3248 178 53 14 chr4 0 958 -202327389 + L1 LINE L1 2957 3998 -2148 2292 84 7 10 chr4 958 1257 -202327090 + AluSq SINE Alu 1 298 -15 3248 178 53 14 chr4 1257 1343 -202327004 + L1 LINE L1 3998 4079 -2067 299 116 0 0 chr4 1443 1486 -202326861 + AluSc SINE Alu 247 289 -10 459 262 128 0 chr4 1503 1675 -202326672 - MER33 DNA MER1_type -129 195 2 707 206 14 27 chr4 1880 2026 -202326321 - MER61D LTR ERV1 -20 481 338 2071 123 0 0 chr4 2493 2803 -202325544 - AluSc SINE Alu 0 312 3 3644 127 37 0 chr4 3061 3638 -202324709 - MER51C LTR ERV1 0 640 1 2443 66 0 3 chr4 3955 4257 -202324090 - AluSc SINE Alu -8 301 1 265 313 20 30 chr4 6163 6262 -202322085 - MIR3 SINE MIR -28 180 83 552 237 87 27 chr4 6965 7184 -202321163 - L2 LINE L2 -5 3308 3077 235 241 72 0 chr4 8217 8300 -202320047 + L1MC4a LINE L1 5347 5435 -727 195 322 0 0 chr4 8429 8488 -202319859 + L2 LINE L2 2562 2620 -694 186 295 92 46 chr4 8638 8855 -202319492 + L2 LINE L2 2818 3044 -228 316 290 59 32 chr4 8864 9050 -202319297 + L1MC4a LINE L1 5740 5930 -1878 369 0 0 0 chr4 9079 9120 -202319227 + (CA)n Simple_repeat Simple_repeat 2 42 0 22 56 0 0 chr4 9196 9232 -202319115 + AT_rich Low_complexity Low_complexity 1 36 0 239 139 0 23 chr4 9486 9529 -202318818 - L1M4 LINE L1 -5660 882 841 1062 238 155 32 chr4 9829 10472 -202317875 + L1MB8 LINE L1 1386 2384 -4441 1599 198 44 68 chr4 10506 10672 -202317675 + L1MB8 LINE L1 6159 6327 -349 2410 91 3 7 chr4 10672 10981 -202317366 - AluSp SINE Alu -5 308 1 1599 198 44 68 chr4 10981 11268 -202317079 + L1MB8 LINE L1 6327 6601 -75 3534 125 0 4 chr4 11438 11950 -202316397 + MER9 LTR ERVK 1 510 -1 287 308 56 0 chr4 13402 13509 -202314838 + MIR SINE MIR 31 143 -119 353 252 220 13 chr4 13605 13918 -202314429 + L2 LINE L2 2871 3248 -65 224 147 26 58 chr4 13945 14138 -202314209 + (CAGAGA)n Simple_repeat Simple_repeat 1 186 0 228 179 13 51 chr4 14050 14128 -202314219 + (CAGAA)n Simple_repeat Simple_repeat 5 79 0 667 230 0 14 chr4 14754 14893 -202313454 + AluJo SINE Alu 2 138 -174 1303 148 0 48 chr4 16343 16572 -202311775 - AluJo SINE Alu -13 299 82 555 282 12 0 chr4 17403 17573 -202310774 + L1MB2 LINE L1 16 187 -6355 539 110 37 0 chr4 17709 17791 -202310556 - AluSc SINE Alu -224 85 1 2187 106 3 6 chr4 17847 18158 -202310189 + AluY SINE Alu 2 311 0 508 255 98 76 chr4 18163 19056 -202309291 + L1MB2 LINE L1 2416 3331 -3313 1408 99 0 35 chr4 19063 19264 -202309083 + AluYa5 SINE Alu 103 296 -15 442 293 68 8 chr4 19300 19566 -202308781 + L1MA8 LINE L1 4527 4808 -1338 750 287 126 2 chr4 19600 20014 -202308333 + L1MB2 LINE L1 5675 6139 -32 1786 185 65 120 chr4 20144 21270 -202307077 + L1MA8 LINE L1 4884 5937 -354 226 284 0 25 chr4 21273 21354 -202306993 + L1MB2 LINE L1 5544 5622 -1022 2391 80 0 3 chr4 21461 21763 -202306584 + AluY SINE Alu 1 301 -10 360 0 0 0 chr4 21763 21803 -202306544 + (TA)n Simple_repeat Simple_repeat 2 41 0 404 246 103 17 chr4 21803 21978 -202306369 + L1MB2 LINE L1 6147 6336 -345 3870 98 72 3 chr4 21981 22552 -202305795 + LTR66 LTR ERVL 1 610 0 13495 98 7 1 chr4 22552 24338 -202304009 + HERVL66 LTR ERVL 1 1797 -2532 313 71 54 71 chr4 24318 24374 -202303973 + HERVL66 LTR ERVL 2654 2708 -1621 * 5097 74 5 12 chr4 24365 25503 -202302844 + HERVL66 LTR ERVL 3064 4329 0 4018 83 88 4 chr4 25503 26059 -202302288 + LTR66 LTR ERVL 1 603 -7 2135 96 4 7 chr4 26104 26376 -202301971 + AluSc SINE Alu 13 283 -26 490 309 75 10 chr4 26400 26695 -202301652 + L1MB2 LINE L1 6352 6665 -4 1013 86 0 0 chr4 26946 27074 -202301273 + AluSg/x SINE Alu 170 297 -15 1857 168 28 39 chr4 27074 27262 -202301085 - MSTA LTR MaLR -66 362 178 2354 83 0 32 chr4 27262 27574 -202300773 + AluY SINE Alu 1 302 -9 1857 168 28 39 chr4 27574 27749 -202300598 - MSTA LTR MaLR -250 178 3 808 270 41 4 chr4 27750 28020 -202300327 + L1MB1 LINE L1 5712 5991 -177 269 287 40 30 chr4 28018 28119 -202300228 + L1 LINE L1 125 226 -5729 * 881 293 115 45 chr4 28123 28741 -202299606 + L1 LINE L1 189 849 -5106 1177 231 49 81 chr4 28767 29030 -202299317 + L1 LINE L1 3963 4233 -1801 658 227 0 0 chr4 29030 29158 -202299189 - FLAM_C SINE Alu -4 129 2 1177 231 49 81 chr4 29158 29486 -202298861 + L1 LINE L1 4233 4535 -1499 1223 124 43 0 chr4 29607 29792 -202298555 + AluY SINE Alu 119 311 0 740 211 45 0 chr4 29796 29952 -202298395 - LTR56 LTR ERV1 -282 163 1 7520 39 5 1 chr4 30071 31181 -202297166 + L1PA5 LINE L1 5035 6147 -7 1264 239 48 5 chr4 31557 32081 -202296266 - MER67C LTR ERV1 -4 706 101 420 121 0 0 chr4 32085 32143 -202296204 + AluSx SINE Alu 4 61 -251 4677 25 9 5 chr4 32143 32699 -202295648 + LTR6B LTR ERV1 1 558 0 1676 97 13 4 chr4 32703 32941 -202295406 + AluSx SINE Alu 62 301 -11 237 81 27 0 chr4 32942 32979 -202295368 - MER67C LTR ERV1 -604 106 69 314 279 90 34 chr4 33738 34082 -202294265 - MER21B LTR ERV1 -75 856 416 966 221 100 7 chr4 35197 35477 -202292870 - MER33 DNA MER1_type -14 310 5 662 228 13 27 chr4 35680 35829 -202292518 - MER61D LTR ERV1 -17 484 338 3523 120 55 5 chr4 36539 37112 -202291235 - MER51C LTR ERV1 0 640 1 1278 291 77 7 chr4 37301 37741 -202290606 - MLT1H LTR MaLR -72 477 7 430 240 23 76 chr4 38416 38587 -202289760 + MER5B DNA MER1_type 1 162 -16 373 98 0 33 chr4 39000 39061 -202289286 - Alu SINE Alu -7 294 236 299 226 0 47 chr4 39146 39252 -202289095 - L1ME3A LINE L1 -2 6168 6068 2412 86 0 3 chr4 39479 39783 -202288564 - AluY SINE Alu -8 303 1 195 218 55 0 chr4 39976 40031 -202288316 - MER5A DNA MER1_type -76 113 56 2265 92 7 13 chr4 41623 41929 -202286418 + AluY SINE Alu 1 304 -7 2432 83 3 0 chr4 41939 42239 -202286108 + AluSp SINE Alu 2 302 -11 1156 248 6 58 chr4 42456 42596 -202285751 + AluJb SINE Alu 2 148 -154 2252 116 0 0 chr4 42596 42888 -202285459 + AluSg SINE Alu 1 292 -18 1156 248 6 58 chr4 42888 43058 -202285289 + AluJb SINE Alu 148 296 -6 394 192 0 19 chr4 43186 43290 -202285057 + GA-rich Low_complexity Low_complexity 2 103 0 2339 176 18 17 chr4 43325 43963 -202284384 + L1P4 LINE L1 5044 5680 -486 * 7838 108 12 2 chr4 43960 45037 -202283310 - THE1B-int LTR MaLR -492 1088 1 2004 123 77 40 chr4 45037 45388 -202282959 - THE1B LTR MaLR 0 364 1 1161 257 75 32 chr4 45686 46323 -202282024 - L2 LINE L2 -36 3277 2624 333 162 0 0 chr4 47322 47390 -202280957 + (TCCA)n Simple_repeat Simple_repeat 3 70 0 2331 107 0 0 chr4 47684 47984 -202280363 - AluSc SINE Alu -9 300 1 265 256 174 25 chr4 48031 48152 -202280195 + MIR3 SINE MIR 7 145 -63 2014 123 41 3 chr4 48406 48698 -202279649 - AluSg SINE Alu -7 303 1 2091 120 6 35 chr4 49061 49378 -202278969 + AluSq SINE Alu 1 308 -5 2423 91 0 3 chr4 49981 50290 -202278057 + AluY SINE Alu 2 309 -2 2512 76 3 0 chr4 50290 50592 -202277755 + AluSp SINE Alu 1 303 -10 434 165 10 39 chr4 51242 51345 -202277002 + SVA Other Other 583 682 -704 2362 106 0 0 chr4 51582 51883 -202276464 + AluSg SINE Alu 1 301 -9 1149 203 44 0 chr4 51915 52210 -202276137 + L1MA7 LINE L1 5981 6288 -3 2112 124 3 7 chr4 52425 52731 -202275616 - AluSx SINE Alu -7 305 1 1394 183 0 0 chr4 53043 53273 -202275074 + AluSx SINE Alu 64 293 -19 314 333 49 25 chr4 53328 53532 -202274815 + L1M4 LINE L1 4744 4952 -1194 1688 271 90 33 chr4 53548 53771 -202274576 + L1M4 LINE L1 3435 3644 -2502 1894 130 45 3 chr4 53771 54063 -202274284 + AluY SINE Alu 1 304 -7 1688 271 90 33 chr4 54063 54412 -202273935 + L1M4 LINE L1 3644 3971 -2175 2439 88 0 0 chr4 54412 54717 -202273630 + AluY SINE Alu 1 305 -6 1688 271 90 33 chr4 54717 55265 -202273082 + L1M4 LINE L1 3971 4642 -1504 2362 79 9 25 chr4 55265 55582 -202272765 - AluSp SINE Alu -1 312 1 1688 271 90 33 chr4 55582 55742 -202272605 + L1M4 LINE L1 4642 4791 -1355 6495 248 27 17 chr4 55751 57981 -202270366 + L1PA12 LINE L1 178 3221 -4363 2549 151 37 31 chr4 57981 58470 -202269877 + LTR22B LTR ERVK 1 492 0 6495 248 27 17 chr4 58470 58506 -202269841 + L1PA12 LINE L1 3221 3255 -4329 2160 106 3 3 chr4 58517 58800 -202269547 + AluSq SINE Alu 1 283 -30 456 67 0 0 chr4 58802 58862 -202269485 + (CATA)n Simple_repeat Simple_repeat 2 61 0 7400 85 17 19 chr4 58865 59874 -202268473 - LTR13 LTR ERVK 0 1007 1 1127 306 62 35 chr4 59887 60245 -202268102 - L1M4 LINE L1 -1744 4402 4055 2507 82 0 0 chr4 60245 60548 -202267799 - AluSg SINE Alu -7 303 1 1127 306 62 35 chr4 60548 60815 -202267532 - L1M4 LINE L1 -2091 4055 3796 2349 94 3 3 chr4 60815 61114 -202267233 - AluSc SINE Alu -10 299 1 1127 306 62 35 chr4 61114 61364 -202266983 - L1M4 LINE L1 -2350 3796 3503 302 309 133 21 chr4 61437 61625 -202266722 - L1M4 LINE L1 -1194 4952 4744 2269 111 0 0 chr4 61663 61960 -202266387 - AluSq SINE Alu -12 301 5 1326 192 0 0 chr4 61969 62209 -202266138 - AluJo SINE Alu -12 300 61 21 36 0 0 chr4 62267 62295 -202266052 + AT_rich Low_complexity Low_complexity 1 28 0 1981 100 8 0 chr4 62295 62554 -202265793 + AluSq SINE Alu 1 261 -52 23 68 0 0 chr4 62782 62826 -202265521 + AT_rich Low_complexity Low_complexity 1 44 0 22 56 0 0 chr4 62985 63021 -202265326 + AT_rich Low_complexity Low_complexity 1 36 0 2044 139 0 0 chr4 63021 63326 -202265021 + AluSx SINE Alu 1 305 0 278 254 164 25 chr4 63743 63865 -202264482 - MIR3 SINE MIR -63 145 7 237 221 0 0 chr4 64293 64361 -202263986 + (TGGA)n Simple_repeat Simple_repeat 3 70 0 532 240 190 14 chr4 65258 65479 -202262868 - MIR SINE MIR -1 261 2 335 231 0 23 chr4 66692 66822 -202261525 + (TG)n Simple_repeat Simple_repeat 2 128 0 277 281 76 67 chr4 67810 68152 -202260195 + MER21A LTR ERV1 512 856 -75 1715 250 149 5 chr4 68824 69440 -202258907 + MER67C LTR ERV1 1 705 -5 2339 144 64 9 chr4 69901 70323 -202258024 + LTR56 LTR ERV1 1 445 0 2316 71 27 7 chr4 70350 70644 -202257703 - AluSg SINE Alu -10 300 1 187 324 14 14 chr4 71774 71845 -202256502 + MER5A DNA MER1_type 31 101 -88 2593 65 0 0 chr4 72726 73034 -202255313 + AluY SINE Alu 1 308 -3 23 0 0 0 chr4 73591 73614 -202254733 + AT_rich Low_complexity Low_complexity 1 23 0 2481 82 0 0 chr4 73796 74102 -202254245 + AluSc SINE Alu 1 306 -3 1218 82 54 22 chr4 74685 74785 -202253562 + MER30B DNA MER1_type 1 111 -79 1910 101 4 0 chr4 74785 75033 -202253314 + AluSp SINE Alu 57 305 -8 1218 82 54 22 chr4 75033 75116 -202253231 + MER30B DNA MER1_type 111 190 0 494 188 99 35 chr4 75374 75577 -202252770 - MER6 DNA MER2_type -1 864 -65 2066 176 86 117 chr4 75608 76121 -202252226 - L1MA9 LINE L1 -26 6286 5758 242 133 0 0 chr4 76121 76166 -202252181 - LTR66 LTR ERVL -172 438 394 2066 176 86 117 chr4 76166 76314 -202252033 - L1MA9 LINE L1 -554 5758 5607 2275 115 3 0 chr4 76314 76619 -202251728 - AluSp SINE Alu -7 306 1 2475 70 0 0 chr4 76622 76921 -202251426 - AluY SINE Alu -12 299 1 2066 176 86 117 chr4 76921 77004 -202251343 - L1MA9 LINE L1 -707 5605 5518 850 209 37 81 chr4 77007 77134 -202251213 - L1MA9 LINE L1 -780 5366 5235 2080 117 21 0 chr4 77134 77424 -202250923 - AluY SINE Alu -15 296 1 850 209 37 81 chr4 77424 77678 -202250669 - L1MA9 LINE L1 -911 5235 5002 2138 105 0 51 chr4 77712 78025 -202250322 + AluSx SINE Alu 2 298 -14 1179 227 51 78 chr4 78027 78432 -202249915 - L1MA9 LINE L1 -1422 4724 4338 658 227 0 0 chr4 78432 78560 -202249787 + FLAM_C SINE Alu 2 129 -4 1179 227 51 78 chr4 78560 78744 -202249603 - L1MA9 LINE L1 -1808 4338 4151 732 266 24 34 chr4 78844 79051 -202249296 - L1M4b LINE L1 -6638 221 17 258 310 54 29 chr4 79579 79818 -202248529 + L1M4 LINE L1 4741 4985 -1161 587 280 54 16 chr4 79865 80227 -202248120 - L1MC5 LINE L1 -48 7913 7494 464 286 7 0 chr4 80262 80402 -202247945 - L1MC5 LINE L1 -1171 6790 6650 280 250 0 50 chr4 80955 81055 -202247292 + L1ME3A LINE L1 6068 6162 -8 1566 111 0 0 chr4 81111 81318 -202247029 - AluSc SINE Alu -15 294 88 8786 63 2 3 chr4 81318 82390 -202245957 + MER11C LTR ERVK 1 1071 0 435 127 0 0 chr4 82404 82467 -202245880 - AluS SINE Alu -247 64 2 336 227 40 0 chr4 82925 83000 -202245347 - MER5B DNA MER1_type -16 162 85 2267 78 0 4 chr4 83001 83282 -202245065 + AluSc SINE Alu 13 292 -17 509 325 68 24 chr4 83400 83652 -202244695 + L1M3a LINE L1 192 454 -5501 424 320 37 0 chr4 83654 83859 -202244488 + L1M3a LINE L1 550 736 -5219 * 1779 276 42 47 chr4 83837 84558 -202243789 + L1M3a LINE L1 344 944 -5011 2167 116 3 0 chr4 84558 84852 -202243495 + AluSx SINE Alu 1 295 -17 1779 276 42 47 chr4 84852 84880 -202243467 + L1M3a LINE L1 944 971 -4984 * 25330 88 8 10 chr4 84873 85541 -202242806 + L1PA7 LINE L1 1712 2380 -3774 2374 78 0 7 chr4 85541 85834 -202242513 + AluY SINE Alu 1 291 -20 25330 88 8 10 chr4 85834 87584 -202240763 + L1PA7 LINE L1 2380 4133 -2021 2347 105 0 0 chr4 87584 87879 -202240468 + AluSx SINE Alu 1 295 -17 25330 88 8 10 chr4 87879 89913 -202238434 + L1PA7 LINE L1 4133 6154 0 568 229 93 19 chr4 89918 90182 -202238165 + L1M3a LINE L1 945 1238 -4727 2247 106 7 0 chr4 90182 90483 -202237864 + AluSx SINE Alu 1 303 -9 568 229 93 19 chr4 90483 90542 -202237805 + L1M3a LINE L1 1238 1291 -4674 421 178 14 0 chr4 90660 90733 -202237614 + AluJo SINE Alu 61 134 -168 2156 104 7 20 chr4 90791 91090 -202237257 + AluY SINE Alu 1 295 -16 1453 224 0 14 chr4 91094 91388 -202236959 + AluJb SINE Alu 1 290 -22 1574 77 39 0 chr4 91490 91697 -202236650 + AluY SINE Alu 97 311 0 333 210 50 0 chr4 91698 91798 -202236549 + Charlie5 DNA MER1_type 2467 2571 -41 1163 117 0 0 chr4 92007 92170 -202236177 + AluSg/x SINE Alu 137 299 -13 1966 118 30 0 chr4 92345 92636 -202235711 + AluSg SINE Alu 1 299 0 1385 86 34 75 chr4 92936 93072 -202235275 - MER4-int LTR ERV1 -2506 4092 3971 2406 78 0 28 chr4 93072 93392 -202234955 + AluY SINE Alu 1 311 0 1385 86 34 75 chr4 93392 93522 -202234825 - MER4-int LTR ERV1 -2627 3971 3837 6234 99 149 148 chr4 93577 94596 -202233751 - MER4-int LTR ERV1 -3065 3533 2517 2001 154 0 20 chr4 94596 94901 -202233446 + AluSx SINE Alu 1 299 -13 6234 99 149 148 chr4 94901 95381 -202232966 - MER4-int LTR ERV1 -4081 2517 2039 574 67 0 0 chr4 95381 95456 -202232891 - Alu SINE Alu -12 297 223 2372 73 0 17 chr4 95383 95685 -202232662 - AluY SINE Alu -14 297 1 6234 99 149 148 chr4 95685 96093 -202232254 - MER4-int LTR ERV1 -4788 1810 1404 2343 62 31 0 chr4 96093 96381 -202231966 - AluY SINE Alu -14 297 1 6234 99 149 148 chr4 96381 96659 -202231688 - MER4-int LTR ERV1 -5194 1404 532 2214 100 0 10 chr4 96802 97101 -202231246 - AluSc SINE Alu -13 296 1 647 103 31 0 chr4 97102 97199 -202231148 - MER4-int LTR ERV1 -5506 1092 993 232 178 0 44 chr4 97219 97264 -202231083 - LTR49 LTR ERV1 -282 313 271 260 95 0 0 chr4 97297 97339 -202231008 - MER4-int LTR ERV1 -5872 726 685 407 137 14 27 chr4 97367 97440 -202230907 - MER4-int LTR ERV1 -5788 810 739 287 136 27 55 chr4 97784 97894 -202230453 - MER4-int LTR ERV1 -5925 673 567 2000 118 20 3 chr4 98182 98479 -202229868 + AluSg SINE Alu 3 304 -6 216 0 0 0 chr4 98798 98822 -202229525 + (A)n Simple_repeat Simple_repeat 1 24 0 183 211 58 19 chr4 99470 99522 -202228825 + L2 LINE L2 3175 3228 -85 635 146 89 8 chr4 100411 100534 -202227813 - LTR23 LTR ERV1 -5 432 300 252 184 0 0 chr4 100534 100583 -202227764 + (TA)n Simple_repeat Simple_repeat 2 50 0 266 281 0 0 chr4 100584 100673 -202227674 - L1MC4 LINE L1 -1339 6703 6615 195 184 0 0 chr4 100684 100722 -202227625 + (TA)n Simple_repeat Simple_repeat 1 38 0 26 0 0 0 chr4 100917 100943 -202227404 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr4 100995 101018 -202227329 + (T)n Simple_repeat Simple_repeat 1 23 0 2200 110 10 0 chr4 101337 101636 -202226711 - AluSg SINE Alu -6 304 3 221 340 88 25 chr4 102002 102161 -202226186 - MER5B DNA MER1_type -1 177 9 1258 144 16 0 chr4 103839 104026 -202224321 + MER30B DNA MER1_type 1 190 0 281 134 71 189 chr4 104262 104326 -202224021 - MER6 DNA MER2_type -17 848 805 1910 135 7 7 chr4 104326 104614 -202223733 + AluSg SINE Alu 1 288 -22 281 134 71 189 chr4 104614 104676 -202223671 - MER6 DNA MER2_type -60 805 737 1795 172 43 91 chr4 104772 105301 -202223046 - L1MA9 LINE L1 -26 6286 5783 317 241 0 23 chr4 105290 105377 -202222970 - L1MC4 LINE L1 -1344 6698 6614 * 23 0 0 0 chr4 106086 106109 -202222238 + AT_rich Low_complexity Low_complexity 1 23 0 2463 82 0 0 chr4 106291 106597 -202221750 + AluSc SINE Alu 1 306 -3 1295 82 54 22 chr4 107180 107280 -202221067 + MER30B DNA MER1_type 1 111 -79 1903 101 4 0 chr4 107280 107528 -202220819 + AluSp SINE Alu 57 305 -8 1295 82 54 22 chr4 107528 107611 -202220736 + MER30B DNA MER1_type 111 190 0 503 188 99 35 chr4 107870 108073 -202220274 - MER6 DNA MER2_type -1 864 -65 2102 173 78 111 chr4 108104 108617 -202219730 - L1MA9 LINE L1 -26 6286 5755 249 133 0 0 chr4 108617 108662 -202219685 - LTR66 LTR ERVL -172 438 394 2102 173 78 111 chr4 108662 108808 -202219539 - L1MA9 LINE L1 -557 5755 5606 2259 115 3 0 chr4 108809 109114 -202219233 - AluSp SINE Alu -7 306 1 2333 76 0 10 chr4 109117 109419 -202218928 - AluY SINE Alu -12 299 1 247 239 56 80 chr4 109436 109649 -202218698 + L1M1 LINE L1 3343 3550 -4015 973 107 0 0 chr4 109674 109805 -202218542 - AluSg/x SINE Alu -4 308 178 943 195 6 6 chr4 110377 110551 -202217796 - MSTA LTR MaLR -254 174 1 449 211 48 160 chr4 110552 110622 -202217725 + L1MB2 LINE L1 5714 5790 -381 2373 69 16 13 chr4 110622 110927 -202217420 + AluY SINE Alu 1 306 -5 449 211 48 160 chr4 110927 111169 -202217178 + L1MB2 LINE L1 5790 5991 -180 * 934 294 64 82 chr4 111167 111540 -202216807 + L1MA9 LINE L1 125 479 -5476 2106 96 3 45 chr4 111540 111684 -202216663 + AluSg SINE Alu 1 149 -161 2217 74 42 0 chr4 111684 111967 -202216380 + AluY SINE Alu 2 296 -15 2106 96 3 45 chr4 111967 112135 -202216212 + AluSg SINE Alu 149 300 -10 934 294 64 82 chr4 112135 112500 -202215847 + L1MA9 LINE L1 479 849 -5106 2908 216 67 89 chr4 112529 112787 -202215560 + L1MA9 LINE L1 3954 4216 -1818 675 241 0 0 chr4 112787 112920 -202215427 - FLAM_C SINE Alu 0 133 1 2908 216 67 89 chr4 112920 113578 -202214769 + L1MA9 LINE L1 4216 4887 -1147 2300 73 7 3 chr4 113578 113866 -202214481 - AluY SINE Alu -21 290 2 2908 216 67 89 chr4 113866 114152 -202214195 + L1MA9 LINE L1 4887 5178 -856 1714 140 4 4 chr4 114152 114426 -202213921 + AluSp SINE Alu 36 309 0 1792 127 80 4 chr4 114426 114702 -202213645 + AluSc SINE Alu 1 297 -12 2908 216 67 89 chr4 114702 114827 -202213520 + L1MA9 LINE L1 5176 5255 -779 2292 164 104 101 chr4 114836 115588 -202212759 + L1MA9 LINE L1 5417 6170 -30 323 237 131 81 chr4 115624 115743 -202212604 + MER6B DNA MER2_type 2 136 -729 2128 109 13 3 chr4 115743 116045 -202212302 - AluSq SINE Alu -8 305 1 323 237 131 81 chr4 116045 116123 -202212224 + MER6B DNA MER2_type 136 209 -1 211 333 200 22 chr4 116846 116981 -202211366 - MER5A DNA MER1_type 0 189 31 249 288 40 56 chr4 117174 117299 -202211048 + MER93b LTR ERV1 215 337 -36 2207 110 0 3 chr4 118280 118588 -202209759 + AluSg SINE Alu 1 307 -3 2282 76 3 0 chr4 118592 118883 -202209464 + AluY SINE Alu 1 292 -19 660 313 56 47 chr4 120341 120785 -202207562 + LTR60-int LTR ERV1 6444 6891 -314 2036 78 82 3 chr4 120940 121222 -202207125 - AluY SINE Alu -6 305 2 1244 223 36 22 chr4 121321 121775 -202206572 + LTR60 LTR ERV1 1 545 -41 342 245 103 73 chr4 121637 121870 -202206477 + TAR1 Satellite telomeric 25 264 -1847 * 947 232 41 50 chr4 121923 122074 -202206273 - L1MB2 LINE L1 -170 6001 5850 414 234 15 102 chr4 122074 122211 -202206136 - FLAM_C SINE Alu -8 125 1 947 232 41 50 chr4 122211 122400 -202205947 - L1MB2 LINE L1 -321 5850 5664 230 291 9 45 chr4 122421 122456 -202205891 - L1MB2 LINE L1 -1159 4987 4952 2301 78 17 10 chr4 122456 122752 -202205595 - AluSx SINE Alu -14 298 1 230 291 9 45 chr4 122752 122826 -202205521 - L1MB2 LINE L1 -1194 4952 4882 2956 246 43 22 chr4 124082 124621 -202203726 - L1MB2 LINE L1 -2 6169 5602 1630 204 3 0 chr4 124621 124905 -202203442 - AluJb SINE Alu -25 287 3 2956 246 43 22 chr4 124905 125238 -202203109 - L1MB2 LINE L1 -569 5602 5278 570 125 42 0 chr4 125246 125342 -202203005 - AluSg/x SINE Alu 0 310 211 2107 125 0 3 chr4 125854 126150 -202202197 - AluSp SINE Alu -18 295 1 2253 107 0 0 chr4 126180 126480 -202201867 - AluSg SINE Alu -10 300 1 227 258 269 0 chr4 126551 126644 -202201703 + MER5A DNA MER1_type 56 173 -16 335 213 13 0 chr4 127080 127155 -202201192 + L1MA6 LINE L1 5866 5941 -359 231 361 0 0 chr4 127153 127261 -202201086 + L1MB2 LINE L1 5045 5152 -994 * 2117 80 20 40 chr4 127305 127604 -202200743 + AluY SINE Alu 4 296 -15 1079 295 74 15 chr4 127604 128079 -202200268 + L1MB2 LINE L1 5665 6167 -4 26 0 0 0 chr4 128323 128349 -202199998 + AT_rich Low_complexity Low_complexity 1 26 0 2141 107 6 22 chr4 128442 128759 -202199588 + AluSp SINE Alu 1 312 -1 269 174 22 0 chr4 129111 129157 -202199190 + L1M4c LINE L1 1 47 -5908 460 189 32 0 chr4 129189 129284 -202199063 - L1PBa LINE L1 -6463 400 303 24 32 0 0 chr4 131648 131679 -202196668 + AT_rich Low_complexity Low_complexity 1 31 0 2194 113 3 0 chr4 132223 132515 -202195832 + AluSq SINE Alu 1 293 -20 742 327 86 22 chr4 132518 132879 -202195468 + L1M4c LINE L1 71 454 -5501 2199 283 73 38 chr4 132891 134798 -202193549 + L1M4c LINE L1 344 1794 -4241 2204 99 7 0 chr4 134806 135099 -202193248 + AluY SINE Alu 1 295 -16 431 173 0 62 chr4 135171 135252 -202193095 + AluJo SINE Alu 61 136 -176 1710 186 0 14 chr4 135289 135574 -202192773 + AluJb SINE Alu 1 281 -31 1997 242 107 39 chr4 135616 135830 -202192517 + L1M4c LINE L1 1774 1972 -4062 2187 118 7 0 chr4 135830 136134 -202192213 + AluY SINE Alu 1 306 -5 1997 242 107 39 chr4 136134 136207 -202192140 + L1M4c LINE L1 1972 2039 -3995 1194 308 58 8 chr4 136207 136584 -202191763 + MSTD LTR MaLR 1 396 0 1997 242 107 39 chr4 136584 137508 -202190839 + L1M4c LINE L1 2039 3071 -2963 307 273 7 93 chr4 137510 137555 -202190792 - MER67C LTR ERV1 -573 137 90 2186 98 3 14 chr4 137555 137852 -202190495 + AluSg SINE Alu 1 294 -16 307 273 7 93 chr4 137852 137956 -202190391 - MER67C LTR ERV1 -620 90 1 264 122 0 0 chr4 138431 138472 -202189875 + (A)n Simple_repeat Simple_repeat 1 41 0 1485 203 0 23 chr4 138533 138834 -202189513 - AluJb SINE Alu -18 294 1 2131 51 83 11 chr4 138839 139115 -202189232 - AluY SINE Alu -15 296 1 881 283 79 6 chr4 139161 139479 -202188868 - MER21B LTR ERV1 -107 756 416 1320 223 156 31 chr4 139531 140043 -202188304 + MER92B LTR ERV1 59 634 -2 312 48 0 0 chr4 141215 141257 -202187090 + (TG)n Simple_repeat Simple_repeat 1 42 0 5159 187 51 13 chr4 141775 143478 -202184869 + L1MA3 LINE L1 4085 5722 -583 2211 54 91 0 chr4 143478 143754 -202184593 - AluY SINE Alu -10 301 1 5159 187 51 13 chr4 143754 144130 -202184217 + L1MA3 LINE L1 5722 6256 -49 2115 84 42 7 chr4 144130 144417 -202183930 + AluY SINE Alu 1 297 -14 5159 187 51 13 chr4 144417 144469 -202183878 + L1MA3 LINE L1 6256 6305 0 373 288 49 10 chr4 144895 145100 -202183247 + L1MB2 LINE L1 4639 4851 -1295 1086 257 39 12 chr4 145102 145437 -202182910 + L1MB2 LINE L1 5675 6018 -153 965 59 8 0 chr4 145485 145603 -202182744 - AluY SINE Alu -43 268 150 695 137 8 8 chr4 145613 145744 -202182603 - L1PA13 LINE L1 -4 6159 6029 1116 281 37 50 chr4 145856 145960 -202182387 + L1 LINE L1 4519 4623 -1523 2130 110 7 3 chr4 145960 146250 -202182097 - AluSg SINE Alu -17 293 3 1116 281 37 50 chr4 146250 146719 -202181628 + L1 LINE L1 4623 5084 -1062 1093 109 14 0 chr4 146719 146866 -202181481 - AluSg/x SINE Alu -16 296 148 1917 89 19 19 chr4 146867 147124 -202181223 - AluY SINE Alu -54 257 1 758 314 26 74 chr4 147194 147656 -202180691 + L1M3a LINE L1 118 557 -5398 1196 192 179 26 chr4 147861 148251 -202180096 + LTR7 LTR ERV1 1 450 0 2029 194 49 25 chr4 148251 148699 -202179648 + HERVH LTR ERV1 1 459 -7254 11594 150 9 41 chr4 148757 149580 -202178767 + HERVH LTR ERV1 800 1648 -6065 2985 13 0 0 chr4 149580 149898 -202178449 - AluYb8 SINE Alu 0 318 1 11594 150 9 41 chr4 149898 150885 -202177462 + HERVH LTR ERV1 1648 2534 -5179 2459 76 0 0 chr4 150885 151176 -202177171 + AluY SINE Alu 1 291 -20 11594 150 9 41 chr4 151176 151464 -202176883 + HERVH LTR ERV1 2534 2830 -4883 4130 135 2 5 chr4 151464 152103 -202176244 + HERVH LTR ERV1 3357 3993 -3720 2998 149 15 20 chr4 152086 152637 -202175710 + HERVH LTR ERV1 3993 5286 -1805 * 4460 125 40 38 chr4 152635 153586 -202174761 + pTR5 LTR ERV1 741 2025 -413 375 235 10 0 chr4 153586 153684 -202174663 + LTR30 LTR ERV1 544 642 -80 1546 90 5 9 chr4 153687 153910 -202174437 + pTR5 LTR ERV1 172 393 -2045 * 20375 150 5 3 chr4 153909 157160 -202171187 + HERVH LTR ERV1 4458 7713 0 1207 193 185 28 chr4 157160 157549 -202170798 + LTR7 LTR ERV1 1 450 0 3166 232 59 46 chr4 157677 157910 -202170437 + L1MA10 LINE L1 4112 4340 -1828 633 248 0 0 chr4 157910 158043 -202170304 - FLAM_C SINE Alu 0 133 1 3166 232 59 46 chr4 158043 159047 -202169300 + L1MA10 LINE L1 4340 5366 -802 1923 179 137 103 chr4 159060 159464 -202168883 + L1MA10 LINE L1 5529 5918 -416 821 126 0 22 chr4 159464 159599 -202168748 - FLAM_C SINE Alu 0 133 2 1923 179 137 103 chr4 159599 159788 -202168559 + L1MA10 LINE L1 5918 6099 -235 2335 101 0 0 chr4 159788 160086 -202168261 - AluSg SINE Alu -12 298 1 1923 179 137 103 chr4 160086 160241 -202168106 + L1MA10 LINE L1 6099 6304 -30 359 243 52 62 chr4 160272 160376 -202167971 + MER6B DNA MER2_type 1 104 -761 9620 23 2 245 chr4 160376 162191 -202166156 - SVA Other Other -1 1385 13 359 243 52 62 chr4 162191 162215 -202166132 + MER6B DNA MER2_type 104 127 -738 1693 102 0 5 chr4 162215 162431 -202165916 - AluSg SINE Alu -95 215 1 359 243 52 62 chr4 162431 162511 -202165836 + MER6B DNA MER2_type 127 208 -2 1202 144 5 0 chr4 162723 162911 -202165436 - MER30B DNA MER1_type -1 189 1 3685 126 14 14 chr4 163813 164384 -202163963 - LTR10C LTR ERV1 -20 571 1 3579 58 74 0 chr4 166879 167326 -202161021 - LTR2B LTR ERV1 0 490 11 2317 123 60 13 chr4 167434 167865 -202160482 - LTR56 LTR ERV1 -5 433 9 2124 106 0 26 chr4 168186 168489 -202159858 - AluY SINE Alu -16 295 1 1392 229 50 48 chr4 168644 169291 -202159056 - MER67C LTR ERV1 -5 705 1 307 290 99 34 chr4 170057 170319 -202158028 - MER21B LTR ERV1 -169 694 416 390 266 8 16 chr4 170351 170475 -202157872 + MER93a LTR ERV1 244 366 -36 23 0 0 0 chr4 171317 171340 -202157007 + AT_rich Low_complexity Low_complexity 1 23 0 860 247 62 43 chr4 171413 171531 -202156816 - MER33 DNA MER1_type -2275 310 196 1966 132 16 3 chr4 171531 171834 -202156513 + AluSc SINE Alu 1 307 -2 860 247 62 43 chr4 171834 172019 -202156328 - MER33 DNA MER1_type -2389 196 1 728 205 49 33 chr4 172222 172427 -202155920 - MER61D LTR ERV1 -18 732 338 3524 131 38 2 chr4 173086 173661 -202154686 - MER51C LTR ERV1 0 640 3 1053 289 131 7 chr4 173845 174264 -202154083 - MLT1H LTR MaLR -72 477 7 2475 63 7 3 chr4 174914 175213 -202153134 + AluY SINE Alu 1 300 -11 576 262 39 78 chr4 175236 175455 -202152892 - MER52-int LTR ERV1 -1818 5273 5047 1321 384 7 16 chr4 175455 175762 -202152585 + AluSx SINE Alu 5 308 -4 576 262 39 78 chr4 175762 175869 -202152478 - MER52-int LTR ERV1 -2044 5047 3967 280 250 91 0 chr4 176402 176490 -202151857 + MIR SINE MIR 92 187 -75 2151 110 7 27 chr4 176490 176790 -202151557 - AluSq SINE Alu -19 294 1 1010 208 76 25 chr4 176924 177373 -202150974 + L1MA8 LINE L1 5748 6287 -4 2164 120 3 0 chr4 177489 177790 -202150557 + AluSg SINE Alu 1 302 -8 2358 111 0 0 chr4 178020 178327 -202150020 + AluSg SINE Alu 1 307 -3 791 204 101 86 chr4 178893 179058 -202149289 - MER92B LTR ERV1 0 636 475 2181 90 3 7 chr4 179058 179347 -202149000 + AluSc SINE Alu 1 288 -21 791 204 101 86 chr4 179347 179519 -202148828 - MER92B LTR ERV1 -161 475 294 300 274 32 21 chr4 179553 179648 -202148699 - MER92B LTR ERV1 -508 128 33 917 251 118 30 chr4 179662 180025 -202148322 + MER21B LTR ERV1 400 794 -69 1684 185 0 7 chr4 180044 180341 -202148006 + AluJb SINE Alu 1 295 -17 1843 145 7 14 chr4 180402 180718 -202147629 - AluSx SINE Alu 0 314 1 442 231 30 8 chr4 181354 181488 -202146859 + MER67C LTR ERV1 1 137 -573 1019 262 80 34 chr4 181491 182123 -202146224 - L1 LINE L1 -2963 3071 2469 2023 119 6 50 chr4 182123 182463 -202145884 - AluSx SINE Alu 0 312 1 1019 262 80 34 chr4 182463 182657 -202145690 - L1 LINE L1 -3565 2469 2285 858 277 64 56 chr4 182657 182908 -202145439 - MSTD LTR MaLR 0 396 148 2129 111 7 3 chr4 182908 183206 -202145141 + AluSg SINE Alu 1 299 -11 858 277 64 56 chr4 183206 183271 -202145076 - MSTD LTR MaLR -248 148 85 1750 117 47 33 chr4 183271 183570 -202144777 - AluSc SINE Alu -6 303 1 858 277 64 56 chr4 183570 183645 -202144702 - MSTD LTR MaLR -311 85 1 1019 262 80 34 chr4 183645 183916 -202144431 - L1 LINE L1 -3749 2285 1787 1401 216 20 24 chr4 183919 184211 -202144136 - AluJb SINE Alu -21 291 1 691 130 0 0 chr4 184297 184397 -202143950 + AluSg/x SINE Alu 202 301 -9 2336 283 73 50 chr4 184397 184654 -202143693 - L1 LINE L1 -4519 1446 1196 2010 103 16 53 chr4 184654 184975 -202143372 - AluSc SINE Alu 0 309 1 2336 283 73 50 chr4 184975 185137 -202143210 - L1 LINE L1 -4769 1196 1039 2264 118 7 0 chr4 185137 185442 -202142905 - AluSq SINE Alu -6 307 1 2336 283 73 50 chr4 185442 185521 -202142826 - L1 LINE L1 -4926 1039 963 2161 117 7 7 chr4 185521 185828 -202142519 - AluSc SINE Alu 0 309 3 2336 283 73 50 chr4 185828 186600 -202141747 - L1 LINE L1 -5002 963 344 333 314 29 0 chr4 186680 186782 -202141565 - L1M3a LINE L1 -5211 744 640 903 328 88 24 chr4 186790 187208 -202141139 - L1M3a LINE L1 -5501 454 10 22 0 0 0 chr4 187757 187779 -202140568 + AT_rich Low_complexity Low_complexity 1 22 0 669 256 146 6 chr4 188026 188347 -202140000 - L1MB3 LINE L1 -4 6179 5814 * 15733 55 6 8 chr4 188343 190432 -202137915 - L1PA5 LINE L1 -1 6153 4072 2130 102 0 7 chr4 190432 190727 -202137620 + AluY SINE Alu 3 295 -16 15733 55 6 8 chr4 190727 191556 -202136791 - L1PA5 LINE L1 -2082 4072 3243 4481 180 36 2 chr4 191564 192424 -202135923 - L1P LINE L1 -5247 899 11 2849 224 47 18 chr4 192430 193261 -202135086 - L1MB3 LINE L1 -810 5336 4476 1985 146 17 0 chr4 193261 193556 -202134791 - AluSg SINE Alu -9 301 2 2849 224 47 18 chr4 193556 193625 -202134722 - L1MB3 LINE L1 -1670 4476 4410 1801 158 27 10 chr4 193626 193923 -202134424 - AluSx SINE Alu -10 302 1 622 247 16 21 chr4 193931 194117 -202134230 + L1 LINE L1 3907 4091 -2055 21 0 0 0 chr4 194117 194138 -202134209 + AT_rich Low_complexity Low_complexity 1 21 0 2094 109 39 0 chr4 194475 194759 -202133588 - AluSg SINE Alu -15 295 1 478 118 0 13 chr4 194796 194872 -202133475 - L1PA7 LINE L1 -7 6147 6073 496 303 37 72 chr4 194878 195200 -202133147 - L1MB2 LINE L1 -53 6354 6051 2024 135 0 17 chr4 195200 195497 -202132850 - AluSx SINE Alu -20 292 1 496 303 37 72 chr4 195497 195633 -202132714 - L1MB2 LINE L1 -356 6051 5912 508 283 72 31 chr4 195637 195927 -202132420 - L1MB2 LINE L1 -1296 5086 4785 423 298 27 30 chr4 195931 196114 -202132233 - L1MB2 LINE L1 -3505 2877 2694 246 32 0 0 chr4 196114 196145 -202132202 + (CA)n Simple_repeat Simple_repeat 2 32 0 423 298 27 30 chr4 196145 196256 -202132091 - L1MB2 LINE L1 -3688 2694 2584 287 256 110 51 chr4 196375 196693 -202131654 - L1MB2 LINE L1 -3890 2494 2196 252 0 0 0 chr4 196693 196721 -202131626 + (TA)n Simple_repeat Simple_repeat 2 29 0 2340 97 0 3 chr4 196721 197020 -202131327 - AluSc SINE Alu -11 298 1 287 256 110 51 chr4 197020 197129 -202131218 - L1MB2 LINE L1 -4187 2197 2041 679 300 64 18 chr4 197218 197690 -202130657 - L1MB2 LINE L1 -4452 1930 1355 2265 94 0 10 chr4 197690 197987 -202130360 - AluY SINE Alu -17 294 1 679 300 64 18 chr4 197987 198030 -202130317 - L1MB2 LINE L1 -5027 1355 1315 43 35 0 0 chr4 198048 198105 -202130242 + AT_rich Low_complexity Low_complexity 1 57 0 2183 107 0 3 chr4 198191 198480 -202129867 - AluSc SINE Alu -16 293 6 2035 109 0 4 chr4 198517 198792 -202129555 - AluY SINE Alu -34 277 4 283 354 20 44 chr4 199238 199535 -202128812 - L1MB2 LINE L1 -5596 707 418 21 0 0 0 chr4 202998 203019 -202125328 + AT_rich Low_complexity Low_complexity 1 21 0 848 149 90 11 chr4 203275 203463 -202124884 - L1MA3 LINE L1 -5 6300 6098 2078 131 3 3 chr4 204839 205144 -202123203 + AluSc SINE Alu 1 305 -4 246 239 0 16 chr4 207162 207292 -202121055 + (CA)n Simple_repeat Simple_repeat 1 127 0 374 304 82 78 chr4 207831 208305 -202120042 - L1M2 LINE L1 -5522 1327 852 544 230 122 48 chr4 208474 208704 -202119643 + MIR SINE MIR 14 260 -2 2040 76 10 7 chr4 209278 209581 -202118766 - LTR6B LTR ERV1 -254 304 1 426 121 0 0 chr4 209581 209639 -202118708 - AluS SINE Alu -248 61 4 1139 239 48 5 chr4 209643 210167 -202118180 + MER67C LTR ERV1 101 706 -4 1486 153 0 14 chr4 210543 210825 -202117522 - L1PA5 LINE L1 -7 6147 5870 1928 109 39 0 chr4 211297 211582 -202116765 + AluY SINE Alu 1 296 -15 845 202 43 11 chr4 211582 211770 -202116577 - MSTA LTR MaLR -66 362 169 2329 75 0 33 chr4 211770 212076 -202116271 + AluY SINE Alu 1 296 -15 1407 143 14 0 chr4 212528 212751 -202115596 - AluSg/x SINE Alu -18 294 69 331 272 33 0 chr4 212867 212959 -202115388 - AluS SINE Alu -208 95 1 2326 231 57 52 chr4 212959 213891 -202114456 + L1M2 LINE L1 4308 5247 -899 2082 95 4 0 chr4 213891 214153 -202114194 + AluSp SINE Alu 38 300 -13 2326 231 57 52 chr4 214153 214274 -202114073 + L1M2 LINE L1 5247 5366 -780 225 242 16 0 chr4 214277 214339 -202114008 + L1M2 LINE L1 5518 5580 -720 1010 87 0 0 chr4 214343 214470 -202113877 + AluY SINE Alu 1 127 -184 598 317 74 43 chr4 214648 215137 -202113210 - L1M3a LINE L1 -5106 849 346 244 325 12 25 chr4 215133 215296 -202113051 - L1M3a LINE L1 -5251 704 544 * 280 272 19 29 chr4 215324 215427 -202112920 - L1M3a LINE L1 -5729 226 125 * 724 273 33 4 chr4 215425 215696 -202112651 - L1MB2 LINE L1 -180 5991 5713 844 157 35 12 chr4 215696 215868 -202112479 + MSTA LTR MaLR 1 176 -252 801 219 109 21 chr4 216446 216684 -202111663 + MSTA LTR MaLR 170 428 0 761 107 0 0 chr4 216736 216839 -202111508 - AluY SINE Alu -208 103 1 1252 270 75 12 chr4 216905 217820 -202110527 + L1M3 LINE L1 4685 5655 -513 906 78 0 9 chr4 217843 217959 -202110388 + Alu SINE Alu 175 289 -21 257 245 43 0 chr4 217969 218063 -202110284 - L1 LINE L1 -1517 4517 4420 2076 122 7 0 chr4 218096 218391 -202109956 + AluSx SINE Alu 1 297 -15 2133 94 7 0 chr4 218450 218738 -202109609 - AluY SINE Alu -21 290 1 673 115 33 8 chr4 218793 218915 -202109432 + L1PA13 LINE L1 6035 6159 -4 644 286 68 4 chr4 218942 219253 -202109094 - L1MB2 LINE L1 -148 6259 5911 375 305 71 13 chr4 219255 219481 -202108866 - L1MB2 LINE L1 -1295 5087 4849 1205 159 5 24 chr4 219649 219857 -202108490 + AluJb SINE Alu 84 287 -25 269 258 47 39 chr4 220549 220677 -202107670 + MER67C LTR ERV1 8 136 -574 2255 101 3 3 chr4 221073 221369 -202106978 - AluSc SINE Alu -13 296 1 707 302 38 18 chr4 221567 222039 -202106308 - L1MB2 LINE L1 -4452 1930 1373 2243 92 0 10 chr4 222039 222332 -202106015 - AluY SINE Alu -17 294 5 1568 248 75 51 chr4 222359 222717 -202105630 - L1 LINE L1 -2993 3041 2693 2277 84 3 7 chr4 222717 223016 -202105331 + AluY SINE Alu 1 298 -13 1568 248 75 51 chr4 223016 223601 -202104746 - L1 LINE L1 -3341 2693 2075 482 280 84 2 chr4 223608 223928 -202104419 - MSTD LTR MaLR 0 396 1 233 245 32 0 chr4 223957 224051 -202104296 - L1 LINE L1 -3991 2044 1948 1434 228 0 24 chr4 224215 224513 -202103834 - AluJb SINE Alu -21 291 1 454 162 0 0 chr4 224565 224639 -202103708 - AluJo SINE Alu -178 134 61 2187 285 51 28 chr4 224793 225962 -202102385 - L1 LINE L1 -4732 1233 302 729 312 70 23 chr4 225964 226307 -202102040 - L1 LINE L1 -5501 454 96 1771 99 70 46 chr4 226334 226618 -202101729 - AluSq SINE Alu -22 291 1 488 267 30 86 chr4 227226 227470 -202100877 - L1MB2 LINE L1 -32 6139 5914 2397 66 0 27 chr4 227470 227771 -202100576 - AluY SINE Alu -18 293 1 488 267 30 86 chr4 227771 227829 -202100518 - L1MB2 LINE L1 -257 5914 5854 1265 52 204 5 chr4 227843 228054 -202100293 - LTR66 LTR ERVL 0 610 358 195 333 176 36 chr4 229033 229198 -202099149 + MER5A DNA MER1_type 2 189 0 193 340 103 19 chr4 229206 229362 -202098985 - MER5B DNA MER1_type -1 177 9 2239 93 0 30 chr4 229638 229939 -202098408 + AluY SINE Alu 1 292 -19 2010 155 0 7 chr4 230892 231196 -202097151 - AluSx SINE Alu -10 302 1 1009 176 11 0 chr4 231663 231850 -202096497 + MER30B DNA MER1_type 1 189 -1 2400 81 7 0 chr4 231981 232289 -202096058 + AluSx SINE Alu 1 310 -2 374 216 119 46 chr4 232384 232463 -202095884 - MER6B DNA MER2_type -657 208 136 1531 112 9 5 chr4 232463 232677 -202095670 + AluSg SINE Alu 1 215 -95 374 216 119 46 chr4 232677 232791 -202095556 - MER6B DNA MER2_type -729 136 1 2355 196 111 42 chr4 232822 233541 -202094806 - L1MA9 LINE L1 -26 6174 5406 3060 229 55 38 chr4 233551 234529 -202093818 - L1MA9 LINE L1 -816 5218 4215 705 211 0 0 chr4 234529 234662 -202093685 + FLAM_C SINE Alu 1 133 0 3060 229 55 38 chr4 234662 234889 -202093458 - L1MA9 LINE L1 -1819 4215 3993 984 303 52 65 chr4 234951 235686 -202092661 - L1MA9 LINE L1 -5106 849 125 * 1742 271 69 24 chr4 235684 235951 -202092396 - L1MB2 LINE L1 -180 5991 5737 2070 189 36 12 chr4 235951 236369 -202091978 + MSTA LTR MaLR 1 428 0 1742 271 69 24 chr4 236369 236453 -202091894 - L1MB2 LINE L1 -434 5737 5658 2302 111 0 0 chr4 236453 236751 -202091596 + AluSx SINE Alu 1 298 -14 1742 271 69 24 chr4 236751 237803 -202090544 - L1MB2 LINE L1 -513 5658 4532 242 245 20 0 chr4 237832 237934 -202090413 - L1MB2 LINE L1 -3280 2866 2763 * 598 133 0 70 chr4 237933 238061 -202090286 + L1PA13 LINE L1 6035 6153 -10 671 214 24 12 chr4 238087 238255 -202090092 - L1MB2 LINE L1 -153 6018 5849 2261 96 10 3 chr4 238258 238561 -202089786 + AluSx SINE Alu 1 305 -7 238 204 0 0 chr4 238564 238613 -202089734 - L1MB2 LINE L1 -427 5741 5693 327 321 36 7 chr4 238636 238776 -202089571 - L1 LINE L1 -1291 4855 4712 25 0 0 0 chr4 239512 239537 -202088810 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr4 239690 239719 -202088628 + AT_rich Low_complexity Low_complexity 1 29 0 4813 186 58 16 chr4 239719 240208 -202088139 - L1MA3 LINE L1 0 6193 5726 2085 111 0 23 chr4 240208 240344 -202088003 + AluSx SINE Alu 1 139 -173 2404 61 3 0 chr4 240344 240640 -202087707 + AluY SINE Alu 1 297 -14 2085 111 0 23 chr4 240640 240809 -202087538 + AluSx SINE Alu 139 299 -13 4813 186 58 16 chr4 240809 242236 -202086111 - L1MA3 LINE L1 -467 5726 4170 2193 101 0 20 chr4 242236 242532 -202085815 - AluSx SINE Alu -22 290 1 4813 186 58 16 chr4 242532 242739 -202085608 - L1MA3 LINE L1 -2023 4170 3973 2355 90 3 7 chr4 243073 243383 -202084964 - AluSc SINE Alu 0 309 1 198 0 0 0 chr4 243583 243605 -202084742 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1174 223 151 20 chr4 244747 245249 -202083098 - MER92B LTR ERV1 -10 626 59 788 253 93 27 chr4 245290 245622 -202082725 + MER21B LTR ERV1 403 756 -107 1530 197 0 21 chr4 245673 245962 -202082385 + AluJb SINE Alu 7 289 -23 185 0 40 0 chr4 246028 246053 -202082294 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1384 245 90 23 chr4 246820 247511 -202080836 - L1MA3 LINE L1 -2963 3071 2335 575 295 27 0 chr4 248035 248218 -202080129 - MSTD LTR MaLR -208 188 1 235 250 87 34 chr4 248219 248483 -202079864 - L1M4c LINE L1 -3965 2419 2142 1607 170 33 14 chr4 248512 248788 -202079559 - AluJb SINE Alu -31 281 1 387 203 0 0 chr4 248839 248913 -202079434 - AluJo SINE Alu -168 134 61 713 266 45 51 chr4 248982 249490 -202078857 - L1M4c LINE L1 -4348 2034 1472 1182 122 0 10 chr4 249539 249735 -202078612 - L1MA2 LINE L1 0 6304 6111 2028 287 63 22 chr4 249757 251001 -202077346 - L1MA3 LINE L1 -4501 1534 344 391 334 40 0 chr4 251012 251268 -202077079 - L1M4c LINE L1 -5224 1079 898 724 308 69 27 chr4 251338 251673 -202076674 - L1MA3 LINE L1 -5606 349 1 1878 131 14 3 chr4 252049 252352 -202075995 + AluSp SINE Alu 1 306 0 2332 81 0 16 chr4 252526 252835 -202075512 + AluY SINE Alu 1 304 -7 4103 200 17 52 chr4 253027 254027 -202074320 + LTR5 LTR ERVK 5 969 0 1002 145 65 11 chr4 254027 254213 -202074134 + HERVK LTR ERVK 1 196 -7047 14317 176 17 10 chr4 254234 257036 -202071311 + HERVK LTR ERVK 893 3714 -3529 630 85 0 11 chr4 257037 257131 -202071216 - Alu SINE Alu 0 311 219 1550 136 16 0 chr4 257131 257388 -202070959 + HERVK LTR ERVK 3697 3957 -3286 2376 72 0 3 chr4 257510 257803 -202070544 + AluY SINE Alu 1 292 -19 500 245 141 12 chr4 257845 258008 -202070339 + MIR SINE MIR 4 187 -75 2214 108 0 0 chr4 258410 258705 -202069642 + AluY SINE Alu 1 295 -16 899 139 36 0 chr4 260052 260217 -202068130 + L1MA3 LINE L1 6127 6297 -8 2324 108 0 0 chr4 261101 261408 -202066939 - AluSp SINE Alu -6 307 1 2429 82 3 3 chr4 265422 265726 -202062621 - AluY SINE Alu -7 304 1 622 287 56 31 chr4 266117 266613 -202061734 + L1M4c LINE L1 1288 1945 -4618 2126 142 0 0 chr4 266819 267121 -202061226 - AluSg SINE Alu -8 302 1 2100 119 20 0 chr4 267126 267428 -202060919 - AluSc SINE Alu -1 308 1 907 294 29 26 chr4 268066 268518 -202059829 - L1MB2 LINE L1 -70 6337 5885 248 268 0 24 chr4 268561 268643 -202059704 - L1MB2 LINE L1 -1022 5360 5281 * 292 187 8 12 chr4 268641 268723 -202059624 - L1MA6 LINE L1 -359 5941 5857 926 203 48 0 chr4 268840 269067 -202059280 - L1MA6 LINE L1 -725 5575 5338 1529 90 75 0 chr4 269070 269282 -202059065 + AluSq SINE Alu 3 230 -83 5438 141 30 47 chr4 269282 270371 -202057976 - MER11C LTR ERVK 0 1071 1 482 151 12 0 chr4 270371 270457 -202057890 + AluSq SINE Alu 225 311 -2 2756 226 65 16 chr4 270457 271362 -202056985 - L1MA6 LINE L1 -801 5345 4396 697 246 11 16 chr4 271366 271549 -202056798 + L1 LINE L1 3910 4091 -2055 2117 136 3 0 chr4 271608 271909 -202056438 + AluSx SINE Alu 6 307 -5 962 296 49 2 chr4 272193 272663 -202055684 - L1MB2 LINE L1 -5 6166 5675 515 286 61 10 chr4 272665 272962 -202055385 - L1MB2 LINE L1 -1295 5087 4776 385 246 97 66 chr4 272990 273318 -202055029 - L1MB2 LINE L1 -3272 3110 2794 2297 103 0 0 chr4 273318 273619 -202054728 + AluY SINE Alu 1 301 -10 385 246 97 66 chr4 273619 273692 -202054655 - L1MB2 LINE L1 -3588 2794 2725 207 0 0 0 chr4 273692 273715 -202054632 + (CA)n Simple_repeat Simple_repeat 2 24 0 385 246 97 66 chr4 273715 274242 -202054105 - L1MB2 LINE L1 -3657 2725 2156 626 313 91 11 chr4 274426 274927 -202053420 - L1MB2 LINE L1 -4456 1926 1315 521 315 95 20 chr4 274942 275288 -202053059 - L1MB2 LINE L1 -4866 1447 1076 1053 216 59 37 chr4 276903 277278 -202051069 - SVA Other Other -540 846 464 824 216 78 25 chr4 278387 278806 -202049541 - L1MA8 LINE L1 -5 6286 5773 2146 128 7 0 chr4 278908 279198 -202049149 - AluSg SINE Alu -18 292 1 498 295 135 5 chr4 279205 279398 -202048949 - MIR SINE MIR -14 248 31 7461 66 28 2 chr4 279525 280507 -202047840 + LTR13 LTR ERVK 1 1007 0 425 289 54 31 chr4 280864 281124 -202047223 + LTR60-int LTR ERV1 3959 4864 -2305 653 304 57 59 chr4 281494 282074 -202046273 + LTR60-int LTR ERV1 5343 6216 -1887 209 59 59 0 chr4 282775 282809 -202045538 + T-rich Low_complexity Low_complexity 2 37 0 263 156 0 0 chr4 282953 282998 -202045349 - Alu SINE Alu -256 45 1 517 358 47 22 chr4 284359 284809 -202043538 + LTR60-int LTR ERV1 6464 6924 -281 1971 214 58 46 chr4 285030 285578 -202042769 + LTR60 LTR ERV1 2 556 -30 242 227 30 76 chr4 285466 285598 -202042749 + TAR1 Satellite telomeric 60 185 -1926 * 1929 135 11 0 chr4 286519 286801 -202041546 + AluSc SINE Alu 1 285 -24 380 298 3 12 chr4 286869 287107 -202041240 + T-rich Low_complexity Low_complexity 1 235 0 2665 222 113 13 chr4 287246 287520 -202040827 - L1 LINE L1 -795 5351 5106 2357 93 0 0 chr4 287520 287820 -202040527 - AluSg SINE Alu -10 300 1 2665 222 113 13 chr4 287820 288401 -202039946 - L1 LINE L1 -1040 5106 4410 735 200 41 18 chr4 288433 288603 -202039744 + L1 LINE L1 3918 4091 -2055 420 70 0 99 chr4 288670 288741 -202039606 + Alu SINE Alu 1 64 -254 2356 78 0 0 chr4 288950 289267 -202039080 - AluY SINE Alu 0 317 1 345 360 56 27 chr4 289505 289900 -202038447 + HERV30 LTR ERV1 4698 5862 -2011 620 327 40 32 chr4 291965 292341 -202036006 + HERV30 LTR ERV1 6546 6924 -281 1909 224 63 35 chr4 292549 293090 -202035257 + LTR60 LTR ERV1 1 556 -30 357 248 67 0 chr4 293186 293291 -202035056 - L1MB2 LINE L1 -167 6004 5893 289 156 16 0 chr4 293783 293847 -202034500 + L1MA2 LINE L1 6121 6185 -119 1231 117 0 126 chr4 293847 293891 -202034456 + AluSp SINE Alu 100 148 -165 2276 61 7 4 chr4 293891 294169 -202034178 + AluY SINE Alu 2 280 -31 1231 117 0 126 chr4 294169 294354 -202033993 + AluSp SINE Alu 148 300 -13 539 141 52 37 chr4 294354 294489 -202033858 + L1MA3 LINE L1 6169 6305 0 373 195 0 3 chr4 294711 294785 -202033562 + AluS SINE Alu 1 65 -238 2824 215 76 15 chr4 294887 295934 -202032413 - L1MB2 LINE L1 -743 5403 4396 728 251 11 16 chr4 295935 296122 -202032225 + L1 LINE L1 3907 4092 -2054 525 305 106 13 chr4 296447 296909 -202031438 - L1MB2 LINE L1 -1 6406 5902 732 286 74 14 chr4 296933 297608 -202030739 - L1MB2 LINE L1 -1332 5050 2709 525 220 118 52 chr4 297863 298268 -202030079 - L1MB2 LINE L1 -3897 2487 2056 777 280 46 41 chr4 298446 298899 -202029448 - L1M4c LINE L1 -4633 1751 1317 324 336 51 43 chr4 299532 299788 -202028559 - L1M4c LINE L1 -5628 675 418 2219 22 7 11 chr4 302048 302323 -202026024 - AluYa5 SINE Alu -1 310 37 2238 103 0 0 chr4 302633 302933 -202025414 - AluY SINE Alu -10 301 2 578 208 9 123 chr4 353507 353719 -201974628 - AluJb SINE Alu -115 197 10 652 265 69 26 chr4 353728 354075 -201974272 + L1 LINE L1 4308 4669 -1477 2135 61 18 4 chr4 354088 354395 -201973952 + AluY SINE Alu 1 311 0 1033 198 52 71 chr4 354413 354737 -201973610 + L1MA9 LINE L1 5969 6286 -26 369 236 133 15 chr4 354764 354945 -201973402 + MER6 DNA MER2_type -65 861 -4 200 216 0 0 chr4 355094 355131 -201973216 - MIR SINE MIR -17 245 209 576 134 0 0 chr4 355184 355266 -201973081 - MER30B DNA MER1_type 0 190 109 2086 93 10 10 chr4 355267 355569 -201972778 + AluSc SINE Alu 1 302 -7 1623 216 74 13 chr4 355572 356159 -201972188 - MER67C LTR ERV1 -31 679 1 350 295 79 44 chr4 356843 357204 -201971143 - MER21B LTR ERV1 -75 856 416 346 276 48 28 chr4 357236 357381 -201970966 + MER93a LTR ERV1 244 391 -11 1947 106 34 0 chr4 358082 358374 -201969973 - AluSq SINE Alu -11 302 1 216 254 0 0 chr4 358476 358535 -201969812 + (CACG)n Simple_repeat Simple_repeat 1 59 0 431 218 92 0 chr4 358652 358794 -201969553 - MER33 DNA MER1_type -14 349 195 229 269 0 0 chr4 358795 358847 -201969500 + LTR30 LTR ERV1 1 52 -670 808 136 8 15 chr4 358847 358979 -201969368 + LTR12 LTR ERV1 53 183 -531 279 253 30 20 chr4 359103 359202 -201969145 + LTR30 LTR ERV1 544 643 -79 678 122 20 0 chr4 359204 359302 -201969045 + LTR12 LTR ERV1 615 714 0 2374 72 0 3 chr4 359324 359629 -201968718 + AluY SINE Alu 2 305 -6 451 287 26 0 chr4 359648 359763 -201968584 - MER33 DNA MER1_type -206 118 1 693 191 52 111 chr4 359967 360127 -201968220 - MER61D LTR ERV1 -17 732 564 2048 96 7 13 chr4 360127 360428 -201967919 - AluSq SINE Alu -3 310 12 693 191 52 111 chr4 360428 360474 -201967873 - MER61D LTR ERV1 -185 564 340 3807 132 20 0 chr4 361149 361737 -201966610 - MER51C LTR ERV1 0 640 1 1219 275 123 24 chr4 361873 362335 -201966012 - MLT1H LTR MaLR 0 549 34 2006 123 3 3 chr4 362335 362636 -201965711 - AluSq SINE Alu -12 301 1 1219 275 123 24 chr4 362636 362667 -201965680 - MLT1H LTR MaLR -515 34 7 4869 194 23 6 chr4 362754 364189 -201964158 + L1PA16 LINE L1 4705 6162 -4 302 255 114 46 chr4 365698 365838 -201962509 + L1ME1 LINE L1 1087 1216 -5180 195 42 0 0 chr4 365838 365862 -201962485 + (TA)n Simple_repeat Simple_repeat 2 25 0 302 255 114 46 chr4 365862 365984 -201962363 + L1ME1 LINE L1 1216 1367 -5029 1455 232 81 45 chr4 366040 366310 -201962037 + L1ME1 LINE L1 2946 3205 -3010 279 0 0 0 chr4 366310 366341 -201962006 + (CA)n Simple_repeat Simple_repeat 2 32 0 1455 232 81 45 chr4 366341 366711 -201961636 + L1ME1 LINE L1 3205 3609 -2606 2702 216 77 64 chr4 366721 366988 -201961359 + L1ME1 LINE L1 5108 5370 -865 3412 148 60 5 chr4 366988 367590 -201960757 - MER41B LTR ERV1 0 635 1 2702 216 77 64 chr4 367590 368389 -201959958 + L1ME1 LINE L1 5370 6185 -50 629 189 9 0 chr4 368389 368500 -201959847 - FRAM SINE Alu -19 157 46 339 149 0 1 chr4 368518 368657 -201959690 + Alu SINE Alu 244 372 0 1674 153 13 13 chr4 368853 369153 -201959194 - AluSx SINE Alu -12 300 1 243 319 14 0 chr4 369466 369535 -201958812 - L2 LINE L2 -82 3190 3121 1623 203 56 43 chr4 369568 370011 -201958336 + LTR2 LTR ERV1 1 449 0 1522 147 25 81 chr4 370913 371282 -201957065 - MER4A LTR ERV1 -2 662 256 464 133 44 11 chr4 371277 371367 -201956980 - MER4A LTR ERV1 -566 98 6 * 266 241 169 96 chr4 371563 371812 -201956535 + L2 LINE L2 2630 2896 -418 202 188 31 115 chr4 372261 372357 -201955990 - MIR SINE MIR -82 126 39 802 235 270 27 chr4 372918 373659 -201954688 - L2 LINE L2 -5 3308 2364 216 246 18 0 chr4 373721 373778 -201954569 + L2 LINE L2 2921 2978 -294 279 246 114 18 chr4 374003 374117 -201954230 + MIR SINE MIR 18 142 -66 21 0 0 0 chr4 374634 374655 -201953692 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 374939 374961 -201953386 + GC_rich Low_complexity Low_complexity 1 22 0 40 59 0 0 chr4 377924 377992 -201950355 + AT_rich Low_complexity Low_complexity 1 68 0 390 268 117 0 chr4 378195 378320 -201950027 - MIR SINE MIR -63 145 24 522 243 185 14 chr4 378347 378569 -201949778 + MIR SINE MIR 2 261 -1 249 275 29 0 chr4 379458 379527 -201948820 + (TCCA)n Simple_repeat Simple_repeat 3 73 0 322 200 156 22 chr4 379984 380074 -201948273 + MIR SINE MIR 44 145 -63 2704 275 20 12 chr4 380295 381045 -201947302 + L1PA12 LINE L1 524 1279 -6302 1705 141 121 0 chr4 381045 381358 -201946989 - MER61C LTR ERV1 0 434 84 10541 125 22 22 chr4 381381 382835 -201945512 - MER61C-int LTR ERV1 -9 5208 3755 2029 83 0 4 chr4 382835 383089 -201945258 + AluY SINE Alu 41 293 -18 10541 125 22 22 chr4 383089 383129 -201945218 - MER61C-int LTR ERV1 -1462 3755 3716 2146 112 0 27 chr4 383129 383424 -201944923 + AluSg SINE Alu 1 287 -23 10541 125 22 22 chr4 383424 385062 -201943285 - MER61C-int LTR ERV1 -1501 3716 1971 1194 170 48 15 chr4 385040 385311 -201943036 - MER61C-int LTR ERV1 -3577 1640 1361 * 4143 142 81 62 chr4 385306 385438 -201942909 - MER61C-int LTR ERV1 -4004 1213 1085 2163 122 0 0 chr4 385438 385732 -201942615 + AluSc SINE Alu 1 294 -15 270 81 0 0 chr4 385732 385769 -201942578 + (TG)n Simple_repeat Simple_repeat 2 38 0 4143 142 81 62 chr4 385769 385983 -201942364 - MER61C-int LTR ERV1 -4132 1085 877 2023 130 20 0 chr4 385983 386275 -201942072 - AluSg SINE Alu -12 298 1 4143 142 81 62 chr4 386275 387091 -201941256 - MER61C-int LTR ERV1 -4340 877 4 1027 151 53 7 chr4 387099 387208 -201941139 - MER61C LTR ERV1 -6 419 317 204 40 0 0 chr4 387208 387233 -201941114 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1027 151 53 7 chr4 387233 387422 -201940925 - MER61C LTR ERV1 -108 317 84 248 172 0 52 chr4 387437 387495 -201940852 + L1PA12 LINE L1 736 790 -6791 * 1257 196 39 15 chr4 387476 387780 -201940567 + L1PA12 LINE L1 1358 2460 -5124 1474 182 56 25 chr4 388112 388470 -201939877 + THE1C LTR MaLR 1 369 -6 8897 145 62 3 chr4 388475 389967 -201938380 + THE1C-int LTR MaLR 1 1580 0 518 185 23 39 chr4 389967 390097 -201938250 + THE1C LTR MaLR 1 128 -247 1706 145 0 0 chr4 390097 390338 -201938009 - AluSg SINE Alu -69 241 1 394 159 0 0 chr4 390338 390407 -201937940 + MSTA LTR MaLR 360 428 0 239 218 0 64 chr4 390615 390693 -201937654 + T-rich Low_complexity Low_complexity 2 74 0 21 71 0 0 chr4 390766 390808 -201937539 + AT_rich Low_complexity Low_complexity 1 42 0 203 158 0 0 chr4 391090 391128 -201937219 + (CA)n Simple_repeat Simple_repeat 1 38 0 923 292 49 35 chr4 391148 391796 -201936551 + L1MB2 LINE L1 4539 5195 -951 1299 252 47 70 chr4 391883 392146 -201936201 + L1MB2 LINE L1 5341 5608 -563 1847 200 0 0 chr4 392146 392446 -201935901 + AluJb SINE Alu 12 311 -1 1299 252 47 70 chr4 392446 392796 -201935551 + L1MB2 LINE L1 5608 5940 -231 23 0 0 0 chr4 393795 393818 -201934529 + AT_rich Low_complexity Low_complexity 1 23 0 733 168 37 47 chr4 394341 394367 -201933980 + L1MA3 LINE L1 6118 6143 -162 2237 112 0 3 chr4 394367 394670 -201933677 + AluSg SINE Alu 1 302 -8 733 168 37 47 chr4 394670 394833 -201933514 + L1MA3 LINE L1 6143 6305 0 257 371 41 22 chr4 396743 397010 -201931337 + L1MB2 LINE L1 7 278 -5613 302 310 180 4 chr4 397385 397630 -201930717 + L1MB2 LINE L1 369 656 -5316 723 285 88 13 chr4 397630 398057 -201930290 + L1MB2 LINE L1 903 1513 -4638 348 313 125 6 chr4 398233 398409 -201929938 + L1MB2 LINE L1 1627 1823 -4149 464 274 78 32 chr4 398499 398718 -201929629 + L1MB2 LINE L1 1816 2044 -3928 2360 87 10 13 chr4 398734 399045 -201929302 - AluY SINE Alu -1 310 1 624 284 50 27 chr4 399228 399309 -201929038 + L1MB2 LINE L1 2204 2282 -3688 186 43 0 0 chr4 399309 399332 -201929015 + (TG)n Simple_repeat Simple_repeat 2 24 0 624 284 50 27 chr4 399332 399694 -201928653 + L1MB2 LINE L1 2282 2657 -3313 2349 107 3 3 chr4 399699 400009 -201928338 + AluSp SINE Alu 1 310 -3 463 289 63 14 chr4 400089 400373 -201927974 + L1MB2 LINE L1 4373 4670 -1300 918 278 72 11 chr4 400386 400828 -201927519 + L1MB2 LINE L1 5499 5967 -28 2690 43 3 6 chr4 401199 401548 -201926799 + L1PA8 LINE L1 5805 6152 -20 2026 83 72 10 chr4 401549 401916 -201926431 + LTR7 LTR ERV1 1 450 0 571 177 24 79 chr4 401936 402063 -201926284 - L1 LINE L1 -2085 4061 3943 2312 86 14 0 chr4 402063 402354 -201925993 + AluSp SINE Alu 1 295 -18 571 177 24 79 chr4 402354 402390 -201925957 - L1 LINE L1 -2203 3943 3907 1578 207 58 50 chr4 402405 402942 -201925405 + L1MB2 LINE L1 4400 4940 -1206 1084 266 62 23 chr4 402944 403390 -201924957 + L1MB2 LINE L1 5662 6130 -41 1890 118 93 0 chr4 403390 403670 -201924677 + AluSp SINE Alu 1 306 -7 1084 266 62 23 chr4 403670 403708 -201924639 + L1MB2 LINE L1 6130 6165 -6 2270 70 0 0 chr4 404075 404382 -201923965 + AluY SINE Alu 1 307 0 2342 267 76 30 chr4 404393 406002 -201922345 + L1MA3 LINE L1 357 1859 -4176 369 173 0 13 chr4 406074 406149 -201922198 + AluJo SINE Alu 61 134 -168 1594 211 0 14 chr4 406188 406473 -201921874 + AluJb SINE Alu 1 281 -31 258 213 0 0 chr4 406700 406761 -201921586 + L1MA3 LINE L1 1969 2029 -4006 933 283 92 17 chr4 406806 407163 -201921184 + MSTD LTR MaLR 1 384 -12 407 289 66 17 chr4 407173 407460 -201920887 + L1MA3 LINE L1 2071 2371 -3663 592 111 10 20 chr4 407460 407559 -201920788 + MER4A LTR ERV1 1 98 -566 1526 117 27 94 chr4 407608 407906 -201920441 + MER4A LTR ERV1 372 649 -15 392 235 138 18 chr4 407912 408129 -201920218 + L1MA3 LINE L1 2374 2616 -3418 1188 184 28 14 chr4 408138 408356 -201919991 - AluJb SINE Alu -91 221 1 733 264 69 39 chr4 408374 408740 -201919607 - MER21B LTR ERV1 -83 848 402 1063 246 110 25 chr4 408776 409278 -201919069 + MER92B LTR ERV1 46 402 -10 3309 217 64 5 chr4 410989 411747 -201916600 + L1MA3 LINE L1 3973 4793 -1241 1891 163 7 3 chr4 411747 412041 -201916306 + AluSx SINE Alu 1 295 -17 3309 217 64 5 chr4 412041 412172 -201916175 + L1MA3 LINE L1 4793 4915 -1119 287 104 0 21 chr4 412172 412220 -201916127 + LTR22B LTR ERVK 1 47 -445 1652 104 4 24 chr4 412230 412480 -201915867 + LTR22B LTR ERVK 248 492 0 5132 177 27 19 chr4 412483 413764 -201914583 + L1MA3 LINE L1 4913 6192 -1 26 0 0 0 chr4 413764 413790 -201914557 + AT_rich Low_complexity Low_complexity 1 26 0 263 350 45 29 chr4 413813 414056 -201914291 + L1MB2 LINE L1 35 281 -5610 1997 81 78 0 chr4 414223 414494 -201913853 + AluY SINE Alu 6 297 -14 443 305 85 20 chr4 414497 414697 -201913650 + L1MB2 LINE L1 4463 4675 -1295 899 270 38 15 chr4 414699 415040 -201913307 + L1MB2 LINE L1 5499 5847 -148 558 168 50 0 chr4 415075 415194 -201913153 - L1PA13 LINE L1 -2 6161 6037 1335 281 45 16 chr4 415334 415939 -201912408 + L1MB1 LINE L1 4535 5156 -990 1886 231 91 12 chr4 416030 416416 -201911931 + L1MB1 LINE L1 5283 5744 -424 2151 186 26 7 chr4 416416 416836 -201911511 - MSTA LTR MaLR 0 428 1 1886 231 91 12 chr4 416836 417106 -201911241 + L1MB1 LINE L1 5744 5991 -177 556 324 18 77 chr4 417104 417561 -201910786 + L1M3a LINE L1 125 554 -5401 * 306 226 0 0 chr4 417703 417765 -201910582 + MER6B DNA MER2_type 3 64 -212 572 181 0 0 chr4 417815 417909 -201910438 - AluS SINE Alu -217 96 3 477 228 58 92 chr4 417914 418029 -201910318 - L1 LINE L1 -1717 4317 4200 599 186 0 64 chr4 418029 418169 -201910178 + FLAM_C SINE Alu 1 131 -2 477 228 58 92 chr4 418169 418412 -201909935 - L1 LINE L1 -1834 4200 3971 328 291 0 18 chr4 418526 418636 -201909711 - L1 LINE L1 -5149 806 699 1418 102 0 11 chr4 418644 418830 -201909517 + AluSg/x SINE Alu 103 286 -24 23 0 0 0 chr4 418837 418860 -201909487 + AT_rich Low_complexity Low_complexity 1 23 0 2591 233 50 25 chr4 418897 419778 -201908569 + L1MA9 LINE L1 4464 5366 -780 1758 199 72 47 chr4 419784 420488 -201907859 + L1MA9 LINE L1 5521 6277 -35 420 230 110 31 chr4 420526 420717 -201907630 + MER6B DNA MER2_type 4 209 -1 1751 99 119 58 chr4 420947 421240 -201907107 + AluSx SINE Alu 1 311 -1 1106 123 0 64 chr4 421267 421470 -201906877 - MER30B DNA MER1_type 0 190 1 713 71 0 0 chr4 421673 421771 -201906576 + L1PA2 LINE L1 6057 6154 -1 181 174 92 184 chr4 423759 423868 -201904479 - MIR SINE MIR -9 253 155 195 244 0 0 chr4 424755 424796 -201903551 + L2 LINE L2 3191 3231 -82 2553 144 41 0 chr4 425525 425941 -201902406 - LTR56 LTR ERV1 -12 433 1 2064 211 145 21 chr4 426410 427037 -201901310 - MER67C LTR ERV1 -5 705 1 2311 67 3 24 chr4 427194 427492 -201900855 + AluY SINE Alu 1 292 -19 385 257 82 79 chr4 428028 428382 -201899965 - MER21A LTR ERV1 -75 856 502 315 298 8 16 chr4 428402 428526 -201899821 + MER93a LTR ERV1 244 366 -36 297 230 0 0 chr4 429343 429417 -201898930 + (CA)n Simple_repeat Simple_repeat 2 75 0 23 0 0 0 chr4 429533 429556 -201898791 + AT_rich Low_complexity Low_complexity 1 23 0 626 209 71 112 chr4 429559 429855 -201898492 - MER33 DNA MER1_type -40 284 1 739 205 32 30 chr4 430061 430269 -201898078 - MER61D LTR ERV1 -17 743 338 3504 129 51 5 chr4 430935 431508 -201896839 - MER51C LTR ERV1 0 640 2 940 175 30 0 chr4 431520 431686 -201896661 - MER67C LTR ERV1 -259 451 281 2548 63 0 3 chr4 431777 432080 -201896267 - AluY SINE Alu -9 302 1 43 112 0 0 chr4 433169 433366 -201894981 + AT_rich Low_complexity Low_complexity 1 197 0 291 242 0 61 chr4 433785 433884 -201894463 - MER67C LTR ERV1 -477 233 141 2223 113 0 0 chr4 434617 435082 -201893265 - AluSg SINE Alu 0 465 1 725 287 85 7 chr4 435140 435433 -201892914 - MER21B LTR ERV1 -125 738 423 2421 97 0 3 chr4 435869 436177 -201892170 - AluSq SINE Alu -6 307 1 1901 121 3 25 chr4 436477 436759 -201891588 + AluSq SINE Alu 28 303 -10 347 214 256 0 chr4 437465 437587 -201890760 + MIR SINE MIR 32 179 -57 2218 96 4 0 chr4 437796 438117 -201890230 + AluSp SINE Alu 3 324 0 456 283 65 27 chr4 438991 439175 -201889172 - MARNA DNA Mariner -196 390 200 29098 74 8 67 chr4 439594 440783 -201887564 + L1P LINE L1 11 1267 -4879 5550 153 20 17 chr4 440783 441733 -201886614 + LTR5 LTR ERVK 17 969 0 29098 74 8 67 chr4 441733 444876 -201883471 + L1P LINE L1 1267 4092 -2054 182 319 103 69 chr4 445139 445371 -201882976 + MIR SINE MIR 14 253 -9 6393 93 4 15 chr4 446448 446939 -201881408 + L1PA14 LINE L1 4872 5367 -794 2383 95 0 0 chr4 446939 447243 -201881104 + AluY SINE Alu 2 305 -6 6393 93 4 15 chr4 447243 448046 -201880301 + L1PA14 LINE L1 5367 6161 0 9261 58 4 2 chr4 450376 452317 -201876030 - L1PA5 LINE L1 0 6154 4207 201 132 0 0 chr4 453806 453844 -201874503 + (GA)n Simple_repeat Simple_repeat 1 38 0 23 0 0 0 chr4 455097 455120 -201873227 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr4 455262 455282 -201873065 + (CAG)n Simple_repeat Simple_repeat 3 22 0 272 304 22 0 chr4 455451 455543 -201872804 - MIR SINE MIR -60 148 55 890 285 14 0 chr4 456266 456487 -201871860 - MER58A DNA MER1_type 0 224 1 282 74 56 0 chr4 456615 456669 -201871678 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 694 303 51 63 chr4 458289 458701 -201869646 - MLT1I LTR MaLR 0 409 3 318 260 0 10 chr4 458948 459140 -201869207 + (TTAGGG)n Simple_repeat Simple_repeat 1 190 0 1646 168 9 7 chr4 459826 460171 -201868176 - MER4A LTR ERV1 0 664 261 667 121 0 10 chr4 460171 460270 -201868077 - MER4A LTR ERV1 -566 98 1 4233 208 177 73 chr4 461152 461677 -201866670 - L1MC3 LINE L1 -1 7784 7315 279 219 14 14 chr4 461677 461750 -201866597 - MLT1F1 LTR MaLR -450 117 45 4233 208 177 73 chr4 461750 462247 -201866100 - L1MC3 LINE L1 -470 7315 6871 3531 208 25 62 chr4 462247 463248 -201865099 - LTR5 LTR ERVK 0 969 6 4233 208 177 73 chr4 463248 463576 -201864771 - L1MC3 LINE L1 -914 6871 6578 1757 184 36 65 chr4 463576 464021 -201864326 - MSTB1 LTR MaLR 0 432 1 4233 208 177 73 chr4 464021 464429 -201863918 - L1MC3 LINE L1 -1207 6578 5762 270 215 15 100 chr4 464576 464669 -201863678 - LTR37A LTR ERV1 -304 122 41 1612 152 98 0 chr4 464669 464933 -201863414 - AluJb SINE Alu -22 290 1 270 215 15 100 chr4 464933 464969 -201863378 - LTR37A LTR ERV1 -385 41 4 1875 189 29 11 chr4 464985 465360 -201862987 - MER31-int LTR ERV1 -696 4240 3859 1297 263 47 8 chr4 465401 465762 -201862585 - LTR10C LTR ERV1 -29 562 188 225 0 0 0 chr4 465784 465809 -201862538 + (CA)n Simple_repeat Simple_repeat 2 26 0 681 174 12 81 chr4 465881 466053 -201862294 - MER31-int LTR ERV1 -1064 3872 3713 7545 34 0 3 chr4 466154 467508 -201860839 - L1PA4 LINE L1 -3 6152 4811 2462 213 47 72 chr4 467508 468147 -201860200 - MER31-int LTR ERV1 -1207 3729 3112 2234 93 0 0 chr4 468147 468456 -201859891 - AluY SINE Alu 0 310 2 2462 213 47 72 chr4 468456 468626 -201859721 - MER31-int LTR ERV1 -1824 3112 2939 1222 214 82 55 chr4 468640 469149 -201859198 - MER31-int LTR ERV1 -2705 2231 1709 1132 154 75 143 chr4 469158 469612 -201858735 + LTR60 LTR ERV1 127 549 -37 * 4151 137 75 166 chr4 469452 472081 -201856266 + TAR1 Satellite telomeric 1 2388 -233 1409 6 11 11 chr4 472081 472261 -201856086 + (TTAGGG)n Simple_repeat Simple_repeat 1 180 0 1857 272 70 19 chr4 672276 672344 -201656003 + L1M4 LINE L1 2197 2260 -3886 2060 120 0 7 chr4 672344 672652 -201655695 + AluSx SINE Alu 2 307 -5 1857 272 70 19 chr4 672652 673274 -201655073 + L1M4 LINE L1 2260 2922 -3224 1894 140 105 79 chr4 673410 673765 -201654582 + Tigger1 DNA MER2_type 1892 2236 -182 2131 109 0 10 chr4 673765 674068 -201654279 + AluSg SINE Alu 1 300 -10 1894 140 105 79 chr4 674068 674100 -201654247 + Tigger1 DNA MER2_type 2236 2266 -152 1851 173 0 7 chr4 674100 674406 -201653941 + AluJb SINE Alu 1 304 -8 1894 140 105 79 chr4 674406 674523 -201653824 + Tigger1 DNA MER2_type 2266 2410 -8 331 294 9 0 chr4 675009 675118 -201653229 + L1MEc LINE L1 636 745 -5651 281 75 0 0 chr4 675125 675165 -201653182 + Alu SINE Alu 1 40 -263 318 332 5 53 chr4 675335 675426 -201652921 + HAL1 LINE L1 1 80 -2427 2192 118 0 0 chr4 675426 675731 -201652616 + AluSg SINE Alu 1 305 -5 318 332 5 53 chr4 675731 675829 -201652518 + HAL1 LINE L1 80 181 -2326 286 261 85 39 chr4 676218 676371 -201651976 + HAL1 LINE L1 689 848 -1659 677 226 35 49 chr4 676471 676661 -201651686 - MER54B LTR ERVL -114 679 491 1851 126 10 7 chr4 676661 676954 -201651393 - AluSx SINE Alu -18 294 1 677 226 35 49 chr4 676954 676989 -201651358 - MER54B LTR ERVL -302 491 457 322 311 136 60 chr4 677390 678229 -201650118 - L1M2 LINE L1 -5578 1271 369 1370 249 68 66 chr4 679010 679112 -201649235 - L1M4 LINE L1 -876 5270 5170 1474 187 21 7 chr4 679112 679396 -201648951 + AluJo SINE Alu 1 288 -24 1370 249 68 66 chr4 679396 680076 -201648271 - L1M4 LINE L1 -976 5170 4487 707 82 21 0 chr4 680186 680283 -201648064 - AluSg/x SINE Alu -14 295 197 1761 111 0 8 chr4 680285 680529 -201647818 - AluSg SINE Alu -68 242 1 * 2033 113 7 20 chr4 680529 680829 -201647518 - AluSq SINE Alu -17 296 1 1166 131 0 17 chr4 680974 681150 -201647197 + AluJo SINE Alu 17 189 -123 726 226 0 20 chr4 681307 681453 -201646894 + AluJb SINE Alu 150 292 -20 22 70 0 0 chr4 681625 681668 -201646679 + GC_rich Low_complexity Low_complexity 1 43 0 211 272 27 34 chr4 681696 681843 -201646504 + (CCCCG)n Simple_repeat Simple_repeat 4 149 0 * 337 275 0 67 chr4 681745 681938 -201646409 + C-rich Low_complexity Low_complexity 1 180 0 22 56 0 0 chr4 681965 682001 -201646346 + GC_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr4 682023 682055 -201646292 + GC_rich Low_complexity Low_complexity 1 32 0 478 172 57 0 chr4 685273 685430 -201642917 + (CAGAGA)n Simple_repeat Simple_repeat 1 166 0 2137 184 44 0 chr4 685603 686038 -201642309 - MER54B LTR ERVL -339 454 1 344 179 0 38 chr4 686073 686179 -201642168 + HAL1 LINE L1 1029 1130 -1377 2397 88 0 0 chr4 686179 686484 -201641863 + AluSx SINE Alu 1 305 -7 237 291 63 0 chr4 686484 686563 -201641784 + HAL1 LINE L1 2049 2132 -375 2417 76 0 3 chr4 687264 687568 -201640779 - AluSg SINE Alu -7 303 1 1337 153 19 0 chr4 687678 687894 -201640453 + AluJb SINE Alu 85 304 -8 189 0 0 0 chr4 688297 688318 -201640029 + (A)n Simple_repeat Simple_repeat 1 21 0 2203 90 3 13 chr4 688322 688623 -201639724 + AluSx SINE Alu 1 298 -14 385 234 46 46 chr4 691131 691306 -201637041 + (CAGCC)n Simple_repeat Simple_repeat 1 175 0 579 176 12 18 chr4 693131 693301 -201635046 + (TCTCTG)n Simple_repeat Simple_repeat 3 171 0 353 314 45 125 chr4 693940 694073 -201634274 - L1M4 LINE L1 -2972 3174 3032 2221 106 3 0 chr4 694073 694374 -201633973 - AluSp SINE Alu -11 302 1 2022 91 60 24 chr4 694382 694680 -201633667 - AluSg SINE Alu -1 309 1 353 314 45 125 chr4 694680 694730 -201633617 - L1M4 LINE L1 -3121 3025 2973 1323 199 64 18 chr4 694730 695012 -201633335 - AluJo SINE Alu -4 298 4 353 314 45 125 chr4 695012 695289 -201633058 - L1M4 LINE L1 -3173 2973 2742 407 349 88 0 chr4 695350 695542 -201632805 + MIR SINE MIR 7 215 -47 897 204 19 0 chr4 698098 698255 -201630092 - FRAM SINE Alu -6 160 1 2150 76 38 3 chr4 698283 698573 -201629774 + AluY SINE Alu 1 300 -11 1829 87 61 4 chr4 698576 698840 -201629507 + AluSq SINE Alu 1 279 -34 418 350 154 28 chr4 700270 700633 -201627714 - L1M4 LINE L1 -787 5359 4951 2174 93 13 7 chr4 700814 701116 -201627231 - AluSp SINE Alu -1 312 9 2033 125 0 7 chr4 701126 701422 -201626925 - AluSx SINE Alu -18 294 1 951 181 43 11 chr4 701522 701710 -201626637 - L1MB3 LINE L1 -1 6182 5989 270 316 118 0 chr4 701738 701874 -201626473 + L1MB8 LINE L1 6026 6177 -1 1670 145 71 18 chr4 702527 702810 -201625537 - AluJo SINE Alu -14 298 1 1228 207 13 53 chr4 702812 703098 -201625249 + L1ME1 LINE L1 4895 5164 -982 3543 154 71 119 chr4 703098 703694 -201624653 + MER21A LTR ERV1 1 533 -398 2210 119 0 0 chr4 703694 703997 -201624350 + AluSx SINE Alu 1 303 -9 3543 154 71 119 chr4 703997 704375 -201623972 + MER21A LTR ERV1 533 928 -3 1228 207 13 53 chr4 704375 704465 -201623882 + L1ME1 LINE L1 5164 5256 -890 941 88 0 0 chr4 704466 704591 -201623756 + AluSx SINE Alu 1 125 -188 189 171 0 0 chr4 704591 704626 -201623721 + (CATATA)n Simple_repeat Simple_repeat 4 38 0 263 221 23 0 chr4 704631 704717 -201623630 + L1MC4 LINE L1 6614 6701 -1341 832 157 0 0 chr4 704718 704852 -201623495 + AluSx SINE Alu 1 134 -178 207 162 0 0 chr4 704852 704889 -201623458 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 246 218 51 0 chr4 704894 704972 -201623375 + L1MC4 LINE L1 6614 6695 -1347 1160 147 0 0 chr4 704972 705142 -201623205 + AluSx SINE Alu 123 292 -18 2175 92 0 30 chr4 705146 705450 -201622897 + AluSg SINE Alu 1 295 -15 481 154 86 8 chr4 705456 705573 -201622774 + L1ME1 LINE L1 5258 5383 -950 1103 221 24 4 chr4 705629 705883 -201622464 + Tigger3(Golem) DNA MER2_type 2771 3029 0 2010 241 52 10 chr4 705887 706496 -201621851 + L1ME1 LINE L1 5352 5986 -180 813 304 67 52 chr4 706592 706781 -201621566 + L1 LINE L1 2745 2930 -3216 2157 113 0 10 chr4 706781 707082 -201621265 + AluSg SINE Alu 1 298 -12 813 304 67 52 chr4 707082 707313 -201621034 + L1 LINE L1 2930 3171 -2975 762 310 21 7 chr4 707409 707502 -201620845 + MER7A DNA MER2_type 1 91 -2947 2147 61 40 24 chr4 707502 707798 -201620549 - AluY SINE Alu -10 301 1 1918 126 42 3 chr4 707798 708084 -201620263 - AluSx SINE Alu -15 297 1 762 310 21 7 chr4 708084 708276 -201620071 + MER7A DNA MER2_type 90 289 -57 644 354 51 60 chr4 708359 708858 -201619489 + L1 LINE L1 4208 4701 -1445 4368 157 22 1 chr4 709506 710244 -201618103 + L1MB3 LINE L1 5431 6183 0 5331 105 16 5 chr4 710249 711590 -201616757 + L1PA10 LINE L1 4724 6150 -18 2081 98 0 33 chr4 711590 711897 -201616450 - AluSq SINE Alu -16 297 1 1281 185 8 13 chr4 712099 712337 -201616010 + AluJb SINE Alu 1 237 -75 272 25 50 0 chr4 712344 712384 -201615963 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 322 381 59 23 chr4 712603 713107 -201615240 + L1 LINE L1 3081 3689 -2457 1141 309 127 35 chr4 713777 714157 -201614190 - L1ME1 LINE L1 -66 6100 5756 2542 59 0 0 chr4 714157 714462 -201613885 - AluY SINE Alu -6 305 1 1141 309 127 35 chr4 714462 714797 -201613550 - L1ME1 LINE L1 -410 5756 5319 2407 96 0 0 chr4 714797 715110 -201613237 - AluSq SINE Alu 0 313 1 627 202 0 0 chr4 715115 715219 -201613128 - FRAM SINE Alu -14 162 59 1928 134 7 3 chr4 716583 716874 -201611473 - AluJb SINE Alu -18 294 3 2252 78 0 10 chr4 717926 718221 -201610126 - AluY SINE Alu -19 292 1 617 185 92 0 chr4 718488 718607 -201609740 - FLAM_C SINE Alu -1 132 3 617 285 97 0 chr4 718738 718966 -201609381 - L1MC/D LINE L1 -586 5773 5524 2338 77 3 0 chr4 719278 719577 -201608770 - AluSx SINE Alu -12 300 1 1280 20 0 0 chr4 719595 719742 -201608605 - SVA Other Other 0 1386 1240 395 216 78 0 chr4 719745 719861 -201608486 - L1MC/D LINE L1 -817 5329 5205 1140 335 64 34 chr4 720069 720243 -201608104 - L1MC/D LINE L1 -1278 4868 4701 2392 55 3 0 chr4 720243 720534 -201607813 + AluY SINE Alu 1 292 -19 1140 335 64 34 chr4 720534 721144 -201607203 - L1MC/D LINE L1 -1445 4701 4061 2015 113 48 3 chr4 721166 721458 -201606889 + AluSx SINE Alu 1 305 -7 789 175 0 58 chr4 721471 721625 -201606722 - FRAM SINE Alu -24 152 8 734 231 95 27 chr4 722133 722354 -201605993 - AluJo SINE Alu -76 236 1 1243 271 60 17 chr4 722446 722516 -201605831 - L1MC/D LINE L1 -2211 3935 3869 528 114 13 0 chr4 722516 722595 -201605752 + MADE1 DNA Mariner 1 80 0 1243 271 60 17 chr4 722595 723060 -201605287 - L1MC/D LINE L1 -2277 3869 3377 236 368 129 21 chr4 723240 723580 -201604767 - L1MC/D LINE L1 -3010 3136 2760 310 299 17 0 chr4 723668 723785 -201604562 - L1MC/D LINE L1 -3538 2608 2490 724 213 0 7 chr4 725573 725714 -201602633 + AluJo SINE Alu 86 225 -87 716 194 8 8 chr4 725707 725841 -201602506 + AluJo/FRAM SINE Alu 163 296 -16 * 367 304 56 43 chr4 725891 726052 -201602295 + L1ME1 LINE L1 5262 5424 -2384 3678 183 56 67 chr4 726310 726788 -201601559 + Tigger1 DNA MER2_type 20 502 -1916 1631 157 27 20 chr4 726788 727081 -201601266 + AluJb SINE Alu 1 295 -17 3678 183 56 67 chr4 727081 727589 -201600758 + Tigger1 DNA MER2_type 502 995 -1423 239 207 49 37 chr4 727589 727671 -201600676 + Tigger1 DNA MER2_type 913 995 -1423 252 207 49 37 chr4 727671 727753 -201600594 + Tigger1 DNA MER2_type 913 995 -1423 2221 65 7 0 chr4 727873 728151 -201600196 + AluY SINE Alu 16 295 -16 1265 147 8 37 chr4 728153 728398 -201599949 + Tigger1 DNA MER2_type 1173 1410 -1008 291 195 26 26 chr4 732138 732215 -201596132 - MER58 DNA MER1_type -2311 109 33 266 272 20 54 chr4 732761 732908 -201595439 + (CACG)n Simple_repeat Simple_repeat 2 143 0 * 477 234 0 65 chr4 732830 733014 -201595333 + (CA)n Simple_repeat Simple_repeat 1 172 0 213 218 0 52 chr4 733075 733276 -201595071 + (CA)n Simple_repeat Simple_repeat 1 190 0 268 232 0 56 chr4 733297 733592 -201594755 + (CA)n Simple_repeat Simple_repeat 1 278 0 474 265 0 49 chr4 733607 733792 -201594555 + (CA)n Simple_repeat Simple_repeat 2 177 0 241 201 13 40 chr4 733803 733952 -201594395 + (CA)n Simple_repeat Simple_repeat 2 146 0 349 241 73 0 chr4 736872 736970 -201591377 - AluJ/FLAM SINE Alu -217 85 1 509 270 128 0 chr4 736970 737174 -201591173 - L1M4 LINE L1 -3119 3027 2798 863 259 64 4 chr4 737725 737991 -201590356 + L1ME1 LINE L1 5566 5847 -319 341 299 51 51 chr4 737991 738176 -201590171 + L1MD2 LINE L1 5973 6135 -224 2088 96 24 10 chr4 738193 738484 -201589863 - AluSp SINE Alu -17 296 2 1667 176 3 37 chr4 739101 739424 -201588923 + AluSx SINE Alu 1 312 0 1712 148 35 0 chr4 739429 739713 -201588634 + AluJo SINE Alu 6 299 -13 4268 176 79 129 chr4 739741 741526 -201586821 - pTR5 LTR ERV1 0 2438 743 2070 113 10 0 chr4 742093 742371 -201585976 + AluSx SINE Alu 1 284 -28 297 0 0 0 chr4 742371 742404 -201585943 + (CA)n Simple_repeat Simple_repeat 2 34 0 2070 113 10 0 chr4 742404 742425 -201585922 + AluSx SINE Alu 284 303 -9 2334 82 3 3 chr4 743502 743808 -201584539 - AluSc SINE Alu -3 306 1 2150 117 0 13 chr4 743814 744130 -201584217 - AluSx SINE Alu 0 312 1 23 0 0 0 chr4 748306 748329 -201580018 + AT_rich Low_complexity Low_complexity 1 23 0 2312 84 0 0 chr4 749456 749752 -201578595 - AluY SINE Alu -15 296 1 442 236 138 11 chr4 750595 750769 -201577578 - L1MC1 LINE L1 -1 6332 6137 1698 223 61 17 chr4 750885 751410 -201576937 - L1MC1 LINE L1 -382 5951 5404 265 347 35 15 chr4 753528 753727 -201574620 + L1MEd LINE L1 1306 1508 -5022 370 310 85 3 chr4 753729 753879 -201574468 + L1MEd LINE L1 1533 1696 -4844 1826 104 4 4 chr4 754926 755194 -201573153 - AluSc SINE Alu -3 306 39 1439 126 0 0 chr4 755294 755501 -201572846 + AluSq SINE Alu 91 297 -16 231 264 58 11 chr4 755513 755600 -201572747 - L1MC1 LINE L1 -2204 3942 3852 327 299 125 69 chr4 756076 757063 -201571284 + L1M2 LINE L1 369 1250 -5599 2135 99 10 6 chr4 760121 760433 -201567914 + AluSq SINE Alu 1 313 0 1006 235 40 99 chr4 760433 760879 -201567468 - Cheshire DNA MER1_type -1584 836 417 264 200 146 0 chr4 761030 761140 -201567207 - Cheshire DNA MER1_type -2216 204 79 448 184 0 0 chr4 761144 761220 -201567127 - AluJ/FLAM SINE Alu -236 76 1 442 241 25 64 chr4 762303 762336 -201566011 + L1MC5 LINE L1 7552 7585 -376 1687 166 44 0 chr4 762336 762631 -201565716 + AluJb SINE Alu 1 308 -4 442 241 25 64 chr4 762631 762800 -201565547 + L1MC5 LINE L1 7585 7746 -215 2215 86 0 35 chr4 762946 763260 -201565087 - AluSg SINE Alu -7 303 1 361 273 81 68 chr4 763758 763919 -201564428 - L1M4 LINE L1 -1575 4571 4409 1527 108 5 0 chr4 763926 764140 -201564207 + AluSg SINE Alu 1 215 -95 296 169 70 14 chr4 764248 764319 -201564028 + L1MD3 LINE L1 7921 7995 0 306 325 6 12 chr4 767462 767625 -201560722 + (CA)n Simple_repeat Simple_repeat 1 162 0 21 0 0 0 chr4 768078 768099 -201560248 + GC_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 769307 769337 -201559010 + GC_rich Low_complexity Low_complexity 1 30 0 310 382 94 9 chr4 769443 769676 -201558671 + HAL1 LINE L1 1011 1263 -1244 259 261 125 45 chr4 772949 773125 -201555222 - MLT1C LTR MaLR -269 198 9 21 57 0 0 chr4 774390 774425 -201553922 + GC_rich Low_complexity Low_complexity 1 35 0 2000 112 0 31 chr4 776213 776534 -201551813 + AluY SINE Alu 1 311 0 1370 187 100 2 chr4 776545 776929 -201551418 - MER31A LTR ERV1 -21 445 1 2351 55 3 0 chr4 777437 777729 -201550618 - AluY SINE Alu -18 293 1 512 261 252 13 chr4 777853 778167 -201550180 - L2 LINE L2 -14 3299 2911 538 107 68 10 chr4 779789 779892 -201548455 - MER34B LTR ERV1 -155 410 302 551 224 176 0 chr4 779960 780019 -201548328 + L1MC3 LINE L1 6784 6831 -954 2080 119 3 3 chr4 780019 780321 -201548026 + AluSp SINE Alu 1 302 -11 551 224 176 0 chr4 780321 780471 -201547876 + L1MC3 LINE L1 6831 7030 -755 352 133 42 0 chr4 780471 780554 -201547793 + FRAM/FAM SINE Alu 21 84 -91 335 285 60 98 chr4 780666 780901 -201547446 - L1MEc LINE L1 -3810 2572 2347 235 291 0 13 chr4 781097 781176 -201547171 + (TG)n Simple_repeat Simple_repeat 1 78 0 451 305 110 54 chr4 781334 782037 -201546310 - L1MEc LINE L1 -4638 1895 999 1779 119 8 0 chr4 782675 782927 -201545420 + AluSx SINE Alu 40 293 -19 180 233 50 67 chr4 783161 783221 -201545126 + L2 LINE L2 3204 3262 -10 309 292 62 10 chr4 784843 784939 -201543408 - L1MCa LINE L1 -3102 3324 3224 211 200 0 0 chr4 784943 784978 -201543369 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1103 258 36 32 chr4 785010 785084 -201543263 - L1MCa LINE L1 -3212 3214 3142 1600 114 0 5 chr4 785084 785304 -201543043 + AluSg SINE Alu 1 219 -91 1103 258 36 32 chr4 785304 785698 -201542649 - L1MCa LINE L1 -3284 3142 2744 340 315 152 16 chr4 785912 786169 -201542178 + MLT1E LTR MaLR 301 592 -1 515 327 97 4 chr4 786182 786460 -201541887 - L1MCa LINE L1 -4002 2605 2302 402 304 57 53 chr4 786493 786756 -201541591 - L1MCa LINE L1 -4837 1591 1275 846 99 0 0 chr4 792269 792380 -201535967 + AluSp SINE Alu 1 111 -202 1592 130 53 37 chr4 792738 793037 -201535310 - AluJo SINE Alu -8 304 1 266 195 134 12 chr4 793164 793246 -201535101 + MER68 LTR ERV1 60 151 -411 502 265 0 32 chr4 793982 794167 -201534180 + (CA)n Simple_repeat Simple_repeat 1 179 0 * 510 318 11 19 chr4 794119 794547 -201533800 + (CACG)n Simple_repeat Simple_repeat 1 424 0 416 326 0 27 chr4 794528 794712 -201533635 + (CA)n Simple_repeat Simple_repeat 1 179 0 * 339 365 0 0 chr4 794789 794967 -201533380 + (CA)n Simple_repeat Simple_repeat 1 178 0 320 234 124 29 chr4 797032 797169 -201531178 + MER77 LTR ERV1 62 211 -394 418 293 55 0 chr4 797191 797372 -201530975 + MER77 LTR ERV1 407 597 -8 1982 112 3 39 chr4 797922 798234 -201530113 - AluSx SINE Alu -9 303 3 711 133 0 0 chr4 798236 798341 -201530006 - AluSg/x SINE Alu -8 301 197 2159 79 7 0 chr4 801676 801993 -201526354 + AluSg SINE Alu 1 319 0 1768 136 3 29 chr4 802955 803263 -201525084 + AluJo SINE Alu 1 300 -12 207 315 0 0 chr4 803286 803340 -201525007 + GA-rich Low_complexity Low_complexity 6 59 0 331 202 20 50 chr4 804550 804649 -201523698 + L1MC2 LINE L1 6240 6335 -9 1964 84 0 15 chr4 804654 804917 -201523430 + AluSc SINE Alu 15 273 -36 2313 75 0 3 chr4 805555 805850 -201522497 + AluSx SINE Alu 1 294 -18 256 262 0 16 chr4 807775 807836 -201520511 + GA-rich Low_complexity Low_complexity 3 62 0 2144 102 3 7 chr4 808932 809236 -201519111 + AluSx SINE Alu 1 303 -9 1537 167 30 13 chr4 809304 809603 -201518744 + AluJb SINE Alu 3 306 -6 329 313 123 20 chr4 809787 809982 -201518365 + L1ME1 LINE L1 5263 5477 -882 2491 147 159 16 chr4 811782 812328 -201516019 + MER51A LTR ERV1 2 625 -9 467 213 48 69 chr4 812412 812764 -201515583 + (CACGC)n Simple_repeat Simple_repeat 1 344 0 789 174 8 0 chr4 815362 815494 -201512853 + AluJo SINE Alu 3 135 -177 1399 181 72 22 chr4 815494 815771 -201512576 + AluJo SINE Alu 1 291 -21 1721 91 0 29 chr4 815883 816125 -201512222 - AluSq SINE Alu -78 235 1 212 296 0 34 chr4 821289 821465 -201506882 + (CA)n Simple_repeat Simple_repeat 1 170 0 429 309 85 15 chr4 822212 822489 -201505858 + L1ME1 LINE L1 3138 3779 -2367 1179 293 20 8 chr4 822586 822978 -201505369 + L1ME1 LINE L1 3944 4340 -1806 1728 240 88 11 chr4 822982 823182 -201505165 + L1ME1 LINE L1 5075 5258 -908 1528 141 148 0 chr4 823182 823438 -201504909 - AluJb SINE Alu -6 296 3 1728 240 88 11 chr4 823438 824051 -201504296 + L1ME1 LINE L1 5258 5943 -223 230 328 25 42 chr4 824399 824640 -201503707 + L1ME1 LINE L1 5841 6077 -89 26 0 0 0 chr4 824723 824749 -201503598 + AT_rich Low_complexity Low_complexity 1 26 0 1083 252 232 2 chr4 824811 825355 -201502992 + L1MD1 LINE L1 3527 4195 -1951 450 186 0 21 chr4 825361 825458 -201502889 + L1MA8 LINE L1 6026 6120 -171 483 221 31 0 chr4 825463 825590 -201502757 + L1MA8 LINE L1 6157 6287 -4 570 315 89 33 chr4 826311 826780 -201501567 + L2 LINE L2 2776 3279 -34 909 144 14 14 chr4 826800 826946 -201501401 + FRAM SINE Alu 13 158 -18 2193 87 10 16 chr4 826952 827261 -201501086 + AluY SINE Alu 5 311 0 2397 66 0 3 chr4 827494 827796 -201500551 - AluSc SINE Alu -8 301 1 793 217 120 77 chr4 827920 828049 -201500298 + L1MD1 LINE L1 4725 4847 -1395 2187 100 30 0 chr4 828049 828348 -201499999 - AluSx SINE Alu -4 308 1 793 217 120 77 chr4 828348 828990 -201499357 + L1MD1 LINE L1 4847 5520 -722 921 221 142 40 chr4 828993 829187 -201499160 + MLT1B LTR MaLR 1 174 -216 2245 103 0 0 chr4 829187 829489 -201498858 + AluSx SINE Alu 1 302 -10 921 221 142 40 chr4 829489 829647 -201498700 + MLT1B LTR MaLR 174 389 -1 1207 210 73 6 chr4 829648 829962 -201498385 + L1MD1 LINE L1 5527 5861 -381 416 263 226 29 chr4 829963 830237 -201498110 + L1MD1 LINE L1 5915 6242 0 1875 141 0 21 chr4 830341 830631 -201497716 + AluJo SINE Alu 1 284 -28 22 0 0 0 chr4 830776 830798 -201497549 + AT_rich Low_complexity Low_complexity 1 22 0 1192 217 25 39 chr4 830833 830857 -201497490 + L1ME LINE L1 5369 5392 -772 2019 108 30 3 chr4 830857 831152 -201497195 + AluSx SINE Alu 1 303 -9 1192 217 25 39 chr4 831152 831487 -201496860 + L1ME LINE L1 5392 5723 -441 607 185 15 11 chr4 831551 831687 -201496660 + MSTA LTR MaLR 3 141 -234 229 245 0 0 chr4 831854 831907 -201496440 + MSTA LTR MaLR 129 181 -247 456 219 0 0 chr4 831944 832040 -201496307 + AluSg/x SINE Alu 209 304 -6 1338 158 113 34 chr4 832516 832844 -201495503 + MLT1A1 LTR MaLR 12 365 0 483 352 82 9 chr4 833336 833569 -201494778 + MIR SINE MIR 4 253 -9 221 212 0 30 chr4 833770 833836 -201494511 + (CCGCT)n Simple_repeat Simple_repeat 4 67 0 2203 104 3 0 chr4 834098 834387 -201493960 - AluSx SINE Alu -22 290 1 779 191 19 13 chr4 834413 834570 -201493777 + FRAM SINE Alu 1 158 -18 2280 97 7 0 chr4 834782 835091 -201493256 - AluSp SINE Alu -2 311 1 600 195 55 16 chr4 835602 835730 -201492617 + FLAM_A SINE Alu 1 133 0 770 206 41 85 chr4 835805 836121 -201492226 + MER46C DNA MER2_type 20 321 -17 427 284 147 47 chr4 839218 839248 -201489099 + MER102b DNA MER1_type 86 112 -1316 1895 59 134 0 chr4 839248 839525 -201488822 + AluSq SINE Alu 2 312 0 427 284 147 47 chr4 839525 839723 -201488624 + MER102b DNA MER1_type 112 340 -1 257 114 286 0 chr4 839834 839904 -201488443 + LTR54 LTR ERV1 391 480 -30 801 339 120 48 chr4 840146 841082 -201487265 - L2 LINE L2 -1010 2304 1302 1677 201 143 55 chr4 841378 842089 -201486258 + L1MC2 LINE L1 2320 3086 -3060 1340 123 0 47 chr4 842109 842320 -201486027 + AluSx SINE Alu 35 235 -77 3631 201 91 136 chr4 842342 842696 -201485651 + L1MC2 LINE L1 3073 3441 -2705 2136 107 0 10 chr4 842696 842995 -201485352 + AluSc SINE Alu 1 296 -13 3631 201 91 136 chr4 842995 843085 -201485262 + L1MC2 LINE L1 3441 3534 -2612 835 79 44 0 chr4 843085 843199 -201485148 + L1MA2 LINE L1 6186 6304 0 3631 201 91 136 chr4 843199 843304 -201485043 + L1MC2 LINE L1 3534 3642 -2504 2085 132 3 0 chr4 843304 843599 -201484748 + AluSq SINE Alu 1 296 -17 3631 201 91 136 chr4 843599 844244 -201484103 + L1MC2 LINE L1 3642 4315 -1831 2271 106 0 0 chr4 844244 844545 -201483802 + AluSx SINE Alu 1 301 -11 3631 201 91 136 chr4 844545 845038 -201483309 + L1MC2 LINE L1 4315 4765 -1381 561 204 0 0 chr4 845038 845136 -201483211 + FLAM_A SINE Alu 1 98 -44 3631 201 91 136 chr4 845136 845319 -201483028 + L1MC2 LINE L1 4765 4955 -1191 1137 67 0 0 chr4 845321 845456 -201482891 + AluSp SINE Alu 1 135 -178 2290 106 0 0 chr4 845456 845757 -201482590 + AluSx SINE Alu 1 301 -11 501 235 137 0 chr4 845762 845945 -201482402 + L1MC2 LINE L1 4958 5165 -981 2160 176 46 18 chr4 845977 846189 -201482158 + L1MC2 LINE L1 5753 5958 -386 2263 96 3 0 chr4 846189 846491 -201481856 + AluSq SINE Alu 1 303 -10 2160 176 46 18 chr4 846491 846748 -201481599 + L1MC2 LINE L1 5958 6240 -104 2267 89 0 0 chr4 846748 847072 -201481275 + AluSg SINE Alu 1 324 0 2160 176 46 18 chr4 847072 847100 -201481247 + L1MC2 LINE L1 6240 6266 -78 2210 101 7 3 chr4 847118 847415 -201480932 + AluSq SINE Alu 1 298 -15 441 204 0 0 chr4 849882 850019 -201478328 + (TG)n Simple_repeat Simple_repeat 1 137 0 219 177 0 0 chr4 850047 850109 -201478238 + (TG)n Simple_repeat Simple_repeat 2 63 0 243 0 0 0 chr4 850971 850998 -201477349 + (TG)n Simple_repeat Simple_repeat 1 27 0 252 200 0 0 chr4 851040 851100 -201477247 + (CA)n Simple_repeat Simple_repeat 1 60 0 305 360 81 37 chr4 851525 851897 -201476450 + L1MDa LINE L1 1271 1610 -1291 34 42 0 0 chr4 851901 851949 -201476398 + GC_rich Low_complexity Low_complexity 1 48 0 201 121 0 0 chr4 852327 852360 -201475987 + (CTG)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr4 852368 852389 -201475958 + GC_rich Low_complexity Low_complexity 1 21 0 195 235 0 0 chr4 854590 854641 -201473706 + G-rich Low_complexity Low_complexity 2 52 0 241 324 20 10 chr4 854954 855056 -201473291 + (CGTG)n Simple_repeat Simple_repeat 1 103 0 228 335 0 58 chr4 855009 855197 -201473150 + (TG)n Simple_repeat Simple_repeat 2 178 0 * 211 366 0 17 chr4 855319 855491 -201472856 + (TG)n Simple_repeat Simple_repeat 1 169 0 183 42 0 0 chr4 855542 855566 -201472781 + (TG)n Simple_repeat Simple_repeat 2 25 0 264 120 0 0 chr4 855759 855809 -201472538 + (TG)n Simple_repeat Simple_repeat 2 51 0 2125 77 42 0 chr4 857929 858214 -201470133 - AluSx SINE Alu -13 299 3 256 178 27 0 chr4 859721 859794 -201468553 + (TG)n Simple_repeat Simple_repeat 2 76 0 253 83 0 0 chr4 864152 864200 -201464147 - L1PA2 LINE L1 0 6155 6108 200 187 0 13 chr4 865258 865333 -201463014 + (CGGG)n Simple_repeat Simple_repeat 3 76 0 22 35 0 0 chr4 869353 869382 -201458965 + GC_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 869490 869513 -201458834 + GC_rich Low_complexity Low_complexity 1 23 0 297 0 0 0 chr4 871203 871236 -201457111 + (TCTCCC)n Simple_repeat Simple_repeat 5 37 0 6715 48 2 154 chr4 871242 872420 -201455927 + SVA Other Other 50 1047 -339 471 266 21 7 chr4 872562 872705 -201455642 - MLT1A2 LTR MaLR 0 374 230 1096 228 87 3 chr4 872749 873095 -201455252 + MLT1C LTR MaLR 3 377 -90 296 373 32 0 chr4 873085 873211 -201455136 + MER82 DNA MER2_type 516 645 -8 * 928 81 0 0 chr4 873573 873696 -201454651 - AluSp/q SINE Alu -16 297 175 217 230 13 0 chr4 873808 873960 -201454387 + (CA)n Simple_repeat Simple_repeat 2 155 0 202 217 0 17 chr4 873973 874033 -201454314 + (CCCA)n Simple_repeat Simple_repeat 3 61 0 316 195 20 23 chr4 874035 874294 -201454053 + (CA)n Simple_repeat Simple_repeat 1 258 0 364 266 12 0 chr4 874313 874482 -201453865 + (CA)n Simple_repeat Simple_repeat 2 172 0 236 284 15 0 chr4 878187 878254 -201450093 + MIR SINE MIR 82 149 -59 2266 87 3 3 chr4 879120 879420 -201448927 + AluSg SINE Alu 1 300 -10 252 255 0 32 chr4 880458 880552 -201447795 + C-rich Low_complexity Low_complexity 1 91 0 183 333 0 0 chr4 882018 882063 -201446284 + L2 LINE L2 3225 3269 -3 2050 125 0 7 chr4 888276 888579 -201439768 - AluJb SINE Alu -11 301 1 1718 234 96 71 chr4 888943 889097 -201439250 - L1ME1 LINE L1 -75 6091 5942 2040 114 7 0 chr4 889097 889387 -201438960 - AluSx SINE Alu -20 292 1 1718 234 96 71 chr4 889387 889846 -201438501 - L1ME1 LINE L1 -224 5942 5449 2202 114 0 0 chr4 889846 890152 -201438195 + AluSx SINE Alu 1 306 -6 1718 234 96 71 chr4 890152 890458 -201437889 - L1ME1 LINE L1 -717 5449 5152 2304 110 0 0 chr4 890458 890766 -201437581 + AluSx SINE Alu 1 308 -4 1454 193 72 34 chr4 890769 891033 -201437314 + L1ME LINE L1 4664 4951 -1195 2225 93 0 26 chr4 891033 891343 -201437004 + AluSc SINE Alu 1 302 -7 1454 193 72 34 chr4 891343 891492 -201436855 + L1ME LINE L1 4951 5093 -1053 615 137 154 17 chr4 891493 891610 -201436737 - FLAM_C SINE Alu 0 133 1 2009 119 11 0 chr4 891662 891948 -201436399 + AluSx SINE Alu 1 289 -23 524 299 60 9 chr4 893311 893528 -201434819 + L1ME LINE L1 5359 5586 -578 536 15 0 0 chr4 893528 893593 -201434754 - AluY SINE Alu -10 300 236 22 35 0 0 chr4 893877 893906 -201434441 + GC_rich Low_complexity Low_complexity 1 29 0 403 306 177 23 chr4 896340 896640 -201431707 - L2 LINE L2 -254 3059 2806 2093 67 0 4 chr4 896640 896908 -201431439 - AluY SINE Alu -3 308 42 403 306 177 23 chr4 896908 897144 -201431203 - L2 LINE L2 -507 2806 2421 261 266 6 51 chr4 898425 898583 -201429764 + G-rich Low_complexity Low_complexity 5 155 0 633 175 79 16 chr4 900497 900524 -201427823 - AluJo/FRAM SINE Alu -14 298 274 2365 74 3 0 chr4 900524 900821 -201427526 + AluSg SINE Alu 1 298 -12 633 175 79 16 chr4 900821 900919 -201427428 - AluJo/FRAM SINE Alu -38 274 165 948 178 12 0 chr4 900931 901100 -201427247 - AluJo SINE Alu -21 291 121 2053 102 3 22 chr4 901129 901443 -201426904 + AluSc SINE Alu 1 308 -1 582 279 177 42 chr4 901444 901480 -201426867 - MER69 DNA AcHobo -64 2462 2432 2049 116 3 7 chr4 901480 901781 -201426566 + AluSx SINE Alu 1 300 -12 2350 84 0 3 chr4 901781 902092 -201426255 + AluSg SINE Alu 1 310 0 582 279 177 42 chr4 902092 902642 -201425705 - MER69 DNA AcHobo -93 2433 1796 357 227 84 17 chr4 903073 903192 -201425155 - MER74B LTR ERVL 0 622 496 259 194 65 0 chr4 903417 903479 -201424868 - MER74B LTR ERVL -483 139 74 2397 76 0 0 chr4 903479 903780 -201424567 + AluSq SINE Alu 1 301 -12 340 169 26 13 chr4 903935 904012 -201424335 + MER107 DNA MER1_type 71 148 -49 439 336 38 15 chr4 904083 904348 -201423999 + HERVL74 LTR ERVL 1671 1941 -3744 383 123 0 0 chr4 904425 904490 -201423857 + HERVL74 LTR ERVL 2096 2160 -3525 1511 164 17 40 chr4 904505 904647 -201423700 + AluJb SINE Alu 1 145 -167 180 0 0 0 chr4 904647 904667 -201423680 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 1511 164 17 40 chr4 904667 904822 -201423525 + AluJb SINE Alu 145 291 -21 2410 218 60 35 chr4 904825 904992 -201423355 + HERVL74 LTR ERVL 2241 2402 -3283 2332 73 0 13 chr4 904992 905294 -201423053 - AluY SINE Alu -13 298 1 2410 218 60 35 chr4 905294 905930 -201422417 + HERVL74 LTR ERVL 2402 3064 -2621 362 291 52 23 chr4 906015 906187 -201422160 - MLT1D LTR MaLR -264 241 65 1576 216 138 12 chr4 906383 906922 -201421425 + MER39B LTR ERV1 1 649 -4 2305 100 0 0 chr4 907000 907299 -201421048 - AluSx SINE Alu -13 299 1 225 228 0 13 chr4 907332 907411 -201420936 - L1MB8 LINE L1 -4 6174 6097 534 250 83 74 chr4 907433 907729 -201420618 - L1MD3 LINE L1 0 8042 7770 1851 119 93 0 chr4 907729 908007 -201420340 + AluSx SINE Alu 7 310 -2 534 250 83 74 chr4 908007 908135 -201420212 - L1MD3 LINE L1 -272 7770 7645 333 314 32 16 chr4 908664 908788 -201419559 - L1ME LINE L1 -5932 138 13 1440 224 13 19 chr4 909088 909396 -201418951 - AluJo SINE Alu -6 306 1 1150 142 29 0 chr4 909470 909674 -201418673 + MER2 DNA MER2_type 1 210 -135 242 172 52 0 chr4 909713 909771 -201418576 + MER2 DNA MER2_type 280 340 -5 821 183 0 0 chr4 909819 909961 -201418386 + AluSg/x SINE Alu 171 312 0 381 329 17 69 chr4 913105 913187 -201415160 + L1ME1 LINE L1 5776 5861 -305 1636 170 47 55 chr4 913187 913551 -201414796 - THE1B LTR MaLR 0 364 4 381 329 17 69 chr4 913551 913699 -201414648 + L1ME1 LINE L1 5861 5994 -172 1433 140 131 44 chr4 914934 915235 -201413112 + THE1C LTR MaLR 1 274 -101 2260 70 3 26 chr4 915235 915537 -201412810 - AluY SINE Alu -16 295 1 243 0 0 0 chr4 915537 915564 -201412783 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1967 105 3 47 chr4 915564 915860 -201412487 - AluSg SINE Alu -27 283 1 1433 140 131 44 chr4 915860 915899 -201412448 + THE1C LTR MaLR 273 373 -2 324 237 144 17 chr4 916199 916250 -201412097 + L1MEc LINE L1 55 98 -6298 2081 124 0 3 chr4 916250 916548 -201411799 - AluSx SINE Alu -15 297 1 324 237 144 17 chr4 916548 916614 -201411733 + L1MEc LINE L1 98 187 -6209 3228 260 81 76 chr4 916854 916974 -201411373 + L1MEc LINE L1 1732 1850 -4365 1703 152 27 14 chr4 916974 917271 -201411076 + AluJo SINE Alu 12 312 0 3228 260 81 76 chr4 917271 917868 -201410479 + L1MEc LINE L1 1850 2443 -3772 2472 71 0 0 chr4 917868 918178 -201410169 + AluY SINE Alu 1 310 -1 3228 260 81 76 chr4 918178 919692 -201408655 + L1MEc LINE L1 2443 3949 -2266 1694 190 88 41 chr4 919692 920103 -201408244 + MSTB1 LTR MaLR 2 431 -1 2087 116 3 3 chr4 920111 920405 -201407942 + AluSq SINE Alu 1 294 -19 3228 260 81 76 chr4 920405 920991 -201407356 + L1MEc LINE L1 3955 4569 -1646 2120 99 7 0 chr4 920991 921283 -201407064 - AluSx SINE Alu -18 294 1 3228 260 81 76 chr4 921283 921765 -201406582 + L1MEc LINE L1 4569 5047 -1168 779 306 65 44 chr4 923018 923502 -201404845 - L1MB7 LINE L1 -9 6165 5676 260 267 13 20 chr4 925991 926141 -201402206 + CT-rich Low_complexity Low_complexity 2 150 0 318 366 57 60 chr4 931187 931452 -201396895 + HAL1 LINE L1 1013 1276 -1231 736 153 0 0 chr4 937303 937414 -201390933 + FLAM_C SINE Alu 1 111 -32 1350 118 24 0 chr4 937420 937631 -201390716 - AluY SINE Alu -12 299 84 278 125 0 0 chr4 937632 937672 -201390675 - AluY SINE Alu -52 249 210 28 29 0 0 chr4 938869 938904 -201389443 + AT_rich Low_complexity Low_complexity 1 35 0 2274 56 3 11 chr4 940224 940510 -201387837 - AluY SINE Alu -27 284 1 2222 105 0 0 chr4 940510 940804 -201387543 - AluSg SINE Alu -16 294 1 819 234 148 10 chr4 940807 940993 -201387354 - L1MEc LINE L1 -4347 2049 1890 1787 117 0 0 chr4 940993 941240 -201387107 + AluSx SINE Alu 48 294 -18 819 234 148 10 chr4 941240 941343 -201387004 - L1MEc LINE L1 -4506 1890 1720 621 269 72 46 chr4 941396 941566 -201386781 - L1MEc LINE L1 -5107 1289 1125 2192 104 0 0 chr4 941566 941855 -201386492 - AluSx SINE Alu -23 289 1 621 269 72 46 chr4 941855 942074 -201386273 - L1MEc LINE L1 -5271 1125 890 1503 268 84 37 chr4 942211 942305 -201386042 - L1MEc LINE L1 -5424 972 884 1572 131 0 4 chr4 942305 942534 -201385813 - AluSq SINE Alu -85 228 1 1503 268 84 37 chr4 942534 942744 -201385603 - L1MEc LINE L1 -5512 884 685 1641 181 7 0 chr4 942744 943032 -201385315 - AluJb SINE Alu -22 290 1 1503 268 84 37 chr4 943032 943428 -201384919 - L1MEc LINE L1 -5711 685 238 318 302 52 0 chr4 945971 946087 -201382260 + MLT1A1 LTR MaLR 19 140 -225 262 288 55 0 chr4 946919 947082 -201381265 + (GTGTG)n Simple_repeat Simple_repeat 5 176 0 396 0 0 0 chr4 948568 948612 -201379735 + (TG)n Simple_repeat Simple_repeat 1 44 0 261 0 0 0 chr4 948657 948686 -201379661 + (TG)n Simple_repeat Simple_repeat 2 30 0 279 0 0 0 chr4 948722 948753 -201379594 + (TG)n Simple_repeat Simple_repeat 2 32 0 186 43 0 0 chr4 948791 948814 -201379533 + (TG)n Simple_repeat Simple_repeat 2 24 0 260 89 0 22 chr4 948848 948893 -201379454 + (TG)n Simple_repeat Simple_repeat 1 44 0 1832 173 7 0 chr4 949767 950068 -201378279 - AluJb SINE Alu -4 308 6 2198 105 20 0 chr4 950072 950376 -201377971 - AluSg SINE Alu 0 310 1 997 227 95 36 chr4 950669 951061 -201377286 - L1M3 LINE L1 -465 5715 5285 477 193 0 11 chr4 951084 951172 -201377175 - AluSg/x SINE Alu -26 284 198 433 211 13 0 chr4 951171 951247 -201377100 - AluJo SINE Alu -151 161 85 * 890 73 0 0 chr4 951348 951458 -201376889 - AluSq/x SINE Alu -203 110 1 200 328 160 0 chr4 958276 958395 -201369952 + MIR SINE MIR 68 205 -57 206 322 0 0 chr4 961632 961722 -201366625 + C-rich Low_complexity Low_complexity 1 90 0 2411 50 3 10 chr4 963060 963358 -201364989 - AluY SINE Alu -15 296 1 229 282 91 9 chr4 963962 964072 -201364275 - L1MD1 LINE L1 -1 6241 6123 1870 152 50 19 chr4 968156 968519 -201359828 - THE1C LTR MaLR -1 374 1 1485 112 0 5 chr4 969344 969550 -201358797 - AluSg/x SINE Alu -21 291 87 361 83 0 0 chr4 971056 971104 -201357243 + THE1C LTR MaLR 1 48 -327 2376 111 42 11 chr4 971126 971479 -201356868 + THE1B LTR MaLR 1 364 0 273 358 57 0 chr4 972076 972199 -201356148 + Tigger8 DNA MER2_type 170 299 -367 258 181 96 12 chr4 972292 972375 -201355972 + Tigger8 DNA MER2_type 434 523 -143 786 239 84 47 chr4 976854 977067 -201351280 + MER58A DNA MER1_type 1 221 -3 2143 88 14 3 chr4 977179 977476 -201350871 + AluSp SINE Alu 1 300 -13 543 222 50 14 chr4 978775 978931 -201349416 + MER74A LTR ERVL 23 239 -383 263 258 82 21 chr4 979024 979121 -201349226 + MER74B LTR ERVL 512 614 -8 2307 77 10 16 chr4 979209 979521 -201348826 + AluSp SINE Alu 1 310 -3 301 261 91 0 chr4 980382 980470 -201347877 + L1M4 LINE L1 69 164 -6695 341 197 13 0 chr4 980540 980616 -201347731 + L1P LINE L1 3714 3790 -2356 466 285 100 43 chr4 981046 981499 -201346848 + L1M4 LINE L1 1282 1728 -5219 * 3734 215 23 85 chr4 981484 982730 -201345617 + L1M4 LINE L1 4410 5578 -1379 421 205 49 8 chr4 982700 982822 -201345525 + L1MC1 LINE L1 2003 2129 -4830 * 2104 95 54 0 chr4 982825 983121 -201345226 + AluSx SINE Alu 1 312 0 1011 150 24 0 chr4 983121 983288 -201345059 + AluJb SINE Alu 134 304 -8 324 249 89 35 chr4 983300 983469 -201344878 + L1MC1 LINE L1 2273 2450 -4688 413 295 59 56 chr4 983472 983811 -201344536 + L1MC1 LINE L1 2528 2867 -4271 862 164 96 82 chr4 983811 984030 -201344317 - MLT1A2 LTR MaLR 0 374 153 3012 199 38 9 chr4 984049 984706 -201343641 - L1MB3 LINE L1 -30 6153 5478 1389 150 86 29 chr4 984868 985148 -201343199 - AluJb SINE Alu -16 296 1 820 133 55 0 chr4 985148 985276 -201343071 - AluSq/x SINE Alu -178 135 1 863 157 21 0 chr4 985278 985418 -201342929 - FRAM SINE Alu -17 159 17 1731 188 65 82 chr4 985431 985486 -201342861 - L1MB3 LINE L1 -697 5474 5420 771 197 0 0 chr4 985486 985618 -201342729 - FLAM_A SINE Alu -1 132 1 1731 188 65 82 chr4 985618 985730 -201342617 - L1MB3 LINE L1 -751 5420 5308 1704 173 3 10 chr4 985730 986025 -201342322 - AluJb SINE Alu -17 295 3 1731 188 65 82 chr4 986025 986472 -201341875 - L1MB3 LINE L1 -863 5308 4873 553 163 206 0 chr4 986490 986631 -201341716 - MLT1A2 LTR MaLR -220 170 1 671 242 55 19 chr4 986643 986933 -201341414 + L1MC1 LINE L1 2835 3133 -3824 * 1147 246 55 25 chr4 986924 986979 -201341368 + L1MC1 LINE L1 5162 5214 -1743 2026 124 3 13 chr4 986979 987286 -201341061 + AluSx SINE Alu 1 304 -8 1147 246 55 25 chr4 987286 987664 -201340683 + L1MC1 LINE L1 5214 5608 -1349 300 340 123 0 chr4 987682 987844 -201340503 - L1MEc LINE L1 -4016 2201 2020 757 292 79 17 chr4 987878 988231 -201340116 - L1MEc LINE L1 -4432 1964 1590 651 270 77 123 chr4 988254 988322 -201340025 + L1MC4 LINE L1 6885 6955 -853 1976 143 0 10 chr4 988322 988622 -201339725 + AluSx SINE Alu 1 297 -15 651 270 77 123 chr4 988622 989334 -201339013 + L1MC4 LINE L1 6955 7629 -179 457 254 71 56 chr4 990140 990337 -201338010 + L1MC4 LINE L1 7841 8040 -2 30 27 0 0 chr4 990409 990446 -201337901 + AT_rich Low_complexity Low_complexity 1 37 0 27 49 0 0 chr4 990485 990526 -201337821 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr4 990565 990586 -201337761 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr4 990633 990665 -201337682 + AT_rich Low_complexity Low_complexity 1 32 0 5873 143 45 22 chr4 990803 991980 -201336367 + L1MC1 LINE L1 5963 7144 0 195 346 28 60 chr4 993171 993353 -201334994 + L2 LINE L2 3133 3308 -5 191 267 67 0 chr4 994349 994424 -201333923 + L2 LINE L2 1705 1784 -1530 455 214 23 110 chr4 994600 994664 -201333683 + LTR37A LTR ERV1 260 328 -98 1961 178 103 0 chr4 994664 995052 -201333295 - MSTA LTR MaLR 0 428 1 455 214 23 110 chr4 995052 995079 -201333268 + LTR37A LTR ERV1 328 356 -70 1500 162 58 7 chr4 995079 995357 -201332990 - AluJo SINE Alu -20 292 1 455 214 23 110 chr4 995357 995437 -201332910 + LTR37A LTR ERV1 356 417 -9 888 193 119 30 chr4 996160 996362 -201331985 + MER58A DNA MER1_type 1 220 -4 1986 101 0 7 chr4 996365 996668 -201331679 + AluSg SINE Alu 23 310 0 920 123 0 0 chr4 996785 996915 -201331432 - FLAM_C SINE Alu 0 143 14 222 309 73 0 chr4 997479 997547 -201330800 + MIR SINE MIR 156 228 -34 417 281 10 0 chr4 999603 999699 -201328648 - MLT1K LTR MaLR -264 324 228 2528 196 38 108 chr4 999700 1000553 -201327794 - MER54B LTR ERVL 0 793 1 417 162 40 0 chr4 1000554 1000628 -201327719 - MLT1K LTR MaLR -358 230 154 759 235 0 47 chr4 1001365 1001535 -201326812 + FRAM SINE Alu 1 162 -4 208 139 0 28 chr4 1001538 1001574 -201326773 + (GGAAA)n Simple_repeat Simple_repeat 1 35 0 294 373 83 0 chr4 1002007 1002200 -201326147 + L2 LINE L2 3094 3302 -11 2111 86 18 0 chr4 1002756 1003071 -201325276 + AluSx SINE Alu 1 320 0 316 326 31 23 chr4 1003208 1003337 -201325010 + L1MEc LINE L1 1277 1406 -4990 2190 105 3 10 chr4 1003341 1003646 -201324701 - AluSp SINE Alu -10 303 1 350 228 13 0 chr4 1003696 1003775 -201324572 - MER58 DNA MER1_type -1 2419 2340 1915 142 13 3 chr4 1003843 1004146 -201324201 + AluJb SINE Alu 1 306 -6 441 225 6 66 chr4 1006000 1006243 -201322104 + G-rich Low_complexity Low_complexity 1 228 0 288 0 0 0 chr4 1006268 1006300 -201322047 + (TAA)n Simple_repeat Simple_repeat 3 34 0 621 105 175 18 chr4 1006346 1006460 -201321887 + FLAM_C SINE Alu 1 132 -1 342 265 11 54 chr4 1006579 1006764 -201321583 + G-rich Low_complexity Low_complexity 4 180 0 1908 124 90 37 chr4 1006923 1007277 -201321070 + THE1C LTR MaLR 1 373 -2 9807 132 24 40 chr4 1007281 1008885 -201319462 + THE1C-int LTR MaLR 3 1580 0 1906 131 81 36 chr4 1008885 1009244 -201319103 + THE1C LTR MaLR 1 375 0 201 304 25 13 chr4 1009248 1009327 -201319020 + (CGGGA)n Simple_repeat Simple_repeat 4 83 0 * 263 286 40 34 chr4 1009274 1009449 -201318898 + (GGATG)n Simple_repeat Simple_repeat 4 179 0 963 161 11 5 chr4 1012456 1012642 -201315705 - Charlie1 DNA MER1_type -4 2757 2571 393 235 49 49 chr4 1014138 1014321 -201314026 + L1ME3A LINE L1 5096 5278 -868 2204 71 0 4 chr4 1016592 1016859 -201311488 + AluY SINE Alu 1 266 -45 2238 100 0 17 chr4 1017067 1017368 -201310979 + AluSx SINE Alu 17 312 0 216 345 56 39 chr4 1017870 1018102 -201310245 + MIR SINE MIR 8 243 -19 471 350 90 8 chr4 1018429 1018695 -201309652 + L1MEc LINE L1 1529 1816 -4580 2084 133 7 3 chr4 1019667 1019968 -201308379 - AluSx SINE Alu -10 302 1 1078 267 39 27 chr4 1020353 1020497 -201307850 + L1MEc LINE L1 2685 2826 -3389 2947 92 54 7 chr4 1020497 1020921 -201307426 + MLT2A1 LTR ERVL 1 444 0 1078 267 39 27 chr4 1020921 1021188 -201307159 + L1MEc LINE L1 2826 3101 -3114 421 67 0 0 chr4 1021196 1021256 -201307091 + L1P3 LINE L1 5723 5782 -372 1156 37 0 15 chr4 1021260 1021394 -201306953 + AluYb8 SINE Alu 1 132 -186 1352 316 38 15 chr4 1021458 1022270 -201306077 + L1MEc LINE L1 3365 4195 -2020 1060 142 111 0 chr4 1022589 1022779 -201305568 - AluJb SINE Alu -22 290 80 1121 105 26 0 chr4 1022855 1023008 -201305339 - AluSg/x SINE Alu -19 291 135 506 209 147 0 chr4 1023009 1023186 -201305161 - Charlie5 DNA MER1_type -60 2552 2350 205 297 120 47 chr4 1024280 1024472 -201303875 + L2 LINE L2 2155 2360 -954 807 252 13 4 chr4 1024753 1024983 -201303364 + L1ME3A LINE L1 5624 5855 -315 1145 223 21 7 chr4 1024989 1025272 -201303075 + AluSx SINE Alu 26 312 0 371 277 8 54 chr4 1025756 1025993 -201302354 + C-rich Low_complexity Low_complexity 1 226 0 216 344 0 27 chr4 1026009 1026192 -201302155 + C-rich Low_complexity Low_complexity 1 178 0 185 0 0 39 chr4 1026228 1026254 -201302093 + (CCCCCT)n Simple_repeat Simple_repeat 1 25 0 346 190 235 23 chr4 1029732 1029910 -201298437 - MLT1J1 LTR MaLR -249 201 3 211 283 43 22 chr4 1030700 1030792 -201297555 - L2 LINE L2 -120 3193 3100 223 296 92 7 chr4 1031086 1031228 -201297119 - L2 LINE L2 -285 3028 2875 369 0 0 0 chr4 1031528 1031569 -201296778 + (CA)n Simple_repeat Simple_repeat 2 42 0 539 321 117 20 chr4 1031589 1031962 -201296385 + L1ME LINE L1 2676 3088 -3058 324 324 36 21 chr4 1032068 1032275 -201296072 + L1ME LINE L1 5564 5773 -348 2301 95 0 7 chr4 1032335 1032629 -201295718 - AluSc SINE Alu -17 292 1 2320 72 21 3 chr4 1032737 1033027 -201295320 - AluY SINE Alu -15 296 2 23 0 0 0 chr4 1033963 1033986 -201294361 + AT_rich Low_complexity Low_complexity 1 23 0 1824 154 3 14 chr4 1033986 1034279 -201294068 - AluJo SINE Alu -22 290 1 2218 128 0 0 chr4 1034289 1034586 -201293761 - AluSx SINE Alu -15 297 1 843 275 36 14 chr4 1035685 1035961 -201292386 - L3b LINE CR1 -200 1383 1102 367 246 95 8 chr4 1036322 1036448 -201291899 + L1ME LINE L1 5344 5480 -641 2684 146 116 30 chr4 1036481 1037287 -201291060 + L1MCa LINE L1 1203 2207 -4219 2070 106 34 20 chr4 1037287 1037579 -201290768 + AluSx SINE Alu 1 296 -16 2684 146 116 30 chr4 1037579 1037838 -201290509 + L1MCa LINE L1 2207 2442 -3984 6690 209 75 114 chr4 1037974 1038817 -201289530 + L1MCa LINE L1 2428 3303 -3123 986 210 46 1 chr4 1038817 1039118 -201289229 - MER2 DNA MER2_type 0 345 1 6690 209 75 114 chr4 1039118 1040763 -201287584 + L1MCa LINE L1 3303 5106 -1320 319 343 73 7 chr4 1041407 1041544 -201286803 - MIR SINE MIR -97 165 20 238 220 0 0 chr4 1041871 1041921 -201286426 + L2 LINE L2 3183 3232 -81 350 229 58 122 chr4 1042300 1042505 -201285842 + MIR SINE MIR 1 192 -70 203 351 22 30 chr4 1042583 1042717 -201285630 + L2 LINE L2 2622 2754 -560 297 280 13 70 chr4 1042821 1042978 -201285369 - MIR SINE MIR 0 262 115 * 564 209 104 86 chr4 1042973 1043092 -201285255 + MIR SINE MIR 35 161 -101 2157 128 3 0 chr4 1043092 1043388 -201284959 + AluSx SINE Alu 1 297 -15 564 209 104 86 chr4 1043388 1043488 -201284859 + MIR SINE MIR 161 258 -4 1373 191 93 31 chr4 1043531 1043855 -201284492 + MER2 DNA MER2_type 1 344 0 918 251 212 6 chr4 1043925 1044288 -201284059 - L2 LINE L2 -337 2977 2540 7541 29 13 0 chr4 1044299 1045369 -201282978 - L1PA4 LINE L1 0 6155 5082 343 269 185 0 chr4 1045376 1045484 -201282863 - MIR SINE MIR -108 154 27 750 293 98 32 chr4 1045842 1046160 -201282187 + L1MDa LINE L1 27 374 -6166 1651 167 25 117 chr4 1046160 1046632 -201281715 - MSTB1 LTR MaLR 0 432 4 750 293 98 32 chr4 1046632 1046682 -201281665 + L1MDa LINE L1 374 419 -6121 234 313 1 13 chr4 1046773 1046861 -201281486 + L1MDa LINE L1 778 865 -5665 2539 92 14 0 chr4 1046980 1047329 -201281018 + L1PB1 LINE L1 5794 6147 -4 1480 229 72 13 chr4 1047338 1047915 -201280432 + L1MDa LINE L1 2155 2650 -3890 1173 176 5 11 chr4 1047915 1048103 -201280244 + AluJo SINE Alu 1 187 -125 1000 253 68 3 chr4 1048211 1048547 -201279800 + L1MDa LINE L1 2761 3118 -3422 192 304 14 29 chr4 1048584 1048653 -201279694 + L2 LINE L2 1164 1231 -2083 200 289 19 58 chr4 1048679 1048783 -201279564 + L2 LINE L2 1298 1397 -1917 1137 230 157 3 chr4 1048805 1049148 -201279199 + MSTD LTR MaLR 1 396 0 280 242 0 102 chr4 1049357 1049485 -201278862 + L2 LINE L2 3198 3312 -1 425 331 64 0 chr4 1049870 1050027 -201278320 + MIR SINE MIR 73 239 -23 478 330 52 6 chr4 1050107 1050280 -201278067 - MIR SINE MIR -70 192 12 265 215 131 0 chr4 1050722 1050829 -201277518 - L1ME4a LINE L1 -171 5950 5830 409 254 224 15 chr4 1050965 1051166 -201277181 + MIR SINE MIR 9 251 -11 378 303 25 8 chr4 1051482 1051604 -201276743 - MER5B DNA MER1_type 0 178 55 1171 257 150 1 chr4 1051735 1052429 -201275918 - L1ME3A LINE L1 -48 6122 5318 982 156 11 5 chr4 1054593 1054779 -201273568 - Charlie1 DNA MER1_type -4 2757 2571 389 235 50 50 chr4 1056318 1056497 -201271850 + L1M4 LINE L1 5096 5274 -872 2192 75 0 4 chr4 1057474 1057741 -201270606 + AluY SINE Alu 1 266 -45 2238 102 0 16 chr4 1057947 1058251 -201270096 + AluSx SINE Alu 14 312 0 234 354 42 23 chr4 1058772 1058987 -201269360 + MIR SINE MIR 25 243 -19 228 297 121 11 chr4 1059345 1059527 -201268820 + L1MDa LINE L1 1886 2087 -4634 2194 129 0 3 chr4 1060553 1060862 -201267485 - AluSx SINE Alu -4 308 1 232 273 65 0 chr4 1061982 1062059 -201266288 + L1ME3A LINE L1 6051 6132 -38 416 270 94 56 chr4 1062091 1062413 -201265934 + L1MDa LINE L1 3235 3609 -2931 1177 244 4 8 chr4 1062413 1062651 -201265696 + MER8 DNA MER2_type 1 237 -2 416 270 94 56 chr4 1062651 1062664 -201265683 + L1MDa LINE L1 3609 3620 -2920 338 83 0 0 chr4 1062676 1062724 -201265623 + AluYb8 SINE Alu 84 131 -177 1576 55 0 0 chr4 1062756 1062938 -201265409 + AluY SINE Alu 33 214 -97 2255 176 117 4 chr4 1063058 1063552 -201264795 - L1MB4 LINE L1 -8 6172 5623 565 238 171 6 chr4 1063553 1063734 -201264613 + LTR16A1 LTR ERVL 247 457 0 2386 107 3 0 chr4 1064133 1064443 -201263904 + AluSx SINE Alu 1 311 -1 198 258 40 113 chr4 1064968 1065092 -201263255 - MIR SINE MIR -111 151 37 258 0 30 0 chr4 1065232 1065265 -201263082 + (TTTG)n Simple_repeat Simple_repeat 2 116 0 2174 119 0 3 chr4 1065265 1065547 -201262800 - AluSx SINE Alu -9 303 1 951 254 82 21 chr4 1065631 1066212 -201262135 - L1ME LINE L1 -3750 2465 1892 560 269 14 30 chr4 1066224 1066443 -201261904 - L1ME LINE L1 -4216 2000 1423 * 4541 171 22 30 chr4 1066430 1067012 -201261335 - L1MB1 LINE L1 -1 6167 5582 2019 105 84 3 chr4 1067012 1067297 -201261050 - AluSg1 SINE Alu -1 308 1 4541 171 22 30 chr4 1067297 1068120 -201260227 - L1MB1 LINE L1 -586 5582 4772 2002 126 22 41 chr4 1068120 1068438 -201259909 - AluSx SINE Alu 0 312 1 4541 171 22 30 chr4 1068438 1068486 -201259861 - L1MB1 LINE L1 -1396 4772 4725 6817 175 34 14 chr4 1068492 1069495 -201258852 + L1 LINE L1 3255 4299 -1847 2146 96 21 11 chr4 1069495 1069798 -201258549 + AluY SINE Alu 1 306 0 6817 175 34 14 chr4 1069798 1070260 -201258087 + L1 LINE L1 4299 4750 -1396 686 264 89 84 chr4 1070369 1071101 -201257246 - L1ME LINE L1 -4896 1321 684 286 301 11 23 chr4 1071337 1071513 -201256834 - L1ME LINE L1 -5607 598 425 619 153 51 0 chr4 1071691 1071809 -201256538 + MSTD LTR MaLR 273 396 0 470 301 164 14 chr4 1071809 1072101 -201256246 + L2 LINE L2 2315 2650 -664 252 296 58 64 chr4 1072360 1072532 -201255815 + L2 LINE L2 3142 3312 -1 249 325 44 26 chr4 1072700 1072814 -201255533 + L3 LINE CR1 332 447 -1130 187 250 0 0 chr4 1073137 1073181 -201255166 + L3 LINE CR1 410 453 -1124 342 188 75 25 chr4 1073344 1073424 -201254923 - L2 LINE L2 -37 3235 3152 337 294 59 13 chr4 1074095 1074248 -201254099 + L3 LINE CR1 1195 1354 -223 2239 112 3 32 chr4 1074497 1074810 -201253537 - AluSx SINE Alu -8 304 1 6002 222 82 70 chr4 1075104 1076736 -201251611 - MER52A LTR ERV1 0 1755 104 1056 203 121 4 chr4 1076798 1077054 -201251293 - MER52A LTR ERV1 -1469 286 1 470 261 85 71 chr4 1077383 1077594 -201250753 - MIR SINE MIR -21 241 28 198 0 0 0 chr4 1077922 1077944 -201250403 + (T)n Simple_repeat Simple_repeat 1 22 0 259 291 13 32 chr4 1079025 1079183 -201249164 + G-rich Low_complexity Low_complexity 3 157 0 * 297 222 16 60 chr4 1079095 1079366 -201248981 + (TGGG)n Simple_repeat Simple_repeat 1 259 0 199 337 36 0 chr4 1079426 1079509 -201248838 + MIR3 SINE MIR 114 199 -9 858 276 56 0 chr4 1080267 1080499 -201247848 + MIR SINE MIR 8 252 -10 429 308 19 30 chr4 1080688 1080951 -201247396 - L1MC5 LINE L1 -215 7746 7487 610 237 28 96 chr4 1081462 1081753 -201246594 - L1MC5 LINE L1 -844 7117 6847 413 304 55 55 chr4 1081802 1082019 -201246328 - L1MC4a LINE L1 -1137 6671 6455 14602 125 27 12 chr4 1082039 1083848 -201244499 - Tigger1 DNA MER2_type 0 2418 564 1838 144 34 27 chr4 1083848 1084140 -201244207 + AluJo SINE Alu 1 294 -18 14602 125 27 12 chr4 1084140 1084705 -201243642 - Tigger1 DNA MER2_type -1854 564 9 374 269 12 76 chr4 1084827 1084998 -201243349 - L1MC4a LINE L1 -1537 6271 6112 3171 227 111 48 chr4 1084998 1085846 -201242501 + L1MEc LINE L1 2179 2972 -3243 1606 145 0 9 chr4 1085846 1086074 -201242273 + AluSg/x SINE Alu 75 300 -12 3171 227 111 48 chr4 1086074 1086414 -201241933 + L1MEc LINE L1 2972 3289 -2926 1466 205 28 11 chr4 1086414 1086697 -201241650 + AluJb SINE Alu 1 288 -14 3171 227 111 48 chr4 1086697 1087036 -201241311 + L1MEc LINE L1 3289 3753 -2462 2223 98 16 16 chr4 1087129 1087434 -201240913 - AluSx SINE Alu -7 305 1 253 264 112 8 chr4 1087458 1087583 -201240764 - HAL1 LINE L1 -2280 227 90 587 275 104 40 chr4 1087633 1087943 -201240404 - L1MEd LINE L1 -4502 1627 1338 2523 68 6 6 chr4 1087943 1088254 -201240093 - AluY SINE Alu 0 311 1 587 275 104 40 chr4 1088254 1088834 -201239513 - L1MEd LINE L1 -4791 1338 692 35 41 0 0 chr4 1096278 1096327 -201232020 + GC_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 1097687 1097708 -201230639 + GC_rich Low_complexity Low_complexity 1 21 0 515 96 48 10 chr4 1097921 1098025 -201230322 + C-rich Low_complexity Low_complexity 1 108 0 181 238 71 0 chr4 1098685 1098727 -201229620 + MER5B DNA MER1_type 7 51 -127 382 216 104 8 chr4 1098742 1098867 -201229480 + L1MC4a LINE L1 6124 6260 -1548 1451 220 20 41 chr4 1098935 1098987 -201229360 - Charlie1 DNA MER1_type -6 2755 2703 1678 114 35 98 chr4 1098987 1099286 -201229061 + AluJb SINE Alu 1 281 -31 2277 110 0 0 chr4 1099286 1099585 -201228762 + AluSx SINE Alu 14 312 0 1678 114 35 98 chr4 1099585 1099601 -201228746 + AluJb SINE Alu 281 296 -16 1451 220 20 41 chr4 1099601 1099939 -201228408 - Charlie1 DNA MER1_type -58 2703 2373 333 191 0 31 chr4 1101450 1101784 -201226563 + (TTCA)n Simple_repeat Simple_repeat 1 323 0 524 130 0 53 chr4 1101808 1101977 -201226370 + (TTCA)n Simple_repeat Simple_repeat 3 162 0 242 303 45 8 chr4 1103523 1103655 -201224692 + L2 LINE L2 2837 2973 -340 6095 224 61 20 chr4 1104548 1106545 -201221802 + L1M4 LINE L1 9 2096 -4550 11524 136 77 9 chr4 1106554 1108057 -201220290 + L1M4c LINE L1 20 1724 -4660 1979 90 115 4 chr4 1108057 1108335 -201220012 + AluSq SINE Alu 1 309 -4 11524 136 77 9 chr4 1108335 1109037 -201219310 + L1M4c LINE L1 1724 2376 -4008 532 181 0 0 chr4 1109037 1109131 -201219216 - AluJ/FRAM SINE Alu -3 309 216 2641 192 30 3 chr4 1109244 1109811 -201218536 + L1MB3 LINE L1 5586 6167 -16 458 298 31 31 chr4 1109828 1110120 -201218227 - L1M4c LINE L1 -4144 2240 1949 2064 113 26 29 chr4 1110195 1110506 -201217841 + AluSx SINE Alu 1 310 -2 334 257 44 53 chr4 1110528 1110734 -201217613 + L1M4 LINE L1 2514 2717 -3929 4151 227 63 49 chr4 1110754 1111650 -201216697 + L1M4 LINE L1 2771 3653 -2991 1863 130 72 10 chr4 1111650 1111942 -201216405 + AluJb SINE Alu 1 310 -2 4151 227 63 49 chr4 1111942 1111982 -201216365 + L1M4 LINE L1 3653 3691 -2953 2289 103 0 7 chr4 1111982 1112283 -201216064 + AluY SINE Alu 1 299 -12 4151 227 63 49 chr4 1112283 1112887 -201215460 + L1M4 LINE L1 3691 4334 -2310 3189 221 25 30 chr4 1112892 1113772 -201214575 + L1M4 LINE L1 4642 5517 -1127 284 292 109 22 chr4 1114333 1114470 -201213877 + MIR3 SINE MIR 18 166 -42 251 326 34 14 chr4 1115296 1115443 -201212904 + (CA)n Simple_repeat Simple_repeat 1 150 0 226 307 12 42 chr4 1115876 1116042 -201212305 + G-rich Low_complexity Low_complexity 3 163 0 26 50 0 0 chr4 1116366 1116406 -201211941 + AT_rich Low_complexity Low_complexity 1 40 0 1082 219 26 0 chr4 1117778 1118011 -201210336 - MLT1E2 LTR MaLR 0 626 388 236 242 15 15 chr4 1118022 1118088 -201210259 - MLT1E1 LTR MaLR -530 124 59 2307 150 20 60 chr4 1118109 1118555 -201209792 - MSTC LTR MaLR 0 428 1 284 278 14 0 chr4 1119166 1119238 -201209109 + L2 LINE L2 2553 2625 -689 223 186 0 29 chr4 1119251 1119321 -201209026 + (TA)n Simple_repeat Simple_repeat 1 68 0 414 234 32 60 chr4 1119327 1119575 -201208772 - L1ME LINE L1 -404 5717 5416 1071 205 4 39 chr4 1120670 1120904 -201207443 + AluJb SINE Alu 74 299 -13 7040 107 25 21 chr4 1120907 1122147 -201206200 - HSMAR2 DNA Mariner -55 1247 3 195 100 0 0 chr4 1122801 1122831 -201205516 + (A)n Simple_repeat Simple_repeat 1 30 0 477 271 26 42 chr4 1122890 1123082 -201205265 + MIR SINE MIR 30 218 -44 2266 131 50 77 chr4 1123812 1124256 -201204091 + MSTB1 LTR MaLR 1 432 0 259 252 93 0 chr4 1124812 1124919 -201203428 - L2 LINE L2 -1 3312 3196 1214 207 29 19 chr4 1125185 1125494 -201202853 + MLT1B LTR MaLR 79 390 0 654 251 55 42 chr4 1125535 1125842 -201202505 - LTR37A LTR ERV1 -111 315 5 281 275 0 11 chr4 1126752 1126843 -201201504 - MLT1F1 LTR MaLR 0 567 478 345 315 0 0 chr4 1127016 1127194 -201201153 + C-rich Low_complexity Low_complexity 1 178 0 970 150 23 6 chr4 1130369 1130542 -201197805 - AluJo SINE Alu -125 187 12 297 284 68 34 chr4 1130835 1130983 -201197364 + MIR3 SINE MIR 21 173 -35 969 356 87 73 chr4 1131895 1132384 -201195963 + L1M4 LINE L1 2734 3215 -2931 1917 158 10 3 chr4 1132384 1132694 -201195653 + AluSx SINE Alu 1 312 0 969 356 87 73 chr4 1132694 1133733 -201194614 + L1M4 LINE L1 3215 4288 -1858 2111 120 7 0 chr4 1133733 1134041 -201194306 + AluSq SINE Alu 1 310 -3 969 356 87 73 chr4 1134041 1134131 -201194216 + L1M4 LINE L1 4288 4375 -1771 267 289 160 5 chr4 1134660 1134816 -201193531 + MIR SINE MIR 10 187 -72 2311 77 0 3 chr4 1136203 1136500 -201191847 - AluY SINE Alu -15 296 1 895 206 12 6 chr4 1136553 1136723 -201191624 - L1MB7 LINE L1 -10 6174 6004 328 270 0 63 chr4 1136898 1137024 -201191323 - MSTB1 LTR MaLR -314 118 1 266 133 0 0 chr4 1137068 1137113 -201191234 - MLT2A2 LTR ERVL -2 451 407 594 266 132 20 chr4 1137125 1137537 -201190810 - MLT-int LTR MaLR -381 1354 841 680 199 15 0 chr4 1137721 1137857 -201190490 + MLT1A1 LTR MaLR 227 364 -1 1595 265 54 17 chr4 1137881 1138486 -201189861 - L1MB7 LINE L1 -187 5997 5335 2158 112 0 3 chr4 1138486 1138789 -201189558 - AluSx SINE Alu -10 302 1 1595 265 54 17 chr4 1138789 1138857 -201189490 - L1MB7 LINE L1 -849 5335 5271 216 291 25 0 chr4 1143453 1143532 -201184815 + (CA)n Simple_repeat Simple_repeat 1 81 0 219 256 166 25 chr4 1144778 1144977 -201183370 + L2 LINE L2 2355 2581 -733 201 39 0 0 chr4 1146483 1146509 -201181838 + (A)n Simple_repeat Simple_repeat 1 26 0 186 266 0 0 chr4 1149936 1150015 -201178332 + (CA)n Simple_repeat Simple_repeat 2 80 0 240 355 58 11 chr4 1152310 1152735 -201175612 + L1ME LINE L1 1267 1877 -4954 2199 74 0 0 chr4 1152754 1153038 -201175309 + AluSg SINE Alu 11 294 -16 489 240 58 90 chr4 1153358 1153670 -201174677 + L1ME LINE L1 2759 3035 -3906 1532 179 29 18 chr4 1153670 1153794 -201174553 + AluJo SINE Alu 1 122 -190 195 42 0 0 chr4 1153794 1153818 -201174529 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1532 179 29 18 chr4 1153818 1153972 -201174375 + AluJo SINE Alu 122 282 -30 489 240 58 90 chr4 1153972 1154101 -201174246 + L1ME LINE L1 3035 3167 -3774 433 275 89 59 chr4 1154093 1154329 -201174018 + L1ME LINE L1 4803 5045 -1896 * 556 235 67 0 chr4 1154329 1154448 -201173899 - FLAM_C SINE Alu -16 127 1 242 287 35 0 chr4 1154458 1154545 -201173802 + L1ME LINE L1 5075 5164 -1777 2122 113 20 0 chr4 1154545 1154838 -201173509 + AluSx SINE Alu 1 299 -13 633 129 20 0 chr4 1154838 1154939 -201173408 + AluSg/x SINE Alu 208 310 0 419 278 93 5 chr4 1154939 1155133 -201173214 + L1ME LINE L1 5177 5387 -1554 641 297 154 22 chr4 1155135 1155674 -201172673 + L1ME LINE L1 5420 6029 -912 552 282 114 16 chr4 1155801 1156174 -201172173 + L1ME LINE L1 6164 6594 -363 225 154 0 0 chr4 1156480 1156519 -201171828 + GA-rich Low_complexity Low_complexity 2 40 0 218 205 0 0 chr4 1158428 1158467 -201169880 + (CA)n Simple_repeat Simple_repeat 1 39 0 194 302 35 0 chr4 1158473 1158559 -201169788 + L2 LINE L2 3155 3243 -29 218 204 10 92 chr4 1158929 1159125 -201169222 + (TG)n Simple_repeat Simple_repeat 1 180 0 252 288 16 38 chr4 1161885 1162069 -201166278 + (TG)n Simple_repeat Simple_repeat 1 180 0 601 231 109 7 chr4 1166676 1166823 -201161524 - AluJb SINE Alu -10 302 141 23 0 0 0 chr4 1166897 1166920 -201161427 + AT_rich Low_complexity Low_complexity 1 23 0 2127 130 0 0 chr4 1166929 1167228 -201161119 - AluSx SINE Alu -9 303 5 432 315 46 5 chr4 1168438 1168654 -201159693 - MLT1J LTR MaLR -16 495 271 470 359 53 18 chr4 1169606 1169946 -201158401 - L1MD2 LINE L1 -444 5915 5564 308 236 101 0 chr4 1178565 1178654 -201149693 + L1MC3 LINE L1 7685 7782 -3 250 264 60 36 chr4 1180163 1180330 -201148017 + (CAGGG)n Simple_repeat Simple_repeat 4 174 0 252 245 40 20 chr4 1183378 1183529 -201144818 + (CG)n Simple_repeat Simple_repeat 1 154 0 246 184 37 59 chr4 1183611 1183747 -201144600 + (CCGCG)n Simple_repeat Simple_repeat 4 136 0 23 0 0 0 chr4 1183758 1183781 -201144566 + GC_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr4 1183865 1183885 -201144462 + (CGGGG)n Simple_repeat Simple_repeat 2 21 0 2212 116 0 3 chr4 1186728 1187030 -201141317 - AluSq SINE Alu -12 301 1 2091 155 112 4 chr4 1187124 1187589 -201140758 - L1MA8 LINE L1 -6 6285 5771 199 400 22 0 chr4 1187631 1187721 -201140626 + MIR SINE MIR 97 188 -74 1319 227 96 14 chr4 1187877 1188243 -201140104 - MSTD LTR MaLR 0 396 1 824 285 112 75 chr4 1188339 1188780 -201139567 + L1MEd LINE L1 332 756 -5660 935 120 0 0 chr4 1188780 1188905 -201139442 - FLAM_C SINE Alu -8 125 1 824 285 112 75 chr4 1188905 1189620 -201138727 + L1MEd LINE L1 756 1530 -4886 321 353 78 41 chr4 1189642 1189860 -201138487 + L1MEd LINE L1 1407 1632 -4794 704 244 73 23 chr4 1189867 1190145 -201138202 - MLT1E LTR MaLR -2 591 235 6056 211 92 56 chr4 1190371 1190803 -201137544 - L1MB3 LINE L1 -7 6176 5761 2627 100 28 17 chr4 1190803 1191163 -201137184 + THE1B LTR MaLR 1 364 0 6056 211 92 56 chr4 1191163 1191419 -201136928 - L1MB3 LINE L1 -422 5761 5516 192 97 0 0 chr4 1191419 1191450 -201136897 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6056 211 92 56 chr4 1191450 1191500 -201136847 - L1MB3 LINE L1 -667 5516 5469 1467 172 36 20 chr4 1191500 1191687 -201136660 - AluJo SINE Alu 0 312 117 225 0 0 0 chr4 1191687 1191712 -201136635 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1467 172 36 20 chr4 1191712 1191827 -201136520 - AluJo SINE Alu -195 117 5 6056 211 92 56 chr4 1191827 1193437 -201134910 - L1MB3 LINE L1 -714 5469 3919 1705 164 42 0 chr4 1193437 1193723 -201134624 - AluJb SINE Alu -14 298 1 6056 211 92 56 chr4 1193723 1193739 -201134608 - L1MB3 LINE L1 -2264 3919 3905 1928 151 10 10 chr4 1193739 1194050 -201134297 - AluJo SINE Alu -1 311 1 6056 211 92 56 chr4 1194050 1195118 -201133229 - L1MB3 LINE L1 -2278 3905 2614 191 373 20 59 chr4 1195432 1195636 -201132711 - MIR SINE MIR -34 228 33 2015 226 28 67 chr4 1196642 1197067 -201131280 - L1MC/D LINE L1 -466 5776 5336 1907 178 36 0 chr4 1197067 1197399 -201130948 + MER2 DNA MER2_type 1 344 0 2015 226 28 67 chr4 1197399 1198093 -201130254 - L1MC/D LINE L1 -906 5336 4617 2122 104 0 4 chr4 1198093 1198407 -201129940 - AluSc SINE Alu 0 313 1 1791 171 0 16 chr4 1198407 1198712 -201129635 - AluJo SINE Alu -12 300 1 2015 226 28 67 chr4 1198712 1198789 -201129558 - L1MC/D LINE L1 -1534 4708 4630 2330 103 0 0 chr4 1198795 1199097 -201129250 - AluSq SINE Alu -11 302 1 1065 210 186 35 chr4 1199111 1199234 -201129113 + LTR54B LTR ERV1 1 104 -394 1582 176 29 0 chr4 1199234 1199532 -201128815 + AluJo SINE Alu 1 306 0 1065 210 186 35 chr4 1199532 1199807 -201128540 + LTR54B LTR ERV1 104 472 -26 624 151 123 0 chr4 1199807 1199913 -201128434 + FLAM_A SINE Alu 1 119 -14 1065 210 186 35 chr4 1199913 1199941 -201128406 + LTR54B LTR ERV1 472 494 -4 1621 181 7 11 chr4 1200670 1200957 -201127390 + AluJo SINE Alu 1 286 -26 5867 219 32 56 chr4 1201524 1202071 -201126276 - L1M4 LINE L1 -1449 4933 4374 7283 94 27 17 chr4 1202071 1203068 -201125279 - LTR13 LTR ERVK 0 1007 1 5867 219 32 56 chr4 1203068 1203183 -201125164 - L1M4 LINE L1 -2008 4374 4258 225 0 0 0 chr4 1203183 1203208 -201125139 + (TG)n Simple_repeat Simple_repeat 2 26 0 2210 80 0 7 chr4 1203208 1203495 -201124852 - AluSp SINE Alu -28 285 1 1581 191 3 16 chr4 1203498 1203801 -201124546 - AluJb SINE Alu -13 299 1 5867 219 32 56 chr4 1203801 1204662 -201123685 - L1M4 LINE L1 -2125 4257 3377 1640 143 108 7 chr4 1204662 1204941 -201123406 - AluJb SINE Alu -5 307 1 5867 219 32 56 chr4 1204941 1205124 -201123223 - L1M4 LINE L1 -3005 3377 3191 3400 56 2 43 chr4 1205124 1205526 -201122821 - L1PA8 LINE L1 -2 6170 5788 2403 79 0 13 chr4 1205526 1205841 -201122506 - AluY SINE Alu 0 311 1 3400 56 2 43 chr4 1205841 1205905 -201122442 - L1PA8 LINE L1 -384 5788 5723 5867 219 32 56 chr4 1205905 1206180 -201122167 - L1M4 LINE L1 -3191 3191 2997 2951 92 57 7 chr4 1206180 1206603 -201121744 - MLT2A1 LTR ERVL 0 444 1 5867 219 32 56 chr4 1206603 1206746 -201121601 - L1M4 LINE L1 -3385 2997 2852 1732 221 79 16 chr4 1207562 1208588 -201119759 - L1M4 LINE L1 -3473 2909 1723 * 2388 229 33 24 chr4 1208584 1208606 -201119741 + L1MB4 LINE L1 4685 4705 -1475 2265 83 7 3 chr4 1208606 1208907 -201119440 + AluY SINE Alu 1 302 -9 2388 229 33 24 chr4 1208907 1209511 -201118836 + L1MB4 LINE L1 4705 5337 -843 2162 93 35 0 chr4 1209511 1209801 -201118546 - AluSx SINE Alu -12 300 1 2388 229 33 24 chr4 1209801 1210291 -201118056 + L1MB4 LINE L1 5337 5821 -359 420 286 11 6 chr4 1210289 1210464 -201117883 + L1M4 LINE L1 2695 2870 -3276 * 1663 209 32 0 chr4 1210470 1210814 -201117533 + L1MB4 LINE L1 5826 6180 0 2036 256 72 1 chr4 1210992 1211889 -201116458 - L1MB5 LINE L1 -133 6041 5080 248 303 0 34 chr4 1211940 1212118 -201116229 + (CCGCT)n Simple_repeat Simple_repeat 2 173 0 * 297 179 0 77 chr4 1212040 1212443 -201115904 + CT-rich Low_complexity Low_complexity 1 372 0 262 276 10 20 chr4 1212853 1212951 -201115396 + L1M4c LINE L1 1233 1329 -5055 2768 43 0 20 chr4 1212951 1213302 -201115045 + L1PA5 LINE L1 5811 6154 0 1142 123 0 0 chr4 1213359 1213514 -201114833 + AluSx SINE Alu 1 155 -157 756 264 81 4 chr4 1213522 1213757 -201114590 + MER45B DNA AcHobo 244 496 -544 949 143 0 0 chr4 1213761 1213901 -201114446 + AluSx SINE Alu 148 287 -23 1532 296 77 0 chr4 1213955 1214539 -201113808 + MER45B DNA AcHobo 206 834 -206 303 151 43 158 chr4 1214540 1214566 -201113781 + MER45B DNA AcHobo 777 804 -777 2202 96 3 6 chr4 1214566 1214878 -201113469 + AluY SINE Alu 1 311 0 303 151 43 158 chr4 1214878 1214990 -201113357 + MER45B DNA AcHobo 804 899 -141 2010 89 37 0 chr4 1214994 1215113 -201113234 + AluSc SINE Alu 1 114 -203 188 0 74 0 chr4 1215113 1215140 -201113207 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2010 89 37 0 chr4 1215140 1215327 -201113020 + AluSc SINE Alu 114 317 0 638 121 0 0 chr4 1215333 1215424 -201112923 + AluSg/x SINE Alu 210 300 -12 1236 161 28 117 chr4 1215435 1215863 -201112484 + L1M1 LINE L1 5178 5579 -724 477 49 99 0 chr4 1216842 1216923 -201111424 + L1M1 LINE L1 5574 5662 -641 1498 140 0 9 chr4 1217207 1217450 -201110897 + AluJb SINE Alu 64 304 0 370 273 28 103 chr4 1218048 1218301 -201110046 + MER21B LTR ERV1 13 246 -617 686 263 64 11 chr4 1218387 1218704 -201109643 + MER21B LTR ERV1 466 806 -125 557 112 0 78 chr4 1218736 1218852 -201109495 + MER4D LTR ERV1 1 107 -796 3220 187 103 72 chr4 1219007 1219712 -201108635 - LTR28 LTR ERV1 -69 951 209 2436 68 0 7 chr4 1219712 1220019 -201108328 + AluY SINE Alu 1 305 -6 3220 187 103 72 chr4 1220019 1220235 -201108112 - LTR28 LTR ERV1 -811 209 1 * 3834 119 37 78 chr4 1220235 1220591 -201107756 + MER4D LTR ERV1 103 472 -400 2248 86 16 3 chr4 1220591 1220895 -201107452 - AluSc SINE Alu -1 308 1 3834 119 37 78 chr4 1220895 1221341 -201107006 + MER4D LTR ERV1 472 872 0 518 268 131 13 chr4 1221644 1221915 -201106432 + L1ME3 LINE L1 5862 6164 0 224 352 138 19 chr4 1223822 1224032 -201104315 + MIR SINE MIR 2 236 -26 674 178 23 23 chr4 1224143 1224272 -201104075 - AluJb SINE Alu -180 132 4 545 165 189 43 chr4 1225516 1225680 -201102667 - MER20 DNA MER1_type -31 188 1 1758 93 4 8 chr4 1225863 1226110 -201102237 - AluSx SINE Alu -3 309 64 1012 167 6 0 chr4 1226220 1226388 -201101959 + AluJb SINE Alu 133 301 -11 208 349 64 9 chr4 1226659 1226768 -201101579 + L3b LINE CR1 1271 1385 -198 248 137 20 0 chr4 1227768 1227819 -201100528 + G-rich Low_complexity Low_complexity 2 53 0 183 355 153 16 chr4 1228357 1228540 -201099807 + L2 LINE L2 1166 1373 -1941 1287 111 0 0 chr4 1228672 1229030 -201099317 + (G)n Simple_repeat Simple_repeat 1 359 0 184 261 68 57 chr4 1231530 1231618 -201096729 + L2 LINE L2 1891 1979 -1335 22 0 0 0 chr4 1232009 1232031 -201096316 + GC_rich Low_complexity Low_complexity 1 22 0 506 239 163 38 chr4 1234366 1234575 -201093772 - MER58 DNA MER1_type -2182 238 4 639 254 0 8 chr4 1235843 1235977 -201092370 + FLAM_A SINE Alu 2 134 -8 1092 128 6 28 chr4 1236085 1236264 -201092083 - AluSg/x SINE Alu -3 309 135 2190 103 3 0 chr4 1236264 1236556 -201091791 - AluY SINE Alu -18 293 1 2484 60 0 13 chr4 1236566 1236881 -201091466 - AluY SINE Alu 0 311 1 1358 214 30 4 chr4 1237857 1238128 -201090219 + AluJo SINE Alu 1 278 -34 194 307 227 56 chr4 1241024 1241610 -201086737 + L2 LINE L2 1796 2481 -833 258 353 88 20 chr4 1241911 1242115 -201086232 + L2 LINE L2 3092 3309 -4 212 330 113 0 chr4 1242559 1242665 -201085682 + L2 LINE L2 1461 1578 -1736 209 326 111 35 chr4 1242857 1243029 -201085318 + L2 LINE L2 1829 2013 -1301 793 308 101 38 chr4 1243034 1243226 -201085121 + L2 LINE L2 2127 2305 -1009 1543 190 11 0 chr4 1243226 1243536 -201084811 - AluJo SINE Alu 0 313 1 793 308 101 38 chr4 1243536 1243845 -201084502 + L2 LINE L2 2305 2661 -653 225 336 99 0 chr4 1243966 1244097 -201084250 + L2 LINE L2 2886 3029 -284 211 289 214 27 chr4 1244110 1244297 -201084050 + L2 LINE L2 2998 3219 -94 23 0 0 0 chr4 1244327 1244350 -201083997 + AT_rich Low_complexity Low_complexity 1 23 0 926 324 140 20 chr4 1245002 1245765 -201082582 + Charlie7 DNA MER1_type 371 1225 -1387 846 226 32 16 chr4 1245901 1246087 -201082260 + AluJo SINE Alu 123 311 -1 1285 234 72 37 chr4 1246189 1246647 -201081700 + L1MB7 LINE L1 3454 3927 -2219 434 163 0 12 chr4 1246647 1246727 -201081620 + MLT1A2 LTR MaLR 296 374 0 1665 236 168 27 chr4 1246737 1246838 -201081509 + L1MB7 LINE L1 5213 5298 -886 2203 68 3 20 chr4 1246838 1247134 -201081213 - AluY SINE Alu -20 291 1 1665 236 168 27 chr4 1247134 1247461 -201080886 + L1MB7 LINE L1 5298 5578 -606 2021 97 7 52 chr4 1247461 1247769 -201080578 + AluSc SINE Alu 1 294 -15 1665 236 168 27 chr4 1247769 1248165 -201080182 + L1MB7 LINE L1 5578 6184 0 195 167 28 28 chr4 1248249 1248321 -201080026 + (CAGGG)n Simple_repeat Simple_repeat 4 75 0 565 196 36 29 chr4 1248507 1248645 -201079702 + MER33 DNA MER1_type 27 165 -159 801 188 0 7 chr4 1248645 1248789 -201079558 - FLAM_C SINE Alu 0 143 1 2187 85 7 3 chr4 1248800 1249094 -201079253 - AluY SINE Alu -16 295 1 450 172 117 14 chr4 1249102 1249247 -201079100 + MER33 DNA MER1_type 157 316 -8 339 217 24 12 chr4 1249561 1249644 -201078703 - MER20 DNA MER1_type -135 84 1 311 274 263 5 chr4 1249733 1249919 -201078428 - L1ME LINE L1 -348 5818 5585 269 254 0 0 chr4 1250071 1250130 -201078217 + (CGTG)n Simple_repeat Simple_repeat 1 59 0 908 279 75 53 chr4 1250131 1250582 -201077765 - MLT2B1 LTR ERVL -58 462 2 316 227 31 0 chr4 1250591 1250688 -201077659 - L1ME LINE L1 -728 5436 5337 1162 176 0 10 chr4 1250688 1250887 -201077460 + AluSg/x SINE Alu 105 301 -11 1309 290 77 6 chr4 1250911 1251445 -201076902 - L1ME LINE L1 -850 5296 4725 1200 233 40 20 chr4 1251481 1251883 -201076464 - L1MB2 LINE L1 -1 6182 5787 1504 230 101 7 chr4 1251894 1252350 -201075997 - MLT2B2 LTR ERVL -15 500 2 1582 220 51 3 chr4 1252361 1252693 -201075654 - MER7A DNA MER2_type 0 346 1 411 236 126 8 chr4 1252693 1252809 -201075538 - L1MB2 LINE L1 -387 5784 5650 293 263 42 34 chr4 1252946 1253064 -201075283 - L1MB2 LINE L1 -706 5477 5359 227 120 250 10 chr4 1253165 1253265 -201075082 - L1MB2 LINE L1 -920 5226 5103 260 272 0 12 chr4 1253528 1253609 -201074738 - HAL1 LINE L1 -847 1660 1581 2177 108 7 3 chr4 1256745 1257050 -201071297 - AluSx SINE Alu -6 306 1 438 326 97 81 chr4 1257491 1257770 -201070577 + L1MEd LINE L1 561 834 -1664 1665 137 32 11 chr4 1257770 1258054 -201070293 + AluJo SINE Alu 1 290 -22 438 326 97 81 chr4 1258054 1258117 -201070230 + L1MEd LINE L1 834 895 -1603 1606 143 37 0 chr4 1258117 1258362 -201069985 + AluJb SINE Alu 35 288 -24 2063 90 35 7 chr4 1258368 1258658 -201069689 + AluSx SINE Alu 1 298 -14 438 326 97 81 chr4 1258658 1259175 -201069172 + L1MEd LINE L1 899 1523 -975 364 267 30 0 chr4 1259219 1259320 -201069027 - MER3 DNA MER1_type -76 133 30 487 301 65 38 chr4 1259327 1259513 -201068834 + L1MEd LINE L1 2320 2510 -3619 394 230 34 34 chr4 1261216 1261394 -201066953 + (CCCCAG)n Simple_repeat Simple_repeat 1 178 0 * 449 254 0 28 chr4 1261280 1261461 -201066886 + C-rich Low_complexity Low_complexity 4 179 0 1571 179 3 7 chr4 1263229 1263525 -201064822 + AluJo SINE Alu 1 295 -17 731 175 0 32 chr4 1263786 1263912 -201064435 + FRAM SINE Alu 38 159 -17 417 306 82 100 chr4 1263985 1264978 -201063369 + L1M4c LINE L1 800 1209 -1566 2282 81 0 0 chr4 1264978 1265275 -201063072 + AluY SINE Alu 1 297 -14 417 306 82 100 chr4 1265275 1265702 -201062645 + L1M4c LINE L1 1209 1642 -1133 2223 93 27 0 chr4 1267096 1267397 -201060950 - AluSc SINE Alu 0 309 1 23 110 0 0 chr4 1269143 1269243 -201059104 + GC_rich Low_complexity Low_complexity 1 100 0 1936 67 4 0 chr4 1274753 1274993 -201053354 - AluSg SINE Alu -69 241 1 1485 184 52 10 chr4 1276806 1277094 -201051253 + AluJo SINE Alu 1 300 -12 1802 159 3 20 chr4 1277425 1277726 -201050621 + AluJo SINE Alu 1 296 -16 209 269 60 18 chr4 1279327 1279494 -201048853 + (TCTCTG)n Simple_repeat Simple_repeat 4 177 0 235 294 49 12 chr4 1280281 1280444 -201047903 + (CGGGG)n Simple_repeat Simple_repeat 2 170 0 227 264 55 22 chr4 1282734 1282825 -201045522 - L1ME LINE L1 -450 5712 5619 1913 259 63 23 chr4 1282972 1283343 -201045004 - L1ME2 LINE L1 -8 6225 5870 2054 93 0 0 chr4 1283343 1283602 -201044745 - AluSc SINE Alu -50 259 1 1913 259 63 23 chr4 1283602 1283955 -201044392 - L1ME2 LINE L1 -363 5870 5472 1456 281 52 38 chr4 1284067 1284696 -201043651 - L1ME2 LINE L1 -942 5273 4631 1525 219 84 30 chr4 1284696 1285065 -201043282 - MLT1B LTR MaLR -1 389 1 1456 281 52 38 chr4 1285065 1285142 -201043205 - L1ME2 LINE L1 -1584 4631 4557 1843 88 0 4 chr4 1285170 1285408 -201042939 + AluSg SINE Alu 55 291 -19 710 274 81 27 chr4 1285410 1285819 -201042528 - L1ME2 LINE L1 -4603 1793 1363 2212 120 0 0 chr4 1285878 1286179 -201042168 + AluSx SINE Alu 1 301 -11 367 291 195 42 chr4 1286229 1286562 -201041785 - L2 LINE L2 -7 3306 2923 798 291 112 3 chr4 1286613 1286953 -201041394 - L2 LINE L2 -518 2796 2420 2163 79 0 0 chr4 1286981 1287258 -201041089 + AluSx SINE Alu 14 290 -22 259 396 7 21 chr4 1292327 1292471 -201035876 - MIR SINE MIR -20 242 101 25 0 0 0 chr4 1293828 1293853 -201034494 + AT_rich Low_complexity Low_complexity 1 25 0 437 215 47 0 chr4 1296823 1296930 -201031417 - LTR45 LTR ERV1 0 525 414 359 262 12 0 chr4 1296944 1297028 -201031319 - LTR45 LTR ERV1 -440 85 1 183 156 0 0 chr4 1301942 1301974 -201026373 + (TG)n Simple_repeat Simple_repeat 1 32 0 342 264 23 0 chr4 1302330 1302417 -201025930 - MER58A DNA MER1_type -18 89 1 315 0 0 0 chr4 1302940 1302975 -201025372 + (TG)n Simple_repeat Simple_repeat 2 36 0 1958 140 90 29 chr4 1303174 1303517 -201024830 - THE1B LTR MaLR 0 364 1 264 329 25 6 chr4 1303761 1303919 -201024428 - L1M4 LINE L1 -3772 2374 2214 318 398 59 5 chr4 1304685 1304871 -201023476 - HAL1 LINE L1 -838 1669 1474 2288 65 45 17 chr4 1304872 1305224 -201023123 - MLT2A1 LTR ERVL -69 375 14 755 280 0 11 chr4 1306745 1306934 -201021413 + MER5A DNA MER1_type 1 187 -2 1003 185 17 0 chr4 1306967 1307145 -201021202 + AluSg/x SINE Alu 130 310 0 199 330 11 34 chr4 1307466 1307554 -201020793 - MIR SINE MIR -157 105 20 506 157 24 0 chr4 1307655 1307738 -201020609 - AluJ/FRAM SINE Alu -8 304 220 300 424 8 4 chr4 1308641 1308884 -201019463 + MIR SINE MIR 8 251 -11 742 174 134 40 chr4 1309059 1309260 -201019087 + L1M4 LINE L1 5402 5621 -563 20407 32 18 0 chr4 1509269 1512380 -200815967 - L1PA4 LINE L1 -246 5909 2746 399 284 11 16 chr4 1512381 1512564 -200815783 + L1MEc LINE L1 2040 2221 -4175 5876 181 40 17 chr4 1512712 1513585 -200814762 - L1MC3 LINE L1 -13 7772 6860 243 0 0 0 chr4 1513585 1513612 -200814735 + (TG)n Simple_repeat Simple_repeat 1 27 0 5876 181 40 17 chr4 1513612 1513994 -200814353 - L1MC3 LINE L1 -925 6860 6488 22 0 0 0 chr4 1514053 1514075 -200814272 + AT_rich Low_complexity Low_complexity 1 22 0 1767 143 3 21 chr4 1514110 1514396 -200813951 - AluJb SINE Alu -31 281 1 419 266 32 19 chr4 1514560 1514714 -200813633 + L1M4 LINE L1 5 160 -6382 701 168 8 46 chr4 1514722 1514853 -200813494 + FLAM_C SINE Alu 5 130 -3 2172 83 0 3 chr4 1514880 1515181 -200813166 + AluY SINE Alu 1 300 -11 252 0 0 0 chr4 1516012 1516040 -200812307 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 498 17 0 0 chr4 1516039 1516098 -200812249 + (GA)n Simple_repeat Simple_repeat 1 59 0 808 170 0 19 chr4 1517313 1517472 -200810875 - FAM SINE Alu -14 171 16 184 266 186 18 chr4 1517866 1517979 -200810368 + L2 LINE L2 3138 3269 -3 187 209 70 0 chr4 1518071 1518114 -200810233 - MIR SINE MIR -77 131 86 1380 199 21 7 chr4 1518431 1518718 -200809629 - AluJo SINE Alu -21 291 1 1630 152 8 0 chr4 1518733 1518996 -200809351 - AluJb SINE Alu -4 308 44 2223 67 7 24 chr4 1519080 1519378 -200808969 + AluY SINE Alu 1 293 -18 2181 85 3 3 chr4 1519393 1519686 -200808661 + AluY SINE Alu 1 293 -18 1572 175 11 3 chr4 1519873 1520158 -200808189 + AluJo SINE Alu 6 292 -20 2053 107 0 3 chr4 1520323 1520612 -200807735 + AluSx SINE Alu 11 298 -14 410 283 88 5 chr4 1521120 1521325 -200807022 + L2 LINE L2 2849 3070 -243 593 219 16 23 chr4 1521378 1521506 -200806841 + FRAM SINE Alu 42 168 -8 1765 111 16 82 chr4 1521529 1521681 -200806666 - AluSx SINE Alu -26 286 162 270 0 0 0 chr4 1521681 1521711 -200806636 + (TA)n Simple_repeat Simple_repeat 2 31 0 1765 111 16 82 chr4 1521711 1521864 -200806483 - AluSx SINE Alu -150 162 1 280 294 0 59 chr4 1521978 1522080 -200806267 + L2 LINE L2 3204 3299 -14 2349 46 0 3 chr4 1522663 1522975 -200805372 - AluY SINE Alu 0 311 1 315 0 0 0 chr4 1523281 1523316 -200805031 + (TG)n Simple_repeat Simple_repeat 2 36 0 321 317 58 10 chr4 1523696 1523800 -200804547 - MIR SINE MIR -133 129 21 822 229 132 50 chr4 1524049 1524533 -200803814 + L1MC5 LINE L1 7276 7799 -162 1045 153 9 65 chr4 1524621 1524711 -200803636 - AluJb SINE Alu -99 213 120 2261 75 0 10 chr4 1524711 1525019 -200803328 - AluY SINE Alu -6 305 1 1045 153 9 65 chr4 1525019 1525143 -200803204 - AluJb SINE Alu -192 120 11 379 232 97 53 chr4 1525636 1525839 -200802508 + MLT1I LTR MaLR 40 233 -176 2206 59 3 7 chr4 1525839 1526151 -200802196 + AluY SINE Alu 1 311 0 379 232 97 53 chr4 1526151 1526206 -200802141 + MLT1I LTR MaLR 233 284 -125 847 185 62 0 chr4 1526206 1526384 -200801963 + MER5A DNA MER1_type 1 189 0 379 232 97 53 chr4 1526384 1526404 -200801943 + MLT1I LTR MaLR 284 407 -2 218 318 38 51 chr4 1526404 1526640 -200801707 - L2 LINE L2 -681 2633 2401 309 276 103 62 chr4 1526728 1526806 -200801541 + L2 LINE L2 3014 3087 -185 2138 116 3 0 chr4 1526806 1527108 -200801239 + AluSx SINE Alu 1 303 -9 309 276 103 62 chr4 1527108 1527272 -200801075 + L2 LINE L2 3087 3266 -6 1703 164 0 4 chr4 1527573 1527848 -200800499 - AluJb SINE Alu -30 282 9 2095 118 0 0 chr4 1527855 1528151 -200800196 - AluSg SINE Alu -14 296 1 2319 80 3 6 chr4 1528286 1528597 -200799750 + AluSp SINE Alu 1 310 -3 254 216 87 101 chr4 1529635 1529659 -200798688 - HAL1 LINE L1 -117 2390 2367 1811 182 0 0 chr4 1529659 1529966 -200798381 - AluSx SINE Alu -5 307 1 254 216 87 101 chr4 1529966 1530009 -200798338 - HAL1 LINE L1 -140 2367 2325 2051 87 0 30 chr4 1530009 1530307 -200798040 + AluSc SINE Alu 1 289 -20 254 216 87 101 chr4 1530307 1530446 -200797901 - HAL1 LINE L1 -182 2325 2186 491 240 24 32 chr4 1530472 1530719 -200797628 - MLT1G1 LTR MaLR -30 565 241 420 239 42 19 chr4 1530806 1530928 -200797419 - MLT1G1 LTR MaLR -357 192 25 856 190 17 34 chr4 1530936 1531115 -200797232 - AluJo SINE Alu -10 302 127 731 246 168 73 chr4 1531155 1531590 -200796757 - HAL1 LINE L1 -358 2149 1757 2235 85 10 3 chr4 1531590 1531896 -200796451 + AluSx SINE Alu 1 308 -4 731 246 168 73 chr4 1531896 1532010 -200796337 - HAL1 LINE L1 -750 1757 1655 2092 105 6 13 chr4 1532010 1532324 -200796023 - AluSx SINE Alu 0 312 1 731 246 168 73 chr4 1532324 1532351 -200795996 - HAL1 LINE L1 -852 1655 1517 2195 91 7 0 chr4 1532360 1532656 -200795691 - AluSx SINE Alu -14 298 1 1678 154 14 3 chr4 1532667 1532952 -200795395 - AluJo SINE Alu -24 288 1 1930 106 10 26 chr4 1532962 1533264 -200795083 - AluSq SINE Alu -16 297 1 2216 160 67 13 chr4 1533281 1533743 -200794604 - L1MB7 LINE L1 -19 6165 5679 2509 48 0 10 chr4 1533744 1534058 -200794289 - AluY SINE Alu 0 311 1 2103 91 17 0 chr4 1534067 1534354 -200793993 - AluSq SINE Alu -21 292 1 1801 172 0 0 chr4 1534354 1534651 -200793696 - AluJb SINE Alu -15 297 1 2325 73 0 16 chr4 1535030 1535344 -200793003 + AluY SINE Alu 3 311 0 848 87 7 58 chr4 1535606 1535744 -200792603 - FLAM_C SINE Alu -2 131 1 2024 88 10 20 chr4 1536031 1536325 -200792022 - AluSg SINE Alu -19 291 1 1850 117 16 26 chr4 1536642 1536949 -200791398 + AluSx SINE Alu 1 304 -8 1635 167 27 3 chr4 1536987 1537286 -200791061 - AluJb SINE Alu -6 306 1 1287 181 7 86 chr4 1537393 1537696 -200790651 - AluJo SINE Alu -31 281 3 239 276 90 26 chr4 1537698 1537854 -200790493 - HAL1 LINE L1 -1067 1440 1275 1633 144 91 0 chr4 1537857 1538142 -200790205 + AluJb SINE Alu 1 311 -1 197 179 0 26 chr4 1538185 1538224 -200790123 + L2 LINE L2 3186 3223 -90 2531 162 59 10 chr4 1538230 1538723 -200789624 - L1MB3 LINE L1 -20 6163 5647 344 185 86 12 chr4 1538741 1538822 -200789525 + L2 LINE L2 3226 3312 -1 355 259 74 12 chr4 1538840 1539002 -200789345 - L1MEd LINE L1 -5033 1339 1168 384 246 127 21 chr4 1539461 1539603 -200788744 - MIR SINE MIR -92 170 14 1424 184 41 4 chr4 1539837 1540108 -200788239 - AluJo SINE Alu -31 281 1 551 166 14 35 chr4 1540152 1540297 -200788050 + CT-rich Low_complexity Low_complexity 4 145 0 1841 133 17 13 chr4 1540332 1540632 -200787715 + AluJb SINE Alu 3 303 -9 1547 168 13 36 chr4 1540640 1540944 -200787403 + AluJb SINE Alu 1 297 -15 540 196 107 0 chr4 1540951 1541063 -200787284 + AluJo/FLAM SINE Alu 2 125 -187 1915 135 26 0 chr4 1541063 1541367 -200786980 - AluSx SINE Alu 0 312 1 406 213 138 50 chr4 1541367 1541527 -200786820 - L1MEd LINE L1 -5002 1382 1209 1581 153 19 0 chr4 1541530 1541791 -200786556 - AluJo SINE Alu -10 302 37 2366 59 13 0 chr4 1541823 1542126 -200786221 + AluY SINE Alu 1 307 -4 571 234 194 6 chr4 1542141 1542316 -200786031 - L1MEd LINE L1 -5570 802 595 546 228 32 6 chr4 1542330 1542488 -200785859 - L1MEd LINE L1 -5878 494 333 689 273 48 0 chr4 1542723 1542932 -200785415 - MER20 DNA MER1_type 0 219 1 221 249 205 7 chr4 1543481 1543608 -200784739 + MIR SINE MIR 33 167 -41 203 303 50 50 chr4 1544911 1545030 -200783317 - MIR SINE MIR -141 121 3 207 0 0 0 chr4 1545665 1545688 -200782659 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1473 176 11 8 chr4 1545697 1545964 -200782383 - AluJo SINE Alu -44 268 1 422 190 0 0 chr4 1546054 1546133 -200782214 - FLAM_A SINE Alu -18 124 46 1309 114 21 0 chr4 1546333 1546526 -200781821 + AluJo SINE Alu 1 197 -115 268 358 0 0 chr4 1546593 1546660 -200781687 - MIR3 SINE MIR -49 159 93 242 254 185 28 chr4 1546815 1546921 -200781426 - MIR SINE MIR -67 141 14 2454 60 0 0 chr4 1547173 1547474 -200780873 - AluY SINE Alu -10 301 1 2296 77 3 0 chr4 1548289 1548587 -200779760 + AluSq SINE Alu 1 299 -14 1722 162 3 7 chr4 1549685 1549975 -200778372 - AluJb SINE Alu -18 294 6 2235 111 0 0 chr4 1550095 1550402 -200777945 - AluSx SINE Alu -5 307 1 318 301 154 7 chr4 1550492 1550628 -200777719 + MIR SINE MIR 14 169 -93 1997 114 41 0 chr4 1551057 1551347 -200777000 - AluSc SINE Alu -7 302 1 828 187 0 53 chr4 1552215 1552386 -200775961 - FRAM SINE Alu -12 164 3 1213 206 4 47 chr4 1552539 1552815 -200775532 - L1MC4 LINE L1 -1033 7009 6746 2158 110 0 0 chr4 1553080 1553379 -200774968 - AluSg SINE Alu -10 300 2 24 0 0 0 chr4 1553384 1553408 -200774939 + AT_rich Low_complexity Low_complexity 1 24 0 227 147 44 73 chr4 1553459 1553527 -200774820 - L1ME3A LINE L1 -3 6167 6102 1417 115 14 0 chr4 1553675 1553884 -200774463 - AluSg/x SINE Alu -18 294 83 369 207 30 30 chr4 1554147 1554282 -200774065 - L1M4 LINE L1 -3546 2600 2466 2117 125 0 0 chr4 1554747 1555059 -200773288 + AluSx SINE Alu 1 312 0 754 245 129 134 chr4 1555566 1556341 -200772006 - HAL1 LINE L1 -36 2471 1693 6803 111 19 23 chr4 1556341 1557352 -200770995 + LTR13 LTR ERVK 1 1007 0 754 245 129 134 chr4 1557352 1557470 -200770877 - HAL1 LINE L1 -814 1693 1576 1874 153 0 0 chr4 1557470 1557764 -200770583 - AluSx SINE Alu -18 294 1 754 245 129 134 chr4 1557764 1557777 -200770570 - HAL1 LINE L1 -931 1576 1564 1944 124 7 3 chr4 1557777 1558067 -200770280 - AluSx SINE Alu -21 291 1 754 245 129 134 chr4 1558067 1558545 -200769802 - HAL1 LINE L1 -943 1564 1047 2341 81 3 0 chr4 1558545 1558855 -200769492 - AluY SINE Alu 0 311 1 754 245 129 134 chr4 1558855 1559260 -200769087 - HAL1 LINE L1 -1460 1047 641 220 233 29 17 chr4 1559604 1559680 -200768667 - MIR SINE MIR -125 83 6 2023 146 13 0 chr4 1559765 1560083 -200768264 - AluJb SINE Alu 0 322 1 232 265 0 0 chr4 1560714 1560763 -200767584 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 2143 126 0 16 chr4 1560862 1561172 -200767175 - AluSq SINE Alu -2 311 7 1775 166 7 7 chr4 1561221 1561510 -200766837 - AluSx SINE Alu -11 301 13 1877 115 28 90 chr4 1562307 1562630 -200765717 + AluJb SINE Alu 1 303 -9 2226 113 3 13 chr4 1563093 1563394 -200764953 + AluSg SINE Alu 1 298 -12 1834 129 27 0 chr4 1563609 1563865 -200764482 + AluSq SINE Alu 1 263 -50 261 136 0 0 chr4 1563936 1563980 -200764367 + L1 LINE L1 3892 3935 -2211 811 169 0 8 chr4 1564063 1564193 -200764154 + FRAM SINE Alu 34 162 -14 1846 162 14 27 chr4 1564193 1564490 -200763857 + AluJo SINE Alu 1 293 -19 249 266 194 35 chr4 1564501 1564617 -200763730 + L1ME LINE L1 3947 4043 -2103 2232 111 3 3 chr4 1564617 1564915 -200763432 + AluSx SINE Alu 1 298 -14 249 266 194 35 chr4 1564915 1564941 -200763406 + L1ME LINE L1 4043 4064 -2082 2065 160 0 0 chr4 1564941 1565248 -200763099 + AluSx SINE Alu 1 307 -5 249 266 194 35 chr4 1565248 1565308 -200763039 + L1ME LINE L1 4064 4113 -2033 2052 135 7 0 chr4 1565308 1565596 -200762751 + AluSx SINE Alu 1 290 -22 249 266 194 35 chr4 1565596 1565873 -200762474 + L1ME LINE L1 4113 4503 -1643 2183 136 0 0 chr4 1566085 1566380 -200761967 + AluSx SINE Alu 1 295 -17 370 300 25 31 chr4 1566536 1566648 -200761699 + L1ME LINE L1 5047 5159 -987 719 142 63 16 chr4 1566648 1566775 -200761572 + FLAM_C SINE Alu 1 133 0 370 300 25 31 chr4 1566775 1566822 -200761525 + L1ME LINE L1 5159 5205 -941 334 295 50 77 chr4 1566875 1567173 -200761174 + L1ME LINE L1 5371 5660 -502 588 146 0 11 chr4 1567535 1567624 -200760723 + FLAM SINE Alu 44 131 -12 1675 161 9 54 chr4 1568070 1568386 -200759961 + AluJb SINE Alu 1 302 -10 2390 109 0 0 chr4 1568827 1569139 -200759208 - AluSx SINE Alu 0 312 1 1907 158 0 3 chr4 1569215 1569543 -200758804 - AluJo SINE Alu 0 327 1 2438 80 3 0 chr4 1569591 1569891 -200758456 - AluSg SINE Alu -7 303 3 2206 128 0 0 chr4 1569902 1570206 -200758141 - AluSx SINE Alu -3 309 6 2117 195 92 22 chr4 1570315 1570818 -200757529 - MLT1F LTR MaLR -1 541 4 2295 105 7 7 chr4 1570882 1571188 -200757159 + AluSx SINE Alu 7 312 0 1357 204 9 61 chr4 1571315 1571643 -200756704 - AluJo SINE Alu -1 311 1 346 345 35 71 chr4 1571679 1571934 -200756413 - MIR SINE MIR -16 246 1 209 336 114 0 chr4 1572798 1572929 -200755418 - MIR SINE MIR -65 197 52 572 255 40 0 chr4 1572981 1573130 -200755217 - MER58 DNA MER1_type -66 275 121 340 294 110 0 chr4 1573223 1573369 -200754978 + MER5B DNA MER1_type 3 164 -14 354 237 214 8 chr4 1573378 1573509 -200754838 - MER5A DNA MER1_type -9 180 23 21 0 0 0 chr4 1574956 1574977 -200753370 + AT_rich Low_complexity Low_complexity 1 21 0 2340 95 0 7 chr4 1575599 1575903 -200752444 + AluSx SINE Alu 3 304 -8 2296 79 3 26 chr4 1575907 1576211 -200752136 + AluSp SINE Alu 1 297 -16 2324 60 0 30 chr4 1576836 1577138 -200751209 - AluY SINE Alu -18 293 1 2444 100 3 0 chr4 1577520 1577829 -200750518 - AluSp SINE Alu -3 310 1 639 152 0 0 chr4 1577861 1577960 -200750387 + AluSp/q SINE Alu 207 305 -8 24 67 0 0 chr4 1577967 1578012 -200750335 + AT_rich Low_complexity Low_complexity 1 45 0 2564 71 0 3 chr4 1578012 1578318 -200750029 + AluSg SINE Alu 1 306 0 315 0 0 0 chr4 1578318 1578353 -200749994 + (TA)n Simple_repeat Simple_repeat 2 36 0 2319 112 0 3 chr4 1579021 1579325 -200749022 + AluSx SINE Alu 1 303 -9 2464 86 10 0 chr4 1579832 1580133 -200748214 + AluSx SINE Alu 1 304 -8 2317 101 0 7 chr4 1580499 1580797 -200747550 - AluSx SINE Alu -16 296 1 225 328 0 0 chr4 1581041 1581099 -200747248 - MIR SINE MIR -1 261 204 570 148 0 0 chr4 1581784 1581885 -200746462 + (T)n Simple_repeat Simple_repeat 1 101 0 678 279 79 3 chr4 1582666 1582956 -200745391 + L1MC5 LINE L1 7604 7915 -46 203 241 56 19 chr4 1586762 1586816 -200741531 + MIR SINE MIR 172 227 -35 21 0 0 0 chr4 1589375 1589396 -200738951 + AT_rich Low_complexity Low_complexity 1 21 0 2022 112 0 25 chr4 1589693 1590011 -200738336 - AluSg SINE Alu 0 312 2 2393 86 0 10 chr4 1592923 1593225 -200735122 + AluSg SINE Alu 1 299 -11 504 0 0 0 chr4 1594887 1594943 -200733404 + (CA)n Simple_repeat Simple_repeat 1 56 0 1418 110 11 126 chr4 1597212 1597406 -200730941 - AluJb SINE Alu -11 301 143 2223 111 3 7 chr4 1597406 1597703 -200730644 - AluSx SINE Alu -16 296 1 1418 110 11 126 chr4 1597703 1597771 -200730576 - AluJb SINE Alu -169 143 69 1719 160 45 17 chr4 1597786 1598073 -200730274 - AluJb SINE Alu -17 295 1 728 194 194 0 chr4 1598196 1598376 -200729971 + MER20 DNA MER1_type 1 215 -4 2228 109 0 13 chr4 1600693 1601006 -200727341 - AluSx SINE Alu -3 309 1 549 242 52 47 chr4 1602094 1602305 -200726042 - L1ME LINE L1 -414 5707 5496 1707 194 7 0 chr4 1603278 1603577 -200724770 - AluJo SINE Alu -11 301 1 552 290 149 28 chr4 1605645 1606080 -200722267 + L1MC4 LINE L1 7546 8033 -9 1032 166 22 28 chr4 1606088 1606269 -200722078 - AluJo SINE Alu -7 305 126 227 362 108 14 chr4 1606686 1606965 -200721382 + L1MEd LINE L1 653 957 -5573 339 365 53 53 chr4 1606997 1607150 -200721197 + L1MEd LINE L1 945 1097 -5433 1615 160 64 11 chr4 1607150 1607432 -200720915 + AluJo SINE Alu 1 297 -15 339 365 53 53 chr4 1607432 1607634 -200720713 + L1MEd LINE L1 1096 1300 -5230 5209 144 56 53 chr4 1607692 1609029 -200719318 + L1M4c LINE L1 18 1349 -5035 1703 173 52 25 chr4 1609029 1609394 -200718953 - THE1C LTR MaLR 0 375 1 5209 144 56 53 chr4 1609394 1609802 -200718545 + L1M4c LINE L1 1349 1888 -4496 2482 77 0 3 chr4 1609802 1610101 -200718246 + AluY SINE Alu 1 298 -13 5209 144 56 53 chr4 1610101 1610372 -200717975 + L1M4c LINE L1 1888 2157 -4227 1159 232 6 12 chr4 1610391 1610719 -200717628 + L1M4c LINE L1 3415 3740 -2642 2431 88 0 0 chr4 1610725 1611020 -200717327 + AluSg SINE Alu 1 295 -15 296 160 0 20 chr4 1611020 1611070 -200717277 + Tigger5 DNA MER2_type 2261 2309 -14 1087 166 104 104 chr4 1611072 1611427 -200716920 - LOR1a LTR ERV1 0 497 143 338 295 139 45 chr4 1611881 1612125 -200716222 + L1MEd LINE L1 2307 2573 -3967 1611 176 20 33 chr4 1612845 1613151 -200715196 + AluJo SINE Alu 1 302 -10 211 229 0 0 chr4 1613446 1613494 -200714853 + GA-rich Low_complexity Low_complexity 1 48 0 880 85 0 23 chr4 1614503 1614632 -200713715 + FLAM_C SINE Alu 1 126 -7 377 234 181 27 chr4 1615163 1615351 -200712996 + L1M4c LINE L1 4028 4244 -2138 2075 110 31 3 chr4 1616281 1616571 -200711776 - AluSx SINE Alu -14 298 1 2410 81 0 10 chr4 1617642 1617940 -200710407 - AluSq SINE Alu -18 295 1 734 277 142 3 chr4 1619076 1619379 -200708968 - MLT1C LTR MaLR -106 361 17 2320 89 3 49 chr4 1620920 1621247 -200707100 + AluSx SINE Alu 1 312 0 2166 122 0 3 chr4 1621270 1621566 -200706781 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr4 1626555 1626576 -200701771 + AT_rich Low_complexity Low_complexity 1 21 0 203 217 17 0 chr4 1629059 1629119 -200699228 + (CATA)n Simple_repeat Simple_repeat 3 63 0 2373 99 0 0 chr4 1632383 1632685 -200695662 - AluSq SINE Alu -11 302 1 1665 138 94 7 chr4 1632770 1633045 -200695302 - AluJb SINE Alu -13 299 1 1857 164 7 0 chr4 1634245 1634538 -200693809 - AluJo SINE Alu -17 295 1 251 282 9 73 chr4 1634597 1634707 -200693640 - L2 LINE L2 -9 3304 3202 2207 108 13 0 chr4 1636743 1637050 -200691297 + AluSp SINE Alu 3 313 0 586 154 27 31 chr4 1637073 1637205 -200691142 - MLT1A1 LTR MaLR -38 429 197 1029 102 12 30 chr4 1637239 1637406 -200690941 - AluSg/x SINE Alu -12 300 137 1007 161 0 12 chr4 1637561 1637723 -200690624 + FRAM SINE Alu 1 160 -16 2146 127 7 0 chr4 1637725 1638017 -200690330 + AluSx SINE Alu 1 294 -18 2448 79 20 0 chr4 1638017 1638321 -200690026 + AluY SINE Alu 1 311 0 1030 223 122 62 chr4 1638396 1638781 -200689566 + MLT2B1 LTR ERVL 7 414 0 501 278 57 20 chr4 1639077 1639322 -200689025 + L1ME3A LINE L1 2315 2568 -3578 402 172 247 21 chr4 1639348 1639441 -200688906 + FLAM_A SINE Alu 14 127 -6 724 283 141 21 chr4 1639441 1640059 -200688288 + L1ME3A LINE L1 2592 3283 -2863 1796 162 0 33 chr4 1640105 1640408 -200687939 + AluSx SINE Alu 13 305 -7 840 220 18 6 chr4 1640409 1640577 -200687770 + AluJo/FRAM SINE Alu 135 304 -8 684 296 52 17 chr4 1640590 1640935 -200687412 + L1ME3A LINE L1 3484 3840 -2306 719 179 64 0 chr4 1641010 1641166 -200687181 + L1MB8 LINE L1 5450 5615 -559 * 24912 132 25 20 chr4 1641158 1641526 -200686821 + L1PA8A LINE L1 862 1227 -5219 267 114 0 0 chr4 1641526 1641570 -200686777 + (CAA)n Simple_repeat Simple_repeat 2 45 0 24912 132 25 20 chr4 1641570 1643885 -200684462 + L1PA8A LINE L1 1227 3529 -2917 186 43 0 0 chr4 1643885 1643908 -200684439 + (TAA)n Simple_repeat Simple_repeat 2 24 0 24912 132 25 20 chr4 1643908 1645068 -200683279 + L1PA8A LINE L1 3529 4682 -1764 2479 77 0 0 chr4 1645068 1645367 -200682980 + AluSx SINE Alu 1 299 -13 2615 68 0 0 chr4 1645367 1645676 -200682671 + AluY SINE Alu 1 309 -2 24912 132 25 20 chr4 1645676 1647318 -200681029 + L1PA8A LINE L1 4682 6440 -6 2352 95 0 25 chr4 1647318 1647635 -200680712 + AluSc SINE Alu 1 309 0 1235 204 49 3 chr4 1647639 1647924 -200680423 + L1MB8 LINE L1 5860 6157 -21 * 1999 167 0 0 chr4 1647942 1648235 -200680112 - AluJb SINE Alu -19 293 1 2346 74 7 10 chr4 1648257 1648555 -200679792 - AluY SINE Alu -14 297 1 482 294 184 57 chr4 1648611 1648911 -200679436 + L1ME3A LINE L1 3975 4235 -1911 1773 113 0 4 chr4 1648911 1649176 -200679171 + AluSx SINE Alu 56 312 0 482 294 184 57 chr4 1649176 1649934 -200678413 + L1ME3A LINE L1 4235 5216 -930 1658 178 14 10 chr4 1649934 1650226 -200678121 + AluJo SINE Alu 1 293 -19 482 294 184 57 chr4 1650226 1650406 -200677941 + L1ME3A LINE L1 5216 5372 -774 665 168 0 0 chr4 1650408 1650515 -200677832 + AluSq/x SINE Alu 2 108 -205 883 167 20 0 chr4 1650515 1650665 -200677682 + AluJb SINE Alu 157 309 -3 256 268 138 65 chr4 1650684 1650975 -200677372 + L1ME3A LINE L1 5609 5920 -250 218 318 6 47 chr4 1651932 1652102 -200676245 + G-rich Low_complexity Low_complexity 5 167 0 233 267 151 0 chr4 1653123 1653209 -200675138 - MER63D DNA MER1_type -9 1053 955 565 171 23 31 chr4 1653234 1653363 -200674984 - FLAM_C SINE Alu -4 129 2 1005 228 53 42 chr4 1653507 1653814 -200674533 - MER63D DNA MER1_type -313 748 435 2382 60 3 17 chr4 1653814 1654116 -200674231 + AluSp SINE Alu 1 298 -15 1005 228 53 42 chr4 1654116 1654185 -200674162 - MER63D DNA MER1_type -626 435 368 482 178 22 0 chr4 1654243 1654333 -200674014 + L1MC/D LINE L1 5656 5747 -495 375 258 54 41 chr4 1654513 1654602 -200673745 + L1ME LINE L1 5258 5344 -826 1495 125 5 0 chr4 1654602 1654818 -200673529 + AluSg/x SINE Alu 84 300 -10 375 258 54 41 chr4 1654818 1654949 -200673398 + L1ME LINE L1 5344 5481 -689 1154 184 95 45 chr4 1655017 1655177 -200673170 - L1M4 LINE L1 -1318 4828 4678 2059 154 7 0 chr4 1655177 1655482 -200672865 - AluSx SINE Alu -5 307 1 1154 184 95 45 chr4 1655482 1655658 -200672689 - L1M4 LINE L1 -1468 4678 4475 1309 133 30 10 chr4 1655662 1655865 -200672482 + AluJo SINE Alu 14 220 -92 251 204 0 0 chr4 1655865 1655914 -200672433 + FLAM_A SINE Alu 85 133 0 880 249 58 19 chr4 1655922 1656231 -200672116 - L1M4 LINE L1 -1659 4487 4167 2325 90 0 3 chr4 1656260 1656548 -200671799 + AluSq SINE Alu 1 287 -26 1644 82 0 0 chr4 1656548 1656744 -200671603 + AluSq SINE Alu 79 274 -39 317 194 39 29 chr4 1656773 1656876 -200671471 - L1M4 LINE L1 -1494 4652 4549 1152 154 0 0 chr4 1656959 1657121 -200671226 - AluJb SINE Alu -17 295 134 1466 161 93 7 chr4 1657121 1657254 -200671093 - AluSx SINE Alu -8 304 184 1590 114 18 0 chr4 1657254 1657473 -200670874 - AluSx SINE Alu -89 223 1 1466 161 93 7 chr4 1657473 1657619 -200670728 - AluSx SINE Alu -128 184 1 1208 181 185 8 chr4 1657621 1657880 -200670467 - AluJo SINE Alu -7 305 1 535 366 103 6 chr4 1657899 1658238 -200670109 - L1M4 LINE L1 -1712 4434 4063 549 135 0 11 chr4 1658249 1658338 -200670009 - FLAM_A SINE Alu -16 126 39 262 325 32 37 chr4 1658405 1658651 -200669696 - L1M4 LINE L1 -2125 4021 3777 1276 204 78 20 chr4 1658651 1658999 -200669348 - MER96B DNA MER1_type? 0 417 50 317 221 70 12 chr4 1659032 1659118 -200669229 + MER96B DNA MER1_type? 327 417 0 330 314 26 39 chr4 1659124 1659239 -200669108 - L1M4 LINE L1 -2387 3759 3645 2381 76 0 13 chr4 1659239 1659540 -200668807 - AluY SINE Alu -14 297 1 330 314 26 39 chr4 1659540 1659580 -200668767 - L1M4 LINE L1 -2501 3645 3606 431 281 38 111 chr4 1659738 1659939 -200668408 - L1ME LINE L1 -5708 362 187 2206 125 0 0 chr4 1659939 1660228 -200668119 + AluSx SINE Alu 9 297 -15 431 281 38 111 chr4 1660228 1660314 -200668033 - L1ME LINE L1 -5883 187 96 774 236 38 64 chr4 1660366 1660381 -200667966 - L1M4 LINE L1 -2103 4043 4029 2399 84 0 3 chr4 1660381 1660690 -200667657 - AluY SINE Alu -3 308 1 774 236 38 64 chr4 1660690 1661017 -200667330 - L1M4 LINE L1 -2117 4029 3710 2360 106 0 6 chr4 1661197 1661508 -200666839 + AluSc SINE Alu 1 309 0 335 274 138 68 chr4 1661651 1661903 -200666444 + MER110 LTR ERV1 97 359 -109 1789 145 0 0 chr4 1661911 1662173 -200666174 + AluJo SINE Alu 34 295 -17 2785 29 0 3 chr4 1662837 1663149 -200665198 + AluY SINE Alu 1 311 0 583 229 8 0 chr4 1663286 1663417 -200664930 - FLAM_A SINE Alu -1 132 1 693 187 29 0 chr4 1663600 1663771 -200664576 + CT-rich Low_complexity Low_complexity 4 179 0 2363 84 17 0 chr4 1663807 1664149 -200664198 - AluY SINE Alu 0 347 1 2090 122 3 0 chr4 1664317 1664604 -200663743 - AluSx SINE Alu -14 298 11 346 161 18 0 chr4 1664621 1664677 -200663670 - L1MB7 LINE L1 0 6184 6128 1719 190 16 44 chr4 1664677 1664755 -200663592 + L1 LINE L1 4124 4203 -1943 4144 183 31 55 chr4 1664755 1665748 -200662599 + LTR5 LTR ERVK 1 969 0 1719 190 16 44 chr4 1665748 1665874 -200662473 + L1 LINE L1 4203 4331 -1815 2039 95 95 0 chr4 1665874 1666147 -200662200 - AluSc SINE Alu -10 299 1 1719 190 16 44 chr4 1666147 1666393 -200661954 + L1 LINE L1 4331 4562 -1584 305 211 0 0 chr4 1666394 1666451 -200661896 + AluS SINE Alu 1 57 -243 1799 204 19 12 chr4 1666451 1666873 -200661474 + L1P LINE L1 4852 5276 -870 10241 125 8 30 chr4 1666873 1668521 -200659826 - PRIMA41-int LTR ERV1 -179 6497 4886 1557 165 4 0 chr4 1668521 1668770 -200659577 + MER52A LTR ERV1 1506 1755 0 6887 135 26 16 chr4 1668781 1669919 -200658428 - THE1-int LTR MaLR 0 1580 431 13571 122 12 10 chr4 1669919 1672578 -200655769 - L1PA10 LINE L1 0 6483 3809 2320 100 0 0 chr4 1672578 1672868 -200655479 - AluSq SINE Alu -23 290 1 13571 122 12 10 chr4 1672868 1673270 -200655077 - L1PA10 LINE L1 -2674 3809 3410 1203 112 0 0 chr4 1673272 1673451 -200654896 + L1P LINE L1 4411 4589 -1557 * 10885 184 10 44 chr4 1673448 1674078 -200654269 - L1PA10 LINE L1 -3051 3410 2760 2324 89 0 4 chr4 1674078 1674402 -200653945 + AluSc SINE Alu 2 324 0 10885 184 10 44 chr4 1674402 1675045 -200653302 - L1PA10 LINE L1 -3701 2760 2097 2262 106 0 20 chr4 1675045 1675348 -200652999 - AluSg SINE Alu -13 297 1 10885 184 10 44 chr4 1675348 1675376 -200652971 - L1PA10 LINE L1 -4364 2097 2070 1407 103 198 12 chr4 1675376 1675628 -200652719 + AluSc SINE Alu 1 299 0 10885 184 10 44 chr4 1675628 1676546 -200651801 - L1PA10 LINE L1 -4391 2070 1303 2424 77 10 19 chr4 1676546 1676859 -200651488 - AluSg SINE Alu 0 310 1 10885 184 10 44 chr4 1676859 1677453 -200650894 - L1PA10 LINE L1 -5158 1303 690 1473 151 0 18 chr4 1677482 1677700 -200650647 - AluSg SINE Alu -96 214 1 2299 316 45 73 chr4 1677814 1678758 -200649589 - PRIMA41-int LTR ERV1 -2753 5003 4125 2684 55 0 0 chr4 1678758 1679067 -200649280 - AluY SINE Alu -2 309 1 2299 316 45 73 chr4 1679067 1679778 -200648569 - PRIMA41-int LTR ERV1 -3631 4125 3395 448 335 50 19 chr4 1679931 1680250 -200648097 + ERVL LTR ERVL 3656 3984 -1780 1585 138 161 15 chr4 1680343 1680684 -200647663 + MSTA LTR MaLR 1 391 -37 652 164 9 0 chr4 1680685 1680801 -200647546 - FLAM_C SINE Alu -16 117 1 334 222 56 32 chr4 1680801 1680927 -200647420 + L1M4 LINE L1 2869 2997 -3149 709 183 89 0 chr4 1680980 1681193 -200647154 + LOR1-int LTR ERV1 2275 2506 -2365 257 294 61 66 chr4 1681352 1681645 -200646702 - L1M4 LINE L1 -3136 3010 2717 396 0 0 0 chr4 1681645 1681689 -200646658 + (TA)n Simple_repeat Simple_repeat 1 44 0 1591 170 71 32 chr4 1681698 1681980 -200646367 - AluJo SINE Alu -19 293 1 257 294 61 66 chr4 1681980 1682234 -200646113 - L1M4 LINE L1 -3437 2709 2456 712 194 55 103 chr4 1682509 1682535 -200645812 + LOR1-int LTR ERV1 1522 1548 -6572 2329 120 0 0 chr4 1682535 1682843 -200645504 + AluSx SINE Alu 1 308 -4 712 194 55 103 chr4 1682843 1682956 -200645391 + LOR1-int LTR ERV1 1548 1665 -6455 2095 116 3 20 chr4 1682956 1683250 -200645097 + AluSx SINE Alu 1 289 -23 712 194 55 103 chr4 1683250 1683507 -200644840 + LOR1-int LTR ERV1 1665 1900 -6220 2194 80 0 0 chr4 1683522 1683785 -200644562 - AluSx SINE Alu -24 288 26 30 0 0 0 chr4 1685679 1685709 -200642638 + GC_rich Low_complexity Low_complexity 1 30 0 216 97 0 0 chr4 1685791 1685822 -200642525 + (CTG)n Simple_repeat Simple_repeat 1 31 0 24 32 0 0 chr4 1685836 1685867 -200642480 + GC_rich Low_complexity Low_complexity 1 31 0 252 231 77 0 chr4 1688360 1688438 -200639909 - MLT1J LTR MaLR -336 175 92 231 238 125 0 chr4 1688487 1688567 -200639780 - MER53 DNA DNA -75 114 25 191 281 47 0 chr4 1688852 1688916 -200639431 - L2 LINE L2 -741 2573 2507 816 172 0 0 chr4 1689749 1689883 -200638464 - AluJb SINE Alu -21 291 158 273 247 34 22 chr4 1690401 1690490 -200637857 + (CCCCG)n Simple_repeat Simple_repeat 1 90 0 224 150 0 0 chr4 1690944 1690984 -200637363 + MIR SINE MIR 105 144 -118 448 222 0 10 chr4 1691952 1692051 -200636296 + LTR23 LTR ERV1 340 437 0 1984 158 0 0 chr4 1692452 1692784 -200635563 + AluSx SINE Alu 1 332 0 1719 162 43 23 chr4 1693221 1693524 -200634823 - AluJb SINE Alu -3 309 1 561 124 21 31 chr4 1693759 1693856 -200634491 + LTR23-int LTR ERV1 1557 1652 -4679 1246 148 9 43 chr4 1693856 1694066 -200634281 + AluJo SINE Alu 86 288 -24 369 0 0 0 chr4 1694079 1694120 -200634227 + (CA)n Simple_repeat Simple_repeat 2 42 0 552 183 0 26 chr4 1694141 1694256 -200634091 - FLAM_C SINE Alu 0 143 32 3950 196 35 40 chr4 1694260 1695178 -200633169 + LTR23-int LTR ERV1 1675 2587 -3744 433 235 170 46 chr4 1695218 1695371 -200632976 + MER34C LTR ERV1 160 331 -254 2501 55 3 0 chr4 1695371 1695662 -200632685 + AluSp SINE Alu 1 292 -21 1377 143 40 48 chr4 1695698 1695949 -200632398 - AluJo SINE Alu -4 308 60 529 205 0 46 chr4 1695955 1696154 -200632193 + LTR23-int LTR ERV1 1098 1180 -3691 * 1320 243 35 62 chr4 1696142 1696645 -200631702 + LTR23-int LTR ERV1 1296 1784 -3339 2547 84 3 0 chr4 1696645 1696955 -200631392 + AluSp SINE Alu 1 311 -2 1320 243 35 62 chr4 1696955 1697015 -200631332 + LTR23-int LTR ERV1 1784 1844 -3279 2562 70 0 0 chr4 1697024 1697325 -200631022 - AluY SINE Alu -9 302 2 818 184 0 0 chr4 1697329 1697454 -200630893 - FRAM SINE Alu -16 160 36 280 75 43 129 chr4 1697470 1697548 -200630799 + LTR23-int LTR ERV1 1836 1906 -3217 1752 131 141 21 chr4 1697548 1697930 -200630417 - MSTA LTR MaLR 0 428 1 280 75 43 129 chr4 1697930 1697944 -200630403 + LTR23-int LTR ERV1 1906 1920 -3203 2584 69 0 0 chr4 1697945 1698251 -200630096 - AluSc SINE Alu -3 306 1 667 194 37 118 chr4 1698342 1698428 -200629919 + LTR23-int LTR ERV1 1925 2016 -3651 2404 76 17 3 chr4 1698428 1698730 -200629617 + AluY SINE Alu 1 306 -5 667 194 37 118 chr4 1698730 1698826 -200629521 + LTR23-int LTR ERV1 2016 2118 -3549 1692 156 0 4 chr4 1698826 1699082 -200629265 + AluJb SINE Alu 34 288 -24 667 194 37 118 chr4 1699082 1699301 -200629046 + LTR23-int LTR ERV1 2118 3710 -1957 2418 84 7 0 chr4 1699352 1699651 -200628696 + AluSp SINE Alu 1 301 -12 831 130 0 36 chr4 1699660 1699798 -200628549 + FLAM_C SINE Alu 1 133 0 2338 101 7 0 chr4 1700464 1700770 -200627577 - AluSx SINE Alu -4 308 1 1397 161 103 58 chr4 1701090 1701506 -200626841 + LTR23 LTR ERV1 1 435 -2 32 0 0 0 chr4 1702012 1702044 -200626303 + GC_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr4 1702171 1702206 -200626141 + GC_rich Low_complexity Low_complexity 1 35 0 402 274 0 0 chr4 1702518 1702613 -200625734 + T-rich Low_complexity Low_complexity 1 95 0 21 0 0 0 chr4 1703475 1703496 -200624851 + AT_rich Low_complexity Low_complexity 1 21 0 407 251 9 68 chr4 1705778 1705997 -200622350 + AluYa5 SINE Alu 98 303 -8 61 68 0 0 chr4 1708953 1709070 -200619277 + GC_rich Low_complexity Low_complexity 1 117 0 21 110 0 0 chr4 1709220 1709311 -200619036 + GC_rich Low_complexity Low_complexity 1 91 0 265 234 4 32 chr4 1709735 1709815 -200618532 - MIR SINE MIR -61 147 69 213 182 0 0 chr4 1709941 1709974 -200618373 + C-rich Low_complexity Low_complexity 1 33 0 182 276 52 17 chr4 1711585 1711643 -200616704 - MIR SINE MIR -67 141 82 183 269 104 0 chr4 1711992 1712059 -200616288 - L2 LINE L2 -52 3261 3188 237 98 16 49 chr4 1713457 1713518 -200614829 + (CCCG)n Simple_repeat Simple_repeat 1 59 0 204 182 0 0 chr4 1717421 1717465 -200610882 + (TG)n Simple_repeat Simple_repeat 1 44 0 386 385 0 22 chr4 1717489 1717671 -200610676 + (CGTG)n Simple_repeat Simple_repeat 2 179 0 * 517 344 6 6 chr4 1717567 1717747 -200610600 + (TG)n Simple_repeat Simple_repeat 1 180 0 414 320 11 17 chr4 1717821 1718002 -200610345 + (TG)n Simple_repeat Simple_repeat 1 180 0 269 333 11 0 chr4 1720486 1720576 -200607771 + MIR SINE MIR 105 195 -67 202 320 13 0 chr4 1721713 1721791 -200606556 + (CA)n Simple_repeat Simple_repeat 1 79 0 534 173 39 47 chr4 1727783 1727910 -200600437 - AluSg/x SINE Alu -2 310 185 1739 131 34 37 chr4 1728254 1728551 -200599796 - AluJb SINE Alu -16 296 1 206 278 10 0 chr4 1728757 1728854 -200599493 + (TG)n Simple_repeat Simple_repeat 2 99 0 2187 104 7 0 chr4 1728907 1729205 -200599142 - AluSx SINE Alu -12 300 1 2074 121 3 3 chr4 1731563 1731870 -200596477 - AluSx SINE Alu -5 307 1 328 169 28 0 chr4 1732072 1732143 -200596204 - MER69 DNA AcHobo -3 2523 2451 * 414 248 88 9 chr4 1732142 1732255 -200596092 - MER69 DNA AcHobo -1854 672 551 1129 330 67 16 chr4 1732383 1733147 -200595200 - L1MEc LINE L1 -5557 839 37 853 297 147 5 chr4 1733147 1733568 -200594779 - MER69 DNA AcHobo -1982 544 64 200 321 47 28 chr4 1734017 1734123 -200594224 + L2 LINE L2 3120 3227 -86 865 310 81 52 chr4 1734468 1734948 -200593399 - L1ME LINE L1 -2976 3668 3175 184 274 274 0 chr4 1735542 1735644 -200592703 - L2 LINE L2 0 3272 3143 755 160 0 76 chr4 1735806 1735950 -200592397 + FLAM_C SINE Alu 1 133 0 290 300 75 59 chr4 1735965 1736207 -200592140 + MIR SINE MIR 8 256 -6 1083 215 63 11 chr4 1737086 1737449 -200590898 - L1ME LINE L1 -5133 1501 1120 909 175 38 6 chr4 1737450 1737610 -200590737 - AluJo SINE Alu -14 298 134 1584 261 44 25 chr4 1740324 1740849 -200587498 - L1ME LINE L1 -5525 1109 575 324 0 0 0 chr4 1741377 1741413 -200586934 + (TG)n Simple_repeat Simple_repeat 1 36 0 299 295 48 0 chr4 1743057 1743162 -200585185 - MIR SINE MIR -120 142 33 775 212 126 15 chr4 1743614 1743682 -200584665 + MLT1E LTR MaLR 253 312 -281 2095 104 12 61 chr4 1743682 1744010 -200584337 + AluSx SINE Alu 1 312 0 775 212 126 15 chr4 1744010 1744212 -200584135 + MLT1E LTR MaLR 312 592 -1 241 287 96 0 chr4 1744213 1744349 -200583998 - L2 LINE L2 -255 3058 2910 230 318 0 0 chr4 1744822 1744885 -200583462 + GA-rich Low_complexity Low_complexity 5 67 0 441 110 0 0 chr4 1746308 1746381 -200581966 + (GA)n Simple_repeat Simple_repeat 1 73 0 1270 284 88 49 chr4 1746419 1746982 -200581365 - L1M4 LINE L1 -5758 784 244 2191 99 3 0 chr4 1746982 1747274 -200581073 - AluSg SINE Alu -17 293 1 1270 284 88 49 chr4 1747274 1747298 -200581049 - L1M4 LINE L1 -6298 244 222 713 172 8 45 chr4 1747298 1747432 -200580915 - AluJo SINE Alu -169 133 5 1270 284 88 49 chr4 1747432 1747594 -200580753 - L1M4 LINE L1 -6320 222 5 1837 143 3 21 chr4 1747758 1748044 -200580303 + AluJb SINE Alu 1 281 -31 22 0 0 0 chr4 1748079 1748101 -200580246 + AT_rich Low_complexity Low_complexity 1 22 0 5924 182 20 18 chr4 1748160 1748545 -200579802 + L1MC3 LINE L1 6488 6871 -914 225 0 0 0 chr4 1748545 1748570 -200579777 + (CA)n Simple_repeat Simple_repeat 1 25 0 5924 182 20 18 chr4 1748570 1749478 -200578869 + L1MC3 LINE L1 6871 7784 -1 1584 126 4 8 chr4 1749485 1749723 -200578624 + AluJb SINE Alu 76 312 0 664 363 134 25 chr4 1749895 1750589 -200577758 + L1M4 LINE L1 4258 5027 -1119 355 406 19 14 chr4 1750672 1750884 -200577463 + L1M4 LINE L1 4917 5129 -1017 9382 223 25 61 chr4 1750894 1753857 -200574490 + L1M2 LINE L1 10 2867 -3982 1484 153 43 0 chr4 1753859 1754141 -200574206 - L1M4 LINE L1 -368 5816 5523 310 323 264 0 chr4 1754637 1754990 -200573357 + L2 LINE L2 2239 2684 -630 353 232 143 0 chr4 1755035 1755147 -200573200 + HAL1 LINE L1 5 132 -2375 474 18 0 0 chr4 1755428 1755483 -200572864 + (ATG)n Simple_repeat Simple_repeat 2 56 0 264 322 0 33 chr4 1755503 1755593 -200572754 + L2 LINE L2 1868 1954 -1360 829 316 58 69 chr4 1756279 1756886 -200571461 - L1M4 LINE L1 -1254 5687 5088 212 320 190 28 chr4 1757090 1757343 -200571004 - L2 LINE L2 -562 2752 2459 180 353 47 0 chr4 1757382 1757467 -200570880 - L2 LINE L2 -967 2347 2259 191 281 90 42 chr4 1757599 1757766 -200570581 + L2 LINE L2 2909 3083 -189 411 290 104 35 chr4 1757848 1758079 -200570268 + MIR SINE MIR 16 262 0 2527 256 75 60 chr4 1759123 1759622 -200568725 - L1MCc LINE L1 -3614 3327 2837 22581 24 0 0 chr4 1759622 1763017 -200565330 + L1PA4 LINE L1 2746 6147 -8 2527 256 75 60 chr4 1763017 1763201 -200565146 - L1MCc LINE L1 -4104 2837 2657 2072 131 3 0 chr4 1763201 1763523 -200564824 + AluSx SINE Alu 1 323 0 1848 172 3 0 chr4 1763526 1763817 -200564530 - AluJb SINE Alu -20 292 1 2527 256 75 60 chr4 1763817 1764668 -200563679 - L1MCc LINE L1 -4285 2656 1581 1970 130 3 10 chr4 1764668 1764827 -200563520 - AluSx SINE Alu -14 298 140 189 0 0 0 chr4 1764827 1764848 -200563499 + (TA)n Simple_repeat Simple_repeat 1 21 0 1970 130 3 10 chr4 1764848 1764988 -200563359 - AluSx SINE Alu -172 140 1 2527 256 75 60 chr4 1764988 1765449 -200562898 - L1MCc LINE L1 -5360 1581 1129 674 283 106 30 chr4 1765748 1766144 -200562203 - L1MCc LINE L1 -5975 448 23 1056 278 50 9 chr4 1766637 1766954 -200561393 - MLT1I LTR MaLR -53 356 27 832 298 106 6 chr4 1768345 1768657 -200559690 - MLT1I LTR MaLR -7 402 60 331 221 0 0 chr4 1768706 1768774 -200559573 - L1M4 LINE L1 -1886 4260 4193 213 175 0 0 chr4 1769020 1769060 -200559287 + (TG)n Simple_repeat Simple_repeat 1 40 0 2547 223 73 44 chr4 1769659 1770122 -200558225 - L1M4 LINE L1 -1276 4870 4371 2307 105 0 3 chr4 1770122 1770417 -200557930 - AluSx SINE Alu -18 294 1 2547 223 73 44 chr4 1770417 1770775 -200557572 - L1M4 LINE L1 -1775 4371 4025 2267 112 0 0 chr4 1770775 1771070 -200557277 + AluSx SINE Alu 1 295 -17 180 0 0 0 chr4 1771070 1771090 -200557257 + (TA)n Simple_repeat Simple_repeat 2 21 0 1791 215 68 10 chr4 1771091 1771608 -200556739 - L1M4 LINE L1 -2605 3541 2995 2331 206 44 125 chr4 1772092 1772327 -200556020 + L1ME1 LINE L1 5372 5624 -542 433 133 13 0 chr4 1772327 1772398 -200555949 + L1MB2 LINE L1 6096 6171 0 2331 206 44 125 chr4 1772398 1772494 -200555853 + L1ME1 LINE L1 5624 5726 -440 1479 174 0 50 chr4 1772494 1772792 -200555555 + AluJo SINE Alu 1 283 -29 315 0 0 0 chr4 1772793 1772828 -200555519 + (CAAAC)n Simple_repeat Simple_repeat 2 36 0 1781 167 3 30 chr4 1772830 1772967 -200555380 + AluSx SINE Alu 1 140 -172 2295 113 6 3 chr4 1772967 1773278 -200555069 + AluSx SINE Alu 1 312 0 1781 167 3 30 chr4 1773278 1773439 -200554908 + AluSx SINE Alu 140 291 -21 2331 206 44 125 chr4 1773439 1773905 -200554442 + L1ME1 LINE L1 5727 6104 -62 1549 147 33 50 chr4 1773905 1774204 -200554143 - AluJo SINE Alu -18 294 1 2331 206 44 125 chr4 1774204 1774255 -200554092 + L1ME1 LINE L1 6104 6158 -8 378 204 58 0 chr4 1774777 1774880 -200553467 + MER91C DNA MER1_type 2 110 -30 301 135 0 104 chr4 1776177 1776273 -200552074 + (GGAGA)n Simple_repeat Simple_repeat 2 87 0 2274 114 0 7 chr4 1778399 1778706 -200549641 + AluSx SINE Alu 1 305 -7 28 22 0 22 chr4 1779006 1779028 -200549319 + AT_rich Low_complexity Low_complexity 1 22 -23 1879 163 0 7 chr4 1779028 1779317 -200549030 - AluJo SINE Alu -25 287 1 28 22 0 22 chr4 1779317 1779340 -200549007 + AT_rich Low_complexity Low_complexity 22 45 0 1977 119 32 3 chr4 1779599 1779884 -200548463 + AluSx SINE Alu 1 293 -19 456 104 0 0 chr4 1779889 1779956 -200548391 + (GGGGA)n Simple_repeat Simple_repeat 4 70 0 1830 159 0 28 chr4 1780526 1780816 -200547531 + AluJb SINE Alu 5 286 -26 1887 266 68 27 chr4 1781814 1782567 -200545780 + L1ME LINE L1 874 1644 -4436 633 149 57 71 chr4 1782652 1782793 -200545554 + FLAM_C SINE Alu 2 140 -3 2663 144 7 2 chr4 1782793 1783217 -200545130 + L1MA5 LINE L1 5490 5915 -385 * 5026 168 33 47 chr4 1783213 1784226 -200544121 - L1MC3 LINE L1 -1362 6423 5426 191 298 97 0 chr4 1786658 1786772 -200541575 + L2 LINE L2 3146 3270 -2 407 290 61 0 chr4 1786785 1786916 -200541431 - MIR SINE MIR -76 186 48 2132 119 0 0 chr4 1787489 1787766 -200540581 - AluSg SINE Alu -33 277 1 231 143 71 0 chr4 1787808 1787850 -200540497 + L2 LINE L2 3226 3270 -2 185 303 49 57 chr4 1787858 1787980 -200540367 - L2 LINE L2 -457 2857 2737 1922 128 33 4 chr4 1788248 1788551 -200539796 + AluSx SINE Alu 1 311 0 309 230 81 0 chr4 1789034 1789108 -200539239 - MER112 DNA MER1_type -58 202 123 2059 114 4 4 chr4 1789695 1790005 -200538342 - AluSg SINE Alu 0 310 1 2003 161 0 3 chr4 1790093 1790391 -200537956 + AluSx SINE Alu 1 297 -15 296 310 9 17 chr4 1790744 1790860 -200537487 + MLT1K LTR MaLR 458 572 -16 1514 170 135 50 chr4 1792062 1792291 -200536056 + L1ME3A LINE L1 15 290 -6250 217 47 47 23 chr4 1792291 1792334 -200536013 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1514 170 135 50 chr4 1792334 1792481 -200535866 + L1ME3A LINE L1 290 423 -6117 545 220 8 8 chr4 1792501 1792619 -200535728 + MER31B LTR ERV1 273 390 -76 281 230 68 0 chr4 1792591 1792665 -200535682 + MER67D LTR ERV1 432 510 -4 * 2204 256 90 4 chr4 1792669 1793434 -200534913 + L1ME3A LINE L1 3342 4172 -2368 699 176 29 0 chr4 1793437 1793573 -200534774 + L1MC/D LINE L1 5616 5755 -487 24 53 0 0 chr4 1793647 1793685 -200534662 + AT_rich Low_complexity Low_complexity 1 38 0 2304 118 0 0 chr4 1793760 1794066 -200534281 - AluSg SINE Alu -4 306 1 27 0 0 0 chr4 1794187 1794214 -200534133 + AT_rich Low_complexity Low_complexity 1 27 0 1028 272 98 55 chr4 1794563 1795673 -200532674 + L1ME3A LINE L1 5176 6341 -223 33 25 0 0 chr4 1795697 1795737 -200532610 + AT_rich Low_complexity Low_complexity 1 40 0 2228 95 14 3 chr4 1795848 1796144 -200532203 + AluSq SINE Alu 1 299 -14 2443 98 0 0 chr4 1797256 1797561 -200530786 - AluSp SINE Alu -8 305 1 385 336 38 0 chr4 1797567 1797698 -200530649 - L2 LINE L2 -5 3267 3132 1016 231 92 129 chr4 1797803 1798005 -200530342 + L1ME1 LINE L1 1437 1645 -5076 2270 88 3 20 chr4 1798005 1798300 -200530047 + AluSg SINE Alu 1 290 -20 1016 231 92 129 chr4 1798300 1798651 -200529696 + L1ME1 LINE L1 1645 1957 -4764 1844 142 0 21 chr4 1798651 1798964 -200529383 + AluJb SINE Alu 24 312 0 1016 231 92 129 chr4 1798964 1799163 -200529184 + L1ME1 LINE L1 1957 2162 -4559 286 119 24 0 chr4 1799168 1799210 -200529137 - FLAM_A SINE Alu -32 101 59 1083 194 5 23 chr4 1799215 1799414 -200528933 + AluJo SINE Alu 99 295 -17 2409 90 0 3 chr4 1799414 1799725 -200528622 + AluSg SINE Alu 1 310 0 1083 194 5 23 chr4 1799725 1799742 -200528605 + AluJo SINE Alu 295 311 -1 343 152 133 48 chr4 1799752 1799857 -200528490 + L1ME1 LINE L1 2629 2742 -3798 301 276 0 0 chr4 1799924 1800011 -200528336 + L1ME1 LINE L1 2728 2814 -3726 * 2824 249 35 32 chr4 1799998 1801481 -200526866 + L1ME1 LINE L1 4942 6425 -135 1856 177 3 19 chr4 1801633 1801950 -200526397 - AluSx SINE Alu 0 312 1 1162 132 93 39 chr4 1801953 1802157 -200526190 - AluJo SINE Alu -11 301 87 282 302 52 85 chr4 1802454 1802702 -200525645 + L1MC/D LINE L1 5507 5746 -2062 310 250 49 32 chr4 1803035 1803200 -200525147 + HAL1b LINE L1 1191 1340 -8 2254 92 3 7 chr4 1803200 1803495 -200524852 - AluY SINE Alu -17 294 1 2565 58 7 3 chr4 1803527 1803835 -200524512 + AluY SINE Alu 1 309 -2 544 237 189 29 chr4 1803872 1804318 -200524029 + L1ME LINE L1 5191 5721 -400 293 173 214 0 chr4 1804354 1804464 -200523883 + L1MC/D LINE L1 5687 5819 -401 25 31 0 0 chr4 1805324 1805356 -200522991 + AT_rich Low_complexity Low_complexity 1 32 0 2223 84 14 0 chr4 1805456 1805743 -200522604 - AluY SINE Alu -20 291 1 248 219 115 31 chr4 1806795 1806891 -200521456 + MIR SINE MIR 63 166 -96 2226 102 10 3 chr4 1807052 1807356 -200520991 + AluSg SINE Alu 1 306 -4 358 125 0 47 chr4 1807562 1807626 -200520721 - AluS SINE Alu -9 291 231 2143 116 0 10 chr4 1807564 1807858 -200520489 - AluSx SINE Alu -21 291 1 234 147 162 59 chr4 1807952 1808020 -200520327 - MER113 DNA MER1_type? -46 475 401 272 220 55 11 chr4 1808020 1808111 -200520236 - L1MC3 LINE L1 -7 7778 7684 1342 289 94 15 chr4 1809195 1810008 -200518339 - L1ME3A LINE L1 -17 6153 5179 1811 156 3 26 chr4 1810008 1810316 -200518031 - AluJo SINE Alu -11 301 1 1342 289 94 15 chr4 1810316 1810559 -200517788 - L1ME3A LINE L1 -991 5179 4957 328 138 79 0 chr4 1810641 1810704 -200517643 - AluJb SINE Alu -7 295 238 4429 116 114 129 chr4 1810709 1812120 -200516227 + pTR5 LTR ERV1 757 2438 0 1718 131 0 0 chr4 1812128 1812364 -200515983 - AluJb SINE Alu -76 236 1 481 285 0 121 chr4 1812406 1812711 -200515636 - L1ME3A LINE L1 -1316 4830 4563 243 296 45 15 chr4 1813225 1813357 -200514990 - MER5B DNA MER1_type -2 176 41 516 344 100 32 chr4 1813404 1813826 -200514521 + L2 LINE L2 2223 2615 -699 2276 110 3 0 chr4 1813826 1814127 -200514220 + AluSp SINE Alu 1 302 -11 2438 109 0 0 chr4 1814127 1814439 -200513908 + AluSx SINE Alu 1 312 0 516 344 100 32 chr4 1814439 1814470 -200513877 + L2 LINE L2 2615 2642 -672 5075 131 14 74 chr4 1814470 1815386 -200512961 + L1MC1 LINE L1 5452 6312 -21 1888 171 0 0 chr4 1815386 1815679 -200512668 - AluJo SINE Alu -19 293 1 5075 131 14 74 chr4 1815679 1815700 -200512647 + L1MC1 LINE L1 6312 6333 0 516 344 100 32 chr4 1815700 1815863 -200512484 + L2 LINE L2 2642 2883 -431 2642 188 47 55 chr4 1816048 1816597 -200511750 + MLT2B3 LTR ERVL 1 545 -9 425 207 38 110 chr4 1817156 1817219 -200511128 + L1M4 LINE L1 2760 2826 -3320 2187 124 0 0 chr4 1817219 1817510 -200510837 + AluSq SINE Alu 1 291 -22 425 207 38 110 chr4 1817510 1817683 -200510664 + L1M4 LINE L1 2826 2979 -3167 317 217 66 9 chr4 1817689 1817795 -200510552 - L2 LINE L2 -19 3294 3183 219 294 166 30 chr4 1818710 1818975 -200509372 - L2 LINE L2 -399 2915 2615 367 277 0 0 chr4 1819189 1819283 -200509064 - MIR SINE MIR -69 193 100 1630 181 7 24 chr4 1820877 1821170 -200507177 + AluJo SINE Alu 5 292 -20 938 141 0 0 chr4 1821259 1821401 -200506946 + FLAM_C SINE Alu 1 142 -1 321 250 151 12 chr4 1821585 1821757 -200506590 + L1ME LINE L1 5254 5449 -713 207 0 0 0 chr4 1821825 1821848 -200506499 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 450 325 95 11 chr4 1822187 1822571 -200505776 + L1ME LINE L1 5402 5816 -354 430 232 10 0 chr4 1822895 1822994 -200505353 - L1MA4A LINE L1 -21 6282 6183 660 188 11 40 chr4 1822995 1823171 -200505176 - L1MA4A LINE L1 -183 6120 5950 2137 130 0 3 chr4 1824424 1824723 -200503624 - AluSx SINE Alu -14 298 1 304 307 70 42 chr4 1824979 1825220 -200503127 - L1M4 LINE L1 -1443 4703 4456 198 304 104 26 chr4 1826178 1826293 -200502054 - MIR SINE MIR -111 151 28 344 147 0 93 chr4 1827212 1827287 -200501060 + MIR SINE MIR 86 153 -109 311 206 62 89 chr4 1827536 1827682 -200500665 + LTR67 LTR ERVL 416 557 0 2151 141 0 0 chr4 1828214 1828511 -200499836 - AluSx SINE Alu -15 297 1 2307 115 0 3 chr4 1830732 1831045 -200497302 - AluSx SINE Alu 0 312 1 21 0 0 0 chr4 1831056 1831077 -200497270 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4 1831099 1831119 -200497228 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2305 75 0 69 chr4 1831296 1831614 -200496733 + AluY SINE Alu 1 296 -15 4240 174 76 32 chr4 1831641 1831783 -200496564 + L1MB7 LINE L1 4752 4886 -1298 1700 202 64 36 chr4 1831783 1832233 -200496114 + MLT1C LTR MaLR 5 467 0 4240 174 76 32 chr4 1832233 1833444 -200494903 + L1MB7 LINE L1 4886 6179 -5 1949 112 101 0 chr4 1833477 1833753 -200494594 - AluSx SINE Alu -8 304 1 350 279 51 35 chr4 1833868 1834065 -200494282 + HAL1b LINE L1 340 539 -809 2893 207 70 60 chr4 1834095 1835063 -200493284 + L1MC5 LINE L1 6530 7527 -434 2348 104 3 3 chr4 1835063 1835372 -200492975 + AluSx SINE Alu 1 309 -3 2893 207 70 60 chr4 1835372 1835507 -200492840 + L1MC5 LINE L1 7527 7659 -302 7064 176 54 49 chr4 1835521 1836830 -200491517 + L1MA4 LINE L1 14 1314 -5014 2122 125 0 0 chr4 1836830 1837143 -200491204 - AluSx SINE Alu 0 313 1 7064 176 54 49 chr4 1837143 1837429 -200490918 + L1MA4 LINE L1 1314 1597 -4731 1761 164 0 18 chr4 1837429 1837715 -200490632 + AluJo SINE Alu 2 282 -30 7064 176 54 49 chr4 1837715 1837918 -200490429 + L1MA4 LINE L1 1597 1797 -4531 2447 63 0 7 chr4 1837918 1838265 -200490082 + AluY SINE Alu 1 311 0 7064 176 54 49 chr4 1838265 1838937 -200489410 + L1MA4 LINE L1 1797 2479 -3849 5902 131 55 25 chr4 1838921 1838957 -200489390 + L1MA4 LINE L1 4712 4745 -1737 * 2549 69 0 0 chr4 1838957 1839261 -200489086 + AluY SINE Alu 1 304 -7 5902 131 55 25 chr4 1839261 1839348 -200488999 + L1MA4 LINE L1 4745 4828 -1654 2322 94 13 0 chr4 1839348 1839646 -200488701 + AluSc SINE Alu 1 302 -7 5902 131 55 25 chr4 1839646 1841235 -200487112 + L1MA4 LINE L1 4828 6475 -7 418 138 49 183 chr4 1841258 1841466 -200486881 + L1MC5 LINE L1 7645 7817 -144 2050 93 0 7 chr4 1841466 1841735 -200486612 + AluSg SINE Alu 35 301 -9 418 138 49 183 chr4 1841735 1841772 -200486575 + L1MC5 LINE L1 7817 7857 -104 2116 102 39 0 chr4 1841952 1842237 -200486110 - AluSg SINE Alu -14 296 1 27 61 0 15 chr4 1842260 1842285 -200486062 + AT_rich Low_complexity Low_complexity 1 25 -40 851 146 0 0 chr4 1842285 1842415 -200485932 + AluJ SINE Alu 1 130 -172 27 61 0 15 chr4 1842415 1842455 -200485892 + AT_rich Low_complexity Low_complexity 25 65 0 391 257 0 26 chr4 1843030 1843143 -200485204 - MIR SINE MIR -82 180 71 562 317 23 58 chr4 1843590 1843849 -200484498 - MIR SINE MIR -1 261 12 905 131 0 91 chr4 1844332 1844508 -200483839 + AluJ SINE Alu 132 291 -21 225 214 0 0 chr4 1844509 1844565 -200483782 - L1MC4 LINE L1 -1339 6703 6648 248 254 56 14 chr4 1844893 1844964 -200483383 - L2 LINE L2 -8 3305 3232 1632 158 4 36 chr4 1845061 1845339 -200483008 - AluJo SINE Alu 0 312 44 407 207 47 64 chr4 1845390 1845556 -200482791 + L1MC4 LINE L1 7084 7247 -740 723 123 66 0 chr4 1845742 1845864 -200482483 - MER53 DNA DNA -59 130 1 298 267 62 27 chr4 1845893 1846039 -200482308 + L1MC5 LINE L1 7268 7418 -543 229 243 43 14 chr4 1846065 1846135 -200482212 + L1MC4 LINE L1 7586 7657 -385 192 288 125 11 chr4 1846447 1846631 -200481716 - L2 LINE L2 -297 3016 2812 257 91 0 0 chr4 1846678 1846711 -200481636 - U2 snRNA snRNA -152 36 4 1204 285 66 2 chr4 1846720 1847173 -200481174 - L2 LINE L2 -537 2777 2296 1520 236 39 16 chr4 1848505 1848996 -200479351 + L1M4 LINE L1 4108 4609 -1537 2051 126 10 10 chr4 1849175 1849476 -200478871 - AluSx SINE Alu -11 301 1 1321 170 54 35 chr4 1849572 1849889 -200478458 + L1M4 LINE L1 4440 4762 -1384 940 202 21 0 chr4 1849906 1850094 -200478253 + L1PB1 LINE L1 6 197 -6666 * 14974 189 23 17 chr4 1850091 1850585 -200477762 + L1PB1 LINE L1 1392 1882 -4985 2332 88 0 38 chr4 1850585 1850904 -200477443 + AluSc SINE Alu 1 307 -2 14974 189 23 17 chr4 1850904 1851719 -200476628 + L1PB1 LINE L1 1882 2691 -4176 194 0 39 0 chr4 1851719 1851745 -200476602 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 14974 189 23 17 chr4 1851745 1852055 -200476292 + L1PB1 LINE L1 2691 2998 -3869 2270 114 0 0 chr4 1852055 1852354 -200475993 + AluSx SINE Alu 14 312 0 14974 189 23 17 chr4 1852354 1852900 -200475447 + L1PB1 LINE L1 2998 3539 -3328 2235 115 0 3 chr4 1852900 1853196 -200475151 + AluSc SINE Alu 1 295 -14 14974 189 23 17 chr4 1853196 1853429 -200474918 + L1PB1 LINE L1 3539 3769 -3098 2337 94 7 3 chr4 1853429 1853736 -200474611 + AluSq SINE Alu 2 309 -4 14974 189 23 17 chr4 1853736 1855194 -200473153 + L1PB1 LINE L1 3769 5217 -1650 2364 96 0 7 chr4 1855194 1855495 -200472852 + AluSg SINE Alu 1 299 -11 14974 189 23 17 chr4 1855495 1856925 -200471422 + L1PB1 LINE L1 5217 6782 -85 307 66 0 66 chr4 1856925 1856986 -200471361 + (GGAAA)n Simple_repeat Simple_repeat 1 57 0 1701 159 66 3 chr4 1857007 1857433 -200470914 + L1M4 LINE L1 5149 5597 -587 2053 117 7 0 chr4 1858309 1858599 -200469748 + AluSq SINE Alu 1 292 -21 2187 109 3 0 chr4 1858801 1859103 -200469244 + AluSg SINE Alu 1 303 -7 1380 201 100 75 chr4 1859127 1859253 -200469094 + Charlie2 DNA MER1_type 2169 2290 -572 1895 161 0 0 chr4 1859253 1859563 -200468784 - AluJb SINE Alu -2 310 1 1380 201 100 75 chr4 1859563 1859586 -200468761 + Charlie2 DNA MER1_type 2290 2311 -551 212 75 0 25 chr4 1859586 1859626 -200468721 + (TA)n Simple_repeat Simple_repeat 2 40 0 1380 201 100 75 chr4 1859626 1859898 -200468449 + Charlie2 DNA MER1_type 2311 2575 -287 1723 157 7 14 chr4 1859898 1860237 -200468110 + AluJb SINE Alu 1 312 0 1978 111 14 0 chr4 1860239 1860519 -200467828 + AluSg SINE Alu 1 284 -26 378 0 0 0 chr4 1860522 1860564 -200467783 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 2003 104 7 0 chr4 1860569 1860899 -200467448 + AluSx SINE Alu 3 334 0 1380 201 100 75 chr4 1860899 1861094 -200467253 + Charlie2 DNA MER1_type 2579 2824 -38 1695 135 0 113 chr4 1861094 1861440 -200466907 + AluJb SINE Alu 3 302 0 1380 201 100 75 chr4 1861440 1861481 -200466866 + Charlie2 DNA MER1_type 2824 2862 0 318 211 18 0 chr4 1861712 1861769 -200466578 - MIR SINE MIR -197 65 8 1722 157 0 35 chr4 1861965 1862284 -200466063 - AluJo SINE Alu -4 308 1 303 330 28 132 chr4 1862290 1862608 -200465739 + L2 LINE L2 2988 3272 0 401 240 0 0 chr4 1863168 1863243 -200465104 - MIR SINE MIR -184 78 4 528 296 161 28 chr4 1863257 1863552 -200464795 + L1ME LINE L1 4342 4685 -1461 2127 112 0 0 chr4 1863552 1863847 -200464500 + AluSx SINE Alu 1 295 -17 528 296 161 28 chr4 1863847 1863875 -200464472 + L1ME LINE L1 4685 4708 -1438 246 286 8 17 chr4 1864043 1864162 -200464185 + L1P LINE L1 5244 5361 -785 320 314 38 9 chr4 1864222 1864327 -200464020 + L1ME LINE L1 5510 5617 -2191 359 233 0 117 chr4 1864428 1864548 -200463799 - L1MC4 LINE L1 -1323 6719 6614 282 315 64 34 chr4 1864610 1864877 -200463470 + L1ME LINE L1 5605 5882 -239 561 284 105 4 chr4 1865006 1865235 -200463112 - LTR16A LTR ERVL -97 353 102 258 250 68 61 chr4 1865422 1865570 -200462777 - HERVL LTR ERVL -324 5330 5182 1104 335 113 25 chr4 1865669 1866608 -200461739 - HERVL LTR ERVL -661 5103 4082 545 264 59 42 chr4 1866671 1866910 -200461437 - HERVL LTR ERVL -1333 3663 3421 904 317 117 15 chr4 1866927 1867447 -200460900 - ERVL LTR ERVL -2076 3688 3116 659 191 32 8 chr4 1867619 1867745 -200460602 + FLAM_A SINE Alu 13 141 -1 2114 85 7 43 chr4 1867748 1868053 -200460294 + AluSp SINE Alu 1 294 -19 630 263 100 11 chr4 1868056 1868246 -200460101 - ERVL LTR ERVL -2069 2927 2721 2345 253 110 21 chr4 1868306 1869052 -200459295 - ERVL LTR ERVL -2427 2569 1758 2195 234 66 12 chr4 1869072 1869663 -200458684 - ERVL LTR ERVL -3545 1451 829 605 246 186 80 chr4 1869663 1870351 -200457996 + LTR41 LTR ERVL 1 761 -12 857 183 35 18 chr4 1870735 1870904 -200457443 - AluJb SINE Alu -12 300 129 641 110 0 20 chr4 1870916 1871016 -200457331 + MER4A LTR ERV1 1 98 -566 2342 91 66 43 chr4 1871022 1871177 -200457170 + MER4A LTR ERV1 261 411 -253 1868 146 7 0 chr4 1871177 1871472 -200456875 - AluSx SINE Alu -15 297 1 2342 91 66 43 chr4 1871472 1871711 -200456636 + MER4A LTR ERV1 411 664 0 854 164 205 52 chr4 1871872 1872140 -200456207 + AluJb SINE Alu 2 310 -2 1032 250 122 22 chr4 1872225 1872585 -200455762 - ERVL LTR ERVL -4600 396 1 235 208 194 14 chr4 1872585 1872657 -200455690 - LTR16A LTR ERVL 0 450 366 6127 120 36 106 chr4 1872776 1872838 -200455509 - Tigger3b DNA MER2_type -1818 1210 1145 2096 156 3 9 chr4 1872838 1873177 -200455170 + MER1B DNA MER1_type 1 337 0 6127 120 36 106 chr4 1873177 1874266 -200454081 - Tigger3b DNA MER2_type -1883 1145 157 2139 104 3 3 chr4 1874266 1874563 -200453784 + AluSq SINE Alu 1 297 -16 6127 120 36 106 chr4 1874563 1874709 -200453638 - Tigger3b DNA MER2_type -2871 157 2 22 70 0 0 chr4 1874717 1874760 -200453587 + AT_rich Low_complexity Low_complexity 1 43 0 201 133 0 0 chr4 1874855 1874885 -200453462 + (TATG)n Simple_repeat Simple_repeat 3 32 0 1863 121 4 0 chr4 1874907 1875179 -200453168 + AluSx SINE Alu 37 309 -3 21 36 0 0 chr4 1875282 1875310 -200453037 + AT_rich Low_complexity Low_complexity 1 28 0 1674 150 46 4 chr4 1875320 1875600 -200452747 + AluJo SINE Alu 4 295 -17 495 296 123 28 chr4 1875602 1875936 -200452411 - MLT1J LTR MaLR -71 440 38 609 263 44 12 chr4 1876595 1876755 -200451592 + MLT1E LTR MaLR 1 165 -428 1394 231 87 9 chr4 1876781 1877115 -200451232 + MLT1E LTR MaLR 226 585 -8 506 135 0 0 chr4 1877237 1877311 -200451036 - FLAM SINE Alu -16 127 54 180 143 0 0 chr4 1877843 1877885 -200450462 + (A)n Simple_repeat Simple_repeat 1 42 0 2104 73 49 0 chr4 1877947 1878234 -200450113 - AluY SINE Alu -10 301 1 2045 92 14 7 chr4 1879141 1879456 -200448891 + AluSq SINE Alu 1 317 0 1971 131 0 0 chr4 1879615 1879898 -200448449 + AluSx SINE Alu 5 287 -25 2049 104 3 3 chr4 1880917 1881205 -200447142 + AluSc SINE Alu 1 288 -21 22 0 0 0 chr4 1881769 1881791 -200446556 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 1881809 1881834 -200446513 + AT_rich Low_complexity Low_complexity 1 25 0 294 232 274 0 chr4 1882024 1882119 -200446228 - L2 LINE L2 0 3313 3193 401 276 79 26 chr4 1882525 1882677 -200445670 + MER5A DNA MER1_type 29 188 -1 444 221 19 10 chr4 1883010 1883114 -200445233 + HsTC2 DNA Tc2 1 105 -1793 1132 213 98 21 chr4 1883116 1883454 -200444893 + HsTC2 DNA Tc2 1522 1885 -13 527 308 88 65 chr4 1883456 1883807 -200444540 + L1ME4a LINE L1 5524 5882 -239 575 248 27 148 chr4 1884228 1884488 -200443859 + L1M4 LINE L1 2272 2475 -3671 2176 95 0 0 chr4 1884488 1884782 -200443565 - AluSg SINE Alu -16 294 1 575 248 27 148 chr4 1884782 1884892 -200443455 + L1M4 LINE L1 2475 2597 -3549 597 116 67 37 chr4 1884912 1885032 -200443315 + L1M3 LINE L1 5429 5554 -626 446 208 43 87 chr4 1885021 1885279 -200443068 + L1ME1 LINE L1 5678 5904 -262 * 1915 105 7 18 chr4 1886175 1886499 -200441848 + AluSx SINE Alu 1 321 0 1384 156 80 51 chr4 1886771 1887046 -200441301 + AluJo SINE Alu 13 295 -17 330 174 11 33 chr4 1887046 1887138 -200441209 + GA-rich Low_complexity Low_complexity 1 90 0 196 272 102 37 chr4 1887146 1887338 -200441009 + MIR SINE MIR 16 218 -44 372 253 91 0 chr4 1887475 1887574 -200440773 - MER91C DNA MER1_type 0 140 33 214 218 18 0 chr4 1888027 1888082 -200440265 + A-rich Low_complexity Low_complexity 5 60 0 287 204 0 84 chr4 1891893 1892035 -200436312 + (CGGGG)n Simple_repeat Simple_repeat 4 133 0 2273 51 34 3 chr4 1892377 1892425 -200435922 + AluSg SINE Alu 1 46 -264 180 0 0 0 chr4 1892425 1892445 -200435902 + (G)n Simple_repeat Simple_repeat 1 20 0 2273 51 34 3 chr4 1892445 1892688 -200435659 + AluSg SINE Alu 46 301 -9 267 261 103 18 chr4 1892803 1892969 -200435378 - LTR37B LTR ERV1 -152 316 106 770 74 11 63 chr4 1893494 1893683 -200434664 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 228 292 0 0 chr4 1899426 1899491 -200428856 + (TG)n Simple_repeat Simple_repeat 1 65 0 209 262 0 0 chr4 1899675 1899717 -200428630 + (CGGA)n Simple_repeat Simple_repeat 2 43 0 314 244 51 0 chr4 1903796 1903874 -200424473 - L1ME4a LINE L1 -57 6064 5983 345 306 85 56 chr4 1903878 1904307 -200424040 + L1ME4a LINE L1 5127 6120 -1 217 189 167 33 chr4 1907323 1907413 -200420934 + L2 LINE L2 3133 3234 -38 334 311 67 8 chr4 1909891 1910010 -200418337 + MIR SINE MIR 94 219 -43 24 67 0 0 chr4 1911024 1911069 -200417278 + GC_rich Low_complexity Low_complexity 1 45 0 40 87 0 0 chr4 1911135 1911238 -200417109 + GC_rich Low_complexity Low_complexity 1 103 0 204 184 41 0 chr4 1911263 1911312 -200417035 + G-rich Low_complexity Low_complexity 4 54 0 34 42 0 0 chr4 1911441 1911489 -200416858 + GC_rich Low_complexity Low_complexity 1 48 0 48 72 0 0 chr4 1911577 1911674 -200416673 + GC_rich Low_complexity Low_complexity 1 97 0 201 238 16 16 chr4 1911794 1911857 -200416490 + (CCGGG)n Simple_repeat Simple_repeat 3 65 0 28 29 0 0 chr4 1912194 1912229 -200416118 + GC_rich Low_complexity Low_complexity 1 35 0 2162 60 53 3 chr4 1912738 1913023 -200415324 - AluSc SINE Alu -10 299 1 291 269 47 32 chr4 1915697 1915858 -200412489 + MIR SINE MIR 89 250 -12 192 338 44 22 chr4 1915851 1915987 -200412360 + L3 LINE CR1 1336 1474 -103 * 205 290 116 0 chr4 1917820 1917889 -200410458 + MIR SINE MIR 107 183 -79 296 276 13 0 chr4 1918162 1918238 -200410109 - MER81 DNA DNA -36 78 2 189 264 0 0 chr4 1922112 1922184 -200406163 + (TG)n Simple_repeat Simple_repeat 1 72 0 637 275 117 43 chr4 1924190 1924605 -200403742 + MLT1D LTR MaLR 22 467 0 291 206 28 19 chr4 1924948 1925055 -200403292 - HAL1 LINE L1 -1331 1176 1069 335 361 100 11 chr4 1925068 1925248 -200403099 - HAL1 LINE L1 -1490 1017 822 284 222 25 25 chr4 1925257 1925338 -200403009 + L1ME LINE L1 5510 5590 -572 271 266 112 21 chr4 1925909 1926052 -200402295 - HAL1 LINE L1 -1814 693 538 1961 229 50 12 chr4 1926069 1926584 -200401763 + L1MB3 LINE L1 5647 6181 -2 363 222 0 0 chr4 1926707 1926788 -200401559 + L1MB7 LINE L1 6104 6184 0 2264 91 3 3 chr4 1926792 1927101 -200401246 + AluSx SINE Alu 2 310 -2 1370 203 29 73 chr4 1927108 1927846 -200400501 + L1MB7 LINE L1 4316 5086 -1098 1584 133 0 4 chr4 1927846 1928079 -200400268 - AluJb SINE Alu -78 234 3 1370 203 29 73 chr4 1928079 1928766 -200399581 + L1MB7 LINE L1 5086 5802 -382 1965 106 7 0 chr4 1928766 1929041 -200399306 + AluSx SINE Alu 24 300 -12 1370 203 29 73 chr4 1929041 1929091 -200399256 + L1MB7 LINE L1 5802 5853 -331 2373 57 10 7 chr4 1929091 1929389 -200398958 + AluY SINE Alu 1 299 -12 1370 203 29 73 chr4 1929389 1929621 -200398726 + L1MB7 LINE L1 5853 6130 -54 302 328 61 23 chr4 1929668 1929799 -200398548 + L1ME LINE L1 5722 5857 -264 1857 142 6 25 chr4 1929818 1930136 -200398211 + AluJo SINE Alu 1 312 0 2053 175 47 11 chr4 1930933 1931315 -200397032 - MSTD LTR MaLR 0 396 1 773 148 8 0 chr4 1932411 1932533 -200395814 + FLAM_A SINE Alu 20 142 0 1061 163 2 6 chr4 1932695 1933203 -200395144 + (TCCA)n Simple_repeat Simple_repeat 1 506 0 637 200 8 8 chr4 1933851 1933971 -200394376 - AluJb SINE Alu -47 265 146 2416 197 15 15 chr4 1934513 1934979 -200393368 + MLT1C LTR MaLR 1 466 -1 394 231 29 0 chr4 1936081 1936185 -200392162 + MLT1E3 LTR MaLR 442 548 -76 753 252 204 21 chr4 1936448 1936827 -200391520 + MLT1D LTR MaLR 52 389 -7 182 170 0 64 chr4 1937731 1937778 -200390569 - L2 LINE L2 -220 3052 3009 288 218 0 0 chr4 1938230 1938285 -200390062 + MIR SINE MIR 92 146 -116 1632 174 54 14 chr4 1938290 1938584 -200389763 + AluJo SINE Alu 1 306 -6 1686 186 13 0 chr4 1938596 1938903 -200389444 + AluSx SINE Alu 1 311 -1 346 178 78 9 chr4 1939186 1939285 -200389062 - AluJ/FLAM SINE Alu -225 77 1 247 167 0 121 chr4 1939285 1939351 -200388996 - MIR SINE MIR -126 136 79 188 298 0 0 chr4 1940813 1940860 -200387487 - L3b LINE CR1 -237 1346 1300 5368 235 53 35 chr4 1942239 1943066 -200385281 + L1ME LINE L1 3475 4285 -1861 2502 57 0 0 chr4 1943066 1943366 -200384981 + AluY SINE Alu 1 300 -11 5368 235 53 35 chr4 1943366 1944424 -200383923 + L1ME LINE L1 4285 5395 -751 822 126 15 37 chr4 1944435 1944570 -200383777 + FLAM_A SINE Alu 10 141 -1 675 174 58 0 chr4 1944573 1944711 -200383636 + L1ME LINE L1 5392 5537 -629 2122 113 3 29 chr4 1944754 1945064 -200383283 - AluSq SINE Alu -10 303 2 255 319 148 0 chr4 1945237 1945372 -200382975 + L2 LINE L2 2919 3073 -240 308 298 21 0 chr4 1948962 1949056 -200379291 + L1ME LINE L1 5561 5656 -465 697 243 98 6 chr4 1949056 1949229 -200379118 + AluJo SINE Alu 120 308 -4 330 183 11 21 chr4 1949229 1949322 -200379025 + G-rich Low_complexity Low_complexity 2 93 0 301 275 142 0 chr4 1949330 1949450 -200378897 + L1M4 LINE L1 3081 3217 -2929 1681 181 7 16 chr4 1949482 1949792 -200378555 - AluJo SINE Alu -3 309 3 244 228 0 0 chr4 1949799 1949856 -200378491 + L1ME4a LINE L1 6061 6117 -4 209 276 67 75 chr4 1950830 1950964 -200377383 + L2 LINE L2 3138 3270 -2 1084 291 59 0 chr4 1952162 1952568 -200375779 + L1MB7 LINE L1 5477 5906 -278 304 215 43 32 chr4 1952701 1952794 -200375553 + L1MB7 LINE L1 5908 6001 -183 399 296 54 96 chr4 1955599 1955879 -200372468 - L2 LINE L2 0 3272 3005 254 281 0 0 chr4 1956055 1956112 -200372235 - L1ME3A LINE L1 -69 6170 6114 571 151 35 126 chr4 1956271 1956470 -200371877 - MER53 DNA DNA -6 183 3 312 351 161 0 chr4 1956475 1956686 -200371661 - L1ME3A LINE L1 -306 5933 5689 1372 241 71 41 chr4 1956747 1957192 -200371155 - L1ME3A LINE L1 -652 5587 5106 1604 159 37 40 chr4 1957192 1957488 -200370859 - AluJo SINE Alu -15 297 3 1372 241 71 41 chr4 1957488 1957795 -200370552 - L1ME3A LINE L1 -1133 5106 4810 198 0 0 0 chr4 1957811 1957833 -200370514 + (TTC)n Simple_repeat Simple_repeat 3 24 0 835 219 0 0 chr4 1957835 1957981 -200370366 - FRAM SINE Alu -30 146 1 376 252 135 0 chr4 1958002 1958113 -200370234 + L1ME LINE L1 5645 5770 -400 355 206 0 0 chr4 1958127 1958195 -200370152 - L1ME3A LINE L1 -1464 4751 4684 231 167 0 0 chr4 1958195 1958237 -200370110 + GA-rich Low_complexity Low_complexity 1 42 0 913 112 22 11 chr4 1958262 1958440 -200369907 + GA-rich Low_complexity Low_complexity 1 180 0 241 244 0 0 chr4 1958440 1958485 -200369862 + polypurine Low_complexity Low_complexity 1 45 0 406 332 59 5 chr4 1958497 1958717 -200369630 - L1ME3A LINE L1 -1538 4677 4446 1466 185 188 28 chr4 1958717 1959111 -200369236 + MSTB2 LTR MaLR 1 457 0 2736 249 32 78 chr4 1959114 1959736 -200368611 - L1ME3A LINE L1 -1774 4441 3792 1847 190 0 0 chr4 1959736 1960036 -200368311 - AluJb SINE Alu -10 302 3 2736 249 32 78 chr4 1960036 1960221 -200368126 - L1ME3A LINE L1 -2423 3792 3600 1832 189 3 0 chr4 1960221 1960518 -200367829 + AluJb SINE Alu 1 298 -14 2736 249 32 78 chr4 1960518 1960943 -200367404 - L1ME3A LINE L1 -2615 3600 3283 2191 128 0 7 chr4 1960943 1961239 -200367108 + AluSg SINE Alu 1 294 -16 2736 249 32 78 chr4 1961239 1961473 -200366874 - L1ME3A LINE L1 -2932 3283 3040 1129 192 0 0 chr4 1961474 1961656 -200366691 - AluJo SINE Alu -10 302 121 438 173 0 37 chr4 1961732 1961813 -200366534 + AluSc SINE Alu 122 199 -110 659 118 0 0 chr4 1961815 1961908 -200366439 - AluJ/FLAM SINE Alu -218 94 2 1277 279 52 67 chr4 1961914 1961963 -200366384 - L1MEc LINE L1 -3184 3031 2983 607 180 62 23 chr4 1961963 1962091 -200366256 + FLAM_C SINE Alu 1 133 0 1277 279 52 67 chr4 1962091 1962146 -200366201 - L1MEc LINE L1 -3232 2983 2929 2663 49 3 0 chr4 1962146 1962454 -200365893 + AluY SINE Alu 1 309 -2 2163 139 0 3 chr4 1962462 1962765 -200365582 + AluSx SINE Alu 1 302 -10 1277 279 52 67 chr4 1962765 1962948 -200365399 - L1MEc LINE L1 -3293 2922 2738 1710 204 10 0 chr4 1962948 1963257 -200365090 - AluJo SINE Alu 0 312 1 1277 279 52 67 chr4 1963257 1963287 -200365060 - L1MEc LINE L1 -3477 2738 2709 1890 109 81 21 chr4 1963287 1963570 -200364777 + AluSx SINE Alu 5 304 -8 1277 279 52 67 chr4 1963570 1964366 -200363981 - L1MEc LINE L1 -3506 2709 1945 1877 137 28 11 chr4 1964491 1964775 -200363572 - AluJo SINE Alu -23 289 1 925 257 63 86 chr4 1964786 1964979 -200363368 - L1MEc LINE L1 -4634 1762 1566 2043 123 44 0 chr4 1964979 1965272 -200363075 - AluSx SINE Alu -6 306 1 925 257 63 86 chr4 1965272 1965868 -200362479 - L1MEc LINE L1 -4830 1566 991 1964 154 6 40 chr4 1965881 1966205 -200362142 - 7SLRNA srpRNA srpRNA -6 314 2 2146 116 0 0 chr4 1966385 1966669 -200361678 - AluY SINE Alu -5 306 23 2345 112 3 10 chr4 1966673 1966987 -200361360 - AluSx SINE Alu 0 312 1 2317 112 3 0 chr4 1967326 1967631 -200360716 - AluSx SINE Alu -6 306 1 2022 89 4 0 chr4 1967975 1968223 -200360124 + AluSx SINE Alu 1 249 -63 878 163 42 48 chr4 1968462 1968628 -200359719 + AluJo SINE Alu 6 170 -142 283 309 0 0 chr4 1969493 1969577 -200358770 + (TGG)n Simple_repeat Simple_repeat 1 84 0 3570 189 83 28 chr4 1972297 1973242 -200355105 - L1MB5 LINE L1 0 6174 5152 3394 22 0 0 chr4 1973242 1973652 -200354695 - L1PA2 LINE L1 0 6155 5746 3570 189 83 28 chr4 1973652 1973764 -200354583 - L1MB5 LINE L1 -1022 5152 5048 1482 168 111 0 chr4 1973765 1974062 -200354285 - MLT2D LTR ERVL -8 406 77 1684 203 30 0 chr4 1975292 1975592 -200352755 - AluJo SINE Alu -3 309 1 6880 146 39 58 chr4 1975615 1976666 -200351681 - L1 LINE L1 -845 5301 4232 2238 110 0 0 chr4 1976666 1976948 -200351399 + AluSg SINE Alu 1 282 -28 522 0 0 0 chr4 1976948 1977006 -200351341 + (TA)n Simple_repeat Simple_repeat 2 59 0 6880 146 39 58 chr4 1977006 1977478 -200350869 - L1 LINE L1 -1912 4234 3805 4333 170 60 9 chr4 1977477 1978372 -200349975 + L1MA7 LINE L1 5341 6281 -10 * 615 126 0 0 chr4 1978390 1978485 -200349862 - MLT2D LTR ERVL -319 95 1 2327 211 27 9 chr4 1978516 1979075 -200349272 - L1MB5 LINE L1 -1188 4958 4390 821 110 0 0 chr4 1979106 1979233 -200349114 + L1MB4 LINE L1 5786 5912 -271 311 145 87 0 chr4 1979264 1979333 -200349014 + L1MB4 LINE L1 6106 6180 0 250 288 16 24 chr4 1979482 1979607 -200348740 - L1ME LINE L1 -325 5796 5673 901 203 52 48 chr4 1979728 1979979 -200348368 + L1MB8 LINE L1 5914 6165 -13 237 253 6 69 chr4 1980163 1980337 -200348010 + GA-rich Low_complexity Low_complexity 3 165 0 367 243 0 42 chr4 1980734 1980878 -200347469 + GA-rich Low_complexity Low_complexity 2 139 0 715 179 0 0 chr4 1981058 1981175 -200347172 + FLAM_C SINE Alu 2 118 -25 185 32 0 65 chr4 1981190 1981221 -200347126 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 192 314 0 0 chr4 1982264 1982315 -200346032 + L2 LINE L2 3258 3308 -5 342 344 0 16 chr4 1982850 1983033 -200345314 + C-rich Low_complexity Low_complexity 1 180 0 261 55 0 73 chr4 1984435 1984490 -200343857 + (CCCCCT)n Simple_repeat Simple_repeat 2 52 0 994 224 117 13 chr4 1984850 1985149 -200343198 + LTR53 LTR ERVL 190 519 0 217 203 51 13 chr4 1986363 1986521 -200341826 + (AGGTG)n Simple_repeat Simple_repeat 3 166 0 182 224 48 0 chr4 1986537 1986684 -200341663 + (TGAG)n Simple_repeat Simple_repeat 3 156 0 1543 161 51 11 chr4 1987225 1987498 -200340849 + AluJo SINE Alu 5 288 -24 1996 128 0 17 chr4 1987928 1988242 -200340105 + AluSx SINE Alu 1 309 0 1855 119 51 10 chr4 1988437 1988731 -200339616 - AluY SINE Alu -2 309 4 342 139 0 0 chr4 1989512 1989584 -200338763 + (GGGGA)n Simple_repeat Simple_repeat 2 73 0 194 195 24 0 chr4 1990641 1990682 -200337665 + MIR SINE MIR 108 149 -113 2090 108 0 0 chr4 1991360 1991628 -200336719 + AluSx SINE Alu 1 268 -44 928 186 0 0 chr4 1992018 1992179 -200336168 - FRAM SINE Alu -14 162 2 411 241 15 53 chr4 1992799 1992932 -200335415 - L1ME LINE L1 -457 5664 5537 22 35 0 0 chr4 1993097 1993126 -200335221 + AT_rich Low_complexity Low_complexity 1 29 0 375 215 84 9 chr4 1993454 1993561 -200334786 + L2 LINE L2 3187 3301 -12 6318 226 64 42 chr4 1993561 1994237 -200334110 + L1MEc LINE L1 34 693 -5522 2368 99 3 13 chr4 1994237 1994551 -200333796 + AluSp SINE Alu 1 311 -2 2258 80 42 3 chr4 1994552 1994840 -200333507 + AluY SINE Alu 1 299 -12 6318 226 64 42 chr4 1994840 1995669 -200332678 + L1MEc LINE L1 693 1502 -4713 2441 71 0 43 chr4 1995669 1995993 -200332354 + AluY SINE Alu 1 310 -1 6318 226 64 42 chr4 1995993 1998267 -200330080 + L1MEc LINE L1 1502 3924 -2291 286 254 17 1 chr4 1998280 1998356 -200329991 + MER5B DNA MER1_type 75 163 -26 246 299 56 56 chr4 1998644 1998751 -200329596 + MIR3 SINE MIR 95 201 -7 2123 36 4 4 chr4 1998877 1999151 -200329196 + L1PA3 LINE L1 5880 6153 -2 232 250 140 20 chr4 1999195 1999295 -200329052 - L2 LINE L2 -9 3304 3193 1016 217 165 37 chr4 1999353 1999649 -200328698 + L1MEc LINE L1 3908 4270 -1945 345 24 0 0 chr4 1999649 1999691 -200328656 + (CA)n Simple_repeat Simple_repeat 2 43 0 1016 217 165 37 chr4 1999691 1999795 -200328552 + L1MEc LINE L1 4270 4359 -1856 2690 46 0 0 chr4 1999807 2000113 -200328234 + AluY SINE Alu 1 306 -5 3314 197 45 38 chr4 2000114 2000951 -200327396 + MER21B LTR ERV1 1 843 -20 330 241 0 0 chr4 2000969 2001056 -200327291 + L1MEc LINE L1 4354 4440 -1775 2192 105 0 0 chr4 2001056 2001333 -200327014 + AluSx SINE Alu 1 277 -35 971 203 30 0 chr4 2001333 2001530 -200326817 - MER21B LTR ERV1 -194 669 467 1021 209 67 4 chr4 2001580 2001805 -200326542 + MER8 DNA MER2_type 1 239 0 256 219 0 41 chr4 2001999 2002072 -200326275 + GA-rich Low_complexity Low_complexity 1 70 0 2425 105 0 0 chr4 2004078 2004383 -200323964 - AluSq SINE Alu -8 305 1 585 0 0 0 chr4 2004823 2004888 -200323459 + (TA)n Simple_repeat Simple_repeat 1 65 0 22 0 0 0 chr4 2004870 2004892 -200323455 + AT_rich Low_complexity Low_complexity 1 22 0 2362 109 0 0 chr4 2004894 2005197 -200323150 - AluSg SINE Alu -7 303 1 1862 163 3 3 chr4 2005207 2005495 -200322852 - AluJo SINE Alu -24 288 1 1915 124 0 59 chr4 2006478 2006785 -200321562 - AluSx SINE Alu -22 290 2 384 376 6 0 chr4 2007737 2007899 -200320448 + (TG)n Simple_repeat Simple_repeat 1 163 0 1493 185 10 89 chr4 2008288 2008399 -200319948 + MLT1B LTR MaLR 1 119 -271 1814 148 0 43 chr4 2008399 2008558 -200319789 - AluJo SINE Alu -20 292 151 2326 80 0 22 chr4 2008558 2008870 -200319477 - AluY SINE Alu -6 305 1 1814 148 0 43 chr4 2008870 2009015 -200319332 - AluJo SINE Alu -161 151 1 1493 185 10 89 chr4 2009015 2009309 -200319038 + MLT1B LTR MaLR 119 374 -16 444 67 0 0 chr4 2009979 2010039 -200318308 + (CA)n Simple_repeat Simple_repeat 1 60 0 1668 190 122 117 chr4 2012826 2013399 -200314948 + MER70B LTR ERVL 1 576 -2 322 324 41 14 chr4 2013402 2013547 -200314800 - MIR SINE MIR -77 185 37 254 153 85 17 chr4 2017634 2017693 -200310654 - L1MB7 LINE L1 -10 6174 6112 739 104 0 0 chr4 2017720 2017826 -200310521 + FLAM_C SINE Alu 37 142 -1 1020 178 23 0 chr4 2017826 2018000 -200310347 + AluJb SINE Alu 105 282 -30 2871 198 96 14 chr4 2018000 2018721 -200309626 - L1MB7 LINE L1 -57 6127 5348 900 221 82 41 chr4 2019092 2019440 -200308907 + MLT1C LTR MaLR 42 411 -56 2312 101 3 0 chr4 2019457 2019765 -200308582 - AluSc SINE Alu 0 309 1 191 36 36 0 chr4 2021265 2021293 -200307054 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1201 98 6 0 chr4 2072736 2072900 -200255447 + AluSp SINE Alu 58 222 -91 850 140 0 14 chr4 2072905 2073048 -200255299 + AluSc SINE Alu 164 304 -5 2193 97 0 0 chr4 2073137 2073426 -200254921 - AluSc SINE Alu -12 297 9 1926 96 0 83 chr4 2073524 2073708 -200254639 - AluSx SINE Alu -15 297 150 1929 125 31 0 chr4 2073708 2073995 -200254352 - AluSg SINE Alu -14 296 1 1926 96 0 83 chr4 2073995 2074134 -200254213 - AluSx SINE Alu -162 150 1 1933 126 3 7 chr4 2074775 2075076 -200253271 - AluSc SINE Alu -9 300 1 762 148 0 87 chr4 2075108 2075257 -200253090 + AluJb SINE Alu 4 139 -173 1956 122 0 46 chr4 2075265 2075592 -200252755 + AluSx SINE Alu 1 312 0 1184 216 7 49 chr4 2075972 2076110 -200252237 + AluJo SINE Alu 6 148 -164 2126 94 0 10 chr4 2076110 2076409 -200251938 + AluSg SINE Alu 1 296 -14 1184 216 7 49 chr4 2076409 2076576 -200251771 + AluJo SINE Alu 148 298 -14 730 247 105 34 chr4 2076632 2076677 -200251670 - L1ME3A LINE L1 -194 5972 5932 2379 75 0 0 chr4 2076677 2076982 -200251365 - AluSx SINE Alu -7 305 1 730 247 105 34 chr4 2076982 2077328 -200251019 - L1ME3A LINE L1 -234 5932 5556 1308 189 10 69 chr4 2077383 2077557 -200250790 - AluJo SINE Alu -24 288 138 2208 92 0 0 chr4 2077557 2077849 -200250498 + AluSg SINE Alu 1 292 -18 1308 189 10 69 chr4 2077849 2077980 -200250367 - AluJo SINE Alu -174 138 1 2236 208 86 88 chr4 2077991 2078646 -200249701 - L1ME1 LINE L1 -44 6122 5467 899 211 131 65 chr4 2078646 2078795 -200249552 - AluJo SINE Alu -9 293 155 1908 123 0 20 chr4 2078795 2079115 -200249232 + AluSq SINE Alu 1 314 0 899 211 131 65 chr4 2079115 2079239 -200249108 - AluJo SINE Alu -147 155 1 2236 208 86 88 chr4 2079239 2079275 -200249072 - L1ME1 LINE L1 -699 5467 5432 321 68 0 0 chr4 2079275 2079319 -200249028 + (TG)n Simple_repeat Simple_repeat 2 45 0 1973 129 3 0 chr4 2079320 2079614 -200248733 - AluSx SINE Alu -17 295 1 2236 208 86 88 chr4 2079614 2079761 -200248586 - L1ME1 LINE L1 -734 5432 5286 2177 91 7 0 chr4 2079761 2080059 -200248288 - AluSq SINE Alu -13 300 1 2236 208 86 88 chr4 2080059 2080155 -200248192 - L1ME1 LINE L1 -880 5286 5191 1926 148 0 0 chr4 2080155 2080445 -200247902 - AluSx SINE Alu -22 290 1 2236 208 86 88 chr4 2080445 2080611 -200247736 - L1ME1 LINE L1 -975 5191 5024 1972 126 7 10 chr4 2080613 2080923 -200247424 - AluSx SINE Alu -1 311 3 460 214 12 89 chr4 2080934 2081072 -200247275 - L1ME3A LINE L1 -965 5181 5057 2768 13 0 0 chr4 2081072 2081383 -200246964 - AluYa5 SINE Alu 0 311 1 460 214 12 89 chr4 2081383 2081412 -200246935 - L1ME3A LINE L1 -1089 5057 5027 2022 133 0 3 chr4 2081412 2081714 -200246633 - AluSg SINE Alu -9 301 1 1695 169 0 28 chr4 2081714 2082033 -200246314 - AluSx SINE Alu -1 311 1 544 247 45 56 chr4 2082037 2082115 -200246232 - L1ME3A LINE L1 -2274 3872 3795 2135 85 4 0 chr4 2082115 2082420 -200245927 - AluSp SINE Alu 0 309 4 2091 88 3 10 chr4 2082424 2082774 -200245573 - AluY SINE Alu 0 311 14 544 247 45 56 chr4 2082774 2082904 -200245443 - L1ME3A LINE L1 -2354 3792 3659 1272 181 17 0 chr4 2082904 2083136 -200245211 - MER46A DNA MER2_type 0 236 1 544 247 45 56 chr4 2083136 2083187 -200245160 - L1ME3A LINE L1 -2487 3659 3609 2304 223 106 66 chr4 2083202 2083516 -200244831 - L1ME3A LINE L1 -2734 3412 3112 1612 173 0 31 chr4 2083516 2083696 -200244651 - AluJo SINE Alu -2 310 143 2458 56 0 0 chr4 2083696 2083999 -200244348 - AluY SINE Alu -8 303 1 1612 173 0 31 chr4 2083999 2084136 -200244211 - AluJo SINE Alu -169 143 3 2304 223 106 66 chr4 2084136 2084221 -200244126 - L1ME3A LINE L1 -3034 3112 3032 2159 75 4 0 chr4 2084221 2084524 -200243823 - AluY SINE Alu 0 304 1 1812 151 10 3 chr4 2084531 2084835 -200243512 - AluSx SINE Alu -6 306 1 2304 223 106 66 chr4 2084835 2084871 -200243476 - L1ME3A LINE L1 -3119 3027 2994 814 206 6 24 chr4 2084871 2085036 -200243311 + FAM SINE Alu 1 162 -13 2304 223 106 66 chr4 2085036 2085061 -200243286 - L1ME3A LINE L1 -3152 2994 2971 2202 80 0 0 chr4 2085061 2085350 -200242997 - AluSc SINE Alu -4 305 17 2304 223 106 66 chr4 2085350 2085382 -200242965 - L1ME3A LINE L1 -3175 2971 2942 2002 138 51 28 chr4 2085382 2085738 -200242609 + THE1B LTR MaLR 1 364 0 2304 223 106 66 chr4 2085738 2085770 -200242577 - L1ME3A LINE L1 -3204 2942 2913 2008 120 0 3 chr4 2085770 2086071 -200242276 - AluSg SINE Alu -10 300 1 2304 223 106 66 chr4 2086071 2086673 -200241674 - L1ME3A LINE L1 -3233 2913 2226 299 173 0 19 chr4 2087020 2087072 -200241275 + Alu SINE Alu 2 52 -251 1498 166 6 110 chr4 2087185 2087296 -200241051 + AluJb SINE Alu 2 123 -179 2181 82 3 0 chr4 2087296 2087588 -200240759 - AluY SINE Alu -3 308 16 1898 115 31 0 chr4 2087596 2087883 -200240464 - AluSq SINE Alu -17 296 1 1498 166 6 110 chr4 2087883 2087898 -200240449 + AluJb SINE Alu 130 145 -157 2111 89 10 3 chr4 2087898 2088191 -200240156 - AluSc SINE Alu -14 295 1 1498 166 6 110 chr4 2088191 2088380 -200239967 + AluJb SINE Alu 145 293 -9 403 92 0 0 chr4 2088601 2088666 -200239681 - L1MC3 LINE L1 0 7785 7721 1840 149 24 24 chr4 2088666 2088995 -200239352 - MER44D DNA MER2_type 0 609 11 846 181 99 45 chr4 2089020 2089241 -200239106 - L1MD3 LINE L1 -67 7928 7696 2189 92 0 7 chr4 2089358 2089652 -200238695 + AluSc SINE Alu 1 292 -17 1937 136 13 7 chr4 2089678 2089988 -200238359 + AluSx SINE Alu 1 312 0 1086 216 7 33 chr4 2090103 2090376 -200237971 - AluJo SINE Alu -46 266 1 1862 143 10 3 chr4 2090405 2090706 -200237641 + AluSx SINE Alu 1 303 -9 287 234 9 56 chr4 2090890 2090997 -200237350 - MIR3 SINE MIR -1 207 106 876 222 0 0 chr4 2091119 2091281 -200237066 - AluJ SINE Alu -4 298 137 2058 92 58 3 chr4 2091634 2091929 -200236418 - AluSq SINE Alu -2 311 1 809 140 0 37 chr4 2092503 2092639 -200235708 - AluJ SINE Alu -181 131 1 1843 147 3 7 chr4 2092869 2093169 -200235178 - AluSx SINE Alu -13 299 1 2247 95 0 0 chr4 2093180 2093484 -200234863 - AluSx SINE Alu -8 304 1 281 310 14 0 chr4 2093734 2093805 -200234542 + MIR3 SINE MIR 114 185 -23 1573 160 11 14 chr4 2093853 2094135 -200234212 + AluJo SINE Alu 1 281 -31 2133 106 3 0 chr4 2094311 2094614 -200233733 - AluSg SINE Alu -5 305 2 2351 88 0 0 chr4 2094622 2094930 -200233417 - AluSg SINE Alu -2 308 1 646 169 113 8 chr4 2095111 2095235 -200233112 + FLAM_C SINE Alu 3 139 -4 1210 238 127 19 chr4 2095259 2095670 -200232677 + Charlie7 DNA MER1_type 409 863 -1749 1608 148 34 17 chr4 2095780 2096071 -200232276 - AluJb SINE Alu -16 296 1 3151 203 116 93 chr4 2096310 2096484 -200231863 + Charlie7 DNA MER1_type 926 1095 -1517 1399 144 59 46 chr4 2096484 2096789 -200231558 - AluJo SINE Alu -3 309 1 3151 203 116 93 chr4 2096789 2096943 -200231404 + Charlie7 DNA MER1_type 1095 1244 -1368 2051 114 7 10 chr4 2096943 2097249 -200231098 - AluSc SINE Alu -4 305 1 3151 203 116 93 chr4 2097249 2097745 -200230602 + Charlie7 DNA MER1_type 1244 1727 -885 2308 75 0 0 chr4 2097745 2098040 -200230307 - AluY SINE Alu -16 295 1 3151 203 116 93 chr4 2098040 2098101 -200230246 + Charlie7 DNA MER1_type 1727 1785 -827 2076 103 10 3 chr4 2098101 2098393 -200229954 + AluSx SINE Alu 1 294 -18 3151 203 116 93 chr4 2098393 2098626 -200229721 + Charlie7 DNA MER1_type 1785 2011 -601 2414 51 0 29 chr4 2098626 2098941 -200229406 - AluY SINE Alu -5 306 1 3151 203 116 93 chr4 2098941 2099359 -200228988 + Charlie7 DNA MER1_type 2011 2501 -111 873 184 13 0 chr4 2100067 2100225 -200228122 + FRAM SINE Alu 1 160 -16 1886 127 37 3 chr4 2100661 2100961 -200227386 - AluSx SINE Alu -2 310 1 1574 156 10 27 chr4 2101204 2101499 -200226848 - AluJo SINE Alu -22 290 1 784 157 0 0 chr4 2103241 2103362 -200224985 - AluSg/x SINE Alu -18 294 174 1572 184 10 16 chr4 2103544 2103854 -200224493 - AluJb SINE Alu -2 310 3 1871 170 89 6 chr4 2103854 2104201 -200224146 + MSTB1 LTR MaLR 57 432 0 510 319 42 78 chr4 2104225 2104314 -200224033 + L1M4 LINE L1 4651 4742 -1404 1727 170 3 3 chr4 2104314 2104608 -200223739 + AluJo SINE Alu 1 294 -18 510 319 42 78 chr4 2104608 2104904 -200223443 + L1M4 LINE L1 4742 5022 -1124 1046 204 25 4 chr4 2105374 2105609 -200222738 + AluSx SINE Alu 61 300 -12 1378 130 51 16 chr4 2105609 2105862 -200222485 + L1MA5 LINE L1 6037 6298 -2 2209 78 0 7 chr4 2105921 2106214 -200222133 + AluSc SINE Alu 1 291 -18 664 165 51 173 chr4 2106214 2106468 -200221879 - L1ME LINE L1 -347 5819 5597 2000 109 3 7 chr4 2106470 2106754 -200221593 - AluSg SINE Alu -14 296 14 2259 76 3 3 chr4 2106754 2107055 -200221292 - AluY SINE Alu -10 301 1 1749 155 7 17 chr4 2107059 2107356 -200220991 - AluJb SINE Alu -7 305 12 603 199 99 53 chr4 2107369 2107651 -200220696 - L1ME LINE L1 -1446 4700 4406 400 305 104 11 chr4 2107908 2108187 -200220160 - L2 LINE L2 -466 2848 2544 2050 96 4 4 chr4 2108484 2108765 -200219582 + AluSx SINE Alu 1 281 -31 195 42 0 0 chr4 2108769 2108793 -200219554 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 301 250 21 31 chr4 2108793 2108875 -200219472 + L1M4 LINE L1 3793 3875 -2271 1517 187 3 23 chr4 2108875 2109174 -200219173 + AluSx SINE Alu 1 293 -19 301 250 21 31 chr4 2109174 2109187 -200219160 + L1M4 LINE L1 3875 3887 -2259 2009 84 7 7 chr4 2109893 2110168 -200218179 - AluSx SINE Alu -12 300 26 281 26 26 0 chr4 2110186 2110224 -200218123 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1670 143 0 38 chr4 2110231 2110389 -200217958 - AluJo SINE Alu -36 276 132 2316 68 0 7 chr4 2110389 2110685 -200217662 + AluY SINE Alu 1 294 -17 1670 143 0 38 chr4 2110685 2110813 -200217534 - AluJo SINE Alu -180 132 1 2717 10 3 3 chr4 2110837 2111148 -200217199 + AluYa5 SINE Alu 1 311 0 764 69 20 0 chr4 2111157 2111259 -200217088 + AluSq/x SINE Alu 1 104 -209 2017 97 20 20 chr4 2111455 2111755 -200216592 + AluSq SINE Alu 1 300 -13 263 224 40 13 chr4 2111862 2111938 -200216409 - MLT1K LTR MaLR -63 525 448 1364 187 128 8 chr4 2112332 2112774 -200215573 + MLT1H LTR MaLR 1 541 -8 1858 112 62 0 chr4 2113277 2113553 -200214794 - AluSq SINE Alu -20 293 1 1284 189 4 60 chr4 2113554 2113742 -200214605 - AluJo SINE Alu -13 299 131 2288 59 3 3 chr4 2113742 2114029 -200214318 + AluY SINE Alu 15 301 -10 1284 189 4 60 chr4 2114029 2114121 -200214226 - AluJo SINE Alu -181 131 35 275 273 20 40 chr4 2114973 2115123 -200213224 - L2 LINE L2 -212 3060 2914 1738 104 8 8 chr4 2115326 2115576 -200212771 + AluSg SINE Alu 55 304 -6 26 30 0 0 chr4 2115635 2115668 -200212679 + AT_rich Low_complexity Low_complexity 1 33 0 208 106 21 43 chr4 2115845 2115892 -200212455 + (CCCG)n Simple_repeat Simple_repeat 2 47 0 229 195 37 24 chr4 2116430 2116512 -200211835 + Zaphod DNA AcHobo 9 91 -3940 1894 105 22 0 chr4 2117122 2117399 -200210948 + AluSp SINE Alu 13 295 -18 2166 92 0 19 chr4 2117399 2117716 -200210631 + AluY SINE Alu 1 311 0 1797 99 106 4 chr4 2117730 2118003 -200210344 + AluSx SINE Alu 1 301 -11 618 174 31 68 chr4 2118003 2118164 -200210183 + L1MA5 LINE L1 5756 5910 -390 1954 105 3 14 chr4 2118171 2118467 -200209880 - AluSg SINE Alu 0 310 18 1397 113 32 0 chr4 2118620 2118841 -200209506 - AluSq SINE Alu -85 228 1 1617 91 0 13 chr4 2118843 2119022 -200209325 - AluY SINE Alu -1 310 133 2326 38 3 14 chr4 2119022 2119332 -200209015 - AluY SINE Alu 0 311 1 1617 91 0 13 chr4 2119332 2119383 -200208964 - AluY SINE Alu -178 133 83 2013 110 0 60 chr4 2119385 2119703 -200208644 - AluSq SINE Alu -14 299 1 1307 187 56 21 chr4 2119813 2120097 -200208250 + AluJo SINE Alu 1 294 -18 438 300 8 8 chr4 2120155 2120275 -200208072 + FLAM_A SINE Alu 5 124 -9 1956 129 3 13 chr4 2120327 2120636 -200207711 + AluSg SINE Alu 1 306 -4 2263 60 30 13 chr4 2121026 2121327 -200207020 + AluSx SINE Alu 1 306 -6 429 103 0 0 chr4 2122336 2122394 -200205953 - AluJ/FLAM SINE Alu -253 59 2 292 162 88 0 chr4 2122760 2122828 -200205519 + Tigger5 DNA MER2_type 2250 2323 0 188 355 81 17 chr4 2123051 2123223 -200205124 + L2 LINE L2 2569 2751 -563 185 289 289 0 chr4 2124005 2124095 -200204252 - L2 LINE L2 0 3313 3198 197 294 128 0 chr4 2124116 2124218 -200204129 - L2 LINE L2 -875 2439 2325 533 275 54 45 chr4 2124277 2124499 -200203848 + MIR SINE MIR 7 230 -32 1382 184 0 44 chr4 2125414 2125539 -200202808 - AluJb SINE Alu -53 259 130 2126 115 0 7 chr4 2125539 2125844 -200202503 - AluSx SINE Alu -1 311 9 1382 184 0 44 chr4 2125844 2125989 -200202358 - AluJb SINE Alu -182 130 1 1956 97 39 4 chr4 2126447 2126749 -200201598 + AluSx SINE Alu 1 312 0 505 248 81 6 chr4 2126880 2127041 -200201306 - MIR SINE MIR -6 256 84 2059 105 26 10 chr4 2127076 2127380 -200200967 - AluSq SINE Alu -4 309 1 227 237 96 25 chr4 2127722 2127858 -200200489 + MER5A DNA MER1_type 1 188 -1 1230 171 93 8 chr4 2129088 2129345 -200199002 + AluJo SINE Alu 1 279 -33 777 153 15 0 chr4 2129504 2129635 -200198712 - AluSg/x SINE Alu -12 298 166 285 268 89 18 chr4 2133439 2133551 -200194796 - MLT1K LTR MaLR -2 586 467 305 282 39 0 chr4 2133628 2133706 -200194641 - MLT1K LTR MaLR -342 246 166 319 334 112 25 chr4 2133813 2134044 -200194303 + L2 LINE L2 2973 3239 -74 2045 127 10 0 chr4 2134044 2134377 -200193970 - AluSx SINE Alu 0 312 1 319 334 112 25 chr4 2134377 2134459 -200193888 + L2 LINE L2 3239 3313 0 635 215 6 0 chr4 2134459 2134631 -200193716 + (TGGA)n Simple_repeat Simple_repeat 2 174 0 790 206 6 1 chr4 2134656 2135357 -200192990 + (TGGA)n Simple_repeat Simple_repeat 1 704 0 972 198 9 5 chr4 2135390 2135836 -200192511 + (TGGA)n Simple_repeat Simple_repeat 1 448 0 372 295 94 18 chr4 2136217 2136441 -200191906 - L2 LINE L2 -229 3084 2844 286 273 161 14 chr4 2136533 2136819 -200191528 - L2 LINE L2 -739 2575 2248 205 188 0 42 chr4 2137488 2137536 -200190811 + G-rich Low_complexity Low_complexity 6 51 0 699 181 24 0 chr4 2138569 2138696 -200189651 + Tigger1 DNA MER2_type 2079 2208 -210 1030 172 17 67 chr4 2138696 2138859 -200189488 - AluJo SINE Alu -13 299 129 207 0 0 0 chr4 2138859 2138882 -200189465 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2194 78 0 0 chr4 2138882 2139165 -200189182 - AluY SINE Alu -28 283 1 1030 172 17 67 chr4 2139165 2139238 -200189109 - AluJo SINE Alu -181 131 74 425 245 86 15 chr4 2139292 2139446 -200188901 - MIR SINE MIR -83 179 16 2064 106 13 3 chr4 2139915 2140217 -200188130 - AluSg SINE Alu -5 305 1 537 176 0 42 chr4 2140224 2140343 -200188004 - FAM SINE Alu 0 185 72 327 256 34 0 chr4 2140343 2140373 -200187974 - AluJo/F(R)AM SINE Alu -78 224 196 1640 128 0 0 chr4 2140373 2140608 -200187739 - AluSx SINE Alu -77 235 1 327 256 34 0 chr4 2140608 2140678 -200187669 - AluJo/F(R)AM SINE Alu -106 196 154 2135 112 52 60 chr4 2140678 2140831 -200187516 + THE1B LTR MaLR 1 154 -210 1983 139 3 0 chr4 2140831 2141125 -200187222 + AluSg SINE Alu 1 295 -15 2135 112 52 60 chr4 2141125 2141338 -200187009 + THE1B LTR MaLR 154 364 0 12005 89 9 6 chr4 2141338 2142914 -200185433 + THE1B-int LTR MaLR 1 1580 0 2317 92 66 20 chr4 2142914 2143262 -200185085 + THE1B LTR MaLR 1 364 0 1582 120 14 58 chr4 2143491 2143766 -200184581 - AluJb SINE Alu -49 263 1 2092 121 0 0 chr4 2143793 2144082 -200184265 - AluSx SINE Alu -9 303 15 1362 139 0 9 chr4 2145233 2145449 -200182898 - AluJb SINE Alu -14 298 85 360 335 54 6 chr4 2146592 2146759 -200181588 + L2 LINE L2 3139 3313 0 213 211 57 0 chr4 2146844 2146908 -200181439 - MIR SINE MIR -69 139 70 2035 128 0 0 chr4 2147048 2147336 -200181011 + AluSx SINE Alu 4 291 -21 2002 111 26 7 chr4 2147343 2147650 -200180697 - AluSq SINE Alu 0 313 1 976 103 109 0 chr4 2147650 2147824 -200180523 + Tigger3(Golem) DNA MER2_type 2765 2957 -72 2148 86 0 10 chr4 2147928 2148220 -200180127 - AluSp SINE Alu -11 302 14 9541 116 57 124 chr4 2148224 2148574 -200179773 - Tigger1 DNA MER2_type -318 2100 1728 2107 94 0 29 chr4 2148574 2148881 -200179466 - AluSc SINE Alu -11 298 1 1520 126 0 37 chr4 2148882 2149128 -200179219 - AluSx SINE Alu -18 294 58 9541 116 57 124 chr4 2149128 2149153 -200179194 - Tigger1 DNA MER2_type -690 1728 1703 1816 103 17 17 chr4 2149153 2149443 -200178904 - AluSg1 SINE Alu -19 290 1 9541 116 57 124 chr4 2149443 2149581 -200178766 - Tigger1 DNA MER2_type -715 1703 1557 1980 115 7 7 chr4 2149581 2149867 -200178480 - AluSx SINE Alu -19 293 8 9541 116 57 124 chr4 2149867 2149913 -200178434 - Tigger1 DNA MER2_type -861 1557 1509 2273 80 3 0 chr4 2149913 2150212 -200178135 - AluY SINE Alu -9 302 3 9541 116 57 124 chr4 2150212 2150354 -200177993 - Tigger1 DNA MER2_type -909 1509 1359 793 128 0 94 chr4 2150354 2150503 -200177844 - FLAM_C SINE Alu -7 136 2 9541 116 57 124 chr4 2150503 2151707 -200176640 - Tigger1 DNA MER2_type -1059 1359 199 2159 115 0 3 chr4 2151707 2152011 -200176336 + AluSx SINE Alu 1 303 -9 9541 116 57 124 chr4 2152011 2152175 -200176172 - Tigger1 DNA MER2_type -2219 199 26 185 182 164 0 chr4 2152224 2152279 -200176068 + L2 LINE L2 3232 3295 -18 386 267 80 13 chr4 2152310 2152460 -200175887 + MER106B DNA MER1_type 896 1055 -4 363 235 0 24 chr4 2152702 2152787 -200175560 + MIR SINE MIR 50 132 -76 1863 80 0 20 chr4 2154791 2155041 -200173306 - AluSq SINE Alu -68 245 1 2447 31 0 28 chr4 2155240 2155558 -200172789 - AluY SINE Alu 0 310 1 1779 166 0 35 chr4 2155558 2155872 -200172475 - AluJb SINE Alu -9 303 1 1573 171 27 40 chr4 2156166 2156464 -200171883 + AluJb SINE Alu 1 294 -18 1376 147 9 0 chr4 2156609 2156820 -200171527 + AluJo SINE Alu 86 298 -14 209 162 54 0 chr4 2156965 2157002 -200171345 + MER5A DNA MER1_type 64 102 -87 1170 153 16 0 chr4 2158000 2158190 -200170157 - AluJb SINE Alu 0 312 120 2176 82 43 4 chr4 2159162 2159442 -200168905 + AluSc SINE Alu 14 304 -5 362 306 94 25 chr4 2159452 2159687 -200168660 + L1MC4 LINE L1 7699 7949 -93 298 211 0 0 chr4 2161702 2161754 -200166593 + MLT1C LTR MaLR 416 467 0 309 277 10 10 chr4 2161796 2161897 -200166450 + L1MC3 LINE L1 7683 7783 -2 240 294 44 50 chr4 2162161 2162311 -200166036 + MIR SINE MIR 18 166 -62 1875 151 34 0 chr4 2162927 2163219 -200165128 + AluJo SINE Alu 1 302 -10 2392 85 3 0 chr4 2163351 2163646 -200164701 + AluSp SINE Alu 1 296 -17 846 160 0 0 chr4 2163650 2163775 -200164572 - FLAM_C SINE Alu -18 125 1 822 177 15 0 chr4 2163837 2163967 -200164380 + AluSq/x SINE Alu 1 132 -180 305 375 59 8 chr4 2164013 2164269 -200164078 + L1MC4 LINE L1 6768 7036 -1006 1909 139 42 0 chr4 2164466 2164632 -200163715 - AluSx SINE Alu -13 299 115 210 37 0 0 chr4 2164632 2164659 -200163688 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1909 139 42 0 chr4 2164659 2164779 -200163568 - AluSx SINE Alu -197 115 1 355 261 68 72 chr4 2164806 2164970 -200163377 + L1MC4a LINE L1 5117 5280 -866 1569 183 73 0 chr4 2164970 2165244 -200163103 + AluJb SINE Alu 1 294 -18 2237 136 0 0 chr4 2165248 2165558 -200162789 + AluSx SINE Alu 1 310 -2 355 261 68 72 chr4 2165558 2165595 -200162752 + L1MC4a LINE L1 5283 5322 -824 862 114 46 51 chr4 2165610 2165733 -200162614 + L1MA8 LINE L1 6116 6239 -52 2207 111 0 33 chr4 2165733 2165869 -200162478 + AluSx SINE Alu 1 140 -172 2179 127 0 16 chr4 2165869 2166183 -200162164 + AluSg1 SINE Alu 1 309 0 2207 111 0 33 chr4 2166183 2166353 -200161994 + AluSx SINE Alu 140 297 -15 862 114 46 51 chr4 2166353 2166404 -200161943 + L1MA8 LINE L1 6239 6289 -2 691 284 34 30 chr4 2166445 2166741 -200161606 + L1MC4a LINE L1 5303 5599 -2209 260 249 184 40 chr4 2166891 2167087 -200161260 + L1MC4a LINE L1 5914 6163 -1645 2146 138 7 0 chr4 2167087 2167391 -200160956 - AluJb SINE Alu -6 306 1 260 249 184 40 chr4 2167391 2167471 -200160876 + L1MC4a LINE L1 6163 6230 -1578 331 176 71 188 chr4 2167838 2167940 -200160407 + L1ME3A LINE L1 5053 5165 -981 2134 122 3 3 chr4 2167940 2168235 -200160112 - AluSp SINE Alu -18 295 1 331 176 71 188 chr4 2168235 2168255 -200160092 + L1ME3A LINE L1 5165 5153 -993 2026 134 0 10 chr4 2168255 2168553 -200159794 - AluSx SINE Alu -17 295 1 331 176 71 188 chr4 2168553 2168599 -200159748 + L1ME3A LINE L1 5152 5202 -944 1151 274 114 34 chr4 2168627 2169244 -200159103 + L1ME3A LINE L1 5290 5985 -185 2417 94 3 0 chr4 2169244 2169551 -200158796 - AluSc SINE Alu -1 308 1 1151 274 114 34 chr4 2169551 2169724 -200158623 + L1ME3A LINE L1 5985 6143 -27 1311 99 6 0 chr4 2169754 2169926 -200158421 - AluSg/x SINE Alu -14 296 124 931 234 80 7 chr4 2169966 2170252 -200158095 + L1M4 LINE L1 4872 5178 -968 314 328 133 9 chr4 2170274 2170597 -200157750 + L1MCc LINE L1 -485 4294967173 -6031 253 291 53 82 chr4 2170843 2170922 -200157425 + L1MCc LINE L1 295 375 -5533 2081 116 19 35 chr4 2170922 2171232 -200157115 + AluSq SINE Alu 1 305 -8 253 291 53 82 chr4 2171232 2171358 -200156989 + L1MCc LINE L1 375 494 -5414 352 223 142 7 chr4 2171504 2171652 -200156695 + L1MCc LINE L1 1306 1465 -4961 194 159 45 0 chr4 2171706 2171750 -200156597 + GA-rich Low_complexity Low_complexity 3 48 0 1496 158 85 12 chr4 2171774 2172033 -200156314 + AluJo SINE Alu 14 291 -21 533 291 46 37 chr4 2172048 2172243 -200156104 + L1MCc LINE L1 1654 1846 -4761 2099 110 9 31 chr4 2172243 2172561 -200155786 + AluY SINE Alu 1 311 0 533 291 46 37 chr4 2172561 2172641 -200155706 + L1MCc LINE L1 1846 1924 -4683 2114 123 13 7 chr4 2172641 2172950 -200155397 + AluSx SINE Alu 1 311 -1 533 291 46 37 chr4 2172950 2173023 -200155324 + L1MCc LINE L1 1924 2006 -4601 2431 54 3 3 chr4 2173041 2173335 -200155012 - AluY SINE Alu -4 307 14 1708 171 17 38 chr4 2173359 2173703 -200154644 - MSTB LTR MaLR -49 377 41 4491 101 14 75 chr4 2173703 2174462 -200153885 - L1PA12 LINE L1 -9 6159 5447 1896 181 0 3 chr4 2174476 2174779 -200153568 - AluJb SINE Alu -10 302 1 1356 69 0 29 chr4 2174808 2174983 -200153364 - AluSx SINE Alu -142 170 1 733 149 0 41 chr4 2175034 2175155 -200153192 + FLAM_C SINE Alu 2 117 -26 452 108 0 0 chr4 2175159 2175224 -200153123 + AluJ/FRAM SINE Alu 230 294 -8 * 2044 123 131 44 chr4 2175219 2175625 -200152722 + Tigger2 DNA MER2_type 2278 2718 0 487 283 26 58 chr4 2175655 2175846 -200152501 + MIR SINE MIR 75 259 -3 815 174 84 7 chr4 2175968 2176123 -200152224 + AluJb SINE Alu 140 306 -6 319 297 14 0 chr4 2176187 2176261 -200152086 + L2 LINE L2 3198 3272 0 2227 133 0 0 chr4 2176477 2176785 -200151562 + AluSx SINE Alu 1 308 -4 297 95 0 0 chr4 2176998 2177040 -200151307 + Alu SINE Alu 254 295 -6 372 311 45 8 chr4 2177340 2177472 -200150875 + MIR SINE MIR 92 228 -34 346 230 0 58 chr4 2177530 2177617 -200150730 + AluSg/x SINE Alu 136 217 -83 824 204 14 0 chr4 2177631 2177778 -200150569 - FAM SINE Alu -36 149 1 2080 106 0 11 chr4 2177801 2178107 -200150240 + AluSg SINE Alu 3 305 0 2383 90 3 0 chr4 2178432 2178731 -200149616 + AluSx SINE Alu 2 301 -11 26 64 0 0 chr4 2179389 2179436 -200148911 + AT_rich Low_complexity Low_complexity 1 47 0 294 315 207 9 chr4 2179566 2179779 -200148568 + L2 LINE L2 2109 2363 -951 599 275 174 12 chr4 2180030 2180407 -200147940 + L2 LINE L2 2628 3060 -253 1571 97 14 0 chr4 2180945 2181152 -200147195 - AluSc SINE Alu -91 218 9 2100 93 0 83 chr4 2181250 2181434 -200146913 - AluSx SINE Alu -15 297 150 2073 125 31 0 chr4 2181434 2181721 -200146626 - AluSg SINE Alu -14 296 1 2100 93 0 83 chr4 2181721 2181860 -200146487 - AluSx SINE Alu -162 150 1 2080 126 3 7 chr4 2182500 2182801 -200145546 - AluSc SINE Alu -9 300 1 782 148 0 87 chr4 2182833 2182982 -200145365 + AluJb SINE Alu 4 139 -173 2123 122 3 40 chr4 2182990 2183311 -200145036 + AluSq SINE Alu 1 309 -4 1378 219 7 49 chr4 2183698 2183836 -200144511 + AluJo SINE Alu 6 148 -164 2268 94 0 10 chr4 2183836 2184135 -200144212 + AluSg SINE Alu 1 296 -14 1378 219 7 49 chr4 2184135 2184302 -200144045 + AluJo SINE Alu 148 298 -14 2421 79 7 0 chr4 2184403 2184706 -200143641 - AluSx SINE Alu -7 305 1 677 246 102 29 chr4 2184734 2185047 -200143300 - L1ME3A LINE L1 -273 5897 5562 1449 189 10 69 chr4 2185107 2185281 -200143066 - AluJo SINE Alu -24 288 138 2351 92 0 0 chr4 2185281 2185573 -200142774 + AluSg SINE Alu 1 292 -18 1449 189 10 69 chr4 2185573 2185704 -200142643 - AluJo SINE Alu -174 138 1 2088 201 89 99 chr4 2185715 2186370 -200141977 - L1ME1 LINE L1 -44 6122 5462 949 211 131 65 chr4 2186370 2186519 -200141828 - AluJo SINE Alu -9 293 155 1957 120 10 24 chr4 2186519 2186837 -200141510 + AluSq SINE Alu 1 314 0 949 211 131 65 chr4 2186837 2186961 -200141386 - AluJo SINE Alu -147 155 1 2088 201 89 99 chr4 2186961 2186997 -200141350 - L1ME1 LINE L1 -704 5462 5427 321 68 0 0 chr4 2186997 2187041 -200141306 + (TG)n Simple_repeat Simple_repeat 2 45 0 2040 125 4 0 chr4 2187042 2187322 -200141025 - AluSx SINE Alu -17 295 15 2088 201 89 99 chr4 2187322 2187481 -200140866 - L1ME1 LINE L1 -739 5427 5268 2331 90 7 0 chr4 2187481 2187780 -200140567 - AluSq SINE Alu -12 301 1 2088 201 89 99 chr4 2187780 2187871 -200140476 - L1ME1 LINE L1 -898 5268 5178 1998 157 3 0 chr4 2187871 2188165 -200140182 - AluSx SINE Alu -17 295 1 2088 201 89 99 chr4 2188165 2188331 -200140016 - L1ME1 LINE L1 -988 5178 5024 2092 125 6 13 chr4 2188333 2188644 -200139703 - AluSx SINE Alu -1 311 3 429 214 12 89 chr4 2188655 2188793 -200139554 - L1ME3A LINE L1 -965 5181 5057 2856 16 3 0 chr4 2188793 2189103 -200139244 - AluYa5 SINE Alu 0 311 1 429 214 12 89 chr4 2189103 2189132 -200139215 - L1ME3A LINE L1 -1089 5057 5027 2172 133 0 3 chr4 2189132 2189434 -200138913 - AluSg SINE Alu -9 301 1 1851 169 0 28 chr4 2189434 2189753 -200138594 - AluSx SINE Alu -1 311 1 466 266 38 49 chr4 2189757 2189835 -200138512 - L1ME3A LINE L1 -2274 3872 3795 2258 89 4 0 chr4 2189835 2190140 -200138207 - AluSp SINE Alu 0 309 4 2266 85 3 10 chr4 2190144 2190494 -200137853 - AluY SINE Alu 0 311 14 466 266 38 49 chr4 2190494 2190624 -200137723 - L1ME3A LINE L1 -2354 3792 3659 1281 181 17 0 chr4 2190624 2190856 -200137491 - MER46A DNA MER2_type 0 236 1 466 266 38 49 chr4 2190856 2190907 -200137440 - L1ME3A LINE L1 -2487 3659 3609 2195 227 109 66 chr4 2190922 2191236 -200137111 - L1ME3A LINE L1 -2734 3412 3113 1760 172 0 35 chr4 2191236 2191416 -200136931 - AluJo SINE Alu -2 310 144 2592 56 0 0 chr4 2191416 2191718 -200136629 - AluY SINE Alu -9 302 1 1760 172 0 35 chr4 2191718 2191856 -200136491 - AluJo SINE Alu -168 144 3 2195 227 109 66 chr4 2191856 2191941 -200136406 - L1ME3A LINE L1 -3033 3113 3033 2313 68 4 0 chr4 2191941 2192244 -200136103 - AluY SINE Alu 0 304 1 1961 151 10 3 chr4 2192251 2192555 -200135792 - AluSx SINE Alu -6 306 1 2195 227 109 66 chr4 2192555 2192591 -200135756 - L1ME3A LINE L1 -3118 3028 2995 844 208 6 24 chr4 2192591 2192759 -200135588 + FAM SINE Alu 1 165 -10 2195 227 109 66 chr4 2192759 2192781 -200135566 - L1ME3A LINE L1 -3151 2995 2975 2283 83 3 0 chr4 2192781 2193069 -200135278 - AluSc SINE Alu -4 305 17 2195 227 109 66 chr4 2193069 2193101 -200135246 - L1ME3A LINE L1 -3171 2975 2946 2029 138 51 28 chr4 2193101 2193457 -200134890 + THE1B LTR MaLR 1 364 0 2195 227 109 66 chr4 2193457 2193489 -200134858 - L1ME3A LINE L1 -3200 2946 2917 2208 113 0 3 chr4 2193489 2193790 -200134557 - AluSg SINE Alu -10 300 1 2195 227 109 66 chr4 2193790 2194392 -200133955 - L1ME3A LINE L1 -3229 2917 2226 275 173 0 19 chr4 2194739 2194791 -200133556 + Alu SINE Alu 2 52 -247 1546 172 3 107 chr4 2194904 2195015 -200133332 + AluJb SINE Alu 2 123 -179 2268 83 10 0 chr4 2195015 2195305 -200133042 - AluY SINE Alu -3 308 16 2037 115 31 0 chr4 2195313 2195600 -200132747 - AluSq SINE Alu -17 296 1 1546 172 3 107 chr4 2195600 2195615 -200132732 + AluJb SINE Alu 130 145 -157 2251 89 10 3 chr4 2195615 2195908 -200132439 - AluSc SINE Alu -14 295 1 1546 172 3 107 chr4 2195908 2196097 -200132250 + AluJb SINE Alu 145 293 -9 390 92 0 0 chr4 2196318 2196383 -200131964 - L1MC3 LINE L1 0 7785 7721 1755 149 24 24 chr4 2196383 2196712 -200131635 - MER44D DNA MER2_type 0 609 11 790 181 99 45 chr4 2196737 2196958 -200131389 - L1MD3 LINE L1 -67 7928 7696 2335 92 0 7 chr4 2197075 2197369 -200130978 + AluSc SINE Alu 1 292 -17 2091 136 13 7 chr4 2197395 2197705 -200130642 + AluSx SINE Alu 1 312 0 1189 210 5 0 chr4 2197820 2198044 -200130303 - AluJo SINE Alu -46 266 42 2042 149 7 0 chr4 2198122 2198423 -200129924 + AluSx SINE Alu 1 303 -9 289 234 9 56 chr4 2198607 2198714 -200129633 - MIR3 SINE MIR -1 207 106 894 213 0 18 chr4 2198828 2198997 -200129350 - AluJ SINE Alu 0 302 137 2201 92 58 3 chr4 2199349 2199644 -200128703 - AluSq SINE Alu -2 311 1 825 140 0 37 chr4 2200218 2200354 -200127993 - AluJ SINE Alu -181 131 1 1977 150 3 7 chr4 2200584 2200884 -200127463 - AluSx SINE Alu -13 299 1 2386 96 0 0 chr4 2200895 2201198 -200127149 - AluSx SINE Alu -9 303 1 278 310 14 0 chr4 2201448 2201519 -200126828 + MIR3 SINE MIR 114 185 -23 1707 160 11 14 chr4 2201567 2201849 -200126498 + AluJo SINE Alu 1 281 -31 2195 99 3 3 chr4 2202026 2202320 -200126027 - AluSg SINE Alu -5 305 12 2443 91 3 0 chr4 2202335 2202642 -200125705 - AluSg SINE Alu -2 308 1 669 163 114 8 chr4 2202823 2202946 -200125401 + FLAM_C SINE Alu 3 138 -5 1100 251 122 15 chr4 2202970 2203381 -200124966 + Charlie7 DNA MER1_type 409 863 -1749 1761 155 33 16 chr4 2203479 2203782 -200124565 - AluJb SINE Alu -4 308 1 1598 207 128 91 chr4 2204021 2204195 -200124152 + Charlie7 DNA MER1_type 926 1092 -1520 1571 171 30 16 chr4 2204195 2204500 -200123847 - AluJo SINE Alu -3 309 1 1598 207 128 91 chr4 2204500 2204654 -200123693 + Charlie7 DNA MER1_type 1092 1239 -1373 2190 123 7 0 chr4 2204654 2204955 -200123392 - AluSc SINE Alu -6 303 1 1598 207 128 91 chr4 2204955 2205447 -200122900 + Charlie7 DNA MER1_type 1239 1777 -835 2440 69 0 26 chr4 2205451 2205754 -200122593 - AluY SINE Alu -16 295 1 2230 84 0 4 chr4 2205754 2206029 -200122318 - AluSg SINE Alu -10 300 27 * 2372 103 7 3 chr4 2206028 2206338 -200122009 - AluY SINE Alu 0 311 1 1107 205 47 79 chr4 2206338 2206391 -200121956 + L1 LINE L1 3535 3588 -2558 2145 142 0 0 chr4 2206391 2206694 -200121653 + AluSq SINE Alu 1 303 -10 2245 70 13 61 chr4 2206694 2207007 -200121340 + AluY SINE Alu 1 298 -13 1107 205 47 79 chr4 2207007 2207139 -200121208 + L1 LINE L1 3587 3722 -2424 2333 101 0 10 chr4 2207139 2207435 -200120912 + AluSq SINE Alu 1 293 -20 1107 205 47 79 chr4 2207435 2207564 -200120783 + L1 LINE L1 3722 3854 -2292 1912 118 0 99 chr4 2207564 2207896 -200120451 + AluSx SINE Alu 2 300 -12 1107 205 47 79 chr4 2207896 2208122 -200120225 + L1 LINE L1 3854 4242 -1904 2447 103 0 0 chr4 2208122 2208434 -200119913 + AluSx SINE Alu 1 312 0 22 35 0 0 chr4 2208489 2208518 -200119829 + AT_rich Low_complexity Low_complexity 1 29 0 707 178 49 65 chr4 2208518 2208625 -200119722 + L1 LINE L1 5195 5300 -846 2414 67 0 0 chr4 2208625 2208932 -200119415 + AluY SINE Alu 2 308 0 707 178 49 65 chr4 2208932 2209008 -200119339 + L1 LINE L1 5300 5376 -770 602 231 0 8 chr4 2209009 2209143 -200119204 + AluJb SINE Alu 171 303 -9 812 183 47 26 chr4 2209146 2209328 -200119019 + L1MB4 LINE L1 5959 6136 -47 629 206 15 0 chr4 2209328 2209459 -200118888 + AluJo/FLAM SINE Alu 1 133 -169 2033 106 4 4 chr4 2209459 2209734 -200118613 + AluSp SINE Alu 38 312 -1 1663 119 0 119 chr4 2209734 2210069 -200118278 + AluY SINE Alu 2 296 -5 2446 88 0 0 chr4 2210074 2210370 -200117977 + AluSq SINE Alu 1 296 -17 812 183 47 26 chr4 2210370 2210404 -200117943 + L1MB4 LINE L1 6139 6176 -7 2414 75 0 13 chr4 2210552 2210858 -200117489 - AluY SINE Alu -9 302 1 2616 44 0 3 chr4 2210858 2211199 -200117148 - LTR10C LTR ERV1 -251 340 1 245 293 0 0 chr4 2211613 2211671 -200116676 - MIR SINE MIR -51 211 154 2173 90 7 33 chr4 2211807 2212108 -200116239 - AluSq SINE Alu -20 293 1 2133 129 0 0 chr4 2212649 2212936 -200115411 - AluSg SINE Alu -23 287 1 2445 98 0 0 chr4 2213806 2214111 -200114236 - AluY SINE Alu -6 305 1 2192 118 3 13 chr4 2214359 2214664 -200113683 - AluSx SINE Alu -10 302 1 23 0 0 0 chr4 2214782 2214805 -200113542 + AT_rich Low_complexity Low_complexity 1 23 0 865 180 180 5 chr4 2214890 2215084 -200113263 + AluSg/x SINE Alu 69 296 -13 2339 92 0 0 chr4 2215093 2215386 -200112961 + AluSx SINE Alu 1 293 -19 2085 111 57 3 chr4 2215457 2215754 -200112593 - AluSp SINE Alu 0 313 1 21 0 0 0 chr4 2215764 2215785 -200112562 + AT_rich Low_complexity Low_complexity 1 21 0 2414 88 0 10 chr4 2216053 2216359 -200111988 + AluSg1 SINE Alu 1 303 -6 265 297 148 33 chr4 2217261 2217443 -200110904 + MIR SINE MIR 53 255 -7 2253 93 41 0 chr4 2218584 2218875 -200109472 + AluSg SINE Alu 1 303 -7 1370 104 0 0 chr4 2218875 2219048 -200109299 + AluSg/x SINE Alu 134 306 -6 1546 163 3 83 chr4 2219048 2219348 -200108999 - AluJo SINE Alu -30 282 7 205 307 110 24 chr4 2219617 2219744 -200108603 + MIR3 SINE MIR 30 167 -41 669 161 0 8 chr4 2220132 2220250 -200108097 + FLAM_A SINE Alu 18 134 -8 515 205 214 12 chr4 2220396 2220694 -200107653 - L1ME LINE L1 -511 5659 5327 1187 99 0 0 chr4 2220704 2220898 -200107449 - AluY SINE Alu 0 325 132 2339 101 3 16 chr4 2220898 2221214 -200107133 - AluSx SINE Alu 0 312 1 2564 64 0 0 chr4 2221509 2221806 -200106541 - AluY SINE Alu -14 297 1 1349 122 149 9 chr4 2221905 2222127 -200106220 - AluSg1 SINE Alu -4 305 53 2018 161 7 0 chr4 2222355 2222659 -200105688 - AluSx SINE Alu -6 306 1 1906 170 0 16 chr4 2222730 2223047 -200105300 - AluJb SINE Alu 0 312 1 269 109 22 0 chr4 2223365 2223411 -200104936 + GA-rich Low_complexity Low_complexity 2 48 0 1735 178 30 3 chr4 2224020 2224324 -200104023 - AluJb SINE Alu 0 312 1 2184 95 3 7 chr4 2224733 2225089 -200103258 - AluSp SINE Alu 0 355 1 2235 109 20 0 chr4 2225089 2225393 -200102954 - AluSq SINE Alu 0 313 4 2269 110 7 0 chr4 2225396 2225695 -200102652 - AluSq SINE Alu -12 301 1 227 368 74 0 chr4 2227262 2227425 -200100922 - MIR SINE MIR -18 244 70 2334 97 0 0 chr4 2233224 2233522 -200094825 - AluSx SINE Alu -14 298 1 670 178 0 15 chr4 2233550 2233685 -200094662 - FLAM_C SINE Alu 0 133 1 2327 88 3 7 chr4 2233818 2234112 -200094235 - AluSx SINE Alu -7 305 13 1324 120 43 14 chr4 2234138 2234347 -200094000 - AluSg/x SINE Alu -2 308 94 320 260 81 16 chr4 2234348 2234471 -200093876 - L1 LINE L1 -2190 3956 3826 2140 136 0 10 chr4 2234481 2234791 -200093556 - AluSg SINE Alu -3 307 1 1537 155 200 70 chr4 2234820 2235011 -200093336 - Tigger3b DNA MER2_type -2481 547 382 1477 189 71 27 chr4 2235011 2235308 -200093039 - AluJb SINE Alu -2 310 1 1537 155 200 70 chr4 2235308 2235354 -200092993 - Tigger3b DNA MER2_type -2646 382 343 2312 103 0 25 chr4 2235354 2235674 -200092673 + AluSq SINE Alu 1 312 -1 1537 155 200 70 chr4 2235674 2235919 -200092428 - Tigger3b DNA MER2_type -2685 343 1 223 25 50 25 chr4 2235997 2236037 -200092310 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1382 109 0 0 chr4 2236044 2236219 -200092128 - AluSq SINE Alu -138 175 1 740 118 97 28 chr4 2236226 2236370 -200091977 - Tigger7 DNA MER2_type -27 2460 2307 2344 96 3 0 chr4 2236385 2236678 -200091669 - AluSg SINE Alu -15 295 2 489 148 0 0 chr4 2236700 2236781 -200091566 - FLAM SINE Alu -10 133 53 381 234 169 39 chr4 2236868 2236983 -200091364 - L1ME3A LINE L1 -300 5870 5771 2955 7 0 0 chr4 2236983 2237292 -200091055 + AluYb8 SINE Alu 1 309 -9 381 234 169 39 chr4 2237292 2237407 -200090940 - L1ME3A LINE L1 -399 5771 5610 * 757 231 77 10 chr4 2237406 2237603 -200090744 + L1 LINE L1 2831 3056 -3090 2536 55 0 3 chr4 2237603 2237896 -200090451 + AluY SINE Alu 1 292 -19 757 231 77 10 chr4 2237896 2237997 -200090350 + L1 LINE L1 3056 3149 -2997 2120 125 0 0 chr4 2237998 2238279 -200090068 + AluSx SINE Alu 1 281 -31 2425 99 0 0 chr4 2238294 2238596 -200089751 + AluSx SINE Alu 1 302 -10 2275 103 3 10 chr4 2238602 2238912 -200089435 + AluSp SINE Alu 6 313 0 2119 123 7 0 chr4 2238921 2239221 -200089126 + AluY SINE Alu 2 303 -8 451 228 106 7 chr4 2239224 2239443 -200088904 + L1 LINE L1 3299 3539 -2607 453 32 0 16 chr4 2239543 2239605 -200088742 - AluY SINE Alu -248 62 2 296 363 90 22 chr4 2239703 2240069 -200088278 - HAL1 LINE L1 -741 1766 1376 1327 174 45 74 chr4 2240080 2240342 -200088005 - MER7A DNA MER2_type -2705 333 82 2169 131 0 3 chr4 2240342 2240640 -200087707 + AluSx SINE Alu 1 297 -15 1327 174 45 74 chr4 2240640 2240687 -200087660 - MER7A DNA MER2_type -2956 82 35 325 263 64 55 chr4 2240713 2240896 -200087451 - L1MEd LINE L1 -1165 1325 1104 476 274 101 55 chr4 2241711 2242076 -200086271 - Charlie2 DNA MER1_type -77 2785 2404 1443 152 0 0 chr4 2242080 2242290 -200086057 - AluSg/x SINE Alu -20 292 83 1025 273 66 62 chr4 2242290 2242822 -200085525 - Charlie2 DNA MER1_type -443 2419 1886 2384 97 17 3 chr4 2242860 2243210 -200085137 + THE1A LTR MaLR 1 355 0 11913 74 4 10 chr4 2243210 2243686 -200084661 + THE1A-int LTR MaLR 1 478 -1102 2211 138 0 0 chr4 2243686 2243991 -200084356 - AluSx SINE Alu -7 305 1 11913 74 4 10 chr4 2243991 2245032 -200083315 + THE1A-int LTR MaLR 478 1511 -69 2505 93 6 0 chr4 2245032 2245385 -200082962 - THE1A LTR MaLR 0 355 1 11913 74 4 10 chr4 2245385 2245455 -200082892 + THE1A-int LTR MaLR 1511 1580 0 2228 107 11 22 chr4 2245457 2245813 -200082534 + THE1A LTR MaLR 3 354 -1 271 324 14 0 chr4 2246007 2246081 -200082266 - Charlie2b DNA MER1_type -2029 753 679 1250 198 124 41 chr4 2248410 2248485 -200079862 + MSTC LTR MaLR 2 69 -359 2071 127 0 0 chr4 2248485 2248777 -200079570 + AluSx SINE Alu 1 292 -20 1250 198 124 41 chr4 2248777 2249095 -200079252 + MSTC LTR MaLR 69 428 0 26 0 0 0 chr4 2249339 2249365 -200078982 + GC_rich Low_complexity Low_complexity 1 26 0 913 244 121 37 chr4 2252255 2252686 -200075661 + MLT1C LTR MaLR 1 467 0 305 314 0 12 chr4 2253621 2253707 -200074640 - L1MEc LINE L1 -4437 1959 1875 1393 94 0 62 chr4 2253740 2253754 -200074593 - AluSg/x SINE Alu 0 310 297 1331 167 27 0 chr4 2253754 2254012 -200074335 - L1MB3 LINE L1 0 6183 5919 1393 94 0 62 chr4 2254012 2254221 -200074126 - AluSg/x SINE Alu -13 297 101 1544 128 4 0 chr4 2254228 2254454 -200073893 + AluSg/x SINE Alu 67 293 -17 303 240 21 0 chr4 2255893 2255989 -200072358 - L1ME3A LINE L1 -220 5950 5853 1697 245 46 40 chr4 2256126 2256628 -200071719 - MLT1D LTR MaLR 0 505 1 206 239 0 0 chr4 2257115 2257161 -200071186 + L2 LINE L2 3208 3253 -19 351 233 33 0 chr4 2258157 2258247 -200070100 - MER20 DNA MER1_type -5 214 122 455 271 12 66 chr4 2258518 2258684 -200069663 - L2 LINE L2 -541 2773 2617 1715 189 51 33 chr4 2258756 2258841 -200069506 - L1MB3 LINE L1 -7 6176 6094 2124 95 20 20 chr4 2258841 2259145 -200069202 + AluSx SINE Alu 1 304 -8 1715 189 51 33 chr4 2259145 2259234 -200069113 - L1MB3 LINE L1 -89 6094 5699 557 336 93 3 chr4 2259234 2259523 -200068824 - L1MD1 LINE L1 -241 6001 5687 343 338 146 12 chr4 2259523 2259866 -200068481 - L2 LINE L2 -770 2544 2156 295 323 158 29 chr4 2259902 2260218 -200068129 - L2 LINE L2 -1406 1908 1552 233 300 25 0 chr4 2260960 2261040 -200067307 + MLT1H LTR MaLR 80 161 -388 269 322 96 9 chr4 2261103 2261218 -200067129 + L2 LINE L2 3185 3309 -4 3142 86 35 5 chr4 2262140 2262571 -200065776 - MLT2A1 LTR ERVL 0 444 1 2117 123 0 13 chr4 2265305 2265614 -200062733 + AluSq SINE Alu 1 305 -8 1668 228 69 61 chr4 2265617 2265658 -200062689 + L1MB5 LINE L1 5564 5603 -571 2225 68 41 7 chr4 2265658 2265953 -200062394 + AluY SINE Alu 1 305 -6 1668 228 69 61 chr4 2265953 2266504 -200061843 + L1MB5 LINE L1 5603 6161 -13 1025 152 0 39 chr4 2266517 2266695 -200061652 - FRAM SINE Alu -7 169 1 2282 106 3 3 chr4 2267428 2267740 -200060607 + AluSx SINE Alu 1 312 0 2213 116 0 0 chr4 2267752 2268053 -200060294 + AluSx SINE Alu 1 301 -11 367 369 83 23 chr4 2268233 2268612 -200059735 - L1MDa LINE L1 -3905 2635 2316 284 319 58 21 chr4 2268837 2269028 -200059319 - HAL1 LINE L1 -794 1713 1516 1982 85 12 0 chr4 2269290 2269548 -200058799 - AluSg SINE Alu -49 261 1 300 286 51 46 chr4 2269934 2270124 -200058223 + MLT1H LTR MaLR 35 239 -356 379 254 70 7 chr4 2270571 2270713 -200057634 - L1MDa LINE L1 -5926 604 454 1944 184 19 73 chr4 2271758 2272147 -200056200 - L1MB5 LINE L1 0 6174 5819 2492 62 0 0 chr4 2272147 2272453 -200055894 - AluY SINE Alu -1 310 5 1944 184 19 73 chr4 2272453 2272586 -200055761 - L1MB5 LINE L1 -355 5819 5680 210 351 84 30 chr4 2273259 2273390 -200054957 + MIR SINE MIR 19 156 -106 305 290 57 8 chr4 2273501 2273625 -200054722 - MLT1J2 LTR MaLR -191 259 130 256 302 38 28 chr4 2274046 2274152 -200054195 - MIR SINE MIR -43 219 113 808 163 0 15 chr4 2276997 2277114 -200051233 + FLAM_C SINE Alu 1 117 -195 252 0 0 0 chr4 2277114 2277142 -200051205 + (CA)n Simple_repeat Simple_repeat 2 29 0 808 163 0 15 chr4 2277142 2277159 -200051188 + FLAM_C SINE Alu 117 133 -179 21 57 0 0 chr4 2279104 2279139 -200049208 + GC_rich Low_complexity Low_complexity 1 35 0 45 75 0 22 chr4 2280334 2280468 -200047879 + GC_rich Low_complexity Low_complexity 1 131 0 1616 271 88 18 chr4 2281442 2282113 -200046234 + L2 LINE L2 1692 2409 -905 1328 277 102 17 chr4 2282292 2282761 -200045586 - MLT1J LTR MaLR -1 510 2 2238 84 20 0 chr4 2283012 2283310 -200045037 - AluSx SINE Alu -8 304 1 1388 130 57 57 chr4 2283456 2283718 -200044629 + AluJo SINE Alu 36 297 -15 871 225 11 6 chr4 2284477 2284655 -200043692 - AluJo SINE Alu -21 291 113 180 111 0 0 chr4 2284921 2284948 -200043399 + (CACCG)n Simple_repeat Simple_repeat 3 29 0 1521 139 21 107 chr4 2285798 2286135 -200042212 + AluYb8 SINE Alu 1 308 -10 755 276 174 2 chr4 2286509 2286962 -200041385 - HAL1 LINE L1 -1136 1371 841 392 312 211 19 chr4 2289907 2290735 -200037612 + L2 LINE L2 1540 2526 -788 365 268 101 0 chr4 2290721 2290859 -200037488 + L2 LINE L2 2844 2995 -318 * 2545 61 0 0 chr4 2291242 2291552 -200036795 - AluY SINE Alu -1 310 1 299 160 35 128 chr4 2292274 2292318 -200036029 + MLT1C LTR MaLR 1 47 -432 647 197 15 38 chr4 2292318 2292450 -200035897 + FLAM_A SINE Alu 1 129 -4 1826 168 3 7 chr4 2292452 2292744 -200035603 + AluJo SINE Alu 1 291 -21 2347 68 0 3 chr4 2292748 2293042 -200035305 + AluY SINE Alu 1 293 -18 299 160 35 128 chr4 2293042 2293131 -200035216 + MLT1C LTR MaLR 51 126 -353 373 363 73 12 chr4 2293134 2293393 -200034954 - L1MC/D LINE L1 -2089 5719 5445 768 190 135 6 chr4 2293399 2293562 -200034785 - AluSg/x SINE Alu -11 299 116 602 302 61 63 chr4 2293636 2294047 -200034300 - MLT1J LTR MaLR -1 510 101 343 284 0 71 chr4 2295545 2295700 -200032647 - L2 LINE L2 -544 2770 2627 480 320 90 48 chr4 2295779 2296091 -200032256 - L2 LINE L2 -923 2391 2067 208 286 18 0 chr4 2296569 2296625 -200031722 - MIR SINE MIR -63 145 89 2201 95 3 16 chr4 2296675 2296990 -200031357 + AluSx SINE Alu 1 311 -1 1230 186 19 0 chr4 2297303 2297518 -200030829 + AluJb SINE Alu 1 219 -93 636 125 158 33 chr4 2297637 2297757 -200030590 + AluJb SINE Alu 167 301 -11 228 86 0 0 chr4 2297759 2297794 -200030553 + (TA)n Simple_repeat Simple_repeat 1 35 0 744 239 119 0 chr4 2298029 2298280 -200030067 - L1MB3 LINE L1 -8 6175 5895 2360 50 0 0 chr4 2299917 2300222 -200028125 - AluY SINE Alu 0 305 1 1043 171 0 0 chr4 2300284 2300448 -200027899 + FRAM SINE Alu 1 164 -2 512 277 50 0 chr4 2300812 2300953 -200027394 - MIR SINE MIR -70 192 45 2386 61 7 0 chr4 2301507 2301801 -200026546 - AluSx SINE Alu -16 296 1 2714 7 0 0 chr4 2301806 2302105 -200026242 - AluYa5 SINE Alu -12 299 1 641 157 0 0 chr4 2302129 2302231 -200026116 + AluJ/FLAM SINE Alu 1 102 -210 474 114 0 0 chr4 2502231 2502301 -199826046 + Alu SINE Alu 234 303 -9 1272 112 6 0 chr4 2502301 2502480 -199825867 + AluSg/x SINE Alu 118 297 -15 678 292 33 30 chr4 2502568 2502869 -199825478 + L1MC4a LINE L1 5298 5599 -2209 583 314 144 14 chr4 2503015 2503215 -199825132 + L1MC4a LINE L1 5910 6157 -1651 2061 138 7 0 chr4 2503215 2503519 -199824828 - AluJb SINE Alu -6 306 1 583 314 144 14 chr4 2503519 2503595 -199824752 + L1MC4a LINE L1 6157 6222 -1586 317 324 20 7 chr4 2504320 2504468 -199823879 + (TCCA)n Simple_repeat Simple_repeat 3 152 0 205 188 0 42 chr4 2506439 2506487 -199821860 + C-rich Low_complexity Low_complexity 6 51 0 334 273 161 14 chr4 2507156 2507442 -199820905 + L2 LINE L2 2248 2575 -739 426 304 93 20 chr4 2507535 2507782 -199820565 + L2 LINE L2 2844 3108 -205 972 186 7 3 chr4 2508141 2508587 -199819760 + (TCCA)n Simple_repeat Simple_repeat 1 627 0 790 208 6 1 chr4 2508620 2509321 -199819026 + (TCCA)n Simple_repeat Simple_repeat 1 704 0 635 215 6 0 chr4 2509346 2509518 -199818829 + (TCCA)n Simple_repeat Simple_repeat 2 174 0 352 341 112 25 chr4 2509518 2509600 -199818747 - L2 LINE L2 0 3313 3239 2080 127 10 0 chr4 2509600 2509933 -199818414 + AluSx SINE Alu 1 312 0 352 341 112 25 chr4 2509933 2510164 -199818183 - L2 LINE L2 -74 3239 2973 274 282 39 0 chr4 2510271 2510349 -199817998 + MLT1K LTR MaLR 166 246 -342 256 268 89 18 chr4 2510426 2510538 -199817809 + MLT1K LTR MaLR 467 586 -2 2078 83 4 7 chr4 2514810 2515087 -199813260 - AluSx SINE Alu -11 301 26 281 26 26 0 chr4 2515105 2515143 -199813204 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1024 144 0 0 chr4 2515150 2515296 -199813051 - FRAM SINE Alu -36 140 1 21 82 0 0 chr4 2615656 2615705 -199712642 + AT_rich Low_complexity Low_complexity 1 49 0 305 233 0 14 chr4 2615745 2615818 -199712529 + MIR SINE MIR 66 137 -125 354 239 53 80 chr4 2615972 2616085 -199712262 - L2 LINE L2 -11 3302 3193 22 35 0 0 chr4 2616904 2616933 -199711414 + AT_rich Low_complexity Low_complexity 1 29 0 2466 67 0 0 chr4 2617322 2617619 -199710728 - AluY SINE Alu -14 297 1 2351 191 43 41 chr4 2617642 2617705 -199710642 - L1M4 LINE L1 -1031 5115 5054 2264 107 10 0 chr4 2617705 2618004 -199710343 + AluSg SINE Alu 1 302 -8 2351 191 43 41 chr4 2618004 2618595 -199709752 - L1M4 LINE L1 -1092 5054 4460 754 187 8 0 chr4 2618642 2618765 -199709582 + FLAM_C SINE Alu 4 127 -16 469 207 112 73 chr4 2618767 2618939 -199709408 - L1M4 LINE L1 -1718 4428 4247 2237 91 13 7 chr4 2618939 2619237 -199709110 - AluSp SINE Alu -13 300 1 1685 83 0 200 chr4 2619246 2619621 -199708726 - AluSx SINE Alu 0 302 3 1899 156 3 19 chr4 2619630 2619945 -199708402 - AluSx SINE Alu -2 310 1 344 212 106 15 chr4 2619949 2620081 -199708266 - L1MEc LINE L1 -5509 887 744 326 311 58 39 chr4 2620246 2620452 -199707895 - L2 LINE L2 -20 3293 3084 1927 102 51 17 chr4 2620521 2620815 -199707532 + AluSq SINE Alu 1 304 -9 517 245 38 43 chr4 2621112 2621296 -199707051 - LTR41 LTR ERVL -590 183 1 376 310 120 37 chr4 2621448 2621748 -199706599 - L2 LINE L2 -512 2802 2478 2147 131 0 7 chr4 2621935 2622240 -199706107 + AluJb SINE Alu 7 309 -3 1648 215 19 25 chr4 2622511 2622878 -199705469 - MLT1A1 LTR MaLR 0 365 1 2401 62 3 7 chr4 2623136 2623426 -199704921 - AluSc SINE Alu -20 289 1 1750 108 123 4 chr4 2624132 2624401 -199703946 - AluSx SINE Alu -1 301 1 37 23 0 0 chr4 2624630 2624674 -199703673 + AT_rich Low_complexity Low_complexity 1 44 0 779 179 8 0 chr4 2624674 2624797 -199703550 - FLAM_C SINE Alu -9 124 1 1354 163 106 12 chr4 2624843 2625088 -199703259 - AluJb SINE Alu -44 268 1 2022 145 10 0 chr4 2625674 2625978 -199702369 - AluJb SINE Alu -5 307 1 194 307 120 7 chr4 2626798 2626948 -199701399 - MIR SINE MIR 0 262 96 2014 132 35 0 chr4 2627113 2627401 -199700946 - AluSg SINE Alu -11 299 2 2173 106 3 39 chr4 2627529 2627698 -199700649 - AluSg SINE Alu -10 300 145 2486 74 0 0 chr4 2627698 2627995 -199700352 - AluY SINE Alu -14 297 1 2173 106 3 39 chr4 2627995 2628136 -199700211 - AluSg SINE Alu -165 145 1 1643 159 78 3 chr4 2628322 2628605 -199699742 + AluJo SINE Alu 1 304 -8 2147 66 92 0 chr4 2628806 2629079 -199699268 - AluY SINE Alu -13 298 1 304 247 0 14 chr4 2629113 2629186 -199699161 - L1ME4a LINE L1 -7 6114 6043 2538 64 0 3 chr4 2629802 2630100 -199698247 + AluY SINE Alu 1 297 -14 331 284 199 0 chr4 2630486 2630687 -199697660 + MIR SINE MIR 22 262 0 213 242 106 0 chr4 2630698 2630764 -199697583 + MIR SINE MIR 111 183 -79 923 126 0 38 chr4 2631958 2632117 -199696230 - MSTC LTR MaLR -51 377 225 1436 169 97 29 chr4 2632237 2632515 -199695832 + AluJb SINE Alu 3 299 -13 2472 86 0 3 chr4 2633067 2633380 -199694967 + AluSx SINE Alu 1 312 0 247 287 54 30 chr4 2633490 2633561 -199694786 + L1MEd LINE L1 278 346 -6026 2328 90 0 3 chr4 2633561 2633860 -199694487 + AluSq SINE Alu 1 298 -15 247 287 54 30 chr4 2633860 2633955 -199694392 + L1MEd LINE L1 346 448 -5924 307 305 125 38 chr4 2634123 2634490 -199693857 + L1MEd LINE L1 686 1084 -5288 321 347 67 21 chr4 2634570 2634763 -199693584 + L1MEd LINE L1 1302 1477 -4907 420 320 33 62 chr4 2634833 2635077 -199693270 - L1MC4 LINE L1 -48 7994 7758 2097 182 73 137 chr4 2635232 2635518 -199692829 - Charlie1 DNA MER1_type 0 2761 2458 2068 89 0 19 chr4 2635518 2635789 -199692558 - AluSq SINE Alu -47 266 1 2097 182 73 137 chr4 2635789 2635996 -199692351 - Charlie1 DNA MER1_type -303 2458 2239 1911 123 0 53 chr4 2635996 2636314 -199692033 - AluSc SINE Alu -8 301 1 2097 182 73 137 chr4 2636314 2636770 -199691577 - Charlie1 DNA MER1_type -522 2239 1872 2102 125 0 0 chr4 2637000 2637279 -199691068 + AluJb SINE Alu 5 283 -29 26 50 0 0 chr4 2637298 2637338 -199691009 + AT_rich Low_complexity Low_complexity 1 40 0 217 232 146 66 chr4 2637655 2637806 -199690541 + MIR SINE MIR 81 243 -19 2272 113 0 3 chr4 2640636 2640945 -199687402 + AluSx SINE Alu 5 312 0 805 235 11 0 chr4 2641089 2641268 -199687079 + AluJo SINE Alu 8 188 -124 2295 77 3 39 chr4 2641269 2641580 -199686767 + AluY SINE Alu 1 300 -11 1684 58 0 19 chr4 2641990 2642198 -199686149 - AluY SINE Alu -12 299 96 321 161 0 0 chr4 2642597 2642653 -199685694 - L1MB8 LINE L1 -30 6148 6093 745 175 60 22 chr4 2642656 2642839 -199685508 - L1MB4 LINE L1 0 6180 5991 308 316 71 26 chr4 2642895 2643050 -199685297 - L1MC5 LINE L1 -473 7488 7327 216 0 0 0 chr4 2644294 2644318 -199684029 + (TG)n Simple_repeat Simple_repeat 1 24 0 2350 112 0 0 chr4 2644770 2645082 -199683265 - AluSx SINE Alu 0 312 1 248 180 49 0 chr4 2645249 2645310 -199683037 + T-rich Low_complexity Low_complexity 3 66 0 2333 108 0 7 chr4 2645415 2645722 -199682625 - AluSx SINE Alu -7 305 1 2354 84 3 3 chr4 2646397 2646695 -199681652 - AluSp SINE Alu -15 298 1 340 156 0 47 chr4 2647374 2647438 -199680909 - AluJ/FLAM SINE Alu -241 61 1 184 233 0 100 chr4 2647585 2647645 -199680702 - MIR3 SINE MIR -12 196 143 1976 157 0 3 chr4 2648341 2648641 -199679706 + AluJo SINE Alu 1 299 -13 1884 174 10 0 chr4 2648641 2648934 -199679413 + AluJo SINE Alu 1 297 -15 3649 135 8 8 chr4 2649013 2649540 -199678807 + MER1A DNA MER1_type 1 527 0 1810 138 70 54 chr4 2650258 2650299 -199678048 - THE1C LTR MaLR 0 375 336 2271 111 7 0 chr4 2650299 2650605 -199677742 + AluSp SINE Alu 1 308 -5 1810 138 70 54 chr4 2650605 2650932 -199677415 - THE1C LTR MaLR -39 336 1 2356 116 138 5 chr4 2651623 2652001 -199676346 - MSTA LTR MaLR 0 428 1 2383 96 0 0 chr4 2652688 2652991 -199675356 - AluSc SINE Alu -6 303 1 455 196 29 20 chr4 2653138 2653240 -199675107 - MLT1C LTR MaLR -42 425 323 963 150 40 93 chr4 2653472 2653698 -199674649 - AluSg/x SINE Alu -14 298 85 306 229 123 0 chr4 2653927 2654049 -199674298 - L1M4 LINE L1 -1581 4565 4429 482 265 118 80 chr4 2654181 2654678 -199673669 - L1M4 LINE L1 -1872 4274 3797 282 95 0 0 chr4 2654678 2654720 -199673627 + (TG)n Simple_repeat Simple_repeat 2 43 0 482 265 118 80 chr4 2654720 2654743 -199673604 - L1M4 LINE L1 -2349 3797 3776 1293 182 3 83 chr4 2654743 2654902 -199673445 - AluJo SINE Alu -24 288 165 1654 158 11 11 chr4 2654902 2655187 -199673160 + AluJo SINE Alu 1 285 -27 1293 182 3 83 chr4 2655187 2655340 -199673007 - AluJo SINE Alu -147 165 1 482 265 118 80 chr4 2655340 2655479 -199672868 - L1M4 LINE L1 -2370 3776 3589 321 215 0 0 chr4 2655935 2656000 -199672347 - Charlie8 DNA MER1_type -2249 168 104 2037 114 0 3 chr4 2656142 2656440 -199671907 + AluSx SINE Alu 4 300 -12 186 361 118 14 chr4 2656623 2656767 -199671580 + L2 LINE L2 3095 3253 -19 298 302 102 34 chr4 2657344 2657549 -199670798 - MIR SINE MIR 0 262 44 2173 99 0 0 chr4 2658002 2658305 -199670042 - AluSx SINE Alu -9 303 1 229 222 0 63 chr4 2660675 2660738 -199667609 + MIR SINE MIR 85 143 -65 2279 92 0 0 chr4 2661155 2661461 -199666886 + AluY SINE Alu 1 306 -5 2062 116 0 0 chr4 2662938 2663249 -199665098 + AluSx SINE Alu 1 311 0 1916 198 82 140 chr4 2663382 2663809 -199664538 - L1ME LINE L1 -1008 5949 5499 2296 78 10 3 chr4 2663809 2664117 -199664230 - AluSg SINE Alu 0 310 1 1916 198 82 140 chr4 2664117 2664743 -199663604 - L1ME LINE L1 -1458 5499 4957 1435 172 21 81 chr4 2664749 2665081 -199663266 - AluJo SINE Alu 0 312 1 932 85 0 0 chr4 2665100 2665230 -199663117 - AluY SINE Alu -11 300 171 2944 245 85 32 chr4 2665230 2666318 -199662029 - L1ME LINE L1 -1976 4981 3837 573 260 12 0 chr4 2666293 2666462 -199661885 - L1ME LINE L1 -3372 3585 3415 * 563 191 24 15 chr4 2666506 2666618 -199661729 - MLT1A1 LTR MaLR -272 93 1 937 243 122 4 chr4 2666625 2667007 -199661340 - L1ME LINE L1 -3549 3408 3009 235 182 18 0 chr4 2667052 2667107 -199661240 - L1ME LINE L1 -4302 2836 2781 1497 214 10 3 chr4 2667161 2667456 -199660891 - AluJo SINE Alu -5 297 1 2145 108 10 0 chr4 2667468 2667765 -199660582 - AluSx SINE Alu -12 300 1 305 256 83 48 chr4 2667765 2667995 -199660352 - L1ME LINE L1 -4343 2795 2558 270 176 0 0 chr4 2668023 2668074 -199660273 + CT-rich Low_complexity Low_complexity 2 52 0 1982 153 0 3 chr4 2668085 2668398 -199659949 - AluSx SINE Alu 0 312 1 302 227 193 20 chr4 2668437 2668587 -199659760 - L1ME LINE L1 -4602 2536 2361 1873 115 31 0 chr4 2668600 2668887 -199659460 + AluSx SINE Alu 11 306 -6 574 202 62 0 chr4 2668895 2669024 -199659323 - L1MC1 LINE L1 -14 6319 6183 544 180 25 33 chr4 2669025 2669147 -199659200 - MER67B LTR ERV1 -463 198 78 1172 263 96 40 chr4 2669187 2669715 -199658632 - L1ME LINE L1 -4868 1987 1544 1871 147 0 23 chr4 2669715 2670015 -199658332 - AluJb SINE Alu -19 293 1 1172 263 96 40 chr4 2670015 2670314 -199658033 - L1ME LINE L1 -5311 1544 1263 308 285 84 28 chr4 2670786 2670965 -199657382 - L1ME LINE L1 -6660 199 11 733 191 32 0 chr4 2673974 2674100 -199654247 + FLAM_C SINE Alu 2 131 -12 2027 251 20 23 chr4 2674270 2674868 -199653479 - L1MCa LINE L1 -3279 3147 2552 7855 186 39 48 chr4 2674877 2675908 -199652439 - L1MB3 LINE L1 -5 6178 5139 2382 61 3 0 chr4 2675908 2676201 -199652146 + AluY SINE Alu 1 294 -17 7855 186 39 48 chr4 2676201 2676651 -199651696 - L1MB3 LINE L1 -1044 5139 4686 262 0 26 26 chr4 2676651 2676690 -199651657 + (TTTTG)n Simple_repeat Simple_repeat 5 43 0 7855 186 39 48 chr4 2676690 2676706 -199651641 - L1MB3 LINE L1 -1497 4686 4671 2256 77 0 7 chr4 2676706 2677006 -199651341 + AluY SINE Alu 1 298 -13 7855 186 39 48 chr4 2677006 2677239 -199651108 - L1MB3 LINE L1 -1512 4671 4437 1707 120 53 0 chr4 2677239 2677531 -199650816 - AluY SINE Alu 0 306 1 7855 186 39 48 chr4 2677531 2677608 -199650739 - L1MB3 LINE L1 -1746 4437 4361 2307 89 0 0 chr4 2677608 2677910 -199650437 - AluSx SINE Alu -10 302 1 7855 186 39 48 chr4 2677910 2678619 -199649728 - L1MB3 LINE L1 -1822 4361 3647 2217 85 16 0 chr4 2678619 2678926 -199649421 - AluSp SINE Alu -1 312 1 7855 186 39 48 chr4 2678926 2679109 -199649238 - L1MB3 LINE L1 -2536 3647 3512 2127 117 0 3 chr4 2679109 2679408 -199648939 - AluSx SINE Alu -14 298 1 7855 186 39 48 chr4 2679408 2679571 -199648776 - L1MB3 LINE L1 -2671 3512 3349 1518 170 3 55 chr4 2679572 2679884 -199648463 - AluJo SINE Alu -16 296 1 2145 106 0 0 chr4 2679897 2680189 -199648158 - AluSx SINE Alu -20 292 1 879 161 11 33 chr4 2680221 2680401 -199647946 - FRAM SINE Alu 0 176 1 1093 215 43 70 chr4 2680402 2680685 -199647662 - L1MB3 LINE L1 -2810 3336 3070 1502 146 16 59 chr4 2680685 2681006 -199647341 - AluJb SINE Alu 0 312 6 1093 215 43 70 chr4 2681006 2681191 -199647156 - L1MB3 LINE L1 -3076 3070 2881 2326 83 0 0 chr4 2681220 2681521 -199646826 - AluY SINE Alu 0 311 11 784 197 0 0 chr4 2681573 2681705 -199646642 - FLAM_A SINE Alu -5 137 6 2274 230 101 71 chr4 2681709 2682532 -199645815 - L1MCa LINE L1 -3934 2492 1695 2063 117 7 0 chr4 2682532 2682840 -199645507 - AluSx SINE Alu -2 310 1 2274 230 101 71 chr4 2682840 2683384 -199644963 - L1MCa LINE L1 -4731 1695 888 432 282 156 26 chr4 2683434 2683895 -199644452 - L1MEd LINE L1 -5002 1117 597 443 302 83 16 chr4 2685584 2685776 -199642571 - L2 LINE L2 -9 3304 3100 662 228 217 11 chr4 2686558 2686747 -199641600 - MIR SINE MIR -7 255 28 253 309 186 5 chr4 2686864 2687068 -199641279 + L2 LINE L2 2533 2773 -541 190 313 57 47 chr4 2687613 2687824 -199640523 - L2 LINE L2 -216 3056 2844 398 280 10 0 chr4 2687858 2687958 -199640389 - L2 LINE L2 -557 2757 2657 756 200 61 22 chr4 2689613 2689793 -199638554 + MIR SINE MIR 74 260 -2 1266 147 0 10 chr4 2690475 2690679 -199637668 - AluSq SINE Alu -27 286 85 299 239 14 0 chr4 2690845 2690916 -199637431 + L1MC4 LINE L1 6941 7012 -1030 805 96 0 26 chr4 2690932 2691047 -199637300 + FLAM_C SINE Alu 29 140 -3 416 348 92 60 chr4 2691057 2691339 -199637008 + L1MC4a LINE L1 7021 7292 -516 2081 125 68 3 chr4 2691339 2691691 -199636656 - THE1C LTR MaLR 0 375 1 416 348 92 60 chr4 2691691 2692027 -199636320 + L1MC4a LINE L1 7292 7592 -216 250 281 0 16 chr4 2692087 2692151 -199636196 + GA-rich Low_complexity Low_complexity 2 64 0 756 184 0 0 chr4 2692164 2692289 -199636058 + FLAM_C SINE Alu 1 125 -18 1636 105 124 15 chr4 2692294 2692561 -199635786 - AluSg SINE Alu -14 296 1 257 271 133 38 chr4 2692587 2692797 -199635550 + L1MC4 LINE L1 7811 8040 -2 2204 111 3 0 chr4 2693504 2693810 -199634537 - AluSg SINE Alu -3 307 1 1310 161 173 4 chr4 2695030 2695300 -199633047 + AluJo SINE Alu 1 311 0 21 36 0 0 chr4 2695549 2695577 -199632770 + AT_rich Low_complexity Low_complexity 1 28 0 1052 135 12 18 chr4 2696436 2696606 -199631741 + AluSg/x SINE Alu 121 289 -21 1063 173 0 0 chr4 2698196 2698375 -199629972 - AluJb SINE Alu -68 244 66 222 91 0 0 chr4 2699002 2699035 -199629312 + (GGA)n Simple_repeat Simple_repeat 1 33 0 1898 110 14 21 chr4 2699924 2700214 -199628133 + AluSx SINE Alu 1 288 -24 3921 249 104 36 chr4 2700265 2701024 -199627323 - L1MC4 LINE L1 -80 7962 7256 2148 92 17 0 chr4 2701024 2701317 -199627030 - AluSp SINE Alu -15 298 1 3921 249 104 36 chr4 2701317 2702189 -199626158 - L1MC4 LINE L1 -786 7256 6220 967 264 64 94 chr4 2702262 2702487 -199625860 - L1MC4 LINE L1 -797 5349 5119 2055 145 0 0 chr4 2702487 2702790 -199625557 - AluSx SINE Alu -7 305 3 967 264 64 94 chr4 2702790 2702929 -199625418 - L1MC4 LINE L1 -1027 5119 4977 1972 136 0 27 chr4 2702929 2703223 -199625124 + AluJo SINE Alu 3 288 -24 2252 102 10 0 chr4 2703231 2703526 -199624821 + AluSc SINE Alu 1 298 -11 1998 169 3 0 chr4 2703530 2703831 -199624516 + AluSx SINE Alu 1 302 -10 967 264 64 94 chr4 2703831 2704160 -199624187 - L1MC4 LINE L1 -1179 4967 4630 2383 88 3 0 chr4 2704160 2704456 -199623891 - AluY SINE Alu -14 297 1 967 264 64 94 chr4 2704456 2704821 -199623526 - L1MC4 LINE L1 -1516 4630 4256 1894 150 6 29 chr4 2704821 2705134 -199623213 - AluJo SINE Alu -6 306 1 967 264 64 94 chr4 2705134 2705178 -199623169 - L1MC4 LINE L1 -1890 4256 4212 1738 183 13 13 chr4 2705178 2705479 -199622868 + AluJo SINE Alu 9 309 -3 967 264 64 94 chr4 2705479 2705530 -199622817 - L1MC4 LINE L1 -1934 4212 4161 2408 103 3 0 chr4 2705530 2705842 -199622505 - AluSp SINE Alu 0 313 1 967 264 64 94 chr4 2705842 2706098 -199622249 - L1MC4 LINE L1 -1985 4161 3899 2009 115 0 21 chr4 2706098 2706385 -199621962 + AluSx SINE Alu 14 294 -18 967 264 64 94 chr4 2706385 2706644 -199621703 - L1MC4 LINE L1 -2247 3899 3634 1349 142 47 91 chr4 2706644 2706953 -199621394 + MER33 DNA MER1_type 1 295 -2290 2043 111 0 108 chr4 2706953 2707297 -199621050 - AluSx SINE Alu -5 307 1 1349 142 47 91 chr4 2707297 2707326 -199621021 + MER33 DNA MER1_type 295 324 0 967 264 64 94 chr4 2707326 2707366 -199620981 - L1MC4 LINE L1 -2512 3634 3594 2011 138 3 0 chr4 2707366 2707672 -199620675 - AluSq SINE Alu 0 307 1 967 264 64 94 chr4 2707672 2707695 -199620652 - L1MC4 LINE L1 -2552 3594 3572 2235 114 0 9 chr4 2707695 2708011 -199620336 - AluSq SINE Alu 0 313 1 967 264 64 94 chr4 2708011 2708673 -199619674 - L1MC4 LINE L1 -2574 3572 2892 2104 89 14 11 chr4 2708673 2708979 -199619368 + AluSg SINE Alu 1 307 0 967 264 64 94 chr4 2708979 2709410 -199618937 - L1MC4 LINE L1 -3254 2892 2450 2414 97 0 0 chr4 2709410 2709720 -199618627 - AluSg SINE Alu 0 310 1 967 264 64 94 chr4 2709720 2709740 -199618607 - L1MC4 LINE L1 -3696 2450 2431 1787 183 0 13 chr4 2709740 2710052 -199618295 - AluJb SINE Alu -4 308 1 967 264 64 94 chr4 2710052 2710095 -199618252 - L1MC4 LINE L1 -3715 2431 2388 2594 59 0 3 chr4 2710095 2710400 -199617947 - AluY SINE Alu -7 304 1 967 264 64 94 chr4 2710400 2710566 -199617781 - L1MC4 LINE L1 -3758 2388 2219 2335 97 0 0 chr4 2710566 2710888 -199617459 - AluSx SINE Alu 0 312 1 967 264 64 94 chr4 2710888 2710915 -199617432 - L1MC4 LINE L1 -3927 2219 2905 1920 121 81 0 chr4 2710915 2711188 -199617159 + AluSx SINE Alu 1 295 -17 967 264 64 94 chr4 2711188 2711413 -199616934 - L1MC4 LINE L1 -3240 2906 2676 260 222 0 16 chr4 2711448 2711511 -199616836 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 22 0 0 0 chr4 2712043 2712065 -199616282 + AT_rich Low_complexity Low_complexity 1 22 0 2372 99 0 7 chr4 2712069 2712371 -199615976 + AluSx SINE Alu 1 300 -12 2410 78 0 3 chr4 2712375 2712669 -199615678 + AluSc SINE Alu 3 295 -14 1800 163 50 0 chr4 2714429 2714711 -199613636 + AluJb SINE Alu 1 296 -16 331 253 234 7 chr4 2715645 2715799 -199612548 + MER5A DNA MER1_type 1 189 0 2170 123 3 0 chr4 2715924 2716224 -199612123 - AluSx SINE Alu -11 301 1 1888 161 14 0 chr4 2716226 2716512 -199611835 - AluSx SINE Alu -6 306 17 2213 115 0 10 chr4 2716559 2716864 -199611483 + AluSx SINE Alu 1 302 -10 1043 131 0 13 chr4 2716868 2717021 -199611326 + FRAM SINE Alu 13 163 -13 1410 90 0 6 chr4 2717024 2717201 -199611146 - AluSq SINE Alu -135 178 3 293 251 101 52 chr4 2717232 2717559 -199610788 + L1ME3 LINE L1 2938 3280 -2866 388 212 93 34 chr4 2717568 2717686 -199610661 + L1MC5 LINE L1 7807 7931 -30 1750 151 28 14 chr4 2717695 2717980 -199610367 + AluJb SINE Alu 3 291 -21 238 296 116 73 chr4 2718008 2718447 -199609900 + L1ME3 LINE L1 3292 3749 -2397 862 123 0 0 chr4 2718450 2718564 -199609783 + AluSp/q SINE Alu 175 288 -25 337 243 57 64 chr4 2718566 2718706 -199609641 + L1ME3 LINE L1 3710 3848 -2298 2315 85 20 0 chr4 2718712 2719007 -199609340 + AluSp SINE Alu 1 301 -12 303 93 0 0 chr4 2719011 2719054 -199609293 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 1679 161 3 25 chr4 2719057 2719343 -199609004 - AluJb SINE Alu -32 280 1 1873 169 10 0 chr4 2719622 2719912 -199608435 + AluJo SINE Alu 5 297 -15 285 323 62 13 chr4 2719912 2720138 -199608209 + L1ME3 LINE L1 4322 4558 -1588 1590 181 26 36 chr4 2720139 2720279 -199608068 + AluJo SINE Alu 1 141 -171 2706 49 0 0 chr4 2720279 2720585 -199607762 + AluY SINE Alu 1 306 -5 1590 181 26 36 chr4 2720585 2720748 -199607599 + AluJo SINE Alu 141 301 -11 316 306 20 41 chr4 2720890 2721037 -199607310 + L1ME3 LINE L1 5497 5629 -533 312 285 73 61 chr4 2721127 2721292 -199607055 + L1ME3 LINE L1 5804 5970 -192 575 220 55 0 chr4 2722089 2722198 -199606149 - AluJb SINE Alu -195 117 3 2332 82 0 3 chr4 2722235 2722528 -199605819 + AluY SINE Alu 1 292 -19 2228 97 10 3 chr4 2722540 2722830 -199605517 + AluSg1 SINE Alu 1 292 -17 862 103 58 17 chr4 2722831 2723005 -199605342 - LOR1-int LTR ERV1 -2144 4187 4007 896 171 57 0 chr4 2723039 2723197 -199605150 - AluJb SINE Alu -2 310 144 987 155 123 40 chr4 2723206 2723483 -199604864 - LOR1-int LTR ERV1 -3653 4467 4168 501 235 11 74 chr4 2723501 2723786 -199604561 - LOR1-int LTR ERV1 -1907 2973 2707 837 178 40 7 chr4 2723801 2723953 -199604394 + FRAM SINE Alu 1 151 -25 2117 121 0 29 chr4 2724102 2724417 -199603930 - AluSq SINE Alu -7 306 1 22 0 0 0 chr4 2724424 2724446 -199603901 + AT_rich Low_complexity Low_complexity 1 22 0 207 162 0 0 chr4 2724447 2724484 -199603863 + (TA)n Simple_repeat Simple_repeat 2 38 0 1425 134 13 22 chr4 2724491 2724715 -199603632 + AluJo SINE Alu 88 309 -3 610 219 38 104 chr4 2724724 2724952 -199603395 + LTR56 LTR ERV1 58 265 -180 1612 169 6 60 chr4 2724952 2725125 -199603222 - AluJb SINE Alu -15 297 147 2489 70 3 6 chr4 2725125 2725437 -199602910 - AluY SINE Alu 0 311 1 1612 169 6 60 chr4 2725437 2725577 -199602770 - AluJb SINE Alu -165 147 1 610 219 38 104 chr4 2725577 2725635 -199602712 + LTR56 LTR ERV1 265 325 -120 1974 121 3 65 chr4 2725887 2726210 -199602137 + AluSq SINE Alu 1 303 -10 2393 72 7 0 chr4 2726218 2726508 -199601839 + AluSc SINE Alu 1 292 -17 352 271 122 0 chr4 2726875 2726982 -199601365 + MER34B LTR ERV1 5 124 -441 240 108 54 0 chr4 2727130 2727167 -199601180 - FLAM_C SINE Alu 0 170 132 2119 88 51 17 chr4 2727180 2727475 -199600872 - AluSp SINE Alu -8 305 1 551 183 125 17 chr4 2727490 2727610 -199600737 - FLAM_C SINE Alu 0 133 1 1772 154 3 32 chr4 2728139 2728227 -199600120 - AluJb SINE Alu -1 311 222 3992 181 56 1 chr4 2728227 2728923 -199599424 + MER50 LTR ERV1 1 734 0 1772 154 3 32 chr4 2728923 2729146 -199599201 - AluJb SINE Alu -90 222 9 1627 169 17 24 chr4 2729154 2729450 -199598897 - AluJb SINE Alu -18 294 1 326 302 93 14 chr4 2729480 2729619 -199598728 + LTR49-int LTR ERV1 1528 1677 -4654 2333 95 0 0 chr4 2729651 2729947 -199598400 + AluY SINE Alu 1 296 -15 1246 136 23 0 chr4 2729968 2730145 -199598202 + AluSg/x SINE Alu 116 296 -16 2383 109 3 0 chr4 2730157 2730468 -199597879 + AluSq SINE Alu 1 312 -1 959 141 20 0 chr4 2730470 2730619 -199597728 + AluYa8 SINE Alu 139 290 -20 781 138 0 0 chr4 2730619 2730728 -199597619 - AluJb SINE Alu -202 110 2 232 148 49 49 chr4 2730728 2730789 -199597558 - LTR56 LTR ERV1 -384 61 1 226 303 59 0 chr4 2732131 2732250 -199596097 - L2 LINE L2 -716 2598 2473 1142 181 70 31 chr4 2733338 2733565 -199594782 - MER46A DNA MER2_type 0 236 1 1526 235 163 10 chr4 2733631 2734145 -199594202 + L1M4b LINE L1 632 1224 -5635 322 163 23 58 chr4 2734170 2734256 -199594091 + L1M4b LINE L1 1668 1750 -5210 255 204 0 0 chr4 2734264 2734318 -199594029 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 2030 139 0 0 chr4 2734327 2734608 -199593739 - AluSx SINE Alu -31 281 1 751 245 58 0 chr4 2734623 2734864 -199593483 + L1M4b LINE L1 1702 1956 -4899 * 795 227 146 18 chr4 2734863 2735198 -199593149 + L1M4b LINE L1 3826 4203 -2754 1473 217 8 42 chr4 2735198 2735560 -199592787 - MLT1A1 LTR MaLR 0 365 1 2860 208 53 20 chr4 2735560 2736294 -199592053 + L1M4b LINE L1 4199 4956 -2001 1936 100 8 0 chr4 2736295 2736545 -199591802 + AluSg SINE Alu 44 295 -15 2323 82 0 26 chr4 2736549 2736854 -199591493 + AluY SINE Alu 1 297 -14 17749 77 19 24 chr4 2736860 2739108 -199589239 + HERVL LTR ERVL 2875 5134 -520 2386 71 3 10 chr4 2739108 2739405 -199588942 + AluY SINE Alu 1 295 -16 17749 77 19 24 chr4 2739405 2739860 -199588487 + HERVL LTR ERVL 5134 5485 -169 2132 100 13 17 chr4 2739860 2740161 -199588186 + AluSq SINE Alu 1 300 -13 17749 77 19 24 chr4 2740161 2740331 -199588016 + HERVL LTR ERVL 5485 5654 0 3378 49 30 5 chr4 2740333 2740764 -199587583 + MLT2A1 LTR ERVL 3 444 0 2232 99 7 30 chr4 2747413 2747580 -199580767 - AluSq SINE Alu -16 297 139 2405 61 0 51 chr4 2747580 2747891 -199580456 - AluY SINE Alu -16 295 1 2232 99 7 30 chr4 2747891 2748026 -199580321 - AluSq SINE Alu -174 139 2 1983 138 20 3 chr4 2748028 2748325 -199580022 - AluJb SINE Alu -10 302 1 757 136 0 32 chr4 2748378 2748503 -199579844 - FLAM_A SINE Alu -11 122 2 1361 229 87 33 chr4 2748568 2749003 -199579344 + MLT1C LTR MaLR 1 467 0 1730 184 32 0 chr4 2749054 2749336 -199579011 - AluJb SINE Alu -21 291 1 356 0 23 0 chr4 2749631 2749675 -199578672 + (TTA)n Simple_repeat Simple_repeat 2 46 0 753 218 0 0 chr4 2749675 2749808 -199578539 - AluJo/FRAM SINE Alu -27 285 153 387 138 31 0 chr4 2749808 2749873 -199578474 + AluJb SINE Alu 211 277 -25 572 118 0 32 chr4 2749913 2750006 -199578341 - FLAM_A SINE Alu -8 134 45 361 182 0 0 chr4 2750675 2750741 -199577606 - MLT1C LTR MaLR -10 457 392 1981 94 19 11 chr4 2750743 2751008 -199577339 + AluJo SINE Alu 21 287 -25 180 111 0 0 chr4 2751008 2751035 -199577312 + (GGGGA)n Simple_repeat Simple_repeat 4 30 0 247 109 0 55 chr4 2751037 2751058 -199577289 + (GAAAA)n Simple_repeat Simple_repeat 3 24 -30 2254 103 3 3 chr4 2751058 2751368 -199576979 + AluSg SINE Alu 1 310 0 247 109 0 55 chr4 2751368 2751401 -199576946 + (GAAAA)n Simple_repeat Simple_repeat 24 54 0 1595 162 0 87 chr4 2752002 2752335 -199576012 + AluJo SINE Alu 7 310 -2 2049 142 0 16 chr4 2752392 2752674 -199575673 + AluJo SINE Alu 2 301 -11 22 0 0 0 chr4 2752674 2752696 -199575651 + AT_rich Low_complexity Low_complexity 1 22 0 2049 142 0 16 chr4 2752696 2752708 -199575639 + AluJo SINE Alu 301 312 0 280 322 35 35 chr4 2753161 2753323 -199575024 + L1ME4a LINE L1 5896 6091 -30 21 36 0 0 chr4 2753323 2753351 -199574996 + AT_rich Low_complexity Low_complexity 1 28 0 280 322 35 35 chr4 2753351 2753367 -199574980 + L1ME4a LINE L1 6091 6105 -16 2426 54 3 0 chr4 2753650 2753947 -199574400 - AluY SINE Alu -11 300 3 1785 158 10 3 chr4 2753960 2754258 -199574089 - AluJb SINE Alu -12 300 1 24 32 0 0 chr4 2755533 2755564 -199572783 + GC_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr4 2755569 2755598 -199572749 + GC_rich Low_complexity Low_complexity 1 29 0 225 199 21 28 chr4 2755639 2755780 -199572567 + (CCCCG)n Simple_repeat Simple_repeat 5 144 0 2287 72 3 10 chr4 2756148 2756454 -199571893 - AluSq SINE Alu -1 312 9 210 301 49 77 chr4 2756910 2757053 -199571294 + MIR SINE MIR 100 238 -24 234 253 46 58 chr4 2757124 2757211 -199571136 + MIR SINE MIR 56 141 -67 658 237 74 86 chr4 2757225 2757268 -199571079 - MER46C DNA MER2_type -4 334 292 270 81 0 0 chr4 2757268 2757305 -199571042 + (TATTG)n Simple_repeat Simple_repeat 1 37 0 2106 93 3 7 chr4 2757306 2757596 -199570751 - AluSx SINE Alu -23 289 1 658 237 74 86 chr4 2757596 2757650 -199570697 - MER46C DNA MER2_type -46 292 239 2592 222 38 11 chr4 2757650 2758176 -199570171 + MLT1F LTR MaLR 1 540 -2 658 237 74 86 chr4 2758176 2758352 -199569995 - MER46C DNA MER2_type -99 239 60 1769 167 13 7 chr4 2758352 2758657 -199569690 + AluJo SINE Alu 1 307 -5 658 237 74 86 chr4 2758657 2758716 -199569631 - MER46C DNA MER2_type -278 60 2 2311 89 0 0 chr4 2758946 2759249 -199569098 + AluSx SINE Alu 1 303 -9 213 39 0 0 chr4 2759414 2759440 -199568907 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 2111 127 13 0 chr4 2759452 2759751 -199568596 - AluSx SINE Alu -9 303 1 1246 221 202 12 chr4 2759788 2760262 -199568085 + MER77 LTR ERV1 1 547 -15 264 334 85 5 chr4 2760562 2760762 -199567585 + L2 LINE L2 2804 3015 -257 248 330 62 0 chr4 2760767 2760879 -199567468 + L2 LINE L2 2858 2976 -296 344 339 23 18 chr4 2761347 2761518 -199566829 - L2 LINE L2 -294 3019 2848 2850 116 112 71 chr4 2761588 2762642 -199565705 - pTR5 LTR ERV1 -1 2437 970 1014 87 25 6 chr4 2762619 2762780 -199565567 + pTR5 LTR ERV1 229 392 -2046 * 211 221 29 0 chr4 2763567 2763635 -199564712 + (CCCCG)n Simple_repeat Simple_repeat 4 73 0 1561 87 5 5 chr4 2763724 2763931 -199564416 - AluSg/x SINE Alu -24 288 82 2331 64 7 7 chr4 2764590 2764887 -199563460 - AluY SINE Alu -14 297 1 1828 117 10 52 chr4 2764891 2765198 -199563149 - AluJb SINE Alu -18 294 1 618 256 133 5 chr4 2765421 2765687 -199562660 - L2 LINE L2 -284 3029 2726 267 348 27 27 chr4 2765687 2765799 -199562548 - L2 LINE L2 -701 2613 2502 1829 204 34 50 chr4 2765812 2766317 -199562030 + MLT1D LTR MaLR 9 505 0 248 286 32 56 chr4 2766320 2766446 -199561901 - L2 LINE L2 -823 2491 2369 231 239 28 28 chr4 2766482 2766553 -199561794 + L2 LINE L2 3202 3272 0 2972 233 170 101 chr4 2768062 2768863 -199559484 + HAL1 LINE L1 258 1002 -1505 854 146 0 0 chr4 2768863 2768993 -199559354 + FLAM_A SINE Alu 8 137 -5 2972 233 170 101 chr4 2768993 2769150 -199559197 + HAL1 LINE L1 1002 1147 -1360 2173 101 34 0 chr4 2769150 2769446 -199558901 + AluSx SINE Alu 1 306 -6 2972 233 170 101 chr4 2769446 2769598 -199558749 + HAL1 LINE L1 1147 1287 -1220 2102 118 0 3 chr4 2769598 2769894 -199558453 + AluSq SINE Alu 1 295 -18 2972 233 170 101 chr4 2769894 2770723 -199557624 + HAL1 LINE L1 1287 2479 -28 1860 168 23 13 chr4 2770723 2771032 -199557315 + AluJo SINE Alu 1 312 0 2972 233 170 101 chr4 2771032 2771064 -199557283 + HAL1 LINE L1 2479 2507 0 2238 96 0 0 chr4 2771436 2771729 -199556618 - AluSx SINE Alu -19 293 1 1564 197 62 75 chr4 2771879 2771955 -199556392 - MSTD LTR MaLR 0 396 321 2277 90 3 0 chr4 2771955 2772265 -199556082 - AluY SINE Alu 0 311 1 1564 197 62 75 chr4 2772265 2772589 -199555758 - MSTD LTR MaLR -75 321 1 1733 173 3 10 chr4 2772595 2772901 -199555446 - AluJo SINE Alu -8 304 1 231 36 0 0 chr4 2772904 2772932 -199555415 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 832 113 0 0 chr4 2772932 2773047 -199555300 - AluJb SINE Alu -26 286 172 543 247 98 60 chr4 2773157 2773286 -199555061 + MER57-int LTR ERV1 56 199 -7338 2363 63 0 3 chr4 2773286 2773586 -199554761 + AluY SINE Alu 1 299 -12 543 247 98 60 chr4 2773586 2773691 -199554656 + MER57-int LTR ERV1 199 299 -7238 2357 81 0 0 chr4 2773701 2773998 -199554349 - AluSg1 SINE Alu -12 297 1 958 288 47 35 chr4 2774043 2774244 -199554103 + MER57-int LTR ERV1 2411 2608 -4929 2435 50 0 13 chr4 2774244 2774546 -199553801 - AluSc SINE Alu -11 298 1 958 288 47 35 chr4 2774546 2774947 -199553400 + MER57-int LTR ERV1 2608 6190 -1347 2291 100 0 0 chr4 2775143 2775444 -199552903 + AluSx SINE Alu 1 301 -11 1641 154 50 0 chr4 2775486 2775766 -199552581 - AluJo SINE Alu -11 301 8 2210 120 3 0 chr4 2775806 2776106 -199552241 - AluSx SINE Alu -11 301 1 2362 93 0 0 chr4 2776311 2776622 -199551725 - AluY SINE Alu 0 311 1 4442 77 42 32 chr4 2776622 2776943 -199551404 - MER4-int LTR ERV1 -1786 4812 4496 2122 138 0 6 chr4 2776943 2777255 -199551092 - AluSx SINE Alu 0 312 3 4442 77 42 32 chr4 2777255 2777688 -199550659 - MER4-int LTR ERV1 -2102 4496 4050 2015 192 39 94 chr4 2777691 2778232 -199550115 - LTR9 LTR ERV1 -11 601 99 2211 128 0 0 chr4 2778232 2778544 -199549803 - AluSq SINE Alu -1 312 1 2015 192 39 94 chr4 2778544 2778638 -199549709 - LTR9 LTR ERV1 -513 99 1 528 128 0 11 chr4 2778638 2778732 -199549615 - MER4A-int LTR ERV1 -2545 4053 3961 1599 69 15 0 chr4 2778743 2778946 -199549401 - AluSq SINE Alu -107 206 1 4579 131 86 78 chr4 2778972 2779038 -199549309 - MER4A-int LTR ERV1 -4231 1242 1178 2129 130 0 3 chr4 2779038 2779338 -199549009 + AluSx SINE Alu 1 299 -13 4579 131 86 78 chr4 2779338 2779418 -199548929 - MER4A-int LTR ERV1 -4295 1178 1100 2365 97 0 0 chr4 2779418 2779727 -199548620 + AluY SINE Alu 1 309 -2 4579 131 86 78 chr4 2779727 2780147 -199548200 - MER4A-int LTR ERV1 -4373 1100 684 1902 81 0 0 chr4 2780147 2780383 -199547964 + AluSx SINE Alu 1 236 -76 4579 131 86 78 chr4 2780383 2780473 -199547874 - MER4A-int LTR ERV1 -4789 684 596 351 0 0 0 chr4 2780473 2780512 -199547835 + (TG)n Simple_repeat Simple_repeat 1 39 0 4579 131 86 78 chr4 2780512 2781167 -199547180 - MER4A-int LTR ERV1 -4877 596 1 1552 131 3 83 chr4 2781170 2781551 -199546796 - MER4A LTR ERV1 0 664 256 507 141 10 20 chr4 2781546 2781645 -199546702 - MER4A LTR ERV1 -566 98 1 * 9929 97 46 16 chr4 2781645 2783797 -199544550 - L1PBa LINE L1 -3458 3404 995 1201 131 0 5 chr4 2783793 2783992 -199544355 - L1PBa LINE L1 -6665 198 1 * 2169 101 10 0 chr4 2784003 2784309 -199544038 - AluSx SINE Alu -3 309 1 888 301 17 23 chr4 2784395 2784747 -199543600 + MER57-int LTR ERV1 6794 7143 -394 270 284 0 0 chr4 2784759 2784833 -199543514 + MER57A LTR ERV1 42 115 -288 961 184 107 8 chr4 2784941 2785185 -199543162 + MER57A LTR ERV1 132 399 -4 1648 98 9 0 chr4 2785194 2785418 -199542929 - AluSg SINE Alu -1 311 86 1575 127 89 55 chr4 2788302 2788593 -199539754 + AluJb SINE Alu 5 305 -7 571 302 208 12 chr4 2788680 2789198 -199539149 - L2 LINE L2 -280 3033 2414 286 191 0 43 chr4 2792198 2792292 -199536055 + (CGGGG)n Simple_repeat Simple_repeat 2 91 0 233 154 0 22 chr4 2793211 2793273 -199535074 + MIR SINE MIR 90 148 -114 344 358 37 10 chr4 2794153 2794326 -199534021 + MIR SINE MIR 7 181 -61 483 87 87 0 chr4 2794647 2794716 -199533631 - AluSg SINE Alu -233 76 2 246 216 68 27 chr4 2795344 2795418 -199532929 + MIR SINE MIR 89 165 -97 1966 132 7 0 chr4 2801058 2801347 -199527000 + AluSx SINE Alu 1 291 -21 2032 113 18 0 chr4 2801349 2801633 -199526714 + AluSx SINE Alu 1 289 -23 420 20 0 0 chr4 2801637 2801686 -199526661 + (TG)n Simple_repeat Simple_repeat 2 50 0 403 311 0 0 chr4 2801688 2801778 -199526569 + L1MC4 LINE L1 6614 6703 -1339 367 356 0 0 chr4 2801770 2801860 -199526487 - L1MC4 LINE L1 -1339 6703 6614 * 378 260 0 13 chr4 2801841 2801942 -199526405 + L1MC4 LINE L1 1996 6983 -1339 314 356 0 11 chr4 2801862 2801952 -199526395 - L1MC4 LINE L1 -1339 6703 6615 * 273 169 70 28 chr4 2802748 2802819 -199525528 - MIR SINE MIR -87 121 48 194 231 0 0 chr4 2805289 2805328 -199523019 - MIR SINE MIR -61 147 109 214 329 13 0 chr4 2805802 2805878 -199522469 + (CACCC)n Simple_repeat Simple_repeat 4 80 0 1278 269 75 18 chr4 2807277 2807719 -199520628 - MLT1C LTR MaLR 0 467 1 216 179 0 0 chr4 2812245 2812284 -199516063 + MIR SINE MIR 67 105 -157 180 339 76 8 chr4 2812400 2812518 -199515829 + MIR SINE MIR 103 228 -34 357 356 0 6 chr4 2812612 2812789 -199515558 + (TG)n Simple_repeat Simple_repeat 1 176 0 228 67 0 0 chr4 2813442 2813472 -199514875 + (CA)n Simple_repeat Simple_repeat 1 30 0 183 274 24 113 chr4 2814776 2814900 -199513447 - L2 LINE L2 -145 3127 3015 3103 188 61 7 chr4 2814901 2815003 -199513344 - L1M4 LINE L1 -1774 4372 4277 2068 82 53 4 chr4 2815003 2815284 -199513063 - AluSq SINE Alu -18 295 1 3103 188 61 7 chr4 2815284 2815940 -199512407 - L1M4 LINE L1 -1869 4277 3573 22 35 0 0 chr4 2817066 2817095 -199511252 + GC_rich Low_complexity Low_complexity 1 29 0 44 75 0 0 chr4 2817169 2817262 -199511085 + GC_rich Low_complexity Low_complexity 1 93 0 1403 166 50 13 chr4 2817862 2818163 -199510184 - AluJo SINE Alu 0 312 1 1247 153 0 23 chr4 2818164 2818380 -199509967 - AluJo SINE Alu -15 297 87 1718 140 66 14 chr4 2820499 2820785 -199507562 - AluJb SINE Alu -11 301 1 1258 139 42 14 chr4 2820787 2820798 -199507549 - AluJb SINE Alu -4 308 299 2161 114 10 0 chr4 2820798 2821105 -199507242 - AluSx SINE Alu -2 310 1 1258 139 42 14 chr4 2821105 2821309 -199507038 - AluJb SINE Alu -13 299 87 1037 127 13 6 chr4 2821316 2821474 -199506873 - AluSg/x SINE Alu -17 293 135 260 274 9 19 chr4 2824295 2824401 -199503946 + (CA)n Simple_repeat Simple_repeat 2 106 0 271 178 30 30 chr4 2824414 2824549 -199503798 + (CA)n Simple_repeat Simple_repeat 2 136 0 205 199 28 28 chr4 2825184 2825325 -199503022 + (TG)n Simple_repeat Simple_repeat 2 142 0 338 173 29 29 chr4 2825396 2825569 -199502778 + (TG)n Simple_repeat Simple_repeat 2 174 0 409 306 0 16 chr4 2825582 2825765 -199502582 + (TG)n Simple_repeat Simple_repeat 1 180 0 231 282 0 0 chr4 2825837 2825986 -199502361 + (TG)n Simple_repeat Simple_repeat 2 150 0 273 302 0 0 chr4 2825997 2826083 -199502264 + (TG)n Simple_repeat Simple_repeat 1 86 0 183 80 0 0 chr4 2826963 2826988 -199501359 + (CATCC)n Simple_repeat Simple_repeat 3 27 0 195 42 0 0 chr4 2827109 2827133 -199501214 + (TCCC)n Simple_repeat Simple_repeat 4 27 0 2125 119 0 3 chr4 2829275 2829577 -199498770 - AluSx SINE Alu -11 301 1 212 290 0 0 chr4 2832084 2832146 -199496201 + C-rich Low_complexity Low_complexity 3 64 0 811 165 0 8 chr4 2832220 2832353 -199495994 - FLAM_C SINE Alu -1 132 1 247 264 0 0 chr4 2832526 2832579 -199495768 - MIR SINE MIR -62 146 94 250 320 82 0 chr4 2833341 2833438 -199494909 - MIR SINE MIR -156 106 2 2228 100 0 3 chr4 2834531 2834840 -199493507 - AluSx SINE Alu -4 308 1 203 271 0 0 chr4 2835365 2835413 -199492934 - MIR SINE MIR -107 155 108 * 325 176 54 0 chr4 2835409 2835483 -199492864 + MIR SINE MIR 44 121 -87 255 239 0 5 chr4 2835720 2835785 -199492562 - MIR3 SINE MIR -52 156 92 1806 114 64 0 chr4 2835961 2836242 -199492105 - AluSx SINE Alu -13 299 1 1650 252 81 62 chr4 2837023 2837458 -199490889 - L1ME3A LINE L1 0 6239 5814 1282 97 126 14 chr4 2837458 2837665 -199490682 - MER30 DNA MER1_type 0 230 1 1650 252 81 62 chr4 2837665 2838075 -199490272 - L1ME3A LINE L1 -425 5814 5413 1771 151 20 7 chr4 2838075 2838373 -199489974 - AluJb SINE Alu 0 312 11 1650 252 81 62 chr4 2838373 2838479 -199489868 - L1ME3A LINE L1 -826 5413 5310 1521 187 17 27 chr4 2838479 2838773 -199489574 - AluJo SINE Alu -15 297 7 1650 252 81 62 chr4 2838773 2838859 -199489488 - L1ME3A LINE L1 -929 5310 5227 2155 132 3 0 chr4 2838859 2839170 -199489177 + AluJb SINE Alu 1 312 0 1650 252 81 62 chr4 2839170 2839949 -199488398 - L1ME3A LINE L1 -1012 5227 4385 435 295 199 67 chr4 2839949 2840295 -199488052 - L1ME3A LINE L1 -4112 2284 1893 1862 145 13 7 chr4 2840307 2840611 -199487736 - AluSx SINE Alu -4 308 3 2718 156 125 6 chr4 2840666 2841041 -199487306 - L1MB3 LINE L1 -1 6182 5853 1951 113 13 27 chr4 2841041 2841341 -199487006 + AluJo SINE Alu 14 309 -3 2718 156 125 6 chr4 2841341 2841595 -199486752 - L1MB3 LINE L1 -330 5853 5478 705 196 21 7 chr4 2841625 2841768 -199486579 - BC200 scRNA scRNA -54 146 2 412 234 32 0 chr4 2841768 2841862 -199486485 - L1MB3 LINE L1 -686 5488 5392 297 255 21 7 chr4 2842953 2843098 -199485249 + (CGG)n Simple_repeat Simple_repeat 3 149 0 180 218 36 0 chr4 2843874 2843929 -199484418 - L2 LINE L2 -266 3006 2950 2425 52 0 0 chr4 2843997 2844286 -199484061 - AluSc SINE Alu -20 289 1 588 244 189 13 chr4 2844924 2845306 -199483041 - L1MC5 LINE L1 -209 7752 7304 670 241 47 4 chr4 2845353 2845589 -199482758 - L1MC5 LINE L1 -731 7230 6985 600 210 148 31 chr4 2845589 2845751 -199482596 + AluJb SINE Alu 121 301 -11 2421 70 0 6 chr4 2845751 2846063 -199482284 + AluY SINE Alu 1 310 -1 1873 108 75 0 chr4 2846063 2846340 -199482007 + AluSq SINE Alu 1 299 -14 1582 150 6 27 chr4 2846479 2846835 -199481512 - MER4A LTR ERV1 -1 663 257 2222 105 7 0 chr4 2846849 2847144 -199481203 + AluSx SINE Alu 1 297 -15 1395 221 3 33 chr4 2847391 2847694 -199480653 - AluJo SINE Alu -18 294 1 404 301 43 0 chr4 2847694 2847857 -199480490 - L1MC5 LINE L1 -2072 5736 5567 417 313 89 0 chr4 2847868 2848047 -199480300 - L1ME LINE L1 -422 5699 5505 245 196 216 21 chr4 2848068 2848165 -199480182 + MIR SINE MIR 147 262 0 1983 170 29 52 chr4 2848893 2849180 -199479167 + L1MB7 LINE L1 5657 5930 -254 2113 104 6 41 chr4 2849180 2849350 -199478997 - AluSx SINE Alu -7 305 150 2487 45 0 0 chr4 2849350 2849642 -199478705 - AluY SINE Alu -19 292 1 2113 104 6 41 chr4 2849642 2849787 -199478560 - AluSx SINE Alu -162 150 1 1983 170 29 52 chr4 2849787 2849981 -199478366 + L1MB7 LINE L1 5930 6127 -57 822 210 13 6 chr4 2849981 2850138 -199478209 - FRAM SINE Alu -26 150 1 272 247 34 22 chr4 2850146 2850235 -199478112 + MIR SINE MIR 68 157 -105 2330 70 20 0 chr4 2850755 2851053 -199477294 - AluSp SINE Alu -9 304 1 957 80 11 34 chr4 2851056 2851231 -199477116 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 1403 123 0 5 chr4 2851233 2851444 -199476903 - AluSg/x SINE Alu -1 309 100 1129 165 17 48 chr4 2851612 2851842 -199476505 - AluJo SINE Alu -8 304 82 2080 107 10 3 chr4 2852025 2852315 -199476032 - AluSx SINE Alu -11 301 10 538 283 81 40 chr4 2852321 2852509 -199475838 - L1MEc LINE L1 -3113 3102 2923 2159 128 0 0 chr4 2852509 2852821 -199475526 - AluSq SINE Alu -1 312 1 538 283 81 40 chr4 2852821 2852957 -199475390 - L1MEc LINE L1 -3292 2923 2794 2110 120 0 7 chr4 2852957 2853240 -199475107 + AluSx SINE Alu 1 281 -31 180 97 0 0 chr4 2853241 2853272 -199475075 + (CAAG)n Simple_repeat Simple_repeat 2 32 0 538 283 81 40 chr4 2853272 2853692 -199474655 - L1MEc LINE L1 -3421 2794 2315 1656 206 88 30 chr4 2853692 2854167 -199474180 - MLT1D LTR MaLR 0 505 3 538 283 81 40 chr4 2854167 2854186 -199474161 - L1MEc LINE L1 -3900 2315 2298 322 190 0 0 chr4 2854553 2854611 -199473736 - FAM SINE Alu -2 177 120 1817 161 10 3 chr4 2854615 2854906 -199473441 - AluJb SINE Alu -9 303 11 305 100 0 0 chr4 2854909 2854949 -199473398 + AluSp SINE Alu 140 179 -124 23 0 0 0 chr4 2854967 2854990 -199473357 + AT_rich Low_complexity Low_complexity 1 23 0 752 130 9 17 chr4 2854990 2855105 -199473242 - AluJb SINE Alu -194 118 5 565 249 88 42 chr4 2855119 2855449 -199472898 - L1MEc LINE L1 -4765 1631 1287 2239 128 3 0 chr4 2855502 2855808 -199472539 - AluSx SINE Alu -5 307 1 2355 102 0 3 chr4 2855826 2856129 -199472218 - AluSg SINE Alu -8 302 1 1621 172 11 0 chr4 2856274 2856535 -199471812 + AluJo SINE Alu 29 292 -20 606 270 137 5 chr4 2857191 2857395 -199470952 - MIR SINE MIR 0 262 32 640 218 15 0 chr4 2857625 2857758 -199470589 + FLAM_C SINE Alu 2 136 -7 309 252 96 35 chr4 2857780 2857895 -199470452 - MIR SINE MIR -29 233 112 272 143 41 0 chr4 2858484 2858533 -199469814 + Alu SINE Alu 244 294 -8 292 303 115 0 chr4 2859488 2859610 -199468737 - L2 LINE L2 0 3313 3178 643 229 204 10 chr4 2859629 2859830 -199468517 - MIR SINE MIR -2 260 21 529 293 33 53 chr4 2859835 2860135 -199468212 - L2 LINE L2 -172 3141 2848 423 141 99 0 chr4 2860215 2860286 -199468061 - AluJ/FLAM SINE Alu -230 82 5 883 255 53 67 chr4 2860382 2860533 -199467814 - L2 LINE L2 -947 2367 2215 592 250 65 6 chr4 2860533 2860701 -199467646 - MER5B DNA MER1_type 0 178 1 883 255 53 67 chr4 2860701 2860756 -199467591 - L2 LINE L2 -1099 2215 2161 1356 76 167 5 chr4 2860756 2860954 -199467393 - MER30 DNA MER1_type 0 230 1 883 255 53 67 chr4 2860954 2861178 -199467169 - L2 LINE L2 -1153 2161 1942 359 285 99 90 chr4 2861394 2861826 -199466521 + L2 LINE L2 2875 3310 -3 1573 163 21 52 chr4 2861979 2862268 -199466079 - AluJo SINE Alu -23 289 10 227 29 57 0 chr4 2862632 2862667 -199465680 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 749 155 0 0 chr4 2862670 2862786 -199465561 - FLAM_A SINE Alu -17 116 1 180 238 0 0 chr4 2862786 2862828 -199465519 - MIR SINE MIR -111 151 110 2021 98 11 18 chr4 2863049 2863359 -199464988 + AluSx SINE Alu 1 308 0 300 198 20 0 chr4 2863736 2863813 -199464534 - FLAM_A SINE Alu -3 130 66 21 49 0 49 chr4 2863818 2863879 -199464468 + AT_rich Low_complexity Low_complexity 1 58 0 27 0 0 0 chr4 2864735 2864762 -199463585 + AT_rich Low_complexity Low_complexity 1 27 0 2055 115 7 30 chr4 2865089 2865394 -199462953 - AluSx SINE Alu -14 298 1 305 202 167 0 chr4 2865484 2865568 -199462779 - L2 LINE L2 0 3272 3175 1856 150 3 3 chr4 2865724 2866011 -199462336 + AluJb SINE Alu 18 304 -8 203 356 20 10 chr4 2866373 2866474 -199461873 + MIR SINE MIR 13 114 -148 183 343 14 0 chr4 2866739 2866812 -199461535 + MIR SINE MIR 20 93 -169 230 347 40 16 chr4 2867536 2867660 -199460687 - L2 LINE L2 -25 3247 3121 2347 161 64 7 chr4 2868067 2868507 -199459840 - MLT1C LTR MaLR -2 465 1 2379 81 0 10 chr4 2869881 2870189 -199458158 - AluY SINE Alu -6 305 1 22 35 0 0 chr4 2870359 2870388 -199457959 + AT_rich Low_complexity Low_complexity 1 29 0 286 314 105 12 chr4 2870535 2870707 -199457640 - L1MC5 LINE L1 -54 7907 7720 519 141 21 70 chr4 2870722 2870864 -199457483 - L1MC5 LINE L1 -287 7674 7540 427 226 51 67 chr4 2870872 2871067 -199457280 - L2 LINE L2 -573 2741 2550 1606 183 7 14 chr4 2871483 2871778 -199456569 - AluJb SINE Alu -19 293 1 32 26 0 0 chr4 2871787 2871826 -199456521 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr4 2871888 2871924 -199456423 + AT_rich Low_complexity Low_complexity 1 36 0 1803 168 7 0 chr4 2871924 2872209 -199456138 - AluSx SINE Alu -24 288 2 1716 164 3 24 chr4 2872859 2873152 -199455195 + AluJo SINE Alu 14 300 -12 2392 79 7 0 chr4 2873243 2873546 -199454801 + AluSx SINE Alu 1 305 -7 446 231 10 0 chr4 2873718 2873819 -199454528 + MER5A DNA MER1_type 11 101 -77 1564 184 0 7 chr4 2873867 2874144 -199454203 + AluJb SINE Alu 5 279 -33 2322 96 0 10 chr4 2875338 2875473 -199452874 + AluSx SINE Alu 1 136 -176 2441 64 0 10 chr4 2875473 2875771 -199452576 + AluY SINE Alu 1 295 -16 2322 96 0 10 chr4 2875771 2875938 -199452409 + AluSx SINE Alu 136 300 -12 188 304 101 0 chr4 2876226 2876305 -199452042 - L2 LINE L2 -12 3301 3215 387 213 96 0 chr4 2876329 2876423 -199451924 - L1ME3 LINE L1 -7 6155 6053 729 311 107 48 chr4 2876519 2876622 -199451725 - L2 LINE L2 -255 3058 2962 1794 132 70 0 chr4 2876622 2876895 -199451452 + AluJb SINE Alu 1 292 -20 729 311 107 48 chr4 2876895 2877382 -199450965 - L2 LINE L2 -351 2962 2435 344 176 68 0 chr4 2877460 2877534 -199450813 - L2 LINE L2 -27 3286 3208 844 161 0 0 chr4 2877562 2877686 -199450661 + FRAM SINE Alu 1 124 -52 431 272 159 28 chr4 2877714 2878078 -199450269 - L2 LINE L2 -2242 1072 661 269 340 30 10 chr4 2878262 2878362 -199449985 + L2 LINE L2 3139 3240 -32 1239 99 0 0 chr4 2878549 2878701 -199449646 - AluSg/x SINE Alu -20 292 141 1632 133 0 4 chr4 2878701 2878934 -199449413 - AluSx SINE Alu -80 232 1 2715 48 0 0 chr4 2879382 2879693 -199448654 - AluY SINE Alu 0 311 1 316 177 24 171 chr4 2879870 2879991 -199448356 - L1ME4a LINE L1 -32 6089 5996 2407 94 0 3 chr4 2879991 2880298 -199448049 - AluSx SINE Alu -6 306 1 316 177 24 171 chr4 2880298 2880340 -199448007 - L1ME4a LINE L1 -125 5996 5950 699 251 129 8 chr4 2880466 2880721 -199447626 - L1ME4a LINE L1 -348 5773 5488 2059 134 3 7 chr4 2881774 2882081 -199446266 - AluSx SINE Alu -6 306 1 580 186 143 74 chr4 2882082 2882313 -199446034 - L1MC5 LINE L1 -808 7153 6907 394 267 25 0 chr4 2882312 2882432 -199445915 - L1ME4a LINE L1 -2174 3972 3850 * 661 188 0 8 chr4 2882442 2882570 -199445777 - FRAM SINE Alu -1 175 49 2444 82 0 0 chr4 2882585 2882890 -199445457 - AluY SINE Alu -6 305 1 23 33 0 0 chr4 2882944 2882974 -199445373 + AT_rich Low_complexity Low_complexity 1 30 0 271 218 119 0 chr4 2883021 2883122 -199445225 - L1ME4a LINE L1 -3105 3041 2929 714 172 112 0 chr4 2883275 2883409 -199444938 - FAM SINE Alu -36 149 1 198 200 62 46 chr4 2884256 2884321 -199444026 + L2 LINE L2 1217 1282 -2032 2586 44 0 3 chr4 2884532 2884829 -199443518 - AluY SINE Alu -15 296 1 287 254 149 22 chr4 2885420 2885601 -199442746 + L2 LINE L2 3109 3312 -1 1827 132 0 62 chr4 2886974 2887298 -199441049 - AluSx SINE Alu 0 305 1 324 0 0 0 chr4 2887320 2887356 -199440991 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2028 124 3 7 chr4 2887358 2887640 -199440707 - AluSx SINE Alu -31 281 1 560 293 77 50 chr4 2887910 2888462 -199439885 + L1ME LINE L1 4615 5151 -1011 2013 124 10 10 chr4 2888462 2888752 -199439595 + AluSx SINE Alu 1 290 -22 560 293 77 50 chr4 2888752 2888839 -199439508 + L1ME LINE L1 5151 5234 -928 2154 112 17 0 chr4 2888839 2889135 -199439212 + AluSx SINE Alu 1 301 -11 560 293 77 50 chr4 2889135 2889327 -199439020 + L1ME LINE L1 5234 5468 -694 2224 99 3 7 chr4 2889327 2889630 -199438717 - AluY SINE Alu -9 302 1 866 153 0 29 chr4 2889925 2890062 -199438285 + FLAM_C SINE Alu 1 133 0 2105 116 23 13 chr4 2890089 2890392 -199437955 + AluSx SINE Alu 1 306 -6 327 259 111 44 chr4 2890603 2890738 -199437609 - MIR SINE MIR -115 147 4 272 305 130 11 chr4 2890754 2890931 -199437416 + L3 LINE CR1 1205 1402 -175 231 356 22 37 chr4 2891019 2891154 -199437193 + L3 LINE CR1 1423 1555 -22 274 232 98 0 chr4 2891275 2891357 -199436990 + L2 LINE L2 3190 3279 -34 1932 145 10 19 chr4 2891474 2891785 -199436562 + AluJo SINE Alu 5 312 0 1679 143 3 44 chr4 2891814 2892151 -199436196 - AluSx SINE Alu 0 325 1 2006 146 0 10 chr4 2892250 2892551 -199435796 + AluJb SINE Alu 1 298 -14 376 149 402 0 chr4 2893236 2893323 -199435024 + FLAM_C SINE Alu 5 126 -7 650 123 105 0 chr4 2893346 2893460 -199434887 + AluSg/x SINE Alu 184 309 -1 1755 161 23 7 chr4 2893901 2894205 -199434142 + AluJo SINE Alu 1 309 -3 2505 64 0 0 chr4 2894812 2895109 -199433238 - AluY SINE Alu -14 297 1 2150 130 0 0 chr4 2895138 2895431 -199432916 - AluSx SINE Alu -19 293 1 1864 167 3 3 chr4 2895682 2895981 -199432366 - AluSx SINE Alu -13 299 1 35 54 0 0 chr4 2896300 2896356 -199431991 + AT_rich Low_complexity Low_complexity 1 56 0 1140 176 132 37 chr4 2896470 2896743 -199431604 - AluJo SINE Alu 0 302 4 219 311 82 0 chr4 2899803 2899864 -199428483 - L2 LINE L2 -71 3201 3136 742 138 98 0 chr4 2900590 2900713 -199427634 + AluJo SINE Alu 1 135 -177 795 187 0 15 chr4 2900845 2900979 -199427368 - FLAM_C SINE Alu -1 132 1 2082 109 32 0 chr4 2901381 2901666 -199426681 + AluSx SINE Alu 1 294 -18 2302 111 0 13 chr4 2901669 2901984 -199426363 + AluY SINE Alu 1 311 0 905 248 63 4 chr4 2902247 2902485 -199425862 - MLT1E LTR MaLR -1 592 341 485 223 223 45 chr4 2902494 2902696 -199425651 - MLT1E LTR MaLR -355 238 1 1499 286 70 16 chr4 2903058 2903632 -199424715 - L1ME3A LINE L1 -2 6168 5564 227 288 14 13 chr4 2905198 2905288 -199423059 + CT-rich Low_complexity Low_complexity 1 90 0 21 0 0 0 chr4 2905644 2905665 -199422682 + AT_rich Low_complexity Low_complexity 1 21 0 1776 140 0 33 chr4 2910373 2910680 -199417667 - AluJb SINE Alu -14 298 2 1880 169 7 0 chr4 2911443 2911751 -199416596 - AluJb SINE Alu -2 310 1 2025 137 0 9 chr4 2911757 2912072 -199416275 - AluSx SINE Alu 0 312 1 1343 54 0 0 chr4 2912835 2913001 -199415346 + AluY SINE Alu 134 299 -12 1828 68 59 94 chr4 2914149 2914283 -199414064 + AluSp SINE Alu 1 138 -175 2089 100 0 3 chr4 2914283 2914573 -199413774 + AluY SINE Alu 1 289 -22 1828 68 59 94 chr4 2914573 2914745 -199413602 + AluSp SINE Alu 138 296 -17 2226 82 0 0 chr4 2915087 2915409 -199412938 - AluSc SINE Alu 0 322 1 30557 110 13 60 chr4 2915448 2917749 -199410598 - L1PA7 LINE L1 0 6154 3746 1926 119 36 23 chr4 2917749 2918052 -199410295 - AluSc SINE Alu 0 309 3 30557 110 13 60 chr4 2918052 2920047 -199408300 - L1PA7 LINE L1 -2408 3746 2276 2288 75 0 3 chr4 2920047 2920342 -199408005 - AluY SINE Alu -17 294 1 30557 110 13 60 chr4 2920342 2922508 -199405839 - L1PA7 LINE L1 -3878 2276 9 283 333 69 7 chr4 2922599 2922743 -199405604 - MIR SINE MIR -2 260 108 225 237 0 0 chr4 2933187 2933246 -199395101 + (CCCCAA)n Simple_repeat Simple_repeat 5 63 0 434 283 5 35 chr4 2933339 2933656 -199394691 + C-rich Low_complexity Low_complexity 1 307 0 343 295 145 21 chr4 2934183 2934424 -199393923 - MLT2F LTR ERVL -89 574 304 277 280 40 0 chr4 2934523 2934598 -199393749 - MLT2F LTR ERVL -532 131 54 3314 143 118 33 chr4 2934749 2935386 -199392961 + LTR8 LTR ERV1 1 691 0 1943 75 101 0 chr4 2937160 2937427 -199390920 + AluSp SINE Alu 1 294 -19 1658 152 11 14 chr4 2937427 2937704 -199390643 - AluJo SINE Alu -21 291 16 228 305 73 24 chr4 2939516 2939598 -199388749 - L2 LINE L2 -49 3264 3179 589 268 91 0 chr4 2942541 2942761 -199385586 - Charlie5 DNA MER1_type -12 2600 2361 2239 98 0 0 chr4 2943323 2943618 -199384729 - AluSp SINE Alu -18 295 1 181 149 43 21 chr4 2945736 2945783 -199382564 - MIR SINE MIR -42 220 173 2209 93 0 0 chr4 2947375 2947666 -199380681 - AluSx SINE Alu -21 291 1 1776 169 3 3 chr4 2948114 2948415 -199379932 - AluJb SINE Alu -11 301 1 209 186 0 0 chr4 2949783 2949826 -199378521 + GA-rich Low_complexity Low_complexity 1 43 0 705 187 0 22 chr4 2950603 2950737 -199377610 + AluJo SINE Alu 11 141 -171 2249 94 7 0 chr4 2950737 2951036 -199377311 + AluSx SINE Alu 1 301 -11 23 33 0 0 chr4 2951334 2951364 -199376983 + AT_rich Low_complexity Low_complexity 1 30 0 2105 101 10 7 chr4 2951571 2951867 -199376480 + AluSx SINE Alu 1 297 -15 1106 181 166 30 chr4 2952865 2953130 -199375217 + AluJo SINE Alu 2 302 0 619 149 44 0 chr4 2953025 2953139 -199375208 + AluJo/FRAM SINE Alu 193 311 -1 205 212 202 30 chr4 2955026 2955125 -199373222 + MIR3 SINE MIR 4 119 -89 2179 98 0 0 chr4 2955750 2956045 -199372302 - AluSg SINE Alu -15 295 1 2402 71 0 3 chr4 2958056 2958366 -199369981 + AluY SINE Alu 1 309 -2 2153 104 0 7 chr4 2958717 2959016 -199369331 - AluSx SINE Alu -14 298 2 291 248 191 0 chr4 2959285 2959390 -199368957 + MIR SINE MIR 136 260 -2 235 166 61 6 chr4 2959396 2959559 -199368788 + (TTA)n Simple_repeat Simple_repeat 3 174 0 488 68 21 88 chr4 2959573 2959765 -199368582 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 383 173 16 54 chr4 2959765 2959950 -199368397 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 181 138 0 0 chr4 2960022 2960051 -199368296 - MIR SINE MIR -121 141 113 346 236 181 31 chr4 2960772 2960899 -199367448 - MIR SINE MIR 0 262 117 292 273 13 0 chr4 2961227 2961304 -199367043 + MIR SINE MIR 56 133 -129 22 35 0 0 chr4 2961330 2961359 -199366988 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr4 2961920 2961955 -199366392 + GC_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chr4 2962306 2962346 -199366001 + GC_rich Low_complexity Low_complexity 1 40 0 244 196 0 0 chr4 2962556 2962602 -199365745 + (CGG)n Simple_repeat Simple_repeat 3 48 0 3553 80 120 35 chr4 2963389 2963937 -199364410 + LTR61 LTR ERV1 1 595 0 605 142 31 63 chr4 2964245 2964372 -199363975 + FLAM_A SINE Alu 10 132 -10 2405 50 3 0 chr4 2964807 2965106 -199363241 + AluY SINE Alu 1 300 -11 2129 155 34 8 chr4 2965587 2965941 -199362406 + MLT1A1 LTR MaLR 1 363 -2 2101 110 10 3 chr4 2966075 2966374 -199361973 - AluSx SINE Alu -11 301 1 2138 81 3 24 chr4 2966468 2966766 -199361581 - AluSp SINE Alu -21 292 1 299 191 0 16 chr4 2967096 2967159 -199361188 - LTR67 LTR ERVL -39 518 457 373 364 112 5 chr4 2967215 2967402 -199360945 - L2 LINE L2 0 3313 3107 562 172 0 0 chr4 2967927 2968014 -199360333 - AluS SINE Alu -224 88 2 2379 80 3 3 chr4 2968018 2968352 -199359995 - AluSp SINE Alu 0 334 1 1526 145 16 46 chr4 2968352 2968656 -199359691 - AluJo SINE Alu -17 295 1 2224 88 0 0 chr4 2969053 2969347 -199359000 + AluSc SINE Alu 1 294 -15 2141 84 0 10 chr4 2969349 2969645 -199358702 - AluY SINE Alu -18 293 1 265 232 0 18 chr4 2970107 2970163 -199358184 + L2 LINE L2 3259 3313 0 2133 186 34 36 chr4 2970285 2970753 -199357594 - MLT1C LTR MaLR 0 467 1 1850 158 0 0 chr4 2971419 2971710 -199356637 - AluJb SINE Alu -21 291 1 1225 303 206 7 chr4 2971780 2972625 -199355722 + L2 LINE L2 1894 2906 -408 756 231 84 48 chr4 2972658 2972695 -199355652 + L2 LINE L2 3041 3075 -238 763 167 24 0 chr4 2972695 2972821 -199355526 - FLAM_A SINE Alu -4 129 1 756 231 84 48 chr4 2972821 2973034 -199355313 + L2 LINE L2 3075 3300 -13 192 40 0 0 chr4 2973034 2973059 -199355288 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 218 287 32 43 chr4 2973059 2973153 -199355194 + MIR SINE MIR 13 105 -157 * 370 233 125 33 chr4 2973151 2973271 -199355076 - L2 LINE L2 -1 3271 3141 370 209 97 75 chr4 2973290 2973354 -199354993 - MLT1J2 LTR MaLR -255 195 134 612 150 18 9 chr4 2973354 2973467 -199354880 - L1PB2 LINE L1 -1 6150 6037 370 209 97 75 chr4 2973467 2973536 -199354811 - MLT1J2 LTR MaLR -316 134 59 2260 77 0 0 chr4 2973698 2973984 -199354363 + AluSc SINE Alu 1 286 -23 1399 169 74 19 chr4 2974493 2974852 -199353495 + LTR54 LTR ERV1 1 404 -94 216 158 0 0 chr4 2974852 2974890 -199353457 + CT-rich Low_complexity Low_complexity 1 38 0 1136 171 46 0 chr4 2974899 2975116 -199353231 - AluJo SINE Alu 0 312 86 513 133 20 10 chr4 2975116 2975214 -199353133 + LTR54 LTR ERV1 410 508 -2 2139 116 6 0 chr4 2975303 2975614 -199352733 - AluSp SINE Alu 0 313 1 1055 265 41 32 chr4 2976151 2976563 -199351784 - MLT1J1 LTR MaLR 0 446 68 352 248 9 28 chr4 2976586 2976695 -199351652 - L1 LINE L1 -866 5280 5174 1348 178 15 118 chr4 2977338 2977486 -199350861 + AluJb SINE Alu 1 163 -139 1942 116 0 47 chr4 2977486 2977623 -199350724 + AluSx SINE Alu 1 143 -169 2182 88 17 3 chr4 2977623 2977920 -199350427 + AluY SINE Alu 1 301 -10 1942 116 0 47 chr4 2977920 2978102 -199350245 + AluSx SINE Alu 143 305 -7 2216 64 4 4 chr4 2978106 2978387 -199349960 + AluSp SINE Alu 1 281 -32 1348 178 15 118 chr4 2978387 2978564 -199349783 + AluJb SINE Alu 166 297 -5 221 329 12 0 chr4 2978789 2978874 -199349473 + L2 LINE L2 3185 3270 -2 188 250 132 13 chr4 2979110 2979186 -199349161 - MIR SINE MIR -17 245 161 8605 151 68 19 chr4 2979418 2980971 -199347376 - MER52A LTR ERV1 0 1755 50 227 333 16 0 chr4 2981542 2981605 -199346742 + L2 LINE L2 3209 3272 0 231 281 112 0 chr4 2981606 2981695 -199346652 - L2 LINE L2 -901 2413 2315 768 246 111 63 chr4 2982182 2982402 -199345945 + L2 LINE L2 2960 3203 -110 1958 121 48 58 chr4 2982402 2982781 -199345566 - THE1C LTR MaLR 0 375 1 768 246 111 63 chr4 2982781 2982894 -199345453 + L2 LINE L2 3203 3309 -4 856 151 0 0 chr4 2983494 2983620 -199344727 - FLAM_C SINE Alu -14 129 4 1994 80 42 7 chr4 2983807 2984095 -199344252 + AluY SINE Alu 1 298 -13 696 200 8 0 chr4 2984102 2984227 -199344120 + FLAM_A SINE Alu 1 126 -7 344 353 87 12 chr4 2984247 2984394 -199343953 + L1MC4a LINE L1 5722 5885 -1923 2101 79 48 3 chr4 2984394 2984685 -199343662 + AluY SINE Alu 1 304 -7 344 353 87 12 chr4 2984685 2984710 -199343637 + L1MC4a LINE L1 5885 5907 -1901 421 336 118 0 chr4 2984727 2984956 -199343391 - L1MC/D LINE L1 -2167 5641 5386 2245 80 3 3 chr4 2985032 2985332 -199343015 - AluSc SINE Alu -9 300 1 2356 148 69 29 chr4 2985615 2986095 -199342252 - L1MB8 LINE L1 -1 6177 5679 263 141 188 0 chr4 2986099 2986163 -199342184 - L1MB3 LINE L1 -7 6176 6101 881 189 12 0 chr4 2986168 2986337 -199342010 - L1M3 LINE L1 -388 5795 5625 983 97 8 0 chr4 2986337 2986471 -199341876 + AluSq/x SINE Alu 1 135 -178 2034 146 0 0 chr4 2986472 2986780 -199341567 + AluSx SINE Alu 1 308 -4 1569 163 62 14 chr4 2986783 2987150 -199341197 - L1M3 LINE L1 -550 5624 5241 582 118 20 29 chr4 2987150 2987274 -199341073 + AluSg/x SINE Alu 183 305 0 2092 76 14 7 chr4 2987581 2987872 -199340475 + AluSc SINE Alu 1 293 -16 898 131 0 115 chr4 2988087 2988278 -199340069 - AluSg/x SINE Alu -8 304 136 23 68 0 0 chr4 2988764 2988808 -199339539 + AT_rich Low_complexity Low_complexity 1 44 0 2281 105 0 0 chr4 2988922 2989235 -199339112 - AluSq SINE Alu 0 313 1 189 287 96 32 chr4 2989608 2989702 -199338645 + L2 LINE L2 3155 3254 -18 1629 193 15 46 chr4 2989715 2990108 -199338239 - MLT2C1 LTR ERVL 0 397 17 1979 130 0 3 chr4 2990190 2990490 -199337857 - AluSx SINE Alu -13 299 1 900 149 0 8 chr4 2990722 2990856 -199337491 - FLAM_A SINE Alu 0 133 1 1684 155 10 17 chr4 2991076 2991373 -199336974 + AluJo SINE Alu 1 295 -17 1583 197 0 10 chr4 2991377 2991666 -199336681 + AluJb SINE Alu 1 286 -26 2054 132 3 0 chr4 2992070 2992381 -199335966 + AluSx SINE Alu 1 312 0 699 215 17 29 chr4 2992381 2992542 -199335805 - MIR SINE MIR -50 212 52 1901 161 0 0 chr4 2992879 2993189 -199335158 - AluSx SINE Alu -2 310 1 483 142 14 177 chr4 2993395 2993457 -199334890 - MSTD LTR MaLR 0 396 368 3497 94 2 0 chr4 2993457 2993933 -199334414 - L1PA13 LINE L1 -3 6160 5684 483 142 14 177 chr4 2993933 2994009 -199334338 - MSTD LTR MaLR -28 368 281 979 249 50 80 chr4 2994009 2994065 -199334282 - LTR56 LTR ERV1 0 437 381 1912 120 17 40 chr4 2994065 2994366 -199333981 + AluSx SINE Alu 1 294 -18 979 249 50 80 chr4 2994366 2994757 -199333590 - LTR56 LTR ERV1 -56 381 9 600 200 140 93 chr4 2994774 2994951 -199333396 - MSTD LTR MaLR -114 282 91 2140 105 0 0 chr4 2994951 2995247 -199333100 + AluSx SINE Alu 1 296 -16 600 200 140 93 chr4 2995247 2995343 -199333004 - MSTD LTR MaLR -305 91 1 523 141 0 0 chr4 2995617 2995695 -199332652 + AluJ/FLAM SINE Alu 2 79 -233 707 225 16 16 chr4 2995889 2996076 -199332271 + L1 LINE L1 3773 3959 -2187 315 232 192 40 chr4 2996080 2996205 -199332142 - MSTC LTR MaLR -284 144 1 5442 186 24 60 chr4 2996240 2996306 -199332041 + L1ME LINE L1 3988 4055 -2135 2116 128 0 0 chr4 2996306 2996610 -199331737 + AluSg SINE Alu 1 304 -6 5442 186 24 60 chr4 2996610 2996756 -199331591 + L1ME LINE L1 4055 4205 -1985 2015 117 7 3 chr4 2996756 2997055 -199331292 + AluSx SINE Alu 3 302 -10 5442 186 24 60 chr4 2997055 2997746 -199330601 + L1ME LINE L1 4205 4825 -1365 1704 190 20 42 chr4 2997746 2998151 -199330196 - MSTD LTR MaLR 0 396 1 5442 186 24 60 chr4 2998151 2998669 -199329678 + L1ME LINE L1 4825 5360 -830 21 36 0 0 chr4 2998963 2998991 -199329356 + AT_rich Low_complexity Low_complexity 1 28 0 181 273 23 0 chr4 2999131 2999175 -199329172 + L2 LINE L2 3223 3267 -46 2228 96 6 16 chr4 2999234 2999546 -199328801 - AluSc SINE Alu 0 309 1 380 264 6 10 chr4 2999785 2999881 -199328466 + L1MC4 LINE L1 1995 6983 -1339 248 221 47 0 chr4 2999891 2999977 -199328370 + L1MC4 LINE L1 6614 6703 -1339 273 57 0 0 chr4 2999999 3000034 -199328313 + (CA)n Simple_repeat Simple_repeat 2 36 0 2178 88 3 3 chr4 3000048 3000345 -199328002 - AluSq SINE Alu -16 297 1 438 277 43 14 chr4 3000697 3000838 -199327509 + L1ME LINE L1 5517 5661 -460 976 195 0 61 chr4 3001000 3001231 -199327116 + AluJb SINE Alu 1 217 -95 * 1030 127 6 0 chr4 3001230 3001388 -199326959 + AluSg/x SINE Alu 131 289 -23 610 167 0 0 chr4 3001389 3001491 -199326856 + AluJb SINE Alu 135 236 -76 2679 147 39 30 chr4 3001590 3001870 -199326477 - L1MB2 LINE L1 -3 6168 5879 2007 121 3 3 chr4 3001870 3002168 -199326179 - AluSx SINE Alu -14 298 1 2679 147 39 30 chr4 3002168 3002396 -199325951 - L1MB2 LINE L1 -292 5879 5655 192 40 0 0 chr4 3002408 3002433 -199325914 + (GTTTG)n Simple_repeat Simple_repeat 5 29 0 1872 76 76 8 chr4 3002433 3002697 -199325650 - AluSq SINE Alu -31 282 1 2651 125 13 47 chr4 3003114 3003562 -199324785 - Tigger2a DNA MER2_type -1 433 1 193 286 98 18 chr4 3003977 3004089 -199324258 - L2 LINE L2 -579 2735 2615 1959 114 13 24 chr4 3004199 3004517 -199323830 + AluSx SINE Alu 1 312 0 201 287 96 11 chr4 3004651 3004745 -199323602 + MIR3 SINE MIR 60 161 -47 2357 91 3 3 chr4 3004776 3005074 -199323273 + AluSp SINE Alu 1 298 -15 1823 153 50 0 chr4 3005176 3005458 -199322889 + AluJb SINE Alu 1 296 -16 1026 196 0 21 chr4 3005714 3005908 -199322439 + AluJo SINE Alu 121 310 -2 647 240 112 11 chr4 3005924 3006103 -199322244 - MIR SINE MIR -63 199 3 1096 170 0 0 chr4 3006544 3006715 -199321632 + FAM SINE Alu 1 44 -5 577 316 14 28 chr4 3006984 3007199 -199321148 + MIR SINE MIR 47 258 -4 2196 98 7 3 chr4 3007200 3007497 -199320850 + AluSx SINE Alu 1 298 -14 2347 90 7 3 chr4 3007821 3008121 -199320226 + AluSg SINE Alu 1 301 -9 2339 82 0 0 chr4 3008887 3009205 -199319142 - AluSp SINE Alu 0 318 1 206 304 48 56 chr4 3009637 3009762 -199318585 - L3 LINE CR1 -28 1549 1426 862 128 0 0 chr4 3009978 3010095 -199318252 + FLAM_C SINE Alu 2 118 -15 28 29 0 0 chr4 3010095 3010130 -199318217 + AT_rich Low_complexity Low_complexity 1 35 0 257 274 174 26 chr4 3010589 3010779 -199317568 + MIR SINE MIR 12 229 -33 251 172 198 43 chr4 3011100 3011216 -199317131 + L1ME4a LINE L1 5982 6115 -6 320 272 44 33 chr4 3011222 3011402 -199316945 + L1MC5 LINE L1 7732 7913 -48 2262 95 0 14 chr4 3011537 3011831 -199316516 + AluSx SINE Alu 1 290 -22 847 147 0 0 chr4 3011836 3011952 -199316395 - FLAM_C SINE Alu -16 117 2 2089 82 36 52 chr4 3012430 3012735 -199315612 + AluSg SINE Alu 1 300 -10 1131 166 6 0 chr4 3012735 3012910 -199315437 + AluJb SINE Alu 134 309 -3 351 322 136 12 chr4 3013166 3013408 -199314939 + L2 LINE L2 2561 2832 -482 23 0 0 0 chr4 3013664 3013687 -199314660 + AT_rich Low_complexity Low_complexity 1 23 0 1492 242 98 68 chr4 3013841 3014258 -199314089 + L1MC4a LINE L1 3782 4185 -1961 853 132 0 29 chr4 3014258 3014394 -199313953 - FLAM_C SINE Alu -1 132 1 1492 242 98 68 chr4 3014394 3014572 -199313775 + L1MC4a LINE L1 4185 4356 -1790 815 160 0 0 chr4 3014572 3014697 -199313650 + FLAM_A SINE Alu 2 126 -7 1492 242 98 68 chr4 3014697 3014779 -199313568 + L1MC4a LINE L1 4356 4434 -1712 2341 100 0 3 chr4 3014779 3015080 -199313267 + AluSx SINE Alu 1 300 -12 1492 242 98 68 chr4 3015080 3015203 -199313144 + L1MC4a LINE L1 4434 4608 -1538 204 40 0 0 chr4 3015208 3015233 -199313114 + (TG)n Simple_repeat Simple_repeat 1 25 0 731 261 51 4 chr4 3015237 3015471 -199312876 + L1MC4a LINE L1 5301 5545 -617 2010 108 52 7 chr4 3016202 3016489 -199311858 - AluSx SINE Alu -12 300 1 352 239 14 0 chr4 3016886 3016957 -199311390 - MER2 DNA MER2_type -1 344 273 1314 147 20 12 chr4 3016992 3017244 -199311103 - MER2 DNA MER2_type -57 288 35 234 294 165 9 chr4 3018040 3018149 -199310198 + L2 LINE L2 3145 3270 -2 368 188 0 0 chr4 3018160 3018224 -199310123 - FLAM_A SINE Alu -68 64 1 1766 170 3 10 chr4 3018879 3019168 -199309179 - AluJo SINE Alu -21 291 5 334 243 37 19 chr4 3019963 3020070 -199308277 + L1MC4a LINE L1 5830 5938 -1870 391 391 41 10 chr4 3020175 3020372 -199307975 - L1MEc LINE L1 -5995 401 199 976 214 25 79 chr4 3020428 3020746 -199307601 - AluJo SINE Alu 0 302 2 2255 106 10 0 chr4 3020764 3021079 -199307268 + AluSx SINE Alu 1 318 0 533 285 189 48 chr4 3021083 3021174 -199307173 - L1MC4a LINE L1 -1436 6372 6295 2364 120 0 0 chr4 3021174 3021475 -199306872 + AluSx SINE Alu 1 301 -11 533 285 189 48 chr4 3021475 3021573 -199306774 - L1MC4a LINE L1 -1513 6295 6212 2604 36 3 10 chr4 3021573 3021876 -199306471 - AluY SINE Alu -10 301 1 533 285 189 48 chr4 3021876 3022166 -199306181 - L1MC4a LINE L1 -1596 6212 5824 1078 223 92 4 chr4 3022259 3022532 -199305815 - L1MC4a LINE L1 -2101 5707 5411 1003 105 0 0 chr4 3022633 3022766 -199305581 + FLAM_C SINE Alu 1 133 0 297 232 43 0 chr4 3022828 3022897 -199305450 - MIR SINE MIR -183 79 8 402 283 9 44 chr4 3023073 3023186 -199305161 - L2 LINE L2 0 3272 3164 1699 172 37 24 chr4 3023235 3023532 -199304815 - AluJb SINE Alu -11 301 1 376 281 70 12 chr4 3024331 3024502 -199303845 - MIR3 SINE MIR -19 189 9 698 177 0 0 chr4 3024831 3024961 -199303386 - L1MB7 LINE L1 -1 6183 6054 2226 125 0 0 chr4 3024961 3025258 -199303089 - AluSx SINE Alu -15 297 1 253 191 0 0 chr4 3025258 3025300 -199303047 - L1MB7 LINE L1 -293 5875 5834 528 173 29 29 chr4 3026618 3026722 -199301625 - L2 LINE L2 0 3313 3210 348 257 119 95 chr4 3026880 3027250 -199301097 - L2 LINE L2 -414 2900 2522 722 284 222 16 chr4 3027280 3028037 -199300310 - L2 LINE L2 -1683 1631 719 1314 106 22 0 chr4 3028388 3028568 -199299779 + AluSq SINE Alu 1 184 -129 471 76 0 0 chr4 3028569 3028635 -199299712 + AluSc SINE Alu 238 303 -6 471 236 19 0 chr4 3028857 3028963 -199299384 + MIR SINE MIR 107 214 -48 1491 185 18 78 chr4 3029127 3029289 -199299058 - MLT1A1 LTR MaLR 0 365 195 775 174 0 36 chr4 3029289 3029427 -199298920 + FLAM_C SINE Alu 1 133 0 1491 185 18 78 chr4 3029427 3029648 -199298699 - MLT1A1 LTR MaLR -170 195 5 2146 114 3 25 chr4 3029757 3030073 -199298274 - AluSc SINE Alu 0 309 1 266 241 167 19 chr4 3030116 3030224 -199298123 - L2 LINE L2 -7 3265 3142 377 202 131 20 chr4 3030512 3030611 -199297736 - MER58B DNA MER1_type 0 341 232 2336 65 41 0 chr4 3031164 3031454 -199296893 + AluY SINE Alu 1 302 -9 779 122 7 58 chr4 3031771 3031910 -199296437 - FLAM_C SINE Alu 0 133 2 971 190 28 6 chr4 3032130 3032309 -199296038 - AluJo SINE Alu -129 183 1 525 32 0 0 chr4 3033233 3033296 -199295051 + (TG)n Simple_repeat Simple_repeat 1 63 0 276 53 0 0 chr4 3033763 3033801 -199294546 + (TG)n Simple_repeat Simple_repeat 2 39 0 2374 90 0 10 chr4 3033827 3034128 -199294219 + AluSg SINE Alu 1 298 -12 2377 100 0 0 chr4 3035128 3035429 -199292918 + AluSx SINE Alu 1 301 -11 2446 109 0 0 chr4 3035610 3035923 -199292424 + AluSq SINE Alu 1 313 0 2110 123 0 0 chr4 3036355 3036666 -199291681 + AluSx SINE Alu 1 311 0 285 343 66 15 chr4 3038647 3038784 -199289563 + MIR SINE MIR 108 251 -11 4312 117 11 17 chr4 3039066 3039252 -199289095 + MER41B LTR ERV1 1 187 -448 1819 127 92 0 chr4 3039252 3039536 -199288811 + AluSx SINE Alu 1 310 -2 4312 117 11 17 chr4 3039536 3039988 -199288359 + MER41B LTR ERV1 187 635 0 735 108 0 0 chr4 3040328 3040430 -199287917 + U6 snRNA snRNA 1 102 -5 1808 119 79 0 chr4 3040577 3040854 -199287493 - AluSx SINE Alu -13 299 1 3951 159 99 38 chr4 3040888 3041699 -199286648 + MER21B LTR ERV1 3 862 -1 1867 224 54 17 chr4 3041709 3042227 -199286120 - MER72 LTR ERV1 -174 548 12 2900 118 18 18 chr4 3042341 3042775 -199285572 - MER57B LTR ERV1 0 434 1 1207 72 63 31 chr4 3042775 3042987 -199285360 - MER57B-int LTR ERV1 0 7537 7279 748 86 23 31 chr4 3042987 3043115 -199285232 - LTR54B LTR ERV1 -367 131 5 14282 96 72 48 chr4 3043115 3043156 -199285191 - MER57B-int LTR ERV1 -387 7150 7111 6322 113 17 42 chr4 3043156 3043257 -199285090 + LTR13 LTR ERVK 1 103 -851 2515 46 0 0 chr4 3043257 3043576 -199284771 + AluY SINE Alu 1 319 0 6322 113 17 42 chr4 3043576 3044451 -199283896 + LTR13 LTR ERVK 103 954 0 14282 96 72 48 chr4 3044451 3045369 -199282978 - MER57B-int LTR ERV1 -426 7111 6216 2257 120 0 0 chr4 3045369 3045669 -199282678 + AluSx SINE Alu 1 300 -12 14282 96 72 48 chr4 3045669 3046134 -199282213 - MER57B-int LTR ERV1 -1321 6216 5763 381 43 0 0 chr4 3046134 3046181 -199282166 + (CA)n Simple_repeat Simple_repeat 1 47 0 646 103 0 0 chr4 3046181 3046268 -199282079 - AluSg/x SINE Alu -18 294 208 14282 96 72 48 chr4 3046268 3047201 -199281146 - MER57B-int LTR ERV1 -1773 5764 4646 407 91 0 30 chr4 3047201 3047260 -199281087 - MER57B-int LTR ERV1 -3194 4343 4284 441 0 0 0 chr4 3047260 3047309 -199281038 + (TG)n Simple_repeat Simple_repeat 2 50 0 2216 99 7 0 chr4 3047309 3047592 -199280755 - AluSp SINE Alu -28 285 1 5103 121 61 32 chr4 3047607 3048476 -199279871 + MER57-int LTR ERV1 1478 2371 -5166 839 160 27 0 chr4 3048475 3048625 -199279722 + MER57-int LTR ERV1 2476 2629 -4908 * 1672 82 55 8 chr4 3048621 3048878 -199279469 + MER57-int LTR ERV1 2781 3049 -4488 3512 92 31 81 chr4 3048883 3048933 -199279414 + MER57-int LTR ERV1 3248 3299 -4517 2171 107 3 23 chr4 3048933 3049233 -199279114 + AluSx SINE Alu 1 294 -18 3512 92 31 81 chr4 3049233 3049478 -199278869 + MER57-int LTR ERV1 3299 3555 -4261 2231 135 0 0 chr4 3049478 3049789 -199278558 + AluSx SINE Alu 2 312 0 3512 92 31 81 chr4 3049789 3049981 -199278366 + MER57-int LTR ERV1 3555 3755 -4061 2335 96 7 3 chr4 3049981 3050284 -199278063 - AluSq SINE Alu -9 304 1 3512 92 31 81 chr4 3050284 3050603 -199277744 + MER57-int LTR ERV1 3755 4143 -3673 2471 68 21 21 chr4 3050601 3050931 -199277416 + MER57-int LTR ERV1 3914 4246 -3291 * 2348 110 0 0 chr4 3050931 3051239 -199277108 - AluSg SINE Alu -2 308 1 2471 68 21 21 chr4 3051239 3051293 -199277054 + MER57-int LTR ERV1 4245 4298 -3239 1463 107 202 4 chr4 3051293 3051536 -199276811 + AluSg1 SINE Alu 1 291 -18 280 98 0 0 chr4 3051538 3051579 -199276768 - MER57B-int LTR ERV1 -6151 1386 1346 * 1299 86 0 0 chr4 3051573 3051748 -199276599 - MER57B-int LTR ERV1 -6570 967 793 * 4521 98 24 3 chr4 3051746 3052407 -199275940 - MER57B-int LTR ERV1 -6860 677 3 2718 113 61 0 chr4 3052408 3052816 -199275531 - MER57B LTR ERV1 -1 433 1 1420 153 92 98 chr4 3052969 3053256 -199275091 - L1MB3 LINE L1 0 6183 5897 2473 73 0 0 chr4 3053256 3053556 -199274791 - AluY SINE Alu -7 304 5 1420 153 92 98 chr4 3053556 3053668 -199274679 - L1MB3 LINE L1 -286 5897 5786 4293 107 5 45 chr4 3053668 3053851 -199274496 - MER41B LTR ERV1 0 635 446 2314 74 40 0 chr4 3053851 3054150 -199274197 - AluY SINE Alu 0 311 1 4293 107 5 45 chr4 3054150 3054272 -199274075 - MER41B LTR ERV1 -189 446 321 2303 80 3 0 chr4 3054272 3054571 -199273776 + AluSp SINE Alu 1 300 -13 4293 107 5 45 chr4 3054571 3054923 -199273424 - MER41B LTR ERV1 -314 321 1 1809 171 0 0 chr4 3054944 3055248 -199273099 - AluSx SINE Alu -8 304 1 1758 221 53 22 chr4 3055265 3055677 -199272670 + MER57B LTR ERV1 1 425 -9 262 200 36 0 chr4 3055682 3055737 -199272610 - L1MB3 LINE L1 -641 5542 5486 * 280 232 70 35 chr4 3055715 3055818 -199272529 - L1ME LINE L1 -286 5835 5724 1968 92 67 7 chr4 3055818 3056101 -199272246 - AluSx SINE Alu -12 300 1 280 232 70 35 chr4 3056101 3056139 -199272208 - L1ME LINE L1 -397 5724 5689 883 107 0 29 chr4 3056146 3056286 -199272061 - AluSg/x SINE Alu -10 302 167 232 331 89 8 chr4 3056375 3056499 -199271848 - L1ME LINE L1 -519 5602 5469 501 216 82 0 chr4 3056562 3056659 -199271688 - AluJo SINE Alu -24 288 184 419 147 13 27 chr4 3056662 3056737 -199271610 - MER4A LTR ERV1 -4 660 587 2864 182 16 56 chr4 3056737 3057358 -199270989 + LTR9 LTR ERV1 1 596 -16 1430 135 149 34 chr4 3057381 3057629 -199270718 - MER4A LTR ERV1 -74 590 372 2276 83 0 3 chr4 3057629 3057931 -199270416 + AluSq SINE Alu 1 301 -12 2249 86 0 13 chr4 3057931 3058246 -199270101 + AluY SINE Alu 1 311 0 1430 135 149 34 chr4 3058246 3058292 -199270055 - MER4A LTR ERV1 -291 373 261 1101 173 5 37 chr4 3058348 3058562 -199269785 - AluJo SINE Alu -105 207 1 615 179 0 34 chr4 3059946 3060063 -199268284 - FLAM_C SINE Alu -24 119 7 634 228 152 0 chr4 3060122 3060280 -199268067 + MER21B LTR ERV1 5 186 -677 2171 120 0 0 chr4 3060329 3060628 -199267719 - AluSg SINE Alu -11 299 1 780 272 86 30 chr4 3060735 3061326 -199267021 + L1M4 LINE L1 3321 3944 -2202 1720 90 98 22 chr4 3061469 3061746 -199266601 - AluSg SINE Alu -7 303 6 2022 196 56 0 chr4 3061779 3062172 -199266175 - MER47B DNA MER2_type -2 416 2 2132 92 0 0 chr4 3062414 3062698 -199265649 - AluSc SINE Alu -21 288 5 507 282 89 81 chr4 3062948 3063641 -199264706 + L1MEd LINE L1 580 1255 -4864 720 308 36 17 chr4 3064103 3064258 -199264089 + L1MEd LINE L1 1311 1462 -4848 2531 55 0 3 chr4 3064258 3064568 -199263779 + AluY SINE Alu 1 309 -2 720 308 36 17 chr4 3064568 3064825 -199263522 + L1MEd LINE L1 1462 1731 -4579 1956 146 0 0 chr4 3064888 3065189 -199263158 - AluSx SINE Alu -11 301 1 344 349 31 52 chr4 3065202 3065385 -199262962 + L1MEd LINE L1 1822 2001 -4309 1885 128 0 33 chr4 3065385 3065691 -199262656 - AluSx SINE Alu -16 296 1 344 349 31 52 chr4 3065691 3065736 -199262611 + L1MEd LINE L1 2001 2045 -4265 366 245 39 10 chr4 3066391 3066493 -199261854 - L1ME4a LINE L1 -19 6102 5998 2193 83 3 0 chr4 3066530 3066820 -199261527 - AluSx SINE Alu -16 296 6 1040 258 124 34 chr4 3067396 3067838 -199260509 - MLT1J LTR MaLR -13 498 17 2126 156 48 0 chr4 3067849 3068221 -199260126 + MLT1B LTR MaLR 1 390 0 1470 236 121 23 chr4 3068317 3068788 -199259559 - MLT1E LTR MaLR -69 524 8 2139 98 10 3 chr4 3068862 3069158 -199259189 - AluSx SINE Alu -9 303 6 770 144 24 8 chr4 3069172 3069297 -199259050 - FRAM SINE Alu -22 154 28 194 209 0 31 chr4 3070294 3070423 -199257924 + (CCCCG)n Simple_repeat Simple_repeat 5 129 0 197 62 0 31 chr4 3070458 3070490 -199257857 + (CCCCG)n Simple_repeat Simple_repeat 4 34 0 377 275 0 53 chr4 3070501 3070690 -199257657 + (CCCCG)n Simple_repeat Simple_repeat 1 179 0 28 61 0 0 chr4 3070839 3070888 -199257459 + GC_rich Low_complexity Low_complexity 1 49 0 528 16 0 0 chr4 3071112 3071173 -199257174 + (CAG)n Simple_repeat Simple_repeat 1 61 0 261 198 0 0 chr4 3071173 3071254 -199257093 + (CCG)n Simple_repeat Simple_repeat 3 83 0 183 100 0 0 chr4 3071256 3071286 -199257061 + (CCCCCG)n Simple_repeat Simple_repeat 4 33 0 233 224 13 66 chr4 3072912 3072988 -199255359 + Tigger2 DNA MER2_type 2414 2485 -233 2094 109 0 0 chr4 3073133 3073418 -199254929 + AluSx SINE Alu 6 290 -22 2071 119 0 0 chr4 3073664 3073950 -199254397 - AluSg SINE Alu -24 286 1 21 57 0 0 chr4 3074003 3074038 -199254309 + AT_rich Low_complexity Low_complexity 1 35 0 737 233 93 23 chr4 3074457 3074672 -199253675 - L2 LINE L2 0 3313 3084 23 0 0 0 chr4 3074688 3074711 -199253636 + AT_rich Low_complexity Low_complexity 1 23 0 416 98 16 0 chr4 3074714 3074775 -199253572 - U7 snRNA snRNA 0 63 2 224 59 29 0 chr4 3074787 3074821 -199253526 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1616 154 0 45 chr4 3074828 3074968 -199253379 - AluSx SINE Alu -39 273 151 2238 67 0 54 chr4 3074968 3075283 -199253064 - AluY SINE Alu -13 298 1 1616 154 0 45 chr4 3075283 3075428 -199252919 - AluSx SINE Alu -161 151 1 202 191 24 0 chr4 3075433 3075475 -199252872 - L2 LINE L2 -239 3074 3032 840 179 6 23 chr4 3075480 3075653 -199252694 - FRAM SINE Alu -6 170 1 1039 266 79 40 chr4 3075654 3076156 -199252191 - L2 LINE L2 -277 3036 2503 2138 126 0 0 chr4 3076326 3076627 -199251720 - AluSq SINE Alu -12 301 1 3797 184 37 1 chr4 3076658 3077451 -199250896 - L1M4 LINE L1 -809 5337 4517 1300 183 70 4 chr4 3077451 3077724 -199250623 - MER58B DNA MER1_type -8 333 43 2325 74 6 3 chr4 3077779 3078090 -199250257 - AluSp SINE Alu -1 312 1 367 296 127 55 chr4 3078144 3078397 -199249950 - L1ME4a LINE L1 -11 6110 5840 278 304 236 20 chr4 3078750 3078898 -199249449 + MER5A DNA MER1_type 10 189 0 473 267 182 15 chr4 3079143 3079420 -199248927 - L2 LINE L2 -209 3104 2784 1409 170 24 35 chr4 3079471 3079760 -199248587 + AluJo SINE Alu 1 286 -26 459 0 0 0 chr4 3079763 3079814 -199248533 + (CA)n Simple_repeat Simple_repeat 2 52 0 2624 149 99 62 chr4 3079854 3080418 -199247929 + L1MD2 LINE L1 5484 6068 -291 817 147 0 0 chr4 3080419 3080555 -199247792 - AluSg/x SINE Alu -1 311 176 2079 122 0 3 chr4 3080632 3080928 -199247419 + AluSx SINE Alu 1 295 -17 2281 88 0 3 chr4 3080957 3081263 -199247084 + AluY SINE Alu 1 305 -6 1948 104 24 0 chr4 3081370 3081658 -199246689 - AluSx SINE Alu -17 295 1 424 294 28 28 chr4 3082317 3082494 -199245853 - MER104 DNA Tc2 -3 177 1 349 290 65 0 chr4 3082500 3082607 -199245740 + MIR SINE MIR 32 145 -117 1506 202 10 10 chr4 3082614 3082921 -199245426 + AluJo SINE Alu 1 307 -5 180 381 48 0 chr4 3083013 3083097 -199245250 + L2 LINE L2 3185 3272 0 2059 94 49 0 chr4 3084072 3084360 -199243987 - AluSp SINE Alu -9 304 3 2144 83 41 0 chr4 3084409 3084699 -199243648 - AluY SINE Alu -9 302 1 978 204 102 32 chr4 3084707 3084991 -199243356 - L1MB3 LINE L1 -1 6182 5879 351 288 141 18 chr4 3085245 3085408 -199242939 + MIR SINE MIR 51 233 -29 2367 68 0 0 chr4 3085485 3085778 -199242569 - AluY SINE Alu -18 293 1 232 298 0 18 chr4 3086498 3086555 -199241792 - MER5A DNA MER1_type -3 186 131 435 286 52 75 chr4 3086839 3087052 -199241295 + L1ME LINE L1 4474 4681 -1465 2043 148 0 0 chr4 3087055 3087366 -199240981 + AluSq SINE Alu 1 311 -2 586 205 8 33 chr4 3087829 3087951 -199240396 + MLT1A2 LTR MaLR 256 374 0 296 274 69 10 chr4 3088046 3088148 -199240199 + L1ME LINE L1 5552 5659 -462 1933 108 7 7 chr4 3088259 3088545 -199239802 - AluSg SINE Alu -24 286 1 1580 174 17 7 chr4 3088619 3088907 -199239440 - AluJo SINE Alu -21 291 1 2172 251 68 22 chr4 3088945 3089591 -199238756 + L1MEc LINE L1 1 676 -5720 305 248 74 33 chr4 3089585 3089706 -199238641 + L1MEc LINE L1 1847 1972 -4424 * 1200 204 59 64 chr4 3089706 3090094 -199238253 + MLT1D LTR MaLR 1 386 -119 8494 59 7 172 chr4 3090138 3091766 -199236581 - SVA Other Other 0 1386 28 566 156 15 82 chr4 3091769 3091904 -199236443 + MLT1D LTR MaLR 377 502 -3 420 242 129 16 chr4 3091904 3092090 -199236257 + L1MEc LINE L1 1985 2191 -4205 3901 247 58 31 chr4 3092099 3093062 -199235285 + L1MEc LINE L1 2179 3115 -3100 1612 198 0 0 chr4 3093062 3093355 -199234992 + AluJo SINE Alu 1 293 -19 3901 247 58 31 chr4 3093355 3093578 -199234769 + L1MEc LINE L1 3115 3331 -2884 2197 113 0 0 chr4 3093578 3093879 -199234468 + AluSx SINE Alu 4 304 -8 3901 247 58 31 chr4 3093879 3094045 -199234302 + L1MEc LINE L1 3331 3568 -2647 1001 159 246 10 chr4 3094050 3094359 -199233988 + Charlie5 DNA MER1_type 2243 2624 0 1425 158 54 28 chr4 3095180 3095497 -199232850 - L1MC3 LINE L1 0 7785 7461 183 289 0 0 chr4 3096371 3096416 -199231931 + MIR SINE MIR 106 150 -112 1825 131 3 3 chr4 3096971 3097254 -199231093 - AluJb SINE Alu -29 283 1 21 0 0 0 chr4 3099413 3099434 -199228913 + AT_rich Low_complexity Low_complexity 1 21 0 2429 62 0 3 chr4 3099447 3099751 -199228596 - AluSp SINE Alu -10 303 1 28 29 0 0 chr4 3100125 3100160 -199228187 + AT_rich Low_complexity Low_complexity 1 35 0 1060 117 12 0 chr4 3100170 3100332 -199228015 - L1MA2 LINE L1 -7 6297 6134 630 137 21 0 chr4 3100333 3100428 -199227919 - AluSg/x SINE Alu -20 289 193 730 45 0 0 chr4 3100434 3100523 -199227824 - AluS SINE Alu -223 90 2 2161 101 7 0 chr4 3100557 3100855 -199227492 + AluSx SINE Alu 5 304 -8 1538 190 37 0 chr4 3100858 3101158 -199227189 + AluJb SINE Alu 1 311 -1 257 191 0 0 chr4 3101176 3101223 -199227124 - L1MA2 LINE L1 -188 6116 6070 536 262 126 78 chr4 3101714 3102008 -199226339 + L2 LINE L2 3005 3312 -1 1560 161 57 0 chr4 3102314 3102593 -199225754 + AluJb SINE Alu 1 295 -17 261 328 41 25 chr4 3102716 3102838 -199225509 + L2 LINE L2 2671 2794 -520 201 341 78 23 chr4 3102845 3102974 -199225373 + L2 LINE L2 2926 3061 -252 260 327 103 33 chr4 3104234 3104448 -199223899 + MIR SINE MIR 34 262 0 386 198 83 87 chr4 3104976 3104989 -199223358 - HAL1 LINE L1 -4 2503 2491 1607 188 0 33 chr4 3104989 3105293 -199223054 + AluJo SINE Alu 1 294 -18 386 198 83 87 chr4 3105293 3105440 -199222907 - HAL1 LINE L1 -16 2491 2341 2264 91 7 0 chr4 3105440 3105749 -199222598 - AluSp SINE Alu 0 312 2 386 198 83 87 chr4 3105749 3105828 -199222519 - HAL1 LINE L1 -166 2341 2263 934 274 151 47 chr4 3106388 3106984 -199221363 - HAL1 LINE L1 -408 2099 1442 583 228 56 28 chr4 3107003 3107183 -199221164 - HAL1 LINE L1 -1145 1362 1178 969 191 12 0 chr4 3107241 3107409 -199220938 - AluJo/FRAM SINE Alu -8 304 135 2214 114 0 0 chr4 3107409 3107706 -199220641 - AluSx SINE Alu -2 310 14 517 276 98 91 chr4 3107722 3108428 -199219919 - HAL1 LINE L1 -1796 711 1 2001 257 70 20 chr4 3108507 3109211 -199219136 - L1ME3A LINE L1 -16 6154 5416 2236 128 0 0 chr4 3109557 3109855 -199218492 - AluSx SINE Alu -14 298 1 3763 109 0 4 chr4 3110118 3110631 -199217716 - MER9 LTR ERVK 0 511 1 394 294 9 0 chr4 3112770 3112879 -199215468 - L2 LINE L2 -1 3271 3162 306 206 41 0 chr4 3113194 3113267 -199215080 + Charlie7 DNA MER1_type 379 454 -2158 184 216 0 0 chr4 3113283 3113320 -199215027 + MIR SINE MIR 201 237 -25 828 224 114 93 chr4 3113615 3113781 -199214566 - L1MC5 LINE L1 -121 7840 7679 1696 190 17 0 chr4 3113781 3114070 -199214277 + AluJb SINE Alu 1 294 -18 828 224 114 93 chr4 3114070 3114462 -199213885 - L1MC5 LINE L1 -282 7679 7270 314 311 57 0 chr4 3115187 3115293 -199213054 + HAL1 LINE L1 1582 1693 -814 237 286 65 32 chr4 3115886 3116040 -199212307 + HAL1b LINE L1 753 911 -437 917 240 45 0 chr4 3116089 3116289 -199212058 - MER58A DNA MER1_type -11 213 5 848 180 51 0 chr4 3116410 3116588 -199211759 + MER53 DNA DNA 1 187 -2 257 150 0 0 chr4 3116641 3116681 -199211666 + MER1B DNA MER1_type 1 40 -297 2258 133 18 3 chr4 3116681 3117013 -199211334 + MER1B DNA MER1_type 1 337 0 1434 158 74 37 chr4 3117819 3118116 -199210231 + AluJb SINE Alu 1 308 -4 770 223 150 0 chr4 3119423 3119616 -199208731 - MER58A DNA MER1_type -2 222 1 1092 168 59 25 chr4 3119707 3119742 -199208605 + AluJo SINE Alu 85 117 -195 180 0 0 0 chr4 3119742 3119762 -199208585 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1092 168 59 25 chr4 3119762 3119928 -199208419 + AluJo SINE Alu 117 293 -19 29 60 0 0 chr4 3121466 3121516 -199206831 + AT_rich Low_complexity Low_complexity 1 50 0 1921 125 0 58 chr4 3122266 3122579 -199205768 - AluSx SINE Alu -17 295 1 24 53 0 0 chr4 3122767 3122805 -199205542 + AT_rich Low_complexity Low_complexity 1 38 0 242 120 220 0 chr4 3123856 3123906 -199204441 - AluSc SINE Alu 0 299 239 2341 109 0 0 chr4 3123907 3124209 -199204138 + AluSx SINE Alu 1 302 -10 1792 140 0 0 chr4 3124209 3124458 -199203889 - AluSx SINE Alu -62 250 1 22 0 0 0 chr4 3124721 3124743 -199203604 + AT_rich Low_complexity Low_complexity 1 22 0 2361 196 73 14 chr4 3124984 3125582 -199202765 - L1MB3 LINE L1 -7 6176 5548 1554 159 24 57 chr4 3129428 3129724 -199198623 + AluJb SINE Alu 2 287 -25 23 0 0 0 chr4 3129746 3129769 -199198578 + AT_rich Low_complexity Low_complexity 1 23 0 1852 163 27 0 chr4 3130947 3131247 -199197100 - AluJo SINE Alu -4 308 1 527 128 0 13 chr4 3131483 3131561 -199196786 + AluSc SINE Alu 216 292 -17 458 236 222 22 chr4 3132766 3132991 -199195356 - L1ME4a LINE L1 -16 6105 5836 2133 104 49 0 chr4 3133143 3133431 -199194916 - AluSg SINE Alu -8 302 1 1368 194 73 60 chr4 3133452 3133656 -199194691 - L1MB7 LINE L1 0 6178 5978 2268 79 7 0 chr4 3133656 3133934 -199194413 + AluSx SINE Alu 15 294 -18 1368 194 73 60 chr4 3133934 3134239 -199194108 - L1MB7 LINE L1 -200 5978 5628 677 190 12 0 chr4 3134291 3134454 -199193893 + CT-rich Low_complexity Low_complexity 4 168 0 1479 108 33 21 chr4 3134465 3134706 -199193641 - L1PB3 LINE L1 0 6154 5911 1984 146 7 10 chr4 3134830 3135138 -199193209 - AluSx SINE Alu -5 307 1 2060 145 3 0 chr4 3135418 3135722 -199192625 - AluSx SINE Alu -7 305 1 2123 118 3 25 chr4 3136198 3136513 -199191834 + AluSg SINE Alu 1 308 -2 1899 144 6 6 chr4 3137705 3138017 -199190330 + AluSx SINE Alu 1 312 0 27 29 0 0 chr4 3138522 3138556 -199189791 + AT_rich Low_complexity Low_complexity 1 34 0 2415 99 0 0 chr4 3139379 3139691 -199188656 + AluSx SINE Alu 1 312 0 2499 83 3 6 chr4 3139813 3140127 -199188220 - AluSp SINE Alu 0 313 1 310 250 177 39 chr4 3140165 3140397 -199187950 + L1ME4a LINE L1 5732 5995 -126 403 160 75 11 chr4 3140403 3140497 -199187850 + L1ME4a LINE L1 6021 6120 -1 2217 128 0 0 chr4 3140542 3140840 -199187507 - AluSg SINE Alu -12 298 1 901 299 46 46 chr4 3142280 3142801 -199185546 - ERVL LTR ERVL -351 5413 4893 1879 141 3 46 chr4 3144598 3144740 -199183607 + AluSx SINE Alu 5 129 -183 2539 48 0 3 chr4 3144740 3145032 -199183315 + AluY SINE Alu 1 291 -20 1879 141 3 46 chr4 3145032 3145195 -199183152 + AluSx SINE Alu 129 297 -15 279 266 0 0 chr4 3145350 3145414 -199182933 - MER3 DNA MER1_type -131 78 15 2195 118 0 32 chr4 3145519 3145832 -199182515 - AluSq SINE Alu -10 303 1 913 236 5 5 chr4 3146399 3146594 -199181753 + MER3 DNA MER1_type 15 209 0 198 191 0 0 chr4 3146903 3146945 -199181402 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 1884 112 26 59 chr4 3146959 3146979 -199181368 + MER1B DNA MER1_type 47 66 -2646 2208 88 0 11 chr4 3146979 3147294 -199181053 + AluY SINE Alu 1 312 0 1884 112 26 59 chr4 3147294 3147383 -199180964 + MER1B DNA MER1_type 66 156 -2556 1700 116 100 107 chr4 3147383 3147814 -199180533 - MSTA LTR MaLR 0 428 1 1884 112 26 59 chr4 3147814 3148005 -199180342 + MER1B DNA MER1_type 156 339 0 217 200 60 0 chr4 3148006 3148056 -199180291 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 210 288 34 0 chr4 3148067 3148126 -199180221 + L2 LINE L2 2569 2629 -685 23 0 0 0 chr4 3148140 3148163 -199180184 + AT_rich Low_complexity Low_complexity 1 23 0 1016 168 7 0 chr4 3148163 3148318 -199180029 - AluJb SINE Alu -23 289 134 2378 86 0 3 chr4 3148318 3148622 -199179725 - AluSg SINE Alu -7 303 1 972 219 129 4 chr4 3148626 3148905 -199179442 - L1MB8 LINE L1 -6 6172 5859 1610 93 4 31 chr4 3148950 3149175 -199179172 - AluSc SINE Alu -90 219 1 1084 168 13 5 chr4 3149267 3149573 -199178774 - MLT1A1 LTR MaLR 0 374 1 300 228 78 5 chr4 3149753 3149842 -199178505 + MIR SINE MIR 48 140 -68 1768 151 34 7 chr4 3149865 3150156 -199178191 + AluJo SINE Alu 1 299 -13 184 0 0 88 chr4 3150474 3150508 -199177839 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 2154 105 0 14 chr4 3151426 3151749 -199176598 - AluY SINE Alu 0 319 1 1398 117 77 55 chr4 3151755 3151824 -199176523 - L1MA8 LINE L1 -1 6290 6224 1889 137 0 56 chr4 3151824 3152145 -199176202 + AluSg SINE Alu 1 303 -7 1398 117 77 55 chr4 3152145 3152349 -199175998 - L1MA8 LINE L1 -67 6224 6011 2201 105 14 0 chr4 3152358 3152644 -199175703 - AluSx SINE Alu -22 290 1 327 254 70 56 chr4 3153614 3153756 -199174591 - MER68 LTR ERV1 -66 496 353 789 158 30 8 chr4 3153768 3153901 -199174446 - MER68 LTR ERV1 -310 252 117 424 255 178 66 chr4 3153965 3154214 -199174133 - L1M4 LINE L1 -1095 5051 4744 1716 147 34 0 chr4 3154214 3154507 -199173840 - AluJo SINE Alu -9 303 1 424 255 178 66 chr4 3154507 3154634 -199173713 - L1M4 LINE L1 -1402 4744 4633 226 347 32 0 chr4 3154639 3154734 -199173613 - L1M4 LINE L1 -1567 4579 4482 37335 95 10 12 chr4 3157145 3163296 -199165051 - L1PA7 LINE L1 0 6154 11 1932 131 0 3 chr4 3163305 3163595 -199164752 - AluSg SINE Alu -21 289 1 847 151 19 25 chr4 3164927 3165086 -199163261 + AluJb SINE Alu 110 267 -45 3461 226 63 79 chr4 3165099 3165231 -199163116 - L1MEc LINE L1 -4963 1433 1300 2347 87 0 0 chr4 3165231 3165542 -199162805 - AluY SINE Alu 0 311 1 3461 226 63 79 chr4 3165542 3165801 -199162546 - L1MEc LINE L1 -5096 1300 1039 2077 125 7 0 chr4 3165801 3166098 -199162249 - AluSx SINE Alu -13 299 1 3461 226 63 79 chr4 3166098 3167137 -199161210 - L1MEc LINE L1 -5357 1039 24 200 309 125 44 chr4 3167140 3167276 -199161071 + L2 LINE L2 3117 3263 -9 2075 113 3 19 chr4 3167683 3168001 -199160346 - AluSq SINE Alu 0 313 1 272 348 8 59 chr4 3168196 3168314 -199160033 + L2 LINE L2 3202 3313 0 2427 53 0 10 chr4 3169893 3170195 -199158152 - AluY SINE Alu -12 299 1 183 80 0 0 chr4 3171141 3171166 -199157181 + (TTTC)n Simple_repeat Simple_repeat 3 27 0 2408 68 0 0 chr4 3172240 3172551 -199155796 - AluY SINE Alu 0 311 1 191 258 103 72 chr4 3174140 3174237 -199154110 + MIR SINE MIR 33 132 -76 297 56 0 0 chr4 3174973 3175009 -199153338 - U2 snRNA snRNA -152 36 1 210 71 0 0 chr4 3175813 3175841 -199152506 + (TG)n Simple_repeat Simple_repeat 2 29 0 245 297 11 0 chr4 3175856 3175947 -199152400 + (TG)n Simple_repeat Simple_repeat 2 93 0 299 327 0 0 chr4 3175962 3176112 -199152235 + (TG)n Simple_repeat Simple_repeat 2 151 0 223 221 0 29 chr4 3177020 3177088 -199151259 + G-rich Low_complexity Low_complexity 1 66 0 2057 107 3 20 chr4 3177106 3177406 -199150941 - AluSx SINE Alu -17 295 1 214 304 111 35 chr4 3178842 3179013 -199149334 - MIR SINE MIR -71 191 8 249 33 0 0 chr4 3179097 3179127 -199149220 + (TTTCC)n Simple_repeat Simple_repeat 1 30 0 1524 169 18 14 chr4 3179127 3179406 -199148941 - AluJb SINE Alu -32 280 1 670 290 238 30 chr4 3180124 3181601 -199146746 - L2 LINE L2 -39 3274 1466 232 194 32 32 chr4 3181744 3181806 -199146541 + L1ME4a LINE L1 5724 5785 -379 1472 153 102 4 chr4 3181855 3182130 -199146217 + AluJb SINE Alu 1 302 -10 330 115 0 51 chr4 3182135 3182213 -199146134 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 314 335 92 13 chr4 3182450 3182602 -199145745 + L1ME4a LINE L1 5952 6115 -6 506 191 16 165 chr4 3182963 3183063 -199145284 - MER5A DNA MER1_type -24 165 52 2239 78 0 38 chr4 3183063 3183383 -199144964 - AluY SINE Alu -3 308 1 2062 90 0 0 chr4 3183383 3183660 -199144687 - AluY SINE Alu -15 296 20 506 191 16 165 chr4 3183660 3183752 -199144595 - MER5A DNA MER1_type -135 54 1 416 269 77 13 chr4 3184362 3184518 -199143829 + MER97b DNA MER1_type? 14 179 -874 203 186 17 85 chr4 3184968 3185027 -199143320 - MIR SINE MIR -119 143 89 3032 133 64 2 chr4 3185468 3185966 -199142381 + L1MB3 LINE L1 5612 6140 -43 1527 188 31 0 chr4 3185967 3186260 -199142087 + AluJb SINE Alu 1 302 -10 1628 149 26 36 chr4 3186286 3186594 -199141753 + AluJo SINE Alu 1 305 -7 1127 135 214 44 chr4 3186679 3186931 -199141416 + AluJo SINE Alu 1 295 -7 318 250 0 0 chr4 3186950 3187014 -199141333 + HAL1 LINE L1 1816 1879 -628 2340 77 10 3 chr4 3187385 3187696 -199140651 - AluSp SINE Alu 0 313 1 263 260 35 75 chr4 3187752 3187925 -199140422 + HAL1b LINE L1 746 911 -437 357 289 100 22 chr4 3188097 3188277 -199140070 - MLT1K LTR MaLR 0 588 395 1334 208 0 36 chr4 3188299 3188602 -199139745 - AluJo SINE Alu -20 292 1 825 241 45 0 chr4 3189844 3190043 -199138304 + MER3 DNA MER1_type 2 209 0 587 271 105 22 chr4 3191856 3192085 -199136262 - MLT1J2 LTR MaLR 0 450 203 1826 164 0 7 chr4 3192679 3192978 -199135369 + AluJb SINE Alu 1 297 -15 642 298 49 27 chr4 3193793 3194018 -199134329 - MIR SINE MIR -19 243 14 2109 126 3 0 chr4 3194440 3194749 -199133598 - AluSx SINE Alu -2 310 1 2172 88 10 0 chr4 3195485 3195781 -199132566 + AluSq SINE Alu 1 299 -14 2153 117 0 3 chr4 3197471 3197778 -199130569 + AluSx SINE Alu 1 306 -6 360 244 352 0 chr4 3197990 3198166 -199130181 - MER5C DNA MER1_type -2 322 85 626 271 128 44 chr4 3198726 3198954 -199129393 - L1ME1 LINE L1 -1 6165 5891 1431 177 37 31 chr4 3198954 3199248 -199129099 + AluJo SINE Alu 1 296 -16 626 271 128 44 chr4 3199248 3199403 -199128944 - L1ME1 LINE L1 -275 5891 5750 30 17 0 34 chr4 3200746 3200772 -199127575 + AT_rich Low_complexity Low_complexity 1 26 -31 672 202 8 8 chr4 3200772 3200901 -199127446 + FLAM_C SINE Alu 3 131 -2 30 17 0 34 chr4 3200901 3200912 -199127435 + AT_rich Low_complexity Low_complexity 26 36 -21 1542 173 3 53 chr4 3200912 3201212 -199127135 + AluJo SINE Alu 3 287 -15 30 17 0 34 chr4 3201212 3201232 -199127115 + AT_rich Low_complexity Low_complexity 36 57 0 267 221 104 52 chr4 3201326 3201480 -199126867 - L1ME4a LINE L1 -5 6116 5955 1301 153 35 9 chr4 3201784 3202013 -199126334 + MER46A DNA MER2_type 2 236 0 28 48 0 0 chr4 3202128 3202170 -199126177 + AT_rich Low_complexity Low_complexity 1 42 0 2325 81 0 7 chr4 3207120 3207428 -199120919 - AluSx SINE Alu -6 306 1 21 36 0 0 chr4 3207896 3207924 -199120423 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr4 3208368 3208402 -199119945 + AT_rich Low_complexity Low_complexity 1 34 0 715 297 50 5 chr4 3209611 3209830 -199118517 - MIR SINE MIR -16 246 18 225 354 0 0 chr4 3210409 3210491 -199117856 - L2 LINE L2 -9 3304 3223 236 321 104 19 chr4 3211734 3211840 -199116507 + L2 LINE L2 3199 3313 0 258 288 88 40 chr4 3212634 3212759 -199115588 + MIR SINE MIR 132 262 0 2688 7 0 0 chr4 3212968 3213264 -199115083 + AluYa5 SINE Alu 1 296 -15 2356 85 0 0 chr4 3214576 3214869 -199113478 + AluSx SINE Alu 2 294 -18 183 156 0 0 chr4 3215158 3215190 -199113157 + (TG)n Simple_repeat Simple_repeat 1 32 0 340 325 124 12 chr4 3216997 3217166 -199111181 + MIR SINE MIR 8 195 -67 470 244 0 9 chr4 3218101 3218216 -199110131 - L1MB8 LINE L1 -1 6177 6064 338 346 45 13 chr4 3218344 3218500 -199109847 + MIR SINE MIR 39 199 -63 23 0 0 0 chr4 3222082 3222105 -199106242 + AT_rich Low_complexity Low_complexity 1 23 0 819 231 0 6 chr4 3222549 3222718 -199105629 + AluJb SINE Alu 138 305 -7 186 143 0 0 chr4 3224852 3224887 -199103460 + (GGA)n Simple_repeat Simple_repeat 1 35 0 184 143 71 0 chr4 3225239 3225309 -199103038 + (CA)n Simple_repeat Simple_repeat 1 75 0 461 139 66 12 chr4 3225355 3225521 -199102826 + (CA)n Simple_repeat Simple_repeat 1 175 0 264 196 54 18 chr4 3225603 3225771 -199102576 + (CA)n Simple_repeat Simple_repeat 1 174 0 405 158 67 6 chr4 3225786 3225950 -199102397 + (CA)n Simple_repeat Simple_repeat 1 174 0 1687 219 34 8 chr4 3226746 3227098 -199101249 - MLT1A1 LTR MaLR 0 365 5 215 314 25 59 chr4 3227369 3227487 -199100860 - L2 LINE L2 0 3272 3159 2052 209 128 24 chr4 3228749 3229256 -199099091 - MER68 LTR ERV1 -2 560 1 2317 95 0 0 chr4 3233259 3233564 -199094783 - AluSq SINE Alu -8 305 1 192 315 158 0 chr4 3243417 3243544 -199084803 - MIR3 SINE MIR -61 147 1 290 274 33 16 chr4 3247681 3247807 -199080540 - MIR SINE MIR -62 146 56 261 83 0 0 chr4 3247862 3247898 -199080449 + (T)n Simple_repeat Simple_repeat 1 36 0 393 355 29 6 chr4 3248730 3248902 -199079445 - MIR SINE MIR -66 196 21 274 289 22 37 chr4 3249043 3249178 -199079169 - L1ME4a LINE L1 -11 6110 5978 180 172 0 0 chr4 3249298 3249327 -199079020 + SUBTEL_sa Satellite Satellite 129 157 -17 499 267 67 0 chr4 3249849 3249999 -199078348 + MIR SINE MIR 40 199 -63 271 279 0 13 chr4 3250289 3250368 -199077979 - L2 LINE L2 -208 3064 2987 2328 72 26 0 chr4 3251410 3251714 -199076633 - AluSq SINE Alu -1 312 1 282 298 36 0 chr4 3251741 3251825 -199076522 + MIR SINE MIR 50 136 -72 28 0 0 0 chr4 3252163 3252191 -199076156 + GC_rich Low_complexity Low_complexity 1 28 0 299 318 98 0 chr4 3252817 3252949 -199075398 - L2 LINE L2 -50 3263 3119 188 244 56 11 chr4 3252990 3253080 -199075267 - L2 LINE L2 -339 2975 2882 244 331 19 69 chr4 3253409 3253569 -199074778 - L2 LINE L2 -554 2760 2609 246 259 17 0 chr4 3253932 3253990 -199074357 + MER63 DNA MER1_type 732 790 -272 321 345 104 36 chr4 3254783 3254953 -199073394 + L1M3 LINE L1 3975 4169 -1977 2267 91 10 0 chr4 3254953 3255262 -199073085 + AluSx SINE Alu 1 312 0 321 345 104 36 chr4 3255262 3255340 -199073007 + L1M3 LINE L1 4169 4240 -1906 269 274 105 8 chr4 3255756 3255880 -199072467 + L1M3 LINE L1 5506 5641 -539 3392 216 88 70 chr4 3255896 3255954 -199072393 - Charlie1 DNA MER1_type 0 2761 2706 2427 77 0 0 chr4 3255954 3256265 -199072082 + AluY SINE Alu 1 311 0 3392 216 88 70 chr4 3256265 3256721 -199071626 - Charlie1 DNA MER1_type -55 2706 2260 2143 58 0 81 chr4 3256721 3257031 -199071316 - AluY SINE Alu -13 298 14 3392 216 88 70 chr4 3257031 3257717 -199070630 - Charlie1 DNA MER1_type -501 2260 1538 256 340 42 14 chr4 3258109 3258253 -199070094 - L2 LINE L2 -55 3258 3111 251 353 77 32 chr4 3259721 3259942 -199068405 - L1ME4a LINE L1 -1910 5898 5668 261 169 51 0 chr4 3259959 3260018 -199068329 + HAL1 LINE L1 2026 2087 -420 720 309 62 7 chr4 3260039 3260343 -199068004 - L1ME4a LINE L1 -1176 4970 4650 2951 175 39 24 chr4 3260343 3260386 -199067961 - L1MB3 LINE L1 0 6183 6142 2318 86 0 0 chr4 3260386 3260699 -199067648 - AluSq SINE Alu 0 313 1 2951 175 39 24 chr4 3260699 3261061 -199067286 - L1MB3 LINE L1 -41 6142 5764 1824 162 3 3 chr4 3261061 3261364 -199066983 - AluJb SINE Alu -9 303 1 2951 175 39 24 chr4 3261364 3261547 -199066800 - L1MB3 LINE L1 -419 5764 5585 241 230 68 14 chr4 3261568 3261642 -199066705 - L1ME LINE L1 -476 6440 6363 1726 166 7 0 chr4 3261757 3262068 -199066279 + AluJo SINE Alu 1 312 0 499 167 67 0 chr4 3262169 3262289 -199066058 + L1PA13 LINE L1 5926 6053 -110 2617 26 0 3 chr4 3262649 3262956 -199065391 + AluY SINE Alu 1 306 -5 1980 118 26 3 chr4 3262967 3263273 -199065074 + AluSp SINE Alu 1 313 0 2155 87 0 14 chr4 3263427 3263714 -199064633 + AluSx SINE Alu 13 295 -17 393 296 82 25 chr4 3264021 3264264 -199064083 + MLT2E LTR ERVL 34 290 -338 255 248 17 94 chr4 3266808 3266925 -199061422 - L1MCc LINE L1 -6250 872 765 4783 243 107 79 chr4 3266925 3267254 -199061093 - L1MCc LINE L1 -957 5984 5666 2094 114 3 22 chr4 3267254 3267569 -199060778 - AluSq SINE Alu -4 309 1 4783 243 107 79 chr4 3267569 3268283 -199060064 - L1MCc LINE L1 -1275 5666 4973 522 46 0 0 chr4 3268283 3268348 -199059999 + (TTCC)n Simple_repeat Simple_repeat 1 65 0 1921 141 0 3 chr4 3268349 3268633 -199059714 - AluSx SINE Alu -29 283 1 4783 243 107 79 chr4 3268633 3269336 -199059011 - L1MCc LINE L1 -1968 4973 4291 2047 73 4 11 chr4 3269336 3269637 -199058710 - AluSg SINE Alu 0 311 13 4783 243 107 79 chr4 3269637 3270491 -199057856 - L1MCc LINE L1 -2650 4291 3462 2383 80 0 3 chr4 3270491 3270803 -199057544 - AluY SINE Alu 0 311 1 4783 243 107 79 chr4 3270803 3271256 -199057091 - L1MCc LINE L1 -3479 3462 3023 2224 113 0 6 chr4 3271256 3271567 -199056780 - AluSq SINE Alu -4 309 1 4783 243 107 79 chr4 3271567 3272936 -199055411 - L1MCc LINE L1 -3918 3023 1263 305 286 62 19 chr4 3273465 3273626 -199054721 - L1MCc LINE L1 -6235 188 21 912 264 134 26 chr4 3273658 3274045 -199054302 + Zaphod DNA AcHobo 349 777 -3254 2319 93 3 0 chr4 3274046 3274357 -199053990 - AluSx SINE Alu 0 312 1 4573 232 95 25 chr4 3274379 3275044 -199053303 + Zaphod DNA AcHobo 2409 3026 -1005 2182 101 53 63 chr4 3275044 3275422 -199052925 + THE1C LTR MaLR 1 374 -1 4573 232 95 25 chr4 3275422 3275689 -199052658 + Zaphod DNA AcHobo 3026 3273 -758 2054 129 0 3 chr4 3275689 3275983 -199052364 + AluSx SINE Alu 1 293 -19 4573 232 95 25 chr4 3275983 3276561 -199051786 + Zaphod DNA AcHobo 3273 4026 -5 1381 286 54 40 chr4 3277235 3277502 -199050845 + L1ME LINE L1 466 728 -5354 2074 131 3 0 chr4 3277502 3277800 -199050547 - AluSx SINE Alu -12 300 2 1381 286 54 40 chr4 3277800 3278439 -199049908 + L1ME LINE L1 728 1266 -4816 2256 106 0 0 chr4 3278458 3278769 -199049578 - AluY SINE Alu 0 311 1 340 297 101 0 chr4 3278822 3278970 -199049377 - L1ME3A LINE L1 -219 5951 5789 553 194 36 61 chr4 3279069 3279234 -199049113 + LTR33 LTR ERVL 5 165 -356 532 276 76 0 chr4 3279246 3279431 -199048916 + LTR33 LTR ERVL 303 501 -20 1862 96 75 4 chr4 3280448 3280728 -199047619 + AluSq SINE Alu 1 300 -13 1056 158 6 0 chr4 3280744 3280909 -199047438 + AluJb SINE Alu 141 306 -6 1474 216 20 73 chr4 3280938 3281336 -199047011 + MLT2D LTR ERVL 30 406 -8 212 205 0 0 chr4 3282936 3282975 -199045372 + MIR SINE MIR 102 140 -68 269 173 0 0 chr4 3285341 3285393 -199042954 - L1MB2 LINE L1 -1 6170 6119 1992 126 3 3 chr4 3285398 3285692 -199042655 - AluJb SINE Alu -18 294 1 1532 172 75 3 chr4 3285711 3285747 -199042600 - L1MB3 LINE L1 -1 6182 6150 3496 169 64 7 chr4 3285747 3286439 -199041908 - L1MA7 LINE L1 -3 6288 5558 1532 172 75 3 chr4 3286439 3286734 -199041613 - L1MB3 LINE L1 -33 6150 5827 1902 137 3 3 chr4 3287535 3287835 -199040512 - AluSx SINE Alu -12 300 1 489 301 115 27 chr4 3287837 3288133 -199040214 + LTR33 LTR ERVL 197 518 -3 236 123 7 101 chr4 3289062 3289200 -199039147 + (CCCCG)n Simple_repeat Simple_repeat 1 125 0 234 217 22 43 chr4 3289232 3289324 -199039023 + G-rich Low_complexity Low_complexity 6 95 0 28 99 0 0 chr4 3289352 3289443 -199038904 + GC_rich Low_complexity Low_complexity 1 91 0 263 83 0 21 chr4 3289487 3289535 -199038812 + (CGGGG)n Simple_repeat Simple_repeat 4 50 0 28 105 0 0 chr4 3289551 3289656 -199038691 + GC_rich Low_complexity Low_complexity 1 105 0 281 256 64 32 chr4 3290290 3290415 -199037932 + MIR SINE MIR 5 133 -75 2291 89 3 3 chr4 3291676 3291980 -199036367 + AluSq SINE Alu 1 304 -9 182 79 0 53 chr4 3291989 3292027 -199036320 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 642 291 122 33 chr4 3292165 3292471 -199035876 - MLT1D LTR MaLR 0 505 143 1780 167 3 25 chr4 3292471 3292789 -199035558 - AluJo SINE Alu -1 311 1 642 291 122 33 chr4 3292789 3292942 -199035405 - MLT1D LTR MaLR -362 143 5 1335 243 179 11 chr4 3294013 3294654 -199033693 - HAL1 LINE L1 -611 1896 1148 1039 156 39 49 chr4 3294656 3294861 -199033486 - AluJo SINE Alu -18 294 92 1402 261 151 31 chr4 3294868 3295812 -199032535 - L1ME LINE L1 -4872 1208 79 222 275 0 14 chr4 3296334 3296403 -199031944 + MIR SINE MIR 166 233 -29 912 240 154 37 chr4 3296803 3297247 -199031100 - MLT1D LTR MaLR -9 496 1 241 257 0 71 chr4 3297855 3297995 -199030352 + (CTGGGG)n Simple_repeat Simple_repeat 4 133 0 453 219 38 19 chr4 3298216 3298321 -199030026 - MER53 DNA DNA -82 107 1 180 111 0 0 chr4 3299336 3299363 -199028984 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 232 262 278 0 chr4 3300799 3300925 -199027422 + MIR SINE MIR 21 181 -81 1005 247 100 25 chr4 3301208 3301655 -199026692 - MLT1F1 LTR MaLR -114 540 2 254 318 139 20 chr4 3302218 3302369 -199025978 - MLT1-int LTR MaLR -484 887 719 507 266 13 38 chr4 3307446 3307604 -199020743 + MIR SINE MIR 37 190 -72 1470 161 53 5 chr4 3308082 3308412 -199019935 + Tigger4(Zombi) DNA MER2_type 1 2731 0 257 324 54 0 chr4 3308501 3308575 -199019772 + MIR3 SINE MIR 91 168 -40 202 293 9 57 chr4 3308566 3308672 -199019675 + MER5A DNA MER1_type 18 118 -71 * 630 179 9 0 chr4 3308842 3308948 -199019399 + AluJo SINE Alu 36 142 -170 653 150 0 35 chr4 3309524 3309637 -199018710 + FRAM SINE Alu 59 167 -9 523 272 107 35 chr4 3310062 3310352 -199017995 - MLT1D LTR MaLR 0 505 195 85 35 0 0 chr4 3310534 3310647 -199017700 + AT_rich Low_complexity Low_complexity 1 113 0 2342 77 0 7 chr4 3310960 3311268 -199017079 - AluY SINE Alu 0 306 1 2076 204 77 6 chr4 3311372 3311893 -199016454 + MER68 LTR ERV1 3 560 -2 229 156 302 2 chr4 3312267 3312330 -199016017 - MER5C DNA MER1_type -104 85 4 891 154 18 24 chr4 3315709 3315878 -199012469 + AluJo SINE Alu 136 303 -9 1879 129 3 58 chr4 3316001 3316310 -199012037 - AluJo SINE Alu -20 292 1 369 217 24 21 chr4 3317639 3317764 -199010583 - LTR50 LTR ERVL -3 792 654 262 253 77 0 chr4 3318019 3318110 -199010237 - LTR50 LTR ERVL -697 98 1 185 0 0 39 chr4 3319147 3319173 -199009174 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 680 254 24 15 chr4 3319242 3319447 -199008900 + Charlie1 DNA MER1_type 2555 2761 0 370 296 76 41 chr4 3320020 3320414 -199007933 - L1ME4a LINE L1 -267 5854 5533 207 0 0 0 chr4 3320414 3320437 -199007910 + (TG)n Simple_repeat Simple_repeat 1 23 0 * 306 0 0 0 chr4 3320436 3320470 -199007877 + (GA)n Simple_repeat Simple_repeat 1 34 0 232 254 164 26 chr4 3321396 3321585 -199006762 - L1ME4a LINE L1 -2340 5468 5254 962 117 25 77 chr4 3321883 3322079 -199006268 + MSTC LTR MaLR 1 186 -242 9193 166 46 10 chr4 3322079 3322817 -199005530 + L1PB4 LINE L1 3465 4175 -1981 1762 171 21 3 chr4 3322817 3323103 -199005244 - AluJo SINE Alu -21 291 1 9193 166 46 10 chr4 3323103 3324959 -199003388 + L1PB4 LINE L1 4175 6150 -6 874 171 96 21 chr4 3325008 3325195 -199003152 + MSTC LTR MaLR 227 427 -1 328 164 33 0 chr4 3327101 3327162 -199001185 + L2 LINE L2 3250 3312 -1 747 248 205 9 chr4 3327313 3327640 -199000707 - MLT1J LTR MaLR -112 399 9 226 250 45 11 chr4 3327788 3327876 -199000471 + L1ME4a LINE L1 5931 6021 -100 30 0 0 0 chr4 3327985 3328015 -199000332 + AT_rich Low_complexity Low_complexity 1 30 0 228 275 90 36 chr4 3328835 3329002 -198999345 - L1ME3A LINE L1 -214 5956 5781 326 233 12 12 chr4 3329078 3329164 -198999183 - L1ME3A LINE L1 -2322 5486 5401 1796 79 0 5 chr4 3329399 3329615 -198998732 - AluSx SINE Alu -25 285 71 2458 50 7 3 chr4 3329615 3329910 -198998437 - AluY SINE Alu -13 298 1 629 92 0 23 chr4 3329910 3329997 -198998350 - AluSx SINE Alu -226 87 3 471 306 150 22 chr4 3330072 3330618 -198997729 - L1ME3A LINE L1 -1152 4994 4379 571 254 96 44 chr4 3330714 3331099 -198997248 - L1ME3A LINE L1 -2108 4038 3634 212 196 0 39 chr4 3331118 3331169 -198997178 + CT-rich Low_complexity Low_complexity 4 52 0 25 0 0 0 chr4 3331224 3331249 -198997098 + AT_rich Low_complexity Low_complexity 1 25 0 232 191 0 0 chr4 3332225 3332267 -198996080 + Alu SINE Alu 1 42 -260 483 172 0 50 chr4 3332267 3332366 -198995981 + AluJo/FRAM SINE Alu 202 295 -17 2194 102 0 7 chr4 3332369 3332687 -198995660 + AluSx SINE Alu 1 316 0 323 281 109 1 chr4 3332716 3332957 -198995390 + LTR33A LTR ERVL 311 515 -8 376 328 42 0 chr4 3333088 3333207 -198995140 - L2 LINE L2 -1 3271 3148 772 226 28 9 chr4 3333253 3333470 -198994877 + L1MB3 LINE L1 5115 5335 -811 3452 208 64 25 chr4 3333563 3334409 -198993938 + L1MB3 LINE L1 5290 6168 -15 267 213 136 12 chr4 3334468 3334580 -198993767 + MIR3 SINE MIR 41 162 -54 2261 104 3 0 chr4 3334631 3334920 -198993427 - AluSp SINE Alu -22 291 2 1961 150 7 0 chr4 3335763 3336057 -198992290 + AluJo SINE Alu 2 297 -15 2108 180 42 9 chr4 3336074 3336501 -198991846 - MER65A LTR ERV1 0 445 5 456 321 0 39 chr4 3337723 3337980 -198990367 + G-rich Low_complexity Low_complexity 1 246 0 510 310 4 11 chr4 3338032 3338462 -198989885 + G-rich Low_complexity Low_complexity 1 426 0 191 252 65 89 chr4 3339217 3339340 -198989007 - MIR SINE MIR -32 230 111 325 305 57 14 chr4 3339894 3340035 -198988312 - MIR SINE MIR -14 248 102 1162 254 79 10 chr4 3340077 3340471 -198987876 - L1MC2 LINE L1 -6 6338 5918 2353 126 54 28 chr4 3341601 3342029 -198986318 - MER65A LTR ERV1 -6 439 1 3337 96 20 6 chr4 3342029 3342538 -198985809 - MER65A-int LTR ERV1 0 4871 4356 676 139 130 0 chr4 3342560 3342675 -198985672 - BC200 scRNA scRNA -66 134 5 3707 160 94 3 chr4 3342680 3343361 -198984986 - MER65A-int LTR ERV1 -524 4347 3605 2645 177 109 46 chr4 3343413 3343797 -198984550 - MER65A-int LTR ERV1 -1237 5094 4736 2429 86 0 0 chr4 3343797 3344098 -198984249 + AluY SINE Alu 1 301 -10 2645 177 109 46 chr4 3344098 3344891 -198983456 - MER65A-int LTR ERV1 -1595 4736 2805 1280 138 48 45 chr4 3344874 3345165 -198983182 - MER65A-int LTR ERV1 -2577 4021 3730 * 658 125 194 44 chr4 3345245 3345405 -198982942 - MER65A-int LTR ERV1 -2868 3730 3547 1343 180 82 96 chr4 3345668 3346393 -198981954 - MER65A-int LTR ERV1 -3123 3475 1546 6164 167 61 27 chr4 3346399 3347034 -198981313 - MER65A-int LTR ERV1 -2349 2522 1910 2073 164 0 0 chr4 3347034 3347346 -198981001 + AluJo SINE Alu 1 312 0 6164 167 61 27 chr4 3347346 3349005 -198979342 - MER65A-int LTR ERV1 -2961 1910 81 2592 130 34 20 chr4 3349087 3349526 -198978821 - MER65A LTR ERV1 0 445 1 1611 343 56 16 chr4 3349526 3350612 -198977735 - HERV16 LTR ERVL -2009 2987 1851 743 287 108 34 chr4 3351090 3351564 -198976783 + L1ME3A LINE L1 2684 3192 -2954 * 1178 235 119 82 chr4 3351549 3352154 -198976193 + L1ME3A LINE L1 3598 4234 -1912 2073 164 0 0 chr4 3352154 3352459 -198975888 + AluJb SINE Alu 8 312 0 1178 235 119 82 chr4 3352459 3352560 -198975787 + L1ME3A LINE L1 4234 4330 -1816 294 211 84 21 chr4 3352570 3352665 -198975682 + L1ME3A LINE L1 4567 4667 -1479 2053 141 0 13 chr4 3352677 3352989 -198975358 - AluJb SINE Alu -4 308 1 7107 172 44 15 chr4 3352996 3355489 -198972858 - L1MB3 LINE L1 0 6183 3611 829 142 18 17 chr4 3355494 3356071 -198972276 + CT-rich Low_complexity Low_complexity 1 577 0 826 165 35 18 chr4 3356074 3356244 -198972103 - L1MB3 LINE L1 -2528 3618 3446 2293 131 0 0 chr4 3356245 3356557 -198971790 - AluSx SINE Alu 0 312 1 883 114 8 0 chr4 3356570 3356693 -198971654 - AluJb SINE Alu -187 125 2 1906 214 11 15 chr4 3356698 3357236 -198971111 - L1MB3 LINE L1 -2695 3451 2916 236 245 0 0 chr4 3357470 3357523 -198970824 + L1ME3A LINE L1 5296 5348 -826 630 301 79 18 chr4 3357587 3357866 -198970481 + L1ME3A LINE L1 5669 5964 -206 329 224 6 0 chr4 3358977 3359133 -198969214 + (TG)n Simple_repeat Simple_repeat 1 157 0 453 238 4 7 chr4 3359160 3359544 -198968803 + (TG)n Simple_repeat Simple_repeat 1 382 0 287 289 0 0 chr4 3359573 3359656 -198968691 + (TG)n Simple_repeat Simple_repeat 1 83 0 301 208 0 31 chr4 3359679 3359809 -198968538 + (TG)n Simple_repeat Simple_repeat 2 127 0 269 250 226 12 chr4 3361811 3361979 -198966368 + MER58A DNA MER1_type 1 204 -20 207 43 29 100 chr4 3361986 3362056 -198966291 + (GGGA)n Simple_repeat Simple_repeat 2 66 0 342 246 27 55 chr4 3362518 3362628 -198965719 - L2 LINE L2 -6 3266 3160 291 192 0 0 chr4 3364957 3365030 -198963317 + (TG)n Simple_repeat Simple_repeat 1 73 0 691 182 0 7 chr4 3365138 3365286 -198963061 + L1MB3 LINE L1 6036 6182 -1 235 83 0 0 chr4 3365290 3365326 -198963021 + Charlie1 DNA MER1_type 2327 2362 -399 1949 145 13 7 chr4 3365341 3365645 -198962702 + AluSx SINE Alu 3 308 -4 348 297 199 66 chr4 3365657 3366004 -198962343 + L1MEc LINE L1 1893 2285 -4111 1412 248 68 56 chr4 3366004 3366769 -198961578 + L1M4 LINE L1 4316 5089 -1057 2226 136 3 0 chr4 3366781 3367091 -198961256 - AluJb SINE Alu -1 311 1 645 112 0 84 chr4 3367093 3367236 -198961111 - AluSq/x SINE Alu -179 133 3 2413 100 0 3 chr4 3367246 3367557 -198960790 - AluSg SINE Alu 0 310 1 911 317 92 63 chr4 3367557 3367577 -198960770 - L1M4 LINE L1 -2969 3177 3159 1787 183 0 13 chr4 3367577 3367889 -198960458 - AluJb SINE Alu -4 308 1 911 317 92 63 chr4 3367889 3367932 -198960415 - L1M4 LINE L1 -2987 3159 3119 2585 59 0 3 chr4 3367932 3368236 -198960111 - AluY SINE Alu -8 303 1 911 317 92 63 chr4 3368236 3368402 -198959945 - L1M4 LINE L1 -3027 3119 2959 2335 97 0 0 chr4 3368402 3368724 -198959623 - AluSx SINE Alu 0 312 1 911 317 92 63 chr4 3368724 3368751 -198959596 - L1M4 LINE L1 -3187 2959 2934 1934 117 81 0 chr4 3368751 3369024 -198959323 + AluSx SINE Alu 1 295 -17 911 317 92 63 chr4 3369024 3369802 -198958545 - L1M4 LINE L1 -3212 2934 2110 22 0 0 0 chr4 3369879 3369901 -198958446 + AT_rich Low_complexity Low_complexity 1 22 0 2346 103 0 7 chr4 3369905 3370207 -198958140 + AluSx SINE Alu 1 300 -12 2410 78 0 3 chr4 3370211 3370505 -198957842 + AluSc SINE Alu 3 295 -14 1800 163 50 0 chr4 3372265 3372547 -198955800 + AluJb SINE Alu 1 296 -16 331 253 234 7 chr4 3373479 3373633 -198954714 + MER5A DNA MER1_type 1 189 0 2170 123 3 0 chr4 3373758 3374058 -198954289 - AluSx SINE Alu -11 301 1 2094 130 13 3 chr4 3374060 3374361 -198953986 - AluSx SINE Alu -6 306 3 303 248 101 52 chr4 3374392 3374719 -198953628 + L1MEc LINE L1 3007 3349 -2866 373 220 93 34 chr4 3374728 3374846 -198953501 + L1MC5 LINE L1 7807 7931 -30 1750 151 28 14 chr4 3374855 3375140 -198953207 + AluJb SINE Alu 3 291 -21 238 296 116 73 chr4 3375168 3375607 -198952740 + L1MEc LINE L1 3361 3818 -2397 876 114 0 0 chr4 3375610 3375724 -198952623 + AluSp/q SINE Alu 175 288 -25 337 243 57 64 chr4 3375726 3375866 -198952481 + L1MEc LINE L1 3779 3917 -2298 2285 88 20 0 chr4 3375872 3376167 -198952180 + AluSp SINE Alu 1 301 -12 303 93 0 0 chr4 3376171 3376214 -198952133 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 1691 157 3 25 chr4 3376217 3376503 -198951844 - AluJb SINE Alu -32 280 1 249 33 0 0 chr4 3376819 3376849 -198951498 + (A)n Simple_repeat Simple_repeat 1 30 0 248 83 28 0 chr4 3376855 3376891 -198951456 - MER4A LTR ERV1 -367 297 261 1218 168 5 37 chr4 3376947 3377161 -198951186 - AluJo SINE Alu -105 207 1 635 179 0 34 chr4 3378545 3378662 -198949685 - FLAM_C SINE Alu -24 119 7 593 228 152 0 chr4 3378721 3378879 -198949468 + MER21B LTR ERV1 5 186 -677 2304 121 0 0 chr4 3378928 3379225 -198949122 - AluSg SINE Alu -13 297 1 761 278 86 30 chr4 3379332 3379923 -198948424 + L1M4 LINE L1 3321 3944 -2202 1853 90 98 22 chr4 3380066 3380343 -198948004 - AluSg SINE Alu -7 303 6 2044 196 56 0 chr4 3380376 3380769 -198947578 - MER47B DNA MER2_type -2 416 2 2269 92 0 0 chr4 3381011 3381295 -198947052 - AluSc SINE Alu -21 288 5 421 282 89 81 chr4 3381545 3382238 -198946109 + L1MEd LINE L1 580 1255 -4864 317 297 19 26 chr4 3382700 3382855 -198945492 + L1MEd LINE L1 1311 1464 -4846 2514 79 0 0 chr4 3382855 3383158 -198945189 + AluY SINE Alu 1 303 -8 338 297 137 17 chr4 3383213 3383388 -198944959 - MIR SINE MIR -16 246 51 874 212 106 32 chr4 3383637 3383920 -198944427 + L1MB3 LINE L1 5879 6182 -1 2107 92 55 0 chr4 3383928 3384221 -198944126 + AluY SINE Alu 1 309 -2 2057 98 60 0 chr4 3384263 3384548 -198943799 + AluSp SINE Alu 3 304 -9 1469 205 26 10 chr4 3385685 3385987 -198942360 - AluJo SINE Alu -5 307 1 286 260 106 10 chr4 3385994 3386098 -198942249 - MIR SINE MIR -117 145 32 396 294 28 28 chr4 3386104 3386281 -198942066 + MER104 DNA MER2_type 1 177 -3 2002 118 27 0 chr4 3386937 3387233 -198941114 + AluSx SINE Alu 1 304 -8 2464 93 0 0 chr4 3387325 3387635 -198940712 - AluY SINE Alu -1 310 1 2161 123 3 3 chr4 3387664 3387957 -198940390 - AluSx SINE Alu -19 293 1 805 147 7 0 chr4 3388034 3388170 -198940177 + AluSg/x SINE Alu 176 312 0 2308 148 112 59 chr4 3388171 3388727 -198939620 - L1MD2 LINE L1 -291 6068 5484 495 0 0 0 chr4 3388767 3388822 -198939525 + (TG)n Simple_repeat Simple_repeat 2 56 0 1505 185 25 25 chr4 3388827 3389113 -198939234 - AluJo SINE Alu -26 286 1 476 267 182 15 chr4 3389162 3389439 -198938908 + L2 LINE L2 2784 3104 -209 282 304 236 20 chr4 3389684 3389832 -198938515 - MER5A DNA MER1_type 0 189 10 353 307 132 52 chr4 3390182 3390433 -198937914 + L1ME4a LINE L1 5840 6110 -11 2476 74 6 3 chr4 3390486 3390797 -198937550 + AluSp SINE Alu 1 312 -1 1203 181 78 4 chr4 3390852 3391123 -198937224 + MER58B DNA MER1_type 43 333 -8 3533 187 31 0 chr4 3391123 3391889 -198936458 + L1M4 LINE L1 4517 5306 -840 2290 126 0 0 chr4 3391944 3392245 -198936102 + AluSq SINE Alu 1 301 -12 977 273 88 33 chr4 3392415 3392911 -198935436 + L2 LINE L2 2503 3036 -277 890 171 6 47 chr4 3392912 3393082 -198935265 + FRAM SINE Alu 1 163 -13 203 191 24 0 chr4 3393087 3393129 -198935218 + L2 LINE L2 3032 3074 -239 1934 151 3 40 chr4 3393134 3393279 -198935068 + AluSx SINE Alu 1 150 -162 2381 67 0 54 chr4 3393279 3393594 -198934753 + AluY SINE Alu 1 298 -13 1934 151 3 40 chr4 3393594 3393772 -198934575 + AluSx SINE Alu 150 312 0 418 98 16 0 chr4 3393785 3393846 -198934501 + U7 snRNA snRNA 2 63 0 23 0 0 0 chr4 3393849 3393872 -198934475 + AT_rich Low_complexity Low_complexity 1 23 0 740 233 93 23 chr4 3393888 3394103 -198934244 + L2 LINE L2 3084 3313 0 21 57 0 0 chr4 3394510 3394545 -198933802 + AT_rich Low_complexity Low_complexity 1 35 0 2170 119 3 0 chr4 3394592 3394877 -198933470 + AluSg SINE Alu 1 286 -24 2233 109 0 0 chr4 3395119 3395404 -198932943 - AluSx SINE Alu -22 290 6 23 33 0 0 chr4 3395411 3395441 -198932906 + AT_rich Low_complexity Low_complexity 1 30 0 378 181 0 0 chr4 3397235 3397340 -198931007 + (CGG)n Simple_repeat Simple_repeat 2 106 0 555 16 0 0 chr4 3397342 3397406 -198930941 + (CTG)n Simple_repeat Simple_repeat 1 64 0 28 61 0 0 chr4 3397626 3397675 -198930672 + GC_rich Low_complexity Low_complexity 1 49 0 314 209 18 42 chr4 3397873 3398049 -198930298 + (CGGGG)n Simple_repeat Simple_repeat 1 171 0 452 234 6 34 chr4 3398084 3398259 -198930088 + (CGGGG)n Simple_repeat Simple_repeat 5 174 0 734 146 41 8 chr4 3399201 3399324 -198929023 + FRAM SINE Alu 28 154 -22 2152 99 20 3 chr4 3399338 3399631 -198928716 + AluSx SINE Alu 6 303 -9 1287 239 134 19 chr4 3399704 3400168 -198928179 + MLT1E LTR MaLR 8 524 -69 2115 156 51 0 chr4 3400264 3400635 -198927712 - MLT1B LTR MaLR 0 390 1 812 251 116 28 chr4 3400646 3401001 -198927346 + MLT1J LTR MaLR 17 402 -109 421 297 189 26 chr4 3453213 3453556 -198874791 + L2 LINE L2 2246 2644 -670 186 188 0 38 chr4 3454004 3454084 -198874263 + (CCCCAG)n Simple_repeat Simple_repeat 3 79 0 270 0 0 0 chr4 3454554 3454584 -198873763 + (CA)n Simple_repeat Simple_repeat 2 31 0 231 339 28 18 chr4 3454930 3455039 -198873308 + MER112 DNA MER1_type 151 260 0 694 108 0 0 chr4 3455301 3455394 -198872953 - AluJ SINE Alu -11 301 209 1337 146 5 0 chr4 3455455 3455661 -198872686 - AluJ SINE Alu -105 207 1 4074 165 93 25 chr4 3456513 3457296 -198871051 + L1MA9 LINE L1 4950 5847 -465 279 0 0 0 chr4 3457296 3457327 -198871020 + (TG)n Simple_repeat Simple_repeat 2 32 0 4074 165 93 25 chr4 3457327 3457778 -198870569 + L1MA9 LINE L1 5847 6266 -46 2520 129 27 3 chr4 3457797 3458162 -198870185 - THE1C LTR MaLR 0 375 2 10469 120 39 6 chr4 3458163 3459692 -198868655 - THE1C-int LTR MaLR 0 1580 1 2426 114 44 6 chr4 3459692 3460053 -198868294 - THE1C LTR MaLR 0 375 1 422 300 78 11 chr4 3460926 3461361 -198866986 - L1MEd LINE L1 -5031 1174 695 1503 180 25 3 chr4 3461610 3461893 -198866454 + AluJo SINE Alu 5 293 -19 2131 112 3 0 chr4 3462438 3462734 -198865613 - AluSx SINE Alu -15 297 1 213 148 0 49 chr4 3466486 3466547 -198861800 + (GGGA)n Simple_repeat Simple_repeat 1 58 0 272 289 90 19 chr4 3467536 3467692 -198860655 + L3 LINE CR1 1263 1429 -148 232 336 18 26 chr4 3468924 3469037 -198859310 + MIR SINE MIR 24 135 -73 295 273 136 9 chr4 3470130 3470240 -198858107 + L1ME3A LINE L1 6044 6167 -3 315 223 39 10 chr4 3470554 3470657 -198857690 - L1MEd LINE L1 -4936 1460 1355 552 275 61 77 chr4 3470667 3470993 -198857354 - L1MEd LINE L1 -5121 1275 958 2040 108 14 0 chr4 3470993 3471288 -198857059 + AluSx SINE Alu 1 299 -13 552 275 61 77 chr4 3471288 3471455 -198856892 - L1MEd LINE L1 -5438 958 790 616 288 106 12 chr4 3471532 3471938 -198856409 - L1MEd LINE L1 -5843 553 110 2089 139 0 0 chr4 3472446 3472749 -198855598 - AluSx SINE Alu -9 303 1 1765 280 95 30 chr4 3472944 3473173 -198855174 - L1ME3A LINE L1 -5 6165 5952 1700 139 36 53 chr4 3473173 3473294 -198855053 + AluSx SINE Alu 1 122 -190 204 111 0 0 chr4 3473294 3473330 -198855017 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1700 139 36 53 chr4 3473330 3473511 -198854836 + AluSx SINE Alu 122 298 -14 1765 280 95 30 chr4 3473511 3474128 -198854219 - L1ME3A LINE L1 -218 5952 5376 1401 192 74 62 chr4 3474128 3474467 -198853880 + MER2 DNA MER2_type 2 344 0 1765 280 95 30 chr4 3474467 3475062 -198853285 - L1ME3A LINE L1 -794 5376 4628 184 241 76 0 chr4 3475694 3475773 -198852574 - L2 LINE L2 -1202 2112 2028 862 270 64 19 chr4 3475814 3476125 -198852222 - L2 LINE L2 -839 2475 2151 637 281 130 34 chr4 3476188 3476426 -198851921 + MIR SINE MIR 2 262 0 348 264 88 83 chr4 3476540 3476623 -198851724 + L1M4 LINE L1 2173 2254 -3892 604 192 14 110 chr4 3476623 3476769 -198851578 + FLAM_A SINE Alu 2 133 0 348 264 88 83 chr4 3476769 3476901 -198851446 + L1M4 LINE L1 2254 2389 -3757 542 342 59 5 chr4 3476987 3477584 -198850763 + L1M4 LINE L1 2549 3177 -2969 797 130 73 0 chr4 3477630 3477753 -198850594 + AluJb SINE Alu 2 133 -179 640 297 100 20 chr4 3478020 3478320 -198850027 - MLT1I LTR MaLR 0 409 86 367 351 49 9 chr4 3478396 3478621 -198849726 + L1M4 LINE L1 3604 3837 -2309 265 264 0 35 chr4 3478644 3478731 -198849616 - L2 LINE L2 -3 3310 3227 234 310 0 0 chr4 3478743 3478814 -198849533 + L1M4 LINE L1 3863 3933 -2213 324 194 6 56 chr4 3478878 3479038 -198849309 + (TTA)n Simple_repeat Simple_repeat 1 152 0 488 275 85 68 chr4 3479107 3479343 -198849004 + L1M4 LINE L1 4010 4249 -1897 25 0 0 0 chr4 3480486 3480511 -198847836 + AT_rich Low_complexity Low_complexity 1 25 0 242 333 72 9 chr4 3481735 3481846 -198846501 + MIR3 SINE MIR 43 160 -48 704 245 107 28 chr4 3482226 3482479 -198845868 + MER115 DNA AcHobo 410 682 -11 1600 276 122 21 chr4 3482735 3483366 -198844981 + L1MC4 LINE L1 6383 7077 -965 1154 241 148 66 chr4 3483427 3484196 -198844151 + L1MC4 LINE L1 7129 8042 0 259 313 55 8 chr4 3484752 3484880 -198843467 + MER58A DNA MER1_type 3 136 0 858 144 81 58 chr4 3488471 3488645 -198839702 - AluJo SINE Alu -85 227 50 240 318 87 8 chr4 3489334 3489460 -198838887 - L1P LINE L1 -1055 5091 4956 239 247 49 12 chr4 3492160 3492241 -198836106 + L2 LINE L2 3227 3310 -3 300 205 64 26 chr4 3496057 3496135 -198832212 - L1ME4a LINE L1 -6 6115 6035 1453 127 51 82 chr4 3497106 3497256 -198831091 + AluSx SINE Alu 1 154 -156 2284 97 0 0 chr4 3497256 3497554 -198830793 + AluSx SINE Alu 1 298 -14 1453 127 51 82 chr4 3497554 3497722 -198830625 + AluSx SINE Alu 154 310 0 1528 148 9 50 chr4 3497741 3498059 -198830288 + AluJo SINE Alu 6 310 -2 200 132 57 132 chr4 3498072 3498125 -198830222 - MER5B DNA MER1_type -71 107 59 193 313 45 0 chr4 3498543 3498610 -198829737 - L2 LINE L2 -19 3253 3184 456 254 56 8 chr4 3499959 3500085 -198828262 - MLT1H LTR MaLR -416 133 2 215 324 34 34 chr4 3502672 3502820 -198825527 + MIR SINE MIR 35 182 -80 323 280 0 50 chr4 3503993 3504175 -198824172 + G-rich Low_complexity Low_complexity 3 175 0 272 255 0 81 chr4 3504195 3504356 -198823991 + G-rich Low_complexity Low_complexity 2 149 0 224 238 20 75 chr4 3504672 3504819 -198823528 + G-rich Low_complexity Low_complexity 3 141 0 2338 101 0 0 chr4 3505912 3506219 -198822128 + AluSx SINE Alu 6 312 0 288 263 11 65 chr4 3511895 3512081 -198816266 + (CACCC)n Simple_repeat Simple_repeat 5 180 0 1900 136 85 25 chr4 3512489 3512843 -198815504 - THE1C LTR MaLR 0 375 1 185 229 306 19 chr4 3518592 3518749 -198809598 - L2 LINE L2 -245 3068 2867 212 305 11 0 chr4 3519087 3519182 -198809165 + C-rich Low_complexity Low_complexity 5 100 0 212 116 93 0 chr4 3520072 3520115 -198808232 - L2 LINE L2 -223 3049 3003 211 308 62 0 chr4 3523802 3523867 -198804480 - MIR SINE MIR -67 141 73 197 132 79 0 chr4 3524215 3524253 -198804094 - MIR SINE MIR -62 146 106 347 280 34 25 chr4 3527068 3527186 -198801161 - MIR SINE MIR -83 179 61 222 37 0 0 chr4 3529113 3529140 -198799207 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 2220 122 0 0 chr4 3529142 3529591 -198798756 - AluSx SINE Alu 0 450 2 1493 150 108 0 chr4 3529899 3530159 -198798188 + AluJb SINE Alu 1 288 -24 1534 192 3 79 chr4 3530165 3530319 -198798028 + MLT1B LTR MaLR 29 193 -197 3297 166 92 7 chr4 3530319 3530904 -198797443 - LTR24C LTR ERV1 0 635 1 1534 192 3 79 chr4 3530904 3531140 -198797207 + MLT1B LTR MaLR 193 389 -1 499 281 91 40 chr4 3531434 3531764 -198796583 - L1M4 LINE L1 -2399 3747 3394 2125 127 0 0 chr4 3531764 3532056 -198796291 + AluSg SINE Alu 3 294 -16 499 281 91 40 chr4 3532056 3532099 -198796248 - L1M4 LINE L1 -2752 3394 3355 678 155 0 49 chr4 3532104 3532246 -198796101 + MLT2A2 LTR ERVL 1 135 -318 3160 102 14 7 chr4 3532258 3532699 -198795648 + MLT2A1 LTR ERVL 1 444 0 26808 56 4 8 chr4 3532699 3534564 -198793783 + HERVL-A1 LTR ERVL 1 1845 -3809 2448 81 0 0 chr4 3534564 3534874 -198793473 - AluY SINE Alu -1 310 1 26808 56 4 8 chr4 3534874 3536640 -198791707 + HERVL-A1 LTR ERVL 1845 3617 -2037 2694 122 21 0 chr4 3536648 3537076 -198791271 - LTR3b LTR ERVK 0 437 1 11946 67 4 4 chr4 3537076 3538729 -198789618 + HERVL LTR ERVL 3610 5263 -391 1453 105 16 47 chr4 3538729 3538987 -198789360 - THE1B LTR MaLR -114 250 1 225 316 25 0 chr4 3538994 3539073 -198789274 - MLT1J2 LTR MaLR -278 172 92 42 20 0 0 chr4 3541776 3541825 -198786522 + GC_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr4 3541900 3541932 -198786415 + GC_rich Low_complexity Low_complexity 1 32 0 320 337 0 29 chr4 3545875 3546015 -198782332 + (TG)n Simple_repeat Simple_repeat 1 137 -30 1116 206 87 59 chr4 3546015 3546370 -198781977 - MLT1A1 LTR MaLR 0 365 1 320 337 0 29 chr4 3546370 3546401 -198781946 + (TG)n Simple_repeat Simple_repeat 137 167 0 663 246 3 0 chr4 3546436 3547582 -198780765 + (TG)n Simple_repeat Simple_repeat 1 1149 0 379 261 161 33 chr4 3548323 3548722 -198779625 - MLT1C LTR MaLR -4 463 18 569 270 133 0 chr4 3548980 3549176 -198779171 + MER58A DNA MER1_type 1 222 -2 357 273 209 5 chr4 3549544 3549731 -198778616 - MIR SINE MIR -3 259 35 502 297 16 16 chr4 3550279 3550464 -198777883 + MER58A DNA MER1_type 40 224 0 24 0 0 0 chr4 3551991 3552015 -198776332 + GC_rich Low_complexity Low_complexity 1 24 0 199 77 26 26 chr4 3552378 3552417 -198775930 + (GGGA)n Simple_repeat Simple_repeat 1 39 0 888 122 0 36 chr4 3552744 3552883 -198775464 + AluJb SINE Alu 1 134 -178 2122 122 0 0 chr4 3552886 3553180 -198775167 + AluSx SINE Alu 1 294 -18 643 163 0 0 chr4 3553181 3553279 -198775068 + AluSg/x SINE Alu 206 303 -9 315 187 66 0 chr4 3553280 3553371 -198774976 + MER96B DNA MER1_type? 259 355 -62 255 251 0 73 chr4 3554507 3554686 -198773661 + (CCCG)n Simple_repeat Simple_repeat 4 169 0 277 335 78 48 chr4 3557364 3557594 -198770753 - MLT1C LTR MaLR -1 466 230 193 248 69 59 chr4 3558450 3558551 -198769796 - L2 LINE L2 -179 3093 2992 2068 143 0 0 chr4 3558696 3559004 -198769343 + AluSx SINE Alu 1 308 -4 296 239 0 65 chr4 3560611 3560711 -198767636 - MLT1H LTR MaLR -80 508 383 333 282 150 0 chr4 3560754 3560967 -198767380 - MLT1H LTR MaLR -229 320 76 253 311 104 0 chr4 3562303 3562409 -198765938 + MIR SINE MIR 32 147 -63 210 261 29 14 chr4 3565692 3565761 -198762586 - MIR3 SINE MIR -27 181 112 212 204 13 40 chr4 3568232 3568384 -198759963 + CT-rich Low_complexity Low_complexity 1 148 0 423 262 16 33 chr4 3568425 3568608 -198759739 + CT-rich Low_complexity Low_complexity 1 180 0 242 425 0 6 chr4 3568607 3568788 -198759559 + C-rich Low_complexity Low_complexity 1 180 0 * 444 287 29 0 chr4 3568688 3568862 -198759485 + CT-rich Low_complexity Low_complexity 2 180 0 244 215 11 43 chr4 3568897 3569083 -198759264 + CT-rich Low_complexity Low_complexity 1 180 0 233 193 12 56 chr4 3569125 3569286 -198759061 + CT-rich Low_complexity Low_complexity 3 156 0 256 183 12 55 chr4 3569353 3569517 -198758830 + CT-rich Low_complexity Low_complexity 4 160 0 421 298 9 31 chr4 3569542 3569773 -198758574 + CT-rich Low_complexity Low_complexity 1 225 0 197 216 78 0 chr4 3572234 3572285 -198756062 - MIR SINE MIR -113 149 95 205 322 0 11 chr4 3573101 3573188 -198755159 + (CCTG)n Simple_repeat Simple_repeat 3 88 0 338 330 128 5 chr4 3573227 3573430 -198754917 + MIR SINE MIR 2 229 -33 453 195 0 23 chr4 3581668 3581755 -198746592 - AluJ/FLAM SINE Alu -227 85 1 528 265 6 6 chr4 3581774 3581936 -198746411 + L1M4 LINE L1 2874 3035 -3111 314 302 109 73 chr4 3581951 3582309 -198746038 + L1ME3 LINE L1 3 373 -5746 1952 125 0 72 chr4 3582526 3582662 -198745685 + AluSx SINE Alu 1 145 -167 2171 113 16 7 chr4 3582662 3582972 -198745375 + AluSq SINE Alu 1 313 0 1952 125 0 72 chr4 3582972 3583170 -198745177 + AluSx SINE Alu 145 311 -1 1875 136 0 11 chr4 3584264 3584550 -198743797 - AluSx SINE Alu -19 293 11 2269 81 7 0 chr4 3584570 3584866 -198743481 - AluSq SINE Alu -15 298 1 388 271 95 29 chr4 3584964 3585126 -198743221 + L1ME2 LINE L1 5121 5271 -924 1587 167 13 36 chr4 3585126 3585431 -198742916 + AluJo SINE Alu 1 298 -14 388 271 95 29 chr4 3585431 3585568 -198742779 + L1ME2 LINE L1 5271 5442 -753 386 284 28 124 chr4 3585586 3585804 -198742543 - L1M4 LINE L1 -3305 2841 2645 1094 317 108 25 chr4 3585829 3586208 -198742139 + L1ME3 LINE L1 3032 3378 -2751 2211 113 0 0 chr4 3586208 3586501 -198741846 - AluSx SINE Alu -19 293 1 1094 317 108 25 chr4 3586501 3586975 -198741372 + L1ME3 LINE L1 3378 3956 -2173 272 275 94 7 chr4 3587247 3587385 -198740962 + L1ME3 LINE L1 4342 4491 -1638 645 243 121 32 chr4 3588141 3588334 -198740013 + L1ME3 LINE L1 4565 4798 -1331 1532 148 10 79 chr4 3588334 3588639 -198739708 + AluJb SINE Alu 1 284 -28 645 243 121 32 chr4 3588639 3588758 -198739589 + L1ME3 LINE L1 4798 4905 -1224 331 275 89 108 chr4 3588792 3589061 -198739286 + L1ME3 LINE L1 5712 5975 -170 385 272 33 65 chr4 3589440 3589624 -198738723 + L1ME2 LINE L1 5689 5866 -296 1889 151 7 3 chr4 3591448 3591746 -198736601 - AluSx SINE Alu -13 299 1 216 347 51 0 chr4 3595453 3595551 -198732796 + L2 LINE L2 3205 3307 -6 258 237 0 0 chr4 3596901 3596960 -198731387 + G-rich Low_complexity Low_complexity 1 59 0 740 139 17 0 chr4 3599935 3600078 -198728269 + FLAM_C SINE Alu 1 145 0 195 129 0 0 chr4 3600850 3600881 -198727466 + (CAGAG)n Simple_repeat Simple_repeat 1 31 0 245 306 93 28 chr4 3601562 3601670 -198726677 + MIR3 SINE MIR 7 121 -87 218 279 25 25 chr4 3602323 3602402 -198725945 - L3 LINE CR1 -96 1481 1403 499 186 224 13 chr4 3602751 3602907 -198725440 + MER46A DNA MER2_type 48 236 0 2236 81 0 7 chr4 3607064 3607360 -198720987 + AluSx SINE Alu 19 312 0 218 247 106 12 chr4 3609351 3609436 -198718911 - MIR3 SINE MIR -3 205 113 222 317 49 0 chr4 3609573 3609655 -198718692 + MIR3 SINE MIR 77 162 -46 202 246 31 15 chr4 3609848 3609913 -198718434 + MIR3 SINE MIR 11 76 -132 209 169 0 78 chr4 3610103 3610180 -198718167 + C-rich Low_complexity Low_complexity 3 73 0 1742 127 20 31 chr4 3611361 3611653 -198716694 - AluJo SINE Alu -18 294 6 449 206 40 16 chr4 3611732 3611858 -198716489 - L1MEc LINE L1 -6231 165 37 325 333 77 27 chr4 3612493 3612676 -198715671 + L1ME2 LINE L1 5970 6161 -3 516 205 169 62 chr4 3614078 3614385 -198713962 - LTR16A1 LTR ERVL 0 457 118 499 240 187 18 chr4 3614536 3614761 -198713586 + L2 LINE L2 59 321 -2993 372 56 42 42 chr4 3614761 3614832 -198713515 + MER4B LTR ERV1 1 71 -539 446 194 20 0 chr4 3615034 3615132 -198713215 - LTR49-int LTR ERV1 -2884 3447 3348 309 200 0 0 chr4 3615193 3615253 -198713094 - LTR49-int LTR ERV1 -2997 3334 3275 460 134 49 120 chr4 3615313 3615390 -198712957 - LTR49-int LTR ERV1 -3059 3272 3208 2093 132 3 19 chr4 3615390 3615708 -198712639 + AluSq SINE Alu 1 313 0 460 134 49 120 chr4 3615708 3615772 -198712575 - LTR49-int LTR ERV1 -3123 3208 3141 6789 62 16 23 chr4 3615805 3616749 -198711598 - SVA Other Other 0 1386 450 6445 56 9 14 chr4 3616780 3617753 -198710594 - SVA Other Other -520 866 1 315 32 143 0 chr4 3617753 3617816 -198710531 + GA-rich Low_complexity Low_complexity 2 73 0 2322 130 33 41 chr4 3617827 3618376 -198709971 + MER4E LTR ERV1 51 766 0 509 274 83 34 chr4 3618445 3618649 -198709698 + L2 LINE L2 651 864 -2450 1295 51 93 0 chr4 3618653 3618868 -198709479 + LTR19A LTR ERV1 7 241 -245 238 237 126 47 chr4 3618890 3619080 -198709267 + L2 LINE L2 860 1064 -2250 225 307 93 13 chr4 3619056 3619206 -198709141 - L3 LINE CR1 -315 1262 1101 * 248 283 160 19 chr4 3619197 3619303 -198709044 + L2 LINE L2 3180 3300 -13 556 167 53 0 chr4 3619318 3619468 -198708879 + (TGGA)n Simple_repeat Simple_repeat 4 161 0 775 150 24 22 chr4 3619498 3620006 -198708341 + (TGGA)n Simple_repeat Simple_repeat 1 509 0 641 182 20 20 chr4 3620025 3620280 -198708067 + (TGGA)n Simple_repeat Simple_repeat 1 255 0 722 153 28 17 chr4 3620309 3620485 -198707862 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 570 217 23 0 chr4 3620505 3620680 -198707667 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 861 146 14 17 chr4 3620709 3621064 -198707283 + (TGGA)n Simple_repeat Simple_repeat 1 353 0 1455 210 10 10 chr4 3621854 3622164 -198706183 + AluJo SINE Alu 1 310 -2 308 299 46 0 chr4 3622562 3622649 -198705698 - MIR SINE MIR -92 170 80 353 330 27 27 chr4 3623682 3623867 -198704480 + L2 LINE L2 3111 3295 -18 724 148 0 0 chr4 3623867 3623982 -198704365 - AluSx SINE Alu -4 308 194 1107 86 0 0 chr4 3623985 3624124 -198704223 - AluSx SINE Alu -174 139 1 752 178 0 30 chr4 3624168 3624303 -198704044 + FLAM_C SINE Alu 3 133 0 380 249 35 56 chr4 3624332 3624529 -198703818 - L1M4 LINE L1 -1492 4654 4462 875 349 69 4 chr4 3624544 3625066 -198703281 - L1M4 LINE L1 -1723 4423 3868 591 258 97 24 chr4 3625312 3625642 -198702705 + MER74B LTR ERVL 213 566 -56 1608 247 119 17 chr4 3625791 3625958 -198702389 + MER69B DNA AcHobo 520 668 -1858 1579 170 53 3 chr4 3625958 3626241 -198702106 - AluJb SINE Alu -15 297 1 1608 247 119 17 chr4 3626241 3626676 -198701671 + MER69B DNA AcHobo 668 1184 -42 217 255 61 0 chr4 3627395 3627479 -198700868 - MIR SINE MIR -60 148 104 203 362 61 43 chr4 3627900 3628063 -198700284 - MIR SINE MIR -81 181 16 346 226 24 0 chr4 3628166 3628250 -198700097 + MIR SINE MIR 77 162 -100 2071 123 6 22 chr4 3628275 3628593 -198699754 + AluSq SINE Alu 1 313 0 817 200 0 24 chr4 3628619 3628784 -198699563 + FAM SINE Alu 1 44 -5 647 178 58 66 chr4 3630096 3630377 -198697970 + MSTD LTR MaLR 2 327 -67 2179 122 0 0 chr4 3630377 3630688 -198697659 - AluSx SINE Alu -1 311 1 647 178 58 66 chr4 3630688 3630707 -198697640 + MSTD LTR MaLR 327 345 -49 540 257 14 7 chr4 3630690 3630838 -198697509 - MLT1C LTR MaLR -285 182 34 * 1848 114 0 29 chr4 3630847 3631119 -198697228 - AluSx SINE Alu -14 298 35 589 251 6 16 chr4 3631169 3631352 -198696995 - HAL1b LINE L1 -882 466 286 353 165 252 68 chr4 3631450 3631553 -198696794 + FLAM_A SINE Alu 3 124 -9 2259 95 7 0 chr4 3631622 3631927 -198696420 - AluSg SINE Alu -3 307 1 1169 195 0 56 chr4 3632321 3632500 -198695847 - AluJo SINE Alu -6 306 149 1664 153 29 52 chr4 3632500 3632808 -198695539 - AluJb SINE Alu -11 301 1 1169 195 0 56 chr4 3632808 3632930 -198695417 - AluJo SINE Alu -163 149 22 2475 103 4 9 chr4 3632937 3633432 -198694915 - MER41B LTR ERV1 -12 542 1 225 61 0 0 chr4 3633433 3633466 -198694881 - AluJo SINE Alu -266 33 1 318 276 264 23 chr4 3633702 3633876 -198694471 + L1ME2 LINE L1 5912 6127 -37 351 127 48 0 chr4 3633882 3633945 -198694402 + MLT1J LTR MaLR 6 71 -396 954 281 16 79 chr4 3634529 3635021 -198693326 + MLT1J LTR MaLR 37 497 -14 622 224 14 7 chr4 3635120 3635263 -198693084 + MER83C LTR ERV1 49 192 -181 238 226 32 0 chr4 3635321 3635383 -198692964 + MER83B LTR ERV1 134 197 -181 820 247 94 0 chr4 3635772 3635995 -198692352 + MER83C LTR ERV1 130 373 0 399 205 0 12 chr4 3636041 3636124 -198692223 - MIR SINE MIR -101 161 80 693 193 0 0 chr4 3638373 3638523 -198689824 + (TCCA)n Simple_repeat Simple_repeat 3 152 0 778 176 4 11 chr4 3638540 3638821 -198689526 + (TCCA)n Simple_repeat Simple_repeat 1 278 0 194 240 0 20 chr4 3638868 3638918 -198689429 - L2 LINE L2 -56 3216 3168 398 222 16 29 chr4 3639119 3639142 -198689205 - ORSL DNA AcHobo 0 275 253 3892 118 11 33 chr4 3639142 3639279 -198689068 - MER4A LTR ERV1 0 600 462 2146 115 0 3 chr4 3639279 3639583 -198688764 - AluSg1 SINE Alu 0 309 7 3892 118 11 33 chr4 3639583 3640058 -198688289 - MER4A LTR ERV1 -138 462 1 398 222 16 29 chr4 3640058 3640235 -198688112 - ORSL DNA AcHobo -22 253 41 3521 163 18 74 chr4 3640728 3641460 -198686887 + LTR8 LTR ERV1 1 691 0 1044 298 73 5 chr4 3643644 3644070 -198684277 + L1MC/D LINE L1 5296 5750 -2058 230 137 41 14 chr4 3644261 3644334 -198684013 + (CA)n Simple_repeat Simple_repeat 2 76 0 331 310 18 0 chr4 3646230 3646343 -198682004 - L1MC4 LINE L1 -7 8035 7921 1906 208 50 2 chr4 3646487 3646968 -198681379 - L1 LINE L1 -2178 3968 3465 721 128 29 87 chr4 3646968 3647140 -198681207 - MSTC LTR MaLR -242 186 25 1669 212 13 18 chr4 3647242 3647624 -198680723 + LTR8 LTR ERV1 312 691 0 1026 301 73 5 chr4 3650432 3650858 -198677489 + L1MC4a LINE L1 5296 5750 -2058 449 144 48 12 chr4 3651049 3651216 -198677131 + (CA)n Simple_repeat Simple_repeat 2 174 0 364 160 38 28 chr4 3651245 3651540 -198676807 + (CA)n Simple_repeat Simple_repeat 1 298 0 380 197 15 47 chr4 3651551 3651834 -198676513 + (CA)n Simple_repeat Simple_repeat 1 273 0 375 140 28 39 chr4 3651863 3652042 -198676305 + (CA)n Simple_repeat Simple_repeat 2 178 0 198 94 19 38 chr4 3652064 3652117 -198676230 + (CA)n Simple_repeat Simple_repeat 1 52 0 350 164 29 29 chr4 3652159 3652330 -198676017 + (CA)n Simple_repeat Simple_repeat 2 172 0 238 175 23 41 chr4 3652406 3652577 -198675770 + (CA)n Simple_repeat Simple_repeat 1 168 0 291 154 21 42 chr4 3652655 3652798 -198675549 + (CA)n Simple_repeat Simple_repeat 1 140 0 342 177 15 48 chr4 3652834 3653385 -198674962 + (CA)n Simple_repeat Simple_repeat 1 532 0 202 192 12 52 chr4 3653405 3653577 -198674770 + (CA)n Simple_repeat Simple_repeat 2 166 0 449 346 181 25 chr4 3653667 3654198 -198674149 + L1MC4a LINE L1 6067 6680 -1128 255 291 24 31 chr4 3654258 3654385 -198673962 + L1MC4 LINE L1 6862 6987 -1055 1027 220 65 17 chr4 3654555 3654983 -198673364 + MLT1D LTR MaLR 1 501 -4 601 346 146 14 chr4 3654986 3655474 -198672873 + L1MC4 LINE L1 7219 7770 -272 1728 152 14 0 chr4 3655703 3655993 -198672354 - AluJb SINE Alu -18 294 1 229 287 15 59 chr4 3657022 3657158 -198671189 - MLT1H LTR MaLR -404 145 16 259 209 15 15 chr4 3657550 3657617 -198670730 + LTR16B LTR ERVL 394 460 -4 294 363 0 0 chr4 3657651 3657830 -198670517 + G-rich Low_complexity Low_complexity 1 179 0 195 207 12 73 chr4 3657844 3657926 -198670421 - L2 LINE L2 -214 3099 3023 1145 165 53 102 chr4 3657931 3658092 -198670255 + L1PA15 LINE L1 5860 5999 -166 2166 108 0 16 chr4 3658092 3658406 -198669941 + AluSg1 SINE Alu 1 309 0 1145 165 53 102 chr4 3658406 3658566 -198669781 + L1PA15 LINE L1 5999 6165 0 448 158 21 0 chr4 3660360 3660455 -198667892 + GA-rich Low_complexity Low_complexity 1 97 0 220 310 42 0 chr4 3660489 3660560 -198667787 + MIR3 SINE MIR 114 187 -21 210 158 0 0 chr4 3661963 3662001 -198666346 + (TAA)n Simple_repeat Simple_repeat 3 40 0 623 244 5 5 chr4 3662008 3662388 -198665959 + (TCCA)n Simple_repeat Simple_repeat 1 380 0 840 158 11 6 chr4 3662410 3662587 -198665760 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 321 355 24 6 chr4 3662794 3662963 -198665384 + (CCCA)n Simple_repeat Simple_repeat 3 174 0 631 127 17 0 chr4 3662972 3663090 -198665257 + (TCCA)n Simple_repeat Simple_repeat 1 120 0 978 130 20 23 chr4 3664269 3664709 -198663638 + (TCCA)n Simple_repeat Simple_repeat 3 616 0 319 282 24 0 chr4 3664935 3665020 -198663327 + MIR SINE MIR 8 94 -168 347 273 93 12 chr4 3666745 3666906 -198661441 - L1ME3A LINE L1 -219 6020 5847 414 209 133 0 chr4 3667008 3667113 -198661234 - L1ME3A LINE L1 -559 5672 5554 548 143 51 41 chr4 3667124 3667222 -198661125 - FLAM_A SINE Alu -7 135 37 701 299 74 52 chr4 3667240 3668025 -198660322 - L1ME3A LINE L1 -707 5532 4732 342 254 0 0 chr4 3668129 3668239 -198660108 + (CA)n Simple_repeat Simple_repeat 2 111 0 471 180 17 133 chr4 3668241 3668474 -198659873 - L1ME3A LINE L1 -1533 4682 4477 1458 214 52 28 chr4 3668503 3668843 -198659504 + MLT2D LTR ERVL 1 352 -62 2294 77 0 0 chr4 3668843 3669128 -198659219 + AluSg SINE Alu 10 294 -16 1458 214 52 28 chr4 3669128 3669151 -198659196 + MLT2D LTR ERVL 352 373 -41 226 302 0 16 chr4 3669152 3669215 -198659132 + (CA)n Simple_repeat Simple_repeat 2 63 0 330 104 0 0 chr4 3669215 3669263 -198659084 + MLT2D LTR ERVL 367 414 0 2025 141 3 3 chr4 3669266 3669571 -198658776 - AluSx SINE Alu -7 305 1 233 314 66 7 chr4 3669597 3669734 -198658613 - L1ME3A LINE L1 -1777 4438 4294 465 340 49 21 chr4 3669750 3670058 -198658289 - L1MEc LINE L1 -4931 1274 987 1927 117 0 0 chr4 3670107 3670373 -198657974 - AluSx SINE Alu -17 295 30 185 169 123 46 chr4 3671121 3671186 -198657161 - L2 LINE L2 -2807 507 438 392 127 0 13 chr4 3673171 3673250 -198655097 + (CA)n Simple_repeat Simple_repeat 1 78 0 352 317 0 65 chr4 3673271 3673394 -198654953 - L1MCa LINE L1 -3971 2970 2856 1530 177 5 124 chr4 3673565 3673960 -198654387 - Tigger3(Golem) DNA MER2_type 0 3029 1 207 218 0 0 chr4 3673971 3674026 -198654321 + (CA)n Simple_repeat Simple_repeat 2 56 0 572 254 19 17 chr4 3674035 3674250 -198654097 - L1MC/D LINE L1 -577 6388 6187 309 325 67 39 chr4 3675021 3675637 -198652710 - L1MC4 LINE L1 0 8042 7315 938 257 70 43 chr4 3675715 3675861 -198652486 - L1MCa LINE L1 -4197 2925 2784 684 67 0 0 chr4 3675861 3675951 -198652396 + (TA)n Simple_repeat Simple_repeat 1 90 0 2300 86 0 0 chr4 3675958 3676249 -198652098 - AluY SINE Alu -20 291 1 938 257 70 43 chr4 3676249 3677015 -198651332 - L1MCa LINE L1 -4343 2779 1729 494 295 52 41 chr4 3677293 3677659 -198650688 - L1MCa LINE L1 -6003 420 51 427 319 47 0 chr4 3677686 3677921 -198650426 - L1ME LINE L1 -4755 1641 1396 824 139 16 4 chr4 3677921 3678439 -198649908 + (TG)n Simple_repeat Simple_repeat 1 524 0 828 249 53 84 chr4 3678475 3678489 -198649858 - L1ME LINE L1 -4917 1298 1285 2221 118 0 0 chr4 3678489 3678793 -198649554 - AluSx SINE Alu -7 305 2 828 249 53 84 chr4 3678793 3679344 -198649003 - L1ME LINE L1 -4930 1285 761 342 0 0 0 chr4 3679344 3679382 -198648965 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 828 249 53 84 chr4 3679382 3679414 -198648933 - L1ME LINE L1 -5454 761 730 510 310 75 29 chr4 3679581 3679929 -198648418 - L1ME LINE L1 -5837 559 196 463 346 67 38 chr4 3680072 3680725 -198647622 - L1MC4a LINE L1 -1883 5925 5254 429 306 52 8 chr4 3680967 3680989 -198647358 - L1MC4a LINE L1 -1087 5059 5039 809 113 38 38 chr4 3680989 3681122 -198647225 - FLAM_C SINE Alu 0 133 1 429 306 52 8 chr4 3681122 3681233 -198647114 - L1MC4a LINE L1 -1107 5039 4920 454 245 71 0 chr4 3681288 3681443 -198646904 + MER92B LTR ERV1 74 239 -397 528 256 8 0 chr4 3682167 3682300 -198646047 - MLT1C LTR MaLR -14 453 320 398 388 0 0 chr4 3682770 3682948 -198645399 + (TG)n Simple_repeat Simple_repeat 1 178 0 547 350 0 0 chr4 3682980 3683343 -198645004 + (TG)n Simple_repeat Simple_repeat 1 363 0 508 343 0 8 chr4 3683370 3683869 -198644478 + (TG)n Simple_repeat Simple_repeat 1 495 0 198 319 0 0 chr4 3683891 3684035 -198644312 + (TG)n Simple_repeat Simple_repeat 1 144 0 499 282 0 39 chr4 3684053 3684234 -198644113 + (TG)n Simple_repeat Simple_repeat 1 174 0 2141 102 0 0 chr4 3684926 3685210 -198643137 - AluSx SINE Alu -20 292 9 322 263 150 0 chr4 3685872 3686005 -198642342 - L2 LINE L2 -511 2803 2651 298 151 0 129 chr4 3687854 3687947 -198640400 - L2 LINE L2 -189 3083 3003 200 297 54 27 chr4 3688006 3688117 -198640230 + MIR SINE MIR 7 120 -142 267 287 130 0 chr4 3688266 3688374 -198639973 - MIR SINE MIR -61 201 80 402 74 0 0 chr4 3688598 3688652 -198639695 + (TTCA)n Simple_repeat Simple_repeat 4 57 0 190 345 95 9 chr4 3688836 3688952 -198639395 - MER5A DNA MER1_type -49 140 15 205 345 129 0 chr4 3689542 3689681 -198638666 + MIR SINE MIR 104 260 -2 513 121 0 0 chr4 3690452 3690535 -198637812 + (TGAG)n Simple_repeat Simple_repeat 1 83 0 1056 163 0 14 chr4 3690548 3691088 -198637259 + (TGAG)n Simple_repeat Simple_repeat 1 357 0 427 301 106 34 chr4 3691300 3691536 -198636811 + MIR SINE MIR 10 262 0 280 263 113 42 chr4 3691624 3691837 -198636510 + L2 LINE L2 2838 3065 -248 267 305 76 29 chr4 3692729 3692834 -198635513 + L2 LINE L2 3159 3268 -4 548 253 57 26 chr4 3693287 3693481 -198634866 - MER63A DNA MER1_type -10 200 1 329 313 12 6 chr4 3693547 3693710 -198634637 + (CA)n Simple_repeat Simple_repeat 1 164 0 681 142 35 0 chr4 3694072 3694241 -198634106 + (TCCA)n Simple_repeat Simple_repeat 4 178 0 724 144 28 31 chr4 3694291 3694648 -198633699 + (TCCA)n Simple_repeat Simple_repeat 1 355 0 843 94 53 0 chr4 3694664 3694835 -198633512 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 853 100 47 0 chr4 3694872 3695042 -198633305 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 874 138 44 3 chr4 3695059 3695409 -198632938 + (TCCA)n Simple_repeat Simple_repeat 1 364 0 253 116 87 0 chr4 3695513 3695582 -198632765 + (TG)n Simple_repeat Simple_repeat 2 76 0 417 144 46 61 chr4 3697162 3697600 -198630747 + (CA)n Simple_repeat Simple_repeat 1 431 0 377 183 30 55 chr4 3697612 3697776 -198630571 + (CA)n Simple_repeat Simple_repeat 1 160 0 202 143 26 65 chr4 3697799 3697953 -198630394 + (CA)n Simple_repeat Simple_repeat 2 149 0 495 108 21 59 chr4 3697975 3698161 -198630186 + (CA)n Simple_repeat Simple_repeat 2 180 0 318 313 142 4 chr4 3698531 3698764 -198629583 + MLT1H LTR MaLR 1 265 -284 2220 128 42 28 chr4 3699172 3699530 -198628817 - THE1B LTR MaLR 0 364 2 1396 219 42 0 chr4 3699758 3700091 -198628256 - MLT1B LTR MaLR -31 359 13 542 342 43 40 chr4 3700839 3701190 -198627157 - L1M4c LINE L1 -3618 2528 2177 404 166 14 48 chr4 3701245 3701390 -198626957 + CT-rich Low_complexity Low_complexity 4 143 0 643 115 0 73 chr4 3701392 3701584 -198626763 + (TCCC)n Simple_repeat Simple_repeat 2 179 0 603 156 15 46 chr4 3701596 3701945 -198626402 + CT-rich Low_complexity Low_complexity 1 337 0 1465 187 13 13 chr4 3701947 3702257 -198626090 + LOR1a LTR ERV1 188 497 0 396 341 105 73 chr4 3702271 3702820 -198625527 - L1M4c LINE L1 -345 1231 701 2692 118 3 0 chr4 3702820 3703194 -198625153 - THE1C LTR MaLR 0 375 1 396 341 105 73 chr4 3703194 3703684 -198624663 - L1M4c LINE L1 -875 701 20 422 267 9 0 chr4 3703913 3704029 -198624318 - MLT1A2 LTR MaLR 0 374 258 829 236 13 81 chr4 3704033 3704342 -198624005 - MLT1A2 LTR MaLR -83 291 4 3897 101 45 62 chr4 3704419 3705064 -198623283 - MER51A LTR ERV1 0 634 1 600 151 0 92 chr4 3705442 3705486 -198622861 + MLT1C LTR MaLR 1 47 -420 1449 147 140 29 chr4 3705486 3705758 -198622589 + AluJo SINE Alu 1 302 0 600 151 0 92 chr4 3705758 3705865 -198622482 + MLT1C LTR MaLR 47 138 -329 988 276 100 22 chr4 3705865 3706248 -198622099 - L1ME LINE L1 -588 5578 5226 1620 168 0 11 chr4 3706248 3706534 -198621813 - AluJb SINE Alu 0 312 30 988 276 100 22 chr4 3706534 3706897 -198621450 - L1ME LINE L1 -940 5226 4755 381 297 182 0 chr4 3707011 3707176 -198621171 + MIR SINE MIR 65 259 -3 434 286 86 0 chr4 3707177 3707317 -198621030 + MIR SINE MIR 5 156 -106 28 0 0 0 chr4 3707693 3707721 -198620626 + AT_rich Low_complexity Low_complexity 1 28 0 295 262 0 78 chr4 3708600 3708841 -198619506 + G-rich Low_complexity Low_complexity 1 222 0 283 402 16 16 chr4 3710027 3710211 -198618136 - MIR SINE MIR -56 206 23 598 298 174 11 chr4 3710804 3711160 -198617187 + L2 LINE L2 2900 3313 0 395 302 11 22 chr4 3711244 3711423 -198616924 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 245 292 18 48 chr4 3711645 3711813 -198616534 + (TGGG)n Simple_repeat Simple_repeat 2 164 0 2217 219 50 9 chr4 3712966 3713545 -198614802 + LTR26 LTR ERV1 1 603 0 248 290 30 40 chr4 3713674 3713774 -198614573 - MIR SINE MIR -56 206 108 183 208 19 57 chr4 3713919 3713972 -198614375 - MIR3 SINE MIR -46 162 112 191 250 0 54 chr4 3714796 3714852 -198613495 + L2 LINE L2 2992 3044 -228 981 248 100 12 chr4 3716809 3717229 -198611118 + MLT1C LTR MaLR 1 457 -10 521 118 0 21 chr4 3717473 3717566 -198610781 + (TCCC)n Simple_repeat Simple_repeat 2 92 0 579 244 72 16 chr4 3719639 3719832 -198608515 - MER21B LTR ERV1 -45 818 615 332 182 39 0 chr4 3719829 3719906 -198608441 - MER21B LTR ERV1 -169 694 615 * 2026 196 70 0 chr4 3719903 3720347 -198608000 - MER21B LTR ERV1 -169 694 220 366 159 0 0 chr4 3720354 3720417 -198607930 - MER21B LTR ERV1 -581 282 220 374 113 0 70 chr4 3720424 3720495 -198607852 - MER21B LTR ERV1 -581 282 217 * 1460 165 14 25 chr4 3720494 3720779 -198607568 - MER21B LTR ERV1 -581 282 1 323 324 99 38 chr4 3720931 3721193 -198607154 + L2 LINE L2 3001 3278 -35 244 350 49 0 chr4 3721309 3721432 -198606915 - MIR SINE MIR -132 130 2 321 288 174 29 chr4 3721552 3721833 -198606514 - L2 LINE L2 -2 3270 2949 317 284 88 10 chr4 3721908 3722102 -198606245 + L1MEc LINE L1 35 243 -6153 4094 269 50 10 chr4 3722174 3723693 -198604654 + L1MEc LINE L1 2167 3700 -2515 441 306 38 25 chr4 3723932 3724089 -198604258 - MIR SINE MIR -66 196 38 1032 191 14 0 chr4 3725284 3725494 -198602853 - Tigger2 DNA MER2_type -25 2693 2481 1979 160 0 0 chr4 3725495 3725807 -198602540 + AluJb SINE Alu 1 312 0 467 262 74 87 chr4 3726007 3726236 -198602111 - HAL1 LINE L1 -1189 1318 1093 361 292 72 41 chr4 3727615 3727810 -198600537 - MIR SINE MIR -2 260 60 571 250 61 80 chr4 3728097 3728473 -198599874 + MLT1B LTR MaLR 7 375 -15 213 325 26 0 chr4 3729197 3729311 -198599036 + (TGAG)n Simple_repeat Simple_repeat 2 118 0 450 336 80 6 chr4 3730492 3730816 -198597531 - LTR16A1 LTR ERVL -51 406 59 312 208 78 0 chr4 3730935 3731012 -198597335 + MLT1A1 LTR MaLR 1 83 -291 1203 200 102 10 chr4 3731232 3731565 -198596782 + MLT1A1 LTR MaLR 43 365 0 338 361 38 13 chr4 3732337 3732495 -198595852 - HAL1b LINE L1 -673 675 514 271 174 37 28 chr4 3734068 3734147 -198594200 + MIR SINE MIR 106 184 -78 196 342 146 19 chr4 3734314 3734630 -198593717 + L2 LINE L2 2842 3197 -75 1328 226 72 0 chr4 3734677 3735036 -198593311 - L1MB3 LINE L1 -23 6160 5776 273 352 40 8 chr4 3735060 3735185 -198593162 - L3 LINE CR1 -90 1487 1359 202 258 21 0 chr4 3735589 3735653 -198592694 + MIR SINE MIR 94 158 -104 459 233 0 0 chr4 3736971 3737100 -198591247 + (TG)n Simple_repeat Simple_repeat 1 129 0 233 305 191 0 chr4 3737117 3737222 -198591125 + MIR SINE MIR 22 146 -62 214 316 235 30 chr4 3737366 3737762 -198590585 + L2 LINE L2 2298 2774 -540 235 250 18 0 chr4 3738202 3738258 -198590089 - MIR3 SINE MIR -43 165 109 474 269 83 0 chr4 3739933 3740089 -198588258 - MER57A LTR ERV1 0 403 235 498 221 31 0 chr4 3740098 3740225 -198588122 - MER57A LTR ERV1 -272 131 1 1210 217 127 42 chr4 3740283 3740693 -198587654 + LTR56 LTR ERV1 1 445 0 203 163 0 61 chr4 3741494 3741543 -198586804 + CT-rich Low_complexity Low_complexity 6 51 0 427 256 51 70 chr4 3741560 3741716 -198586631 - MIR SINE MIR -2 260 108 756 219 12 0 chr4 3743291 3743460 -198584887 - MER41D LTR ERV1 0 557 387 434 271 87 5 chr4 3744747 3744965 -198583382 + MER89 LTR ERV1 1 236 -323 707 35 40 52 chr4 3744965 3745139 -198583208 + (TG)n Simple_repeat Simple_repeat 1 172 0 576 125 0 61 chr4 3747262 3747790 -198580557 + (TG)n Simple_repeat Simple_repeat 1 495 0 384 271 16 8 chr4 3748701 3748823 -198579524 + MER45A DNA AcHobo 37 159 -19 1026 155 3 8 chr4 3749609 3749984 -198578363 + (TCCA)n Simple_repeat Simple_repeat 1 372 0 183 80 0 0 chr4 3750000 3750025 -198578322 + (TTCC)n Simple_repeat Simple_repeat 2 26 0 257 329 125 54 chr4 3750028 3750323 -198578024 - L2 LINE L2 0 3272 2957 945 224 13 47 chr4 3750568 3750800 -198577547 - MER58A DNA MER1_type 0 224 1 1174 277 83 29 chr4 3751331 3751814 -198576533 + MLT1H LTR MaLR 37 545 -4 223 120 20 20 chr4 3751869 3751919 -198576428 + GA-rich Low_complexity Low_complexity 4 53 0 218 214 0 36 chr4 3751967 3752023 -198576324 + GA-rich Low_complexity Low_complexity 2 55 0 856 79 28 17 chr4 3752106 3752283 -198576064 + (CA)n Simple_repeat Simple_repeat 2 180 0 233 384 13 25 chr4 3752872 3753031 -198575316 + L2 LINE L2 2724 2880 -434 189 273 0 0 chr4 3754626 3754670 -198573677 - MIR SINE MIR -3 259 216 698 299 40 26 chr4 3755462 3755810 -198572537 - L1M4 LINE L1 -1241 4905 4553 241 241 17 0 chr4 3756467 3756525 -198571822 + CT-rich Low_complexity Low_complexity 2 60 0 1355 179 50 22 chr4 3756776 3757072 -198571275 - MLT1A2 LTR MaLR 0 374 67 2906 85 0 8 chr4 3757072 3757450 -198570897 + THE1C LTR MaLR 1 375 0 1355 179 50 22 chr4 3757450 3757471 -198570876 - MLT1A2 LTR MaLR -307 67 48 23 0 0 0 chr4 3757854 3757877 -198570470 + AT_rich Low_complexity Low_complexity 1 23 0 401 318 28 5 chr4 3758389 3758600 -198569747 - L1MC4 LINE L1 -1029 7013 6798 1018 126 6 16 chr4 3759118 3759188 -198569159 + (TCCC)n Simple_repeat Simple_repeat 1 249 0 1018 126 6 16 chr4 3759188 3759370 -198568977 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 201 293 0 0 chr4 3760283 3760358 -198567989 + GA-rich Low_complexity Low_complexity 1 75 0 192 380 50 0 chr4 3760713 3760813 -198567534 + MIR SINE MIR 79 183 -79 455 247 0 46 chr4 3762332 3762707 -198565640 + GA-rich Low_complexity Low_complexity 1 357 0 273 325 6 24 chr4 3762664 3762830 -198565517 + G-rich Low_complexity Low_complexity 4 166 0 * 303 186 70 23 chr4 3762751 3762880 -198565467 + (TGAG)n Simple_repeat Simple_repeat 2 136 0 243 243 0 34 chr4 3762884 3763061 -198565286 + GA-rich Low_complexity Low_complexity 4 174 0 1874 131 19 44 chr4 3764599 3764919 -198563428 - AluSx SINE Alu 0 312 1 492 294 37 0 chr4 3764935 3765122 -198563225 - L1MC3 LINE L1 -9 7776 7583 254 191 0 0 chr4 3765242 3765289 -198563058 - L1MC3 LINE L1 -636 7149 7103 586 263 97 64 chr4 3765347 3765720 -198562627 + MLT1D LTR MaLR 6 390 -115 2214 92 0 31 chr4 3766134 3766451 -198561896 + AluY SINE Alu 1 307 -4 1334 209 40 62 chr4 3766501 3766987 -198561360 + MER51A LTR ERV1 1 634 0 318 291 146 25 chr4 3767154 3767312 -198561035 + MIR SINE MIR 8 184 -78 361 385 23 8 chr4 3769124 3769381 -198558966 - HERVL LTR ERVL -1048 4606 4346 363 228 0 0 chr4 3770183 3770275 -198558072 + (CA)n Simple_repeat Simple_repeat 1 92 0 267 316 54 57 chr4 3770542 3770874 -198557473 + L1 LINE L1 3522 3852 -2294 211 279 49 0 chr4 3770931 3770992 -198557355 - L2 LINE L2 0 3313 3250 21 36 0 0 chr4 3770996 3771024 -198557323 + AT_rich Low_complexity Low_complexity 1 28 0 2484 68 0 3 chr4 3771321 3771632 -198556715 + AluY SINE Alu 1 310 -1 355 273 93 19 chr4 3772188 3772349 -198555998 - Charlie8 DNA MER1_type -2184 233 61 971 247 160 9 chr4 3773321 3773665 -198554682 + MSTD LTR MaLR 1 396 0 212 320 102 15 chr4 3774177 3774383 -198553964 - L2 LINE L2 -637 2677 2454 388 344 60 14 chr4 3774880 3775098 -198553249 - MIR SINE MIR -22 240 13 287 287 48 26 chr4 3775933 3776304 -198552043 - L1ME LINE L1 -601 5563 5177 353 343 62 21 chr4 3776424 3776893 -198551454 - L1ME LINE L1 -968 5178 4691 470 294 76 34 chr4 3776896 3777134 -198551213 - L2 LINE L2 0 3313 3066 3843 255 113 40 chr4 3777174 3777651 -198550696 - L1ME2 LINE L1 -1 6163 5722 2162 136 146 11 chr4 3777651 3778027 -198550320 - MSTA LTR MaLR 0 428 2 3843 255 113 40 chr4 3778027 3780077 -198548270 - L1ME2 LINE L1 -442 5722 3443 3550 179 159 90 chr4 3780058 3780594 -198547753 - L1MC3 LINE L1 -3 7782 7285 * 229 322 23 0 chr4 3780594 3780681 -198547666 - MLT1F1 LTR MaLR -442 125 37 3550 179 159 90 chr4 3780681 3781353 -198546994 - L1MC3 LINE L1 -500 7285 6398 420 305 35 6 chr4 3781351 3781525 -198546822 - L1ME2 LINE L1 -2711 3435 3257 * 724 332 47 32 chr4 3781529 3781972 -198546375 - L2 LINE L2 -2152 1162 713 258 267 120 0 chr4 3782114 3782189 -198546158 + MIR SINE MIR 161 244 -18 1716 184 0 28 chr4 3782193 3782513 -198545834 + AluJb SINE Alu 1 311 -1 893 233 76 76 chr4 3782738 3783185 -198545162 - MLT1C LTR MaLR -18 449 3 273 307 50 28 chr4 3783368 3783547 -198544800 + L1ME4a LINE L1 5938 6120 -1 180 0 0 0 chr4 3784387 3784407 -198543940 + (CTG)n Simple_repeat Simple_repeat 1 20 0 516 161 12 43 chr4 3784444 3784606 -198543741 + G-rich Low_complexity Low_complexity 5 161 0 202 310 17 0 chr4 3784668 3784726 -198543621 + (CGGG)n Simple_repeat Simple_repeat 1 59 0 225 208 0 31 chr4 3784824 3784920 -198543427 + (AATTG)n Simple_repeat Simple_repeat 2 94 0 281 276 66 4 chr4 3786649 3786752 -198541595 + MIR SINE MIR 43 148 -60 467 307 67 21 chr4 3787270 3787508 -198540839 + L1MC2 LINE L1 6087 6335 -9 442 223 10 10 chr4 3788376 3788479 -198539868 - MER81 DNA DNA 0 114 12 381 302 71 28 chr4 3788755 3788937 -198539410 + MIR SINE MIR 70 259 -3 243 302 123 12 chr4 3788945 3789128 -198539219 - MIR SINE MIR -38 170 13 264 233 155 39 chr4 3789672 3789775 -198538572 + L2 LINE L2 679 793 -2521 210 342 141 38 chr4 3789989 3790308 -198538039 + L2 LINE L2 2933 3284 -29 197 200 0 0 chr4 3791459 3791499 -198536848 + MIR SINE MIR 107 146 -62 243 0 0 0 chr4 3793242 3793269 -198535078 + (TCCA)n Simple_repeat Simple_repeat 1 27 0 180 217 0 0 chr4 3793321 3793367 -198534980 + (CCCA)n Simple_repeat Simple_repeat 4 49 0 212 235 59 0 chr4 3793765 3793833 -198534514 - L2 LINE L2 -4 3268 3197 298 309 0 19 chr4 3794444 3794562 -198533785 + MIR SINE MIR 33 144 -87 324 292 26 39 chr4 3795754 3795908 -198532439 + L2 LINE L2 3121 3272 0 233 343 86 14 chr4 3796613 3796744 -198531603 - MIR3 SINE MIR -58 150 7 1143 265 60 34 chr4 3796744 3797129 -198531218 + MLT2C1 LTR ERVL 3 397 0 354 301 0 35 chr4 3797389 3797502 -198530845 + MIR SINE MIR 13 121 -141 1616 226 106 47 chr4 3797657 3798147 -198530200 - MLT2B1 LTR ERVL 0 520 2 541 178 11 17 chr4 3798436 3798616 -198529731 + (TG)n Simple_repeat Simple_repeat 1 179 0 602 172 0 32 chr4 3798632 3798818 -198529529 + (TG)n Simple_repeat Simple_repeat 1 180 0 709 153 9 18 chr4 3798841 3799169 -198529178 + (TG)n Simple_repeat Simple_repeat 1 324 0 275 152 0 15 chr4 3799184 3799250 -198529097 + (TG)n Simple_repeat Simple_repeat 1 65 0 430 257 133 9 chr4 3800505 3800782 -198527565 + MLT1C LTR MaLR 47 346 -44 378 301 55 7 chr4 3801424 3801570 -198526777 - L2 LINE L2 -195 3077 2925 525 293 118 84 chr4 3801932 3803568 -198524779 - HAL1 LINE L1 0 2507 816 254 408 25 0 chr4 3803711 3803907 -198524440 + L1MC/D LINE L1 5697 5897 -1911 293 347 48 8 chr4 3806154 3806278 -198522069 + MER5A DNA MER1_type 61 189 0 374 236 39 34 chr4 3806551 3806729 -198521618 + (TGGG)n Simple_repeat Simple_repeat 1 179 0 263 223 62 108 chr4 3807220 3807350 -198520997 - MLT1H LTR MaLR -17 532 421 186 222 0 0 chr4 3807751 3807805 -198520542 + GA-rich Low_complexity Low_complexity 4 57 0 280 338 66 15 chr4 3808693 3808829 -198519518 + MIR SINE MIR 107 249 -13 192 354 18 26 chr4 3809360 3809473 -198518874 - MIR SINE MIR -124 138 27 456 294 47 41 chr4 3809941 3810111 -198518236 - MIR SINE MIR -90 172 2 772 151 0 27 chr4 3810329 3810514 -198517833 + GA-rich Low_complexity Low_complexity 1 180 0 864 141 0 27 chr4 3810529 3810714 -198517633 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 834 164 0 16 chr4 3810708 3810891 -198517456 + GA-rich Low_complexity Low_complexity 1 180 0 * 2556 27 0 0 chr4 3811890 3812187 -198516160 - AluY SINE Alu -14 297 1 252 153 38 99 chr4 3814723 3814854 -198513493 + G-rich Low_complexity Low_complexity 4 126 0 389 188 16 83 chr4 3814874 3815066 -198513281 + G-rich Low_complexity Low_complexity 2 180 0 391 99 25 86 chr4 3815083 3815164 -198513183 + L1MC1 LINE L1 6240 6315 -18 1055 80 0 0 chr4 3815601 3815739 -198512608 + MER85 DNA T2_type 1 138 -1 653 288 40 0 chr4 3817148 3817346 -198511001 + MIR SINE MIR 1 206 -56 239 246 16 0 chr4 3819830 3819891 -198508456 - L2 LINE L2 -70 3243 3182 1643 118 141 0 chr4 3820194 3820457 -198507890 - AluJo SINE Alu -12 300 1 705 295 129 3 chr4 3820689 3821021 -198507326 - HAL1 LINE L1 -628 1879 1506 1196 88 13 0 chr4 3821032 3821191 -198507156 + AluSc SINE Alu 130 290 -19 771 341 156 21 chr4 3821191 3821666 -198506681 - HAL1 LINE L1 -1010 1497 959 190 381 38 19 chr4 3822320 3822480 -198505867 - L2 LINE L2 -564 2750 2588 183 114 0 0 chr4 3822800 3822835 -198505512 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2300 68 0 7 chr4 3822837 3823131 -198505216 - AluY SINE Alu -19 292 1 2116 202 42 13 chr4 3823408 3823859 -198504488 + MLT1C LTR MaLR 2 465 -2 181 292 167 8 chr4 3825079 3825199 -198503148 + MIR3 SINE MIR 12 150 -58 614 302 22 0 chr4 3825742 3825967 -198502380 - MLT1E2 LTR MaLR -17 609 380 977 220 73 32 chr4 3825968 3826281 -198502066 + MLT2D LTR ERVL 5 330 -84 402 57 0 0 chr4 3826282 3826335 -198502012 + (CA)n Simple_repeat Simple_repeat 1 53 0 1040 276 32 34 chr4 3826384 3826764 -198501583 - MLT1E2 LTR MaLR -247 379 1 343 151 82 0 chr4 3827137 3827210 -198501137 - MLT1H LTR MaLR 0 549 471 353 321 18 0 chr4 3827554 3827663 -198500684 + MIR SINE MIR 81 191 -71 493 270 23 23 chr4 3828045 3828219 -198500128 - MLT1K LTR MaLR -21 567 394 331 276 57 0 chr4 3828913 3829036 -198499311 - LTR33 LTR ERVL -308 213 84 330 361 104 17 chr4 3829129 3829359 -198498988 + L1MC4a LINE L1 4422 4671 -1475 371 302 74 18 chr4 3829561 3829948 -198498399 + L1MC4a LINE L1 4909 5306 -840 740 244 14 14 chr4 3829981 3830194 -198498153 - L1MC/D LINE L1 -2294 5514 5302 433 333 165 2 chr4 3830185 3830585 -198497762 + L1MC4a LINE L1 5852 6316 -1492 * 252 0 0 0 chr4 3831194 3831222 -198497125 + (TG)n Simple_repeat Simple_repeat 2 29 0 987 235 20 24 chr4 3831395 3831689 -198496658 + L1MC4 LINE L1 6772 7064 -978 420 176 35 7 chr4 3831755 3831897 -198496450 + (TAGA)n Simple_repeat Simple_repeat 2 147 0 542 325 86 53 chr4 3832187 3832830 -198495517 + L1MC4 LINE L1 7378 8041 -1 202 260 77 39 chr4 3833283 3833387 -198494960 + MER5A DNA MER1_type 7 114 -75 1823 191 91 7 chr4 3833836 3834265 -198494082 - L1MB3 LINE L1 -4 6179 5715 235 254 0 0 chr4 3834814 3834869 -198493478 - L2 LINE L2 -18 3254 3200 312 27 0 0 chr4 3835733 3835770 -198492577 + (TG)n Simple_repeat Simple_repeat 2 38 0 220 310 96 48 chr4 3837635 3837864 -198490483 - L2 LINE L2 -177 3095 2856 222 291 47 12 chr4 3838672 3838758 -198489589 - MIR3 SINE MIR -14 194 106 262 147 35 78 chr4 3838924 3839040 -198489307 + (CCCTAA)n Simple_repeat Simple_repeat 6 116 0 4279 167 12 14 chr4 3839119 3839842 -198488505 + MER72 LTR ERV1 1 722 0 436 239 11 0 chr4 3839860 3839948 -198488399 + L2 LINE L2 3224 3312 -1 622 181 97 68 chr4 3840028 3840249 -198488098 - MLT1B LTR MaLR -25 480 136 1053 139 0 11 chr4 3940272 3940810 -198387537 + (CATTC)n Satellite Satellite 1 532 0 1086 124 0 5 chr4 3940821 3941255 -198387092 + (CATTC)n Satellite Satellite 1 431 0 1110 127 0 0 chr4 3941299 3941659 -198386688 + (CATTC)n Satellite Satellite 1 360 0 306 147 0 0 chr4 3941682 3941750 -198386597 + (CATTC)n Satellite Satellite 2 69 0 1093 129 2 27 chr4 3941891 3942434 -198385913 + (CATTC)n Satellite Satellite 1 529 0 945 131 0 16 chr4 3942464 3942828 -198385519 + (CATTC)n Satellite Satellite 1 359 0 1110 100 0 0 chr4 3942869 3943049 -198385298 + (CATTC)n Satellite Satellite 1 180 0 514 164 0 51 chr4 3943065 3943242 -198385105 + (CATTC)n Satellite Satellite 2 169 0 1068 115 0 0 chr4 3943347 3943611 -198384736 + (CATTC)n Satellite Satellite 1 264 0 927 139 0 0 chr4 3943622 3943802 -198384545 + (CATTC)n Satellite Satellite 1 180 0 781 129 6 6 chr4 3943818 3943981 -198384366 + (CATTC)n Satellite Satellite 2 164 0 1101 105 0 0 chr4 3943993 3944342 -198384005 + (CATTC)n Satellite Satellite 1 349 0 264 30 0 0 chr4 3944353 3944386 -198383961 + (CATTC)n Satellite Satellite 2 34 0 1092 112 0 25 chr4 3944398 3944841 -198383506 + (CATTC)n Satellite Satellite 1 432 0 781 129 6 6 chr4 3944853 3945016 -198383331 + (CATTC)n Satellite Satellite 2 164 0 1044 104 0 4 chr4 3945028 3945258 -198383089 + (CATTC)n Satellite Satellite 2 230 0 1104 130 0 8 chr4 3945277 3945637 -198382710 + (CATTC)n Satellite Satellite 1 358 0 1122 100 0 0 chr4 3945681 3945861 -198382486 + (CATTC)n Satellite Satellite 1 180 0 1068 106 0 0 chr4 3945872 3946051 -198382296 + (CATTC)n Satellite Satellite 2 180 0 1035 146 2 6 chr4 3946072 3946586 -198381761 + (CATTC)n Satellite Satellite 1 511 0 320 43 22 0 chr4 3946691 3946737 -198381610 + (GAATG)n Satellite Satellite 2 48 0 882 131 0 0 chr4 3946749 3946917 -198381430 + (GAATG)n Satellite Satellite 2 169 0 1081 105 4 4 chr4 3946929 3947182 -198381165 + (GAATG)n Satellite Satellite 1 253 0 938 117 0 6 chr4 3947197 3947368 -198380979 + (GAATG)n Satellite Satellite 2 171 0 282 29 0 0 chr4 3947383 3947418 -198380929 + (GAATG)n Satellite Satellite 2 36 0 787 136 6 6 chr4 3947446 3947622 -198380725 + (GAATG)n Satellite Satellite 2 177 0 876 149 0 0 chr4 3947634 3947808 -198380539 + (GAATG)n Satellite Satellite 1 174 0 360 111 0 0 chr4 3947819 3947882 -198380465 + (GAATG)n Satellite Satellite 2 64 0 1311 85 0 5 chr4 3947903 3948452 -198379895 + (GAATG)n Satellite Satellite 2 721 0 390 159 0 0 chr4 3948464 3948552 -198379795 + (GAATG)n Satellite Satellite 2 89 0 1026 132 0 13 chr4 3948568 3949212 -198379135 + (GAATG)n Satellite Satellite 1 813 0 855 111 0 36 chr4 3949340 3949620 -198378727 + (GAATG)n Satellite Satellite 1 269 0 270 132 0 0 chr4 3949631 3949684 -198378663 + (GAATG)n Satellite Satellite 2 54 0 1062 99 0 0 chr4 3949696 3949867 -198378480 + (GAATG)n Satellite Satellite 4 174 0 929 128 0 23 chr4 3949898 3950509 -198377838 + (GAATG)n Satellite Satellite 1 773 0 881 124 0 27 chr4 3950525 3950710 -198377637 + (GAATG)n Satellite Satellite 1 180 0 951 110 0 0 chr4 3950729 3950934 -198377413 + (GAATG)n Satellite Satellite 1 205 0 618 189 0 0 chr4 3950949 3951124 -198377223 + (GAATG)n Satellite Satellite 2 176 0 1026 122 0 0 chr4 3951145 3951325 -198377022 + (GAATG)n Satellite Satellite 1 180 0 954 121 0 0 chr4 3951336 3951544 -198376803 + (GAATG)n Satellite Satellite 1 208 0 1047 112 0 0 chr4 3951560 3951739 -198376608 + (GAATG)n Satellite Satellite 2 180 0 268 169 12 12 chr4 3951751 3951834 -198376513 + (GAATG)n Satellite Satellite 2 84 0 991 106 6 6 chr4 3951845 3952024 -198376323 + (GAATG)n Satellite Satellite 2 180 0 1122 100 0 0 chr4 3952035 3952215 -198376132 + (GAATG)n Satellite Satellite 1 180 0 939 153 0 0 chr4 3952259 3952622 -198375725 + (GAATG)n Satellite Satellite 1 363 0 969 146 0 2 chr4 3952638 3952957 -198375390 + (GAATG)n Satellite Satellite 1 498 0 858 107 0 0 chr4 3952972 3953122 -198375225 + (GAATG)n Satellite Satellite 2 151 0 1140 101 0 0 chr4 3953133 3953311 -198375036 + (GAATG)n Satellite Satellite 3 180 0 261 155 0 0 chr4 3953327 3953385 -198374962 + (GAATG)n Satellite Satellite 4 61 0 1014 121 0 11 chr4 3953403 3953767 -198374580 + (GAATG)n Satellite Satellite 1 538 0 1014 155 0 0 chr4 3953778 3954197 -198374150 + (GAATG)n Satellite Satellite 1 419 0 1132 77 5 5 chr4 3954208 3954417 -198373930 + (GAATG)n Satellite Satellite 1 209 0 1191 81 0 0 chr4 3954428 3954601 -198373746 + (GAATG)n Satellite Satellite 2 174 0 383 170 10 0 chr4 3954614 3954714 -198373633 + (GAATG)n Satellite Satellite 2 102 0 270 284 15 0 chr4 4155307 4155374 -198172973 + MER112 DNA MER1_type 18 85 -175 1502 128 54 0 chr4 4155459 4155701 -198172646 - AluJo SINE Alu -57 255 1 2010 127 0 13 chr4 4155711 4156026 -198172321 - AluSx SINE Alu -1 311 1 1976 123 3 13 chr4 4156038 4156354 -198171993 - AluSq SINE Alu 0 313 1 180 333 78 31 chr4 4157317 4157446 -198170901 + MIR3 SINE MIR 11 145 -63 468 125 14 0 chr4 4158301 4158373 -198169974 - AluS SINE Alu -238 74 2 1926 255 30 11 chr4 4158373 4159369 -198168978 - L1MB3 LINE L1 -351 5832 4818 1940 113 3 3 chr4 4159414 4159715 -198168632 + AluSp SINE Alu 1 301 -12 1102 216 2 121 chr4 4159785 4159992 -198168355 - L1MA4 LINE L1 -170 6130 5900 1482 179 0 4 chr4 4159992 4160272 -198168075 - AluSx SINE Alu -32 280 2 1102 216 2 121 chr4 4160272 4160314 -198168033 - L1MA4 LINE L1 -400 5900 5855 2633 20 0 0 chr4 4160314 4160615 -198167732 + AluY SINE Alu 11 311 0 1102 216 2 121 chr4 4160615 4160777 -198167570 - L1MA4 LINE L1 -445 5855 5767 1973 124 0 31 chr4 4160963 4161286 -198167061 + AluSp SINE Alu 1 313 0 380 228 74 74 chr4 4161429 4161578 -198166769 + MER5B DNA MER1_type 25 173 -5 697 228 46 0 chr4 4161681 4161878 -198166469 - MER6B DNA MER2_type 0 210 5 2224 108 0 6 chr4 4164312 4164627 -198163720 - AluSq SINE Alu 0 313 1 594 233 29 86 chr4 4164694 4164784 -198163563 + L1MEd LINE L1 23 117 -6002 2027 105 11 0 chr4 4164784 4165070 -198163277 + AluSq SINE Alu 1 289 -24 243 0 0 0 chr4 4165075 4165102 -198163245 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 594 233 29 86 chr4 4165102 4165215 -198163132 + L1MEd LINE L1 121 220 -5899 1102 267 58 47 chr4 4165276 4165513 -198162834 + L1MEd LINE L1 329 575 -5544 2123 86 17 3 chr4 4165513 4165803 -198162544 + AluSq SINE Alu 1 294 -19 1102 267 58 47 chr4 4165803 4166010 -198162337 + L1MEd LINE L1 575 778 -5341 341 247 0 12 chr4 4166094 4166179 -198162168 + MLT1E LTR MaLR 36 119 -474 626 234 0 23 chr4 4166179 4166377 -198161970 - FLAM_C SINE Alu 0 143 2 2063 100 21 0 chr4 4166387 4166676 -198161671 - AluSx SINE Alu -17 295 1 236 263 13 40 chr4 4166684 4166760 -198161587 + MLT1E3 LTR MaLR 12 85 -569 327 277 37 9 chr4 4166775 4166990 -198161357 + MLT1E3 LTR MaLR 193 397 -227 1835 206 101 30 chr4 4166994 4168096 -198160251 - SATR1 Satellite Satellite -20 1179 1 315 211 11 63 chr4 4168172 4168362 -198159985 + (TTA)n Simple_repeat Simple_repeat 1 180 0 2082 206 144 13 chr4 4168476 4169692 -198158655 - SATR1 Satellite Satellite -24 1374 1 2145 192 108 12 chr4 4169730 4170524 -198157823 - SATR1 Satellite Satellite -2 870 1 25057 101 13 14 chr4 4170878 4174665 -198153682 + HERVE LTR ERV1 1108 4945 -2868 2135 204 106 2 chr4 4174671 4175920 -198152427 - SATR1 Satellite Satellite 0 1379 1 2055 155 111 40 chr4 4175937 4176498 -198151849 - SATR1 Satellite Satellite 0 600 1 892 219 286 9 chr4 4176528 4176857 -198151490 - SATR1 Satellite Satellite -3 467 48 1305 101 29 14 chr4 4176861 4177068 -198151279 - AluSq SINE Alu -91 222 13 4057 107 35 2 chr4 4178053 4178688 -198149659 - L1PA5 LINE L1 -32 6122 5467 2086 123 0 3 chr4 4178867 4179169 -198149178 - AluSg SINE Alu -9 301 1 1796 237 24 26 chr4 4179172 4179640 -198148707 - MLT1C LTR MaLR 0 467 1 2674 142 19 54 chr4 4179648 4179773 -198148574 + L1MA8 LINE L1 5719 5847 -444 1678 160 3 35 chr4 4179773 4179915 -198148432 + AluJb SINE Alu 1 146 -166 1984 75 104 4 chr4 4179915 4180195 -198148152 + AluSp SINE Alu 2 309 -4 1678 160 3 35 chr4 4180195 4180365 -198147982 + AluJb SINE Alu 146 303 -9 2674 142 19 54 chr4 4180365 4180760 -198147587 + L1MA8 LINE L1 5847 6221 -70 7558 111 54 11 chr4 4180765 4181921 -198146426 - HSMAR2 DNA Mariner -5 1297 93 309 262 123 41 chr4 4182432 4182554 -198145793 - MIR SINE MIR -7 255 124 760 129 313 0 chr4 4182559 4182706 -198145641 - MER46A DNA MER2_type 0 236 44 198 274 39 0 chr4 4182728 4182779 -198145568 - MIR SINE MIR -165 97 45 23 0 0 0 chr4 4183036 4183059 -198145288 + AT_rich Low_complexity Low_complexity 1 23 0 873 136 8 0 chr4 4183634 4183766 -198144581 + FLAM_A SINE Alu 1 133 0 202 308 70 64 chr4 4183958 4184130 -198144217 - L2 LINE L2 -3061 253 81 1131 183 0 24 chr4 4184931 4185144 -198143203 + AluJo SINE Alu 85 292 -20 1802 149 3 13 chr4 4186242 4186543 -198141804 + AluJb SINE Alu 1 298 -14 271 284 65 7 chr4 4186551 4186706 -198141641 + L1ME4a LINE L1 5956 6119 -2 490 264 87 5 chr4 4186730 4186938 -198141409 + L1MC4a LINE L1 5674 5898 -1910 892 253 80 118 chr4 4186943 4187579 -198140768 + L1ME3A LINE L1 5559 6170 0 2099 104 3 28 chr4 4188286 4188604 -198139743 + AluSp SINE Alu 1 310 -3 544 276 144 0 chr4 4189164 4189338 -198139009 + MIR SINE MIR 13 211 -51 2018 119 3 19 chr4 4189386 4189698 -198138649 - AluSx SINE Alu -5 307 1 380 201 166 14 chr4 4189805 4189944 -198138403 + MER106B DNA MER1_type 865 1024 -35 292 43 109 0 chr4 4189937 4189983 -198138364 - MER106A DNA MER1_type -13 223 173 * 2193 102 0 0 chr4 4190014 4190309 -198138038 - AluSq SINE Alu -18 295 1 212 280 224 28 chr4 4190355 4190462 -198137885 - MER5B DNA MER1_type 0 178 51 2374 41 0 10 chr4 4190581 4190872 -198137475 - AluY SINE Alu -23 288 1 214 358 0 0 chr4 4191250 4191331 -198137016 + MIR SINE MIR 59 139 -69 1847 131 13 23 chr4 4191684 4191989 -198136358 + AluJb SINE Alu 1 302 -10 509 138 0 0 chr4 4193168 4193255 -198135092 - L1MA9 LINE L1 0 6312 6226 1147 135 53 55 chr4 4193266 4193556 -198134791 - L1MA9 LINE L1 -15 6285 6007 191 175 79 79 chr4 4193560 4193623 -198134724 + L2 LINE L2 3202 3264 -8 2039 77 0 58 chr4 4194244 4194554 -198133793 - AluSg SINE Alu -18 292 1 286 236 89 102 chr4 4194596 4194753 -198133594 + MIR3 SINE MIR 36 190 -18 408 268 126 35 chr4 4195186 4195384 -198132963 - L1MC/D LINE L1 -2018 5790 5575 300 266 65 81 chr4 4196505 4196629 -198131718 - L2 LINE L2 -14 3258 3137 181 200 25 0 chr4 4196672 4196712 -198131635 - L2 LINE L2 -1 3271 3231 2060 102 23 0 chr4 4197001 4197304 -198131043 + AluSg SINE Alu 1 310 0 2005 116 9 38 chr4 4197880 4198200 -198130147 + AluSq SINE Alu 1 311 -2 326 289 250 19 chr4 4198344 4198552 -198129795 + MIR SINE MIR 7 262 0 921 253 37 17 chr4 4199144 4199385 -198128962 + MIR SINE MIR 17 262 0 22 0 0 0 chr4 4199423 4199445 -198128902 + AT_rich Low_complexity Low_complexity 1 22 0 363 169 26 39 chr4 4199557 4199634 -198128713 + MIR SINE MIR 187 262 0 1395 80 0 50 chr4 4199805 4200005 -198128342 - AluSc SINE Alu -13 296 107 2507 55 0 0 chr4 4200006 4200313 -198128034 - AluY SINE Alu -4 307 1 312 240 69 98 chr4 4200313 4200517 -198127830 - L1MC/D LINE L1 -515 5606 5409 3111 81 39 9 chr4 4200956 4201348 -198126999 + MLT2A1 LTR ERVL 1 409 -35 318 106 0 0 chr4 4201348 4201395 -198126952 + (TA)n Simple_repeat Simple_repeat 2 48 0 3111 81 39 9 chr4 4201395 4201433 -198126914 + MLT2A1 LTR ERVL 409 444 0 272 197 13 53 chr4 4201445 4201476 -198126871 + (TAA)n Simple_repeat Simple_repeat 2 33 -41 805 153 0 0 chr4 4201476 4201594 -198126753 + FLAM_C SINE Alu 1 118 -15 272 197 13 53 chr4 4201594 4201638 -198126709 + (TAA)n Simple_repeat Simple_repeat 33 74 0 275 311 19 0 chr4 4201791 4201897 -198126450 + LTR16C LTR ERVL 17 124 -367 1994 168 109 26 chr4 4202735 4203017 -198125330 - LTR32 LTR ERVL 0 471 141 180 0 0 0 chr4 4203017 4203037 -198125310 + (CAGGA)n Simple_repeat Simple_repeat 5 24 0 1994 168 109 26 chr4 4203037 4203176 -198125171 - LTR32 LTR ERVL -330 141 15 632 253 104 22 chr4 4203179 4203361 -198124986 + MIR SINE MIR 47 243 -19 380 264 11 0 chr4 4203574 4203661 -198124686 - MIR SINE MIR -60 202 115 2187 104 0 0 chr4 4203937 4204235 -198124112 + AluSx SINE Alu 1 298 -14 648 174 0 3 chr4 4204235 4204350 -198123997 - LTR18A LTR ERVL -6 351 248 715 286 61 5 chr4 4204503 4204699 -198123648 - LTR18A LTR ERVL -147 210 4 398 272 48 48 chr4 4204812 4204959 -198123388 - MER117 DNA MER1_type -49 148 2 3984 99 5 0 chr4 4205176 4205731 -198122616 + L1PA10 LINE L1 5611 6168 0 21 0 0 0 chr4 4206078 4206099 -198122248 + GC_rich Low_complexity Low_complexity 1 21 0 1896 187 118 1 chr4 4206710 4207442 -198120905 - SATR1 Satellite Satellite -2 817 1 35 24 0 0 chr4 4207442 4207484 -198120863 + AT_rich Low_complexity Low_complexity 1 42 0 378 236 11 35 chr4 4207534 4207708 -198120639 + (TAA)n Simple_repeat Simple_repeat 3 172 0 22 35 0 0 chr4 4207755 4207784 -198120563 + AT_rich Low_complexity Low_complexity 1 29 0 1734 203 114 31 chr4 4207830 4208830 -198119517 + SATR1 Satellite Satellite 1 1083 -131 3478 219 16 62 chr4 4209103 4210119 -198118228 - LTR5 LTR ERVK 0 969 1 34 24 0 0 chr4 4210580 4210621 -198117726 + AT_rich Low_complexity Low_complexity 1 41 0 2774 245 24 39 chr4 4210632 4210882 -198117465 - L1MB3 LINE L1 -30 6153 5901 1914 124 36 0 chr4 4210882 4211156 -198117191 - AluSx SINE Alu -17 295 12 2774 245 24 39 chr4 4211156 4211256 -198117091 - L1MB3 LINE L1 -282 5901 5801 230 81 27 0 chr4 4211256 4211293 -198117054 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 1708 178 0 3 chr4 4211295 4211588 -198116759 - AluSx SINE Alu -12 300 9 2774 245 24 39 chr4 4211588 4212589 -198115758 - L1MB3 LINE L1 -383 5800 4818 2109 122 6 3 chr4 4212634 4212946 -198115401 + AluSp SINE Alu 1 313 0 1187 214 18 68 chr4 4213032 4213231 -198115116 - L1MA4 LINE L1 -170 6130 5958 1691 163 3 3 chr4 4213231 4213514 -198114833 - AluSx SINE Alu -29 283 1 1187 214 18 68 chr4 4213514 4213697 -198114650 - L1MA4 LINE L1 -342 5958 5767 282 259 105 35 chr4 4213735 4213878 -198114469 + HsTC2 DNA Tc2 1631 1783 -115 1971 151 0 34 chr4 4213883 4214207 -198114140 + AluSp SINE Alu 1 313 0 309 313 20 14 chr4 4214349 4214496 -198113851 + MER5B DNA MER1_type 25 172 -6 701 230 46 0 chr4 4214600 4214796 -198113551 - MER6B DNA MER2_type -1 209 5 1304 146 27 18 chr4 4216686 4216906 -198111441 + AluSq SINE Alu 1 222 -91 1945 186 119 24 chr4 4216911 4218768 -198109579 + SATR1 Satellite Satellite 1 2035 -62 1683 211 110 27 chr4 4218779 4219347 -198109000 + SATR1 Satellite Satellite 1 615 -20 27241 104 11 10 chr4 4219347 4223402 -198104945 - HERVE LTR ERV1 -2648 5165 1108 239 207 7 64 chr4 4223456 4223596 -198104751 + (TAA)n Simple_repeat Simple_repeat 1 132 0 1819 217 113 12 chr4 4223749 4225505 -198102842 + SATR1 Satellite Satellite 1 1933 -130 25122 108 12 12 chr4 4225512 4229344 -198099003 - HERVE LTR ERV1 -2869 4944 1110 292 219 5 59 chr4 4229407 4229594 -198098753 + (TAA)n Simple_repeat Simple_repeat 2 178 0 22 70 0 0 chr4 4229597 4229640 -198098707 + AT_rich Low_complexity Low_complexity 1 43 0 1404 240 122 40 chr4 4229687 4230679 -198097668 + SATR1 Satellite Satellite 1 1073 -144 554 227 258 2 chr4 4230780 4231056 -198097291 + SATR1 Satellite Satellite 1 346 -144 806 204 251 57 chr4 4231114 4231521 -198096826 + SATR1 Satellite Satellite 1 485 -2 863 235 206 40 chr4 4231541 4232838 -198095509 + SATR1 Satellite Satellite 1 1512 -405 2039 128 7 3 chr4 4234529 4234833 -198093514 + AluSq SINE Alu 1 305 -8 186 276 105 13 chr4 4234926 4235002 -198093345 - L2 LINE L2 -32 3240 3158 1904 103 0 8 chr4 4235256 4235517 -198092830 - AluSg SINE Alu -51 259 1 269 371 48 14 chr4 4235881 4236091 -198092256 + MIR SINE MIR 32 248 -14 34 0 0 0 chr4 4236879 4236913 -198091434 + AT_rich Low_complexity Low_complexity 1 34 0 2867 244 23 32 chr4 4236933 4237180 -198091167 - L1MB3 LINE L1 -32 6151 5903 1984 161 0 0 chr4 4237180 4237485 -198090862 - AluSx SINE Alu -7 305 1 2867 244 23 32 chr4 4237485 4237587 -198090760 - L1MB3 LINE L1 -280 5903 5802 2058 130 3 3 chr4 4237587 4237914 -198090433 - AluSx SINE Alu 0 327 1 2867 244 23 32 chr4 4237914 4238907 -198089440 - L1MB3 LINE L1 -381 5802 4818 2308 104 3 3 chr4 4238952 4239261 -198089086 + AluSp SINE Alu 1 309 -4 1151 199 2 108 chr4 4239340 4239563 -198088784 - L1MA4 LINE L1 -170 6130 5968 1682 187 0 3 chr4 4239563 4239847 -198088500 - AluSx SINE Alu -29 283 1 1151 199 2 108 chr4 4239847 4240030 -198088317 - L1MA4 LINE L1 -332 5968 5767 300 259 101 29 chr4 4240072 4240211 -198088136 + HsTC2 DNA Tc2 1637 1785 -113 2183 108 0 57 chr4 4240216 4240548 -198087799 + AluSp SINE Alu 1 313 0 339 272 88 0 chr4 4240743 4240857 -198087490 + MER5B DNA MER1_type 50 173 -5 320 173 37 12 chr4 4240961 4241042 -198087305 - MER6 DNA MER2_type 0 865 783 221 297 31 0 chr4 4242216 4242280 -198086067 + MER91 DNA MER1_type 125 190 0 1601 203 22 30 chr4 4242442 4242807 -198085540 - MLT1A1 LTR MaLR -3 362 1 739 313 114 16 chr4 4243365 4243863 -198084484 - L1ME3A LINE L1 -208 5962 5416 322 274 10 70 chr4 4244369 4244570 -198083777 + L1ME4a LINE L1 5676 5864 -257 223 320 152 8 chr4 4244604 4244729 -198083618 - MER5A DNA MER1_type -3 186 44 * 380 291 90 8 chr4 4244619 4244753 -198083594 + MER5A DNA MER1_type 37 181 -8 2308 113 0 0 chr4 4244902 4245202 -198083145 + AluSq SINE Alu 1 300 -13 1579 173 40 23 chr4 4245215 4245388 -198082959 - AluJo SINE Alu -7 305 123 216 0 0 0 chr4 4245388 4245412 -198082935 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1579 173 40 23 chr4 4245412 4245538 -198082809 - AluJo SINE Alu -189 123 1 331 214 60 0 chr4 4245580 4245664 -198082683 - MER20 DNA MER1_type -12 207 119 875 234 5 0 chr4 4245689 4245903 -198082444 + L1MA4 LINE L1 6071 6285 -15 33 0 0 0 chr4 4245910 4245943 -198082404 + AT_rich Low_complexity Low_complexity 1 33 0 288 194 32 16 chr4 4245943 4246005 -198082342 - MER20 DNA MER1_type -152 67 5 29 0 0 0 chr4 4246203 4246232 -198082115 + AT_rich Low_complexity Low_complexity 1 29 0 554 297 76 34 chr4 4246264 4246763 -198081584 + L1ME4a LINE L1 5578 6097 -24 239 286 43 0 chr4 4247849 4247919 -198080428 + MIR SINE MIR 117 189 -73 1477 268 90 39 chr4 4248096 4248660 -198079687 + MLT1E LTR MaLR 1 593 0 1764 144 25 9 chr4 4248705 4248778 -198079569 - MER2 DNA MER2_type 0 345 275 2243 114 3 13 chr4 4248778 4249093 -198079254 + AluSx SINE Alu 1 312 0 1764 144 25 9 chr4 4249093 4249338 -198079009 - MER2 DNA MER2_type -70 275 22 1060 293 157 39 chr4 4249340 4250490 -198077857 + L2 LINE L2 2006 3308 -5 225 250 19 0 chr4 4250490 4250542 -198077805 + GA-rich Low_complexity Low_complexity 1 53 0 1402 249 99 43 chr4 4250594 4251107 -198077240 + MLT1H1 LTR MaLR 14 555 0 293 265 20 20 chr4 4251108 4251210 -198077137 + L2 LINE L2 2291 2392 -922 1361 193 68 0 chr4 4251326 4251647 -198076700 + L1MB3 LINE L1 5839 6181 -2 21 26 0 26 chr4 4252476 4252493 -198075854 + AT_rich Low_complexity Low_complexity 1 17 -21 2119 118 0 3 chr4 4252493 4252780 -198075567 + AluSx SINE Alu 1 286 -26 21 26 0 26 chr4 4252780 4252801 -198075546 + AT_rich Low_complexity Low_complexity 17 38 0 248 284 95 14 chr4 4252938 4253012 -198075335 + L2 LINE L2 3188 3267 -5 394 281 98 66 chr4 4253503 4253930 -198074417 + L2 LINE L2 2553 3008 -264 236 105 0 0 chr4 4254018 4254056 -198074291 + MLT1J2 LTR MaLR 72 109 -341 371 308 60 34 chr4 4254076 4254342 -198074005 + MLT1J LTR MaLR 237 509 -2 328 306 96 25 chr4 4254428 4254585 -198073762 + L2 LINE L2 3097 3264 -8 2396 154 16 34 chr4 4254666 4254729 -198073618 + L1PA16 LINE L1 5724 5787 -379 1765 137 10 58 chr4 4254729 4254857 -198073490 + AluJo SINE Alu 6 139 -173 2072 108 0 17 chr4 4254857 4255152 -198073195 + AluSq SINE Alu 1 290 -23 1765 137 10 58 chr4 4255152 4255336 -198073011 + AluJo SINE Alu 139 303 -9 2396 154 16 34 chr4 4255336 4255720 -198072627 + L1PA16 LINE L1 5787 6163 -3 191 88 29 0 chr4 4256958 4256992 -198071355 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 469 248 0 54 chr4 4257011 4257160 -198071187 + L1ME4a LINE L1 5965 6105 -16 2072 103 7 10 chr4 4257496 4257796 -198070551 + AluSx SINE Alu 1 299 -13 351 0 0 0 chr4 4257825 4257864 -198070483 + (GA)n Simple_repeat Simple_repeat 1 39 0 244 277 12 12 chr4 4257870 4257953 -198070394 + L1ME LINE L1 5741 5823 -298 1763 168 3 0 chr4 4257991 4258300 -198070047 - AluJo SINE Alu -2 310 1 243 305 84 0 chr4 4258521 4258616 -198069731 - MER112 DNA MER1_type -131 129 27 1969 69 76 4 chr4 4258803 4259079 -198069268 + AluY SINE Alu 1 296 -15 1480 181 0 22 chr4 4259133 4259448 -198068899 - AluJo SINE Alu -1 311 4 221 224 94 47 chr4 4259543 4259628 -198068719 - MIR3 SINE MIR -7 201 113 * 430 294 87 0 chr4 4259612 4259738 -198068609 + MIR SINE MIR 28 164 -98 2091 117 0 0 chr4 4259740 4260060 -198068287 + AluSg SINE Alu 1 320 0 456 19 0 0 chr4 4260061 4260114 -198068233 + (CA)n Simple_repeat Simple_repeat 2 54 0 515 233 57 62 chr4 4260272 4260448 -198067899 - MIR3 SINE MIR -4 204 30 615 274 65 47 chr4 4261701 4261978 -198066369 + MLT1L LTR MaLR 201 482 -133 187 248 22 146 chr4 4261980 4262117 -198066230 - MIR SINE MIR -141 121 2 213 39 0 0 chr4 4263314 4263340 -198065007 + (TG)n Simple_repeat Simple_repeat 1 26 0 2176 94 3 10 chr4 4263348 4263655 -198064692 - AluSg SINE Alu -5 305 1 281 297 94 23 chr4 4263887 4264015 -198064332 + MER34B LTR ERV1 23 159 -406 553 261 42 50 chr4 4264127 4264368 -198063979 + MER34B LTR ERV1 324 562 -3 225 109 0 109 chr4 4264369 4264415 -198063932 - MIR SINE MIR -115 147 107 260 279 38 0 chr4 4264883 4264962 -198063385 + MER117 DNA MER1_type 59 140 -57 423 280 143 23 chr4 4265281 4265456 -198062891 + MIR SINE MIR 57 252 -10 189 293 35 0 chr4 4265467 4265525 -198062822 - L2 LINE L2 0 3272 3213 235 306 42 0 chr4 4265558 4265630 -198062717 - MIR SINE MIR -10 252 178 397 281 169 47 chr4 4265813 4266133 -198062214 + L1ME4a LINE L1 5747 6105 -16 3059 151 27 23 chr4 4266138 4266322 -198062025 + L1MB2 LINE L1 5606 5788 -383 2559 112 112 109 chr4 4266322 4266984 -198061363 - MER4A LTR ERV1 0 664 1 3059 151 27 23 chr4 4266984 4267363 -198060984 + L1MB2 LINE L1 5788 6171 0 302 328 25 8 chr4 4268035 4268157 -198060190 + L2 LINE L2 2670 2793 -521 668 303 78 18 chr4 4268161 4268379 -198059968 - MIR SINE MIR -9 253 23 1892 176 37 29 chr4 4268904 4269122 -198059225 - MLT1B LTR MaLR -11 379 155 2019 130 7 0 chr4 4269122 4269421 -198058926 + AluSq SINE Alu 1 301 -12 1892 176 37 29 chr4 4269421 4269578 -198058769 - MLT1B LTR MaLR -235 155 1 510 313 72 15 chr4 4269697 4269962 -198058385 - MARNA DNA Mariner -230 356 77 230 271 0 0 chr4 4269973 4270021 -198058326 + MIR SINE MIR 86 133 -75 760 176 0 61 chr4 4270026 4270191 -198058156 + L1MA9 LINE L1 5814 5968 -344 872 163 17 22 chr4 4270191 4270369 -198057978 + FRAM SINE Alu 1 176 0 1393 190 57 10 chr4 4270375 4270675 -198057672 + L1MA9 LINE L1 5959 6272 -40 545 217 34 63 chr4 4270958 4271133 -198057214 + L1MB8 LINE L1 6004 6173 -5 1878 218 35 2 chr4 4271665 4272097 -198056250 + L1MB3 LINE L1 4829 5274 -872 1329 166 16 4 chr4 4272096 4272343 -198056004 - L1MB3 LINE L1 -235 5948 5699 * 4521 157 37 37 chr4 4272344 4272381 -198055966 + L1MB3 LINE L1 5263 5299 -884 1896 132 3 3 chr4 4272381 4272670 -198055677 + AluSq SINE Alu 1 289 -24 4521 157 37 37 chr4 4272670 4273551 -198054796 + L1MB3 LINE L1 5298 6181 -2 546 120 0 0 chr4 4273575 4273650 -198054697 + AluJ/FLAM SINE Alu 3 77 -235 22 56 0 0 chr4 4273673 4273709 -198054638 + AT_rich Low_complexity Low_complexity 1 36 0 248 304 76 0 chr4 4273742 4273821 -198054526 + L2 LINE L2 3168 3252 -20 1973 108 11 3 chr4 4273953 4274240 -198054107 + AluSp SINE Alu 1 289 -24 392 182 3 85 chr4 4274245 4274366 -198053981 + L1MD3 LINE L1 7660 7789 -206 1917 141 0 16 chr4 4274366 4274672 -198053675 - AluSx SINE Alu -11 301 1 392 182 3 85 chr4 4274672 4274691 -198053656 + L1MD3 LINE L1 7789 7995 0 1014 199 16 0 chr4 4275444 4275630 -198052717 - MER5A DNA MER1_type 0 189 1 230 328 0 0 chr4 4275758 4275819 -198052528 - L2 LINE L2 -2 3311 3251 326 292 76 7 chr4 4275901 4276045 -198052302 + HAL1b LINE L1 397 550 -798 723 240 35 58 chr4 4276072 4276330 -198052017 - L2 LINE L2 -4 3309 3058 2122 115 0 0 chr4 4276683 4276979 -198051368 + AluSx SINE Alu 1 296 -16 2022 122 3 3 chr4 4277219 4277515 -198050832 + AluSq SINE Alu 1 296 -17 611 271 101 95 chr4 4277561 4277994 -198050353 + L1MEc LINE L1 2105 2489 -3726 2232 52 21 7 chr4 4277994 4278283 -198050064 + AluY SINE Alu 2 294 -17 611 271 101 95 chr4 4278283 4278327 -198050020 + L1MEc LINE L1 2489 2531 -3684 243 170 0 0 chr4 4278345 4278392 -198049955 + (TA)n Simple_repeat Simple_repeat 1 47 0 226 292 0 0 chr4 4278393 4278482 -198049865 - L1MC4 LINE L1 -1340 6702 6614 302 341 0 0 chr4 4278482 4278564 -198049783 + L1MC4 LINE L1 6622 6703 -1339 * 382 272 0 22 chr4 4278516 4278608 -198049739 - L1MC4 LINE L1 -1339 6703 6614 * 394 300 0 0 chr4 4278576 4278666 -198049681 + L1MC4 LINE L1 6614 6703 -1339 837 121 0 0 chr4 4278667 4278791 -198049556 - AluSp/q SINE Alu -14 299 176 346 327 119 0 chr4 4278837 4279005 -198049342 + L1MEc LINE L1 2627 2814 -3401 795 226 40 32 chr4 4279007 4279239 -198049108 + MIR SINE MIR 23 261 -1 382 340 47 0 chr4 4279417 4279567 -198048780 - L3 LINE CR1 -15 1562 1406 938 116 0 0 chr4 4279580 4279785 -198048562 - AluSx SINE Alu 0 356 152 1062 159 0 53 chr4 4279788 4280014 -198048333 + AluJo SINE Alu 97 310 -2 259 286 132 22 chr4 4280204 4280295 -198048052 + L2 LINE L2 3164 3264 -49 1123 75 20 0 chr4 4280327 4280474 -198047873 - AluSx SINE Alu -162 150 1 210 118 0 0 chr4 4280569 4280603 -198047744 + (TCCA)n Simple_repeat Simple_repeat 1 34 0 470 304 120 0 chr4 4280614 4280805 -198047542 - L2 LINE L2 0 3313 3100 185 244 0 0 chr4 4281065 4281106 -198047241 - L3 LINE CR1 -582 995 955 214 310 86 52 chr4 4281117 4281291 -198047056 - L3 LINE CR1 -1133 444 265 199 239 0 22 chr4 4281531 4281577 -198046770 - MIR SINE MIR -63 145 101 332 278 18 71 chr4 4281741 4281910 -198046437 + L2 LINE L2 2305 2464 -850 360 64 0 0 chr4 4281945 4281992 -198046355 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 282 56 0 0 chr4 4282109 4282145 -198046202 + (GGAGAA)n Simple_repeat Simple_repeat 5 40 0 1870 119 44 10 chr4 4282164 4282459 -198045888 + AluSx SINE Alu 1 305 -7 210 145 0 48 chr4 4282469 4282531 -198045816 + (GGGAGA)n Simple_repeat Simple_repeat 3 61 0 * 310 200 24 41 chr4 4282525 4282613 -198045734 + GA-rich Low_complexity Low_complexity 1 86 -81 2267 102 0 0 chr4 4282613 4282918 -198045429 + AluSg SINE Alu 1 305 -5 310 200 24 41 chr4 4282918 4282999 -198045348 + GA-rich Low_complexity Low_complexity 86 167 0 292 227 19 143 chr4 4283509 4283664 -198044683 - MIR SINE MIR -44 164 28 1518 190 13 3 chr4 4283825 4284125 -198044222 + AluJo SINE Alu 1 303 -9 220 240 29 29 chr4 4285806 4285910 -198042437 + (CCCG)n Simple_repeat Simple_repeat 2 105 0 562 204 68 34 chr4 4286726 4286873 -198041474 + MER45A DNA AcHobo 27 178 0 300 257 83 76 chr4 4286962 4287106 -198041241 - L2 LINE L2 0 3313 3169 198 0 0 0 chr4 4287298 4287320 -198041027 + (TTTC)n Simple_repeat Simple_repeat 2 23 0 1610 155 7 40 chr4 4287322 4287626 -198040721 - AluJo SINE Alu -18 294 1 506 240 154 0 chr4 4287761 4287936 -198040411 + MLT1J1 LTR MaLR 238 439 -7 1870 112 14 11 chr4 4288046 4288331 -198040016 - AluSg SINE Alu -24 286 1 1880 93 17 42 chr4 4288426 4288715 -198039632 + AluSx SINE Alu 21 302 -10 5418 50 19 0 chr4 4289063 4289738 -198038609 - L1PA5 LINE L1 0 6154 5467 1551 118 0 65 chr4 4289920 4290242 -198038105 - AluSg SINE Alu -9 301 1 1796 237 24 26 chr4 4290245 4290713 -198037634 - MLT1C LTR MaLR 0 467 1 2674 142 19 54 chr4 4290721 4290846 -198037501 + L1MA8 LINE L1 5719 5847 -444 1666 159 3 41 chr4 4290846 4290990 -198037357 + AluJb SINE Alu 1 149 -163 1976 78 103 4 chr4 4290990 4291271 -198037076 + AluSp SINE Alu 2 310 -3 1666 159 3 41 chr4 4291271 4291441 -198036906 + AluJb SINE Alu 149 303 -9 2674 142 19 54 chr4 4291441 4291836 -198036511 + L1MA8 LINE L1 5847 6221 -70 7558 111 54 11 chr4 4291841 4292997 -198035350 - HSMAR2 DNA Mariner -5 1297 93 309 262 123 41 chr4 4293510 4293632 -198034715 - MIR SINE MIR -7 255 124 760 129 313 0 chr4 4293637 4293784 -198034563 - MER46A DNA MER2_type 0 236 44 198 274 39 0 chr4 4293806 4293857 -198034490 - MIR SINE MIR -165 97 45 23 0 0 0 chr4 4294114 4294137 -198034210 + AT_rich Low_complexity Low_complexity 1 23 0 873 136 8 0 chr4 4294712 4294844 -198033503 + FLAM_A SINE Alu 1 133 0 212 331 58 52 chr4 4295035 4295207 -198033140 - L2 LINE L2 -3061 253 81 1131 183 0 24 chr4 4296008 4296221 -198032126 + AluJo SINE Alu 85 292 -20 1817 146 3 13 chr4 4297319 4297620 -198030727 + AluJb SINE Alu 1 298 -14 375 297 65 7 chr4 4297628 4297783 -198030564 + L1ME4a LINE L1 5956 6119 -2 357 282 35 7 chr4 4297872 4298014 -198030333 + L1MC4a LINE L1 5753 5898 -1910 892 253 80 118 chr4 4298019 4298655 -198029692 + L1ME3A LINE L1 5559 6170 0 2085 107 3 28 chr4 4299362 4299680 -198028667 + AluSp SINE Alu 1 310 -3 544 276 144 0 chr4 4300240 4300414 -198027933 + MIR SINE MIR 13 211 -51 2018 119 3 19 chr4 4300462 4300774 -198027573 - AluSx SINE Alu -5 307 1 380 201 166 14 chr4 4300881 4301020 -198027327 + MER106B DNA MER1_type 865 1024 -35 292 43 109 0 chr4 4301013 4301059 -198027288 - MER106A DNA MER1_type -13 223 173 * 2207 98 0 0 chr4 4301090 4301385 -198026962 - AluSq SINE Alu -18 295 1 226 271 224 28 chr4 4301431 4301538 -198026809 - MER5B DNA MER1_type 0 178 51 2362 45 0 10 chr4 4301657 4301948 -198026399 - AluY SINE Alu -23 288 1 193 294 0 0 chr4 4302326 4302377 -198025970 + MIR SINE MIR 59 109 -99 1847 131 13 23 chr4 4302760 4303065 -198025282 + AluJb SINE Alu 1 302 -10 516 126 0 0 chr4 4304244 4304331 -198024016 - L1MA9 LINE L1 0 6312 6226 1147 135 53 55 chr4 4304342 4304632 -198023715 - L1MA9 LINE L1 -15 6285 6007 191 175 79 79 chr4 4304636 4304699 -198023648 + L2 LINE L2 3202 3264 -8 2039 77 0 58 chr4 4305320 4305630 -198022717 - AluSg SINE Alu -18 292 1 286 236 89 102 chr4 4305672 4305829 -198022518 + MIR3 SINE MIR 36 190 -18 362 279 127 35 chr4 4306263 4306460 -198021887 - L1MC/D LINE L1 -2018 5790 5576 300 266 65 81 chr4 4307582 4307706 -198020641 - L2 LINE L2 -14 3258 3137 181 200 25 0 chr4 4307749 4307789 -198020558 - L2 LINE L2 -1 3271 3231 2033 106 23 0 chr4 4308078 4308381 -198019966 + AluSg SINE Alu 1 310 0 186 103 0 0 chr4 4308503 4308532 -198019815 + (T)n Simple_repeat Simple_repeat 1 29 0 2050 114 3 43 chr4 4308958 4309282 -198019065 + AluSq SINE Alu 1 311 -2 326 289 250 19 chr4 4309426 4309634 -198018713 + MIR SINE MIR 7 262 0 921 253 37 17 chr4 4310226 4310467 -198017880 + MIR SINE MIR 17 262 0 22 0 0 0 chr4 4310505 4310527 -198017820 + AT_rich Low_complexity Low_complexity 1 22 0 363 169 26 39 chr4 4310639 4310716 -198017631 + MIR SINE MIR 187 262 0 1403 80 0 50 chr4 4310887 4311088 -198017259 - AluSc SINE Alu -12 297 107 2625 36 0 0 chr4 4311089 4311398 -198016949 - AluY SINE Alu -2 309 1 312 240 69 98 chr4 4311398 4311602 -198016745 - L1MC/D LINE L1 -515 5606 5409 3098 77 47 12 chr4 4312041 4312433 -198015914 + MLT2A1 LTR ERVL 1 411 -33 441 95 0 0 chr4 4312433 4312496 -198015851 + (TA)n Simple_repeat Simple_repeat 1 63 0 3098 77 47 12 chr4 4312496 4312532 -198015815 + MLT2A1 LTR ERVL 411 444 0 779 161 0 0 chr4 4312575 4312693 -198015654 + FLAM_C SINE Alu 1 118 -15 198 103 0 0 chr4 4312696 4312725 -198015622 + (TAA)n Simple_repeat Simple_repeat 3 31 0 275 311 19 0 chr4 4312896 4313002 -198015345 + LTR16C LTR ERVL 17 124 -367 2155 168 73 36 chr4 4313840 4314281 -198014066 - LTR32 LTR ERVL 0 471 15 632 253 104 22 chr4 4314284 4314466 -198013881 + MIR SINE MIR 47 243 -19 380 264 11 0 chr4 4314679 4314766 -198013581 - MIR SINE MIR -60 202 115 2172 107 0 0 chr4 4315042 4315340 -198013007 + AluSx SINE Alu 1 298 -14 648 174 0 3 chr4 4315340 4315455 -198012892 - LTR18A LTR ERVL -6 351 248 703 291 61 5 chr4 4315608 4315804 -198012543 - LTR18A LTR ERVL -147 210 4 398 272 48 48 chr4 4315917 4316064 -198012283 - MER117 DNA MER1_type -49 148 2 3973 99 5 0 chr4 4316281 4316836 -198011511 + L1PA10 LINE L1 5611 6168 0 2116 113 7 0 chr4 4316924 4317234 -198011113 + AluSp SINE Alu 2 313 0 2231 100 7 0 chr4 4317427 4317737 -198010610 + AluSx SINE Alu 1 312 0 285 291 75 15 chr4 4318921 4319055 -198009292 + L1ME3A LINE L1 5524 5665 -497 225 0 0 0 chr4 4319139 4319164 -198009183 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2097 100 0 0 chr4 4319164 4319444 -198008903 - AluSx SINE Alu -32 280 1 1648 152 0 55 chr4 4319444 4319754 -198008593 - AluJo SINE Alu -14 298 6 554 219 34 0 chr4 4319783 4319902 -198008445 + L1ME3A LINE L1 5850 5972 -198 245 189 344 0 chr4 4319909 4319999 -198008348 + L1ME3A LINE L1 6042 6162 -8 210 289 0 106 chr4 4320375 4320479 -198007868 - MIR SINE MIR -132 130 38 197 33 33 0 chr4 4320958 4320988 -198007359 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1534 133 47 36 chr4 4320990 4321268 -198007079 - AluJo SINE Alu -23 289 9 2373 74 0 3 chr4 4321336 4321648 -198006699 + AluY SINE Alu 1 311 0 2092 92 3 3 chr4 4322410 4322750 -198005597 - AluSp SINE Alu 0 340 1 2142 117 10 0 chr4 4323046 4323355 -198004992 - AluSx SINE Alu 0 312 1 2465 102 36 28 chr4 4324318 4324679 -198003668 + THE1B LTR MaLR 1 364 0 336 298 258 25 chr4 4324974 4325172 -198003175 - MIR SINE MIR -9 253 10 1875 124 34 0 chr4 4325894 4326185 -198002162 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr4 4327248 4327269 -198001078 + AT_rich Low_complexity Low_complexity 1 21 0 2284 198 77 73 chr4 4327652 4328409 -197999938 + L1MD1 LINE L1 14 5423 -1117 732 190 28 0 chr4 4328423 4328565 -197999782 + L1MA9 LINE L1 6108 6253 -59 1414 178 69 4 chr4 4328565 4328841 -197999506 + AluJo SINE Alu 1 294 -18 180 0 0 0 chr4 4328897 4328917 -197999430 + (A)n Simple_repeat Simple_repeat 1 20 0 3777 191 51 72 chr4 4328937 4329510 -197998837 + L1MD1 LINE L1 5437 6020 -616 5536 101 25 6 chr4 4329510 4330313 -197998034 - L1MA2 LINE L1 0 6304 5487 3777 191 51 72 chr4 4330313 4330950 -197997397 + L1MD1 LINE L1 6020 6628 -8 1445 125 32 39 chr4 4330974 4331255 -197997092 - Tigger7 DNA MER2_type 0 2487 2209 557 163 0 0 chr4 4331263 4331349 -197996998 - Tigger7 DNA MER2_type -387 163 78 535 236 0 0 chr4 4332072 4332182 -197996165 - FRAM SINE Alu -67 109 1 2068 122 0 0 chr4 4332583 4332887 -197995460 + AluSx SINE Alu 1 304 -8 182 204 0 19 chr4 4333225 4333279 -197995068 + CT-rich Low_complexity Low_complexity 3 55 0 504 309 52 14 chr4 4333748 4333960 -197994387 + MIR SINE MIR 21 248 -14 906 188 14 29 chr4 4334078 4334286 -197994061 - AluJb SINE Alu -9 303 99 2140 110 0 0 chr4 4334350 4334640 -197993707 - AluSx SINE Alu -22 290 1 195 264 75 0 chr4 4334868 4334921 -197993426 + MIR SINE MIR 50 106 -156 1001 90 0 0 chr4 4335075 4335209 -197993138 + AluSp/q SINE Alu 171 304 -9 2079 114 0 3 chr4 4335220 4335517 -197992830 + AluSx SINE Alu 1 296 -16 2091 112 0 0 chr4 4335705 4335990 -197992357 - AluSx SINE Alu -24 288 4 180 332 127 9 chr4 4336189 4336418 -197991929 + L2 LINE L2 2999 3254 -59 235 200 52 13 chr4 4337255 4337370 -197990977 + L2 LINE L2 3101 3272 0 * 486 265 15 22 chr4 4337369 4337505 -197990842 - MIR SINE MIR -108 154 20 1877 137 3 29 chr4 4337689 4338002 -197990345 + AluSx SINE Alu 1 305 -7 2885 179 39 20 chr4 4338549 4339193 -197989154 + L1 LINE L1 4104 4759 -1387 2020 95 51 3 chr4 4339971 4340267 -197988080 - AluSg SINE Alu 0 310 1 2043 93 0 0 chr4 4341827 4342097 -197986250 - AluSg SINE Alu -40 270 1 1065 221 55 0 chr4 4342618 4342835 -197985512 - MIR SINE MIR -3 259 31 2326 63 3 16 chr4 4345295 4345610 -197982737 - AluY SINE Alu 0 311 1 299 267 110 20 chr4 4346195 4346341 -197982006 - MIR SINE MIR -60 202 44 195 297 144 8 chr4 4346742 4346860 -197981487 + MIR SINE MIR 79 212 -50 2223 111 0 0 chr4 4347136 4347443 -197980904 - AluSx SINE Alu -5 307 1 264 291 36 45 chr4 4347572 4347682 -197980665 + MIR3 SINE MIR 85 193 -15 306 244 39 0 chr4 4347806 4347884 -197980463 - MIR SINE MIR -70 192 112 249 197 14 113 chr4 4347948 4348019 -197980328 - L2 LINE L2 -20 3252 3189 653 253 96 35 chr4 4348117 4348346 -197980001 - MIR SINE MIR -8 254 12 454 143 220 0 chr4 4348438 4348529 -197979818 + MER81 DNA DNA 4 114 0 553 260 33 20 chr4 4349464 4349614 -197978733 + MIR SINE MIR 108 259 -3 302 211 14 56 chr4 4349612 4349683 -197978664 + L2 LINE L2 3246 3313 0 * 1877 140 31 63 chr4 4349800 4350151 -197978196 - MLT1B LTR MaLR 0 390 51 208 290 122 19 chr4 4350377 4350484 -197977863 + L2 LINE L2 2965 3082 -190 882 97 0 62 chr4 4350505 4350649 -197977698 + AluSc SINE Alu 1 135 -174 1962 122 0 26 chr4 4350650 4350953 -197977394 + AluSx SINE Alu 4 298 -14 354 282 154 26 chr4 4350979 4351096 -197977251 + L2 LINE L2 3139 3270 -2 359 155 19 126 chr4 4351668 4351771 -197976576 - MIR3 SINE MIR -5 203 112 443 289 10 0 chr4 4351773 4351877 -197976470 - L2 LINE L2 -2 3270 3166 294 172 11 151 chr4 4352087 4352180 -197976167 + MIR SINE MIR 11 90 -172 929 241 49 0 chr4 4352194 4352397 -197975950 - MLT1H1 LTR MaLR 0 555 343 539 292 82 18 chr4 4352438 4352657 -197975690 - MLT1H1 LTR MaLR -316 239 7 581 177 161 0 chr4 4352665 4352789 -197975558 + MIR SINE MIR 118 261 -1 1956 123 7 0 chr4 4353027 4353311 -197975036 - AluSx SINE Alu -26 286 1 465 19 0 0 chr4 4353529 4353583 -197974764 + (TG)n Simple_repeat Simple_repeat 2 55 0 520 304 117 26 chr4 4353607 4353784 -197974563 + MIR SINE MIR 6 210 -52 1748 146 80 50 chr4 4353784 4354148 -197974199 - THE1C LTR MaLR 0 375 1 520 304 117 26 chr4 4354148 4354200 -197974147 + MIR SINE MIR 210 256 -6 2306 126 27 36 chr4 4354965 4355330 -197973017 + THE1B LTR MaLR 3 364 0 2150 113 3 0 chr4 4355724 4356035 -197972312 - AluSx SINE Alu 0 312 1 1570 188 41 3 chr4 4356168 4356460 -197971887 + AluJo SINE Alu 1 303 -9 342 250 86 17 chr4 4356595 4356711 -197971636 + MER5A DNA MER1_type 38 161 -28 396 255 301 0 chr4 4356720 4356873 -197971474 - MIR SINE MIR -15 247 49 1816 149 3 14 chr4 4357095 4357384 -197970963 - AluJb SINE Alu -21 291 6 375 220 120 10 chr4 4357566 4357666 -197970681 + L2 LINE L2 3171 3281 -32 438 247 320 1 chr4 4357712 4357952 -197970395 + L2 LINE L2 2745 3045 -268 22 0 0 0 chr4 4358166 4358188 -197970159 + AT_rich Low_complexity Low_complexity 1 22 0 690 190 71 11 chr4 4358248 4358409 -197969938 - MER3 DNA MER1_type -65 144 5 378 0 0 0 chr4 4358437 4358479 -197969868 + (TG)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chr4 4359262 4359287 -197969060 + AT_rich Low_complexity Low_complexity 1 25 0 922 140 0 0 chr4 4359323 4359466 -197968881 + FRAM SINE Alu 22 164 -12 249 140 0 0 chr4 4362395 4362452 -197965895 + (TC)n Simple_repeat Simple_repeat 2 58 0 2120 99 27 0 chr4 4362896 4363189 -197965158 - AluSx SINE Alu -11 301 1 732 241 141 0 chr4 4363338 4363529 -197964818 + Charlie1 DNA MER1_type 2 219 -2542 732 190 36 0 chr4 4363523 4363660 -197964687 + Charlie1 DNA MER1_type 2620 2761 0 42 20 0 0 chr4 4363815 4363864 -197964483 + AT_rich Low_complexity Low_complexity 1 49 0 213 290 43 0 chr4 4365343 4365412 -197962935 - L2 LINE L2 0 3272 3201 883 226 49 25 chr4 4366032 4366275 -197962072 + MIR SINE MIR 2 250 -12 309 248 34 39 chr4 4366427 4366530 -197961817 + MIR SINE MIR 87 191 -62 417 206 46 122 chr4 4366685 4366753 -197961594 - MER5B DNA MER1_type -55 123 51 207 0 0 0 chr4 4366753 4366776 -197961571 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2006 104 0 4 chr4 4366778 4367057 -197961290 - AluSg SINE Alu -32 278 1 417 206 46 122 chr4 4367057 4367116 -197961231 - MER5B DNA MER1_type -128 50 3 197 311 22 11 chr4 4368188 4368278 -197960069 + L3 LINE CR1 1268 1358 -219 503 308 92 25 chr4 4368938 4369178 -197959169 + MIR SINE MIR 7 262 0 2347 65 0 32 chr4 4369192 4369502 -197958845 - AluY SINE Alu -11 300 1 245 167 0 0 chr4 4372479 4372521 -197955826 + MER94 DNA DNA 70 111 -23 255 330 126 10 chr4 4372572 4372675 -197955672 - L2 LINE L2 -2 3270 3156 2040 129 0 3 chr4 4373053 4373362 -197954985 - AluSx SINE Alu -4 308 1 385 304 50 12 chr4 4373491 4373652 -197954695 + MIR SINE MIR 90 256 -6 289 363 40 0 chr4 4374810 4374934 -197953413 - L2 LINE L2 -3 3269 3141 769 143 75 8 chr4 4375589 4375722 -197952625 + AluSg/x SINE Alu 144 285 -27 1394 180 54 14 chr4 4376012 4376306 -197952041 - L1MB7 LINE L1 -9 6175 5870 309 194 16 0 chr4 4376311 4376373 -197951974 - L1MB7 LINE L1 -473 5705 5643 2091 107 30 3 chr4 4377024 4377324 -197951023 + AluSx SINE Alu 1 308 -4 1811 152 16 10 chr4 4377573 4377883 -197950464 - AluJo SINE Alu 0 312 1 1563 147 15 4 chr4 4378229 4378488 -197949859 + AluSx SINE Alu 1 262 -50 1571 117 0 25 chr4 4378494 4378733 -197949614 + AluSq SINE Alu 29 261 -52 842 168 173 11 chr4 4379130 4379309 -197949038 + AluJo SINE Alu 85 292 -20 195 293 103 60 chr4 4380602 4380718 -197947629 + MIR SINE MIR 31 151 -111 683 279 202 70 chr4 4381575 4381657 -197946690 + L2 LINE L2 1334 1404 -1910 1998 116 36 0 chr4 4381657 4381958 -197946389 + AluSx SINE Alu 1 312 0 683 279 202 70 chr4 4381958 4382164 -197946183 + L2 LINE L2 1404 1581 -1733 936 118 0 22 chr4 4382164 4382300 -197946047 - FLAM_C SINE Alu 0 133 1 683 279 202 70 chr4 4382300 4382795 -197945552 + L2 LINE L2 1581 2009 -1305 3304 136 84 4 chr4 4382795 4383332 -197945015 + LTR19B LTR ERV1 1 580 0 683 279 202 70 chr4 4383332 4383551 -197944796 + L2 LINE L2 2009 2471 -843 1920 130 24 0 chr4 4383723 4384016 -197944331 + AluSg SINE Alu 1 300 -10 246 337 74 0 chr4 4384282 4384377 -197943970 + MIR SINE MIR 38 139 -69 186 259 0 56 chr4 4384528 4384582 -197943765 - MIR3 SINE MIR -7 201 151 301 289 141 15 chr4 4384600 4384735 -197943612 - MER5A DNA MER1_type -29 160 9 189 226 226 0 chr4 4384743 4384796 -197943551 - MIR3 SINE MIR -48 160 96 461 287 71 10 chr4 4384804 4385004 -197943343 - MIR SINE MIR 0 262 48 1523 168 10 24 chr4 4385178 4385469 -197942878 - AluJb SINE Alu -25 287 1 859 133 0 0 chr4 4385479 4385607 -197942740 - FLAM_C SINE Alu -15 128 1 216 0 0 0 chr4 4385834 4385858 -197942489 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1956 53 3 86 chr4 4385861 4386164 -197942183 - AluY SINE Alu -32 279 2 830 174 25 0 chr4 4386808 4386969 -197941378 + L1MB7 LINE L1 5910 6074 -110 1029 214 68 80 chr4 4386969 4387306 -197941041 + MLT1B LTR MaLR 1 359 -108 1431 191 37 0 chr4 4387306 4387578 -197940769 - AluJo SINE Alu -30 282 1 1029 214 68 80 chr4 4387578 4387683 -197940664 + MLT1B LTR MaLR 359 464 -3 677 153 0 0 chr4 4387683 4387794 -197940553 + L1MB4 LINE L1 6067 6177 -3 210 186 0 47 chr4 4387809 4387852 -197940495 + MIR SINE MIR 154 194 -68 1233 116 0 0 chr4 4388033 4388206 -197940141 - AluSg/x SINE Alu -7 305 133 319 248 152 16 chr4 4388357 4388482 -197939865 + MIR SINE MIR 85 226 -36 282 363 18 9 chr4 4388531 4388644 -197939703 + L2 LINE L2 3197 3310 -3 2357 176 19 26 chr4 4388740 4389141 -197939206 + MLT1C LTR MaLR 1 400 -67 2326 75 0 0 chr4 4389141 4389435 -197938912 - AluY SINE Alu -17 294 1 2357 176 19 26 chr4 4389435 4389500 -197938847 + MLT1C LTR MaLR 400 464 -3 804 203 49 93 chr4 4390486 4390732 -197937615 + MLT1B LTR MaLR 1 235 -155 * 1310 194 113 76 chr4 4390731 4390907 -197937440 + MLT1C LTR MaLR 18 186 -281 1485 181 41 0 chr4 4390907 4391178 -197937169 - AluJo SINE Alu -28 284 3 1310 194 113 76 chr4 4391178 4391435 -197936912 + MLT1C LTR MaLR 186 467 0 1852 139 31 0 chr4 4391723 4392011 -197936336 + AluSq SINE Alu 1 297 -16 225 281 31 0 chr4 4392319 4392383 -197935964 + MIR SINE MIR 65 130 -78 1769 126 7 25 chr4 4392417 4392703 -197935644 + AluJb SINE Alu 7 287 -25 765 221 0 54 chr4 4393235 4393421 -197934926 + L1M3 LINE L1 5429 5596 -575 7168 102 18 11 chr4 4393426 4394426 -197933921 - LTR13 LTR ERVK 0 1007 1 2196 119 0 0 chr4 4394451 4394762 -197933585 + AluSx SINE Alu 1 311 -1 1383 93 31 0 chr4 4394800 4394994 -197933353 + AluSq SINE Alu 1 200 -113 25 51 0 0 chr4 4395001 4395040 -197933307 + AT_rich Low_complexity Low_complexity 1 39 0 1403 145 0 0 chr4 4395076 4395290 -197933057 - AluSg/x SINE Alu -16 296 83 451 226 0 0 chr4 4395495 4395579 -197932768 - PABL_B-int LTR ERV1 -449 6673 6590 1948 179 21 6 chr4 4395582 4395912 -197932435 + LTR32 LTR ERVL 14 348 -123 2128 112 3 0 chr4 4395915 4396211 -197932136 - AluSp SINE Alu -16 297 1 810 172 26 13 chr4 4396234 4396385 -197931962 + LTR32 LTR ERVL 319 471 0 690 335 37 41 chr4 4396451 4396964 -197931383 - PABL_B-int LTR ERV1 -598 6524 6014 2253 101 0 0 chr4 4397037 4397345 -197931002 + AluSg SINE Alu 1 308 -2 557 215 178 0 chr4 4397345 4397592 -197930755 + LTR23-int LTR ERV1 2089 2379 -2744 2656 202 88 102 chr4 4397612 4397648 -197930699 + LTR23-int LTR ERV1 3421 3456 -2490 2107 107 0 7 chr4 4397648 4397947 -197930400 + AluSx SINE Alu 1 297 -15 2656 202 88 102 chr4 4397947 4398915 -197929432 + LTR23-int LTR ERV1 3456 4410 -1536 1389 273 37 24 chr4 4399026 4399241 -197929106 + MLT1D LTR MaLR 35 246 -259 2253 116 0 0 chr4 4399241 4399551 -197928796 + AluSx SINE Alu 1 310 -2 1389 273 37 24 chr4 4399551 4399800 -197928547 + MLT1D LTR MaLR 246 505 0 655 295 127 45 chr4 4399800 4400262 -197928085 - MLT1J LTR MaLR -7 504 5 2012 130 0 13 chr4 4400503 4400859 -197927488 - AluSx SINE Alu 0 352 1 1614 127 15 8 chr4 4401229 4401488 -197926859 - MER2 DNA MER2_type -63 282 22 1037 291 158 38 chr4 4401490 4402638 -197925709 + L2 LINE L2 2006 3308 -5 225 250 19 0 chr4 4402638 4402690 -197925657 + GA-rich Low_complexity Low_complexity 1 53 0 1542 246 99 43 chr4 4402742 4403255 -197925092 + MLT1H1 LTR MaLR 14 555 0 281 265 20 20 chr4 4403256 4403358 -197924989 + L2 LINE L2 2291 2392 -922 1441 196 68 0 chr4 4403474 4403795 -197924552 + L1MB3 LINE L1 5839 6181 -2 21 26 0 26 chr4 4404625 4404642 -197923705 + AT_rich Low_complexity Low_complexity 1 17 -21 2111 122 0 3 chr4 4404642 4404929 -197923418 + AluSx SINE Alu 1 286 -26 21 26 0 26 chr4 4404929 4404950 -197923397 + AT_rich Low_complexity Low_complexity 17 38 0 237 284 95 14 chr4 4405087 4405161 -197923186 + L2 LINE L2 3188 3267 -5 326 302 93 61 chr4 4405652 4406079 -197922268 + L2 LINE L2 2553 3008 -264 241 105 0 0 chr4 4406167 4406205 -197922142 + MLT1J2 LTR MaLR 72 109 -341 412 331 49 23 chr4 4406225 4406491 -197921856 + MLT1J LTR MaLR 237 509 -2 324 298 65 24 chr4 4406610 4406734 -197921613 + L2 LINE L2 3136 3264 -8 2274 154 16 34 chr4 4406815 4406878 -197921469 + L1PA16 LINE L1 5724 5787 -379 1936 134 10 58 chr4 4406878 4407006 -197921341 + AluJo SINE Alu 6 139 -173 2226 108 0 17 chr4 4407006 4407301 -197921046 + AluSq SINE Alu 1 290 -23 1936 134 10 58 chr4 4407301 4407485 -197920862 + AluJo SINE Alu 139 303 -9 2274 154 16 34 chr4 4407485 4407869 -197920478 + L1PA16 LINE L1 5787 6163 -3 191 88 29 0 chr4 4409107 4409141 -197919206 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 464 283 7 0 chr4 4409160 4409305 -197919042 + L1ME4a LINE L1 5965 6110 -11 2264 122 3 0 chr4 4409645 4409956 -197918391 + AluSx SINE Alu 1 312 0 2180 126 27 36 chr4 4410350 4410715 -197917632 - THE1B LTR MaLR 0 364 3 218 318 148 34 chr4 4411481 4411533 -197916814 - MIR SINE MIR -6 256 211 1591 154 80 50 chr4 4411533 4411897 -197916450 + THE1C LTR MaLR 1 375 0 218 318 148 34 chr4 4411897 4412020 -197916327 - MIR SINE MIR -51 211 61 2345 101 55 71 chr4 4412572 4412629 -197915718 + MSTC LTR MaLR 1 57 -371 832 139 16 0 chr4 4412629 4412758 -197915589 + FLAM_C SINE Alu 3 133 0 2345 101 55 71 chr4 4412758 4413135 -197915212 + MSTC LTR MaLR 57 428 0 871 196 15 35 chr4 4413431 4413630 -197914717 + MLT1D LTR MaLR 41 235 -270 208 250 18 18 chr4 4413679 4413735 -197914612 - L2 LINE L2 -97 3216 3161 236 130 22 0 chr4 4414064 4414110 -197914237 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 2092 116 0 75 chr4 4414292 4414627 -197913720 - AluSx SINE Alu -2 310 1 2347 113 0 10 chr4 4414732 4415042 -197913305 - AluSx SINE Alu -5 307 1 688 138 9 0 chr4 4415055 4415164 -197913183 - AluJb SINE Alu -12 300 191 225 336 34 48 chr4 4415304 4415451 -197912896 - MER5A DNA MER1_type -28 161 6 269 301 32 0 chr4 4415500 4415593 -197912754 - MER5A DNA MER1_type -84 105 10 1974 121 69 0 chr4 4415655 4415945 -197912402 - AluSg SINE Alu 0 310 1 263 167 0 0 chr4 4415961 4416003 -197912344 - 5S rRNA rRNA -79 42 1 373 213 56 9 chr4 4416082 4416190 -197912157 - MIR SINE MIR -107 155 43 1911 67 14 25 chr4 4416302 4416585 -197911762 - L1PA7 LINE L1 -1 6153 5874 516 275 24 35 chr4 4416586 4416784 -197911563 - MIR SINE MIR -62 146 2 900 238 67 18 chr4 4416818 4417100 -197911247 - MLT1C LTR MaLR 0 467 172 841 152 22 0 chr4 4417149 4417287 -197911060 - AluJo SINE Alu -171 141 1 2308 99 3 0 chr4 4417299 4417591 -197910756 - AluSx SINE Alu -19 293 1 1090 99 0 0 chr4 4417633 4417795 -197910552 + L1PB2 LINE L1 5990 6151 0 482 287 78 62 chr4 4417988 4418246 -197910101 + L1ME LINE L1 5514 5775 -346 996 179 25 0 chr4 4418449 4418645 -197909702 + LTR48B LTR ERV1 1 201 -443 1703 124 24 3 chr4 4418646 4418937 -197909410 - LTR23 LTR ERV1 0 437 141 2149 115 0 0 chr4 4418940 4419219 -197909128 - AluSg SINE Alu -1 309 31 5380 61 103 0 chr4 4419219 4419968 -197908379 - LTR12 LTR ERV1 0 826 1 249 88 0 0 chr4 4419968 4420002 -197908345 - AluSg SINE Alu -269 34 1 569 184 82 54 chr4 4420005 4420152 -197908195 - LTR23 LTR ERV1 -286 151 1 495 216 9 26 chr4 4420273 4420389 -197907958 - LTR23-int LTR ERV1 -223 4900 4787 5128 147 28 14 chr4 4420403 4421417 -197906930 - LTR49-int LTR ERV1 -478 6120 4608 2608 41 0 0 chr4 4421423 4421716 -197906631 + AluY SINE Alu 1 293 -18 1421 113 5 0 chr4 4421817 4422003 -197906344 - AluSg SINE Alu -123 187 1 832 209 83 7 chr4 4422004 4422462 -197905885 + L1MA9 LINE L1 5661 6183 0 2161 209 36 53 chr4 4422485 4422501 -197905846 - MER92B LTR ERV1 -4 632 617 2443 82 7 0 chr4 4422501 4422795 -197905552 + AluSq SINE Alu 1 296 -17 2161 209 36 53 chr4 4422795 4423420 -197904927 - MER92B LTR ERV1 -19 617 2 202 270 11 34 chr4 4423533 4423622 -197904725 - L2 LINE L2 -188 3084 2998 323 183 11 75 chr4 4423727 4423820 -197904527 - LTR33A LTR ERVL -11 512 426 308 237 67 30 chr4 4425073 4425208 -197903139 - MER65B LTR ERV1 -391 140 1 267 236 28 0 chr4 4425286 4425358 -197902989 + MIR SINE MIR 111 184 -78 229 237 75 32 chr4 4425485 4425578 -197902769 + L2 LINE L2 3136 3232 -40 2370 99 0 7 chr4 4425862 4426166 -197902181 + AluSx SINE Alu 1 302 -10 450 143 48 0 chr4 4426360 4426444 -197901903 - AluS SINE Alu 0 309 222 820 255 50 50 chr4 4476931 4477521 -197850826 + L1ME LINE L1 678 1257 -4823 1058 235 65 0 chr4 4477631 4477891 -197850456 - MLT1-int LTR MaLR -139 1232 956 2194 221 4 6 chr4 4478289 4478764 -197849583 - MLT1-int LTR MaLR -1075 660 187 309 309 43 25 chr4 4479068 4479230 -197849117 - L1M4 LINE L1 -5336 1206 1042 633 216 14 7 chr4 4479693 4479832 -197848515 + MLT1A1 LTR MaLR 225 364 -1 577 142 53 18 chr4 4479834 4479947 -197848400 + MLT1A1-int LTR MaLR 2 118 -1617 2164 134 0 15 chr4 4480225 4480567 -197847780 - MER1B DNA MER1_type 0 337 1 446 233 200 30 chr4 4480645 4480945 -197847402 - L1MEc LINE L1 -4418 1978 1628 989 106 0 73 chr4 4480957 4481136 -197847211 + MLT2A2 LTR ERVL 1 166 -287 890 122 0 0 chr4 4481137 4481252 -197847095 - AluSq/x SINE Alu -197 115 1 259 241 13 25 chr4 4481254 4481333 -197847014 + LTR52 LTR ERVL 16 93 -328 * 648 175 0 17 chr4 4481329 4481449 -197846898 - MLT1A1 LTR MaLR -247 118 1 6724 75 26 5 chr4 4482299 4483260 -197845087 - L1PA11 LINE L1 -1 6173 5209 21 71 0 0 chr4 4483359 4483401 -197844946 + AT_rich Low_complexity Low_complexity 1 42 0 612 270 10 99 chr4 4483413 4483706 -197844641 - L2 LINE L2 -161 3152 2886 407 296 0 74 chr4 4483710 4483872 -197844475 - L2 LINE L2 -985 2329 2180 3607 53 2 0 chr4 4484235 4484708 -197843639 + L1PA8 LINE L1 5467 5940 -232 1673 166 54 11 chr4 4485213 4485491 -197842856 - AluJb SINE Alu -22 290 1 284 276 38 0 chr4 4485494 4485599 -197842748 + L1M4 LINE L1 2749 2857 -3289 1184 306 15 11 chr4 4485608 4486076 -197842271 + L1ME3A LINE L1 5696 6165 -5 905 248 35 13 chr4 4486105 4486335 -197842012 + MIR SINE MIR 10 244 -18 2830 201 55 16 chr4 4486413 4487090 -197841257 + L1MD2 LINE L1 5630 6332 -27 404 306 121 25 chr4 4487091 4487290 -197841057 + MIR SINE MIR 34 251 -11 333 0 0 0 chr4 4487461 4487498 -197840849 + (TG)n Simple_repeat Simple_repeat 2 38 0 181 49 0 73 chr4 4487889 4487930 -197840417 + (TTTTTG)n Simple_repeat Simple_repeat 6 43 0 229 265 61 31 chr4 4488004 4488102 -197840245 + MER5A DNA MER1_type 4 104 -85 390 290 28 7 chr4 4488146 4488291 -197840056 - MIR3 SINE MIR -48 160 13 262 50 0 25 chr4 4488532 4488572 -197839775 + MIR SINE MIR 102 140 -122 399 250 31 55 chr4 4488860 4488988 -197839359 - MIR3 SINE MIR -15 193 69 378 147 29 0 chr4 4488991 4489059 -197839288 + MLT1A2 LTR MaLR 1 70 -304 1708 80 0 24 chr4 4489159 4489408 -197838939 + L1PA8 LINE L1 5930 6172 0 438 20 0 0 chr4 4489931 4489982 -197838365 + (TG)n Simple_repeat Simple_repeat 1 51 0 1001 143 62 85 chr4 4490094 4490318 -197838029 - MER20 DNA MER1_type 0 219 1 280 350 39 56 chr4 4492764 4492944 -197835403 - L2 LINE L2 -2 3270 3094 25 31 0 0 chr4 4493379 4493411 -197834936 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr4 4494919 4494947 -197833400 + AT_rich Low_complexity Low_complexity 1 28 0 2428 82 7 0 chr4 4495983 4496288 -197832059 - AluSg SINE Alu -3 307 1 22 0 0 0 chr4 4500857 4500879 -197827468 + AT_rich Low_complexity Low_complexity 1 22 0 464 188 354 11 chr4 4501191 4501372 -197826975 - MIR SINE MIR -10 252 10 515 295 181 54 chr4 4501452 4502049 -197826298 + L2 LINE L2 2077 2749 -565 355 391 31 65 chr4 4502067 4502389 -197825958 + L2 LINE L2 2962 3272 0 648 321 66 45 chr4 4502511 4503028 -197825319 + MLT1K LTR MaLR 40 567 -21 225 0 0 0 chr4 4503164 4503189 -197825158 + (GAAAA)n Simple_repeat Simple_repeat 4 28 0 555 260 103 18 chr4 4503365 4503588 -197824759 + L3b LINE CR1 1161 1402 -181 328 296 51 0 chr4 4503711 4503809 -197824538 - L2 LINE L2 -1 3271 3169 771 179 8 22 chr4 4504899 4505033 -197823314 + FLAM_A SINE Alu 1 132 -1 423 187 0 0 chr4 4505985 4506092 -197822255 + (TA)n Simple_repeat Simple_repeat 1 107 0 458 227 9 9 chr4 4506367 4506477 -197821870 - LTR33 LTR ERVL -343 178 69 2200 137 38 11 chr4 4506477 4506850 -197821497 + MSTB LTR MaLR 44 426 0 462 259 83 19 chr4 4506886 4507091 -197821256 + LTR16A LTR ERVL 59 276 -174 2196 89 31 0 chr4 4507292 4507585 -197820762 + AluY SINE Alu 1 302 -9 235 244 110 37 chr4 4507972 4508054 -197820293 + MIR SINE MIR 175 262 0 412 226 124 0 chr4 4508358 4508495 -197819852 - L1ME4a LINE L1 0 6121 5968 31 0 0 0 chr4 4508586 4508617 -197819730 + AT_rich Low_complexity Low_complexity 1 31 0 1608 180 0 4 chr4 4508861 4509117 -197819230 - AluSx SINE Alu -57 255 1 334 272 123 31 chr4 4509167 4509329 -197819018 - L1 LINE L1 -1088 5058 4882 216 0 0 0 chr4 4509363 4509387 -197818960 + (CA)n Simple_repeat Simple_repeat 2 25 0 322 334 127 23 chr4 4509431 4509730 -197818617 - L1 LINE L1 -1517 4629 4300 324 338 44 19 chr4 4510144 4510304 -197818043 + L1MC4a LINE L1 5708 5871 -1937 181 73 24 24 chr4 4510654 4510695 -197817652 + (CAAAAA)n Simple_repeat Simple_repeat 3 43 0 494 270 0 0 chr4 4510819 4510934 -197817413 - MIR3 SINE MIR -28 180 66 189 329 14 0 chr4 4511667 4511737 -197816610 + MIR SINE MIR 180 250 -12 917 216 72 0 chr4 4512936 4513144 -197815203 - MER58A DNA MER1_type -1 223 1 205 191 143 0 chr4 4513449 4513491 -197814856 + L2 LINE L2 3219 3266 -6 203 203 0 109 chr4 4514387 4514451 -197813896 - MIR3 SINE MIR 0 208 152 1140 250 192 5 chr4 4514482 4514940 -197813407 - L2 LINE L2 0 3313 2770 185 254 164 15 chr4 4516123 4516190 -197812157 - L3 LINE CR1 -132 1445 1369 581 311 77 56 chr4 4516197 4516275 -197812072 - L3 LINE CR1 -322 1255 1180 2360 73 0 13 chr4 4516275 4516575 -197811772 - AluSc SINE Alu -13 296 1 581 311 77 56 chr4 4516575 4516872 -197811475 - L3 LINE CR1 -397 1180 872 260 309 147 29 chr4 4517069 4517273 -197811074 - L3 LINE CR1 -1089 488 261 490 326 70 11 chr4 4517518 4517705 -197810642 + MIR SINE MIR 47 244 -18 600 264 106 22 chr4 4518885 4519112 -197809235 - MIR SINE MIR 0 262 17 418 259 280 16 chr4 4519775 4519968 -197808379 - MIR SINE MIR -1 261 18 197 250 21 0 chr4 4520267 4520315 -197808032 + L2 LINE L2 3186 3234 -38 972 104 0 15 chr4 4521804 4521962 -197806385 - FLAM_C SINE Alu 0 156 1 313 300 70 0 chr4 4526662 4526762 -197801585 + MIR3 SINE MIR 78 184 -24 261 284 74 0 chr4 4526916 4526997 -197801350 - MIR SINE MIR -71 191 105 293 191 0 0 chr4 4527394 4527441 -197800906 - MER5B DNA MER1_type -131 47 1 789 227 104 5 chr4 4527459 4527679 -197800668 + MIR SINE MIR 13 254 -8 1232 179 25 68 chr4 4527791 4528070 -197800277 - AluJo SINE Alu -2 310 44 188 259 138 0 chr4 4528537 4528595 -197799752 - MIR3 SINE MIR -52 156 91 703 264 24 81 chr4 4529903 4530149 -197798198 - MIR SINE MIR -29 233 2 345 298 12 0 chr4 4530855 4530939 -197797408 + L2 LINE L2 3229 3313 0 211 353 35 0 chr4 4531251 4531336 -197797011 + L3b LINE CR1 1422 1509 -74 1646 175 42 18 chr4 4532681 4533012 -197795335 - MER2 DNA MER2_type -3 341 3 550 240 56 56 chr4 4533028 4533166 -197795181 - L1ME4a LINE L1 -198 5923 5783 2154 116 0 7 chr4 4533166 4533476 -197794871 + AluSq SINE Alu 1 308 -5 550 240 56 56 chr4 4533476 4533570 -197794777 - L1ME4a LINE L1 -337 5784 5691 420 221 0 12 chr4 4533925 4534011 -197794336 + MIR3 SINE MIR 117 201 -7 180 258 0 65 chr4 4535023 4535085 -197793262 - L2 LINE L2 -60 3212 3155 361 300 61 40 chr4 4535085 4535362 -197792985 + Charlie2 DNA MER1_type 1 283 -2499 2713 224 76 35 chr4 4535390 4535986 -197792361 + Charlie2 DNA MER1_type 1852 2505 -357 563 95 21 0 chr4 4535986 4536081 -197792266 + L1PB2 LINE L1 6053 6149 -2 2713 224 76 35 chr4 4536081 4536455 -197791892 + Charlie2 DNA MER1_type 2505 2862 0 189 333 49 31 chr4 4536549 4536732 -197791615 - L2 LINE L2 -313 2959 2701 381 259 45 18 chr4 4536792 4536904 -197791443 - L2 LINE L2 0 3272 3158 1262 187 68 3 chr4 4536950 4537300 -197791047 + L1MD2 LINE L1 5211 5577 -751 1258 126 40 20 chr4 4537321 4537568 -197790779 - L1MB8 LINE L1 -5 6173 5922 2026 140 35 85 chr4 4537573 4537912 -197790435 - MER47B DNA MER2_type -1910 413 99 1950 124 16 29 chr4 4537912 4538219 -197790128 + AluSx SINE Alu 5 307 -5 2026 140 35 85 chr4 4538219 4538314 -197790033 - MER47B DNA MER2_type -2224 99 1 1249 137 39 13 chr4 4538314 4538548 -197789799 - L1MB8 LINE L1 -261 5923 5684 * 1432 234 63 0 chr4 4538546 4539013 -197789334 + L1MD2 LINE L1 5579 6080 -86 1357 105 79 31 chr4 4539042 4539359 -197788988 - Tigger7 DNA MER2_type -34 2553 1 437 198 143 0 chr4 4539575 4539666 -197788681 + Tigger5 DNA MER2_type 132 235 -2088 2446 64 0 0 chr4 4540110 4540408 -197787939 - AluY SINE Alu -13 298 1 828 124 25 8 chr4 4540409 4540530 -197787817 - AluJb SINE Alu -178 134 12 4008 138 46 32 chr4 4540541 4541052 -197787295 - L1MB3 LINE L1 -42 6141 5614 2053 146 36 33 chr4 4541052 4541415 -197786932 + THE1B LTR MaLR 1 364 0 4008 138 46 32 chr4 4541415 4541710 -197786637 - L1MB3 LINE L1 -569 5614 5324 1411 107 20 0 chr4 4541762 4541958 -197786389 - AluSq SINE Alu -113 200 1 583 242 152 51 chr4 4542397 4542806 -197785541 + MLT1J2 LTR MaLR 1 450 0 213 203 0 68 chr4 4542937 4542996 -197785351 - L2 LINE L2 -82 3190 3136 256 271 26 56 chr4 4543074 4543225 -197785122 + MIR SINE MIR 8 156 -67 2433 99 0 0 chr4 4543457 4543769 -197784578 - AluSx SINE Alu 0 312 1 263 325 73 14 chr4 4543799 4543941 -197784406 - MIR SINE MIR -62 146 1 1099 296 69 11 chr4 4544067 4544503 -197783844 + L2 LINE L2 2853 3313 0 2355 36 11 0 chr4 4544602 4544878 -197783469 + AluY SINE Alu 31 309 -2 2148 123 0 37 chr4 4545266 4545554 -197782793 + AluSq SINE Alu 1 277 -36 180 0 0 0 chr4 4545554 4545574 -197782773 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2148 123 0 37 chr4 4545574 4545610 -197782737 + AluSq SINE Alu 277 313 0 2390 67 0 3 chr4 4546013 4546312 -197782035 - AluY SINE Alu -13 298 1 1958 153 3 7 chr4 4546606 4546906 -197781441 - AluJb SINE Alu -11 301 3 401 306 14 27 chr4 4547034 4547181 -197781166 - MIR SINE MIR -3 259 115 223 304 89 60 chr4 4547271 4547439 -197780908 - L2 LINE L2 -184 3088 2916 274 243 27 14 chr4 4547533 4547607 -197780740 + MIR SINE MIR 88 153 -55 1886 172 33 32 chr4 4547607 4548154 -197780193 - MLT2A2 LTR ERVL 0 554 4 601 203 209 89 chr4 4548529 4548844 -197779503 - MLT1J1 LTR MaLR -23 427 74 3957 205 22 54 chr4 4548908 4549297 -197779050 + L1MB7 LINE L1 4362 4762 -1422 1195 160 84 0 chr4 4549297 4549535 -197778812 + L1MB3 LINE L1 5923 6180 -3 3957 205 22 54 chr4 4549535 4549721 -197778626 + L1MB7 LINE L1 4762 4952 -1232 4285 65 0 7 chr4 4549721 4550275 -197778072 - L1PA13 LINE L1 -2 6161 5612 3957 205 22 54 chr4 4550275 4550708 -197777639 + L1MB7 LINE L1 4952 5397 -787 2160 108 3 0 chr4 4550708 4551003 -197777344 + AluSp SINE Alu 1 296 -17 3957 205 22 54 chr4 4551003 4551360 -197776987 + L1MB7 LINE L1 5397 5764 -420 2642 139 27 2 chr4 4551360 4551771 -197776576 - MSTB LTR MaLR -1 425 5 3957 205 22 54 chr4 4551771 4552287 -197776060 + L1MB7 LINE L1 5764 6184 0 314 246 89 73 chr4 4552335 4552562 -197775785 - L2 LINE L2 -186 3086 2856 263 241 51 25 chr4 4552685 4552764 -197775583 + L2 LINE L2 3146 3226 -46 561 286 85 5 chr4 4553766 4553955 -197774392 - MIR SINE MIR -57 205 2 299 250 0 0 chr4 4553960 4554032 -197774315 + MER81 DNA DNA 1 72 -42 1602 150 40 44 chr4 4554043 4554176 -197774171 + AluJo SINE Alu 1 133 -179 2365 104 0 0 chr4 4554176 4554474 -197773873 + AluSx SINE Alu 1 298 -14 1602 150 40 44 chr4 4554474 4554614 -197773733 + AluJo SINE Alu 133 273 -39 1805 154 129 7 chr4 4554726 4555126 -197773221 + MLT1D LTR MaLR 26 467 0 295 330 76 0 chr4 4555502 4555620 -197772727 - L2 LINE L2 0 3272 3146 620 266 107 64 chr4 4555621 4555833 -197772514 + Charlie7 DNA MER1_type 1 202 -2410 2027 118 81 35 chr4 4555833 4556181 -197772166 + THE1B LTR MaLR 1 364 0 620 266 107 64 chr4 4556181 4556499 -197771848 + Charlie7 DNA MER1_type 202 554 -2058 192 77 0 0 chr4 4556516 4556542 -197771805 + (GA)n Simple_repeat Simple_repeat 2 27 0 1843 159 7 3 chr4 4556797 4557117 -197771230 - AluJb SINE Alu 0 321 1 2197 138 52 6 chr4 4557162 4557510 -197770837 - THE1B LTR MaLR 0 364 1 822 231 7 0 chr4 4557512 4557659 -197770688 - FAM SINE Alu -36 149 2 314 200 91 0 chr4 4557660 4557770 -197770577 + Charlie7 DNA MER1_type 2453 2572 -40 227 227 0 30 chr4 4557961 4558027 -197770320 + MLT1J2 LTR MaLR 67 130 -320 850 249 121 55 chr4 4558029 4558548 -197769799 - MLT1G1 LTR MaLR -1 554 34 274 265 116 79 chr4 4558664 4558853 -197769494 + MLT1J LTR MaLR 310 505 -6 2064 101 0 8 chr4 4559151 4559418 -197768929 + AluSq SINE Alu 1 265 -48 1974 138 0 10 chr4 4559421 4559725 -197768622 + MLT1A1 LTR MaLR 65 365 0 593 261 43 68 chr4 4559733 4559967 -197768380 - MIR SINE MIR -29 233 6 389 312 12 58 chr4 4559966 4560139 -197768208 + MIR3 SINE MIR 40 204 -4 * 297 167 0 0 chr4 4560383 4560437 -197767910 + (CA)n Simple_repeat Simple_repeat 1 54 0 2365 115 0 0 chr4 4560803 4561115 -197767232 + AluSx SINE Alu 1 312 0 1137 258 79 25 chr4 4561331 4561398 -197766949 + MLT1L LTR MaLR 143 205 -410 2086 232 102 16 chr4 4561398 4561945 -197766402 + MLT1G1 LTR MaLR 2 595 0 1137 258 79 25 chr4 4561945 4562322 -197766025 + MLT1L LTR MaLR 205 611 -4 381 299 86 41 chr4 4562326 4562523 -197765824 - MIR SINE MIR -44 218 13 303 312 29 0 chr4 4562544 4562667 -197765680 + MIR SINE MIR 12 139 -69 1183 141 0 17 chr4 4563744 4563911 -197764436 - AluSg/x SINE Alu -12 300 135 2456 76 3 13 chr4 4563911 4564226 -197764121 - AluSq SINE Alu -1 312 1 2351 98 3 0 chr4 4564299 4564604 -197763743 - AluY SINE Alu -5 306 1 348 269 83 28 chr4 4564904 4565049 -197763298 + MIR SINE MIR 58 210 -52 233 279 135 29 chr4 4565398 4565502 -197762845 + MIR SINE MIR 67 181 -81 327 294 73 0 chr4 4565532 4565641 -197762706 + MIR SINE MIR 57 173 -89 577 254 29 35 chr4 4565837 4565978 -197762369 + MIR SINE MIR 31 172 -90 2297 105 0 7 chr4 4565978 4566304 -197762043 + AluSx SINE Alu 1 312 0 577 254 29 35 chr4 4566304 4566335 -197762012 + MIR SINE MIR 172 202 -60 327 260 0 0 chr4 4566578 4566655 -197761692 + L2 LINE L2 2981 3057 -215 210 369 29 0 chr4 4566876 4566979 -197761368 - MIR SINE MIR -91 171 66 647 277 66 31 chr4 4567218 4567536 -197760811 - L1MC4a LINE L1 -1922 5886 5558 2295 110 13 0 chr4 4567660 4567961 -197760386 - AluSx SINE Alu -7 305 1 216 290 32 0 chr4 4568032 4568094 -197760253 + MIR SINE MIR 81 144 -64 405 268 150 0 chr4 4568564 4568691 -197759656 - MIR SINE MIR 0 262 117 219 293 190 17 chr4 4569031 4569205 -197759142 - L2 LINE L2 -50 3222 3019 183 80 0 0 chr4 4569600 4569625 -197758722 + (A)n Simple_repeat Simple_repeat 1 25 0 673 276 98 19 chr4 4570398 4570612 -197757735 - MIR SINE MIR -3 259 29 1448 215 93 9 chr4 4570842 4571186 -197757161 - MLT1A2 LTR MaLR 0 374 2 690 297 67 5 chr4 4571286 4571481 -197756866 + MIR SINE MIR 50 256 -6 1749 137 96 0 chr4 4571491 4571761 -197756586 - AluJo SINE Alu -14 298 3 513 0 0 0 chr4 4571768 4571825 -197756522 + (TTA)n Simple_repeat Simple_repeat 3 59 0 1196 118 0 0 chr4 4571956 4572134 -197756213 - L1PA14 LINE L1 0 6161 5984 215 261 94 58 chr4 4572502 4572640 -197755707 + L2 LINE L2 2956 3098 -174 617 282 70 37 chr4 4572698 4572939 -197755408 + MIR SINE MIR 4 252 -10 325 232 0 14 chr4 4572983 4573052 -197755295 + L2 LINE L2 3242 3309 -4 208 269 30 0 chr4 4573526 4573593 -197754754 - MIR SINE MIR -7 255 187 1354 253 48 27 chr4 4573641 4573795 -197754552 + MLT1C LTR MaLR 17 166 -301 2181 118 0 6 chr4 4573795 4574108 -197754239 + AluSx SINE Alu 1 311 -1 1354 253 48 27 chr4 4574108 4574395 -197753952 + MLT1C LTR MaLR 166 467 0 1789 163 7 0 chr4 4575065 4575335 -197753012 + AluJo SINE Alu 33 304 -8 4799 128 55 3 chr4 4575585 4576325 -197752022 - MER4E LTR ERV1 0 779 1 1838 119 22 29 chr4 4576909 4577220 -197751127 + THE1B LTR MaLR 56 364 0 1159 202 175 19 chr4 4577220 4577591 -197750756 - MLT1C LTR MaLR -33 434 6 1476 208 140 20 chr4 4577807 4578206 -197750141 + MLT2B1 LTR ERVL 3 449 -71 25 51 0 0 chr4 4578227 4578266 -197750081 + AT_rich Low_complexity Low_complexity 1 39 0 325 265 12 0 chr4 4579095 4579178 -197749169 - MER81 DNA DNA -1 113 30 495 310 21 5 chr4 4579227 4579414 -197748933 - LTR16A LTR ERVL -104 346 157 376 195 114 57 chr4 4579421 4579620 -197748727 + MIR SINE MIR 44 259 -3 700 266 0 12 chr4 4579703 4579872 -197748475 - MIR SINE MIR 0 262 96 1813 179 0 28 chr4 4579921 4580294 -197748053 - AluJb SINE Alu 0 364 1 4272 191 12 21 chr4 4580360 4581247 -197747100 + L1MB5 LINE L1 5260 6138 -36 427 297 109 30 chr4 4581528 4581693 -197746654 + MER91A DNA MER1_type 1 178 -18 419 301 45 32 chr4 4582323 4582479 -197745868 + MIR3 SINE MIR 25 182 -26 542 180 0 0 chr4 4582598 4582698 -197745649 - L1M4 LINE L1 -463 5715 5616 2157 126 20 0 chr4 4582734 4583035 -197745312 - AluSq SINE Alu -6 307 1 2665 153 16 63 chr4 4583070 4583544 -197744803 - L1MB8 LINE L1 -17 6161 5717 2054 143 27 0 chr4 4583544 4583844 -197744503 + AluSx SINE Alu 1 308 -4 2665 153 16 63 chr4 4583844 4583939 -197744408 - L1MB8 LINE L1 -461 5717 5619 245 361 0 0 chr4 4583969 4584088 -197744259 - L2 LINE L2 -965 2349 2231 2089 224 38 19 chr4 4585062 4585589 -197742758 + MLT1F LTR MaLR 6 542 0 223 298 46 46 chr4 4586005 4586223 -197742124 - L2 LINE L2 -1108 2206 1989 959 224 0 0 chr4 4587549 4587719 -197740628 + MER5A DNA MER1_type 1 170 -19 1980 195 88 27 chr4 4587764 4588240 -197740107 + MLT1D LTR MaLR 1 505 0 244 280 37 19 chr4 4588385 4588492 -197739855 + LTR67 LTR ERVL 432 540 -17 558 257 11 73 chr4 4588563 4588673 -197739674 - MIR SINE MIR -17 245 149 3182 102 42 86 chr4 4588673 4589264 -197739083 - MER34B LTR ERV1 0 565 1 558 257 11 73 chr4 4589264 4589332 -197739015 - MIR SINE MIR -113 149 78 294 316 43 43 chr4 4589415 4589554 -197738793 + MIR SINE MIR 108 246 -16 434 301 3 7 chr4 4590326 4590460 -197737887 + MIR SINE MIR 17 150 -83 222 157 176 0 chr4 4590503 4590554 -197737793 - L2 LINE L2 -8 3305 3246 921 155 6 11 chr4 4590670 4590844 -197737503 + MLT1B LTR MaLR 1 173 -217 2343 99 16 0 chr4 4590848 4591151 -197737196 + AluSq SINE Alu 1 308 -5 2410 107 0 0 chr4 4591159 4591468 -197736879 + AluSq SINE Alu 1 309 -4 1350 187 38 29 chr4 4592381 4592697 -197735650 + MLT1A2 LTR MaLR 56 374 0 299 231 37 65 chr4 4593495 4593603 -197734744 + MIR SINE MIR 80 184 -78 482 162 20 10 chr4 4593653 4593752 -197734595 + MER96B DNA MER1_type? 32 131 -286 185 248 202 47 chr4 4593842 4593971 -197734376 + MIR SINE MIR 28 176 -86 215 240 73 62 chr4 4594360 4594456 -197733891 + MIR SINE MIR 133 229 -33 270 0 0 0 chr4 4595212 4595242 -197733105 + (TG)n Simple_repeat Simple_repeat 2 31 0 347 0 23 0 chr4 4595304 4595347 -197733000 + (TG)n Simple_repeat Simple_repeat 2 45 0 2864 78 16 3 chr4 4595598 4595968 -197732379 - THE1C LTR MaLR 0 375 1 395 254 60 8 chr4 4596096 4596230 -197732117 - LTR16A1 LTR ERVL -47 410 270 207 273 0 0 chr4 4596554 4596598 -197731749 + L2 LINE L2 3136 3179 -93 528 248 32 16 chr4 4596751 4596876 -197731471 + L2 LINE L2 3145 3271 -1 228 200 18 0 chr4 4597064 4597119 -197731228 - L2 LINE L2 -299 2973 2918 1792 128 134 15 chr4 4597440 4597775 -197730572 - THE1C LTR MaLR 0 375 1 2844 258 214 11 chr4 4598045 4599258 -197729089 + L1MC4 LINE L1 6446 7903 -139 341 118 0 0 chr4 4599352 4599403 -197728944 - MSTA LTR MaLR -376 52 2 803 294 124 13 chr4 4599596 4599956 -197728391 + L2 LINE L2 2738 3178 -135 2370 107 48 25 chr4 4599956 4600312 -197728035 + THE1B LTR MaLR 1 364 0 803 294 124 13 chr4 4600312 4600422 -197727925 + L2 LINE L2 3178 3274 -39 404 297 0 0 chr4 4600513 4600614 -197727733 - MIR SINE MIR -55 153 53 225 0 0 0 chr4 4600635 4600660 -197727687 + (CA)n Simple_repeat Simple_repeat 2 26 0 233 315 9 45 chr4 4600938 4601049 -197727298 - MER67B LTR ERV1 -500 161 55 568 275 40 29 chr4 4601301 4601538 -197726809 + MIR SINE MIR 2 247 -15 2289 105 3 0 chr4 4602171 4602467 -197725880 + AluSp SINE Alu 1 297 -16 358 292 62 0 chr4 4602546 4602642 -197725705 - L2 LINE L2 0 3313 3212 353 331 31 8 chr4 4602635 4602765 -197725582 + L2 LINE L2 2920 3052 -220 * 2958 128 27 2 chr4 4602837 4603321 -197725026 - L1MC2 LINE L1 -10 6334 5839 234 0 0 0 chr4 4603322 4603348 -197724999 + (T)n Simple_repeat Simple_repeat 1 26 0 320 272 19 19 chr4 4603410 4603513 -197724834 - LTR33 LTR ERVL -115 406 304 574 275 31 5 chr4 4603580 4603773 -197724574 - LTR33 LTR ERVL -323 198 1 383 198 207 18 chr4 4603775 4603886 -197724461 - MIR SINE MIR -58 204 73 2042 147 21 0 chr4 4603904 4604237 -197724110 - L1MC1 LINE L1 -480 5853 5514 217 227 18 172 chr4 4604701 4604864 -197723483 - L2 LINE L2 -81 3191 3054 246 261 161 97 chr4 4604882 4605231 -197723116 + MLT1I LTR MaLR 18 388 -21 301 275 14 56 chr4 4605510 4605652 -197722695 + MLT1L LTR MaLR 154 289 -326 296 282 68 8 chr4 4605924 4606041 -197722306 - MIR SINE MIR 0 262 139 270 0 0 0 chr4 4606361 4606391 -197721956 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2225 63 44 0 chr4 4606395 4606665 -197721682 - AluY SINE Alu -29 282 1 1617 191 11 46 chr4 4606904 4607270 -197721077 + L1PA16 LINE L1 5814 6166 0 204 40 0 0 chr4 4607732 4607757 -197720590 + (CA)n Simple_repeat Simple_repeat 2 26 0 626 310 103 42 chr4 4607792 4608240 -197720107 + L3 LINE CR1 733 1207 -370 215 351 44 18 chr4 4608238 4608334 -197720013 + L2 LINE L2 3155 3256 -16 * 1726 146 3 57 chr4 4608334 4608649 -197719698 + AluJo SINE Alu 1 298 -14 215 351 44 18 chr4 4608649 4608666 -197719681 + L2 LINE L2 3256 3271 -1 191 403 17 0 chr4 4608660 4608779 -197719568 + L3 LINE CR1 1385 1505 -72 * 2571 157 29 5 chr4 4608827 4609242 -197719105 + MER61B LTR ERV1 1 425 0 251 193 53 0 chr4 4609352 4609409 -197718938 + GA-rich Low_complexity Low_complexity 2 61 0 201 39 0 0 chr4 4609501 4609527 -197718820 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 215 268 138 65 chr4 4609558 4609681 -197718666 + L2 LINE L2 3169 3300 -13 219 69 0 0 chr4 4609681 4609710 -197718637 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 237 363 108 0 chr4 4610208 4610310 -197718037 + L2 LINE L2 3200 3312 -1 221 249 129 41 chr4 4610334 4610527 -197717820 - MIR SINE MIR -38 224 8 878 161 0 15 chr4 4610772 4610909 -197717438 + FRAM SINE Alu 20 154 -22 2164 114 7 0 chr4 4611868 4612177 -197716170 - AluSx SINE Alu 0 312 2 2248 96 0 20 chr4 4612190 4612491 -197715856 - AluSg SINE Alu -15 295 1 567 291 79 25 chr4 4612492 4612695 -197715652 + MIR SINE MIR 49 262 0 829 258 56 13 chr4 4614352 4614585 -197713762 - L3b LINE CR1 -159 1424 1182 328 277 178 50 chr4 4614855 4614913 -197713434 - MIR SINE MIR -28 234 185 2233 123 33 41 chr4 4614913 4615280 -197713067 + THE1B LTR MaLR 1 364 0 328 277 178 50 chr4 4615280 4615423 -197712924 - MIR SINE MIR -77 185 7 289 246 134 42 chr4 4615626 4615768 -197712579 + L2 LINE L2 3116 3270 -2 508 260 127 20 chr4 4615947 4616097 -197712250 + MIR3 SINE MIR 38 203 -5 2027 205 35 41 chr4 4616989 4617497 -197710850 + MLT1D LTR MaLR 1 505 0 2746 72 20 0 chr4 4617673 4618021 -197710326 - THE1A LTR MaLR 0 355 1 11780 95 16 1 chr4 4618021 4619578 -197708769 - THE1A-int LTR MaLR 0 1580 1 2896 71 3 0 chr4 4619578 4619932 -197708415 - THE1A LTR MaLR 0 355 1 466 180 128 10 chr4 4620334 4620455 -197707892 - MIR SINE MIR -65 143 28 351 0 0 0 chr4 4621196 4621235 -197707112 + (CA)n Simple_repeat Simple_repeat 1 39 0 1995 128 17 13 chr4 4621596 4621894 -197706453 - AluSx SINE Alu -12 300 2 1454 239 163 14 chr4 4622432 4622868 -197705479 - MLT1D LTR MaLR -4 501 1 2342 120 35 32 chr4 4622990 4623364 -197704983 - THE1C LTR MaLR 0 375 1 2365 105 0 31 chr4 4623514 4623870 -197704477 + AluSq SINE Alu 1 346 0 809 206 158 13 chr4 4624260 4624340 -197704007 - MLT1I LTR MaLR -3 406 339 3709 58 13 2 chr4 4624340 4624788 -197703559 + MLT2A2 LTR ERVL 1 453 0 809 206 158 13 chr4 4624788 4624935 -197703412 - MLT1I LTR MaLR -70 339 146 2372 148 2 15 chr4 4625042 4625440 -197702907 - Tigger2a DNA MER2_type -41 393 1 557 165 44 0 chr4 4625548 4625639 -197702708 + FAM SINE Alu 1 95 -90 2207 41 96 4 chr4 4626390 4626660 -197701687 + AluY SINE Alu 1 295 -16 515 184 72 0 chr4 4626734 4626859 -197701488 - Charlie1b DNA MER1_type 0 523 390 * 585 174 174 31 chr4 4626857 4627018 -197701329 - Charlie1b DNA MER1_type -262 261 78 964 156 17 6 chr4 4627136 4627309 -197701038 + FAM SINE Alu 1 175 0 306 354 76 0 chr4 4627561 4627705 -197700642 - MIR SINE MIR 0 262 108 221 340 31 10 chr4 4628652 4628749 -197699598 + L3 LINE CR1 1368 1466 -111 293 174 279 0 chr4 4629025 4629111 -197699236 + L2 LINE L2 3163 3272 0 243 338 42 0 chr4 4629117 4629188 -197699159 + L2 LINE L2 3134 3207 -65 606 195 113 1 chr4 4629195 4629354 -197698993 - MER69A DNA AcHobo 0 177 1 330 351 87 34 chr4 4629560 4629825 -197698522 - L2 LINE L2 -122 3150 2872 321 276 103 35 chr4 4629925 4630041 -197698306 + MIR SINE MIR 17 140 -68 387 299 28 0 chr4 4630453 4630560 -197697787 + L3 LINE CR1 1427 1536 -41 357 241 117 19 chr4 4631409 4631543 -197696804 + MIR SINE MIR 30 170 -65 323 279 112 39 chr4 4631861 4632040 -197696307 - MER117 DNA MER1_type 0 197 6 401 257 13 99 chr4 4632128 4632280 -197696067 - MIR3 SINE MIR -64 144 6 287 323 168 0 chr4 4632367 4632528 -197695819 + MIR SINE MIR 26 213 -49 361 300 27 0 chr4 4632529 4632639 -197695708 - MLT1K LTR MaLR -3 585 473 410 265 108 24 chr4 4633162 4633328 -197695019 + MIR3 SINE MIR 23 202 -6 21 0 0 0 chr4 4633968 4633989 -197694358 + AT_rich Low_complexity Low_complexity 1 21 0 2232 109 3 0 chr4 4634088 4634382 -197693965 + AluSp SINE Alu 1 295 -18 1336 167 31 108 chr4 4634503 4634637 -197693710 + MLT1A1 LTR MaLR 2 145 -220 2332 140 89 0 chr4 4634637 4635030 -197693317 - MSTA LTR MaLR 0 428 1 1336 167 31 108 chr4 4635030 4635285 -197693062 + MLT1A1 LTR MaLR 145 361 -4 223 294 168 25 chr4 4635455 4635574 -197692773 + MIR SINE MIR 29 164 -98 208 216 0 0 chr4 4635571 4635608 -197692739 + MIR SINE MIR 110 146 -62 * 378 200 56 11 chr4 4635615 4635705 -197692642 + MIR SINE MIR 99 192 -70 194 269 54 11 chr4 4636247 4636340 -197692007 - MIR3 SINE MIR -19 189 93 912 195 71 95 chr4 4636492 4636830 -197691517 + MLT1J LTR MaLR 45 374 -137 310 310 163 8 chr4 4636855 4636984 -197691363 - MIR SINE MIR -95 167 19 540 263 176 66 chr4 4637278 4637380 -197690967 + MLT1G1 LTR MaLR 3 92 -503 2193 125 3 0 chr4 4637380 4637677 -197690670 + AluSq SINE Alu 1 298 -15 540 263 176 66 chr4 4637677 4638107 -197690240 + MLT1G1 LTR MaLR 92 594 -1 612 139 9 26 chr4 4638941 4639056 -197689291 - L1MB7 LINE L1 -43 6141 6029 2148 135 3 13 chr4 4639066 4639241 -197689106 - AluSx SINE Alu -4 308 136 2055 133 7 7 chr4 4639241 4639541 -197688806 - AluSg1 SINE Alu -9 300 1 2148 135 3 13 chr4 4639541 4639676 -197688671 - AluSx SINE Alu -176 136 1 562 289 29 69 chr4 4639712 4639765 -197688582 - L1MC4a LINE L1 -1925 5883 5829 1898 171 0 13 chr4 4639765 4640074 -197688273 - AluJb SINE Alu -2 310 6 562 289 29 69 chr4 4640074 4640366 -197687981 - L1MC4a LINE L1 -1979 5829 5552 1096 216 103 23 chr4 4640585 4640962 -197687385 + MLT1J LTR MaLR 20 482 -29 288 250 99 24 chr4 4641057 4641292 -197687055 - L2 LINE L2 -22 3250 2935 701 96 36 2 chr4 4641770 4642021 -197686326 + AluSp SINE Alu 2 305 -8 361 322 70 74 chr4 4642299 4642758 -197685589 - L2 LINE L2 0 3272 2816 1477 231 58 14 chr4 4642964 4643392 -197684955 + MER39 LTR ERV1 261 707 0 1519 208 62 18 chr4 4643455 4643892 -197684455 - MLT1C LTR MaLR -4 463 8 290 179 218 0 chr4 4646224 4646302 -197682045 - MER5A DNA MER1_type -80 109 15 816 220 39 28 chr4 4646307 4646489 -197681858 - MER5A DNA MER1_type -5 184 1 322 312 24 16 chr4 4646640 4646765 -197681582 + L2 LINE L2 2944 3069 -203 498 216 89 10 chr4 4646926 4647064 -197681283 + MIR SINE MIR 54 206 -56 190 300 100 10 chr4 4647249 4647349 -197680998 - MIR SINE MIR -4 258 150 772 282 53 11 chr4 4647896 4648162 -197680185 + L2 LINE L2 3037 3313 0 4206 117 16 30 chr4 4648179 4648275 -197680072 + MER41B LTR ERV1 2 98 -537 2529 73 0 0 chr4 4648275 4648577 -197679770 - AluY SINE Alu -7 304 3 4206 117 16 30 chr4 4648577 4649123 -197679224 + MER41B LTR ERV1 98 635 0 350 297 21 41 chr4 4649291 4649436 -197678911 + MIR3 SINE MIR 3 144 -64 846 141 0 0 chr4 4649445 4649566 -197678781 + AluJb SINE Alu 3 123 -189 226 318 0 15 chr4 4650788 4650854 -197677493 - L2 LINE L2 -1 3271 3207 608 206 34 41 chr4 4651029 4651175 -197677172 + L2 LINE L2 3166 3310 -3 2362 64 0 7 chr4 4652207 4652503 -197675844 - AluSp SINE Alu -19 294 1 349 287 94 25 chr4 4652503 4652705 -197675642 - L1ME4a LINE L1 -294 5827 5612 481 51 51 25 chr4 4652713 4652733 -197675614 - Alu SINE Alu 0 310 292 2060 169 37 5 chr4 4652733 4653136 -197675211 - L1MB3 LINE L1 0 6183 5768 481 51 51 25 chr4 4653136 4653194 -197675153 - Alu SINE Alu -18 292 230 614 228 40 8 chr4 4653195 4653399 -197674948 - L1MB3 LINE L1 -381 5787 5503 356 261 8 0 chr4 4653530 4653649 -197674698 + (CCCA)n Simple_repeat Simple_repeat 3 122 0 955 137 11 0 chr4 4653702 4653877 -197674470 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 198 0 0 0 chr4 4655932 4655954 -197672393 + (A)n Simple_repeat Simple_repeat 1 22 0 1429 188 41 0 chr4 4657417 4657688 -197670659 + AluJo SINE Alu 1 282 -30 333 0 0 0 chr4 4657691 4657728 -197670619 + (CA)n Simple_repeat Simple_repeat 2 38 0 331 246 123 43 chr4 4657897 4658035 -197670312 - L2 LINE L2 -4 3309 3161 1316 94 0 85 chr4 4658088 4658312 -197670035 - AluSg/x SINE Alu -3 309 105 566 217 7 43 chr4 4658328 4658466 -197669881 - AluSq/x SINE Alu -179 133 1 21 36 0 0 chr4 4658625 4658653 -197669694 + AT_rich Low_complexity Low_complexity 1 28 0 940 88 7 36 chr4 4658684 4658821 -197669526 - AluSq/x SINE Alu -179 133 1 1159 254 43 40 chr4 4658827 4659197 -197669150 + MLT1I LTR MaLR 39 409 0 185 340 64 21 chr4 4659422 4659516 -197668831 + MIR SINE MIR 163 260 -2 660 270 56 9 chr4 4659520 4659716 -197668631 - MIR SINE MIR -30 232 34 294 219 20 137 chr4 4659859 4660005 -197668342 - MLT1H LTR MaLR 0 549 421 232 278 14 14 chr4 4660186 4660258 -197668089 - MIR SINE MIR -157 105 34 208 235 15 15 chr4 4660342 4660410 -197667937 + (CATA)n Simple_repeat Simple_repeat 3 70 0 746 188 0 8 chr4 4660749 4660922 -197667425 - FLAM_C SINE Alu 0 172 1 281 293 53 0 chr4 4660992 4661067 -197667280 + MIR SINE MIR 119 197 -65 267 256 131 22 chr4 4661075 4661090 -197667257 + MIR3 SINE MIR 23 35 -173 2256 171 5 3 chr4 4661090 4661477 -197666870 - MLT1B LTR MaLR -2 388 1 267 256 131 22 chr4 4661477 4661598 -197666749 + MIR3 SINE MIR 35 174 -34 773 162 0 22 chr4 4662022 4662158 -197666189 - FLAM_A SINE Alu 0 133 1 248 306 58 40 chr4 4662387 4662560 -197665787 - L1MC/D LINE L1 -1910 5898 5723 204 179 74 28 chr4 4662561 4662650 -197665697 + MIR SINE MIR 93 253 -9 440 204 78 0 chr4 4662955 4663058 -197665289 - L2 LINE L2 0 3272 3162 2258 98 0 3 chr4 4663103 4663408 -197664939 + AluSx SINE Alu 1 304 -8 2069 131 0 0 chr4 4663821 4664112 -197664235 - AluSx SINE Alu -21 291 1 310 283 131 0 chr4 4664570 4664669 -197663678 + L2 LINE L2 3161 3272 0 804 207 62 43 chr4 4665164 4665372 -197662975 - MIR SINE MIR 0 262 51 1496 179 7 18 chr4 4665372 4665652 -197662695 - MLT1B LTR MaLR 0 390 114 255 311 29 19 chr4 4665672 4665775 -197662572 + MIR SINE MIR 117 220 -42 257 274 105 88 chr4 4665961 4666257 -197662090 + L2 LINE L2 2972 3272 0 339 303 103 12 chr4 4666356 4666521 -197661826 - L1ME4a LINE L1 -3 6118 5939 354 285 43 65 chr4 4666548 4666734 -197661613 - L1ME4a LINE L1 -157 5964 5783 278 371 101 3 chr4 4667371 4667659 -197660688 + L2 LINE L2 2915 3230 -42 1750 162 3 19 chr4 4667892 4668206 -197660141 + AluJo SINE Alu 1 309 -3 1852 233 90 32 chr4 4668433 4668990 -197659357 + MLT1E LTR MaLR 5 593 0 2177 101 0 3 chr4 4669159 4669456 -197658891 + AluSc SINE Alu 1 296 -13 253 257 14 14 chr4 4669737 4669811 -197658536 + LTR33A LTR ERVL 448 521 -2 285 253 66 22 chr4 4669813 4669904 -197658443 - L2 LINE L2 -41 3231 3137 467 193 34 39 chr4 4669953 4670080 -197658267 + MER69 DNA AcHobo 1 2467 -59 2195 96 6 13 chr4 4670102 4670414 -197657933 - AluSx SINE Alu -2 310 1 250 171 0 0 chr4 4670441 4670482 -197657865 + MER69 DNA AcHobo 2478 2518 -8 1759 188 115 65 chr4 4670943 4671437 -197656910 - MLT2B1 LTR ERVL 0 520 2 1729 114 16 75 chr4 4671437 4671743 -197656604 + AluSx SINE Alu 1 288 -24 2026 137 3 0 chr4 4671831 4672131 -197656216 + AluSp SINE Alu 1 301 -12 1098 275 45 27 chr4 4672266 4672640 -197655707 - LTR16C LTR ERVL 0 491 111 250 377 72 7 chr4 4672910 4673048 -197655299 + MIR SINE MIR 47 193 -69 415 261 22 22 chr4 4673774 4673866 -197654481 - MIR SINE MIR -86 122 31 307 325 87 8 chr4 4674150 4674276 -197654071 + MIR3 SINE MIR 60 195 -13 1104 149 0 2 chr4 4674276 4674618 -197653729 + (TCCA)n Simple_repeat Simple_repeat 1 521 0 226 320 60 33 chr4 4674833 4674983 -197653364 - MIR SINE MIR -25 237 84 625 216 227 0 chr4 4675021 4675197 -197653150 + MIR SINE MIR 45 260 -2 242 299 35 0 chr4 4675974 4676061 -197652286 + MIR SINE MIR 49 138 -124 1100 63 8 8 chr4 4676392 4676632 -197651715 + (TCTA)n Simple_repeat Simple_repeat 1 240 0 1207 197 42 11 chr4 4676649 4676913 -197651434 - AluJo SINE Alu -40 272 1 312 339 27 49 chr4 4677846 4678029 -197650318 - MIR3 SINE MIR -21 187 9 239 272 59 81 chr4 4678300 4678436 -197649911 + MIR SINE MIR 72 204 -58 515 264 83 7 chr4 4678554 4678698 -197649649 - L2 LINE L2 0 3313 3159 720 284 175 9 chr4 4678719 4679050 -197649297 - L2 LINE L2 -385 2929 2544 2330 136 25 0 chr4 4679406 4679766 -197648581 - L1PB1 LINE L1 0 6151 5783 1759 77 0 4 chr4 4679868 4680101 -197648246 - L1PB1 LINE L1 -375 5776 5545 2120 86 48 7 chr4 4680113 4680404 -197647943 - AluY SINE Alu -7 304 2 843 273 71 47 chr4 4680460 4680841 -197647506 - L1MEd LINE L1 -5719 400 11 513 270 43 37 chr4 4680893 4681056 -197647291 + MER5A DNA MER1_type 26 189 0 407 173 2 2 chr4 4681197 4681277 -197647070 - MER58 DNA MER1_type 0 2420 262 1925 137 3 0 chr4 4681351 4681636 -197646711 + AluSx SINE Alu 1 286 -26 534 129 0 0 chr4 4681636 4681721 -197646626 + (GGGA)n Simple_repeat Simple_repeat 2 86 0 2473 114 31 14 chr4 4682196 4682554 -197645793 + THE1B LTR MaLR 1 364 0 215 349 24 12 chr4 4683303 4683386 -197644961 - MIR SINE MIR -109 99 16 852 138 20 40 chr4 4683388 4683540 -197644807 + MLT1C LTR MaLR 15 163 -304 800 189 0 0 chr4 4683540 4683672 -197644675 - FRAM SINE Alu -8 168 37 1240 207 50 40 chr4 4683672 4683702 -197644645 + MLT1C LTR MaLR 157 185 -282 632 206 16 40 chr4 4683702 4683828 -197644519 + FLAM_A SINE Alu 1 123 -10 1240 207 50 40 chr4 4683828 4684096 -197644251 + MLT1C LTR MaLR 185 458 -9 964 244 129 58 chr4 4684215 4684650 -197643697 + MLT1J LTR MaLR 5 470 -41 360 173 0 0 chr4 4684782 4684857 -197643490 - L1MA10 LINE L1 -2 6332 6258 367 250 78 9 chr4 4684865 4684981 -197643366 - LTR40a LTR ERVL -353 166 43 783 288 105 27 chr4 4685139 4685549 -197642798 - LTR33 LTR ERVL -68 453 12 700 148 62 0 chr4 4686073 4686201 -197642146 + L1PA16 LINE L1 6028 6163 -3 256 340 10 20 chr4 4686554 4686654 -197641693 - MER5A DNA MER1_type -35 154 56 706 202 136 84 chr4 4687481 4687931 -197640416 - HAL1 LINE L1 -1187 1320 848 183 410 26 26 chr4 4687956 4688112 -197640235 + L2 LINE L2 2606 2761 -553 306 330 39 0 chr4 4688336 4688439 -197639908 - MIR SINE MIR -109 153 47 287 296 204 0 chr4 4689247 4689355 -197638992 + MIR3 SINE MIR 68 197 -11 846 274 36 4 chr4 4689868 4690120 -197638227 + MIR SINE MIR 3 262 0 231 248 78 23 chr4 4690566 4690695 -197637652 + L1M4 LINE L1 2915 3050 -3096 562 324 47 28 chr4 4690704 4690917 -197637430 + LTR16A LTR ERVL 1 217 -233 1272 221 50 16 chr4 4691216 4691538 -197636809 - MER74B LTR ERVL -79 543 211 237 204 0 0 chr4 4691575 4691624 -197636723 - MER74B LTR ERVL -573 49 1 539 201 22 22 chr4 4691651 4691785 -197636562 + LTR16A LTR ERVL 252 385 -65 2085 164 22 8 chr4 4691841 4692201 -197636146 - MLT1A1 LTR MaLR 0 365 1 345 285 30 6 chr4 4692214 4692379 -197635968 + L1M4 LINE L1 3094 3262 -2884 548 217 0 9 chr4 4692388 4692503 -197635844 + FLAM_C SINE Alu 24 137 -6 24 0 0 0 chr4 4692885 4692909 -197635438 + AT_rich Low_complexity Low_complexity 1 24 0 1707 171 24 0 chr4 4692928 4693215 -197635132 - AluSx SINE Alu -18 294 1 301 305 96 48 chr4 4693229 4693416 -197634931 - MIR SINE MIR -18 244 49 1109 220 33 11 chr4 4693657 4693930 -197634417 - MLT1C LTR MaLR -1 466 188 389 321 36 22 chr4 4694150 4694287 -197634060 + MIR SINE MIR 6 144 -118 259 222 48 16 chr4 4694510 4694573 -197633774 - MLT1K LTR MaLR -15 573 509 1485 206 71 52 chr4 4694684 4695059 -197633288 + Charlie4a DNA MER1_type 23 410 -1551 2060 113 0 3 chr4 4695059 4695350 -197632997 - AluSx SINE Alu -22 290 1 1485 206 71 52 chr4 4695350 4695451 -197632896 + Charlie4a DNA MER1_type 410 508 0 313 261 67 25 chr4 4695627 4695746 -197632601 + LTR16C LTR ERVL 261 384 -107 192 345 93 22 chr4 4695970 4696109 -197632238 - L2 LINE L2 -26 3287 3139 214 307 34 11 chr4 4696299 4696387 -197631960 + L2 LINE L2 2966 3055 -217 748 286 110 14 chr4 4696927 4697291 -197631056 + LTR16C LTR ERVL 93 491 0 244 303 40 0 chr4 4697581 4697657 -197630690 + MIR3 SINE MIR 89 167 -41 259 267 35 47 chr4 4697702 4697788 -197630559 + MIR SINE MIR 99 183 -79 743 238 99 46 chr4 4697961 4698095 -197630252 + MLT1C LTR MaLR 7 132 -258 2263 173 52 2 chr4 4698095 4698500 -197629847 - MSTB LTR MaLR 0 426 2 743 238 99 46 chr4 4698500 4698733 -197629614 + MLT1C LTR MaLR 132 375 -15 862 222 0 0 chr4 4698871 4699033 -197629314 - MER45A DNA AcHobo 0 178 17 199 231 0 19 chr4 4699249 4699301 -197629046 - MIR SINE MIR -138 70 20 408 271 33 8 chr4 4699377 4699499 -197628848 + MIR SINE MIR 102 226 -36 207 0 0 0 chr4 4700251 4700274 -197628073 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1739 232 18 8 chr4 4700277 4700669 -197627678 - L1MC2 LINE L1 -9 6335 5940 231 200 0 0 chr4 4701078 4701118 -197627229 + CT-rich Low_complexity Low_complexity 2 41 0 327 265 39 88 chr4 4701488 4701692 -197626655 + L2 LINE L2 2332 2525 -789 2123 177 9 0 chr4 4701966 4702299 -197626048 - MER1B DNA MER1_type 0 337 2 299 310 9 78 chr4 4703002 4703118 -197625229 - MIR SINE MIR -109 153 46 290 286 229 0 chr4 4703241 4703346 -197625001 - MIR3 SINE MIR -13 195 67 298 268 159 36 chr4 4703832 4703970 -197624377 + MIR SINE MIR 65 219 -43 1775 213 2 45 chr4 4704319 4704350 -197623997 - MLT2D LTR ERVL -10 404 373 282 56 0 0 chr4 4704350 4704386 -197623961 + (TG)n Simple_repeat Simple_repeat 1 36 0 1775 213 2 45 chr4 4704386 4704776 -197623571 - MLT2D LTR ERVL -41 373 1 301 240 54 70 chr4 4705611 4705677 -197622670 - MIR SINE MIR -11 251 186 2540 151 44 2 chr4 4705677 4706088 -197622259 + MSTA LTR MaLR 1 428 0 301 240 54 70 chr4 4706088 4706150 -197622197 - MIR SINE MIR -76 186 125 417 52 17 0 chr4 4706150 4706208 -197622139 + MSTA LTR MaLR 370 428 0 357 234 75 0 chr4 4706216 4706310 -197622037 - MIR SINE MIR -77 185 85 22 35 0 0 chr4 4706836 4706865 -197621482 + AT_rich Low_complexity Low_complexity 1 29 0 315 291 91 0 chr4 4706947 4707057 -197621290 + MIR SINE MIR 75 194 -68 481 255 41 107 chr4 4707408 4707604 -197620743 + MIR SINE MIR 16 198 -64 276 331 74 7 chr4 4708548 4708696 -197619651 + L2 LINE L2 2349 2506 -808 275 342 179 0 chr4 4708722 4708839 -197619508 - L2 LINE L2 -6 3266 3129 25 31 0 0 chr4 4709717 4709749 -197618598 + AT_rich Low_complexity Low_complexity 1 32 0 3292 109 82 25 chr4 4709813 4710384 -197617963 - MER4B LTR ERV1 -6 604 1 1408 239 55 97 chr4 4710407 4710775 -197617572 - L1ME2 LINE L1 -91 6073 5744 2701 112 43 24 chr4 4710775 4711195 -197617152 + MSTA LTR MaLR 1 428 0 1408 239 55 97 chr4 4711195 4711484 -197616863 - L1ME2 LINE L1 -420 5744 5444 231 322 35 56 chr4 4711568 4711711 -197616636 + MLT1K LTR MaLR 134 273 -315 552 314 114 43 chr4 4711988 4712338 -197616009 + L2 LINE L2 2897 3271 -1 746 269 123 8 chr4 4712442 4712835 -197615512 - LTR16C LTR ERVL -2 489 6 253 369 23 37 chr4 4712886 4713103 -197615244 + MIR SINE MIR 30 243 -19 231 290 93 9 chr4 4714512 4714619 -197613728 - MIR SINE MIR -112 150 35 293 317 48 0 chr4 4715339 4715443 -197612904 - MIR SINE MIR -104 158 50 264 300 200 4 chr4 4715515 4715755 -197612592 - L2 LINE L2 -160 3112 2826 3006 231 67 14 chr4 4715801 4716640 -197611707 + MER45B DNA AcHobo 110 992 -48 190 174 22 22 chr4 4716710 4716756 -197611591 + MIR SINE MIR 97 142 -66 401 316 53 21 chr4 4716771 4716958 -197611389 + MIR SINE MIR 1 193 -69 274 297 109 50 chr4 4716961 4717062 -197611285 + MIR SINE MIR 75 181 -81 22 0 0 0 chr4 4717116 4717138 -197611209 + AT_rich Low_complexity Low_complexity 1 22 0 1468 189 7 34 chr4 4717138 4717434 -197610913 - AluJb SINE Alu -24 288 1 482 165 0 0 chr4 4717649 4717728 -197610619 + MLT1A2 LTR MaLR 284 362 -12 2975 221 83 16 chr4 4717746 4718708 -197609639 + L1ME1 LINE L1 4834 5887 -279 2814 110 33 35 chr4 4718708 4719137 -197609210 + MSTC LTR MaLR 1 428 0 2975 221 83 16 chr4 4719137 4719434 -197608913 + L1ME1 LINE L1 5887 6163 -3 186 233 23 0 chr4 4719491 4719534 -197608813 - MIR SINE MIR -67 141 98 284 278 52 21 chr4 4719593 4719690 -197608657 - L2 LINE L2 -13 3300 3201 323 240 166 69 chr4 4719806 4720156 -197608191 + LTR33A LTR ERVL 3 386 -137 327 246 97 18 chr4 4721322 4721436 -197606911 - MLT1H LTR MaLR -3 546 424 832 283 32 18 chr4 4721436 4721719 -197606628 - L2 LINE L2 -886 2428 2142 631 279 14 40 chr4 4721843 4722065 -197606282 + Charlie8 DNA MER1_type 15 230 -2187 235 246 0 16 chr4 4722164 4722225 -197606122 + Charlie8 DNA MER1_type 2358 2417 0 324 203 0 40 chr4 4722969 4723043 -197605304 + MIR3 SINE MIR 93 163 -45 760 257 44 22 chr4 4723127 4723353 -197604994 + MIR SINE MIR 12 242 -20 769 223 76 6 chr4 4723437 4723825 -197604522 + MLT1C LTR MaLR 6 457 -10 255 342 52 11 chr4 4724006 4724155 -197604192 - MIR SINE MIR -75 133 7 197 113 38 94 chr4 4724216 4724269 -197604078 + L2 LINE L2 3264 3313 0 794 271 161 35 chr4 4725312 4725766 -197602581 - MLT1H LTR MaLR -17 532 22 2433 149 5 3 chr4 4725882 4726271 -197602076 - MLT1B LTR MaLR 0 390 1 1730 179 3 20 chr4 4727326 4727622 -197600725 + AluJo SINE Alu 1 291 -21 398 214 12 0 chr4 4728499 4728583 -197599764 - Tigger7 DNA MER2_type -6 2481 2397 * 1560 152 243 28 chr4 4728578 4729011 -197599336 - Tigger7 DNA MER2_type -1961 526 1 542 234 97 0 chr4 4729430 4729575 -197598772 + MIR SINE MIR 23 181 -81 363 267 0 0 chr4 4729799 4729874 -197598473 + MIR SINE MIR 71 145 -117 962 279 59 50 chr4 4729876 4730482 -197597865 + MLT2E LTR ERVL 1 612 -16 727 283 57 11 chr4 4730613 4730896 -197597451 - L1ME4a LINE L1 -267 5854 5559 1102 194 18 31 chr4 4732407 4732634 -197595713 - MER58A DNA MER1_type 0 224 1 474 268 65 22 chr4 4732808 4732946 -197595401 - MIR SINE MIR -97 165 22 320 233 207 7 chr4 4733174 4733324 -197595023 + MIR SINE MIR 77 256 -6 284 258 46 0 chr4 4733972 4734100 -197594247 - MIR3 SINE MIR -14 194 81 240 225 32 79 chr4 4735058 4735189 -197593158 - MIR SINE MIR -41 221 101 315 291 48 0 chr4 4736877 4736988 -197591359 + MIR SINE MIR 51 175 -33 219 220 0 0 chr4 4739989 4740039 -197588308 + A-rich Low_complexity Low_complexity 1 50 0 474 231 70 14 chr4 4740747 4740890 -197587457 + MIR SINE MIR 46 196 -66 252 248 266 9 chr4 4741467 4741580 -197586767 + MER5A DNA MER1_type 35 176 -13 191 262 24 0 chr4 4741815 4741857 -197586490 - L2 LINE L2 -19 3294 3252 264 192 77 0 chr4 4741911 4741963 -197586384 - MIR SINE MIR -138 124 69 294 338 74 26 chr4 4743327 4743718 -197584629 - L1ME4a LINE L1 -748 5398 4989 2850 13 0 0 chr4 4743724 4744033 -197584314 - AluYa5 SINE Alu -2 309 1 395 272 69 60 chr4 4745028 4745260 -197583087 - L2 LINE L2 -89 3183 2950 268 239 28 0 chr4 4745707 4745778 -197582569 - MIR3 SINE MIR -48 160 88 3486 184 41 15 chr4 4745870 4746598 -197581749 + L1MB5 LINE L1 5428 6174 0 1495 164 7 49 chr4 4746604 4746890 -197581457 + AluJo SINE Alu 3 276 -36 732 267 71 0 chr4 4747001 4747211 -197581136 - MIR SINE MIR -20 242 18 890 213 53 12 chr4 4747353 4747522 -197580825 - AluJo SINE Alu -136 176 1 2080 122 6 56 chr4 4747531 4747850 -197580497 - AluSx SINE Alu -9 303 1 238 302 0 16 chr4 4747910 4747973 -197580374 + MIR SINE MIR 201 262 0 1767 215 111 39 chr4 4748000 4748539 -197579808 - MLT1G1 LTR MaLR -12 583 6 252 369 141 0 chr4 4748613 4748811 -197579536 + MIR SINE MIR 31 256 -6 260 236 107 8 chr4 4749448 4749578 -197578769 + MIR SINE MIR 97 243 -19 467 236 189 40 chr4 4749586 4749725 -197578622 + MIR SINE MIR 10 127 -135 1935 146 0 54 chr4 4749725 4750041 -197578306 + AluJb SINE Alu 1 299 -13 467 236 189 40 chr4 4750041 4750113 -197578234 + MIR SINE MIR 127 259 -3 2027 158 0 13 chr4 4750245 4750561 -197577786 - AluJb SINE Alu 0 312 1 1144 206 71 0 chr4 4750569 4750851 -197577496 - L1MD2 LINE L1 -1 6358 6057 2097 111 0 0 chr4 4750901 4751172 -197577175 + AluSx SINE Alu 1 271 -41 2175 52 4 17 chr4 4751177 4751701 -197576646 + LTR10C LTR ERV1 11 591 0 204 97 0 0 chr4 4751716 4751747 -197576600 + (A)n Simple_repeat Simple_repeat 1 31 0 395 252 112 7 chr4 4751787 4751930 -197576417 + MIR SINE MIR 2 159 -103 262 290 12 0 chr4 4752002 4752101 -197576246 - MIR SINE MIR -75 133 33 394 299 222 14 chr4 4752141 4752348 -197575999 + MIR SINE MIR 13 262 0 26 0 0 0 chr4 4752384 4752410 -197575937 + AT_rich Low_complexity Low_complexity 1 26 0 207 319 14 0 chr4 4753759 4753831 -197574516 + MIR SINE MIR 67 139 -123 2859 16 0 0 chr4 4754761 4755072 -197573275 - AluYa5 SINE Alu 0 311 1 395 272 69 60 chr4 4756067 4756299 -197572048 - L2 LINE L2 -89 3183 2950 268 239 28 0 chr4 4756746 4756817 -197571530 - MIR3 SINE MIR -48 160 88 3486 184 41 15 chr4 4756909 4757637 -197570710 + L1MB5 LINE L1 5428 6174 0 1495 164 7 49 chr4 4757643 4757929 -197570418 + AluJo SINE Alu 3 276 -36 732 267 71 0 chr4 4758040 4758250 -197570097 - MIR SINE MIR -20 242 18 263 266 25 13 chr4 4759146 4759225 -197569122 - MIR SINE MIR -64 144 65 272 204 0 19 chr4 4759591 4759645 -197568702 + MIR SINE MIR 58 110 -152 610 198 87 17 chr4 4759762 4759934 -197568413 + MIR SINE MIR 65 248 -14 318 287 0 0 chr4 4759976 4760119 -197568228 + (CAT)n Simple_repeat Simple_repeat 1 143 0 657 230 0 0 chr4 4760172 4760350 -197567997 + (CAT)n Simple_repeat Simple_repeat 2 179 0 693 247 0 0 chr4 4760379 4760720 -197567627 + (CAT)n Simple_repeat Simple_repeat 1 341 0 396 211 0 26 chr4 4760732 4760888 -197567459 + (CAT)n Simple_repeat Simple_repeat 1 152 0 942 185 58 5 chr4 4761306 4761495 -197566852 - MLT1B LTR MaLR 0 390 192 612 185 80 25 chr4 4761575 4761737 -197566610 - MLT1B LTR MaLR -217 173 3 678 329 40 9 chr4 4761751 4761976 -197566371 - MIR SINE MIR -11 251 20 3517 176 97 130 chr4 4762098 4762212 -197566135 + Charlie1a DNA MER1_type 85 201 -2560 1446 6 0 0 chr4 4762212 4762375 -197565972 + (CTATG)n Simple_repeat Simple_repeat 3 165 0 3517 176 97 130 chr4 4762375 4762905 -197565442 + Charlie1a DNA MER1_type 201 747 -2014 2242 110 0 3 chr4 4762905 4763195 -197565152 - AluSc SINE Alu -20 289 1 3517 176 97 130 chr4 4763195 4763924 -197564423 + Charlie1a DNA MER1_type 747 1414 -1347 2296 125 0 0 chr4 4763924 4764227 -197564120 + AluSx SINE Alu 1 303 -9 3517 176 97 130 chr4 4764227 4764268 -197564079 + Charlie1a DNA MER1_type 1414 1455 0 189 297 27 14 chr4 4764274 4764348 -197563999 - MIR SINE MIR -119 143 69 557 270 94 60 chr4 4764393 4764711 -197563636 + LTR16A LTR ERVL 76 404 -46 389 184 26 0 chr4 4765229 4765305 -197563042 + MIR SINE MIR 111 188 -74 313 289 118 7 chr4 4766004 4766139 -197562208 - L3 LINE CR1 -3 1574 1425 219 216 0 0 chr4 4766435 4766472 -197561875 - L2 LINE L2 -91 3181 3145 490 242 67 36 chr4 4766570 4766735 -197561612 + MIR SINE MIR 22 191 -71 634 249 30 18 chr4 4767198 4767367 -197560980 + MIR SINE MIR 22 192 -70 727 304 98 23 chr4 4767611 4767957 -197560390 + L3 LINE CR1 1204 1575 -2 1148 261 112 8 chr4 4767984 4768378 -197559969 - MLT1J2 LTR MaLR -3 447 13 329 289 125 0 chr4 4768416 4768520 -197559827 - L2 LINE L2 0 3272 3156 183 242 97 0 chr4 4768640 4768702 -197559645 + MIR SINE MIR 105 172 -90 221 315 33 11 chr4 4769165 4769257 -197559090 - MIR SINE MIR -122 140 47 383 269 187 8 chr4 4769478 4769612 -197558735 + MIR SINE MIR 4 161 -101 331 299 173 16 chr4 4770203 4770330 -197558017 - L2 LINE L2 -3 3269 3123 346 263 76 42 chr4 4770343 4770461 -197557886 + MIR SINE MIR 80 201 -61 311 276 51 27 chr4 4770870 4771009 -197557338 + MIR SINE MIR 16 154 -65 369 288 54 9 chr4 4771058 4771169 -197557178 + L2 LINE L2 3193 3308 -5 218 200 25 0 chr4 4771171 4771211 -197557136 + L2 LINE L2 3230 3270 -2 208 347 13 13 chr4 4771306 4771381 -197556966 - MIR SINE MIR -64 144 70 540 279 79 70 chr4 4771461 4771877 -197556470 - MLT1L LTR MaLR 0 615 196 327 299 31 20 chr4 4772075 4772213 -197556134 - MIR SINE MIR -67 141 16 495 195 108 104 chr4 4772538 4772825 -197555522 + L1MC4 LINE L1 7626 7913 -129 3678 161 63 6 chr4 4772868 4773531 -197554816 + MER44D DNA MER2_type 5 705 0 244 120 40 0 chr4 4773553 4773603 -197554744 + (CATATA)n Simple_repeat Simple_repeat 5 56 0 285 258 62 55 chr4 4773623 4773751 -197554596 + L1MC4 LINE L1 7914 8042 0 27 0 0 0 chr4 4773756 4773783 -197554564 + AT_rich Low_complexity Low_complexity 1 27 0 387 0 0 0 chr4 4774210 4774253 -197554094 + (CA)n Simple_repeat Simple_repeat 1 43 0 240 230 40 27 chr4 4775014 4775088 -197553259 + L2 LINE L2 2909 2983 -289 456 244 0 0 chr4 4775377 4775467 -197552880 - MIR SINE MIR -103 159 70 469 281 64 41 chr4 4775820 4775991 -197552356 + MER63A DNA MER1_type 1 175 -35 314 270 9 52 chr4 4776023 4776138 -197552209 - MIR SINE MIR -81 181 72 236 231 0 19 chr4 4776376 4776428 -197551919 - MIR SINE MIR -108 100 50 1564 215 55 25 chr4 4776731 4777094 -197551253 + MLT1A2 LTR MaLR 1 374 0 1786 157 168 8 chr4 4777358 4777727 -197550620 + MSTA LTR MaLR 1 428 0 9598 117 19 38 chr4 4777730 4779332 -197549015 + MSTA-int LTR MaLR 4 1575 -5 1895 164 143 11 chr4 4779344 4779722 -197548625 + MSTA LTR MaLR 1 428 0 709 293 57 51 chr4 4779746 4779954 -197548393 - MLT1J LTR MaLR -157 354 142 872 110 0 52 chr4 4779954 4780090 -197548257 + FLAM_C SINE Alu 5 133 0 709 293 57 51 chr4 4780090 4780233 -197548114 - MLT1J LTR MaLR -369 142 1 199 263 0 0 chr4 4780845 4780883 -197547464 + L2 LINE L2 3251 3288 -25 226 269 39 26 chr4 4780944 4781022 -197547325 + MIR SINE MIR 184 262 0 450 295 126 46 chr4 4781057 4781342 -197547005 - L2 LINE L2 0 3272 2965 709 242 66 16 chr4 4782978 4783169 -197545178 + MIR3 SINE MIR 1 201 -7 670 223 0 17 chr4 4783181 4783473 -197544874 + (ATGGTG)n Simple_repeat Simple_repeat 1 287 0 843 204 0 0 chr4 4783475 4783711 -197544636 + (TGG)n Simple_repeat Simple_repeat 1 236 0 243 204 0 0 chr4 4783733 4783787 -197544560 + (TGG)n Simple_repeat Simple_repeat 2 55 0 374 314 72 42 chr4 4783808 4784044 -197544303 - MIR SINE MIR -19 243 1 193 362 48 19 chr4 4784244 4784349 -197543998 + L2 LINE L2 2649 2756 -558 192 348 43 17 chr4 4784415 4784530 -197543817 + L2 LINE L2 2871 2988 -284 424 265 55 61 chr4 4784676 4784857 -197543490 + MIR SINE MIR 13 192 -70 1917 166 13 7 chr4 4785247 4785549 -197542798 - AluJb SINE Alu -8 304 1 201 283 208 9 chr4 4785842 4785948 -197542399 - MIR3 SINE MIR -52 156 30 360 255 145 86 chr4 4786250 4786678 -197541669 - MLT1J LTR MaLR -58 453 1 292 273 61 11 chr4 4786926 4787050 -197541297 + MIR SINE MIR 38 166 -59 4251 274 68 31 chr4 4787050 4787282 -197541065 + L1ME1 LINE L1 22 244 -6152 1586 214 97 3 chr4 4787282 4787642 -197540705 - MSTD LTR MaLR 0 396 3 4251 274 68 31 chr4 4787642 4789401 -197538946 + L1ME1 LINE L1 244 2086 -4310 2293 245 76 27 chr4 4789404 4789956 -197538391 + L1ME1 LINE L1 4923 5446 -789 1413 199 40 34 chr4 4789956 4790252 -197538095 + AluJo SINE Alu 5 302 -10 2293 245 76 27 chr4 4790252 4790959 -197537388 + L1ME1 LINE L1 5446 6230 -5 769 248 36 18 chr4 4791104 4791356 -197536991 - MIR SINE MIR 0 262 6 1613 132 53 64 chr4 4791910 4792225 -197536122 + AluSx SINE Alu 5 316 0 2494 191 48 4 chr4 4792579 4793062 -197535285 + MLT1D LTR MaLR 1 504 -1 571 299 107 14 chr4 4793228 4793509 -197534838 + LTR16A LTR ERVL 113 419 -31 682 172 86 32 chr4 4793826 4794012 -197534335 + MLT1H1 LTR MaLR 360 555 0 340 285 30 35 chr4 4794142 4794310 -197534037 - MIR SINE MIR -18 244 76 296 296 11 0 chr4 4794336 4794424 -197533923 - L2 LINE L2 0 3313 3225 184 295 45 45 chr4 4794434 4794546 -197533801 - L2 LINE L2 -205 3108 2997 273 278 204 0 chr4 4794897 4795005 -197533342 + MIR SINE MIR 23 152 -110 319 294 84 0 chr4 4795152 4795271 -197533076 - L2 LINE L2 0 3272 3144 187 333 107 0 chr4 4795315 4795399 -197532948 - L2 LINE L2 -248 3024 2932 236 335 143 11 chr4 4795450 4795632 -197532715 - L2 LINE L2 -508 2806 2601 407 240 224 22 chr4 4795636 4795815 -197532532 - L2 LINE L2 0 3313 3099 263 240 74 25 chr4 4796182 4796303 -197532044 - L1ME3 LINE L1 -8 6154 6028 217 296 67 137 chr4 4796649 4796933 -197531414 + L2 LINE L2 2943 3206 -66 491 273 86 0 chr4 4797312 4797440 -197530907 + MIR SINE MIR 35 173 -89 21 0 0 0 chr4 4798099 4798120 -197530227 + AT_rich Low_complexity Low_complexity 1 21 0 229 258 61 0 chr4 4798290 4798356 -197529991 - MIR SINE MIR -78 184 115 187 227 0 91 chr4 4799089 4799155 -197529192 + MIR SINE MIR 64 123 -139 412 274 49 97 chr4 4799328 4799554 -197528793 + L2 LINE L2 3027 3241 -31 2067 171 28 6 chr4 4799554 4799911 -197528436 + MLT1A1 LTR MaLR 1 365 0 185 65 32 0 chr4 4799941 4799972 -197528375 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 296 296 22 44 chr4 4799973 4800108 -197528239 - MIR SINE MIR -78 184 53 649 299 124 39 chr4 4801050 4801485 -197526862 + L2 LINE L2 2216 2687 -627 535 296 77 6 chr4 4801553 4801722 -197526625 - MIR SINE MIR -19 243 63 252 231 0 0 chr4 4802167 4802219 -197526128 + L1MB1 LINE L1 6119 6170 -19 408 173 0 36 chr4 4802225 4802335 -197526012 + GA-rich Low_complexity Low_complexity 4 109 0 485 242 22 67 chr4 4802352 4802530 -197525817 - MIR3 SINE MIR -9 199 30 7820 123 15 7 chr4 4803569 4805589 -197522758 + L1PA8A LINE L1 4095 6131 0 290 198 74 12 chr4 4805668 4805749 -197522598 + MIR SINE MIR 105 190 -72 273 281 0 62 chr4 4806060 4806156 -197522191 - MIR3 SINE MIR -32 176 87 2212 139 71 15 chr4 4806185 4806452 -197521895 - MSTB1 LTR MaLR -14 418 120 2700 101 0 5 chr4 4806452 4806827 -197521520 + THE1C LTR MaLR 3 375 0 2212 139 71 15 chr4 4806827 4806955 -197521392 - MSTB1 LTR MaLR -312 120 1 185 247 104 52 chr4 4807421 4807498 -197520849 + L2 LINE L2 3208 3288 -25 359 235 82 0 chr4 4809287 4809385 -197518962 - MIR SINE MIR -109 153 48 385 228 66 81 chr4 4809758 4809894 -197518453 + MIR SINE MIR 2 135 -127 317 291 10 10 chr4 4810758 4810861 -197517486 + MIR SINE MIR 77 179 -83 585 222 16 16 chr4 4810903 4811029 -197517318 + MIR SINE MIR 23 148 -114 1983 154 128 8 chr4 4811037 4811419 -197516928 + MSTA LTR MaLR 1 428 0 7867 168 45 36 chr4 4811419 4813056 -197515291 + MSTA-int LTR MaLR 1 1651 0 1952 135 141 8 chr4 4813056 4813433 -197514914 + MSTA LTR MaLR 1 427 -1 252 363 40 45 chr4 4813457 4813680 -197514667 - MIR SINE MIR -31 231 10 213 39 0 0 chr4 4814062 4814088 -197514259 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 3763 157 21 30 chr4 4814171 4814938 -197513409 + L1MB3 LINE L1 5422 6181 -2 2710 90 0 6 chr4 4815091 4815457 -197512890 - THE1B LTR MaLR 0 364 1 224 161 138 46 chr4 4815525 4815612 -197512735 - MER5A DNA MER1_type -81 108 14 248 163 0 0 chr4 4815719 4815762 -197512585 - MLT2C2 LTR ERVL -2 462 420 232 109 18 18 chr4 4815765 4815820 -197512527 + (TC)n Simple_repeat Simple_repeat 2 56 0 * 314 289 7 0 chr4 4815817 4815966 -197512381 + (TCCA)n Simple_repeat Simple_repeat 3 152 0 * 429 195 11 38 chr4 4815940 4816125 -197512222 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2466 81 0 0 chr4 4816164 4816460 -197511887 - AluY SINE Alu -13 298 3 2014 174 56 5 chr4 4816467 4816857 -197511490 - MLT2C2 LTR ERVL -50 414 5 394 293 45 19 chr4 4816864 4817021 -197511326 + MIR SINE MIR 73 233 -29 1448 243 91 7 chr4 4817615 4818034 -197510313 + MLT1C LTR MaLR 6 459 -8 206 215 46 31 chr4 4818256 4818321 -197510026 + L2 LINE L2 3236 3301 -12 395 178 22 40 chr4 4818644 4818875 -197509472 + CT-rich Low_complexity Low_complexity 1 227 0 277 255 57 28 chr4 4819901 4820007 -197508340 - MIR SINE MIR -63 145 37 236 212 45 15 chr4 4820020 4820086 -197508261 - L3 LINE CR1 -667 910 843 355 311 106 8 chr4 4820116 4820380 -197507967 - L1ME4a LINE L1 0 6121 5832 219 214 0 0 chr4 4820396 4820438 -197507909 - MIR SINE MIR -14 248 207 1813 120 53 25 chr4 4820551 4820834 -197507513 - AluJb SINE Alu -21 291 1 1295 203 77 40 chr4 4820904 4821073 -197507274 + MLT1B LTR MaLR 1 162 -228 2148 71 15 4 chr4 4821073 4821342 -197507005 + AluY SINE Alu 1 272 -39 1295 203 77 40 chr4 4821342 4821547 -197506800 + MLT1B LTR MaLR 162 389 -1 448 252 8 0 chr4 4821548 4821671 -197506676 + L1MA10 LINE L1 6204 6327 -7 445 258 104 16 chr4 4821852 4822034 -197506313 + MIR SINE MIR 63 260 -2 181 255 0 43 chr4 4822154 4822201 -197506146 - MER5A DNA MER1_type -5 184 140 418 143 12 0 chr4 4822211 4822295 -197506052 - L1PB2 LINE L1 0 6151 6067 2183 96 0 0 chr4 4822299 4822600 -197505747 + L1PB1 LINE L1 5823 6123 -28 1280 108 36 0 chr4 4822611 4822805 -197505542 - L1PB2 LINE L1 -366 5785 5585 427 303 75 11 chr4 4823088 4823276 -197505071 - MIR SINE MIR -62 200 1 5914 195 17 15 chr4 4823386 4824607 -197503740 + L1MC1 LINE L1 4285 5503 -830 2164 147 28 19 chr4 4824607 4824968 -197503379 - THE1B LTR MaLR 0 364 1 5914 195 17 15 chr4 4824968 4825504 -197502843 + L1MC1 LINE L1 5503 6049 -284 2015 164 3 0 chr4 4825504 4825814 -197502533 + AluJb SINE Alu 1 311 -1 5914 195 17 15 chr4 4825814 4826097 -197502250 + L1MC1 LINE L1 6049 6330 -3 944 246 87 48 chr4 4826107 4826338 -197502009 - MLT1I LTR MaLR 0 409 158 1955 174 0 0 chr4 4826338 4826631 -197501716 - AluJo SINE Alu -19 293 1 944 246 87 48 chr4 4826631 4826756 -197501591 - MLT1I LTR MaLR -251 158 39 251 375 10 0 chr4 4827038 4827142 -197501205 + MIR SINE MIR 41 145 -63 296 322 26 0 chr4 4827288 4827403 -197500944 + Charlie8 DNA MER1_type 118 235 -2182 353 265 8 8 chr4 4827568 4827827 -197500520 + (TG)n Simple_repeat Simple_repeat 1 259 0 229 238 0 32 chr4 4828689 4828752 -197499595 + (CAGAGA)n Simple_repeat Simple_repeat 3 63 0 229 118 39 0 chr4 4828756 4828807 -197499540 + GA-rich Low_complexity Low_complexity 1 53 0 297 311 60 20 chr4 4829402 4829553 -197498794 - MIR SINE MIR -54 208 52 442 257 164 13 chr4 4829701 4829853 -197498494 - MER5A DNA MER1_type -6 183 9 368 287 49 18 chr4 4830042 4830206 -197498141 + MIR SINE MIR 20 188 -74 992 224 38 19 chr4 4830214 4830477 -197497870 - MLT1C LTR MaLR 0 467 200 542 278 25 0 chr4 4830966 4831128 -197497219 - MER5A DNA MER1_type 0 189 24 237 327 40 40 chr4 4831123 4831224 -197497123 - MIR SINE MIR -91 171 71 * 1869 124 4 18 chr4 4831730 4832005 -197496342 + AluSx SINE Alu 41 311 -1 283 224 0 0 chr4 4832732 4832790 -197495557 + MIR SINE MIR 62 119 -143 191 146 24 0 chr4 4833156 4833197 -197495150 + (TGGG)n Simple_repeat Simple_repeat 3 44 0 227 254 53 30 chr4 4833784 4833885 -197494462 - MIR SINE MIR -58 150 47 226 234 0 0 chr4 4834243 4834290 -197494057 + MIR SINE MIR 107 153 -109 1276 216 41 84 chr4 4834482 4834968 -197493379 + MLT1C LTR MaLR 1 465 -2 2189 106 0 11 chr4 4835156 4835467 -197492880 + AluSx SINE Alu 3 310 0 2294 111 0 0 chr4 4835544 4835841 -197492506 - AluSx SINE Alu -15 297 1 284 300 114 14 chr4 4836320 4836460 -197491887 + MIR SINE MIR 59 212 -50 236 271 59 0 chr4 4836579 4836664 -197491683 + MIR SINE MIR 109 198 -64 252 298 58 41 chr4 4837427 4837548 -197490799 + MIR SINE MIR 78 200 -62 427 223 35 24 chr4 4837684 4837844 -197490503 - MIR SINE MIR 0 262 100 923 60 0 0 chr4 4837890 4838007 -197490340 + FLAM_C SINE Alu 1 117 -16 1175 269 71 35 chr4 4838007 4838526 -197489821 - L2 LINE L2 -6 3307 2776 190 342 51 0 chr4 4838723 4838802 -197489545 + MIR SINE MIR 98 180 -82 385 268 45 45 chr4 4838872 4839029 -197489318 - MIR SINE MIR -85 177 21 279 276 35 11 chr4 4839683 4839770 -197488577 + MIR3 SINE MIR 82 170 -38 1898 156 7 13 chr4 4839785 4840092 -197488255 + AluJo SINE Alu 1 305 -7 342 297 130 0 chr4 4840567 4840705 -197487642 + MIR SINE MIR 105 260 -2 217 357 84 7 chr4 4841170 4841324 -197487023 + MIR SINE MIR 49 214 -48 299 344 58 7 chr4 4841621 4841775 -197486572 + MIR3 SINE MIR 25 186 -22 262 0 26 26 chr4 4841776 4841815 -197486532 + (TTTTG)n Simple_repeat Simple_repeat 4 42 0 1679 127 27 60 chr4 4843921 4844221 -197484126 - AluJo SINE Alu -13 299 10 511 290 32 68 chr4 4844291 4844539 -197483808 + MIR SINE MIR 20 258 -4 1206 122 0 0 chr4 4846985 4847181 -197481166 + Tigger4(Zombi) DNA MER2_type 2479 2674 -57 1083 206 50 52 chr4 4847185 4847549 -197480798 + THE1C LTR MaLR 1 363 -12 189 154 0 0 chr4 4848903 4848942 -197479405 + (CA)n Simple_repeat Simple_repeat 1 39 0 820 247 94 66 chr4 4849721 4850076 -197478271 + MLT1D LTR MaLR 24 397 -108 2160 125 0 3 chr4 4850076 4850371 -197477976 - AluSx SINE Alu -18 294 1 820 247 94 66 chr4 4850371 4850484 -197477863 + MLT1D LTR MaLR 397 505 0 479 216 58 29 chr4 4850561 4850774 -197477573 - L1M LINE L1 -740 5424 5207 1080 180 149 34 chr4 4851285 4851580 -197476767 - THE1C LTR MaLR -46 329 1 520 343 30 4 chr4 4851850 4852121 -197476226 + L1MC4 LINE L1 6446 6723 -1319 181 219 0 109 chr4 4853073 4853137 -197475210 - MIR3 SINE MIR 0 208 152 901 259 214 5 chr4 4853168 4853551 -197474796 - L2 LINE L2 0 3313 2851 21 0 0 0 chr4 4854126 4854147 -197474200 + AT_rich Low_complexity Low_complexity 1 21 0 303 289 10 10 chr4 4854672 4854769 -197473578 + L1M4 LINE L1 4923 5019 -1127 2158 89 25 0 chr4 4854778 4855059 -197473288 + AluSp SINE Alu 1 288 -25 244 279 55 33 chr4 4855078 4855151 -197473196 + L1M4 LINE L1 5010 5080 -1066 2352 100 0 6 chr4 4855151 4855462 -197472885 - AluY SINE Alu -2 309 1 244 279 55 33 chr4 4855462 4855571 -197472776 + L1M4 LINE L1 5080 5196 -950 563 203 42 10 chr4 4855682 4855894 -197472453 + L1M4 LINE L1 5207 5424 -740 1027 240 92 63 chr4 4855971 4856084 -197472263 - MLT1D LTR MaLR 0 505 397 2160 125 0 3 chr4 4856084 4856379 -197471968 + AluSx SINE Alu 1 294 -18 1027 240 92 63 chr4 4856379 4856756 -197471591 - MLT1D LTR MaLR -108 397 1 3415 130 65 25 chr4 4857521 4858036 -197470311 - MER51A LTR ERV1 -9 625 81 2322 96 0 0 chr4 4858036 4858328 -197470019 - AluSq SINE Alu -21 292 1 3415 130 65 25 chr4 4858328 4858413 -197469934 - MER51A LTR ERV1 -553 81 1 1281 122 0 21 chr4 4858611 4858799 -197469548 - FRAM SINE Alu 0 176 1 340 200 147 36 chr4 4858932 4859071 -197469276 + MIR SINE MIR 2 153 -66 257 250 10 52 chr4 4859274 4859370 -197468977 + MIR SINE MIR 109 200 -62 351 113 0 0 chr4 4859418 4859471 -197468876 + (TTA)n Simple_repeat Simple_repeat 1 53 0 1207 289 36 31 chr4 4860187 4860624 -197467723 - MLT1J LTR MaLR 0 511 38 339 261 89 52 chr4 4860710 4860849 -197467498 + MIR SINE MIR 4 146 -66 731 171 0 0 chr4 4861037 4861175 -197467172 - FRAM SINE Alu 0 166 29 219 231 0 0 chr4 4861313 4861352 -197466995 - MER5A DNA MER1_type -90 99 61 1952 117 4 0 chr4 4861421 4861677 -197466670 + AluSx SINE Alu 1 257 -55 210 37 0 0 chr4 4861683 4861710 -197466637 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 817 150 0 8 chr4 4861719 4861839 -197466508 - AluJb SINE Alu -84 228 110 726 139 0 0 chr4 4861953 4862068 -197466279 + AluSp/q SINE Alu 193 307 -6 480 146 9 27 chr4 4862068 4862178 -197466169 + GA-rich Low_complexity Low_complexity 1 108 0 189 0 0 0 chr4 4862906 4862927 -197465420 + (TTA)n Simple_repeat Simple_repeat 1 21 0 280 306 8 24 chr4 4863646 4863770 -197464577 + GA-rich Low_complexity Low_complexity 4 125 0 22 80 0 0 chr4 4864142 4864192 -197464155 + GC_rich Low_complexity Low_complexity 1 50 0 25 65 0 0 chr4 4864349 4864395 -197463952 + GC_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr4 4865683 4865712 -197462635 + GC_rich Low_complexity Low_complexity 1 29 0 209 93 70 0 chr4 4865831 4865874 -197462473 + T-rich Low_complexity Low_complexity 3 48 0 236 309 40 92 chr4 4866840 4866992 -197461355 + MIR SINE MIR 119 262 0 361 257 20 61 chr4 4867685 4867833 -197460514 - MIR3 SINE MIR -26 182 41 351 65 0 0 chr4 4867917 4867963 -197460384 + (A)n Simple_repeat Simple_repeat 1 46 0 21 0 0 0 chr4 4868122 4868143 -197460204 + AT_rich Low_complexity Low_complexity 1 21 0 27 81 0 0 chr4 4868222 4868284 -197460063 + AT_rich Low_complexity Low_complexity 1 62 0 221 246 35 0 chr4 4869920 4869977 -197458370 + MIR3 SINE MIR 98 156 -52 22 106 0 0 chr4 4870299 4870384 -197457963 + GC_rich Low_complexity Low_complexity 1 85 0 319 350 34 0 chr4 4870890 4871007 -197457340 - MIR SINE MIR -122 140 20 23 54 0 0 chr4 4871683 4871720 -197456627 + GC_rich Low_complexity Low_complexity 1 37 0 356 239 17 39 chr4 4872100 4872280 -197456067 + (CA)n Simple_repeat Simple_repeat 1 176 0 405 293 88 7 chr4 4873114 4873261 -197455086 + MIR SINE MIR 33 191 -71 382 326 79 26 chr4 4874321 4874548 -197453799 - MIR SINE MIR -6 256 18 412 224 84 0 chr4 4874913 4875020 -197453327 - MIR SINE MIR -66 196 81 192 251 57 32 chr4 4875288 4875382 -197452965 - MIR SINE MIR -55 153 56 292 309 122 26 chr4 4875432 4875662 -197452685 - L2 LINE L2 -136 3177 2926 346 324 20 0 chr4 4876302 4876450 -197451897 - MIR SINE MIR -36 226 76 277 225 56 0 chr4 4876468 4876539 -197451808 + MER96 DNA MER1_type? 20 94 -81 257 304 16 11 chr4 4876797 4876976 -197451371 - MIR SINE MIR -19 243 65 2028 238 97 54 chr4 4878552 4879431 -197448916 + MER45C DNA AcHobo 5 953 0 289 254 182 39 chr4 4879997 4880178 -197448169 + L2 LINE L2 3107 3313 0 388 272 7 37 chr4 4880309 4880445 -197447902 - L2 LINE L2 -11 3302 3171 22 0 0 0 chr4 4880510 4880532 -197447815 + AT_rich Low_complexity Low_complexity 1 22 0 1057 139 0 17 chr4 4880687 4880860 -197447487 - L1PA8 LINE L1 -8 6164 5995 2113 102 0 54 chr4 4880879 4881192 -197447155 - AluSx SINE Alu -16 296 1 394 325 8 0 chr4 4881197 4881320 -197447027 - MIR SINE MIR -118 144 21 984 291 91 20 chr4 4881381 4881875 -197446472 + L2 LINE L2 2783 3312 -1 2046 126 0 36 chr4 4881878 4882187 -197446160 - AluSx SINE Alu -14 298 1 803 244 16 51 chr4 4882802 4883056 -197445291 + MIR SINE MIR 3 247 -15 280 333 56 43 chr4 4883209 4883371 -197444976 - MIR SINE MIR -76 186 23 2124 138 0 3 chr4 4883793 4884084 -197444263 - AluJb SINE Alu -22 290 1 266 265 72 66 chr4 4884094 4884275 -197444072 - MIR SINE MIR -73 189 8 35 54 0 0 chr4 4884822 4884878 -197443469 + AT_rich Low_complexity Low_complexity 1 56 0 2206 287 65 14 chr4 4884963 4885844 -197442503 - HAL1 LINE L1 0 2507 1582 530 251 151 0 chr4 4885876 4886075 -197442272 - HAL1 LINE L1 -976 1531 1303 2091 180 30 13 chr4 4886078 4886473 -197441874 + Tigger4(Zombi) DNA MER2_type 1 402 -2329 2301 101 0 0 chr4 4886478 4886774 -197441573 + AluSq SINE Alu 1 296 -17 25 31 0 0 chr4 4886774 4886806 -197441541 + AT_rich Low_complexity Low_complexity 1 32 0 2067 161 50 48 chr4 4886806 4887267 -197441080 + Tigger4(Zombi) DNA MER2_type 392 853 -1878 703 192 8 0 chr4 4887267 4887392 -197440955 + AluJ SINE Alu 1 126 -186 819 206 16 38 chr4 4887606 4887790 -197440557 + AluJ SINE Alu 116 295 -17 1263 141 0 0 chr4 4887790 4887981 -197440366 + AluSc SINE Alu 119 309 0 2482 142 21 16 chr4 4887998 4888421 -197439926 + Tigger4(Zombi) DNA MER2_type 829 1253 -1478 889 144 0 0 chr4 4888456 4888574 -197439773 - FLAM_C SINE Alu -25 118 1 5501 131 24 11 chr4 4888576 4888640 -197439707 + Tigger4(Zombi) DNA MER2_type 1237 1299 -1432 1583 183 72 11 chr4 4888640 4888942 -197439405 - AluJo SINE Alu 0 312 1 5501 131 24 11 chr4 4888942 4889789 -197438558 + Tigger4(Zombi) DNA MER2_type 1299 2160 -571 975 79 9 2 chr4 4889827 4890086 -197438261 + AluSx SINE Alu 1 306 0 1439 148 52 20 chr4 4890096 4890401 -197437946 + Tigger4(Zombi) DNA MER2_type 2178 2492 -239 2588 117 2 8 chr4 4890538 4890939 -197437408 - L1P LINE L1 -5745 401 3 248 208 31 39 chr4 4890940 4891070 -197437277 - L1MEc LINE L1 -2185 4030 3902 472 151 54 0 chr4 4891070 4891163 -197437184 - MSTB LTR MaLR 0 426 329 2825 206 20 43 chr4 4891176 4891510 -197436837 - L1MEc LINE L1 -3066 3149 2809 1616 206 7 4 chr4 4891510 4891812 -197436535 - AluJb SINE Alu 0 303 1 2825 206 20 43 chr4 4891812 4892331 -197436016 - L1MEc LINE L1 -3406 2809 2315 15003 92 1 1 chr4 4892612 4894800 -197433547 + L1P LINE L1 2814 5001 -1145 726 139 0 0 chr4 4895414 4895529 -197432818 + AluSp/q SINE Alu 193 307 -6 188 0 0 69 chr4 4895529 4895558 -197432789 + (GGA)n Simple_repeat Simple_repeat 1 27 0 37 70 0 0 chr4 4896819 4896862 -197431485 + AT_rich Low_complexity Low_complexity 1 43 0 213 194 0 0 chr4 4897072 4897108 -197431239 + (TG)n Simple_repeat Simple_repeat 1 36 0 4343 268 41 20 chr4 4897108 4897752 -197430595 - L1MEc LINE L1 -4318 2078 1449 203 0 0 36 chr4 4897752 4897780 -197430567 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1141 196 61 88 chr4 4897784 4898080 -197430267 - AluJo SINE Alu -14 288 1 4343 268 41 20 chr4 4898080 4899025 -197429322 - L1MEc LINE L1 -4949 1447 450 382 333 7 0 chr4 4899042 4899189 -197429158 - L1MEc LINE L1 -6026 370 223 1588 171 171 16 chr4 4899235 4899604 -197428743 + MSTA LTR MaLR 1 426 -2 1408 205 51 60 chr4 4899607 4900041 -197428306 + MLT1D LTR MaLR 76 505 0 1867 244 26 2 chr4 4900043 4900503 -197427844 + MLT1D-int LTR MaLR 4 474 -897 1275 204 110 31 chr4 4900476 4900859 -197427488 - L1ME2 LINE L1 -100 6064 5652 * 235 164 46 46 chr4 4901408 4901560 -197426787 + (TA)n Simple_repeat Simple_repeat 1 152 0 963 271 94 59 chr4 4901792 4902217 -197426130 + MLT1J1 LTR MaLR 7 446 0 793 196 111 7 chr4 4902260 4902413 -197425934 + FAM SINE Alu 1 169 -6 35484 29 2 0 chr4 4902513 4907499 -197420848 + L1PA3 LINE L1 1161 6154 -1 943 286 23 0 chr4 4907470 4907774 -197420573 + L1M4 LINE L1 3928 4238 -1908 * 4810 66 11 1 chr4 4907924 4908963 -197419384 + L1PA7 LINE L1 5005 6154 0 209 122 0 24 chr4 4909304 4909345 -197419002 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 21 0 0 0 chr4 4909726 4909747 -197418600 + AT_rich Low_complexity Low_complexity 1 21 0 365 297 50 50 chr4 4909776 4909889 -197418458 - MIR SINE MIR -74 188 73 534 243 18 0 chr4 4909889 4910000 -197418347 - MER81 DNA DNA -1 113 1 365 297 50 50 chr4 4910000 4910068 -197418279 - MIR SINE MIR -188 74 7 219 303 0 45 chr4 4910090 4910179 -197418168 - MIR SINE MIR -163 99 15 1917 80 3 45 chr4 4910463 4910749 -197417598 + AluSx SINE Alu 1 274 -38 297 118 0 0 chr4 4910857 4910908 -197417439 + (TC)n Simple_repeat Simple_repeat 2 52 0 902 283 29 18 chr4 4911259 4911531 -197416816 + MLT1J LTR MaLR 11 285 -226 358 281 26 18 chr4 4911563 4911677 -197416670 + L1MEd LINE L1 693 807 -5312 267 288 25 0 chr4 4911688 4911768 -197416579 + MLT1J LTR MaLR 313 394 -117 2442 159 23 21 chr4 4911907 4912334 -197416013 + MSTB1 LTR MaLR 1 428 -4 378 271 189 0 chr4 4912554 4912676 -197415671 - MIR SINE MIR -1 261 117 277 231 68 60 chr4 4912674 4912791 -197415556 + L2 LINE L2 2861 2978 -294 * 568 206 48 0 chr4 4912825 4912971 -197415376 - MER53 DNA DNA -8 181 29 2155 117 0 0 chr4 4912986 4913295 -197415052 - AluSc SINE Alu 0 309 1 546 279 27 100 chr4 4913318 4913329 -197415018 + L2 LINE L2 2962 2972 -300 2041 124 7 7 chr4 4913329 4913636 -197414711 - AluSx SINE Alu -5 307 1 546 279 27 100 chr4 4913636 4913954 -197414393 + L2 LINE L2 2972 3267 -5 202 343 14 0 chr4 4913946 4914019 -197414328 - MIR SINE MIR -135 127 54 * 736 279 36 0 chr4 4914137 4914356 -197413991 + MIR SINE MIR 25 251 -11 285 350 162 23 chr4 4914368 4914523 -197413824 + L2 LINE L2 2846 2978 -335 1936 117 14 0 chr4 4914523 4914806 -197413541 + AluSg SINE Alu 1 287 -23 285 350 162 23 chr4 4914806 4915039 -197413308 + L2 LINE L2 2978 3288 -25 184 194 0 28 chr4 4915185 4915221 -197413126 - L2 LINE L2 -3 3310 3276 319 330 78 28 chr4 4915446 4915611 -197412736 - MIR SINE MIR -65 143 4 250 233 0 0 chr4 4915785 4915845 -197412502 + (TTCA)n Simple_repeat Simple_repeat 2 61 0 193 136 0 68 chr4 4916299 4916343 -197412004 - L2 LINE L2 -101 3212 3172 3464 234 58 28 chr4 4916505 4916535 -197411812 - MER45B DNA AcHobo -570 1011 983 4041 113 33 6 chr4 4916535 4917180 -197411167 + L1PB2 LINE L1 5482 6143 -8 3464 234 58 28 chr4 4917180 4917270 -197411077 - MER45B DNA AcHobo -598 983 897 1862 142 26 13 chr4 4917270 4917573 -197410774 + AluSx SINE Alu 1 307 -5 3464 234 58 28 chr4 4917573 4918376 -197409971 - MER45B DNA AcHobo -684 897 59 232 329 38 0 chr4 4919562 4919641 -197408706 - MIR SINE MIR -117 145 64 288 239 5 178 chr4 4920294 4920491 -197407856 - MLT1H LTR MaLR -375 174 12 398 309 20 26 chr4 4920555 4920707 -197407640 + MIR SINE MIR 47 197 -65 474 197 12 4 chr4 4920918 4921020 -197407327 + MER2 DNA MER2_type 1 101 -138 276 30 0 0 chr4 4921127 4921160 -197407187 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 205 281 97 18 chr4 4921508 4921622 -197406725 - MIR SINE MIR -51 211 89 498 188 40 10 chr4 4921926 4922027 -197406320 - MIR3 SINE MIR -41 167 64 216 0 0 0 chr4 4922044 4922068 -197406279 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 342 0 0 0 chr4 4922067 4922105 -197406242 + (CA)n Simple_repeat Simple_repeat 1 38 0 406 224 12 0 chr4 4922710 4922795 -197405552 + MIR SINE MIR 71 156 -106 187 297 33 33 chr4 4923029 4923120 -197405227 - MIR SINE MIR -7 255 165 212 258 175 10 chr4 4923176 4923273 -197405074 - MIR SINE MIR -46 216 104 243 61 0 0 chr4 4923335 4923368 -197404979 + (TC)n Simple_repeat Simple_repeat 1 33 0 2134 129 44 41 chr4 4923633 4923996 -197404351 - THE1B LTR MaLR 0 364 1 192 222 48 16 chr4 4924341 4924404 -197403943 + L2 LINE L2 3207 3271 -1 364 274 7 78 chr4 4924470 4924517 -197403830 - MIR3 SINE MIR -52 156 107 2056 143 12 70 chr4 4924517 4924931 -197403416 + MLT1B LTR MaLR 1 390 0 364 274 7 78 chr4 4924931 4925036 -197403311 - MIR3 SINE MIR -101 107 15 2091 101 0 20 chr4 4925197 4925503 -197402844 + AluSq SINE Alu 1 300 -13 539 282 65 77 chr4 4925736 4925984 -197402363 + MIR SINE MIR 15 259 -3 23 0 0 0 chr4 4926052 4926075 -197402272 + AT_rich Low_complexity Low_complexity 1 23 0 420 324 0 0 chr4 4927245 4927353 -197400994 - MER81 DNA DNA -6 108 1 530 259 22 22 chr4 4927712 4927851 -197400496 - MIR SINE MIR -118 144 6 191 229 314 38 chr4 4928086 4928191 -197400156 + MIR3 SINE MIR 10 143 -65 * 283 232 101 0 chr4 4928165 4928234 -197400113 + MIR SINE MIR 117 192 -70 276 236 28 14 chr4 4928263 4928335 -197400012 - MIR SINE MIR -6 256 184 571 157 102 0 chr4 4928441 4928549 -197399798 - MER53 DNA DNA -68 121 3 784 173 161 0 chr4 4928968 4929130 -197399217 + MER5A DNA MER1_type 2 189 0 326 263 34 42 chr4 4930377 4930495 -197397852 - L2 LINE L2 -70 3243 3127 2811 239 31 50 chr4 4930587 4931041 -197397306 - L1ME1 LINE L1 -5 6161 5729 1585 154 48 0 chr4 4931041 4931314 -197397033 - AluJb SINE Alu -26 286 1 2811 239 31 50 chr4 4931314 4931748 -197396599 - L1ME1 LINE L1 -437 5729 5289 374 246 64 0 chr4 4931730 4931840 -197396507 - L1ME1 LINE L1 -1741 4405 4289 * 1963 99 18 0 chr4 4931972 4932245 -197396102 - AluSx SINE Alu -30 282 5 1572 127 0 27 chr4 4932253 4932453 -197395894 + Tigger4(Zombi) DNA MER2_type 2479 2672 -59 1922 140 64 17 chr4 4932453 4932811 -197395536 + THE1C LTR MaLR 1 375 0 1572 127 0 27 chr4 4932811 4932870 -197395477 + Tigger4(Zombi) DNA MER2_type 2672 2731 0 1141 261 106 79 chr4 4932889 4933675 -197394672 - HAL1 LINE L1 -1254 1253 447 331 210 0 25 chr4 4933855 4933936 -197394411 + MLT1C LTR MaLR 386 464 -3 316 266 9 101 chr4 4934383 4934492 -197393855 - MIR SINE MIR -74 134 36 1416 193 46 21 chr4 4935019 4935346 -197393001 + MLT1A1 LTR MaLR 31 365 0 304 145 0 157 chr4 4935977 4936060 -197392287 + MIR SINE MIR 107 176 -86 246 336 164 0 chr4 4936211 4936321 -197392026 + L2 LINE L2 3180 3307 -6 269 318 86 20 chr4 4937228 4937379 -197390968 + MIR SINE MIR 23 183 -79 237 33 0 0 chr4 4937427 4937457 -197390890 + (TG)n Simple_repeat Simple_repeat 2 31 0 366 224 0 13 chr4 4938310 4938386 -197389961 - AluJb SINE Alu 0 302 228 884 174 17 17 chr4 4938386 4938558 -197389789 - AluJb SINE Alu -140 172 1 653 311 55 0 chr4 4938825 4939044 -197389303 + MIR SINE MIR 1 231 -31 1401 222 58 51 chr4 4939046 4939497 -197388850 + MLT1D LTR MaLR 1 454 -51 332 133 17 0 chr4 4941158 4941218 -197387129 + MLT1D LTR MaLR 442 502 -3 664 157 33 0 chr4 4941440 4941561 -197386786 + MLT1D LTR MaLR 1 125 -380 1927 160 37 62 chr4 4941563 4942006 -197386341 + MLT2B2 LTR ERVL 3 414 0 417 147 0 15 chr4 4942010 4942078 -197386269 - MLT1E1 LTR MaLR -1 653 587 1826 209 27 8 chr4 4942081 4942450 -197385897 + MLT1D LTR MaLR 130 505 0 1673 205 67 14 chr4 4942543 4942914 -197385433 - MLT1E LTR MaLR 0 593 203 308 265 61 10 chr4 4942950 4943003 -197385344 - MLT1E LTR MaLR -490 103 54 1983 122 49 30 chr4 4943003 4943371 -197384976 - THE1C LTR MaLR 0 375 1 308 265 61 10 chr4 4943371 4943415 -197384932 - MLT1E LTR MaLR -539 54 1 498 248 102 13 chr4 4943520 4943677 -197384670 + MIR SINE MIR 41 211 -51 364 287 119 45 chr4 4943796 4944040 -197384307 + MLT1J LTR MaLR 5 266 -245 269 238 105 9 chr4 4944078 4944183 -197384164 + MLT1J LTR MaLR 347 461 -50 227 272 37 25 chr4 4944316 4944397 -197383950 - LTR16A1 LTR ERVL 0 457 376 901 198 104 85 chr4 4944849 4945213 -197383134 - MLT1C LTR MaLR -96 371 1 289 284 164 35 chr4 4945245 4945555 -197382792 - MLT1K LTR MaLR -16 572 223 1619 239 67 16 chr4 4946052 4946488 -197381859 - MLT1C LTR MaLR 0 467 10 452 188 50 0 chr4 4946548 4946649 -197381698 + LTR16C LTR ERVL 385 490 -1 413 338 13 19 chr4 4946791 4946945 -197381402 - MIR SINE MIR -100 162 10 3842 161 38 56 chr4 4947164 4947807 -197380540 - L1MA7 LINE L1 -1 6290 5637 1932 140 15 82 chr4 4947807 4948207 -197380140 - THE1C LTR MaLR -2 373 1 3842 161 38 56 chr4 4948207 4948271 -197380076 - L1MA7 LINE L1 -654 5637 5573 2401 70 3 0 chr4 4948271 4948573 -197379774 - AluY SINE Alu -8 303 1 3842 161 38 56 chr4 4948573 4948704 -197379643 - L1MA7 LINE L1 -718 5573 5466 375 304 83 80 chr4 4949195 4949655 -197378692 - MLT1K LTR MaLR -22 566 106 404 241 12 0 chr4 4949746 4949829 -197378518 - HERV16 LTR ERVL -2072 2924 2841 1318 326 73 30 chr4 4949861 4950787 -197377560 - HERV16 LTR ERVL -2264 2732 1765 5647 160 28 29 chr4 4950867 4952339 -197376008 - L1MA4 LINE L1 -2 6298 4804 * 10385 177 16 3 chr4 4952338 4954395 -197373952 + L1 LINE L1 2628 4711 -1435 1103 130 0 0 chr4 4954395 4954595 -197373752 + AluSg/x SINE Alu 131 330 0 712 101 0 0 chr4 4954595 4954694 -197373653 + L1 LINE L1 4708 4806 -1340 1003 310 117 79 chr4 4954742 4955629 -197372718 - HERV16 LTR ERVL -3555 1441 748 2153 139 12 18 chr4 4955957 4956296 -197372051 + MER1B DNA MER1_type 1 337 0 383 162 0 15 chr4 4956364 4956432 -197371915 - MLT1A2 LTR MaLR 0 374 308 1645 112 75 0 chr4 4956432 4956673 -197371674 + AluSx SINE Alu 1 259 -53 1491 207 25 19 chr4 4956707 4957021 -197371326 - MLT1A2 LTR MaLR -58 316 1 471 348 65 0 chr4 4957023 4957224 -197371123 - HERV16 LTR ERVL -4761 235 22 431 250 47 8 chr4 4957231 4957359 -197370988 + MLT1A1 LTR MaLR 229 361 -4 1341 179 82 15 chr4 4957811 4957928 -197370419 + AluJo SINE Alu 1 109 -203 480 18 0 0 chr4 4957928 4957985 -197370362 + (CA)n Simple_repeat Simple_repeat 2 58 0 1341 179 82 15 chr4 4957985 4958135 -197370212 + AluJo SINE Alu 109 286 -26 779 172 208 37 chr4 4958283 4958514 -197369833 + MLT2B2 LTR ERVL 174 493 -22 392 307 114 6 chr4 4958760 4958926 -197369421 - MIR SINE MIR -75 187 4 348 321 84 11 chr4 4959581 4959771 -197368576 - MIR3 SINE MIR -2 206 3 739 298 69 40 chr4 4960259 4960706 -197367641 - LTR33 LTR ERVL 0 521 62 423 231 111 34 chr4 4960750 4960968 -197367379 + Charlie8 DNA MER1_type 83 1386 -1031 180 234 160 75 chr4 4961010 4961104 -197367243 - MIR SINE MIR -87 121 20 202 319 44 0 chr4 4962067 4962158 -197366189 + L2 LINE L2 3094 3188 -125 321 53 0 0 chr4 4962158 4962196 -197366151 + THE1C LTR MaLR 123 160 -215 * 550 186 105 24 chr4 4962184 4962308 -197366039 - THE1C LTR MaLR -241 134 1 6533 101 8 6 chr4 4962308 4963189 -197365158 - THE1C-int LTR MaLR 0 1580 698 2148 72 7 17 chr4 4963177 4963470 -197364877 - THE1C-int LTR MaLR -1290 290 1 * 2056 146 64 14 chr4 4963470 4963827 -197364520 - THE1C LTR MaLR 0 375 1 524 282 15 8 chr4 4963829 4963960 -197364387 + L2 LINE L2 3182 3313 0 219 358 123 12 chr4 4966262 4966424 -197361923 + MIR SINE MIR 79 258 -4 1088 117 0 134 chr4 4966715 4966938 -197361409 - 7SK RNA RNA 0 193 1 1663 140 59 0 chr4 4967585 4967856 -197360491 - AluSq SINE Alu -15 298 12 197 284 58 77 chr4 4968445 4968600 -197359747 + MIR3 SINE MIR 4 155 -53 372 308 6 38 chr4 4969097 4969254 -197359093 + MIR SINE MIR 45 191 -65 186 222 56 19 chr4 4969433 4969487 -197358860 + MIR3 SINE MIR 9 64 -144 2099 100 81 36 chr4 4969526 4969885 -197358462 + THE1C LTR MaLR 1 375 0 525 282 77 23 chr4 4969943 4970202 -197358145 - LTR16C LTR ERVL -4 487 215 197 269 39 0 chr4 4970412 4970464 -197357883 + MIR SINE MIR 209 262 0 327 235 15 91 chr4 4970483 4970615 -197357732 + MLT1L LTR MaLR 43 164 -451 5081 111 10 9 chr4 4970745 4971612 -197356735 - L1P3 LINE L1 -4549 1912 1051 5753 106 2 7 chr4 4971612 4972115 -197356232 + L1P LINE L1 1644 2143 -4003 3315 137 8 6 chr4 4972115 4972625 -197355722 + MER9 LTR ERVK 1 511 0 5753 106 2 7 chr4 4972625 4972953 -197355394 + L1P LINE L1 2143 2471 -3675 4118 141 34 23 chr4 5023042 5023739 -197304608 + MER44D DNA MER2_type 1 705 0 205 188 35 35 chr4 5023924 5024009 -197304338 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 2811 78 54 29 chr4 5024042 5024450 -197303897 - L1PB2 LINE L1 -2 6149 5732 786 127 11 33 chr4 5025450 5025631 -197302716 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 1212 136 99 113 chr4 5025639 5025941 -197302406 - AluJo SINE Alu -1 311 14 233 247 0 55 chr4 5026099 5026172 -197302175 + GA-rich Low_complexity Low_complexity 4 72 0 403 178 0 0 chr4 5026882 5026955 -197301392 + MIR SINE MIR 78 150 -112 213 279 0 93 chr4 5027030 5027116 -197301231 + L3 LINE CR1 1411 1488 -89 758 80 0 9 chr4 5027153 5027265 -197301082 + (TTCC)n Simple_repeat Simple_repeat 2 112 0 1933 137 9 40 chr4 5027265 5027587 -197300760 - AluSx SINE Alu 0 312 1 245 111 44 0 chr4 5027723 5027768 -197300579 + C-rich Low_complexity Low_complexity 3 49 0 360 286 100 55 chr4 5028235 5028792 -197299555 - L1ME3A LINE L1 -273 5897 5286 * 421 284 5 58 chr4 5028784 5028901 -197299446 - L1ME3A LINE L1 -2029 4117 4012 2674 122 11 3 chr4 5028901 5029262 -197299085 + THE1B LTR MaLR 1 364 0 421 284 5 58 chr4 5029262 5029334 -197299013 - L1ME3A LINE L1 -2134 4012 3938 1352 251 61 10 chr4 5029339 5029746 -197298601 - L1ME3A LINE L1 -1 6169 5742 865 245 116 4 chr4 5029768 5030001 -197298346 - L1ME3A LINE L1 -517 5653 5395 830 166 0 21 chr4 5030002 5030147 -197298200 + FLAM_C SINE Alu 1 142 -1 958 192 12 75 chr4 5030275 5030321 -197298026 - MER33 DNA MER1_type -2359 226 179 2066 93 8 0 chr4 5030321 5030589 -197297758 - AluSx SINE Alu -12 300 31 958 192 12 75 chr4 5030589 5030782 -197297565 - MER33 DNA MER1_type -2406 179 2 448 265 80 15 chr4 5030790 5031171 -197297176 - L1ME LINE L1 -654 5508 5107 278 154 51 8 chr4 5031181 5031298 -197297049 + (TA)n Simple_repeat Simple_repeat 1 122 0 777 126 20 16 chr4 5031322 5031831 -197296516 + (TA)n Simple_repeat Simple_repeat 1 511 0 26 0 0 0 chr4 5031831 5031857 -197296490 + AT_rich Low_complexity Low_complexity 1 26 0 354 304 66 28 chr4 5031915 5032096 -197296251 + L2 LINE L2 2005 2192 -1122 433 242 160 45 chr4 5032119 5032388 -197295959 - LTR50 LTR ERVL 0 795 496 645 191 77 55 chr4 5032495 5032678 -197295669 - LTR41 LTR ERVL -586 187 1 2175 125 0 0 chr4 5032705 5033000 -197295347 - AluSx SINE Alu -17 295 1 536 362 119 21 chr4 5033001 5033581 -197294766 + L2 LINE L2 2229 2865 -449 255 284 91 26 chr4 5033697 5033833 -197294514 + L2 LINE L2 2871 3009 -263 2367 120 38 44 chr4 5033967 5034333 -197294014 - THE1B LTR MaLR 0 364 1 220 362 0 19 chr4 5034333 5034438 -197293909 + L2 LINE L2 3136 3238 -34 266 31 0 0 chr4 5034616 5034648 -197293699 - L1PB3 LINE L1 -2 6152 6121 674 92 0 0 chr4 5034648 5034735 -197293612 - MSTA LTR MaLR 0 428 342 2140 125 117 6 chr4 5034835 5035195 -197293152 - MSTA LTR MaLR -28 400 1 356 23 0 0 chr4 5035215 5035259 -197293088 + MADE1 DNA Mariner 36 79 -1 290 54 0 143 chr4 5035269 5035325 -197293022 - MADE1 DNA Mariner -32 48 1 1599 149 32 0 chr4 5035325 5035574 -197292773 - L1PB3 LINE L1 -58 6096 5840 221 312 37 18 chr4 5035576 5035685 -197292662 - MIR SINE MIR -73 189 79 580 203 63 76 chr4 5035744 5035981 -197292366 + MER113 DNA MER1_type? 6 239 -282 546 191 8 63 chr4 5036002 5036128 -197292219 - L1MA9 LINE L1 -115 6197 6079 842 93 0 0 chr4 5036321 5036429 -197291918 - AluY SINE Alu -5 306 199 1091 213 30 0 chr4 5036641 5036876 -197291471 + MIR SINE MIR 6 247 -15 572 296 47 24 chr4 5036914 5037127 -197291220 + MIR SINE MIR 16 233 -29 589 258 76 15 chr4 5037638 5037836 -197290511 + MLT1B LTR MaLR 6 215 -175 * 1192 275 120 14 chr4 5037809 5038242 -197290105 - MER45B DNA AcHobo -560 480 2 229 315 91 50 chr4 5038568 5038787 -197289560 - L2 LINE L2 -337 2977 2750 221 344 131 0 chr4 5038877 5038999 -197289348 - L2 LINE L2 -3 3269 3132 1995 124 3 10 chr4 5039194 5039500 -197288847 + AluSq SINE Alu 1 304 -9 834 271 46 17 chr4 5039556 5040231 -197288116 - L1M4 LINE L1 -1338 4808 3921 203 347 59 59 chr4 5040267 5040486 -197287861 - MIR SINE MIR -35 227 9 225 222 69 42 chr4 5040654 5040726 -197287621 + MIR SINE MIR 108 181 -81 242 301 48 10 chr4 5040778 5040881 -197287466 - MLT1K LTR MaLR -3 585 479 839 318 59 3 chr4 5040985 5041306 -197287041 + LTR16C LTR ERVL 144 482 -9 304 203 0 0 chr4 5041323 5041382 -197286965 - MER96 DNA MER1_type? 0 175 117 267 258 2 28 chr4 5041902 5041980 -197286367 - MIR SINE MIR -54 154 78 1188 284 48 13 chr4 5043016 5043494 -197284853 + L1ME LINE L1 805 1299 -5231 1039 280 52 53 chr4 5043514 5044307 -197284040 + L1ME LINE L1 1676 2467 -4073 559 242 136 70 chr4 5044430 5045049 -197283298 + L2 LINE L2 2545 3206 -107 2326 131 18 15 chr4 5045055 5045391 -197282956 + MER1B DNA MER1_type 1 337 0 407 320 8 8 chr4 5045415 5045537 -197282810 + L2 LINE L2 3178 3299 -14 210 71 0 0 chr4 5045538 5045566 -197282781 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1014 274 123 33 chr4 5045579 5046003 -197282344 - MLT1K LTR MaLR -114 474 13 240 349 151 18 chr4 5046055 5046221 -197282126 + L2 LINE L2 3083 3270 -2 769 259 61 64 chr4 5047307 5047620 -197280727 + MLT1I LTR MaLR 10 321 -88 1268 164 33 109 chr4 5047643 5047812 -197280535 - AluJb SINE Alu 0 312 132 241 26 26 26 chr4 5047812 5047851 -197280496 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1268 164 33 109 chr4 5047851 5047865 -197280482 - AluJb SINE Alu -180 132 119 2107 95 0 0 chr4 5047865 5048138 -197280209 - AluSx SINE Alu -39 273 1 1268 164 33 109 chr4 5048138 5048282 -197280065 - AluJb SINE Alu -193 119 9 448 171 13 0 chr4 5048283 5048359 -197279988 + MLT1I LTR MaLR 333 409 0 971 255 92 84 chr4 5048373 5049067 -197279280 - L1MEc LINE L1 -2070 4145 3439 2145 112 3 0 chr4 5049067 5049353 -197278994 - AluSp SINE Alu -26 287 1 971 255 92 84 chr4 5049353 5049679 -197278668 - L1MEc LINE L1 -2776 3439 3117 561 316 86 21 chr4 5049721 5050584 -197277763 - L1MEc LINE L1 -4639 1757 839 303 293 121 57 chr4 5051009 5051166 -197277181 - L1MEc LINE L1 -5901 304 138 236 345 85 20 chr4 5051213 5051413 -197276934 + L2 LINE L2 1707 1919 -1395 1145 83 0 13 chr4 5051587 5051764 -197276583 - AluY SINE Alu 0 306 132 810 161 8 0 chr4 5051864 5051994 -197276353 - AluJo SINE Alu -177 135 5 374 259 46 8 chr4 5051999 5052130 -197276217 - MER103 DNA DNA -24 142 7 258 269 45 0 chr4 5052922 5052989 -197275358 - L2 LINE L2 -3 3310 3241 610 313 28 14 chr4 5053017 5053228 -197275119 - MIR SINE MIR -7 255 42 2219 74 0 14 chr4 5054252 5054549 -197273798 + AluY SINE Alu 1 293 -18 494 310 105 0 chr4 5054831 5055002 -197273345 + MIR SINE MIR 2 190 -72 383 223 106 11 chr4 5055205 5055299 -197273048 + L2 LINE L2 3210 3312 -1 554 306 19 0 chr4 5055379 5055539 -197272808 + MIR SINE MIR 96 258 -4 379 273 11 0 chr4 5055820 5055908 -197272439 - L2 LINE L2 0 3272 3184 4998 159 39 5 chr4 5055908 5056764 -197271583 + L1MC1 LINE L1 5415 6299 -34 1597 72 0 10 chr4 5056779 5056986 -197271361 - L1PA6 LINE L1 -1 6153 5949 375 289 90 74 chr4 5057020 5057397 -197270950 - L2 LINE L2 -78 3235 2853 448 200 90 44 chr4 5058020 5058172 -197270175 - MER63A DNA MER1_type 0 210 50 295 146 0 0 chr4 5058223 5058264 -197270083 - MER63A DNA MER1_type -169 41 1 389 338 46 0 chr4 5058265 5058416 -197269931 + MIR SINE MIR 53 210 -52 211 280 187 9 chr4 5059299 5059406 -197268941 + L2 LINE L2 3121 3246 -26 205 384 59 27 chr4 5059438 5059657 -197268690 - L2 LINE L2 -53 3219 2994 * 453 309 8 8 chr4 5059628 5059751 -197268596 + L2 LINE L2 3150 3272 0 390 325 69 46 chr4 5059756 5060155 -197268192 - L2 LINE L2 -262 3010 2595 1809 171 53 13 chr4 5060720 5061100 -197267247 - L1MA9 LINE L1 0 6312 5918 325 310 8 23 chr4 5061506 5061635 -197266712 - MIR SINE MIR -62 146 20 349 268 109 91 chr4 5062189 5062454 -197265893 + L2 LINE L2 3036 3305 -8 196 291 89 0 chr4 5062537 5062616 -197265731 + L2 LINE L2 3137 3222 -50 2529 125 48 17 chr4 5062782 5063197 -197265150 - MSTA LTR MaLR 0 428 1 637 144 0 65 chr4 5063207 5063346 -197265001 - FRAM SINE Alu -4 172 43 1948 122 7 0 chr4 5063560 5063846 -197264501 + AluSx SINE Alu 1 288 -24 910 284 107 3 chr4 5063943 5064298 -197264049 + MER113 DNA MER1_type? 20 411 -110 238 182 0 23 chr4 5064432 5064476 -197263871 + CT-rich Low_complexity Low_complexity 3 45 0 225 0 0 0 chr4 5064484 5064509 -197263838 + (T)n Simple_repeat Simple_repeat 1 25 0 2061 106 0 0 chr4 5064590 5064914 -197263433 + AluSg SINE Alu 1 324 0 228 217 51 0 chr4 5065234 5065301 -197263046 - Charlie8 DNA MER1_type -2 2415 1345 254 328 38 15 chr4 5065592 5065723 -197262624 + L2 LINE L2 3075 3208 -105 320 263 41 36 chr4 5065880 5066074 -197262273 - L1M4 LINE L1 -2164 3982 3788 256 283 157 18 chr4 5066335 5066501 -197261846 - L1ME LINE L1 -438 5683 5495 283 149 15 60 chr4 5067169 5067207 -197261140 - Tigger3(Golem) DNA MER2_type -138 2891 2856 2830 3 0 0 chr4 5067207 5067519 -197260828 + AluYb8 SINE Alu 1 312 -6 283 149 15 60 chr4 5067519 5067547 -197260800 - Tigger3(Golem) DNA MER2_type -173 2856 2828 447 228 33 0 chr4 5068122 5068214 -197260133 - MLT1J LTR MaLR -321 190 96 273 284 0 14 chr4 5068226 5068300 -197260047 + L2 LINE L2 3200 3272 0 244 309 128 0 chr4 5068391 5068485 -197259862 - MIR SINE MIR -3 259 154 1570 266 93 70 chr4 5068537 5069010 -197259337 + L2 LINE L2 2061 2522 -791 1578 181 3 19 chr4 5069010 5069320 -197259027 + AluJb SINE Alu 5 309 -3 1570 266 93 70 chr4 5069320 5069831 -197258516 + L2 LINE L2 2522 3066 -247 3510 111 14 2 chr4 5069831 5070338 -197258009 - L1PA8A LINE L1 -1530 4616 4104 6487 88 2 2 chr4 5070351 5071860 -197256487 + L1PA8A LINE L1 4596 6130 -1 237 310 14 0 chr4 5071961 5072032 -197256315 - L2 LINE L2 0 3313 3242 768 198 213 55 chr4 5072156 5072504 -197255843 + MLT1C LTR MaLR 7 409 -58 2032 114 19 13 chr4 5072504 5072679 -197255668 - AluSx SINE Alu -3 309 130 2058 113 17 3 chr4 5072679 5072979 -197255368 - AluSq SINE Alu -9 304 1 2032 114 19 13 chr4 5072979 5073110 -197255237 - AluSx SINE Alu -182 130 1 462 256 125 30 chr4 5073115 5073283 -197255064 + MIR SINE MIR 48 231 -31 1144 97 0 0 chr4 5073571 5073725 -197254622 - AluSg/x SINE Alu -4 306 153 2109 85 64 5 chr4 5073736 5074097 -197254250 - LTR7 LTR ERV1 0 450 25 1037 139 6 6 chr4 5074097 5074269 -197254078 - AluSq SINE Alu -141 172 1 490 264 35 39 chr4 5074282 5074466 -197253881 - MIR SINE MIR -72 136 3 419 229 50 57 chr4 5074564 5074704 -197253643 - MIR SINE MIR -10 252 114 252 0 0 0 chr4 5074794 5074822 -197253525 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 270 193 72 48 chr4 5075305 5075388 -197252959 + MIR3 SINE MIR 87 171 -37 204 330 0 10 chr4 5075788 5075885 -197252462 + CT-rich Low_complexity Low_complexity 1 96 0 392 243 14 62 chr4 5076971 5077115 -197251232 + MIR SINE MIR 80 216 -46 195 293 98 9 chr4 5077219 5077407 -197250940 - MIR SINE MIR -2 260 12 2116 79 14 0 chr4 5078083 5078398 -197249949 + AluSq SINE Alu 1 319 0 350 330 75 74 chr4 5078524 5079078 -197249269 - L2 LINE L2 0 3272 2715 412 209 9 43 chr4 5079301 5079416 -197248931 + HsTC2 DNA Tc2 1783 1893 -5 653 264 22 33 chr4 5079888 5080070 -197248277 - MIR SINE MIR -48 214 35 185 194 0 0 chr4 5080153 5080189 -197248158 - L2 LINE L2 -16 3256 3221 438 265 75 90 chr4 5080261 5080593 -197247754 - MLT1J LTR MaLR -75 436 110 543 232 113 33 chr4 5080625 5080776 -197247571 + MER5A DNA MER1_type 1 163 -26 446 255 47 0 chr4 5081200 5081306 -197247041 + MER81 DNA DNA 2 112 -2 401 277 37 28 chr4 5082215 5082412 -197245935 - MIR SINE MIR -6 256 18 269 295 13 26 chr4 5083129 5083207 -197245140 - L2 LINE L2 0 3272 3196 455 294 88 44 chr4 5083213 5083485 -197244862 - L2 LINE L2 0 3313 3030 374 275 181 28 chr4 5083564 5083917 -197244430 - L2 LINE L2 -462 2852 2446 191 188 0 0 chr4 5085202 5085234 -197243113 - MIR SINE MIR -107 155 124 776 153 11 17 chr4 5085373 5085550 -197242797 + GA-rich Low_complexity Low_complexity 3 178 0 290 203 16 0 chr4 5085734 5085798 -197242549 + MIR SINE MIR 61 125 -137 402 268 109 55 chr4 5085798 5086018 -197242329 + Charlie8 DNA MER1_type 1 232 -2185 226 383 9 9 chr4 5086167 5086282 -197242065 + L2 LINE L2 2946 3060 -212 185 150 0 25 chr4 5086389 5086429 -197241918 + (CA)n Simple_repeat Simple_repeat 2 40 0 1753 179 152 29 chr4 5086498 5086946 -197241401 + MLT1D LTR MaLR 1 503 -2 353 282 52 69 chr4 5087147 5087321 -197241026 + MIR SINE MIR 20 190 -72 1040 270 72 17 chr4 5087631 5088076 -197240271 + MLT1H LTR MaLR 28 549 0 587 278 139 10 chr4 5088775 5088984 -197239363 + MIR SINE MIR 20 255 -7 22 0 0 0 chr4 5089532 5089554 -197238793 + AT_rich Low_complexity Low_complexity 1 22 0 269 224 37 82 chr4 5089764 5089898 -197238449 - L1ME4a LINE L1 -21 6100 5973 241 349 9 0 chr4 5090113 5090219 -197238128 + L2 LINE L2 3206 3312 -1 1890 150 0 0 chr4 5090242 5090529 -197237818 - AluSx SINE Alu -25 287 1 285 318 56 24 chr4 5090826 5090952 -197237395 + L2 LINE L2 3142 3271 -1 1331 126 0 11 chr4 5091011 5091202 -197237145 - Tigger2 DNA MER2_type -1 2717 2529 1562 181 0 7 chr4 5091210 5091486 -197236861 - AluJo SINE Alu -33 279 6 3414 128 65 5 chr4 5091489 5092043 -197236304 - Tigger2 DNA MER2_type -1572 1146 560 821 206 16 27 chr4 5092159 5092343 -197236004 + MLT1C LTR MaLR 286 467 0 286 313 52 10 chr4 5092373 5092469 -197235878 - MIR3 SINE MIR 0 208 109 206 289 52 41 chr4 5092884 5092981 -197235366 - L3 LINE CR1 -1471 106 9 290 256 35 0 chr4 5093172 5093258 -197235089 + MLT1K LTR MaLR 153 241 -347 1814 234 48 87 chr4 5093447 5094070 -197234277 + L1ME3A LINE L1 5546 6144 -26 313 318 129 30 chr4 5094097 5094330 -197234017 + L3 LINE CR1 1191 1446 -131 711 299 45 9 chr4 5094933 5095157 -197233190 - MIR SINE MIR -29 233 2 297 311 112 13 chr4 5095205 5095356 -197232991 - MIR SINE MIR -52 156 14 273 311 46 48 chr4 5095602 5095768 -197232579 + MIR SINE MIR 49 216 -46 458 202 67 29 chr4 5095904 5096008 -197232339 - L2 LINE L2 -8 3305 3198 342 269 175 29 chr4 5096065 5096236 -197232111 - MIR SINE MIR -14 248 53 213 225 14 28 chr4 5096363 5096434 -197231913 + (CAGGT)n Simple_repeat Simple_repeat 5 74 0 537 265 25 15 chr4 5097435 5097635 -197230712 + L1ME2 LINE L1 2141 2342 -3804 3518 250 57 24 chr4 5097695 5100078 -197228269 + L1ME2 LINE L1 2271 4880 -1266 1660 209 37 92 chr4 5100079 5100653 -197227694 + MLT2B3 LTR ERVL 1 542 -12 676 220 81 52 chr4 5100719 5101101 -197227246 + L1ME2 LINE L1 4942 5334 -812 781 223 53 75 chr4 5101102 5101421 -197226926 + L1ME2 LINE L1 5843 6154 -10 362 329 56 31 chr4 5101780 5101941 -197226406 + L2 LINE L2 3086 3250 -22 459 52 0 0 chr4 5101944 5102002 -197226345 + (TGGA)n Simple_repeat Simple_repeat 1 58 0 407 288 72 0 chr4 5102403 5102542 -197225805 - MIR SINE MIR -3 259 111 2183 178 17 19 chr4 5103583 5103627 -197224720 - MLT2D LTR ERVL 0 414 371 417 81 0 0 chr4 5103627 5103689 -197224658 + (CAGA)n Simple_repeat Simple_repeat 3 64 0 2183 178 17 19 chr4 5103689 5104059 -197224288 - MLT2D LTR ERVL -43 371 1 304 317 28 7 chr4 5104865 5105010 -197223337 + MLT1L LTR MaLR 338 485 -130 951 275 116 40 chr4 5105049 5105529 -197222818 + L2 LINE L2 2516 3074 -239 1040 164 19 14 chr4 5105529 5105736 -197222611 + MER3 DNA MER1_type 2 209 0 951 275 116 40 chr4 5105736 5105996 -197222351 + L2 LINE L2 3074 3313 0 458 316 80 30 chr4 5107146 5107383 -197220964 + L2 LINE L2 2243 2491 -823 1218 275 92 49 chr4 5107538 5109113 -197219234 - L1MEc LINE L1 -3372 2708 1001 225 94 0 0 chr4 5109113 5109145 -197219202 + (TG)n Simple_repeat Simple_repeat 1 32 0 1218 275 92 49 chr4 5109145 5109512 -197218835 - L1MEc LINE L1 -5079 1001 651 252 235 0 0 chr4 5109618 5109686 -197218661 - L1MEc LINE L1 -5162 908 841 273 273 0 122 chr4 5109860 5110032 -197218315 - L1MEc LINE L1 -5551 519 369 353 217 11 11 chr4 5110823 5110915 -197217432 - MLT1G LTR MaLR 0 590 499 373 295 30 42 chr4 5111215 5111452 -197216895 - L1ME LINE L1 -298 5823 5590 327 323 24 8 chr4 5111995 5112119 -197216228 + L2 LINE L2 3187 3312 -1 231 323 32 0 chr4 5112361 5112454 -197215893 - MER117 DNA MER1_type -87 110 15 927 286 78 30 chr4 5112772 5113234 -197215113 - MLT1L LTR MaLR -9 606 123 431 304 46 11 chr4 5114078 5114341 -197214006 - L1ME LINE L1 -301 5820 5549 1259 180 0 86 chr4 5114648 5114975 -197213372 - L1MA9 LINE L1 -277 6035 5737 * 3300 250 62 34 chr4 5114974 5116240 -197212107 - L1M2 LINE L1 -4469 1742 456 609 278 140 36 chr4 5116425 5116903 -197211444 - L1ME4a LINE L1 -1 6120 5593 391 289 71 47 chr4 5117088 5117299 -197211048 + MIR SINE MIR 35 250 -12 1973 149 3 3 chr4 5117471 5117767 -197210580 - AluSx SINE Alu -16 296 1 470 260 133 17 chr4 5118047 5118228 -197210119 + MIR SINE MIR 47 248 -14 205 176 0 0 chr4 5118328 5118362 -197209985 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 253 331 99 8 chr4 5118579 5118700 -197209647 + L2 LINE L2 3171 3302 -11 375 273 123 68 chr4 5118888 5119181 -197209166 + LTR16A1 LTR ERVL 147 455 -2 276 300 0 0 chr4 5119322 5119402 -197208945 - MIR SINE MIR -70 138 59 225 19 0 113 chr4 5119420 5119473 -197208874 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 2249 126 0 0 chr4 5119479 5119788 -197208559 - AluSg SINE Alu 0 310 2 2246 181 22 84 chr4 5119893 5120440 -197207907 + MLT2B2 LTR ERVL 3 515 0 261 0 0 0 chr4 5120725 5120754 -197207593 + (TG)n Simple_repeat Simple_repeat 1 29 0 640 290 6 0 chr4 5122021 5122197 -197206150 + MER58A DNA MER1_type 3 179 -45 2488 113 5 24 chr4 5122242 5122613 -197205734 + THE1B LTR MaLR 1 364 0 597 178 0 52 chr4 5123014 5123149 -197205198 - MLT1I LTR MaLR -2 407 280 303 325 180 0 chr4 5123448 5123642 -197204705 - MIR SINE MIR -13 249 21 1836 193 0 7 chr4 5124240 5124545 -197203802 - AluJo SINE Alu -9 303 1 336 161 0 0 chr4 5125225 5125287 -197203060 + CT-rich Low_complexity Low_complexity 6 67 0 243 313 87 35 chr4 5125585 5125700 -197202647 + L2 LINE L2 3127 3247 -25 417 224 9 19 chr4 5125819 5125926 -197202421 - AluJb SINE Alu -14 298 193 372 252 57 32 chr4 5126039 5126162 -197202185 + L2 LINE L2 2622 2747 -567 409 281 104 48 chr4 5126550 5126804 -197201543 - L1M4 LINE L1 -918 5228 4990 2237 115 131 11 chr4 5126804 5127186 -197201161 + MSTA LTR MaLR 1 428 0 409 281 104 48 chr4 5127186 5127394 -197200953 - L1M4 LINE L1 -1156 4990 4740 335 298 63 99 chr4 5128507 5128809 -197199538 - L3 LINE CR1 -2 1575 1285 1012 191 5 11 chr4 5128842 5129031 -197199316 - MER5A DNA MER1_type -1 188 1 330 300 67 110 chr4 5129060 5129477 -197198870 - L2 LINE L2 -39 3233 2835 470 274 20 13 chr4 5130868 5131021 -197197326 - MLT1I LTR MaLR -399 156 3 243 250 0 0 chr4 5131023 5131075 -197197272 - L2 LINE L2 -599 2715 2664 287 348 129 0 chr4 5131190 5131391 -197196956 - L2 LINE L2 -608 2706 2480 201 292 135 0 chr4 5132429 5132518 -197195829 - MIR SINE MIR -141 121 21 483 339 81 30 chr4 5133143 5133441 -197194906 - L2 LINE L2 0 3272 2960 359 331 140 29 chr4 5133477 5133755 -197194592 - L2 LINE L2 -450 2864 2556 923 212 33 113 chr4 5134518 5134560 -197193787 + MLT1A1 LTR MaLR 1 45 -320 1724 111 0 0 chr4 5134560 5134785 -197193562 + AluSc SINE Alu 77 301 -8 923 212 33 113 chr4 5134785 5135139 -197193208 + MLT1A1 LTR MaLR 45 365 0 6880 209 65 35 chr4 5135139 5136440 -197191907 + MLT1A1-int LTR MaLR 1 1365 -370 2480 69 0 13 chr4 5136440 5136744 -197191603 + AluY SINE Alu 1 300 -11 6880 209 65 35 chr4 5136744 5137127 -197191220 + MLT1A1-int LTR MaLR 1365 1735 0 254 297 79 10 chr4 5137738 5137839 -197190508 + MIR SINE MIR 150 257 -5 435 228 24 0 chr4 5137922 5138045 -197190302 - Charlie1 DNA MER1_type 0 2761 2636 1974 115 44 0 chr4 5138045 5138342 -197190005 + AluSx SINE Alu 1 309 0 349 186 0 0 chr4 5138396 5138455 -197189892 + MER44D DNA MER2_type 2 60 -645 2481 196 24 29 chr4 5139257 5139809 -197188538 + MER44D DNA MER2_type 2 605 0 3756 275 119 22 chr4 5139816 5141334 -197187013 - Charlie1 DNA MER1_type -180 2581 917 1117 114 14 55 chr4 5141342 5141451 -197186896 - Tigger1 DNA MER2_type -8 2410 2313 2121 125 3 0 chr4 5141451 5141747 -197186600 + AluSq SINE Alu 1 297 -16 1117 114 14 55 chr4 5141747 5141857 -197186490 - Tigger1 DNA MER2_type -105 2313 2200 584 211 0 32 chr4 5141853 5141976 -197186371 - Tigger1 DNA MER2_type -2279 139 21 * 1801 212 76 58 chr4 5141973 5142066 -197186281 - Charlie1 DNA MER1_type -1832 929 839 616 157 20 0 chr4 5142066 5142168 -197186179 + L1PB4 LINE L1 6041 6144 -12 1801 212 76 58 chr4 5142168 5142749 -197185598 - Charlie1 DNA MER1_type -1922 839 243 831 151 0 22 chr4 5142749 5142888 -197185459 - AluSp/q SINE Alu -4 309 174 724 229 82 26 chr4 5142888 5142944 -197185403 - Charlie1 DNA MER1_type -2509 252 201 2317 113 3 0 chr4 5142944 5143255 -197185092 - AluSx SINE Alu 0 312 1 724 229 82 26 chr4 5143255 5143429 -197184918 - Charlie1 DNA MER1_type -2560 201 9 243 232 219 66 chr4 5143920 5144071 -197184276 + L2 LINE L2 3099 3272 0 2057 142 0 13 chr4 5144095 5144411 -197183936 + AluSx SINE Alu 1 312 0 435 273 8 0 chr4 5144743 5144864 -197183483 - L2 LINE L2 -1 3271 3150 1100 216 117 40 chr4 5144884 5145337 -197183010 - Charlie4a DNA MER1_type -20 488 1 324 284 12 12 chr4 5145631 5145793 -197182554 + L1ME4a LINE L1 5705 5866 -255 24 0 0 0 chr4 5146047 5146071 -197182276 + AT_rich Low_complexity Low_complexity 1 24 0 350 345 152 0 chr4 5146398 5146589 -197181758 + MIR SINE MIR 15 234 -28 334 184 102 20 chr4 5146639 5146737 -197181610 - MER103 DNA DNA -56 110 5 2938 240 83 20 chr4 5146881 5147709 -197180638 + L1MB7 LINE L1 8 887 -5655 * 3149 230 64 18 chr4 5147699 5149540 -197178807 + L1MB7 LINE L1 1439 3477 -3167 1222 91 22 4 chr4 5149537 5149809 -197178538 + L1MA2 LINE L1 5909 6224 -80 * 1523 116 13 0 chr4 5149809 5150042 -197178305 + L1MA2 LINE L1 6069 6304 0 2243 252 18 31 chr4 5150049 5150490 -197177857 + L1MB7 LINE L1 3461 3891 -2753 6307 71 8 21 chr4 5150490 5151651 -197176696 - L1PA8A LINE L1 0 6131 5007 2311 86 41 0 chr4 5151651 5151943 -197176404 - AluY SINE Alu -7 304 1 6307 71 8 21 chr4 5151943 5152156 -197176191 - L1PA8A LINE L1 -1124 5007 4793 2243 252 18 31 chr4 5152156 5152433 -197175914 + L1MB7 LINE L1 3891 4170 -2474 3735 184 47 34 chr4 5152439 5153488 -197174859 + L1MB7 LINE L1 5575 6631 -51 1353 163 50 48 chr4 5153488 5153529 -197174818 - MSTA LTR MaLR 0 364 325 2309 99 0 10 chr4 5153529 5153841 -197174506 + AluSx SINE Alu 1 309 -3 1353 163 50 48 chr4 5153841 5154171 -197174176 - MSTA LTR MaLR -39 325 1 2587 142 36 11 chr4 5154277 5154722 -197173625 + Tigger2 DNA MER2_type 3 458 -2260 881 19 9 0 chr4 5154722 5154828 -197173519 + L1PA4 LINE L1 5872 5978 -177 759 189 0 0 chr4 5155229 5155445 -197172902 + (CTCA)n Simple_repeat Simple_repeat 1 216 0 858 175 0 0 chr4 5155451 5155628 -197172719 + (TTCA)n Simple_repeat Simple_repeat 3 179 0 879 189 0 8 chr4 5155636 5155901 -197172446 + (CTCA)n Simple_repeat Simple_repeat 1 262 0 2086 170 18 5 chr4 5156655 5157038 -197171309 - MLT1B LTR MaLR -2 388 1 183 80 0 0 chr4 5157047 5157072 -197171275 + (CCA)n Simple_repeat Simple_repeat 1 25 0 254 228 0 76 chr4 5157123 5157215 -197171132 - MIR SINE MIR -14 248 164 191 235 0 29 chr4 5157876 5157944 -197170403 + (TATG)n Simple_repeat Simple_repeat 1 66 0 1483 246 46 7 chr4 5158122 5158555 -197169792 + MLT1E2 LTR MaLR 138 626 0 848 279 66 0 chr4 5159152 5159424 -197168923 - L1M4 LINE L1 -1186 4960 4671 211 304 0 0 chr4 5159471 5159527 -197168820 + CT-rich Low_complexity Low_complexity 2 57 0 1438 230 68 20 chr4 5160735 5160941 -197167406 + MLT1C LTR MaLR 53 248 -219 2796 94 3 0 chr4 5160941 5161304 -197167043 + THE1B LTR MaLR 1 364 0 1438 230 68 20 chr4 5161304 5161493 -197166854 + MLT1C LTR MaLR 248 467 0 21 0 0 0 chr4 5162429 5162450 -197165897 + AT_rich Low_complexity Low_complexity 1 21 0 210 232 54 0 chr4 5162896 5162952 -197165395 - MIR SINE MIR -75 187 129 960 261 54 51 chr4 5163086 5163643 -197164704 - L2 LINE L2 -5 3308 2739 672 315 25 36 chr4 5164631 5165023 -197163324 + L2 LINE L2 2703 3091 -222 753 214 60 11 chr4 5165045 5165227 -197163120 + MLT1D LTR MaLR 1 191 -314 1708 117 29 4 chr4 5165227 5165501 -197162846 - L1PA15 LINE L1 -261 5904 5624 1152 150 117 0 chr4 5165481 5165694 -197162653 + L1PA15 LINE L1 5917 6154 -11 * 969 210 210 4 chr4 5165694 5165966 -197162381 + MLT1D LTR MaLR 178 505 0 315 102 0 85 chr4 5165999 5166058 -197162289 - Alu SINE Alu -6 295 242 256 289 0 0 chr4 5166285 5166361 -197161986 + MLT1C LTR MaLR 392 467 0 268 341 44 22 chr4 5166367 5166394 -197161953 + L2 LINE L2 3113 3138 -175 2089 127 3 17 chr4 5166394 5166694 -197161653 - AluSx SINE Alu -16 296 1 268 341 44 22 chr4 5166694 5166848 -197161499 + L2 LINE L2 3138 3298 -15 257 208 0 0 chr4 5167291 5167359 -197160988 - MIR SINE MIR -63 145 77 194 323 50 20 chr4 5167461 5167560 -197160787 - MIR SINE MIR -109 153 52 270 282 26 0 chr4 5167671 5167749 -197160598 - MER102b DNA MER1_type -13 328 249 2086 174 50 21 chr4 5167804 5168183 -197160164 + MSTD LTR MaLR 7 396 0 427 278 67 51 chr4 5168553 5168866 -197159481 + L2 LINE L2 2940 3257 -56 284 295 11 11 chr4 5168875 5168970 -197159377 + (CATATA)n Simple_repeat Simple_repeat 5 99 0 2007 106 81 34 chr4 5168984 5169341 -197159006 + THE1C LTR MaLR 2 375 0 280 199 18 41 chr4 5169382 5169553 -197158794 + (CATATA)n Simple_repeat Simple_repeat 2 168 0 229 220 0 0 chr4 5169561 5169611 -197158736 - L1MC4 LINE L1 -1341 6701 6652 290 209 18 45 chr4 5169646 5169778 -197158569 + (CATATA)n Simple_repeat Simple_repeat 1 128 0 189 0 0 0 chr4 5170749 5170770 -197157577 + (A)n Simple_repeat Simple_repeat 1 21 0 448 270 101 64 chr4 5170775 5171071 -197157276 - L2 LINE L2 -88 3225 2919 223 218 55 0 chr4 5171101 5171156 -197157191 + L2 LINE L2 3201 3258 -14 229 234 172 0 chr4 5171234 5171298 -197157049 + MIR SINE MIR 48 122 -140 2128 151 29 0 chr4 5172027 5172405 -197155942 - MLT1B LTR MaLR -1 389 1 283 169 0 34 chr4 5172853 5172912 -197155435 - MLT2D LTR ERVL 0 520 464 229 150 0 0 chr4 5172891 5172931 -197155416 + LTR66 LTR ERVL 396 435 -175 * 320 253 38 0 chr4 5172932 5173011 -197155336 + L1MC4 LINE L1 6613 6694 -1348 342 242 0 42 chr4 5173015 5173110 -197155237 + L1MC4 LINE L1 6613 6703 -1339 315 269 0 21 chr4 5173113 5173206 -197155141 + L1MC4 LINE L1 6613 6703 -1339 216 185 0 0 chr4 5173208 5173262 -197155085 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 1292 235 34 6 chr4 5173294 5173617 -197154730 - MLT2D LTR ERVL -82 332 1 277 266 0 0 chr4 5173757 5173821 -197154526 - MIR SINE MIR -80 182 119 416 305 134 21 chr4 5174094 5174422 -197153925 - L2 LINE L2 0 3313 2949 222 313 16 0 chr4 5174566 5174630 -197153717 + L2 LINE L2 3203 3267 -5 367 269 60 15 chr4 5174741 5174875 -197153472 - MLT1L LTR MaLR 0 615 476 262 252 33 105 chr4 5174865 5175073 -197153274 - MLT1J LTR MaLR -185 391 212 * 387 0 0 0 chr4 5176988 5177031 -197151316 + (TG)n Simple_repeat Simple_repeat 2 44 0 1406 221 30 29 chr4 5177561 5177936 -197150411 - MLT1C LTR MaLR -22 604 69 692 251 16 5 chr4 5177936 5178123 -197150224 - MLT1A2 LTR MaLR 0 374 186 251 227 120 0 chr4 5178136 5178211 -197150136 - MIR SINE MIR -129 133 50 263 270 81 18 chr4 5178406 5178517 -197149830 - MIR3 SINE MIR -76 132 15 254 173 0 19 chr4 5179757 5179809 -197148538 + MIR SINE MIR 106 156 -106 1536 244 73 5 chr4 5179996 5180406 -197147941 + MLT1C LTR MaLR 21 458 -9 276 304 144 31 chr4 5180834 5181028 -197147319 + MIR SINE MIR 31 246 -16 936 288 104 18 chr4 5181086 5181538 -197146809 - LTR16C LTR ERVL 0 491 1 301 303 42 48 chr4 5181556 5181721 -197146626 + L2 LINE L2 3109 3272 0 225 244 0 0 chr4 5182878 5182923 -197145424 + L2 LINE L2 3213 3257 -15 448 259 85 80 chr4 5183397 5183795 -197144552 - L1ME4a LINE L1 -45 6076 5677 43999 45 3 0 chr4 5183918 5190045 -197138302 - L1PA4 LINE L1 0 6155 15 2229 141 0 0 chr4 5190048 5190353 -197137994 - AluSq SINE Alu -8 305 1 255 241 45 54 chr4 5190525 5190637 -197137710 + MIR SINE MIR 81 191 -71 2100 144 32 29 chr4 5190710 5191084 -197137263 - THE1C LTR MaLR 0 375 1 10256 126 37 3 chr4 5191084 5192612 -197135735 - THE1C-int LTR MaLR 0 1580 1 2178 123 24 39 chr4 5192612 5192993 -197135354 - THE1C LTR MaLR 0 375 1 1110 123 10 62 chr4 5193137 5193270 -197135077 - Tigger1 DNA MER2_type -1236 1182 1061 2256 105 3 13 chr4 5193270 5193585 -197134762 + AluSp SINE Alu 1 312 -1 1110 123 10 62 chr4 5193585 5193646 -197134701 - Tigger1 DNA MER2_type -1357 1061 998 448 161 62 0 chr4 5193653 5193734 -197134613 - Tigger1 DNA MER2_type -2062 356 271 4937 147 6 5 chr4 5193735 5194515 -197133832 - Tigger1 DNA MER2_type -1422 996 216 388 108 82 13 chr4 5194658 5194816 -197133531 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 246 279 105 0 chr4 5194898 5194984 -197133363 - MLT1K LTR MaLR -7 581 487 253 247 155 0 chr4 5195018 5195115 -197133232 - MLT1K LTR MaLR -181 407 296 267 295 29 79 chr4 5195134 5195273 -197133074 - MLT1K LTR MaLR -413 175 44 258 230 300 0 chr4 5195572 5195672 -197132675 - MIR SINE MIR -105 157 28 729 261 148 27 chr4 5196336 5196519 -197131828 + MLT1A2 LTR MaLR 1 160 -214 351 0 0 0 chr4 5196519 5196558 -197131789 + (CA)n Simple_repeat Simple_repeat 2 40 0 729 261 148 27 chr4 5196558 5196704 -197131643 + MLT1A2 LTR MaLR 160 370 -4 7257 128 34 16 chr4 5196731 5197641 -197130706 - Tigger1 DNA MER2_type 0 2418 1481 2375 95 10 0 chr4 5197641 5197947 -197130400 - AluSx SINE Alu -3 309 1 7257 128 34 16 chr4 5197947 5198200 -197130147 - Tigger1 DNA MER2_type -937 1481 1234 3282 107 32 6 chr4 5198392 5198858 -197129489 + MER1A DNA MER1_type 52 529 0 529 266 101 35 chr4 5198904 5199261 -197129086 - L1MC4a LINE L1 -621 7234 6884 1159 282 112 22 chr4 5199271 5199824 -197128523 - L1ME3A LINE L1 -4 6166 5564 463 291 89 24 chr4 5199809 5200056 -197128291 - L1ME3A LINE L1 -2448 3698 3436 * 217 325 26 26 chr4 5200543 5200660 -197127687 - MIR3 SINE MIR -2 206 90 186 103 0 0 chr4 5200666 5200695 -197127652 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 6575 197 25 20 chr4 5200866 5203152 -197125195 + L1PB4 LINE L1 3861 6156 0 1350 279 78 0 chr4 5203181 5203564 -197124783 - LTR16C LTR ERVL 0 491 79 1407 235 118 30 chr4 5203622 5204095 -197124252 - MLT2B2 LTR ERVL 0 515 1 280 277 204 0 chr4 5204267 5204404 -197123943 - L2 LINE L2 0 3313 3149 557 238 47 29 chr4 5204408 5204439 -197123908 + MLT1I LTR MaLR 232 261 -148 2406 164 6 6 chr4 5204439 5204804 -197123543 + MLT1A1 LTR MaLR 1 365 0 557 238 47 29 chr4 5204804 5204944 -197123403 + MLT1I LTR MaLR 261 406 -3 535 279 99 97 chr4 5205004 5205111 -197123236 + L2 LINE L2 2723 2828 -444 2462 104 16 65 chr4 5205111 5205494 -197122853 - THE1B LTR MaLR 0 364 1 535 279 99 97 chr4 5205494 5205943 -197122404 + L2 LINE L2 2828 3272 0 280 241 71 36 chr4 5207245 5207357 -197120990 + MIR SINE MIR 74 189 -73 201 74 0 0 chr4 5207563 5207590 -197120757 + (CA)n Simple_repeat Simple_repeat 1 27 0 717 199 7 21 chr4 5207617 5207758 -197120589 + MER45 DNA AcHobo 1 139 -1442 629 170 54 34 chr4 5207760 5207907 -197120440 - L1MA8 LINE L1 -14 6277 6128 4733 161 20 15 chr4 5207907 5208794 -197119553 - L1 LINE L1 -1379 4767 3876 295 259 64 59 chr4 5208813 5209033 -197119314 - L1MC/D LINE L1 -2332 5476 5256 3155 180 3 7 chr4 5209192 5209787 -197118560 - L1 LINE L1 -2249 3897 3305 443 318 74 52 chr4 5209787 5210193 -197118154 + L2 LINE L2 2876 3290 -23 690 176 6 80 chr4 5210310 5210486 -197117861 - MER106B DNA MER1_type -1 1058 896 200 347 68 32 chr4 5212133 5212323 -197116024 + L2 LINE L2 2862 3058 -214 281 266 145 24 chr4 5212522 5212646 -197115701 + MIR SINE MIR 40 178 -84 200 233 0 0 chr4 5212796 5212839 -197115508 + T-rich Low_complexity Low_complexity 1 43 0 331 316 66 15 chr4 5213272 5213408 -197114939 - MER5B DNA MER1_type -31 147 5 1873 140 90 36 chr4 5214049 5214405 -197113942 - THE1C LTR MaLR 0 375 1 3398 117 21 46 chr4 5214405 5214967 -197113380 - THE1C-int LTR MaLR 0 1580 1033 2778 54 0 9 chr4 5264967 5265298 -197063049 + L1PA5 LINE L1 5824 6151 -3 1776 163 21 0 chr4 5265756 5266039 -197062308 - AluSx SINE Alu -23 289 1 26 64 0 0 chr4 5266101 5266148 -197062199 + AT_rich Low_complexity Low_complexity 1 47 0 552 311 77 30 chr4 5266239 5266799 -197061548 - L1ME4a LINE L1 -206 5915 5330 2708 23 0 3 chr4 5266934 5267243 -197061104 - L1PA4 LINE L1 -312 5843 5536 1823 36 22 0 chr4 5267243 5267466 -197060881 + L1P LINE L1 4986 5213 -933 2281 81 0 7 chr4 5268339 5268636 -197059711 - L1P2 LINE L1 -383 5771 5477 1417 94 0 0 chr4 5268638 5268819 -197059528 + L1PA5 LINE L1 5970 6150 -4 1518 119 16 67 chr4 5268819 5269072 -197059275 + MSTA LTR MaLR 189 428 0 304 264 114 21 chr4 5269392 5269532 -197058815 + MIR SINE MIR 61 213 -49 333 321 9 9 chr4 5269612 5269724 -197058623 + MIR SINE MIR 4 115 -147 9497 27 13 0 chr4 5269970 5271867 -197056480 - L1PA4 LINE L1 -5 6150 4234 5175 132 17 11 chr4 5272194 5272745 -197055602 - L1PA15 LINE L1 -2 6163 5604 2309 115 0 0 chr4 5272745 5273050 -197055297 - AluSx SINE Alu -7 305 1 5175 132 17 11 chr4 5273050 5273302 -197055045 - L1PA15 LINE L1 -561 5604 5355 1667 253 87 31 chr4 5273425 5274381 -197053966 - L1M1 LINE L1 -4148 3417 2423 1658 155 33 39 chr4 5274375 5274711 -197053636 + L1MA7 LINE L1 5780 6113 -178 * 3147 168 73 16 chr4 5274711 5275276 -197053071 + MER44D DNA MER2_type 3 599 -106 502 263 32 5 chr4 5275289 5275422 -197052925 - MER2 DNA MER2_type -87 152 8 602 164 29 10 chr4 5275430 5275534 -197052813 + Tigger7 DNA MER2_type 2381 2486 -1 874 154 51 0 chr4 5275543 5275699 -197052648 + L1MA7 LINE L1 6123 6286 -5 4351 173 23 34 chr4 5275972 5276902 -197051445 - L1P LINE L1 -829 5317 4399 440 145 12 24 chr4 5277865 5277948 -197050399 - THE1C LTR MaLR -293 82 1 278 307 79 11 chr4 5277949 5278138 -197050209 - MER113 DNA MER1_type? -318 203 2 266 148 19 0 chr4 5279065 5279119 -197049228 + GA-rich Low_complexity Low_complexity 1 55 0 1184 247 50 15 chr4 5279693 5280094 -197048253 + HAL1 LINE L1 781 1195 -1312 2154 101 0 71 chr4 5280264 5280601 -197047746 + AluSq SINE Alu 1 313 0 1236 196 57 25 chr4 5280937 5281399 -197046948 - L1MC/D LINE L1 -749 5633 5258 2863 235 81 87 chr4 5281513 5281589 -197046758 - L1MC/D LINE L1 -1085 5297 5222 2229 110 0 0 chr4 5281589 5281881 -197046466 - AluSq SINE Alu -21 292 1 2863 235 81 87 chr4 5281881 5283115 -197045232 - L1MC/D LINE L1 -1160 5222 3995 2391 68 6 3 chr4 5283373 5283684 -197044663 + AluSx SINE Alu 1 312 0 875 276 85 65 chr4 5284171 5284631 -197043716 - MLT1J LTR MaLR -42 469 1 530 227 153 0 chr4 5284924 5285074 -197043273 + MIR SINE MIR 41 213 -49 298 210 49 0 chr4 5285074 5285155 -197043192 + MIR SINE MIR 129 213 -49 298 210 49 0 chr4 5285155 5285236 -197043111 + MIR SINE MIR 129 213 -49 323 262 71 8 chr4 5285236 5285362 -197042985 + MIR SINE MIR 129 262 0 310 319 60 64 chr4 5286499 5286734 -197041613 + MIR SINE MIR 28 261 -1 4825 98 0 12 chr4 5286868 5287528 -197040819 - L1P3 LINE L1 -5804 657 6 1669 206 27 0 chr4 5287666 5288039 -197040308 - L1 LINE L1 -1112 5034 4652 5653 190 10 22 chr4 5288042 5289217 -197039130 + L1 LINE L1 3470 4630 -1516 2698 236 48 38 chr4 5289227 5290177 -197038170 - L1 LINE L1 -2166 3980 3021 466 237 95 27 chr4 5290157 5290419 -197037928 - L1MC/D LINE L1 -3961 2423 2144 * 321 177 89 48 chr4 5290444 5290568 -197037779 - L1MC4 LINE L1 0 8042 7914 * 581 307 42 3 chr4 5290551 5290857 -197037490 - L1M4 LINE L1 -947 5199 4882 3333 115 8 123 chr4 5290890 5291540 -197036807 - L1PB2 LINE L1 -7 6144 5570 5554 217 9 12 chr4 5291640 5292890 -197035457 - L1PB2 LINE L1 -906 5240 3995 2061 63 7 7 chr4 5292994 5293263 -197035084 - AluSx SINE Alu -29 283 15 1577 158 31 54 chr4 5293263 5293580 -197034767 - MER31B LTR ERV1 -156 310 1 692 265 64 15 chr4 5293703 5293907 -197034440 - MER58A DNA MER1_type -9 215 2 972 239 80 84 chr4 5295257 5295691 -197032656 - MLT2B1 LTR ERVL -8 512 71 1153 205 216 3 chr4 5295960 5296335 -197032012 + MLT1C LTR MaLR 10 464 -3 1031 227 58 73 chr4 5296338 5296517 -197031830 + MER113 DNA MER1_type? 32 212 -309 1568 213 56 34 chr4 5296517 5296874 -197031473 - MLT1A1 LTR MaLR 0 365 1 1031 227 58 73 chr4 5296874 5297091 -197031256 + MER113 DNA MER1_type? 212 422 -99 30547 109 10 15 chr4 5297280 5302919 -197025428 + L1PA8 LINE L1 845 6487 0 3079 152 12 44 chr4 5302919 5303702 -197024645 + L1PA16 LINE L1 5031 5783 -383 790 144 68 0 chr4 5303702 5303833 -197024514 + L1PA16 LINE L1 6025 6165 -1 2749 241 75 15 chr4 5303836 5303879 -197024468 + L1MB7 LINE L1 3973 4012 -2134 202 0 91 0 chr4 5303879 5303912 -197024435 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2749 241 75 15 chr4 5303912 5304740 -197023607 + L1MB7 LINE L1 4012 4896 -1250 640 276 60 0 chr4 5304747 5304997 -197023350 - L1M4 LINE L1 -1456 4690 4426 237 213 0 0 chr4 5305002 5305049 -197023298 + L1PA12 LINE L1 6116 6162 -6 28 29 0 0 chr4 5305066 5305101 -197023246 + AT_rich Low_complexity Low_complexity 1 35 0 530 221 39 0 chr4 5305102 5305206 -197023141 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 1598 117 55 16 chr4 5305193 5305500 -197022847 + Tigger3(Golem) DNA MER2_type 2274 2592 -437 240 167 0 0 chr4 5305500 5305542 -197022805 - L1PA13 LINE L1 -6343 444 403 2023 122 0 0 chr4 5305552 5305838 -197022509 + L1PA15 LINE L1 5879 6164 -1 1710 58 0 108 chr4 5305845 5306103 -197022244 + AluY SINE Alu 1 230 -81 356 275 0 0 chr4 5306103 5306194 -197022153 - L1ME LINE L1 -699 5465 5375 252 89 44 0 chr4 5306205 5306250 -197022097 + Alu SINE Alu 254 300 0 * 2716 150 48 17 chr4 5306230 5306689 -197021658 + Tigger3(Golem) DNA MER2_type 2557 3029 0 3936 191 58 36 chr4 5306689 5307939 -197020408 + L1MB7 LINE L1 4899 6175 -9 306 217 28 85 chr4 5307949 5308055 -197020292 + L1MC4a LINE L1 5880 5979 -1829 2164 227 88 64 chr4 5308236 5308595 -197019752 + L1ME3A LINE L1 5317 5666 -504 2462 73 0 0 chr4 5308595 5308896 -197019451 + AluSg SINE Alu 1 301 -9 2164 227 88 64 chr4 5308896 5309361 -197018986 + L1ME3A LINE L1 5666 6161 -9 1607 117 68 19 chr4 5309490 5309755 -197018592 - MLT1B LTR MaLR 0 390 113 1457 150 31 8 chr4 5310198 5310452 -197017895 - Tigger2 DNA MER2_type -1 2717 2458 2410 129 47 3 chr4 5310505 5310870 -197017477 - Tigger2 DNA MER2_type -1966 752 372 1816 99 8 4 chr4 5310973 5311226 -197017121 - L1PA8 LINE L1 -51 6121 5868 1949 126 136 79 chr4 5311256 5311621 -197016726 + MSTA LTR MaLR 1 393 -35 2192 123 0 13 chr4 5311621 5311930 -197016417 - AluSx SINE Alu -7 305 1 1949 126 136 79 chr4 5311930 5311969 -197016378 + MSTA LTR MaLR 393 428 0 9112 146 56 22 chr4 5311971 5313498 -197014849 + MSTA-int LTR MaLR 3 1580 0 2096 141 147 8 chr4 5313498 5313873 -197014474 + MSTA LTR MaLR 1 427 -1 993 308 51 45 chr4 5313895 5314404 -197013943 - L1MEd LINE L1 -5596 523 12 188 234 21 0 chr4 5314605 5314652 -197013695 - L2 LINE L2 0 3313 3266 2010 121 4 4 chr4 5316464 5316769 -197011578 - AluSx SINE Alu 0 305 1 719 145 69 0 chr4 5316772 5316903 -197011444 + L1MB2 LINE L1 6028 6167 -4 359 252 17 17 chr4 5316911 5317026 -197011321 + MIR SINE MIR 135 249 -13 1209 87 0 0 chr4 5317030 5317179 -197011168 - AluSg SINE Alu -161 149 1 956 264 97 19 chr4 5317299 5317834 -197010513 - L1M4 LINE L1 -2803 3343 2767 260 287 121 45 chr4 5318052 5318209 -197010138 - L2 LINE L2 0 3272 3104 1491 253 55 30 chr4 5318523 5319032 -197009315 - L1ME3 LINE L1 -1 6161 5640 315 281 26 18 chr4 5319184 5319298 -197009049 - MIR3 SINE MIR -24 184 70 236 271 169 34 chr4 5319933 5320051 -197008296 + L2 LINE L2 3139 3272 0 720 222 0 0 chr4 5320052 5320306 -197008041 + (TGAG)n Simple_repeat Simple_repeat 1 254 0 933 172 0 0 chr4 5320342 5320522 -197007825 + (TGAG)n Simple_repeat Simple_repeat 1 180 0 333 273 206 5 chr4 5320547 5320741 -197007606 + L2 LINE L2 2536 2768 -546 2187 128 0 6 chr4 5320753 5321066 -197007281 + AluSx SINE Alu 1 311 -1 201 291 96 8 chr4 5321072 5321260 -197007087 + MIR SINE MIR 16 260 -2 281 272 278 12 chr4 5321339 5321512 -197006835 + MIR SINE MIR 35 253 -9 1378 267 132 16 chr4 5321632 5322436 -197005911 + L2 LINE L2 2420 3288 -25 850 303 16 28 chr4 5322482 5322736 -197005611 + MIR SINE MIR 2 252 -10 309 293 98 62 chr4 5322860 5323085 -197005262 - L2 LINE L2 -115 3157 2925 303 140 0 0 chr4 5323161 5323211 -197005136 + (CA)n Simple_repeat Simple_repeat 2 51 0 455 341 96 47 chr4 5323384 5323812 -197004535 - L2 LINE L2 -1 3271 2823 1647 233 31 46 chr4 5323815 5324271 -197004076 - LTR16A LTR ERVL 0 450 2 348 359 84 20 chr4 5324303 5324554 -197003793 - L2 LINE L2 -502 2812 2546 355 230 58 0 chr4 5324657 5324744 -197003603 - MIR SINE MIR -122 140 49 302 138 17 0 chr4 5324828 5324886 -197003461 + (TTA)n Simple_repeat Simple_repeat 2 60 0 279 241 123 92 chr4 5325404 5325440 -197002907 + L1ME4a LINE L1 5795 5828 -293 2450 58 3 0 chr4 5325440 5325735 -197002612 + AluY SINE Alu 2 297 -14 279 241 123 92 chr4 5325735 5326014 -197002333 + L1ME4a LINE L1 5828 6120 -1 2735 235 81 36 chr4 5326829 5327599 -197000748 - L1ME2 LINE L1 -66 6098 5241 2449 61 0 3 chr4 5327599 5327896 -197000451 + AluY SINE Alu 1 296 -15 2735 235 81 36 chr4 5327896 5328300 -197000047 - L1ME2 LINE L1 -923 5241 4857 375 362 82 15 chr4 5328300 5328496 -196999851 - LTR16C LTR ERVL -197 294 86 370 237 65 47 chr4 5328948 5329180 -196999167 - L1ME LINE L1 -303 5818 5583 225 276 17 138 chr4 5330619 5330735 -196997612 - MIR SINE MIR -58 150 49 444 311 66 59 chr4 5331357 5331628 -196996719 + L2 LINE L2 2858 3134 -179 419 0 20 0 chr4 5331628 5331679 -196996668 + (TG)n Simple_repeat Simple_repeat 2 53 0 444 311 66 59 chr4 5331679 5331815 -196996532 + L2 LINE L2 3134 3268 -45 2848 249 142 11 chr4 5331876 5332856 -196995491 + L1MEc LINE L1 34 1141 -5255 2600 231 66 57 chr4 5332845 5333219 -196995128 + L1M4 LINE L1 3604 3973 -2173 * 3641 83 13 0 chr4 5333219 5333666 -196994681 - MLT2A2 LTR ERVL 0 453 1 2600 231 66 57 chr4 5333666 5334053 -196994294 + L1M4 LINE L1 3973 4378 -1768 2056 115 11 4 chr4 5334053 5334331 -196994016 - AluSg SINE Alu -30 280 1 2600 231 66 57 chr4 5334331 5334504 -196993843 + L1M4 LINE L1 4378 4548 -1598 * 10300 26 0 0 chr4 5334502 5335687 -196992660 - L1PA2 LINE L1 -1397 4749 3565 8370 14 1 0 chr4 5335687 5337099 -196991248 + L1PA2 LINE L1 4743 6155 0 1378 221 34 0 chr4 5337123 5337445 -196990902 + L1M4 LINE L1 4533 4865 -1281 223 173 19 192 chr4 5337446 5337520 -196990827 - L2 LINE L2 -93 3220 3167 6388 60 18 15 chr4 5337520 5338298 -196990049 + LTR17 LTR ERV1 1 780 0 223 173 19 192 chr4 5338298 5338327 -196990020 - L2 LINE L2 -146 3167 3135 2258 114 0 0 chr4 5339101 5339400 -196988947 + AluSx SINE Alu 1 299 -13 227 387 124 13 chr4 5339723 5339948 -196988399 - L2 LINE L2 -339 2975 2726 201 349 19 0 chr4 5339969 5340075 -196988272 - L2 LINE L2 -299 2973 2866 2229 91 0 17 chr4 5340149 5340447 -196987900 - AluY SINE Alu -18 293 1 339 340 27 0 chr4 5340447 5340594 -196987753 - MIR SINE MIR 0 262 112 384 293 153 27 chr4 5340660 5340994 -196987353 + L2 LINE L2 2594 2969 -345 256 278 88 36 chr4 5341022 5341216 -196987131 - LTR67 LTR ERVL -2 555 352 303 260 42 31 chr4 5341271 5341367 -196986980 - LTR67 LTR ERVL -369 188 92 245 279 72 27 chr4 5341520 5341631 -196986716 + L2 LINE L2 3182 3297 -16 355 178 55 0 chr4 5341723 5341796 -196986551 - MER116 DNA Mariner 0 80 4 433 254 54 15 chr4 5342453 5342583 -196985764 + MIR SINE MIR 79 213 -49 244 288 0 0 chr4 5342620 5342679 -196985668 + MIR SINE MIR 204 262 0 821 180 0 0 chr4 5343396 5343518 -196984829 + FLAM_C SINE Alu 2 123 -20 227 198 75 23 chr4 5344317 5344408 -196983939 + MIR SINE MIR 85 147 -61 257 294 88 0 chr4 5345069 5345171 -196983176 - L2 LINE L2 -26 3246 3136 742 279 12 59 chr4 5345225 5345415 -196982932 + MIR SINE MIR 21 198 -64 2061 146 0 0 chr4 5345415 5345717 -196982630 + AluSx SINE Alu 1 302 -10 742 279 12 59 chr4 5345717 5345780 -196982567 + MIR SINE MIR 198 262 0 214 289 0 0 chr4 5345790 5345842 -196982505 - L2 LINE L2 -191 3081 3030 1131 186 48 5 chr4 5345858 5346068 -196982279 - MER20 DNA MER1_type 0 219 1 27 0 0 0 chr4 5346940 5346967 -196981380 + AT_rich Low_complexity Low_complexity 1 27 0 13798 139 36 14 chr4 5347890 5350155 -196978192 - Tigger1 DNA MER2_type -81 2337 24 425 103 0 17 chr4 5350270 5350328 -196978019 + AluJ/FLAM SINE Alu 2 58 -254 319 317 60 12 chr4 5350910 5351077 -196977270 + L2 LINE L2 3096 3270 -2 481 208 285 27 chr4 5351516 5351776 -196976571 - MLT1G1 LTR MaLR -24 571 245 355 260 12 8 chr4 5352150 5352275 -196976072 + MIR3 SINE MIR 70 196 -12 828 264 57 31 chr4 5353202 5353554 -196974793 + HAL1 LINE L1 2 362 -2145 4528 44 2 0 chr4 5353571 5354090 -196974257 - L1PA3 LINE L1 -3 6152 5633 11417 35 1 1 chr4 5354190 5355572 -196972775 - L1PA3 LINE L1 -2076 4070 2689 1397 301 118 27 chr4 5355573 5356526 -196971821 + HAL1 LINE L1 360 1398 -1109 255 271 57 0 chr4 5356529 5356599 -196971748 + HAL1 LINE L1 1434 1507 -1000 1690 189 6 31 chr4 5356599 5356917 -196971430 - AluJb SINE Alu 0 312 3 1494 262 75 74 chr4 5356952 5357861 -196970486 + HAL1 LINE L1 1596 2505 -2 2912 185 24 2 chr4 5358469 5358978 -196969369 + MLT2B1 LTR ERVL 1 520 0 257 192 0 39 chr4 5359222 5359274 -196969073 + MARNA DNA Mariner 64 113 -473 249 317 38 59 chr4 5359299 5359485 -196968862 + MIR SINE MIR 46 227 -35 343 316 53 36 chr4 5359523 5359748 -196968599 - MARNA DNA Mariner -173 413 185 200 253 0 35 chr4 5360378 5360465 -196967882 + (TA)n Simple_repeat Simple_repeat 1 84 0 203 189 57 0 chr4 5360510 5360563 -196967784 - MIR SINE MIR -58 204 149 6721 150 40 9 chr4 5360668 5363672 -196964675 - L1PBa LINE L1 -2396 4466 1311 618 115 353 0 chr4 5363674 5363796 -196964551 - L1PBa LINE L1 -5704 1159 995 * 1203 143 10 0 chr4 5363792 5363988 -196964359 - L1PBa LINE L1 -6665 198 1 209 311 66 9 chr4 5363993 5364099 -196964248 + MIR SINE MIR 82 193 -69 423 305 31 16 chr4 5364186 5364314 -196964033 + L2 LINE L2 3180 3309 -4 7515 148 15 24 chr4 5364322 5365463 -196962884 + L1MA5 LINE L1 3984 5135 -1165 2224 120 0 0 chr4 5365463 5365764 -196962583 + AluSx SINE Alu 1 301 -11 7515 148 15 24 chr4 5365764 5366958 -196961389 + L1MA5 LINE L1 5135 6298 -2 1615 247 50 8 chr4 5366958 5367481 -196960866 + L1M4 LINE L1 3080 3624 -2522 29 47 0 0 chr4 5367481 5367524 -196960823 + AT_rich Low_complexity Low_complexity 1 43 0 407 202 59 17 chr4 5367718 5367837 -196960510 - L1M4 LINE L1 -1015 5131 5008 22 0 0 0 chr4 5367837 5367859 -196960488 + AT_rich Low_complexity Low_complexity 1 22 0 5969 25 3 9 chr4 5367865 5368533 -196959814 - L1PA3 LINE L1 0 6155 5492 537 198 58 0 chr4 5368535 5368656 -196959691 + L1M4 LINE L1 3619 3746 -2400 290 273 114 30 chr4 5368959 5369091 -196959256 + L2 LINE L2 3171 3313 0 262 180 34 79 chr4 5369108 5369197 -196959150 - MIR SINE MIR 0 262 178 203 250 50 0 chr4 5369894 5369954 -196958393 - MIR SINE MIR -12 250 188 367 284 132 56 chr4 5369961 5370158 -196958189 - MIR SINE MIR -3 259 48 269 206 0 15 chr4 5370269 5370337 -196958010 + (CATATA)n Simple_repeat Simple_repeat 1 67 0 329 264 195 38 chr4 5371104 5371263 -196957084 - MIR3 SINE MIR -4 204 21 578 243 104 30 chr4 5371754 5371956 -196956391 + MIR SINE MIR 46 262 0 221 338 68 0 chr4 5372358 5372432 -196955915 + L2 LINE L2 3101 3179 -93 335 286 209 5 chr4 5372501 5372707 -196955640 + MIR SINE MIR 10 257 -5 410 333 117 0 chr4 5373476 5373647 -196954700 + L2 LINE L2 2771 2961 -353 5367 258 116 29 chr4 5373689 5375613 -196952734 + L1ME1 LINE L1 816 2573 -4368 984 229 19 19 chr4 5375613 5375823 -196952524 - MER63A DNA MER1_type 0 210 1 5367 258 116 29 chr4 5375823 5376327 -196952020 + L1ME1 LINE L1 2573 3032 -3909 2340 103 0 3 chr4 5376327 5376637 -196951710 - AluY SINE Alu -2 309 1 5367 258 116 29 chr4 5376637 5377748 -196950599 + L1ME1 LINE L1 3032 4833 -2108 588 161 0 0 chr4 5377781 5377874 -196950473 + HY3 scRNA scRNA 4 96 -5 2850 213 97 38 chr4 5377894 5378048 -196950299 + L1ME1 LINE L1 5967 6110 -851 1851 131 57 17 chr4 5378048 5378346 -196950001 - AluSx SINE Alu -2 310 1 2850 213 97 38 chr4 5378346 5379115 -196949232 + L1ME1 LINE L1 6110 6952 -9 391 288 31 49 chr4 5379122 5379285 -196949062 + L2 LINE L2 3140 3299 -14 234 0 0 0 chr4 5379286 5379312 -196949035 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 233 234 138 21 chr4 5379322 5379416 -196948931 + MIR SINE MIR 20 124 -138 7458 172 156 13 chr4 5379458 5380956 -196947391 - MER52A LTR ERV1 0 1755 44 220 321 74 0 chr4 5381123 5381204 -196947143 + L2 LINE L2 3136 3222 -50 216 329 12 12 chr4 5381266 5381348 -196946999 - MIR SINE MIR -19 243 162 674 155 30 37 chr4 5381730 5381963 -196946384 + AluJb SINE Alu 35 312 0 366 274 183 0 chr4 5382410 5382574 -196945773 - MIR SINE MIR 0 262 69 218 311 120 24 chr4 5383525 5383655 -196944692 + MIR SINE MIR 77 228 -34 2107 159 26 34 chr4 5383655 5384033 -196944314 - THE1C LTR MaLR 0 375 1 218 311 120 24 chr4 5384033 5384069 -196944278 + MIR SINE MIR 228 259 -3 510 257 11 75 chr4 5384252 5384439 -196943908 + MLT1D LTR MaLR 14 188 -438 14925 205 70 13 chr4 5384439 5384494 -196943853 + L1MA4A LINE L1 5 55 -6950 1915 136 59 56 chr4 5384494 5384868 -196943479 + THE1C LTR MaLR 1 375 0 14925 205 70 13 chr4 5384868 5387966 -196940381 + L1MA4A LINE L1 55 2974 -4031 189 0 0 0 chr4 5387966 5387987 -196940360 + (CAA)n Simple_repeat Simple_repeat 2 22 0 14925 205 70 13 chr4 5387987 5391174 -196937173 + L1MA4A LINE L1 2974 6746 -259 2073 123 3 0 chr4 5391174 5391458 -196936889 - AluSx SINE Alu -27 285 1 14925 205 70 13 chr4 5391458 5391727 -196936620 + L1MA4A LINE L1 6746 6998 -7 27 29 0 0 chr4 5391727 5391761 -196936586 + AT_rich Low_complexity Low_complexity 1 34 0 924 184 161 11 chr4 5391774 5392044 -196936303 + MLT1D LTR MaLR 216 502 -3 217 267 105 23 chr4 5392047 5392133 -196936214 + MIR SINE MIR 159 251 -11 1091 204 13 44 chr4 5392433 5392658 -196935689 - MER20 DNA MER1_type 0 219 2 929 200 44 62 chr4 5393086 5393361 -196934986 - MLT1C LTR MaLR -197 270 1 2122 109 0 3 chr4 5393609 5393892 -196934455 + AluSq SINE Alu 2 283 -30 226 196 0 0 chr4 5393894 5393940 -196934407 - L1MC4 LINE L1 -1339 6703 6658 468 150 0 0 chr4 5393940 5394020 -196934327 + (CA)n Simple_repeat Simple_repeat 2 81 0 276 158 0 0 chr4 5395578 5395635 -196932712 + (CA)n Simple_repeat Simple_repeat 2 58 0 429 205 0 0 chr4 5396194 5396311 -196932036 + (TCCA)n Simple_repeat Simple_repeat 1 117 0 828 272 99 60 chr4 5396329 5396945 -196931402 - L2 LINE L2 -37 3276 2641 1329 115 0 0 chr4 5397545 5397728 -196930619 + AluSp SINE Alu 129 311 -2 2752 161 69 13 chr4 5397735 5398274 -196930073 - L1MB2 LINE L1 -10 6161 5593 1274 167 34 0 chr4 5398300 5398504 -196929843 - AluJb SINE Alu -47 265 55 477 266 198 54 chr4 5399343 5399711 -196928636 - LTR33A LTR ERVL -10 513 93 193 277 0 0 chr4 5400004 5400051 -196928296 + L2 LINE L2 3186 3232 -40 189 287 126 11 chr4 5400219 5400306 -196928041 - MIR SINE MIR -60 148 52 271 289 40 40 chr4 5400918 5401067 -196927280 + L2 LINE L2 2685 2833 -481 304 314 127 33 chr4 5401268 5401513 -196926834 - MLT1K LTR MaLR -182 406 139 2214 102 0 7 chr4 5401777 5402070 -196926277 - AluSq SINE Alu -22 291 1 238 327 113 24 chr4 5402122 5402290 -196926057 + L2 LINE L2 3104 3286 -27 189 308 84 63 chr4 5403031 5403174 -196925173 + MIR SINE MIR 70 215 -47 204 333 19 29 chr4 5403290 5403395 -196924952 + MIR SINE MIR 46 149 -113 235 322 66 25 chr4 5403771 5403892 -196924455 - MER5A DNA MER1_type -1 188 63 772 69 0 0 chr4 5404082 5404184 -196924163 - L1MA1 LINE L1 0 6302 6201 2062 157 13 24 chr4 5404969 5405346 -196923001 + MLT1B LTR MaLR 1 373 -17 585 254 21 0 chr4 5406109 5406251 -196922096 + MER45A DNA AcHobo 34 178 0 256 349 66 0 chr4 5406264 5406370 -196921977 - MIR SINE MIR -71 191 79 390 273 60 40 chr4 5406497 5406647 -196921700 + L2 LINE L2 3160 3312 -1 357 298 142 0 chr4 5406701 5406842 -196921505 - MIR SINE MIR -55 207 47 672 244 5 86 chr4 5407235 5407298 -196921049 + MIR SINE MIR 26 93 -169 1923 193 11 67 chr4 5407298 5407733 -196920614 - MLT2D LTR ERVL 0 414 4 672 244 5 86 chr4 5407733 5407890 -196920457 + MIR SINE MIR 93 228 -34 524 267 36 27 chr4 5408212 5408426 -196919921 - MIR SINE MIR -13 249 34 447 254 260 21 chr4 5409251 5409730 -196918617 - L2 LINE L2 0 3313 2713 200 310 0 0 chr4 5409783 5409841 -196918506 - L2 LINE L2 -774 2540 2483 1304 277 260 15 chr4 5409858 5410945 -196917402 - L2 LINE L2 -1938 1376 23 295 243 0 23 chr4 5411253 5411515 -196916832 + C-rich Low_complexity Low_complexity 1 255 0 317 306 67 40 chr4 5411881 5412055 -196916292 + MIR3 SINE MIR 12 190 -18 364 341 12 49 chr4 5412101 5412265 -196916082 + MIR3 SINE MIR 37 194 -14 281 331 111 94 chr4 5412712 5413072 -196915275 - L2 LINE L2 -8 3264 2899 421 303 43 33 chr4 5413135 5413184 -196915163 + MIR SINE MIR 20 67 -177 2335 100 6 3 chr4 5413184 5413495 -196914852 - AluSq SINE Alu -1 312 1 421 303 43 33 chr4 5413495 5413633 -196914714 + MIR SINE MIR 67 207 -37 228 244 309 24 chr4 5413776 5413899 -196914448 - MIR SINE MIR -5 257 100 301 255 29 29 chr4 5414471 5414573 -196913774 + L3b LINE CR1 1279 1380 -203 1871 198 7 44 chr4 5414739 5415144 -196913203 - MLT1B LTR MaLR 0 390 1 1490 250 70 2 chr4 5415160 5415616 -196912731 + MLT1D LTR MaLR 1 487 -18 277 282 12 12 chr4 5415629 5415714 -196912633 + MIR SINE MIR 162 246 -16 1076 243 36 30 chr4 5416154 5416406 -196911941 - MLT1C LTR MaLR -29 438 182 2228 109 23 7 chr4 5416406 5416710 -196911637 - AluY SINE Alu -2 309 1 1076 243 36 30 chr4 5416710 5416786 -196911561 - MLT1C LTR MaLR -285 182 108 269 143 175 0 chr4 5416873 5416936 -196911411 - MLT1C LTR MaLR -368 99 26 195 310 0 0 chr4 5417442 5417500 -196910847 - L2 LINE L2 -563 2751 2694 2033 125 32 0 chr4 5417609 5417888 -196910459 + AluSx SINE Alu 7 294 -18 240 261 144 27 chr4 5418113 5418224 -196910123 + MIR SINE MIR 105 228 -34 186 370 0 0 chr4 5418243 5418316 -196910031 + MIR SINE MIR 188 260 -2 317 324 82 34 chr4 5418725 5418845 -196909502 - MIR SINE MIR -25 237 101 2680 115 51 5 chr4 5418845 5419254 -196909093 - MSTA LTR MaLR 0 428 1 317 324 82 34 chr4 5419254 5419340 -196909007 - MIR SINE MIR -161 101 21 378 265 121 8 chr4 5420145 5420277 -196908070 - MIR SINE MIR -39 223 77 1104 278 44 54 chr4 5420280 5420784 -196907563 - MLT1E LTR MaLR -3 590 92 314 299 124 17 chr4 5420856 5421090 -196907257 + L2 LINE L2 2990 3248 -65 1210 221 95 52 chr4 5421523 5421966 -196906381 - MLT1C LTR MaLR 0 467 6 218 311 68 14 chr4 5422811 5422885 -196905462 - L2 LINE L2 -28 3285 3208 793 212 13 87 chr4 5423001 5423232 -196905115 - MER58C DNA MER1_type -1 214 1 469 278 69 0 chr4 5423971 5424115 -196904232 + MIR SINE MIR 47 200 -62 486 153 57 57 chr4 5424213 5424346 -196904001 - MER5A DNA MER1_type -53 136 4 287 272 130 0 chr4 5424357 5424449 -196903898 - MER5A DNA MER1_type 0 189 86 219 331 50 2 chr4 5425073 5425211 -196903136 + MIR SINE MIR 33 175 -76 373 293 121 0 chr4 5426250 5426366 -196901981 - L2 LINE L2 -2 3270 3141 325 234 184 96 chr4 5427234 5427712 -196900635 - MLT1H LTR MaLR -17 532 13 192 221 256 12 chr4 5427961 5428047 -196900300 - L2 LINE L2 -21 3251 3145 339 277 184 28 chr4 5428052 5428193 -196900154 - MER5B DNA MER1_type -5 173 11 2266 188 65 32 chr4 5428504 5429042 -196899305 + MER74A LTR ERVL 3 558 0 1376 196 110 6 chr4 5429576 5429893 -196898454 - MLT1C LTR MaLR -8 459 110 479 186 102 51 chr4 5430174 5430292 -196898055 - MLT1C LTR MaLR -343 124 1 2133 102 7 0 chr4 5430314 5430588 -196897759 - AluY SINE Alu -9 302 27 2119 138 22 43 chr4 5430859 5430943 -196897404 + MLT1A1 LTR MaLR 1 85 -280 2014 149 155 13 chr4 5430943 5431318 -196897029 - MSTA LTR MaLR 0 428 1 9075 178 42 1 chr4 5431325 5432911 -196895436 - MSTA-int LTR MaLR 0 1651 1 1844 138 121 87 chr4 5432911 5433325 -196895022 - MSTA LTR MaLR 0 428 1 2119 138 22 43 chr4 5433325 5433602 -196894745 + MLT1A1 LTR MaLR 89 363 -2 2154 146 125 8 chr4 5433655 5434038 -196894309 + MSTA LTR MaLR 1 428 0 268 301 36 0 chr4 5434598 5434681 -196893666 - LTR67 LTR ERVL -366 191 106 701 206 153 53 chr4 5436261 5436489 -196891858 - MLT1A1 LTR MaLR -41 324 74 2442 88 0 0 chr4 5436489 5436785 -196891562 - AluY SINE Alu -15 296 1 240 211 175 0 chr4 5436805 5436862 -196891485 - MER2 DNA MER2_type -1 344 278 914 203 9 42 chr4 5436921 5437138 -196891209 - MER2 DNA MER2_type -135 210 1 233 128 106 0 chr4 5437148 5437195 -196891152 - MLT1A1 LTR MaLR -311 54 3 * 567 250 27 7 chr4 5437195 5437334 -196891013 + MLT1A2 LTR MaLR 233 374 0 282 248 199 71 chr4 5438242 5438592 -196889755 + L2 LINE L2 2624 3063 -250 * 458 257 18 0 chr4 5438591 5438704 -196889643 - MIR SINE MIR -75 187 73 308 286 142 24 chr4 5438708 5438971 -196889376 - MLT1K LTR MaLR 0 588 327 282 258 0 0 chr4 5439058 5439155 -196889192 + L1MC/D LINE L1 5156 5252 -894 422 247 140 88 chr4 5439243 5439607 -196888740 + L1MC/D LINE L1 5429 5811 -1997 319 161 16 16 chr4 5439607 5439669 -196888678 - MER46C DNA MER2_type -1 337 276 28 61 0 0 chr4 5439677 5439726 -196888621 + AT_rich Low_complexity Low_complexity 1 49 0 454 241 76 0 chr4 5439770 5439915 -196888432 - MER46C DNA MER2_type -97 241 86 904 259 19 42 chr4 5440631 5440894 -196887453 - MIR SINE MIR -2 260 4 280 272 39 10 chr4 5441620 5441723 -196886624 + CT-rich Low_complexity Low_complexity 5 110 0 196 362 46 11 chr4 5442445 5442619 -196885728 + L2 LINE L2 2827 3006 -266 540 335 61 48 chr4 5442666 5443176 -196885171 - L1MEd LINE L1 -997 1267 69 485 269 210 31 chr4 5443177 5443530 -196884817 - MLT1H LTR MaLR -7 542 127 492 232 54 152 chr4 5445369 5445645 -196882702 - MIR SINE MIR 0 262 14 324 331 8 0 chr4 5445677 5445810 -196882537 - MARNA DNA Mariner -43 543 410 2057 126 0 53 chr4 5446340 5446530 -196881817 - AluSq SINE Alu 0 310 142 2445 87 0 3 chr4 5446530 5446840 -196881507 - AluY SINE Alu -2 309 1 2057 126 0 53 chr4 5446840 5446975 -196881372 - AluSq SINE Alu -168 142 1 623 290 44 11 chr4 5447245 5447428 -196880919 - MIR SINE MIR -72 190 2 325 340 89 49 chr4 5448075 5448501 -196879846 - L2 LINE L2 -3 3269 2827 300 295 23 54 chr4 5448827 5448956 -196879391 + MIR SINE MIR 119 243 -19 243 321 74 0 chr4 5449018 5449099 -196879248 - L2 LINE L2 -50 3222 3136 7201 175 158 12 chr4 5449270 5450761 -196877586 + MER52A LTR ERV1 48 1755 0 243 234 138 21 chr4 5450803 5450897 -196877450 - MIR SINE MIR -138 124 20 234 0 0 0 chr4 5450907 5450933 -196877414 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 438 282 31 49 chr4 5450934 5451097 -196877250 - L2 LINE L2 -14 3299 3140 2631 231 92 27 chr4 5451104 5451873 -196876474 - L1ME1 LINE L1 -9 6952 6105 1902 138 57 7 chr4 5451873 5452170 -196876177 + AluSx SINE Alu 1 312 0 2631 231 92 27 chr4 5452170 5452319 -196876028 - L1ME1 LINE L1 -856 6105 5967 549 161 0 0 chr4 5452339 5452432 -196875915 - HY3 scRNA scRNA -5 96 4 4866 262 114 28 chr4 5452465 5453576 -196874771 - L1ME1 LINE L1 -2108 4833 3819 2367 107 0 3 chr4 5453576 5453886 -196874461 + AluY SINE Alu 1 309 -2 4866 262 114 28 chr4 5453886 5454390 -196873957 - L1ME1 LINE L1 -3122 3819 3360 924 229 19 19 chr4 5454390 5454600 -196873747 + MER63A DNA MER1_type 1 210 0 4866 262 114 28 chr4 5454600 5456523 -196871824 - L1ME1 LINE L1 -3581 3360 816 405 333 117 0 chr4 5456565 5456736 -196871611 - L2 LINE L2 -353 2961 2771 354 289 204 5 chr4 5457499 5457710 -196870637 - MIR SINE MIR 0 262 10 217 338 68 0 chr4 5457779 5457853 -196870494 - L2 LINE L2 -93 3179 3101 606 263 117 29 chr4 5458252 5458492 -196869855 - MIR SINE MIR 0 262 2 233 328 172 38 chr4 5458518 5458884 -196869463 - L2 LINE L2 -627 2687 2273 348 264 195 38 chr4 5458933 5459092 -196869255 + MIR3 SINE MIR 21 204 -4 311 269 8 76 chr4 5459841 5459960 -196868387 + L1MC4 LINE L1 6622 6732 -1310 428 274 132 56 chr4 5460036 5460233 -196868114 + MIR SINE MIR 48 259 -3 214 250 50 0 chr4 5460240 5460300 -196868047 + MIR SINE MIR 188 250 -12 260 366 27 9 chr4 5460373 5460485 -196867862 + MIR SINE MIR 24 137 -71 272 180 34 79 chr4 5461002 5461091 -196867256 + MIR SINE MIR 178 262 0 318 280 114 30 chr4 5461108 5461240 -196867107 - L2 LINE L2 0 3313 3171 197 336 50 17 chr4 5461372 5461491 -196866856 - L2 LINE L2 -209 3063 2941 257 262 94 60 chr4 5462190 5462339 -196866008 + MIR3 SINE MIR 33 186 -22 184 346 0 0 chr4 5462438 5462490 -196865857 - L2 LINE L2 -14 3258 3207 690 254 50 35 chr4 5462578 5462661 -196865686 + MIR SINE MIR 28 108 -154 1453 241 81 27 chr4 5462661 5463104 -196865243 - MLT1C LTR MaLR 0 467 1 690 254 50 35 chr4 5463104 5463221 -196865126 + MIR SINE MIR 108 231 -31 41271 36 22 1 chr4 5464052 5470079 -196858268 - L1PA2 LINE L1 0 6155 1 571 257 41 53 chr4 5470116 5470287 -196858060 - MIR SINE MIR 0 262 94 225 223 155 58 chr4 5470467 5470570 -196857777 + MIR SINE MIR 29 141 -67 1312 163 8 31 chr4 5471096 5471354 -196856993 - L1MB5 LINE L1 0 6174 5923 1973 133 33 0 chr4 5471734 5472034 -196856313 + AluSq SINE Alu 1 310 -3 349 336 29 14 chr4 5472399 5472539 -196855808 - MIR3 SINE MIR -49 159 18 1973 133 3 30 chr4 5472796 5473097 -196855250 + AluJb SINE Alu 1 293 -19 211 243 30 52 chr4 5473160 5473259 -196855088 + MIR SINE MIR 99 200 -8 184 287 176 0 chr4 5473413 5473521 -196854826 + L2 LINE L2 3146 3272 0 23 33 0 0 chr4 5474062 5474092 -196854255 + AT_rich Low_complexity Low_complexity 1 30 0 1997 122 3 14 chr4 5474510 5474804 -196853543 + AluSx SINE Alu 1 291 -21 3419 116 25 26 chr4 5475007 5475535 -196852812 + MER1A DNA MER1_type 1 527 0 442 327 7 20 chr4 5475852 5476002 -196852345 - L3 LINE CR1 -89 1488 1341 302 353 14 43 chr4 5476034 5476241 -196852106 + MIR SINE MIR 51 251 -11 445 250 74 23 chr4 5476400 5476576 -196851771 + MIR SINE MIR 49 233 -29 257 339 35 9 chr4 5476809 5476924 -196851423 - L2 LINE L2 -477 2837 2720 * 393 286 124 57 chr4 5476921 5477064 -196851283 + MIR SINE MIR 6 169 -93 1280 164 19 5 chr4 5477064 5477277 -196851070 - MER20 DNA MER1_type -3 216 1 393 286 124 57 chr4 5477277 5477343 -196851004 + MIR SINE MIR 169 229 -33 192 345 36 0 chr4 5478110 5478165 -196850182 + MIR3 SINE MIR 133 189 -19 195 42 0 0 chr4 5478672 5478696 -196849651 + (GA)n Simple_repeat Simple_repeat 2 25 0 269 233 0 0 chr4 5478883 5478943 -196849404 + MIR SINE MIR 88 147 -61 2188 122 0 3 chr4 5479072 5479367 -196848980 + AluSq SINE Alu 1 294 -19 203 288 34 0 chr4 5479536 5479595 -196848752 + L2 LINE L2 3136 3196 -76 1448 177 59 67 chr4 5479703 5480076 -196848271 - MLT1B LTR MaLR -20 370 1 239 299 0 0 chr4 5480149 5480216 -196848131 + MIR SINE MIR 115 181 -81 235 318 65 9 chr4 5481171 5481278 -196847069 - L2 LINE L2 -24 3248 3136 243 292 14 0 chr4 5481940 5482012 -196846335 + MIR SINE MIR 22 94 -168 2668 54 0 6 chr4 5482652 5482965 -196845382 - AluY SINE Alu 0 311 1 1984 102 11 25 chr4 5483036 5483319 -196845028 + AluSp SINE Alu 1 279 -34 575 129 0 10 chr4 5483337 5483438 -196844909 + (GGAA)n Simple_repeat Simple_repeat 1 100 0 792 207 40 6 chr4 5483484 5483658 -196844689 + MER5A DNA MER1_type 1 180 -9 479 311 21 31 chr4 5483844 5484037 -196844310 - MIR SINE MIR -70 192 2 926 127 0 182 chr4 5484095 5484331 -196844016 - 7SK RNA RNA 0 193 1 311 261 35 49 chr4 5484353 5484495 -196843852 + MER5B DNA MER1_type 1 140 -38 208 335 99 13 chr4 5484801 5484953 -196843394 - MIR3 SINE MIR -24 184 20 187 273 91 57 chr4 5485303 5485391 -196842956 + MIR SINE MIR 55 145 -63 469 320 120 27 chr4 5486063 5486434 -196841913 - L2 LINE L2 -223 3090 2685 618 242 3 0 chr4 5487516 5487869 -196840478 + (TG)n Simple_repeat Simple_repeat 1 354 0 780 217 49 0 chr4 5488135 5488319 -196840028 - MER20 DNA MER1_type -24 195 3 317 260 0 6 chr4 5488933 5489114 -196839233 + (CA)n Simple_repeat Simple_repeat 1 180 0 2067 183 46 0 chr4 5489342 5489736 -196838611 - MSTB LTR MaLR 0 426 15 435 343 157 0 chr4 5490051 5490261 -196838086 - MIR SINE MIR -1 261 19 201 74 0 0 chr4 5490310 5490337 -196838010 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 412 244 193 10 chr4 5490652 5490849 -196837498 - MIR SINE MIR -10 252 20 341 294 87 38 chr4 5491016 5491255 -196837092 - MIR SINE MIR -12 250 1 419 297 143 6 chr4 5491289 5491464 -196836883 - MIR SINE MIR -7 255 57 348 255 20 29 chr4 5491764 5491866 -196836481 + L1ME4a LINE L1 5800 5900 -221 278 141 16 47 chr4 5492587 5492641 -196835706 + ORSL DNA AcHobo 1 54 -221 1365 247 70 20 chr4 5492641 5493086 -196835261 - MLT1C LTR MaLR 0 467 1 302 267 67 0 chr4 5493820 5493895 -196834452 + MIR SINE MIR 14 93 -169 2339 59 42 3 chr4 5494231 5494518 -196833829 + AluY SINE Alu 1 298 -13 237 321 130 41 chr4 5494724 5494970 -196833377 - L2 LINE L2 -90 3182 2915 2054 180 69 7 chr4 5496629 5497069 -196831278 + MLT1C LTR MaLR 1 467 0 194 360 12 0 chr4 5497081 5497167 -196831180 + MER5A DNA MER1_type 80 166 -23 279 345 18 0 chr4 5497372 5497482 -196830865 - LTR16C LTR ERVL -287 204 93 996 163 98 25 chr4 5498298 5498501 -196829846 - MER20 DNA MER1_type -1 218 1 198 286 209 9 chr4 5498632 5498737 -196829610 - L2 LINE L2 0 3313 3188 408 258 86 7 chr4 5498879 5499030 -196829317 - MIR SINE MIR -72 190 28 2318 104 3 0 chr4 5499283 5499582 -196828765 + AluSx SINE Alu 1 300 -12 241 289 59 17 chr4 5499727 5499859 -196828488 + MIR3 SINE MIR 25 161 -47 2375 79 0 16 chr4 5500590 5500894 -196827453 + AluSg SINE Alu 1 299 -11 1912 122 4 0 chr4 5500905 5501160 -196827187 + AluSx SINE Alu 39 294 -18 2356 80 6 26 chr4 5501337 5501650 -196826697 - AluSq SINE Alu -6 307 1 949 215 45 126 chr4 5502047 5502555 -196825792 + MLT1C LTR MaLR 1 467 0 640 293 90 24 chr4 5502998 5503332 -196825015 - MLT1I LTR MaLR -50 359 4 281 336 66 8 chr4 5504243 5504499 -196823848 - LTR33 LTR ERVL -241 280 10 2394 100 3 0 chr4 5504514 5504869 -196823478 - AluSx SINE Alu 0 356 1 416 300 53 87 chr4 5504882 5505182 -196823165 + L3 LINE CR1 1251 1540 -37 599 228 178 15 chr4 5505350 5505547 -196822800 + MIR SINE MIR 13 241 -21 2794 54 3 40 chr4 5505664 5506037 -196822310 - MER4E LTR ERV1 0 766 408 43870 47 1 1 chr4 5506037 5512155 -196816192 - L1PA4 LINE L1 -5 6150 30 1322 200 0 8 chr4 5512203 5512443 -196815904 - MER65C LTR ERV1 -41 420 183 377 118 0 0 chr4 5512449 5512500 -196815847 - MER65C LTR ERV1 -410 51 1 638 333 57 41 chr4 5512502 5512995 -196815352 - MER65C-int LTR ERV1 -2 4869 4369 1501 274 74 14 chr4 5513112 5513531 -196814816 - MER65C-int LTR ERV1 -779 4092 3649 1619 107 5 0 chr4 5513548 5513763 -196814584 + AluSg/x SINE Alu 82 297 -15 291 139 0 0 chr4 5513772 5513815 -196814532 + tRNA-Gln-CAG tRNA tRNA 1 43 -32 3326 197 60 77 chr4 5513816 5515050 -196813297 - MER65C-int LTR ERV1 -3125 3473 1037 699 137 0 0 chr4 5515052 5515192 -196813155 - AluSc SINE Alu 0 317 178 1240 197 45 74 chr4 5515193 5515562 -196812785 - MER65-int LTR ERV1 -2902 1969 1612 2307 98 7 0 chr4 5515562 5515857 -196812490 - AluSx SINE Alu -15 297 1 1240 197 45 74 chr4 5515857 5515908 -196812439 - MER65-int LTR ERV1 -3259 1612 1561 44458 40 6 2 chr4 5516028 5522149 -196806198 - L1PA3 LINE L1 -3 6152 7 521 257 43 53 chr4 5522156 5522343 -196806004 - MER34 LTR ERV1 -319 223 39 282 154 0 58 chr4 5522629 5522681 -196805666 - LTR57-int LTR ERVL -4992 351 303 305 307 57 17 chr4 5523412 5523588 -196804759 - MIR SINE MIR -26 236 54 402 301 7 15 chr4 5523885 5524021 -196804326 + L2 LINE L2 3136 3270 -2 215 277 208 10 chr4 5524137 5524238 -196804109 - MIR SINE MIR -109 153 33 496 231 52 15 chr4 5524642 5524776 -196803571 + MIR3 SINE MIR 17 155 -53 426 278 28 45 chr4 5525587 5525793 -196802554 + MIR SINE MIR 1 205 -57 25 0 0 0 chr4 5526099 5526124 -196802223 + AT_rich Low_complexity Low_complexity 1 25 0 746 212 7 0 chr4 5527636 5527782 -196800565 + MER58B DNA MER1_type 195 341 0 1958 140 164 32 chr4 5528016 5528359 -196799988 - MSTA LTR MaLR 0 428 28 2012 130 0 7 chr4 5528359 5528665 -196799682 + AluSx SINE Alu 1 304 0 1958 140 164 32 chr4 5528665 5528698 -196799649 - MSTA LTR MaLR -400 28 1 1761 199 70 3 chr4 5529387 5529729 -196798618 + MLT1A1 LTR MaLR 1 365 0 386 285 148 54 chr4 5530565 5530935 -196797412 - L2 LINE L2 -284 2988 2590 843 286 68 39 chr4 5531542 5531624 -196796723 - MLT1L LTR MaLR -14 601 523 1663 194 0 9 chr4 5531624 5531939 -196796408 + AluJo SINE Alu 1 312 0 843 286 68 39 chr4 5531939 5532342 -196796005 - MLT1L LTR MaLR -92 523 102 339 321 44 0 chr4 5532706 5532843 -196795504 - MIR SINE MIR -6 256 114 256 204 0 0 chr4 5533085 5533129 -196795218 + MLT1F1 LTR MaLR 82 125 -442 2636 219 14 10 chr4 5533129 5533719 -196794628 + L1MD3 LINE L1 7404 7995 0 411 273 64 52 chr4 5534073 5534340 -196794007 + HAL1 LINE L1 801 1070 -1437 312 203 29 94 chr4 5534315 5534453 -196793894 + L1MA4 LINE L1 6165 6293 -7 * 6637 180 19 20 chr4 5534532 5536421 -196791926 + L1PA16 LINE L1 3895 5779 -387 1952 169 0 0 chr4 5536421 5536728 -196791619 + AluSx SINE Alu 1 307 -5 6637 180 19 20 chr4 5536728 5537114 -196791233 + L1PA16 LINE L1 5779 6164 -2 573 316 33 9 chr4 5537169 5537381 -196790966 - MIR SINE MIR 0 262 46 2556 117 14 0 chr4 5537461 5537820 -196790527 - THE1B LTR MaLR 0 364 1 10126 111 60 2 chr4 5537820 5539314 -196789033 - THE1B-int LTR MaLR 0 1580 1 2408 135 6 6 chr4 5539314 5539678 -196788669 - THE1B LTR MaLR 0 364 1 557 251 35 18 chr4 5540006 5540177 -196788170 - MER69A DNA AcHobo -2 175 2 1456 206 102 75 chr4 5540469 5540751 -196787596 - MER34 LTR ERV1 -9 533 235 2571 53 0 31 chr4 5540751 5541072 -196787275 + AluY SINE Alu 1 311 0 1456 206 102 75 chr4 5541072 5541191 -196787156 - MER34 LTR ERV1 -307 235 121 8552 202 54 29 chr4 5541191 5541627 -196786720 - MER34-int LTR ERV1 -250 4686 4262 2126 122 11 63 chr4 5541627 5541989 -196786358 + MER61A LTR ERV1 1 343 0 8552 202 54 29 chr4 5541989 5543631 -196784716 - MER34-int LTR ERV1 -674 4262 2556 27168 39 9 0 chr4 5543631 5549425 -196778922 + L1PA4 LINE L1 2 5832 -323 749 54 0 0 chr4 5549460 5549553 -196778794 + L1PA4 LINE L1 6054 6146 -9 402 194 101 36 chr4 5549560 5549699 -196778648 - MER34-int LTR ERV1 -3558 1378 1231 294 281 52 44 chr4 5550018 5550153 -196778194 - MER34-int LTR ERV1 -6147 654 519 1342 186 129 73 chr4 5550166 5550614 -196777733 - MER66A LTR ERV1 0 601 100 2528 201 44 2 chr4 5551049 5551546 -196776801 - MER34 LTR ERV1 0 542 25 659 290 47 53 chr4 5551893 5552345 -196776002 + LTR16A1 LTR ERVL 4 452 -5 189 259 155 0 chr4 5552365 5552423 -196775924 - L2 LINE L2 -65 3207 3141 365 301 81 0 chr4 5553103 5553239 -196775108 - MIR SINE MIR -70 192 46 235 312 0 0 chr4 5553342 5553419 -196774928 + MIR SINE MIR 176 252 -10 243 250 0 0 chr4 5553434 5553518 -196774829 + (CTG)n Simple_repeat Simple_repeat 3 86 0 383 309 17 11 chr4 5553524 5553760 -196774587 + (TTG)n Simple_repeat Simple_repeat 1 237 0 381 276 19 12 chr4 5554066 5554389 -196773958 + (TTG)n Simple_repeat Simple_repeat 1 325 0 232 324 124 0 chr4 5554990 5555095 -196773252 + L2 LINE L2 3150 3267 -5 2206 104 20 0 chr4 5555266 5555563 -196772784 - AluSq SINE Alu -10 303 1 1227 188 38 15 chr4 5555871 5556132 -196772215 - L1MA9 LINE L1 -38 6274 6008 352 221 26 62 chr4 5556465 5556578 -196771769 - MIR SINE MIR -68 194 86 312 163 0 0 chr4 5556682 5556731 -196771616 - MLT2D LTR ERVL 0 414 366 1340 143 177 33 chr4 5556735 5556842 -196771505 + MER2 DNA MER2_type 3 93 -252 3525 125 9 24 chr4 5556842 5557377 -196770970 + MER1A DNA MER1_type 1 527 0 1340 143 177 33 chr4 5557377 5557569 -196770778 + MER2 DNA MER2_type 93 345 0 1652 203 72 6 chr4 5557569 5557918 -196770429 - MLT2D LTR ERVL -42 372 1 1125 249 76 15 chr4 5558442 5559015 -196769332 - L2 LINE L2 0 3313 2700 741 301 115 8 chr4 5559191 5559603 -196768744 - L2 LINE L2 -204 3109 2655 279 314 51 8 chr4 5559691 5559809 -196768538 + L2 LINE L2 3189 3311 -2 294 95 0 0 chr4 5559810 5559852 -196768495 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 207 0 0 0 chr4 5560269 5560292 -196768055 + (A)n Simple_repeat Simple_repeat 1 23 0 495 306 39 69 chr4 5560544 5560904 -196767443 - LTR67 LTR ERVL -124 433 85 1020 129 14 37 chr4 5560912 5561048 -196767299 - MLT1A2 LTR MaLR -1 373 235 345 47 0 0 chr4 5561048 5561091 -196767256 + (GA)n Simple_repeat Simple_repeat 2 44 0 1020 129 14 37 chr4 5561091 5561273 -196767074 - MLT1A2 LTR MaLR -139 235 1 281 50 25 0 chr4 5561380 5561420 -196766927 + L2 LINE L2 3214 3254 -18 21 36 0 0 chr4 5561833 5561861 -196766486 + AT_rich Low_complexity Low_complexity 1 28 0 2541 65 0 0 chr4 5561953 5562247 -196766100 + AluY SINE Alu 1 294 -17 302 230 73 51 chr4 5562254 5562432 -196765915 + L1MC/D LINE L1 5258 5439 -2369 1853 244 54 9 chr4 5562448 5563212 -196765135 + L1ME1 LINE L1 60 897 -5499 2508 237 50 35 chr4 5563213 5565227 -196763120 + L1ME1 LINE L1 3028 5212 -1023 216 0 0 0 chr4 5565227 5565251 -196763096 + (CA)n Simple_repeat Simple_repeat 2 25 0 2508 237 50 35 chr4 5565251 5566284 -196762063 + L1ME1 LINE L1 5212 6228 -7 318 315 0 0 chr4 5566294 5566386 -196761961 + L1MC/D LINE L1 5427 5518 -2290 21 0 0 0 chr4 5566480 5566501 -196761846 + AT_rich Low_complexity Low_complexity 1 21 0 597 278 128 18 chr4 5566645 5566926 -196761421 - L2 LINE L2 -3 3310 2999 270 336 0 9 chr4 5567110 5567220 -196761127 + MIR SINE MIR 45 153 -55 375 257 83 0 chr4 5567229 5567338 -196761009 - L2 LINE L2 -3 3269 3152 952 201 67 48 chr4 5567341 5567610 -196760737 + MLT1A2 LTR MaLR 2 275 -99 1800 164 0 11 chr4 5567624 5567911 -196760436 + AluJb SINE Alu 5 288 -24 586 254 31 21 chr4 5568025 5568218 -196760129 + MIR SINE MIR 34 228 -34 189 107 0 0 chr4 5570634 5570662 -196757685 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 385 247 55 41 chr4 5570768 5570914 -196757433 + MIR SINE MIR 8 155 -107 251 229 41 82 chr4 5571063 5571185 -196757162 + MLT1J2 LTR MaLR 3 119 -331 6838 36 0 1 chr4 5571374 5572176 -196756171 + L1PA4 LINE L1 5352 6152 -3 7074 183 169 16 chr4 5572235 5573751 -196754596 + MER52A LTR ERV1 1 1749 -6 504 224 131 90 chr4 5573768 5574013 -196754334 + MLT1J LTR MaLR 257 511 0 471 219 31 25 chr4 5574206 5574366 -196753981 - L1ME4a LINE L1 -2 6119 5959 437 110 14 0 chr4 5574387 5574460 -196753887 + (TTCC)n Simple_repeat Simple_repeat 1 74 0 277 306 39 54 chr4 5574668 5574919 -196753428 - MIR SINE MIR -5 257 9 260 211 211 0 chr4 5575034 5575129 -196753218 - MIR SINE MIR -116 146 32 1967 126 99 15 chr4 5575245 5575579 -196752768 + THE1B LTR MaLR 3 364 0 12400 79 6 0 chr4 5575579 5577145 -196751202 + THE1B-int LTR MaLR 1 1575 -5 2339 99 51 26 chr4 5577151 5577503 -196750844 + THE1B LTR MaLR 4 364 0 699 285 52 38 chr4 5577505 5577874 -196750473 - HAL1 LINE L1 -100 2407 2034 397 219 31 0 chr4 5577871 5577967 -196750380 + L1MC5 LINE L1 7690 7788 -173 * 597 309 78 25 chr4 5578110 5578430 -196749917 + L1MEc LINE L1 208 544 -5852 2619 115 33 14 chr4 5578476 5578895 -196749452 - MSTA LTR MaLR -1 427 1 700 199 97 58 chr4 5578963 5579189 -196749158 + L1MB8 LINE L1 5944 6178 0 729 288 30 9 chr4 5579190 5579527 -196748820 + L1MEc LINE L1 673 1016 -5380 1454 272 67 54 chr4 5579556 5580170 -196748177 + L1MCb LINE L1 3 624 -5421 481 171 29 19 chr4 5580197 5580302 -196748045 - L1MC5 LINE L1 -173 7788 7683 * 623 265 65 33 chr4 5580290 5580468 -196747879 + HAL1 LINE L1 2034 2224 -283 234 0 0 0 chr4 5580468 5580494 -196747853 + (TG)n Simple_repeat Simple_repeat 2 27 0 623 265 65 33 chr4 5580494 5580560 -196747787 + HAL1 LINE L1 2224 2286 -221 8547 242 42 19 chr4 5580606 5581348 -196746999 + L1MCb LINE L1 2442 3166 -3398 2278 110 0 7 chr4 5581348 5581656 -196746691 + AluSg SINE Alu 1 306 -4 8547 242 42 19 chr4 5581656 5583736 -196744611 + L1MCb LINE L1 3166 5284 -1280 5881 157 34 81 chr4 5583735 5584361 -196743986 + L1MC3 LINE L1 5914 6443 -1342 * 1659 192 27 3 chr4 5584361 5584485 -196743862 + AluJb SINE Alu 1 121 -191 216 0 0 0 chr4 5584485 5584509 -196743838 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1659 192 27 3 chr4 5584509 5584681 -196743666 + AluJb SINE Alu 121 304 -8 5881 157 34 81 chr4 5584681 5585396 -196742951 + L1MC3 LINE L1 6443 7191 -594 1988 131 38 35 chr4 5585738 5586104 -196742243 - THE1C LTR MaLR -8 367 1 23 0 0 0 chr4 5586124 5586147 -196742200 + AT_rich Low_complexity Low_complexity 1 23 0 331 303 127 21 chr4 5586204 5586346 -196742001 - MIR SINE MIR -74 188 32 229 265 61 41 chr4 5586699 5586797 -196741550 - MIR SINE MIR -162 100 1 273 346 31 25 chr4 5587104 5587263 -196741084 + MIR SINE MIR 37 196 -66 352 288 11 34 chr4 5587585 5587718 -196740629 + MIR SINE MIR 16 150 -58 575 225 46 101 chr4 5588745 5588800 -196739547 - MER63A DNA MER1_type -1478 210 154 2022 131 17 3 chr4 5588800 5589090 -196739257 - AluSc SINE Alu -15 294 1 575 225 46 101 chr4 5589090 5589252 -196739095 - MER63A DNA MER1_type -1534 154 5 298 206 0 29 chr4 5589711 5589779 -196738568 - L3 LINE CR1 -533 1044 979 32831 39 7 1 chr4 5590527 5595260 -196733087 + L1PA4 LINE L1 1388 6150 -5 832 70 9 0 chr4 5595260 5595374 -196732973 + MER4E LTR ERV1 408 522 -244 254 295 51 0 chr4 5795379 5795457 -196532890 + MIR SINE MIR 173 254 -8 867 246 188 56 chr4 5796540 5797164 -196531183 + L2 LINE L2 2573 3313 0 317 308 11 11 chr4 5797203 5797294 -196531053 + MIR3 SINE MIR 8 98 -110 208 349 0 0 chr4 5797478 5797541 -196530806 + (ATG)n Simple_repeat Simple_repeat 2 64 0 817 157 29 34 chr4 5797544 5797742 -196530605 + MER6 DNA MER2_type -65 865 0 466 163 24 91 chr4 5797777 5797953 -196530394 - MIR SINE MIR 0 262 101 526 162 0 20 chr4 5798161 5798260 -196530087 - MER3 DNA MER1_type -104 105 9 609 308 59 26 chr4 5798316 5798621 -196529726 - L2 LINE L2 -3 3310 2996 1150 286 175 25 chr4 5798624 5799340 -196529007 - L2 LINE L2 -506 2808 1986 1802 207 35 72 chr4 5799352 5799868 -196528479 + MLT1D LTR MaLR 3 499 -6 211 250 86 35 chr4 5799880 5799996 -196528351 - L2 LINE L2 -1340 1974 1853 243 247 214 11 chr4 5800276 5800365 -196527982 + L2 LINE L2 3166 3272 0 605 176 0 17 chr4 5800490 5800609 -196527738 - L1MC2 LINE L1 -9 6335 6219 2113 120 3 0 chr4 5800609 5800918 -196527429 - AluSx SINE Alu -2 310 1 1069 145 0 79 chr4 5800936 5801163 -196527184 - AluJo SINE Alu -12 300 92 1243 170 17 4 chr4 5801163 5801423 -196526924 - L1M3 LINE L1 -353 5818 5549 416 298 76 8 chr4 5802320 5802451 -196525896 - MIR3 SINE MIR -64 144 5 221 197 45 76 chr4 5802485 5802551 -196525796 - MIR SINE MIR -105 103 40 2281 76 0 20 chr4 5802727 5803031 -196525316 + AluY SINE Alu 1 298 -13 1596 205 58 54 chr4 5803467 5803970 -196524377 - MLT1D LTR MaLR 0 505 1 515 303 113 42 chr4 5803973 5804379 -196523968 - MLT1K LTR MaLR -28 560 126 327 296 30 54 chr4 5805115 5805316 -196523031 - MIR SINE MIR -47 215 21 2220 93 3 7 chr4 5805400 5805710 -196522637 - AluSc SINE Alu 0 309 1 373 299 36 7 chr4 5805827 5805964 -196522383 - MIR SINE MIR -81 181 41 722 286 15 0 chr4 5806762 5806958 -196521389 - MIR SINE MIR 0 262 64 1274 232 141 20 chr4 5807098 5807546 -196520801 - MLT1D LTR MaLR -2 503 1 196 239 0 0 chr4 5807570 5807616 -196520731 - L3 LINE CR1 -126 1451 1406 2822 9 0 0 chr4 5807875 5808190 -196520157 - AluYb8 SINE Alu -2 316 2 467 232 72 16 chr4 5808253 5808378 -196519969 + MIR SINE MIR 20 151 -111 833 165 0 0 chr4 5808449 5808582 -196519765 + FLAM_C SINE Alu 1 133 0 2899 194 14 45 chr4 5809890 5810510 -196517837 - MER77 LTR ERV1 0 605 5 299 242 23 117 chr4 5810553 5810817 -196517530 - L1MC4a LINE L1 -1777 6031 5793 226 241 19 0 chr4 5811693 5811747 -196516600 - MIR SINE MIR -32 230 176 246 216 91 0 chr4 5811893 5811981 -196516366 - L1MC4 LINE L1 0 8042 7947 401 271 26 58 chr4 5812291 5812446 -196515901 - MIR SINE MIR -105 157 8 376 230 11 0 chr4 5812479 5812566 -196515781 - MER117 DNA MER1_type -40 157 70 207 290 54 32 chr4 5812766 5812859 -196515488 + MIR SINE MIR 21 115 -147 185 350 41 0 chr4 5813333 5813430 -196514917 + MIR SINE MIR 110 210 -52 2013 120 0 0 chr4 5813490 5813802 -196514545 - AluSq SINE Alu 0 312 1 238 315 48 48 chr4 5814152 5814298 -196514049 + MIR SINE MIR 76 221 -41 718 177 0 0 chr4 5814431 5814555 -196513792 + FLAM_A SINE Alu 12 135 -7 330 26 0 0 chr4 5814652 5814691 -196513656 + (TG)n Simple_repeat Simple_repeat 2 40 0 309 266 13 25 chr4 5814694 5814773 -196513574 + L1MC4 LINE L1 6648 6725 -1317 482 279 95 54 chr4 5815435 5815750 -196512597 + HAL1 LINE L1 549 876 -1631 887 259 112 61 chr4 5815788 5816490 -196511857 + HAL1 LINE L1 961 1985 -522 1389 171 16 68 chr4 5816490 5816811 -196511536 + AluJo SINE Alu 1 304 -8 887 259 112 61 chr4 5816811 5817007 -196511340 + HAL1 LINE L1 1985 2169 -338 372 271 53 13 chr4 5817075 5817226 -196511121 + HAL1 LINE L1 2018 2174 -333 3022 110 43 0 chr4 5817816 5818080 -196510267 - L1P4 LINE L1 -412 5756 5464 1985 114 3 20 chr4 5818080 5818386 -196509961 - AluSq SINE Alu -12 301 1 3022 110 43 0 chr4 5818386 5818567 -196509780 - L1P4 LINE L1 -704 5464 5292 433 221 73 7 chr4 5818610 5818746 -196509601 - L1MC5 LINE L1 -753 7208 7064 1609 103 22 0 chr4 5819797 5820029 -196508318 + L1PA13 LINE L1 5927 6163 0 2642 158 16 5 chr4 5820165 5820647 -196507700 + L1MA4 LINE L1 5546 6045 -123 1911 79 0 0 chr4 5820684 5820924 -196507423 + AluSc SINE Alu 1 240 -69 320 287 11 0 chr4 5822122 5822209 -196506138 + MIR SINE MIR 86 173 -89 581 213 0 28 chr4 5822216 5822357 -196505990 - L1MA10 LINE L1 0 6334 6198 387 186 17 169 chr4 5822369 5822495 -196505852 - L1ME1 LINE L1 -174 5992 5895 2068 114 0 0 chr4 5822495 5822798 -196505549 - AluSx SINE Alu 0 303 1 387 186 17 169 chr4 5822798 5822841 -196505506 - L1ME1 LINE L1 -271 5895 5847 2049 247 144 25 chr4 5822958 5823769 -196504578 - HAL1 LINE L1 -1478 1029 122 419 194 43 21 chr4 5824088 5824181 -196504166 - MIR SINE MIR -100 162 68 3040 120 12 58 chr4 5824587 5825262 -196503085 - L1PA3 LINE L1 -3 6152 5509 2083 104 20 0 chr4 5825704 5826001 -196502346 - AluSq SINE Alu -10 303 1 1228 188 38 15 chr4 5826309 5826570 -196501777 - L1MA9 LINE L1 -38 6274 6008 406 221 26 62 chr4 5826903 5827016 -196501331 - MIR SINE MIR -68 194 86 313 163 0 0 chr4 5827120 5827169 -196501178 - MLT2D LTR ERVL 0 414 366 534 128 284 9 chr4 5827173 5827280 -196501067 + MER2 DNA MER2_type 3 139 -206 3221 106 7 28 chr4 5827280 5827741 -196500606 + MER1A DNA MER1_type 1 451 -78 1119 219 192 39 chr4 5828615 5828940 -196499407 + MLT1D LTR MaLR 1 411 -94 1035 206 0 0 chr4 5828940 5829163 -196499184 - L1MA4 LINE L1 -1 6299 6077 1119 219 192 39 chr4 5829163 5829275 -196499072 + MLT1D LTR MaLR 411 505 0 232 296 122 9 chr4 5829434 5829549 -196498798 + MIR SINE MIR 120 247 -15 243 269 0 0 chr4 5830249 5830301 -196498046 + MIR SINE MIR 209 260 -2 320 381 28 23 chr4 5831307 5831483 -196496864 + MIR SINE MIR 10 186 -76 243 0 0 0 chr4 5831523 5831550 -196496797 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 306 0 0 0 chr4 5831549 5831583 -196496764 + (GA)n Simple_repeat Simple_repeat 2 35 0 748 215 48 27 chr4 5831584 5831770 -196496577 - MIR SINE MIR -72 190 1 204 244 22 0 chr4 5831789 5831834 -196496513 + L2 LINE L2 3210 3255 -17 532 237 14 3 chr4 5831935 5832294 -196496053 + (TGGA)n Simple_repeat Simple_repeat 1 363 0 544 237 23 62 chr4 5832620 5832877 -196495470 + Charlie3 DNA MER1_type 2458 2704 -6 414 115 33 0 chr4 5833013 5833074 -196495273 + MER2 DNA MER2_type 283 345 0 1667 203 72 6 chr4 5833074 5833423 -196494924 - MLT2D LTR ERVL -42 372 1 1301 249 76 15 chr4 5833947 5834520 -196493827 - L2 LINE L2 0 3313 2700 846 298 112 8 chr4 5834696 5835108 -196493239 - L2 LINE L2 -204 3109 2655 331 314 51 8 chr4 5835197 5835315 -196493032 + L2 LINE L2 3189 3311 -2 294 95 0 0 chr4 5835316 5835358 -196492989 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 207 0 0 0 chr4 5835775 5835798 -196492549 + (A)n Simple_repeat Simple_repeat 1 23 0 517 306 39 69 chr4 5836050 5836410 -196491937 - LTR67 LTR ERVL -124 433 85 1027 129 14 37 chr4 5836418 5836554 -196491793 - MLT1A2 LTR MaLR -1 373 235 345 47 0 0 chr4 5836554 5836597 -196491750 + (GA)n Simple_repeat Simple_repeat 2 44 0 1027 129 14 37 chr4 5836597 5836779 -196491568 - MLT1A2 LTR MaLR -139 235 1 306 100 183 0 chr4 5836866 5836926 -196491421 + L2 LINE L2 3184 3254 -18 21 36 0 0 chr4 5837339 5837367 -196490980 + AT_rich Low_complexity Low_complexity 1 28 0 2418 61 0 0 chr4 5837459 5837753 -196490594 + AluY SINE Alu 1 294 -17 294 230 73 51 chr4 5837760 5837938 -196490409 + L1MC/D LINE L1 5258 5439 -2369 1901 246 50 19 chr4 5837954 5838719 -196489628 + L1ME1 LINE L1 60 897 -5499 2512 239 49 34 chr4 5838720 5840734 -196487613 + L1ME1 LINE L1 3028 5212 -1023 216 0 0 0 chr4 5840734 5840758 -196487589 + (CA)n Simple_repeat Simple_repeat 2 25 0 2512 239 49 34 chr4 5840758 5841791 -196486556 + L1ME1 LINE L1 5212 6228 -7 326 315 0 0 chr4 5841801 5841893 -196486454 + L1MC/D LINE L1 5427 5518 -2290 21 0 0 0 chr4 5841986 5842007 -196486340 + AT_rich Low_complexity Low_complexity 1 21 0 1112 226 33 7 chr4 5843382 5843554 -196484793 - L1MEc LINE L1 -4236 2160 1975 4154 93 35 10 chr4 5843554 5844145 -196484202 + MER4B LTR ERV1 5 610 0 1112 226 33 7 chr4 5844145 5844278 -196484069 - L1MEc LINE L1 -4421 1975 1847 1779 165 71 19 chr4 5844284 5844648 -196483699 - L1MB5 LINE L1 -8 6166 5784 1748 184 127 29 chr4 5844745 5845163 -196483184 - LTR2B LTR ERV1 0 490 32 4013 263 62 20 chr4 5845181 5845993 -196482354 - L1MEc LINE L1 -4631 1765 989 883 86 78 0 chr4 5845993 5846121 -196482226 + MER85 DNA T2_type 1 138 -1 4013 263 62 20 chr4 5846121 5846971 -196481376 - L1MEc LINE L1 -5407 989 36 437 184 31 20 chr4 5846971 5847069 -196481278 + MIR SINE MIR 162 260 -2 2879 149 7 2 chr4 5847494 5847931 -196480416 + MER72 LTR ERV1 6 444 -278 2236 114 64 9 chr4 5847931 5848274 -196480073 - THE1C LTR MaLR 0 375 14 2020 135 0 0 chr4 5848268 5848556 -196479791 + MER72 LTR ERV1 435 722 0 * 4154 175 17 11 chr4 5849592 5850030 -196478317 + MER50 LTR ERV1 1 446 -288 2498 92 53 8 chr4 5850030 5850389 -196477958 + THE1C LTR MaLR 1 375 0 4154 175 17 11 chr4 5850389 5850657 -196477690 + MER50 LTR ERV1 446 711 -23 44615 40 2 2 chr4 5850748 5856635 -196471712 + L1PA3 LINE L1 1 5887 -268 730 271 128 18 chr4 5856878 5857159 -196471188 - L2 LINE L2 -3 3310 2999 309 336 0 9 chr4 5857343 5857453 -196470894 + MIR SINE MIR 45 153 -55 420 257 83 0 chr4 5857462 5857571 -196470776 - L2 LINE L2 -3 3269 3152 962 201 67 48 chr4 5857574 5857843 -196470504 + MLT1A2 LTR MaLR 2 275 -99 1689 164 0 11 chr4 5857857 5858144 -196470203 + AluJb SINE Alu 5 288 -24 675 275 29 24 chr4 5858244 5858451 -196469896 + MIR SINE MIR 21 228 -34 202 308 169 6 chr4 5860588 5860760 -196467587 + L2 LINE L2 2854 3053 -219 189 107 0 0 chr4 5860867 5860895 -196467452 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 181 219 0 0 chr4 5860896 5860928 -196467419 - L2 LINE L2 -12 3260 3229 430 238 54 48 chr4 5861001 5861148 -196467199 + MIR SINE MIR 8 155 -107 236 226 30 52 chr4 5861298 5861419 -196466928 + MLT1J LTR MaLR 4 157 -331 6756 41 0 1 chr4 5861608 5862410 -196465937 + L1PA4 LINE L1 5352 6152 -3 7221 184 169 16 chr4 5862469 5863985 -196464362 + MER52A LTR ERV1 1 1749 -6 505 224 131 90 chr4 5864002 5864247 -196464100 + MLT1J LTR MaLR 257 511 0 464 219 31 25 chr4 5864440 5864600 -196463747 - L1ME4a LINE L1 -2 6119 5959 314 123 18 0 chr4 5864621 5864678 -196463669 + CT-rich Low_complexity Low_complexity 1 58 0 369 294 69 50 chr4 5864886 5865136 -196463211 - MIR SINE MIR -5 257 2 333 314 147 5 chr4 5865156 5865347 -196463000 - MIR SINE MIR -13 249 32 1987 123 99 15 chr4 5865463 5865797 -196462550 + THE1B LTR MaLR 3 364 0 12449 79 6 0 chr4 5865797 5867363 -196460984 + THE1B-int LTR MaLR 1 1575 -5 2342 99 51 26 chr4 5867369 5867721 -196460626 + THE1B LTR MaLR 4 364 0 665 287 54 41 chr4 5867723 5868092 -196460255 - HAL1 LINE L1 -100 2407 2034 392 219 31 0 chr4 5868089 5868185 -196460162 + L1MC5 LINE L1 7690 7788 -173 * 613 297 81 28 chr4 5868328 5868648 -196459699 + L1MEc LINE L1 208 544 -5852 2615 117 33 14 chr4 5868694 5869113 -196459234 - MSTA LTR MaLR -1 427 1 690 199 97 58 chr4 5869181 5869407 -196458940 + L1MB8 LINE L1 5944 6178 0 732 288 30 9 chr4 5869408 5869745 -196458602 + L1MEc LINE L1 673 1016 -5380 1476 272 67 54 chr4 5869774 5870388 -196457959 + L1MCb LINE L1 3 624 -5421 478 171 29 19 chr4 5870415 5870520 -196457827 - L1MC5 LINE L1 -173 7788 7683 * 577 262 65 44 chr4 5870508 5870686 -196457661 + HAL1 LINE L1 2034 2220 -287 234 0 0 0 chr4 5870686 5870712 -196457635 + (TG)n Simple_repeat Simple_repeat 2 27 0 577 262 65 44 chr4 5870712 5870781 -196457566 + HAL1 LINE L1 2220 2286 -221 6195 246 49 15 chr4 5870827 5871569 -196456778 + L1MCb LINE L1 2442 3157 -3407 2120 116 0 7 chr4 5871569 5871879 -196456468 + AluSg SINE Alu 1 308 -2 6195 246 49 15 chr4 5871879 5873311 -196455036 + L1MCb LINE L1 3157 4647 -1917 580 324 5 0 chr4 5873415 5873600 -196454747 - MIR SINE MIR -38 224 39 2167 103 7 0 chr4 5873864 5874166 -196454181 - AluSq SINE Alu -9 304 1 196 296 122 61 chr4 5874350 5874644 -196453703 - L2 LINE L2 -46 3226 2915 331 311 49 44 chr4 5874662 5874845 -196453502 - L2 LINE L2 -508 2806 2623 2436 162 76 8 chr4 5874977 5875464 -196452883 + L1MB5 LINE L1 5592 6111 -63 316 268 173 36 chr4 5876090 5876258 -196452089 + L1ME4a LINE L1 5853 6043 -78 206 341 22 52 chr4 5876419 5876554 -196451793 - MIR3 SINE MIR -40 168 38 339 175 16 16 chr4 5876748 5876811 -196451536 + MIR3 SINE MIR 133 195 -13 188 341 141 22 chr4 5877145 5877280 -196451067 - L2 LINE L2 -598 2716 2566 306 269 121 0 chr4 5877789 5877930 -196450417 - L1M4 LINE L1 -1301 4845 4688 2155 107 3 0 chr4 5878024 5878323 -196450024 + AluSq SINE Alu 3 302 -11 898 251 31 4 chr4 5879463 5879690 -196448657 - MIR SINE MIR -1 261 29 260 314 101 0 chr4 5879762 5879921 -196448426 + MER91A DNA MER1_type 22 196 0 407 215 13 0 chr4 5880306 5880385 -196447962 + MIR SINE MIR 2 81 -181 2795 187 19 0 chr4 5880387 5880873 -196447474 + MER68 LTR ERV1 3 497 -65 * 4067 117 23 143 chr4 5880868 5881128 -196447219 - Tigger3b DNA MER2_type -1797 1232 943 2034 108 17 0 chr4 5881128 5881415 -196446932 + AluSx SINE Alu 21 312 0 4067 117 23 143 chr4 5881415 5881596 -196446751 - Tigger3b DNA MER2_type -2086 943 742 1857 150 3 10 chr4 5881596 5881896 -196446451 - AluSx SINE Alu -14 298 1 4067 117 23 143 chr4 5881896 5881975 -196446372 - Tigger3b DNA MER2_type -2287 742 655 204 40 0 0 chr4 5881975 5882000 -196446347 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 4067 117 23 143 chr4 5882000 5882884 -196445463 - Tigger3b DNA MER2_type -2374 655 1 392 116 29 14 chr4 5882884 5882953 -196445394 + MER68 LTR ERV1 491 560 -2 562 276 61 33 chr4 5882955 5883136 -196445211 + MIR SINE MIR 77 262 0 784 243 70 27 chr4 5884251 5884507 -196443840 + MIR SINE MIR 3 259 -3 200 244 0 23 chr4 5884518 5884566 -196443781 + (TAG)n Simple_repeat Simple_repeat 3 50 -36 2210 109 3 0 chr4 5884566 5884877 -196443470 + AluSq SINE Alu 1 312 -1 200 244 0 23 chr4 5884877 5884914 -196443433 + (TAG)n Simple_repeat Simple_repeat 50 86 0 2283 96 0 0 chr4 5884934 5885236 -196443111 + AluSq SINE Alu 1 302 -11 556 244 8 8 chr4 5885831 5885954 -196442393 - L2 LINE L2 -8 3305 3183 216 0 0 0 chr4 5886652 5886676 -196441671 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 186 254 34 17 chr4 5886767 5886826 -196441521 + MIR SINE MIR 81 140 -68 1673 182 65 11 chr4 5887033 5887401 -196440946 + MLT1B LTR MaLR 1 388 -2 293 302 59 27 chr4 5887403 5887605 -196440742 - MIR SINE MIR 0 262 12 33 25 0 0 chr4 5888597 5888637 -196439710 + AT_rich Low_complexity Low_complexity 1 40 0 516 323 114 24 chr4 5889054 5889388 -196438959 - L3 LINE CR1 -17 1560 1197 367 322 128 0 chr4 5889400 5889627 -196438720 - L2 LINE L2 -509 2805 2550 524 189 28 9 chr4 5889838 5889944 -196438403 - MLT1C LTR MaLR -7 460 353 262 273 55 55 chr4 5890146 5890256 -196438091 - MER5A DNA MER1_type 0 189 80 1862 186 83 34 chr4 5890259 5890704 -196437643 - MLT1C LTR MaLR 0 467 1 344 403 14 0 chr4 5890728 5890867 -196437480 + L3 LINE CR1 1436 1576 -1 272 91 23 0 chr4 5890978 5891022 -196437325 + L1MC3 LINE L1 7550 7594 -191 926 155 83 6 chr4 5891023 5891204 -196437143 + L1MC2 LINE L1 6138 6332 -12 2318 72 0 0 chr4 5891332 5891624 -196436723 + AluSx SINE Alu 1 292 -20 354 98 0 0 chr4 5893156 5893207 -196435140 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 188 283 0 0 chr4 5893340 5893386 -196434961 - L2 LINE L2 -8 3264 3219 194 283 0 0 chr4 5893562 5893608 -196434739 + MIR SINE MIR 30 75 -133 180 263 30 50 chr4 5893682 5893781 -196434566 + L2 LINE L2 920 1016 -2298 1523 221 85 32 chr4 5893803 5894264 -196434083 + MLT1D LTR MaLR 21 505 0 223 213 147 13 chr4 5894377 5894452 -196433895 - MIR SINE MIR -173 89 5 310 302 223 0 chr4 5894537 5894802 -196433545 + L2 LINE L2 1228 1551 -1763 379 274 18 97 chr4 5895015 5895241 -196433106 - L2 LINE L2 -28 3285 3078 189 345 0 0 chr4 5895581 5895639 -196432708 + L2 LINE L2 3215 3272 0 198 333 109 14 chr4 5895710 5895848 -196432499 + MIR SINE MIR 88 238 -24 291 270 92 50 chr4 5896121 5896261 -196432086 + MIR3 SINE MIR 71 237 -25 185 259 0 69 chr4 5896839 5896897 -196431450 + L2 LINE L2 3249 3302 -11 197 235 12 99 chr4 5898151 5898232 -196430115 - MIR SINE MIR -116 146 73 * 254 343 20 0 chr4 5898231 5898330 -196430017 + MIR SINE MIR 52 152 -110 893 243 53 0 chr4 5899159 5899365 -196428982 + MIR SINE MIR 13 229 -33 234 303 66 53 chr4 5899452 5899680 -196428667 + L2 LINE L2 2806 3036 -236 803 111 0 22 chr4 5899681 5899816 -196428531 + L1PA13 LINE L1 6031 6162 -1 287 29 29 105 chr4 5899869 5899974 -196428373 + (TATAA)n Simple_repeat Simple_repeat 3 99 0 324 114 53 35 chr4 5899977 5900144 -196428203 + (TTATA)n Simple_repeat Simple_repeat 1 169 0 368 270 48 100 chr4 5900144 5900374 -196427973 + L2 LINE L2 3015 3232 -40 228 275 46 69 chr4 5900775 5900906 -196427441 + MIR SINE MIR 85 212 -50 2264 102 0 0 chr4 5901043 5901347 -196427000 + AluSx SINE Alu 5 308 -4 230 182 36 18 chr4 5901348 5901403 -196426944 - MIR3 SINE MIR -13 195 140 526 295 87 12 chr4 5901460 5901633 -196426714 - MIR SINE MIR -4 258 73 432 192 79 68 chr4 5902114 5902291 -196426056 + LTR16C LTR ERVL 298 476 -15 214 230 92 7 chr4 5902291 5902443 -196425904 + (GTGTG)n Simple_repeat Simple_repeat 3 167 0 292 319 104 25 chr4 5902515 5902565 -196425782 + MER5B DNA MER1_type 1 46 -132 870 238 6 0 chr4 5902565 5902737 -196425610 + FAM SINE Alu 2 174 -1 292 319 104 25 chr4 5902737 5902849 -196425498 + MER5B DNA MER1_type 46 176 -2 253 314 41 0 chr4 5903121 5903242 -196425105 + MIR3 SINE MIR 7 132 -76 234 188 0 0 chr4 5903607 5903655 -196424692 - HAL1b LINE L1 -556 792 745 460 317 108 34 chr4 5904001 5904474 -196423873 - HAL1 LINE L1 -590 1917 1410 486 286 181 26 chr4 5904486 5904752 -196423595 + L1ME4a LINE L1 5813 6119 -2 210 158 0 0 chr4 5904754 5904792 -196423555 + (TTA)n Simple_repeat Simple_repeat 3 40 0 295 235 81 59 chr4 5904835 5904971 -196423376 + LTR16A LTR ERVL 282 420 -30 * 2732 176 35 6 chr4 5904951 5905434 -196422913 - MER68 LTR ERV1 -65 497 1 1739 201 50 42 chr4 5906221 5906679 -196421668 + MLT1C LTR MaLR 6 467 0 281 355 83 0 chr4 5906681 5906802 -196421545 - MIR SINE MIR -54 208 78 2242 219 38 20 chr4 5907706 5908319 -196420028 + L1M4 LINE L1 4243 4866 -1280 * 5862 157 34 81 chr4 5908318 5908944 -196419403 + L1MC3 LINE L1 5914 6443 -1342 1543 192 27 3 chr4 5908944 5909068 -196419279 + AluJb SINE Alu 1 121 -191 216 0 0 0 chr4 5909068 5909092 -196419255 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1543 192 27 3 chr4 5909092 5909264 -196419083 + AluJb SINE Alu 121 304 -8 5862 157 34 81 chr4 5909264 5909979 -196418368 + L1MC3 LINE L1 6443 7191 -594 1998 131 38 35 chr4 5910321 5910687 -196417660 - THE1C LTR MaLR -8 367 1 23 0 0 0 chr4 5910707 5910730 -196417617 + AT_rich Low_complexity Low_complexity 1 23 0 395 296 127 21 chr4 5910787 5910929 -196417418 - MIR SINE MIR -74 188 32 267 265 61 41 chr4 5911282 5911380 -196416967 - MIR SINE MIR -162 100 1 332 346 31 25 chr4 5911687 5911846 -196416501 + MIR SINE MIR 37 196 -66 391 288 11 34 chr4 5912168 5912301 -196416046 + MIR SINE MIR 16 150 -58 567 234 37 92 chr4 5913328 5913383 -196414964 - MER63A DNA MER1_type -1478 210 154 1903 131 17 3 chr4 5913383 5913673 -196414674 - AluSc SINE Alu -15 294 1 567 234 37 92 chr4 5913673 5913835 -196414512 - MER63A DNA MER1_type -1534 154 5 330 206 0 29 chr4 5914294 5914362 -196413985 - L3 LINE CR1 -533 1044 979 197 303 10 61 chr4 5914491 5914590 -196413757 - L2 LINE L2 -853 2461 2368 200 368 88 7 chr4 5914629 5914765 -196413582 - L3 LINE CR1 -1026 551 405 2141 71 0 7 chr4 5915444 5915726 -196412621 + AluSx SINE Alu 23 302 -10 294 333 71 0 chr4 5916014 5916140 -196412207 + L2 LINE L2 3138 3272 0 26 0 0 0 chr4 5916988 5917014 -196411333 + AT_rich Low_complexity Low_complexity 1 26 0 308 263 10 10 chr4 5918049 5918148 -196410199 + (CA)n Simple_repeat Simple_repeat 1 99 0 1184 247 241 10 chr4 5919036 5919522 -196408825 + L1MD2 LINE L1 5730 6327 -32 305 198 64 10 chr4 5919528 5919602 -196408745 + AluJ/FLAM SINE Alu 1 60 -242 249 301 139 8 chr4 5919602 5919861 -196408486 - L2 LINE L2 -1163 2151 1859 372 351 119 21 chr4 5919896 5920283 -196408064 + L2 LINE L2 2843 3267 -5 4532 80 17 19 chr4 5920549 5921067 -196407280 + L1PB2 LINE L1 5513 6031 -120 2354 75 0 7 chr4 5921067 5921372 -196406975 + AluSx SINE Alu 1 303 -9 4532 80 17 19 chr4 5921372 5921493 -196406854 + L1PB2 LINE L1 6031 6151 0 1711 211 29 27 chr4 5921743 5922156 -196406191 + MLT2D LTR ERVL 1 414 0 1263 185 22 128 chr4 5922321 5922727 -196405620 + MLT1A1 LTR MaLR 1 363 -2 323 295 62 18 chr4 5923012 5923124 -196405223 + MIR SINE MIR 107 223 -39 1596 196 164 56 chr4 5923208 5923758 -196404589 + MLT1E2 LTR MaLR 18 626 0 269 186 57 43 chr4 5925539 5925609 -196402738 - L1ME4a LINE L1 -78 6043 5973 756 194 114 0 chr4 5925870 5926045 -196402302 + L1MD3 LINE L1 7793 7987 -8 317 292 62 80 chr4 5926659 5926984 -196401363 + L2 LINE L2 2915 3233 -39 735 335 13 4 chr4 5927082 5927309 -196401038 - MIR SINE MIR -33 229 1 194 318 39 70 chr4 5928174 5928303 -196400044 + L2 LINE L2 3111 3235 -37 478 282 35 53 chr4 5928363 5928590 -196399757 - MIR SINE MIR -12 250 28 203 256 0 0 chr4 5928607 5928650 -196399697 + L2 LINE L2 3271 3313 0 209 315 13 0 chr4 5928668 5928755 -196399592 + GA-rich Low_complexity Low_complexity 1 88 0 368 292 128 65 chr4 5928765 5929118 -196399229 - L2 LINE L2 -63 3209 2835 421 268 190 0 chr4 5929249 5929391 -196398956 + MIR SINE MIR 20 188 -74 1869 137 23 0 chr4 5929594 5929893 -196398454 + AluSx SINE Alu 1 306 -6 259 314 69 0 chr4 5930579 5930681 -196397666 + MIR3 SINE MIR 11 119 -89 2883 128 16 5 chr4 5930830 5931253 -196397094 + MSTA LTR MaLR 1 428 0 7881 181 47 7 chr4 5931255 5932760 -196395587 + MSTA-int LTR MaLR 3 1567 -13 2584 111 47 8 chr4 5932761 5933147 -196395200 + MSTA LTR MaLR 28 428 0 1165 305 55 19 chr4 5933155 5933896 -196394451 - L1M4 LINE L1 -2231 3915 3148 806 104 0 17 chr4 5933919 5934034 -196394313 - AluSg/x SINE Alu -17 295 183 24 32 0 0 chr4 5934309 5934340 -196394007 + AT_rich Low_complexity Low_complexity 1 31 0 496 245 193 30 chr4 5934632 5934865 -196393482 - L2 LINE L2 -940 2374 2104 1322 190 43 4 chr4 5934944 5935090 -196393257 - AluJo SINE Alu -30 282 120 207 0 0 0 chr4 5935090 5935113 -196393234 + (TA)n Simple_repeat Simple_repeat 1 23 0 1322 190 43 4 chr4 5935113 5935224 -196393123 - AluJo SINE Alu -192 120 15 2181 207 21 31 chr4 5935576 5936098 -196392249 - Charlie1b DNA MER1_type -6 517 1 261 283 11 33 chr4 5936119 5936211 -196392136 - L2 LINE L2 -62 3210 3121 269 327 44 9 chr4 5936265 5936378 -196391969 + L2 LINE L2 2904 3020 -252 197 284 0 15 chr4 5936475 5936523 -196391824 + L2 LINE L2 3207 3254 -18 1218 67 0 0 chr4 5936523 5936701 -196391646 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 291 28 0 0 chr4 5936701 5936737 -196391610 + (CATA)n Simple_repeat Simple_repeat 1 36 0 197 284 0 15 chr4 5936737 5936754 -196391593 + L2 LINE L2 3252 3272 0 203 256 49 12 chr4 5936856 5936938 -196391409 - MIR SINE MIR -65 143 59 193 261 101 43 chr4 5937385 5937454 -196390893 + MIR SINE MIR 109 181 -81 329 281 99 18 chr4 5938140 5938329 -196390018 - MIR SINE MIR -33 229 29 826 168 8 0 chr4 5939986 5940117 -196388230 - FLAM_C SINE Alu -10 133 2 214 242 0 97 chr4 5940328 5940390 -196387957 + MIR3 SINE MIR 99 154 -54 202 229 202 9 chr4 5941172 5941281 -196387066 + MIR SINE MIR 119 248 -14 21 36 0 0 chr4 5941521 5941549 -196386798 + GC_rich Low_complexity Low_complexity 1 28 0 555 228 179 0 chr4 5942442 5942587 -196385760 - MIR SINE MIR -8 254 84 376 310 76 18 chr4 5943138 5943309 -196385038 - MIR SINE MIR -75 187 7 210 330 44 0 chr4 5943314 5943405 -196384942 - MIR SINE MIR -96 166 72 202 260 231 0 chr4 5943393 5943497 -196384850 - L2 LINE L2 -697 2617 2490 * 325 278 125 65 chr4 5943562 5943645 -196384702 + L2 LINE L2 2698 2775 -497 2240 92 3 0 chr4 5943645 5943949 -196384398 + AluSx SINE Alu 1 305 -7 1551 118 4 0 chr4 5943949 5944175 -196384172 + AluSp SINE Alu 76 304 -9 325 278 125 65 chr4 5944175 5944499 -196383848 + L2 LINE L2 2774 3123 -149 1385 239 75 66 chr4 5944572 5945041 -196383306 - HAL1 LINE L1 0 2507 2029 1748 179 0 22 chr4 5945041 5945360 -196382987 - AluJb SINE Alu 0 312 1 1385 239 75 66 chr4 5945360 5945544 -196382803 - HAL1 LINE L1 -478 2029 1848 872 193 34 6 chr4 5945545 5945721 -196382626 + MER5A DNA MER1_type 6 186 -3 2168 229 117 41 chr4 5945727 5945988 -196382359 - HAL1 LINE L1 -696 1811 1571 2333 90 0 0 chr4 5945988 5946289 -196382058 - AluSg SINE Alu -9 301 1 2168 229 117 41 chr4 5946289 5946305 -196382042 - HAL1 LINE L1 -936 1571 1558 4150 159 44 24 chr4 5946305 5947072 -196381275 - LTR39 LTR ERV1 0 783 1 2168 229 117 41 chr4 5947072 5947692 -196380655 - HAL1 LINE L1 -949 1558 845 974 288 142 12 chr4 5947838 5948262 -196380085 + L2 LINE L2 2829 3307 -6 3280 224 11 3 chr4 5948370 5949017 -196379330 + MER82 DNA MER2_type 2 653 0 1275 259 63 46 chr4 5949743 5950268 -196378079 - L1ME2 LINE L1 -11 6153 5620 362 322 22 44 chr4 5950521 5950701 -196377646 - MIR SINE MIR -57 205 30 2124 177 46 37 chr4 5951425 5951832 -196376515 + L1MB8 LINE L1 5655 6070 -108 2243 125 3 0 chr4 5951832 5952129 -196376218 + AluSx SINE Alu 1 298 -14 2124 177 46 37 chr4 5952129 5952240 -196376107 + L1MB8 LINE L1 6070 6178 0 521 268 92 44 chr4 5952269 5952497 -196375850 + MIR SINE MIR 14 252 -10 2332 105 0 3 chr4 5953430 5953735 -196374612 - AluSg SINE Alu -6 304 1 594 206 58 13 chr4 5953941 5954096 -196374251 + MER45A DNA AcHobo 1 162 -16 200 171 143 71 chr4 5954263 5954333 -196374014 + L3b LINE CR1 1489 1563 -20 * 257 269 25 84 chr4 5954312 5954431 -196373916 + MIR SINE MIR 104 215 -47 533 284 20 0 chr4 5954737 5954885 -196373462 + MIR SINE MIR 2 152 -110 6619 72 25 0 chr4 5954973 5956153 -196372194 - L1PA10 LINE L1 0 6168 4960 10417 28 0 0 chr4 5956819 5958818 -196369529 - L1PA2 LINE L1 0 6155 4157 203 260 0 20 chr4 5958893 5958943 -196369404 - MIR SINE MIR -68 140 92 669 235 0 0 chr4 5959212 5959391 -196368956 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 512 277 84 25 chr4 5959983 5960185 -196368162 - MIR SINE MIR -12 250 37 584 330 85 0 chr4 5960291 5960515 -196367832 + MIR SINE MIR 12 254 -8 356 225 22 0 chr4 5960553 5960642 -196367705 - MER103 DNA DNA -73 93 3 180 350 41 0 chr4 5960990 5961087 -196367260 - L2 LINE L2 -304 2968 2868 311 213 13 0 chr4 5961969 5962044 -196366303 - MIR SINE MIR -64 144 69 188 286 18 0 chr4 5962187 5962243 -196366104 - MIR SINE MIR -13 249 193 532 196 65 36 chr4 5962334 5962472 -196365875 - MIR SINE MIR -86 176 35 223 182 45 0 chr4 5962875 5962919 -196365428 + MIR SINE MIR 108 153 -109 1859 169 7 3 chr4 5962977 5963278 -196365069 + AluJb SINE Alu 1 302 -10 470 233 169 29 chr4 5964041 5964213 -196364134 - MIR SINE MIR -14 248 53 1730 189 14 0 chr4 5964607 5964734 -196363613 + AluJo SINE Alu 1 125 -187 189 0 0 0 chr4 5964734 5964755 -196363592 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1730 189 14 0 chr4 5964755 5964924 -196363423 + AluJo SINE Alu 125 301 -11 181 266 266 64 chr4 5965343 5965452 -196362895 - L2 LINE L2 -40 3232 3102 387 253 32 11 chr4 5965582 5965677 -196362670 + MIR SINE MIR 24 120 -88 473 190 15 0 chr4 5965893 5965990 -196362357 - MIR SINE MIR -65 143 45 583 268 122 58 chr4 5966388 5966530 -196361817 + L1MD2 LINE L1 5989 6121 -238 255 61 0 0 chr4 5966530 5966563 -196361784 + (CA)n Simple_repeat Simple_repeat 2 34 0 583 268 122 58 chr4 5966563 5966704 -196361643 + L1MD2 LINE L1 6121 6298 -61 15408 120 24 29 chr4 5966704 5968879 -196359468 + Tigger1 DNA MER2_type 3 2166 -252 1766 110 0 4 chr4 5968879 5969115 -196359232 - AluSc SINE Alu -74 235 1 15408 120 24 29 chr4 5969115 5969367 -196358980 + Tigger1 DNA MER2_type 2166 2418 0 583 268 122 58 chr4 5969367 5969411 -196358936 + L1MD2 LINE L1 6298 6338 -21 391 269 52 72 chr4 5969616 5969809 -196358538 + MIR SINE MIR 40 228 -34 605 187 13 47 chr4 5969863 5970013 -196358334 + MER58B DNA MER1_type 197 341 0 834 168 0 0 chr4 5970033 5970164 -196358183 + FLAM_C SINE Alu 1 131 -2 2666 200 26 17 chr4 5970216 5970437 -196357910 + L1MC/D LINE L1 4839 5057 -1302 2453 106 0 3 chr4 5970437 5970749 -196357598 + AluSx SINE Alu 2 312 0 2666 200 26 17 chr4 5970749 5971473 -196356874 + L1MC/D LINE L1 5057 5788 -571 238 170 85 0 chr4 5971675 5971722 -196356625 + L2 LINE L2 3263 3313 0 259 288 7 7 chr4 5971830 5971915 -196356432 + GA-rich Low_complexity Low_complexity 1 85 0 223 254 16 16 chr4 5972443 5972506 -196355841 + MIR SINE MIR 20 82 -180 180 228 0 0 chr4 5972636 5972693 -196355654 + (CAT)n Simple_repeat Simple_repeat 3 59 0 318 330 9 0 chr4 5972705 5972814 -196355533 + (CAT)n Simple_repeat Simple_repeat 2 111 0 404 264 6 0 chr4 5972827 5973001 -196355346 + (CAT)n Simple_repeat Simple_repeat 1 175 0 1273 201 95 77 chr4 5973024 5973497 -196354850 - MER66A LTR ERV1 0 478 97 344 277 5 0 chr4 5973566 5973778 -196354569 + (CAT)n Simple_repeat Simple_repeat 1 213 0 426 311 37 0 chr4 5973996 5974131 -196354216 - MIR SINE MIR -37 225 86 200 259 19 0 chr4 5974133 5974187 -196354160 + (TAA)n Simple_repeat Simple_repeat 2 56 0 219 292 0 45 chr4 5974198 5974287 -196354060 + MIR SINE MIR 16 100 -108 358 328 56 0 chr4 5974429 5974554 -196353793 + MIR SINE MIR 57 188 -74 313 282 76 112 chr4 5976018 5976401 -196351946 - L2 LINE L2 -2 3270 2902 1089 140 0 0 chr4 5978705 5979063 -196349284 + (TCCA)n Simple_repeat Simple_repeat 1 358 0 616 211 21 84 chr4 5979107 5979297 -196349050 - MER5B DNA MER1_type 0 178 1 404 324 21 14 chr4 5979338 5979483 -196348864 - MER5B DNA MER1_type -32 146 1 1224 85 5 70 chr4 5979486 5979685 -196348662 + MER30B DNA MER1_type 1 186 -4 394 311 13 12 chr4 5979687 5979815 -196348532 + MIR SINE MIR 34 156 -64 317 222 37 0 chr4 5980125 5980206 -196348141 + MER5A DNA MER1_type 4 87 -102 211 286 0 0 chr4 5980674 5980723 -196347624 - L2 LINE L2 -6 3307 3259 908 291 23 16 chr4 5980729 5980987 -196347360 + MIR SINE MIR 1 260 -2 287 366 10 0 chr4 5981351 5981452 -196346895 - MIR SINE MIR -3 259 158 227 372 27 16 chr4 5984297 5984480 -196343867 + MIR SINE MIR 70 254 -8 703 228 54 11 chr4 5984880 5985064 -196343283 + MIR SINE MIR 1 192 -70 210 347 10 0 chr4 5985615 5985713 -196342634 + (TGAA)n Simple_repeat Simple_repeat 1 99 0 446 257 35 20 chr4 5987248 5987400 -196340947 + MIR SINE MIR 32 185 -62 1463 190 15 90 chr4 5987689 5988079 -196340268 - MLT1B LTR MaLR -2 388 28 446 147 186 39 chr4 5988046 5988175 -196340172 - MLT1B LTR MaLR -242 148 1 * 1251 220 66 42 chr4 5988177 5988602 -196339745 + MLT1C LTR MaLR 17 463 -4 237 364 30 0 chr4 5988625 5988724 -196339623 - MIR SINE MIR -35 227 126 255 276 35 11 chr4 5988841 5988928 -196339419 + MIR SINE MIR 31 119 -89 219 350 0 40 chr4 5988936 5989036 -196339311 - MIR SINE MIR -159 103 8 3279 150 53 26 chr4 5989042 5989628 -196338719 - LTR43 LTR ERV1 0 602 1 307 214 29 14 chr4 5989642 5989712 -196338635 + MIR SINE MIR 8 78 -184 188 219 0 0 chr4 5989831 5989863 -196338484 - MER5A DNA MER1_type -1 188 157 235 265 92 0 chr4 5989874 5989947 -196338400 - MIR SINE MIR -76 132 51 1586 132 156 93 chr4 5989989 5990367 -196337980 - MER4A LTR ERV1 0 664 263 485 104 42 21 chr4 5990369 5990465 -196337882 - MER4A LTR ERV1 -566 98 1 2359 98 3 0 chr4 5990793 5991100 -196337247 - AluSq SINE Alu -5 308 1 281 312 127 26 chr4 5991298 5991487 -196336860 + MIR SINE MIR 43 250 -12 1862 189 78 71 chr4 5991588 5992154 -196336193 - LTR59 LTR ERV1 -11 586 17 518 198 35 9 chr4 5992164 5992280 -196336067 - L1PA3 LINE L1 -10 6145 6027 376 283 147 22 chr4 5992578 5992762 -196335585 + L1MC4 LINE L1 7525 7731 -311 1854 119 101 0 chr4 5992795 5993072 -196335275 - AluSx SINE Alu -7 305 1 2096 191 87 17 chr4 5993117 5993599 -196334748 - MER34 LTR ERV1 -15 527 12 241 258 155 7 chr4 5993724 5993879 -196334468 + L1MC5 LINE L1 7703 7880 -81 608 299 83 24 chr4 5994020 5994431 -196333916 + L1ME4a LINE L1 5563 5997 -124 3528 73 54 0 chr4 5994459 5994937 -196333410 + L1PA8 LINE L1 5668 6171 -1 344 246 35 18 chr4 5995076 5995190 -196333157 - L1ME1 LINE L1 -5 6161 6046 1248 180 3 52 chr4 5995215 5995504 -196332843 - L1MC3 LINE L1 -2 7783 7509 191 224 24 118 chr4 5995916 5996001 -196332346 + L2 LINE L2 2697 2773 -541 596 219 12 21 chr4 5996289 5996709 -196331638 + (TCCA)n Simple_repeat Simple_repeat 1 416 0 345 378 31 0 chr4 5996711 5996838 -196331509 - L2 LINE L2 -4 3268 3138 969 223 175 41 chr4 5997709 5998103 -196330244 - MLT1C LTR MaLR 0 467 21 2339 113 0 0 chr4 5998302 5998604 -196329743 - AluSx SINE Alu -10 302 1 632 220 124 6 chr4 5998668 5998845 -196329502 + MER58C DNA MER1_type 1 198 -17 447 320 51 6 chr4 5999188 5999363 -196328984 - MIR SINE MIR 0 262 80 1407 140 62 135 chr4 5999997 6000368 -196327979 + MER2 DNA MER2_type 1 344 0 471 331 12 17 chr4 6000536 6000708 -196327639 + MIR SINE MIR 92 262 0 208 308 84 35 chr4 6000760 6000903 -196327444 - MIR3 SINE MIR -57 151 2 1978 117 0 0 chr4 6001398 6001681 -196326666 + AluSx SINE Alu 25 307 -5 349 303 80 17 chr4 6001685 6001860 -196326487 + Charlie8 DNA MER1_type 89 274 -2143 212 246 18 18 chr4 6001942 6001999 -196326348 + MIR3 SINE MIR 104 160 -48 227 289 78 39 chr4 6003162 6003290 -196325057 + MIR SINE MIR 13 145 -117 2195 205 152 5 chr4 6003291 6003858 -196324489 - MLT1E1 LTR MaLR -1 653 4 366 252 30 15 chr4 6004332 6004463 -196323884 + (TG)n Simple_repeat Simple_repeat 2 134 0 285 289 35 35 chr4 6004493 6004635 -196323712 + (CATG)n Simple_repeat Simple_repeat 1 142 0 642 326 52 17 chr4 6005077 6005310 -196323037 + MIR SINE MIR 11 251 -11 817 169 84 0 chr4 6005331 6005473 -196322874 + AluJb SINE Alu 137 290 -22 233 263 10 30 chr4 6005473 6005572 -196322775 + (TATG)n Simple_repeat Simple_repeat 4 100 0 490 242 253 10 chr4 6007276 6007474 -196320873 + MIR SINE MIR 17 262 0 1420 182 162 17 chr4 6008184 6008530 -196319817 - MSTD LTR MaLR 0 396 1 2022 150 80 102 chr4 6009598 6010077 -196318270 - MLT2B2 LTR ERVL 0 515 48 2207 87 3 13 chr4 6010077 6010388 -196317959 + AluSg1 SINE Alu 1 308 -1 2022 150 80 102 chr4 6010388 6010435 -196317912 - MLT2B2 LTR ERVL -467 48 1 246 282 71 24 chr4 6010981 6011066 -196317281 - L2 LINE L2 0 3272 3184 348 302 16 16 chr4 6011089 6011218 -196317129 + MER117 DNA MER1_type 27 155 -42 348 278 72 0 chr4 6011260 6011357 -196316990 - MIR SINE MIR -8 254 151 375 23 0 0 chr4 6011362 6011406 -196316941 + (TG)n Simple_repeat Simple_repeat 1 44 0 485 213 148 0 chr4 6012173 6012281 -196316066 + L2 LINE L2 3190 3313 0 279 355 35 18 chr4 6012499 6012668 -196315679 + L2 LINE L2 2898 3069 -203 985 242 7 28 chr4 6012749 6013002 -196315345 - MIR SINE MIR 0 262 12 1838 162 0 0 chr4 6013071 6013380 -196314967 + AluSx SINE Alu 1 309 -3 976 159 0 16 chr4 6013400 6013582 -196314765 + AluSg/x SINE Alu 129 307 -5 1719 236 77 19 chr4 6014200 6014679 -196313668 - LTR53 LTR ERVL -12 507 1 709 83 21 0 chr4 6014849 6014945 -196313402 - AluJo SINE Alu -176 136 39 321 269 0 0 chr4 6015254 6015321 -196313026 + MIR SINE MIR 86 152 -110 2152 181 55 22 chr4 6017063 6017515 -196310832 - MLT1C LTR MaLR 0 467 1 190 361 46 0 chr4 6018288 6018418 -196309929 + L2 LINE L2 2801 2936 -378 240 276 168 22 chr4 6018418 6018603 -196309744 + LTR16A1 LTR ERVL 1 212 -245 826 208 34 5 chr4 6018745 6018952 -196309395 + LTR16A1 LTR ERVL 245 457 0 419 261 125 33 chr4 6018999 6019183 -196309164 + L2 LINE L2 3006 3206 -107 288 204 159 21 chr4 6019346 6019491 -196308856 - MIR SINE MIR -57 205 38 21 36 0 0 chr4 6019679 6019707 -196308640 + AT_rich Low_complexity Low_complexity 1 28 0 540 201 37 0 chr4 6020526 6020645 -196307702 + MER63 DNA MER1_type 679 1653 -35 2126 115 3 6 chr4 6021702 6022015 -196306332 - AluSx SINE Alu 0 312 1 181 167 0 48 chr4 6022163 6022205 -196306142 + L2 LINE L2 3014 3053 -219 370 312 64 57 chr4 6022274 6022572 -196305775 - L2 LINE L2 -1 3312 3013 2507 62 0 0 chr4 6023761 6024070 -196304277 - AluY SINE Alu -2 309 1 207 335 81 25 chr4 6024077 6024238 -196304109 + L2 LINE L2 2549 2718 -596 3730 136 62 0 chr4 6024355 6024953 -196303394 - LTR24C LTR ERV1 0 635 1 198 103 0 0 chr4 6025899 6025928 -196302419 + (A)n Simple_repeat Simple_repeat 1 29 0 286 285 8 39 chr4 6026409 6026539 -196301808 + (TATATG)n Simple_repeat Simple_repeat 1 126 0 406 279 66 0 chr4 6026559 6026681 -196301666 - MIR SINE MIR -48 214 85 376 265 15 45 chr4 6026743 6026875 -196301472 - MIR SINE MIR -74 188 61 185 270 0 81 chr4 6027011 6027085 -196301262 + MIR SINE MIR 115 182 -80 2301 151 27 117 chr4 6027438 6027883 -196300464 - MLT2B2 LTR ERVL -2 513 128 1858 135 10 7 chr4 6027883 6028179 -196300168 + AluSx SINE Alu 6 302 -10 2301 151 27 117 chr4 6028179 6028297 -196300050 - MLT2B2 LTR ERVL -387 128 1 228 245 19 47 chr4 6028733 6028839 -196299508 + CT-rich Low_complexity Low_complexity 4 106 0 661 223 7 7 chr4 6029740 6029879 -196298468 + MIR SINE MIR 35 173 -89 1057 269 56 6 chr4 6029971 6030313 -196298034 - L1MEc LINE L1 -5453 943 585 308 205 103 13 chr4 6030327 6030405 -196297942 - L1M4 LINE L1 -3317 2829 2745 352 95 16 16 chr4 6031139 6031202 -196297145 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 311 133 22 0 chr4 6031202 6031247 -196297100 - Tigger2 DNA MER2_type -14 2704 2659 308 299 35 75 chr4 6031250 6031424 -196296923 + L1MEc LINE L1 266 432 -5964 2266 109 48 24 chr4 6031442 6031817 -196296530 - Tigger2 DNA MER2_type -54 2664 2281 2375 144 31 2 chr4 6031823 6032239 -196296108 - L1MA4A LINE L1 -6 6297 5870 399 183 0 14 chr4 6032249 6032320 -196296027 + MER8 DNA MER2_type 170 239 0 450 316 58 0 chr4 6032361 6032535 -196295812 - L1MC4a LINE L1 -1947 5861 5678 497 275 6 2 chr4 6032561 6032702 -196295645 - MIR SINE MIR -43 165 22 225 316 51 0 chr4 6033395 6033493 -196294854 + L2 LINE L2 2737 2839 -475 737 232 29 77 chr4 6033604 6033953 -196294394 - HAL1 LINE L1 0 2507 2176 1944 156 97 33 chr4 6034103 6034495 -196293852 - LTR59 LTR ERV1 -172 425 9 43506 35 23 1 chr4 6034497 6040510 -196287837 - L1PA3 LINE L1 -10 6145 1 303 28 0 0 chr4 6040575 6040611 -196287736 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 769 282 45 48 chr4 6040633 6040988 -196287359 - L2 LINE L2 -383 2931 2578 221 316 74 0 chr4 6041055 6041150 -196287197 + MIR SINE MIR 150 251 -11 2123 115 3 0 chr4 6041156 6041452 -196286895 + AluSx SINE Alu 1 297 -15 2616 113 6 6 chr4 6041644 6042008 -196286339 - THE1B LTR MaLR 0 364 1 1666 259 58 25 chr4 6042499 6043029 -196285318 - MER77 LTR ERV1 -4 601 54 2020 118 3 7 chr4 6043309 6043613 -196284734 + AluSx SINE Alu 1 303 -9 2626 170 41 12 chr4 6043663 6044152 -196284195 - MLT1D LTR MaLR -1 504 2 203 0 0 36 chr4 6044458 6044486 -196283861 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 2097 75 18 0 chr4 6044493 6044773 -196283574 - AluY SINE Alu -26 285 1 238 314 17 25 chr4 6044908 6045026 -196283321 + MIR3 SINE MIR 4 120 -88 525 285 90 70 chr4 6045409 6045721 -196282626 + L2 LINE L2 2955 3272 0 498 289 119 50 chr4 6045816 6046175 -196282172 - MLT1H LTR MaLR -16 533 40 221 154 0 26 chr4 6046769 6046808 -196281539 + CT-rich Low_complexity Low_complexity 2 39 0 381 270 108 14 chr4 6046964 6047112 -196281235 - MIR SINE MIR -1 261 100 335 299 92 49 chr4 6047814 6047998 -196280349 - L1ME3A LINE L1 -8 6145 5954 1290 217 72 6 chr4 6048073 6048405 -196279942 - L1ME3A LINE L1 -221 5932 5579 497 212 20 34 chr4 6048421 6048567 -196279780 - L1ME3A LINE L1 -1545 4584 4441 * 641 217 41 52 chr4 6048555 6048916 -196279431 - L1ME3A LINE L1 -2088 4041 2315 237 65 0 0 chr4 6048950 6048981 -196279366 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 243 77 0 231 chr4 6049040 6049118 -196279229 + MIR SINE MIR 79 138 -124 848 279 35 80 chr4 6049118 6049835 -196278512 - L1ME3A LINE L1 -4905 1214 530 12982 24 0 1 chr4 6050416 6052768 -196275579 - L1PA3 LINE L1 -2 6153 3803 350 47 0 4 chr4 6052768 6052825 -196275522 + L1PA3 LINE L1 3753 3808 -2338 405 290 147 39 chr4 6052928 6053159 -196275188 + MIR SINE MIR 5 260 -2 195 268 37 49 chr4 6053133 6053215 -196275132 - L2 LINE L2 -4 3268 3188 * 1888 189 40 5 chr4 6053313 6053693 -196274654 - MER68 LTR ERV1 -4 558 166 1758 166 35 10 chr4 6054131 6054421 -196273926 + AluJb SINE Alu 1 297 -15 2195 126 13 3 chr4 6054642 6054951 -196273396 - AluSx SINE Alu 0 312 1 1115 31 15 0 chr4 6054966 6055096 -196273251 - AluY SINE Alu -6 305 174 279 0 0 0 chr4 6055113 6055144 -196273203 + (A)n Simple_repeat Simple_repeat 1 31 0 269 214 0 11 chr4 6055653 6055742 -196272605 + (TG)n Simple_repeat Simple_repeat 1 88 0 264 279 0 0 chr4 6055800 6055911 -196272436 + (TG)n Simple_repeat Simple_repeat 1 111 0 202 320 13 0 chr4 6055922 6055997 -196272350 + (TG)n Simple_repeat Simple_repeat 1 76 0 255 284 77 27 chr4 6056492 6056675 -196271672 + HAL1 LINE L1 2226 2417 -90 1689 202 152 5 chr4 6056735 6057170 -196271177 + MLT1D LTR MaLR 7 505 0 2276 99 13 7 chr4 6057181 6057483 -196270864 - AluSx SINE Alu -8 304 1 251 320 74 16 chr4 6058212 6058334 -196270013 + L2 LINE L2 3136 3264 -8 255 282 103 43 chr4 6058431 6058548 -196269799 + MER5B DNA MER1_type 54 177 -1 2594 57 3 0 chr4 6059167 6059466 -196268881 + AluY SINE Alu 1 300 -11 1840 192 93 25 chr4 6059796 6060269 -196268078 + MLT1D LTR MaLR 1 505 0 282 279 15 0 chr4 6060316 6060384 -196267963 + MIR SINE MIR 7 75 -187 740 254 121 4 chr4 6060468 6060708 -196267639 + L2 LINE L2 1933 2200 -1114 1149 230 7 35 chr4 6060715 6060998 -196267349 - MLT1E LTR MaLR 0 593 319 946 263 207 0 chr4 6060998 6061390 -196266957 + L2 LINE L2 2235 2707 -607 956 140 92 0 chr4 6061410 6061574 -196266773 - MER30 DNA MER1_type -51 179 1 392 270 162 7 chr4 6061586 6061734 -196266613 + MER104 DNA Tc2 1 171 -9 470 262 92 19 chr4 6061738 6062049 -196266298 + L2 LINE L2 2704 3102 -211 2167 139 0 0 chr4 6062474 6062776 -196265571 + AluSx SINE Alu 1 302 -10 248 242 21 84 chr4 6063159 6063254 -196265093 + MIR SINE MIR 8 96 -166 357 233 69 80 chr4 6063313 6063386 -196264961 + L1MEd LINE L1 859 931 -5188 2186 99 13 20 chr4 6063386 6063688 -196264659 + AluSx SINE Alu 1 300 -12 357 233 69 80 chr4 6063688 6063876 -196264471 + L1MEd LINE L1 931 1117 -5002 756 236 51 25 chr4 6064202 6064439 -196263908 + MER90 LTR ERV1 1 243 -332 277 247 74 0 chr4 6064501 6064582 -196263765 + MER90 LTR ERV1 528 614 0 337 283 91 11 chr4 6064820 6065007 -196263340 + L1MEd LINE L1 2196 2397 -3732 255 280 53 33 chr4 6065022 6065172 -196263175 + L1MEd LINE L1 2452 2604 -3525 630 306 73 48 chr4 6065216 6066116 -196262231 + L1M4 LINE L1 4202 5132 -1014 336 221 52 0 chr4 6066407 6066484 -196261863 + MIR SINE MIR 95 175 -87 502 162 110 7 chr4 6066498 6066634 -196261713 - L1MB7 LINE L1 0 6184 6035 375 253 0 57 chr4 6067048 6067161 -196261186 - L1MC4 LINE L1 -1334 6988 1977 188 210 12 0 chr4 6067163 6067244 -196261103 + (TA)n Simple_repeat Simple_repeat 1 82 0 2196 128 0 13 chr4 6067244 6067548 -196260799 - AluSx SINE Alu -12 300 1 3091 117 42 16 chr4 6067581 6068087 -196260260 - L1PA16 LINE L1 -2 6164 5646 2170 131 3 3 chr4 6068207 6068513 -196259834 + AluSx SINE Alu 1 306 -6 226 269 29 39 chr4 6068552 6068656 -196259691 - L1PBa LINE L1 -3902 2961 2859 531 307 84 14 chr4 6068671 6069182 -196259165 - L1MC4 LINE L1 -4913 1503 1012 1613 195 48 11 chr4 6070188 6070563 -196257784 - MLT1B LTR MaLR -1 389 1 303 299 0 0 chr4 6070747 6070824 -196257523 - MIR SINE MIR -178 84 8 327 268 164 18 chr4 6071021 6071214 -196257133 + MIR SINE MIR 33 250 -12 218 343 20 10 chr4 6071687 6071786 -196256561 + MIR SINE MIR 45 144 -118 261 250 47 0 chr4 6071917 6071981 -196256366 - MIR SINE MIR -109 99 33 2359 109 3 0 chr4 6072897 6073208 -196255139 + AluSx SINE Alu 1 312 0 227 299 0 15 chr4 6074107 6074174 -196254173 - MLT1J LTR MaLR -202 309 244 2200 112 27 3 chr4 6074230 6074526 -196253821 + AluSx SINE Alu 1 303 -9 235 252 216 18 chr4 6074534 6074645 -196253702 - MLT1L LTR MaLR -355 260 128 3467 121 17 6 chr4 6075214 6075735 -196252612 - MER1A DNA MER1_type 0 527 1 196 277 31 0 chr4 6076307 6076372 -196251975 + MIR3 SINE MIR 88 154 -54 342 190 0 0 chr4 6076708 6076766 -196251581 + MER94 DNA DNA 54 111 -23 2262 109 10 0 chr4 6076777 6077071 -196251276 - AluSx SINE Alu -15 297 1 369 286 27 0 chr4 6077972 6078084 -196250263 - LTR16C LTR ERVL -2 489 375 287 281 86 29 chr4 6078122 6078261 -196250086 - MLT1E2 LTR MaLR -37 589 443 308 291 34 56 chr4 6078358 6078537 -196249810 - MER5A DNA MER1_type -5 184 10 4580 137 27 23 chr4 6078725 6078918 -196249429 - L1PB4 LINE L1 0 6156 5965 2397 82 7 7 chr4 6078918 6079212 -196249135 - AluSx SINE Alu -18 294 1 4580 137 27 23 chr4 6079212 6079841 -196248506 - L1PB4 LINE L1 -191 5965 5331 302 284 90 26 chr4 6079919 6080074 -196248273 + L2 LINE L2 3149 3313 0 229 191 0 0 chr4 6080074 6080121 -196248226 + GA-rich Low_complexity Low_complexity 2 48 0 392 143 12 0 chr4 6080946 6081030 -196247317 + CT-rich Low_complexity Low_complexity 2 86 0 358 250 176 0 chr4 6081809 6081957 -196246390 - MIR SINE MIR -13 249 76 180 246 146 18 chr4 6082006 6082116 -196246231 + MIR SINE MIR 23 146 -62 491 279 19 13 chr4 6082487 6082645 -196245702 + MIR3 SINE MIR 44 202 -6 185 206 0 0 chr4 6082683 6082717 -196245630 + MIR SINE MIR 116 149 -113 398 286 8 15 chr4 6082892 6083025 -196245322 + MIR3 SINE MIR 12 143 -65 618 264 56 0 chr4 6085500 6085678 -196242669 - MER20 DNA MER1_type -1 218 31 1893 92 7 33 chr4 6086065 6086336 -196242011 - AluSg SINE Alu -46 264 1 690 258 154 27 chr4 6087805 6088104 -196240243 - MER69 DNA AcHobo -2184 342 6 991 208 59 24 chr4 6088104 6088359 -196239988 - LTR48B LTR ERV1 0 644 381 351 314 33 8 chr4 6088853 6088974 -196239373 - MER5A DNA MER1_type -3 186 63 593 290 67 37 chr4 6089099 6089399 -196238948 + LTR16B LTR ERVL 1 309 -155 411 163 8 39 chr4 6089400 6089529 -196238818 + CT-rich Low_complexity Low_complexity 1 125 0 399 234 47 58 chr4 6089532 6089703 -196238644 + LTR16B LTR ERVL 292 460 -4 1998 111 71 31 chr4 6090818 6091168 -196237179 + THE1B LTR MaLR 1 364 0 2462 134 7 34 chr4 6091287 6091697 -196236650 + MSTC LTR MaLR 30 428 0 604 274 50 5 chr4 6091833 6092034 -196236313 + L1M4 LINE L1 4848 5057 -1089 397 171 9 117 chr4 6092038 6092149 -196236198 + MLT1D LTR MaLR 1 99 -406 658 190 23 81 chr4 6092833 6093007 -196235340 + MIR SINE MIR 8 171 -91 423 226 0 0 chr4 6093073 6093175 -196235172 + (CACCAT)n Simple_repeat Simple_repeat 4 105 0 506 324 67 17 chr4 6094962 6095200 -196233147 - MIR SINE MIR -10 252 3 225 315 0 0 chr4 6095219 6095273 -196233074 + (TG)n Simple_repeat Simple_repeat 1 54 0 2049 160 102 19 chr4 6095510 6095922 -196232425 + MER83 LTR ERV1 3 448 0 392 301 77 32 chr4 6095925 6096081 -196232266 + MIR3 SINE MIR 42 204 -4 2114 151 83 2 chr4 6096288 6096685 -196231662 + MSTB1 LTR MaLR 4 432 0 220 200 0 0 chr4 6097313 6097353 -196230994 + CT-rich Low_complexity Low_complexity 2 41 0 583 275 63 5 chr4 6097378 6097567 -196230780 + MER58C DNA MER1_type 1 200 -15 210 246 105 44 chr4 6097802 6097916 -196230431 + MIR SINE MIR 102 222 -40 338 231 13 13 chr4 6098606 6098762 -196229585 + (CA)n Simple_repeat Simple_repeat 1 156 0 231 259 0 0 chr4 6098893 6098978 -196229369 + (CA)n Simple_repeat Simple_repeat 2 86 0 306 308 45 8 chr4 6099099 6099232 -196229115 - LTR16C LTR ERVL -2 489 352 435 244 6 11 chr4 6100408 6100584 -196227763 + (CA)n Simple_repeat Simple_repeat 1 175 0 343 258 78 18 chr4 6101567 6101734 -196226613 - L1ME4a LINE L1 -240 5881 5705 236 333 53 0 chr4 6101858 6101972 -196226375 - L1ME4a LINE L1 -458 5663 5544 1201 131 0 0 chr4 6102072 6102240 -196226107 + AluSg/x SINE Alu 137 304 -8 351 332 123 25 chr4 6102478 6102713 -196225634 - L1MC4a LINE L1 -1903 5905 5648 385 299 108 46 chr4 6102725 6103050 -196225297 - L1MC4a LINE L1 -2187 5621 5277 449 305 100 59 chr4 6103074 6103618 -196224729 - L1MC4a LINE L1 -893 5253 4673 1796 153 50 10 chr4 6103776 6104076 -196224271 - AluJo SINE Alu 0 312 1 2022 162 45 8 chr4 6104763 6105164 -196223183 + L1MB7 LINE L1 5752 6167 -17 1525 238 65 25 chr4 6105627 6105989 -196222358 + MLT1C LTR MaLR 1 386 -81 2878 13 0 0 chr4 6105989 6106295 -196222052 - AluYa5 SINE Alu -5 306 1 1525 238 65 25 chr4 6106295 6106381 -196221966 + MLT1C LTR MaLR 386 467 0 313 269 92 17 chr4 6106386 6106505 -196221842 + MIR SINE MIR 108 235 -27 2455 57 3 10 chr4 6106592 6106888 -196221459 + AluY SINE Alu 1 294 -17 1910 198 20 15 chr4 6107051 6107445 -196220902 + MSTD LTR MaLR 1 396 0 254 125 21 0 chr4 6108502 6108550 -196219797 + GA-rich Low_complexity Low_complexity 2 50 0 2025 117 25 18 chr4 6110177 6110531 -196217816 + AluSq SINE Alu 1 356 0 627 304 99 24 chr4 6110658 6111384 -196216963 - L2 LINE L2 0 3313 2539 465 257 71 0 chr4 6111403 6111543 -196216804 - L2 LINE L2 -896 2418 2269 269 327 10 0 chr4 6111605 6111706 -196216641 + L2 LINE L2 2947 3048 -224 1024 229 138 14 chr4 6112844 6113193 -196215154 - LTR16C LTR ERVL -2 489 98 784 242 37 0 chr4 6113330 6113520 -196214827 + MER3 DNA MER1_type 1 197 -12 247 214 0 18 chr4 6113576 6113632 -196214715 + MIR SINE MIR 96 150 -112 737 228 85 5 chr4 6113713 6113924 -196214423 + MER33 DNA MER1_type 1 228 -96 274 310 52 0 chr4 6114460 6114576 -196213771 - MER5C DNA MER1_type -202 122 1 2019 132 23 23 chr4 6114728 6114847 -196213500 + AluSx SINE Alu 1 119 -193 2033 72 4 0 chr4 6114847 6115096 -196213251 + AluY SINE Alu 61 310 -1 2019 132 23 23 chr4 6115096 6115286 -196213061 + AluSx SINE Alu 118 310 -2 537 161 0 0 chr4 6115400 6115530 -196212817 + (CA)n Simple_repeat Simple_repeat 1 130 0 298 238 114 0 chr4 6116019 6116124 -196212223 - MIR3 SINE MIR -10 198 82 455 333 18 23 chr4 6116445 6116616 -196211731 + MIR SINE MIR 81 250 -12 28 29 0 0 chr4 6116778 6116813 -196211534 + AT_rich Low_complexity Low_complexity 1 35 0 305 287 29 7 chr4 6117378 6117514 -196210833 + HAL1 LINE L1 102 240 -2267 1003 301 29 26 chr4 6117584 6117969 -196210378 + L1ME3A LINE L1 5564 5949 -221 1272 257 111 36 chr4 6117971 6118523 -196209824 + MLT1E LTR MaLR 1 593 0 2111 137 0 10 chr4 6118829 6119129 -196209218 + AluSx SINE Alu 1 297 -15 272 320 62 0 chr4 6119242 6119370 -196208977 + MLT1E-int LTR MaLR 718 853 -518 1957 116 6 75 chr4 6119412 6119730 -196208617 - AluSx SINE Alu -16 296 1 803 297 81 48 chr4 6119837 6120234 -196208113 + MLT1E-int LTR MaLR 961 1370 -1 450 292 0 8 chr4 6120235 6120355 -196207992 + MLT1E LTR MaLR 3 121 -472 481 299 119 0 chr4 6120526 6120703 -196207644 + MIR SINE MIR 31 228 -34 1328 134 26 148 chr4 6120963 6121307 -196207040 - AluYb8 SINE Alu -5 303 2 235 272 142 40 chr4 6121405 6121439 -196206908 - MIR SINE MIR -28 234 205 1159 184 76 65 chr4 6121439 6121809 -196206538 - MLT1A2 LTR MaLR 0 374 1 235 272 142 40 chr4 6121809 6121965 -196206382 - MIR SINE MIR -57 205 20 247 273 220 8 chr4 6123400 6123532 -196204815 - MIR SINE MIR -34 228 69 269 366 99 12 chr4 6123839 6124000 -196204347 - MER5B DNA MER1_type -1 177 3 975 154 7 0 chr4 6124532 6124837 -196203510 + GA-rich Low_complexity Low_complexity 1 307 0 321 261 126 18 chr4 6125032 6125143 -196203204 + MIR3 SINE MIR 39 161 -47 240 283 0 0 chr4 6125281 6125334 -196203013 + polypyrimidine Low_complexity Low_complexity 3 55 0 381 232 12 0 chr4 6125339 6125421 -196202926 - L2 LINE L2 0 3272 3190 2001 127 32 0 chr4 6125950 6126234 -196202113 + AluSx SINE Alu 5 297 -15 2396 192 24 10 chr4 6126246 6126745 -196201602 + L1MA8 LINE L1 5485 5990 -301 1460 147 65 47 chr4 6127071 6127350 -196200997 - AluJb SINE Alu -18 294 11 874 282 112 15 chr4 6127405 6127922 -196200425 + L1ME4a LINE L1 5313 5891 -230 390 323 117 33 chr4 6128375 6128709 -196199638 - L2 LINE L2 -84 3188 2827 392 235 9 0 chr4 6129181 6129296 -196199051 + (CACCAT)n Simple_repeat Simple_repeat 4 119 0 62 0 0 0 chr4 6130867 6130929 -196197418 + AT_rich Low_complexity Low_complexity 1 62 0 2177 60 4 19 chr4 6130936 6131204 -196197143 + AluY SINE Alu 1 264 -47 422 282 81 0 chr4 6131221 6131345 -196197002 + AluJb SINE Alu 164 297 -5 240 35 0 0 chr4 6133114 6133143 -196195204 + (TG)n Simple_repeat Simple_repeat 1 29 0 694 229 7 76 chr4 6133157 6133432 -196194915 - AluSp SINE Alu -31 282 27 206 288 34 0 chr4 6135038 6135097 -196193250 + MIR SINE MIR 129 189 -73 2453 211 60 11 chr4 6136083 6136180 -196192167 - L1 LINE L1 -2472 3674 3583 2291 107 0 0 chr4 6136180 6136469 -196191878 + AluSg SINE Alu 1 289 -21 2453 211 60 11 chr4 6136469 6137040 -196191307 - L1 LINE L1 -2563 3583 2973 5023 64 11 33 chr4 6137385 6138091 -196190256 + LTR8 LTR ERV1 1 691 0 300 305 17 17 chr4 6138171 6138289 -196190058 - MER5B DNA MER1_type -58 120 3 538 208 12 17 chr4 6139725 6139898 -196188449 + (CCA)n Simple_repeat Simple_repeat 2 173 0 * 669 189 11 11 chr4 6139855 6140035 -196188312 + (CAT)n Simple_repeat Simple_repeat 1 180 0 308 162 0 15 chr4 6140084 6140152 -196188195 + (CAT)n Simple_repeat Simple_repeat 1 67 0 689 295 59 8 chr4 6140152 6140389 -196187958 - MIR SINE MIR -1 261 13 203 410 8 22 chr4 6140410 6140544 -196187803 - L3b LINE CR1 -8 1575 1444 * 540 296 224 31 chr4 6140534 6141646 -196186701 + L2 LINE L2 1729 3053 -219 192 278 37 0 chr4 6141786 6141840 -196186507 + L2 LINE L2 3212 3267 -5 215 293 69 26 chr4 6141937 6142053 -196186294 - MIR SINE MIR -68 140 20 414 293 43 27 chr4 6142113 6142301 -196186046 - MIR SINE MIR -44 218 28 240 200 20 0 chr4 6142797 6142847 -196185500 + MLT1J2 LTR MaLR 92 142 -308 334 198 128 0 chr4 6143131 6143217 -196185130 + MIR SINE MIR 70 166 -96 30 27 0 0 chr4 6143394 6143431 -196184916 + AT_rich Low_complexity Low_complexity 1 37 0 476 282 116 33 chr4 6143908 6144149 -196184198 - L2 LINE L2 -1 3271 3011 1571 156 15 30 chr4 6145439 6145708 -196182639 - AluJo SINE Alu -13 299 35 216 97 0 0 chr4 6145729 6145760 -196182587 + (T)n Simple_repeat Simple_repeat 1 31 0 433 313 65 18 chr4 6145859 6146076 -196182271 - MIR SINE MIR -34 228 2 354 317 36 28 chr4 6147288 6147537 -196180810 - L2 LINE L2 -188 3084 2834 2304 78 3 10 chr4 6147969 6148265 -196180082 + AluSc SINE Alu 1 294 -15 481 299 119 0 chr4 6148525 6148702 -196179645 - MIR SINE MIR -34 228 31 450 292 0 8 chr4 6148873 6148993 -196179354 - MLT1E LTR MaLR -472 121 3 803 297 81 48 chr4 6148994 6149391 -196178956 - MLT1E-int LTR MaLR -1 1370 961 2026 107 6 75 chr4 6149498 6149816 -196178531 + AluSx SINE Alu 1 296 -16 272 320 62 0 chr4 6149858 6149986 -196178361 - MLT1E-int LTR MaLR -518 853 718 241 172 0 52 chr4 6150099 6150157 -196178190 - Alu SINE Alu -5 295 241 693 201 6 11 chr4 6150389 6150568 -196177779 + (CCA)n Simple_repeat Simple_repeat 1 178 0 313 189 0 45 chr4 6150563 6150674 -196177673 + (CACCAT)n Simple_repeat Simple_repeat 1 106 0 * 713 183 11 11 chr4 6150674 6150854 -196177493 + (CCA)n Simple_repeat Simple_repeat 1 180 0 432 218 6 26 chr4 6150858 6151014 -196177333 + (CACCAT)n Simple_repeat Simple_repeat 4 156 0 308 162 0 15 chr4 6151063 6151131 -196177216 + (CAT)n Simple_repeat Simple_repeat 1 67 0 689 295 59 8 chr4 6151131 6151368 -196176979 - MIR SINE MIR -1 261 13 203 410 8 22 chr4 6151389 6151523 -196176824 - L3b LINE CR1 -8 1575 1444 * 540 296 224 31 chr4 6151513 6152625 -196175722 + L2 LINE L2 1729 3053 -219 192 278 37 0 chr4 6152765 6152819 -196175528 + L2 LINE L2 3212 3267 -5 215 293 69 26 chr4 6152916 6153032 -196175315 - MIR SINE MIR -68 140 20 414 293 43 27 chr4 6153092 6153280 -196175067 - MIR SINE MIR -44 218 28 240 200 20 0 chr4 6153776 6153826 -196174521 + MLT1J2 LTR MaLR 92 142 -308 334 198 128 0 chr4 6154110 6154196 -196174151 + MIR SINE MIR 70 166 -96 30 27 0 0 chr4 6154373 6154410 -196173937 + AT_rich Low_complexity Low_complexity 1 37 0 476 282 116 33 chr4 6154887 6155128 -196173219 - L2 LINE L2 -1 3271 3011 1571 156 15 30 chr4 6156418 6156687 -196171660 - AluJo SINE Alu -13 299 35 216 97 0 0 chr4 6156708 6156739 -196171608 + (T)n Simple_repeat Simple_repeat 1 31 0 433 313 65 18 chr4 6156838 6157055 -196171292 - MIR SINE MIR -34 228 2 427 293 36 28 chr4 6158267 6158516 -196169831 - L2 LINE L2 -188 3084 2834 2375 80 3 7 chr4 6158948 6159249 -196169098 + AluSc SINE Alu 1 300 -9 1260 163 38 129 chr4 6159277 6159705 -196168642 + MLT1B LTR MaLR 2 374 0 475 269 54 81 chr4 6160425 6160648 -196167699 - L1MC5 LINE L1 -30 7931 7715 303 140 40 0 chr4 6160679 6160729 -196167618 + MER75 DNA T2_type 453 504 0 303 313 42 50 chr4 6160729 6160988 -196167359 - L1MC5 LINE L1 -253 7708 7452 189 0 0 0 chr4 6161516 6161537 -196166810 + (CA)n Simple_repeat Simple_repeat 2 22 0 432 37 0 0 chr4 6161862 6161916 -196166431 + (TA)n Simple_repeat Simple_repeat 1 54 0 2441 86 0 0 chr4 6161917 6162209 -196166138 - AluY SINE Alu -19 292 1 520 355 4 18 chr4 6162224 6162497 -196165850 - L1ME LINE L1 -301 5820 5552 1922 179 0 3 chr4 6162548 6162856 -196165491 - AluJo SINE Alu 0 312 6 217 214 62 107 chr4 6162930 6163009 -196165338 - L2 LINE L2 -60 3212 3138 2479 77 6 6 chr4 6163009 6163320 -196165027 + AluY SINE Alu 1 311 0 217 214 62 107 chr4 6163320 6163352 -196164995 - L2 LINE L2 -134 3138 3106 310 354 79 0 chr4 6163367 6163531 -196164816 - LTR16C LTR ERVL -26 465 289 213 261 99 49 chr4 6163638 6163780 -196164567 + L2 LINE L2 2701 2849 -465 390 227 0 11 chr4 6164085 6164173 -196164174 + L2 LINE L2 3186 3272 -41 2312 83 0 35 chr4 6164987 6165301 -196163046 + AluY SINE Alu 1 303 -8 252 333 34 0 chr4 6165304 6165421 -196162926 + MER103 DNA DNA 31 151 -15 184 239 130 33 chr4 6165560 6165652 -196162695 - MIR SINE MIR -78 130 30 22 0 0 0 chr4 6165893 6165915 -196162432 + AT_rich Low_complexity Low_complexity 1 22 0 2469 72 0 0 chr4 6166013 6166304 -196162043 + AluSx SINE Alu 1 291 -21 271 252 216 18 chr4 6166462 6166573 -196161774 + MIR SINE MIR 18 150 -112 266 320 105 63 chr4 6166706 6166942 -196161405 - L2 LINE L2 -75 3197 2941 2312 109 87 32 chr4 6166942 6167346 -196161001 - MSTA LTR MaLR 0 428 3 266 320 105 63 chr4 6167346 6167443 -196160904 - L2 LINE L2 -331 2941 2850 442 283 25 6 chr4 6167668 6167827 -196160520 + L1ME LINE L1 5566 5727 -394 437 290 24 12 chr4 6168238 6168407 -196159940 + GA-rich Low_complexity Low_complexity 5 175 0 191 283 9 88 chr4 6169160 6169273 -196159074 - L2 LINE L2 -237 3035 2932 2492 74 0 3 chr4 6169479 6169775 -196158572 + AluY SINE Alu 1 295 -16 353 232 181 36 chr4 6171640 6171827 -196156520 - MIR SINE MIR -11 251 34 199 189 0 0 chr4 6171900 6171937 -196156410 + MIR SINE MIR 112 148 -114 301 265 225 0 chr4 6172259 6172410 -196155937 + MIR SINE MIR 40 224 -38 281 308 0 33 chr4 6172633 6172724 -196155623 + L2 LINE L2 2673 2760 -554 426 278 49 0 chr4 6173106 6173250 -196155097 + MIR SINE MIR 73 223 -39 244 231 0 0 chr4 6173464 6173516 -196154831 + A-rich Low_complexity Low_complexity 4 55 0 542 286 164 8 chr4 6173531 6173793 -196154554 + L3 LINE CR1 1163 1465 -112 340 333 84 37 chr4 6175785 6176058 -196152289 + MLT1I LTR MaLR 98 383 -26 673 257 53 57 chr4 6176087 6176332 -196152015 - MIR SINE MIR 0 262 19 365 318 20 27 chr4 6176398 6176546 -196151801 - MIR3 SINE MIR -15 193 47 360 119 0 0 chr4 6176831 6176890 -196151457 + (TTCC)n Simple_repeat Simple_repeat 4 62 0 2256 97 7 3 chr4 6176901 6177189 -196151158 - AluSx SINE Alu -3 309 21 225 0 0 0 chr4 6177264 6177289 -196151058 + (CA)n Simple_repeat Simple_repeat 2 26 0 311 222 8 0 chr4 6177987 6178104 -196150243 + (CA)n Simple_repeat Simple_repeat 2 119 0 226 325 40 53 chr4 6178148 6178299 -196150048 + MIR SINE MIR 44 192 -70 222 191 0 0 chr4 6178893 6178935 -196149412 - MIR SINE MIR -113 149 108 27 0 0 0 chr4 6181805 6181832 -196146515 + GC_rich Low_complexity Low_complexity 1 27 0 225 132 57 19 chr4 6182225 6182278 -196146069 + (CCCCG)n Simple_repeat Simple_repeat 2 56 0 292 300 22 11 chr4 6183513 6183603 -196144744 - MIR3 SINE MIR -50 158 68 207 294 0 0 chr4 6184525 6184576 -196143771 - MIR SINE MIR -61 147 97 456 19 0 0 chr4 6184773 6184826 -196143521 + (CA)n Simple_repeat Simple_repeat 1 53 0 219 267 0 0 chr4 6185473 6185533 -196142814 + MIR SINE MIR 30 89 -119 195 255 21 0 chr4 6185744 6185791 -196142556 + L2 LINE L2 3266 3313 0 1244 154 25 57 chr4 6186394 6186674 -196141673 - MER46B DNA MER2_type -90 146 1 1708 191 49 47 chr4 6186745 6187136 -196141211 + MLT1C LTR MaLR 1 395 -72 2046 143 13 3 chr4 6187136 6187437 -196140910 - AluJo SINE Alu -4 308 5 1708 191 49 47 chr4 6187437 6187511 -196140836 + MLT1C LTR MaLR 395 467 0 237 279 0 0 chr4 6187911 6187972 -196140375 + MIR SINE MIR 87 147 -115 890 205 93 0 chr4 6189944 6190159 -196138188 + L1MCa LINE L1 19 253 -6173 3361 167 107 30 chr4 6190163 6190595 -196137752 + L1MCa LINE L1 777 1174 -5252 1598 204 42 0 chr4 6190595 6190879 -196137468 + AluJb SINE Alu 1 296 -16 3361 167 107 30 chr4 6190879 6191151 -196137196 + L1MCa LINE L1 1174 1424 -5002 2046 148 0 0 chr4 6191151 6191442 -196136905 + AluSx SINE Alu 1 291 -21 3361 167 107 30 chr4 6191442 6192063 -196136284 + L1MCa LINE L1 1424 2334 -4092 2344 110 0 0 chr4 6192063 6192371 -196135976 + AluSx SINE Alu 1 308 -4 3361 167 107 30 chr4 6192371 6192586 -196135761 + L1MCa LINE L1 2334 2531 -3895 22 0 0 0 chr4 6192726 6192748 -196135599 + AT_rich Low_complexity Low_complexity 1 22 0 1922 131 40 35 chr4 6193697 6194070 -196134277 + THE1C LTR MaLR 1 375 0 264 314 98 89 chr4 6194127 6194442 -196133905 + L2 LINE L2 2950 3267 -5 1942 163 31 16 chr4 6194835 6195216 -196133131 + MLT1B LTR MaLR 4 390 0 2083 123 0 0 chr4 6195668 6195944 -196132403 + AluSx SINE Alu 1 276 -36 180 77 0 0 chr4 6195945 6195971 -196132376 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 238 330 62 9 chr4 6196177 6196289 -196132058 - MIR SINE MIR -67 195 78 249 81 0 0 chr4 6196638 6196675 -196131672 - MIR SINE MIR -65 143 107 244 229 29 14 chr4 6197374 6197444 -196130903 + LTR67 LTR ERVL 100 170 -387 2298 100 37 0 chr4 6197941 6198241 -196130106 - AluSx SINE Alu -1 311 1 510 217 0 25 chr4 6198434 6198554 -196129793 + MIR SINE MIR 49 165 -97 375 23 0 0 chr4 6198760 6198804 -196129543 + (CA)n Simple_repeat Simple_repeat 2 45 0 1625 201 69 38 chr4 6199014 6199184 -196129163 + MLT1C LTR MaLR 7 170 -297 2316 99 0 0 chr4 6199184 6199498 -196128849 + AluSg SINE Alu 1 314 0 1625 201 69 38 chr4 6199498 6199772 -196128575 + MLT1C LTR MaLR 170 467 0 213 121 0 0 chr4 6199928 6199961 -196128386 + (T)n Simple_repeat Simple_repeat 1 33 0 313 311 0 80 chr4 6200606 6200756 -196127591 - MIR SINE MIR -61 147 12 2271 117 0 13 chr4 6200848 6201164 -196127183 + AluSx SINE Alu 1 312 0 368 283 177 34 chr4 6201597 6201834 -196126513 - L1ME4a LINE L1 -1 6120 5850 185 222 16 48 chr4 6202517 6202580 -196125767 - MIR3 SINE MIR -54 154 94 445 314 106 0 chr4 6202721 6202909 -196125438 + MIR SINE MIR 28 235 -27 795 237 40 0 chr4 6203299 6203476 -196124871 + MER5A DNA MER1_type 1 184 -5 3540 218 26 5 chr4 6203961 6204774 -196123573 + L1M4 LINE L1 3512 4341 -1805 197 291 45 64 chr4 6205799 6205909 -196122438 - MIR SINE MIR -71 191 84 278 360 128 6 chr4 6206387 6206551 -196121796 - L3 LINE CR1 -3 1574 1391 773 247 67 9 chr4 6206645 6206868 -196121479 - MIR SINE MIR -15 247 12 215 374 17 35 chr4 6207866 6207981 -196120366 - MIR SINE MIR -62 146 34 2103 206 62 12 chr4 6208026 6208507 -196119840 + MLT1D LTR MaLR 1 505 0 297 300 120 0 chr4 6209545 6209645 -196118702 - MIR SINE MIR -132 130 19 618 247 24 12 chr4 6210806 6210976 -196117371 - MER5B DNA MER1_type -3 175 4 412 220 31 101 chr4 6211760 6211919 -196116428 + MIR3 SINE MIR 53 200 -8 302 328 72 0 chr4 6212435 6212560 -196115787 - MIR SINE MIR -97 165 32 378 268 9 36 chr4 6213072 6213184 -196115163 + L2 LINE L2 3205 3313 0 209 344 158 23 chr4 6213329 6213544 -196114803 - MIR SINE MIR -14 248 5 297 374 0 39 chr4 6213607 6213762 -196114585 - MIR SINE MIR -2 260 112 371 316 12 65 chr4 6213851 6214036 -196114311 - MIR3 SINE MIR -54 154 12 265 296 35 35 chr4 6214023 6214138 -196114209 + MIR3 SINE MIR 48 162 -46 * 526 226 57 31 chr4 6214246 6214405 -196113942 - Charlie8 DNA MER1_type -2183 234 72 2555 164 15 4 chr4 6214411 6214882 -196113465 + L1MB3 LINE L1 5677 6152 -31 246 159 0 0 chr4 6214893 6214937 -196113410 - L1MB3 LINE L1 -33 6150 6107 245 289 24 24 chr4 6214940 6215023 -196113324 - Charlie8 DNA MER1_type -2322 95 13 299 283 142 0 chr4 6215615 6215728 -196112619 - MIR SINE MIR -63 145 17 331 314 59 13 chr4 6216099 6216252 -196112095 - MIR SINE MIR -41 221 62 285 235 31 41 chr4 6216789 6216887 -196111460 + Charlie4 DNA MER1_type 1860 1956 -5 251 306 71 66 chr4 6216930 6217126 -196111221 - L2 LINE L2 0 3272 3076 209 267 307 0 chr4 6217398 6217499 -196110848 - L2 LINE L2 -225 3047 2916 422 276 41 41 chr4 6217971 6218141 -196110206 - MER5A DNA MER1_type 0 189 20 380 305 65 5 chr4 6218538 6218738 -196109609 + L1MEd LINE L1 848 1059 -5060 576 259 45 77 chr4 6218750 6218970 -196109377 - L2 LINE L2 -225 3088 2876 329 294 73 0 chr4 6218976 6219112 -196109235 + L3 LINE CR1 1257 1402 -175 252 59 0 0 chr4 6219112 6219146 -196109201 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 416 291 86 32 chr4 6219159 6219379 -196108968 - L2 LINE L2 0 3313 3082 190 244 0 24 chr4 6219575 6219616 -196108731 - L2 LINE L2 -112 3160 3121 364 322 94 31 chr4 6220007 6220327 -196108020 + L2 LINE L2 2557 2896 -418 4282 173 9 0 chr4 6220409 6221203 -196107144 - L1 LINE L1 -809 5337 4537 2504 61 13 13 chr4 6221982 6222293 -196106054 - AluY SINE Alu 0 311 1 232 411 83 11 chr4 6222314 6222494 -196105853 - L3 LINE CR1 -30 1547 1355 279 114 0 0 chr4 6222777 6222830 -196105517 + MER63A DNA MER1_type 1 53 -157 2364 89 0 10 chr4 6222855 6223159 -196105188 + AluSc SINE Alu 6 306 -3 484 211 122 58 chr4 6223183 6223339 -196105008 + MER63A DNA MER1_type 44 209 -1 342 0 0 0 chr4 6223345 6223383 -196104964 + (TG)n Simple_repeat Simple_repeat 2 39 0 216 67 0 0 chr4 6223406 6223436 -196104911 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 2010 232 48 32 chr4 6223639 6224207 -196104140 - MER74B LTR ERVL 0 622 46 608 181 29 0 chr4 6224213 6224318 -196104029 + MIR SINE MIR 76 183 -79 197 345 0 0 chr4 6224413 6224471 -196103876 + L2 LINE L2 3240 3297 -16 401 287 0 0 chr4 6224927 6225056 -196103291 + L1ME4a LINE L1 5581 5709 -412 361 241 102 91 chr4 6225104 6225294 -196103053 + L1ME4a LINE L1 5836 6031 -90 2482 60 17 0 chr4 6225294 6225593 -196102754 - AluY SINE Alu -7 304 1 361 241 102 91 chr4 6225593 6225667 -196102680 + L1ME4a LINE L1 6031 6103 -18 189 400 0 0 chr4 6226168 6226243 -196102104 + L2 LINE L2 2639 2713 -601 325 327 127 22 chr4 6226613 6226888 -196101459 + MLT1L LTR MaLR 312 615 0 481 246 8 0 chr4 6227664 6227798 -196100549 - LTR16C LTR ERVL 0 491 357 316 203 14 29 chr4 6228221 6228290 -196100057 - MIR SINE MIR -108 154 87 2406 90 30 0 chr4 6228492 6228792 -196099555 - AluSc SINE Alu 0 309 1 366 331 23 39 chr4 6229368 6229498 -196098849 - MIR SINE MIR -118 144 17 471 256 40 45 chr4 6229879 6230055 -196098292 + MER5B DNA MER1_type 4 178 0 249 191 0 0 chr4 6230076 6230123 -196098224 - MIR SINE MIR -71 137 91 1556 171 62 50 chr4 6230940 6231279 -196097068 - MER2 DNA MER2_type 0 344 2 580 306 153 14 chr4 6231300 6231522 -196096825 + MIR SINE MIR 9 261 -1 2306 110 3 0 chr4 6231565 6231865 -196096482 - AluSx SINE Alu -11 301 1 294 312 52 0 chr4 6233535 6233612 -196094735 - L2 LINE L2 -19 3253 3173 543 279 58 0 chr4 6234213 6234385 -196093962 - MIR SINE MIR -53 209 28 2100 153 38 28 chr4 6234827 6235375 -196092972 + MLT2A2 LTR ERVL 1 554 0 190 268 196 18 chr4 6236783 6236895 -196091452 - L2 LINE L2 -85 3187 3056 1606 246 19 49 chr4 6237244 6237715 -196090632 + L1MB5 LINE L1 5712 6168 -6 206 313 92 46 chr4 6237958 6238089 -196090258 - L2 LINE L2 0 3272 3136 1980 124 39 72 chr4 6238529 6238917 -196089430 + THE1C LTR MaLR 1 375 0 432 55 0 0 chr4 6239434 6239489 -196088858 + (CA)n Simple_repeat Simple_repeat 1 55 0 288 313 0 42 chr4 6240070 6240166 -196088181 + L2 LINE L2 3178 3269 -3 306 346 30 0 chr4 6240178 6240279 -196088068 - L1ME LINE L1 -320 5801 5698 326 244 13 0 chr4 6241276 6241354 -196086993 + MIR3 SINE MIR 107 185 -23 249 322 44 11 chr4 6241855 6241945 -196086402 + L2 LINE L2 3140 3232 -40 231 350 26 26 chr4 6242549 6242666 -196085681 - MIR SINE MIR -63 145 29 1556 172 0 23 chr4 6243566 6243827 -196084520 - AluJo SINE Alu -53 259 5 401 304 43 7 chr4 6243893 6244031 -196084316 + MIR SINE MIR 108 250 -12 310 248 9 29 chr4 6244976 6245081 -196083266 + GA-rich Low_complexity Low_complexity 4 106 0 297 243 90 5 chr4 6245193 6245314 -196083033 + MIR SINE MIR 94 227 -35 270 278 133 34 chr4 6245456 6245690 -196082657 + L2 LINE L2 2676 2932 -382 947 250 39 4 chr4 6245948 6246180 -196082167 + MIR SINE MIR 2 241 -21 384 293 230 11 chr4 6246351 6246525 -196081822 + L1MEd LINE L1 300 511 -5608 272 323 67 24 chr4 6246567 6246595 -196081752 + L1MEd LINE L1 652 677 -5442 2444 85 0 0 chr4 6246595 6246900 -196081447 + AluSg SINE Alu 1 305 -5 272 323 67 24 chr4 6246900 6247035 -196081312 + L1MEd LINE L1 677 822 -5297 328 221 167 135 chr4 6247063 6247285 -196081062 - MIR SINE MIR -5 257 29 364 275 76 72 chr4 6247291 6247373 -196080974 + L1MEd LINE L1 990 1070 -5240 2417 92 0 0 chr4 6247373 6247677 -196080670 + AluSq SINE Alu 5 308 -5 364 275 76 72 chr4 6247677 6248287 -196080060 + L1MEd LINE L1 1070 1734 -4576 1129 281 55 30 chr4 6248670 6249445 -196078902 + L1MEd LINE L1 2114 2908 -3221 277 317 79 30 chr4 6249637 6249738 -196078609 + MIR3 SINE MIR 65 170 -38 192 77 0 0 chr4 6249871 6249897 -196078450 + (T)n Simple_repeat Simple_repeat 1 26 0 2209 80 7 11 chr4 6250049 6250362 -196077985 + AluSq SINE Alu 1 312 0 2838 129 16 0 chr4 6250955 6251381 -196076966 + MER72 LTR ERV1 290 722 0 1508 245 55 52 chr4 6251673 6252216 -196076131 + MLT1H LTR MaLR 2 546 -3 747 313 9 8 chr4 6252255 6252501 -196075846 - MIR SINE MIR -1 261 16 212 305 29 38 chr4 6252638 6252743 -196075604 - L2 LINE L2 0 3272 3169 195 161 232 0 chr4 6252817 6252873 -196075474 - MIR SINE MIR -113 149 81 399 286 67 37 chr4 6253371 6253600 -196074747 + MIR SINE MIR 4 237 -25 673 229 202 0 chr4 6253646 6253864 -196074483 - MIR SINE MIR 0 262 1 272 264 74 47 chr4 6253946 6254094 -196074253 + L1ME4a LINE L1 5967 6118 -3 381 256 31 56 chr4 6254571 6254731 -196073616 + MIR SINE MIR 57 212 -50 340 326 0 0 chr4 6256025 6256123 -196072224 - MIR SINE MIR -119 143 46 238 250 44 0 chr4 6256667 6256735 -196071612 - MIR3 SINE MIR -48 160 90 537 291 58 5 chr4 6256959 6257165 -196071182 + LTR33 LTR ERVL 50 266 -255 2976 128 22 27 chr4 6257474 6258032 -196070315 + LTR10E LTR ERV1 11 609 0 621 244 51 97 chr4 6259343 6259472 -196068875 + L1MC5 LINE L1 7120 7253 -708 2314 123 0 0 chr4 6259472 6259604 -196068743 + AluSx SINE Alu 1 132 -180 2225 104 7 3 chr4 6259604 6259901 -196068446 + AluSc SINE Alu 1 298 -11 2314 123 0 0 chr4 6259901 6260077 -196068270 + AluSx SINE Alu 131 309 -3 621 244 51 97 chr4 6260077 6260378 -196067969 + L1MC5 LINE L1 7253 7530 -431 1732 182 6 88 chr4 6260380 6260794 -196067553 + L1MB3 LINE L1 5744 6190 7 2391 99 0 7 chr4 6260794 6261096 -196067251 + AluSq SINE Alu 1 300 -13 1732 182 6 88 chr4 6261096 6261126 -196067221 + L1MB3 LINE L1 6190 6150 -33 348 67 34 157 chr4 6261126 6261215 -196067132 + MADE1 DNA Mariner 2 79 -1 1732 182 6 88 chr4 6261215 6261246 -196067101 + L1MB3 LINE L1 6149 6181 -2 720 257 124 40 chr4 6261246 6261600 -196066747 + L1MC5 LINE L1 7533 7916 -45 191 219 45 6 chr4 6261618 6261695 -196066652 + MIR SINE MIR 49 115 -93 201 303 15 0 chr4 6261884 6261950 -196066397 + L2 LINE L2 3231 3297 -16 348 83 0 0 chr4 6261958 6262006 -196066341 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 341 245 51 10 chr4 6262472 6262570 -196065777 - MIR SINE MIR -75 133 32 325 247 12 0 chr4 6263169 6263250 -196065097 - L2 LINE L2 -6 3307 3226 319 73 36 0 chr4 6263320 6263375 -196064972 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 291 217 58 92 chr4 6264294 6264414 -196063933 + MLT1H LTR MaLR 421 536 -13 239 235 0 0 chr4 6264434 6264485 -196063862 - MIR SINE MIR -145 117 67 237 258 48 16 chr4 6264885 6264947 -196063400 - MER91A DNA MER1_type -10 186 123 324 297 195 0 chr4 6264986 6265114 -196063233 - MER91A DNA MER1_type -43 153 1 329 301 75 8 chr4 6266275 6266408 -196061939 - MIR SINE MIR -21 241 100 303 302 35 59 chr4 6266970 6267139 -196061208 + L1MC/D LINE L1 5494 5658 -2150 381 193 36 0 chr4 6267139 6267222 -196061125 - Tigger3(Golem) DNA MER2_type 0 3029 2944 390 252 109 0 chr4 6267328 6267475 -196060872 + L2 LINE L2 2928 3090 -182 360 206 63 48 chr4 6268944 6269070 -196059277 + L1MD3 LINE L1 7853 7980 -15 209 354 135 25 chr4 6269488 6269807 -196058540 + L2 LINE L2 2918 3271 -1 1092 176 39 5 chr4 6269991 6270196 -196058151 - MER20 DNA MER1_type -7 212 1 185 384 73 33 chr4 6270806 6270957 -196057390 - MIR SINE MIR 0 262 106 254 315 19 94 chr4 6271654 6271867 -196056480 - L2 LINE L2 -80 3192 2996 940 81 0 0 chr4 6271967 6272078 -196056269 + AluSx SINE Alu 13 123 -190 1362 126 0 0 chr4 6272233 6272415 -196055932 + AluSx SINE Alu 112 293 -19 266 273 13 0 chr4 6272436 6272513 -196055834 - MER116 DNA Mariner -1 79 2 866 264 35 9 chr4 6272514 6272741 -196055606 - MIR SINE MIR -3 259 27 228 313 15 0 chr4 6273253 6273320 -196055027 - L2 LINE L2 -4 3268 3201 457 311 79 6 chr4 6273702 6273879 -196054468 + MIR SINE MIR 10 199 -63 2288 112 23 0 chr4 6274079 6274384 -196053963 - AluSx SINE Alu 0 312 1 262 342 0 52 chr4 6274540 6274695 -196053652 - MIR SINE MIR 0 262 116 334 301 128 15 chr4 6274816 6275012 -196053335 - MIR SINE MIR -19 243 26 2532 79 0 0 chr4 6275577 6275880 -196052467 + AluSg SINE Alu 1 303 -7 199 315 33 22 chr4 6276626 6276718 -196051629 - MIR3 SINE MIR -49 159 67 266 284 68 0 chr4 6276906 6276980 -196051367 - MIR SINE MIR -111 151 73 240 70 23 0 chr4 6277168 6277211 -196051136 + L1PB1 LINE L1 6107 6150 -1 2158 127 3 0 chr4 6277283 6277590 -196050757 + AluSx SINE Alu 1 308 -4 2285 90 14 0 chr4 6277749 6278037 -196050310 - AluSc SINE Alu -17 292 1 303 297 55 21 chr4 6278164 6278309 -196050038 - L1ME LINE L1 -380 5741 5592 370 336 0 15 chr4 6279253 6279390 -196048957 + L2 LINE L2 2949 3083 -189 259 330 43 27 chr4 6279589 6279774 -196048573 + L2 LINE L2 2864 3051 -221 411 380 22 11 chr4 6280026 6280210 -196048137 + MIR SINE MIR 7 192 -70 255 276 20 51 chr4 6280703 6280801 -196047546 - MIR SINE MIR -8 254 160 2450 75 7 0 chr4 6283098 6283392 -196044955 - AluSc SINE Alu -13 296 1 259 303 65 45 chr4 6283526 6283681 -196044666 + MIR3 SINE MIR 14 171 -37 289 234 70 16 chr4 6283937 6284065 -196044282 + MIR3 SINE MIR 3 137 -71 196 330 70 51 chr4 6284107 6284380 -196043967 - L2 LINE L2 -1 3271 2994 209 253 209 0 chr4 6285180 6285271 -196043076 + MIR SINE MIR 36 145 -63 263 254 160 41 chr4 6285566 6285735 -196042612 - MIR3 SINE MIR -17 191 3 2554 86 0 3 chr4 6285946 6286259 -196042088 + AluSx SINE Alu 1 312 0 1652 136 93 4 chr4 6286585 6286878 -196041469 - AluJb SINE Alu 0 316 1 2492 68 0 34 chr4 6287253 6287575 -196040772 + AluY SINE Alu 1 311 0 736 264 50 21 chr4 6287658 6287900 -196040447 + MIR SINE MIR 14 262 0 859 279 119 22 chr4 6287904 6288356 -196039991 + MLT1H1 LTR MaLR 5 500 -55 245 371 19 9 chr4 6288595 6288808 -196039539 - L1MC/D LINE L1 -1959 5849 5635 1266 195 19 11 chr4 6288955 6289318 -196039029 + L1M4 LINE L1 5188 5556 -628 504 260 82 32 chr4 6289341 6289582 -196038765 + L1ME LINE L1 1003 1316 -5056 324 306 46 31 chr4 6289667 6289863 -196038484 + L1ME LINE L1 5477 5675 -446 506 363 46 16 chr4 6290051 6290547 -196037800 + L1MC4a LINE L1 5400 5910 -1898 255 121 35 17 chr4 6290644 6290702 -196037645 - L1MD1 LINE L1 -10 6232 6174 297 133 0 0 chr4 6290716 6290761 -196037586 - Alu SINE Alu -13 289 245 755 244 45 25 chr4 6290761 6290962 -196037385 - L1MD2 LINE L1 -76 6283 6079 220 255 0 0 chr4 6292159 6292210 -196036137 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chr4 6292217 6292245 -196036102 + AT_rich Low_complexity Low_complexity 1 28 0 2501 83 3 0 chr4 6292492 6292793 -196035554 - AluSp SINE Alu -11 302 1 635 250 38 19 chr4 6293656 6293816 -196034531 + MER63 DNA MER1_type 1 789 -47 247 319 14 0 chr4 6294065 6294137 -196034210 - L2 LINE L2 -522 2792 2720 779 272 92 10 chr4 6294250 6294625 -196033722 + L2 LINE L2 2624 3040 -273 597 318 68 58 chr4 6294653 6296777 -196031570 + L1MEc LINE L1 94 2246 -4150 2139 138 0 3 chr4 6296777 6297081 -196031266 + AluSx SINE Alu 3 305 -7 597 318 68 58 chr4 6297081 6297134 -196031213 + L1MEc LINE L1 2246 2297 -4099 * 1120 263 45 12 chr4 6297109 6297535 -196030812 + L1MEc LINE L1 2561 3000 -3215 2490 87 0 0 chr4 6297628 6297926 -196030421 - AluSg SINE Alu -12 298 1 667 226 99 31 chr4 6298026 6298218 -196030129 + L1MEc LINE L1 2987 3207 -3008 2266 113 3 3 chr4 6298218 6298528 -196029819 + AluSx SINE Alu 1 310 -2 667 226 99 31 chr4 6298528 6298627 -196029720 + L1MEc LINE L1 3207 3298 -2917 280 242 19 12 chr4 6298641 6298802 -196029545 + GA-rich Low_complexity Low_complexity 1 162 0 186 296 43 26 chr4 6298918 6299033 -196029314 - MIR SINE MIR -126 136 20 462 311 37 47 chr4 6299185 6299375 -196028972 + MIR SINE MIR 10 197 -65 855 310 113 25 chr4 6301980 6302307 -196026040 + L2 LINE L2 2837 3213 -100 608 271 155 0 chr4 6302307 6302488 -196025859 - MER3 DNA MER1_type 0 209 1 855 310 113 25 chr4 6302488 6302595 -196025752 + L2 LINE L2 3213 3309 -4 346 191 0 0 chr4 6303119 6303182 -196025165 + MIR SINE MIR 83 145 -117 192 290 97 0 chr4 6303392 6303485 -196024862 - MIR SINE MIR -74 134 33 196 335 110 19 chr4 6303530 6303685 -196024662 + MIR SINE MIR 70 238 -24 208 243 32 55 chr4 6304234 6304338 -196024009 + MIR SINE MIR 44 146 -62 2163 125 0 0 chr4 6304624 6304936 -196023411 + AluSx SINE Alu 1 312 0 23 0 0 0 chr4 6304936 6304959 -196023388 + AT_rich Low_complexity Low_complexity 1 23 0 288 341 12 54 chr4 6305212 6305379 -196022968 + MIR SINE MIR 36 195 -67 198 156 0 0 chr4 6305669 6305701 -196022646 - MIR SINE MIR -67 141 110 2006 114 13 13 chr4 6305881 6306196 -196022151 + MER1B DNA MER1_type 25 339 0 396 0 0 0 chr4 6306564 6306608 -196021739 + (CA)n Simple_repeat Simple_repeat 2 45 0 276 301 93 83 chr4 6306648 6306841 -196021506 + L2 LINE L2 3077 3271 -1 366 268 62 10 chr4 6306884 6306981 -196021366 - L2 LINE L2 -3 3310 3209 203 290 124 51 chr4 6307520 6307737 -196020610 + L2 LINE L2 2849 3081 -191 209 364 10 10 chr4 6307787 6307886 -196020461 + MER5B DNA MER1_type 5 103 -75 324 287 32 25 chr4 6308060 6308217 -196020130 + GA-rich Low_complexity Low_complexity 2 159 0 385 259 35 9 chr4 6308349 6308465 -196019882 - L2 LINE L2 -8 3305 3187 401 347 31 26 chr4 6308472 6308665 -196019682 - MIR3 SINE MIR -14 194 1 419 321 71 43 chr4 6308734 6309242 -196019105 - L1ME4a LINE L1 -59 6062 5541 371 324 48 53 chr4 6309273 6309480 -196018867 - L1ME4a LINE L1 -2330 5478 5273 184 351 168 15 chr4 6309711 6309913 -196018434 + L2 LINE L2 3004 3236 -36 415 225 116 29 chr4 6310332 6310470 -196017877 + MIR SINE MIR 34 183 -79 366 214 0 12 chr4 6311938 6312022 -196016325 + MLT1A1 LTR MaLR 1 83 -282 1626 79 19 5 chr4 6312241 6312457 -196015890 - AluSg/x SINE Alu -11 299 81 494 289 75 6 chr4 6312758 6312917 -196015430 - L2 LINE L2 -1 3312 3143 1559 190 91 23 chr4 6313113 6313544 -196014803 + MLT1C LTR MaLR 6 465 -2 323 318 70 0 chr4 6313926 6314055 -196014292 + MIR SINE MIR 71 208 -54 958 148 9 7 chr4 6314498 6314748 -196013599 + (ATGGTG)n Simple_repeat Simple_repeat 1 427 0 1006 137 12 2 chr4 6314748 6315170 -196013177 + (ATG)n Simple_repeat Simple_repeat 1 604 0 328 301 6 25 chr4 6315899 6316062 -196012285 + GA-rich Low_complexity Low_complexity 2 161 0 831 75 0 0 chr4 6316130 6316250 -196012097 + (TCCA)n Simple_repeat Simple_repeat 1 120 0 382 287 16 25 chr4 6316250 6316372 -196011975 - L2 LINE L2 -13 3300 3180 372 248 90 8 chr4 6317233 6317366 -196010981 + MLT1J2 LTR MaLR 67 210 -240 404 211 22 0 chr4 6317458 6317548 -196010799 + MLT1I LTR MaLR 317 408 -1 231 342 40 20 chr4 6317729 6317878 -196010469 + L2 LINE L2 2636 2787 -527 241 250 65 9 chr4 6318139 6318247 -196010100 + MER103 DNA DNA 6 119 -47 189 238 0 0 chr4 6318334 6318376 -196009971 - MIR SINE MIR -55 153 112 477 264 48 0 chr4 6318698 6318823 -196009524 - MIR SINE MIR -36 226 96 963 213 54 77 chr4 6318988 6319298 -196009049 + MLT1A1 LTR MaLR 1 304 -61 1664 171 0 49 chr4 6319298 6319603 -196008744 - AluJb SINE Alu -22 290 1 963 213 54 77 chr4 6319603 6319645 -196008702 + MLT1A1 LTR MaLR 304 345 -20 436 306 19 32 chr4 6320192 6320349 -196007998 + MIR SINE MIR 9 163 -99 236 360 56 8 chr4 6320460 6320585 -196007762 + L2 LINE L2 3103 3233 -39 613 219 27 27 chr4 6320920 6321066 -196007281 + L2 LINE L2 3167 3312 -1 427 282 63 14 chr4 6322015 6322157 -196006190 - MER5B DNA MER1_type -16 162 14 566 208 101 0 chr4 6322178 6322327 -196006020 - MER5A DNA MER1_type 0 189 26 193 331 39 47 chr4 6322306 6322433 -196005914 - MIR SINE MIR -96 166 41 * 410 288 88 12 chr4 6322410 6322580 -196005767 + MIR SINE MIR 80 262 0 180 367 60 60 chr4 6322616 6322815 -196005532 + L2 LINE L2 3032 3230 -42 337 280 150 24 chr4 6323288 6323495 -196004852 + L2 LINE L2 2553 2785 -529 264 308 98 49 chr4 6323492 6323778 -196004569 + L2 LINE L2 2921 3220 -52 * 457 309 53 0 chr4 6324185 6324337 -196004010 + MIR SINE MIR 30 189 -73 553 172 15 20 chr4 6324446 6324838 -196003509 + CT-rich Low_complexity Low_complexity 1 390 0 1177 188 64 38 chr4 6324838 6325104 -196003243 - AluJb SINE Alu -39 273 1 267 278 121 52 chr4 6325160 6325333 -196003014 - MIR3 SINE MIR -20 188 4 23 92 0 0 chr4 6326642 6326707 -196001640 + GC_rich Low_complexity Low_complexity 1 65 0 27 85 0 11 chr4 6326885 6326954 -196001393 + GC_rich Low_complexity Low_complexity 1 70 -23 198 71 0 0 chr4 6326954 6326982 -196001365 + (CTG)n Simple_repeat Simple_repeat 1 28 0 27 85 0 11 chr4 6326982 6327006 -196001341 + GC_rich Low_complexity Low_complexity 70 93 0 198 0 0 0 chr4 6329378 6329400 -195998947 + (TG)n Simple_repeat Simple_repeat 2 23 0 292 74 0 37 chr4 6330804 6330858 -195997489 + (TCCCC)n Simple_repeat Simple_repeat 2 53 0 2375 158 21 8 chr4 6331179 6331564 -195996783 - MLT1B LTR MaLR 0 390 1 240 296 83 15 chr4 6331704 6331836 -195996511 - L2 LINE L2 -213 3059 2919 714 319 32 0 chr4 6332006 6332222 -195996125 + MIR SINE MIR 28 250 -12 214 360 45 0 chr4 6334289 6334400 -195993947 + L3 LINE CR1 1415 1530 -47 352 250 11 22 chr4 6334644 6334736 -195993611 + MIR3 SINE MIR 109 199 -9 247 247 49 23 chr4 6334872 6334986 -195993361 + MIR SINE MIR 41 153 -62 330 301 204 28 chr4 6335162 6335481 -195992866 - L2 LINE L2 -20 3252 2878 491 377 20 16 chr4 6337095 6337339 -195991008 - MIR SINE MIR 0 262 18 1990 121 28 0 chr4 6337352 6337634 -195990713 + AluSx SINE Alu 1 290 -22 633 99 0 0 chr4 6337648 6337729 -195990618 + AluSg/x SINE Alu 210 290 -22 633 99 0 0 chr4 6337743 6337824 -195990523 + AluSg/x SINE Alu 210 290 -22 3163 176 15 19 chr4 6337844 6338422 -195989925 - L1MB3 LINE L1 0 6183 5606 1857 164 0 7 chr4 6338422 6338720 -195989627 - AluJo SINE Alu -16 296 1 3163 176 15 19 chr4 6338720 6338736 -195989611 - L1MB3 LINE L1 -577 5606 5591 434 218 32 51 chr4 6339475 6339631 -195988716 - Charlie4 DNA MER1_type 0 1961 1809 893 234 40 4 chr4 6339663 6339915 -195988432 - Charlie4 DNA MER1_type -1667 294 34 2258 96 0 10 chr4 6339963 6340277 -195988070 + AluSx SINE Alu 1 311 -1 320 239 103 60 chr4 6340419 6340536 -195987811 + L2 LINE L2 3175 3296 -17 222 37 0 0 chr4 6341031 6341058 -195987289 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 235 321 12 0 chr4 6342642 6342723 -195985624 - L2 LINE L2 -1 3271 3190 216 0 0 0 chr4 6342838 6342862 -195985485 + (GCTTG)n Simple_repeat Simple_repeat 3 26 0 185 400 94 12 chr4 6343233 6343403 -195984944 + MIR SINE MIR 60 243 -19 1677 166 11 0 chr4 6344504 6344781 -195983566 - AluJo SINE Alu -30 282 3 191 310 186 21 chr4 6344843 6344988 -195983359 + MIR SINE MIR 57 225 -37 207 69 0 0 chr4 6345416 6345445 -195982902 + (GGGA)n Simple_repeat Simple_repeat 2 30 0 1980 109 60 0 chr4 6345587 6345871 -195982476 - AluSx SINE Alu -11 301 1 867 200 23 36 chr4 6346565 6346785 -195981562 - MLT1K LTR MaLR 0 588 372 361 269 31 8 chr4 6346855 6346985 -195981362 - MLT1K LTR MaLR -331 257 125 412 260 32 8 chr4 6347851 6347974 -195980373 - MIR SINE MIR -63 145 20 1664 207 102 8 chr4 6348363 6348725 -195979622 + MSTD LTR MaLR 1 396 0 250 333 0 0 chr4 6348849 6348918 -195979429 - L3 LINE CR1 -101 1476 1408 4400 127 44 83 chr4 6349137 6350152 -195978195 + pTR5 LTR ERV1 729 2025 -413 364 235 10 0 chr4 6350152 6350250 -195978097 + LTR30 LTR ERV1 544 642 -80 1229 98 57 0 chr4 6350251 6350445 -195977902 + LTR12 LTR ERV1 377 581 -133 1860 214 110 2 chr4 6350591 6351044 -195977303 - MLT1D LTR MaLR 0 505 4 331 264 104 57 chr4 6353078 6353290 -195975057 + L2 LINE L2 2747 2968 -346 270 300 25 0 chr4 6353568 6353648 -195974699 - MER5B DNA MER1_type -43 135 54 2568 90 33 11 chr4 6353667 6354034 -195974313 - THE1C LTR MaLR 0 375 1 219 315 41 68 chr4 6355464 6355610 -195972737 - MER5A DNA MER1_type -1 188 47 * 232 287 52 73 chr4 6355486 6355622 -195972725 + MER5A DNA MER1_type 35 167 -22 392 323 138 4 chr4 6355823 6356055 -195972292 - L2 LINE L2 -9 3263 3001 413 300 45 35 chr4 6356056 6356256 -195972091 - L2 LINE L2 -4 3309 3108 1478 246 130 6 chr4 6356367 6356874 -195971473 + L1MB8 LINE L1 5603 6172 -6 490 367 72 30 chr4 6357509 6357537 -195970810 - L1ME4a LINE L1 -196 5925 5900 237 33 0 0 chr4 6357537 6357567 -195970780 + (CA)n Simple_repeat Simple_repeat 1 30 0 490 367 72 30 chr4 6357567 6357843 -195970504 - L1ME4a LINE L1 -221 5900 5608 231 297 148 16 chr4 6358063 6358191 -195970156 + MIR SINE MIR 28 172 -90 871 135 135 6 chr4 6358777 6358955 -195969392 - MSTA LTR MaLR -227 201 1 257 333 0 0 chr4 6359278 6359362 -195968985 + L2 LINE L2 2987 3070 -202 289 304 72 16 chr4 6359495 6359620 -195968727 + L2 LINE L2 3134 3265 -7 638 304 65 0 chr4 6360016 6360263 -195968084 - MLT1G LTR MaLR -316 274 12 318 292 205 11 chr4 6360388 6360573 -195967774 - MIR SINE MIR -8 254 34 1335 196 108 25 chr4 6362260 6362613 -195965734 - MLT1B LTR MaLR -8 382 1 307 130 0 14 chr4 6365091 6365152 -195963195 - MLT2C1 LTR ERVL 0 397 350 1262 205 28 75 chr4 6365221 6365623 -195962724 - MLT2D LTR ERVL -40 480 1 390 91 0 0 chr4 6365671 6365726 -195962621 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 195 260 20 0 chr4 6365729 6365779 -195962568 - L2 LINE L2 -1 3312 3262 206 297 55 61 chr4 6365836 6366001 -195962346 - L2 LINE L2 -162 3110 2947 349 339 60 12 chr4 6367868 6368036 -195960311 + MIR SINE MIR 36 211 -51 247 176 20 0 chr4 6368054 6368105 -195960242 + MIR3 SINE MIR 105 156 -52 209 273 0 0 chr4 6368869 6368913 -195959434 + L2 LINE L2 3215 3258 -14 398 308 0 0 chr4 6369499 6369606 -195958741 - MIR SINE MIR -75 187 81 266 222 86 37 chr4 6370131 6370212 -195958135 - L2 LINE L2 -49 3264 3180 579 284 72 18 chr4 6370297 6370631 -195957716 - L2 LINE L2 -143 3170 2819 2156 121 3 0 chr4 6370736 6371042 -195957305 - AluSx SINE Alu -5 307 1 228 67 0 0 chr4 6371689 6371719 -195956628 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 285 196 0 0 chr4 6371832 6371883 -195956464 + MIR SINE MIR 104 154 -108 192 231 0 0 chr4 6372707 6372759 -195955588 + (TG)n Simple_repeat Simple_repeat 1 52 0 206 301 43 21 chr4 6374209 6374302 -195954045 + MIR SINE MIR 45 139 -69 341 148 0 0 chr4 6375028 6375089 -195953258 - MER53 DNA DNA -2 187 127 2126 85 0 14 chr4 6375089 6375390 -195952957 - AluSq SINE Alu 0 307 11 257 303 28 56 chr4 6375661 6375803 -195952544 - L2 LINE L2 -18 3295 3158 1640 164 20 30 chr4 6376359 6376658 -195951689 - AluJo SINE Alu -10 302 7 656 252 86 13 chr4 6377538 6377954 -195950393 - MER68 LTR ERV1 -9 553 72 413 294 94 25 chr4 6379624 6379784 -195948563 + MIR SINE MIR 20 190 -72 326 247 27 0 chr4 6380001 6380074 -195948273 - MIR SINE MIR -56 152 78 477 242 61 15 chr4 6382614 6382746 -195945601 + MIR SINE MIR 77 214 -48 241 298 70 9 chr4 6382791 6382905 -195945442 + MIR3 SINE MIR 83 203 -5 869 231 141 27 chr4 6383245 6383761 -195944586 - MLT1G LTR MaLR 0 577 19 532 291 51 15 chr4 6383778 6383974 -195944373 - MIR SINE MIR -12 250 48 2033 121 0 3 chr4 6384183 6384501 -195943846 + AluSx SINE Alu 1 317 0 368 296 38 8 chr4 6385190 6385322 -195943025 + MIR3 SINE MIR 22 157 -51 476 283 0 50 chr4 6385327 6385507 -195942840 - MLT1K LTR MaLR -16 572 402 264 342 51 25 chr4 6385734 6385892 -195942455 + MIR SINE MIR 5 166 -96 273 284 32 65 chr4 6385895 6386050 -195942297 - MLT1J LTR MaLR -231 280 131 310 247 26 13 chr4 6386681 6386758 -195941589 + L1ME4a LINE L1 6044 6121 0 310 281 9 53 chr4 6386860 6386974 -195941373 + MER94 DNA DNA 3 111 -23 3412 175 27 2 chr4 6388139 6388891 -195939456 + L1PB4 LINE L1 5381 6164 -2 219 366 59 0 chr4 6388954 6389055 -195939292 + MIR SINE MIR 75 181 -81 185 229 213 0 chr4 6389110 6389171 -195939176 - MER5A DNA MER1_type -84 105 32 249 257 0 0 chr4 6389233 6389303 -195939044 + (TG)n Simple_repeat Simple_repeat 1 70 0 316 278 201 16 chr4 6389363 6389557 -195938790 - L2 LINE L2 -42 3230 3001 431 176 0 0 chr4 6390412 6390486 -195937861 - MIR SINE MIR -110 152 79 256 175 140 0 chr4 6390910 6390967 -195937380 + MIR SINE MIR 81 145 -117 433 145 0 0 chr4 6391027 6391096 -195937251 - THE1C LTR MaLR 0 375 307 1951 148 0 13 chr4 6391096 6391406 -195936941 - AluSx SINE Alu -1 311 6 244 260 0 0 chr4 6391510 6391560 -195936787 + (TGG)n Simple_repeat Simple_repeat 2 51 0 218 342 0 0 chr4 6393666 6393742 -195934605 + L2 LINE L2 3197 3272 0 261 119 0 0 chr4 6393742 6393784 -195934563 + (TGAG)n Simple_repeat Simple_repeat 2 43 0 266 267 89 52 chr4 6395032 6395223 -195933124 + L2 LINE L2 3027 3224 -89 2016 229 53 58 chr4 6395326 6395963 -195932384 + L1ME1 LINE L1 5491 6126 -40 2297 95 0 3 chr4 6395963 6396268 -195932079 + AluSq SINE Alu 1 304 -9 2016 229 53 58 chr4 6396268 6396304 -195932043 + L1ME1 LINE L1 6126 6161 -5 260 146 0 139 chr4 6398361 6398512 -195929835 + (CTGGGG)n Simple_repeat Simple_repeat 3 132 0 545 308 31 39 chr4 6398680 6398940 -195929407 - Charlie8 DNA MER1_type -2159 258 1 240 86 0 0 chr4 6398967 6399002 -195929345 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 215 262 16 16 chr4 6400679 6400740 -195927607 + MIR SINE MIR 81 141 -67 261 224 17 0 chr4 6400844 6400902 -195927445 + L2 LINE L2 2997 3055 -217 186 43 0 0 chr4 6401080 6401103 -195927244 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 269 311 78 50 chr4 6401719 6401899 -195926448 + MIR SINE MIR 7 191 -71 309 269 54 0 chr4 6402314 6402407 -195925940 + MIR SINE MIR 104 201 -61 6845 58 29 2 chr4 6402457 6403482 -195924865 + L1PA7 LINE L1 5106 6153 -1 556 273 109 16 chr4 6403492 6403869 -195924478 - LTR33 LTR ERVL -65 456 45 315 295 11 11 chr4 6403955 6404050 -195924297 - MIR3 SINE MIR -49 159 65 198 0 0 0 chr4 6404413 6404435 -195923912 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 223 254 0 17 chr4 6404510 6404569 -195923778 - MIR SINE MIR -56 152 95 211 327 84 0 chr4 6404837 6404944 -195923403 - MIR SINE MIR -145 117 2 458 317 49 22 chr4 6405654 6405837 -195922510 + MIR SINE MIR 2 189 -73 197 330 152 35 chr4 6407902 6408320 -195920027 + L2 LINE L2 2738 3268 -45 599 233 7 0 chr4 6408320 6408470 -195919877 - L1 LINE L1 -1764 4382 4232 * 2220 145 0 3 chr4 6408469 6408849 -195919498 + L1PB3 LINE L1 5734 6112 -42 198 103 0 0 chr4 6408995 6409024 -195919323 + (CACCAT)n Simple_repeat Simple_repeat 4 32 0 655 116 0 101 chr4 6409035 6409234 -195919113 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 655 116 0 101 chr4 6409248 6409447 -195918900 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 340 97 32 0 chr4 6409459 6409521 -195918826 + (CACCAT)n Simple_repeat Simple_repeat 5 68 0 688 176 23 6 chr4 6409532 6409708 -195918639 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 208 107 0 0 chr4 6409708 6409736 -195918611 + (CAT)n Simple_repeat Simple_repeat 1 28 0 343 317 137 22 chr4 6410245 6410428 -195917919 - MIR SINE MIR -6 256 53 660 310 70 0 chr4 6410472 6410685 -195917662 + MIR SINE MIR 35 262 0 220 98 0 59 chr4 6411775 6411826 -195916521 + (TTCC)n Simple_repeat Simple_repeat 4 51 0 318 333 150 8 chr4 6412061 6412460 -195915887 + L2 LINE L2 2817 3272 0 672 365 73 0 chr4 6412520 6412876 -195915471 + L3 LINE CR1 767 1148 -429 620 324 14 19 chr4 6412889 6413102 -195915245 + MIR SINE MIR 8 219 -43 1408 141 94 7 chr4 6414317 6414594 -195913753 + THE1B LTR MaLR 1 301 -63 871 207 45 21 chr4 6415379 6415621 -195912726 - ORSL DNA AcHobo -20 255 8 279 365 116 5 chr4 6416695 6416884 -195911463 + MIR SINE MIR 28 237 -25 563 250 6 0 chr4 6418606 6419280 -195909067 + (CA)n Simple_repeat Simple_repeat 1 678 0 557 232 6 0 chr4 6419297 6419465 -195908882 + (CA)n Simple_repeat Simple_repeat 2 170 0 629 232 0 6 chr4 6419481 6419805 -195908542 + (CA)n Simple_repeat Simple_repeat 1 321 0 529 366 78 70 chr4 6420107 6420782 -195907565 - L1MC4a LINE L1 -1611 6197 5517 254 303 46 9 chr4 6421227 6421336 -195907011 - L2 LINE L2 -4 3268 3156 189 203 68 54 chr4 6421664 6421738 -195906609 - MER5A DNA MER1_type -89 100 26 204 195 0 0 chr4 6422752 6422793 -195905554 - MIR SINE MIR -113 149 109 285 344 45 45 chr4 6423331 6423488 -195904859 + MIR3 SINE MIR 35 191 -17 517 237 9 0 chr4 6423664 6423778 -195904569 - MER45A DNA AcHobo -2 176 62 2196 95 3 3 chr4 6425603 6425897 -195902450 - AluSq SINE Alu -19 294 1 254 211 18 0 chr4 6426716 6426773 -195901574 - L2 LINE L2 -211 3061 3004 1033 214 91 53 chr4 6427608 6427940 -195900407 + MLT1C LTR MaLR 2 360 -107 2244 102 0 0 chr4 6427940 6428235 -195900112 - AluSc SINE Alu -14 295 1 1033 214 91 53 chr4 6428235 6428348 -195899999 + MLT1C LTR MaLR 360 467 0 341 341 24 2 chr4 6429551 6429689 -195898658 + MIR SINE MIR 11 143 -65 196 402 45 0 chr4 6429755 6429867 -195898480 + L2 LINE L2 3181 3297 -16 424 220 10 0 chr4 6429872 6429972 -195898375 + L1MB3 LINE L1 5639 5739 -432 2204 85 10 0 chr4 6429972 6430266 -195898081 + AluSg SINE Alu 1 297 -13 1419 182 18 74 chr4 6430268 6430471 -195897876 + L1MB3 LINE L1 5823 5997 -186 2177 86 0 0 chr4 6430471 6430761 -195897586 - AluSx SINE Alu -22 290 1 1419 182 18 74 chr4 6430761 6430937 -195897410 + L1MB3 LINE L1 5997 6181 -2 202 256 56 44 chr4 6431286 6431376 -195896971 - MIR SINE MIR -159 103 13 2053 200 57 36 chr4 6431471 6431730 -195896617 + MER66B LTR ERV1 1 276 -210 1794 66 91 0 chr4 6431730 6431971 -195896376 + AluSg SINE Alu 1 263 -47 2053 200 57 36 chr4 6431971 6432185 -195896162 + MER66B LTR ERV1 276 484 -2 256 263 113 45 chr4 6432338 6432471 -195895876 - MIR SINE MIR -70 192 51 345 272 103 0 chr4 6432830 6432966 -195895381 - MER31-int LTR ERV1 -1632 3304 3155 2251 100 0 3 chr4 6432971 6433280 -195895067 + AluSx SINE Alu 2 309 -3 485 288 115 9 chr4 6433305 6433531 -195894816 + LTR16C LTR ERVL 134 383 -108 659 247 12 12 chr4 6433735 6433905 -195894442 + LTR16C LTR ERVL 314 483 -8 357 324 29 7 chr4 6434034 6434170 -195894177 - MIR SINE MIR -110 152 14 209 116 0 23 chr4 6434183 6434226 -195894121 + (GGGA)n Simple_repeat Simple_repeat 2 43 0 203 79 26 0 chr4 6434753 6434791 -195893556 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 238 121 35 35 chr4 6434810 6434868 -195893479 + GA-rich Low_complexity Low_complexity 1 58 0 428 331 95 63 chr4 6435311 6435658 -195892689 + L3 LINE CR1 1146 1503 -74 498 330 77 27 chr4 6435820 6436081 -195892266 + MLT1L LTR MaLR 101 374 -241 312 234 0 0 chr4 6437107 6437171 -195891176 - MIR SINE MIR -121 141 78 711 154 18 0 chr4 6437558 6437727 -195890620 + (TCCA)n Simple_repeat Simple_repeat 1 172 0 821 143 25 7 chr4 6437742 6438143 -195890204 + (TCCA)n Simple_repeat Simple_repeat 1 408 0 551 191 17 17 chr4 6438164 6438342 -195890005 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 697 151 30 0 chr4 6438357 6438523 -195889824 + (TCCA)n Simple_repeat Simple_repeat 2 172 0 272 349 84 44 chr4 6438669 6438944 -195889403 - L2 LINE L2 -173 3099 2814 271 282 104 37 chr4 6439979 6440117 -195888230 - MIR SINE MIR -59 149 13 377 82 0 87 chr4 6440688 6440872 -195887475 + (CACCT)n Simple_repeat Simple_repeat 3 170 0 1786 143 0 0 chr4 6440966 6441224 -195887123 - AluSx SINE Alu -11 301 44 2097 109 3 0 chr4 6441263 6441590 -195886757 + AluSx SINE Alu 1 328 0 2154 51 44 7 chr4 6441624 6441933 -195886414 + AluY SINE Alu 1 319 0 1722 144 38 17 chr4 6442705 6442996 -195885351 + AluJo SINE Alu 1 297 -15 182 37 37 0 chr4 6443041 6443068 -195885279 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1648 177 7 7 chr4 6443068 6443367 -195884980 + AluJo SINE Alu 2 300 -12 199 305 63 21 chr4 6443402 6443497 -195884850 + L2 LINE L2 3003 3101 -212 271 303 110 0 chr4 6443580 6443735 -195884612 + L3 LINE CR1 1295 1466 -111 1576 180 68 22 chr4 6443757 6444043 -195884304 - MLT1B LTR MaLR -17 373 66 1133 106 0 150 chr4 6444043 6444270 -195884077 + 7SK RNA RNA 1 193 0 1576 180 68 22 chr4 6444270 6444338 -195884009 - MLT1B LTR MaLR -324 66 3 195 281 42 10 chr4 6444438 6444534 -195883813 + MIR SINE MIR 33 131 -77 329 298 168 8 chr4 6444933 6445064 -195883283 - L1ME4a LINE L1 -17 6104 5953 275 315 120 0 chr4 6445424 6445532 -195882815 - L2 LINE L2 -8 3264 3144 2468 123 31 14 chr4 6446074 6446432 -195881915 - THE1B LTR MaLR 0 364 1 180 0 0 0 chr4 6446434 6446454 -195881893 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 234 0 0 0 chr4 6447082 6447108 -195881239 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 326 200 124 57 chr4 6447128 6447233 -195881114 - L2 LINE L2 -28 3285 3174 367 345 79 0 chr4 6448106 6448271 -195880076 - MIR SINE MIR -37 225 48 242 73 24 0 chr4 6448465 6448506 -195879841 + (CA)n Simple_repeat Simple_repeat 1 42 0 2068 110 7 3 chr4 6449419 6449711 -195878636 - AluSq SINE Alu -20 293 1 1813 164 0 22 chr4 6449720 6450032 -195878315 - AluJb SINE Alu -7 305 1 1982 85 48 4 chr4 6450236 6450532 -195877815 + AluSq SINE Alu 1 308 0 2198 109 0 0 chr4 6451109 6451402 -195876945 + AluSx SINE Alu 1 293 -19 295 253 87 105 chr4 6451609 6451886 -195876461 - L2 LINE L2 -188 3084 2813 258 132 0 73 chr4 6452922 6452990 -195875357 + (CGGGG)n Simple_repeat Simple_repeat 1 63 0 287 243 27 63 chr4 6453144 6453255 -195875092 - L2 LINE L2 -14 3258 3152 228 282 29 68 chr4 6453222 6453325 -195875022 + MIR3 SINE MIR 58 156 -52 * 2260 126 7 0 chr4 6453573 6453883 -195874464 - AluSx SINE Alu 0 312 1 207 125 0 0 chr4 6454711 6454751 -195873596 + (CCCA)n Simple_repeat Simple_repeat 2 41 0 3904 194 48 20 chr4 6454883 6455072 -195873275 + L1MB7 LINE L1 5004 5186 -998 2072 154 0 6 chr4 6455072 6455384 -195872963 + AluJb SINE Alu 1 310 -2 3904 194 48 20 chr4 6455384 6455854 -195872493 + L1MB7 LINE L1 5186 5641 -543 2395 107 0 0 chr4 6455854 6456164 -195872183 + AluSg SINE Alu 1 310 0 3904 194 48 20 chr4 6456164 6456652 -195871695 + L1MB7 LINE L1 5641 6183 -1 2355 97 7 0 chr4 6456655 6456944 -195871403 - AluSx SINE Alu -21 291 1 2247 107 13 0 chr4 6456952 6457250 -195871097 - AluSq SINE Alu -11 302 1 630 246 75 0 chr4 6457265 6457545 -195870802 + L1M4 LINE L1 3030 3330 -2816 547 231 31 0 chr4 6458024 6458154 -195870193 + MLT1C-int LTR MaLR 1238 1371 0 765 199 65 15 chr4 6458154 6458355 -195869992 + MLT1C LTR MaLR 1 211 -256 2353 175 29 13 chr4 6458383 6458839 -195869508 - MLT1C LTR MaLR 0 467 5 2791 194 9 5 chr4 6459129 6459685 -195868662 - L1MB3 LINE L1 0 6183 5626 231 217 0 0 chr4 6460202 6460262 -195868085 + (CA)n Simple_repeat Simple_repeat 1 60 0 2426 89 3 19 chr4 6460943 6461257 -195867090 - AluSq SINE Alu -4 309 1 308 159 0 43 chr4 6462026 6462095 -195866252 - MLT1F1 LTR MaLR 0 567 502 455 310 108 8 chr4 6462095 6462480 -195865867 - L1MB3 LINE L1 -657 5507 5083 410 119 0 0 chr4 6462482 6462541 -195865806 + AluS SINE Alu 2 60 -251 1411 139 5 14 chr4 6462584 6462799 -195865548 + AluSg/x SINE Alu 68 280 -32 1021 104 6 6 chr4 6462801 6462964 -195865383 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 479 309 14 34 chr4 6462964 6463171 -195865176 - L1MB3 LINE L1 -1059 5087 4885 236 307 61 18 chr4 6463297 6463460 -195864887 + L1MC/D LINE L1 5720 5889 -1919 2382 101 3 0 chr4 6463462 6463770 -195864577 + AluSq SINE Alu 1 309 -4 2156 98 7 18 chr4 6463772 6464106 -195864241 + AluSq SINE Alu 1 331 0 376 255 35 41 chr4 6464491 6464636 -195863711 - L1ME4a LINE L1 -12 6109 5966 3829 80 51 0 chr4 6464783 6465310 -195863037 + MER41A LTR ERV1 1 554 0 267 119 24 0 chr4 6465310 6465352 -195862995 + MER41A-int LTR ERV1 1 43 -5903 1924 111 95 47 chr4 6465395 6465858 -195862489 + MER41A-int LTR ERV1 1 310 -5642 7553 141 202 32 chr4 6465879 6467494 -195860853 + MER41A-int LTR ERV1 129 2017 -3929 334 59 59 0 chr4 6467490 6467541 -195860806 + MER41A-int LTR ERV1 2167 2220 -3726 * 3128 128 55 43 chr4 6467537 6467944 -195860403 + MER41A-int LTR ERV1 3355 3755 -4061 2288 112 0 3 chr4 6467944 6468239 -195860108 + AluSg SINE Alu 1 294 -16 3128 128 55 43 chr4 6468239 6468342 -195860005 + MER41A-int LTR ERV1 3755 3855 -3961 2202 126 7 0 chr4 6468342 6468643 -195859704 + AluSq SINE Alu 1 303 -10 3128 128 55 43 chr4 6468643 6468671 -195859676 + MER41A-int LTR ERV1 3855 3881 -3935 2195 122 0 7 chr4 6468671 6468967 -195859380 + AluSx SINE Alu 1 294 -18 3128 128 55 43 chr4 6468967 6469348 -195858999 + MER41A-int LTR ERV1 3881 4417 -3399 11453 85 32 26 chr4 6469382 6470006 -195858341 + MER41A-int LTR ERV1 4191 4810 -1136 1978 167 0 0 chr4 6470006 6470300 -195858047 + AluSx SINE Alu 1 294 -18 11453 85 32 26 chr4 6470300 6471419 -195856928 + MER41A-int LTR ERV1 4810 5944 -2 3792 85 43 0 chr4 6471419 6471950 -195856397 + MER41A LTR ERV1 1 554 0 948 108 6 78 chr4 6472386 6472553 -195855794 + FRAM SINE Alu 1 40 0 815 223 54 0 chr4 6472578 6472762 -195855585 + MER58A DNA MER1_type 3 196 -28 353 274 152 22 chr4 6472976 6473246 -195855101 + LTR16A LTR ERVL 146 450 0 533 300 15 45 chr4 6473269 6473536 -195854811 - L2 LINE L2 -528 2786 2528 2229 95 3 0 chr4 6473627 6473977 -195854370 + AluSx SINE Alu 1 351 0 1229 214 137 51 chr4 6474187 6474677 -195853670 - LTR55 LTR ERV -16 532 1 371 321 70 12 chr4 6474678 6475021 -195853326 + L1 LINE L1 4288 4650 -1496 261 169 31 31 chr4 6475100 6475165 -195853182 + L1ME LINE L1 5714 5778 -343 860 172 0 0 chr4 6475192 6475326 -195853021 + AluJ SINE Alu 3 136 -176 6529 86 1 2 chr4 6475333 6477142 -195851205 + L1PA10 LINE L1 4352 6168 0 195 184 0 0 chr4 6477210 6477248 -195851099 + A-rich Low_complexity Low_complexity 1 38 0 2035 124 3 23 chr4 6477252 6477558 -195850789 + AluSg SINE Alu 1 300 -10 1996 125 45 14 chr4 6477560 6477847 -195850500 + AluSx SINE Alu 1 296 -16 28 29 0 0 chr4 6477847 6477882 -195850465 + AT_rich Low_complexity Low_complexity 1 35 0 1195 160 0 5 chr4 6477882 6478070 -195850277 + AluJ SINE Alu 117 303 -9 225 302 62 10 chr4 6479495 6479591 -195848756 - MLT1K LTR MaLR -346 242 142 205 196 0 22 chr4 6479819 6479865 -195848482 + (CCA)n Simple_repeat Simple_repeat 1 45 0 210 329 31 12 chr4 6480143 6480304 -195848043 + (CAGGG)n Simple_repeat Simple_repeat 5 168 0 1655 114 144 0 chr4 6481060 6481324 -195847023 + AluSx SINE Alu 1 302 0 999 237 58 34 chr4 6481832 6482242 -195846105 + MLT1D LTR MaLR 35 493 -12 284 262 58 29 chr4 6482300 6482403 -195845944 + MIR SINE MIR 47 152 -110 923 218 196 25 chr4 6482556 6482955 -195845392 + MLT1J LTR MaLR 13 479 -32 234 219 0 47 chr4 6484293 6484357 -195843990 + MIR SINE MIR 136 196 -66 1183 266 104 42 chr4 6484358 6484840 -195843507 - MLT1E3 LTR MaLR -112 512 1 2229 74 0 40 chr4 6485841 6486173 -195842174 - AluSx SINE Alu 0 320 1 2061 136 3 3 chr4 6486201 6486509 -195841838 + AluSx SINE Alu 1 308 -4 365 271 83 43 chr4 6486520 6486940 -195841407 - L1MC5 LINE L1 -50 7911 7475 26 64 0 0 chr4 6488070 6488117 -195840230 + GC_rich Low_complexity Low_complexity 1 47 0 272 253 154 19 chr4 6489994 6490225 -195838122 - L1MC5 LINE L1 -421 5821 5674 2019 55 0 19 chr4 6490332 6490589 -195837758 + AluY SINE Alu 45 296 -15 2264 89 3 20 chr4 6490900 6491204 -195837143 - AluSp SINE Alu -5 308 10 874 176 20 7 chr4 6491489 6491637 -195836710 + FRAM SINE Alu 3 152 -24 1641 137 129 0 chr4 6491647 6491910 -195836437 + AluSx SINE Alu 1 297 -15 213 108 0 0 chr4 6491921 6491958 -195836389 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 1884 156 31 0 chr4 6493060 6493349 -195834998 + AluJb SINE Alu 1 298 -14 2420 64 0 17 chr4 6493634 6493929 -195834418 + AluY SINE Alu 1 290 -21 237 33 0 0 chr4 6493930 6493960 -195834387 + (TA)n Simple_repeat Simple_repeat 2 31 0 195 306 124 16 chr4 6494442 6494563 -195833784 - MIR SINE MIR -116 146 13 450 332 142 0 chr4 6494705 6495000 -195833347 + L2 LINE L2 1996 2332 -982 1202 243 57 33 chr4 6495238 6495327 -195833020 - L1MC5 LINE L1 -784 5362 5277 180 0 0 0 chr4 6495327 6495347 -195833000 + (TA)n Simple_repeat Simple_repeat 1 20 0 2375 102 3 13 chr4 6495349 6495663 -195832684 - AluSx SINE Alu -1 311 1 1202 243 57 33 chr4 6495663 6495980 -195832367 - L1MC5 LINE L1 -869 5277 4938 774 32 0 0 chr4 6495980 6496073 -195832274 + (TTTC)n Simple_repeat Simple_repeat 3 95 0 1202 243 57 33 chr4 6496073 6496119 -195832228 - L1MC5 LINE L1 -1208 4938 4895 348 183 175 8 chr4 6497767 6497887 -195830460 + MIR SINE MIR 92 231 -31 332 245 71 65 chr4 6498082 6498166 -195830181 - L1ME4a LINE L1 -1 6120 6038 2339 114 0 0 chr4 6498166 6498473 -195829874 + AluSx SINE Alu 1 307 -5 332 245 71 65 chr4 6498473 6498572 -195829775 - L1ME4a LINE L1 -83 6038 5936 2181 111 43 25 chr4 6500185 6500553 -195827794 - THE1C LTR MaLR 0 375 1 231 289 144 0 chr4 6501445 6501535 -195826812 - MIR SINE MIR -80 182 80 318 209 118 18 chr4 6502568 6502678 -195825669 - MER113 DNA MER1_type? -302 219 99 2348 86 7 0 chr4 6502679 6502969 -195825378 + AluSg SINE Alu 6 297 -13 200 360 27 36 chr4 6503827 6503938 -195824409 + MIR SINE MIR 35 144 -118 282 301 109 65 chr4 6504611 6505013 -195823334 + L2 LINE L2 2810 3229 -43 216 192 19 39 chr4 6505109 6505161 -195823186 - L2 LINE L2 -14 3258 3208 250 286 134 9 chr4 6505411 6505523 -195822824 - MER96 DNA MER1_type? -39 136 11 189 299 41 62 chr4 6506058 6506155 -195822192 + MIR3 SINE MIR 88 182 -26 316 309 158 29 chr4 6506627 6506829 -195821518 - MIR SINE MIR -43 219 3 196 231 0 0 chr4 6507523 6507562 -195820785 + L2 LINE L2 3263 3301 -12 222 362 51 22 chr4 6507670 6507808 -195820539 + MIR3 SINE MIR 5 146 -62 334 220 66 0 chr4 6507879 6507970 -195820377 + MER5A DNA MER1_type 10 106 -83 187 267 287 0 chr4 6507904 6508005 -195820342 - MER5A DNA MER1_type -24 165 36 * 190 332 72 9 chr4 6508410 6508633 -195819714 + L2 LINE L2 2738 2974 -340 211 336 60 0 chr4 6508670 6508786 -195819561 + L2 LINE L2 3141 3263 -9 182 331 83 53 chr4 6508815 6508984 -195819363 + MIR SINE MIR 45 218 -44 1583 202 80 36 chr4 6509292 6509707 -195818640 + MLT1D LTR MaLR 1 433 -72 532 216 16 0 chr4 6509712 6509837 -195818510 - MER47A DNA MER2_type 0 366 240 530 232 0 0 chr4 6509838 6509950 -195818397 - MER47A DNA MER2_type -254 112 1 351 203 0 0 chr4 6509950 6510019 -195818328 + MLT1D LTR MaLR 437 505 0 417 290 36 67 chr4 6511154 6511311 -195817036 + MIR SINE MIR 45 208 -54 2120 114 0 31 chr4 6511311 6511628 -195816719 + AluSx SINE Alu 1 307 -5 417 290 36 67 chr4 6511628 6511664 -195816683 + MIR SINE MIR 208 244 -18 743 263 91 45 chr4 6512135 6512531 -195815816 + MLT1C LTR MaLR 54 467 0 220 246 87 43 chr4 6513538 6513676 -195814671 + L2 LINE L2 2921 3064 -208 205 378 64 13 chr4 6513886 6514042 -195814305 - L3 LINE CR1 -7 1570 1407 254 284 28 57 chr4 6514468 6514609 -195813738 - MIR SINE MIR -90 172 36 944 135 12 0 chr4 6514720 6514890 -195813457 + (TTCA)n Simple_repeat Simple_repeat 2 173 0 321 274 186 0 chr4 6514901 6515003 -195813344 - L2 LINE L2 -15 3257 3137 220 271 82 16 chr4 6515076 6515198 -195813149 - L2 LINE L2 -1469 1845 1716 * 233 241 0 0 chr4 6515192 6515246 -195813101 + L2 LINE L2 3218 3271 -1 201 262 153 38 chr4 6515540 6515723 -195812624 - L2 LINE L2 -411 2903 2700 372 324 33 2 chr4 6516057 6516262 -195812085 + MIR3 SINE MIR 1 259 -3 308 280 136 8 chr4 6516391 6516516 -195811831 - MIR3 SINE MIR -32 176 36 730 254 149 11 chr4 6516522 6516797 -195811550 - MLT1C LTR MaLR -21 446 134 2289 95 0 0 chr4 6516831 6517127 -195811220 - AluSq SINE Alu -17 296 1 337 273 97 48 chr4 6518349 6518514 -195809833 - MIR3 SINE MIR -22 186 14 575 232 53 0 chr4 6520169 6520320 -195808027 - MLT1B LTR MaLR 0 390 232 235 200 0 0 chr4 6520340 6520385 -195807962 + G-rich Low_complexity Low_complexity 1 45 0 206 23 93 0 chr4 6520386 6520429 -195807918 + GA-rich Low_complexity Low_complexity 2 48 0 483 226 82 7 chr4 6520430 6520576 -195807771 - MLT1B LTR MaLR -205 185 29 196 178 22 0 chr4 6520659 6520704 -195807643 + L2 LINE L2 3014 3059 -213 391 296 254 0 chr4 6520998 6521278 -195807069 + L2 LINE L2 2912 3262 -10 188 268 36 0 chr4 6521291 6521347 -195807000 + L2 LINE L2 3207 3264 -8 289 357 56 16 chr4 6522328 6522454 -195805893 - MIR3 SINE MIR -63 145 15 210 310 17 0 chr4 6522462 6522520 -195805827 + (TG)n Simple_repeat Simple_repeat 2 60 0 237 33 0 0 chr4 6522585 6522615 -195805732 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 323 328 156 25 chr4 6522627 6523119 -195805228 - L2 LINE L2 -25 3247 2682 183 325 12 62 chr4 6523584 6523664 -195804683 - MIR SINE MIR -123 139 64 2418 66 0 3 chr4 6524816 6525117 -195803230 + AluY SINE Alu 1 300 -11 386 139 14 0 chr4 6526437 6526509 -195801838 + CT-rich Low_complexity Low_complexity 3 75 0 320 319 21 42 chr4 6528163 6528228 -195800119 - MIR SINE MIR -4 258 193 192 40 0 0 chr4 6528228 6528253 -195800094 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 320 319 21 42 chr4 6528253 6528331 -195800016 - MIR SINE MIR -69 193 118 789 185 13 0 chr4 6528331 6528488 -195799859 + L1MC/D LINE L1 5476 5634 -699 391 275 64 0 chr4 6530946 6531055 -195797292 + MIR SINE MIR 47 162 -100 180 336 96 0 chr4 6531935 6532039 -195796308 - L2 LINE L2 -177 3095 2982 2634 141 62 2 chr4 6534338 6534741 -195793606 + MSTA LTR MaLR 2 428 0 308 250 0 33 chr4 6536610 6536702 -195791645 + HsTC2 DNA Tc2 1 89 -1809 880 317 110 23 chr4 6537319 6537950 -195790397 - L2 LINE L2 -3 3310 2613 2050 126 0 3 chr4 6538884 6539178 -195789169 + AluSx SINE Alu 5 297 -15 1352 198 38 108 chr4 6539196 6539696 -195788651 - MLT1C LTR MaLR -2 465 1 310 331 128 12 chr4 6540341 6540513 -195787834 + MIR SINE MIR 25 216 -46 196 275 12 62 chr4 6540637 6540717 -195787630 - MIR3 SINE MIR -6 202 127 377 258 129 12 chr4 6540898 6541061 -195787286 - L2 LINE L2 -257 3056 2875 931 71 20 45 chr4 6541571 6541894 -195786453 + (TGGA)n Simple_repeat Simple_repeat 1 315 0 297 51 0 0 chr4 6541906 6541945 -195786402 + (TGGA)n Simple_repeat Simple_repeat 1 39 0 224 297 203 7 chr4 6541989 6542127 -195786220 - MIR3 SINE MIR -41 167 3 22 56 0 0 chr4 6542192 6542228 -195786119 + AT_rich Low_complexity Low_complexity 1 36 0 1410 189 79 16 chr4 6542895 6543261 -195785086 - MLT1C LTR MaLR -76 391 3 214 316 13 13 chr4 6543445 6543524 -195784823 - MIR SINE MIR -117 145 67 332 298 0 10 chr4 6543621 6543725 -195784622 - MIR SINE MIR -61 147 45 283 241 60 0 chr4 6543821 6543904 -195784443 + MER81 DNA DNA 27 114 0 372 298 128 30 chr4 6544737 6544972 -195783375 + L2 LINE L2 2906 3163 -109 2261 206 27 2 chr4 6545190 6545628 -195782719 - L1MB5 LINE L1 -8 6166 5718 190 227 68 0 chr4 6545653 6545697 -195782650 - L2 LINE L2 -23 3290 3244 238 264 35 0 chr4 6545798 6545885 -195782462 + MER45 DNA AcHobo 26 115 -1466 309 357 8 16 chr4 6546782 6546911 -195781436 + MIR SINE MIR 17 144 -118 316 248 204 0 chr4 6547065 6547178 -195781169 + MIR SINE MIR 8 143 -119 180 359 39 10 chr4 6548859 6548962 -195779385 - MIR3 SINE MIR -6 202 97 194 283 19 0 chr4 6549080 6549133 -195779214 + MIR SINE MIR 90 143 -65 3144 222 34 4 chr4 6549437 6550262 -195778085 - L1M4 LINE L1 -2885 3261 2412 303 311 0 49 chr4 6550391 6550513 -195777834 + L2 LINE L2 3197 3312 -1 26 30 0 0 chr4 6550532 6550565 -195777782 + AT_rich Low_complexity Low_complexity 1 33 0 604 304 68 27 chr4 6550904 6551124 -195777223 - MIR SINE MIR -21 241 13 461 296 39 82 chr4 6551824 6552030 -195776317 - MIR SINE MIR 0 262 66 2168 113 0 3 chr4 6552036 6552346 -195776001 - AluSq SINE Alu -4 309 1 204 178 0 44 chr4 6555123 6555168 -195773179 + CT-rich Low_complexity Low_complexity 3 45 0 623 225 21 0 chr4 6555169 6555449 -195772898 + (TCCA)n Simple_repeat Simple_repeat 1 285 0 208 231 26 0 chr4 6555468 6555546 -195772801 + (TCCA)n Simple_repeat Simple_repeat 1 80 0 314 279 81 62 chr4 6555659 6555820 -195772527 + L2 LINE L2 3109 3272 0 274 303 107 0 chr4 6555826 6555948 -195772399 - MIR3 SINE MIR -45 163 29 201 265 118 0 chr4 6556434 6556502 -195771845 - MIR3 SINE MIR -41 167 92 238 273 0 0 chr4 6556999 6557054 -195771293 + L2 LINE L2 3208 3262 -10 215 299 51 26 chr4 6557954 6558071 -195770276 + MIR SINE MIR 17 136 -72 186 43 0 0 chr4 6558191 6558214 -195770133 + (GA)n Simple_repeat Simple_repeat 1 23 0 544 278 44 15 chr4 6558870 6559075 -195769272 - MLT1J2 LTR MaLR 0 450 240 553 280 113 27 chr4 6559440 6559769 -195768578 + L2 LINE L2 2828 3184 -129 1103 193 44 139 chr4 6559780 6560189 -195768158 - MLT1A2 LTR MaLR -4 370 1 347 287 130 0 chr4 6560202 6560310 -195768037 + L2 LINE L2 3191 3312 -1 397 278 98 40 chr4 6561740 6561913 -195766434 - MIR SINE MIR -12 250 68 318 257 119 9 chr4 6562190 6562299 -195766048 - L1M4 LINE L1 -3353 2793 2673 1552 204 40 3 chr4 6562322 6562514 -195765833 - AluJo SINE Alu -2 310 102 2030 134 23 7 chr4 6562514 6562821 -195765526 + AluSx SINE Alu 1 312 0 1552 204 40 3 chr4 6562821 6562927 -195765420 - AluJo SINE Alu -210 102 1 504 328 25 20 chr4 6563630 6563892 -195764455 - MIR SINE MIR 0 262 2 2035 105 0 20 chr4 6564062 6564356 -195763991 - AluJb SINE Alu -2 310 23 394 220 0 36 chr4 6564894 6565062 -195763285 + CT-rich Low_complexity Low_complexity 1 162 0 294 377 16 0 chr4 6566419 6566541 -195761806 + MIR SINE MIR 75 198 -64 205 313 47 0 chr4 6567515 6567579 -195760768 + L3 LINE CR1 1263 1329 -248 771 281 51 23 chr4 6567659 6568054 -195760293 + MER115 DNA AcHobo 29 434 -259 529 279 8 0 chr4 6570361 6570490 -195757857 - MIR SINE MIR -39 223 94 517 273 16 0 chr4 6571031 6571159 -195757188 - L2 LINE L2 -1 3271 3142 247 79 26 0 chr4 6572154 6572192 -195756155 + L2 LINE L2 2745 2783 -531 964 281 72 36 chr4 6572202 6572593 -195755754 + L2 LINE L2 2887 3291 -22 270 116 0 0 chr4 6572595 6572638 -195755709 + (TG)n Simple_repeat Simple_repeat 2 44 0 304 295 76 19 chr4 6573757 6573862 -195754485 - MIR SINE MIR -29 233 123 380 198 25 136 chr4 6573896 6574058 -195754289 - L2 LINE L2 0 3313 3170 220 263 18 0 chr4 6574157 6574214 -195754133 + CT-rich Low_complexity Low_complexity 4 61 0 2390 66 3 0 chr4 6574854 6575156 -195753191 - AluY SINE Alu -8 303 1 295 140 0 53 chr4 6577274 6577331 -195751016 - MIR SINE MIR -61 147 94 312 256 17 0 chr4 6577582 6577754 -195750593 + (TG)n Simple_repeat Simple_repeat 1 175 0 323 350 50 7 chr4 6579000 6579147 -195749200 - MIR SINE MIR -61 147 14 586 223 0 0 chr4 6580036 6580157 -195748190 - MIR SINE MIR -62 200 80 2293 262 48 39 chr4 6580747 6581691 -195746656 - L1ME1 LINE L1 -4 6162 5201 2161 123 0 3 chr4 6581691 6582000 -195746347 - AluSc SINE Alu -1 308 1 2293 262 48 39 chr4 6582000 6582120 -195746227 - L1ME1 LINE L1 -965 5201 5084 233 299 188 17 chr4 6583104 6583221 -195745126 - L2 LINE L2 0 3272 3136 255 360 72 0 chr4 6583492 6583631 -195744716 + L2 LINE L2 2608 2756 -558 2342 87 0 0 chr4 6584153 6584464 -195743883 - AluY SINE Alu 0 311 1 2042 90 34 65 chr4 6584635 6584958 -195743389 - AluSq SINE Alu 0 313 1 195 304 0 0 chr4 6585149 6585195 -195743152 + MIR SINE MIR 217 262 0 205 303 130 34 chr4 6585404 6585642 -195742705 + L2 LINE L2 2908 3168 -104 877 157 6 9 chr4 6585746 6586086 -195742261 + (TCCA)n Simple_repeat Simple_repeat 1 338 0 204 296 0 102 chr4 6586109 6586207 -195742140 - L2 LINE L2 0 3272 3185 206 298 0 0 chr4 6586364 6586411 -195741936 + MIR SINE MIR 74 120 -142 317 154 0 0 chr4 6587732 6587784 -195740563 + MLT1L LTR MaLR 22 73 -394 536 304 85 27 chr4 6587911 6588135 -195740212 - MIR SINE MIR -4 258 22 317 273 219 11 chr4 6588292 6588475 -195739872 + MIR SINE MIR 21 241 -21 1783 236 31 5 chr4 6588555 6589000 -195739347 - L1ME1 LINE L1 -5 6161 5705 608 210 105 6 chr4 6588993 6589174 -195739173 - L1MCc LINE L1 -5058 1365 1167 * 1758 176 0 29 chr4 6589248 6589554 -195738793 + AluJo SINE Alu 1 297 -15 829 161 0 0 chr4 6589846 6589983 -195738364 + AluJo SINE Alu 1 137 -175 498 330 77 27 chr4 6590776 6591037 -195737310 + MLT1L LTR MaLR 101 374 -241 312 234 0 0 chr4 6592063 6592127 -195736220 - MIR SINE MIR -121 141 78 196 158 35 0 chr4 6592516 6592573 -195735774 + (TCCA)n Simple_repeat Simple_repeat 4 62 0 667 151 22 17 chr4 6592588 6592767 -195735580 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 374 230 23 0 chr4 6592788 6592962 -195735385 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 244 301 11 0 chr4 6592975 6593068 -195735279 + (TCCA)n Simple_repeat Simple_repeat 1 94 0 529 312 47 58 chr4 6593655 6593998 -195734349 + L2 LINE L2 2932 3270 -2 2086 117 10 0 chr4 6595263 6595553 -195732794 + AluSx SINE Alu 1 293 -19 555 205 18 0 chr4 6595742 6595854 -195732493 - MER81 DNA DNA 0 114 1 195 194 113 32 chr4 6597226 6597288 -195731059 + MIR SINE MIR 34 100 -108 447 332 154 14 chr4 6597726 6598296 -195730051 + L1ME4a LINE L1 5347 5996 -125 2130 116 0 25 chr4 6598689 6599008 -195729339 - AluSx SINE Alu -1 311 1 308 363 137 0 chr4 6599849 6600039 -195728308 - MIR SINE MIR 0 262 47 396 302 171 19 chr4 6600688 6600882 -195727465 - MIR SINE MIR 0 262 34 2231 79 3 55 chr4 6600882 6601212 -195727135 - AluSq SINE Alu 0 313 1 210 154 0 0 chr4 6601880 6601919 -195726428 + A-rich Low_complexity Low_complexity 1 39 0 2048 132 3 16 chr4 6602037 6602347 -195726000 + AluSx SINE Alu 1 306 -6 237 65 0 0 chr4 6603571 6603602 -195724745 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 259 275 154 0 chr4 6604020 6604111 -195724236 + L2 LINE L2 3168 3272 0 197 343 14 0 chr4 6604111 6604181 -195724166 - MIR SINE MIR -129 133 63 180 380 80 20 chr4 6604373 6604523 -195723824 + MIR SINE MIR 77 235 -27 472 243 69 23 chr4 6604872 6605045 -195723302 + L1MB7 LINE L1 5943 6123 -61 250 254 34 68 chr4 6606863 6606981 -195721366 + L2 LINE L2 3158 3271 -1 618 236 23 23 chr4 6607311 6607485 -195720862 + MLT1H LTR MaLR 1 174 -375 585 176 17 17 chr4 6607600 6607719 -195720628 + MLT1H LTR MaLR 431 549 0 3574 139 13 8 chr4 6607883 6608482 -195719865 + LTR10E LTR ERV1 1 602 -31 659 245 13 0 chr4 6608656 6608811 -195719536 - MIR SINE MIR -95 167 11 868 234 92 77 chr4 6610629 6610954 -195717393 - MER102a DNA MER1_type 0 330 1 369 351 48 0 chr4 6611203 6611368 -195716979 + MIR SINE MIR 20 192 -70 290 333 25 44 chr4 6611422 6611626 -195716721 + L3 LINE CR1 1272 1471 -106 2115 103 17 0 chr4 6612537 6612828 -195715519 + AluSx SINE Alu 1 296 -16 213 319 138 11 chr4 6614892 6615080 -195713267 + MIR SINE MIR 36 247 -15 390 279 41 7 chr4 6615478 6615625 -195712722 - L2 LINE L2 0 3272 3121 405 291 159 28 chr4 6616150 6616470 -195711877 + L2 LINE L2 2259 2620 -694 542 284 157 25 chr4 6616510 6616904 -195711443 + L2 LINE L2 2804 3249 -64 1945 144 0 38 chr4 6618222 6618542 -195709805 - AluSx SINE Alu -4 308 1 1968 144 0 13 chr4 6619139 6619444 -195708903 + AluJb SINE Alu 1 301 -11 3087 102 61 5 chr4 6621604 6622044 -195706303 + MER4C LTR ERV1 1 465 0 1818 87 30 26 chr4 6622504 6622770 -195705577 + AluSx SINE Alu 36 302 -10 222 274 38 29 chr4 6623331 6623435 -195704912 - MIR SINE MIR -23 185 75 1233 141 34 43 chr4 6624204 6624392 -195703955 + MER2 DNA MER2_type 2 189 -156 1894 176 71 0 chr4 6624392 6624716 -195703631 + MER7A DNA MER2_type 1 345 -1 1233 141 34 43 chr4 6624716 6624761 -195703586 + MER2 DNA MER2_type 189 233 -112 705 119 0 0 chr4 6624765 6624866 -195703481 + AluSg/x SINE Alu 204 304 -6 665 167 0 18 chr4 6624866 6624980 -195703367 + MER2 DNA MER2_type 234 345 0 301 241 138 0 chr4 6625390 6625477 -195702870 - L2 LINE L2 -8 3264 3166 1892 119 10 42 chr4 6625568 6625879 -195702468 + AluSx SINE Alu 1 301 -11 1235 129 0 0 chr4 6625879 6626057 -195702290 + AluSg/x SINE Alu 134 311 -1 470 265 54 58 chr4 6626062 6626356 -195701991 + L1MC5 LINE L1 7238 7530 -431 1754 182 6 88 chr4 6626358 6626772 -195701575 + L1MB3 LINE L1 5744 6190 7 2252 99 0 7 chr4 6626772 6627074 -195701273 + AluSq SINE Alu 1 300 -13 1754 182 6 88 chr4 6627074 6627104 -195701243 + L1MB3 LINE L1 6190 6150 -33 383 67 34 157 chr4 6627104 6627193 -195701154 + MADE1 DNA Mariner 2 79 -1 1754 182 6 88 chr4 6627193 6627224 -195701123 + L1MB3 LINE L1 6149 6181 -2 441 251 23 69 chr4 6627224 6627399 -195700948 + L1MC5 LINE L1 7533 7699 -262 216 239 0 0 chr4 6628107 6628153 -195700194 + (CCG)n Simple_repeat Simple_repeat 2 47 0 568 195 86 29 chr4 6628231 6628405 -195699942 - MER96B DNA MER1_type? -233 184 1 804 249 66 8 chr4 6630072 6630313 -195698034 + MER112 DNA MER1_type 2 256 0 972 203 30 5 chr4 6630516 6630718 -195697629 - MIR SINE MIR -42 220 14 316 311 142 16 chr4 6631919 6632109 -195696238 - MIR SINE MIR -48 214 1 360 360 27 0 chr4 6632646 6632796 -195695551 + MIR SINE MIR 48 201 -61 1046 253 88 10 chr4 6633124 6633552 -195694795 + MLT1D LTR MaLR 3 505 0 2265 75 7 0 chr4 6633648 6633943 -195694404 - AluSp SINE Alu -16 297 1 282 268 10 21 chr4 6633943 6634040 -195694307 + MIR SINE MIR 167 262 0 213 275 43 0 chr4 6634323 6634392 -195693955 + MIR SINE MIR 101 172 -90 1822 168 29 9 chr4 6634782 6635128 -195693219 + MLT1B LTR MaLR 1 353 -37 846 147 8 0 chr4 6635133 6635262 -195693085 + MER6 DNA MER2_type 32 161 -704 765 273 84 12 chr4 6635278 6635600 -195692747 - MLT1D LTR MaLR -76 429 85 * 2067 115 81 56 chr4 6635579 6635909 -195692438 + MER6 DNA MER2_type 188 508 -357 2058 147 0 0 chr4 6635909 6636221 -195692126 + AluSx SINE Alu 1 312 0 2067 115 81 56 chr4 6636221 6636298 -195692049 + MER6 DNA MER2_type 508 865 0 714 269 145 31 chr4 6636762 6637040 -195691307 - LTR33A LTR ERVL -18 505 260 1411 281 36 25 chr4 6637040 6637478 -195690869 + LTR47B LTR ERVL 1 443 0 714 269 145 31 chr4 6637478 6637648 -195690699 - LTR33A LTR ERVL -263 260 6 449 322 39 30 chr4 6638578 6638777 -195689570 - MIR SINE MIR -54 208 9 2914 212 66 29 chr4 6639243 6639927 -195688420 + MER67C LTR ERV1 2 710 0 567 297 128 0 chr4 6640012 6640207 -195688140 + MIR SINE MIR 21 240 -22 284 333 0 0 chr4 6641662 6641743 -195686604 - MER81 DNA DNA -16 98 18 286 298 53 0 chr4 6644925 6645019 -195683328 - L2 LINE L2 -1 3312 3214 269 279 0 0 chr4 6645896 6645975 -195682372 + A-rich Low_complexity Low_complexity 1 79 0 1482 116 36 18 chr4 6646401 6646625 -195681722 - MER30 DNA MER1_type 0 230 3 425 313 55 0 chr4 6646979 6647107 -195681240 - MIR3 SINE MIR -6 202 68 220 277 189 14 chr4 6648227 6648375 -195679972 - L3 LINE CR1 -216 1361 1188 227 289 132 26 chr4 6648533 6648647 -195679700 - L2 LINE L2 -4 3268 3143 367 244 0 0 chr4 6648779 6648861 -195679486 + MIR SINE MIR 73 154 -108 628 314 51 8 chr4 6649488 6649743 -195678604 - L1ME3 LINE L1 -1 6161 5896 425 168 179 0 chr4 6649985 6650080 -195678267 - MER81 DNA DNA -1 113 2 694 257 38 16 chr4 6650429 6650612 -195677735 - MER5A DNA MER1_type 0 189 3 1910 103 57 0 chr4 6650793 6651075 -195677272 + AluSx SINE Alu 1 298 -14 290 181 14 14 chr4 6651137 6651209 -195677138 - L2 LINE L2 -277 2995 2924 195 270 79 0 chr4 6651292 6651355 -195676992 - L2 LINE L2 -556 2758 2691 347 288 183 0 chr4 6651412 6651565 -195676782 + MIR SINE MIR 79 259 -3 198 368 11 0 chr4 6651706 6651793 -195676554 + MIR SINE MIR 51 138 -124 478 238 13 64 chr4 6651994 6652180 -195676167 + MIR SINE MIR 5 181 -67 187 244 0 0 chr4 6652181 6652222 -195676125 - L2 LINE L2 -5 3267 3227 444 51 0 0 chr4 6652292 6652351 -195675996 + (CAAAA)n Simple_repeat Simple_repeat 4 62 0 538 304 134 5 chr4 6653114 6653331 -195675016 - MIR SINE MIR 0 262 18 738 278 52 0 chr4 6653837 6654031 -195674316 - MIR SINE MIR -51 211 8 1689 170 46 51 chr4 6654093 6654166 -195674181 + MLT2D LTR ERVL 3 75 -339 1926 129 4 0 chr4 6654166 6654466 -195673881 + AluSx SINE Alu 5 305 0 1689 170 46 51 chr4 6654466 6654785 -195673562 + MLT2D LTR ERVL 75 394 -20 531 249 103 12 chr4 6654852 6655017 -195673330 + MIR SINE MIR 73 252 -10 452 327 12 6 chr4 6660895 6661060 -195667287 - MIR3 SINE MIR -39 169 4 190 361 83 8 chr4 6661226 6661359 -195666988 - MIR SINE MIR -7 255 113 303 333 49 24 chr4 6661498 6661621 -195666726 + L2 LINE L2 3145 3270 -2 442 312 91 15 chr4 6662195 6662394 -195665953 - MIR SINE MIR -33 229 16 473 306 47 58 chr4 6663625 6663968 -195664379 + L2 LINE L2 2932 3270 -2 2057 117 10 0 chr4 6665233 6665523 -195662824 + AluSx SINE Alu 1 293 -19 547 205 18 0 chr4 6665712 6665824 -195662523 - MER81 DNA DNA 0 114 1 213 177 113 32 chr4 6667196 6667258 -195661089 + MIR SINE MIR 34 100 -108 498 337 150 13 chr4 6667654 6668266 -195660081 + L1ME4a LINE L1 5301 5996 -125 2098 110 0 25 chr4 6668659 6668978 -195659369 - AluSx SINE Alu -1 311 1 264 363 137 0 chr4 6669819 6670009 -195658338 - MIR SINE MIR 0 262 47 356 278 189 22 chr4 6670683 6670852 -195657495 - MIR SINE MIR -26 236 34 2207 79 3 55 chr4 6670852 6671182 -195657165 - AluSq SINE Alu 0 313 1 210 154 0 0 chr4 6671850 6671889 -195656458 + A-rich Low_complexity Low_complexity 1 39 0 2011 132 3 16 chr4 6672007 6672317 -195656030 + AluSx SINE Alu 1 306 -6 237 65 0 0 chr4 6673541 6673572 -195654775 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 243 275 154 0 chr4 6673990 6674081 -195654266 + L2 LINE L2 3168 3272 0 183 343 14 0 chr4 6674081 6674151 -195654196 - MIR SINE MIR -129 133 63 472 243 69 23 chr4 6674842 6675015 -195653332 + L1MB7 LINE L1 5943 6123 -61 250 254 34 68 chr4 6676833 6676951 -195651396 + L2 LINE L2 3158 3271 -1 618 236 23 23 chr4 6677281 6677455 -195650892 + MLT1H LTR MaLR 1 174 -375 585 176 17 17 chr4 6677570 6677689 -195650658 + MLT1H LTR MaLR 431 549 0 3574 139 13 8 chr4 6677853 6678452 -195649895 + LTR10E LTR ERV1 1 602 -31 659 245 13 0 chr4 6678626 6678781 -195649566 - MIR SINE MIR -95 167 11 868 234 92 77 chr4 6680599 6680924 -195647423 - MER102a DNA MER1_type 0 330 1 369 351 48 0 chr4 6681173 6681338 -195647009 + MIR SINE MIR 20 192 -70 290 333 25 44 chr4 6681392 6681596 -195646751 + L3 LINE CR1 1272 1471 -106 2115 103 17 0 chr4 6682507 6682798 -195645549 + AluSx SINE Alu 1 296 -16 213 319 138 11 chr4 6684862 6685050 -195643297 + MIR SINE MIR 36 247 -15 390 279 41 7 chr4 6685448 6685595 -195642752 - L2 LINE L2 0 3272 3121 405 291 159 28 chr4 6686120 6686440 -195641907 + L2 LINE L2 2259 2620 -694 542 284 157 25 chr4 6686480 6686874 -195641473 + L2 LINE L2 2804 3249 -64 1945 144 0 38 chr4 6688192 6688512 -195639835 - AluSx SINE Alu -4 308 1 1968 144 0 13 chr4 6689109 6689414 -195638933 + AluJb SINE Alu 1 301 -11 3087 102 61 5 chr4 6691574 6692014 -195636333 + MER4C LTR ERV1 1 465 0 1818 87 30 26 chr4 6692474 6692740 -195635607 + AluSx SINE Alu 36 302 -10 222 274 38 29 chr4 6693301 6693405 -195634942 - MIR SINE MIR -23 185 75 1263 142 34 39 chr4 6694174 6694361 -195633986 + MER2 DNA MER2_type 2 189 -156 1894 176 71 0 chr4 6694361 6694685 -195633662 + MER7A DNA MER2_type 1 345 -1 1263 142 34 39 chr4 6694685 6694730 -195633617 + MER2 DNA MER2_type 189 233 -112 705 119 0 0 chr4 6694734 6694835 -195633512 + AluSg/x SINE Alu 204 304 -6 665 167 0 18 chr4 6694835 6694949 -195633398 + MER2 DNA MER2_type 234 345 0 301 241 138 0 chr4 6695359 6695446 -195632901 - L2 LINE L2 -8 3264 3166 2182 110 3 16 chr4 6695537 6695854 -195632493 + AluSq SINE Alu 1 313 0 237 333 86 17 chr4 6695951 6696125 -195632222 + MIR SINE MIR 7 192 -70 2172 116 36 39 chr4 6696296 6696658 -195631689 - MER46B DNA MER2_type 0 236 1 1979 198 50 24 chr4 6696729 6697116 -195631231 + MLT1C LTR MaLR 1 403 -64 1989 142 13 3 chr4 6697116 6697425 -195630922 - AluJo SINE Alu 0 312 1 1979 198 50 24 chr4 6697425 6697492 -195630855 + MLT1C LTR MaLR 403 467 0 380 220 122 114 chr4 6697572 6697755 -195630592 + Charlie8 DNA MER1_type 244 431 -1986 1585 116 0 0 chr4 6697755 6697979 -195630368 + AluSg/x SINE Alu 80 303 -7 380 220 122 114 chr4 6697979 6698040 -195630307 + Charlie8 DNA MER1_type 431 490 -1927 591 175 0 0 chr4 6698902 6699022 -195629325 + (TGGA)n Simple_repeat Simple_repeat 3 122 0 204 67 0 0 chr4 6699441 6699471 -195628876 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 2085 128 60 31 chr4 6700084 6700437 -195627910 + THE1B LTR MaLR 1 363 -1 306 0 0 0 chr4 6700628 6700662 -195627685 + (CA)n Simple_repeat Simple_repeat 2 35 0 343 292 83 8 chr4 6700920 6701040 -195627307 - MIR SINE MIR -55 207 79 391 264 104 0 chr4 6701535 6701641 -195626706 + MIR SINE MIR 74 190 -72 1550 172 15 7 chr4 6702166 6702439 -195625908 - AluJb SINE Alu -27 285 11 563 271 21 23 chr4 6702439 6702630 -195625717 + L1MC4a LINE L1 5714 5819 -355 2302 93 0 0 chr4 6702769 6703069 -195625278 + AluSx SINE Alu 1 300 -12 2160 112 3 3 chr4 6703684 6703989 -195624358 + AluSp SINE Alu 1 305 -8 279 287 33 97 chr4 6704006 6704306 -195624041 - L1ME4a LINE L1 -205 5916 5636 252 0 0 0 chr4 6704615 6704643 -195623704 + (A)n Simple_repeat Simple_repeat 1 28 0 183 80 0 0 chr4 6704947 6704972 -195623375 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 328 324 155 16 chr4 6705600 6706161 -195622186 + L2 LINE L2 1762 2400 -914 1429 242 92 9 chr4 6706309 6706734 -195621613 + MLT1C LTR MaLR 8 467 0 358 327 39 54 chr4 6706892 6707097 -195621250 + MIR SINE MIR 51 252 -10 356 245 117 53 chr4 6707740 6707928 -195620419 - L2 LINE L2 -1 3312 3113 639 269 91 65 chr4 6708593 6708991 -195619356 + MLT1K LTR MaLR 169 576 -12 219 255 134 33 chr4 6709091 6709254 -195619093 - MIR3 SINE MIR -69 193 15 1344 206 73 42 chr4 6709433 6709606 -195618741 + MLT1C LTR MaLR 1 167 -300 2227 112 0 0 chr4 6709606 6709893 -195618454 + AluSx SINE Alu 19 305 -7 1344 206 73 42 chr4 6709893 6710170 -195618177 + MLT1C LTR MaLR 167 465 -2 375 276 83 47 chr4 6711100 6711292 -195617055 - MIR SINE MIR -58 204 6 222 365 47 31 chr4 6711498 6711690 -195616657 - L3 LINE CR1 -21 1556 1362 199 310 180 0 chr4 6712720 6712820 -195615527 + L2 LINE L2 2925 3042 -230 1921 149 40 7 chr4 6714359 6714661 -195613686 + AluJb SINE Alu 1 312 0 308 172 20 30 chr4 6714665 6714764 -195613583 + GA-rich Low_complexity Low_complexity 3 100 0 625 176 12 24 chr4 6714792 6714962 -195613385 + GA-rich Low_complexity Low_complexity 3 170 0 339 130 0 0 chr4 6714981 6715035 -195613312 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 306 303 20 0 chr4 6715320 6715419 -195612928 - L1ME LINE L1 -430 5691 5591 579 286 83 43 chr4 6715435 6715784 -195612563 - L2 LINE L2 -26 3287 2925 278 330 95 5 chr4 6715856 6716056 -195612291 - L1ME LINE L1 -2336 5472 5255 2402 94 73 52 chr4 6716332 6716656 -195611691 - Tigger4(Zombi) DNA MER2_type 0 2731 2394 1585 204 18 0 chr4 6716656 6716940 -195611407 - AluJo SINE Alu -19 293 5 2402 94 73 52 chr4 6716940 6717042 -195611305 - Tigger4(Zombi) DNA MER2_type -337 2394 2296 1301 158 54 4 chr4 6717043 6717284 -195611063 - Tigger4(Zombi) DNA MER2_type -2477 254 2 2226 113 0 7 chr4 6717797 6718090 -195610257 + AluSq SINE Alu 2 292 -21 207 139 0 0 chr4 6718090 6718126 -195610221 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 * 1121 95 17 20 chr4 6718120 6718416 -195609931 + (GAAA)n Simple_repeat Simple_repeat 1 296 0 698 260 65 29 chr4 6718433 6718710 -195609637 - L1ME3 LINE L1 -133 6098 5812 1092 289 68 50 chr4 6718762 6719516 -195608831 - L1ME3 LINE L1 -4064 2332 1566 297 241 23 0 chr4 6719541 6719628 -195608719 - L1ME LINE L1 -649 5590 5502 4806 261 82 29 chr4 6719770 6720887 -195607460 - L1MB7 LINE L1 -75 6109 5052 185 0 40 0 chr4 6720887 6720912 -195607435 + (TG)n Simple_repeat Simple_repeat 2 27 0 4806 261 82 29 chr4 6720912 6721232 -195607115 - L1MB7 LINE L1 -1132 5052 4750 2228 99 6 51 chr4 6721232 6721545 -195606802 + AluSx SINE Alu 1 299 -13 4806 261 82 29 chr4 6721545 6721906 -195606441 - L1MB7 LINE L1 -1434 4750 4409 1402 196 58 52 chr4 6721906 6722269 -195606078 + MLT1A1 LTR MaLR 1 365 0 4806 261 82 29 chr4 6722269 6722346 -195606001 - L1MB7 LINE L1 -1775 4409 4338 2299 70 0 0 chr4 6722346 6722618 -195605729 - AluY SINE Alu -1 310 39 185 0 40 0 chr4 6722624 6722649 -195605698 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 4806 261 82 29 chr4 6722649 6723758 -195604589 - L1MB7 LINE L1 -1850 4334 2957 1162 262 115 9 chr4 6723792 6724243 -195604104 - L1MB7 LINE L1 -3464 2682 2184 190 286 0 0 chr4 6724973 6725022 -195603325 + L2 LINE L2 3239 3287 -26 341 93 19 0 chr4 6726142 6726196 -195602151 + (TC)n Simple_repeat Simple_repeat 1 55 0 2140 156 9 69 chr4 6727003 6727438 -195600909 + MLT2D LTR ERVL 1 409 -5 223 297 22 22 chr4 6727441 6727532 -195600815 + MIR SINE MIR 106 196 -66 2482 173 34 30 chr4 6728303 6728750 -195599597 + L1MC3 LINE L1 6363 6814 -971 2478 73 0 3 chr4 6728750 6729051 -195599296 - AluY SINE Alu -4 307 8 2482 173 34 30 chr4 6729051 6729107 -195599240 + L1MC3 LINE L1 6814 6868 -917 1940 169 67 3 chr4 6729731 6730092 -195598255 + MLT1B LTR MaLR 7 390 0 220 274 38 28 chr4 6730092 6730198 -195598149 + MIR3 SINE MIR 91 197 -11 394 298 66 11 chr4 6730258 6730439 -195597908 - MIR SINE MIR -32 230 40 205 67 0 111 chr4 6730500 6730545 -195597802 + (CCCCAG)n Simple_repeat Simple_repeat 3 42 0 347 306 51 51 chr4 6731129 6731325 -195597022 - MIR SINE MIR -57 205 10 1135 118 0 12 chr4 6731539 6731708 -195596639 + MER4B LTR ERV1 3 169 -441 784 280 168 6 chr4 6731724 6732088 -195596259 + MER57B LTR ERV1 12 434 0 257 301 48 10 chr4 6732088 6732191 -195596156 - MIR SINE MIR -115 147 41 312 177 333 0 chr4 6732769 6732865 -195595482 - MER5A DNA MER1_type -22 167 40 277 295 69 29 chr4 6732949 6733122 -195595225 - MER5A DNA MER1_type -3 186 7 333 228 76 0 chr4 6733158 6733250 -195595097 - MIR SINE MIR -91 171 73 355 312 40 29 chr4 6733388 6733561 -195594786 + L2 LINE L2 3139 3313 0 440 344 36 0 chr4 6733581 6733773 -195594574 - MIR SINE MIR -10 252 54 300 327 156 4 chr4 6733765 6734028 -195594319 - L2 LINE L2 -1121 2193 1891 * 2162 111 33 13 chr4 6734752 6735058 -195593289 + AluSx SINE Alu 1 312 0 254 257 114 0 chr4 6735111 6735216 -195593131 - L2 LINE L2 -1 3271 3155 182 311 97 10 chr4 6736358 6736461 -195591886 - L2 LINE L2 -85 3228 3117 857 176 35 0 chr4 6736569 6736739 -195591608 - MER45A DNA AcHobo 0 178 3 8744 40 2 7 chr4 6736831 6737907 -195590440 - MER11C LTR ERVK 0 1071 1 753 287 163 23 chr4 6738415 6738858 -195589489 + MLT1D LTR MaLR 1 505 0 2343 82 6 19 chr4 6738887 6739204 -195589143 + AluSp SINE Alu 1 313 0 299 327 8 9 chr4 6739412 6739533 -195588814 - MIR SINE MIR -70 138 30 341 317 35 64 chr4 6739927 6740129 -195588218 + L1ME LINE L1 5592 5787 -334 206 330 32 0 chr4 6740446 6740540 -195587807 + MIR SINE MIR 154 250 -12 2331 109 3 0 chr4 6740546 6740848 -195587499 + AluSx SINE Alu 1 303 -9 236 175 0 0 chr4 6741099 6741139 -195587208 + L1ME4a LINE L1 5725 5764 -357 496 281 36 12 chr4 6741353 6741520 -195586827 - Charlie8 DNA MER1_type -2246 171 1 218 197 15 45 chr4 6741582 6741648 -195586699 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 1954 127 67 0 chr4 6741693 6741976 -195586371 + AluSx SINE Alu 1 302 -10 939 251 8 16 chr4 6742398 6742641 -195585706 + MIR SINE MIR 21 261 -1 1806 170 3 13 chr4 6743169 6743475 -195584872 + AluJo SINE Alu 1 303 -9 208 293 0 0 chr4 6743680 6743738 -195584609 + MIR SINE MIR 19 76 -132 240 196 92 2 chr4 6744587 6744664 -195583683 - MIR SINE MIR -63 145 63 203 204 37 0 chr4 6745166 6745220 -195583127 + (CA)n Simple_repeat Simple_repeat 2 57 0 444 268 150 0 chr4 6746155 6746308 -195582039 + MER5B DNA MER1_type 3 178 0 192 294 88 0 chr4 6746377 6746479 -195581868 - MIR SINE MIR -65 143 33 242 337 47 0 chr4 6746542 6746628 -195581719 + L2 LINE L2 3143 3232 -40 2108 138 0 3 chr4 6748320 6748631 -195579716 + AluJb SINE Alu 1 310 -2 280 216 72 36 chr4 6748693 6748804 -195579543 - MIR3 SINE MIR -7 201 87 2357 79 3 25 chr4 6750085 6750400 -195577947 + AluY SINE Alu 1 308 -3 1961 157 3 0 chr4 6750541 6750841 -195577506 - AluJo SINE Alu -11 301 1 211 224 0 35 chr4 6750841 6750899 -195577448 - MIR SINE MIR -101 161 106 337 264 33 137 chr4 6750949 6751075 -195577272 + L1ME4a LINE L1 5945 6048 -73 1719 149 39 62 chr4 6751075 6751232 -195577115 - AluJb SINE Alu -10 302 154 2044 116 42 3 chr4 6751232 6751517 -195576830 - AluSx SINE Alu -16 296 1 1719 149 39 62 chr4 6751517 6751668 -195576679 - AluJb SINE Alu -158 154 1 337 264 33 137 chr4 6751668 6751723 -195576624 + L1ME4a LINE L1 6048 6107 -14 200 323 0 0 chr4 6751846 6751908 -195576439 - MIR SINE MIR -119 143 82 2389 79 3 10 chr4 6752102 6752407 -195575940 - AluSp SINE Alu -10 303 1 1686 173 8 4 chr4 6755003 6755269 -195573078 - AluJb SINE Alu -45 267 1 1178 150 0 11 chr4 6755316 6755503 -195572844 + AluSg/x SINE Alu 120 304 -6 244 281 34 22 chr4 6755516 6755605 -195572742 - L1ME4a LINE L1 -69 6052 5963 212 281 22 45 chr4 6755663 6755721 -195572626 + MIR SINE MIR 106 163 -99 1979 147 0 26 chr4 6755721 6756033 -195572314 + AluJo SINE Alu 1 304 -8 212 281 22 45 chr4 6756033 6756063 -195572284 + MIR SINE MIR 163 192 -70 278 238 188 0 chr4 6756163 6756264 -195572083 - MIR SINE MIR -55 153 34 2345 103 0 6 chr4 6756525 6756836 -195571511 - AluSx SINE Alu -3 309 1 2048 132 26 3 chr4 6756852 6757156 -195571191 - AluSx SINE Alu -1 311 1 1388 141 103 4 chr4 6757851 6758093 -195570254 - AluJo SINE Alu -10 302 37 391 265 99 88 chr4 6758120 6758403 -195569944 - L1MC5 LINE L1 -37 7924 7639 1814 142 7 10 chr4 6758919 6759215 -195569132 - AluJb SINE Alu -4 308 14 297 240 91 50 chr4 6759571 6759692 -195568655 - MIR SINE MIR -117 145 20 206 333 15 0 chr4 6760337 6760403 -195567944 + L2 LINE L2 3242 3308 -5 2227 156 59 45 chr4 6760562 6760793 -195567554 + MSTA LTR MaLR 1 242 -186 2268 99 0 0 chr4 6760793 6761087 -195567260 + AluSp SINE Alu 1 294 -19 2227 156 59 45 chr4 6761087 6761277 -195567070 + MSTA LTR MaLR 242 428 0 2455 93 100 28 chr4 6761585 6761984 -195566363 - MSTA LTR MaLR 0 428 1 2769 140 56 22 chr4 6764339 6764474 -195563873 + MER4C LTR ERV1 1 130 -335 1474 138 109 4 chr4 6764474 6764749 -195563598 + AluJb SINE Alu 1 304 -8 2769 140 56 22 chr4 6764749 6765063 -195563284 + MER4C LTR ERV1 130 465 0 360 301 48 14 chr4 6765071 6765217 -195563130 - MIR SINE MIR -56 206 56 2151 87 7 3 chr4 6765244 6765533 -195562814 - AluSx SINE Alu -20 292 3 578 240 157 23 chr4 6765583 6765800 -195562547 + MIR SINE MIR 17 262 0 380 199 202 17 chr4 6766184 6766319 -195562028 + AluSq SINE Alu 107 255 -48 1351 172 75 4 chr4 6766382 6766650 -195561697 + AluJo SINE Alu 2 288 -24 6969 131 38 26 chr4 6766652 6766861 -195561486 + HSMAR2 DNA Mariner 45 250 -1052 2215 100 0 10 chr4 6766861 6767162 -195561185 - AluSc SINE Alu -11 298 1 6969 131 38 26 chr4 6767162 6768195 -195560152 + HSMAR2 DNA Mariner 250 1301 -1 195 220 0 0 chr4 6769624 6769674 -195558673 + (CACG)n Simple_repeat Simple_repeat 2 51 0 256 250 97 0 chr4 6771759 6771831 -195556516 - L2 LINE L2 -1 3312 3234 253 469 40 6 chr4 6773790 6773965 -195554382 + MER5A DNA MER1_type 9 189 0 313 531 5 5 chr4 6774488 6774682 -195553665 - AluSx SINE Alu -119 183 13 613 414 13 4 chr4 6775574 6775806 -195552541 + AluSp SINE Alu 2 235 -78 630 405 9 4 chr4 6778264 6778496 -195549851 + AluSg SINE Alu 64 296 -14 23 0 0 0 chr4 6778548 6778571 -195549776 + GC_rich Low_complexity Low_complexity 1 23 0 249 486 0 7 chr4 6778717 6778857 -195549490 - L1PA8 LINE L1 -23 6149 6011 435 385 29 15 chr4 6779798 6780003 -195548344 - SVA Other Other -1045 341 134 198 0 0 0 chr4 6780100 6780122 -195548225 + (TAA)n Simple_repeat Simple_repeat 2 23 0 308 381 48 0 chr4 6780189 6780315 -195548032 + AluSq/x SINE Alu 2 133 -169 27 0 0 0 chr4 6781573 6781600 -195546747 + AT_rich Low_complexity Low_complexity 1 27 0 198 0 0 0 chr4 6782126 6782148 -195546199 + (CCG)n Simple_repeat Simple_repeat 2 23 0 728 343 88 62 chr4 6782566 6783167 -195545180 + L1M4 LINE L1 3676 4292 -1854 454 433 5 23 chr4 6783190 6783554 -195544793 + L1PA15 LINE L1 5807 6155 0 23 0 0 0 chr4 6783677 6783700 -195544647 + AT_rich Low_complexity Low_complexity 1 23 0 502 461 11 7 chr4 6783767 6784047 -195544300 - AluSq SINE Alu -30 283 3 430 307 20 0 chr4 6785652 6785753 -195542594 - SVA Other Other -1091 295 193 376 373 75 0 chr4 6785753 6785914 -195542433 + FAM SINE Alu 1 173 -2 344 493 11 14 chr4 6786020 6786298 -195542049 - AluSc SINE Alu -20 279 3 565 384 11 0 chr4 6787199 6787376 -195540971 - SVA Other Other -1076 310 132 246 271 42 0 chr4 6789188 6789284 -195539063 - MIR SINE MIR -134 128 29 181 405 100 5 chr4 6790402 6790622 -195537725 + L2 LINE L2 2470 2710 -604 229 294 147 10 chr4 6790721 6790823 -195537524 + L2 LINE L2 2947 3062 -251 199 196 22 43 chr4 6790932 6790978 -195537369 - MIR SINE MIR -216 46 2 188 283 50 17 chr4 6791088 6791148 -195537199 - MER5A DNA MER1_type 0 189 128 324 354 73 6 chr4 6791574 6791738 -195536609 - MIR SINE MIR -78 184 10 2000 79 0 18 chr4 6793677 6793954 -195534393 + AluY SINE Alu 27 298 -13 2276 73 0 16 chr4 6794425 6794738 -195533609 - AluSg SINE Alu -2 308 1 1474 185 10 27 chr4 6794873 6795165 -195533182 + AluJb SINE Alu 1 287 -25 319 280 110 8 chr4 6795897 6796015 -195532332 + L2 LINE L2 3143 3272 0 191 275 0 0 chr4 6796047 6796087 -195532260 - L2 LINE L2 -12 3301 3262 2293 78 0 10 chr4 6796538 6796834 -195531513 - AluSg SINE Alu -17 293 1 2306 93 0 0 chr4 6797235 6797535 -195530812 - AluSx SINE Alu -12 300 1 321 288 117 0 chr4 6797675 6797786 -195530561 + MIR3 SINE MIR 33 156 -52 316 330 69 12 chr4 6798048 6798221 -195530126 - MIR SINE MIR -64 198 16 1857 104 42 21 chr4 6799316 6799603 -195528744 - AluSc SINE Alu -16 293 1 185 313 48 0 chr4 6800097 6800180 -195528167 + MIR SINE MIR 154 240 -22 1924 116 46 0 chr4 6803702 6803986 -195524361 - AluSg SINE Alu -13 297 1 1707 184 0 9 chr4 6804404 6804719 -195523628 + AluJb SINE Alu 1 312 0 2356 79 0 3 chr4 6804819 6805122 -195523225 + AluSg SINE Alu 1 302 -8 266 190 16 38 chr4 6805352 6805536 -195522811 + (TG)n Simple_repeat Simple_repeat 1 180 0 494 199 11 43 chr4 6805628 6805814 -195522533 + (TG)n Simple_repeat Simple_repeat 1 180 0 208 162 78 36 chr4 6805769 6805936 -195522411 + (ATGTG)n Simple_repeat Simple_repeat 1 174 0 * 437 182 24 30 chr4 6805857 6806022 -195522325 + (TG)n Simple_repeat Simple_repeat 1 164 0 336 360 65 7 chr4 6806194 6806488 -195521859 - L2 LINE L2 -618 2696 2386 234 0 0 0 chr4 6806606 6806634 -195521713 + MLT2A2 LTR ERVL 4 31 -422 3531 79 24 31 chr4 6806636 6806976 -195521371 + HERVL LTR ERVL 5113 5454 -200 399 83 0 0 chr4 6806976 6807036 -195521311 + (TATG)n Simple_repeat Simple_repeat 1 60 0 2231 104 0 0 chr4 6807036 6807315 -195521032 - AluSx SINE Alu -33 279 1 3531 79 24 31 chr4 6807315 6807519 -195520828 + HERVL LTR ERVL 5452 5654 0 3563 38 11 27 chr4 6807519 6807970 -195520377 + MLT2A1 LTR ERVL 1 444 0 209 299 0 30 chr4 6808055 6808122 -195520225 - L2 LINE L2 -76 3196 3132 435 236 149 43 chr4 6809375 6809536 -195518811 - MER5B DNA MER1_type 0 178 1 533 335 62 0 chr4 6809992 6810186 -195518161 + MIR SINE MIR 27 232 -30 281 240 250 42 chr4 6810603 6810795 -195517552 - MIR SINE MIR -29 233 2 278 290 20 10 chr4 6810925 6811025 -195517322 + L2 LINE L2 2787 2887 -427 226 262 98 0 chr4 6811159 6811220 -195517127 + L2 LINE L2 3209 3275 -38 217 258 86 43 chr4 6811300 6811393 -195516954 + MIR SINE MIR 85 181 -81 322 252 159 27 chr4 6812139 6812311 -195516036 + MIR3 SINE MIR 47 241 -21 343 349 38 0 chr4 6813510 6813642 -195514705 + L2 LINE L2 3127 3263 -9 2026 158 0 3 chr4 6813947 6814257 -195514090 - AluJb SINE Alu -3 309 1 2298 111 3 0 chr4 6814590 6814887 -195513460 - AluSx SINE Alu -14 298 1 300 293 132 9 chr4 6816306 6816412 -195511935 + L2 LINE L2 3153 3271 -1 181 213 40 67 chr4 6816509 6816584 -195511763 + L2 LINE L2 3162 3234 -79 524 318 95 37 chr4 6816812 6817139 -195511208 + L2 LINE L2 2967 3312 -1 211 269 141 0 chr4 6817550 6817628 -195510719 + MIR SINE MIR 84 172 -90 238 277 256 15 chr4 6818032 6818169 -195510178 + L2 LINE L2 2926 3095 -177 259 253 0 25 chr4 6818223 6818302 -195510045 + L1ME LINE L1 5743 5819 -302 280 336 118 8 chr4 6818543 6818662 -195509685 + L2 LINE L2 3133 3264 -8 2450 90 0 3 chr4 6819807 6820117 -195508230 + AluSx SINE Alu 1 309 -3 2425 99 3 0 chr4 6820648 6820951 -195507396 - AluSx SINE Alu -8 304 1 394 276 111 50 chr4 6824821 6825002 -195503345 + MIR SINE MIR 20 211 -51 982 213 43 14 chr4 6825005 6825212 -195503135 + MIR SINE MIR 7 219 -43 1147 211 72 7 chr4 6825729 6826033 -195502314 - MER33 DNA MER1_type 0 324 1 2112 126 40 7 chr4 6826277 6826578 -195501769 - AluSx SINE Alu -1 311 1 198 273 18 0 chr4 6826599 6826654 -195501693 + MIR SINE MIR 159 214 -48 184 183 183 14 chr4 6826653 6826724 -195501623 - L3 LINE CR1 -880 697 615 * 184 294 272 11 chr4 6826696 6826788 -195501559 + L2 LINE L2 3149 3264 -8 269 215 0 43 chr4 6829790 6829883 -195498464 + (TA)n Simple_repeat Simple_repeat 2 90 0 21 0 0 0 chr4 6829997 6830018 -195498329 + AT_rich Low_complexity Low_complexity 1 21 0 2418 102 0 9 chr4 6830019 6830334 -195498013 + AluSx SINE Alu 1 312 0 25 0 0 0 chr4 6831459 6831484 -195496863 + AT_rich Low_complexity Low_complexity 1 25 0 298 200 0 0 chr4 6831525 6831580 -195496767 + MLT1E3 LTR MaLR 565 619 -5 701 255 126 69 chr4 6831585 6831613 -195496734 + L2 LINE L2 2724 2749 -564 750 238 37 0 chr4 6831613 6831777 -195496570 + FAM SINE Alu 1 170 -5 701 255 126 69 chr4 6831777 6832003 -195496344 + L2 LINE L2 2749 2961 -352 2102 99 10 42 chr4 6832003 6832316 -195496031 - AluSx SINE Alu -9 303 1 701 255 126 69 chr4 6832316 6832629 -195495718 + L2 LINE L2 2961 3313 0 249 200 0 0 chr4 6832646 6832691 -195495656 + L2 LINE L2 3210 3254 -18 238 196 20 0 chr4 6832975 6833026 -195495321 + L2 LINE L2 1875 1926 -1388 2250 116 0 13 chr4 6833196 6833506 -195494841 + AluSg SINE Alu 1 306 -4 2258 121 0 0 chr4 6833582 6833879 -195494468 - AluSx SINE Alu -15 297 1 185 208 267 50 chr4 6834417 6834518 -195493829 + MIR SINE MIR 20 142 -120 191 300 115 8 chr4 6834739 6834869 -195493478 + L2 LINE L2 2811 2954 -318 191 270 54 79 chr4 6835111 6835265 -195493082 - MIR SINE MIR -63 145 33 290 256 58 0 chr4 6835577 6835669 -195492678 + MIR SINE MIR 69 164 -68 1216 84 0 0 chr4 6835702 6835844 -195492503 - AluSq/x SINE Alu -170 142 1 363 313 88 19 chr4 6835845 6836005 -195492342 - MIR SINE MIR -80 182 12 201 208 75 0 chr4 6836042 6836095 -195492252 - L2 LINE L2 -74 3198 3142 219 218 218 16 chr4 6836112 6836236 -195492111 + L2 LINE L2 2888 3036 -236 808 188 28 28 chr4 6836589 6836765 -195491582 + MER20 DNA MER1_type 18 193 -26 299 240 247 27 chr4 6836939 6837089 -195491258 - MIR SINE MIR -73 189 7 252 240 0 0 chr4 6837150 6837200 -195491147 + L2 LINE L2 3137 3186 -86 202 243 0 81 chr4 6837590 6837664 -195490683 + MIR SINE MIR 75 142 -120 308 321 58 15 chr4 6838090 6838227 -195490120 - MIR SINE MIR -4 258 116 270 250 214 9 chr4 6838307 6838419 -195489928 - MIR SINE MIR -122 140 6 204 307 69 0 chr4 6838457 6838558 -195489789 - MER5A DNA MER1_type -45 144 37 1971 117 92 0 chr4 6839102 6839384 -195488963 - AluSx SINE Alu -4 308 1 2120 122 0 3 chr4 6841181 6841476 -195486871 - AluSx SINE Alu -18 294 1 346 283 92 11 chr4 6841851 6841976 -195486371 - MIR SINE MIR -58 150 51 1119 215 0 14 chr4 6842126 6842349 -195485998 + AluJo SINE Alu 88 307 -5 2432 93 0 0 chr4 6842400 6842701 -195485646 + AluSg SINE Alu 1 301 -9 1246 131 0 6 chr4 6842701 6842876 -195485471 + AluSg/x SINE Alu 134 307 -5 1678 176 13 20 chr4 6842890 6843196 -195485151 + AluJb SINE Alu 3 306 -6 2342 94 0 3 chr4 6843315 6843614 -195484733 + AluSq SINE Alu 1 298 -15 180 338 95 0 chr4 6843703 6843777 -195484570 + MIR SINE MIR 175 255 -7 946 170 12 29 chr4 6843955 6844126 -195484221 + FRAM SINE Alu 1 167 -9 1280 164 9 13 chr4 6844266 6844476 -195483871 + AluJo SINE Alu 86 296 -16 2464 85 0 0 chr4 6844476 6844782 -195483565 + AluSg SINE Alu 1 306 -4 1280 164 9 13 chr4 6844782 6844797 -195483550 + AluJo SINE Alu 296 310 -2 2243 91 7 0 chr4 6844955 6845242 -195483105 + AluSq SINE Alu 7 295 -18 391 297 24 91 chr4 6845741 6845950 -195482397 + MIR SINE MIR 57 251 -11 240 291 98 78 chr4 6846915 6847159 -195481188 + L2 LINE L2 3020 3268 -4 2289 93 0 35 chr4 6848251 6848562 -195479785 - AluSq SINE Alu -13 300 1 384 211 169 41 chr4 6848713 6848917 -195479430 - MIR SINE MIR -26 236 14 2373 96 3 0 chr4 6849334 6849637 -195478710 - AluSx SINE Alu -8 304 1 1706 137 56 14 chr4 6850244 6850412 -195477935 - AluJb SINE Alu -15 297 111 180 0 0 0 chr4 6850412 6850432 -195477915 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1706 137 56 14 chr4 6850432 6850548 -195477799 - AluJb SINE Alu -201 111 1 307 255 122 20 chr4 6850816 6850914 -195477433 - MIR SINE MIR -131 131 24 2180 131 3 6 chr4 6851100 6851414 -195476933 + AluSq SINE Alu 1 313 0 833 328 8 0 chr4 6851448 6851689 -195476658 + MIR SINE MIR 20 262 0 257 258 21 43 chr4 6851857 6851950 -195476397 + MIR3 SINE MIR 112 202 -6 2279 97 30 0 chr4 6851986 6852286 -195476061 - AluSc SINE Alu 0 309 1 558 179 125 9 chr4 6852324 6852436 -195475911 + FLAM_A SINE Alu 1 125 -8 6797 69 9 12 chr4 6855085 6855942 -195472405 + SVA Other Other 531 1385 -1 3747 205 105 42 chr4 6856052 6856530 -195471817 + L1ME1 LINE L1 2093 2540 -4000 1649 187 35 7 chr4 6856530 6856819 -195471528 + AluJo SINE Alu 1 297 -15 3747 205 105 42 chr4 6856819 6857901 -195470446 + L1ME1 LINE L1 2540 3553 -2987 2537 63 0 0 chr4 6857901 6858200 -195470147 - AluY SINE Alu -12 299 1 2202 128 0 0 chr4 6858208 6858505 -195469842 - AluSx SINE Alu -10 302 6 3747 205 105 42 chr4 6858505 6859206 -195469141 + L1ME1 LINE L1 3559 4536 -2004 1821 230 105 14 chr4 6859203 6859772 -195468575 + L1ME1 LINE L1 5922 6542 -18 * 367 254 148 28 chr4 6859809 6859951 -195468396 + L1MC/D LINE L1 5612 5770 -2038 1684 78 207 8 chr4 6860215 6860457 -195467890 - AluSg1 SINE Alu -19 290 1 27 0 0 0 chr4 6860457 6860484 -195467863 + AT_rich Low_complexity Low_complexity 1 27 0 243 362 0 29 chr4 6861328 6861433 -195466914 + MIR SINE MIR 29 130 -132 547 280 176 3 chr4 6862250 6862586 -195465761 - L1MC4 LINE L1 -89 7953 7560 959 187 101 86 chr4 6862588 6863005 -195465342 - LTR37B LTR ERV1 -45 423 1 970 256 140 47 chr4 6863071 6863664 -195464683 - L1ME1 LINE L1 -9 6157 5466 21 0 0 0 chr4 6864392 6864413 -195463934 + GC_rich Low_complexity Low_complexity 1 21 0 882 155 99 6 chr4 6866068 6866229 -195462118 - FRAM SINE Alu -1 175 1 2323 95 14 0 chr4 6867356 6867651 -195460696 + AluSx SINE Alu 1 299 -13 350 233 33 42 chr4 6869342 6869462 -195458885 - MIR SINE MIR -116 146 28 367 259 123 0 chr4 6869560 6869700 -195458647 + MIR SINE MIR 58 216 -46 2230 111 0 0 chr4 6870917 6871205 -195457142 + AluSx SINE Alu 1 288 -24 2101 101 6 54 chr4 6871756 6872072 -195456275 + AluSq SINE Alu 1 301 -12 2269 108 0 7 chr4 6872694 6872999 -195455348 - AluSc SINE Alu -6 303 1 2397 56 3 3 chr4 6873028 6873312 -195455035 - AluY SINE Alu -16 295 12 1629 60 0 0 chr4 6873748 6873965 -195454382 + GSAT Satellite centromeric 1 217 0 754 123 13 175 chr4 6874200 6874428 -195453919 + 7SK RNA RNA 1 191 -2 2370 90 3 0 chr4 6874532 6874831 -195453516 + AluSx SINE Alu 1 300 -12 1784 159 68 3 chr4 6874839 6875192 -195453155 + L1MB3 LINE L1 5775 6150 -33 2196 108 31 0 chr4 6875276 6875564 -195452783 + AluSg SINE Alu 1 297 -13 429 273 46 41 chr4 6875577 6875720 -195452627 + L1ME3A LINE L1 5959 6105 -65 2346 110 0 0 chr4 6875720 6876028 -195452319 - AluSx SINE Alu -4 308 1 429 273 46 41 chr4 6876028 6876078 -195452269 + L1ME3A LINE L1 6105 6153 -17 216 290 195 6 chr4 6876509 6876678 -195451669 + L2 LINE L2 2558 2758 -556 192 355 11 32 chr4 6876829 6876922 -195451425 + L2 LINE L2 2928 3018 -254 360 278 102 24 chr4 6877506 6877711 -195450636 - MIR SINE MIR -34 228 8 202 275 110 28 chr4 6878191 6878300 -195450047 + L2 LINE L2 3150 3267 -5 197 318 136 45 chr4 6880004 6880202 -195448145 - MIR SINE MIR -26 236 21 1907 146 3 23 chr4 6880910 6881212 -195447135 + AluSx SINE Alu 4 299 -13 2308 111 0 13 chr4 6882306 6882442 -195445905 + AluSx SINE Alu 1 137 -175 2246 112 0 3 chr4 6882442 6882738 -195445609 + AluSg SINE Alu 1 295 -15 2308 111 0 13 chr4 6882738 6882908 -195445439 + AluSx SINE Alu 137 303 -9 691 191 37 0 chr4 6883247 6883383 -195444964 + FLAM_C SINE Alu 2 142 -1 207 0 0 0 chr4 6883465 6883488 -195444859 + (TG)n Simple_repeat Simple_repeat 2 24 0 232 269 147 9 chr4 6885167 6885283 -195443064 + MIR SINE MIR 45 177 -69 2423 80 7 0 chr4 6885603 6885904 -195442443 - AluSq SINE Alu -10 303 1 351 270 81 9 chr4 6888582 6888693 -195439654 - MIR SINE MIR -72 136 18 262 0 53 0 chr4 6888729 6888767 -195439580 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2038 125 0 4 chr4 6888772 6889051 -195439296 - AluSx SINE Alu -34 278 1 2403 53 13 20 chr4 6889212 6889514 -195438833 + AluY SINE Alu 1 300 -11 466 304 67 17 chr4 6889534 6889774 -195438573 + L1ME LINE L1 5532 5783 -338 25 31 0 0 chr4 6890157 6890189 -195438158 + AT_rich Low_complexity Low_complexity 1 32 0 524 282 73 10 chr4 6890342 6890548 -195437799 - MER20 DNA MER1_type 0 219 1 2612 40 0 20 chr4 6890937 6891241 -195437106 - AluY SINE Alu -13 298 1 332 330 51 25 chr4 6891336 6891533 -195436814 + MIR SINE MIR 59 260 -2 419 282 38 72 chr4 6893756 6894018 -195434329 + MER112 DNA MER1_type 2 254 -2 352 318 0 80 chr4 6894167 6894211 -195434136 - MIR3 SINE MIR -50 158 112 2222 124 3 0 chr4 6894211 6894517 -195433830 + AluSx SINE Alu 1 307 -5 352 318 0 80 chr4 6894517 6894623 -195433724 - MIR3 SINE MIR -96 112 20 2226 100 7 0 chr4 6896211 6896512 -195431835 - AluY SINE Alu -8 303 1 925 155 20 0 chr4 6897986 6898169 -195430178 - AluSg/x SINE Alu 0 316 131 263 326 10 10 chr4 6898169 6898267 -195430080 + MIR SINE MIR 109 206 -56 1905 182 3 0 chr4 6898616 6898918 -195429429 + AluJb SINE Alu 1 303 -9 27 73 0 0 chr4 6898959 6899014 -195429333 + AT_rich Low_complexity Low_complexity 1 55 0 2351 104 0 10 chr4 6900273 6900582 -195427765 + AluSg1 SINE Alu 1 306 -3 397 199 202 12 chr4 6903313 6903437 -195424910 - AluJb SINE Alu -8 294 174 675 273 116 40 chr4 6903455 6903902 -195424445 - L1MC5 LINE L1 -30 7931 7451 2133 158 0 0 chr4 6903913 6904223 -195424124 + AluJb SINE Alu 1 310 -2 1980 126 0 0 chr4 6904229 6904498 -195423849 + AluSg SINE Alu 1 269 -41 356 280 11 0 chr4 6905935 6906028 -195422319 - L2 LINE L2 -14 3299 3206 245 29 29 0 chr4 6906029 6906063 -195422284 + (TG)n Simple_repeat Simple_repeat 2 36 0 701 118 49 118 chr4 6906393 6906596 -195421751 - MER53 DNA DNA 0 189 1 191 250 39 0 chr4 6906970 6907022 -195421325 + L2 LINE L2 3217 3270 -2 521 130 65 16 chr4 6908116 6908544 -195419803 + (TG)n Simple_repeat Simple_repeat 1 448 0 282 147 54 92 chr4 6908476 6908660 -195419687 + (TAGTG)n Simple_repeat Simple_repeat 3 179 0 * 334 145 67 16 chr4 6908662 6909170 -195419177 + (TG)n Simple_repeat Simple_repeat 1 534 0 314 107 101 0 chr4 6909216 6909375 -195418972 + (TG)n Simple_repeat Simple_repeat 1 175 0 252 161 69 11 chr4 6909388 6909475 -195418872 + (TG)n Simple_repeat Simple_repeat 2 93 0 1638 170 4 0 chr4 6909926 6910197 -195418150 - AluSq SINE Alu -18 295 24 245 281 138 56 chr4 6910337 6910497 -195417850 + L2 LINE L2 2923 3095 -177 181 234 0 21 chr4 6911429 6911476 -195416871 - MIR SINE MIR -126 82 37 348 235 76 34 chr4 6912659 6912778 -195415569 + MIR SINE MIR 40 163 -99 289 308 100 15 chr4 6913440 6913570 -195414777 + MIR SINE MIR 52 192 -70 304 263 72 105 chr4 6913860 6913940 -195414407 + L2 LINE L2 3105 3186 -127 851 207 18 62 chr4 6913940 6914167 -195414180 - MER20 DNA MER1_type -2 217 1 304 263 72 105 chr4 6914167 6914295 -195414052 + L2 LINE L2 3186 3306 -7 222 108 27 0 chr4 6914362 6914399 -195413948 - MIR SINE MIR -62 146 109 539 214 48 8 chr4 6915633 6915759 -195412588 + MIR SINE MIR 40 170 -92 313 237 21 54 chr4 6916633 6916726 -195411621 + L2 LINE L2 3156 3245 -27 262 290 30 20 chr4 6917558 6917658 -195410689 - MIR SINE MIR -142 120 20 635 241 11 43 chr4 6917803 6917990 -195410357 - MIR SINE MIR -51 211 31 645 220 26 6 chr4 6919042 6919200 -195409147 + L1ME1 LINE L1 6025 6165 -1 1814 147 39 23 chr4 6919237 6919408 -195408939 - AluSx SINE Alu 0 312 132 207 0 0 0 chr4 6919408 6919431 -195408916 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1814 147 39 23 chr4 6919431 6919566 -195408781 - AluSx SINE Alu -180 132 1 443 314 84 30 chr4 6919566 6920026 -195408321 - L1M4 LINE L1 -2630 3516 3015 2133 103 3 3 chr4 6920026 6920328 -195408019 + AluSc SINE Alu 1 302 -7 443 314 84 30 chr4 6920328 6920426 -195407921 - L1M4 LINE L1 -3131 3015 2924 23 68 0 0 chr4 6920854 6920898 -195407449 + AT_rich Low_complexity Low_complexity 1 44 0 498 303 147 47 chr4 6921156 6921234 -195407113 + L1ME4a LINE L1 5617 5686 -435 2449 52 0 13 chr4 6921234 6921540 -195406807 + AluY SINE Alu 1 302 -9 498 303 147 47 chr4 6921540 6921821 -195406526 + L1ME4a LINE L1 5686 6012 -109 563 258 82 6 chr4 6921951 6922110 -195406237 - MIR SINE MIR -48 214 44 198 225 0 0 chr4 6922565 6922605 -195405742 - MIR SINE MIR -110 152 113 530 146 115 0 chr4 6922953 6923049 -195405298 - MER53 DNA DNA -82 107 1 452 253 266 0 chr4 6923217 6923375 -195404972 + MIR SINE MIR 38 237 -25 1922 184 34 50 chr4 6923782 6924200 -195404147 + MLT2D LTR ERVL 4 414 0 709 321 4 20 chr4 6925375 6925627 -195402720 - MIR SINE MIR 0 262 15 246 314 86 46 chr4 6926057 6926232 -195402115 - MLT1J1 LTR MaLR -264 182 1 891 160 20 85 chr4 6926325 6926439 -195401908 + MLT1B LTR MaLR 1 98 -292 2201 123 0 0 chr4 6926439 6926749 -195401598 + AluSx SINE Alu 1 310 -2 891 160 20 85 chr4 6926749 6926834 -195401513 + MLT1B LTR MaLR 98 187 -203 566 264 109 10 chr4 6928156 6928357 -195399990 - MLT1C LTR MaLR -7 460 240 806 96 52 0 chr4 6928405 6928520 -195399827 + L1PA11 LINE L1 6054 6174 0 2371 66 0 3 chr4 6929554 6929856 -195398491 - AluY SINE Alu -10 301 1 391 368 41 22 chr4 6929911 6930229 -195398118 - L1MC/D LINE L1 -2036 5772 5449 915 160 7 7 chr4 6930526 6930676 -195397671 - FRAM SINE Alu -15 151 2 511 246 12 76 chr4 6930723 6930894 -195397453 - L1ME3A LINE L1 -5 6165 6006 321 232 36 45 chr4 6930901 6931013 -195397334 - L1ME3A LINE L1 -401 5769 5659 217 217 29 14 chr4 6932621 6932690 -195395657 + (CATA)n Simple_repeat Simple_repeat 3 72 0 189 213 0 0 chr4 6932761 6932808 -195395539 + (CA)n Simple_repeat Simple_repeat 2 48 0 392 270 40 24 chr4 6932808 6932934 -195395413 - L1MC4 LINE L1 -130 7912 7785 789 196 35 30 chr4 6932936 6933135 -195395212 - MLT2D LTR ERVL -7 407 208 391 339 63 27 chr4 6933401 6933622 -195394725 + MIR SINE MIR 28 256 -6 1596 259 60 12 chr4 6934093 6934575 -195393772 + MLT1D LTR MaLR 1 505 0 1345 240 35 114 chr4 6934789 6935360 -195392987 + L2 LINE L2 2430 2955 -359 794 227 16 11 chr4 6935361 6935541 -195392806 + MLT1A1 LTR MaLR 1 181 -184 404 165 94 0 chr4 6935541 6935626 -195392721 + MER4A LTR ERV1 1 93 -571 1597 133 156 96 chr4 6935626 6936011 -195392336 + MER4A LTR ERV1 257 664 0 820 245 0 16 chr4 6936012 6936204 -195392143 + MLT1A1 LTR MaLR 177 365 0 298 289 12 0 chr4 6936204 6936287 -195392060 + L2 LINE L2 2954 3037 -276 237 265 59 29 chr4 6936324 6936426 -195391921 - LTR16C LTR ERVL -2 489 385 190 340 135 23 chr4 6936808 6937023 -195391324 + L2 LINE L2 3075 3313 0 1515 154 50 50 chr4 6937122 6937420 -195390927 - AluJo SINE Alu -14 298 1 229 305 53 23 chr4 6937621 6937752 -195390595 + L1ME4a LINE L1 5974 6108 -13 282 29 0 0 chr4 6938204 6938239 -195390108 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 229 375 48 0 chr4 6938248 6938352 -195389995 - L2 LINE L2 -25 3288 3180 544 103 0 0 chr4 6938730 6938808 -195389539 + AluJb SINE Alu 154 231 -81 720 103 176 73 chr4 6938831 6938967 -195389380 - AluJo SINE Alu -161 151 2 1589 231 43 10 chr4 6938970 6939368 -195388979 - MER67A LTR ERV1 -128 415 5 1467 208 31 0 chr4 6939354 6939671 -195388676 - MLT1C LTR MaLR -140 327 1 * 1812 152 0 26 chr4 6939676 6939979 -195388368 - AluSx SINE Alu -17 295 1 1852 163 5 25 chr4 6940782 6941150 -195387197 + L1MA6 LINE L1 4915 5275 -871 2078 104 7 0 chr4 6941154 6941458 -195386889 + AluSg SINE Alu 1 306 0 406 194 153 0 chr4 6941477 6941575 -195386772 + L1MA6 LINE L1 5963 6075 -225 349 117 0 0 chr4 6941578 6941638 -195386709 - AluJo SINE Alu 0 302 243 1287 124 5 0 chr4 6941641 6941827 -195386520 - AluJo SINE Alu -125 187 1 1102 162 33 50 chr4 6941827 6942068 -195386279 + L1MA6 LINE L1 6062 6298 -2 233 263 187 43 chr4 6942289 6942420 -195385927 + MIR3 SINE MIR 32 163 -45 207 221 11 79 chr4 6942465 6942655 -195385692 + (AGGTG)n Simple_repeat Simple_repeat 4 180 0 230 224 22 62 chr4 6942693 6942872 -195385475 + (AGGTG)n Simple_repeat Simple_repeat 5 176 0 2129 182 45 9 chr4 6943564 6944008 -195384339 + MLT1C LTR MaLR 1 460 -7 682 250 7 0 chr4 6944624 6944768 -195383579 - MLT1C LTR MaLR -2 465 321 494 289 72 4 chr4 6944778 6945013 -195383334 + LTR33 LTR ERVL 235 485 -36 180 322 34 0 chr4 6945068 6945127 -195383220 + L2 LINE L2 3207 3267 -5 404 298 67 8 chr4 6946053 6946197 -195382150 + MIR SINE MIR 20 170 -56 378 283 20 108 chr4 6946590 6946841 -195381506 - L2 LINE L2 -91 3181 2953 2372 60 0 13 chr4 6947005 6947304 -195381043 + AluY SINE Alu 1 295 -16 1665 191 10 93 chr4 6947410 6947818 -195380529 - MLT1A2 LTR MaLR 0 374 1 361 267 199 6 chr4 6948651 6948812 -195379535 - MER117 DNA MER1_type -3 194 3 1506 213 33 0 chr4 6948901 6949201 -195379146 - AluJb SINE Alu 0 312 3 2086 92 0 7 chr4 6949207 6949526 -195378821 - AluSx SINE Alu 0 317 1 1273 213 84 3 chr4 6949948 6950244 -195378103 - MLT1C LTR MaLR -8 459 140 320 316 30 48 chr4 6950510 6950678 -195377669 + MIR SINE MIR 7 171 -91 247 306 24 0 chr4 6950755 6950840 -195377507 + L2 LINE L2 3226 3312 -1 2648 35 0 0 chr4 6950887 6951198 -195377149 + AluY SINE Alu 1 311 0 2048 245 32 4 chr4 6951216 6951372 -195376975 - L1MB8 LINE L1 -9 6169 6014 1407 252 39 120 chr4 6951372 6951825 -195376522 - L1MD1 LINE L1 -238 6073 5585 1853 155 0 3 chr4 6951825 6952122 -195376225 + AluJb SINE Alu 11 306 -6 1407 252 39 120 chr4 6952122 6952170 -195376177 - L1MD1 LINE L1 -726 5585 5535 1907 164 3 3 chr4 6952170 6952480 -195375867 - AluSx SINE Alu -2 310 1 1407 252 39 120 chr4 6952480 6952794 -195375553 - L1MD1 LINE L1 -776 5535 5323 8968 236 58 17 chr4 6952796 6953381 -195374966 - L1MD1 LINE L1 -1249 4966 4406 2505 64 0 3 chr4 6953381 6953693 -195374654 - AluY SINE Alu 0 311 1 8968 236 58 17 chr4 6953693 6956130 -195372217 - L1MD1 LINE L1 -1809 4406 1859 446 203 0 85 chr4 6956224 6956401 -195371946 - AluSg/x SINE Alu -4 306 145 313 329 61 61 chr4 6956808 6957088 -195371259 + L1MEd LINE L1 809 1088 -5031 1516 195 0 10 chr4 6957123 6957415 -195370932 - AluJo SINE Alu -23 289 1 437 234 188 8 chr4 6957433 6957561 -195370786 - MLT1C LTR MaLR -503 151 1 1266 253 160 39 chr4 6957561 6958230 -195370117 - L2 LINE L2 -586 2728 2141 1736 113 49 0 chr4 6958230 6958495 -195369852 + AluSg SINE Alu 33 310 0 1266 253 160 39 chr4 6958495 6958603 -195369744 - L2 LINE L2 -1173 2141 2047 1481 128 6 144 chr4 6958603 6958923 -195369424 + AluJb SINE Alu 1 276 -36 1266 253 160 39 chr4 6958923 6959075 -195369272 - L2 LINE L2 -1267 2047 1915 207 0 0 0 chr4 6959075 6959098 -195369249 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1266 253 160 39 chr4 6959098 6959289 -195369058 - L2 LINE L2 -1399 1915 1456 310 106 76 0 chr4 6959326 6959392 -195368955 + CT-rich Low_complexity Low_complexity 3 73 0 2355 108 0 0 chr4 6959456 6959751 -195368596 - AluSx SINE Alu -17 295 1 4246 165 45 12 chr4 6959783 6960609 -195367738 - L1MC1 LINE L1 0 6333 5481 794 186 3 43 chr4 6960687 6960706 -195367641 - MLT1A1 LTR MaLR 0 365 347 2367 94 3 19 chr4 6960706 6961024 -195367323 - AluSp SINE Alu 0 313 1 794 186 3 43 chr4 6961024 6961313 -195367034 - MLT1A1 LTR MaLR -18 347 1 366 262 210 15 chr4 6961335 6961606 -195366741 - L2 LINE L2 -1986 1328 1005 242 315 108 0 chr4 6962898 6963009 -195365338 + MIR3 SINE MIR 60 182 -26 215 284 196 7 chr4 6963591 6963739 -195364608 - L2 LINE L2 -228 3085 2910 849 200 51 0 chr4 6963912 6964107 -195364240 - MER3 DNA MER1_type -4 205 1 216 97 0 0 chr4 6964714 6964745 -195363602 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 2275 109 3 0 chr4 6964988 6965292 -195363055 - AluSx SINE Alu -7 305 1 339 312 0 0 chr4 6967363 6967456 -195360891 + L2 LINE L2 2967 3059 -213 2681 48 3 3 chr4 6969274 6969587 -195358760 + AluSp SINE Alu 1 313 0 646 263 23 23 chr4 6969654 6969825 -195358522 - MER5B DNA MER1_type -5 173 3 370 310 41 35 chr4 6969900 6970045 -195358302 + L2 LINE L2 3167 3312 -1 2076 120 43 10 chr4 6970129 6970428 -195357919 - AluSg SINE Alu -1 309 1 361 242 62 4 chr4 6970493 6970609 -195357738 - MIR SINE MIR -62 146 30 2257 86 3 16 chr4 6970887 6971023 -195357324 + AluSx SINE Alu 1 137 -175 2470 67 0 3 chr4 6971023 6971320 -195357027 + AluY SINE Alu 1 296 -15 2257 86 3 16 chr4 6971320 6971487 -195356860 + AluSx SINE Alu 137 300 -12 672 315 67 10 chr4 6971973 6972287 -195356060 - L1ME3A LINE L1 -76 6094 5763 1661 74 30 0 chr4 6972515 6972717 -195355630 - AluSg/x SINE Alu -14 298 91 1905 105 86 4 chr4 6972723 6972990 -195355357 + AluSg SINE Alu 1 289 -21 306 67 22 0 chr4 6972990 6973035 -195355312 + Alu SINE Alu 1 46 -257 1595 260 115 50 chr4 6973035 6973208 -195355139 - L1ME3A LINE L1 -1427 4719 4559 2313 111 0 0 chr4 6973208 6973505 -195354842 + AluSx SINE Alu 1 297 -15 1595 260 115 50 chr4 6973505 6973703 -195354644 - L1ME3A LINE L1 -1587 4559 4375 2564 85 6 0 chr4 6973703 6974066 -195354281 - L1PA8 LINE L1 0 6172 5808 1595 260 115 50 chr4 6974066 6974765 -195353582 - L1ME3A LINE L1 -1771 4375 3579 2175 111 0 13 chr4 6974819 6975138 -195353209 + AluSx SINE Alu 5 312 0 639 198 48 0 chr4 6975198 6975324 -195353023 + FLAM_A SINE Alu 1 132 -1 280 245 53 0 chr4 6975570 6975664 -195352683 - L1ME3A LINE L1 -2573 3573 3475 720 217 44 6 chr4 6975982 6976162 -195352185 - MER5A DNA MER1_type 0 189 3 214 245 31 51 chr4 6976174 6976272 -195352075 + L2 LINE L2 3169 3264 -49 1134 146 34 0 chr4 6976643 6976821 -195351526 - AluSg/x SINE Alu 0 310 127 2397 107 0 0 chr4 6976821 6977130 -195351217 - AluSg1 SINE Alu 0 309 1 2638 19 6 35 chr4 6977147 6977462 -195350885 + AluY SINE Alu 1 306 -5 202 179 0 0 chr4 6977641 6977680 -195350667 + L2 LINE L2 3218 3256 -16 2214 102 0 14 chr4 6978419 6978712 -195349635 - AluSx SINE Alu -23 289 1 247 287 77 35 chr4 6979133 6979276 -195349071 + MIR SINE MIR 80 228 -34 355 279 74 16 chr4 6979808 6979930 -195348417 - L2 LINE L2 -5 3308 3180 333 241 58 0 chr4 6979951 6980038 -195348309 + MER69 DNA AcHobo 2435 2526 0 254 225 234 0 chr4 6980144 6980255 -195348092 - Charlie8 DNA MER1_type -2245 172 36 1468 159 40 0 chr4 6981478 6981705 -195346642 + AluJb SINE Alu 42 277 -35 206 0 69 0 chr4 6981712 6981741 -195346606 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 264 59 0 0 chr4 6982177 6982211 -195346136 + (CA)n Simple_repeat Simple_repeat 1 34 0 1750 166 6 32 chr4 6982228 6982542 -195345805 - AluJo SINE Alu -6 306 1 2662 20 0 7 chr4 6982697 6982992 -195345355 - AluYa5 SINE Alu -18 293 1 1921 158 0 32 chr4 6983889 6984199 -195344148 - AluJb SINE Alu -12 300 1 2166 97 7 7 chr4 6987613 6987903 -195340444 - AluSx SINE Alu -22 290 1 539 93 0 0 chr4 6988419 6988494 -195339853 - AluJ/FRAM SINE Alu -8 304 230 1068 259 15 23 chr4 6988624 6988967 -195339380 - L1MC4 LINE L1 -2 8040 7701 1192 112 0 12 chr4 6988968 6989129 -195339218 - AluSg/x SINE Alu -17 295 137 767 218 34 10 chr4 6989130 6989336 -195339011 - L1MC4 LINE L1 -414 7628 7418 1040 219 138 12 chr4 6989373 6989619 -195338728 - AluJo SINE Alu -30 282 6 1582 214 163 12 chr4 6989622 6990108 -195338239 - L1MC4 LINE L1 -654 7388 6830 366 303 68 25 chr4 6990377 6990539 -195337808 - MIR SINE MIR -74 188 20 2518 82 0 0 chr4 6990611 6990916 -195337431 - AluY SINE Alu -6 305 1 636 287 27 27 chr4 6992176 6992399 -195335948 - MIR SINE MIR -12 250 28 2484 80 0 0 chr4 6993213 6993512 -195334835 - AluY SINE Alu -12 299 1 935 261 30 4 chr4 6994016 6994250 -195334097 + MIR SINE MIR 2 241 -21 247 290 167 14 chr4 6994923 6995061 -195333286 + MIR SINE MIR 9 167 -95 809 250 11 0 chr4 6995449 6995633 -195332714 + MER5A DNA MER1_type 1 186 -3 382 200 265 6 chr4 6996176 6996346 -195332001 + L2 LINE L2 1915 2128 -1186 1363 59 53 0 chr4 6996383 6996570 -195331777 - MER107 DNA MER1_type 0 197 1 315 401 16 29 chr4 6997274 6997516 -195330831 + L1MDa LINE L1 21 259 -6281 2302 116 0 0 chr4 6997620 6997922 -195330425 - AluSx SINE Alu -1 311 10 975 227 74 83 chr4 6998404 6998680 -195329667 + L1MDa LINE L1 913 1190 -5351 2221 117 0 7 chr4 6998680 6999021 -195329326 - AluSx SINE Alu 0 312 1 2074 129 3 7 chr4 6999023 6999318 -195329029 - AluJb SINE Alu -18 294 1 975 227 74 83 chr4 6999318 6999616 -195328731 + L1MDa LINE L1 1191 1440 -5101 628 263 0 11 chr4 6999619 6999794 -195328553 + AluSq SINE Alu 2 174 -139 356 322 66 62 chr4 6999832 7000100 -195328247 - L1MCa LINE L1 -2745 3681 3410 189 0 0 0 chr4 7000100 7000121 -195328226 + (C)n Simple_repeat Simple_repeat 1 21 0 356 322 66 62 chr4 7000121 7000172 -195328175 - L1MCa LINE L1 -3016 3410 3361 29 90 0 0 chr4 7000375 7000453 -195327894 + AT_rich Low_complexity Low_complexity 1 78 0 518 296 70 58 chr4 7000500 7001303 -195327044 - L1MCa LINE L1 -4573 2034 1024 270 277 8 40 chr4 7001351 7001511 -195326836 + C-rich Low_complexity Low_complexity 1 154 0 221 278 8 48 chr4 7001701 7001827 -195326520 + CT-rich Low_complexity Low_complexity 2 122 0 2492 68 0 34 chr4 7002095 7002417 -195325930 - AluY SINE Alu 0 311 1 1683 137 91 4 chr4 7002792 7003055 -195325292 + AluJb SINE Alu 1 286 -26 2554 86 0 3 chr4 7003411 7003724 -195324623 - AluSx SINE Alu 0 312 1 263 254 160 41 chr4 7003935 7004104 -195324243 + MIR3 SINE MIR 3 191 -17 209 253 209 0 chr4 7004399 7004490 -195323857 - MIR SINE MIR -63 145 36 196 330 70 51 chr4 7005290 7005563 -195322784 + L2 LINE L2 2994 3271 -1 289 234 70 16 chr4 7005605 7005733 -195322614 - MIR3 SINE MIR -71 137 3 259 303 65 45 chr4 7005989 7006144 -195322203 - MIR3 SINE MIR -37 171 14 2450 75 7 0 chr4 7006278 7006572 -195321775 + AluSc SINE Alu 1 296 -13 255 276 20 51 chr4 7008869 7008967 -195319380 + MIR SINE MIR 160 254 -8 411 380 22 11 chr4 7009460 7009644 -195318703 - MIR SINE MIR -70 192 7 259 330 43 27 chr4 7009896 7010081 -195318266 - L2 LINE L2 -221 3051 2864 370 336 0 15 chr4 7010280 7010417 -195317930 - L2 LINE L2 -189 3083 2949 303 297 55 21 chr4 7011361 7011506 -195316841 + L1ME LINE L1 5592 5741 -380 2285 108 10 3 chr4 7011633 7011940 -195316407 + AluSc SINE Alu 1 309 0 457 311 79 6 chr4 7012140 7012317 -195316030 - MIR SINE MIR -63 199 10 228 313 15 0 chr4 7012699 7012766 -195315581 + L2 LINE L2 3201 3268 -4 866 264 35 9 chr4 7013278 7013505 -195314842 + MIR SINE MIR 27 259 -3 266 273 13 0 chr4 7013506 7013583 -195314764 + MER116 DNA Mariner 2 79 -1 1362 126 0 0 chr4 7013604 7013786 -195314561 - AluSx SINE Alu -19 293 112 940 81 0 0 chr4 7013941 7014052 -195314295 - AluSx SINE Alu -190 123 13 185 384 73 33 chr4 7015060 7015211 -195313136 + MIR SINE MIR 106 262 0 1092 176 39 5 chr4 7015821 7016026 -195312321 + MER20 DNA MER1_type 1 212 -7 209 354 135 25 chr4 7016210 7016529 -195311818 - L2 LINE L2 -1 3271 2918 360 206 63 48 chr4 7016947 7017073 -195311274 - L1MD3 LINE L1 -15 7980 7853 198 0 0 0 chr4 7017468 7017490 -195310857 + (AGCTG)n Simple_repeat Simple_repeat 3 24 0 1011 173 108 124 chr4 7017797 7018044 -195310303 - MLT1A1 LTR MaLR 0 365 124 2051 157 13 0 chr4 7018044 7018350 -195309997 - AluJo SINE Alu 0 312 3 1011 173 108 124 chr4 7018350 7018473 -195309874 - MLT1A1 LTR MaLR -241 124 1 232 343 112 12 chr4 7018496 7018747 -195309600 + L2 LINE L2 2970 3245 -27 198 0 0 0 chr4 7018757 7018779 -195309568 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 396 287 115 6 chr4 7019458 7019632 -195308715 + MIR SINE MIR 70 262 0 203 226 113 0 chr4 7020180 7020233 -195308114 - L2 LINE L2 -40 3232 3174 677 248 26 9 chr4 7020233 7020449 -195307898 + MIR SINE MIR 14 235 -27 194 230 40 27 chr4 7021222 7021296 -195307051 - L2 LINE L2 -8 3264 3190 1170 121 11 0 chr4 7021425 7021599 -195306748 - THE1C LTR MaLR 0 375 200 1067 101 0 0 chr4 7021756 7021904 -195306443 - THE1C LTR MaLR -226 149 2 185 324 45 18 chr4 7022589 7022700 -195305647 - MIR3 SINE MIR -92 116 3 364 296 113 31 chr4 7022808 7022967 -195305380 + MIR3 SINE MIR 15 186 -22 2123 120 0 7 chr4 7023158 7023449 -195304898 - AluJb SINE Alu -23 289 1 291 256 26 13 chr4 7023487 7023595 -195304752 + MIR SINE MIR 38 140 -68 228 258 16 16 chr4 7024110 7024172 -195304175 + L2 LINE L2 3191 3252 -20 254 289 72 0 chr4 7024903 7024986 -195303361 + MIR SINE MIR 32 120 -142 181 282 100 27 chr4 7025552 7025662 -195302685 - MIR SINE MIR -68 140 23 469 276 73 55 chr4 7026015 7026112 -195302235 + L1MC4 LINE L1 7685 7779 -263 273 57 0 0 chr4 7026112 7026147 -195302200 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1574 124 128 23 chr4 7026147 7026405 -195301942 - AluSx SINE Alu -27 285 1 469 276 73 55 chr4 7026405 7026650 -195301697 + L1MC4 LINE L1 7778 8034 -8 194 250 62 0 chr4 7027172 7027236 -195301111 + L2 LINE L2 2994 3061 -211 524 168 0 9 chr4 7028719 7028826 -195299521 + (TGG)n Simple_repeat Simple_repeat 1 106 0 342 0 0 0 chr4 7028948 7028986 -195299361 + (CA)n Simple_repeat Simple_repeat 1 38 0 1519 253 66 2 chr4 7028987 7029414 -195298933 - MLT1C LTR MaLR -8 459 6 3902 211 3 25 chr4 7029425 7029665 -195298682 - L1MB7 LINE L1 0 6184 5940 1950 155 0 32 chr4 7029665 7029981 -195298366 - AluJb SINE Alu -6 306 1 3902 211 3 25 chr4 7029981 7030591 -195297756 - L1MB7 LINE L1 -244 5940 5352 531 242 48 0 chr4 7030986 7031110 -195297237 - MER45A DNA AcHobo -47 131 2 326 322 34 27 chr4 7031480 7031626 -195296721 - MIR SINE MIR 0 262 116 264 159 48 0 chr4 7031717 7031780 -195296567 - MIR SINE MIR -138 124 59 840 275 90 62 chr4 7032381 7032791 -195295556 + MLT1D LTR MaLR 1 473 -32 14081 127 47 8 chr4 7032791 7032991 -195295356 - Tigger1 DNA MER2_type 0 2418 2227 1839 103 38 75 chr4 7032991 7033311 -195295036 + AluSx SINE Alu 1 309 0 14081 127 47 8 chr4 7033311 7035436 -195292911 - Tigger1 DNA MER2_type -191 2227 1 840 275 90 62 chr4 7035436 7035470 -195292877 + MLT1D LTR MaLR 473 505 0 529 270 65 56 chr4 7035763 7035978 -195292369 + MIR SINE MIR 12 228 -34 301 375 52 30 chr4 7036498 7036901 -195291446 + L2 LINE L2 2341 2752 -562 214 241 12 0 chr4 7037309 7037475 -195290872 + (AGGTG)n Simple_repeat Simple_repeat 4 171 0 259 229 38 0 chr4 7037507 7037804 -195290543 + (AGGTG)n Simple_repeat Simple_repeat 1 308 0 234 305 195 0 chr4 7038755 7038873 -195289474 - L1ME LINE L1 -439 5682 5542 2053 108 0 14 chr4 7038974 7039283 -195289064 + AluSx SINE Alu 24 312 0 189 146 49 49 chr4 7039919 7039960 -195288387 - MIR SINE MIR -62 146 106 1892 226 72 53 chr4 7040490 7041033 -195287314 + MLT2B3 LTR ERVL 2 554 0 607 253 27 32 chr4 7041057 7041121 -195287226 - MER5A DNA MER1_type -3 186 123 2563 51 0 3 chr4 7041121 7041415 -195286932 + AluY SINE Alu 1 293 -18 607 253 27 32 chr4 7041415 7041536 -195286811 - MER5A DNA MER1_type -66 123 2 2653 217 18 36 chr4 7042230 7042583 -195285764 - L1MEc LINE L1 -3310 2905 2547 2017 159 0 7 chr4 7042583 7042885 -195285462 - AluJb SINE Alu -12 300 1 2653 217 18 36 chr4 7042885 7043163 -195285184 - L1MEc LINE L1 -3668 2547 2332 2151 154 25 3 chr4 7043163 7043520 -195284827 + MLT1A1 LTR MaLR 1 365 0 2653 217 18 36 chr4 7043520 7043710 -195284637 - L1MEc LINE L1 -3883 2332 2140 191 261 67 60 chr4 7045155 7045289 -195283058 + L3 LINE CR1 1440 1574 -3 464 274 79 70 chr4 7045301 7045629 -195282718 - L2 LINE L2 -14 3258 2928 459 295 53 14 chr4 7045986 7046193 -195282154 - L1MA9 LINE L1 -57 6255 6041 343 237 4 24 chr4 7047289 7047390 -195280957 - MIR SINE MIR -46 162 61 987 195 56 53 chr4 7047450 7047669 -195280678 - MER33 DNA MER1_type -2261 324 101 2333 88 0 0 chr4 7047669 7047988 -195280359 - AluSq SINE Alu 0 319 1 987 195 56 53 chr4 7047988 7048090 -195280257 - MER33 DNA MER1_type -2484 101 1 286 313 47 16 chr4 7048271 7048399 -195279948 - MIR SINE MIR -88 174 43 * 326 256 195 46 chr4 7048382 7048644 -195279703 - L2 LINE L2 0 3313 3013 2014 159 38 28 chr4 7048646 7049201 -195279146 + MLT2A2 LTR ERVL 1 554 0 193 386 47 0 chr4 7049201 7049328 -195279019 - L2 LINE L2 -258 3014 2882 1785 203 53 36 chr4 7049595 7050062 -195278285 + L1MB5 LINE L1 5694 6168 -6 313 280 38 48 chr4 7050834 7050978 -195277369 - MIR SINE MIR -62 146 2 542 193 16 0 chr4 7051046 7051184 -195277163 + L1MB4 LINE L1 6035 6177 -6 335 349 48 0 chr4 7051205 7051331 -195277016 + L1 LINE L1 2706 2837 -3309 763 220 48 0 chr4 7051522 7051690 -195276657 - MER58A DNA MER1_type 0 224 49 244 111 0 0 chr4 7051959 7051995 -195276352 - MADE1 DNA Mariner -37 43 8 2342 87 7 23 chr4 7052327 7052636 -195275711 + AluSq SINE Alu 1 304 -9 270 273 67 16 chr4 7052898 7053033 -195275314 - MIR SINE MIR -56 152 11 323 281 144 14 chr4 7053207 7053353 -195274994 - MIR SINE MIR -74 188 24 258 160 200 10 chr4 7053441 7053541 -195274806 - MIR SINE MIR -117 145 27 30 0 0 0 chr4 7055479 7055509 -195272838 + GC_rich Low_complexity Low_complexity 1 30 0 194 0 39 0 chr4 7056546 7056572 -195271775 + (CCCCCG)n Simple_repeat Simple_repeat 3 29 0 194 318 18 36 chr4 7056890 7057000 -195271347 - MIR SINE MIR -114 148 41 466 250 16 16 chr4 7057125 7057253 -195271094 - L2 LINE L2 -6 3307 3180 801 254 118 16 chr4 7057496 7057811 -195270536 - MLT1I LTR MaLR 0 409 63 1977 186 13 55 chr4 7058076 7058534 -195269813 + MLT1C LTR MaLR 6 444 -23 357 292 119 69 chr4 7058548 7058909 -195269438 - MLT1J LTR MaLR -10 501 111 2234 128 0 0 chr4 7058909 7059206 -195269141 - AluSx SINE Alu -15 297 1 357 292 119 69 chr4 7059206 7059307 -195269040 - MLT1J LTR MaLR -400 111 16 1327 229 81 28 chr4 7059314 7059820 -195268527 - MER69 DNA AcHobo -5 2521 1989 184 265 60 99 chr4 7059905 7060056 -195268291 - MER5A DNA MER1_type -7 182 38 567 259 56 16 chr4 7060142 7060439 -195267908 - MER69 DNA AcHobo -1998 528 166 1909 163 67 0 chr4 7060440 7060796 -195267551 + MLT1B LTR MaLR 1 380 -10 376 269 19 0 chr4 7060792 7060900 -195267447 - MER69 DNA AcHobo -1053 173 64 * 259 207 52 0 chr4 7061149 7061207 -195267140 + L3 LINE CR1 1335 1395 -182 442 290 97 5 chr4 7061306 7061492 -195266855 + MIR SINE MIR 3 205 -57 1045 216 110 49 chr4 7061499 7061907 -195266440 - MLT1C LTR MaLR -4 463 25 397 318 163 25 chr4 7062271 7062418 -195265929 - L2 LINE L2 -38 3234 3109 1506 188 9 59 chr4 7062418 7062738 -195265609 + AluJo SINE Alu 1 304 -8 397 318 163 25 chr4 7062738 7062867 -195265480 - L2 LINE L2 -163 3109 2920 1931 153 40 0 chr4 7063333 7063633 -195264714 - AluJb SINE Alu 0 312 1 293 239 99 0 chr4 7063662 7063733 -195264614 - MIR SINE MIR -154 108 31 507 254 154 29 chr4 7063755 7063865 -195264482 - MIR SINE MIR 0 262 167 2264 115 7 0 chr4 7063865 7064169 -195264178 + AluSx SINE Alu 1 306 -6 507 254 154 29 chr4 7064169 7064290 -195264057 - MIR SINE MIR -95 167 4 341 293 34 27 chr4 7064340 7064487 -195263860 + MIR3 SINE MIR 3 150 -58 224 366 142 6 chr4 7064503 7064686 -195263661 + MIR SINE MIR 38 245 -17 934 192 315 45 chr4 7064875 7065250 -195263097 + L1MD2 LINE L1 5862 6337 -22 1952 123 0 42 chr4 7065403 7065721 -195262626 + AluSx SINE Alu 11 316 0 320 307 47 8 chr4 7065874 7066001 -195262346 - L1ME4a LINE L1 -3 6118 5987 180 77 0 0 chr4 7066202 7066228 -195262119 + (CATA)n Simple_repeat Simple_repeat 3 28 0 323 295 63 48 chr4 7066480 7066536 -195261811 - L1ME4a LINE L1 -459 5662 5608 1984 128 29 0 chr4 7066536 7066844 -195261503 - AluSx SINE Alu 0 316 1 323 295 63 48 chr4 7066844 7066870 -195261477 - L1ME4a LINE L1 -513 5608 5584 778 169 62 6 chr4 7066870 7067047 -195261300 - L1MA5 LINE L1 -4 6296 6110 2397 76 0 48 chr4 7067053 7067368 -195260979 + AluSq SINE Alu 1 300 -13 323 295 63 48 chr4 7067368 7067574 -195260773 - L1ME4a LINE L1 -541 5580 5360 323 315 0 22 chr4 7067584 7067676 -195260671 - L1MC4 LINE L1 -1339 6703 6614 372 22 0 0 chr4 7068272 7068317 -195260030 + (CA)n Simple_repeat Simple_repeat 2 46 0 392 262 52 64 chr4 7068790 7068859 -195259488 - L1ME LINE L1 -451 5788 5720 846 219 63 0 chr4 7068859 7069064 -195259283 - MER20 DNA MER1_type 0 219 2 392 262 52 64 chr4 7069064 7069166 -195259181 - L1ME LINE L1 -519 5720 5619 1472 204 24 21 chr4 7069175 7069508 -195258839 + MLT1A1 LTR MaLR 1 334 -31 2539 87 0 0 chr4 7069621 7069930 -195258417 - AluSq SINE Alu -4 309 1 335 148 0 19 chr4 7070019 7070073 -195258274 + Alu SINE Alu 1 53 -247 337 295 12 42 chr4 7070304 7070576 -195257771 + CT-rich Low_complexity Low_complexity 1 263 0 1406 163 0 22 chr4 7070728 7070955 -195257392 + AluJo SINE Alu 72 293 -19 1234 289 84 29 chr4 7070969 7071698 -195256649 - L1ME LINE L1 -1011 5204 4436 426 297 71 62 chr4 7071721 7071843 -195256504 - L1MEc LINE L1 -3481 2734 2615 3287 164 26 53 chr4 7071843 7071865 -195256482 + L1MB3 LINE L1 5447 5468 -715 1683 208 43 3 chr4 7071865 7072212 -195256135 + MLT1A1 LTR MaLR 1 361 -4 3287 164 26 53 chr4 7072212 7072946 -195255401 + L1MB3 LINE L1 5468 6183 0 426 297 71 62 chr4 7072946 7073497 -195254850 - L1MEc LINE L1 -3600 2615 2093 806 178 89 0 chr4 7073654 7073845 -195254502 + L1MB3 LINE L1 5833 6040 -143 348 231 23 95 chr4 7073876 7074097 -195254250 - L1MEc LINE L1 -3173 3042 2838 * 1017 335 44 26 chr4 7074091 7074822 -195253525 - L1MEc LINE L1 -5546 850 107 228 217 24 24 chr4 7074859 7074942 -195253405 - HAL1 LINE L1 -935 1572 1490 567 248 19 6 chr4 7074967 7075128 -195253219 - MER104 DNA Tc2 -17 163 1 1422 272 50 75 chr4 7075238 7075558 -195252789 - L1MEd LINE L1 -4866 1253 926 648 222 0 0 chr4 7075558 7075710 -195252637 - FLAM_A SINE Alu 0 152 1 1422 272 50 75 chr4 7075710 7076257 -195252090 - L1MEd LINE L1 -5193 926 407 251 289 61 37 chr4 7076538 7076947 -195251400 - L1M4 LINE L1 -1100 5046 4628 212 330 29 19 chr4 7077026 7077129 -195251218 + MIR3 SINE MIR 91 194 -14 1510 200 31 7 chr4 7077198 7077488 -195250859 - AluJo SINE Alu -15 297 1 349 255 10 31 chr4 7077565 7077663 -195250684 - MIR SINE MIR -70 192 97 509 268 153 10 chr4 7077800 7078009 -195250338 - MIR SINE MIR 0 262 24 789 200 87 20 chr4 7079055 7079250 -195249097 - MLT1J LTR MaLR -114 397 190 616 280 100 4 chr4 7079378 7079617 -195248730 - MIR SINE MIR 0 262 1 1361 146 10 5 chr4 7079741 7079963 -195248384 + AluJb SINE Alu 86 308 0 1200 223 57 38 chr4 7079979 7080346 -195248001 - MLT1A2 LTR MaLR 0 374 1 443 74 0 158 chr4 7081034 7081129 -195247218 - MADE1 DNA Mariner 0 80 1 628 121 0 0 chr4 7081230 7081321 -195247026 + AluJb SINE Alu 199 289 -23 184 161 0 0 chr4 7082163 7082194 -195246153 - L2 LINE L2 -19 3294 3264 317 318 54 8 chr4 7082614 7082743 -195245604 + L2 LINE L2 3115 3249 -23 602 287 35 10 chr4 7082860 7083062 -195245285 - MIR SINE MIR -12 250 44 181 274 68 14 chr4 7083208 7083281 -195245066 + MIR SINE MIR 59 135 -73 225 288 0 0 chr4 7084179 7084238 -195244109 - MIR SINE MIR -112 150 92 303 339 25 8 chr4 7084984 7085105 -195243242 - L2 LINE L2 -10 3303 3181 188 289 0 0 chr4 7086007 7086059 -195242288 + L3 LINE CR1 1022 1073 -504 393 298 140 0 chr4 7086059 7086237 -195242110 + L3 LINE CR1 1333 1535 -42 392 231 196 7 chr4 7086749 7086892 -195241455 - MER5A DNA MER1_type -6 183 14 286 259 52 26 chr4 7087138 7087254 -195241093 + LTR16C LTR ERVL 353 471 -20 650 300 23 9 chr4 7087803 7088023 -195240324 + MIR SINE MIR 21 243 -19 1007 231 5 0 chr4 7088100 7088303 -195240044 - MER58A DNA MER1_type 0 224 21 420 299 130 35 chr4 7089924 7090208 -195238139 + L2 LINE L2 3003 3313 0 282 295 49 25 chr4 7090548 7090670 -195237677 + MIR SINE MIR 60 184 -78 250 214 60 86 chr4 7090697 7090814 -195237533 + L2 LINE L2 3016 3129 -143 247 166 33 44 chr4 7090866 7091047 -195237300 + (CA)n Simple_repeat Simple_repeat 2 180 0 194 191 43 21 chr4 7091722 7091769 -195236578 + MIR3 SINE MIR 114 161 -47 617 242 47 43 chr4 7091802 7092013 -195236334 - L1MB7 LINE L1 -14 6166 5953 448 243 96 0 chr4 7092120 7092297 -195236050 + MIR SINE MIR 50 243 -19 2176 210 48 95 chr4 7092490 7093181 -195235166 + L1MB8 LINE L1 5480 6136 -42 1657 180 25 3 chr4 7093181 7093499 -195234848 - AluJb SINE Alu 0 312 1 2176 210 48 95 chr4 7093499 7093541 -195234806 + L1MB8 LINE L1 6136 6178 0 792 280 24 0 chr4 7094151 7094358 -195233989 - MIR SINE MIR -38 224 13 260 336 32 0 chr4 7094408 7094533 -195233814 + L1ME4a LINE L1 5993 6121 0 2255 98 0 7 chr4 7094560 7094867 -195233480 + AluSx SINE Alu 1 305 0 2219 128 0 0 chr4 7094907 7095211 -195233136 + AluSx SINE Alu 1 304 -8 255 250 18 36 chr4 7095338 7095450 -195232897 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 192 163 0 0 chr4 7095452 7095495 -195232852 + GA-rich Low_complexity Low_complexity 2 44 0 234 293 13 0 chr4 7095542 7095617 -195232730 - L1MB7 LINE L1 -258 5863 5788 628 133 0 0 chr4 7095655 7095767 -195232580 - AluSx SINE Alu 0 302 191 1111 106 0 0 chr4 7095768 7095909 -195232438 - AluSx SINE Alu -172 141 1 278 349 108 5 chr4 7096093 7096288 -195232059 + MIR SINE MIR 14 228 -34 193 254 15 30 chr4 7096886 7096953 -195231394 + MIR SINE MIR 81 146 -62 1575 148 121 8 chr4 7097024 7097280 -195231067 - AluSg SINE Alu -25 285 1 512 194 8 0 chr4 7097401 7097535 -195230812 + (TTTA)n Simple_repeat Simple_repeat 4 138 0 195 295 64 13 chr4 7097931 7098009 -195230338 - L2 LINE L2 -1 3271 3190 2498 56 7 13 chr4 7098408 7098710 -195229637 - AluY SINE Alu -11 300 1 290 321 71 9 chr4 7100026 7100138 -195228209 - L2 LINE L2 -1 3271 3153 315 221 0 0 chr4 7100578 7100664 -195227683 + (TG)n Simple_repeat Simple_repeat 1 86 0 336 247 12 0 chr4 7101057 7101138 -195227209 - LTR16C LTR ERVL 0 491 410 2913 148 60 4 chr4 7101163 7101663 -195226684 - LTR10A LTR ERV1 -81 528 1 250 274 179 12 chr4 7101706 7101874 -195226473 - LTR16C LTR ERVL -91 400 205 277 175 113 25 chr4 7102986 7103066 -195225281 + MER53 DNA DNA 1 87 -102 3333 159 11 15 chr4 7103067 7103713 -195224634 + MER50 LTR ERV1 3 724 -10 547 121 103 52 chr4 7103696 7103781 -195224566 - MER53 DNA DNA -67 122 28 * 3252 73 14 2 chr4 7103781 7104220 -195224127 - MLT2A1 LTR ERVL 0 444 1 547 121 103 52 chr4 7104220 7104250 -195224097 - MER53 DNA DNA -161 28 1 250 336 29 10 chr4 7104257 7104361 -195223986 - MIR3 SINE MIR -35 173 68 272 282 87 28 chr4 7104671 7104814 -195223533 + MIR SINE MIR 58 210 -52 460 312 74 0 chr4 7105425 7105627 -195222720 + MER112 DNA MER1_type 32 248 -12 5056 184 36 9 chr4 7105800 7106887 -195221460 + MER45R DNA AcHobo 458 1573 -8 191 284 91 45 chr4 7106995 7107083 -195221264 + MIR SINE MIR 22 113 -95 411 213 11 0 chr4 7107188 7107282 -195221065 + MER5A DNA MER1_type 12 106 -83 1877 165 3 34 chr4 7107638 7107960 -195220387 - AluJb SINE Alu 0 312 1 260 302 35 35 chr4 7108108 7108224 -195220123 + MIR3 SINE MIR 72 187 -21 328 275 9 46 chr4 7108514 7108623 -195219724 - MIR SINE MIR -57 151 47 2164 104 21 3 chr4 7109019 7109308 -195219039 + AluSg SINE Alu 1 294 -16 739 248 169 12 chr4 7109498 7110065 -195218282 - L2 LINE L2 -18 3295 2624 231 232 49 61 chr4 7110440 7110522 -195217825 + MER5B DNA MER1_type 68 148 -30 266 229 105 67 chr4 7110567 7110672 -195217675 + MIR SINE MIR 30 138 -70 355 291 185 7 chr4 7111002 7111153 -195217194 - MER5A DNA MER1_type -8 181 4 188 317 0 0 chr4 7111184 7111244 -195217103 + MER5A DNA MER1_type 128 187 -2 566 323 32 32 chr4 7111506 7111723 -195216624 - MIR SINE MIR -6 256 40 547 314 101 18 chr4 7111723 7112051 -195216296 - MLT1J2 LTR MaLR 0 450 96 1659 127 3 67 chr4 7112072 7112241 -195216106 - AluJo SINE Alu -46 266 121 2200 131 49 25 chr4 7112241 7112607 -195215740 + THE1C LTR MaLR 1 375 0 1659 127 3 67 chr4 7112607 7112721 -195215626 - AluJo SINE Alu -191 121 1 243 306 111 9 chr4 7112737 7112845 -195215502 - L3 LINE CR1 -3 1574 1456 333 191 0 0 chr4 7113151 7113219 -195215128 + MLT1C LTR MaLR 60 127 -263 284 191 32 0 chr4 7113237 7113300 -195215047 - MER50 LTR ERV1 -660 74 10 501 248 108 62 chr4 7113308 7113356 -195214991 + MLT1C LTR MaLR 132 176 -291 2061 117 27 0 chr4 7113356 7113654 -195214693 + AluSx SINE Alu 4 309 -3 501 248 108 62 chr4 7113654 7113911 -195214436 + MLT1C LTR MaLR 176 451 -16 664 267 121 7 chr4 7114094 7114404 -195213943 - L2 LINE L2 -302 3011 2670 255 31 0 0 chr4 7114411 7114443 -195213904 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 193 279 207 0 chr4 7114527 7114638 -195213709 - L2 LINE L2 -248 3065 2932 1885 147 20 0 chr4 7114832 7115131 -195213216 - AluSx SINE Alu -2 310 6 1022 75 0 61 chr4 7115133 7115280 -195213067 - AluSq/x SINE Alu -174 138 1 238 229 0 0 chr4 7115636 7115684 -195212663 + MIR SINE MIR 78 125 -137 2085 101 34 0 chr4 7115748 7116044 -195212303 + AluSx SINE Alu 1 306 -6 2376 51 34 0 chr4 7116044 7116338 -195212009 + AluY SINE Alu 1 304 -7 210 255 0 0 chr4 7116403 7116450 -195211897 + MIR SINE MIR 123 169 -93 1403 141 33 40 chr4 7116940 7117244 -195211103 + AluY SINE Alu 3 304 -7 210 255 0 0 chr4 7117309 7117356 -195210991 + MIR SINE MIR 123 169 -93 2297 105 0 0 chr4 7118228 7118533 -195209814 - AluSc SINE Alu -4 305 1 1732 158 3 58 chr4 7118593 7118923 -195209424 + AluJb SINE Alu 1 312 0 352 309 63 16 chr4 7119134 7119260 -195209087 + MIR SINE MIR 85 216 -46 2337 216 58 21 chr4 7119484 7120066 -195208281 + L1MC1 LINE L1 5729 6332 -1 1459 162 113 19 chr4 7120078 7120344 -195208003 + AluJb SINE Alu 1 291 -21 809 180 0 0 chr4 7121856 7121984 -195206363 - FLAM_A SINE Alu -7 135 8 346 220 150 116 chr4 7121987 7122160 -195206187 - MER5A DNA MER1_type -8 181 3 297 356 0 10 chr4 7122175 7122279 -195206068 - MER5A DNA MER1_type -3 186 84 1822 196 0 3 chr4 7122325 7122703 -195205644 - AluJo SINE Alu 0 377 1 1786 92 117 18 chr4 7122714 7122996 -195205351 - AluSp SINE Alu -3 310 1 651 200 145 33 chr4 7123032 7123410 -195204937 - MLT1D LTR MaLR -25 480 22 182 347 13 0 chr4 7123476 7123551 -195204796 + L2 LINE L2 3184 3259 -13 2155 118 0 6 chr4 7123566 7123879 -195204468 - AluSx SINE Alu -1 311 1 213 121 0 0 chr4 7124090 7124123 -195204224 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 337 372 66 27 chr4 7124393 7124651 -195203696 - L1MEc LINE L1 -3981 2415 2148 404 368 114 51 chr4 7125128 7125761 -195202586 - HAL1b LINE L1 -605 1322 71 337 231 231 11 chr4 7125990 7126081 -195202266 + L1ME4a LINE L1 5990 6100 -21 251 321 107 14 chr4 7126101 7126241 -195202106 + MIR SINE MIR 87 239 -23 33 0 0 0 chr4 7127015 7127048 -195201299 + GC_rich Low_complexity Low_complexity 1 33 0 27 110 0 0 chr4 7127670 7127788 -195200559 + GC_rich Low_complexity Low_complexity 1 118 0 338 309 57 0 chr4 7128243 7128366 -195199981 - MIR SINE MIR -73 189 60 204 301 131 43 chr4 7129310 7129685 -195198662 + L2 LINE L2 2827 3234 -38 225 310 69 21 chr4 7130052 7130197 -195198150 - L1ME4a LINE L1 -2 6119 5968 2460 70 0 3 chr4 7131467 7131779 -195196568 - AluY SINE Alu 0 311 1 377 191 95 0 chr4 7131825 7131909 -195196438 - MIR SINE MIR -69 193 102 303 265 51 43 chr4 7132319 7132436 -195195911 + MIR SINE MIR 37 154 -54 219 288 17 0 chr4 7132446 7132505 -195195842 + MIR SINE MIR 124 183 -79 326 271 28 19 chr4 7133382 7133489 -195194858 - MIR SINE MIR -116 146 39 255 196 0 54 chr4 7134028 7134084 -195194263 + C-rich Low_complexity Low_complexity 2 54 0 841 212 29 24 chr4 7134113 7134486 -195193861 - MLT1C LTR MaLR -1 466 51 223 242 71 50 chr4 7135977 7136076 -195192271 - MIR SINE MIR -77 131 31 448 328 73 25 chr4 7136721 7136925 -195191422 - MIR SINE MIR -13 249 36 912 267 137 37 chr4 7140781 7141212 -195187135 - MLT1K LTR MaLR 0 476 3 239 233 70 35 chr4 7141215 7141301 -195187046 - MLT1K LTR MaLR -484 104 16 2145 124 3 10 chr4 7141521 7141835 -195186512 + AluSq SINE Alu 1 312 -1 1825 184 36 33 chr4 7143624 7143988 -195184359 + MLT1A1 LTR MaLR 1 365 0 2198 116 0 0 chr4 7145367 7145668 -195182679 + AluSx SINE Alu 1 301 -11 254 239 0 0 chr4 7145780 7145826 -195182521 + MIR3 SINE MIR 112 157 -51 747 207 59 12 chr4 7145837 7146006 -195182341 - MER58A DNA MER1_type -13 211 35 328 282 105 0 chr4 7147236 7147360 -195180987 - L1ME4a LINE L1 0 6121 5985 2043 154 0 0 chr4 7147360 7147671 -195180676 - AluSx SINE Alu -1 311 1 301 200 62 0 chr4 7147959 7148024 -195180323 - L1ME4a LINE L1 -5 6116 6048 290 286 31 0 chr4 7148260 7148358 -195179989 + MIR SINE MIR 48 148 -60 224 274 8 48 chr4 7149720 7149844 -195178503 - L2 LINE L2 -229 3043 2925 341 295 9 9 chr4 7150151 7150256 -195178091 + MIR3 SINE MIR 58 162 -46 494 300 184 10 chr4 7150811 7151121 -195177226 + L2 LINE L2 1731 2094 -1220 190 330 142 34 chr4 7151299 7151532 -195176815 + L2 LINE L2 2273 2530 -784 1526 179 10 23 chr4 7154258 7154560 -195173787 - AluJb SINE Alu -14 298 1 237 263 17 0 chr4 7156848 7157023 -195171324 + (TG)n Simple_repeat Simple_repeat 2 179 0 249 222 35 0 chr4 7157049 7157220 -195171127 + (TG)n Simple_repeat Simple_repeat 2 178 0 313 217 24 6 chr4 7157249 7157415 -195170932 + (TG)n Simple_repeat Simple_repeat 2 170 0 214 274 57 57 chr4 7161840 7161964 -195166383 - MIR SINE MIR -80 182 59 306 305 80 53 chr4 7162085 7162236 -195166111 + MIR3 SINE MIR 23 177 -31 423 136 45 0 chr4 7162248 7162334 -195166013 - AluJb SINE Alu 0 301 213 329 333 119 6 chr4 7163062 7163230 -195165117 - L2 LINE L2 0 3313 3127 1203 205 91 18 chr4 7163367 7163708 -195164639 + MLT1D LTR MaLR 1 366 -139 206 337 58 0 chr4 7164614 7164700 -195163647 - MIR SINE MIR -78 184 94 512 271 80 24 chr4 7164714 7165131 -195163216 + MLT1F1 LTR MaLR 10 537 -30 3209 159 270 1 chr4 7165758 7166406 -195161941 - LTR12 LTR ERV1 0 826 5 1936 139 76 80 chr4 7166422 7167026 -195161321 - pTR5 LTR ERV1 -1094 1344 743 2015 208 21 68 chr4 7167236 7167809 -195160538 + MLT2B3 LTR ERVL 1 546 -8 567 278 96 5 chr4 7167978 7168165 -195160182 + MIR SINE MIR 47 250 -12 291 312 29 2 chr4 7168173 7168284 -195160063 + MIR SINE MIR 69 180 -62 240 209 0 0 chr4 7168327 7168413 -195159934 + (TTCA)n Simple_repeat Simple_repeat 2 87 0 4453 64 7 0 chr4 7168677 7169227 -195159120 + MER41A LTR ERV1 1 554 0 1253 286 77 31 chr4 7169276 7169610 -195158737 - HAL1 LINE L1 -75 2432 2115 1940 104 93 0 chr4 7169610 7169890 -195158457 - AluSx SINE Alu -6 306 1 1253 286 77 31 chr4 7169890 7170208 -195158139 - HAL1 LINE L1 -392 2115 1750 378 348 84 31 chr4 7170227 7170426 -195157921 - MLT1J LTR MaLR -16 495 271 3237 158 18 125 chr4 7170426 7171000 -195157347 + LTR8 LTR ERV1 1 472 -219 2123 115 0 0 chr4 7171000 7171286 -195157061 + AluSx SINE Alu 1 286 -26 3237 158 18 125 chr4 7171286 7171485 -195156862 + LTR8 LTR ERV1 472 691 0 378 348 84 31 chr4 7171485 7171607 -195156740 - MLT1J LTR MaLR -240 271 157 288 216 95 0 chr4 7171697 7171771 -195156576 - HAL1 LINE L1 -745 1762 1682 2674 197 23 49 chr4 7171969 7172210 -195156137 + MER41C LTR ERV1 1 247 -307 2104 100 3 29 chr4 7172210 7172521 -195155826 + AluSx SINE Alu 1 303 -9 2674 197 23 49 chr4 7172521 7172848 -195155499 + MER41C LTR ERV1 247 554 0 264 214 0 51 chr4 7172985 7173094 -195155253 + MLT1H LTR MaLR 447 549 0 902 271 135 67 chr4 7173094 7173482 -195154865 - HAL1 LINE L1 -851 1656 1296 2172 81 3 3 chr4 7173482 7173804 -195154543 - AluSx SINE Alu 0 322 1 902 271 135 67 chr4 7173804 7174269 -195154078 - HAL1 LINE L1 -1211 1296 729 1988 133 7 7 chr4 7174269 7174571 -195153776 - AluSx SINE Alu -10 302 1 902 271 135 67 chr4 7174571 7174665 -195153682 - HAL1 LINE L1 -1778 729 643 440 307 33 0 chr4 7174831 7175043 -195153304 - HAL1 LINE L1 -2178 329 111 183 328 66 0 chr4 7175171 7175232 -195153115 - L2 LINE L2 -42 3230 3166 631 329 18 18 chr4 7175434 7175656 -195152691 + MIR SINE MIR 5 226 -36 1394 228 23 49 chr4 7176357 7176787 -195151560 - MLT1D LTR MaLR -2 503 85 371 268 16 57 chr4 7176895 7177018 -195151329 + MIR SINE MIR 50 167 -95 267 254 30 0 chr4 7177563 7177630 -195150717 + MIR SINE MIR 69 137 -125 360 364 74 12 chr4 7177706 7177948 -195150399 - MIR SINE MIR -4 258 2 228 35 0 0 chr4 7178181 7178210 -195150137 + (CCA)n Simple_repeat Simple_repeat 1 29 0 195 69 0 0 chr4 7179080 7179109 -195149238 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 232 280 80 0 chr4 7179759 7179834 -195148513 + L2 LINE L2 3192 3272 0 247 290 0 14 chr4 7179964 7180033 -195148314 + L2 LINE L2 3203 3270 -2 1315 148 71 97 chr4 7181088 7181398 -195146949 + AluJo SINE Alu 3 304 -8 2249 91 3 0 chr4 7181582 7181893 -195146454 + AluSq SINE Alu 1 312 0 233 246 33 0 chr4 7182522 7182583 -195145764 + MIR SINE MIR 9 71 -191 734 100 0 0 chr4 7183342 7183442 -195144905 + AluSq SINE Alu 153 252 -61 321 293 0 9 chr4 7183485 7183591 -195144756 + MLT1K LTR MaLR 162 266 -322 539 229 67 14 chr4 7187191 7187364 -195140983 + MIR SINE MIR 9 190 -64 204 311 44 78 chr4 7187715 7187787 -195140560 - L2 LINE L2 -104 3209 3136 1574 184 116 32 chr4 7187787 7188167 -195140180 + MLT2D LTR ERVL 1 412 -2 204 311 44 78 chr4 7188167 7188274 -195140073 - L2 LINE L2 -177 3136 3036 328 307 143 32 chr4 7188673 7188862 -195139485 + MIR SINE MIR 22 231 -31 418 306 76 48 chr4 7188961 7189275 -195139072 + MLT1L LTR MaLR 216 538 -77 182 283 0 0 chr4 7189328 7189374 -195138973 + MIR SINE MIR 216 261 -1 339 242 11 11 chr4 7190256 7190347 -195138000 + L2 LINE L2 2969 3059 -213 262 313 43 26 chr4 7191344 7191459 -195136888 - MIR SINE MIR -97 165 49 203 244 110 0 chr4 7191565 7191647 -195136700 + MIR SINE MIR 39 113 -95 240 86 0 0 chr4 7192501 7192536 -195135811 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 476 320 178 8 chr4 7192548 7193034 -195135313 - L2 LINE L2 -27 3286 2708 216 167 0 0 chr4 7193161 7193197 -195135150 + G-rich Low_complexity Low_complexity 2 37 0 245 233 0 17 chr4 7194064 7194124 -195134223 + CT-rich Low_complexity Low_complexity 4 62 0 382 204 33 39 chr4 7194137 7194318 -195134029 + CT-rich Low_complexity Low_complexity 1 180 0 300 209 30 30 chr4 7194356 7194490 -195133857 + CT-rich Low_complexity Low_complexity 2 135 0 532 237 10 23 chr4 7194506 7194805 -195133542 + CT-rich Low_complexity Low_complexity 1 295 0 288 233 0 48 chr4 7195388 7195491 -195132856 + MER58B DNA MER1_type 244 341 0 314 259 80 56 chr4 7195529 7195691 -195132656 + MIR SINE MIR 11 176 -86 444 82 0 0 chr4 7196090 7196151 -195132196 + (TA)n Simple_repeat Simple_repeat 2 62 0 228 111 0 0 chr4 7197007 7197043 -195131304 + (CA)n Simple_repeat Simple_repeat 2 37 0 187 270 52 52 chr4 7197520 7197635 -195130712 + L2 LINE L2 1963 2077 -1237 260 203 16 16 chr4 7197849 7197913 -195130434 + MIR SINE MIR 82 145 -63 665 269 123 19 chr4 7199495 7199908 -195128439 + L2 LINE L2 2447 2902 -412 2144 112 10 0 chr4 7200053 7200348 -195127999 + AluSx SINE Alu 5 302 -10 344 224 82 31 chr4 7200413 7200511 -195127836 + MIR SINE MIR 20 122 -140 1487 221 126 9 chr4 7200512 7200956 -195127391 + MLT1D LTR MaLR 1 496 -9 471 216 234 0 chr4 7200975 7201071 -195127276 + Tigger2 DNA MER2_type 4 76 -2642 459 92 0 0 chr4 7201071 7201136 -195127211 + (CA)n Simple_repeat Simple_repeat 2 66 0 471 216 234 0 chr4 7201136 7201206 -195127141 + Tigger2 DNA MER2_type 76 209 -2509 597 258 0 26 chr4 7201210 7201365 -195126982 + Tigger2 DNA MER2_type 2558 2708 -10 239 233 163 54 chr4 7201368 7201497 -195126850 + MIR SINE MIR 120 262 0 248 288 68 8 chr4 7201793 7201911 -195126436 + MIR SINE MIR 40 164 -98 1441 142 150 11 chr4 7202451 7202711 -195125636 + AluSg SINE Alu 1 296 -14 259 337 83 0 chr4 7202752 7202957 -195125390 + L1M4 LINE L1 3545 3766 -2380 348 216 201 37 chr4 7203600 7203734 -195124613 - L1ME4a LINE L1 -4 6117 5962 407 368 35 26 chr4 7203751 7203979 -195124368 - L1ME4a LINE L1 -226 5895 5666 984 244 102 48 chr4 7204317 7204777 -195123570 + MLT1D LTR MaLR 1 485 -20 201 366 24 0 chr4 7204892 7204974 -195123373 + L2 LINE L2 2283 2366 -948 268 292 80 9 chr4 7205324 7205437 -195122910 + L2 LINE L2 2944 3064 -249 334 180 169 45 chr4 7205851 7205940 -195122407 - L2 LINE L2 -5 3267 3168 375 256 214 12 chr4 7206094 7206262 -195122085 + MIR SINE MIR 60 261 -1 230 325 25 0 chr4 7206471 7206551 -195121796 - L2 LINE L2 -174 3098 3017 353 246 112 39 chr4 7207702 7207881 -195120466 + MLT1K LTR MaLR 346 537 -51 254 301 58 39 chr4 7207922 7208025 -195120322 - MIR SINE MIR -138 124 20 703 283 82 9 chr4 7208247 7208466 -195119881 + MIR SINE MIR 28 262 0 913 50 8 25 chr4 7208571 7208690 -195119657 + AluY SINE Alu 24 140 -171 * 1168 147 66 0 chr4 7208689 7208886 -195119461 + AluSc SINE Alu 79 288 -21 295 313 52 0 chr4 7209712 7209808 -195118539 + MLT1I LTR MaLR 110 210 -199 1933 113 3 31 chr4 7210012 7210339 -195118008 + AluSx SINE Alu 1 319 0 213 302 0 0 chr4 7211260 7211313 -195117034 + MIR SINE MIR 95 147 -61 1117 210 170 51 chr4 7211727 7212175 -195116172 + MLT1D LTR MaLR 1 501 -4 419 355 110 23 chr4 7213449 7213805 -195114542 + HAL1 LINE L1 880 1276 -1231 213 349 46 34 chr4 7214576 7214751 -195113596 + L2 LINE L2 3094 3270 -2 205 313 12 24 chr4 7214911 7214994 -195113353 - MIR SINE MIR -97 111 30 421 332 155 18 chr4 7215132 7215409 -195112938 + L2 LINE L2 2999 3313 0 492 31 0 0 chr4 7215512 7215577 -195112770 - L1PA2 LINE L1 -162 5993 5929 1280 27 0 0 chr4 7215577 7215726 -195112621 + L1PA2 LINE L1 6007 6155 0 2225 107 3 10 chr4 7215903 7216213 -195112134 + AluSx SINE Alu 1 308 -4 288 298 132 3 chr4 7216485 7216659 -195111688 - MIR SINE MIR -54 208 18 * 695 313 48 4 chr4 7216658 7216885 -195111462 + MIR SINE MIR 14 250 -12 300 336 41 0 chr4 7216916 7217038 -195111309 + MIR3 SINE MIR 33 159 -49 254 284 86 9 chr4 7217077 7217193 -195111154 + MIR3 SINE MIR 7 131 -77 261 307 100 7 chr4 7217256 7217396 -195110951 + MIR3 SINE MIR 7 159 -49 515 248 20 39 chr4 7217556 7217709 -195110638 - MER58B DNA MER1_type 0 341 192 7266 46 5 1 chr4 7218132 7219693 -195108654 + L1PA6 LINE L1 4592 6148 -6 235 138 0 0 chr4 7219717 7219775 -195108572 + Charlie5 DNA MER1_type 2471 2528 -84 23 54 0 0 chr4 7219775 7219812 -195108535 + AT_rich Low_complexity Low_complexity 1 37 0 385 342 21 0 chr4 7220308 7220470 -195107877 - MIR SINE MIR -77 131 8 1699 195 18 34 chr4 7220948 7221328 -195107019 - MLT1B LTR MaLR -16 374 1 401 380 81 9 chr4 7221566 7221787 -195106560 + MIR SINE MIR 21 257 -5 266 327 30 0 chr4 7222812 7222913 -195105434 + MIR SINE MIR 87 190 -72 830 257 4 69 chr4 7222991 7223236 -195105111 + MIR SINE MIR 2 230 -32 463 228 41 81 chr4 7223393 7223491 -195104856 + MER63A DNA MER1_type 1 89 -1599 2375 80 0 3 chr4 7223491 7223803 -195104544 + AluY SINE Alu 1 311 0 463 228 41 81 chr4 7223803 7223901 -195104446 + MER63A DNA MER1_type 89 189 -21 661 284 155 9 chr4 7224192 7224734 -195103613 - L2 LINE L2 -19 3294 2642 557 330 15 15 chr4 7224767 7224964 -195103383 - MIR SINE MIR -31 231 35 198 328 160 8 chr4 7224971 7225102 -195103245 - L2 LINE L2 -668 2646 2496 236 303 45 0 chr4 7225155 7225221 -195103126 - MER91A DNA MER1_type 0 196 128 212 333 14 0 chr4 7225334 7225406 -195102941 + L2 LINE L2 3200 3272 0 251 184 0 0 chr4 7225426 7225475 -195102872 - MIR SINE MIR -129 79 31 197 382 20 20 chr4 7226274 7226376 -195101971 + L3 LINE CR1 1239 1340 -237 209 345 82 73 chr4 7226610 7226938 -195101409 - L2 LINE L2 -3 3269 2939 221 369 70 16 chr4 7226998 7227185 -195101162 - L2 LINE L2 -473 2841 2645 547 240 223 26 chr4 7228288 7228517 -195099830 + L2 LINE L2 935 1208 -2106 241 232 211 11 chr4 7228588 7228683 -195099664 + L2 LINE L2 3197 3310 -3 597 258 36 36 chr4 7229329 7229523 -195098824 - MER3 DNA MER1_type -15 194 1 387 309 24 73 chr4 7229532 7229778 -195098569 - MER113 DNA MER1_type? -279 242 9 302 331 37 7 chr4 7230010 7230146 -195098201 + L2 LINE L2 3132 3271 -1 381 292 62 31 chr4 7230343 7230504 -195097843 + MIR3 SINE MIR 11 176 -32 283 270 70 0 chr4 7230614 7230714 -195097633 + MLT1K LTR MaLR 74 180 -408 248 243 87 78 chr4 7231311 7231414 -195096933 - MIR SINE MIR -131 131 28 1031 195 35 35 chr4 7231766 7232027 -195096320 + MIR SINE MIR 2 262 0 282 300 0 0 chr4 7233092 7233162 -195095185 + MIR SINE MIR 73 142 -120 393 190 25 0 chr4 7233264 7233343 -195095004 + MLT1J LTR MaLR 103 183 -328 240 282 69 23 chr4 7233445 7233576 -195094771 + MLT1J2 LTR MaLR 313 449 -1 255 302 29 86 chr4 7233702 7233841 -195094506 + L2 LINE L2 3142 3272 0 324 240 0 0 chr4 7234024 7234124 -195094223 + (TG)n Simple_repeat Simple_repeat 1 100 0 219 389 45 54 chr4 7234612 7234833 -195093514 - L2 LINE L2 -97 3175 2957 303 353 17 8 chr4 7234894 7235013 -195093334 + L2 LINE L2 3133 3252 -20 295 278 0 75 chr4 7235600 7235733 -195092614 + MIR SINE MIR 28 150 -112 283 339 85 12 chr4 7235766 7235931 -195092416 - MIR SINE MIR -50 212 36 796 160 42 61 chr4 7236217 7236429 -195091918 + MLT2D LTR ERVL 207 414 0 190 365 12 12 chr4 7236481 7236566 -195091781 - MIR SINE MIR -134 128 44 1843 149 3 10 chr4 7236644 7236940 -195091407 - AluJb SINE Alu -10 302 9 2176 101 0 13 chr4 7237568 7237875 -195090472 + AluSx SINE Alu 1 303 -9 264 358 47 0 chr4 7239023 7239171 -195089176 - MIR SINE MIR -21 241 87 317 295 74 58 chr4 7239863 7240053 -195088294 + MIR SINE MIR 15 207 -55 246 211 21 21 chr4 7240143 7240238 -195088109 + C-rich Low_complexity Low_complexity 3 97 0 296 359 8 0 chr4 7242298 7242429 -195085918 + Charlie8 DNA MER1_type 84 215 -2202 545 218 316 15 chr4 7242705 7242817 -195085530 + L2 LINE L2 2347 2424 -890 486 0 0 0 chr4 7242817 7242871 -195085476 + (TC)n Simple_repeat Simple_repeat 1 54 0 369 0 0 0 chr4 7242870 7242911 -195085436 + (CA)n Simple_repeat Simple_repeat 1 41 0 * 545 218 316 15 chr4 7242871 7243133 -195085214 + L2 LINE L2 2424 2782 -532 420 380 121 13 chr4 7243589 7244037 -195084310 + L2 LINE L2 2815 3310 -3 257 250 50 75 chr4 7244551 7244680 -195083667 + L1ME4a LINE L1 5965 6091 -30 509 189 0 0 chr4 7244680 7244770 -195083577 - L1MA10 LINE L1 -2 6332 6243 257 250 50 75 chr4 7244770 7244800 -195083547 + L1ME4a LINE L1 6091 6120 -1 299 307 23 0 chr4 7244927 7245015 -195083332 - MIR SINE MIR -56 206 117 387 307 92 7 chr4 7245044 7245197 -195083150 + MIR SINE MIR 31 196 -66 205 179 0 128 chr4 7245667 7245745 -195082602 + L2 LINE L2 3016 3083 -189 2163 122 10 0 chr4 7245757 7246061 -195082286 - AluSx SINE Alu -5 307 1 231 235 0 0 chr4 7246187 7246238 -195082109 - MIR SINE MIR -1 261 211 2413 252 45 57 chr4 7246240 7247723 -195080624 + L1ME LINE L1 10 1472 -4608 1988 109 29 29 chr4 7247723 7248035 -195080312 + AluSq SINE Alu 1 312 -1 2413 252 45 57 chr4 7248035 7248051 -195080296 + L1ME LINE L1 1472 1487 -4593 181 265 286 0 chr4 7248070 7248168 -195080179 - MIR SINE MIR -74 188 63 891 235 28 12 chr4 7248553 7248800 -195079547 + MLT1C LTR MaLR 1 251 -216 356 105 0 0 chr4 7248814 7248871 -195079476 + Alu SINE Alu 1 57 -245 1011 214 5 9 chr4 7248877 7249101 -195079246 + MLT1C LTR MaLR 245 467 0 346 286 20 82 chr4 7249258 7249405 -195078942 + MIR SINE MIR 54 191 -71 765 284 47 17 chr4 7249870 7250106 -195078241 - MIR SINE MIR -11 251 9 247 270 37 10 chr4 7251437 7251538 -195076809 + MIR3 SINE MIR 57 162 -46 306 214 107 24 chr4 7252040 7252124 -195076223 + MIR SINE MIR 45 135 -73 1157 156 6 0 chr4 7252249 7252429 -195075918 + L1MB4 LINE L1 6000 6180 0 1018 282 133 16 chr4 7252429 7252939 -195075408 - L2 LINE L2 -5 3308 2747 1449 191 2 97 chr4 7253233 7253658 -195074689 - L1MB5 LINE L1 0 6174 5790 318 337 101 18 chr4 7254225 7254394 -195073953 + MER5A DNA MER1_type 7 189 0 325 248 155 19 chr4 7254427 7254588 -195073759 + MIR SINE MIR 80 262 0 226 304 0 0 chr4 7254743 7254799 -195073548 + MIR SINE MIR 111 166 -96 413 313 101 0 chr4 7255175 7255392 -195072955 + L2 LINE L2 2539 2777 -537 373 366 52 0 chr4 7255485 7255657 -195072690 - L2 LINE L2 0 3272 3092 194 250 62 0 chr4 7256540 7256604 -195071743 - MIR SINE MIR -81 181 114 283 348 18 9 chr4 7256807 7256919 -195071428 - MIR SINE MIR -42 220 108 354 245 23 23 chr4 7256976 7257139 -195071208 + MER63 DNA MER1_type 39 1679 -9 377 241 0 0 chr4 7257165 7257244 -195071103 + MER63 DNA MER1_type 977 1055 -5 522 251 95 6 chr4 7257824 7258003 -195070344 + MIR SINE MIR 9 203 -59 2487 266 57 23 chr4 7258015 7259443 -195068904 + L1ME1 LINE L1 4665 6140 -26 271 262 0 0 chr4 7260285 7260346 -195068001 + Charlie1 DNA MER1_type 1 61 -2700 1688 148 64 27 chr4 7260353 7260757 -195067590 + Charlie1 DNA MER1_type 2343 2761 0 630 283 5 56 chr4 7262095 7262293 -195066054 + MIR SINE MIR 6 193 -69 268 178 27 14 chr4 7262652 7262725 -195065622 + CT-rich Low_complexity Low_complexity 1 74 0 284 337 91 30 chr4 7262752 7262978 -195065369 - L2 LINE L2 -37 3235 2994 1980 100 0 0 chr4 7263814 7264085 -195064262 + AluSx SINE Alu 40 310 -2 288 246 36 17 chr4 7264136 7264238 -195064109 + MIR3 SINE MIR 14 117 -114 182 245 147 39 chr4 7264784 7264886 -195063461 - MER5A DNA MER1_type -30 159 47 540 327 25 15 chr4 7265064 7265266 -195063081 + MIR SINE MIR 36 239 -23 378 294 94 31 chr4 7265298 7265458 -195062889 - MIR SINE MIR -32 230 61 211 343 0 0 chr4 7266253 7266326 -195062021 - MIR SINE MIR -10 252 180 1641 125 3 96 chr4 7266643 7266987 -195061360 + AluSx SINE Alu 1 312 0 970 233 146 46 chr4 7266997 7267399 -195060948 + MLT1D LTR MaLR 31 451 -16 2097 98 7 19 chr4 7267587 7267894 -195060453 - AluSx SINE Alu -9 303 1 1375 205 91 3 chr4 7268029 7268326 -195060021 + MER33 DNA MER1_type 1 323 -1 249 337 123 6 chr4 7268784 7268947 -195059400 - MER5A DNA MER1_type -1 188 7 218 350 26 17 chr4 7269876 7269993 -195058354 - MIR SINE MIR -58 150 33 266 293 116 0 chr4 7270003 7270150 -195058197 + L2 LINE L2 2894 3057 -215 638 250 0 73 chr4 7270962 7271036 -195057311 - MIR SINE MIR -50 212 134 1858 130 0 11 chr4 7271036 7271366 -195056981 - AluJb SINE Alu 0 327 1 638 250 0 73 chr4 7271366 7271482 -195056865 - MIR SINE MIR -128 134 35 2488 65 0 0 chr4 7271739 7272046 -195056301 - AluY SINE Alu -4 307 1 213 159 0 0 chr4 7272145 7272189 -195056158 + MIR SINE MIR 178 221 -41 247 354 27 4 chr4 7272470 7272627 -195055720 - MIR SINE MIR -16 246 84 213 288 45 0 chr4 7272698 7272764 -195055583 - MIR SINE MIR -95 113 45 2119 151 11 3 chr4 7272896 7273247 -195055100 + MLT1A1 LTR MaLR 12 365 0 376 351 0 6 chr4 7273360 7273534 -195054813 + (CA)n Simple_repeat Simple_repeat 1 173 0 227 293 40 10 chr4 7273950 7274049 -195054298 - MIR SINE MIR -127 135 34 402 21 0 0 chr4 7274265 7274312 -195054035 + (TG)n Simple_repeat Simple_repeat 2 48 0 212 329 12 12 chr4 7274750 7274835 -195053512 - MIR SINE MIR -70 192 108 294 311 21 10 chr4 7274891 7275032 -195053315 + MIR SINE MIR 11 152 -69 652 298 93 0 chr4 7275904 7276162 -195052185 - L3 LINE CR1 -25 1552 1271 196 370 16 8 chr4 7276232 7276359 -195051988 + L2 LINE L2 2305 2432 -882 415 227 134 0 chr4 7276445 7276564 -195051783 - MIR SINE MIR -113 149 15 377 238 25 17 chr4 7278183 7278311 -195050036 + MIR SINE MIR 35 162 -58 372 293 67 30 chr4 7278474 7278638 -195049709 - MIR SINE MIR -78 184 15 237 247 22 56 chr4 7278989 7279078 -195049269 - L2 LINE L2 -2 3270 3185 249 226 60 12 chr4 7279237 7279321 -195049026 + MER58C DNA MER1_type 58 145 -70 1889 108 0 34 chr4 7279335 7279630 -195048717 + AluSx SINE Alu 28 312 0 352 198 49 0 chr4 7279631 7279712 -195048635 + MER58C DNA MER1_type 115 199 -16 1462 217 119 14 chr4 7279802 7280171 -195048176 - MLT1C LTR MaLR -1 466 59 261 292 7 73 chr4 7282462 7282599 -195045748 + MIR SINE MIR 24 151 -111 2642 111 16 5 chr4 7282640 7283026 -195045321 - MLT1B LTR MaLR 0 390 1 407 268 91 103 chr4 7283286 7283364 -195044983 - L2 LINE L2 -1 3312 3235 2194 112 6 6 chr4 7283364 7283676 -195044671 - AluSx SINE Alu 0 312 1 407 268 91 103 chr4 7283676 7283993 -195044354 - L2 LINE L2 -78 3235 2922 285 51 0 0 chr4 7284073 7284112 -195044235 + (TTAGGG)n Simple_repeat Simple_repeat 5 43 0 573 318 26 0 chr4 7285031 7285226 -195043121 + MIR SINE MIR 29 228 -34 490 150 42 0 chr4 7285986 7286106 -195042241 + (TG)n Simple_repeat Simple_repeat 2 126 0 350 211 56 0 chr4 7287354 7287425 -195040922 + L2 LINE L2 3197 3271 -1 257 258 61 0 chr4 7288093 7288159 -195040188 - MIR SINE MIR -70 192 123 342 265 62 37 chr4 7288931 7289093 -195039254 - MIR SINE MIR -86 176 11 1205 229 5 0 chr4 7289131 7289354 -195038993 - MER58A DNA MER1_type 0 224 1 206 246 49 0 chr4 7290098 7290159 -195038188 - MIR SINE MIR -87 121 58 308 221 213 52 chr4 7290401 7290537 -195037810 - MIR SINE MIR -91 171 14 2252 103 0 0 chr4 7290798 7291109 -195037238 + AluSx SINE Alu 1 311 -1 403 323 43 12 chr4 7291357 7291518 -195036829 + MER63A DNA MER1_type 42 207 -3 1503 186 130 6 chr4 7291962 7292284 -195036063 - MLT1A1 LTR MaLR -3 362 1 204 311 78 0 chr4 7292366 7292469 -195035878 + L2 LINE L2 2623 2733 -581 773 237 121 16 chr4 7292700 7292957 -195035390 - MER46C DNA MER2_type -29 309 26 2354 127 48 17 chr4 7292959 7293375 -195034972 + Tigger2a DNA MER2_type 1 429 -5 190 308 158 14 chr4 7293617 7293763 -195034584 + L2 LINE L2 2989 3155 -117 795 278 75 4 chr4 7293820 7294061 -195034286 - MIR SINE MIR -1 261 4 446 302 85 0 chr4 7294274 7294486 -195033861 - L1MC4a LINE L1 -1905 5903 5674 2203 125 0 0 chr4 7294504 7294816 -195033531 - AluSx SINE Alu 0 312 1 538 253 70 54 chr4 7294863 7295104 -195033243 - L1MC4a LINE L1 -2272 5536 5292 594 325 96 49 chr4 7295125 7295661 -195032686 - L1MEc LINE L1 -1033 1261 13 2198 173 8 6 chr4 7296053 7296417 -195031930 + MLT1A1 LTR MaLR 1 365 0 1030 206 55 32 chr4 7296812 7297030 -195031317 - MER58A DNA MER1_type 0 224 2 242 347 107 0 chr4 7297082 7297203 -195031144 + Charlie8 DNA MER1_type 37 170 -2247 329 314 51 22 chr4 7297525 7297662 -195030685 - MIR3 SINE MIR -4 204 64 910 306 43 10 chr4 7300951 7301343 -195027004 - LTR16C LTR ERVL -5 486 82 935 245 17 12 chr4 7302759 7303000 -195025347 - MIR SINE MIR -7 255 14 196 300 33 0 chr4 7303090 7303150 -195025197 - MIR SINE MIR -55 153 92 405 338 25 6 chr4 7303724 7303884 -195024463 + MIR SINE MIR 20 182 -80 267 349 28 9 chr4 7304490 7304599 -195023748 - MIR SINE MIR -35 227 117 2014 137 0 13 chr4 7305062 7305376 -195022971 + AluJb SINE Alu 3 312 0 828 188 7 7 chr4 7305727 7305897 -195022450 + FRAM SINE Alu 1 167 0 427 269 9 99 chr4 7306135 7306347 -195022000 + MIR SINE MIR 25 217 -45 310 339 48 0 chr4 7306604 7306728 -195021619 + MIR SINE MIR 89 218 -44 202 289 66 0 chr4 7306914 7306990 -195021357 - MIR SINE MIR -77 185 105 189 0 0 0 chr4 7307675 7307696 -195020651 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 248 322 11 0 chr4 7307876 7307963 -195020384 + MIR SINE MIR 43 130 -132 343 306 30 0 chr4 7308303 7308437 -195019910 - MIR SINE MIR -12 250 113 492 137 0 14 chr4 7308437 7308510 -195019837 + AluS SINE Alu 2 73 -240 21 0 0 0 chr4 7309588 7309609 -195018738 + AT_rich Low_complexity Low_complexity 1 21 0 394 331 7 22 chr4 7310246 7310385 -195017962 + MIR SINE MIR 9 145 -117 198 318 91 0 chr4 7311101 7311189 -195017158 + L2 LINE L2 3214 3309 -4 * 343 305 49 58 chr4 7311185 7311408 -195016939 + L2 LINE L2 3022 3242 -30 243 125 0 0 chr4 7312670 7312710 -195015637 - MIR SINE MIR -62 146 107 796 274 69 17 chr4 7314354 7314881 -195013466 + MLT1H1 LTR MaLR 1 543 -12 216 281 0 0 chr4 7314891 7314955 -195013392 + MIR SINE MIR 77 140 -68 338 277 29 51 chr4 7316252 7316389 -195011958 + L1ME4a LINE L1 5762 5895 -226 249 321 54 9 chr4 7316404 7316516 -195011831 + L1ME4a LINE L1 5975 6091 -30 3553 194 42 45 chr4 7317032 7317081 -195011266 - Tigger6a DNA MER2_type -514 1083 1035 2169 133 3 3 chr4 7317081 7317382 -195010965 + AluSx SINE Alu 1 301 -11 3553 194 42 45 chr4 7317382 7317529 -195010818 - Tigger6a DNA MER2_type -562 1035 889 2236 117 0 7 chr4 7317529 7317828 -195010519 - AluJo SINE Alu -15 297 1 3553 194 42 45 chr4 7317828 7318400 -195009947 - Tigger6a DNA MER2_type -708 889 315 2091 146 16 11 chr4 7318400 7318763 -195009584 - MLT1A1 LTR MaLR 0 365 1 3553 194 42 45 chr4 7318763 7318854 -195009493 - Tigger6a DNA MER2_type -1282 315 225 1315 229 196 5 chr4 7319198 7319570 -195008777 - MLT1G1 LTR MaLR -2 593 151 867 176 0 0 chr4 7319817 7319959 -195008388 + AluSg/x SINE Alu 156 297 -15 453 296 145 65 chr4 7320061 7320289 -195008058 + L1ME4a LINE L1 5564 5772 -349 1862 189 40 11 chr4 7320289 7320664 -195007683 + MLT1B LTR MaLR 1 386 -4 453 296 145 65 chr4 7320664 7320945 -195007402 + L1ME4a LINE L1 5772 6114 -7 498 217 99 41 chr4 7321483 7321728 -195006619 + MLT1I LTR MaLR 1 205 -204 265 327 13 27 chr4 7322088 7322238 -195006109 - MIR SINE MIR -51 211 64 1911 108 0 15 chr4 7322403 7322663 -195005684 + AluSx SINE Alu 55 310 -2 395 315 138 26 chr4 7322665 7323056 -195005291 + L1MC5 LINE L1 7454 7888 -73 476 259 146 23 chr4 7324153 7324373 -195003974 + MIR SINE MIR 7 253 -9 459 289 115 24 chr4 7375040 7375293 -194953054 - LTR16C LTR ERVL -108 383 108 2341 98 0 3 chr4 7375293 7375600 -194952747 - AluSx SINE Alu -5 307 2 360 257 110 7 chr4 7375605 7375741 -194952606 + MER31-int LTR ERV1 3155 3304 -1632 261 263 113 45 chr4 7376100 7376233 -194952114 + MIR SINE MIR 51 192 -70 1967 198 55 34 chr4 7376386 7376600 -194951747 - MER66B LTR ERV1 -2 484 276 1912 58 91 0 chr4 7376600 7376841 -194951506 - AluSg SINE Alu -47 263 1 1967 198 55 34 chr4 7376841 7377100 -194951247 - MER66B LTR ERV1 -210 276 1 245 29 29 0 chr4 7377667 7377701 -194950646 + (CA)n Simple_repeat Simple_repeat 2 36 0 381 280 11 0 chr4 7377702 7377795 -194950552 + L2 LINE L2 3206 3299 -14 233 225 56 45 chr4 7379088 7379177 -194949170 + MLT1K LTR MaLR 337 426 -162 356 339 24 2 chr4 7379361 7379499 -194948848 + MIR SINE MIR 11 143 -65 428 220 10 0 chr4 7379682 7379782 -194948565 + L1MB3 LINE L1 5639 5739 -432 2315 85 10 0 chr4 7379782 7380077 -194948270 + AluSg SINE Alu 1 298 -12 1483 174 21 76 chr4 7380079 7380282 -194948065 + L1MB3 LINE L1 5823 5997 -186 2250 86 0 0 chr4 7380282 7380572 -194947775 - AluSx SINE Alu -22 290 1 1483 174 21 76 chr4 7380572 7380748 -194947599 + L1MB3 LINE L1 5997 6181 -2 26 64 0 0 chr4 7383223 7383270 -194945077 + GC_rich Low_complexity Low_complexity 1 47 0 234 0 0 0 chr4 7385889 7385915 -194942432 + (CA)n Simple_repeat Simple_repeat 2 27 0 310 313 12 0 chr4 7388347 7388430 -194939917 - L1M4c LINE L1 -1352 5605 5522 8555 247 48 30 chr4 7388432 7388834 -194939513 - L1M4c LINE L1 -1478 5479 5085 2630 62 0 3 chr4 7388834 7389141 -194939206 - AluY SINE Alu -5 306 1 8555 247 48 30 chr4 7389141 7391673 -194936674 - L1M4c LINE L1 -1872 5085 2350 2350 117 3 0 chr4 7391673 7391980 -194936367 - AluSx SINE Alu -4 308 1 8555 247 48 30 chr4 7391980 7393135 -194935212 - L1M4c LINE L1 -4607 2350 1217 21 0 0 0 chr4 7393140 7393161 -194935186 + AT_rich Low_complexity Low_complexity 1 21 0 2235 96 4 0 chr4 7393163 7393444 -194934903 + AluSx SINE Alu 1 282 -30 364 280 38 0 chr4 7393457 7393573 -194934774 - L1M4c LINE L1 -1339 7514 2527 329 348 0 0 chr4 7393493 7393582 -194934765 + L1MC4 LINE L1 6614 6702 -1340 * 321 230 81 0 chr4 7393715 7393789 -194934558 - L1M4c LINE L1 -4355 2602 2523 * 326 274 0 53 chr4 7393776 7393871 -194934476 - L1MC4 LINE L1 -1339 6703 6614 262 333 130 10 chr4 7393871 7394063 -194934284 - L1M4c LINE L1 -5612 1243 1029 373 271 50 71 chr4 7394332 7394572 -194933775 - L1M4c LINE L1 -6614 245 11 364 273 36 43 chr4 7394681 7394820 -194933527 - MIR3 SINE MIR -62 146 9 1291 107 0 0 chr4 7394923 7395082 -194933265 - AluSx SINE Alu -153 159 1 2240 107 13 0 chr4 7395090 7395388 -194932959 - AluSq SINE Alu -11 302 1 613 261 75 0 chr4 7395403 7395683 -194932664 + L1M4 LINE L1 3030 3330 -2816 192 305 146 12 chr4 7395908 7395990 -194932357 + L2 LINE L2 3180 3272 0 530 231 31 0 chr4 7396163 7396293 -194932054 + MLT1C-int LTR MaLR 1238 1371 0 744 199 65 15 chr4 7396293 7396494 -194931853 + MLT1C LTR MaLR 1 211 -256 2523 173 29 13 chr4 7396522 7396978 -194931369 - MLT1C LTR MaLR 0 467 5 2941 194 9 5 chr4 7397268 7397824 -194930523 - L1MB3 LINE L1 0 6183 5626 231 217 0 0 chr4 7398341 7398401 -194929946 + (CA)n Simple_repeat Simple_repeat 1 60 0 2417 89 3 19 chr4 7399082 7399396 -194928951 - AluSq SINE Alu -4 309 1 309 159 0 43 chr4 7400165 7400234 -194928113 - MLT1F1 LTR MaLR 0 567 502 417 305 96 6 chr4 7400234 7400583 -194927764 - L1MB3 LINE L1 -655 5507 5126 439 119 0 0 chr4 7400621 7400680 -194927667 + AluS SINE Alu 2 60 -250 1403 139 5 14 chr4 7400723 7400938 -194927409 + AluSg/x SINE Alu 68 280 -32 948 74 7 20 chr4 7400940 7401089 -194927258 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 455 309 14 34 chr4 7401089 7401296 -194927051 - L1MB3 LINE L1 -1059 5087 4885 394 317 70 20 chr4 7401386 7401585 -194926762 + L1MC4a LINE L1 5681 5889 -1919 2372 101 3 0 chr4 7401587 7401895 -194926452 + AluSq SINE Alu 1 309 -4 2146 98 7 18 chr4 7401897 7402231 -194926116 + AluSq SINE Alu 1 331 0 366 255 35 41 chr4 7402616 7402761 -194925586 - L1ME4a LINE L1 -12 6109 5966 4048 80 51 0 chr4 7402908 7403435 -194924912 + MER41A LTR ERV1 1 554 0 4301 212 97 65 chr4 7403520 7405374 -194922973 + MER41A-int LTR ERV1 1 2017 -3929 330 59 59 0 chr4 7405370 7405421 -194922926 + MER41A-int LTR ERV1 2167 2220 -3726 * 3134 123 62 46 chr4 7405417 7405824 -194922523 + MER41A-int LTR ERV1 3355 3754 -4062 2280 112 0 3 chr4 7405824 7406119 -194922228 + AluSg SINE Alu 1 294 -16 3134 123 62 46 chr4 7406119 7406222 -194922125 + MER41A-int LTR ERV1 3754 3854 -3962 2192 126 7 0 chr4 7406222 7406523 -194921824 + AluSq SINE Alu 1 303 -10 3134 123 62 46 chr4 7406523 7406551 -194921796 + MER41A-int LTR ERV1 3854 3880 -3936 2190 122 0 7 chr4 7406551 7406847 -194921500 + AluSx SINE Alu 1 294 -18 3134 123 62 46 chr4 7406847 7407228 -194921119 + MER41A-int LTR ERV1 3880 4417 -3399 11498 85 32 26 chr4 7407262 7407886 -194920461 + MER41A-int LTR ERV1 4191 4810 -1136 1975 167 0 0 chr4 7407886 7408180 -194920167 + AluSx SINE Alu 1 294 -18 11498 85 32 26 chr4 7408180 7409299 -194919048 + MER41A-int LTR ERV1 4810 5944 -2 4013 85 43 0 chr4 7409299 7409830 -194918517 + MER41A LTR ERV1 1 554 0 922 120 6 78 chr4 7410266 7410433 -194917914 + FRAM SINE Alu 1 40 0 789 223 54 0 chr4 7410458 7410642 -194917705 + MER58A DNA MER1_type 3 196 -28 260 281 152 22 chr4 7410856 7411126 -194917221 + LTR16A LTR ERVL 146 450 0 592 301 15 41 chr4 7411149 7411415 -194916932 - L2 LINE L2 -528 2786 2528 2212 95 3 0 chr4 7411506 7411856 -194916491 + AluSx SINE Alu 1 351 0 1164 216 137 51 chr4 7412066 7412556 -194915791 - LTR55 LTR ERV -16 532 1 330 310 75 12 chr4 7412565 7412900 -194915447 + L1 LINE L1 4295 4650 -1496 265 169 31 31 chr4 7412979 7413044 -194915303 + L1ME LINE L1 5714 5778 -343 857 172 0 0 chr4 7413071 7413205 -194915142 + AluJo SINE Alu 3 136 -176 6183 115 11 8 chr4 7413212 7414312 -194914035 + L1P4 LINE L1 4352 5457 -711 306 111 0 0 chr4 7414413 7414458 -194913889 - Alu SINE Alu -254 45 1 2120 74 0 40 chr4 7414486 7414782 -194913565 + AluSx SINE Alu 1 284 -28 1383 68 0 62 chr4 7414782 7414818 -194913529 + AluSq SINE Alu 1 320 0 192 305 12 24 chr4 7415555 7415637 -194912710 - MIR SINE MIR -118 144 64 1090 272 100 37 chr4 7415819 7416301 -194912046 + MLT1E3 LTR MaLR 1 512 -112 238 219 0 47 chr4 7416302 7416366 -194911981 - MIR SINE MIR -66 196 136 36 73 0 10 chr4 7417026 7417052 -194911295 + GC_rich Low_complexity Low_complexity 1 26 -69 198 71 0 0 chr4 7417052 7417080 -194911267 + (CAG)n Simple_repeat Simple_repeat 1 28 0 36 73 0 10 chr4 7417080 7417149 -194911198 + GC_rich Low_complexity Low_complexity 26 95 0 217 267 0 67 chr4 7417187 7417322 -194911025 + G-rich Low_complexity Low_complexity 1 126 0 23 92 0 0 chr4 7417327 7417392 -194910955 + GC_rich Low_complexity Low_complexity 1 65 0 267 278 121 52 chr4 7418701 7418874 -194909473 + MIR3 SINE MIR 4 188 -20 1148 196 64 38 chr4 7418930 7419196 -194909151 + AluJb SINE Alu 1 273 -39 486 193 12 30 chr4 7419196 7419362 -194908985 + GA-rich Low_complexity Low_complexity 2 164 0 419 250 9 15 chr4 7419375 7419702 -194908645 + GA-rich Low_complexity Low_complexity 1 325 0 848 238 188 18 chr4 7420529 7420928 -194907419 - MLT1J LTR MaLR -32 479 13 314 262 58 29 chr4 7421081 7421184 -194907163 - MIR SINE MIR -110 152 47 952 243 56 31 chr4 7421242 7421652 -194906695 - MLT1D LTR MaLR -12 493 35 1768 114 144 0 chr4 7422160 7422424 -194905923 - AluSx SINE Alu 0 302 1 221 335 47 0 chr4 7423162 7423332 -194905015 + (CCCTG)n Simple_repeat Simple_repeat 1 178 0 205 196 0 22 chr4 7423618 7423664 -194904683 + (TGG)n Simple_repeat Simple_repeat 1 45 0 1994 139 0 3 chr4 7425413 7425707 -194902640 - AluJb SINE Alu -9 303 11 283 200 27 27 chr4 7425708 7425783 -194902564 + MIR SINE MIR 101 175 -87 1800 245 54 4 chr4 7425786 7426305 -194902042 + L1MB8 LINE L1 5625 6169 -9 2623 42 0 0 chr4 7426308 7426617 -194901730 - AluY SINE Alu -2 309 1 263 315 22 0 chr4 7426664 7426756 -194901591 - L2 LINE L2 -1 3312 3219 342 339 24 42 chr4 7426826 7426994 -194901353 - MIR SINE MIR -91 171 7 1167 213 84 3 chr4 7427260 7427556 -194900791 + MLT1C LTR MaLR 140 459 -8 2111 92 0 7 chr4 7427978 7428297 -194900050 + AluSx SINE Alu 1 317 0 1559 213 33 0 chr4 7428303 7428603 -194899744 + AluJb SINE Alu 3 312 0 311 253 208 7 chr4 7428692 7428846 -194899501 + MER117 DNA MER1_type 3 187 -10 1693 189 10 93 chr4 7429686 7430094 -194898253 + MLT1A2 LTR MaLR 1 374 0 2405 57 0 13 chr4 7430200 7430499 -194897848 - AluY SINE Alu -16 295 1 391 287 20 108 chr4 7430663 7430914 -194897433 + L2 LINE L2 2953 3181 -91 441 323 72 7 chr4 7431228 7431451 -194896896 - MIR SINE MIR 0 262 20 193 410 119 11 chr4 7431666 7431927 -194896420 - L2 LINE L2 -345 2969 2681 191 322 34 0 chr4 7432377 7432436 -194895911 - L2 LINE L2 -5 3267 3207 426 289 72 4 chr4 7432491 7432726 -194895621 - LTR33 LTR ERVL -36 485 235 631 246 7 0 chr4 7432736 7432878 -194895469 + MLT1C LTR MaLR 321 463 -4 1965 185 45 9 chr4 7433496 7433940 -194894407 - MLT1C LTR MaLR -7 460 1 267 241 207 31 chr4 7435127 7435250 -194893097 - MIR SINE MIR -45 163 24 1106 162 33 50 chr4 7435463 7435704 -194892643 - L1MA6 LINE L1 -2 6298 6062 313 130 4 2 chr4 7435704 7435953 -194892394 + AluJo SINE Alu 1 302 0 373 194 153 0 chr4 7435956 7436054 -194892293 - L1MA6 LINE L1 -225 6075 5963 2135 96 7 0 chr4 7436065 7436377 -194891970 - AluSg SINE Alu 0 314 1 1788 158 5 25 chr4 7436381 7436749 -194891598 - L1MA6 LINE L1 -871 5275 4915 1852 152 0 26 chr4 7437552 7437855 -194890492 + AluSx SINE Alu 1 295 -17 1365 208 31 0 chr4 7437860 7438177 -194890170 + MLT1C LTR MaLR 1 327 -140 * 1421 236 43 10 chr4 7438163 7438561 -194889786 + MER67A LTR ERV1 5 415 -128 696 117 175 73 chr4 7438563 7438700 -194889647 + AluJo SINE Alu 1 151 -161 552 103 0 0 chr4 7438723 7438801 -194889546 - AluJb SINE Alu -81 231 154 304 264 73 139 chr4 7438850 7439290 -194889057 + L2 LINE L2 2844 3254 -18 258 106 0 0 chr4 7439292 7439339 -194889008 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 364 355 49 16 chr4 7439786 7439969 -194888378 - L1ME4a LINE L1 -8 6113 5925 715 156 117 0 chr4 7440123 7440251 -194888096 + FLAM_C SINE Alu 1 143 0 575 115 52 125 chr4 7440375 7440567 -194887780 - MER53 DNA DNA -11 178 1 186 229 0 71 chr4 7440738 7440808 -194887539 - L2 LINE L2 -1 3312 3248 220 318 56 19 chr4 7440886 7440993 -194887354 + L2 LINE L2 3160 3270 -2 509 121 61 0 chr4 7442141 7442306 -194886041 + (TG)n Simple_repeat Simple_repeat 1 175 0 252 161 69 11 chr4 7442319 7442406 -194885941 + (TG)n Simple_repeat Simple_repeat 2 93 0 1673 170 4 0 chr4 7442857 7443128 -194885219 - AluSq SINE Alu -18 295 24 269 306 119 38 chr4 7443268 7443428 -194884919 + L2 LINE L2 2923 3095 -177 182 234 0 21 chr4 7444360 7444407 -194883940 - MIR SINE MIR -126 82 37 365 244 76 34 chr4 7445590 7445709 -194882638 + MIR SINE MIR 40 163 -99 304 315 100 15 chr4 7446371 7446501 -194881846 + MIR SINE MIR 52 192 -70 345 263 72 105 chr4 7446791 7446871 -194881476 + L2 LINE L2 3105 3186 -127 877 207 18 62 chr4 7446871 7447098 -194881249 - MER20 DNA MER1_type -2 217 1 345 263 72 105 chr4 7447098 7447226 -194881121 + L2 LINE L2 3186 3306 -7 222 142 62 7 chr4 7447266 7447330 -194881017 - MIR SINE MIR -62 146 108 182 290 16 32 chr4 7448502 7448564 -194879783 + L2 LINE L2 2718 2778 -536 * 558 217 45 18 chr4 7448546 7448691 -194879656 + MIR SINE MIR 33 170 -54 330 237 21 54 chr4 7449565 7449658 -194878689 + L2 LINE L2 3156 3245 -27 297 311 85 28 chr4 7450421 7450598 -194877749 - MIR SINE MIR -63 199 13 637 241 11 43 chr4 7450735 7450922 -194877425 - MIR SINE MIR -51 211 31 611 217 22 0 chr4 7451994 7452132 -194876215 + L1ME1 LINE L1 6025 6165 -1 1846 147 39 23 chr4 7452169 7452340 -194876007 - AluSx SINE Alu 0 312 132 207 0 0 0 chr4 7452340 7452363 -194875984 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1846 147 39 23 chr4 7452363 7452498 -194875849 - AluSx SINE Alu -180 132 1 631 373 71 0 chr4 7452498 7452755 -194875592 - L1M4 LINE L1 -2630 3516 3238 2159 126 7 0 chr4 7453401 7453711 -194874636 + AluSx SINE Alu 1 312 0 220 291 29 68 chr4 7453959 7454062 -194874285 - MIR3 SINE MIR -52 156 58 * 287 243 27 63 chr4 7454029 7454140 -194874207 + L2 LINE L2 3152 3258 -14 258 132 0 73 chr4 7454294 7454362 -194873985 + (CCCCG)n Simple_repeat Simple_repeat 1 63 0 295 253 87 105 chr4 7455398 7455675 -194872672 + L2 LINE L2 2813 3084 -188 2198 109 0 0 chr4 7455882 7456175 -194872172 - AluSx SINE Alu -19 293 1 1981 85 48 4 chr4 7456753 7457049 -194871298 - AluSq SINE Alu 0 308 1 1813 164 0 22 chr4 7457255 7457567 -194870780 + AluJb SINE Alu 1 305 -7 2068 110 7 3 chr4 7457576 7457868 -194870479 + AluSq SINE Alu 1 293 -20 242 73 24 0 chr4 7458781 7458822 -194869525 + (TG)n Simple_repeat Simple_repeat 1 42 0 367 345 79 0 chr4 7459016 7459181 -194869166 + MIR SINE MIR 48 225 -37 326 200 124 57 chr4 7460054 7460159 -194868188 + L2 LINE L2 3174 3285 -28 306 0 0 0 chr4 7460179 7460213 -194868134 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr4 7460841 7460861 -194867486 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 2468 123 31 14 chr4 7460863 7461221 -194867126 + THE1B LTR MaLR 1 364 0 275 315 120 0 chr4 7461763 7461871 -194866476 + L2 LINE L2 3144 3264 -8 329 298 168 8 chr4 7462231 7462362 -194865985 + L1ME4a LINE L1 5953 6104 -17 195 281 42 10 chr4 7462761 7462857 -194865490 - MIR SINE MIR -77 131 33 1576 180 68 22 chr4 7462957 7463025 -194865322 + MLT1B LTR MaLR 3 66 -324 1133 106 0 150 chr4 7463025 7463252 -194865095 - 7SK RNA RNA 0 193 1 1576 180 68 22 chr4 7463252 7463538 -194864809 + MLT1B LTR MaLR 66 373 -17 271 303 110 0 chr4 7463560 7463715 -194864632 - L3 LINE CR1 -111 1466 1295 199 305 63 21 chr4 7463798 7463893 -194864454 - L2 LINE L2 -212 3101 3003 1648 177 7 7 chr4 7463928 7464227 -194864120 - AluJo SINE Alu -12 300 2 182 37 37 0 chr4 7464227 7464254 -194864093 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 1722 144 38 17 chr4 7464299 7464590 -194863757 - AluJo SINE Alu -15 297 1 2153 51 44 7 chr4 7465362 7465671 -194862676 - AluY SINE Alu 0 319 1 1375 154 4 0 chr4 7465705 7465975 -194862372 - AluSx SINE Alu 0 328 58 429 288 11 33 chr4 7466205 7466432 -194861915 + CT-rich Low_complexity Low_complexity 1 222 0 467 266 0 12 chr4 7466698 7466867 -194861480 + GA-rich Low_complexity Low_complexity 1 167 0 457 309 53 0 chr4 7466976 7467128 -194861219 - MIR SINE MIR -73 189 30 264 308 98 49 chr4 7467535 7467821 -194860526 - L2 LINE L2 -52 3220 2921 * 338 280 150 24 chr4 7467818 7468025 -194860322 - L2 LINE L2 -529 2785 2553 180 367 60 60 chr4 7468498 7468697 -194859650 - L2 LINE L2 -42 3230 3032 410 288 88 12 chr4 7468733 7468903 -194859444 - MIR SINE MIR 0 262 80 193 331 39 47 chr4 7468880 7469007 -194859340 + MIR SINE MIR 41 166 -96 * 566 208 101 0 chr4 7468986 7469135 -194859212 + MER5A DNA MER1_type 26 189 0 427 282 63 14 chr4 7469156 7469298 -194859049 + MER5B DNA MER1_type 14 162 -16 613 219 27 27 chr4 7470247 7470393 -194857954 - L2 LINE L2 -1 3312 3167 236 360 56 8 chr4 7470728 7470853 -194857494 - L2 LINE L2 -39 3233 3103 436 306 19 32 chr4 7470964 7471121 -194857226 - MIR SINE MIR -99 163 9 963 213 54 77 chr4 7471668 7471710 -194856637 - MLT1A1 LTR MaLR -20 345 304 1664 171 0 49 chr4 7471710 7472015 -194856332 + AluJb SINE Alu 1 290 -22 963 213 54 77 chr4 7472015 7472325 -194856022 - MLT1A1 LTR MaLR -61 304 1 463 272 48 0 chr4 7472488 7472613 -194855734 + MIR SINE MIR 96 226 -36 189 238 0 0 chr4 7472935 7472977 -194855370 + MIR SINE MIR 112 153 -55 241 250 65 9 chr4 7473064 7473172 -194855175 - MER103 DNA DNA -47 119 6 231 342 40 20 chr4 7473433 7473582 -194854765 - L2 LINE L2 -527 2787 2636 404 211 22 0 chr4 7473763 7473853 -194854494 - MLT1I LTR MaLR -1 408 317 372 248 90 8 chr4 7473945 7474078 -194854269 - MLT1J2 LTR MaLR -240 210 67 382 287 16 25 chr4 7474939 7475061 -194853286 + L2 LINE L2 3180 3300 -13 777 79 0 0 chr4 7475061 7475175 -194853172 + (TGGA)n Simple_repeat Simple_repeat 1 114 0 231 250 14 14 chr4 7475658 7475730 -194852617 + LTR16C LTR ERVL 418 489 -2 298 289 12 0 chr4 7475767 7475850 -194852497 - L2 LINE L2 -276 3037 2954 757 245 0 16 chr4 7475850 7476042 -194852305 - MLT1A1 LTR MaLR 0 365 177 1489 133 3 98 chr4 7476043 7476428 -194851919 - MER4A LTR ERV1 0 664 257 375 165 94 0 chr4 7476428 7476513 -194851834 - MER4A LTR ERV1 -571 93 1 * 745 234 5 11 chr4 7476513 7476693 -194851654 - MLT1A1 LTR MaLR -186 179 1 1418 242 35 113 chr4 7476694 7477272 -194851075 - L2 LINE L2 -359 2955 2423 1654 261 60 12 chr4 7477479 7477961 -194850386 - MLT1D LTR MaLR 0 505 1 438 339 63 27 chr4 7478432 7478653 -194849694 - MIR SINE MIR -6 256 28 735 191 35 30 chr4 7478919 7479118 -194849229 + MLT2D LTR ERVL 208 407 -7 362 270 40 24 chr4 7479120 7479246 -194849101 + L1MC4 LINE L1 7785 7912 -130 237 234 0 0 chr4 7479246 7479293 -194849054 + (TG)n Simple_repeat Simple_repeat 2 48 0 321 299 76 35 chr4 7479313 7479457 -194848890 + L1MC4 LINE L1 6595 6744 -1298 303 248 38 29 chr4 7481048 7481153 -194847194 + L1ME3A LINE L1 5664 5769 -401 469 246 12 76 chr4 7481160 7481331 -194847016 + L1ME3A LINE L1 6006 6165 -5 929 160 7 7 chr4 7481378 7481528 -194846819 + FRAM SINE Alu 2 151 -15 339 403 31 13 chr4 7481825 7482143 -194846204 + L1MC/D LINE L1 5449 5772 -2036 2426 59 0 3 chr4 7482198 7482501 -194845846 + AluY SINE Alu 1 302 -9 798 96 52 0 chr4 7483535 7483650 -194844697 - L1PA11 LINE L1 0 6174 6054 520 259 109 10 chr4 7483698 7483899 -194844448 + MLT1C LTR MaLR 240 460 -7 843 155 20 85 chr4 7485221 7485306 -194843041 - MLT1B LTR MaLR -203 187 98 2246 119 0 0 chr4 7485306 7485616 -194842731 - AluSx SINE Alu -2 310 1 843 155 20 85 chr4 7485616 7485730 -194842617 - MLT1B LTR MaLR -292 98 1 760 321 4 20 chr4 7486428 7486680 -194841667 + MIR SINE MIR 15 262 0 1958 184 34 50 chr4 7487855 7488273 -194840074 - MLT2D LTR ERVL 0 414 4 475 253 266 0 chr4 7488680 7488838 -194839509 - MIR SINE MIR -25 237 38 499 146 115 0 chr4 7489006 7489102 -194839245 + MER53 DNA DNA 1 107 -82 208 254 111 0 chr4 7489450 7489513 -194838834 + MIR SINE MIR 113 182 -80 591 258 82 6 chr4 7489945 7490104 -194838243 + MIR SINE MIR 44 214 -48 536 342 127 39 chr4 7490234 7490515 -194837832 - L1ME4a LINE L1 -109 6012 5757 2444 53 0 13 chr4 7490515 7490818 -194837529 - AluY SINE Alu -12 299 1 536 342 127 39 chr4 7490818 7491011 -194837336 - L1ME4a LINE L1 -364 5757 5485 23 68 0 0 chr4 7491154 7491198 -194837149 + AT_rich Low_complexity Low_complexity 1 44 0 301 310 84 40 chr4 7491626 7491724 -194836623 + L1M4 LINE L1 2924 3016 -3130 2162 106 3 3 chr4 7491724 7492026 -194836321 - AluSc SINE Alu -7 302 1 301 310 84 40 chr4 7492026 7492472 -194835875 + L1M4 LINE L1 3016 3492 -2654 203 79 26 0 chr4 7493240 7493278 -194835069 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 238 121 35 35 chr4 7493297 7493355 -194834992 + GA-rich Low_complexity Low_complexity 1 58 0 428 331 95 63 chr4 7493798 7494145 -194834202 + L3 LINE CR1 1146 1503 -74 498 330 77 27 chr4 7494307 7494568 -194833779 + MLT1L LTR MaLR 101 374 -241 312 234 0 0 chr4 7495594 7495658 -194832689 - MIR SINE MIR -121 141 78 711 154 18 0 chr4 7496045 7496214 -194832133 + (TCCA)n Simple_repeat Simple_repeat 1 172 0 821 139 23 0 chr4 7496229 7496402 -194831945 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 576 190 18 0 chr4 7496424 7496647 -194831700 + (TCCA)n Simple_repeat Simple_repeat 1 227 0 697 151 30 0 chr4 7496662 7496828 -194831519 + (TCCA)n Simple_repeat Simple_repeat 2 172 0 272 349 84 44 chr4 7496974 7497249 -194831098 - L2 LINE L2 -173 3099 2814 271 282 104 37 chr4 7498284 7498422 -194829925 - MIR SINE MIR -59 149 13 377 82 0 87 chr4 7498993 7499177 -194829170 + (CACCT)n Simple_repeat Simple_repeat 3 170 0 1786 143 0 0 chr4 7499271 7499529 -194828818 - AluSx SINE Alu -11 301 44 238 95 0 24 chr4 7499561 7499603 -194828744 + Alu SINE Alu 130 170 -133 2252 76 0 19 chr4 7499809 7500123 -194828224 + AluSg SINE Alu 1 308 -2 2349 63 0 16 chr4 7500594 7500897 -194827450 - AluY SINE Alu -13 298 1 238 320 0 0 chr4 7502498 7502573 -194825774 + C-rich Low_complexity Low_complexity 2 76 0 236 213 25 41 chr4 7503364 7503486 -194824861 + (CGG)n Simple_repeat Simple_repeat 2 121 0 231 123 15 77 chr4 7503548 7503678 -194824669 + (CGG)n Simple_repeat Simple_repeat 2 123 0 281 306 37 0 chr4 7504143 7504251 -194824096 - MIR SINE MIR -135 127 16 227 400 100 5 chr4 7505357 7505577 -194822770 + L2 LINE L2 2470 2710 -604 212 308 128 26 chr4 7505661 7505778 -194822569 + L2 LINE L2 2934 3062 -251 201 196 22 43 chr4 7505887 7505933 -194822414 - MIR SINE MIR -216 46 2 184 300 14 29 chr4 7506035 7506105 -194822242 + MER5A DNA MER1_type 7 75 -114 180 235 147 0 chr4 7506219 7506287 -194822060 - MER5A DNA MER1_type -95 94 17 368 378 65 5 chr4 7506492 7506693 -194821654 - MIR SINE MIR -40 222 10 554 241 106 6 chr4 7508466 7508636 -194819711 - MER5A DNA MER1_type -2 187 1 21 0 0 0 chr4 7508673 7508694 -194819653 + AT_rich Low_complexity Low_complexity 1 21 0 1911 196 102 35 chr4 7508696 7509216 -194819131 - L1MB3 LINE L1 -3 6180 5616 1880 121 15 0 chr4 7509216 7509481 -194818866 - AluJb SINE Alu -18 294 26 1911 196 102 35 chr4 7509481 7509538 -194818809 - L1MB3 LINE L1 -567 5616 5564 223 351 77 24 chr4 7511027 7511195 -194817152 + MIR SINE MIR 37 213 -49 2544 52 0 0 chr4 7511715 7512023 -194816324 - AluY SINE Alu -3 308 1 242 228 101 13 chr4 7512711 7512790 -194815557 - MIR SINE MIR -60 148 63 321 290 32 11 chr4 7513890 7513983 -194814364 + MIR SINE MIR 51 145 -63 597 213 107 6 chr4 7516988 7517157 -194811190 + MER5A DNA MER1_type 1 186 -3 24 32 0 0 chr4 7517221 7517252 -194811095 + AT_rich Low_complexity Low_complexity 1 31 0 2340 70 0 0 chr4 7517635 7517920 -194810427 + AluSc SINE Alu 3 287 -22 2158 109 0 13 chr4 7518245 7518557 -194809790 - AluSq SINE Alu -5 308 1 736 160 146 7 chr4 7518838 7518982 -194809365 + MER46A DNA MER2_type 1 164 -72 1060 167 171 42 chr4 7518997 7519284 -194809063 + MER7A DNA MER2_type 24 345 -1 334 192 55 0 chr4 7519284 7519357 -194808990 + MER46A DNA MER2_type 159 235 -1 23 0 0 0 chr4 7520211 7520234 -194808113 + AT_rich Low_complexity Low_complexity 1 23 0 472 332 142 0 chr4 7521582 7521877 -194806470 - L2 LINE L2 -982 2332 1996 228 318 114 15 chr4 7522019 7522151 -194806196 + MIR SINE MIR 13 157 -105 237 33 0 0 chr4 7522612 7522642 -194805705 + (TA)n Simple_repeat Simple_repeat 2 31 0 2276 64 0 17 chr4 7522643 7522938 -194805409 - AluY SINE Alu -21 290 1 1762 156 31 0 chr4 7523223 7523512 -194804835 - AluJb SINE Alu -14 298 1 213 108 0 0 chr4 7524614 7524651 -194803696 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 1532 137 129 0 chr4 7524662 7524925 -194803422 - AluSx SINE Alu -15 297 1 809 181 29 23 chr4 7524935 7525106 -194803241 - AluJo SINE Alu -24 288 117 2109 95 3 20 chr4 7525368 7525672 -194802675 + AluSp SINE Alu 10 308 -5 1888 62 0 19 chr4 7525981 7526240 -194802107 - AluY SINE Alu -13 298 45 1474 185 10 27 chr4 7526548 7526840 -194801507 + AluJb SINE Alu 1 287 -25 319 280 110 8 chr4 7527572 7527690 -194800657 + L2 LINE L2 3143 3272 0 191 275 0 0 chr4 7527722 7527762 -194800585 - L2 LINE L2 -12 3301 3262 2293 78 0 10 chr4 7528213 7528509 -194799838 - AluSg SINE Alu -17 293 1 2306 93 0 0 chr4 7528910 7529210 -194799137 - AluSx SINE Alu -12 300 1 321 288 117 0 chr4 7529350 7529461 -194798886 + MIR3 SINE MIR 33 156 -52 316 330 69 12 chr4 7529723 7529896 -194798451 - MIR SINE MIR -64 198 16 1874 104 42 21 chr4 7530989 7531278 -194797069 - AluSc SINE Alu -14 295 1 185 313 48 0 chr4 7531772 7531855 -194796492 + MIR SINE MIR 154 240 -22 1901 120 46 0 chr4 7535377 7535661 -194792686 - AluSg SINE Alu -13 297 1 1707 184 0 9 chr4 7536079 7536394 -194791953 + AluJb SINE Alu 1 312 0 2289 89 0 3 chr4 7536494 7536796 -194791551 + AluSg SINE Alu 1 301 -9 266 190 16 38 chr4 7537026 7537210 -194791137 + (TG)n Simple_repeat Simple_repeat 1 180 0 494 199 11 43 chr4 7537302 7537488 -194790859 + (TG)n Simple_repeat Simple_repeat 1 180 0 285 198 31 43 chr4 7537442 7537604 -194790743 + (GTGTG)n Simple_repeat Simple_repeat 1 160 0 * 437 214 21 24 chr4 7537531 7537921 -194790426 + (TG)n Simple_repeat Simple_repeat 1 388 0 722 270 97 68 chr4 7537961 7537991 -194790356 + L1MC5 LINE L1 7422 7450 -511 2050 114 0 14 chr4 7537991 7538288 -194790059 - AluSg SINE Alu -17 293 1 2006 158 0 0 chr4 7538294 7538604 -194789743 - AluJb SINE Alu -2 310 1 722 270 97 68 chr4 7538604 7539062 -194789285 + L1MC5 LINE L1 7454 7931 -30 449 165 247 0 chr4 7539085 7539182 -194789165 + AluJb SINE Alu 174 294 -18 2214 104 0 10 chr4 7541936 7542245 -194786102 - AluSg1 SINE Alu -3 306 1 28 71 0 0 chr4 7543504 7543560 -194784787 + AT_rich Low_complexity Low_complexity 1 56 0 1791 182 3 0 chr4 7543601 7543903 -194784444 - AluJb SINE Alu -9 303 1 286 250 25 12 chr4 7544252 7544332 -194784015 - MIR SINE MIR -56 206 126 853 167 20 0 chr4 7544348 7544533 -194783814 + AluSg/x SINE Alu 129 316 0 2091 102 7 0 chr4 7545899 7546202 -194782145 + AluY SINE Alu 1 305 -6 25 31 0 0 chr4 7547057 7547089 -194781258 + AT_rich Low_complexity Low_complexity 1 32 0 543 267 82 19 chr4 7547242 7547448 -194780899 - MER20 DNA MER1_type 0 219 1 2475 39 0 20 chr4 7547837 7548142 -194780205 - AluY SINE Alu -12 299 1 360 333 49 27 chr4 7548209 7548434 -194779913 + MIR SINE MIR 31 260 -2 542 286 38 72 chr4 7550657 7550919 -194777428 + MER112 DNA MER1_type 2 254 -2 366 322 6 76 chr4 7551017 7551112 -194777235 - MIR3 SINE MIR -50 158 132 2092 124 3 0 chr4 7551112 7551418 -194776929 + AluSx SINE Alu 1 307 -5 366 322 6 76 chr4 7551418 7551524 -194776823 - MIR3 SINE MIR -76 132 20 2281 82 3 0 chr4 7553110 7553414 -194774933 - AluY SINE Alu -6 305 1 227 228 101 13 chr4 7554102 7554181 -194774166 - MIR SINE MIR -60 148 63 307 290 32 11 chr4 7555281 7555374 -194772973 + MIR SINE MIR 51 145 -63 597 213 107 6 chr4 7558379 7558548 -194769799 + MER5A DNA MER1_type 1 186 -3 24 32 0 0 chr4 7558612 7558643 -194769704 + AT_rich Low_complexity Low_complexity 1 31 0 2340 70 0 0 chr4 7559026 7559311 -194769036 + AluSc SINE Alu 3 287 -22 2143 109 0 13 chr4 7559636 7559948 -194768399 - AluSq SINE Alu -5 308 1 227 228 101 13 chr4 7560635 7560714 -194767633 - MIR SINE MIR -60 148 63 307 290 32 11 chr4 7561814 7561907 -194766440 + MIR SINE MIR 51 145 -63 427 181 0 36 chr4 7566629 7566712 -194761635 - FLAM SINE Alu -17 126 47 282 182 0 18 chr4 7566849 7566904 -194761443 + Alu SINE Alu 240 293 -8 605 225 0 0 chr4 7567005 7567125 -194761222 + FLAM_A SINE Alu 20 139 -3 278 245 53 0 chr4 7567365 7567459 -194760888 - L1M4 LINE L1 -2573 3573 3475 810 217 44 6 chr4 7567777 7567957 -194760390 - MER5A DNA MER1_type 0 189 3 228 255 31 51 chr4 7567969 7568067 -194760280 + L2 LINE L2 3169 3264 -49 835 234 86 111 chr4 7568416 7568665 -194759682 - L1ME LINE L1 -5156 927 673 1944 129 3 7 chr4 7568665 7568960 -194759387 + AluJb SINE Alu 1 294 -18 2041 120 3 7 chr4 7568962 7569304 -194759043 + AluSx SINE Alu 1 312 0 835 234 86 111 chr4 7569304 7569619 -194758728 - L1ME LINE L1 -5411 672 400 402 153 0 0 chr4 7570067 7570126 -194758221 + AluS SINE Alu 17 75 -238 23 0 0 0 chr4 7570429 7570452 -194757895 + AT_rich Low_complexity Low_complexity 1 23 0 280 233 55 0 chr4 7571306 7571379 -194756968 - Tigger4(Zombi) DNA MER2_type -1 2730 2654 313 257 14 0 chr4 7571379 7571453 -194756894 - Tigger3(Golem) DNA MER2_type -1 3028 2954 365 303 68 25 chr4 7571716 7571878 -194756469 + MIR SINE MIR 20 188 -74 1530 218 166 12 chr4 7572147 7572629 -194755718 + L1MC4 LINE L1 6830 7385 -657 2391 70 0 0 chr4 7572634 7572935 -194755412 + AluY SINE Alu 6 306 -5 222 149 43 0 chr4 7573249 7573296 -194755051 + MIR SINE MIR 105 153 -55 626 276 22 0 chr4 7573448 7573629 -194754718 - AluSp SINE Alu -118 195 11 667 285 45 58 chr4 7573639 7573951 -194754396 + L2 LINE L2 3006 3313 0 234 200 0 0 chr4 7573968 7574013 -194754334 + L2 LINE L2 3210 3254 -18 1440 120 0 0 chr4 7574522 7574722 -194753625 + AluSg SINE Alu 1 200 -110 1258 201 0 12 chr4 7575425 7575674 -194752673 - AluJo SINE Alu -66 246 1 437 234 188 8 chr4 7575692 7575820 -194752527 - MLT1E1 LTR MaLR -503 151 1 1285 254 197 32 chr4 7575820 7576489 -194751858 - L2 LINE L2 -586 2728 1912 1722 113 45 0 chr4 7576489 7576755 -194751592 + AluSg SINE Alu 33 310 0 1285 254 197 32 chr4 7576755 7576863 -194751484 - L2 LINE L2 -1402 1912 1823 1301 155 9 13 chr4 7576863 7577095 -194751252 + AluJo SINE Alu 1 231 -81 259 109 0 43 chr4 7577135 7577181 -194751166 + AluJo SINE Alu 229 272 -30 400 247 79 39 chr4 7577185 7577363 -194750984 - L2 LINE L2 -1481 1833 1649 1449 127 0 0 chr4 7577576 7577788 -194750559 + AluSg/x SINE Alu 98 309 -1 1453 59 53 0 chr4 7578838 7579025 -194749322 + MER107 DNA MER1_type 1 197 0 402 200 265 6 chr4 7579062 7579232 -194749115 - L2 LINE L2 -1186 2128 1915 897 250 11 0 chr4 7579775 7579959 -194748388 - MER5A DNA MER1_type -3 186 1 535 138 0 12 chr4 7580215 7580295 -194748052 - AluJ/FLAM SINE Alu -232 80 2 730 178 0 0 chr4 7580296 7580431 -194747916 - MER4C LTR ERV1 -330 135 1 207 196 0 69 chr4 7581529 7581631 -194746716 + (CACAC)n Simple_repeat Simple_repeat 1 95 0 * 494 189 19 36 chr4 7581571 7581965 -194746382 + (CA)n Simple_repeat Simple_repeat 1 387 0 266 190 16 38 chr4 7582057 7582241 -194746106 + (CA)n Simple_repeat Simple_repeat 1 180 0 2098 123 0 0 chr4 7582471 7582772 -194745575 - AluSg SINE Alu -9 301 1 1975 161 0 0 chr4 7582778 7583088 -194745259 - AluJb SINE Alu -2 310 1 180 356 8 51 chr4 7583384 7583502 -194744845 - MIR SINE MIR -42 220 108 2177 105 3 0 chr4 7587897 7588201 -194740146 + AluSx SINE Alu 1 305 -7 216 97 0 0 chr4 7588444 7588475 -194739872 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 1002 190 51 0 chr4 7589082 7589277 -194739070 + MER3 DNA MER1_type 1 205 -4 228 289 195 6 chr4 7589450 7589609 -194738738 + L2 LINE L2 2910 3098 -215 256 315 108 0 chr4 7590180 7590291 -194738056 - MIR3 SINE MIR -26 182 60 399 262 210 15 chr4 7591589 7591860 -194736487 + L2 LINE L2 1005 1328 -1986 808 186 3 43 chr4 7591882 7592171 -194736176 + MLT1A1 LTR MaLR 1 347 -18 2228 94 3 19 chr4 7592171 7592489 -194735858 + AluSp SINE Alu 1 313 0 808 186 3 43 chr4 7592489 7592508 -194735839 + MLT1A1 LTR MaLR 347 365 0 4669 165 45 12 chr4 7592586 7593412 -194734935 + L1MC1 LINE L1 5481 6333 0 1425 99 0 0 chr4 7593444 7593626 -194734721 + AluSx SINE Alu 1 182 -130 736 312 67 10 chr4 7593903 7594217 -194734130 + L1ME3A LINE L1 5763 6094 -76 2115 89 3 16 chr4 7594703 7594870 -194733477 - AluSx SINE Alu -12 300 137 2184 88 3 3 chr4 7594870 7595165 -194733182 - AluY SINE Alu -16 295 1 2115 89 3 16 chr4 7595165 7595301 -194733046 - AluSx SINE Alu -175 137 1 320 277 62 4 chr4 7595579 7595695 -194732652 + MIR SINE MIR 30 148 -62 1945 120 43 10 chr4 7595760 7596059 -194732288 + AluSg SINE Alu 1 309 -1 356 324 35 28 chr4 7596143 7596288 -194732059 - L2 LINE L2 -1 3312 3167 675 249 23 34 chr4 7596363 7596540 -194731807 + MER5B DNA MER1_type 3 177 -1 2480 52 3 3 chr4 7596595 7596904 -194731443 - AluSp SINE Alu -4 309 1 346 326 0 0 chr4 7598718 7598816 -194729531 - L2 LINE L2 -208 3064 2967 234 291 89 0 chr4 7599070 7599149 -194729198 + MLT1J1 LTR MaLR 16 101 -345 248 281 117 41 chr4 7599150 7599321 -194729026 + MLT1J2 LTR MaLR 115 298 -152 2086 102 0 14 chr4 7600287 7600580 -194727767 - AluSx SINE Alu -23 289 1 269 322 63 21 chr4 7601001 7601144 -194727203 + MIR SINE MIR 80 228 -34 359 279 74 16 chr4 7601676 7601798 -194726549 - L2 LINE L2 -5 3308 3180 337 241 58 0 chr4 7601819 7601906 -194726441 + MER69 DNA AcHobo 2435 2526 0 261 225 234 0 chr4 7602012 7602123 -194726224 - Charlie8 DNA MER1_type -2245 172 36 1372 159 40 0 chr4 7603346 7603573 -194724774 + AluJb SINE Alu 42 277 -35 206 0 69 0 chr4 7603580 7603609 -194724738 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 336 48 0 0 chr4 7604045 7604087 -194724260 + (CA)n Simple_repeat Simple_repeat 1 42 0 1617 171 6 32 chr4 7604102 7604418 -194723929 - AluJo SINE Alu -4 308 1 2511 24 0 7 chr4 7604573 7604869 -194723478 - AluYa5 SINE Alu -17 294 1 1799 158 0 32 chr4 7605766 7606076 -194722271 - AluJb SINE Alu -12 300 1 2033 97 7 7 chr4 7609490 7609780 -194718567 - AluSx SINE Alu -22 290 1 574 93 0 0 chr4 7610296 7610371 -194717976 - AluJ/FRAM SINE Alu -8 304 230 623 143 0 36 chr4 7610571 7610683 -194717664 + AluSg/x SINE Alu 201 308 -2 2086 128 0 0 chr4 7610757 7611054 -194717293 - AluSx SINE Alu -15 297 1 192 308 115 8 chr4 7611914 7612044 -194716303 + L2 LINE L2 2811 2954 -318 188 295 33 82 chr4 7612286 7612408 -194715939 - MIR SINE MIR -79 183 68 277 270 37 0 chr4 7612752 7612844 -194715503 + MIR SINE MIR 69 164 -68 1142 84 0 0 chr4 7612877 7613019 -194715328 - AluSq/x SINE Alu -171 142 1 303 331 81 12 chr4 7613020 7613180 -194715167 - MIR SINE MIR -80 182 12 194 208 75 0 chr4 7613217 7613270 -194715077 - L2 LINE L2 -74 3198 3142 182 226 218 16 chr4 7613287 7613411 -194714936 + L2 LINE L2 2888 3036 -236 859 178 62 39 chr4 7613752 7613960 -194714387 + MER20 DNA MER1_type 7 219 0 258 264 91 36 chr4 7614154 7614264 -194714083 - MIR SINE MIR -140 122 7 261 220 0 0 chr4 7614325 7614375 -194713972 + L2 LINE L2 3137 3186 -86 194 243 0 81 chr4 7614765 7614839 -194713508 + MIR SINE MIR 75 142 -120 304 321 58 15 chr4 7615265 7615402 -194712945 - MIR SINE MIR -4 258 116 260 287 78 17 chr4 7615482 7615597 -194712750 - MIR SINE MIR -67 141 20 204 317 67 0 chr4 7615629 7615733 -194712614 - MER5A DNA MER1_type -42 147 37 184 42 0 0 chr4 7616280 7616304 -194712043 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1821 114 102 0 chr4 7616304 7616559 -194711788 - AluSx SINE Alu -1 304 1 2137 122 0 3 chr4 7618356 7618651 -194709696 - AluSx SINE Alu -18 294 1 311 291 88 11 chr4 7619026 7619151 -194709196 - MIR SINE MIR -68 140 51 700 224 68 6 chr4 7619353 7619514 -194708833 + FAM SINE Alu 2 172 -3 2424 93 0 0 chr4 7619575 7619875 -194708472 + AluSg SINE Alu 1 300 -10 1248 131 0 6 chr4 7619875 7620050 -194708297 + AluSg/x SINE Alu 132 305 -5 1678 176 13 20 chr4 7620064 7620370 -194707977 + AluJb SINE Alu 3 306 -6 2338 97 0 3 chr4 7620489 7620788 -194707559 + AluSq SINE Alu 1 298 -15 956 170 12 29 chr4 7621129 7621300 -194707047 + FRAM SINE Alu 1 167 -9 1282 164 9 13 chr4 7621440 7621650 -194706697 + AluJo SINE Alu 86 296 -16 2466 85 0 0 chr4 7621650 7621956 -194706391 + AluSg SINE Alu 1 306 -4 1282 164 9 13 chr4 7621956 7621971 -194706376 + AluJo SINE Alu 296 310 -2 2250 91 7 0 chr4 7622129 7622416 -194705931 + AluSq SINE Alu 7 295 -18 370 297 24 91 chr4 7622915 7623124 -194705223 + MIR SINE MIR 57 251 -11 186 152 0 0 chr4 7624089 7624122 -194704225 + L2 LINE L2 3021 3053 -260 2311 93 0 35 chr4 7625425 7625737 -194702610 - AluSq SINE Alu -12 301 1 352 246 169 27 chr4 7625888 7626071 -194702276 - MIR SINE MIR -26 236 28 2375 99 3 0 chr4 7626509 7626812 -194701535 - AluSx SINE Alu -8 304 1 1719 137 56 14 chr4 7627419 7627587 -194700760 - AluJb SINE Alu -15 297 111 180 0 0 0 chr4 7627587 7627607 -194700740 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1719 137 56 14 chr4 7627607 7627723 -194700624 - AluJb SINE Alu -201 111 1 277 255 122 20 chr4 7627991 7628089 -194700258 - MIR SINE MIR -131 131 24 2190 131 3 6 chr4 7628275 7628589 -194699758 + AluSq SINE Alu 1 313 0 797 328 8 0 chr4 7628623 7628864 -194699483 + MIR SINE MIR 20 262 0 240 258 21 43 chr4 7629032 7629125 -194699222 + MIR3 SINE MIR 112 202 -6 29 0 0 0 chr4 7629142 7629171 -194699176 + AT_rich Low_complexity Low_complexity 1 29 0 265 109 0 0 chr4 7629171 7629217 -194699130 - AluSc SINE Alu 0 299 254 444 268 150 0 chr4 7629408 7629561 -194698786 + MER5B DNA MER1_type 3 178 0 192 294 88 0 chr4 7629630 7629732 -194698615 - MIR SINE MIR -65 143 33 242 337 47 0 chr4 7629795 7629881 -194698466 + L2 LINE L2 3143 3232 -40 2105 141 0 3 chr4 7631573 7631886 -194696461 + AluJb SINE Alu 1 312 0 280 216 72 36 chr4 7631944 7632055 -194696292 - MIR3 SINE MIR -7 201 87 2337 83 3 25 chr4 7633336 7633650 -194694697 + AluY SINE Alu 1 307 -4 1961 157 3 0 chr4 7633791 7634091 -194694256 - AluJo SINE Alu -11 301 1 211 224 0 35 chr4 7634091 7634149 -194694198 - MIR SINE MIR -101 161 106 1719 149 39 62 chr4 7634325 7634482 -194693865 - AluJb SINE Alu -10 302 154 2060 112 42 3 chr4 7634482 7634767 -194693580 - AluSx SINE Alu -16 296 1 1719 149 39 62 chr4 7634767 7634918 -194693429 - AluJb SINE Alu -158 154 1 2363 94 0 16 chr4 7635480 7635788 -194692559 - AluSq SINE Alu -10 303 1 2224 125 0 0 chr4 7635791 7636088 -194692259 - AluSx SINE Alu -15 297 1 1074 150 0 0 chr4 7636418 7636578 -194691769 + AluSg/x SINE Alu 144 303 -6 2523 69 3 0 chr4 7636704 7637008 -194691339 + AluY SINE Alu 1 305 -6 2636 85 16 6 chr4 7637028 7637394 -194690953 + THE1C LTR MaLR 1 370 -5 1876 187 3 42 chr4 7637511 7637891 -194690456 - MLT1A1 LTR MaLR 0 365 1 180 313 0 0 chr4 7637956 7638004 -194690343 - L2 LINE L2 -596 2718 2671 2349 94 0 7 chr4 7638226 7638524 -194689823 - AluSq SINE Alu -17 296 1 2074 133 26 0 chr4 7638540 7638842 -194689505 - AluSx SINE Alu -2 310 1 1472 142 104 4 chr4 7639539 7639779 -194688568 - AluJo SINE Alu -12 300 37 377 265 99 88 chr4 7639806 7640089 -194688258 - L1MC5 LINE L1 -37 7924 7639 1929 138 7 10 chr4 7640605 7640901 -194687446 - AluJb SINE Alu -4 308 14 278 240 91 50 chr4 7641257 7641378 -194686969 - MIR SINE MIR -117 145 20 214 318 15 0 chr4 7642023 7642089 -194686258 + L2 LINE L2 3242 3308 -5 2025 153 59 50 chr4 7642248 7642479 -194685868 + MSTA LTR MaLR 1 239 -189 2406 96 0 0 chr4 7642479 7642771 -194685576 + AluSp SINE Alu 1 292 -21 2025 153 59 50 chr4 7642771 7642963 -194685384 + MSTA LTR MaLR 239 428 0 2278 93 101 25 chr4 7643271 7643669 -194684678 - MSTA LTR MaLR 0 428 1 2531 140 56 22 chr4 7646024 7646159 -194682188 + MER4C LTR ERV1 1 130 -335 1590 138 109 4 chr4 7646159 7646434 -194681913 + AluJb SINE Alu 1 304 -8 2531 140 56 22 chr4 7646434 7646748 -194681599 + MER4C LTR ERV1 130 465 0 340 282 40 16 chr4 7646756 7646880 -194681467 - MIR SINE MIR -56 206 80 2288 87 7 3 chr4 7646929 7647218 -194681129 - AluSx SINE Alu -20 292 3 560 240 157 23 chr4 7647268 7647485 -194680862 + MIR SINE MIR 17 262 0 362 199 202 17 chr4 7647869 7648004 -194680343 + AluSq SINE Alu 107 255 -48 1480 168 75 4 chr4 7648067 7648335 -194680012 + AluJo SINE Alu 2 288 -24 6965 131 38 26 chr4 7648337 7648546 -194679801 + HSMAR2 DNA Mariner 45 250 -1052 2383 96 0 10 chr4 7648546 7648848 -194679499 - AluSc SINE Alu -10 299 1 6965 131 38 26 chr4 7648848 7649881 -194678466 + HSMAR2 DNA Mariner 250 1301 -1 231 204 0 0 chr4 7651310 7651364 -194676983 + (CA)n Simple_repeat Simple_repeat 2 55 0 253 236 97 0 chr4 7653449 7653521 -194674826 - L2 LINE L2 -1 3312 3234 593 302 14 51 chr4 7654557 7654772 -194673575 + MIR SINE MIR 1 207 -55 291 347 75 17 chr4 7654770 7655064 -194673283 - L2 LINE L2 -618 2696 2386 * 237 0 0 0 chr4 7655182 7655210 -194673137 + MLT2A1 LTR ERVL 4 31 -413 2400 65 32 9 chr4 7655212 7655550 -194672797 + HERVL LTR ERVL 5113 5458 -196 420 67 0 0 chr4 7655550 7655610 -194672737 + (TATG)n Simple_repeat Simple_repeat 1 60 0 1938 104 0 0 chr4 7655610 7655850 -194672497 - AluSx SINE Alu -33 279 40 27 29 0 0 chr4 7658685 7658719 -194669628 + AT_rich Low_complexity Low_complexity 1 34 0 2563 72 0 0 chr4 7658719 7659025 -194669322 + AluY SINE Alu 1 306 -5 278 238 188 0 chr4 7659286 7659387 -194668960 + MIR SINE MIR 34 153 -55 212 281 22 45 chr4 7659487 7659517 -194668830 - MIR SINE MIR -70 192 163 2002 144 0 26 chr4 7659517 7659829 -194668518 - AluJo SINE Alu -8 304 1 212 281 22 45 chr4 7659829 7659887 -194668460 - MIR SINE MIR -99 163 106 244 281 34 22 chr4 7659945 7660034 -194668313 + L1ME4a LINE L1 5963 6052 -69 1202 144 0 11 chr4 7660047 7660234 -194668113 - AluSg/x SINE Alu -6 306 122 46 62 0 0 chr4 7660555 7660636 -194667711 + AT_rich Low_complexity Low_complexity 1 81 0 477 72 86 0 chr4 7660636 7660775 -194667572 + (TA)n Simple_repeat Simple_repeat 1 151 0 481 128 26 0 chr4 7660791 7660869 -194667478 + AluSc SINE Alu 214 293 -16 909 194 23 60 chr4 7660869 7661085 -194667262 - LTR8A LTR ERV1 -243 484 277 1152 140 0 0 chr4 7661199 7661377 -194666970 + MER41C LTR ERV1 377 554 0 189 273 18 0 chr4 7664684 7664739 -194663608 - MIR SINE MIR -48 214 159 2119 128 40 0 chr4 7664760 7665056 -194663291 + AluSx SINE Alu 1 308 -4 1082 214 72 7 chr4 7665307 7665611 -194662736 + MER33 DNA MER1_type 1 324 0 921 208 43 14 chr4 7666128 7666335 -194662012 - MIR SINE MIR -43 219 7 352 276 111 50 chr4 7666338 7666519 -194661828 - MIR SINE MIR -51 211 20 3432 135 19 19 chr4 7668690 7669259 -194659088 + L1MB4 LINE L1 5588 6156 -24 1908 133 77 17 chr4 7669272 7669624 -194658723 + THE1C LTR MaLR 1 373 -2 2095 128 0 6 chr4 7670153 7670465 -194657882 - AluSq SINE Alu -3 310 1 2312 65 0 20 chr4 7670972 7671287 -194657060 + AluY SINE Alu 1 311 0 1290 134 0 0 chr4 7671287 7671466 -194656881 + AluSg/x SINE Alu 134 312 0 1507 159 25 70 chr4 7671507 7671821 -194656526 + AluJo SINE Alu 1 300 -12 345 24 0 0 chr4 7671822 7671864 -194656483 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 314 227 21 31 chr4 7671875 7671972 -194656375 + L1ME4a LINE L1 5966 6061 -60 466 37 0 111 chr4 7672895 7672976 -194655371 + L1PA2 LINE L1 6084 6155 0 492 283 28 28 chr4 7673656 7673907 -194654440 + L1MCa LINE L1 1404 1654 -4772 * 836 88 1 33 chr4 7673888 7674026 -194654321 + L1PB1 LINE L1 5659 5791 -360 417 241 0 0 chr4 7674027 7674139 -194654208 + (TA)n Simple_repeat Simple_repeat 2 113 0 2515 106 11 16 chr4 7674139 7674516 -194653831 + L1PB1 LINE L1 5776 6150 -1 304 222 21 0 chr4 7674537 7674613 -194653734 + L1M1 LINE L1 2887 3288 -4278 1240 180 171 59 chr4 7674613 7674969 -194653378 + MSTD LTR MaLR 1 396 0 559 199 85 50 chr4 7675025 7675226 -194653121 + L1MCa LINE L1 2039 2246 -4361 307 248 8 26 chr4 7675235 7675352 -194652995 + L1M1 LINE L1 3557 3671 -3894 5843 170 21 24 chr4 7675473 7677287 -194651060 - L1PA16 LINE L1 -1 6165 4367 2266 113 0 0 chr4 7677323 7677624 -194650723 - AluSg1 SINE Alu -8 301 1 2772 229 132 21 chr4 7677679 7678230 -194650117 + L1M1 LINE L1 3661 4149 -3416 1762 98 8 16 chr4 7678230 7678474 -194649873 + AluY SINE Alu 1 242 -69 2772 229 132 21 chr4 7678474 7679163 -194649184 + L1M1 LINE L1 4149 5110 -2455 2521 56 3 3 chr4 7679163 7679465 -194648882 + AluY SINE Alu 1 302 -9 2772 229 132 21 chr4 7679465 7679559 -194648788 + L1M1 LINE L1 5110 5192 -2373 182 314 64 71 chr4 7680944 7681084 -194647263 + MIR3 SINE MIR 3 141 -67 1158 79 0 0 chr4 7681616 7681768 -194646579 + AluY SINE Alu 160 311 0 2223 109 0 7 chr4 7681908 7682210 -194646137 - AluSx SINE Alu -12 300 1 26 64 0 0 chr4 7682625 7682672 -194645675 + AT_rich Low_complexity Low_complexity 1 47 0 2245 116 0 10 chr4 7682807 7683110 -194645237 + AluSx SINE Alu 1 300 -12 1201 188 127 68 chr4 7683719 7684116 -194644231 - L1M4 LINE L1 -1479 4667 4141 2149 194 124 10 chr4 7684117 7684626 -194643721 - Cheshire DNA MER1_type -299 2121 1555 505 122 0 0 chr4 7684880 7684954 -194643393 + AluS SINE Alu 3 76 -234 285 271 156 65 chr4 7685342 7685682 -194642665 + MLT1K LTR MaLR 184 554 -34 2031 135 10 0 chr4 7686552 7686849 -194641498 - AluSx SINE Alu -12 300 1 198 0 0 0 chr4 7686946 7686968 -194641379 + (A)n Simple_repeat Simple_repeat 1 22 0 1978 149 0 0 chr4 7687217 7687506 -194640841 + AluJb SINE Alu 11 299 -13 288 191 135 11 chr4 7687508 7687597 -194640750 - HAL1 LINE L1 -871 1636 1537 226 260 153 33 chr4 7687769 7687919 -194640428 + MIR3 SINE MIR 20 187 -21 211 239 0 0 chr4 7688056 7688102 -194640245 - L2 LINE L2 -14 3299 3254 181 352 69 21 chr4 7688496 7688641 -194639706 - L2 LINE L2 -222 3050 2899 521 262 52 34 chr4 7689616 7689819 -194638528 - L2 LINE L2 0 3313 3104 1292 179 24 94 chr4 7689819 7690149 -194638198 + AluJo SINE Alu 5 311 -1 521 262 52 34 chr4 7690149 7690178 -194638169 - L2 LINE L2 -209 3104 3077 249 206 43 121 chr4 7690680 7690780 -194637567 - MIR SINE MIR -89 119 29 542 200 156 19 chr4 7691213 7691368 -194636979 - MIR SINE MIR -13 249 73 252 298 81 25 chr4 7691948 7692109 -194636238 + MIR SINE MIR 57 226 -36 198 0 0 0 chr4 7692220 7692242 -194636105 + (CA)n Simple_repeat Simple_repeat 1 22 0 392 272 19 0 chr4 7692246 7692349 -194635998 - MIR3 SINE MIR -22 186 82 647 305 59 25 chr4 7692959 7693313 -194635034 - L2 LINE L2 -28 3285 2920 243 0 0 0 chr4 7693571 7693598 -194634749 + (TG)n Simple_repeat Simple_repeat 2 28 0 229 286 76 17 chr4 7694160 7694279 -194634068 + MIR SINE MIR 63 188 -74 198 191 149 0 chr4 7694468 7694515 -194633832 + L2 LINE L2 3258 3311 -2 5072 64 0 5 chr4 7694860 7695500 -194632847 + L1PA6 LINE L1 5518 6154 0 1544 235 131 22 chr4 7695604 7696055 -194632292 + MLT1H1 LTR MaLR 43 542 -13 22 0 0 0 chr4 7696210 7696232 -194632115 + AT_rich Low_complexity Low_complexity 1 22 0 800 142 40 0 chr4 7696735 7696883 -194631464 + FRAM SINE Alu 22 175 -1 284 274 65 40 chr4 7696884 7697008 -194631339 - MIR SINE MIR -134 128 2 1797 128 0 4 chr4 7697309 7697559 -194630788 - AluJb SINE Alu -4 308 60 565 261 68 54 chr4 7698215 7698317 -194630030 - L2 LINE L2 -4 3309 3210 2334 97 0 0 chr4 7698317 7698615 -194629732 + AluSx SINE Alu 1 298 -14 565 261 68 54 chr4 7698615 7698792 -194629555 - L2 LINE L2 -103 3210 3026 524 197 146 0 chr4 7699263 7699400 -194628947 + L1ME3A LINE L1 6009 6165 -5 2470 77 0 13 chr4 7699612 7699924 -194628423 + AluSg SINE Alu 1 308 -2 238 229 16 33 chr4 7700015 7700076 -194628271 + MLT1K LTR MaLR 59 118 -470 2151 122 10 3 chr4 7700259 7700562 -194627785 + AluSx SINE Alu 1 305 -7 421 278 96 32 chr4 7700680 7700867 -194627480 + MIR SINE MIR 64 262 0 1492 276 128 25 chr4 7701486 7702193 -194626154 + L1MC4 LINE L1 7038 7951 -91 1234 175 44 0 chr4 7702193 7702467 -194625880 + L1MA4 LINE L1 6012 6297 -3 1492 276 128 25 chr4 7702467 7702570 -194625777 + L1MC4 LINE L1 7951 8042 0 1155 168 34 10 chr4 7702576 7702784 -194625563 - AluJb SINE Alu -16 296 84 1257 159 48 0 chr4 7704255 7704463 -194623884 + AluJo SINE Alu 85 302 -10 1010 114 0 0 chr4 7704873 7705005 -194623342 + FRAM SINE Alu 22 153 -23 246 105 0 0 chr4 7705355 7705393 -194622954 + (TC)n Simple_repeat Simple_repeat 1 38 0 1810 143 11 25 chr4 7705411 7705697 -194622650 - AluJb SINE Alu -30 282 1 24 0 0 0 chr4 7706812 7706836 -194621511 + AT_rich Low_complexity Low_complexity 1 24 0 716 237 6 34 chr4 7706954 7707131 -194621216 + FAM SINE Alu 2 173 -2 5723 17 0 2 chr4 7707528 7708165 -194620182 + L1PA3 LINE L1 5497 6132 -23 21 0 0 0 chr4 7709050 7709071 -194619276 + GC_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 7709081 7709109 -194619238 + GC_rich Low_complexity Low_complexity 1 28 0 851 161 99 6 chr4 7710723 7710885 -194617462 - FRAM SINE Alu 0 176 1 2294 95 14 0 chr4 7712012 7712307 -194616040 + AluSx SINE Alu 1 299 -13 307 250 33 42 chr4 7713997 7714117 -194614230 - MIR SINE MIR -116 146 28 320 275 130 0 chr4 7714216 7714347 -194614000 + MIR SINE MIR 63 210 -52 2187 115 0 0 chr4 7715573 7715861 -194612486 + AluSx SINE Alu 1 288 -24 2088 98 6 53 chr4 7716412 7716730 -194611617 + AluSq SINE Alu 1 303 -10 2252 112 0 7 chr4 7717352 7717657 -194610690 - AluSc SINE Alu -6 303 1 2427 49 3 3 chr4 7717686 7717970 -194610377 - AluY SINE Alu -16 295 12 1629 60 0 0 chr4 7718406 7718623 -194609724 + GSAT Satellite centromeric 1 217 0 754 123 13 175 chr4 7718858 7719086 -194609261 + 7SK RNA RNA 1 191 -2 2370 90 3 0 chr4 7719190 7719489 -194608858 + AluSx SINE Alu 1 300 -12 1779 159 68 3 chr4 7719497 7719850 -194608497 + L1MB3 LINE L1 5775 6150 -33 2188 108 31 0 chr4 7719934 7720221 -194608126 + AluSg SINE Alu 1 296 -14 429 273 46 41 chr4 7720234 7720377 -194607970 + L1ME3A LINE L1 5959 6105 -65 2338 111 0 0 chr4 7720377 7720684 -194607663 - AluSx SINE Alu -5 307 1 429 273 46 41 chr4 7720684 7720734 -194607613 + L1ME3A LINE L1 6105 6153 -17 236 292 202 6 chr4 7721165 7721333 -194607014 + L2 LINE L2 2558 2758 -556 192 355 11 32 chr4 7721484 7721577 -194606770 + L2 LINE L2 2928 3018 -254 360 278 102 24 chr4 7722161 7722366 -194605981 - MIR SINE MIR -34 228 8 202 275 110 28 chr4 7722846 7722955 -194605392 + L2 LINE L2 3150 3267 -5 197 318 136 45 chr4 7724659 7724857 -194603490 - MIR SINE MIR -26 236 21 1850 148 3 30 chr4 7725565 7725869 -194602478 + AluSx SINE Alu 4 299 -13 180 316 51 26 chr4 7726286 7726403 -194601944 - L2 LINE L2 -15 3257 3138 2324 108 0 13 chr4 7726962 7727098 -194601249 + AluSx SINE Alu 1 137 -175 2260 108 0 3 chr4 7727098 7727394 -194600953 + AluSg SINE Alu 1 295 -15 2324 108 0 13 chr4 7727394 7727564 -194600783 + AluSx SINE Alu 137 303 -9 691 191 37 0 chr4 7727903 7728039 -194600308 + FLAM_C SINE Alu 2 142 -1 253 257 147 9 chr4 7729818 7729934 -194598413 + MIR SINE MIR 45 177 -69 2402 83 7 0 chr4 7730254 7730555 -194597792 - AluSq SINE Alu -10 303 1 351 270 81 9 chr4 7733233 7733344 -194595003 - MIR SINE MIR -72 136 18 262 0 53 0 chr4 7733380 7733418 -194594929 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1993 133 0 4 chr4 7733423 7733702 -194594645 - AluSx SINE Alu -34 278 1 1601 153 8 4 chr4 7736303 7736544 -194591803 - AluJb SINE Alu -45 267 26 3321 39 11 27 chr4 7736644 7737085 -194591262 + MLT2A1 LTR ERVL 11 444 0 194 299 0 30 chr4 7737170 7737237 -194591110 - L2 LINE L2 -76 3196 3132 388 236 149 43 chr4 7738490 7738651 -194589696 - MER5B DNA MER1_type 0 178 1 496 335 62 0 chr4 7739107 7739301 -194589046 + MIR SINE MIR 27 232 -30 233 273 240 19 chr4 7739719 7739873 -194588474 - MIR SINE MIR -27 235 48 257 290 20 10 chr4 7740040 7740140 -194588207 + L2 LINE L2 2787 2887 -427 207 262 98 0 chr4 7740274 7740335 -194588012 + L2 LINE L2 3209 3275 -38 199 258 86 43 chr4 7740415 7740508 -194587839 + MIR SINE MIR 85 181 -81 291 261 118 25 chr4 7741254 7741373 -194586974 + MIR3 SINE MIR 47 176 -32 318 349 38 0 chr4 7742625 7742757 -194585590 + L2 LINE L2 3127 3263 -9 2037 158 0 3 chr4 7743062 7743372 -194584975 - AluJb SINE Alu -3 309 1 2285 114 3 0 chr4 7743705 7744002 -194584345 - AluSx SINE Alu -14 298 1 275 293 132 9 chr4 7745421 7745527 -194582820 + L2 LINE L2 3153 3271 -1 489 326 95 31 chr4 7745929 7746254 -194582093 + L2 LINE L2 2967 3312 -1 195 269 141 0 chr4 7746665 7746743 -194581604 + MIR SINE MIR 84 172 -90 261 253 0 25 chr4 7747338 7747417 -194580930 + L1ME LINE L1 5743 5819 -302 248 336 118 8 chr4 7747658 7747777 -194580570 + L2 LINE L2 3133 3264 -8 2467 90 0 3 chr4 7748922 7749232 -194579115 + AluSx SINE Alu 1 309 -3 2433 99 3 0 chr4 7749763 7750066 -194578281 - AluSx SINE Alu -8 304 1 405 185 32 140 chr4 7750611 7750629 -194577718 + L1MB3 LINE L1 5459 5477 -706 261 0 0 0 chr4 7750629 7750658 -194577689 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 405 185 32 140 chr4 7750658 7750796 -194577551 + L1MB3 LINE L1 5477 5598 -585 873 118 67 0 chr4 7750808 7750927 -194577420 + AluJo SINE Alu 9 135 -177 2867 134 8 102 chr4 7750929 7751176 -194577171 + L1MB3 LINE L1 5594 5863 -320 1830 132 40 0 chr4 7751176 7751449 -194576898 + AluJb SINE Alu 12 295 -17 2867 134 8 102 chr4 7751449 7751739 -194576608 + L1MB3 LINE L1 5863 6179 -4 2460 97 0 0 chr4 7751739 7752050 -194576297 - AluY SINE Alu 0 311 1 2382 101 0 0 chr4 7752052 7752348 -194575999 - AluSx SINE Alu -16 296 1 2867 134 8 102 chr4 7752348 7752364 -194575983 + L1MB3 LINE L1 6180 6085 -98 1573 187 61 0 chr4 7752364 7752642 -194575705 - AluJo SINE Alu -17 295 1 2867 134 8 102 chr4 7752642 7752733 -194575614 + L1MB3 LINE L1 6084 6182 -1 408 287 89 0 chr4 7753008 7753153 -194575194 - MIR SINE MIR -62 146 34 491 276 24 35 chr4 7753200 7753370 -194574977 + L3 LINE CR1 1408 1575 -2 235 194 328 0 chr4 7753369 7753436 -194574911 - MIR SINE MIR -82 126 38 * 790 271 34 78 chr4 7754117 7754530 -194573817 + L2 LINE L2 2919 3313 0 317 237 10 10 chr4 7754835 7754932 -194573415 - MIR SINE MIR -127 135 39 403 250 46 9 chr4 7755091 7755199 -194573148 + MIR3 SINE MIR 83 194 -14 2242 128 7 0 chr4 7755790 7756096 -194572251 + AluSx SINE Alu 5 312 0 313 221 0 12 chr4 7756162 7756248 -194572099 + MIR SINE MIR 39 123 -139 188 228 123 0 chr4 7756616 7756673 -194571674 - MIR SINE MIR -147 115 52 263 317 0 10 chr4 7757056 7757160 -194571187 - L3 LINE CR1 -56 1521 1419 278 291 43 8 chr4 7757741 7757858 -194570489 - L1ME4a LINE L1 -3 6118 5998 2253 132 0 0 chr4 7757912 7758223 -194570124 - AluSx SINE Alu -1 311 1 264 286 36 0 chr4 7758337 7758421 -194569926 - L2 LINE L2 -65 3248 3162 246 240 0 0 chr4 7758423 7758473 -194569874 - L1ME4a LINE L1 -2062 5746 5697 395 347 62 12 chr4 7758726 7758968 -194569379 - L3 LINE CR1 -106 1471 1218 183 340 85 0 chr4 7759413 7759507 -194568840 - L2 LINE L2 -47 3266 3165 199 307 35 18 chr4 7759688 7759802 -194568545 - L2 LINE L2 -324 2989 2874 388 293 27 20 chr4 7760106 7760253 -194568094 - L2 LINE L2 0 3272 3125 471 308 73 89 chr4 7760338 7760887 -194567460 - L1M4 LINE L1 -2738 3408 2754 214 235 12 74 chr4 7761380 7761461 -194566886 - MIR SINE MIR -15 247 172 257 227 0 45 chr4 7761696 7761762 -194566585 + MIR SINE MIR 83 145 -63 182 335 152 11 chr4 7762264 7762455 -194565892 - L2 LINE L2 -28 3244 3027 1765 201 105 20 chr4 7763548 7763877 -194564470 - L1MB5 LINE L1 0 6174 5797 1653 138 76 11 chr4 7763877 7764152 -194564195 - AluJb SINE Alu -19 293 1 1765 201 105 20 chr4 7764152 7764261 -194564086 - L1MB5 LINE L1 -377 5797 5699 532 208 88 0 chr4 7764262 7764387 -194563960 + MIR SINE MIR 102 237 -25 251 285 184 44 chr4 7764519 7764677 -194563670 - MIR SINE MIR -75 187 8 316 199 8 145 chr4 7764738 7764869 -194563478 + L1ME4a LINE L1 6008 6120 -1 323 260 17 81 chr4 7764967 7765140 -194563207 + L1ME4a LINE L1 5959 6120 -1 213 150 33 33 chr4 7765430 7765490 -194562857 + (CCCTG)n Simple_repeat Simple_repeat 1 60 0 251 323 71 0 chr4 7765643 7765742 -194562605 + L2 LINE L2 3205 3310 -3 * 378 307 0 0 chr4 7765738 7765839 -194562508 - MIR SINE MIR -99 163 63 392 239 0 0 chr4 7765955 7766047 -194562300 + MIR SINE MIR 28 119 -143 259 255 78 10 chr4 7767079 7767181 -194561166 + MIR SINE MIR 114 222 -40 2527 65 0 0 chr4 7767266 7767560 -194560787 + AluY SINE Alu 1 294 -17 195 265 235 0 chr4 7767594 7767692 -194560655 + MIR SINE MIR 20 140 -68 226 310 0 14 chr4 7768519 7768593 -194559754 + MIR SINE MIR 71 144 -64 235 349 0 8 chr4 7769024 7769150 -194559197 + GA-rich Low_complexity Low_complexity 1 125 0 326 270 135 0 chr4 7770172 7770283 -194558064 + LTR16C LTR ERVL 84 209 -282 208 123 15 46 chr4 7770473 7770538 -194557809 + T-rich Low_complexity Low_complexity 3 65 0 2445 46 0 20 chr4 7770552 7770858 -194557489 + AluY SINE Alu 1 300 -11 1738 146 0 7 chr4 7770860 7771134 -194557213 - AluSx SINE Alu -40 272 1 1988 184 38 25 chr4 7771143 7771359 -194556988 - L1MB7 LINE L1 0 6184 5972 2429 58 0 13 chr4 7771359 7771670 -194556677 - AluY SINE Alu -4 307 1 1988 184 38 25 chr4 7771670 7771802 -194556545 - L1MB7 LINE L1 -212 5972 5826 2058 120 10 0 chr4 7771802 7772111 -194556236 - AluSx SINE Alu 0 312 1 1988 184 38 25 chr4 7772111 7772206 -194556141 - L1MB7 LINE L1 -358 5826 5734 763 197 8 0 chr4 7772353 7772485 -194555862 + FLAM_A SINE Alu 1 133 0 1606 176 12 56 chr4 7772511 7772835 -194555512 + AluJb SINE Alu 3 312 0 545 172 15 15 chr4 7772838 7772972 -194555375 + GA-rich Low_complexity Low_complexity 2 135 0 2852 84 7 5 chr4 7773080 7773506 -194554841 + L1P5 LINE L1 5365 5791 -360 326 371 0 0 chr4 7773528 7773617 -194554730 + L1MC4 LINE L1 6615 6703 -1339 2517 80 14 11 chr4 7773620 7773981 -194554366 + L1PB1 LINE L1 5782 6143 -8 34 42 0 0 chr4 7774012 7774060 -194554287 + AT_rich Low_complexity Low_complexity 1 48 0 1875 113 0 0 chr4 7774727 7774984 -194553363 - AluSq SINE Alu -56 257 1 1722 149 13 17 chr4 7774988 7775289 -194553058 - AluJb SINE Alu -12 300 1 1326 220 48 43 chr4 7775939 7776458 -194551889 + MER51C LTR ERV1 3 564 -76 1815 108 0 0 chr4 7776800 7777049 -194551298 - AluSg SINE Alu -61 249 1 741 205 13 0 chr4 7777050 7777201 -194551146 + L1MB5 LINE L1 6021 6173 -1 1391 136 45 0 chr4 7777201 7777439 -194550908 + L1MB3 LINE L1 5926 6178 -5 397 115 0 0 chr4 7777527 7777588 -194550759 + L1MC2 LINE L1 6271 6331 -13 192 118 0 0 chr4 7777684 7777693 -194550654 + (TTAGGG)n Simple_repeat Simple_repeat 2 10 -25 7543 43 0 2 chr4 7777693 7779188 -194549159 + L1PA5 LINE L1 4662 6154 0 192 118 0 0 chr4 7779188 7779212 -194549135 + (TTAGGG)n Simple_repeat Simple_repeat 9 35 0 1694 175 83 6 chr4 7779305 7779653 -194548694 - MLT1E2 LTR MaLR -6 620 246 21 0 0 0 chr4 7779660 7779681 -194548666 + GC_rich Low_complexity Low_complexity 1 21 0 766 184 20 169 chr4 7779711 7780054 -194548293 - MLT1E2 LTR MaLR -334 292 1 2164 100 0 3 chr4 7780451 7780752 -194547595 - AluSx SINE Alu -12 300 1 1633 86 16 19 chr4 7781447 7781703 -194546644 - MER51C LTR ERV1 -1 639 385 447 216 8 36 chr4 7782604 7782979 -194545368 + (CA)n Simple_repeat Simple_repeat 1 364 0 233 254 0 0 chr4 7783000 7783067 -194545280 + (CA)n Simple_repeat Simple_repeat 2 68 0 385 239 16 6 chr4 7783095 7783416 -194544931 + (CA)n Simple_repeat Simple_repeat 1 324 0 198 302 47 0 chr4 7783590 7783676 -194544671 + L2 LINE L2 3182 3271 -1 201 260 30 50 chr4 7783772 7783872 -194544475 + G-rich Low_complexity Low_complexity 2 99 0 217 261 31 0 chr4 7784286 7784351 -194543996 + MIR SINE MIR 113 179 -83 251 119 0 0 chr4 7784604 7784646 -194543701 + L2 LINE L2 3012 3053 -219 228 275 103 101 chr4 7785045 7785646 -194542701 + L1MC/D LINE L1 5260 5864 -1944 2250 97 0 0 chr4 7785646 7785945 -194542402 + AluSx SINE Alu 1 299 -13 228 275 103 101 chr4 7785945 7785975 -194542372 + L1MC/D LINE L1 5864 5892 -1916 1907 145 86 17 chr4 7786203 7786270 -194542077 + L1MB3 LINE L1 5798 5859 -324 2376 82 0 0 chr4 7786270 7786575 -194541772 - AluY SINE Alu -6 305 1 1907 145 86 17 chr4 7786575 7786866 -194541481 + L1MB3 LINE L1 5859 6181 -2 242 311 17 3 chr4 7786877 7787002 -194541345 - MIR SINE MIR -50 212 48 221 232 195 0 chr4 7787559 7787641 -194540706 + L2 LINE L2 3199 3296 -17 2145 186 23 49 chr4 7787707 7788180 -194540167 + MLT1C LTR MaLR 7 467 0 225 328 64 8 chr4 7788502 7788627 -194539720 - MIR SINE MIR -80 182 51 3941 157 18 17 chr4 7788778 7789435 -194538912 - L1MB7 LINE L1 -7 6177 5520 868 303 50 54 chr4 7789602 7790025 -194538322 - MLT1J LTR MaLR -78 433 13 234 0 0 0 chr4 7790103 7790129 -194538218 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 1890 127 58 0 chr4 7790264 7790555 -194537792 - AluSx SINE Alu -4 308 1 188 300 57 43 chr4 7790662 7790732 -194537615 - L2 LINE L2 -1 3312 3242 222 226 19 0 chr4 7790869 7790922 -194537425 - MIR SINE MIR -76 132 79 271 248 88 29 chr4 7791098 7791138 -194537209 + L1MC/D LINE L1 3313 3349 -2797 2023 104 6 31 chr4 7791138 7791456 -194536891 + AluSx SINE Alu 1 310 -2 271 248 88 29 chr4 7791456 7791552 -194536795 + L1MC/D LINE L1 3349 3457 -2689 524 313 60 19 chr4 7791831 7792099 -194536248 + LTR16A LTR ERVL 165 443 -7 1078 93 0 0 chr4 7792166 7792305 -194536042 + AluSg SINE Alu 1 139 -171 242 276 41 20 chr4 7792863 7792961 -194535386 + MLT1J LTR MaLR 322 421 -90 1864 143 20 0 chr4 7793068 7793362 -194534985 - AluJo SINE Alu -12 300 1 21 0 0 0 chr4 7793676 7793697 -194534650 + AT_rich Low_complexity Low_complexity 1 21 0 276 275 46 37 chr4 7794281 7794390 -194533957 + MIR SINE MIR 33 142 -66 267 367 7 43 chr4 7794421 7794560 -194533787 + MIR SINE MIR 55 188 -74 519 279 7 15 chr4 7795136 7795272 -194533075 - MIR SINE MIR -62 200 66 221 309 0 0 chr4 7795621 7795676 -194532671 + GA-rich Low_complexity Low_complexity 3 57 0 389 308 89 16 chr4 7795839 7796086 -194532261 - L1MC4 LINE L1 -71 7971 7707 547 270 20 0 chr4 7796437 7796589 -194531758 + L1MC/D LINE L1 4890 5044 -1102 400 174 0 83 chr4 7796592 7796661 -194531686 + L1MC/D LINE L1 5372 5431 -928 2115 109 0 0 chr4 7796661 7796975 -194531372 + AluSx SINE Alu 1 314 0 400 174 0 83 chr4 7796975 7797013 -194531334 + L1MC/D LINE L1 5431 5471 -888 260 307 40 10 chr4 7797129 7797230 -194531117 + L1MC/D LINE L1 5475 5578 -766 426 321 114 25 chr4 7797241 7797615 -194530732 - LTR16A LTR ERVL -28 436 13 226 341 47 0 chr4 7797717 7797802 -194530545 + L2 LINE L2 3180 3268 -4 438 259 40 26 chr4 7797837 7798088 -194530259 + L2 LINE L2 2580 2944 -328 356 212 189 15 chr4 7798102 7798234 -194530113 - L2 LINE L2 -241 3072 2918 199 277 158 71 chr4 7798361 7798545 -194529802 + MIR SINE MIR 63 262 0 298 327 9 9 chr4 7798818 7798925 -194529422 + MIR SINE MIR 46 152 -56 232 293 51 32 chr4 7799085 7799242 -194529105 + L2 LINE L2 2818 2977 -336 1507 176 7 46 chr4 7799364 7799671 -194528676 - AluJo SINE Alu -17 295 1 474 344 54 0 chr4 7799759 7799983 -194528364 + MIR SINE MIR 8 243 -19 212 260 110 0 chr4 7800003 7800076 -194528271 + L2 LINE L2 3232 3312 -1 1761 271 34 6 chr4 7800188 7800694 -194527653 + MLT1H1 LTR MaLR 33 552 -3 2574 120 10 135 chr4 7800934 7801511 -194526836 - MLT1D LTR MaLR 0 505 1 183 348 174 0 chr4 7801511 7801626 -194526721 - MIR SINE MIR -81 181 47 411 283 121 53 chr4 7801784 7802106 -194526241 - LTR33 LTR ERVL -177 344 1 411 340 80 4 chr4 7802543 7802781 -194525566 - ERVL LTR ERVL -681 5083 4828 2053 205 34 18 chr4 7802786 7803227 -194525120 + MLT1C LTR MaLR 1 448 -19 400 187 27 0 chr4 7803227 7803302 -194525045 - MLT1A1 LTR MaLR -1 364 288 2240 119 0 0 chr4 7803303 7803732 -194524615 + AluSx SINE Alu 1 429 0 1041 176 129 24 chr4 7803732 7804006 -194524341 - MLT1A1 LTR MaLR -55 341 6 341 232 24 0 chr4 7804047 7804129 -194524218 - MER94 DNA DNA -50 84 1 1171 323 62 13 chr4 7804524 7804839 -194523508 - ERVL LTR ERVL -1346 4308 3955 1918 202 146 17 chr4 7804839 7805299 -194523048 + MLT2B1 LTR ERVL 2 520 0 1171 323 62 13 chr4 7805299 7805519 -194522828 - ERVL LTR ERVL -1699 3955 3747 425 307 84 18 chr4 7805560 7805785 -194522562 - LTR33 LTR ERVL -272 249 10 192 77 0 0 chr4 7806106 7806132 -194522215 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 302 271 138 9 chr4 7806192 7806402 -194521945 - L2 LINE L2 -245 3068 2832 330 267 145 35 chr4 7807896 7808105 -194520242 + MIR SINE MIR 38 256 -6 329 0 0 24 chr4 7808115 7808157 -194520190 + (CA)n Simple_repeat Simple_repeat 2 42 0 1766 179 82 9 chr4 7808295 7808635 -194519712 + MLT1A1 LTR MaLR 1 365 0 505 297 88 0 chr4 7809174 7809356 -194518991 + MIR SINE MIR 65 262 0 1930 243 118 21 chr4 7809400 7810184 -194518163 + MER45C DNA AcHobo 6 953 0 255 250 0 0 chr4 7810344 7810460 -194517887 + (CA)n Simple_repeat Simple_repeat 2 117 0 496 129 24 0 chr4 7811087 7811172 -194517175 + MIR SINE MIR 64 150 -112 460 276 35 52 chr4 7811386 7811560 -194516787 - MIR SINE MIR -70 192 22 225 221 13 39 chr4 7812189 7812266 -194516081 + (CGGGG)n Simple_repeat Simple_repeat 4 78 0 205 243 19 39 chr4 7812342 7812445 -194515902 + G-rich Low_complexity Low_complexity 4 104 0 28 29 0 0 chr4 7812513 7812548 -194515799 + GC_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr4 7812580 7812610 -194515737 + GC_rich Low_complexity Low_complexity 1 30 0 306 188 0 79 chr4 7812629 7812794 -194515553 + G-rich Low_complexity Low_complexity 6 157 0 220 241 149 0 chr4 7812895 7812982 -194515365 - MIR SINE MIR -115 147 48 231 235 59 0 chr4 7813950 7814018 -194514329 - MIR SINE MIR -74 188 117 235 267 59 20 chr4 7814412 7814513 -194513834 - L2 LINE L2 -257 3015 2911 1582 254 67 22 chr4 7815690 7816283 -194512064 + L2 LINE L2 2458 3082 -231 402 75 0 0 chr4 7816326 7816379 -194511968 + MSTB LTR MaLR 1 53 -373 2198 98 0 3 chr4 7816391 7816686 -194511661 + AluSq SINE Alu 13 306 -7 800 320 57 30 chr4 7816716 7817154 -194511193 + ERVL LTR ERVL 470 919 -4077 1206 209 54 26 chr4 7817195 7817641 -194510706 + MLT1B LTR MaLR 1 390 0 507 319 165 19 chr4 7817715 7818079 -194510268 + ERVL LTR ERVL 1124 1540 -3456 1957 124 16 22 chr4 7818084 7818371 -194509976 + AluSq SINE Alu 1 287 -26 1029 96 17 17 chr4 7818371 7818549 -194509798 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1957 124 16 22 chr4 7818549 7818575 -194509772 + AluSq SINE Alu 287 312 -1 588 136 32 26 chr4 7818575 7818729 -194509618 + GA-rich Low_complexity Low_complexity 1 155 0 903 110 24 12 chr4 7818768 7818932 -194509415 + GA-rich Low_complexity Low_complexity 1 166 0 935 275 42 0 chr4 7819005 7819245 -194509102 + ERVL LTR ERVL 1687 1936 -3060 854 222 76 28 chr4 7819247 7819550 -194508797 - MLT1F LTR MaLR -45 497 199 988 369 42 11 chr4 7819555 7820352 -194507995 + ERVL LTR ERVL 4509 5369 -395 719 209 83 109 chr4 7820494 7820694 -194507653 - MLT1G LTR MaLR -286 309 105 664 175 108 0 chr4 7820694 7820814 -194507533 + AluJo/FLAM SINE Alu 1 133 -169 1473 209 0 43 chr4 7820817 7821142 -194507205 + AluJo SINE Alu 1 311 -1 719 209 83 109 chr4 7821142 7821215 -194507132 - MLT1G LTR MaLR -492 103 72 5711 105 47 16 chr4 7821215 7822090 -194506257 + MER4D LTR ERV1 1 902 -1 719 209 83 109 chr4 7822090 7822159 -194506188 - MLT1G LTR MaLR -523 72 3 708 258 163 18 chr4 7822184 7822521 -194505826 - MLT1J2 LTR MaLR -45 405 20 213 200 20 0 chr4 7822937 7822987 -194505360 - MIR SINE MIR -138 124 74 297 279 70 0 chr4 7823000 7823086 -194505261 + MIR SINE MIR 59 150 -112 1802 155 3 7 chr4 7823088 7823384 -194504963 + AluJb SINE Alu 1 295 -17 28 29 0 0 chr4 7823854 7823889 -194504458 + GC_rich Low_complexity Low_complexity 1 35 0 322 298 0 66 chr4 7824176 7824297 -194504050 + MIR3 SINE MIR 42 154 -54 262 243 14 48 chr4 7824516 7824599 -194503748 + MIR SINE MIR 69 149 -59 341 243 180 9 chr4 7824617 7824728 -194503619 - MIR3 SINE MIR -65 143 14 324 203 158 40 chr4 7825641 7825818 -194502529 + MER102a DNA MER1_type 108 305 -25 330 261 61 17 chr4 7826275 7826390 -194501957 - MIR SINE MIR -110 152 33 539 225 9 9 chr4 7826532 7826643 -194501704 + L2 LINE L2 3201 3311 -2 260 270 36 22 chr4 7826744 7826881 -194501466 + L1MC4 LINE L1 7903 8041 -1 219 337 31 31 chr4 7826901 7826999 -194501348 - L2 LINE L2 -13 3300 3203 802 281 54 4 chr4 7827394 7827636 -194500711 + MIR SINE MIR 3 256 -6 1251 116 0 0 chr4 7827679 7827911 -194500436 + (CCA)n Simple_repeat Simple_repeat 1 232 0 1163 87 0 22 chr4 7827923 7828107 -194500240 + (CCA)n Simple_repeat Simple_repeat 1 180 0 699 164 0 48 chr4 7828123 7828312 -194500035 + (CCA)n Simple_repeat Simple_repeat 1 180 0 429 226 0 32 chr4 7828310 7828496 -194499851 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 * 310 304 105 49 chr4 7828548 7828755 -194499592 - MIR3 SINE MIR -41 221 12 214 315 99 43 chr4 7829781 7829943 -194498404 - MIR SINE MIR -44 218 48 421 307 67 32 chr4 7829993 7830182 -194498165 - MIR SINE MIR -43 219 20 2012 124 0 3 chr4 7831046 7831367 -194496980 - AluSx SINE Alu 0 320 1 319 119 34 0 chr4 7831415 7831474 -194496873 - FLAM_A SINE Alu -9 124 64 629 236 65 91 chr4 7831626 7832024 -194496323 - MLT1J2 LTR MaLR 0 450 63 543 246 5 64 chr4 7832024 7832211 -194496136 - MLT1J LTR MaLR -333 178 3 2303 207 105 18 chr4 7832272 7832939 -194495408 - MER50 LTR ERV1 0 734 10 277 250 52 86 chr4 7833010 7833126 -194495221 - MLT1L LTR MaLR -164 392 236 802 218 12 1 chr4 7833155 7833480 -194494867 - MER93b LTR ERV1 -8 365 1 240 316 0 13 chr4 7833507 7833583 -194494764 - MLT1L LTR MaLR -421 194 120 213 360 48 20 chr4 7834039 7834186 -194494161 + MIR SINE MIR 80 230 -32 1085 238 199 24 chr4 7834301 7834768 -194493579 - MLT1F1 LTR MaLR 0 567 19 1965 123 0 39 chr4 7834768 7835077 -194493270 - AluJo SINE Alu -4 308 12 1734 199 36 3 chr4 7835224 7835560 -194492787 + L1MB3 LINE L1 5834 6180 -3 205 191 0 0 chr4 7836417 7836459 -194491888 + T-rich Low_complexity Low_complexity 1 42 0 2117 118 0 16 chr4 7836472 7836787 -194491560 - AluSx SINE Alu -2 310 1 1423 177 3 79 chr4 7836840 7837168 -194491179 - MLT1B LTR MaLR -8 382 80 1922 110 45 0 chr4 7837170 7837460 -194490887 + AluSx SINE Alu 5 307 -5 255 314 25 17 chr4 7837472 7837590 -194490757 + L3 LINE CR1 1422 1540 -37 2077 127 3 7 chr4 7837961 7838268 -194490079 - AluSq SINE Alu -7 306 1 561 274 12 12 chr4 7838314 7838496 -194489851 - MIR SINE MIR -56 152 2 1651 162 45 10 chr4 7838525 7838815 -194489532 + AluJo SINE Alu 1 300 -12 1894 119 0 48 chr4 7838817 7839111 -194489236 + AluSx SINE Alu 1 280 -32 225 0 0 0 chr4 7839111 7839136 -194489211 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1954 152 10 0 chr4 7839594 7839891 -194488456 + AluSx SINE Alu 1 300 -12 807 243 111 10 chr4 7839980 7840268 -194488079 - LTR53 LTR ERVL -7 512 196 561 292 70 11 chr4 7840575 7840760 -194487587 - MIR SINE MIR -21 241 46 187 262 16 16 chr4 7840807 7840868 -194487479 + MIR SINE MIR 31 91 -171 247 233 23 23 chr4 7840939 7841025 -194487322 - MIR SINE MIR -7 255 170 1620 147 56 0 chr4 7841074 7841340 -194487007 + AluJo SINE Alu 11 291 -21 996 180 0 14 chr4 7841467 7841678 -194486669 - MER96B DNA MER1_type? -206 211 4 192 282 117 29 chr4 7841770 7841873 -194486474 - MIR SINE MIR -131 131 20 252 242 242 25 chr4 7842317 7842474 -194485873 + MIR SINE MIR 44 234 -28 717 289 32 56 chr4 7842484 7842733 -194485614 - MIR SINE MIR -4 258 16 35 41 0 0 chr4 7842794 7842843 -194485504 + AT_rich Low_complexity Low_complexity 1 49 0 1707 85 51 0 chr4 7842888 7843123 -194485224 + AluSx SINE Alu 1 247 -65 228 282 190 14 chr4 7843708 7843850 -194484497 + L2 LINE L2 2918 3084 -188 237 300 187 27 chr4 7843964 7844114 -194484233 + MIR SINE MIR 75 248 -14 1557 208 103 3 chr4 7844114 7844474 -194483873 - MSTD LTR MaLR 0 396 1 260 363 112 28 chr4 7846311 7846490 -194481857 + MIR SINE MIR 44 237 -25 255 226 0 0 chr4 7846741 7846794 -194481553 + MIR SINE MIR 91 143 -119 256 299 11 20 chr4 7847158 7847281 -194481066 + MIR SINE MIR 29 152 -56 536 291 101 5 chr4 7847304 7847503 -194480844 - MIR SINE MIR 0 262 45 248 242 264 22 chr4 7847656 7847747 -194480600 + MER81 DNA DNA 1 113 -1 1597 145 3 35 chr4 7847819 7848102 -194480245 - AluJo SINE Alu -7 305 32 2487 43 3 7 chr4 7848108 7848411 -194479936 + AluY SINE Alu 1 302 -9 189 313 40 30 chr4 7848729 7848828 -194479519 - L2 LINE L2 -341 2972 2873 350 171 29 0 chr4 7848987 7849057 -194479290 + MIR SINE MIR 73 144 -118 277 258 45 0 chr4 7849562 7849628 -194478719 - MIR SINE MIR -90 172 104 732 272 60 44 chr4 7849628 7849949 -194478398 - MER21B LTR ERV1 -78 785 471 2040 117 17 3 chr4 7849949 7850248 -194478099 + AluSq SINE Alu 1 303 -10 732 272 60 44 chr4 7850248 7850401 -194477946 - MER21B LTR ERV1 -392 471 98 439 214 0 31 chr4 7850441 7850539 -194477808 - MER21B LTR ERV1 -768 95 1 1618 204 64 3 chr4 7850958 7851302 -194477045 - MLT1A1 LTR MaLR 0 365 1 1912 161 0 19 chr4 7851392 7851703 -194476644 - AluJb SINE Alu -7 305 1 205 313 31 0 chr4 7852023 7852087 -194476260 - L2 LINE L2 0 3272 3207 590 279 29 17 chr4 7852306 7852478 -194475869 - L2 LINE L2 -4 3309 3136 195 311 73 0 chr4 7852801 7852952 -194475395 - L2 LINE L2 -299 2973 2812 220 266 49 152 chr4 7853486 7853670 -194474677 + L3 LINE CR1 1177 1341 -236 190 286 0 0 chr4 7854384 7854433 -194473914 - MIR3 SINE MIR -21 187 139 233 256 0 0 chr4 7854435 7854478 -194473869 + (CCCA)n Simple_repeat Simple_repeat 2 44 0 641 235 6 0 chr4 7854482 7854661 -194473686 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 242 221 15 29 chr4 7854849 7854917 -194473430 + GA-rich Low_complexity Low_complexity 3 69 0 4405 161 48 18 chr4 7855648 7855917 -194472430 - L1MB7 LINE L1 -9 6175 5916 1840 149 20 10 chr4 7855917 7855932 -194472415 - AluJb SINE Alu -14 298 285 189 0 0 0 chr4 7855932 7855953 -194472394 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1840 149 20 10 chr4 7855953 7856232 -194472115 - AluJb SINE Alu -27 285 1 4405 161 48 18 chr4 7856232 7856927 -194471420 - L1MB7 LINE L1 -268 5916 5183 387 335 62 6 chr4 7857260 7857436 -194470911 + MIR SINE MIR 22 207 -55 2306 94 0 0 chr4 7858885 7859184 -194469163 - AluSx SINE Alu -13 299 1 344 260 199 22 chr4 7859225 7859406 -194468941 + MIR SINE MIR 13 225 -37 212 284 25 25 chr4 7859429 7859510 -194468837 - MIR SINE MIR -181 81 1 474 229 76 0 chr4 7860111 7860229 -194468118 - MIR3 SINE MIR -24 184 58 1092 129 0 45 chr4 7860364 7860542 -194467805 + AluSg/x SINE Alu 134 303 -9 287 279 93 0 chr4 7860898 7860984 -194467363 - L2 LINE L2 0 3272 3179 420 271 104 70 chr4 7861511 7861894 -194466453 - MLT1K LTR MaLR -8 580 185 1569 171 59 14 chr4 7862034 7862321 -194466026 + AluJo SINE Alu 1 300 -12 318 233 0 0 chr4 7862321 7862381 -194465966 + G-rich Low_complexity Low_complexity 3 62 0 725 132 36 18 chr4 7862383 7862608 -194465739 + GA-rich Low_complexity Low_complexity 1 229 0 254 302 71 8 chr4 7862623 7862749 -194465598 + MIR3 SINE MIR 65 198 -10 281 326 109 0 chr4 7863171 7863318 -194465029 - MIR3 SINE MIR -21 187 25 214 341 35 0 chr4 7863520 7863605 -194464742 - L2 LINE L2 -51 3262 3175 187 374 36 0 chr4 7863730 7863813 -194464534 + L2 LINE L2 3137 3222 -50 884 168 0 31 chr4 7863845 7864006 -194464341 + AluJo SINE Alu 5 160 -152 1911 133 3 14 chr4 7864242 7864535 -194463812 + AluJo SINE Alu 1 290 -22 2140 122 0 0 chr4 7864535 7864831 -194463516 - AluSx SINE Alu -16 296 1 196 333 0 17 chr4 7864845 7864897 -194463450 - MER5B DNA MER1_type -52 126 76 244 328 117 14 chr4 7864897 7865038 -194463309 + MIR SINE MIR 3 156 -61 337 284 35 0 chr4 7865108 7865224 -194463123 - MLT1I LTR MaLR 0 409 290 388 185 33 0 chr4 7865309 7865401 -194462946 - MLT1I LTR MaLR -240 169 75 373 252 89 0 chr4 7865505 7865628 -194462719 + MIR SINE MIR 38 171 -91 2877 86 0 0 chr4 7865632 7865993 -194462354 - THE1B LTR MaLR -2 362 2 1608 175 3 30 chr4 7866400 7866575 -194461772 - AluSx SINE Alu -8 304 139 2233 96 0 7 chr4 7866575 7866877 -194461470 - AluSp SINE Alu -13 300 1 1608 175 3 30 chr4 7866877 7866998 -194461349 - AluSx SINE Alu -173 139 16 297 310 92 7 chr4 7867108 7867250 -194461097 + MIR SINE MIR 29 182 -80 199 292 46 46 chr4 7867715 7867780 -194460567 - MIR3 SINE MIR -33 175 111 243 346 98 0 chr4 7868391 7868544 -194459803 + MIR SINE MIR 59 226 -36 200 365 31 0 chr4 7869305 7869401 -194458946 + L2 LINE L2 3173 3271 -1 * 249 83 0 0 chr4 7869389 7869425 -194458922 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 2134 197 90 12 chr4 7870638 7871159 -194457188 + L1MB7 LINE L1 5601 6165 -19 2062 128 10 0 chr4 7871167 7871463 -194456884 - AluSx SINE Alu -13 299 1 1879 101 59 21 chr4 7871803 7872090 -194456257 + AluSx SINE Alu 1 298 -14 1744 166 17 7 chr4 7872103 7872398 -194455949 + AluJo SINE Alu 1 298 -14 1852 177 0 3 chr4 7872643 7872948 -194455399 - AluJo SINE Alu -1 311 8 267 104 0 0 chr4 7872957 7873005 -194455342 + (T)n Simple_repeat Simple_repeat 1 48 0 946 134 8 0 chr4 7873106 7873240 -194455107 + AluSq/x SINE Alu 1 135 -177 2311 85 3 0 chr4 7873240 7873534 -194454813 + AluSp SINE Alu 1 295 -18 207 0 0 0 chr4 7873534 7873557 -194454790 + (CA)n Simple_repeat Simple_repeat 2 24 0 1092 176 40 9 chr4 7873565 7873593 -194454754 - MLT1A1 LTR MaLR -2 363 337 2098 50 46 8 chr4 7873593 7873853 -194454494 + AluY SINE Alu 27 296 -15 1092 176 40 9 chr4 7873853 7874051 -194454296 - MLT1A1 LTR MaLR -28 337 130 1088 184 16 5 chr4 7874253 7874443 -194453904 + AluJb SINE Alu 43 234 -78 1885 138 3 7 chr4 7874512 7874795 -194453552 + AluJb SINE Alu 31 312 0 631 139 9 0 chr4 7875110 7875218 -194453129 - MLT1A1 LTR MaLR -256 109 1 2472 64 3 3 chr4 7875273 7875568 -194452779 + AluSp SINE Alu 1 295 -18 831 282 55 51 chr4 7875706 7875997 -194452350 + L1ME3A LINE L1 5370 5658 -512 1985 117 0 87 chr4 7875997 7876152 -194452195 + AluSx SINE Alu 1 114 -198 2524 46 0 0 chr4 7876152 7876471 -194451876 + AluY SINE Alu 1 319 0 1985 117 0 87 chr4 7876471 7876647 -194451700 + AluSx SINE Alu 114 304 -8 831 282 55 51 chr4 7876647 7876784 -194451563 + L1ME3A LINE L1 5658 5803 -367 903 250 5 0 chr4 7876784 7876972 -194451375 + MER5A DNA MER1_type 1 189 0 831 282 55 51 chr4 7876972 7877031 -194451316 + L1ME3A LINE L1 5803 5860 -310 293 19 74 0 chr4 7877048 7877102 -194451245 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 297 195 65 0 chr4 7877104 7877181 -194451166 + L1ME3A LINE L1 5869 5950 -220 1993 152 16 10 chr4 7877250 7877560 -194450787 + AluJb SINE Alu 1 312 0 532 131 9 9 chr4 7877562 7877669 -194450678 + (GGGAA)n Simple_repeat Simple_repeat 4 110 0 23 0 0 0 chr4 7877937 7877960 -194450387 + AT_rich Low_complexity Low_complexity 1 23 0 246 328 76 0 chr4 7878102 7878221 -194450126 + MLT1J LTR MaLR 1 128 -383 656 233 43 67 chr4 7878280 7878493 -194449854 + MLT1H1 LTR MaLR 309 517 -38 1851 164 3 7 chr4 7878493 7878786 -194449561 + AluJb SINE Alu 1 292 -20 656 233 43 67 chr4 7878786 7878825 -194449522 + MLT1H1 LTR MaLR 517 555 0 2536 73 0 13 chr4 7878993 7879307 -194449040 - AluY SINE Alu -1 310 1 655 269 0 0 chr4 7879838 7879994 -194448353 - MLT1A2 LTR MaLR -4 370 215 629 156 57 8 chr4 7880037 7880159 -194448188 + LTR31 LTR ERV1 1 128 -491 886 235 0 0 chr4 7880159 7880325 -194448022 - FRAM SINE Alu -10 166 1 3434 123 6 0 chr4 7880325 7880830 -194447517 + LTR31 LTR ERV1 112 619 0 926 233 5 9 chr4 7880830 7881045 -194447302 - MLT1A2 LTR MaLR -160 214 1 2143 157 89 33 chr4 7881134 7881352 -194446995 - MER66B LTR ERV1 -7 479 275 2174 122 0 3 chr4 7881352 7881646 -194446701 - AluSx SINE Alu -19 293 1 2143 157 89 33 chr4 7881646 7881878 -194446469 - MER66B LTR ERV1 -211 275 4 514 226 77 70 chr4 7882628 7882720 -194445627 + L1M4 LINE L1 2789 2879 -3267 2242 101 26 13 chr4 7882720 7883028 -194445319 - AluSq SINE Alu -1 312 1 514 226 77 70 chr4 7883028 7883297 -194445050 + L1M4 LINE L1 2879 3156 -2990 2147 132 7 0 chr4 7883297 7883593 -194444754 + AluSx SINE Alu 1 298 -14 514 226 77 70 chr4 7883593 7883633 -194444714 + L1M4 LINE L1 3156 3194 -2952 4642 161 36 7 chr4 7883817 7884677 -194443670 - L1MC1 LINE L1 -20 6313 5429 1730 86 49 34 chr4 7884737 7884781 -194443566 - MER4A LTR ERV1 0 664 622 13320 27 1 0 chr4 7884781 7887108 -194441239 + L1PA3 LINE L1 3828 6155 0 1730 86 49 34 chr4 7887108 7887624 -194440723 - MER4A LTR ERV1 -42 622 1 886 186 6 6 chr4 7888168 7888329 -194440018 + FRAM SINE Alu 1 161 -5 2594 71 0 0 chr4 7888355 7888666 -194439681 + AluY SINE Alu 1 311 0 1987 132 20 0 chr4 7888781 7889084 -194439263 - AluSx SINE Alu -1 311 3 1101 294 68 17 chr4 7891793 7892205 -194436142 + LTR16A LTR ERVL 8 440 -10 530 149 76 13 chr4 7892489 7892606 -194435741 - L1MD3 LINE L1 -125 7870 7694 1238 159 50 50 chr4 7892766 7893024 -194435323 - AluJb SINE Alu -13 299 42 641 212 0 8 chr4 7893052 7893184 -194435163 - FLAM_C SINE Alu -2 131 1 388 275 134 23 chr4 7893190 7893361 -194434986 - L1MC4a LINE L1 -1865 5943 5754 1868 130 0 4 chr4 7893592 7893882 -194434465 - AluSx SINE Alu 0 310 22 1272 255 101 13 chr4 7893935 7894311 -194434036 + MLT1I LTR MaLR 1 409 0 2440 67 100 0 chr4 7894671 7895012 -194433335 + THE1C LTR MaLR 1 375 0 193 357 88 39 chr4 7895033 7895316 -194433031 + L2 LINE L2 157 453 -2861 263 333 157 12 chr4 7895327 7895576 -194432771 - L2 LINE L2 -2186 1128 844 230 258 212 61 chr4 7895679 7895811 -194432536 - MIR SINE MIR -10 252 101 249 352 101 48 chr4 7895823 7896261 -194432086 - L2 LINE L2 -2493 821 361 268 230 46 35 chr4 7896444 7896531 -194431816 - LTR16B LTR ERVL -342 122 35 2590 65 0 0 chr4 7896934 7897240 -194431107 - AluY SINE Alu -5 306 1 1678 153 11 28 chr4 7897253 7897535 -194430812 - AluJb SINE Alu 0 312 36 495 211 83 0 chr4 7897862 7897971 -194430376 - MLT1F1 LTR MaLR -437 130 13 2407 130 77 70 chr4 7898039 7898291 -194430056 + MER66B LTR ERV1 1 250 -236 2148 123 3 7 chr4 7898291 7898593 -194429754 - AluSg SINE Alu -7 303 3 2222 117 3 7 chr4 7898595 7898893 -194429454 - AluSx SINE Alu -14 298 2 2407 130 77 70 chr4 7898893 7899120 -194429227 + MER66B LTR ERV1 250 486 0 341 283 87 60 chr4 7899131 7899315 -194429032 + L1M4 LINE L1 4214 4402 -1744 1396 206 151 8 chr4 7899333 7899731 -194428616 - MLT1C LTR MaLR -7 460 6 21 0 0 0 chr4 7899759 7899780 -194428567 + AT_rich Low_complexity Low_complexity 1 21 0 1991 162 0 10 chr4 7899966 7900274 -194428073 + AluJo SINE Alu 1 305 -7 1349 178 5 0 chr4 7900284 7900497 -194427850 + AluJb SINE Alu 1 214 -98 361 299 82 25 chr4 7900525 7900769 -194427578 + L1M4 LINE L1 4641 4898 -1248 2061 86 61 4 chr4 7900793 7901073 -194427274 + AluSc SINE Alu 8 303 -6 333 295 67 35 chr4 7901095 7901349 -194426998 + L1M4 LINE L1 4904 5165 -981 556 136 31 117 chr4 7901349 7901511 -194426836 + L1MB5 LINE L1 5682 5829 -345 2153 129 7 0 chr4 7901512 7901822 -194426525 + AluSx SINE Alu 1 312 0 953 175 6 0 chr4 7901828 7901994 -194426353 + MLT1B LTR MaLR 224 390 0 366 150 87 0 chr4 7902745 7902872 -194425475 + (CAGG)n Simple_repeat Simple_repeat 3 140 0 229 234 0 0 chr4 7903146 7903193 -194425154 + MIR SINE MIR 216 262 0 370 279 31 8 chr4 7903218 7903347 -194425000 + MLT1G LTR MaLR 10 141 -449 1700 160 43 69 chr4 7903372 7903527 -194424820 + MLT1A1 LTR MaLR 1 159 -206 2304 98 0 7 chr4 7903527 7903834 -194424513 + AluSc SINE Alu 1 305 -4 1700 160 43 69 chr4 7903834 7904053 -194424294 + MLT1A1 LTR MaLR 159 365 0 296 133 0 0 chr4 7904796 7904841 -194423506 + Alu SINE Alu 1 45 -255 251 175 53 35 chr4 7904818 7904896 -194423451 + AluYb8 SINE Alu 243 321 0 * 483 225 42 7 chr4 7904909 7905051 -194423296 + L1ME2 LINE L1 5944 6090 -74 293 253 103 11 chr4 7905208 7905295 -194423052 + MIR SINE MIR 79 173 -89 1644 179 3 35 chr4 7905529 7905851 -194422496 + AluJb SINE Alu 1 313 0 703 272 42 89 chr4 7906383 7906743 -194421604 + MLT1J LTR MaLR 6 348 -163 402 289 177 15 chr4 7906833 7907093 -194421254 + L2 LINE L2 2359 2660 -654 266 221 116 0 chr4 7907512 7907598 -194420749 + L2 LINE L2 2903 2998 -274 900 184 6 12 chr4 7907606 7907769 -194420578 - AluJb SINE Alu -17 295 134 2637 43 0 0 chr4 7907769 7908070 -194420277 - AluY SINE Alu -10 301 1 1614 166 29 37 chr4 7908073 7908423 -194419924 - MLT2C1 LTR ERVL -50 347 1 323 255 170 0 chr4 7909447 7909541 -194418806 - MIR SINE MIR -65 143 34 817 211 0 87 chr4 7910511 7910719 -194417628 - MIR SINE MIR -40 222 33 387 259 45 9 chr4 7910891 7911003 -194417344 - MIR SINE MIR -64 144 29 226 286 14 0 chr4 7911309 7911379 -194416968 + MIR SINE MIR 46 116 -92 604 273 0 0 chr4 7911621 7911753 -194416594 + MIR SINE MIR 15 146 -116 206 339 0 0 chr4 7911892 7911951 -194416396 - MIR SINE MIR -92 116 58 370 328 110 39 chr4 7912270 7912605 -194415742 - L2 LINE L2 -24 3248 2890 695 138 8 8 chr4 7912732 7912855 -194415492 - MLT1D LTR MaLR -374 131 9 543 265 162 5 chr4 7913034 7913219 -194415128 + MIR SINE MIR 48 261 -1 578 299 95 4 chr4 7914116 7914347 -194414000 + MIR SINE MIR 8 259 -3 1916 157 3 19 chr4 7914466 7914779 -194413568 + AluJo SINE Alu 1 308 -4 2848 145 19 0 chr4 7914784 7915254 -194413093 + L1MB3 LINE L1 5700 6178 -5 1841 106 0 0 chr4 7915279 7915516 -194412831 + AluSx SINE Alu 1 237 -75 803 106 15 0 chr4 7915528 7915660 -194412687 + (GAAA)n Simple_repeat Simple_repeat 3 136 0 2213 77 20 13 chr4 7916685 7916984 -194411363 - AluY SINE Alu -10 301 1 290 350 36 0 chr4 7917132 7917269 -194411078 + MIR SINE MIR 64 205 -57 372 346 104 37 chr4 7917349 7917933 -194410414 + L2 LINE L2 2626 3255 -17 27 29 0 0 chr4 7917991 7918025 -194410322 + AT_rich Low_complexity Low_complexity 1 34 0 1915 136 7 27 chr4 7918054 7918349 -194409998 - AluJo SINE Alu -17 295 7 2463 73 7 0 chr4 7918648 7918949 -194409398 + AluSc SINE Alu 1 303 -6 1553 180 74 0 chr4 7919781 7920065 -194408282 - AluJb SINE Alu -7 305 1 315 286 60 0 chr4 7920497 7920581 -194407766 + MIR SINE MIR 172 260 -2 2459 80 0 3 chr4 7920706 7921018 -194407329 - AluY SINE Alu 0 311 1 2215 116 3 3 chr4 7921018 7921319 -194407028 - AluSg SINE Alu -9 301 1 2125 142 6 6 chr4 7921494 7921805 -194406542 + AluJb SINE Alu 1 311 -1 35 0 0 0 chr4 7922101 7922136 -194406211 + AT_rich Low_complexity Low_complexity 1 35 0 1866 148 41 7 chr4 7922140 7922431 -194405916 - AluJb SINE Alu -10 302 2 2199 112 10 3 chr4 7922663 7922966 -194405381 - AluSx SINE Alu -7 305 1 2153 148 0 10 chr4 7923063 7923374 -194404973 - AluJb SINE Alu -2 310 3 2359 112 45 25 chr4 7923567 7923924 -194404423 + THE1B LTR MaLR 1 364 0 314 240 116 29 chr4 7923964 7924111 -194404236 - L1ME LINE L1 -302 5819 5660 534 207 140 61 chr4 7924341 7924429 -194403918 + MER45A DNA AcHobo 1 81 -1500 2457 76 13 3 chr4 7924429 7924733 -194403614 - AluY SINE Alu -4 307 1 534 207 140 61 chr4 7924733 7924808 -194403539 + MER45A DNA AcHobo 81 177 -1 200 98 0 49 chr4 7924903 7924944 -194403403 + (TTAA)n Simple_repeat Simple_repeat 2 40 0 463 337 28 29 chr4 7925468 7925720 -194402627 - MIR SINE MIR -6 256 3 208 265 0 0 chr4 7925725 7925774 -194402573 - L2 LINE L2 0 3313 3265 853 276 86 19 chr4 7925774 7926188 -194402159 - LTR16B LTR ERVL -26 438 11 671 267 165 43 chr4 7926223 7926782 -194401565 - L2 LINE L2 -122 3191 2702 1116 161 79 57 chr4 7926782 7926814 -194401533 + MER33 DNA MER1_type 2 32 -2553 2236 95 0 7 chr4 7926814 7927119 -194401228 - AluY SINE Alu 0 303 1 1116 161 79 57 chr4 7927119 7927346 -194401001 + MER33 DNA MER1_type 32 273 -2312 1476 229 14 0 chr4 7927346 7927638 -194400709 - AluJo SINE Alu -16 296 1 1116 161 79 57 chr4 7927638 7927692 -194400655 + MER33 DNA MER1_type 273 324 0 671 267 165 43 chr4 7927692 7927821 -194400526 - L2 LINE L2 -611 2702 2028 2200 137 0 0 chr4 7927989 7928289 -194400058 - AluSx SINE Alu -12 300 1 2057 129 13 20 chr4 7929235 7929537 -194398810 + AluJo SINE Alu 1 300 -12 2339 68 44 0 chr4 7929537 7929833 -194398514 + AluYa5 SINE Alu 1 309 -2 1769 166 10 3 chr4 7930310 7930599 -194397748 - AluJo SINE Alu -21 291 1 1942 207 16 58 chr4 7930680 7931167 -194397180 - MLT1C LTR MaLR 0 467 1 2297 96 0 0 chr4 7931432 7931735 -194396612 - AluSc SINE Alu -1 308 6 2196 102 0 0 chr4 7931771 7932076 -194396271 - AluSx SINE Alu 0 334 30 2273 111 3 0 chr4 7932147 7932445 -194395902 + AluSx SINE Alu 1 299 -13 911 155 67 21 chr4 7932871 7933065 -194395282 + MER3 DNA MER1_type 7 209 0 1662 176 59 3 chr4 7933154 7933443 -194394904 + AluJo SINE Alu 1 305 -7 472 255 220 56 chr4 7933786 7934123 -194394224 - LTR16A LTR ERVL 0 450 59 1325 203 0 81 chr4 7934624 7934945 -194393402 + AluJo SINE Alu 2 296 -6 216 0 0 0 chr4 7934952 7934976 -194393371 + (TA)n Simple_repeat Simple_repeat 2 25 0 180 0 0 0 chr4 7936677 7936697 -194391650 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 324 240 80 20 chr4 7936701 7936801 -194391546 - MER103 DNA DNA -46 120 15 329 193 44 104 chr4 7937620 7937755 -194390592 - L1M3c LINE L1 -4824 1317 1191 2443 82 0 13 chr4 7938208 7938514 -194389833 + AluY SINE Alu 9 310 -1 619 266 0 0 chr4 7938755 7938768 -194389579 - FLAM_A SINE Alu -174 128 116 492 62 0 0 chr4 7938768 7938832 -194389515 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 619 266 0 0 chr4 7938832 7938946 -194389401 - FLAM_A SINE Alu -185 117 1 2196 125 20 0 chr4 7939539 7939836 -194388511 + AluSx SINE Alu 1 303 -9 186 368 11 23 chr4 7940337 7940424 -194387923 + L2 LINE L2 3187 3272 0 601 291 42 42 chr4 7941050 7941311 -194387036 + MLT1I LTR MaLR 79 339 -70 6268 166 8 26 chr4 7941311 7943131 -194385216 + L1MA4A LINE L1 4125 5912 -391 262 140 70 18 chr4 7943133 7943190 -194385157 + L1MA4A LINE L1 6208 6267 -36 1927 159 0 7 chr4 7943191 7943492 -194384855 - AluJb SINE Alu -13 299 1 225 0 0 0 chr4 7943495 7943520 -194384827 + (T)n Simple_repeat Simple_repeat 1 25 0 297 192 96 0 chr4 7943520 7943593 -194384754 + MLT1I LTR MaLR 323 402 -7 768 158 267 0 chr4 7943982 7944147 -194384200 + MER3 DNA MER1_type 1 209 0 230 269 90 27 chr4 7944172 7944395 -194383952 + L1ME4a LINE L1 5862 6098 -23 2583 62 3 0 chr4 7945099 7945408 -194382939 - AluY SINE Alu -1 310 1 1974 144 3 19 chr4 7947084 7947396 -194380951 + AluJb SINE Alu 1 307 -5 262 296 169 35 chr4 7947804 7947946 -194380401 - L2 LINE L2 -20 3293 3133 496 209 82 38 chr4 7948010 7948168 -194380179 + MIR SINE MIR 39 203 -59 267 267 61 38 chr4 7948249 7948380 -194379967 - LTR16A1 LTR ERVL -59 398 265 995 275 131 31 chr4 7948384 7948872 -194379475 + MLT1F LTR MaLR 1 537 -5 368 269 91 21 chr4 7948882 7949087 -194379260 - LTR16A LTR ERVL -197 253 3 2537 53 0 0 chr4 7949691 7949990 -194378357 + AluY SINE Alu 2 300 -11 526 298 5 2 chr4 7950170 7950913 -194377434 + (CA)n Simple_repeat Simple_repeat 1 745 0 2523 31 7 3 chr4 7950964 7951253 -194377094 - AluY SINE Alu -14 297 8 2517 45 0 0 chr4 7951827 7952117 -194376230 - AluY SINE Alu -10 301 12 2656 51 3 0 chr4 7952163 7952474 -194375873 - AluSp SINE Alu -1 312 1 1489 164 114 0 chr4 7952743 7953042 -194375305 + MLT1A1 LTR MaLR 19 351 -14 2242 84 0 0 chr4 7953183 7953456 -194374891 - AluSq SINE Alu -11 302 30 526 214 170 12 chr4 7953478 7953738 -194374609 - MLT1G1 LTR MaLR -285 270 5 1986 139 10 10 chr4 7954384 7954679 -194373668 + AluJb SINE Alu 1 295 -17 254 289 49 63 chr4 7954921 7955063 -194373284 - MLT1H LTR MaLR -3 546 407 189 256 156 22 chr4 7955279 7955369 -194372978 + L2 LINE L2 1453 1554 -1760 544 178 0 37 chr4 7955675 7955782 -194372565 - MER58C DNA MER1_type 0 215 113 719 178 94 42 chr4 7956375 7956389 -194371958 + MLT1E2 LTR MaLR 160 172 -454 1974 196 8 3 chr4 7956389 7956752 -194371595 - MLT1A1 LTR MaLR 0 365 1 719 178 94 42 chr4 7956752 7956928 -194371419 + MLT1E2 LTR MaLR 172 360 -266 329 298 70 0 chr4 7957023 7957137 -194371210 - L2 LINE L2 -7 3306 3185 209 219 146 37 chr4 7957208 7957290 -194371057 - L2 LINE L2 -60 3212 3122 1749 139 19 38 chr4 7957505 7957821 -194370526 - AluJb SINE Alu -2 310 1 3736 148 109 25 chr4 7957847 7958744 -194369603 + pTR5 LTR ERV1 743 2025 -413 276 250 31 0 chr4 7958744 7958840 -194369507 + LTR30 LTR ERV1 544 642 -80 1398 90 57 5 chr4 7958843 7959055 -194369292 + pTR5 LTR ERV1 172 394 -2044 214 289 0 0 chr4 7959213 7959265 -194369082 + (CG)n Simple_repeat Simple_repeat 2 53 0 24 0 0 0 chr4 7959579 7959603 -194368744 + GC_rich Low_complexity Low_complexity 1 24 0 869 168 0 0 chr4 7961754 7961885 -194366462 + FLAM_C SINE Alu 1 131 -2 199 278 19 0 chr4 7961902 7961956 -194366391 + MIR SINE MIR 203 257 -5 235 251 148 64 chr4 7961982 7962312 -194366035 - L2 LINE L2 -148 3165 2808 387 218 0 30 chr4 7962512 7962613 -194365734 + MER94 DNA DNA 16 113 -21 251 191 103 0 chr4 7963151 7963219 -194365128 - MIR SINE MIR -66 196 122 2895 22 0 0 chr4 7963348 7963666 -194364681 - AluYb8 SINE Alu 0 318 1 194 321 90 80 chr4 7964010 7964321 -194364026 - L2 LINE L2 0 3272 2959 2439 92 0 0 chr4 7964325 7964630 -194363717 + AluY SINE Alu 1 305 -6 249 351 192 0 chr4 7964884 7965035 -194363312 + MIR3 SINE MIR 16 195 -13 238 308 68 0 chr4 7965570 7965687 -194362660 - HAL1 LINE L1 -892 1615 1491 355 276 0 29 chr4 7965788 7965893 -194362454 + L2 LINE L2 2867 2968 -345 283 283 79 28 chr4 7965919 7966096 -194362251 - L2 LINE L2 -1508 1806 1621 232 315 47 63 chr4 7967326 7967453 -194360894 + MIR SINE MIR 66 190 -72 2320 89 23 3 chr4 7967521 7967824 -194360523 + AluSx SINE Alu 1 309 -3 304 303 7 49 chr4 7967866 7968008 -194360339 + L1M4 LINE L1 3841 3976 -2170 1508 115 161 31 chr4 7968951 7969211 -194359136 + AluJo SINE Alu 1 294 -18 2270 85 10 10 chr4 7969225 7969520 -194358827 - AluSx SINE Alu -17 295 1 180 0 0 0 chr4 7970420 7970440 -194357907 + (TG)n Simple_repeat Simple_repeat 1 20 0 1636 180 109 3 chr4 7970487 7970853 -194357494 - MLT2C2 LTR ERVL -55 409 5 372 186 202 23 chr4 7970891 7971020 -194357327 - MIR SINE MIR -78 184 33 328 294 37 28 chr4 7971516 7971625 -194356722 - MIR3 SINE MIR -38 170 61 911 103 0 0 chr4 7971821 7971938 -194356409 - FLAM_C SINE Alu -18 125 9 1715 183 40 71 chr4 7972711 7973133 -194355214 - LTR2 LTR ERV1 0 449 41 440 306 36 10 chr4 7973245 7973441 -194354906 + L2 LINE L2 2976 3176 -96 1149 240 120 8 chr4 7973817 7974217 -194354130 + MLT1C LTR MaLR 22 466 -1 227 325 48 0 chr4 7974727 7974810 -194353537 + MIR3 SINE MIR 92 178 -30 2336 80 11 0 chr4 7976018 7976305 -194352042 - AluSx SINE Alu -11 301 12 1016 167 0 0 chr4 7976635 7976797 -194351550 + FRAM SINE Alu 1 160 -16 2257 109 3 0 chr4 7976800 7977113 -194351234 + AluSx SINE Alu 1 314 0 1259 115 82 0 chr4 7977132 7977315 -194351032 + AluSg/x SINE Alu 81 278 -32 216 0 0 0 chr4 7977316 7977340 -194351007 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 261 163 0 0 chr4 7977343 7977392 -194350955 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 349 216 53 0 chr4 7977393 7977495 -194350852 + L1MC4 LINE L1 1996 6980 -1342 1709 206 73 23 chr4 7978118 7978681 -194349666 + MER39B LTR ERV1 1 649 -4 280 306 0 24 chr4 7980041 7980126 -194348221 + CT-rich Low_complexity Low_complexity 5 87 0 2158 141 0 3 chr4 7980258 7980571 -194347776 - AluJb SINE Alu 0 312 1 255 304 22 11 chr4 7981637 7981729 -194346618 + MIR SINE MIR 47 139 -69 2252 99 0 7 chr4 7982848 7983141 -194345206 - AluSq SINE Alu -17 296 6 2544 70 0 0 chr4 7983158 7983460 -194344887 - AluY SINE Alu -7 304 3 436 221 0 0 chr4 7983979 7984065 -194344282 - AluJ/FRAM SINE Alu -9 303 218 1922 114 0 67 chr4 7984065 7984381 -194343966 - AluY SINE Alu -16 295 1 836 160 8 0 chr4 7984382 7984507 -194343840 - AluJo/FLAM SINE Alu -186 126 1 304 263 61 26 chr4 7984599 7984713 -194343634 + LTR67 LTR ERVL 109 226 -331 1973 161 0 13 chr4 7985258 7985574 -194342773 - AluJo SINE Alu 0 312 1 329 247 43 99 chr4 7985577 7985739 -194342608 - L1ME LINE L1 -294 5827 5675 770 176 15 0 chr4 7985748 7985879 -194342468 - FLAM_C SINE Alu 0 133 1 1773 184 48 39 chr4 7985957 7986392 -194341955 - L1MB2 LINE L1 -2 6169 5731 2365 68 0 0 chr4 7986395 7986733 -194341614 - AluSx SINE Alu 0 312 1 1982 115 10 20 chr4 7987021 7987326 -194341021 - AluSx SINE Alu -10 302 1 502 241 97 14 chr4 7987392 7987586 -194340761 - L1MC4 LINE L1 -132 7910 7697 2282 108 3 0 chr4 7987586 7987882 -194340465 - AluSx SINE Alu -15 297 1 502 241 97 14 chr4 7987882 7987894 -194340453 - L1MC4 LINE L1 -345 7697 7687 304 182 15 0 chr4 7987887 7987953 -194340394 - L1MC4a LINE L1 -584 7224 7158 * 2041 237 15 46 chr4 7987932 7988539 -194339808 - L1MC4 LINE L1 -937 7105 6518 360 59 0 0 chr4 7988895 7988946 -194339401 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 3173 202 36 11 chr4 7989144 7989779 -194338568 - MER82 DNA MER2_type -2 651 1 549 231 30 30 chr4 7990160 7990329 -194338018 + L2 LINE L2 3144 3312 -1 337 280 272 29 chr4 7990358 7990601 -194337746 - L2 LINE L2 -571 2743 2442 859 284 153 6 chr4 7990671 7990991 -194337356 - L2 LINE L2 0 3313 2947 313 307 64 42 chr4 7991037 7991301 -194337046 + HsTC2 DNA Tc2 496 765 -1133 263 281 37 0 chr4 7991524 7991606 -194336741 + (TATG)n Simple_repeat Simple_repeat 3 87 0 380 301 81 43 chr4 7991684 7991870 -194336477 + MLT1I LTR MaLR 217 409 0 257 190 76 38 chr4 7995477 7995556 -194332791 - MIR SINE MIR -21 241 160 261 350 87 0 chr4 7995871 7995974 -194332373 + L2 LINE L2 3144 3255 -17 2009 222 38 12 chr4 7996248 7996609 -194331738 + L1ME LINE L1 5167 5552 -610 1315 193 60 83 chr4 7996609 7997008 -194331339 - MLT1B LTR MaLR 0 390 1 2009 222 38 12 chr4 7997008 7997241 -194331106 + L1ME LINE L1 5552 5778 -384 261 206 82 27 chr4 7997262 7997326 -194331021 - MLT1F1 LTR MaLR -4 563 496 1725 151 20 87 chr4 7997326 7997539 -194330808 - MLT1A1 LTR MaLR 0 365 139 2415 96 0 0 chr4 7997539 7997840 -194330507 - AluSq SINE Alu -12 301 1 1725 151 20 87 chr4 7997840 7997852 -194330495 - MLT1A1 LTR MaLR -226 139 128 1597 172 34 30 chr4 7997852 7998149 -194330198 - AluJo SINE Alu -14 298 1 1725 151 20 87 chr4 7998149 7998243 -194330104 - MLT1A1 LTR MaLR -237 128 73 2818 118 34 0 chr4 7998243 7998657 -194329690 - MSTA LTR MaLR 0 428 1 1725 151 20 87 chr4 7998657 7998726 -194329621 - MLT1A1 LTR MaLR -292 73 1 930 218 102 9 chr4 7998739 7998964 -194329383 - MLT1F1 LTR MaLR -121 446 201 1641 112 0 92 chr4 7998965 7999269 -194329078 - MER4A LTR ERV1 0 664 389 186 43 0 0 chr4 7999269 7999292 -194329055 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2081 116 14 0 chr4 7999298 7999602 -194328745 - AluSx SINE Alu 0 310 3 272 180 20 0 chr4 7999629 7999679 -194328668 - MER4A LTR ERV1 -351 313 263 574 184 0 0 chr4 7999681 7999779 -194328568 - MER4A LTR ERV1 -566 98 1 434 246 22 93 chr4 7999793 7999976 -194328371 - MLT1F1 LTR MaLR -370 172 3 444 245 15 110 chr4 8000098 8000298 -194328049 - MLT1F1-int LTR MaLR -84 1287 1107 518 309 6 12 chr4 8000583 8000745 -194327602 - MLT1F1-int LTR MaLR -510 861 701 478 271 41 58 chr4 8001077 8001270 -194327077 + L1ME3 LINE L1 6009 6162 0 242 356 12 6 chr4 8001313 8001473 -194326874 + (CG)n Simple_repeat Simple_repeat 2 162 0 213 211 0 18 chr4 8001667 8001724 -194326623 + (CCGCG)n Simple_repeat Simple_repeat 4 59 0 23 0 0 0 chr4 8001733 8001756 -194326591 + GC_rich Low_complexity Low_complexity 1 23 0 713 149 18 0 chr4 8002363 8002477 -194325870 - FLAM_A SINE Alu -17 116 1 21 0 0 0 chr4 8002710 8002731 -194325616 + AT_rich Low_complexity Low_complexity 1 21 0 2535 50 0 40 chr4 8003122 8003445 -194324902 - AluY SINE Alu -1 310 1 1808 98 84 42 chr4 8003977 8004264 -194324083 + AluY SINE Alu 1 299 -12 634 227 64 36 chr4 8004320 8004540 -194323807 + L2 LINE L2 2560 2785 -529 2121 123 0 3 chr4 8005206 8005499 -194322848 + AluJo SINE Alu 4 295 -17 311 297 95 34 chr4 8006073 8006221 -194322126 + L2 LINE L2 3155 3311 -2 231 61 0 0 chr4 8006797 8006830 -194321517 + (TC)n Simple_repeat Simple_repeat 1 33 0 2209 116 0 0 chr4 8006985 8007270 -194321077 + AluSq SINE Alu 1 285 -28 342 45 0 0 chr4 8007270 8007314 -194321033 + (CA)n Simple_repeat Simple_repeat 2 45 0 219 88 0 0 chr4 8007436 8007470 -194320877 + (TG)n Simple_repeat Simple_repeat 2 35 0 409 267 0 19 chr4 8007735 8007840 -194320507 + MIR SINE MIR 64 166 -96 2186 182 35 7 chr4 8007935 8008392 -194319955 - L1MB3 LINE L1 0 6183 5714 183 305 21 53 chr4 8009009 8009104 -194319243 - L2 LINE L2 -485 2829 2738 321 241 36 0 chr4 8009491 8009574 -194318773 + MIR3 SINE MIR 81 166 -42 549 203 206 103 chr4 8009725 8010006 -194318341 + MLT1G LTR MaLR 220 524 -66 637 118 16 53 chr4 8010786 8010973 -194317374 + (CA)n Simple_repeat Simple_repeat 1 180 0 325 189 20 40 chr4 8011023 8011379 -194316968 + (CA)n Simple_repeat Simple_repeat 1 348 0 1383 55 0 6 chr4 8011565 8011730 -194316617 - AluY SINE Alu -147 164 1 2258 113 19 10 chr4 8011917 8012226 -194316121 - AluSx SINE Alu 0 312 1 724 149 14 61 chr4 8012835 8012983 -194315364 - FLAM_C SINE Alu -1 142 2 216 234 21 0 chr4 8013676 8013723 -194314624 + L2 LINE L2 3223 3270 -2 2009 128 59 6 chr4 8013793 8014113 -194314234 + MER1B DNA MER1_type 1 337 0 23 0 0 0 chr4 8014565 8014588 -194313759 + AT_rich Low_complexity Low_complexity 1 23 0 1897 170 39 0 chr4 8015833 8016163 -194312184 - MER2 DNA MER2_type 0 344 2 198 333 15 0 chr4 8016230 8016296 -194312051 - MIR SINE MIR -1 261 195 537 273 133 60 chr4 8016442 8016827 -194311520 - L2 LINE L2 -484 2830 2418 2039 128 21 0 chr4 8016830 8017120 -194311227 + AluSx SINE Alu 1 296 -16 1014 125 79 0 chr4 8017120 8017272 -194311075 + AluSg/x SINE Alu 134 297 -15 221 306 116 41 chr4 8017274 8017421 -194310926 - L2 LINE L2 -893 2421 2264 235 274 84 22 chr4 8017922 8018148 -194310199 - L1ME2 LINE L1 -217 5947 5708 2408 64 7 13 chr4 8018160 8018458 -194309889 - AluSc SINE Alu -13 296 1 1588 184 9 35 chr4 8018918 8019233 -194309114 + AluJb SINE Alu 3 309 -3 292 225 28 14 chr4 8019309 8019380 -194308967 - MIR SINE MIR -111 151 80 552 236 205 0 chr4 8020120 8020315 -194308032 - MLT1H1 LTR MaLR -13 542 308 265 266 21 43 chr4 8020500 8020594 -194307753 + HAL1 LINE L1 450 541 -1966 678 242 42 9 chr4 8020681 8020896 -194307451 + HAL1 LINE L1 1016 1237 -1270 274 316 64 22 chr4 8020906 8021035 -194307312 - MIR SINE MIR -67 141 24 193 350 162 5 chr4 8021678 8021875 -194306472 - MIR SINE MIR -7 255 28 612 284 34 59 chr4 8022423 8022662 -194305685 - MIR SINE MIR -14 248 16 35 41 0 0 chr4 8022723 8022772 -194305575 + AT_rich Low_complexity Low_complexity 1 49 0 1770 94 51 0 chr4 8022817 8023052 -194305295 + AluSq SINE Alu 1 247 -66 856 160 96 0 chr4 8023569 8023725 -194304622 + AluJb SINE Alu 121 291 -21 1032 185 0 14 chr4 8023852 8024063 -194304284 - MER96B DNA MER1_type? -206 211 4 316 262 43 64 chr4 8025362 8025519 -194302828 + L1MC4a LINE L1 5703 5857 -1951 2220 114 0 7 chr4 8025519 8025817 -194302530 + AluSq SINE Alu 1 296 -17 316 262 43 64 chr4 8025817 8025846 -194302501 + L1MC4a LINE L1 5857 5885 -1923 2003 133 3 14 chr4 8026869 8027162 -194301185 + AluJo SINE Alu 1 290 -22 2127 123 0 13 chr4 8027162 8027462 -194300885 - AluSx SINE Alu -16 296 1 405 316 70 29 chr4 8027467 8027711 -194300636 - HERV16 LTR ERVL -3456 1540 1287 529 183 0 11 chr4 8028004 8028097 -194300250 - MLT1I LTR MaLR -317 92 1 1918 136 0 4 chr4 8028150 8028422 -194299925 + AluSx SINE Alu 22 292 -20 241 307 40 10 chr4 8028600 8028701 -194299646 + L1MC/D LINE L1 5475 5578 -766 365 308 119 30 chr4 8028712 8029086 -194299261 - LTR16A LTR ERVL -28 436 13 222 341 47 0 chr4 8029188 8029273 -194299074 + L2 LINE L2 3180 3268 -4 416 259 40 26 chr4 8029308 8029559 -194298788 + L2 LINE L2 2580 2944 -328 318 200 0 29 chr4 8029573 8029643 -194298704 - L2 LINE L2 -241 3072 3005 1095 184 16 5 chr4 8030013 8030203 -194298144 + AluJb SINE Alu 43 234 -78 1617 145 0 50 chr4 8030272 8030554 -194297793 + AluJo SINE Alu 31 298 -14 2423 96 0 0 chr4 8030566 8030867 -194297480 + AluSq SINE Alu 1 301 -12 1119 186 29 0 chr4 8030876 8031080 -194297267 + MLT1A1 LTR MaLR 156 365 0 263 206 82 27 chr4 8031080 8031144 -194297203 + MLT1F1 LTR MaLR 496 563 -4 1532 216 26 31 chr4 8031165 8031398 -194296949 - L1ME LINE L1 -384 5778 5546 868 228 60 85 chr4 8031398 8031798 -194296549 + MLT1B LTR MaLR 1 390 0 1532 216 26 31 chr4 8031798 8031985 -194296362 - L1ME LINE L1 -616 5546 5360 201 339 0 0 chr4 8032210 8032272 -194296075 + MIR SINE MIR 92 153 -55 351 157 0 96 chr4 8032419 8032617 -194295730 + (CAGCC)n Simple_repeat Simple_repeat 2 180 0 384 171 0 67 chr4 8032645 8032838 -194295509 + (CAGCC)n Simple_repeat Simple_repeat 1 180 0 443 141 0 70 chr4 8032883 8033068 -194295279 + (CAGCC)n Simple_repeat Simple_repeat 2 173 0 387 162 0 70 chr4 8033099 8033284 -194295063 + (CAGCC)n Simple_repeat Simple_repeat 2 173 0 830 241 138 20 chr4 8033856 8034284 -194294063 - MLT1C LTR MaLR -17 609 11 804 241 97 0 chr4 8035522 8035759 -194292588 - MLT1B LTR MaLR 0 390 131 371 301 114 5 chr4 8036583 8036802 -194291545 - Charlie8 DNA MER1_type -2174 243 1 317 299 146 18 chr4 8036901 8037065 -194291282 + L2 LINE L2 2876 3060 -253 223 320 64 0 chr4 8037135 8037213 -194291134 + L2 LINE L2 3226 3308 -5 2050 133 3 13 chr4 8037214 8037515 -194290832 + AluJb SINE Alu 1 298 -14 1233 67 0 0 chr4 8038152 8038317 -194290030 + L1PA2 LINE L1 5991 6155 0 2000 169 54 12 chr4 8038346 8038753 -194289594 - MSTB LTR MaLR -2 424 1 379 351 20 0 chr4 8040235 8040383 -194287964 - MIR3 SINE MIR -28 180 30 295 266 85 11 chr4 8041601 8041695 -194286652 + L2 LINE L2 3206 3306 -7 216 306 109 34 chr4 8041705 8041852 -194286495 + MIR SINE MIR 89 246 -16 180 296 0 0 chr4 8042038 8042082 -194286265 + MIR3 SINE MIR 162 205 -3 557 238 0 0 chr4 8042177 8042303 -194286044 + FLAM_A SINE Alu 1 126 -7 2336 64 0 30 chr4 8044448 8044744 -194283603 + AluY SINE Alu 21 307 -4 210 333 0 14 chr4 8044875 8044944 -194283403 + MIR SINE MIR 79 146 -62 674 168 0 0 chr4 8045435 8045554 -194282793 - FLAM_A SINE Alu 0 142 24 469 272 159 20 chr4 8046181 8046376 -194281971 - L3 LINE CR1 -123 1454 1233 278 329 74 27 chr4 8048147 8048296 -194280051 + MIR3 SINE MIR 4 159 -49 3252 249 69 79 chr4 8049325 8050306 -194278041 - L1MD3 LINE L1 -1 8041 7051 2180 116 7 7 chr4 8050306 8050599 -194277748 - AluSx SINE Alu -19 293 1 2512 66 3 7 chr4 8050604 8050909 -194277438 - AluY SINE Alu -7 304 1 3252 249 69 79 chr4 8050909 8051376 -194276971 - L1MD3 LINE L1 -995 7047 6614 2423 62 3 3 chr4 8051674 8051963 -194276384 + AluY SINE Alu 23 311 0 2213 120 0 13 chr4 8052551 8052859 -194275488 + AluJo SINE Alu 1 304 -8 860 190 118 10 chr4 8053895 8054090 -194274257 - MER58A DNA MER1_type -8 216 1 21 57 0 0 chr4 8054180 8054215 -194274132 + AT_rich Low_complexity Low_complexity 1 35 0 1790 244 69 41 chr4 8054290 8055417 -194272930 + Charlie1a DNA MER1_type 1 1206 -249 1725 155 34 30 chr4 8055506 8055802 -194272545 - AluJb SINE Alu -2 310 14 271 360 55 24 chr4 8055862 8056026 -194272321 + MIR3 SINE MIR 25 193 -15 22 0 0 0 chr4 8057019 8057041 -194271306 + AT_rich Low_complexity Low_complexity 1 22 0 229 275 66 0 chr4 8058243 8058334 -194270013 + MIR3 SINE MIR 109 205 -3 1380 223 62 13 chr4 8059931 8060316 -194268031 - MER21B LTR ERV1 -168 695 292 324 158 12 98 chr4 8060376 8060458 -194267889 - MER21B LTR ERV1 -788 75 1 183 171 0 0 chr4 8060560 8060595 -194267752 + L2 LINE L2 3276 3310 -3 290 254 45 0 chr4 8060614 8060681 -194267666 - MER58A DNA MER1_type 0 224 155 234 176 39 0 chr4 8060713 8060764 -194267583 - MER58A DNA MER1_type -28 79 27 1690 205 3 3 chr4 8061529 8061827 -194266520 - AluJb SINE Alu -14 298 1 196 299 13 13 chr4 8062280 8062357 -194265990 - L2 LINE L2 -2 3270 3194 2339 102 0 0 chr4 8064042 8064335 -194264012 + AluSx SINE Alu 1 293 -19 659 183 9 0 chr4 8066835 8066950 -194261397 - FLAM_A SINE Alu -17 116 1 362 296 117 15 chr4 8067648 8067844 -194260503 - MIR SINE MIR -12 250 35 408 309 26 7 chr4 8069254 8069406 -194258941 - MIR SINE MIR -74 188 34 243 146 0 0 chr4 8071066 8071107 -194257240 + (CA)n Simple_repeat Simple_repeat 2 42 0 194 341 80 22 chr4 8071114 8071252 -194257095 - MIR SINE MIR -110 152 7 696 269 90 5 chr4 8071608 8071820 -194256527 - MIR SINE MIR -6 256 27 308 308 13 0 chr4 8071852 8071930 -194256417 - L2 LINE L2 0 3313 3235 1229 176 15 0 chr4 8072334 8072539 -194255808 - AluJb SINE Alu -21 291 84 182 376 82 0 chr4 8074995 8075080 -194253267 - L2 LINE L2 -18 3295 3204 191 280 160 0 chr4 8075807 8075882 -194252465 + MIR SINE MIR 97 183 -79 223 273 38 15 chr4 8076018 8076150 -194252197 + (TA)n Simple_repeat Simple_repeat 2 136 0 407 219 12 0 chr4 8076161 8076243 -194252104 - FLAM_A SINE Alu -59 83 1 423 294 128 11 chr4 8076257 8076437 -194251910 - L2 LINE L2 -31 3282 3082 192 328 102 55 chr4 8076813 8077264 -194251083 + L2 LINE L2 1614 2085 -1229 280 283 78 56 chr4 8078831 8079011 -194249336 + MIR3 SINE MIR 18 201 -7 1719 163 24 7 chr4 8079395 8079684 -194248663 - AluJb SINE Alu -18 294 1 223 251 194 52 chr4 8081573 8081776 -194246571 - MIR SINE MIR -35 227 1 1755 132 7 15 chr4 8082376 8082649 -194245698 - AluJo SINE Alu -28 284 14 198 298 125 39 chr4 8082649 8082753 -194245594 + MIR SINE MIR 113 225 -37 940 149 0 0 chr4 8082894 8083042 -194245305 - L1MB3 LINE L1 0 6183 6036 755 151 0 43 chr4 8083084 8083223 -194245124 - FLAM_C SINE Alu -10 133 1 1174 240 50 8 chr4 8083224 8083583 -194244764 - L1MB3 LINE L1 -218 5965 5592 22 0 0 0 chr4 8084441 8084463 -194243884 + AT_rich Low_complexity Low_complexity 1 22 0 351 296 106 8 chr4 8088983 8089115 -194239232 - L2 LINE L2 -3 3269 3125 1362 238 57 59 chr4 8090010 8090539 -194237808 + MER74A LTR ERVL 30 557 -1 243 240 0 0 chr4 8091536 8091586 -194236761 - L2 LINE L2 0 3272 3223 2680 93 8 3 chr4 8093245 8093598 -194234749 - THE1A LTR MaLR 0 355 1 212 289 0 0 chr4 8094001 8094053 -194234294 - MIR SINE MIR -22 240 189 2208 68 10 0 chr4 8094075 8094367 -194233980 - AluSq SINE Alu -18 295 1 1782 318 73 44 chr4 8094857 8095689 -194232658 + ERVL LTR ERVL 1529 2412 -3352 2263 115 144 3 chr4 8095689 8096064 -194232283 + MSTA LTR MaLR 1 428 0 1782 318 73 44 chr4 8096064 8096500 -194231847 + ERVL LTR ERVL 2412 2834 -2930 232 270 58 44 chr4 8097488 8097625 -194230722 - HAL1b LINE L1 -895 453 315 2412 47 3 10 chr4 8097864 8098163 -194230184 - AluY SINE Alu -14 297 1 960 286 92 65 chr4 8099184 8099891 -194228456 + L2 LINE L2 1140 1865 -1449 433 340 20 40 chr4 8100032 8100282 -194228065 + L2 LINE L2 2245 2489 -825 1230 264 89 12 chr4 8101521 8102014 -194226333 - MER90 LTR ERV1 0 614 84 184 311 27 0 chr4 8103468 8103542 -194224805 + L2 LINE L2 3200 3275 -38 408 88 0 0 chr4 8103630 8103687 -194224660 + (TG)n Simple_repeat Simple_repeat 1 57 0 216 0 0 0 chr4 8104081 8104105 -194224242 + (TC)n Simple_repeat Simple_repeat 2 25 0 353 240 156 7 chr4 8106090 8106244 -194222103 + MIR3 SINE MIR 17 193 -15 218 204 0 0 chr4 8107874 8107918 -194220429 + MIR SINE MIR 104 147 -61 346 339 119 0 chr4 8108295 8108472 -194219875 + MIR SINE MIR 51 248 -14 182 323 0 16 chr4 8108706 8108768 -194219579 + MIR SINE MIR 93 153 -109 254 254 74 96 chr4 8108983 8109184 -194219163 + MIR SINE MIR 19 227 -35 182 253 39 54 chr4 8109215 8109323 -194219024 + MIR SINE MIR 50 144 -64 647 251 165 56 chr4 8109358 8109789 -194218558 + MLT1G3 LTR MaLR 92 539 -3 195 235 226 17 chr4 8110574 8110689 -194217658 + L2 LINE L2 3014 3152 -120 209 326 12 0 chr4 8111005 8111072 -194217275 - MIR SINE MIR -63 145 74 211 307 13 0 chr4 8111533 8111608 -194216739 + MIR SINE MIR 10 85 -177 205 383 145 9 chr4 8111620 8111834 -194216513 - L2 LINE L2 -812 2502 2260 277 360 9 9 chr4 8111846 8111957 -194216390 + L2 LINE L2 2966 3076 -196 414 230 20 1 chr4 8112689 8112801 -194215546 + MIR SINE MIR 33 145 -63 248 298 20 57 chr4 8114516 8114638 -194213709 + MIR SINE MIR 35 150 -70 210 345 109 24 chr4 8114673 8114838 -194213509 - L2 LINE L2 -64 3208 3030 4449 188 21 40 chr4 8115178 8116395 -194211952 - L1M2 LINE L1 -744 5402 4315 2817 191 69 1 chr4 8116601 8117257 -194211090 - L1MB7 LINE L1 -41 6143 5444 261 278 41 10 chr4 8117418 8117515 -194210832 + MLT1J1 LTR MaLR 44 143 -303 182 359 98 0 chr4 8119564 8119656 -194208691 + L2 LINE L2 3138 3238 -34 231 180 20 40 chr4 8119700 8119750 -194208597 + MIR SINE MIR 104 152 -56 333 197 82 0 chr4 8120344 8120434 -194207913 - MIR SINE MIR -64 144 64 1501 127 5 9 chr4 8120885 8121128 -194207219 - AluSg SINE Alu 0 303 62 248 318 37 17 chr4 8121426 8121557 -194206790 - MIR3 SINE MIR -74 134 15 218 350 21 43 chr4 8121732 8121872 -194206475 + L2 LINE L2 2725 2861 -453 239 293 0 0 chr4 8122397 8122455 -194205892 + (CACCAT)n Simple_repeat Simple_repeat 5 62 0 * 954 174 2 5 chr4 8122426 8123375 -194204972 + (CCA)n Simple_repeat Simple_repeat 1 946 0 252 86 0 0 chr4 8123847 8123882 -194204465 + (CTCA)n Simple_repeat Simple_repeat 1 35 0 213 213 0 0 chr4 8124498 8124545 -194203802 + CT-rich Low_complexity Low_complexity 3 49 0 884 188 152 25 chr4 8124725 8125001 -194203346 + MLT1C LTR MaLR 17 327 -140 188 182 0 0 chr4 8125082 8125115 -194203232 - MIR SINE MIR -113 149 117 238 284 82 8 chr4 8125417 8125551 -194202796 - L1ME4a LINE L1 0 6121 5978 3165 234 71 40 chr4 8125583 8126003 -194202344 - L1MD1 LINE L1 -5 6237 5831 2020 132 0 3 chr4 8126003 8126299 -194202048 - AluSx SINE Alu -17 295 1 3165 234 71 40 chr4 8126299 8127257 -194201090 - L1MD1 LINE L1 -411 5831 4813 228 122 0 0 chr4 8127410 8127451 -194200896 + (TG)n Simple_repeat Simple_repeat 2 42 0 393 285 54 8 chr4 8127985 8128155 -194200192 + MIR3 SINE MIR 37 210 -46 343 244 62 31 chr4 8128547 8128740 -194199607 + L1ME4a LINE L1 5922 6120 -1 239 156 39 0 chr4 8129632 8129689 -194198658 - MIR SINE MIR -62 146 99 229 327 52 59 chr4 8129821 8129974 -194198373 + MIR3 SINE MIR 12 163 -45 281 293 213 32 chr4 8129990 8130338 -194198009 - L2 LINE L2 -3 3269 2859 845 196 17 7 chr4 8130747 8131170 -194197177 + (TGGA)n Simple_repeat Simple_repeat 1 427 0 365 306 106 6 chr4 8131539 8131699 -194196648 - L2 LINE L2 -103 3169 2994 688 206 265 5 chr4 8132878 8133097 -194195250 + MLT1F1 LTR MaLR 7 282 -285 243 241 17 0 chr4 8133343 8133401 -194194946 - MIR SINE MIR -63 145 87 950 177 89 7 chr4 8133694 8134062 -194194285 + MER31A LTR ERV1 27 478 -7 523 273 40 48 chr4 8134136 8134385 -194193962 + MER46C DNA MER2_type 90 336 -2 453 149 0 0 chr4 8135693 8135767 -194192580 - MIR SINE MIR -118 144 71 240 217 83 75 chr4 8137140 8137260 -194191087 - MIR SINE MIR -117 145 25 272 278 52 61 chr4 8139712 8139827 -194188520 - L2 LINE L2 0 3313 3200 354 344 33 0 chr4 8140192 8140314 -194188033 + L2 LINE L2 3182 3307 -6 217 339 0 0 chr4 8140433 8140495 -194187852 + MIR SINE MIR 92 153 -55 369 174 0 65 chr4 8140630 8140910 -194187437 + (CAGCC)n Simple_repeat Simple_repeat 1 261 0 433 150 0 70 chr4 8141009 8141196 -194187151 + (CAGCC)n Simple_repeat Simple_repeat 2 175 0 362 168 0 70 chr4 8141268 8141453 -194186894 + (CAGCC)n Simple_repeat Simple_repeat 2 173 0 835 255 115 23 chr4 8142052 8142463 -194185884 - MLT1C LTR MaLR -17 488 40 197 181 28 56 chr4 8143832 8143904 -194184443 + L2 LINE L2 3027 3096 -176 434 275 186 36 chr4 8144569 8144816 -194183531 + L2 LINE L2 2989 3272 0 316 232 24 0 chr4 8144981 8145063 -194183284 - MIR SINE MIR -118 144 61 202 309 82 0 chr4 8145877 8145987 -194182360 + L2 LINE L2 2735 2853 -461 413 160 8 50 chr4 8146181 8146300 -194182047 + CT-rich Low_complexity Low_complexity 2 115 0 339 200 88 0 chr4 8146504 8146584 -194181763 - MIR SINE MIR -110 152 66 195 238 79 16 chr4 8146844 8146907 -194181440 + L3 LINE CR1 968 1034 -543 192 300 0 33 chr4 8147622 8147682 -194180665 + L3 LINE CR1 1410 1467 -110 264 260 55 0 chr4 8150927 8151000 -194177347 - MIR3 SINE MIR -17 191 115 1221 96 0 0 chr4 8151466 8151677 -194176670 + (TCCA)n Simple_repeat Simple_repeat 1 211 0 1386 56 0 0 chr4 8151697 8151877 -194176470 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 1080 124 0 0 chr4 8152097 8152275 -194176072 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 307 371 111 22 chr4 8152354 8152715 -194175632 - L2 LINE L2 -3 3269 2877 201 278 19 0 chr4 8152724 8152778 -194175569 + L2 LINE L2 3217 3271 -1 299 226 66 47 chr4 8153070 8153176 -194175171 - MIR3 SINE MIR 0 208 101 212 341 171 43 chr4 8154642 8154941 -194173406 + L2 LINE L2 2913 3249 -23 332 262 58 9 chr4 8155010 8155120 -194173227 - MIR3 SINE MIR -53 155 58 228 317 37 0 chr4 8156170 8156252 -194172095 - L2 LINE L2 0 3272 3188 776 145 36 16 chr4 8156739 8157047 -194171300 + (TCCA)n Simple_repeat Simple_repeat 1 314 0 535 156 50 0 chr4 8157067 8157227 -194171120 + (TCCA)n Simple_repeat Simple_repeat 3 170 0 715 164 29 0 chr4 8157252 8157423 -194170924 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 606 158 40 0 chr4 8157448 8157680 -194170667 + (TCCA)n Simple_repeat Simple_repeat 1 241 0 348 314 42 0 chr4 8158837 8158955 -194169392 + MIR SINE MIR 50 172 -90 234 261 0 0 chr4 8159164 8159210 -194169137 + MIR SINE MIR 111 156 -106 938 214 45 15 chr4 8159504 8159770 -194168577 + L1MB7 LINE L1 5902 6175 -9 341 242 87 27 chr4 8161453 8161602 -194166745 + L1ME4a LINE L1 5952 6109 -12 2233 104 7 0 chr4 8161792 8162091 -194166256 - AluSx SINE Alu -11 301 1 359 297 27 18 chr4 8162708 8162819 -194165528 + L2 LINE L2 3201 3312 -1 270 279 0 0 chr4 8162819 8162880 -194165467 - MIR SINE MIR -92 170 110 243 358 8 8 chr4 8162965 8163085 -194165262 - L2 LINE L2 -220 3052 2933 230 359 127 0 chr4 8163124 8163266 -194165081 - MIR SINE MIR -26 236 77 221 282 18 3 chr4 8163711 8163779 -194164568 + MIR SINE MIR 21 89 -119 404 288 103 32 chr4 8163871 8164152 -194164195 + MLT1H LTR MaLR 147 447 -102 378 209 180 57 chr4 8164158 8164369 -194163978 + MLT1H LTR MaLR 299 535 -14 201 224 41 0 chr4 8165611 8165660 -194162687 - MIR SINE MIR -134 128 78 251 193 96 36 chr4 8165675 8165758 -194162589 - MIR SINE MIR -1 261 174 1788 212 37 33 chr4 8165818 8166309 -194162038 - MLT1D LTR MaLR -1 504 12 530 241 60 79 chr4 8166320 8166585 -194161762 - MLT1D-int LTR MaLR 0 1371 1112 655 251 184 43 chr4 8167726 8168145 -194160202 - MLT1D LTR MaLR -25 480 3 693 298 48 4 chr4 8168483 8168711 -194159636 - MIR SINE MIR -19 243 6 453 244 17 9 chr4 8168961 8169076 -194159271 - MIR SINE MIR -141 121 6 287 304 35 17 chr4 8169981 8170096 -194158251 + MIR SINE MIR 22 138 -70 195 214 0 0 chr4 8170393 8170463 -194157884 + GA-rich Low_complexity Low_complexity 2 71 0 504 196 0 30 chr4 8170517 8170685 -194157662 + GA-rich Low_complexity Low_complexity 1 163 0 227 243 0 27 chr4 8170739 8170850 -194157497 + GA-rich Low_complexity Low_complexity 1 108 0 667 175 267 0 chr4 8170926 8171143 -194157204 + MER58 DNA MER1_type 2146 2420 0 227 255 0 0 chr4 8171163 8171214 -194157133 + G-rich Low_complexity Low_complexity 4 54 0 450 219 21 20 chr4 8171540 8171671 -194156676 + MIR SINE MIR 33 165 -43 191 323 16 0 chr4 8171863 8171925 -194156422 - L2 LINE L2 -2 3311 3249 2425 59 20 3 chr4 8172878 8173184 -194155163 - AluY SINE Alu 0 311 1 553 345 93 13 chr4 8173935 8174323 -194154024 - L1ME4a LINE L1 -225 5896 5478 474 320 10 10 chr4 8174590 8174784 -194153563 - MLT1J LTR MaLR -295 216 23 6141 180 50 43 chr4 8175082 8175240 -194153107 - L1M4c LINE L1 -4787 1597 1442 2173 117 3 0 chr4 8175240 8175540 -194152807 + AluSx SINE Alu 2 302 -10 6141 180 50 43 chr4 8175540 8176967 -194151380 - L1M4c LINE L1 -4942 1442 1 300 422 12 12 chr4 8177144 8177305 -194151042 + L1ME4a LINE L1 5324 5484 -637 305 307 93 29 chr4 8177375 8177655 -194150692 + L1ME4a LINE L1 5594 5891 -230 264 349 28 94 chr4 8179000 8179435 -194148912 + L2 LINE L2 2907 3312 -1 331 330 19 0 chr4 8179543 8179646 -194148701 + MIR SINE MIR 47 151 -111 310 313 0 0 chr4 8179761 8179841 -194148506 - L2 LINE L2 -23 3290 3211 1261 246 62 42 chr4 8181138 8181635 -194146712 + MER90 LTR ERV1 108 614 0 360 274 75 52 chr4 8181878 8182130 -194146217 - L2 LINE L2 -173 3099 2842 464 371 125 0 chr4 8182307 8182587 -194145760 + L3 LINE CR1 1230 1544 -33 321 89 0 0 chr4 8183728 8183773 -194144574 + (TCC)n Simple_repeat Simple_repeat 3 47 0 1071 102 17 0 chr4 8184131 8184308 -194144039 + (CTCA)n Simple_repeat Simple_repeat 1 180 0 981 144 0 0 chr4 8184308 8184338 -194144009 + (CTCA)n Simple_repeat Simple_repeat 1 204 0 981 144 0 0 chr4 8184338 8184512 -194143835 + (CTCA)n Simple_repeat Simple_repeat 4 177 0 395 277 31 15 chr4 8184651 8184781 -194143566 + MER63A DNA MER1_type 53 184 -26 182 61 0 30 chr4 8185233 8185266 -194143081 + (TGGGGG)n Simple_repeat Simple_repeat 4 35 0 391 288 22 66 chr4 8186342 8186543 -194141804 - MIR3 SINE MIR -56 206 15 272 345 37 15 chr4 8186734 8186903 -194141444 - MIR SINE MIR -68 140 3 368 286 119 24 chr4 8187361 8187571 -194140776 - MIR SINE MIR -2 260 31 204 40 0 0 chr4 8188180 8188205 -194140142 + (T)n Simple_repeat Simple_repeat 1 25 0 1038 152 1 6 chr4 8189134 8189936 -194138411 + (CTCA)n Simple_repeat Simple_repeat 1 797 0 298 183 33 0 chr4 8189936 8189996 -194138351 + (TTCA)n Simple_repeat Simple_repeat 3 64 0 574 214 6 16 chr4 8189998 8190180 -194138167 + (CTCA)n Simple_repeat Simple_repeat 1 180 0 349 275 28 0 chr4 8192003 8192112 -194136235 + MER45C DNA AcHobo 83 194 -759 225 0 0 0 chr4 8192254 8192279 -194136068 + (TG)n Simple_repeat Simple_repeat 2 26 0 647 255 165 48 chr4 8193815 8193939 -194134408 + MER45C DNA AcHobo 1 109 -844 2228 89 3 0 chr4 8193939 8194231 -194134116 + AluSp SINE Alu 1 293 -20 647 255 165 48 chr4 8194231 8194482 -194133865 + MER45C DNA AcHobo 109 420 -533 347 237 0 3 chr4 8194488 8194646 -194133701 + MER45C DNA AcHobo 756 953 0 1776 191 70 5 chr4 8195564 8195963 -194132384 + LTR32 LTR ERVL 47 471 0 492 32 0 0 chr4 8196704 8196766 -194131581 + (GGCTG)n Simple_repeat Simple_repeat 4 65 0 242 225 144 9 chr4 8196766 8196877 -194131470 + MIR SINE MIR 19 144 -64 187 303 97 28 chr4 8196976 8197121 -194131226 + MIR SINE MIR 87 241 -21 248 365 21 0 chr4 8197207 8197303 -194131044 - MIR SINE MIR -80 182 85 224 267 134 62 chr4 8198089 8198378 -194129969 + L2 LINE L2 2771 3084 -188 361 218 129 0 chr4 8198897 8198998 -194129349 + L2 LINE L2 3184 3297 -16 240 35 0 0 chr4 8199264 8199293 -194129054 + (TCC)n Simple_repeat Simple_repeat 2 30 0 270 221 63 32 chr4 8200324 8200419 -194127928 + L2 LINE L2 2917 3014 -258 805 194 70 0 chr4 8200637 8200823 -194127524 - MLT1B LTR MaLR 0 390 192 773 153 0 8 chr4 8200827 8200951 -194127396 - FRAM SINE Alu -5 171 49 859 148 77 0 chr4 8200984 8201153 -194127194 - MLT1B LTR MaLR -201 189 8 476 274 0 0 chr4 8201466 8201590 -194126757 - MER58B DNA MER1_type 0 341 218 299 278 216 0 chr4 8201740 8201837 -194126510 + L2 LINE L2 3182 3299 -14 207 88 0 0 chr4 8201966 8202000 -194126347 + (CA)n Simple_repeat Simple_repeat 1 34 0 376 250 58 17 chr4 8202002 8202122 -194126225 - MIR SINE MIR -58 204 80 261 279 70 0 chr4 8203867 8203953 -194124394 + L2 LINE L2 2993 3084 -188 250 217 12 24 chr4 8204500 8204583 -194123764 + MLT1H LTR MaLR 111 192 -357 1113 100 13 20 chr4 8205426 8205784 -194122563 + (TCCA)n Simple_repeat Simple_repeat 1 537 0 234 231 0 31 chr4 8205820 8205885 -194122462 - L2 LINE L2 -53 3219 3157 1887 132 66 44 chr4 8205945 8206310 -194122037 + THE1C LTR MaLR 1 373 -2 303 308 154 0 chr4 8206501 8206696 -194121651 + LTR33 LTR ERVL 50 274 -247 481 268 39 22 chr4 8206753 8206932 -194121415 + MLT1D LTR MaLR 16 197 -308 474 228 0 0 chr4 8206938 8207176 -194121171 + (CA)n Simple_repeat Simple_repeat 1 238 0 347 247 6 0 chr4 8207195 8207353 -194120994 + (CA)n Simple_repeat Simple_repeat 1 159 0 198 241 0 0 chr4 8207406 8207493 -194120854 + (CA)n Simple_repeat Simple_repeat 1 87 0 360 244 0 0 chr4 8207554 8207734 -194120613 + (CA)n Simple_repeat Simple_repeat 1 180 0 432 233 0 0 chr4 8207769 8207941 -194120406 + (CA)n Simple_repeat Simple_repeat 2 173 0 234 248 0 0 chr4 8207959 8208068 -194120279 + (CA)n Simple_repeat Simple_repeat 1 109 0 596 271 81 9 chr4 8208114 8208335 -194120012 + MLT1D LTR MaLR 261 497 -8 318 98 0 0 chr4 8209734 8209785 -194118562 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 251 366 58 31 chr4 8209882 8210106 -194118241 - L2 LINE L2 0 3313 3084 1096 262 77 25 chr4 8210262 8210701 -194117646 + MLT1C LTR MaLR 6 467 0 312 127 0 0 chr4 8211064 8211119 -194117228 + (TTCA)n Simple_repeat Simple_repeat 2 56 0 195 209 47 0 chr4 8211259 8211302 -194117045 - MIR SINE MIR -204 58 14 335 136 0 45 chr4 8212077 8212143 -194116204 - L1MD3 LINE L1 -13 7982 7920 263 263 222 0 chr4 8212149 8212248 -194116099 - MIR SINE MIR -128 134 14 2393 260 92 4 chr4 8212298 8213076 -194115271 - L1MC3 LINE L1 -70 7715 6869 2084 112 10 0 chr4 8213093 8213389 -194114958 - AluSx SINE Alu -13 299 1 365 263 29 36 chr4 8214010 8214147 -194114200 - L2 LINE L2 -216 3056 2921 275 286 95 24 chr4 8214490 8214616 -194113731 + L2 LINE L2 2959 3093 -179 299 316 73 7 chr4 8215328 8215464 -194112883 - MIR SINE MIR -37 225 81 210 118 0 0 chr4 8216415 8216449 -194111898 + (A)n Simple_repeat Simple_repeat 1 34 0 443 374 75 19 chr4 8217387 8217919 -194110428 - L2 LINE L2 -661 2653 2092 32 0 0 0 chr4 8218195 8218227 -194110120 + AT_rich Low_complexity Low_complexity 1 32 0 500 172 35 132 chr4 8218227 8218401 -194109946 - L1MA7 LINE L1 -2 6289 6133 615 231 18 1 chr4 8218585 8218770 -194109577 - L1MB4 LINE L1 0 6180 5992 252 253 120 0 chr4 8218813 8218888 -194109459 + L2 LINE L2 3205 3288 -25 2254 72 10 0 chr4 8218948 8219241 -194109106 - AluY SINE Alu -15 296 1 255 31 0 0 chr4 8219268 8219300 -194109047 + (TTCTG)n Simple_repeat Simple_repeat 5 36 0 1925 150 3 0 chr4 8220197 8220503 -194107844 + AluJb SINE Alu 1 307 -5 344 313 62 58 chr4 8220604 8220812 -194107535 - L2 LINE L2 -1 3312 3104 328 294 32 97 chr4 8220812 8221091 -194107256 + L1ME4a LINE L1 5838 6098 -23 1731 141 0 28 chr4 8221297 8221625 -194106722 - AluJo SINE Alu 0 320 1 389 259 6 0 chr4 8221646 8221804 -194106543 + CT-rich Low_complexity Low_complexity 1 159 0 440 345 21 23 chr4 8221988 8222218 -194106129 - MIR SINE MIR -18 244 17 361 271 120 30 chr4 8223371 8223504 -194104843 - MIR SINE MIR -10 252 108 221 295 63 11 chr4 8223630 8223725 -194104622 - L2 LINE L2 -54 3259 3160 200 275 14 0 chr4 8224011 8224080 -194104267 - L2 LINE L2 -1230 2084 2015 253 146 0 0 chr4 8225036 8225077 -194103270 - L3 LINE CR1 -112 1465 1425 873 161 3 0 chr4 8225886 8226179 -194102168 + (CA)n Simple_repeat Simple_repeat 1 294 0 409 292 34 34 chr4 8226894 8227072 -194101275 + LTR16A1 LTR ERVL 62 239 -218 495 89 0 33 chr4 8227396 8227486 -194100861 + (GGA)n Simple_repeat Simple_repeat 3 89 0 446 329 162 22 chr4 8228513 8228612 -194099735 - L2 LINE L2 -26 3287 3203 255 31 0 0 chr4 8228612 8228644 -194099703 + (TG)n Simple_repeat Simple_repeat 2 33 0 446 329 162 22 chr4 8228644 8229515 -194098832 - L2 LINE L2 -110 3203 2174 240 337 30 10 chr4 8229647 8229748 -194098599 - MIR SINE MIR -113 149 47 330 345 61 39 chr4 8229770 8230080 -194098267 + L2 LINE L2 2955 3271 -1 183 80 0 0 chr4 8230102 8230127 -194098220 + (TGGG)n Simple_repeat Simple_repeat 3 27 0 300 235 18 24 chr4 8230181 8230347 -194098000 + (TGGA)n Simple_repeat Simple_repeat 4 168 0 762 146 35 0 chr4 8231011 8231182 -194097165 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 494 160 34 117 chr4 8231411 8231617 -194096730 - MER53 DNA DNA 0 189 1 209 260 40 0 chr4 8232128 8232178 -194096169 - MER91A DNA MER1_type -126 70 19 282 305 48 0 chr4 8232195 8232300 -194096047 + L2 LINE L2 3199 3308 -5 602 203 25 0 chr4 8232304 8232467 -194095880 + (TGGA)n Simple_repeat Simple_repeat 3 169 0 581 165 28 23 chr4 8232519 8232695 -194095652 + (TGGA)n Simple_repeat Simple_repeat 4 180 0 851 133 17 17 chr4 8232740 8232920 -194095427 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 629 134 28 34 chr4 8232958 8233137 -194095210 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 776 163 17 6 chr4 8233177 8233355 -194094992 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 297 132 26 26 chr4 8233367 8233443 -194094904 + (TGGA)n Simple_repeat Simple_repeat 2 77 0 591 189 26 13 chr4 8233486 8233715 -194094632 + (TGGA)n Simple_repeat Simple_repeat 1 232 0 582 239 161 63 chr4 8235583 8235838 -194092509 - MER58B DNA MER1_type 0 341 62 218 267 105 87 chr4 8237843 8238015 -194090332 - L2 LINE L2 -36 3236 3062 195 228 18 18 chr4 8238297 8238354 -194089993 - MIR SINE MIR -136 126 70 231 302 155 9 chr4 8238567 8238683 -194089664 + L2 LINE L2 3124 3256 -16 189 317 173 36 chr4 8238967 8239216 -194089131 - L2 LINE L2 -12 3301 3019 331 248 109 0 chr4 8239293 8239394 -194088953 + LTR16C LTR ERVL 202 313 -178 288 311 0 0 chr4 8239459 8239533 -194088814 + LTR16C LTR ERVL 418 491 0 249 253 154 62 chr4 8239609 8239771 -194088576 + MIR3 SINE MIR 11 187 -21 246 318 94 40 chr4 8239794 8239995 -194088352 + MIR SINE MIR 36 247 -15 229 323 141 0 chr4 8240716 8240815 -194087532 + MLT1J LTR MaLR 40 152 -359 253 271 32 101 chr4 8241814 8242002 -194086345 + L1MEd LINE L1 11 185 -5934 991 301 100 30 chr4 8242040 8242511 -194085836 + MLT1J LTR MaLR 2 505 -6 1935 131 67 62 chr4 8242663 8242883 -194085464 - THE1C LTR MaLR 0 375 151 2136 56 63 0 chr4 8242883 8243167 -194085180 + AluY SINE Alu 1 302 -9 1935 131 67 62 chr4 8243167 8243319 -194085028 - THE1C LTR MaLR -224 151 1 308 144 51 42 chr4 8243388 8243506 -194084841 + (CA)n Simple_repeat Simple_repeat 2 120 0 493 287 105 29 chr4 8243671 8244089 -194084258 + L1MEd LINE L1 621 1070 -5049 9400 57 8 108 chr4 8244273 8245795 -194082552 + SVA Other Other 1 1369 -17 197 33 33 0 chr4 8245799 8245829 -194082518 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1025 170 12 0 chr4 8245841 8246012 -194082335 - AluSg/x SINE Alu -6 306 134 1267 127 24 19 chr4 8246368 8246573 -194081774 + AluSq SINE Alu 68 273 -40 283 298 35 15 chr4 8246574 8246772 -194081575 + L1MEd LINE L1 2227 2428 -3701 381 93 0 0 chr4 8246783 8246837 -194081510 + (TG)n Simple_repeat Simple_repeat 2 55 0 646 142 35 0 chr4 8247156 8247269 -194081078 + MLT1D LTR MaLR 372 488 -17 2007 152 7 0 chr4 8247360 8247670 -194080677 + AluSx SINE Alu 1 312 0 286 194 41 71 chr4 8249155 8249215 -194079132 + MER92B LTR ERV1 157 214 -422 2273 105 0 0 chr4 8249215 8249521 -194078826 + AluSg SINE Alu 1 306 -4 286 194 41 71 chr4 8249521 8249558 -194078789 + MER92B LTR ERV1 214 251 -385 515 255 182 0 chr4 8249573 8249765 -194078582 + MER92B LTR ERV1 358 584 -52 272 211 92 0 chr4 8250346 8250422 -194077925 + MER92B LTR ERV1 546 628 -8 268 303 92 17 chr4 8251566 8251685 -194076662 + L2 LINE L2 3145 3272 0 2540 218 89 48 chr4 8251817 8252525 -194075822 + MER21B LTR ERV1 12 748 -115 263 388 18 24 chr4 8252600 8252770 -194075577 - MIR SINE MIR -82 180 12 287 313 62 23 chr4 8253355 8253483 -194074864 + L2 LINE L2 3139 3271 -1 665 279 32 23 chr4 8254077 8254296 -194074051 + MLT1G1 LTR MaLR 16 236 -359 634 147 0 0 chr4 8254296 8254391 -194073956 - AluJb SINE Alu -11 301 207 260 276 94 47 chr4 8254415 8254542 -194073805 + MLT1G1 LTR MaLR 423 555 0 246 32 0 0 chr4 8254633 8254664 -194073683 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 756 301 77 18 chr4 8254707 8255060 -194073287 - MLT1I LTR MaLR -13 396 13 22 0 0 0 chr4 8255215 8255237 -194073110 + AT_rich Low_complexity Low_complexity 1 22 0 290 266 8 32 chr4 8256218 8256342 -194072005 + GA-rich Low_complexity Low_complexity 1 121 0 719 196 0 0 chr4 8256583 8256716 -194071631 - MLT1D LTR MaLR -5 500 368 253 255 112 20 chr4 8256783 8256881 -194071466 + MIR SINE MIR 44 150 -58 646 246 78 6 chr4 8257601 8257780 -194070567 + MIR SINE MIR 36 227 -35 2272 103 0 0 chr4 8257781 8258091 -194070256 + AluSg SINE Alu 1 310 0 207 366 47 11 chr4 8258380 8258571 -194069776 + L2 LINE L2 2847 3044 -228 620 301 42 5 chr4 8260316 8260532 -194067815 - L3 LINE CR1 -60 1517 1294 3110 97 16 9 chr4 8260722 8261164 -194067183 + L1PA11 LINE L1 5727 6171 -3 325 308 62 82 chr4 8261188 8261396 -194066951 + HAL1 LINE L1 1086 1289 -1218 397 283 154 38 chr4 8261574 8261814 -194066533 + HAL1b LINE L1 452 719 -629 351 336 0 0 chr4 8262936 8263040 -194065307 + MIR3 SINE MIR 84 187 -21 192 303 84 67 chr4 8263298 8263417 -194064930 - L2 LINE L2 -4 3309 3189 257 245 134 28 chr4 8263431 8263601 -194064746 - MIR SINE MIR -57 205 16 2280 137 33 22 chr4 8263662 8264021 -194064326 - THE1B LTR MaLR 0 364 2 219 333 29 36 chr4 8264028 8264166 -194064181 + MIR3 SINE MIR 45 181 -27 217 191 0 21 chr4 8264455 8264502 -194063845 - L2 LINE L2 -5 3308 3263 215 228 0 0 chr4 8264784 8264841 -194063506 + T-rich Low_complexity Low_complexity 1 57 0 574 307 62 8 chr4 8265152 8265393 -194062954 + MIR SINE MIR 1 254 -8 366 291 118 0 chr4 8265411 8265538 -194062809 + L1ME4a LINE L1 5773 5914 -207 448 272 96 92 chr4 8266083 8266322 -194062025 - L1ME LINE L1 -592 5529 5290 448 266 55 0 chr4 8266391 8266519 -194061828 + MIR SINE MIR 74 208 -54 1710 155 13 26 chr4 8266972 8267276 -194061071 - AluSx SINE Alu -8 304 5 209 355 66 13 chr4 8267474 8267626 -194060721 + L2 LINE L2 2907 3066 -206 383 289 90 0 chr4 8267930 8268094 -194060253 + MIR SINE MIR 16 203 -5 25 51 0 0 chr4 8268199 8268238 -194060109 + AT_rich Low_complexity Low_complexity 1 39 0 411 294 18 65 chr4 8268653 8268823 -194059524 - MIR3 SINE MIR -14 194 33 1348 184 139 65 chr4 8269107 8269509 -194058838 - MSTB1 LTR MaLR 0 432 1 181 278 56 14 chr4 8270351 8270423 -194057924 + L2 LINE L2 2671 2745 -569 399 338 61 13 chr4 8270485 8270713 -194057634 + MER102b DNA MER1_type 102 340 -1 217 288 0 0 chr4 8270899 8270958 -194057389 + L2 LINE L2 2985 3043 -229 303 269 120 0 chr4 8271774 8271882 -194056465 + Charlie5 DNA MER1_type 7 127 -2485 * 1489 184 28 46 chr4 8271879 8272270 -194056077 + Charlie5 DNA MER1_type 2234 2617 0 452 174 0 10 chr4 8272824 8272922 -194055425 + CT-rich Low_complexity Low_complexity 1 97 0 262 315 196 4 chr4 8273347 8273607 -194054740 - L2 LINE L2 -137 3176 2867 1145 147 0 0 chr4 8273797 8273974 -194054373 + AluSg/x SINE Alu 136 312 0 307 235 20 20 chr4 8273990 8274092 -194054255 + Charlie7 DNA MER1_type 67 168 -2444 2149 284 86 25 chr4 8274150 8275261 -194053086 + Charlie7 DNA MER1_type 1428 2605 -7 204 100 25 0 chr4 8275873 8275913 -194052434 + L2 LINE L2 3014 3054 -218 196 320 0 13 chr4 8276084 8276162 -194052185 + L2 LINE L2 2909 2985 -287 2150 99 0 17 chr4 8277947 8278249 -194050098 - AluSg SINE Alu -13 297 1 2024 214 55 88 chr4 8278714 8279313 -194049034 + MER119 DNA MER1_type 5 583 0 5306 181 33 9 chr4 8279340 8280391 -194047956 + L1MC3 LINE L1 6708 7783 -2 252 200 92 0 chr4 8280518 8280583 -194047764 + MLT1J1 LTR MaLR 66 136 -310 247 215 92 0 chr4 8280608 8280673 -194047674 + MLT1J1 LTR MaLR 66 136 -310 353 287 25 0 chr4 8280698 8280822 -194047525 + MLT1J2 LTR MaLR 67 194 -215 204 308 25 17 chr4 8281335 8281455 -194046892 + CT-rich Low_complexity Low_complexity 3 123 0 278 202 0 45 chr4 8282271 8282360 -194045987 + (CACCAT)n Simple_repeat Simple_repeat 2 86 0 655 116 0 101 chr4 8282371 8282570 -194045777 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 655 116 0 101 chr4 8282584 8282783 -194045564 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 340 97 32 0 chr4 8282795 8282857 -194045490 + (CACCAT)n Simple_repeat Simple_repeat 5 68 0 688 176 23 6 chr4 8282868 8283044 -194045303 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 208 107 0 0 chr4 8283044 8283072 -194045275 + (CAT)n Simple_repeat Simple_repeat 1 28 0 318 317 137 22 chr4 8283581 8283764 -194044583 - MIR SINE MIR -6 256 53 608 310 70 0 chr4 8283808 8284021 -194044326 + MIR SINE MIR 35 262 0 220 98 0 59 chr4 8285111 8285162 -194043185 + (TTCC)n Simple_repeat Simple_repeat 4 51 0 249 318 163 20 chr4 8285397 8285796 -194042551 + L2 LINE L2 2817 3272 0 599 365 73 0 chr4 8285856 8286212 -194042135 + L3 LINE CR1 767 1148 -429 581 324 14 19 chr4 8286225 8286438 -194041909 + MIR SINE MIR 8 219 -43 2018 137 67 50 chr4 8287653 8287941 -194040406 + THE1B LTR MaLR 1 298 -66 1954 142 0 13 chr4 8287941 8288251 -194040096 + AluSx SINE Alu 6 311 -1 2018 137 67 50 chr4 8288251 8288320 -194040027 + THE1B LTR MaLR 298 364 0 251 175 140 0 chr4 8288380 8288437 -194039910 - MIR SINE MIR -117 145 81 427 176 0 0 chr4 8288861 8288935 -194039412 + MIR SINE MIR 79 152 -110 2908 235 46 51 chr4 8291189 8291228 -194037119 - L1ME1 LINE L1 -3 6163 6125 2031 101 0 29 chr4 8291228 8291544 -194036803 - AluSq SINE Alu -6 307 1 2908 235 46 51 chr4 8291544 8292403 -194035944 - L1ME1 LINE L1 -41 6125 5263 189 0 0 0 chr4 8292403 8292424 -194035923 + (TA)n Simple_repeat Simple_repeat 2 22 0 2218 103 3 13 chr4 8292424 8292736 -194035611 - AluSx SINE Alu -3 309 1 2908 235 46 51 chr4 8292736 8293053 -194035294 - L1ME1 LINE L1 -902 5264 4940 600 14 0 0 chr4 8293053 8293122 -194035225 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 2908 235 46 51 chr4 8293122 8293168 -194035179 - L1ME1 LINE L1 -1226 4940 4895 348 183 175 8 chr4 8294816 8294936 -194033411 + MIR SINE MIR 92 231 -31 343 275 73 28 chr4 8295131 8295212 -194033135 - L1ME4a LINE L1 -1 6120 6044 2259 108 0 0 chr4 8295212 8295519 -194032828 + AluSx SINE Alu 1 307 -5 343 275 73 28 chr4 8295519 8295615 -194032732 - L1ME4a LINE L1 -77 6044 5935 307 305 152 48 chr4 8296008 8296218 -194032129 - L1ME4a LINE L1 -203 5918 5687 2356 111 43 25 chr4 8297234 8297602 -194030745 - THE1C LTR MaLR 0 375 1 236 318 122 0 chr4 8298494 8298601 -194029746 - MIR SINE MIR -80 182 63 313 209 118 18 chr4 8299611 8299721 -194028626 - MER113 DNA MER1_type? -302 219 99 2252 82 7 0 chr4 8299722 8300015 -194028332 + AluSg SINE Alu 6 300 -10 954 203 45 21 chr4 8301761 8302003 -194026344 - ORSL DNA AcHobo -20 255 8 235 364 79 0 chr4 8303126 8303266 -194025081 + MIR SINE MIR 87 237 -25 602 232 3 3 chr4 8304988 8305304 -194023043 + (CA)n Simple_repeat Simple_repeat 1 316 0 503 239 6 0 chr4 8305318 8305485 -194022862 + (CA)n Simple_repeat Simple_repeat 1 168 0 545 247 0 4 chr4 8305499 8305776 -194022571 + (CA)n Simple_repeat Simple_repeat 1 275 0 378 271 0 0 chr4 8305790 8305930 -194022417 + (CA)n Simple_repeat Simple_repeat 1 140 0 560 240 6 0 chr4 8305946 8306125 -194022222 + (CA)n Simple_repeat Simple_repeat 1 180 0 629 234 0 6 chr4 8306139 8306461 -194021886 + (CA)n Simple_repeat Simple_repeat 1 319 0 228 262 0 0 chr4 8306985 8307046 -194021301 - L1MB3 LINE L1 -1 6182 6122 241 311 66 0 chr4 8307884 8308006 -194020341 - L2 LINE L2 0 3272 3143 198 195 0 0 chr4 8309409 8309450 -194018897 - MIR SINE MIR -113 149 109 261 326 47 0 chr4 8310053 8310139 -194018208 + MIR3 SINE MIR 97 186 -22 574 250 8 15 chr4 8310320 8310452 -194017895 - MER45A DNA AcHobo -2 176 46 260 291 64 81 chr4 8311120 8311292 -194017055 + MIR SINE MIR 46 214 -48 577 315 7 0 chr4 8311818 8311964 -194016383 + MIR SINE MIR 8 154 -108 417 328 88 46 chr4 8312605 8312910 -194015437 - L2 LINE L2 -25 3247 2930 187 233 167 0 chr4 8313200 8313260 -194015087 + MIR3 SINE MIR 125 194 -14 207 0 0 0 chr4 8314014 8314037 -194014310 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 316 265 69 0 chr4 8316668 8316770 -194011577 + MIR SINE MIR 117 225 -37 327 302 88 39 chr4 8316888 8317093 -194011254 - L1MB7 LINE L1 -163 6021 5807 226 264 23 93 chr4 8317367 8317496 -194010851 - L1MB7 LINE L1 -672 5449 5330 530 272 92 17 chr4 8318226 8318399 -194009948 - MER5A DNA MER1_type 0 189 4 427 314 31 54 chr4 8318436 8318736 -194009611 + L2 LINE L2 2776 3068 -245 252 0 0 0 chr4 8318802 8318830 -194009517 + (CCA)n Simple_repeat Simple_repeat 3 30 0 1086 160 0 0 chr4 8318944 8319735 -194008612 + (TGGA)n Simple_repeat Simple_repeat 1 791 0 384 321 71 9 chr4 8321052 8321264 -194007083 - L1ME LINE L1 -645 5517 5293 8053 205 55 12 chr4 8322086 8322304 -194006043 - L1PB4 LINE L1 -4 6344 6137 207 0 0 0 chr4 8322304 8322327 -194006020 + (TA)n Simple_repeat Simple_repeat 2 24 0 8053 205 55 12 chr4 8322327 8327528 -194000819 - L1PB4 LINE L1 -211 6137 772 3897 167 14 0 chr4 8327538 8328238 -194000109 - L1PB4 LINE L1 -4618 710 1 241 223 98 89 chr4 8328778 8328890 -193999457 + MIR SINE MIR 105 217 -45 2371 92 0 0 chr4 8329276 8329581 -193998766 - AluSc SINE Alu -4 305 1 369 320 4 17 chr4 8329674 8329871 -193998476 + CT-rich Low_complexity Low_complexity 1 194 0 246 171 26 13 chr4 8329878 8329954 -193998393 + (TCCA)n Simple_repeat Simple_repeat 1 77 0 2045 128 20 0 chr4 8331719 8332016 -193996331 - AluSx SINE Alu -9 303 1 277 354 33 39 chr4 8332028 8332209 -193996138 - L1ME LINE L1 -302 5819 5640 232 359 39 55 chr4 8332472 8332781 -193995566 - L2 LINE L2 -43 3229 2926 1767 202 35 86 chr4 8332781 8333429 -193994918 - LTR6A LTR ERV1 0 564 1 1608 231 53 45 chr4 8333499 8333993 -193994354 - MLT1D LTR MaLR -7 498 1 187 312 117 0 chr4 8334099 8334176 -193994171 - L2 LINE L2 -8 3305 3220 356 352 120 13 chr4 8334237 8334606 -193993741 - L2 LINE L2 -227 3045 2635 351 289 0 12 chr4 8334797 8335298 -193993049 + (CA)n Simple_repeat Simple_repeat 1 494 0 322 240 53 93 chr4 8335806 8335956 -193992391 + MIR3 SINE MIR 31 174 -34 413 342 62 65 chr4 8336474 8336810 -193991537 - L2 LINE L2 -20 3252 2918 1423 241 78 37 chr4 8337000 8337511 -193990836 - MLT1H LTR MaLR 0 549 18 589 252 43 5 chr4 8338151 8338537 -193989810 - MLT1J2 LTR MaLR -7 443 15 379 249 163 11 chr4 8338549 8338731 -193989616 + MIR SINE MIR 6 214 -48 545 272 121 13 chr4 8339650 8339874 -193988473 + MIR SINE MIR 14 261 -1 203 257 27 81 chr4 8340282 8340356 -193987991 + MIR3 SINE MIR 88 157 -51 322 286 169 0 chr4 8341037 8341215 -193987132 + L2 LINE L2 2562 2769 -545 288 318 28 9 chr4 8341615 8341722 -193986625 + L2 LINE L2 3154 3262 -51 810 219 12 0 chr4 8341754 8341914 -193986433 - FRAM SINE Alu -17 159 1 679 210 0 80 chr4 8342105 8342281 -193986066 + MER63 DNA MER1_type 1 788 -48 301 262 28 21 chr4 8342525 8342634 -193985713 + MIR SINE MIR 63 171 -37 213 318 15 0 chr4 8342837 8342903 -193985444 - MIR SINE MIR -77 131 65 234 188 21 0 chr4 8344247 8344295 -193984052 - MIR3 SINE MIR -48 160 112 630 192 0 0 chr4 8344785 8344884 -193983463 + FLAM_C SINE Alu 12 110 -33 357 366 36 5 chr4 8344942 8345136 -193983211 - MIR SINE MIR -3 259 60 1193 195 174 50 chr4 8345889 8346268 -193982079 - MSTB LTR MaLR 0 426 1 260 274 189 37 chr4 8346671 8347233 -193981114 - L2 LINE L2 -1 3271 2632 191 259 19 0 chr4 8347366 8347420 -193980927 - MIR SINE MIR -119 143 89 506 269 39 19 chr4 8348139 8348295 -193980052 + MIR SINE MIR 70 228 -34 243 0 0 0 chr4 8348696 8348723 -193979624 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 204 309 24 24 chr4 8349305 8349389 -193978958 - L2 LINE L2 -13 3259 3176 357 233 29 0 chr4 8350727 8350830 -193977517 - MIR SINE MIR -62 146 88 341 338 159 7 chr4 8351466 8351611 -193976736 + MIR SINE MIR 4 170 -92 603 279 29 113 chr4 8354919 8355335 -193973012 - L1ME3A LINE L1 -283 5887 5507 1713 236 158 61 chr4 8355353 8356055 -193972292 - MER21B LTR ERV1 -81 782 13 1132 264 138 114 chr4 8356243 8357493 -193970854 - L1MC4 LINE L1 -124 7918 6623 180 0 0 0 chr4 8357493 8357513 -193970834 + (GGAA)n Simple_repeat Simple_repeat 4 23 0 1132 264 138 114 chr4 8357513 8357791 -193970556 - L1MC4 LINE L1 -1419 6623 6353 615 306 96 16 chr4 8357871 8358234 -193970113 - L1ME3A LINE L1 -139 6031 5640 394 117 0 164 chr4 8360090 8360304 -193968043 + (CCCCCA)n Simple_repeat Simple_repeat 2 180 0 225 104 0 130 chr4 8360354 8360431 -193967916 + (CCCCCA)n Simple_repeat Simple_repeat 3 69 0 329 266 63 28 chr4 8360721 8360864 -193967483 - MLT1K LTR MaLR -369 219 72 184 213 21 21 chr4 8361437 8361484 -193966863 + L2 LINE L2 3214 3260 -12 426 39 0 0 chr4 8361898 8361950 -193966397 + (TG)n Simple_repeat Simple_repeat 2 53 0 236 338 23 30 chr4 8362049 8362182 -193966165 + MIR3 SINE MIR 13 144 -64 309 320 70 66 chr4 8363089 8363345 -193965002 - L2 LINE L2 -5 3267 3011 225 335 50 19 chr4 8365236 8365397 -193962950 + HAL1b LINE L1 482 647 -701 188 274 286 24 chr4 8367373 8367621 -193960726 - L2 LINE L2 -81 3232 2920 289 297 239 7 chr4 8367816 8367971 -193960376 - L2 LINE L2 -541 2773 2583 350 343 119 21 chr4 8367981 8368267 -193960080 - L2 LINE L2 -870 2444 2131 562 211 29 0 chr4 8368447 8368622 -193959725 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 856 163 12 0 chr4 8368649 8368821 -193959526 + (TCCA)n Simple_repeat Simple_repeat 2 175 0 264 320 16 8 chr4 8369105 8369227 -193959120 + MIR SINE MIR 94 216 -46 242 273 0 0 chr4 8369696 8369751 -193958596 - MIR SINE MIR -68 140 86 998 213 63 14 chr4 8370012 8370219 -193958128 - MER20 DNA MER1_type 0 219 3 454 248 51 15 chr4 8371432 8371569 -193956778 + MIR SINE MIR 46 187 -75 860 177 6 0 chr4 8373188 8373363 -193954984 + (TCCA)n Simple_repeat Simple_repeat 4 179 0 839 201 3 0 chr4 8373401 8373759 -193954588 + (TCCA)n Simple_repeat Simple_repeat 1 359 0 242 380 124 31 chr4 8373792 8374244 -193954103 - L2 LINE L2 0 3313 2820 456 236 24 0 chr4 8374291 8374414 -193953933 - MER58C DNA MER1_type 0 215 90 1251 225 104 12 chr4 8374423 8374846 -193953501 - MLT1C LTR MaLR 0 467 6 282 368 31 25 chr4 8375063 8375226 -193953121 - MIR SINE MIR -10 252 89 265 279 103 37 chr4 8375430 8375566 -193952781 - L3 LINE CR1 -89 1488 1344 814 221 124 0 chr4 8376116 8376374 -193951973 - MLT1C LTR MaLR -153 314 25 201 299 42 45 chr4 8376404 8376551 -193951796 - MIR SINE MIR -94 114 9 732 171 6 23 chr4 8377298 8377474 -193950873 + (ATGGTG)n Simple_repeat Simple_repeat 4 176 0 300 290 0 0 chr4 8377448 8377572 -193950775 + (TGG)n Simple_repeat Simple_repeat 1 124 0 * 610 208 17 11 chr4 8377572 8377750 -193950597 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 2035 105 0 20 chr4 8379583 8379877 -193948470 + AluJb SINE Alu 23 310 -2 504 328 25 20 chr4 8380047 8380309 -193948038 + MIR SINE MIR 2 262 0 1552 204 40 3 chr4 8381012 8381118 -193947229 + AluJo SINE Alu 1 102 -210 2030 134 23 7 chr4 8381118 8381425 -193946922 - AluSx SINE Alu 0 312 1 1552 204 40 3 chr4 8381425 8381617 -193946730 + AluJo SINE Alu 102 310 -2 318 257 119 9 chr4 8381640 8381749 -193946598 + L1M4 LINE L1 2673 2793 -3353 397 278 98 40 chr4 8382026 8382199 -193946148 + MIR SINE MIR 68 250 -12 347 287 130 0 chr4 8383629 8383737 -193944610 - L2 LINE L2 -1 3312 3191 1103 193 44 139 chr4 8383750 8384159 -193944188 + MLT1A2 LTR MaLR 1 370 -4 560 277 113 27 chr4 8384170 8384499 -193943848 - L2 LINE L2 -129 3184 2828 544 278 44 15 chr4 8384864 8385069 -193943278 + MLT1J2 LTR MaLR 240 450 0 186 43 0 0 chr4 8385725 8385748 -193942599 + (TC)n Simple_repeat Simple_repeat 1 23 0 215 299 51 26 chr4 8385868 8385985 -193942362 - MIR SINE MIR -72 136 17 238 273 0 0 chr4 8386885 8386940 -193941407 - L2 LINE L2 -10 3262 3208 201 265 118 0 chr4 8387437 8387505 -193940842 + MIR3 SINE MIR 92 167 -41 274 303 107 0 chr4 8387991 8388113 -193940234 + MIR3 SINE MIR 29 163 -45 314 279 81 62 chr4 8388119 8388280 -193940067 - L2 LINE L2 0 3272 3109 208 231 26 0 chr4 8388393 8388471 -193939876 + (TGGA)n Simple_repeat Simple_repeat 1 80 0 623 225 21 0 chr4 8388490 8388770 -193939577 + (TGGA)n Simple_repeat Simple_repeat 1 285 0 204 178 0 44 chr4 8388771 8388816 -193939531 + GA-rich Low_complexity Low_complexity 3 45 0 2168 113 0 3 chr4 8391593 8391903 -193936444 + AluSq SINE Alu 1 309 -4 461 296 39 82 chr4 8391909 8392115 -193936232 + MIR SINE MIR 66 262 0 604 304 68 27 chr4 8392815 8393035 -193935312 + MIR SINE MIR 13 241 -21 26 30 0 0 chr4 8393374 8393407 -193934940 + AT_rich Low_complexity Low_complexity 1 33 0 303 311 0 49 chr4 8393426 8393548 -193934799 - L2 LINE L2 -1 3312 3197 3144 222 34 4 chr4 8393677 8394502 -193933845 + L1M4 LINE L1 2412 3261 -2885 194 283 19 0 chr4 8394806 8394859 -193933488 - MIR SINE MIR -65 143 90 180 359 39 10 chr4 8394977 8395080 -193933267 + MIR3 SINE MIR 97 202 -6 316 248 204 0 chr4 8396761 8396874 -193931473 - MIR SINE MIR -119 143 8 309 357 8 16 chr4 8397028 8397157 -193931190 - MIR SINE MIR -118 144 17 238 264 35 0 chr4 8398054 8398141 -193930206 - MER45 DNA AcHobo -1466 115 26 190 227 68 0 chr4 8398242 8398286 -193930061 + L2 LINE L2 3244 3290 -23 2261 206 27 2 chr4 8398311 8398749 -193929598 + L1MB5 LINE L1 5718 6166 -8 372 298 128 30 chr4 8398967 8399202 -193929145 - L2 LINE L2 -109 3163 2906 283 241 60 0 chr4 8400035 8400118 -193928229 - MER81 DNA DNA 0 114 27 332 298 0 10 chr4 8400214 8400318 -193928029 + MIR SINE MIR 45 147 -61 214 316 13 13 chr4 8400415 8400494 -193927853 + MIR SINE MIR 67 145 -117 1410 189 79 16 chr4 8400678 8401044 -193927303 + MLT1C LTR MaLR 3 391 -76 22 56 0 0 chr4 8401711 8401747 -193926600 + AT_rich Low_complexity Low_complexity 1 36 0 224 297 203 7 chr4 8401812 8401950 -193926397 + MIR3 SINE MIR 3 167 -41 297 51 0 0 chr4 8401994 8402033 -193926314 + (TCCA)n Simple_repeat Simple_repeat 1 39 0 931 71 20 45 chr4 8402045 8402368 -193925979 + (TCCA)n Simple_repeat Simple_repeat 1 315 0 377 258 129 12 chr4 8402878 8403041 -193925306 + L2 LINE L2 2875 3056 -257 196 275 12 62 chr4 8403222 8403302 -193925045 + MIR3 SINE MIR 127 202 -6 310 331 128 12 chr4 8403426 8403598 -193924749 - MIR SINE MIR -46 216 25 200 360 27 36 chr4 8404626 8404737 -193923610 + MIR SINE MIR 35 144 -118 282 301 109 65 chr4 8405410 8405812 -193922535 + L2 LINE L2 2810 3229 -43 216 192 19 39 chr4 8405908 8405960 -193922387 - L2 LINE L2 -14 3258 3208 250 286 134 9 chr4 8406210 8406322 -193922025 - MER96 DNA MER1_type? -39 136 11 189 299 41 62 chr4 8406857 8406954 -193921393 + MIR3 SINE MIR 88 182 -26 316 309 158 29 chr4 8407426 8407628 -193920719 - MIR SINE MIR -43 219 3 196 231 0 0 chr4 8408322 8408361 -193919986 + L2 LINE L2 3263 3301 -12 222 362 51 22 chr4 8408469 8408607 -193919740 + MIR3 SINE MIR 5 146 -62 334 220 66 0 chr4 8408678 8408769 -193919578 + MER5A DNA MER1_type 10 106 -83 187 267 287 0 chr4 8408703 8408804 -193919543 - MER5A DNA MER1_type -24 165 36 * 190 332 72 9 chr4 8409209 8409432 -193918915 + L2 LINE L2 2738 2974 -340 211 336 60 0 chr4 8409469 8409585 -193918762 + L2 LINE L2 3141 3263 -9 182 331 83 53 chr4 8409614 8409783 -193918564 + MIR SINE MIR 45 218 -44 1583 202 80 36 chr4 8410091 8410506 -193917841 + MLT1D LTR MaLR 1 433 -72 532 216 16 0 chr4 8410511 8410636 -193917711 - MER47A DNA MER2_type 0 366 240 530 232 0 0 chr4 8410637 8410749 -193917598 - MER47A DNA MER2_type -254 112 1 351 203 0 0 chr4 8410749 8410818 -193917529 + MLT1D LTR MaLR 437 505 0 417 290 36 67 chr4 8411953 8412110 -193916237 + MIR SINE MIR 45 208 -54 2120 114 0 31 chr4 8412110 8412427 -193915920 + AluSx SINE Alu 1 307 -5 417 290 36 67 chr4 8412427 8412463 -193915884 + MIR SINE MIR 208 244 -18 743 263 91 45 chr4 8412934 8413330 -193915017 + MLT1C LTR MaLR 54 467 0 220 246 87 43 chr4 8414337 8414475 -193913872 + L2 LINE L2 2921 3064 -208 205 378 64 13 chr4 8414685 8414841 -193913506 - L3 LINE CR1 -7 1570 1407 198 0 0 0 chr4 8415024 8415046 -193913301 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 223 254 0 17 chr4 8415121 8415180 -193913167 - MIR SINE MIR -56 152 95 211 327 84 0 chr4 8415448 8415555 -193912792 - MIR SINE MIR -145 117 2 458 317 49 22 chr4 8416265 8416448 -193911899 + MIR SINE MIR 2 189 -73 197 330 152 35 chr4 8418513 8418931 -193909416 + L2 LINE L2 2738 3268 -45 601 220 6 19 chr4 8418931 8419081 -193909266 - L1 LINE L1 -1764 4382 4233 2700 137 2 5 chr4 8419081 8419495 -193908852 + L1PB3 LINE L1 5734 6147 -7 332 167 14 0 chr4 8419526 8419598 -193908749 + GA-rich Low_complexity Low_complexity 3 75 0 829 161 0 0 chr4 8420290 8420427 -193907920 - AluJo SINE Alu -175 137 1 1758 176 0 29 chr4 8420719 8421025 -193907322 - AluJo SINE Alu -15 297 1 608 210 105 6 chr4 8421099 8421280 -193907067 + L1MCc LINE L1 1167 1365 -5058 * 1783 236 31 5 chr4 8421273 8421718 -193906629 + L1ME1 LINE L1 5705 6161 -5 300 291 220 6 chr4 8421798 8421980 -193906367 - MIR SINE MIR -21 241 21 488 295 84 40 chr4 8422135 8422362 -193905985 + MIR SINE MIR 22 258 -4 317 154 0 0 chr4 8422489 8422541 -193905806 - MLT1B LTR MaLR -317 73 22 206 298 0 0 chr4 8423858 8423905 -193904442 - MIR SINE MIR -142 120 74 204 296 0 102 chr4 8424062 8424160 -193904187 + L2 LINE L2 3185 3272 0 833 139 11 11 chr4 8424183 8424363 -193903984 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 210 138 0 125 chr4 8424756 8424836 -193903511 + (CCCCCA)n Simple_repeat Simple_repeat 3 72 0 384 98 0 152 chr4 8424875 8425039 -193903308 + (CCCCCA)n Simple_repeat Simple_repeat 3 141 0 1269 249 64 23 chr4 8425266 8425703 -193902644 - MLT1C LTR MaLR -6 461 7 1023 264 162 26 chr4 8426631 8427415 -193900932 - L2 LINE L2 -8 3305 2421 260 258 16 32 chr4 8428466 8428590 -193899757 + CT-rich Low_complexity Low_complexity 3 124 0 204 40 0 0 chr4 8428660 8428685 -193899662 + (GGGGA)n Simple_repeat Simple_repeat 2 26 0 320 130 19 0 chr4 8428875 8428929 -193899418 - MLT1C LTR MaLR -409 58 4 390 173 13 0 chr4 8429597 8429672 -193898675 - MLT1C LTR MaLR -69 398 323 213 265 0 0 chr4 8429912 8429961 -193898386 - MIR SINE MIR -111 151 103 345 189 18 18 chr4 8430885 8430996 -193897351 + CT-rich Low_complexity Low_complexity 3 113 0 873 175 11 23 chr4 8431009 8431464 -193896883 + CT-rich Low_complexity Low_complexity 1 449 0 345 310 40 38 chr4 8431472 8431635 -193896712 + MIR SINE MIR 5 180 -62 861 175 2 0 chr4 8432770 8433229 -193895118 + (TGAG)n Simple_repeat Simple_repeat 1 460 0 267 234 0 0 chr4 8433243 8433320 -193895027 + (TGAG)n Simple_repeat Simple_repeat 3 79 0 195 42 0 0 chr4 8433348 8433372 -193894975 + (CAG)n Simple_repeat Simple_repeat 1 24 0 183 299 98 43 chr4 8433741 8433905 -193894442 - L2 LINE L2 -520 2794 2622 2142 123 0 3 chr4 8434213 8434514 -193893833 - AluSx SINE Alu -12 300 1 349 318 73 7 chr4 8434679 8434830 -193893517 + MIR SINE MIR 32 192 -70 264 291 0 44 chr4 8434952 8435134 -193893213 + (TTGGGG)n Simple_repeat Simple_repeat 2 175 0 303 293 0 37 chr4 8435236 8435566 -193892781 + (TTGGGG)n Simple_repeat Simple_repeat 1 317 0 222 263 0 65 chr4 8435776 8435962 -193892385 + (TTGGGG)n Simple_repeat Simple_repeat 2 175 0 219 296 12 19 chr4 8435912 8436074 -193892273 + (GGGTG)n Simple_repeat Simple_repeat 2 162 0 * 208 274 0 65 chr4 8436006 8436192 -193892155 + (TTGGGG)n Simple_repeat Simple_repeat 2 175 0 * 260 278 11 33 chr4 8436144 8436324 -193892023 + (GGGTG)n Simple_repeat Simple_repeat 2 177 0 * 313 255 0 54 chr4 8436218 8436402 -193891945 + (TTGGGG)n Simple_repeat Simple_repeat 2 175 0 235 311 0 33 chr4 8436316 8436496 -193891851 + (TTAGGG)n Simple_repeat Simple_repeat 2 175 0 * 279 296 3 35 chr4 8436708 8437055 -193891292 + (TTGGGG)n Simple_repeat Simple_repeat 1 335 0 318 308 0 27 chr4 8437249 8437590 -193890757 + (TTGGGG)n Simple_repeat Simple_repeat 1 331 0 284 290 0 32 chr4 8437618 8437773 -193890574 + (TTGGGG)n Simple_repeat Simple_repeat 2 151 0 212 374 0 0 chr4 8437712 8437886 -193890461 + (TTAGGG)n Simple_repeat Simple_repeat 2 175 0 * 2116 171 45 3 chr4 8437979 8438353 -193889994 - MLT1B LTR MaLR 0 390 1 252 0 0 0 chr4 8438376 8438404 -193889943 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 190 333 111 47 chr4 8438880 8439051 -193889296 + MIR SINE MIR 8 189 -73 210 278 93 62 chr4 8439097 8439194 -193889153 + L2 LINE L2 3212 3311 -2 418 332 124 13 chr4 8440631 8440938 -193887409 - L2 LINE L2 0 3272 2932 259 312 35 30 chr4 8441129 8441270 -193887077 + MIR SINE MIR 14 149 -59 319 267 30 20 chr4 8441415 8441516 -193886831 + MIR SINE MIR 98 199 -63 339 331 48 0 chr4 8444248 8444372 -193883975 + MIR SINE MIR 29 158 -104 239 316 25 0 chr4 8444647 8444726 -193883621 + L2 LINE L2 3173 3253 -19 273 269 234 28 chr4 8445048 8445193 -193883154 - MIR SINE MIR -80 182 8 180 262 90 107 chr4 8445293 8445415 -193882932 + MIR SINE MIR 28 147 -115 357 329 79 73 chr4 8446040 8446629 -193881718 - L2 LINE L2 0 3272 2649 223 261 77 0 chr4 8447026 8447091 -193881256 + MIR SINE MIR 123 192 -70 408 286 64 14 chr4 8447864 8448004 -193880343 - MIR SINE MIR -83 179 33 508 233 78 49 chr4 8448140 8448471 -193879876 - MLT1J2 LTR MaLR -23 427 46 197 357 47 0 chr4 8448567 8448696 -193879651 - L2 LINE L2 -620 2694 2560 197 336 219 0 chr4 8449674 8449802 -193878545 + MIR3 SINE MIR 45 200 -8 245 389 108 32 chr4 8449969 8450311 -193878036 - L3 LINE CR1 -253 1324 957 735 269 45 14 chr4 8450869 8451092 -193877255 + MIR SINE MIR 32 261 -1 738 202 0 0 chr4 8451104 8451282 -193877065 + (TGG)n Simple_repeat Simple_repeat 2 179 0 240 67 0 0 chr4 8451282 8451312 -193877035 + (ATG)n Simple_repeat Simple_repeat 1 30 0 763 244 36 0 chr4 8451619 8451787 -193876560 - MER5B DNA MER1_type -4 174 1 225 247 14 41 chr4 8452085 8452158 -193876189 - MIR SINE MIR -65 143 73 609 209 0 4 chr4 8452160 8452414 -193875933 + (TCCA)n Simple_repeat Simple_repeat 1 252 0 208 333 48 0 chr4 8452834 8452897 -193875450 + L2 LINE L2 3233 3298 -15 328 306 60 16 chr4 8452920 8453103 -193875244 - L2 LINE L2 -190 3123 2933 190 320 117 52 chr4 8454202 8454433 -193873914 - L2 LINE L2 -121 3151 2906 203 293 0 0 chr4 8455470 8455528 -193872819 - L2 LINE L2 -335 2978 2921 274 301 32 49 chr4 8455868 8455991 -193872356 + L2 LINE L2 2634 2754 -560 279 269 23 46 chr4 8456051 8456181 -193872166 + L2 LINE L2 3133 3259 -13 261 119 0 0 chr4 8456181 8456223 -193872124 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 1286 238 121 12 chr4 8456737 8457158 -193871189 - MLT1C LTR MaLR 0 467 1 188 135 27 0 chr4 8457705 8457742 -193870605 + (CA)n Simple_repeat Simple_repeat 1 38 0 948 206 127 57 chr4 8458251 8458567 -193869780 - MLT2C1 LTR ERVL -47 350 13 185 333 61 27 chr4 8458722 8458869 -193869478 + L2 LINE L2 3045 3196 -117 207 177 122 68 chr4 8459314 8459461 -193868886 + (GCTG)n Simple_repeat Simple_repeat 3 157 0 410 352 116 0 chr4 8460300 8460618 -193867729 + L2 LINE L2 2957 3311 -2 270 326 12 0 chr4 8460639 8460725 -193867622 + L2 LINE L2 3184 3270 -2 1076 255 28 31 chr4 8460996 8461545 -193866802 - MER77 LTR ERV1 -7 598 1 283 265 39 29 chr4 8461847 8461949 -193866398 - L2 LINE L2 -20 3252 3150 206 269 90 0 chr4 8462511 8462589 -193865758 + MER91A DNA MER1_type 21 105 -91 1189 230 90 35 chr4 8464959 8465123 -193863224 + MLT1C LTR MaLR 1 155 -312 2374 66 0 10 chr4 8465123 8465427 -193862920 + AluY SINE Alu 1 301 -10 1189 230 90 35 chr4 8465427 8465687 -193862660 + MLT1C LTR MaLR 155 458 -9 1444 54 0 16 chr4 8465829 8466015 -193862332 + L1PA8 LINE L1 5990 6172 0 674 257 138 20 chr4 8468706 8469137 -193859210 - MLT1D LTR MaLR 0 390 2 272 230 11 81 chr4 8471128 8471215 -193857132 - L2 LINE L2 0 3272 3192 189 296 0 0 chr4 8473064 8473108 -193855239 + MIR SINE MIR 219 262 0 245 327 82 62 chr4 8473229 8473678 -193854669 + L2 LINE L2 2811 3268 -4 237 261 0 31 chr4 8473745 8473810 -193854537 + MIR3 SINE MIR 96 158 -50 1644 194 84 19 chr4 8474360 8474788 -193853559 - L1MA8 LINE L1 -278 6013 5558 540 268 76 98 chr4 8475048 8475496 -193852851 - MLT1J2 LTR MaLR -10 440 3 273 356 70 0 chr4 8475636 8475751 -193852596 + MIR3 SINE MIR 47 169 -39 414 114 0 0 chr4 8476140 8476210 -193852137 + (CA)n Simple_repeat Simple_repeat 2 71 0 448 365 88 55 chr4 8476240 8476482 -193851865 - L1ME4a LINE L1 -158 5963 5704 1908 171 44 22 chr4 8476482 8476844 -193851503 - MLT1A2 LTR MaLR 0 374 5 448 365 88 55 chr4 8476844 8476963 -193851384 - L1ME4a LINE L1 -417 5704 5590 320 307 63 0 chr4 8477524 8477651 -193850696 + MIR SINE MIR 48 182 -80 274 264 110 11 chr4 8477755 8477846 -193850501 - MIR3 SINE MIR -3 205 106 257 343 97 27 chr4 8478356 8478533 -193849814 - MIR SINE MIR -33 175 3 265 271 0 0 chr4 8478568 8478638 -193849709 + C-rich Low_complexity Low_complexity 1 70 0 263 295 103 12 chr4 8479147 8479340 -193849007 - MIR3 SINE MIR -44 218 2 503 326 45 22 chr4 8479768 8479992 -193848355 - MIR SINE MIR -16 246 18 209 279 0 7 chr4 8481229 8481365 -193846982 + (TG)n Simple_repeat Simple_repeat 1 135 0 186 326 141 11 chr4 8482139 8482231 -193846116 - L2 LINE L2 -5 3267 3164 257 312 21 71 chr4 8484790 8484931 -193843416 - MIR3 SINE MIR -71 137 4 383 133 76 0 chr4 8485582 8485687 -193842660 + (CAGAGA)n Simple_repeat Simple_repeat 2 114 0 387 340 98 16 chr4 8486553 8486747 -193841600 - MIR SINE MIR -21 241 32 532 229 48 101 chr4 8486750 8486938 -193841409 + MER45A DNA AcHobo 1 178 0 237 325 95 16 chr4 8487687 8487813 -193840534 + MIR SINE MIR 108 243 -19 437 359 30 0 chr4 8487861 8488059 -193840288 + MIR SINE MIR 23 226 -36 186 277 229 0 chr4 8488059 8488142 -193840205 + MIR SINE MIR 82 183 -79 252 184 0 0 chr4 8488607 8488656 -193839691 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 305 313 80 28 chr4 8488723 8488899 -193839448 + MIR SINE MIR 69 253 -9 2136 107 3 7 chr4 8489315 8489624 -193838723 - AluSc SINE Alu -1 308 1 305 195 0 12 chr4 8490335 8490417 -193837930 + GA-rich Low_complexity Low_complexity 4 84 0 307 297 23 62 chr4 8490465 8490501 -193837846 + L1ME4a LINE L1 5998 6034 -87 1990 99 60 0 chr4 8490501 8490785 -193837562 - AluSx SINE Alu -9 303 3 307 297 23 62 chr4 8490785 8490876 -193837471 + L1ME4a LINE L1 6034 6120 -1 254 283 114 18 chr4 8491268 8491434 -193836913 - LTR33A LTR ERVL -73 450 269 204 297 193 36 chr4 8492870 8493062 -193835285 + L2 LINE L2 2926 3147 -166 249 83 0 0 chr4 8493485 8493521 -193834826 + (GA)n Simple_repeat Simple_repeat 2 37 0 243 61 0 0 chr4 8493552 8493591 -193834756 + (CA)n Simple_repeat Simple_repeat 1 72 0 243 61 0 0 chr4 8493591 8493624 -193834723 + (CA)n Simple_repeat Simple_repeat 2 34 0 219 36 0 107 chr4 8493643 8493699 -193834648 + (CAGAGA)n Simple_repeat Simple_repeat 3 52 0 498 122 31 0 chr4 8494498 8494596 -193833751 + GA-rich Low_complexity Low_complexity 2 102 0 416 236 49 24 chr4 8495214 8495337 -193833010 + MIR SINE MIR 20 145 -63 238 318 55 36 chr4 8496553 8496663 -193831684 - L2 LINE L2 -96 3217 3106 1286 223 72 19 chr4 8496825 8497202 -193831145 - MER77 LTR ERV1 -208 397 1 278 302 21 9 chr4 8497292 8497403 -193830944 - MIR SINE MIR -59 149 75 370 272 54 60 chr4 8497963 8498147 -193830200 + MIR3 SINE MIR 7 189 -19 183 100 0 0 chr4 8498222 8498252 -193830095 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 234 324 100 62 chr4 8498258 8498468 -193829879 - L2 LINE L2 -18 3254 3037 191 304 18 0 chr4 8501583 8501639 -193826708 + MIR SINE MIR 82 138 -70 297 263 102 34 chr4 8503132 8503250 -193825097 + MIR SINE MIR 21 146 -116 307 278 56 49 chr4 8503879 8504023 -193824324 + MIR SINE MIR 89 233 -29 280 267 73 63 chr4 8504159 8504350 -193823997 - MIR SINE MIR -43 219 27 385 220 41 23 chr4 8504748 8505046 -193823301 + CT-rich Low_complexity Low_complexity 1 303 0 228 280 0 0 chr4 8505048 8505098 -193823249 + C-rich Low_complexity Low_complexity 1 50 0 301 201 35 41 chr4 8505100 8505269 -193823078 + CT-rich Low_complexity Low_complexity 1 168 0 266 269 74 37 chr4 8505394 8505502 -193822845 - MIR3 SINE MIR -16 192 81 241 175 0 0 chr4 8505536 8505576 -193822771 - L2 LINE L2 -8 3264 3225 472 214 172 38 chr4 8506228 8506572 -193821775 + MLT1C LTR MaLR 7 488 -17 221 257 16 49 chr4 8508004 8508187 -193820160 + CT-rich Low_complexity Low_complexity 4 180 0 327 217 24 0 chr4 8508426 8508509 -193819838 - MER33 DNA MER1_type -6 357 273 1303 269 62 13 chr4 8508510 8508978 -193819369 + L1MC1 LINE L1 5836 6326 -7 762 169 35 20 chr4 8508986 8509187 -193819160 - MER33 DNA MER1_type -76 248 45 1921 197 91 25 chr4 8509365 8509837 -193818510 + MLT1D LTR MaLR 1 503 -2 252 77 0 0 chr4 8510168 8510207 -193818140 + (TC)n Simple_repeat Simple_repeat 1 39 0 193 309 73 73 chr4 8510207 8510343 -193818004 + L2 LINE L2 3137 3272 0 1982 100 38 10 chr4 8510550 8510863 -193817484 - AluSx SINE Alu 0 312 1 1034 233 177 3 chr4 8510924 8511302 -193817045 - MLT1C LTR MaLR -17 450 7 315 278 48 88 chr4 8511308 8511581 -193816766 + L2 LINE L2 2963 3224 -89 286 369 39 27 chr4 8513219 8513401 -193814946 + MIR SINE MIR 7 191 -49 192 242 0 91 chr4 8513408 8513474 -193814873 + MIR SINE MIR 30 89 -119 196 342 133 0 chr4 8514482 8514602 -193813745 + MIR SINE MIR 108 243 -19 195 42 0 0 chr4 8514957 8514981 -193813366 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 357 293 83 11 chr4 8515153 8515334 -193813013 - MIR SINE MIR -21 241 48 195 291 42 28 chr4 8515866 8515989 -193812358 + MIR3 SINE MIR 25 154 -54 201 74 0 0 chr4 8516313 8516340 -193812007 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 1235 214 82 34 chr4 8516604 8517047 -193811300 + MLT1D LTR MaLR 22 467 0 552 330 47 0 chr4 8517561 8517773 -193810574 + MIR SINE MIR 28 249 -13 390 265 104 90 chr4 8518264 8518475 -193809872 + MIR SINE MIR 21 234 -28 193 331 70 14 chr4 8518584 8518726 -193809621 + L3 LINE CR1 1169 1318 -259 229 279 48 57 chr4 8518994 8519099 -193809248 - MIR SINE MIR -29 179 75 462 292 8 0 chr4 8519323 8519443 -193808904 + MIR3 SINE MIR 81 201 -7 200 338 0 14 chr4 8519600 8519674 -193808673 - L2 LINE L2 0 3313 3241 281 356 35 26 chr4 8519703 8519818 -193808529 - L2 LINE L2 -12 3301 3186 1425 158 81 0 chr4 8519873 8520146 -193808201 + AluJo SINE Alu 1 295 -17 216 0 0 0 chr4 8520735 8520759 -193807588 + (CA)n Simple_repeat Simple_repeat 1 24 0 440 280 45 26 chr4 8521085 8521298 -193807049 - MIR SINE MIR -44 218 7 198 280 17 68 chr4 8521403 8521521 -193806826 + MIR3 SINE MIR 81 192 -16 296 295 0 0 chr4 8521700 8521778 -193806569 + CT-rich Low_complexity Low_complexity 2 79 0 233 306 0 24 chr4 8523002 8523087 -193805260 + GA-rich Low_complexity Low_complexity 1 83 0 330 321 116 50 chr4 8523087 8523299 -193805048 + L1M4 LINE L1 3074 3293 -2853 194 61 0 30 chr4 8523299 8523332 -193805015 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 330 321 116 50 chr4 8523332 8523506 -193804841 + L1M4 LINE L1 3293 3454 -2692 385 338 79 46 chr4 8525327 8525721 -193802626 - L1M4 LINE L1 -2771 3375 2972 503 251 133 15 chr4 8525867 8526070 -193802277 + MIR SINE MIR 14 240 -22 203 257 27 81 chr4 8526495 8526569 -193801778 + MIR3 SINE MIR 88 157 -51 210 270 0 0 chr4 8527252 8527326 -193801021 + (CA)n Simple_repeat Simple_repeat 1 74 0 518 360 76 73 chr4 8527600 8528191 -193800156 - L1MC4a LINE L1 -1611 6197 5605 744 195 37 60 chr4 8528813 8528991 -193799356 + L1ME1 LINE L1 5952 6126 -40 2297 95 0 3 chr4 8528991 8529296 -193799051 + AluSq SINE Alu 1 304 -9 744 195 37 60 chr4 8529296 8529332 -193799015 + L1ME1 LINE L1 6126 6161 -5 491 261 15 15 chr4 8530575 8530705 -193797642 + L2 LINE L2 3142 3271 -1 529 279 8 0 chr4 8531246 8531375 -193796972 + MIR SINE MIR 94 223 -39 188 268 36 0 chr4 8533128 8533184 -193795163 - L2 LINE L2 -8 3264 3207 391 296 254 0 chr4 8533197 8533477 -193794870 - L2 LINE L2 -10 3262 2912 483 226 82 7 chr4 8533902 8534048 -193794299 + MLT1B LTR MaLR 29 185 -205 206 23 93 0 chr4 8534049 8534092 -193794255 + CT-rich Low_complexity Low_complexity 2 48 0 575 232 53 0 chr4 8534158 8534309 -193794038 + MLT1B LTR MaLR 232 390 0 330 263 105 15 chr4 8536060 8536193 -193792154 + MIR3 SINE MIR 14 158 -50 234 188 21 0 chr4 8536664 8536712 -193791635 - MIR3 SINE MIR -48 160 112 617 202 0 0 chr4 8537201 8537300 -193791047 + FLAM_C SINE Alu 12 110 -33 377 387 28 5 chr4 8537358 8537570 -193790777 - MIR SINE MIR -3 259 43 1172 192 174 53 chr4 8538301 8538681 -193789666 - MSTB LTR MaLR 0 426 1 267 375 49 34 chr4 8539088 8539355 -193788992 - L2 LINE L2 -1 3312 3042 187 270 209 39 chr4 8539395 8539706 -193788641 - L2 LINE L2 -374 2940 2577 194 333 0 13 chr4 8539773 8539848 -193788499 - MIR SINE MIR -111 151 78 26 0 0 0 chr4 8540088 8540114 -193788233 + GC_rich Low_complexity Low_complexity 1 26 0 624 282 58 25 chr4 8541279 8541644 -193786703 - MER115 DNA AcHobo -259 434 58 205 313 47 0 chr4 8541749 8541813 -193786534 - L3 LINE CR1 -248 1329 1263 294 377 16 0 chr4 8542784 8542906 -193785441 - MIR SINE MIR -64 198 75 2149 138 67 3 chr4 8543374 8543750 -193784597 - MSTA LTR MaLR -27 401 2 180 336 96 0 chr4 8546045 8546149 -193782198 + L2 LINE L2 2982 3095 -177 364 273 64 9 chr4 8547030 8547140 -193781207 - MIR SINE MIR -100 162 47 405 164 10 19 chr4 8547594 8547698 -193780649 + (TGGA)n Simple_repeat Simple_repeat 1 103 0 205 303 130 34 chr4 8547802 8548040 -193780307 - L2 LINE L2 -104 3168 2908 195 304 0 0 chr4 8548248 8548294 -193780053 - MIR SINE MIR 0 262 217 2042 90 34 65 chr4 8548485 8548808 -193779539 + AluSq SINE Alu 1 313 0 2342 87 0 0 chr4 8548979 8549290 -193779057 + AluY SINE Alu 1 311 0 185 313 8 62 chr4 8549638 8549766 -193778581 - L2 LINE L2 -272 3041 2921 255 360 72 0 chr4 8549807 8549946 -193778401 - L2 LINE L2 -558 2756 2608 331 281 99 52 chr4 8550393 8550655 -193777692 - L1M2 LINE L1 -4791 2058 1761 323 350 50 7 chr4 8551643 8551790 -193776557 - MIR SINE MIR -61 147 14 586 223 0 0 chr4 8552677 8552798 -193775549 - MIR SINE MIR -62 200 80 551 312 47 31 chr4 8553388 8553705 -193774642 - L1ME1 LINE L1 -4 6162 5841 2390 66 3 0 chr4 8554850 8555152 -193773195 + AluY SINE Alu 1 303 -8 220 263 18 0 chr4 8555791 8555848 -193772499 + GA-rich Low_complexity Low_complexity 4 61 0 380 198 25 136 chr4 8555947 8556109 -193772238 + L2 LINE L2 3170 3313 0 314 286 76 19 chr4 8556143 8556248 -193772099 + MIR SINE MIR 123 233 -29 270 116 0 0 chr4 8557360 8557403 -193770944 + (CA)n Simple_repeat Simple_repeat 2 44 0 312 256 132 31 chr4 8557405 8557534 -193770813 - L2 LINE L2 -22 3291 3150 233 299 188 17 chr4 8557692 8557809 -193770538 + L2 LINE L2 3136 3272 0 1693 247 46 40 chr4 8558790 8558910 -193769437 + L1ME1 LINE L1 5084 5202 -964 2161 123 0 3 chr4 8558910 8559219 -193769128 + AluSc SINE Alu 1 308 -1 1693 247 46 40 chr4 8559219 8559834 -193768513 + L1ME1 LINE L1 5202 5831 -335 2418 66 0 3 chr4 8560468 8560769 -193767578 - AluY SINE Alu -11 300 1 183 325 12 62 chr4 8561849 8561929 -193766418 + MIR SINE MIR 64 139 -123 323 328 156 25 chr4 8562393 8562885 -193765462 + L2 LINE L2 2682 3247 -25 237 33 0 0 chr4 8562897 8562927 -193765420 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 208 231 0 0 chr4 8562992 8563031 -193765316 + (CA)n Simple_repeat Simple_repeat 2 40 0 289 357 56 16 chr4 8563059 8563185 -193765162 + MIR3 SINE MIR 15 145 -63 266 133 85 55 chr4 8563549 8563714 -193764633 + (CACAA)n Simple_repeat Simple_repeat 4 173 0 * 277 189 16 33 chr4 8563598 8563720 -193764627 + (CAA)n Simple_repeat Simple_repeat 1 120 0 803 244 24 8 chr4 8563924 8564170 -193764177 + MSTA LTR MaLR 179 428 0 308 250 0 33 chr4 8566040 8566132 -193762215 + HsTC2 DNA Tc2 1 89 -1809 853 316 110 24 chr4 8566750 8567382 -193760965 - L2 LINE L2 -3 3310 2613 2050 126 0 3 chr4 8568316 8568610 -193759737 + AluSx SINE Alu 5 297 -15 1328 196 40 108 chr4 8568628 8569127 -193759220 - MLT1C LTR MaLR -2 465 1 789 177 0 0 chr4 8571133 8571280 -193757067 - L1MC/D LINE L1 -710 5634 5488 336 315 20 41 chr4 8571288 8571368 -193756979 + MIR SINE MIR 116 193 -69 192 40 0 0 chr4 8571368 8571393 -193756954 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 336 315 20 41 chr4 8571393 8571458 -193756889 + MIR SINE MIR 193 258 -4 234 275 36 58 chr4 8573234 8573372 -193754975 - MIR SINE MIR -90 172 38 944 135 12 0 chr4 8573484 8573654 -193754693 + (TTCA)n Simple_repeat Simple_repeat 2 173 0 321 274 186 0 chr4 8573665 8573767 -193754580 - L2 LINE L2 -15 3257 3137 220 271 82 16 chr4 8573840 8573962 -193754385 - L2 LINE L2 -1469 1845 1716 * 233 241 0 0 chr4 8573956 8574010 -193754337 + L2 LINE L2 3218 3271 -1 201 262 153 38 chr4 8574304 8574487 -193753860 - L2 LINE L2 -411 2903 2700 350 321 38 2 chr4 8574821 8575025 -193753322 + MIR3 SINE MIR 1 259 -3 308 280 136 8 chr4 8575154 8575279 -193753068 - MIR3 SINE MIR -32 176 36 763 246 158 7 chr4 8575285 8575557 -193752790 - MLT1C LTR MaLR -21 446 134 2289 95 0 0 chr4 8575591 8575887 -193752460 - AluSq SINE Alu -17 296 1 680 133 9 0 chr4 8777052 8777157 -193551190 + AluJo/FRAM SINE Alu 187 292 -20 365 206 10 20 chr4 8777168 8777270 -193551077 + L1MC/D LINE L1 4926 5026 -1120 2589 185 61 3 chr4 8777272 8777868 -193550479 + L1MC/D LINE L1 5191 5814 -428 873 259 119 55 chr4 8778282 8778473 -193549874 - MLT1F1 LTR MaLR -74 519 342 1887 194 36 12 chr4 8778473 8778891 -193549456 - MSTA LTR MaLR 0 428 1 873 259 119 55 chr4 8778891 8779160 -193549187 - MLT1F1 LTR MaLR -251 342 1 1839 171 0 13 chr4 8779194 8779510 -193548837 + AluJb SINE Alu 1 312 0 1286 133 0 0 chr4 8779521 8779694 -193548653 + AluSg SINE Alu 1 173 -137 230 348 35 7 chr4 8780164 8780305 -193548042 + L3 LINE CR1 1229 1373 -204 2122 138 3 0 chr4 8780365 8780655 -193547692 - AluJb SINE Alu -21 291 1 269 123 5 0 chr4 8780736 8780785 -193547562 - MLT2C1 LTR ERVL -2 395 358 1005 145 0 0 chr4 8780801 8780980 -193547367 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 531 253 188 5 chr4 8781123 8781325 -193547022 - MIR SINE MIR -1 261 23 507 281 98 12 chr4 8781689 8781853 -193546494 - MER5B DNA MER1_type 0 178 1 240 239 30 30 chr4 8782234 8782301 -193546046 + MIR SINE MIR 16 82 -126 1673 167 7 4 chr4 8783687 8783957 -193544390 + AluJo SINE Alu 33 303 -9 232 254 0 28 chr4 8783961 8784032 -193544315 - MER112 DNA MER1_type -121 139 71 887 89 35 84 chr4 8784426 8784604 -193543743 - L1MA5A LINE L1 -3 6294 6126 2413 90 0 0 chr4 8784604 8784903 -193543444 - AluSx SINE Alu -13 299 1 887 89 35 84 chr4 8784903 8784926 -193543421 - L1MA5A LINE L1 -171 6126 6103 2162 156 32 0 chr4 8784926 8785297 -193543050 - L1MA5A LINE L1 -363 5934 5549 1926 124 20 20 chr4 8785299 8785597 -193542750 - AluSq SINE Alu -15 298 1 994 104 8 0 chr4 8785597 8785731 -193542616 - AluSq/x SINE Alu -178 135 1 458 139 0 12 chr4 8785732 8785818 -193542529 - L1MA5A LINE L1 -737 5563 5479 360 315 145 13 chr4 8786121 8786218 -193542129 + L3 LINE CR1 1234 1317 -260 2005 157 0 28 chr4 8786218 8786537 -193541810 + AluJo SINE Alu 1 310 -2 360 315 145 13 chr4 8786537 8786674 -193541673 + L3 LINE CR1 1317 1499 -78 943 226 62 28 chr4 8787080 8787368 -193540979 + MER63B DNA MER1_type 39 336 -100 29 0 0 0 chr4 8787368 8787397 -193540950 + AT_rich Low_complexity Low_complexity 1 29 0 2204 110 4 0 chr4 8787405 8787719 -193540628 + AluSp SINE Alu 1 315 0 251 183 12 0 chr4 8787720 8787802 -193540545 + (TA)n Simple_repeat Simple_repeat 1 83 0 1832 174 3 0 chr4 8787809 8788103 -193540244 - AluJo SINE Alu -17 295 1 454 206 23 30 chr4 8788109 8788240 -193540107 + MER63B DNA MER1_type 304 433 -2 1462 140 34 45 chr4 8788480 8788772 -193539575 + THE1C LTR MaLR 87 375 0 218 259 0 12 chr4 8788772 8788857 -193539490 + (CA)n Simple_repeat Simple_repeat 1 84 0 2052 113 3 3 chr4 8788920 8789240 -193539107 + AluSx SINE Alu 1 320 0 307 307 106 30 chr4 8789257 8789521 -193538826 + L1ME4a LINE L1 5837 6120 -1 1759 120 76 10 chr4 8790847 8791148 -193537199 + LTR24C LTR ERV1 1 321 -314 430 317 158 19 chr4 8791154 8791476 -193536871 + MLT1K LTR MaLR 110 476 -112 437 146 10 87 chr4 8791501 8791604 -193536743 + MER4D LTR ERV1 1 95 -808 207 0 0 0 chr4 8791704 8791727 -193536620 + (A)n Simple_repeat Simple_repeat 1 23 0 1860 154 13 35 chr4 8791805 8792117 -193536230 + AluSx SINE Alu 5 309 -3 1019 175 82 39 chr4 8792290 8792422 -193535925 + AluJo SINE Alu 1 147 -165 2369 113 0 0 chr4 8792422 8792733 -193535614 + AluSx SINE Alu 1 311 -1 1019 175 82 39 chr4 8792733 8792806 -193535541 + AluJo SINE Alu 147 215 -97 284 367 11 0 chr4 8792806 8792896 -193535451 - LTR16C LTR ERVL -287 204 114 224 285 86 99 chr4 8793048 8793420 -193534927 + L2 LINE L2 2858 3224 -48 2494 137 23 44 chr4 8793440 8793913 -193534434 - LTR24 LTR ERV1 0 467 5 266 247 206 16 chr4 8793962 8794156 -193534191 - L2 LINE L2 -235 3037 2807 2436 94 3 0 chr4 8795208 8795516 -193532831 + AluSx SINE Alu 1 309 -3 1326 209 38 59 chr4 8795574 8795947 -193532400 + MER47A DNA MER2_type 1 365 -1 441 230 27 61 chr4 8795952 8796100 -193532247 - L2 LINE L2 -18 3295 3153 2287 77 38 0 chr4 8797736 8798023 -193530324 + AluSc SINE Alu 1 298 -11 1775 176 6 38 chr4 8798594 8798912 -193529435 + AluJo SINE Alu 1 308 -4 1404 208 32 45 chr4 8799159 8799368 -193528979 - MLT1A2 LTR MaLR 0 374 171 2190 111 42 0 chr4 8799368 8799657 -193528690 - AluSc SINE Alu -8 301 1 1404 208 32 45 chr4 8799657 8799826 -193528521 - MLT1A2 LTR MaLR -203 171 1 210 254 0 17 chr4 8800096 8800155 -193528192 + MIR3 SINE MIR 123 180 -28 1575 199 95 34 chr4 8800533 8801057 -193527290 + MER89 LTR ERV1 1 556 -3 1023 121 0 0 chr4 8801323 8801455 -193526892 + AluSp SINE Alu 1 132 -181 2033 111 7 0 chr4 8801457 8801728 -193526619 + AluSp SINE Alu 1 273 -40 2002 95 0 0 chr4 8801828 8802071 -193526276 - AluSq SINE Alu -70 243 1 189 107 0 0 chr4 8802126 8802154 -193526193 + (TCC)n Simple_repeat Simple_repeat 2 29 0 854 296 21 8 chr4 8802170 8802413 -193525934 - MIR SINE MIR -6 256 11 275 337 32 4 chr4 8802501 8802624 -193525723 - MIR SINE MIR -65 143 20 1886 117 29 42 chr4 8802768 8803077 -193525270 - AluSx SINE Alu -7 305 1 531 69 0 0 chr4 8803132 8803204 -193525143 + (TGGA)n Simple_repeat Simple_repeat 1 72 0 217 299 26 26 chr4 8803264 8803341 -193525006 - MIR3 SINE MIR -31 177 101 2108 128 42 31 chr4 8803779 8804139 -193524208 - THE1B LTR MaLR 0 364 1 192 294 86 64 chr4 8805353 8805540 -193522807 - L2 LINE L2 -1262 2052 1862 225 263 0 18 chr4 8805735 8805792 -193522555 + GA-rich Low_complexity Low_complexity 1 56 0 365 314 190 0 chr4 8805878 8806104 -193522243 - L2 LINE L2 0 3313 3045 342 323 56 45 chr4 8806258 8806524 -193521823 - L2 LINE L2 -15 3257 2989 1973 128 6 38 chr4 8806547 8806866 -193521481 + AluSx SINE Alu 1 309 -3 324 308 121 5 chr4 8806869 8807062 -193521285 - MIR SINE MIR -11 251 34 687 177 18 0 chr4 8807238 8807402 -193520945 + (TCCA)n Simple_repeat Simple_repeat 1 167 0 383 176 24 0 chr4 8807467 8807552 -193520795 + (TCCA)n Simple_repeat Simple_repeat 4 90 0 209 270 16 0 chr4 8807587 8807650 -193520697 + (TCCA)n Simple_repeat Simple_repeat 2 65 0 318 325 53 18 chr4 8807682 8807796 -193520551 - L2 LINE L2 -22 3250 3133 180 343 0 14 chr4 8807871 8807941 -193520406 - L2 LINE L2 -3 3269 3201 2392 106 0 3 chr4 8807941 8808252 -193520095 - AluSx SINE Alu -2 310 1 231 183 267 0 chr4 8808304 8808364 -193519983 - MIR SINE MIR -62 146 71 189 147 0 0 chr4 8809178 8809212 -193519135 + (GGGAGA)n Simple_repeat Simple_repeat 3 36 0 180 125 0 0 chr4 8809213 8809245 -193519102 + (TG)n Simple_repeat Simple_repeat 1 32 0 266 274 65 40 chr4 8809318 8809442 -193518905 + L2 LINE L2 3187 3313 0 257 196 0 54 chr4 8809584 8809645 -193518702 + polypyrimidine Low_complexity Low_complexity 1 57 0 2326 109 7 0 chr4 8809645 8809949 -193518398 - AluSx SINE Alu -6 306 1 24 0 0 0 chr4 8810588 8810612 -193517735 + AT_rich Low_complexity Low_complexity 1 24 0 2484 83 3 10 chr4 8810758 8811072 -193517275 - AluSx SINE Alu 0 312 1 1912 134 28 3 chr4 8812009 8812316 -193516031 - AluSx SINE Alu 0 314 1 995 74 0 0 chr4 8812502 8812623 -193515724 + AluSc SINE Alu 175 295 -14 274 315 0 0 chr4 8812975 8813048 -193515299 + MIR3 SINE MIR 104 176 -32 253 200 33 33 chr4 8813536 8813596 -193514751 - MIR SINE MIR -67 141 82 1985 144 3 19 chr4 8815459 8815772 -193512575 - AluJb SINE Alu -4 308 1 368 274 96 7 chr4 8817300 8817435 -193510912 - L1MC/D LINE L1 -2211 5597 5451 2348 99 0 3 chr4 8817451 8817754 -193510593 + AluSx SINE Alu 1 302 -10 216 373 27 18 chr4 8817757 8817886 -193510461 - MIR SINE MIR -61 147 20 239 206 14 14 chr4 8817914 8817987 -193510360 + (TA)n Simple_repeat Simple_repeat 1 73 0 4638 67 18 6 chr4 8818671 8819301 -193509046 + L1PA10 LINE L1 5532 6168 0 286 262 49 31 chr4 8819326 8819528 -193508819 - ALR/Alpha Satellite centromeric 0 205 1 208 340 57 0 chr4 8820895 8821001 -193507346 + MIR SINE MIR 33 144 -64 279 310 90 7 chr4 8821511 8821666 -193506681 - L1ME4a LINE L1 -108 6013 5846 405 331 17 29 chr4 8821730 8821905 -193506442 - MIR SINE MIR -4 258 86 25 51 0 0 chr4 8823009 8823048 -193505299 + AT_rich Low_complexity Low_complexity 1 39 0 319 253 50 104 chr4 8823208 8823390 -193504957 - MIR SINE MIR -74 188 17 436 246 90 0 chr4 8823441 8823563 -193504784 - FLAM_A SINE Alu 0 133 1 544 126 39 19 chr4 8823564 8823667 -193504680 + L1M2 LINE L1 5337 5441 -856 2235 89 0 0 chr4 8823780 8824050 -193504297 - AluY SINE Alu -39 272 3 1737 155 73 9 chr4 8824055 8824396 -193503951 + MER4D LTR ERV1 541 903 0 266 224 92 13 chr4 8824396 8824458 -193503889 + MLT1K LTR MaLR 505 572 -16 190 0 0 0 chr4 8825511 8825532 -193502815 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2164 96 11 0 chr4 8825532 8825812 -193502535 - AluSx SINE Alu -29 283 1 197 260 55 14 chr4 8829104 8829177 -193499170 - MIR3 SINE MIR -23 185 110 422 209 228 0 chr4 8829252 8829410 -193498937 + MER96B DNA MER1_type? 224 417 0 2099 112 7 0 chr4 8829484 8829780 -193498567 - AluSx SINE Alu -14 298 1 1656 175 20 3 chr4 8829790 8830087 -193498260 - AluJo SINE Alu -10 302 1 456 153 0 14 chr4 8830114 8830186 -193498161 - FLAM_A SINE Alu -25 117 47 776 199 0 6 chr4 8830625 8830806 -193497541 + CT-rich Low_complexity Low_complexity 1 180 0 1885 251 82 28 chr4 8830963 8831631 -193496716 - L1MC3 LINE L1 -190 7595 6892 210 219 62 0 chr4 8832451 8832515 -193495832 + MIR SINE MIR 65 132 -76 2194 96 6 13 chr4 8832638 8832951 -193495396 - AluSx SINE Alu -1 311 1 1576 194 20 0 chr4 8833724 8834023 -193494324 - AluJo SINE Alu -5 307 3 655 250 66 5 chr4 8834391 8834587 -193493760 - MLT1B LTR MaLR 0 390 183 517 219 52 24 chr4 8834742 8834920 -193493427 - MLT1B LTR MaLR -196 178 1 843 183 0 0 chr4 8836105 8836473 -193491874 + (CTCA)n Simple_repeat Simple_repeat 1 368 0 234 105 0 0 chr4 8837324 8837362 -193490985 + (A)n Simple_repeat Simple_repeat 1 38 0 604 288 59 5 chr4 8839301 8839476 -193488871 + MIR SINE MIR 13 204 -58 2211 80 3 10 chr4 8839476 8839776 -193488571 - AluSx SINE Alu -14 298 1 604 288 59 5 chr4 8839776 8839819 -193488528 + MIR SINE MIR 204 243 -19 256 111 37 74 chr4 8841988 8842096 -193486251 + (TGGG)n Simple_repeat Simple_repeat 3 106 0 338 350 97 14 chr4 8843551 8843768 -193484579 + MIR SINE MIR 16 250 -12 284 207 0 11 chr4 8843782 8843869 -193484478 + (CA)n Simple_repeat Simple_repeat 2 87 0 892 257 20 76 chr4 8843870 8844224 -193484123 + MER2 DNA MER2_type 5 338 -7 394 222 8 8 chr4 8844239 8844356 -193483991 + (CA)n Simple_repeat Simple_repeat 2 118 0 335 309 11 17 chr4 8844438 8844619 -193483728 + (CA)n Simple_repeat Simple_repeat 1 180 0 214 292 115 15 chr4 8845509 8845639 -193482708 + L2 LINE L2 3169 3311 -2 1939 122 0 0 chr4 8846000 8846278 -193482069 - AluSx SINE Alu -17 295 18 987 189 25 5 chr4 8846423 8846624 -193481723 - MER46A DNA MER2_type 0 236 32 284 356 110 0 chr4 8846669 8846815 -193481532 + MIR3 SINE MIR 30 191 -17 1981 99 67 0 chr4 8847204 8847486 -193480861 - AluSq SINE Alu -12 301 1 253 348 22 23 chr4 8847872 8848076 -193480271 - MIR3 SINE MIR -56 206 6 1642 148 25 18 chr4 8849217 8849531 -193478816 + AluJo SINE Alu 1 316 0 521 227 111 29 chr4 8849578 8849750 -193478597 + MIR SINE MIR 74 259 -3 2094 124 3 0 chr4 8850521 8850827 -193477520 - AluSx SINE Alu -5 307 1 262 134 239 15 chr4 8850975 8851042 -193477305 + L2 LINE L2 3232 3313 0 206 351 99 13 chr4 8853203 8853354 -193474993 - MIR3 SINE MIR -6 202 39 1847 145 41 0 chr4 8854220 8854510 -193473837 - AluSx SINE Alu -9 303 2 366 291 114 50 chr4 8854607 8855088 -193473259 - L2 LINE L2 -813 2501 1990 807 185 0 0 chr4 8855092 8855222 -193473125 + FLAM_C SINE Alu 1 130 -3 180 213 43 43 chr4 8855236 8855283 -193473064 - L2 LINE L2 -346 2967 2921 2239 74 0 17 chr4 8855423 8855721 -193472626 - AluSx SINE Alu -19 293 1 39 60 0 0 chr4 8856097 8856164 -193472183 + GC_rich Low_complexity Low_complexity 1 67 0 28 0 0 0 chr4 8856257 8856285 -193472062 + GC_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr4 8857152 8857180 -193471167 + GC_rich Low_complexity Low_complexity 1 28 0 2262 93 0 0 chr4 8858255 8858556 -193469791 + AluSx SINE Alu 1 301 -11 211 281 85 0 chr4 8858605 8858687 -193469660 + MIR3 SINE MIR 113 201 -7 2184 111 0 0 chr4 8859161 8859459 -193468888 + AluY SINE Alu 1 298 -13 860 195 5 56 chr4 8859542 8859737 -193468610 + FRAM SINE Alu 1 176 0 332 231 0 100 chr4 8860710 8860840 -193467507 + MIR SINE MIR 90 205 -57 189 341 121 0 chr4 8861451 8861542 -193466805 - L2 LINE L2 -13 3259 3158 758 232 211 10 chr4 8862066 8862355 -193465992 - MLT1E LTR MaLR 0 593 247 583 118 0 32 chr4 8862449 8862542 -193465805 - AluSg/x SINE Alu -13 297 208 2142 109 0 0 chr4 8862699 8862992 -193465355 - AluSg SINE Alu -9 301 9 2240 71 14 3 chr4 8863583 8863879 -193464468 + AluY SINE Alu 1 299 -12 1449 182 41 10 chr4 8864059 8864350 -193463997 + AluJo SINE Alu 3 302 -10 438 286 26 32 chr4 8864413 8864567 -193463780 - HAL1 LINE L1 -2 2505 2353 1841 145 7 3 chr4 8864690 8864979 -193463368 + AluSx SINE Alu 1 290 -22 334 208 65 0 chr4 8865013 8865090 -193463257 + MER21B LTR ERV1 16 97 -766 1740 233 32 68 chr4 8865096 8865594 -193462753 + MER21B LTR ERV1 19 498 -365 445 261 200 11 chr4 8865594 8865774 -193462573 - MIR SINE MIR -45 217 4 309 248 132 33 chr4 8866788 8866909 -193461438 + MIR SINE MIR 14 146 -116 2305 89 0 0 chr4 8867054 8867356 -193460991 + AluSg SINE Alu 1 302 -8 886 131 0 0 chr4 8868075 8868197 -193460150 - FLAM_C SINE Alu -11 122 1 745 271 114 0 chr4 8868248 8868458 -193459889 - MIR SINE MIR -18 244 11 1851 114 4 0 chr4 8868733 8869004 -193459343 + AluSx SINE Alu 30 301 -11 330 244 167 0 chr4 8869994 8870084 -193458263 + L2 LINE L2 3168 3272 0 358 313 42 14 chr4 8870221 8870365 -193457982 + L2 LINE L2 3125 3272 0 213 152 0 0 chr4 8870369 8870402 -193457945 - L2 LINE L2 -8 3305 3273 196 268 49 37 chr4 8872278 8872360 -193455987 - MIR3 SINE MIR -111 97 15 532 315 82 0 chr4 8873582 8873766 -193454581 + MER58A DNA MER1_type 23 221 -3 2221 132 3 0 chr4 8874406 8874717 -193453630 - AluSx SINE Alu 0 312 1 362 272 26 9 chr4 8874863 8874977 -193453370 - MIR SINE MIR -119 143 28 347 214 71 20 chr4 8876481 8876579 -193451768 + MIR SINE MIR 100 202 -60 630 157 21 0 chr4 8877055 8877195 -193451152 + (TCCA)n Simple_repeat Simple_repeat 3 145 0 2457 81 3 0 chr4 8877724 8878021 -193450326 - AluSx SINE Alu -14 298 1 372 333 154 5 chr4 8878021 8878216 -193450131 - MIR SINE MIR -16 246 23 336 271 201 7 chr4 8878415 8878559 -193449788 - MIR SINE MIR -71 191 20 562 333 131 47 chr4 8878578 8878771 -193449576 - L1MDb LINE L1 -3371 3035 2860 1856 144 23 26 chr4 8878771 8879077 -193449270 - AluSx SINE Alu -7 305 1 562 333 131 47 chr4 8879077 8879462 -193448885 - L1MDb LINE L1 -3546 2860 2408 192 237 34 34 chr4 8879615 8879674 -193448673 - L2 LINE L2 -1 3312 3254 1902 122 56 4 chr4 8879910 8880180 -193448167 - AluSx SINE Alu -24 288 5 207 0 0 0 chr4 8880196 8880219 -193448128 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 194 213 64 0 chr4 8882921 8882968 -193445379 - MIR3 SINE MIR -47 161 112 1969 145 24 0 chr4 8883100 8883396 -193444951 + AluJo SINE Alu 1 303 -9 308 272 144 30 chr4 8883411 8883613 -193444734 + MER102a DNA MER1_type 98 322 -8 5945 0 0 0 chr4 8883797 8884474 -193443873 - L1HS LINE L1 0 6155 5479 2481 12 0 0 chr4 8884469 8884873 -193443474 + L1P1 LINE L1 5086 5489 -666 * 334 252 37 30 chr4 8885571 8885706 -193442641 - MIR3 SINE MIR -43 165 30 755 234 12 0 chr4 8885824 8885991 -193442356 + MER5A DNA MER1_type 3 171 -18 2475 212 70 107 chr4 8886124 8886760 -193441587 - L1MDb LINE L1 -4233 2173 1515 2330 107 0 13 chr4 8886760 8887069 -193441278 - AluSc SINE Alu -4 305 1 2475 212 70 107 chr4 8887069 8887571 -193440776 - L1MDb LINE L1 -4891 1515 1030 2330 92 3 16 chr4 8887571 8887885 -193440462 - AluSp SINE Alu -3 310 1 2475 212 70 107 chr4 8887885 8888245 -193440102 - L1MDb LINE L1 -5376 1030 658 213 225 62 25 chr4 8888682 8888762 -193439585 + MER5B DNA MER1_type 96 178 0 2238 99 27 0 chr4 8888763 8889057 -193439290 - AluSp SINE Alu -11 302 1 392 308 20 41 chr4 8889137 8889283 -193439064 - MIR3 SINE MIR -63 145 3 303 214 80 45 chr4 8890081 8890193 -193438154 - MIR SINE MIR -112 150 35 190 83 139 0 chr4 8890202 8890238 -193438109 - MIR SINE MIR -165 97 57 217 196 22 0 chr4 8891677 8891723 -193436624 + (TA)n Simple_repeat Simple_repeat 2 48 0 330 248 0 99 chr4 8891723 8891824 -193436523 - L1MC4 LINE L1 -1339 6703 6613 340 158 12 12 chr4 8891839 8891921 -193436426 + (CA)n Simple_repeat Simple_repeat 2 83 0 684 201 66 1 chr4 8892077 8892248 -193436099 - L1MD2 LINE L1 0 8042 6255 628 268 128 22 chr4 8892262 8892305 -193436042 - L2 LINE L2 -640 2674 2637 2191 112 10 3 chr4 8892305 8892601 -193435746 - AluSq SINE Alu -13 300 3 628 268 128 22 chr4 8892601 8892870 -193435477 - L2 LINE L2 -677 2637 2329 2153 111 3 49 chr4 8892897 8893221 -193435126 + AluSx SINE Alu 3 311 -1 253 253 325 6 chr4 8893581 8893747 -193434600 - L2 LINE L2 -1015 2299 2081 259 245 138 13 chr4 8894139 8894298 -193434049 - L2 LINE L2 -1370 1944 1766 2202 87 37 10 chr4 8894522 8894821 -193433526 + AluSp SINE Alu 1 307 -6 181 270 72 63 chr4 8895149 8895260 -193433087 - MIR SINE MIR -3 259 148 220 306 162 51 chr4 8895307 8895523 -193432824 - MIR SINE MIR -1 261 22 791 234 57 0 chr4 8896312 8896504 -193431843 - MER58A DNA MER1_type 0 224 22 335 216 62 0 chr4 8896859 8896956 -193431391 + MER5A DNA MER1_type 7 109 -80 2618 53 0 3 chr4 8897077 8897379 -193430968 - AluY SINE Alu -10 301 1 2228 114 0 19 chr4 8898596 8898913 -193429434 - AluSq SINE Alu -2 311 1 207 0 0 0 chr4 8898913 8898936 -193429411 + (T)n Simple_repeat Simple_repeat 1 23 0 2018 229 118 53 chr4 8899347 8900972 -193427375 - L1ME1 LINE L1 -108 6058 4345 304 159 43 0 chr4 8900988 8901057 -193427290 - L1MA10 LINE L1 -7 6327 6256 2095 84 32 21 chr4 8901111 8901395 -193426952 - AluSc SINE Alu -2 307 21 1128 238 165 36 chr4 8901452 8901594 -193426753 - L1ME1 LINE L1 -2273 3873 3751 2245 121 0 3 chr4 8901594 8901899 -193426448 + AluSx SINE Alu 4 307 -5 1128 238 165 36 chr4 8901899 8902277 -193426070 - L1ME1 LINE L1 -2395 3751 3286 2231 119 0 0 chr4 8902556 8902851 -193425496 + AluSx SINE Alu 1 295 -17 267 330 0 29 chr4 8904415 8904518 -193423829 - MIR SINE MIR -82 180 81 261 278 93 117 chr4 8905032 8905475 -193422872 - L2 LINE L2 -4 3268 2837 198 0 0 0 chr4 8906512 8906534 -193421813 + (T)n Simple_repeat Simple_repeat 1 22 0 183 247 186 31 chr4 8906603 8906700 -193421647 - L2 LINE L2 -20 3252 3141 2387 113 0 0 chr4 8906966 8907277 -193421070 + AluSx SINE Alu 1 311 -1 220 229 29 43 chr4 8908078 8908148 -193420199 + MIR SINE MIR 33 101 -107 2415 86 0 7 chr4 8908258 8908559 -193419788 + AluY SINE Alu 1 299 -12 231 114 0 0 chr4 8908602 8908637 -193419710 + (CAA)n Simple_repeat Simple_repeat 1 35 0 3218 166 54 26 chr4 8908693 8909196 -193419151 + MER39 LTR ERV1 1 489 -218 2262 109 7 0 chr4 8909196 8909499 -193418848 + AluSp SINE Alu 1 305 -8 2015 150 0 3 chr4 8909506 8909806 -193418541 + AluJo SINE Alu 1 299 -13 3218 166 54 26 chr4 8909806 8909982 -193418365 + MER39 LTR ERV1 494 707 0 1501 200 67 9 chr4 8910042 8910372 -193417975 + MLT1B LTR MaLR 1 349 -41 207 188 0 0 chr4 8911086 8911134 -193417213 + (TA)n Simple_repeat Simple_repeat 1 48 0 237 33 0 0 chr4 8911275 8911305 -193417042 + (CA)n Simple_repeat Simple_repeat 1 30 0 198 0 0 0 chr4 8911308 8911330 -193417017 + (TC)n Simple_repeat Simple_repeat 1 22 0 2303 75 7 0 chr4 8912007 8912323 -193416024 + AluSg SINE Alu 1 318 0 1370 187 133 3 chr4 8913323 8913655 -193414692 + MLT1B LTR MaLR 5 379 -11 465 66 0 0 chr4 8913992 8914053 -193414294 + (TCC)n Simple_repeat Simple_repeat 2 62 0 359 244 27 54 chr4 8915082 8915233 -193413114 - MIR SINE MIR -44 164 10 345 313 62 35 chr4 8915681 8915908 -193412439 + L2 LINE L2 3034 3266 -6 3033 126 43 32 chr4 8916028 8916367 -193411980 + MER4B LTR ERV1 1 335 -444 2121 134 3 0 chr4 8916367 8916666 -193411681 - AluSx SINE Alu -12 300 1 3033 126 43 32 chr4 8916666 8916925 -193411422 + MER4B LTR ERV1 335 779 0 3452 125 81 23 chr4 8917873 8917905 -193410442 + LTR9B LTR ERV1 1 30 -614 2296 95 0 52 chr4 8917905 8918231 -193410116 + AluSc SINE Alu 1 309 0 3452 125 81 23 chr4 8918231 8918807 -193409540 + LTR9B LTR ERV1 30 644 0 448 113 0 38 chr4 8919709 8919789 -193408558 + MER4A LTR ERV1 22 98 -566 1697 117 3 80 chr4 8919789 8920149 -193408198 + MER4A LTR ERV1 261 664 0 1206 237 118 9 chr4 8920288 8920626 -193407721 + MSTD LTR MaLR 14 388 -8 185 299 115 60 chr4 8921014 8921231 -193407116 - L2 LINE L2 -24 3248 3020 189 253 131 40 chr4 8922186 8922285 -193406062 + L2 LINE L2 3164 3271 -1 23 0 0 0 chr4 8922429 8922452 -193405895 + AT_rich Low_complexity Low_complexity 1 23 0 1118 137 0 0 chr4 8922469 8922622 -193405725 + AluSq SINE Alu 1 153 -160 2088 144 43 0 chr4 8922815 8923114 -193405233 - AluSx SINE Alu 0 312 1 286 281 162 12 chr4 8923193 8923389 -193404958 - L1ME LINE L1 -477 5644 5422 867 212 100 111 chr4 8924391 8924843 -193403504 + MER31B LTR ERV1 20 466 0 1708 218 48 88 chr4 8924935 8925347 -193403000 + MER34C LTR ERV1 1 381 -204 2170 103 0 31 chr4 8925347 8925666 -193402681 + AluSx SINE Alu 1 309 -3 1708 218 48 88 chr4 8925666 8925863 -193402484 + MER34C LTR ERV1 381 585 0 239 193 18 35 chr4 8927116 8927173 -193401174 + G-rich Low_complexity Low_complexity 1 56 0 245 301 155 29 chr4 8927783 8928022 -193400325 + L2 LINE L2 2913 3181 -91 2327 60 3 17 chr4 8928165 8928467 -193399880 - AluY SINE Alu -13 298 1 2265 82 0 7 chr4 8928801 8929093 -193399254 - AluSc SINE Alu -19 290 1 545 270 103 0 chr4 8929171 8929356 -193398991 - MIR SINE MIR -50 212 9 1041 222 31 38 chr4 8929591 8929983 -193398364 + LTR10B LTR ERV1 214 505 0 1285 194 150 19 chr4 8929983 8930344 -193398003 + MSTC LTR MaLR 21 428 0 494 274 203 0 chr4 8930368 8930634 -193397713 + L1ME3A LINE L1 5841 6160 -10 300 167 0 0 chr4 8930638 8930686 -193397661 + L1MB5 LINE L1 5004 5051 -1095 1693 176 0 7 chr4 8930696 8930980 -193397367 + AluJo SINE Alu 1 282 -30 1436 209 20 22 chr4 8930993 8931351 -193396996 + L1MB5 LINE L1 5315 5671 -509 2038 139 17 0 chr4 8931370 8931672 -193396675 + AluSx SINE Alu 1 307 -5 331 208 0 0 chr4 8931678 8931750 -193396597 + G-rich Low_complexity Low_complexity 3 74 0 747 101 0 0 chr4 8931758 8931857 -193396490 + AluY SINE Alu 10 108 -203 926 66 0 0 chr4 8931959 8932081 -193396266 + AluY SINE Alu 173 294 -17 771 112 0 0 chr4 8932081 8932197 -193396150 + (GGAA)n Simple_repeat Simple_repeat 3 118 0 2023 209 48 6 chr4 8932203 8932686 -193395661 + L1MB5 LINE L1 5672 6174 0 569 329 42 19 chr4 8932700 8932916 -193395431 - MIR SINE MIR -3 259 39 180 317 79 10 chr4 8933510 8933611 -193394736 + MIR SINE MIR 42 149 -59 222 205 26 13 chr4 8935313 8935469 -193392878 + (TG)n Simple_repeat Simple_repeat 2 159 0 420 237 28 11 chr4 8935543 8935720 -193392627 + (TG)n Simple_repeat Simple_repeat 1 180 0 406 203 10 29 chr4 8935773 8936090 -193392257 + (TG)n Simple_repeat Simple_repeat 1 311 0 201 348 22 0 chr4 8936502 8936594 -193391753 + GA-rich Low_complexity Low_complexity 2 95 0 328 287 22 52 chr4 8939485 8939568 -193388779 + L1MC/D LINE L1 5303 5382 -2426 2172 135 3 0 chr4 8939568 8939880 -193388467 + AluSq SINE Alu 1 313 0 328 287 22 52 chr4 8939880 8939932 -193388415 + L1MC/D LINE L1 5382 5434 -2374 1201 203 13 4 chr4 8939935 8940167 -193388180 + AluJo SINE Alu 2 235 -77 1401 88 0 0 chr4 8940271 8940452 -193387895 + AluSg/x SINE Alu 130 310 -2 463 222 153 11 chr4 8940455 8940644 -193387703 + LTR48B LTR ERV1 429 644 0 1993 83 0 76 chr4 8941147 8941472 -193386875 + AluSc SINE Alu 1 302 0 187 319 43 29 chr4 8942092 8942161 -193386186 - L3b LINE CR1 -51 1532 1463 454 255 50 37 chr4 8942169 8942330 -193386017 + MIR SINE MIR 21 183 -79 1760 220 69 21 chr4 8942333 8942756 -193385591 + LTR47B LTR ERVL 1 443 0 1876 143 6 13 chr4 8943031 8943345 -193385002 + AluSx SINE Alu 1 312 0 2107 129 0 3 chr4 8943493 8943796 -193384551 + AluSq SINE Alu 1 302 -11 2521 62 0 0 chr4 8943796 8944101 -193384246 + AluY SINE Alu 1 305 -6 191 344 32 0 chr4 8944619 8944712 -193383635 + L3 LINE CR1 1131 1226 -351 354 288 104 8 chr4 8944790 8944915 -193383432 + MLT1I LTR MaLR 68 204 -205 192 253 172 11 chr4 8945184 8945271 -193383076 + L2 LINE L2 3168 3268 -4 634 257 183 0 chr4 8945385 8945560 -193382787 - MER3 DNA MER1_type 0 209 3 2028 110 13 7 chr4 8945749 8946059 -193382288 + AluSx SINE Alu 1 312 0 340 338 32 32 chr4 8946308 8946524 -193381823 + L2 LINE L2 2841 3056 -257 298 286 80 9 chr4 8948791 8948903 -193379444 - MIR SINE MIR -55 153 34 201 325 36 0 chr4 8949295 8949378 -193378969 + MIR SINE MIR 98 183 -79 2053 241 13 53 chr4 8949790 8950396 -193377951 + L1MB5 LINE L1 5557 6138 -36 2098 109 31 0 chr4 8950400 8950694 -193377653 + AluSx SINE Alu 1 303 -9 1875 148 0 4 chr4 8950717 8951015 -193377332 + AluJb SINE Alu 5 301 0 351 0 0 0 chr4 8951272 8951311 -193377036 + (CA)n Simple_repeat Simple_repeat 2 40 0 423 237 0 0 chr4 8953039 8953132 -193375215 - MIR SINE MIR -133 129 37 250 335 150 21 chr4 8953869 8954102 -193374245 + L2 LINE L2 2968 3230 -42 333 0 0 0 chr4 8954617 8954654 -193373693 + (TG)n Simple_repeat Simple_repeat 2 38 0 339 317 55 23 chr4 8954654 8954770 -193373577 - L2 LINE L2 -285 2987 2876 2088 133 26 0 chr4 8954770 8955072 -193373275 + AluSg SINE Alu 1 310 0 339 317 55 23 chr4 8955072 8955174 -193373173 - L2 LINE L2 -396 2876 2755 1432 233 36 3 chr4 8955350 8955685 -193372662 + MLT2C1 LTR ERVL 1 346 -51 909 174 0 0 chr4 8955715 8955955 -193372392 + (TCCA)n Simple_repeat Simple_repeat 1 240 0 260 286 12 0 chr4 8957325 8957409 -193370938 - L1ME3A LINE L1 -70 6100 6016 189 264 18 73 chr4 8957600 8957710 -193370637 - L2 LINE L2 -220 3052 2949 247 294 39 59 chr4 8958048 8958150 -193370197 - MIR SINE MIR -71 191 92 533 170 18 0 chr4 8958824 8958937 -193369410 + MIR SINE MIR 37 157 -61 696 250 58 10 chr4 8959723 8959931 -193368416 - L1MD2 LINE L1 -4 6355 6138 186 133 0 0 chr4 8959931 8959961 -193368386 + (CGTG)n Simple_repeat Simple_repeat 3 32 0 446 271 7 0 chr4 8962099 8962243 -193366104 + (TG)n Simple_repeat Simple_repeat 2 146 0 255 369 87 0 chr4 8962399 8962594 -193365753 + MIR SINE MIR 20 231 -31 189 0 0 0 chr4 8962920 8962941 -193365406 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 698 204 115 5 chr4 8963120 8963311 -193365036 + MER20 DNA MER1_type 1 212 -7 264 220 110 0 chr4 8963383 8963474 -193364873 + MIR SINE MIR 21 121 -141 2044 122 24 0 chr4 8966528 8966823 -193361524 - AluSx SINE Alu -10 302 1 349 288 176 7 chr4 8968611 8968764 -193359583 + MIR SINE MIR 58 236 -26 459 286 51 60 chr4 8968871 8969105 -193359242 - MIR SINE MIR -17 245 14 702 172 7 7 chr4 8969171 8969322 -193359025 - MER96B DNA MER1_type? -238 179 29 2091 122 7 0 chr4 8969631 8969934 -193358413 + AluSx SINE Alu 1 305 -7 212 167 0 0 chr4 8970002 8970038 -193358309 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 270 304 76 0 chr4 8970474 8970566 -193357781 + MIR SINE MIR 77 175 -87 1575 288 34 58 chr4 8970688 8970884 -193357463 - L1ME1 LINE L1 -67 6099 5900 23 0 0 0 chr4 8970884 8970907 -193357440 + AT_rich Low_complexity Low_complexity 1 23 0 1575 288 34 58 chr4 8970907 8971449 -193356898 - L1ME1 LINE L1 -266 5900 5357 549 86 74 0 chr4 8971449 8971612 -193356735 + (TA)n Simple_repeat Simple_repeat 1 175 0 423 282 60 58 chr4 8971451 8971853 -193356494 + L1MCa LINE L1 1907 6392 -9 * 195 81 14 68 chr4 8971866 8971940 -193356407 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 21 0 0 0 chr4 8971951 8971972 -193356375 + AT_rich Low_complexity Low_complexity 1 21 0 390 129 31 37 chr4 8971976 8972139 -193356208 + (TATAA)n Simple_repeat Simple_repeat 3 164 0 217 64 85 0 chr4 8972141 8972188 -193356159 + (TA)n Simple_repeat Simple_repeat 2 52 0 2105 118 0 0 chr4 8972188 8972476 -193355871 - AluSx SINE Alu -24 288 1 335 200 21 129 chr4 8972476 8972501 -193355846 - L1ME1 LINE L1 -776 5370 5344 703 227 72 139 chr4 8972501 8972999 -193355348 + MER4C LTR ERV1 1 465 0 335 200 21 129 chr4 8972999 8973026 -193355321 - L1ME1 LINE L1 -802 5344 5316 2116 100 0 17 chr4 8973026 8973327 -193355020 - AluSx SINE Alu -16 296 1 335 200 21 129 chr4 8973327 8973413 -193354934 - L1ME1 LINE L1 -830 5316 5246 356 278 48 8 chr4 8973506 8973632 -193354715 - L1MEc LINE L1 -4639 1757 1627 * 631 191 112 7 chr4 8973627 8973779 -193354568 - L1MB8 LINE L1 0 6178 6011 * 1453 284 94 6 chr4 8973777 8974479 -193353868 - L1MEc LINE L1 -4754 1642 879 2033 194 61 27 chr4 8974481 8974925 -193353422 - LTR2B LTR ERV1 0 490 32 358 115 0 16 chr4 8975001 8975062 -193353285 + MADE1 DNA Mariner 21 80 0 252 56 0 28 chr4 8975075 8975111 -193353236 + (TCCC)n Simple_repeat Simple_repeat 2 36 0 1797 178 10 0 chr4 8975111 8975582 -193352765 - AluJo SINE Alu 0 474 1 626 285 95 87 chr4 8975589 8975744 -193352603 - L1MEc LINE L1 -5578 818 666 707 154 8 0 chr4 8975744 8975861 -193352486 - FLAM_C SINE Alu -15 118 1 626 285 95 87 chr4 8975861 8976498 -193351849 - L1MEc LINE L1 -5730 666 20 188 139 0 47 chr4 8977183 8977226 -193351121 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 200 300 71 0 chr4 8977867 8977937 -193350410 - L2 LINE L2 -25 3288 3214 712 236 16 6 chr4 8978459 8978641 -193349706 - Charlie2 DNA MER1_type -38 2824 2641 213 278 48 2 chr4 9029370 9029433 -193298914 - MIR SINE MIR -110 98 37 182 214 0 24 chr4 9029643 9029685 -193298662 - MIR SINE MIR -111 151 111 1606 144 90 7 chr4 9029904 9030182 -193298165 + AluJo SINE Alu 2 302 -10 805 261 105 30 chr4 9030248 9030690 -193297657 + MLT1C LTR MaLR 1 498 -7 192 163 0 0 chr4 9030776 9030819 -193297528 + (TG)n Simple_repeat Simple_repeat 2 44 0 2052 125 0 0 chr4 9030988 9031276 -193297071 + AluSg1 SINE Alu 1 288 -21 1640 250 77 30 chr4 9031358 9032062 -193296285 + L1MD2 LINE L1 5543 6228 -14 509 274 126 0 chr4 9032081 9032296 -193296051 - LTR33A LTR ERVL -22 501 260 1785 104 75 35 chr4 9032298 9032643 -193295704 - THE1B LTR MaLR 0 364 6 782 304 28 30 chr4 9033840 9034202 -193294145 + ERVL LTR ERVL 4873 5233 -531 194 214 0 0 chr4 9034432 9034474 -193293873 - L2 LINE L2 -1 3312 3271 873 225 149 0 chr4 9034759 9035088 -193293259 + MLT1D LTR MaLR 3 380 -125 395 321 35 12 chr4 9035540 9035703 -193292644 - MIR SINE MIR -55 153 38 878 266 61 30 chr4 9036305 9036778 -193291569 - MLT1D LTR MaLR -17 488 1 347 320 23 0 chr4 9036925 9037053 -193291294 + L1ME LINE L1 5522 5652 -469 201 121 0 0 chr4 9038379 9038412 -193289935 + (A)n Simple_repeat Simple_repeat 1 33 0 448 250 0 10 chr4 9038495 9038599 -193289748 - MIR3 SINE MIR -46 162 60 236 307 130 12 chr4 9038888 9039049 -193289298 - MIR SINE MIR -44 218 33 521 198 173 12 chr4 9039154 9039316 -193289031 - MLT1F LTR MaLR -42 500 313 300 277 8 59 chr4 9039320 9039439 -193288908 - MIR SINE MIR -117 145 33 267 291 119 15 chr4 9039575 9039709 -193288638 - MIR3 SINE MIR -51 157 10 194 371 62 21 chr4 9039842 9040036 -193288311 + MIR SINE MIR 8 209 -53 357 316 59 33 chr4 9040811 9040963 -193287384 - L1ME4a LINE L1 -2 6119 5964 2295 100 0 3 chr4 9041752 9042061 -193286286 - AluSc SINE Alu -1 308 1 1931 145 27 0 chr4 9042125 9042422 -193285925 - AluJo SINE Alu -7 305 1 329 172 31 0 chr4 9043292 9043356 -193284991 + MIR SINE MIR 82 147 -61 361 346 31 31 chr4 9043847 9044006 -193284341 + MIR SINE MIR 20 178 -84 243 271 19 37 chr4 9044996 9045103 -193283244 - LTR16C LTR ERVL -41 450 346 206 361 81 68 chr4 9045559 9045880 -193282467 - L2 LINE L2 0 3272 2948 190 297 25 59 chr4 9047499 9047617 -193280730 - L2 LINE L2 -13 3259 3146 591 280 101 49 chr4 9047780 9048205 -193280142 - MLT1L LTR MaLR -27 588 142 239 194 15 60 chr4 9048385 9048452 -193279895 + MIR SINE MIR 46 109 -153 1039 253 210 16 chr4 9048471 9049121 -193279226 - L2 LINE L2 -6 3307 2507 2246 107 3 0 chr4 9050251 9050560 -193277787 - AluSp SINE Alu -3 310 1 695 269 18 6 chr4 9050561 9050732 -193277615 - MIR SINE MIR -66 196 24 426 327 40 10 chr4 9050735 9050934 -193277413 - L1ME LINE L1 -383 5738 5534 2398 87 0 0 chr4 9051150 9051461 -193276886 - AluY SINE Alu 0 311 1 275 321 80 18 chr4 9052502 9052776 -193275571 + L1M4 LINE L1 4112 4402 -1744 1218 25 25 0 chr4 9052789 9052947 -193275400 + MLT2A1 LTR ERVL 1 162 -282 479 335 60 20 chr4 9052949 9053043 -193275304 + L1M4 LINE L1 4966 5055 -1091 2302 103 3 0 chr4 9053043 9053353 -193274994 + AluSx SINE Alu 1 311 -1 479 335 60 20 chr4 9053353 9053509 -193274838 + L1M4 LINE L1 5055 5226 -920 1256 241 117 57 chr4 9053583 9053622 -193274725 - MLT2B1 LTR ERVL -1 519 484 315 0 0 0 chr4 9053622 9053657 -193274690 + (TA)n Simple_repeat Simple_repeat 1 35 0 * 369 43 0 0 chr4 9053656 9053703 -193274644 + (CA)n Simple_repeat Simple_repeat 2 48 0 1256 241 117 57 chr4 9053657 9054152 -193274195 - MLT2B1 LTR ERVL -36 484 2 751 225 113 0 chr4 9054403 9054625 -193273722 - Tigger3(Golem) DNA MER2_type -15 3014 2768 287 353 79 0 chr4 9054741 9054880 -193273467 + MIR SINE MIR 58 207 -55 762 144 0 0 chr4 9054916 9055034 -193273313 - FLAM_A SINE Alu 0 142 25 248 340 131 34 chr4 9055154 9055422 -193272925 + L2 LINE L2 2978 3271 -1 360 272 144 6 chr4 9056328 9056508 -193271839 - MLT1D LTR MaLR 0 505 301 345 265 0 20 chr4 9056572 9056670 -193271677 - MLT1D LTR MaLR -309 196 101 340 246 24 0 chr4 9057408 9057534 -193270813 + CT-rich Low_complexity Low_complexity 4 132 0 2556 42 0 3 chr4 9058048 9058357 -193269990 - AluY SINE Alu -3 308 1 244 99 70 0 chr4 9058424 9058495 -193269852 + (TG)n Simple_repeat Simple_repeat 1 76 0 602 213 20 16 chr4 9058646 9058809 -193269538 - MLT1A1 LTR MaLR 0 396 205 1548 179 4 4 chr4 9059122 9059379 -193268968 - AluJo SINE Alu -55 257 1 269 208 13 52 chr4 9059548 9059603 -193268744 + MIR SINE MIR 70 123 -85 2153 104 20 0 chr4 9059603 9059900 -193268447 - AluSx SINE Alu -9 303 1 269 208 13 52 chr4 9059900 9059921 -193268426 + MIR SINE MIR 123 143 -65 2449 57 0 7 chr4 9060853 9061153 -193267194 - AluY SINE Alu -13 298 1 1960 129 7 0 chr4 9061385 9061696 -193266651 - AluSx SINE Alu 0 313 1 1970 219 65 10 chr4 9063139 9063618 -193264729 + MLT1D LTR MaLR 1 505 0 1341 273 155 0 chr4 9063826 9064310 -193264037 + MER89 LTR ERV1 1 559 0 304 306 124 35 chr4 9064332 9064678 -193263669 - LTR16C LTR ERVL 0 491 115 2070 219 104 2 chr4 9066553 9067101 -193261246 + L1MC2 LINE L1 5741 6344 0 2180 115 3 13 chr4 9067106 9067420 -193260927 + AluSx SINE Alu 1 311 -1 261 293 48 34 chr4 9067732 9067879 -193260468 + MIR3 SINE MIR 29 177 -31 207 279 16 0 chr4 9068105 9068166 -193260181 - L2 LINE L2 -44 3228 3167 2051 134 0 0 chr4 9068558 9068856 -193259491 - AluJb SINE Alu -14 298 1 195 271 34 17 chr4 9069416 9069475 -193258872 - L2 LINE L2 -217 3055 2996 1618 290 44 39 chr4 9071108 9071698 -193256649 + MLT1G1 LTR MaLR 1 593 -2 468 250 96 0 chr4 9072614 9072750 -193255597 - MIR SINE MIR -77 185 37 185 260 82 14 chr4 9074415 9074488 -193253859 + MIR SINE MIR 39 116 -92 2204 118 0 0 chr4 9074779 9075085 -193253262 - AluSg SINE Alu -2 308 3 201 39 0 0 chr4 9075192 9075218 -193253129 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 854 276 60 31 chr4 9075695 9076141 -193252206 + MLT1C LTR MaLR 4 462 -5 1255 251 20 20 chr4 9076150 9076508 -193251839 - MER47A DNA MER2_type -6 360 3 186 333 67 0 chr4 9077002 9077092 -193251255 - MIR SINE MIR -83 125 30 1495 237 84 3 chr4 9077797 9078143 -193250204 - MLT1A2 LTR MaLR 0 374 1 1158 104 50 50 chr4 9078896 9079098 -193249249 + AluJb SINE Alu 111 312 0 1027 244 52 0 chr4 9079153 9079423 -193248924 - Charlie1b DNA MER1_type -239 284 1 432 37 0 0 chr4 9079826 9079880 -193248467 + (TG)n Simple_repeat Simple_repeat 2 55 0 2361 88 0 0 chr4 9080132 9080429 -193247918 + AluSx SINE Alu 1 297 -15 294 328 74 28 chr4 9080431 9080673 -193247674 - MIR SINE MIR -3 259 1 299 310 106 0 chr4 9080928 9081041 -193247306 - MIR SINE MIR -116 146 22 461 266 113 62 chr4 9081874 9082149 -193246198 - L2 LINE L2 -87 3185 2897 191 324 14 28 chr4 9082210 9082281 -193246066 + L2 LINE L2 3223 3292 -21 787 163 0 0 chr4 9083949 9084072 -193244275 + FLAM_C SINE Alu 15 137 -6 241 330 20 20 chr4 9084407 9084520 -193243827 - MIR SINE MIR -85 123 12 6594 90 22 0 chr4 9085341 9086329 -193242018 - L1PA10 LINE L1 0 6168 5175 300 91 0 0 chr4 9086338 9086382 -193241965 + (TTCCC)n Simple_repeat Simple_repeat 1 44 0 3085 128 21 2 chr4 9086382 9086394 -193241953 - L1PA10 LINE L1 -941 5205 5195 2110 129 3 3 chr4 9086394 9086703 -193241644 - AluSq SINE Alu -4 309 1 3085 128 21 2 chr4 9086703 9087262 -193241085 - L1PA10 LINE L1 -951 5195 4623 3186 203 17 16 chr4 9087263 9087898 -193240449 - L1MB3 LINE L1 -2 6181 5546 248 313 24 36 chr4 9087995 9088161 -193240186 + L2 LINE L2 2823 2986 -286 1139 197 171 13 chr4 9088433 9088748 -193239599 - MLT1A1 LTR MaLR 0 365 1 1624 241 75 13 chr4 9089151 9089616 -193238731 - L1MB3 LINE L1 0 6183 5690 247 291 8 103 chr4 9089690 9089807 -193238540 - MIR SINE MIR -34 228 123 2001 189 19 3 chr4 9089904 9090263 -193238084 - MLT1A1 LTR MaLR 0 365 1 529 283 33 69 chr4 9090371 9090647 -193237700 - L1MC4 LINE L1 -369 7673 7408 246 357 179 17 chr4 9090708 9091055 -193237292 - L1MB3 LINE L1 -2109 5699 5297 832 251 164 13 chr4 9092303 9092702 -193235645 + MLT1C LTR MaLR 2 619 -7 439 314 73 5 chr4 9092734 9092925 -193235422 - MIR SINE MIR -12 250 47 315 251 96 36 chr4 9094197 9094364 -193233983 - MER112 DNA MER1_type -11 249 73 652 205 33 60 chr4 9094383 9094598 -193233749 + MLT1D LTR MaLR 1 209 -296 394 269 52 0 chr4 9094713 9094847 -193233500 + MLT1D LTR MaLR 279 419 -86 322 287 36 48 chr4 9094857 9095024 -193233323 + L2 LINE L2 2950 3114 -158 211 286 0 77 chr4 9095743 9095834 -193232513 + MIR3 SINE MIR 110 193 -15 485 256 8 0 chr4 9096122 9096239 -193232108 - MER3 DNA MER1_type -10 199 82 1218 227 30 15 chr4 9096625 9096960 -193231387 - MLT1A1 LTR MaLR -25 340 1 241 200 18 0 chr4 9097106 9097161 -193231186 - MER3 DNA MER1_type -55 154 99 812 258 82 25 chr4 9097292 9097657 -193230690 + MLT1C LTR MaLR 61 446 -21 216 293 65 32 chr4 9098314 9098437 -193229910 - MIR SINE MIR -62 146 20 423 216 18 117 chr4 9098465 9098533 -193229814 + MER20 DNA MER1_type 3 76 -143 1835 157 10 7 chr4 9098533 9098833 -193229514 - AluJo SINE Alu -11 301 1 423 216 18 117 chr4 9098833 9098935 -193229412 + MER20 DNA MER1_type 76 156 -63 274 276 0 23 chr4 9099122 9099209 -193229138 + G-rich Low_complexity Low_complexity 3 87 0 2979 255 60 6 chr4 9100264 9101364 -193226983 + L1MB8 LINE L1 5014 6171 -7 252 363 11 0 chr4 9102215 9102306 -193226041 + MIR SINE MIR 46 137 -125 2489 65 0 0 chr4 9103212 9103518 -193224829 - AluY SINE Alu -5 306 1 2380 94 0 0 chr4 9103528 9103836 -193224511 - AluSc SINE Alu -1 308 1 306 279 23 62 chr4 9103945 9104031 -193224316 + L2 LINE L2 3190 3271 -42 2372 144 22 0 chr4 9104031 9104386 -193223961 - THE1B LTR MaLR -1 363 1 306 279 23 62 chr4 9104386 9104428 -193223919 + L2 LINE L2 3271 3313 0 382 356 12 12 chr4 9104608 9104768 -193223579 + MIR3 SINE MIR 38 197 -11 1493 151 29 210 chr4 9104825 9105301 -193223046 + MLT1B LTR MaLR 1 390 0 210 353 86 0 chr4 9105362 9105478 -193222869 - MIR3 SINE MIR -77 131 6 192 282 186 16 chr4 9106998 9107122 -193221225 + MIR SINE MIR 20 164 -98 218 253 12 49 chr4 9108012 9108174 -193220173 + C-rich Low_complexity Low_complexity 4 159 0 224 294 54 87 chr4 9108451 9108635 -193219712 - MIR3 SINE MIR -24 184 7 342 303 64 0 chr4 9109349 9109458 -193218889 + L2 LINE L2 3156 3271 -1 437 259 95 19 chr4 9109808 9109966 -193218381 - MIR3 SINE MIR -27 181 12 275 267 70 12 chr4 9110045 9110131 -193218216 + MIR SINE MIR 83 173 -89 1864 159 21 0 chr4 9110345 9110635 -193217712 + AluJb SINE Alu 1 296 -16 2379 78 3 0 chr4 9111659 9111967 -193216380 + AluSg SINE Alu 1 309 -1 269 328 94 8 chr4 9112638 9112766 -193215581 - MIR SINE MIR -104 158 20 615 240 67 49 chr4 9114242 9114467 -193213880 - MLT1C LTR MaLR -233 234 6 863 157 167 0 chr4 9115215 9115419 -193212928 + MLT2C1 LTR ERVL 113 350 -47 769 188 22 3 chr4 9115465 9116248 -193212099 + (TCCA)n Simple_repeat Simple_repeat 1 798 0 417 307 17 82 chr4 9116661 9116892 -193211455 + L2 LINE L2 2951 3166 -106 312 316 127 17 chr4 9118226 9118575 -193209772 + MLT1K LTR MaLR 189 566 -22 2260 101 0 0 chr4 9120222 9120519 -193207828 - AluSx SINE Alu -15 297 1 246 254 0 39 chr4 9120980 9121077 -193207270 + GA-rich Low_complexity Low_complexity 1 143 0 253 316 22 15 chr4 9121152 9121288 -193207059 - MER105 DNA DNA -67 137 1 2303 65 7 3 chr4 9122098 9122391 -193205956 + AluY SINE Alu 1 294 -17 1863 114 0 4 chr4 9122400 9122663 -193205684 + AluY SINE Alu 42 303 -8 302 331 44 37 chr4 9122667 9122803 -193205544 + L1ME1 LINE L1 6028 6164 -2 220 372 58 17 chr4 9122831 9123003 -193205344 - MIR SINE MIR -38 224 46 307 326 54 0 chr4 9123247 9123376 -193204971 + MIR3 SINE MIR 13 148 -60 1831 103 0 8 chr4 9123380 9123632 -193204715 + AluSc SINE Alu 1 250 -59 291 214 0 0 chr4 9123632 9123688 -193204659 - MLT1C LTR MaLR -411 56 1 210 214 18 18 chr4 9124589 9124645 -193203702 + (TTCA)n Simple_repeat Simple_repeat 2 57 0 460 333 64 23 chr4 9125476 9125695 -193202652 - MIR SINE MIR -29 233 6 1040 264 65 9 chr4 9126799 9127136 -193201211 - MER70A LTR ERVL -96 376 21 247 288 38 0 chr4 9127490 9127570 -193200777 - MLT1L LTR MaLR -532 83 1 533 301 121 39 chr4 9128318 9128473 -193199874 + L1ME4a LINE L1 4019 4160 -1986 2896 88 5 0 chr4 9128473 9128846 -193199501 - THE1C LTR MaLR 0 375 1 533 301 121 39 chr4 9128846 9129045 -193199302 + L1ME4a LINE L1 4160 4402 -1744 363 354 80 64 chr4 9129375 9129913 -193198434 + L1ME4a LINE L1 4954 5506 -747 280 313 104 9 chr4 9129966 9130081 -193198266 - MIR SINE MIR -13 249 124 346 323 60 8 chr4 9131275 9131408 -193196939 + L1ME4a LINE L1 5978 6117 -4 3529 123 13 11 chr4 9131709 9132325 -193196022 + MER4D LTR ERV1 1 617 -255 4391 68 13 0 chr4 9132325 9132872 -193195475 + MER41A LTR ERV1 1 554 0 3875 112 16 26 chr4 9133044 9133668 -193194679 + MER41A-int LTR ERV1 1 618 -5328 * 11299 123 43 27 chr4 9133654 9134330 -193194017 + MER41A-int LTR ERV1 1079 1743 -4203 2294 98 0 3 chr4 9134330 9134637 -193193710 - AluY SINE Alu -5 306 1 11299 123 43 27 chr4 9134637 9135007 -193193340 + MER41A-int LTR ERV1 1743 2106 -3840 2395 73 0 10 chr4 9135007 9135321 -193193026 + AluY SINE Alu 1 311 0 11299 123 43 27 chr4 9135321 9137445 -193190902 + MER41A-int LTR ERV1 2106 5944 -2 4286 70 20 0 chr4 9137445 9137988 -193190359 + MER41A LTR ERV1 1 554 0 1273 163 53 0 chr4 9137988 9138234 -193190113 + MER4D LTR ERV1 645 903 0 250 376 58 0 chr4 9139372 9139561 -193188786 + MIR SINE MIR 49 248 -14 2166 107 0 10 chr4 9141063 9141361 -193186986 + AluSp SINE Alu 1 295 -18 1735 155 0 68 chr4 9141553 9141875 -193186472 + AluJb SINE Alu 1 300 -12 741 157 8 6 chr4 9142596 9142845 -193185502 - AluJb SINE Alu -14 298 1 199 274 164 0 chr4 9143258 9143331 -193185016 + MIR SINE MIR 53 137 -125 325 282 92 14 chr4 9143982 9144124 -193184223 - L2 LINE L2 -271 3001 2849 418 254 40 0 chr4 9145677 9145803 -193182544 - MER58B DNA MER1_type -7 334 204 1886 135 10 17 chr4 9145974 9146263 -193182084 - AluJo SINE Alu -23 289 3 292 279 54 8 chr4 9148287 9148416 -193179931 + MER106A DNA MER1_type 102 236 0 244 288 12 0 chr4 9148419 9148499 -193179848 + L2 LINE L2 2987 3067 -205 2634 188 9 11 chr4 9149523 9150066 -193178281 - L1PA16 LINE L1 -156 6010 5469 24 0 0 0 chr4 9150205 9150229 -193178118 + AT_rich Low_complexity Low_complexity 1 24 0 245 286 114 9 chr4 9152113 9152218 -193176129 + MIR SINE MIR 28 143 -119 943 173 0 0 chr4 9153656 9153806 -193174541 - AluJb SINE Alu -15 297 148 2093 132 0 0 chr4 9154053 9154356 -193173991 - AluY SINE Alu -8 303 1 243 307 97 29 chr4 9155108 9155294 -193173053 - MIR SINE MIR -30 232 33 259 288 159 18 chr4 9155551 9155720 -193172627 - MIR SINE MIR -38 224 34 2605 30 3 0 chr4 9156579 9156884 -193171463 + AluY SINE Alu 2 307 -4 350 235 65 53 chr4 9157194 9157364 -193170983 + MLT1D LTR MaLR 42 213 -292 193 273 61 0 chr4 9158953 9159019 -193169328 - MIR3 SINE MIR -54 154 85 360 179 0 95 chr4 9159084 9159263 -193169084 + (CACCT)n Simple_repeat Simple_repeat 2 163 0 2424 70 0 0 chr4 9160152 9160454 -193167893 + AluY SINE Alu 1 302 -9 668 313 25 0 chr4 9161027 9161228 -193167119 - MIR SINE MIR -19 243 38 228 291 64 36 chr4 9162156 9162266 -193166081 + L2 LINE L2 3173 3285 -28 2119 116 7 0 chr4 9163690 9163992 -193164355 + AluSx SINE Alu 1 304 -8 1275 162 4 26 chr4 9163993 9164222 -193164125 + AluJo SINE Alu 71 294 -18 188 352 56 40 chr4 9164612 9164737 -193163610 - L3 LINE CR1 -572 1005 879 651 26 0 0 chr4 9164866 9164943 -193163404 + (TATATG)n Simple_repeat Simple_repeat 1 77 0 847 265 56 8 chr4 9165462 9165696 -193162651 - MIR SINE MIR -3 259 15 1342 175 0 43 chr4 9165905 9166139 -193162208 - MER58A DNA MER1_type 0 224 1 468 51 0 0 chr4 9166630 9166689 -193161658 + (TG)n Simple_repeat Simple_repeat 2 60 0 1959 112 0 11 chr4 9166776 9167090 -193161257 - AluSx SINE Alu 0 311 1 763 107 80 0 chr4 9167167 9167279 -193161068 - 5S rRNA rRNA 0 121 1 435 328 75 0 chr4 9167751 9167937 -193160410 + MIR SINE MIR 50 249 -13 461 290 193 0 chr4 9168587 9168763 -193159584 + L2 LINE L2 3021 3230 -42 349 304 48 0 chr4 9168776 9168901 -193159446 + MIR SINE MIR 44 174 -88 549 272 0 0 chr4 9169886 9170428 -193157919 + (TG)n Simple_repeat Simple_repeat 1 542 0 602 259 23 29 chr4 9170466 9170640 -193157707 - MIR SINE MIR -29 233 61 495 294 43 27 chr4 9170721 9170905 -193157442 - MER5A DNA MER1_type 0 189 3 247 185 0 56 chr4 9170931 9170985 -193157362 + L2 LINE L2 3213 3263 -9 302 261 210 0 chr4 9171850 9171969 -193156378 + MIR3 SINE MIR 3 146 -62 997 260 7 11 chr4 9172913 9173190 -193155157 - L1MC3 LINE L1 0 7785 7510 1154 81 7 0 chr4 9173213 9173362 -193154985 - AluSg SINE Alu -160 150 1 1837 193 60 53 chr4 9173364 9173706 -193154641 - L1MC3 LINE L1 -1097 6688 6341 1978 122 7 0 chr4 9173706 9173992 -193154355 - AluJb SINE Alu -24 288 1 1837 193 60 53 chr4 9173992 9174136 -193154211 - L1MC3 LINE L1 -1444 6341 6199 233 116 23 0 chr4 9174143 9174186 -193154161 - L1MC3 LINE L1 -1543 6242 6199 723 171 46 129 chr4 9174192 9174321 -193154026 - L1MC3 LINE L1 -1542 6243 6146 2111 115 0 0 chr4 9174321 9174616 -193153731 + AluSq SINE Alu 5 299 -14 723 171 46 129 chr4 9174616 9174749 -193153598 - L1MC3 LINE L1 -1639 6146 6003 499 319 133 11 chr4 9174766 9175133 -193153214 - L1MC3 LINE L1 -1810 5998 5587 978 276 54 13 chr4 9175512 9175903 -193152444 + L1MC3 LINE L1 7379 7785 0 2325 97 0 0 chr4 9175925 9176225 -193152122 + AluSx SINE Alu 1 300 -12 393 236 52 52 chr4 9176241 9176415 -193151932 + L2 LINE L2 2938 3111 -161 1783 204 75 81 chr4 9176428 9176804 -193151543 - L1MC3 LINE L1 -380 7405 7033 2208 117 3 0 chr4 9176804 9177113 -193151234 - AluSg SINE Alu 0 310 1 1783 204 75 81 chr4 9177113 9177352 -193150995 - L1MC3 LINE L1 -752 7033 6794 2044 119 3 7 chr4 9179912 9180205 -193148142 - AluJo SINE Alu -20 292 1 202 290 130 40 chr4 9180934 9181034 -193147313 - MER5B DNA MER1_type -5 173 65 180 278 19 0 chr4 9181110 9181164 -193147183 - MIR SINE MIR -65 143 89 2029 99 3 20 chr4 9181222 9181542 -193146805 - AluSx SINE Alu 0 315 1 223 182 36 36 chr4 9181595 9181650 -193146697 + MIR SINE MIR 85 139 -69 2095 110 0 0 chr4 9181694 9182038 -193146309 - AluSg SINE Alu 0 344 1 376 272 93 12 chr4 9182254 9182416 -193145931 + MER58A DNA MER1_type 42 216 -8 282 305 70 25 chr4 9182698 9182898 -193145449 + L2 LINE L2 2957 3165 -107 266 274 17 60 chr4 9184183 9184300 -193144047 + MIR SINE MIR 13 124 -138 386 286 110 0 chr4 9184478 9184632 -193143715 - MIR3 SINE MIR -22 186 16 236 258 134 0 chr4 9185049 9185146 -193143201 - MIR SINE MIR -63 145 36 870 268 67 42 chr4 9186236 9186639 -193141708 + MLT1C LTR MaLR 53 465 -2 802 191 64 25 chr4 9187210 9187414 -193140933 + MER20 DNA MER1_type 6 217 -2 300 301 78 2 chr4 9187425 9187561 -193140786 + MIR SINE MIR 31 143 -65 261 250 0 0 chr4 9188129 9188205 -193140142 + (TG)n Simple_repeat Simple_repeat 1 76 0 255 326 101 0 chr4 9189569 9189707 -193138640 + MIR SINE MIR 33 184 -78 605 258 154 41 chr4 9189947 9190292 -193138055 - MLT1C LTR MaLR -66 401 18 242 323 202 0 chr4 9190462 9190586 -193137761 - MIR SINE MIR -6 256 108 183 311 33 0 chr4 9190991 9191052 -193137295 - L2 LINE L2 -2 3270 3208 240 86 0 0 chr4 9192513 9192548 -193135799 + (TG)n Simple_repeat Simple_repeat 1 35 0 225 275 100 0 chr4 9192560 9192640 -193135707 + MIR SINE MIR 90 177 -85 203 193 0 57 chr4 9194625 9194713 -193133634 + CT-rich Low_complexity Low_complexity 2 84 0 219 295 67 0 chr4 9194976 9195081 -193133266 - MIR SINE MIR -62 146 35 188 308 0 0 chr4 9195303 9195355 -193132992 + L2 LINE L2 3221 3272 0 2411 256 152 31 chr4 9195968 9196069 -193132278 - L1MC4 LINE L1 -13 8029 7942 354 80 0 0 chr4 9196069 9196119 -193132228 + (TG)n Simple_repeat Simple_repeat 1 50 0 2411 256 152 31 chr4 9196119 9197130 -193131217 - L1MC4 LINE L1 -100 7942 6783 1789 213 58 11 chr4 9197130 9197563 -193130784 - LTR32 LTR ERVL 0 471 19 2127 96 51 0 chr4 9197609 9197901 -193130446 - AluSx SINE Alu -5 307 1 193 333 31 21 chr4 9197907 9198003 -193130344 - L2 LINE L2 -15 3257 3161 903 242 62 10 chr4 9198381 9198802 -193129545 + MLT1D LTR MaLR 14 486 -19 189 235 29 137 chr4 9199150 9199252 -193129095 + MER5A DNA MER1_type 1 91 -98 2080 74 88 0 chr4 9199738 9200021 -193128326 + AluSx SINE Alu 1 308 -4 291 153 27 54 chr4 9200246 9200357 -193127990 + CT-rich Low_complexity Low_complexity 1 108 0 311 219 31 25 chr4 9200413 9200573 -193127774 + CT-rich Low_complexity Low_complexity 1 161 0 499 283 11 33 chr4 9200603 9200783 -193127564 + C-rich Low_complexity Low_complexity 4 179 0 312 370 25 6 chr4 9202559 9202721 -193125626 + MIR SINE MIR 86 250 -12 318 304 45 9 chr4 9202773 9202835 -193125512 + MIR SINE MIR 48 117 -145 1467 207 51 10 chr4 9202835 9203130 -193125217 + AluJo SINE Alu 1 307 -5 318 304 45 9 chr4 9203130 9203179 -193125168 + MIR SINE MIR 117 163 -99 2051 125 0 13 chr4 9203889 9204192 -193124155 - AluSx SINE Alu -1 311 13 328 336 27 0 chr4 9205036 9205146 -193123201 - MIR SINE MIR -111 151 39 226 298 34 73 chr4 9205881 9206059 -193122288 - MIR3 SINE MIR -30 178 8 262 354 34 0 chr4 9206496 9206628 -193121719 + MIR SINE MIR 45 182 -63 497 305 28 7 chr4 9207023 9207164 -193121183 - MIR3 SINE MIR -46 162 19 243 88 0 0 chr4 9207335 9207369 -193120978 + (TG)n Simple_repeat Simple_repeat 2 35 0 542 105 13 0 chr4 9207675 9207751 -193120596 + MADE1 DNA Mariner 1 77 -3 184 231 0 19 chr4 9208321 9208373 -193119974 + MIR SINE MIR 104 154 -108 1340 250 120 19 chr4 9208992 9209416 -193118931 - MLT1C LTR MaLR 0 467 1 1708 218 114 2 chr4 9210671 9211195 -193117152 - L1MD3 LINE L1 0 8040 7472 2215 107 3 3 chr4 9211582 9211891 -193116456 - AluSx SINE Alu -1 311 3 186 43 0 0 chr4 9211896 9211919 -193116428 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2081 116 0 7 chr4 9212854 9213156 -193115191 - AluSx SINE Alu -11 301 2 398 335 0 28 chr4 9213159 9213341 -193115006 + (CATA)n Simple_repeat Simple_repeat 3 179 0 * 425 328 0 24 chr4 9213246 9213451 -193114896 + (CA)n Simple_repeat Simple_repeat 1 200 0 193 302 105 12 chr4 9213813 9213899 -193114448 - MIR SINE MIR -56 206 113 460 207 36 9 chr4 9218057 9218168 -193110179 - MER81 DNA DNA 0 114 1 196 202 17 34 chr4 9218621 9218740 -193109607 + (TGAG)n Simple_repeat Simple_repeat 4 120 0 2047 260 13 74 chr4 9219343 9219526 -193108821 - L1 LINE L1 -2705 3441 3248 831 135 8 8 chr4 9219526 9219659 -193108688 - FLAM_C SINE Alu 0 133 1 2047 260 13 74 chr4 9219659 9220007 -193108340 - L1 LINE L1 -2898 3248 2982 2016 110 10 7 chr4 9220007 9220298 -193108049 - AluJb SINE Alu -12 300 9 2047 260 13 74 chr4 9220298 9220643 -193107704 - L1 LINE L1 -3164 2982 2617 201 180 20 20 chr4 9221396 9221446 -193106901 + G-rich Low_complexity Low_complexity 6 55 0 655 253 39 28 chr4 9222075 9222257 -193106090 + MER5A DNA MER1_type 6 189 0 861 133 27 12 chr4 9222821 9223084 -193105263 + (TCCA)n Simple_repeat Simple_repeat 1 267 0 903 154 26 5 chr4 9223108 9223687 -193104660 + (TCCA)n Simple_repeat Simple_repeat 1 591 0 903 169 0 0 chr4 9223703 9223875 -193104472 + (TCCA)n Simple_repeat Simple_repeat 4 175 0 452 259 24 0 chr4 9225005 9225136 -193103211 - MIR3 SINE MIR -52 156 45 236 263 0 0 chr4 9227164 9227221 -193101126 - L2 LINE L2 -217 3055 2999 375 244 0 0 chr4 9228473 9228604 -193099743 + (CA)n Simple_repeat Simple_repeat 2 132 0 432 267 0 0 chr4 9228655 9228835 -193099512 + (CA)n Simple_repeat Simple_repeat 1 180 0 218 243 37 37 chr4 9228888 9228995 -193099352 + L2 LINE L2 3004 3110 -162 377 275 9 18 chr4 9230577 9230686 -193097661 - MIR SINE MIR -74 188 81 739 237 16 5 chr4 9231200 9231390 -193096957 - L1MB5 LINE L1 -2 6172 5981 256 307 58 22 chr4 9231977 9232114 -193096233 + MIR3 SINE MIR 4 145 -63 4663 87 12 23 chr4 9232241 9232747 -193095600 + MER41B LTR ERV1 1 500 -135 2083 109 3 7 chr4 9232747 9233049 -193095298 - AluSx SINE Alu -11 301 1 4663 87 12 23 chr4 9233049 9233184 -193095163 + MER41B LTR ERV1 500 635 0 198 323 141 0 chr4 9233184 9233283 -193095064 + MIR SINE MIR 97 209 -53 199 139 0 0 chr4 9233749 9233785 -193094562 - MIR SINE MIR -92 116 81 249 244 24 61 chr4 9233882 9233964 -193094383 - MIR3 SINE MIR -40 168 90 376 370 0 0 chr4 9234153 9234280 -193094067 + L3 LINE CR1 1337 1463 -114 307 283 49 136 chr4 9234535 9234719 -193093628 + MIR SINE MIR 51 218 -44 1143 286 54 52 chr4 9234825 9235422 -193092925 + MLT1E1 LTR MaLR 57 654 0 501 230 37 47 chr4 9236018 9236209 -193092138 + MER51C LTR ERV1 452 640 0 275 321 80 18 chr4 9237394 9237668 -193090679 + L1M4 LINE L1 4112 4402 -1744 1218 25 25 0 chr4 9237681 9237839 -193090508 + MLT2A1 LTR ERVL 1 162 -282 409 322 48 40 chr4 9237841 9237935 -193090412 + L1M4 LINE L1 4966 5058 -1088 2363 85 3 0 chr4 9237935 9238242 -193090105 + AluSx SINE Alu 1 308 -4 409 322 48 40 chr4 9238242 9238374 -193089973 + L1M4 LINE L1 5058 5194 -952 1256 241 117 57 chr4 9238453 9238492 -193089855 - MLT2B1 LTR ERVL -1 519 484 369 0 0 0 chr4 9238492 9238533 -193089814 + (TA)n Simple_repeat Simple_repeat 1 41 0 * 462 18 0 0 chr4 9238532 9238587 -193089760 + (CA)n Simple_repeat Simple_repeat 2 56 0 1256 241 117 57 chr4 9238533 9239036 -193089311 - MLT2B1 LTR ERVL -36 484 2 751 225 113 0 chr4 9239287 9239509 -193088838 - Tigger3(Golem) DNA MER2_type -15 3014 2768 287 353 79 0 chr4 9239625 9239764 -193088583 + MIR SINE MIR 58 207 -55 757 145 0 0 chr4 9239800 9239917 -193088430 - FLAM_A SINE Alu -1 141 25 248 340 131 34 chr4 9240037 9240305 -193088042 + L2 LINE L2 2978 3271 -1 360 272 144 6 chr4 9241211 9241391 -193086956 - MLT1D LTR MaLR 0 505 301 345 265 0 20 chr4 9241455 9241553 -193086794 - MLT1D LTR MaLR -309 196 101 340 246 24 0 chr4 9242291 9242417 -193085930 + CT-rich Low_complexity Low_complexity 4 132 0 1232 118 5 0 chr4 9242931 9243117 -193085230 - AluY SINE Alu -2 309 123 440 202 81 0 chr4 9243370 9243469 -193084878 + MIR SINE MIR 76 182 -80 2113 142 34 31 chr4 9243478 9243923 -193084424 + LTR32 LTR ERVL 13 458 -13 518 283 19 13 chr4 9244315 9244474 -193083873 - MER63A DNA MER1_type -41 169 10 247 237 7 66 chr4 9244587 9244667 -193083680 + MIR3 SINE MIR 93 170 -38 281 297 21 25 chr4 9244774 9244969 -193083378 + L1ME LINE L1 5508 5702 -462 593 314 49 5 chr4 9245531 9245764 -193082583 - MIR SINE MIR -18 244 4 255 157 20 0 chr4 9245865 9245916 -193082431 + L2 LINE L2 3262 3313 0 694 277 163 3 chr4 9246297 9246597 -193081750 + LTR16C LTR ERVL 139 486 -5 302 279 0 0 chr4 9246749 9246817 -193081530 - L2 LINE L2 -208 3064 2997 264 238 69 10 chr4 9247349 9247450 -193080897 - L1ME4a LINE L1 -48 6073 5967 438 238 100 38 chr4 9247481 9247641 -193080706 - L1M4 LINE L1 -1511 4635 4466 446 319 102 12 chr4 9247654 9247913 -193080434 - L1ME4a LINE L1 -202 5919 5632 2532 53 0 0 chr4 9248043 9248345 -193080002 + AluY SINE Alu 1 302 -9 520 255 28 0 chr4 9248584 9248725 -193079622 - L1ME3A LINE L1 -5 6165 6021 1086 202 43 0 chr4 9248740 9248948 -193079399 + MER20 DNA MER1_type 1 217 -2 277 171 158 0 chr4 9249933 9250009 -193078338 - MER96 DNA MER1_type? -86 89 2 356 358 28 17 chr4 9250214 9250390 -193077957 + MIR SINE MIR 6 183 -79 312 287 7 44 chr4 9252227 9252363 -193075984 + MLT1K LTR MaLR 454 584 -4 524 249 57 36 chr4 9252521 9252714 -193075633 + ORSL DNA AcHobo 13 209 -66 1761 196 28 11 chr4 9252800 9253157 -193075190 + MLT1A1 LTR MaLR 3 365 0 300 289 221 29 chr4 9254173 9254381 -193073966 - MIR SINE MIR 0 262 15 286 216 70 12 chr4 9254788 9254900 -193073447 - LTR45 LTR ERV1 -13 609 390 445 287 33 0 chr4 9255025 9255147 -193073200 - MER72 LTR ERV1 -264 458 333 219 270 153 9 chr4 9255300 9255411 -193072936 - MIR SINE MIR -45 217 91 657 229 120 36 chr4 9255912 9256104 -193072243 + MER63A DNA MER1_type 3 210 0 820 241 3 71 chr4 9256623 9256905 -193071442 + HAL1 LINE L1 1465 1727 -780 505 251 87 0 chr4 9256907 9256992 -193071355 + HAL1 LINE L1 1926 2002 -505 231 36 0 0 chr4 9256992 9257020 -193071327 + (CA)n Simple_repeat Simple_repeat 1 28 0 505 251 87 0 chr4 9257020 9257129 -193071218 + HAL1 LINE L1 2002 2137 -370 2239 183 66 2 chr4 9257138 9257649 -193070698 - MER54A LTR ERVL 0 901 147 428 256 13 13 chr4 9257719 9257875 -193070472 + HAL1 LINE L1 2193 2348 -159 1131 139 24 18 chr4 9257879 9258212 -193070135 + Tigger1 DNA MER2_type 26 2413 -5 354 311 8 68 chr4 9258244 9258376 -193069971 + HAL1 LINE L1 2368 2491 -16 2632 29 3 0 chr4 9258376 9258684 -193069663 - AluY SINE Alu -2 309 1 4428 148 87 7 chr4 9258711 9259675 -193068672 - L1MA5 LINE L1 -5 6295 5263 5165 165 45 29 chr4 9259730 9260804 -193067543 - L1 LINE L1 -816 5330 4232 2180 105 3 0 chr4 9260804 9261100 -193067247 - AluSq SINE Alu -16 297 1 5165 165 45 29 chr4 9261100 9261251 -193067096 - L1 LINE L1 -1914 4232 4085 2053 106 10 22 chr4 9261968 9262279 -193066068 - AluSx SINE Alu 0 312 6 247 163 0 0 chr4 9262460 9262503 -193065844 - Alu SINE Alu -259 43 1 602 156 93 70 chr4 9262518 9262745 -193065602 - LTR18B LTR ERVL -146 468 149 1222 121 0 0 chr4 9262760 9263355 -193064992 + ALR/Alpha Satellite centromeric 1 595 -51 284 265 84 12 chr4 9263363 9263446 -193064901 + L2 LINE L2 3183 3271 -42 284 301 32 0 chr4 9264793 9264886 -193063461 - MIR SINE MIR -72 190 95 219 282 56 14 chr4 9265682 9265753 -193062594 - MIR3 SINE MIR -54 154 81 540 323 42 21 chr4 9266111 9266399 -193061948 + L1ME LINE L1 5300 5593 -577 275 304 49 29 chr4 9266917 9267019 -193061328 + MIR3 SINE MIR 78 181 -27 247 265 0 0 chr4 9267179 9267228 -193061119 + L2 LINE L2 3221 3269 -3 24 0 0 0 chr4 9267680 9267704 -193060643 + GC_rich Low_complexity Low_complexity 1 24 0 318 67 0 0 chr4 9268073 9268118 -193060229 + (TTAGGG)n Simple_repeat Simple_repeat 6 50 0 267 248 0 0 chr4 9268648 9268736 -193059611 + MIR SINE MIR 63 146 -62 286 270 46 0 chr4 9269085 9269214 -193059133 + MIR SINE MIR 13 148 -60 2025 102 0 11 chr4 9269218 9269554 -193058793 + AluSx SINE Alu 1 333 0 1525 162 30 4 chr4 9269611 9269876 -193058471 - MLT1B LTR MaLR -2 388 117 637 203 11 0 chr4 9271188 9271365 -193056982 + (TGGG)n Simple_repeat Simple_repeat 1 179 0 533 354 16 0 chr4 9271465 9271657 -193056690 - MIR SINE MIR -60 202 8 2087 133 0 3 chr4 9272331 9272640 -193055707 + AluSx SINE Alu 1 308 -4 1984 116 0 17 chr4 9273815 9274108 -193054239 + AluSx SINE Alu 1 288 -24 446 355 90 30 chr4 9274110 9274414 -193053933 - HAL1 LINE L1 -914 1593 1266 1827 151 20 0 chr4 9274414 9274712 -193053635 - AluJo SINE Alu -8 304 1 446 355 90 30 chr4 9274712 9274739 -193053608 - HAL1 LINE L1 -1241 1266 1242 880 161 0 0 chr4 9275797 9275927 -193052420 + FLAM_C SINE Alu 2 131 -2 2086 101 0 14 chr4 9275943 9276264 -193052083 + AluSx SINE Alu 1 317 0 3564 125 21 21 chr4 9276737 9277264 -193051083 - MER1A DNA MER1_type 0 527 1 860 286 92 45 chr4 9282007 9282256 -193046091 + MLT1C LTR MaLR 2 283 -184 8387 52 12 4 chr4 9282256 9283255 -193045092 - LTR13 LTR ERVK 0 1007 1 860 286 92 45 chr4 9283255 9283449 -193044898 + MLT1C LTR MaLR 283 466 -1 246 263 95 0 chr4 9283725 9283820 -193044527 + MER20 DNA MER1_type 26 129 -90 207 100 0 0 chr4 9284114 9284144 -193044203 + (A)n Simple_repeat Simple_repeat 1 30 0 678 211 157 12 chr4 9284499 9284665 -193043682 + MER21B LTR ERV1 1 190 -673 * 920 206 76 76 chr4 9284660 9284936 -193043411 + MER21B LTR ERV1 581 856 -7 248 250 0 0 chr4 9285005 9285077 -193043270 + L1M4 LINE L1 5106 5177 -969 511 239 71 13 chr4 9285890 9286045 -193042302 - MER20 DNA MER1_type -53 166 3 279 354 42 14 chr4 9287604 9287748 -193040599 + L2 LINE L2 3125 3272 0 870 166 0 0 chr4 9288242 9288417 -193039930 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 29 0 0 0 chr4 9291248 9291277 -193037070 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr4 9291449 9291493 -193036854 + AT_rich Low_complexity Low_complexity 1 44 0 401 298 73 11 chr4 9293278 9293456 -193034891 - MIR SINE MIR -54 208 20 1901 231 70 30 chr4 9293462 9294136 -193034211 + L1M4 LINE L1 3066 3766 -2380 1221 105 0 42 chr4 9294136 9294326 -193034021 + AluSg/x SINE Alu 122 303 -9 1560 168 14 119 chr4 9294327 9294433 -193033914 + L1M4 LINE L1 5279 5395 -783 1985 119 33 0 chr4 9294433 9294736 -193033611 + AluSq SINE Alu 1 313 0 1560 168 14 119 chr4 9294736 9294864 -193033483 + L1M4 LINE L1 5395 5535 -643 748 184 0 16 chr4 9294864 9294989 -193033358 + FLAM_A SINE Alu 1 123 -10 1560 168 14 119 chr4 9294989 9295000 -193033347 + L1M4 LINE L1 5535 5546 -632 2192 107 7 7 chr4 9295000 9295310 -193033037 + AluSg SINE Alu 1 310 0 1560 168 14 119 chr4 9295310 9295508 -193032839 + L1M4 LINE L1 5546 5677 -501 355 314 120 11 chr4 9295832 9296023 -193032324 - MIR SINE MIR -1 261 50 357 319 0 0 chr4 9296079 9296170 -193032177 + MIR SINE MIR 2 92 -170 5568 94 31 9 chr4 9296211 9296974 -193031373 + LTR17 LTR ERV1 1 780 0 5191 72 13 21 chr4 9296991 9297690 -193030657 + HERV17 LTR ERV1 17 709 -7917 1339 117 46 11 chr4 9297960 9298241 -193030106 + HERV17 LTR ERV1 929 1219 -5677 914 67 0 22 chr4 9298247 9298381 -193029966 + HERV17 LTR ERV1 3008 3138 -5488 10923 58 14 3 chr4 9298618 9300005 -193028342 + HERV17 LTR ERV1 3185 4587 -4039 18800 52 8 2 chr4 9300106 9302473 -193025874 + HERV17 LTR ERV1 4767 7147 -1479 281 77 0 0 chr4 9302469 9302508 -193025839 + HERV17 LTR ERV1 7510 7548 -1078 * 2403 38 3 0 chr4 9302498 9302789 -193025558 + HERV17 LTR ERV1 8335 8626 0 4967 108 11 16 chr4 9302789 9303533 -193024814 + LTR17 LTR ERV1 1 740 -40 187 300 17 0 chr4 9304486 9304546 -193023801 + MER5A DNA MER1_type 72 132 -57 792 88 0 0 chr4 9304568 9304670 -193023677 + FLAM_C SINE Alu 9 110 -33 677 295 43 9 chr4 9304707 9304917 -193023430 + LTR16C LTR ERVL 275 491 0 4816 30 2 2 chr4 9304948 9305506 -193022841 - LTR6B LTR ERV1 0 558 1 765 153 8 0 chr4 9305581 9305699 -193022648 + FLAM_A SINE Alu 19 137 -5 183 333 0 25 chr4 9305763 9305844 -193022503 - L2 LINE L2 -932 2382 2304 2245 110 0 0 chr4 9306341 9306642 -193021705 + AluSq SINE Alu 1 301 -12 180 326 126 7 chr4 9307253 9307388 -193020959 - L2 LINE L2 -824 2490 2340 2369 62 0 0 chr4 9308008 9308300 -193020047 - AluY SINE Alu -19 292 1 21 0 0 0 chr4 9308302 9308323 -193020024 + AT_rich Low_complexity Low_complexity 1 21 0 875 164 56 80 chr4 9308604 9308817 -193019530 - MER3 DNA MER1_type 0 209 2 713 241 61 70 chr4 9309016 9309316 -193019031 + MLT1C LTR MaLR 102 390 0 1775 223 43 5 chr4 9309733 9309816 -193018531 + LTR2 LTR ERV1 41 119 -330 207 0 0 0 chr4 9309816 9309839 -193018508 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1775 223 43 5 chr4 9309839 9310149 -193018198 + LTR2 LTR ERV1 119 449 0 3694 155 45 66 chr4 9310149 9310977 -193017370 + Harlequin LTR ERV1 1 845 -6968 2456 77 0 19 chr4 9310977 9311287 -193017060 + AluY SINE Alu 2 305 -6 3694 155 45 66 chr4 9311287 9312278 -193016069 + Harlequin LTR ERV1 845 4331 -3482 1133 230 0 0 chr4 9312278 9312478 -193015869 + Harlequin LTR ERV1 1721 1920 -6506 2283 78 0 30 chr4 9312479 9312775 -193015572 + AluY SINE Alu 11 297 -14 343 247 40 51 chr4 9312795 9312918 -193015429 - L1MC4 LINE L1 -1334 6708 6608 569 239 146 0 chr4 9312918 9313048 -193015299 + Harlequin LTR ERV1 1937 2085 -6341 1940 244 13 2 chr4 9313294 9313691 -193014656 + Harlequin LTR ERV1 2069 2469 -5957 574 248 35 21 chr4 9313671 9313816 -193014531 + Harlequin LTR ERV1 3678 3824 -4602 * 6444 190 21 7 chr4 9313806 9314938 -193013409 + Harlequin LTR ERV1 5148 6295 -2131 1406 216 43 25 chr4 9315012 9315517 -193012830 + Harlequin LTR ERV1 7012 7604 -209 500 204 18 9 chr4 9315497 9315610 -193012737 + Harlequin LTR ERV1 6782 6895 -1 * 1702 199 44 49 chr4 9315683 9316094 -193012253 + LTR2 LTR ERV1 41 449 0 3431 123 11 22 chr4 9317496 9318050 -193010297 - LTR14 LTR ERVK 0 548 1 2397 231 57 19 chr4 9318224 9318820 -193009527 - MLT1E2 LTR MaLR -7 619 1 997 225 22 13 chr4 9319204 9319431 -193008916 + MIR SINE MIR 34 262 0 1345 128 0 5 chr4 9319520 9319707 -193008640 + AluSq SINE Alu 77 262 -51 919 107 15 0 chr4 9320569 9320700 -193007647 - AluJb SINE Alu -179 133 1 2273 111 3 3 chr4 9321297 9321603 -193006744 - AluSq SINE Alu -7 306 1 234 290 176 8 chr4 9322842 9322973 -193005374 + MLT1H LTR MaLR 394 546 -3 1613 136 121 4 chr4 9322989 9323261 -193005086 + AluJb SINE Alu 1 304 -8 240 125 0 0 chr4 9323398 9323438 -193004909 - MER11A LTR ERVK -1226 40 1 1680 120 110 45 chr4 9323821 9324137 -193004210 + AluSg SINE Alu 1 335 0 344 243 79 43 chr4 9324851 9324991 -193003356 + L2 LINE L2 3167 3311 -2 219 240 40 0 chr4 9326459 9326534 -193001813 - MIR SINE MIR -109 153 76 1737 148 44 0 chr4 9326891 9327187 -193001160 + AluSx SINE Alu 1 308 0 282 216 72 64 chr4 9327702 9327827 -193000520 + L2 LINE L2 3186 3311 -2 790 250 103 14 chr4 9328409 9328706 -192999641 - L2 LINE L2 -239 3074 2758 675 216 0 0 chr4 9328777 9328911 -192999436 + AluJo SINE Alu 3 136 -176 746 203 6 37 chr4 9328963 9329126 -192999221 - MER20 DNA MER1_type 0 219 62 1289 87 0 0 chr4 9329183 9329366 -192998981 - L1MA2 LINE L1 0 6304 6122 1593 144 0 4 chr4 9329369 9329612 -192998735 + AluSx SINE Alu 1 242 -70 220 292 15 0 chr4 9330316 9330381 -192997966 - L2 LINE L2 -173 3099 3034 340 270 32 53 chr4 9330606 9330795 -192997552 - L1ME4a LINE L1 -148 5973 5789 5920 160 47 19 chr4 9330818 9331930 -192996417 + Tigger2 DNA MER2_type 1 1143 -1575 865 101 7 101 chr4 9331937 9332086 -192996261 + AluJo SINE Alu 1 135 -177 7609 117 56 76 chr4 9332091 9333481 -192994866 + Tigger2 DNA MER2_type 1134 2495 -223 2270 112 30 0 chr4 9333481 9333784 -192994563 - AluSx SINE Alu 0 312 1 7609 117 56 76 chr4 9333784 9333885 -192994462 + Tigger2 DNA MER2_type 2495 2596 -122 9781 53 1 3 chr4 9333985 9335199 -192993148 - HERV17 LTR ERV1 -3501 5125 3915 597 153 7 109 chr4 9335299 9335361 -192992986 + Tigger2 DNA MER2_type 2586 2628 -80 1771 172 0 14 chr4 9335361 9335652 -192992695 + AluJb SINE Alu 1 287 -25 597 153 7 109 chr4 9335652 9335726 -192992621 + Tigger2 DNA MER2_type 2628 2708 0 502 249 30 77 chr4 9335732 9335901 -192992446 - MIR SINE MIR 0 262 102 284 227 159 0 chr4 9336177 9336265 -192992082 - L2 LINE L2 -7 3306 3205 265 194 206 69 chr4 9336788 9336948 -192991399 - L1MC5 LINE L1 -48 7913 7732 1842 113 60 21 chr4 9337012 9337295 -192991052 - AluSx SINE Alu -18 294 1 1724 171 17 10 chr4 9337299 9337592 -192990755 - AluJb SINE Alu -17 295 1 2326 81 3 3 chr4 9338573 9338868 -192989479 + AluSp SINE Alu 1 295 -18 2341 92 0 0 chr4 9338869 9339182 -192989165 + AluSc SINE Alu 1 313 0 271 145 48 0 chr4 9340065 9340127 -192988220 - L1MCc LINE L1 -6174 249 185 508 216 50 4 chr4 9340581 9340804 -192987543 + MER33 DNA MER1_type 1 324 0 2056 151 6 3 chr4 9341314 9341671 -192986676 + L1PA16 LINE L1 5798 6155 -11 232 273 45 0 chr4 9343160 9343226 -192985121 + MIR SINE MIR 66 134 -74 1900 147 33 3 chr4 9343917 9344217 -192984130 - AluSq SINE Alu -4 309 1 190 250 19 0 chr4 9348245 9348297 -192980050 - L2 LINE L2 -78 3194 3142 237 349 0 0 chr4 9348469 9348552 -192979795 - L1MC5 LINE L1 -168 7793 7711 340 273 108 14 chr4 9348625 9348764 -192979583 - L2 LINE L2 -201 3071 2920 1830 171 10 10 chr4 9353182 9353486 -192974861 - AluJo SINE Alu -8 304 1 1871 198 122 25 chr4 9355764 9356315 -192972032 - Tigger3(Golem) DNA MER2_type -1 3028 2425 1096 144 214 19 chr4 9356315 9356530 -192971817 - AluJb SINE Alu -3 309 53 2767 216 47 8 chr4 9356535 9357156 -192971191 - MER50 LTR ERV1 -7 727 83 4565 116 36 25 chr4 9357158 9357906 -192970441 + MER4E LTR ERV1 3 758 -21 327 158 24 49 chr4 9357945 9358027 -192970320 - MER50 LTR ERV1 -648 86 7 259 105 0 0 chr4 9358033 9358071 -192970276 - AluJb SINE Alu -244 58 21 3886 157 40 11 chr4 9358073 9358819 -192969528 - Tigger3(Golem) DNA MER2_type -616 2413 1646 3309 56 14 5 chr4 9358845 9359289 -192969058 - LTR7 LTR ERV1 -2 448 1 2333 98 45 3 chr4 9359289 9359665 -192968682 - HERVH LTR ERV1 0 7713 7322 1300 128 20 0 chr4 9359663 9359867 -192968480 - HERVH LTR ERV1 -1894 5819 5612 * 4226 146 8 1 chr4 9359886 9360544 -192967803 - HERVH LTR ERV1 -2564 5149 4488 22507 96 15 25 chr4 9360547 9364706 -192963641 - HERVH LTR ERV1 -3721 3992 1 3523 62 7 7 chr4 9364708 9365156 -192963191 - LTR7 LTR ERV1 -2 448 1 2073 179 40 109 chr4 9365156 9365758 -192962589 - Tigger3(Golem) DNA MER2_type -1391 1638 1079 2981 163 47 29 chr4 9365758 9365896 -192962451 + LTR8A LTR ERV1 1 135 -592 2159 85 0 3 chr4 9365896 9366229 -192962118 - AluSx SINE Alu 0 332 1 2981 163 47 29 chr4 9366229 9366702 -192961645 + LTR8A LTR ERV1 135 624 -103 6816 139 95 112 chr4 9366704 9368423 -192959924 - pTR5 LTR ERV1 -5 2433 744 652 184 0 0 chr4 9368423 9368537 -192959810 + LTR8A LTR ERV1 614 727 0 1756 151 38 0 chr4 9368537 9368824 -192959523 - Tigger3(Golem) DNA MER2_type -1947 1082 785 867 105 0 59 chr4 9368824 9368975 -192959372 + LTR8 LTR ERV1 1 142 -549 2045 101 14 22 chr4 9368975 9369503 -192958844 + MER4A LTR ERV1 1 664 0 3066 175 9 30 chr4 9369503 9370068 -192958279 + LTR8 LTR ERV1 139 691 0 1717 196 9 92 chr4 9370068 9370527 -192957820 - Tigger3(Golem) DNA MER2_type -2241 788 369 4556 104 7 35 chr4 9370545 9371226 -192957121 + MER4A LTR ERV1 1 662 -2 646 88 8 96 chr4 9371234 9371359 -192956988 - MER4A LTR ERV1 -522 142 29 281 242 0 0 chr4 9371359 9371421 -192956926 - Tigger3(Golem) DNA MER2_type -2963 66 5 430 243 43 3 chr4 9371708 9371858 -192956489 - MIR SINE MIR -62 146 1 379 342 75 5 chr4 9371892 9372091 -192956256 - MER113 DNA MER1_type? -308 213 1 1632 152 147 134 chr4 9372171 9372797 -192955550 + MER51A LTR ERV1 1 634 0 201 74 0 0 chr4 9373228 9373255 -192955092 + (T)n Simple_repeat Simple_repeat 1 27 0 34 24 0 0 chr4 9373271 9373312 -192955035 + AT_rich Low_complexity Low_complexity 1 41 0 3286 96 111 50 chr4 9373390 9373815 -192954532 + LTR61 LTR ERV1 1 471 -124 2271 74 0 0 chr4 9373815 9374122 -192954225 + AluY SINE Alu 1 307 0 3286 96 111 50 chr4 9374122 9374256 -192954091 + LTR61 LTR ERV1 471 595 0 455 355 46 30 chr4 9374467 9374771 -192953576 - L1ME LINE L1 -5653 552 168 1544 102 9 13 chr4 9374778 9375004 -192953343 - MSTA LTR MaLR 0 428 204 245 312 45 38 chr4 9375659 9375816 -192952531 + MER67B LTR ERV1 4 161 -500 209 211 18 0 chr4 9375970 9376027 -192952320 + (GGGTG)n Simple_repeat Simple_repeat 4 61 0 1195 217 11 22 chr4 9376088 9376365 -192951982 + L1PA15 LINE L1 5891 6164 -1 1522 147 139 8 chr4 9376380 9376638 -192951709 + AluJo SINE Alu 5 296 -6 2001 137 0 13 chr4 9376639 9376954 -192951393 + AluSx SINE Alu 1 311 -1 257 330 59 8 chr4 9376958 9377076 -192951271 + MER67A LTR ERV1 403 526 -17 1770 141 0 17 chr4 9377084 9377374 -192950973 - AluSx SINE Alu -10 302 18 194 250 42 0 chr4 9377564 9377612 -192950735 - L2 LINE L2 -23 3290 3241 637 277 69 26 chr4 9377790 9378021 -192950326 + MIR SINE MIR 19 259 -3 226 344 0 0 chr4 9378091 9378152 -192950195 + polypyrimidine Low_complexity Low_complexity 5 65 0 187 349 63 24 chr4 9378199 9378325 -192950022 + MIR3 SINE MIR 58 188 -20 1088 227 175 58 chr4 9378812 9379327 -192949020 - MLT1E LTR MaLR -17 576 2 193 246 108 0 chr4 9379506 9379571 -192948776 + MIR3 SINE MIR 85 156 -52 385 292 48 30 chr4 9382025 9382128 -192946219 - MIR SINE MIR -74 188 79 2218 139 50 6 chr4 9382128 9382487 -192945860 + THE1C LTR MaLR 1 375 0 385 292 48 30 chr4 9382487 9382551 -192945796 - MIR SINE MIR -183 79 18 291 262 60 0 chr4 9383952 9384036 -192944311 + CT-rich Low_complexity Low_complexity 5 93 0 2172 127 0 0 chr4 9384317 9384625 -192943722 - AluSq SINE Alu -5 308 1 262 80 40 0 chr4 9385611 9385661 -192942686 + GA-rich Low_complexity Low_complexity 2 53 0 329 155 17 0 chr4 9385807 9385865 -192942482 - LTR16A1 LTR ERVL -1 456 398 290 239 15 0 chr4 9386027 9386094 -192942253 - MIR SINE MIR -113 149 82 221 276 86 9 chr4 9386383 9386488 -192941859 - L2 LINE L2 -974 2340 2228 1015 214 58 69 chr4 9386602 9386995 -192941352 - MLT1D LTR MaLR -113 392 4 538 167 65 51 chr4 9387782 9387920 -192940427 + MLT1D LTR MaLR 3 142 -363 556 144 0 27 chr4 9387926 9388037 -192940310 + Ricksha DNA DNA 8 115 -1139 * 1474 123 4 41 chr4 9388023 9388267 -192940080 + Ricksha DNA DNA 1710 1944 -1302 * 2859 136 36 51 chr4 9388257 9388479 -192939868 + Ricksha DNA DNA 2259 2483 -763 2103 115 0 13 chr4 9388479 9388783 -192939564 - AluSx SINE Alu -10 302 3 2859 136 36 51 chr4 9388783 9389172 -192939175 + Ricksha DNA DNA 2483 2861 -385 780 108 234 0 chr4 9389179 9389337 -192939010 + Ricksha DNA DNA 2534 2728 -126 1393 137 18 18 chr4 9389341 9389568 -192938779 - AluSx SINE Alu -22 290 64 2088 128 9 23 chr4 9389568 9389911 -192938436 - THE1B LTR MaLR -26 338 1 899 293 46 16 chr4 9389916 9390489 -192937858 + L1ME LINE L1 5100 5691 -479 1858 93 3 68 chr4 9390668 9390989 -192937358 - AluSq SINE Alu -6 307 8 233 203 65 130 chr4 9391100 9391223 -192937124 + L1ME3A LINE L1 6039 6153 -17 1921 153 0 3 chr4 9391378 9391686 -192936661 - AluJb SINE Alu -5 307 1 217 357 62 23 chr4 9391686 9391807 -192936540 - L2 LINE L2 -12 3301 3173 355 306 59 27 chr4 9391880 9392099 -192936248 - L2 LINE L2 -85 3187 2962 202 326 53 0 chr4 9392123 9392218 -192936129 + L2 LINE L2 2945 3044 -269 1540 233 51 53 chr4 9392482 9392917 -192935430 + LTR26 LTR ERV1 1 436 -167 1835 161 10 3 chr4 9392917 9393227 -192935120 + AluJo SINE Alu 1 312 0 1540 233 51 53 chr4 9393227 9393285 -192935062 + LTR26 LTR ERV1 436 493 -110 245 303 59 8 chr4 9393905 9394024 -192934323 + MIR3 SINE MIR 59 183 -25 2566 50 0 0 chr4 9395090 9395393 -192932954 + AluY SINE Alu 1 303 -8 383 231 33 0 chr4 9396284 9396375 -192931972 + MIR3 SINE MIR 61 154 -54 757 278 66 66 chr4 9396524 9396873 -192931474 + MLT1J LTR MaLR 157 505 -6 2386 258 27 0 chr4 9397061 9397754 -192930593 + L1M4 LINE L1 3276 3987 -2159 2129 130 0 0 chr4 9397830 9398137 -192930210 + AluSx SINE Alu 1 307 -5 293 226 48 0 chr4 9398153 9398237 -192930110 + L1M4 LINE L1 4643 4730 -1416 225 285 154 32 chr4 9398264 9398387 -192929960 - MIR SINE MIR -70 192 55 * 321 291 27 9 chr4 9398378 9398488 -192929859 + L2 LINE L2 3158 3269 -3 313 286 0 0 chr4 9399041 9399118 -192929229 - MIR SINE MIR -77 185 109 315 0 0 0 chr4 9399118 9399153 -192929194 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 269 317 60 11 chr4 9400139 9400325 -192928022 - MIR SINE MIR -1 261 64 199 252 191 17 chr4 9400410 9400525 -192927822 - L2 LINE L2 -181 3091 2957 306 404 0 0 chr4 9400561 9400727 -192927620 + L1M4 LINE L1 4879 5044 -1102 2106 126 3 22 chr4 9400727 9401044 -192927303 + AluSx SINE Alu 1 311 -1 259 281 112 0 chr4 9401422 9401511 -192926836 + MER5C DNA MER1_type 11 109 -215 224 333 30 20 chr4 9402776 9402875 -192925472 - MIR SINE MIR -113 149 50 372 289 92 80 chr4 9403411 9403650 -192924697 - L1ME1 LINE L1 0 6164 5920 855 149 0 15 chr4 9403650 9403784 -192924563 + FLAM_C SINE Alu 1 132 -1 406 179 51 103 chr4 9403988 9404144 -192924203 - L1MDa LINE L1 -4924 1482 1335 1594 201 23 18 chr4 9404154 9404538 -192923809 - L1MB7 LINE L1 -16 6168 5783 1787 177 3 0 chr4 9404551 9404856 -192923491 - AluJb SINE Alu -6 306 1 951 119 8 0 chr4 9404856 9404990 -192923357 - AluJo SINE Alu -177 135 1 2627 222 106 88 chr4 9404990 9405372 -192922975 - L1MB7 LINE L1 -392 5786 5412 1520 239 42 22 chr4 9405372 9405728 -192922619 - MLT1A1 LTR MaLR 0 365 3 2627 222 106 88 chr4 9405728 9406266 -192922081 - L1MB7 LINE L1 -766 5412 4885 604 178 178 38 chr4 9406266 9406399 -192921948 - AluJb SINE Alu -21 291 131 1967 135 10 0 chr4 9406399 9406688 -192921659 - AluSx SINE Alu -20 292 1 604 178 178 38 chr4 9406688 9406711 -192921636 - AluJb SINE Alu -181 131 113 2627 222 106 88 chr4 9406711 9407443 -192920904 - L1MB7 LINE L1 -1293 4885 3934 1956 129 0 7 chr4 9407445 9407731 -192920616 + AluSq SINE Alu 1 329 0 406 0 0 0 chr4 9407731 9407776 -192920571 + (TAA)n Simple_repeat Simple_repeat 2 180 0 857 288 30 44 chr4 9407795 9407855 -192920492 - L1MDa LINE L1 -5063 1346 1287 1565 184 3 58 chr4 9407855 9408182 -192920165 - AluJo SINE Alu -3 309 1 857 288 30 44 chr4 9408182 9408552 -192919795 - L1MDa LINE L1 -5122 1287 922 409 99 0 113 chr4 9408562 9408633 -192919714 + AluS SINE Alu 9 71 -242 2082 124 29 29 chr4 9408633 9408979 -192919368 - MER4D LTR ERV1 -556 347 2 440 267 31 63 chr4 9408981 9409172 -192919175 + MLT1J1 LTR MaLR 235 419 -27 1763 149 4 4 chr4 9409328 9409636 -192918711 + AluSx SINE Alu 3 310 0 1938 156 0 0 chr4 9409975 9410282 -192918065 - AluJb SINE Alu -1 311 5 468 188 170 0 chr4 9410628 9410739 -192917608 + MER45C DNA AcHobo 58 187 -766 4710 132 101 11 chr4 9410739 9411316 -192917031 + MER4D LTR ERV1 1 675 -228 2183 137 16 44 chr4 9411316 9411702 -192916645 - THE1C LTR MaLR 0 375 1 4710 132 101 11 chr4 9411702 9411945 -192916402 + MER4D LTR ERV1 675 895 -8 353 273 91 0 chr4 9411975 9412085 -192916262 + MER45C DNA AcHobo 284 403 -550 637 297 86 0 chr4 9412085 9412294 -192916053 + MER45C DNA AcHobo 706 932 -21 274 333 19 19 chr4 9412555 9412663 -192915684 - L2 LINE L2 -3 3269 3162 231 279 33 41 chr4 9413408 9413530 -192914817 - L2 LINE L2 -235 3037 2917 265 235 49 49 chr4 9415251 9415353 -192912994 - MIR SINE MIR -90 118 17 282 350 148 11 chr4 9415498 9415681 -192912666 + MIR SINE MIR 49 256 -6 393 177 25 13 chr4 9416917 9416996 -192911351 - MIR SINE MIR -77 185 106 594 263 119 19 chr4 9417122 9417505 -192910842 - MLT1C LTR MaLR -9 458 64 1854 155 13 3 chr4 9417887 9418190 -192910157 - AluJb SINE Alu -6 306 1 456 141 65 11 chr4 9418290 9418382 -192909965 + AluSg/x SINE Alu 193 289 -20 201 333 127 24 chr4 9418571 9418784 -192909563 - L2 LINE L2 -253 3060 2826 1891 104 16 167 chr4 9420013 9420455 -192907892 + THE1C LTR MaLR 1 375 0 189 280 115 48 chr4 9420840 9421086 -192907261 - L2 LINE L2 -277 3036 2722 915 260 108 25 chr4 9422312 9422674 -192905673 - LTR34 LTR ERV1 -4 695 304 353 222 89 0 chr4 9422677 9422767 -192905580 + MLT1D LTR MaLR 6 103 -402 476 163 0 12 chr4 9422776 9422856 -192905491 + MER4A LTR ERV1 20 98 -566 * 1604 177 6 22 chr4 9422852 9423202 -192905145 + MER4A LTR ERV1 257 659 -5 333 243 56 9 chr4 9423344 9423451 -192904896 + MLT1D LTR MaLR 285 396 -71 788 155 21 14 chr4 9423703 9423845 -192904502 + MER4B LTR ERV1 1 143 -467 * 2743 102 13 0 chr4 9423838 9424232 -192904115 + LTR8 LTR ERV1 293 691 0 1058 264 60 31 chr4 9424723 9425144 -192903203 + MLT2B1 LTR ERVL 7 517 -37 211 93 47 0 chr4 9425144 9425187 -192903160 + CT-rich Low_complexity Low_complexity 2 46 0 257 112 0 5 chr4 9425187 9425241 -192903106 + MLT2B1 LTR ERVL 480 519 -1 377 247 0 12 chr4 9425252 9425337 -192903010 - MER63 DNA MER1_type -299 762 679 907 191 98 16 chr4 9426441 9426635 -192901712 + MSTD LTR MaLR 187 396 0 226 333 0 0 chr4 9426985 9427057 -192901290 + MLT1L LTR MaLR 3 74 -541 1930 137 0 31 chr4 9427634 9427955 -192900392 - AluSx SINE Alu -1 311 1 702 257 91 53 chr4 9427992 9428257 -192900090 + MLT1J LTR MaLR 234 508 -3 227 359 35 7 chr4 9428812 9428957 -192899390 + L2 LINE L2 2368 2516 -798 285 292 115 9 chr4 9428966 9429079 -192899268 - L3 LINE CR1 -100 1477 1353 189 189 38 19 chr4 9429062 9429115 -192899232 + L2 LINE L2 2921 2974 -340 * 257 306 65 0 chr4 9429429 9429537 -192898810 + L2 LINE L2 3155 3269 -3 216 225 127 0 chr4 9429601 9429672 -192898675 + MIR SINE MIR 119 198 -64 199 133 0 0 chr4 9429683 9429713 -192898634 + MIR SINE MIR 116 145 -63 1969 147 0 0 chr4 9430193 9430492 -192897855 - AluSx SINE Alu -13 299 1 535 211 92 66 chr4 9430625 9430852 -192897495 + MLT1E1 LTR MaLR 1 233 -391 736 262 91 18 chr4 9430892 9431167 -192897180 + MLT1E1 LTR MaLR 359 653 -1 1708 153 76 138 chr4 9431454 9431798 -192896549 + Tigger2a DNA MER2_type 1 310 -2398 2109 132 0 0 chr4 9431798 9432109 -192896238 + AluSx SINE Alu 1 311 -1 1708 153 76 138 chr4 9432109 9432227 -192896120 + Tigger2a DNA MER2_type 310 434 0 180 161 0 0 chr4 9433049 9433080 -192895267 + L2 LINE L2 3238 3268 -4 2013 112 14 0 chr4 9433269 9433564 -192894783 - AluSq SINE Alu -14 299 1 190 107 0 0 chr4 9434019 9434047 -192894300 + MIR SINE MIR 117 144 -118 245 247 206 0 chr4 9435191 9435288 -192893059 - MIR SINE MIR -61 147 31 1049 233 84 104 chr4 9435798 9436202 -192892145 + MLT2C1 LTR ERVL 1 396 -1 331 276 112 8 chr4 9436243 9436377 -192891970 - L2 LINE L2 0 3313 3166 566 311 48 0 chr4 9436910 9437077 -192891270 + MER63A DNA MER1_type 1 175 -35 420 330 40 44 chr4 9437520 9437702 -192890645 + MIR SINE MIR 26 208 -54 2298 96 0 0 chr4 9437702 9438005 -192890342 + AluSg SINE Alu 1 303 -7 420 330 40 44 chr4 9438005 9438049 -192890298 + MIR SINE MIR 208 251 -11 237 244 0 0 chr4 9438075 9438161 -192890186 + (CACCAT)n Simple_repeat Simple_repeat 5 90 0 2491 139 93 14 chr4 9438176 9438606 -192889741 - MER4C LTR ERV1 0 465 2 8857 162 53 56 chr4 9438631 9439944 -192888403 - MER4C-int LTR ERV1 -14 6584 5268 1622 155 30 33 chr4 9439944 9440247 -192888100 + AluSx SINE Alu 1 302 -10 2025 122 10 7 chr4 9440255 9440549 -192887798 + AluSg SINE Alu 1 295 -15 8857 162 53 56 chr4 9440549 9441369 -192886978 - MER4C-int LTR ERV1 -1337 5261 4440 207 0 0 0 chr4 9441369 9441392 -192886955 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8857 162 53 56 chr4 9441392 9441545 -192886802 - MER4C-int LTR ERV1 -2158 4440 4288 2133 69 54 0 chr4 9441545 9441822 -192886525 - AluY SINE Alu -19 292 1 8857 162 53 56 chr4 9441822 9441904 -192886443 - MER4C-int LTR ERV1 -2310 4288 4207 279 0 0 0 chr4 9441904 9441935 -192886412 + (TTA)n Simple_repeat Simple_repeat 1 31 0 8857 162 53 56 chr4 9441935 9442316 -192886031 - MER4C-int LTR ERV1 -2391 4207 3826 2044 132 7 0 chr4 9442316 9442620 -192885727 + AluSq SINE Alu 1 306 -7 8857 162 53 56 chr4 9442620 9442723 -192885624 - MER4C-int LTR ERV1 -2772 3826 3724 1738 157 0 0 chr4 9442723 9442991 -192885356 + AluJb SINE Alu 1 268 -44 8857 162 53 56 chr4 9442991 9443258 -192885089 - MER4C-int LTR ERV1 -2874 3724 3652 2127 103 10 16 chr4 9443258 9443569 -192884778 + AluSc SINE Alu 1 309 0 8857 162 53 56 chr4 9443569 9443720 -192884627 - MER4C-int LTR ERV1 -2946 3652 3502 1190 206 70 86 chr4 9443722 9444396 -192883951 - MER4A LTR ERV1 0 779 1 3816 159 45 14 chr4 9444397 9445125 -192883222 - MER4D LTR ERV1 -150 753 3 1358 167 52 114 chr4 9445158 9445245 -192883102 - MER4C-int LTR ERV1 -4343 2415 2324 1453 133 0 0 chr4 9445245 9445455 -192882892 - AluSq SINE Alu -16 297 88 1358 167 52 114 chr4 9445455 9445996 -192882351 - MER4C-int LTR ERV1 -4434 2324 1826 732 140 0 0 chr4 9445996 9446110 -192882237 - AluSg/x SINE Alu -15 297 184 1460 158 40 62 chr4 9446282 9446682 -192881665 - MER4C-int LTR ERV1 -5523 1235 845 884 118 0 0 chr4 9446763 9446890 -192881457 - AluJb SINE Alu -185 127 1 5554 139 33 12 chr4 9446895 9447797 -192880550 - MER4B-int LTR ERV1 -2692 4066 3146 495 301 62 40 chr4 9447797 9448023 -192880324 - MIR SINE MIR -11 251 21 236 383 40 20 chr4 9448444 9448593 -192879754 + MIR SINE MIR 63 214 -48 936 140 33 0 chr4 9449134 9449284 -192879063 - FRAM SINE Alu -12 164 10 330 95 19 3 chr4 9450050 9450269 -192878078 + AluSx SINE Alu 1 295 -7 1802 163 0 3 chr4 9450269 9450564 -192877783 - AluJb SINE Alu -18 294 1 194 342 38 0 chr4 9451011 9451090 -192877257 - L2 LINE L2 0 3272 3191 206 306 48 32 chr4 9451357 9451481 -192876866 - MIR SINE MIR -14 248 123 327 169 0 0 chr4 9451764 9451835 -192876512 + (TG)n Simple_repeat Simple_repeat 1 71 0 364 295 20 67 chr4 9453063 9453212 -192875135 - MIR SINE MIR -19 243 102 180 204 23 0 chr4 9453216 9453260 -192875087 - MIR SINE MIR -107 155 111 307 215 9 47 chr4 9453721 9453828 -192874519 + CT-rich Low_complexity Low_complexity 1 103 0 285 286 76 0 chr4 9457655 9457774 -192870573 + (CATG)n Simple_repeat Simple_repeat 1 128 0 273 360 0 0 chr4 9458115 9458201 -192870146 - L2 LINE L2 -1 3271 3186 316 327 73 7 chr4 9458403 9458553 -192869794 - MARNA DNA Mariner -30 556 397 192 40 0 0 chr4 9459415 9459440 -192868907 + (CCTG)n Simple_repeat Simple_repeat 2 26 0 186 359 126 0 chr4 9460517 9460620 -192867727 - MIR SINE MIR -114 148 33 215 292 0 0 chr4 9461198 9461269 -192867078 + MIR SINE MIR 63 134 -74 207 171 0 0 chr4 9462133 9462168 -192866179 + (TGAG)n Simple_repeat Simple_repeat 4 38 0 1903 138 0 14 chr4 9462521 9462812 -192865535 - AluJb SINE Alu -25 287 1 180 0 0 0 chr4 9463552 9463572 -192864775 + (T)n Simple_repeat Simple_repeat 1 20 0 266 227 61 0 chr4 9465304 9465370 -192862977 - HsTC2 DNA Tc2 -4 1894 1825 21 0 0 0 chr4 9466408 9466429 -192861918 + GC_rich Low_complexity Low_complexity 1 21 0 244 219 68 14 chr4 9468088 9468161 -192860186 + MIR SINE MIR 46 122 -140 1108 197 58 39 chr4 9468303 9468412 -192859935 - MER33 DNA MER1_type -2261 324 219 2397 74 0 0 chr4 9468412 9468710 -192859637 - AluY SINE Alu -13 298 1 1108 197 58 39 chr4 9468710 9468910 -192859437 - MER33 DNA MER1_type -2366 219 9 1148 271 75 29 chr4 9469308 9469692 -192858655 + MLT1C LTR MaLR 1 409 -58 2256 95 7 0 chr4 9469692 9469988 -192858359 - AluSg SINE Alu -12 298 1 1148 271 75 29 chr4 9469988 9470046 -192858301 + MLT1C LTR MaLR 409 463 -4 417 237 22 74 chr4 9470208 9470343 -192858004 - MIR SINE MIR -29 233 106 209 359 106 0 chr4 9471448 9471590 -192856757 - MIR SINE MIR -67 195 39 350 330 26 0 chr4 9472854 9472969 -192855378 + MIR SINE MIR 75 192 -70 212 394 44 22 chr4 9473484 9473621 -192854726 + MIR SINE MIR 91 230 -32 23 0 0 0 chr4 9473760 9473783 -192854564 + AT_rich Low_complexity Low_complexity 1 23 0 863 144 0 8 chr4 9473783 9473915 -192854432 - FLAM_C SINE Alu -1 132 2 305 285 149 14 chr4 9475455 9475669 -192852678 - MER76 LTR ERV -444 244 2 428 281 36 36 chr4 9475939 9476135 -192852212 + MER3 DNA MER1_type 14 209 0 214 370 11 22 chr4 9476314 9476406 -192851941 - L2 LINE L2 0 3272 3182 1969 85 0 4 chr4 9478120 9478380 -192849967 - AluSq SINE Alu -14 299 41 318 236 0 14 chr4 9478841 9478913 -192849434 - MIR SINE MIR -64 144 74 782 147 17 17 chr4 9478946 9479123 -192849224 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 523 170 33 0 chr4 9479144 9479297 -192849050 + (TCCA)n Simple_repeat Simple_repeat 1 158 0 227 194 183 32 chr4 9480657 9480750 -192847597 + MIR SINE MIR 109 215 -47 210 222 0 0 chr4 9482280 9482334 -192846013 + (TG)n Simple_repeat Simple_repeat 1 54 0 205 393 40 0 chr4 9482355 9482505 -192845842 - L2 LINE L2 -192 3080 2925 889 192 7 9 chr4 9482652 9483114 -192845233 + (CTCA)n Simple_repeat Simple_repeat 1 461 0 825 138 0 0 chr4 9484637 9484782 -192843565 + (CTCA)n Simple_repeat Simple_repeat 3 147 0 231 226 24 60 chr4 9485478 9485562 -192842785 + L2 LINE L2 2900 2980 -292 310 219 24 137 chr4 9486127 9486332 -192842015 - MER53 DNA DNA 0 189 8 2363 87 0 0 chr4 9486796 9487096 -192841251 - AluSc SINE Alu -9 300 1 311 333 115 19 chr4 9487657 9487813 -192840534 + MIR SINE MIR 6 176 -86 262 346 74 0 chr4 9488448 9488610 -192839737 - L2 LINE L2 -174 3098 2925 327 306 101 34 chr4 9490107 9490375 -192837972 - L2 LINE L2 -92 3180 2895 318 267 56 0 chr4 9490925 9491015 -192837332 - MIR SINE MIR -120 142 48 488 266 145 5 chr4 9491077 9491284 -192837063 + ORSL DNA AcHobo 1 236 -39 243 245 38 33 chr4 9491888 9492008 -192836339 - MIR SINE MIR -64 144 21 264 331 16 16 chr4 9492691 9492815 -192835532 - L2 LINE L2 -212 3060 2937 972 225 80 37 chr4 9494097 9494422 -192833925 - MLT1B LTR MaLR -48 342 4 2121 98 0 53 chr4 9495365 9495683 -192832664 - AluSx SINE Alu -11 301 1 1636 211 107 31 chr4 9495795 9496208 -192832139 + MER65A LTR ERV1 1 444 -1 330 269 35 58 chr4 9496210 9496342 -192832005 - L1MC4a LINE L1 -1087 6721 6592 1644 115 48 83 chr4 9496342 9496656 -192831691 + AluSg1 SINE Alu 1 303 -6 330 269 35 58 chr4 9496656 9496694 -192831653 - L1MC4a LINE L1 -1216 6592 6555 318 345 79 0 chr4 9497232 9497371 -192830976 + HAL1 LINE L1 1114 1263 -1244 1993 96 0 38 chr4 9497371 9497693 -192830654 + AluSx SINE Alu 1 311 0 353 355 103 34 chr4 9497788 9497973 -192830374 - MIR SINE MIR 0 262 56 2451 58 0 13 chr4 9497973 9498286 -192830061 + AluY SINE Alu 1 309 -2 353 355 103 34 chr4 9498286 9498334 -192830013 - MIR SINE MIR -206 56 13 2278 81 0 0 chr4 9499023 9499318 -192829029 + AluSg SINE Alu 1 295 -15 932 231 80 37 chr4 9499748 9500073 -192828274 - MLT1B LTR MaLR -48 342 4 243 282 168 30 chr4 9500659 9500790 -192827557 + MIR SINE MIR 44 192 -70 263 238 48 0 chr4 9500817 9500901 -192827446 - L1M4 LINE L1 -1416 4730 4643 2200 102 7 0 chr4 9500917 9501221 -192827126 - AluY SINE Alu -5 306 1 1236 164 18 13 chr4 9501354 9501579 -192826768 + AluJb SINE Alu 42 267 -45 1593 217 54 6 chr4 9501579 9502099 -192826248 + L1M4 LINE L1 4813 5357 -789 701 162 0 11 chr4 9502302 9502481 -192825866 + (CGTG)n Simple_repeat Simple_repeat 3 179 0 210 302 21 0 chr4 9502511 9502607 -192825740 + (AGCGG)n Simple_repeat Simple_repeat 2 99 0 229 206 22 0 chr4 9502631 9502723 -192825624 + (AGCGG)n Simple_repeat Simple_repeat 1 94 0 2681 143 59 36 chr4 9503499 9504157 -192824190 + LOR1-int LTR ERV1 793 1465 -6655 1633 153 4 4 chr4 9504158 9504426 -192823921 + AluSx SINE Alu 1 268 -44 576 70 0 0 chr4 9704653 9704739 -192623608 + (TC)n Simple_repeat Simple_repeat 1 86 0 291 28 0 0 chr4 9705937 9705973 -192622374 + (TG)n Simple_repeat Simple_repeat 1 36 0 2065 109 4 0 chr4 9706598 9706873 -192621474 - AluSx SINE Alu -36 276 1 862 235 40 0 chr4 9708651 9708851 -192619496 + MER58A DNA MER1_type 1 208 -16 435 59 176 0 chr4 9710082 9710150 -192618197 + MADE1 DNA Mariner 1 80 0 609 139 10 0 chr4 9710684 9710785 -192617562 - AluSg/x SINE Alu 0 309 208 21410 64 1 1 chr4 9710886 9713491 -192614856 + HERVE LTR ERV1 4439 7042 -771 1968 251 87 33 chr4 9713620 9714341 -192614006 + L2 LINE L2 1622 2381 -933 611 256 77 93 chr4 9714692 9714816 -192613531 - L1MCc LINE L1 -5921 502 377 1775 76 69 65 chr4 9714816 9715093 -192613254 + AluSg SINE Alu 1 278 -32 1122 50 6 12 chr4 9715094 9715254 -192613093 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 611 256 77 93 chr4 9715254 9715619 -192612728 - L1MCc LINE L1 -6045 378 19 355 359 30 6 chr4 9715729 9715896 -192612451 - L1MEc LINE L1 -4658 1738 1568 23 78 0 0 chr4 9716006 9716057 -192612290 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr4 9716286 9716310 -192612037 + AT_rich Low_complexity Low_complexity 1 24 0 2032 122 3 53 chr4 9716320 9716640 -192611707 - AluSg SINE Alu -6 304 1 21 36 0 0 chr4 9718241 9718269 -192610078 + AT_rich Low_complexity Low_complexity 1 28 0 750 206 0 0 chr4 9718490 9718616 -192609731 - FLAM_C SINE Alu -17 126 1 3183 209 25 80 chr4 9718830 9719855 -192608492 + LTR5 LTR ERVK 1 969 0 34105 189 14 15 chr4 9719855 9727279 -192601068 + HERVK LTR ERVK 1 7289 -128 2642 224 21 79 chr4 9727391 9728363 -192599984 + LTR5 LTR ERVK 55 969 0 439 263 96 13 chr4 9728677 9728833 -192599514 + MIR SINE MIR 79 247 -15 309 272 76 0 chr4 9728862 9728954 -192599393 + L2 LINE L2 3162 3260 -12 510 247 34 21 chr4 9729317 9729514 -192598833 + MIR SINE MIR 23 217 -45 2196 125 0 0 chr4 9729538 9729834 -192598513 + AluSq SINE Alu 1 296 -17 3417 130 39 2 chr4 9729921 9730428 -192597919 + MER1A DNA MER1_type 1 526 -1 719 181 36 104 chr4 9730445 9730594 -192597753 + MER3 DNA MER1_type 4 135 -74 2109 128 3 0 chr4 9730594 9730883 -192597464 - AluSx SINE Alu -16 296 7 719 181 36 104 chr4 9730883 9730954 -192597393 + MER3 DNA MER1_type 135 209 0 679 237 95 0 chr4 9731103 9731293 -192597054 - MIR SINE MIR -6 256 49 5580 73 1 1 chr4 9732009 9732709 -192595638 + HERVE LTR ERV1 7113 7812 -1 1637 221 47 44 chr4 9732798 9733206 -192595141 + LTR2 LTR ERV1 41 449 0 4161 79 0 4 chr4 9733206 9733760 -192594587 + HERVH LTR ERV1 3442 3993 -3720 4316 153 1 1 chr4 9733762 9734424 -192593923 + HERVH LTR ERV1 4488 5149 -2564 1367 118 43 0 chr4 9734425 9734636 -192593711 + HERVH LTR ERV1 5600 5819 -1894 2441 98 45 13 chr4 9734636 9735014 -192593333 + HERVH LTR ERV1 7324 7713 0 2479 93 128 5 chr4 9735015 9735413 -192592934 + LTR7 LTR ERV1 2 448 -2 2323 96 3 0 chr4 9735425 9735727 -192592620 - AluSp SINE Alu -8 305 3 563 242 27 32 chr4 9735737 9735923 -192592424 - MLT1D LTR MaLR -320 185 1 219 350 34 17 chr4 9737103 9737220 -192591127 - L2 LINE L2 -15 3298 3180 1866 155 7 36 chr4 9737258 9737567 -192590780 + AluSx SINE Alu 1 300 -12 378 0 0 0 chr4 9737853 9737895 -192590452 + (CAT)n Simple_repeat Simple_repeat 3 44 0 730 160 80 8 chr4 9738005 9738130 -192590217 + THE1B LTR MaLR 196 329 -35 258 207 0 0 chr4 9739126 9739184 -192589163 + GA-rich Low_complexity Low_complexity 2 59 0 4148 289 25 38 chr4 9740089 9741743 -192586604 + L1PBa LINE L1 6 1639 -5224 743 189 10 136 chr4 9741720 9741926 -192586421 + L1PBb LINE L1 14 193 -6011 * 1431 189 0 20 chr4 9741929 9742183 -192586164 + L1M1 LINE L1 554 802 -6763 1117 103 59 49 chr4 9742176 9742379 -192585968 + THE1C-int LTR MaLR 1376 1580 0 * 1604 176 65 49 chr4 9742379 9742748 -192585599 + THE1C LTR MaLR 1 375 0 330 252 0 23 chr4 9743805 9743936 -192584411 + (TTA)n Simple_repeat Simple_repeat 2 129 0 252 120 0 0 chr4 9745593 9745643 -192582704 + (CA)n Simple_repeat Simple_repeat 1 50 0 10632 125 3 6 chr4 9745699 9747851 -192580496 + L1PA8A LINE L1 3700 5847 -284 2071 149 0 3 chr4 9747972 9748280 -192580067 + AluSg SINE Alu 1 307 -3 302 258 50 75 chr4 9748335 9748494 -192579853 - L2 LINE L2 0 3313 3159 982 207 69 0 chr4 9748653 9748870 -192579477 - LTR16A1 LTR ERVL 0 457 226 356 250 176 0 chr4 9749512 9749648 -192578699 - MIR SINE MIR -72 190 31 1375 176 71 15 chr4 9749669 9749936 -192578411 - AluJo SINE Alu -30 282 1 534 123 0 0 chr4 9749946 9750019 -192578328 - Alu SINE Alu -14 297 225 316 319 88 38 chr4 9750216 9750454 -192577893 - MLT1K LTR MaLR -319 269 20 1091 108 0 13 chr4 9750585 9750742 -192577605 + AluSp/q SINE Alu 159 313 0 840 147 0 29 chr4 9750846 9750982 -192577365 + AluJo SINE Alu 2 133 -169 1340 184 157 0 chr4 9750987 9751248 -192577099 + AluSx SINE Alu 1 302 0 614 211 0 0 chr4 9751254 9751363 -192576984 + AluJo SINE Alu 141 249 -63 253 267 47 0 chr4 9751385 9751471 -192576876 - L1MC4 LINE L1 -1339 6703 6614 246 272 0 22 chr4 9751439 9751531 -192576816 + L1MC4 LINE L1 6614 6703 -1339 * 568 269 38 0 chr4 9751585 9751745 -192576602 + MER104 DNA Tc2 11 176 -4 2161 125 0 0 chr4 9752624 9752911 -192575436 + AluSx SINE Alu 1 287 -25 620 62 31 0 chr4 9752911 9753007 -192575340 + (TATAA)n Simple_repeat Simple_repeat 4 102 0 1762 189 0 22 chr4 9753145 9753463 -192574884 + AluJo SINE Alu 1 311 -1 207 322 69 0 chr4 9753532 9753619 -192574728 - MIR SINE MIR -74 188 96 1491 180 0 16 chr4 9753639 9753889 -192574458 + AluJb SINE Alu 1 246 -66 2385 160 48 14 chr4 9753889 9754326 -192574021 + MER66B LTR ERV1 1 452 -34 3976 112 67 71 chr4 9754327 9755720 -192572627 + pTR5 LTR ERV1 41 2438 0 315 172 0 47 chr4 9755745 9755809 -192572538 + AluJb SINE Alu 238 298 -4 2039 166 35 35 chr4 9755942 9756400 -192571947 + L1MB7 LINE L1 5670 6127 -57 1608 163 0 8 chr4 9756409 9756661 -192571686 - AluJb SINE Alu -27 285 36 329 140 18 0 chr4 9756761 9756818 -192571529 - AluS SINE Alu -240 60 3 303 146 0 0 chr4 9756964 9757019 -192571328 + (GGGA)n Simple_repeat Simple_repeat 3 57 0 2160 112 17 10 chr4 9757325 9757621 -192570726 - AluSg SINE Alu -12 298 1 1120 153 14 28 chr4 9757698 9757914 -192570433 + MER73 LTR ERVL 432 644 0 211 284 0 78 chr4 9758400 9758457 -192569890 - MER5B DNA MER1_type -81 97 50 932 150 0 0 chr4 9758457 9758590 -192569757 + FLAM_A SINE Alu 1 133 0 211 284 0 78 chr4 9758590 9758634 -192569713 - MER5B DNA MER1_type -128 50 4 235 191 88 44 chr4 9758648 9758716 -192569631 + MLT1F LTR MaLR 1 71 -471 * 344 216 0 0 chr4 9758713 9758787 -192569560 - MER66B LTR ERV1 -412 74 1 914 123 0 8 chr4 9759148 9759278 -192569069 + FLAM_C SINE Alu 1 129 -4 1877 141 3 49 chr4 9759463 9759642 -192568705 - AluSx SINE Alu -1 311 152 2412 87 0 3 chr4 9759642 9759942 -192568405 - AluY SINE Alu -12 299 1 1877 141 3 49 chr4 9759942 9760088 -192568259 - AluSx SINE Alu -160 152 1 474 241 16 88 chr4 9760814 9760950 -192567397 + MER5B DNA MER1_type 2 138 -51 1950 154 0 3 chr4 9760950 9761248 -192567099 - AluJo SINE Alu -13 299 3 474 241 16 88 chr4 9761248 9761297 -192567050 + MER5B DNA MER1_type 138 189 0 371 280 28 51 chr4 9761315 9761501 -192566846 - MER5A DNA MER1_type -6 172 2 1190 223 113 22 chr4 9761864 9761935 -192566412 + MLT1C LTR MaLR 6 69 -398 2066 151 3 0 chr4 9761935 9762233 -192566114 + AluSx SINE Alu 1 299 -13 1190 223 113 22 chr4 9762233 9762570 -192565777 + MLT1C LTR MaLR 69 451 -16 2285 111 0 0 chr4 9762624 9762921 -192565426 + AluSp SINE Alu 1 297 -16 1927 120 7 57 chr4 9763128 9763486 -192564861 + AluSq SINE Alu 1 343 0 257 182 0 0 chr4 9763669 9763713 -192564634 + AluJo SINE Alu 1 44 -258 3902 126 103 48 chr4 9763758 9764203 -192564144 + LTR1 LTR ERV1 1 505 -280 1797 87 0 4 chr4 9764203 9764432 -192563915 + AluY SINE Alu 16 243 -68 3902 126 103 48 chr4 9764432 9764730 -192563617 + LTR1 LTR ERV1 505 785 0 1508 166 0 66 chr4 9764732 9765021 -192563326 + AluJo SINE Alu 40 309 -3 1916 143 0 26 chr4 9765562 9765869 -192562478 + AluSx SINE Alu 1 299 -13 248 0 31 0 chr4 9765878 9765910 -192562437 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 355 43 0 0 chr4 9766203 9766295 -192562052 + AluSp/q SINE Alu 239 330 0 1768 142 32 11 chr4 9766375 9766656 -192561691 + AluSx SINE Alu 3 289 -23 2102 135 23 0 chr4 9767933 9768237 -192560110 + AluSx SINE Alu 1 311 -1 222 258 93 10 chr4 9768346 9768443 -192559904 + MIR SINE MIR 106 210 -52 248 290 29 22 chr4 9768652 9768790 -192559557 + L1MB3 LINE L1 6038 6176 -7 872 176 11 43 chr4 9773815 9774003 -192554344 - LTR5 LTR ERVK 0 969 788 2800 201 16 48 chr4 9774182 9774848 -192553499 - LTR5 LTR ERVK -324 645 1 244 326 23 6 chr4 9776257 9776429 -192551918 + L1MB3 LINE L1 6009 6183 0 317 230 0 30 chr4 9777335 9777435 -192550912 + (TAA)n Simple_repeat Simple_repeat 3 99 0 534 314 37 8 chr4 9778157 9778402 -192549945 + LTR16A LTR ERVL 199 450 0 2155 143 0 0 chr4 9778943 9779243 -192549104 - AluSc SINE Alu -9 300 1 856 151 0 146 chr4 9779642 9779841 -192548506 - AluSg/x SINE Alu -18 294 125 228 193 4 0 chr4 9780032 9780076 -192548271 - L2 LINE L2 -34 3277 3202 1872 174 3 0 chr4 9780148 9780442 -192547905 - AluSx SINE Alu -17 295 1 406 302 45 26 chr4 9780937 9781205 -192547142 + L1ME2 LINE L1 5706 5978 -186 874 142 43 21 chr4 9781206 9781347 -192547000 + AluSq/x SINE Alu 6 149 -163 1580 157 0 41 chr4 9781351 9781644 -192546703 + L1PA16 LINE L1 5884 6164 -2 3318 212 29 51 chr4 9781644 9781964 -192546383 + L1MA9 LINE L1 5323 5648 -664 326 74 19 0 chr4 9781964 9782018 -192546329 + (TA)n Simple_repeat Simple_repeat 1 55 0 3318 212 29 51 chr4 9782018 9782700 -192545647 + L1MA9 LINE L1 5648 6303 -9 497 311 68 27 chr4 9782755 9782977 -192545370 + MLT1J LTR MaLR 225 455 -56 22 35 0 0 chr4 9783247 9783276 -192545071 + AT_rich Low_complexity Low_complexity 1 29 0 187 224 184 13 chr4 9785450 9785526 -192542821 - L2 LINE L2 -5 3308 3220 234 62 0 0 chr4 9785852 9785884 -192542463 + (TG)n Simple_repeat Simple_repeat 1 32 0 236 287 189 25 chr4 9786213 9786340 -192542007 - MIR3 SINE MIR -67 141 6 25 51 0 0 chr4 9786534 9786573 -192541774 + AT_rich Low_complexity Low_complexity 1 39 0 355 323 31 57 chr4 9786877 9787069 -192541278 + MIR3 SINE MIR 5 191 -17 899 231 57 9 chr4 9787448 9787764 -192540583 + L1MA10 LINE L1 5987 6317 -17 2245 88 3 0 chr4 9788549 9788857 -192539490 + AluSx SINE Alu 1 309 0 2226 119 7 10 chr4 9789474 9789784 -192538563 - AluSx SINE Alu -2 310 2 1476 174 45 77 chr4 9789982 9790292 -192538055 + AluJo SINE Alu 1 300 -12 643 256 96 27 chr4 9790453 9790672 -192537675 + MIR SINE MIR 29 262 0 595 139 0 30 chr4 9790897 9790998 -192537349 - AluS SINE Alu -214 99 2 540 187 27 73 chr4 9791002 9791152 -192537195 - MLT1C LTR MaLR -284 183 41 1516 168 31 58 chr4 9791171 9791462 -192536885 - AluJo SINE Alu -11 301 19 21 36 0 0 chr4 9791673 9791701 -192536646 + AT_rich Low_complexity Low_complexity 1 28 0 2178 111 7 0 chr4 9792136 9792425 -192535922 + AluSc SINE Alu 1 291 -18 2178 106 3 10 chr4 9792519 9792821 -192535526 + AluSx SINE Alu 1 300 -12 313 302 103 9 chr4 9793925 9794041 -192534306 + L2 LINE L2 3184 3310 -3 206 104 42 83 chr4 9796239 9796287 -192532060 - MIR SINE MIR -85 177 132 869 248 65 0 chr4 9796308 9796522 -192531825 + MIR SINE MIR 13 240 -22 810 239 90 44 chr4 9796568 9797014 -192531333 - L2 LINE L2 -50 3263 2777 2174 128 0 0 chr4 9798449 9798746 -192529601 + AluSx SINE Alu 1 297 -15 287 274 212 28 chr4 9799649 9800007 -192528340 + LTR33A LTR ERVL 84 507 -16 2128 136 10 0 chr4 9800020 9800329 -192528018 - AluSx SINE Alu 0 312 1 709 183 32 8 chr4 9800855 9800981 -192527366 - FLAM_A SINE Alu -4 129 1 322 268 74 63 chr4 9801272 9801426 -192526921 + MIR SINE MIR 26 177 -68 2028 107 52 14 chr4 9801503 9801636 -192526711 + AluSx SINE Alu 1 128 -184 2056 157 0 0 chr4 9801636 9801936 -192526411 + AluSq SINE Alu 1 300 -13 2028 107 52 14 chr4 9801936 9802093 -192526254 + AluSx SINE Alu 128 302 -10 520 307 79 0 chr4 9802164 9802379 -192525968 - L1MD2 LINE L1 -365 5994 5763 256 190 6 20 chr4 9804152 9804226 -192524121 + MIR3 SINE MIR 81 154 -54 243 313 137 0 chr4 9804377 9804508 -192523839 - MIR SINE MIR -32 230 82 1993 139 3 19 chr4 9804785 9805101 -192523246 + AluJb SINE Alu 1 311 -1 1487 158 15 11 chr4 9805276 9805549 -192522798 + L1PA8A LINE L1 5858 6131 0 366 80 0 0 chr4 9805551 9805601 -192522746 + (CATA)n Simple_repeat Simple_repeat 4 53 0 384 206 10 21 chr4 9805821 9805918 -192522429 - L1M3 LINE L1 -432 5748 5653 443 300 71 73 chr4 9805918 9806258 -192522089 - L1M3 LINE L1 -766 5380 5042 245 380 8 4 chr4 9806404 9806638 -192521709 - L1M3 LINE L1 -1192 4954 4720 183 188 0 0 chr4 9806718 9806766 -192521581 + (CA)n Simple_repeat Simple_repeat 1 48 0 348 130 0 0 chr4 9809243 9809312 -192519035 + (CA)n Simple_repeat Simple_repeat 1 69 0 336 181 0 0 chr4 9811344 9811427 -192516920 + (CA)n Simple_repeat Simple_repeat 1 83 0 350 114 14 0 chr4 9813989 9814059 -192514288 + (CA)n Simple_repeat Simple_repeat 1 71 0 303 193 0 0 chr4 9816091 9816174 -192512173 + (CA)n Simple_repeat Simple_repeat 1 83 0 330 134 0 0 chr4 9818736 9818803 -192509544 + (CA)n Simple_repeat Simple_repeat 1 67 0 303 193 0 0 chr4 9820835 9820918 -192507429 + (CA)n Simple_repeat Simple_repeat 1 83 0 348 130 0 0 chr4 9823479 9823548 -192504799 + (CA)n Simple_repeat Simple_repeat 1 69 0 303 193 0 0 chr4 9825580 9825663 -192502684 + (CA)n Simple_repeat Simple_repeat 1 83 0 311 132 15 0 chr4 9828224 9828292 -192500055 + (CA)n Simple_repeat Simple_repeat 1 69 0 303 193 0 0 chr4 9830325 9830408 -192497939 + (CA)n Simple_repeat Simple_repeat 1 83 0 281 153 14 0 chr4 9832970 9833042 -192495305 + (CA)n Simple_repeat Simple_repeat 1 73 0 273 198 0 0 chr4 9835073 9835154 -192493193 + (CA)n Simple_repeat Simple_repeat 1 81 0 728 284 5 10 chr4 9887359 9887563 -192440784 + L1M3a LINE L1 66 268 -5687 5630 235 17 6 chr4 9887601 9889009 -192439338 - L1P LINE L1 -3253 2893 1470 872 183 34 13 chr4 9889109 9889344 -192439003 + L1MA7 LINE L1 6042 6281 -10 1293 265 6 3 chr4 9889369 9889701 -192438646 + L1MB7 LINE L1 5319 5651 -527 522 230 8 0 chr4 9889714 9889840 -192438507 + L1MB7 LINE L1 5763 5889 -295 706 167 109 23 chr4 9889872 9890046 -192438301 + MLT1F1 LTR MaLR 379 567 0 1618 93 0 22 chr4 9890156 9890381 -192437966 + AluY SINE Alu 35 254 -57 1882 127 65 9 chr4 9890558 9890880 -192437467 - L1MB1 LINE L1 -1 6167 5828 208 409 55 0 chr4 9890978 9891105 -192437242 + MIR3 SINE MIR 11 144 -64 5425 198 30 11 chr4 9891343 9892787 -192435560 + L1P4 LINE L1 4065 5529 -637 2934 120 9 2 chr4 9892887 9893354 -192434993 - L1P LINE L1 -3362 2784 2315 1099 127 18 0 chr4 9893354 9893520 -192434827 - AluSp SINE Alu -144 169 1 1916 218 65 28 chr4 9893603 9894180 -192434167 - L1MA9 LINE L1 -44 6268 5668 227 309 12 0 chr4 9894248 9894329 -192434018 - L1M4c LINE L1 -4585 1799 1718 1781 215 31 0 chr4 9894391 9894716 -192433631 + Tigger7 DNA MER2_type 7 341 -392 25 31 0 0 chr4 9894723 9894755 -192433592 + AT_rich Low_complexity Low_complexity 1 32 0 616 228 49 0 chr4 9894760 9894883 -192433464 + Tigger7 DNA MER2_type 2362 2490 -1 358 228 0 0 chr4 9894888 9894967 -192433380 - L1M4c LINE L1 -4885 1499 1421 3359 154 16 2 chr4 9895072 9895807 -192432540 - L1MA7 LINE L1 -444 5847 5099 3028 180 25 15 chr4 9895851 9896074 -192432273 + L1PA13 LINE L1 1408 1627 -5160 1643 143 110 24 chr4 9896074 9896409 -192431938 + THE1B LTR MaLR 1 364 0 3028 180 25 15 chr4 9896409 9896785 -192431562 + L1PA13 LINE L1 1627 2013 -4774 2348 83 3 3 chr4 9896784 9897096 -192431251 + L1PA5 LINE L1 5685 5996 -158 * 393 314 87 5 chr4 9897196 9897381 -192430966 + MLT1J LTR MaLR 260 459 -52 194 284 45 45 chr4 9897697 9897785 -192430562 + MER5B DNA MER1_type 87 174 -4 213 270 31 119 chr4 9897790 9897949 -192430398 - MIR3 SINE MIR -48 160 16 282 95 0 0 chr4 9898952 9898994 -192429353 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 2565 50 0 0 chr4 9901236 9901533 -192426814 - AluY SINE Alu -9 302 6 444 62 62 0 chr4 9901643 9901708 -192426639 - MER41A LTR ERV1 -88 466 398 473 213 0 46 chr4 9901832 9901940 -192426407 - MER20 DNA MER1_type -4 215 113 216 97 0 0 chr4 9901966 9901997 -192426350 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 689 301 52 43 chr4 9902527 9903089 -192425258 - L1M4 LINE L1 -2828 3816 3250 1090 335 53 60 chr4 9903092 9903616 -192424731 - L2 LINE L2 -256 3057 2542 1783 159 3 32 chr4 9903616 9903930 -192424417 + AluSq SINE Alu 1 305 -8 1090 335 53 60 chr4 9903930 9904225 -192424122 - L2 LINE L2 -771 2542 2246 307 242 23 62 chr4 9904685 9904813 -192423534 + L1ME4a LINE L1 5744 5866 -255 2011 146 7 0 chr4 9905336 9905645 -192422702 + AluSx SINE Alu 1 311 -1 2572 240 141 17 chr4 9906092 9907020 -192421327 - L1M4 LINE L1 -5498 1044 2 687 248 15 84 chr4 9907215 9907485 -192420862 + MLT1G1 LTR MaLR 2 210 -357 4928 187 25 32 chr4 9907492 9909309 -192419038 + L1PA15 LINE L1 4124 5916 -249 1931 116 0 0 chr4 9909309 9909567 -192418780 + AluY SINE Alu 39 296 -15 4928 187 25 32 chr4 9909567 9909816 -192418531 + L1PA15 LINE L1 5916 6165 0 634 231 54 16 chr4 9909877 9910063 -192418284 - L1M4 LINE L1 -1297 4849 4657 2433 64 0 26 chr4 9910613 9910926 -192417421 + AluY SINE Alu 1 305 -6 228 35 0 0 chr4 9910973 9911002 -192417345 + (A)n Simple_repeat Simple_repeat 1 29 0 193 300 0 0 chr4 9911771 9911821 -192416526 - MIR SINE MIR -67 141 92 21 57 0 0 chr4 9912079 9912114 -192416233 + AT_rich Low_complexity Low_complexity 1 35 0 212 324 20 29 chr4 9912477 9912579 -192415768 + MIR SINE MIR 45 145 -63 3012 180 25 4 chr4 9912807 9913367 -192414980 - L1PA16 LINE L1 -9 6157 5586 220 328 41 49 chr4 9913498 9913620 -192414727 - L2 LINE L2 -2 3270 3150 406 235 110 133 chr4 9914498 9914650 -192413697 - Charlie8 DNA MER1_type -1911 506 352 234 0 0 0 chr4 9914650 9914676 -192413671 + (TG)n Simple_repeat Simple_repeat 2 27 0 406 235 110 133 chr4 9914676 9914952 -192413395 - Charlie8 DNA MER1_type -2065 352 88 291 28 0 0 chr4 9914965 9915001 -192413346 + (CA)n Simple_repeat Simple_repeat 1 36 0 204 182 0 0 chr4 9915308 9915352 -192412995 + CT-rich Low_complexity Low_complexity 1 44 0 2047 142 0 3 chr4 9915443 9915745 -192412602 + AluSg SINE Alu 1 301 -9 1451 211 57 72 chr4 9916215 9916728 -192411619 - MLT1D LTR MaLR 0 505 1 5116 258 47 66 chr4 9917229 9918538 -192409809 + L1MB7 LINE L1 6 1272 -5577 2301 82 3 33 chr4 9918538 9918843 -192409504 + AluSp SINE Alu 13 308 -5 5116 258 47 66 chr4 9918843 9919340 -192409007 + L1MB7 LINE L1 1272 1777 -5072 498 187 0 9 chr4 9919343 9919450 -192408897 + L1MB7 LINE L1 1917 2022 -4827 2008 170 26 1 chr4 9919466 9919876 -192408471 + L1MB7 LINE L1 5700 6115 -755 * 2346 335 68 15 chr4 9919875 9920863 -192407484 + L1PBa LINE L1 6 1045 -5818 3215 164 88 87 chr4 9920878 9921868 -192406479 - LTR12 LTR ERV1 -134 1481 3 294 263 0 0 chr4 9921872 9921948 -192406399 + L1PBa LINE L1 1088 1163 -5700 2269 205 78 23 chr4 9921969 9922570 -192405777 + L1MB7 LINE L1 6253 6886 0 1530 174 39 48 chr4 9923075 9923386 -192404961 + AluJb SINE Alu 1 308 -4 26 0 0 0 chr4 9923908 9923934 -192404413 + AT_rich Low_complexity Low_complexity 1 26 0 1521 193 109 3 chr4 9923969 9924324 -192404023 - L1MB7 LINE L1 -1 6168 5785 308 222 51 0 chr4 9924313 9924400 -192403947 + L1MB7 LINE L1 6085 6175 -3 * 4086 230 16 9 chr4 9924655 9925687 -192402660 - L1 LINE L1 -2775 3371 2333 1604 221 19 55 chr4 9925688 9926102 -192402245 - MLT1B LTR MaLR 0 426 2 1899 202 59 51 chr4 9926102 9926641 -192401706 + L1MCa LINE L1 1086 1734 -4692 1577 130 107 4 chr4 9926641 9926903 -192401444 - AluSx SINE Alu -23 289 1 1899 202 59 51 chr4 9926903 9927007 -192401340 + L1MCa LINE L1 1734 1836 -4590 4825 208 16 10 chr4 9927009 9928064 -192400283 + L1 LINE L1 4031 5091 -1055 559 304 146 14 chr4 9928228 9928653 -192399694 + L2 LINE L2 1351 1831 -1483 1431 219 121 38 chr4 9929176 9929974 -192398373 - SATR1 Satellite Satellite -5 864 1 275 178 8 59 chr4 9930152 9930270 -192398077 + (TTA)n Simple_repeat Simple_repeat 1 112 0 27943 107 13 11 chr4 9930325 9934374 -192393973 + HERVE LTR ERV1 1110 5165 -2648 2049 198 103 11 chr4 9934374 9936457 -192391890 - SATR1 Satellite Satellite 0 2274 1 851 225 283 6 chr4 9936487 9936816 -192391531 - SATR1 Satellite Satellite -3 467 48 1386 117 27 31 chr4 9936820 9937043 -192391304 - AluSq SINE Alu -91 222 1 738 223 46 0 chr4 9938935 9939132 -192389215 + MER6B DNA MER2_type 5 210 0 340 207 37 0 chr4 9939237 9939319 -192389028 - MER5B DNA MER1_type -6 172 88 1924 146 0 46 chr4 9939530 9939858 -192388489 - AluSp SINE Alu 0 313 1 1254 223 3 73 chr4 9940044 9940227 -192388120 + L1MA4 LINE L1 5767 5910 -390 1679 164 0 4 chr4 9940227 9940508 -192387839 + AluSx SINE Alu 1 280 -32 1254 223 3 73 chr4 9940508 9940709 -192387638 + L1MA4 LINE L1 5910 6124 -176 2291 96 3 3 chr4 9940795 9941108 -192387239 - AluSp SINE Alu 0 313 1 1862 257 30 9 chr4 9941151 9942147 -192386200 + L1MB3 LINE L1 4814 5831 -352 1828 147 3 20 chr4 9942147 9942447 -192385900 + AluSx SINE Alu 1 295 -17 1738 219 100 23 chr4 9942564 9943363 -192384984 - SATR1 Satellite Satellite -20 860 1 226 205 17 43 chr4 9943422 9943539 -192384808 + (TTA)n Simple_repeat Simple_repeat 1 114 0 311 261 13 26 chr4 9943569 9943722 -192384625 + (TTA)n Simple_repeat Simple_repeat 1 151 0 2105 203 117 9 chr4 9943731 9945844 -192382503 - SATR1 Satellite Satellite -1 2342 1 26415 107 12 13 chr4 9946198 9950040 -192378307 + HERVE LTR ERV1 1108 4945 -2868 1882 185 104 31 chr4 9950046 9950819 -192377528 - SATR1 Satellite Satellite 0 828 1 790 234 280 3 chr4 9950849 9951178 -192377169 - SATR1 Satellite Satellite -3 467 48 1387 128 27 14 chr4 9951182 9951401 -192376946 - AluSq SINE Alu -91 222 1 678 234 46 0 chr4 9953292 9953489 -192374858 + MER6B DNA MER2_type 5 210 0 303 246 97 9 chr4 9953592 9953706 -192374641 - MER5B DNA MER1_type -5 173 50 2015 130 0 40 chr4 9953890 9954214 -192374133 - AluSp SINE Alu -2 311 1 287 322 70 0 chr4 9954219 9954362 -192373985 - HsTC2 DNA Tc2 -113 1785 1633 1231 233 3 72 chr4 9954400 9954583 -192373764 + L1MA4 LINE L1 5767 5910 -390 1627 178 0 4 chr4 9954583 9954864 -192373483 + AluSx SINE Alu 1 280 -32 1231 233 3 72 chr4 9954864 9955071 -192373276 + L1MA4 LINE L1 5910 6130 -170 2126 105 16 3 chr4 9955150 9955454 -192372893 - AluSp SINE Alu -5 308 1 1878 243 25 0 chr4 9955499 9956493 -192371854 + L1MA7 LINE L1 4818 5781 -402 1899 140 3 20 chr4 9956493 9956793 -192371554 + AluSx SINE Alu 1 295 -17 1878 243 25 0 chr4 9956793 9956931 -192371416 + L1MA7 LINE L1 5781 5913 -270 1947 123 35 3 chr4 9956931 9957216 -192371131 + AluSx SINE Alu 2 295 -17 1878 243 25 0 chr4 9957216 9957468 -192370879 + L1MA7 LINE L1 5913 6153 -30 29 0 0 0 chr4 9957488 9957517 -192370830 + AT_rich Low_complexity Low_complexity 1 29 0 3197 213 15 74 chr4 9957979 9959009 -192369338 + LTR5 LTR ERVK 1 969 0 369 346 47 14 chr4 9959334 9959548 -192368799 - MIR SINE MIR -10 252 32 2078 118 0 43 chr4 9959942 9960265 -192368082 + AluSg SINE Alu 1 309 -1 364 202 20 10 chr4 9961389 9961488 -192366859 + L1M4 LINE L1 4623 4722 -1424 297 0 0 0 chr4 9961495 9961528 -192366819 + (TA)n Simple_repeat Simple_repeat 1 33 0 338 284 79 22 chr4 9961530 9961759 -192366588 - L1M4 LINE L1 -3189 2957 2716 430 238 163 44 chr4 9961911 9962293 -192366054 - MLT1J2 LTR MaLR -2 448 1 310 331 31 8 chr4 9962301 9962431 -192365916 - L1M4 LINE L1 -3594 2552 2420 216 315 112 11 chr4 9962507 9962596 -192365751 - MIR3 SINE MIR -54 154 57 4783 124 308 91 chr4 9962707 9964100 -192364247 - pTR5 LTR ERV1 0 2438 743 407 295 248 15 chr4 9965390 9966016 -192362331 + L2 LINE L2 2243 3028 -244 2131 141 7 7 chr4 9966077 9966383 -192361964 - AluSq SINE Alu -7 306 1 311 271 14 17 chr4 9966698 9966800 -192361547 - MER5A DNA MER1_type 0 189 79 * 442 288 169 0 chr4 9966792 9966952 -192361395 + L2 LINE L2 2519 2705 -609 1385 181 36 12 chr4 9966953 9967202 -192361145 - AluJo SINE Alu -16 296 42 378 108 0 0 chr4 9967271 9967336 -192361011 + (TC)n Simple_repeat Simple_repeat 2 66 0 2521 70 3 0 chr4 9967982 9968283 -192360064 + AluY SINE Alu 1 302 -9 2126 136 3 3 chr4 9968519 9968828 -192359519 - AluSc SINE Alu 0 309 1 202 333 17 0 chr4 9969090 9969150 -192359197 + MIR SINE MIR 15 75 -187 2629 239 34 8 chr4 9969155 9969771 -192358576 - ERVL LTR ERVL -3615 2149 1518 466 268 16 0 chr4 9969787 9969910 -192358437 + MIR SINE MIR 99 223 -39 212 319 88 0 chr4 9970000 9970113 -192358234 - L2 LINE L2 -13 3300 3178 328 296 104 70 chr4 9970589 9971032 -192357315 + L2 LINE L2 2804 3261 -11 608 294 16 36 chr4 9973147 9973395 -192354952 + MIR SINE MIR 8 250 -12 1713 175 7 7 chr4 9973478 9973770 -192354577 + AluJb SINE Alu 1 292 -20 637 204 39 100 chr4 9975077 9975308 -192353039 - MER20 DNA MER1_type -2 217 1 383 315 54 22 chr4 9975337 9975521 -192352826 + MIR SINE MIR 41 230 -32 2167 134 3 0 chr4 9975524 9975830 -192352517 - AluSx SINE Alu -5 307 1 242 365 69 0 chr4 9976935 9977138 -192351209 - L2 LINE L2 -943 2371 2155 1471 124 45 0 chr4 9977166 9977368 -192350979 - AluSx SINE Alu -96 216 6 25 31 0 0 chr4 9977378 9977410 -192350937 + AT_rich Low_complexity Low_complexity 1 32 0 219 164 55 0 chr4 9977544 9977599 -192350748 + A-rich Low_complexity Low_complexity 2 59 0 1214 225 23 43 chr4 9977599 9977695 -192350652 + L1MB3 LINE L1 5814 5910 -273 1858 141 35 0 chr4 9977695 9977978 -192350369 + AluSx SINE Alu 3 295 -17 1214 225 23 43 chr4 9977978 9978228 -192350119 + L1MB3 LINE L1 5910 6153 -30 31 0 0 0 chr4 9978248 9978279 -192350068 + AT_rich Low_complexity Low_complexity 1 31 0 3678 206 17 59 chr4 9978737 9979749 -192348598 + LTR5 LTR ERVK 1 969 0 290 379 47 14 chr4 9980075 9980289 -192348058 - MIR SINE MIR -10 252 32 2114 128 0 6 chr4 9980683 9980995 -192347352 + AluSg SINE Alu 1 310 0 224 259 59 52 chr4 9981360 9981495 -192346852 + L2 LINE L2 3137 3272 0 2154 122 0 3 chr4 9981553 9981857 -192346490 - AluY SINE Alu -8 303 1 204 40 0 0 chr4 9983007 9983032 -192345315 + (T)n Simple_repeat Simple_repeat 1 25 0 1003 233 213 44 chr4 9983594 9985003 -192343344 - SATR1 Satellite Satellite -1 1646 1 913 249 255 27 chr4 9985040 9986443 -192341904 - SATR1 Satellite Satellite -94 1722 1 568 241 95 75 chr4 9986546 9986974 -192341373 - SATR1 Satellite Satellite -24 436 1 22 0 0 0 chr4 9987223 9987245 -192341102 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 9987307 9987330 -192341017 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 9988492 9988515 -192339832 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 9988577 9988600 -192339747 + GC_rich Low_complexity Low_complexity 1 23 0 1234 258 106 23 chr4 9988711 9989492 -192338855 - SATR1 Satellite Satellite -3 845 1 21 36 0 0 chr4 9989538 9989566 -192338781 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 9989584 9989610 -192338737 + AT_rich Low_complexity Low_complexity 1 26 0 208 229 7 57 chr4 9989675 9989815 -192338532 + (TTA)n Simple_repeat Simple_repeat 1 133 0 27254 106 12 11 chr4 9989843 9993898 -192334449 + HERVE LTR ERV1 1108 5165 -2648 1897 186 115 34 chr4 9993898 9996414 -192331933 - SATR1 Satellite Satellite -144 2718 1 1384 121 27 31 chr4 9996418 9996641 -192331706 - AluSq SINE Alu -91 222 1 625 223 51 5 chr4 9998533 9998730 -192329617 + MER6B DNA MER2_type 5 210 0 421 200 73 80 chr4 9998833 9998983 -192329364 - MER5B DNA MER1_type -5 173 25 2090 128 0 46 chr4 9999126 9999454 -192328893 - AluSp SINE Alu 0 313 1 249 315 70 0 chr4 9999459 9999602 -192328745 - HsTC2 DNA Tc2 -113 1785 1633 1242 246 2 60 chr4 9999640 9999823 -192328524 + L1MA4 LINE L1 5767 5959 -341 1654 183 0 3 chr4 9999823 10000107 -192328240 + AluSx SINE Alu 1 283 -29 1242 246 2 60 chr4 10000107 10000341 -192328006 + L1MA4 LINE L1 5959 6160 -140 2083 128 3 3 chr4 10000391 10000695 -192327652 - AluSp SINE Alu -9 304 1 2804 238 23 51 chr4 10000738 10001734 -192326613 + L1MB3 LINE L1 4814 5837 -346 1833 151 3 28 chr4 10001734 10002053 -192326294 + AluSx SINE Alu 1 311 -1 2804 238 23 51 chr4 10002053 10002181 -192326166 + L1MB3 LINE L1 5837 5967 -216 1760 149 40 0 chr4 10002181 10002456 -192325891 + AluSx SINE Alu 10 295 -17 2804 238 23 51 chr4 10002456 10002708 -192325639 + L1MB3 LINE L1 5967 6153 -30 24 32 0 0 chr4 10002728 10002759 -192325588 + AT_rich Low_complexity Low_complexity 1 31 0 3110 229 17 62 chr4 10003216 10004231 -192324116 + LTR5 LTR ERVK 1 969 0 1763 209 107 37 chr4 10004501 10005663 -192322684 - SATR1 Satellite Satellite -20 1243 1 372 250 12 29 chr4 10005785 10005957 -192322390 + (TTA)n Simple_repeat Simple_repeat 1 169 0 35 24 0 0 chr4 10006009 10006051 -192322296 + AT_rich Low_complexity Low_complexity 1 42 0 1973 221 103 12 chr4 10006051 10007127 -192321220 - SATR1 Satellite Satellite -52 1174 1 1847 114 33 13 chr4 10009854 10010153 -192318194 + AluSq SINE Alu 1 305 -8 1940 139 0 13 chr4 10010177 10010493 -192317854 + AluSx SINE Alu 1 312 0 1572 130 32 0 chr4 10010503 10010750 -192317597 + AluJo SINE Alu 1 255 -57 248 303 15 0 chr4 10010835 10010901 -192317446 - MER112 DNA MER1_type -175 85 19 2282 102 0 6 chr4 10014068 10014383 -192313964 - AluSq SINE Alu 0 313 1 629 237 28 90 chr4 10014450 10014540 -192313807 + L1MEd LINE L1 23 117 -6002 2045 108 11 0 chr4 10014540 10014826 -192313521 + AluSq SINE Alu 1 289 -24 243 0 0 0 chr4 10014831 10014858 -192313489 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 629 237 28 90 chr4 10014858 10014972 -192313375 + L1MEd LINE L1 121 220 -5899 1107 267 58 47 chr4 10015033 10015270 -192313077 + L1MEd LINE L1 329 575 -5544 2003 111 17 3 chr4 10015270 10015559 -192312788 + AluSq SINE Alu 1 293 -20 1107 267 58 47 chr4 10015559 10015766 -192312581 + L1MEd LINE L1 575 778 -5341 382 285 0 24 chr4 10015813 10015936 -192312411 + MLT1E LTR MaLR 1 120 -473 508 28 14 14 chr4 10015938 10016009 -192312338 + (TTTTA)n Simple_repeat Simple_repeat 3 73 0 585 259 0 0 chr4 10016009 10016125 -192312222 - FLAM_C SINE Alu -26 117 2 2163 83 21 0 chr4 10016135 10016424 -192311923 - AluSx SINE Alu -17 295 1 276 235 128 5 chr4 10016432 10016591 -192311756 + MLT1E3 LTR MaLR 12 262 -392 303 218 110 0 chr4 10016644 10016737 -192311610 + MLT1E3 LTR MaLR 290 397 -227 363 216 117 47 chr4 10016741 10016912 -192311435 - SATR1 Satellite Satellite -131 339 157 1854 138 7 13 chr4 10017201 10017505 -192310842 + AluSx SINE Alu 3 304 -8 25 0 0 0 chr4 10017515 10017540 -192310807 + AT_rich Low_complexity Low_complexity 1 25 0 2578 121 54 64 chr4 10017575 10017917 -192310430 - L1MA8 LINE L1 -3 6288 5951 1793 161 10 3 chr4 10017917 10018227 -192310120 - AluJo SINE Alu 0 312 1 2578 121 54 64 chr4 10018227 10018403 -192309944 - L1MA8 LINE L1 -340 5951 5775 1073 202 14 23 chr4 10018792 10019010 -192309337 + MER58A DNA MER1_type 9 224 0 2026 137 13 0 chr4 10019952 10020258 -192308089 + AluSx SINE Alu 1 310 -2 344 273 65 65 chr4 10020440 10020594 -192307753 + MIR SINE MIR 101 254 -8 659 203 6 55 chr4 10021132 10021314 -192307033 - MER53 DNA DNA -3 186 14 2126 111 13 7 chr4 10022025 10022332 -192306015 - AluSq SINE Alu -4 309 1 267 200 67 32 chr4 10022675 10022796 -192305551 + L2 LINE L2 2921 3047 -266 338 288 136 0 chr4 10023026 10023151 -192305196 - MIR SINE MIR -115 147 6 1341 146 36 0 chr4 10024454 10024673 -192303674 + AluSg SINE Alu 1 227 -83 446 178 10 30 chr4 10024752 10024853 -192303494 + AluSg SINE Alu 207 305 -4 2183 67 14 0 chr4 10024941 10025224 -192303123 - L1PA8 LINE L1 0 6172 5886 262 378 27 5 chr4 10025404 10025589 -192302758 - L1MC/D LINE L1 -2009 5799 5611 573 237 0 0 chr4 10025832 10026069 -192302278 + (TCCA)n Simple_repeat Simple_repeat 1 237 0 198 312 0 65 chr4 10026083 10026160 -192302187 - L2 LINE L2 -1 3312 3241 * 551 261 92 11 chr4 10026142 10026326 -192302021 + MIR SINE MIR 12 210 -52 181 368 43 17 chr4 10026451 10026568 -192301779 - L2 LINE L2 -163 3109 2990 1886 141 3 0 chr4 10026995 10027286 -192301061 + AluSx SINE Alu 11 302 -10 248 261 167 3 chr4 10027643 10027754 -192300593 + MIR3 SINE MIR 32 159 -49 215 176 20 59 chr4 10027857 10027908 -192300439 + MER5A DNA MER1_type 119 167 -22 187 114 86 0 chr4 10027877 10027912 -192300435 - MER5B DNA MER1_type -124 54 17 * 1627 162 22 11 chr4 10028202 10028504 -192299843 - AluJb SINE Alu 0 305 1 360 235 125 61 chr4 10028506 10028881 -192299466 - L1MC5 LINE L1 -28 7933 7535 1962 119 14 7 chr4 10028950 10029243 -192299104 + AluSc SINE Alu 1 295 -14 359 241 63 57 chr4 10029538 10029696 -192298651 - MER5B DNA MER1_type -3 175 17 187 366 14 0 chr4 10029784 10029855 -192298492 + L2 LINE L2 3106 3177 -95 1941 131 3 17 chr4 10030243 10030541 -192297806 + AluSx SINE Alu 1 294 -18 1727 136 4 4 chr4 10031132 10031396 -192296951 + AluSx SINE Alu 1 264 -48 786 195 168 27 chr4 10031468 10031802 -192296545 - HAL1b LINE L1 -28 1320 940 946 269 117 11 chr4 10032305 10032759 -192295588 - HAL1b LINE L1 -415 933 432 2211 92 0 16 chr4 10032766 10033081 -192295266 - AluY SINE Alu -1 310 1 241 293 49 0 chr4 10033353 10033435 -192294912 - L2 LINE L2 -220 3052 2967 1214 194 24 81 chr4 10033452 10033909 -192294438 + MLT2B1 LTR ERVL 5 414 0 565 89 0 0 chr4 10034486 10034565 -192293782 + MADE1 DNA Mariner 2 80 0 656 360 13 10 chr4 10035912 10036215 -192292132 + MLT1I LTR MaLR 103 406 -3 317 61 0 20 chr4 10036229 10036278 -192292069 + (TG)n Simple_repeat Simple_repeat 1 48 0 21 0 0 0 chr4 10036347 10036368 -192291979 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4 10037297 10037317 -192291030 + (A)n Simple_repeat Simple_repeat 1 20 0 318 243 111 86 chr4 10037386 10037441 -192290906 + L1ME3A LINE L1 5874 5926 -244 751 234 18 31 chr4 10037441 10037663 -192290684 - MER20 DNA MER1_type 0 219 1 318 243 111 86 chr4 10037663 10037809 -192290538 + L1ME3A LINE L1 5926 6086 -84 1643 150 0 39 chr4 10037809 10038141 -192290206 - AluJb SINE Alu 0 312 1 318 243 111 86 chr4 10038141 10038218 -192290129 + L1ME3A LINE L1 6086 6160 -10 2006 139 7 0 chr4 10038577 10038872 -192289475 - AluSx SINE Alu -15 297 1 1055 147 0 0 chr4 10039013 10039176 -192289171 + AluSg/x SINE Alu 128 290 -20 1697 176 9 11 chr4 10039830 10039993 -192288354 - L1M4 LINE L1 -521 5653 5494 2064 116 0 7 chr4 10039993 10040295 -192288052 - AluSx SINE Alu -12 300 1 1697 176 9 11 chr4 10040295 10040459 -192287888 - L1M4 LINE L1 -680 5494 5331 944 274 133 33 chr4 10040459 10040879 -192287468 + L1ME1 LINE L1 5652 6113 -53 833 169 0 0 chr4 10040952 10041088 -192287259 + FLAM_C SINE Alu 2 137 -6 1048 93 0 0 chr4 10041092 10041231 -192287116 + AluSx SINE Alu 1 139 -174 1179 125 16 0 chr4 10042100 10042284 -192286063 + AluSx SINE Alu 121 307 -5 837 151 0 20 chr4 10042290 10042436 -192285911 + FRAM SINE Alu 4 146 -30 387 127 0 0 chr4 10042440 10042503 -192285844 + (CA)n Simple_repeat Simple_repeat 2 64 0 187 314 0 0 chr4 10042504 10042555 -192285792 - MER5A DNA MER1_type -53 136 86 263 227 174 38 chr4 10042681 10042813 -192285534 - MIR SINE MIR -20 242 93 2679 152 13 20 chr4 10042813 10043261 -192285086 - L1MA7 LINE L1 -232 6059 5615 997 167 88 0 chr4 10043256 10043472 -192284875 + L1MA7 LINE L1 6051 6285 -6 * 210 247 34 79 chr4 10043490 10043579 -192284768 - MIR SINE MIR -156 106 22 269 226 19 142 chr4 10044416 10044522 -192283825 - L2 LINE L2 -7 3265 3173 2910 206 21 77 chr4 10045396 10046422 -192281925 - LTR5 LTR ERVK 0 969 1 1098 185 0 0 chr4 10046424 10046602 -192281745 - HERVK LTR ERVK -2 7241 7064 379 273 13 26 chr4 10046687 10046841 -192281506 + CT-rich Low_complexity Low_complexity 1 152 0 2600 102 11 0 chr4 10046943 10047307 -192281040 - HERVK LTR ERVK -1720 5523 5156 1020 132 29 0 chr4 10047709 10047883 -192280464 - L1MA4 LINE L1 -12 6288 6110 5399 168 35 2 chr4 10047891 10049042 -192279305 + L1PB1 LINE L1 4295 5523 -628 2142 116 0 0 chr4 10049042 10049352 -192278995 + AluSg SINE Alu 1 310 0 5399 168 35 2 chr4 10049352 10050003 -192278344 + L1PB1 LINE L1 5523 6151 0 777 164 120 4 chr4 10050006 10050227 -192278120 - L1MA4 LINE L1 -172 6132 5880 3648 133 14 0 chr4 10050274 10050859 -192277488 - L1MA4A LINE L1 -376 5927 5335 1230 180 4 4 chr4 10050848 10051093 -192277254 - L1P LINE L1 -942 5204 4960 * 9882 212 24 41 chr4 10051094 10051541 -192276806 - L1 LINE L1 -940 5908 5455 243 0 0 0 chr4 10051541 10051568 -192276779 + (TA)n Simple_repeat Simple_repeat 2 28 0 1877 117 0 51 chr4 10051568 10051884 -192276463 - AluY SINE Alu -11 300 1 9882 212 24 41 chr4 10051884 10052368 -192275979 - L1 LINE L1 -1392 5456 4965 431 95 0 40 chr4 10052368 10052442 -192275905 - AluSq SINE Alu -1 311 241 1123 127 30 0 chr4 10052443 10052608 -192275739 - AluSq SINE Alu -143 170 1 9882 212 24 41 chr4 10052608 10054800 -192273547 - L1 LINE L1 -1883 4965 2737 2100 139 51 20 chr4 10054800 10055153 -192273194 + THE1B LTR MaLR 1 364 0 11037 111 16 11 chr4 10055153 10056725 -192271622 + THE1B-int LTR MaLR 1 1580 0 2150 128 48 31 chr4 10056725 10057083 -192271264 + THE1B LTR MaLR 1 364 0 9882 212 24 41 chr4 10057083 10057333 -192271014 - L1 LINE L1 -4108 2740 2521 183 42 0 0 chr4 10057334 10057358 -192270989 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 834 189 0 0 chr4 10057361 10057504 -192270843 - FRAM SINE Alu -33 143 1 5888 214 63 16 chr4 10057504 10058555 -192269792 - L1 LINE L1 -4327 2522 1196 1954 126 4 0 chr4 10058555 10058864 -192269483 - AluSg SINE Alu 0 310 1 5888 214 63 16 chr4 10058864 10059276 -192269071 - L1 LINE L1 -5653 1196 805 847 275 14 5 chr4 10059493 10059711 -192268636 - MER58A DNA MER1_type -1 223 4 1344 218 7 4 chr4 10059825 10060100 -192268247 + AluJo SINE Alu 1 276 -36 438 167 39 98 chr4 10060302 10060404 -192267943 - MLT1H LTR MaLR 0 549 454 * 726 257 112 51 chr4 10060402 10060733 -192267614 - MLT1H LTR MaLR -198 351 1 207 139 0 0 chr4 10061430 10061466 -192266881 + (T)n Simple_repeat Simple_repeat 1 36 0 1909 123 10 7 chr4 10061667 10061968 -192266379 + AluSc SINE Alu 1 302 -7 645 248 39 9 chr4 10062237 10062467 -192265880 + Charlie5 DNA MER1_type 2334 2570 -42 1939 179 43 0 chr4 10062636 10063005 -192265342 + L1MB7 LINE L1 5575 5959 -219 1119 104 75 0 chr4 10063005 10063178 -192265169 + AluSg/x SINE Alu 102 287 -23 975 206 34 0 chr4 10063181 10063385 -192264962 + L1MB7 LINE L1 5974 6184 0 404 302 43 71 chr4 10063385 10063537 -192264810 - L2 LINE L2 -221 3051 2907 1950 141 0 0 chr4 10063537 10063835 -192264512 - AluSq SINE Alu -15 298 1 404 302 43 71 chr4 10063835 10063937 -192264410 - L2 LINE L2 -365 2907 2804 208 300 0 0 chr4 10063978 10064038 -192264309 + MIR SINE MIR 89 148 -60 2211 59 16 7 chr4 10064093 10064396 -192263951 - AluY SINE Alu -5 306 1 549 281 55 33 chr4 10064436 10064710 -192263637 - L2 LINE L2 -577 2737 2458 2035 123 0 3 chr4 10065467 10065768 -192262579 - AluSc SINE Alu -9 300 1 1356 148 19 5 chr4 10065886 10066102 -192262245 + AluSx SINE Alu 2 220 -92 373 211 39 29 chr4 10066359 10066463 -192261884 - L1M4 LINE L1 -391 5793 5689 * 1158 194 25 60 chr4 10066438 10066721 -192261626 + L1MB5 LINE L1 5902 6174 0 1937 150 0 0 chr4 10066725 10067025 -192261322 + AluSx SINE Alu 2 301 -11 618 198 8 24 chr4 10067040 10067166 -192261181 - MER5B DNA MER1_type -50 128 5 264 324 22 55 chr4 10067253 10067435 -192260912 + MER5A DNA MER1_type 3 178 -11 2068 122 16 0 chr4 10067528 10067832 -192260515 + AluSx SINE Alu 1 309 -3 1962 201 128 11 chr4 10068119 10068571 -192259776 - MLT1E LTR MaLR 0 593 89 7889 45 0 0 chr4 10068571 10069543 -192258804 - L1P LINE L1 -896 5250 4279 629 163 16 16 chr4 10069571 10069694 -192258653 + LTR2B LTR ERV1 272 394 -96 1109 112 0 25 chr4 10069699 10069860 -192258487 - AluSc SINE Alu -152 157 1 1567 207 207 51 chr4 10070005 10070571 -192257776 + MLT1E1 LTR MaLR 1 654 0 2061 111 0 16 chr4 10070582 10070888 -192257459 + AluSc SINE Alu 1 301 -8 229 360 41 18 chr4 10070943 10071090 -192257257 - MIR3 SINE MIR -54 154 46 2093 102 0 0 chr4 10071263 10071547 -192256800 + AluSc SINE Alu 1 284 -25 449 321 6 37 chr4 10071614 10071776 -192256571 - MIR SINE MIR -105 157 1 1882 140 3 3 chr4 10071827 10072120 -192256227 + AluSx SINE Alu 1 293 -19 714 257 43 77 chr4 10072284 10072540 -192255807 + MLT1I LTR MaLR 87 331 -78 1835 143 24 3 chr4 10072540 10072833 -192255514 + AluSx SINE Alu 1 299 -13 714 257 43 77 chr4 10072833 10072903 -192255444 + MLT1I LTR MaLR 331 402 -7 494 288 7 22 chr4 10073251 10073390 -192254957 - L2 LINE L2 0 3272 3136 6176 62 140 59 chr4 10073417 10074498 -192253849 - MER11A LTR ERVK 0 1266 1 890 307 98 43 chr4 10074507 10075199 -192253148 - L2 LINE L2 -212 3101 2345 1524 159 0 55 chr4 10075199 10075508 -192252839 - AluJo SINE Alu -20 292 1 890 307 98 43 chr4 10075508 10075742 -192252605 - L2 LINE L2 -968 2345 2125 210 362 17 75 chr4 10076376 10076550 -192251797 + L3 LINE CR1 1033 1196 -381 871 126 0 0 chr4 10076572 10076699 -192251648 + AluSq/x SINE Alu 9 135 -178 1991 135 10 3 chr4 10076699 10077002 -192251345 + AluSq SINE Alu 1 305 -8 1176 182 4 48 chr4 10077042 10077159 -192251188 + MER58A DNA MER1_type 1 105 -2315 2109 151 135 0 chr4 10077159 10077536 -192250811 - MSTA LTR MaLR 0 428 1 1176 182 4 48 chr4 10077536 10077649 -192250698 + MER58A DNA MER1_type 105 221 -3 208 175 25 0 chr4 10077659 10077699 -192250648 + GA-rich Low_complexity Low_complexity 3 43 0 227 316 96 7 chr4 10077703 10077839 -192250508 + L3 LINE CR1 1230 1377 -200 4306 84 2 2 chr4 10077846 10078404 -192249943 + LTR6B LTR ERV1 1 558 0 21949 138 21 6 chr4 10078406 10081592 -192246755 + HERVS71 LTR ERV1 4 3236 -5742 13913 143 18 0 chr4 10081601 10084410 -192243937 + HERVS71 LTR ERV1 4870 7795 -1183 2180 105 13 3 chr4 10084399 10084712 -192243635 + HERVS71 LTR ERV1 8594 8909 -69 * 4355 62 16 0 chr4 10084712 10085261 -192243086 + LTR6B LTR ERV1 1 558 0 2140 86 7 0 chr4 10085516 10085808 -192242539 - AluSp SINE Alu -14 299 6 288 257 110 58 chr4 10086426 10086667 -192241680 - MLT1H LTR MaLR 0 595 248 1851 100 17 79 chr4 10086794 10087154 -192241193 - MER4A LTR ERV1 -6 658 263 446 121 0 15 chr4 10087154 10087220 -192241127 - MER4A LTR ERV1 -566 98 34 1628 126 0 33 chr4 10087221 10087492 -192240855 - AluSx SINE Alu -22 290 29 610 78 0 0 chr4 10087492 10087569 -192240778 - AluS SINE Alu -235 78 2 309 116 0 0 chr4 10087570 10087613 -192240734 - MER4A LTR ERV1 -620 44 2 442 270 110 6 chr4 10087613 10087776 -192240571 - MLT1H LTR MaLR -356 193 14 279 0 0 0 chr4 10087781 10087812 -192240535 + (CA)n Simple_repeat Simple_repeat 1 31 0 1761 87 146 0 chr4 10088093 10088347 -192240000 - AluSg SINE Alu -5 295 5 380 260 47 89 chr4 10088541 10088799 -192239548 + MLT1K LTR MaLR 180 426 -162 1802 146 30 0 chr4 10088922 10089223 -192239124 + AluSg SINE Alu 1 310 0 1134 299 23 0 chr4 10089225 10089529 -192238818 + LTR16C LTR ERVL 164 474 -17 585 122 0 5 chr4 10090040 10090230 -192238117 + AluSx SINE Alu 2 276 -36 595 188 70 26 chr4 10091012 10091168 -192237179 - MLT1I LTR MaLR -7 424 267 241 284 95 24 chr4 10091382 10091532 -192236815 - MIR SINE MIR -45 163 3 331 240 11 42 chr4 10091916 10092038 -192236309 - MER58 DNA MER1_type 0 2420 102 1474 200 37 31 chr4 10092047 10092397 -192235950 + L1MB5 LINE L1 5813 6164 -20 1329 220 14 0 chr4 10092397 10092692 -192235655 - AluJo SINE Alu -12 300 2 1823 133 3 42 chr4 10092861 10093170 -192235177 - AluJb SINE Alu -11 301 5 329 40 40 0 chr4 10093329 10093379 -192234968 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 2019 124 0 0 chr4 10093381 10093663 -192234684 - AluSx SINE Alu -30 282 1 593 206 38 0 chr4 10093670 10093801 -192234546 - L1MB4 LINE L1 0 6180 6045 186 43 0 0 chr4 10093978 10094001 -192234346 + (CTG)n Simple_repeat Simple_repeat 3 25 0 1130 186 25 39 chr4 10094319 10094599 -192233748 - AluJo SINE Alu -36 276 1 1770 172 0 7 chr4 10094630 10094938 -192233409 + AluSx SINE Alu 7 312 0 385 332 65 13 chr4 10095006 10095238 -192233109 + L2 LINE L2 2710 2953 -361 293 248 70 104 chr4 10095237 10095521 -192232826 - L2 LINE L2 -91 3181 2910 * 1644 115 0 0 chr4 10095627 10095853 -192232494 + L1P LINE L1 1 226 -5920 841 100 0 9 chr4 10145853 10145990 -192182357 + AluSp/q SINE Alu 177 312 0 858 129 0 43 chr4 10147707 10147846 -192180501 - FLAM_C SINE Alu 0 133 1 886 164 6 73 chr4 10147876 10148041 -192180306 + FRAM SINE Alu 1 153 -23 2435 66 16 7 chr4 10148051 10148355 -192179992 + AluSp SINE Alu 2 308 -5 679 150 17 0 chr4 10148736 10148856 -192179491 - MSTA LTR MaLR -306 122 1 3586 205 23 29 chr4 10148856 10149050 -192179297 - MER21-int LTR ERV1 -919 3272 3078 1955 104 80 7 chr4 10149050 10149337 -192179010 - AluSx SINE Alu -4 308 1 3586 205 23 29 chr4 10149337 10149557 -192178790 - MER21-int LTR ERV1 -1113 3078 2858 2017 113 46 0 chr4 10149557 10149841 -192178506 - AluSp SINE Alu -15 298 2 3586 205 23 29 chr4 10149841 10150212 -192178135 - MER21-int LTR ERV1 -1333 2858 2491 1672 181 7 7 chr4 10150471 10150774 -192177573 - MER21-int LTR ERV1 -1711 2480 2178 2413 106 0 3 chr4 10150778 10151089 -192177258 - AluSq SINE Alu -3 310 1 934 175 5 31 chr4 10151091 10151285 -192177062 - MLT1D LTR MaLR -316 189 1 223 250 115 83 chr4 10151313 10151331 -192177016 + L2 LINE L2 1797 1813 -1501 2319 129 3 0 chr4 10151331 10151641 -192176706 - AluSp SINE Alu -2 311 1 223 250 115 83 chr4 10151641 10151778 -192176569 + L2 LINE L2 1813 1957 -1357 348 221 78 52 chr4 10152038 10152192 -192176155 - L1ME3A LINE L1 -44 6126 5969 282 158 0 0 chr4 10152216 10152273 -192176074 - L1MC1 LINE L1 -1 6332 6276 1200 118 0 24 chr4 10152273 10152443 -192175904 + AluSg SINE Alu 1 166 -144 1340 169 4 0 chr4 10152546 10152783 -192175564 - L1MC1 LINE L1 -313 6020 5783 2003 153 0 3 chr4 10152792 10153117 -192175230 - AluSx SINE Alu 0 312 1 345 250 164 8 chr4 10153443 10153571 -192174776 - MLT1J2 LTR MaLR -51 399 252 2631 91 100 5 chr4 10154260 10154669 -192173678 - LTR7 LTR ERV1 -2 448 1 1213 189 121 33 chr4 10155122 10155497 -192172850 - MLT1C LTR MaLR 0 505 59 * 2234 204 40 32 chr4 10155487 10155504 -192172843 - LTR1 LTR ERV1 -281 504 489 6341 125 11 10 chr4 10155504 10156422 -192171925 - LTR5 LTR ERVK 0 969 51 2234 204 40 32 chr4 10156422 10156904 -192171443 - LTR1 LTR ERV1 -296 489 1 1451 132 4 66 chr4 10157786 10158029 -192170318 + AluSg/x SINE Alu 73 300 -12 907 147 47 32 chr4 10158036 10158226 -192170121 + MSTB LTR MaLR 196 388 -38 260 86 0 0 chr4 10158225 10158260 -192170087 + U2 snRNA snRNA 1 35 -153 * 364 109 0 0 chr4 10158258 10158313 -192170034 + MSTB LTR MaLR 374 428 0 605 175 22 36 chr4 10158313 10158450 -192169897 + MER21-int LTR ERV1 3268 3402 -789 2311 114 0 0 chr4 10158450 10158747 -192169600 - AluSg SINE Alu -13 297 1 2304 118 0 9 chr4 10160270 10160585 -192167762 - AluSx SINE Alu 0 312 1 719 274 58 0 chr4 10160797 10161020 -192167327 - MER82 DNA MER2_type 0 653 418 2136 112 38 0 chr4 10161021 10161308 -192167039 - AluSx SINE Alu -14 298 1 323 157 112 34 chr4 10162929 10162981 -192165366 - MLT2A2 LTR ERVL 0 453 407 267 31 0 0 chr4 10162981 10163013 -192165334 + (TA)n Simple_repeat Simple_repeat 2 33 0 323 157 112 34 chr4 10163013 10163049 -192165298 - MLT2A2 LTR ERVL -46 407 358 237 132 0 0 chr4 10163048 10163086 -192165261 + MLT2A1 LTR ERVL 349 386 -58 * 243 0 0 0 chr4 10163089 10163116 -192165231 + (TG)n Simple_repeat Simple_repeat 2 28 0 181 323 39 55 chr4 10163161 10163172 -192165175 - L2 LINE L2 -77 3236 3226 2078 128 3 7 chr4 10163172 10163470 -192164877 + AluSg SINE Alu 1 297 -13 181 323 39 55 chr4 10163470 10163585 -192164762 - L2 LINE L2 -87 3226 3112 202 283 0 0 chr4 10163767 10163820 -192164527 + MIR SINE MIR 203 255 -7 465 19 0 0 chr4 10165188 10165242 -192163105 + (TA)n Simple_repeat Simple_repeat 2 55 0 747 121 0 0 chr4 10165242 10165341 -192163006 - AluSx SINE Alu -18 291 193 1205 68 7 7 chr4 10165342 10165488 -192162859 - AluSx SINE Alu -167 146 1 1262 193 42 87 chr4 10165494 10165855 -192162492 - L1MB7 LINE L1 -9 6175 5834 2067 127 3 7 chr4 10165855 10166146 -192162201 - AluSx SINE Alu -17 295 6 1262 193 42 87 chr4 10166146 10166210 -192162137 - L1MB7 LINE L1 -350 5834 5769 724 208 6 6 chr4 10167072 10167250 -192161097 + CT-rich Low_complexity Low_complexity 1 178 0 2040 137 20 3 chr4 10167250 10167556 -192160791 - AluSq SINE Alu -2 311 1 23 33 0 0 chr4 10167935 10167965 -192160382 + AT_rich Low_complexity Low_complexity 1 30 0 785 196 0 0 chr4 10167968 10168101 -192160246 - FLAM_C SINE Alu 0 133 1 762 113 9 0 chr4 10168487 10168602 -192159745 - THE1B LTR MaLR -248 116 1 776 262 29 57 chr4 10169007 10169286 -192159061 - MLT1A2 LTR MaLR -17 357 87 319 313 67 8 chr4 10169308 10169442 -192158905 - MIR SINE MIR -73 189 48 356 345 20 14 chr4 10169590 10169738 -192158609 + L2 LINE L2 3165 3313 0 570 260 0 0 chr4 10170782 10171130 -192157217 + (TG)n Simple_repeat Simple_repeat 1 348 0 543 255 0 0 chr4 10171199 10171468 -192156879 + (TG)n Simple_repeat Simple_repeat 1 269 0 194 267 67 33 chr4 10172577 10172637 -192155710 + MIR3 SINE MIR 146 207 -1 523 328 114 45 chr4 10172946 10173411 -192154936 - L2 LINE L2 -1 3271 2765 429 54 32 172 chr4 10173411 10173450 -192154897 + MADE1 DNA Mariner 1 21 -59 2003 136 13 20 chr4 10173450 10173752 -192154595 - AluSx SINE Alu -12 300 1 429 54 32 172 chr4 10173752 10173805 -192154542 + MADE1 DNA Mariner 21 80 0 523 328 114 45 chr4 10173805 10173885 -192154462 - L2 LINE L2 -507 2765 2692 466 244 8 17 chr4 10173907 10174026 -192154321 + MER58B DNA MER1_type 210 327 -14 1631 186 3 21 chr4 10174213 10174498 -192153849 + AluJo SINE Alu 3 282 -30 294 87 0 0 chr4 10174498 10174544 -192153803 + (TC)n Simple_repeat Simple_repeat 1 46 0 378 0 0 0 chr4 10174545 10174587 -192153760 + (TA)n Simple_repeat Simple_repeat 2 43 0 1175 231 15 45 chr4 10174628 10174650 -192153697 + L1MB3 LINE L1 5794 5815 -368 1931 141 7 0 chr4 10174650 10174927 -192153420 + AluSx SINE Alu 1 279 -33 252 111 0 0 chr4 10174934 10174979 -192153368 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1175 231 15 45 chr4 10174979 10175073 -192153274 + L1MB3 LINE L1 5821 5916 -267 2000 141 7 0 chr4 10175073 10175364 -192152983 + AluSx SINE Alu 3 295 -17 1175 231 15 45 chr4 10175364 10175616 -192152731 + L1MB3 LINE L1 5916 6153 -30 30 0 0 0 chr4 10175636 10175666 -192152681 + AT_rich Low_complexity Low_complexity 1 30 0 3460 211 21 64 chr4 10176128 10177141 -192151206 + LTR5 LTR ERVK 1 969 0 212 158 0 0 chr4 10177410 10177448 -192150899 + (ATG)n Simple_repeat Simple_repeat 3 40 0 289 354 51 23 chr4 10177467 10177682 -192150665 - MIR SINE MIR -10 252 32 2107 123 0 7 chr4 10178076 10178386 -192149961 + AluSg SINE Alu 1 308 -2 211 306 63 27 chr4 10178773 10178884 -192149463 + L2 LINE L2 3158 3272 0 1792 154 0 20 chr4 10178949 10179254 -192149093 - AluSc SINE Alu -10 299 1 778 237 280 15 chr4 10180966 10183179 -192145168 - SATR1 Satellite Satellite -6 2800 1 1574 225 100 37 chr4 10183372 10185008 -192143339 - SATR1 Satellite Satellite -20 1739 1 25 95 0 0 chr4 10185120 10185194 -192143153 + AT_rich Low_complexity Low_complexity 1 74 0 386 216 5 63 chr4 10185244 10185434 -192142913 + (TTA)n Simple_repeat Simple_repeat 2 180 0 18118 99 14 6 chr4 10185525 10188191 -192140156 + HERVE LTR ERV1 1108 3795 -4018 360 257 176 0 chr4 10188728 10188771 -192139576 + MER58C DNA MER1_type 56 90 -2330 234 0 0 0 chr4 10188771 10188797 -192139550 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 396 0 0 0 chr4 10188796 10188840 -192139507 + (CA)n Simple_repeat Simple_repeat 1 44 0 360 257 176 0 chr4 10188797 10188932 -192139415 + MER58C DNA MER1_type 90 215 0 678 301 98 3 chr4 10188933 10189247 -192139100 + MLT1L LTR MaLR 218 561 -54 853 214 75 15 chr4 10189247 10189448 -192138899 - MER58A DNA MER1_type 0 224 12 1352 216 131 45 chr4 10190491 10190940 -192137407 + MLT1D LTR MaLR 1 488 -17 2837 106 48 9 chr4 10191002 10191322 -192137025 + L1MA2 LINE L1 5846 6189 -115 1801 94 123 29 chr4 10191322 10191598 -192136749 + AluY SINE Alu 2 303 -8 2837 106 48 9 chr4 10191598 10191713 -192136634 + L1MA2 LINE L1 6189 6298 -6 329 290 195 30 chr4 10191893 10192262 -192136085 + L2 LINE L2 2015 2444 -870 2941 162 133 11 chr4 10192297 10192927 -192135420 + MER39 LTR ERV1 1 707 0 706 279 80 78 chr4 10192928 10193638 -192134709 + L2 LINE L2 2487 3213 -59 1698 170 38 10 chr4 10193698 10193986 -192134361 - AluJb SINE Alu -16 296 1 189 0 0 0 chr4 10194056 10194077 -192134270 + (A)n Simple_repeat Simple_repeat 1 21 0 741 271 112 77 chr4 10194411 10194993 -192133354 + MLT1L LTR MaLR 1 602 -13 3471 216 111 45 chr4 10194998 10196189 -192132158 - L1MC4 LINE L1 -3 8039 6770 257 279 81 22 chr4 10196450 10196586 -192131761 - MLT1J2 LTR MaLR -240 210 67 210 331 71 76 chr4 10196918 10197380 -192130967 - L2 LINE L2 -339 2975 2516 891 26 0 17 chr4 10197898 10198014 -192130333 - L1HS LINE L1 0 6155 6042 456 223 54 0 chr4 10198014 10198126 -192130221 - MIR SINE MIR -125 137 20 2055 117 13 17 chr4 10199068 10199368 -192128979 - AluSx SINE Alu -13 299 1 377 281 96 0 chr4 10199432 10199567 -192128780 + L2 LINE L2 2898 3045 -227 265 314 20 0 chr4 10199636 10199738 -192128609 - MLT1K LTR MaLR 0 588 485 282 269 22 0 chr4 10199772 10199906 -192128441 + CT-rich Low_complexity Low_complexity 2 138 0 533 255 43 70 chr4 10200184 10200494 -192127853 - MLT1G3 LTR MaLR -177 378 59 2299 134 97 35 chr4 10200526 10200929 -192127418 + MSTA LTR MaLR 1 428 0 339 274 89 13 chr4 10201012 10201169 -192127178 - MLT1J2 LTR MaLR -229 221 53 196 270 104 35 chr4 10201946 10202061 -192126286 + L2 LINE L2 2824 2946 -326 367 276 92 29 chr4 10202120 10202294 -192126053 + L2 LINE L2 3095 3279 -34 407 155 0 0 chr4 10202368 10202439 -192125908 - AluS SINE Alu -11 301 231 306 314 96 78 chr4 10202711 10202982 -192125365 - L2 LINE L2 -1 3271 2996 606 63 0 0 chr4 10203112 10203191 -192125156 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 1879 125 0 45 chr4 10203205 10203494 -192124853 - AluSx SINE Alu -36 276 1 1510 143 198 0 chr4 10203882 10204140 -192124207 - AluSg1 SINE Alu 0 309 1 406 224 12 0 chr4 10204163 10204248 -192124099 - MIR SINE MIR -106 156 71 2511 74 0 0 chr4 10204491 10204788 -192123559 - AluY SINE Alu -14 297 1 285 29 0 0 chr4 10204813 10204847 -192123500 + (TC)n Simple_repeat Simple_repeat 1 34 0 210 333 13 0 chr4 10204847 10204922 -192123425 + L2 LINE L2 3197 3272 0 204 269 15 30 chr4 10204976 10205043 -192123304 - L2 LINE L2 -268 3004 2939 223 345 61 14 chr4 10205417 10205565 -192122782 - L2 LINE L2 -830 2484 2330 221 372 78 0 chr4 10206228 10206357 -192121990 - MIR SINE MIR -77 185 47 328 220 44 55 chr4 10209951 10210042 -192118305 + L2 LINE L2 3222 3311 -2 348 259 0 74 chr4 10210210 10210318 -192118029 + MIR3 SINE MIR 61 160 -48 671 312 71 67 chr4 10210758 10211194 -192117153 - L2 LINE L2 -33 3280 2843 804 269 27 0 chr4 10211261 10211447 -192116900 - MIR SINE MIR -59 203 13 448 258 80 49 chr4 10211672 10211835 -192116512 - MIR SINE MIR -48 214 47 740 176 118 43 chr4 10211836 10212023 -192116324 + MER20 DNA MER1_type 1 201 -18 331 256 116 38 chr4 10212096 10212202 -192116145 + MIR SINE MIR 31 145 -63 531 207 44 68 chr4 10212282 10212414 -192115933 - MLT1F1 LTR MaLR -421 146 13 605 203 153 21 chr4 10212439 10213255 -192115092 - L1MC4 LINE L1 -3 8039 7046 1768 177 3 6 chr4 10213255 10213566 -192114781 - AluJo SINE Alu -2 310 1 605 203 153 21 chr4 10213566 10213605 -192114742 - L1MC4 LINE L1 -996 7046 7014 1794 236 23 21 chr4 10213777 10214205 -192114142 - L1MC4 LINE L1 -1028 7014 6586 442 305 102 0 chr4 10215013 10215200 -192113147 - MIR SINE MIR -4 258 53 374 320 35 17 chr4 10215544 10215716 -192112631 + MER117 DNA MER1_type 20 194 -3 312 325 73 8 chr4 10215727 10215850 -192112497 + MER5B DNA MER1_type 3 133 -45 613 236 58 94 chr4 10216386 10216662 -192111685 + MLT1-int LTR MaLR 1106 1371 0 1156 249 81 35 chr4 10216666 10217012 -192111335 + MLT1F1 LTR MaLR 206 567 0 1732 173 0 61 chr4 10217234 10217563 -192110784 - AluJo SINE Alu -3 309 1 581 136 11 11 chr4 10217846 10217934 -192110413 - 5S rRNA rRNA -31 90 3 1750 61 5 0 chr4 10217945 10218158 -192110189 - AluSp SINE Alu -9 304 91 427 247 118 12 chr4 10218287 10218457 -192109890 - MIR3 SINE MIR -17 191 4 183 340 160 19 chr4 10219014 10219120 -192109227 + MIR SINE MIR 24 144 -64 2093 109 10 23 chr4 10219224 10219527 -192108820 - AluSq SINE Alu -14 299 1 460 269 34 20 chr4 10219530 10219679 -192108668 - MIR SINE MIR -75 187 37 222 311 0 0 chr4 10220006 10220080 -192108267 - MIR SINE MIR -1 261 188 2213 106 7 10 chr4 10220082 10220384 -192107963 - AluSc SINE Alu -8 301 1 687 312 17 4 chr4 10220957 10221188 -192107159 - MIR SINE MIR -12 250 17 397 279 31 0 chr4 10221511 10221640 -192106707 + MIR SINE MIR 116 248 -14 484 258 90 77 chr4 10221650 10222104 -192106243 - MLT1I LTR MaLR 0 409 1 192 314 47 12 chr4 10222140 10222226 -192106121 - L2 LINE L2 -16 3256 3168 453 301 49 32 chr4 10222305 10222491 -192105856 - MIR SINE MIR -62 146 5 448 127 63 0 chr4 10222869 10222948 -192105399 - AluJ/FRAM SINE Alu -15 297 214 254 261 0 34 chr4 10222992 10223080 -192105267 + L2 LINE L2 3188 3272 0 227 263 32 32 chr4 10223715 10223810 -192104537 - MIR3 SINE MIR -6 202 108 262 299 37 30 chr4 10223821 10223955 -192104392 + MIR SINE MIR 20 154 -108 1727 193 45 11 chr4 10224295 10224360 -192103987 - MLT1A1 LTR MaLR 0 365 304 252 0 0 0 chr4 10224360 10224388 -192103959 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1727 193 45 11 chr4 10224388 10224675 -192103672 - MLT1A1 LTR MaLR -61 304 1 562 230 56 8 chr4 10225182 10225308 -192103039 - LTR16B LTR ERVL -268 196 65 1663 201 25 23 chr4 10225324 10225676 -192102671 + MLT1B LTR MaLR 6 358 -32 1441 163 137 10 chr4 10225676 10225982 -192102365 - MER2 DNA MER2_type 0 345 1 257 343 122 12 chr4 10226494 10226739 -192101608 - LTR16C LTR ERVL -126 365 94 2235 96 13 19 chr4 10227626 10227938 -192100409 - AluSq SINE Alu -3 310 1 286 232 102 95 chr4 10228134 10228345 -192100002 + MIR SINE MIR 30 241 -21 540 223 109 6 chr4 10228444 10228619 -192099728 - MIR SINE MIR -30 232 40 352 272 139 23 chr4 10228733 10228906 -192099441 + L2 LINE L2 3121 3313 0 224 390 10 0 chr4 10228913 10229013 -192099334 - L2 LINE L2 -17 3296 3196 437 254 119 6 chr4 10229891 10230068 -192098279 - LTR33A LTR ERVL -10 513 317 759 300 97 25 chr4 10230179 10230499 -192097848 - MLT1I LTR MaLR -4 405 63 1667 143 20 8 chr4 10230501 10230753 -192097594 + AluSq SINE Alu 11 265 -48 979 228 49 4 chr4 10230868 10231114 -192097233 - MIR SINE MIR -3 259 3 2997 122 60 6 chr4 10231199 10231684 -192096663 + MER9 LTR ERVK 1 511 0 329 322 58 76 chr4 10232288 10232670 -192095677 + L2 LINE L2 2862 3236 -36 216 204 0 0 chr4 10233573 10233617 -192094730 + (TAA)n Simple_repeat Simple_repeat 2 45 0 372 239 54 15 chr4 10234702 10234832 -192093515 + MIR SINE MIR 89 223 -39 183 80 0 0 chr4 10234917 10234942 -192093405 + (T)n Simple_repeat Simple_repeat 1 25 0 528 308 54 23 chr4 10235077 10235337 -192093010 + L2 LINE L2 3046 3313 0 199 254 99 0 chr4 10235378 10235449 -192092898 + MIR SINE MIR 74 151 -111 880 291 65 63 chr4 10236136 10236281 -192092066 + MLT1K LTR MaLR 125 268 -320 1059 219 70 110 chr4 10236281 10236852 -192091495 + MLT1H LTR MaLR 2 549 0 880 291 65 63 chr4 10236852 10237167 -192091180 + MLT1K LTR MaLR 268 586 -2 193 388 10 0 chr4 10237312 10237415 -192090932 - L2 LINE L2 -1 3312 3209 183 283 0 0 chr4 10238611 10238657 -192089690 - L2 LINE L2 0 3272 3227 983 128 0 0 chr4 10238888 10239021 -192089326 + AluSx SINE Alu 1 133 -180 1258 134 0 0 chr4 10239051 10239230 -192089117 + AluSx SINE Alu 120 298 -14 250 389 87 0 chr4 10239311 10239437 -192088910 + L2 LINE L2 3136 3272 0 413 223 11 11 chr4 10239542 10239636 -192088711 - MLT1H LTR MaLR 0 549 456 348 302 57 48 chr4 10240441 10240689 -192087658 - MLT1J LTR MaLR 0 511 262 240 224 102 61 chr4 10240947 10240962 -192087385 - Charlie7 DNA MER1_type -2510 102 89 2275 112 0 0 chr4 10240962 10241276 -192087071 + AluSx SINE Alu 1 314 0 240 224 102 61 chr4 10241276 10241356 -192086991 - Charlie7 DNA MER1_type -2523 89 1 254 160 20 0 chr4 10241368 10241418 -192086929 - MLT1D LTR MaLR 0 505 455 1813 144 23 31 chr4 10241421 10241768 -192086579 + L1MA9 LINE L1 5958 6162 -16 1834 192 52 63 chr4 10241928 10242391 -192085956 - MLT1D LTR MaLR -41 464 7 411 234 45 36 chr4 10242411 10242522 -192085825 - L2 LINE L2 0 3313 3202 956 185 60 52 chr4 10243429 10243783 -192084564 - MER31B LTR ERV1 0 466 1 2342 87 17 0 chr4 10243915 10244215 -192084132 + AluY SINE Alu 1 305 -6 6425 226 59 55 chr4 10244344 10244726 -192083621 - L1ME LINE L1 -604 5956 5577 2107 141 0 0 chr4 10244726 10245030 -192083317 + AluSx SINE Alu 1 304 -8 6425 226 59 55 chr4 10245030 10246426 -192081921 - L1ME LINE L1 -983 5577 4188 2340 75 7 0 chr4 10246426 10246732 -192081615 + L1PA7 LINE L1 5847 6154 0 6425 226 59 55 chr4 10246732 10247693 -192080654 - L1ME LINE L1 -2372 4188 2604 493 249 60 38 chr4 10247706 10247891 -192080456 - L1ME LINE L1 -4658 1882 1694 277 329 100 46 chr4 10247911 10248191 -192080156 - L1ME LINE L1 -6205 335 41 1338 190 62 29 chr4 10249063 10249171 -192079176 + MSTC LTR MaLR 1 104 -324 207 114 0 0 chr4 10249171 10249206 -192079141 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 1338 190 62 29 chr4 10249206 10249464 -192078883 + MSTC LTR MaLR 104 426 -2 249 361 54 39 chr4 10249700 10249830 -192078517 + L2 LINE L2 3137 3268 -4 379 344 6 33 chr4 10250344 10250524 -192077823 - L3 LINE CR1 -11 1566 1392 347 286 32 71 chr4 10250534 10250660 -192077687 - MER117 DNA MER1_type -6 191 71 222 239 22 0 chr4 10251035 10251081 -192077266 - MIR SINE MIR -134 74 28 24 0 0 0 chr4 10251318 10251342 -192077005 + AT_rich Low_complexity Low_complexity 1 24 0 385 222 14 0 chr4 10252372 10252444 -192075903 - AluJ/FLAM SINE Alu -219 83 11 340 256 197 0 chr4 10252652 10252789 -192075558 + MIR SINE MIR 47 210 -52 285 257 67 89 chr4 10252885 10253064 -192075283 + MIR SINE MIR 21 195 -67 1760 266 92 16 chr4 10253086 10253825 -192074522 + L2 LINE L2 2298 3083 -230 1398 128 0 0 chr4 10254286 10254473 -192073874 + AluSq SINE Alu 1 187 -126 6424 100 18 8 chr4 10254474 10255706 -192072641 + L1PA11 LINE L1 4944 6174 0 210 233 11 111 chr4 10256092 10256182 -192072165 - MIR SINE MIR -112 150 70 755 151 88 12 chr4 10256360 10256558 -192071789 + MLT1B LTR MaLR 1 232 -158 2516 149 169 26 chr4 10256558 10257095 -192071252 + LTR18B LTR ERVL 1 614 0 902 185 0 0 chr4 10257119 10257270 -192071077 + MLT1B LTR MaLR 228 378 -12 214 228 76 0 chr4 10257885 10257964 -192070383 + MIR SINE MIR 85 169 -93 630 288 36 24 chr4 10259111 10259392 -192068955 + L2 LINE L2 2792 3075 -238 361 281 86 16 chr4 10260330 10260458 -192067889 - MER20B DNA MER1_type -604 179 43 1865 64 4 60 chr4 10260880 10260969 -192067378 + L1PB1 LINE L1 5887 5980 -171 2329 112 0 3 chr4 10260969 10261283 -192067064 + AluSq SINE Alu 1 313 0 1865 64 4 60 chr4 10261283 10261474 -192066873 + L1PB1 LINE L1 5980 6151 0 304 224 0 0 chr4 10262816 10262874 -192065473 + L2 LINE L2 3214 3271 -1 352 333 67 7 chr4 10263112 10263262 -192065085 + MIR SINE MIR 103 261 -1 227 265 36 12 chr4 10263286 10263369 -192064978 - MIR SINE MIR -61 147 71 234 156 0 0 chr4 10263369 10263414 -192064933 + (ATG)n Simple_repeat Simple_repeat 1 45 0 467 298 70 56 chr4 10263449 10263478 -192064869 - MIR SINE MIR -32 230 203 5218 141 32 57 chr4 10263478 10265201 -192063146 + L1PA13 LINE L1 4441 6159 -4 467 298 70 56 chr4 10265201 10265386 -192062961 - MIR SINE MIR -59 203 13 313 250 7 43 chr4 10265672 10265812 -192062535 - L1ME4a LINE L1 -1 6120 5986 840 263 73 34 chr4 10265817 10265953 -192062394 - HAL1b LINE L1 -901 447 318 1807 138 66 39 chr4 10265953 10266316 -192062031 - THE1C LTR MaLR 0 375 3 840 263 73 34 chr4 10266316 10266536 -192061811 - HAL1b LINE L1 -1030 318 77 217 261 0 0 chr4 10266565 10266611 -192061736 + CT-rich Low_complexity Low_complexity 3 48 0 251 299 50 50 chr4 10267638 10267808 -192060539 - MIR SINE MIR -50 212 38 951 282 169 6 chr4 10268038 10268400 -192059947 - LTR16C LTR ERVL 0 491 71 789 299 24 36 chr4 10268733 10268984 -192059363 + MIR SINE MIR 15 262 0 356 240 44 11 chr4 10269253 10269357 -192058990 - MIR SINE MIR -61 147 56 180 97 0 0 chr4 10269358 10269389 -192058958 + (A)n Simple_repeat Simple_repeat 1 31 0 391 259 133 0 chr4 10269935 10270078 -192058269 + MIR SINE MIR 31 192 -70 2369 68 0 0 chr4 10270229 10270521 -192057826 - AluY SINE Alu -19 292 1 2686 10 0 3 chr4 10270632 10270938 -192057409 - AluY SINE Alu -6 305 1 409 301 94 15 chr4 10271181 10271392 -192056955 - MIR SINE MIR -18 190 11 181 301 165 19 chr4 10271702 10271805 -192056542 + MIR SINE MIR 21 138 -124 516 295 65 20 chr4 10272169 10272338 -192056009 + MIR SINE MIR 52 233 -29 1901 145 175 11 chr4 10272338 10272704 -192055643 - MSTA LTR MaLR 0 428 3 516 295 65 20 chr4 10272704 10272734 -192055613 + MIR SINE MIR 233 260 -2 208 333 67 19 chr4 10272755 10272860 -192055487 - L2 LINE L2 -2 3270 3161 337 244 44 31 chr4 10273160 10273310 -192055037 - MIR3 SINE MIR -17 191 37 233 266 210 8 chr4 10273725 10273849 -192054498 + L2 LINE L2 3158 3306 -7 2163 82 7 16 chr4 10273905 10274210 -192054137 - AluY SINE Alu -9 302 1 197 266 42 63 chr4 10274395 10274538 -192053809 - L2 LINE L2 -568 2746 2607 14753 217 60 19 chr4 10275172 10277453 -192050894 + L1PA13 LINE L1 2 2188 -4609 2751 10 0 0 chr4 10277453 10277760 -192050587 - AluYb8 SINE Alu -11 307 1 14753 217 60 19 chr4 10277760 10278117 -192050230 + L1PA13 LINE L1 2188 2529 -4268 2011 109 53 0 chr4 10278117 10278402 -192049945 + AluSx SINE Alu 1 300 -12 14753 217 60 19 chr4 10278402 10281024 -192047323 + L1PA13 LINE L1 2529 5494 -1303 209 269 86 21 chr4 10281312 10281405 -192046942 - L2 LINE L2 -1 3271 3173 672 218 47 21 chr4 10281681 10281874 -192046473 + LTR16C LTR ERVL 281 478 -13 258 308 13 13 chr4 10281997 10282075 -192046272 - MER81 DNA DNA -36 78 1 415 222 10 20 chr4 10282559 10282658 -192045689 + MER94 DNA DNA 17 114 -20 192 222 181 0 chr4 10282658 10282730 -192045617 - MIR SINE MIR -125 137 53 2212 150 33 34 chr4 10282730 10283276 -192045071 + MLT2A2 LTR ERVL 3 544 -10 391 254 77 0 chr4 10283428 10283531 -192044816 - MIR3 SINE MIR -51 157 54 180 313 16 0 chr4 10284778 10284842 -192043505 + L2 LINE L2 3001 3065 -207 791 289 75 21 chr4 10284887 10285088 -192043259 + L2 LINE L2 2929 3156 -157 2656 112 18 50 chr4 10285088 10285527 -192042820 - MSTA LTR MaLR -1 427 3 791 289 75 21 chr4 10285527 10285657 -192042690 + L2 LINE L2 3156 3278 -35 315 71 0 0 chr4 10285719 10285761 -192042586 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 302 345 0 0 chr4 10285784 10285868 -192042479 + L2 LINE L2 3187 3270 -2 477 292 182 15 chr4 10285897 10286041 -192042306 + L2 LINE L2 2715 2834 -479 3479 137 24 7 chr4 10286041 10286595 -192041752 + MER34B LTR ERV1 1 563 -2 477 292 182 15 chr4 10286595 10286960 -192041387 + L2 LINE L2 2834 3313 0 386 313 47 40 chr4 10287052 10287176 -192041171 + L2 LINE L2 3122 3249 -23 1673 167 46 0 chr4 10287176 10287458 -192040889 - AluJo SINE Alu -17 295 1 386 313 47 40 chr4 10287458 10287483 -192040864 + L2 LINE L2 3249 3272 0 1523 239 44 28 chr4 10287796 10288232 -192040115 + LTR47B LTR ERVL 1 443 0 610 191 0 0 chr4 10288818 10288923 -192039424 + MLT1D LTR MaLR 47 151 -354 995 237 19 0 chr4 10289156 10289371 -192038976 + MER20 DNA MER1_type 1 219 0 238 256 158 0 chr4 10290103 10290185 -192038162 + MIR SINE MIR 50 144 -118 325 86 35 0 chr4 10290224 10290282 -192038065 + (TTA)n Simple_repeat Simple_repeat 2 61 0 362 325 69 32 chr4 10290350 10290596 -192037751 + L2 LINE L2 2674 2928 -386 325 250 60 30 chr4 10291422 10291522 -192036825 + MIR SINE MIR 159 261 -1 183 100 0 0 chr4 10291522 10291552 -192036795 + (ATG)n Simple_repeat Simple_repeat 2 31 0 181 235 59 47 chr4 10293276 10293361 -192034986 + L2 LINE L2 2672 2757 -557 231 219 21 125 chr4 10293690 10293786 -192034561 + L2 LINE L2 3223 3308 -5 789 229 124 40 chr4 10293857 10294281 -192034066 + MLT1C LTR MaLR 1 467 0 211 261 46 15 chr4 10294745 10294810 -192033537 + MIR SINE MIR 29 95 -167 631 245 13 50 chr4 10294945 10295104 -192033243 - FRAM SINE Alu -13 153 1 21 0 0 0 chr4 10295111 10295132 -192033215 + AT_rich Low_complexity Low_complexity 1 21 0 1860 182 71 35 chr4 10295312 10295763 -192032584 - MLT1C LTR MaLR 0 467 1 305 281 176 7 chr4 10295763 10295916 -192032431 + MIR SINE MIR 14 192 -70 358 193 108 0 chr4 10296143 10296226 -192032121 - MIR3 SINE MIR -25 183 92 324 250 0 29 chr4 10297070 10297174 -192031173 + LTR33 LTR ERVL 414 514 -7 270 281 11 0 chr4 10297188 10297334 -192031013 + L2 LINE L2 3194 3306 -7 1296 259 89 44 chr4 10297396 10297878 -192030469 + MLT1H LTR MaLR 4 549 0 279 333 104 5 chr4 10297918 10298110 -192030237 + L2 LINE L2 2636 2846 -468 281 230 40 54 chr4 10298235 10298309 -192030038 - MER91B DNA MER1_type 0 190 118 203 233 0 0 chr4 10299445 10299488 -192028859 - MER91B DNA MER1_type -153 43 1 320 269 96 10 chr4 10299630 10299734 -192028613 + MIR SINE MIR 18 130 -132 563 210 0 25 chr4 10300071 10300190 -192028157 + MER106B DNA MER1_type 36 151 -908 356 269 39 0 chr4 10300226 10300330 -192028017 + LTR33 LTR ERVL 354 461 -60 1581 160 11 4 chr4 10300351 10300651 -192027696 + AluJo SINE Alu 18 319 0 218 213 21 0 chr4 10301225 10301272 -192027075 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 236 269 75 0 chr4 10302081 10302148 -192026199 + L2 LINE L2 3162 3233 -39 2213 255 63 44 chr4 10302196 10302905 -192025442 + MER21B LTR ERV1 15 737 -126 192 211 0 0 chr4 10303005 10303043 -192025304 + L2 LINE L2 3272 3309 -4 197 253 193 0 chr4 10303054 10303137 -192025210 - L2 LINE L2 -13 3300 3202 381 102 0 0 chr4 10303377 10303436 -192024911 + (TG)n Simple_repeat Simple_repeat 1 59 0 552 249 85 6 chr4 10305218 10305383 -192022964 - MER5B DNA MER1_type 0 178 1 348 253 22 18 chr4 10305536 10305708 -192022639 - MER58 DNA MER1_type 0 2420 20 482 368 0 0 chr4 10305708 10305879 -192022468 + L3 LINE CR1 1405 1575 -2 272 388 26 0 chr4 10306376 10306492 -192021855 + MIR SINE MIR 20 138 -124 2022 69 0 4 chr4 10306492 10306752 -192021595 + AluY SINE Alu 43 301 -10 258 32 0 0 chr4 10307156 10307187 -192021160 + (CA)n Simple_repeat Simple_repeat 2 32 0 281 148 74 0 chr4 10307241 10307295 -192021052 + MIR SINE MIR 203 260 -2 437 386 73 0 chr4 10307388 10307608 -192020739 + MIR SINE MIR 20 255 -7 459 297 179 16 chr4 10307902 10308215 -192020132 + MLT1J2 LTR MaLR 87 450 0 662 240 0 39 chr4 10308326 10308480 -192019867 - AluJo SINE Alu -44 268 121 4252 74 7 4 chr4 10308656 10309207 -192019140 + L1PA10 LINE L1 5606 6158 -10 427 244 53 38 chr4 10309624 10309755 -192018592 - L2 LINE L2 -1 3312 3180 1014 225 14 19 chr4 10309764 10309973 -192018374 + MER58A DNA MER1_type 9 216 -8 252 265 0 15 chr4 10310093 10310161 -192018186 - L2 LINE L2 -236 3077 3011 196 221 58 58 chr4 10310158 10310244 -192018103 + L2 LINE L2 3183 3268 -45 * 434 63 0 16 chr4 10310448 10310511 -192017836 + (TG)n Simple_repeat Simple_repeat 1 62 0 300 321 19 19 chr4 10310888 10310994 -192017353 - MIR SINE MIR -56 152 47 183 352 23 0 chr4 10311132 10311220 -192017127 + MIR SINE MIR 173 262 0 554 317 7 40 chr4 10311677 10311927 -192016420 + MIR SINE MIR 7 249 -13 188 288 41 14 chr4 10311928 10312001 -192016346 - MIR SINE MIR -3 259 185 2190 55 4 7 chr4 10312009 10312281 -192016066 + L1PA7 LINE L1 5865 6135 -19 291 54 0 0 chr4 10312281 10312318 -192016029 + (TA)n Simple_repeat Simple_repeat 2 38 0 367 259 72 126 chr4 10312939 10313287 -192015060 - L2 LINE L2 0 3272 2944 254 309 48 33 chr4 10313859 10313994 -192014353 + MIR SINE MIR 26 171 -37 557 246 123 0 chr4 10314043 10314222 -192014125 - MIR SINE MIR -44 218 18 689 258 6 18 chr4 10314272 10314439 -192013908 - MIR3 SINE MIR -14 194 30 355 337 0 8 chr4 10315398 10315518 -192012829 + MIR SINE MIR 37 154 -63 282 283 62 35 chr4 10315599 10315744 -192012603 - MIR SINE MIR -94 168 20 488 370 40 9 chr4 10316507 10316731 -192011616 + MIR SINE MIR 20 250 -12 394 254 8 51 chr4 10316767 10316885 -192011462 + MIR3 SINE MIR 48 160 -48 1013 198 20 20 chr4 10316888 10317090 -192011257 - MIR SINE MIR -3 259 58 181 333 97 0 chr4 10317305 10317377 -192010970 + L2 LINE L2 3193 3271 -1 390 108 0 0 chr4 10317559 10317624 -192010723 + (GGGA)n Simple_repeat Simple_repeat 1 65 0 714 290 84 9 chr4 10318068 10318506 -192009841 + L1ME4a LINE L1 5603 6073 -48 2487 240 113 10 chr4 10319706 10320959 -192007388 - L1ME1 LINE L1 -5 6161 4753 794 279 82 9 chr4 10320964 10321197 -192007150 - MIR SINE MIR -10 252 3 391 256 0 26 chr4 10321378 10321495 -192006852 + MLT1B LTR MaLR 3 116 -274 * 1676 194 29 62 chr4 10321494 10321641 -192006706 + MLT1C LTR MaLR 64 214 -253 1926 120 3 43 chr4 10321641 10321940 -192006407 + AluSx SINE Alu 18 304 -8 1676 194 29 62 chr4 10321940 10322210 -192006137 + MLT1C LTR MaLR 214 467 0 297 128 0 0 chr4 10322997 10323044 -192005303 + (TC)n Simple_repeat Simple_repeat 1 47 0 2577 105 16 13 chr4 10324643 10325016 -192003331 - THE1C LTR MaLR -1 374 1 245 232 126 53 chr4 10325482 10325577 -192002770 + L2 LINE L2 2641 2742 -572 450 139 0 0 chr4 10325583 10325669 -192002678 + L1 LINE L1 5154 5239 -907 338 342 38 33 chr4 10325820 10326004 -192002343 + LTR33 LTR ERVL 94 278 -243 332 319 43 27 chr4 10326151 10326339 -192002008 + L2 LINE L2 3050 3240 -73 1241 196 63 14 chr4 10326498 10326920 -192001427 - MLT1C LTR MaLR -6 461 1 564 233 101 49 chr4 10326920 10327160 -192001187 - MIR SINE MIR -4 258 4 216 228 18 0 chr4 10327747 10327804 -192000543 + (TA)n Simple_repeat Simple_repeat 2 59 0 303 256 83 39 chr4 10327804 10327960 -192000387 - L1MCa LINE L1 -4350 2076 1914 263 134 73 12 chr4 10327968 10328050 -192000297 + (TA)n Simple_repeat Simple_repeat 1 87 0 2714 168 39 14 chr4 10328154 10328647 -191999700 - MLT1D LTR MaLR 0 505 1 379 336 23 8 chr4 10328658 10328786 -191999561 - MIR SINE MIR -113 149 20 186 347 0 0 chr4 10328967 10329042 -191999305 + L2 LINE L2 2979 3053 -219 237 271 98 33 chr4 10329311 10329433 -191998914 + L2 LINE L2 3136 3265 -7 291 222 136 25 chr4 10329904 10329985 -191998362 + MIR SINE MIR 63 144 -64 696 308 36 18 chr4 10330073 10330294 -191998053 - MIR SINE MIR 0 262 38 304 252 113 63 chr4 10330457 10330616 -191997731 + L1ME4a LINE L1 5827 5993 -128 451 282 8 17 chr4 10331276 10331393 -191996954 - MIR SINE MIR -120 142 27 35 0 0 0 chr4 10332546 10332581 -191995766 + AT_rich Low_complexity Low_complexity 1 35 0 1567 38 0 0 chr4 10332581 10332764 -191995583 - L1PA5 LINE L1 -9 6145 5963 244 150 25 0 chr4 10332787 10332827 -191995520 + MLT1J LTR MaLR 100 140 -371 242 241 13 13 chr4 10332920 10332999 -191995348 + MLT1J LTR MaLR 233 311 -200 579 298 56 0 chr4 10333008 10333186 -191995161 - MER91B DNA MER1_type 0 190 3 296 298 125 0 chr4 10333273 10333377 -191994970 + MER94 DNA DNA 12 128 -6 301 252 143 8 chr4 10333378 10333497 -191994850 + MLT1J LTR MaLR 376 510 -1 272 292 124 0 chr4 10333506 10333619 -191994728 + MIR SINE MIR 18 144 -64 2450 85 3 3 chr4 10334851 10335179 -191993168 + L1PA7 LINE L1 5825 6152 -2 425 356 71 8 chr4 10335602 10335841 -191992506 + MIR SINE MIR 9 262 0 3617 31 0 0 chr4 10335898 10336323 -191992024 + L1PA4 LINE L1 5731 6155 0 2268 149 42 114 chr4 10336731 10337275 -191991072 + MLT1D LTR MaLR 1 505 0 273 29 0 0 chr4 10337315 10337349 -191990998 + (TG)n Simple_repeat Simple_repeat 1 34 0 438 108 0 0 chr4 10337349 10337423 -191990924 + (GA)n Simple_repeat Simple_repeat 2 75 0 367 195 176 19 chr4 10337993 10338164 -191990183 - MIR SINE MIR -58 150 18 294 264 18 55 chr4 10339092 10339202 -191989145 - MIR SINE MIR -83 125 20 2228 103 7 0 chr4 10339260 10339551 -191988796 - AluSp SINE Alu -20 293 1 397 312 21 14 chr4 10339577 10339718 -191988629 - MIR SINE MIR -107 155 14 281 257 54 14 chr4 10340608 10340682 -191987665 - MIR SINE MIR -79 183 107 2259 115 7 0 chr4 10341341 10341646 -191986701 - AluSx SINE Alu -4 308 2 991 197 14 9 chr4 10341736 10341949 -191986398 + MER20 DNA MER1_type 1 214 -5 368 248 139 16 chr4 10342039 10342168 -191986179 + MIR SINE MIR 84 228 -34 314 274 42 21 chr4 10342520 10342615 -191985732 + MIR SINE MIR 28 124 -138 193 330 17 17 chr4 10342693 10342811 -191985536 - MIR SINE MIR -68 140 23 449 284 90 0 chr4 10343656 10343790 -191984557 - L3 LINE CR1 -28 1549 1404 439 281 16 23 chr4 10344210 10344338 -191984009 - MIR SINE MIR -108 154 28 535 269 67 7 chr4 10344703 10344852 -191983495 - MIR3 SINE MIR -22 186 29 209 271 105 60 chr4 10345059 10345192 -191983155 + L3 LINE CR1 1432 1570 -7 1236 63 0 1 chr4 10346035 10346217 -191982130 - L1PA10 LINE L1 -305 5863 5706 2251 72 17 0 chr4 10346223 10346507 -191981840 + L1PA10 LINE L1 5872 6168 0 244 277 102 17 chr4 10346686 10346863 -191981484 + LTR16A LTR ERVL 259 450 0 3139 106 81 50 chr4 10347264 10347847 -191980500 + LTR18B LTR ERVL 1 601 -13 298 250 70 47 chr4 10347854 10347982 -191980365 + L2 LINE L2 2935 3065 -207 188 270 14 27 chr4 10348079 10348153 -191980194 - L2 LINE L2 -24 3248 3176 300 275 135 35 chr4 10348373 10348573 -191979774 + LTR16C LTR ERVL 171 390 -101 304 275 58 0 chr4 10348648 10348768 -191979579 + LTR16C LTR ERVL 353 479 -12 481 324 131 9 chr4 10349462 10349684 -191978663 + MIR SINE MIR 14 262 0 437 343 81 12 chr4 10350387 10350559 -191977788 + MIR SINE MIR 55 238 -24 1377 207 106 71 chr4 10350664 10351048 -191977299 + MLT1C LTR MaLR 1 403 -64 2270 107 13 0 chr4 10351048 10351347 -191977000 - AluSq SINE Alu -10 303 1 1377 207 106 71 chr4 10351347 10351397 -191976950 + MLT1C LTR MaLR 403 450 -17 485 254 82 65 chr4 10351848 10352017 -191976330 + Charlie7 DNA MER1_type 238 414 -2198 697 186 0 64 chr4 10352017 10352157 -191976190 + FLAM_A SINE Alu 1 131 -2 485 254 82 65 chr4 10352157 10352219 -191976128 + Charlie7 DNA MER1_type 414 473 -2139 1034 238 83 79 chr4 10352271 10352480 -191975867 + Charlie7 DNA MER1_type 1674 1881 -731 2189 98 0 7 chr4 10352480 10352793 -191975554 + AluSx SINE Alu 1 311 0 1034 238 83 79 chr4 10352793 10353124 -191975223 + Charlie7 DNA MER1_type 1881 2217 -395 337 305 11 21 chr4 10353168 10353263 -191975084 - MIR SINE MIR -52 210 117 556 215 45 44 chr4 10353802 10354094 -191974253 - MLT1A2 LTR MaLR -3 371 1 241 242 32 0 chr4 10354147 10354209 -191974138 + CT-rich Low_complexity Low_complexity 3 66 0 487 339 92 0 chr4 10354722 10354961 -191973386 + L3 LINE CR1 1284 1544 -33 220 268 0 36 chr4 10355510 10355566 -191972781 - L2 LINE L2 -20 3293 3240 732 42 0 0 chr4 10355944 10356040 -191972307 + (TC)n Simple_repeat Simple_repeat 2 97 0 315 0 0 0 chr4 10356039 10356074 -191972273 + (TA)n Simple_repeat Simple_repeat 1 35 0 * 1297 266 54 36 chr4 10356374 10356765 -191971582 - L2 LINE L2 -1 3312 2915 189 232 101 0 chr4 10357373 10357442 -191970905 - MIR SINE MIR -92 116 41 275 240 150 30 chr4 10357599 10357699 -191970648 + MIR SINE MIR 76 148 -60 1769 174 70 88 chr4 10357725 10358237 -191970110 - MLT1D LTR MaLR -2 503 1 251 308 105 58 chr4 10358599 10358718 -191969629 - MIR3 SINE MIR -26 182 51 4868 95 6 0 chr4 10358718 10359373 -191968974 - L1PA8 LINE L1 0 6172 5514 251 308 105 58 chr4 10359373 10359425 -191968922 - MIR3 SINE MIR -157 51 3 257 301 24 0 chr4 10359569 10359652 -191968695 - MIR3 SINE MIR -24 184 100 737 185 7 7 chr4 10360169 10360320 -191968027 + MLT1A1 LTR MaLR 1 151 -214 280 336 19 9 chr4 10360384 10360491 -191967856 - MIR SINE MIR -68 140 33 2565 78 0 0 chr4 10362337 10362646 -191965701 - AluY SINE Alu -2 309 1 280 327 29 10 chr4 10362750 10362854 -191965493 + MIR SINE MIR 37 142 -66 247 188 42 0 chr4 10363113 10363161 -191965186 + MLT1A1 LTR MaLR 111 160 -389 696 277 32 11 chr4 10363580 10363768 -191964579 + MIR SINE MIR 25 216 -46 298 237 15 104 chr4 10364687 10364822 -191963525 + MIR SINE MIR 89 211 -51 510 267 112 6 chr4 10365014 10365175 -191963172 - MIR SINE MIR -48 214 37 228 306 25 25 chr4 10365405 10365526 -191962821 + MIR SINE MIR 106 226 -36 784 204 10 40 chr4 10367539 10367740 -191960607 + L1MB7 LINE L1 5964 6158 -26 601 256 39 55 chr4 10369240 10369494 -191958853 + MIR SINE MIR 13 262 0 251 359 50 11 chr4 10369495 10369676 -191958671 - MIR SINE MIR -48 214 27 180 283 0 0 chr4 10369905 10369951 -191958396 + L2 LINE L2 3268 3313 0 2045 230 46 53 chr4 10371550 10372120 -191956227 + MER74B LTR ERVL 57 622 0 693 250 17 11 chr4 10372312 10372488 -191955859 - MER5B DNA MER1_type -1 177 1 1118 272 40 13 chr4 10372564 10372943 -191955404 + LTR16A LTR ERVL 62 450 0 776 171 0 0 chr4 10372989 10373118 -191955229 + MER31A LTR ERV1 1 129 -356 222 254 0 0 chr4 10373307 10373362 -191954985 + L2 LINE L2 3218 3272 0 4114 149 40 7 chr4 10374560 10375376 -191952971 + L1MA4A LINE L1 5380 6283 -20 350 290 0 69 chr4 10375849 10375980 -191952367 + MIR SINE MIR 20 141 -121 1822 159 164 13 chr4 10376029 10376366 -191951981 + MSTA LTR MaLR 1 400 -28 1757 156 33 0 chr4 10376366 10376642 -191951705 - AluJb SINE Alu -15 297 13 1822 159 164 13 chr4 10376642 10376676 -191951671 + MSTA LTR MaLR 400 428 0 211 308 22 11 chr4 10376703 10376794 -191951553 + L3 LINE CR1 1480 1571 -6 404 260 49 73 chr4 10377234 10377438 -191950909 + MIR SINE MIR 28 226 -36 1813 176 16 16 chr4 10377446 10377621 -191950726 - AluJb SINE Alu -6 306 132 231 36 0 0 chr4 10377621 10377649 -191950698 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2058 117 4 0 chr4 10377649 10377930 -191950417 - AluSp SINE Alu -31 282 1 1813 176 16 16 chr4 10377930 10378059 -191950288 - AluJb SINE Alu -178 134 1 4283 124 14 9 chr4 10378603 10379248 -191949099 + MER50 LTR ERV1 59 706 -28 236 197 0 121 chr4 10379299 10379365 -191948982 - MER5A DNA MER1_type -64 125 68 2327 99 0 3 chr4 10379367 10379671 -191948676 - AluSq SINE Alu 0 313 11 2257 100 19 13 chr4 10379704 10380013 -191948334 + AluY SINE Alu 1 311 0 206 292 14 28 chr4 10380052 10380124 -191948223 + L3 LINE CR1 1411 1481 -96 2764 239 104 63 chr4 10380789 10381818 -191946529 + HAL1 LINE L1 659 1760 -747 2508 73 6 12 chr4 10381818 10382161 -191946186 + L1PA7 LINE L1 5814 6154 0 2764 239 104 63 chr4 10382161 10382511 -191945836 + HAL1 LINE L1 1760 2094 -413 1309 105 16 174 chr4 10382607 10382912 -191945435 + AluSq SINE Alu 46 302 -11 470 256 48 35 chr4 10382955 10383182 -191945165 + HAL1 LINE L1 2276 2505 -2 666 277 13 22 chr4 10384461 10384685 -191943662 - MIR SINE MIR -37 225 4 6658 89 8 6 chr4 10384750 10386234 -191942113 + L1PA10 LINE L1 4672 6166 -2 341 337 52 23 chr4 10386366 10386538 -191941809 + L2 LINE L2 2896 3072 -200 1712 142 36 26 chr4 10386544 10386846 -191941501 - THE1B LTR MaLR -59 305 1 237 267 34 68 chr4 10387279 10387425 -191940922 - MER5A DNA MER1_type 0 189 49 360 212 8 102 chr4 10387712 10387830 -191940517 - MER5A DNA MER1_type -77 112 6 194 248 142 35 chr4 10388369 10388482 -191939865 + MIR SINE MIR 18 142 -66 583 259 33 58 chr4 10388534 10388777 -191939570 - MIR SINE MIR -4 258 22 256 302 81 23 chr4 10389289 10389461 -191938886 + L1ME4a LINE L1 3364 3545 -2601 230 154 0 0 chr4 10389522 10389561 -191938786 + MLT1D LTR MaLR 467 505 0 396 291 35 82 chr4 10389654 10389877 -191938470 + L1ME4a LINE L1 5522 5727 -394 1924 149 10 0 chr4 10389877 10390172 -191938175 + AluSx SINE Alu 1 298 -14 396 291 35 82 chr4 10390172 10390267 -191938080 + L1ME4a LINE L1 5727 5825 -296 231 222 0 67 chr4 10390565 10390655 -191937692 - L1M4 LINE L1 -1497 4649 4566 1166 166 81 110 chr4 10390864 10391618 -191936729 + LTR2B-int LTR ERV1 1546 3482 -3116 927 174 14 43 chr4 10391885 10392092 -191936255 + LTR2B-int LTR ERV1 3536 3736 -2862 1410 185 136 84 chr4 10392160 10393013 -191935334 + LTR2B-int LTR ERV1 2477 4646 -1685 1462 296 41 35 chr4 10393031 10393067 -191935280 + L1PBa LINE L1 3 37 -6826 2530 112 31 8 chr4 10393067 10393423 -191934924 - THE1B LTR MaLR 0 364 1 1462 296 41 35 chr4 10393423 10394062 -191934285 + L1PBa LINE L1 37 682 -6181 1888 241 45 46 chr4 10394090 10394211 -191934136 + LTR2B-int LTR ERV1 4245 4365 -506 3396 82 43 39 chr4 10394211 10394699 -191933648 + LTR2B LTR ERV1 1 490 0 1888 241 45 46 chr4 10394699 10395204 -191933143 + LTR2B-int LTR ERV1 4365 4870 -1 2582 154 15 42 chr4 10395204 10395659 -191932688 + MER65A LTR ERV1 1 443 -2 10751 183 42 7 chr4 10396076 10396962 -191931385 + L1PA16 LINE L1 2761 3615 -2551 3259 55 12 2 chr4 10396962 10397379 -191930968 + L1PA4 LINE L1 5735 6155 0 10751 183 42 7 chr4 10397379 10399767 -191928580 + L1PA16 LINE L1 3615 6156 -10 211 292 143 37 chr4 10400362 10400578 -191927769 + L2 LINE L2 2354 2592 -722 333 222 50 20 chr4 10400791 10400890 -191927457 + Charlie8 DNA MER1_type 82 183 -2234 300 53 0 0 chr4 10401034 10401072 -191927275 + (CCCCCT)n Simple_repeat Simple_repeat 1 38 0 276 288 0 0 chr4 10401376 10401442 -191926905 + L2 LINE L2 3248 3313 0 234 231 31 0 chr4 10401644 10401709 -191926638 - MIR SINE MIR -60 148 82 369 137 68 0 chr4 10402343 10402416 -191925931 + L1MB4 LINE L1 6103 6180 0 225 160 208 47 chr4 10402830 10402936 -191925411 + L2 LINE L2 3167 3289 -24 288 296 65 42 chr4 10403294 10403510 -191924837 + L2 LINE L2 2836 3056 -216 230 267 3 3 chr4 10403555 10403617 -191924730 - MIR SINE MIR -113 95 34 337 235 0 0 chr4 10404790 10404858 -191923489 + L2 LINE L2 3205 3272 0 245 241 86 52 chr4 10406756 10406872 -191921475 + L2 LINE L2 3194 3313 0 538 309 122 28 chr4 10406883 10407236 -191921111 + L2 LINE L2 2928 3313 0 1010 193 11 21 chr4 10408163 10408350 -191919997 + MER58A DNA MER1_type 37 221 -3 199 273 18 0 chr4 10408964 10409019 -191919328 - MIR SINE MIR -55 153 98 514 189 8 8 chr4 10409074 10409196 -191919151 + CT-rich Low_complexity Low_complexity 3 124 0 649 152 203 19 chr4 10409252 10409410 -191918937 - MLT1B LTR MaLR -203 187 1 223 159 0 0 chr4 10409991 10410035 -191918312 + L2 LINE L2 3269 3312 -1 579 66 0 0 chr4 10410658 10410734 -191917613 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 1294 225 117 9 chr4 10411455 10411780 -191916567 - MLT1A1 LTR MaLR -3 362 3 2257 108 0 0 chr4 10411814 10412111 -191916236 + AluY SINE Alu 1 297 -14 249 303 67 0 chr4 10412828 10412917 -191915430 - LTR16A LTR ERVL -346 104 10 604 271 61 33 chr4 10414108 10414322 -191914025 + MIR SINE MIR 19 238 -24 1485 260 106 48 chr4 10414434 10414529 -191913818 - L2 LINE L2 -1048 2266 2178 2269 123 0 0 chr4 10414529 10414829 -191913518 + AluSx SINE Alu 1 300 -12 1485 260 106 48 chr4 10414829 10415490 -191912857 - L2 LINE L2 -1136 2178 1466 278 255 75 11 chr4 10415498 10415592 -191912755 + MIR SINE MIR 106 205 -57 278 271 79 50 chr4 10416096 10416236 -191912111 + MIR3 SINE MIR 58 201 -7 3838 209 23 62 chr4 10416349 10417357 -191910990 - LTR5 LTR ERVK 0 969 1 1264 151 11 1 chr4 10417592 10417964 -191910383 - MSTB LTR MaLR 0 426 1 538 260 24 8 chr4 10418361 10418507 -191909840 + MLT1H1 LTR MaLR 437 555 0 230 364 45 0 chr4 10418569 10418679 -191909668 - MIR3 SINE MIR -17 191 77 1090 242 28 3 chr4 10418681 10419037 -191909310 - L1 LINE L1 -2751 3395 3031 279 253 0 0 chr4 10420571 10420650 -191907697 + (ATGGTG)n Simple_repeat Simple_repeat 2 80 0 720 222 0 0 chr4 10420683 10420863 -191907484 + (TGG)n Simple_repeat Simple_repeat 1 180 0 725 212 6 0 chr4 10420887 10421066 -191907281 + (TGG)n Simple_repeat Simple_repeat 1 180 0 578 281 22 16 chr4 10421074 10421259 -191907088 - MIR SINE MIR -1 261 76 2399 87 7 0 chr4 10421577 10421875 -191906472 - AluSp SINE Alu -11 302 3 212 186 0 23 chr4 10422082 10422125 -191906222 + CT-rich Low_complexity Low_complexity 2 43 0 231 244 47 122 chr4 10422472 10422555 -191905792 - MIR SINE MIR 0 262 196 2153 106 7 0 chr4 10422555 10422865 -191905482 - AluSp SINE Alu 0 312 1 231 244 47 122 chr4 10422865 10422952 -191905395 - MIR SINE MIR -66 196 104 306 276 58 19 chr4 10423268 10423424 -191904923 + MLT1H LTR MaLR 347 508 -41 414 187 0 0 chr4 10423424 10423499 -191904848 - AluJ/FRAM SINE Alu -12 300 226 221 219 0 0 chr4 10423575 10423616 -191904731 - MIR SINE MIR -209 53 13 192 268 0 0 chr4 10423622 10423663 -191904684 + MIR SINE MIR 104 144 -64 213 65 0 0 chr4 10424119 10424150 -191904197 + (GA)n Simple_repeat Simple_repeat 1 31 0 428 301 182 7 chr4 10424162 10424305 -191904042 - MIR SINE MIR -75 187 20 604 282 253 2 chr4 10424517 10424987 -191903360 + L2 LINE L2 2707 3312 -1 502 219 18 0 chr4 10425798 10425912 -191902435 - LTR33A LTR ERVL -6 517 402 468 203 472 8 chr4 10425908 10426262 -191902085 - LTR50 LTR ERVL -277 518 1 * 186 133 0 0 chr4 10426283 10426313 -191902034 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 302 274 0 0 chr4 10426320 10426393 -191901954 + HsTC2 DNA Tc2 1828 1900 0 311 311 66 19 chr4 10426540 10426646 -191901701 + MIR SINE MIR 34 144 -64 707 295 5 34 chr4 10426649 10426809 -191901538 - MIR SINE MIR -2 260 106 2300 123 0 0 chr4 10426809 10427117 -191901230 - AluSx SINE Alu -4 308 1 707 295 5 34 chr4 10427117 10427163 -191901184 - MIR SINE MIR -156 106 60 994 144 0 0 chr4 10427408 10427554 -191900793 + AluSg/x SINE Alu 166 311 -1 1433 291 35 22 chr4 10427554 10428015 -191900332 - L2 LINE L2 -412 2902 2436 290 330 193 5 chr4 10428464 10428682 -191899665 + L3 LINE CR1 1131 1389 -188 1581 273 111 6 chr4 10428718 10429267 -191899080 + L2 LINE L2 899 1505 -1809 808 307 175 15 chr4 10429272 10429900 -191898447 + L2 LINE L2 2577 3311 -2 325 405 76 0 chr4 10430018 10430176 -191898171 - L2 LINE L2 -1 3271 3102 775 255 113 20 chr4 10430637 10430990 -191897357 + LTR16A1 LTR ERVL 58 443 -14 329 167 56 22 chr4 10431179 10431269 -191897078 + MLT1K LTR MaLR 338 430 -158 1544 179 73 20 chr4 10431289 10431630 -191896717 + MLT1B LTR MaLR 32 390 0 235 281 237 7 chr4 10431799 10431934 -191896413 + MLT1K LTR MaLR 10 175 -413 1122 175 53 10 chr4 10432018 10432224 -191896123 - MER20 DNA MER1_type 0 219 5 627 217 111 32 chr4 10432309 10432526 -191895821 + MLT1K LTR MaLR 338 571 -17 202 316 38 25 chr4 10432562 10432641 -191895706 - MIR SINE MIR -70 192 113 386 237 41 10 chr4 10432754 10432851 -191895496 + L2 LINE L2 3173 3272 0 224 343 127 30 chr4 10432933 10433074 -191895273 + L3 LINE CR1 1293 1454 -123 243 103 0 0 chr4 10433074 10433113 -191895234 + (ATG)n Simple_repeat Simple_repeat 3 41 0 224 343 127 30 chr4 10433113 10433137 -191895210 + L3 LINE CR1 1454 1474 -103 364 329 105 0 chr4 10433160 10433312 -191895035 - MIR SINE MIR -49 213 46 189 325 0 26 chr4 10433332 10433409 -191894938 + L3 LINE CR1 1400 1474 -103 198 191 0 0 chr4 10434238 10434280 -191894067 + T-rich Low_complexity Low_complexity 1 42 0 272 289 67 81 chr4 10434305 10434465 -191893882 - MIR SINE MIR -61 147 4 203 369 10 10 chr4 10434758 10434861 -191893486 + MIR SINE MIR 38 140 -68 588 241 25 44 chr4 10435435 10435593 -191892754 - MIR SINE MIR -74 188 34 400 278 18 41 chr4 10435847 10436016 -191892331 + L1MC4a LINE L1 5697 5861 -1947 486 292 73 36 chr4 10436027 10436356 -191891991 + LTR33 LTR ERVL 10 350 -171 354 224 56 28 chr4 10436795 10436902 -191891445 - L1M4 LINE L1 -968 5178 5069 359 252 165 0 chr4 10436935 10437038 -191891309 - MIR SINE MIR -62 146 27 2135 129 0 0 chr4 10437119 10437406 -191890941 + AluSx SINE Alu 5 291 -21 796 230 79 3 chr4 10437455 10437797 -191890550 + L1ME3A LINE L1 5101 5462 -712 192 241 37 19 chr4 10437825 10437879 -191890468 + MER5A DNA MER1_type 132 186 -3 395 267 205 2 chr4 10437982 10438134 -191890213 + MIR SINE MIR 17 192 -37 783 315 57 34 chr4 10438203 10438647 -191889700 + L1ME3A LINE L1 5497 5951 -219 1160 164 0 60 chr4 10438787 10439019 -191889328 - AluJo SINE Alu -54 258 41 1063 296 70 52 chr4 10439188 10439760 -191888587 - L2 LINE L2 -337 2977 2396 212 293 253 0 chr4 10439945 10440044 -191888303 - L2 LINE L2 -4 3268 3145 487 325 105 34 chr4 10440056 10440474 -191887873 - MLT1L LTR MaLR 0 615 168 340 269 22 15 chr4 10440494 10440628 -191887719 + L2 LINE L2 2370 2504 -810 897 167 37 60 chr4 10440644 10440860 -191887487 + MLT1C LTR MaLR 1 211 -256 * 1829 181 5 73 chr4 10440856 10441264 -191887083 + MLT1B LTR MaLR 11 390 0 185 197 30 76 chr4 10441283 10441349 -191886998 + L2 LINE L2 2553 2615 -699 710 268 97 64 chr4 10441483 10441968 -191886379 + LTR67 LTR ERVL 3 503 -54 245 263 202 0 chr4 10442013 10442112 -191886235 - MIR SINE MIR -59 203 85 2199 126 0 0 chr4 10442268 10442570 -191885777 + AluSx SINE Alu 1 302 -10 218 304 174 31 chr4 10442572 10442733 -191885614 - L2 LINE L2 -10 3262 3079 494 330 60 14 chr4 10443549 10443764 -191884583 - MIR SINE MIR -26 236 12 948 293 78 5 chr4 10444022 10444404 -191883943 + MLT1J2 LTR MaLR 41 450 0 224 394 0 0 chr4 10444796 10444867 -191883480 - L2 LINE L2 -94 3178 3108 294 327 72 0 chr4 10445133 10445286 -191883061 - L2 LINE L2 -557 2757 2594 192 272 103 87 chr4 10445384 10445568 -191882779 + MIR3 SINE MIR 10 196 -12 * 721 242 101 0 chr4 10445540 10445718 -191882629 + MIR SINE MIR 53 248 -14 2657 192 18 38 chr4 10446327 10446900 -191881447 + MER68 LTR ERV1 1 561 -1 301 308 77 34 chr4 10447543 10447660 -191880687 + MIR SINE MIR 128 249 -13 393 330 100 10 chr4 10448137 10448337 -191880010 + L1ME4a LINE L1 5700 5917 -204 313 290 136 56 chr4 10448367 10448529 -191879818 + MIR SINE MIR 18 192 -70 1147 252 101 39 chr4 10449725 10450240 -191878107 + MER21B LTR ERV1 133 679 -184 195 239 43 0 chr4 10450275 10450321 -191878026 - L2 LINE L2 -34 3238 3191 213 238 0 0 chr4 10451364 10451406 -191876941 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 815 236 32 18 chr4 10451650 10451870 -191876477 + MER58A DNA MER1_type 1 223 -1 1153 270 104 40 chr4 10452093 10452740 -191875607 - L2 LINE L2 0 3313 2615 255 320 39 0 chr4 10453197 10453275 -191875072 + MIR SINE MIR 110 190 -72 205 335 77 29 chr4 10454322 10454492 -191873855 + L2 LINE L2 3034 3211 -61 583 255 28 31 chr4 10455002 10455166 -191873181 + MIR SINE MIR 3 164 -61 989 213 84 17 chr4 10455230 10455526 -191872821 + MLT1A2 LTR MaLR 39 354 -20 691 246 54 35 chr4 10455967 10456170 -191872177 + MIR SINE MIR 35 241 -21 268 99 70 0 chr4 10456432 10456489 -191871858 + MER4D LTR ERV1 555 829 -41 334 262 47 9 chr4 10456734 10456841 -191871506 + L2 LINE L2 2965 3075 -197 2007 134 13 19 chr4 10457960 10458244 -191870103 + AluSx SINE Alu 1 284 -28 396 0 0 0 chr4 10458244 10458288 -191870059 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 2007 134 13 19 chr4 10458288 10458316 -191870031 + AluSx SINE Alu 284 311 -1 206 297 249 16 chr4 10459136 10459321 -191869026 - MIR SINE MIR -29 233 6 318 26 0 0 chr4 10459732 10459771 -191868576 + (TG)n Simple_repeat Simple_repeat 2 40 0 374 276 33 30 chr4 10459946 10460112 -191868235 + MIR SINE MIR 19 183 -63 2126 122 10 0 chr4 10461540 10461836 -191866511 - AluSx SINE Alu -13 299 1 301 303 14 15 chr4 10461836 10461966 -191866381 + MIR SINE MIR 64 189 -65 197 116 0 93 chr4 10463111 10463154 -191865193 + MIR SINE MIR 108 146 -116 2147 149 19 8 chr4 10463967 10464342 -191864005 + MLT1B LTR MaLR 5 383 -7 370 279 37 63 chr4 10464954 10465144 -191863203 + MIR SINE MIR 75 259 -3 579 274 139 58 chr4 10465940 10466062 -191862285 + L2 LINE L2 1602 1713 -1601 3280 185 19 36 chr4 10466062 10466459 -191861888 + L1MB5 LINE L1 5499 5880 -294 2352 88 3 0 chr4 10466459 10466763 -191861584 + AluSq SINE Alu 1 296 -17 3280 185 19 36 chr4 10466763 10467053 -191861294 + L1MB5 LINE L1 5880 6174 0 579 274 139 58 chr4 10467053 10467240 -191861107 + L2 LINE L2 1713 1936 -1378 1071 217 104 4 chr4 10467415 10467707 -191860640 - L1MA4 LINE L1 -1 6299 5979 440 321 55 14 chr4 10468105 10468323 -191860024 + MIR SINE MIR 20 246 -16 270 308 33 11 chr4 10468911 10469002 -191859345 - MER5A DNA MER1_type -42 147 55 1856 97 3 74 chr4 10469237 10469632 -191858715 - AluSq SINE Alu 0 313 2 1364 159 64 0 chr4 10469786 10470050 -191858297 + L1MA7 LINE L1 6010 6290 -1 1359 158 7 62 chr4 10470059 10470350 -191857997 + L1MC1 LINE L1 6039 6313 -20 211 349 45 8 chr4 10470486 10470618 -191857729 - MIR SINE MIR -15 247 111 290 277 194 55 chr4 10471704 10472069 -191856278 - L2 LINE L2 -1 3312 2897 191 356 78 0 chr4 10472571 10472686 -191855661 + MIR SINE MIR 85 208 -54 589 295 46 9 chr4 10474252 10474469 -191853878 + MIR SINE MIR 21 245 -17 270 276 0 81 chr4 10474475 10474598 -191853749 - MIR SINE MIR -76 132 19 2492 185 32 32 chr4 10475255 10475463 -191852884 + MLT2B3 LTR ERVL 1 208 -346 202 29 57 0 chr4 10475463 10475498 -191852849 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 2492 185 32 32 chr4 10475498 10475791 -191852556 + MLT2B3 LTR ERVL 207 502 -52 225 0 0 0 chr4 10475791 10475816 -191852531 + (TCCA)n Simple_repeat Simple_repeat 3 27 0 354 341 24 24 chr4 10475925 10476095 -191852252 + MIR SINE MIR 53 222 -40 424 297 118 11 chr4 10476232 10476495 -191851852 - L1ME4a LINE L1 -225 5896 5606 1171 208 140 39 chr4 10476790 10477098 -191851249 - L1MB7 LINE L1 -9 6175 5837 589 222 17 39 chr4 10477184 10477364 -191850983 + MER96B DNA MER1_type? 1 176 -241 1915 122 3 11 chr4 10477364 10477680 -191850667 + AluSx SINE Alu 1 314 0 2188 104 3 3 chr4 10477922 10478231 -191850116 + AluSx SINE Alu 1 309 -3 663 270 38 5 chr4 10478588 10478799 -191849548 - MER58A DNA MER1_type -3 221 4 427 270 107 83 chr4 10479105 10479527 -191848820 + L2 LINE L2 2322 2753 -561 180 176 0 0 chr4 10479560 10479594 -191848753 + GA-rich Low_complexity Low_complexity 3 36 0 298 305 13 93 chr4 10479728 10479879 -191848468 + L2 LINE L2 2905 3043 -229 312 300 204 5 chr4 10480182 10480358 -191847989 - MIR SINE MIR -49 213 1 2208 81 13 7 chr4 10481714 10482021 -191846326 + AluY SINE Alu 1 309 -2 8937 202 27 16 chr4 10482021 10484744 -191843603 + L1MB2 LINE L1 3368 6131 -40 1968 101 0 7 chr4 10484744 10485097 -191843250 - AluSx SINE Alu 0 351 1 8937 202 27 16 chr4 10485097 10485138 -191843209 + L1MB2 LINE L1 6131 6170 -1 1748 133 87 70 chr4 10485610 10485730 -191842617 - THE1C LTR MaLR 0 375 258 2251 109 0 0 chr4 10485730 10486042 -191842305 - AluSx SINE Alu 0 312 1 1748 133 87 70 chr4 10486042 10486290 -191842057 - THE1C LTR MaLR -117 258 1 1669 183 85 40 chr4 10486322 10486769 -191841578 + MLT1C LTR MaLR 1 467 0 1575 239 22 71 chr4 10487035 10487582 -191840765 + MLT2B1 LTR ERVL 1 520 0 512 271 53 16 chr4 10487762 10487950 -191840397 + LTR16A1 LTR ERVL 45 239 -218 890 339 37 3 chr4 10487986 10488364 -191839983 + ERVL LTR ERVL 1908 2298 -3466 725 332 35 12 chr4 10488410 10488729 -191839618 + ERVL LTR ERVL 2266 2591 -2405 257 296 133 56 chr4 10488753 10489145 -191839202 + L2 LINE L2 2244 2665 -649 355 188 129 24 chr4 10489204 10489289 -191839058 + L2 LINE L2 3200 3293 -20 301 295 16 33 chr4 10489663 10489785 -191838562 - L3 LINE CR1 -718 859 740 536 292 81 0 chr4 10489922 10490083 -191838264 + MIR SINE MIR 68 241 -21 4045 201 41 15 chr4 10490106 10490908 -191837439 - MER21B LTR ERV1 -20 843 21 265 275 66 22 chr4 10490910 10491001 -191837346 - MER21B LTR ERV1 -757 106 12 363 326 17 28 chr4 10491215 10491393 -191836954 - L3 LINE CR1 -214 1363 1188 630 276 131 75 chr4 10491402 10491705 -191836642 + L2 LINE L2 2433 2717 -596 2140 122 0 0 chr4 10491705 10492016 -191836331 + AluSx SINE Alu 1 311 -1 630 276 131 75 chr4 10492016 10492459 -191835888 + L2 LINE L2 2717 3219 -94 359 236 0 46 chr4 10492549 10492676 -191835671 + MLT1D LTR MaLR 19 91 -414 1964 70 0 12 chr4 10492676 10492935 -191835412 + AluY SINE Alu 32 287 -24 1327 174 53 91 chr4 10492959 10493041 -191835306 + MLT1D LTR MaLR 120 204 -301 1475 153 53 7 chr4 10493041 10493322 -191835025 + AluJb SINE Alu 11 304 -8 1327 174 53 91 chr4 10493322 10493635 -191834712 + MLT1D LTR MaLR 204 500 -5 244 278 56 0 chr4 10494307 10494379 -191833968 - HsTC2 DNA Tc2 -1810 88 13 902 143 0 0 chr4 10494771 10494904 -191833443 + FLAM_C SINE Alu 1 133 -10 1160 152 35 0 chr4 10495021 10495219 -191833128 - MER20 DNA MER1_type -1 218 14 2587 94 14 0 chr4 10495348 10495698 -191832649 + THE1A LTR MaLR 1 355 0 1607 189 61 66 chr4 10495762 10495790 -191832557 - MLT2D LTR ERVL -8 406 379 231 36 0 0 chr4 10495790 10495818 -191832529 + (TG)n Simple_repeat Simple_repeat 2 29 0 1607 189 61 66 chr4 10495818 10495854 -191832493 - MLT2D LTR ERVL -35 379 344 1629 182 0 7 chr4 10495854 10496150 -191832197 + AluJb SINE Alu 1 294 -18 1607 189 61 66 chr4 10496150 10496492 -191831855 - MLT2D LTR ERVL -70 344 1 367 269 64 35 chr4 10496619 10496790 -191831557 - MER5B DNA MER1_type -2 176 1 566 253 89 0 chr4 10497116 10497262 -191831085 - MIR SINE MIR -16 246 88 539 332 67 39 chr4 10497326 10497757 -191830590 + L1ME LINE L1 4153 4595 -1551 1426 213 138 79 chr4 10498134 10498283 -191830064 + MLT1E LTR MaLR 56 195 -398 1935 116 20 7 chr4 10498283 10498577 -191829770 + AluSx SINE Alu 1 298 -14 1426 213 138 79 chr4 10498577 10498933 -191829414 + MLT1E LTR MaLR 195 591 -2 271 283 26 71 chr4 10498936 10499049 -191829298 - L1ME3A LINE L1 -100 6070 5963 195 100 0 0 chr4 10499365 10499395 -191828952 + (CA)n Simple_repeat Simple_repeat 1 30 0 2213 121 0 0 chr4 10499777 10500090 -191828257 + AluSq SINE Alu 1 313 0 333 320 93 16 chr4 10500171 10500365 -191827982 + L1ME LINE L1 5495 5703 -418 243 238 24 48 chr4 10500580 10500664 -191827683 + MIR SINE MIR 51 132 -130 2170 222 55 18 chr4 10501265 10501810 -191826537 - L1ME3 LINE L1 -20 6142 5578 2144 138 49 42 chr4 10501840 10502168 -191826179 - L1MA5 LINE L1 -2 6298 5965 2081 120 10 0 chr4 10502168 10502476 -191825871 - AluY SINE Alu 0 311 1 2144 138 49 42 chr4 10502476 10502575 -191825772 - L1MA5 LINE L1 -335 5965 5868 1401 142 32 24 chr4 10502575 10502822 -191825525 + L1MA5 LINE L1 5619 5867 -433 982 168 0 0 chr4 10503940 10504101 -191824246 + FRAM SINE Alu 2 162 -14 228 265 10 82 chr4 10504120 10504218 -191824129 + L2 LINE L2 3220 3310 -3 1062 187 111 29 chr4 10504218 10504278 -191824069 + MER34 LTR ERV1 27 81 -461 2250 78 0 41 chr4 10504278 10504598 -191823749 + AluY SINE Alu 1 307 -4 1062 187 111 29 chr4 10504598 10504988 -191823359 + MER34 LTR ERV1 81 542 0 864 144 46 40 chr4 10505161 10505334 -191823013 + MER20 DNA MER1_type 44 217 -2 2024 122 6 10 chr4 10505444 10505756 -191822591 + AluSx SINE Alu 1 311 -1 862 170 0 0 chr4 10505788 10505929 -191822418 + FRAM SINE Alu 1 140 -36 269 225 25 12 chr4 10506238 10506318 -191822029 + GA-rich Low_complexity Low_complexity 2 82 0 32 43 0 0 chr4 10507800 10507846 -191820501 + AT_rich Low_complexity Low_complexity 1 46 0 259 232 73 24 chr4 10508370 10508452 -191819895 + L2 LINE L2 3030 3115 -157 233 326 43 0 chr4 10508587 10508679 -191819668 - MIR SINE MIR -1 261 166 1143 118 16 11 chr4 10508680 10508866 -191819481 + AluSc SINE Alu 111 297 -12 459 286 56 5 chr4 10509250 10509446 -191818901 + LTR33 LTR ERVL 297 502 -19 196 286 0 0 chr4 10509601 10509643 -191818704 - MIR SINE MIR -150 112 71 263 268 61 24 chr4 10509643 10509725 -191818622 + MIR SINE MIR 120 204 -58 579 146 133 26 chr4 10509745 10509896 -191818451 + MER53 DNA DNA 13 179 -10 575 167 108 25 chr4 10509899 10510019 -191818328 - FLAM_A SINE Alu -6 136 7 219 361 17 25 chr4 10510228 10510347 -191818000 - MIR SINE MIR -71 137 20 1684 226 179 16 chr4 10511152 10511799 -191816548 + Charlie1 DNA MER1_type 1978 2730 -31 203 152 0 0 chr4 10512070 10512103 -191816244 + (CA)n Simple_repeat Simple_repeat 1 33 0 352 326 34 7 chr4 10513710 10513857 -191814490 - MIR3 SINE MIR -15 193 43 420 167 176 0 chr4 10515375 10515477 -191812870 - MER20 DNA MER1_type -34 185 66 429 195 150 0 chr4 10516559 10516672 -191811675 + Charlie5 DNA MER1_type 2476 2605 -7 212 235 20 0 chr4 10520517 10520568 -191807779 + MIR SINE MIR 93 144 -64 289 198 25 12 chr4 10520633 10520714 -191807633 - MIR SINE MIR -129 133 52 345 253 247 29 chr4 10520789 10520963 -191807384 + MIR SINE MIR 46 257 -5 215 200 0 0 chr4 10521351 10521391 -191806956 + G-rich Low_complexity Low_complexity 1 40 0 239 265 88 10 chr4 10522327 10522429 -191805918 - MIR SINE MIR -44 218 109 294 357 0 0 chr4 10523629 10523727 -191804620 + MIR SINE MIR 51 148 -60 257 292 56 11 chr4 10525413 10525502 -191802845 + MER5B DNA MER1_type 86 178 0 2043 100 7 0 chr4 10528832 10529103 -191799244 - AluY SINE Alu -38 273 1 1070 225 175 22 chr4 10529540 10529945 -191798402 + MLT1C LTR MaLR 1 467 0 393 324 95 0 chr4 10539917 10540127 -191788220 + MIR SINE MIR 13 242 -20 276 268 111 3 chr4 10541917 10542015 -191786332 - MIR SINE MIR -62 146 57 937 201 186 52 chr4 10542015 10542364 -191785983 + MSTD LTR MaLR 1 396 0 276 268 111 3 chr4 10542364 10542407 -191785940 - MIR SINE MIR -151 57 20 216 97 0 0 chr4 10542634 10542665 -191785682 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 513 32 0 0 chr4 10542958 10543021 -191785326 + (CA)n Simple_repeat Simple_repeat 1 63 0 452 105 232 17 chr4 10543203 10543324 -191785023 + MER30 DNA MER1_type 1 154 -76 1902 32 9 0 chr4 10543498 10543719 -191784628 - AluY SINE Alu -88 223 1 279 45 0 0 chr4 10545176 10545220 -191783127 - AluY SINE Alu 0 300 257 1940 54 0 0 chr4 10545220 10545441 -191782906 - AluY SINE Alu -90 221 1 381 58 0 0 chr4 10545478 10545530 -191782817 + (CA)n Simple_repeat Simple_repeat 2 53 0 323 290 65 16 chr4 10546994 10547118 -191781229 + MIR SINE MIR 23 152 -110 385 148 10 138 chr4 10547555 10547751 -191780596 - AluSp SINE Alu -12 291 121 412 252 122 63 chr4 10548638 10548860 -191779487 - MIR SINE MIR 0 262 28 30 0 0 0 chr4 10549974 10550004 -191778343 + AT_rich Low_complexity Low_complexity 1 30 0 302 315 36 30 chr4 10550135 10550300 -191778047 + MIR SINE MIR 97 262 0 333 318 9 37 chr4 10553426 10553533 -191774814 - L1ME LINE L1 -425 5696 5593 4265 225 53 35 chr4 10556822 10558375 -191769972 + L1 LINE L1 2273 3853 -2293 21 36 0 0 chr4 10558645 10558673 -191769674 + AT_rich Low_complexity Low_complexity 1 28 0 404 205 0 13 chr4 10558958 10559036 -191769311 + L1M3e LINE L1 189 265 -6765 1906 235 129 50 chr4 10559041 10560327 -191768020 + L1M3e LINE L1 1110 2490 -4547 21 0 0 0 chr4 10561239 10561260 -191767087 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr4 10561428 10561468 -191766879 + AT_rich Low_complexity Low_complexity 1 40 0 1286 222 136 81 chr4 10561877 10562026 -191766321 + MLT1E LTR MaLR 56 195 -398 2069 119 20 7 chr4 10562026 10562320 -191766027 + AluSx SINE Alu 1 298 -14 1286 222 136 81 chr4 10562320 10562678 -191765669 + MLT1E LTR MaLR 195 591 -2 23 0 0 0 chr4 10562822 10562845 -191765502 + AT_rich Low_complexity Low_complexity 1 23 0 31 0 0 0 chr4 10563069 10563100 -191765247 + AT_rich Low_complexity Low_complexity 1 31 0 668 178 46 46 chr4 10564051 10564225 -191764122 + MER20 DNA MER1_type 44 217 -2 1120 115 14 0 chr4 10564335 10564483 -191763864 + AluSq/x SINE Alu 1 150 -163 2552 241 58 22 chr4 10566173 10566959 -191761388 + L1ME1 LINE L1 5348 6162 -4 208 310 62 18 chr4 10569084 10569197 -191759150 + L2 LINE L2 2994 3111 -161 345 263 72 40 chr4 10569440 10569592 -191758755 - MIR SINE MIR -70 192 36 240 205 55 142 chr4 10570838 10570965 -191757382 + L2 LINE L2 2937 3052 -220 241 226 24 119 chr4 10571171 10571255 -191757092 - MER20 DNA MER1_type -143 76 1 248 207 52 0 chr4 10572421 10572479 -191755868 - MER20 DNA MER1_type -17 202 142 884 298 127 36 chr4 10573108 10573402 -191754945 - L2 LINE L2 -5 3308 3042 1838 157 10 19 chr4 10573402 10573714 -191754633 + AluSx SINE Alu 1 309 -3 884 298 127 36 chr4 10573714 10574263 -191754084 - L2 LINE L2 -271 3042 2316 219 184 0 0 chr4 10575279 10575317 -191753030 - MIR SINE MIR -60 148 111 263 229 27 64 chr4 10575968 10576057 -191752290 - MIR SINE MIR -41 167 80 599 111 0 0 chr4 10576123 10576213 -191752134 - 5S rRNA rRNA -31 90 1 42 100 0 0 chr4 10576833 10576973 -191751374 + GC_rich Low_complexity Low_complexity 1 140 0 23 0 0 0 chr4 10577312 10577335 -191751012 + GC_rich Low_complexity Low_complexity 1 23 0 494 185 127 25 chr4 10580108 10580265 -191748082 - LTR32 LTR ERVL 0 471 299 1106 214 139 8 chr4 10584261 10584621 -191743726 - MLT1C LTR MaLR 0 467 61 7154 74 46 2 chr4 10587705 10588633 -191739714 - LTR5 LTR ERVK 0 969 1 248 132 0 0 chr4 10589404 10589442 -191738905 + MLT2A1 LTR ERVL 342 379 -65 * 1735 93 81 51 chr4 10589438 10589771 -191738576 - MLT2A1 LTR ERVL -101 343 1 345 211 40 0 chr4 10597884 10597960 -191730387 - L1MCa LINE L1 -5051 1513 1435 269 194 222 28 chr4 10598047 10598155 -191730192 - L1MCa LINE L1 -5597 448 320 446 244 224 10 chr4 10598506 10598998 -191729349 - L1MB3 LINE L1 -8 6175 5583 2000 121 104 27 chr4 10602918 10603330 -191725017 - MLT2A1 LTR ERVL 0 444 1 1249 204 67 30 chr4 10606699 10606968 -191721379 + AluSx SINE Alu 5 283 -29 629 227 89 39 chr4 10608573 10608776 -191719571 - MER20 DNA MER1_type 0 219 7 1631 184 117 34 chr4 10629787 10630259 -191698088 - MER9 LTR ERVK 0 511 1 1463 217 93 15 chr4 10630262 10630837 -191697510 - HERVK9 LTR ERVK -3 7352 5635 339 239 100 80 chr4 10630838 10631089 -191697258 - HERVK9 LTR ERVK -686 4576 4321 12268 165 55 15 chr4 10631180 10633873 -191694474 - HERVK9 LTR ERVK -281 5635 3042 9648 163 47 17 chr4 10633871 10635836 -191692511 - HERVK9 LTR ERVK -4125 1791 1 * 1355 209 123 36 chr4 10635836 10636306 -191692041 - MER9 LTR ERVK 0 511 1 354 256 131 50 chr4 10638481 10638641 -191689706 - MER20 DNA MER1_type -42 177 5 274 310 60 25 chr4 10640008 10640208 -191688139 - ERVL LTR ERVL -2988 2776 2570 180 0 0 0 chr4 10642217 10642237 -191686110 + (T)n Simple_repeat Simple_repeat 1 20 0 1868 216 90 5 chr4 10644231 10644675 -191683672 - L1PA15 LINE L1 -16 6149 5668 2116 185 40 26 chr4 10644676 10645130 -191683217 - MER66B LTR ERV1 0 486 27 988 149 113 32 chr4 10645136 10645357 -191682990 - L1PA15 LINE L1 -494 5671 5433 489 262 143 6 chr4 10649685 10649853 -191678494 - MER20 DNA MER1_type -7 212 22 571 301 108 34 chr4 10650188 10650781 -191677566 - ERVL LTR ERVL -1708 3946 3336 433 276 140 37 chr4 10651107 10651549 -191676798 - ERVL LTR ERVL -2577 2908 2409 189 0 0 0 chr4 10651597 10651618 -191676729 + (TA)n Simple_repeat Simple_repeat 1 21 0 491 285 108 24 chr4 10656218 10656506 -191671841 - LTR16A LTR ERVL -5 445 134 317 89 0 0 chr4 10658159 10658204 -191670143 - L1P4 LINE L1 -408 5760 5716 2491 148 81 53 chr4 10658218 10658723 -191669624 - LTR25 LTR ERV1 0 794 276 6384 77 45 4 chr4 10658723 10659744 -191668603 - L1PA7 LINE L1 -23 6131 5076 1379 157 86 8 chr4 10659744 10659978 -191668369 - LTR25 LTR ERV1 -506 288 29 213 39 0 0 chr4 10659978 10660004 -191668343 + (TTCCC)n Simple_repeat Simple_repeat 3 28 0 1379 157 86 8 chr4 10660004 10660036 -191668311 - LTR25 LTR ERV1 -765 29 1 226 171 0 0 chr4 10660038 10660073 -191668274 - L1P4 LINE L1 -463 5702 5668 972 229 366 6 chr4 10660074 10660424 -191667923 - MER66A LTR ERV1 0 478 3 947 194 107 0 chr4 10660425 10660641 -191667706 - L1P4 LINE L1 -494 5671 5433 354 235 168 7 chr4 10664399 10664548 -191663799 - MER20 DNA MER1_type -37 182 10 291 295 77 32 chr4 10668492 10668658 -191659689 - ERVL LTR ERVL -2236 3418 3265 221 0 35 0 chr4 10672956 10672985 -191655362 + (TA)n Simple_repeat Simple_repeat 2 31 0 289 335 51 23 chr4 10674522 10674698 -191653649 - LTR16A LTR ERVL -34 416 236 3819 94 69 19 chr4 10675038 10676017 -191652330 - MER11A LTR ERVK -4 1262 1 527 244 85 30 chr4 10679118 10679319 -191649028 - ERVL LTR ERVL -892 4638 4427 416 304 45 93 chr4 10679318 10679630 -191648717 - ERVL LTR ERVL -1240 4290 3994 * 385 286 76 8 chr4 10679635 10679754 -191648593 - ERVL LTR ERVL -1648 3882 3756 359 277 42 38 chr4 10679805 10680015 -191648332 - ERVL LTR ERVL -1338 3428 1490 633 260 108 50 chr4 10681731 10682073 -191646274 - MLT1A1 LTR MaLR -3 362 1 680 243 112 29 chr4 10683026 10683302 -191645045 - LTR16A LTR ERVL -51 399 101 583 353 78 20 chr4 10684193 10684983 -191643364 - ERVL LTR ERVL -1167 4597 3423 391 319 86 5 chr4 10685104 10685314 -191643033 - ERVL LTR ERVL -2211 3553 3327 536 317 91 5 chr4 10685461 10685682 -191642665 - LTR16A LTR ERVL -159 291 52 251 322 16 16 chr4 10689408 10689529 -191638818 - L2 LINE L2 -1216 2098 1978 1038 296 98 10 chr4 10689975 10690384 -191637963 + LTR16A LTR ERVL 1 445 -5 294 216 0 0 chr4 10690880 10690931 -191637416 + ERVL LTR ERVL 3406 3456 -2308 258 296 80 0 chr4 10690925 10691013 -191637334 - ERVL LTR ERVL -2350 3414 3320 * 374 307 83 21 chr4 10691107 10691299 -191637048 - ERVL LTR ERVL -2582 3182 2979 373 267 97 28 chr4 10691434 10691610 -191636737 - ERVL LTR ERVL -2957 2807 2620 423 112 209 45 chr4 10691923 10692057 -191636290 - L1MB1 LINE L1 0 6168 6013 817 214 128 95 chr4 10693140 10693477 -191634870 - MLT1A1 LTR MaLR -17 348 1 988 237 169 11 chr4 10693714 10693992 -191634355 - MLT2B2 LTR ERVL -2 513 192 2371 240 186 44 chr4 10694815 10696049 -191632298 - L1M4 LINE L1 -5120 1422 14 1621 141 101 26 chr4 10697651 10698156 -191630191 - MLT2A2 LTR ERVL 0 554 1 231 287 0 23 chr4 10699619 10699706 -191628641 - MLT1E2 LTR MaLR -537 89 5 242 283 40 50 chr4 10700369 10700468 -191627879 + MSTD LTR MaLR 204 301 -95 1605 199 99 67 chr4 10700985 10701732 -191626615 - MER4C LTR ERV1 0 667 34 340 209 0 47 chr4 10702039 10702125 -191626222 - MER4C LTR ERV1 -383 82 1 2942 124 44 0 chr4 10702271 10702705 -191625642 - MLT2A2 LTR ERVL 0 453 1 365 295 122 38 chr4 10703583 10704034 -191624313 - MLT1D LTR MaLR -10 495 7 2874 77 64 5 chr4 10705329 10705721 -191622626 - LTR8 LTR ERV1 -3 688 274 539 96 72 0 chr4 10705720 10705803 -191622544 - LTR8 LTR ERV1 -602 89 1 * 649 252 81 14 chr4 10706035 10706245 -191622102 - PABL_B LTR ERV1 0 667 444 225 301 69 94 chr4 10706513 10706716 -191621631 - PABL_B LTR ERV1 -469 198 1 1255 249 129 12 chr4 10706927 10707353 -191620994 - MER31A LTR ERV1 -9 476 1 1938 178 97 7 chr4 10707423 10707844 -191620503 - LOR1b LTR ERV1 0 461 3 6345 65 50 0 chr4 10708545 10709619 -191618728 - L1PA7 LINE L1 -1 6153 5042 225 88 0 0 chr4 10709619 10709653 -191618694 + L1PA7 LINE L1 4976 5009 -1137 503 96 106 39 chr4 10710647 10710751 -191617596 - L1P LINE L1 -945 5201 5091 1880 156 71 6 chr4 10713392 10713744 -191614603 - THE1C LTR MaLR 0 375 1 783 181 0 0 chr4 10725903 10726041 -191602306 + L1PA8 LINE L1 6011 6148 -24 598 244 62 12 chr4 10727369 10727529 -191600818 - MER31A LTR ERV1 -13 472 305 652 171 79 7 chr4 10727532 10727672 -191600675 - MER31A LTR ERV1 -335 150 1 2536 191 71 12 chr4 10735561 10736137 -191592210 - LTR38B LTR ERV1 0 610 1 1160 89 0 4 chr4 10739731 10739957 -191588390 - L1PA8 LINE L1 -1 6171 5869 5989 24 3 0 chr4 10747944 10748623 -191579724 - L1PA3 LINE L1 -4 6151 5471 1132 249 63 9 chr4 10749379 10749712 -191578635 - MER31A LTR ERV1 -134 351 1 186 128 0 0 chr4 10750836 10750875 -191577472 + (TA)n Simple_repeat Simple_repeat 1 39 0 373 222 128 128 chr4 10752061 10752467 -191575880 - MLT1D LTR MaLR -87 418 13 234 0 0 0 chr4 10752547 10752573 -191575774 + (TGGGGG)n Simple_repeat Simple_repeat 2 27 0 3329 101 13 0 chr4 10754540 10754994 -191573353 + LTR46 LTR ERV1 1 460 0 1201 189 231 37 chr4 10758241 10758669 -191569678 - MER9 LTR ERVK 0 511 1 23267 174 41 19 chr4 10758669 10763798 -191564549 - HERVK9 LTR ERVK 0 7316 1626 3091 183 40 36 chr4 10763794 10764693 -191563654 - HERVK9 LTR ERVK -5249 667 1 * 1706 204 69 35 chr4 10764693 10765184 -191563163 - MER9 LTR ERVK 0 511 4 2089 49 42 0 chr4 10770180 10770445 -191557902 + L1PA5 LINE L1 5879 6154 0 1486 197 141 5 chr4 10773713 10774089 -191554258 + MSTA LTR MaLR 1 427 -1 1778 187 114 3 chr4 10775441 10775826 -191552521 + MSTA LTR MaLR 1 428 0 1185 168 59 35 chr4 10777837 10778123 -191550224 - L1PB4 LINE L1 -5 6151 5859 417 276 104 8 chr4 10780537 10780671 -191547676 - MLT1D LTR MaLR -40 465 319 3278 158 50 10 chr4 10783536 10784151 -191544196 + MER51C LTR ERV1 1 640 0 988 176 10 10 chr4 10785599 10785792 -191542555 - AluSg/x SINE Alu 0 312 120 948 28 0 0 chr4 10785792 10785900 -191542447 - L1PA3 LINE L1 -3 6152 6045 1653 112 145 0 chr4 10785900 10786149 -191542198 - AluSx SINE Alu -27 285 1 534 242 113 38 chr4 10787720 10787906 -191540441 + MER2 DNA MER2_type 67 266 -79 7238 47 9 0 chr4 10792765 10793948 -191534399 - L1PA4 LINE L1 0 6155 4963 8335 27 9 1 chr4 10793948 10794934 -191533413 + L1PA4 LINE L1 3953 4946 -1200 593 287 61 72 chr4 10794934 10795391 -191532956 - MLT1D LTR MaLR -48 457 6 344 263 74 115 chr4 10797548 10798062 -191530285 - MLT1D LTR MaLR -8 497 5 241 338 28 21 chr4 10798074 10798219 -191530128 - LTR16C LTR ERVL -60 431 286 5709 90 42 1 chr4 10801629 10802439 -191525908 + L1PA8 LINE L1 5327 6169 -3 447 259 96 81 chr4 10809131 10809602 -191518745 - MLT1D LTR MaLR 0 505 28 229 303 49 42 chr4 10809633 10809775 -191518572 - LTR16C LTR ERVL -60 431 289 2236 84 48 0 chr4 10810429 10810739 -191517608 - L1PA7 LINE L1 0 6154 5830 1214 207 39 0 chr4 10813823 10814079 -191514268 + MER2 DNA MER2_type 2 267 -78 12914 121 73 11 chr4 10814396 10816649 -191511698 - L1PBa LINE L1 -3836 3026 571 422 271 118 14 chr4 10816655 10816799 -191511548 + MER50 LTR ERV1 10 168 -566 3060 130 20 130 chr4 10816935 10817595 -191510752 - LTR18B LTR ERVL -27 587 1 1026 228 128 9 chr4 10817595 10817913 -191510434 + MER50 LTR ERV1 293 649 -85 206 200 0 0 chr4 10868483 10868518 -191459829 + polypyrimidine Low_complexity Low_complexity 2 36 0 2380 61 10 17 chr4 10869109 10869405 -191458942 - AluY SINE Alu -17 294 1 2374 101 0 0 chr4 10870198 10870504 -191457843 - AluSx SINE Alu -6 306 1 1172 138 5 27 chr4 10871214 10871402 -191456945 - L1PB3 LINE L1 0 6154 5971 234 261 36 45 chr4 10872249 10872360 -191455987 + MLT1K LTR MaLR 470 579 -9 1666 196 79 9 chr4 10872442 10872474 -191455873 - MLT1A1 LTR MaLR 0 365 337 2215 109 3 3 chr4 10872474 10872778 -191455569 + AluSx SINE Alu 1 304 -8 1666 196 79 9 chr4 10872778 10873086 -191455261 - MLT1A1 LTR MaLR -28 337 1 691 308 24 28 chr4 10873179 10873426 -191454921 + MIR SINE MIR 5 250 -12 2228 120 0 3 chr4 10873899 10874198 -191454149 - AluSx SINE Alu -14 298 1 219 305 0 21 chr4 10874446 10874541 -191453806 + GA-rich Low_complexity Low_complexity 4 96 0 208 340 60 10 chr4 10874876 10874976 -191453371 + L2 LINE L2 3168 3272 0 819 235 132 80 chr4 10874991 10875505 -191452842 + MLT1C LTR MaLR 9 433 -34 195 261 0 0 chr4 10875968 10876014 -191452333 + MIR SINE MIR 217 262 0 2716 104 0 48 chr4 10876101 10876494 -191451853 + MER51B LTR ERV1 2 375 -2 588 264 14 0 chr4 10876521 10876661 -191451686 + MIR SINE MIR 55 196 -66 22 0 0 0 chr4 10876765 10876787 -191451560 + AT_rich Low_complexity Low_complexity 1 22 0 2362 85 3 0 chr4 10877353 10877647 -191450700 + AluSp SINE Alu 1 295 -18 2395 65 7 10 chr4 10877649 10877959 -191450388 + AluY SINE Alu 1 309 -2 408 198 12 0 chr4 10878112 10878198 -191450149 - MIR SINE MIR -4 258 172 4085 76 8 6 chr4 10878342 10878854 -191449493 + LTR10D LTR ERV1 1 513 0 2276 179 5 23 chr4 10879081 10879478 -191448869 - MLT1B LTR MaLR 0 390 1 288 264 14 0 chr4 10879561 10879633 -191448714 - MIR SINE MIR -123 139 67 364 262 110 14 chr4 10879720 10879838 -191448509 + MIR SINE MIR 74 210 -52 2097 111 28 0 chr4 10879838 10880126 -191448221 + AluSx SINE Alu 1 296 -16 364 262 110 14 chr4 10880126 10880152 -191448195 + MIR SINE MIR 210 232 -30 2197 122 0 0 chr4 10881084 10881395 -191446952 + AluSx SINE Alu 1 311 -1 2136 125 70 25 chr4 10881571 10881930 -191446417 - THE1C LTR MaLR 0 375 1 2087 122 3 3 chr4 10882619 10882913 -191445434 + AluSx SINE Alu 1 294 -18 244 207 52 7 chr4 10882918 10883053 -191445294 + (TA)n Simple_repeat Simple_repeat 1 141 0 2327 104 0 0 chr4 10883212 10883520 -191444827 - AluSg SINE Alu -2 308 1 2484 62 0 7 chr4 10883553 10883861 -191444486 - AluY SINE Alu -5 306 1 198 357 20 10 chr4 10883902 10884000 -191444347 - MIR SINE MIR -113 149 51 219 244 151 23 chr4 10884761 10884847 -191443500 + MIR SINE MIR 48 144 -118 1515 188 82 8 chr4 10884893 10885330 -191443017 - MLT1D LTR MaLR -1 504 1 994 215 195 23 chr4 10885601 10885945 -191442402 + MLT1I LTR MaLR 1 403 -6 236 338 75 30 chr4 10886095 10886228 -191442119 - MIR SINE MIR -73 189 51 2457 50 0 20 chr4 10886242 10886544 -191441803 - AluY SINE Alu -15 296 1 2246 102 3 0 chr4 10886557 10886850 -191441497 - AluSx SINE Alu -18 294 1 2007 125 0 56 chr4 10886859 10887221 -191441126 - AluSx SINE Alu 0 312 1 2462 74 0 3 chr4 10888265 10888564 -191439783 + AluSc SINE Alu 1 298 -11 2033 141 0 3 chr4 10888966 10889265 -191439082 - AluSq SINE Alu -15 298 1 686 270 20 5 chr4 10889683 10889887 -191438460 - MER113 DNA MER1_type? -110 411 205 2529 122 53 68 chr4 10889909 10890333 -191438014 + MER4E LTR ERV1 1 598 -181 1942 97 3 31 chr4 10890333 10890622 -191437725 + AluSq SINE Alu 24 304 -9 2529 122 53 68 chr4 10890622 10890796 -191437551 + MER4E LTR ERV1 598 773 -6 2728 169 38 17 chr4 10890798 10891324 -191437023 - L1MB3 LINE L1 -18 6165 5629 2259 118 0 0 chr4 10891673 10891970 -191436377 - AluSx SINE Alu -15 297 1 219 315 0 0 chr4 10892449 10892503 -191435844 + L2 LINE L2 3210 3263 -9 31 26 0 0 chr4 10892732 10892770 -191435577 + AT_rich Low_complexity Low_complexity 1 38 0 4966 16 0 9 chr4 10893264 10893836 -191434511 - L1PA2 LINE L1 0 6155 5617 4414 30 0 6 chr4 10893836 10894367 -191433980 + L1P LINE L1 4787 5314 -832 2387 78 0 3 chr4 10894394 10894689 -191433658 + AluSx SINE Alu 1 294 -18 203 399 38 27 chr4 10894697 10894880 -191433467 + L2 LINE L2 2748 2932 -382 2052 233 33 12 chr4 10894925 10895435 -191432912 + Charlie1 DNA MER1_type 1778 2298 -463 26 30 0 0 chr4 10895490 10895523 -191432824 + AT_rich Low_complexity Low_complexity 1 33 0 2245 110 7 0 chr4 10895991 10896290 -191432057 - AluSq SINE Alu -12 301 1 257 311 114 0 chr4 10896866 10896998 -191431349 + L1M4 LINE L1 2214 2360 -3786 23 33 0 0 chr4 10897836 10897866 -191430481 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr4 10899261 10899281 -191429066 + (TG)n Simple_repeat Simple_repeat 1 20 0 574 260 86 34 chr4 10899763 10900103 -191428244 + L1ME LINE L1 5438 5799 -363 2448 84 0 0 chr4 10901418 10901726 -191426621 + AluY SINE Alu 3 310 -1 2350 106 6 0 chr4 10901731 10902042 -191426305 + AluSq SINE Alu 1 313 0 232 325 145 0 chr4 10902054 10902171 -191426176 - L2 LINE L2 0 3313 3180 383 191 229 49 chr4 10902283 10902466 -191425881 - L2 LINE L2 -219 3053 2838 * 553 308 126 52 chr4 10902441 10903022 -191425325 - L2 LINE L2 -655 2659 2036 186 43 0 0 chr4 10903039 10903062 -191425285 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1839 154 43 3 chr4 10903182 10903481 -191424866 + AluJb SINE Alu 1 311 -1 231 180 0 0 chr4 10903481 10903521 -191424826 + GA-rich Low_complexity Low_complexity 10 52 0 294 29 0 0 chr4 10903524 10903559 -191424788 + (GGA)n Simple_repeat Simple_repeat 2 36 0 194 205 218 26 chr4 10903855 10903933 -191424414 - MIR SINE MIR -164 98 6 2309 65 10 3 chr4 10904514 10904804 -191423543 - AluY SINE Alu -19 292 1 530 284 144 32 chr4 10905705 10905990 -191422357 - L2 LINE L2 0 3313 2997 211 306 65 56 chr4 10906780 10906888 -191421459 - MIR3 SINE MIR -49 159 51 21 0 0 0 chr4 10907542 10907563 -191420784 + AT_rich Low_complexity Low_complexity 1 21 0 642 319 67 34 chr4 10907728 10908282 -191420065 + L1ME4a LINE L1 5506 6077 -44 192 343 101 0 chr4 10908778 10908877 -191419470 - MIR SINE MIR -68 140 32 250 240 31 0 chr4 10909422 10909518 -191418829 + CT-rich Low_complexity Low_complexity 1 99 0 187 246 41 98 chr4 10909569 10909691 -191418656 + MIR SINE MIR 17 131 -77 2263 96 3 34 chr4 10910857 10911180 -191417167 - AluSp SINE Alu 0 313 1 319 365 7 22 chr4 10911185 10911322 -191417025 - MIR3 SINE MIR -62 146 12 229 331 52 22 chr4 10911519 10911655 -191416692 + MIR SINE MIR 105 244 -18 294 212 94 24 chr4 10912303 10912388 -191415959 + MIR SINE MIR 95 185 -77 2014 120 3 7 chr4 10912415 10912728 -191415619 + AluSx SINE Alu 1 312 0 27 29 0 0 chr4 10913417 10913451 -191414896 + AT_rich Low_complexity Low_complexity 1 34 0 291 330 11 0 chr4 10913922 10914013 -191414334 + MIR SINE MIR 49 140 -122 687 156 0 31 chr4 10914165 10914293 -191414054 - L1MD1 LINE L1 -5 6237 6114 617 187 0 41 chr4 10914507 10914630 -191413717 + FLAM_C SINE Alu 2 119 -24 587 26 26 0 chr4 10914633 10914709 -191413638 + (GAAA)n Simple_repeat Simple_repeat 2 79 0 364 294 88 0 chr4 10914842 10914978 -191413369 + MIR SINE MIR 106 253 -9 708 254 50 18 chr4 10914983 10915203 -191413144 - MER113 DNA MER1_type? -26 495 269 234 189 205 39 chr4 10915229 10915356 -191412991 - MER113 DNA MER1_type? -357 164 17 583 234 108 6 chr4 10916457 10916615 -191411732 + MER5B DNA MER1_type 5 178 0 2267 111 0 0 chr4 10916635 10916924 -191411423 + AluSx SINE Alu 1 289 -23 1144 81 23 0 chr4 10917009 10917039 -191411308 + (TTTC)n Simple_repeat Simple_repeat 1 206 0 1144 81 23 0 chr4 10917039 10917211 -191411136 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 193 125 21 21 chr4 10917217 10917265 -191411082 + T-rich Low_complexity Low_complexity 1 48 0 352 342 74 30 chr4 10917271 10917473 -191410874 - MIR SINE MIR -32 230 20 1678 155 10 46 chr4 10917564 10917868 -191410479 - AluSx SINE Alu -19 293 1 226 356 117 37 chr4 10918131 10918294 -191410053 - L2 LINE L2 -17 3255 3080 1256 128 22 0 chr4 10918400 10918579 -191409768 + MSTA LTR MaLR 246 428 0 1784 163 80 23 chr4 10919468 10919818 -191408529 + THE1C LTR MaLR 6 375 0 2214 112 10 0 chr4 10920372 10920675 -191407672 + AluSx SINE Alu 1 306 -6 223 347 124 0 chr4 10920734 10920855 -191407492 - L2 LINE L2 0 3272 3137 236 109 0 22 chr4 10921005 10921051 -191407296 + (TA)n Simple_repeat Simple_repeat 2 46 0 207 139 0 0 chr4 10921245 10921281 -191407066 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 311 313 24 60 chr4 10921878 10922044 -191406303 - MIR SINE MIR -89 173 14 426 85 0 0 chr4 10922064 10922123 -191406224 + (TG)n Simple_repeat Simple_repeat 2 60 0 242 222 0 48 chr4 10922383 10922446 -191405901 - L2 LINE L2 -8 3305 3246 188 310 17 17 chr4 10922668 10922726 -191405621 - L2 LINE L2 -195 3077 3020 224 184 0 82 chr4 10922871 10922920 -191405427 + MIR3 SINE MIR 125 169 -39 231 114 0 0 chr4 10923085 10923120 -191405227 + (CACAA)n Simple_repeat Simple_repeat 1 35 0 664 258 65 50 chr4 10923801 10924138 -191404209 - L2 LINE L2 -46 3267 2926 2033 176 88 25 chr4 10924140 10924537 -191403810 - MSTC LTR MaLR -1 427 6 5020 256 90 31 chr4 10924540 10926178 -191402169 - MSTC-int LTR MaLR 0 1735 2 2203 176 25 32 chr4 10926180 10926611 -191401736 - MSTC LTR MaLR 0 428 1 4708 222 19 39 chr4 10926731 10928438 -191399909 - L1MA10 LINE L1 -1 6333 4660 443 213 16 57 chr4 10929552 10929651 -191398696 - MER63 DNA MER1_type -11 1050 955 2498 52 0 7 chr4 10929651 10929957 -191398390 + AluY SINE Alu 1 304 -7 443 213 16 57 chr4 10929957 10929979 -191398368 - MER63 DNA MER1_type -106 955 934 617 202 8 8 chr4 10929981 10930105 -191398242 - Tigger7 DNA MER2_type 0 2587 2464 2869 188 40 8 chr4 10930106 10930632 -191397715 - Tigger7 DNA MER2_type -1944 543 1 1764 117 0 78 chr4 10930695 10931004 -191397343 - AluSx SINE Alu -23 289 5 3122 184 43 57 chr4 10931245 10931288 -191397059 + LTR8A LTR ERV1 1 43 -684 2102 114 0 29 chr4 10931288 10931595 -191396752 - AluY SINE Alu -13 298 1 3122 184 43 57 chr4 10931595 10932288 -191396059 + LTR8A LTR ERV1 43 727 0 433 214 160 0 chr4 10932728 10932859 -191395488 - MER103 DNA DNA -1 165 14 2167 128 0 6 chr4 10932880 10933193 -191395154 - AluSx SINE Alu -1 311 1 238 250 284 0 chr4 10934399 10934515 -191393832 + MIR3 SINE MIR 45 193 -15 2259 89 0 3 chr4 10936234 10936560 -191391787 + AluSg SINE Alu 1 325 0 1061 256 103 38 chr4 10936675 10937151 -191391196 + LTR33 LTR ERVL 15 521 0 391 265 8 53 chr4 10938310 10938442 -191389905 + MIR SINE MIR 46 171 -91 710 242 137 14 chr4 10938751 10939028 -191389319 - L1MCc LINE L1 -5152 1271 961 820 161 77 0 chr4 10939346 10939489 -191388858 - MER20 DNA MER1_type -65 154 1 221 274 0 0 chr4 10939701 10939752 -191388595 + L2 LINE L2 3245 3295 -18 2020 137 0 71 chr4 10939847 10940183 -191388164 - AluJb SINE Alu 0 312 1 1753 182 0 14 chr4 10940343 10940640 -191387707 - AluJb SINE Alu -19 293 1 249 225 236 0 chr4 10941353 10941442 -191386905 - L2 LINE L2 -1 3312 3203 964 114 0 0 chr4 10941530 10941662 -191386685 - AluJb SINE Alu -2 310 179 241 276 0 13 chr4 10941720 10941796 -191386551 - MIR SINE MIR -121 141 67 2139 136 3 0 chr4 10941834 10942143 -191386204 - AluSg SINE Alu 0 310 1 317 290 72 43 chr4 10942214 10942421 -191385926 + L2 LINE L2 3097 3309 -4 340 316 102 20 chr4 10942664 10942860 -191385487 + L1ME LINE L1 5397 5608 -513 2158 121 0 0 chr4 10943066 10943373 -191384974 + AluSg SINE Alu 1 307 0 520 87 0 0 chr4 10943537 10943606 -191384741 - Alu SINE Alu -8 301 233 374 298 38 30 chr4 10944604 10944735 -191383612 + L2 LINE L2 3140 3271 -1 418 341 56 16 chr4 10945149 10945401 -191382946 - MIR SINE MIR 0 262 1 779 173 120 52 chr4 10945746 10945937 -191382410 + MLT1E3 LTR MaLR 1 204 -420 580 220 85 0 chr4 10945949 10946090 -191382257 + L1MB8 LINE L1 4204 4356 -1790 810 161 0 0 chr4 10946141 10946265 -191382082 + FLAM_C SINE Alu 1 124 -19 3808 221 62 16 chr4 10946275 10947979 -191380368 + L1MB8 LINE L1 4369 6176 -2 1008 221 57 51 chr4 10947979 10948364 -191379983 + MLT1E3 LTR MaLR 215 624 0 327 169 0 46 chr4 10948714 10948779 -191379568 + MLT1B LTR MaLR 117 178 -196 982 240 36 0 chr4 10948830 10949026 -191379321 + MLT1B LTR MaLR 188 390 0 231 338 78 7 chr4 10949206 10949360 -191378987 + MIR SINE MIR 90 254 -8 216 97 0 0 chr4 10949831 10949862 -191378485 + (GA)n Simple_repeat Simple_repeat 2 32 0 210 171 0 0 chr4 10949991 10950032 -191378315 + (TG)n Simple_repeat Simple_repeat 2 42 0 204 40 0 0 chr4 10950114 10950139 -191378208 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 23 54 0 0 chr4 10950210 10950247 -191378100 + AT_rich Low_complexity Low_complexity 1 37 0 298 321 80 30 chr4 10950264 10950566 -191377781 - L1ME LINE L1 -295 5826 5510 2319 107 0 3 chr4 10950741 10951075 -191377272 - AluSq SINE Alu 0 333 1 233 397 40 33 chr4 10951631 10951782 -191376565 + L2 LINE L2 3116 3267 -5 2089 123 3 3 chr4 10952249 10952568 -191375779 - AluSx SINE Alu 0 319 1 1026 166 17 131 chr4 10953714 10954064 -191374283 + MER31A LTR ERV1 10 319 -166 2028 183 75 27 chr4 10954084 10954522 -191373825 + LTR2B LTR ERV1 32 490 0 691 205 58 18 chr4 10954522 10954679 -191373668 + MER31A LTR ERV1 319 482 -3 285 310 60 22 chr4 10954703 10954887 -191373460 + L2 LINE L2 2869 3059 -254 386 265 172 45 chr4 10955127 10955350 -191372997 + MLT1J2 LTR MaLR 196 449 -1 198 272 148 43 chr4 10956088 10956250 -191372097 + MER5A DNA MER1_type 10 188 -1 982 274 108 52 chr4 10956820 10957283 -191371064 + MLT1J LTR MaLR 1 489 -22 350 235 67 79 chr4 10957383 10957536 -191370811 + MIR SINE MIR 37 185 -77 1993 130 58 7 chr4 10958019 10958311 -191370036 - AluSx SINE Alu -5 307 1 225 308 0 15 chr4 10958800 10958865 -191369482 + GA-rich Low_complexity Low_complexity 1 64 0 6620 169 22 24 chr4 10958879 10958976 -191369371 + Tigger3b DNA MER2_type 1 97 -2931 4140 126 24 6 chr4 10958976 10959609 -191368738 + LTR9B LTR ERV1 1 644 0 6620 169 22 24 chr4 10959609 10960745 -191367602 + Tigger3b DNA MER2_type 97 1231 0 219 232 0 0 chr4 10960747 10960803 -191367544 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 197 285 12 0 chr4 10960986 10961060 -191367287 + MIR SINE MIR 77 142 -66 23 0 0 0 chr4 10961090 10961113 -191367234 + AT_rich Low_complexity Low_complexity 1 23 0 195 146 0 0 chr4 10962283 10962324 -191366023 + (CA)n Simple_repeat Simple_repeat 1 41 0 231 248 64 18 chr4 10962376 10962485 -191365862 - L1ME LINE L1 -224 5897 5784 2065 135 0 28 chr4 10962705 10963024 -191365323 - AluSg SINE Alu 0 310 1 329 266 97 0 chr4 10964060 10964184 -191364163 - MIR SINE MIR -96 166 31 2275 152 55 0 chr4 10964712 10965094 -191363253 + MER57A LTR ERV1 1 403 0 658 193 25 0 chr4 10965110 10965229 -191363118 + FLAM_A SINE Alu 1 122 -11 1828 157 36 36 chr4 10965322 10965659 -191362688 - MER1B DNA MER1_type 0 337 1 2234 73 73 0 chr4 10965766 10966052 -191362295 - AluSc SINE Alu -2 307 1 319 246 48 76 chr4 10966092 10966394 -191361953 - L1ME LINE L1 -497 5624 5325 2239 103 0 29 chr4 10966394 10966705 -191361642 - AluSx SINE Alu -10 302 1 319 246 48 76 chr4 10966705 10966722 -191361625 - L1ME LINE L1 -796 5325 5309 211 291 63 16 chr4 10967131 10967258 -191361089 - MIR SINE MIR -107 155 23 234 355 43 7 chr4 10967771 10967912 -191360435 - MIR3 SINE MIR 0 208 63 370 179 0 0 chr4 10968101 10968168 -191360179 - L1MA10 LINE L1 -35 6299 6233 373 172 0 0 chr4 10968169 10968233 -191360114 + L1MB1 LINE L1 5898 5961 -207 1032 219 35 67 chr4 10968286 10968603 -191359744 + L1MA10 LINE L1 5903 6156 -24 253 309 65 2 chr4 10968636 10968747 -191359600 - MIR SINE MIR -54 154 35 22 94 0 0 chr4 10969637 10969701 -191358646 + AT_rich Low_complexity Low_complexity 1 64 0 201 296 25 37 chr4 10970337 10970418 -191357929 - MIR3 SINE MIR -10 198 119 204 175 50 0 chr4 10970936 10970976 -191357371 + (TGAG)n Simple_repeat Simple_repeat 1 42 0 1975 141 0 3 chr4 10972132 10972466 -191355881 - AluSx SINE Alu 0 333 1 1989 131 3 13 chr4 10972812 10973131 -191355216 + AluSx SINE Alu 1 312 0 466 274 63 17 chr4 10973856 10974031 -191354316 - MER5A DNA MER1_type -4 185 3 251 98 39 0 chr4 10974173 10974224 -191354123 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 1953 102 62 11 chr4 10974252 10974526 -191353821 + AluSp SINE Alu 1 288 -25 264 30 0 0 chr4 10974526 10974559 -191353788 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 294 250 99 33 chr4 10974577 10974729 -191353618 + MIR SINE MIR 29 190 -72 373 297 97 12 chr4 10975175 10975340 -191353007 + MIR SINE MIR 76 254 -8 2287 101 3 0 chr4 10975467 10975764 -191352583 - AluSp SINE Alu -15 298 1 250 222 121 30 chr4 10976881 10976980 -191351367 + L2 LINE L2 3149 3256 -16 180 218 18 18 chr4 10978014 10978069 -191350278 - L2 LINE L2 -8 3305 3251 327 349 94 30 chr4 10978296 10978669 -191349678 + L2 LINE L2 2853 3249 -23 194 294 12 35 chr4 10979635 10979720 -191348627 + L2 LINE L2 2976 3058 -214 334 317 67 6 chr4 10979791 10979955 -191348392 - L2 LINE L2 0 3313 3140 201 356 10 0 chr4 10980527 10980631 -191347716 - MIR SINE MIR -98 164 60 898 218 109 51 chr4 10981763 10982147 -191346200 + MLT1C LTR MaLR 47 459 -8 243 350 153 22 chr4 10982437 10982711 -191345636 - L3 LINE CR1 -425 1152 843 240 287 46 11 chr4 10982810 10982897 -191345450 - MIR SINE MIR -41 221 132 1215 236 107 0 chr4 10982943 10983252 -191345095 - LTR16A LTR ERVL 0 450 109 2725 137 15 0 chr4 10984259 10984667 -191343680 + MLT2C2 LTR ERVL 1 414 -50 6391 134 66 34 chr4 10984706 10984988 -191343359 - Tigger3b DNA MER2_type -1797 1231 960 2289 101 3 10 chr4 10984988 10985295 -191343052 + AluSc SINE Alu 5 309 0 6391 134 66 34 chr4 10985295 10986204 -191342143 - Tigger3b DNA MER2_type -2068 960 1 253 145 26 105 chr4 10986209 10986285 -191342062 + MLT2D LTR ERVL 354 414 0 215 296 37 0 chr4 10986394 10986475 -191341872 - MIR SINE MIR -68 194 111 215 350 17 68 chr4 10987235 10987352 -191340995 + MIR3 SINE MIR 46 156 -52 235 297 42 42 chr4 10988134 10988182 -191340165 - L2 LINE L2 -14 3258 3211 1189 236 108 15 chr4 10988182 10988516 -191339831 - MLT1A1 LTR MaLR 0 365 1 235 297 42 42 chr4 10988516 10988585 -191339762 - L2 LINE L2 -60 3212 3141 309 316 27 0 chr4 10989215 10989378 -191338969 - MIR3 SINE MIR -3 205 34 2589 23 40 0 chr4 10989484 10989783 -191338564 - AluY SINE Alu 0 311 1 432 0 0 0 chr4 10990211 10990259 -191338088 + (CA)n Simple_repeat Simple_repeat 2 49 0 2019 122 3 23 chr4 10990341 10990477 -191337870 + AluSx SINE Alu 1 138 -174 2218 110 0 0 chr4 10990477 10990786 -191337561 + AluSc SINE Alu 1 309 0 2019 122 3 23 chr4 10990786 10990951 -191337396 + AluSx SINE Alu 138 297 -15 231 331 63 28 chr4 10991898 10992040 -191336307 - MIR SINE MIR -114 148 2 324 275 0 0 chr4 10992325 10992405 -191335942 + MIR SINE MIR 173 252 -10 412 313 83 77 chr4 10992431 10993174 -191335173 - L2 LINE L2 -8 3305 2561 355 208 64 48 chr4 10993985 10994110 -191334237 + MER5A DNA MER1_type 10 136 -53 234 319 62 18 chr4 10994121 10994234 -191334113 + MIR SINE MIR 91 208 -54 1721 181 14 7 chr4 10994342 10994635 -191333712 + AluSx SINE Alu 1 295 -17 1741 118 0 118 chr4 10994637 10995001 -191333346 + AluSx SINE Alu 1 302 0 4199 194 41 16 chr4 10995366 10996212 -191332135 - MER63C DNA MER1_type -130 930 59 342 115 0 0 chr4 10996212 10996264 -191332083 + (TA)n Simple_repeat Simple_repeat 1 52 0 4199 194 41 16 chr4 10996264 10996325 -191332022 - MER63C DNA MER1_type -1001 59 1 2235 224 40 9 chr4 10997418 10997971 -191330376 + L1MB8 LINE L1 5586 6155 -23 2539 138 26 28 chr4 10997973 10998400 -191329947 - MSTA LTR MaLR 0 428 3 209 205 0 0 chr4 10999042 10999081 -191329266 + A-rich Low_complexity Low_complexity 2 40 0 231 244 49 12 chr4 10999238 10999320 -191329027 - MIR SINE MIR -109 153 69 198 136 45 0 chr4 11000208 11000252 -191328095 - MIR SINE MIR -119 143 98 2091 96 46 26 chr4 11000260 11000562 -191327785 + AluY SINE Alu 1 308 -3 252 298 61 9 chr4 11000719 11000833 -191327514 + L2 LINE L2 3153 3272 0 196 171 0 0 chr4 11001672 11001707 -191326640 - MIR SINE MIR -111 151 117 1545 213 52 33 chr4 11002161 11002528 -191325819 - MLT1A2 LTR MaLR 0 374 1 25 31 0 0 chr4 11002540 11002572 -191325775 + AT_rich Low_complexity Low_complexity 1 32 0 275 359 27 59 chr4 11002845 11003065 -191325282 + MIR SINE MIR 3 215 -47 2328 49 49 0 chr4 11003747 11004031 -191324316 - AluY SINE Alu -13 298 1 225 0 0 0 chr4 11004033 11004058 -191324289 + (T)n Simple_repeat Simple_repeat 1 25 0 246 216 95 86 chr4 11004080 11004196 -191324151 + MER103 DNA DNA 49 165 -1 276 243 0 0 chr4 11004983 11005057 -191323290 + GA-rich Low_complexity Low_complexity 2 75 0 399 168 22 45 chr4 11005059 11005238 -191323109 + (CAGAGA)n Simple_repeat Simple_repeat 4 178 0 23 78 0 0 chr4 11005937 11005988 -191322359 + AT_rich Low_complexity Low_complexity 1 51 0 346 258 0 11 chr4 11006287 11006376 -191321971 + MIR SINE MIR 59 146 -116 189 221 0 0 chr4 11007014 11007082 -191321265 + GA-rich Low_complexity Low_complexity 2 69 0 456 284 122 52 chr4 11007104 11007466 -191320881 + LTR16A1 LTR ERVL 65 451 -6 273 339 159 8 chr4 11007466 11007717 -191320630 + L2 LINE L2 2602 2890 -424 2305 190 45 49 chr4 11008116 11008742 -191319605 + LTR29 LTR ERV1 1 651 -2 209 273 15 0 chr4 11010117 11010183 -191318164 + (TTCA)n Simple_repeat Simple_repeat 1 67 0 547 311 109 7 chr4 11011483 11011766 -191316581 + L2 LINE L2 2292 2603 -711 278 293 45 38 chr4 11011914 11012047 -191316300 + L2 LINE L2 3140 3273 -40 1888 136 4 0 chr4 11012411 11012676 -191315671 - AluSx SINE Alu -46 266 1 300 302 62 16 chr4 11012859 11012988 -191315359 - MIR SINE MIR -13 249 115 1764 139 17 31 chr4 11117298 11117585 -191210762 + AluJo SINE Alu 5 287 -25 2208 99 3 0 chr4 11117599 11117882 -191210465 + AluSx SINE Alu 1 284 -28 378 0 0 0 chr4 11117882 11117924 -191210423 + (CA)n Simple_repeat Simple_repeat 2 43 0 1839 141 3 33 chr4 11117924 11118059 -191210288 + AluSx SINE Alu 1 138 -174 2221 74 50 11 chr4 11118059 11118342 -191210005 + AluY SINE Alu 1 294 -17 1839 141 3 33 chr4 11118342 11118510 -191209837 + AluSx SINE Alu 138 295 -17 1722 73 0 5 chr4 11118955 11119173 -191209174 - AluY SINE Alu -94 217 1 198 276 10 61 chr4 11119189 11119287 -191209060 - MIR SINE MIR -84 178 86 2523 62 0 7 chr4 11119450 11119759 -191208588 + AluY SINE Alu 4 310 -1 243 259 52 59 chr4 11119872 11120007 -191208340 + LTR33 LTR ERVL 19 152 -369 184 303 28 97 chr4 11120463 11120608 -191207739 + L2 LINE L2 3137 3271 -1 244 215 76 25 chr4 11121527 11121606 -191206741 + MIR SINE MIR 94 176 -86 2867 19 0 0 chr4 11122028 11122339 -191206008 + AluYb8 SINE Alu 1 311 -7 31 0 0 0 chr4 11122605 11122636 -191205711 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 11123786 11123808 -191204539 + AT_rich Low_complexity Low_complexity 1 22 0 976 208 79 9 chr4 11123882 11124156 -191204191 + L1MC3 LINE L1 6145 6333 0 310 260 34 34 chr4 11124170 11124347 -191204000 + L1M4 LINE L1 2150 2326 -3820 26 82 0 0 chr4 11124366 11124427 -191203920 + AT_rich Low_complexity Low_complexity 1 61 0 281 281 73 54 chr4 11124461 11124778 -191203569 + L1M4 LINE L1 2386 2708 -3438 551 261 101 70 chr4 11124783 11124940 -191203407 + L1M4 LINE L1 2779 2930 -3216 1543 198 3 3 chr4 11124940 11125223 -191203124 + AluJo SINE Alu 24 306 -6 551 261 101 70 chr4 11125223 11125402 -191202945 + L1M4 LINE L1 2930 3102 -3044 1430 195 54 87 chr4 11125402 11125849 -191202498 - MSTB1 LTR MaLR 0 432 1 551 261 101 70 chr4 11125849 11126619 -191201728 + L1M4 LINE L1 3102 4371 -1775 231 200 38 38 chr4 11126626 11126706 -191201641 + (CATATA)n Simple_repeat Simple_repeat 3 82 0 343 285 28 86 chr4 11128707 11129033 -191199314 - L1MC4a LINE L1 -891 6917 6611 29 60 0 0 chr4 11129166 11129216 -191199131 + AT_rich Low_complexity Low_complexity 1 50 0 651 252 14 0 chr4 11129324 11129463 -191198884 - MER5A DNA MER1_type -3 186 46 20434 191 20 16 chr4 11129464 11136255 -191192092 + L1PA11 LINE L1 1 7627 0 306 122 61 0 chr4 11136255 11136304 -191192043 - MER5A DNA MER1_type -136 53 2 21 57 0 0 chr4 11137072 11137107 -191191240 + AT_rich Low_complexity Low_complexity 1 35 0 557 209 0 16 chr4 11137396 11137525 -191190822 - FRAM SINE Alu -4 172 46 1815 176 14 23 chr4 11137668 11138020 -191190327 - L1PA15 LINE L1 -1 6164 5816 254 250 0 0 chr4 11138020 11138088 -191190259 + L1MD3 LINE L1 7797 7864 -131 1439 186 41 3 chr4 11138089 11138384 -191189963 - MLT1A1 LTR MaLR 0 365 60 414 213 0 0 chr4 11138390 11138484 -191189863 + (TG)n Simple_repeat Simple_repeat 2 95 0 357 195 55 23 chr4 11138556 11138684 -191189663 + L1MD3 LINE L1 7864 7995 0 1584 220 0 0 chr4 11139228 11139510 -191188837 - AluJo SINE Alu -30 282 1 2206 119 3 3 chr4 11140155 11140467 -191187880 - AluSp SINE Alu -1 312 1 1349 170 10 179 chr4 11140774 11141287 -191187060 + MSTA LTR MaLR 1 428 0 262 292 106 19 chr4 11141586 11141850 -191186497 + L1ME3A LINE L1 4698 4984 -1162 400 287 124 0 chr4 11141870 11142079 -191186268 + L1ME3A LINE L1 5035 5269 -877 207 181 0 69 chr4 11142080 11142152 -191186195 + (TA)n Simple_repeat Simple_repeat 1 67 0 1349 273 86 19 chr4 11142176 11142825 -191185522 + L1ME3A LINE L1 5303 5996 -174 1867 168 0 10 chr4 11143448 11143752 -191184595 - AluJb SINE Alu -11 301 1 436 284 107 50 chr4 11143796 11144134 -191184213 + L1ME4a LINE L1 5608 5964 -157 753 193 0 20 chr4 11144363 11144513 -191183834 + L1MB2 LINE L1 5450 5596 -587 2594 135 4 0 chr4 11144523 11145165 -191183182 - L1P4 LINE L1 -608 5555 4910 2762 174 10 31 chr4 11145165 11145747 -191182600 + L1MB2 LINE L1 5595 6164 -7 1875 178 0 25 chr4 11145993 11146313 -191182034 - AluJb SINE Alu 0 312 1 657 200 32 7 chr4 11146313 11146468 -191181879 + MER3 DNA MER1_type 34 192 -17 205 350 34 26 chr4 11146992 11147109 -191181238 + MIR SINE MIR 34 151 -111 222 91 0 0 chr4 11147399 11147432 -191180915 + (TTTTTG)n Simple_repeat Simple_repeat 1 33 0 1159 205 47 18 chr4 11148660 11148938 -191179409 + MLT1A1 LTR MaLR 1 286 -79 680 220 21 0 chr4 11148935 11149076 -191179271 + MLT1A1 LTR MaLR 222 365 0 * 387 60 0 0 chr4 11149229 11149279 -191179068 + (TG)n Simple_repeat Simple_repeat 1 50 0 479 227 95 74 chr4 11149546 11149872 -191178475 - LTR37A LTR ERV1 -42 384 52 1051 212 45 84 chr4 11152084 11152545 -191175802 + MLT1C LTR MaLR 7 483 -22 2595 111 14 3 chr4 11152545 11152916 -191175431 - THE1C LTR MaLR 0 375 1 1051 212 45 84 chr4 11152916 11152937 -191175410 + MLT1C LTR MaLR 483 503 -2 306 331 59 56 chr4 11153623 11153964 -191174383 - L2 LINE L2 -1 3312 2971 186 300 60 50 chr4 11154059 11154159 -191174188 - L2 LINE L2 -494 2820 2720 408 271 53 6 chr4 11154234 11154404 -191173943 - MER5B DNA MER1_type 0 178 1 289 119 0 0 chr4 11154447 11154489 -191173858 - MLT1A1 LTR MaLR -7 358 317 357 232 50 0 chr4 11154912 11155011 -191173336 + MER5A DNA MER1_type 9 112 -77 251 333 81 30 chr4 11155097 11155295 -191173052 - Charlie8 DNA MER1_type -2198 219 12 4769 149 0 23 chr4 11156488 11157358 -191170989 - L1PA16 LINE L1 0 6166 5317 1436 178 4 19 chr4 11157371 11157641 -191170706 - AluJb SINE Alu -1 311 46 4858 220 18 8 chr4 11157650 11158890 -191169457 - L1 LINE L1 -815 5331 4080 335 309 0 0 chr4 11158890 11158971 -191169376 - L2 LINE L2 -11 3302 3222 619 343 98 26 chr4 11159180 11159708 -191168639 - L2 LINE L2 -233 3080 2517 1623 216 45 39 chr4 11160086 11160550 -191167797 - MLT1C LTR MaLR 0 467 1 505 347 18 18 chr4 11160550 11160775 -191167572 + L3 LINE CR1 1323 1547 -30 1652 164 12 18 chr4 11160813 11161142 -191167205 + L1MB7 LINE L1 5839 6165 -19 249 337 58 0 chr4 11161175 11161261 -191167086 - MIR SINE MIR -108 154 64 1856 159 24 29 chr4 11161314 11161691 -191166656 + THE1C LTR MaLR 1 375 0 908 229 78 53 chr4 11162007 11162365 -191165982 - MLT1E3 LTR MaLR 0 624 258 496 217 9 9 chr4 11162470 11162576 -191165771 - MLT1E3 LTR MaLR -548 106 1 1820 160 9 29 chr4 11162900 11163250 -191165097 - MLT1B LTR MaLR -47 343 1 22 0 0 0 chr4 11164893 11164915 -191163432 + AT_rich Low_complexity Low_complexity 1 22 0 346 284 29 0 chr4 11165360 11165462 -191162885 + MIR SINE MIR 86 190 -72 687 168 168 45 chr4 11166102 11166257 -191162090 + MER5A DNA MER1_type 10 183 -6 254 268 49 37 chr4 11166692 11166774 -191161573 + L2 LINE L2 3189 3271 -1 322 329 0 0 chr4 11166878 11166963 -191161384 + polypyrimidine Low_complexity Low_complexity 5 89 0 243 0 0 0 chr4 11166963 11166990 -191161357 + (CAT)n Simple_repeat Simple_repeat 2 28 0 198 308 103 13 chr4 11167003 11167081 -191161266 - MIR SINE MIR -128 134 50 25 31 0 0 chr4 11167350 11167382 -191160965 + AT_rich Low_complexity Low_complexity 1 32 0 1831 119 61 51 chr4 11167393 11167688 -191160659 - AluSx SINE Alu -14 298 1 312 27 0 0 chr4 11168371 11168408 -191159939 + (TG)n Simple_repeat Simple_repeat 2 38 0 829 325 205 19 chr4 11168755 11169488 -191158859 + L2 LINE L2 2088 2956 -358 357 313 36 46 chr4 11169541 11169736 -191158611 + L2 LINE L2 3121 3313 0 423 267 111 75 chr4 11170271 11170541 -191157806 + MIR SINE MIR 5 262 0 244 349 91 20 chr4 11170974 11171172 -191157175 + MIR SINE MIR 20 231 -31 197 286 48 32 chr4 11171168 11171231 -191157116 + MIR SINE MIR 89 152 -56 * 224 261 14 14 chr4 11171315 11171384 -191156963 + CT-rich Low_complexity Low_complexity 3 71 0 443 275 49 50 chr4 11171534 11171703 -191156644 - MIR SINE MIR -54 154 33 771 240 27 74 chr4 11171898 11172314 -191156033 + MLT1A2 LTR MaLR 1 390 0 940 257 46 6 chr4 11173027 11173362 -191154985 + MER110A LTR ERV1 143 470 -2 21 0 0 0 chr4 11173509 11173530 -191154817 + AT_rich Low_complexity Low_complexity 1 21 0 208 333 0 0 chr4 11173984 11174044 -191154303 - MIR SINE MIR -6 256 197 210 363 22 11 chr4 11174211 11174302 -191154045 - MER5A DNA MER1_type -39 150 59 603 279 28 16 chr4 11174559 11174806 -191153541 - HAL1 LINE L1 -784 1723 1474 2059 145 3 10 chr4 11174871 11175182 -191153165 - AluSx SINE Alu -3 309 1 2104 223 118 42 chr4 11175373 11176617 -191151730 + L1ME2 LINE L1 4841 6164 0 1466 228 3 19 chr4 11176633 11176949 -191151398 + AluJo SINE Alu 1 311 -1 311 315 99 6 chr4 11176954 11177135 -191151212 + L1M4 LINE L1 2967 3164 -2982 206 264 111 35 chr4 11178592 11178682 -191149665 - MIR SINE MIR 0 262 156 1661 180 0 17 chr4 11178682 11178977 -191149370 - AluJb SINE Alu -21 291 2 206 264 111 35 chr4 11178977 11179030 -191149317 - MIR SINE MIR -106 156 108 588 256 236 28 chr4 11179262 11179512 -191148835 + LTR16C LTR ERVL 188 489 -2 2060 117 7 10 chr4 11179963 11180254 -191148093 - AluSg SINE Alu -14 296 7 2272 192 83 38 chr4 11181111 11181591 -191146756 + MLT1D LTR MaLR 3 504 -1 449 336 18 10 chr4 11181674 11181866 -191146481 + MIR SINE MIR 7 201 -61 441 252 57 0 chr4 11182833 11182956 -191145391 - Zaphod DNA AcHobo 0 4031 3902 1099 325 87 8 chr4 11182968 11183370 -191144977 - Zaphod DNA AcHobo -634 59 64 363 60 0 0 chr4 11183370 11183420 -191144927 + (TG)n Simple_repeat Simple_repeat 1 50 0 1099 325 87 8 chr4 11183420 11183490 -191144857 - Zaphod DNA AcHobo -628 65 2 1375 217 77 53 chr4 11184580 11185036 -191143311 - MLT1C LTR MaLR 0 467 1 806 253 92 0 chr4 11185215 11185444 -191142903 - MIR SINE MIR 0 262 13 567 256 176 6 chr4 11185551 11185864 -191142483 + L1ME4a LINE L1 5742 6107 -14 756 32 0 0 chr4 11186405 11186500 -191141847 + (CCCTA)n Simple_repeat Simple_repeat 2 96 0 1503 81 0 24 chr4 11186501 11186712 -191141635 - AluY SINE Alu -19 292 87 1222 41 0 7 chr4 11186728 11186874 -191141473 - AluY SINE Alu -166 145 1 2277 113 0 3 chr4 11187506 11187817 -191140530 + AluSg SINE Alu 1 310 0 635 268 212 89 chr4 11188943 11189458 -191138889 - MLT1H1 LTR MaLR -2 593 16 414 252 0 0 chr4 11189498 11189629 -191138718 + (TCCA)n Simple_repeat Simple_repeat 2 132 0 362 313 119 0 chr4 11189633 11189767 -191138580 - L2 LINE L2 0 3272 3123 356 315 22 63 chr4 11189961 11190183 -191138164 + L2 LINE L2 3013 3225 -88 324 318 39 31 chr4 11190290 11190419 -191137928 + MIR SINE MIR 23 152 -56 207 0 0 0 chr4 11190638 11190661 -191137686 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1720 124 31 8 chr4 11190795 11191053 -191137294 - L1PA10 LINE L1 -2 6166 5903 968 323 29 39 chr4 11191656 11192068 -191136279 - LTR16C LTR ERVL -10 481 74 468 0 0 0 chr4 11192199 11192251 -191136096 + (TA)n Simple_repeat Simple_repeat 2 53 0 399 56 0 0 chr4 11192331 11192385 -191135962 + (TG)n Simple_repeat Simple_repeat 2 55 0 1729 167 41 10 chr4 11192520 11192813 -191135534 + AluJo SINE Alu 1 302 -10 818 278 30 25 chr4 11193217 11193580 -191134767 + L1MEc LINE L1 1354 1718 -4678 340 265 53 30 chr4 11193583 11193715 -191134632 + L1M4 LINE L1 4118 4252 -1894 * 1107 249 87 67 chr4 11193692 11193980 -191134367 + L1M4 LINE L1 4560 4841 -1305 2542 121 25 0 chr4 11193980 11194335 -191134012 + THE1B LTR MaLR 1 364 0 1107 249 87 67 chr4 11194335 11194641 -191133706 + L1M4 LINE L1 4841 5166 -980 819 153 38 0 chr4 11194638 11194795 -191133552 - L1P LINE L1 -759 5387 5225 * 2038 94 0 4 chr4 11194788 11195064 -191133283 + L1PA12 LINE L1 5722 5996 -172 1119 236 186 44 chr4 11195418 11195778 -191132569 - L1M4 LINE L1 -399 5767 5360 213 94 0 0 chr4 11195827 11195859 -191132488 + (TG)n Simple_repeat Simple_repeat 1 32 0 40195 51 31 13 chr4 11195920 11196251 -191132096 - L1M4 LINE L1 -834 5312 4988 3614 25 0 5 chr4 11196251 11196654 -191131693 - L1PA2 LINE L1 -1 6154 5754 40195 51 31 13 chr4 11196654 11201544 -191126803 - L1M4 LINE L1 -1158 4988 13 2401 152 3 3 chr4 11201794 11202150 -191126197 + MLT1A1 LTR MaLR 3 358 -7 478 271 53 6 chr4 11202193 11202363 -191125984 + MER5B DNA MER1_type 1 178 0 277 329 61 52 chr4 11202646 11202974 -191125373 + L2 LINE L2 2982 3312 -1 1086 202 41 9 chr4 11203238 11203456 -191124891 - MLT1B LTR MaLR -165 225 1 355 218 40 40 chr4 11203456 11203555 -191124792 + LTR16C LTR ERVL 393 491 0 201 333 61 18 chr4 11203599 11203764 -191124583 - MIR SINE MIR -75 187 16 241 346 68 30 chr4 11204463 11204596 -191123751 - MIR SINE MIR -119 143 6 904 286 14 56 chr4 11204761 11204902 -191123445 + LTR16B LTR ERVL 95 240 -224 1762 182 30 41 chr4 11204902 11205271 -191123076 - MLT1A1 LTR MaLR 0 365 1 904 286 14 56 chr4 11205271 11205486 -191122861 + LTR16B LTR ERVL 240 436 -28 256 299 23 11 chr4 11205525 11205612 -191122735 + L2 LINE L2 3222 3309 -4 314 186 29 20 chr4 11206040 11206142 -191122205 + (TATATG)n Simple_repeat Simple_repeat 4 106 0 1260 224 4 4 chr4 11206204 11206458 -191121889 - L1PB4 LINE L1 0 6156 5903 1362 173 53 50 chr4 11206464 11206787 -191121560 - MER33 DNA MER1_type 0 324 1 267 258 55 78 chr4 11206944 11207072 -191121275 + MIR SINE MIR 18 142 -120 547 215 267 22 chr4 11207819 11208130 -191120217 - L2 LINE L2 -390 2924 2538 214 365 31 10 chr4 11208160 11208256 -191120091 + MIR SINE MIR 20 117 -145 963 269 81 47 chr4 11208345 11208839 -191119508 - MLT1G1 LTR MaLR -14 535 7 586 301 36 0 chr4 11208906 11209099 -191119248 + MIR SINE MIR 63 262 0 582 262 32 79 chr4 11209502 11209754 -191118593 - MIR SINE MIR -13 249 10 1239 244 128 0 chr4 11210310 11210655 -191117692 + MLT1B LTR MaLR 1 389 -1 2102 125 20 7 chr4 11210779 11211084 -191117263 - AluSg1 SINE Alu 0 309 1 215 313 10 101 chr4 11211134 11211233 -191117114 + L2 LINE L2 3110 3199 -73 1716 170 7 11 chr4 11211261 11211544 -191116803 + AluSx SINE Alu 1 282 -30 2277 113 0 3 chr4 11212653 11212964 -191115383 - AluSg SINE Alu 0 310 1 1136 255 140 36 chr4 11214458 11214979 -191113368 + LTR36 LTR ERV1 1 575 -36 532 265 39 57 chr4 11215619 11215849 -191112498 - MIR SINE MIR 0 262 37 2453 136 25 8 chr4 11215967 11216335 -191112012 - THE1C LTR MaLR -1 374 1 484 251 144 36 chr4 11217303 11217498 -191110849 - MLT1H LTR MaLR -282 267 52 404 141 202 10 chr4 11219388 11219487 -191108860 - LTR8A LTR ERV1 -609 118 1 3051 161 22 6 chr4 11219487 11220021 -191108326 - L1MA9 LINE L1 -186 6126 5584 2234 127 27 0 chr4 11220598 11220930 -191107417 + THE1B LTR MaLR 24 364 0 653 238 36 62 chr4 11220931 11221238 -191107109 + L1ME2 LINE L1 4868 5166 -980 * 795 155 39 0 chr4 11221235 11221390 -191106957 - L1P LINE L1 -759 5387 5227 2905 136 0 24 chr4 11221390 11221841 -191106506 + L1PA16 LINE L1 5722 6166 0 320 333 81 30 chr4 11223035 11223233 -191105114 + Charlie8 DNA MER1_type 12 219 -2198 212 188 42 0 chr4 11223319 11223367 -191104980 - MER5A DNA MER1_type -77 112 63 292 202 37 9 chr4 11223467 11223576 -191104771 + (GGGTG)n Simple_repeat Simple_repeat 1 112 0 675 169 0 0 chr4 11223578 11223755 -191104592 + G-rich Low_complexity Low_complexity 1 177 0 293 242 8 53 chr4 11223770 11223902 -191104445 + G-rich Low_complexity Low_complexity 1 126 0 691 242 48 49 chr4 11223904 11224796 -191103551 + L1ME2 LINE L1 5159 6115 -49 22 35 0 0 chr4 11224835 11224864 -191103483 + AT_rich Low_complexity Low_complexity 1 29 0 229 235 106 12 chr4 11225877 11225962 -191102385 + MIR SINE MIR 114 206 -56 267 96 39 19 chr4 11226183 11226235 -191102112 - L1MA10 LINE L1 0 6334 6282 265 61 0 0 chr4 11226228 11226261 -191102086 + L1MB1 LINE L1 6109 6141 -48 * 1953 186 11 24 chr4 11226421 11226672 -191101675 + MLT1A1 LTR MaLR 1 247 -118 2467 166 23 42 chr4 11226672 11227106 -191101241 - MSTB LTR MaLR 0 426 1 1953 186 11 24 chr4 11227106 11227224 -191101123 + MLT1A1 LTR MaLR 247 365 0 364 273 74 8 chr4 11227251 11227372 -191100975 + MER94 DNA DNA 6 134 0 387 383 0 0 chr4 11227418 11227533 -191100814 - MIR SINE MIR -128 134 20 1378 242 82 7 chr4 11228457 11228886 -191099461 - MLT1C LTR MaLR 0 467 7 406 276 15 80 chr4 11228892 11229091 -191099256 + L2 LINE L2 1539 1724 -1590 1235 269 66 46 chr4 11229100 11229146 -191099201 - MLT2B1 LTR ERVL -8 512 468 360 0 0 0 chr4 11229146 11229186 -191099161 + (GA)n Simple_repeat Simple_repeat 1 40 0 1235 269 66 46 chr4 11229186 11229641 -191098706 - MLT2B1 LTR ERVL -52 468 1 580 289 83 5 chr4 11229641 11229845 -191098502 + L2 LINE L2 1720 1939 -1375 435 299 0 8 chr4 11229847 11229964 -191098383 + L2 LINE L2 3190 3305 -8 551 313 50 88 chr4 11229985 11230053 -191098294 + L2 LINE L2 1948 2017 -1297 2420 62 3 3 chr4 11230053 11230361 -191097986 + AluY SINE Alu 2 309 -2 551 313 50 88 chr4 11230361 11230669 -191097678 + L2 LINE L2 2017 2310 -1004 237 378 31 24 chr4 11230918 11231045 -191097302 - MIR3 SINE MIR -75 133 6 539 258 37 0 chr4 11231708 11231871 -191096476 + L1MEc LINE L1 56 224 -6172 247 348 0 0 chr4 11231913 11232002 -191096345 - L2 LINE L2 0 3272 3184 368 344 119 0 chr4 11232007 11232158 -191096189 + MER91A DNA MER1_type 2 170 -26 261 307 71 29 chr4 11232175 11232315 -191096032 - L2 LINE L2 -84 3229 3084 1890 150 11 11 chr4 11232525 11232872 -191095475 - L1MA4A LINE L1 -2 6301 5955 745 148 0 8 chr4 11232875 11233003 -191095344 + L1MA4A LINE L1 5777 5903 -400 513 262 90 88 chr4 11233163 11233668 -191094679 - L1MC4a LINE L1 -1885 5923 5414 1937 127 25 0 chr4 11233668 11234020 -191094327 - AluSx SINE Alu 0 359 1 513 262 90 88 chr4 11234020 11234182 -191094165 - L1MC4a LINE L1 -2394 5414 5254 279 294 92 61 chr4 11234298 11234625 -191093722 - L2 LINE L2 -2290 1024 688 287 310 50 0 chr4 11234829 11234929 -191093418 + MIR3 SINE MIR 91 195 -13 640 216 132 5 chr4 11235719 11235909 -191092438 - MER20 DNA MER1_type -4 215 2 22 0 0 0 chr4 11236203 11236225 -191092122 + AT_rich Low_complexity Low_complexity 1 22 0 5537 165 33 8 chr4 11236271 11236633 -191091714 + L1MC1 LINE L1 5043 5395 -938 1127 242 118 28 chr4 11236633 11236805 -191091542 + MSTD LTR MaLR 1 156 -240 2085 109 3 3 chr4 11236805 11237088 -191091259 + AluSq SINE Alu 5 287 -26 207 0 0 0 chr4 11237091 11237114 -191091233 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1127 242 118 28 chr4 11237114 11237300 -191091047 + MSTD LTR MaLR 157 396 0 5537 165 33 8 chr4 11237300 11238198 -191090149 + L1MC1 LINE L1 5395 6333 0 23 0 0 0 chr4 11238345 11238368 -191089979 + AT_rich Low_complexity Low_complexity 1 23 0 531 267 10 25 chr4 11238432 11238634 -191089713 - L1MA9 LINE L1 -73 6239 6041 * 1752 167 26 3 chr4 11238631 11238978 -191089369 + L1M2 LINE L1 5283 5637 -675 279 195 39 26 chr4 11240393 11240470 -191087877 - MER117 DNA MER1_type -3 194 117 210 273 0 18 chr4 11240653 11240708 -191087639 - L2 LINE L2 -6 3266 3213 294 284 138 77 chr4 11242031 11242408 -191085939 + MLT1K LTR MaLR 189 588 0 218 368 69 11 chr4 11242803 11242890 -191085457 - L2 LINE L2 -31 3241 3150 459 238 93 34 chr4 11243811 11243980 -191084367 - MIR SINE MIR -63 145 4 204 204 0 23 chr4 11244056 11244100 -191084247 - MIR3 SINE MIR -4 204 162 244 228 152 0 chr4 11244351 11244443 -191083904 - MIR SINE MIR -56 206 101 520 237 243 0 chr4 11247668 11247841 -191080506 - MIR SINE MIR -8 254 40 190 333 48 63 chr4 11248052 11248178 -191080169 + MIR3 SINE MIR 4 127 -81 312 193 57 34 chr4 11248201 11248289 -191080058 + L1MC4 LINE L1 6614 6703 -1339 319 299 23 0 chr4 11248310 11248397 -191079950 + L1MC4 LINE L1 6615 6703 -1339 * 338 273 23 0 chr4 11248381 11248469 -191079878 - L1MC4 LINE L1 -1339 6703 6614 * 341 261 0 22 chr4 11248417 11248509 -191079838 + L1MC4 LINE L1 6614 6703 -1339 303 333 0 0 chr4 11248441 11248531 -191079816 - L1MC4 LINE L1 -1339 6703 6614 * 245 204 0 19 chr4 11248533 11248587 -191079760 + (CATA)n Simple_repeat Simple_repeat 2 54 0 476 328 101 0 chr4 11248680 11248878 -191079469 - MIR SINE MIR -5 257 40 2383 82 3 0 chr4 11250068 11250371 -191077976 + AluY SINE Alu 1 304 -7 307 185 64 0 chr4 11250371 11250449 -191077898 - MLT1H LTR MaLR -7 548 470 695 248 6 0 chr4 11252565 11252726 -191075621 + MER58B DNA MER1_type 180 341 0 213 344 76 46 chr4 11252907 11253038 -191075309 - MIR SINE MIR -115 147 13 21 36 0 0 chr4 11253258 11253286 -191075061 + AT_rich Low_complexity Low_complexity 1 28 0 248 312 46 55 chr4 11253347 11253456 -191074891 + MIR3 SINE MIR 13 120 -88 266 267 209 19 chr4 11253621 11253827 -191074520 - MIR SINE MIR -8 254 10 215 185 0 19 chr4 11254318 11254372 -191073975 + (TA)n Simple_repeat Simple_repeat 2 54 0 191 184 0 20 chr4 11254827 11254876 -191073471 + (TA)n Simple_repeat Simple_repeat 1 48 0 282 279 58 29 chr4 11254974 11255078 -191073269 - MIR SINE MIR -62 200 94 209 333 39 0 chr4 11255082 11255160 -191073187 - MIR SINE MIR -4 258 178 2642 101 0 29 chr4 11256569 11256955 -191071392 + THE1C LTR MaLR 1 375 0 8704 124 43 61 chr4 11256955 11258564 -191069783 + THE1C-int LTR MaLR 1 1580 0 2219 144 25 8 chr4 11258564 11258932 -191069415 + THE1C LTR MaLR 1 374 -1 569 261 39 57 chr4 11259050 11259280 -191069067 + MIR SINE MIR 37 262 0 218 311 115 20 chr4 11259436 11259584 -191068763 + MIR SINE MIR 40 201 -61 762 165 18 0 chr4 11260539 11260709 -191067638 + (TAGA)n Simple_repeat Simple_repeat 1 173 0 798 260 37 20 chr4 11260717 11260963 -191067384 - MIR SINE MIR -10 252 3 4914 123 25 4 chr4 11262205 11262968 -191065379 - MER4E LTR ERV1 0 779 1 1063 303 33 23 chr4 11263102 11263495 -191064852 - LTR16A LTR ERVL 0 450 54 377 287 16 0 chr4 11263672 11263794 -191064553 - LTR16A LTR ERVL 0 450 327 392 315 142 28 chr4 11263808 11264195 -191064152 - LTR16B LTR ERVL 0 464 34 645 86 0 11 chr4 11264447 11264540 -191063807 + MER4A LTR ERV1 1 92 -572 * 1735 142 3 22 chr4 11264536 11264883 -191063464 + MER4A LTR ERV1 266 664 0 1955 112 53 32 chr4 11264943 11265281 -191063066 - THE1B LTR MaLR -15 349 5 281 254 15 0 chr4 11265313 11265380 -191062967 + MIR SINE MIR 7 74 -188 665 343 53 45 chr4 11265381 11266408 -191061939 + HERVL LTR ERVL 4175 5209 -445 1799 163 50 53 chr4 11266426 11266824 -191061523 + MLT2C1 LTR ERVL 1 397 0 492 283 22 27 chr4 11267103 11267287 -191061060 + LTR16B LTR ERVL 270 452 -12 202 206 0 0 chr4 11267637 11267671 -191060676 + (TG)n Simple_repeat Simple_repeat 2 35 0 28 0 0 0 chr4 11267711 11267739 -191060608 + AT_rich Low_complexity Low_complexity 1 28 0 329 289 70 28 chr4 11268452 11268594 -191059753 + MIR SINE MIR 63 210 -52 356 318 6 35 chr4 11269075 11269245 -191059102 + MIR SINE MIR 61 225 -37 214 317 144 40 chr4 11270282 11270484 -191057863 - L2 LINE L2 -270 3043 2821 1156 76 0 30 chr4 11270811 11271077 -191057270 + (TTTC)n Simple_repeat Simple_repeat 1 257 0 206 365 78 0 chr4 11271302 11271417 -191056930 + L2 LINE L2 3190 3313 0 980 306 28 20 chr4 11271484 11272027 -191056320 + MLT2E LTR ERVL 15 626 -2 2057 161 0 0 chr4 11272088 11272399 -191055948 - AluSx SINE Alu -1 311 1 342 123 0 0 chr4 11272777 11272834 -191055513 + (CA)n Simple_repeat Simple_repeat 1 57 0 324 247 88 13 chr4 11272837 11273036 -191055311 - MLT2E LTR ERVL -12 616 351 2248 161 26 6 chr4 11273036 11273751 -191054596 - L1MA8 LINE L1 -608 5683 4949 * 2674 131 18 77 chr4 11273748 11274034 -191054313 + L1MA8 LINE L1 5665 5899 -392 2049 119 3 3 chr4 11274034 11274327 -191054020 + AluSx SINE Alu 1 293 -19 2674 131 18 77 chr4 11274327 11274641 -191053706 + L1MA8 LINE L1 5899 6230 -61 345 117 0 0 chr4 11275037 11275097 -191053250 + (TC)n Simple_repeat Simple_repeat 1 60 0 189 178 0 0 chr4 11275096 11275141 -191053206 + (CA)n Simple_repeat Simple_repeat 1 45 0 * 2032 182 49 3 chr4 11276505 11276890 -191051457 - MER57A LTR ERV1 0 403 1 339 197 236 31 chr4 11277657 11277784 -191050563 - L2 LINE L2 0 3313 3161 23 0 0 0 chr4 11277796 11277819 -191050528 + AT_rich Low_complexity Low_complexity 1 23 0 233 234 108 45 chr4 11277891 11278002 -191050345 - L3 LINE CR1 -305 1272 1155 215 320 149 23 chr4 11278065 11278240 -191050107 + MIR SINE MIR 51 247 -15 651 211 13 26 chr4 11278973 11279115 -191049232 + L1MD1 LINE L1 6089 6230 -12 2338 108 0 0 chr4 11279115 11279422 -191048925 + AluSc SINE Alu 1 307 -2 651 211 13 26 chr4 11279422 11279435 -191048912 + L1MD1 LINE L1 6230 6242 0 606 243 78 86 chr4 11279452 11279860 -191048487 + L1MC5 LINE L1 7527 7931 -30 210 368 68 0 chr4 11280165 11280282 -191048065 + L2 LINE L2 3148 3272 0 220 283 100 0 chr4 11280500 11280560 -191047787 + MIR SINE MIR 130 195 -67 539 274 96 5 chr4 11280579 11280776 -191047571 + MIR SINE MIR 36 250 -12 532 324 3 19 chr4 11281292 11281662 -191046685 + (CA)n Simple_repeat Simple_repeat 1 364 0 264 298 0 0 chr4 11281690 11281821 -191046526 + (CA)n Simple_repeat Simple_repeat 1 131 0 331 379 0 16 chr4 11281864 11282046 -191046301 + (CA)n Simple_repeat Simple_repeat 1 179 0 205 264 0 0 chr4 11282532 11282585 -191045762 + MIR SINE MIR 201 253 -9 24 32 0 0 chr4 11283455 11283486 -191044861 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 11283515 11283543 -191044804 + AT_rich Low_complexity Low_complexity 1 28 0 1354 284 78 35 chr4 11283624 11284594 -191043753 + L1M4 LINE L1 4106 5117 -1029 23 54 0 0 chr4 11285218 11285255 -191043092 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr4 11285342 11285368 -191042979 + AT_rich Low_complexity Low_complexity 1 26 0 385 280 19 19 chr4 11285682 11285789 -191042558 - MER97b DNA MER1_type? -558 495 389 1224 168 0 39 chr4 11285789 11286021 -191042326 + AluJb SINE Alu 85 307 -5 1559 256 18 15 chr4 11286021 11286420 -191041927 - MER97c DNA MER1_type? -690 400 1 236 317 0 0 chr4 11287237 11287297 -191041050 + polypyrimidine Low_complexity Low_complexity 5 64 0 231 250 67 19 chr4 11287503 11287607 -191040740 + LTR16C LTR ERVL 355 463 -28 247 393 54 6 chr4 11287953 11288121 -191040226 - MIR SINE MIR -57 205 30 2291 122 0 0 chr4 11288150 11288462 -191039885 - AluSx SINE Alu 0 312 1 182 337 23 12 chr4 11289841 11289927 -191038420 + L2 LINE L2 3186 3272 0 197 33 33 0 chr4 11290335 11290365 -191037982 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 202 284 59 39 chr4 11290437 11290539 -191037808 + MIR SINE MIR 84 187 -75 23 0 0 0 chr4 11290743 11290766 -191037581 + AT_rich Low_complexity Low_complexity 1 23 0 257 392 42 0 chr4 11291193 11291313 -191037034 + L2 LINE L2 3123 3247 -25 320 235 73 88 chr4 11291686 11291822 -191036525 + MIR SINE MIR 18 151 -57 2539 145 0 3 chr4 11292126 11292498 -191035849 - THE1C LTR MaLR -4 371 1 1154 138 0 0 chr4 11292539 11292698 -191035649 - AluSg/x SINE Alu -11 301 143 485 289 53 12 chr4 11293338 11293519 -191034828 + MIR SINE MIR 20 206 -56 1196 146 4 92 chr4 11293937 11294144 -191034203 + L1PB4 LINE L1 5930 6116 -40 2311 71 0 0 chr4 11294144 11294450 -191033897 + AluY SINE Alu 1 306 0 1196 146 4 92 chr4 11294450 11294481 -191033866 + L1PB4 LINE L1 6116 6148 -8 198 258 76 15 chr4 11294541 11294607 -191033740 + MIR SINE MIR 103 172 -90 773 315 19 25 chr4 11296686 11296943 -191031404 + MIR SINE MIR 1 256 -6 342 328 23 0 chr4 11298139 11298267 -191030080 + L2 LINE L2 3182 3312 -1 3603 125 65 2 chr4 11299036 11299557 -191028790 - MER41C LTR ERV1 0 554 1 1427 187 30 37 chr4 11299880 11300433 -191027914 - LTR36 LTR ERV1 -2 609 1 238 361 74 0 chr4 11302004 11302126 -191026221 - MIR SINE MIR -51 211 81 404 141 202 10 chr4 11302907 11303006 -191025341 - LTR8A LTR ERV1 -609 118 1 3093 157 22 6 chr4 11303006 11303540 -191024807 - L1MA9 LINE L1 -186 6126 5584 2072 213 8 0 chr4 11304000 11304362 -191023985 + MLT1A1 LTR MaLR 1 365 0 2447 132 46 0 chr4 11304713 11305062 -191023285 + MLT1A1 LTR MaLR 1 365 0 2478 126 9 0 chr4 11305485 11305834 -191022513 - L1PA11 LINE L1 0 6174 5823 24 0 0 0 chr4 11306034 11306058 -191022289 + AT_rich Low_complexity Low_complexity 1 24 0 747 304 25 36 chr4 11306120 11306396 -191021951 + MLT1G LTR MaLR 24 296 -294 382 216 95 47 chr4 11306476 11306624 -191021723 + MLT1G LTR MaLR 388 542 0 213 39 0 0 chr4 11307213 11307239 -191021108 + (TG)n Simple_repeat Simple_repeat 1 26 0 2127 226 3 0 chr4 11307268 11307653 -191020694 + MLT2B1 LTR ERVL 135 520 0 256 326 193 31 chr4 11307838 11308258 -191020089 - L2 LINE L2 0 3313 2826 703 292 110 15 chr4 11308523 11308914 -191019433 - L1MC/D LINE L1 -2007 5801 5374 460 316 97 21 chr4 11309232 11309861 -191018486 + L1M4 LINE L1 4276 4952 -1194 2320 198 35 17 chr4 11310629 11310828 -191017519 + MLT1C LTR MaLR 1 195 -272 288 0 0 0 chr4 11310828 11310860 -191017487 + (CA)n Simple_repeat Simple_repeat 1 32 0 2320 198 35 17 chr4 11310860 11311119 -191017228 + MLT1C LTR MaLR 195 467 0 440 301 40 12 chr4 11311297 11311470 -191016877 - LTR67 LTR ERVL -2 555 378 238 326 34 0 chr4 11311555 11311644 -191016703 - LTR67 LTR ERVL -393 164 73 2257 115 0 0 chr4 11311811 11312106 -191016241 + AluSx SINE Alu 1 295 -17 207 214 0 0 chr4 11312183 11312225 -191016122 + (TTA)n Simple_repeat Simple_repeat 1 42 0 884 215 40 24 chr4 11312324 11312571 -191015776 + L1MC3 LINE L1 7526 7776 -9 2028 118 9 19 chr4 11312958 11313273 -191015074 + AluSx SINE Alu 1 312 0 21 57 0 0 chr4 11314740 11314775 -191013572 + AT_rich Low_complexity Low_complexity 1 35 0 639 125 0 0 chr4 11314900 11315004 -191013343 + (CA)n Simple_repeat Simple_repeat 2 105 0 445 212 12 0 chr4 11315390 11315475 -191012872 - L2 LINE L2 -1 3312 3227 1092 325 15 18 chr4 11315632 11316032 -191012315 - L2 LINE L2 -660 2654 2256 215 372 54 8 chr4 11316344 11316473 -191011874 - L2 LINE L2 0 3272 3138 321 283 17 42 chr4 11316913 11317033 -191011314 + MIR SINE MIR 81 197 -65 192 143 0 0 chr4 11317216 11317258 -191011089 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 27 0 0 0 chr4 11317491 11317518 -191010829 + AT_rich Low_complexity Low_complexity 1 27 0 273 345 65 14 chr4 11317661 11317800 -191010547 - MIR3 SINE MIR -47 161 16 926 168 50 40 chr4 11317972 11318174 -191010173 - MER20 DNA MER1_type -12 207 4 1494 166 20 16 chr4 11318867 11319120 -191009227 - Tigger3(Golem) DNA MER2_type -2 3027 2774 2818 99 30 22 chr4 11319121 11319601 -191008746 + MLT2A1 LTR ERVL 1 453 0 2619 137 42 15 chr4 11319601 11320081 -191008266 - Tigger3(Golem) DNA MER2_type -252 2777 2285 277 220 17 0 chr4 11320084 11320143 -191008204 - Tigger3(Golem) DNA MER2_type -2924 105 46 2635 130 37 47 chr4 11320527 11320957 -191007390 - MSTB LTR MaLR 0 426 1 923 169 0 0 chr4 11320984 11321138 -191007209 - MLT1B LTR MaLR 0 390 237 22 0 0 0 chr4 11321414 11321436 -191006911 + AT_rich Low_complexity Low_complexity 1 22 0 1482 230 11 0 chr4 11321482 11321839 -191006508 + L1M4 LINE L1 5043 5403 -743 596 253 68 12 chr4 11321844 11322006 -191006341 + MSTD LTR MaLR 1 171 -225 2228 107 3 3 chr4 11322016 11322324 -191006023 + AluSp SINE Alu 5 312 -1 342 328 23 0 chr4 11323337 11323465 -191004882 - L2 LINE L2 -1 3312 3182 760 321 19 25 chr4 11324661 11324918 -191003429 - MIR SINE MIR -6 256 1 198 258 76 15 chr4 11326997 11327063 -191001284 - MIR SINE MIR -90 172 103 236 67 0 0 chr4 11327123 11327153 -191001194 - L1PB4 LINE L1 0 6156 6119 2337 60 0 0 chr4 11327178 11327459 -191000888 - AluY SINE Alu -29 282 2 408 308 0 8 chr4 11327548 11327665 -191000682 - L2 LINE L2 -8 3305 3190 571 289 83 5 chr4 11327667 11327871 -191000476 - L2 LINE L2 -1375 1939 1720 1410 259 72 52 chr4 11327871 11328326 -191000021 + MLT2B1 LTR ERVL 1 468 -52 360 0 0 0 chr4 11328326 11328366 -190999981 + (TC)n Simple_repeat Simple_repeat 1 40 0 1410 259 72 52 chr4 11328366 11328412 -190999935 + MLT2B1 LTR ERVL 468 512 -8 408 246 25 91 chr4 11328421 11328620 -190999727 - L2 LINE L2 -1590 1724 1539 1508 247 82 7 chr4 11328626 11329055 -190999292 + MLT1C LTR MaLR 7 467 0 260 254 87 16 chr4 11380185 11380311 -190948036 - L1ME4a LINE L1 -203 5918 5784 268 269 56 19 chr4 11380319 11380427 -190947920 - MLT1F LTR MaLR -428 114 3 2196 110 10 0 chr4 11380550 11380842 -190947505 - AluSp SINE Alu -18 295 1 2015 113 16 0 chr4 11380842 11381160 -190947187 + L1MA8 LINE L1 5460 5782 -509 317 186 14 0 chr4 11381161 11381231 -190947116 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 241 146 55 0 chr4 11381231 11381286 -190947061 - LTR66 LTR ERVL -171 439 382 1247 146 0 47 chr4 11381286 11381431 -190946916 + L1MA8 LINE L1 5800 5929 -362 2386 117 17 3 chr4 11381431 11381789 -190946558 - THE1B LTR MaLR 0 364 2 1247 146 0 47 chr4 11381789 11381897 -190946450 + L1MA8 LINE L1 5929 6041 -250 413 112 124 0 chr4 11381901 11381990 -190946357 + L1MA8 LINE L1 6186 6285 -6 2078 151 19 26 chr4 11382458 11382836 -190945511 + THE1C LTR MaLR 1 375 0 273 208 26 13 chr4 11382971 11383048 -190945299 + MLT1I LTR MaLR 90 167 -242 698 207 30 0 chr4 11383414 11383578 -190944769 - L1MB4 LINE L1 -1 6179 6011 24 0 0 0 chr4 11384813 11384837 -190943510 + AT_rich Low_complexity Low_complexity 1 24 0 34 42 0 0 chr4 11385408 11385456 -190942891 + AT_rich Low_complexity Low_complexity 1 48 0 242 240 0 67 chr4 11385875 11385950 -190942397 + MIR3 SINE MIR 99 168 -40 391 116 66 0 chr4 11386219 11386340 -190942007 + (TA)n Simple_repeat Simple_repeat 2 130 0 968 280 86 7 chr4 11386846 11387253 -190941094 + MLT1L LTR MaLR 135 573 -42 569 355 58 37 chr4 11387347 11387725 -190940622 - L2 LINE L2 -39 3274 2889 1538 306 72 25 chr4 11387771 11388629 -190939718 + L1ME1 LINE L1 90 988 -5408 332 249 93 71 chr4 11388755 11389120 -190939227 + L1ME1 LINE L1 1121 1493 -4722 2299 105 3 0 chr4 11389127 11389433 -190938914 + AluSq SINE Alu 1 307 -6 613 282 94 66 chr4 11389482 11389994 -190938353 + L1ME1 LINE L1 2992 3510 -2705 1599 205 23 6 chr4 11390012 11390359 -190937988 + MLT1A1 LTR MaLR 12 364 -1 2482 249 45 37 chr4 11390363 11391551 -190936796 + L1ME1 LINE L1 3524 4721 -1494 1362 96 0 16 chr4 11391551 11391765 -190936582 + AluY SINE Alu 100 310 0 2311 254 47 20 chr4 11391765 11393258 -190935089 + L1ME1 LINE L1 4717 6403 0 234 379 21 0 chr4 11393267 11393362 -190934985 - L2 LINE L2 -467 2847 2751 262 285 130 33 chr4 11393418 11393615 -190934732 - MIR SINE MIR -21 241 24 2420 85 3 0 chr4 11394205 11394512 -190933835 + AluSp SINE Alu 1 308 -5 207 119 34 17 chr4 11394874 11394933 -190933414 + (TA)n Simple_repeat Simple_repeat 1 60 0 348 315 0 9 chr4 11395345 11395456 -190932891 - MIR3 SINE MIR -16 192 83 230 269 127 52 chr4 11396920 11397054 -190931293 - MIR3 SINE MIR -30 178 35 658 282 6 6 chr4 11397591 11397754 -190930593 - MIR SINE MIR -8 254 92 375 320 133 49 chr4 11397777 11397980 -190930367 + L3 LINE CR1 1287 1506 -71 1140 218 10 95 chr4 11399092 11399491 -190928856 - MLT1A1 LTR MaLR 0 365 1 342 339 70 23 chr4 11399516 11399687 -190928660 - MIR SINE MIR -82 180 2 25 0 0 0 chr4 11400154 11400179 -190928168 + AT_rich Low_complexity Low_complexity 1 25 0 186 43 0 0 chr4 11400195 11400218 -190928129 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 389 216 54 61 chr4 11400862 11401010 -190927337 + MLT2C1 LTR ERVL 1 147 -250 * 509 206 8 53 chr4 11400908 11401039 -190927308 + MLT1F LTR MaLR 73 250 -404 28798 113 10 13 chr4 11401643 11406457 -190921890 - L1P3 LINE L1 -697 5457 658 1541 205 20 7 chr4 11406457 11406755 -190921592 - AluJb SINE Alu -10 302 1 205 343 14 0 chr4 11406950 11407023 -190921324 + MER5A DNA MER1_type 113 186 -3 349 329 136 28 chr4 11407071 11407284 -190921063 + MIR SINE MIR 16 251 -11 999 194 12 40 chr4 11407456 11407709 -190920638 + L1MA10 LINE L1 6079 6324 -10 190 237 51 17 chr4 11408519 11408578 -190919769 - MIR SINE MIR -94 168 108 228 35 0 0 chr4 11409698 11409727 -190918620 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 261 0 0 0 chr4 11409726 11409755 -190918592 + (GA)n Simple_repeat Simple_repeat 2 30 0 1229 216 39 35 chr4 11410762 11411100 -190917247 + MLT1F LTR MaLR 204 542 0 207 306 49 49 chr4 11411126 11411270 -190917077 - MIR SINE MIR -29 233 90 2090 103 7 0 chr4 11411380 11411652 -190916695 + AluSg1 SINE Alu 1 274 -35 243 0 0 0 chr4 11411652 11411679 -190916668 + (TA)n Simple_repeat Simple_repeat 1 27 0 312 70 0 0 chr4 11411852 11411895 -190916452 + (TG)n Simple_repeat Simple_repeat 2 44 0 368 255 20 26 chr4 11412164 11412317 -190916030 - LTR16C LTR ERVL 0 491 340 1623 202 7 7 chr4 11412474 11412776 -190915571 - AluJo SINE Alu -10 302 1 216 0 0 0 chr4 11413565 11413589 -190914758 + (A)n Simple_repeat Simple_repeat 1 24 0 456 322 111 10 chr4 11413744 11413952 -190914395 + MIR SINE MIR 13 241 -21 1639 127 70 0 chr4 11414209 11414539 -190913808 - AluSx SINE Alu 0 312 30 187 273 18 18 chr4 11414666 11414721 -190913626 - L2 LINE L2 -17 3296 3242 254 242 0 0 chr4 11414745 11414807 -190913540 + MER4-int LTR ERV1 1103 1164 -5434 686 228 133 71 chr4 11414823 11415221 -190913126 - MLT1D LTR MaLR -3 464 33 180 97 0 0 chr4 11415251 11415282 -190913065 + (TCTCTG)n Simple_repeat Simple_repeat 2 32 0 329 212 0 10 chr4 11415282 11415381 -190912966 + (TA)n Simple_repeat Simple_repeat 2 99 0 1468 225 68 68 chr4 11416433 11416992 -190911355 + MER68 LTR ERV1 4 562 0 321 286 19 65 chr4 11417027 11417181 -190911166 - MIR SINE MIR -83 179 33 289 281 104 36 chr4 11418076 11418249 -190910098 - MIR SINE MIR -63 145 1 4104 108 22 3 chr4 11418354 11418985 -190909362 + L1PA14 LINE L1 5460 6102 -59 461 212 0 0 chr4 11419313 11419431 -190908916 + L1PA14 LINE L1 6044 6161 0 2071 142 7 3 chr4 11419462 11419764 -190908583 - AluSp SINE Alu -10 303 1 317 87 0 0 chr4 11420077 11420123 -190908224 - MADE1 DNA Mariner 0 80 35 30 83 0 0 chr4 11420123 11420195 -190908152 + AT_rich Low_complexity Low_complexity 1 72 0 242 346 29 0 chr4 11420300 11420404 -190907943 - MIR SINE MIR -21 241 135 40512 36 22 2 chr4 11420409 11426432 -190901915 - L1PA2 LINE L1 0 6155 13 1881 209 83 9 chr4 11426698 11427133 -190901214 - MLT1C LTR MaLR 0 467 1 864 285 13 4 chr4 11427144 11427372 -190900975 + MIR SINE MIR 16 245 -17 22 56 0 0 chr4 11427541 11427577 -190900770 + AT_rich Low_complexity Low_complexity 1 36 0 885 112 6 19 chr4 11427584 11427745 -190900602 + (GAAA)n Simple_repeat Simple_repeat 1 159 0 327 312 0 32 chr4 11427906 11427999 -190900348 + L2 LINE L2 3221 3310 -3 328 326 17 6 chr4 11428013 11428191 -190900156 + L1ME4a LINE L1 5597 5776 -345 1712 229 79 15 chr4 11428228 11428699 -190899648 + MLT1D LTR MaLR 5 505 0 357 269 168 19 chr4 11428933 11429141 -190899206 + L1ME4a LINE L1 5833 6071 -50 467 345 82 9 chr4 11429684 11429916 -190898431 + MIR SINE MIR 12 260 -2 2973 194 94 65 chr4 11430062 11430942 -190897405 - MER21A LTR ERV1 -25 906 1 29 0 0 0 chr4 11431440 11431469 -190896878 + AT_rich Low_complexity Low_complexity 1 29 0 315 274 100 58 chr4 11431746 11431936 -190896411 + MIR SINE MIR 52 249 -13 330 298 0 0 chr4 11432153 11432237 -190896110 + MIR SINE MIR 112 195 -67 340 273 62 31 chr4 11432751 11432879 -190895468 - L2 LINE L2 -1 3271 3140 284 224 86 0 chr4 11433004 11433062 -190895285 + L2 LINE L2 3146 3208 -64 211 239 15 45 chr4 11433175 11433242 -190895105 - MIR SINE MIR -168 94 30 391 336 98 46 chr4 11433350 11433898 -190894449 + L2 LINE L2 2399 2975 -339 589 292 60 23 chr4 11433929 11434145 -190894202 + MIR SINE MIR 15 238 -24 976 191 11 6 chr4 11434157 11434340 -190894007 + MER5A DNA MER1_type 6 189 0 464 319 47 13 chr4 11434518 11434826 -190893521 - L1ME LINE L1 -554 5593 5285 23 0 0 0 chr4 11434933 11434956 -190893391 + AT_rich Low_complexity Low_complexity 1 23 0 424 244 92 9 chr4 11434978 11435195 -190893152 - L1ME LINE L1 -2180 3949 3715 274 242 30 0 chr4 11435351 11435417 -190892930 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 333 294 106 39 chr4 11435712 11435892 -190892455 - L1ME LINE L1 -3049 3080 2889 508 273 150 48 chr4 11435998 11436225 -190892122 + MIR SINE MIR 13 262 0 290 276 24 32 chr4 11436505 11436628 -190891719 - L1ME LINE L1 -5957 162 41 236 53 26 0 chr4 11436707 11436745 -190891602 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 4969 16 7 0 chr4 11436745 11437310 -190891037 - L1PA3 LINE L1 -13 6142 5574 4908 33 0 3 chr4 11437310 11437953 -190890394 + L1P LINE L1 3055 3695 -2451 300 188 0 0 chr4 11438163 11438232 -190890115 + (TA)n Simple_repeat Simple_repeat 2 70 0 281 277 0 0 chr4 11438328 11438393 -190889954 + GA-rich Low_complexity Low_complexity 1 65 0 1109 203 48 48 chr4 11438555 11438913 -190889434 - MLT1A1 LTR MaLR 0 428 3 714 250 19 0 chr4 11439066 11439226 -190889121 - MIR SINE MIR -87 175 13 252 338 39 0 chr4 11439232 11439309 -190889038 - MIR SINE MIR -171 91 12 22 35 0 0 chr4 11439551 11439580 -190888767 + AT_rich Low_complexity Low_complexity 1 29 0 218 200 0 0 chr4 11439629 11439669 -190888678 + MIR SINE MIR 104 143 -65 211 359 13 0 chr4 11439748 11439826 -190888521 - MIR SINE MIR -181 81 3 198 71 0 0 chr4 11439959 11439987 -190888360 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr4 11440012 11440035 -190888312 + AT_rich Low_complexity Low_complexity 1 23 0 1619 202 16 35 chr4 11440188 11440560 -190887787 + MLT1A1 LTR MaLR 1 365 0 1102 280 90 55 chr4 11440560 11441124 -190887223 + MLT1E LTR MaLR 4 591 -2 2214 91 46 0 chr4 11441372 11441657 -190886690 - AluY SINE Alu -13 298 1 2254 124 22 22 chr4 11441837 11442201 -190886146 + THE1B LTR MaLR 1 364 0 342 349 18 0 chr4 11442783 11442892 -190885455 - MIR SINE MIR -101 161 51 192 293 131 76 chr4 11443437 11443635 -190884712 + L2 LINE L2 3056 3264 -8 2032 133 14 0 chr4 11443651 11443936 -190884411 - AluSx SINE Alu -9 303 15 341 312 9 0 chr4 11444052 11444161 -190884186 - MIR SINE MIR -70 192 83 323 330 20 0 chr4 11444615 11444715 -190883632 - MIR SINE MIR -140 122 21 308 311 119 6 chr4 11445346 11445523 -190882824 + MIR SINE MIR 57 253 -9 218 237 0 17 chr4 11445792 11445851 -190882496 + (TAA)n Simple_repeat Simple_repeat 2 59 0 347 324 68 33 chr4 11446071 11446407 -190881940 - ERVL LTR ERVL -1312 4452 4105 1940 171 3 19 chr4 11447057 11447367 -190880980 - AluSx SINE Alu -7 305 1 330 71 0 295 chr4 11447810 11447869 -190880478 + MADE1 DNA Mariner 2 14 -66 2261 109 7 0 chr4 11447869 11448171 -190880176 - AluSg SINE Alu -6 304 1 330 71 0 295 chr4 11448171 11448223 -190880124 + MADE1 DNA Mariner 14 80 0 734 230 0 90 chr4 11448344 11448566 -190879781 + MER63A DNA MER1_type 3 204 -6 203 316 0 0 chr4 11449121 11449178 -190879169 - L2 LINE L2 0 3272 3216 2148 119 3 0 chr4 11451516 11451811 -190876536 + AluSx SINE Alu 3 298 -14 180 321 147 27 chr4 11451891 11452075 -190876272 + MIR SINE MIR 45 250 -12 2085 89 0 7 chr4 11452344 11452614 -190875733 + AluSp SINE Alu 39 306 -7 2079 39 0 4 chr4 11453031 11453310 -190875037 - L1PA5 LINE L1 -3574 2572 2295 * 17628 56 2 5 chr4 11453309 11456787 -190871560 + L1PA5 LINE L1 2599 6150 -4 454 272 8 0 chr4 11456881 11457006 -190871341 - MLT1J1 LTR MaLR -117 329 204 198 370 14 0 chr4 11457186 11457259 -190871088 + MIR SINE MIR 10 83 -179 473 320 66 5 chr4 11458604 11458917 -190869430 - L1MC/D LINE L1 -657 5585 5258 3690 182 92 1 chr4 11459032 11459789 -190868558 - LTR1B LTR ERV1 0 826 1 388 347 42 21 chr4 11460451 11460644 -190867703 - L2 LINE L2 -474 2840 2644 231 36 0 0 chr4 11461303 11461331 -190867016 + (CA)n Simple_repeat Simple_repeat 1 28 0 248 244 37 96 chr4 11461346 11461481 -190866866 + MIR SINE MIR 68 194 -68 1898 122 28 106 chr4 11462071 11462466 -190865881 + THE1B LTR MaLR 1 364 0 224 301 60 24 chr4 11462482 11462565 -190865782 + L2 LINE L2 2936 3021 -251 283 362 28 28 chr4 11462818 11462959 -190865388 - L2 LINE L2 -5 3267 3127 298 259 27 45 chr4 11462989 11463101 -190865246 + L2 LINE L2 3200 3309 -4 228 35 0 0 chr4 11463476 11463505 -190864842 + (CA)n Simple_repeat Simple_repeat 1 29 0 235 253 40 27 chr4 11464673 11464748 -190863599 - MIR SINE MIR -12 250 175 220 280 0 0 chr4 11465650 11465700 -190862647 - L2 LINE L2 -4 3268 3219 644 264 92 50 chr4 11465835 11466259 -190862088 - MLT1C LTR MaLR 0 467 14 494 300 32 16 chr4 11466446 11466636 -190861711 + MIR SINE MIR 22 214 -48 341 331 6 6 chr4 11467590 11467771 -190860576 + LTR33 LTR ERVL 322 502 -19 392 260 135 0 chr4 11469031 11469135 -190859212 + MIR SINE MIR 32 149 -113 229 270 27 0 chr4 11469598 11469672 -190858675 - MLT1H LTR MaLR -195 354 279 4119 212 58 8 chr4 11471556 11472527 -190855820 - MER45B DNA AcHobo -18 1022 4 437 331 32 50 chr4 11472567 11472773 -190855574 - MIR SINE MIR -39 223 15 5455 109 11 6 chr4 11473076 11473478 -190854869 - L1PA7 LINE L1 -63 6091 5692 1853 134 33 4 chr4 11473478 11473785 -190854562 + AluSq SINE Alu 1 315 0 5455 109 11 6 chr4 11473785 11474815 -190853532 - L1PA7 LINE L1 -462 5692 4656 290 200 11 84 chr4 11475061 11475083 -190853264 - MER94 DNA DNA -40 94 72 1852 171 26 0 chr4 11475083 11475387 -190852960 - AluSx SINE Alu 0 312 1 290 200 11 84 chr4 11475387 11475459 -190852888 - MER94 DNA DNA -62 72 7 496 234 16 40 chr4 11475518 11475642 -190852705 + L2 LINE L2 3193 3313 0 251 329 67 34 chr4 11475911 11476060 -190852287 - L2 LINE L2 -541 2773 2620 300 138 0 0 chr4 11476275 11476333 -190852014 + L1MA4 LINE L1 6237 6294 -6 2083 130 3 29 chr4 11478078 11478394 -190849953 + AluSx SINE Alu 1 308 -4 1654 168 11 4 chr4 11478598 11478872 -190849475 - AluJo SINE Alu -8 304 29 2019 156 0 0 chr4 11479277 11479572 -190848775 - AluSx SINE Alu -17 295 1 903 198 13 13 chr4 11479683 11479921 -190848426 - Ricksha DNA DNA -13 2841 2604 * 6524 155 26 21 chr4 11479920 11480584 -190847763 - Ricksha DNA DNA -290 2956 2280 204 40 0 0 chr4 11480584 11480609 -190847738 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6524 155 26 21 chr4 11480609 11481204 -190847143 - Ricksha DNA DNA -966 2280 1690 322 47 0 0 chr4 11481203 11481246 -190847101 - Ricksha DNA DNA -969 285 243 * 266 121 0 69 chr4 11481246 11481261 -190847086 - ERVL LTR ERVL -68 5696 5643 267 229 0 0 chr4 11481266 11481336 -190847011 - Ricksha DNA DNA -1943 103 34 671 372 62 34 chr4 11481797 11482437 -190845910 + L2 LINE L2 2654 3313 0 193 313 0 47 chr4 11482541 11482605 -190845742 - MIR3 SINE MIR -142 66 6 2305 167 62 2 chr4 11482882 11483284 -190845063 - MSTB LTR MaLR 0 426 1 467 210 68 0 chr4 11483445 11483564 -190844783 + MIR SINE MIR 4 135 -73 272 259 172 52 chr4 11483576 11483692 -190844655 + MIR SINE MIR 111 240 -22 189 323 48 0 chr4 11483712 11483774 -190844573 + L2 LINE L2 3194 3258 -14 1841 182 41 51 chr4 11483810 11484278 -190844069 - MLT1C LTR MaLR -4 463 1 249 317 18 18 chr4 11484849 11485083 -190843264 + CT-rich Low_complexity Low_complexity 1 234 0 4018 205 26 5 chr4 11485136 11485981 -190842366 + MER6 DNA MER2_type 1 863 -2 529 100 22 0 chr4 11486181 11486271 -190842076 + (TCCCC)n Simple_repeat Simple_repeat 3 94 0 396 0 0 0 chr4 11486455 11486499 -190841848 + (TG)n Simple_repeat Simple_repeat 1 44 0 306 278 31 0 chr4 11486499 11486596 -190841751 - L1MC3 LINE L1 -1140 6645 6546 196 385 122 0 chr4 11488849 11489005 -190839342 + MIR SINE MIR 88 262 0 707 167 25 0 chr4 11490651 11490813 -190837534 + (TGGA)n Simple_repeat Simple_repeat 1 166 0 626 98 29 0 chr4 11491583 11491685 -190836662 + CT-rich Low_complexity Low_complexity 2 106 0 1200 73 17 0 chr4 11491688 11491865 -190836482 + (TTC)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chr4 11492357 11492378 -190835969 + AT_rich Low_complexity Low_complexity 1 21 0 205 371 19 9 chr4 11492537 11492642 -190835705 - MER5C DNA MER1_type -200 124 19 1993 94 0 4 chr4 11493315 11493581 -190834766 + AluY SINE Alu 44 308 -3 286 301 104 43 chr4 11494089 11494139 -190834208 + LTR16B LTR ERVL 116 162 -302 1455 257 34 5 chr4 11494139 11494524 -190833823 + MSTD LTR MaLR 1 396 0 286 301 104 43 chr4 11494524 11494752 -190833595 + LTR16B LTR ERVL 162 411 -53 40517 37 21 2 chr4 11494771 11500803 -190827544 - L1PA3 LINE L1 -2 6153 3 2889 201 59 10 chr4 11501174 11501847 -190826500 - L1MCa LINE L1 -5690 736 31 434 349 30 20 chr4 11501859 11501997 -190826350 + HERV16 LTR ERVL 910 1045 -3951 1926 142 50 36 chr4 11501997 11502356 -190825991 - THE1B LTR MaLR 0 364 1 434 349 30 20 chr4 11502356 11502706 -190825641 + HERV16 LTR ERVL 1045 1429 -3567 2332 91 3 0 chr4 11502985 11503283 -190825064 - AluSq SINE Alu -14 299 1 1185 240 59 81 chr4 11503757 11504302 -190824045 - LTR55 LTR ERV -15 533 1 1166 140 96 19 chr4 11504786 11505057 -190823290 - L1MA9 LINE L1 -3 6309 6018 258 269 39 39 chr4 11506178 11506274 -190822073 - MIR SINE MIR -93 115 22 753 135 0 0 chr4 11507209 11507372 -190820975 + (GA)n Simple_repeat Simple_repeat 2 164 0 218 302 0 0 chr4 11507969 11508022 -190820325 + MIR SINE MIR 76 128 -134 1345 225 82 13 chr4 11510202 11510631 -190817716 + MER89 LTR ERV1 1 559 0 213 39 0 0 chr4 11510659 11510685 -190817662 + (CAA)n Simple_repeat Simple_repeat 2 27 0 300 27 0 0 chr4 11510900 11510937 -190817410 + (CA)n Simple_repeat Simple_repeat 2 38 0 281 319 54 54 chr4 11511552 11511718 -190816629 + MIR3 SINE MIR 30 195 -13 258 311 45 38 chr4 11512496 11512628 -190815719 + L2 LINE L2 2341 2473 -841 468 276 85 15 chr4 11512631 11512830 -190815517 - MLT1K LTR MaLR 0 588 376 215 431 26 0 chr4 11513100 11513253 -190815094 + L2 LINE L2 2476 2632 -682 2076 139 11 22 chr4 11513253 11513612 -190814735 + THE1A LTR MaLR 1 355 0 322 164 31 63 chr4 11514399 11514558 -190813789 + (TTATA)n Simple_repeat Simple_repeat 1 154 0 184 158 66 0 chr4 11514560 11514636 -190813711 + (TA)n Simple_repeat Simple_repeat 1 81 0 225 328 103 0 chr4 11515946 11516062 -190812285 - MIR SINE MIR -11 251 124 261 273 27 0 chr4 11516959 11517069 -190811278 + (TA)n Simple_repeat Simple_repeat 2 114 0 319 280 110 8 chr4 11517296 11517414 -190810933 - MIR SINE MIR -67 195 66 293 68 23 0 chr4 11517490 11517534 -190810813 + (CA)n Simple_repeat Simple_repeat 2 46 0 236 325 113 6 chr4 11518009 11518169 -190810178 - MIR SINE MIR -66 196 20 24 0 0 0 chr4 11518254 11518278 -190810069 + AT_rich Low_complexity Low_complexity 1 24 0 380 296 44 15 chr4 11518516 11518651 -190809696 + MIR SINE MIR 46 184 -78 357 317 49 40 chr4 11518647 11518851 -190809496 + MIR SINE MIR 11 217 -45 * 23650 31 0 2 chr4 11519317 11522962 -190805385 - L1PA2 LINE L1 0 6155 2517 2875 28 0 0 chr4 11522962 11523326 -190805021 + L1PA2 LINE L1 2151 2514 -3632 1774 171 55 24 chr4 11524227 11524690 -190803657 + MLT2A2 LTR ERVL 21 515 0 258 394 31 8 chr4 11526685 11526812 -190801535 + L2 LINE L2 3141 3270 -2 201 147 0 0 chr4 11526812 11526846 -190801501 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr4 11526942 11526963 -190801384 + AT_rich Low_complexity Low_complexity 1 21 0 386 367 0 43 chr4 11527729 11527939 -190800408 + MIR SINE MIR 20 220 -42 351 279 49 25 chr4 11527993 11528115 -190800232 + MIR SINE MIR 74 198 -64 241 224 239 0 chr4 11528115 11528182 -190800165 + Tigger3(Golem) DNA MER2_type 1 83 -2946 1469 144 46 25 chr4 11528200 11528484 -190799863 + Tigger3(Golem) DNA MER2_type 2738 3027 -2 2234 128 0 0 chr4 11528485 11528791 -190799556 + AluY SINE Alu 1 306 -5 229 250 119 0 chr4 11528871 11528955 -190799392 + MIR SINE MIR 108 201 -61 204 292 50 83 chr4 11529499 11529619 -190798728 + MIR SINE MIR 34 149 -113 2107 107 0 27 chr4 11530288 11530588 -190797759 - AluSx SINE Alu -20 292 1 3756 191 38 24 chr4 11530659 11531441 -190796906 + MER54B LTR ERVL 1 793 0 197 366 0 32 chr4 11531619 11531712 -190796635 + L3 LINE CR1 1254 1343 -234 1014 269 32 19 chr4 11532120 11532429 -190795918 + L2 LINE L2 3001 3313 0 1707 215 10 43 chr4 11533166 11533580 -190794767 + MLT1B-int LTR MaLR 1335 1734 -1 1143 199 48 57 chr4 11533610 11533962 -190794385 + MLT1B LTR MaLR 42 390 0 296 331 14 36 chr4 11534371 11534510 -190793837 + MIR SINE MIR 34 169 -93 187 273 91 55 chr4 11534574 11534684 -190793663 + L2 LINE L2 3156 3269 -3 21 36 0 0 chr4 11535047 11535075 -190793272 + AT_rich Low_complexity Low_complexity 1 28 0 1084 235 73 32 chr4 11535508 11535677 -190792670 - MLT1A2 LTR MaLR -19 355 194 381 43 0 0 chr4 11535677 11535724 -190792623 + (GA)n Simple_repeat Simple_repeat 2 48 0 1084 235 73 32 chr4 11535724 11535895 -190792452 - MLT1A2 LTR MaLR -180 194 1 771 259 14 9 chr4 11536128 11536340 -190792007 + MER20 DNA MER1_type 6 218 -1 302 283 142 9 chr4 11536599 11536712 -190791635 - MIR3 SINE MIR -67 141 14 201 195 0 0 chr4 11536712 11536753 -190791594 + T-rich Low_complexity Low_complexity 1 41 0 324 284 53 0 chr4 11536971 11537066 -190791281 + MIR SINE MIR 75 174 -88 368 169 0 0 chr4 11537202 11537261 -190791086 + Tigger3(Golem) DNA MER2_type 2 60 -2969 306 345 83 13 chr4 11537730 11537959 -190790388 - L1MEc LINE L1 -4884 1512 1268 239 113 84 56 chr4 11539011 11539082 -190789265 + (TTAAA)n Simple_repeat Simple_repeat 1 73 0 519 156 16 31 chr4 11539872 11540000 -190788347 + CT-rich Low_complexity Low_complexity 1 126 0 1995 199 14 7 chr4 11540341 11540773 -190787574 + L1MA9 LINE L1 5498 5932 -380 962 185 0 0 chr4 11540787 11541134 -190787213 + AluSp SINE Alu 137 313 0 1461 205 33 3 chr4 11541160 11541491 -190786856 + L1MA9 LINE L1 5936 6276 -36 2492 149 29 5 chr4 11541515 11541930 -190786417 + MSTA LTR MaLR 1 425 -3 298 218 100 65 chr4 11543208 11543378 -190784969 + MIR SINE MIR 35 210 -52 796 323 52 17 chr4 11543453 11543815 -190784532 + LTR16C LTR ERVL 6 380 -111 231 368 61 9 chr4 11545386 11545500 -190782847 + MIR3 SINE MIR 5 124 -84 530 174 55 0 chr4 11545684 11545793 -190782554 - Tigger3(Golem) DNA MER2_type -1 3028 2914 1670 160 38 107 chr4 11545793 11546371 -190781976 - MLT2A2 LTR ERVL 0 554 1 1986 137 31 28 chr4 11546375 11546762 -190781585 - Tigger3(Golem) DNA MER2_type -112 2917 2530 244 27 0 0 chr4 11546867 11546904 -190781443 + L1PA2 LINE L1 6113 6149 -6 212 311 14 14 chr4 11547187 11547261 -190781086 + L2 LINE L2 3230 3303 -10 732 229 42 67 chr4 11547316 11548224 -190780123 + L1MC4a LINE L1 6441 7492 -316 424 114 0 0 chr4 11548224 11548294 -190780053 - L1MA4A LINE L1 -383 5919 5850 1842 139 26 23 chr4 11548295 11548647 -190779700 + L1MA4A LINE L1 5947 6299 -4 319 283 0 0 chr4 11548648 11548754 -190779593 + L1MC4 LINE L1 7565 7670 -372 1341 188 0 27 chr4 11548830 11549091 -190779256 - AluJo SINE Alu -14 298 45 301 288 192 0 chr4 11549091 11549216 -190779131 + L1MC4 LINE L1 7761 7909 -133 277 274 14 0 chr4 11549292 11549365 -190778982 + GA-rich Low_complexity Low_complexity 3 76 0 190 207 17 52 chr4 11549714 11549772 -190778575 + L3 LINE CR1 1245 1300 -277 191 36 36 0 chr4 11550318 11550346 -190778001 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 433 311 61 5 chr4 11550501 11550697 -190777650 - MIR SINE MIR -8 254 48 457 157 0 0 chr4 11550697 11550767 -190777580 + LTR42 LTR ERVL 72 141 -354 296 82 0 20 chr4 11551697 11551746 -190776601 + (CA)n Simple_repeat Simple_repeat 2 49 0 394 299 52 13 chr4 11551792 11551946 -190776401 + MIR SINE MIR 1 160 -102 2217 177 8 88 chr4 11551946 11552477 -190775870 + LTR42 LTR ERVL 1 488 -7 182 274 0 0 chr4 11552504 11552555 -190775792 + MIR SINE MIR 188 238 -24 1964 209 8 8 chr4 11552675 11553058 -190775289 + MLT1B LTR MaLR 8 390 0 2214 102 7 3 chr4 11553260 11553553 -190774794 + AluSc SINE Alu 1 294 -15 701 301 102 13 chr4 11553871 11554508 -190773839 - L1ME3 LINE L1 -265 5897 5198 311 302 101 17 chr4 11554608 11554787 -190773560 - L1ME3 LINE L1 -949 5197 5004 5575 163 12 6 chr4 11555386 11556424 -190771923 - L1MC1 LINE L1 -1 6332 5288 349 295 199 14 chr4 11557168 11557449 -190770898 - LTR33A LTR ERVL -53 470 138 1398 277 30 6 chr4 11557645 11558114 -190770233 - L1ME3 LINE L1 -11 6151 5672 261 246 15 0 chr4 11558114 11558179 -190770168 - LTR16A LTR ERVL 0 450 385 464 306 59 13 chr4 11558214 11558603 -190769744 - L1ME3 LINE L1 -2546 3600 3194 296 293 112 9 chr4 11558821 11558937 -190769410 + MIR SINE MIR 132 259 -3 237 258 73 44 chr4 11559191 11559442 -190768905 - L1ME LINE L1 -335 5786 5525 22 35 0 0 chr4 11559578 11559607 -190768740 + AT_rich Low_complexity Low_complexity 1 29 0 1170 297 63 20 chr4 11559973 11560760 -190767587 + L1M4 LINE L1 3597 4417 -1729 2213 140 8 36 chr4 11561427 11561813 -190766534 - THE1C LTR MaLR 0 375 1 337 320 133 7 chr4 11562756 11562906 -190765441 + MIR3 SINE MIR 39 207 -1 912 175 38 0 chr4 11563140 11563300 -190765047 + FAM SINE Alu 1 166 -9 23 33 0 0 chr4 11563867 11563897 -190764450 + AT_rich Low_complexity Low_complexity 1 30 0 242 268 42 28 chr4 11564142 11564213 -190764134 + MIR SINE MIR 41 112 -150 258 339 102 57 chr4 11564424 11564778 -190763569 + L3 LINE CR1 168 537 -1040 496 270 98 16 chr4 11564817 11565008 -190763339 - MIR SINE MIR -26 236 36 1326 199 73 3 chr4 11565089 11565416 -190762931 + MLT1C LTR MaLR 5 354 -113 2026 130 3 7 chr4 11565517 11565832 -190762515 + AluSx SINE Alu 7 312 0 2865 209 3 12 chr4 11565865 11566445 -190761902 + Tigger7 DNA MER2_type 1 575 -158 2163 127 0 0 chr4 11566446 11566738 -190761609 - AluSx SINE Alu -20 292 1 1024 154 29 0 chr4 11566741 11566949 -190761398 + Tigger7 DNA MER2_type 2272 2485 -2 274 366 20 0 chr4 11567196 11567297 -190761050 + L3 LINE CR1 968 1070 -507 302 325 77 22 chr4 11567722 11567996 -190760351 + MLT1L LTR MaLR 317 605 -10 241 334 94 48 chr4 11568055 11568447 -190759900 + L3 LINE CR1 1121 1530 -47 1708 171 40 40 chr4 11568479 11568854 -190759493 - THE1C LTR MaLR 0 375 1 252 0 0 0 chr4 11568995 11569023 -190759324 + (A)n Simple_repeat Simple_repeat 1 28 0 189 0 0 0 chr4 11569337 11569358 -190758989 + (A)n Simple_repeat Simple_repeat 1 21 0 454 176 0 11 chr4 11569481 11569572 -190758775 - MSTA LTR MaLR -338 90 1 252 0 0 0 chr4 11569714 11569742 -190758605 + (A)n Simple_repeat Simple_repeat 1 28 0 277 353 0 0 chr4 11570987 11571089 -190757258 + MIR SINE MIR 51 152 -110 657 193 64 70 chr4 11571318 11571489 -190756858 + MIR SINE MIR 36 205 -57 1698 181 101 16 chr4 11571495 11571882 -190756465 + MER52C LTR ERV1 28 447 -831 1104 131 11 21 chr4 11571873 11572064 -190756283 + MSTA LTR MaLR 236 424 -4 * 247 277 0 0 chr4 11572208 11572273 -190756074 - L2 LINE L2 -217 3055 2991 272 216 98 98 chr4 11572336 11572489 -190755858 + MIR SINE MIR 53 205 -57 257 274 37 89 chr4 11573928 11574198 -190754149 - L1ME LINE L1 -562 5602 5347 304 326 0 0 chr4 11574352 11574450 -190753897 - L1ME LINE L1 -1019 5127 5030 1042 175 5 37 chr4 11574717 11574934 -190753413 - MER20 DNA MER1_type -7 212 3 195 340 68 0 chr4 11574947 11575050 -190753297 + MIR SINE MIR 146 255 -7 393 288 88 33 chr4 11575882 11576097 -190752250 + MIR SINE MIR 18 244 -18 273 208 119 99 chr4 11578045 11578146 -190750201 + L2 LINE L2 3170 3272 0 472 256 36 26 chr4 11578189 11578384 -190749963 - LTR16B LTR ERVL 0 464 268 327 313 93 21 chr4 11578562 11578853 -190749494 - LTR16B LTR ERVL -136 328 17 732 316 40 40 chr4 11578947 11579520 -190748827 - HERV16 LTR ERVL -3049 1947 1428 629 338 31 13 chr4 11579731 11580048 -190748299 - HERV16 LTR ERVL -3932 1064 742 253 306 0 0 chr4 11580325 11580387 -190747960 - HERV16 LTR ERVL -4569 427 366 975 306 34 11 chr4 11580723 11581167 -190747180 - LTR16B LTR ERVL -3 461 8 237 382 39 17 chr4 11581637 11581815 -190746532 - MIR SINE MIR -13 249 68 1113 214 9 9 chr4 11581950 11582174 -190746173 - MER58A DNA MER1_type 0 224 1 247 309 43 53 chr4 11582212 11582306 -190746041 - MIR SINE MIR -83 125 33 698 269 29 14 chr4 11582814 11583022 -190745325 - MLT1A1 LTR MaLR -154 211 1 310 274 75 57 chr4 11583459 11583565 -190744782 + L2 LINE L2 3160 3267 -5 422 359 6 13 chr4 11583865 11584024 -190744323 - MIR SINE MIR -75 187 30 252 149 0 0 chr4 11584024 11584071 -190744276 + (TA)n Simple_repeat Simple_repeat 2 48 0 1902 138 0 0 chr4 11584853 11585121 -190743226 - AluSx SINE Alu -44 268 1 795 87 0 0 chr4 11585797 11585901 -190742446 + AluSg/x SINE Alu 199 302 -8 454 345 84 4 chr4 11587458 11587696 -190740651 + MIR SINE MIR 6 262 0 200 398 0 10 chr4 11587702 11587800 -190740547 - MIR SINE MIR -68 140 44 257 308 133 17 chr4 11588274 11588394 -190739953 + L2 LINE L2 2586 2719 -595 320 62 0 21 chr4 11588428 11588476 -190739871 + (TCCCC)n Simple_repeat Simple_repeat 2 48 0 43493 35 21 3 chr4 11588523 11594516 -190733831 + L1PA2 LINE L1 1 6105 -50 8130 217 42 52 chr4 11594616 11595787 -190732560 + Cheshire DNA MER1_type 190 1371 -1049 274 58 58 0 chr4 11595787 11595839 -190732508 + T-rich Low_complexity Low_complexity 5 59 0 8130 217 42 52 chr4 11595839 11596366 -190731981 + Cheshire DNA MER1_type 1371 1901 -519 7097 71 4 6 chr4 11596366 11597991 -190730356 - L1PA7 LINE L1 -3 6151 4504 1603 212 0 10 chr4 11597991 11598288 -190730059 - AluJo SINE Alu -17 295 2 8130 217 42 52 chr4 11598288 11598813 -190729534 + Cheshire DNA MER1_type 1899 2394 -26 264 272 213 13 chr4 11598842 11599081 -190729266 + L1MC4 LINE L1 7755 8041 -1 328 245 93 78 chr4 11599142 11599346 -190729001 + L2 LINE L2 3106 3312 -1 227 380 53 9 chr4 11599818 11599931 -190728416 - MIR SINE MIR -98 164 47 2334 98 7 0 chr4 11600336 11600642 -190727705 + AluSc SINE Alu 1 308 -1 578 241 247 26 chr4 11600724 11601068 -190727279 + L2 LINE L2 2875 3294 -19 180 331 78 39 chr4 11603972 11604126 -190724221 + L2 LINE L2 1542 1701 -1613 511 157 19 0 chr4 11604153 11604261 -190724086 + GA-rich Low_complexity Low_complexity 1 110 0 1236 243 73 9 chr4 11605070 11605412 -190722935 - MLT2D LTR ERVL -50 364 1 885 255 21 29 chr4 11605628 11605871 -190722476 + MIR SINE MIR 1 241 -21 985 263 0 40 chr4 11607374 11607674 -190720673 - MLT1B LTR MaLR -8 382 95 245 270 16 0 chr4 11607730 11607793 -190720554 - L1MCa LINE L1 -6360 66 3 211 279 139 0 chr4 11607826 11607912 -190720435 + L2 LINE L2 3194 3291 -22 542 230 68 110 chr4 11608126 11608398 -190719949 - L1 LINE L1 -827 5319 5060 2528 58 0 3 chr4 11608398 11608707 -190719640 + AluY SINE Alu 1 308 -3 542 230 68 110 chr4 11608707 11608743 -190719604 - L1 LINE L1 -1086 5060 5024 4144 173 53 17 chr4 11608744 11609010 -190719337 + L1MB1 LINE L1 5328 5583 -585 1330 172 118 8 chr4 11609010 11609272 -190719075 + AluSx SINE Alu 1 291 -21 4144 173 53 17 chr4 11609272 11609813 -190718534 + L1MB1 LINE L1 5583 6164 -4 255 245 0 0 chr4 11609853 11609902 -190718445 + MER58A DNA MER1_type 31 79 -28 1967 125 26 42 chr4 11611211 11611394 -190716953 - AluSx SINE Alu -5 307 130 2625 36 0 0 chr4 11611394 11611695 -190716652 - AluY SINE Alu -10 301 1 1967 125 26 42 chr4 11611695 11611823 -190716524 - AluSx SINE Alu -182 130 1 33 0 0 0 chr4 11612431 11612464 -190715883 + AT_rich Low_complexity Low_complexity 1 33 0 435 314 22 84 chr4 11612651 11613021 -190715326 + ERVL LTR ERVL 5034 5380 -384 203 319 0 0 chr4 11613074 11613143 -190715204 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 202 157 20 20 chr4 11613441 11613492 -190714855 + GA-rich Low_complexity Low_complexity 5 55 0 1829 200 72 15 chr4 11613699 11614159 -190714188 - L1MA9 LINE L1 -38 6274 5789 363 239 70 92 chr4 11614024 11614475 -190713872 - L1PB3 LINE L1 -230 5907 857 * 351 239 46 77 chr4 11614547 11614677 -190713670 + L2 LINE L2 3179 3304 -9 571 305 187 40 chr4 11614688 11615271 -190713076 - L1MEd LINE L1 -5389 730 62 439 179 205 46 chr4 11615371 11615522 -190712825 - HAL1 LINE L1 -1 2506 2332 251 254 79 74 chr4 11615772 11615961 -190712386 - Tigger1 DNA MER2_type -1374 1044 855 2359 288 118 45 chr4 11616644 11618337 -190710010 - HAL1 LINE L1 -591 1916 101 493 295 40 12 chr4 11618828 11619001 -190709346 - MER91B DNA MER1_type -12 178 1 321 89 0 0 chr4 11620047 11620092 -190708255 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 1680 190 7 0 chr4 11620092 11620371 -190707976 - AluJo SINE Alu -30 282 2 189 0 0 0 chr4 11621201 11621222 -190707125 + (TA)n Simple_repeat Simple_repeat 1 21 0 1852 176 48 38 chr4 11621655 11622210 -190706137 - MLT2A2 LTR ERVL 0 554 1 1976 176 0 97 chr4 11622465 11622897 -190705450 - MLT1B LTR MaLR 0 390 1 657 320 85 9 chr4 11623406 11623878 -190704469 + L2 LINE L2 2626 3123 -190 198 250 213 25 chr4 11624053 11624133 -190704214 - L2 LINE L2 0 3272 3178 375 333 38 25 chr4 11624244 11624484 -190703863 - MIR SINE MIR 0 262 20 469 369 48 34 chr4 11624600 11625064 -190703283 - L2 LINE L2 -78 3235 2767 562 300 53 37 chr4 11625087 11625410 -190702937 - L2 LINE L2 -660 2654 2327 914 292 72 57 chr4 11625420 11625933 -190702414 + LTR33 LTR ERVL 1 521 0 2505 74 0 0 chr4 11627044 11627355 -190700992 - AluY SINE Alu 0 311 1 273 357 18 53 chr4 11627444 11627615 -190700732 - MIR3 SINE MIR -6 202 38 481 264 170 13 chr4 11627691 11627850 -190700497 - MER5A DNA MER1_type -2 187 4 257 113 338 0 chr4 11628620 11628691 -190699656 + HSAT4 Satellite centromeric 1 95 -10 248 82 328 0 chr4 11628745 11628806 -190699541 + HSAT4 Satellite centromeric 1 81 -24 225 127 338 0 chr4 11629095 11629166 -190699181 + HSAT4 Satellite centromeric 1 95 -10 268 99 338 0 chr4 11629245 11629316 -190699031 + HSAT4 Satellite centromeric 1 95 -10 252 375 36 12 chr4 11629784 11629952 -190698395 + MIR SINE MIR 21 192 -70 230 342 128 0 chr4 11631000 11631149 -190697198 + L2 LINE L2 2619 2786 -528 228 344 0 0 chr4 11631460 11631524 -190696823 + MIR SINE MIR 76 139 -123 182 273 82 27 chr4 11631950 11632060 -190696287 + MIR SINE MIR 74 189 -73 21 0 0 0 chr4 11632131 11632152 -190696195 + AT_rich Low_complexity Low_complexity 1 21 0 475 179 15 123 chr4 11632747 11632942 -190695405 + MER96B DNA MER1_type? 244 417 0 2226 143 25 27 chr4 11633063 11633428 -190694919 - THE1B LTR MaLR 0 364 1 10716 111 6 27 chr4 11633428 11635042 -190693305 - THE1B-int LTR MaLR 0 1580 1 2035 128 22 38 chr4 11635044 11635412 -190692935 - THE1B LTR MaLR -2 362 1 231 146 24 0 chr4 11635485 11635526 -190692821 + L2 LINE L2 3270 3311 -2 344 132 0 0 chr4 11635712 11635765 -190692582 - MER53 DNA DNA 0 189 137 299 212 6 18 chr4 11635922 11636092 -190692255 + (TA)n Simple_repeat Simple_repeat 2 169 0 285 202 9 18 chr4 11636175 11636289 -190692058 + (TA)n Simple_repeat Simple_repeat 2 114 0 1513 191 75 0 chr4 11636297 11636616 -190691731 - MER2 DNA MER2_type 0 344 2 504 158 44 18 chr4 11636619 11636733 -190691614 - MER53 DNA DNA -72 117 1 328 188 59 40 chr4 11636921 11637022 -190691325 - MER94 DNA DNA -30 104 2 274 315 131 40 chr4 11637327 11637549 -190690798 + L2 LINE L2 3030 3271 -1 623 230 25 77 chr4 11638099 11638331 -190690016 - MIR SINE MIR -2 260 45 441 313 31 18 chr4 11638403 11638566 -190689781 - MIR SINE MIR -76 186 22 188 356 35 0 chr4 11638628 11638715 -190689632 + MIR3 SINE MIR 118 207 -1 451 312 43 29 chr4 11638894 11639032 -190689315 - L2 LINE L2 0 3272 3133 206 284 0 81 chr4 11639261 11639335 -190689012 - L2 LINE L2 -494 2820 2753 237 218 18 0 chr4 11639377 11639432 -190688915 + MIR SINE MIR 71 126 -136 1452 197 12 4 chr4 11639718 11639977 -190688370 + AluJo SINE Alu 1 261 -51 192 326 0 0 chr4 11640781 11640827 -190687520 - MIR SINE MIR -62 146 101 438 225 79 0 chr4 11641269 11641358 -190686989 + MER5A DNA MER1_type 14 109 -80 1230 219 139 39 chr4 11641425 11641785 -190686562 + MSTD LTR MaLR 1 396 0 213 311 162 20 chr4 11641792 11641940 -190686407 + MER5A DNA MER1_type 7 175 -14 210 250 0 0 chr4 11642381 11642485 -190685862 + (CA)n Simple_repeat Simple_repeat 1 104 0 202 305 17 17 chr4 11642668 11642727 -190685620 + MIR SINE MIR 95 153 -55 * 214 214 0 0 chr4 11642722 11642764 -190685583 + L2 LINE L2 3267 3308 -5 274 320 72 24 chr4 11643026 11643151 -190685196 - L2 LINE L2 0 3272 3142 225 184 0 0 chr4 11643415 11643453 -190684894 - MLT1I LTR MaLR -274 135 98 254 302 0 0 chr4 11643767 11643830 -190684517 + L2 LINE L2 3210 3272 0 287 292 138 23 chr4 11643951 11644081 -190684266 + L2 LINE L2 3118 3262 -10 426 342 53 25 chr4 11644294 11644873 -190683474 + L1ME2 LINE L1 5263 5867 -297 215 323 132 32 chr4 11645650 11645879 -190682468 + MIR3 SINE MIR 5 262 0 21 0 0 0 chr4 11647322 11647343 -190681004 + AT_rich Low_complexity Low_complexity 1 21 0 1783 162 0 4 chr4 11647349 11647648 -190680699 + AluSx SINE Alu 14 311 0 990 249 69 69 chr4 11647742 11648132 -190680215 + MLT1B LTR MaLR 1 390 0 2260 240 47 39 chr4 11648133 11648899 -190679448 - L1ME2 LINE L1 -22 6142 5371 808 290 116 28 chr4 11648915 11649759 -190678588 - L1ME2 LINE L1 -845 5301 4384 2198 273 89 34 chr4 11649882 11651184 -190677163 - L1ME2 LINE L1 -2098 4048 2675 33 0 0 0 chr4 11651562 11651595 -190676752 + AT_rich Low_complexity Low_complexity 1 33 0 317 325 77 36 chr4 11651857 11652051 -190676296 - MIR SINE MIR 0 262 61 576 43 0 0 chr4 11652565 11652634 -190675713 - LTR12 LTR ERV1 0 714 646 337 231 11 0 chr4 11652637 11652728 -190675619 + LTR30 LTR ERV1 552 643 -79 679 122 9 9 chr4 11652730 11652845 -190675502 + LTR12 LTR ERV1 482 596 -118 211 351 46 30 chr4 11652964 11653095 -190675252 + MIR SINE MIR 16 148 -114 1177 258 185 6 chr4 11653590 11654077 -190674270 - MLT1F1 LTR MaLR 0 567 1 798 264 95 20 chr4 11654330 11654678 -190673669 - L1ME4a LINE L1 -15 6106 5733 599 200 32 0 chr4 11655166 11655291 -190673056 + MER94 DNA DNA 1 129 -5 289 185 41 14 chr4 11655539 11655685 -190672662 + (TA)n Simple_repeat Simple_repeat 2 151 0 659 355 47 17 chr4 11656095 11656394 -190671953 + L1MA6 LINE L1 395 702 -6147 3474 245 50 46 chr4 11656622 11658177 -190670170 + L1MA6 LINE L1 1345 2892 -3956 2866 10 0 0 chr4 11658177 11658487 -190669860 - AluY SINE Alu -1 310 1 3474 245 50 46 chr4 11658487 11658732 -190669615 + L1MA6 LINE L1 2892 3155 -3693 672 115 0 0 chr4 11658732 11658836 -190669511 + (TA)n Simple_repeat Simple_repeat 1 104 0 3474 245 50 46 chr4 11658836 11658874 -190669473 + L1MA6 LINE L1 3155 3191 -3657 3055 202 17 17 chr4 11658870 11659959 -190668388 + L1MA6 LINE L1 5287 6370 -632 * 2432 194 11 11 chr4 11659969 11660417 -190667930 + L1MA3 LINE L1 16 463 -7102 608 140 11 0 chr4 11660419 11660512 -190667835 - AluSg SINE Alu -216 94 1 806 154 12 12 chr4 11660512 11660674 -190667673 + L1MA3 LINE L1 5631 5792 -1773 3126 123 18 22 chr4 11660674 11661221 -190667126 + L1MA3 LINE L1 7175 7724 0 2374 192 42 32 chr4 11661228 11661826 -190666521 + L1MA6 LINE L1 6399 7002 0 523 327 145 21 chr4 11662129 11662563 -190665784 - L3 LINE CR1 -824 753 266 26 0 0 0 chr4 11662661 11662687 -190665660 + AT_rich Low_complexity Low_complexity 1 26 0 2223 102 0 13 chr4 11663152 11663465 -190664882 - AluSc SINE Alu 0 309 1 188 377 44 50 chr4 11664587 11664746 -190663601 - MIR SINE MIR -80 182 25 1291 312 11 21 chr4 11665257 11665693 -190662654 - LTR16A LTR ERVL 0 450 19 849 156 172 11 chr4 11666369 11666549 -190661798 + MER4B LTR ERV1 1 209 -401 2358 243 39 15 chr4 11666552 11666895 -190661452 + L1MC/D LINE L1 3791 4124 -2022 6240 93 14 11 chr4 11666895 11668674 -190659673 + L1PA8 LINE L1 4359 6172 0 2358 243 39 15 chr4 11668674 11669134 -190659213 + L1MC/D LINE L1 4124 4613 -1533 246 235 12 0 chr4 11669134 11669215 -190659132 + (TA)n Simple_repeat Simple_repeat 2 83 0 445 194 112 8 chr4 11669217 11669351 -190658996 + L1MC/D LINE L1 4626 4773 -1373 2203 121 0 0 chr4 11669352 11669659 -190658688 + AluSx SINE Alu 3 309 -3 1069 253 54 0 chr4 11669679 11669976 -190658371 - MER58B DNA MER1_type -1 340 28 589 240 43 43 chr4 11670018 11670124 -190658223 + L1MC/D LINE L1 4827 4932 -1214 1583 115 0 0 chr4 11670124 11670342 -190658005 + AluSg/x SINE Alu 87 304 -8 589 240 43 43 chr4 11670342 11670489 -190657858 + L1MC/D LINE L1 4931 5080 -1066 335 180 104 17 chr4 11670523 11670612 -190657735 + L1MC/D LINE L1 5468 5561 -681 1393 266 96 29 chr4 11670620 11671213 -190657134 + L1ME1 LINE L1 5505 6137 -29 1046 314 109 14 chr4 11671279 11671840 -190656507 - L2 LINE L2 -1148 2166 1553 361 359 31 8 chr4 11672789 11672917 -190655430 - MIR SINE MIR -62 146 16 262 325 94 0 chr4 11673233 11673350 -190654997 + MIR SINE MIR 57 184 -78 213 231 0 0 chr4 11673423 11673462 -190654885 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 192 179 0 0 chr4 11673636 11673675 -190654672 + (CA)n Simple_repeat Simple_repeat 1 39 0 2465 186 9 17 chr4 11674507 11674974 -190653373 + MLT1C LTR MaLR 1 463 -4 246 357 10 10 chr4 11675042 11675140 -190653207 + MIR SINE MIR 8 105 -157 242 355 116 6 chr4 11675167 11675339 -190653008 + MIR SINE MIR 10 200 -62 207 100 0 0 chr4 11675721 11675751 -190652596 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 249 273 110 65 chr4 11675992 11676146 -190652201 - MIR SINE MIR -54 208 48 254 284 125 51 chr4 11676457 11676633 -190651714 + MIR SINE MIR 59 247 -15 216 0 0 0 chr4 11677496 11677520 -190650827 + (TG)n Simple_repeat Simple_repeat 2 25 0 344 366 43 26 chr4 11677888 11678120 -190650227 + L2 LINE L2 2617 2852 -462 387 0 0 0 chr4 11678747 11678790 -190649557 + (GA)n Simple_repeat Simple_repeat 2 44 0 232 306 125 44 chr4 11679202 11679450 -190648897 - L2 LINE L2 -1 3312 3045 261 287 72 20 chr4 11679746 11679853 -190648494 - MIR SINE MIR -63 145 54 912 255 0 0 chr4 11679853 11680053 -190648294 + MER58A DNA MER1_type 1 200 -24 23 33 0 0 chr4 11680297 11680327 -190648020 + AT_rich Low_complexity Low_complexity 1 30 0 822 40 0 0 chr4 11680449 11680548 -190647799 - L1P LINE L1 -1275 4871 4773 6791 14 18 0 chr4 11680548 11681331 -190647016 + L1PA2 LINE L1 5355 6151 -4 692 310 147 31 chr4 11681586 11682063 -190646284 - MLT1G1 LTR MaLR -3 592 61 257 292 12 0 chr4 11683238 11683337 -190645010 - MLT-int LTR MaLR -1229 142 43 719 276 109 23 chr4 11683459 11683724 -190644623 - MLT1G3 LTR MaLR -217 313 26 1080 334 55 27 chr4 11683889 11684523 -190643824 + MLT2F LTR ERVL 8 659 -4 21 0 0 0 chr4 11684543 11684564 -190643783 + AT_rich Low_complexity Low_complexity 1 21 0 313 315 77 8 chr4 11685172 11685302 -190643045 + MIR SINE MIR 47 185 -77 27 62 0 0 chr4 11685319 11685367 -190642980 + AT_rich Low_complexity Low_complexity 1 48 0 420 292 58 43 chr4 11686330 11686488 -190641859 + MIR3 SINE MIR 33 193 -15 4573 199 52 21 chr4 11687566 11688953 -190639394 - L1MC2 LINE L1 -13 6331 4912 1155 189 0 14 chr4 11688954 11689171 -190639176 - AluJo SINE Alu -4 308 95 231 326 31 20 chr4 11689538 11689636 -190638711 - L2 LINE L2 0 3313 3215 2453 109 8 16 chr4 11690075 11690442 -190637905 + THE1B LTR MaLR 1 364 0 259 330 35 17 chr4 11690650 11690765 -190637582 - MIR SINE MIR -138 124 8 749 264 52 62 chr4 11690988 11691295 -190637052 + LTR16C LTR ERVL 180 483 -8 203 300 78 11 chr4 11692376 11692466 -190635881 + MIR SINE MIR 100 195 -67 224 232 0 0 chr4 11693506 11693562 -190634785 + A-rich Low_complexity Low_complexity 1 56 0 225 0 0 0 chr4 11693671 11693696 -190634651 + (A)n Simple_repeat Simple_repeat 1 25 0 218 295 13 0 chr4 11693921 11693999 -190634348 + (TA)n Simple_repeat Simple_repeat 2 80 0 520 288 130 45 chr4 11695771 11696240 -190632107 + MLT1H LTR MaLR 13 521 -28 312 311 57 83 chr4 11697307 11697657 -190630690 + L1MEd LINE L1 54 394 -5725 325 262 86 0 chr4 11697928 11698044 -190630303 + L1ME LINE L1 5269 5395 -751 770 163 7 22 chr4 11698137 11698272 -190630075 + AluJ SINE Alu 1 133 -169 2489 113 51 0 chr4 11698272 11698889 -190629458 - L1PA8 LINE L1 -534 5597 4953 3842 97 5 7 chr4 11698889 11699443 -190628904 + L1PA8 LINE L1 5610 6165 -7 785 229 18 0 chr4 11699443 11699609 -190628738 + AluJ SINE Alu 135 303 -9 359 313 26 14 chr4 11699609 11699850 -190628497 + L1ME LINE L1 5443 5700 -470 1681 313 75 30 chr4 11700420 11701432 -190626915 + L2 LINE L2 2131 3205 -108 661 287 89 13 chr4 11701428 11701665 -190626682 - MIR SINE MIR -6 256 2 * 329 289 11 0 chr4 11701700 11701790 -190626557 + L2 LINE L2 3221 3311 -2 440 271 16 94 chr4 11701863 11702055 -190626292 + MIR SINE MIR 82 258 -4 1717 130 72 44 chr4 11702446 11702807 -190625540 + THE1C LTR MaLR 3 373 -2 242 243 95 0 chr4 11703118 11703192 -190625155 - MIR SINE MIR -79 183 103 181 287 183 37 chr4 11703241 11703405 -190624942 + MIR SINE MIR 25 212 -50 276 319 72 25 chr4 11704038 11704314 -190624033 - L1ME LINE L1 -320 5801 5513 1345 181 0 41 chr4 11705661 11705931 -190622416 - Tigger3(Golem) DNA MER2_type -1 3028 2770 1865 167 0 10 chr4 11706005 11706298 -190622049 + AluSx SINE Alu 1 290 -22 351 0 0 0 chr4 11706298 11706337 -190622010 + (CA)n Simple_repeat Simple_repeat 2 40 0 537 214 0 15 chr4 11706337 11706459 -190621888 + L1 LINE L1 3571 3695 -2451 248 159 32 0 chr4 11706473 11706536 -190621811 + L1 LINE L1 3673 3737 -2409 1488 136 0 14 chr4 11706544 11706757 -190621590 + AluSg/x SINE Alu 84 293 -17 2348 191 11 2 chr4 11706762 11707232 -190621115 + L1MA6 LINE L1 5827 6300 0 2347 131 38 8 chr4 11707232 11707704 -190620643 - Tigger3(Golem) DNA MER2_type -258 2771 2286 2311 79 24 0 chr4 11707991 11708283 -190620064 - AluY SINE Alu -12 299 1 612 167 0 0 chr4 11708629 11708731 -190619616 + AluSc SINE Alu 199 300 -9 2094 120 10 0 chr4 11709199 11709498 -190618849 - AluSg SINE Alu -8 302 1 22 0 0 0 chr4 11709503 11709525 -190618822 + AT_rich Low_complexity Low_complexity 1 22 0 232 359 23 23 chr4 11709767 11709895 -190618452 + MIR SINE MIR 12 139 -123 839 313 52 45 chr4 11710119 11710827 -190617520 + L2 LINE L2 2584 3299 -14 244 274 0 32 chr4 11711203 11711265 -190617082 + L2 LINE L2 3196 3255 -17 1502 91 55 0 chr4 11711789 11712008 -190616339 - L1PA11 LINE L1 -4 6170 5940 21 36 0 0 chr4 11713279 11713307 -190615040 + AT_rich Low_complexity Low_complexity 1 28 0 2119 126 0 0 chr4 11713383 11713669 -190614678 - AluSc SINE Alu -23 286 1 2780 10 0 0 chr4 11714135 11714437 -190613910 - AluYa5 SINE Alu -9 302 1 189 330 96 0 chr4 11714912 11715006 -190613341 + MIR SINE MIR 16 118 -90 220 301 0 32 chr4 11715112 11715205 -190613142 - MIR SINE MIR -44 218 129 2252 100 3 22 chr4 11715258 11715569 -190612778 + AluY SINE Alu 1 305 -6 514 291 42 0 chr4 11715650 11715815 -190612532 + MER5B DNA MER1_type 3 174 -4 310 222 78 132 chr4 11716700 11716867 -190611480 - MIR SINE MIR -82 180 23 2516 81 136 5 chr4 11717065 11717461 -190610886 + LTR7 LTR ERV1 1 448 -2 14450 101 26 21 chr4 11717463 11720261 -190608086 + HERVH LTR ERV1 1 2995 -4718 5964 77 3 5 chr4 11720240 11721095 -190607252 + HERVH LTR ERV1 3140 3993 -3720 * 4114 145 0 1 chr4 11721097 11721760 -190606587 + HERVH LTR ERV1 4488 5149 -2564 1249 140 28 0 chr4 11721761 11721975 -190606372 + HERVH LTR ERV1 5600 5819 -1894 2248 93 48 13 chr4 11721975 11722352 -190605995 + HERVH LTR ERV1 7324 7713 0 2531 85 128 5 chr4 11722352 11722751 -190605596 + LTR7 LTR ERV1 1 448 -2 238 171 32 32 chr4 11723837 11723960 -190604387 + (TA)n Simple_repeat Simple_repeat 2 124 0 45 0 0 0 chr4 11724022 11724067 -190604280 + AT_rich Low_complexity Low_complexity 1 45 0 249 202 39 51 chr4 11724072 11724250 -190604097 + (TATAG)n Simple_repeat Simple_repeat 2 177 0 * 302 176 27 85 chr4 11724208 11724396 -190603951 + (TATAA)n Simple_repeat Simple_repeat 2 178 0 * 354 197 33 55 chr4 11724332 11724515 -190603832 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 * 400 209 40 23 chr4 11724455 11724686 -190603661 + (TA)n Simple_repeat Simple_repeat 1 234 0 501 16 0 0 chr4 11725922 11725986 -190602361 + L1PA3 LINE L1 6089 6152 -3 437 237 0 11 chr4 11726281 11726374 -190601973 - MER5A DNA MER1_type -84 105 14 198 0 0 0 chr4 11726497 11726519 -190601828 + (T)n Simple_repeat Simple_repeat 1 22 0 2139 158 43 39 chr4 11726872 11727137 -190601210 - MLT1C LTR MaLR 0 467 198 2063 148 52 0 chr4 11727137 11727482 -190600865 + THE1B LTR MaLR 2 364 0 2139 158 43 39 chr4 11727482 11727679 -190600668 - MLT1C LTR MaLR -269 198 3 24 0 0 0 chr4 11728249 11728273 -190600074 + AT_rich Low_complexity Low_complexity 1 24 0 427 107 16 57 chr4 11729301 11729423 -190598924 + (TTC)n Simple_repeat Simple_repeat 2 118 0 534 288 86 38 chr4 11730407 11730699 -190597648 - L2 LINE L2 0 3313 3008 1658 202 5 63 chr4 11731000 11731410 -190596937 - MLT1B LTR MaLR -4 386 1 335 253 12 12 chr4 11731834 11731996 -190596351 + GA-rich Low_complexity Low_complexity 2 163 0 6702 75 5 2 chr4 11732087 11733761 -190594586 + L1PA7 LINE L1 4480 6150 -4 191 267 58 35 chr4 11733891 11733977 -190594370 - MIR3 SINE MIR -38 170 83 310 287 11 0 chr4 11735149 11735236 -190593111 - MIR SINE MIR -63 145 58 275 304 55 118 chr4 11735654 11736052 -190592295 + L2 LINE L2 2892 3264 -8 * 441 198 23 0 chr4 11736048 11736134 -190592213 + MIR SINE MIR 56 143 -119 3492 156 40 39 chr4 11736509 11737235 -190591112 + LTR8A LTR ERV1 1 727 0 240 313 50 0 chr4 11737296 11737395 -190590952 + MIR3 SINE MIR 98 201 -7 275 319 107 6 chr4 11738240 11738409 -190589938 - MIR SINE MIR -11 251 66 2166 137 82 20 chr4 11738895 11739298 -190589049 + MSTA LTR MaLR 1 428 0 225 262 131 0 chr4 11739298 11739382 -190588965 + MER63 DNA MER1_type 11 731 -331 641 297 6 28 chr4 11739947 11740129 -190588218 - MIR SINE MIR -37 225 48 474 272 37 31 chr4 11740219 11740381 -190587966 + MIR3 SINE MIR 19 181 -27 372 372 64 6 chr4 11740579 11740822 -190587525 - MIR SINE MIR -4 258 7 689 190 72 9 chr4 11741138 11741378 -190586969 + MLT1B LTR MaLR 83 380 -10 213 267 0 70 chr4 11741648 11741734 -190586613 - MIR SINE MIR -88 174 95 352 359 96 23 chr4 11742246 11742466 -190585881 + MIR SINE MIR 20 255 -7 1757 114 27 71 chr4 11742795 11743131 -190585216 - AluSg SINE Alu 0 323 1 188 362 53 20 chr4 11743984 11744136 -190584211 + MIR SINE MIR 79 235 -27 515 362 63 23 chr4 11744155 11744586 -190583761 + L3 LINE CR1 936 1383 -194 2628 286 86 55 chr4 11744884 11745994 -190582353 + L2 LINE L2 1570 2739 -574 2049 131 0 16 chr4 11745994 11746306 -190582041 + AluSx SINE Alu 1 307 -5 2628 286 86 55 chr4 11746306 11746854 -190581493 + L2 LINE L2 2739 3268 -45 741 275 94 26 chr4 11746884 11747193 -190581154 - LTR33 LTR ERVL -178 343 14 747 260 29 25 chr4 11748086 11748290 -190580057 + MIR SINE MIR 53 257 -5 1208 219 88 78 chr4 11748490 11748592 -190579755 + MLT1D LTR MaLR 3 102 -403 2708 94 3 0 chr4 11748592 11748955 -190579392 + THE1B LTR MaLR 1 364 0 1208 219 88 78 chr4 11748955 11749350 -190578997 + MLT1D LTR MaLR 102 505 0 329 191 0 109 chr4 11749605 11749715 -190578632 - MER53 DNA DNA -68 121 24 273 192 0 0 chr4 11749672 11749724 -190578623 + MER53 DNA DNA 134 185 -4 * 512 315 12 6 chr4 11749777 11749939 -190578408 + MER5B DNA MER1_type 1 163 -15 433 328 44 28 chr4 11749948 11750128 -190578219 - MER5A DNA MER1_type 0 189 7 223 316 13 13 chr4 11751333 11751412 -190576935 + MIR SINE MIR 15 93 -169 205 200 233 42 chr4 11752169 11752289 -190576058 + MIR SINE MIR 117 259 -3 216 407 15 0 chr4 11752666 11752801 -190575546 - L2 LINE L2 -17 3296 3160 2218 112 0 3 chr4 11753123 11753418 -190574929 + AluSc SINE Alu 1 294 -15 281 286 67 57 chr4 11753656 11753761 -190574586 - L2 LINE L2 -309 2963 2858 223 267 93 12 chr4 11753881 11753967 -190574380 + MIR SINE MIR 116 208 -54 1752 307 103 68 chr4 11754650 11755304 -190573043 - L2 LINE L2 -4 3309 2679 1891 195 13 23 chr4 11755304 11755694 -190572653 - MLT1B LTR MaLR -4 386 1 1752 307 103 68 chr4 11755694 11756152 -190572195 - L2 LINE L2 -634 2679 2238 1456 134 31 0 chr4 11756152 11756375 -190571972 - MER30 DNA MER1_type 0 230 1 1752 307 103 68 chr4 11756375 11756993 -190571354 - L2 LINE L2 -1075 2238 1513 494 136 0 12 chr4 11757162 11757243 -190571104 - AluSg/x SINE Alu -17 295 216 27 73 0 0 chr4 11758432 11758487 -190569860 + AT_rich Low_complexity Low_complexity 1 55 0 804 276 14 9 chr4 11758569 11758790 -190569557 + MER58A DNA MER1_type 2 223 -1 643 304 118 32 chr4 11758841 11759196 -190569151 - MLT1L LTR MaLR -4 611 195 1981 136 14 3 chr4 11759196 11759491 -190568856 - AluSx SINE Alu -14 298 1 643 304 118 32 chr4 11759491 11759661 -190568686 - MLT1L LTR MaLR -420 195 41 522 234 9 9 chr4 11759741 11759848 -190568499 + L2 LINE L2 3189 3295 -18 293 314 58 49 chr4 11760412 11760638 -190567709 - L2 LINE L2 -194 3078 2851 210 197 45 45 chr4 11761258 11761324 -190567023 + MIR3 SINE MIR 111 176 -32 226 313 0 0 chr4 11762886 11762950 -190565397 - MIR SINE MIR -133 129 66 348 257 48 119 chr4 11763449 11763573 -190564774 + MIR SINE MIR 20 125 -137 186 71 0 0 chr4 11763573 11763601 -190564746 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 348 257 48 119 chr4 11763601 11763686 -190564661 + MIR SINE MIR 125 214 -48 212 313 9 8 chr4 11763834 11763976 -190564371 + MIR3 SINE MIR 91 207 -1 2493 81 0 0 chr4 11764486 11764796 -190563551 + AluY SINE Alu 1 310 -1 361 299 160 18 chr4 11765037 11765318 -190563029 - MLT1J1 LTR MaLR -106 340 20 400 228 53 70 chr4 11765768 11765882 -190562465 + L2 LINE L2 3202 3313 0 1231 199 126 0 chr4 11765993 11766137 -190562210 - AluSx SINE Alu -6 296 172 207 0 0 0 chr4 11766137 11766160 -190562187 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1231 199 126 0 chr4 11766160 11766276 -190562071 - AluSx SINE Alu -130 172 3 513 102 19 74 chr4 11766340 11766448 -190561899 + AluSg/x SINE Alu 208 309 0 221 167 19 37 chr4 11766454 11766483 -190561864 + GA-rich Low_complexity Low_complexity 1 30 -23 1934 147 0 20 chr4 11766483 11766776 -190561571 + AluSx SINE Alu 26 312 0 221 167 19 37 chr4 11766776 11766800 -190561547 + GA-rich Low_complexity Low_complexity 30 53 0 225 269 0 0 chr4 11767512 11767590 -190560757 + (TATG)n Simple_repeat Simple_repeat 1 78 0 198 327 0 0 chr4 11767972 11768024 -190560323 + MIR SINE MIR 93 144 -64 348 282 73 0 chr4 11768741 11768851 -190559496 - L2 LINE L2 -12 3301 3184 689 332 42 49 chr4 11769069 11769494 -190558853 + L2 LINE L2 2861 3282 -31 699 282 13 15 chr4 11769524 11769921 -190558426 + L1M4 LINE L1 2918 3313 -2833 1743 147 47 32 chr4 11769934 11770274 -190558073 + MER21B LTR ERV1 508 852 -11 335 331 45 19 chr4 11770440 11770594 -190557753 + MIR3 SINE MIR 3 160 -48 324 240 78 36 chr4 11770676 11770868 -190557479 - MER113 DNA MER1_type? -321 200 1 241 339 95 42 chr4 11770933 11771101 -190557246 - L2 LINE L2 0 3272 3096 206 288 34 51 chr4 11771125 11771243 -190557104 + L2 LINE L2 2626 2741 -573 771 209 40 60 chr4 11771248 11771449 -190556898 + MER58A DNA MER1_type 7 203 -21 249 108 0 0 chr4 11772701 11772738 -190555609 + (TG)n Simple_repeat Simple_repeat 2 38 0 246 297 0 0 chr4 11773834 11773898 -190554449 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 1295 255 40 64 chr4 11774388 11774917 -190553430 + LTR40a LTR ERVL 1 516 -3 311 315 97 37 chr4 11775106 11775322 -190553025 + MIR SINE MIR 10 238 -24 254 215 254 31 chr4 11775485 11775615 -190552732 + MLT1L LTR MaLR 54 212 -403 198 0 0 0 chr4 11775699 11775721 -190552626 + (A)n Simple_repeat Simple_repeat 1 22 0 1283 235 29 63 chr4 11775726 11776100 -190552247 + MLT1C LTR MaLR 39 397 -70 225 0 0 0 chr4 11776100 11776125 -190552222 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1283 235 29 63 chr4 11776125 11776192 -190552155 + MLT1C LTR MaLR 397 465 -2 252 97 0 97 chr4 11776486 11776548 -190551799 - LTR66 LTR ERVL -171 439 384 202 150 0 25 chr4 11776553 11776593 -190551754 + (TA)n Simple_repeat Simple_repeat 1 39 0 425 258 0 0 chr4 11777415 11777512 -190550835 - MER81 DNA DNA -13 101 5 192 290 0 93 chr4 11777718 11777825 -190550522 + MIR SINE MIR 96 192 -70 316 146 0 0 chr4 11779466 11779521 -190548826 + MADE1 DNA Mariner 1 55 -25 290 352 142 37 chr4 11779561 11779885 -190548462 - L2 LINE L2 -421 2893 2536 318 206 0 27 chr4 11780000 11780073 -190548274 - MER116 DNA Mariner -2 78 8 210 179 0 0 chr4 11780314 11780370 -190547977 + A-rich Low_complexity Low_complexity 1 56 0 701 181 44 54 chr4 11781141 11781294 -190547053 + L1MA8 LINE L1 6090 6242 -49 2192 100 3 55 chr4 11781294 11781623 -190546724 + AluSq SINE Alu 2 313 0 701 181 44 54 chr4 11781623 11781673 -190546674 + L1MA8 LINE L1 6242 6291 0 449 34 17 0 chr4 11781880 11781939 -190546408 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 306 0 0 0 chr4 11783198 11783232 -190545115 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 182 331 88 11 chr4 11783481 11783662 -190544685 - L2 LINE L2 -374 2940 2746 249 83 0 0 chr4 11784192 11784228 -190544119 + (TG)n Simple_repeat Simple_repeat 2 37 0 234 390 8 0 chr4 11784325 11784443 -190543904 - L2 LINE L2 -671 2643 2525 367 369 8 8 chr4 11785228 11785350 -190542997 + MIR3 SINE MIR 63 184 -24 1916 286 78 19 chr4 11786100 11786927 -190541420 - L2 LINE L2 -239 3074 2201 2491 180 31 72 chr4 11786933 11787645 -190540702 + L1MA9 LINE L1 5592 6274 -38 439 260 165 57 chr4 11787663 11788221 -190540126 - L2 LINE L2 -1106 2208 1591 2105 116 45 0 chr4 11789036 11789328 -190539019 - AluSg SINE Alu -5 305 1 209 316 34 77 chr4 11789365 11789574 -190538773 + L2 LINE L2 2855 3054 -218 542 310 51 35 chr4 11789590 11789845 -190538502 - MIR SINE MIR -3 259 1 212 306 42 0 chr4 11790290 11790362 -190537985 - MIR SINE MIR -170 92 18 21 0 0 0 chr4 11791451 11791472 -190536875 + AT_rich Low_complexity Low_complexity 1 21 0 2257 113 3 3 chr4 11791490 11791800 -190536547 - AluSg SINE Alu 0 310 1 306 235 82 12 chr4 11791847 11791932 -190536415 + MIR SINE MIR 73 163 -99 595 282 63 35 chr4 11791999 11792318 -190536029 + LTR16C LTR ERVL 91 418 -73 938 240 21 34 chr4 11792425 11792780 -190535567 - MLT2C1 LTR ERVL -11 652 44 39170 51 3 5 chr4 11792784 11797963 -190530384 + L1PA4 LINE L1 3 5174 -972 4398 41 2 6 chr4 11797963 11798501 -190529846 + L1PA4 LINE L1 5615 6152 -3 206 239 14 0 chr4 11798591 11798662 -190529685 + (TTATA)n Simple_repeat Simple_repeat 4 75 0 791 218 5 21 chr4 11799025 11799213 -190529134 + MER105 DNA DNA 19 203 -1 284 320 81 20 chr4 11799340 11799537 -190528810 + L1ME1 LINE L1 5955 6163 -3 2337 194 14 0 chr4 11800273 11800716 -190527631 + MER70A LTR ERVL 23 471 -1 4559 80 8 6 chr4 11803037 11803671 -190524676 + L1PA10 LINE L1 5534 6168 0 932 181 104 40 chr4 11803926 11803969 -190524378 - MER33 DNA MER1_type -2267 318 279 2019 99 0 66 chr4 11803969 11804295 -190524052 - AluSc SINE Alu 0 306 1 932 181 104 40 chr4 11804295 11804548 -190523799 - MER33 DNA MER1_type -2306 279 1 201 74 0 0 chr4 11804939 11804966 -190523381 + (CA)n Simple_repeat Simple_repeat 2 28 0 261 179 47 38 chr4 11805543 11805649 -190522698 + (TAA)n Simple_repeat Simple_repeat 1 107 0 358 281 160 35 chr4 11805661 11805892 -190522455 - MIR SINE MIR -1 261 2 243 181 278 0 chr4 11806120 11806192 -190522155 + L1MA9 LINE L1 5702 5793 -519 220 189 38 0 chr4 11806192 11806245 -190522102 + (TA)n Simple_repeat Simple_repeat 1 55 0 2013 196 25 6 chr4 11806249 11806733 -190521614 + L1MA9 LINE L1 5799 6291 -21 652 315 119 43 chr4 11807526 11807753 -190520594 + L2 LINE L2 2458 2666 -647 1941 132 48 40 chr4 11807753 11808124 -190520223 + THE1C LTR MaLR 2 375 0 652 315 119 43 chr4 11808124 11808166 -190520181 + L2 LINE L2 2666 2703 -610 2100 156 117 5 chr4 11808166 11808551 -190519796 + MSTA LTR MaLR 1 428 0 652 315 119 43 chr4 11808551 11809068 -190519279 + L2 LINE L2 2703 3307 -6 227 224 250 0 chr4 11810090 11810166 -190518181 - L2 LINE L2 -17 3296 3202 239 279 62 54 chr4 11810231 11810360 -190517987 - MIR SINE MIR -80 182 53 896 20 0 82 chr4 11810411 11810607 -190517740 + (TA)n Simple_repeat Simple_repeat 1 180 0 398 297 16 0 chr4 11810621 11810749 -190517598 - MLT1G1 LTR MaLR -456 139 10 1209 259 57 12 chr4 11810760 11811181 -190517166 + L1MC4 LINE L1 7425 7864 -178 22 56 0 0 chr4 11811244 11811280 -190517067 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr4 11811431 11811457 -190516890 + AT_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chr4 11811822 11811868 -190516479 + AT_rich Low_complexity Low_complexity 1 46 0 665 213 10 46 chr4 11812275 11812472 -190515875 - MER3 DNA MER1_type -5 204 15 635 148 58 7 chr4 11812475 11812630 -190515717 - L1MA7 LINE L1 0 6291 6129 41526 44 3 1 chr4 11812733 11818872 -190509475 - L1PA3 LINE L1 0 6155 5 1131 52 0 0 chr4 11819014 11819149 -190509198 + AluY SINE Alu 1 135 -176 501 279 54 66 chr4 11819193 11819308 -190509039 + L1ME2 LINE L1 5498 5613 -551 2138 233 12 52 chr4 11819308 11819883 -190508464 + MLT2B3 LTR ERVL 3 554 0 501 279 54 66 chr4 11819883 11820153 -190508194 + L1ME2 LINE L1 5613 5884 -280 23 33 0 0 chr4 11820591 11820621 -190507726 + AT_rich Low_complexity Low_complexity 1 30 0 673 277 22 0 chr4 11820681 11820865 -190507482 + MER5A DNA MER1_type 2 189 0 972 201 18 27 chr4 11821220 11821444 -190506903 + MER92B LTR ERV1 1 222 -414 532 279 32 11 chr4 11821715 11821905 -190506442 + L1MB7 LINE L1 13 206 -6653 3158 159 14 17 chr4 11821954 11822534 -190505813 + L1PB4 LINE L1 5577 6154 -2 4180 239 48 40 chr4 11822566 11823630 -190504717 + L1MB7 LINE L1 4181 5264 -1693 1401 185 6 106 chr4 11823630 11823960 -190504387 - AluJb SINE Alu -4 298 2 4180 239 48 40 chr4 11823960 11824513 -190503834 + L1MB7 LINE L1 5264 5811 -1146 1893 176 0 0 chr4 11824516 11824806 -190503541 - AluJb SINE Alu -22 290 1 2337 97 0 3 chr4 11824829 11825140 -190503207 + AluY SINE Alu 1 310 -1 2626 214 41 49 chr4 11825225 11826139 -190502208 + L1MB7 LINE L1 5976 6875 -120 308 191 225 0 chr4 11826143 11826232 -190502115 - Tigger5 DNA MER2_type 0 2323 2215 286 200 0 0 chr4 11826224 11826279 -190502068 - Tigger5 DNA MER2_type -2268 55 1 * 410 246 0 0 chr4 11826280 11826390 -190501957 + L1MB8 LINE L1 6065 6174 -4 339 228 40 20 chr4 11826907 11827008 -190501339 + Charlie8 DNA MER1_type 75 177 -2240 1135 280 105 42 chr4 11827656 11828532 -190499815 + L2 LINE L2 2170 3164 -149 297 282 8 8 chr4 11828532 11828656 -190499691 + (TA)n Simple_repeat Simple_repeat 2 125 0 299 250 42 89 chr4 11828662 11828830 -190499517 + L2 LINE L2 3115 3274 -39 229 318 9 19 chr4 11828830 11828937 -190499410 - MLT1J LTR MaLR -301 210 105 300 83 0 0 chr4 11829338 11829386 -190498961 + (CA)n Simple_repeat Simple_repeat 1 48 0 267 275 0 38 chr4 11829673 11829753 -190498594 + L2 LINE L2 3194 3270 -2 233 417 37 0 chr4 11829810 11829973 -190498374 - MIR SINE MIR -93 169 1 216 327 18 44 chr4 11830348 11830461 -190497886 - MIR SINE MIR -145 117 8 422 285 161 15 chr4 11830840 11831059 -190497288 - MIR SINE MIR -7 255 5 408 298 78 41 chr4 11831070 11831312 -190497035 - MIR SINE MIR -6 256 6 450 318 73 30 chr4 11832702 11832935 -190495412 + MIR SINE MIR 8 250 -12 189 0 0 0 chr4 11833008 11833029 -190495318 + (ATG)n Simple_repeat Simple_repeat 3 23 0 255 143 41 0 chr4 11833400 11833449 -190494898 - MER94 DNA DNA -79 55 5 336 284 45 32 chr4 11834226 11834381 -190493966 + L1MB8 LINE L1 5785 5941 -237 22 0 0 0 chr4 11834512 11834534 -190493813 + AT_rich Low_complexity Low_complexity 1 22 0 2840 7 0 0 chr4 11835027 11835334 -190493013 + AluYb8 SINE Alu 1 307 -11 1510 122 36 0 chr4 11835461 11835683 -190492664 - MER30 DNA MER1_type 0 230 1 1941 144 0 43 chr4 11836276 11836602 -190491745 - AluSx SINE Alu 0 312 1 635 311 18 18 chr4 11836745 11836973 -190491374 - MIR SINE MIR -5 257 30 417 54 0 0 chr4 11837313 11837369 -190490978 + (TG)n Simple_repeat Simple_repeat 1 56 0 281 269 39 13 chr4 11837460 11837538 -190490809 - MIR SINE MIR -96 166 87 235 371 75 33 chr4 11838212 11838425 -190489922 - MIR SINE MIR -23 239 18 351 78 0 0 chr4 11839014 11839065 -190489282 + (TG)n Simple_repeat Simple_repeat 2 52 0 1323 178 43 11 chr4 11839403 11839679 -190488668 - L1PB4 LINE L1 -1 6155 5871 506 77 26 0 chr4 11840229 11840307 -190488040 + MADE1 DNA Mariner 1 80 0 1119 271 65 36 chr4 11840530 11841050 -190487297 + L1M4 LINE L1 16 550 -5992 1359 248 31 56 chr4 11841050 11841529 -190486818 - MLT1D LTR MaLR -38 467 1 1949 198 30 51 chr4 11841529 11842035 -190486312 + L1MB7 LINE L1 5614 6108 -76 2370 89 0 10 chr4 11842035 11842339 -190486008 + AluSq SINE Alu 3 303 -10 1949 198 30 51 chr4 11842339 11842404 -190485943 + L1MB7 LINE L1 6108 6173 -11 305 308 39 19 chr4 11842646 11842750 -190485597 - MIR SINE MIR -150 112 7 234 156 0 0 chr4 11842810 11842855 -190485492 + (CAA)n Simple_repeat Simple_repeat 1 45 0 2055 120 3 0 chr4 11843479 11843785 -190484562 + AluSx SINE Alu 1 307 0 208 0 0 0 chr4 11843762 11843813 -190484534 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr4 11843813 11843834 -190484513 + AT_rich Low_complexity Low_complexity 1 21 0 448 317 144 5 chr4 11844352 11844560 -190483787 + MIR SINE MIR 25 261 -1 1293 120 6 0 chr4 11844617 11844826 -190483521 - AluSg/x SINE Alu 0 318 109 2373 98 0 0 chr4 11844973 11845280 -190483067 + AluSx SINE Alu 1 307 -5 1261 226 57 57 chr4 11845337 11845842 -190482505 + MLT1D LTR MaLR 1 505 0 2198 122 0 0 chr4 11846014 11846317 -190482030 + AluSg SINE Alu 1 303 -7 227 380 103 5 chr4 11847293 11847477 -190480870 - MIR SINE MIR -16 246 45 383 226 94 66 chr4 11847729 11848017 -190480330 - L1MC5 LINE L1 -55 7906 7611 327 256 202 76 chr4 11848299 11848537 -190479810 - L1MC4 LINE L1 -1041 7001 6734 451 309 95 84 chr4 11848588 11849102 -190479245 - L1MC4a LINE L1 -1213 6595 6076 1980 299 61 17 chr4 11849231 11850015 -190478332 - L2 LINE L2 -1178 2136 1318 218 330 107 0 chr4 11851033 11851145 -190477202 + MIR SINE MIR 82 205 -57 205 271 0 43 chr4 11851241 11851311 -190477036 + A-rich Low_complexity Low_complexity 3 69 0 2144 177 48 62 chr4 11851333 11851942 -190476405 + L1MD3 LINE L1 7396 7995 0 277 329 27 14 chr4 11851938 11852157 -190476190 + L1ME1 LINE L1 5601 5822 -299 * 342 242 137 22 chr4 11852166 11852348 -190475999 + L1ME1 LINE L1 5959 6161 -5 345 347 103 14 chr4 11852680 11852893 -190475454 + MIR SINE MIR 4 235 -27 234 150 0 0 chr4 11852934 11852974 -190475373 + (TTA)n Simple_repeat Simple_repeat 2 41 0 269 308 51 34 chr4 11853365 11853482 -190474865 + MIR3 SINE MIR 15 133 -75 294 29 0 0 chr4 11854147 11854182 -190474165 + (TG)n Simple_repeat Simple_repeat 1 35 0 323 215 97 11 chr4 11854548 11854641 -190473706 + MLT1I LTR MaLR 305 405 -4 527 128 0 0 chr4 11855023 11855101 -190473246 + FRAM SINE Alu 22 99 -77 233 309 91 51 chr4 11855131 11855306 -190473041 - L2 LINE L2 -180 3133 2952 403 301 147 6 chr4 11855538 11855694 -190472653 - MER45A DNA AcHobo 0 178 1 393 300 69 6 chr4 11855915 11856075 -190472272 + MIR SINE MIR 20 189 -73 2708 69 11 0 chr4 11856675 11857023 -190471324 + L1PA7 LINE L1 5799 6150 -4 298 310 122 35 chr4 11857107 11857336 -190471011 - L2 LINE L2 -454 2860 2612 640 269 88 63 chr4 11857410 11857648 -190470699 - MIR SINE MIR -1 261 18 1148 129 5 10 chr4 11857777 11857970 -190470377 - L1PB2 LINE L1 -2 6149 5958 1009 189 4 37 chr4 11858143 11858436 -190469911 - MLT1C LTR MaLR 0 467 120 725 217 12 0 chr4 11858592 11858758 -190469589 - MLT1B LTR MaLR -193 197 30 1930 137 126 8 chr4 11858767 11859139 -190469208 - MSTA LTR MaLR -12 416 1 1642 226 62 24 chr4 11859200 11859369 -190468978 + MLT1D LTR MaLR 23 184 -321 2088 139 10 0 chr4 11859369 11859678 -190468669 + AluSp SINE Alu 1 312 -1 1642 226 62 24 chr4 11859678 11859818 -190468529 + MLT1D LTR MaLR 184 317 -188 1213 104 19 160 chr4 11859818 11859932 -190468415 - MER30 DNA MER1_type 0 230 174 2100 145 6 6 chr4 11859932 11860243 -190468104 - AluSq SINE Alu -2 311 1 1213 104 19 160 chr4 11860243 11860396 -190467951 - MER30 DNA MER1_type -56 174 1 1642 226 62 24 chr4 11860396 11860550 -190467797 + MLT1D LTR MaLR 317 505 0 223 275 113 42 chr4 11861339 11861481 -190466866 + MIR SINE MIR 37 188 -74 258 322 83 8 chr4 11862501 11862622 -190465725 - MIR SINE MIR -76 186 57 287 339 62 5 chr4 11862917 11863109 -190465238 + L2 LINE L2 2467 2669 -645 398 351 27 27 chr4 11863230 11863526 -190464821 + MLT1J LTR MaLR 111 406 -105 1391 252 67 39 chr4 11863868 11864333 -190464014 + MLT2F LTR ERVL 186 663 0 856 214 70 41 chr4 11864353 11864596 -190463751 - MIR SINE MIR 0 262 13 188 421 40 16 chr4 11864727 11864853 -190463494 - L2 LINE L2 -11 3261 3133 492 221 0 10 chr4 11865120 11865224 -190463123 + MER5A DNA MER1_type 4 106 -83 462 316 135 5 chr4 11865251 11865466 -190462881 + MIR SINE MIR 15 257 -5 1398 313 86 48 chr4 11866092 11867296 -190461051 + L2 LINE L2 2042 3303 -10 329 333 8 17 chr4 11867804 11867924 -190460423 + L2 LINE L2 3194 3312 -1 21 0 0 0 chr4 11868293 11868314 -190460033 + AT_rich Low_complexity Low_complexity 1 21 0 2200 137 63 31 chr4 11868493 11868908 -190459439 + MSTA LTR MaLR 1 428 0 191 189 19 0 chr4 11869191 11869244 -190459103 + (TAA)n Simple_repeat Simple_repeat 1 54 0 362 361 68 5 chr4 11869606 11869984 -190458363 - L2 LINE L2 0 3313 2830 335 299 123 0 chr4 11870448 11870602 -190457745 - MIR SINE MIR -17 245 73 188 254 127 0 chr4 11871274 11871329 -190457018 - MIR3 SINE MIR -29 179 118 435 352 101 18 chr4 11871410 11871629 -190456718 + MIR SINE MIR 20 256 -6 1378 204 20 56 chr4 11871766 11872159 -190456188 - MLT1C LTR MaLR -8 459 81 2055 140 0 16 chr4 11872164 11872479 -190455868 - AluSg SINE Alu 0 310 1 365 187 28 49 chr4 11872503 11872531 -190455816 - MLT1C LTR MaLR -266 124 97 2026 33 4 0 chr4 11872531 11872776 -190455571 - L1PA5 LINE L1 0 6154 5909 365 187 28 49 chr4 11872776 11872868 -190455479 - MLT1C LTR MaLR -293 97 6 253 308 29 29 chr4 11872873 11872977 -190455370 + L2 LINE L2 3168 3271 -1 1607 176 36 6 chr4 11873982 11874312 -190454035 - MLT1B LTR MaLR -44 346 7 335 313 72 56 chr4 11874313 11874562 -190453785 + L2 LINE L2 3009 3261 -52 247 362 91 26 chr4 11874557 11874985 -190453362 + L2 LINE L2 1963 2418 -896 * 14070 37 2 0 chr4 11875185 11877666 -190450681 + L1PA5 LINE L1 3664 6148 -6 327 78 0 0 chr4 11877692 11877743 -190450604 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 838 245 13 8 chr4 11878013 11878318 -190450029 + LTR16A LTR ERVL 89 437 -13 229 360 30 0 chr4 11878330 11878430 -190449917 + L2 LINE L2 2928 3030 -242 1912 232 17 17 chr4 11878585 11879063 -190449284 - MLT1E2 LTR MaLR -1 625 148 210 313 70 17 chr4 11880692 11880807 -190447540 - L2 LINE L2 -1 3271 3151 790 193 29 63 chr4 11880905 11881112 -190447235 - MER3 DNA MER1_type -8 201 2 268 335 30 36 chr4 11881132 11881299 -190447048 - L2 LINE L2 -225 3047 2882 233 276 78 43 chr4 11881648 11881764 -190446583 - L2 LINE L2 -557 2757 2638 352 268 20 85 chr4 11882683 11882814 -190445533 + MIR SINE MIR 86 206 -56 763 274 54 12 chr4 11882814 11883055 -190445292 + MIR SINE MIR 2 252 -10 1756 109 0 60 chr4 11883245 11883510 -190444837 - AluSq SINE Alu -64 249 1 244 281 92 37 chr4 11883716 11884044 -190444303 + HAL1 LINE L1 1001 1346 -1161 2021 234 31 70 chr4 11884047 11884779 -190443568 + L1ME1 LINE L1 5429 6132 -34 2063 152 0 0 chr4 11884896 11885199 -190443148 + AluSx SINE Alu 1 303 -9 405 228 175 23 chr4 11885214 11885461 -190442886 + HAL1b LINE L1 376 1744 -763 1856 152 10 3 chr4 11885657 11885785 -190442562 + AluSx SINE Alu 1 127 -185 369 0 0 0 chr4 11885785 11885826 -190442521 + (CA)n Simple_repeat Simple_repeat 2 42 0 1856 152 10 3 chr4 11885826 11886007 -190442340 + AluSx SINE Alu 127 312 0 2888 195 29 7 chr4 11886848 11887443 -190440904 - MER73 LTR ERVL -2 642 35 242 325 39 0 chr4 11887660 11887737 -190440610 - L2 LINE L2 -2 3311 3232 461 316 75 0 chr4 11888819 11889006 -190439341 - MIR SINE MIR -36 226 26 410 308 68 12 chr4 11889142 11889332 -190439015 + MIR SINE MIR 36 235 -27 26 0 0 0 chr4 11889931 11889957 -190438390 + AT_rich Low_complexity Low_complexity 1 26 0 693 262 97 17 chr4 11890008 11890245 -190438102 + MIR SINE MIR 7 262 0 254 281 55 31 chr4 11890476 11890604 -190437743 - MLT1K LTR MaLR -290 298 168 1216 249 140 25 chr4 11890608 11891014 -190437333 + MLT1D LTR MaLR 1 453 -52 22 0 0 0 chr4 11891222 11891244 -190437103 + AT_rich Low_complexity Low_complexity 1 22 0 186 237 136 51 chr4 11892967 11893085 -190435262 - MIR SINE MIR -26 236 109 622 252 35 70 chr4 11894159 11894417 -190433930 - MER112 DNA MER1_type -8 252 4 198 333 156 0 chr4 11895088 11895184 -190433163 + MIR SINE MIR 9 119 -143 415 274 61 33 chr4 11895470 11895682 -190432665 + LTR16B LTR ERVL 247 464 0 2865 299 52 8 chr4 11895686 11896583 -190431764 + L2 LINE L2 2112 3074 -239 2074 140 21 56 chr4 11896583 11896961 -190431386 + MLT1A1 LTR MaLR 1 365 0 2865 299 52 8 chr4 11896961 11897213 -190431134 + L2 LINE L2 3074 3313 0 267 274 98 20 chr4 11897213 11897315 -190431032 + MIR SINE MIR 138 247 -15 342 336 13 97 chr4 11897742 11898058 -190430289 - L2 LINE L2 -9 3304 3019 225 224 0 0 chr4 11898261 11898319 -190430028 + (TA)n Simple_repeat Simple_repeat 2 59 0 196 0 118 0 chr4 11898385 11898419 -190429928 + A-rich Low_complexity Low_complexity 3 40 0 5682 112 5 5 chr4 11898429 11899794 -190428553 - L1PA14 LINE L1 -12 6149 4775 950 249 102 35 chr4 11900450 11900792 -190427555 - MLT1A1 LTR MaLR 0 365 1 25 65 0 0 chr4 11900793 11900839 -190427508 + AT_rich Low_complexity Low_complexity 1 46 0 441 281 25 55 chr4 11902016 11902367 -190425980 - MLT1I LTR MaLR -8 401 80 309 356 84 10 chr4 11902510 11902712 -190425635 + MIR SINE MIR 21 237 -25 24 32 0 0 chr4 11902788 11902819 -190425528 + AT_rich Low_complexity Low_complexity 1 31 0 227 301 73 32 chr4 11903085 11903208 -190425139 - MIR SINE MIR -12 250 123 1510 281 77 17 chr4 11903529 11904287 -190424060 + L1MC4 LINE L1 7098 7900 -142 265 234 0 13 chr4 11904384 11904461 -190423886 + L1MC4 LINE L1 7914 7989 -53 256 325 145 20 chr4 11904526 11904726 -190423621 - MIR SINE MIR -2 260 36 1969 107 4 0 chr4 11904899 11905161 -190423186 - AluSx SINE Alu -8 304 42 209 329 175 15 chr4 11905238 11905375 -190422972 - L2 LINE L2 -86 3186 3028 186 43 0 0 chr4 11905532 11905555 -190422792 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 195 129 0 0 chr4 11906336 11906367 -190421980 + (A)n Simple_repeat Simple_repeat 1 31 0 306 245 0 43 chr4 11906587 11906681 -190421666 - L1MC4 LINE L1 -1300 6742 6653 193 270 0 90 chr4 11907211 11907300 -190421047 - MIR SINE MIR -71 137 57 209 287 55 67 chr4 11907500 11907664 -190420683 + MIR3 SINE MIR 32 193 -15 582 109 0 0 chr4 11907938 11908030 -190420317 + (TA)n Simple_repeat Simple_repeat 1 92 0 306 0 0 0 chr4 11908029 11908063 -190420284 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 1966 122 49 7 chr4 11908573 11908861 -190419486 - AluSx SINE Alu -12 300 1 317 179 0 0 chr4 11909299 11909355 -190418992 + L1MC4 LINE L1 6648 6703 -1339 249 217 0 43 chr4 11909370 11909462 -190418885 + L1MC4 LINE L1 6615 6702 -1340 237 108 0 0 chr4 11909521 11909558 -190418789 + (TA)n Simple_repeat Simple_repeat 1 37 0 525 291 71 11 chr4 11909703 11909885 -190418462 + MIR SINE MIR 64 256 -6 888 216 15 29 chr4 11910029 11910233 -190418114 + MER20 DNA MER1_type 1 201 -18 214 256 0 0 chr4 11910592 11910635 -190417712 - L2 LINE L2 -9 3304 3262 1068 193 118 24 chr4 11910641 11910812 -190417535 - MLT1A1 LTR MaLR 0 365 211 315 0 0 0 chr4 11910812 11910847 -190417500 + (GA)n Simple_repeat Simple_repeat 1 35 0 1068 193 118 24 chr4 11910847 11911006 -190417341 - MLT1A1 LTR MaLR -154 211 4 242 230 46 23 chr4 11911010 11911097 -190417250 - L2 LINE L2 -66 3247 3159 195 338 127 25 chr4 11911126 11911283 -190417064 - L2 LINE L2 -254 3059 2887 465 199 112 19 chr4 11912746 11912907 -190415440 - MER53 DNA DNA -13 176 1 34 24 0 0 chr4 11913359 11913400 -190414947 + AT_rich Low_complexity Low_complexity 1 41 0 6344 140 28 4 chr4 11913400 11915554 -190412793 - L1MA3 LINE L1 0 7724 5514 * 9424 138 41 8 chr4 11915553 11917184 -190411163 - L1MA3 LINE L1 -4776 2789 1105 580 143 59 17 chr4 11917180 11917299 -190411048 - L1MA3 LINE L1 -7430 135 12 * 380 171 0 13 chr4 11917877 11917953 -190410394 + MLT1A1 LTR MaLR 289 363 -2 1851 176 17 66 chr4 11918385 11918795 -190409552 + MLT1B LTR MaLR 1 390 0 312 210 76 105 chr4 11919325 11919593 -190408754 - L1MC4 LINE L1 -834 7002 6688 2446 55 0 16 chr4 11920227 11920539 -190407808 - AluY SINE Alu -4 307 1 1498 202 33 7 chr4 11921474 11921957 -190406390 - AluJb SINE Alu 0 491 1 1413 206 30 43 chr4 11921976 11922156 -190406191 - AluJo SINE Alu -13 299 123 189 0 0 0 chr4 11922156 11922177 -190406170 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1413 206 30 43 chr4 11922177 11922297 -190406050 - AluJo SINE Alu -189 123 3 1865 240 67 65 chr4 11922302 11922816 -190405531 - L1ME1 LINE L1 -51 6115 5596 4045 123 11 51 chr4 11922816 11922837 -190405510 + L1PA13 LINE L1 5470 5490 -673 1644 110 125 26 chr4 11922837 11923101 -190405246 + AluSg1 SINE Alu 5 294 -15 4045 123 11 51 chr4 11923101 11923802 -190404545 + L1PA13 LINE L1 5490 6163 0 1865 240 67 65 chr4 11923802 11924118 -190404229 - L1ME1 LINE L1 -570 5596 5282 2092 106 0 0 chr4 11924154 11924429 -190403918 - AluSc SINE Alu -30 279 5 456 271 159 0 chr4 11924553 11924704 -190403643 - MER5A DNA MER1_type -6 183 9 552 230 25 25 chr4 11925293 11925454 -190402893 + Charlie7 DNA MER1_type 25 185 -2427 458 291 167 40 chr4 11925467 11925921 -190402426 - L2 LINE L2 -952 2362 1851 339 296 58 51 chr4 11926042 11926299 -190402048 - L1ME4a LINE L1 -44 6077 5819 320 237 15 44 chr4 11926336 11926471 -190401876 - L1ME4a LINE L1 -374 5747 5617 308 250 33 11 chr4 11926728 11926820 -190401527 + GA-rich Low_complexity Low_complexity 1 94 0 1996 134 42 22 chr4 11926842 11927199 -190401148 + THE1B LTR MaLR 1 364 0 206 162 27 0 chr4 11927872 11927909 -190400438 + GA-rich Low_complexity Low_complexity 4 41 0 2484 69 3 0 chr4 11928373 11928679 -190399668 + AluSg SINE Alu 1 307 -3 285 380 33 7 chr4 11929763 11929913 -190398434 + MIR3 SINE MIR 49 202 -6 2368 90 6 0 chr4 11930834 11931145 -190397202 + AluSp SINE Alu 1 313 0 192 77 0 0 chr4 11931158 11931184 -190397163 + (CTA)n Simple_repeat Simple_repeat 2 27 0 646 19 102 0 chr4 11931286 11931492 -190396855 + (TA)n Simple_repeat Simple_repeat 1 226 0 1955 256 55 12 chr4 11931541 11932100 -190396247 - MLT1E LTR MaLR -4 589 7 1125 301 101 26 chr4 11932395 11933002 -190395345 + L3 LINE CR1 807 1458 -119 186 303 124 0 chr4 11933009 11933098 -190395249 - L2 LINE L2 0 3272 3173 274 285 213 28 chr4 11933143 11933396 -190394951 - MLT1I LTR MaLR -17 392 93 183 80 0 0 chr4 11934366 11934391 -190393956 + (TTG)n Simple_repeat Simple_repeat 3 27 0 437 265 30 15 chr4 11934755 11934887 -190393460 - MIR SINE MIR -16 246 113 1089 277 45 70 chr4 11934892 11935354 -190392993 + L1ME3A LINE L1 5258 5695 -475 1928 216 29 79 chr4 11935354 11935937 -190392410 - MLT2B3 LTR ERVL 0 554 1 1089 277 45 70 chr4 11935937 11936232 -190392115 + L1ME3A LINE L1 5695 5996 -174 923 269 43 41 chr4 11936849 11937002 -190391345 + HsTC2 DNA Tc2 2 153 -1745 1730 233 78 50 chr4 11937002 11937105 -190391242 + MLT1E LTR MaLR 3 102 -491 2243 107 17 0 chr4 11937105 11937403 -190390944 - AluSx SINE Alu -9 303 1 1730 233 78 50 chr4 11937403 11937874 -190390473 + MLT1E LTR MaLR 102 593 0 923 269 43 41 chr4 11937874 11938134 -190390213 + HsTC2 DNA Tc2 153 419 -1479 1634 198 7 70 chr4 11938134 11938548 -190389799 - MLT1B LTR MaLR 0 390 3 923 269 43 41 chr4 11938548 11938576 -190389771 + HsTC2 DNA Tc2 419 445 -1453 435 171 0 13 chr4 11938550 11938626 -190389721 - MLT1D LTR MaLR -426 79 5 * 1934 59 0 0 chr4 11938643 11938879 -190389468 + L1PA5 LINE L1 5912 6147 -7 29 60 0 0 chr4 11939387 11939437 -190388910 + AT_rich Low_complexity Low_complexity 1 50 0 1500 185 59 19 chr4 11939606 11939930 -190388417 + MER1B DNA MER1_type 1 337 0 368 264 192 0 chr4 11940113 11940238 -190388109 - MIR SINE MIR -94 168 20 191 292 62 31 chr4 11940985 11941050 -190387297 + L2 LINE L2 3160 3226 -46 2825 81 16 14 chr4 11941852 11942246 -190386101 + L1PA10 LINE L1 5770 6163 -5 193 313 17 35 chr4 11942724 11942839 -190385508 + L2 LINE L2 3155 3267 -5 742 226 53 5 chr4 11943271 11943461 -190384886 - ORSL DNA AcHobo 0 275 77 454 259 46 38 chr4 11944587 11944718 -190383629 + MIR SINE MIR 11 142 -120 191 311 58 29 chr4 11944967 11945070 -190383277 + L2 LINE L2 3193 3298 -15 270 0 0 0 chr4 11946876 11946906 -190381441 + (A)n Simple_repeat Simple_repeat 1 30 0 216 200 0 0 chr4 11947566 11947621 -190380726 + CT-rich Low_complexity Low_complexity 2 56 0 187 286 24 24 chr4 11950700 11950784 -190377563 + MIR SINE MIR 69 152 -110 24 0 0 0 chr4 11951162 11951186 -190377161 + AT_rich Low_complexity Low_complexity 1 24 0 220 256 47 47 chr4 11951321 11951407 -190376940 + L2 LINE L2 3187 3272 0 188 356 40 0 chr4 11951421 11951522 -190376825 - MIR SINE MIR -77 185 81 250 304 11 11 chr4 11951955 11952047 -190376300 + LTR67 LTR ERVL 428 519 -38 578 271 82 79 chr4 11952331 11952671 -190375676 - MER102b DNA MER1_type 0 341 1 494 275 40 40 chr4 11952855 11953055 -190375292 - L2 LINE L2 -1 3312 3113 241 304 89 45 chr4 11953285 11953397 -190374950 - L2 LINE L2 -17 3255 3139 957 88 15 0 chr4 11953500 11953637 -190374710 - AluSp/q SINE Alu -2 311 173 27 73 0 0 chr4 11953767 11953822 -190374525 + AT_rich Low_complexity Low_complexity 1 55 0 261 196 144 62 chr4 11954133 11954230 -190374117 + L2 LINE L2 3162 3266 -47 202 293 40 30 chr4 11954609 11954708 -190373639 - MIR SINE MIR -107 155 56 727 194 94 0 chr4 11955440 11955610 -190372737 + MER53 DNA DNA 4 189 0 209 362 41 15 chr4 11956508 11956704 -190371643 + MIR SINE MIR 37 237 -25 1881 94 11 0 chr4 11956894 11957160 -190371187 - L1PA8 LINE L1 0 6172 5904 278 248 7 60 chr4 11957324 11957473 -190370874 + GA-rich Low_complexity Low_complexity 1 141 0 255 320 65 20 chr4 11958071 11958224 -190370123 + MIR SINE MIR 94 253 -9 289 253 58 23 chr4 11958460 11958547 -190369800 - MLT1L LTR MaLR -325 290 201 192 316 61 26 chr4 11958943 11959057 -190369290 + MIR SINE MIR 6 123 -139 192 341 32 41 chr4 11959120 11959243 -190369104 + L2 LINE L2 3187 3308 -5 324 299 128 48 chr4 11959728 11959979 -190368368 + MLT1I LTR MaLR 40 310 -99 217 358 159 6 chr4 11961111 11961287 -190367060 - MIR SINE MIR -13 249 47 203 304 0 0 chr4 11962206 11962262 -190366085 + (CA)n Simple_repeat Simple_repeat 1 56 0 481 214 89 9 chr4 11962389 11962501 -190365846 + 5S rRNA rRNA 1 121 0 1483 226 19 19 chr4 11963370 11963733 -190364614 - MLT1A1 LTR MaLR 0 365 3 203 306 41 20 chr4 11964277 11964375 -190363972 - MIR3 SINE MIR -104 104 5 523 278 37 49 chr4 11964483 11964728 -190363619 - MIR SINE MIR -1 261 20 25 31 0 0 chr4 11964777 11964809 -190363538 + AT_rich Low_complexity Low_complexity 1 32 0 217 258 72 10 chr4 11965324 11965421 -190362926 + L2 LINE L2 3199 3301 -12 2171 106 0 3 chr4 11965628 11965939 -190362408 - AluSg SINE Alu 0 310 1 396 296 66 18 chr4 11966550 11966776 -190361571 + MER102a DNA MER1_type 94 330 0 1443 223 13 56 chr4 11966841 11967232 -190361115 - MLT1A2 LTR MaLR 0 374 1 198 311 82 16 chr4 11967400 11967522 -190360825 + MIR3 SINE MIR 34 163 -45 235 273 0 81 chr4 11968213 11968312 -190360035 - MIR SINE MIR 0 262 172 295 308 185 8 chr4 11968685 11968815 -190359532 + MER5A DNA MER1_type 36 188 -1 395 316 76 6 chr4 11970051 11970222 -190358125 - MIR SINE MIR -7 255 73 183 307 99 10 chr4 11970302 11970403 -190357944 + MIR SINE MIR 134 243 -19 189 281 37 37 chr4 11970981 11971063 -190357284 - L2 LINE L2 -5 3267 3186 414 182 40 97 chr4 11972098 11972200 -190356147 + Charlie5 DNA MER1_type 2362 2451 -173 1972 154 0 17 chr4 11972200 11972499 -190355848 + AluSx SINE Alu 1 294 -18 414 182 40 97 chr4 11972499 11972572 -190355775 + Charlie5 DNA MER1_type 2451 2527 -97 458 211 41 8 chr4 11972620 11972743 -190355604 - MIR SINE MIR -59 203 77 248 221 73 0 chr4 11973319 11973387 -190354960 - L1MC4 LINE L1 -1330 6712 6640 187 227 30 0 chr4 11973422 11973488 -190354859 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 213 224 0 0 chr4 11973954 11974012 -190354335 + (CA)n Simple_repeat Simple_repeat 1 58 0 2306 92 14 0 chr4 11974906 11975201 -190353146 + AluSp SINE Alu 1 299 -14 307 215 0 0 chr4 11975518 11975583 -190352764 - MLT1H LTR MaLR -17 532 468 * 452 212 166 72 chr4 11975582 11975775 -190352572 - MLT1H LTR MaLR -228 321 111 1105 200 95 46 chr4 11975984 11976309 -190352038 + MER58B DNA MER1_type 1 341 0 318 237 42 17 chr4 11978815 11978933 -190349414 - MIR SINE MIR -58 204 84 2279 117 0 0 chr4 11980774 11981082 -190347265 + AluSg SINE Alu 1 308 -2 22 0 0 0 chr4 11981082 11981104 -190347243 + AT_rich Low_complexity Low_complexity 1 22 0 244 303 173 12 chr4 11981625 11981787 -190346560 - MIR SINE MIR 0 262 75 262 327 73 9 chr4 11982249 11982359 -190345988 + MIR SINE MIR 25 141 -67 807 259 51 121 chr4 11982559 11983046 -190345301 + LTR16A1 LTR ERVL 1 453 -4 209 298 0 35 chr4 11983432 11983489 -190344858 + L2 LINE L2 3206 3260 -12 193 339 113 11 chr4 11983805 11983982 -190344365 - L3 LINE CR1 -111 1466 1272 430 298 29 12 chr4 11983983 11984154 -190344193 + MIR SINE MIR 7 180 -82 571 255 7 21 chr4 11984317 11984458 -190343889 - MIR SINE MIR -63 199 61 1310 251 92 59 chr4 11984630 11985204 -190343143 + MLT1E LTR MaLR 1 593 0 207 329 37 0 chr4 11985449 11985531 -190342816 - MIR3 SINE MIR -23 185 101 678 244 227 31 chr4 11985774 11986126 -190342221 - MLT1G LTR MaLR 0 590 170 2793 157 10 40 chr4 11987370 11987874 -190340473 - Tigger5 DNA MER2_type 0 2323 1835 1146 219 0 5 chr4 11987878 11988088 -190340259 - Tigger5 DNA MER2_type -2112 211 3 327 246 31 0 chr4 11988094 11988159 -190340188 + MER21B LTR ERV1 23 89 -774 3007 6 0 0 chr4 11988240 11988557 -190339790 - AluYb8 SINE Alu -1 317 1 1134 237 26 82 chr4 11988558 11988900 -190339447 + MER21B LTR ERV1 105 427 -436 * 1577 171 8 8 chr4 11988877 11989141 -190339206 - MSTD LTR MaLR -132 264 1 5976 234 71 75 chr4 11989141 11990882 -190337465 - MSTD-int LTR MaLR 0 1735 2 2034 199 65 0 chr4 11990884 11991256 -190337091 - MSTD LTR MaLR 0 396 1 1199 250 30 31 chr4 11991260 11991624 -190336723 + MER21B LTR ERV1 466 803 -4 43360 36 21 1 chr4 11991779 11997809 -190330538 + L1PA2 LINE L1 3 6155 0 1851 218 35 11 chr4 11998180 11998634 -190329713 + L1MB4 LINE L1 5710 6174 -6 279 133 0 0 chr4 11999453 11999498 -190328849 + (TA)n Simple_repeat Simple_repeat 1 45 0 1133 197 54 47 chr4 11999618 12000079 -190328268 - LTR55 LTR ERV -5 543 2 908 223 43 15 chr4 12000169 12000609 -190327738 - MLT1D LTR MaLR 0 505 3 181 265 0 0 chr4 12000978 12001012 -190327335 - L2 LINE L2 -85 3187 3154 1543 143 87 113 chr4 12001013 12001473 -190326874 - LTR7 LTR ERV1 -2 448 1 4113 174 34 4 chr4 12001516 12002228 -190326119 - ERVL LTR ERVL -1834 3930 3198 209 359 71 12 chr4 12002441 12002611 -190325736 + MIR SINE MIR 83 262 0 192 323 161 19 chr4 12002594 12002749 -190325598 + L2 LINE L2 2977 3153 -160 * 231 277 8 59 chr4 12004221 12004340 -190324007 + (CTGGGG)n Simple_repeat Simple_repeat 3 115 0 418 258 137 0 chr4 12004995 12005119 -190323228 + MIR SINE MIR 29 169 -93 945 199 184 14 chr4 12005282 12005559 -190322788 - MER33 DNA MER1_type 0 324 1 7067 16 9 0 chr4 12005660 12006455 -190321892 - L1PA2 LINE L1 -1 6154 5353 3806 22 0 7 chr4 12006456 12006913 -190321434 + L1PA2 LINE L1 4893 5346 -800 326 279 0 0 chr4 12007986 12008065 -190320282 - L2 LINE L2 -6 3307 3229 335 310 41 41 chr4 12008094 12008239 -190320108 + L2 LINE L2 3169 3313 0 302 355 8 8 chr4 12008389 12008510 -190319837 - MIR SINE MIR -131 131 11 336 167 0 0 chr4 12008714 12008786 -190319561 + GA-rich Low_complexity Low_complexity 3 74 0 203 275 43 14 chr4 12009285 12009354 -190318993 + MIR3 SINE MIR 104 174 -34 409 104 26 13 chr4 12009447 12009524 -190318823 + CT-rich Low_complexity Low_complexity 5 82 0 985 192 0 0 chr4 12009973 12010129 -190318218 - FRAM SINE Alu -21 155 1 236 191 21 0 chr4 12011898 12011945 -190316402 + L2 LINE L2 3261 3308 -5 716 262 41 0 chr4 12012049 12012221 -190316126 + MER97a DNA MER1_type? 1 179 -715 228 316 88 75 chr4 12012353 12012729 -190315618 - L2 LINE L2 0 3313 2933 2400 133 30 25 chr4 12012849 12013211 -190315136 + THE1B LTR MaLR 1 364 0 274 372 0 0 chr4 12013480 12013574 -190314773 - MIR3 SINE MIR -46 162 69 27 49 0 0 chr4 12014337 12014378 -190313969 + AT_rich Low_complexity Low_complexity 1 41 0 7102 167 45 25 chr4 12014677 12015001 -190313346 - Tigger2 DNA MER2_type 0 2718 2402 195 42 0 0 chr4 12015001 12015025 -190313322 + (GGA)n Simple_repeat Simple_repeat 3 26 0 7102 167 45 25 chr4 12015025 12015343 -190313004 - Tigger2 DNA MER2_type -316 2402 2092 198 0 0 0 chr4 12015343 12015365 -190312982 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7102 167 45 25 chr4 12015365 12016022 -190312325 - Tigger2 DNA MER2_type -626 2092 1393 3399 163 27 13 chr4 12016018 12016638 -190311709 - Tigger2 DNA MER2_type -2089 629 1 * 209 300 0 17 chr4 12017828 12017888 -190310459 + L3 LINE CR1 1258 1316 -261 22 0 0 0 chr4 12017906 12017928 -190310419 + AT_rich Low_complexity Low_complexity 1 22 0 2584 84 14 11 chr4 12018241 12018609 -190309738 - L1P4 LINE L1 -401 5767 5399 1709 83 28 0 chr4 12018609 12018822 -190309525 + L1PA11 LINE L1 5951 6172 -2 272 281 90 0 chr4 12018828 12018917 -190309430 - LTR33 LTR ERVL -424 97 1 2168 140 53 31 chr4 12019018 12019374 -190308973 - THE1B LTR MaLR 0 364 1 338 290 46 8 chr4 12019738 12019869 -190308478 - MIR SINE MIR 0 262 127 1183 279 98 19 chr4 12019876 12020228 -190308119 + LTR16B LTR ERVL 8 400 -64 1334 223 65 46 chr4 12020228 12020595 -190307752 + MLT1A2 LTR MaLR 1 374 0 1183 279 98 19 chr4 12020595 12020662 -190307685 + LTR16B LTR ERVL 400 460 -4 290 320 70 6 chr4 12021059 12021215 -190307132 + MIR SINE MIR 67 232 -30 2526 71 0 0 chr4 12021237 12021548 -190306799 + AluY SINE Alu 1 311 0 359 314 90 16 chr4 12022105 12022293 -190306054 + MIR SINE MIR 49 250 -12 2394 105 0 3 chr4 12022897 12023211 -190305136 - AluSq SINE Alu 0 313 1 646 227 87 43 chr4 12023833 12023888 -190304459 + MIR SINE MIR 57 108 -154 1685 226 43 6 chr4 12023888 12024238 -190304109 + MLT1A1 LTR MaLR 1 363 -2 646 227 87 43 chr4 12024238 12024367 -190303980 + MIR SINE MIR 108 249 -13 308 296 125 11 chr4 12024478 12024654 -190303693 + MIR SINE MIR 25 220 -42 2372 90 0 10 chr4 12024656 12024968 -190303379 + AluY SINE Alu 1 309 -2 186 103 0 0 chr4 12025113 12025142 -190303205 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 349 318 41 35 chr4 12025753 12025923 -190302424 - MIR SINE MIR -76 186 16 1792 194 7 77 chr4 12026432 12026849 -190301498 + MLT1B LTR MaLR 1 388 -2 4315 174 6 17 chr4 12027532 12028316 -190300031 + L1MA8 LINE L1 5513 6288 -3 388 97 14 14 chr4 12028719 12028791 -190299556 + (TG)n Simple_repeat Simple_repeat 1 72 0 1626 186 133 16 chr4 12028884 12029266 -190299081 - MLT1C LTR MaLR -18 449 23 254 356 42 0 chr4 12029288 12029406 -190298941 + MIR SINE MIR 63 185 -77 239 279 0 23 chr4 12030475 12030561 -190297786 - L1MC4 LINE L1 -1339 6703 6620 313 280 133 7 chr4 12031548 12031691 -190296656 + MIR SINE MIR 8 168 -94 316 254 161 17 chr4 12032759 12032877 -190295470 - MIR SINE MIR -125 137 3 307 326 47 8 chr4 12032966 12033095 -190295252 - MIR SINE MIR -70 192 59 358 220 17 127 chr4 12033627 12033745 -190294602 + MIR SINE MIR 49 153 -109 403 321 102 63 chr4 12035016 12035677 -190292670 + L2 LINE L2 2567 3313 0 393 311 93 6 chr4 12036120 12036303 -190292044 + MIR SINE MIR 10 208 -54 203 307 114 23 chr4 12036370 12036458 -190291889 - MIR SINE MIR -136 126 31 187 316 75 128 chr4 12036974 12037240 -190291107 - L2 LINE L2 -34 3238 2987 1601 197 194 21 chr4 12037579 12038006 -190290341 + MLT1D LTR MaLR 5 505 0 267 283 43 43 chr4 12038018 12038145 -190290202 - MIR SINE MIR -62 146 25 228 86 0 0 chr4 12038296 12038331 -190290016 + (A)n Simple_repeat Simple_repeat 1 35 0 473 273 110 53 chr4 12038977 12039186 -190289161 + MLT1H LTR MaLR 326 546 -3 185 189 38 38 chr4 12039190 12039243 -190289104 + L2 LINE L2 1656 1708 -1606 188 239 22 0 chr4 12040328 12040374 -190287973 + L2 LINE L2 3267 3313 0 398 343 20 14 chr4 12040477 12040623 -190287724 - MIR SINE MIR -111 151 5 267 103 0 0 chr4 12040683 12040722 -190287625 + (A)n Simple_repeat Simple_repeat 1 39 0 481 287 94 33 chr4 12041470 12041534 -190286813 + MIR SINE MIR 5 64 -198 1540 242 125 21 chr4 12041534 12042117 -190286230 + LTR48B LTR ERV1 1 644 0 481 287 94 33 chr4 12042117 12042233 -190286114 + MIR SINE MIR 64 196 -66 522 332 135 23 chr4 12042803 12043240 -190285107 + L2 LINE L2 1901 2386 -928 24 0 0 0 chr4 12043327 12043351 -190284996 + AT_rich Low_complexity Low_complexity 1 24 0 207 341 57 11 chr4 12044263 12044351 -190283996 - MIR SINE MIR -140 122 31 27 49 0 0 chr4 12044640 12044681 -190283666 + AT_rich Low_complexity Low_complexity 1 41 0 303 294 33 0 chr4 12044826 12044918 -190283429 - MIR3 SINE MIR -8 200 106 196 373 13 0 chr4 12045315 12045390 -190282957 + MIR SINE MIR 18 93 -169 422 294 102 33 chr4 12045720 12046084 -190282263 - L1ME LINE L1 -352 5769 5381 371 311 165 12 chr4 12046372 12046536 -190281811 + MER5A DNA MER1_type 1 189 0 46 78 0 0 chr4 12046699 12046801 -190281546 + AT_rich Low_complexity Low_complexity 1 102 0 650 323 46 30 chr4 12046801 12047303 -190281044 - L1ME LINE L1 -1303 4843 4334 546 246 15 0 chr4 12047379 12047513 -190280834 - MLT1F1 LTR MaLR 0 593 458 341 125 16 16 chr4 12047527 12047591 -190280756 + L1M2 LINE L1 5685 5748 -543 686 183 172 11 chr4 12047599 12047785 -190280562 - L1PA16 LINE L1 -1 6165 5950 653 226 79 102 chr4 12047786 12048223 -190280124 - MLT1F1 LTR MaLR -138 455 1 335 302 10 0 chr4 12049305 12049401 -190278946 - L2 LINE L2 0 3313 3217 187 179 0 0 chr4 12049481 12049509 -190278838 - L2 LINE L2 -254 3059 3032 254 375 29 47 chr4 12049987 12050264 -190278083 + L2 LINE L2 2804 3075 -197 1369 213 18 18 chr4 12050399 12050685 -190277662 + AluJo SINE Alu 1 286 -26 270 255 88 20 chr4 12050699 12050801 -190277546 + L2 LINE L2 3200 3308 -5 1087 174 27 8 chr4 12050868 12051126 -190277221 - L1MA9 LINE L1 0 6312 6050 957 163 112 20 chr4 12051128 12051305 -190277042 + MSTB LTR MaLR 3 200 -196 1741 183 85 10 chr4 12051305 12051703 -190276644 - MSTA LTR MaLR 0 428 1 957 163 112 20 chr4 12051703 12051739 -190276608 + MSTB LTR MaLR 200 231 -165 7304 173 89 13 chr4 12051739 12053240 -190275107 - MSTA-int LTR MaLR -35 1616 1 2081 159 72 8 chr4 12053240 12053642 -190274705 - MSTA LTR MaLR 0 428 1 1034 172 64 5 chr4 12053647 12053850 -190274497 + MSTB LTR MaLR 212 426 0 3278 164 44 65 chr4 12053851 12054103 -190274244 - L1MA9 LINE L1 -259 6053 5797 1221 200 14 0 chr4 12054103 12054393 -190273954 - L1MA4 LINE L1 -6 6294 6001 3278 164 44 65 chr4 12054393 12054622 -190273725 - L1MA9 LINE L1 -515 5797 5565 1811 158 54 35 chr4 12054622 12054990 -190273357 + THE1C LTR MaLR 1 375 0 3278 164 44 65 chr4 12054990 12055585 -190272762 - L1MA9 LINE L1 -747 5565 5005 2427 236 32 0 chr4 12055583 12056292 -190272055 - L1MA9 LINE L1 -2251 3895 3164 * 484 154 0 0 chr4 12056464 12056542 -190271805 - MLT1C LTR MaLR 0 467 390 370 223 117 0 chr4 12056600 12056703 -190271644 + MLT1H1 LTR MaLR 1 115 -352 289 217 14 0 chr4 12056705 12056774 -190271573 + MLT1C LTR MaLR 398 467 0 351 362 41 23 chr4 12056934 12057155 -190271192 + MIR SINE MIR 12 236 -26 3020 67 10 0 chr4 12057967 12058383 -190269964 - THE1A-int LTR MaLR -1160 420 1 1662 153 7 4 chr4 12058688 12058969 -190269378 - THE1A LTR MaLR -2 353 72 6343 105 0 0 chr4 12058971 12059854 -190268493 + THE1B-int LTR MaLR 698 1580 0 2106 159 5 24 chr4 12059854 12060225 -190268122 + THE1B LTR MaLR 1 364 0 816 292 111 50 chr4 12060231 12060524 -190267823 - L2 LINE L2 -216 3097 2823 288 111 0 0 chr4 12060524 12060569 -190267778 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 1684 172 7 0 chr4 12060576 12060855 -190267492 - AluJb SINE Alu -21 291 11 816 292 111 50 chr4 12060855 12061090 -190267257 - L2 LINE L2 -495 2818 2534 186 250 125 16 chr4 12061123 12061187 -190267160 + MIR SINE MIR 171 241 -21 350 262 19 28 chr4 12061274 12061305 -190267042 + CT-rich Low_complexity Low_complexity 2 32 -75 1916 129 22 0 chr4 12061305 12061576 -190266771 - AluSq SINE Alu -13 300 24 350 262 19 28 chr4 12061576 12061651 -190266696 + CT-rich Low_complexity Low_complexity 32 107 0 456 320 59 39 chr4 12061676 12061932 -190266415 + MIR SINE MIR 2 262 0 271 362 70 62 chr4 12062023 12062280 -190266067 - L2 LINE L2 -94 3178 2920 903 211 36 10 chr4 12062906 12063100 -190265247 - MER58A DNA MER1_type 0 224 26 1331 269 27 18 chr4 12063612 12064054 -190264293 + MLT1H1 LTR MaLR 102 547 -8 223 191 43 21 chr4 12064246 12064293 -190264054 + L2 LINE L2 3023 3070 -202 304 277 12 0 chr4 12064631 12064714 -190263633 - MLT1I LTR MaLR -15 394 311 386 247 86 40 chr4 12064824 12064998 -190263349 - MLT1J2 LTR MaLR -227 223 42 820 211 32 11 chr4 12065219 12065404 -190262943 + MER20 DNA MER1_type 30 218 -1 234 330 70 55 chr4 12065434 12065634 -190262713 - MLT1I LTR MaLR -204 345 143 650 289 80 22 chr4 12065822 12066047 -190262300 + MIR SINE MIR 12 249 -13 408 293 50 20 chr4 12066267 12066465 -190261882 + L3 LINE CR1 1221 1424 -153 257 256 70 54 chr4 12066606 12066735 -190261612 - LTR16C LTR ERVL -166 325 195 243 364 34 0 chr4 12067236 12067324 -190261023 + MIR SINE MIR 80 170 -92 314 322 14 28 chr4 12067616 12067759 -190260588 + MIR3 SINE MIR 62 202 -6 1967 138 21 58 chr4 12067765 12067834 -190260513 - THE1B LTR MaLR 0 364 294 1995 134 7 0 chr4 12067834 12068161 -190260186 - AluSq SINE Alu 0 329 1 1967 138 21 58 chr4 12068161 12068468 -190259879 - THE1B LTR MaLR -70 294 1 266 303 101 0 chr4 12070134 12070253 -190258094 - MIR3 SINE MIR -48 160 30 29 0 0 0 chr4 12070467 12070496 -190257851 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr4 12070917 12070937 -190257410 + (T)n Simple_repeat Simple_repeat 1 20 0 258 287 0 35 chr4 12071082 12071169 -190257178 + L2 LINE L2 3221 3304 -9 311 215 51 0 chr4 12071903 12071982 -190256365 + MER103 DNA DNA 17 99 -67 433 323 64 48 chr4 12072521 12073015 -190255332 - L2 LINE L2 -7 3265 2780 432 0 0 0 chr4 12073015 12073063 -190255284 + (TAA)n Simple_repeat Simple_repeat 2 49 0 433 323 64 48 chr4 12073063 12073095 -190255252 - L2 LINE L2 -492 2780 1960 342 362 59 0 chr4 12073384 12073536 -190254811 + MIR3 SINE MIR 21 181 -27 843 275 173 20 chr4 12073819 12074212 -190254135 - MLT1F LTR MaLR -2 540 88 266 185 0 19 chr4 12074989 12075043 -190253304 + MLT1F1 LTR MaLR 69 121 -446 676 209 72 121 chr4 12075044 12075407 -190252940 + MLT1F1 LTR MaLR 223 567 0 319 250 39 16 chr4 12075413 12075541 -190252806 + MER113 DNA MER1_type? 63 193 -328 314 329 56 14 chr4 12075610 12075753 -190252594 + MIR3 SINE MIR 20 168 -40 180 111 0 0 chr4 12075794 12075821 -190252526 + (TAA)n Simple_repeat Simple_repeat 2 28 0 248 344 32 21 chr4 12075874 12075967 -190252380 - MIR SINE MIR -147 115 22 2154 136 27 41 chr4 12076902 12077271 -190251076 - THE1B LTR MaLR 0 364 1 317 297 45 0 chr4 12078201 12078312 -190250035 + L1ME LINE L1 5727 5842 -279 301 268 125 18 chr4 12079023 12079135 -190249212 + MIR3 SINE MIR 63 186 -22 416 288 220 17 chr4 12079334 12079511 -190248836 - MIR SINE MIR -5 257 45 1985 123 16 16 chr4 12079688 12079996 -190248351 + AluSq SINE Alu 4 311 -2 799 144 11 28 chr4 12080015 12080195 -190248152 + GA-rich Low_complexity Low_complexity 2 178 0 1107 246 32 7 chr4 12080341 12080626 -190247721 - MER87 LTR ERV1 -53 488 197 321 317 57 0 chr4 12081004 12081127 -190247220 - MIR SINE MIR -113 149 20 1905 168 27 0 chr4 12081294 12081592 -190246755 + AluSx SINE Alu 1 306 -6 260 271 76 17 chr4 12082158 12082276 -190246071 - L2 LINE L2 -237 3035 2911 321 283 158 39 chr4 12082296 12082498 -190245849 - MIR SINE MIR -13 249 20 206 61 0 30 chr4 12082671 12082704 -190245643 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 883 145 0 0 chr4 12082708 12082832 -190245515 - AluJb SINE Alu -188 124 1 1947 142 3 0 chr4 12083030 12083374 -190244973 - AluSx SINE Alu 0 345 1 1492 159 58 48 chr4 12083410 12083705 -190244642 + AluSx SINE Alu 1 298 -14 25 0 0 0 chr4 12084252 12084277 -190244070 + AT_rich Low_complexity Low_complexity 1 25 0 1502 91 55 0 chr4 12084462 12084681 -190243666 - L1PA11 LINE L1 -4 6170 5940 2476 76 0 0 chr4 12086020 12086324 -190242023 - AluY SINE Alu -7 304 1 212 313 9 8 chr4 12086835 12086977 -190241370 - MIR3 SINE MIR -1 207 91 280 269 32 43 chr4 12087125 12087218 -190241129 - MIR SINE MIR -48 214 123 399 243 20 169 chr4 12087808 12088158 -190240189 + L2 LINE L2 3012 3309 -4 205 279 93 12 chr4 12088841 12088927 -190239420 - MIR SINE MIR -54 208 116 3960 190 47 22 chr4 12089281 12090248 -190238099 + L1MC2 LINE L1 5341 6331 -13 238 171 32 32 chr4 12091112 12091235 -190237112 + (TA)n Simple_repeat Simple_repeat 2 124 0 45 0 0 0 chr4 12091297 12091342 -190237005 + AT_rich Low_complexity Low_complexity 1 45 0 362 209 41 35 chr4 12091487 12091659 -190236688 + (TTATA)n Simple_repeat Simple_repeat 5 177 0 * 374 206 33 33 chr4 12091591 12091771 -190236576 + (TA)n Simple_repeat Simple_repeat 1 180 0 183 302 19 0 chr4 12093014 12093067 -190235280 + L2 LINE L2 3018 3071 -201 212 306 42 0 chr4 12093126 12093198 -190235149 + MIR SINE MIR 18 92 -170 533 294 59 43 chr4 12093643 12093898 -190234449 + MIR SINE MIR 1 259 -3 214 330 29 72 chr4 12093914 12094123 -190234224 - L2 LINE L2 -218 3054 2855 726 208 83 42 chr4 12094160 12094401 -190233946 + AluSg SINE Alu 1 251 -59 361 112 17 60 chr4 12095393 12095509 -190232838 + (GAA)n Simple_repeat Simple_repeat 2 112 0 223 316 13 13 chr4 12096866 12096945 -190231402 + MIR SINE MIR 15 93 -169 352 366 43 26 chr4 12098166 12098398 -190229949 - L2 LINE L2 -462 2852 2617 180 0 0 0 chr4 12098785 12098805 -190229542 + (CA)n Simple_repeat Simple_repeat 2 21 0 728 275 94 26 chr4 12099874 12100183 -190228164 + LTR33 LTR ERVL 14 343 -178 930 269 97 17 chr4 12100213 12100733 -190227614 - L2 LINE L2 -45 3268 2713 263 85 21 0 chr4 12100733 12100780 -190227567 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1770 133 0 27 chr4 12100783 12101076 -190227271 - AluSx SINE Alu -27 285 1 344 232 14 84 chr4 12101341 12101418 -190226929 + MLT1L LTR MaLR 134 198 -417 1998 135 14 3 chr4 12101418 12101715 -190226632 + AluSx SINE Alu 1 300 -12 344 232 14 84 chr4 12101715 12101779 -190226568 + MLT1L LTR MaLR 198 265 -350 804 276 14 9 chr4 12102141 12102362 -190225985 - MER58A DNA MER1_type -1 223 2 27 73 0 0 chr4 12102444 12102499 -190225848 + AT_rich Low_complexity Low_complexity 1 55 0 191 267 58 35 chr4 12103580 12103666 -190224681 + MIR3 SINE MIR 83 170 -38 4075 112 7 3 chr4 12103803 12104409 -190223938 - L1PA7 LINE L1 -13 6141 5534 21 0 0 0 chr4 12106055 12106076 -190222271 + AT_rich Low_complexity Low_complexity 1 21 0 2372 108 0 0 chr4 12106105 12106411 -190221936 - AluSg SINE Alu -4 306 1 2280 66 7 7 chr4 12106880 12107183 -190221164 - AluYa5 SINE Alu -8 303 1 2105 121 22 24 chr4 12157645 12158016 -190170331 + L1MA3 LINE L1 5936 6305 0 2191 192 42 32 chr4 12158023 12158621 -190169726 + L1MA6 LINE L1 5697 6300 0 23 0 0 0 chr4 12158959 12158982 -190169365 + AT_rich Low_complexity Low_complexity 1 23 0 39659 40 36 5 chr4 12159170 12164410 -190163937 + L1P LINE L1 2 5403 -743 14611 107 15 17 chr4 12164520 12167456 -190160891 - HERVH LTR ERV1 -4726 2987 1 3054 89 4 30 chr4 12167458 12167918 -190160429 - LTR7 LTR ERV1 -2 448 1 219 298 46 17 chr4 12168703 12168829 -190159518 - MIR SINE MIR -63 145 53 346 246 59 68 chr4 12169042 12169160 -190159187 - MIR SINE MIR -60 202 86 941 198 77 30 chr4 12169285 12169583 -190158764 - L1MC3 LINE L1 -3 7782 7471 1107 189 15 0 chr4 12169584 12169790 -190158557 - L1MC3 LINE L1 -498 7287 7079 481 158 17 0 chr4 12169970 12170090 -190158257 + (TA)n Simple_repeat Simple_repeat 1 122 0 841 167 40 7 chr4 12170108 12170258 -190158089 - MSTB LTR MaLR -58 368 214 2774 267 49 19 chr4 12170265 12171435 -190156912 - L1M4 LINE L1 -1822 4324 3120 198 352 42 0 chr4 12171750 12171821 -190156526 + L2 LINE L2 3234 3307 -6 2093 142 20 6 chr4 12172674 12173020 -190155327 + THE1B LTR MaLR 1 351 -13 231 394 36 16 chr4 12173413 12173606 -190154741 - L2 LINE L2 -182 3090 2894 191 333 0 0 chr4 12173720 12173771 -190154576 + L2 LINE L2 3218 3268 -4 24 0 0 0 chr4 12174071 12174095 -190154252 + AT_rich Low_complexity Low_complexity 1 24 0 1205 218 132 32 chr4 12174394 12174934 -190153413 + MER67B LTR ERV1 43 511 -3 3148 49 0 0 chr4 12174954 12175340 -190153007 - L1PA3 LINE L1 0 6155 5770 2144 38 4 0 chr4 12175403 12175666 -190152681 - L1PA2 LINE L1 0 6155 5892 521 161 21 0 chr4 12175766 12175859 -190152488 + HERVH LTR ERV1 3196 3290 -4423 * 3053 137 0 6 chr4 12175849 12176354 -190151993 + HERVH LTR ERV1 3492 3993 -3720 4067 151 0 1 chr4 12176356 12177019 -190151328 + HERVH LTR ERV1 4488 5149 -2564 1243 138 18 9 chr4 12177020 12177238 -190151109 + HERVH LTR ERV1 5600 5819 -1894 2262 90 48 13 chr4 12177238 12177615 -190150732 + HERVH LTR ERV1 7324 7713 0 2037 104 5 5 chr4 12177615 12177974 -190150373 + LTR7 LTR ERV1 1 448 -2 21 0 0 0 chr4 12178724 12178745 -190149602 + AT_rich Low_complexity Low_complexity 1 21 0 995 88 15 0 chr4 12180441 12180578 -190147769 + AluSc SINE Alu 165 303 -6 2089 192 17 19 chr4 12180600 12181068 -190147279 + L1MB5 LINE L1 5658 6124 -50 858 203 39 0 chr4 12181069 12181276 -190147071 + L1MA6 LINE L1 6067 6281 -19 934 235 119 92 chr4 12182631 12182797 -190145550 - MLT1F1 LTR MaLR 0 567 407 1678 138 32 21 chr4 12182797 12183132 -190145215 + AluSx SINE Alu 1 338 0 934 235 119 92 chr4 12183132 12183504 -190144843 - MLT1F1 LTR MaLR -160 407 3 313 295 25 16 chr4 12183576 12183698 -190144649 + MIR SINE MIR 69 191 -71 2339 60 0 0 chr4 12184575 12184886 -190143461 - AluY SINE Alu 0 311 1 1947 90 4 8 chr4 12186142 12186398 -190141949 - AluY SINE Alu -13 298 44 642 200 97 0 chr4 12186399 12186554 -190141793 - L1MC1 LINE L1 -9 6324 6155 340 336 25 17 chr4 12186999 12187118 -190141229 + MIR SINE MIR 12 131 -131 217 345 69 28 chr4 12187119 12187264 -190141083 - L2 LINE L2 -1 3312 3162 317 332 147 22 chr4 12187442 12187762 -190140585 - L2 LINE L2 -251 3062 2702 854 291 156 44 chr4 12188616 12189449 -190138898 - L2 LINE L2 0 3313 2339 1145 201 38 112 chr4 12189672 12190066 -190138281 + MLT1A1 LTR MaLR 1 365 0 721 281 74 157 chr4 12190623 12191978 -190136369 + L2 LINE L2 1429 2671 -643 5517 149 10 16 chr4 12192110 12193086 -190135261 - L1MA4 LINE L1 -14 6286 5317 787 184 29 0 chr4 12193088 12193224 -190135123 - FRAM SINE Alu -45 131 1 2741 184 35 2 chr4 12193573 12194123 -190134224 - L1MA4 LINE L1 -873 5273 4706 387 127 0 0 chr4 12194207 12194270 -190134077 + (TCCC)n Simple_repeat Simple_repeat 1 63 0 22 0 0 0 chr4 12194321 12194343 -190134004 + AT_rich Low_complexity Low_complexity 1 22 0 1708 212 132 42 chr4 12194744 12194778 -190133569 - MLT2B1 LTR ERVL 0 520 490 441 0 0 0 chr4 12194778 12194827 -190133520 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 1708 212 132 42 chr4 12194827 12195269 -190133078 - MLT2B1 LTR ERVL -30 490 1 1413 303 95 9 chr4 12195520 12196065 -190132282 - MLT1E2 LTR MaLR -3 623 32 * 1504 233 85 23 chr4 12196030 12196429 -190131918 + MLT2B1 LTR ERVL 7 430 -90 239 232 0 18 chr4 12196532 12196588 -190131759 - MLT1E2 LTR MaLR -438 67 13 23 33 0 0 chr4 12199546 12199576 -190128771 + AT_rich Low_complexity Low_complexity 1 30 0 2514 78 28 8 chr4 12199576 12199934 -190128413 - L1PA8A LINE L1 -5 6126 5762 497 304 93 78 chr4 12200019 12200992 -190127355 + L1ME4a LINE L1 4404 5391 -755 432 332 108 31 chr4 12201035 12201696 -190126651 - L2 LINE L2 0 3313 2595 339 289 60 48 chr4 12201867 12202116 -190126231 + L1ME4a LINE L1 5575 5826 -295 22 56 0 0 chr4 12202201 12202237 -190126110 + AT_rich Low_complexity Low_complexity 1 36 0 31 26 0 0 chr4 12202298 12202336 -190126011 + AT_rich Low_complexity Low_complexity 1 38 0 374 364 54 29 chr4 12202636 12202916 -190125431 + L2 LINE L2 2986 3272 0 3927 180 36 34 chr4 12202991 12203853 -190124494 + L1MC2 LINE L1 5373 6236 -108 238 348 130 29 chr4 12204082 12204604 -190123743 + L2 LINE L2 2710 3290 -23 375 289 43 75 chr4 12204665 12204852 -190123495 + MIR3 SINE MIR 21 201 -7 201 176 0 0 chr4 12205129 12205163 -190123184 + T-rich Low_complexity Low_complexity 1 34 0 2130 148 97 8 chr4 12206546 12206939 -190121408 + MSTA LTR MaLR 1 428 0 212 77 26 0 chr4 12207135 12207174 -190121173 + (CA)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chr4 12208204 12208225 -190120122 + AT_rich Low_complexity Low_complexity 1 21 0 2089 113 0 7 chr4 12208240 12208533 -190119814 - AluSc SINE Alu -18 291 1 204 40 0 0 chr4 12208538 12208563 -190119784 + (T)n Simple_repeat Simple_repeat 1 25 0 1948 187 6 0 chr4 12208903 12209234 -190119113 - MER7A DNA MER2_type -12 334 4 205 318 182 0 chr4 12209446 12209556 -190118791 - L2 LINE L2 -1 3312 3183 386 276 23 0 chr4 12209608 12209695 -190118652 - L2 LINE L2 -257 3056 2968 380 315 31 8 chr4 12209771 12209901 -190118446 - MER94 DNA DNA 0 134 2 383 245 89 29 chr4 12210582 12210707 -190117640 + FLAM_A SINE Alu 13 131 -2 1921 193 28 96 chr4 12210846 12211464 -190116883 - L1MB7 LINE L1 -16 6168 5593 214 297 44 22 chr4 12211467 12211558 -190116789 - L3 LINE CR1 -681 896 804 1751 161 3 43 chr4 12211567 12211889 -190116458 + AluJb SINE Alu 1 309 -3 220 285 99 63 chr4 12211889 12212101 -190116246 + L2 LINE L2 3080 3302 -11 366 264 88 8 chr4 12214025 12214150 -190114197 - L2 LINE L2 0 3313 3179 2106 117 0 0 chr4 12214305 12214621 -190113726 - AluSc SINE Alu 0 316 1 205 373 67 0 chr4 12214771 12214846 -190113501 + L2 LINE L2 3138 3217 -55 192 77 0 0 chr4 12215767 12215793 -190112554 + (T)n Simple_repeat Simple_repeat 1 26 0 454 269 55 43 chr4 12215895 12216152 -190112195 + L1ME4a LINE L1 5624 5883 -238 1051 205 63 57 chr4 12216401 12216718 -190111629 + MLT1A2 LTR MaLR 1 319 -55 2373 80 0 3 chr4 12216718 12217020 -190111327 + AluY SINE Alu 1 301 -10 2665 73 6 0 chr4 12217023 12217379 -190110968 + L1PA13 LINE L1 5803 6160 -3 3881 30 0 0 chr4 12217626 12218101 -190110246 - L1PA4 LINE L1 -792 5354 4880 6488 32 6 0 chr4 12218102 12218878 -190109469 + L1PA4 LINE L1 5375 6155 0 204 340 21 28 chr4 12219184 12219328 -190109019 - L2 LINE L2 -12 3301 3159 265 310 102 19 chr4 12219337 12219857 -190108490 + L1MC4a LINE L1 3724 4286 -1860 482 0 17 0 chr4 12219882 12219940 -190108407 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 31 58 0 0 chr4 12220819 12220871 -190107476 + AT_rich Low_complexity Low_complexity 1 52 0 337 257 176 65 chr4 12221125 12221236 -190107111 + L1MC4a LINE L1 5619 5716 -2092 1515 99 27 5 chr4 12221236 12221459 -190106888 - MER30 DNA MER1_type 0 230 3 337 257 176 65 chr4 12221459 12221608 -190106739 + L1MC4a LINE L1 5716 5908 -1900 200 226 0 16 chr4 12221614 12221676 -190106671 + (TTTA)n Simple_repeat Simple_repeat 3 63 0 279 329 134 24 chr4 12222885 12223049 -190105298 - MIR3 SINE MIR -19 189 8 214 288 0 0 chr4 12223327 12223386 -190104961 + A-rich Low_complexity Low_complexity 1 59 0 234 0 0 0 chr4 12223762 12223788 -190104559 + (TG)n Simple_repeat Simple_repeat 2 27 0 452 284 61 6 chr4 12224050 12224213 -190104134 + MIR SINE MIR 16 185 -62 499 289 25 1 chr4 12224260 12224490 -190103857 - MER67A LTR ERV1 0 543 273 681 173 14 125 chr4 12224631 12224839 -190103508 - MER67B LTR ERV1 -437 224 40 5532 113 1 5 chr4 12224839 12225612 -190102735 + THE1B-int LTR MaLR 811 1580 0 1859 158 58 0 chr4 12225612 12225954 -190102393 + THE1B LTR MaLR 1 362 -2 4131 151 89 7 chr4 12227655 12228416 -190099931 + LTR1B LTR ERV1 3 826 0 236 301 62 106 chr4 12228587 12228813 -190099534 + MIR SINE MIR 20 235 -27 47 73 0 0 chr4 12228831 12228927 -190099420 + AT_rich Low_complexity Low_complexity 1 96 0 299 224 0 10 chr4 12229102 12229200 -190099147 + CT-rich Low_complexity Low_complexity 2 98 0 247 296 37 0 chr4 12230854 12230935 -190097412 - MIR3 SINE MIR -9 199 116 292 252 176 17 chr4 12231379 12231498 -190096849 - MIR SINE MIR -86 176 39 211 285 39 69 chr4 12231711 12231841 -190096506 - L2 LINE L2 0 3313 3188 1770 106 0 4 chr4 12232140 12232394 -190095953 + L1PA12 LINE L1 5901 6153 -15 207 133 0 0 chr4 12232910 12232955 -190095392 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 258 302 85 9 chr4 12233119 12233225 -190095122 - MIR SINE MIR -95 167 54 690 291 46 12 chr4 12233392 12233633 -190094714 + MIR SINE MIR 14 262 0 195 377 41 0 chr4 12234009 12234131 -190094216 - MIR SINE MIR -75 187 61 794 268 6 0 chr4 12234332 12234515 -190093832 + MER58A DNA MER1_type 41 224 0 240 35 0 0 chr4 12235670 12235699 -190092648 + (A)n Simple_repeat Simple_repeat 1 29 0 186 319 43 53 chr4 12237299 12237393 -190090954 - MER5A DNA MER1_type -68 121 29 1964 129 21 0 chr4 12237712 12237998 -190090349 - AluSx SINE Alu -20 292 1 29 47 0 0 chr4 12238026 12238069 -190090278 + AT_rich Low_complexity Low_complexity 1 43 0 253 261 152 11 chr4 12238314 12238406 -190089941 + MER114 LTR ERV 1 105 -543 988 213 122 3 chr4 12238487 12238806 -190089541 + MER114 LTR ERV 196 552 -96 2588 187 12 8 chr4 12240391 12240905 -190087442 - L1MC1 LINE L1 -1 6332 5817 219 69 0 0 chr4 12240915 12240944 -190087403 + (TA)n Simple_repeat Simple_repeat 2 30 0 749 158 36 0 chr4 12240984 12241123 -190087224 - L1PA16 LINE L1 -9 6157 6014 1624 177 65 19 chr4 12241127 12241527 -190086820 - THE1C LTR MaLR 0 428 1 9270 129 19 42 chr4 12241527 12243142 -190085205 - THE1C-int LTR MaLR 0 1580 3 1621 176 49 43 chr4 12243148 12243517 -190084830 - THE1C LTR MaLR -4 371 1 1994 148 21 0 chr4 12243517 12243849 -190084498 - L1PA16 LINE L1 -152 6014 5676 745 181 16 85 chr4 12243849 12244037 -190084310 - FAM SINE Alu 0 175 1 1551 180 41 0 chr4 12244175 12244470 -190083877 - L1MC1 LINE L1 -527 5806 5500 2164 68 0 31 chr4 12244885 12245200 -190083147 + AluY SINE Alu 1 306 0 197 132 26 0 chr4 12246005 12246043 -190082304 + (TA)n Simple_repeat Simple_repeat 2 40 0 316 342 89 20 chr4 12246555 12246757 -190081590 + L1MC4 LINE L1 5521 5736 -2072 301 247 22 22 chr4 12246796 12246885 -190081462 + L1MC4 LINE L1 6615 6703 -1339 213 39 0 0 chr4 12246941 12246967 -190081380 + (TG)n Simple_repeat Simple_repeat 2 27 0 2096 131 0 13 chr4 12247057 12247369 -190080978 - AluSg SINE Alu -2 308 1 965 167 29 6 chr4 12247371 12247545 -190080802 - MLT1B LTR MaLR -212 178 1 1766 154 13 26 chr4 12248438 12248743 -190079604 - AluSx SINE Alu -10 302 2 278 354 7 49 chr4 12248764 12248908 -190079439 - MIR3 SINE MIR -14 194 57 191 273 146 36 chr4 12251019 12251129 -190077218 + MIR SINE MIR 32 153 -109 2223 92 0 35 chr4 12251615 12251932 -190076415 + AluSg SINE Alu 1 306 -4 225 0 0 0 chr4 12252589 12252614 -190075733 + (TA)n Simple_repeat Simple_repeat 1 25 0 951 215 82 90 chr4 12253168 12253536 -190074811 - MLT1A1 LTR MaLR 0 365 1 351 0 0 0 chr4 12253706 12253745 -190074602 + (TG)n Simple_repeat Simple_repeat 1 39 0 796 164 82 0 chr4 12254965 12255160 -190073187 - L1P LINE L1 -2877 3269 3059 1971 232 13 2 chr4 12256016 12256413 -190071934 + MER72 LTR ERV1 322 722 0 1644 263 34 27 chr4 12256414 12257092 -190071255 - L1ME1 LINE L1 -292 5874 5193 277 352 91 30 chr4 12257640 12257870 -190070477 - MLT1K LTR MaLR -286 302 59 279 0 0 0 chr4 12257879 12257910 -190070437 + (A)n Simple_repeat Simple_repeat 1 31 0 262 269 51 13 chr4 12258385 12258463 -190069884 + MIR3 SINE MIR 82 162 -46 218 314 14 14 chr4 12258465 12258535 -190069812 - L2 LINE L2 -4 3268 3199 25218 92 12 35 chr4 12259846 12263732 -190064615 + L1P LINE L1 1550 5347 -799 1093 57 7 0 chr4 12263734 12263875 -190064472 + L1PA7 LINE L1 6008 6149 -5 3416 246 52 21 chr4 12263882 12265139 -190063208 + L1MA9 LINE L1 2260 3555 -2591 3448 220 59 12 chr4 12265142 12266148 -190062199 + L1MA9 LINE L1 4407 5485 -827 4020 136 26 80 chr4 12266148 12266977 -190061370 + LTR1 LTR ERV1 1 785 0 3448 220 59 12 chr4 12266977 12267246 -190061101 + L1MA9 LINE L1 5485 5740 -572 422 33 0 33 chr4 12267252 12267313 -190061034 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 988 269 13 16 chr4 12267334 12267643 -190060704 - L1 LINE L1 -2170 3976 3669 655 144 35 11 chr4 12267643 12267817 -190060530 + (TA)n Simple_repeat Simple_repeat 2 179 0 1513 243 40 28 chr4 12267830 12268329 -190060018 + L1MA9 LINE L1 5770 6274 -38 211 310 20 40 chr4 12268541 12268641 -190059706 + L2 LINE L2 3216 3313 0 290 286 168 6 chr4 12268975 12269136 -190059211 - LTR16C LTR ERVL -8 483 297 503 240 152 54 chr4 12269963 12270006 -190058341 + MER58A DNA MER1_type 1 38 -2382 2244 112 0 3 chr4 12270006 12270309 -190058038 + AluSq SINE Alu 1 302 -11 503 240 152 54 chr4 12270309 12270469 -190057878 + MER58A DNA MER1_type 38 224 0 1750 140 27 10 chr4 12271620 12271912 -190056435 - AluSq SINE Alu -6 307 11 958 121 80 2 chr4 12272112 12272351 -190055996 - MER4E LTR ERV1 0 766 460 1339 98 0 0 chr4 12272352 12272536 -190055811 - MER41A LTR ERV1 0 554 371 2671 173 136 25 chr4 12273039 12273693 -190054654 - LTR8A LTR ERV1 0 727 1 2675 113 76 2 chr4 12274061 12274494 -190053853 + MER4C LTR ERV1 1 465 0 476 250 8 23 chr4 12274625 12274753 -190053594 + MER4B LTR ERV1 1 126 -484 3749 90 47 8 chr4 12274765 12275298 -190053049 + MER41A LTR ERV1 1 554 0 227 167 0 125 chr4 12275298 12275370 -190052977 - MLT1A1 LTR MaLR -298 67 5 23 54 0 0 chr4 12275588 12275625 -190052722 + AT_rich Low_complexity Low_complexity 1 37 0 289 292 28 21 chr4 12275656 12275800 -190052547 + L1MEc LINE L1 57 201 -6195 378 0 0 0 chr4 12275937 12275979 -190052368 + (CA)n Simple_repeat Simple_repeat 2 43 0 359 304 63 0 chr4 12276329 12276487 -190051860 + L1MEc LINE L1 776 943 -5453 205 109 36 36 chr4 12276498 12276553 -190051794 + (TA)n Simple_repeat Simple_repeat 2 56 0 376 264 49 28 chr4 12276572 12276716 -190051631 + L1MEc LINE L1 1362 1508 -4888 815 255 30 38 chr4 12276736 12277003 -190051344 + MLT2D LTR ERVL 73 337 -77 243 0 0 0 chr4 12277003 12277030 -190051317 + (CA)n Simple_repeat Simple_repeat 1 27 0 695 295 65 21 chr4 12277072 12277455 -190050892 + L1MEc LINE L1 1532 1931 -4465 344 312 53 12 chr4 12277465 12277635 -190050712 + LTR41 LTR ERVL 11 187 -586 704 322 25 52 chr4 12277879 12278283 -190050064 + HERVL LTR ERVL 1722 2114 -3540 1061 289 68 24 chr4 12278284 12278949 -190049398 + L1MEc LINE L1 3358 4051 -2164 1669 184 39 91 chr4 12279149 12279588 -190048759 + MSTB1 LTR MaLR 17 432 0 21 0 0 0 chr4 12280340 12280361 -190047986 + AT_rich Low_complexity Low_complexity 1 21 0 615 295 63 0 chr4 12280847 12281037 -190047310 + MER63A DNA MER1_type 9 210 0 285 257 0 37 chr4 12281237 12281346 -190047001 + (TA)n Simple_repeat Simple_repeat 1 105 0 297 253 69 0 chr4 12281370 12281457 -190046890 + L1ME1 LINE L1 6069 6161 -5 240 184 0 0 chr4 12282176 12282225 -190046122 + (TA)n Simple_repeat Simple_repeat 1 49 0 547 297 40 52 chr4 12282475 12282822 -190045525 - MARNA DNA Mariner -101 485 143 30 0 0 0 chr4 12283246 12283276 -190045071 + AT_rich Low_complexity Low_complexity 1 30 0 2105 82 32 4 chr4 12284357 12284636 -190043711 - AluY SINE Alu -24 287 1 1911 134 7 10 chr4 12285609 12285916 -190042431 - AluSq SINE Alu -7 306 1 336 279 0 0 chr4 12286595 12286681 -190041666 + MER33 DNA MER1_type 1 86 -238 513 201 107 60 chr4 12286724 12286958 -190041389 + MER33 DNA MER1_type 118 362 -1 265 354 0 12 chr4 12287168 12287250 -190041097 - L2 LINE L2 -1 3271 3191 1379 170 11 26 chr4 12288504 12288529 -190039818 - L1PA10 LINE L1 -307 5861 5837 2552 151 7 0 chr4 12288529 12288961 -190039386 - L1PA13 LINE L1 0 6163 5729 1379 170 11 26 chr4 12288961 12289206 -190039141 - L1PA10 LINE L1 -331 5837 5595 1295 132 5 0 chr4 12289307 12289496 -190038851 - AluYb8 SINE Alu -128 190 1 1968 184 49 3 chr4 12290389 12290754 -190037593 + MLT1B LTR MaLR 9 390 0 2146 83 0 10 chr4 12291462 12291751 -190036596 + AluY SINE Alu 1 286 -25 706 271 17 64 chr4 12292054 12292142 -190036205 - MIR SINE MIR -34 228 137 1916 124 0 79 chr4 12292142 12292457 -190035890 + AluSx SINE Alu 7 296 -16 706 271 17 64 chr4 12292457 12292604 -190035743 - MIR SINE MIR -125 137 4 307 317 16 16 chr4 12293195 12293318 -190035029 + MIR SINE MIR 140 262 0 201 74 0 0 chr4 12294201 12294228 -190034119 + (T)n Simple_repeat Simple_repeat 1 27 0 1938 142 71 11 chr4 12294827 12295180 -190033167 - THE1C LTR MaLR -1 374 1 270 0 0 0 chr4 12297310 12297340 -190031007 + (TG)n Simple_repeat Simple_repeat 1 30 0 687 272 31 26 chr4 12297944 12298172 -190030175 + MIR SINE MIR 30 258 -4 3261 163 0 11 chr4 12298269 12298802 -190029545 + MER1A DNA MER1_type 1 527 0 23 0 0 0 chr4 12299725 12299748 -190028599 + AT_rich Low_complexity Low_complexity 1 23 0 1942 162 21 29 chr4 12300300 12300640 -190027707 - MER1B DNA MER1_type 0 337 1 900 195 15 45 chr4 12301670 12301870 -190026477 - MER72 LTR ERV1 -528 194 1 452 253 25 101 chr4 12301870 12302169 -190026178 + L1ME2 LINE L1 5875 6155 -7 1857 258 60 27 chr4 12302180 12302787 -190025560 + L1ME1 LINE L1 5106 5763 -403 2024 150 97 8 chr4 12302787 12303180 -190025167 - MSTA LTR MaLR 0 428 1 1857 258 60 27 chr4 12303180 12303563 -190024784 + L1ME1 LINE L1 5763 6132 -34 1233 217 108 25 chr4 12303672 12304032 -190024315 - MLT1B LTR MaLR 0 390 1 1251 235 93 8 chr4 12304033 12304408 -190023939 - MLT1B-int LTR MaLR -1 1370 964 1296 216 73 6 chr4 12304603 12304960 -190023387 - L1MA7 LINE L1 -8 6283 5903 993 201 86 0 chr4 12304967 12305235 -190023112 + L1M2 LINE L1 5087 5377 -769 295 206 0 0 chr4 12305279 12305342 -190023005 + L1MA8 LINE L1 6207 6269 -22 1279 152 4 16 chr4 12305445 12305688 -190022659 + L1M2 LINE L1 5384 5623 -668 279 0 0 0 chr4 12305710 12305741 -190022606 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1801 239 16 13 chr4 12305794 12306172 -190022175 - MLT1B-int LTR MaLR -485 886 510 1912 178 78 18 chr4 12306172 12306572 -190021775 + MSTB LTR MaLR 1 424 -2 1801 239 16 13 chr4 12306572 12306873 -190021474 - MLT1B-int LTR MaLR -861 510 1 353 202 42 76 chr4 12306873 12306992 -190021355 - MLT2B1 LTR ERVL 0 520 330 180 336 58 0 chr4 12307034 12307138 -190021209 + MIR SINE MIR 147 256 -6 242 182 0 0 chr4 12308717 12308761 -190019586 - MLT2B1 LTR ERVL 0 520 477 931 32 16 0 chr4 12308762 12308885 -190019462 + (TAGA)n Simple_repeat Simple_repeat 2 126 0 1515 216 20 0 chr4 12308885 12309228 -190019119 - MER47A DNA MER2_type -6 360 11 180 152 0 0 chr4 12309392 12309425 -190018922 + CT-rich Low_complexity Low_complexity 4 36 0 1282 65 0 0 chr4 12309477 12309646 -190018701 - L1PA4 LINE L1 0 6155 5987 1675 33 0 0 chr4 12309646 12309856 -190018491 + L1PA4 LINE L1 5755 5964 -191 23 0 0 0 chr4 12309893 12309916 -190018431 + AT_rich Low_complexity Low_complexity 1 23 0 2058 261 50 30 chr4 12310047 12310170 -190018177 - L1ME1 LINE L1 -4 6162 6043 309 51 0 0 chr4 12310170 12310209 -190018138 + (CA)n Simple_repeat Simple_repeat 1 39 0 2058 261 50 30 chr4 12310209 12310941 -190017406 - L1ME1 LINE L1 -123 6043 5290 962 285 87 30 chr4 12311069 12311543 -190016804 + MLT1J LTR MaLR 3 503 -8 1644 121 13 86 chr4 12311574 12311887 -190016460 + AluJo SINE Alu 23 312 0 430 271 47 16 chr4 12313592 12313721 -190014626 + LTR16C LTR ERVL 189 321 -170 1925 186 37 32 chr4 12313727 12314277 -190014070 - MLT2A2 LTR ERVL 0 554 1 278 285 101 13 chr4 12315735 12315893 -190012454 - L3 LINE CR1 -309 1268 1097 2312 242 30 20 chr4 12316105 12316709 -190011638 + MLT1E3 LTR MaLR 7 616 -8 408 294 168 9 chr4 12316853 12317067 -190011280 + MIR SINE MIR 1 248 -14 3759 67 6 2 chr4 12317393 12317887 -190010460 - L1PA7 LINE L1 0 6154 5659 2427 60 10 0 chr4 12317887 12318267 -190010080 + L1P3 LINE L1 5199 5581 -573 1134 325 12 12 chr4 12319451 12319875 -190008472 - LTR16A LTR ERVL 0 450 27 594 261 38 52 chr4 12320290 12320501 -190007846 - MIR SINE MIR -2 260 53 310 289 35 28 chr4 12320559 12320701 -190007646 + MLT1H LTR MaLR 12 154 -395 2424 77 0 3 chr4 12320741 12321052 -190007295 - AluY SINE Alu 0 311 2 25 0 0 0 chr4 12321889 12321914 -190006433 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr4 12322147 12322175 -190006172 + AT_rich Low_complexity Low_complexity 1 28 0 2220 122 6 14 chr4 12322384 12322728 -190005619 - MER1A DNA MER1_type 0 529 189 3512 75 135 170 chr4 12322731 12323692 -190004655 - pTR5 LTR ERV1 0 2438 6 769 185 43 37 chr4 12323722 12323884 -190004463 - MER1A DNA MER1_type -331 196 34 1017 236 9 0 chr4 12324134 12324354 -190003993 - MER58A DNA MER1_type 0 224 3 2147 139 0 0 chr4 12324388 12324697 -190003650 + AluSx SINE Alu 1 309 -3 1625 216 0 0 chr4 12325353 12325635 -190002712 - AluJo SINE Alu -30 282 1 1754 229 79 8 chr4 12325774 12326242 -190002105 - MLT1D LTR MaLR -2 503 3 310 352 20 108 chr4 12326264 12326662 -190001685 + L2 LINE L2 2870 3232 -40 22 56 0 0 chr4 12326691 12326727 -190001620 + AT_rich Low_complexity Low_complexity 1 36 0 278 212 29 123 chr4 12327136 12327306 -190001041 - MLT1L LTR MaLR -221 394 241 446 179 152 13 chr4 12327330 12327481 -190000866 + MER53 DNA DNA 11 182 -7 286 309 121 12 chr4 12327924 12328089 -190000258 + MIR SINE MIR 10 192 -70 446 75 15 0 chr4 12328226 12328293 -190000054 + (TG)n Simple_repeat Simple_repeat 1 68 0 1331 208 53 129 chr4 12328295 12328823 -189999524 - MLT2B3 LTR ERVL -46 508 21 1299 297 81 72 chr4 12328968 12329907 -189998440 + L2 LINE L2 2367 3304 -9 188 371 79 0 chr4 12329967 12330056 -189998291 - MIR SINE MIR -2 260 165 636 328 8 45 chr4 12330110 12330378 -189997969 + MIR SINE MIR 5 262 0 419 273 121 0 chr4 12330384 12330516 -189997831 - MIR SINE MIR -106 156 9 592 345 86 4 chr4 12331157 12331412 -189996935 + L2 LINE L2 2576 2851 -463 391 241 117 29 chr4 12331461 12331598 -189996749 - MIR SINE MIR -105 157 9 243 384 36 14 chr4 12331687 12331825 -189996522 + L2 LINE L2 2911 3051 -262 204 333 23 23 chr4 12332151 12332238 -189996109 - MIR SINE MIR -16 246 160 1173 214 77 14 chr4 12332238 12332523 -189995824 + AluJb SINE Alu 6 308 -4 271 314 76 0 chr4 12332542 12332647 -189995700 - MIR SINE MIR -64 144 32 191 178 0 110 chr4 12332876 12332949 -189995398 - L2 LINE L2 -560 2754 2690 23 0 0 0 chr4 12333205 12333228 -189995119 + AT_rich Low_complexity Low_complexity 1 23 0 269 356 19 0 chr4 12333448 12333552 -189994795 + MIR SINE MIR 20 125 -137 194 263 53 0 chr4 12333588 12333645 -189994702 + MIR SINE MIR 203 262 0 216 0 0 0 chr4 12333747 12333771 -189994576 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 413 284 52 22 chr4 12334062 12334196 -189994151 + MIR SINE MIR 16 153 -109 376 281 42 42 chr4 12335140 12335332 -189993015 + L2 LINE L2 3070 3261 -52 229 261 76 51 chr4 12335876 12336008 -189992339 + LTR33A LTR ERVL 358 496 -27 180 0 0 0 chr4 12336008 12336028 -189992319 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 229 261 76 51 chr4 12336028 12336052 -189992295 + LTR33A LTR ERVL 496 518 -5 222 298 134 68 chr4 12336307 12336599 -189991748 - L2 LINE L2 -459 2855 2545 30 0 0 0 chr4 12337145 12337175 -189991172 + AT_rich Low_complexity Low_complexity 1 30 0 543 305 75 17 chr4 12337300 12337539 -189990808 - MIR SINE MIR 0 262 10 262 309 0 21 chr4 12337618 12337715 -189990632 + MIR SINE MIR 74 168 -94 373 242 47 62 chr4 12338941 12339069 -189989278 - L2 LINE L2 0 3313 3188 774 323 124 68 chr4 12339177 12339944 -189988403 - L2 LINE L2 -356 2958 2149 1525 233 118 29 chr4 12339970 12340404 -189987943 + MLT2B1 LTR ERVL 3 484 -36 204 40 0 0 chr4 12340404 12340429 -189987918 + (TA)n Simple_repeat Simple_repeat 1 25 0 1525 233 118 29 chr4 12340429 12340470 -189987877 + MLT2B1 LTR ERVL 484 520 0 285 315 120 0 chr4 12340476 12340568 -189987779 - MIR SINE MIR -141 121 19 203 224 134 15 chr4 12340908 12340975 -189987372 + L3 LINE CR1 1243 1317 -260 295 357 49 38 chr4 12341721 12341906 -189986441 + MIR SINE MIR 20 206 -56 667 206 44 0 chr4 12342006 12342142 -189986205 - MLT1B LTR MaLR -10 380 239 300 174 14 14 chr4 12342242 12342311 -189986036 - MLT1B LTR MaLR -321 69 1 254 331 0 8 chr4 12342531 12342661 -189985686 + (TG)n Simple_repeat Simple_repeat 2 130 0 1683 162 39 72 chr4 12342893 12343281 -189985066 - THE1C LTR MaLR 0 375 1 6431 164 55 7 chr4 12343281 12344788 -189983559 - MLT1B-int LTR MaLR 0 1580 3 1865 166 27 24 chr4 12344790 12345164 -189983183 - THE1C LTR MaLR 0 375 1 359 357 39 26 chr4 12345176 12345330 -189983017 + MER91A DNA MER1_type 1 156 -40 199 283 0 0 chr4 12346554 12346600 -189981747 - MIR SINE MIR -124 138 93 27 0 0 0 chr4 12347495 12347522 -189980825 + AT_rich Low_complexity Low_complexity 1 27 0 210 71 0 0 chr4 12348166 12348194 -189980153 + (T)n Simple_repeat Simple_repeat 1 28 0 1159 252 22 31 chr4 12348339 12348660 -189979687 + MLT1C LTR MaLR 1 318 -149 1710 226 32 25 chr4 12348660 12349134 -189979213 + L1MA9 LINE L1 5799 6275 -37 214 151 38 38 chr4 12350374 12350427 -189977920 + T-rich Low_complexity Low_complexity 3 55 0 21 0 0 0 chr4 12350467 12350488 -189977859 + AT_rich Low_complexity Low_complexity 1 21 0 3696 207 43 34 chr4 12350538 12352023 -189976324 + L1MA10 LINE L1 4819 6321 -13 270 179 0 0 chr4 12352032 12352088 -189976259 + GA-rich Low_complexity Low_complexity 3 58 0 218 176 20 0 chr4 12352717 12352768 -189975579 + (TA)n Simple_repeat Simple_repeat 2 53 0 855 271 56 68 chr4 12353417 12353812 -189974535 + L2 LINE L2 2916 3305 -8 198 282 89 32 chr4 12353814 12353938 -189974409 - MIR SINE MIR -58 204 74 196 391 109 8 chr4 12354010 12354258 -189974089 + L3 LINE CR1 1277 1549 -28 229 304 70 51 chr4 12354506 12354646 -189973701 - MIR SINE MIR -65 143 5 304 285 98 8 chr4 12355256 12355379 -189972968 - MIR SINE MIR -53 209 76 990 268 51 49 chr4 12358573 12359061 -189969286 - MLT1E3 LTR MaLR 0 624 136 320 334 46 59 chr4 12359062 12359385 -189968962 - L1M4 LINE L1 -1932 4214 3896 321 247 165 99 chr4 12359701 12359825 -189968522 - L1M4 LINE L1 -2688 3458 3344 479 0 0 0 chr4 12359825 12359882 -189968465 - L1PA3 LINE L1 -3 6152 6096 321 247 165 99 chr4 12359882 12359931 -189968416 - L1M4 LINE L1 -2802 3344 3300 2256 80 0 7 chr4 12359931 12360217 -189968130 - AluY SINE Alu -9 302 19 321 247 165 99 chr4 12360217 12360394 -189967953 - L1M4 LINE L1 -2846 3300 3084 312 188 0 0 chr4 12360471 12360535 -189967812 + CT-rich Low_complexity Low_complexity 3 66 0 341 317 16 8 chr4 12360594 12360717 -189967630 - L1M4 LINE L1 -3161 2985 2862 225 309 0 0 chr4 12360721 12360802 -189967545 - L1M4 LINE L1 -3328 2818 2738 215 260 13 26 chr4 12360867 12360896 -189967451 + CT-rich Low_complexity Low_complexity 1 29 -47 2412 160 7 47 chr4 12360896 12361340 -189967007 - MSTB LTR MaLR 0 426 1 215 260 13 26 chr4 12361340 12361387 -189966960 + CT-rich Low_complexity Low_complexity 29 76 0 1906 340 52 11 chr4 12361545 12362293 -189966054 + L1MA7 LINE L1 1430 2208 -5288 2064 261 79 26 chr4 12362311 12362650 -189965697 + L1MA7 LINE L1 2260 2579 -4986 1976 175 0 0 chr4 12362650 12362958 -189965389 + AluSx SINE Alu 1 308 -4 2064 261 79 26 chr4 12362958 12364333 -189964014 + L1MA7 LINE L1 2579 3732 -3833 * 3880 196 41 13 chr4 12364318 12365663 -189962684 + L1MA7 LINE L1 6199 7699 -11 27 96 0 0 chr4 12365740 12365823 -189962524 + AT_rich Low_complexity Low_complexity 1 83 0 394 382 36 5 chr4 12365874 12366094 -189962253 + MIR SINE MIR 15 241 -21 262 362 5 55 chr4 12366187 12366386 -189961961 - MIR SINE MIR -71 191 3 258 32 0 0 chr4 12366780 12366811 -189961536 + (CA)n Simple_repeat Simple_repeat 2 32 0 728 283 15 20 chr4 12367198 12367396 -189960951 + MER58A DNA MER1_type 9 205 -19 197 333 0 0 chr4 12367415 12367469 -189960878 - MIR SINE MIR -74 134 81 209 271 97 56 chr4 12368210 12368354 -189959993 + MIR SINE MIR 57 206 -56 324 70 0 0 chr4 12368408 12368451 -189959896 + (ATG)n Simple_repeat Simple_repeat 1 43 0 273 269 26 0 chr4 12368489 12368567 -189959780 + MER94 DNA DNA 39 118 -16 1582 35 0 20 chr4 12368867 12369067 -189959280 - AluY SINE Alu -12 299 104 312 244 0 0 chr4 12369389 12369479 -189958868 + GA-rich Low_complexity Low_complexity 5 94 0 180 0 0 0 chr4 12370256 12370276 -189958071 + (T)n Simple_repeat Simple_repeat 1 20 0 186 288 195 34 chr4 12370577 12370695 -189957652 + MIR SINE MIR 20 156 -106 186 103 0 0 chr4 12371838 12371867 -189956480 + (TA)n Simple_repeat Simple_repeat 1 29 0 372 243 5 146 chr4 12373036 12373221 -189955126 + LTR67 LTR ERVL 353 511 -46 1536 212 8 69 chr4 12373234 12373611 -189954736 + MLT1A1 LTR MaLR 1 354 -11 330 247 104 32 chr4 12373766 12373920 -189954427 - L2 LINE L2 -6 3307 3143 743 275 51 18 chr4 12374154 12374488 -189953859 - L1M4 LINE L1 -2216 3930 3586 836 104 0 0 chr4 12374741 12374866 -189953481 + AluY SINE Alu 187 311 0 1714 194 41 19 chr4 12375214 12375581 -189952766 - THE1C LTR MaLR 0 375 1 9093 145 12 35 chr4 12375581 12377194 -189951153 - THE1C-int LTR MaLR 0 1580 4 1701 182 40 37 chr4 12377197 12377571 -189950776 - THE1C LTR MaLR 0 375 1 322 327 67 0 chr4 12377724 12377828 -189950519 - MER81 DNA DNA -3 111 1 1312 158 36 9 chr4 12377850 12378072 -189950275 - MER30 DNA MER1_type 0 230 3 183 80 0 0 chr4 12378543 12378568 -189949779 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 227 287 57 100 chr4 12378584 12378822 -189949525 + MIR SINE MIR 9 236 -26 21 0 0 0 chr4 12379139 12379160 -189949187 + AT_rich Low_complexity Low_complexity 1 21 0 1487 204 22 44 chr4 12379504 12379866 -189948481 + MLT1A1 LTR MaLR 12 365 0 301 318 13 54 chr4 12379960 12380113 -189948234 + MIR SINE MIR 47 146 -62 391 234 39 55 chr4 12380273 12380401 -189947946 + MIR SINE MIR 31 156 -106 252 342 0 8 chr4 12380433 12380550 -189947797 + MIR SINE MIR 146 261 -1 23 0 0 0 chr4 12380607 12380630 -189947717 + AT_rich Low_complexity Low_complexity 1 23 0 210 250 0 0 chr4 12380732 12380836 -189947511 + (CA)n Simple_repeat Simple_repeat 1 104 0 206 305 17 17 chr4 12381019 12381078 -189947269 + MIR SINE MIR 95 153 -55 * 214 214 0 0 chr4 12381073 12381115 -189947232 + L2 LINE L2 3267 3308 -5 271 320 72 24 chr4 12381377 12381502 -189946845 - L2 LINE L2 0 3272 3142 225 184 0 0 chr4 12381766 12381804 -189946543 - MLT1I LTR MaLR -274 135 98 255 302 0 0 chr4 12382118 12382181 -189946166 + L2 LINE L2 3210 3272 0 280 292 138 23 chr4 12382302 12382432 -189945915 + L2 LINE L2 3118 3262 -10 481 342 53 25 chr4 12382645 12383224 -189945123 + L1ME2 LINE L1 5263 5867 -297 215 305 150 49 chr4 12384001 12384230 -189944117 + MIR3 SINE MIR 5 262 0 1757 162 0 4 chr4 12385700 12385999 -189942348 + AluSx SINE Alu 14 311 0 1000 251 69 69 chr4 12386093 12386483 -189941864 + MLT1B LTR MaLR 1 390 0 2313 240 47 39 chr4 12386484 12387250 -189941097 - L1ME2 LINE L1 -22 6142 5371 906 290 116 28 chr4 12387266 12388110 -189940237 - L1ME2 LINE L1 -845 5301 4384 2338 272 89 35 chr4 12388233 12389536 -189938811 - L1ME2 LINE L1 -2098 4048 2675 33 0 0 0 chr4 12389914 12389947 -189938400 + AT_rich Low_complexity Low_complexity 1 33 0 323 325 77 36 chr4 12390209 12390403 -189937944 - MIR SINE MIR 0 262 61 188 194 28 0 chr4 12390400 12390436 -189937911 + MER5A DNA MER1_type 152 188 -1 * 1175 258 185 6 chr4 12391264 12391751 -189936596 - MLT1F1 LTR MaLR 0 567 1 827 264 95 20 chr4 12392004 12392352 -189935995 - L1ME4a LINE L1 -15 6106 5733 601 200 32 0 chr4 12392840 12392965 -189935382 + MER94 DNA DNA 1 129 -5 289 185 41 14 chr4 12393213 12393359 -189934988 + (TA)n Simple_repeat Simple_repeat 2 151 0 648 355 47 17 chr4 12393769 12394068 -189934279 + L1M2 LINE L1 395 702 -6147 3347 238 52 46 chr4 12394296 12395851 -189932496 + L1M2 LINE L1 1345 2907 -3941 2866 10 0 0 chr4 12395851 12396161 -189932186 - AluY SINE Alu -1 310 1 3347 238 52 46 chr4 12396161 12396385 -189931962 + L1M2 LINE L1 2907 3128 -3720 231 71 48 0 chr4 12396437 12396479 -189931868 - LTR66 LTR ERVL -169 441 398 237 65 0 0 chr4 12396479 12396510 -189931837 + (TA)n Simple_repeat Simple_repeat 2 32 0 3055 202 17 17 chr4 12396544 12397633 -189930714 + L1M2 LINE L1 5287 6370 -632 2432 194 11 11 chr4 12397643 12398091 -189930256 + L1MA3 LINE L1 16 463 -7102 608 140 11 0 chr4 12398093 12398186 -189930161 - AluSg SINE Alu -216 94 1 806 154 12 12 chr4 12398186 12398348 -189929999 + L1MA3 LINE L1 5631 5792 -1773 * 895 126 12 18 chr4 12398343 12398510 -189929837 + L1MA3 LINE L1 7175 7340 -384 22 0 0 0 chr4 12398895 12398917 -189929430 + AT_rich Low_complexity Low_complexity 1 22 0 747 303 19 0 chr4 12399421 12399632 -189928715 + MER58A DNA MER1_type 10 224 0 278 335 120 11 chr4 12399632 12399823 -189928524 - MIR SINE MIR -46 216 5 597 163 59 20 chr4 12399838 12399991 -189928356 - L1MB8 LINE L1 -6 7193 7035 859 225 58 8 chr4 12400001 12400290 -189928057 - L1MB8 LINE L1 -660 6539 6239 7711 263 54 10 chr4 12400378 12401083 -189927264 - L1MB8 LINE L1 -1101 6066 5394 2309 116 38 30 chr4 12401083 12401455 -189926892 - THE1C LTR MaLR 0 375 1 7711 263 54 10 chr4 12401455 12401750 -189926597 - L1MB8 LINE L1 -1773 5394 5114 360 0 0 0 chr4 12401750 12401790 -189926557 + (TA)n Simple_repeat Simple_repeat 1 40 0 7711 263 54 10 chr4 12401790 12403708 -189924639 - L1MB8 LINE L1 -2053 5114 3054 5845 257 42 43 chr4 12404067 12406465 -189921882 - L1M4c LINE L1 -4436 2702 192 1428 189 3 6 chr4 12406565 12406877 -189921470 - L1P LINE L1 -4612 1534 1224 4041 307 96 14 chr4 12406885 12408358 -189919989 - L1MB8 LINE L1 -5517 1651 48 297 0 0 0 chr4 12408358 12408391 -189919956 + (TG)n Simple_repeat Simple_repeat 2 34 0 4041 307 96 14 chr4 12408391 12408431 -189919916 - L1MB8 LINE L1 -7120 48 13 2159 124 0 6 chr4 12410454 12410768 -189917579 - AluSq SINE Alu -1 312 1 367 309 76 57 chr4 12411743 12412422 -189915925 + L1MEc LINE L1 702 1403 -4993 2018 155 25 38 chr4 12412422 12412790 -189915557 + THE1B LTR MaLR 2 364 0 367 309 76 57 chr4 12412790 12412975 -189915372 + L1MEc LINE L1 1403 1583 -4813 1641 255 49 7 chr4 12412980 12413412 -189914935 - MLT1D LTR MaLR -2 503 54 304 350 45 0 chr4 12413413 12413570 -189914777 - HERVL LTR ERVL -3238 2416 2253 1488 246 23 11 chr4 12413589 12413939 -189914408 - MLT1A1 LTR MaLR -9 356 3 1728 293 29 55 chr4 12413940 12414528 -189913819 - HERVL LTR ERVL -2753 2260 1726 2253 116 0 0 chr4 12414528 12414830 -189913517 - AluSc SINE Alu -7 302 1 1728 293 29 55 chr4 12414830 12415119 -189913228 - HERVL LTR ERVL -3287 1726 1431 580 328 47 19 chr4 12415625 12415881 -189912466 - LTR16A LTR ERVL -78 372 110 698 244 48 26 chr4 12415975 12416246 -189912101 + L1ME2 LINE L1 5333 5609 -555 409 238 20 10 chr4 12416250 12416351 -189911996 - MER8 DNA MER2_type 0 239 138 1475 264 14 68 chr4 12416397 12416970 -189911377 + L1ME2 LINE L1 5615 6156 -8 576 292 117 42 chr4 12417526 12417766 -189910581 + MIR SINE MIR 5 262 0 283 255 28 66 chr4 12418253 12418359 -189909988 + MIR3 SINE MIR 69 170 -38 291 320 112 15 chr4 12418606 12418803 -189909544 + MIR SINE MIR 13 228 -34 730 290 108 5 chr4 12419292 12419506 -189908841 - MIR SINE MIR -10 252 17 403 362 34 37 chr4 12419822 12420173 -189908174 + L1MD2 LINE L1 4487 4836 -1310 1252 210 6 72 chr4 12420324 12420657 -189907690 - AluJo SINE Alu -1 311 1 2265 119 24 29 chr4 12420927 12421304 -189907043 - THE1C LTR MaLR 0 375 1 227 273 51 100 chr4 12421356 12421667 -189906680 + L1MD2 LINE L1 5314 5609 -2199 9059 36 2 1 chr4 12421691 12422761 -189905586 + MER11C LTR ERVK 1 1071 0 279 313 52 37 chr4 12422930 12423064 -189905283 - MIR SINE MIR -104 158 23 473 263 165 64 chr4 12423123 12423420 -189904927 - MLT1H LTR MaLR -2 547 221 667 225 78 0 chr4 12423686 12423828 -189904519 + MER58B DNA MER1_type 185 337 -4 319 294 75 41 chr4 12424747 12424893 -189903454 + MIR SINE MIR 41 191 -71 219 69 0 0 chr4 12425187 12425216 -189903131 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 283 309 41 10 chr4 12426122 12426219 -189902128 + MER94 DNA DNA 5 104 -30 425 251 120 24 chr4 12426394 12426561 -189901786 - LTR33A LTR ERVL -15 508 326 248 342 40 27 chr4 12426697 12426846 -189901501 - LTR33 LTR ERVL -322 199 49 227 353 90 8 chr4 12428498 12428631 -189899716 + MIR3 SINE MIR 55 198 -10 237 65 0 0 chr4 12428654 12428682 -189899665 + (TG)n Simple_repeat Simple_repeat 1 59 0 237 65 0 0 chr4 12428682 12428713 -189899634 + (TG)n Simple_repeat Simple_repeat 2 32 0 890 212 35 69 chr4 12428724 12429012 -189899335 + L1MD2 LINE L1 6072 6349 -10 1108 246 78 89 chr4 12429016 12429867 -189898480 + L1M4 LINE L1 4255 5095 -1051 213 65 0 0 chr4 12429887 12429918 -189898429 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1902 202 28 4 chr4 12430089 12430550 -189897797 + L1 LINE L1 4021 4492 -1654 862 355 27 23 chr4 12430565 12431005 -189897342 + L1M3a LINE L1 11 452 -5503 233 382 42 0 chr4 12431134 12431278 -189897069 + L1M3a LINE L1 305 454 -5501 233 325 40 16 chr4 12431737 12431863 -189896484 + L1M3a LINE L1 547 675 -5280 278 368 28 0 chr4 12431880 12432024 -189896323 + L1M3a LINE L1 552 699 -5256 1531 290 70 34 chr4 12432167 12433710 -189894637 + L1MA7 LINE L1 245 1591 -4443 1097 241 122 6 chr4 12433710 12434062 -189894285 + MSTD LTR MaLR 4 396 0 1531 290 70 34 chr4 12434062 12434885 -189893462 + L1MA7 LINE L1 1591 2384 -3650 890 258 0 26 chr4 12434900 12435133 -189893214 - MER46A DNA MER2_type -9 227 1 1963 265 36 8 chr4 12435134 12435746 -189892601 + L1MA7 LINE L1 2384 3012 -3022 * 9220 136 38 10 chr4 12435740 12437181 -189891166 + THE1C-int LTR MaLR 99 1579 -1 1781 176 24 21 chr4 12437182 12437556 -189890791 + THE1C LTR MaLR 1 375 0 738 250 60 49 chr4 12437556 12437745 -189890602 + L1MA7 LINE L1 3056 3242 -2792 2867 136 64 50 chr4 12437745 12438190 -189890157 + LTR24C LTR ERV1 1 459 -176 2226 100 17 0 chr4 12438190 12438489 -189889858 + AluSp SINE Alu 1 304 -9 2867 136 64 50 chr4 12438489 12438668 -189889679 + LTR24C LTR ERV1 459 634 -1 738 250 60 49 chr4 12438668 12438930 -189889417 + L1MA7 LINE L1 3242 3549 -2485 3594 105 57 37 chr4 12438932 12439893 -189888454 - MER11A LTR ERVK -4 1067 1 5416 220 37 15 chr4 12439893 12441402 -189886945 + L1MA7 LINE L1 3541 5174 -860 1262 200 34 0 chr4 12441404 12441639 -189886708 - MSTB1 LTR MaLR 0 432 190 1329 165 39 16 chr4 12441656 12441911 -189886436 - MSTB1 LTR MaLR -171 261 1 5329 223 65 87 chr4 12441911 12443258 -189885089 - MSTB1-int LTR MaLR 0 1651 346 1781 73 13 4 chr4 12443258 12443492 -189884855 - AluY SINE Alu -13 298 63 5329 223 65 87 chr4 12443492 12443827 -189884520 - MSTB1-int LTR MaLR -1305 346 5 2111 157 89 10 chr4 12443836 12444231 -189884116 - MSTB1 LTR MaLR -6 426 1 4314 208 24 14 chr4 12444232 12445229 -189883118 + L1MA7 LINE L1 5173 6179 0 23 0 0 0 chr4 12445220 12445243 -189883104 + AT_rich Low_complexity Low_complexity 1 23 0 * 3341 214 31 41 chr4 12445245 12445523 -189882824 + L1MB2 LINE L1 4477 4756 -1415 1417 257 16 13 chr4 12445523 12445896 -189882451 + MLT1A2 LTR MaLR 1 374 0 3341 214 31 41 chr4 12445896 12446787 -189881560 + L1MB2 LINE L1 4756 5654 -517 2447 62 10 3 chr4 12446787 12447091 -189881256 + AluY SINE Alu 1 306 -5 3341 214 31 41 chr4 12447091 12447606 -189880741 + L1MB2 LINE L1 5654 6119 -52 2075 135 0 0 chr4 12447606 12447902 -189880445 + AluSq SINE Alu 1 296 -17 3341 214 31 41 chr4 12447902 12447955 -189880392 + L1MB2 LINE L1 6119 6171 0 523 231 55 41 chr4 12447948 12448232 -189880115 + L1ME LINE L1 5177 5466 -698 * 205 329 208 7 chr4 12448756 12448905 -189879442 - MIR SINE MIR -32 230 52 2926 201 131 1 chr4 12449491 12450238 -189878109 - L1MB7 LINE L1 -19 6165 5322 1523 210 31 42 chr4 12450245 12450630 -189877717 - L1MB5 LINE L1 -13 6161 5781 453 286 0 6 chr4 12450730 12450905 -189877442 - L1MB7 LINE L1 -873 5273 5100 1649 264 93 26 chr4 12450920 12451686 -189876661 - L1MB7 LINE L1 -1152 4994 4178 244 198 12 25 chr4 12451722 12451803 -189876544 + CT-rich Low_complexity Low_complexity 1 80 0 203 325 25 38 chr4 12452468 12452548 -189875799 - MIR3 SINE MIR -6 202 124 21 0 0 0 chr4 12453377 12453398 -189874949 + AT_rich Low_complexity Low_complexity 1 21 0 366 304 224 34 chr4 12453699 12454282 -189874065 + L2 LINE L2 2587 3283 -30 2050 126 13 13 chr4 12454300 12454618 -189873729 + THE1C LTR MaLR 58 375 0 1600 166 62 3 chr4 12454740 12455030 -189873317 - AluSx SINE Alu -5 307 1 221 214 29 0 chr4 12455200 12455270 -189873077 + (TA)n Simple_repeat Simple_repeat 1 72 0 389 93 0 0 chr4 12455381 12455435 -189872912 + MLT2D LTR ERVL 1 54 -360 28 29 0 0 chr4 12455435 12455470 -189872877 + AT_rich Low_complexity Low_complexity 1 35 0 229 212 0 0 chr4 12455485 12455551 -189872796 - L1MC4 LINE L1 -1340 6702 6637 873 173 97 0 chr4 12455654 12455839 -189872508 - MLT2D LTR ERVL -211 203 1 22 35 0 0 chr4 12456368 12456397 -189871950 + AT_rich Low_complexity Low_complexity 1 29 0 1258 222 21 31 chr4 12457248 12457631 -189870716 - Charlie4a DNA MER1_type -54 454 76 22 0 0 0 chr4 12457631 12457653 -189870694 + AT_rich Low_complexity Low_complexity 1 22 0 2903 278 54 48 chr4 12457769 12459868 -189868479 + L1M4c LINE L1 1 1799 -4411 303 323 70 21 chr4 12459896 12459990 -189868357 + L1M4c LINE L1 1831 1919 -4293 2159 127 0 0 chr4 12459990 12460297 -189868050 + AluSc SINE Alu 1 307 -2 303 323 70 21 chr4 12460297 12460388 -189867959 + L1M4c LINE L1 1919 2025 -4187 485 316 7 7 chr4 12460450 12460589 -189867758 + L2 LINE L2 3175 3313 0 272 358 37 47 chr4 12460598 12460897 -189867450 - L2 LINE L2 -710 2604 2309 303 192 0 0 chr4 12460937 12461015 -189867332 + GA-rich Low_complexity Low_complexity 1 78 0 284 375 69 0 chr4 12461238 12461398 -189866949 - L2 LINE L2 -1285 2029 1859 7293 43 0 2 chr4 12461671 12463048 -189865299 + L1PA4 LINE L1 4778 6153 -2 272 315 101 22 chr4 12463502 12463680 -189864667 + L2 LINE L2 3112 3303 -10 244 308 20 25 chr4 12463967 12464165 -189864182 + L1M4c LINE L1 3348 3544 -2666 492 324 68 56 chr4 12465342 12465990 -189862357 + L1M4 LINE L1 3295 3950 -2196 189 333 75 21 chr4 12466128 12466221 -189862126 + MIR SINE MIR 18 115 -147 2539 65 3 0 chr4 12466717 12467026 -189861321 - AluY SINE Alu -1 310 1 330 316 11 0 chr4 12467053 12467148 -189861199 - MIR SINE MIR -73 135 40 1798 212 64 25 chr4 12467555 12467994 -189860353 + MLT1C LTR MaLR 12 467 0 2080 113 0 0 chr4 12468535 12468809 -189859538 - AluSq SINE Alu -17 296 23 205 327 18 62 chr4 12468848 12468961 -189859386 - L2 LINE L2 -502 2812 2705 669 131 11 148 chr4 12469096 12469279 -189859068 - AluJb SINE Alu -1 311 154 2129 56 7 0 chr4 12469382 12469652 -189858695 - AluY SINE Alu -39 272 1 21 0 0 0 chr4 12470173 12470194 -189858153 + AT_rich Low_complexity Low_complexity 1 21 0 222 328 15 60 chr4 12470731 12470865 -189857482 + MER5A DNA MER1_type 8 135 -54 2028 64 64 0 chr4 12471318 12471624 -189856723 - AluY SINE Alu 0 323 1 184 396 10 0 chr4 12471642 12471743 -189856604 - MIR SINE MIR -128 134 33 207 293 102 48 chr4 12472161 12472328 -189856019 - MIR SINE MIR -1 261 86 242 347 56 7 chr4 12473016 12473160 -189855187 - MIR SINE MIR -111 151 1 273 297 78 39 chr4 12474288 12474416 -189853931 + L2 LINE L2 3165 3297 -16 25 31 0 0 chr4 12475465 12475497 -189852850 + AT_rich Low_complexity Low_complexity 1 32 0 285 337 60 12 chr4 12476074 12476240 -189852107 + MIR SINE MIR 47 220 -42 2928 101 21 0 chr4 12476567 12477001 -189851346 - L1PA13 LINE L1 -4 6159 5717 786 199 4 132 chr4 12477876 12478127 -189850220 + MER20 DNA MER1_type 1 219 0 221 290 16 0 chr4 12478429 12478491 -189849856 - MIR SINE MIR -42 220 158 1020 268 57 66 chr4 12478491 12479040 -189849307 - MLT1H1 LTR MaLR 0 555 12 686 184 7 34 chr4 12479895 12480042 -189848305 - FLAM_C SINE Alu 0 143 1 189 0 0 0 chr4 12480309 12480330 -189848017 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2225 128 22 8 chr4 12480422 12480788 -189847559 + THE1C LTR MaLR 1 371 -4 9308 138 49 19 chr4 12480792 12482326 -189846021 + THE1C-int LTR MaLR 1 1580 0 1880 169 16 39 chr4 12482326 12482710 -189845637 + THE1C LTR MaLR 1 375 0 958 49 81 0 chr4 12484012 12484135 -189844212 + MER85 DNA T2_type 1 133 -6 230 191 16 79 chr4 12484101 12484164 -189844183 - MER85 DNA T2_type -6 133 75 * 295 150 3 60 chr4 12484507 12484574 -189843773 + L1M1 LINE L1 5525 5588 -714 1749 183 3 3 chr4 12485848 12486133 -189842214 - AluJb SINE Alu -27 285 1 34 65 0 0 chr4 12487066 12487128 -189841219 + AT_rich Low_complexity Low_complexity 1 62 0 523 343 121 41 chr4 12487240 12487555 -189840792 + LTR16C LTR ERVL 128 467 -24 488 233 72 76 chr4 12487720 12487982 -189840365 - L1ME3A LINE L1 -230 5940 5680 287 206 29 15 chr4 12488073 12488141 -189840206 - MLT1I LTR MaLR -271 138 70 2165 105 10 0 chr4 12488370 12488665 -189839682 - AluSg SINE Alu -12 298 1 21 0 0 0 chr4 12488705 12488726 -189839621 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr4 12488765 12488794 -189839553 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 239 330 79 32 chr4 12489170 12489449 -189838898 + L1MEd LINE L1 569 860 -5259 202 314 101 44 chr4 12490357 12490516 -189837831 - MIR SINE MIR -1 261 94 426 156 0 0 chr4 12490547 12490624 -189837723 - L1PA16 LINE L1 -4 6162 6086 22 0 0 0 chr4 12490795 12490817 -189837530 + AT_rich Low_complexity Low_complexity 1 22 0 206 161 0 36 chr4 12491245 12491301 -189837046 + (CATA)n Simple_repeat Simple_repeat 2 55 0 2274 172 54 5 chr4 12491663 12492069 -189836278 + MSTB LTR MaLR 1 426 0 8178 178 60 5 chr4 12492069 12493599 -189834748 + MSTB-int LTR MaLR 1 1614 -37 542 189 0 0 chr4 12493616 12493711 -189834636 + MSTB LTR MaLR 1 95 -331 2871 122 24 2 chr4 12493715 12494166 -189834181 + L1PA8 LINE L1 5712 6172 0 275 325 20 60 chr4 12494352 12494503 -189833844 + MIR SINE MIR 114 258 -4 180 0 0 0 chr4 12494860 12494880 -189833467 + (T)n Simple_repeat Simple_repeat 1 20 0 259 344 0 0 chr4 12495265 12495355 -189832992 + MIR SINE MIR 118 207 -55 1753 260 59 36 chr4 12495467 12496097 -189832250 - L1MC4 LINE L1 -140 7902 7259 1261 255 67 36 chr4 12496106 12496658 -189831689 - L1MC4 LINE L1 -809 6999 6452 1789 188 8 44 chr4 12497649 12498439 -189829908 - L1MB1 LINE L1 -532 5636 4880 329 169 17 0 chr4 12498437 12498496 -189829851 + L1MB1 LINE L1 5660 5719 -449 * 630 109 0 0 chr4 12498497 12498589 -189829758 - AluSc SINE Alu -217 92 1 1826 181 48 5 chr4 12498590 12498961 -189829386 + L1MB1 LINE L1 5781 6167 -1 190 372 0 35 chr4 12498983 12499069 -189829278 + MIR SINE MIR 19 101 -107 323 348 57 17 chr4 12499227 12499457 -189828890 + MIR SINE MIR 3 241 -21 243 374 65 23 chr4 12500428 12500642 -189827705 + L2 LINE L2 2384 2606 -708 584 240 35 35 chr4 12500885 12501085 -189827262 + MER3 DNA MER1_type 10 209 0 301 262 56 40 chr4 12501208 12501334 -189827013 + MLT1F1 LTR MaLR 440 567 0 211 338 60 92 chr4 12501581 12501862 -189826485 + L2 LINE L2 3000 3271 -1 216 337 178 0 chr4 12502090 12502191 -189826156 + MIR SINE MIR 20 138 -124 298 250 43 11 chr4 12502852 12502944 -189825403 + MIR SINE MIR 112 206 -56 1714 173 94 0 chr4 12503293 12503611 -189824736 + MER7A DNA MER2_type 1 346 0 7436 31 1 0 chr4 12504080 12504995 -189823352 + L1PA4 LINE L1 5254 6169 0 34 79 0 0 chr4 12505221 12505297 -189823050 + AT_rich Low_complexity Low_complexity 1 76 0 276 339 62 27 chr4 12506295 12506407 -189821940 + L2 LINE L2 3137 3252 -20 196 289 19 0 chr4 12506526 12506578 -189821769 + L2 LINE L2 3246 3298 -15 34 24 0 0 chr4 12506578 12506619 -189821728 + AT_rich Low_complexity Low_complexity 1 41 0 2051 62 106 0 chr4 12507149 12507424 -189820923 - AluY SINE Alu -7 304 1 245 288 0 12 chr4 12507599 12507679 -189820668 + (TA)n Simple_repeat Simple_repeat 2 80 0 231 36 0 0 chr4 12507679 12507707 -189820640 + (CA)n Simple_repeat Simple_repeat 2 29 0 1002 177 94 0 chr4 12508127 12508381 -189819966 - L1MA8 LINE L1 -1 6290 6013 291 331 73 8 chr4 12509046 12509170 -189819177 + MIR3 SINE MIR 45 176 -32 185 196 22 0 chr4 12509579 12509625 -189818722 + GA-rich Low_complexity Low_complexity 2 48 0 390 244 0 0 chr4 12510061 12510151 -189818196 + FLAM_A SINE Alu 44 133 0 304 412 10 20 chr4 12510224 12510428 -189817919 - L2 LINE L2 -260 3053 2852 760 178 8 0 chr4 12511242 12511371 -189816976 + MLT1D LTR MaLR 1 130 -375 455 298 18 9 chr4 12513377 12513491 -189814856 + L2 LINE L2 3182 3296 -17 233 320 48 40 chr4 12513600 12513725 -189814622 + MIR SINE MIR 16 141 -67 383 113 28 28 chr4 12513753 12513824 -189814523 + AluSc SINE Alu 224 294 -5 298 323 0 46 chr4 12513868 12513998 -189814349 + MIR SINE MIR 89 212 -50 253 387 54 0 chr4 12514190 12514301 -189814046 + L2 LINE L2 3152 3268 -4 25 18 0 73 chr4 12514339 12514394 -189813953 + AT_rich Low_complexity Low_complexity 1 51 0 1750 166 27 6 chr4 12515288 12515620 -189812727 - L1MA2 LINE L1 0 6304 5966 283 286 50 8 chr4 12516193 12516312 -189812035 + LTR67 LTR ERVL 428 551 -6 1104 158 11 16 chr4 12516460 12516650 -189811697 - AluJb SINE Alu -12 300 112 223 360 13 0 chr4 12517164 12517239 -189811108 - L2 LINE L2 -13 3259 3184 369 0 0 0 chr4 12517717 12517758 -189810589 + (TG)n Simple_repeat Simple_repeat 2 42 0 476 290 88 42 chr4 12517922 12518139 -189810208 - MIR SINE MIR -14 248 22 199 310 109 52 chr4 12521220 12521394 -189806953 - L3 LINE CR1 -40 1537 1354 21 0 0 0 chr4 12521502 12521523 -189806824 + AT_rich Low_complexity Low_complexity 1 21 0 300 111 0 0 chr4 12521523 12521568 -189806779 + (CA)n Simple_repeat Simple_repeat 2 46 0 2154 98 11 3 chr4 12521574 12521859 -189806488 - AluSq SINE Alu -26 287 1 1088 229 54 37 chr4 12524199 12524473 -189803874 - AluJo SINE Alu -8 304 23 2214 138 28 6 chr4 12524473 12524829 -189803518 - THE1B LTR MaLR 0 364 1 1088 229 54 37 chr4 12524829 12524851 -189803496 - AluJo SINE Alu -289 23 3 339 302 127 38 chr4 12524858 12525070 -189803277 - MIR SINE MIR -11 251 21 457 340 31 5 chr4 12525165 12525356 -189802991 + MIR SINE MIR 6 201 -61 919 128 47 14 chr4 12525482 12525630 -189802717 - FRAM SINE Alu -12 164 12 187 342 155 19 chr4 12525884 12526039 -189802308 + MIR SINE MIR 1 176 -86 181 336 115 0 chr4 12526035 12526139 -189802208 - MIR SINE MIR -105 157 42 * 1674 180 66 6 chr4 12526189 12526555 -189801792 - L1MB4 LINE L1 -6 6174 5787 207 0 0 0 chr4 12526926 12526949 -189801398 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1751 169 36 0 chr4 12526951 12527229 -189801118 - AluJb SINE Alu -23 289 2 228 330 20 20 chr4 12527252 12527352 -189800995 + MIR3 SINE MIR 92 191 -17 222 301 158 60 chr4 12527582 12527765 -189800582 - MIR SINE MIR -50 212 12 194 268 18 18 chr4 12527989 12528045 -189800302 - L2 LINE L2 -93 3220 3165 334 295 101 53 chr4 12529674 12529881 -189798466 - MIR SINE MIR 0 262 46 294 295 42 0 chr4 12530372 12530467 -189797880 - MER67C LTR ERV1 -367 343 245 297 331 58 16 chr4 12530509 12530630 -189797717 + MIR SINE MIR 91 216 -46 198 351 53 30 chr4 12531331 12531462 -189796885 + MER5A DNA MER1_type 55 188 -1 43615 42 3 1 chr4 12531561 12537705 -189790642 + L1PA3 LINE L1 2 6155 0 281 315 25 26 chr4 12538481 12538708 -189789639 - MER67A LTR ERV1 0 543 282 * 1138 275 81 16 chr4 12538689 12539178 -189789169 - MER67B LTR ERV1 -269 392 1 322 308 55 20 chr4 12539403 12539549 -189788798 - MIR SINE MIR -56 206 56 504 255 0 50 chr4 12540568 12540709 -189787638 - MER5A DNA MER1_type -55 134 1 369 279 228 0 chr4 12540738 12540874 -189787473 + MER5A DNA MER1_type 22 188 -1 306 295 35 4 chr4 12542743 12542865 -189785482 + MER5A DNA MER1_type 14 128 -50 5000 150 21 9 chr4 12543041 12543956 -189784391 + L1PA15 LINE L1 5235 6164 -1 230 386 70 0 chr4 12544002 12544160 -189784187 + MIR SINE MIR 30 198 -64 400 370 117 9 chr4 12544281 12544670 -189783677 + L2 LINE L2 2716 3149 -164 263 222 42 0 chr4 12544670 12544742 -189783605 - LTR33A LTR ERVL -2 521 447 406 266 65 65 chr4 12545054 12545193 -189783154 + L2 LINE L2 3175 3313 0 312 313 38 30 chr4 12545397 12545528 -189782819 + MIR3 SINE MIR 23 154 -54 225 276 0 58 chr4 12545590 12545677 -189782670 - L2 LINE L2 0 3272 3191 237 65 0 0 chr4 12546034 12546065 -189782282 + (TG)n Simple_repeat Simple_repeat 2 32 0 594 320 35 27 chr4 12546067 12546323 -189782024 + MIR SINE MIR 5 262 0 492 297 19 7 chr4 12546710 12546865 -189781482 - MIR3 SINE MIR -29 179 23 270 193 0 0 chr4 12547377 12547434 -189780913 + (TG)n Simple_repeat Simple_repeat 2 58 0 1098 185 0 0 chr4 12547774 12547952 -189780395 - AluJb SINE Alu 0 312 135 1840 272 87 10 chr4 12548044 12548639 -189779708 - L1ME1 LINE L1 -27 6139 5499 1121 259 34 37 chr4 12548641 12548962 -189779385 - MLT1A1 LTR MaLR -38 327 8 695 239 157 28 chr4 12549053 12549442 -189778905 - L1ME1 LINE L1 -745 5401 4963 414 115 63 35 chr4 12549505 12549679 -189778668 + (CATAT)n Simple_repeat Simple_repeat 2 180 0 439 116 85 21 chr4 12550124 12550609 -189777738 + (CATAT)n Simple_repeat Simple_repeat 1 516 0 416 63 21 95 chr4 12550578 12550768 -189777579 + (TA)n Simple_repeat Simple_repeat 2 177 0 * 347 51 15 113 chr4 12550785 12550980 -189777367 + (TA)n Simple_repeat Simple_repeat 2 177 0 372 167 70 19 chr4 12550986 12551192 -189777155 + (CATAT)n Simple_repeat Simple_repeat 1 216 0 324 132 79 40 chr4 12551546 12551698 -189776649 + (CATAT)n Simple_repeat Simple_repeat 3 160 0 381 59 21 106 chr4 12551703 12552051 -189776296 + (TA)n Simple_repeat Simple_repeat 1 318 0 317 271 156 8 chr4 12552065 12552103 -189776244 - L1ME1 LINE L1 -1941 4205 4174 180 0 0 0 chr4 12552103 12552123 -189776224 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 317 271 156 8 chr4 12552123 12552206 -189776141 - L1ME1 LINE L1 -1972 4174 4066 991 287 77 58 chr4 12552237 12552280 -189776067 - L1ME1 LINE L1 -3139 3007 2966 432 82 0 0 chr4 12552280 12552341 -189776006 + (TA)n Simple_repeat Simple_repeat 1 61 0 991 287 77 58 chr4 12552341 12552995 -189775352 - L1ME1 LINE L1 -3180 2966 2287 1518 213 19 19 chr4 12552995 12553357 -189774990 + MLT1A1 LTR MaLR 1 362 -3 991 287 77 58 chr4 12553357 12553539 -189774808 - L1ME1 LINE L1 -3859 2287 2110 13016 260 25 12 chr4 12553550 12554129 -189774218 - L1PA12 LINE L1 -759 6825 6255 300 27 0 0 chr4 12554129 12554166 -189774181 + (TG)n Simple_repeat Simple_repeat 2 38 0 13016 260 25 12 chr4 12554166 12557557 -189770790 - L1PA12 LINE L1 -1329 6255 2800 615 307 0 0 chr4 12557552 12557689 -189770658 - L1PA12 LINE L1 -5967 1617 1481 * 2845 16 0 0 chr4 12557704 12558020 -189770327 + AluYb8 SINE Alu 1 316 -2 1027 194 5 5 chr4 12558048 12558265 -189770082 - MLT1-int LTR MaLR -1172 199 1 * 5688 204 31 2 chr4 12558265 12559289 -189769058 - L1PA15-16 LINE L1 -5776 1073 20 1592 220 0 72 chr4 12559499 12559899 -189768448 + MLT1B LTR MaLR 15 385 -5 1290 202 16 18 chr4 12559904 12560492 -189767855 + MLT1B-int LTR MaLR 1 883 -488 405 214 67 17 chr4 12560612 12560734 -189767613 + MLT1A2 LTR MaLR 245 465 -2 918 270 77 34 chr4 12560739 12561183 -189767164 + MLT1C LTR MaLR 5 467 0 24 0 0 0 chr4 12561709 12561733 -189766614 + AT_rich Low_complexity Low_complexity 1 24 0 276 357 100 7 chr4 12561936 12562093 -189766254 + L2 LINE L2 2652 2793 -521 198 0 0 0 chr4 12562093 12562115 -189766232 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 276 357 100 7 chr4 12562115 12562248 -189766099 + L2 LINE L2 2793 2969 -345 4836 73 19 0 chr4 12562439 12563059 -189765288 + PABL_A LTR ERV1 26 657 -3 323 254 45 36 chr4 12563212 12563322 -189765025 + MLT1H1 LTR MaLR 441 551 -4 342 257 40 10 chr4 12563331 12563432 -189764915 - LTR67 LTR ERVL -43 514 411 452 305 13 13 chr4 12564173 12564324 -189764023 + MIR SINE MIR 2 152 -110 329 281 7 0 chr4 12564373 12564508 -189763839 + (CATATA)n Simple_repeat Simple_repeat 3 138 0 1460 205 59 137 chr4 12564789 12565301 -189763046 + MER70A LTR ERVL 1 472 0 225 339 37 46 chr4 12565416 12565600 -189762747 - MIR3 SINE MIR -63 145 3 522 296 39 0 chr4 12565812 12565991 -189762356 - MER5A DNA MER1_type 0 189 4 373 304 20 98 chr4 12566066 12566362 -189761985 - LTR16A LTR ERVL -12 438 166 277 294 65 0 chr4 12566628 12566720 -189761627 + MIR SINE MIR 39 136 -126 1385 251 137 7 chr4 12567080 12567490 -189760857 - MLT1F LTR MaLR -74 468 6 237 281 8 70 chr4 12568478 12568606 -189759741 + MIR SINE MIR 16 135 -73 1627 156 181 8 chr4 12568836 12569201 -189759146 + MSTA LTR MaLR 1 428 0 271 163 33 22 chr4 12569255 12569347 -189759000 + (TA)n Simple_repeat Simple_repeat 1 93 0 309 172 0 0 chr4 12570199 12570263 -189758084 + CT-rich Low_complexity Low_complexity 3 66 0 2101 136 0 0 chr4 12570265 12570574 -189757773 - AluY SINE Alu -2 309 1 882 92 8 0 chr4 12570574 12570693 -189757654 - AluSq/x SINE Alu -177 136 17 264 351 152 0 chr4 12571117 12571288 -189757059 + MIR SINE MIR 53 249 -13 2083 208 36 5 chr4 12571294 12571707 -189756640 + MSTB LTR MaLR 1 426 0 194 359 162 6 chr4 12571806 12571973 -189756374 + MIR SINE MIR 14 206 -56 1065 228 4 4 chr4 12572240 12572468 -189755879 + L1MA9 LINE L1 49 276 -6754 9140 257 44 27 chr4 12572487 12577400 -189750947 + L1MA9 LINE L1 1217 5916 -1190 1110 90 0 0 chr4 12577400 12577544 -189750803 + AluY SINE Alu 155 298 -13 4431 190 28 84 chr4 12577546 12578968 -189749379 + L1MA9 LINE L1 5911 7272 0 331 307 63 24 chr4 12579130 12579257 -189749090 - L2 LINE L2 -25 3247 3116 269 263 26 0 chr4 12579276 12579352 -189748995 - MER116 DNA Mariner 0 80 3 189 319 11 53 chr4 12580173 12580267 -189748080 - MIR SINE MIR -1 261 172 204 40 0 0 chr4 12580405 12580430 -189747917 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 1647 179 14 3 chr4 12580598 12580895 -189747452 - MLT1A1 LTR MaLR -49 316 17 268 216 0 0 chr4 12581083 12581134 -189747213 - MIR SINE MIR -135 127 77 191 321 115 32 chr4 12581389 12581607 -189746740 - L2 LINE L2 -927 2387 2152 2511 159 65 24 chr4 12582273 12582813 -189745534 + L1MA7 LINE L1 5730 6291 0 552 236 21 7 chr4 12583154 12583294 -189745053 - MER103 DNA DNA -24 142 1 21 0 0 0 chr4 12584323 12584344 -189744003 + AT_rich Low_complexity Low_complexity 1 21 0 1254 221 18 11 chr4 12584748 12585024 -189743323 + AluJo SINE Alu 16 293 -19 23 54 0 0 chr4 12585445 12585482 -189742865 + AT_rich Low_complexity Low_complexity 1 37 0 1918 96 54 0 chr4 12585904 12586164 -189742183 + AluSp SINE Alu 3 276 -37 270 0 0 0 chr4 12586168 12586198 -189742149 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 22 70 0 0 chr4 12588412 12588455 -189739892 + AT_rich Low_complexity Low_complexity 1 43 0 25 51 0 0 chr4 12589211 12589250 -189739097 + AT_rich Low_complexity Low_complexity 1 39 0 186 213 148 33 chr4 12589313 12589374 -189738973 + MIR SINE MIR 87 154 -108 813 246 69 3 chr4 12589489 12589790 -189738557 - MER33 DNA MER1_type -6 318 1 383 342 31 26 chr4 12589902 12590095 -189738252 - MIR3 SINE MIR -1 207 14 2452 146 21 17 chr4 12590219 12590638 -189737709 - MSTA LTR MaLR -7 421 1 250 267 25 0 chr4 12591280 12591393 -189736954 + MIR SINE MIR 40 153 -64 387 0 0 0 chr4 12591864 12591907 -189736440 + (TA)n Simple_repeat Simple_repeat 1 43 0 9078 164 18 7 chr4 12592037 12592732 -189735615 - L1MA1 LINE L1 -4 7717 7031 477 0 0 0 chr4 12592732 12592785 -189735562 + (TG)n Simple_repeat Simple_repeat 2 54 0 9078 164 18 7 chr4 12592785 12594845 -189733502 - L1MA1 LINE L1 -690 7031 4930 527 186 31 39 chr4 12594992 12595121 -189733226 + THE1C LTR MaLR 198 325 -50 3490 189 30 7 chr4 12595130 12596314 -189732033 - L1MA1 LINE L1 -3384 4181 2967 1800 180 46 25 chr4 12596314 12596681 -189731666 + THE1C LTR MaLR 1 375 0 878 169 12 0 chr4 12596682 12596842 -189731505 + THE1C-int LTR MaLR 2 163 -1417 27143 104 9 3 chr4 12596846 12601770 -189726577 - L1PA7 LINE L1 -8 6146 1192 856 133 7 40 chr4 12601773 12601924 -189726423 + THE1C LTR MaLR 230 375 0 10551 156 33 5 chr4 12601924 12603728 -189724619 - L1MA1 LINE L1 -4594 2971 1117 4468 215 36 18 chr4 12603738 12604715 -189723632 - L1MA1 LINE L1 -6562 1003 10 334 268 98 8 chr4 12605068 12605191 -189723156 - MIR SINE MIR -64 198 65 250 310 131 41 chr4 12605943 12606088 -189722259 + L2 LINE L2 3156 3313 0 180 314 86 0 chr4 12606235 12606305 -189722042 + L3 LINE CR1 1007 1082 -495 246 336 57 29 chr4 12606438 12606467 -189721880 - L2 LINE L2 -2 3311 3284 2405 148 25 23 chr4 12606467 12606898 -189721449 - MSTB1 LTR MaLR 0 432 1 246 336 57 29 chr4 12606898 12607008 -189721339 - L2 LINE L2 -29 3284 3168 2143 172 42 32 chr4 12607042 12607583 -189720764 + MLT2A2 LTR ERVL 4 554 0 503 285 55 84 chr4 12607598 12607841 -189720506 - L1MC4a LINE L1 -1725 6083 5859 2026 183 6 81 chr4 12607841 12608310 -189720037 - Tigger2a DNA MER2_type 0 434 1 503 285 55 84 chr4 12608310 12608540 -189719807 - L1MC4a LINE L1 -1949 5859 5624 2059 136 14 0 chr4 12608558 12608853 -189719494 - AluSx SINE Alu -13 299 1 33 25 0 0 chr4 12609655 12609695 -189718652 + AT_rich Low_complexity Low_complexity 1 40 0 1556 191 6 41 chr4 12610307 12610621 -189717726 + AluJb SINE Alu 1 303 -9 180 111 0 0 chr4 12610939 12610966 -189717381 + (TG)n Simple_repeat Simple_repeat 2 28 0 24 53 0 0 chr4 12611405 12611443 -189716904 + AT_rich Low_complexity Low_complexity 1 38 0 252 184 0 0 chr4 12611999 12612048 -189716299 + (CATA)n Simple_repeat Simple_repeat 2 50 0 188 330 17 68 chr4 12612826 12612944 -189715403 + MIR SINE MIR 63 174 -88 535 318 8 34 chr4 12612952 12613188 -189715159 - L2 LINE L2 -2 3311 3082 428 317 33 0 chr4 12613289 12613409 -189714938 - MIR SINE MIR -31 231 108 23 0 0 0 chr4 12614521 12614544 -189713803 + AT_rich Low_complexity Low_complexity 1 23 0 341 320 43 43 chr4 12614767 12614998 -189713349 - MIR SINE MIR 0 262 32 567 332 101 49 chr4 12616479 12617150 -189711197 + L2 LINE L2 1773 2478 -836 300 227 76 0 chr4 12617517 12617583 -189710764 + L2 LINE L2 3201 3271 -1 1953 147 7 10 chr4 12617697 12617997 -189710350 + AluSc SINE Alu 1 299 -10 188 360 132 37 chr4 12618304 12618440 -189709907 + L2 LINE L2 3122 3270 -2 3243 139 33 6 chr4 12618453 12618992 -189709355 + MER41C LTR ERV1 1 554 0 1592 165 66 33 chr4 12619192 12619555 -189708792 - THE1C LTR MaLR 0 375 1 342 316 124 19 chr4 12619684 12620007 -189708340 - MLT1J2 LTR MaLR -58 392 36 818 328 50 39 chr4 12620103 12620694 -189707653 - L2 LINE L2 -5 3308 2704 294 95 0 0 chr4 12620905 12620947 -189707400 + (A)n Simple_repeat Simple_repeat 1 42 0 414 357 58 6 chr4 12621646 12621817 -189706530 - MIR SINE MIR -62 200 21 188 343 58 44 chr4 12621853 12621990 -189706357 + MIR SINE MIR 60 198 -64 222 280 160 10 chr4 12622016 12622116 -189706231 - MIR SINE MIR -29 233 119 714 253 134 36 chr4 12622188 12622576 -189705771 - Zaphod DNA AcHobo 0 4031 3606 1299 199 86 65 chr4 12622594 12623152 -189705195 - Zaphod DNA AcHobo -3051 980 411 1541 223 112 48 chr4 12623166 12623605 -189704742 + MLT2B1 LTR ERVL 1 467 -53 285 51 0 0 chr4 12623616 12623655 -189704692 + (TA)n Simple_repeat Simple_repeat 1 39 0 282 128 0 0 chr4 12624010 12624057 -189704290 + MLT2B1 LTR ERVL 466 512 -8 320 311 60 46 chr4 12624219 12624370 -189703977 - Zaphod DNA AcHobo -3804 227 75 272 231 134 82 chr4 12624435 12624569 -189703778 - MER58B DNA MER1_type -15 326 186 1517 156 75 17 chr4 12625370 12625665 -189702682 + AluSx SINE Alu 1 312 0 453 173 9 18 chr4 12625670 12625780 -189702567 + GA-rich Low_complexity Low_complexity 3 111 0 1380 204 0 38 chr4 12625782 12626071 -189702276 + AluJo SINE Alu 17 294 -18 257 333 0 0 chr4 12626658 12626736 -189701611 + (TG)n Simple_repeat Simple_repeat 2 79 0 223 327 154 0 chr4 12627150 12627254 -189701093 - L2 LINE L2 0 3313 3194 292 349 170 0 chr4 12627320 12627532 -189700815 - MIR SINE MIR -13 249 2 1289 232 19 40 chr4 12628658 12629048 -189699299 - MER66A LTR ERV1 -40 438 88 231 36 0 0 chr4 12629456 12629484 -189698863 + (A)n Simple_repeat Simple_repeat 1 28 0 1496 149 8 0 chr4 12629659 12629907 -189698440 - L1MA4 LINE L1 -278 6022 5773 1260 280 81 37 chr4 12630310 12631151 -189697196 + L1ME3A LINE L1 5122 5996 -174 617 297 93 45 chr4 12631883 12632039 -189696308 + LTR16A LTR ERVL 23 170 -280 2035 192 68 48 chr4 12632039 12632540 -189695807 - MER67D LTR ERV1 -1 513 3 617 297 93 45 chr4 12632540 12632780 -189695567 + LTR16A LTR ERVL 170 438 -12 24 0 0 0 chr4 12633398 12633422 -189694925 + AT_rich Low_complexity Low_complexity 1 24 0 1145 268 31 25 chr4 12633655 12634009 -189694338 + MLT1A1 LTR MaLR 10 365 0 23 54 0 0 chr4 12634328 12634365 -189693982 + AT_rich Low_complexity Low_complexity 1 37 0 380 291 58 7 chr4 12634368 12634646 -189693701 + L1ME2 LINE L1 2924 3215 -2931 27 0 0 0 chr4 12634718 12634745 -189693602 + AT_rich Low_complexity Low_complexity 1 27 0 593 309 125 45 chr4 12635164 12636060 -189692287 + L1ME2 LINE L1 4976 5947 -217 22 0 0 0 chr4 12636065 12636087 -189692260 + AT_rich Low_complexity Low_complexity 1 22 0 284 236 28 0 chr4 12636093 12636165 -189692182 - LTR16A LTR ERVL -8 442 369 2153 179 33 31 chr4 12636167 12636591 -189691756 - MSTB LTR MaLR -1 425 1 7700 218 39 13 chr4 12636591 12637523 -189690824 - MSTB-int LTR MaLR 0 1651 658 1470 39 0 11 chr4 12637523 12637705 -189690642 + L1PA4 LINE L1 5969 6148 -7 7700 218 39 13 chr4 12637705 12638381 -189689966 - MSTB-int LTR MaLR -993 658 1 2311 176 19 30 chr4 12638381 12638812 -189689535 - MSTB LTR MaLR 0 426 1 2644 93 6 6 chr4 12638912 12639276 -189689071 + THE1B LTR MaLR 1 364 0 29 60 0 0 chr4 12639655 12639705 -189688642 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr4 12639891 12639912 -189688435 + AT_rich Low_complexity Low_complexity 1 21 0 1585 264 21 17 chr4 12640166 12640586 -189687761 + MLT1A2-int LTR MaLR 1314 1735 0 764 204 39 185 chr4 12640586 12641023 -189687324 + MLT1A2 LTR MaLR 1 373 -1 968 344 33 7 chr4 12641025 12641455 -189686892 - LTR16C LTR ERVL -19 472 32 278 336 87 47 chr4 12641921 12642198 -189686149 + L3 LINE CR1 1262 1549 -28 962 191 158 51 chr4 12643516 12643789 -189684558 + AluJb SINE Alu 1 302 0 1887 141 25 0 chr4 12643937 12644239 -189684108 - AluSg SINE Alu 0 309 1 302 359 29 34 chr4 12644633 12644839 -189683508 + MIR SINE MIR 19 223 -39 183 329 174 34 chr4 12645079 12645286 -189683061 - L2 LINE L2 -177 3095 2860 2077 250 83 7 chr4 12646421 12647026 -189681321 - MLT1E1 LTR MaLR -2 652 2 207 286 95 0 chr4 12647067 12647151 -189681196 - MIR SINE MIR -164 98 7 1330 276 30 58 chr4 12647922 12648528 -189679819 - MLT1E LTR MaLR 0 593 5 188 389 11 11 chr4 12648533 12648623 -189679724 + MIR SINE MIR 3 92 -170 2594 171 19 42 chr4 12648666 12649258 -189679089 - L1MA7 LINE L1 0 6291 5714 212 348 45 0 chr4 12649349 12649438 -189678909 + MIR SINE MIR 65 157 -105 1022 183 31 0 chr4 12650291 12650482 -189677865 - MSTB LTR MaLR 0 426 230 1307 114 0 0 chr4 12650484 12650659 -189677688 - AluSx SINE Alu -137 175 1 1192 191 0 0 chr4 12650660 12650859 -189677488 - MSTB LTR MaLR -227 199 1 1577 188 68 9 chr4 12651125 12651465 -189676882 - MLT1A1 LTR MaLR -2 363 4 1572 213 19 35 chr4 12652390 12652756 -189675591 + MLT1A1 LTR MaLR 1 360 -5 347 262 130 92 chr4 12653363 12653608 -189674739 + L1MEc LINE L1 1258 1492 -4904 2029 128 57 35 chr4 12653608 12653975 -189674372 - THE1C LTR MaLR 0 375 1 347 262 130 92 chr4 12653975 12654315 -189674032 + L1MEc LINE L1 1492 1818 -4578 186 0 88 0 chr4 12654315 12654349 -189673998 + (TA)n Simple_repeat Simple_repeat 2 38 0 347 262 130 92 chr4 12654349 12654757 -189673590 + L1MEc LINE L1 1818 2289 -4107 2243 56 11 31 chr4 12655343 12655653 -189672694 - AluY SINE Alu 0 304 1 338 215 77 62 chr4 12655749 12655879 -189672468 + L1MEc LINE L1 3140 3271 -2944 367 314 48 67 chr4 12656029 12656360 -189671987 - L1MC4a LINE L1 -1880 5928 5604 236 268 81 16 chr4 12656500 12656623 -189671724 - L1P LINE L1 -736 5420 5290 21 0 0 0 chr4 12657428 12657449 -189670898 + AT_rich Low_complexity Low_complexity 1 21 0 1709 164 0 41 chr4 12657542 12657834 -189670513 - AluJb SINE Alu -30 282 3 2628 57 40 6 chr4 12658134 12658484 -189669863 + L1PA8 LINE L1 5810 6171 -1 431 139 0 13 chr4 12658739 12658818 -189669529 + (CA)n Simple_repeat Simple_repeat 2 79 0 515 293 44 68 chr4 12659056 12659261 -189669086 + LTR16C LTR ERVL 167 366 -125 * 1408 199 46 69 chr4 12659251 12659450 -189668897 - MLT1B LTR MaLR -6 384 197 441 0 0 0 chr4 12659450 12659499 -189668848 + (CA)n Simple_repeat Simple_repeat 2 50 0 1408 199 46 69 chr4 12659499 12659691 -189668656 - MLT1B LTR MaLR -193 197 2 209 219 0 0 chr4 12660628 12660669 -189667678 + MIR SINE MIR 99 139 -69 1148 266 7 3 chr4 12660803 12661100 -189667247 + L1MD3 LINE L1 7526 7823 -172 493 263 11 6 chr4 12661326 12661505 -189666842 + (TA)n Simple_repeat Simple_repeat 1 180 0 259 200 0 18 chr4 12661850 12661905 -189666442 + MIR SINE MIR 98 151 -57 367 346 39 8 chr4 12663148 12663278 -189665069 + MIR3 SINE MIR 10 143 -65 452 284 105 37 chr4 12663564 12663754 -189664593 - L2 LINE L2 0 3313 3111 224 327 10 20 chr4 12664188 12664289 -189664058 - L2 LINE L2 -4 3309 3210 220 336 0 49 chr4 12664587 12664709 -189663638 + MIR SINE MIR 91 206 -56 850 299 107 10 chr4 12665308 12665699 -189662648 - LTR16C LTR ERVL 0 491 63 7448 31 11 0 chr4 12665763 12666885 -189661462 - L1PA4 LINE L1 -5 6150 5025 473 296 19 31 chr4 12666885 12667044 -189661303 - MIR SINE MIR -93 169 13 222 37 0 0 chr4 12668354 12668381 -189659966 + (CA)n Simple_repeat Simple_repeat 2 28 0 210 328 43 35 chr4 12668764 12668880 -189659467 - L2 LINE L2 -23 3290 3174 341 325 78 7 chr4 12669231 12669385 -189658962 + MIR SINE MIR 59 223 -39 2478 106 11 16 chr4 12669581 12669958 -189658389 - THE1C LTR MaLR 0 375 1 316 185 37 19 chr4 12669974 12670082 -189658265 + (TA)n Simple_repeat Simple_repeat 1 110 0 277 240 7 52 chr4 12670085 12670239 -189658108 + A-rich Low_complexity Low_complexity 6 152 0 885 135 44 1 chr4 12670239 12670394 -189657953 - L1MA3 LINE L1 -21 6270 6109 2357 234 29 27 chr4 12670519 12671080 -189657267 - MER68 LTR ERV1 0 562 1 1669 196 40 14 chr4 12671526 12671873 -189656474 + MLT1A1 LTR MaLR 10 365 0 393 246 57 41 chr4 12672045 12672167 -189656180 - L2 LINE L2 -3 3310 3187 201 324 42 0 chr4 12672187 12672258 -189656089 - L3 LINE CR1 -881 696 623 361 315 35 56 chr4 12672611 12672808 -189655539 - L3 LINE CR1 -1368 209 17 2154 99 6 16 chr4 12672911 12673224 -189655123 - AluSg SINE Alu 0 310 1 457 298 30 0 chr4 12673804 12673935 -189654412 + MIR3 SINE MIR 20 154 -54 26 0 0 0 chr4 12674522 12674548 -189653799 + AT_rich Low_complexity Low_complexity 1 26 0 5023 172 45 22 chr4 12675495 12675981 -189652366 - L1MA4 LINE L1 0 6300 5827 2355 131 14 3 chr4 12675981 12676341 -189652006 + THE1B LTR MaLR 1 364 0 5023 172 45 22 chr4 12676341 12677820 -189650527 - L1MA4 LINE L1 -473 5827 4305 272 229 48 12 chr4 12677851 12677934 -189650413 + L1ME LINE L1 5529 5614 -507 271 234 204 61 chr4 12678138 12678369 -189649978 - ORSL DNA AcHobo 0 275 12 899 367 83 0 chr4 12678745 12679205 -189649142 - MLT1G LTR MaLR -2 588 91 299 271 82 86 chr4 12679313 12679538 -189648809 - MLT1G-int LTR MaLR -6 1365 1141 207 0 0 0 chr4 12679538 12679561 -189648786 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 360 0 0 0 chr4 12679560 12679600 -189648747 + (CA)n Simple_repeat Simple_repeat 1 40 0 299 271 82 86 chr4 12679561 12679654 -189648693 - MLT1G-int LTR MaLR -230 1141 1087 479 211 114 53 chr4 12679963 12680077 -189648270 + FLAM_C SINE Alu 1 121 -22 219 69 0 0 chr4 12680077 12680106 -189648241 + (TA)n Simple_repeat Simple_repeat 1 29 0 192 216 0 0 chr4 12680436 12680487 -189647860 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 677 163 16 24 chr4 12680506 12680629 -189647718 + FRAM SINE Alu 12 133 -43 258 192 0 0 chr4 12680640 12680692 -189647655 + Alu SINE Alu 239 290 -12 272 316 18 9 chr4 12681403 12681517 -189646830 - MLT1G-int LTR MaLR -1619 116 2 1306 288 79 21 chr4 12681533 12682108 -189646239 - MLT1G LTR MaLR -18 572 3 211 376 14 21 chr4 12682752 12682893 -189645454 - MIR3 SINE MIR -67 141 2 189 277 69 30 chr4 12683583 12683684 -189644663 + MIR SINE MIR 79 183 -79 1797 143 69 69 chr4 12683696 12684075 -189644272 + MLT1B LTR MaLR 12 390 0 237 276 11 24 chr4 12684971 12685070 -189643277 - MIR SINE MIR -96 112 15 210 143 61 0 chr4 12685109 12685158 -189643189 + (CAAA)n Simple_repeat Simple_repeat 4 55 0 1184 66 7 0 chr4 12685606 12685757 -189642590 + AluY SINE Alu 152 303 -8 1319 315 95 35 chr4 12686324 12686916 -189641431 - L2 LINE L2 -8 3305 2639 2233 123 0 0 chr4 12686916 12687224 -189641123 + AluSg SINE Alu 1 308 -2 1319 315 95 35 chr4 12687224 12687518 -189640829 - L2 LINE L2 -674 2639 2364 267 323 69 39 chr4 12687640 12687770 -189640577 - L2 LINE L2 -219 3053 2920 2257 230 9 25 chr4 12688153 12688610 -189639737 + MLT2B1 LTR ERVL 1 463 -57 285 29 0 0 chr4 12688610 12688644 -189639703 + (TCCC)n Simple_repeat Simple_repeat 2 35 0 2257 230 9 25 chr4 12688644 12688673 -189639674 + MLT2B1 LTR ERVL 463 481 -39 699 108 0 0 chr4 12688673 12688784 -189639563 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 2257 230 9 25 chr4 12688784 12688822 -189639525 + MLT2B1 LTR ERVL 481 518 -2 268 314 86 9 chr4 12689351 12689459 -189638888 - MIR SINE MIR -63 145 53 302 289 36 0 chr4 12689579 12689662 -189638685 + L2 LINE L2 3227 3312 -1 204 158 0 0 chr4 12689814 12689852 -189638495 + (TG)n Simple_repeat Simple_repeat 1 38 0 698 243 107 6 chr4 12690072 12690241 -189638106 + MER58A DNA MER1_type 2 187 -37 287 360 0 20 chr4 12690265 12690365 -189637982 - MIR3 SINE MIR -48 160 63 2283 98 0 0 chr4 12691319 12691615 -189636732 - AluSg SINE Alu -14 296 1 249 196 36 0 chr4 12691825 12691881 -189636466 - LTR67 LTR ERVL -5 552 495 232 368 42 14 chr4 12692465 12692609 -189635738 + MLT1K LTR MaLR 354 501 -87 273 29 0 0 chr4 12693161 12693195 -189635152 + (CA)n Simple_repeat Simple_repeat 1 34 0 210 71 0 0 chr4 12693202 12693230 -189635117 + (GAAAA)n Simple_repeat Simple_repeat 5 32 0 338 288 77 35 chr4 12693502 12693672 -189634675 - MIR SINE MIR -33 229 53 1301 228 39 43 chr4 12694129 12694595 -189633752 - MLT2C2 LTR ERVL 0 464 1 541 256 23 118 chr4 12697698 12698003 -189630344 + L2 LINE L2 3038 3313 0 21 0 0 0 chr4 12699479 12699500 -189628847 + AT_rich Low_complexity Low_complexity 1 21 0 308 246 171 40 chr4 12700025 12700200 -189628147 + MIR SINE MIR 53 250 -12 2094 110 20 6 chr4 12701001 12701437 -189626910 - L1PA12 LINE L1 -589 5574 5135 * 2581 110 19 0 chr4 12701435 12701809 -189626538 + L1PA12 LINE L1 5578 5958 -210 304 229 48 19 chr4 12701951 12702056 -189626291 + L1PA12 LINE L1 5911 6018 -150 477 191 48 0 chr4 12702064 12702169 -189626178 + L1PA12 LINE L1 6052 6161 -7 21 0 0 0 chr4 12702169 12702190 -189626157 + AT_rich Low_complexity Low_complexity 1 21 0 403 308 58 38 chr4 12702737 12702988 -189625359 + MIR SINE MIR 8 261 -1 246 335 56 1 chr4 12703093 12703201 -189625146 + MIR SINE MIR 49 160 -62 333 321 43 74 chr4 12703247 12703546 -189624801 + L2 LINE L2 2207 2496 -818 279 279 0 0 chr4 12703779 12703847 -189624500 + L2 LINE L2 3163 3230 -42 2278 82 0 0 chr4 12705538 12705863 -189622484 + AluY SINE Alu 1 325 0 420 317 44 29 chr4 12705916 12706121 -189622226 - L2 LINE L2 -10 3303 3096 263 317 94 27 chr4 12706100 12706324 -189622023 - L2 LINE L2 -3064 250 12 * 7316 36 15 7 chr4 12706582 12707945 -189620402 - L1PA4 LINE L1 -3 6152 4785 2010 132 14 0 chr4 12707961 12708257 -189620090 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr4 12708257 12708277 -189620070 + (GGGGA)n Simple_repeat Simple_repeat 1 20 0 35 24 0 0 chr4 12708598 12708640 -189619707 + AT_rich Low_complexity Low_complexity 1 42 0 455 324 66 41 chr4 12709619 12710011 -189618336 + L1MC/D LINE L1 2676 3077 -3069 35 78 0 0 chr4 12710155 12710232 -189618115 + AT_rich Low_complexity Low_complexity 1 77 0 378 261 79 94 chr4 12711262 12711465 -189616882 - MIR SINE MIR -58 204 5 342 295 6 64 chr4 12711472 12711645 -189616702 + L1MC/D LINE L1 5305 5467 -2341 325 93 0 0 chr4 12711683 12711737 -189616610 + Alu SINE Alu 247 300 0 2017 125 24 0 chr4 12711758 12712047 -189616300 + AluSg SINE Alu 1 296 -14 254 308 113 8 chr4 12712126 12712259 -189616088 + MLT1I LTR MaLR 3 149 -260 24 32 0 0 chr4 12712272 12712303 -189616044 + AT_rich Low_complexity Low_complexity 1 31 0 1944 106 0 35 chr4 12712392 12712674 -189615673 + AluSg SINE Alu 1 272 -38 184 255 21 0 chr4 12712920 12712967 -189615380 + L2 LINE L2 3213 3260 -12 23 54 0 0 chr4 12714372 12714409 -189613938 + AT_rich Low_complexity Low_complexity 1 37 0 195 162 0 0 chr4 12714650 12714687 -189613660 + (ATG)n Simple_repeat Simple_repeat 1 37 0 271 261 0 14 chr4 12714862 12714931 -189613416 + GA-rich Low_complexity Low_complexity 3 70 0 946 275 104 51 chr4 12716470 12717055 -189611292 - L1ME3A LINE L1 0 6170 5555 802 149 52 112 chr4 12717123 12717391 -189610956 + L1MA7 LINE L1 6040 6291 0 934 210 7 7 chr4 12717412 12724261 -189604086 - ALR/Alpha Satellite centromeric -2 9847 3001 2066 82 21 85 chr4 12724261 12724590 -189603757 - AluY SINE Alu -3 308 1 934 210 7 7 chr4 12724590 12725468 -189602879 - ALR/Alpha Satellite centromeric -6848 3001 2125 2099 121 0 34 chr4 12725468 12725790 -189602557 - AluY SINE Alu 0 311 1 934 210 7 7 chr4 12725790 12727257 -189601090 - ALR/Alpha Satellite centromeric -7724 2125 1 905 211 13 8 chr4 12727273 12730805 -189597542 - ALR/Alpha Satellite centromeric 0 3549 1 992 193 7 0 chr4 12730826 12732655 -189595692 - ALR/Alpha Satellite centromeric 0 1841 1 913 194 24 6 chr4 12732668 12733373 -189594974 - ALR/Alpha Satellite centromeric 0 717 1 637 279 124 18 chr4 12733382 12733834 -189594513 - L1M4 LINE L1 -2193 3953 3454 26 0 0 0 chr4 12733867 12733893 -189594454 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr4 12733915 12733940 -189594407 + AT_rich Low_complexity Low_complexity 1 25 0 2663 112 19 2 chr4 12733940 12734358 -189593989 - L1PA13 LINE L1 -5 6158 5734 736 173 8 16 chr4 12734358 12734485 -189593862 - FRAM SINE Alu -22 154 29 2384 203 60 41 chr4 12734505 12735213 -189593134 + LTR1B LTR ERV1 43 762 -23 591 208 0 0 chr4 12735250 12735356 -189592991 - FLAM_C SINE Alu -37 106 1 903 259 60 78 chr4 12735487 12736258 -189592089 - L1M4 LINE L1 -3180 2966 2210 471 232 0 27 chr4 12736323 12736435 -189591912 - MER103 DNA DNA -34 132 24 245 235 39 0 chr4 12736849 12736900 -189591447 - MLT1J2 LTR MaLR -123 327 275 2469 48 0 32 chr4 12737201 12737514 -189590833 + AluY SINE Alu 1 303 -8 205 358 133 0 chr4 12737680 12737831 -189590516 - MIR SINE MIR -14 248 78 263 267 30 61 chr4 12738597 12738728 -189589619 - MIR SINE MIR -42 220 94 1119 250 75 50 chr4 12739049 12739473 -189588874 + MLT1D LTR MaLR 3 437 -68 356 181 28 0 chr4 12740579 12740651 -189587696 - AluJ/FRAM SINE Alu -2 300 227 1959 170 40 36 chr4 12741233 12741778 -189586569 - MLT2A2 LTR ERVL 0 554 5 238 284 0 15 chr4 12741900 12741967 -189586380 + MLT1G1 LTR MaLR 1 66 -524 351 254 210 17 chr4 12742089 12742270 -189586077 + MLT1G1 LTR MaLR 33 248 -282 * 376 340 35 35 chr4 12742266 12742410 -189585937 + MLT1G1 LTR MaLR 374 517 -78 4665 120 52 11 chr4 12742415 12743158 -189585189 - MER4E LTR ERV1 -5 774 1 247 247 0 13 chr4 12743164 12743241 -189585106 + MLT1G1 LTR MaLR 520 595 0 342 284 69 17 chr4 12743943 12744059 -189584288 - MER5A DNA MER1_type -30 159 38 255 288 96 40 chr4 12743957 12744082 -189584265 + MER5A DNA MER1_type 55 186 -3 * 246 275 92 50 chr4 12744211 12744331 -189584016 + LTR16A LTR ERVL 1 125 -325 394 238 121 44 chr4 12744937 12745143 -189583204 + L1MC4 LINE L1 6465 6686 -1356 303 104 0 0 chr4 12745196 12745244 -189583103 + (CA)n Simple_repeat Simple_repeat 2 49 0 1117 290 144 27 chr4 12745269 12745782 -189582565 + MLT1G1 LTR MaLR 23 595 0 247 151 38 38 chr4 12745786 12745839 -189582508 - L2 LINE L2 -950 2364 2312 28 61 0 0 chr4 12745886 12745935 -189582412 + AT_rich Low_complexity Low_complexity 1 49 0 252 315 22 11 chr4 12745989 12746078 -189582269 - L2 LINE L2 -639 2675 2586 279 356 111 0 chr4 12746390 12746525 -189581822 + MIR SINE MIR 103 252 -10 192 40 0 0 chr4 12747543 12747568 -189580779 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 291 294 49 0 chr4 12747722 12747824 -189580523 + MIR SINE MIR 32 138 -124 338 61 20 0 chr4 12748054 12748103 -189580244 + (CA)n Simple_repeat Simple_repeat 2 51 0 338 321 80 28 chr4 12748688 12748900 -189579447 + MIR SINE MIR 10 232 -30 366 333 76 18 chr4 12749037 12749262 -189579085 + L2 LINE L2 2828 3065 -248 321 278 113 46 chr4 12749529 12749723 -189578624 + MIR SINE MIR 26 232 -30 8046 248 54 18 chr4 12749916 12750670 -189577677 - L1MB7 LINE L1 -19 6663 5938 4996 150 29 4 chr4 12750670 12752219 -189576128 - L1PA13 LINE L1 0 6163 4591 8046 248 54 18 chr4 12752219 12752623 -189575724 - L1MB7 LINE L1 -744 5938 5550 522 70 0 0 chr4 12752623 12752694 -189575653 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 8046 248 54 18 chr4 12752694 12755209 -189573138 - L1MB7 LINE L1 -1132 5550 2847 457 182 0 0 chr4 12755209 12755286 -189573061 + U6 snRNA snRNA 31 107 0 626 281 83 45 chr4 12755289 12756242 -189572105 - L1MB7 LINE L1 -3785 2887 1730 * 3648 152 3 8 chr4 12756240 12756832 -189571515 + L1PA15 LINE L1 5556 6144 -21 1337 252 23 31 chr4 12756846 12757235 -189571112 - L1MB7 LINE L1 -6149 393 8 3839 119 0 0 chr4 12757681 12758234 -189570113 + MER41A LTR ERV1 2 554 0 1210 219 25 4 chr4 12758737 12759011 -189569336 - AluJo SINE Alu -22 290 11 1137 299 139 14 chr4 12759566 12760334 -189568013 + Charlie8 DNA MER1_type 2 865 -1552 1739 291 59 48 chr4 12760516 12761589 -189566758 + Charlie8 DNA MER1_type 1171 2254 -163 1360 214 33 55 chr4 12761962 12762326 -189566021 - MLT1A1 LTR MaLR 0 365 10 26 30 0 0 chr4 12763400 12763433 -189564914 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr4 12764132 12764153 -189564194 + AT_rich Low_complexity Low_complexity 1 21 0 720 286 48 4 chr4 12764350 12764581 -189563766 + MIR SINE MIR 20 260 -2 268 188 31 42 chr4 12764665 12764761 -189563586 + T-rich Low_complexity Low_complexity 1 95 0 26 30 0 0 chr4 12765040 12765073 -189563274 + AT_rich Low_complexity Low_complexity 1 33 0 451 334 113 36 chr4 12766441 12766611 -189561736 + L3 LINE CR1 1109 1264 -313 237 33 0 0 chr4 12766611 12766641 -189561706 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 451 334 113 36 chr4 12766641 12766805 -189561542 + L3 LINE CR1 1264 1469 -108 530 351 88 39 chr4 12767960 12768367 -189559980 - LTR16A LTR ERVL -6 444 18 925 213 150 57 chr4 12768911 12769245 -189559102 + MLT1A1 LTR MaLR 1 365 0 552 293 140 13 chr4 12769386 12769615 -189558732 + MIR SINE MIR 3 260 -2 183 430 0 0 chr4 12769657 12769743 -189558604 - MIR SINE MIR -170 92 7 251 264 66 44 chr4 12769929 12770020 -189558327 + MIR SINE MIR 119 211 -51 359 180 16 0 chr4 12772415 12772476 -189555871 - L3 LINE CR1 -124 1453 1392 184 227 0 45 chr4 12772568 12772612 -189555735 - L3 LINE CR1 -344 1233 1192 363 297 11 2 chr4 12772989 12773103 -189555244 - MIR SINE MIR -66 142 34 208 270 16 0 chr4 12773125 12773188 -189555159 + (CATATA)n Simple_repeat Simple_repeat 4 67 0 188 306 47 24 chr4 12773291 12773376 -189554971 + MIR SINE MIR 53 139 -123 1564 227 28 18 chr4 12773642 12774034 -189554313 + MSTD LTR MaLR 1 396 0 22 0 0 0 chr4 12774375 12774397 -189553950 + AT_rich Low_complexity Low_complexity 1 22 0 1241 231 98 50 chr4 12775074 12775494 -189552853 + MLT1D LTR MaLR 1 440 -65 2142 176 37 28 chr4 12775506 12776051 -189552296 - MLT2A2 LTR ERVL 0 554 1 313 212 0 0 chr4 12776051 12776116 -189552231 + MLT1D LTR MaLR 441 505 0 2125 83 45 3 chr4 12776504 12776793 -189551554 + AluY SINE Alu 1 301 -10 3396 44 0 0 chr4 12776803 12777214 -189551133 + L1PA5 LINE L1 5419 5829 -325 41317 46 23 6 chr4 12777214 12783262 -189545085 + L1PA3 LINE L1 1 6155 0 2699 51 0 0 chr4 12783272 12783608 -189544739 + L1PA5 LINE L1 5814 6149 -5 21 57 0 0 chr4 12785585 12785620 -189542727 + AT_rich Low_complexity Low_complexity 1 35 0 26755 31 1 0 chr4 12785703 12789734 -189538613 + L1PA2 LINE L1 2124 6155 0 1772 142 151 11 chr4 12789756 12790108 -189538239 - MSTA LTR MaLR -27 401 1 279 200 0 0 chr4 12790138 12790193 -189538154 + Charlie8 DNA MER1_type 1373 1427 -990 355 247 43 91 chr4 12791612 12791798 -189536549 + LTR16A LTR ERVL 268 444 -6 21 89 0 0 chr4 12791872 12791928 -189536419 + AT_rich Low_complexity Low_complexity 1 56 0 218 316 122 31 chr4 12792321 12792419 -189535928 + MIR SINE MIR 21 127 -81 21 57 0 0 chr4 12792662 12792697 -189535650 + AT_rich Low_complexity Low_complexity 1 35 0 504 250 96 0 chr4 12793599 12793735 -189534612 + MER106B DNA MER1_type 1 149 -910 2135 137 0 0 chr4 12795457 12795770 -189532577 + AluSq SINE Alu 1 313 0 320 215 54 43 chr4 12796760 12796853 -189531494 + MIR3 SINE MIR 109 202 -6 765 222 192 45 chr4 12797609 12797875 -189530472 + MLT1A1 LTR MaLR 1 305 -60 922 230 5 15 chr4 12797875 12798113 -189530234 - AluJb SINE Alu 0 320 85 381 103 17 0 chr4 12798117 12798175 -189530172 + MLT1A1 LTR MaLR 398 456 -1 1102 242 70 15 chr4 12799082 12799425 -189528922 + MLT2D LTR ERVL 1 362 -52 208 276 0 0 chr4 12799435 12799493 -189528854 + CT-rich Low_complexity Low_complexity 2 59 0 434 228 0 0 chr4 12799606 12799684 -189528663 + Tigger5 DNA MER2_type 1 78 -2245 362 221 26 0 chr4 12799684 12799761 -189528586 - Tigger5 DNA MER2_type -3 2320 2242 * 423 198 0 12 chr4 12799751 12799832 -189528515 + Tigger5 DNA MER2_type 2242 2321 -2 187 250 0 19 chr4 12800783 12800835 -189527512 + MIR SINE MIR 161 211 -51 896 234 127 7 chr4 12801992 12802283 -189526064 + LTR52 LTR ERVL 94 419 -2 1560 256 45 14 chr4 12802284 12802857 -189525490 + L1ME2 LINE L1 5311 5901 -263 751 306 37 42 chr4 12802857 12803210 -189525137 + LTR16B LTR ERVL 11 361 -103 2188 153 27 17 chr4 12803240 12803651 -189524696 + L1MA8 LINE L1 5457 5871 -420 2367 245 36 40 chr4 12803705 12804272 -189524075 + L1ME2 LINE L1 5140 5701 -463 1808 177 38 16 chr4 12804272 12804639 -189523708 - THE1C LTR MaLR 0 375 1 2367 245 36 40 chr4 12804639 12805094 -189523253 + L1ME2 LINE L1 5701 6156 -8 418 241 86 9 chr4 12805897 12806013 -189522334 - MER63 DNA MER1_type -85 751 1 28 0 0 0 chr4 12806032 12806060 -189522287 + AT_rich Low_complexity Low_complexity 1 28 0 287 305 24 0 chr4 12806180 12806262 -189522085 - MIR SINE MIR -116 146 63 2100 105 129 8 chr4 12806294 12806674 -189521673 + LTR7 LTR ERV1 23 448 -2 18132 96 45 14 chr4 12806676 12809576 -189518771 + HERVH LTR ERV1 1 2987 -4726 5970 74 5 5 chr4 12809570 12810424 -189517923 + HERVH LTR ERV1 3140 3993 -3720 * 4095 148 0 1 chr4 12810426 12811089 -189517258 + HERVH LTR ERV1 4488 5149 -2564 1254 148 19 0 chr4 12811090 12811306 -189517041 + HERVH LTR ERV1 5600 5819 -1894 2315 90 45 16 chr4 12811306 12811685 -189516662 + HERVH LTR ERV1 7324 7713 0 2544 72 130 12 chr4 12811685 12812086 -189516261 + LTR7 LTR ERV1 1 448 -2 341 284 35 71 chr4 12812330 12812471 -189515876 + MIR SINE MIR 6 141 -121 257 341 24 35 chr4 12813352 12813522 -189514825 - MIR SINE MIR -65 197 30 2223 175 44 5 chr4 12813683 12814095 -189514252 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr4 12814143 12814164 -189514183 + AT_rich Low_complexity Low_complexity 1 21 0 2265 110 0 3 chr4 12814583 12814892 -189513455 - AluSc SINE Alu 0 309 2 23 54 0 0 chr4 12814894 12814931 -189513416 + AT_rich Low_complexity Low_complexity 1 37 0 204 338 65 19 chr4 12815540 12815694 -189512653 + L2 LINE L2 2153 2313 -1001 201 39 0 0 chr4 12816726 12816752 -189511595 + (CA)n Simple_repeat Simple_repeat 1 26 0 1781 169 51 37 chr4 12816946 12817491 -189510856 - MLT2A2 LTR ERVL 0 554 1 256 239 34 34 chr4 12817613 12817701 -189510646 + MIR SINE MIR 75 162 -100 570 321 101 25 chr4 12817742 12818097 -189510250 + L2 LINE L2 2007 2388 -926 422 354 25 22 chr4 12818097 12818371 -189509976 + L2 LINE L2 2505 2779 -535 296 296 65 19 chr4 12819808 12819916 -189508431 - MIR SINE MIR -27 235 123 290 178 178 0 chr4 12821278 12821385 -189506962 - L1MB4 LINE L1 -6 6174 6049 233 342 40 59 chr4 12821386 12821588 -189506759 + L2 LINE L2 2702 2899 -415 194 309 0 0 chr4 12821710 12821765 -189506582 - MIR SINE MIR -118 144 90 214 303 57 33 chr4 12871994 12872116 -189456231 + MIR SINE MIR 47 171 -91 22 35 0 0 chr4 12872376 12872405 -189455942 + AT_rich Low_complexity Low_complexity 1 29 0 184 253 36 60 chr4 12872516 12872599 -189455748 - MIR SINE MIR -77 185 105 1955 112 87 0 chr4 12873671 12873957 -189454390 - AluSq SINE Alu -2 311 1 373 284 103 9 chr4 12874039 12874155 -189454192 + L2 LINE L2 3138 3264 -8 1683 143 84 42 chr4 12874729 12875085 -189453262 - THE1C LTR MaLR -4 371 1 192 77 0 0 chr4 12875122 12875148 -189453199 + (T)n Simple_repeat Simple_repeat 1 26 0 893 333 67 12 chr4 12876322 12876739 -189451608 - HERV16 LTR ERVL -4219 777 338 779 355 35 10 chr4 12876865 12877259 -189451088 + HERV16 LTR ERVL 2541 2944 -2052 1514 268 53 46 chr4 12877751 12878868 -189449479 + L1MEc LINE L1 1559 2650 -3565 2159 110 0 3 chr4 12878990 12879289 -189449058 - AluY SINE Alu -13 298 1 831 233 65 4 chr4 12879290 12879522 -189448825 + L1M4 LINE L1 4531 4776 -1370 1459 79 5 0 chr4 12879647 12879837 -189448510 + AluY SINE Alu 115 305 -6 280 364 45 0 chr4 12879880 12880012 -189448335 - L2 LINE L2 -1 3271 3134 519 33 0 0 chr4 12880231 12880292 -189448055 - THE1C LTR MaLR -46 329 269 1948 281 74 42 chr4 12880294 12881323 -189447024 + L1MEc LINE L1 407 1468 -5139 392 340 65 56 chr4 12881325 12881663 -189446684 + L1MEc LINE L1 1285 1625 -4803 22 0 0 0 chr4 12881663 12881685 -189446662 + AT_rich Low_complexity Low_complexity 1 22 0 3995 79 2 9 chr4 12882515 12883060 -189445287 + L1PA10 LINE L1 5622 6162 -6 335 252 200 0 chr4 12883122 12883237 -189445110 + MIR SINE MIR 47 184 -78 182 250 23 0 chr4 12883255 12883299 -189445048 - MIR SINE MIR -13 249 205 345 288 72 40 chr4 12883397 12883522 -189444825 - MIR SINE MIR -119 143 15 429 337 29 12 chr4 12883630 12883802 -189444545 + MIR3 SINE MIR 30 204 -4 403 333 115 26 chr4 12884467 12884701 -189443646 + LTR16C LTR ERVL 80 334 -157 2184 101 10 10 chr4 12884703 12885011 -189443336 - AluY SINE Alu -3 308 1 266 227 121 0 chr4 12885049 12885115 -189443232 + LTR16B LTR ERVL 1 74 -390 22 0 0 0 chr4 12885121 12885143 -189443204 + AT_rich Low_complexity Low_complexity 1 22 0 3068 160 13 0 chr4 12885143 12885680 -189442667 - L1PA16 LINE L1 -1 6165 5622 306 246 132 0 chr4 12885985 12886099 -189442248 + L1MEc LINE L1 1935 2063 -4363 21 57 0 0 chr4 12886189 12886224 -189442123 + AT_rich Low_complexity Low_complexity 1 35 0 393 267 32 43 chr4 12886664 12886851 -189441496 - L1ME LINE L1 -363 5758 5574 501 289 166 5 chr4 12888593 12888804 -189439543 + L2 LINE L2 2658 2902 -412 971 234 67 60 chr4 12888804 12889086 -189439261 + MLT2B3 LTR ERVL 270 553 -1 190 252 79 94 chr4 12889616 12889666 -189438681 - MIR SINE MIR -21 241 192 869 262 18 22 chr4 12889666 12889891 -189438456 - MER58A DNA MER1_type 0 224 1 190 252 79 94 chr4 12889891 12889967 -189438380 - MIR SINE MIR -70 192 117 1131 206 73 15 chr4 12891546 12891818 -189436529 + MLT1A2 LTR MaLR 71 358 -16 330 291 21 29 chr4 12891836 12892135 -189436212 - Charlie7 DNA MER1_type -1992 620 270 301 263 61 35 chr4 12892361 12892475 -189435872 - L1MCa LINE L1 -5101 1325 1209 240 196 36 27 chr4 12892524 12892636 -189435711 + (TA)n Simple_repeat Simple_repeat 2 114 0 47 61 0 0 chr4 12892639 12892721 -189435626 + AT_rich Low_complexity Low_complexity 1 82 0 272 265 29 0 chr4 12892830 12892932 -189435415 - L1MCa LINE L1 -5223 1384 1280 203 196 22 54 chr4 12893314 12893406 -189434941 + (TAAA)n Simple_repeat Simple_repeat 2 90 0 383 276 96 34 chr4 12893609 12893848 -189434499 + L1ME4a LINE L1 5644 5897 -224 311 345 25 8 chr4 12894008 12894127 -189434220 - MIR SINE MIR -110 152 32 352 122 0 0 chr4 12894280 12894329 -189434018 + MLT1A2 LTR MaLR 1 49 -325 378 0 0 0 chr4 12896205 12896247 -189432100 + (TG)n Simple_repeat Simple_repeat 2 43 0 1389 183 28 0 chr4 12896677 12896928 -189431419 - Tigger3(Golem) DNA MER2_type -1 3028 2771 696 241 7 0 chr4 12896926 12897063 -189431284 - Tigger3(Golem) DNA MER2_type -2888 141 4 * 26 64 0 0 chr4 12898219 12898266 -189430081 + AT_rich Low_complexity Low_complexity 1 47 0 703 284 41 9 chr4 12898270 12898488 -189429859 - MIR SINE MIR -3 259 35 1178 245 23 89 chr4 12898514 12898996 -189429351 + LTR40a LTR ERVL 5 454 -65 7485 208 28 48 chr4 12901056 12903284 -189425063 + L1PA10 LINE L1 8 2190 -4271 1724 162 39 33 chr4 12903289 12903623 -189424724 + THE1B LTR MaLR 1 336 -28 293 35 0 0 chr4 12903628 12903673 -189424674 - L1PA3 LINE L1 -3 6152 6108 20145 140 14 8 chr4 12903698 12907982 -189420365 + L1PA10 LINE L1 2191 6483 0 222 198 0 66 chr4 12908056 12908147 -189420200 + (TA)n Simple_repeat Simple_repeat 1 85 0 210 156 0 0 chr4 12908172 12908217 -189420130 + (CA)n Simple_repeat Simple_repeat 2 46 0 1267 231 144 32 chr4 12908222 12908568 -189419779 - MLT2B1 LTR ERVL -69 451 67 2298 137 28 17 chr4 12908578 12908936 -189419411 - THE1B LTR MaLR 0 364 3 2187 129 42 28 chr4 12909124 12909288 -189419059 - THE1B LTR MaLR -2 362 202 207 0 0 0 chr4 12909288 12909311 -189419036 + (GA)n Simple_repeat Simple_repeat 2 24 0 2187 129 42 28 chr4 12909311 12909503 -189418844 - THE1B LTR MaLR -162 202 1 732 290 100 48 chr4 12909518 12909959 -189418388 + LTR16B LTR ERVL 1 464 0 280 288 85 79 chr4 12909959 12910136 -189418211 - MIR SINE MIR -77 185 8 345 313 9 17 chr4 12910182 12910297 -189418050 + L1MEd LINE L1 948 1061 -5058 2262 97 0 3 chr4 12910391 12910690 -189417657 - AluY SINE Alu -13 298 1 670 221 39 25 chr4 12911467 12911671 -189416676 - L1MB8 LINE L1 -1 6177 5971 198 171 0 0 chr4 12912127 12912168 -189416179 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1020 218 14 9 chr4 12912761 12912977 -189415370 + MER20 DNA MER1_type 2 218 -1 1024 258 72 39 chr4 12913037 12913398 -189414949 + MLT1F LTR MaLR 170 542 0 452 304 88 44 chr4 12915109 12915405 -189412942 + MLT1I LTR MaLR 82 390 -19 180 0 0 0 chr4 12915519 12915539 -189412808 + (CA)n Simple_repeat Simple_repeat 1 20 0 3573 204 20 34 chr4 12916274 12916411 -189411936 - L1MB7 LINE L1 -28 6156 6019 2077 134 3 3 chr4 12916411 12916716 -189411631 + AluSx SINE Alu 1 305 -7 3573 204 20 34 chr4 12916716 12917457 -189410890 - L1MB7 LINE L1 -165 6019 5290 571 195 32 8 chr4 12917467 12917590 -189410757 - L1MC1 LINE L1 0 6333 6208 28 0 0 0 chr4 12918111 12918139 -189410208 + AT_rich Low_complexity Low_complexity 1 28 0 337 235 34 0 chr4 12918714 12918833 -189409514 + GA-rich Low_complexity Low_complexity 3 125 0 2402 138 11 0 chr4 12919451 12919822 -189408525 - THE1C LTR MaLR 0 375 1 9763 133 29 10 chr4 12919822 12921373 -189406974 - THE1C-int LTR MaLR 0 1580 1 2411 122 8 36 chr4 12921373 12921759 -189406588 - THE1C LTR MaLR 0 375 1 776 259 62 0 chr4 12921804 12922047 -189406300 - MIR SINE MIR 0 262 5 1860 170 21 42 chr4 12922545 12922734 -189405613 + THE1C LTR MaLR 1 179 -196 1880 122 42 0 chr4 12922734 12923020 -189405327 - AluSg SINE Alu -12 298 1 1860 170 21 42 chr4 12923020 12923213 -189405134 + THE1C LTR MaLR 179 375 0 217 292 0 31 chr4 12923310 12923375 -189404972 + MIR SINE MIR 20 82 -180 241 254 32 16 chr4 12923462 12923525 -189404822 + MIR SINE MIR 99 162 -100 494 354 59 14 chr4 12924851 12925340 -189403007 - L1MB8 LINE L1 -339 5823 5313 204 135 0 0 chr4 12925434 12925471 -189402876 + (A)n Simple_repeat Simple_repeat 1 37 0 287 231 82 30 chr4 12926082 12926216 -189402131 + L1M4 LINE L1 3790 3930 -2216 7811 24 0 0 chr4 12926232 12927918 -189400429 - L1PA2 LINE L1 0 6155 4470 3811 30 17 0 chr4 12928018 12928480 -189399867 - L1PA2 LINE L1 -1836 4310 3841 242 306 20 10 chr4 12928480 12928578 -189399769 + L1M4 LINE L1 3918 4016 -2130 5136 220 26 7 chr4 12928606 12930172 -189398175 - L1MC1 LINE L1 -18 6315 4724 1497 191 55 33 chr4 12930881 12931248 -189397099 + THE1C LTR MaLR 1 375 0 9292 135 22 33 chr4 12931251 12932846 -189395501 + THE1C-int LTR MaLR 4 1580 0 1537 194 88 12 chr4 12932846 12933030 -189395317 + THE1C LTR MaLR 1 170 -205 234 0 0 0 chr4 12933030 12933056 -189395291 + (TC)n Simple_repeat Simple_repeat 1 26 0 1537 194 88 12 chr4 12933056 12933212 -189395135 + THE1C LTR MaLR 170 367 -8 378 0 0 0 chr4 12933880 12933922 -189394425 + (TA)n Simple_repeat Simple_repeat 2 43 0 192 243 100 29 chr4 12934096 12934166 -189394181 + MIR SINE MIR 35 109 -99 328 287 132 8 chr4 12935029 12935158 -189393189 + L2 LINE L2 2554 2698 -616 249 159 0 0 chr4 12936729 12936773 -189391574 + CT-rich Low_complexity Low_complexity 2 45 0 21 0 0 0 chr4 12936932 12936953 -189391394 + AT_rich Low_complexity Low_complexity 1 21 0 2167 107 17 0 chr4 12937155 12937455 -189390892 - AluSc SINE Alu -4 305 1 1331 306 8 3 chr4 12937674 12938059 -189390288 - MER69 DNA AcHobo -783 443 57 439 304 15 15 chr4 12939031 12939166 -189389181 + MIR SINE MIR 17 151 -111 1366 248 34 6 chr4 12939201 12939556 -189388791 + MLT1A1 LTR MaLR 1 365 0 182 286 0 0 chr4 12939567 12939616 -189388731 + MIR SINE MIR 166 214 -48 210 171 0 0 chr4 12939643 12939684 -189388663 + (CATA)n Simple_repeat Simple_repeat 3 43 0 482 277 79 39 chr4 12940540 12940828 -189387519 - MLT1H LTR MaLR -120 289 23 188 229 83 0 chr4 12940993 12941041 -189387306 + L2 LINE L2 3261 3312 -1 24 0 0 0 chr4 12941571 12941595 -189386752 + AT_rich Low_complexity Low_complexity 1 24 0 226 133 0 0 chr4 12941985 12942015 -189386332 + Tigger3(Golem) DNA MER2_type 3007 3036 0 2278 118 9 3 chr4 12943018 12943353 -189384994 + THE1C LTR MaLR 1 360 -36 292 385 42 53 chr4 12943557 12943758 -189384589 - L2 LINE L2 -251 3062 2863 2087 175 44 7 chr4 12943758 12944169 -189384178 - MSTB LTR MaLR 0 426 1 292 385 42 53 chr4 12944169 12944229 -189384118 - L2 LINE L2 -450 2863 2804 193 395 37 9 chr4 12944604 12944713 -189383634 - L2 LINE L2 -5 3267 3156 1262 244 50 17 chr4 12948051 12948647 -189379700 + L1ME1 LINE L1 4865 5483 -683 1152 246 41 60 chr4 12948652 12949139 -189379208 + L1ME1 LINE L1 5683 6160 -6 437 288 151 58 chr4 12949704 12950044 -189378303 + L1ME LINE L1 5347 5727 -394 1989 117 28 3 chr4 12950044 12950334 -189378013 - AluSq SINE Alu -16 297 1 437 288 151 58 chr4 12950334 12950371 -189377976 + L1ME LINE L1 5727 5759 -362 210 286 71 0 chr4 12952074 12952158 -189376189 + MIR SINE MIR 74 163 -99 633 249 108 90 chr4 12952771 12953413 -189374934 - HAL1 LINE L1 0 2507 1855 3311 129 6 9 chr4 12953466 12953994 -189374353 - L1PA13 LINE L1 -2 6812 6287 18221 204 17 12 chr4 12953997 12958506 -189369841 - L1PA13 LINE L1 -858 5939 1396 4620 261 107 3 chr4 12958509 12959649 -189368698 - L1PA13 LINE L1 -5529 1258 1 308 244 0 51 chr4 12959652 12959730 -189368617 - HAL1 LINE L1 -710 1797 1724 2208 217 24 89 chr4 12959731 12960316 -189368031 + MLT2B3 LTR ERVL 8 554 0 357 333 22 14 chr4 12960917 12961055 -189367292 + MIR SINE MIR 77 215 -47 471 261 15 15 chr4 12961948 12962082 -189366265 + L2 LINE L2 2326 2459 -855 2083 120 65 29 chr4 12962082 12962433 -189365914 + THE1B LTR MaLR 1 364 0 232 224 41 0 chr4 12962456 12962505 -189365842 - AluJ/monomer SINE Alu -12 290 240 350 276 92 11 chr4 12962805 12962990 -189365357 - L1ME4a LINE L1 -214 5907 5708 331 279 69 20 chr4 12964954 12965158 -189363189 + L1ME4a LINE L1 5678 5891 -230 449 271 71 29 chr4 12965240 12965410 -189362937 - MER5A DNA MER1_type -6 183 7 239 261 37 15 chr4 12965430 12965564 -189362783 + (TA)n Simple_repeat Simple_repeat 2 138 0 315 352 56 12 chr4 12966248 12966410 -189361937 + MIR3 SINE MIR 4 172 -36 269 308 39 0 chr4 12967287 12967365 -189360982 + MIR SINE MIR 34 114 -148 26 30 0 0 chr4 12967750 12967783 -189360564 + AT_rich Low_complexity Low_complexity 1 33 0 333 198 0 0 chr4 12967886 12967967 -189360380 + (TA)n Simple_repeat Simple_repeat 2 82 0 210 332 32 63 chr4 12968056 12968246 -189360101 - L3 LINE CR1 -263 1314 1131 892 219 63 0 chr4 12968535 12968740 -189359607 - MER58A DNA MER1_type -1 223 6 878 201 7 0 chr4 12968812 12968961 -189359386 - FRAM SINE Alu -16 150 1 315 122 0 0 chr4 12969023 12969072 -189359275 + (TC)n Simple_repeat Simple_repeat 1 49 0 1414 213 75 24 chr4 12969400 12969776 -189358571 - LTR52 LTR ERVL -19 402 8 22 0 0 0 chr4 12970538 12970560 -189357787 + AT_rich Low_complexity Low_complexity 1 22 0 273 339 65 48 chr4 12971578 12971764 -189356583 - MIR3 SINE MIR -6 202 14 22 35 0 0 chr4 12971896 12971925 -189356422 + AT_rich Low_complexity Low_complexity 1 29 0 611 316 68 12 chr4 12973668 12974081 -189354266 + MLT1H LTR MaLR 84 549 0 2105 172 53 7 chr4 12974162 12974575 -189353772 - MSTB1 LTR MaLR 0 432 1 196 396 34 22 chr4 12975349 12975563 -189352784 - L2 LINE L2 -261 3011 2797 210 361 19 28 chr4 12976448 12976556 -189351791 - MIR3 SINE MIR -96 112 6 836 234 83 19 chr4 12976635 12976840 -189351507 - MER20 DNA MER1_type -1 218 1 1818 158 13 3 chr4 12976841 12977139 -189351208 + AluJo SINE Alu 1 301 -11 278 359 77 24 chr4 12978063 12978233 -189350114 - MIR SINE MIR -71 191 13 296 323 105 15 chr4 12979647 12979780 -189348567 + MIR3 SINE MIR 19 163 -45 270 411 43 12 chr4 12980758 12980921 -189347426 - MIR SINE MIR -75 187 20 1051 208 23 37 chr4 12981176 12981392 -189346955 + MER20 DNA MER1_type 7 219 0 431 317 32 37 chr4 12981407 12981653 -189346694 + L1M4 LINE L1 4352 4596 -1550 1114 291 112 58 chr4 12981721 12982516 -189345831 - L2 LINE L2 -473 2841 2004 22 0 0 0 chr4 12982574 12982596 -189345751 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr4 12982849 12982896 -189345451 + AT_rich Low_complexity Low_complexity 1 47 0 775 209 147 0 chr4 12983988 12984151 -189344196 + MER5A DNA MER1_type 3 189 0 800 235 76 46 chr4 12985939 12986177 -189342170 - MIR SINE MIR 0 262 18 237 156 22 0 chr4 12986188 12986233 -189342114 + MIR SINE MIR 128 173 -89 308 242 111 10 chr4 12986827 12986926 -189341421 - MIR SINE MIR -32 230 122 1521 142 7 37 chr4 12988129 12988562 -189339785 + pTR5 LTR ERV1 742 1210 -1228 208 317 135 48 chr4 12990004 12990212 -189338135 + L2 LINE L2 2633 2858 -456 4320 89 26 0 chr4 12990406 12991011 -189337336 + L1PA10 LINE L1 5546 6166 -2 509 293 30 23 chr4 12991215 12991348 -189336999 + L2 LINE L2 3139 3272 0 589 318 24 61 chr4 12991616 12991946 -189336401 + MLT1K LTR MaLR 254 571 -17 195 286 0 0 chr4 12992020 12992062 -189336285 + L2 LINE L2 3227 3268 -4 204 296 165 17 chr4 12992488 12992603 -189335744 + MIR SINE MIR 125 256 -6 1049 136 6 0 chr4 12992907 12993084 -189335263 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 254 37 111 0 chr4 12993084 12993138 -189335209 + CT-rich Low_complexity Low_complexity 2 61 0 4121 85 9 7 chr4 12993271 12993824 -189334523 - MER41A LTR ERV1 0 554 1 185 244 267 0 chr4 12994633 12994719 -189333628 - L2 LINE L2 -2 3311 3203 292 333 69 39 chr4 12995136 12995340 -189333007 + LTR16A LTR ERVL 7 216 -234 469 257 33 76 chr4 12995376 12995508 -189332839 + HERV16 LTR ERVL 3365 3501 -1495 2645 147 14 2 chr4 12995508 12995746 -189332601 - MSTA LTR MaLR 0 428 181 2238 104 0 7 chr4 12995746 12996044 -189332303 - AluSx SINE Alu -5 307 12 2645 147 14 2 chr4 12996044 12996228 -189332119 - MSTA LTR MaLR -247 181 1 469 257 33 76 chr4 12996228 12996399 -189331948 + HERV16 LTR ERVL 3501 3655 -1341 417 317 21 0 chr4 12997744 12997886 -189330461 + HERV16 LTR ERVL 4727 4871 -893 373 284 99 25 chr4 12999518 12999680 -189328667 - LTR16C LTR ERVL -26 465 292 1766 172 3 46 chr4 13000342 13000659 -189327688 - L1P4 LINE L1 -532 5634 5305 932 148 6 0 chr4 13000659 13000821 -189327526 - L1MA2 LINE L1 -1 6303 6141 1766 172 3 46 chr4 13000821 13001055 -189327292 - L1P4 LINE L1 -861 5305 5062 2339 117 0 0 chr4 13001055 13001364 -189326983 - AluSg SINE Alu -1 309 1 1766 172 3 46 chr4 13001364 13001875 -189326472 - L1P4 LINE L1 -1104 5062 4545 2345 87 3 37 chr4 13001889 13002211 -189326136 - AluY SINE Alu 0 311 1 822 256 113 39 chr4 13002224 13002588 -189325759 + LTR16B LTR ERVL 74 464 0 465 221 66 0 chr4 13002588 13002708 -189325639 + LTR16C LTR ERVL 362 489 -2 186 43 0 0 chr4 13002759 13002782 -189325565 + (CA)n Simple_repeat Simple_repeat 2 24 0 1782 161 143 13 chr4 13003815 13004194 -189324153 - MSTA LTR MaLR 0 428 1 568 244 72 81 chr4 13005613 13005834 -189322513 + MER20 DNA MER1_type 1 219 0 203 281 250 6 chr4 13005930 13006094 -189322253 - MIR SINE MIR -19 243 40 334 316 103 22 chr4 13006842 13006978 -189321369 + L2 LINE L2 3121 3267 -5 323 323 85 18 chr4 13007705 13007869 -189320478 + L2 LINE L2 3095 3269 -3 183 129 0 0 chr4 13007877 13007908 -189320439 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 192 225 0 0 chr4 13008009 13008049 -189320298 + L2 LINE L2 3217 3256 -16 21 0 0 0 chr4 13008141 13008162 -189320185 + AT_rich Low_complexity Low_complexity 1 21 0 325 300 59 35 chr4 13008536 13008706 -189319641 - MIR SINE MIR -6 256 83 497 254 87 7 chr4 13008758 13008896 -189319451 - MER63 DNA MER1_type -287 775 1 395 285 51 7 chr4 13009402 13009539 -189318808 - L2 LINE L2 0 3313 3171 * 708 258 56 28 chr4 13009535 13009787 -189318560 + MIR SINE MIR 5 262 0 280 374 99 11 chr4 13009851 13010113 -189318234 - L2 LINE L2 -223 3090 2806 519 60 0 0 chr4 13010167 13010234 -189318113 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 260 274 57 89 chr4 13011298 13011355 -189316992 - MIR SINE MIR -74 188 131 3914 96 3 12 chr4 13011355 13011379 -189316968 - L1PA13 LINE L1 -11 6152 6129 1847 132 36 93 chr4 13011379 13011765 -189316582 - THE1B LTR MaLR 0 364 1 3914 96 3 12 chr4 13011765 13012305 -189316042 - L1PA13 LINE L1 -34 6129 5593 260 274 57 89 chr4 13012305 13012404 -189315943 - MIR SINE MIR -131 131 37 21 0 0 0 chr4 13012624 13012645 -189315702 + AT_rich Low_complexity Low_complexity 1 21 0 209 282 121 24 chr4 13012789 13012913 -189315434 + MIR SINE MIR 114 249 -13 976 178 0 12 chr4 13012981 13013144 -189315203 - FRAM SINE Alu -18 158 1 24 0 0 0 chr4 13014851 13014875 -189313472 + AT_rich Low_complexity Low_complexity 1 24 0 232 224 30 0 chr4 13015419 13015486 -189312861 + MER116 DNA Mariner 1 69 -11 903 206 225 39 chr4 13016993 13017353 -189310994 - MSTC LTR MaLR -1 427 1 2356 145 3 6 chr4 13017543 13017908 -189310439 + THE1B LTR MaLR 1 364 0 28 0 0 0 chr4 13017928 13017956 -189310391 + AT_rich Low_complexity Low_complexity 1 28 0 520 328 68 28 chr4 13018020 13018270 -189310077 - MIR SINE MIR -1 261 2 1442 209 59 0 chr4 13018364 13018799 -189309548 + MLT2B1 LTR ERVL 2 513 -2 239 336 36 7 chr4 13019260 13019400 -189308947 + L3b LINE CR1 1117 1260 -323 292 335 112 29 chr4 13020040 13020282 -189308065 + MLT1I LTR MaLR 99 360 -49 543 160 22 28 chr4 13020379 13020560 -189307787 + (TA)n Simple_repeat Simple_repeat 1 180 0 709 149 16 32 chr4 13020601 13020902 -189307445 + (TA)n Simple_repeat Simple_repeat 1 296 0 242 222 0 25 chr4 13020928 13021009 -189307338 + (TATATG)n Simple_repeat Simple_repeat 6 84 0 380 274 143 34 chr4 13021214 13021389 -189306958 + MIR SINE MIR 48 241 -21 1819 134 52 71 chr4 13021766 13022147 -189306200 + THE1C LTR MaLR 2 375 0 925 201 12 85 chr4 13022650 13022818 -189305529 - AluJo SINE Alu -17 295 151 2136 106 10 3 chr4 13022818 13023111 -189305236 - AluSq SINE Alu -18 295 1 925 201 12 85 chr4 13023111 13023201 -189305146 - AluJo SINE Alu -161 151 56 2004 185 9 0 chr4 13023215 13023545 -189304802 + MER61A LTR ERV1 11 343 0 280 155 0 86 chr4 13023545 13023603 -189304744 - AluJo SINE Alu -253 55 3 811 270 81 46 chr4 13023777 13024122 -189304225 - MLT1I LTR MaLR -40 369 13 25 0 0 0 chr4 13024261 13024286 -189304061 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr4 13024585 13024608 -189303739 + AT_rich Low_complexity Low_complexity 1 23 0 10042 30 2 0 chr4 13025215 13027187 -189301160 + L1PA3 LINE L1 4182 6155 0 337 307 34 58 chr4 13027625 13027830 -189300517 + MIR SINE MIR 13 212 -50 215 197 33 0 chr4 13027973 13028034 -189300313 + (TA)n Simple_repeat Simple_repeat 1 63 0 21 100 0 0 chr4 13028109 13028179 -189300168 + AT_rich Low_complexity Low_complexity 1 70 0 1641 234 84 25 chr4 13028566 13029041 -189299306 + MLT1D LTR MaLR 3 505 0 241 370 22 0 chr4 13029365 13029457 -189298890 + L2 LINE L2 3173 3266 -6 1396 263 36 14 chr4 13029651 13030070 -189298277 + MLT1C LTR MaLR 40 467 0 276 29 0 0 chr4 13030366 13030400 -189297947 + MLT2A1 LTR ERVL 411 444 0 1099 92 0 6 chr4 13030573 13030736 -189297611 - L1PA12 LINE L1 -681 5482 5321 4329 70 29 84 chr4 13030736 13031459 -189296888 + L1PA12 LINE L1 5482 6165 -3 208 313 104 77 chr4 13031764 13031946 -189296401 + L2 LINE L2 3086 3272 0 2719 138 7 14 chr4 13033279 13033708 -189294639 + MSTA LTR MaLR 1 426 -2 252 127 0 133 chr4 13034959 13035019 -189293328 - AluSp SINE Alu -133 170 123 536 280 70 0 chr4 13035206 13035363 -189292984 - MER5A DNA MER1_type -21 168 1 315 73 0 0 chr4 13036038 13036079 -189292268 - L1PA8A LINE L1 -509 5622 5582 1762 115 8 0 chr4 13036079 13036336 -189292011 + L1PA10 LINE L1 5905 6167 -1 1860 187 18 33 chr4 13036624 13036895 -189291452 - MLT1B LTR MaLR 0 390 125 1475 213 33 35 chr4 13036895 13037261 -189291086 + MLT1A1 LTR MaLR 1 365 0 1860 187 18 33 chr4 13037261 13037385 -189290962 - MLT1B LTR MaLR -265 125 1 28 0 0 0 chr4 13037422 13037450 -189290897 + AT_rich Low_complexity Low_complexity 1 28 0 322 280 186 38 chr4 13037451 13037715 -189290632 - L2 LINE L2 -5 3308 3006 2232 124 8 153 chr4 13037728 13038250 -189290097 - Tigger2 DNA MER2_type 0 2718 2273 399 152 0 15 chr4 13038241 13038307 -189290040 - Tigger2 DNA MER2_type -2650 68 4 * 473 330 53 13 chr4 13038413 13038640 -189289707 - MIR SINE MIR -25 237 2 334 287 183 12 chr4 13038714 13038878 -189289469 + MIR SINE MIR 56 247 -15 338 236 39 0 chr4 13040245 13040343 -189288004 + MLT1H LTR MaLR 460 593 -2 267 293 61 0 chr4 13041039 13041121 -189287226 + HERV16-A1 LTR ERVL 2 88 -4908 713 191 64 38 chr4 13041152 13041387 -189286960 + L1MEc LINE L1 2093 2333 -4063 369 313 19 6 chr4 13041394 13041554 -189286793 - L1MEc LINE L1 -5631 765 604 770 272 142 30 chr4 13041700 13042038 -189286309 - L1MEc LINE L1 -5984 412 37 575 502 154 4 chr4 13042325 13042578 -189285769 + AluJb SINE Alu 1 291 -11 1445 268 56 39 chr4 13042591 13043125 -189285222 + MER119 DNA MER1_type 40 582 -1 282 160 0 0 chr4 13043140 13043190 -189285157 + (CA)n Simple_repeat Simple_repeat 1 50 0 365 344 47 0 chr4 13043936 13044064 -189284283 + MIR SINE MIR 48 181 -81 527 273 111 30 chr4 13044417 13044615 -189283732 - MER58C DNA MER1_type 0 215 2 787 325 8 8 chr4 13044730 13044979 -189283368 - MIR SINE MIR -3 259 11 427 228 89 24 chr4 13046707 13046830 -189281517 - L1ME LINE L1 -307 5814 5684 1224 229 36 63 chr4 13048206 13048442 -189279905 - MLT1A1 LTR MaLR 0 365 139 2068 137 73 14 chr4 13048442 13048786 -189279561 + THE1B LTR MaLR 1 364 0 1224 229 36 63 chr4 13048786 13048881 -189279466 - MLT1A1 LTR MaLR -226 139 43 383 242 6 25 chr4 13049401 13049562 -189278785 + GA-rich Low_complexity Low_complexity 3 160 0 1885 192 6 35 chr4 13049571 13050068 -189278279 - L1MB8 LINE L1 -140 6038 5492 526 229 25 104 chr4 13050490 13050730 -189277617 - L1M4b LINE L1 -5921 938 718 719 246 43 27 chr4 13050788 13051034 -189277313 - MER77 LTR ERV1 -9 596 375 2113 173 47 0 chr4 13051556 13051921 -189276426 - MSTB LTR MaLR 0 426 45 2361 73 0 58 chr4 13052904 13053234 -189275113 - AluY SINE Alu 0 311 1 21 36 0 0 chr4 13053459 13053487 -189274860 + AT_rich Low_complexity Low_complexity 1 28 0 2044 113 22 0 chr4 13053487 13053761 -189274586 - AluSx SINE Alu -24 288 9 1821 171 7 0 chr4 13053771 13054063 -189274284 - AluSx SINE Alu -18 294 1 1133 277 105 25 chr4 13054064 13054548 -189273799 + MER69 DNA AcHobo 278 800 -426 225 254 0 0 chr4 13054551 13054610 -189273737 + MER69 DNA AcHobo 2018 2076 -450 437 69 85 24 chr4 13054610 13054857 -189273490 + (TA)n Simple_repeat Simple_repeat 1 262 0 1651 196 45 39 chr4 13055036 13055393 -189272954 + MLT1A2 LTR MaLR 1 359 -15 219 295 124 55 chr4 13055747 13055907 -189272440 + MIR SINE MIR 26 206 -56 1849 187 53 11 chr4 13055907 13056281 -189272066 + MLT1B LTR MaLR 1 390 0 219 295 124 55 chr4 13056281 13056337 -189272010 + MIR SINE MIR 206 257 -5 25 65 0 0 chr4 13056348 13056394 -189271953 + AT_rich Low_complexity Low_complexity 1 46 0 210 356 0 0 chr4 13057010 13057069 -189271278 - MIR SINE MIR -184 78 20 438 329 47 6 chr4 13057338 13057508 -189270839 + MIR SINE MIR 13 189 -73 317 301 19 10 chr4 13058455 13058558 -189269789 - MER5A DNA MER1_type -6 183 80 362 135 0 27 chr4 13058781 13058855 -189269492 - MER92A LTR ERV1 0 412 341 294 247 12 12 chr4 13058857 13058938 -189269409 - MER92C LTR ERV1 -473 81 1 211 364 190 8 chr4 13058962 13059083 -189269264 - L2 LINE L2 -2 3270 3128 1400 173 58 18 chr4 13059490 13059768 -189268579 + AluJo SINE Alu 1 289 -23 412 282 38 8 chr4 13059818 13059949 -189268398 + MER63 DNA MER1_type 4 764 -298 1791 129 24 0 chr4 13059955 13060203 -189268144 + AluSg SINE Alu 1 254 -56 1260 119 0 0 chr4 13060203 13060380 -189267967 + AluY SINE Alu 132 308 -3 276 111 0 22 chr4 13060786 13060831 -189267516 + MSTB2 LTR MaLR 1 44 -352 1115 250 34 17 chr4 13061109 13061405 -189266942 + MSTB2 LTR MaLR 157 457 0 186 258 16 32 chr4 13061438 13061500 -189266847 - L2 LINE L2 -556 2758 2698 388 136 0 2 chr4 13061656 13061892 -189266455 + AluJb SINE Alu 3 294 -8 21 0 0 0 chr4 13062841 13062862 -189265485 + AT_rich Low_complexity Low_complexity 1 21 0 1314 323 38 30 chr4 13065606 13066364 -189261983 + L1ME2 LINE L1 11 774 -5296 1674 262 32 21 chr4 13066380 13067007 -189261340 + L1ME2 LINE L1 4387 5020 -1060 522 311 165 20 chr4 13067007 13067358 -189260989 + MER70-int LTR ERVL 2344 2745 -2278 1432 304 29 45 chr4 13067742 13068409 -189259938 + MER70-int LTR ERVL 2818 3473 -1550 2076 239 53 29 chr4 13069838 13070715 -189257632 + L1ME2 LINE L1 5057 5957 -141 229 259 25 25 chr4 13070717 13070798 -189257549 + L1ME2 LINE L1 6008 6088 -10 229 203 101 0 chr4 13070840 13070909 -189257438 + L1MC4 LINE L1 7829 7904 -138 529 227 76 11 chr4 13070985 13071272 -189257075 - MER93b LTR ERV1 0 373 39 1529 186 33 19 chr4 13071526 13071833 -189256514 - AluJb SINE Alu -1 311 1 1171 211 24 124 chr4 13072281 13072693 -189255654 + MLT1A2 LTR MaLR 4 374 0 222 337 105 0 chr4 13074795 13074890 -189253457 - MIR SINE MIR -7 255 151 351 357 60 36 chr4 13074925 13075093 -189253254 - MER5A DNA MER1_type -1 188 17 330 297 35 83 chr4 13075178 13075323 -189253024 - MER5A DNA MER1_type -16 167 25 180 348 34 11 chr4 13075338 13075427 -189252920 - MIR SINE MIR -97 111 21 2448 82 26 0 chr4 13075460 13075801 -189252546 + L1PB1 LINE L1 5801 6150 -1 296 302 37 34 chr4 13076442 13076614 -189251733 + MIR SINE MIR 3 174 -64 436 312 47 24 chr4 13077527 13077697 -189250650 - MIR SINE MIR -37 225 52 22 0 0 0 chr4 13077725 13077747 -189250600 + AT_rich Low_complexity Low_complexity 1 22 0 331 283 116 51 chr4 13079118 13079411 -189248936 + L1ME4a LINE L1 5564 5875 -246 183 300 92 46 chr4 13079454 13079584 -189248763 - MIR SINE MIR -51 211 76 3001 203 31 3 chr4 13079610 13080191 -189248156 - MER77 LTR ERV1 -8 597 1 272 101 14 87 chr4 13080629 13080698 -189247649 + L1MD1 LINE L1 6178 6241 -1 198 347 88 49 chr4 13080702 13081088 -189247259 - L2 LINE L2 -425 2889 2489 2129 121 0 7 chr4 13081099 13081397 -189246950 - AluSx SINE Alu -16 296 1 671 304 137 20 chr4 13081571 13081877 -189246470 + MLT1J2 LTR MaLR 105 446 -4 243 0 0 0 chr4 13081900 13081927 -189246420 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 234 327 46 26 chr4 13083230 13083383 -189244964 + MLT1J1 LTR MaLR 159 314 -132 284 314 0 0 chr4 13083485 13083571 -189244776 - L2 LINE L2 -944 2370 2285 297 0 0 0 chr4 13083575 13083608 -189244739 + (TG)n Simple_repeat Simple_repeat 2 34 0 1353 256 86 52 chr4 13083619 13083819 -189244528 + MLT1H1 LTR MaLR 13 205 -350 2091 124 3 3 chr4 13083819 13084118 -189244229 + AluSq SINE Alu 3 301 -12 1353 256 86 52 chr4 13084118 13084322 -189244025 + MLT1H1 LTR MaLR 205 431 -124 477 265 113 27 chr4 13084322 13084507 -189243840 + MER63A DNA MER1_type 2 202 -8 * 507 237 26 0 chr4 13084501 13084615 -189243732 + MLT1H1 LTR MaLR 437 553 -2 1998 130 0 47 chr4 13085306 13085628 -189242719 + AluSx SINE Alu 1 307 -5 554 323 74 31 chr4 13085859 13086249 -189242098 + MLT1I LTR MaLR 1 407 -2 614 107 46 23 chr4 13086456 13086748 -189241599 + (TA)n Simple_repeat Simple_repeat 1 298 0 294 301 97 7 chr4 13087306 13087473 -189240874 + MIR SINE MIR 23 201 -61 23 0 0 0 chr4 13087597 13087620 -189240727 + AT_rich Low_complexity Low_complexity 1 23 0 2144 128 0 10 chr4 13088236 13088548 -189239799 - AluSq SINE Alu -4 309 1 225 0 0 0 chr4 13088549 13088574 -189239773 + (TG)n Simple_repeat Simple_repeat 2 26 0 249 332 194 28 chr4 13088576 13088865 -189239482 - L2 LINE L2 -16 3297 2961 1871 175 0 7 chr4 13089119 13089422 -189238925 + AluSx SINE Alu 1 301 -11 191 315 63 45 chr4 13089514 13089625 -189238722 + MIR SINE MIR 34 146 -62 325 280 43 60 chr4 13090135 13090303 -189238044 - MIR3 SINE MIR -65 143 5 23 0 0 0 chr4 13090703 13090726 -189237621 + AT_rich Low_complexity Low_complexity 1 23 0 252 0 0 0 chr4 13091931 13091959 -189236388 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 517 211 0 44 chr4 13092299 13092413 -189235934 - MLT1J2 LTR MaLR 0 450 342 266 236 173 18 chr4 13092495 13092605 -189235742 - MLT1J1 LTR MaLR -249 197 71 2240 97 3 26 chr4 13092872 13093183 -189235164 + AluSx SINE Alu 1 304 -8 246 295 101 13 chr4 13094350 13094648 -189233699 + L1ME4a LINE L1 5794 6117 -4 27 100 0 0 chr4 13094648 13094738 -189233609 + AT_rich Low_complexity Low_complexity 1 90 0 372 77 0 0 chr4 13094896 13094948 -189233399 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 24 0 0 0 chr4 13095536 13095560 -189232787 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 13095970 13095995 -189232352 + AT_rich Low_complexity Low_complexity 1 25 0 255 299 35 11 chr4 13096045 13096132 -189232215 - L2 LINE L2 -3 3269 3181 195 69 0 0 chr4 13096291 13096320 -189232027 + (A)n Simple_repeat Simple_repeat 1 29 0 394 296 63 0 chr4 13096518 13096660 -189231687 + MIR SINE MIR 8 158 -104 2063 132 57 34 chr4 13096957 13097306 -189231041 - THE1B LTR MaLR -7 357 1 428 306 42 47 chr4 13097307 13097500 -189230847 - MIR SINE MIR -63 199 8 197 274 14 41 chr4 13097501 13097574 -189230773 + L2 LINE L2 2679 2749 -565 287 340 160 7 chr4 13097598 13097742 -189230605 - L2 LINE L2 0 3272 3107 865 303 26 13 chr4 13097939 13098246 -189230101 + LTR16B LTR ERVL 154 464 0 198 156 0 0 chr4 13098402 13098447 -189229900 + (CA)n Simple_repeat Simple_repeat 2 46 0 2140 124 0 16 chr4 13099036 13099342 -189229005 + AluSx SINE Alu 1 301 -11 474 291 46 7 chr4 13099518 13099669 -189228678 + MIR SINE MIR 13 169 -93 21 0 0 0 chr4 13100120 13100141 -189228206 + AT_rich Low_complexity Low_complexity 1 21 0 806 269 6 0 chr4 13100380 13100555 -189227792 + MER45A DNA AcHobo 1 176 -2 189 267 33 0 chr4 13100775 13100835 -189227512 - MIR3 SINE MIR -4 204 143 244 313 48 90 chr4 13100845 13101011 -189227336 + MER5B DNA MER1_type 20 178 0 216 182 73 0 chr4 13101023 13101078 -189227269 - MIR SINE MIR -121 141 83 1452 167 72 0 chr4 13101990 13102253 -189226094 - AluJo SINE Alu -26 286 5 4684 159 35 14 chr4 13102262 13103146 -189225201 - L1MC1 LINE L1 -2 6331 5429 28 61 0 0 chr4 13103179 13103228 -189225119 + AT_rich Low_complexity Low_complexity 1 49 0 244 286 79 11 chr4 13103434 13103612 -189224735 + L1MC4a LINE L1 4487 4676 -1470 601 292 79 10 chr4 13103641 13103843 -189224504 - MIR SINE MIR -38 224 9 894 196 0 7 chr4 13103868 13104021 -189224326 + AluJb SINE Alu 134 285 -27 192 40 0 0 chr4 13104387 13104412 -189223935 + (TG)n Simple_repeat Simple_repeat 2 26 0 1277 285 48 28 chr4 13104432 13104537 -189223810 + L1MC4a LINE L1 5332 5433 -2375 1909 141 54 38 chr4 13104537 13104906 -189223441 + THE1C LTR MaLR 1 375 0 1277 285 48 28 chr4 13104906 13105344 -189223003 + L1MC4a LINE L1 5433 5886 -1922 22 0 0 0 chr4 13105451 13105473 -189222874 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr4 13105573 13105609 -189222738 + AT_rich Low_complexity Low_complexity 1 36 0 1807 171 0 0 chr4 13105968 13106254 -189222093 + AluJo SINE Alu 1 286 -26 476 280 161 35 chr4 13106335 13106707 -189221640 - L1ME3 LINE L1 -29 6133 5715 278 275 152 7 chr4 13106802 13106940 -189221407 - MLT1L LTR MaLR -336 279 122 22 35 0 0 chr4 13107150 13107179 -189221168 + AT_rich Low_complexity Low_complexity 1 29 0 2938 73 29 20 chr4 13107250 13107659 -189220688 + L1PA6 LINE L1 5740 6152 -2 1415 128 55 0 chr4 13107674 13107892 -189220455 + MER30 DNA MER1_type 1 230 0 232 130 29 43 chr4 13107893 13107962 -189220385 - MER113 DNA MER1_type? -384 137 70 1719 308 85 27 chr4 13108161 13108184 -189220163 + L2 LINE L2 2125 2145 -1168 2359 96 0 3 chr4 13108184 13108498 -189219849 - AluSq SINE Alu 0 313 1 1719 308 85 27 chr4 13108498 13109605 -189218742 + L2 LINE L2 2145 3312 -1 860 338 108 21 chr4 13109609 13110076 -189218271 - L2 LINE L2 -60 3253 2828 5703 63 0 4 chr4 13110076 13110802 -189217545 - L1PA7 LINE L1 0 6154 5432 860 338 108 21 chr4 13110802 13111290 -189217057 - L2 LINE L2 -485 2828 2219 34 24 0 0 chr4 13111294 13111335 -189217012 + AT_rich Low_complexity Low_complexity 1 41 0 232 264 44 44 chr4 13111377 13111468 -189216879 - MIR SINE MIR -68 194 104 210 319 190 9 chr4 13111505 13111621 -189216726 - L2 LINE L2 -19 3253 3117 338 329 78 18 chr4 13113430 13113597 -189214750 + MIR SINE MIR 70 246 -16 198 301 65 11 chr4 13114179 13114272 -189214075 + L2 LINE L2 3202 3299 -14 342 0 0 0 chr4 13114342 13114380 -189213967 + (TG)n Simple_repeat Simple_repeat 2 39 0 252 217 87 122 chr4 13114542 13114644 -189213703 + MIR SINE MIR 20 103 -159 2101 111 0 7 chr4 13114644 13114923 -189213424 - AluSg SINE Alu -16 294 18 252 217 87 122 chr4 13114923 13115031 -189213316 + MIR SINE MIR 103 213 -49 42593 34 23 2 chr4 13115053 13121073 -189207274 + L1PA3 LINE L1 5 6155 0 2097 104 19 26 chr4 13121502 13121811 -189206536 - AluSg SINE Alu -3 307 1 1165 237 136 12 chr4 13122326 13122672 -189205675 + MSTD LTR MaLR 6 394 -2 207 333 161 12 chr4 13122797 13122965 -189205382 + MIR SINE MIR 3 195 -67 1306 169 35 94 chr4 13122965 13123284 -189205063 + AluJo SINE Alu 1 300 -12 418 224 28 56 chr4 13123732 13123839 -189204508 + MER58A DNA MER1_type 7 110 0 288 0 0 0 chr4 13124250 13124282 -189204065 + (TG)n Simple_repeat Simple_repeat 2 33 0 216 228 0 0 chr4 13124317 13124374 -189203973 + (TA)n Simple_repeat Simple_repeat 2 58 0 5668 162 65 23 chr4 13124376 13124584 -189203763 - Tigger3b DNA MER2_type -1798 1230 1032 2297 104 0 0 chr4 13124584 13124881 -189203466 + AluSp SINE Alu 1 297 -16 5668 162 65 23 chr4 13124881 13124960 -189203387 - Tigger3b DNA MER2_type -1996 1032 958 1731 157 112 47 chr4 13124960 13125362 -189202985 - MSTA LTR MaLR 0 428 1 5668 162 65 23 chr4 13125362 13126078 -189202269 - Tigger3b DNA MER2_type -2070 958 166 2311 125 8 19 chr4 13126078 13126446 -189201901 + THE1B LTR MaLR 1 364 0 5668 162 65 23 chr4 13126446 13126620 -189201727 - Tigger3b DNA MER2_type -2862 166 1 242 336 15 8 chr4 13126671 13126805 -189201542 - L1MEc LINE L1 -3584 2545 2411 328 302 111 5 chr4 13126877 13127066 -189201281 - L1M4 LINE L1 -3821 2325 2117 972 338 98 37 chr4 13127072 13128267 -189200080 + HAL1 LINE L1 101 1368 -1139 884 238 22 45 chr4 13128285 13128476 -189199871 + MER58A DNA MER1_type 6 193 -2227 1798 126 71 44 chr4 13128476 13128841 -189199506 - THE1C LTR MaLR 0 375 1 884 238 22 45 chr4 13128841 13128872 -189199475 + MER58A DNA MER1_type 193 223 -1 758 278 60 45 chr4 13128881 13129199 -189199148 + HAL1 LINE L1 1389 1717 -790 293 0 27 0 chr4 13129199 13129236 -189199111 + (TAA)n Simple_repeat Simple_repeat 2 39 0 758 278 60 45 chr4 13129236 13129363 -189198984 + HAL1 LINE L1 1717 1841 -666 641 304 55 39 chr4 13129445 13129902 -189198445 + HAL1 LINE L1 2037 2500 -7 831 249 170 52 chr4 13129938 13130266 -189198081 - L1ME3A LINE L1 -85 6085 5797 2366 48 0 14 chr4 13130266 13130561 -189197786 - AluY SINE Alu -20 291 1 1446 154 92 29 chr4 13130565 13130837 -189197510 - AluJb SINE Alu -23 289 1 831 249 170 52 chr4 13130837 13130949 -189197398 - L1ME3A LINE L1 -375 5795 5587 267 271 59 17 chr4 13131105 13131223 -189197124 - L1MEc LINE L1 -3644 2485 2363 30 0 0 0 chr4 13131534 13131564 -189196783 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 13131669 13131692 -189196655 + AT_rich Low_complexity Low_complexity 1 23 0 23 92 0 0 chr4 13131929 13131994 -189196353 + AT_rich Low_complexity Low_complexity 1 65 0 212 207 55 28 chr4 13132125 13132270 -189196077 + (TA)n Simple_repeat Simple_repeat 2 150 0 397 303 49 16 chr4 13132337 13132763 -189195584 - L1MEc LINE L1 -3754 2375 1980 440 273 135 65 chr4 13133002 13133357 -189194990 - L1MEc LINE L1 -4588 1722 1343 615 316 29 14 chr4 13133384 13133729 -189194618 - L1MEc LINE L1 -4866 1253 904 254 230 82 37 chr4 13134521 13134656 -189193691 + L1ME4a LINE L1 5772 5912 -209 35 24 0 0 chr4 13134784 13134826 -189193521 + AT_rich Low_complexity Low_complexity 1 42 0 287 224 24 0 chr4 13134909 13134994 -189193353 + GA-rich Low_complexity Low_complexity 1 87 0 642 26 0 0 chr4 13135702 13135778 -189192569 + (TCTCC)n Simple_repeat Simple_repeat 4 79 0 256 348 95 13 chr4 13136214 13136372 -189191975 - MIR SINE MIR -10 252 82 284 338 45 13 chr4 13136434 13136591 -189191756 + MIR3 SINE MIR 45 206 -2 1869 101 0 122 chr4 13137749 13138086 -189190261 - AluY SINE Alu -5 296 1 2174 131 0 0 chr4 13138096 13138408 -189189939 - AluSx SINE Alu 0 312 1 3422 172 9 44 chr4 13139325 13140075 -189188272 + L1MA10 LINE L1 5609 6332 -2 248 323 32 13 chr4 13140466 13140600 -189187747 + MIR SINE MIR 47 183 -25 789 291 37 8 chr4 13140667 13140911 -189187436 + MIR SINE MIR 2 252 -10 210 370 12 0 chr4 13141315 13141396 -189186951 + L2 LINE L2 252 333 -2981 1012 301 84 125 chr4 13141515 13142968 -189185379 + L2 LINE L2 393 1705 -1609 216 0 0 0 chr4 13142968 13142992 -189185355 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1012 301 84 125 chr4 13142992 13144007 -189184340 + L2 LINE L2 1705 2760 -554 561 267 0 0 chr4 13144310 13144430 -189183917 + FLAM_A SINE Alu 1 120 -13 29 28 0 0 chr4 13144432 13144468 -189183879 + AT_rich Low_complexity Low_complexity 1 36 0 1176 295 108 16 chr4 13144568 13145012 -189183335 + MLT1H LTR MaLR 1 485 -64 367 100 0 0 chr4 13145021 13145081 -189183266 - L1PA8 LINE L1 0 6172 6113 2024 102 0 0 chr4 13145082 13145356 -189182991 + L1PA8 LINE L1 5843 6116 -56 22 56 0 0 chr4 13145843 13145879 -189182468 + AT_rich Low_complexity Low_complexity 1 36 0 2212 179 15 5 chr4 13146014 13146410 -189181937 + MSTA-int LTR MaLR 1250 1649 -2 2011 144 131 8 chr4 13146413 13146794 -189181553 + MSTA LTR MaLR 1 428 0 437 324 107 47 chr4 13146798 13147043 -189181304 - L1MC4a LINE L1 -1898 5910 5681 1692 155 48 7 chr4 13147043 13147361 -189180986 + AluSx SINE Alu 1 312 0 437 324 107 47 chr4 13147361 13147584 -189180763 - L1MC4a LINE L1 -2127 5681 5414 2529 71 0 0 chr4 13148615 13148925 -189179422 + AluY SINE Alu 1 310 -1 25 0 0 0 chr4 13148978 13149003 -189179344 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr4 13149644 13149672 -189178675 + AT_rich Low_complexity Low_complexity 1 28 0 268 399 59 24 chr4 13149974 13150262 -189178085 + L2 LINE L2 2457 2754 -560 1989 115 7 14 chr4 13150341 13150511 -189177836 - AluSp SINE Alu -9 304 135 2567 58 0 3 chr4 13150511 13150823 -189177524 - AluY SINE Alu 0 311 1 1989 115 7 14 chr4 13150823 13150948 -189177399 - AluSp SINE Alu -178 135 11 319 325 24 32 chr4 13151218 13151341 -189177006 + L2 LINE L2 3139 3260 -12 267 79 0 0 chr4 13151342 13151380 -189176967 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 226 321 12 12 chr4 13151893 13151977 -189176370 - MIR3 SINE MIR -11 197 114 2565 214 47 43 chr4 13152389 13153033 -189175314 - MER82 DNA MER2_type 0 653 8 894 241 80 19 chr4 13153176 13153500 -189174847 + MER2 DNA MER2_type 1 344 0 612 174 0 0 chr4 13153764 13153862 -189174485 - AluJo SINE Alu -16 296 199 687 170 0 0 chr4 13153865 13153977 -189174370 - AluJo SINE Alu -190 122 11 27 29 0 0 chr4 13154390 13154424 -189173923 + AT_rich Low_complexity Low_complexity 1 34 0 1838 123 0 90 chr4 13154457 13154799 -189173548 - AluSg SINE Alu 0 316 3 261 83 0 0 chr4 13154907 13154943 -189173404 + (A)n Simple_repeat Simple_repeat 1 36 0 432 274 78 78 chr4 13155315 13155366 -189172981 - MLT1J LTR MaLR -1 510 460 2021 142 3 3 chr4 13155366 13155669 -189172678 + AluSq SINE Alu 1 303 -10 432 274 78 78 chr4 13155669 13155887 -189172460 - MLT1J LTR MaLR -50 461 241 745 192 81 103 chr4 13156440 13156701 -189171646 - MLT1A1 LTR MaLR -16 349 95 1553 218 50 9 chr4 13156729 13156789 -189171558 - MLT2B1 LTR ERVL 0 515 459 225 0 0 0 chr4 13156789 13156814 -189171533 + (CATA)n Simple_repeat Simple_repeat 4 28 0 1553 218 50 9 chr4 13156814 13157199 -189171148 - MLT2B1 LTR ERVL -56 459 1 448 136 0 0 chr4 13157204 13157270 -189171077 - MLT1A1 LTR MaLR -296 78 13 3230 123 0 16 chr4 13157305 13157817 -189170530 - L1PA14 LINE L1 -5 6156 5653 810 134 0 0 chr4 13157819 13157938 -189170409 + L1PA14 LINE L1 5507 5625 -536 333 284 39 10 chr4 13158464 13158566 -189169781 + L2 LINE L2 3199 3303 -10 3266 87 2 9 chr4 13158981 13159432 -189168915 + L1PA10 LINE L1 5710 6157 -11 25 0 0 0 chr4 13160063 13160088 -189168259 + AT_rich Low_complexity Low_complexity 1 25 0 234 263 81 106 chr4 13160653 13160851 -189167496 + LTR16C LTR ERVL 297 489 -2 380 271 93 0 chr4 13161006 13161124 -189167223 + MIR SINE MIR 9 137 -125 615 114 72 0 chr4 13161144 13161310 -189167037 + (TA)n Simple_repeat Simple_repeat 1 178 0 184 250 0 0 chr4 13161350 13161394 -189166953 - MIR SINE MIR -82 126 83 209 273 0 0 chr4 13161721 13161776 -189166571 + (TTCA)n Simple_repeat Simple_repeat 3 57 0 239 338 51 25 chr4 13161780 13161937 -189166410 - L2 LINE L2 -30 3283 3123 447 349 99 49 chr4 13162276 13162975 -189165372 - L2 LINE L2 -583 2731 1998 1039 227 63 39 chr4 13163181 13163516 -189164831 - MLT1C LTR MaLR 0 467 125 353 44 0 0 chr4 13163525 13163570 -189164777 + U5 snRNA snRNA 4 48 -68 * 401 287 17 9 chr4 13163566 13163681 -189164666 - MLT1C LTR MaLR -333 134 19 616 51 13 0 chr4 13163866 13163945 -189164402 - MADE1 DNA Mariner 0 80 1 222 354 85 15 chr4 13165127 13165257 -189163090 - MIR SINE MIR -6 256 118 322 222 61 40 chr4 13165965 13166047 -189162300 - MLT1H LTR MaLR -353 196 113 1188 192 76 139 chr4 13166047 13166442 -189161905 + MLT1E LTR MaLR 1 370 -223 2140 142 9 3 chr4 13166620 13166965 -189161382 + L1PA15 LINE L1 5817 6163 -2 2765 13 0 3 chr4 13169962 13170269 -189158078 + AluYb8 SINE Alu 1 306 -12 1209 168 29 5 chr4 13170280 13170489 -189157858 + AluJb SINE Alu 86 299 -13 300 254 46 69 chr4 13170807 13170937 -189157410 - L1MC4 LINE L1 -1331 6711 6585 2864 194 43 19 chr4 13171251 13171884 -189156463 - L1MB7 LINE L1 -9 6175 5528 1985 130 10 3 chr4 13172179 13172471 -189155876 - AluSc SINE Alu -15 294 1 274 250 0 83 chr4 13172612 13172732 -189155615 + MIR SINE MIR 153 262 0 21 57 0 0 chr4 13172895 13172930 -189155417 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr4 13173052 13173078 -189155269 + AT_rich Low_complexity Low_complexity 1 26 0 1682 136 3 71 chr4 13173197 13173520 -189154827 + LTR62 LTR ERVK 1 301 -418 2196 157 73 13 chr4 13173547 13173943 -189154404 - MSTB LTR MaLR -6 420 1 2424 159 0 13 chr4 13173945 13174495 -189153852 - L1P4 LINE L1 -518 5648 5105 212 280 149 28 chr4 13174566 13174673 -189153674 + L2 LINE L2 3153 3272 0 297 373 30 15 chr4 13174712 13174846 -189153501 - MIR3 SINE MIR -62 146 11 298 276 22 120 chr4 13175322 13175547 -189152800 + MIR SINE MIR 40 242 -20 263 211 35 0 chr4 13175548 13175605 -189152742 - MLT1H LTR MaLR -2 547 489 1597 180 22 30 chr4 13175605 13176031 -189152316 + L1MA8 LINE L1 5929 6351 0 2849 88 26 0 chr4 13176031 13176449 -189151898 - L1P LINE L1 -837 5309 4881 248 239 37 18 chr4 13177354 13177463 -189150884 + L1M4 LINE L1 4924 5034 -1112 1194 186 49 40 chr4 13177680 13177927 -189150420 + AluJo SINE Alu 55 303 -9 358 297 69 12 chr4 13177949 13178126 -189150221 + L1M4 LINE L1 5262 5460 -712 4495 148 22 9 chr4 13178142 13178910 -189149437 - L1PA16 LINE L1 0 6166 5389 479 179 38 0 chr4 13178904 13179010 -189149337 - L1PA16 LINE L1 -1086 5060 4951 * 3072 209 7 13 chr4 13179389 13180096 -189148251 - L1P LINE L1 -774 5372 4670 2675 212 6 39 chr4 13180093 13180764 -189147583 + L1P LINE L1 4043 4691 -1455 * 360 291 0 102 chr4 13180764 13180970 -189147377 - L1ME LINE L1 -5334 1525 1341 246 277 0 50 chr4 13180971 13181072 -189147275 - L1ME LINE L1 -5480 1467 1372 319 371 86 43 chr4 13181087 13181343 -189147004 - L1ME LINE L1 -5546 1401 1135 244 309 0 0 chr4 13181695 13181776 -189146571 - L1ME LINE L1 -5940 1007 927 226 343 173 26 chr4 13181893 13182199 -189146148 - L2 LINE L2 -2656 658 308 240 245 0 19 chr4 13182285 13182338 -189146009 + MIR SINE MIR 59 110 -152 308 374 0 4 chr4 13183264 13183368 -189144979 + MIR SINE MIR 14 115 -93 700 215 134 8 chr4 13183369 13183674 -189144673 + MER57A LTR ERV1 1 375 -28 2105 114 0 0 chr4 13183674 13183999 -189144348 + AluSg SINE Alu 1 325 0 2861 237 23 66 chr4 13184029 13184929 -189143418 + MER57A-int LTR ERV1 3 864 -6673 724 277 28 24 chr4 13185138 13185391 -189142956 + MER34C LTR ERV1 155 408 -177 812 272 66 21 chr4 13185472 13185759 -189142588 + MER57B-int LTR ERV1 4168 4467 -2291 1398 193 54 33 chr4 13185945 13186310 -189142037 - MSTB1 LTR MaLR 0 396 1 449 242 11 76 chr4 13186325 13186509 -189141838 + MER57B-int LTR ERV1 1549 2095 -3028 717 224 95 84 chr4 13186517 13186866 -189141481 + MER57B-int LTR ERV1 2364 3833 -2385 * 3081 213 68 74 chr4 13186848 13188289 -189140058 + MER57B-int LTR ERV1 2464 5821 -1716 993 214 23 26 chr4 13188781 13189099 -189139248 + MER57B-int LTR ERV1 3954 4100 -771 4192 214 20 20 chr4 13189454 13190400 -189137947 + MER57B-int LTR ERV1 6200 7145 -392 630 187 24 8 chr4 13190402 13190525 -189137822 + LTR54B LTR ERV1 8 132 -366 774 200 0 26 chr4 13190705 13190860 -189137487 + MER57B-int LTR ERV1 7387 7537 0 282 240 128 16 chr4 13190862 13190987 -189137360 + MER57B LTR ERV1 3 141 -293 366 222 22 0 chr4 13191025 13191115 -189137232 + MER57A LTR ERV1 235 326 -77 184 378 51 0 chr4 13191157 13191255 -189137092 + MIR SINE MIR 126 228 -34 26 0 0 0 chr4 13191449 13191475 -189136872 + AT_rich Low_complexity Low_complexity 1 26 0 1763 107 0 34 chr4 13191954 13192271 -189136076 - AluSx SINE Alu 0 344 37 409 240 80 108 chr4 13193075 13193362 -189134985 - L1MC4 LINE L1 -11 8031 7753 3489 239 59 15 chr4 13193362 13193966 -189134381 - L1MC4 LINE L1 -540 7502 6835 1426 186 71 29 chr4 13193966 13194316 -189134031 + MLT1A1 LTR MaLR 1 365 0 3489 239 59 15 chr4 13194316 13194708 -189133639 - L1MC4 LINE L1 -1207 6835 6462 1764 141 120 20 chr4 13195393 13195416 -189132931 + THE1C LTR MaLR 1 20 -355 2597 89 104 7 chr4 13195416 13195821 -189132526 + MLT2A1 LTR ERVL 1 444 0 1764 141 120 20 chr4 13195821 13196138 -189132209 + THE1C LTR MaLR 20 375 0 733 230 42 5 chr4 13196955 13197168 -189131179 + MER33 DNA MER1_type 1 221 -103 1728 323 125 30 chr4 13197176 13198046 -189130301 + L2 LINE L2 1744 2530 -783 1892 117 99 38 chr4 13198046 13198389 -189129958 - THE1B LTR MaLR 0 364 1 11528 94 9 1 chr4 13198390 13199955 -189128392 - THE1B-int LTR MaLR -1 1579 3 1975 123 91 26 chr4 13199957 13200299 -189128048 - THE1B LTR MaLR 0 364 1 1728 323 125 30 chr4 13200299 13200851 -189127496 + L2 LINE L2 2530 3310 -3 877 178 0 35 chr4 13201028 13201139 -189127208 + MER3 DNA MER1_type 47 152 -57 1542 146 59 150 chr4 13201139 13201366 -189126981 + Tigger2a DNA MER2_type 3 166 -2542 2254 135 0 0 chr4 13201366 13201678 -189126669 - AluSx SINE Alu 0 312 1 1542 146 59 150 chr4 13201678 13201924 -189126423 + Tigger2a DNA MER2_type 166 433 -1 877 178 0 35 chr4 13201924 13201981 -189126366 + MER3 DNA MER1_type 152 209 0 186 343 59 20 chr4 13201987 13202089 -189126258 + L2 LINE L2 3156 3261 -11 1237 231 29 41 chr4 13202146 13202296 -189126051 - MLT1A1 LTR MaLR 0 374 224 1933 102 4 0 chr4 13202296 13202550 -189125797 - AluSc SINE Alu 0 309 55 1237 231 29 41 chr4 13202550 13202756 -189125591 - MLT1A1 LTR MaLR -150 224 3 383 344 11 50 chr4 13202812 13202992 -189125355 + MIR SINE MIR 20 192 -70 667 87 0 0 chr4 13204587 13204679 -189123668 - AluSg/x SINE Alu 0 310 219 2189 126 0 0 chr4 13204846 13205139 -189123208 - AluSg SINE Alu -11 299 7 917 216 0 25 chr4 13205146 13205400 -189122947 - MLT1A1 LTR MaLR -61 304 1 282 300 0 0 chr4 13205402 13205472 -189122875 - MIR SINE MIR -112 150 81 281 260 39 87 chr4 13205544 13205648 -189122699 + MIR SINE MIR 20 118 -144 647 304 77 5 chr4 13205657 13205877 -189122470 + MIR SINE MIR 22 257 -5 191 260 130 13 chr4 13205908 13205985 -189122362 + MIR SINE MIR 120 205 -57 316 283 139 27 chr4 13206258 13206445 -189121902 + MIR SINE MIR 13 220 -42 22 35 0 0 chr4 13206581 13206610 -189121737 + AT_rich Low_complexity Low_complexity 1 29 0 2669 101 28 0 chr4 13206966 13207353 -189120994 - L1P LINE L1 -3533 2613 2216 6279 31 1 4 chr4 13207353 13208097 -189120250 + L1PA7 LINE L1 5402 6143 -11 251 270 0 40 chr4 13208151 13208225 -189120122 - L2 LINE L2 -2 3270 3200 2102 140 0 13 chr4 13208642 13208950 -189119397 + AluSx SINE Alu 1 304 -8 1761 177 0 11 chr4 13208987 13209270 -189119077 + AluJb SINE Alu 3 282 -30 190 313 114 8 chr4 13209359 13209490 -189118857 + MIR3 SINE MIR 61 205 -3 1071 193 30 44 chr4 13209665 13209853 -189118494 + LTR37A LTR ERV1 1 185 -241 2142 161 28 3 chr4 13209853 13210208 -189118139 - MLT1A1 LTR MaLR 0 365 2 1071 193 30 44 chr4 13210208 13210315 -189118032 + LTR37A LTR ERV1 185 292 -134 1621 202 5 68 chr4 13210561 13210972 -189117375 - MLT1B LTR MaLR 0 390 6 758 172 43 27 chr4 13211226 13211412 -189116935 + MER53 DNA DNA 1 189 0 867 218 38 114 chr4 13211509 13211631 -189116716 + MLT1B LTR MaLR 9 139 -251 2679 33 0 3 chr4 13211631 13211938 -189116409 + AluY SINE Alu 1 306 -5 867 218 38 114 chr4 13211938 13212231 -189116116 + MLT1B LTR MaLR 139 390 0 211 226 65 48 chr4 13212248 13212310 -189116037 + L2 LINE L2 3208 3270 -2 245 335 34 62 chr4 13213403 13213582 -189114765 - MIR SINE MIR -3 259 86 514 328 87 0 chr4 13214199 13214394 -189113953 + MIR SINE MIR 20 231 -31 314 278 10 21 chr4 13214786 13214883 -189113464 + MIR3 SINE MIR 90 185 -23 21 0 0 0 chr4 13214943 13214964 -189113383 + AT_rich Low_complexity Low_complexity 1 21 0 345 308 11 0 chr4 13215485 13215576 -189112771 - MIR3 SINE MIR -43 165 74 246 291 45 60 chr4 13215826 13215960 -189112387 + MIR SINE MIR 118 249 -13 2564 281 103 66 chr4 13216248 13217772 -189110575 + HAL1 LINE L1 62 1705 -802 1475 146 29 36 chr4 13217772 13218047 -189110300 + AluJb SINE Alu 21 293 -19 2564 281 103 66 chr4 13218047 13218881 -189109466 + HAL1 LINE L1 1705 2507 0 194 289 0 113 chr4 13219337 13219434 -189108913 - MIR3 SINE MIR -14 194 109 653 277 18 79 chr4 13219591 13219869 -189108478 - MIR SINE MIR 0 262 2 238 314 0 0 chr4 13220048 13220118 -189108229 + L2 LINE L2 3203 3272 0 827 200 0 0 chr4 13220768 13220913 -189107434 - FRAM SINE Alu -26 150 6 2357 244 30 51 chr4 13220931 13221246 -189107101 - L1ME1 LINE L1 -58 6502 6182 2476 100 47 3 chr4 13221246 13221605 -189106742 - THE1C LTR MaLR 0 375 1 2357 244 30 51 chr4 13221605 13222745 -189105602 - L1ME1 LINE L1 -378 6182 5084 2067 248 55 41 chr4 13222780 13223535 -189104812 - L1ME1 LINE L1 -2106 4434 3657 1176 155 22 9 chr4 13223535 13223761 -189104586 - L1MA2 LINE L1 -13 6291 6063 2067 248 55 41 chr4 13223761 13224141 -189104206 - L1ME1 LINE L1 -2883 3657 3284 1626 204 21 104 chr4 13224135 13224361 -189103986 + L1MA8 LINE L1 5647 5890 -401 * 2065 85 53 14 chr4 13224361 13224644 -189103703 + AluY SINE Alu 1 294 -17 1626 204 21 104 chr4 13224644 13224916 -189103431 + L1MA8 LINE L1 5890 6075 -216 1773 181 48 0 chr4 13224916 13225247 -189103100 - MER7A DNA MER2_type 0 346 2 1626 204 21 104 chr4 13225247 13225428 -189102919 + L1MA8 LINE L1 6075 6270 -21 2322 100 0 6 chr4 13225466 13225777 -189102570 - AluSc SINE Alu 0 309 1 1036 215 57 73 chr4 13225777 13226326 -189102021 - L1ME1 LINE L1 -3277 3263 2724 2074 242 101 21 chr4 13226360 13226684 -189101663 - L1ME1 LINE L1 -4538 2002 1705 233 57 29 0 chr4 13226684 13226719 -189101628 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2074 242 101 21 chr4 13226719 13227319 -189101028 - L1ME1 LINE L1 -4835 1705 1007 227 337 232 23 chr4 13228207 13228513 -189099834 + L2 LINE L2 2903 3272 0 388 320 39 54 chr4 13229092 13229351 -189098996 + MLT1L LTR MaLR 5 259 -356 558 234 48 14 chr4 13229377 13229586 -189098761 - L1MC5 LINE L1 -770 7191 6976 601 223 0 16 chr4 13229599 13229720 -189098627 - AluJb SINE Alu -21 291 173 1013 175 0 0 chr4 13229919 13230079 -189098268 - AluJb SINE Alu -152 160 1 521 323 56 10 chr4 13230253 13230448 -189097899 + MIR SINE MIR 18 221 -41 569 100 0 0 chr4 13230505 13230585 -189097762 + MADE1 DNA Mariner 1 80 0 534 333 187 21 chr4 13230818 13231391 -189096956 + L2 LINE L2 1530 2197 -1117 884 297 125 55 chr4 13231749 13232777 -189095570 + L2 LINE L2 2208 3313 0 196 376 123 19 chr4 13233207 13233369 -189094978 - L2 LINE L2 -541 2773 2595 218 250 0 0 chr4 13233498 13233550 -189094797 + L2 LINE L2 3248 3299 -14 2123 127 0 0 chr4 13233707 13233999 -189094348 + AluSx SINE Alu 1 292 -20 545 176 0 17 chr4 13234255 13234374 -189093973 + (CATA)n Simple_repeat Simple_repeat 2 118 0 305 333 0 0 chr4 13234381 13234471 -189093876 + L1MC4 LINE L1 6614 6703 -1339 * 319 326 0 0 chr4 13234417 13234506 -189093841 - L1MC4 LINE L1 -1339 6703 6615 2177 123 0 0 chr4 13234525 13234818 -189093529 - AluSg SINE Alu -17 293 1 24 32 0 0 chr4 13234827 13234858 -189093489 + AT_rich Low_complexity Low_complexity 1 31 0 362 316 61 31 chr4 13235058 13235254 -189093093 - L1ME3A LINE L1 -7 6163 5962 1516 236 131 55 chr4 13235336 13236327 -189092020 - L1MC5 LINE L1 -430 7531 6476 300 313 109 30 chr4 13236647 13237190 -189091157 - HAL1b LINE L1 -724 624 39 2213 102 3 0 chr4 13237510 13237803 -189090544 - AluSx SINE Alu -18 294 1 268 284 37 18 chr4 13238783 13238892 -189089455 + MLT1I LTR MaLR 245 355 -54 263 167 15 0 chr4 13239160 13239226 -189089121 + (TA)n Simple_repeat Simple_repeat 2 68 0 237 24 71 0 chr4 13239255 13239297 -189089050 + (TA)n Simple_repeat Simple_repeat 1 45 0 448 322 97 26 chr4 13239584 13239966 -189088381 + L1 LINE L1 4384 4792 -1354 245 234 52 0 chr4 13240008 13240085 -189088262 - L1MC4 LINE L1 -1344 6698 6618 285 276 15 104 chr4 13240508 13240642 -189087705 + MIR SINE MIR 29 150 -112 845 251 64 0 chr4 13240668 13240871 -189087476 + MIR SINE MIR 23 238 -24 265 288 34 34 chr4 13240884 13241002 -189087345 + MIR SINE MIR 135 252 -10 429 371 17 11 chr4 13241021 13241199 -189087148 + L3 LINE CR1 1394 1572 -5 285 151 0 0 chr4 13241328 13241381 -189086966 + (CA)n Simple_repeat Simple_repeat 2 54 0 216 277 106 0 chr4 13241497 13241591 -189086756 - MIR SINE MIR -1 261 158 337 244 85 21 chr4 13241906 13242048 -189086299 + MIR SINE MIR 20 171 -37 1654 155 146 6 chr4 13242188 13242530 -189085817 + MLT1B LTR MaLR 1 390 0 435 261 25 8 chr4 13242649 13242768 -189085579 - LTR28 LTR ERV1 0 1020 900 1299 197 132 110 chr4 13242847 13243047 -189085300 - LTR28 LTR ERV1 -81 816 622 257 0 30 0 chr4 13243047 13243080 -189085267 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2869 24 0 3 chr4 13243080 13243414 -189084933 - L1PA2 LINE L1 -13 6142 5810 1299 197 132 110 chr4 13243414 13243961 -189084386 - LTR28 LTR ERV1 -274 623 1 290 304 35 17 chr4 13244037 13244152 -189084195 + MIR3 SINE MIR 11 127 -81 206 266 53 80 chr4 13245141 13245254 -189083093 + MIR SINE MIR 86 195 -67 2534 236 32 5 chr4 13245412 13246027 -189082320 - MER73 LTR ERVL 0 644 13 390 317 23 75 chr4 13246137 13246402 -189081945 - L2 LINE L2 -40 3273 3023 222 116 0 0 chr4 13246812 13246855 -189081492 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 259 241 0 11 chr4 13246864 13246951 -189081396 + (TA)n Simple_repeat Simple_repeat 2 87 0 288 77 0 0 chr4 13246951 13246990 -189081357 + (CA)n Simple_repeat Simple_repeat 2 40 0 307 242 68 60 chr4 13247918 13248189 -189080158 + L1ME4a LINE L1 5535 5833 -288 2428 95 0 0 chr4 13248189 13248494 -189079853 + AluY SINE Alu 1 305 -6 307 242 68 60 chr4 13248494 13248589 -189079758 + L1ME4a LINE L1 5833 5926 -195 282 287 103 52 chr4 13248782 13248956 -189079391 + MER58A DNA MER1_type 27 209 -15 979 221 19 5 chr4 13249021 13249234 -189079113 + MER20 DNA MER1_type 4 219 0 238 162 38 36 chr4 13249599 13249846 -189078501 + (TA)n Simple_repeat Simple_repeat 1 247 0 194 296 43 26 chr4 13250339 13250454 -189077893 + MIR SINE MIR 125 241 -21 * 306 293 96 27 chr4 13250446 13250634 -189077713 - MIR SINE MIR -30 232 32 2165 182 23 14 chr4 13250712 13251140 -189077207 + MSTB1 LTR MaLR 1 432 0 225 236 14 42 chr4 13252921 13252993 -189075354 - MIR SINE MIR -63 199 130 1940 153 0 0 chr4 13253204 13253507 -189074840 - AluSx SINE Alu 0 305 3 2690 107 0 6 chr4 13253690 13254055 -189074292 + THE1B LTR MaLR 1 363 -1 250 231 0 0 chr4 13254227 13254279 -189074068 + (CA)n Simple_repeat Simple_repeat 1 52 0 340 308 131 37 chr4 13254355 13254738 -189073609 - L2 LINE L2 -671 2643 2225 206 243 29 29 chr4 13255200 13255270 -189073077 - MIR SINE MIR -32 230 161 294 168 36 93 chr4 13255274 13255381 -189072966 - MLT1F LTR MaLR -1 541 443 248 267 50 33 chr4 13255526 13255646 -189072701 - MLT1F LTR MaLR -292 257 136 217 219 158 12 chr4 13255697 13255779 -189072568 - MIR SINE MIR -66 196 103 339 293 65 126 chr4 13255874 13256168 -189072179 - L2 LINE L2 -87 3185 2910 235 286 0 0 chr4 13256350 13256399 -189071948 + (CA)n Simple_repeat Simple_repeat 1 49 0 2171 102 17 3 chr4 13256943 13257065 -189071282 + AluSp SINE Alu 1 120 -193 468 0 0 0 chr4 13257065 13257117 -189071230 + (TAA)n Simple_repeat Simple_repeat 2 53 0 2171 102 17 3 chr4 13257117 13257289 -189071058 + AluSp SINE Alu 120 299 -14 409 310 30 42 chr4 13257414 13257619 -189070728 + MIR SINE MIR 3 195 -36 369 289 131 56 chr4 13257677 13258050 -189070297 - LTR16A1 LTR ERVL -56 401 1 262 330 11 0 chr4 13258221 13258312 -189070035 + MIR SINE MIR 17 108 -154 1288 216 69 49 chr4 13258354 13258802 -189069545 + MLT1C LTR MaLR 9 465 -2 301 286 0 0 chr4 13258807 13258884 -189069463 + MIR SINE MIR 161 237 -25 2005 145 0 0 chr4 13260424 13260759 -189067588 - AluSx SINE Alu 0 335 1 433 236 99 19 chr4 13260951 13261112 -189067235 + MER117 DNA MER1_type 24 197 0 463 183 54 11 chr4 13261112 13261205 -189067142 + L2 LINE L2 3172 3268 -4 278 318 23 102 chr4 13261855 13262031 -189066316 + MIR SINE MIR 32 193 -69 231 306 89 8 chr4 13262390 13262514 -189065833 - MIR SINE MIR -114 148 15 374 274 126 39 chr4 13265551 13265747 -189062600 - MIR SINE MIR -7 255 36 21 0 0 0 chr4 13265804 13265825 -189062522 + AT_rich Low_complexity Low_complexity 1 21 0 288 91 0 0 chr4 13266008 13266052 -189062295 + (CA)n Simple_repeat Simple_repeat 1 44 0 939 210 75 45 chr4 13266060 13266393 -189061954 - MER2 DNA MER2_type 0 344 2 513 191 0 0 chr4 13266394 13266499 -189061848 + (TG)n Simple_repeat Simple_repeat 2 106 0 501 271 92 39 chr4 13266657 13266941 -189061406 + MLT1K LTR MaLR 128 426 -162 468 303 67 71 chr4 13267502 13267951 -189060396 + L1M4 LINE L1 3354 3800 -2346 224 322 35 35 chr4 13268124 13268211 -189060136 - MIR SINE MIR -149 113 27 278 150 0 17 chr4 13268411 13268471 -189059876 + (TTTC)n Simple_repeat Simple_repeat 3 61 0 210 360 130 33 chr4 13268776 13269198 -189059149 + L2 LINE L2 2475 2937 -377 40768 34 21 1 chr4 13270196 13276221 -189052126 + L1PA3 LINE L1 7 6155 0 1599 230 100 25 chr4 13276243 13276713 -189051634 + MLT1D LTR MaLR 1 505 0 1472 219 52 52 chr4 13276713 13277233 -189051114 + MLT1D-int LTR MaLR 1 611 -760 183 279 70 109 chr4 13277379 13277608 -189050739 - L2 LINE L2 -1774 1540 1321 357 109 0 0 chr4 13277626 13277681 -189050666 + (ATG)n Simple_repeat Simple_repeat 3 57 0 209 234 44 29 chr4 13277845 13277982 -189050365 + (TATAA)n Simple_repeat Simple_repeat 1 139 0 356 274 19 19 chr4 13278014 13278120 -189050227 - MIR SINE MIR -108 154 49 181 308 19 0 chr4 13278150 13278202 -189050145 - MIR SINE MIR -207 55 3 211 319 89 30 chr4 13278545 13278714 -189049633 + MIR3 SINE MIR 24 202 -6 480 366 42 28 chr4 13278859 13279288 -189049059 + L3 LINE CR1 1074 1508 -69 277 330 127 41 chr4 13279472 13279669 -189048678 + MIR SINE MIR 48 261 -1 542 311 96 34 chr4 13280100 13280486 -189047861 + LTR16C LTR ERVL 82 491 0 2285 75 0 30 chr4 13280521 13280826 -189047521 + AluY SINE Alu 1 296 -15 182 37 37 0 chr4 13280938 13280965 -189047382 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1608 199 69 62 chr4 13281439 13281887 -189046460 - MLT2B1 LTR ERVL -69 451 1 409 359 151 9 chr4 13282334 13282752 -189045595 - L2 LINE L2 -540 2774 2286 2080 116 78 29 chr4 13282752 13283097 -189045250 + THE1B LTR MaLR 1 362 -2 409 359 151 9 chr4 13283097 13283129 -189045218 - L2 LINE L2 -1028 2286 2260 210 282 196 49 chr4 13284446 13284609 -189043738 + L2 LINE L2 3125 3311 -2 254 255 102 31 chr4 13284755 13284853 -189043494 - MIR SINE MIR -46 216 112 568 311 44 22 chr4 13285092 13285320 -189043027 + L2 LINE L2 3081 3313 0 268 229 14 0 chr4 13285413 13285483 -189042864 + MER116 DNA Mariner 2 72 -8 272 347 89 37 chr4 13285596 13285786 -189042561 - L2 LINE L2 -546 2768 2569 420 226 73 8 chr4 13286342 13286466 -189041881 + MER94 DNA DNA 3 134 0 255 31 0 0 chr4 13286864 13286896 -189041451 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 592 224 189 5 chr4 13286943 13287144 -189041203 + MER5C DNA MER1_type 86 323 -1 186 316 13 38 chr4 13287162 13287241 -189041106 + MIR SINE MIR 97 173 -89 23 68 0 0 chr4 13287282 13287326 -189041021 + AT_rich Low_complexity Low_complexity 1 44 0 1937 106 20 0 chr4 13287936 13288229 -189040118 - L1MA2 LINE L1 0 6304 6006 1698 192 15 52 chr4 13288290 13288691 -189039656 + MLT1B LTR MaLR 1 386 -4 248 213 49 16 chr4 13289014 13289075 -189039272 + MIR3 SINE MIR 109 171 -37 460 279 66 66 chr4 13289085 13289329 -189039018 + MIR SINE MIR 15 258 -4 356 330 69 67 chr4 13290897 13291258 -189037089 - L2 LINE L2 0 3272 2911 284 359 55 39 chr4 13291295 13291730 -189036617 - L2 LINE L2 -67 3246 2805 1543 246 66 25 chr4 13291846 13292286 -189036061 + MLT2B1 LTR ERVL 1 458 -62 275 122 20 0 chr4 13292286 13292335 -189036012 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 227 204 0 23 chr4 13294008 13294052 -189034295 + L2 LINE L2 3268 3310 -3 343 359 26 0 chr4 13295233 13295350 -189032997 - L2 LINE L2 -6 3266 3147 1302 195 19 39 chr4 13295408 13295715 -189032632 - MLT1A1 LTR MaLR -64 301 1 1930 225 12 9 chr4 13295715 13296141 -189032206 - MLT1A1-int LTR MaLR 0 1735 1309 2436 242 48 10 chr4 13296519 13297147 -189031200 - MLT1A1-int LTR MaLR -1075 660 9 1394 229 49 9 chr4 13297150 13297500 -189030847 - MLT1A1 LTR MaLR -1 364 1 211 290 0 0 chr4 13297571 13297640 -189030707 + (TA)n Simple_repeat Simple_repeat 2 70 0 2262 138 0 0 chr4 13297667 13297979 -189030368 - AluSx SINE Alu 0 312 1 25 0 0 0 chr4 13298194 13298219 -189030128 + AT_rich Low_complexity Low_complexity 1 25 0 27 87 0 0 chr4 13298561 13298630 -189029717 + AT_rich Low_complexity Low_complexity 1 69 0 282 341 170 4 chr4 13299431 13299701 -189028646 - L3 LINE CR1 -113 1464 1150 269 331 167 36 chr4 13299720 13300134 -189028213 + L2 LINE L2 1940 2407 -907 276 360 9 0 chr4 13301538 13301649 -189026698 - MIR SINE MIR 0 262 151 186 226 57 38 chr4 13302213 13302266 -189026081 - MIR SINE MIR -87 175 122 583 329 68 30 chr4 13303278 13303752 -189024595 + LTR33 LTR ERVL 23 514 -7 608 327 90 46 chr4 13303755 13304189 -189024158 + L2 LINE L2 226 678 -2636 415 265 45 53 chr4 13304185 13304317 -189024030 - L2 LINE L2 0 3272 3142 * 538 321 39 25 chr4 13304393 13304673 -189023674 + L2 LINE L2 718 1001 -2313 535 295 145 45 chr4 13304944 13305320 -189023027 + L1ME3A LINE L1 5366 5812 -358 230 0 33 0 chr4 13305320 13305350 -189022997 + (TA)n Simple_repeat Simple_repeat 1 31 0 535 295 145 45 chr4 13305350 13305505 -189022842 + L1ME3A LINE L1 5812 5950 -220 186 43 0 0 chr4 13305524 13305547 -189022800 + (TA)n Simple_repeat Simple_repeat 2 24 0 228 238 29 0 chr4 13305717 13305822 -189022525 + (TA)n Simple_repeat Simple_repeat 1 108 0 450 237 65 14 chr4 13306055 13306194 -189022153 + MIR SINE MIR 99 244 -18 21 0 0 0 chr4 13306224 13306245 -189022102 + AT_rich Low_complexity Low_complexity 1 21 0 479 315 117 0 chr4 13306627 13306849 -189021498 + MIR SINE MIR 5 252 -10 346 351 70 0 chr4 13307452 13307594 -189020753 + MIR SINE MIR 31 181 -81 1069 243 105 27 chr4 13308125 13308457 -189019890 - MLT1F1 LTR MaLR -1 566 209 567 239 74 12 chr4 13308457 13308620 -189019727 + MLT1B LTR MaLR 1 173 -217 390 319 25 25 chr4 13308690 13308847 -189019500 - MLT1F1 LTR MaLR -385 157 1 255 283 50 17 chr4 13309935 13310055 -189018292 - MLT1L LTR MaLR -122 493 370 203 83 28 28 chr4 13310255 13310291 -189018056 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 352 277 31 8 chr4 13310417 13310547 -189017800 + MLT2E LTR ERVL 10 142 -486 225 0 0 0 chr4 13310549 13310574 -189017773 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 3784 76 2 8 chr4 13310574 13311103 -189017244 - L1PA8 LINE L1 -24 6148 5623 2155 122 7 3 chr4 13311409 13311697 -189016650 + AluSg SINE Alu 1 289 -21 333 357 51 26 chr4 13311748 13311997 -189016350 + MIR SINE MIR 6 258 -4 25 0 0 0 chr4 13312028 13312053 -189016294 + AT_rich Low_complexity Low_complexity 1 25 0 245 219 0 16 chr4 13312327 13312391 -189015956 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 2856 210 79 31 chr4 13312442 13312508 -189015839 + L1MC3 LINE L1 6793 6854 -931 920 115 11 11 chr4 13312508 13312682 -189015665 + (GGAA)n Simple_repeat Simple_repeat 2 175 0 2856 210 79 31 chr4 13312682 13312868 -189015479 + L1MC3 LINE L1 6854 7030 -755 231 88 0 0 chr4 13312868 13312902 -189015445 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 2856 210 79 31 chr4 13312902 13313594 -189014753 + L1MC3 LINE L1 7030 7784 -1 2231 123 3 0 chr4 13314320 13314621 -189013726 - AluSq SINE Alu -11 302 1 214 269 51 13 chr4 13314671 13314749 -189013598 - MIR SINE MIR -126 136 56 372 257 0 46 chr4 13314822 13314931 -189013416 + MIR SINE MIR 43 146 -116 2045 98 0 11 chr4 13314931 13315208 -189013139 + AluSx SINE Alu 1 274 -38 294 95 0 0 chr4 13316929 13316971 -189011376 + (A)n Simple_repeat Simple_repeat 1 42 0 1834 193 62 24 chr4 13317815 13318265 -189010082 - MLT1C LTR MaLR 0 467 1 2445 231 163 34 chr4 13318366 13319177 -189009170 + Charlie1 DNA MER1_type 47 1023 -1738 471 189 94 9 chr4 13319177 13319308 -189009039 + FLAM_A SINE Alu 1 140 0 2445 231 163 34 chr4 13319308 13319521 -189008826 + Charlie1 DNA MER1_type 1023 1207 -1554 2101 118 0 0 chr4 13319523 13319852 -189008495 + AluSx SINE Alu 3 331 0 3263 197 68 35 chr4 13319928 13320845 -189007502 + Charlie1 DNA MER1_type 1557 2503 -258 281 225 183 0 chr4 13320901 13321043 -189007304 + Charlie1 DNA MER1_type 2594 2761 0 276 302 23 0 chr4 13321482 13321568 -189006779 + MIR SINE MIR 175 262 0 254 314 16 2 chr4 13322553 13322626 -189005721 + MIR SINE MIR 19 92 -116 430 242 0 48 chr4 13322626 13322750 -189005597 - MLT1J LTR MaLR 0 511 394 696 271 111 33 chr4 13322885 13323191 -189005156 - MLT1J LTR MaLR -181 330 1 221 240 40 0 chr4 13323191 13323241 -189005106 + MIR SINE MIR 88 139 -123 317 316 14 21 chr4 13323876 13324030 -189004317 + MIR SINE MIR 19 172 -62 993 288 36 0 chr4 13324133 13324383 -189003964 + MIR SINE MIR 4 262 0 387 290 84 26 chr4 13325950 13326105 -189002242 + MIR SINE MIR 20 183 -79 261 83 0 0 chr4 13326541 13326577 -189001770 + (TG)n Simple_repeat Simple_repeat 2 37 0 253 328 216 15 chr4 13328709 13328913 -188999434 - MIR SINE MIR -6 256 12 195 366 53 15 chr4 13328946 13329077 -188999270 - MER5B DNA MER1_type -30 148 13 23 78 0 0 chr4 13329869 13329920 -188998427 + AT_rich Low_complexity Low_complexity 1 51 0 315 0 0 0 chr4 13329945 13329980 -188998367 + (TG)n Simple_repeat Simple_repeat 2 36 0 229 265 78 20 chr4 13331337 13331439 -188996908 - L3 LINE CR1 -91 1486 1379 310 289 141 6 chr4 13331896 13332052 -188996295 - L2 LINE L2 -17 3296 3120 1085 198 32 6 chr4 13332123 13332442 -188995905 - MER74C LTR ERVL -153 405 2 250 320 80 46 chr4 13333763 13333938 -188994409 - L3 LINE CR1 -2 1575 1395 2295 119 0 7 chr4 13334278 13334588 -188993759 - AluSx SINE Alu -4 308 1 239 259 164 9 chr4 13335614 13335730 -188992617 + MLT1L LTR MaLR 150 283 -332 2382 71 0 0 chr4 13336101 13336395 -188991952 - AluY SINE Alu -17 294 1 288 337 53 0 chr4 13336604 13336699 -188991648 + L2 LINE L2 3155 3254 -18 477 356 49 31 chr4 13337507 13337732 -188990615 - MIR SINE MIR -32 230 2 456 294 14 20 chr4 13337915 13338061 -188990286 - L3 LINE CR1 -7 1570 1426 227 232 91 30 chr4 13338196 13338295 -188990052 - L3 LINE CR1 -162 1415 1311 312 137 0 0 chr4 13338724 13338775 -188989572 + (T)n Simple_repeat Simple_repeat 1 51 0 572 277 27 38 chr4 13339408 13339592 -188988755 + MER20 DNA MER1_type 33 214 -5 202 393 0 0 chr4 13339597 13339658 -188988689 - MIR SINE MIR -180 82 22 695 227 0 0 chr4 13339701 13339829 -188988518 + FLAM_A SINE Alu 2 129 -4 203 133 22 0 chr4 13341030 13341075 -188987272 + GA-rich Low_complexity Low_complexity 2 47 0 337 247 52 0 chr4 13341111 13341208 -188987139 + MIR SINE MIR 63 164 -98 290 221 36 10 chr4 13341598 13341699 -188986648 + MER5A DNA MER1_type 15 134 -55 199 349 82 20 chr4 13342228 13342374 -188985973 - MIR SINE MIR -60 202 48 210 289 40 54 chr4 13342415 13342564 -188985783 - L3b LINE CR1 -191 1392 1246 317 283 40 79 chr4 13343174 13343261 -188985086 + MIR3 SINE MIR 38 118 -90 2495 101 14 25 chr4 13343261 13343629 -188984718 - THE1B LTR MaLR 0 364 1 317 283 40 79 chr4 13343629 13343693 -188984654 + MIR3 SINE MIR 118 183 -25 382 269 255 26 chr4 13344237 13344508 -188983839 + MLT1K LTR MaLR 143 475 -113 282 342 113 17 chr4 13344768 13344999 -188983348 + MIR SINE MIR 10 262 0 269 370 91 5 chr4 13345420 13345639 -188982708 + MIR SINE MIR 6 243 -19 399 298 0 0 chr4 13347150 13347244 -188981103 - L2 LINE L2 -4 3268 3175 225 170 0 0 chr4 13347279 13347332 -188981015 - LTR66 LTR ERVL -164 446 394 234 192 0 0 chr4 13347334 13347386 -188980961 + (CATATA)n Simple_repeat Simple_repeat 6 57 0 445 330 90 30 chr4 13347509 13347842 -188980505 - L2 LINE L2 -345 2969 2617 263 196 18 18 chr4 13347842 13347898 -188980449 + L2 LINE L2 3182 3237 -76 328 367 16 29 chr4 13348070 13348315 -188980032 - L2 LINE L2 -699 2615 2374 2030 198 23 23 chr4 13348443 13348873 -188979474 + MSTB1 LTR MaLR 3 432 0 530 360 42 25 chr4 13348904 13349304 -188979043 - L2 LINE L2 -945 2369 1963 1566 237 56 48 chr4 13349315 13349585 -188978762 - MLT1D LTR MaLR -2 503 226 2087 123 69 26 chr4 13349585 13349934 -188978413 + THE1B LTR MaLR 1 364 0 1566 237 56 48 chr4 13349934 13350161 -188978186 - MLT1D LTR MaLR -279 226 2 1632 233 105 49 chr4 13350315 13350962 -188977385 - MER21B LTR ERV1 -103 760 74 2851 74 11 0 chr4 13350962 13351342 -188977005 - L1PA8 LINE L1 -3 6169 5786 4981 92 24 0 chr4 13351351 13351927 -188976420 - L1PA8 LINE L1 -763 5383 4783 402 21 0 0 chr4 13351927 13351974 -188976373 + (TA)n Simple_repeat Simple_repeat 2 48 0 4981 92 24 0 chr4 13351974 13352162 -188976185 - L1PA8 LINE L1 -1363 4783 4601 5509 129 17 8 chr4 13352163 13353114 -188975233 + L1PA8 LINE L1 3661 4619 -1527 1686 144 93 0 chr4 13353453 13353723 -188974624 - AluSx SINE Alu -15 297 3 478 271 112 52 chr4 13353763 13353972 -188974375 + HAL1 LINE L1 992 1220 -1287 2186 166 84 7 chr4 13353972 13354400 -188973947 - LOR1b LTR ERV1 0 461 1 478 271 112 52 chr4 13354400 13354441 -188973906 + HAL1 LINE L1 1220 1257 -1250 328 300 135 30 chr4 13354693 13355056 -188973291 + MLT1J2 LTR MaLR 48 448 -2 322 308 23 58 chr4 13355580 13355752 -188972595 + HAL1b LINE L1 746 911 -437 2317 114 0 16 chr4 13356181 13356498 -188971849 - AluSq SINE Alu -1 312 1 23 0 0 0 chr4 13356801 13356824 -188971523 + AT_rich Low_complexity Low_complexity 1 23 0 249 33 0 0 chr4 13358345 13358375 -188969972 + (CA)n Simple_repeat Simple_repeat 2 31 0 243 61 0 0 chr4 13358376 13358409 -188969938 + (GA)n Simple_repeat Simple_repeat 2 34 0 2023 162 0 0 chr4 13358427 13358736 -188969611 + AluSx SINE Alu 1 309 -3 2556 247 51 5 chr4 13358829 13359097 -188969250 + MER82 DNA MER2_type 3 257 -396 1850 220 30 0 chr4 13359097 13359434 -188968913 + MER7A DNA MER2_type 1 345 -1 2556 247 51 5 chr4 13359434 13359749 -188968598 + MER82 DNA MER2_type 257 613 -40 721 162 92 0 chr4 13359754 13359896 -188968451 - MSTB1 LTR MaLR -117 315 161 6557 202 61 105 chr4 13359901 13361628 -188966719 - MSTB1-int LTR MaLR 0 1651 1 2330 148 46 62 chr4 13361628 13362067 -188966280 - MSTB1 LTR MaLR 0 432 1 277 178 0 0 chr4 13362068 13362113 -188966234 + MER82 DNA MER2_type 608 652 -1 495 305 115 13 chr4 13362129 13362355 -188965992 - MIR SINE MIR 0 262 14 216 246 136 73 chr4 13363220 13363330 -188965017 + MIR SINE MIR 20 136 -72 2676 170 47 2 chr4 13363743 13364190 -188964157 - MLT1C LTR MaLR 0 467 1 24 0 0 0 chr4 13364571 13364595 -188963752 + AT_rich Low_complexity Low_complexity 1 24 0 240 329 25 0 chr4 13364915 13364994 -188963353 + MIR SINE MIR 110 190 -72 200 211 0 0 chr4 13365069 13365107 -188963240 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 180 224 134 30 chr4 13365194 13365261 -188963086 - L3 LINE CR1 -117 1460 1387 * 538 307 42 46 chr4 13365258 13365496 -188962851 - MIR SINE MIR -18 244 8 582 318 10 5 chr4 13365520 13365747 -188962600 + MIR SINE MIR 25 251 -11 870 295 13 0 chr4 13366064 13366288 -188962059 - MIR SINE MIR -10 252 26 1306 186 82 128 chr4 13366530 13367030 -188961317 + MLT1D LTR MaLR 26 502 -3 2643 196 20 14 chr4 13367132 13367687 -188960660 + L1MB7 LINE L1 5618 6175 -9 286 140 0 40 chr4 13367762 13367812 -188960535 - MLT2C2 LTR ERVL 0 464 417 326 23 0 23 chr4 13367833 13367877 -188960470 + (TG)n Simple_repeat Simple_repeat 2 44 0 1915 219 77 22 chr4 13367879 13368331 -188960016 - MLT2B1 LTR ERVL -43 477 1 330 303 113 22 chr4 13368450 13368635 -188959712 - MIR SINE MIR -38 224 23 400 252 24 49 chr4 13368834 13368957 -188959390 + MIR SINE MIR 116 235 -27 925 157 22 16 chr4 13369047 13369232 -188959115 + L1MA6 LINE L1 6111 6296 -4 2277 89 0 25 chr4 13369438 13369754 -188958593 - AluY SINE Alu -3 308 1 272 252 19 56 chr4 13370441 13370548 -188957799 + MIR3 SINE MIR 101 203 -5 547 195 107 60 chr4 13372038 13372227 -188956120 - MLT1H LTR MaLR 0 582 378 282 295 0 38 chr4 13372608 13372713 -188955634 - MIR3 SINE MIR -1 207 107 255 300 71 41 chr4 13373987 13374157 -188954190 - MIR SINE MIR -65 197 23 24 32 0 0 chr4 13374367 13374398 -188953949 + AT_rich Low_complexity Low_complexity 1 31 0 397 237 222 39 chr4 13374427 13374684 -188953663 - L1MC4a LINE L1 -1870 5938 5635 531 267 47 47 chr4 13374685 13374876 -188953471 - MIR SINE MIR -41 221 31 501 303 133 8 chr4 13374907 13375171 -188953176 - L1MC4a LINE L1 -2161 5647 5351 697 297 83 14 chr4 13375423 13375508 -188952839 - L1ME3A LINE L1 -339 5831 5753 2192 113 3 0 chr4 13375508 13375809 -188952538 - AluSg SINE Alu -8 302 1 697 297 83 14 chr4 13375809 13376013 -188952334 - L1ME3A LINE L1 -417 5753 5522 247 211 248 8 chr4 13376020 13376153 -188952194 - L1ME3A LINE L1 -802 5344 5180 1099 289 90 16 chr4 13376155 13376653 -188951694 + L2 LINE L2 2149 2683 -631 1981 127 51 6 chr4 13376753 13377084 -188951263 + MER6 DNA MER2_type 520 865 0 2102 123 13 0 chr4 13377914 13378216 -188950131 + AluSx SINE Alu 1 306 -6 691 263 27 0 chr4 13378299 13378485 -188949862 + L2 LINE L2 2179 2369 -945 606 207 7 47 chr4 13378755 13378905 -188949442 - AluJb SINE Alu -4 308 165 642 167 0 0 chr4 13379020 13379110 -188949237 + AluSg/x SINE Alu 161 250 -62 1065 148 46 65 chr4 13379110 13379326 -188949021 + AluSq SINE Alu 85 296 -17 1512 107 30 17 chr4 13379326 13379560 -188948787 + MSTA LTR MaLR 192 428 0 549 297 92 4 chr4 13379635 13379874 -188948473 - MIR SINE MIR 0 262 3 1762 132 0 12 chr4 13380062 13380319 -188948028 + AluSg SINE Alu 1 254 -56 417 255 66 54 chr4 13380429 13380688 -188947659 + L1MC4 LINE L1 7781 8042 0 337 224 0 0 chr4 13381154 13381230 -188947117 + MER116 DNA Mariner 1 76 -4 415 291 152 0 chr4 13381242 13381393 -188946954 - L3 LINE CR1 -75 1502 1329 5899 147 43 49 chr4 13381527 13382775 -188945572 - L1M4c LINE L1 -4563 1821 581 507 137 0 0 chr4 13382887 13382960 -188945387 + MER66B LTR ERV1 414 486 0 899 311 33 0 chr4 13382982 13383226 -188945121 + MER82 DNA MER2_type 402 653 0 2323 113 0 3 chr4 13383352 13383663 -188944684 + AluSg SINE Alu 1 310 0 352 241 25 0 chr4 13383715 13383794 -188944553 - 5S rRNA rRNA -37 84 4 503 288 100 33 chr4 13383886 13384247 -188944100 - L1ME3 LINE L1 -201 5961 5577 1063 106 0 0 chr4 13384297 13384429 -188943918 + AluSg1 SINE Alu 1 132 -177 201 297 81 0 chr4 13385254 13385328 -188943019 + MIR SINE MIR 66 145 -117 182 282 239 0 chr4 13386350 13386421 -188941926 + L2 LINE L2 3175 3262 -10 277 271 79 57 chr4 13388179 13388319 -188940028 - MIR SINE MIR -117 145 3 750 191 51 25 chr4 13388646 13388773 -188939574 + LTR32 LTR ERVL 15 145 -326 2511 81 14 11 chr4 13388773 13389121 -188939226 + MER4B LTR ERV1 1 349 -261 240 135 0 0 chr4 13389121 13389158 -188939189 - Alu SINE Alu -7 295 259 2052 142 24 48 chr4 13389333 13389706 -188938641 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr4 13391933 13391954 -188936393 + AT_rich Low_complexity Low_complexity 1 21 0 205 216 68 40 chr4 13393760 13393834 -188934513 - MIR SINE MIR -105 157 82 1146 249 93 27 chr4 13394084 13394594 -188933753 + MER90 LTR ERV1 27 608 -6 912 217 175 18 chr4 13395075 13395361 -188932986 + L1ME3A LINE L1 5840 6170 0 1468 112 95 78 chr4 13395680 13395974 -188932373 - AluSx SINE Alu -12 300 2 275 354 55 24 chr4 13396702 13396956 -188931391 + L1MEd LINE L1 592 853 -5266 474 318 58 12 chr4 13396990 13397248 -188931099 + L1M4 LINE L1 3305 3574 -2572 1157 45 0 0 chr4 13397258 13397390 -188930957 + AluY SINE Alu 1 132 -179 2476 80 0 0 chr4 13397391 13397693 -188930654 + AluY SINE Alu 1 302 -9 187 284 90 15 chr4 13397917 13397984 -188930363 - MER5C DNA MER1_type -247 77 6 430 330 57 5 chr4 13397999 13398211 -188930136 + MIR SINE MIR 27 249 -13 408 40 0 0 chr4 13398288 13398338 -188930009 + (TG)n Simple_repeat Simple_repeat 1 50 0 270 270 114 58 chr4 13398479 13398908 -188929439 + L1MEd LINE L1 785 1237 -4882 2084 132 0 0 chr4 13399049 13399330 -188929017 + AluSq SINE Alu 13 293 -20 1911 103 58 58 chr4 13400121 13400247 -188928100 + AluSx SINE Alu 1 126 -186 225 94 0 0 chr4 13400247 13400279 -188928068 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 1911 103 58 58 chr4 13400279 13400463 -188927884 + AluSx SINE Alu 125 311 -1 526 157 0 56 chr4 13400893 13400982 -188927365 + FRAM SINE Alu 69 152 -24 671 293 29 37 chr4 13401023 13401269 -188927078 - MIR SINE MIR -17 245 2 497 326 39 6 chr4 13401292 13401470 -188926877 + L3 LINE CR1 627 810 -767 1246 188 39 0 chr4 13401486 13401694 -188926653 - MER20 DNA MER1_type -3 216 1 206 211 58 0 chr4 13401802 13401854 -188926493 + L3 LINE CR1 791 845 -732 1072 150 20 15 chr4 13401896 13402096 -188926251 + MSTB LTR MaLR 1 201 -225 336 115 33 16 chr4 13402096 13402157 -188926190 + AluS SINE Alu 1 62 -246 225 173 39 19 chr4 13402258 13402310 -188926037 - L1P LINE L1 -1142 5004 4952 1934 169 0 3 chr4 13402334 13402647 -188925700 + AluJo SINE Alu 1 312 0 244 236 179 32 chr4 13402977 13403100 -188925247 - L1P LINE L1 -2322 3824 3684 1523 283 54 16 chr4 13403231 13403676 -188924671 + LTR16B LTR ERVL 3 464 0 1968 103 4 21 chr4 13403716 13403997 -188924350 + AluSc SINE Alu 1 276 -33 1248 0 0 0 chr4 13404267 13404402 -188923945 + AluYb8 SINE Alu 179 313 -5 971 283 134 31 chr4 13404670 13405183 -188923164 - L2 LINE L2 -422 2892 2327 8142 22 0 0 chr4 13405532 13406490 -188921857 - L1PA4 LINE L1 -5 6150 5190 320 0 25 0 chr4 13407082 13407122 -188921225 + (TC)n Simple_repeat Simple_repeat 2 42 0 2554 177 6 47 chr4 13407130 13407600 -188920747 - MLT2B2 LTR ERVL -64 451 1 261 308 70 42 chr4 13407603 13407786 -188920561 - L2 LINE L2 -181 3091 2886 1732 172 0 26 chr4 13407786 13408088 -188920259 + AluJo SINE Alu 1 294 -18 261 308 70 42 chr4 13408088 13408187 -188920160 - L2 LINE L2 -386 2886 2791 221 300 0 0 chr4 13408949 13409029 -188919318 + MIR SINE MIR 183 262 0 222 62 0 0 chr4 13409216 13409248 -188919099 + (TG)n Simple_repeat Simple_repeat 1 32 0 253 286 44 22 chr4 13409322 13409421 -188918926 + MLT1I LTR MaLR 44 133 -276 239 350 117 25 chr4 13409840 13410003 -188918344 - MIR3 SINE MIR -21 187 10 1096 141 12 0 chr4 13410998 13411168 -188917179 - AluSg/x SINE Alu -11 299 128 1387 160 48 111 chr4 13411369 13411701 -188916646 + AluJo SINE Alu 1 311 -1 1335 198 171 56 chr4 13412001 13412451 -188915896 - MLT1D LTR MaLR -3 502 1 558 209 87 51 chr4 13412886 13413140 -188915207 + L1MC5 LINE L1 7644 7906 -55 24 53 0 0 chr4 13413386 13413424 -188914923 + AT_rich Low_complexity Low_complexity 1 38 0 482 228 117 21 chr4 13413803 13413948 -188914399 - MIR SINE MIR -38 224 66 995 181 98 5 chr4 13414033 13414238 -188914109 + AluJb SINE Alu 2 225 -87 7588 53 3 3 chr4 13414250 13415196 -188913151 + L1PA7 LINE L1 5209 6154 0 548 114 13 0 chr4 13416009 13416088 -188912259 + MADE1 DNA Mariner 1 80 0 567 283 148 70 chr4 13416088 13416404 -188911943 - MLT1G1 LTR MaLR -71 484 130 1655 223 128 38 chr4 13416404 13416443 -188911904 - MLT2B1 LTR ERVL 0 520 486 441 54 0 0 chr4 13416443 13416499 -188911848 + (TG)n Simple_repeat Simple_repeat 2 57 0 1655 223 128 38 chr4 13416499 13416934 -188911413 - MLT2B1 LTR ERVL -34 486 3 567 283 148 70 chr4 13416934 13417022 -188911325 - MLT1G1 LTR MaLR -425 130 50 267 342 24 13 chr4 13417069 13417186 -188911161 + MER5A DNA MER1_type 59 169 -9 385 262 106 14 chr4 13417425 13417566 -188910781 - L1MC3 LINE L1 -3 7782 7629 216 174 0 82 chr4 13417620 13417718 -188910629 + (TATAA)n Simple_repeat Simple_repeat 4 93 0 1694 209 48 15 chr4 13417719 13418025 -188910322 - L1MD3 LINE L1 -162 7833 7510 210 118 0 0 chr4 13418025 13418059 -188910288 + (CATAT)n Simple_repeat Simple_repeat 4 37 0 1694 209 48 15 chr4 13418059 13418149 -188910198 - L1MD3 LINE L1 -485 7510 7424 578 202 28 0 chr4 13418149 13418258 -188910089 - MLT1F1 LTR MaLR -420 147 36 24 0 0 0 chr4 13418654 13418678 -188909669 + AT_rich Low_complexity Low_complexity 1 24 0 1277 244 56 44 chr4 13419975 13420405 -188907942 + MLT1C LTR MaLR 17 451 -16 967 229 14 36 chr4 13420675 13420898 -188907449 - MER20 DNA MER1_type -1 218 1 2730 78 91 10 chr4 13421016 13421376 -188906971 + MLT2A1 LTR ERVL 16 412 -32 216 0 0 0 chr4 13421376 13421400 -188906947 + (TA)n Simple_repeat Simple_repeat 2 25 0 2730 78 91 10 chr4 13421400 13421436 -188906911 + MLT2A1 LTR ERVL 412 444 0 320 287 133 0 chr4 13421860 13422003 -188906344 - MER103 DNA DNA -3 163 2 244 347 58 0 chr4 13422190 13422311 -188906036 + MER102b DNA MER1_type 188 315 -26 345 129 0 198 chr4 13422825 13422941 -188905406 + L1MA9 LINE L1 6182 6274 -38 786 295 63 31 chr4 13424433 13424994 -188903353 - L2 LINE L2 -31 3282 2708 182 315 103 48 chr4 13425085 13425231 -188903116 + L2 LINE L2 3111 3264 -8 31 26 0 0 chr4 13426651 13426689 -188901658 + AT_rich Low_complexity Low_complexity 1 38 0 222 318 0 15 chr4 13426824 13426890 -188901457 - MIR SINE MIR -120 142 78 258 250 0 0 chr4 13427185 13427257 -188901090 + CT-rich Low_complexity Low_complexity 1 72 0 285 248 64 46 chr4 13428451 13428560 -188899787 + MIR SINE MIR 20 130 -78 1040 303 96 12 chr4 13428803 13429219 -188899128 - L2 LINE L2 -4 3309 2859 1556 186 17 24 chr4 13431130 13431421 -188896926 + AluJo SINE Alu 1 289 -23 249 33 0 0 chr4 13432546 13432576 -188895771 + (TCCA)n Simple_repeat Simple_repeat 1 30 0 193 378 112 0 chr4 13432577 13432675 -188895672 - L2 LINE L2 -6 3266 3158 217 296 89 45 chr4 13433241 13433420 -188894927 + MIR SINE MIR 56 242 -20 796 287 16 12 chr4 13433557 13433811 -188894536 + MIR SINE MIR 2 256 -6 219 385 18 0 chr4 13434519 13434628 -188893719 + MIR SINE MIR 43 153 -55 290 305 75 80 chr4 13434655 13434855 -188893492 - MIR SINE MIR -18 244 46 207 204 0 0 chr4 13434971 13435020 -188893327 + CT-rich Low_complexity Low_complexity 2 50 0 245 296 108 54 chr4 13435124 13435310 -188893037 + L2 LINE L2 3117 3312 -1 247 339 133 14 chr4 13435344 13435562 -188892785 + L3 LINE CR1 1311 1554 -23 186 246 277 0 chr4 13435619 13435684 -188892663 - L2 LINE L2 -2 3270 3188 350 312 87 35 chr4 13435714 13435887 -188892460 - MIR SINE MIR -27 235 54 206 341 37 30 chr4 13436492 13436557 -188891790 + MIR3 SINE MIR 25 88 -120 2043 196 25 6 chr4 13436557 13436915 -188891432 - MLT1A1 LTR MaLR 0 365 1 206 341 37 30 chr4 13436915 13436984 -188891363 + MIR3 SINE MIR 88 160 -48 297 353 45 7 chr4 13437784 13437951 -188890396 + MIR SINE MIR 64 236 -26 268 360 44 26 chr4 13438368 13438482 -188889865 - L2 LINE L2 -5 3267 3152 268 230 30 60 chr4 13438799 13438899 -188889448 - MIR SINE MIR -112 150 54 271 304 68 48 chr4 13439553 13439803 -188888544 + L2 LINE L2 2507 2761 -553 251 347 8 16 chr4 13439958 13440082 -188888265 + L2 LINE L2 2942 3064 -208 2443 93 3 0 chr4 13440502 13440812 -188887535 + AluSp SINE Alu 1 311 -2 532 329 82 59 chr4 13440867 13441651 -188886696 + L2 LINE L2 563 1364 -1950 2471 58 0 7 chr4 13441753 13442048 -188886299 + AluY SINE Alu 1 293 -18 309 333 26 19 chr4 13442532 13442688 -188885659 + L2 LINE L2 2506 2662 -652 938 142 321 28 chr4 13442711 13442822 -188885525 - Tigger3b DNA MER2_type -1797 1232 1155 2853 107 5 0 chr4 13442822 13443195 -188885152 + THE1C LTR MaLR 1 375 0 938 142 321 28 chr4 13443195 13443301 -188885046 - Tigger3b DNA MER2_type -1874 1155 951 968 106 38 0 chr4 13443309 13443441 -188884906 + L1PA11 LINE L1 6034 6170 -4 189 107 0 0 chr4 13443542 13443570 -188884777 + (TATATG)n Simple_repeat Simple_repeat 1 28 0 264 239 23 23 chr4 13443571 13443659 -188884688 - L1MC4 LINE L1 -1341 6701 6614 237 219 0 83 chr4 13443586 13443682 -188884665 + L1MC4 LINE L1 6615 6702 -1340 * 1413 98 0 25 chr4 13443682 13443885 -188884462 - AluY SINE Alu -113 198 1 4809 132 76 35 chr4 13444266 13444329 -188884018 - Tigger3b DNA MER2_type -2080 948 889 203 61 30 0 chr4 13444329 13444362 -188883985 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 4809 132 76 35 chr4 13444362 13444449 -188883898 - Tigger3b DNA MER2_type -2139 889 807 2178 119 0 17 chr4 13444449 13444744 -188883603 + AluSx SINE Alu 1 290 -22 4809 132 76 35 chr4 13444744 13445296 -188883051 - Tigger3b DNA MER2_type -2221 807 197 2238 117 0 13 chr4 13445296 13445605 -188882742 - AluSq SINE Alu -8 305 1 4809 132 76 35 chr4 13445605 13445811 -188882536 - Tigger3b DNA MER2_type -2831 197 1 2440 118 22 27 chr4 13445839 13446205 -188882142 + THE1B LTR MaLR 1 364 0 12011 95 21 3 chr4 13446205 13447756 -188880591 + THE1B-int LTR MaLR 1 1580 0 978 138 13 7 chr4 13447774 13447926 -188880421 + THE1B LTR MaLR 212 364 0 1318 278 74 15 chr4 13447926 13448465 -188879882 + L2 LINE L2 2731 3313 0 198 304 18 0 chr4 13448511 13448567 -188879780 - L2 LINE L2 0 3313 3257 316 202 31 10 chr4 13448793 13448890 -188879457 - MIR3 SINE MIR -22 186 86 545 317 49 32 chr4 13449657 13449903 -188878444 - MIR SINE MIR -10 252 3 276 246 92 0 chr4 13449903 13449959 -188878388 - L2 LINE L2 -42 3230 3169 2824 276 137 22 chr4 13450295 13451448 -188876899 - L2 LINE L2 -1771 1543 258 318 311 51 50 chr4 13451707 13451961 -188876386 + L2 LINE L2 2798 3053 -219 195 339 119 38 chr4 13452252 13452571 -188875776 + L2 LINE L2 2016 2360 -954 232 187 41 0 chr4 13452583 13452706 -188875641 + (TA)n Simple_repeat Simple_repeat 2 129 0 318 250 21 21 chr4 13452730 13452826 -188875521 + L1MC4 LINE L1 6610 6705 -1337 283 336 259 21 chr4 13452986 13453361 -188874986 + L2 LINE L2 2807 3270 -2 1531 140 19 30 chr4 13453372 13453636 -188874711 - Tigger2 DNA MER2_type -10 2708 2448 38 22 0 0 chr4 13453665 13453710 -188874637 + AT_rich Low_complexity Low_complexity 1 45 0 4571 125 24 36 chr4 13453716 13454483 -188873864 - Tigger2 DNA MER2_type -1961 757 1 2637 50 0 0 chr4 13454964 13455264 -188873083 + AluY SINE Alu 1 300 -11 279 206 27 41 chr4 13455282 13455355 -188872992 - MIR SINE MIR -108 154 83 2153 101 7 0 chr4 13455660 13455947 -188872400 + AluSq SINE Alu 1 289 -24 26 30 0 0 chr4 13457493 13457526 -188870821 + AT_rich Low_complexity Low_complexity 1 33 0 186 43 0 0 chr4 13457877 13457900 -188870447 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 595 290 75 23 chr4 13457970 13458184 -188870163 + MIR SINE MIR 20 244 -18 413 167 0 12 chr4 13458233 13458317 -188870030 + CT-rich Low_complexity Low_complexity 4 86 0 426 195 0 0 chr4 13458320 13458402 -188869945 - Cheshire DNA MER1_type -266 2154 2073 287 136 99 0 chr4 13458377 13458458 -188869889 - Cheshire DNA MER1_type -2265 155 67 * 1609 180 19 60 chr4 13458465 13458711 -188869636 - MLT1A1 LTR MaLR -12 353 125 2771 98 20 3 chr4 13458711 13459067 -188869280 + THE1B LTR MaLR 3 364 0 1609 180 19 60 chr4 13459067 13459186 -188869161 - MLT1A1 LTR MaLR -240 125 3 424 74 0 0 chr4 13459206 13459260 -188869087 + MER57A LTR ERV1 1 54 -349 1917 123 57 92 chr4 13459260 13459649 -188868698 - THE1C LTR MaLR 0 375 1 1640 77 5 14 chr4 13459649 13459870 -188868477 - THE1C-int LTR MaLR 0 1580 1362 1022 198 80 0 chr4 13459884 13460121 -188868226 + Cheshire DNA MER1_type 130 2419 -1 185 288 75 38 chr4 13460522 13460602 -188867745 + L2 LINE L2 3223 3305 -8 1663 228 42 5 chr4 13461178 13461560 -188866787 - MSTD LTR MaLR 0 396 1 528 245 0 0 chr4 13461604 13462086 -188866261 + (CA)n Simple_repeat Simple_repeat 1 482 0 399 316 102 27 chr4 13462193 13462418 -188865929 - MIR SINE MIR -19 243 2 210 216 0 0 chr4 13462781 13462855 -188865492 + (CA)n Simple_repeat Simple_repeat 2 75 0 433 300 14 38 chr4 13463323 13463533 -188864814 + MIR SINE MIR 58 262 0 233 325 125 0 chr4 13463765 13463845 -188864502 - L2 LINE L2 -19 3253 3164 11859 179 7 10 chr4 13463845 13466934 -188861413 - L1P3 LINE L1 -2782 3679 582 13888 26 1 0 chr4 13466934 13469342 -188859005 + L1PA3 LINE L1 3746 6155 0 11859 179 7 10 chr4 13469342 13469921 -188858426 - L1P3 LINE L1 -5879 582 3 371 263 75 15 chr4 13469968 13470101 -188858246 + MIR SINE MIR 40 180 -82 304 333 33 25 chr4 13470376 13470541 -188857806 + MIR SINE MIR 19 180 -28 197 250 50 0 chr4 13471192 13471252 -188857095 + MIR SINE MIR 179 241 -21 388 216 43 150 chr4 13471723 13471977 -188856370 - L2 LINE L2 -6 3307 3081 904 152 129 5 chr4 13471983 13472200 -188856147 - L1MC2 LINE L1 -2 6342 6099 2259 82 0 4 chr4 13472209 13472515 -188855832 - AluSc SINE Alu 0 305 1 257 277 176 48 chr4 13472675 13472964 -188855383 + LTR16C LTR ERVL 151 476 -15 345 269 99 50 chr4 13472966 13473107 -188855240 + MIR SINE MIR 114 261 -1 411 309 22 29 chr4 13473164 13473303 -188855044 - MIR SINE MIR -65 197 60 266 279 58 39 chr4 13473364 13473468 -188854879 - MIR SINE MIR -71 137 32 607 209 43 139 chr4 13474364 13474622 -188853725 - MIR SINE MIR -19 243 11 253 286 42 67 chr4 13474626 13474745 -188853602 - MIR3 SINE MIR -23 185 70 213 284 23 0 chr4 13475115 13475203 -188853144 + (TG)n Simple_repeat Simple_repeat 2 91 0 247 397 116 29 chr4 13475664 13475906 -188852441 - L2 LINE L2 0 3272 3010 21 0 0 0 chr4 13477575 13477596 -188850751 + AT_rich Low_complexity Low_complexity 1 21 0 437 292 76 67 chr4 13477953 13478285 -188850062 + L1MEc LINE L1 1412 1801 -775 199 403 0 0 chr4 13478994 13479066 -188849281 + L2 LINE L2 3134 3205 -67 211 291 51 13 chr4 13479263 13479342 -188849005 + L2 LINE L2 3176 3257 -56 221 297 102 47 chr4 13481507 13481635 -188846712 - L2 LINE L2 -1 3271 3137 287 381 114 19 chr4 13481872 13482250 -188846097 - L2 LINE L2 -650 2664 2251 298 276 13 0 chr4 13482293 13482369 -188845978 - LTR16C LTR ERVL -222 269 193 233 242 30 61 chr4 13482577 13482643 -188845704 - L2 LINE L2 0 3272 3209 2035 120 10 29 chr4 13483441 13483749 -188844598 + AluSx SINE Alu 1 302 -10 201 269 260 39 chr4 13483860 13483964 -188844383 + MIR SINE MIR 9 135 -127 355 353 53 38 chr4 13484029 13484369 -188843978 + L2 LINE L2 1550 1894 -1420 470 261 36 26 chr4 13485267 13485462 -188842885 - HAL1 LINE L1 -78 2429 2233 324 179 0 0 chr4 13485515 13485582 -188842765 - MER116 DNA Mariner 0 80 14 32 43 0 0 chr4 13485717 13485763 -188842584 + AT_rich Low_complexity Low_complexity 1 46 0 2239 130 11 0 chr4 13485763 13486116 -188842231 - L1PB4 LINE L1 -7 6852 6496 198 0 0 0 chr4 13486116 13486138 -188842209 + (TG)n Simple_repeat Simple_repeat 2 23 0 207 204 0 0 chr4 13486211 13486255 -188842092 + (CATA)n Simple_repeat Simple_repeat 3 46 0 7445 217 27 90 chr4 13486257 13488028 -188840319 - L1PB4 LINE L1 -367 6492 4611 397 57 0 0 chr4 13488028 13488081 -188840266 - MADE1 DNA Mariner 0 80 28 7445 217 27 90 chr4 13488081 13488256 -188840091 - L1PB4 LINE L1 -2248 4611 4427 369 94 0 47 chr4 13488256 13488320 -188840027 - MADE1 DNA Mariner -17 63 3 7445 217 27 90 chr4 13488320 13490158 -188838189 - L1PB4 LINE L1 -2432 4427 2848 253 266 110 0 chr4 13490228 13490337 -188838010 - L1PB4 LINE L1 -4004 2845 2725 687 254 106 72 chr4 13490374 13490726 -188837621 - L1PB4 LINE L1 -525 2685 2311 1748 217 43 71 chr4 13490726 13491260 -188837087 - MLT2B1 LTR ERVL 0 520 2 687 254 106 72 chr4 13491260 13491379 -188836968 - L1PB4 LINE L1 -899 2311 2198 342 354 186 7 chr4 13491389 13491976 -188836371 - L1PB4 LINE L1 -1706 1504 813 1751 210 36 20 chr4 13491982 13492372 -188835975 + MSTD LTR MaLR 1 396 0 5467 243 87 34 chr4 13492374 13494021 -188834326 + MSTD-int LTR MaLR 2 1735 0 1145 199 120 38 chr4 13494023 13494211 -188834136 + MSTD LTR MaLR 4 226 -170 1931 150 0 43 chr4 13494211 13494537 -188833810 - AluSx SINE Alu 0 312 1 1145 199 120 38 chr4 13494537 13494639 -188833708 + MSTD LTR MaLR 226 318 -78 242 256 70 0 chr4 13494640 13494726 -188833621 - L1PB4 LINE L1 -2403 807 716 24 32 0 0 chr4 13495112 13495143 -188833204 + AT_rich Low_complexity Low_complexity 1 31 0 662 308 79 31 chr4 13495397 13495877 -188832470 - MLT1J LTR MaLR -8 503 1 41 48 0 0 chr4 13496487 13496549 -188831798 + AT_rich Low_complexity Low_complexity 1 62 0 513 266 118 20 chr4 13496674 13496971 -188831376 - LTR16A LTR ERVL -6 444 119 437 289 53 11 chr4 13497362 13497533 -188830814 + MIR SINE MIR 19 205 -3 195 301 55 0 chr4 13498723 13498796 -188829551 - L2 LINE L2 0 3313 3237 1143 273 101 67 chr4 13499092 13499657 -188828690 - MER45C DNA AcHobo -369 584 1 226 339 120 16 chr4 13500082 13500265 -188828082 + L2 LINE L2 2170 2371 -943 190 175 50 0 chr4 13500359 13500399 -188827948 - L2 LINE L2 -10 3262 3221 500 236 9 155 chr4 13500435 13500686 -188827661 - MIR SINE MIR -19 243 31 1882 135 162 5 chr4 13501040 13501410 -188826937 + MSTA LTR MaLR 1 428 0 333 262 98 11 chr4 13502338 13502521 -188825826 + MLT1K LTR MaLR 376 574 -14 1901 162 0 16 chr4 13502531 13502839 -188825508 + AluJb SINE Alu 1 303 -9 259 151 41 27 chr4 13503296 13503369 -188824978 - L1PA16 LINE L1 0 6166 6093 2080 142 30 38 chr4 13503487 13503854 -188824493 + THE1B LTR MaLR 1 364 0 446 150 0 0 chr4 13504123 13504203 -188824144 - MADE1 DNA Mariner 0 80 1 553 211 0 0 chr4 13504952 13505047 -188823300 - FLAM_A SINE Alu -20 122 28 2592 116 52 10 chr4 13505118 13505525 -188822822 + MSTA LTR MaLR 5 428 0 268 277 75 50 chr4 13505659 13505676 -188822671 + MIR SINE MIR 59 74 -188 1671 236 20 0 chr4 13505676 13506032 -188822315 + MLT1A1 LTR MaLR 3 365 0 268 277 75 50 chr4 13506032 13506173 -188822174 + MIR SINE MIR 74 221 -41 1551 220 96 25 chr4 13506185 13506621 -188821726 - MLT1C LTR MaLR 0 467 1 294 73 0 0 chr4 13507836 13507877 -188820470 + (CA)n Simple_repeat Simple_repeat 1 41 0 428 302 48 8 chr4 13508086 13508212 -188820135 + L3 LINE CR1 1361 1491 -86 21 0 0 0 chr4 13508214 13508235 -188820112 + AT_rich Low_complexity Low_complexity 1 21 0 5492 113 5 2 chr4 13508235 13509106 -188819241 - L1PB1 LINE L1 -2 6149 5277 203 380 38 0 chr4 13509123 13509202 -188819145 - L2 LINE L2 -4 3268 3187 324 291 96 94 chr4 13509773 13510209 -188818138 - MLT1J2 LTR MaLR -13 437 1 561 327 5 53 chr4 13511488 13511500 -188816847 + MIR3 SINE MIR 5 16 -192 2822 201 7 7 chr4 13511500 13512058 -188816289 + MER74A LTR ERVL 1 558 0 561 327 5 53 chr4 13512058 13512253 -188816094 + MIR3 SINE MIR 16 202 -6 387 283 43 0 chr4 13512310 13512402 -188815945 - L2 LINE L2 -9 3263 3168 1082 164 23 9 chr4 13514417 13514631 -188813716 - Tigger1 DNA MER2_type 0 2418 2202 683 189 0 16 chr4 13514627 13514754 -188813593 - Tigger1 DNA MER2_type -2267 151 27 * 864 206 11 16 chr4 13515152 13515336 -188813011 + MER5A DNA MER1_type 3 185 -4 491 322 149 32 chr4 13515765 13516370 -188811977 - L2 LINE L2 -77 3236 2565 799 155 0 63 chr4 13516787 13516929 -188811418 - FLAM_C SINE Alu 0 133 1 1835 152 46 30 chr4 13517158 13517527 -188810820 + THE1C LTR MaLR 1 375 0 6297 133 9 41 chr4 13517527 13518660 -188809687 + THE1C-int LTR MaLR 1 1097 -483 1097 160 176 46 chr4 13518667 13518973 -188809374 + THE1B LTR MaLR 15 360 -4 232 121 69 52 chr4 13518985 13519043 -188809304 + L1ME1 LINE L1 6092 6150 -16 1076 288 199 18 chr4 13519175 13519839 -188808508 - L2 LINE L2 -1496 1818 1035 1360 195 66 31 chr4 13519875 13520224 -188808123 + MLT1A2 LTR MaLR 1 361 -13 767 308 63 61 chr4 13520238 13520663 -188807684 + L2 LINE L2 2888 3313 0 233 284 34 23 chr4 13521687 13521775 -188806572 - L2 LINE L2 -5 3267 3179 208 357 9 45 chr4 13522121 13522233 -188806114 + MIR SINE MIR 37 144 -64 744 221 6 18 chr4 13523358 13523521 -188804826 + MIR SINE MIR 74 234 -28 2156 97 0 0 chr4 13523571 13523838 -188804509 + AluSx SINE Alu 38 304 -8 649 260 85 0 chr4 13524376 13524553 -188803794 + MIR SINE MIR 71 262 0 38 68 0 0 chr4 13524556 13524629 -188803718 + AT_rich Low_complexity Low_complexity 1 73 0 2455 44 30 0 chr4 13525015 13525310 -188803037 + AluY SINE Alu 1 304 -7 3132 135 18 71 chr4 13525925 13526404 -188801943 - L1MB7 LINE L1 0 6184 5748 2512 68 0 3 chr4 13526404 13526714 -188801633 - AluY SINE Alu -2 309 1 3132 135 18 71 chr4 13526714 13526893 -188801454 - L1MB7 LINE L1 -436 5748 5561 194 311 48 99 chr4 13526942 13527126 -188801221 - L2 LINE L2 -829 2485 2320 1977 175 7 0 chr4 13527126 13527435 -188800912 - AluSx SINE Alu -1 311 1 194 311 48 99 chr4 13527435 13527543 -188800804 - L2 LINE L2 -994 2320 2208 359 265 0 31 chr4 13527979 13528077 -188800270 + L2 LINE L2 3213 3307 -6 2506 60 3 0 chr4 13528172 13528474 -188799873 + AluY SINE Alu 1 303 -8 390 232 36 0 chr4 13528611 13528723 -188799624 + MER103 DNA DNA 8 123 -43 245 233 0 0 chr4 13528772 13528815 -188799532 + (CGTG)n Simple_repeat Simple_repeat 1 43 0 218 326 109 14 chr4 13529751 13529889 -188798458 + MIR SINE MIR 103 253 -9 263 164 73 0 chr4 13530153 13530208 -188798139 - MLT1K LTR MaLR 0 588 530 2159 137 0 0 chr4 13530224 13530537 -188797810 + AluSq SINE Alu 1 313 0 368 322 15 49 chr4 13530653 13530858 -188797489 - MLT1K LTR MaLR -166 422 225 316 333 164 12 chr4 13531260 13531425 -188796922 - MIR3 SINE MIR 0 208 19 239 298 60 71 chr4 13532980 13533148 -188795199 + MIR SINE MIR 19 184 -78 645 236 111 10 chr4 13533178 13533386 -188794961 + MIR SINE MIR 21 249 -13 4280 248 62 41 chr4 13534436 13537868 -188790479 + L1MA9 LINE L1 357 3436 -2598 225 236 18 0 chr4 13537869 13537924 -188790423 + (TA)n Simple_repeat Simple_repeat 1 56 0 314 290 0 21 chr4 13537924 13538017 -188790330 + L1MC4 LINE L1 6613 6703 -1339 432 279 0 0 chr4 13538024 13538196 -188790151 + (TA)n Simple_repeat Simple_repeat 1 172 0 245 315 0 11 chr4 13538199 13538377 -188789970 + (TATG)n Simple_repeat Simple_repeat 2 177 0 241 318 0 0 chr4 13538384 13538450 -188789897 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 321 309 0 0 chr4 13538456 13538631 -188789716 + (TA)n Simple_repeat Simple_repeat 2 176 0 7661 183 32 23 chr4 13538655 13540973 -188787374 + L1MA9 LINE L1 3467 5796 -404 1064 293 77 9 chr4 13540973 13541652 -188786695 - L2 LINE L2 -22 3291 2560 296 324 163 76 chr4 13541660 13541992 -188786355 + L3 LINE CR1 589 891 -686 2286 114 0 0 chr4 13541992 13542299 -188786048 + AluSx SINE Alu 1 307 -5 296 324 163 76 chr4 13542299 13542556 -188785791 + L3 LINE CR1 891 1229 -348 352 68 0 108 chr4 13542597 13542671 -188785676 + MER41A LTR ERV1 401 466 -88 365 333 86 20 chr4 13542682 13542880 -188785467 + L3 LINE CR1 1266 1476 -101 197 362 29 0 chr4 13545250 13545319 -188783028 + L2 LINE L2 3201 3271 -1 480 301 54 46 chr4 13546745 13546984 -188781363 + MIR SINE MIR 22 262 0 320 295 36 72 chr4 13546977 13547116 -188781231 - MIR SINE MIR -108 154 21 * 2129 127 7 0 chr4 13547920 13548220 -188780127 + AluSq SINE Alu 1 302 -11 255 61 0 0 chr4 13548820 13548853 -188779494 + (TC)n Simple_repeat Simple_repeat 2 34 0 252 184 0 118 chr4 13548856 13548932 -188779415 - U6 snRNA snRNA -3 104 38 419 174 0 0 chr4 13548936 13549005 -188779342 - U6 snRNA snRNA -37 70 2 710 328 36 4 chr4 13549184 13549437 -188778910 - MIR SINE MIR -1 261 1 3218 190 36 88 chr4 13549708 13551080 -188777267 - L1ME2 LINE L1 -11 6153 4843 352 199 55 75 chr4 13551129 13551275 -188777072 - L1ME2 LINE L1 -2290 3856 3714 185 323 21 43 chr4 13551766 13551859 -188776488 + L3 LINE CR1 1473 1563 -14 409 376 41 5 chr4 13552328 13552522 -188775825 - MIR3 SINE MIR -4 204 4 1009 285 36 18 chr4 13552860 13552943 -188775404 - LTR16C LTR ERVL -7 484 404 1114 181 123 77 chr4 13552943 13553292 -188775055 - MLT1A1 LTR MaLR 0 365 1 1009 285 36 18 chr4 13553292 13553541 -188774806 - LTR16C LTR ERVL -87 404 146 201 154 0 0 chr4 13554005 13554044 -188774303 + (TTTAA)n Simple_repeat Simple_repeat 4 42 0 201 270 114 93 chr4 13554253 13554490 -188773857 + MIR3 SINE MIR 2 243 -19 188 277 0 0 chr4 13554491 13554538 -188773809 - L2 LINE L2 -4 3268 3222 464 286 107 40 chr4 13554950 13555303 -188773044 + LTR16A1 LTR ERVL 73 457 0 537 259 0 44 chr4 13555441 13555599 -188772748 - L2 LINE L2 0 3313 3163 2586 100 5 19 chr4 13555781 13556150 -188772197 + THE1B LTR MaLR 1 364 0 884 246 120 22 chr4 13556201 13556354 -188771993 - MLT1F1 LTR MaLR 0 567 430 207 69 0 0 chr4 13556354 13556383 -188771964 + (CTGGGG)n Simple_repeat Simple_repeat 4 32 0 884 246 120 22 chr4 13556383 13556586 -188771761 - MLT1F1 LTR MaLR -137 430 176 273 128 0 0 chr4 13556586 13556633 -188771714 + (GGGAA)n Simple_repeat Simple_repeat 4 50 0 326 296 53 13 chr4 13556659 13556811 -188771536 - MLT1F1 LTR MaLR -435 158 1 217 281 4 16 chr4 13557303 13557375 -188770972 + MIR SINE MIR 68 140 -68 2355 99 0 0 chr4 13557427 13557731 -188770616 + AluSp SINE Alu 1 304 -9 1834 175 5 72 chr4 13558419 13558837 -188769510 + MLT1B LTR MaLR 1 390 0 230 355 136 24 chr4 13558943 13559184 -188769163 - L2 LINE L2 -256 3057 2801 243 357 64 35 chr4 13559604 13559775 -188768572 + L2 LINE L2 2992 3167 -105 1660 246 53 9 chr4 13559864 13560394 -188767953 + L1ME1 LINE L1 5623 6159 -7 3109 100 9 0 chr4 13561590 13562020 -188766327 + MER57B LTR ERV1 1 434 0 430 267 55 89 chr4 13562040 13562242 -188766105 - MIR3 SINE MIR -10 198 4 2561 137 108 12 chr4 13563007 13563498 -188764849 - L1PA16 LINE L1 -6 6160 5623 1671 129 4 0 chr4 13563498 13563777 -188764570 + L1PA16 LINE L1 5318 5597 -569 3344 53 0 12 chr4 13563797 13564227 -188764120 - L1PA7 LINE L1 -8 6146 5722 421 318 33 47 chr4 13564828 13564889 -188763458 - L2 LINE L2 -556 2758 2698 1725 178 0 32 chr4 13564889 13565204 -188763143 + AluJo SINE Alu 1 305 -7 421 318 33 47 chr4 13565204 13565353 -188762994 - L2 LINE L2 -616 2698 2551 200 318 16 0 chr4 13566261 13566324 -188762023 + MIR SINE MIR 79 142 -120 274 336 8 67 chr4 13566498 13566632 -188761715 + MIR SINE MIR 20 145 -63 11044 204 36 30 chr4 13566989 13571425 -188756922 - L1MA9 LINE L1 -10 6538 2055 449 283 45 30 chr4 13571944 13572201 -188756146 - L1MA9 LINE L1 -5716 597 267 1933 126 73 22 chr4 13572330 13572687 -188755660 + THE1C LTR MaLR 1 375 0 2286 94 0 0 chr4 13572771 13573069 -188755278 + AluSg1 SINE Alu 1 298 -11 203 0 37 0 chr4 13573072 13573099 -188755248 + (TAA)n Simple_repeat Simple_repeat 2 29 0 209 239 30 30 chr4 13573159 13573226 -188755121 - L2 LINE L2 -5 3267 3201 716 282 5 5 chr4 13573958 13574146 -188754201 - MIR SINE MIR -71 191 4 202 354 90 45 chr4 13574218 13574396 -188753951 - L2 LINE L2 -16 3256 3071 217 364 91 0 chr4 13574412 13574522 -188753825 - MIR SINE MIR -64 144 25 228 384 30 8 chr4 13574564 13574697 -188753650 + MIR3 SINE MIR 73 208 0 795 267 58 30 chr4 13575280 13575711 -188752636 + MLT1C LTR MaLR 16 467 0 396 194 42 42 chr4 13576205 13576344 -188752003 - MLT1J1 LTR MaLR -265 246 69 638 226 0 0 chr4 13576524 13576657 -188751690 + FLAM_C SINE Alu 1 133 -10 2496 57 0 0 chr4 13576734 13577030 -188751317 + AluY SINE Alu 1 296 -15 305 305 138 12 chr4 13577342 13577509 -188750838 - MIR SINE MIR -24 238 51 191 347 67 0 chr4 13578987 13579062 -188749285 - MIR SINE MIR -142 120 41 200 289 60 36 chr4 13580041 13580124 -188748223 + L2 LINE L2 3183 3267 -5 221 119 24 0 chr4 13581816 13581858 -188746489 + (TA)n Simple_repeat Simple_repeat 2 44 0 307 313 87 26 chr4 13582992 13583107 -188745240 - L2 LINE L2 0 3272 3151 26 0 0 0 chr4 13583520 13583546 -188744801 + AT_rich Low_complexity Low_complexity 1 26 0 189 301 36 0 chr4 13584110 13584193 -188744154 + L2 LINE L2 2929 3014 -258 1787 171 121 16 chr4 13584355 13584742 -188743605 - MSTA LTR MaLR 0 428 1 5531 113 10 2 chr4 13584774 13585654 -188742693 - L1PA13 LINE L1 0 6163 5277 212 244 0 0 chr4 13586660 13586705 -188741642 + GA-rich Low_complexity Low_complexity 5 49 0 274 364 70 7 chr4 13586788 13586931 -188741416 - MIR SINE MIR -12 250 99 811 292 117 3 chr4 13587193 13587570 -188740777 + LTR33A LTR ERVL 104 523 0 433 248 62 16 chr4 13588061 13588190 -188740157 - L2 LINE L2 -1 3271 3137 206 356 11 22 chr4 13588605 13588695 -188739652 + MIR SINE MIR 17 105 -157 23 33 0 0 chr4 13588987 13589017 -188739330 + AT_rich Low_complexity Low_complexity 1 30 0 289 183 33 0 chr4 13589852 13589912 -188738435 + MLT1K LTR MaLR 5 66 -522 2198 192 42 65 chr4 13590364 13590931 -188737416 + MLT2B3 LTR ERVL 1 554 0 303 301 55 97 chr4 13591496 13591785 -188736562 - L2 LINE L2 -4 3268 2992 2257 115 0 6 chr4 13591882 13592194 -188736153 + AluSx SINE Alu 1 310 -2 340 235 62 0 chr4 13592204 13592285 -188736062 - MIR SINE MIR -75 187 102 1762 102 4 0 chr4 13592368 13592617 -188735730 + AluSq SINE Alu 58 307 0 21 0 0 0 chr4 13593091 13593112 -188735235 + AT_rich Low_complexity Low_complexity 1 21 0 556 217 6 6 chr4 13593527 13593702 -188734645 + (CA)n Simple_repeat Simple_repeat 2 176 0 204 40 0 0 chr4 13593721 13593746 -188734601 + (CA)n Simple_repeat Simple_repeat 2 26 0 287 339 0 0 chr4 13594719 13594849 -188733498 - MER94 DNA DNA -1 133 4 212 238 111 16 chr4 13594853 13594916 -188733431 - MIR SINE MIR -55 153 85 232 263 66 13 chr4 13595404 13595480 -188732867 - MIR SINE MIR -66 196 117 1137 216 21 56 chr4 13595509 13595898 -188732449 + MLT2C1 LTR ERVL 13 462 -2 2200 96 3 13 chr4 13596141 13596444 -188731903 + AluY SINE Alu 1 300 -11 574 276 28 39 chr4 13596612 13596793 -188731554 + MER8 DNA MER2_type 1 179 -60 2195 84 28 3 chr4 13596918 13597204 -188731143 + AluY SINE Alu 1 293 -18 219 313 148 36 chr4 13598089 13598393 -188729954 + L2 LINE L2 2330 2667 -647 1525 251 126 39 chr4 13598397 13598936 -188729411 + MLT1E LTR MaLR 8 593 0 373 338 121 19 chr4 13599050 13599257 -188729090 - MIR SINE MIR -12 250 23 182 322 61 61 chr4 13600981 13601096 -188727251 - L2 LINE L2 -56 3216 3102 668 263 0 13 chr4 13601421 13601573 -188726774 + FRAM SINE Alu 1 150 -16 336 24 0 0 chr4 13601574 13601615 -188726732 + (CA)n Simple_repeat Simple_repeat 2 42 0 25 51 0 0 chr4 13601697 13601736 -188726611 + AT_rich Low_complexity Low_complexity 1 39 0 257 337 84 45 chr4 13602055 13602364 -188725983 + L2 LINE L2 2944 3264 -8 365 304 58 52 chr4 13602541 13602622 -188725725 + MIR SINE MIR 1 80 -182 1548 181 114 18 chr4 13602622 13602954 -188725393 - MLT1A1 LTR MaLR 0 365 2 365 304 58 52 chr4 13602954 13603124 -188725223 + MIR SINE MIR 80 256 -6 499 291 229 12 chr4 13604059 13604382 -188723965 + L2 LINE L2 2469 2861 -453 287 205 111 17 chr4 13604484 13604601 -188723746 + L1ME4a LINE L1 5976 6103 -18 261 329 0 0 chr4 13604602 13604681 -188723666 + L3 LINE CR1 1264 1342 -235 203 261 22 0 chr4 13604959 13605005 -188723342 + L2 LINE L2 3173 3219 -94 740 283 146 45 chr4 13605020 13605795 -188722552 - L2 LINE L2 -2 3311 2447 192 366 24 0 chr4 13605799 13605881 -188722466 + L2 LINE L2 3230 3313 0 505 242 33 26 chr4 13606058 13606211 -188722136 + MIR SINE MIR 15 168 -94 297 229 19 102 chr4 13606209 13606347 -188722000 + MIR SINE MIR 57 188 -62 * 395 319 39 68 chr4 13608217 13608350 -188719997 + MIR SINE MIR 59 185 -77 1996 157 3 0 chr4 13608350 13608650 -188719697 + AluJb SINE Alu 2 302 -10 395 319 39 68 chr4 13608650 13608723 -188719624 + MIR SINE MIR 185 259 -3 1769 165 43 6 chr4 13608899 13609227 -188719120 + MER2 DNA MER2_type 6 345 0 967 213 70 51 chr4 13609235 13609577 -188718770 + MLT2C1 LTR ERVL 1 423 -41 272 145 0 81 chr4 13609636 13609698 -188718649 + MLT2F LTR ERVL 464 663 0 1547 213 9 81 chr4 13609738 13610184 -188718163 + MLT2D LTR ERVL 1 414 0 430 211 145 18 chr4 13611414 13611580 -188716767 + MER53 DNA DNA 1 187 -2 440 272 190 35 chr4 13611967 13612557 -188715790 + L2 LINE L2 2611 3308 -5 252 263 100 25 chr4 13613058 13613138 -188715209 + MIR SINE MIR 55 140 -68 904 250 111 33 chr4 13613138 13613498 -188714849 - MLT1I LTR MaLR -3 406 19 262 300 25 0 chr4 13613503 13613583 -188714764 + MIR SINE MIR 165 246 -16 282 299 82 48 chr4 13664788 13664935 -188663412 - MIR3 SINE MIR -30 178 27 188 360 70 35 chr4 13666044 13666130 -188662217 + L2 LINE L2 3167 3255 -17 716 61 10 0 chr4 13666178 13666276 -188662071 + (GGGAA)n Simple_repeat Simple_repeat 1 99 0 452 299 102 6 chr4 13667982 13668159 -188660188 - MIR SINE MIR -38 224 31 2409 242 109 27 chr4 13668731 13670051 -188658296 - L1M4c LINE L1 -3465 3179 1708 2473 0 0 11 chr4 13670051 13670324 -188658023 + AluYa5 SINE Alu 39 308 -3 2409 242 109 27 chr4 13670324 13670512 -188657835 - L1M4c LINE L1 -4936 1708 1537 876 179 4 11 chr4 13670544 13670809 -188657538 + CT-rich Low_complexity Low_complexity 1 263 0 5206 240 46 24 chr4 13670810 13672339 -188656008 - L1M4c LINE L1 -4975 1567 6 449 346 33 25 chr4 13672529 13672772 -188655575 + L2 LINE L2 2595 2839 -475 576 312 93 23 chr4 13672872 13673173 -188655174 - L2 LINE L2 0 3313 2992 348 127 0 0 chr4 13673311 13673366 -188654981 + (CA)n Simple_repeat Simple_repeat 2 56 0 600 249 57 62 chr4 13673973 13674182 -188654165 - L2 LINE L2 -1 3312 3105 1162 269 101 20 chr4 13674205 13674611 -188653736 + L1MEc LINE L1 39 477 -5919 1252 292 72 12 chr4 13674612 13675027 -188653320 - L2 LINE L2 -378 2936 2497 582 336 71 28 chr4 13675506 13676072 -188652275 + L1M4 LINE L1 3851 4440 -1706 606 333 91 69 chr4 13676178 13676936 -188651411 - L2 LINE L2 -650 2664 1890 224 245 0 0 chr4 13676957 13677010 -188651337 + A-rich Low_complexity Low_complexity 1 53 0 310 268 28 28 chr4 13677358 13677500 -188650847 - MLT1L LTR MaLR -13 602 461 541 266 118 0 chr4 13678053 13678218 -188650129 - MER112 DNA MER1_type -4 256 55 254 29 29 0 chr4 13678218 13678253 -188650094 + (TG)n Simple_repeat Simple_repeat 2 37 0 541 266 118 0 chr4 13678253 13678316 -188650031 - MER112 DNA MER1_type -205 55 1 1602 229 9 0 chr4 13678534 13678884 -188649463 - MLT1A1 LTR MaLR -12 353 1 499 295 62 36 chr4 13679342 13679535 -188648812 - MIR SINE MIR -52 210 13 371 279 29 29 chr4 13680098 13680234 -188648113 + MIR SINE MIR 16 151 -57 1067 313 84 45 chr4 13680533 13681422 -188646925 - L2 LINE L2 -1 3312 2366 241 313 69 62 chr4 13681637 13681781 -188646566 + MIR SINE MIR 96 240 -22 351 238 198 0 chr4 13681815 13681916 -188646431 + L2 LINE L2 3193 3313 0 976 102 23 0 chr4 13682316 13682444 -188645903 + AluSq/x SINE Alu 1 131 -181 2226 115 33 36 chr4 13682679 13683044 -188645303 + THE1B LTR MaLR 1 364 0 247 288 56 8 chr4 13683301 13683426 -188644921 + L1MC5 LINE L1 7663 7793 -168 210 171 0 53 chr4 13683620 13683696 -188644651 + (TTA)n Simple_repeat Simple_repeat 1 72 0 306 291 136 0 chr4 13685297 13685407 -188642940 - L2 LINE L2 0 3272 3148 211 286 100 0 chr4 13685451 13685521 -188642826 + MIR SINE MIR 89 165 -97 2389 75 3 7 chr4 13686032 13686337 -188642010 + AluY SINE Alu 1 304 -7 183 42 0 0 chr4 13686882 13686906 -188641441 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2303 104 3 0 chr4 13688097 13688404 -188639943 + AluY SINE Alu 1 308 -3 318 233 49 86 chr4 13688458 13688621 -188639726 + MER112 DNA MER1_type 1 157 -103 2289 102 3 3 chr4 13688688 13688991 -188639356 - AluSg SINE Alu -7 303 1 256 278 183 9 chr4 13689039 13689154 -188639193 - L2 LINE L2 -9 3263 3129 1389 136 62 4 chr4 13689294 13689567 -188638780 - L1MA7 LINE L1 0 6291 6003 335 217 189 9 chr4 13689770 13689876 -188638471 - MIR SINE MIR -71 191 67 212 389 25 12 chr4 13690873 13691035 -188637312 - L2 LINE L2 -554 2760 2597 1745 252 19 36 chr4 13691057 13691581 -188636766 + LTR40a LTR ERVL 5 519 0 211 321 0 0 chr4 13692374 13692458 -188635889 - L2 LINE L2 -925 2389 2306 268 267 199 7 chr4 13692539 13692685 -188635662 - L2 LINE L2 -1218 2096 1923 4850 192 9 30 chr4 13692770 13694392 -188633955 - L1PA16 LINE L1 -7 6159 4584 8101 77 4 2 chr4 13694392 13696261 -188632086 + L1PA7 LINE L1 4283 6154 0 4850 192 9 30 chr4 13696261 13696377 -188631970 - L1PA16 LINE L1 -1582 4584 4467 3273 200 10 0 chr4 13696378 13697084 -188631263 + L1PA16 LINE L1 3737 4449 -1697 989 258 62 11 chr4 13697387 13697740 -188630607 - L1MEc LINE L1 -5989 407 37 991 325 59 60 chr4 13697773 13698502 -188629845 + L2 LINE L2 2230 2957 -357 329 197 0 0 chr4 13698503 13698574 -188629773 + MER96 DNA MER1_type? 105 175 0 909 210 119 62 chr4 13699470 13699855 -188628492 - MLT1I LTR MaLR -2 407 1 2169 108 0 3 chr4 13699868 13700155 -188628192 - AluSg SINE Alu -24 286 1 194 236 11 39 chr4 13700178 13700360 -188627987 + GA-rich Low_complexity Low_complexity 1 177 0 504 283 72 6 chr4 13700419 13700585 -188627762 + MIR SINE MIR 82 258 -4 202 257 71 29 chr4 13700655 13700725 -188627622 - MIR SINE MIR -106 156 84 2279 109 0 0 chr4 13701312 13701616 -188626731 + AluSx SINE Alu 3 306 -6 22 0 0 0 chr4 13702280 13702302 -188626045 + AT_rich Low_complexity Low_complexity 1 22 0 398 257 29 0 chr4 13702734 13702839 -188625508 + MIR SINE MIR 40 147 -115 2109 146 0 37 chr4 13703077 13703427 -188624920 + MER1B DNA MER1_type 1 337 0 486 238 61 17 chr4 13703790 13703971 -188624376 - L1M4 LINE L1 -966 5180 4992 242 158 49 98 chr4 13703966 13704048 -188624299 - L1MA10 LINE L1 0 6334 6257 * 225 282 14 0 chr4 13704049 13704120 -188624227 + CT-rich Low_complexity Low_complexity 3 74 0 2192 143 0 0 chr4 13704586 13704894 -188623453 + AluSq SINE Alu 1 308 -5 230 303 104 17 chr4 13704894 13705135 -188623212 - L1ME4a LINE L1 -44 6077 5816 260 306 56 56 chr4 13705217 13705361 -188622986 + L2 LINE L2 2823 2966 -306 211 269 202 0 chr4 13705919 13706023 -188622324 - MIR3 SINE MIR -1 207 83 248 319 80 64 chr4 13706223 13706474 -188621873 - L2 LINE L2 -4 3268 3014 427 290 106 57 chr4 13706536 13706751 -188621596 - MIR SINE MIR -31 231 10 237 303 124 68 chr4 13706861 13707095 -188621252 - L2 LINE L2 -182 3090 2844 371 259 108 27 chr4 13707129 13707498 -188620849 - MLT1G1 LTR MaLR -4 544 119 14349 206 35 11 chr4 13707747 13710692 -188617655 - L1PA15 LINE L1 -2 6814 3940 2445 81 0 0 chr4 13710692 13711000 -188617347 - AluY SINE Alu -3 308 1 14349 206 35 11 chr4 13711000 13711484 -188616863 - L1PA15 LINE L1 -2876 3940 3469 243 0 0 0 chr4 13711484 13711511 -188616836 + (TTG)n Simple_repeat Simple_repeat 1 27 0 14349 206 35 11 chr4 13711511 13713479 -188614868 - L1PA15 LINE L1 -3347 3469 1269 2541 285 11 25 chr4 13713551 13714278 -188614069 - L1PA15 LINE L1 -6070 717 1 443 157 0 14 chr4 13714786 13714856 -188613491 + MLT1C LTR MaLR 399 467 0 * 506 168 53 0 chr4 13714856 13714949 -188613398 + Charlie7 DNA MER1_type 592 689 -1923 233 197 17 154 chr4 13714951 13715068 -188613279 + Charlie7 DNA MER1_type 2496 2596 -16 449 135 54 0 chr4 13715396 13715470 -188612877 - MLT1C LTR MaLR -101 366 289 456 302 127 24 chr4 13715716 13715921 -188612426 - MIR SINE MIR -17 245 20 2916 140 16 7 chr4 13715921 13716372 -188611975 + L1PA15 LINE L1 5710 6164 -1 461 279 188 10 chr4 13716880 13717077 -188611270 + MIR SINE MIR 21 252 -10 229 305 0 0 chr4 13717909 13717968 -188610379 + C-rich Low_complexity Low_complexity 1 59 0 488 237 51 46 chr4 13718414 13718593 -188609754 - MIR3 SINE MIR -63 145 3 414 259 124 91 chr4 13718648 13719034 -188609313 + L2 LINE L2 2914 3312 -1 242 73 44 59 chr4 13719034 13719102 -188609245 + (CAAAT)n Simple_repeat Simple_repeat 1 67 0 266 242 47 62 chr4 13719190 13719318 -188609029 - MIR SINE MIR -44 218 93 1769 160 3 20 chr4 13719330 13719624 -188608723 - AluJo SINE Alu -20 292 4 338 353 100 13 chr4 13719630 13719780 -188608567 + MIR3 SINE MIR 31 193 -15 189 344 31 31 chr4 13720007 13720103 -188608244 - MIR SINE MIR -63 199 104 274 257 40 40 chr4 13720229 13720330 -188608017 - MLT2E LTR ERVL -489 139 39 * 276 78 0 59 chr4 13720284 13720335 -188608012 - MLT1J LTR MaLR -366 145 98 333 0 0 0 chr4 13720710 13720747 -188607600 + (TC)n Simple_repeat Simple_repeat 2 38 0 260 196 149 56 chr4 13721194 13721301 -188607046 - MIR3 SINE MIR -3 205 89 185 333 105 9 chr4 13721472 13721586 -188606761 - MIR SINE MIR -67 141 17 188 234 43 0 chr4 13722114 13722161 -188606186 + MIR3 SINE MIR 112 160 -48 291 298 0 12 chr4 13722628 13722712 -188605635 + L2 LINE L2 3186 3268 -4 273 364 10 0 chr4 13722814 13722913 -188605434 - L2 LINE L2 0 3272 3173 354 360 17 34 chr4 13723261 13723555 -188604792 - L2 LINE L2 -929 2385 2097 205 350 70 20 chr4 13723647 13723747 -188604600 + L2 LINE L2 3125 3229 -43 240 219 55 27 chr4 13723765 13723838 -188604509 + L3 LINE CR1 1147 1221 -356 270 287 138 42 chr4 13723932 13724001 -188604346 + L3 LINE CR1 1393 1454 -123 2831 106 3 13 chr4 13724001 13724380 -188603967 - THE1C LTR MaLR 0 375 1 270 287 138 42 chr4 13724380 13724477 -188603870 + L3 LINE CR1 1454 1575 -2 200 265 206 0 chr4 13724876 13724944 -188603403 + MIR SINE MIR 163 244 -18 197 356 23 53 chr4 13725065 13725197 -188603150 - L2 LINE L2 -7 3306 3179 373 350 24 0 chr4 13726846 13726969 -188601378 - MER5A DNA MER1_type -3 186 61 1811 167 20 0 chr4 13727043 13727336 -188601011 + AluSx SINE Alu 1 299 -13 773 106 0 8 chr4 13727336 13727459 -188600888 + (GGAGA)n Simple_repeat Simple_repeat 3 124 0 245 186 85 0 chr4 13727610 13727669 -188600678 - MIR SINE MIR -108 154 91 1542 262 116 30 chr4 13727696 13728052 -188600295 + L2 LINE L2 2240 2564 -749 1758 208 30 24 chr4 13728052 13728422 -188599925 - MLT1A2 LTR MaLR -2 372 1 1542 262 116 30 chr4 13728422 13729063 -188599284 + L2 LINE L2 2564 3312 -1 256 325 32 57 chr4 13729190 13729313 -188599034 + L2 LINE L2 3150 3269 -3 324 297 198 24 chr4 13729488 13729700 -188598647 + MIR SINE MIR 14 262 0 1177 91 3 20 chr4 13729997 13730338 -188598009 + (GAAA)n Simple_repeat Simple_repeat 1 336 0 609 308 165 10 chr4 13730968 13731380 -188596967 + L2 LINE L2 2837 3312 -1 248 298 75 17 chr4 13732138 13732265 -188596082 + MIR SINE MIR 18 145 -63 23 0 0 0 chr4 13732435 13732458 -188595889 + AT_rich Low_complexity Low_complexity 1 23 0 262 253 89 13 chr4 13732870 13732949 -188595398 + L2 LINE L2 3200 3284 -29 194 272 64 81 chr4 13733092 13733265 -188595082 - L2 LINE L2 -299 2973 2804 1512 214 59 15 chr4 13733510 13733902 -188594445 + L1M4 LINE L1 2611 3019 -3127 9391 160 23 6 chr4 13733910 13734613 -188593734 + L1PA13 LINE L1 3709 4398 -1765 189 0 0 0 chr4 13734613 13734634 -188593713 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 9391 160 23 6 chr4 13734634 13736350 -188591997 + L1PA13 LINE L1 4398 6157 -6 528 214 8 40 chr4 13736398 13736524 -188591823 + L1MDa LINE L1 34 155 -6385 * 1218 209 110 25 chr4 13736518 13736882 -188591465 + L1MDa LINE L1 957 1351 -5189 1126 227 23 0 chr4 13736914 13737130 -188591217 + MER58A DNA MER1_type 1 221 -3 338 226 49 39 chr4 13737130 13737232 -188591115 + L1MDa LINE L1 3448 3550 -2990 1580 224 61 3 chr4 13737236 13737579 -188590768 - MLT1A1 LTR MaLR 0 365 3 488 238 54 20 chr4 13737580 13737727 -188590620 + L1ME2 LINE L1 6008 6159 -5 1122 246 28 108 chr4 13737727 13738102 -188590245 + L2 LINE L2 2708 2997 -316 2180 101 0 14 chr4 13738102 13738425 -188589922 - AluSx SINE Alu 0 319 1 1122 246 28 108 chr4 13738425 13738719 -188589628 + L2 LINE L2 2997 3313 0 3361 153 32 3 chr4 13738861 13739362 -188588985 - L1MA5 LINE L1 -2 6298 5778 339 25 0 0 chr4 13739362 13739402 -188588945 + (TG)n Simple_repeat Simple_repeat 2 41 0 3361 153 32 3 chr4 13739402 13739468 -188588879 - L1MA5 LINE L1 -522 5778 5715 935 198 14 10 chr4 13739518 13739725 -188588622 - L1MA5 LINE L1 -905 5241 5034 13968 198 39 23 chr4 13739730 13744061 -188584286 - L1M2 LINE L1 -586 6776 2372 357 159 0 0 chr4 13744062 13744125 -188584222 + (TA)n Simple_repeat Simple_repeat 2 64 0 252 0 0 0 chr4 13744125 13744153 -188584194 + (TG)n Simple_repeat Simple_repeat 2 29 0 459 0 0 0 chr4 13744153 13744204 -188584143 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 2413 73 0 0 chr4 13744204 13744490 -188583857 - L1PA7 LINE L1 -17 6137 5852 1112 64 0 0 chr4 13744492 13744633 -188583714 + L1PA7 LINE L1 5682 5822 -332 * 3162 190 20 12 chr4 13744627 13745275 -188583072 - L1M2 LINE L1 -4804 2405 1753 1868 290 9 69 chr4 13745505 13746175 -188582172 - L1M2 LINE L1 -6566 643 14 21 0 0 0 chr4 13746442 13746463 -188581884 + AT_rich Low_complexity Low_complexity 1 21 0 1032 230 5 0 chr4 13747851 13748055 -188580292 - MER3 DNA MER1_type 0 209 5 728 226 56 64 chr4 13748208 13748380 -188579967 + MIR SINE MIR 12 183 -79 390 21 0 0 chr4 13748380 13748427 -188579920 + (TA)n Simple_repeat Simple_repeat 1 47 0 728 226 56 64 chr4 13748427 13748488 -188579859 + MIR SINE MIR 183 243 -19 2106 129 10 7 chr4 13749172 13749481 -188578866 + AluSx SINE Alu 1 310 -2 3104 70 18 2 chr4 13749825 13750226 -188578121 + L1PA8 LINE L1 5766 6172 0 1448 138 17 0 chr4 13750236 13750475 -188577872 + L1MA7 LINE L1 6046 6288 -3 831 264 60 90 chr4 13750516 13750917 -188577430 - L2 LINE L2 -1 3312 2924 1107 211 35 0 chr4 13750951 13751179 -188577168 + Charlie1 DNA MER1_type 1 236 -2525 1402 133 49 61 chr4 13751288 13751552 -188576795 + L1MA9 LINE L1 6048 6308 -4 235 319 9 35 chr4 13751552 13751665 -188576682 - MIR3 SINE MIR -98 110 1 2268 139 16 40 chr4 13751821 13752194 -188576153 - THE1B LTR MaLR 0 364 1 1901 204 161 2 chr4 13753311 13753719 -188574628 + MLT2B1 LTR ERVL 1 487 -33 396 0 0 0 chr4 13753719 13753763 -188574584 + (TG)n Simple_repeat Simple_repeat 2 45 0 1901 204 161 2 chr4 13753763 13753801 -188574546 + MLT2B1 LTR ERVL 487 518 -2 1774 159 0 0 chr4 13753825 13754096 -188574251 - AluJb SINE Alu -17 295 25 629 150 174 54 chr4 13754341 13754508 -188573839 - MER3 DNA MER1_type -22 187 1 451 282 86 12 chr4 13755536 13755699 -188572648 - L2 LINE L2 -1 3312 3138 3973 125 40 12 chr4 13755714 13756315 -188572032 + MER51A LTR ERV1 1 618 -16 227 282 27 87 chr4 13756338 13756487 -188571860 - L2 LINE L2 -180 3133 2994 7497 24 0 0 chr4 13756910 13757769 -188570578 - L1PA4 LINE L1 -1385 4761 3903 8117 26 0 1 chr4 13757769 13759125 -188569222 + L1PA4 LINE L1 4790 6147 -8 215 73 49 0 chr4 13759137 13759178 -188569169 + A-rich Low_complexity Low_complexity 2 44 0 247 289 7 22 chr4 13760107 13760242 -188568105 + GA-rich Low_complexity Low_complexity 3 135 0 819 172 107 2 chr4 13762076 13762300 -188566047 - L1MA5A LINE L1 -23 6280 6011 2105 93 0 34 chr4 13764263 13764578 -188563769 - AluSq SINE Alu 0 306 2 246 322 81 0 chr4 13764862 13764949 -188563398 + MIR3 SINE MIR 87 180 -28 778 139 24 2 chr4 13766580 13766761 -188561586 + L1MB3 LINE L1 5255 5443 -722 2262 150 12 28 chr4 13766773 13767200 -188561147 + L1MB3 LINE L1 5756 6175 -8 267 189 0 0 chr4 13768550 13768603 -188559744 + G-rich Low_complexity Low_complexity 3 55 0 1949 146 76 95 chr4 13768954 13769082 -188559265 + MLT1D LTR MaLR 1 130 -375 2552 163 21 2 chr4 13769082 13769500 -188558847 + MSTB LTR MaLR 1 426 0 1949 146 76 95 chr4 13769500 13769886 -188558461 + MLT1D LTR MaLR 130 505 0 302 244 100 93 chr4 13769916 13770153 -188558194 + MLT1J LTR MaLR 231 472 -39 1587 194 17 92 chr4 13770153 13770623 -188557724 - MER63B DNA MER1_type -1 435 1 302 244 100 93 chr4 13770623 13770664 -188557683 + MLT1J LTR MaLR 472 511 0 317 313 77 62 chr4 13770786 13770994 -188557353 - MIR SINE MIR -30 232 22 197 213 21 0 chr4 13771013 13771060 -188557287 + L2 LINE L2 3258 3305 -8 240 340 187 18 chr4 13771958 13772455 -188555892 - L2 LINE L2 -459 2855 2275 181 267 0 0 chr4 13772506 13772551 -188555796 + L2 LINE L2 3269 3313 0 2363 185 75 2 chr4 13772635 13773077 -188555270 + MLT2B2 LTR ERVL 1 482 -33 488 16 16 0 chr4 13773077 13773138 -188555209 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 2363 185 75 2 chr4 13773138 13773175 -188555172 + MLT2B2 LTR ERVL 482 515 0 342 313 56 20 chr4 13773778 13773973 -188554374 + L1ME4a LINE L1 5707 5908 -213 1760 159 28 7 chr4 13774487 13774777 -188553570 - AluSx SINE Alu -16 296 1 1149 293 93 16 chr4 13775202 13775687 -188552660 + LTR67 LTR ERVL 36 557 0 377 305 141 23 chr4 13776716 13776844 -188551503 - MIR3 SINE MIR -46 162 20 433 316 127 5 chr4 13779178 13779390 -188548957 - MIR SINE MIR -5 257 20 293 323 89 38 chr4 13779504 13779662 -188548685 - MER5A DNA MER1_type -6 183 18 442 236 97 28 chr4 13779748 13779892 -188548455 + MLT1L LTR MaLR 6 159 -456 195 42 0 0 chr4 13779942 13779966 -188548381 + (CA)n Simple_repeat Simple_repeat 1 24 0 200 57 0 29 chr4 13779987 13780022 -188548325 + (TTAAA)n Simple_repeat Simple_repeat 4 37 0 315 237 86 32 chr4 13780026 13780119 -188548228 + MER5B DNA MER1_type 81 178 0 921 268 55 28 chr4 13780125 13780487 -188547860 + MLT1L LTR MaLR 169 540 -75 2197 103 11 0 chr4 13780511 13780793 -188547554 - AluSx SINE Alu -27 285 1 779 254 43 35 chr4 13781045 13781277 -188547070 - MIR SINE MIR 0 262 29 519 309 96 5 chr4 13781695 13781915 -188546432 + MIR SINE MIR 23 262 0 187 351 0 0 chr4 13781919 13781976 -188546371 + L2 LINE L2 3201 3257 -15 180 205 0 0 chr4 13782650 13782689 -188545658 - MIR SINE MIR -110 152 114 193 268 0 0 chr4 13782792 13782833 -188545514 + MER5A DNA MER1_type 149 189 0 254 306 73 8 chr4 13782853 13782977 -188545370 - MIR3 SINE MIR -70 138 7 196 325 29 86 chr4 13783022 13783231 -188545116 - L2 LINE L2 -1 3271 3075 511 273 105 50 chr4 13783593 13784175 -188544172 + L1ME4a LINE L1 5494 6107 -14 335 341 41 8 chr4 13784476 13784599 -188543748 + MIR SINE MIR 35 161 -101 1991 189 114 16 chr4 13784601 13785093 -188543254 - MLT1F LTR MaLR -1 541 2 483 257 28 21 chr4 13785219 13785363 -188542984 - MIR3 SINE MIR -49 159 15 423 274 0 11 chr4 13786569 13786664 -188541683 + MER91B DNA MER1_type 96 189 -1 227 143 48 0 chr4 13786719 13786761 -188541586 + Charlie8 DNA MER1_type 222 265 -2152 457 337 59 19 chr4 13786857 13787127 -188541220 - L3 LINE CR1 -148 1429 1149 457 245 28 0 chr4 13787196 13787302 -188541045 + MER5A DNA MER1_type 10 118 -71 230 325 83 17 chr4 13787321 13787441 -188540906 - L3 LINE CR1 -579 998 871 187 333 50 0 chr4 13787523 13787583 -188540764 + L2 LINE L2 3188 3250 -22 31 0 0 0 chr4 13787623 13787654 -188540693 + AT_rich Low_complexity Low_complexity 1 31 0 322 288 23 8 chr4 13787671 13787803 -188540544 - MLT1K LTR MaLR -116 472 339 182 317 127 21 chr4 13789081 13789223 -188539124 + MIR SINE MIR 60 216 -46 229 330 50 40 chr4 13789604 13789704 -188538643 + L2 LINE L2 3141 3241 -31 24 32 0 0 chr4 13789759 13789790 -188538557 + AT_rich Low_complexity Low_complexity 1 31 0 30 0 0 0 chr4 13789838 13789868 -188538479 + AT_rich Low_complexity Low_complexity 1 30 0 257 354 61 0 chr4 13789912 13790011 -188538336 + MIR3 SINE MIR 87 191 -17 216 0 0 0 chr4 13790322 13790346 -188538001 + (A)n Simple_repeat Simple_repeat 1 24 0 190 180 40 40 chr4 13793306 13793356 -188534991 - L2 LINE L2 -1 3271 3222 398 273 74 16 chr4 13795326 13795447 -188532900 + MIR3 SINE MIR 68 195 -13 382 315 35 21 chr4 13796388 13796531 -188531816 + L2 LINE L2 3127 3271 -1 395 154 26 0 chr4 13796861 13796939 -188531408 + (TATG)n Simple_repeat Simple_repeat 2 81 0 198 294 91 35 chr4 13797527 13797670 -188530677 + L2 LINE L2 2420 2570 -744 511 294 41 16 chr4 13798028 13798222 -188530125 + MIR SINE MIR 2 200 -62 198 231 39 19 chr4 13798550 13798602 -188529745 + L2 LINE L2 3214 3266 -6 243 0 0 0 chr4 13798709 13798736 -188529611 + (CA)n Simple_repeat Simple_repeat 2 28 0 31 0 0 0 chr4 13799720 13799751 -188528596 + AT_rich Low_complexity Low_complexity 1 31 0 200 344 22 0 chr4 13799972 13800062 -188528285 - L3b LINE CR1 -389 1194 1103 6614 254 128 15 chr4 13800422 13801869 -188526478 - L2 LINE L2 -405 2909 1150 2199 110 10 3 chr4 13801869 13802169 -188526178 + AluSg1 SINE Alu 1 302 -7 6614 254 128 15 chr4 13802169 13802817 -188525530 - L2 LINE L2 -2164 1150 577 379 250 214 42 chr4 13803422 13803926 -188524421 + L1ME4a LINE L1 5352 5942 -179 330 335 68 15 chr4 13803927 13804074 -188524273 + MIR SINE MIR 16 168 -40 226 263 40 0 chr4 13804141 13804217 -188524130 + L1ME4a LINE L1 5965 6043 -78 28 61 0 0 chr4 13804231 13804280 -188524067 + AT_rich Low_complexity Low_complexity 1 49 0 537 245 117 27 chr4 13804628 13804816 -188523531 + MIR SINE MIR 58 262 0 2386 101 0 3 chr4 13805634 13805940 -188522407 - AluSx SINE Alu -7 305 1 200 35 35 0 chr4 13805941 13805970 -188522377 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 28 0 0 0 chr4 13806218 13806246 -188522101 + AT_rich Low_complexity Low_complexity 1 28 0 332 218 0 0 chr4 13806429 13806484 -188521863 - L2 LINE L2 -4 3268 3214 343 0 0 0 chr4 13806487 13806527 -188521820 + THE1B LTR MaLR 1 40 -335 1409 131 5 5 chr4 13806529 13806751 -188521596 + THE1B LTR MaLR 11 232 -132 1190 216 72 0 chr4 13806751 13807015 -188521332 + L1PA13 LINE L1 450 732 -6055 * 7339 177 49 1 chr4 13807009 13807313 -188521034 + L1PA13 LINE L1 944 1232 -5565 198 0 0 0 chr4 13807313 13807335 -188521012 + (CTG)n Simple_repeat Simple_repeat 2 23 0 7339 177 49 1 chr4 13807335 13808736 -188519611 + L1PA13 LINE L1 1232 2754 -4043 1580 174 29 6 chr4 13808744 13809089 -188519258 + L1 LINE L1 4929 5281 -865 5689 114 24 0 chr4 13809089 13810198 -188518149 + L1PA13 LINE L1 5031 6161 -2 819 236 121 25 chr4 13810265 13810705 -188517642 + Charlie7 DNA MER1_type 778 1259 -1353 3687 193 34 12 chr4 13811125 13812415 -188515932 + L1MB2 LINE L1 4807 6171 0 521 207 103 11 chr4 13812471 13812645 -188515702 - L1MC5 LINE L1 -48 7913 7724 11288 59 1 38 chr4 13812721 13815030 -188513317 + L1PA6 LINE L1 3862 6141 -13 331 162 73 0 chr4 13815514 13815582 -188512765 - L1M2 LINE L1 -759 5541 5469 * 491 89 13 0 chr4 13815572 13815651 -188512696 + L1MA8 LINE L1 6090 6169 -122 * 940 123 0 0 chr4 13815650 13815805 -188512542 + L1MA8 LINE L1 6106 6260 -31 422 241 83 9 chr4 13815808 13815916 -188512431 + MIR SINE MIR 122 237 -25 202 333 66 71 chr4 13816107 13816290 -188512057 - L2 LINE L2 -182 3090 2909 349 297 50 30 chr4 13816857 13816958 -188511389 - L2 LINE L2 -4 3268 3166 2117 148 6 26 chr4 13817149 13817493 -188510854 - MER1B DNA MER1_type 0 337 1 375 360 34 7 chr4 13817678 13817825 -188510522 - L2 LINE L2 -556 2758 2608 316 321 107 12 chr4 13817828 13817996 -188510351 - MIR SINE MIR -43 219 36 23 33 0 0 chr4 13818957 13818987 -188509360 + AT_rich Low_complexity Low_complexity 1 30 0 384 248 85 0 chr4 13820067 13820208 -188508139 + L1ME3A LINE L1 5796 5948 -222 230 231 66 33 chr4 13820273 13820364 -188507983 + L1ME3A LINE L1 5971 6064 -106 21 57 0 0 chr4 13820435 13820470 -188507877 + AT_rich Low_complexity Low_complexity 1 35 0 2499 57 0 0 chr4 13821437 13821734 -188506613 + AluY SINE Alu 1 297 -14 592 274 139 19 chr4 13821924 13822132 -188506215 - MIR SINE MIR -22 240 8 843 286 98 25 chr4 13822141 13822620 -188505727 - L1ME3 LINE L1 -248 5914 5401 593 288 134 23 chr4 13822639 13823458 -188504889 - L1ME3 LINE L1 -780 5366 4457 * 5574 236 67 42 chr4 13823452 13824265 -188504082 - L1ME3 LINE L1 -1947 4199 3408 1482 84 5 14 chr4 13824265 13824480 -188503867 + L1PA7 LINE L1 5940 6152 -2 5574 236 67 42 chr4 13824480 13825653 -188502694 - L1ME3 LINE L1 -2738 3408 2162 1035 238 70 46 chr4 13825656 13825721 -188502626 - MER58B DNA MER1_type -2079 341 279 1672 174 3 3 chr4 13825721 13826033 -188502314 - AluJb SINE Alu 0 314 3 1035 238 70 46 chr4 13826033 13826294 -188502053 - MER58B DNA MER1_type -2141 279 6 232 213 16 16 chr4 13826305 13826366 -188501981 + L2 LINE L2 2727 2787 -527 2114 99 7 0 chr4 13827038 13827344 -188501003 + AluSp SINE Alu 1 308 0 24 77 0 0 chr4 13828822 13828874 -188499473 + AT_rich Low_complexity Low_complexity 1 52 0 12630 86 6 11 chr4 13828949 13831515 -188496832 - L1PA7 LINE L1 -8 6146 3592 25 51 0 0 chr4 13831929 13831968 -188496379 + AT_rich Low_complexity Low_complexity 1 39 0 950 327 21 28 chr4 13832350 13832778 -188495569 - MLT2F LTR ERVL -238 425 1 2130 135 122 13 chr4 13832798 13833184 -188495163 + MSTA LTR MaLR 1 428 0 24 0 0 0 chr4 13833472 13833496 -188494851 + AT_rich Low_complexity Low_complexity 1 24 0 557 306 127 39 chr4 13833839 13834280 -188494067 + HAL1 LINE L1 1243 1722 -785 26 88 0 0 chr4 13834613 13834681 -188493666 + AT_rich Low_complexity Low_complexity 1 68 0 397 274 124 71 chr4 13835856 13836421 -188491926 + HAL1b LINE L1 8 602 -746 421 326 93 21 chr4 13837291 13837776 -188490571 + L1M4 LINE L1 3374 3893 -2253 470 338 73 17 chr4 13837783 13838070 -188490277 + L1M4 LINE L1 3920 4222 -1924 3937 130 61 36 chr4 13838161 13839097 -188489250 + pTR5 LTR ERV1 741 2021 -417 404 238 10 0 chr4 13839098 13839199 -188489148 + LTR30 LTR ERV1 541 642 -80 1669 79 7 4 chr4 13839202 13839438 -188488909 + pTR5 LTR ERV1 172 495 -219 238 290 112 41 chr4 13841366 13841535 -188486812 - MLT1K LTR MaLR -338 250 70 4186 193 8 11 chr4 13842502 13843328 -188485019 + L1PA15 LINE L1 5341 6164 -1 297 324 183 0 chr4 13843836 13843978 -188484369 + MIR SINE MIR 21 188 -74 1419 213 95 32 chr4 13844229 13844661 -188483686 + LTR2B LTR ERV1 32 490 0 519 330 87 33 chr4 13844670 13845245 -188483102 - L1MEc LINE L1 -5760 636 31 6469 185 37 29 chr4 13845481 13847336 -188481011 + L1P3 LINE L1 530 2415 -4046 28 0 0 0 chr4 13847640 13847668 -188480679 + AT_rich Low_complexity Low_complexity 1 28 0 311 236 0 0 chr4 13847851 13847906 -188480441 - L2 LINE L2 -4 3268 3214 359 0 0 0 chr4 13847909 13847949 -188480398 + THE1B LTR MaLR 1 40 -324 1492 131 5 5 chr4 13847951 13848173 -188480174 + THE1B LTR MaLR 11 232 -132 1269 214 48 8 chr4 13848173 13848425 -188479922 + L1PA13 LINE L1 450 711 -6076 903 257 66 12 chr4 13850493 13850734 -188477613 + MIR SINE MIR 9 262 0 32 103 0 0 chr4 13850795 13850911 -188477436 + AT_rich Low_complexity Low_complexity 1 116 0 5659 210 20 2 chr4 13852026 13853223 -188475124 - L1P LINE L1 -1751 4395 3178 2211 98 0 28 chr4 13853228 13853545 -188474802 - AluSx SINE Alu -3 309 2 250 322 81 0 chr4 13853829 13853916 -188474431 + MIR3 SINE MIR 87 180 -28 24 77 0 0 chr4 13855185 13855237 -188473110 + AT_rich Low_complexity Low_complexity 1 52 0 6558 81 14 0 chr4 13855313 13856424 -188471923 - L1PA7 LINE L1 -9 6145 5031 1175 207 43 29 chr4 13856424 13856772 -188471575 - L1 LINE L1 -865 5281 4929 507 283 49 101 chr4 13857197 13857483 -188470864 + L2 LINE L2 3042 3312 -1 1372 138 17 0 chr4 13857524 13857763 -188470584 - L1MA7 LINE L1 -3 6288 6046 6839 71 7 16 chr4 13857772 13859419 -188468928 - L1PA8 LINE L1 -3 6169 4529 382 350 24 0 chr4 13860855 13860978 -188467369 - MER5A DNA MER1_type -3 186 61 2331 101 0 13 chr4 13861052 13861359 -188466988 + AluSx SINE Alu 1 303 -9 1067 219 4 25 chr4 13861772 13862009 -188466338 - AluJb SINE Alu -77 235 4 346 353 100 13 chr4 13862015 13862165 -188466182 + MIR3 SINE MIR 31 193 -15 197 344 31 31 chr4 13862392 13862488 -188465859 - MIR SINE MIR -63 199 104 271 257 40 40 chr4 13862614 13862715 -188465632 - MLT2E LTR ERVL -489 139 39 * 272 78 0 59 chr4 13862669 13862720 -188465627 - MLT1J LTR MaLR -366 145 98 315 0 0 0 chr4 13863095 13863130 -188465217 + (TC)n Simple_repeat Simple_repeat 2 36 0 253 196 149 56 chr4 13863577 13863684 -188464663 - MIR3 SINE MIR -3 205 89 7125 47 6 9 chr4 13865151 13866453 -188461894 + L1PA6 LINE L1 4854 6154 0 352 211 100 11 chr4 13866695 13866785 -188461562 + MER58B DNA MER1_type 1 98 -243 315 118 8 6 chr4 13866789 13867035 -188461312 + AluSq SINE Alu 1 299 -4 * 1153 178 29 25 chr4 13867025 13867266 -188461081 + MER58B DNA MER1_type 100 341 0 1870 195 74 14 chr4 13867712 13868142 -188460205 - MLT1C LTR MaLR -8 459 4 1540 245 164 23 chr4 13868154 13868722 -188459625 + L2 LINE L2 1389 2036 -1278 282 385 55 0 chr4 13870149 13870258 -188458089 + L2 LINE L2 3154 3268 -4 636 318 89 35 chr4 13870792 13871367 -188456980 + L1MEc LINE L1 460 1065 -5760 1671 191 115 29 chr4 13871376 13871827 -188456520 - LTR2B LTR ERV1 0 490 1 1277 222 58 15 chr4 13872061 13872459 -188455888 + L1MEc LINE L1 1345 4429 -2215 2336 93 0 7 chr4 13872480 13872782 -188455565 - AluSx SINE Alu -12 300 1 2913 199 27 87 chr4 13872802 13873735 -188454612 + L1MEc LINE L1 4624 5500 -1144 346 275 0 0 chr4 13874991 13875082 -188453265 + L1PA15-16 LINE L1 1474 1564 -5285 5404 219 52 16 chr4 13875086 13876784 -188451563 + L1PA16 LINE L1 1355 3105 -3744 5329 133 21 32 chr4 13876807 13877873 -188450474 + L1PA16 LINE L1 5105 6165 -1 * 11165 197 35 18 chr4 13877852 13878273 -188450074 + L1PA16 LINE L1 3077 3489 -3380 2310 110 3 0 chr4 13878273 13878583 -188449764 + AluSx SINE Alu 1 311 -1 11165 197 35 18 chr4 13878583 13881621 -188446726 + L1PA16 LINE L1 3489 6584 -285 3934 180 50 53 chr4 13881809 13882893 -188445454 - L1MB7 LINE L1 -19 6165 5082 1680 170 29 0 chr4 13882893 13883169 -188445178 - AluSx SINE Alu -14 298 15 3934 180 50 53 chr4 13883169 13883260 -188445087 - L1MB7 LINE L1 -1102 5082 4992 586 202 4 19 chr4 13883258 13883385 -188444962 - L1PA16 LINE L1 0 6165 6039 * 27 81 0 0 chr4 13883977 13884039 -188444308 + AT_rich Low_complexity Low_complexity 1 62 0 1215 194 30 11 chr4 13884207 13884475 -188443872 + MLT1B LTR MaLR 1 273 -117 32 103 0 0 chr4 13886067 13886183 -188442164 + AT_rich Low_complexity Low_complexity 1 116 0 882 259 67 13 chr4 13886244 13886483 -188441864 - MIR SINE MIR 0 262 11 2299 99 0 0 chr4 13886716 13887008 -188441339 - AluSc SINE Alu -17 292 1 4283 126 55 57 chr4 13887069 13887555 -188440792 - L1MA9 LINE L1 0 6312 5827 2576 58 0 0 chr4 13887555 13887863 -188440484 - AluY SINE Alu -3 308 1 4283 126 55 57 chr4 13887863 13888266 -188440081 - L1MA9 LINE L1 -485 5827 5425 314 235 217 9 chr4 13888269 13888384 -188439963 + L2 LINE L2 2116 2254 -1060 9438 163 37 40 chr4 13888386 13890351 -188437996 - L1P3 LINE L1 -4467 1994 10 1962 249 65 4 chr4 13890352 13890890 -188437457 + L2 LINE L2 2250 2820 -494 22 0 0 0 chr4 13891138 13891160 -188437187 + AT_rich Low_complexity Low_complexity 1 22 0 186 170 0 85 chr4 13891211 13891258 -188437089 + MIR SINE MIR 220 262 0 347 273 105 47 chr4 13891492 13891664 -188436683 - MIR3 SINE MIR -3 205 24 198 0 0 0 chr4 13892449 13892471 -188435876 + (CAG)n Simple_repeat Simple_repeat 2 23 0 29 60 0 0 chr4 13893561 13893611 -188434736 + AT_rich Low_complexity Low_complexity 1 50 0 443 367 157 14 chr4 13894125 13894669 -188433678 - L2 LINE L2 -87 3226 2601 2681 160 9 65 chr4 13894673 13895570 -188432777 - L1M2 LINE L1 -743 6045 5348 10434 227 34 32 chr4 13895606 13899463 -188428884 - L1M2 LINE L1 -2778 4010 138 548 346 21 16 chr4 13899912 13900155 -188428192 - MIR SINE MIR 0 262 19 21 0 0 0 chr4 13900454 13900475 -188427872 + AT_rich Low_complexity Low_complexity 1 21 0 192 77 0 0 chr4 13901122 13901148 -188427199 + (A)n Simple_repeat Simple_repeat 1 26 0 896 187 50 124 chr4 13901828 13902087 -188426260 + pTR5 LTR ERV1 172 581 -133 506 263 117 9 chr4 13902133 13902346 -188426001 + L1ME2 LINE L1 5878 6113 -51 31237 98 10 11 chr4 13902362 13906906 -188421441 + L1P LINE L1 11 4549 -1597 491 316 91 21 chr4 13907006 13907193 -188421154 - L3b LINE CR1 -98 1485 1286 1536 117 68 42 chr4 13907209 13907472 -188420875 + MER7A DNA MER2_type 1 268 -78 2074 96 47 209 chr4 13907472 13908003 -188420344 + MLT2A2 LTR ERVL 1 445 -8 401 219 49 0 chr4 13908005 13908087 -188420260 + MER7A DNA MER2_type 251 336 -1 884 201 73 14 chr4 13908761 13908980 -188419367 - MLT1A2 LTR MaLR -8 366 135 689 160 0 8 chr4 13908996 13909115 -188419232 - FLAM_C SINE Alu -25 118 1 686 142 8 60 chr4 13909121 13909255 -188419092 - MLT1A2 LTR MaLR -238 127 1 676 282 162 38 chr4 13909726 13910152 -188418195 - L3b LINE CR1 -3 1580 1102 443 240 197 16 chr4 13910426 13910609 -188417738 - MIR SINE MIR 0 262 47 1208 225 102 12 chr4 13910824 13911166 -188417181 + MER63 DNA MER1_type 689 1061 0 414 274 10 10 chr4 13911216 13911318 -188417029 + MIR3 SINE MIR 97 198 -10 240 273 98 70 chr4 13911533 13911676 -188416671 + MIR SINE MIR 20 166 -96 1200 229 0 0 chr4 13911974 13912192 -188416155 + MER58A DNA MER1_type 7 224 0 21 0 0 0 chr4 13912431 13912452 -188415895 + AT_rich Low_complexity Low_complexity 1 21 0 3661 230 80 24 chr4 13912460 13914315 -188414032 + L1MCc LINE L1 1 2505 -4617 4642 188 49 7 chr4 13914317 13914353 -188413994 + L1MA7 LINE L1 4658 4691 -1600 315 0 0 0 chr4 13914353 13914388 -188413959 + (CA)n Simple_repeat Simple_repeat 2 36 0 4642 188 49 7 chr4 13914388 13915920 -188412427 + L1MA7 LINE L1 4691 6291 0 3274 251 83 20 chr4 13915950 13917611 -188410736 + L1MCc LINE L1 2393 4231 -2710 1387 203 35 18 chr4 13918300 13918586 -188409761 - AluJo SINE Alu -19 293 3 884 200 0 0 chr4 13920101 13920261 -188408086 - FRAM SINE Alu -3 163 4 256 232 18 0 chr4 13920686 13920742 -188407605 + L1MB5 LINE L1 6072 6128 -46 807 225 12 0 chr4 13920876 13921036 -188407311 - FRAM SINE Alu -4 162 1 49 43 0 0 chr4 13921086 13921156 -188407191 + AT_rich Low_complexity Low_complexity 1 70 0 21 36 0 0 chr4 13921229 13921257 -188407090 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr4 13921551 13921574 -188406773 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 21 57 0 0 chr4 13922363 13922398 -188405949 + AT_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chr4 13926273 13926313 -188402034 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr4 13927779 13927802 -188400545 + AT_rich Low_complexity Low_complexity 1 23 0 23 86 0 0 chr4 13928542 13928600 -188399747 + AT_rich Low_complexity Low_complexity 1 58 0 365 236 107 74 chr4 13932183 13932399 -188395948 - MIR SINE MIR -20 242 20 555 243 184 10 chr4 13933738 13933944 -188394403 + Charlie1 DNA MER1_type 1 242 -2519 * 680 176 37 7 chr4 13933927 13934063 -188394284 + Charlie1 DNA MER1_type 2622 2761 0 187 297 22 33 chr4 13934186 13934277 -188394070 - MIR SINE MIR -68 194 105 333 291 111 0 chr4 13934405 13934522 -188393825 + MIR SINE MIR 117 246 -16 202 243 99 42 chr4 13934583 13934663 -188393684 + MIR SINE MIR 69 153 -55 426 413 40 0 chr4 13935698 13935923 -188392424 - L3 LINE CR1 -73 1504 1271 1723 171 0 35 chr4 13935958 13936273 -188392074 + AluJb SINE Alu 2 305 -7 480 239 0 99 chr4 13936274 13936416 -188391931 - L2 LINE L2 -1 3312 3185 1101 193 21 13 chr4 13936421 13936864 -188391483 + MLT1D LTR MaLR 5 505 0 1261 248 40 6 chr4 13937374 13937721 -188390626 - L1ME3 LINE L1 -90 6072 5714 2189 98 7 7 chr4 13938037 13938332 -188390015 + AluSc SINE Alu 1 295 -14 297 135 0 0 chr4 13938332 13938384 -188389963 + (TA)n Simple_repeat Simple_repeat 1 52 0 841 281 131 20 chr4 13938626 13939555 -188388792 + L1P5 LINE L1 4456 5491 -663 650 228 163 125 chr4 13939562 13940212 -188388135 - LTR50 LTR ERVL -16 779 105 782 245 73 77 chr4 13940296 13940367 -188387980 + L1ME3 LINE L1 5489 5559 -603 2107 105 3 6 chr4 13940367 13940680 -188387667 + AluSx SINE Alu 1 312 0 782 245 73 77 chr4 13940680 13940719 -188387628 + L1ME3 LINE L1 5559 5597 -565 2132 108 0 29 chr4 13940719 13941033 -188387314 + AluSx SINE Alu 1 305 -7 782 245 73 77 chr4 13941033 13941386 -188386961 + L1ME3 LINE L1 5597 5951 -211 2030 129 102 58 chr4 13941514 13941924 -188386423 - MSTC LTR MaLR 0 428 1 238 123 88 0 chr4 13943222 13943279 -188385068 + L1M4b LINE L1 1607 1668 -5191 2040 121 4 0 chr4 13943508 13943812 -188384535 - AluSg SINE Alu 0 306 2 2269 256 113 22 chr4 13943822 13944796 -188383551 + L1ME3A LINE L1 4899 5993 -177 258 32 0 0 chr4 13944796 13944827 -188383520 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2269 256 113 22 chr4 13944827 13944993 -188383354 + L1ME3A LINE L1 5993 6142 -28 25 31 0 0 chr4 13944998 13945030 -188383317 + AT_rich Low_complexity Low_complexity 1 32 0 449 271 72 54 chr4 13946532 13946698 -188381649 + MIR SINE MIR 46 214 -48 1010 139 14 43 chr4 13947049 13947219 -188381128 + MLT2C1 LTR ERVL 195 359 -38 318 26 0 0 chr4 13947219 13947258 -188381089 + (CA)n Simple_repeat Simple_repeat 2 40 0 1010 139 14 43 chr4 13947258 13947296 -188381051 + MLT2C1 LTR ERVL 359 397 0 354 314 120 8 chr4 13947820 13947961 -188380386 + MIR SINE MIR 35 188 -49 705 266 67 32 chr4 13948123 13948465 -188379882 + L1MEd LINE L1 904 1257 -4862 189 214 0 0 chr4 13948693 13948735 -188379612 + (TG)n Simple_repeat Simple_repeat 2 43 0 852 214 291 16 chr4 13950011 13950385 -188377962 - MLT1D LTR MaLR -8 497 21 2259 113 0 0 chr4 13950557 13950867 -188377480 + AluSx SINE Alu 3 312 0 448 287 132 57 chr4 13951181 13951652 -188376695 + L1M4 LINE L1 3919 4424 -1722 1076 170 0 0 chr4 13951676 13951841 -188376506 + FRAM SINE Alu 1 163 -13 466 222 144 22 chr4 13951994 13952174 -188376173 + L1M4 LINE L1 4784 4985 -1161 234 289 66 68 chr4 13952439 13952850 -188375497 + L1ME LINE L1 543 952 -5167 1206 206 0 0 chr4 13952850 13953069 -188375278 + AluJo SINE Alu 84 302 -10 261 0 0 0 chr4 13953073 13953102 -188375245 + (CA)n Simple_repeat Simple_repeat 2 30 0 580 263 36 39 chr4 13953103 13953384 -188374963 + L1ME LINE L1 973 1252 -4867 237 254 95 0 chr4 13953410 13953473 -188374874 + AluJ/FLAM SINE Alu 6 74 -228 530 170 94 0 chr4 13953473 13953579 -188374768 + AluJb SINE Alu 184 299 -13 685 198 117 133 chr4 13954046 13954354 -188373993 + AluJo SINE Alu 1 303 -9 626 229 70 38 chr4 13954368 13954525 -188373822 + FAM SINE Alu 4 165 -10 573 249 29 57 chr4 13954543 13954752 -188373595 + L1ME LINE L1 3858 4060 -2069 448 288 26 34 chr4 13954805 13955072 -188373275 + L1ME LINE L1 4166 4430 -1699 381 288 78 27 chr4 13955142 13955437 -188372910 + L1ME LINE L1 4906 5215 -914 665 333 17 3 chr4 13955520 13955808 -188372539 + L1ME LINE L1 5300 5591 -558 1968 239 52 7 chr4 13955885 13956350 -188371997 - MLT1E3 LTR MaLR 0 624 139 270 254 0 0 chr4 13956399 13956454 -188371893 - MLT1E3 LTR MaLR -589 65 11 665 296 69 5 chr4 13956540 13956756 -188371591 - MIR SINE MIR -30 232 3 879 135 6 39 chr4 13957067 13957200 -188371147 + MSTD LTR MaLR 1 130 -266 2363 151 29 7 chr4 13957200 13957617 -188370730 + MSTB LTR MaLR 1 426 0 879 135 6 39 chr4 13957617 13957639 -188370708 + MSTD LTR MaLR 130 151 -245 2272 139 0 0 chr4 13957639 13957985 -188370362 + MSTB-int LTR MaLR 24 369 -1282 2491 193 20 26 chr4 13958014 13958511 -188369836 + MSTB-int LTR MaLR 309 802 -849 1141 105 44 96 chr4 13958512 13958741 -188369606 + AluJo SINE Alu 71 287 -25 1450 220 75 46 chr4 13958807 13959261 -188369086 + MLT1C LTR MaLR 1 467 0 1770 163 35 3 chr4 13959787 13960075 -188368272 + AluJo SINE Alu 2 298 -14 1760 137 60 0 chr4 13960559 13960581 -188367766 - AluSg1 SINE Alu -8 301 282 207 0 0 0 chr4 13960581 13960604 -188367743 + (GA)n Simple_repeat Simple_repeat 1 23 0 1760 137 60 0 chr4 13960604 13960865 -188367482 - AluSg1 SINE Alu -27 282 1 1898 179 105 37 chr4 13961492 13962006 -188366341 + MER34C LTR ERV1 37 585 0 656 336 61 34 chr4 13962006 13962411 -188365936 - LTR16A LTR ERVL -18 439 16 373 323 55 24 chr4 13962435 13962562 -188365785 + MIR SINE MIR 16 146 -62 1896 162 3 3 chr4 13963239 13963541 -188364806 + AluJb SINE Alu 1 302 -10 24 32 0 0 chr4 13963788 13963819 -188364528 + AT_rich Low_complexity Low_complexity 1 31 0 273 56 0 111 chr4 13964411 13964465 -188363882 + FLAM_A SINE Alu 89 133 0 26 74 0 0 chr4 13964836 13964890 -188363457 + AT_rich Low_complexity Low_complexity 1 54 0 213 39 0 0 chr4 13964903 13964929 -188363418 + (TC)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr4 13966341 13966364 -188361983 + AT_rich Low_complexity Low_complexity 1 23 0 546 335 116 0 chr4 13968777 13969010 -188359337 + MIR SINE MIR 2 261 -1 22 56 0 0 chr4 13969682 13969718 -188358629 + AT_rich Low_complexity Low_complexity 1 36 0 225 263 88 12 chr4 13971923 13972003 -188356344 + MER5A DNA MER1_type 15 100 -89 181 215 108 21 chr4 13972118 13972211 -188356136 - MIR SINE MIR -93 169 69 235 296 49 0 chr4 13973255 13973336 -188355011 - L2 LINE L2 -6 3307 3223 355 383 52 13 chr4 13973340 13973570 -188354777 + MIR SINE MIR 15 253 -9 222 299 83 25 chr4 13974775 13974910 -188353437 - MIR SINE MIR -104 104 9 556 281 167 10 chr4 13975090 13975282 -188353065 - MIR SINE MIR -34 228 7 745 249 110 19 chr4 13975458 13975667 -188352680 - MIR SINE MIR -12 250 23 333 164 0 0 chr4 13977511 13977566 -188350781 + MIR SINE MIR 75 129 -133 181 0 69 0 chr4 13977614 13977643 -188350704 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 274 246 79 61 chr4 13977768 13977882 -188350465 + MIR3 SINE MIR 71 186 -22 314 283 48 0 chr4 13978509 13978641 -188349706 + MIR SINE MIR 48 185 -67 396 0 0 0 chr4 13978755 13978799 -188349548 + (TG)n Simple_repeat Simple_repeat 2 45 0 334 324 118 15 chr4 13979258 13979462 -188348885 - MIR SINE MIR -12 250 26 207 191 0 0 chr4 13979634 13979676 -188348671 + MIR SINE MIR 99 140 -68 257 304 234 5 chr4 13979732 13979916 -188348431 + MIR SINE MIR 32 257 -5 202 194 337 0 chr4 13980469 13980567 -188347780 + L2 LINE L2 3175 3305 -8 25 0 0 0 chr4 13980890 13980915 -188347432 + AT_rich Low_complexity Low_complexity 1 25 0 2130 105 0 41 chr4 13981609 13981924 -188346423 - AluSc SINE Alu -4 305 4 180 258 212 0 chr4 13981971 13982037 -188346310 - L2 LINE L2 -5 3267 3188 254 301 0 0 chr4 13982177 13982260 -188346087 + C-rich Low_complexity Low_complexity 1 83 0 216 0 0 0 chr4 13983885 13983909 -188344438 + (T)n Simple_repeat Simple_repeat 1 24 0 241 262 49 0 chr4 13984323 13984384 -188343963 - MIR SINE MIR -82 126 63 292 216 0 0 chr4 13985811 13985862 -188342485 + MIR SINE MIR 93 143 -65 681 64 45 0 chr4 13987076 13987186 -188341161 + CT-rich Low_complexity Low_complexity 4 118 0 198 167 0 0 chr4 13987186 13987222 -188341125 + (CA)n Simple_repeat Simple_repeat 1 36 0 220 301 133 0 chr4 13987349 13987432 -188340915 + MIR3 SINE MIR 99 192 -16 204 118 40 40 chr4 13987619 13987695 -188340652 + GA-rich Low_complexity Low_complexity 2 77 0 607 226 54 11 chr4 13990486 13990672 -188337675 - MER91A DNA MER1_type 0 196 3 223 239 14 0 chr4 13991116 13991187 -188337160 + (CCG)n Simple_repeat Simple_repeat 3 74 0 21 71 0 0 chr4 13992787 13992829 -188335518 + GC_rich Low_complexity Low_complexity 1 42 0 25 65 0 0 chr4 13993025 13993071 -188335276 + GC_rich Low_complexity Low_complexity 1 46 0 203 147 0 0 chr4 13993638 13993672 -188334675 + (CGG)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr4 13996145 13996168 -188332179 + GC_rich Low_complexity Low_complexity 1 23 0 214 200 0 27 chr4 13996270 13996345 -188332002 + CT-rich Low_complexity Low_complexity 1 73 0 193 286 104 13 chr4 13996723 13996800 -188331547 + MIR3 SINE MIR 86 169 -39 21 36 0 0 chr4 13997106 13997134 -188331213 + AT_rich Low_complexity Low_complexity 1 28 0 289 211 133 70 chr4 13997150 13997278 -188331069 - MIR SINE MIR -10 252 117 236 268 134 0 chr4 13997691 13997773 -188330574 + MIR3 SINE MIR 79 171 -37 2171 113 0 0 chr4 13998227 13998553 -188329794 - AluSq SINE Alu 0 326 1 2043 102 26 0 chr4 13998646 13998912 -188329435 - AluSx SINE Alu -37 275 3 798 334 86 40 chr4 13999178 13999361 -188328986 - L2 LINE L2 -27 3286 3113 7411 164 35 0 chr4 13999361 14001495 -188326852 + L1PA13 LINE L1 4022 6163 0 798 334 86 40 chr4 14001495 14001651 -188326696 - L2 LINE L2 -200 3113 2966 1158 165 101 141 chr4 14001651 14002026 -188326321 + MLT1A1 LTR MaLR 4 363 -2 798 334 86 40 chr4 14002026 14002394 -188325953 - L2 LINE L2 -347 2966 2529 3761 154 42 1 chr4 14002425 14002923 -188325424 - L1MB3 LINE L1 -16 6167 5634 423 0 0 0 chr4 14002923 14002970 -188325377 + (TG)n Simple_repeat Simple_repeat 2 48 0 3761 154 42 1 chr4 14002970 14003144 -188325203 - L1MB3 LINE L1 -549 5634 5468 2386 162 0 44 chr4 14003144 14003604 -188324743 - L1MB2 LINE L1 0 6171 5718 376 214 10 20 chr4 14003615 14003713 -188324634 + L1MA8 LINE L1 5905 6001 -290 379 266 0 0 chr4 14004141 14004220 -188324127 + MIR SINE MIR 70 148 -114 443 182 0 0 chr4 14004225 14004302 -188324045 + MLT1F LTR MaLR 1 77 -465 2139 165 19 9 chr4 14004302 14004733 -188323614 - L1MB2 LINE L1 -446 5725 5291 * 6250 35 4 0 chr4 14004715 14004851 -188323496 - L1PA5 LINE L1 0 6154 6019 2324 233 40 18 chr4 14004851 14005605 -188322742 - L1MA1 LINE L1 -269 6033 5201 1740 318 61 31 chr4 14005623 14006538 -188321809 - L2 LINE L2 -810 2504 1562 325 177 0 0 chr4 14006573 14006635 -188321712 - L1ME LINE L1 -5103 967 906 522 227 45 53 chr4 14006710 14006766 -188321581 + MER113 DNA MER1_type? 160 215 -306 1554 222 10 3 chr4 14006766 14007063 -188321284 + AluJo SINE Alu 1 299 -13 522 227 45 53 chr4 14007063 14007084 -188321263 + MER113 DNA MER1_type? 215 235 -286 1582 188 44 7 chr4 14007084 14007377 -188320970 + AluJo SINE Alu 1 304 -8 522 227 45 53 chr4 14007377 14007545 -188320802 + MER113 DNA MER1_type? 235 404 -117 918 230 14 9 chr4 14007547 14007769 -188320578 + L1ME3A LINE L1 5651 5873 -297 403 219 14 0 chr4 14007781 14007854 -188320493 + L2 LINE L2 3237 3310 -3 218 323 141 0 chr4 14007843 14007942 -188320405 - MIR SINE MIR -57 205 93 * 2179 124 35 32 chr4 14008860 14009232 -188319115 - THE1C LTR MaLR -2 373 1 2414 93 3 0 chr4 14009538 14009838 -188318509 - AluSc SINE Alu -8 301 1 1108 254 163 3 chr4 14009917 14010433 -188317914 + LTR50 LTR ERVL 1 684 -111 2067 163 48 11 chr4 14010461 14010835 -188317512 - MSTD LTR MaLR 0 396 9 495 263 145 0 chr4 14011491 14011677 -188316670 + HAL1 LINE L1 1673 1885 -622 870 256 48 23 chr4 14011910 14011984 -188316363 + L1ME4a LINE L1 5129 5200 -962 345 24 0 0 chr4 14011984 14012026 -188316321 + (TG)n Simple_repeat Simple_repeat 2 43 0 870 256 48 23 chr4 14012026 14012434 -188315913 + L1ME4a LINE L1 5200 5631 -531 26 0 0 0 chr4 14012754 14012780 -188315567 + AT_rich Low_complexity Low_complexity 1 26 0 390 212 65 12 chr4 14012780 14012950 -188315397 + L1ME4a LINE L1 5786 5964 -206 1099 68 0 8 chr4 14013083 14013215 -188315132 - AluY SINE Alu -180 131 1 1939 254 92 24 chr4 14013289 14013962 -188314385 + HsTC2c DNA Tc2 4 722 -7 315 258 104 18 chr4 14013969 14014132 -188314215 + L1ME4a LINE L1 5939 6115 -6 2024 132 0 0 chr4 14014148 14014451 -188313896 - AluSx SINE Alu 0 306 4 230 344 65 11 chr4 14014570 14014663 -188313684 + MIR SINE MIR 45 142 -66 405 228 53 9 chr4 14014788 14014902 -188313445 + MER103 DNA DNA 3 121 -45 198 338 28 14 chr4 14015705 14015776 -188312571 + MIR SINE MIR 21 92 -116 404 243 48 42 chr4 14016202 14016356 -188311991 - MER20B DNA MER1_type -21 198 41 3098 121 23 0 chr4 14016692 14017172 -188311175 - L1PA16 LINE L1 -261 5905 5415 23 0 0 0 chr4 14017473 14017496 -188310851 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr4 14018236 14018269 -188310078 + AT_rich Low_complexity Low_complexity 1 33 0 377 301 24 16 chr4 14019054 14019177 -188309170 + MIR SINE MIR 23 146 -62 303 268 84 17 chr4 14019689 14019868 -188308479 - MER112 DNA MER1_type -65 195 5 415 289 44 15 chr4 14019873 14020008 -188308339 + L2 LINE L2 3133 3271 -1 409 272 184 7 chr4 14020357 14020504 -188307843 + MER5A DNA MER1_type 9 181 -8 209 296 204 9 chr4 14020517 14020625 -188307722 + MIR SINE MIR 106 234 -28 382 313 191 16 chr4 14021818 14022138 -188306209 + L3 LINE CR1 711 1086 -491 429 138 0 0 chr4 14022138 14022218 -188306129 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 1991 159 0 0 chr4 14022246 14022548 -188305799 - AluSx SINE Alu -10 302 1 26 0 0 0 chr4 14022550 14022576 -188305771 + AT_rich Low_complexity Low_complexity 1 26 0 811 137 24 0 chr4 14022576 14022700 -188305647 - FLAM_A SINE Alu -6 127 1 381 277 245 18 chr4 14022778 14023056 -188305291 + L3 LINE CR1 1230 1570 -7 2468 77 0 10 chr4 14023632 14023943 -188304404 - AluSg SINE Alu -2 308 1 27 0 0 0 chr4 14024090 14024117 -188304230 + AT_rich Low_complexity Low_complexity 1 27 0 1987 127 10 14 chr4 14024117 14024408 -188303939 - AluJo SINE Alu -22 290 1 234 170 0 0 chr4 14024563 14024610 -188303737 + MER103 DNA DNA 27 73 -93 2337 95 3 0 chr4 14024620 14024924 -188303423 - AluSc SINE Alu -4 305 1 249 241 0 0 chr4 14025609 14025667 -188302680 + CT-rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr4 14026008 14026031 -188302316 + AT_rich Low_complexity Low_complexity 1 23 0 258 295 279 8 chr4 14026505 14026627 -188301720 + MIR3 SINE MIR 5 159 -49 2271 104 0 7 chr4 14026631 14026930 -188301417 - AluSx SINE Alu -15 297 1 1132 152 71 9 chr4 14027048 14027258 -188301089 + MER46A DNA MER2_type 1 223 -13 944 198 0 0 chr4 14027273 14027440 -188300907 - FRAM SINE Alu -13 163 1 197 305 181 9 chr4 14027473 14027578 -188300769 - MIR SINE MIR -108 154 32 301 273 25 16 chr4 14028307 14028428 -188299919 - L1ME4a LINE L1 -23 6098 5977 420 281 30 55 chr4 14028986 14029185 -188299162 - MIR SINE MIR -44 218 25 1038 238 22 118 chr4 14032265 14032911 -188295436 - Charlie7 DNA MER1_type -1989 623 40 210 282 0 0 chr4 14033088 14033166 -188295181 + GA-rich Low_complexity Low_complexity 1 78 0 378 0 0 0 chr4 14033166 14033208 -188295139 + (TG)n Simple_repeat Simple_repeat 2 43 0 25 51 0 0 chr4 14033723 14033762 -188294585 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr4 14034081 14034106 -188294241 + AT_rich Low_complexity Low_complexity 1 25 0 2630 107 3 3 chr4 14034367 14034731 -188293616 + THE1B LTR MaLR 1 364 0 354 326 51 2 chr4 14035519 14035718 -188292629 + MIR SINE MIR 4 249 -13 24 0 0 0 chr4 14035725 14035749 -188292598 + AT_rich Low_complexity Low_complexity 1 24 0 798 236 50 0 chr4 14035826 14036025 -188292322 - MER3 DNA MER1_type 0 209 1 21 0 0 0 chr4 14036596 14036617 -188291730 + AT_rich Low_complexity Low_complexity 1 21 0 2280 84 7 10 chr4 14036628 14036937 -188291410 + AluY SINE Alu 1 308 -3 300 239 63 88 chr4 14037046 14037205 -188291142 + MER104 DNA Tc2 1 155 -25 24 67 0 0 chr4 14037522 14037567 -188290780 + AT_rich Low_complexity Low_complexity 1 45 0 229 363 38 6 chr4 14037621 14037781 -188290566 - MIR SINE MIR -14 248 84 390 284 96 46 chr4 14037930 14038169 -188290178 + L1ME LINE L1 5539 5789 -381 369 355 49 6 chr4 14038893 14039076 -188289271 + MIR SINE MIR 71 261 -1 23 54 0 0 chr4 14039765 14039802 -188288545 + AT_rich Low_complexity Low_complexity 1 37 0 715 208 8 0 chr4 14039802 14039927 -188288420 - FLAM_A SINE Alu -7 126 1 1222 183 26 0 chr4 14041708 14041938 -188286409 + MER46A DNA MER2_type 1 236 0 23 54 0 0 chr4 14042171 14042208 -188286139 + AT_rich Low_complexity Low_complexity 1 37 0 254 242 250 25 chr4 14043163 14043283 -188285064 + Charlie1 DNA MER1_type 14 160 -2601 1412 180 55 59 chr4 14043288 14043348 -188284999 + Charlie1 DNA MER1_type 2309 2368 -393 2109 107 0 4 chr4 14043348 14043660 -188284687 + AluSc SINE Alu 10 309 0 1412 180 55 59 chr4 14043660 14044054 -188284293 + Charlie1 DNA MER1_type 2368 2761 0 298 327 50 20 chr4 14044946 14045145 -188283202 + L2 LINE L2 2845 3049 -223 795 335 103 22 chr4 14045251 14045660 -188282687 - L2 LINE L2 -470 2844 2403 209 288 213 0 chr4 14046623 14046703 -188281644 + MIR3 SINE MIR 111 207 -1 212 209 0 0 chr4 14047148 14047191 -188281156 - MIR SINE MIR -110 152 110 214 293 40 71 chr4 14047219 14047318 -188281029 + MIR SINE MIR 87 182 -80 250 302 0 9 chr4 14055278 14055394 -188272953 + L1ME LINE L1 5708 5822 -299 2146 126 7 0 chr4 14056012 14056322 -188272025 - AluSq SINE Alu -1 312 1 230 281 0 0 chr4 14058267 14058324 -188270023 + (TA)n Simple_repeat Simple_repeat 2 58 0 1727 161 79 0 chr4 14059135 14059465 -188268882 + MER46B DNA MER2_type 1 231 -5 954 259 43 31 chr4 14060055 14060406 -188267941 - MER93b LTR ERV1 0 373 19 575 255 210 0 chr4 14061112 14061312 -188267035 + MIR SINE MIR 2 243 -19 203 260 0 0 chr4 14061278 14061328 -188267019 + L2 LINE L2 3214 3263 -9 * 1740 251 65 17 chr4 14061363 14061895 -188266452 + MER77 LTR ERV1 58 601 -4 23 0 0 0 chr4 14061983 14062006 -188266341 + AT_rich Low_complexity Low_complexity 1 23 0 258 357 23 23 chr4 14062026 14062156 -188266191 - MIR SINE MIR -75 133 1 23 86 0 0 chr4 14062552 14062610 -188265737 + AT_rich Low_complexity Low_complexity 1 58 0 200 149 21 64 chr4 14063059 14063106 -188265241 + CT-rich Low_complexity Low_complexity 4 48 0 302 288 131 74 chr4 14064812 14065163 -188263184 - L2 LINE L2 0 3313 2943 2341 93 3 10 chr4 14065689 14066000 -188262347 + AluSc SINE Alu 1 309 0 448 163 0 0 chr4 14066421 14066501 -188261846 + MER116 DNA Mariner 1 80 0 234 342 0 0 chr4 14066679 14066758 -188261589 - L3b LINE CR1 -121 1462 1384 228 242 21 63 chr4 14067242 14067337 -188261010 - L3b LINE CR1 -390 1193 1103 1507 176 67 7 chr4 14067765 14068049 -188260298 + AluJo SINE Alu 1 301 -11 180 246 18 53 chr4 14068288 14068345 -188260002 + MIR SINE MIR 118 172 -90 182 261 0 76 chr4 14069113 14069205 -188259142 + L3 LINE CR1 831 915 -662 1175 180 18 31 chr4 14069603 14069825 -188258522 + MER20 DNA MER1_type 1 219 0 1949 163 7 0 chr4 14070588 14070889 -188257458 - AluSx SINE Alu -9 303 1 253 173 0 19 chr4 14071138 14071190 -188257157 - L1MC4 LINE L1 -1332 6710 6660 875 257 89 72 chr4 14071217 14072035 -188256312 + L2 LINE L2 2428 3313 0 1693 141 0 8 chr4 14073150 14073406 -188254941 - AluSx SINE Alu -19 293 40 869 146 34 28 chr4 14073751 14073929 -188254418 - Charlie2 DNA MER1_type -649 2213 2035 2131 78 92 0 chr4 14074791 14075073 -188253274 + AluSc SINE Alu 1 308 -1 244 275 0 25 chr4 14075173 14075253 -188253094 + L2 LINE L2 2017 2094 -1220 44 35 0 0 chr4 14076164 14076222 -188252125 + GC_rich Low_complexity Low_complexity 1 58 0 339 137 0 0 chr4 14076222 14076295 -188252052 + (CGG)n Simple_repeat Simple_repeat 1 73 0 658 267 11 6 chr4 14077105 14077285 -188251062 - MIR SINE MIR -10 252 72 4203 213 98 68 chr4 14077291 14077977 -188250370 - Charlie2a DNA MER1_type -492 2370 1706 1764 155 10 7 chr4 14077977 14078274 -188250073 + AluJo SINE Alu 3 300 -12 4203 213 98 68 chr4 14078274 14078494 -188249853 - Charlie2a DNA MER1_type -1156 1706 1494 1093 214 153 0 chr4 14078494 14078756 -188249591 + AluJo SINE Alu 1 302 0 4203 213 98 68 chr4 14078756 14078827 -188249520 - Charlie2a DNA MER1_type -1368 1494 1427 2558 62 0 7 chr4 14078827 14079136 -188249211 + AluY SINE Alu 1 307 -4 4203 213 98 68 chr4 14079136 14079903 -188248444 - Charlie2a DNA MER1_type -1435 1427 572 2406 77 0 7 chr4 14080192 14080491 -188247856 - AluY SINE Alu -14 297 1 1929 142 0 26 chr4 14080907 14081210 -188247137 - AluSx SINE Alu -17 295 1 341 298 61 9 chr4 14081371 14081485 -188246862 - Charlie2a DNA MER1_type -2298 564 445 431 169 0 0 chr4 14082058 14082123 -188246224 - Tigger7 DNA MER2_type -1 2486 2422 2155 132 3 0 chr4 14082141 14082445 -188245902 + AluSx SINE Alu 1 305 -7 1223 197 105 4 chr4 14082483 14082722 -188245625 - Tigger7 DNA MER2_type -2222 265 3 591 276 13 13 chr4 14083243 14083395 -188244952 - MER5A DNA MER1_type -1 188 37 348 215 46 0 chr4 14083423 14083488 -188244859 + MER58A DNA MER1_type 9 76 -31 192 40 0 0 chr4 14083825 14083850 -188244497 + (TG)n Simple_repeat Simple_repeat 2 26 0 26 0 0 0 chr4 14084017 14084043 -188244304 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr4 14085403 14085433 -188242914 + AT_rich Low_complexity Low_complexity 1 30 0 490 78 0 26 chr4 14086051 14086128 -188242219 + MADE1 DNA Mariner 6 80 0 367 241 80 0 chr4 14086497 14086609 -188241738 + MIR SINE MIR 53 173 -89 907 293 119 20 chr4 14086636 14087165 -188241182 - L2 LINE L2 -5 3308 2717 202 175 0 0 chr4 14087243 14087283 -188241064 - MIR SINE MIR -71 191 152 2206 103 0 3 chr4 14087400 14087690 -188240657 - AluSg SINE Alu -16 294 6 587 174 66 0 chr4 14088749 14088870 -188239477 - MER63 DNA MER1_type -296 766 12 315 225 50 42 chr4 14089586 14089706 -188238641 + MIR SINE MIR 47 167 -95 2335 132 20 39 chr4 14089882 14090290 -188238057 - MER57A LTR ERV1 -3 400 1 216 122 0 0 chr4 14090383 14090424 -188237923 + (TC)n Simple_repeat Simple_repeat 2 42 0 223 368 9 9 chr4 14090850 14090956 -188237391 + MIR SINE MIR 37 142 -120 183 186 0 0 chr4 14090958 14091001 -188237346 + CT-rich Low_complexity Low_complexity 2 44 0 472 303 23 17 chr4 14091013 14091188 -188237159 - MER5B DNA MER1_type -2 176 1 235 254 56 0 chr4 14091633 14091704 -188236643 - MIR SINE MIR -104 158 84 1241 186 0 14 chr4 14093094 14093315 -188235032 - AluJb SINE Alu -10 302 85 583 231 16 0 chr4 14093632 14093753 -188234594 + MER58A DNA MER1_type 40 162 0 301 313 133 26 chr4 14093895 14094090 -188234257 - L3 LINE CR1 -2 1575 1360 2128 128 3 3 chr4 14094911 14095209 -188233138 - AluSx SINE Alu -14 298 1 238 284 45 0 chr4 14095414 14095481 -188232866 - MER113 DNA MER1_type? 0 521 452 285 247 0 0 chr4 14095592 14095673 -188232674 - MER113 DNA MER1_type? -398 123 43 180 328 0 0 chr4 14095683 14095741 -188232606 + L3 LINE CR1 1516 1573 -4 333 0 0 0 chr4 14096341 14096378 -188231969 + (TG)n Simple_repeat Simple_repeat 2 38 0 2390 71 0 7 chr4 14097395 14097691 -188230656 - AluY SINE Alu -9 302 9 509 249 94 22 chr4 14097861 14098042 -188230305 + MER117 DNA MER1_type 4 197 0 2527 174 16 53 chr4 14098210 14098394 -188229953 + MER70A LTR ERVL 1 190 -282 1790 71 12 28 chr4 14098394 14098646 -188229701 + L1PA7 LINE L1 5907 6154 0 2527 174 16 53 chr4 14098646 14098951 -188229396 + MER70A LTR ERVL 190 472 0 254 323 16 55 chr4 14098951 14099078 -188229269 - MIR SINE MIR -113 149 28 2198 208 27 37 chr4 14099166 14099203 -188229144 - L1ME3 LINE L1 -32 6130 6094 2083 145 0 3 chr4 14099203 14099500 -188228847 - AluSq SINE Alu -17 296 1 2198 208 27 37 chr4 14099500 14100009 -188228338 - L1ME3 LINE L1 -68 6094 5589 1693 202 33 22 chr4 14100016 14100377 -188227970 + MLT1A1 LTR MaLR 1 365 0 355 306 9 0 chr4 14100402 14100513 -188227834 + L2 LINE L2 3202 3313 0 1424 259 106 17 chr4 14100619 14101137 -188227210 - MER20B DNA MER1_type -22 761 198 188 379 24 24 chr4 14101267 14101391 -188226956 - MIR3 SINE MIR -49 159 36 544 285 149 9 chr4 14101417 14101638 -188226709 + MIR SINE MIR 10 261 -1 303 314 6 57 chr4 14101964 14102139 -188226208 - MIR SINE MIR -16 246 81 3270 122 28 35 chr4 14102157 14102731 -188225616 + MER4B LTR ERV1 5 574 -36 373 194 28 0 chr4 14102783 14102855 -188225492 - LTR16C LTR ERVL 0 491 418 21 36 0 0 chr4 14102855 14102883 -188225464 + AT_rich Low_complexity Low_complexity 1 28 0 283 262 47 54 chr4 14102884 14103033 -188225314 + LTR41 LTR ERVL 21 168 -605 327 238 86 29 chr4 14103600 14103705 -188224642 + LTR41 LTR ERVL 657 767 -6 586 262 92 71 chr4 14103734 14104028 -188224319 - LTR16C LTR ERVL -107 384 85 289 200 85 62 chr4 14104919 14105049 -188223298 + L1MC4a LINE L1 5847 5979 -1829 189 74 0 0 chr4 14105779 14105806 -188222541 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 379 307 0 0 chr4 14105964 14106065 -188222282 - MIR SINE MIR -119 143 43 849 276 93 21 chr4 14106616 14106956 -188221391 - MER113 DNA MER1_type? -48 473 94 2239 68 0 0 chr4 14106956 14107221 -188221126 + AluY SINE Alu 30 294 -17 849 276 93 21 chr4 14107221 14107312 -188221035 - MER113 DNA MER1_type? -427 94 11 1710 179 0 10 chr4 14107314 14107605 -188220742 + AluJb SINE Alu 1 288 -24 403 239 110 0 chr4 14107720 14107829 -188220518 - MIR3 SINE MIR -6 202 82 227 265 0 0 chr4 14107853 14107902 -188220445 + (TG)n Simple_repeat Simple_repeat 2 50 0 313 156 78 11 chr4 14109073 14109163 -188219184 - MIR SINE MIR -1 261 166 252 0 0 0 chr4 14109949 14109977 -188218370 + (TTA)n Simple_repeat Simple_repeat 3 30 0 20983 27 2 0 chr4 14109977 14113193 -188215154 - L1PA3 LINE L1 -18 6137 2919 6075 63 1 9 chr4 14113200 14113980 -188214367 - L1PA3 LINE L1 -5370 776 3 2171 176 11 8 chr4 14114071 14114435 -188213912 - MLT1A1 LTR MaLR 0 365 1 2214 218 92 40 chr4 14114442 14115083 -188213264 - MLT1A1-int LTR MaLR -8 1727 880 3261 115 10 49 chr4 14115089 14115602 -188212745 + LTR3b LTR ERVK 1 493 -7 4080 198 36 31 chr4 14115670 14116510 -188211837 - MLT1A1-int LTR MaLR -890 845 2 1817 199 16 40 chr4 14116510 14116882 -188211465 - MLT1A1 LTR MaLR -2 363 1 21 36 0 0 chr4 14116974 14117002 -188211345 + AT_rich Low_complexity Low_complexity 1 28 0 367 346 15 15 chr4 14117004 14117140 -188211207 - MIR SINE MIR -117 145 10 183 310 17 17 chr4 14117800 14117858 -188210489 - L2 LINE L2 -52 3220 3163 226 343 0 0 chr4 14117990 14118063 -188210284 + L2 LINE L2 3227 3299 -14 213 371 103 0 chr4 14118177 14118390 -188209957 - MIR SINE MIR -6 256 22 288 0 0 0 chr4 14118645 14118677 -188209670 + (T)n Simple_repeat Simple_repeat 1 32 0 2198 116 0 0 chr4 14118677 14118978 -188209369 - SVA Other Other -216 1170 870 279 0 0 0 chr4 14119172 14119203 -188209144 + (T)n Simple_repeat Simple_repeat 1 31 0 4787 73 7 108 chr4 14119203 14120340 -188208007 - SVA Other Other -709 1170 433 2385 73 0 7 chr4 14121288 14121591 -188206756 - AluY SINE Alu -10 301 1 379 274 173 44 chr4 14121660 14121686 -188206661 - MIR SINE MIR 0 262 241 1815 182 25 6 chr4 14121686 14122044 -188206303 - MLT1A1 LTR MaLR 0 365 1 379 274 173 44 chr4 14122044 14122243 -188206104 - MIR SINE MIR -21 241 8 1032 217 48 13 chr4 14122354 14122667 -188205680 - MER33 DNA MER1_type 0 324 1 1775 176 17 62 chr4 14122750 14123154 -188205193 - MLT1B LTR MaLR -2 388 3 345 310 20 0 chr4 14123211 14123311 -188205036 - MIR SINE MIR -104 158 57 4663 212 15 4 chr4 14123351 14124609 -188203738 + L1PA15-16 LINE L1 2008 3280 -3569 1202 197 43 35 chr4 14125033 14125543 -188202804 + MLT1C LTR MaLR 1 467 0 281 308 137 0 chr4 14127002 14127119 -188201228 + MIR SINE MIR 101 233 -29 600 252 40 122 chr4 14127121 14127399 -188200948 - MIR SINE MIR 0 262 8 2161 148 11 3 chr4 14127854 14128211 -188200136 - L1PB4 LINE L1 -8 6148 5789 201 268 18 0 chr4 14128212 14128268 -188200079 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 290 266 0 25 chr4 14128447 14128526 -188199821 + (CATATA)n Simple_repeat Simple_repeat 6 82 0 320 244 17 28 chr4 14128527 14128707 -188199640 + (CATA)n Simple_repeat Simple_repeat 1 178 0 572 128 11 0 chr4 14128719 14128813 -188199534 - L1PB4 LINE L1 -379 5777 5683 297 302 157 6 chr4 14128816 14128975 -188199372 - MIR3 SINE MIR -10 198 16 266 342 13 0 chr4 14129811 14129887 -188198460 - MIR SINE MIR -102 106 30 1815 202 41 137 chr4 14129887 14130324 -188198023 - MER89 LTR ERV1 0 559 196 566 86 0 12 chr4 14130324 14130405 -188197942 - MADE1 DNA Mariner 0 80 1 1815 202 41 137 chr4 14130405 14130580 -188197767 - MER89 LTR ERV1 -363 196 6 1040 226 9 18 chr4 14130604 14130830 -188197517 - MER58A DNA MER1_type 0 224 1 25 0 0 0 chr4 14130997 14131022 -188197325 + AT_rich Low_complexity Low_complexity 1 25 0 735 296 40 40 chr4 14131267 14131665 -188196682 - MLT1L LTR MaLR -211 404 7 484 272 74 32 chr4 14132012 14132229 -188196118 + MIR SINE MIR 22 247 -15 281 331 42 49 chr4 14132927 14133069 -188195278 + L2 LINE L2 3172 3312 -1 239 246 0 0 chr4 14133441 14133498 -188194849 - MER117 DNA MER1_type -136 61 5 206 305 66 71 chr4 14133951 14134148 -188194199 + L3 LINE CR1 1119 1314 -263 1571 26 11 11 chr4 14134486 14134677 -188193670 + L1PA7 LINE L1 5964 6154 0 22 35 0 0 chr4 14134849 14134878 -188193469 + AT_rich Low_complexity Low_complexity 1 29 0 4807 164 16 24 chr4 14134879 14135892 -188192455 - L1MA7 LINE L1 -2 6493 5481 1916 152 45 31 chr4 14135892 14136248 -188192099 + THE1B LTR MaLR 4 364 0 4807 164 16 24 chr4 14136248 14136557 -188191790 - L1MA7 LINE L1 -1014 5481 5171 3611 277 50 33 chr4 14136674 14136969 -188191378 - L1MA7 LINE L1 -2881 3469 3180 2211 84 3 20 chr4 14136969 14137266 -188191081 - AluSp SINE Alu -1 312 21 3611 277 50 33 chr4 14137266 14139921 -188188426 - L1MA7 LINE L1 -3170 3180 827 4292 162 16 12 chr4 14140153 14140975 -188187372 - L1MA4 LINE L1 -13 6287 5463 13552 171 25 30 chr4 14140976 14142073 -188186274 - L1PA13 LINE L1 -2 6863 5762 1405 180 149 7 chr4 14142073 14142368 -188185979 - MER1B DNA MER1_type 0 337 1 13552 171 25 30 chr4 14142368 14142453 -188185894 - L1PA13 LINE L1 -1103 5762 5678 1912 82 0 4 chr4 14142453 14142698 -188185649 - AluSq SINE Alu -7 306 63 13552 171 25 30 chr4 14142698 14145813 -188182534 - L1PA13 LINE L1 -1187 5678 2596 287 380 25 4 chr4 14145932 14146158 -188182189 - L1MA7 LINE L1 -4722 628 374 384 337 86 7 chr4 14146200 14146491 -188181856 - L2 LINE L2 -455 2859 2546 345 315 58 12 chr4 14146802 14147059 -188181288 - L1ME4a LINE L1 -162 5959 5691 * 1676 236 34 9 chr4 14147055 14147522 -188180825 + L1ME2 LINE L1 5685 6163 -1 509 184 48 8 chr4 14148133 14148258 -188180089 + L1ME2 LINE L1 6026 6155 -9 233 188 43 103 chr4 14149428 14149545 -188178802 - L1ME3 LINE L1 -59 6103 5994 481 185 0 0 chr4 14149598 14149679 -188178668 + MER81 DNA DNA 19 99 -15 733 269 33 5 chr4 14149698 14149957 -188178390 - L1ME3 LINE L1 -184 5978 5709 1681 220 25 8 chr4 14150051 14150410 -188177937 - MLT1A1 LTR MaLR 0 365 1 10369 194 8 4 chr4 14150509 14153434 -188174913 - L1PA13 LINE L1 0 6163 3220 396 217 163 90 chr4 14153436 14153607 -188174740 - MIR SINE MIR -58 150 3 226 259 35 47 chr4 14154670 14154755 -188173592 - MIR3 SINE MIR -28 180 97 645 221 61 9 chr4 14154842 14155073 -188173274 - L1ME4a LINE L1 0 6121 5879 2981 101 16 0 chr4 14155106 14155540 -188172807 + LTR9 LTR ERV1 1 441 -171 1432 99 0 0 chr4 14155578 14155760 -188172587 - AluY SINE Alu -129 182 1 1000 101 5 139 chr4 14155764 14155973 -188172374 + LTR9 LTR ERV1 432 612 0 279 264 11 0 chr4 14155974 14156061 -188172286 - L1ME4a LINE L1 -272 5849 5762 233 293 38 9 chr4 14156461 14156567 -188171780 + T-rich Low_complexity Low_complexity 3 111 0 * 282 263 13 13 chr4 14156495 14156571 -188171776 + CT-rich Low_complexity Low_complexity 4 79 0 952 198 39 0 chr4 14156572 14156804 -188171543 - L1MA9 LINE L1 0 6312 6072 572 316 23 35 chr4 14157019 14157275 -188171072 + MIR SINE MIR 2 254 -8 1968 192 27 64 chr4 14158242 14158726 -188169621 - MLT1C LTR MaLR -1 466 1 377 250 55 23 chr4 14159523 14159537 -188168810 + MIR3 SINE MIR 76 88 -120 2358 97 3 0 chr4 14159537 14159847 -188168500 + AluY SINE Alu 1 311 0 377 250 55 23 chr4 14159847 14159960 -188168387 + MIR3 SINE MIR 88 207 -1 412 299 37 30 chr4 14160330 14160494 -188167853 - MIR SINE MIR -95 167 3 1872 52 8 24 chr4 14160725 14160973 -188167374 - L1PA6 LINE L1 -4 6150 5907 273 247 21 52 chr4 14161452 14161549 -188166798 + MIR SINE MIR 41 134 -128 1742 163 49 0 chr4 14161701 14161989 -188166358 - AluSx SINE Alu -10 302 1 459 288 53 43 chr4 14162249 14162530 -188165817 + MLT1K LTR MaLR 199 482 -106 1730 203 158 49 chr4 14162839 14163014 -188165333 + MER76 LTR ERV 1 156 -532 1995 110 0 7 chr4 14163014 14163319 -188165028 + AluSc SINE Alu 1 303 0 1730 203 158 49 chr4 14163319 14163732 -188164615 + MER76 LTR ERV 156 654 -34 342 277 143 9 chr4 14163868 14163980 -188164367 + MER5B DNA MER1_type 47 173 -5 256 313 96 60 chr4 14163969 14164135 -188164212 + MER5A DNA MER1_type 12 183 -6 * 252 59 0 0 chr4 14164156 14164190 -188164157 + (TG)n Simple_repeat Simple_repeat 2 35 0 538 272 15 67 chr4 14164344 14164492 -188163855 + MIR SINE MIR 78 215 -47 1272 179 27 62 chr4 14164492 14164828 -188163519 + MER33 DNA MER1_type 1 324 0 538 272 15 67 chr4 14164828 14164874 -188163473 + MIR SINE MIR 215 262 0 1582 198 105 5 chr4 14165318 14165727 -188162620 + MLT1C LTR MaLR 6 455 -12 210 238 36 83 chr4 14167119 14167203 -188161144 + L2 LINE L2 2435 2514 -800 365 310 54 8 chr4 14168037 14168201 -188160146 + MIR SINE MIR 8 184 -57 357 283 21 14 chr4 14168730 14168875 -188159472 + MER117 DNA MER1_type 3 148 -49 342 301 183 18 chr4 14169507 14169726 -188158621 + MIR SINE MIR 5 259 -3 207 310 130 10 chr4 14171195 14171295 -188157052 - MIR SINE MIR -63 145 34 1440 168 0 0 chr4 14171984 14172216 -188156131 - AluJb SINE Alu -7 305 74 299 125 0 0 chr4 14172219 14172259 -188156088 - AluSp SINE Alu -130 173 134 854 159 0 0 chr4 14172259 14172391 -188155956 - AluJo/FLAM SINE Alu -169 133 2 1923 245 34 11 chr4 14172569 14173006 -188155341 - MER21B LTR ERV1 -319 544 98 1380 333 46 46 chr4 14173031 14173709 -188154638 - HERV16 LTR ERVL -4285 711 31 1809 58 4 46 chr4 14173709 14173950 -188154397 + L1PA10 LINE L1 5938 6168 0 1380 333 46 46 chr4 14173950 14173982 -188154365 - HERV16 LTR ERVL -4964 32 1 648 304 92 42 chr4 14173988 14174209 -188154138 - LTR16A LTR ERVL -10 440 231 1692 214 87 16 chr4 14174209 14174579 -188153768 + MSTD LTR MaLR 1 396 0 648 304 92 42 chr4 14174579 14174758 -188153589 - LTR16A LTR ERVL -219 231 20 5018 195 44 67 chr4 14175248 14176314 -188152033 - L1MD1 LINE L1 0 6242 5153 3310 82 29 13 chr4 14176314 14176768 -188151579 - L1MA1 LINE L1 0 6302 5842 263 132 0 0 chr4 14176768 14176806 -188151541 + 5S rRNA rRNA 3 40 -81 5018 195 44 67 chr4 14176806 14177577 -188150770 - L1MD1 LINE L1 -1087 5155 4421 191 250 53 26 chr4 14177634 14177710 -188150637 + MIR SINE MIR 143 220 -42 182 291 97 30 chr4 14177770 14177904 -188150443 + MIR SINE MIR 70 212 -50 29 28 0 0 chr4 14178046 14178082 -188150265 + AT_rich Low_complexity Low_complexity 1 36 0 201 74 0 0 chr4 14178562 14178589 -188149758 + (CAGTT)n Simple_repeat Simple_repeat 1 27 0 270 300 80 10 chr4 14178914 14179014 -188149333 - L2 LINE L2 -5 3308 3202 3867 123 2 6 chr4 14181412 14181955 -188146392 + L1PA16 LINE L1 5617 6157 -9 1736 155 16 47 chr4 14181990 14182312 -188146035 - AluJb SINE Alu 0 312 1 794 335 88 29 chr4 14182604 14183022 -188145325 - LTR16B LTR ERVL -21 443 1 479 252 48 1 chr4 14183022 14183156 -188145191 - MIR SINE MIR -68 140 2 2243 155 40 28 chr4 14183213 14183759 -188144588 + MLT2A2 LTR ERVL 1 554 0 289 208 49 132 chr4 14183979 14184123 -188144224 + L2 LINE L2 3182 3313 0 678 296 63 67 chr4 14184635 14185146 -188143201 - L2 LINE L2 0 3272 2767 2544 48 0 6 chr4 14185146 14185458 -188142889 - AluY SINE Alu -1 310 1 678 296 63 67 chr4 14185458 14185522 -188142825 - L2 LINE L2 -505 2767 2704 351 222 19 56 chr4 14185838 14185946 -188142401 + MIR3 SINE MIR 88 191 -17 554 241 48 0 chr4 14186326 14186471 -188141876 - MIR SINE MIR -25 237 86 326 240 173 39 chr4 14186505 14186712 -188141635 + MIR SINE MIR 15 256 -6 258 32 0 0 chr4 14187197 14187206 -188141141 + (CA)n Simple_repeat Simple_repeat 1 40 0 258 32 0 0 chr4 14187206 14187237 -188141110 + (CA)n Simple_repeat Simple_repeat 2 32 0 641 178 134 45 chr4 14187483 14187685 -188140662 - MER20B DNA MER1_type -27 756 537 815 226 35 80 chr4 14187701 14188057 -188140290 - MLT1H LTR MaLR -212 336 33 805 289 31 0 chr4 14188119 14188347 -188140000 - MIR SINE MIR -13 249 15 1085 161 0 0 chr4 14188915 14189083 -188139264 - AluJb SINE Alu -11 301 134 3026 280 84 31 chr4 14189374 14190864 -188137483 - L2 LINE L2 0 3313 1740 372 158 158 0 chr4 14190865 14190947 -188137400 + AluSg/x SINE Alu 206 300 0 1067 113 54 48 chr4 14190954 14191140 -188137207 - THE1B LTR MaLR 0 364 178 886 54 16 0 chr4 14191141 14191270 -188137077 + (TTTC)n Simple_repeat Simple_repeat 2 132 0 29678 122 22 60 chr4 14191270 14191647 -188136700 - L1PA8 LINE L1 -23 6149 5759 2397 88 0 0 chr4 14191647 14191942 -188136405 - AluY SINE Alu -16 295 1 29678 122 22 60 chr4 14191942 14197959 -188130388 - L1PA8 LINE L1 -413 5759 12 22 0 0 0 chr4 14197967 14197989 -188130358 + AT_rich Low_complexity Low_complexity 1 22 0 1259 55 103 0 chr4 14197993 14198158 -188130189 - THE1B LTR MaLR -182 182 1 2259 267 111 28 chr4 14198198 14199119 -188129228 - L2 LINE L2 -1639 1675 679 263 372 39 17 chr4 14200654 14200834 -188127513 + MIR SINE MIR 47 230 -32 210 231 0 19 chr4 14200883 14200935 -188127412 - MIR SINE MIR -112 150 100 288 0 0 0 chr4 14201530 14201562 -188126785 + (CA)n Simple_repeat Simple_repeat 2 33 0 525 285 70 30 chr4 14202223 14202423 -188125924 + MIR SINE MIR 30 237 -25 372 248 186 14 chr4 14202428 14202712 -188125635 - LTR50 LTR ERVL -4 682 348 2033 230 18 67 chr4 14203031 14203601 -188124746 + MER44D DNA MER2_type 1 597 -8 1007 114 6 0 chr4 14203932 14204098 -188124249 + (TCCA)n Simple_repeat Simple_repeat 3 169 0 219 364 76 61 chr4 14204136 14204334 -188124013 - L2 LINE L2 0 3272 3072 543 332 35 0 chr4 14204417 14204619 -188123728 + MIR SINE MIR 49 257 -5 189 283 100 76 chr4 14204662 14204838 -188123509 - MIR3 SINE MIR -68 140 10 212 366 73 66 chr4 14205457 14205774 -188122573 - L2 LINE L2 -27 3245 2927 663 259 52 15 chr4 14205820 14206106 -188122241 - L1ME LINE L1 -651 5511 5215 207 253 24 12 chr4 14206129 14206212 -188122135 + (TA)n Simple_repeat Simple_repeat 2 85 0 315 330 33 33 chr4 14206251 14206466 -188121881 - L1ME LINE L1 -1045 5101 4887 6827 172 8 2 chr4 14206532 14208822 -188119525 - L1PB1 LINE L1 -2 6865 4560 11439 138 55 10 chr4 14208835 14210928 -188117419 - L1PB1 LINE L1 -3543 3319 1130 280 307 114 0 chr4 14210957 14211071 -188117276 + MIR SINE MIR 96 222 -40 203 310 17 17 chr4 14211941 14211999 -188116348 - L2 LINE L2 -52 3220 3163 245 343 0 0 chr4 14212131 14212204 -188116143 + L2 LINE L2 3227 3299 -14 271 371 103 0 chr4 14212318 14212531 -188115816 - MIR SINE MIR -6 256 22 297 0 0 0 chr4 14212786 14212819 -188115528 + (T)n Simple_repeat Simple_repeat 1 33 0 8406 29 0 197 chr4 14212819 14214276 -188114071 - SVA Other Other -216 1170 1 180 0 0 0 chr4 14214276 14214296 -188114051 + (GGGAGA)n Simple_repeat Simple_repeat 2 21 0 284 298 102 42 chr4 14215144 14215344 -188113003 + MIR SINE MIR 3 212 -50 191 319 112 47 chr4 14215860 14216092 -188112255 + L2 LINE L2 2814 3060 -212 253 259 0 0 chr4 14217112 14217166 -188111181 + GA-rich Low_complexity Low_complexity 4 57 0 326 352 0 0 chr4 14217688 14217793 -188110554 + MIR SINE MIR 48 152 -110 * 589 329 66 25 chr4 14217787 14218030 -188110317 + L2 LINE L2 2907 3159 -113 593 64 28 18 chr4 14220034 14220143 -188108204 + (TCTA)n Simple_repeat Simple_repeat 1 110 0 732 262 80 0 chr4 14220397 14220634 -188107713 + MIR SINE MIR 5 260 -2 848 236 27 106 chr4 14221065 14221395 -188106952 + L1MC5 LINE L1 6611 6914 -1047 * 13567 194 20 15 chr4 14221393 14221663 -188106684 - L1PB1 LINE L1 -88 6779 6512 231 114 0 0 chr4 14221663 14221698 -188106649 + (TG)n Simple_repeat Simple_repeat 2 36 0 13567 194 20 15 chr4 14221698 14221995 -188106352 - L1PB1 LINE L1 -355 6512 6218 207 0 0 0 chr4 14221995 14222018 -188106329 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 13567 194 20 15 chr4 14222018 14225121 -188103226 - L1PB1 LINE L1 -649 6218 3057 2243 87 7 13 chr4 14225121 14225419 -188102928 - AluY SINE Alu -15 296 1 13567 194 20 15 chr4 14225419 14226804 -188101543 - L1PB1 LINE L1 -3810 3057 1680 1437 114 17 8 chr4 14226833 14227070 -188101277 + Tigger5 DNA MER2_type 2085 2323 0 643 222 21 39 chr4 14227217 14227451 -188100896 + L1MC5 LINE L1 7305 7534 -427 2792 88 3 3 chr4 14227513 14227877 -188100470 - THE1B LTR MaLR 0 364 1 9245 122 36 39 chr4 14227882 14229460 -188098887 - THE1B-int LTR MaLR -6 1574 1 2390 148 0 0 chr4 14229460 14229824 -188098523 - THE1B LTR MaLR 0 364 1 552 266 56 22 chr4 14229834 14230101 -188098246 + L1MC5 LINE L1 7660 7935 -26 2507 96 3 25 chr4 14230801 14231164 -188097183 - THE1A LTR MaLR 0 355 1 11566 103 1 5 chr4 14231164 14232751 -188095596 - THE1A-int LTR MaLR 0 1580 1 2709 72 17 0 chr4 14232751 14233100 -188095247 - THE1A LTR MaLR 0 355 1 368 279 19 0 chr4 14233100 14233204 -188095143 + MER81 DNA DNA 5 110 -4 295 302 56 40 chr4 14234415 14234541 -188093806 + MIR SINE MIR 20 147 -115 216 0 0 0 chr4 14234693 14234717 -188093630 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 230 333 10 10 chr4 14234957 14235056 -188093291 + MIR SINE MIR 134 232 -30 501 214 55 75 chr4 14235660 14235865 -188092482 - MIR SINE MIR 0 262 66 963 225 9 18 chr4 14235922 14236140 -188092207 - MER20 DNA MER1_type -1 218 3 2198 113 0 3 chr4 14236868 14237161 -188091186 + AluSc SINE Alu 1 292 -17 393 314 195 5 chr4 14237285 14237495 -188090852 - MIR SINE MIR -7 255 6 1963 177 56 22 chr4 14237747 14238194 -188090153 - MLT1C LTR MaLR 0 467 6 237 267 33 0 chr4 14238605 14238665 -188089682 + CT-rich Low_complexity Low_complexity 3 64 0 271 319 59 15 chr4 14239122 14239257 -188089090 - MIR SINE MIR -6 256 116 2450 82 0 3 chr4 14239277 14239581 -188088766 - AluY SINE Alu -8 303 1 28 0 0 0 chr4 14239654 14239682 -188088665 + AT_rich Low_complexity Low_complexity 1 28 0 1748 174 59 0 chr4 14239712 14239999 -188088348 - AluJo SINE Alu -8 304 1 959 224 36 46 chr4 14240001 14241462 -188086885 - L1M4 LINE L1 -1906 4240 2644 663 233 107 68 chr4 14241462 14241771 -188086576 - MER57A LTR ERV1 0 403 83 1183 213 27 30 chr4 14241852 14242219 -188086128 - L1M4 LINE L1 -3527 2619 2254 * 3457 254 62 37 chr4 14242212 14243823 -188084524 - L1MEc LINE L1 -2225 3990 2339 1485 268 68 44 chr4 14243854 14244901 -188083446 - L1MEc LINE L1 -4453 1943 872 283 196 137 29 chr4 14244966 14245068 -188083279 - MLT1J LTR MaLR 0 511 399 233 265 24 36 chr4 14245289 14245372 -188082975 - MLT1L LTR MaLR -388 227 146 356 240 13 0 chr4 14245831 14245906 -188082441 + MIR SINE MIR 79 154 -108 1876 191 84 14 chr4 14246050 14246538 -188081809 - Charlie1b DNA MER1_type 0 523 2 509 244 154 0 chr4 14246553 14246709 -188081638 + MIR SINE MIR 65 244 -18 418 243 66 28 chr4 14246936 14247093 -188081254 - MIR SINE MIR -62 146 26 511 332 76 13 chr4 14247710 14247948 -188080399 - MIR SINE MIR -8 254 2 27 29 0 0 chr4 14248374 14248408 -188079939 + AT_rich Low_complexity Low_complexity 1 34 0 476 242 157 33 chr4 14248794 14248947 -188079400 - MIR SINE MIR -70 192 21 559 184 8 19 chr4 14249992 14250254 -188078093 + GA-rich Low_complexity Low_complexity 1 259 0 34571 38 101 3 chr4 14251112 14256711 -188071636 + L1PA3 LINE L1 1 6168 0 1884 134 0 0 chr4 14257082 14257367 -188070980 - AluSc SINE Alu 0 304 20 610 269 12 23 chr4 14257554 14257725 -188070622 - MER5A DNA MER1_type 0 189 21 299 283 18 71 chr4 14257846 14257959 -188070388 - MIR SINE MIR -4 258 152 454 239 119 15 chr4 14258003 14258137 -188070210 - MIR SINE MIR -94 168 21 1009 176 11 0 chr4 14258244 14258420 -188069927 - MER58A DNA MER1_type 0 224 47 272 254 138 51 chr4 14258677 14258815 -188069532 + L2 LINE L2 2637 2786 -528 199 339 32 113 chr4 14259668 14259916 -188068431 + L2 LINE L2 3014 3241 -31 440 107 39 0 chr4 14259922 14260025 -188068322 + (TA)n Simple_repeat Simple_repeat 1 107 0 316 224 71 0 chr4 14260025 14260110 -188068237 + L1MC4 LINE L1 6613 6703 -1339 284 352 9 0 chr4 14260744 14260849 -188067498 + MIR3 SINE MIR 74 179 -29 253 293 88 75 chr4 14261119 14261177 -188067170 - MIR SINE MIR -32 230 174 2064 128 7 3 chr4 14261177 14261475 -188066872 - AluSq SINE Alu -12 301 3 253 293 88 75 chr4 14261475 14261630 -188066717 - MIR SINE MIR -88 174 12 296 218 7 20 chr4 14262527 14262674 -188065673 + GA-rich Low_complexity Low_complexity 2 146 0 239 420 9 9 chr4 14262684 14262796 -188065551 + MIR SINE MIR 37 148 -60 1880 338 79 30 chr4 14262963 14264245 -188064102 + L2 LINE L2 1525 2869 -445 2613 127 8 42 chr4 14264361 14264832 -188063515 + MER41B LTR ERV1 1 455 -180 422 207 40 6 chr4 14264839 14265013 -188063334 + (TA)n Simple_repeat Simple_repeat 1 180 0 636 86 16 54 chr4 14265039 14265225 -188063122 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 241 79 95 0 chr4 14265225 14265288 -188063059 + (TA)n Simple_repeat Simple_repeat 1 69 0 319 159 63 0 chr4 14265288 14265351 -188062996 + MER41A LTR ERV1 488 554 0 457 306 8 0 chr4 14265471 14265592 -188062755 - MIR3 SINE MIR -14 194 73 253 247 0 118 chr4 14265967 14266052 -188062295 + MIR SINE MIR 110 184 -78 236 328 62 31 chr4 14266257 14266385 -188061962 + L2 LINE L2 3115 3246 -67 310 269 58 10 chr4 14266442 14266546 -188061801 - L2 LINE L2 -36 3277 3169 385 264 0 11 chr4 14266551 14266642 -188061705 + MIR SINE MIR 64 153 -109 397 138 21 0 chr4 14266705 14266799 -188061548 + (TA)n Simple_repeat Simple_repeat 1 96 0 1711 164 17 14 chr4 14266826 14267113 -188061234 - AluJb SINE Alu -24 288 1 1535 229 30 39 chr4 14267113 14267157 -188061190 + LTR40a LTR ERVL 87 130 -389 1419 119 50 5 chr4 14267157 14267376 -188060971 + MER30 DNA MER1_type 1 229 -1 1535 229 30 39 chr4 14267376 14267763 -188060584 + LTR40a LTR ERVL 130 514 -5 32 43 0 0 chr4 14267763 14267809 -188060538 + AT_rich Low_complexity Low_complexity 1 46 0 2015 178 46 17 chr4 14267828 14268239 -188060108 - L1PB4 LINE L1 -12 6144 5722 272 160 20 0 chr4 14268257 14268307 -188060040 + MIR SINE MIR 141 191 -71 274 352 29 0 chr4 14268391 14268496 -188059851 + L2 LINE L2 2978 3085 -228 1267 246 8 45 chr4 14268496 14268894 -188059453 - MLT2C1 LTR ERVL -2 395 13 314 292 66 7 chr4 14268920 14269057 -188059290 + L2 LINE L2 3100 3244 -69 442 342 58 67 chr4 14269464 14269806 -188058541 + L2 LINE L2 2920 3258 -14 510 262 16 55 chr4 14269871 14270054 -188058293 - MER5B DNA MER1_type 0 178 3 574 260 151 9 chr4 14270482 14270701 -188057646 + MIR SINE MIR 10 259 -3 241 250 33 0 chr4 14270765 14270825 -188057522 + L2 LINE L2 2598 2659 -655 581 278 109 34 chr4 14271254 14271639 -188056708 - MLT1J2 LTR MaLR -36 414 1 668 202 45 20 chr4 14272100 14272298 -188056049 + MLT1C LTR MaLR 34 236 -231 * 753 215 37 11 chr4 14272290 14272477 -188055870 + MLT1C LTR MaLR 187 493 -90 299 267 0 0 chr4 14272547 14272607 -188055740 + MER91 DNA MER1_type 128 187 -3 206 69 0 0 chr4 14272901 14272930 -188055417 - L2 LINE L2 -218 3054 3026 1991 219 72 12 chr4 14273058 14273560 -188054787 + MER74A LTR ERVL 3 534 -24 195 129 0 0 chr4 14274386 14274417 -188053930 + (TTC)n Simple_repeat Simple_repeat 2 32 0 353 298 26 18 chr4 14274774 14274888 -188053459 - L2 LINE L2 0 3313 3199 403 306 144 0 chr4 14274979 14275152 -188053195 + MIR SINE MIR 64 261 -1 338 302 156 26 chr4 14275506 14275698 -188052649 + MIR SINE MIR 11 227 -35 239 329 73 15 chr4 14275765 14275902 -188052445 + MIR SINE MIR 15 144 -64 315 338 82 68 chr4 14276047 14276266 -188052081 + L2 LINE L2 2720 2941 -373 2458 121 11 11 chr4 14276340 14276695 -188051652 + THE1A LTR MaLR 1 355 0 12323 101 5 1 chr4 14276695 14278268 -188050079 + THE1A-int LTR MaLR 1 1580 0 2600 99 8 8 chr4 14278270 14278623 -188049724 + THE1A LTR MaLR 3 355 0 441 271 36 88 chr4 14278670 14278921 -188049426 + L2 LINE L2 3075 3312 -1 2331 101 0 25 chr4 14279190 14279506 -188048841 - AluSx SINE Alu -4 308 1 23 0 0 0 chr4 14279705 14279728 -188048619 + AT_rich Low_complexity Low_complexity 1 23 0 341 212 186 0 chr4 14280715 14280828 -188047519 + MIR SINE MIR 107 240 -22 681 261 0 96 chr4 14281199 14281459 -188046888 - MIR SINE MIR 0 262 28 1136 268 87 22 chr4 14281566 14281936 -188046411 + MSTD LTR MaLR 3 396 0 380 278 7 42 chr4 14282267 14282411 -188045936 - L2 LINE L2 -190 3082 2944 253 139 0 0 chr4 14283231 14283274 -188045073 + MIR SINE MIR 118 160 -102 704 302 104 53 chr4 14283282 14284186 -188044161 + L2 LINE L2 2299 3256 -57 524 192 218 6 chr4 14284186 14284342 -188044005 - MER53 DNA DNA 0 189 1 704 302 104 53 chr4 14284342 14284402 -188043945 + L2 LINE L2 3256 3312 -1 727 274 66 72 chr4 14284662 14285104 -188043243 - MLT1J LTR MaLR -68 443 5 327 322 203 28 chr4 14285491 14285845 -188042502 + L3 LINE CR1 746 1161 -416 337 299 185 0 chr4 14285856 14286013 -188042334 + L3 LINE CR1 637 822 -755 652 181 29 0 chr4 14286013 14286151 -188042196 + L1MA8 LINE L1 6146 6287 -4 1118 277 117 13 chr4 14287294 14287764 -188040583 - LTR33 LTR ERVL 0 521 3 214 250 88 0 chr4 14287883 14287951 -188040396 + L2 LINE L2 3193 3266 -6 195 42 0 0 chr4 14287955 14287979 -188040368 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 239 301 121 36 chr4 14288348 14288514 -188039833 - L2 LINE L2 -9 3304 3125 215 324 83 50 chr4 14288548 14288826 -188039521 - L2 LINE L2 -159 3113 2827 565 203 61 25 chr4 14288879 14289039 -188039308 + MER96B DNA MER1_type? 11 177 -240 5126 175 18 7 chr4 14289039 14289919 -188038428 - MER54A LTR ERVL -3 898 9 395 192 0 14 chr4 14289948 14290021 -188038326 + MER96B DNA MER1_type? 182 253 -164 1434 230 7 0 chr4 14290041 14290350 -188037997 + L1M4 LINE L1 4899 5209 -937 194 319 138 35 chr4 14290350 14290582 -188037765 + L2 LINE L2 2722 2977 -337 1622 215 24 110 chr4 14290688 14290757 -188037590 - MLT1D LTR MaLR 0 505 432 1252 173 138 35 chr4 14290757 14291017 -188037330 + AluJo SINE Alu 2 288 -14 1622 215 24 110 chr4 14291017 14291500 -188036847 - MLT1D LTR MaLR -73 432 1 438 226 57 32 chr4 14291691 14291815 -188036532 - L2 LINE L2 -1 3312 3186 208 176 0 0 chr4 14291812 14291846 -188036501 - MER5B DNA MER1_type -41 137 104 * 429 258 306 0 chr4 14291971 14292200 -188036147 - MER5C DNA MER1_type 0 324 26 320 325 3 32 chr4 14293009 14293122 -188035225 + MIR SINE MIR 4 114 -94 2312 166 0 14 chr4 14293754 14294122 -188034225 + L1PA15 LINE L1 5803 6165 0 1551 175 38 0 chr4 14294122 14294413 -188033934 + MER65A LTR ERV1 128 429 -16 1782 165 88 20 chr4 14294755 14295106 -188033241 + THE1C LTR MaLR 1 375 0 2223 137 159 2 chr4 14295106 14295514 -188032833 + THE1C-int LTR MaLR 1 472 -1108 409 182 0 0 chr4 14295518 14295584 -188032763 + MSTA LTR MaLR 363 428 0 416 249 40 57 chr4 14295590 14295767 -188032580 - MER104 DNA Tc2 0 180 7 685 159 7 7 chr4 14296184 14296329 -188032018 + CT-rich Low_complexity Low_complexity 2 146 0 463 226 39 0 chr4 14298652 14298754 -188029593 - MIR SINE MIR -99 163 58 289 332 27 62 chr4 14298765 14299021 -188029326 + L2 LINE L2 2558 2804 -510 242 388 42 18 chr4 14299099 14299264 -188029083 + L2 LINE L2 2915 3083 -189 237 285 167 42 chr4 14299543 14299687 -188028660 - MER5A DNA MER1_type -16 171 1 1560 191 42 42 chr4 14299761 14300170 -188028177 - L1MA8 LINE L1 -2 6289 5881 2484 129 91 5 chr4 14300844 14301238 -188027109 + MSTA LTR MaLR 1 428 0 205 250 0 38 chr4 14301327 14301407 -188026940 + (TTA)n Simple_repeat Simple_repeat 2 78 0 4343 150 67 21 chr4 14301548 14302295 -188026052 + LTR39 LTR ERV1 3 783 0 414 277 39 30 chr4 14302608 14302801 -188025546 - MIR SINE MIR -62 200 4 900 194 51 0 chr4 14304791 14304966 -188023381 + MER5A DNA MER1_type 6 189 0 234 246 18 0 chr4 14305090 14305147 -188023200 - MIR SINE MIR -113 149 92 191 219 141 0 chr4 14305484 14305548 -188022799 + MIR SINE MIR 96 168 -94 709 293 40 87 chr4 14305847 14306297 -188022050 - MLT1J1 LTR MaLR 0 446 18 841 35 9 9 chr4 14306912 14307026 -188021321 + (TCTA)n Simple_repeat Simple_repeat 2 115 0 1075 194 144 90 chr4 14307207 14307496 -188020851 + MLT1A1 LTR MaLR 1 314 -51 2352 68 0 0 chr4 14307496 14307820 -188020527 - AluY SINE Alu 0 324 1 1075 194 144 90 chr4 14307820 14307875 -188020472 + MLT1A1 LTR MaLR 314 365 0 3956 188 49 23 chr4 14307875 14308656 -188019691 + MLT1A1-int LTR MaLR 1 801 -934 203 289 119 69 chr4 14308762 14308921 -188019426 + MIR SINE MIR 20 186 -76 2440 105 3 6 chr4 14309147 14309479 -188018868 - L1PA8A LINE L1 -4 6127 5797 211 360 20 10 chr4 14309520 14309620 -188018727 - L3 LINE CR1 -47 1530 1430 242 316 51 0 chr4 14310264 14310343 -188018004 - L2 LINE L2 -49 3223 3141 379 286 157 44 chr4 14311163 14311411 -188016936 - L3 LINE CR1 -177 1400 1125 277 209 93 35 chr4 14311705 14311791 -188016556 + L2 LINE L2 3223 3313 0 374 310 71 0 chr4 14312110 14312223 -188016124 + MER63A DNA MER1_type 90 210 0 554 298 63 21 chr4 14312358 14312549 -188015798 + MER20B DNA MER1_type 2 200 -19 291 306 0 0 chr4 14313468 14313553 -188014794 - L1MC4a LINE L1 -1897 5911 5827 1322 277 115 29 chr4 14313566 14314244 -188014103 - L1ME2 LINE L1 -1 6163 5463 297 0 0 0 chr4 14314015 14314048 -188014299 + (CA)n Simple_repeat Simple_repeat 2 34 0 554 277 69 84 chr4 14314048 14314280 -188014067 - L1MB4 LINE L1 -507 5673 5451 2601 121 5 27 chr4 14314280 14314652 -188013695 - THE1B LTR MaLR 0 364 1 554 277 69 84 chr4 14314652 14314687 -188013660 - L1MB4 LINE L1 -729 5451 5417 420 262 112 52 chr4 14314664 14315123 -188013224 - L1MEd LINE L1 -4747 1514 991 * 478 66 0 0 chr4 14315152 14315213 -188013134 - L1PB4 LINE L1 -11 6145 6085 860 142 14 0 chr4 14315213 14315361 -188012986 + L1 LINE L1 5159 5308 -838 501 306 149 23 chr4 14315363 14315758 -188012589 - L1MEd LINE L1 -5096 974 530 835 92 503 0 chr4 14315860 14316013 -188012334 - MER30 DNA MER1_type 0 230 1 430 77 0 31 chr4 14316554 14316619 -188011728 - L1MC1 LINE L1 -5 6328 6266 4258 150 19 3 chr4 14316627 14317300 -188011047 - L1MC1 LINE L1 -20 6313 5630 234 62 0 0 chr4 14317430 14317462 -188010885 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 276 252 47 28 chr4 14317494 14317601 -188010746 - L1MC/D LINE L1 -2075 5733 5625 278 228 190 0 chr4 14317602 14317681 -188010666 - MLT1J2 LTR MaLR -290 160 67 218 355 0 0 chr4 14318108 14318170 -188010177 + MIR SINE MIR 63 124 -138 629 306 52 4 chr4 14318770 14319002 -188009345 + MIR SINE MIR 15 257 -5 493 222 56 24 chr4 14319087 14319213 -188009134 - MIR SINE MIR -94 168 39 521 301 150 9 chr4 14319381 14319594 -188008753 + MIR SINE MIR 16 258 -4 236 299 144 30 chr4 14319594 14319645 -188008702 + MLT1H LTR MaLR 1 45 -504 1743 163 3 16 chr4 14319645 14319958 -188008389 - AluJo SINE Alu -3 309 1 236 299 144 30 chr4 14319958 14320073 -188008274 + MLT1H LTR MaLR 45 186 -363 978 277 71 71 chr4 14320685 14321162 -188007185 + MER21B LTR ERV1 238 714 -149 233 73 0 24 chr4 14322052 14322093 -188006254 + (TG)n Simple_repeat Simple_repeat 2 41 0 1838 183 10 75 chr4 14322205 14322605 -188005742 - MLT1A2 LTR MaLR 0 374 1 21 0 0 0 chr4 14322962 14322983 -188005364 + AT_rich Low_complexity Low_complexity 1 21 0 711 236 179 5 chr4 14323388 14323600 -188004747 - MIR SINE MIR -2 260 12 180 281 115 43 chr4 14323626 14323765 -188004582 - MIR SINE MIR -53 209 61 865 185 47 47 chr4 14324559 14324791 -188003556 - MIR SINE MIR -26 236 5 21 0 0 0 chr4 14325769 14325790 -188002557 + AT_rich Low_complexity Low_complexity 1 21 0 186 205 0 0 chr4 14325882 14325921 -188002426 + L2 LINE L2 3270 3308 -5 539 273 100 45 chr4 14325948 14326168 -188002179 + MIR SINE MIR 26 257 -5 2366 79 0 10 chr4 14326178 14326481 -188001866 + AluY SINE Alu 1 300 -11 210 286 97 45 chr4 14326942 14327096 -188001251 + L2 LINE L2 2485 2646 -668 530 287 86 24 chr4 14327157 14327366 -188000981 + MIR SINE MIR 13 234 -28 197 243 14 0 chr4 14327393 14327463 -188000884 + (CACCAT)n Simple_repeat Simple_repeat 4 74 0 24 0 0 0 chr4 14327689 14327713 -188000634 + AT_rich Low_complexity Low_complexity 1 24 0 399 259 140 31 chr4 14327990 14328183 -188000164 + L3 LINE CR1 1353 1566 -11 746 136 0 42 chr4 14328683 14328801 -187999546 - AluJo SINE Alu -113 199 87 737 178 5 129 chr4 14328804 14329006 -187999341 - MER3 DNA MER1_type -79 130 1 865 225 6 11 chr4 14329503 14329681 -187998666 + MER3 DNA MER1_type 1 130 -79 298 363 6 35 chr4 14330296 14330467 -187997880 - MIR SINE MIR -71 191 26 293 350 0 10 chr4 14330487 14330590 -187997757 + MIR3 SINE MIR 1 102 -106 512 270 0 0 chr4 14330629 14330729 -187997618 + MER81 DNA DNA 15 114 0 429 280 20 13 chr4 14331176 14331326 -187997021 + LTR67 LTR ERVL 397 547 -10 183 314 0 0 chr4 14332581 14332632 -187995715 - L2 LINE L2 -4 3309 3259 * 272 241 170 27 chr4 14332599 14332711 -187995636 - MIR SINE MIR -16 246 119 1995 197 73 11 chr4 14333100 14333537 -187994810 + MLT1C LTR MaLR 4 467 0 234 0 0 0 chr4 14333610 14333636 -187994711 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 293 313 100 31 chr4 14333883 14334034 -187994313 + L2 LINE L2 3026 3204 -109 1133 203 28 0 chr4 14334034 14334246 -187994101 - MER20 DNA MER1_type -1 218 1 293 313 100 31 chr4 14334246 14334353 -187993994 + L2 LINE L2 3204 3302 -11 197 368 13 46 chr4 14334400 14334552 -187993795 - L2 LINE L2 -182 3090 2944 21 0 0 0 chr4 14334915 14334936 -187993411 + AT_rich Low_complexity Low_complexity 1 21 0 309 288 26 26 chr4 14335260 14335368 -187992979 + MIR SINE MIR 2 106 -106 877 276 73 51 chr4 14335401 14335687 -187992660 - MLT1G1 LTR MaLR -20 575 276 4582 107 22 14 chr4 14335687 14336316 -187992031 - MER51A LTR ERV1 0 634 1 877 276 73 51 chr4 14336316 14336439 -187991908 - MLT1G1 LTR MaLR -319 276 157 824 177 44 6 chr4 14336494 14336652 -187991695 - AluJo SINE Alu -20 292 129 787 176 0 8 chr4 14336962 14337081 -187991266 - AluJo SINE Alu -193 119 2 585 263 38 0 chr4 14337149 14337309 -187991038 - MLT1G1 LTR MaLR -427 168 3 522 309 51 90 chr4 14337480 14338068 -187990279 + L2 LINE L2 2420 3004 -268 401 284 44 30 chr4 14338094 14338343 -187990004 - MLT1L LTR MaLR -9 606 335 2651 149 30 62 chr4 14338741 14339238 -187989109 - L1MB3 LINE L1 -12 6171 5691 299 284 71 31 chr4 14339290 14339417 -187988930 + L2 LINE L2 3140 3271 -1 2654 208 49 70 chr4 14339913 14340720 -187987627 - L1MC5 LINE L1 -26 7935 7149 1958 118 21 7 chr4 14340720 14341009 -187987338 - AluSp SINE Alu -17 296 4 2654 208 49 70 chr4 14341009 14341144 -187987203 - L1MC5 LINE L1 -812 7149 7013 264 154 13 39 chr4 14341190 14341268 -187987079 + CT-rich Low_complexity Low_complexity 4 79 0 292 301 32 0 chr4 14341999 14342092 -187986255 - L1MC5 LINE L1 -826 7135 7040 189 328 30 0 chr4 14343030 14343097 -187985250 - L2 LINE L2 -15 3257 3189 325 213 250 0 chr4 14343396 14343504 -187984843 + L2 LINE L2 3138 3272 0 270 0 0 0 chr4 14344749 14344779 -187983568 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 366 23 0 0 chr4 14344778 14344821 -187983526 + (GA)n Simple_repeat Simple_repeat 1 43 0 866 236 10 15 chr4 14345127 14345322 -187983025 - MLT1A1 LTR MaLR -14 351 158 2153 133 41 32 chr4 14345623 14345992 -187982355 + THE1C LTR MaLR 4 375 0 4658 194 40 34 chr4 14346430 14348306 -187980041 - L1MC2 LINE L1 -121 6223 4332 245 322 87 34 chr4 14348394 14348543 -187979804 - L3 LINE CR1 -54 1523 1367 415 258 121 8 chr4 14348744 14348876 -187979471 + MIR SINE MIR 37 183 -79 522 291 44 33 chr4 14349086 14349268 -187979079 - MIR3 SINE MIR -16 192 9 1332 286 60 40 chr4 14349976 14350273 -187978074 + MLT1L LTR MaLR 1 291 -324 1977 202 52 39 chr4 14350273 14350734 -187977613 + MLT1C LTR MaLR 1 467 0 1332 286 60 40 chr4 14350734 14351033 -187977314 + MLT1L LTR MaLR 291 609 -6 330 217 43 11 chr4 14351037 14351129 -187977218 + MIR SINE MIR 97 191 -71 510 17 0 0 chr4 14351971 14352030 -187976317 + (CA)n Simple_repeat Simple_repeat 2 60 0 233 200 20 20 chr4 14352067 14352117 -187976230 - L2 LINE L2 -86 3186 3137 2317 162 55 0 chr4 14352174 14352556 -187975791 + MER57A LTR ERV1 1 403 0 199 296 61 10 chr4 14353759 14353857 -187974490 - MIR3 SINE MIR -42 166 64 399 305 19 76 chr4 14353977 14354187 -187974160 + MIR SINE MIR 37 234 -28 228 392 53 12 chr4 14355057 14355228 -187973119 + L2 LINE L2 2869 3046 -226 351 273 40 0 chr4 14355392 14355491 -187972856 + MIR SINE MIR 2 104 -158 229 286 0 29 chr4 14355538 14355608 -187972739 + L2 LINE L2 3205 3272 0 201 152 0 0 chr4 14355648 14355681 -187972666 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 222 260 0 65 chr4 14356561 14356638 -187971709 - L2 LINE L2 -5 3267 3196 236 310 0 60 chr4 14356739 14356839 -187971508 - MIR SINE MIR -112 150 57 344 338 76 31 chr4 14357221 14357644 -187970703 - L1ME4a LINE L1 -64 6057 5616 194 0 0 37 chr4 14357688 14357715 -187970632 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 196 188 21 21 chr4 14357884 14357932 -187970415 - MIR3 SINE MIR -8 200 153 8087 29 0 0 chr4 14358416 14360087 -187968260 - L1PA3 LINE L1 -50 6105 4435 282 305 94 54 chr4 14360507 14360858 -187967489 - L2 LINE L2 -568 2746 2382 237 293 0 0 chr4 14360978 14361036 -187967311 - L2 LINE L2 -8 3264 3207 359 347 13 13 chr4 14361171 14361321 -187967026 - L2 LINE L2 -5 3308 3159 857 280 72 13 chr4 14361388 14361763 -187966584 - LTR16B LTR ERVL -67 397 1 537 323 139 19 chr4 14361822 14362169 -187966178 - L2 LINE L2 -256 3057 2677 282 307 0 0 chr4 14363125 14363226 -187965121 + Charlie8 DNA MER1_type 72 172 -2245 216 0 0 0 chr4 14363263 14363287 -187965060 + (T)n Simple_repeat Simple_repeat 1 24 0 275 343 53 30 chr4 14363420 14363589 -187964758 + L2 LINE L2 2687 2859 -455 352 314 0 48 chr4 14364157 14364281 -187964066 + MIR SINE MIR 19 136 -72 198 0 0 0 chr4 14365186 14365208 -187963139 + (T)n Simple_repeat Simple_repeat 1 22 0 714 264 169 34 chr4 14365214 14365563 -187962784 + MLT1C LTR MaLR 72 467 0 357 308 171 21 chr4 14365584 14365818 -187962529 - MER102b DNA MER1_type 0 341 73 2733 111 8 3 chr4 14365889 14366251 -187962096 - THE1B LTR MaLR 0 364 1 3773 155 34 26 chr4 14366592 14367295 -187961052 - LTR1 LTR ERV1 0 785 77 611 98 0 0 chr4 14367623 14367705 -187960642 + L1PA10 LINE L1 6027 6108 -60 249 159 16 32 chr4 14367705 14367768 -187960579 - LTR1 LTR ERV1 -722 63 2 34 24 0 0 chr4 14368553 14368594 -187959753 + AT_rich Low_complexity Low_complexity 1 41 0 257 294 28 28 chr4 14368769 14368912 -187959435 - L1MC/D LINE L1 -1906 5902 5760 1040 113 7 0 chr4 14369648 14369789 -187958558 + L1PA10 LINE L1 6027 6168 0 21 0 0 0 chr4 14370348 14370369 -187957978 + AT_rich Low_complexity Low_complexity 1 21 0 1617 185 3 102 chr4 14370578 14370913 -187957434 - AluJb SINE Alu 0 302 1 335 336 83 23 chr4 14371803 14372020 -187956327 - MIR SINE MIR -13 249 20 1020 268 160 11 chr4 14372611 14373165 -187955182 - L2 LINE L2 -2 3311 2685 2867 164 64 29 chr4 14373208 14373251 -187955096 - MER21A LTR ERV1 0 931 891 189 0 0 0 chr4 14373251 14373272 -187955075 + (CCA)n Simple_repeat Simple_repeat 3 23 0 2867 164 64 29 chr4 14373272 14374025 -187954322 - MER21A LTR ERV1 -40 891 1 281 50 0 67 chr4 14374031 14374091 -187954256 + (TA)n Simple_repeat Simple_repeat 2 57 0 237 345 90 46 chr4 14374652 14374896 -187953451 - L2 LINE L2 -3 3269 3032 557 136 107 0 chr4 14375181 14375284 -187953063 + MER53 DNA DNA 1 114 -75 359 281 45 86 chr4 14376583 14376850 -187951497 - MIR SINE MIR -6 256 3 712 133 19 0 chr4 14377184 14377289 -187951058 + AluJb SINE Alu 2 108 -204 2561 127 70 70 chr4 14377332 14377850 -187950497 + LTR1 LTR ERV1 1 518 -267 544 300 83 9 chr4 14378554 14378784 -187949563 + MIR SINE MIR 16 262 0 290 335 61 24 chr4 14379642 14379806 -187948541 + MIR SINE MIR 22 191 -71 225 262 16 0 chr4 14380519 14380580 -187947767 + (CAATT)n Simple_repeat Simple_repeat 1 62 0 337 216 21 21 chr4 14380879 14380976 -187947371 + L1ME4a LINE L1 5830 5926 -195 422 310 14 21 chr4 14381531 14381676 -187946671 - MLT1H LTR MaLR -325 224 81 1094 232 146 34 chr4 14382112 14382495 -187945852 - MLT2F LTR ERVL -1 662 237 591 295 58 35 chr4 14382553 14382811 -187945536 - MLT2F LTR ERVL -396 267 4 2556 126 8 126 chr4 14383079 14383605 -187944742 - LTR24 LTR ERV1 -2 465 2 375 23 0 0 chr4 14383716 14383760 -187944587 + (TG)n Simple_repeat Simple_repeat 2 45 0 3481 169 22 45 chr4 14384798 14385532 -187942815 - L1MA10 LINE L1 -2 6332 5616 218 32 32 0 chr4 14385666 14385697 -187942650 + (CA)n Simple_repeat Simple_repeat 2 33 0 2286 102 0 16 chr4 14386771 14387085 -187941262 - AluSp SINE Alu -4 309 1 875 285 11 31 chr4 14388175 14388435 -187939912 + MIR SINE MIR 3 257 -5 926 216 95 54 chr4 14388767 14389082 -187939265 + MLT1H LTR MaLR 1 328 -221 234 274 68 41 chr4 14389304 14389377 -187938970 - L2 LINE L2 0 3272 3198 259 313 0 12 chr4 14389418 14389498 -187938849 + L2 LINE L2 3223 3301 -12 222 274 0 0 chr4 14389645 14389696 -187938651 + CT-rich Low_complexity Low_complexity 5 55 0 557 282 26 13 chr4 14390378 14390534 -187937813 + MER5B DNA MER1_type 20 177 -1 351 316 38 15 chr4 14390545 14390678 -187937669 - L2 LINE L2 -1 3271 3136 490 319 38 0 chr4 14390808 14390968 -187937379 - MIR SINE MIR -37 225 60 260 320 117 8 chr4 14391206 14391334 -187937013 - MIR3 SINE MIR -56 152 11 197 299 51 66 chr4 14391610 14391747 -187936600 - MIR SINE MIR -39 223 89 261 163 0 0 chr4 14391982 14392031 -187936316 + (TG)n Simple_repeat Simple_repeat 1 49 0 1771 249 15 36 chr4 14393598 14394075 -187934272 - MLT1C LTR MaLR 0 467 1 461 286 89 33 chr4 14394399 14394612 -187933735 - MIR SINE MIR 0 262 38 214 214 0 71 chr4 14395379 14395435 -187932912 - L2 LINE L2 0 3313 3262 31 0 0 0 chr4 14395808 14395839 -187932508 + AT_rich Low_complexity Low_complexity 1 31 0 289 0 49 0 chr4 14395851 14395892 -187932455 + (TTA)n Simple_repeat Simple_repeat 3 45 0 8133 21 0 0 chr4 14395892 14396818 -187931529 - L1PA3 LINE L1 -18 6137 5211 254 314 29 19 chr4 14396948 14397053 -187931294 - L2 LINE L2 -497 2817 2712 254 321 0 0 chr4 14397101 14397185 -187931162 - MIR SINE MIR -70 192 109 330 343 230 10 chr4 14397664 14397868 -187930479 - MIR SINE MIR -11 251 3 223 290 118 11 chr4 14397979 14398072 -187930275 - L2 LINE L2 -4 3268 3166 240 157 0 39 chr4 14398185 14398236 -187930111 - Tigger2 DNA MER2_type -386 2332 2284 250 290 0 0 chr4 14398529 14398598 -187929749 + MIR SINE MIR 109 177 -85 383 197 14 0 chr4 14398819 14398890 -187929457 - Tigger2 DNA MER2_type -2646 72 1 308 255 0 69 chr4 14398959 14399061 -187929286 - MLT1H LTR MaLR -2 547 453 390 281 0 11 chr4 14399281 14399370 -187928977 - MLT2E LTR ERVL -509 119 32 877 263 75 11 chr4 14399678 14399959 -187928388 - ERVL-E LTR ERVL -328 5436 5138 43415 35 21 1 chr4 14400018 14406050 -187922297 - L1PA2 LINE L1 0 6155 1 525 322 22 4 chr4 14406103 14406330 -187922017 - ERVL-E LTR ERVL -673 4981 4751 243 247 34 130 chr4 14406451 14406597 -187921750 + MLT1I-int LTR MaLR 1032 1163 -208 499 303 85 32 chr4 14406812 14407032 -187921315 + LTR33 LTR ERVL 60 260 -263 466 128 13 13 chr4 14407072 14407150 -187921197 - MADE1 DNA Mariner 0 80 3 350 303 48 28 chr4 14407155 14407300 -187921047 + LTR33 LTR ERVL 374 521 0 205 370 14 0 chr4 14407316 14407389 -187920958 + MIR SINE MIR 67 140 -68 336 268 37 0 chr4 14407487 14407569 -187920778 + L2 LINE L2 3186 3270 -2 905 124 0 51 chr4 14407623 14407760 -187920587 + AluJ SINE Alu 1 130 -172 322 41 0 0 chr4 14409067 14409111 -187919236 - MADE1 DNA Mariner -1 79 41 369 0 0 0 chr4 14410322 14410363 -187917984 + (T)n Simple_repeat Simple_repeat 1 41 0 489 308 127 9 chr4 14411774 14411995 -187916352 + MLT1I LTR MaLR 1 247 -162 * 759 215 193 34 chr4 14411992 14412459 -187915888 + MLT1E1 LTR MaLR 72 653 -1 289 273 149 19 chr4 14412696 14412850 -187915497 - LTR16A LTR ERVL 0 450 277 956 180 74 21 chr4 14414220 14414409 -187913938 + AluJ SINE Alu 105 303 -9 2026 118 18 0 chr4 14414418 14414697 -187913650 + AluSq SINE Alu 5 288 -25 906 226 20 15 chr4 14414974 14415169 -187913178 + MER58A DNA MER1_type 29 224 0 224 327 0 0 chr4 14415583 14415638 -187912709 - MIR SINE MIR -160 102 48 302 191 128 21 chr4 14416862 14416956 -187911391 + MIR SINE MIR 103 206 -56 297 0 0 0 chr4 14417977 14418010 -187910337 + (TG)n Simple_repeat Simple_repeat 2 34 0 326 339 71 71 chr4 14418044 14418327 -187910020 + MLT1K LTR MaLR 69 351 -237 317 244 12 37 chr4 14418405 14418487 -187909860 + MLT1K LTR MaLR 487 566 -22 192 300 42 58 chr4 14418873 14418993 -187909354 + MIR SINE MIR 89 206 -56 3558 170 15 70 chr4 14419013 14419742 -187908605 + LTR8 LTR ERV1 1 689 -2 237 174 0 0 chr4 14419943 14419989 -187908358 + LTR66 LTR ERVL 394 439 -171 242 173 77 0 chr4 14419990 14420042 -187908305 + L1MD3 LINE L1 6612 6667 -1328 275 247 47 0 chr4 14420057 14420142 -187908205 + L1MC4 LINE L1 6614 6702 -1340 244 227 0 62 chr4 14420149 14420246 -187908101 - L1MC4 LINE L1 -1339 6703 6613 217 317 55 48 chr4 14420645 14420790 -187907557 - MIR SINE MIR -46 216 71 817 225 26 62 chr4 14421667 14421894 -187906453 + MER20 DNA MER1_type 1 219 0 462 302 137 0 chr4 14422195 14422377 -187905970 + MIR SINE MIR 22 228 -34 247 273 136 0 chr4 14422491 14422579 -187905768 - MER5B DNA MER1_type -73 105 6 332 264 76 49 chr4 14422583 14422727 -187905620 - MIR3 SINE MIR -48 160 13 449 291 55 6 chr4 14422942 14423107 -187905240 - MIR SINE MIR -21 241 69 440 201 14 101 chr4 14423151 14423290 -187905057 + L2 LINE L2 3187 3313 0 2462 148 48 10 chr4 14423313 14423725 -187904622 - MSTA LTR MaLR 0 428 1 2001 111 20 17 chr4 14424026 14424324 -187904023 - AluY SINE Alu -12 299 1 2123 160 9 15 chr4 14424344 14424681 -187903666 + MER1B DNA MER1_type 1 335 -2 304 228 51 59 chr4 14425129 14425250 -187903097 - MIR SINE MIR -62 146 33 1685 230 139 19 chr4 14425288 14425357 -187902990 + MER77 LTR ERV1 55 114 -491 2189 118 3 0 chr4 14425357 14425661 -187902686 - AluSx SINE Alu -7 305 1 1685 230 139 19 chr4 14425661 14426052 -187902295 + MER77 LTR ERV1 114 570 -35 2405 175 11 30 chr4 14426163 14426598 -187901749 + MSTB1 LTR MaLR 4 430 -2 759 184 7 14 chr4 14427240 14427387 -187900960 - L1MA9 LINE L1 0 6312 6167 1512 178 40 0 chr4 14427390 14427688 -187900659 + L1MA9 LINE L1 5838 6147 -165 369 0 0 0 chr4 14427691 14427732 -187900615 + (CA)n Simple_repeat Simple_repeat 2 42 0 378 244 85 30 chr4 14427741 14427905 -187900442 - MER5B DNA MER1_type -3 175 3 744 233 133 112 chr4 14429241 14429678 -187898669 - MLT1J LTR MaLR -65 446 1 450 79 0 0 chr4 14430146 14430209 -187898138 + (TA)n Simple_repeat Simple_repeat 1 63 0 645 177 52 0 chr4 14430352 14430486 -187897861 + MER2 DNA MER2_type 16 156 -170 1148 258 59 10 chr4 14430694 14431204 -187897143 + MLT1G3 LTR MaLR 1 590 0 225 298 18 0 chr4 14431689 14431746 -187896601 - L3 LINE CR1 -360 1217 1160 674 130 61 0 chr4 14431770 14431885 -187896462 - L1MB4 LINE L1 0 6180 6059 225 189 0 38 chr4 14431885 14431938 -187896409 - Alu SINE Alu 0 301 251 224 284 90 0 chr4 14432037 14432104 -187896243 - L3 LINE CR1 -514 1063 991 219 311 0 0 chr4 14432263 14432337 -187896010 - MIR SINE MIR -13 249 176 217 271 51 0 chr4 14432697 14432756 -187895591 + L2 LINE L2 3245 3306 -7 207 0 0 0 chr4 14432957 14432980 -187895367 + (T)n Simple_repeat Simple_repeat 1 23 0 2897 133 11 32 chr4 14433013 14433455 -187894892 + Tigger2a DNA MER2_type 1 433 -1 273 306 65 43 chr4 14434273 14434459 -187893888 + MIR SINE MIR 6 195 -67 227 364 53 8 chr4 14434922 14435054 -187893293 - MIR SINE MIR -41 221 84 320 258 89 9 chr4 14435860 14435979 -187892368 - MIR3 SINE MIR 0 208 79 2137 139 0 0 chr4 14436300 14436602 -187891745 + AluSx SINE Alu 6 307 -5 2942 171 26 17 chr4 14437333 14437871 -187890476 - L1MB2 LINE L1 -10 6161 5619 1975 135 7 0 chr4 14438001 14438306 -187890041 - AluSx SINE Alu 0 307 1 286 182 36 0 chr4 14438604 14438659 -187889688 + MER20 DNA MER1_type 114 170 -49 292 281 22 11 chr4 14439163 14439252 -187889095 - L2 LINE L2 0 3272 3183 327 78 0 0 chr4 14439327 14439378 -187888969 + (TG)n Simple_repeat Simple_repeat 2 52 0 707 237 93 47 chr4 14439610 14439883 -187888464 - MER21B LTR ERV1 -2 861 576 3191 135 15 25 chr4 14439883 14440425 -187887922 + LTR49 LTR ERV1 1 536 -59 1345 201 42 40 chr4 14440425 14440779 -187887568 - MER4D LTR ERV1 0 903 549 1804 151 4 4 chr4 14440815 14441093 -187887254 - MER49 LTR ERV1 -645 278 1 340 234 65 0 chr4 14441093 14441152 -187887195 + LTR49 LTR ERV1 530 593 -2 1869 203 38 129 chr4 14441165 14441791 -187886556 - MER21B LTR ERV1 -294 569 1 424 311 46 46 chr4 14441810 14441912 -187886435 + MIR SINE MIR 16 120 -142 2564 185 63 115 chr4 14441912 14442679 -187885668 + LTR8A LTR ERV1 1 727 0 424 311 46 46 chr4 14442679 14442772 -187885575 + MIR SINE MIR 119 211 -51 340 298 124 12 chr4 14443242 14443403 -187884944 + MIR SINE MIR 11 189 -73 1678 150 41 103 chr4 14443945 14444332 -187884015 - MLT1A1 LTR MaLR 0 365 3 519 305 90 30 chr4 14444625 14444858 -187883489 - MIR SINE MIR -5 257 11 241 386 36 18 chr4 14445032 14445234 -187883113 + L2 LINE L2 2269 2477 -837 2591 157 54 5 chr4 14445234 14445642 -187882705 - MSTA LTR MaLR 0 428 1 241 386 36 18 chr4 14445642 14445662 -187882685 + L2 LINE L2 2477 2495 -819 1278 182 16 4 chr4 14447496 14447743 -187880604 - L1PA15 LINE L1 -1 6164 5915 2712 164 9 2 chr4 14447972 14448424 -187879923 - L1PA13 LINE L1 0 6163 5709 6227 42 3 1 chr4 14448476 14449184 -187879163 + L1PA5 LINE L1 5442 6150 -4 343 259 14 109 chr4 14450092 14450239 -187878108 - MIR SINE MIR -101 161 29 320 355 31 0 chr4 14452149 14452320 -187876027 + MIR SINE MIR 4 179 -63 389 77 31 0 chr4 14453134 14453199 -187875148 - L1P LINE L1 -838 5330 5264 3337 102 7 9 chr4 14453199 14453655 -187874692 + L1PA13 LINE L1 5703 6160 -3 261 0 0 0 chr4 14454379 14454408 -187873939 + (TG)n Simple_repeat Simple_repeat 2 30 0 271 310 225 14 chr4 14454492 14454787 -187873560 - L2 LINE L2 -243 3070 2714 225 347 20 0 chr4 14455496 14455594 -187872753 - MIR SINE MIR -1 261 162 204 326 67 0 chr4 14456359 14456448 -187871899 - L3 LINE CR1 -222 1355 1261 1519 184 21 3 chr4 14456570 14456853 -187871494 + AluJo SINE Alu 1 288 -24 303 264 182 9 chr4 14457548 14457658 -187870689 - MIR SINE MIR -64 144 16 259 276 31 31 chr4 14458445 14458543 -187869804 + MIR SINE MIR 32 129 -133 1812 215 104 7 chr4 14458713 14459136 -187869211 - MLT1C LTR MaLR 0 467 4 354 328 76 12 chr4 14461045 14461216 -187867131 - MIR SINE MIR -33 229 48 227 300 100 0 chr4 14461438 14461508 -187866839 - MIR SINE MIR -96 112 36 449 259 56 7 chr4 14461737 14461880 -187866467 + LTR67 LTR ERVL 408 557 0 232 333 46 9 chr4 14462553 14462661 -187865686 + MIR SINE MIR 1 112 -150 519 282 23 50 chr4 14463190 14463410 -187864937 + MIR SINE MIR 49 262 0 207 0 0 0 chr4 14463675 14463698 -187864649 + (T)n Simple_repeat Simple_repeat 1 23 0 2199 117 0 0 chr4 14463824 14464122 -187864225 - AluSx SINE Alu -14 298 1 728 177 48 0 chr4 14464294 14464418 -187863929 - FLAM_C SINE Alu -1 132 3 266 288 224 0 chr4 14464433 14464558 -187863789 + L2 LINE L2 2891 3043 -229 2170 136 0 0 chr4 14464902 14465204 -187863143 - AluSx SINE Alu -10 302 1 29 28 0 0 chr4 14465809 14465845 -187862502 + AT_rich Low_complexity Low_complexity 1 36 0 1020 145 10 97 chr4 14465852 14466059 -187862288 - AluJo SINE Alu -30 282 94 189 0 0 0 chr4 14466264 14466285 -187862062 + (TTC)n Simple_repeat Simple_repeat 1 21 0 718 227 27 41 chr4 14466285 14466505 -187861842 - L1MD3 LINE L1 -6 7989 7773 831 237 6 0 chr4 14466530 14466707 -187861640 - AluJo SINE Alu -12 300 123 207 0 0 0 chr4 14466708 14466731 -187861616 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2106 247 65 19 chr4 14466737 14467381 -187860966 - L1MC4a LINE L1 -223 7585 6912 317 237 0 54 chr4 14468074 14468167 -187860180 + MIR3 SINE MIR 114 201 -7 267 227 0 0 chr4 14468693 14468759 -187859588 + CT-rich Low_complexity Low_complexity 4 69 0 775 229 81 18 chr4 14469162 14469385 -187858962 + MIR SINE MIR 5 241 -21 373 389 79 5 chr4 14469540 14469756 -187858591 - L3 LINE CR1 -85 1492 1261 478 283 146 29 chr4 14469775 14470090 -187858257 - L3 LINE CR1 -84 1493 1142 2515 140 20 0 chr4 14470646 14471003 -187857344 + THE1B LTR MaLR 1 364 0 10978 105 13 60 chr4 14471005 14472659 -187855688 + THE1B-int LTR MaLR 4 1580 0 2330 149 28 6 chr4 14472659 14473015 -187855332 + THE1B LTR MaLR 1 364 0 1741 189 0 3 chr4 14473270 14473572 -187854775 + AluJb SINE Alu 4 304 -8 8206 23 0 0 chr4 14474514 14475457 -187852890 - L1PA3 LINE L1 0 6155 5211 257 314 29 19 chr4 14475587 14475692 -187852655 - L2 LINE L2 -497 2817 2712 256 321 0 0 chr4 14475740 14475824 -187852523 - MIR SINE MIR -70 192 109 352 343 230 10 chr4 14476303 14476507 -187851840 - MIR SINE MIR -11 251 3 226 290 118 11 chr4 14476618 14476711 -187851636 - L2 LINE L2 -4 3268 3166 229 163 0 0 chr4 14476824 14476867 -187851480 - Tigger2 DNA MER2_type -386 2332 2290 254 290 0 0 chr4 14477168 14477237 -187851110 + MIR SINE MIR 109 177 -85 356 191 15 0 chr4 14477461 14477529 -187850818 - Tigger2 DNA MER2_type -2649 69 1 274 255 0 69 chr4 14477598 14477700 -187850647 - MLT1H LTR MaLR -2 547 453 371 270 0 11 chr4 14477920 14478009 -187850338 - MLT2E LTR ERVL -509 119 32 764 263 75 11 chr4 14478317 14478598 -187849749 - ERVL-E LTR ERVL -328 5436 5138 40631 35 21 1 chr4 14478657 14484689 -187843658 - L1PA2 LINE L1 0 6155 1 437 310 22 22 chr4 14485450 14485634 -187842713 + LTR33 LTR ERVL 60 243 -278 427 128 13 13 chr4 14485709 14485787 -187842560 - MADE1 DNA Mariner 0 80 3 302 303 48 28 chr4 14485792 14485937 -187842410 + LTR33 LTR ERVL 374 521 0 212 370 14 0 chr4 14485953 14486026 -187842321 + MIR SINE MIR 67 140 -68 337 268 37 0 chr4 14486124 14486206 -187842141 + L2 LINE L2 3186 3270 -2 871 124 0 51 chr4 14486260 14486397 -187841950 + FLAM_C SINE Alu 1 130 -13 301 26 0 0 chr4 14487704 14487743 -187840604 - MADE1 DNA Mariner -1 79 41 243 0 0 0 chr4 14488958 14488985 -187839362 + (T)n Simple_repeat Simple_repeat 1 27 0 417 308 127 9 chr4 14490401 14490622 -187837725 + MLT1I LTR MaLR 1 247 -162 380 181 14 0 chr4 14490667 14490739 -187837608 + MLT1E1 LTR MaLR 166 238 -416 467 94 0 0 chr4 14490739 14490803 -187837544 + MLT1E1 LTR MaLR 200 263 -391 702 222 155 4 chr4 14490847 14491085 -187837262 + MLT1E1 LTR MaLR 351 653 -1 236 343 112 12 chr4 14491320 14491571 -187836776 - LTR16A LTR ERVL 0 450 175 211 303 30 15 chr4 14492735 14492801 -187835546 - MIR3 SINE MIR -34 174 108 527 240 35 23 chr4 14492823 14492994 -187835353 + MLT1B LTR MaLR 3 175 -215 345 109 0 0 chr4 14493004 14493059 -187835288 + (TC)n Simple_repeat Simple_repeat 1 55 0 1008 224 0 0 chr4 14493061 14493262 -187835085 + MLT1B LTR MaLR 190 390 0 224 345 0 17 chr4 14493354 14493470 -187834877 + GA-rich Low_complexity Low_complexity 4 117 0 205 242 20 121 chr4 14495231 14495330 -187833017 + MIR SINE MIR 72 160 -102 731 243 27 5 chr4 14495424 14495609 -187832738 + MER5A DNA MER1_type 1 189 0 345 303 174 13 chr4 14495612 14495767 -187832580 + MIR SINE MIR 78 257 -5 180 0 0 0 chr4 14496733 14496753 -187831594 + (T)n Simple_repeat Simple_repeat 1 20 0 181 250 77 19 chr4 14497041 14497093 -187831254 - L2 LINE L2 0 3313 3259 238 310 28 0 chr4 14497538 14497609 -187830738 - L2 LINE L2 -5 3308 3236 294 319 25 13 chr4 14498570 14498727 -187829620 + (TCTCTG)n Simple_repeat Simple_repeat 2 160 0 225 376 6 6 chr4 14498754 14498919 -187829428 + CT-rich Low_complexity Low_complexity 2 166 0 407 313 13 27 chr4 14499110 14499260 -187829087 - MIR3 SINE MIR -7 201 54 395 216 73 103 chr4 14500029 14500233 -187828114 + MER106A DNA MER1_type 2 199 -37 539 205 9 0 chr4 14502085 14502197 -187826150 + MIR SINE MIR 86 198 -64 2364 171 28 2 chr4 14502201 14502674 -187825673 - L1MA8 LINE L1 -936 5210 4726 * 4505 157 43 27 chr4 14502671 14502826 -187825521 + L1MA8 LINE L1 5177 5328 -963 1556 196 7 11 chr4 14502826 14503141 -187825206 + AluSx SINE Alu 14 312 0 4505 157 43 27 chr4 14503141 14504028 -187824319 + L1MA8 LINE L1 5328 6236 -55 634 336 67 30 chr4 14505282 14505612 -187822735 - L2 LINE L2 -338 2976 2635 21 0 0 0 chr4 14505660 14505681 -187822666 + AT_rich Low_complexity Low_complexity 1 21 0 1345 206 41 25 chr4 14506769 14507230 -187821117 - MLT2B2 LTR ERVL 0 515 1 298 378 19 7 chr4 14507386 14507577 -187820770 - MIR SINE MIR -56 206 15 254 268 73 57 chr4 14508026 14508149 -187820198 - MIR SINE MIR -67 141 17 582 104 17 17 chr4 14508352 14508467 -187819880 + (TTCC)n Simple_repeat Simple_repeat 2 116 0 3650 153 146 40 chr4 14508676 14509491 -187818856 - MER4D LTR ERV1 0 903 3 287 330 75 0 chr4 14509491 14509597 -187818750 - L2 LINE L2 -52 3220 3107 320 319 62 0 chr4 14510546 14510659 -187817688 - MIR SINE MIR -53 209 90 519 229 46 46 chr4 14511488 14511641 -187816706 + MIR SINE MIR 23 175 -87 621 242 13 19 chr4 14513178 14513335 -187815012 - MLT1J2 LTR MaLR -252 198 43 229 338 78 60 chr4 14513340 14513621 -187814726 + L2 LINE L2 2200 2485 -829 778 256 58 22 chr4 14513684 14513907 -187814440 + MIR SINE MIR 12 242 -20 180 111 0 0 chr4 14514313 14514340 -187814007 + (CACCAT)n Simple_repeat Simple_repeat 4 30 0 959 214 130 101 chr4 14514822 14515337 -187813010 + MLT1F1 LTR MaLR 3 557 -10 238 272 78 29 chr4 14515880 14515983 -187812364 - MIR SINE MIR -5 257 150 362 380 80 12 chr4 14516423 14516673 -187811674 + L3 LINE CR1 1303 1569 -8 926 205 87 111 chr4 14516984 14517364 -187810983 + MLT2D LTR ERVL 1 372 -42 393 22 0 0 chr4 14517364 14517410 -187810937 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 926 205 87 111 chr4 14517410 14517453 -187810894 + MLT2D LTR ERVL 372 414 0 240 366 9 36 chr4 14518703 14518815 -187809532 + L2 LINE L2 2378 2486 -828 412 320 115 15 chr4 14519788 14520178 -187808169 - ERVL LTR ERVL -623 5141 4713 2143 71 7 3 chr4 14521818 14522114 -187806233 + L1PA7 LINE L1 5858 6154 0 294 29 0 0 chr4 14523030 14523065 -187805282 + (CA)n Simple_repeat Simple_repeat 2 36 0 288 288 122 7 chr4 14523192 14523331 -187805016 - L1MC/D LINE L1 -2039 5769 5615 4441 39 2 0 chr4 14524969 14525508 -187802839 + L1PA4 LINE L1 5614 6153 -2 5321 72 11 23 chr4 14525855 14526591 -187801756 - L1PA7 LINE L1 -2 6152 5426 333 0 0 0 chr4 14526983 14527020 -187801327 + (CA)n Simple_repeat Simple_repeat 2 38 0 2357 149 36 48 chr4 14527021 14527195 -187801152 + L1MA5A LINE L1 5797 5972 -325 679 220 0 0 chr4 14527195 14527313 -187801034 + FLAM_C SINE Alu 1 118 -15 2357 149 36 48 chr4 14527313 14527641 -187800706 + L1MA5A LINE L1 5972 6293 -4 500 331 37 34 chr4 14528279 14528575 -187799772 + LTR16A1 LTR ERVL 147 443 -14 210 204 45 0 chr4 14528615 14528659 -187799688 + L2 LINE L2 3227 3272 0 1975 194 60 34 chr4 14528937 14529354 -187798993 + MSTA LTR MaLR 1 428 0 281 334 50 68 chr4 14529480 14529756 -187798591 + L2 LINE L2 2722 2992 -280 26 0 0 0 chr4 14530918 14530944 -187797403 + AT_rich Low_complexity Low_complexity 1 26 0 314 260 114 24 chr4 14531458 14531581 -187796766 + MLT1J2 LTR MaLR 280 413 -37 417 276 127 56 chr4 14532356 14532449 -187795898 + L1M4 LINE L1 2130 2215 -3931 2313 93 0 0 chr4 14532449 14532749 -187795598 - AluY SINE Alu -11 300 1 417 276 127 56 chr4 14532749 14533050 -187795297 + L1M4 LINE L1 2215 2552 -3594 401 301 107 24 chr4 14533115 14533350 -187794997 + L1M4 LINE L1 2676 2941 -3205 1975 143 24 0 chr4 14533350 14533637 -187794710 + AluSx SINE Alu 1 294 -18 401 301 107 24 chr4 14533637 14533690 -187794657 + L1M4 LINE L1 2941 2988 -3158 225 264 28 14 chr4 14533980 14534052 -187794295 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 324 383 0 0 chr4 14534231 14534351 -187793996 + L1ME LINE L1 5604 5723 -447 447 289 174 64 chr4 14534776 14535185 -187793162 - L2 LINE L2 -3 3310 2857 218 245 0 20 chr4 14537312 14537361 -187790986 - MIR3 SINE MIR -13 195 148 232 367 55 23 chr4 14537722 14537850 -187790497 + MIR SINE MIR 20 151 -111 1920 153 54 6 chr4 14539995 14540349 -187787998 + MLT1B LTR MaLR 13 383 -7 215 300 62 12 chr4 14541342 14541422 -187786925 + MIR SINE MIR 120 203 -59 399 219 74 60 chr4 14541423 14541638 -187786709 + MER89 LTR ERV1 2 219 -340 2197 211 16 21 chr4 14542022 14542534 -187785813 + MER89 LTR ERV1 51 559 0 1879 143 143 13 chr4 14542615 14542994 -187785353 + MSTA LTR MaLR 1 428 0 2329 61 11 0 chr4 14543270 14543580 -187784767 - AluY SINE Alu 0 313 1 220 239 15 15 chr4 14544238 14544305 -187784042 + CT-rich Low_complexity Low_complexity 4 70 0 2204 56 42 7 chr4 14545049 14545334 -187783013 - AluY SINE Alu -16 295 1 300 308 85 15 chr4 14545489 14545619 -187782728 + L2 LINE L2 3121 3259 -13 247 313 61 25 chr4 14546078 14546241 -187782106 - LTR16B LTR ERVL -162 302 134 288 236 18 45 chr4 14546494 14546604 -187781743 - HERV16 LTR ERVL -103 4893 4787 967 333 33 50 chr4 14546904 14547767 -187780580 - ERVL LTR ERVL -747 4249 3715 721 386 26 22 chr4 14547934 14548735 -187779612 - ERVL LTR ERVL -1967 3797 2994 682 354 95 11 chr4 14548848 14549506 -187778841 - ERVL LTR ERVL -2542 2454 1742 1098 317 58 20 chr4 14549864 14550918 -187777429 - ERVL LTR ERVL -3738 1258 127 415 307 103 39 chr4 14551031 14551325 -187777022 - LTR16A LTR ERVL -3 447 98 258 360 9 18 chr4 14551682 14551796 -187776551 + MIR SINE MIR 13 125 -137 255 292 14 14 chr4 14551846 14551918 -187776429 + MIR SINE MIR 25 96 -112 758 280 78 4 chr4 14552775 14553007 -187775340 - MIR SINE MIR -1 261 13 264 282 0 14 chr4 14553161 14553232 -187775115 + (CA)n Simple_repeat Simple_repeat 2 71 0 1445 206 25 13 chr4 14553299 14553614 -187774733 - MLT1E LTR MaLR 0 593 275 1195 200 88 57 chr4 14553641 14554112 -187774235 - LTR49 LTR ERV1 -23 572 168 8778 155 37 1 chr4 14554219 14556598 -187771749 - L1PA13 LINE L1 -19 6144 3701 2284 174 0 2 chr4 14556624 14557021 -187771326 - MER57A LTR ERV1 -4 399 4 470 231 17 34 chr4 14557067 14557184 -187771163 - MLT1E LTR MaLR -428 165 51 277 339 66 0 chr4 14557430 14557551 -187770796 + MIR SINE MIR 49 177 -85 484 267 9 0 chr4 14558294 14558399 -187769948 - MER115 DNA AcHobo -434 259 154 224 328 34 28 chr4 14559634 14559804 -187768543 - MIR SINE MIR -31 177 6 550 320 139 34 chr4 14559814 14560345 -187768002 - MLT1G1 LTR MaLR -8 587 1 1571 273 19 58 chr4 14560496 14561063 -187767284 - MLT1H LTR MaLR -2 547 3 183 321 71 36 chr4 14561388 14561487 -187766860 - MIR3 SINE MIR -15 193 84 2298 145 8 23 chr4 14561487 14561880 -187766467 - MLT1B LTR MaLR -2 388 2 183 321 71 36 chr4 14561880 14561948 -187766399 - MIR3 SINE MIR -124 84 20 345 291 115 20 chr4 14562548 14562696 -187765651 + MIR SINE MIR 10 171 -91 606 273 88 19 chr4 14562713 14562929 -187765418 + MIR SINE MIR 22 252 -10 253 287 83 64 chr4 14562977 14563134 -187765213 - MIR3 SINE MIR -16 192 33 263 273 164 0 chr4 14563275 14563385 -187764962 - MIR SINE MIR -35 227 100 189 276 130 73 chr4 14563890 14564013 -187764334 - MIR SINE MIR -63 145 16 304 316 44 7 chr4 14564342 14564478 -187763869 - MIR3 SINE MIR -4 204 64 353 322 41 18 chr4 14564776 14564936 -187763411 - MIR3 SINE MIR -65 143 10 288 238 158 10 chr4 14565063 14565164 -187763183 + MIR SINE MIR 31 146 -116 250 264 0 0 chr4 14565561 14565627 -187762720 + MIR SINE MIR 86 138 -70 561 285 169 7 chr4 14566039 14566334 -187762013 - LTR16C LTR ERVL -2 489 147 2027 162 8 11 chr4 14566617 14566994 -187761353 - MLT1B LTR MaLR 0 390 15 560 318 37 54 chr4 14567026 14567263 -187761084 + L2 LINE L2 2930 3161 -152 294 29 0 0 chr4 14567263 14567298 -187761049 + (CA)n Simple_repeat Simple_repeat 1 35 0 560 318 37 54 chr4 14567298 14567412 -187760935 + L2 LINE L2 3161 3275 -38 240 274 98 59 chr4 14568672 14568774 -187759573 - MIR SINE MIR -68 140 35 504 141 82 0 chr4 14569240 14569315 -187759032 + MLT2B1 LTR ERVL 370 437 -117 258 105 0 0 chr4 14569315 14569353 -187758994 + (TG)n Simple_repeat Simple_repeat 1 38 0 504 141 82 0 chr4 14569353 14569390 -187758957 + MLT2B1 LTR ERVL 437 554 0 266 303 163 11 chr4 14569433 14569611 -187758736 - MLT1J2 LTR MaLR -166 284 80 2283 184 19 7 chr4 14569776 14570195 -187758152 - MSTA LTR MaLR -4 424 1 205 307 160 0 chr4 14570501 14570576 -187757771 - L2 LINE L2 -1 3271 3185 576 229 8 0 chr4 14570622 14570744 -187757603 + MER58B DNA MER1_type 218 340 -1 881 234 18 60 chr4 14570980 14571198 -187757149 - MIR SINE MIR -25 237 29 1228 129 0 62 chr4 14572804 14573032 -187755315 + AluSg/x SINE Alu 103 318 0 2765 195 31 9 chr4 14573753 14574297 -187754050 - MER74A LTR ERVL -2 556 1 2527 198 15 5 chr4 14576047 14576638 -187751709 - L1 LINE L1 -1540 4606 4010 205 267 47 58 chr4 14577012 14577098 -187751249 - MIR3 SINE MIR -7 201 117 287 322 52 0 chr4 14577271 14577386 -187750961 + L3 LINE CR1 1291 1411 -166 254 389 60 28 chr4 14577812 14578028 -187750319 + MIR SINE MIR 2 224 -38 408 307 96 6 chr4 14578896 14579062 -187749285 - MIR3 SINE MIR -1 207 32 185 306 16 16 chr4 14580424 14580486 -187747861 - L2 LINE L2 -11 3261 3200 197 359 109 0 chr4 14580541 14580633 -187747714 + L2 LINE L2 3116 3217 -55 469 224 9 0 chr4 14580645 14580752 -187747595 + MER94 DNA DNA 6 113 -21 204 179 0 0 chr4 14581118 14581157 -187747190 + A-rich Low_complexity Low_complexity 1 39 0 3357 87 15 4 chr4 14581805 14582276 -187746071 - L1PA8A LINE L1 0 6131 5656 207 0 0 0 chr4 14582342 14582365 -187745982 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 267 54 0 0 chr4 14582693 14582730 -187745617 + (TG)n Simple_repeat Simple_repeat 2 38 0 378 199 51 45 chr4 14582858 14583034 -187745313 + (TATG)n Simple_repeat Simple_repeat 4 180 0 285 306 66 16 chr4 14583057 14583178 -187745169 - L3 LINE CR1 -420 1157 1031 184 342 107 48 chr4 14583243 14583555 -187744792 + L2 LINE L2 1704 1996 -1318 3112 188 7 21 chr4 14583555 14584168 -187744179 + MER6A DNA MER2_type 1 604 -1 184 342 107 48 chr4 14584168 14584437 -187743910 + L2 LINE L2 1996 2319 -995 217 291 29 48 chr4 14584554 14584657 -187743690 + MIR SINE MIR 141 241 -21 294 258 45 0 chr4 14584902 14584991 -187743356 - MIR SINE MIR -111 151 59 1368 116 59 13 chr4 14584993 14585282 -187743065 - LTR24C LTR ERV1 -9 626 305 1385 163 170 14 chr4 14585293 14585575 -187742772 + MER1B DNA MER1_type 6 331 -8 1623 113 22 64 chr4 14585586 14585897 -187742450 - LTR24C LTR ERV1 -336 299 2 246 298 32 65 chr4 14586354 14586478 -187741869 - MIR SINE MIR -57 205 86 311 279 66 22 chr4 14586942 14587078 -187741269 - MIR3 SINE MIR -2 206 65 374 320 89 36 chr4 14587460 14587707 -187740640 - MIR SINE MIR 0 262 3 294 280 151 0 chr4 14588023 14588116 -187740231 + MLT1E1 LTR MaLR 1 107 -547 598 304 104 29 chr4 14588563 14588908 -187739439 + MLT1I LTR MaLR 32 402 -7 229 170 19 19 chr4 14589004 14589057 -187739290 + (CAA)n Simple_repeat Simple_repeat 2 54 0 25 31 0 0 chr4 14589572 14589604 -187738743 + AT_rich Low_complexity Low_complexity 1 32 0 490 316 78 42 chr4 14589645 14589838 -187738509 + MIR3 SINE MIR 5 204 -4 897 253 136 82 chr4 14589901 14590422 -187737925 + MLT1H LTR MaLR 1 549 0 670 269 124 29 chr4 14590991 14591297 -187737050 - MLT1E LTR MaLR -9 584 217 2927 195 45 6 chr4 14591404 14592050 -187736297 - L1PB4 LINE L1 0 6156 5486 284 347 77 39 chr4 14592081 14592526 -187735821 + L2 LINE L2 2585 3052 -220 804 205 68 0 chr4 14593207 14593368 -187734979 - MER5A DNA MER1_type 0 189 18 229 280 32 0 chr4 14593617 14593710 -187734637 + MLT1L LTR MaLR 518 613 -2 998 256 23 44 chr4 14595016 14595403 -187732944 + MER20B DNA MER1_type 17 395 -388 227 315 171 0 chr4 14596157 14596268 -187732079 + MIR SINE MIR 25 154 -108 180 229 181 24 chr4 14597026 14597109 -187731238 - MIR SINE MIR -146 116 21 241 234 16 0 chr4 14598587 14598651 -187729696 + MIR SINE MIR 57 121 -141 262 274 283 0 chr4 14598675 14598901 -187729446 - L2 LINE L2 -583 2731 2442 384 239 60 84 chr4 14599577 14599744 -187728603 - MIR SINE MIR -21 241 79 33 0 0 0 chr4 14600938 14600971 -187727376 + AT_rich Low_complexity Low_complexity 1 33 0 362 251 65 47 chr4 14601581 14601744 -187726603 - MIR SINE MIR -60 148 25 180 220 40 40 chr4 14602005 14602055 -187726292 - L2 LINE L2 -2 3311 3262 400 290 67 55 chr4 14602943 14603023 -187725324 - MIR SINE MIR -3 259 181 1952 150 23 0 chr4 14603023 14603323 -187725024 - AluSq SINE Alu -6 307 1 400 290 67 55 chr4 14603323 14603480 -187724867 - MIR SINE MIR -81 181 19 1227 216 0 24 chr4 14604165 14604452 -187723895 - MLT1C LTR MaLR 0 467 188 820 191 51 33 chr4 14604452 14604667 -187723680 - MLT1C LTR MaLR -242 225 7 511 311 93 11 chr4 14605228 14605411 -187722936 + MIR SINE MIR 18 215 -47 427 241 32 97 chr4 14605470 14605686 -187722661 - MIR SINE MIR -54 208 7 203 156 0 0 chr4 14605811 14605843 -187722504 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1113 199 102 89 chr4 14606389 14606780 -187721567 + MSTD LTR MaLR 1 396 0 262 296 93 9 chr4 14609441 14609549 -187718798 + L2 LINE L2 3197 3313 0 4948 31 2 3 chr4 14609564 14610151 -187718196 + L1PA5 LINE L1 5562 6147 -7 1658 180 64 0 chr4 14610587 14610977 -187717370 + MLT2B1 LTR ERVL 1 460 -55 2156 126 24 78 chr4 14611013 14611352 -187716995 + MER83 LTR ERV1 1 310 -138 1801 147 0 72 chr4 14611352 14611686 -187716661 - AluSx SINE Alu -2 310 1 2156 126 24 78 chr4 14611686 14611807 -187716540 + MER83 LTR ERV1 310 436 -12 1025 211 86 27 chr4 14614605 14615007 -187713340 - MLT2B1 LTR ERVL -13 401 1 400 305 100 25 chr4 14615159 14615359 -187712988 + MIR SINE MIR 6 220 -42 303 287 167 0 chr4 14615608 14615716 -187712631 - L2 LINE L2 0 3313 3188 247 196 0 22 chr4 14616297 14616343 -187712004 + L2 LINE L2 3224 3268 -4 21 57 0 0 chr4 14616631 14616666 -187711681 + AT_rich Low_complexity Low_complexity 1 35 0 830 260 28 28 chr4 14616744 14616994 -187711353 + MIR SINE MIR 13 262 0 430 208 50 10 chr4 14618132 14618233 -187710114 + MER45 DNA AcHobo 13 117 -61 405 380 98 17 chr4 14618620 14618967 -187709380 + L2 LINE L2 2860 3234 -38 236 291 51 63 chr4 14619833 14619991 -187708356 + MER5A DNA MER1_type 33 188 -1 184 358 84 11 chr4 14620666 14620761 -187707586 + MER5B DNA MER1_type 50 151 -27 517 267 70 113 chr4 14620812 14621209 -187707138 - L2 LINE L2 0 3313 2934 218 320 39 0 chr4 14621240 14621318 -187707029 - MIR SINE MIR -63 199 119 189 0 0 0 chr4 14621408 14621429 -187706918 + (TG)n Simple_repeat Simple_repeat 2 22 0 428 333 142 6 chr4 14622649 14622811 -187705536 - MER5A DNA MER1_type -2 187 4 287 299 10 41 chr4 14623111 14623208 -187705139 + MER91A DNA MER1_type 103 196 0 308 321 75 70 chr4 14623271 14623643 -187704704 + L2 LINE L2 2508 2915 -357 2078 137 0 16 chr4 14623643 14623958 -187704389 + AluSq SINE Alu 1 310 -3 308 321 75 70 chr4 14623958 14624195 -187704152 + L2 LINE L2 2915 3149 -123 219 36 0 0 chr4 14624321 14624349 -187703998 + (CAGAGA)n Simple_repeat Simple_repeat 1 28 0 467 270 143 25 chr4 14624486 14624682 -187703665 + MIR SINE MIR 31 249 -13 345 297 41 21 chr4 14625772 14625917 -187702430 - MIR SINE MIR -80 182 35 213 175 0 0 chr4 14626097 14626137 -187702210 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 337 325 69 15 chr4 14626188 14626391 -187701956 + MIR SINE MIR 33 246 -16 325 374 24 0 chr4 14627351 14627474 -187700873 + MIR3 SINE MIR 57 182 -26 2363 60 0 0 chr4 14627587 14627908 -187700439 - AluY SINE Alu 0 322 2 308 188 25 12 chr4 14628090 14628170 -187700177 - L1MD3 LINE L1 -13 7982 7902 * 2188 262 73 33 chr4 14628169 14629151 -187699196 - L1MC4a LINE L1 -1305 6503 5482 2465 167 39 0 chr4 14629169 14629636 -187698711 - L1MC1 LINE L1 -7 6326 5842 3385 190 8 37 chr4 14629786 14630763 -187697584 - L1MC1 LINE L1 -468 5865 4905 462 266 19 0 chr4 14630747 14630901 -187697446 - L1MC4a LINE L1 -2309 5499 5343 * 499 293 71 30 chr4 14630903 14631340 -187697007 - L1MC4a LINE L1 -832 5314 4860 352 315 16 24 chr4 14631729 14631856 -187696491 + L2 LINE L2 3146 3271 -1 336 295 192 13 chr4 14632013 14632169 -187696178 - MIR SINE MIR -19 243 60 293 121 0 106 chr4 14632659 14632725 -187695622 + MLT1K LTR MaLR 530 588 0 266 344 123 22 chr4 14632969 14633286 -187695061 - L2 LINE L2 -416 2898 2550 182 384 141 0 chr4 14634324 14634423 -187693924 + MIR SINE MIR 36 148 -114 233 250 62 12 chr4 14634642 14634722 -187693625 - L2 LINE L2 -2 3270 3187 1072 233 42 10 chr4 14635256 14635569 -187692778 + MER33 DNA MER1_type 1 323 -1 1981 98 0 24 chr4 14636692 14637021 -187691326 - AluSq SINE Alu 0 354 33 1141 233 31 97 chr4 14637425 14637980 -187690367 + L1ME2 LINE L1 5656 6164 0 213 300 43 0 chr4 14639324 14639394 -187688953 + MIR3 SINE MIR 120 192 -16 265 188 24 0 chr4 14639546 14639631 -187688716 + (TA)n Simple_repeat Simple_repeat 1 87 0 421 337 61 41 chr4 14639638 14639884 -187688463 - MIR SINE MIR -1 261 11 2057 89 49 26 chr4 14639998 14640302 -187688045 + AluY SINE Alu 1 311 0 207 0 0 0 chr4 14640880 14640903 -187687444 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 324 336 25 0 chr4 14641177 14641299 -187687048 + MIR SINE MIR 81 205 -57 2234 185 30 38 chr4 14641362 14641869 -187686478 + MER74A LTR ERVL 1 503 -55 2308 80 0 7 chr4 14641869 14642168 -187686179 + AluSp SINE Alu 1 297 -16 229 169 42 56 chr4 14642190 14642261 -187686086 + MER74A LTR ERVL 489 558 0 851 175 0 0 chr4 14643173 14643316 -187685031 + MLT1C LTR MaLR 325 467 0 1714 206 82 5 chr4 14643936 14644304 -187684043 - MSTD LTR MaLR 0 396 1 1565 202 34 36 chr4 14644560 14644947 -187683400 - MLT1B LTR MaLR -4 386 1 822 210 17 23 chr4 14645308 14645484 -187682863 + MLT1J2 LTR MaLR 82 256 -194 1882 187 47 6 chr4 14645499 14645858 -187682489 + MLT1B LTR MaLR 17 390 0 307 287 189 37 chr4 14646488 14646652 -187681695 + MIR SINE MIR 66 254 -8 247 323 77 23 chr4 14646664 14646794 -187681553 - MIR SINE MIR -108 154 18 212 315 9 56 chr4 14647379 14647583 -187680764 + MIR3 SINE MIR 8 202 -6 2412 152 31 31 chr4 14647761 14648182 -187680165 + MSTB LTR MaLR 1 421 -5 276 351 42 54 chr4 14648407 14648720 -187679627 + L2 LINE L2 3004 3312 -1 1177 194 14 0 chr4 14648855 14649071 -187679276 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr4 14649192 14649213 -187679134 + AT_rich Low_complexity Low_complexity 1 21 0 573 288 64 69 chr4 14649249 14649715 -187678632 - LTR67 LTR ERVL -2 555 92 356 252 16 31 chr4 14650607 14650734 -187677613 - MLT1I LTR MaLR -8 401 277 294 294 28 46 chr4 14650771 14650880 -187677467 - L2 LINE L2 -183 3089 2983 726 319 85 50 chr4 14650960 14651887 -187676460 - L2 LINE L2 -465 2849 1890 330 293 17 35 chr4 14651912 14652028 -187676319 - L2 LINE L2 0 3313 3200 237 273 0 18 chr4 14652134 14652189 -187676158 + MLT1J1 LTR MaLR 283 336 -110 1356 107 53 31 chr4 14652190 14652316 -187676031 + MER30 DNA MER1_type 1 136 -94 2346 110 0 0 chr4 14652316 14652625 -187675722 - AluSx SINE Alu -3 309 1 1356 107 53 31 chr4 14652625 14652723 -187675624 + MER30 DNA MER1_type 136 230 0 1664 169 71 23 chr4 14652756 14653110 -187675237 - THE1C LTR MaLR 0 375 5 499 314 37 21 chr4 14653496 14653684 -187674663 + MIR SINE MIR 64 254 -8 242 329 122 18 chr4 14654077 14654241 -187674106 - MIR SINE MIR -16 246 66 317 317 99 6 chr4 14654388 14654549 -187673798 + MIR SINE MIR 36 211 -51 2457 123 17 6 chr4 14654706 14655064 -187673283 + THE1B LTR MaLR 1 362 -2 40 37 0 0 chr4 14655666 14655720 -187672627 + AT_rich Low_complexity Low_complexity 1 54 0 418 357 29 25 chr4 14656825 14657105 -187671242 + L1ME4a LINE L1 5623 5903 -218 21 36 0 0 chr4 14657577 14657605 -187670742 + AT_rich Low_complexity Low_complexity 1 28 0 183 129 0 0 chr4 14657992 14658023 -187670324 + (CA)n Simple_repeat Simple_repeat 2 32 0 3780 188 20 22 chr4 14658033 14658767 -187669580 - MER44D DNA MER2_type 0 605 1 362 285 106 34 chr4 14659249 14659635 -187668712 + L1MC5 LINE L1 4021 4434 -1712 708 242 77 0 chr4 14660345 14660539 -187667808 + L1MC5 LINE L1 5723 5931 -1877 32 91 0 0 chr4 14660712 14660800 -187667547 + AT_rich Low_complexity Low_complexity 1 88 0 1877 225 86 90 chr4 14661021 14662043 -187666304 + L1MC5 LINE L1 6503 7523 -438 795 107 0 0 chr4 14662043 14662155 -187666192 + L1PA10 LINE L1 6046 6157 -11 1877 225 86 90 chr4 14662155 14662224 -187666123 + L1MC5 LINE L1 7523 7591 -370 468 311 0 0 chr4 14662380 14662499 -187665848 + L2 LINE L2 3193 3311 -2 341 345 21 14 chr4 14662765 14662910 -187665437 + LTR16C LTR ERVL 181 326 -165 321 303 74 25 chr4 14663002 14663124 -187665223 - MIR SINE MIR -43 219 92 25 51 0 0 chr4 14664194 14664233 -187664114 + AT_rich Low_complexity Low_complexity 1 39 0 2318 103 17 28 chr4 14664967 14665325 -187663022 + THE1A LTR MaLR 2 355 0 282 246 172 8 chr4 14665808 14665925 -187662422 - L1ME2 LINE L1 -11 6153 6010 336 24 0 0 chr4 14665925 14665966 -187662381 + (TG)n Simple_repeat Simple_repeat 1 41 0 282 246 172 8 chr4 14665966 14665982 -187662365 - L1ME2 LINE L1 -154 6010 5998 1741 246 71 70 chr4 14666146 14666764 -187661583 + MLT1E2 LTR MaLR 6 626 0 21 0 0 0 chr4 14666964 14666985 -187661362 + AT_rich Low_complexity Low_complexity 1 21 0 623 308 49 0 chr4 14668082 14668329 -187660018 - MIR SINE MIR -2 260 2 462 345 103 5 chr4 14669351 14669574 -187658773 - MIR SINE MIR -2 260 16 1676 237 99 13 chr4 14669892 14670368 -187657979 - LTR40a LTR ERVL 0 519 3 200 200 0 0 chr4 14670450 14670490 -187657857 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 309 287 43 9 chr4 14670544 14670659 -187657688 + MIR SINE MIR 71 189 -73 267 253 13 13 chr4 14670670 14670749 -187657598 + (TA)n Simple_repeat Simple_repeat 2 80 0 319 274 17 34 chr4 14670931 14671048 -187657299 + CT-rich Low_complexity Low_complexity 2 116 0 256 259 168 30 chr4 14672234 14672365 -187655982 + MIR SINE MIR 35 183 -79 3353 67 2 9 chr4 14672583 14673034 -187655313 - LTR7 LTR ERV1 -2 448 1 2386 96 34 16 chr4 14673034 14673419 -187654928 - HERVH LTR ERV1 0 7713 7322 1372 107 37 5 chr4 14673417 14673633 -187654714 - HERVH LTR ERV1 -1894 5819 5597 * 8707 99 2 6 chr4 14673630 14675355 -187652992 - HERVH LTR ERV1 -1818 5273 3492 * 16730 107 69 11 chr4 14675345 14678013 -187650334 - HERVH LTR ERV1 -4423 3290 467 1111 117 0 0 chr4 14678001 14678155 -187650192 - HERVH LTR ERV1 -7559 154 1 * 3414 67 0 7 chr4 14678157 14678608 -187649739 - LTR7 LTR ERV1 -2 448 1 495 335 57 10 chr4 14678791 14679000 -187649347 - MIR SINE MIR -11 251 33 804 217 37 28 chr4 14679462 14679679 -187648668 - MER20 DNA MER1_type 0 219 1 849 222 9 47 chr4 14680556 14680768 -187647579 + MER63A DNA MER1_type 7 210 0 214 356 115 0 chr4 14683479 14683566 -187644781 - MIR SINE MIR -82 126 30 291 316 59 64 chr4 14684411 14684470 -187643877 - MIR SINE MIR -31 231 173 2256 96 3 17 chr4 14684470 14684771 -187643576 + AluSc SINE Alu 1 297 -12 291 316 59 64 chr4 14684771 14684898 -187643449 - MIR SINE MIR -89 173 46 277 262 0 95 chr4 14685285 14685369 -187642978 - L2 LINE L2 -5 3308 3233 357 290 154 6 chr4 14685409 14685578 -187642769 + MIR SINE MIR 55 248 -14 989 256 87 73 chr4 14685826 14686298 -187642049 + MLT2B1 LTR ERVL 1 482 -38 411 38 0 0 chr4 14686298 14686351 -187641996 + (CA)n Simple_repeat Simple_repeat 2 54 0 989 256 87 73 chr4 14686351 14686385 -187641962 + MLT2B1 LTR ERVL 482 514 -6 270 294 261 6 chr4 14686664 14686844 -187641503 - MIR SINE MIR -16 246 21 246 261 0 43 chr4 14687229 14687298 -187641049 + CT-rich Low_complexity Low_complexity 2 67 0 301 238 0 0 chr4 14687843 14687906 -187640441 - L1MC4 LINE L1 -1339 6703 6641 1837 170 3 0 chr4 14687941 14688235 -187640112 - AluJb SINE Alu -17 295 1 546 329 18 22 chr4 14689673 14689895 -187638452 - LTR16A LTR ERVL -144 306 86 351 229 50 64 chr4 14689933 14690073 -187638274 - MIR SINE MIR -1 261 124 295 340 0 21 chr4 14690442 14690536 -187637811 - MIR SINE MIR -150 112 21 219 69 0 0 chr4 14691117 14691146 -187637201 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 396 317 24 16 chr4 14691821 14691944 -187636403 - MIR SINE MIR -68 140 17 199 43 22 87 chr4 14692187 14692233 -187636114 + (AATAG)n Simple_repeat Simple_repeat 2 44 0 335 323 56 87 chr4 14692454 14692832 -187635515 + MLT1I LTR MaLR 29 394 -15 5175 60 8 0 chr4 14692924 14693572 -187634775 - L1PA7 LINE L1 0 6154 5502 1676 184 0 27 chr4 14694050 14694240 -187634107 - AluJb SINE Alu 0 312 133 369 0 0 0 chr4 14694240 14694281 -187634066 + (TA)n Simple_repeat Simple_repeat 2 42 0 1676 184 0 27 chr4 14694281 14694411 -187633936 - AluJb SINE Alu -179 133 1 189 0 0 0 chr4 14695783 14695804 -187632543 + (A)n Simple_repeat Simple_repeat 1 21 0 365 0 22 0 chr4 14695944 14695989 -187632358 + (CA)n Simple_repeat Simple_repeat 1 46 0 35 0 0 0 chr4 14696024 14696059 -187632288 + AT_rich Low_complexity Low_complexity 1 35 0 225 139 0 0 chr4 14696703 14696746 -187631601 + (CA)n Simple_repeat Simple_repeat 2 44 0 333 282 61 70 chr4 14696821 14697034 -187631313 + L2 LINE L2 3093 3303 -10 184 30 61 0 chr4 14697237 14697270 -187631077 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 252 347 8 50 chr4 14697272 14697393 -187630954 - L2 LINE L2 -305 2967 2852 26 0 0 0 chr4 14698424 14698450 -187629897 + AT_rich Low_complexity Low_complexity 1 26 0 233 98 24 0 chr4 14698592 14698633 -187629714 + (GA)n Simple_repeat Simple_repeat 1 42 0 26 50 0 0 chr4 14698743 14698783 -187629564 + AT_rich Low_complexity Low_complexity 1 40 0 345 264 21 62 chr4 14698797 14698941 -187629406 - MIR SINE MIR -59 203 66 326 336 39 0 chr4 14699204 14699308 -187629039 - L2 LINE L2 -7 3265 3158 351 286 11 0 chr4 14699403 14699494 -187628853 - MER96 DNA MER1_type? -73 102 11 355 335 72 19 chr4 14699839 14700048 -187628299 - ERVL LTR ERVL -642 5122 4903 1002 243 60 76 chr4 14700450 14700692 -187627655 + MLT1A2 LTR MaLR 1 236 -138 2060 105 7 0 chr4 14700692 14700995 -187627352 + AluSg SINE Alu 6 310 0 1002 243 60 76 chr4 14700995 14701119 -187627228 + MLT1A2 LTR MaLR 236 361 -13 623 329 28 12 chr4 14701131 14701386 -187626961 - ERVL LTR ERVL -1282 4482 4224 265 342 19 13 chr4 14701925 14702080 -187626267 + ERVL LTR ERVL 1728 1883 -3881 312 293 57 53 chr4 14702825 14703108 -187625239 - L1M4 LINE L1 -1130 5016 4733 551 269 51 87 chr4 14703405 14703956 -187624391 + L1ME LINE L1 5291 5817 -345 1608 182 7 20 chr4 14704029 14704325 -187624022 + AluJb SINE Alu 1 292 -20 21 0 0 0 chr4 14704565 14704586 -187623761 + AT_rich Low_complexity Low_complexity 1 21 0 389 291 61 80 chr4 14704721 14704934 -187623413 + MIR SINE MIR 6 214 -48 208 336 174 20 chr4 14706143 14706292 -187622055 - MIR3 SINE MIR -27 181 10 2206 129 6 0 chr4 14706601 14706912 -187621435 - AluSp SINE Alu 0 313 1 314 306 108 69 chr4 14707121 14707353 -187620994 + L2 LINE L2 3027 3267 -5 255 274 113 32 chr4 14708465 14708589 -187619758 + L2 LINE L2 1998 2131 -1183 225 252 29 68 chr4 14708635 14708738 -187619609 + MLT1J2 LTR MaLR 42 140 -310 41427 45 2 1 chr4 14708912 14715057 -187613290 - L1PA3 LINE L1 -3 6152 4 1911 167 28 0 chr4 14715628 14715988 -187612359 - L1PA16 LINE L1 -220 5946 5577 2092 285 60 11 chr4 14716026 14716777 -187611570 - Zaphod DNA AcHobo -3238 793 6 321 140 0 0 chr4 14716993 14717050 -187611297 + (CA)n Simple_repeat Simple_repeat 2 58 0 985 259 119 23 chr4 14717508 14718165 -187610182 - L2 LINE L2 0 3313 2592 680 285 8 51 chr4 14718162 14718397 -187609950 - MIR SINE MIR 0 262 38 * 343 215 93 37 chr4 14718333 14718440 -187609907 - L2 LINE L2 -701 2613 2501 * 1980 130 58 3 chr4 14718518 14718811 -187609536 - AluSx SINE Alu -3 309 1 209 375 0 0 chr4 14718882 14718946 -187609401 - MIR SINE MIR -60 148 85 529 138 28 110 chr4 14719207 14719352 -187608995 + MLT1A2 LTR MaLR 1 133 -241 1597 159 69 45 chr4 14719354 14719688 -187608659 + MER61A LTR ERV1 2 343 0 186 103 0 0 chr4 14719715 14719744 -187608603 + (A)n Simple_repeat Simple_repeat 1 29 0 376 343 39 6 chr4 14720093 14720271 -187608076 + MIR SINE MIR 1 184 -78 687 292 5 10 chr4 14720394 14720603 -187607744 + MER20 DNA MER1_type 1 208 -11 929 185 0 0 chr4 14720603 14720774 -187607573 + AluSg/x SINE Alu 130 300 0 2316 121 49 0 chr4 14721449 14721796 -187606551 - THE1B LTR MaLR 0 364 1 310 336 46 0 chr4 14721849 14721980 -187606367 + L2 LINE L2 3132 3268 -4 364 344 23 0 chr4 14722233 14722364 -187605983 - L2 LINE L2 -5 3267 3134 230 219 44 131 chr4 14722427 14722587 -187605760 + MLT2F LTR ERVL 1 146 -517 355 270 76 49 chr4 14722591 14722776 -187605571 + MLT1E3 LTR MaLR 52 241 -383 239 184 20 0 chr4 14722846 14722895 -187605452 + MLT2F LTR ERVL 557 606 -57 262 315 9 28 chr4 14722895 14723003 -187605344 + (CATATA)n Simple_repeat Simple_repeat 4 109 0 395 274 109 23 chr4 14724822 14724997 -187603350 + MLT1J2 LTR MaLR 6 195 -255 201 151 19 38 chr4 14725245 14725298 -187603049 + T-rich Low_complexity Low_complexity 1 52 0 300 343 55 0 chr4 14725950 14726096 -187602251 + MIR SINE MIR 81 234 -28 21 0 0 0 chr4 14726161 14726182 -187602165 + AT_rich Low_complexity Low_complexity 1 21 0 345 270 101 46 chr4 14726189 14726210 -187602137 - MIR SINE MIR -62 146 128 918 219 5 5 chr4 14726210 14726415 -187601932 + MER3 DNA MER1_type 5 209 0 345 270 101 46 chr4 14726415 14726571 -187601776 - MIR SINE MIR -80 128 5 181 309 52 62 chr4 14726659 14726756 -187601591 - L3b LINE CR1 -10 1573 1478 548 344 118 55 chr4 14727396 14728279 -187600068 + L2 LINE L2 1255 2278 -1036 2357 87 3 10 chr4 14728279 14728588 -187599759 - AluY SINE Alu -4 307 1 548 344 118 55 chr4 14728588 14729237 -187599110 + L2 LINE L2 2278 2884 -430 3568 114 6 0 chr4 14729729 14730212 -187598135 - HSMAR1 DNA Mariner 0 1287 802 705 167 9 0 chr4 14730211 14730325 -187598022 + HSMAR1 DNA Mariner 562 676 -611 * 366 169 14 0 chr4 14730330 14730401 -187597946 - HSMAR1 DNA Mariner -1215 72 1 730 137 17 0 chr4 14730500 14730617 -187597730 - AluSp/q SINE Alu -21 292 174 5035 117 52 7 chr4 14730624 14731388 -187596959 - HSMAR1 DNA Mariner -488 799 1 1916 120 13 43 chr4 14731477 14731778 -187596569 - AluSq SINE Alu -21 292 1 1484 204 23 29 chr4 14732151 14732494 -187595853 + MLT1A1 LTR MaLR 25 365 0 434 327 60 20 chr4 14732661 14732912 -187595435 + MIR SINE MIR 2 262 0 754 282 77 55 chr4 14733885 14734264 -187594083 + L2 LINE L2 2925 3311 -2 186 409 63 7 chr4 14734247 14734389 -187593958 + L2 LINE L2 3162 3311 -2 * 193 194 0 0 chr4 14734539 14734575 -187593772 + MIR SINE MIR 217 252 -10 195 282 146 19 chr4 14735889 14735992 -187592355 - MIR SINE MIR -10 252 137 200 385 0 0 chr4 14736330 14736395 -187591952 + MIR3 SINE MIR 129 193 -15 680 268 39 36 chr4 14737074 14737382 -187590965 + MER74B LTR ERVL 179 588 -34 364 238 49 98 chr4 14737514 14737657 -187590690 + MIR SINE MIR 108 243 -19 258 284 0 0 chr4 14737702 14737776 -187590571 + (TA)n Simple_repeat Simple_repeat 2 75 0 253 253 25 51 chr4 14737829 14737908 -187590439 - MIR SINE MIR -96 166 90 276 320 7 52 chr4 14738734 14738887 -187589460 - MIR SINE MIR -82 180 35 230 293 8 65 chr4 14740265 14740388 -187587959 - MIR SINE MIR -77 185 70 1261 264 53 28 chr4 14742412 14742847 -187585500 - L1MCb LINE L1 -5596 449 4 1715 276 58 37 chr4 14742867 14743750 -187584597 - L1MCa LINE L1 -4760 1804 904 33 0 0 0 chr4 14743753 14743786 -187584561 + AT_rich Low_complexity Low_complexity 1 33 0 1524 167 28 31 chr4 14743797 14744084 -187584263 - AluJo SINE Alu -26 286 1 401 252 0 18 chr4 14744085 14744196 -187584151 - L1MCa LINE L1 -5145 901 793 325 128 35 58 chr4 14744365 14744451 -187583896 - L1MA4 LINE L1 -1 6299 6216 271 271 0 14 chr4 14744484 14744554 -187583793 - L1MCa LINE L1 -5537 509 441 289 310 79 50 chr4 14744808 14745111 -187583236 - L1MCa LINE L1 -5698 347 36 1745 160 99 0 chr4 14747083 14747396 -187580951 - MER7A DNA MER2_type -4 342 1 667 306 79 70 chr4 14747470 14748100 -187580247 - L2 LINE L2 -859 2455 1820 492 309 24 52 chr4 14748571 14748823 -187579524 + MIR SINE MIR 13 257 -5 443 221 39 0 chr4 14749184 14749288 -187579059 + Tigger5 DNA MER2_type 2216 2323 0 264 324 28 0 chr4 14749383 14749454 -187578893 - MIR3 SINE MIR -43 165 93 526 292 62 11 chr4 14749592 14749770 -187578577 - MIR3 SINE MIR -6 202 16 851 267 157 12 chr4 14750739 14751140 -187577207 - L1MC4a LINE L1 -1914 5894 5436 939 232 23 5 chr4 14751270 14751490 -187576857 - L1ME LINE L1 -431 5731 5508 238 355 55 9 chr4 14751490 14751600 -187576747 - L2 LINE L2 -275 3038 2924 320 256 78 39 chr4 14751788 14751968 -187576379 - L1MC/D LINE L1 -2040 5768 5582 1162 141 0 0 chr4 14752238 14752437 -187575910 + L1MA6 LINE L1 6102 6300 0 236 270 33 149 chr4 14752690 14752931 -187575416 - MIR SINE MIR -1 261 49 380 262 31 109 chr4 14753250 14753479 -187574868 + MLT1I LTR MaLR 191 401 -8 252 247 224 0 chr4 14753487 14753572 -187574775 + MIR SINE MIR 159 262 0 2414 126 22 0 chr4 14754391 14754747 -187573600 - THE1B LTR MaLR 0 364 1 540 78 13 0 chr4 14754938 14755015 -187573332 - L1PA16 LINE L1 -10 6156 6079 5345 209 22 27 chr4 14755022 14756379 -187571968 - L1 LINE L1 -1087 5059 3710 2975 219 4 11 chr4 14756381 14757143 -187571204 + L1 LINE L1 2946 3702 -2444 211 373 10 47 chr4 14757151 14757344 -187571003 - L2 LINE L2 -17 3296 3111 449 332 76 26 chr4 14757810 14758193 -187570154 + L1ME4a LINE L1 5711 6112 -9 237 299 95 36 chr4 14758235 14758456 -187569891 + L1MC/D LINE L1 5319 5552 -2256 21 0 0 0 chr4 14758661 14758682 -187569665 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 14760064 14760094 -187568253 + AT_rich Low_complexity Low_complexity 1 30 0 462 314 34 0 chr4 14761512 14761687 -187566660 + MIR SINE MIR 68 248 -14 241 398 11 0 chr4 14762538 14762631 -187565716 + MIR3 SINE MIR 3 96 -112 245 332 106 70 chr4 14763426 14763824 -187564523 - L2 LINE L2 -56 3216 2805 191 381 95 0 chr4 14763888 14763993 -187564354 - L2 LINE L2 -993 2321 2207 1658 146 16 12 chr4 14764001 14764255 -187564092 + AluSx SINE Alu 43 297 -15 388 258 13 44 chr4 14764494 14764643 -187563704 - L2 LINE L2 -1349 1965 1820 2186 127 3 3 chr4 14764643 14764951 -187563396 + AluSg SINE Alu 1 308 -2 32 26 0 0 chr4 14765005 14765044 -187563303 + AT_rich Low_complexity Low_complexity 1 39 0 1708 146 9 54 chr4 14765409 14765724 -187562623 + AluSx SINE Alu 1 301 -11 2385 100 0 0 chr4 14766115 14766425 -187561922 + AluSg SINE Alu 1 310 0 426 326 81 46 chr4 14766871 14767353 -187560994 + L1MC4a LINE L1 5427 5925 -1883 332 264 26 39 chr4 14767562 14767717 -187560630 + T-rich Low_complexity Low_complexity 1 153 0 1962 218 77 9 chr4 14768355 14768795 -187559552 + MLT2B1 LTR ERVL 1 470 -50 243 203 0 0 chr4 14768808 14768867 -187559480 + (TG)n Simple_repeat Simple_repeat 2 60 0 1943 124 43 35 chr4 14769088 14769460 -187558887 - THE1C LTR MaLR 0 375 1 379 341 12 38 chr4 14770352 14770542 -187557805 + MIR3 SINE MIR 1 186 -22 216 0 0 0 chr4 14770573 14770597 -187557750 + (TG)n Simple_repeat Simple_repeat 1 24 0 282 230 44 0 chr4 14770598 14770711 -187557636 + (TA)n Simple_repeat Simple_repeat 2 119 0 245 307 47 68 chr4 14770979 14771171 -187557176 - L2 LINE L2 -76 3237 3050 1251 281 96 16 chr4 14771187 14771624 -187556723 + L1M3d LINE L1 2 473 -5418 2643 196 33 113 chr4 14771635 14773112 -187555235 + L1MA8 LINE L1 4795 6172 -119 257 329 20 59 chr4 14773113 14773265 -187555082 - L2 LINE L2 -270 3043 2898 189 0 0 0 chr4 14773267 14773288 -187555059 + (A)n Simple_repeat Simple_repeat 1 21 0 555 263 65 129 chr4 14773338 14773402 -187554945 - L2 LINE L2 -420 2894 2827 2491 71 0 0 chr4 14773402 14773698 -187554649 - AluY SINE Alu -15 296 1 555 263 65 129 chr4 14773698 14773841 -187554506 - L2 LINE L2 -487 2827 2676 2158 120 0 0 chr4 14773841 14774140 -187554207 - AluSg SINE Alu -11 299 1 555 263 65 129 chr4 14774140 14774472 -187553875 - L2 LINE L2 -638 2676 2389 283 232 0 49 chr4 14774555 14774637 -187553710 - MIR SINE MIR -108 154 77 330 315 101 0 chr4 14775814 14775963 -187552384 + MIR SINE MIR 22 185 -77 707 100 0 0 chr4 14776059 14776159 -187552188 - AluSc SINE Alu -17 292 193 229 275 198 0 chr4 14776776 14776867 -187551480 + MIR SINE MIR 23 131 -131 318 109 0 0 chr4 14776867 14776913 -187551434 + LTR16B LTR ERVL 1 46 -418 701 311 34 8 chr4 14776917 14777184 -187551163 + LTR16B LTR ERVL 188 461 -3 332 311 37 30 chr4 14777187 14777322 -187551025 + MIR SINE MIR 127 262 0 225 0 0 0 chr4 14777437 14777462 -187550885 + (A)n Simple_repeat Simple_repeat 1 25 0 187 318 70 39 chr4 14777634 14777763 -187550584 + L2 LINE L2 3169 3301 -12 945 300 60 70 chr4 14778354 14778934 -187549413 - L2 LINE L2 -1 3312 2731 448 349 37 4 chr4 14779009 14779250 -187549097 + ERVL LTR ERVL 4776 5024 -740 1059 297 63 14 chr4 14779692 14780059 -187548288 + LTR16A LTR ERVL 54 438 -12 205 275 0 0 chr4 14780887 14780927 -187547420 + MIR SINE MIR 200 239 -23 1771 264 53 49 chr4 14780982 14781741 -187546606 + LTR41 LTR ERVL 2 763 -10 657 258 50 11 chr4 14782205 14782387 -187545960 + MER5A DNA MER1_type 1 189 0 235 322 34 34 chr4 14782387 14782488 -187545859 - MIR SINE MIR -106 156 56 233 337 81 35 chr4 14782668 14782840 -187545507 + L3 LINE CR1 1397 1576 -1 315 200 263 0 chr4 14783585 14783665 -187544682 + MER58A DNA MER1_type 2 102 -5 1927 240 48 112 chr4 14783686 14784356 -187543991 - L1MEc LINE L1 -5203 1193 633 378 0 0 0 chr4 14784356 14784398 -187543949 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1927 240 48 112 chr4 14784398 14784933 -187543414 - L1MEc LINE L1 -5763 633 65 181 361 16 0 chr4 14785809 14785870 -187542477 + L3 LINE CR1 1414 1475 -102 183 80 0 0 chr4 14786847 14786872 -187541475 + (T)n Simple_repeat Simple_repeat 1 25 0 300 111 0 0 chr4 14787120 14787165 -187541182 + (TA)n Simple_repeat Simple_repeat 2 46 0 25 0 0 0 chr4 14787257 14787282 -187541065 + AT_rich Low_complexity Low_complexity 1 25 0 316 228 26 61 chr4 14787395 14787509 -187540838 - MIR SINE MIR -86 176 67 6257 94 8 2 chr4 14787528 14788460 -187539887 + L1PB1 LINE L1 5215 6151 0 1515 234 40 6 chr4 14788492 14788916 -187539431 - MLT1D LTR MaLR -25 480 1 340 273 61 0 chr4 14789000 14789132 -187539215 + L1ME LINE L1 5573 5712 -409 637 289 248 15 chr4 14789231 14789626 -187538721 + L2 LINE L2 2827 3313 0 201 108 0 0 chr4 14789719 14789756 -187538591 + (TA)n Simple_repeat Simple_repeat 1 37 0 675 272 114 48 chr4 14790061 14790542 -187537805 - LTR33A LTR ERVL 0 523 11 509 30 15 0 chr4 14790912 14790979 -187537368 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 372 97 0 0 chr4 14790990 14791052 -187537295 + (CA)n Simple_repeat Simple_repeat 2 63 0 217 295 184 22 chr4 14791885 14792163 -187536184 + L2 LINE L2 2424 2746 -568 1343 125 5 0 chr4 14792174 14792382 -187535965 - L1PA13 LINE L1 -18 6145 5937 1474 215 24 40 chr4 14793354 14793730 -187534617 + MLT1A2 LTR MaLR 4 373 -1 185 327 0 0 chr4 14794172 14794224 -187534123 - MIR SINE MIR -125 137 86 476 110 70 70 chr4 14794394 14794494 -187533853 + AluSg SINE Alu 38 137 -173 2121 112 3 25 chr4 14794495 14794809 -187533538 + AluSx SINE Alu 2 308 -4 1520 248 33 35 chr4 14794819 14795359 -187532988 + L1ME2 LINE L1 5617 6155 -9 329 335 71 17 chr4 14797261 14797500 -187530847 + L1M4 LINE L1 3547 3798 -2348 22 70 0 0 chr4 14797535 14797578 -187530769 + AT_rich Low_complexity Low_complexity 1 43 0 5246 148 23 25 chr4 14797693 14799263 -187529084 - L1PB1 LINE L1 -8 6143 4587 25 0 0 0 chr4 14799544 14799569 -187528778 + AT_rich Low_complexity Low_complexity 1 25 0 598 320 98 51 chr4 14799634 14799786 -187528561 + L1M4 LINE L1 4233 4376 -1770 2914 13 0 0 chr4 14799786 14800104 -187528243 + AluYb8 SINE Alu 1 318 0 598 320 98 51 chr4 14800104 14800748 -187527599 + L1M4 LINE L1 4376 5066 -1080 4783 167 27 15 chr4 14801214 14802081 -187526266 + L1PA16 LINE L1 5083 5961 -205 1758 200 0 3 chr4 14802081 14802376 -187525971 + AluJb SINE Alu 1 294 -18 4783 167 27 15 chr4 14802376 14802580 -187525767 + L1PA16 LINE L1 5961 6161 -5 791 245 5 11 chr4 14803093 14803277 -187525070 - MIR SINE MIR -27 235 53 279 293 24 12 chr4 14804297 14804379 -187523968 - MIR3 SINE MIR -11 197 115 311 329 74 13 chr4 14804554 14804703 -187523644 + MIR SINE MIR 29 186 -76 350 299 109 38 chr4 14804714 14804898 -187523449 - MIR SINE MIR 0 262 66 327 146 0 0 chr4 14804924 14804979 -187523368 + (TG)n Simple_repeat Simple_repeat 1 55 0 205 152 0 0 chr4 14804980 14805013 -187523334 + GA-rich Low_complexity Low_complexity 1 33 0 207 200 182 0 chr4 14805492 14805547 -187522800 - MIR3 SINE MIR -10 198 134 830 235 24 0 chr4 14805783 14805953 -187522394 + MER58A DNA MER1_type 1 174 -50 401 264 26 90 chr4 14806044 14806199 -187522148 - MER5B DNA MER1_type -8 170 26 184 401 86 20 chr4 14806230 14806427 -187521920 - L2 LINE L2 -225 3047 2838 3015 74 23 9 chr4 14808251 14808681 -187519666 - MLT2A1 LTR ERVL -8 436 1 998 260 32 4 chr4 14809150 14809396 -187518951 - MIR SINE MIR -5 257 5 180 212 0 35 chr4 14810101 14810186 -187518161 + (CATATA)n Simple_repeat Simple_repeat 5 86 0 22 56 0 0 chr4 14810243 14810279 -187518068 + AT_rich Low_complexity Low_complexity 1 36 0 341 145 13 0 chr4 14811477 14811553 -187516794 + GA-rich Low_complexity Low_complexity 2 78 0 243 288 258 8 chr4 14811705 14811837 -187516510 + MIR SINE MIR 72 236 -26 200 361 93 0 chr4 14812309 14812417 -187515930 - L2 LINE L2 -1 3312 3195 1407 149 93 17 chr4 14812612 14812914 -187515433 + THE1C LTR MaLR 51 375 0 243 278 107 47 chr4 14813106 14813275 -187515072 + L2 LINE L2 3095 3273 -40 246 228 0 0 chr4 14813364 14813421 -187514926 - MIR SINE MIR -112 150 94 25 0 0 0 chr4 14815722 14815747 -187512600 + AT_rich Low_complexity Low_complexity 1 25 0 348 263 48 11 chr4 14816286 14816389 -187511958 - MIR SINE MIR -63 145 49 1188 259 37 43 chr4 14818154 14818477 -187509870 - MLT1A2 LTR MaLR -1 373 51 3526 138 47 0 chr4 14818477 14819050 -187509297 - MER4A LTR ERV1 0 600 1 1188 259 37 43 chr4 14819050 14819101 -187509246 - MLT1A2 LTR MaLR -323 51 1 22 0 0 0 chr4 14819363 14819385 -187508962 + AT_rich Low_complexity Low_complexity 1 22 0 192 125 0 0 chr4 14820039 14820071 -187508276 + (T)n Simple_repeat Simple_repeat 1 32 0 1979 158 0 0 chr4 14820579 14820876 -187507471 - AluSq SINE Alu -16 297 1 1597 195 7 82 chr4 14821913 14822354 -187505993 + MLT2D LTR ERVL 1 408 -6 636 247 38 71 chr4 14822475 14822613 -187505734 + MIR SINE MIR 20 148 -114 2186 176 51 10 chr4 14822613 14823022 -187505325 - MSTB LTR MaLR 0 426 1 636 247 38 71 chr4 14823022 14823122 -187505225 + MIR SINE MIR 148 250 -12 229 329 13 0 chr4 14823167 14823243 -187505104 - MIR SINE MIR -12 250 174 185 286 18 36 chr4 14823384 14823440 -187504907 + MIR SINE MIR 197 251 -11 24 32 0 0 chr4 14823624 14823655 -187504692 + AT_rich Low_complexity Low_complexity 1 31 0 1118 263 59 18 chr4 14824004 14824478 -187503869 + MLT1G LTR MaLR 34 552 -3 959 182 82 106 chr4 14824717 14825096 -187503251 + MLT1A2 LTR MaLR 1 370 -4 530 287 109 4 chr4 14825422 14825652 -187502695 + MER46C DNA MER2_type 81 334 -4 4379 118 49 26 chr4 14825731 14827067 -187501280 + pTR5 LTR ERV1 743 2438 0 498 251 37 31 chr4 14828814 14828977 -187499370 + MIR SINE MIR 46 209 -53 291 196 112 49 chr4 14829808 14829951 -187498396 - Charlie7 DNA MER1_type -46 2566 2415 2449 63 0 25 chr4 14830003 14830322 -187498025 - AluY SINE Alu 0 311 1 395 320 34 34 chr4 14830567 14830889 -187497458 - Charlie7 DNA MER1_type -1982 630 309 198 91 0 0 chr4 14830951 14830984 -187497363 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 232 294 65 0 chr4 14831015 14831107 -187497240 + MLT1J LTR MaLR 95 192 -319 2251 109 0 16 chr4 14831398 14831710 -187496637 + AluSc SINE Alu 1 307 -2 636 241 52 68 chr4 14832063 14832254 -187496093 + MER5A DNA MER1_type 1 188 -1 303 213 25 0 chr4 14832747 14832827 -187495520 + MER103 DNA DNA 55 136 -30 219 313 104 0 chr4 14833586 14833720 -187494627 - L2 LINE L2 -316 2956 2809 422 378 15 10 chr4 14833860 14834061 -187494286 + MIR SINE MIR 17 218 -44 1883 261 45 37 chr4 14834187 14834808 -187493539 - MLT1E2 LTR MaLR 0 626 1 3794 152 41 46 chr4 14835354 14836136 -187492211 - LTR1 LTR ERV1 0 785 8 476 282 35 7 chr4 14836854 14836996 -187491351 + MIR SINE MIR 86 231 -31 1032 214 54 80 chr4 14837478 14837904 -187490443 - MER96B DNA MER1_type -1 416 2 341 393 41 7 chr4 14838799 14839089 -187489258 - L2 LINE L2 0 3313 3014 1910 224 37 6 chr4 14839304 14839791 -187488556 - L1MA9 LINE L1 -378 5934 5433 603 185 62 23 chr4 14839769 14839879 -187488468 + L1MA9 LINE L1 5908 6012 -279 * 1597 147 135 18 chr4 14839879 14840213 -187488134 + THE1C LTR MaLR 2 374 -1 603 185 62 23 chr4 14840213 14840380 -187487967 + L1MA9 LINE L1 6012 6284 -7 413 286 58 23 chr4 14841198 14841369 -187486978 - L3 LINE CR1 -214 1363 1187 199 376 12 0 chr4 14841806 14841891 -187486456 + L3 LINE CR1 1054 1139 -438 273 329 0 0 chr4 14841914 14841996 -187486351 + L2 LINE L2 3208 3289 -24 251 330 68 0 chr4 14842064 14842152 -187486195 + L3 LINE CR1 1207 1300 -277 200 210 48 0 chr4 14842217 14842279 -187486068 + (TA)n Simple_repeat Simple_repeat 1 65 0 374 257 34 136 chr4 14842517 14842567 -187485780 + L2 LINE L2 2981 3034 -238 1636 174 24 17 chr4 14842567 14842854 -187485493 + AluJo SINE Alu 6 294 -18 374 257 34 136 chr4 14842854 14843009 -187485338 + L2 LINE L2 3034 3165 -107 347 232 16 80 chr4 14843189 14843314 -187485033 - MLT1H1 LTR MaLR -375 180 64 983 213 36 23 chr4 14843578 14843799 -187484548 - MER58A DNA MER1_type 0 224 1 23 33 0 0 chr4 14844585 14844615 -187483732 + AT_rich Low_complexity Low_complexity 1 30 0 278 98 20 0 chr4 14844877 14844928 -187483419 + (TA)n Simple_repeat Simple_repeat 2 53 0 311 109 0 0 chr4 14844935 14844981 -187483366 - MLT2A2 LTR ERVL -8 445 400 231 36 0 0 chr4 14844988 14845016 -187483331 + (TG)n Simple_repeat Simple_repeat 2 29 0 250 274 12 24 chr4 14845019 14845103 -187483244 + (CATATA)n Simple_repeat Simple_repeat 4 86 0 2805 88 28 2 chr4 14845105 14845501 -187482846 - MLT2A2 LTR ERVL -47 406 1 34 42 0 0 chr4 14845766 14845814 -187482533 + AT_rich Low_complexity Low_complexity 1 48 0 403 322 9 0 chr4 14845899 14846014 -187482333 + L2 LINE L2 3197 3312 -1 579 133 25 50 chr4 14846089 14846194 -187482153 - MLT1H LTR MaLR 0 549 446 1414 203 35 46 chr4 14846194 14846563 -187481784 + MLT1A1 LTR MaLR 1 365 0 579 133 25 50 chr4 14846563 14846577 -187481770 - MLT1H LTR MaLR -103 446 433 423 332 66 26 chr4 14847846 14848072 -187480275 - MIR SINE MIR -20 242 8 1861 161 0 7 chr4 14848121 14848413 -187479934 + AluSx SINE Alu 1 290 -22 366 226 0 89 chr4 14848562 14848686 -187479661 - MLT1I LTR MaLR -2 407 295 1742 162 6 61 chr4 14849021 14849380 -187478967 + MER44D DNA MER2_type 1 609 0 250 335 84 47 chr4 14849841 14850032 -187478315 - MLT1K LTR MaLR -109 479 282 225 352 56 28 chr4 14850800 14850942 -187477405 + MIR SINE MIR 6 151 -111 313 271 24 12 chr4 14851840 14851925 -187476422 - L2 LINE L2 -1 3271 3186 217 320 11 34 chr4 14851968 14852146 -187476201 + GA-rich Low_complexity Low_complexity 5 178 0 1034 248 58 60 chr4 14852550 14852950 -187475397 + MLT1D LTR MaLR 1 399 -106 1808 178 56 16 chr4 14853259 14853635 -187474712 - MSTD LTR MaLR 0 396 6 436 252 50 0 chr4 14856525 14856644 -187471703 - MER63A DNA MER1_type -33 177 53 444 208 0 0 chr4 14856645 14856741 -187471606 + (TA)n Simple_repeat Simple_repeat 2 97 0 229 152 0 0 chr4 14856743 14856789 -187471558 + LTR66 LTR ERVL 394 439 -171 1200 111 0 0 chr4 14856808 14856988 -187471359 + (TA)n Simple_repeat Simple_repeat 1 180 0 225 286 57 0 chr4 14857052 14857122 -187471225 + L2 LINE L2 3196 3269 -3 588 304 40 24 chr4 14858126 14858373 -187469974 + MIR SINE MIR 9 259 -3 849 308 80 28 chr4 14859010 14859669 -187468678 + L2 LINE L2 2579 3293 -20 576 301 41 18 chr4 14859693 14859912 -187468435 - MIR SINE MIR -4 258 35 217 322 0 0 chr4 14860130 14860189 -187468158 + L2 LINE L2 3139 3197 -75 787 277 75 46 chr4 14860214 14860561 -187467786 - L2 LINE L2 -16 3297 2941 220 409 70 9 chr4 14861290 14861405 -187466942 - L2 LINE L2 -429 2885 2764 6956 29 3 0 chr4 14864883 14865745 -187462602 - L1PA4 LINE L1 -1 6154 5290 25 0 0 0 chr4 14866873 14866898 -187461449 + AT_rich Low_complexity Low_complexity 1 25 0 487 372 41 4 chr4 14867021 14867263 -187461084 - MIR SINE MIR 0 262 12 288 312 26 19 chr4 14867452 14867601 -187460746 - MIR3 SINE MIR -68 140 8 232 342 112 0 chr4 14868800 14868961 -187459386 - MIR SINE MIR -1 261 83 390 21 0 0 chr4 14869079 14869126 -187459221 + (CA)n Simple_repeat Simple_repeat 1 47 0 260 284 95 52 chr4 14869133 14869249 -187459098 - MIR3 SINE MIR -51 157 37 237 275 67 67 chr4 14869424 14869602 -187458745 + MIR SINE MIR 35 212 -50 422 198 0 0 chr4 14870093 14870184 -187458163 + MLT2B1 LTR ERVL 1 91 -463 3177 128 6 34 chr4 14870184 14870720 -187457627 - MER4D LTR ERV1 0 872 352 1785 132 124 47 chr4 14870720 14871106 -187457241 - MSTA LTR MaLR 0 428 13 1927 131 38 0 chr4 14871112 14871455 -187456892 - MER4D LTR ERV1 -516 356 1 1052 232 88 47 chr4 14871458 14871798 -187456549 + MLT2B1 LTR ERVL 91 444 -76 244 338 181 6 chr4 14871862 14872022 -187456325 - L2 LINE L2 -9 3263 3076 200 342 68 26 chr4 14872641 14872758 -187455589 - L2 LINE L2 -9 3304 3183 252 374 61 6 chr4 14872831 14872994 -187455353 + MIR SINE MIR 13 184 -78 274 167 33 17 chr4 14873183 14873243 -187455104 + MIR SINE MIR 97 157 -105 3518 67 13 0 chr4 14873516 14873977 -187454370 + L1PA13 LINE L1 5697 6163 0 341 43 21 0 chr4 14874511 14874558 -187453789 + (CA)n Simple_repeat Simple_repeat 1 48 0 307 203 29 0 chr4 14875889 14875958 -187452389 - MIR SINE MIR -12 250 180 363 244 13 0 chr4 14875960 14876038 -187452309 + MIR SINE MIR 164 242 -20 2060 165 31 11 chr4 14876089 14876471 -187451876 - MLT1B LTR MaLR 0 390 1 2139 133 0 9 chr4 14876609 14876924 -187451423 + AluSx SINE Alu 1 312 0 22 0 0 0 chr4 14877746 14877768 -187450579 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 14878405 14878430 -187449917 + AT_rich Low_complexity Low_complexity 1 25 0 324 330 25 0 chr4 14878730 14878848 -187449499 + L2 LINE L2 3193 3313 0 372 43 0 0 chr4 14878979 14879025 -187449322 + (CA)n Simple_repeat Simple_repeat 1 46 0 2149 91 10 3 chr4 14879250 14879547 -187448800 + AluSq SINE Alu 1 299 -14 2208 129 7 0 chr4 14879732 14880041 -187448306 + AluSx SINE Alu 1 311 -1 2298 69 0 3 chr4 14880217 14880521 -187447826 + L1PA8 LINE L1 5863 6165 -7 21 36 0 0 chr4 14881236 14881264 -187447083 + AT_rich Low_complexity Low_complexity 1 28 0 521 274 82 37 chr4 14881264 14881805 -187446542 - L1ME4a LINE L1 -11 6110 5516 356 331 23 12 chr4 14882988 14883146 -187445201 + MIR SINE MIR 32 196 -12 225 274 0 57 chr4 14883515 14883621 -187444726 - MIR SINE MIR -46 216 117 188 336 110 34 chr4 14883654 14883800 -187444547 - L2 LINE L2 -33 3239 3083 830 279 68 4 chr4 14884141 14884378 -187443969 + MIR SINE MIR 4 255 -7 353 180 0 0 chr4 14885231 14885292 -187443055 - AluSc SINE Alu -11 288 228 221 248 46 17 chr4 14885292 14885371 -187442976 - MIR SINE MIR -99 109 20 259 294 0 87 chr4 14885382 14885474 -187442873 + L2 LINE L2 3228 3311 -2 2410 98 0 0 chr4 14885987 14886292 -187442055 - AluSc SINE Alu -4 305 1 936 236 123 36 chr4 14887408 14887742 -187440605 + MLT1A1 LTR MaLR 1 363 -2 40875 45 10 2 chr4 14887800 14893908 -187434439 - L1PA4 LINE L1 0 6155 7 201 350 0 12 chr4 14894356 14894436 -187433911 + MIR SINE MIR 109 187 -75 256 380 83 32 chr4 14895213 14895526 -187432821 + L2 LINE L2 2934 3262 -10 396 205 12 12 chr4 14896009 14896092 -187432255 + MIR3 SINE MIR 72 154 -54 238 264 0 0 chr4 14896397 14896450 -187431897 + (CA)n Simple_repeat Simple_repeat 2 54 0 319 322 160 21 chr4 14896954 14897286 -187431061 - L2 LINE L2 -342 2972 2595 357 350 25 12 chr4 14898105 14898268 -187430079 + L1ME LINE L1 5609 5773 -348 380 298 121 42 chr4 14899479 14899694 -187428653 - MIR SINE MIR -11 251 20 3697 76 2 0 chr4 14899770 14900255 -187428092 + L1PA8 LINE L1 5677 6162 -10 569 284 127 22 chr4 14900553 14900821 -187427526 + L2 LINE L2 2512 2807 -507 707 253 11 11 chr4 14900824 14901002 -187427345 - MER58A DNA MER1_type 0 224 47 982 296 80 33 chr4 14901030 14901483 -187426864 + L2 LINE L2 2832 3305 -8 690 192 35 17 chr4 14901738 14901910 -187426437 + MLT1H LTR MaLR 14 188 -361 690 315 62 10 chr4 14901907 14902215 -187426132 + MLT1H LTR MaLR 226 549 0 1640 223 0 3 chr4 14902595 14902882 -187425465 + AluJo SINE Alu 1 286 -26 222 37 0 0 chr4 14902897 14902924 -187425423 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1779 136 0 78 chr4 14903436 14903767 -187424580 + AluY SINE Alu 1 305 -6 436 273 93 29 chr4 14904553 14904725 -187423622 + MIR SINE MIR 18 200 -62 243 0 0 0 chr4 14905323 14905350 -187422997 + (T)n Simple_repeat Simple_repeat 1 27 0 327 263 0 0 chr4 14905790 14905866 -187422481 + MIR SINE MIR 79 154 -108 182 314 92 60 chr4 14906629 14906814 -187421533 - L2 LINE L2 -511 2803 2613 322 344 97 36 chr4 14906904 14907460 -187420887 - L2 LINE L2 -834 2480 1891 205 188 47 31 chr4 14908503 14908567 -187419780 + A-rich Low_complexity Low_complexity 2 66 0 314 307 71 61 chr4 14908679 14908790 -187419557 + HAL1b LINE L1 220 335 -1013 1889 168 84 25 chr4 14908790 14909194 -187419153 + MSTA LTR MaLR 1 428 0 314 307 71 61 chr4 14909194 14909294 -187419053 + HAL1b LINE L1 335 433 -915 2089 143 0 0 chr4 14909835 14910136 -187418211 + AluSx SINE Alu 1 301 -11 1698 128 49 85 chr4 14910759 14911148 -187417199 + THE1C LTR MaLR 1 375 0 306 370 39 8 chr4 14911706 14911833 -187416514 + HAL1 LINE L1 733 863 -1644 574 280 37 50 chr4 14911901 14912250 -187416097 + MLT1H1 LTR MaLR 32 376 -214 400 314 9 0 chr4 14913565 14913670 -187414677 - MER81 DNA DNA 0 114 9 428 296 20 1 chr4 14914011 14914149 -187414198 - MIR SINE MIR -50 158 25 220 339 42 30 chr4 14914451 14914616 -187413731 + MIR SINE MIR 68 234 -28 324 0 0 0 chr4 14914948 14914984 -187413363 + (TG)n Simple_repeat Simple_repeat 2 37 0 325 202 0 36 chr4 14915572 14915656 -187412691 + MLT1J2 LTR MaLR 42 122 -328 318 292 46 39 chr4 14915659 14915789 -187412558 - MIR SINE MIR -35 227 97 1621 150 95 4 chr4 14916422 14916695 -187411652 + AluJb SINE Alu 1 298 -14 186 301 133 12 chr4 14918487 14918570 -187409777 - MIR SINE MIR -11 251 159 2141 124 0 25 chr4 14918604 14918919 -187409428 - AluSx SINE Alu -5 307 1 199 274 214 24 chr4 14918937 14919021 -187409326 - MIR SINE MIR -134 128 29 366 256 73 107 chr4 14919216 14919450 -187408897 + MIR SINE MIR 13 238 -24 21 0 0 0 chr4 14919925 14919946 -187408401 + AT_rich Low_complexity Low_complexity 1 21 0 1194 107 0 11 chr4 14920689 14920866 -187407481 + L1PA2 LINE L1 5981 6155 0 452 347 65 0 chr4 14920920 14921119 -187407228 - MIR SINE MIR -10 252 41 307 354 93 9 chr4 14921143 14921358 -187406989 + L1ME LINE L1 5571 5803 -318 254 303 34 0 chr4 14921691 14921810 -187406537 - L1ME4a LINE L1 -31 6090 5968 320 358 41 8 chr4 14921976 14922099 -187406248 + L2 LINE L2 3146 3272 0 363 368 77 26 chr4 14922562 14922834 -187405513 - HAL1b LINE L1 -666 682 397 2016 108 87 0 chr4 14922856 14923133 -187405214 - AluSg SINE Alu -9 301 1 2460 138 36 7 chr4 14923489 14923901 -187404446 - MSTB LTR MaLR -2 424 1 238 147 118 0 chr4 14925205 14925273 -187403074 + L1ME4a LINE L1 6045 6120 -1 2287 91 3 0 chr4 14925350 14925646 -187402701 + AluY SINE Alu 1 297 -14 1094 221 59 59 chr4 14925685 14926075 -187402272 - MLT1B LTR MaLR 0 390 1 5963 96 19 17 chr4 14926841 14927997 -187400350 - L1PA13 LINE L1 -1 6162 4990 456 133 11 22 chr4 14928008 14928098 -187400249 - L1PA13 LINE L1 -1611 4535 4447 21 0 0 0 chr4 14928999 14929020 -187399327 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 14929886 14929907 -187398440 + AT_rich Low_complexity Low_complexity 1 21 0 214 293 0 0 chr4 14930401 14930459 -187397888 + CT-rich Low_complexity Low_complexity 3 60 0 206 293 52 0 chr4 14930583 14930641 -187397706 - MIR SINE MIR -155 107 47 1939 139 0 29 chr4 14931150 14931459 -187396888 - AluY SINE Alu -11 300 1 750 288 145 78 chr4 14932885 14933404 -187394943 + MLT1E LTR MaLR 20 578 -15 3353 194 80 0 chr4 14933404 14934083 -187394264 - MER44D DNA MER2_type 0 605 1 750 288 145 78 chr4 14934083 14934101 -187394246 + MLT1E LTR MaLR 578 593 0 23 0 0 0 chr4 14934620 14934643 -187393704 + AT_rich Low_complexity Low_complexity 1 23 0 180 77 0 0 chr4 14935449 14935475 -187392872 + (TG)n Simple_repeat Simple_repeat 1 26 0 1279 233 129 35 chr4 14936373 14936776 -187391571 - MSTB2 LTR MaLR -2 455 15 403 266 43 137 chr4 14937108 14937341 -187391006 + MIR SINE MIR 39 249 -13 379 317 68 44 chr4 14938316 14938411 -187389936 + MIR SINE MIR 14 105 -157 21143 32 4 0 chr4 14938411 14941789 -187386558 - L1PA4 LINE L1 0 6155 2798 379 317 68 44 chr4 14941789 14941898 -187386449 + MIR SINE MIR 105 223 -39 1364 225 100 42 chr4 14942114 14942572 -187385775 + MLT1D LTR MaLR 21 505 0 29 28 0 0 chr4 14943093 14943129 -187385218 + AT_rich Low_complexity Low_complexity 1 36 0 932 181 0 0 chr4 14943134 14943278 -187385069 - FRAM SINE Alu -35 141 1 297 296 113 35 chr4 14943317 14943459 -187384888 + MIR SINE MIR 98 250 -12 840 283 36 83 chr4 14943475 14944196 -187384151 - L2 LINE L2 0 3313 2611 223 359 0 0 chr4 14944806 14944870 -187383477 - L2 LINE L2 -3 3269 3206 30 97 0 0 chr4 14945056 14945149 -187383198 + AT_rich Low_complexity Low_complexity 1 93 0 1032 154 16 0 chr4 14945297 14945479 -187382868 + L1PB1 LINE L1 16 200 -6663 * 12296 124 95 27 chr4 14945471 14947998 -187380349 + L1PB1 LINE L1 625 3327 -3535 33615 42 32 2 chr4 14947999 14952212 -187376135 + L1PA2 LINE L1 3 4347 -1799 9020 34 0 1 chr4 14952212 14954076 -187374271 + L1PA2 LINE L1 4293 6155 0 33615 42 32 2 chr4 14954076 14954093 -187374254 + L1PA2 LINE L1 4347 4362 -1784 2103 89 3 92 chr4 14954096 14954432 -187373915 + AluSg SINE Alu 3 308 -2 10997 197 19 8 chr4 14954432 14957950 -187370397 + L1PB1 LINE L1 3319 6867 0 1627 223 0 6 chr4 14958434 14958748 -187369599 + AluJo SINE Alu 1 312 0 579 176 7 18 chr4 14958832 14959105 -187369242 + (TA)n Simple_repeat Simple_repeat 1 270 0 21 36 0 0 chr4 14959315 14959343 -187369004 + AT_rich Low_complexity Low_complexity 1 28 0 26 98 0 0 chr4 14959703 14959785 -187368562 + AT_rich Low_complexity Low_complexity 1 82 0 2321 121 50 0 chr4 14959896 14960259 -187368088 - L1PA11 LINE L1 -2 6172 5792 661 233 184 45 chr4 14960618 14960643 -187367704 - MER74B LTR ERVL -196 426 406 1714 211 30 19 chr4 14960643 14961004 -187367343 + MLT1A1 LTR MaLR 1 365 0 661 233 184 45 chr4 14961004 14961244 -187367103 - MER74B LTR ERVL -216 406 124 553 281 41 81 chr4 14961373 14961735 -187366612 + L1ME3A LINE L1 2865 3205 -2941 273 283 157 60 chr4 14962079 14962379 -187365968 - MLT1H LTR MaLR -198 351 23 414 317 58 64 chr4 14962577 14963287 -187365060 - L2 LINE L2 -24 3289 2538 323 272 129 65 chr4 14963394 14963673 -187364674 - L2 LINE L2 -1405 1909 1613 292 342 40 40 chr4 14964695 14964973 -187363374 + L1MC/D LINE L1 5529 5806 -2002 1358 284 121 15 chr4 14965038 14965660 -187362687 + L1ME3A LINE L1 5282 5960 -210 309 272 22 22 chr4 14965961 14966053 -187362294 + MIR SINE MIR 100 191 -71 334 230 153 90 chr4 14966354 14966576 -187361771 - MER106A DNA MER1_type 0 236 1 228 241 19 0 chr4 14966617 14966671 -187361676 + MIR SINE MIR 183 237 -25 5937 150 96 8 chr4 14967241 14968332 -187360015 - Tigger1 DNA MER2_type -1230 1188 2 426 294 135 12 chr4 14968339 14968509 -187359838 - L2 LINE L2 -252 3061 2871 11480 204 38 40 chr4 14968908 14973122 -187355225 - L1PA15 LINE L1 -3 6813 2608 4617 232 12 24 chr4 14973727 14975115 -187353232 - L1PA15 LINE L1 -4187 2610 1223 622 197 49 0 chr4 14975117 14975239 -187353108 - FLAM_C SINE Alu -3 130 3 24 77 0 0 chr4 14976464 14976516 -187351831 + AT_rich Low_complexity Low_complexity 1 52 0 264 324 39 10 chr4 14976733 14976835 -187351512 - MIR SINE MIR -52 210 106 198 283 0 0 chr4 14977250 14977296 -187351051 - L2 LINE L2 -1 3312 3267 835 199 6 19 chr4 14978140 14978296 -187350051 + FRAM SINE Alu 1 153 -23 2410 30 40 10 chr4 14978668 14978964 -187349383 - AluY SINE Alu -6 305 1 306 260 146 10 chr4 14978993 14979089 -187349258 + L2 LINE L2 3193 3301 -12 213 205 0 0 chr4 14979144 14979183 -187349164 + L2 LINE L2 3271 3309 -4 7726 157 14 41 chr4 14979496 14980819 -187347528 + HSMAR1 DNA Mariner 1 1287 0 618 211 59 7 chr4 14980857 14981009 -187347338 - FRAM SINE Alu 0 40 1 228 269 0 0 chr4 14981282 14981334 -187347013 - L2 LINE L2 -52 3261 3210 331 322 164 6 chr4 14982556 14982727 -187345620 - MIR SINE MIR -16 246 49 634 302 85 43 chr4 14983552 14984993 -187343354 + L1MEc LINE L1 111 1612 -4784 283 234 31 47 chr4 14985076 14985204 -187343143 + L1M4 LINE L1 4812 4937 -1209 21 0 0 0 chr4 14985438 14985459 -187342888 + AT_rich Low_complexity Low_complexity 1 21 0 236 164 55 0 chr4 14988775 14988830 -187339517 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 667 276 70 5 chr4 14988891 14989105 -187339242 - MIR SINE MIR -33 229 2 198 250 241 9 chr4 14989107 14989215 -187339132 + MIR SINE MIR 102 234 -28 342 125 86 16 chr4 14989645 14989773 -187338574 + (TA)n Simple_repeat Simple_repeat 2 138 0 345 244 61 26 chr4 14989773 14989888 -187338459 - MIR SINE MIR -58 204 86 1484 271 138 6 chr4 14989889 14990405 -187337942 - MLT1E LTR MaLR 0 593 10 230 329 24 12 chr4 14990471 14990553 -187337794 - L2 LINE L2 -1387 1927 1845 191 154 13 51 chr4 14990594 14990672 -187337675 + T-rich Low_complexity Low_complexity 4 78 0 431 275 145 18 chr4 14991963 14992239 -187336108 - MER46C DNA MER2_type -27 311 1 315 262 10 7 chr4 14992250 14992341 -187336006 - MIR SINE MIR -64 144 52 181 262 81 58 chr4 14993002 14993174 -187335173 - L2 LINE L2 -25 3288 3113 5867 95 29 2 chr4 14993266 14994855 -187333492 + L1PA10 LINE L1 4536 6149 -19 198 0 0 0 chr4 14994855 14994877 -187333470 + (CAAAT)n Simple_repeat Simple_repeat 2 23 0 362 244 0 0 chr4 14995242 14995320 -187333027 + Ricksha DNA DNA 26 103 -3143 2039 114 29 109 chr4 14995334 14995782 -187332565 + Ricksha DNA DNA 241 652 -1394 4759 135 27 32 chr4 14995785 14996630 -187331717 + Ricksha DNA DNA 1302 2142 -1104 609 141 50 0 chr4 14996632 14996753 -187331594 + Ricksha DNA DNA 3121 3247 -7 412 348 103 13 chr4 14997024 14997257 -187331090 - L2 LINE L2 -508 2806 2553 541 206 65 0 chr4 14997539 14997646 -187330701 - MIR SINE MIR -33 229 116 2068 115 0 4 chr4 14998016 14998294 -187330053 + AluSq SINE Alu 1 277 -36 195 42 0 0 chr4 14998300 14998324 -187330023 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 231 274 0 0 chr4 14999464 14999526 -187328821 - L2 LINE L2 -5 3267 3206 289 338 133 23 chr4 14999678 15000069 -187328278 - L2 LINE L2 -361 2953 2520 210 404 19 10 chr4 15000352 15000456 -187327891 - L2 LINE L2 -52 3220 3116 2452 273 42 7 chr4 15000795 15001656 -187326691 - ERVL-B1 LTR ERVL -4761 893 28 1217 261 7 74 chr4 15001719 15002267 -187326080 - MLT2B1 LTR ERVL -42 512 3 23 54 0 0 chr4 15002538 15002575 -187325772 + AT_rich Low_complexity Low_complexity 1 37 0 364 320 0 47 chr4 15002603 15002775 -187325572 - LTR16A LTR ERVL -112 338 175 447 304 166 16 chr4 15003226 15003473 -187324874 - MLT1J2 LTR MaLR -131 319 36 1923 132 0 74 chr4 15003480 15003805 -187324542 + AluSc SINE Alu 1 301 -8 230 211 29 136 chr4 15003854 15003970 -187324377 + MIR SINE MIR 40 143 -65 255 246 73 55 chr4 15004067 15004177 -187324170 + L3 LINE CR1 1356 1467 -110 369 293 32 70 chr4 15004622 15004779 -187323568 + MIR3 SINE MIR 19 169 -39 210 297 154 0 chr4 15005126 15005273 -187323074 + MIR SINE MIR 49 219 -43 1206 199 70 35 chr4 15005484 15005825 -187322522 + MLT1A2 LTR MaLR 2 354 -20 21 71 0 0 chr4 15006277 15006319 -187322028 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr4 15006401 15006422 -187321925 + AT_rich Low_complexity Low_complexity 1 21 0 658 214 21 7 chr4 15006503 15006648 -187321699 + MLT1A2 LTR MaLR 1 147 -227 23973 149 21 13 chr4 15006667 15011851 -187316496 + L1PA8A LINE L1 731 5991 -455 1220 113 0 0 chr4 15011849 15012035 -187316312 + L1PA8A LINE L1 4144 4329 -1817 * 3182 105 4 21 chr4 15012055 15012532 -187315815 + L1PA8A LINE L1 5662 6130 -1 246 62 0 0 chr4 15012546 15012578 -187315769 + (TG)n Simple_repeat Simple_repeat 2 33 0 225 204 56 0 chr4 15012578 15012632 -187315715 + MLT1A2 LTR MaLR 334 390 0 291 268 24 12 chr4 15012887 15012969 -187315378 + L2 LINE L2 3185 3267 -5 180 97 0 0 chr4 15013128 15013159 -187315188 + (CA)n Simple_repeat Simple_repeat 2 32 0 694 197 71 0 chr4 15013207 15013334 -187315013 + FRAM SINE Alu 21 156 -20 1897 230 82 22 chr4 15013347 15014072 -187314275 - L1ME2 LINE L1 -153 6011 5237 24 53 0 0 chr4 15014076 15014114 -187314233 + AT_rich Low_complexity Low_complexity 1 38 0 390 313 118 30 chr4 15014714 15015046 -187313301 + L2 LINE L2 1614 1974 -1340 227 227 93 67 chr4 15015055 15015130 -187313217 + MIR SINE MIR 2 78 -184 779 94 0 0 chr4 15015248 15015354 -187312993 - L1P3 LINE L1 -6341 120 15 6765 65 2 8 chr4 15015369 15016400 -187311947 + L1PA7 LINE L1 5147 6151 -3 5931 66 4 0 chr4 15016410 15017182 -187311165 + L1PA7 LINE L1 5372 6146 -8 331 349 72 5 chr4 15017324 15017519 -187310828 + MIR SINE MIR 31 238 -24 350 301 8 32 chr4 15018191 15018314 -187310033 + MIR SINE MIR 127 246 -16 378 275 165 46 chr4 15019970 15020065 -187308282 - MIR SINE MIR 0 262 180 2168 114 7 0 chr4 15020065 15020364 -187307983 - AluSq SINE Alu -12 301 1 378 275 165 46 chr4 15020364 15020486 -187307861 - MIR SINE MIR -82 180 19 198 302 28 38 chr4 15020787 15020893 -187307454 + L2 LINE L2 2888 2992 -280 183 322 41 8 chr4 15020914 15021035 -187307312 + L2 LINE L2 3111 3235 -78 455 306 115 11 chr4 15021114 15021297 -187307050 - MIR SINE MIR -43 219 18 2276 96 0 10 chr4 15021655 15021956 -187306391 - AluSg SINE Alu -12 298 1 996 226 62 103 chr4 15022097 15022262 -187306085 - LTR16B LTR ERVL -9 455 285 1666 26 0 0 chr4 15022262 15022457 -187305890 + L1PA2 LINE L1 5959 6153 -2 996 226 62 103 chr4 15022457 15022759 -187305588 - LTR16B LTR ERVL -179 285 7 356 248 111 8 chr4 15024087 15024204 -187304143 + L2 LINE L2 3185 3313 0 333 68 0 0 chr4 15024464 15024508 -187303839 + (TG)n Simple_repeat Simple_repeat 2 45 0 670 224 102 38 chr4 15024948 15025212 -187303135 - L1MD2 LINE L1 -1 6358 6078 1515 225 36 61 chr4 15025238 15025794 -187302553 - L1MD2 LINE L1 -369 5990 5449 21 0 0 0 chr4 15025964 15025985 -187302362 + AT_rich Low_complexity Low_complexity 1 21 0 306 310 124 0 chr4 15026444 15026573 -187301774 - MIR SINE MIR -43 219 75 21 0 0 0 chr4 15027253 15027274 -187301073 + AT_rich Low_complexity Low_complexity 1 21 0 600 164 0 0 chr4 15028133 15028243 -187300104 + GA-rich Low_complexity Low_complexity 3 112 0 216 345 97 28 chr4 15028298 15028443 -187299904 + MIR3 SINE MIR 54 208 0 2430 84 0 0 chr4 15028588 15028886 -187299461 - AluY SINE Alu -13 298 1 361 304 67 15 chr4 15029088 15029223 -187299124 - L2 LINE L2 0 3313 3172 192 135 0 0 chr4 15029379 15029416 -187298931 + (CA)n Simple_repeat Simple_repeat 2 38 0 230 359 28 14 chr4 15029560 15029702 -187298645 - MLT1K LTR MaLR -345 243 100 290 318 55 69 chr4 15029803 15030092 -187298255 - L2 LINE L2 -205 3108 2824 208 241 133 12 chr4 15030671 15030754 -187297593 - MIR3 SINE MIR -113 95 3 240 257 62 9 chr4 15032641 15032754 -187295593 - L1ME4a LINE L1 -6 6115 5997 271 268 21 21 chr4 15032809 15032833 -187295514 + CT-rich Low_complexity Low_complexity 3 26 -73 2353 141 6 3 chr4 15032833 15033196 -187295151 + THE1B LTR MaLR 1 364 0 271 268 21 21 chr4 15033196 15033268 -187295079 + CT-rich Low_complexity Low_complexity 25 99 0 261 242 11 22 chr4 15033295 15033386 -187294961 + L1MC4a LINE L1 5878 5967 -1841 879 123 7 7 chr4 15033527 15033673 -187294674 - Tigger5 DNA MER2_type 0 2323 2178 320 278 232 21 chr4 15033739 15034205 -187294142 + MLT1G1 LTR MaLR 47 555 0 821 252 128 0 chr4 15034254 15034480 -187293867 + MIR SINE MIR 8 262 0 305 175 53 105 chr4 15034606 15034720 -187293627 - L1 LINE L1 -2421 3725 3618 290 119 0 0 chr4 15035793 15035835 -187292512 + Alu SINE Alu 1 42 -258 208 322 115 0 chr4 15036055 15036142 -187292205 - L2 LINE L2 -610 2704 2608 534 118 0 0 chr4 15036229 15036331 -187292016 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 361 241 19 123 chr4 15036645 15036785 -187291562 + MLT1L LTR MaLR 422 534 -81 2167 124 12 3 chr4 15036785 15037123 -187291224 - L1PA13 LINE L1 -9 6154 5814 361 241 19 123 chr4 15037123 15037194 -187291153 + MLT1L LTR MaLR 534 611 -4 194 326 67 0 chr4 15037196 15037285 -187291062 - L2 LINE L2 -25 3247 3153 1053 64 36 0 chr4 15038215 15038355 -187289992 - L1PA11 LINE L1 -2 6172 6028 2492 136 0 36 chr4 15038355 15038773 -187289574 + L1P LINE L1 3426 3828 -2318 409 218 11 0 chr4 15040100 15040187 -187288160 - MLT1G1 LTR MaLR -8 587 500 361 149 9 114 chr4 15040224 15040338 -187288009 + MLT2B1 LTR ERVL 419 520 0 588 277 95 50 chr4 15040433 15040457 -187287890 - MLT1G1 LTR MaLR -229 313 292 1678 184 19 77 chr4 15040457 15040871 -187287476 + MLT1B LTR MaLR 1 390 0 588 277 95 50 chr4 15040871 15041134 -187287213 - MLT1G1 LTR MaLR -250 292 52 441 304 84 36 chr4 15041202 15041452 -187286895 - MIR SINE MIR 0 262 1 2252 105 0 6 chr4 15042264 15042579 -187285768 + AluSq SINE Alu 1 313 0 185 302 0 0 chr4 15042924 15042967 -187285380 - L2 LINE L2 -30 3242 3200 228 282 42 14 chr4 15043264 15043335 -187285012 + L2 LINE L2 3241 3313 0 204 205 0 0 chr4 15043640 15043679 -187284668 + (TG)n Simple_repeat Simple_repeat 1 39 0 411 292 102 35 chr4 15044595 15044821 -187283526 + MIR SINE MIR 8 248 -14 2358 81 3 0 chr4 15044970 15045293 -187283054 + L1PA13 LINE L1 5836 6159 -4 196 300 229 0 chr4 15045379 15045449 -187282898 - MIR SINE MIR -116 146 61 181 350 164 23 chr4 15045959 15046136 -187282211 - L2 LINE L2 -31 3241 3040 2487 177 5 108 chr4 15046598 15047170 -187281177 - MLT2B1 LTR ERVL 0 520 8 189 0 0 0 chr4 15047496 15047517 -187280830 + (A)n Simple_repeat Simple_repeat 1 21 0 397 298 0 9 chr4 15048108 15048222 -187280125 + L2 LINE L2 3189 3301 -12 275 368 64 0 chr4 15048335 15048460 -187279887 + L2 LINE L2 3138 3270 -2 303 326 11 0 chr4 15049920 15050009 -187278338 + L2 LINE L2 3134 3223 -49 477 282 48 71 chr4 15051192 15051529 -187276818 - L3 LINE CR1 -643 934 606 255 374 88 12 chr4 15051649 15051820 -187276527 + MIR SINE MIR 1 184 -78 288 328 57 25 chr4 15052049 15052171 -187276176 + MIR SINE MIR 51 176 -86 1365 220 74 15 chr4 15052179 15052515 -187275832 - MLT1A1 LTR MaLR -8 357 2 4123 85 27 2 chr4 15052930 15053518 -187274829 + L1PA13 LINE L1 5549 6151 -12 540 361 119 5 chr4 15054725 15055152 -187273195 + HAL1 LINE L1 1105 1580 -927 228 240 10 50 chr4 15055237 15055337 -187273010 + T-rich Low_complexity Low_complexity 4 99 0 432 288 171 44 chr4 15055547 15055712 -187272635 - L1M4 LINE L1 -809 5337 5194 2277 112 0 0 chr4 15055712 15056015 -187272332 - AluSx SINE Alu -8 304 2 432 288 171 44 chr4 15056015 15056259 -187272088 - L1M4 LINE L1 -952 5194 4876 299 234 21 0 chr4 15056339 15056433 -187271914 - L1M4 LINE L1 -1322 4824 4729 1754 256 43 24 chr4 15056525 15056948 -187271399 + L1MD2 LINE L1 4293 4737 -1409 1640 47 51 68 chr4 15056948 15057183 -187271164 - AluY SINE Alu -11 300 70 1754 256 43 24 chr4 15057183 15057471 -187270876 + L1MD2 LINE L1 4737 5018 -1128 955 122 30 25 chr4 15057479 15057676 -187270671 + L1MA4 LINE L1 6103 6300 0 1132 220 4 0 chr4 15057788 15058015 -187270332 + L1MB5 LINE L1 5888 6115 -59 2082 214 76 78 chr4 15058102 15058967 -187269380 + L1MD2 LINE L1 5016 5881 -478 180 0 0 0 chr4 15058967 15058987 -187269360 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2082 214 76 78 chr4 15058987 15059020 -187269327 + L1MD2 LINE L1 5881 5913 -446 2044 131 0 0 chr4 15059020 15059302 -187269045 - AluSx SINE Alu -30 282 1 2082 214 76 78 chr4 15059302 15059379 -187268968 + L1MD2 LINE L1 5913 5988 -371 393 59 0 0 chr4 15059387 15059438 -187268909 + L1PA13 LINE L1 6092 6142 -21 790 239 23 103 chr4 15059450 15059801 -187268546 + L1MD2 LINE L1 6018 6340 -19 536 249 120 75 chr4 15059814 15060307 -187268040 - L1ME3 LINE L1 -238 5924 5410 273 329 123 65 chr4 15060348 15060764 -187267583 + L2 LINE L2 2827 3266 -47 205 386 26 0 chr4 15060829 15060943 -187267404 - L2 LINE L2 -500 2814 2698 218 328 52 35 chr4 15064273 15064389 -187263958 + MIR3 SINE MIR 6 123 -85 310 197 13 26 chr4 15064959 15065035 -187263312 + L1MCa LINE L1 1998 2072 -4354 467 322 60 20 chr4 15065102 15065301 -187263046 + MIR SINE MIR 41 247 -15 412 267 95 60 chr4 15065484 15065949 -187262398 - HAL1b LINE L1 -290 1058 578 1948 163 37 3 chr4 15065976 15066325 -187262022 - MER47A DNA MER2_type -1 365 5 2182 146 50 19 chr4 15066325 15066740 -187261607 + MSTB1 LTR MaLR 1 430 -2 472 300 124 27 chr4 15066777 15067147 -187261200 - HAL1b LINE L1 -871 477 72 464 265 14 104 chr4 15067585 15067796 -187260551 - MIR SINE MIR -1 261 70 290 359 116 15 chr4 15067951 15068210 -187260137 + L2 LINE L2 2579 2863 -451 430 262 83 16 chr4 15068253 15068416 -187259931 - L1PB4 LINE L1 -6 6150 5982 214 310 11 46 chr4 15068568 15068655 -187259692 + L2 LINE L2 3230 3313 0 266 308 100 17 chr4 15068773 15068893 -187259454 + L2 LINE L2 3146 3275 -38 1986 161 0 0 chr4 15068917 15069208 -187259139 + AluSx SINE Alu 3 293 -19 534 347 20 5 chr4 15069939 15070135 -187258212 - MIR SINE MIR -49 213 15 470 301 18 0 chr4 15070226 15070389 -187257958 - MIR SINE MIR -50 212 47 220 318 47 51 chr4 15070489 15070611 -187257736 + MIR SINE MIR 6 129 -79 726 275 126 33 chr4 15071274 15071608 -187256739 - MLT1H1 LTR MaLR -190 365 1 271 237 24 124 chr4 15071717 15071886 -187256461 - MLT1H1-int LTR MaLR -141 1594 1443 216 250 0 111 chr4 15072262 15072334 -187256013 - MIR SINE MIR -73 189 126 1381 281 78 25 chr4 15072627 15073154 -187255193 - MLT1H1 LTR MaLR 0 555 1 413 294 44 40 chr4 15073190 15073465 -187254882 + HAL1 LINE L1 2232 2507 0 766 124 9 0 chr4 15073760 15073873 -187254474 + AluSg1 SINE Alu 1 114 -195 23 0 0 0 chr4 15074214 15074237 -187254110 + AT_rich Low_complexity Low_complexity 1 23 0 1848 130 28 7 chr4 15074758 15075043 -187253304 + AluSg SINE Alu 1 291 -19 1833 109 54 93 chr4 15075430 15075816 -187252531 + THE1C LTR MaLR 5 375 0 314 309 105 40 chr4 15076955 15077107 -187251240 - MIR SINE MIR -81 181 20 746 125 0 0 chr4 15077196 15077316 -187251031 - L1PA15 LINE L1 0 6165 6046 6127 194 25 18 chr4 15077319 15078635 -187249712 + L1P LINE L1 3422 4747 -1399 288 0 0 0 chr4 15078833 15078865 -187249482 + (T)n Simple_repeat Simple_repeat 1 32 0 889 304 88 29 chr4 15080060 15080468 -187247879 - LTR16A LTR ERVL 0 450 19 643 262 30 18 chr4 15080467 15080631 -187247716 + MER45A DNA AcHobo 6 171 -7 * 265 269 92 54 chr4 15081788 15081918 -187246429 + MLT1K LTR MaLR 338 472 -116 2255 66 0 11 chr4 15082589 15082907 -187245440 + AluY SINE Alu 1 315 0 211 350 0 0 chr4 15083377 15083437 -187244910 - L2 LINE L2 -3 3269 3210 305 395 109 8 chr4 15083800 15084159 -187244188 + L2 LINE L2 2136 2530 -784 816 199 0 0 chr4 15084948 15085084 -187243263 + AluJb SINE Alu 156 291 -21 624 27 0 0 chr4 15085143 15085217 -187243130 + (GGAAA)n Simple_repeat Simple_repeat 3 76 0 241 351 40 14 chr4 15085570 15085644 -187242703 + L2 LINE L2 3207 3282 -31 296 410 11 0 chr4 15085683 15085871 -187242476 - MIR SINE MIR -26 236 47 309 109 0 0 chr4 15085944 15085990 -187242357 + (CATA)n Simple_repeat Simple_repeat 3 48 0 397 42 0 0 chr4 15086189 15086237 -187242110 + L1PA6 LINE L1 6094 6141 -13 424 271 117 59 chr4 15086599 15087106 -187241241 + MLT1K LTR MaLR 13 586 -2 24 32 0 0 chr4 15087463 15087494 -187240853 + AT_rich Low_complexity Low_complexity 1 31 0 464 345 59 18 chr4 15087554 15087862 -187240485 + L2 LINE L2 2737 3055 -217 532 293 98 18 chr4 15088696 15088921 -187239426 - MIR SINE MIR -7 255 13 948 188 61 14 chr4 15089722 15089999 -187238348 - MER33 DNA MER1_type -34 290 1 296 286 132 0 chr4 15091234 15091325 -187237022 - L2 LINE L2 -29 3243 3141 21 0 0 0 chr4 15091404 15091425 -187236922 + AT_rich Low_complexity Low_complexity 1 21 0 601 292 36 16 chr4 15091565 15091757 -187236590 + MER63A DNA MER1_type 6 201 -9 393 176 0 0 chr4 15091821 15091895 -187236452 - MLT1B LTR MaLR 0 390 317 1260 70 0 12 chr4 15091897 15092068 -187236279 - L1PA6 LINE L1 -4 6150 5982 1829 23 0 0 chr4 15092068 15092288 -187236059 + L1PA6 LINE L1 5751 5970 -184 694 256 11 66 chr4 15092288 15092561 -187235786 - MLT1B LTR MaLR -67 323 66 1990 143 14 25 chr4 15092585 15092950 -187235397 + THE1C LTR MaLR 15 375 0 288 203 0 0 chr4 15092950 15093005 -187235342 - MLT1B LTR MaLR -335 55 1 2386 66 0 13 chr4 15093216 15093520 -187234827 - AluY SINE Alu -9 302 3 208 316 158 15 chr4 15093921 15094054 -187234293 - L2 LINE L2 -601 2713 2562 219 265 171 72 chr4 15094769 15094798 -187233549 - MIR SINE MIR -49 213 188 2147 87 10 42 chr4 15094798 15095107 -187233240 - AluSx SINE Alu -13 299 1 219 265 171 72 chr4 15095107 15095258 -187233089 - MIR SINE MIR -74 188 15 180 379 0 11 chr4 15095438 15095525 -187232822 + L2 LINE L2 2697 2782 -532 306 308 91 71 chr4 15095763 15096016 -187232331 - L3 LINE CR1 -83 1494 1237 2013 170 0 0 chr4 15096077 15096388 -187231959 - AluSx SINE Alu -1 311 1 292 232 0 0 chr4 15096587 15096643 -187231704 + Tigger3(Golem) DNA MER2_type 2 57 -2972 834 182 45 0 chr4 15096643 15096797 -187231550 + Tigger3(Golem) DNA MER2_type 2867 3027 -2 1176 148 80 0 chr4 15096809 15097046 -187231301 - Tigger2 DNA MER2_type 0 2718 2463 2740 182 42 51 chr4 15097101 15097822 -187230525 - Tigger2 DNA MER2_type -1974 744 31 318 26 0 0 chr4 15097853 15097892 -187230455 + (CA)n Simple_repeat Simple_repeat 2 40 0 252 351 99 0 chr4 15098510 15098621 -187229726 - MER5B DNA MER1_type -1 177 56 257 306 18 63 chr4 15098780 15098891 -187229456 + MIR SINE MIR 87 192 -70 362 312 106 16 chr4 15099110 15099299 -187229048 + L1MC4 LINE L1 7836 8041 -1 359 225 146 0 chr4 15099821 15099910 -187228437 - L2 LINE L2 -2 3270 3169 278 307 54 60 chr4 15100045 15100211 -187228136 - MIR3 SINE MIR -39 169 5 283 340 73 20 chr4 15100699 15100849 -187227498 + MIR SINE MIR 105 262 0 245 170 57 0 chr4 15100857 15100910 -187227437 + MIR SINE MIR 136 191 -71 1871 201 9 5 chr4 15101115 15101547 -187226800 + L1P LINE L1 4361 4794 -1352 2261 132 28 17 chr4 15101655 15102011 -187226336 + THE1B LTR MaLR 1 360 -4 317 255 64 0 chr4 15102054 15102148 -187226199 + MER5A DNA MER1_type 9 108 -81 468 0 0 0 chr4 15102175 15102227 -187226120 + (TG)n Simple_repeat Simple_repeat 2 53 0 22 0 0 0 chr4 15102507 15102529 -187225818 + AT_rich Low_complexity Low_complexity 1 22 0 2016 152 0 0 chr4 15102714 15103041 -187225306 + AluSx SINE Alu 1 327 0 1486 226 31 19 chr4 15103074 15103489 -187224858 - L1ME3 LINE L1 -117 6045 5626 239 346 40 0 chr4 15103706 15103807 -187224540 + MIR3 SINE MIR 90 194 -14 262 325 108 30 chr4 15104731 15104934 -187223413 - MIR SINE MIR -19 243 25 641 291 39 6 chr4 15105173 15105355 -187222992 + MIR SINE MIR 18 205 -57 220 364 136 0 chr4 15105714 15105832 -187222515 - L2 LINE L2 -37 3235 3102 620 117 0 26 chr4 15106102 15106256 -187222091 + (TA)n Simple_repeat Simple_repeat 1 150 0 2169 84 42 11 chr4 15106256 15106542 -187221805 - AluY SINE Alu -16 295 1 225 196 0 0 chr4 15106672 15106718 -187221629 - MLT1-int LTR MaLR -115 1256 1211 318 345 9 9 chr4 15107349 15107462 -187220885 + L2 LINE L2 3151 3263 -9 342 115 0 0 chr4 15107809 15107861 -187220486 + (TCTCC)n Simple_repeat Simple_repeat 4 55 0 495 171 8 17 chr4 15107861 15107978 -187220369 + CT-rich Low_complexity Low_complexity 2 117 0 290 266 169 64 chr4 15108483 15108750 -187219597 + MLT1H LTR MaLR 1 295 -254 770 223 26 10 chr4 15109361 15109554 -187218793 + MLT2D LTR ERVL 1 196 -218 182 118 29 0 chr4 15109559 15109593 -187218754 + A-rich Low_complexity Low_complexity 4 38 0 845 113 7 0 chr4 15109699 15109820 -187218527 + (GGGAA)n Simple_repeat Simple_repeat 1 263 0 845 113 7 0 chr4 15109820 15109961 -187218386 + (GGGAA)n Simple_repeat Simple_repeat 4 145 0 477 290 6 22 chr4 15110044 15110204 -187218143 + MLT2B1 LTR ERVL 299 457 -63 243 0 0 0 chr4 15110204 15110231 -187218116 + (TC)n Simple_repeat Simple_repeat 2 28 0 477 290 6 22 chr4 15110231 15110253 -187218094 + MLT2B1 LTR ERVL 457 478 -42 270 0 0 0 chr4 15110253 15110283 -187218064 + (TG)n Simple_repeat Simple_repeat 2 31 0 279 173 0 0 chr4 15110298 15110350 -187217997 + (TA)n Simple_repeat Simple_repeat 1 52 0 724 253 6 6 chr4 15110460 15110618 -187217729 + AluJo SINE Alu 121 278 -34 804 65 0 0 chr4 15110623 15110730 -187217617 + (GGAA)n Simple_repeat Simple_repeat 4 110 0 213 286 16 0 chr4 15110740 15110803 -187217544 + GA-rich Low_complexity Low_complexity 1 64 0 315 278 137 34 chr4 15110954 15111159 -187217188 + L1ME LINE L1 5348 5573 -786 247 290 105 20 chr4 15111277 15111477 -187216870 + L1ME LINE L1 5621 5837 -284 1280 292 65 66 chr4 15111945 15112775 -187215572 - L2 LINE L2 -24 3289 2129 525 270 79 60 chr4 15113557 15113809 -187214538 + MIR SINE MIR 6 262 0 1915 214 59 5 chr4 15113848 15114291 -187214056 + MLT1C LTR MaLR 1 467 0 246 253 58 46 chr4 15114843 15114930 -187213417 + MLT1I LTR MaLR 64 151 -258 504 241 9 0 chr4 15115956 15116064 -187212283 - MER58A DNA MER1_type 0 153 45 334 343 57 43 chr4 15116069 15116279 -187212068 - L2 LINE L2 -341 2973 2761 185 342 25 0 chr4 15116279 15116358 -187211989 - L2 LINE L2 -805 2509 2429 337 250 91 74 chr4 15116516 15116692 -187211655 + MIR SINE MIR 5 183 -79 902 147 88 0 chr4 15116722 15116905 -187211442 + AluSq SINE Alu 136 330 0 245 274 108 29 chr4 15116956 15116974 -187211373 - L2 LINE L2 0 3313 3298 1813 179 3 3 chr4 15116974 15117281 -187211066 - AluJo SINE Alu -5 307 1 245 274 108 29 chr4 15117281 15117364 -187210983 - L2 LINE L2 -15 3298 3204 825 224 20 15 chr4 15117430 15117626 -187210721 + MER20 DNA MER1_type 1 197 -22 267 31 0 0 chr4 15117646 15117678 -187210669 + (TG)n Simple_repeat Simple_repeat 1 32 0 183 365 167 0 chr4 15117705 15117861 -187210486 - L2 LINE L2 -178 3135 2954 21 0 0 0 chr4 15117896 15117917 -187210430 + AT_rich Low_complexity Low_complexity 1 21 0 1577 197 13 26 chr4 15118089 15118393 -187209954 - AluJb SINE Alu -12 300 1 286 327 27 33 chr4 15118422 15118572 -187209775 + MIR SINE MIR 100 248 -14 200 268 0 0 chr4 15118647 15118688 -187209659 + L2 LINE L2 2442 2482 -832 205 156 0 44 chr4 15120318 15120363 -187207984 + (TATATG)n Simple_repeat Simple_repeat 1 43 0 540 160 0 0 chr4 15121309 15121409 -187206938 + GA-rich Low_complexity Low_complexity 1 100 0 216 304 14 0 chr4 15121532 15121601 -187206746 - MIR SINE MIR -115 147 78 225 262 16 49 chr4 15121647 15121708 -187206639 - L2 LINE L2 -82 3190 3132 3637 144 8 16 chr4 15122668 15123286 -187205061 + L1PA15 LINE L1 5532 6144 -21 606 281 26 1 chr4 15123498 15123669 -187204678 - MIR SINE MIR -63 145 19 999 293 87 15 chr4 15124200 15124589 -187203758 - L2 LINE L2 -861 2453 2037 3437 201 42 15 chr4 15124618 15125481 -187202866 - L1MB4 LINE L1 -7 6173 5288 581 214 42 111 chr4 15125480 15125643 -187202704 + L1M4 LINE L1 4864 5037 -1109 * 309 86 0 69 chr4 15125643 15125701 -187202646 - AluSc SINE Alu -4 295 242 581 214 42 111 chr4 15125701 15125738 -187202609 + L1M4 LINE L1 5037 5075 -1071 1941 181 56 17 chr4 15125738 15126148 -187202199 + MSTB LTR MaLR 1 426 0 581 214 42 111 chr4 15126148 15126366 -187201981 + L1M4 LINE L1 5075 5276 -870 1195 242 78 14 chr4 15126402 15126762 -187201585 - L2 LINE L2 -1343 1971 1589 2243 133 0 0 chr4 15127413 15127721 -187200626 + AluSx SINE Alu 5 312 0 1762 202 26 0 chr4 15127805 15128182 -187200165 - MER57A LTR ERV1 -9 394 8 270 193 0 0 chr4 15128473 15128530 -187199817 + (TG)n Simple_repeat Simple_repeat 2 58 0 584 230 37 31 chr4 15128604 15128765 -187199582 + MLT1D LTR MaLR 3 164 -341 40808 35 21 1 chr4 15128786 15134816 -187193531 - L1PA2 LINE L1 0 6155 1 1245 210 38 7 chr4 15134870 15135160 -187193187 + MLT1D LTR MaLR 207 505 0 203 246 217 0 chr4 15135160 15135229 -187193118 - MIR SINE MIR -141 121 38 2135 100 14 14 chr4 15135696 15135986 -187192361 - AluSq SINE Alu -23 290 1 1685 137 24 27 chr4 15135986 15136278 -187192069 + MER7A DNA MER2_type 57 345 -1 181 255 0 20 chr4 15137539 15137590 -187190757 + L2 LINE L2 3264 3313 0 257 312 1 84 chr4 15137676 15137818 -187190529 - MIR3 SINE MIR -73 135 11 184 246 54 78 chr4 15138360 15138527 -187189820 + L2 LINE L2 2614 2776 -538 205 83 0 28 chr4 15138826 15138862 -187189485 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 474 266 112 48 chr4 15138942 15139130 -187189217 - MIR SINE MIR -18 244 45 1689 168 10 10 chr4 15140438 15140790 -187187557 + L1MA8 LINE L1 5959 6297 0 237 139 0 0 chr4 15141207 15141250 -187187097 + (CA)n Simple_repeat Simple_repeat 2 44 0 2689 102 5 3 chr4 15141729 15142103 -187186244 - THE1C LTR MaLR 0 375 1 320 250 33 25 chr4 15142309 15142429 -187185918 + L1MDa LINE L1 62 182 -6358 926 230 33 15 chr4 15142832 15143163 -187185184 + L1MDa LINE L1 1004 1340 -5203 531 200 0 0 chr4 15143168 15143263 -187185084 - THE1C LTR MaLR -243 132 38 381 146 30 3 chr4 15143457 15143545 -187184802 - MLT1G LTR MaLR 0 581 463 418 308 113 39 chr4 15143579 15143993 -187184354 - MLT1G LTR MaLR -180 410 1 1123 212 9 0 chr4 15144035 15144247 -187184100 + MER58A DNA MER1_type 10 223 -1 393 321 52 44 chr4 15144341 15144590 -187183757 + L2 LINE L2 2898 3148 -165 204 342 103 8 chr4 15145268 15145385 -187182962 - MIR SINE MIR -26 236 109 723 281 92 4 chr4 15145419 15145647 -187182700 - MIR SINE MIR -1 261 14 410 347 7 13 chr4 15146095 15146245 -187182102 + MIR SINE MIR 46 194 -68 291 337 122 10 chr4 15147186 15147382 -187180965 - L2 LINE L2 -785 2529 2312 195 250 67 17 chr4 15147391 15147451 -187180896 + L2 LINE L2 1745 1807 -1507 437 329 61 0 chr4 15147615 15147779 -187180568 + L2 LINE L2 2925 3098 -215 260 306 107 46 chr4 15147831 15148027 -187180320 + L2 LINE L2 3099 3306 -7 827 142 7 0 chr4 15148738 15148879 -187179468 - L1PA16 LINE L1 -1 6165 6024 412 280 32 54 chr4 15148958 15149144 -187179203 - MIR SINE MIR -78 184 3 420 290 109 5 chr4 15149584 15149777 -187178570 + MIR SINE MIR 38 250 -12 354 351 21 12 chr4 15150103 15150269 -187178078 + MIR SINE MIR 58 227 -35 271 235 20 49 chr4 15150322 15150424 -187177923 + GA-rich Low_complexity Low_complexity 4 102 0 1903 185 111 36 chr4 15150518 15150906 -187177441 - MLT1D LTR MaLR 0 505 75 189 0 0 0 chr4 15150906 15150927 -187177420 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 1903 185 111 36 chr4 15150927 15151008 -187177339 - MLT1D LTR MaLR -430 75 1 25 0 0 0 chr4 15151056 15151081 -187177266 + AT_rich Low_complexity Low_complexity 1 25 0 196 281 47 31 chr4 15151217 15151281 -187177066 + MIR3 SINE MIR 144 208 0 354 281 9 44 chr4 15152349 15152463 -187175884 + MLT1K LTR MaLR 189 298 -290 186 239 23 23 chr4 15152577 15152665 -187175682 + GA-rich Low_complexity Low_complexity 3 90 0 188 33 0 33 chr4 15152737 15152767 -187175580 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 3068 16 0 0 chr4 15152772 15153139 -187175208 - L1HS LINE L1 0 6155 5789 1702 160 7 24 chr4 15153139 15153458 -187174889 - AluSx SINE Alu 0 315 2 201 279 16 16 chr4 15154392 15154453 -187173894 - L2 LINE L2 -60 3253 3193 265 253 27 13 chr4 15154479 15154554 -187173793 + L2 LINE L2 2625 2700 -614 * 811 327 147 7 chr4 15154545 15155076 -187173271 - L2 LINE L2 -253 3060 2455 1618 134 33 39 chr4 15155633 15155940 -187172407 + THE1C LTR MaLR 2 306 -69 296 295 65 29 chr4 15156148 15156287 -187172060 - MIR SINE MIR 0 262 119 315 0 0 0 chr4 15156326 15156361 -187171986 + (TA)n Simple_repeat Simple_repeat 1 35 0 * 333 47 0 0 chr4 15156360 15156403 -187171944 + (GA)n Simple_repeat Simple_repeat 2 44 0 180 306 121 48 chr4 15156439 15156563 -187171784 + L2 LINE L2 3137 3269 -3 408 158 0 0 chr4 15156899 15156975 -187171372 + GA-rich Low_complexity Low_complexity 1 76 0 444 319 115 30 chr4 15157665 15158065 -187170282 + L2 LINE L2 2618 3063 -209 311 265 0 29 chr4 15158868 15158970 -187169377 + (TGAA)n Simple_repeat Simple_repeat 3 101 0 2556 111 8 13 chr4 15159423 15159800 -187168547 + THE1C LTR MaLR 1 375 0 9218 124 51 39 chr4 15159802 15161360 -187166987 + THE1C-int LTR MaLR 3 1580 0 2297 135 13 19 chr4 15161360 15161737 -187166610 + THE1C LTR MaLR 1 375 0 242 218 18 18 chr4 15161778 15161833 -187166514 + L3 LINE CR1 1519 1573 -4 407 305 51 0 chr4 15161879 15162056 -187166291 - LTR33A LTR ERVL -1 522 337 518 206 115 57 chr4 15162105 15162314 -187166033 - LTR50 LTR ERVL -572 223 3 257 301 130 63 chr4 15162655 15162894 -187165453 + MIR SINE MIR 6 260 -2 22 0 0 0 chr4 15164154 15164176 -187164171 + AT_rich Low_complexity Low_complexity 1 22 0 583 293 5 50 chr4 15164424 15164622 -187163725 - MIR SINE MIR -54 208 20 2073 119 10 3 chr4 15165199 15165493 -187162854 - AluSc SINE Alu -13 296 1 681 224 53 0 chr4 15165549 15165719 -187162628 - MIR SINE MIR -10 252 74 200 327 96 0 chr4 15165770 15165874 -187162473 + MIR SINE MIR 123 236 -26 206 283 59 59 chr4 15165965 15166117 -187162230 + MIR SINE MIR 50 201 -61 2258 213 65 37 chr4 15166120 15166286 -187162061 + MLT1E LTR MaLR 4 164 -429 1312 132 44 31 chr4 15166286 15166513 -187161834 - MER30 DNA MER1_type 0 230 1 2258 213 65 37 chr4 15166513 15166920 -187161427 + MLT1E LTR MaLR 164 593 0 209 274 34 120 chr4 15167919 15168036 -187160311 - MIR SINE MIR -81 127 21 2533 67 3 0 chr4 15168079 15168407 -187159940 + L1PA8 LINE L1 5838 6166 -6 182 250 0 39 chr4 15168844 15168896 -187159451 - L2 LINE L2 0 3313 3264 927 265 77 8 chr4 15169167 15169401 -187158946 + MIR SINE MIR 13 262 0 380 284 35 7 chr4 15169743 15169884 -187158463 + MIR SINE MIR 32 176 -86 258 259 39 49 chr4 15171120 15171256 -187157091 + MIR SINE MIR 50 182 -63 239 367 39 33 chr4 15171455 15171635 -187156712 - L2 LINE L2 -173 3099 2919 2563 105 8 3 chr4 15171655 15172016 -187156331 + THE1B LTR MaLR 1 363 -1 354 309 24 0 chr4 15172899 15173025 -187155322 - MER94 DNA DNA -5 129 1 735 174 37 0 chr4 15173107 15173297 -187155050 - Charlie5 DNA MER1_type -49 2563 2367 270 0 0 0 chr4 15174131 15174161 -187154186 + (CA)n Simple_repeat Simple_repeat 2 31 0 2105 113 61 28 chr4 15174270 15174633 -187153714 + THE1C LTR MaLR 1 375 0 187 281 198 31 chr4 15175311 15175407 -187152940 + MIR SINE MIR 3 114 -148 526 303 114 13 chr4 15175424 15175652 -187152695 - MIR SINE MIR 0 262 12 842 204 7 0 chr4 15175951 15176103 -187152244 - FRAM SINE Alu -10 156 4 467 236 35 7 chr4 15176221 15176365 -187151982 - MER65B LTR ERV1 -383 148 1 249 260 71 63 chr4 15177003 15177130 -187151217 + MIR3 SINE MIR 15 142 -66 39 68 0 19 chr4 15177185 15177227 -187151120 + AT_rich Low_complexity Low_complexity 1 42 -59 193 0 94 0 chr4 15177227 15177259 -187151088 + T-rich Low_complexity Low_complexity 3 37 0 39 68 0 19 chr4 15177259 15177319 -187151028 + AT_rich Low_complexity Low_complexity 42 101 0 27 29 0 0 chr4 15178051 15178085 -187150262 + AT_rich Low_complexity Low_complexity 1 34 0 281 344 57 38 chr4 15178632 15178789 -187149558 - MIR SINE MIR 0 262 103 272 229 60 36 chr4 15178997 15179080 -187149267 - MLT1I LTR MaLR -197 212 128 362 289 58 58 chr4 15179538 15179711 -187148636 - MIR SINE MIR -4 258 86 462 381 115 19 chr4 15180899 15181379 -187146968 + L1ME3A LINE L1 57 582 -5537 765 287 68 45 chr4 15181771 15183239 -187145108 + L1ME3A LINE L1 4421 5923 -230 2120 32 0 0 chr4 15183443 15183690 -187144657 + L1PA5 LINE L1 5900 6146 -8 46 62 0 0 chr4 15183703 15183784 -187144563 + AT_rich Low_complexity Low_complexity 1 81 0 276 310 115 11 chr4 15183881 15184055 -187144292 - MIR SINE MIR -2 260 69 201 108 0 0 chr4 15184316 15184353 -187143994 + (A)n Simple_repeat Simple_repeat 1 37 0 389 270 108 45 chr4 15184439 15184661 -187143686 - MIR SINE MIR -6 256 21 23 54 0 0 chr4 15184814 15184851 -187143496 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr4 15184889 15184912 -187143435 + AT_rich Low_complexity Low_complexity 1 23 0 469 253 11 113 chr4 15386154 15386340 -186942007 - MIR SINE MIR -10 252 86 183 209 163 0 chr4 15386913 15386956 -186941391 - L2 LINE L2 -12 3260 3211 291 200 14 29 chr4 15386978 15387048 -186941299 + MIR SINE MIR 146 214 -48 325 331 62 12 chr4 15387074 15387234 -186941113 - MIR SINE MIR -15 247 80 199 298 0 0 chr4 15387355 15387412 -186940935 - L2 LINE L2 0 3272 3216 * 672 296 18 22 chr4 15387379 15387605 -186940742 - MIR SINE MIR -18 244 20 270 259 14 5 chr4 15388793 15388882 -186939465 + MIR SINE MIR 65 153 -55 199 290 50 10 chr4 15388916 15389016 -186939331 - MIR SINE MIR -11 251 148 190 244 90 26 chr4 15389000 15389078 -186939269 + MIR SINE MIR 174 256 -6 * 199 162 27 0 chr4 15389205 15389242 -186939105 - MIR3 SINE MIR -9 199 162 6864 17 0 0 chr4 15389407 15390187 -186938160 + L1PA3 LINE L1 5376 6155 0 313 85 0 0 chr4 15390791 15390838 -186937509 + MADE1 DNA Mariner 34 80 0 1927 166 19 25 chr4 15391983 15392350 -186935997 - MLT1A1 LTR MaLR 0 365 1 356 292 13 49 chr4 15392626 15392827 -186935520 - MIR SINE MIR -58 150 7 381 22 0 0 chr4 15392880 15392926 -186935421 + (CA)n Simple_repeat Simple_repeat 1 46 0 294 344 0 21 chr4 15393072 15393168 -186935179 - MIR SINE MIR -149 113 20 352 275 50 8 chr4 15393707 15393827 -186934520 + L1ME1 LINE L1 308 432 -5991 3278 260 79 44 chr4 15394045 15397835 -186930512 + L1ME1 LINE L1 655 4589 -2352 383 156 16 0 chr4 15397836 15397900 -186930447 + MLT1D LTR MaLR 1 65 -440 255 153 92 0 chr4 15397900 15397998 -186930349 + (TA)n Simple_repeat Simple_repeat 1 107 0 1256 243 44 28 chr4 15398065 15398452 -186929895 + MLT1D LTR MaLR 113 505 0 775 203 7 0 chr4 15398453 15398601 -186929746 - HERVL74 LTR ERVL -3919 1766 1618 2361 228 103 15 chr4 15398710 15400081 -186928266 + L1ME1 LINE L1 5464 6954 -7 388 226 24 0 chr4 15400234 15400318 -186928029 + L3 LINE CR1 1232 1317 -260 961 227 58 18 chr4 15402048 15402273 -186926074 + MIR SINE MIR 28 261 -1 191 88 29 0 chr4 15402422 15402456 -186925891 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 388 295 165 19 chr4 15402641 15402809 -186925538 + MIR SINE MIR 11 191 -22 378 0 0 0 chr4 15403178 15403220 -186925127 + (TC)n Simple_repeat Simple_repeat 1 42 0 236 233 67 0 chr4 15403246 15403306 -186925041 - L2 LINE L2 0 3272 3209 657 227 97 3 chr4 15403842 15404071 -186924276 - MIR SINE MIR -6 256 7 267 293 8 119 chr4 15404155 15404408 -186923939 + L2 LINE L2 2272 2496 -818 1293 318 16 11 chr4 15404528 15404908 -186923439 + L2 LINE L2 2075 2456 -858 * 1624 261 14 31 chr4 15404897 15405322 -186923025 + L2 LINE L2 2896 3313 0 229 266 71 112 chr4 15405364 15405533 -186922814 + L2 LINE L2 2922 3083 -189 1906 223 69 42 chr4 15406301 15406852 -186921495 + L2 LINE L2 2175 2740 -574 2066 164 180 0 chr4 15406885 15407323 -186921024 + MLT2B1 LTR ERVL 1 517 -3 2857 166 55 24 chr4 15407331 15407914 -186920433 - L1MB5 LINE L1 -13 6161 5561 1557 227 30 53 chr4 15407922 15408261 -186920086 + L2 LINE L2 2757 3076 -237 1929 199 38 0 chr4 15408261 15408633 -186919714 - MLT1B LTR MaLR -4 386 1 1557 227 30 53 chr4 15408633 15408862 -186919485 + L2 LINE L2 3076 3309 -4 345 308 30 30 chr4 15409283 15409416 -186918931 + MIR3 SINE MIR 44 176 -32 * 493 317 117 54 chr4 15409401 15410221 -186918126 + L2 LINE L2 2384 3253 -19 515 309 11 17 chr4 15410370 15410548 -186917799 - MIR SINE MIR -2 260 84 201 121 0 0 chr4 15410916 15410949 -186917398 + (TG)n Simple_repeat Simple_repeat 2 34 0 304 319 146 62 chr4 15411361 15411505 -186916842 - MER91A DNA MER1_type -39 157 2 384 322 65 73 chr4 15411510 15411864 -186916483 + L2 LINE L2 2877 3227 -45 192 237 0 0 chr4 15411893 15411931 -186916416 + L2 LINE L2 3216 3253 -19 15112 159 34 21 chr4 15512018 15512604 -186815743 + L1MA3 LINE L1 1841 2418 -5147 4123 120 25 73 chr4 15512604 15513038 -186815309 - LTR8 LTR ERV1 0 691 304 1689 94 0 0 chr4 15513038 15513251 -186815096 - AluSg/x SINE Alu -15 297 85 4123 120 25 73 chr4 15513251 15513542 -186814805 - LTR8 LTR ERV1 -387 304 1 15112 159 34 21 chr4 15513542 15517562 -186810785 + L1MA3 LINE L1 2418 6521 -1044 2441 63 10 3 chr4 15517562 15517864 -186810483 - AluY SINE Alu -7 304 1 15112 159 34 21 chr4 15517864 15518109 -186810238 + L1MA3 LINE L1 6521 6761 -804 845 132 0 0 chr4 15518112 15518226 -186810121 + AluJb SINE Alu 5 118 -194 387 0 0 0 chr4 15518232 15518275 -186810072 + (TAA)n Simple_repeat Simple_repeat 2 44 0 6693 101 13 9 chr4 15518276 15519249 -186809098 + L1MA3 LINE L1 6748 7724 0 765 212 5 26 chr4 15519256 15519449 -186808898 + LTR37A LTR ERV1 235 423 -3 274 284 40 0 chr4 15520035 15520109 -186808238 - MER20 DNA MER1_type -83 136 60 240 196 20 0 chr4 15520268 15520319 -186808028 + Charlie8 DNA MER1_type 2356 2407 -10 296 301 118 0 chr4 15520351 15520487 -186807860 - MIR SINE MIR -58 204 53 256 303 83 23 chr4 15521136 15521268 -186807079 - MIR SINE MIR -12 250 111 256 284 11 53 chr4 15521309 15521404 -186806943 - MIR SINE MIR -20 242 152 368 301 124 0 chr4 15521426 15521539 -186806808 - L2 LINE L2 -23 3249 3123 1730 193 107 21 chr4 15521610 15522040 -186806307 - MLT1C LTR MaLR 0 467 1 351 343 29 15 chr4 15522044 15522181 -186806166 - MIR SINE MIR -120 142 4 293 222 37 56 chr4 15522259 15522367 -186805980 - L2 LINE L2 0 3313 3208 313 236 179 0 chr4 15522455 15522595 -186805752 - L2 LINE L2 -266 3047 2883 2021 134 109 3 chr4 15523495 15523824 -186804523 - THE1B LTR MaLR 0 364 1 395 274 30 50 chr4 15524034 15524235 -186804112 + MIR SINE MIR 23 219 -43 292 184 238 54 chr4 15524973 15525120 -186803227 + LTR67 LTR ERVL 356 529 -28 396 178 52 44 chr4 15525345 15525480 -186802867 - MER96B DNA MER1_type? -238 179 44 237 293 81 16 chr4 15525538 15525661 -186802686 - L2 LINE L2 -1 3271 3141 482 242 0 8 chr4 15527321 15527441 -186800906 + L2 LINE L2 3195 3313 0 382 276 29 26 chr4 15527467 15527611 -186800736 + MIR SINE MIR 16 160 -62 1755 186 0 0 chr4 15527630 15527910 -186800437 + AluJb SINE Alu 1 280 -32 565 37 0 106 chr4 15527927 15528115 -186800232 + (GGA)n Simple_repeat Simple_repeat 3 170 0 211 119 71 0 chr4 15528117 15528159 -186800188 + GA-rich Low_complexity Low_complexity 2 46 0 241 315 73 45 chr4 15528258 15528436 -186799911 - L2 LINE L2 -5 3308 3126 203 314 137 33 chr4 15528509 15528662 -186799685 + MIR3 SINE MIR 32 200 -8 2000 139 45 12 chr4 15529018 15529355 -186798992 - MER7A DNA MER2_type 0 346 1 422 305 63 11 chr4 15529460 15529634 -186798713 + MIR SINE MIR 3 185 -77 324 309 163 17 chr4 15529988 15530166 -186798181 + MIR SINE MIR 5 208 -54 886 119 0 38 chr4 15530387 15530572 -186797775 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 231 247 97 11 chr4 15530931 15531024 -186797323 - MIR SINE MIR -62 200 100 22 0 0 0 chr4 15531089 15531111 -186797236 + AT_rich Low_complexity Low_complexity 1 22 0 1622 204 0 7 chr4 15531111 15531395 -186796952 - AluJo SINE Alu -30 282 1 311 372 9 0 chr4 15531702 15531815 -186796532 + MIR3 SINE MIR 9 122 -86 261 290 46 53 chr4 15532350 15532481 -186795866 - MIR3 SINE MIR -33 175 46 314 260 156 58 chr4 15533194 15533322 -186795025 + L2 LINE L2 2626 2740 -574 2171 152 98 0 chr4 15533322 15533710 -186794637 + MSTB LTR MaLR 1 426 0 314 260 156 58 chr4 15533710 15533889 -186794458 + L2 LINE L2 2740 2963 -351 184 277 60 24 chr4 15534044 15534127 -186794220 + L2 LINE L2 3142 3227 -45 307 257 20 47 chr4 15535328 15535476 -186792871 + L1ME4a LINE L1 5978 6121 0 491 273 96 43 chr4 15536423 15536610 -186791737 + MIR SINE MIR 48 244 -18 1366 146 55 49 chr4 15536744 15537052 -186791295 + AluJo SINE Alu 1 310 -2 974 276 166 18 chr4 15537554 15537989 -186790358 - L2 LINE L2 -1 3312 2814 1387 142 9 47 chr4 15539846 15540149 -186788198 + MLT1B LTR MaLR 1 345 -122 549 205 16 39 chr4 15540165 15540292 -186788055 - MER61D LTR ERV1 -17 484 361 535 167 167 0 chr4 15540890 15540998 -186787349 + MLT1B LTR MaLR 342 467 0 331 238 67 38 chr4 15540999 15541104 -186787243 - MIR SINE MIR -90 172 65 405 280 26 67 chr4 15541459 15541652 -186786695 - MIR SINE MIR -66 196 12 227 240 93 27 chr4 15541633 15541708 -186786639 - L2 LINE L2 -4 3268 3189 * 1452 160 27 0 chr4 15542496 15542759 -186785588 - L1MB5 LINE L1 0 6174 5905 571 243 40 7 chr4 15543052 15543200 -186785147 + MIR SINE MIR 80 232 -30 180 266 101 38 chr4 15543222 15543301 -186785046 - MIR SINE MIR -88 174 91 364 243 47 19 chr4 15543335 15543442 -186784905 - MIR SINE MIR -91 171 62 557 272 70 35 chr4 15544742 15544970 -186783377 - MIR SINE MIR -10 252 17 323 222 156 11 chr4 15546517 15546607 -186781740 - MIR SINE MIR -50 212 110 345 307 44 7 chr4 15546609 15546746 -186781601 - MLT1K LTR MaLR 0 588 447 201 200 67 0 chr4 15547255 15547300 -186781047 - L2 LINE L2 0 3313 3266 450 0 0 0 chr4 15547471 15547521 -186780826 + (CA)n Simple_repeat Simple_repeat 1 50 0 1685 178 0 29 chr4 15547758 15548073 -186780274 - AluJb SINE Alu -4 308 3 1759 126 0 60 chr4 15548788 15549143 -186779204 - AluSx SINE Alu 0 337 1 2208 104 0 3 chr4 15549590 15549899 -186778448 - AluSx SINE Alu -3 309 2 2022 224 143 15 chr4 15549923 15550656 -186777691 - L1M4 LINE L1 -1949 4197 3371 21 0 0 0 chr4 15551044 15551065 -186777282 + AT_rich Low_complexity Low_complexity 1 21 0 452 251 82 71 chr4 15551664 15551847 -186776500 - MLT1J LTR MaLR -49 462 278 373 250 35 42 chr4 15551868 15552012 -186776335 + MLT1A1 LTR MaLR 1 143 -222 * 594 199 8 69 chr4 15551990 15552121 -186776226 + MLT1A1 LTR MaLR 94 217 -157 737 225 47 12 chr4 15552807 15552976 -186775371 - MER45A DNA AcHobo 0 178 4 2271 215 53 55 chr4 15553465 15554010 -186774337 - MER77 LTR ERV1 -8 597 54 326 271 36 22 chr4 15554117 15554240 -186774107 - MIR SINE MIR -66 142 64 613 248 75 49 chr4 15555223 15555584 -186772763 - MLT1C LTR MaLR -96 371 5 292 279 67 29 chr4 15555585 15555689 -186772658 - L2 LINE L2 -28 3285 3178 2090 159 6 0 chr4 15555692 15556031 -186772316 + MER47A DNA MER2_type 1 341 -25 287 289 83 16 chr4 15556050 15556171 -186772176 - L2 LINE L2 -155 3158 3030 1541 138 54 4 chr4 15556336 15556596 -186771751 - MER47A DNA MER2_type -63 303 31 919 191 0 0 chr4 15556977 15557134 -186771213 - FRAM SINE Alu -5 161 5 1790 214 42 20 chr4 15557737 15558194 -186770153 + MLT1C LTR MaLR 1 467 0 1841 153 130 84 chr4 15559242 15559705 -186768642 - MER74A LTR ERVL -60 498 15 3510 186 60 3 chr4 15560889 15561583 -186766764 + L1MB8 LINE L1 5445 6178 0 3562 158 17 12 chr4 15561586 15562227 -186766120 + L1MC1 LINE L1 5677 6320 -13 1182 167 23 0 chr4 15562231 15562446 -186765901 + L1MA4 LINE L1 6035 6254 -46 4653 62 25 6 chr4 15562446 15563462 -186764885 + MER11A LTR ERVK 1 1266 0 252 106 0 0 chr4 15563462 15563509 -186764838 + L1MA4 LINE L1 6250 6296 -4 689 102 0 10 chr4 15563682 15563780 -186764567 + MER4A LTR ERV1 2 98 -566 1952 99 161 78 chr4 15563780 15564153 -186764194 + MER4A LTR ERV1 261 664 0 341 274 137 13 chr4 15564159 15564312 -186764035 - L1ME4a LINE L1 -254 5867 5696 218 354 0 0 chr4 15564357 15564439 -186763908 - MIR SINE MIR -10 252 171 1095 110 0 0 chr4 15564440 15564594 -186763753 + AluY SINE Alu 142 295 -16 488 329 25 6 chr4 15564604 15564765 -186763582 - MIR SINE MIR -89 173 10 354 313 61 38 chr4 15564794 15565107 -186763240 - L1ME4a LINE L1 -517 5604 5285 1913 125 0 4 chr4 15565184 15565465 -186762882 - AluSx SINE Alu -32 280 1 297 329 133 0 chr4 15566681 15566824 -186761523 + MIR SINE MIR 26 187 -75 346 222 118 19 chr4 15567025 15567146 -186761201 + MIR SINE MIR 4 124 -84 223 286 63 0 chr4 15567634 15567697 -186760650 + MIR SINE MIR 84 150 -112 2027 134 0 13 chr4 15568028 15568341 -186760006 - AluSx SINE Alu -3 309 1 249 164 73 18 chr4 15569371 15569426 -186758921 + MLT1K LTR MaLR 529 586 -2 189 299 65 56 chr4 15569534 15569641 -186758706 + L2 LINE L2 3161 3268 -4 367 319 44 19 chr4 15569724 15569930 -186758417 - MIR SINE MIR -57 205 1 46 78 0 0 chr4 15570940 15571042 -186757305 + AT_rich Low_complexity Low_complexity 1 102 0 353 274 112 27 chr4 15571171 15571494 -186756853 + L1ME4a LINE L1 5564 5993 -128 1921 115 0 14 chr4 15571506 15571794 -186756553 - L1PA14 LINE L1 -16 6145 5862 856 184 11 6 chr4 15572077 15572251 -186756096 + FRAM SINE Alu 1 167 -9 576 291 119 26 chr4 15572560 15572787 -186755560 + MIR SINE MIR 9 256 -6 2097 104 14 0 chr4 15572790 15573087 -186755260 + AluSx SINE Alu 1 301 -11 453 337 181 21 chr4 15573924 15574345 -186754002 + L2 LINE L2 2768 3259 -54 207 258 32 86 chr4 15574552 15574645 -186753702 + MIR SINE MIR 17 104 -104 211 189 113 0 chr4 15574805 15574858 -186753489 - MER5A DNA MER1_type -4 185 127 2342 68 0 0 chr4 15574862 15575154 -186753193 + AluSx SINE Alu 1 292 -20 680 228 15 0 chr4 15575168 15575304 -186753043 - MER5A DNA MER1_type -51 138 1 317 259 71 0 chr4 15575354 15575439 -186752908 - MIR SINE MIR -54 208 118 534 261 70 25 chr4 15575684 15575841 -186752506 + MIR SINE MIR 51 214 -48 313 219 82 0 chr4 15576318 15576391 -186751956 - L2 LINE L2 -1 3312 3234 703 238 117 70 chr4 15577756 15578188 -186750159 - MLT1J LTR MaLR -35 460 9 183 280 60 0 chr4 15578302 15578352 -186749995 - MIR3 SINE MIR -3 205 153 384 233 81 0 chr4 15578416 15578502 -186749845 + L2 LINE L2 3211 3303 -10 25 0 0 0 chr4 15580462 15580487 -186747860 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr4 15580983 15581016 -186747331 + AT_rich Low_complexity Low_complexity 1 33 0 455 266 8 8 chr4 15581934 15581979 -186746368 - L1MA10 LINE L1 -8 6326 6282 275 292 215 7 chr4 15581979 15582123 -186746224 - L1ME1 LINE L1 -44 6122 5949 837 142 8 22 chr4 15582392 15582526 -186745821 - FLAM_C SINE Alu -10 133 2 2458 57 0 0 chr4 15583082 15583380 -186744967 + AluY SINE Alu 1 298 -13 774 318 148 19 chr4 15583469 15584194 -186744153 + L2 LINE L2 2421 3248 -65 2328 92 7 0 chr4 15584780 15585084 -186743263 - AluSg SINE Alu -4 306 1 290 253 27 11 chr4 15585365 15585538 -186742809 + MIR SINE MIR 21 262 0 511 217 103 75 chr4 15585551 15585832 -186742515 - L1ME1 LINE L1 -247 5874 5586 1821 152 17 0 chr4 15585909 15586198 -186742149 - AluJo SINE Alu -13 299 6 232 306 173 33 chr4 15586243 15586579 -186741768 + L2 LINE L2 2853 3235 -78 231 206 110 41 chr4 15587552 15587625 -186740722 - L2 LINE L2 -9 3263 3186 200 202 173 19 chr4 15587888 15587992 -186740355 + L2 LINE L2 3096 3215 -98 2194 109 3 0 chr4 15590602 15590918 -186737429 - AluSq SINE Alu 0 317 1 419 161 0 0 chr4 15590995 15591057 -186737290 - AluSc SINE Alu -116 193 132 1062 74 0 0 chr4 15591208 15591343 -186737004 - AluY SINE Alu -7 304 170 556 272 185 4 chr4 15591438 15591681 -186736666 - L1ME LINE L1 -318 5803 5517 21 36 0 0 chr4 15592591 15592619 -186735728 + AT_rich Low_complexity Low_complexity 1 28 0 31 58 0 0 chr4 15592832 15592884 -186735463 + AT_rich Low_complexity Low_complexity 1 52 0 25 0 0 0 chr4 15593543 15593568 -186734779 + AT_rich Low_complexity Low_complexity 1 25 0 2035 102 60 0 chr4 15594223 15594506 -186733841 + AluSx SINE Alu 1 300 -12 290 303 81 0 chr4 15594508 15594607 -186733740 - L2 LINE L2 -14 3299 3193 1000 180 40 0 chr4 15594845 15595073 -186733274 + L1MA4 LINE L1 6060 6296 -4 283 212 61 30 chr4 15595314 15595380 -186732967 + MIR SINE MIR 34 101 -107 286 299 118 16 chr4 15595408 15595535 -186732812 + MIR SINE MIR 93 232 -30 260 293 49 0 chr4 15596422 15596504 -186731843 + L2 LINE L2 3187 3272 0 1854 131 36 67 chr4 15596874 15597233 -186731114 - MER7A DNA MER2_type 0 346 1 225 0 0 0 chr4 15597551 15597594 -186730753 + (TG)n Simple_repeat Simple_repeat 1 68 0 225 0 0 0 chr4 15597594 15597619 -186730728 + (TG)n Simple_repeat Simple_repeat 2 26 0 1951 97 87 17 chr4 15599369 15599657 -186728690 - AluSx SINE Alu -4 308 1 2709 225 88 20 chr4 15601825 15602997 -186725350 - L1ME2 LINE L1 -13 6151 4901 701 145 176 57 chr4 15602997 15603160 -186725187 + Charlie1 DNA MER1_type 2508 2707 -54 2237 107 0 0 chr4 15603160 15603458 -186724889 - AluSq SINE Alu -15 298 1 701 145 176 57 chr4 15603458 15603521 -186724826 + Charlie1 DNA MER1_type 2707 2761 0 387 299 21 42 chr4 15603666 15603810 -186724537 - Charlie1a DNA MER1_type -1298 157 17 335 288 101 22 chr4 15603934 15604073 -186724274 + MIR SINE MIR 20 169 -93 320 259 62 0 chr4 15604928 15605009 -186723338 + L2 LINE L2 3227 3312 -1 2422 64 7 0 chr4 15606558 15606856 -186721491 + AluY SINE Alu 1 300 -11 550 276 182 30 chr4 15607119 15607383 -186720964 + L2 LINE L2 3008 3311 -2 * 626 255 95 45 chr4 15607378 15607621 -186720726 - MIR SINE MIR 0 262 8 2149 106 3 3 chr4 15608258 15608559 -186719788 - AluSx SINE Alu -11 301 1 314 200 106 0 chr4 15609034 15609119 -186719228 + MER5A DNA MER1_type 13 106 -83 1125 282 131 4 chr4 15609811 15610315 -186718032 - L1MC4a LINE L1 -1885 5923 5356 534 261 118 49 chr4 15612175 15612378 -186715969 - MIR SINE MIR -26 236 20 360 0 0 0 chr4 15612780 15612820 -186715527 + (TTC)n Simple_repeat Simple_repeat 2 41 0 1056 69 0 0 chr4 15612822 15612952 -186715395 - AluSq/x SINE Alu -179 133 4 1898 129 14 11 chr4 15617522 15617809 -186710538 - AluJo SINE Alu -18 294 7 1789 177 3 10 chr4 15618251 15618550 -186709797 - AluJb SINE Alu -14 298 2 31 0 0 0 chr4 15619279 15619310 -186709037 + AT_rich Low_complexity Low_complexity 1 31 0 232 351 91 6 chr4 15619655 15619820 -186708527 - MIR SINE MIR -24 238 60 23 33 0 0 chr4 15620215 15620245 -186708102 + AT_rich Low_complexity Low_complexity 1 30 0 456 140 150 40 chr4 15621297 15621397 -186706950 + MLT1L LTR MaLR 2 112 -278 1945 142 31 3 chr4 15621406 15621731 -186706616 + MLT1B LTR MaLR 57 390 0 21 36 0 0 chr4 15622348 15622376 -186705971 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr4 15625965 15626008 -186702339 + AT_rich Low_complexity Low_complexity 1 43 0 227 214 0 0 chr4 15626151 15626193 -186702154 + LTR67 LTR ERVL 97 138 -419 * 744 279 109 30 chr4 15626170 15626578 -186701769 + MLT1L LTR MaLR 74 607 -8 1321 174 0 0 chr4 15626666 15626873 -186701474 - AluJb SINE Alu -23 289 83 340 336 26 0 chr4 15627541 15627654 -186700693 + MIR SINE MIR 147 262 0 228 227 93 53 chr4 15627932 15628007 -186700340 - LTR13 LTR ERVK -271 736 659 501 331 0 0 chr4 15628351 15628487 -186699860 - MIR SINE MIR -125 137 2 21 0 0 0 chr4 15628890 15628911 -186699436 + AT_rich Low_complexity Low_complexity 1 21 0 384 281 92 0 chr4 15629470 15629623 -186698724 + MER112 DNA MER1_type 63 229 -31 2038 110 10 13 chr4 15632799 15633098 -186695249 + AluSg SINE Alu 1 298 -12 409 345 148 18 chr4 15634218 15634774 -186693573 + L2 LINE L2 2232 2859 -455 228 314 202 40 chr4 15634847 15635095 -186693252 + L2 LINE L2 2976 3263 -9 2109 110 3 7 chr4 15635910 15636202 -186692145 + AluSq SINE Alu 1 291 -22 720 219 49 12 chr4 15636866 15637030 -186691317 - MIR SINE MIR -81 181 12 356 237 152 56 chr4 15637463 15637676 -186690671 - MIR3 SINE MIR -33 229 20 279 196 0 0 chr4 15637920 15637966 -186690381 - Alu SINE Alu -256 46 1 1914 102 7 46 chr4 15638054 15638359 -186689988 - AluSx SINE Alu -19 293 1 394 262 133 119 chr4 15643003 15643487 -186684860 + L1M2 LINE L1 574 1050 -5799 216 0 0 0 chr4 15643487 15643511 -186684836 + (CCG)n Simple_repeat Simple_repeat 2 25 0 394 262 133 119 chr4 15643511 15643563 -186684784 + L1M2 LINE L1 1050 1100 -5749 195 42 0 0 chr4 15643563 15643587 -186684760 + (CCG)n Simple_repeat Simple_repeat 2 25 0 394 262 133 119 chr4 15643587 15643825 -186684522 + L1M2 LINE L1 1100 1360 -5489 28 0 0 0 chr4 15643922 15643950 -186684397 + GC_rich Low_complexity Low_complexity 1 28 0 2398 73 0 16 chr4 15645314 15645629 -186682718 + AluSg SINE Alu 1 310 0 2151 105 0 16 chr4 15645954 15646269 -186682078 + AluSg SINE Alu 1 310 0 267 31 0 0 chr4 15646295 15646327 -186682020 + (A)n Simple_repeat Simple_repeat 1 32 0 198 301 34 62 chr4 15647618 15647764 -186680583 + MIR SINE MIR 4 145 -117 242 241 145 62 chr4 15647982 15648127 -186680220 + MIR3 SINE MIR 37 193 -15 209 0 98 0 chr4 15650890 15650931 -186677416 + (TAATG)n Simple_repeat Simple_repeat 1 45 0 204 256 275 25 chr4 15651451 15651611 -186676736 + MIR3 SINE MIR 2 201 -7 241 370 84 33 chr4 15651758 15652117 -186676230 - L2 LINE L2 -6 3266 2890 381 240 190 0 chr4 15653567 15653688 -186674659 + MIR SINE MIR 51 194 -68 235 323 55 92 chr4 15653690 15653854 -186674493 - L2 LINE L2 0 3272 3115 249 325 86 60 chr4 15654094 15654491 -186673856 - L2 LINE L2 -584 2730 2324 372 262 271 21 chr4 15655163 15655499 -186672848 - L2 LINE L2 -985 2329 1910 251 371 57 0 chr4 15656345 15656450 -186671897 - L2 LINE L2 -20 3252 3142 2557 106 19 33 chr4 15658389 15658757 -186669590 + THE1B LTR MaLR 1 363 -1 304 159 48 0 chr4 15658811 15658874 -186669473 - L1MC4a LINE L1 -1781 6027 5962 325 0 44 0 chr4 15658874 15658919 -186669428 + (TA)n Simple_repeat Simple_repeat 2 48 0 883 250 37 16 chr4 15659148 15659392 -186668955 - L1MC4a LINE L1 -1883 5925 5677 273 326 20 10 chr4 15660550 15660730 -186667617 + MER93b-int LTR ERV1 6579 6655 -146 453 220 34 14 chr4 15661063 15661205 -186667142 + MER93b LTR ERV1 61 214 -188 1211 180 3 95 chr4 15661222 15661516 -186666831 - AluJo SINE Alu -16 296 30 744 189 31 19 chr4 15661520 15661679 -186666668 + MER93a LTR ERV1 242 402 0 1671 172 31 3 chr4 15661809 15662099 -186666248 - AluJb SINE Alu -14 298 1 3373 85 21 7 chr4 15662533 15662970 -186665377 - MLT2A1 LTR ERVL -1 443 1 577 290 70 14 chr4 15663281 15663495 -186664852 + MIR SINE MIR 37 262 0 211 292 67 50 chr4 15663737 15663857 -186664490 + L2 LINE L2 2943 3064 -208 2267 107 0 0 chr4 15664264 15664590 -186663757 - AluSx SINE Alu 0 326 1 968 230 64 55 chr4 15664914 15665275 -186663072 - LTR16A1 LTR ERVL 0 457 94 280 361 161 4 chr4 15667348 15667578 -186660769 - L2 LINE L2 -562 2752 2487 245 363 50 61 chr4 15668601 15668853 -186659494 + L2 LINE L2 1851 2099 -1215 2561 59 0 0 chr4 15668853 15669157 -186659190 - AluY SINE Alu -7 304 1 245 363 50 61 chr4 15669157 15669281 -186659066 + L2 LINE L2 2099 2223 -1091 209 169 13 52 chr4 15669459 15669536 -186658811 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 230 315 22 22 chr4 15669557 15669649 -186658698 + MER5B DNA MER1_type 57 148 -30 698 140 9 0 chr4 15669661 15669768 -186658579 - L1PB1 LINE L1 -5 6146 6039 411 372 36 65 chr4 15669817 15670294 -186658053 + L2 LINE L2 2777 3243 -29 1418 305 143 11 chr4 15670401 15671329 -186657018 + L2 LINE L2 2232 3311 -2 2033 120 0 33 chr4 15672445 15672769 -186655578 - AluSq SINE Alu 0 313 1 26 0 0 0 chr4 15673137 15673163 -186655184 + AT_rich Low_complexity Low_complexity 1 26 0 2083 156 140 8 chr4 15673179 15673557 -186654790 - MSTA LTR MaLR 0 428 1 2890 229 25 21 chr4 15674419 15675452 -186652895 - L1PA15-16 LINE L1 -3117 3732 2694 2133 169 0 3 chr4 15675471 15675808 -186652539 + MER75 DNA T2_type 6 341 -173 25 0 0 0 chr4 15676106 15676131 -186652216 + AT_rich Low_complexity Low_complexity 1 25 0 238 364 93 0 chr4 15677288 15677428 -186650919 + MIR SINE MIR 108 260 -2 489 363 28 4 chr4 15677445 15677696 -186650651 - MIR SINE MIR 0 262 6 370 302 251 15 chr4 15679760 15680091 -186648256 - MLT1I LTR MaLR 0 409 1 30 45 0 0 chr4 15680108 15680152 -186648195 + AT_rich Low_complexity Low_complexity 1 44 0 1683 246 197 3 chr4 15680783 15681347 -186647000 - L1M3e LINE L1 -5297 1733 1061 31 26 0 0 chr4 15681810 15681848 -186646499 + AT_rich Low_complexity Low_complexity 1 38 0 1898 192 97 8 chr4 15682299 15682690 -186645657 - MSTA LTR MaLR 0 428 3 2362 191 62 42 chr4 15682692 15683211 -186645136 - MSTA-int LTR MaLR 0 1651 1123 1148 50 0 0 chr4 15683558 15683697 -186644650 + MER85 DNA T2_type 1 139 0 219 195 274 71 chr4 15684906 15684985 -186643362 + MIR SINE MIR 117 179 -83 996 173 85 122 chr4 15684985 15685361 -186642986 - MLT1A1 LTR MaLR 0 365 4 219 195 274 71 chr4 15685361 15685394 -186642953 + MIR SINE MIR 179 252 -10 32 43 0 0 chr4 15685617 15685663 -186642684 + AT_rich Low_complexity Low_complexity 1 46 0 187 262 66 16 chr4 15685998 15686059 -186642288 - MIR SINE MIR -72 190 127 5964 108 3 21 chr4 15686501 15686985 -186641362 - THE1-int LTR MaLR -737 843 379 1763 135 0 4 chr4 15686985 15687237 -186641110 + AluSc SINE Alu 50 300 -9 5964 108 3 21 chr4 15687237 15687606 -186640741 - THE1-int LTR MaLR -1201 379 5 2127 107 72 9 chr4 15687609 15687928 -186640419 - MLT2A2 LTR ERVL -5 448 110 392 288 22 84 chr4 15688269 15688495 -186639852 + MIR SINE MIR 30 241 -21 1774 214 80 78 chr4 15689819 15690272 -186638075 - L1MC/D LINE L1 -743 5403 4953 1851 179 0 10 chr4 15690272 15690585 -186637762 + AluJb SINE Alu 3 312 0 1774 214 80 78 chr4 15690585 15691293 -186637054 - L1MC/D LINE L1 -1193 4953 4404 2214 96 6 13 chr4 15691425 15691738 -186636609 + AluY SINE Alu 1 311 0 1005 142 25 0 chr4 15693137 15693299 -186635048 + L1M1 LINE L1 22 187 -7378 332 320 118 55 chr4 15693477 15693858 -186634489 + L2 LINE L2 2898 3302 -11 282 361 83 25 chr4 15693947 15694271 -186634076 + L2 LINE L2 1072 1414 -1900 238 258 62 102 chr4 15694742 15694870 -186633477 - MIR3 SINE MIR -24 184 62 448 164 0 14 chr4 15694932 15695005 -186633342 - FRAM/FAM SINE Alu -110 66 1 7913 67 3 9 chr4 15695255 15696230 -186632117 + LTR5 LTR ERVK 1 969 0 238 329 0 0 chr4 15696794 15696873 -186631474 + L2 LINE L2 3184 3262 -10 2704 187 29 9 chr4 15698274 15699781 -186628566 - L1M1 LINE L1 -5910 1655 16 310 198 74 0 chr4 15699793 15699874 -186628473 - LTR37B LTR ERV1 -184 284 198 305 227 280 67 chr4 15700286 15700436 -186627911 - MIR SINE MIR 0 262 81 257 310 78 7 chr4 15700450 15700592 -186627755 + L2 LINE L2 3162 3313 0 188 188 42 0 chr4 15701922 15701970 -186626377 + CT-rich Low_complexity Low_complexity 2 51 0 216 292 106 9 chr4 15702249 15702362 -186625985 - MIR SINE MIR -66 142 19 428 283 116 5 chr4 15702843 15703041 -186625306 + MIR SINE MIR 36 255 -7 659 160 8 0 chr4 15703077 15703196 -186625151 - L1MA3 LINE L1 -5 6300 6181 9999 146 18 5 chr4 15703196 15705363 -186622984 - L1 LINE L1 -3317 4248 2049 3909 256 80 62 chr4 15705365 15706490 -186621857 - L1 LINE L1 -6410 1155 11 297 264 118 27 chr4 15706529 15706639 -186621708 - MIR SINE MIR -89 173 54 1502 131 278 18 chr4 15706814 15707149 -186621198 - MSTA LTR MaLR -2 426 5 209 283 0 33 chr4 15707373 15707433 -186620914 - L2 LINE L2 -4 3268 3211 324 64 0 0 chr4 15707781 15707828 -186620519 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 183 80 0 0 chr4 15708774 15708799 -186619548 + (TGGGGG)n Simple_repeat Simple_repeat 1 25 0 288 263 26 0 chr4 15709476 15709552 -186618795 - MER116 DNA Mariner 0 80 3 2628 37 16 0 chr4 15710187 15710510 -186617837 - L1P LINE L1 -924 5222 4895 1790 55 0 0 chr4 15710510 15710723 -186617624 + L1PA5 LINE L1 5928 6147 -7 303 93 0 0 chr4 15710723 15710766 -186617581 + (TA)n Simple_repeat Simple_repeat 2 44 0 377 180 205 16 chr4 15711319 15711441 -186616906 + MIR SINE MIR 112 256 -6 1794 91 8 0 chr4 15713478 15713732 -186614615 - L1MA2 LINE L1 -1 6303 6048 1446 207 18 84 chr4 15714751 15715142 -186613205 - MLT1A2 LTR MaLR 0 374 10 193 344 10 10 chr4 15715516 15715612 -186612735 + MIR SINE MIR 48 143 -119 569 163 155 72 chr4 15715994 15716277 -186612070 + LTR54B LTR ERV1 1 300 -210 599 179 0 17 chr4 15716278 15716395 -186611952 + MER57A-int LTR ERV1 7412 7526 -11 2048 165 29 63 chr4 15716440 15716853 -186611494 + MER57A LTR ERV1 5 403 0 215 216 72 82 chr4 15716884 15716981 -186611366 - MIR SINE MIR -99 163 68 2246 125 0 6 chr4 15717307 15717620 -186610727 - AluSx SINE Alu 0 312 2 2682 163 24 24 chr4 15717856 15718359 -186609988 - LTR54 LTR ERV1 -5 505 3 534 219 73 0 chr4 15719102 15719239 -186609108 - MIR SINE MIR -85 177 31 193 300 42 50 chr4 15719236 15719356 -186608991 - MIR SINE MIR -97 165 47 * 624 268 38 38 chr4 15720039 15720252 -186608095 + MIR SINE MIR 29 241 -21 1328 239 104 19 chr4 15720361 15720783 -186607564 - MLT1C LTR MaLR -2 465 8 218 337 24 0 chr4 15720831 15720914 -186607433 - MIR SINE MIR -144 118 34 250 317 114 0 chr4 15721120 15721243 -186607104 - L2 LINE L2 -189 3083 2947 506 163 0 20 chr4 15721559 15721657 -186606690 + MER5A DNA MER1_type 11 106 -83 1911 108 0 0 chr4 15721657 15721931 -186606416 - AluSq SINE Alu 0 306 33 30 0 0 0 chr4 15721944 15721974 -186606373 + AT_rich Low_complexity Low_complexity 1 30 0 2011 222 92 25 chr4 15721974 15722541 -186605806 - L1ME3A LINE L1 -12 6158 5554 1844 218 67 82 chr4 15722561 15722970 -186605377 - L1MC5 LINE L1 -44 7917 7522 2079 118 7 0 chr4 15722970 15723258 -186605089 - AluSx SINE Alu -22 290 1 1844 218 67 82 chr4 15723258 15723596 -186604751 - L1MC5 LINE L1 -439 7522 7181 285 212 45 0 chr4 15723665 15723731 -186604616 - L1ME4a LINE L1 -209 5912 5844 1807 176 143 14 chr4 15724201 15724383 -186603964 + MLT1C LTR MaLR 1 158 -309 2542 52 3 3 chr4 15724383 15724690 -186603657 + AluY SINE Alu 1 307 -4 1807 176 143 14 chr4 15724690 15724921 -186603426 + MLT1C LTR MaLR 158 467 0 186 228 193 0 chr4 15725895 15725952 -186602395 - L2 LINE L2 0 3313 3246 1627 114 4 21 chr4 15726027 15726264 -186602083 + AluJb SINE Alu 67 299 -13 476 267 136 100 chr4 15726389 15726896 -186601451 - L1MC4a LINE L1 -1675 6133 5601 1644 152 4 4 chr4 15726896 15727153 -186601194 - AluJo SINE Alu -55 257 1 476 267 136 100 chr4 15727153 15727226 -186601121 - L1MC4a LINE L1 -2207 5601 5532 409 277 8 23 chr4 15727275 15727405 -186600942 - MIR SINE MIR -115 147 20 402 289 114 9 chr4 15727736 15727909 -186600438 - L1MC4a LINE L1 -3006 3140 2936 1832 128 4 0 chr4 15727909 15728167 -186600180 - AluSx SINE Alu -11 301 43 402 289 114 9 chr4 15728167 15728221 -186600126 - L1MC4a LINE L1 -3210 2936 2889 491 219 19 1 chr4 15730069 15730186 -186598161 - MIR SINE MIR -61 147 38 597 216 22 30 chr4 15730186 15730320 -186598027 + MER94 DNA DNA 1 133 -1 2027 144 3 0 chr4 15730587 15730885 -186597462 - AluSx SINE Alu -13 299 1 525 207 212 43 chr4 15731116 15731343 -186597004 - L1MC4a LINE L1 -400 7460 7174 1868 166 0 13 chr4 15731343 15731645 -186596702 + AluJb SINE Alu 2 299 -13 525 207 212 43 chr4 15731645 15731718 -186596629 - L1MC4a LINE L1 -686 7174 7115 435 222 10 0 chr4 15732731 15732832 -186595515 - MIR SINE MIR -68 140 34 411 351 75 41 chr4 15732838 15733225 -186595122 + L2 LINE L2 2824 3223 -49 2344 108 12 122 chr4 15733293 15733467 -186594880 + HSMAR2 DNA Mariner 2 193 -1109 1866 168 0 7 chr4 15733467 15733765 -186594582 + AluJb SINE Alu 1 296 -16 2344 108 12 122 chr4 15733765 15733851 -186594496 + HSMAR2 DNA Mariner 193 287 -1015 2362 72 7 0 chr4 15733851 15734142 -186594205 - AluSg SINE Alu -17 293 1 2344 108 12 122 chr4 15734142 15734363 -186593984 + HSMAR2 DNA Mariner 287 431 -871 28 61 0 0 chr4 15734363 15734412 -186593935 + AT_rich Low_complexity Low_complexity 1 49 0 32 43 0 0 chr4 15734636 15734682 -186593665 + AT_rich Low_complexity Low_complexity 1 46 0 429 213 11 11 chr4 15736434 15736528 -186591819 + MLT2C1 LTR ERVL 29 122 -275 2050 129 14 14 chr4 15736619 15736913 -186591434 + AluSx SINE Alu 2 295 -17 1388 139 52 36 chr4 15736918 15737170 -186591177 + MLT2C1 LTR ERVL 142 397 0 922 301 86 10 chr4 15738592 15738978 -186589369 - MLT1J2 LTR MaLR 0 450 36 194 265 0 0 chr4 15739113 15739147 -186589200 - L2 LINE L2 -29 3243 3210 870 154 122 0 chr4 15740657 15740813 -186587534 + FRAM SINE Alu 1 172 -4 3883 173 45 48 chr4 15740956 15741531 -186586816 - Charlie1a DNA MER1_type -1326 1435 863 868 231 0 0 chr4 15741531 15741691 -186586656 - L1PB4 LINE L1 -7 6149 5990 3883 173 45 48 chr4 15741691 15742008 -186586339 - Charlie1a DNA MER1_type -1898 863 546 1261 179 4 45 chr4 15742010 15742256 -186586091 + AluJo SINE Alu 1 236 -76 227 214 0 0 chr4 15742274 15742316 -186586031 - Charlie1a DNA MER1_type -918 537 496 198 0 0 0 chr4 15742316 15742338 -186586009 + (TA)n Simple_repeat Simple_repeat 2 23 0 943 198 153 36 chr4 15742439 15742687 -186585660 - AluJo SINE Alu -35 277 1 1812 221 119 7 chr4 15742695 15743142 -186585205 - Charlie1a DNA MER1_type -958 497 1 204 81 0 54 chr4 15743246 15743283 -186585064 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 255 303 154 53 chr4 15743395 15743583 -186584764 - MIR SINE MIR 0 262 56 1934 112 0 0 chr4 15744468 15744726 -186583621 - AluSx SINE Alu -54 258 1 2217 96 0 0 chr4 15745481 15745789 -186582558 + AluSg SINE Alu 1 308 0 318 250 0 0 chr4 15745983 15746055 -186582292 - L1M4 LINE L1 -2461 3685 3614 2222 85 4 0 chr4 15746161 15746468 -186581879 + AluY SINE Alu 1 308 0 376 181 60 0 chr4 15748104 15748187 -186580160 - LTR16C LTR ERVL 0 491 404 187 289 21 62 chr4 15748187 15748284 -186580063 + MER5A DNA MER1_type 69 161 -28 205 311 14 14 chr4 15748645 15748719 -186579628 - L2 LINE L2 -555 2759 2686 289 308 0 56 chr4 15749886 15750029 -186578318 - MIR SINE MIR -5 257 123 250 295 47 39 chr4 15750431 15750560 -186577787 - MIR SINE MIR -11 251 122 226 264 14 0 chr4 15750921 15750993 -186577354 - LTR66 LTR ERVL -159 451 379 1730 98 150 11 chr4 15751013 15751279 -186577068 + AluSg1 SINE Alu 1 303 -6 233 233 11 0 chr4 15753178 15753268 -186575079 + CT-rich Low_complexity Low_complexity 2 92 0 2178 118 0 0 chr4 15753801 15754098 -186574249 - AluSx SINE Alu -15 297 1 466 252 25 0 chr4 15756409 15756528 -186571819 + Charlie8 DNA MER1_type 46 167 -2250 763 216 0 8 chr4 15756758 15756892 -186571455 - FLAM_A SINE Alu 0 133 1 243 0 0 0 chr4 15757602 15757629 -186570718 + (TG)n Simple_repeat Simple_repeat 2 28 0 313 393 22 7 chr4 15757947 15758082 -186570265 - MIR3 SINE MIR -48 160 24 355 229 101 9 chr4 15758915 15759024 -186569323 - L1ME3A LINE L1 -171 5999 5881 285 29 0 0 chr4 15759186 15759220 -186569127 + (TG)n Simple_repeat Simple_repeat 2 35 0 279 140 0 0 chr4 15760199 15760249 -186568098 + (CA)n Simple_repeat Simple_repeat 1 50 0 610 182 55 79 chr4 15761037 15761202 -186567145 + MER20 DNA MER1_type 2 162 -57 1017 193 11 21 chr4 15761833 15762020 -186566327 + MER58A DNA MER1_type 37 221 -3 216 273 18 0 chr4 15762634 15762689 -186565658 - MIR SINE MIR -55 153 98 514 189 8 8 chr4 15762744 15762866 -186565481 + CT-rich Low_complexity Low_complexity 3 124 0 647 152 203 19 chr4 15762922 15763080 -186565267 - MLT1B LTR MaLR -203 187 1 190 237 85 34 chr4 15763096 15763155 -186565192 - MIR SINE MIR -187 75 14 268 274 78 10 chr4 15764892 15764994 -186563353 - MIR SINE MIR -58 150 42 243 0 0 0 chr4 15765028 15765055 -186563292 + (TG)n Simple_repeat Simple_repeat 2 28 0 447 161 0 54 chr4 15765393 15765486 -186562861 - Tigger5 DNA MER2_type -1 2322 2235 * 1237 180 48 26 chr4 15765479 15765707 -186562640 - Tigger5 DNA MER2_type -2090 233 1 452 279 57 8 chr4 15765832 15765954 -186562393 - MIR SINE MIR -128 134 7 21 0 0 0 chr4 15766900 15766921 -186561426 + AT_rich Low_complexity Low_complexity 1 21 0 2198 110 0 3 chr4 15767095 15767386 -186560961 - AluSx SINE Alu -20 292 3 1592 213 74 98 chr4 15767581 15768256 -186560091 - L1MC4 LINE L1 0 8042 7384 280 308 72 117 chr4 15769075 15769211 -186559136 + L2 LINE L2 2852 2992 -280 2047 130 0 0 chr4 15769211 15769519 -186558828 - AluSx SINE Alu 0 308 1 280 308 72 117 chr4 15769519 15769551 -186558796 + L2 LINE L2 2992 3024 -248 2409 103 0 0 chr4 15769551 15769863 -186558484 - AluSx SINE Alu 0 312 1 280 308 72 117 chr4 15769863 15770078 -186558269 + L2 LINE L2 3024 3220 -52 829 110 87 0 chr4 15770242 15770369 -186557978 - MER85 DNA T2_type 0 139 2 290 262 9 93 chr4 15770428 15770535 -186557812 + MIR3 SINE MIR 90 187 -21 857 211 77 29 chr4 15771076 15771285 -186557062 - MER20 DNA MER1_type 0 219 1 2605 61 0 3 chr4 15772028 15772338 -186556009 - AluY SINE Alu -2 309 1 2268 93 33 0 chr4 15772630 15772932 -186555415 + AluSx SINE Alu 1 312 0 239 143 102 0 chr4 15773528 15773577 -186554770 - L2 LINE L2 -12 3301 3248 1710 125 61 51 chr4 15774126 15774421 -186553926 + AluJb SINE Alu 1 298 -14 2121 110 30 13 chr4 15774969 15775269 -186553078 - AluSx SINE Alu -7 305 1 23 0 0 0 chr4 15775293 15775316 -186553031 + AT_rich Low_complexity Low_complexity 1 23 0 426 291 155 24 chr4 15775328 15775541 -186552806 + MIR SINE MIR 19 259 -3 621 147 0 78 chr4 15776139 15776255 -186552092 + U6 snRNA snRNA 1 107 0 449 322 101 0 chr4 15776822 15777021 -186551326 - MIR SINE MIR -8 254 36 237 65 0 0 chr4 15778725 15778756 -186549591 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 423 0 0 0 chr4 15779384 15779431 -186548916 + (CA)n Simple_repeat Simple_repeat 1 47 0 2237 104 7 3 chr4 15779666 15779963 -186548384 + AluSx SINE Alu 3 300 -12 534 208 20 7 chr4 15779972 15780121 -186548226 + GA-rich Low_complexity Low_complexity 4 154 0 355 64 0 0 chr4 15780249 15780296 -186548051 + MADE1 DNA Mariner 1 47 -33 757 181 16 0 chr4 15781131 15781258 -186547089 - FLAM_C SINE Alu -4 129 1 604 324 8 19 chr4 15781486 15781745 -186546602 + L1ME LINE L1 5563 5818 -303 448 248 0 58 chr4 15781848 15781969 -186546378 - MER58C DNA MER1_type 0 215 102 746 308 173 45 chr4 15782543 15783974 -186544373 + L2 LINE L2 1146 2759 -555 2376 61 0 0 chr4 15785441 15785737 -186542610 - AluY SINE Alu -15 296 1 1827 109 13 60 chr4 15785902 15786204 -186542143 + AluSx SINE Alu 6 293 -19 21 0 0 0 chr4 15786362 15786383 -186541964 + AT_rich Low_complexity Low_complexity 1 21 0 293 273 171 11 chr4 15786946 15787133 -186541214 + MIR SINE MIR 32 248 -14 1913 140 3 16 chr4 15787162 15787470 -186540877 + AluSx SINE Alu 1 304 -8 277 163 0 25 chr4 15787597 15787677 -186540670 + (TA)n Simple_repeat Simple_repeat 2 79 0 297 0 0 0 chr4 15788381 15788414 -186539933 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2124 96 3 0 chr4 15788416 15788698 -186539649 - AluSx SINE Alu -29 283 1 263 297 58 43 chr4 15788787 15788925 -186539422 - MIR SINE MIR -22 240 101 260 339 60 48 chr4 15789115 15789283 -186539064 - L2 LINE L2 -182 3090 2921 723 185 0 0 chr4 15789485 15789631 -186538716 + CT-rich Low_complexity Low_complexity 1 146 0 270 310 62 0 chr4 15789764 15789877 -186538470 - MER117 DNA MER1_type -37 160 41 483 188 116 0 chr4 15791014 15791126 -186537221 - L1MB5 LINE L1 -6 6168 6044 30 27 0 0 chr4 15792290 15792327 -186536020 + AT_rich Low_complexity Low_complexity 1 37 0 861 133 0 23 chr4 15792327 15792455 -186535892 - FLAM_C SINE Alu -7 126 2 1378 186 60 70 chr4 15792755 15792965 -186535382 - L1MB5 LINE L1 0 6174 5968 2388 68 0 10 chr4 15792965 15793274 -186535073 - AluSc SINE Alu -3 306 1 1378 186 60 70 chr4 15793274 15793460 -186534887 - L1MB5 LINE L1 -206 5968 5782 1071 213 117 46 chr4 15793944 15794268 -186534079 - MER66A LTR ERV1 -105 373 27 611 257 143 0 chr4 15794581 15794756 -186533591 + MIR SINE MIR 2 201 -61 234 288 12 38 chr4 15794779 15794859 -186533488 + MIR SINE MIR 106 183 -79 191 218 204 35 chr4 15795701 15795813 -186532534 + MIR SINE MIR 19 152 -110 998 219 54 5 chr4 15796350 15796555 -186531792 + MER58A DNA MER1_type 10 224 0 2531 46 0 0 chr4 15796751 15797053 -186531294 + AluY SINE Alu 1 302 -9 485 265 98 40 chr4 15797541 15797861 -186530486 - MLT1I LTR MaLR -20 389 82 325 316 103 6 chr4 15798283 15798457 -186529890 + MER91A DNA MER1_type 1 191 -5 203 291 22 90 chr4 15798575 15798709 -186529638 + MIR SINE MIR 119 243 -19 234 242 81 71 chr4 15799470 15799569 -186528778 - MIR SINE MIR -68 194 95 1921 139 71 6 chr4 15799582 15799905 -186528442 + MER2 DNA MER2_type 1 344 0 3079 126 93 22 chr4 15799962 15800454 -186527893 - MER1A DNA MER1_type 0 527 1 407 325 49 21 chr4 15801129 15801372 -186526975 + L2 LINE L2 2715 2964 -350 255 294 305 5 chr4 15801468 15801665 -186526682 + MIR SINE MIR 7 262 0 374 299 106 53 chr4 15801671 15801935 -186526412 + L2 LINE L2 3003 3280 -33 459 247 88 53 chr4 15802937 15803164 -186525183 - Charlie8 DNA MER1_type -2152 265 31 2217 95 0 10 chr4 15803334 15803638 -186524709 - AluSg SINE Alu -9 301 1 2210 78 0 0 chr4 15803666 15803980 -186524367 + AluY SINE Alu 1 314 0 390 225 295 35 chr4 15804069 15804242 -186524105 + MIR SINE MIR 14 231 -31 216 0 0 0 chr4 15804296 15804320 -186524027 + (A)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr4 15804974 15805000 -186523347 + AT_rich Low_complexity Low_complexity 1 26 0 244 159 0 0 chr4 15805206 15805250 -186523097 + L2 LINE L2 3269 3312 -1 579 66 0 0 chr4 15805873 15805949 -186522398 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 1297 225 117 9 chr4 15806670 15806995 -186521352 - MLT1A1 LTR MaLR -3 362 3 2130 108 0 0 chr4 15807029 15807326 -186521021 + AluY SINE Alu 1 297 -14 258 303 67 0 chr4 15808043 15808132 -186520215 - LTR16A LTR ERVL -346 104 10 341 235 69 115 chr4 15809277 15809408 -186518939 + MIR SINE MIR 33 152 -110 2218 91 0 3 chr4 15809408 15809705 -186518642 + AluSg SINE Alu 1 296 -14 341 235 69 115 chr4 15809705 15809765 -186518582 + MIR SINE MIR 152 213 -49 832 143 0 0 chr4 15810164 15810290 -186518057 + FLAM_C SINE Alu 9 134 -9 303 28 0 0 chr4 15810783 15810819 -186517528 + (GA)n Simple_repeat Simple_repeat 2 37 0 273 75 0 0 chr4 15810818 15810858 -186517489 + (TG)n Simple_repeat Simple_repeat 2 41 0 * 191 250 146 21 chr4 15811056 15811152 -186517195 - MIR SINE MIR -67 141 34 383 250 100 7 chr4 15811265 15811405 -186516942 - Charlie8 DNA MER1_type -2228 189 37 1624 160 50 4 chr4 15811467 15811748 -186516599 - AluSx SINE Alu -18 294 1 305 290 93 55 chr4 15811979 15812162 -186516185 + MER117 DNA MER1_type 7 196 -1 1476 208 98 16 chr4 15812314 15812680 -186515667 + MSTD LTR MaLR 1 396 0 773 194 85 18 chr4 15814027 15814286 -186514061 - MER2 DNA MER2_type 0 345 1 241 274 0 0 chr4 15814316 15814378 -186513969 + (TA)n Simple_repeat Simple_repeat 1 62 0 33 66 0 0 chr4 15814393 15814454 -186513893 + AT_rich Low_complexity Low_complexity 1 61 0 2049 93 16 38 chr4 15814459 15814772 -186513575 + AluSx SINE Alu 6 311 -1 815 194 0 71 chr4 15814797 15814990 -186513357 + FAM SINE Alu 1 45 0 1921 103 40 4 chr4 15815050 15815359 -186512988 + AluSx SINE Alu 1 319 0 21 0 0 0 chr4 15817216 15817237 -186511110 + AT_rich Low_complexity Low_complexity 1 21 0 2290 85 0 0 chr4 15817243 15817538 -186510809 + AluSc SINE Alu 1 295 -14 311 302 60 7 chr4 15817595 15817744 -186510603 + L2 LINE L2 1750 1906 -1408 767 211 74 26 chr4 15818038 15818228 -186510119 - MER58A DNA MER1_type 0 224 26 513 237 35 0 chr4 15818478 15818592 -186509755 + MLT1J LTR MaLR 64 181 -330 297 324 205 0 chr4 15818860 15818903 -186509444 - L2 LINE L2 -131 3182 3149 2159 124 0 0 chr4 15818903 15819202 -186509145 + AluSx SINE Alu 1 299 -13 297 324 205 0 chr4 15819202 15819417 -186508930 - L2 LINE L2 -164 3149 2871 1898 134 17 0 chr4 15819835 15820126 -186508221 + AluSx SINE Alu 1 296 -16 1211 227 0 25 chr4 15820135 15820417 -186507930 + AluJo SINE Alu 1 275 -37 246 32 0 0 chr4 15820418 15820449 -186507898 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr4 15820901 15820930 -186507417 + AT_rich Low_complexity Low_complexity 1 29 0 485 229 40 51 chr4 15822670 15822845 -186505502 + MER5B DNA MER1_type 2 174 -4 333 203 68 68 chr4 15823623 15823786 -186504561 - HAL1b LINE L1 0 1348 1186 1990 163 41 46 chr4 15823869 15824261 -186504086 - MLT1B LTR MaLR 0 390 1 204 40 0 0 chr4 15824288 15824313 -186504034 + (T)n Simple_repeat Simple_repeat 1 25 0 1759 220 64 9 chr4 15824752 15825188 -186503159 - MLT1C LTR MaLR -2 465 6 2297 75 3 0 chr4 15825414 15825706 -186502641 - AluSx SINE Alu -19 293 1 694 246 11 17 chr4 15825751 15825930 -186502417 - MER5B DNA MER1_type 0 178 1 253 279 209 0 chr4 15825930 15826016 -186502331 + MER5B DNA MER1_type 74 177 -1 273 270 66 36 chr4 15826036 15826173 -186502174 - L2 LINE L2 -1 3312 3172 252 252 153 38 chr4 15826331 15826462 -186501885 - MIR SINE MIR -70 192 47 463 224 41 71 chr4 15826601 15826674 -186501673 + MER5A DNA MER1_type 3 77 -112 1936 131 0 3 chr4 15826674 15826965 -186501382 + AluSx SINE Alu 1 290 -22 463 224 41 71 chr4 15826965 15827061 -186501286 + MER5A DNA MER1_type 77 167 -22 1693 182 34 6 chr4 15827109 15827466 -186500881 + L1MB3 LINE L1 5802 6168 -15 305 256 48 0 chr4 15827495 15827620 -186500727 + L1M4 LINE L1 4888 5018 -1128 372 311 123 46 chr4 15828793 15829118 -186499229 - HERVL40 LTR ERVL -2160 3370 3021 2619 101 3 8 chr4 15829648 15830005 -186498342 + THE1A LTR MaLR 1 355 0 11712 95 12 12 chr4 15830005 15830825 -186497522 + THE1A-int LTR MaLR 1 823 -757 3001 126 11 17 chr4 15830825 15831286 -186497061 - LTR22A LTR ERVK 0 458 1 11712 95 12 12 chr4 15831286 15832045 -186496302 + THE1A-int LTR MaLR 822 1580 0 2673 102 3 0 chr4 15832045 15832399 -186495948 + THE1A LTR MaLR 1 355 0 1350 110 0 5 chr4 15832401 15832601 -186495746 + L1PB1 LINE L1 5953 6151 0 182 236 69 56 chr4 15833264 15833336 -186495011 + MIR SINE MIR 120 192 -70 751 175 0 0 chr4 15833336 15833456 -186494891 + FLAM_C SINE Alu 2 121 -22 216 97 0 0 chr4 15833456 15833487 -186494860 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1500 198 25 7 chr4 15834307 15834590 -186493757 + AluJo SINE Alu 2 289 -23 1404 178 37 11 chr4 15834590 15834882 -186493465 - AluSx SINE Alu 0 304 6 31 44 0 0 chr4 15834887 15834932 -186493415 + AT_rich Low_complexity Low_complexity 1 45 0 2097 108 10 0 chr4 15835038 15835343 -186493004 - AluSq SINE Alu -5 308 1 352 339 128 11 chr4 15835358 15835538 -186492809 + MIR SINE MIR 6 206 -56 1314 251 85 27 chr4 15836144 15836590 -186491757 + MER74B LTR ERVL 58 529 -93 1303 224 101 7 chr4 15836592 15836900 -186491447 + MER2 DNA MER2_type 1 337 -8 813 272 51 0 chr4 15837822 15838017 -186490330 + HERVL74 LTR ERVL 2473 2677 -3008 662 220 8 0 chr4 15838014 15838146 -186490201 + HERVL74 LTR ERVL 3208 3340 -2345 * 519 216 9 0 chr4 15838137 15838248 -186490099 + HERVL74 LTR ERVL 3488 3599 -2086 * 253 83 0 0 chr4 15838296 15838332 -186490015 + HERVL74 LTR ERVL 3940 3975 -1710 1189 217 114 69 chr4 15838334 15838754 -186489593 + MSTB2 LTR MaLR 17 455 -2 542 202 0 0 chr4 15838759 15838853 -186489494 + HERVL74 LTR ERVL 3980 4073 -1612 328 266 86 55 chr4 15839306 15839434 -186488913 + L2 LINE L2 3140 3271 -1 215 303 0 11 chr4 15840016 15840105 -186488242 + (TG)n Simple_repeat Simple_repeat 1 88 0 299 188 0 16 chr4 15840356 15840420 -186487927 + MER116 DNA Mariner 18 80 0 3070 128 11 68 chr4 15840502 15840835 -186487512 + L1PA16 LINE L1 5629 5919 -247 2042 130 0 0 chr4 15840835 15841136 -186487211 + AluSg SINE Alu 1 301 -9 3070 128 11 68 chr4 15841136 15841365 -186486982 + L1PA16 LINE L1 5919 6159 -7 1760 80 34 42 chr4 15841568 15841832 -186486515 - AluY SINE Alu -16 295 34 894 200 43 9 chr4 15842351 15842561 -186485786 + L1MC3 LINE L1 7357 7573 -212 * 2660 185 22 72 chr4 15842560 15843306 -186485041 + L1MC1 LINE L1 5656 6326 -7 207 0 0 0 chr4 15843307 15843330 -186485017 + (TAA)n Simple_repeat Simple_repeat 2 24 0 778 175 88 16 chr4 15843335 15843529 -186484818 + L1MC3 LINE L1 7563 7770 -15 242 347 12 24 chr4 15844071 15844238 -186484109 - L2 LINE L2 -236 3036 2872 255 114 0 0 chr4 15844243 15844287 -186484060 + (TG)n Simple_repeat Simple_repeat 2 45 0 483 186 6 22 chr4 15844308 15844491 -186483856 + (TG)n Simple_repeat Simple_repeat 1 180 0 488 235 111 92 chr4 15845113 15845330 -186483017 + Charlie8 DNA MER1_type 45 265 -2152 193 333 81 16 chr4 15845639 15845762 -186482585 - MIR SINE MIR -93 169 39 181 111 0 0 chr4 15846019 15846046 -186482301 - L2 LINE L2 -2 3311 3285 * 259 364 21 21 chr4 15846044 15846187 -186482160 + MIR3 SINE MIR 6 148 -60 258 342 43 34 chr4 15847114 15847231 -186481116 + MIR3 SINE MIR 6 123 -85 365 309 0 0 chr4 15847899 15847993 -186480354 + L2 LINE L2 3179 3272 0 279 306 60 30 chr4 15849532 15849666 -186478681 - MIR SINE MIR -96 166 29 677 306 122 28 chr4 15850477 15850830 -186477517 - L2 LINE L2 0 3313 2928 307 280 76 45 chr4 15850841 15850973 -186477374 - L2 LINE L2 0 3313 3178 189 348 32 39 chr4 15851443 15851598 -186476749 + MIR SINE MIR 93 246 -16 509 283 95 3 chr4 15851727 15851948 -186476399 - MIR SINE MIR -6 256 18 2270 105 0 0 chr4 15852219 15852532 -186475815 - AluSq SINE Alu 0 313 1 2445 127 11 8 chr4 15853170 15853533 -186474814 + THE1B LTR MaLR 1 364 0 376 343 10 0 chr4 15853548 15853647 -186474700 + L2 LINE L2 3172 3271 -1 303 299 93 0 chr4 15854269 15854366 -186473981 + L2 LINE L2 3147 3252 -20 822 249 24 0 chr4 15854382 15854595 -186473752 - MER20 DNA MER1_type -1 218 1 418 228 228 65 chr4 15855413 15855451 -186472896 - MIR SINE MIR -5 257 227 760 211 35 0 chr4 15855451 15855622 -186472725 + MER5B DNA MER1_type 1 177 -1 418 228 228 65 chr4 15855622 15855798 -186472549 - MIR SINE MIR -35 227 8 304 318 32 37 chr4 15855837 15856064 -186472283 + MIR SINE MIR 36 262 0 2128 110 0 10 chr4 15856142 15856442 -186471905 + AluSx SINE Alu 1 297 -15 2096 109 0 0 chr4 15856904 15857198 -186471149 + AluY SINE Alu 1 294 -17 189 107 0 0 chr4 15857206 15857234 -186471113 + (GGAA)n Simple_repeat Simple_repeat 2 29 0 234 281 34 34 chr4 15857518 15857607 -186470740 - L1MC/D LINE L1 -2017 5791 5703 1942 127 0 13 chr4 15857696 15857996 -186470351 - AluJo SINE Alu -16 296 1 809 229 22 27 chr4 15858005 15858228 -186470119 - L1MC5 LINE L1 -36 7925 7704 466 281 16 8 chr4 15858229 15858357 -186469990 - L1MC/D LINE L1 -503 5618 5490 481 240 168 89 chr4 15858394 15858442 -186469905 - LTR33A LTR ERVL -24 499 456 1952 129 10 6 chr4 15858442 15858753 -186469594 + AluSq SINE Alu 1 312 -1 481 240 168 89 chr4 15858753 15859108 -186469239 - LTR33A LTR ERVL -67 456 64 307 297 61 135 chr4 15859293 15859397 -186468950 + L1MC/D LINE L1 5502 5581 -2227 1792 145 0 23 chr4 15859397 15859700 -186468647 + AluJo SINE Alu 1 296 -16 307 297 61 135 chr4 15859700 15859824 -186468523 + L1MC/D LINE L1 5581 5713 -2095 303 357 79 0 chr4 15860013 15860139 -186468208 - MIR SINE MIR -11 251 116 235 298 121 42 chr4 15860249 15860464 -186467883 - L2 LINE L2 -199 3073 2842 1040 292 62 40 chr4 15860474 15860974 -186467373 - LTR33 LTR ERVL -10 511 1 355 328 77 84 chr4 15861017 15861391 -186466956 - L2 LINE L2 -564 2750 2375 1585 187 0 13 chr4 15861391 15861512 -186466835 + AluJb SINE Alu 1 122 -190 279 0 0 0 chr4 15861512 15861543 -186466804 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 225 0 0 0 chr4 15861551 15861576 -186466771 + (CA)n Simple_repeat Simple_repeat 2 26 0 1585 187 0 13 chr4 15861576 15861760 -186466587 + AluJb SINE Alu 129 311 -1 355 328 77 84 chr4 15861760 15861956 -186466391 - L2 LINE L2 -939 2375 2179 2160 110 0 0 chr4 15861956 15862256 -186466091 + AluSq SINE Alu 1 300 -13 355 328 77 84 chr4 15862256 15862502 -186465845 - L2 LINE L2 -1135 2179 1939 585 134 21 10 chr4 15862520 15862617 -186465730 + MER4A LTR ERV1 1 98 -566 1800 147 3 27 chr4 15862617 15862971 -186465376 + MER4A LTR ERV1 261 664 0 1703 198 121 18 chr4 15864314 15864753 -186463594 - MER50 LTR ERV1 0 734 251 919 103 0 0 chr4 15864761 15864897 -186463450 - AluSg/x SINE Alu -1 309 174 443 264 101 8 chr4 15864961 15865090 -186463257 - MER50 LTR ERV1 -584 150 10 254 311 0 0 chr4 15865099 15865173 -186463174 - L2 LINE L2 -6 3307 3234 1189 133 49 8 chr4 15865397 15865700 -186462647 + MER83B LTR ERV1 3 378 0 277 321 84 70 chr4 15866156 15866455 -186461892 - L2 LINE L2 -93 3179 2877 237 373 0 0 chr4 15866523 15866598 -186461749 - MIR SINE MIR -71 191 117 318 260 55 0 chr4 15866722 15866837 -186461510 + MIR SINE MIR 32 161 -63 1291 127 101 13 chr4 15866866 15867103 -186461244 - Tigger2 DNA MER2_type 0 2718 2461 4401 139 23 20 chr4 15867156 15867898 -186460449 - Tigger2 DNA MER2_type -1974 744 1 486 260 70 45 chr4 15868022 15868186 -186460161 - MLT1I LTR MaLR -177 232 61 4085 74 0 4 chr4 15868186 15868699 -186459648 + MER9 LTR ERVK 1 511 0 486 260 70 45 chr4 15868699 15868734 -186459613 - MLT1I LTR MaLR -348 61 28 307 182 104 13 chr4 15869175 15869252 -186459095 + MER51C LTR ERV1 346 429 -211 888 233 5 32 chr4 15869281 15869500 -186458847 + MER51C LTR ERV1 428 640 0 194 220 0 40 chr4 15869571 15869621 -186458726 - L2 LINE L2 -5 3308 3261 1186 157 22 110 chr4 15869891 15870209 -186458138 + MER74A LTR ERVL 269 558 0 324 302 85 52 chr4 15870843 15870998 -186457349 - MIR SINE MIR -32 176 4 261 330 34 0 chr4 15871549 15871637 -186456710 + MIR SINE MIR 38 128 -80 185 321 0 0 chr4 15871644 15871697 -186456650 - L2 LINE L2 -6 3266 3214 257 350 8 17 chr4 15871705 15871822 -186456525 + MIR SINE MIR 10 125 -137 532 220 8 42 chr4 15871989 15872107 -186456240 + MER81 DNA DNA 1 114 0 992 209 90 0 chr4 15872624 15872858 -186455489 - MLT1B LTR MaLR -125 265 11 673 317 87 24 chr4 15873071 15873497 -186454850 - L1MC4a LINE L1 -1906 5902 5450 227 272 196 0 chr4 15873649 15873741 -186454606 + L2 LINE L2 3155 3264 -8 235 329 12 12 chr4 15873804 15873886 -186454461 + L2 LINE L2 3186 3267 -5 3929 160 66 6 chr4 15874162 15874843 -186453504 - MER72 LTR ERV1 0 722 1 1168 221 12 4 chr4 15874999 15875253 -186453094 + AluJo SINE Alu 35 290 -22 23 0 0 0 chr4 15875253 15875276 -186453071 + AT_rich Low_complexity Low_complexity 1 23 0 2890 116 12 0 chr4 15875617 15876021 -186452326 + MSTA LTR MaLR 20 428 0 2082 204 21 41 chr4 15876316 15876831 -186451516 - MLT1D LTR MaLR 0 505 1 2168 185 72 6 chr4 15877137 15877612 -186450735 + Charlie1b DNA MER1_type 18 523 0 1673 178 3 13 chr4 15877812 15878127 -186450220 + AluJo SINE Alu 1 312 0 310 312 38 32 chr4 15878394 15878551 -186449796 + MIR SINE MIR 93 250 -12 25 0 0 0 chr4 15878791 15878816 -186449531 + GC_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 15879007 15879029 -186449318 + AT_rich Low_complexity Low_complexity 1 22 0 411 289 129 47 chr4 15879287 15879519 -186448828 - MIR SINE MIR -2 260 10 1581 286 102 28 chr4 15879704 15880527 -186447820 - L2 LINE L2 -72 3241 2348 2525 138 6 3 chr4 15880581 15880944 -186447403 - THE1B LTR MaLR 0 364 1 355 291 67 22 chr4 15881412 15881546 -186446801 - MIR3 SINE MIR -49 159 20 2073 127 10 20 chr4 15881603 15881903 -186446444 + AluSx SINE Alu 1 297 -15 960 290 90 36 chr4 15881954 15882420 -186445927 + L1MC4a LINE L1 5501 5991 -130 1361 226 65 42 chr4 15883152 15883537 -186444810 + MLT1D LTR MaLR 7 400 -105 779 207 0 28 chr4 15883539 15883806 -186444541 + AluJb SINE Alu 159 421 0 227 191 0 0 chr4 15883810 15883852 -186444495 + LTR45B LTR ERV1 178 219 -270 426 203 0 0 chr4 15883861 15883940 -186444407 + MLT1D LTR MaLR 427 505 0 1916 177 0 3 chr4 15884038 15884349 -186443998 + AluJb SINE Alu 1 310 -2 705 244 78 79 chr4 15884444 15884919 -186443428 + L1MC4 LINE L1 7463 8013 -29 2440 132 50 65 chr4 15885130 15885308 -186443039 + LTR45B LTR ERV1 18 197 -292 1580 185 3 14 chr4 15885308 15885595 -186442752 + AluJo SINE Alu 9 292 -20 2440 132 50 65 chr4 15885595 15885895 -186442452 + LTR45B LTR ERV1 197 489 0 783 294 155 14 chr4 15886242 15886661 -186441686 - L2 LINE L2 -1 3312 2835 2166 214 78 98 chr4 15886705 15887440 -186440907 + MER21B LTR ERV1 40 759 -104 213 346 26 0 chr4 15887459 15887537 -186440810 - L2 LINE L2 -475 2839 2760 294 288 24 64 chr4 15887585 15887710 -186440637 - MIR SINE MIR -55 207 88 886 64 0 0 chr4 15887883 15887992 -186440355 + MER57B LTR ERV1 322 430 -4 219 69 0 0 chr4 15888069 15888098 -186440249 + (T)n Simple_repeat Simple_repeat 1 29 0 1238 150 5 5 chr4 15888201 15888394 -186439953 - AluJo SINE Alu -119 193 1 24 67 0 0 chr4 15888415 15888460 -186439887 + AT_rich Low_complexity Low_complexity 1 45 0 343 191 0 0 chr4 15888511 15888579 -186439768 + MER113 DNA MER1_type? 234 301 -220 195 42 0 0 chr4 15888579 15888603 -186439744 + (GAAA)n Simple_repeat Simple_repeat 3 26 0 248 130 22 0 chr4 15888622 15888668 -186439679 + A-rich Low_complexity Low_complexity 4 50 0 357 24 0 0 chr4 15888900 15888942 -186439405 + (GA)n Simple_repeat Simple_repeat 2 43 0 254 333 36 9 chr4 15889154 15889265 -186439082 - L2 LINE L2 -5 3267 3154 21 0 0 0 chr4 15889341 15889362 -186438985 + AT_rich Low_complexity Low_complexity 1 21 0 1896 248 39 4 chr4 15890600 15891084 -186437263 + L1ME3A LINE L1 5427 5927 -243 622 192 70 13 chr4 15891191 15891347 -186437000 + L1ME3A LINE L1 5923 6087 -83 697 263 5 56 chr4 15891358 15891571 -186436776 - MLT1A2 LTR MaLR -172 202 1 252 296 188 17 chr4 15892292 15892468 -186435879 - MLT1L LTR MaLR -201 414 209 272 272 0 19 chr4 15892490 15892593 -186435754 - L1MC4 LINE L1 -1328 6714 6614 350 287 144 29 chr4 15893566 15893729 -186434618 - MLT1J LTR MaLR -5 506 324 1022 171 48 187 chr4 15893729 15894018 -186434329 + MSTD LTR MaLR 1 206 -190 4388 104 32 3 chr4 15894018 15894603 -186433744 - LTR43 LTR ERV1 0 602 1 1022 171 48 187 chr4 15894603 15894768 -186433579 + MSTD LTR MaLR 206 392 -4 2371 86 7 0 chr4 15895025 15895327 -186433020 - AluSp SINE Alu -9 304 1 286 241 25 25 chr4 15895368 15895447 -186432900 - MLT1L LTR MaLR -536 79 1 33 43 0 0 chr4 15895939 15895986 -186432361 + AT_rich Low_complexity Low_complexity 1 47 0 2815 129 19 14 chr4 15896081 15896507 -186431840 - MSTA LTR MaLR 0 428 1 2378 60 0 0 chr4 15896674 15897004 -186431343 + AluY SINE Alu 1 330 0 599 316 52 5 chr4 15897212 15897424 -186430923 - MIR SINE MIR -33 229 8 2009 117 24 14 chr4 15897695 15897986 -186430361 - AluSp SINE Alu -17 296 3 259 360 0 0 chr4 15898184 15898273 -186430074 + MIR SINE MIR 58 146 -62 696 320 9 9 chr4 15898320 15898542 -186429805 + MIR SINE MIR 41 262 0 1096 283 104 46 chr4 15899049 15899636 -186428711 + L1MC4a LINE L1 5543 6163 -1645 337 141 87 54 chr4 15899662 15899754 -186428593 + MER113 DNA MER1_type? 120 214 -307 264 77 0 0 chr4 15899765 15899804 -186428543 + (TC)n Simple_repeat Simple_repeat 2 40 0 414 0 0 0 chr4 15899804 15899850 -186428497 + (CA)n Simple_repeat Simple_repeat 1 46 0 410 335 57 31 chr4 15899911 15900105 -186428242 + L2 LINE L2 3019 3217 -55 3352 198 48 21 chr4 15900620 15901323 -186427024 + MER72 LTR ERV1 1 722 0 1990 200 48 28 chr4 15901942 15902437 -186425910 - MLT1D LTR MaLR 0 505 1 667 271 61 33 chr4 15903100 15903314 -186425033 + MIR SINE MIR 19 238 -24 1703 260 106 48 chr4 15903426 15903521 -186424826 - L2 LINE L2 -1048 2266 2178 2252 123 0 0 chr4 15903521 15903821 -186424526 + AluSx SINE Alu 1 300 -12 1703 260 106 48 chr4 15903821 15904482 -186423865 - L2 LINE L2 -1136 2178 1466 262 255 75 11 chr4 15904490 15904584 -186423763 + MIR SINE MIR 106 205 -57 268 271 79 50 chr4 15905088 15905228 -186423119 + MIR3 SINE MIR 58 201 -7 3563 204 24 62 chr4 15905341 15906349 -186421998 - LTR5 LTR ERVK 0 969 1 1323 150 14 1 chr4 15906584 15906956 -186421391 - MSTB LTR MaLR 0 426 1 554 238 22 40 chr4 15907347 15907499 -186420848 + MLT1H1 LTR MaLR 401 555 0 234 364 45 0 chr4 15907561 15907671 -186420676 - MIR3 SINE MIR -17 191 77 1272 228 25 3 chr4 15907673 15908033 -186420314 - L1 LINE L1 -2751 3395 3028 282 298 67 10 chr4 15908249 15908353 -186419994 + LTR33A LTR ERVL 61 170 -353 635 178 40 7 chr4 15908559 15908711 -186419636 + LTR33 LTR ERVL 345 501 -20 2109 145 0 0 chr4 15909260 15909563 -186418784 + AluSx SINE Alu 1 303 -9 789 169 0 0 chr4 15909738 15909856 -186418491 - FLAM_C SINE Alu -15 118 1 256 368 9 0 chr4 15910150 15910256 -186418091 + MIR3 SINE MIR 66 172 -36 2620 108 68 22 chr4 15910413 15910822 -186417525 - MSTA LTR MaLR 0 428 1 1732 193 13 0 chr4 15911194 15911500 -186416847 - AluSx SINE Alu -2 310 1 1160 228 97 79 chr4 15911500 15911827 -186416520 - HAL1 LINE L1 -1011 1496 1177 2691 35 3 0 chr4 15911827 15912137 -186416210 - AluY SINE Alu 0 311 1 1160 228 97 79 chr4 15912137 15912458 -186415889 - HAL1 LINE L1 -1330 1177 836 657 281 70 40 chr4 15912461 15912760 -186415587 - MLT1I LTR MaLR -2 407 100 1155 278 135 60 chr4 15912846 15913377 -186414970 - HAL1 LINE L1 -1669 838 233 2332 134 71 3 chr4 15913377 15913742 -186414605 - MLT1B LTR MaLR 0 390 1 1155 278 135 60 chr4 15913742 15913958 -186414389 - HAL1 LINE L1 -2274 233 35 256 176 14 27 chr4 15914060 15914134 -186414213 + GA-rich Low_complexity Low_complexity 1 73 0 3077 152 107 13 chr4 15914241 15914795 -186413552 - LTR9 LTR ERV1 -6 606 1 1196 140 0 0 chr4 15916159 15916337 -186412010 - MER41C LTR ERV1 0 554 377 936 194 23 60 chr4 15916451 15916667 -186411680 + LTR8A LTR ERV1 277 484 -243 534 128 26 0 chr4 15916667 15916745 -186411602 - AluSc SINE Alu -16 293 214 676 57 86 0 chr4 15916761 15917041 -186411306 + (TA)n Simple_repeat Simple_repeat 1 304 0 519 65 77 24 chr4 15917013 15917181 -186411166 + (TATAA)n Simple_repeat Simple_repeat 4 180 0 * 36 0 0 0 chr4 15917181 15917217 -186411130 + AT_rich Low_complexity Low_complexity 1 36 0 437 339 30 19 chr4 15917342 15917582 -186410765 - MIR SINE MIR 0 262 17 294 328 89 6 chr4 15918513 15918677 -186409670 - MIR3 SINE MIR -5 257 70 463 216 18 45 chr4 15918691 15918802 -186409545 + MER81 DNA DNA 2 109 -5 2192 113 10 0 chr4 15919010 15919310 -186409037 - AluSq SINE Alu -10 303 1 2451 72 19 0 chr4 15920602 15920909 -186407438 - AluSp SINE Alu 0 313 1 771 322 66 55 chr4 15921538 15922026 -186406321 + MLT1J LTR MaLR 16 508 -3 353 267 200 7 chr4 15922027 15922162 -186406185 - MIR SINE MIR -70 192 32 317 283 101 31 chr4 15922279 15922438 -186405909 - MIR SINE MIR -91 171 2 244 409 7 14 chr4 15923118 15923260 -186405087 + L2 LINE L2 2609 2749 -565 452 226 7 82 chr4 15923263 15923297 -186405050 + MLT1H LTR MaLR 10 45 -504 2902 95 14 0 chr4 15923297 15923667 -186404680 - THE1C LTR MaLR 0 375 1 452 226 7 82 chr4 15923667 15923778 -186404569 + MLT1H LTR MaLR 45 144 -405 550 191 55 0 chr4 15923819 15923929 -186404418 - L1MC1 LINE L1 -1 6332 6217 239 243 135 20 chr4 15923938 15924086 -186404261 + L1MC/D LINE L1 5723 5887 -1921 482 211 29 88 chr4 15924147 15924318 -186404029 - MER104 DNA Tc2 -3 177 17 6467 133 34 17 chr4 15924350 15924648 -186403699 - L1MA4A LINE L1 -3 6300 6009 405 0 0 0 chr4 15924648 15924693 -186403654 + (CA)n Simple_repeat Simple_repeat 1 45 0 6467 133 34 17 chr4 15924693 15925880 -186402467 - L1MA4A LINE L1 -294 6009 4770 2097 124 0 0 chr4 15925880 15926171 -186402176 - AluSc SINE Alu -6 303 13 6467 133 34 17 chr4 15926171 15926342 -186402005 - L1MA4A LINE L1 -1533 4770 4603 240 278 144 0 chr4 15926995 15927092 -186401255 - L2 LINE L2 -12 3301 3191 289 282 141 88 chr4 15927143 15927244 -186401103 - MLT1J LTR MaLR -175 336 242 3168 61 35 5 chr4 15927244 15927498 -186400849 + L1PA6 LINE L1 5747 6019 -135 180 0 0 0 chr4 15927498 15927518 -186400829 + (GGGA)n Simple_repeat Simple_repeat 1 20 0 3168 61 35 5 chr4 15927518 15927659 -186400688 + L1PA6 LINE L1 6019 6154 0 289 282 141 88 chr4 15927659 15927876 -186400471 - MLT1J LTR MaLR -269 242 1 2426 82 0 0 chr4 15928162 15928465 -186399882 + AluSc SINE Alu 1 303 -6 193 0 61 30 chr4 15929364 15929397 -186398950 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 460 316 0 0 chr4 15929400 15929536 -186398811 - MIR SINE MIR -8 254 119 2098 163 54 32 chr4 15929869 15930407 -186397940 + MLT2A2 LTR ERVL 1 554 0 231 122 41 20 chr4 15930407 15930456 -186397891 + LTR67 LTR ERVL 508 557 0 202 28 28 28 chr4 15930523 15930559 -186397788 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1720 167 0 11 chr4 15930577 15930847 -186397500 - AluJo SINE Alu -45 267 1 2452 92 10 0 chr4 15930905 15931225 -186397122 + L1PA13 LINE L1 5822 6144 -19 1765 62 9 4 chr4 15931857 15932082 -186396265 + AluY SINE Alu 83 308 -3 2173 145 0 35 chr4 15932803 15933147 -186395200 + MER7A DNA MER2_type 1 330 -16 317 282 8 26 chr4 15933151 15933268 -186395079 + (TATG)n Simple_repeat Simple_repeat 2 116 0 191 371 0 0 chr4 15934372 15934434 -186393913 - MIR SINE MIR -62 146 85 1654 173 36 10 chr4 15934559 15934860 -186393487 - AluJb SINE Alu -3 309 1 634 244 145 50 chr4 15934877 15935278 -186393069 + L1M4 LINE L1 2838 3276 -2870 457 292 37 51 chr4 15935474 15935583 -186392764 + MIR SINE MIR 2 106 -143 527 139 13 0 chr4 15935583 15935662 -186392685 + MADE1 DNA Mariner 1 80 0 457 292 37 51 chr4 15935662 15935741 -186392606 + MIR SINE MIR 106 185 -64 252 0 0 0 chr4 15937261 15937289 -186391058 + (T)n Simple_repeat Simple_repeat 1 28 0 44010 29 22 1 chr4 15937312 15943338 -186385009 - L1HS LINE L1 0 6155 1 28 48 0 0 chr4 15943817 15943859 -186384488 + AT_rich Low_complexity Low_complexity 1 42 0 372 247 171 51 chr4 15945098 15945162 -186383185 + MER5A DNA MER1_type 13 68 -121 2405 97 0 0 chr4 15945162 15945473 -186382874 + AluY SINE Alu 1 311 0 372 247 171 51 chr4 15945473 15945566 -186382781 + MER5A DNA MER1_type 68 189 0 317 301 157 6 chr4 15945985 15946151 -186382196 - MIR SINE MIR 0 262 72 23 0 0 0 chr4 15947519 15947542 -186380805 + AT_rich Low_complexity Low_complexity 1 23 0 369 281 9 9 chr4 15947933 15948047 -186380300 - MIR SINE MIR -67 195 82 436 294 24 8 chr4 15948211 15948337 -186380010 + MIR SINE MIR 20 147 -115 1544 205 35 49 chr4 15948410 15948780 -186379567 + MLT1A1 LTR MaLR 1 365 0 191 111 0 28 chr4 15948876 15948912 -186379435 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 972 119 8 0 chr4 15949073 15949207 -186379140 + AluSq/x SINE Alu 1 135 -178 2341 112 0 0 chr4 15949207 15949519 -186378828 + AluSx SINE Alu 1 312 0 2953 140 19 13 chr4 15949525 15949990 -186378357 + L1MA5A LINE L1 5828 6295 -2 628 278 35 26 chr4 15950033 15950263 -186378084 + MIR SINE MIR 29 260 -2 15649 127 61 14 chr4 15951543 15955264 -186373083 + L1MA2 LINE L1 891 7559 -164 1531 86 68 32 chr4 15955264 15955485 -186372862 - MER30 DNA MER1_type -1 229 1 15649 127 61 14 chr4 15955485 15955659 -186372688 + L1MA2 LINE L1 7559 7723 0 5547 150 36 15 chr4 15955678 15956569 -186371778 + L1MA7 LINE L1 5262 6178 -113 2055 141 0 3 chr4 15956569 15956866 -186371481 + AluJb SINE Alu 1 296 -16 5547 150 36 15 chr4 15956866 15956983 -186371364 + L1MA7 LINE L1 6178 6291 0 644 260 115 4 chr4 15957635 15957870 -186370477 + MIR SINE MIR 2 262 0 310 293 120 16 chr4 15957870 15958112 -186370235 + L1MC/D LINE L1 5265 5531 -2277 872 134 0 63 chr4 15958119 15958261 -186370086 - FLAM_C SINE Alu 0 133 1 351 0 0 0 chr4 15958386 15958425 -186369922 + (TG)n Simple_repeat Simple_repeat 1 39 0 268 148 23 80 chr4 15958843 15958931 -186369416 + A-rich Low_complexity Low_complexity 1 83 0 2502 153 36 10 chr4 15959319 15959736 -186368611 + MSTB1 LTR MaLR 1 428 -4 431 226 83 106 chr4 15960032 15960183 -186368164 - MER112 DNA MER1_type -48 212 66 180 0 0 0 chr4 15960183 15960203 -186368144 + (TG)n Simple_repeat Simple_repeat 2 21 0 431 226 83 106 chr4 15960203 15960268 -186368079 - MER112 DNA MER1_type -194 66 1 30 0 0 0 chr4 15960539 15960569 -186367778 + AT_rich Low_complexity Low_complexity 1 30 0 25662 157 37 44 chr4 15960589 15965543 -186362804 - L1PA10 LINE L1 -24 6144 1246 2713 65 21 0 chr4 15965543 15965881 -186362466 - L1PA7 LINE L1 0 6154 5810 25662 157 37 44 chr4 15965881 15967118 -186361229 - L1PA10 LINE L1 -4922 1246 1 434 269 56 82 chr4 15967138 15967406 -186360941 + MIR SINE MIR 2 262 0 208 298 0 106 chr4 15967692 15967796 -186360551 + MIR SINE MIR 90 182 -80 204 206 0 0 chr4 15967871 15967905 -186360442 + (CTA)n Simple_repeat Simple_repeat 1 34 0 25 51 0 0 chr4 15968390 15968429 -186359918 + AT_rich Low_complexity Low_complexity 1 39 0 13227 97 10 4 chr4 15968516 15969780 -186358567 + L1PA8 LINE L1 3548 4804 -1368 2382 103 0 0 chr4 15969780 15970090 -186358257 + AluSg SINE Alu 1 310 0 13227 97 10 4 chr4 15970090 15971454 -186356893 + L1PA8 LINE L1 4804 6168 -4 6027 211 27 25 chr4 15971454 15972166 -186356181 + L1M4 LINE L1 3830 4539 -1639 2264 96 0 13 chr4 15972166 15972469 -186355878 - AluSg SINE Alu -11 299 1 6027 211 27 25 chr4 15972469 15972722 -186355625 + L1M4 LINE L1 4539 4790 -1388 1684 256 36 34 chr4 15972722 15973246 -186355101 + LTR45 LTR ERV1 1 525 0 6027 211 27 25 chr4 15973246 15973919 -186354428 + L1M4 LINE L1 4790 5465 -713 530 209 27 9 chr4 15973922 15974032 -186354315 + MLT1C LTR MaLR 2 113 -354 459 187 13 0 chr4 15974037 15974112 -186354235 + MER5A DNA MER1_type 114 189 0 182 337 0 47 chr4 15974750 15974836 -186353511 - MIR3 SINE MIR -7 201 120 404 286 60 54 chr4 15975272 15975440 -186352907 + MER5B DNA MER1_type 1 169 -9 347 327 0 0 chr4 15975442 15975543 -186352804 - MIR3 SINE MIR -41 167 67 327 311 146 9 chr4 15975724 15975943 -186352404 - MIR SINE MIR -1 261 13 1862 213 62 38 chr4 15977343 15977873 -186350474 + MER90 LTR ERV1 72 614 0 241 307 197 0 chr4 15978333 15978470 -186349877 - MIR SINE MIR -20 242 79 780 275 20 93 chr4 15979197 15979593 -186348754 - L2 LINE L2 0 3313 2947 424 223 37 79 chr4 15979598 15979813 -186348534 + L1ME1 LINE L1 5111 5316 -830 4526 147 30 10 chr4 15979820 15980587 -186347760 - L1MA5 LINE L1 -2 6298 5517 3991 116 24 22 chr4 15980589 15981221 -186347126 + L1PA16 LINE L1 5525 6157 -9 12193 158 40 31 chr4 15981228 15982040 -186346307 - L1MA5 LINE L1 -750 5396 4593 1776 145 52 0 chr4 15982040 15982397 -186345950 + AluSx SINE Alu 1 371 0 12193 158 40 31 chr4 15982397 15984245 -186344102 - L1MA5 LINE L1 -1553 4593 2849 2247 219 68 28 chr4 15984246 15984598 -186343749 + L1ME1 LINE L1 5294 5685 -481 3955 119 28 2 chr4 15984598 15985163 -186343184 - LTR19B LTR ERV1 0 580 1 2247 219 68 28 chr4 15985163 15985455 -186342892 + L1ME1 LINE L1 5685 5964 -202 852 300 115 15 chr4 15985472 15986230 -186342117 + L1ME4a LINE L1 4746 5584 -754 254 219 0 89 chr4 15986342 15986448 -186341899 + MLT1J LTR MaLR 108 267 -332 295 247 140 11 chr4 15986591 15986684 -186341663 + MLT1L LTR MaLR 442 546 -69 853 146 0 0 chr4 15986689 15986812 -186341535 + FLAM_C SINE Alu 1 123 -20 300 240 13 0 chr4 15986822 15986897 -186341450 + MLT1L LTR MaLR 540 615 0 1942 176 86 32 chr4 15986902 15987344 -186341003 + MLT1C LTR MaLR 1 466 -1 253 262 33 33 chr4 15987507 15987629 -186340718 + L1ME4a LINE L1 5751 5872 -298 799 291 142 14 chr4 15987699 15988129 -186340218 + L1MC4a LINE L1 5414 5898 -1910 32 26 0 0 chr4 15988399 15988438 -186339909 + AT_rich Low_complexity Low_complexity 1 39 0 238 167 12 60 chr4 15989327 15989411 -186338936 + L1ME4a LINE L1 6041 6120 -1 725 244 81 37 chr4 15990143 15990414 -186337933 + L2 LINE L2 1734 2016 -1298 399 206 0 21 chr4 15990420 15990517 -186337830 + L2 LINE L2 2218 2312 -1002 513 162 20 20 chr4 15990521 15990620 -186337727 - Tigger7 DNA MER2_type 0 2487 2389 * 1399 182 0 82 chr4 15990618 15990909 -186337438 - Tigger7 DNA MER2_type -466 267 1 1041 274 50 6 chr4 15990910 15991253 -186337094 + L2 LINE L2 2343 2700 -614 279 193 0 0 chr4 15991658 15991715 -186336632 - L2 LINE L2 -1040 2274 2218 216 167 30 45 chr4 15991721 15991787 -186336560 - L2 LINE L2 -1298 2016 1952 943 244 71 76 chr4 15991787 15992364 -186335983 + L1MC5 LINE L1 7340 7913 -48 231 36 0 0 chr4 15992401 15992429 -186335918 + (TTTTC)n Simple_repeat Simple_repeat 4 31 0 6252 74 15 63 chr4 15992443 15993445 -186334902 - SVA Other Other 0 1386 433 1542 73 11 25 chr4 15993464 15993739 -186334608 - SVA Other Other -520 866 596 5387 68 29 53 chr4 15993767 15994733 -186333614 - SVA Other Other -520 866 50 558 43 0 0 chr4 15994739 15994808 -186333539 + (GGGAGA)n Simple_repeat Simple_repeat 5 73 0 408 311 30 0 chr4 15994809 15994941 -186333406 + L2 LINE L2 2914 3049 -264 2380 157 11 39 chr4 15994941 15995381 -186332966 - MSTC LTR MaLR 0 428 1 305 207 30 40 chr4 15995386 15995537 -186332810 + LTR37B LTR ERV1 187 387 -81 759 243 22 0 chr4 15995560 15995745 -186332602 + L2 LINE L2 3121 3309 -4 1088 193 131 103 chr4 15995752 15996188 -186332159 + LTR37B LTR ERV1 10 457 -11 301 292 71 0 chr4 15996602 15996715 -186331632 + MER117 DNA MER1_type 33 153 -44 2509 150 50 11 chr4 15996789 15997230 -186331117 + LTR22A LTR ERVK 1 458 0 803 200 171 0 chr4 15997419 15997589 -186330758 + MER45C DNA AcHobo 750 948 -5 1966 159 107 39 chr4 15997651 15998210 -186330137 + pTR5 LTR ERV1 743 1339 -1099 4791 105 20 112 chr4 15998231 15999136 -186329211 + LTR12 LTR ERV1 5 826 0 2293 96 0 3 chr4 15999837 16000130 -186328217 - AluSc SINE Alu -17 292 1 261 316 82 10 chr4 16001305 16001403 -186326944 - L2 LINE L2 -12 3260 3156 318 219 149 18 chr4 16002320 16002434 -186325913 - L2 LINE L2 0 3313 3185 824 272 124 53 chr4 16002580 16003073 -186325274 + MLT1H1 LTR MaLR 28 555 0 2032 152 47 32 chr4 16003126 16003533 -186324814 + MLT2D LTR ERVL 2 414 0 313 371 13 39 chr4 16003605 16003781 -186324566 + MLT1H1-int LTR MaLR 302 472 -899 207 0 0 0 chr4 16003788 16003811 -186324536 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1843 123 54 0 chr4 16003811 16004079 -186324268 - AluSx SINE Alu -26 286 1 313 371 13 39 chr4 16004079 16004131 -186324216 + MLT1H1-int LTR MaLR 472 524 -847 441 54 0 0 chr4 16004333 16004389 -186323958 + (TG)n Simple_repeat Simple_repeat 1 56 0 503 266 133 67 chr4 16004402 16004823 -186323524 + L1MC4a LINE L1 5258 5706 -415 458 268 63 8 chr4 16004826 16004953 -186323394 + L2 LINE L2 3180 3313 0 409 242 129 0 chr4 16004960 16005084 -186323263 + L1MC4a LINE L1 5723 5862 -1946 263 234 0 47 chr4 16005469 16005533 -186322814 + L1ME2 LINE L1 5965 6025 -139 210 298 53 90 chr4 16006824 16007012 -186321335 + L2 LINE L2 2864 3044 -228 829 231 108 0 chr4 16007019 16007222 -186321125 + MIR SINE MIR 38 262 0 1759 283 135 40 chr4 16007377 16007650 -186320697 - L2 LINE L2 -282 3031 2785 6786 76 10 2 chr4 16007650 16009012 -186319335 - L1PA10 LINE L1 0 6168 4784 1759 283 135 40 chr4 16009012 16010015 -186318332 - L2 LINE L2 -528 2785 1626 1004 93 0 105 chr4 16010030 16010202 -186318145 - AluJb SINE Alu -93 219 66 302 264 255 35 chr4 16010297 16010584 -186317763 - L2 LINE L2 -1846 1468 1093 2322 153 5 13 chr4 16010584 16010977 -186317370 - MLT1B LTR MaLR 0 390 1 302 264 255 35 chr4 16010977 16011030 -186317317 - L2 LINE L2 -2221 1093 1053 1239 158 36 43 chr4 16011036 16011341 -186317006 - AluJb SINE Alu 0 312 49 320 374 0 0 chr4 16011341 16011480 -186316867 - L2 LINE L2 -2259 1055 917 664 297 66 40 chr4 16011485 16011865 -186316482 + L2 LINE L2 2300 2689 -625 293 250 196 25 chr4 16012012 16012216 -186316131 + L2 LINE L2 2835 3073 -199 225 0 0 0 chr4 16012875 16012900 -186315447 + (GA)n Simple_repeat Simple_repeat 2 26 0 354 300 42 32 chr4 16012900 16013090 -186315257 - L1MC4a LINE L1 -1873 5935 5744 446 285 145 21 chr4 16013093 16013286 -186315061 - L1MC4a LINE L1 -2099 5709 5493 286 309 81 0 chr4 16013589 16013725 -186314622 + MIR SINE MIR 83 229 -33 340 260 52 0 chr4 16013808 16013885 -186314462 - L2 LINE L2 0 3313 3233 245 319 31 38 chr4 16013962 16014122 -186314225 + MIR SINE MIR 91 249 -13 2178 93 18 0 chr4 16014182 16014485 -186313862 - AluSx SINE Alu 0 308 1 2173 121 7 0 chr4 16014769 16015067 -186313280 + AluSx SINE Alu 1 300 -12 23 86 0 0 chr4 16015180 16015238 -186313109 + AT_rich Low_complexity Low_complexity 1 58 0 261 270 7 102 chr4 16015497 16015634 -186312713 + L2 LINE L2 3184 3307 -6 2825 22 0 9 chr4 16016113 16016428 -186311919 + AluYb8 SINE Alu 1 312 -6 996 135 0 0 chr4 16016988 16017121 -186311226 + AluSq/x SINE Alu 1 133 -179 2306 99 0 3 chr4 16017306 16017599 -186310748 + AluSc SINE Alu 1 292 -17 198 0 0 0 chr4 16018099 16018121 -186310226 + (T)n Simple_repeat Simple_repeat 1 22 0 1591 250 160 20 chr4 16018905 16019781 -186308566 - L2 LINE L2 -3 3310 2298 586 257 26 66 chr4 16019782 16020008 -186308339 - MIR SINE MIR -37 225 9 216 0 0 0 chr4 16020011 16020035 -186308312 + (CA)n Simple_repeat Simple_repeat 2 25 0 491 295 77 22 chr4 16020086 16020269 -186308078 - MLT1K LTR MaLR -368 220 28 2996 167 56 12 chr4 16020679 16021253 -186307094 - L1MC1 LINE L1 -11 6322 5724 328 252 59 52 chr4 16021400 16021535 -186306812 - L1ME4a LINE L1 -3 6118 5983 24 0 0 0 chr4 16021680 16021704 -186306643 + AT_rich Low_complexity Low_complexity 1 24 0 2220 149 58 28 chr4 16021886 16022384 -186305963 + L1MA9 LINE L1 5692 6081 -231 30 69 0 0 chr4 16022444 16022502 -186305845 + AT_rich Low_complexity Low_complexity 1 58 0 285 281 11 22 chr4 16022580 16022669 -186305678 + (TATG)n Simple_repeat Simple_repeat 1 88 0 2202 87 33 3 chr4 16022691 16022990 -186305357 - AluSg SINE Alu -2 308 1 199 256 0 77 chr4 16023067 16023145 -186305202 - L2 LINE L2 0 3272 3201 1388 111 0 5 chr4 16023659 16023877 -186304470 + AluSp SINE Alu 98 314 0 1563 170 35 28 chr4 16023917 16024229 -186304118 + AluJb SINE Alu 1 314 0 258 161 218 23 chr4 16024303 16024390 -186303957 - L2 LINE L2 0 3313 3210 2678 189 51 8 chr4 16024390 16024981 -186303366 + L1MB7 LINE L1 5560 6175 -9 342 275 12 31 chr4 16025272 16025432 -186302915 + GA-rich Low_complexity Low_complexity 2 158 0 393 328 0 0 chr4 16025432 16025563 -186302784 - MIR SINE MIR -10 252 122 228 339 27 9 chr4 16025815 16025927 -186302420 - MIR SINE MIR -138 124 11 1205 192 51 25 chr4 16026112 16026416 -186301931 + L1MA7 LINE L1 5903 6229 -73 1907 161 0 0 chr4 16026464 16026769 -186301578 + L1PA16 LINE L1 5858 6162 -4 641 169 7 0 chr4 16026769 16026898 -186301449 + L1MA7 LINE L1 6155 6291 0 2258 96 0 0 chr4 16026968 16027273 -186301074 + AluSp SINE Alu 3 307 0 791 238 112 41 chr4 16027527 16028094 -186300253 - MER34C LTR ERV1 0 720 1 1223 223 99 60 chr4 16029333 16029472 -186298875 + L1MC4a LINE L1 5589 5721 -2087 2383 100 0 0 chr4 16029472 16029781 -186298566 + AluSg SINE Alu 2 310 0 1223 223 99 60 chr4 16029781 16030107 -186298240 + L1MC4a LINE L1 5721 6072 -1736 308 158 40 89 chr4 16031091 16031192 -186297155 + LTR33 LTR ERVL 423 518 -3 247 242 67 0 chr4 16031803 16031968 -186296379 + (TTTA)n Simple_repeat Simple_repeat 4 179 0 964 286 140 22 chr4 16032049 16032258 -186296089 + L2 LINE L2 2741 2924 -389 2027 96 4 0 chr4 16032258 16032518 -186295829 + AluSp SINE Alu 39 299 -14 964 286 140 22 chr4 16032518 16032821 -186295526 + L2 LINE L2 2924 3313 0 379 203 12 18 chr4 16033134 16033297 -186295050 + (TA)n Simple_repeat Simple_repeat 1 162 0 228 167 62 73 chr4 16033297 16033393 -186294954 + L1MA5A LINE L1 6070 6164 -133 246 311 44 44 chr4 16033869 16033959 -186294388 + L2 LINE L2 3136 3225 -47 1501 196 3 27 chr4 16034017 16034349 -186293998 - MER33 DNA MER1_type 0 324 1 578 98 0 0 chr4 16034501 16034583 -186293764 + L1MA1 LINE L1 5867 5948 -354 1650 118 0 0 chr4 16034584 16034805 -186293542 + AluSq SINE Alu 2 222 -91 229 122 0 0 chr4 16034805 16034846 -186293501 + AluSq SINE Alu 259 299 -4 2487 110 14 22 chr4 16034846 16035211 -186293136 + L1MA1 LINE L1 5935 6296 -6 192 77 0 0 chr4 16035495 16035521 -186292826 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1212 297 36 8 chr4 16035574 16035961 -186292386 + LTR16C LTR ERVL 2 399 -92 1032 316 76 62 chr4 16036191 16036931 -186291416 + HERV16 LTR ERVL 365 1126 -3870 1684 173 7 23 chr4 16036931 16037237 -186291110 + AluJo SINE Alu 1 301 -11 1032 316 76 62 chr4 16037237 16037544 -186290803 + HERV16 LTR ERVL 1126 1427 -3569 648 279 32 16 chr4 16037863 16038053 -186290294 + HERV16 LTR ERVL 1895 2087 -3677 1656 308 84 37 chr4 16038106 16038215 -186290132 + HERV16 LTR ERVL 2206 2308 -3456 1303 203 125 28 chr4 16038215 16038574 -186289773 + MSTD LTR MaLR 3 396 0 1656 308 84 37 chr4 16038574 16039360 -186288987 + HERV16 LTR ERVL 2308 3143 -2621 2161 189 52 61 chr4 16039416 16040052 -186288295 - MER45R DNA AcHobo 0 1581 952 665 203 89 19 chr4 16040057 16040215 -186288132 + MER63 DNA MER1_type 892 1060 0 2143 124 32 42 chr4 16040312 16040691 -186287656 + THE1C LTR MaLR 1 375 0 1298 154 24 8 chr4 16041701 16041947 -186286400 - MER45R DNA AcHobo -620 961 712 925 238 57 51 chr4 16041993 16042308 -186286039 + LTR16C LTR ERVL 175 491 0 2451 148 20 36 chr4 16042315 16042754 -186285593 - MSTB1 LTR MaLR 0 432 1 1194 211 64 0 chr4 16043053 16043328 -186285019 - MER58B DNA MER1_type -12 329 37 254 233 50 17 chr4 16043875 16043935 -186284412 - MER58B DNA MER1_type -36 305 244 427 222 44 0 chr4 16043969 16044059 -186284288 + MER58B DNA MER1_type 244 337 -4 23 68 0 0 chr4 16044232 16044276 -186284071 + AT_rich Low_complexity Low_complexity 1 44 0 281 308 29 122 chr4 16044314 16044486 -186283861 + L2 LINE L2 2929 3084 -188 1722 156 3 14 chr4 16044553 16044836 -186283511 + AluSx SINE Alu 1 280 -32 423 214 0 0 chr4 16044888 16045019 -186283328 + CT-rich Low_complexity Low_complexity 1 131 0 450 0 0 0 chr4 16045313 16045363 -186282984 + (CA)n Simple_repeat Simple_repeat 2 51 0 207 0 0 0 chr4 16046318 16046341 -186282006 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 1852 153 6 26 chr4 16046611 16046924 -186281423 - L1MC1 LINE L1 0 6333 6027 183 318 15 30 chr4 16047316 16047382 -186280965 - L2 LINE L2 -1 3312 3248 516 282 20 0 chr4 16047488 16047637 -186280710 + MIR SINE MIR 85 236 -26 585 293 105 21 chr4 16047718 16047957 -186280390 - MIR SINE MIR -2 260 2 1965 132 35 0 chr4 16048292 16048580 -186279767 - AluSx SINE Alu -14 298 1 253 268 72 58 chr4 16048623 16048761 -186279586 - L2 LINE L2 -555 2759 2620 239 294 88 57 chr4 16049695 16049889 -186278458 - L2 LINE L2 -213 3059 2860 1806 172 76 11 chr4 16050078 16050432 -186277915 + LOR1a LTR ERV1 1 377 -120 30 0 0 0 chr4 16050432 16050462 -186277885 + AT_rich Low_complexity Low_complexity 1 30 0 239 214 29 14 chr4 16050507 16050577 -186277770 - L1ME LINE L1 -252 5869 5799 * 1486 226 55 30 chr4 16050565 16051003 -186277344 - L1ME1 LINE L1 -20 6146 5703 1820 126 114 6 chr4 16051038 16051350 -186276997 + MSTA LTR MaLR 1 346 -82 231 235 0 0 chr4 16051350 16051401 -186276946 + LTR30 LTR ERV1 2 52 -670 1621 98 197 203 chr4 16051401 16052090 -186276257 + pTR5 LTR ERV1 57 556 -158 582 101 0 101 chr4 16052123 16052222 -186276125 + MSTA LTR MaLR 340 428 0 2225 109 3 0 chr4 16052299 16052593 -186275754 + AluSq SINE Alu 1 295 -18 413 299 48 7 chr4 16054338 16054485 -186273862 - L1MC4a LINE L1 -1914 5894 5742 1567 187 0 18 chr4 16055436 16055741 -186272606 - AluJb SINE Alu 0 306 7 30 45 0 0 chr4 16055763 16055807 -186272540 + AT_rich Low_complexity Low_complexity 1 44 0 2012 139 7 10 chr4 16055971 16056272 -186272075 + AluSx SINE Alu 1 300 -12 1038 180 0 6 chr4 16056292 16056475 -186271872 + AluJb SINE Alu 130 311 -1 578 307 95 45 chr4 16056977 16057440 -186270907 - L1ME LINE L1 -297 5824 5339 261 341 110 16 chr4 16057728 16057910 -186270437 + MIR SINE MIR 55 253 -9 1071 54 0 0 chr4 16057916 16058045 -186270302 + AluSg/x SINE Alu 172 300 -12 234 185 0 56 chr4 16058462 16058516 -186269831 + LTR67 LTR ERVL 1 51 -506 285 98 0 0 chr4 16058550 16058591 -186269756 + (TTCA)n Simple_repeat Simple_repeat 2 42 0 374 282 0 57 chr4 16058592 16058716 -186269631 - L2 LINE L2 -25 3288 3172 1215 139 4 94 chr4 16058724 16058969 -186269378 + AluJb SINE Alu 85 307 -5 312 230 95 40 chr4 16059657 16059783 -186268564 + MIR SINE MIR 40 172 -90 660 251 284 22 chr4 16059806 16060165 -186268182 - MLT1J LTR MaLR -45 466 14 231 36 0 0 chr4 16060184 16060212 -186268135 + (TC)n Simple_repeat Simple_repeat 2 29 0 2192 107 7 3 chr4 16060214 16060512 -186267835 - AluSq SINE Alu -14 299 1 623 208 66 56 chr4 16061040 16061237 -186267110 + L1ME LINE L1 5463 5661 -460 817 250 45 45 chr4 16061348 16061700 -186266647 - SVA Other Other -573 813 462 2053 90 3 40 chr4 16063508 16063809 -186264538 + AluY SINE Alu 1 290 -21 569 141 0 0 chr4 16064324 16064402 -186263945 + AluJ/FLAM SINE Alu 2 79 -233 473 264 138 25 chr4 16066122 16066281 -186262066 + MER5B DNA MER1_type 1 177 -1 237 334 85 33 chr4 16067616 16067779 -186260568 - MIR SINE MIR -67 141 19 21 36 0 0 chr4 16068343 16068371 -186259976 + AT_rich Low_complexity Low_complexity 1 28 0 340 248 97 35 chr4 16068612 16068757 -186259590 - MIR SINE MIR -58 204 51 245 291 100 36 chr4 16068806 16068916 -186259431 + MIR3 SINE MIR 62 178 -30 550 119 12 0 chr4 16069136 16069147 -186259200 + AluJ/FRAM SINE Alu 224 233 -79 1514 96 15 0 chr4 16069147 16069345 -186259002 + AluSg1 SINE Alu 1 201 -108 550 119 12 0 chr4 16069345 16069417 -186258930 + AluJ/FRAM SINE Alu 233 308 -4 406 279 91 30 chr4 16069568 16069765 -186258582 - MER112 DNA MER1_type -1 259 51 858 201 39 6 chr4 16069821 16070000 -186258347 - MER20 DNA MER1_type -5 214 30 351 299 123 0 chr4 16070165 16070319 -186258028 + MIR SINE MIR 59 231 -31 2088 93 29 39 chr4 16070465 16070777 -186257570 - AluSc SINE Alu 0 309 1 4361 151 40 1 chr4 16071051 16071784 -186256563 - L1MA9 LINE L1 0 6312 5552 685 209 143 61 chr4 16071876 16071918 -186256429 - MIR SINE MIR -44 218 181 1771 151 10 20 chr4 16071918 16072210 -186256137 + AluJo SINE Alu 1 289 -23 685 209 143 61 chr4 16072210 16072363 -186255984 - MIR SINE MIR -81 181 7 1242 170 154 51 chr4 16072574 16072827 -186255520 + MER2 DNA MER2_type 1 293 -51 2441 103 0 0 chr4 16072827 16073139 -186255208 - AluSx SINE Alu 0 312 1 1242 170 154 51 chr4 16073139 16073197 -186255150 + MER2 DNA MER2_type 293 344 0 2532 26 10 20 chr4 16073231 16073537 -186254810 + L1PA4 LINE L1 5853 6155 0 1494 197 35 14 chr4 16073731 16074035 -186254312 + MER58B DNA MER1_type 29 341 0 542 219 12 98 chr4 16074037 16074201 -186254146 + L2 LINE L2 3151 3300 -13 21 36 0 0 chr4 16074220 16074248 -186254099 + AT_rich Low_complexity Low_complexity 1 28 0 364 272 34 48 chr4 16074281 16074355 -186253992 - MIR SINE MIR -86 176 103 2311 99 0 3 chr4 16074355 16074658 -186253689 + AluSg SINE Alu 1 302 -8 364 272 34 48 chr4 16074658 16074730 -186253617 - MIR SINE MIR -159 103 32 1811 211 62 27 chr4 16075686 16076136 -186252211 - MER31B LTR ERV1 0 466 1 1531 118 57 0 chr4 16076381 16076593 -186251754 + AluSq SINE Alu 7 230 -83 239 333 79 45 chr4 16077213 16077504 -186250843 - L2 LINE L2 -939 2375 2075 * 294 306 126 46 chr4 16077450 16077545 -186250802 + L3 LINE CR1 1175 1261 -316 1945 134 31 10 chr4 16077545 16077836 -186250511 + AluSx SINE Alu 1 297 -15 294 306 126 46 chr4 16077836 16078001 -186250346 + L3 LINE CR1 1261 1456 -121 1871 138 0 4 chr4 16078189 16078465 -186249882 - AluSx SINE Alu -36 276 2 2669 142 11 36 chr4 16078484 16078928 -186249419 - Tigger2a DNA MER2_type 0 434 2 24 32 0 0 chr4 16079033 16079064 -186249283 + AT_rich Low_complexity Low_complexity 1 31 0 1710 181 3 16 chr4 16079867 16080171 -186248176 + AluJo SINE Alu 1 300 -12 318 237 57 144 chr4 16080341 16080535 -186247812 + MER5B DNA MER1_type 2 178 0 208 320 105 70 chr4 16080550 16080722 -186247625 - MER5B DNA MER1_type 0 178 1 2238 111 3 0 chr4 16081022 16081329 -186247018 - AluSp SINE Alu -5 308 1 293 216 150 39 chr4 16083142 16083295 -186245052 + L1MC5 LINE L1 7727 7896 -65 36 70 0 0 chr4 16083349 16083420 -186244927 + AT_rich Low_complexity Low_complexity 1 71 0 2255 120 3 0 chr4 16083690 16083999 -186244348 - AluSq SINE Alu -3 310 1 2186 102 10 3 chr4 16084126 16084421 -186243926 - AluSq SINE Alu -16 297 1 24 32 0 0 chr4 16084600 16084631 -186243716 + AT_rich Low_complexity Low_complexity 1 31 0 1187 171 0 45 chr4 16084753 16084804 -186243543 + AluJb SINE Alu 87 139 -173 2420 84 3 3 chr4 16084804 16085115 -186243232 + AluSx SINE Alu 1 311 -1 1187 171 0 45 chr4 16085115 16085285 -186243062 + AluJb SINE Alu 139 298 -14 1053 191 53 14 chr4 16085327 16085536 -186242811 + MER20 DNA MER1_type 2 218 -1 1688 154 3 30 chr4 16085569 16085867 -186242480 + AluSx SINE Alu 1 290 -22 11143 55 5 2 chr4 16086453 16088549 -186239798 + L1PA6 LINE L1 4041 6150 -4 26 0 0 0 chr4 16088952 16088978 -186239369 + AT_rich Low_complexity Low_complexity 1 26 0 578 306 65 48 chr4 16089802 16090093 -186238254 - L2 LINE L2 -19 3294 2999 618 142 0 19 chr4 16090433 16090539 -186237808 + L1MA4 LINE L1 6197 6300 0 357 62 0 0 chr4 16090666 16090714 -186237633 + (TG)n Simple_repeat Simple_repeat 2 49 0 2400 96 0 0 chr4 16092138 16092439 -186235908 + AluSg SINE Alu 1 301 -9 21 71 0 0 chr4 16092701 16092743 -186235604 + AT_rich Low_complexity Low_complexity 1 42 0 1096 164 0 0 chr4 16096028 16096187 -186232160 - FRAM SINE Alu -7 159 1 1966 93 64 4 chr4 16096215 16096495 -186231852 - AluSg SINE Alu -13 297 1 764 281 35 4 chr4 16096627 16096858 -186231489 + L1ME3A LINE L1 5926 6163 -7 185 214 71 0 chr4 16097373 16097415 -186230932 + MIR SINE MIR 218 262 0 412 150 124 93 chr4 16098335 16098528 -186229819 - L1ME4a LINE L1 -41 6080 5882 219 36 0 0 chr4 16098555 16098583 -186229764 + (CA)n Simple_repeat Simple_repeat 2 29 0 3006 101 12 0 chr4 16098723 16099140 -186229207 + MER83 LTR ERV1 1 422 -26 316 249 18 91 chr4 16099159 16099324 -186229023 - L1ME4a LINE L1 -439 5682 5530 1988 110 0 15 chr4 16099748 16100020 -186228327 + AluSq SINE Alu 1 268 -45 266 276 121 29 chr4 16101616 16101790 -186226557 + L1ME LINE L1 5477 5666 -500 1186 265 122 3 chr4 16101798 16102160 -186226187 - MLT1I LTR MaLR -2 407 3 284 260 53 65 chr4 16102170 16102339 -186226008 + L1ME LINE L1 5687 5853 -268 22 0 0 0 chr4 16102794 16102816 -186225531 + AT_rich Low_complexity Low_complexity 1 22 0 2019 161 0 0 chr4 16102824 16103135 -186225212 + AluSx SINE Alu 1 311 -1 678 313 16 0 chr4 16103156 16103338 -186225009 + MIR SINE MIR 4 188 -74 2158 88 81 0 chr4 16103344 16103629 -186224718 + AluSc SINE Alu 1 308 -1 343 324 97 0 chr4 16104705 16104850 -186223497 - MIR SINE MIR -4 258 100 3480 131 63 0 chr4 16105672 16105738 -186222609 + L1MA6 LINE L1 5707 5767 -533 2227 129 0 0 chr4 16105738 16106040 -186222307 + AluSx SINE Alu 1 302 -10 3480 131 63 0 chr4 16106040 16106532 -186221815 + L1MA6 LINE L1 5767 6300 0 21 0 0 0 chr4 16106532 16106553 -186221794 + AT_rich Low_complexity Low_complexity 1 21 0 1607 177 25 7 chr4 16106560 16106843 -186221504 + AluJo SINE Alu 1 288 -24 189 0 0 0 chr4 16106861 16106882 -186221465 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 1112 258 123 47 chr4 16107367 16107899 -186220448 + L2 LINE L2 2741 3313 0 1956 139 3 7 chr4 16107936 16108231 -186220116 - AluSx SINE Alu -18 294 1 277 282 161 32 chr4 16108597 16108721 -186219626 + MIR SINE MIR 13 152 -110 637 208 161 10 chr4 16108721 16108888 -186219459 + MIR SINE MIR 3 190 -36 245 207 46 0 chr4 16108888 16108975 -186219372 + L1MC4 LINE L1 6613 6703 -1339 216 0 0 0 chr4 16108975 16108999 -186219348 + (GA)n Simple_repeat Simple_repeat 2 25 0 193 272 25 37 chr4 16109063 16109144 -186219203 + MIR SINE MIR 157 236 -26 461 282 43 31 chr4 16109613 16109776 -186218571 + MIR SINE MIR 48 212 -50 253 343 105 19 chr4 16109917 16110022 -186218325 + L2 LINE L2 3151 3264 -8 2011 144 150 5 chr4 16110647 16111021 -186217326 + MSTA LTR MaLR 1 428 0 226 230 40 27 chr4 16112285 16112433 -186215914 + (CA)n Simple_repeat Simple_repeat 1 150 0 233 250 41 23 chr4 16112694 16112866 -186215481 + (CA)n Simple_repeat Simple_repeat 1 175 0 320 234 19 32 chr4 16113042 16113200 -186215147 + (CA)n Simple_repeat Simple_repeat 2 157 0 27 29 0 0 chr4 16113580 16113614 -186214733 + GC_rich Low_complexity Low_complexity 1 34 0 207 152 0 0 chr4 16113614 16113660 -186214687 + (CAG)n Simple_repeat Simple_repeat 1 46 0 1685 149 6 37 chr4 16113844 16114166 -186214181 + AluJb SINE Alu 1 312 0 270 316 53 45 chr4 16114412 16114525 -186213822 - MIR SINE MIR -45 217 101 1667 207 30 9 chr4 16114525 16114859 -186213488 - MER2 DNA MER2_type -3 341 1 270 316 53 45 chr4 16114859 16114878 -186213469 - MIR SINE MIR -161 101 84 2496 60 0 0 chr4 16114937 16115236 -186213111 + AluY SINE Alu 1 299 -12 358 203 14 0 chr4 16115441 16115515 -186212832 - HAL1 LINE L1 -109 2398 2324 2032 113 6 30 chr4 16115515 16115869 -186212478 - MER4A LTR ERV1 0 664 261 493 75 12 50 chr4 16115869 16115949 -186212398 - MER4A LTR ERV1 -566 98 22 2020 153 67 28 chr4 16115962 16116129 -186212218 + MSTA LTR MaLR 23 182 -246 2170 82 30 33 chr4 16116129 16116433 -186211914 + AluSc SINE Alu 1 303 -6 2020 153 67 28 chr4 16116433 16116656 -186211691 + MSTA LTR MaLR 182 428 0 228 211 18 0 chr4 16116711 16116768 -186211579 - HAL1 LINE L1 -414 2093 2036 * 1367 84 31 0 chr4 16116763 16116954 -186211393 + THE1A-int LTR MaLR 1384 1580 0 2776 59 0 85 chr4 16116954 16117342 -186211005 + THE1A LTR MaLR 1 355 0 1370 200 100 147 chr4 16117343 16118091 -186210256 - HAL1 LINE L1 -748 1759 1065 342 45 0 0 chr4 16118091 16118135 -186210212 + (TA)n Simple_repeat Simple_repeat 1 44 0 1370 200 100 147 chr4 16118135 16118352 -186209995 - HAL1 LINE L1 -1442 1065 839 1645 107 18 14 chr4 16118387 16118676 -186209671 - THE1B LTR MaLR -1 374 1 1017 266 146 71 chr4 16118680 16118823 -186209524 - HAL1 LINE L1 -1702 805 674 2483 84 0 7 chr4 16118823 16119133 -186209214 - AluY SINE Alu -3 308 1 1017 266 146 71 chr4 16119133 16119655 -186208692 - HAL1 LINE L1 -1833 674 90 180 152 0 0 chr4 16119798 16119831 -186208516 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 495 169 22 0 chr4 16119831 16119920 -186208427 + L1MC5 LINE L1 7307 7397 -564 1014 158 4 61 chr4 16119935 16120064 -186208283 - MER63 DNA MER1_type -25 1036 924 2320 91 0 3 chr4 16120064 16120362 -186207985 + AluY SINE Alu 1 297 -14 1014 158 4 61 chr4 16120362 16120460 -186207887 - MER63 DNA MER1_type -137 924 822 547 200 62 0 chr4 16120488 16120618 -186207729 + L1MB8 LINE L1 5129 5266 -880 407 69 222 0 chr4 16120620 16120692 -186207655 + MER30 DNA MER1_type 1 88 -142 295 138 103 0 chr4 16120708 16120766 -186207581 + MER30 DNA MER1_type 56 119 -111 869 246 131 21 chr4 16120784 16121121 -186207226 + MER50 LTR ERV1 12 385 -349 5415 238 13 22 chr4 16121122 16122368 -186205979 + HERVI LTR ERV1 6549 7783 -2 1315 207 151 54 chr4 16122394 16122877 -186205470 + LTR10B LTR ERV1 13 542 -5 677 224 105 6 chr4 16122897 16123244 -186205103 + L1MB8 LINE L1 5284 5939 -239 2298 210 53 14 chr4 16123660 16124146 -186204201 + MLT1D LTR MaLR 1 505 0 3528 203 69 127 chr4 16124358 16124994 -186203353 + MLT1D-int LTR MaLR 27 536 -835 334 148 0 0 chr4 16124994 16125055 -186203292 - L1MB3 LINE L1 -2 6181 6121 3528 203 69 127 chr4 16125055 16125843 -186202504 + MLT1D-int LTR MaLR 536 1368 -3 565 152 22 11 chr4 16125848 16125940 -186202407 + MLT1D LTR MaLR 5 97 -408 521 298 60 24 chr4 16125949 16126197 -186202150 - LTR40b LTR ERVL -81 381 125 218 231 0 58 chr4 16126802 16126854 -186201493 - L2 LINE L2 0 3272 3224 1773 172 0 10 chr4 16127055 16127345 -186201002 - AluJo SINE Alu -23 289 3 668 297 32 0 chr4 16127386 16127571 -186200776 + L2 LINE L2 2674 2864 -450 541 252 87 34 chr4 16127540 16127746 -186200601 + L2 LINE L2 3092 3308 -5 * 29 28 0 0 chr4 16127747 16127783 -186200564 + AT_rich Low_complexity Low_complexity 1 36 0 363 309 26 27 chr4 16128513 16128832 -186199515 - Charlie1 DNA MER1_type -843 1918 1424 383 262 63 0 chr4 16130220 16130346 -186198001 + MER112 DNA MER1_type 127 260 0 1414 216 102 63 chr4 16131153 16131690 -186196657 + MER74A LTR ERVL 1 558 0 484 299 149 9 chr4 16133443 16133664 -186194683 - L2 LINE L2 -1790 1524 1273 196 353 98 0 chr4 16133975 16134097 -186194250 + L2 LINE L2 2897 3030 -242 197 210 113 16 chr4 16134103 16134165 -186194182 - L2 LINE L2 -3 3269 3202 228 250 74 40 chr4 16134165 16134313 -186194034 + L1ME LINE L1 5768 5920 -244 230 256 13 0 chr4 16135858 16135936 -186192411 + (TA)n Simple_repeat Simple_repeat 1 79 0 2202 79 3 26 chr4 16136145 16136450 -186191897 - AluSx SINE Alu -14 298 1 650 269 120 31 chr4 16136587 16137037 -186191310 - L1MC4a LINE L1 -1786 6022 5533 26 0 0 0 chr4 16137289 16137315 -186191032 + GC_rich Low_complexity Low_complexity 1 26 0 2260 83 38 0 chr4 16137554 16137842 -186190505 + AluSc SINE Alu 1 299 -10 1845 214 88 102 chr4 16138885 16139650 -186188697 - MER21B LTR ERV1 -109 754 1 286 118 53 26 chr4 16140123 16140199 -186188148 - L1MC5 LINE L1 -55 7906 7829 612 266 36 30 chr4 16140298 16140629 -186187718 - L1MC5 LINE L1 -321 7640 7308 335 298 19 29 chr4 16140795 16140899 -186187448 - MIR3 SINE MIR -48 160 58 2306 110 0 3 chr4 16141024 16141332 -186187015 + AluSq SINE Alu 1 307 -6 2428 75 0 0 chr4 16141956 16142250 -186186097 + AluY SINE Alu 1 294 -17 21 0 0 0 chr4 16142680 16142701 -186185646 + AT_rich Low_complexity Low_complexity 1 21 0 1269 265 65 8 chr4 16142892 16143277 -186185070 + L1ME1 LINE L1 87 493 -5903 505 203 225 0 chr4 16143282 16143420 -186184927 + Tigger3(Golem) DNA MER2_type 1 169 -2860 1832 170 7 3 chr4 16143446 16143746 -186184601 - AluJb SINE Alu -11 301 1 3106 125 94 28 chr4 16143746 16144585 -186183762 + Tigger3(Golem) DNA MER2_type 296 3028 -1 2116 241 161 34 chr4 16144597 16145334 -186183013 + L1ME1 LINE L1 512 1154 -5242 822 135 0 8 chr4 16145334 16145460 -186182887 + FLAM_C SINE Alu 3 127 -6 2116 241 161 34 chr4 16145460 16145682 -186182665 + L1ME1 LINE L1 1154 1346 -5050 2430 98 0 0 chr4 16145682 16145989 -186182358 + AluSx SINE Alu 1 307 -5 2116 241 161 34 chr4 16145989 16146126 -186182221 + L1ME1 LINE L1 1346 1749 -4647 230 238 0 60 chr4 16146141 16146225 -186182122 + MER58 DNA MER1_type 37 115 -2305 649 210 97 5 chr4 16146328 16146523 -186181824 + L1ME1 LINE L1 2279 2491 -3905 936 213 82 28 chr4 16146529 16146811 -186181536 + L1ME1 LINE L1 5611 5907 -328 303 231 22 55 chr4 16147258 16147349 -186180998 + L1MC5 LINE L1 7825 7912 -49 316 135 77 0 chr4 16147361 16147413 -186180934 - Alu SINE Alu -11 291 236 1342 180 75 7 chr4 16147481 16147787 -186180560 + MER7A DNA MER2_type 13 337 -9 201 191 29 29 chr4 16148378 16148446 -186179901 + A-rich Low_complexity Low_complexity 4 71 0 2281 75 4 0 chr4 16148845 16149126 -186179221 - AluSp SINE Alu -15 298 17 207 242 30 45 chr4 16149581 16149647 -186178700 - MIR SINE MIR -10 252 188 777 155 6 25 chr4 16149896 16150057 -186178290 - L1MA7 LINE L1 -6 6285 6128 1061 178 56 5 chr4 16150070 16150267 -186178080 - AluJb SINE Alu -19 293 87 1043 127 68 14 chr4 16150267 16150487 -186177860 - L1MA7 LINE L1 -161 6130 5899 1798 168 0 3 chr4 16150487 16150785 -186177562 - AluJo SINE Alu -15 297 1 21 0 0 0 chr4 16150864 16150885 -186177462 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 16151220 16151249 -186177098 + AT_rich Low_complexity Low_complexity 1 29 0 2476 84 0 3 chr4 16152043 16152351 -186175996 + AluSq SINE Alu 1 307 -6 638 306 50 22 chr4 16152770 16152992 -186175355 + MIR SINE MIR 2 229 -33 403 269 29 0 chr4 16153203 16153307 -186175040 - MIR SINE MIR -28 234 128 236 239 73 73 chr4 16153367 16153476 -186174871 - MIR SINE MIR -142 120 12 187 238 0 0 chr4 16153590 16153632 -186174715 - MIR SINE MIR -4 258 217 440 290 71 7 chr4 16154416 16154571 -186173776 - MIR SINE MIR -16 246 82 1412 226 41 85 chr4 16154687 16155249 -186173098 + MLT1F LTR MaLR 6 542 0 298 235 0 0 chr4 16155257 16155325 -186173022 + MLT1J LTR MaLR 425 492 -19 207 323 0 0 chr4 16155411 16155476 -186172871 - MIR3 SINE MIR -23 185 121 * 226 202 275 0 chr4 16155467 16155576 -186172771 - MIR SINE MIR -3 259 121 2121 122 7 0 chr4 16155811 16156105 -186172242 - AluSx SINE Alu -16 296 1 295 306 0 31 chr4 16156258 16156356 -186171991 - MIR SINE MIR -68 140 46 1826 164 7 17 chr4 16156520 16156819 -186171528 + AluJo SINE Alu 1 296 -16 2852 102 39 0 chr4 16158142 16158554 -186169793 - MSTC LTR MaLR 0 428 1 331 274 186 0 chr4 16159548 16159650 -186168697 - L2 LINE L2 0 3313 3193 182 318 27 64 chr4 16159937 16160047 -186168300 + MIR SINE MIR 24 129 -133 610 256 149 5 chr4 16160098 16160293 -186168054 - MIR SINE MIR -39 223 1 251 315 45 11 chr4 16160390 16160479 -186167868 - L2 LINE L2 -19 3253 3162 752 245 90 5 chr4 16212727 16212939 -186115408 + MIR SINE MIR 30 259 -3 554 292 103 17 chr4 16213462 16213695 -186114652 - MIR SINE MIR -3 259 7 211 219 0 0 chr4 16213954 16213995 -186114352 + A-rich Low_complexity Low_complexity 5 45 0 21 0 0 0 chr4 16214858 16214879 -186113468 + AT_rich Low_complexity Low_complexity 1 21 0 374 266 81 8 chr4 16215169 16215293 -186113054 + L2 LINE L2 3181 3313 0 1763 156 0 34 chr4 16215402 16215697 -186112650 + AluJb SINE Alu 1 285 -27 234 0 0 0 chr4 16215704 16215730 -186112617 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 186 43 0 0 chr4 16215840 16215863 -186112484 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 197 267 111 33 chr4 16216146 16216236 -186112111 - MIR SINE MIR -130 132 36 347 278 82 76 chr4 16216935 16217226 -186111121 + MLT1K LTR MaLR 296 588 0 274 203 54 14 chr4 16219609 16219683 -186108664 + MIR SINE MIR 72 148 -114 1848 169 10 3 chr4 16219775 16220077 -186108270 - AluJb SINE Alu -8 304 1 266 276 46 11 chr4 16220156 16220243 -186108104 - MIR SINE MIR -162 100 11 1871 151 7 10 chr4 16220852 16221143 -186107204 - AluSx SINE Alu -22 290 1 297 289 15 81 chr4 16221576 16221713 -186106634 - MIR SINE MIR -57 151 23 273 209 149 0 chr4 16221917 16221984 -186106363 + MIR SINE MIR 113 189 -73 382 264 20 47 chr4 16222610 16222758 -186105589 + MIR SINE MIR 70 213 -49 336 255 19 38 chr4 16222736 16222842 -186105505 - L2 LINE L2 0 3313 3210 * 462 261 33 61 chr4 16222984 16223229 -186105118 - L2 LINE L2 -160 3153 2916 362 205 12 12 chr4 16223235 16223318 -186105029 + MIR SINE MIR 180 262 0 449 298 20 33 chr4 16223479 16223630 -186104717 - MIR SINE MIR -75 187 39 605 237 79 91 chr4 16223665 16224158 -186104189 + L1MEd LINE L1 665 1151 -4968 599 318 28 14 chr4 16224182 16224396 -186103951 - L1ME LINE L1 -382 5739 5523 1996 111 0 0 chr4 16225720 16225991 -186102356 - AluSx SINE Alu -19 293 23 1082 207 128 20 chr4 16226304 16226696 -186101651 - L1MC5 LINE L1 -48 7913 7480 201 316 0 32 chr4 16226979 16227074 -186101273 - MIR SINE MIR -7 255 164 2226 113 6 0 chr4 16227464 16227775 -186100572 - AluSp SINE Alu 0 313 1 354 143 79 0 chr4 16227921 16227984 -186100363 - MER20 DNA MER1_type -35 184 117 2407 126 27 8 chr4 16227984 16228358 -186099989 + L1MA4 LINE L1 5915 6295 -5 2006 143 0 3 chr4 16229414 16229707 -186098640 - AluJo SINE Alu -20 292 1 22 0 0 0 chr4 16230657 16230679 -186097668 + AT_rich Low_complexity Low_complexity 1 22 0 404 217 0 0 chr4 16232969 16233038 -186095309 + MER117 DNA MER1_type 45 113 -84 1715 201 83 47 chr4 16233279 16233726 -186094621 + MLT1C LTR MaLR 1 463 -4 26 0 0 0 chr4 16234179 16234205 -186094142 + AT_rich Low_complexity Low_complexity 1 26 0 1918 116 32 25 chr4 16234211 16234495 -186093852 - AluSx SINE Alu -26 286 1 886 146 6 30 chr4 16235432 16235596 -186092751 - L1MB4 LINE L1 -6 6174 6015 519 241 28 0 chr4 16236250 16236358 -186091989 - MER5A DNA MER1_type -18 171 61 25 0 0 0 chr4 16236361 16236386 -186091961 + AT_rich Low_complexity Low_complexity 1 25 0 311 149 176 0 chr4 16236405 16236479 -186091868 + MER6 DNA MER2_type 611 697 -168 866 156 0 15 chr4 16236481 16236616 -186091731 - AluJo SINE Alu -178 134 2 419 186 14 0 chr4 16236618 16236688 -186091659 - MER5A DNA MER1_type -115 74 4 29 28 0 0 chr4 16236723 16236759 -186091588 + AT_rich Low_complexity Low_complexity 1 36 0 314 138 215 0 chr4 16237186 16237251 -186091096 - MER116 DNA Mariner -1 79 1 534 259 74 78 chr4 16237685 16237928 -186090419 + MIR SINE MIR 18 259 -3 207 286 0 0 chr4 16238118 16238167 -186090180 + MIR SINE MIR 183 231 -31 696 253 82 12 chr4 16238670 16238901 -186089446 - MIR SINE MIR 0 262 18 23 0 0 0 chr4 16239044 16239067 -186089280 + AT_rich Low_complexity Low_complexity 1 23 0 2444 42 3 14 chr4 16239067 16239355 -186088992 - L1PA6 LINE L1 -7 6147 5863 231 318 24 0 chr4 16239523 16239608 -186088739 + MER103 DNA DNA 27 113 -53 323 286 0 0 chr4 16240165 16240263 -186088084 + GA-rich Low_complexity Low_complexity 4 101 0 270 320 100 0 chr4 16240394 16240494 -186087853 - L2 LINE L2 -10 3262 3153 262 290 100 0 chr4 16240639 16240739 -186087608 - L2 LINE L2 -10 3262 3153 884 263 118 78 chr4 16241045 16242182 -186086165 + L1ME3 LINE L1 4968 6162 0 787 268 72 4 chr4 16243370 16243605 -186084742 + MIR SINE MIR 2 252 -10 24 32 0 0 chr4 16243835 16243866 -186084481 + AT_rich Low_complexity Low_complexity 1 31 0 552 323 119 31 chr4 16243947 16244536 -186083811 - L2 LINE L2 -1034 2280 1640 36 0 0 0 chr4 16245115 16245151 -186083196 + AT_rich Low_complexity Low_complexity 1 36 0 2632 49 0 0 chr4 16245263 16245571 -186082776 + AluY SINE Alu 1 308 -3 472 15 61 30 chr4 16245573 16245639 -186082708 + L1PA4 LINE L1 6088 6155 0 182 79 0 53 chr4 16245652 16245690 -186082657 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 387 350 65 38 chr4 16245718 16246009 -186082338 + L1MC4a LINE L1 5613 5911 -1897 277 319 76 47 chr4 16246014 16246132 -186082215 - L1ME LINE L1 -316 5854 5741 1617 163 94 4 chr4 16246132 16246409 -186081938 - AluJo SINE Alu -10 302 1 277 319 76 47 chr4 16246409 16246675 -186081672 - L1ME LINE L1 -429 5741 5450 535 242 18 8 chr4 16249088 16249232 -186079115 + MIR SINE MIR 9 151 -57 2622 45 0 10 chr4 16250783 16251093 -186077254 + AluY SINE Alu 1 307 -4 2307 98 0 0 chr4 16251103 16251400 -186076947 + AluSg1 SINE Alu 1 297 -12 474 192 10 20 chr4 16251890 16251989 -186076358 + MLT1K LTR MaLR 482 579 -9 205 290 43 14 chr4 16252236 16252305 -186076042 + L2 LINE L2 3190 3260 -12 225 0 0 0 chr4 16252328 16252353 -186075994 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 2119 102 20 3 chr4 16252404 16252697 -186075650 - AluSq SINE Alu -15 298 1 1708 178 3 22 chr4 16253270 16253294 -186075053 - AluJo SINE Alu -3 309 286 255 61 0 0 chr4 16253294 16253327 -186075020 + (TATG)n Simple_repeat Simple_repeat 2 34 0 1708 178 3 22 chr4 16253327 16253617 -186074730 - AluJo SINE Alu -26 286 1 182 179 0 0 chr4 16253805 16253844 -186074503 - MIR SINE MIR -14 248 210 29 28 0 0 chr4 16255284 16255320 -186073027 + AT_rich Low_complexity Low_complexity 1 36 0 463 275 75 35 chr4 16255329 16255519 -186072828 - MIR SINE MIR -60 202 7 2595 125 5 19 chr4 16255632 16256001 -186072346 + THE1B LTR MaLR 1 364 0 10598 80 98 3 chr4 16256002 16257445 -186070902 + THE1B-int LTR MaLR 2 1580 0 2740 106 5 19 chr4 16257445 16257814 -186070533 + THE1B LTR MaLR 1 364 0 585 301 77 0 chr4 16257878 16258061 -186070286 - MIR SINE MIR -34 228 32 2628 43 7 0 chr4 16258287 16258592 -186069755 + AluY SINE Alu 1 307 -4 21 0 0 0 chr4 16259674 16259695 -186068652 + AT_rich Low_complexity Low_complexity 1 21 0 299 323 113 0 chr4 16259948 16260081 -186068266 + MIR SINE MIR 55 202 -60 307 211 154 49 chr4 16260152 16260275 -186068072 - L2 LINE L2 -1 3271 3136 599 303 22 0 chr4 16261239 16261417 -186066930 + MIR SINE MIR 25 206 -56 200 159 0 23 chr4 16261491 16261535 -186066812 + CT-rich Low_complexity Low_complexity 2 44 0 1172 241 21 0 chr4 16262088 16262329 -186066018 + MLT1F1 LTR MaLR 6 251 -316 4456 159 58 18 chr4 16262520 16262568 -186065779 - L1MB3 LINE L1 -2 6181 6136 2038 108 31 3 chr4 16262568 16262856 -186065491 - AluSx SINE Alu -16 296 1 4456 159 58 18 chr4 16262856 16263650 -186064697 - L1MB3 LINE L1 -47 6136 5305 1930 153 0 0 chr4 16264938 16265220 -186063127 - AluJb SINE Alu -30 282 1 1410 168 158 13 chr4 16265552 16265856 -186062491 + MER7A DNA MER2_type 1 346 0 2200 112 0 0 chr4 16265962 16266256 -186062091 + AluSx SINE Alu 3 296 -16 312 324 0 0 chr4 16266913 16266987 -186061360 + MIR SINE MIR 4 77 -185 299 267 81 50 chr4 16267144 16267402 -186060945 - LTR16C LTR ERVL -2 489 224 2178 209 153 12 chr4 16267432 16267993 -186060354 + LTR48B LTR ERV1 5 644 0 2367 84 0 19 chr4 16268433 16268742 -186059605 - AluSg SINE Alu -7 303 1 651 194 31 42 chr4 16269669 16269860 -186058487 - L1M4 LINE L1 -870 5276 5088 647 270 56 26 chr4 16270407 16270640 -186057707 - MIR SINE MIR -20 242 3 585 233 57 32 chr4 16271987 16272217 -186056130 + MIR SINE MIR 24 261 -1 1607 144 8 23 chr4 16272228 16272485 -186055862 - AluJo SINE Alu -25 287 35 288 161 0 0 chr4 16273107 16273169 -186055178 + A-rich Low_complexity Low_complexity 1 62 0 210 342 69 52 chr4 16273665 16273896 -186054451 - MIR SINE MIR -16 246 12 252 269 183 11 chr4 16274295 16274388 -186053959 + MER5A DNA MER1_type 18 126 -63 481 200 0 0 chr4 16275206 16275286 -186053061 + Tigger3(Golem) DNA MER2_type 1 80 -2949 240 35 0 0 chr4 16275397 16275426 -186052921 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 297 0 0 0 chr4 16275425 16275458 -186052889 + (CA)n Simple_repeat Simple_repeat 2 34 0 545 224 0 28 chr4 16275458 16275565 -186052782 + Tigger3(Golem) DNA MER2_type 2925 3028 -1 1879 197 19 8 chr4 16276089 16276460 -186051887 - L1MC1 LINE L1 -2 6331 5957 296 200 0 29 chr4 16277636 16277706 -186050641 - L1MB7 LINE L1 0 6184 6117 * 1438 201 25 0 chr4 16277679 16277963 -186050384 + L1M4 LINE L1 5302 5592 -592 402 213 57 8 chr4 16277963 16278085 -186050262 + Charlie2 DNA MER1_type 2733 2860 -2 2912 200 2 0 chr4 16278280 16278861 -186049486 - L1P LINE L1 -1316 4830 4249 416 176 22 4 chr4 16278872 16278980 -186049367 - L1P4 LINE L1 -505 5663 5558 6036 113 13 31 chr4 16278980 16280124 -186048223 + L1PA15 LINE L1 4820 5958 -207 1999 139 3 10 chr4 16280124 16280427 -186047920 + AluSx SINE Alu 1 301 -11 6036 113 13 31 chr4 16280427 16280629 -186047718 + L1PA15 LINE L1 5958 6162 -3 971 273 94 53 chr4 16281714 16281960 -186046387 - L2 LINE L2 -2 3311 3077 1466 178 35 49 chr4 16281960 16282295 -186046052 + AluJb SINE Alu 1 331 0 971 273 94 53 chr4 16282295 16282534 -186045813 - L2 LINE L2 -236 3077 2804 1666 226 59 23 chr4 16283038 16283481 -186044866 - L2 LINE L2 -528 2786 2328 1765 198 34 26 chr4 16283482 16283828 -186044519 + L1ME1 LINE L1 4989 5346 -820 2070 140 0 3 chr4 16283828 16284128 -186044219 + AluSx SINE Alu 1 299 -13 1765 198 34 26 chr4 16284128 16284417 -186043930 + L1ME1 LINE L1 5346 5631 -535 1718 187 113 28 chr4 16284418 16284841 -186043506 - LTR2B LTR ERV1 0 490 32 2034 246 23 19 chr4 16284860 16285389 -186042958 + L1ME1 LINE L1 5629 6159 -7 1705 240 73 38 chr4 16285399 16285975 -186042372 - L2 LINE L2 -975 2339 1744 7954 174 28 25 chr4 16286937 16289644 -186038703 + L1MA4 LINE L1 2622 5349 -2216 4720 130 16 0 chr4 16289624 16290387 -186037960 + L1MA4 LINE L1 6634 7408 -311 * 444 279 175 13 chr4 16290427 16290656 -186037691 - L2 LINE L2 -9 3304 3039 * 1196 276 141 25 chr4 16290654 16291307 -186037040 + L2 LINE L2 2247 2975 -339 357 292 100 8 chr4 16291514 16291644 -186036703 - MIR SINE MIR -107 155 14 826 236 50 0 chr4 16291939 16292121 -186036226 + MLT1F1 LTR MaLR 1 191 -376 24 0 0 0 chr4 16292781 16292805 -186035542 + AT_rich Low_complexity Low_complexity 1 24 0 1434 218 32 47 chr4 16292815 16293195 -186035152 + MLT1B LTR MaLR 1 374 -16 2495 152 38 31 chr4 16293771 16294001 -186034346 - MSTB LTR MaLR -2 424 188 2265 108 0 7 chr4 16294001 16294306 -186034041 - AluSx SINE Alu -9 303 1 2495 152 38 31 chr4 16294306 16294496 -186033851 - MSTB LTR MaLR -238 188 1 367 293 69 17 chr4 16295301 16295417 -186032930 + MIR SINE MIR 31 152 -110 193 230 92 115 chr4 16295468 16295555 -186032792 - MER5B DNA MER1_type -77 101 17 244 291 162 8 chr4 16297062 16297179 -186031168 - L2 LINE L2 -2 3270 3136 291 120 359 33 chr4 16298072 16298164 -186030183 + L2 LINE L2 3192 3313 0 2341 94 3 0 chr4 16298214 16298512 -186029835 - AluSx SINE Alu -13 299 1 1415 246 109 8 chr4 16299062 16299456 -186028891 + MER57B LTR ERV1 1 434 0 2784 260 101 69 chr4 16299902 16300249 -186028098 + L2 LINE L2 1351 1685 -1628 2302 97 0 0 chr4 16300249 16300539 -186027808 - AluSg SINE Alu -20 290 1 2784 260 101 69 chr4 16300539 16300789 -186027558 + L2 LINE L2 1685 1926 -1387 2878 98 36 0 chr4 16300789 16301206 -186027141 - L1MA2 LINE L1 0 6304 5873 2784 260 101 69 chr4 16301206 16302411 -186025936 + L2 LINE L2 1926 3311 -2 195 208 69 69 chr4 16302485 16302557 -186025790 + MIR SINE MIR 170 241 -21 393 296 109 14 chr4 16303182 16303415 -186024932 - MIR SINE MIR -3 259 7 361 304 94 55 chr4 16303817 16304018 -186024329 + MIR SINE MIR 47 255 -7 216 191 64 0 chr4 16304731 16304778 -186023569 + L2 LINE L2 3262 3311 -2 405 0 0 0 chr4 16304798 16304843 -186023504 + (TA)n Simple_repeat Simple_repeat 2 46 0 369 0 0 0 chr4 16304842 16304883 -186023464 + (GA)n Simple_repeat Simple_repeat 2 42 0 * 236 337 0 12 chr4 16306006 16306089 -186022258 + HAL1 LINE L1 4 85 -2422 269 186 14 0 chr4 16306204 16306274 -186022073 + (TG)n Simple_repeat Simple_repeat 1 71 0 2003 221 50 48 chr4 16306274 16306719 -186021628 + MER74B LTR ERVL 56 504 -118 2082 176 69 19 chr4 16306719 16307094 -186021253 + MSTD LTR MaLR 3 396 0 2003 221 50 48 chr4 16307094 16307208 -186021139 + MER74B LTR ERVL 504 616 -6 231 214 0 0 chr4 16307227 16307297 -186021050 + (TG)n Simple_repeat Simple_repeat 1 70 0 1898 181 103 32 chr4 16307367 16307803 -186020544 + MLT1C LTR MaLR 1 467 0 254 224 104 0 chr4 16307962 16308029 -186020318 + HAL1 LINE L1 415 488 -2019 352 223 127 83 chr4 16308297 16308454 -186019893 + HAL1 LINE L1 1180 1343 -1164 1013 278 99 55 chr4 16308472 16309206 -186019141 + L1MEd LINE L1 396 1162 -4957 652 218 28 34 chr4 16309215 16309394 -186018953 + MIR SINE MIR 64 241 -21 264 146 0 42 chr4 16309524 16309572 -186018775 - tRNA-Lys-AAG tRNA tRNA -30 46 1 504 260 59 52 chr4 16309758 16310051 -186018296 - L1M4 LINE L1 -2171 3975 3681 4703 159 9 22 chr4 16310191 16310888 -186017459 - L1MB4 LINE L1 0 6180 5494 1945 147 0 13 chr4 16310888 16311200 -186017147 - AluSx SINE Alu -4 308 1 4703 159 9 22 chr4 16311200 16311350 -186016997 - L1MB4 LINE L1 -686 5494 5344 312 308 44 0 chr4 16311380 16311539 -186016808 - L1M4 LINE L1 -2647 3499 3334 2196 261 38 21 chr4 16311619 16312193 -186016154 + MLT1G LTR MaLR 1 584 -6 225 0 0 0 chr4 16312226 16312251 -186016096 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 1917 211 12 20 chr4 16312304 16312703 -186015644 + MSTD LTR MaLR 1 396 0 1750 201 25 16 chr4 16312706 16313069 -186015278 - MLT1A2 LTR MaLR 0 374 9 1121 148 31 79 chr4 16314334 16314563 -186013784 + MER20 DNA MER1_type 2 219 0 225 0 0 0 chr4 16315451 16315476 -186012871 + (A)n Simple_repeat Simple_repeat 1 25 0 295 259 106 0 chr4 16316452 16316537 -186011810 + L2 LINE L2 3219 3312 -1 209 345 18 0 chr4 16316806 16316861 -186011486 + MIR SINE MIR 34 89 -173 384 344 30 15 chr4 16316924 16317055 -186011292 - L2 LINE L2 0 3272 3140 2292 120 34 34 chr4 16317059 16317416 -186010931 + THE1B LTR MaLR 1 357 -7 385 272 125 15 chr4 16317571 16317707 -186010640 + MIR3 SINE MIR 34 184 -24 237 146 0 0 chr4 16319148 16319196 -186009151 + (TTCA)n Simple_repeat Simple_repeat 2 49 0 350 261 130 9 chr4 16319196 16319311 -186009036 - L2 LINE L2 0 3313 3185 1126 277 81 18 chr4 16319389 16319772 -186008575 + LTR16C LTR ERVL 71 477 -14 445 259 65 0 chr4 16320592 16320731 -186007616 + MER117 DNA MER1_type 1 148 -49 283 294 29 29 chr4 16320768 16320870 -186007477 - MIR SINE MIR -72 136 35 316 143 71 0 chr4 16321062 16321118 -186007229 + MER53 DNA DNA 1 60 -129 605 174 128 0 chr4 16322355 16322464 -186005883 - FLAM_A SINE Alu -9 124 2 294 296 35 26 chr4 16322534 16322649 -186005698 - L1ME LINE L1 -376 5745 5630 865 147 71 38 chr4 16322923 16323107 -186005240 + MER20 DNA MER1_type 2 191 -28 312 285 102 29 chr4 16323787 16323924 -186004423 + MIR SINE MIR 21 167 -95 955 317 66 17 chr4 16324319 16324786 -186003561 + LTR33 LTR ERVL 32 521 0 599 0 14 0 chr4 16324916 16324987 -186003360 + (TTTTC)n Simple_repeat Simple_repeat 5 76 0 198 0 0 0 chr4 16324998 16325020 -186003327 + (T)n Simple_repeat Simple_repeat 1 22 0 4920 92 19 5 chr4 16325337 16325986 -186002361 - L1PA14 LINE L1 0 6161 5504 776 329 32 56 chr4 16326386 16326851 -186001496 + MLT1K LTR MaLR 12 465 -123 219 308 44 11 chr4 16327037 16327128 -186001219 - L2 LINE L2 -4 3309 3216 570 229 182 31 chr4 16327169 16327312 -186001035 + MIR SINE MIR 8 189 -73 1811 189 33 17 chr4 16327312 16327671 -186000676 - MLT1A1 LTR MaLR 0 365 1 570 229 182 31 chr4 16327671 16327719 -186000628 + MIR SINE MIR 189 228 -34 623 281 159 37 chr4 16328019 16328503 -185999844 - MLT1K LTR MaLR -1 587 45 350 360 48 31 chr4 16328570 16328923 -185999424 - L2 LINE L2 -557 2757 2399 2245 148 69 15 chr4 16328959 16329363 -185998984 + MSTB LTR MaLR 1 426 0 631 160 17 8 chr4 16330992 16331111 -185997236 + SVA Other Other 524 643 -743 26 30 0 0 chr4 16331186 16331219 -185997128 + AT_rich Low_complexity Low_complexity 1 33 0 263 231 110 33 chr4 16332130 16332221 -185996126 + L2 LINE L2 3171 3268 -4 2285 99 0 3 chr4 16333500 16333793 -185994554 - AluSg SINE Alu -18 292 1 654 320 26 39 chr4 16334123 16334354 -185993993 - MIR SINE MIR -11 251 24 2177 115 0 10 chr4 16334372 16334676 -185993671 - AluSx SINE Alu -11 301 1 280 291 78 19 chr4 16334772 16334827 -185993520 - MIR SINE MIR -63 145 95 2230 97 0 3 chr4 16334827 16335126 -185993221 + AluSc SINE Alu 1 298 -11 280 291 78 19 chr4 16335126 16335173 -185993174 - MIR SINE MIR -113 95 37 286 341 35 12 chr4 16335218 16335303 -185993044 + MIR SINE MIR 36 122 -86 27 100 0 0 chr4 16335466 16335556 -185992791 + AT_rich Low_complexity Low_complexity 1 90 0 21 36 0 0 chr4 16335584 16335612 -185992735 + AT_rich Low_complexity Low_complexity 1 28 0 226 313 31 0 chr4 16335913 16335977 -185992370 + MIR3 SINE MIR 89 154 -54 413 305 31 8 chr4 16336016 16336144 -185992203 + MIR3 SINE MIR 45 175 -33 209 205 0 13 chr4 16336556 16336634 -185991713 + (TCCA)n Simple_repeat Simple_repeat 4 80 0 198 286 20 0 chr4 16336645 16336694 -185991653 - L2 LINE L2 -16 3256 3207 666 208 80 71 chr4 16337593 16337805 -185990542 + MER20 DNA MER1_type 6 219 0 217 184 20 0 chr4 16337847 16337896 -185990451 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 503 322 101 13 chr4 16338100 16338327 -185990020 - MIR SINE MIR -10 252 6 433 290 74 78 chr4 16339195 16339426 -185988921 + MIR SINE MIR 20 249 -13 253 283 123 0 chr4 16340283 16340495 -185987852 - L1ME LINE L1 -236 5885 5648 860 168 0 0 chr4 16342215 16342346 -185986001 + FLAM_C SINE Alu 1 131 -12 2056 142 3 0 chr4 16342838 16343134 -185985213 + AluSx SINE Alu 1 297 -15 1043 305 38 40 chr4 16343324 16343793 -185984554 + L2 LINE L2 2808 3275 -38 33 0 0 0 chr4 16344010 16344043 -185984304 + AT_rich Low_complexity Low_complexity 1 33 0 375 220 52 91 chr4 16344200 16344425 -185983922 - L1MC4a LINE L1 -1896 5912 5695 563 0 15 0 chr4 16344425 16344492 -185983855 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 305 167 76 0 chr4 16344882 16344948 -185983399 - L1MB8 LINE L1 -1 6177 6107 240 194 28 0 chr4 16344950 16345022 -185983325 - L1MB7 LINE L1 -109 6075 6002 1121 183 0 0 chr4 16345055 16345230 -185983117 - AluJb SINE Alu -137 175 1 3304 147 9 63 chr4 16345639 16346324 -185982023 + L1MB3 LINE L1 5536 6183 0 327 328 170 6 chr4 16346373 16346544 -185981803 - MIR SINE MIR -32 230 32 205 254 104 30 chr4 16346956 16347023 -185981324 + L2 LINE L2 3150 3221 -92 265 296 57 0 chr4 16347219 16347307 -185981040 - MIR SINE MIR -73 135 43 234 305 24 12 chr4 16348586 16348668 -185979679 + MIR3 SINE MIR 111 193 -15 609 205 49 70 chr4 16349478 16349663 -185978684 + MER63A DNA MER1_type 29 209 -1 195 100 0 0 chr4 16349663 16349693 -185978654 + (CA)n Simple_repeat Simple_repeat 2 31 0 329 320 109 0 chr4 16349733 16349861 -185978486 - MIR SINE MIR -5 257 116 322 298 10 19 chr4 16350259 16350363 -185977984 + MER5B DNA MER1_type 76 178 0 332 344 66 27 chr4 16350468 16350651 -185977696 - L2 LINE L2 0 3272 3083 324 299 114 5 chr4 16351650 16351834 -185976513 - L2 LINE L2 -203 3069 2866 284 278 65 0 chr4 16352149 16352257 -185976090 - L2 LINE L2 -12 3260 3146 * 374 313 98 4 chr4 16352256 16352428 -185975919 - MIR3 SINE MIR -8 200 21 1356 179 54 67 chr4 16352624 16352921 -185975426 + AluJb SINE Alu 1 293 -19 23 0 0 0 chr4 16353308 16353331 -185975016 + AT_rich Low_complexity Low_complexity 1 23 0 1420 188 74 14 chr4 16353335 16353702 -185974645 - L1ME1 LINE L1 -5 6161 5773 524 250 61 28 chr4 16353737 16353917 -185974430 - MIR SINE MIR -56 206 21 295 322 26 17 chr4 16353922 16354037 -185974310 + MIR SINE MIR 136 251 -11 261 0 0 0 chr4 16354677 16354706 -185973641 + (A)n Simple_repeat Simple_repeat 1 29 0 282 280 16 127 chr4 16354787 16354976 -185973371 + MIR SINE MIR 34 201 -61 203 360 87 29 chr4 16355345 16355587 -185972760 - L2 LINE L2 -417 2897 2642 228 163 0 0 chr4 16355698 16355741 -185972606 + (TG)n Simple_repeat Simple_repeat 1 43 0 1036 257 66 28 chr4 16355927 16356398 -185971949 - L1ME4a LINE L1 -93 6028 5540 261 288 0 0 chr4 16356474 16356533 -185971814 - L3 LINE CR1 0 1577 1519 407 261 67 22 chr4 16356669 16356803 -185971544 - MIR SINE MIR -37 225 86 528 322 111 5 chr4 16356916 16357414 -185970933 - L2 LINE L2 -190 3082 2530 1327 143 179 4 chr4 16357511 16357784 -185970563 + MSTA LTR MaLR 44 364 -64 1161 201 193 4 chr4 16357784 16358038 -185970309 - AluJo SINE Alu -10 302 1 433 116 14 0 chr4 16358040 16358109 -185970238 + MSTA LTR MaLR 357 426 0 1268 216 11 0 chr4 16358109 16358382 -185969965 + L1MB5 LINE L1 5899 6174 0 24 32 0 0 chr4 16358476 16358507 -185969840 + AT_rich Low_complexity Low_complexity 1 31 0 230 372 64 11 chr4 16359011 16359199 -185969148 - MIR SINE MIR -43 219 22 * 307 296 12 0 chr4 16359194 16359275 -185969072 + L2 LINE L2 3232 3313 0 619 273 56 59 chr4 16359352 16359780 -185968567 + L1ME4a LINE L1 5516 5943 -178 755 139 9 0 chr4 16359780 16359895 -185968452 + FLAM_C SINE Alu 4 119 -14 619 273 56 59 chr4 16359895 16360042 -185968305 + L1ME4a LINE L1 5943 6089 -32 373 262 37 0 chr4 16362153 16362260 -185966087 - L2 LINE L2 0 3313 3203 200 314 146 22 chr4 16362454 16362639 -185965708 + MIR SINE MIR 43 250 -12 1635 215 77 51 chr4 16362809 16363134 -185965213 + MLT1D LTR MaLR 1 345 -160 3312 138 6 21 chr4 16363134 16363669 -185964678 - MER1A DNA MER1_type 0 527 1 1635 215 77 51 chr4 16363669 16363835 -185964512 + MLT1D LTR MaLR 345 505 0 281 305 0 12 chr4 16363898 16363980 -185964367 + MIR SINE MIR 15 95 -167 274 139 56 83 chr4 16364327 16364399 -185963948 + MIR SINE MIR 191 260 -2 503 266 91 37 chr4 16364855 16365264 -185963083 + L1ME4a LINE L1 5632 6062 -59 372 306 97 19 chr4 16365650 16365856 -185962491 - MIR SINE MIR -13 249 28 267 254 39 82 chr4 16366101 16366247 -185962100 - MER5A DNA MER1_type -37 141 4 597 171 13 26 chr4 16366529 16366659 -185961688 - MLT1A2 LTR MaLR -1 373 260 302 79 0 143 chr4 16366646 16366709 -185961638 - MLT1A2 LTR MaLR -317 57 4 * 199 307 27 13 chr4 16366711 16366786 -185961561 + MIR SINE MIR 32 107 -101 302 253 0 63 chr4 16366970 16367065 -185961282 - L1MC4 LINE L1 -1340 6702 6614 219 227 0 0 chr4 16367163 16367229 -185961118 + (TA)n Simple_repeat Simple_repeat 1 66 0 2319 80 3 32 chr4 16367234 16367546 -185960801 - AluSg SINE Alu -7 303 1 918 148 13 0 chr4 16367583 16367755 -185960592 - AluSq SINE Alu 0 307 134 304 191 0 0 chr4 16367864 16367927 -185960420 - L1MD3 LINE L1 -204 7791 7729 266 310 124 8 chr4 16368092 16368211 -185960136 + MIR SINE MIR 36 170 -58 377 212 42 8 chr4 16368546 16368664 -185959683 - L1ME4a LINE L1 -11 6110 5989 255 306 15 15 chr4 16368820 16368954 -185959393 - L1ME4a LINE L1 -321 5800 5667 569 296 119 37 chr4 16369250 16369841 -185958506 - L2 LINE L2 -2 3311 2687 462 280 66 14 chr4 16370295 16370506 -185957841 + MLT1L LTR MaLR 394 615 0 307 312 116 35 chr4 16371039 16371212 -185957135 - MIR SINE MIR -44 218 32 22 0 0 0 chr4 16371325 16371347 -185957000 + AT_rich Low_complexity Low_complexity 1 22 0 227 227 27 0 chr4 16371385 16371460 -185956887 + L1ME LINE L1 5714 5790 -331 1347 237 84 18 chr4 16371791 16372229 -185956118 + MLT1C LTR MaLR 1 467 0 2004 236 98 33 chr4 16372485 16373356 -185954991 - HAL1b LINE L1 0 1348 422 383 157 12 24 chr4 16374750 16374833 -185953514 + MLT1I LTR MaLR 328 409 0 483 359 13 35 chr4 16375479 16375710 -185952637 + MIR SINE MIR 31 256 -6 554 283 82 14 chr4 16375906 16376125 -185952222 - MIR SINE MIR -18 244 11 4422 155 8 17 chr4 16376162 16376879 -185951468 + MER50 LTR ERV1 1 711 -23 271 385 39 8 chr4 16377313 16377443 -185950904 + L2 LINE L2 3138 3271 -1 1944 125 65 40 chr4 16378289 16378642 -185949705 + THE1B LTR MaLR 1 362 -2 460 233 80 27 chr4 16378784 16378934 -185949413 + LTR16C LTR ERVL 240 397 -94 185 161 0 0 chr4 16379012 16379043 -185949304 + L2 LINE L2 3281 3311 -2 480 318 59 18 chr4 16379603 16379823 -185948524 + MIR SINE MIR 17 245 -17 2612 201 43 18 chr4 16379997 16380604 -185947743 + MER74B LTR ERVL 1 622 0 333 342 27 43 chr4 16380943 16381130 -185947217 - L1ME4a LINE L1 -94 6027 5844 972 341 59 18 chr4 16381256 16381746 -185946601 + L2 LINE L2 2804 3313 0 396 205 89 36 chr4 16381776 16381888 -185946459 - MIR SINE MIR -72 190 73 374 320 20 13 chr4 16381899 16382049 -185946298 - MER5A DNA MER1_type -1 188 38 * 420 338 13 7 chr4 16381923 16382074 -185946273 + MER5A DNA MER1_type 38 189 0 2218 125 36 31 chr4 16382218 16382577 -185945770 - THE1B LTR MaLR -3 361 1 323 183 17 0 chr4 16483966 16484026 -185844321 + MER112 DNA MER1_type 199 259 -1 1126 213 14 19 chr4 16484133 16484487 -185843860 - L1MA9 LINE L1 -11 6301 5854 21 71 0 0 chr4 16484883 16484925 -185843422 + AT_rich Low_complexity Low_complexity 1 42 0 2663 53 0 0 chr4 16485176 16485479 -185842868 - AluY SINE Alu -8 303 1 1539 212 48 8 chr4 16485577 16485931 -185842416 - L1MB8 LINE L1 0 6178 5811 445 284 31 0 chr4 16486338 16486465 -185841882 - MIR SINE MIR -13 249 119 1319 167 29 122 chr4 16486588 16486738 -185841609 + MLT1A1 LTR MaLR 1 163 -202 2273 94 0 28 chr4 16486738 16487058 -185841289 + AluSq SINE Alu 1 311 -2 1319 167 29 122 chr4 16487058 16487291 -185841056 + MLT1A1 LTR MaLR 163 348 -17 229 299 92 11 chr4 16487419 16487506 -185840841 + MLT1J LTR MaLR 105 198 -313 243 234 106 21 chr4 16487646 16487740 -185840607 + MLT1I LTR MaLR 306 407 -2 216 196 43 0 chr4 16488259 16488305 -185840042 + MIR SINE MIR 205 252 -10 234 240 108 62 chr4 16488336 16488465 -185839882 - L2 LINE L2 -40 3273 3139 1826 133 97 31 chr4 16488801 16489153 -185839194 - THE1C LTR MaLR 0 375 1 2213 84 22 16 chr4 16489162 16489482 -185838865 - THE1C-int LTR MaLR -8 1572 1251 2262 101 7 151 chr4 16489496 16489960 -185838387 - THE1C-int LTR MaLR -1183 397 1 2169 119 61 25 chr4 16489960 16490322 -185838025 - THE1C LTR MaLR 0 375 1 911 289 80 63 chr4 16490325 16490972 -185837375 - L2 LINE L2 -1008 2306 1649 1757 163 35 0 chr4 16491273 16491561 -185836786 + AluSx SINE Alu 1 298 -14 619 295 37 25 chr4 16491597 16491838 -185836509 - MIR SINE MIR 0 262 19 5130 7 20 0 chr4 16492140 16492691 -185835656 - L1PA2 LINE L1 -3 6152 5591 2937 124 7 0 chr4 16494737 16495157 -185833190 - MSTA LTR MaLR 0 428 6 722 161 97 19 chr4 16495179 16495334 -185833013 - MER58A DNA MER1_type 0 167 1 1217 93 12 0 chr4 16495448 16495609 -185832738 - AluSq SINE Alu -150 163 1 224 273 106 70 chr4 16495609 16495836 -185832511 + L2 LINE L2 2997 3231 -41 2698 257 96 12 chr4 16496354 16497271 -185831076 - L1ME3A LINE L1 -8 6162 5164 466 341 36 0 chr4 16497403 16497570 -185830777 - MIR3 SINE MIR -27 181 9 276 206 96 27 chr4 16498422 16498495 -185829852 - MER116 DNA Mariner 0 80 3 543 245 185 28 chr4 16498580 16498796 -185829551 - MIR SINE MIR -2 260 11 196 220 20 20 chr4 16499318 16499368 -185828979 - MIR SINE MIR -13 249 200 443 269 0 34 chr4 16500085 16500204 -185828143 - MIR SINE MIR -79 183 69 2462 62 3 0 chr4 16500267 16500558 -185827789 - AluSp SINE Alu -21 292 1 249 229 0 0 chr4 16500685 16500733 -185827614 + MIR SINE MIR 4 51 -211 628 289 55 12 chr4 16500768 16501024 -185827323 + LTR16C LTR ERVL 151 417 -74 1129 281 70 7 chr4 16501031 16501458 -185826889 - LTR16B LTR ERVL 0 464 11 242 213 0 0 chr4 16502471 16502518 -185825829 - MIR SINE MIR -119 143 97 281 197 30 0 chr4 16502525 16502591 -185825756 + MER53 DNA DNA 1 68 -121 244 220 64 99 chr4 16502620 16502761 -185825586 - MER53 DNA DNA -49 140 5 252 225 56 42 chr4 16502943 16503014 -185825333 + LTR16C LTR ERVL 420 491 0 * 327 307 163 48 chr4 16503014 16503381 -185824966 + LTR67 LTR ERVL 142 551 -6 308 245 93 29 chr4 16503839 16503978 -185824369 - ERVL LTR ERVL -4019 1745 1598 2224 112 0 3 chr4 16504220 16504515 -185823832 - AluSq SINE Alu -19 294 1 210 303 0 40 chr4 16504720 16504819 -185823528 + CT-rich Low_complexity Low_complexity 4 98 0 197 273 71 20 chr4 16505084 16505183 -185823164 + MIR SINE MIR 101 204 -58 297 280 43 71 chr4 16505337 16505548 -185822799 - L1MC4 LINE L1 -9 8033 7829 305 239 14 0 chr4 16505771 16505842 -185822505 + MER103 DNA DNA 31 102 -64 2436 120 53 6 chr4 16507305 16507663 -185820684 + THE1C LTR MaLR 1 375 0 3574 134 112 5 chr4 16507663 16508268 -185820079 + THE1C-int LTR MaLR 1 670 -910 249 341 81 23 chr4 16508939 16509112 -185819235 + MIR SINE MIR 23 205 -57 717 289 122 35 chr4 16510577 16510947 -185817400 - MLT1J2 LTR MaLR -16 434 33 258 279 16 0 chr4 16511102 16511163 -185817184 + MIR3 SINE MIR 127 188 -20 319 222 11 67 chr4 16511449 16511539 -185816808 + MIR3 SINE MIR 113 197 -11 1234 112 6 0 chr4 16512014 16512183 -185816164 - L1PA8 LINE L1 -14 6158 5989 376 278 108 57 chr4 16512183 16512350 -185815997 - MIR SINE MIR -72 190 12 644 288 98 74 chr4 16512567 16512987 -185815360 - MLT1J2 LTR MaLR 0 450 21 208 200 20 20 chr4 16512991 16513041 -185815306 + MIR SINE MIR 102 151 -111 184 320 52 10 chr4 16513682 16513779 -185814568 + L2 LINE L2 2873 2973 -341 39 68 0 0 chr4 16514137 16514211 -185814136 + AT_rich Low_complexity Low_complexity 1 74 0 702 324 44 3 chr4 16514717 16515010 -185813337 + LTR16A LTR ERVL 96 400 -50 651 273 89 35 chr4 16515073 16515355 -185812992 + MLT1L LTR MaLR 301 597 -18 412 274 21 0 chr4 16515652 16515747 -185812600 + LTR33 LTR ERVL 6 102 -419 1458 242 63 13 chr4 16515887 16516284 -185812063 + Charlie4a DNA MER1_type 2 418 -90 25 31 0 0 chr4 16516284 16516316 -185812031 + AT_rich Low_complexity Low_complexity 1 32 0 4482 25 0 0 chr4 16516316 16516805 -185811542 - L1PA3 LINE L1 0 6155 5667 41161 37 28 2 chr4 16516905 16521907 -185806440 - L1PA3 LINE L1 -1011 5135 1 278 274 117 45 chr4 16522009 16522188 -185806159 + LTR33 LTR ERVL 328 519 -2 242 271 0 14 chr4 16522228 16522298 -185806049 + MIR SINE MIR 83 151 -111 22 0 0 0 chr4 16522722 16522744 -185805603 + AT_rich Low_complexity Low_complexity 1 22 0 315 301 154 27 chr4 16523693 16524025 -185804322 + HAL1 LINE L1 1234 1607 -900 1905 124 19 62 chr4 16524604 16524926 -185803421 + AluSx SINE Alu 5 312 0 564 353 11 22 chr4 16525241 16525510 -185802837 - L2 LINE L2 -232 3081 2816 314 326 65 29 chr4 16525583 16525721 -185802626 + L2 LINE L2 3112 3254 -18 28 0 0 0 chr4 16526773 16526801 -185801546 + AT_rich Low_complexity Low_complexity 1 28 0 237 33 0 0 chr4 16526830 16526860 -185801487 + (TG)n Simple_repeat Simple_repeat 2 31 0 191 345 84 34 chr4 16526955 16527074 -185801273 + L2 LINE L2 2986 3110 -162 480 51 51 10 chr4 16528283 16528381 -185799966 + (TA)n Simple_repeat Simple_repeat 2 103 0 642 193 9 18 chr4 16528636 16528750 -185799597 - FLAM_A SINE Alu -20 122 10 487 146 22 34 chr4 16528756 16528845 -185799502 + L1MA5A LINE L1 6206 6293 -4 321 325 49 38 chr4 16529021 16529412 -185798935 + HAL1b LINE L1 62 456 -892 565 287 25 0 chr4 16529543 16529700 -185798647 + L1MDa LINE L1 1 161 -6379 676 138 62 28 chr4 16529742 16529887 -185798460 + L1MDa LINE L1 2387 2536 -4004 642 249 63 15 chr4 16529893 16530098 -185798249 + L1MD2 LINE L1 5927 6141 -218 564 199 55 14 chr4 16530100 16530246 -185798101 + L1MD2 LINE L1 6195 6346 -13 223 210 32 32 chr4 16530776 16530838 -185797509 + MIR SINE MIR 18 79 -183 * 657 316 146 21 chr4 16530827 16531107 -185797240 + L2 LINE L2 2837 3189 -124 1596 226 59 8 chr4 16531107 16531478 -185796869 - MLT1B LTR MaLR 0 390 1 657 316 146 21 chr4 16531478 16531621 -185796726 + L2 LINE L2 3189 3313 0 360 328 15 0 chr4 16531680 16531814 -185796533 + MIR SINE MIR 124 259 -3 678 111 37 32 chr4 16533140 16533363 -185794984 + CT-rich Low_complexity Low_complexity 1 224 0 221 283 0 0 chr4 16535042 16535088 -185793259 + L2 LINE L2 3211 3256 -16 2432 87 0 3 chr4 16535513 16535823 -185792524 - AluSc SINE Alu 0 309 1 1596 254 55 16 chr4 16536296 16536843 -185791504 + L1PB1 LINE L1 4 571 -6292 2119 198 118 4 chr4 16536848 16537358 -185790989 + L1PB1 LINE L1 609 1176 -5687 * 14529 184 19 6 chr4 16537355 16541219 -185787128 + L1PB1 LINE L1 2949 6866 -1 198 0 0 0 chr4 16541340 16541362 -185786985 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 259 355 58 24 chr4 16541465 16541565 -185786782 - L2 LINE L2 -554 2760 2665 2479 104 58 67 chr4 16541565 16541997 -185786350 - MSTA LTR MaLR 0 428 1 259 355 58 24 chr4 16541997 16542189 -185786158 - L2 LINE L2 -649 2665 2458 370 264 62 3 chr4 16542330 16542443 -185785904 + MIR SINE MIR 5 123 -85 295 240 27 0 chr4 16543045 16543120 -185785227 + GA-rich Low_complexity Low_complexity 2 78 0 332 219 144 65 chr4 16544025 16544226 -185784121 + MIR SINE MIR 15 231 -31 955 273 97 24 chr4 16544428 16544798 -185783549 - MLT1I LTR MaLR -8 401 5 181 355 86 0 chr4 16544869 16544962 -185783385 - L2 LINE L2 -3 3310 3210 530 274 91 18 chr4 16545444 16545663 -185782684 + MIR SINE MIR 24 258 -4 513 303 36 0 chr4 16546275 16546470 -185781877 - MIR SINE MIR 0 262 61 234 264 198 41 chr4 16549022 16549143 -185779204 + MIR SINE MIR 53 192 -70 213 196 0 0 chr4 16550319 16550370 -185777977 + (CAT)n Simple_repeat Simple_repeat 3 53 0 227 308 34 82 chr4 16550918 16551064 -185777283 - MIR SINE MIR -61 201 63 553 294 35 10 chr4 16551975 16552172 -185776175 - MIR3 SINE MIR -6 202 1 392 278 0 9 chr4 16552567 16552682 -185775665 + L2 LINE L2 1850 1963 -1351 577 320 150 30 chr4 16553101 16553567 -185774780 + L3 LINE CR1 967 1488 -89 2322 82 7 0 chr4 16553653 16553956 -185774391 - AluY SINE Alu -2 309 5 2305 166 78 5 chr4 16554437 16554834 -185773513 + MSTB LTR MaLR 1 426 0 319 245 31 109 chr4 16555759 16555951 -185772396 - MER69A DNA AcHobo 0 177 1 617 215 146 19 chr4 16556085 16556243 -185772104 - MLT1D LTR MaLR 0 505 328 195 349 78 36 chr4 16556602 16556768 -185771579 + L2 LINE L2 2866 3038 -275 424 315 91 0 chr4 16556898 16557063 -185771284 + MIR SINE MIR 64 243 -19 2282 121 159 5 chr4 16557654 16558025 -185770322 - MSTA LTR MaLR 0 428 1 297 0 0 0 chr4 16558282 16558315 -185770032 + (TC)n Simple_repeat Simple_repeat 1 33 0 * 342 0 0 0 chr4 16558314 16558352 -185769995 + (CA)n Simple_repeat Simple_repeat 1 38 0 447 289 40 55 chr4 16558639 16558725 -185769622 - MIR SINE MIR -17 245 159 2445 119 30 22 chr4 16558725 16559086 -185769261 + THE1B LTR MaLR 1 364 0 12367 90 8 16 chr4 16559086 16560679 -185767668 + THE1B-int LTR MaLR 1 1580 0 2390 125 30 28 chr4 16560679 16561040 -185767307 + THE1B LTR MaLR 1 362 -2 447 289 40 55 chr4 16561040 16561152 -185767195 - MIR SINE MIR -100 162 48 479 264 25 8 chr4 16561785 16561906 -185766441 - MLT1K LTR MaLR -300 288 166 1084 137 0 0 chr4 16562606 16562767 -185765580 + FRAM SINE Alu 1 40 0 511 325 67 57 chr4 16563198 16563949 -185764398 + L1ME4a LINE L1 5267 6036 -85 958 217 51 118 chr4 16563949 16564340 -185764007 - MLT1A1 LTR MaLR 0 365 1 511 325 67 57 chr4 16564340 16564369 -185763978 + L1ME4a LINE L1 6036 6063 -58 625 275 69 103 chr4 16565618 16566046 -185762301 - L2 LINE L2 -662 2652 2242 2368 79 3 10 chr4 16566046 16566350 -185761997 + AluY SINE Alu 1 302 -9 625 275 69 103 chr4 16566350 16566427 -185761920 - L2 LINE L2 -1072 2242 2164 199 241 155 0 chr4 16566452 16566510 -185761837 + MIR SINE MIR 79 145 -117 321 348 0 28 chr4 16566674 16566881 -185761466 + (TATATG)n Simple_repeat Simple_repeat 1 201 0 1993 166 61 9 chr4 16567049 16567393 -185760954 - MLT1A1 LTR MaLR -1 364 3 2064 148 35 27 chr4 16567393 16567765 -185760582 + THE1C LTR MaLR 1 375 0 2083 130 17 0 chr4 16568283 16568583 -185759764 + AluSx SINE Alu 1 305 -7 822 215 56 26 chr4 16568583 16568731 -185759616 - MLT1C LTR MaLR -7 460 303 1563 166 56 125 chr4 16568731 16569123 -185759224 - MLT1A1 LTR MaLR 0 365 1 822 215 56 26 chr4 16569123 16569169 -185759178 - MLT1C LTR MaLR -164 303 260 2082 136 0 3 chr4 16569169 16569524 -185758823 - AluSx SINE Alu 0 354 1 832 239 92 16 chr4 16569525 16569776 -185758571 - MLT1C LTR MaLR -192 275 6 186 336 29 29 chr4 16570032 16570136 -185758211 + L2 LINE L2 3210 3313 0 211 238 62 62 chr4 16570417 16570497 -185757850 - L2 LINE L2 -1 3271 3192 486 290 73 33 chr4 16570868 16571171 -185757176 - HAL1 LINE L1 0 2507 2193 498 273 19 20 chr4 16571191 16571434 -185756913 + L1 LINE L1 4811 5055 -1091 742 304 63 18 chr4 16571991 16572482 -185755865 - L1MEc LINE L1 -3323 2892 2380 251 322 73 10 chr4 16572604 16572809 -185755538 - L1MEc LINE L1 -3888 2508 2291 2928 81 44 20 chr4 16572882 16573291 -185755056 + L1MA1 LINE L1 5884 6302 0 1217 229 39 22 chr4 16574100 16574619 -185753728 + MLT1E2 LTR MaLR 1 586 -40 2650 86 11 3 chr4 16574619 16574993 -185753354 - L1PA13 LINE L1 -5 6158 5782 1217 229 39 22 chr4 16574993 16575033 -185753314 + MLT1E2 LTR MaLR 586 624 -2 8260 66 11 8 chr4 16575045 16576112 -185752235 - MER11C LTR ERVK 0 1071 1 1255 246 107 42 chr4 16576621 16577171 -185751176 + MLT1G1 LTR MaLR 1 586 -9 344 213 80 0 chr4 16577215 16577290 -185751057 - MIR SINE MIR -78 130 50 206 231 15 0 chr4 16577853 16577918 -185750429 + CT-rich Low_complexity Low_complexity 2 67 0 299 342 25 17 chr4 16578065 16578185 -185750162 - MIR3 SINE MIR -87 121 1 247 266 38 25 chr4 16578583 16578662 -185749685 - MIR SINE MIR -70 192 113 1501 257 53 7 chr4 16578731 16579163 -185749184 + MER97c DNA MER1_type? 1 452 -638 216 185 37 37 chr4 16579182 16579236 -185749111 - L2 LINE L2 -16 3297 3244 2187 152 102 78 chr4 16579283 16579696 -185748651 + MLT2B2 LTR ERVL 1 430 -85 459 0 0 0 chr4 16579696 16579747 -185748600 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 2187 152 102 78 chr4 16579747 16579833 -185748514 + MLT2B2 LTR ERVL 430 512 -3 302 140 0 18 chr4 16579976 16580033 -185748314 - MLT2B1 LTR ERVL -464 56 1 192 284 45 30 chr4 16580087 16580154 -185748193 - L2 LINE L2 -241 3072 3005 929 173 0 65 chr4 16580161 16580346 -185748001 + FRAM SINE Alu 1 172 -4 525 191 0 0 chr4 16580348 16580453 -185747894 + GA-rich Low_complexity Low_complexity 4 108 0 233 303 284 37 chr4 16580486 16580975 -185747372 - L2 LINE L2 -337 2977 2368 240 35 0 0 chr4 16580980 16581009 -185747338 + (TG)n Simple_repeat Simple_repeat 1 29 0 7157 26 1 0 chr4 16581058 16581947 -185746400 - L1PA3 LINE L1 -1636 4510 3621 7468 27 16 0 chr4 16581947 16583589 -185744758 + L1PA3 LINE L1 4499 6154 -1 229 241 114 0 chr4 16583598 16583677 -185744670 - L1ME4a LINE L1 -70 6051 5964 22 0 0 0 chr4 16583681 16583703 -185744644 + AT_rich Low_complexity Low_complexity 1 22 0 468 310 99 25 chr4 16583731 16583973 -185744374 + MIR SINE MIR 3 262 0 211 333 131 0 chr4 16585552 16585651 -185742696 - MIR SINE MIR -149 113 2 217 284 171 11 chr4 16586310 16586398 -185741949 - MIR SINE MIR -149 113 12 1466 145 79 41 chr4 16586545 16586862 -185741485 + Tigger2a DNA MER2_type 1 329 -105 897 184 34 0 chr4 16587001 16587180 -185741167 - MER58A DNA MER1_type 0 224 40 22 35 0 0 chr4 16587552 16587581 -185740766 + AT_rich Low_complexity Low_complexity 1 29 0 338 380 62 4 chr4 16587600 16587826 -185740521 + L1ME4a LINE L1 3926 4164 -1982 903 149 98 102 chr4 16587837 16587927 -185740420 + MER4A LTR ERV1 1 90 -375 2388 88 3 0 chr4 16587927 16588221 -185740126 - AluSp SINE Alu -18 295 1 903 149 98 102 chr4 16588221 16588587 -185739760 + MER4A LTR ERV1 90 465 0 399 281 68 43 chr4 16588603 16588838 -185739509 + L1ME4a LINE L1 4199 4439 -1707 1457 261 53 77 chr4 16589119 16589851 -185738496 + MER21B LTR ERV1 24 738 -125 207 0 0 0 chr4 16589984 16590007 -185738340 + (T)n Simple_repeat Simple_repeat 1 23 0 380 254 186 6 chr4 16590056 16590233 -185738114 - MER46C DNA MER2_type -128 210 2 645 223 202 4 chr4 16590337 16590570 -185737777 + MER69 DNA AcHobo 501 779 -1747 1917 250 22 44 chr4 16590573 16591204 -185737143 + MLT1E3 LTR MaLR 3 619 -5 913 239 126 25 chr4 16591197 16591523 -185736824 + MER69 DNA AcHobo 764 1122 -1404 * 482 251 48 16 chr4 16591542 16591729 -185736618 + MER69 DNA AcHobo 2317 2509 -17 325 300 67 11 chr4 16591890 16592070 -185736277 + MLT1L LTR MaLR 100 289 -326 2856 71 6 11 chr4 16592313 16592679 -185735668 - THE1B LTR MaLR 0 364 1 416 283 143 30 chr4 16593087 16593557 -185734790 + L1ME4a LINE L1 5395 5917 -204 233 122 24 0 chr4 16593751 16593792 -185734555 - MLT2B2 LTR ERVL 0 515 474 418 312 7 22 chr4 16593944 16594082 -185734265 + MIR SINE MIR 44 179 -83 200 276 17 35 chr4 16594108 16594166 -185734181 - MIR SINE MIR -131 77 29 301 332 51 43 chr4 16595375 16595610 -185732737 - LTR16C LTR ERVL -10 481 245 288 253 55 44 chr4 16595880 16595971 -185732376 + LTR33 LTR ERVL 189 280 -241 1786 193 72 25 chr4 16596446 16596575 -185731772 - L1MC3 LINE L1 -1 7784 7663 2391 116 31 6 chr4 16596575 16596928 -185731419 - THE1B LTR MaLR 0 364 3 1786 193 72 25 chr4 16596928 16597284 -185731063 - L1MC3 LINE L1 -122 7663 7276 333 83 134 0 chr4 16597408 16597475 -185730872 + MLT1E1 LTR MaLR 480 654 0 972 187 15 20 chr4 16597603 16597801 -185730546 - L1MB1 LINE L1 -5 6163 5967 293 267 109 36 chr4 16597812 16598059 -185730288 + L1ME3A LINE L1 975 1239 -4880 23 0 0 0 chr4 16598125 16598148 -185730199 + AT_rich Low_complexity Low_complexity 1 23 0 2077 127 10 0 chr4 16598200 16598499 -185729848 + AluSx SINE Alu 1 302 -10 442 351 33 47 chr4 16598734 16598858 -185729489 + L1MEd LINE L1 561 685 -5434 1569 175 114 3 chr4 16598858 16599183 -185729164 - MLT1A1 LTR MaLR -4 361 1 442 351 33 47 chr4 16599183 16599417 -185728930 + L1MEd LINE L1 685 914 -5205 819 323 32 16 chr4 16599418 16600097 -185728250 + L1MEd LINE L1 2554 3243 -2886 809 202 28 0 chr4 16600103 16600281 -185728066 - MLT1B LTR MaLR 0 390 208 258 287 48 0 chr4 16600281 16600448 -185727899 + L1MEd LINE L1 4251 4425 -1704 672 144 55 106 chr4 16600448 16600533 -185727814 - MLT1B LTR MaLR -160 214 126 2339 102 7 0 chr4 16600533 16600838 -185727509 + AluSp SINE Alu 1 307 -6 672 144 55 106 chr4 16600838 16600988 -185727359 - MLT1B LTR MaLR -248 126 1 292 311 60 27 chr4 16600991 16601201 -185727146 + L1ME3A LINE L1 3240 3464 -2665 1846 159 3 29 chr4 16601201 16601510 -185726837 + AluSx SINE Alu 1 301 -11 292 311 60 27 chr4 16601510 16601598 -185726749 + L1ME3A LINE L1 3464 3548 -2581 1649 301 133 30 chr4 16601662 16601890 -185726457 + L1ME3A LINE L1 3710 3913 -2240 884 106 4 186 chr4 16601890 16602126 -185726221 + 7SK RNA RNA 1 193 0 1649 301 133 30 chr4 16602126 16602249 -185726098 + L1ME3A LINE L1 3913 4022 -2131 1988 114 53 4 chr4 16602249 16602530 -185725817 + AluSg SINE Alu 1 295 -15 1649 301 133 30 chr4 16602530 16602550 -185725797 + L1ME3A LINE L1 4022 4039 -2114 1621 172 19 113 chr4 16602550 16603027 -185725320 + MSTB1 LTR MaLR 1 432 0 1649 301 133 30 chr4 16603027 16604662 -185723685 + L1ME3A LINE L1 4039 5919 -234 6128 219 29 83 chr4 16605179 16606276 -185722071 + L1MD1 LINE L1 2693 3848 -2378 2290 86 3 3 chr4 16606276 16606577 -185721770 + AluSc SINE Alu 1 301 -8 6128 219 29 83 chr4 16606577 16607272 -185721075 + L1MD1 LINE L1 3848 4579 -1647 345 35 0 70 chr4 16607272 16607329 -185721018 + MADE1 DNA Mariner 1 53 -27 6128 219 29 83 chr4 16607329 16608435 -185719912 + L1MD1 LINE L1 4579 5483 -743 2557 102 6 0 chr4 16608435 16608788 -185719559 + THE1A LTR MaLR 1 355 0 11074 101 25 7 chr4 16608789 16610341 -185718006 + THE1A-int LTR MaLR 2 1580 0 1878 97 10 1 chr4 16610341 16610650 -185717697 + THE1A LTR MaLR 1 355 0 3719 181 9 12 chr4 16610655 16611400 -185716947 + L1MD1 LINE L1 5500 6242 0 186 279 33 0 chr4 16611633 16611694 -185716653 + L2 LINE L2 3210 3272 0 263 274 140 45 chr4 16611777 16611831 -185716516 + MIR SINE MIR 64 111 -151 2251 130 0 6 chr4 16611831 16612146 -185716201 - AluSq SINE Alu 0 313 1 263 274 140 45 chr4 16612146 16612270 -185716077 + MIR SINE MIR 111 259 -3 499 288 62 0 chr4 16612786 16612946 -185715401 + MIR SINE MIR 84 253 -9 266 293 52 20 chr4 16613032 16613147 -185715200 + MIR SINE MIR 20 123 -85 497 281 69 64 chr4 16613147 16613350 -185714997 + MIR SINE MIR 3 206 -56 190 214 0 24 chr4 16613410 16613452 -185714895 + MIR SINE MIR 197 237 -25 2572 51 3 6 chr4 16613827 16614139 -185714208 + AluY SINE Alu 1 311 0 1349 115 32 46 chr4 16614509 16614726 -185713621 + AluSg/x SINE Alu 93 306 -6 637 308 114 52 chr4 16614982 16615385 -185712962 - L2 LINE L2 -1 3312 2885 247 316 60 45 chr4 16615655 16615788 -185712559 + MIR3 SINE MIR 10 144 -64 206 215 0 15 chr4 16615887 16615952 -185712395 + A-rich Low_complexity Low_complexity 2 65 0 1772 239 76 39 chr4 16616185 16616776 -185711571 + MLT1E3 LTR MaLR 12 624 0 1965 154 61 11 chr4 16616905 16617281 -185711066 - L1MB1 LINE L1 -5 6163 5769 562 198 0 0 chr4 16617289 16617395 -185710952 - L1 LINE L1 -2475 3495 3390 1369 101 43 47 chr4 16617518 16617775 -185710572 + L1PA13 LINE L1 5906 6161 -2 3516 247 123 31 chr4 16617860 16621077 -185707270 - L1 LINE L1 -2656 3314 249 276 354 53 0 chr4 16621181 16621294 -185707053 - MIR SINE MIR -3 259 141 397 265 45 45 chr4 16621576 16621708 -185706639 + MER5B DNA MER1_type 1 132 -46 371 206 0 34 chr4 16621820 16621917 -185706430 - MLT1I LTR MaLR -4 428 319 199 348 186 19 chr4 16622603 16622813 -185705534 + L2 LINE L2 2807 3051 -221 2418 142 49 12 chr4 16622981 16623412 -185704935 - L1MB3 LINE L1 -74 6109 5663 271 191 36 24 chr4 16623656 16623740 -185704607 - L1ME3A LINE L1 -5 6165 6081 266 229 121 84 chr4 16623744 16623993 -185704354 + HAL1 LINE L1 2211 2468 -39 25 83 0 0 chr4 16623993 16624053 -185704294 + AT_rich Low_complexity Low_complexity 1 60 0 260 243 19 93 chr4 16624316 16624423 -185703924 - HAL1 LINE L1 -752 1755 1657 23 54 0 0 chr4 16625770 16625807 -185702540 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 16627170 16627192 -185701155 + AT_rich Low_complexity Low_complexity 1 22 0 421 215 125 35 chr4 16630311 16630455 -185697892 + MIR SINE MIR 106 262 0 349 254 52 30 chr4 16630637 16630771 -185697576 + L1MC/D LINE L1 5616 5752 -2056 377 308 104 22 chr4 16630785 16630967 -185697380 - L1MB3 LINE L1 -2342 5466 5270 316 383 8 8 chr4 16631132 16631252 -185697095 + L2 LINE L2 3146 3265 -7 200 253 12 108 chr4 16632311 16632394 -185695953 - MER5A DNA MER1_type -71 118 44 * 409 204 43 0 chr4 16632329 16632422 -185695925 + MER5B DNA MER1_type 80 176 -2 22 56 0 0 chr4 16632851 16632887 -185695460 + AT_rich Low_complexity Low_complexity 1 36 0 577 259 174 19 chr4 16633136 16633348 -185694999 - MIR SINE MIR 0 262 18 2837 265 138 25 chr4 16633995 16635144 -185693203 + L2 LINE L2 1440 2717 -597 817 289 172 32 chr4 16635175 16635850 -185692497 + L2 LINE L2 2283 3041 -231 2198 150 3 12 chr4 16636871 16637211 -185691136 - MER1B DNA MER1_type -2 337 1 304 255 261 27 chr4 16637673 16637857 -185690490 - MIR SINE MIR -16 246 20 22 35 0 0 chr4 16638869 16638898 -185689449 + AT_rich Low_complexity Low_complexity 1 29 0 279 319 202 42 chr4 16640030 16640366 -185687981 - L2 LINE L2 -340 2974 2585 2251 110 0 0 chr4 16642573 16642883 -185685464 + AluY SINE Alu 1 310 -1 2125 121 29 13 chr4 16645485 16645792 -185682555 - MER1B DNA MER1_type 0 339 28 528 258 26 5 chr4 16647117 16647311 -185681036 + L1ME3 LINE L1 2933 3130 -3016 1563 246 105 37 chr4 16647317 16649364 -185678983 + L1ME3 LINE L1 3296 5556 -606 2200 98 0 14 chr4 16649364 16649661 -185678686 + AluSq SINE Alu 1 293 -20 1563 246 105 37 chr4 16649661 16649961 -185678386 + L1ME3 LINE L1 5556 5834 -328 23 78 0 0 chr4 16650029 16650080 -185678267 + AT_rich Low_complexity Low_complexity 1 51 0 191 188 21 0 chr4 16650470 16650518 -185677829 + (TA)n Simple_repeat Simple_repeat 1 49 0 810 206 55 41 chr4 16651515 16651734 -185676613 - MER58A DNA MER1_type -2 222 1 27 49 0 0 chr4 16652159 16652200 -185676147 + AT_rich Low_complexity Low_complexity 1 41 0 2246 94 0 0 chr4 16654197 16654484 -185673863 + AluSp SINE Alu 11 297 -16 2132 105 3 0 chr4 16657012 16657307 -185671040 + AluSx SINE Alu 11 306 -6 2260 57 3 33 chr4 16658567 16658867 -185669480 - AluY SINE Alu -18 293 3 280 270 27 36 chr4 16709689 16709800 -185618547 - MIR SINE MIR -141 121 12 1062 152 31 42 chr4 16710723 16710914 -185617433 + AluJb SINE Alu 124 312 0 237 256 78 78 chr4 16711200 16711329 -185617018 + MIR3 SINE MIR 11 139 -69 578 82 15 87 chr4 16711685 16712009 -185616338 + (TA)n Simple_repeat Simple_repeat 1 300 0 2142 123 3 16 chr4 16712119 16712429 -185615918 + AluSx SINE Alu 1 306 -6 26 0 0 0 chr4 16712716 16712742 -185615605 + AT_rich Low_complexity Low_complexity 1 26 0 294 129 0 32 chr4 16712772 16712865 -185615482 + (TA)n Simple_repeat Simple_repeat 2 91 0 236 197 136 0 chr4 16712875 16712941 -185615406 - L1ME4a LINE L1 -68 6053 5979 646 155 52 9 chr4 16713148 16713264 -185615083 - L1MB7 LINE L1 -19 6165 6045 241 287 35 11 chr4 16713332 16713419 -185614928 - L1ME4a LINE L1 -2023 5785 5697 526 221 15 23 chr4 16713667 16713798 -185614549 + MIR SINE MIR 108 237 -25 208 309 25 12 chr4 16713945 16714026 -185614321 - MIR SINE MIR -113 149 68 185 321 247 0 chr4 16714236 16714317 -185614030 + L2 LINE L2 3141 3241 -31 195 231 0 0 chr4 16714659 16714698 -185613649 + L2 LINE L2 3148 3186 -86 522 343 56 16 chr4 16714754 16715060 -185613287 + L2 LINE L2 2565 2882 -432 476 266 78 53 chr4 16715108 16715352 -185612995 - MIR SINE MIR 0 262 13 196 337 130 11 chr4 16716529 16716621 -185611726 + L2 LINE L2 3153 3255 -17 210 167 0 48 chr4 16716904 16716946 -185611401 - MIR SINE MIR -9 253 214 291 154 19 0 chr4 16717206 16717258 -185611089 - MSTD LTR MaLR -49 347 295 537 200 10 0 chr4 16717336 16717436 -185610911 - MSTD LTR MaLR -293 103 3 2048 155 44 8 chr4 16717436 16717798 -185610549 + MER34C LTR ERV1 203 577 -8 910 297 81 26 chr4 16717789 16718173 -185610174 + MLT1J1 LTR MaLR 42 446 0 * 286 360 34 27 chr4 16718402 16718549 -185609798 + L2 LINE L2 2955 3102 -170 2034 168 40 0 chr4 16718695 16719022 -185609325 + MER2 DNA MER2_type 2 341 -3 277 314 12 12 chr4 16720232 16720318 -185608029 - MER5A DNA MER1_type -100 89 4 369 223 58 29 chr4 16720449 16720552 -185607795 - MER103 DNA DNA -1 165 60 389 299 186 9 chr4 16721205 16721426 -185606921 + MIR SINE MIR 3 262 0 343 189 174 15 chr4 16721437 16721569 -185606778 + L1ME4a LINE L1 5965 6117 -4 227 237 75 21 chr4 16721589 16721682 -185606665 + L1ME4a LINE L1 5991 6088 -33 305 325 46 100 chr4 16722175 16722455 -185605892 - L2 LINE L2 -4 3268 3004 1304 140 49 101 chr4 16722659 16722966 -185605381 - MER7A DNA MER2_type -57 289 1 2192 155 69 5 chr4 16722986 16723373 -185604974 - MLT2C2 LTR ERVL -49 404 11 867 278 101 32 chr4 16724877 16725577 -185602770 + L2 LINE L2 2563 3312 -1 2706 120 81 15 chr4 16725658 16726117 -185602230 - L1PA16 LINE L1 -9 6157 5669 216 227 0 0 chr4 16726831 16726875 -185601472 - L2 LINE L2 -5 3267 3224 1460 280 50 50 chr4 16727035 16727907 -185600440 - L2 LINE L2 0 3313 2436 371 225 127 42 chr4 16727937 16728079 -185600268 + MIR SINE MIR 83 236 -26 293 339 8 25 chr4 16728184 16728305 -185600042 + MIR SINE MIR 31 149 -59 857 236 22 0 chr4 16728338 16728516 -185599831 + MER58A DNA MER1_type 40 221 -3 402 68 105 6 chr4 16729228 16729390 -185598957 + (TA)n Simple_repeat Simple_repeat 2 179 0 424 78 96 13 chr4 16729415 16729718 -185598629 + (TA)n Simple_repeat Simple_repeat 1 328 0 1555 182 28 85 chr4 16729746 16730098 -185598249 - Tigger3(Golem) DNA MER2_type -2 3027 16 32 43 0 0 chr4 16730098 16730144 -185598203 + AT_rich Low_complexity Low_complexity 1 46 0 1147 214 110 18 chr4 16730173 16730454 -185597893 + MER2 DNA MER2_type 7 313 -32 266 206 0 33 chr4 16730458 16730550 -185597797 + (TATAA)n Simple_repeat Simple_repeat 5 93 0 1773 128 44 24 chr4 16730910 16731206 -185597141 - AluSx SINE Alu -10 302 1 189 0 0 0 chr4 16731265 16731286 -185597061 + (TCCA)n Simple_repeat Simple_repeat 1 21 0 1967 106 7 11 chr4 16732317 16732599 -185595748 + AluSx SINE Alu 31 311 -1 28 0 0 0 chr4 16732969 16732997 -185595350 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr4 16733718 16733762 -185594585 + AT_rich Low_complexity Low_complexity 1 44 0 317 363 70 37 chr4 16733762 16733977 -185594370 - MIR SINE MIR -7 255 34 267 160 40 27 chr4 16733990 16734065 -185594282 + (TATATG)n Simple_repeat Simple_repeat 6 81 0 311 304 14 86 chr4 16734259 16734479 -185593868 + MIR SINE MIR 10 213 -49 621 254 36 82 chr4 16734959 16735179 -185593168 + MER63A DNA MER1_type 1 210 0 222 313 38 12 chr4 16735469 16735549 -185592798 - L2 LINE L2 -181 3091 3010 420 232 77 97 chr4 16735651 16735731 -185592616 - MIR SINE MIR -43 219 139 1324 249 135 29 chr4 16735731 16736184 -185592163 + MLT1D LTR MaLR 1 501 -4 420 232 77 97 chr4 16736184 16736310 -185592037 - MIR SINE MIR -123 139 17 4169 79 9 11 chr4 16736518 16737050 -185591297 - L1PA11 LINE L1 -2 6172 5642 323 257 37 74 chr4 16737268 16737466 -185590881 + MIR SINE MIR 30 220 -42 266 318 147 40 chr4 16738557 16738755 -185589592 - MLT1K LTR MaLR -367 221 3 220 211 0 70 chr4 16739672 16739729 -185588618 - L2 LINE L2 0 3313 3261 211 204 0 23 chr4 16740065 16740109 -185588238 + CT-rich Low_complexity Low_complexity 3 45 0 408 71 0 0 chr4 16740207 16740263 -185588084 + (GA)n Simple_repeat Simple_repeat 2 57 0 204 200 0 0 chr4 16740360 16740410 -185587937 + (TG)n Simple_repeat Simple_repeat 2 51 0 634 314 105 66 chr4 16740967 16741860 -185586487 + L1MEd LINE L1 2 929 -5190 225 239 23 79 chr4 16742082 16742172 -185586175 + MIR SINE MIR 65 148 -64 409 226 6 94 chr4 16742780 16742961 -185585386 - LTR67 LTR ERVL -21 536 372 2436 114 50 11 chr4 16743108 16743466 -185584881 - THE1C LTR MaLR -3 372 1 1269 143 24 0 chr4 16743471 16743681 -185584666 + L1MA8 LINE L1 6074 6288 -3 184 353 86 9 chr4 16743972 16744088 -185584259 + L2 LINE L2 3182 3306 -7 221 369 41 25 chr4 16744518 16744640 -185583707 - L2 LINE L2 -10 3262 3139 236 29 0 29 chr4 16744813 16744847 -185583500 + (TC)n Simple_repeat Simple_repeat 2 34 0 350 314 127 34 chr4 16745207 16745443 -185582904 - MIR SINE MIR -3 259 2 * 548 284 69 95 chr4 16745443 16746038 -185582309 - L2 LINE L2 -35 3237 2628 252 0 0 0 chr4 16746038 16746066 -185582281 + (TG)n Simple_repeat Simple_repeat 1 28 0 237 33 0 0 chr4 16746065 16746095 -185582252 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 548 284 69 95 chr4 16746066 16746231 -185582116 - L2 LINE L2 -644 2628 2522 24 0 0 0 chr4 16747089 16747113 -185581234 + AT_rich Low_complexity Low_complexity 1 24 0 223 310 35 11 chr4 16747177 16747264 -185581083 + MIR SINE MIR 29 117 -145 193 320 0 13 chr4 16747269 16747347 -185581000 - MIR SINE MIR -5 257 181 226 224 66 13 chr4 16747361 16747437 -185580910 + MIR SINE MIR 151 230 -32 1367 145 19 0 chr4 16748041 16748255 -185580092 + L1PB2 LINE L1 5934 6151 0 1296 158 5 0 chr4 16748265 16748468 -185579879 + L1MC1 LINE L1 6118 6321 -12 234 220 17 0 chr4 16748608 16748667 -185579680 + (TA)n Simple_repeat Simple_repeat 2 61 0 333 0 0 0 chr4 16748667 16748704 -185579643 + (CA)n Simple_repeat Simple_repeat 2 38 0 431 256 62 8 chr4 16748886 16749015 -185579332 + MIR SINE MIR 19 154 -108 192 125 0 0 chr4 16749326 16749358 -185578989 + (TCC)n Simple_repeat Simple_repeat 3 34 0 791 292 68 0 chr4 16749450 16749669 -185578678 + MIR SINE MIR 16 249 -13 288 274 153 8 chr4 16749689 16749813 -185578534 - MIR3 SINE MIR -63 145 4 296 279 66 41 chr4 16749890 16750012 -185578335 + L2 LINE L2 3189 3313 0 996 66 0 0 chr4 16750209 16750331 -185578016 + L1PA5 LINE L1 6032 6153 -1 2986 89 18 0 chr4 16750331 16750720 -185577627 + L1PA10 LINE L1 5769 6167 -1 206 246 35 88 chr4 16751088 16751202 -185577145 - MIR SINE MIR -70 192 85 598 206 48 7 chr4 16751481 16751627 -185576720 + MIR SINE MIR 4 155 -107 258 298 70 18 chr4 16751626 16751740 -185576607 + L3 LINE CR1 1351 1470 -107 * 239 257 158 0 chr4 16751797 16751898 -185576449 - MIR3 SINE MIR -87 121 5 297 313 78 36 chr4 16751923 16752064 -185576283 - MER5B DNA MER1_type -5 173 23 2424 193 26 15 chr4 16752064 16752525 -185575822 - MLT1C LTR MaLR 0 467 2 297 313 78 36 chr4 16752525 16752549 -185575798 - MER5B DNA MER1_type -155 23 1 209 212 153 12 chr4 16752610 16752695 -185575652 - MER5A DNA MER1_type -77 112 16 22 56 0 0 chr4 16753239 16753275 -185575072 + GC_rich Low_complexity Low_complexity 1 36 0 627 200 90 0 chr4 16754308 16754463 -185573884 - MIR SINE MIR -8 254 86 305 242 75 8 chr4 16754496 16754616 -185573731 + MIR SINE MIR 65 192 -70 313 254 45 27 chr4 16754859 16754969 -185573378 + MIR3 SINE MIR 67 178 -30 423 293 62 9 chr4 16755085 16755243 -185573104 - MIR SINE MIR -62 146 19 1012 166 78 29 chr4 16755941 16756146 -185572201 + AluJo SINE Alu 58 272 -40 481 88 25 0 chr4 16756147 16756227 -185572120 + (GA)n Simple_repeat Simple_repeat 1 82 0 23 33 0 0 chr4 16756373 16756403 -185571944 + AT_rich Low_complexity Low_complexity 1 30 0 1246 55 0 0 chr4 16756483 16756628 -185571719 - L1PA10 LINE L1 0 6168 6024 2189 92 19 11 chr4 16756628 16757048 -185571299 + L1P4 LINE L1 5051 5472 -696 231 325 92 25 chr4 16757085 16757248 -185571099 - MIR SINE MIR -13 249 76 389 235 29 52 chr4 16757518 16757654 -185570693 - L2 LINE L2 0 3313 3181 606 260 166 37 chr4 16757749 16758099 -185570248 - L2 LINE L2 -905 2409 2015 1530 247 57 46 chr4 16758531 16759093 -185569254 - L1ME3 LINE L1 -1 6161 5594 667 263 35 48 chr4 16759189 16759478 -185568869 + L1ME LINE L1 5520 5804 -317 2726 10 0 0 chr4 16759931 16760224 -185568123 + AluYa5 SINE Alu 1 293 -18 1527 215 105 33 chr4 16760341 16760769 -185567578 - MLT1C LTR MaLR -3 464 6 418 264 79 14 chr4 16761480 16761620 -185566727 - L2 LINE L2 0 3313 3165 214 26 51 26 chr4 16762168 16762207 -185566140 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 12073 33 3 1 chr4 16762207 16764330 -185564017 - L1PA3 LINE L1 -9 6146 4022 858 280 116 36 chr4 16764838 16765277 -185563070 + MLT1J LTR MaLR 31 504 -7 303 279 102 57 chr4 16765578 16765861 -185562486 - L2 LINE L2 -571 2743 2448 402 21 0 0 chr4 16765928 16765975 -185562372 + (CA)n Simple_repeat Simple_repeat 2 48 0 185 244 70 81 chr4 16766055 16766141 -185562206 + L2 LINE L2 3188 3272 0 287 275 99 0 chr4 16766750 16766841 -185561506 - L3 LINE CR1 -4 1573 1474 202 237 0 105 chr4 16767094 16767170 -185561177 - L2 LINE L2 -8 3264 3197 * 995 291 109 75 chr4 16767158 16767228 -185561119 + L2 LINE L2 1916 1982 -1331 2136 131 0 0 chr4 16767228 16767519 -185560828 - AluY SINE Alu -20 291 1 995 291 109 75 chr4 16767519 16768534 -185559813 + L2 LINE L2 1982 3033 -280 373 328 59 71 chr4 16768747 16769085 -185559262 + L2 LINE L2 2924 3257 -15 341 236 304 40 chr4 16769874 16770022 -185558325 - MIR3 SINE MIR -5 203 17 318 321 0 27 chr4 16770581 16770693 -185557654 + MER5A DNA MER1_type 4 112 -77 185 259 241 18 chr4 16770828 16770940 -185557407 + L2 LINE L2 3136 3272 0 715 99 10 0 chr4 16771642 16771743 -185556604 + MER5A DNA MER1_type 9 110 -79 366 314 70 73 chr4 16772487 16772802 -185555545 - L2 LINE L2 -48 3224 2911 6271 121 72 3 chr4 16773214 16774567 -185553780 - L1PA12 LINE L1 -1 6167 4704 309 276 75 65 chr4 16774909 16775123 -185553224 + MIR SINE MIR 5 220 -42 1671 177 0 31 chr4 16775686 16776003 -185552344 + AluJb SINE Alu 4 310 -2 438 162 0 0 chr4 16776091 16776159 -185552188 - AluS SINE Alu -15 296 229 237 93 0 0 chr4 16776308 16776351 -185551996 + LTR66 LTR ERVL 394 436 -174 793 164 0 41 chr4 16777148 16777294 -185551053 + MLT1F1 LTR MaLR 426 565 -2 21 36 0 0 chr4 16777355 16777383 -185550964 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 16777971 16778000 -185550347 + AT_rich Low_complexity Low_complexity 1 29 0 1518 140 164 7 chr4 16779279 16779572 -185548775 + MER44D DNA MER2_type 1 609 0 1021 174 62 17 chr4 16780021 16780199 -185548148 - MER5A DNA MER1_type 0 189 4 244 300 25 25 chr4 16780216 16780296 -185548051 + MIR3 SINE MIR 98 177 -31 441 130 10 110 chr4 16783642 16783742 -185544605 - FLAM_A SINE Alu -19 123 34 2220 111 10 0 chr4 16783888 16784195 -185544152 + AluSx SINE Alu 1 310 -2 25 31 0 0 chr4 16784290 16784322 -185544025 + AT_rich Low_complexity Low_complexity 1 32 0 185 283 174 22 chr4 16785329 16785421 -185542926 + MIR3 SINE MIR 90 195 -13 643 203 31 0 chr4 16789881 16790009 -185538338 - MER58A DNA MER1_type 0 150 19 260 333 26 0 chr4 16790159 16790237 -185538110 - MIR SINE MIR -157 105 26 647 269 201 19 chr4 16791505 16791814 -185536533 + MLT1I LTR MaLR 43 407 -2 699 318 90 36 chr4 16792695 16793060 -185535287 + L2 LINE L2 2929 3313 0 341 335 39 11 chr4 16793561 16793740 -185534607 + MER117 DNA MER1_type 4 187 -10 452 192 10 0 chr4 16794287 16794386 -185533961 + CT-rich Low_complexity Low_complexity 3 102 0 582 364 77 36 chr4 16794615 16795068 -185533279 + L2 LINE L2 2278 2760 -554 2152 192 103 9 chr4 16795068 16795495 -185532852 + MLT1C LTR MaLR 1 467 0 582 364 77 36 chr4 16795495 16795602 -185532745 + L2 LINE L2 2760 2861 -453 388 301 84 0 chr4 16796005 16796148 -185532199 + MIR3 SINE MIR 19 173 -35 230 308 87 47 chr4 16797337 16797509 -185530838 - MIR SINE MIR -72 190 12 272 306 88 20 chr4 16798139 16798286 -185530061 + MLT1F LTR MaLR 114 270 -279 425 299 29 15 chr4 16799030 16799167 -185529180 - MIR3 SINE MIR -54 154 16 448 230 111 15 chr4 16799401 16799536 -185528811 + MIR3 SINE MIR 10 157 -51 231 36 0 0 chr4 16799863 16799891 -185528456 + (CA)n Simple_repeat Simple_repeat 2 29 0 306 295 98 8 chr4 16800142 16800264 -185528083 - MIR SINE MIR -2 260 128 397 222 207 14 chr4 16800570 16800811 -185527536 + MLT1F LTR MaLR 279 534 -8 1609 155 104 93 chr4 16801466 16801852 -185526495 - MLT1B LTR MaLR 0 390 1 25 0 0 0 chr4 16801870 16801895 -185526452 + AT_rich Low_complexity Low_complexity 1 25 0 1479 168 50 20 chr4 16802027 16802325 -185526022 + L1MB8 LINE L1 5867 6173 -5 235 239 0 45 chr4 16802340 16802407 -185525940 + L3 LINE CR1 1512 1575 -2 247 274 0 0 chr4 16802412 16802463 -185525884 + MIR3 SINE MIR 104 154 -54 630 260 64 52 chr4 16802535 16802785 -185525562 + MIR SINE MIR 8 260 -2 317 364 31 23 chr4 16803083 16803212 -185525135 - L2 LINE L2 -4 3268 3139 457 300 21 26 chr4 16804242 16804433 -185523914 + MIR SINE MIR 20 208 -54 2683 92 3 41 chr4 16804566 16804935 -185523412 + THE1A LTR MaLR 1 355 0 908 247 17 0 chr4 16805124 16805298 -185523049 + MER45A DNA AcHobo 1 177 -1 412 277 0 0 chr4 16805720 16805803 -185522544 + L2 LINE L2 3188 3270 -2 780 266 174 13 chr4 16806592 16806971 -185521376 - LTR16A LTR ERVL -2 448 9 1137 122 0 6 chr4 16807101 16807273 -185521074 - AluSp SINE Alu -9 304 134 201 39 0 0 chr4 16807278 16807304 -185521043 + (TTA)n Simple_repeat Simple_repeat 1 26 0 2161 97 3 7 chr4 16807304 16807586 -185520761 - AluSp SINE Alu -32 281 1 186 353 12 47 chr4 16807883 16807968 -185520379 - L2 LINE L2 0 3313 3232 22 94 0 0 chr4 16808403 16808467 -185519880 + GC_rich Low_complexity Low_complexity 1 64 0 31 0 0 0 chr4 16808527 16808558 -185519789 + GC_rich Low_complexity Low_complexity 1 31 0 333 269 113 104 chr4 16808856 16809463 -185518884 - L1M2 LINE L1 -5524 1325 603 183 42 0 0 chr4 16809463 16809487 -185518860 + (GGA)n Simple_repeat Simple_repeat 3 26 0 333 269 113 104 chr4 16809487 16809677 -185518670 - L1M2 LINE L1 -6246 603 416 26 30 0 0 chr4 16809687 16809720 -185518627 + GC_rich Low_complexity Low_complexity 1 33 0 204 135 0 0 chr4 16810098 16810135 -185518212 + (CCG)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr4 16811595 16811620 -185516727 + AT_rich Low_complexity Low_complexity 1 25 0 1184 227 74 65 chr4 16812994 16813452 -185514895 + L2 LINE L2 1298 1759 -1555 1373 256 128 48 chr4 16813457 16813686 -185514661 + L2 LINE L2 2290 2499 -814 14469 114 49 74 chr4 16813686 16814786 -185513561 - Tigger1 DNA MER2_type -2 2416 1290 1813 134 0 0 chr4 16814786 16815047 -185513300 + AluSx SINE Alu 27 287 -25 14469 114 49 74 chr4 16815047 16816423 -185511924 - Tigger1 DNA MER2_type -1128 1290 2 1373 256 128 48 chr4 16816423 16817122 -185511225 + L2 LINE L2 2499 3289 -24 672 348 72 19 chr4 16817728 16818199 -185510148 + L2 LINE L2 2004 2499 -815 180 274 81 0 chr4 16818260 16818322 -185510025 + L2 LINE L2 3196 3262 -10 254 192 41 27 chr4 16818347 16818420 -185509927 + GA-rich Low_complexity Low_complexity 4 77 0 392 336 58 0 chr4 16818967 16819104 -185509243 - L2 LINE L2 0 3313 3169 193 309 138 21 chr4 16819421 16819515 -185508832 - MIR SINE MIR -79 129 25 2338 164 10 5 chr4 16819627 16820029 -185508318 + L1MA7 LINE L1 5639 6042 -249 566 123 98 0 chr4 16820032 16820154 -185508193 + L1MA7 LINE L1 6158 6291 0 292 302 99 20 chr4 16821055 16821286 -185507061 + MIR3 SINE MIR 3 244 -18 284 99 0 183 chr4 16821825 16821896 -185506451 - Charlie5 DNA MER1_type 0 2617 2560 1239 184 98 34 chr4 16821896 16822162 -185506185 - AluJo SINE Alu -18 294 12 467 171 0 0 chr4 16822167 16822272 -185506075 - Charlie5 DNA MER1_type -57 2555 2451 1594 241 56 14 chr4 16822286 16822839 -185505508 - L1M4 LINE L1 -2229 3917 3342 29 47 0 0 chr4 16822839 16822882 -185505465 + AT_rich Low_complexity Low_complexity 1 43 0 611 160 11 0 chr4 16822882 16822976 -185505371 - AluJ/FLAM SINE Alu -213 99 5 3246 233 77 9 chr4 16822982 16824093 -185504254 - L1M4 LINE L1 -2793 3353 2168 836 222 126 44 chr4 16824146 16824317 -185504030 + Charlie2a DNA MER1_type 1271 1427 -1435 2116 136 0 0 chr4 16824317 16824619 -185503728 - AluSx SINE Alu -10 302 1 836 222 126 44 chr4 16824619 16824789 -185503558 + Charlie2a DNA MER1_type 1427 1640 -1222 575 192 151 16 chr4 16824803 16825048 -185503299 + Charlie2a DNA MER1_type 2512 2789 -73 250 256 12 23 chr4 16825538 16825624 -185502723 - L2 LINE L2 -8 3264 3180 253 129 48 32 chr4 16825709 16825771 -185502576 + MER116 DNA Mariner 17 79 -1 675 268 103 19 chr4 16826753 16826966 -185501381 - MIR SINE MIR -26 236 6 238 289 74 66 chr4 16827039 16827160 -185501187 - MIR SINE MIR -78 184 63 25 51 0 0 chr4 16828247 16828286 -185500061 + AT_rich Low_complexity Low_complexity 1 39 0 485 299 221 5 chr4 16828288 16828492 -185499855 - MIR SINE MIR -7 255 8 654 194 0 28 chr4 16828610 16828754 -185499593 - AluJb SINE Alu -1 311 172 189 107 0 0 chr4 16829116 16829144 -185499203 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 2085 81 50 3 chr4 16829178 16829461 -185498886 - AluY SINE Alu -15 296 1 300 342 26 48 chr4 16829508 16829777 -185498570 - L2 LINE L2 -189 3083 2821 4140 101 28 2 chr4 16830184 16830798 -185497549 - L1PA13 LINE L1 0 6163 5534 443 294 192 0 chr4 16830828 16831005 -185497342 - MIR SINE MIR -21 241 31 598 166 19 175 chr4 16831191 16831254 -185497093 - MER5B DNA MER1_type 0 178 107 1817 171 3 3 chr4 16831254 16831563 -185496784 - AluJb SINE Alu -3 309 1 598 166 19 175 chr4 16831563 16831710 -185496637 - MER5B DNA MER1_type -71 107 1 570 233 83 22 chr4 16831715 16831895 -185496452 - MIR SINE MIR -7 255 65 32 75 0 0 chr4 16832078 16832145 -185496202 + AT_rich Low_complexity Low_complexity 1 67 0 1168 330 139 13 chr4 16832474 16833440 -185494907 + L2 LINE L2 2214 3309 -4 411 365 80 46 chr4 16833692 16834103 -185494244 - L2 LINE L2 -342 2972 2548 312 267 38 19 chr4 16834833 16834938 -185493409 + L1MC4 LINE L1 6614 6720 -1322 186 333 0 0 chr4 16835030 16835084 -185493263 - L2 LINE L2 0 3272 3219 307 246 66 74 chr4 16835133 16835255 -185493092 - MIR SINE MIR -20 242 122 1594 56 0 0 chr4 16835256 16835454 -185492893 + L1PA7 LINE L1 5946 6143 -11 216 323 77 31 chr4 16835883 16836013 -185492334 + MIR SINE MIR 77 212 -50 240 286 71 0 chr4 16836124 16836180 -185492167 + L2 LINE L2 3203 3262 -10 4662 192 58 141 chr4 16836936 16837223 -185491124 + L1MC/D LINE L1 19 328 -6212 219 36 0 0 chr4 16837223 16837251 -185491096 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4662 192 58 141 chr4 16837251 16838611 -185489736 + L1MC/D LINE L1 328 1530 -5010 2372 234 76 6 chr4 16838724 16839513 -185488834 + L1MC/D LINE L1 3043 3886 -2654 1772 143 138 22 chr4 16839523 16839894 -185488453 + MSTA LTR MaLR 15 428 0 3496 239 27 67 chr4 16839895 16841310 -185487037 + L1MC/D LINE L1 3897 5254 -1286 1322 215 60 1 chr4 16841321 16841743 -185486604 - L1M4 LINE L1 -823 5323 4855 * 1865 222 37 7 chr4 16841727 16842550 -185485797 + L1MC/D LINE L1 5248 6184 -569 269 287 98 41 chr4 16842630 16842752 -185485595 - MIR SINE MIR -108 154 26 214 313 141 0 chr4 16843972 16844100 -185484247 + L2 LINE L2 3168 3313 0 229 220 99 44 chr4 16844145 16844236 -185484111 - L1ME LINE L1 -480 5641 5546 242 320 56 56 chr4 16844419 16844653 -185483694 + MLT1K LTR MaLR 137 370 -218 341 346 76 17 chr4 16844927 16845355 -185482992 - L1ME LINE L1 -611 5567 5122 269 273 151 0 chr4 16845470 16845609 -185482738 - MIR SINE MIR -32 230 71 1677 132 148 28 chr4 16845640 16845965 -185482382 + THE1B LTR MaLR 1 364 0 1168 287 54 52 chr4 16847213 16847676 -185480671 + LTR16B LTR ERVL 1 464 0 763 255 48 5 chr4 16847844 16848032 -185480315 - MIR SINE MIR -10 252 57 243 169 52 7 chr4 16848299 16848453 -185479894 + (TA)n Simple_repeat Simple_repeat 2 162 0 319 204 151 43 chr4 16848581 16848674 -185479673 - MLT1E2 LTR MaLR -413 213 111 301 270 121 11 chr4 16848860 16849034 -185479313 - L1ME LINE L1 -1821 4325 4133 21 36 0 0 chr4 16849131 16849159 -185479188 + AT_rich Low_complexity Low_complexity 1 28 0 3267 267 99 53 chr4 16849394 16850101 -185478246 - HAL1 LINE L1 -112 2395 1722 1163 154 10 5 chr4 16850101 16850309 -185478038 + L1PA14 LINE L1 5951 6159 -2 3267 267 99 53 chr4 16850309 16851625 -185476722 - HAL1 LINE L1 -785 1722 279 2095 138 0 0 chr4 16852166 16852462 -185475885 - AluSx SINE Alu -16 296 1 312 323 105 23 chr4 16853354 16853487 -185474860 - L2 LINE L2 -5 3267 3124 343 300 45 0 chr4 16853531 16853641 -185474706 + MIR SINE MIR 44 158 -104 2506 156 2 38 chr4 16853705 16854153 -185474194 + Tigger2a DNA MER2_type 3 434 0 245 253 0 10 chr4 16854153 16854252 -185474095 + (TA)n Simple_repeat Simple_repeat 1 98 0 211 302 47 0 chr4 16854278 16854364 -185473983 + MIR SINE MIR 173 262 0 224 325 12 24 chr4 16854410 16854493 -185473854 + MIR SINE MIR 12 93 -169 1008 196 0 0 chr4 16854562 16854725 -185473622 - FAM SINE Alu -12 163 1 184 110 79 39 chr4 16854845 16854972 -185473375 + (TTATA)n Simple_repeat Simple_repeat 5 136 0 23 0 0 0 chr4 16854987 16855010 -185473337 + AT_rich Low_complexity Low_complexity 1 23 0 933 248 95 111 chr4 16855629 16856072 -185472275 - MLT1J2 LTR MaLR -8 442 3 189 107 0 0 chr4 16856184 16856212 -185472135 + (TG)n Simple_repeat Simple_repeat 2 29 0 655 75 69 0 chr4 16856212 16856371 -185471976 + (TA)n Simple_repeat Simple_repeat 2 171 0 227 381 71 32 chr4 16856680 16857058 -185471289 - L2 LINE L2 -579 2735 2343 914 86 31 99 chr4 16857340 16857451 -185470896 + MLT2A2 LTR ERVL 303 402 -51 1884 155 4 0 chr4 16857451 16857782 -185470565 + AluSx SINE Alu 4 335 0 914 86 31 99 chr4 16857782 16857831 -185470516 + MLT2A2 LTR ERVL 402 453 0 1710 237 99 21 chr4 16857875 16858353 -185469994 + MLT1E2 LTR MaLR 111 467 0 490 336 75 50 chr4 16858396 16858905 -185469442 - L2 LINE L2 -88 3225 2699 57 0 0 0 chr4 16859014 16859071 -185469276 + AT_rich Low_complexity Low_complexity 1 57 0 348 217 43 11 chr4 16859073 16859165 -185469182 + L1MC4 LINE L1 6609 6703 -1339 33 25 0 0 chr4 16859172 16859212 -185469135 + AT_rich Low_complexity Low_complexity 1 40 0 201 329 96 0 chr4 16859372 16859445 -185468902 - L3 LINE CR1 -1318 259 180 21 82 0 0 chr4 16859606 16859655 -185468692 + AT_rich Low_complexity Low_complexity 1 49 0 1462 296 105 13 chr4 16859724 16860331 -185468016 - L2 LINE L2 -666 2648 1986 272 311 50 50 chr4 16860379 16860498 -185467849 - MIR SINE MIR -74 188 70 1806 166 41 43 chr4 16861742 16862133 -185466214 - MLT1B LTR MaLR 0 390 1 186 301 229 54 chr4 16862148 16862314 -185466033 - L2 LINE L2 -1 3271 3077 2131 103 0 3 chr4 16863030 16863348 -185464999 - AluY SINE Alu 0 317 1 843 229 22 11 chr4 16864135 16864314 -185464033 + MSTB LTR MaLR 214 394 -32 2410 272 88 74 chr4 16864348 16866270 -185462077 + HAL1 LINE L1 450 2398 -109 664 203 0 8 chr4 16866578 16866706 -185461641 - MER119 DNA MER1_type 0 583 457 528 332 130 7 chr4 16867262 16867554 -185460793 - L3 LINE CR1 -12 1565 1238 632 205 11 46 chr4 16867732 16867918 -185460429 - MER104 DNA Tc2 0 180 1 1546 134 26 11 chr4 16867946 16868215 -185460132 - L1PB1 LINE L1 -1 6150 5878 371 20 0 20 chr4 16868269 16868318 -185460029 + (TG)n Simple_repeat Simple_repeat 2 49 0 907 249 65 49 chr4 16868403 16868909 -185459438 + HAL1b LINE L1 658 1171 -177 2966 214 22 17 chr4 16868928 16869563 -185458784 + MER82 DNA MER2_type 16 653 0 209 0 98 0 chr4 17071144 17071185 -185257162 + (TAATG)n Simple_repeat Simple_repeat 1 45 0 211 256 275 25 chr4 17071705 17071865 -185256482 + MIR3 SINE MIR 2 201 -7 257 370 84 33 chr4 17072012 17072371 -185255976 - L2 LINE L2 -6 3266 2890 388 275 174 0 chr4 17073792 17073941 -185254406 + MIR SINE MIR 20 194 -68 251 323 55 92 chr4 17073943 17074107 -185254240 - L2 LINE L2 0 3272 3115 251 325 86 60 chr4 17074347 17074744 -185253603 - L2 LINE L2 -584 2730 2324 376 262 271 21 chr4 17075416 17075752 -185252595 - L2 LINE L2 -985 2329 1910 253 371 57 0 chr4 17076598 17076703 -185251644 - L2 LINE L2 -20 3252 3142 2344 111 19 33 chr4 17078642 17079010 -185249337 + THE1B LTR MaLR 1 363 -1 276 175 48 0 chr4 17079064 17079127 -185249220 - L1MC4a LINE L1 -1781 6027 5962 284 0 28 0 chr4 17079127 17079163 -185249184 + (TA)n Simple_repeat Simple_repeat 2 38 0 786 251 34 17 chr4 17079397 17079636 -185248711 - L1MC4a LINE L1 -1889 5919 5677 255 295 29 9 chr4 17080857 17080962 -185247385 + MER51-int LTR ERV1 7043 7149 -667 414 220 34 14 chr4 17081307 17081449 -185246898 + MER93b LTR ERV1 61 214 -188 1243 180 3 95 chr4 17081466 17081760 -185246587 - AluJo SINE Alu -16 296 30 682 189 31 19 chr4 17081764 17081923 -185246424 + MER93a LTR ERV1 242 402 0 1696 172 31 3 chr4 17082053 17082343 -185246004 - AluJb SINE Alu -14 298 1 3127 87 21 7 chr4 17082777 17083214 -185245133 - MLT2A1 LTR ERVL -1 443 1 589 294 70 14 chr4 17083525 17083739 -185244608 + MIR SINE MIR 37 262 0 183 319 106 9 chr4 17083733 17083846 -185244501 + L2 LINE L2 2611 2734 -580 * 210 292 67 50 chr4 17083981 17084101 -185244246 + L2 LINE L2 2943 3064 -208 2271 107 0 0 chr4 17084508 17084834 -185243513 - AluSx SINE Alu 0 326 1 852 227 64 55 chr4 17085158 17085519 -185242828 - LTR16A1 LTR ERVL 0 457 94 286 361 161 4 chr4 17087592 17087822 -185240525 - L2 LINE L2 -562 2752 2487 252 363 50 61 chr4 17088845 17089097 -185239250 + L2 LINE L2 1851 2099 -1215 2549 59 0 0 chr4 17089097 17089402 -185238945 - AluY SINE Alu -6 305 1 252 363 50 61 chr4 17089402 17089526 -185238821 + L2 LINE L2 2099 2223 -1091 209 169 13 52 chr4 17089704 17089781 -185238566 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 231 315 22 22 chr4 17089802 17089894 -185238453 + MER5B DNA MER1_type 57 148 -30 644 140 9 0 chr4 17089906 17090013 -185238334 - L1PB1 LINE L1 -5 6146 6039 444 378 36 49 chr4 17090062 17090539 -185237808 + L2 LINE L2 2777 3243 -29 1425 303 143 11 chr4 17090646 17091574 -185236773 + L2 LINE L2 2232 3311 -2 2072 122 0 17 chr4 17092690 17093009 -185235338 - AluSq SINE Alu 0 313 1 26 0 0 0 chr4 17093377 17093403 -185234944 + AT_rich Low_complexity Low_complexity 1 26 0 1888 159 140 8 chr4 17093419 17093797 -185234550 - MSTA LTR MaLR 0 428 1 447 243 195 12 chr4 17094770 17094939 -185233408 - MIR SINE MIR -10 252 53 503 224 0 40 chr4 17094972 17095097 -185233250 + L2 LINE L2 2210 2329 -985 611 126 176 0 chr4 17095106 17095225 -185233122 - MSTA LTR MaLR -42 386 247 836 275 222 23 chr4 17095431 17096004 -185232343 + L2 LINE L2 2637 3313 0 365 231 115 0 chr4 17096201 17096305 -185232042 - L2 LINE L2 -7 3306 3191 459 371 20 3 chr4 17096705 17096922 -185231425 + MIR SINE MIR 20 235 -27 330 182 16 41 chr4 17096927 17097048 -185231299 + (TAA)n Simple_repeat Simple_repeat 2 119 0 257 232 18 0 chr4 17097137 17097193 -185231154 + L2 LINE L2 3210 3266 -6 22 35 0 0 chr4 17098215 17098244 -185230103 + AT_rich Low_complexity Low_complexity 1 29 0 242 182 0 18 chr4 17098552 17098607 -185229740 - MLT2D LTR ERVL 0 520 467 223 174 0 0 chr4 17098610 17098656 -185229691 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 345 75 0 0 chr4 17098656 17098709 -185229638 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 1668 210 17 11 chr4 17098710 17099067 -185229280 - MLT2D LTR ERVL -55 359 1 236 217 152 11 chr4 17099114 17099206 -185229141 + L3 LINE CR1 1129 1233 -344 543 101 13 0 chr4 17099215 17099294 -185229053 - MADE1 DNA Mariner 0 80 1 192 77 0 0 chr4 17099919 17099945 -185228402 + (TA)n Simple_repeat Simple_repeat 2 27 0 234 130 0 0 chr4 17099959 17100005 -185228342 - LTR66 LTR ERVL -171 439 394 2402 206 106 75 chr4 17100342 17100575 -185227772 - L1ME2 LINE L1 -45 6119 5895 2195 119 3 6 chr4 17100575 17100886 -185227461 - AluSx SINE Alu 0 312 3 2402 206 106 75 chr4 17100886 17102263 -185226084 - L1ME2 LINE L1 -269 5895 4475 333 68 0 0 chr4 17102305 17102349 -185225998 + (CA)n Simple_repeat Simple_repeat 1 44 0 322 321 37 25 chr4 17103430 17103592 -185224755 - MIR3 SINE MIR -5 203 40 1798 137 23 37 chr4 17104012 17104311 -185224036 + AluSx SINE Alu 1 295 -17 22 35 0 0 chr4 17104316 17104345 -185224002 + AT_rich Low_complexity Low_complexity 1 29 0 551 264 77 34 chr4 17104726 17105233 -185223114 + L1M4 LINE L1 2786 3314 -2832 394 336 62 18 chr4 17105319 17105396 -185222951 + L1M4 LINE L1 3423 3495 -2651 291 28 0 0 chr4 17105396 17105432 -185222915 + (CA)n Simple_repeat Simple_repeat 2 37 0 394 336 62 18 chr4 17105432 17105686 -185222661 + L1M4 LINE L1 3495 3773 -2373 1203 238 32 21 chr4 17106229 17106569 -185221778 + MER87 LTR ERV1 175 518 -23 294 214 36 80 chr4 17107680 17107792 -185220555 + MARNA DNA Mariner 386 492 -94 512 295 152 9 chr4 17107921 17108131 -185220216 - MIR SINE MIR -21 241 2 259 248 56 48 chr4 17108285 17108410 -185219937 - LTR67 LTR ERVL 0 557 432 282 29 0 0 chr4 17109748 17109783 -185218564 + (TG)n Simple_repeat Simple_repeat 2 36 0 305 248 137 34 chr4 17110914 17111031 -185217316 + MIR SINE MIR 118 246 -16 1635 150 85 78 chr4 17111182 17111569 -185216778 - MLT1B LTR MaLR 0 390 1 224 215 123 15 chr4 17112026 17112091 -185216256 + L2 LINE L2 3201 3272 0 221 0 35 0 chr4 17112157 17112186 -185216161 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1647 142 3 113 chr4 17112188 17112506 -185215841 - AluSx SINE Alu -19 283 1 385 273 91 0 chr4 17113095 17113238 -185215109 - MER58A DNA MER1_type 0 224 69 1773 170 167 14 chr4 17113762 17114133 -185214214 + MSTA LTR MaLR 1 428 0 9441 133 26 31 chr4 17114135 17115722 -185212625 + MSTA-int LTR MaLR 3 1580 0 1540 153 227 11 chr4 17115722 17116074 -185212273 + MSTA LTR MaLR 1 428 0 241 312 21 32 chr4 17116286 17116386 -185211961 - MER5A DNA MER1_type -26 163 54 291 248 89 57 chr4 17117167 17117324 -185211023 - LTR68 LTR ERV1 -578 162 1 789 211 75 20 chr4 17117613 17117812 -185210535 + MER63A DNA MER1_type 1 210 0 261 200 12 88 chr4 17117909 17117989 -185210358 + MLT1F1 LTR MaLR 44 117 -450 1025 247 32 7 chr4 17117995 17118278 -185210069 + L1MD3 LINE L1 7402 7691 -304 1481 133 70 17 chr4 17118808 17119108 -185209239 + MER49 LTR ERV1 1 316 -607 851 169 0 0 chr4 17119162 17119292 -185209055 - FLAM_C SINE Alu -12 131 2 3054 168 61 5 chr4 17119296 17119885 -185208462 + MER49 LTR ERV1 302 923 0 1767 137 4 0 chr4 17120736 17120991 -185207356 + MLT1C LTR MaLR 26 281 -186 2212 137 73 17 chr4 17120992 17121336 -185207011 + THE1B LTR MaLR 1 363 -1 8959 91 130 43 chr4 17121338 17122746 -185205601 + THE1B-int LTR MaLR 2 1531 -49 1008 188 66 5 chr4 17122746 17122787 -185205560 + MLT1C LTR MaLR 255 292 -175 1771 126 124 78 chr4 17122787 17123135 -185205212 + THE1B LTR MaLR 1 364 0 1008 188 66 5 chr4 17123135 17123309 -185205038 + MLT1C LTR MaLR 292 459 -8 755 301 93 43 chr4 17123916 17124606 -185203741 + L1M4 LINE L1 3840 4605 -1541 2302 97 0 7 chr4 17124606 17124915 -185203432 + AluSg SINE Alu 1 307 -3 755 301 93 43 chr4 17124915 17125312 -185203035 + L1M4 LINE L1 4605 4981 -1165 1281 171 9 5 chr4 17125327 17125544 -185202803 - AluJb SINE Alu -12 300 83 235 277 102 42 chr4 17125634 17125800 -185202547 + L1P5 LINE L1 5255 5430 -721 461 295 38 4 chr4 17126630 17126840 -185201507 - MIR SINE MIR -10 252 34 242 260 13 0 chr4 17127381 17127458 -185200889 + (TG)n Simple_repeat Simple_repeat 1 78 0 21 36 0 0 chr4 17128447 17128475 -185199872 + AT_rich Low_complexity Low_complexity 1 28 0 354 269 56 24 chr4 17128598 17128766 -185199581 - MIR SINE MIR -50 212 43 620 209 104 0 chr4 17129368 17129502 -185198845 - MIR SINE MIR -1 261 114 225 264 69 35 chr4 17129556 17129605 -185198742 + MIR SINE MIR 145 200 -62 329 244 26 0 chr4 17129605 17129683 -185198664 + MER116 DNA Mariner 1 80 0 225 264 69 35 chr4 17129683 17129720 -185198627 + MIR SINE MIR 200 234 -28 180 0 0 0 chr4 17129919 17129939 -185198408 + (TTA)n Simple_repeat Simple_repeat 2 21 0 182 279 25 101 chr4 17130184 17130263 -185198084 - MIR3 SINE MIR -22 186 114 627 326 32 65 chr4 17131037 17131408 -185196939 - L2 LINE L2 0 3272 2914 753 199 0 0 chr4 17131447 17131583 -185196764 + MER58A DNA MER1_type 9 144 0 191 206 0 0 chr4 17131627 17131661 -185196686 - MIR SINE MIR -111 151 118 474 236 28 82 chr4 17132097 17132279 -185196068 - MER113 DNA MER1_type? -5 516 345 724 266 73 34 chr4 17132281 17132330 -185196017 + MIR SINE MIR 10 56 -206 2310 206 56 23 chr4 17132330 17132850 -185195497 - MLT1F LTR MaLR -4 538 2 724 266 73 34 chr4 17132850 17133033 -185195314 + MIR SINE MIR 56 251 -11 235 180 20 40 chr4 17133253 17133303 -185195044 - MER5C DNA MER1_type -269 55 7 2263 104 10 0 chr4 17134091 17134389 -185193958 + AluSq SINE Alu 1 301 -12 1132 283 113 26 chr4 17134506 17135058 -185193289 + L1MC1 LINE L1 4 565 -5480 834 297 31 0 chr4 17135155 17135414 -185192933 + L1MC1 LINE L1 569 835 -5210 * 3129 204 157 19 chr4 17135412 17135772 -185192575 + L1MC1 LINE L1 1351 1660 -4904 302 0 26 0 chr4 17135772 17135810 -185192537 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 3129 204 157 19 chr4 17135810 17135827 -185192520 + L1MC1 LINE L1 1660 1673 -4891 8272 10 19 14 chr4 17135827 17136785 -185191562 - L1PA3 LINE L1 -2 6153 5195 3129 204 157 19 chr4 17136785 17136798 -185191549 + L1MC1 LINE L1 1673 1683 -4881 2082 113 0 7 chr4 17136798 17137104 -185191243 + AluSg SINE Alu 1 304 0 3129 204 157 19 chr4 17137104 17137611 -185190736 + L1MC1 LINE L1 1683 2377 -4187 4456 201 40 36 chr4 17137620 17138953 -185189394 + L1MC1 LINE L1 5406 6745 -6 748 181 93 21 chr4 17138959 17139152 -185189195 + L1MC3 LINE L1 7559 7765 -20 375 252 89 15 chr4 17139278 17139413 -185188934 - MIR SINE MIR -26 236 92 251 276 126 0 chr4 17139607 17139694 -185188653 + MIR SINE MIR 97 194 -68 201 196 0 0 chr4 17140788 17140844 -185187503 + GA-rich Low_complexity Low_complexity 2 57 0 720 158 0 0 chr4 17140846 17141017 -185187330 + (CA)n Simple_repeat Simple_repeat 2 172 0 180 135 0 0 chr4 17141062 17141099 -185187248 + (CA)n Simple_repeat Simple_repeat 2 38 0 509 185 0 6 chr4 17141126 17141188 -185187159 + (CA)n Simple_repeat Simple_repeat 2 63 -99 180 0 0 0 chr4 17141188 17141208 -185187139 + (GA)n Simple_repeat Simple_repeat 2 21 0 509 185 0 6 chr4 17141208 17141307 -185187040 + (CA)n Simple_repeat Simple_repeat 63 162 0 185 130 43 0 chr4 17141344 17141390 -185186957 + (CAGAGA)n Simple_repeat Simple_repeat 6 53 0 264 300 62 23 chr4 17141412 17141542 -185186805 + MLT1K LTR MaLR 420 554 -34 191 339 11 34 chr4 17142190 17142367 -185185980 - L2 LINE L2 -236 3036 2864 495 190 0 0 chr4 17142367 17142504 -185185843 + (TG)n Simple_repeat Simple_repeat 2 138 0 601 278 118 44 chr4 17143206 17143612 -185184735 + Charlie8 DNA MER1_type 107 542 -1875 2181 133 0 0 chr4 17143810 17144119 -185184228 - AluSx SINE Alu -3 309 1 391 235 87 60 chr4 17144380 17144466 -185183881 - MIR3 SINE MIR -5 203 110 2190 122 0 7 chr4 17144466 17144770 -185183577 + AluSx SINE Alu 1 302 -10 391 235 87 60 chr4 17144770 17144832 -185183515 - MIR3 SINE MIR -98 110 51 370 250 0 60 chr4 17144885 17144985 -185183362 + L2 LINE L2 3179 3272 0 219 326 44 15 chr4 17146921 17147056 -185181291 - MIR SINE MIR -96 166 28 254 229 0 0 chr4 17147736 17147784 -185180563 - L2 LINE L2 -12 3260 3213 619 328 124 14 chr4 17147818 17148166 -185180181 - L2 LINE L2 0 3313 2928 305 271 62 54 chr4 17148171 17148300 -185180047 - L2 LINE L2 0 3313 3184 1286 229 43 72 chr4 17148579 17148955 -185179392 + MLT1A1 LTR MaLR 1 365 0 244 325 74 35 chr4 17149110 17149313 -185179034 + MIR SINE MIR 47 257 -5 353 257 193 16 chr4 17149422 17149630 -185178717 - MIR SINE MIR -10 252 18 844 224 78 54 chr4 17150212 17150340 -185178007 - MLT1C LTR MaLR -160 307 184 2135 116 0 7 chr4 17150340 17150643 -185177704 - AluSx SINE Alu -11 301 1 844 224 78 54 chr4 17150643 17150809 -185177538 - MLT1C LTR MaLR -283 184 6 1703 156 23 44 chr4 17150858 17151254 -185177093 + L1MC3 LINE L1 7450 7990 -5 746 56 0 0 chr4 17151312 17151401 -185176946 - L1PA10 LINE L1 -9 6159 6071 186 313 0 0 chr4 17151665 17151729 -185176618 - L2 LINE L2 -289 2983 2920 549 261 25 6 chr4 17151960 17152117 -185176230 + MIR SINE MIR 102 261 -1 632 243 72 50 chr4 17152563 17152785 -185175562 + MIR SINE MIR 1 227 -35 400 375 48 8 chr4 17152958 17153209 -185175138 - L3 LINE CR1 -110 1467 1207 260 227 12 12 chr4 17154759 17154922 -185173425 + (TA)n Simple_repeat Simple_repeat 2 164 0 24 0 0 0 chr4 17155440 17155464 -185172883 + AT_rich Low_complexity Low_complexity 1 24 0 206 310 35 11 chr4 17155708 17155795 -185172552 + L2 LINE L2 3206 3294 -19 2225 99 0 10 chr4 17156769 17157072 -185171275 - AluY SINE Alu -11 300 1 1199 271 108 51 chr4 17157411 17158041 -185170306 + L1MC4a LINE L1 5315 5980 -1828 3187 171 12 10 chr4 17158056 17158575 -185169772 - MLT2B1 LTR ERVL 0 520 1 288 281 103 48 chr4 17158781 17158927 -185169420 - L2 LINE L2 -287 2985 2832 2509 120 11 25 chr4 17159566 17159933 -185168414 - THE1B LTR MaLR -2 362 1 343 342 38 13 chr4 17160002 17160160 -185168187 + MIR SINE MIR 64 225 -37 197 333 16 0 chr4 17160320 17160383 -185167964 + L2 LINE L2 3241 3304 -9 22 0 0 0 chr4 17160389 17160411 -185167936 + AT_rich Low_complexity Low_complexity 1 22 0 473 294 214 35 chr4 17161570 17161944 -185166403 + L2 LINE L2 2450 2890 -424 186 299 30 0 chr4 17162450 17162517 -185165830 + L2 LINE L2 3182 3250 -63 544 311 53 0 chr4 17162526 17162751 -185165596 + MIR SINE MIR 7 243 -19 301 314 119 63 chr4 17162830 17163082 -185165265 + L2 LINE L2 3006 3271 -1 568 271 85 17 chr4 17163333 17163510 -185164837 + MIR SINE MIR 25 213 -49 2652 291 115 37 chr4 17163540 17164210 -185164137 + HAL1 LINE L1 46 662 -1845 2195 102 3 10 chr4 17164210 17164533 -185163814 + AluSx SINE Alu 1 312 0 2652 291 115 37 chr4 17164533 17165552 -185162795 + HAL1 LINE L1 662 1868 -639 1387 247 27 28 chr4 17165560 17166274 -185162073 + L1MEc LINE L1 235 1106 -5290 478 359 89 46 chr4 17166665 17167058 -185161289 - L2 LINE L2 -36 3236 2827 265 332 89 21 chr4 17167166 17167356 -185160991 - L2 LINE L2 -685 2629 2427 387 329 107 48 chr4 17167441 17167937 -185160410 + L2 LINE L2 1196 1720 -1594 7073 138 5 15 chr4 17168481 17169598 -185158749 + HSMAR2 DNA Mariner 2 1107 -195 383 87 72 43 chr4 17169598 17169667 -185158680 - MLT1D LTR MaLR -378 127 57 324 250 14 0 chr4 17169677 17169749 -185158598 - L2 LINE L2 -9 3304 3232 1082 141 70 0 chr4 17169876 17170061 -185158286 + HSMAR2 DNA Mariner 1103 1300 -2 801 154 58 51 chr4 17170335 17170399 -185157948 - MLT1D LTR MaLR 0 505 443 180 0 0 0 chr4 17170399 17170419 -185157928 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 468 129 0 0 chr4 17170422 17170492 -185157855 - L1PA13 LINE L1 -11 6152 6083 801 154 58 51 chr4 17170492 17170579 -185157768 - MLT1D LTR MaLR -63 442 349 866 168 20 0 chr4 17170601 17170750 -185157597 - MLT1D LTR MaLR -326 179 28 212 328 225 30 chr4 17170919 17171221 -185157126 + L2 LINE L2 2910 3270 -2 508 321 23 5 chr4 17171422 17171637 -185156710 + LTR33 LTR ERVL 301 519 -2 212 288 0 41 chr4 17171768 17171841 -185156506 - MIR3 SINE MIR -3 205 136 297 240 93 0 chr4 17171957 17172032 -185156315 + MIR SINE MIR 119 200 -62 213 39 0 0 chr4 17172946 17172972 -185155375 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 287 267 27 0 chr4 17172974 17173049 -185155298 - L2 LINE L2 -5 3308 3232 354 284 60 0 chr4 17173280 17173396 -185154951 + MIR SINE MIR 119 241 -21 1325 158 4 9 chr4 17173544 17173772 -185154575 + AluJb SINE Alu 86 312 0 357 24 0 0 chr4 17173916 17173958 -185154389 + (TA)n Simple_repeat Simple_repeat 2 43 0 2162 86 50 13 chr4 17173992 17174294 -185154053 + AluSp SINE Alu 1 313 0 22 0 0 0 chr4 17174340 17174362 -185153985 + AT_rich Low_complexity Low_complexity 1 22 0 1223 254 138 32 chr4 17174389 17174975 -185153372 - Charlie7 DNA MER1_type -1898 714 67 1052 275 52 27 chr4 17175138 17175607 -185152740 - L1ME3A LINE L1 -33 6137 5665 436 184 11 38 chr4 17175612 17175797 -185152550 + (TA)n Simple_repeat Simple_repeat 1 180 0 4013 270 117 36 chr4 17176274 17177286 -185151061 - L1ME3A LINE L1 -580 5584 4655 246 32 0 0 chr4 17177286 17177317 -185151030 + (TC)n Simple_repeat Simple_repeat 2 32 0 4013 270 117 36 chr4 17177317 17179290 -185149057 - L1ME3A LINE L1 -1509 4655 2329 832 165 0 0 chr4 17179290 17179423 -185148924 - FLAM_C SINE Alu 0 133 1 4013 270 117 36 chr4 17179423 17179663 -185148684 - L1ME3A LINE L1 -3835 2329 2110 796 203 71 71 chr4 17179787 17179963 -185148384 - LTR16A1 LTR ERVL -2 455 277 985 83 0 0 chr4 17179963 17180096 -185148251 - L1PA3 LINE L1 -3 6152 6020 796 203 71 71 chr4 17180096 17180185 -185148162 - LTR16A1 LTR ERVL -179 278 190 402 229 116 10 chr4 17180240 17180485 -185147862 - L1M LINE L1 -757 5389 5152 * 5450 84 18 17 chr4 17180484 17181155 -185147192 - L1PA10 LINE L1 -10 6158 5489 200 33 0 33 chr4 17181155 17181185 -185147162 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2118 115 0 7 chr4 17181185 17181471 -185146876 - AluSq SINE Alu -27 286 3 5450 84 18 17 chr4 17181471 17181630 -185146717 - L1PA10 LINE L1 -678 5490 5326 333 322 15 63 chr4 17181660 17181865 -185146482 - L1M4 LINE L1 -1005 5141 4947 288 229 8 102 chr4 17181868 17181986 -185146361 - MLT1E2 LTR MaLR -519 107 1 1524 230 42 121 chr4 17182140 17182339 -185146008 - MLT1D-int LTR MaLR -97 1274 1061 186 43 0 0 chr4 17182339 17182362 -185145985 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1524 230 42 121 chr4 17182362 17182831 -185145516 - MLT1D-int LTR MaLR -310 1061 659 2561 213 21 42 chr4 17182892 17183565 -185144782 - MLT1D-int LTR MaLR -711 660 2 1632 202 98 5 chr4 17183569 17183979 -185144368 - MLT1D LTR MaLR -3 502 55 2199 114 7 3 chr4 17184086 17184392 -185143955 - AluSx SINE Alu -5 307 1 29 47 0 0 chr4 17184401 17184444 -185143903 + AT_rich Low_complexity Low_complexity 1 43 0 515 241 18 60 chr4 17184585 17184751 -185143596 + MIR SINE MIR 2 160 -102 187 368 0 0 chr4 17184796 17184853 -185143494 - L2 LINE L2 -91 3181 3125 219 345 97 27 chr4 17185046 17185345 -185143002 + L2 LINE L2 2468 2787 -527 747 296 200 11 chr4 17185436 17185886 -185142461 - MLT1L LTR MaLR -80 535 1 224 326 55 108 chr4 17185897 17186351 -185141996 + L2 LINE L2 2809 3238 -34 211 330 34 0 chr4 17186381 17186469 -185141878 - L2 LINE L2 -238 3034 2944 613 325 71 50 chr4 17186593 17186987 -185141360 + L2 LINE L2 2348 2759 -555 2212 99 18 0 chr4 17186987 17187265 -185141082 + AluSg SINE Alu 1 284 -21 219 36 0 0 chr4 17187265 17187293 -185141054 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 613 325 71 50 chr4 17187298 17187497 -185140850 + L2 LINE L2 2759 2953 -361 272 336 69 0 chr4 17187535 17187651 -185140696 + MIR SINE MIR 5 128 -134 420 278 176 18 chr4 17187740 17187967 -185140380 + L2 LINE L2 3028 3290 -23 197 323 61 10 chr4 17187997 17188096 -185140251 + L2 LINE L2 2763 2866 -448 432 312 66 54 chr4 17191057 17191480 -185136867 + LTR67 LTR ERVL 103 530 -27 1100 202 112 83 chr4 17191585 17192139 -185136208 - L1MC4 LINE L1 0 8042 7473 197 132 26 26 chr4 17193398 17193436 -185134911 - L2 LINE L2 -18 3295 3258 832 174 96 158 chr4 17193544 17193918 -185134429 - MLT1B LTR MaLR -39 351 1 218 347 107 0 chr4 17193999 17194074 -185134273 + L2 LINE L2 3211 3293 -20 196 294 76 22 chr4 17194164 17194256 -185134091 - L2 LINE L2 -5 3308 3212 969 222 58 18 chr4 17194258 17194533 -185133814 - LTR16A1 LTR ERVL -4 453 168 2130 294 64 36 chr4 17195145 17196109 -185132238 - HERV16 LTR ERVL -2293 2703 1713 1279 173 5 5 chr4 17196112 17196326 -185132021 + AluJo SINE Alu 78 291 -21 1942 146 7 10 chr4 17196384 17196678 -185131669 - AluJb SINE Alu -19 293 1 607 347 29 26 chr4 17196726 17197069 -185131278 - HERV16 LTR ERVL -3425 1571 1228 36 62 0 0 chr4 17197498 17197562 -185130785 + AT_rich Low_complexity Low_complexity 1 64 0 378 0 0 0 chr4 17200144 17200186 -185128161 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1942 39 0 0 chr4 17200186 17200417 -185127930 - L1PA5 LINE L1 -16 6138 5908 999 302 54 56 chr4 17200481 17201126 -185127221 - HERV16 LTR ERVL -4350 646 3 660 271 100 26 chr4 17201128 17201397 -185126950 - LTR16A1 LTR ERVL 0 457 169 330 221 118 110 chr4 17201403 17201675 -185126672 - L2 LINE L2 -1583 1731 1458 501 283 57 28 chr4 17202744 17202921 -185125426 + MIR SINE MIR 20 201 -61 432 224 10 0 chr4 17203411 17203509 -185124838 + MLT2B2 LTR ERVL 1 99 -416 2595 189 25 12 chr4 17203555 17204126 -185124221 - L1MC3 LINE L1 -8 7777 7200 237 266 64 32 chr4 17204126 17204220 -185124127 - MLT1F1 LTR MaLR -436 131 35 2625 106 9 19 chr4 17204245 17204678 -185123669 - L1PB1 LINE L1 0 6151 5723 2332 109 0 0 chr4 17204711 17205060 -185123287 - L1PB1 LINE L1 -400 5751 5403 189 0 0 0 chr4 17205072 17205093 -185123254 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 * 315 0 0 0 chr4 17205092 17205127 -185123220 + (TG)n Simple_repeat Simple_repeat 2 36 0 33017 73 10 7 chr4 17205127 17210667 -185117680 - L1PA6 LINE L1 -7 6147 595 382 260 35 81 chr4 17210995 17211728 -185116619 + L1ME3A LINE L1 3937 4637 -1509 563 292 26 26 chr4 17211760 17211986 -185116361 - LTR16B LTR ERVL -13 451 226 464 304 52 42 chr4 17212220 17212759 -185115588 + L1ME3A LINE L1 4670 5213 -933 22 70 0 0 chr4 17212772 17212815 -185115532 + AT_rich Low_complexity Low_complexity 1 43 0 1580 134 96 20 chr4 17212920 17213263 -185115084 + LTR24C LTR ERV1 242 610 -25 596 189 0 0 chr4 17213263 17213374 -185114973 + AluSg/x SINE Alu 197 307 -2 1249 236 33 64 chr4 17213419 17213935 -185114412 + Charlie2a DNA MER1_type 1586 2085 -777 4769 154 31 35 chr4 17214066 17214973 -185113374 - MER4D LTR ERV1 0 903 1 307 229 0 0 chr4 17215182 17215265 -185113082 + Charlie2 DNA MER1_type 2711 2793 -69 386 303 63 9 chr4 17215397 17215618 -185112729 + L1ME3A LINE L1 5730 5962 -208 24 32 0 0 chr4 17215801 17215832 -185112515 + AT_rich Low_complexity Low_complexity 1 31 0 391 113 70 0 chr4 17215845 17215916 -185112431 + MER50 LTR ERV1 1 76 -658 376 155 0 0 chr4 17215916 17215974 -185112373 - MER50-int LTR ERV1 -3808 3397 3340 582 219 0 9 chr4 17215974 17216088 -185112259 - MER50-int LTR ERV1 -4304 2901 2789 * 6159 134 46 21 chr4 17216085 17217805 -185110542 - MER50-int LTR ERV1 -5357 1848 7 867 149 39 0 chr4 17217805 17217959 -185110388 - MER50 LTR ERV1 -12 722 563 2189 149 31 0 chr4 17217964 17218354 -185109993 - MER50 LTR ERV1 -332 402 1 2290 191 21 12 chr4 17218889 17219370 -185108977 - MER31A LTR ERV1 0 485 1 2032 159 55 0 chr4 17219912 17220258 -185108089 + MLT1A1 LTR MaLR 1 365 0 239 242 55 22 chr4 17220433 17220524 -185107823 - MER103 DNA DNA -45 121 28 536 62 25 0 chr4 17220580 17220660 -185107687 + (TTCC)n Simple_repeat Simple_repeat 1 82 0 336 221 70 12 chr4 17221358 17221444 -185106903 - MIR SINE MIR -93 169 79 227 204 93 0 chr4 17223025 17223079 -185105268 - L2 LINE L2 -37 3276 3218 838 240 44 99 chr4 17223856 17224352 -185103995 + MLT1H LTR MaLR 79 547 -2 2717 146 12 32 chr4 17225365 17225859 -185102488 + MER31A LTR ERV1 1 484 -1 606 263 113 31 chr4 17226805 17227132 -185101215 + MLT1H LTR MaLR 183 536 -13 220 269 39 0 chr4 17227615 17227667 -185100680 + L2 LINE L2 3122 3175 -97 218 294 37 61 chr4 17227862 17228025 -185100322 - L3b LINE CR1 -134 1449 1291 532 290 52 68 chr4 17228237 17228489 -185099858 - MIR SINE MIR -12 250 3 189 294 228 11 chr4 17228601 17228693 -185099654 + MIR SINE MIR 38 149 -59 25 51 0 0 chr4 17228767 17228806 -185099541 + AT_rich Low_complexity Low_complexity 1 39 0 1593 214 28 21 chr4 17228962 17229349 -185098998 + MLT1B LTR MaLR 1 390 0 216 314 12 12 chr4 17229771 17229857 -185098490 + MIR3 SINE MIR 77 162 -46 487 250 70 17 chr4 17229896 17230068 -185098279 - Charlie8 DNA MER1_type -2155 262 82 6731 60 14 55 chr4 17230360 17232184 -185096163 - SVA Other Other -589 1382 1 571 256 55 55 chr4 17232566 17232839 -185095508 - L2 LINE L2 0 3313 3041 298 309 62 41 chr4 17233539 17233733 -185094614 - MLT1L LTR MaLR -415 200 3 421 298 53 8 chr4 17233734 17233865 -185094482 + L2 LINE L2 3136 3272 0 334 218 26 0 chr4 17234903 17234981 -185093366 + MIR SINE MIR 78 157 -105 471 78 0 0 chr4 17234997 17235061 -185093286 + (TA)n Simple_repeat Simple_repeat 1 64 0 240 255 0 0 chr4 17235125 17235176 -185093171 + L2 LINE L2 3244 3294 -19 291 290 32 16 chr4 17235885 17236009 -185092338 + L2 LINE L2 2680 2805 -509 456 276 147 6 chr4 17236014 17236184 -185092163 - MER3 DNA MER1_type 0 209 16 371 299 160 14 chr4 17236253 17236534 -185091813 + L2 LINE L2 2992 3313 0 289 307 23 0 chr4 17237415 17237503 -185090844 + MIR SINE MIR 11 100 -162 2198 146 102 128 chr4 17237624 17238084 -185090263 + MER21B LTR ERV1 1 446 -417 1658 155 7 61 chr4 17238084 17238381 -185089966 - AluJo SINE Alu -30 282 2 2198 146 102 128 chr4 17238381 17238468 -185089879 + MER21B LTR ERV1 446 534 -329 2098 126 0 3 chr4 17238468 17238754 -185089593 - AluSx SINE Alu -27 285 1 1285 211 32 13 chr4 17239543 17239855 -185088492 + MER33 DNA MER1_type 3 320 -4 233 250 0 0 chr4 17240116 17240168 -185088179 - MIR SINE MIR -59 149 98 182 62 31 0 chr4 17240173 17240205 -185088142 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 45291 40 0 2 chr4 17240206 17246367 -185081980 - L1PA4 LINE L1 0 6155 4 320 188 0 12 chr4 17246722 17246802 -185081545 + (TA)n Simple_repeat Simple_repeat 2 80 0 188 225 0 0 chr4 17247697 17247737 -185080610 - L2 LINE L2 -20 3293 3254 186 189 0 0 chr4 17248560 17248597 -185079750 + CT-rich Low_complexity Low_complexity 1 37 0 2061 97 8 0 chr4 17248782 17249049 -185079298 + AluSx SINE Alu 1 269 -43 1201 115 50 25 chr4 17249152 17249352 -185078995 - MSTA LTR MaLR -223 205 1 22 35 0 0 chr4 17249731 17249760 -185078587 + AT_rich Low_complexity Low_complexity 1 29 0 184 315 19 0 chr4 17249822 17249876 -185078471 - L2 LINE L2 -89 3183 3129 2042 124 185 6 chr4 17250227 17250590 -185077757 + MSTA LTR MaLR 1 428 0 301 178 111 14 chr4 17250590 17250692 -185077655 - MLT1J LTR MaLR -320 126 1 339 229 0 0 chr4 17251590 17251673 -185076674 + Charlie2 DNA MER1_type 2711 2793 -69 419 276 43 0 chr4 17252307 17252423 -185075924 + MER5C DNA MER1_type 4 124 -200 215 273 0 0 chr4 17252980 17253035 -185075312 + CT-rich Low_complexity Low_complexity 3 57 0 291 336 6 0 chr4 17254204 17254347 -185074000 - MIR SINE MIR -62 146 47 446 308 90 14 chr4 17254710 17254921 -185073426 + L2 LINE L2 2723 2949 -365 677 257 11 6 chr4 17254935 17255118 -185073229 + MIR SINE MIR 76 259 -3 276 345 52 35 chr4 17255145 17255377 -185072970 + L2 LINE L2 2950 3185 -128 387 0 0 0 chr4 17255410 17255453 -185072894 + (T)n Simple_repeat Simple_repeat 1 43 0 1008 154 0 0 chr4 17255580 17255729 -185072618 + MSTA LTR MaLR 278 426 -2 347 269 91 35 chr4 17256359 17256556 -185071791 - L2 LINE L2 0 3313 3106 6645 45 20 0 chr4 17256985 17257794 -185070553 - L1PA5 LINE L1 -1 6153 5329 2576 47 3 3 chr4 17257790 17258128 -185070219 + L1PA5 LINE L1 4972 5309 -837 * 691 292 210 23 chr4 17258163 17259278 -185069069 - L2 LINE L2 -16 3297 1968 435 192 8 24 chr4 17259306 17259431 -185068916 + CT-rich Low_complexity Low_complexity 4 126 0 218 287 207 0 chr4 17261062 17261149 -185067198 + L2 LINE L2 2229 2333 -981 336 281 68 27 chr4 17261305 17261451 -185066896 + MIR SINE MIR 23 174 -88 28 0 0 0 chr4 17261485 17261513 -185066834 + AT_rich Low_complexity Low_complexity 1 28 0 1112 153 0 0 chr4 17261543 17261719 -185066628 - AluSg/x SINE Alu 0 312 137 315 387 59 11 chr4 17262037 17262223 -185066124 + L2 LINE L2 3076 3270 -2 1032 251 82 3 chr4 17262994 17263297 -185065050 + L2 LINE L2 2466 2792 -522 262 301 48 0 chr4 17263692 17263775 -185064572 + MIR SINE MIR 90 176 -86 267 266 46 18 chr4 17264827 17264936 -185063411 - MIR SINE MIR -57 205 94 250 290 94 29 chr4 17264939 17265077 -185063270 - MIR SINE MIR -60 202 56 200 323 15 0 chr4 17265094 17265159 -185063188 + L2 LINE L2 3248 3313 0 436 274 18 9 chr4 17267037 17267150 -185061197 - MER81 DNA DNA 0 114 1 196 250 89 0 chr4 17267198 17267254 -185061093 + MIR SINE MIR 29 89 -173 263 322 28 42 chr4 17268546 17268689 -185059658 - L1ME LINE L1 -561 5560 5420 350 219 94 78 chr4 17269422 17269550 -185058797 - L2 LINE L2 0 3313 3184 302 342 26 0 chr4 17269779 17269896 -185058451 - MIR SINE MIR -91 171 52 271 345 26 0 chr4 17270769 17270882 -185057465 + MIR3 SINE MIR 1 116 -92 208 0 62 0 chr4 17272420 17272452 -185055895 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 207 114 0 0 chr4 17272730 17272765 -185055582 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 256 263 12 12 chr4 17272768 17272848 -185055499 - MIR SINE MIR -10 252 173 2283 82 4 0 chr4 17272949 17273230 -185055117 - AluY SINE Alu -29 282 1 186 306 181 14 chr4 17273231 17273303 -185055044 + L2 LINE L2 3196 3279 -34 231 299 75 0 chr4 17273557 17273624 -185054723 + MIR3 SINE MIR 126 197 -11 342 45 0 0 chr4 17273715 17273759 -185054588 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 191 245 0 41 chr4 17273837 17273886 -185054461 - L2 LINE L2 0 3272 3226 1265 214 31 0 chr4 17274582 17274811 -185053536 - MER8 DNA MER2_type 0 239 4 331 222 0 12 chr4 17275278 17275359 -185052988 - MER116 DNA Mariner 0 80 1 2152 68 0 0 chr4 17275623 17275886 -185052461 - AluY SINE Alu -11 300 38 354 138 0 0 chr4 17275986 17276044 -185052303 + (CA)n Simple_repeat Simple_repeat 2 59 0 1284 281 41 20 chr4 17276121 17276609 -185051738 - L1MC/D LINE L1 -2014 5794 5297 477 312 57 76 chr4 17276929 17277442 -185050905 - L1MC/D LINE L1 -1210 4936 4434 205 171 0 0 chr4 17277467 17277502 -185050845 + (CATATA)n Simple_repeat Simple_repeat 1 35 0 524 308 41 31 chr4 17277585 17278004 -185050343 - L1MC/D LINE L1 -1813 4333 3911 622 319 30 5 chr4 17278062 17278290 -185050057 - MIR SINE MIR 0 262 28 971 172 10 35 chr4 17279019 17279217 -185049130 - AluSg/x SINE Alu 0 312 120 2579 53 0 31 chr4 17279654 17279975 -185048372 + AluY SINE Alu 1 311 0 25 31 0 0 chr4 17280081 17280113 -185048234 + AT_rich Low_complexity Low_complexity 1 32 0 17624 34 2 1 chr4 17280187 17282967 -185045380 - L1PA3 LINE L1 -5 6150 3369 217 151 0 94 chr4 17283069 17283122 -185045225 - MIR SINE MIR -65 143 96 1554 272 126 68 chr4 17283889 17285104 -185043243 + HAL1 LINE L1 26 1310 -1197 1473 276 56 20 chr4 17285134 17285525 -185042822 + HAL1 LINE L1 1374 1791 -716 2734 133 38 21 chr4 17285525 17285946 -185042401 + MSTA LTR MaLR 1 428 0 1473 276 56 20 chr4 17285946 17286091 -185042256 + HAL1 LINE L1 1791 1929 -578 359 269 221 14 chr4 17286103 17286317 -185042030 + HAL1 LINE L1 1977 2145 -362 291 28 0 0 chr4 17286317 17286353 -185041994 + (TG)n Simple_repeat Simple_repeat 2 37 0 359 269 221 14 chr4 17286353 17286432 -185041915 + HAL1 LINE L1 2145 2331 -176 2521 145 8 0 chr4 17287343 17287715 -185040632 - THE1C LTR MaLR 0 375 1 993 173 152 20 chr4 17288650 17288847 -185039500 + MER58A DNA MER1_type 2 224 0 455 277 101 19 chr4 17288980 17289139 -185039208 - MER5A DNA MER1_type 0 189 7 568 323 69 5 chr4 17289148 17289365 -185038982 + MIR SINE MIR 20 250 -12 180 0 0 0 chr4 17289541 17289561 -185038786 + (T)n Simple_repeat Simple_repeat 1 20 0 4558 180 50 4 chr4 17289798 17290767 -185037580 - L1 LINE L1 -2557 3589 2577 2182 161 41 34 chr4 17291516 17291927 -185036420 + MLT2D LTR ERVL 1 414 0 543 230 58 92 chr4 17291951 17292212 -185036135 - L2 LINE L2 -5 3308 3057 1092 187 50 11 chr4 17292276 17293203 -185035144 - L1MD1 LINE L1 -2 6634 5673 624 50 0 0 chr4 17293204 17293284 -185035063 + (TA)n Simple_repeat Simple_repeat 2 81 0 548 311 26 21 chr4 17293389 17293582 -185034765 + LTR16C LTR ERVL 297 490 -1 10369 30 0 1 chr4 17293640 17295577 -185032770 + L1PA3 LINE L1 4219 6155 0 22 0 0 0 chr4 17295577 17295599 -185032748 + AT_rich Low_complexity Low_complexity 1 22 0 2247 239 42 8 chr4 17295752 17296402 -185031945 - L1MD1 LINE L1 -1131 5409 4738 417 201 0 125 chr4 17296403 17296547 -185031800 - L1MD1 LINE L1 -1944 4596 4471 2980 244 128 38 chr4 17296554 17297423 -185030924 - L1MD1 LINE L1 -5576 964 18 635 316 15 5 chr4 17297838 17298044 -185030303 + MIR SINE MIR 45 252 -10 1028 264 77 22 chr4 17298258 17298659 -185029688 - MLT1J LTR MaLR -20 491 69 352 267 36 67 chr4 17298947 17298990 -185029357 + MIR SINE MIR 75 118 -144 1002 209 62 24 chr4 17298990 17299201 -185029146 + MER20 DNA MER1_type 1 219 0 352 267 36 67 chr4 17299201 17299322 -185029025 + MIR SINE MIR 118 234 -28 3709 154 16 6 chr4 17299418 17300041 -185028306 - L1PA16 LINE L1 -14 6152 5524 354 304 55 28 chr4 17300136 17300317 -185028030 - MIR SINE MIR -56 206 21 2152 88 3 59 chr4 17300374 17300704 -185027643 + AluSq SINE Alu 1 313 0 1858 210 25 52 chr4 17300920 17301396 -185026951 - MLT1C LTR MaLR 0 467 5 23 0 0 0 chr4 17301692 17301715 -185026632 + AT_rich Low_complexity Low_complexity 1 23 0 186 103 0 0 chr4 17302349 17302378 -185025969 + (TG)n Simple_repeat Simple_repeat 2 30 0 314 289 126 0 chr4 17302484 17302619 -185025728 - MIR SINE MIR -4 258 107 199 347 10 20 chr4 17302837 17302935 -185025412 - MIR SINE MIR -163 99 3 2479 86 0 3 chr4 17303351 17303665 -185024682 + AluSq SINE Alu 1 313 0 2340 120 141 0 chr4 17305119 17305494 -185022853 - MSTA LTR MaLR 0 428 1 2544 182 66 26 chr4 17305499 17305999 -185022348 - MLT2B1 LTR ERVL 0 520 1 537 331 38 25 chr4 17306312 17306629 -185021718 + L1ME3A LINE L1 5625 5945 -225 2291 113 3 0 chr4 17307082 17307393 -185020954 - AluSx SINE Alu 0 312 1 253 246 16 0 chr4 17307581 17307642 -185020705 - L2 LINE L2 -8 3305 3244 1862 148 6 35 chr4 17308727 17309038 -185019309 - AluJo SINE Alu -10 302 1 337 167 0 17 chr4 17309041 17309101 -185019246 - MIR SINE MIR -98 164 106 187 31 62 0 chr4 17309114 17309146 -185019201 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 628 250 47 25 chr4 17309334 17309531 -185018816 - MIR SINE MIR -44 218 18 2423 80 3 0 chr4 17309627 17309926 -185018421 - AluSp SINE Alu -13 300 1 344 154 0 0 chr4 17310078 17310130 -185018217 - MER5B DNA MER1_type 0 178 127 3365 140 23 4 chr4 17310135 17310662 -185017685 + L1MC1 LINE L1 5779 6315 -18 715 182 16 0 chr4 17310717 17310838 -185017509 - MER5B DNA MER1_type -48 130 8 383 285 57 62 chr4 17311097 17311290 -185017057 + L2 LINE L2 2892 3083 -189 423 382 19 56 chr4 17311588 17311910 -185016437 + L2 LINE L2 2963 3272 0 240 159 23 0 chr4 17311907 17311951 -185016396 + MIR SINE MIR 218 262 0 * 26811 41 7 6 chr4 17312662 17315949 -185012398 + L1P LINE L1 4 3294 -2852 5001 160 40 4 chr4 17316049 17316876 -185011471 - Tigger1 DNA MER2_type -1561 857 1 482 144 27 9 chr4 17317348 17317459 -185010888 + CT-rich Low_complexity Low_complexity 4 116 0 1702 164 4 7 chr4 17317464 17317738 -185010609 - AluSx SINE Alu -38 274 2 3817 179 103 25 chr4 17317886 17318652 -185009695 - LTR1B LTR ERV1 0 826 1 3389 146 35 6 chr4 17319158 17319707 -185008640 - MER34B LTR ERV1 0 565 1 374 329 13 38 chr4 17320091 17320249 -185008098 + MIR SINE MIR 16 169 -93 24 32 0 0 chr4 17320554 17320585 -185007762 + AT_rich Low_complexity Low_complexity 1 31 0 270 265 137 29 chr4 17320607 17320709 -185007638 - L2 LINE L2 0 3272 3160 336 316 53 0 chr4 17321777 17321961 -185006386 + MIR SINE MIR 11 208 -54 2442 87 3 0 chr4 17321962 17322271 -185006076 + AluSp SINE Alu 1 310 -3 278 219 145 33 chr4 17322724 17322853 -185005494 - MIR SINE MIR -62 146 6 1181 185 5 0 chr4 17323156 17323340 -185005007 - MER5A DNA MER1_type -4 185 1 954 160 5 58 chr4 17323389 17323577 -185004770 + AluJb SINE Alu 120 297 -15 440 235 35 2 chr4 17323577 17323685 -185004662 + MER5B DNA MER1_type 55 176 -13 718 234 148 39 chr4 17323931 17324268 -185004079 + MER68 LTR ERV1 3 376 -186 3429 129 57 6 chr4 17324428 17324969 -185003378 + LTR24B LTR ERV1 1 569 -7 190 280 20 0 chr4 17325476 17325526 -185002821 + L3 LINE CR1 1524 1574 -3 2523 81 0 0 chr4 17325633 17325943 -185002404 + AluY SINE Alu 1 310 -1 266 333 102 0 chr4 17325979 17326087 -185002260 - MIR3 SINE MIR -54 154 36 205 237 203 0 chr4 17326169 17326228 -185002119 - MIR SINE MIR -16 246 176 324 267 23 0 chr4 17326356 17326442 -185001905 - MIR SINE MIR -3 259 172 323 267 84 46 chr4 17326736 17326867 -185001480 + MIR SINE MIR 29 164 -98 2059 136 33 41 chr4 17327202 17327591 -185000756 - MLT1B LTR MaLR -2 388 3 304 243 69 48 chr4 17327684 17327873 -185000474 + L1MC5 LINE L1 7331 7523 -438 736 279 21 21 chr4 17328071 17328311 -185000036 + L1MEc LINE L1 40 279 -6117 1681 102 8 0 chr4 17328414 17328650 -184999697 + THE1B LTR MaLR 127 364 0 687 278 75 18 chr4 17328803 17329030 -184999317 + MIR SINE MIR 21 260 -2 21 0 0 0 chr4 17329030 17329051 -184999296 + AT_rich Low_complexity Low_complexity 1 21 0 224 313 205 9 chr4 17329089 17329201 -184999146 - MIR SINE MIR -108 154 21 278 253 12 24 chr4 17329397 17329480 -184998867 - MER63 DNA MER1_type -5 1057 976 6370 98 6 9 chr4 17329635 17330621 -184997726 + L1PA11 LINE L1 5180 6162 -12 183 42 0 0 chr4 17330647 17330671 -184997676 + (GA)n Simple_repeat Simple_repeat 2 25 0 538 266 39 78 chr4 17330742 17331076 -184997271 + L1MC4 LINE L1 6749 7069 -973 1017 193 113 58 chr4 17331138 17331464 -184996883 - MER2 DNA MER2_type 0 344 1 4416 145 27 10 chr4 17331751 17332539 -184995808 + Tigger1 DNA MER2_type 1618 2418 0 797 21 0 0 chr4 17332909 17333002 -184995345 - L1PA4 LINE L1 -8 6147 6055 1770 44 0 0 chr4 17333002 17333227 -184995120 + L1PA4 LINE L1 5747 5971 -184 597 278 59 6 chr4 17333277 17333446 -184994901 - MIR SINE MIR -53 209 32 432 0 0 0 chr4 17333446 17333494 -184994853 + (TG)n Simple_repeat Simple_repeat 2 49 0 1903 135 66 0 chr4 17334272 17334561 -184993786 + AluSx SINE Alu 1 308 -4 407 202 242 24 chr4 17334631 17334755 -184993592 - MIR SINE MIR -1 261 111 1778 177 2 57 chr4 17334811 17335079 -184993268 + MLT1B LTR MaLR 7 247 -143 1936 146 24 0 chr4 17335079 17335374 -184992973 + AluSx SINE Alu 10 311 -1 1778 177 2 57 chr4 17335374 17335511 -184992836 + MLT1B LTR MaLR 247 390 0 2578 46 0 7 chr4 17335636 17335941 -184992406 + AluY SINE Alu 1 303 -8 425 269 20 60 chr4 17338725 17338874 -184989473 - MIR SINE MIR -93 169 27 22 35 0 0 chr4 17339503 17339532 -184988815 + AT_rich Low_complexity Low_complexity 1 29 0 264 288 105 20 chr4 17339668 17339974 -184988373 + L1ME4a LINE L1 4374 4705 -1441 28 71 0 0 chr4 17340220 17340276 -184988071 + AT_rich Low_complexity Low_complexity 1 56 0 2284 67 0 7 chr4 17340579 17340877 -184987470 + L1PA5 LINE L1 5853 6148 -6 421 269 62 31 chr4 17341164 17341391 -184986956 + L1ME4a LINE L1 5502 5735 -386 1664 217 92 5 chr4 17341422 17341846 -184986501 + MLT1C LTR MaLR 7 467 0 231 258 11 22 chr4 17342023 17342112 -184986235 + L1ME4a LINE L1 5961 6048 -73 321 279 45 45 chr4 17342149 17342303 -184986044 - MLT1L LTR MaLR -447 168 15 1868 169 64 6 chr4 17342369 17342712 -184985635 - MLT1A1 LTR MaLR -2 363 1 453 364 70 37 chr4 17343089 17343635 -184984712 - L2 LINE L2 -3 3310 2736 236 164 60 30 chr4 17343732 17343799 -184984548 + MLT1H LTR MaLR 477 545 -4 2292 118 0 0 chr4 17343853 17344157 -184984190 - AluSx SINE Alu -8 304 1 39 38 0 0 chr4 17344189 17344242 -184984105 + AT_rich Low_complexity Low_complexity 1 53 0 438 309 43 16 chr4 17344372 17344560 -184983787 - LTR67 LTR ERVL -88 469 277 324 276 11 11 chr4 17344657 17344744 -184983603 - LTR67 LTR ERVL -426 131 45 432 191 0 0 chr4 17345403 17345492 -184982855 + (TA)n Simple_repeat Simple_repeat 1 89 0 198 167 0 0 chr4 17345598 17345634 -184982713 + (TA)n Simple_repeat Simple_repeat 2 37 0 287 300 25 8 chr4 17345655 17345775 -184982572 + LTR16C LTR ERVL 368 489 -2 192 217 0 0 chr4 17345862 17345908 -184982439 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 182 313 31 0 chr4 17346038 17346102 -184982245 - L2 LINE L2 -37 3235 3170 228 254 0 48 chr4 17346194 17346257 -184982090 + GA-rich Low_complexity Low_complexity 4 63 0 262 96 19 19 chr4 17346383 17346435 -184981912 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 575 48 0 12 chr4 17346504 17346588 -184981759 + (GGAA)n Simple_repeat Simple_repeat 1 83 0 278 170 0 0 chr4 17346693 17346740 -184981607 - MIR SINE MIR -70 192 146 714 263 78 5 chr4 17346740 17346957 -184981390 + MIR SINE MIR 5 237 -25 2867 161 65 41 chr4 17348846 17349435 -184978912 + LTR26 LTR ERV1 1 603 0 2245 131 60 34 chr4 17349488 17350006 -184978341 + MLT2A2 LTR ERVL 1 554 0 431 191 43 11 chr4 17350015 17350109 -184978238 + MIR SINE MIR 110 206 -56 314 327 2 9 chr4 17350159 17350300 -184978047 - MIR SINE MIR -65 143 4 2776 269 34 44 chr4 17351254 17351350 -184976997 + L1MEc LINE L1 414 509 -5887 1489 118 45 0 chr4 17351350 17351570 -184976777 + MER30 DNA MER1_type 1 230 0 2776 269 34 44 chr4 17351570 17352817 -184975530 + L1MEc LINE L1 509 1743 -4653 5636 129 12 65 chr4 17352818 17353870 -184974477 + HSMAR2 DNA Mariner 305 1301 -1 609 158 105 0 chr4 17353876 17354009 -184974338 + L1MD1 LINE L1 6088 6234 -8 1553 234 69 28 chr4 17354010 17354852 -184973495 + L1MEc LINE L1 1850 2690 -3525 332 233 14 0 chr4 17354856 17354929 -184973418 - MIR SINE MIR -187 75 2 569 236 38 38 chr4 17356413 17356570 -184971777 + MIR SINE MIR 103 259 -3 449 211 28 0 chr4 17356645 17356754 -184971593 - LTR67 LTR ERVL 0 557 446 469 279 25 12 chr4 17356881 17357042 -184971305 - LTR67 LTR ERVL -306 251 89 197 260 169 0 chr4 17357077 17357154 -184971193 - L2 LINE L2 -86 3186 3097 266 351 55 30 chr4 17357617 17357819 -184970528 - L2 LINE L2 -179 3093 2887 304 273 76 82 chr4 17358115 17358456 -184969891 + MLT1J LTR MaLR 28 366 -145 993 180 159 63 chr4 17358917 17359294 -184969053 - MLT1C LTR MaLR 0 467 1 282 299 145 8 chr4 17360339 17360456 -184967891 + MIR SINE MIR 21 153 -109 1139 84 0 6 chr4 17360599 17360778 -184967569 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 180 296 74 0 chr4 17360929 17361010 -184967337 - MIR3 SINE MIR -3 205 119 189 154 0 0 chr4 17361140 17361179 -184967168 + (ATG)n Simple_repeat Simple_repeat 2 40 0 637 255 56 31 chr4 17361230 17361426 -184966921 - MIR SINE MIR -60 202 2 201 147 0 0 chr4 17361448 17361482 -184966865 + (ATG)n Simple_repeat Simple_repeat 2 35 0 635 281 46 38 chr4 17361489 17361727 -184966620 - MIR SINE MIR -10 252 13 247 294 108 15 chr4 17362386 17362590 -184965757 - LTR33A LTR ERVL 0 523 301 1341 189 0 54 chr4 17362600 17362933 -184965414 + MER33 DNA MER1_type 9 323 -1 628 254 242 21 chr4 17362941 17363326 -184965021 - LTR50 LTR ERVL -323 472 3 248 265 68 38 chr4 17363335 17363467 -184964880 - Charlie8 DNA MER1_type -2243 174 39 243 200 38 38 chr4 17363472 17363552 -184964795 + MIR3 SINE MIR 126 205 -3 387 285 53 94 chr4 17364947 17365287 -184963060 - L2 LINE L2 -1 3312 2987 2599 90 25 6 chr4 17366823 17367180 -184961167 - THE1B LTR MaLR 0 364 1 288 77 0 0 chr4 17367690 17367729 -184960618 + (T)n Simple_repeat Simple_repeat 1 39 0 21 57 0 19 chr4 17369515 17369534 -184958813 + AT_rich Low_complexity Low_complexity 1 19 -33 1581 113 162 49 chr4 17369534 17369861 -184958486 - THE1B LTR MaLR 0 364 1 21 57 0 19 chr4 17369861 17369894 -184958453 + AT_rich Low_complexity Low_complexity 19 52 0 378 352 71 24 chr4 17369952 17370415 -184957932 - L1M4 LINE L1 -1093 5053 4569 292 324 153 6 chr4 17370441 17370611 -184957736 - MIR SINE MIR 0 262 68 21 36 0 0 chr4 17370709 17370737 -184957610 + AT_rich Low_complexity Low_complexity 1 28 0 346 197 0 0 chr4 17370912 17370983 -184957364 + L1M4 LINE L1 4538 4608 -1538 739 303 54 92 chr4 17370983 17371260 -184957087 + L1M4 LINE L1 3712 3998 -2148 633 110 7 132 chr4 17371260 17371396 -184956951 - FLAM_C SINE Alu -14 119 1 739 303 54 92 chr4 17371396 17371752 -184956595 + L1M4 LINE L1 3998 4321 -1825 2128 126 10 0 chr4 17372404 17372705 -184955642 - AluSx SINE Alu -8 304 1 2173 129 0 0 chr4 17372911 17373213 -184955134 - AluSg SINE Alu -8 302 1 341 280 283 4 chr4 17373528 17373717 -184954630 + MIR SINE MIR 11 249 -13 290 285 207 14 chr4 17374034 17374329 -184954018 + L1ME4a LINE L1 5770 6121 0 203 307 147 13 chr4 17374814 17374889 -184953458 + MIR SINE MIR 68 152 -110 1802 169 37 8 chr4 17374900 17375255 -184953092 + MLT1A1 LTR MaLR 1 365 0 425 319 50 0 chr4 17375365 17375525 -184952822 + MIR SINE MIR 20 187 -75 636 283 88 36 chr4 17375551 17375802 -184952545 - MER102b DNA MER1_type -20 321 58 385 224 145 65 chr4 17375830 17376150 -184952197 + MLT1H LTR MaLR 49 370 -39 1250 99 5 35 chr4 17376440 17376641 -184951706 + THE1C-int LTR MaLR 1385 1579 -1 2276 147 16 31 chr4 17376642 17377023 -184951324 + THE1C LTR MaLR 1 375 0 200 389 74 18 chr4 17377234 17377463 -184950884 - L2 LINE L2 -182 3090 2849 440 303 170 45 chr4 17377512 17378041 -184950306 + MLT1G1 LTR MaLR 1 595 0 1080 188 103 32 chr4 17378082 17378452 -184949895 + MSTC LTR MaLR 1 426 -2 483 113 0 0 chr4 17378608 17378679 -184949668 + L1PA5 LINE L1 6082 6152 -2 546 261 66 127 chr4 17378868 17379340 -184949007 + LTR16A1 LTR ERVL 15 457 0 259 288 90 9 chr4 17379680 17379791 -184948556 + MIR SINE MIR 131 250 -12 232 323 91 0 chr4 17379798 17379897 -184948450 + L2 LINE L2 3138 3245 -27 2803 149 32 38 chr4 17379965 17380440 -184947907 + MER70A LTR ERVL 1 472 0 21 57 0 0 chr4 17382154 17382189 -184946158 + AT_rich Low_complexity Low_complexity 1 35 0 188 219 0 0 chr4 17383056 17383097 -184945250 + L3b LINE CR1 1279 1319 -264 246 167 0 0 chr4 17384350 17384410 -184943937 + (TG)n Simple_repeat Simple_repeat 1 60 0 317 307 97 0 chr4 17385575 17385689 -184942658 - MER117 DNA MER1_type -10 187 63 435 246 14 56 chr4 17385712 17385854 -184942493 + L2 LINE L2 3134 3269 -3 208 273 55 55 chr4 17388570 17388680 -184939667 - MIR SINE MIR -28 234 125 1634 197 7 0 chr4 17388850 17389155 -184939192 + AluJb SINE Alu 1 307 -5 180 304 18 0 chr4 17389203 17389259 -184939088 + L2 LINE L2 3001 3057 -215 354 261 11 11 chr4 17389784 17389876 -184938471 + L2 LINE L2 3221 3312 -1 25 31 0 0 chr4 17390215 17390247 -184938100 + AT_rich Low_complexity Low_complexity 1 32 0 313 198 20 20 chr4 17390496 17390597 -184937750 + CT-rich Low_complexity Low_complexity 3 103 0 558 327 24 6 chr4 17390654 17390822 -184937525 + MIR3 SINE MIR 1 171 -37 246 193 0 0 chr4 17391337 17391394 -184936953 + (CA)n Simple_repeat Simple_repeat 1 57 0 192 48 71 0 chr4 17391458 17391500 -184936847 + A-rich Low_complexity Low_complexity 2 46 0 232 320 32 115 chr4 17392203 17392515 -184935832 + L2 LINE L2 2926 3211 -61 344 275 73 51 chr4 17392587 17392717 -184935630 + MER5A DNA MER1_type 7 144 -45 3578 159 113 6 chr4 17392717 17393354 -184934993 + MER39 LTR ERV1 1 705 -2 344 275 73 51 chr4 17393354 17393401 -184934946 + MER5A DNA MER1_type 144 188 -1 3325 152 29 0 chr4 17393938 17394457 -184933890 + L1PA16 LINE L1 5629 6162 -4 197 241 74 0 chr4 17394929 17394983 -184933364 + MIR SINE MIR 151 208 -54 391 236 45 11 chr4 17395079 17395168 -184933179 - L2 LINE L2 -12 3260 3169 468 51 0 0 chr4 17396553 17396612 -184931735 + (TGGA)n Simple_repeat Simple_repeat 3 61 0 483 185 157 0 chr4 17397268 17397376 -184930971 + MER58B DNA MER1_type 217 341 0 425 160 87 93 chr4 17399239 17399389 -184928958 + LTR33A LTR ERVL 1 149 -374 1888 189 62 36 chr4 17399390 17399840 -184928507 - MLT1C LTR MaLR 0 467 6 445 261 113 41 chr4 17399851 17400139 -184928208 + LTR33A LTR ERVL 147 523 0 561 306 67 0 chr4 17400228 17400437 -184927910 + MIR SINE MIR 40 262 0 303 71 0 0 chr4 17400530 17400572 -184927775 + (TG)n Simple_repeat Simple_repeat 2 43 0 1863 159 75 0 chr4 17400573 17400893 -184927454 - MER2 DNA MER2_type 0 345 2 481 205 26 113 chr4 17401335 17401486 -184926861 - MLT2C1 LTR ERVL 0 397 260 402 229 0 57 chr4 17401451 17401556 -184926791 - Tigger7 DNA MER2_type -30 2457 2359 * 2040 159 30 0 chr4 17401549 17401882 -184926465 - Tigger7 DNA MER2_type -1940 547 205 1310 205 31 0 chr4 17401932 17402161 -184926186 - Tigger7 DNA MER2_type -485 248 13 461 278 124 72 chr4 17402448 17402754 -184925593 - L2 LINE L2 -19 3253 2932 675 267 16 53 chr4 17403840 17404087 -184924260 - L2 LINE L2 0 3313 3076 484 304 35 6 chr4 17404117 17404287 -184924060 + MLT1D LTR MaLR 1 175 -330 2705 194 10 41 chr4 17404287 17404869 -184923478 + MLT2B3 LTR ERVL 1 451 -2 1276 210 89 30 chr4 17404869 17405189 -184923158 + MLT1D LTR MaLR 166 505 0 680 127 196 13 chr4 17405230 17405388 -184922959 + MER53 DNA DNA 3 189 0 331 250 19 115 chr4 17405396 17405604 -184922743 - L2 LINE L2 -312 3001 2814 240 108 0 0 chr4 17405604 17405641 -184922706 + HSMAR1 DNA Mariner 1 37 -1250 2333 86 39 6 chr4 17405641 17405978 -184922369 + L1PB1 LINE L1 5440 5787 -364 1222 126 45 9 chr4 17405998 17406220 -184922127 + L1MA9 LINE L1 6078 6307 -5 197 65 32 0 chr4 17406251 17406282 -184922065 + (TA)n Simple_repeat Simple_repeat 1 32 0 2468 126 3 3 chr4 17406283 17406633 -184921714 + L1PB1 LINE L1 5801 6150 -1 493 104 0 0 chr4 17406643 17406710 -184921637 - MADE1 DNA Mariner -13 67 1 192 200 50 33 chr4 17406729 17406789 -184921558 - L2 LINE L2 -527 2787 2727 181 214 54 0 chr4 17407397 17407453 -184920894 - MIR SINE MIR -125 137 79 182 156 0 31 chr4 17458333 17458365 -184869982 + L2 LINE L2 3025 3055 -258 * 189 318 183 0 chr4 17458364 17458490 -184869857 - L2 LINE L2 -7 3306 3158 713 297 98 4 chr4 17458541 17458777 -184869570 - MIR SINE MIR -3 259 2 507 362 18 9 chr4 17459031 17459255 -184869092 + MIR SINE MIR 37 262 0 23 0 0 0 chr4 17459785 17459808 -184868539 + AT_rich Low_complexity Low_complexity 1 23 0 293 240 96 89 chr4 17460312 17460458 -184867889 + MIR SINE MIR 31 177 -85 455 345 56 40 chr4 17461095 17461344 -184867003 + MIR SINE MIR 2 254 -8 408 40 0 0 chr4 17463768 17463818 -184864529 + (TA)n Simple_repeat Simple_repeat 1 50 0 210 37 0 0 chr4 17463817 17463844 -184864503 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 183 204 0 0 chr4 17464777 17464826 -184863521 + A-rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr4 17468384 17468412 -184859935 + AT_rich Low_complexity Low_complexity 1 28 0 992 252 41 125 chr4 17469407 17469933 -184858414 + MLT1G1 LTR MaLR 24 590 -5 198 103 0 0 chr4 17470176 17470205 -184858142 + (T)n Simple_repeat Simple_repeat 1 29 0 293 266 0 0 chr4 17470208 17470272 -184858075 + MLT1K LTR MaLR 525 588 0 1887 213 60 14 chr4 17470412 17470895 -184857452 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chr4 17471579 17471600 -184856747 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 17472898 17472920 -184855427 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 17473313 17473344 -184855003 + AT_rich Low_complexity Low_complexity 1 31 0 558 317 48 63 chr4 17473480 17473945 -184854402 - L2 LINE L2 -166 3147 2682 248 311 0 0 chr4 17474071 17474132 -184854215 - L2 LINE L2 -52 3220 3160 495 359 97 4 chr4 17474290 17474549 -184853798 - L3 LINE CR1 -748 829 547 1468 184 62 7 chr4 17475176 17475464 -184852883 - AluJo SINE Alu -8 304 1 207 69 0 0 chr4 17475830 17475859 -184852488 + (TA)n Simple_repeat Simple_repeat 2 30 0 403 318 45 17 chr4 17477124 17477300 -184851047 + MLT1J2 LTR MaLR 256 436 -14 336 327 65 39 chr4 17477397 17477657 -184850690 - L1MD2 LINE L1 -368 5991 5725 426 293 45 25 chr4 17477665 17477822 -184850525 - L1MD2 LINE L1 -2187 5621 5462 604 314 16 0 chr4 17478757 17478945 -184849402 + MIR SINE MIR 51 241 -21 183 338 142 20 chr4 17478994 17479142 -184849205 + L2 LINE L2 3107 3272 0 198 0 0 0 chr4 17479514 17479536 -184848811 + (A)n Simple_repeat Simple_repeat 1 22 0 26546 133 11 30 chr4 17480253 17486096 -184842251 + L1PA8A LINE L1 1 5783 -663 2735 20 0 3 chr4 17486096 17486401 -184841946 + AluYa5 SINE Alu 1 304 -7 26546 133 11 30 chr4 17486401 17487049 -184841298 + L1PA8A LINE L1 5783 6442 -4 22 0 0 0 chr4 17487052 17487074 -184841273 + AT_rich Low_complexity Low_complexity 1 22 0 612 289 15 5 chr4 17487147 17487348 -184840999 + MIR SINE MIR 10 212 -50 389 261 149 27 chr4 17487369 17487557 -184840790 + L2 LINE L2 3103 3313 0 26 0 0 0 chr4 17487600 17487626 -184840721 + AT_rich Low_complexity Low_complexity 1 26 0 329 343 32 95 chr4 17489240 17489448 -184838899 + L2 LINE L2 2926 3103 -169 345 244 89 44 chr4 17489448 17489628 -184838719 - MER5A DNA MER1_type 0 189 2 329 343 32 95 chr4 17489628 17489789 -184838558 + L2 LINE L2 3103 3272 0 232 233 0 0 chr4 17489790 17489833 -184838514 + (TG)n Simple_repeat Simple_repeat 2 44 0 227 167 42 0 chr4 17489835 17489883 -184838464 - L1MC4 LINE L1 -1339 6703 6654 2287 122 91 49 chr4 17490049 17490458 -184837889 + MSTA LTR MaLR 1 426 -2 368 367 8 0 chr4 17491378 17491498 -184836849 + L2 LINE L2 3112 3232 -40 1634 191 3 23 chr4 17492864 17493163 -184835184 - AluJo SINE Alu -15 297 5 453 83 125 14 chr4 17493271 17493343 -184835004 - MADE1 DNA Mariner 0 80 1 194 250 105 13 chr4 17493879 17493955 -184834392 - L2 LINE L2 -524 2790 2708 417 274 53 0 chr4 17494343 17494456 -184833891 + L2 LINE L2 3190 3308 -5 2116 106 3 0 chr4 17494627 17494945 -184833402 + AluSx SINE Alu 1 319 0 213 39 0 0 chr4 17495073 17495099 -184833248 + (CA)n Simple_repeat Simple_repeat 2 27 0 336 278 75 29 chr4 17495380 17495553 -184832794 + L1MA9 LINE L1 6084 6264 -48 905 138 0 0 chr4 17495573 17495703 -184832644 - FLAM_C SINE Alu -8 135 6 199 54 54 0 chr4 17495725 17495762 -184832585 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 326 331 31 0 chr4 17495781 17495911 -184832436 - MIR SINE MIR -26 236 103 369 338 14 7 chr4 17496292 17496437 -184831910 + L2 LINE L2 2722 2867 -447 399 260 114 8 chr4 17496740 17496863 -184831484 + L2 LINE L2 3178 3313 0 349 264 62 23 chr4 17497379 17497508 -184830839 - MIR SINE MIR -54 208 75 516 245 77 0 chr4 17497960 17498103 -184830244 + MIR SINE MIR 71 224 -38 198 103 0 0 chr4 17498789 17498818 -184829529 + (CAT)n Simple_repeat Simple_repeat 2 30 0 341 311 1 23 chr4 17498844 17498956 -184829391 - MIR SINE MIR -43 165 56 673 258 6 36 chr4 17498960 17499165 -184829182 + MLT1E LTR MaLR 1 196 -359 27187 113 52 7 chr4 17499947 17504082 -184824265 + L1PA7 LINE L1 11 4332 -1814 5999 44 0 1 chr4 17504082 17504756 -184823591 + L1PA6 LINE L1 5472 6149 -5 * 7901 85 8 0 chr4 17504751 17506611 -184821736 + L1PA7 LINE L1 4316 6154 0 280 302 12 0 chr4 17506659 17506745 -184821602 + MER117 DNA MER1_type 5 91 -106 317 285 31 39 chr4 17507444 17507576 -184820771 - MIR3 SINE MIR -27 181 49 225 0 0 0 chr4 17508611 17508636 -184819711 + (T)n Simple_repeat Simple_repeat 1 25 0 257 292 158 33 chr4 17508764 17509004 -184819343 - L2 LINE L2 0 3313 3044 720 256 30 47 chr4 17509201 17509435 -184818912 + MIR SINE MIR 21 250 -12 324 347 41 34 chr4 17509983 17510130 -184818217 - L2 LINE L2 0 3272 3125 21 0 0 0 chr4 17510246 17510267 -184818080 + AT_rich Low_complexity Low_complexity 1 21 0 2021 125 7 0 chr4 17510788 17511069 -184817278 - AluSp SINE Alu -28 285 3 789 301 4 4 chr4 17511855 17512084 -184816263 - MIR SINE MIR 0 262 34 2320 179 65 7 chr4 17512691 17513094 -184815253 - MSTB LTR MaLR 0 426 1 181 340 0 0 chr4 17514045 17514092 -184814255 + L2 LINE L2 3144 3190 -82 429 200 59 0 chr4 17514341 17514426 -184813921 + MER91B DNA MER1_type 40 129 -61 280 236 0 154 chr4 17514444 17514554 -184813793 + MER91B DNA MER1_type 88 180 -10 386 319 29 67 chr4 17514562 17514800 -184813547 + MIR SINE MIR 33 261 -1 2245 116 0 10 chr4 17515731 17516041 -184812306 - AluSx SINE Alu -5 307 1 2826 10 0 3 chr4 17516566 17516876 -184811471 + AluYb8 SINE Alu 1 309 -9 322 335 139 6 chr4 17517043 17517201 -184811146 + MIR SINE MIR 8 186 -76 333 269 0 37 chr4 17517715 17517823 -184810524 + MLT1H LTR MaLR 59 162 -387 2981 180 63 12 chr4 17518174 17518763 -184809584 + L1MB8 LINE L1 5551 6169 -9 258 314 153 16 chr4 17519311 17519435 -184808912 + L2 LINE L2 3127 3267 -5 243 311 61 44 chr4 17519445 17519599 -184808748 - MIR SINE MIR -60 148 35 230 0 0 32 chr4 17520710 17520741 -184807606 + (GA)n Simple_repeat Simple_repeat 1 30 0 446 200 285 38 chr4 17520884 17521055 -184807292 + MIR SINE MIR 34 245 -17 859 271 20 24 chr4 17521411 17521658 -184806689 + MIR SINE MIR 17 262 0 210 329 14 0 chr4 17521704 17521774 -184806573 - L2 LINE L2 -1 3312 3242 1581 194 18 0 chr4 17523270 17523553 -184804794 - AluJo SINE Alu -19 293 6 2585 50 0 3 chr4 17527208 17527511 -184800836 - AluY SINE Alu -9 302 1 2861 214 59 24 chr4 17527737 17528500 -184799847 + Charlie5 DNA MER1_type 1 790 -1822 378 185 0 0 chr4 17528529 17528594 -184799753 + Charlie5 DNA MER1_type 2519 2583 -29 769 321 138 18 chr4 17528665 17529048 -184799299 + L2 LINE L2 2548 2976 -338 610 242 45 22 chr4 17529833 17530011 -184798336 - Charlie8 DNA MER1_type -2233 184 3 413 299 43 6 chr4 17530033 17530197 -184798150 - MIR SINE MIR -6 256 87 219 114 0 0 chr4 17530290 17530325 -184798022 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 255 240 0 60 chr4 17530904 17531004 -184797343 + L1MC4 LINE L1 6610 6703 -1339 578 189 45 0 chr4 17531291 17531402 -184796945 + MER20 DNA MER1_type 1 116 -103 190 288 14 129 chr4 17531618 17531757 -184796590 + MIR SINE MIR 75 197 -65 201 133 0 0 chr4 17531780 17531810 -184796537 + (CCA)n Simple_repeat Simple_repeat 2 31 0 371 276 0 0 chr4 17531858 17531945 -184796402 - L2 LINE L2 0 3272 3186 877 196 103 14 chr4 17532692 17532906 -184795441 + MIR SINE MIR 9 241 -21 230 279 164 25 chr4 17533105 17533227 -184795120 + L3b LINE CR1 1322 1460 -123 2403 138 11 27 chr4 17533837 17534207 -184794140 + THE1B LTR MaLR 1 364 0 1146 209 5 14 chr4 17534558 17534768 -184793579 + MER63A DNA MER1_type 3 210 0 180 312 46 73 chr4 17534902 17535011 -184793336 + L2 LINE L2 3155 3260 -12 2213 170 28 0 chr4 17535379 17535732 -184792615 + MLT1A1 LTR MaLR 3 365 0 2329 103 0 6 chr4 17536565 17536876 -184791471 - AluSc SINE Alu 0 309 1 1458 195 53 55 chr4 17537014 17537455 -184790892 + MLT1C LTR MaLR 13 498 -7 291 266 179 6 chr4 17538681 17538821 -184789526 - MIR SINE MIR -78 184 16 235 239 28 14 chr4 17539007 17539078 -184789269 + MER117 DNA MER1_type 72 143 -54 706 214 41 83 chr4 17539285 17539551 -184788796 - MER112 DNA MER1_type 0 256 2 249 257 163 74 chr4 17539671 17539873 -184788474 - L3 LINE CR1 -255 1322 1103 236 231 15 15 chr4 17539911 17539976 -184788371 - MIR SINE MIR 0 262 198 329 318 52 44 chr4 17540175 17540436 -184787911 - MLT1K LTR MaLR -243 345 13 337 320 167 0 chr4 17540453 17540609 -184787738 - MIR SINE MIR -80 182 1 370 307 12 48 chr4 17540870 17541036 -184787311 - MIR SINE MIR -61 201 42 927 234 11 0 chr4 17541226 17541414 -184786933 + MER58A DNA MER1_type 35 224 0 639 296 24 24 chr4 17541950 17542163 -184786184 + MIR SINE MIR 50 262 0 193 263 35 0 chr4 17542163 17542220 -184786127 - MIR SINE MIR -13 249 191 202 237 197 0 chr4 17542639 17542715 -184785632 + MIR SINE MIR 122 212 -50 594 307 22 26 chr4 17543391 17543619 -184784728 - MIR SINE MIR -34 228 2 180 77 0 0 chr4 17544115 17544141 -184784206 + (CCTG)n Simple_repeat Simple_repeat 2 27 0 * 554 191 25 29 chr4 17544138 17544379 -184783968 + CT-rich Low_complexity Low_complexity 1 240 0 1088 140 38 11 chr4 17544955 17545141 -184783206 + MER20 DNA MER1_type 24 214 -5 233 290 89 40 chr4 17545843 17545967 -184782380 - MIR SINE MIR -98 164 35 195 182 68 0 chr4 17546011 17546055 -184782292 + L2 LINE L2 3219 3265 -7 321 68 0 0 chr4 17546099 17546143 -184782204 + (CA)n Simple_repeat Simple_repeat 1 44 0 1186 202 32 12 chr4 17546389 17546636 -184781711 - L1MD2 LINE L1 -1 6358 6107 236 329 61 12 chr4 17546801 17546883 -184781464 - L2 LINE L2 -81 3191 3106 21 0 0 0 chr4 17546932 17546953 -184781394 + AT_rich Low_complexity Low_complexity 1 21 0 204 243 0 86 chr4 17547795 17547865 -184780482 - L2 LINE L2 -21 3292 3229 188 239 75 88 chr4 17548123 17548282 -184780065 - L2 LINE L2 -216 3056 2900 * 288 291 25 82 chr4 17548279 17548437 -184779910 + MIR SINE MIR 36 184 -78 362 121 15 0 chr4 17550599 17550665 -184777682 + GA-rich Low_complexity Low_complexity 2 68 0 739 210 55 45 chr4 17550717 17550917 -184777430 - MIR SINE MIR -8 254 53 1305 247 60 11 chr4 17551279 17551627 -184776720 + MLT1A1 LTR MaLR 1 365 0 532 332 59 13 chr4 17551777 17552015 -184776332 - MIR SINE MIR -3 259 11 1827 255 83 57 chr4 17552275 17552874 -184775473 + MLT1E3 LTR MaLR 1 615 -9 562 79 0 0 chr4 17552926 17553002 -184775345 - AluY SINE Alu -1 309 234 1309 77 0 6 chr4 17553011 17553181 -184775166 - AluY SINE Alu -142 169 1 276 351 104 19 chr4 17554699 17554853 -184773494 + MIR3 SINE MIR 35 201 -7 1058 231 77 5 chr4 17556119 17556327 -184772020 - MER58A DNA MER1_type 0 224 2 306 335 31 25 chr4 17556518 17556679 -184771668 + MIR3 SINE MIR 24 185 -23 347 56 19 0 chr4 17556682 17556736 -184771611 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 214 287 160 0 chr4 17556798 17556892 -184771455 + MIR SINE MIR 98 206 -56 1990 143 0 10 chr4 17557077 17557370 -184770977 + AluSx SINE Alu 1 290 -22 258 269 0 15 chr4 17557681 17557748 -184770599 - MIR SINE MIR -111 151 86 180 97 0 0 chr4 17558036 17558067 -184770280 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1564 197 59 36 chr4 17558485 17558842 -184769505 + MLT1A1 LTR MaLR 1 501 -4 209 316 29 79 chr4 17559353 17559492 -184768855 - MIR SINE MIR -127 135 4 21 0 0 0 chr4 17559885 17559906 -184768441 + AT_rich Low_complexity Low_complexity 1 21 0 743 269 118 56 chr4 17560219 17560651 -184767696 - LTR33A LTR ERVL 0 523 65 417 299 67 0 chr4 17560871 17561005 -184767342 + MIR SINE MIR 46 188 -74 355 164 0 0 chr4 17561559 17561614 -184766733 + AluSq/x SINE Alu 71 125 -178 3203 109 7 70 chr4 17561714 17561786 -184766561 - L1PA8A LINE L1 -579 5552 5477 2748 26 0 0 chr4 17561786 17562091 -184766256 - AluYa5 SINE Alu -6 305 1 3203 109 7 70 chr4 17562091 17562743 -184765604 - L1PA8A LINE L1 -654 5477 4860 9558 136 34 5 chr4 17562843 17564353 -184763994 - L1M1 LINE L1 -4868 2697 1144 224 67 0 83 chr4 17564463 17564523 -184763824 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 384 275 74 62 chr4 17564905 17565149 -184763198 - MIR SINE MIR -9 253 7 295 303 10 10 chr4 17565185 17565284 -184763063 - L2 LINE L2 -2 3270 3172 1775 91 4 24 chr4 17567259 17567512 -184760835 - AluSg SINE Alu -5 305 58 262 338 47 14 chr4 17568653 17568801 -184759546 + MIR SINE MIR 110 262 0 569 82 39 12 chr4 17569169 17569403 -184758944 + AluSx SINE Alu 1 308 -1 1502 225 15 18 chr4 17569508 17569841 -184758506 - MER58B DNA MER1_type -1 340 9 474 216 30 52 chr4 17570723 17570857 -184757490 - MER5A DNA MER1_type -22 167 37 2233 60 18 25 chr4 17571066 17571181 -184757166 + AluY SINE Alu 10 124 -187 333 0 0 0 chr4 17571181 17571218 -184757129 + (CA)n Simple_repeat Simple_repeat 2 38 0 2233 60 18 25 chr4 17571218 17571387 -184756960 + AluY SINE Alu 124 292 -19 306 279 0 13 chr4 17571653 17571732 -184756615 - L2 LINE L2 -58 3214 3137 227 302 12 35 chr4 17571820 17571906 -184756441 + L2 LINE L2 3230 3313 0 995 282 93 36 chr4 17571932 17572566 -184755781 - L1MC4a LINE L1 -1883 5925 5256 530 139 0 50 chr4 17573814 17573880 -184754467 + MER53 DNA DNA 6 67 -122 1386 169 8 37 chr4 17573880 17574123 -184754224 - MER46A DNA MER2_type 0 236 1 530 139 0 50 chr4 17574123 17574157 -184754190 + MER53 DNA DNA 67 101 -88 22 35 0 0 chr4 17574262 17574291 -184754056 + AT_rich Low_complexity Low_complexity 1 29 0 182 88 0 29 chr4 17574438 17574472 -184753875 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 640 250 12 12 chr4 17574870 17575030 -184753317 - MIR SINE MIR -52 210 51 419 337 74 10 chr4 17575378 17575580 -184752767 - MIR SINE MIR 0 262 48 423 306 100 18 chr4 17575612 17575841 -184752506 + MIR SINE MIR 14 261 -1 293 309 12 0 chr4 17575845 17575926 -184752421 + (CTA)n Simple_repeat Simple_repeat 1 82 0 216 338 71 26 chr4 17576785 17576939 -184751408 + L2 LINE L2 2924 3084 -188 181 312 26 39 chr4 17576964 17577041 -184751306 - L2 LINE L2 -18 3254 3179 348 331 46 23 chr4 17577123 17577298 -184751049 - L2 LINE L2 -189 3083 2905 263 303 20 10 chr4 17578159 17578258 -184750089 + LTR67 LTR ERVL 458 557 0 578 243 9 80 chr4 17579142 17579368 -184748979 + MLT1H LTR MaLR 21 230 -319 237 311 22 11 chr4 17579620 17579710 -184748637 + L2 LINE L2 3175 3265 -48 1776 198 3 14 chr4 17580096 17580471 -184747876 + MLT1A1 LTR MaLR 1 365 0 242 324 101 34 chr4 17580591 17580739 -184747608 - L2 LINE L2 -177 3095 2938 635 208 8 16 chr4 17582113 17582238 -184746109 + FLAM_A SINE Alu 1 124 -9 230 346 39 24 chr4 17582488 17582615 -184745732 - L2 LINE L2 -5 3267 3139 303 301 68 0 chr4 17582987 17583090 -184745257 + L2 LINE L2 3203 3312 -1 240 281 67 56 chr4 17583358 17583447 -184744900 + L2 LINE L2 3183 3272 0 293 261 20 149 chr4 17583521 17583816 -184744531 + MER102b DNA MER1_type 37 293 -48 482 262 40 0 chr4 17585429 17585578 -184742769 - L2 LINE L2 -557 2757 2603 3660 183 56 28 chr4 17585588 17586199 -184742148 + L1MB7 LINE L1 4725 5318 -866 2195 112 0 0 chr4 17586199 17586494 -184741853 + AluSg SINE Alu 14 308 -2 3660 183 56 28 chr4 17586494 17587288 -184741059 + L1MB7 LINE L1 5318 6179 -5 374 324 22 50 chr4 17587432 17587611 -184740736 - MIR SINE MIR -8 254 81 273 304 152 27 chr4 17588362 17588474 -184739873 + MIR3 SINE MIR 68 193 -15 1174 234 97 25 chr4 17588511 17588942 -184739405 - MLT1C LTR MaLR -5 462 1 497 256 74 17 chr4 17588942 17589118 -184739229 - MIR SINE MIR -3 259 74 187 179 26 0 chr4 17589259 17589298 -184739049 + L2 LINE L2 3274 3313 0 24 67 0 0 chr4 17590761 17590806 -184737541 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr4 17590876 17590904 -184737443 + AT_rich Low_complexity Low_complexity 1 28 0 282 56 0 0 chr4 17591074 17591110 -184737237 + (TAA)n Simple_repeat Simple_repeat 2 37 0 260 348 29 65 chr4 17592053 17592191 -184736156 - L2 LINE L2 -1 3271 3139 21 0 0 0 chr4 17592191 17592212 -184736135 + AT_rich Low_complexity Low_complexity 1 21 0 304 296 72 0 chr4 17592546 17592698 -184735649 - MER103 DNA DNA 0 166 4 432 108 0 54 chr4 17593524 17593598 -184734749 + MSTD LTR MaLR 4 73 -323 244 267 40 0 chr4 17593607 17593682 -184734665 + MIR SINE MIR 184 261 -1 416 268 0 0 chr4 17593747 17593844 -184734503 - MIR SINE MIR -70 192 96 1306 195 21 89 chr4 17594016 17594442 -184733905 + MLT2C1 LTR ERVL 1 397 0 578 313 52 17 chr4 17594756 17594986 -184733361 + L3 LINE CR1 1331 1568 -9 21 0 0 0 chr4 17595874 17595895 -184732452 + AT_rich Low_complexity Low_complexity 1 21 0 354 302 0 65 chr4 17595911 17596050 -184732297 + MIR3 SINE MIR 3 132 -76 496 231 88 38 chr4 17596105 17596265 -184732082 - MIR SINE MIR -46 216 49 222 294 29 0 chr4 17596695 17596763 -184731584 - L2 LINE L2 -359 2954 2885 473 182 0 0 chr4 17596763 17596840 -184731507 + Tigger5 DNA MER2_type 1 77 -2246 367 218 13 0 chr4 17596841 17596919 -184731428 - Tigger5 DNA MER2_type -3 2320 2242 * 399 210 12 0 chr4 17596909 17596990 -184731357 + Tigger5 DNA MER2_type 2242 2323 0 1738 197 55 13 chr4 17597103 17597483 -184730864 - MSTD LTR MaLR 0 396 1 628 342 53 38 chr4 17597495 17598001 -184730346 + L2 LINE L2 2802 3313 0 186 174 275 14 chr4 17598359 17598428 -184729919 + L2 LINE L2 3185 3271 -1 273 119 0 0 chr4 17599157 17599199 -184729148 + (CA)n Simple_repeat Simple_repeat 1 42 0 2909 167 11 9 chr4 17599227 17599777 -184728570 + MER89 LTR ERV1 2 552 -7 428 145 36 14 chr4 17599781 17599919 -184728428 + (TA)n Simple_repeat Simple_repeat 2 142 0 29 60 0 0 chr4 17599960 17600010 -184728337 + AT_rich Low_complexity Low_complexity 1 50 0 252 341 44 22 chr4 17600167 17600302 -184728045 + MIR SINE MIR 52 189 -73 287 305 92 67 chr4 17601755 17601919 -184726428 - MIR3 SINE MIR -4 204 37 237 183 0 33 chr4 17602290 17602350 -184725997 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 357 242 24 32 chr4 17604453 17604577 -184723770 - MIR SINE MIR -48 214 92 208 373 25 8 chr4 17604789 17604907 -184723440 - MIR SINE MIR -84 178 59 357 141 0 0 chr4 17605103 17605174 -184723173 + (GAATG)n Simple_repeat Simple_repeat 2 72 0 1036 196 50 122 chr4 17605235 17605638 -184722709 + MLT1A2 LTR MaLR 1 374 0 339 321 30 8 chr4 17607970 17608101 -184720246 + MIR SINE MIR 117 250 -12 201 175 0 0 chr4 17608235 17608275 -184720072 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 2489 84 0 0 chr4 17608613 17608923 -184719424 - AluSq SINE Alu -3 310 1 251 159 29 43 chr4 17609378 17609447 -184718900 + MLT1F1 LTR MaLR 52 119 -448 981 211 143 63 chr4 17609462 17609874 -184718473 + L1MD3 LINE L1 7384 7828 -167 193 346 105 15 chr4 17610481 17610614 -184717733 + MIR3 SINE MIR 41 185 -23 997 176 0 0 chr4 17611143 17611308 -184717039 - FRAM SINE Alu -12 164 1 406 306 77 21 chr4 17611322 17611792 -184716555 + L1ME4a LINE L1 5603 6098 -23 241 278 0 0 chr4 17612276 17612330 -184716017 + GA-rich Low_complexity Low_complexity 1 54 0 204 234 2 0 chr4 17612914 17612968 -184715379 + GA-rich Low_complexity Low_complexity 3 40 0 1845 150 42 0 chr4 17613219 17613505 -184714842 + AluSx SINE Alu 1 298 -14 301 185 0 0 chr4 17613505 17613559 -184714788 + L1MC4 LINE L1 6649 6702 -1340 331 247 0 43 chr4 17613570 17613663 -184714684 + L1MC4 LINE L1 6614 6702 -1340 219 336 25 25 chr4 17615046 17615165 -184713182 - L3 LINE CR1 -126 1451 1333 197 259 62 49 chr4 17615186 17615267 -184713080 - L2 LINE L2 -4 3268 3187 245 298 61 26 chr4 17615807 17615921 -184712426 + L2 LINE L2 3191 3308 -5 2259 108 7 0 chr4 17615944 17616284 -184712063 - AluSc SINE Alu 0 342 1 2172 108 3 3 chr4 17616922 17617210 -184711137 + AluSx SINE Alu 1 288 -24 1589 242 150 21 chr4 17617267 17617842 -184710505 + MLT1E1 LTR MaLR 2 650 -4 2115 121 0 0 chr4 17618061 17618371 -184709976 - AluSx SINE Alu 0 310 1 2409 78 0 7 chr4 17618382 17618690 -184709657 - AluY SINE Alu -5 306 1 269 358 0 0 chr4 17618709 17618776 -184709571 + MIR SINE MIR 37 103 -105 443 329 108 18 chr4 17618825 17619047 -184709300 - MIR SINE MIR -1 261 20 244 277 109 20 chr4 17619996 17620097 -184708250 - L2 LINE L2 -8 3264 3155 2041 134 0 0 chr4 17620419 17620711 -184707636 + AluSx SINE Alu 1 292 -20 212 339 122 17 chr4 17622843 17622958 -184705389 + L2 LINE L2 3146 3272 0 2151 101 51 3 chr4 17623207 17623503 -184704844 + AluSg SINE Alu 1 310 0 896 181 62 0 chr4 17623930 17624140 -184704207 - L1MA9 LINE L1 -32 6280 6058 214 356 48 19 chr4 17624203 17624307 -184704040 + L2 LINE L2 3128 3234 -38 470 197 16 25 chr4 17624583 17624705 -184703642 + MER53 DNA DNA 1 121 -68 193 203 68 51 chr4 17625648 17625707 -184702640 + L2 LINE L2 3213 3272 0 327 194 0 0 chr4 17625840 17625902 -184702445 + Alu SINE Alu 241 302 0 201 305 23 62 chr4 17626037 17626165 -184702182 - L3b LINE CR1 -166 1417 1295 221 258 15 0 chr4 17626492 17626558 -184701789 + (TTCA)n Simple_repeat Simple_repeat 2 68 0 400 270 0 86 chr4 17626608 17626771 -184701576 - MIR SINE MIR -89 173 25 182 287 70 70 chr4 17628356 17628440 -184699907 - MIR SINE MIR -16 246 160 2284 114 0 13 chr4 17628440 17628746 -184699601 - AluSx SINE Alu -10 302 1 182 287 70 70 chr4 17628746 17628790 -184699557 - MIR SINE MIR -101 161 118 492 18 0 0 chr4 17629387 17629444 -184698903 + (TG)n Simple_repeat Simple_repeat 1 57 0 201 176 274 29 chr4 17629471 17629573 -184698774 + MIR3 SINE MIR 15 141 -67 2026 115 3 30 chr4 17630077 17630382 -184697965 + AluSx SINE Alu 1 297 -15 507 232 46 46 chr4 17630549 17630700 -184697647 - L2 LINE L2 0 3313 3163 294 238 159 24 chr4 17634501 17634627 -184693720 - L2 LINE L2 -12 3301 3159 336 253 0 0 chr4 17634819 17634894 -184693453 - MIR SINE MIR -10 252 178 363 297 51 7 chr4 17634922 17635060 -184693287 + L2 LINE L2 3170 3313 0 333 305 13 58 chr4 17635071 17635228 -184693119 - MIR SINE MIR -63 145 2 304 299 19 78 chr4 17635442 17635596 -184692751 + MIR SINE MIR 67 211 -51 920 128 0 8 chr4 17635775 17635908 -184692439 + AluSx SINE Alu 1 132 -181 1107 137 0 23 chr4 17635945 17636120 -184692227 + AluSx SINE Alu 122 292 -20 2479 82 99 6 chr4 17636298 17636641 -184691706 - THE1C LTR MaLR 0 375 1 405 0 0 0 chr4 17636988 17637033 -184691314 + (CA)n Simple_repeat Simple_repeat 1 45 0 345 47 0 0 chr4 17637348 17637391 -184690956 + (CA)n Simple_repeat Simple_repeat 2 44 0 251 235 130 7 chr4 17637591 17637709 -184690638 - MIR SINE MIR -46 216 2 380 264 245 6 chr4 17637725 17637884 -184690463 + MIR SINE MIR 66 262 0 21 36 0 0 chr4 17639893 17639921 -184688426 + AT_rich Low_complexity Low_complexity 1 28 0 253 266 0 43 chr4 17640286 17640380 -184687967 - L1MC4 LINE L1 -1339 6703 6614 333 0 0 0 chr4 17640383 17640420 -184687927 + (TG)n Simple_repeat Simple_repeat 2 38 0 2273 96 14 0 chr4 17640425 17640716 -184687631 - AluSx SINE Alu -17 295 1 411 320 36 32 chr4 17640724 17640974 -184687373 - L1MC4 LINE L1 -360 5810 5589 21 0 0 0 chr4 17642108 17642129 -184686218 + AT_rich Low_complexity Low_complexity 1 21 0 799 296 4 4 chr4 17642655 17642881 -184685466 - MIR SINE MIR 0 262 37 2413 90 3 0 chr4 17643200 17643510 -184684837 - AluSq SINE Alu -2 311 1 22 80 0 0 chr4 17644192 17644242 -184684105 + AT_rich Low_complexity Low_complexity 1 50 0 488 316 47 0 chr4 17644398 17644588 -184683759 - MIR SINE MIR -61 201 3 1113 314 67 25 chr4 17645251 17645849 -184682498 + L2 LINE L2 2136 2758 -556 194 208 21 21 chr4 17646248 17646296 -184682051 + L2 LINE L2 3266 3313 0 573 258 35 76 chr4 17646501 17646815 -184681532 + L1ME4a LINE L1 5589 5889 -232 3354 128 23 2 chr4 17647124 17647609 -184680738 - MER1A DNA MER1_type -3 526 32 855 188 0 20 chr4 17647635 17647784 -184680563 - AluJo/FRAM SINE Alu -1 311 166 2309 92 3 7 chr4 17647787 17648092 -184680255 + AluSg SINE Alu 1 304 -6 545 318 10 16 chr4 17648469 17648661 -184679686 - MIR SINE MIR -59 203 13 1097 193 32 16 chr4 17648749 17648998 -184679349 + L1MB7 LINE L1 5688 5940 -244 540 245 117 0 chr4 17648999 17649162 -184679185 + MIR SINE MIR 67 248 -14 649 270 71 22 chr4 17649258 17649484 -184678863 + MIR SINE MIR 26 262 0 365 204 51 71 chr4 17649638 17649736 -184678611 + L2 LINE L2 3136 3231 -41 271 290 14 0 chr4 17650016 17650085 -184678262 + MIR SINE MIR 33 102 -106 182 254 200 0 chr4 17650132 17650187 -184678160 + MIR3 SINE MIR 115 180 -28 587 315 25 68 chr4 17650466 17650768 -184677579 - L2 LINE L2 0 3313 3030 1061 192 37 28 chr4 17650768 17650982 -184677365 - MER20 DNA MER1_type -2 217 2 587 315 25 68 chr4 17650982 17651076 -184677271 - L2 LINE L2 -283 3030 2934 348 328 106 46 chr4 17651043 17651559 -184676788 - L2 LINE L2 -49 3223 2672 * 705 261 32 16 chr4 17651568 17651756 -184676591 + MIR SINE MIR 65 255 -7 278 347 113 16 chr4 17652440 17652564 -184675783 + L2 LINE L2 3127 3262 -10 461 240 32 55 chr4 17652611 17652778 -184675569 - MIR SINE MIR -43 165 44 264 346 0 0 chr4 17652769 17652847 -184675500 + MIR3 SINE MIR 114 191 -17 * 248 273 61 10 chr4 17653454 17653553 -184674794 + L3 LINE CR1 1180 1283 -294 207 309 128 38 chr4 17653924 17654131 -184674216 - L2 LINE L2 -1 3312 3074 2210 124 0 0 chr4 17654131 17654437 -184673910 - AluSx SINE Alu -6 306 1 207 309 128 38 chr4 17654437 17654494 -184673853 - L2 LINE L2 -239 3074 3024 183 406 10 10 chr4 17654781 17654882 -184673465 - MIR SINE MIR -149 113 13 1337 192 192 6 chr4 17655645 17655989 -184672358 + MLT1C LTR MaLR 53 460 -7 281 325 133 0 chr4 17656136 17656256 -184672091 + L2 LINE L2 3137 3272 0 2181 112 0 3 chr4 17656267 17656563 -184671784 - AluSg SINE Alu -14 296 2 730 270 87 93 chr4 17656631 17657116 -184671231 - L2 LINE L2 0 3313 2832 23 54 0 0 chr4 17658002 17658039 -184670308 + AT_rich Low_complexity Low_complexity 1 37 0 251 176 111 65 chr4 17658122 17658230 -184670117 - MIR3 SINE MIR -92 116 4 280 308 51 0 chr4 17658245 17658323 -184670024 + MIR SINE MIR 111 192 -70 456 265 13 46 chr4 17660249 17660400 -184667947 + L2 LINE L2 3161 3306 -7 276 372 33 0 chr4 17661085 17661206 -184667141 - L2 LINE L2 -5 3267 3143 2178 113 0 3 chr4 17661247 17661538 -184666809 + AluSx SINE Alu 3 292 -20 509 189 6 63 chr4 17663192 17663351 -184664996 - L2 LINE L2 0 3313 3164 483 213 130 53 chr4 17663490 17663562 -184664785 - MIR SINE MIR -12 250 185 2086 123 3 10 chr4 17663562 17663870 -184664477 + AluSx SINE Alu 1 306 -6 483 213 130 53 chr4 17663870 17663966 -184664381 - MIR SINE MIR -77 185 69 213 349 85 23 chr4 17664096 17664225 -184664122 - MIR SINE MIR -110 152 16 781 233 135 47 chr4 17664237 17664555 -184663792 + MER7A DNA MER2_type 1 344 -2 210 37 0 0 chr4 17665162 17665189 -184663158 + (CAA)n Simple_repeat Simple_repeat 2 28 0 2243 106 0 0 chr4 17665189 17665491 -184662856 + AluSg SINE Alu 1 302 -8 340 211 105 0 chr4 17666207 17666283 -184662064 - MIR SINE MIR -25 237 154 285 192 0 0 chr4 17666815 17666867 -184661480 + MIR SINE MIR 50 101 -161 227 192 53 72 chr4 17667714 17667807 -184660540 - MIR SINE MIR -7 201 117 620 250 41 51 chr4 17668395 17668591 -184659756 + MIR SINE MIR 25 218 -44 236 219 110 27 chr4 17668618 17668691 -184659656 + MER116 DNA Mariner 1 79 -1 233 292 15 0 chr4 17668727 17668792 -184659555 + L2 LINE L2 3004 3069 -203 289 265 165 45 chr4 17669005 17669266 -184659081 - L2 LINE L2 -209 3063 2776 387 244 134 8 chr4 17669266 17669385 -184658962 + MER96 DNA MER1_type? 42 175 0 255 320 53 53 chr4 17669386 17669536 -184658811 - L2 LINE L2 -536 2778 2629 439 199 21 9 chr4 17669911 17669925 -184658422 + L1MC3 LINE L1 6619 6631 -1154 1606 164 29 4 chr4 17669925 17670220 -184658127 + AluJb SINE Alu 1 302 0 439 199 21 9 chr4 17670220 17670306 -184658041 + L1MC3 LINE L1 6631 6703 -1082 * 788 183 37 12 chr4 17670304 17670468 -184657879 + L1MC3 LINE L1 6918 7085 -700 281 161 125 40 chr4 17670468 17670565 -184657782 + MLT1F1 LTR MaLR 35 166 -383 2768 198 16 46 chr4 17670574 17670988 -184657359 + L1MC3 LINE L1 7197 7589 -196 1234 197 53 4 chr4 17670988 17671216 -184657131 + MER8 DNA MER2_type 1 239 0 2768 198 16 46 chr4 17671216 17671408 -184656939 + L1MC3 LINE L1 7589 7785 0 2325 110 0 0 chr4 17671669 17671968 -184656379 + AluSg SINE Alu 1 299 -11 482 291 0 0 chr4 17671968 17672095 -184656252 + MIR SINE MIR 80 206 -56 228 211 211 0 chr4 17672176 17672252 -184656095 - MIR SINE MIR -94 168 77 2501 64 0 10 chr4 17672754 17673067 -184655280 - AluY SINE Alu -1 310 1 994 167 5 21 chr4 17673671 17673863 -184654484 - MER53 DNA DNA 0 189 1 928 221 142 12 chr4 17674122 17674453 -184653894 + LTR37A LTR ERV1 53 426 0 2500 55 0 3 chr4 17674579 17674889 -184653458 - AluY SINE Alu -2 309 1 299 288 27 55 chr4 17675191 17675337 -184653010 + L2 LINE L2 3172 3313 0 931 55 0 0 chr4 17676565 17676674 -184651673 + THE1B LTR MaLR 1 109 -255 373 276 131 0 chr4 17677629 17677774 -184650573 + MIR SINE MIR 99 262 0 719 150 150 0 chr4 17678039 17678159 -184650188 - FRAM SINE Alu -19 157 20 22 0 0 0 chr4 17678360 17678382 -184649965 + AT_rich Low_complexity Low_complexity 1 22 0 387 171 73 0 chr4 17678568 17678650 -184649697 - Charlie8 DNA MER1_type -2152 265 178 735 223 13 46 chr4 17678749 17678948 -184649399 - MLT1A2 LTR MaLR -7 374 173 323 169 14 0 chr4 17678948 17679019 -184649328 + GA-rich Low_complexity Low_complexity 1 72 0 847 216 28 11 chr4 17679019 17679200 -184649147 - MLT1A2 LTR MaLR -187 187 4 327 340 82 19 chr4 17679906 17680112 -184648235 - MIR SINE MIR -11 251 33 254 335 103 46 chr4 17680138 17680332 -184648015 + L2 LINE L2 3044 3248 -24 752 266 15 5 chr4 17680668 17680871 -184647476 + MIR SINE MIR 18 222 -40 461 267 183 18 chr4 17682864 17683189 -184645158 + MLT1J2 LTR MaLR 77 450 0 193 29 59 0 chr4 17683631 17683665 -184644682 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 1292 144 0 10 chr4 17684806 17685014 -184643333 - MER1B DNA MER1_type 0 339 134 245 158 0 0 chr4 17685011 17685049 -184643298 - MER1B DNA MER1_type -299 38 1 * 203 284 0 30 chr4 17685052 17685119 -184643228 + MIR SINE MIR 160 224 -38 302 80 20 0 chr4 17686497 17686547 -184641800 + (TA)n Simple_repeat Simple_repeat 1 51 0 297 0 0 0 chr4 17686546 17686579 -184641768 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 1934 132 45 3 chr4 17686913 17687200 -184641147 - AluSx SINE Alu -13 299 1 374 293 8 30 chr4 17687200 17687333 -184641014 + MIR SINE MIR 120 249 -13 2555 46 7 0 chr4 17687777 17688084 -184640263 - AluY SINE Alu -2 309 1 319 259 22 44 chr4 17688405 17688540 -184639807 + LTR67 LTR ERVL 426 557 0 219 309 69 117 chr4 17689477 17689768 -184638579 + L2 LINE L2 2930 3206 -66 2232 106 10 7 chr4 17689840 17690141 -184638206 + AluSx SINE Alu 1 302 -10 2270 121 3 6 chr4 17690312 17690625 -184637722 - AluSq SINE Alu -1 312 1 237 378 35 35 chr4 17690881 17691053 -184637294 + L2 LINE L2 3092 3263 -9 609 236 40 40 chr4 17691540 17691714 -184636633 - MIR SINE MIR 0 262 89 836 262 87 88 chr4 17691802 17692356 -184635991 - MLT1H1 LTR MaLR -2 553 1 198 342 25 13 chr4 17692785 17692864 -184635483 + MIR3 SINE MIR 84 163 -45 306 252 133 56 chr4 17692932 17693007 -184635340 - MER112 DNA MER1_type -106 154 86 315 0 0 0 chr4 17693007 17693042 -184635305 + (TG)n Simple_repeat Simple_repeat 2 36 0 306 252 133 56 chr4 17693042 17693109 -184635238 - MER112 DNA MER1_type -174 86 1 195 42 0 0 chr4 17693375 17693399 -184634948 + (A)n Simple_repeat Simple_repeat 1 24 0 641 276 183 29 chr4 17694197 17694574 -184633773 - L2 LINE L2 0 3313 2879 2600 39 0 19 chr4 17695291 17695603 -184632744 - AluY SINE Alu -5 306 1 216 0 0 0 chr4 17695661 17695685 -184632662 + (A)n Simple_repeat Simple_repeat 1 24 0 207 250 250 64 chr4 17695922 17696062 -184632285 + MIR SINE MIR 39 204 -58 2098 92 17 17 chr4 17696437 17696730 -184631617 - AluSx SINE Alu -19 293 1 336 309 13 54 chr4 17696744 17696893 -184631454 - MIR SINE MIR -2 260 118 225 191 16 63 chr4 17697128 17697191 -184631156 - MIR SINE MIR -62 146 87 246 62 0 0 chr4 17698124 17698156 -184630191 + (TG)n Simple_repeat Simple_repeat 1 32 0 295 268 143 0 chr4 17698365 17698477 -184629870 - MIR SINE MIR 0 262 135 323 299 42 87 chr4 17698703 17699084 -184629263 - L2 LINE L2 -1 3312 2949 27 62 0 0 chr4 17699891 17699939 -184628408 + AT_rich Low_complexity Low_complexity 1 48 0 228 70 35 35 chr4 17700056 17700113 -184628234 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 598 323 68 64 chr4 17702632 17703362 -184624985 + HAL1 LINE L1 57 975 -1532 21 0 0 0 chr4 17703394 17703415 -184624932 + AT_rich Low_complexity Low_complexity 1 21 0 305 339 21 12 chr4 17703415 17703586 -184624761 + MIR SINE MIR 19 188 -66 2316 102 0 19 chr4 17703739 17704052 -184624295 + AluSc SINE Alu 1 307 -2 1933 153 46 22 chr4 17704071 17704437 -184623910 + THE1C LTR MaLR 1 375 0 315 243 75 26 chr4 17704975 17705091 -184623256 + MIR SINE MIR 3 121 -87 877 288 115 39 chr4 17705114 17705496 -184622851 - L2 LINE L2 -369 2945 2535 840 294 123 17 chr4 17705612 17706033 -184622314 + MLT1J LTR MaLR 42 507 -4 626 302 14 42 chr4 17706048 17706260 -184622087 - MIR SINE MIR 0 262 57 841 301 142 18 chr4 17707413 17707451 -184620896 + L2 LINE L2 2806 2838 -475 2335 99 0 0 chr4 17707451 17707755 -184620592 - AluSc SINE Alu -5 304 1 841 301 142 18 chr4 17707755 17708168 -184620179 + L2 LINE L2 2838 3313 0 446 256 31 8 chr4 17708256 17708385 -184619962 + Charlie8 DNA MER1_type 137 268 -2149 2240 99 0 0 chr4 17708461 17708754 -184619593 + AluSg SINE Alu 1 293 -17 263 278 14 42 chr4 17708766 17708838 -184619509 + L2 LINE L2 3168 3237 -35 350 294 55 0 chr4 17708865 17708974 -184619373 - MIR SINE MIR -111 151 37 1817 246 81 19 chr4 17709051 17709721 -184618626 - L1ME2 LINE L1 -7 6157 5447 440 240 16 24 chr4 17709828 17709953 -184618394 + MER63 DNA MER1_type 2 751 -85 300 303 197 19 chr4 17710601 17710809 -184617538 - MIR SINE MIR -8 254 10 242 377 150 0 chr4 17711107 17711274 -184617073 + MIR SINE MIR 58 249 -13 274 238 16 0 chr4 17711320 17711383 -184616964 + MLT1F LTR MaLR 20 83 -459 248 304 57 44 chr4 17711542 17711769 -184616578 + MLT1H1 LTR MaLR 311 540 -15 2058 157 98 0 chr4 17713067 17713456 -184614891 - MSTB1 LTR MaLR -5 427 1 287 234 25 29 chr4 17713471 17713626 -184614721 - MIR SINE MIR -112 150 34 222 288 144 0 chr4 17713657 17713768 -184614579 - MIR SINE MIR -15 247 121 180 111 0 0 chr4 17713817 17713844 -184614503 + (CA)n Simple_repeat Simple_repeat 2 28 0 327 286 108 35 chr4 17713942 17714145 -184614202 - MIR SINE MIR -16 246 29 334 317 24 32 chr4 17714495 17714618 -184613729 + MIR SINE MIR 1 122 -140 225 256 77 26 chr4 17715677 17715755 -184612592 - L3 LINE CR1 -5 1572 1491 242 313 16 0 chr4 17716692 17716756 -184611591 + MIR SINE MIR 9 73 -189 291 209 75 0 chr4 17716786 17716853 -184611494 + MIR SINE MIR 166 237 -25 220 342 13 0 chr4 17717241 17717317 -184611030 + L2 LINE L2 3197 3273 -40 228 67 0 0 chr4 17717330 17717360 -184610987 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 2206 109 17 3 chr4 17717529 17717831 -184610516 - AluSx SINE Alu -5 307 2 1513 181 40 23 chr4 17717885 17718189 -184610158 + AluJo SINE Alu 1 309 -3 205 189 0 0 chr4 17719394 17719431 -184608916 + MIR SINE MIR 222 258 -4 291 325 89 41 chr4 17719572 17719741 -184608606 - MIR SINE MIR -13 249 73 2199 89 0 20 chr4 17719742 17720045 -184608302 + AluSx SINE Alu 3 299 -13 311 361 68 35 chr4 17721083 17721449 -184606898 + L1ME LINE L1 5378 5755 -366 2286 67 3 0 chr4 17721510 17721830 -184606517 - AluY SINE Alu 0 321 1 21 0 0 0 chr4 17721920 17721941 -184606406 + AT_rich Low_complexity Low_complexity 1 21 0 433 298 55 37 chr4 17722310 17722528 -184605819 + L3 LINE CR1 1248 1469 -108 501 326 136 41 chr4 17722555 17723390 -184604957 + L2 LINE L2 2362 3310 -3 454 343 49 25 chr4 17724179 17724383 -184603964 + MIR SINE MIR 27 235 -27 424 326 76 43 chr4 17724630 17724862 -184603485 - L2 LINE L2 -866 2448 2202 270 0 0 0 chr4 17724862 17724892 -184603455 + (TG)n Simple_repeat Simple_repeat 2 31 0 424 326 76 43 chr4 17724892 17724960 -184603387 - L2 LINE L2 -1112 2202 2138 495 283 53 16 chr4 17724998 17725185 -184603162 + MER63A DNA MER1_type 1 194 -16 1366 130 0 5 chr4 17725337 17725537 -184602810 + AluSg/x SINE Alu 112 310 -2 547 279 117 6 chr4 17725960 17726139 -184602208 + MIR SINE MIR 57 255 -7 25 31 0 0 chr4 17727054 17727086 -184601261 + AT_rich Low_complexity Low_complexity 1 32 0 4073 215 14 24 chr4 17727089 17728192 -184600155 + L1MA9 LINE L1 5184 6274 -38 21 82 0 0 chr4 17728201 17728250 -184600097 + AT_rich Low_complexity Low_complexity 1 49 0 297 0 0 0 chr4 17728419 17728452 -184599895 + (CA)n Simple_repeat Simple_repeat 2 34 0 228 128 77 0 chr4 17728579 17728657 -184599690 + (TA)n Simple_repeat Simple_repeat 1 84 0 21 0 0 0 chr4 17728865 17728886 -184599461 + AT_rich Low_complexity Low_complexity 1 21 0 263 189 153 9 chr4 17728887 17728998 -184599349 + L1ME LINE L1 5277 5403 -2382 3724 195 95 18 chr4 17729028 17730112 -184598235 + Charlie1 DNA MER1_type 39 2507 -254 235 179 60 15 chr4 17730113 17730180 -184598167 + Charlie1 DNA MER1_type 2683 2752 -9 353 264 52 39 chr4 17730191 17730346 -184598001 + L1ME LINE L1 5410 5566 -600 585 238 54 36 chr4 17730372 17730540 -184597807 - MER58B DNA MER1_type 0 341 171 659 270 58 0 chr4 17730606 17730780 -184597567 - MIR SINE MIR -11 251 68 930 288 66 19 chr4 17731215 17731899 -184596448 + L2 LINE L2 2548 3311 -2 245 196 89 0 chr4 17731896 17731952 -184596395 + MIR SINE MIR 114 174 -88 * 587 216 22 8 chr4 17732015 17732149 -184596198 - MIR SINE MIR -48 214 79 367 278 176 0 chr4 17732939 17733126 -184595221 - MIR SINE MIR -11 251 32 187 304 101 0 chr4 17733687 17733756 -184594591 - L2 LINE L2 -16 3297 3222 404 252 36 36 chr4 17733758 17733897 -184594450 - MIR SINE MIR -1 261 123 219 88 0 0 chr4 17734264 17734298 -184594049 + (CA)n Simple_repeat Simple_repeat 1 34 0 264 258 8 92 chr4 17734438 17734558 -184593789 + MIR3 SINE MIR 58 167 -41 929 211 16 5 chr4 17735190 17735380 -184592967 - MER20 DNA MER1_type 0 219 28 226 234 65 0 chr4 17735679 17735756 -184592591 + L2 LINE L2 2899 2980 -292 304 290 60 0 chr4 17735874 17735974 -184592373 + MIR SINE MIR 86 191 -71 22 35 0 0 chr4 17736150 17736179 -184592168 + AT_rich Low_complexity Low_complexity 1 29 0 2405 106 3 0 chr4 17736266 17736578 -184591769 + AluSp SINE Alu 1 313 0 312 235 86 80 chr4 17737233 17737395 -184590952 - MER5A DNA MER1_type -25 164 2 435 256 151 49 chr4 17737411 17737566 -184590781 + MLT1J2 LTR MaLR 31 169 -277 2563 65 0 0 chr4 17737566 17737873 -184590474 - AluY SINE Alu -3 308 2 435 256 151 49 chr4 17737873 17738022 -184590325 + MLT1J2 LTR MaLR 169 366 -80 2282 96 3 3 chr4 17738557 17738858 -184589489 + AluSq SINE Alu 1 301 -12 1852 139 0 26 chr4 17738876 17739185 -184589162 + AluSx SINE Alu 1 301 -11 437 272 146 28 chr4 17739707 17739961 -184588386 + L2 LINE L2 2857 3140 -173 302 313 68 45 chr4 17740362 17740538 -184587809 - MIR3 SINE MIR -9 199 20 972 255 69 32 chr4 17740751 17741185 -184587162 + MLT1G1 LTR MaLR 1 512 -83 215 141 51 154 chr4 17741589 17741667 -184586680 - L2 LINE L2 -697 2617 2548 265 222 19 0 chr4 17741839 17741893 -184586454 - MER117 DNA MER1_type -142 55 1 519 228 0 0 chr4 17742713 17742893 -184585454 + (ATG)n Simple_repeat Simple_repeat 1 180 0 203 100 0 25 chr4 17742909 17742949 -184585398 + (ATG)n Simple_repeat Simple_repeat 3 41 0 584 228 24 130 chr4 17742952 17743198 -184585149 - MIR SINE MIR -22 240 21 281 341 104 39 chr4 17743403 17743585 -184584762 - MIR SINE MIR -63 199 6 443 290 15 8 chr4 17744215 17744346 -184584001 - MIR3 SINE MIR -7 201 70 2196 89 3 3 chr4 17744542 17744848 -184583499 - AluSq SINE Alu 0 306 1 3552 193 51 24 chr4 17745002 17745532 -184582815 - MER63C DNA MER1_type -243 817 258 2348 88 0 7 chr4 17745532 17745837 -184582510 - AluSx SINE Alu -9 303 1 3552 193 51 24 chr4 17745837 17746090 -184582257 - MER63C DNA MER1_type -802 258 13 219 42 0 83 chr4 17746210 17746258 -184582089 + (TTTTTA)n Simple_repeat Simple_repeat 2 45 0 287 245 0 0 chr4 17746267 17746347 -184582000 + MER63 DNA MER1_type 459 537 -523 287 282 49 55 chr4 17746347 17746510 -184581837 + L2 LINE L2 3131 3292 -21 467 305 63 93 chr4 17747016 17747318 -184581029 + L3 LINE CR1 1174 1466 -111 22 35 0 0 chr4 17747548 17747577 -184580770 + AT_rich Low_complexity Low_complexity 1 29 0 906 201 65 11 chr4 17747816 17748049 -184580298 - L1MB7 LINE L1 -265 5916 5665 34 24 0 0 chr4 17748155 17748196 -184580151 + AT_rich Low_complexity Low_complexity 1 41 0 235 165 72 72 chr4 17748259 17748356 -184579991 + HsTC2 DNA Tc2 7 103 -1795 1558 223 72 24 chr4 17748385 17748883 -184579464 + HsTC2 DNA Tc2 1274 1795 -103 22 56 0 0 chr4 17749232 17749268 -184579079 + AT_rich Low_complexity Low_complexity 1 36 0 225 270 40 0 chr4 17749280 17749354 -184578993 + MER5A DNA MER1_type 54 130 -59 21 36 0 0 chr4 17749409 17749437 -184578910 + AT_rich Low_complexity Low_complexity 1 28 0 918 198 0 6 chr4 17750822 17750989 -184577358 - FRAM SINE Alu -12 164 1 258 293 73 0 chr4 17751307 17751389 -184576958 - MIR SINE MIR -112 150 63 229 204 0 0 chr4 17751649 17751693 -184576654 - L2 LINE L2 -8 3305 3262 381 293 89 71 chr4 17752297 17752794 -184575553 + L2 LINE L2 2548 3058 -255 184 413 22 11 chr4 17752952 17753044 -184575303 + L2 LINE L2 3142 3234 -38 2344 196 69 42 chr4 17753210 17753716 -184574631 + MLT2B1 LTR ERVL 1 520 0 415 288 131 6 chr4 17754194 17754354 -184573993 + MER91A DNA MER1_type 4 183 -13 1981 74 4 0 chr4 17754595 17754838 -184573509 + AluY SINE Alu 57 300 -11 243 150 0 0 chr4 17755051 17755091 -184573256 + MIR SINE MIR 105 144 -118 460 330 58 9 chr4 17755104 17755349 -184572998 + MIR SINE MIR 3 252 -10 200 283 0 0 chr4 17755937 17755983 -184572364 + (TG)n Simple_repeat Simple_repeat 2 47 0 269 360 0 0 chr4 17756042 17756128 -184572219 + L2 LINE L2 3102 3187 -85 189 74 0 0 chr4 17758050 17758077 -184570270 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 666 253 13 7 chr4 17758109 17758263 -184570084 - MIR SINE MIR -8 254 100 198 293 24 49 chr4 17758458 17758540 -184569807 + L2 LINE L2 2935 3014 -258 466 301 96 13 chr4 17758669 17758898 -184569449 - MIR SINE MIR -9 253 6 1222 173 26 68 chr4 17758999 17759265 -184569082 + AluJb SINE Alu 47 301 -11 1474 173 33 43 chr4 17759862 17760162 -184568185 + AluJb SINE Alu 13 309 -3 256 206 109 11 chr4 17760248 17760340 -184568007 + L1ME LINE L1 5797 5897 -224 2621 52 0 3 chr4 17760667 17760975 -184567372 + AluY SINE Alu 1 307 -4 201 121 0 0 chr4 17761135 17761168 -184567179 + (A)n Simple_repeat Simple_repeat 1 33 0 304 265 71 10 chr4 17761205 17761303 -184567044 + MIR3 SINE MIR 97 200 -8 22 0 0 0 chr4 17761678 17761700 -184566647 + AT_rich Low_complexity Low_complexity 1 22 0 318 322 29 1 chr4 17762734 17762837 -184565510 - MIR SINE MIR -76 132 31 180 0 0 0 chr4 17762977 17762997 -184565350 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 273 98 0 0 chr4 17762996 17763037 -184565310 + (CA)n Simple_repeat Simple_repeat 1 41 0 433 278 150 38 chr4 17763560 17763826 -184564521 - L2 LINE L2 -1 3312 3017 497 353 107 0 chr4 17764002 17764328 -184564019 - L2 LINE L2 -368 2946 2586 27 29 0 0 chr4 17765109 17765143 -184563204 + AT_rich Low_complexity Low_complexity 1 34 0 2347 105 0 0 chr4 17765216 17765521 -184562826 - AluSg SINE Alu -2 308 4 371 312 5 48 chr4 17765843 17766029 -184562318 + MIR SINE MIR 75 252 -10 198 383 70 31 chr4 17766104 17766232 -184562115 + L2 LINE L2 3097 3229 -43 21 0 0 0 chr4 17766316 17766337 -184562010 + AT_rich Low_complexity Low_complexity 1 21 0 197 241 17 69 chr4 17768714 17768772 -184559575 - L2 LINE L2 -10 3303 3249 186 43 0 0 chr4 17769038 17769061 -184559286 + (A)n Simple_repeat Simple_repeat 1 23 0 211 196 0 22 chr4 17769523 17769569 -184558778 + GA-rich Low_complexity Low_complexity 2 46 0 324 70 0 0 chr4 17771816 17771859 -184556488 + (TA)n Simple_repeat Simple_repeat 2 44 0 180 0 0 0 chr4 17772467 17772487 -184555860 + (CAGG)n Simple_repeat Simple_repeat 2 21 0 813 144 6 17 chr4 17772551 17772732 -184555615 + GA-rich Low_complexity Low_complexity 2 180 0 243 0 0 0 chr4 17772732 17772759 -184555588 + (GA)n Simple_repeat Simple_repeat 1 27 0 207 0 0 0 chr4 17773357 17773380 -184554967 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 189 74 0 0 chr4 17774882 17774909 -184553438 + (CA)n Simple_repeat Simple_repeat 1 27 0 180 200 0 0 chr4 17774911 17774951 -184553396 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 574 293 81 22 chr4 17775126 17775348 -184552999 + MIR SINE MIR 10 244 -18 2379 88 13 0 chr4 17775362 17775668 -184552679 + AluSg SINE Alu 1 310 0 1073 142 0 0 chr4 17775669 17775850 -184552497 + AluSg/x SINE Alu 127 307 0 2248 100 0 3 chr4 17776030 17776320 -184552027 + AluSg SINE Alu 7 295 -15 661 299 47 8 chr4 17776413 17776647 -184551700 - MIR SINE MIR -12 250 8 357 226 26 35 chr4 17777395 17777510 -184550837 + Charlie8 DNA MER1_type 76 189 -2228 2316 97 13 3 chr4 17777756 17778064 -184550283 - AluSq SINE Alu -2 311 1 569 276 68 22 chr4 17778183 17778396 -184549951 + MIR SINE MIR 42 260 -2 355 230 0 14 chr4 17778530 17778604 -184549743 - L2 LINE L2 -1 3312 3240 800 244 77 24 chr4 17778661 17778907 -184549440 + MIR SINE MIR 4 262 0 330 362 29 7 chr4 17779102 17779240 -184549107 - L2 LINE L2 -191 3081 2941 2359 106 0 0 chr4 17779814 17780126 -184548221 - AluSx SINE Alu 0 312 1 474 285 121 91 chr4 17780338 17780811 -184547536 + L2 LINE L2 2827 3313 0 304 314 36 20 chr4 17781109 17781276 -184547071 + MIR SINE MIR 20 187 -65 747 295 44 1 chr4 17781293 17781525 -184546822 - MIR SINE MIR -2 260 22 914 299 129 27 chr4 17781637 17782079 -184546268 - MLT1K LTR MaLR -1 587 101 1999 201 57 5 chr4 17782136 17782558 -184545789 + MLT1C LTR MaLR 22 465 -2 267 31 0 0 chr4 17782903 17782935 -184545412 + (TC)n Simple_repeat Simple_repeat 1 32 0 450 309 90 17 chr4 17783728 17784029 -184544318 - L1ME4a LINE L1 -268 5853 5531 2002 100 76 3 chr4 17784380 17784669 -184543678 - AluSx SINE Alu -2 310 1 716 142 8 37 chr4 17785019 17785153 -184543194 + MLT2B1 LTR ERVL 2 131 -389 4829 201 26 21 chr4 17785161 17785644 -184542703 + ERVL-B1 LTR ERVL 779 1258 -4506 2359 63 0 7 chr4 17785644 17785973 -184542374 + AluY SINE Alu 1 327 0 4829 201 26 21 chr4 17785973 17786492 -184541855 + ERVL-B1 LTR ERVL 1258 1787 -3977 16814 167 21 6 chr4 17786496 17789305 -184539042 + ERVL-B1 LTR ERVL 2907 5757 -7 1055 176 26 0 chr4 17789305 17789498 -184538849 + MLT2B1 LTR ERVL 1 198 -322 682 128 0 28 chr4 17789512 17789621 -184538726 + L1MD3 LINE L1 7862 7967 -28 445 310 125 27 chr4 17790828 17791162 -184537185 + L2 LINE L2 2726 3084 -229 1457 122 14 0 chr4 17791200 17791413 -184536934 + AluSp SINE Alu 93 308 -5 2300 52 39 30 chr4 17791440 17791745 -184536602 - AluY SINE Alu -3 308 1 470 297 134 10 chr4 17791984 17792274 -184536073 + L1MC/D LINE L1 5285 5610 -2198 239 316 9 18 chr4 17792299 17792413 -184535934 - L1ME4a LINE L1 -690 5431 5319 2318 83 144 35 chr4 17792583 17792980 -184535367 + LTR7 LTR ERV1 1 440 -10 240 196 20 0 chr4 17793088 17793139 -184535208 - L2 LINE L2 -1 3312 3261 2044 97 7 39 chr4 17793201 17793511 -184534836 - AluSg SINE Alu -8 302 3 225 0 0 0 chr4 17793739 17793764 -184534583 + (TG)n Simple_repeat Simple_repeat 2 26 0 228 232 0 0 chr4 17793776 17793832 -184534515 - L1MC4 LINE L1 -1339 6703 6648 396 252 32 96 chr4 17794000 17794250 -184534097 + MIR SINE MIR 9 242 -20 2320 96 7 0 chr4 17794589 17794892 -184533455 - AluY SINE Alu -5 306 2 311 287 75 23 chr4 17795026 17795200 -184533147 + L1MC4a LINE L1 3600 3782 -2364 2520 70 0 10 chr4 17795245 17795558 -184532789 + AluY SINE Alu 1 310 -1 304 281 10 10 chr4 17795602 17795698 -184532649 + L1MC4a LINE L1 3813 3908 -2238 472 268 43 112 chr4 17795706 17795982 -184532365 + L1MC4a LINE L1 5400 5656 -2152 234 91 0 0 chr4 17795997 17796030 -184532317 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 357 82 0 0 chr4 17796072 17796121 -184532226 + (GGGA)n Simple_repeat Simple_repeat 4 52 0 822 279 48 24 chr4 17796133 17796470 -184531877 + L1MC4a LINE L1 5688 6032 -1776 325 328 70 67 chr4 17796495 17796836 -184531511 + L1MC4a LINE L1 6123 6464 -1344 1031 212 66 78 chr4 17796877 17797378 -184530969 + L1MC5 LINE L1 7437 7931 -30 190 283 19 0 chr4 17797623 17797676 -184530671 + MIR SINE MIR 20 73 -189 1769 204 68 52 chr4 17797920 17798435 -184529912 + MER39 LTR ERV1 1 703 -4 473 148 89 10 chr4 17798754 17798855 -184529492 + MER34B LTR ERV1 457 565 0 268 258 152 67 chr4 17799289 17799467 -184528880 - L2 LINE L2 -4 3309 3117 230 308 111 17 chr4 17800389 17800506 -184527841 - MER5B DNA MER1_type 0 178 51 718 154 24 12 chr4 17800629 17800798 -184527549 + CT-rich Low_complexity Low_complexity 4 174 0 463 137 0 0 chr4 17800798 17800871 -184527476 - MER41B LTR ERV1 -83 552 480 341 264 189 67 chr4 17801802 17801882 -184526465 + L1MC5 LINE L1 7258 7327 -634 1709 90 5 0 chr4 17801882 17802104 -184526243 + L1PA13 LINE L1 5935 6157 -6 341 264 189 67 chr4 17802104 17802425 -184525922 + L1MC5 LINE L1 7327 7708 -253 773 236 14 0 chr4 17802480 17802628 -184525719 + FRAM SINE Alu 1 150 -26 391 137 11 126 chr4 17802722 17802817 -184525530 + MER21B LTR ERV1 13 96 -767 911 229 21 30 chr4 17802859 17803095 -184525252 + MER21B LTR ERV1 102 335 -528 1005 240 66 60 chr4 17803124 17803490 -184524857 + MER21B LTR ERV1 408 775 -88 303 208 83 31 chr4 17803516 17803612 -184524735 + L1MC5 LINE L1 7832 7932 -29 612 247 7 7 chr4 17803665 17803815 -184524532 - L1ME LINE L1 -687 5475 5326 * 2153 224 21 25 chr4 17803798 17804324 -184524023 + L1ME2 LINE L1 5634 6157 -7 247 261 148 35 chr4 17804956 17805071 -184523276 - MIR SINE MIR -75 187 60 655 244 96 48 chr4 17805193 17805464 -184522883 + LTR16C LTR ERVL 176 459 -32 281 243 14 14 chr4 17805554 17805628 -184522719 + MER116 DNA Mariner 3 76 -4 369 321 57 25 chr4 17806104 17806263 -184522084 + L2 LINE L2 3108 3271 -1 567 273 19 7 chr4 17806467 17806621 -184521726 + MIR SINE MIR 29 184 -78 196 333 42 52 chr4 17806780 17806876 -184521471 - L2 LINE L2 -40 3232 3138 2406 91 0 0 chr4 17806934 17807243 -184521104 + AluY SINE Alu 1 309 -2 196 350 31 10 chr4 17807324 17807421 -184520926 - L2 LINE L2 -582 2732 2634 1276 193 159 52 chr4 17807482 17807902 -184520445 - MLT1C LTR MaLR 0 467 3 2276 101 7 7 chr4 17808358 17808666 -184519681 + AluSc SINE Alu 1 308 -1 1436 111 106 0 chr4 17808708 17808916 -184519431 - MER30 DNA MER1_type 0 230 1 276 231 38 42 chr4 17808981 17809112 -184519235 - MIR SINE MIR -58 204 24 477 253 13 53 chr4 17809715 17809865 -184518482 + MER103 DNA DNA 22 165 -1 241 288 34 0 chr4 17810086 17810145 -184518202 - L2 LINE L2 -4 3309 3249 203 313 53 61 chr4 17810308 17810439 -184517908 - MIR3 SINE MIR -31 177 48 704 168 0 9 chr4 17810457 17810570 -184517777 + FLAM_A SINE Alu 8 119 -23 1973 144 0 0 chr4 17810590 17810903 -184517444 - AluSx SINE Alu 0 313 1 270 381 24 0 chr4 17811104 17811230 -184517117 + MIR SINE MIR 34 162 -100 1729 130 10 31 chr4 17811549 17811842 -184516505 + AluJb SINE Alu 23 309 -3 295 208 83 0 chr4 17813183 17813255 -184515092 + L1ME4a LINE L1 5715 5792 -329 365 286 71 52 chr4 17813690 17813998 -184514349 + L1ME4a LINE L1 5789 6102 -19 253 330 55 0 chr4 17814514 17814605 -184513742 - MIR3 SINE MIR -46 162 67 225 322 25 58 chr4 17814626 17814747 -184513600 - L2 LINE L2 -5 3267 3151 196 256 0 0 chr4 17814914 17814957 -184513390 + L2 LINE L2 3267 3309 -4 27 62 0 0 chr4 17814963 17815011 -184513336 + AT_rich Low_complexity Low_complexity 1 48 0 27 87 0 0 chr4 17815053 17815122 -184513225 + AT_rich Low_complexity Low_complexity 1 69 0 523 315 79 47 chr4 17815265 17815519 -184512828 - MIR SINE MIR 0 262 1 404 134 104 0 chr4 17816393 17816460 -184511887 - MLT1C LTR MaLR 0 467 394 43834 30 21 1 chr4 17816607 17822633 -184505714 + L1HS LINE L1 3 6152 -3 2548 153 22 0 chr4 17822633 17823039 -184505308 - MLT1C LTR MaLR -52 415 1 2433 83 0 0 chr4 17823070 17823371 -184504976 - AluY SINE Alu -9 302 2 495 171 0 0 chr4 17823399 17823469 -184504878 + AluS SINE Alu 2 71 -239 1837 119 0 0 chr4 17823469 17823739 -184504608 + AluSx SINE Alu 42 311 0 2195 90 14 0 chr4 17823758 17824047 -184504300 - L1PA10 LINE L1 -248 5920 5628 2605 153 10 56 chr4 17824517 17825020 -184503327 + MLT1D LTR MaLR 26 505 0 187 138 0 22 chr4 17825900 17825936 -184502411 - L2 LINE L2 -13 3300 3225 204 40 0 0 chr4 17827021 17827046 -184501301 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr4 17827361 17827382 -184500965 + AT_rich Low_complexity Low_complexity 1 21 0 2190 157 58 62 chr4 17827949 17828383 -184499964 - MSTB1 LTR MaLR 0 432 1 1251 154 12 77 chr4 17828390 17828649 -184499698 - MSTB-int LTR MaLR -7 1644 1403 * 3213 219 17 3 chr4 17828646 17829307 -184499040 - MSTB-int LTR MaLR -981 670 1 523 172 21 0 chr4 17829311 17829404 -184498943 - MSTB1 LTR MaLR -335 97 3 2487 188 29 0 chr4 17829560 17829974 -184498373 - MSTB LTR MaLR 0 426 1 226 288 0 0 chr4 17830090 17830149 -184498198 + MIR SINE MIR 20 78 -130 488 284 22 0 chr4 17830183 17830317 -184498030 - MIR SINE MIR -35 227 91 214 282 70 14 chr4 17830387 17830458 -184497889 + MIR3 SINE MIR 120 194 -14 370 209 9 9 chr4 17830848 17830963 -184497384 + (TA)n Simple_repeat Simple_repeat 2 116 0 258 32 0 0 chr4 17831303 17831334 -184497013 + (T)n Simple_repeat Simple_repeat 1 31 0 364 245 49 10 chr4 17831398 17831500 -184496847 + MER46C DNA MER2_type 1 106 -232 269 333 31 0 chr4 17831570 17831666 -184496681 + MER46C DNA MER2_type 240 338 0 21 36 0 0 chr4 17831858 17831886 -184496461 + AT_rich Low_complexity Low_complexity 1 28 0 417 324 72 5 chr4 17832872 17833094 -184495253 + MIR SINE MIR 13 249 -13 304 173 0 0 chr4 17833470 17833522 -184494825 - L2 LINE L2 0 3313 3262 332 43 0 21 chr4 17833546 17833593 -184494754 + (CA)n Simple_repeat Simple_repeat 1 46 0 186 229 0 42 chr4 17833835 17833883 -184494464 + L2 LINE L2 3226 3271 -42 10997 128 12 3 chr4 17833892 17835496 -184492851 + Tigger1 DNA MER2_type 1 1619 -799 1911 142 153 26 chr4 17835496 17835701 -184492646 - MSTA LTR MaLR 0 428 250 3464 151 21 96 chr4 17835701 17835962 -184492385 - LTR8 LTR ERV1 0 691 412 2269 121 0 3 chr4 17835962 17836267 -184492080 - AluSx SINE Alu -8 304 1 3464 151 21 96 chr4 17836267 17836752 -184491595 - LTR8 LTR ERV1 -279 412 1 1911 142 153 26 chr4 17836752 17836926 -184491421 - MSTA LTR MaLR -178 250 1 * 4849 134 45 5 chr4 17836926 17837694 -184490653 + Tigger1 DNA MER2_type 1618 2416 -2 1777 155 22 40 chr4 17837704 17838026 -184490321 + MLT1B LTR MaLR 1 316 -74 189 318 23 34 chr4 17838491 17838579 -184489768 - L2 LINE L2 -185 3087 3001 189 313 76 30 chr4 17838953 17839084 -184489263 + L2 LINE L2 2146 2282 -1032 905 245 5 0 chr4 17839275 17839467 -184488880 + MER58A DNA MER1_type 1 193 -31 376 191 11 53 chr4 17839644 17839738 -184488609 - L2 LINE L2 -2 3311 3222 361 282 208 4 chr4 17839746 17839987 -184488360 + L2 LINE L2 2907 3196 -117 217 289 127 84 chr4 17840217 17840383 -184487964 + MIR3 SINE MIR 13 185 -23 442 270 101 28 chr4 17840498 17840676 -184487671 + MIR SINE MIR 66 256 -6 2464 70 0 3 chr4 17840718 17841019 -184487328 + AluY SINE Alu 1 300 -11 369 263 105 7 chr4 17841912 17842064 -184486283 - MIR3 SINE MIR -22 186 20 303 232 0 37 chr4 17842461 17842543 -184485804 + MER96 DNA MER1_type? 91 169 -6 221 336 56 16 chr4 17842573 17842698 -184485649 + L2 LINE L2 2684 2813 -501 221 231 115 0 chr4 17842821 17842873 -184485474 + MIR SINE MIR 97 154 -108 243 293 60 43 chr4 17843219 17843335 -184485012 + L2 LINE L2 3154 3271 -1 193 317 77 29 chr4 17843443 17843547 -184484800 + MIR SINE MIR 26 134 -128 1407 215 76 69 chr4 17843578 17844039 -184484308 + L1ME2 LINE L1 5659 6122 -42 421 193 105 0 chr4 17844052 17844166 -184484181 - L1MA4 LINE L1 0 6300 6175 2519 88 0 0 chr4 17844174 17844482 -184483865 + AluSx SINE Alu 1 308 -4 1900 150 33 0 chr4 17844486 17844786 -184483561 - MER21A LTR ERV1 -1 930 621 21 0 0 0 chr4 17844845 17844866 -184483481 + AT_rich Low_complexity Low_complexity 1 21 0 211 286 0 36 chr4 17846346 17846402 -184481945 - L2 LINE L2 -6 3266 3213 277 297 69 63 chr4 17847879 17848054 -184480293 + MIR SINE MIR 47 222 -40 198 305 63 68 chr4 17848176 17848345 -184480002 + L2 LINE L2 3125 3294 -19 3458 43 2 80 chr4 17848345 17848831 -184479516 + LTR7 LTR ERV1 1 448 -2 198 305 63 68 chr4 17848831 17848851 -184479496 + L2 LINE L2 3294 3313 0 426 214 95 8 chr4 17849520 17849646 -184478701 - L1ME2 LINE L1 -21 6143 6007 279 308 77 21 chr4 17849828 17849971 -184478376 - L2 LINE L2 0 3313 3163 1608 124 0 4 chr4 17850240 17850465 -184477882 + AluSc SINE Alu 1 224 -85 8200 228 60 35 chr4 17850545 17851405 -184476942 + L1MD1 LINE L1 2512 3349 -2893 1248 216 122 61 chr4 17851405 17851831 -184476516 + MSTB2 LTR MaLR 4 455 -2 8200 228 60 35 chr4 17851831 17852263 -184476084 + L1MD1 LINE L1 3349 3769 -2473 2327 85 0 13 chr4 17852263 17852569 -184475778 + AluY SINE Alu 1 302 -9 8200 228 60 35 chr4 17852569 17853367 -184474980 + L1MD1 LINE L1 3769 4546 -1696 2144 64 10 54 chr4 17853367 17853683 -184474664 + AluY SINE Alu 1 303 0 8200 228 60 35 chr4 17853683 17854928 -184473419 + L1MD1 LINE L1 4546 5920 -322 918 198 0 6 chr4 17855940 17856107 -184472240 - FRAM SINE Alu -12 164 1 258 293 73 0 chr4 17856425 17856507 -184471840 - MIR SINE MIR -112 150 63 229 204 0 0 chr4 17856767 17856811 -184471536 - L2 LINE L2 -8 3305 3262 381 293 89 71 chr4 17857415 17857912 -184470435 + L2 LINE L2 2548 3058 -255 184 413 22 11 chr4 17858070 17858162 -184470185 + L2 LINE L2 3142 3234 -38 2344 196 69 42 chr4 17858328 17858834 -184469513 + MLT2B1 LTR ERVL 1 520 0 415 288 131 6 chr4 17859312 17859472 -184468875 + MER91A DNA MER1_type 4 183 -13 2033 58 0 16 chr4 17859713 17859971 -184468376 + AluY SINE Alu 57 310 -1 228 211 211 0 chr4 17860473 17860549 -184467798 + MIR SINE MIR 77 168 -94 482 291 0 0 chr4 17860630 17860757 -184467590 - MIR SINE MIR -56 206 80 2325 110 0 0 chr4 17860757 17861056 -184467291 - AluSg SINE Alu -11 299 1 2661 198 20 46 chr4 17861317 17861509 -184466838 - L1MC3 LINE L1 0 7785 7589 1234 197 53 4 chr4 17861509 17861737 -184466610 - MER8 DNA MER2_type 0 239 1 2661 198 20 46 chr4 17861737 17862149 -184466198 - L1MC3 LINE L1 -196 7589 7197 281 161 125 40 chr4 17862158 17862255 -184466092 - MLT1F1 LTR MaLR -383 166 35 788 183 37 12 chr4 17862255 17862419 -184465928 - L1MC3 LINE L1 -700 7085 6918 439 199 21 9 chr4 17862417 17862503 -184465844 - L1MC3 LINE L1 -1082 6703 6631 * 1605 164 29 4 chr4 17862503 17862798 -184465549 - AluJb SINE Alu 0 302 1 439 199 21 9 chr4 17862798 17862812 -184465535 - L1MC3 LINE L1 -1154 6631 6619 255 320 53 53 chr4 17863187 17863337 -184465010 + L2 LINE L2 2629 2778 -536 387 244 134 8 chr4 17863338 17863457 -184464890 - MER96 DNA MER1_type? 0 175 42 289 265 165 45 chr4 17863457 17863718 -184464629 + L2 LINE L2 2776 3063 -209 233 292 15 0 chr4 17863931 17863996 -184464351 - L2 LINE L2 -203 3069 3004 236 219 110 27 chr4 17864032 17864105 -184464242 - MER116 DNA Mariner -1 79 1 620 250 41 51 chr4 17864132 17864328 -184464019 - MIR SINE MIR -44 218 25 227 192 53 72 chr4 17864916 17865009 -184463338 + MIR SINE MIR 117 201 -7 285 192 0 0 chr4 17865856 17865908 -184462439 - MIR SINE MIR -161 101 50 340 211 105 0 chr4 17866440 17866516 -184461831 + MIR SINE MIR 154 237 -25 2243 106 0 0 chr4 17867232 17867534 -184460813 - AluSg SINE Alu -8 302 1 210 37 0 0 chr4 17867534 17867561 -184460786 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2265 82 0 20 chr4 17869283 17869588 -184458759 - AluSx SINE Alu -13 299 1 994 167 5 21 chr4 17870192 17870384 -184457963 - MER53 DNA DNA 0 189 1 928 221 142 12 chr4 17870643 17870974 -184457373 + LTR37A LTR ERV1 53 426 0 2500 55 0 3 chr4 17871100 17871410 -184456937 - AluY SINE Alu -2 309 1 299 288 27 55 chr4 17871712 17871858 -184456489 + L2 LINE L2 3172 3313 0 182 263 0 0 chr4 17872145 17872183 -184456164 - L2 LINE L2 -31 3241 3204 203 152 0 0 chr4 17872185 17872218 -184456129 + GA-rich Low_complexity Low_complexity 2 34 0 314 135 19 0 chr4 17872398 17872450 -184455897 - Charlie1b DNA MER1_type -2 521 469 2846 227 61 79 chr4 17872450 17872879 -184455468 + L1MD2 LINE L1 5051 5486 -2556 1644 186 3 17 chr4 17872879 17873170 -184455177 + AluJb SINE Alu 1 287 -25 2454 58 0 0 chr4 17873174 17873466 -184454881 + AluY SINE Alu 1 292 -19 2786 10 0 13 chr4 17873468 17873836 -184454511 + AluYb8 SINE Alu 1 318 0 2846 227 61 79 chr4 17873836 17874511 -184453836 + L1MD2 LINE L1 5490 6176 -1866 261 0 0 0 chr4 17874511 17874540 -184453807 + (CA)n Simple_repeat Simple_repeat 1 29 0 2846 227 61 79 chr4 17874540 17874718 -184453629 + L1MD2 LINE L1 6176 8021 -21 2225 203 23 11 chr4 17874723 17875197 -184453150 - Charlie1b DNA MER1_type -43 480 1 329 278 56 28 chr4 17875242 17875350 -184452997 + L2 LINE L2 3139 3249 -23 597 256 138 50 chr4 17876377 17876697 -184451650 + MER7A DNA MER2_type 1 346 0 226 0 59 0 chr4 17878118 17878152 -184450195 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 2184 65 7 11 chr4 17878152 17878431 -184449916 - AluY SINE Alu -33 278 1 200 264 42 28 chr4 17879153 17879225 -184449122 + MER5A DNA MER1_type 82 154 -35 2276 137 31 11 chr4 17879398 17879755 -184448592 + THE1B LTR MaLR 1 364 0 232 302 70 0 chr4 17880044 17880130 -184448217 + MIR SINE MIR 53 144 -118 207 0 0 0 chr4 17880387 17880410 -184447937 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 1286 219 120 23 chr4 17881125 17881509 -184446838 - MLT1C LTR MaLR -41 426 6 811 277 74 53 chr4 17882388 17882821 -184445526 + L2 LINE L2 2871 3312 -1 534 250 109 38 chr4 17883587 17883907 -184444440 + L1ME4a LINE L1 5725 6067 -54 662 336 82 11 chr4 17884036 17884560 -184443787 - L1ME4a LINE L1 -114 6007 5447 498 214 11 0 chr4 17885051 17885140 -184443207 + MER21B LTR ERV1 1 90 -773 478 156 131 31 chr4 17885147 17885327 -184443020 + L1PA16 LINE L1 5949 6166 0 4029 184 48 19 chr4 17885337 17886092 -184442255 + MER21B LTR ERV1 87 863 0 2261 107 0 3 chr4 17886140 17886438 -184441909 + AluSx SINE Alu 1 297 -15 227 185 93 0 chr4 17886618 17886672 -184441675 + MIR SINE MIR 86 144 -118 2439 97 0 0 chr4 17886913 17887222 -184441125 + AluSx SINE Alu 1 309 -3 331 294 153 44 chr4 17887433 17887773 -184440574 - L1MCc LINE L1 -6028 395 19 332 273 109 16 chr4 17887793 17887921 -184440426 - MIR SINE MIR -74 188 49 2170 106 7 0 chr4 17887951 17888256 -184440091 - AluSx SINE Alu 0 307 1 3015 90 44 23 chr4 17889370 17889416 -184438931 - MLT2A1 LTR ERVL 0 444 400 524 91 11 0 chr4 17889416 17889504 -184438843 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 3015 90 44 23 chr4 17889504 17889892 -184438455 - MLT2A1 LTR ERVL -44 400 1 264 326 23 23 chr4 17889987 17890116 -184438231 - L3 LINE CR1 -13 1564 1436 411 183 0 0 chr4 17890301 17890372 -184437975 + MER5A DNA MER1_type 31 101 -88 194 282 59 12 chr4 17890438 17890523 -184437824 + MIR3 SINE MIR 99 187 -21 1810 143 58 3 chr4 17890697 17890991 -184437356 + AluJo SINE Alu 1 310 -2 247 270 28 7 chr4 17891468 17891550 -184436797 + GA-rich Low_complexity Low_complexity 3 144 0 3252 239 64 24 chr4 17891907 17892962 -184435385 + L1ME1 LINE L1 2449 3553 -2593 2264 101 3 0 chr4 17892962 17893258 -184435089 - AluSp SINE Alu -16 297 1 3252 239 64 24 chr4 17893258 17893320 -184435027 + L1ME1 LINE L1 3553 3611 -2535 556 213 137 11 chr4 17893315 17893498 -184434849 + L1ME1 LINE L1 4213 4418 -1728 * 792 206 33 5 chr4 17893503 17893687 -184434660 + MER96B DNA MER1_type? 6 194 -223 3214 231 57 19 chr4 17893739 17894902 -184433445 + L1ME1 LINE L1 4439 5645 -521 322 204 130 74 chr4 17894930 17895038 -184433309 - MER58B DNA MER1_type -36 305 192 1549 240 44 38 chr4 17895079 17895575 -184432772 + L1ME1 LINE L1 5663 6161 -5 327 308 129 8 chr4 17895806 17895977 -184432370 + MIR SINE MIR 3 192 -56 2165 195 38 5 chr4 17896045 17896445 -184431902 - MLT2D LTR ERVL 0 414 2 36 0 0 0 chr4 17896546 17896582 -184431765 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 17897045 17897067 -184431280 + AT_rich Low_complexity Low_complexity 1 22 0 2602 49 0 0 chr4 17897863 17898169 -184430178 - AluY SINE Alu -5 306 1 217 108 27 0 chr4 17898500 17898537 -184429810 + MIR SINE MIR 108 145 -117 709 239 28 17 chr4 17898560 17898736 -184429611 + MER63A DNA MER1_type 28 205 -5 24 32 0 0 chr4 17899411 17899442 -184428905 + AT_rich Low_complexity Low_complexity 1 31 0 1823 123 0 4 chr4 17899668 17899929 -184428418 + AluSq SINE Alu 1 260 -53 180 26 53 26 chr4 17899929 17899967 -184428380 + (CAA)n Simple_repeat Simple_repeat 1 39 0 2040 152 83 11 chr4 17900177 17900551 -184427796 - L1MA9 LINE L1 -5 6307 5907 2386 93 3 0 chr4 17900995 17901296 -184427051 + AluSc SINE Alu 1 302 -7 321 326 60 30 chr4 17901392 17901625 -184426722 - MLT1K LTR MaLR -32 556 317 246 333 39 45 chr4 17901741 17901897 -184426450 - MLT1K LTR MaLR -342 246 92 470 244 43 49 chr4 17902030 17902194 -184426153 - L1MC/D LINE L1 -2018 5790 5628 318 286 27 45 chr4 17902552 17902664 -184425683 - LTR67 LTR ERVL -363 194 85 327 49 0 0 chr4 17902770 17902811 -184425536 + (CA)n Simple_repeat Simple_repeat 2 42 0 2127 106 3 11 chr4 17903637 17903953 -184424394 - AluSg SINE Alu 0 314 1 607 288 80 9 chr4 17904310 17904522 -184423825 + MIR SINE MIR 2 228 -34 3164 146 52 2 chr4 17905081 17905615 -184422732 - MER34B LTR ERV1 0 565 5 3630 53 0 11 chr4 17905763 17906216 -184422131 - LTR7 LTR ERV1 -2 448 1 2493 84 45 13 chr4 17906216 17906596 -184421751 - HERVH LTR ERV1 0 7713 7322 1429 130 19 0 chr4 17906594 17906810 -184421537 - HERVH LTR ERV1 -1894 5819 5600 * 11426 88 27 40 chr4 17906811 17908490 -184419857 - HERVH LTR ERV1 -2564 5149 3492 960 133 7 0 chr4 17908480 17908630 -184419717 - HERVH LTR ERV1 -4423 3290 3140 * 16701 102 16 19 chr4 17908609 17911491 -184416856 - HERVH LTR ERV1 -4718 2995 1 3637 51 4 13 chr4 17911493 17911945 -184416402 - LTR7 LTR ERV1 -2 448 1 3658 90 59 0 chr4 17911945 17912456 -184415891 - MER41A LTR ERV1 -13 541 1 2073 108 42 0 chr4 17912752 17913038 -184415309 - AluSg SINE Alu -11 299 2 24 32 0 0 chr4 17913047 17913078 -184415269 + AT_rich Low_complexity Low_complexity 1 31 0 324 120 0 0 chr4 17913109 17913159 -184415188 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 492 244 65 36 chr4 17913224 17913392 -184414955 - MIR SINE MIR -57 205 33 239 260 39 0 chr4 17915745 17915822 -184412525 - MIR SINE MIR 0 262 183 881 246 26 0 chr4 17916209 17916441 -184411906 + L1MD3 LINE L1 7748 7985 -10 326 276 94 8 chr4 17916686 17916813 -184411534 - MIR SINE MIR -70 192 55 186 235 0 0 chr4 17916957 17916991 -184411356 + L2 LINE L2 3208 3241 -31 233 233 0 0 chr4 17917542 17917585 -184410762 + MER39 LTR ERV1 4 46 -661 2743 116 8 3 chr4 17917615 17917977 -184410370 - THE1B LTR MaLR 0 364 1 992 234 33 71 chr4 17917978 17918345 -184410002 + MER39 LTR ERV1 257 609 -98 696 157 0 0 chr4 17918474 17918606 -184409741 - AluSg/x SINE Alu 0 312 181 372 322 26 9 chr4 17918645 17918760 -184409587 + MIR SINE MIR 19 135 -127 1622 217 41 49 chr4 17919043 17919567 -184408780 - MER39 LTR ERV1 0 707 4 501 240 184 28 chr4 17920638 17920888 -184407459 - MLT1H LTR MaLR -206 343 55 322 322 31 78 chr4 17920967 17921222 -184407125 + L2 LINE L2 2316 2558 -756 650 271 128 12 chr4 17921261 17921582 -184406765 + L2 LINE L2 2950 3307 -6 256 270 95 14 chr4 17921660 17921734 -184406613 - L2 LINE L2 -196 3076 2997 843 256 129 67 chr4 17921810 17922376 -184405971 + Charlie7 DNA MER1_type 78 678 -1934 318 210 0 0 chr4 17922453 17922515 -184405832 - L1ME3 LINE L1 -1 6230 6169 1895 211 111 33 chr4 17922516 17922596 -184405751 - L1ME3 LINE L1 -181 6050 5978 306 0 0 0 chr4 17922596 17922630 -184405717 + (TG)n Simple_repeat Simple_repeat 2 35 0 1895 211 111 33 chr4 17922630 17923249 -184405098 - L1ME3 LINE L1 -253 5978 5293 1709 180 52 0 chr4 17923253 17923558 -184404789 - MER2 DNA MER2_type -24 321 1 244 196 0 0 chr4 17923558 17923603 -184404744 + LTR66 LTR ERVL 395 439 -171 309 276 23 0 chr4 17923616 17923703 -184404644 + L1MC4 LINE L1 6615 6703 -1339 232 175 0 53 chr4 17923733 17923790 -184404557 - LTR66 LTR ERVL -171 439 386 5683 245 75 47 chr4 17923795 17924161 -184404186 - L1ME3 LINE L1 -933 5282 4928 1417 181 35 48 chr4 17924161 17924475 -184403872 + AluJb SINE Alu 3 312 0 5683 245 75 47 chr4 17924475 17926518 -184401829 - L1ME3 LINE L1 -1287 4928 2805 1985 109 0 8 chr4 17926551 17926816 -184401531 - AluSx SINE Alu -11 301 39 366 178 27 0 chr4 17926863 17926936 -184401411 - MLT1E LTR MaLR 0 593 519 1068 222 72 55 chr4 17926956 17927249 -184401098 - MLT1E1 LTR MaLR -52 602 305 263 27 0 27 chr4 17927261 17927298 -184401049 + (GA)n Simple_repeat Simple_repeat 1 36 0 202 328 0 0 chr4 17927308 17927369 -184400978 + (TA)n Simple_repeat Simple_repeat 1 61 0 524 241 9 0 chr4 17927369 17927477 -184400870 - MLT1E1 LTR MaLR -432 161 53 252 305 12 0 chr4 17927579 17927661 -184400686 - MLT1E1 LTR MaLR -571 83 1 570 224 82 66 chr4 17927683 17927987 -184400360 - L1ME3 LINE L1 -4753 1643 1335 4236 204 70 6 chr4 17927995 17929508 -184398839 - L1MD1 LINE L1 0 6242 4639 2324 61 11 0 chr4 17929560 17929860 -184398487 - AluY SINE Alu 0 303 1 1644 186 3 17 chr4 17929864 17930155 -184398192 - AluJb SINE Alu -25 287 1 998 205 82 34 chr4 17930156 17930584 -184397763 - L1MC/D LINE L1 -740 5502 5051 314 135 19 0 chr4 17930584 17930636 -184397711 + Charlie1 DNA MER1_type 2707 2759 -2 183 129 0 0 chr4 17930818 17930849 -184397498 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 182 263 0 0 chr4 17930851 17930889 -184397458 + L2 LINE L2 3204 3241 -31 555 265 135 39 chr4 17931333 17931682 -184396665 + MLT1J2 LTR MaLR 6 450 0 254 304 126 39 chr4 17932284 17932593 -184395754 + L2 LINE L2 2821 3156 -157 2298 94 0 3 chr4 17932595 17932892 -184395455 + AluSx SINE Alu 10 305 -7 290 339 101 0 chr4 17933043 17933152 -184395195 - L2 LINE L2 -16 3256 3137 230 348 59 8 chr4 17933399 17933517 -184394830 - L2 LINE L2 -236 3036 2913 28 48 0 0 chr4 17934458 17934500 -184393847 + AT_rich Low_complexity Low_complexity 1 42 0 292 250 139 0 chr4 17935200 17935308 -184393039 - LTR33 LTR ERVL -67 454 332 294 235 30 83 chr4 17935398 17935425 -184392922 - LTR33 LTR ERVL -335 188 161 1774 157 88 26 chr4 17935425 17935776 -184392571 - THE1C LTR MaLR -2 373 1 294 235 30 83 chr4 17935776 17935880 -184392467 - LTR33 LTR ERVL -362 161 64 2498 77 0 3 chr4 17936529 17936841 -184391506 - AluY SINE Alu 0 311 1 985 157 92 5 chr4 17936851 17937036 -184391311 - L1PB1 LINE L1 0 6151 5951 522 171 23 31 chr4 17938418 17938547 -184389800 - L1MC5 LINE L1 -30 7931 7804 1668 192 24 17 chr4 17938724 17939011 -184389336 + AluJb SINE Alu 1 289 -23 605 279 73 5 chr4 17939781 17939985 -184388362 - L2 LINE L2 -1 3312 3095 3492 191 33 2 chr4 17940126 17940759 -184387588 - MER82 DNA MER2_type 0 653 1 255 31 0 0 chr4 17940817 17940849 -184387498 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 2058 127 13 3 chr4 17940887 17941186 -184387161 - AluSc SINE Alu -7 302 1 561 298 69 0 chr4 17941191 17941379 -184386968 + MIR SINE MIR 48 248 -14 317 193 23 11 chr4 17941602 17941690 -184386657 + Charlie4a DNA MER1_type 70 158 -350 13676 117 40 88 chr4 17941747 17941937 -184386410 - Tigger1 DNA MER2_type -1 2417 2220 1760 194 0 0 chr4 17941937 17942231 -184386116 + AluJo SINE Alu 1 294 -18 13676 117 40 88 chr4 17942231 17942976 -184385371 - Tigger1 DNA MER2_type -198 2220 1441 2098 108 11 0 chr4 17942976 17943253 -184385094 - AluSp SINE Alu -33 280 1 13676 117 40 88 chr4 17943253 17944732 -184383615 - Tigger1 DNA MER2_type -977 1441 125 2186 132 3 0 chr4 17944732 17945042 -184383305 - AluSx SINE Alu 0 312 2 13676 117 40 88 chr4 17945042 17945162 -184383185 - Tigger1 DNA MER2_type -2293 125 1 645 223 133 9 chr4 17945165 17945376 -184382971 + Charlie4a DNA MER1_type 268 504 -4 272 287 90 30 chr4 17945999 17946166 -184382181 - L2 LINE L2 -254 3018 2842 324 315 69 65 chr4 17946284 17946764 -184381583 - L2 LINE L2 -578 2736 2255 297 135 0 0 chr4 17946819 17946871 -184381476 + (ATG)n Simple_repeat Simple_repeat 3 54 0 348 264 259 0 chr4 17946873 17947047 -184381300 - MIR SINE MIR -10 252 34 276 259 0 0 chr4 17947043 17947101 -184381246 + MIR SINE MIR 132 189 -73 * 708 239 144 18 chr4 17947109 17947331 -184381016 - MIR SINE MIR -1 261 12 221 167 24 0 chr4 17947518 17947560 -184380787 + L2 LINE L2 3271 3313 0 212 275 25 38 chr4 17947608 17947688 -184380659 + MIR SINE MIR 62 140 -68 262 258 10 52 chr4 17947712 17947809 -184380538 - MER117 DNA MER1_type -7 190 98 189 291 0 0 chr4 17947881 17947936 -184380411 + MIR3 SINE MIR 151 205 -3 355 279 27 36 chr4 17948753 17948864 -184379483 + MIR SINE MIR 37 146 -62 744 210 135 89 chr4 17949179 17949419 -184378928 - MLT1E LTR MaLR -305 288 1 265 393 53 0 chr4 17949706 17949856 -184378491 - MIR SINE MIR -70 192 35 332 288 118 20 chr4 17950469 17950622 -184377725 + MIR SINE MIR 94 261 -1 1063 166 102 39 chr4 17950884 17951089 -184377258 + MER20 DNA MER1_type 1 218 -1 355 247 93 10 chr4 17951101 17951198 -184377149 + MIR SINE MIR 42 146 -62 184 349 0 30 chr4 17951487 17951553 -184376794 + MIR3 SINE MIR 142 205 -3 285 266 173 22 chr4 17951808 17951947 -184376400 - MLT2E LTR ERVL -433 195 36 247 228 165 38 chr4 17953318 17953397 -184374950 - L2 LINE L2 0 3313 3225 247 297 14 14 chr4 17953872 17953946 -184374401 + MIR SINE MIR 48 121 -87 2382 136 19 21 chr4 17953975 17954351 -184373996 - THE1C LTR MaLR 0 375 1 195 321 146 0 chr4 17954659 17954796 -184373551 + MIR SINE MIR 93 249 -13 625 149 0 0 chr4 17954837 17954944 -184373403 + L1MA3 LINE L1 6198 6304 -1 476 205 0 0 chr4 17955875 17955958 -184372389 - MER81 DNA DNA 0 114 32 6637 91 6 24 chr4 17955983 17957183 -184371164 + L1PB1 LINE L1 4970 6151 0 379 203 0 0 chr4 17957208 17957272 -184371075 - MER81 DNA DNA -49 65 2 559 222 58 34 chr4 17957857 17958030 -184370317 - MER77 LTR ERV1 -4 601 408 692 265 66 70 chr4 17958060 17958362 -184369985 - MER77 LTR ERV1 -263 342 42 189 0 0 0 chr4 17958444 17958465 -184369882 + (TTA)n Simple_repeat Simple_repeat 2 22 0 319 243 168 19 chr4 17958477 17958584 -184369763 - MIR SINE MIR -131 131 9 1187 297 94 35 chr4 17958655 17959146 -184369201 - LTR33 LTR ERVL 0 521 2 205 343 61 10 chr4 17959588 17959687 -184368660 - L2 LINE L2 -610 2704 2601 240 283 0 0 chr4 17960248 17960301 -184368046 - L2 LINE L2 0 3272 3220 328 316 89 54 chr4 17960435 17960603 -184367744 + MER91A DNA MER1_type 1 174 -22 529 287 24 12 chr4 17961444 17961611 -184366736 + MIR SINE MIR 20 188 -74 692 122 0 9 chr4 17963161 17963276 -184365071 + (GGGGA)n Simple_repeat Simple_repeat 4 117 0 1240 228 70 98 chr4 17963502 17963959 -184364388 + MLT1H LTR MaLR 3 446 -103 2098 129 53 5 chr4 17965008 17965352 -184362995 + MLT2C1 LTR ERVL 3 424 -40 225 140 53 0 chr4 17965367 17965424 -184362923 + (TA)n Simple_repeat Simple_repeat 2 61 0 339 113 0 81 chr4 17965463 17965525 -184362822 + MLT2C1 LTR ERVL 464 520 0 599 280 207 4 chr4 17965881 17966113 -184362234 + LTR16A1 LTR ERVL 179 457 0 566 297 126 5 chr4 17966324 17966546 -184361801 - L3 LINE CR1 0 1577 1329 784 250 141 21 chr4 17967352 17967554 -184360793 + L2 LINE L2 2782 2958 -355 2028 138 67 25 chr4 17967554 17967910 -184360437 - THE1C LTR MaLR -4 371 1 784 250 141 21 chr4 17967910 17968147 -184360200 + L2 LINE L2 2958 3279 -34 1181 276 101 51 chr4 17968290 17969678 -184358669 - L1MC4a LINE L1 -747 5399 4577 450 310 89 9 chr4 17969766 17970181 -184358166 - L1MC4a LINE L1 -2167 3979 3526 1000 231 65 8 chr4 17970221 17970468 -184357879 + MER69 DNA AcHobo 7 267 -2259 284 318 138 14 chr4 17970469 17970686 -184357661 + LTR16A LTR ERVL 2 245 -205 271 305 119 0 chr4 17970728 17970846 -184357501 + LTR16A LTR ERVL 319 450 0 1864 244 117 61 chr4 17970846 17971616 -184356731 + MER69 DNA AcHobo 263 1075 -1451 1414 230 80 35 chr4 17971619 17972083 -184356264 + MER69 DNA AcHobo 1937 2432 -94 2291 92 0 23 chr4 17972083 17972387 -184355960 - AluSx SINE Alu -15 297 1 1414 230 80 35 chr4 17972387 17972487 -184355860 + MER69 DNA AcHobo 2432 2526 0 2312 108 10 0 chr4 17972801 17973106 -184355241 - AluSx SINE Alu -4 308 1 2449 228 16 53 chr4 17973106 17973202 -184355145 + L1M4 LINE L1 2234 2332 -3814 1745 168 3 3 chr4 17973202 17973493 -184354854 + AluSx SINE Alu 1 291 -21 2449 228 16 53 chr4 17973493 17974187 -184354160 + L1M4 LINE L1 2332 2995 -3151 887 169 11 22 chr4 17974706 17974884 -184353463 - THE1B LTR MaLR 0 364 189 430 157 20 0 chr4 17974928 17975030 -184353317 + (TA)n Simple_repeat Simple_repeat 2 105 0 6996 116 12 39 chr4 17975030 17976146 -184352201 + Tigger1 DNA MER2_type 393 1478 -940 2191 118 7 0 chr4 17976146 17976443 -184351904 + AluSx SINE Alu 1 299 -13 617 228 113 80 chr4 17976443 17976754 -184351593 - HAL1b LINE L1 -879 469 149 1725 278 100 2 chr4 17976757 17977627 -184350720 + L2 LINE L2 2224 3184 -129 1889 177 74 5 chr4 17977974 17978353 -184349994 + L1MA9 LINE L1 5907 6311 -1 2002 115 0 4 chr4 17978588 17978858 -184349489 - AluSx SINE Alu -43 269 1 227 185 93 0 chr4 17979099 17979153 -184349194 - MIR SINE MIR -118 144 86 384 241 8 55 chr4 17979255 17979618 -184348729 + CT-rich Low_complexity Low_complexity 1 346 0 213 241 0 35 chr4 17979620 17979678 -184348669 + C-rich Low_complexity Low_complexity 1 56 0 432 207 24 30 chr4 17979679 17979843 -184348504 + CT-rich Low_complexity Low_complexity 3 165 0 225 307 111 41 chr4 17980484 17980708 -184347639 - L2 LINE L2 -270 3002 2763 348 340 20 7 chr4 17981632 17981779 -184346568 + MLT1K LTR MaLR 22 170 -418 340 189 22 56 chr4 17982012 17982102 -184346245 + MLT1K LTR MaLR 485 571 -17 427 290 21 11 chr4 17982458 17982703 -184345644 + MER41B LTR ERV1 51 430 -205 183 217 33 50 chr4 17983105 17983165 -184345182 - L2 LINE L2 -568 2746 2688 879 130 18 6 chr4 17983470 17983639 -184344708 + GA-rich Low_complexity Low_complexity 3 173 0 227 314 123 34 chr4 17984781 17984985 -184343362 - L2 LINE L2 -405 2909 2688 207 100 0 0 chr4 17985269 17985299 -184343048 + (TCTCC)n Simple_repeat Simple_repeat 5 34 0 241 65 0 0 chr4 17985489 17985520 -184342827 + MLT1C LTR MaLR 389 419 -48 241 254 116 89 chr4 17985583 17985807 -184342540 - MER102a DNA MER1_type -9 321 92 1839 278 139 34 chr4 17985855 17986891 -184341456 - L2 LINE L2 -36 3277 2132 1415 291 41 24 chr4 17986891 17987399 -184340948 - L2 LINE L2 -2097 1217 701 364 250 34 0 chr4 17987459 17987547 -184340800 - MER5A DNA MER1_type -97 92 2 192 267 0 0 chr4 17987558 17987603 -184340744 - L2 LINE L2 -2612 702 658 434 297 10 74 chr4 17987683 17987885 -184340462 - MER5A DNA MER1_type 0 189 1 471 246 66 0 chr4 17987904 17988026 -184340321 + MIR SINE MIR 77 206 -56 205 256 39 39 chr4 17988162 17988240 -184340107 - MIR SINE MIR -12 250 173 1163 204 126 9 chr4 17988477 17989090 -184339257 + LTR50 LTR ERVL 1 771 -24 294 29 0 0 chr4 17989097 17989132 -184339215 + (TC)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chr4 17989131 17989151 -184339196 + (CA)n Simple_repeat Simple_repeat 1 20 0 * 217 288 41 65 chr4 17989423 17989593 -184338754 + L2 LINE L2 3088 3253 -60 2083 154 55 13 chr4 17989594 17990048 -184338299 + Charlie4a DNA MER1_type 1 473 -35 1133 220 67 9 chr4 17990048 17990393 -184337954 + L1ME1 LINE L1 4955 5319 -827 1255 93 5 93 chr4 17990493 17990698 -184337649 + AluSg/x SINE Alu 105 291 -21 1305 252 27 6 chr4 17990814 17991151 -184337196 + L1ME1 LINE L1 5479 5822 -344 373 0 0 0 chr4 17991152 17991193 -184337154 + L1PA7 LINE L1 6099 6139 -15 21 0 0 0 chr4 17991811 17991832 -184336515 + AT_rich Low_complexity Low_complexity 1 21 0 1226 190 41 66 chr4 17991832 17992196 -184336151 + L1ME1 LINE L1 5810 6164 -2 2199 129 0 53 chr4 17992361 17992483 -184335864 + L1PA13 LINE L1 5750 5877 -286 2481 88 0 0 chr4 17992483 17992788 -184335559 - AluY SINE Alu -6 305 1 2199 129 0 53 chr4 17992788 17993076 -184335271 + L1PA13 LINE L1 5877 6138 -25 243 305 55 37 chr4 17993119 17993283 -184335064 - L2 LINE L2 -145 3168 3002 389 354 23 19 chr4 17993888 17994103 -184334244 + L3b LINE CR1 1236 1451 -132 187 308 0 0 chr4 17994178 17994217 -184334130 + L2 LINE L2 3245 3283 -30 740 234 196 26 chr4 17994413 17994725 -184333622 - MLT1H LTR MaLR -147 402 38 1009 152 217 68 chr4 17994732 17994949 -184333398 - MLT2B2 LTR ERVL -11 504 321 2191 112 3 7 chr4 17994949 17995244 -184333103 + AluSx SINE Alu 5 298 -14 1009 152 217 68 chr4 17995244 17995349 -184332998 - MLT2B2 LTR ERVL -194 321 134 1996 85 0 0 chr4 17995449 17995695 -184332652 + AluSc SINE Alu 40 285 -24 508 242 157 0 chr4 17995946 17996099 -184332248 + L2 LINE L2 3137 3313 0 272 260 26 0 chr4 17996701 17996778 -184331569 + MER5A DNA MER1_type 31 109 -80 226 270 29 88 chr4 17997155 17997292 -184331055 + MLT1H LTR MaLR 420 548 -1 374 321 99 11 chr4 17998030 17998199 -184330148 + MIR3 SINE MIR 3 177 -41 455 194 19 103 chr4 17998241 17998396 -184329951 - MIR SINE MIR -21 241 100 219 226 32 0 chr4 17998537 17998599 -184329748 + A-rich Low_complexity Low_complexity 4 67 0 2020 197 7 17 chr4 17998869 17999280 -184329067 - MLT2D LTR ERVL 0 414 8 232 300 44 33 chr4 17999981 18000071 -184328276 - MIR SINE MIR -143 119 29 243 292 26 56 chr4 18000263 18000458 -184327889 + L1ME1 LINE L1 5630 5818 -303 25 0 0 0 chr4 18000553 18000578 -184327769 + AT_rich Low_complexity Low_complexity 1 25 0 1918 163 3 3 chr4 18000578 18000872 -184327475 - AluSx SINE Alu -18 294 1 1779 198 40 6 chr4 18000938 18001291 -184327056 + MLT1A1 LTR MaLR 1 365 0 398 262 35 7 chr4 18001405 18001550 -184326797 + L1ME1 LINE L1 6013 6161 -5 202 233 23 0 chr4 18001567 18001610 -184326737 - MER5B DNA MER1_type -134 44 1 189 0 0 0 chr4 18001917 18001938 -184326409 + (A)n Simple_repeat Simple_repeat 1 21 0 2454 109 0 0 chr4 18002660 18002972 -184325375 + AluSx SINE Alu 1 312 0 258 220 296 45 chr4 18003032 18003164 -184325183 - MIR SINE MIR -96 166 2 327 324 0 9 chr4 18003737 18003845 -184324502 + MIR SINE MIR 37 143 -65 357 355 59 15 chr4 18004069 18004272 -184324075 - HAL1b LINE L1 -550 798 587 314 322 17 8 chr4 18004893 18005011 -184323336 + L2 LINE L2 2930 3048 -224 2070 125 20 3 chr4 18005158 18005462 -184322885 - AluSx SINE Alu -3 309 1 247 375 88 6 chr4 18006173 18006333 -184322014 + MIR SINE MIR 22 194 -68 2411 81 0 7 chr4 18006763 18007071 -184321276 + AluY SINE Alu 1 306 -5 348 304 9 0 chr4 18007717 18007829 -184320518 + L1ME LINE L1 5164 5276 -870 1002 73 8 0 chr4 18007849 18007973 -184320374 + AluSc SINE Alu 1 125 -184 399 291 44 39 chr4 18007975 18008178 -184320169 + L1ME LINE L1 5271 5474 -688 313 157 3 0 chr4 18008422 18008491 -184319856 + MSTD LTR MaLR 329 422 -6 981 240 128 44 chr4 18008673 18009145 -184319202 + MLT1G1 LTR MaLR 7 553 -2 2147 121 7 0 chr4 18009614 18009912 -184318435 + AluSx SINE Alu 12 311 -1 1682 201 201 25 chr4 18009970 18010526 -184317821 - MLT1E1 LTR MaLR 0 654 1 406 122 0 14 chr4 18010529 18010603 -184317744 - MER53 DNA DNA 0 189 117 567 297 61 40 chr4 18010650 18010977 -184317370 - MER102b DNA MER1_type -3 338 5 2120 119 44 33 chr4 18011936 18012296 -184316051 + THE1B LTR MaLR 1 364 0 258 160 0 0 chr4 18012738 18012788 -184315559 + A-rich Low_complexity Low_complexity 1 50 0 1730 144 4 4 chr4 18013266 18013558 -184314789 + AluSx SINE Alu 18 309 0 9716 214 22 14 chr4 18013560 18017532 -184310815 + L1MC1 LINE L1 2326 7993 -2 449 268 39 24 chr4 18017544 18017671 -184310676 + MER5B DNA MER1_type 50 178 0 1034 186 5 5 chr4 18017679 18017867 -184310480 + MER5A DNA MER1_type 1 188 -1 293 368 35 35 chr4 18018168 18018312 -184310035 + L2 LINE L2 3124 3267 -5 797 239 66 36 chr4 18018427 18018728 -184309619 + MER2 DNA MER2_type 35 344 -1 429 276 141 6 chr4 18018731 18018901 -184309446 - MIR SINE MIR -69 193 1 282 352 37 0 chr4 18018903 18019011 -184309336 + MIR SINE MIR 34 145 -63 303 245 21 43 chr4 18019206 18019300 -184309047 - L1MC4 LINE L1 -1339 6703 6612 30 0 0 0 chr4 18019300 18019330 -184309017 + AT_rich Low_complexity Low_complexity 1 30 0 1950 105 40 11 chr4 18019330 18019606 -184308741 - AluSg SINE Alu -26 284 1 557 257 70 23 chr4 18019615 18019786 -184308561 - MLT1J2 LTR MaLR 0 450 272 327 281 103 38 chr4 18020292 18020358 -184307989 + L1ME4a LINE L1 5836 5896 -225 273 119 0 0 chr4 18020358 18020400 -184307947 + (TG)n Simple_repeat Simple_repeat 2 43 0 327 281 103 38 chr4 18020400 18020518 -184307829 + L1ME4a LINE L1 5896 6032 -89 375 254 134 15 chr4 18020694 18020828 -184307519 + L1MC4a LINE L1 5512 5661 -460 325 316 68 0 chr4 18020874 18020991 -184307356 + L1MC4a LINE L1 5765 5889 -1919 244 237 0 42 chr4 18021245 18021363 -184306984 + (TATATG)n Simple_repeat Simple_repeat 5 117 0 269 250 0 15 chr4 18021844 18021912 -184306435 + CT-rich Low_complexity Low_complexity 4 70 0 335 262 98 33 chr4 18022780 18022902 -184305445 + MIR SINE MIR 16 145 -63 304 386 83 0 chr4 18023373 18023505 -184304842 - L2 LINE L2 -19 3253 3111 402 239 189 57 chr4 18023556 18023715 -184304632 + MER5A DNA MER1_type 9 188 -1 360 281 10 0 chr4 18023751 18023847 -184304500 + MER81 DNA DNA 18 114 0 356 318 34 47 chr4 18024448 18024574 -184303773 + MIR SINE MIR 19 144 -118 3191 177 3 51 chr4 18024574 18025207 -184303140 - MER77 LTR ERV1 -2 603 1 356 318 34 47 chr4 18025207 18025228 -184303119 + MIR SINE MIR 144 164 -98 23 0 0 0 chr4 18025493 18025516 -184302831 + AT_rich Low_complexity Low_complexity 1 23 0 2741 229 89 50 chr4 18025516 18026359 -184301988 - HAL1b LINE L1 0 1348 446 2170 125 3 0 chr4 18026359 18026656 -184301691 + AluY SINE Alu 1 298 -13 2741 229 89 50 chr4 18026656 18026967 -184301380 - HAL1b LINE L1 -902 446 149 1732 278 100 2 chr4 18026970 18027840 -184300507 + L2 LINE L2 2224 3184 -129 1719 176 15 43 chr4 18028884 18029276 -184299071 - MLT1B LTR MaLR -9 381 1 290 258 102 16 chr4 18030429 18030557 -184297790 + L2 LINE L2 2567 2705 -609 206 343 30 0 chr4 18030931 18030998 -184297349 + L2 LINE L2 3245 3313 0 225 368 82 35 chr4 18031233 18031404 -184296943 - L3 LINE CR1 -11 1566 1388 470 356 42 9 chr4 18031507 18031723 -184296624 - L3 LINE CR1 -215 1362 1140 1477 233 55 19 chr4 18031785 18032218 -184296129 - LTR40b LTR ERVL 0 462 14 486 233 113 27 chr4 18032774 18032924 -184295423 - L2 LINE L2 0 3313 3151 1757 236 89 44 chr4 18032952 18034224 -184294123 + L1M2a LINE L1 1 2311 -4787 970 301 39 9 chr4 18034784 18035116 -184293231 - LTR16C LTR ERVL 0 491 150 4295 74 18 6 chr4 18035388 18036408 -184291939 + MER11A LTR ERVK 1 1266 0 1934 162 0 19 chr4 18036570 18036878 -184291469 + AluJo SINE Alu 1 302 -10 414 0 0 0 chr4 18037339 18037385 -184290962 + (CA)n Simple_repeat Simple_repeat 2 47 0 409 405 75 15 chr4 18037924 18038575 -184289772 - L2 LINE L2 -2207 1107 418 507 270 109 49 chr4 18038932 18039188 -184289159 + MIR SINE MIR 3 262 0 209 268 0 36 chr4 18040527 18040583 -184287764 + GA-rich Low_complexity Low_complexity 2 55 0 1323 203 89 12 chr4 18040592 18040918 -184287429 - MER39 LTR ERV1 0 707 357 1901 166 58 37 chr4 18040967 18041486 -184286861 + MLT2A2 LTR ERVL 1 553 -1 383 239 0 11 chr4 18041496 18041588 -184286759 - MER39 LTR ERV1 -616 91 1 281 330 35 0 chr4 18042651 18042766 -184285581 - MIR SINE MIR -42 220 102 439 239 162 48 chr4 18042781 18042948 -184285399 - MER5A DNA MER1_type 0 189 4 378 301 102 93 chr4 18043168 18043610 -184284737 - L2 LINE L2 0 3272 2827 536 348 12 43 chr4 18043982 18044238 -184284109 - MIR SINE MIR -2 260 13 468 271 35 106 chr4 18044512 18044647 -184283700 - MLT1I LTR MaLR -3 406 263 2061 108 74 37 chr4 18044647 18044998 -184283349 + THE1B LTR MaLR 1 364 0 468 271 35 106 chr4 18044998 18045239 -184283108 - MLT1I LTR MaLR -146 263 57 263 195 26 80 chr4 18046657 18046714 -184281633 - L1ME4a LINE L1 -5 6116 6066 2247 99 0 23 chr4 18046714 18047016 -184281331 + AluSq SINE Alu 1 295 -18 263 195 26 80 chr4 18047016 18047071 -184281276 - L1ME4a LINE L1 -55 6066 6010 279 234 90 62 chr4 18047290 18047435 -184280912 + MLT1I LTR MaLR 70 218 -191 301 273 76 15 chr4 18047630 18047828 -184280519 - L1ME4a LINE L1 -262 5859 5650 371 190 134 35 chr4 18047999 18048141 -184280206 - L1ME4a LINE L1 -2337 5471 5316 28 48 0 0 chr4 18048346 18048388 -184279959 + AT_rich Low_complexity Low_complexity 1 42 0 620 224 58 54 chr4 18048450 18048655 -184279692 - L2 LINE L2 0 3313 3108 288 267 30 15 chr4 18048756 18048891 -184279456 + MER65A LTR ERV1 1 137 -308 472 285 29 24 chr4 18049383 18049590 -184278757 - LTR16B LTR ERVL -151 313 106 319 268 124 45 chr4 18049706 18049971 -184278376 - L1ME4a LINE L1 -1713 4433 4148 407 294 44 44 chr4 18050227 18050475 -184277872 - L1ME4a LINE L1 -2836 3310 3063 577 247 119 46 chr4 18050585 18050779 -184277568 + MIR SINE MIR 43 250 -12 289 393 0 9 chr4 18051211 18051323 -184277024 + MIR SINE MIR 36 146 -62 467 241 95 9 chr4 18052718 18052834 -184275513 + L2 LINE L2 3188 3313 0 225 282 201 40 chr4 18052842 18052991 -184275356 - MIR SINE MIR -87 175 3 214 323 111 10 chr4 18052995 18053094 -184275253 + L3 LINE CR1 1112 1220 -357 212 292 15 0 chr4 18053118 18053183 -184275164 + MIR3 SINE MIR 95 160 -48 473 301 68 0 chr4 18053183 18053359 -184274988 - MER117 DNA MER1_type 0 197 10 542 189 9 0 chr4 18053476 18053582 -184274765 + MER7A DNA MER2_type 1 105 -241 14134 175 60 18 chr4 18053604 18060192 -184268155 - L1PB3 LINE L1 0 6870 6 328 255 21 48 chr4 18060938 18061083 -184267264 - LTR67 LTR ERVL -5 552 412 368 292 161 18 chr4 18061577 18061745 -184266602 - MIR SINE MIR -70 192 1 545 236 19 0 chr4 18061981 18062087 -184266260 + L2 LINE L2 3164 3271 -1 227 241 0 0 chr4 18062084 18062138 -184266209 - MIR SINE MIR 0 262 209 * 240 217 54 33 chr4 18062360 18062452 -184265895 - MLT1L LTR MaLR -329 286 193 243 299 75 9 chr4 18062589 18062696 -184265651 - MLT1K LTR MaLR -443 145 32 584 241 64 32 chr4 18063200 18063387 -184264960 + L2 LINE L2 3117 3309 -4 186 43 0 0 chr4 18066251 18066274 -184262073 + (TC)n Simple_repeat Simple_repeat 2 24 0 315 169 84 14 chr4 18067091 18067162 -184261185 + MIR SINE MIR 66 141 -121 1117 174 38 5 chr4 18067536 18067748 -184260599 + MER20 DNA MER1_type 1 219 0 219 105 53 0 chr4 18069059 18069097 -184259250 + T-rich Low_complexity Low_complexity 3 42 0 2133 99 0 0 chr4 18069681 18069985 -184258362 + AluY SINE Alu 1 304 0 208 255 0 0 chr4 18070046 18070093 -184258254 + L2 LINE L2 3158 3204 -68 198 0 0 0 chr4 18070398 18070420 -184257927 + (TA)n Simple_repeat Simple_repeat 2 23 0 297 299 93 0 chr4 18070785 18070882 -184257465 + MIR SINE MIR 104 209 -53 377 290 91 8 chr4 18071023 18071162 -184257185 + MIR3 SINE MIR 15 161 -63 285 29 0 0 chr4 18072282 18072316 -184256031 + (TTG)n Simple_repeat Simple_repeat 2 35 0 390 239 268 7 chr4 18072626 18072768 -184255579 + MIR SINE MIR 84 262 0 493 295 44 13 chr4 18072882 18073150 -184255197 - L2 LINE L2 -223 3049 2782 249 284 47 71 chr4 18073491 18073554 -184254793 - L2 LINE L2 -1 3312 3252 1960 166 31 8 chr4 18073554 18073909 -184254438 - MLT1A1 LTR MaLR 0 365 3 249 284 47 71 chr4 18073909 18073972 -184254375 - L2 LINE L2 -61 3252 3189 215 211 70 42 chr4 18075520 18075591 -184252756 + MIR3 SINE MIR 130 202 -6 6206 136 63 24 chr4 18076471 18076741 -184251606 + Tigger3b DNA MER2_type 5 263 -2765 2532 57 0 0 chr4 18076741 18077038 -184251309 - AluY SINE Alu -14 297 1 6206 136 63 24 chr4 18077038 18077947 -184250400 + Tigger3b DNA MER2_type 263 1230 -1 2601 58 0 0 chr4 18077994 18078305 -184250042 - AluY SINE Alu 0 311 1 367 243 76 97 chr4 18078342 18078486 -184249861 + MIR3 SINE MIR 18 158 -50 317 283 167 45 chr4 18079136 18079694 -184248653 - L1ME4a LINE L1 -14 6107 5482 1012 44 0 22 chr4 18079749 18079886 -184248461 + L1PA4 LINE L1 6022 6155 0 490 204 128 76 chr4 18080170 18080538 -184247809 + MLT1C LTR MaLR 6 387 -3 297 282 0 24 chr4 18080682 18080767 -184247580 - L2 LINE L2 -4 3309 3227 2199 112 0 0 chr4 18081194 18081488 -184246859 - AluSg SINE Alu -16 294 1 1311 223 52 52 chr4 18081628 18082013 -184246334 - MLT1B LTR MaLR -5 385 1 231 366 38 15 chr4 18082139 18082270 -184246077 - L2 LINE L2 -277 2995 2862 182 321 24 24 chr4 18082597 18082681 -184245666 - MIR SINE MIR -106 102 19 280 302 23 0 chr4 18083877 18083963 -184244384 - MIR SINE MIR -12 250 163 263 324 64 6 chr4 18084337 18084510 -184243837 - Charlie8 DNA MER1_type -1957 460 278 830 240 11 6 chr4 18084705 18084884 -184243463 - MER5A DNA MER1_type -7 182 3 448 344 112 6 chr4 18085142 18085473 -184242874 + L3b LINE CR1 1108 1473 -110 966 261 66 3 chr4 18085513 18085877 -184242470 - MER113 DNA MER1_type? 0 521 135 1879 152 72 26 chr4 18086021 18086369 -184241978 - THE1B LTR MaLR 0 364 1 276 350 29 0 chr4 18086441 18086544 -184241803 - MIR3 SINE MIR -48 160 55 429 109 0 0 chr4 18088272 18088336 -184240011 + (TG)n Simple_repeat Simple_repeat 2 65 0 268 260 117 0 chr4 18088345 18088422 -184239925 + L3 LINE CR1 1242 1327 -250 264 373 0 0 chr4 18088409 18088484 -184239863 + MER91 DNA MER1_type 66 140 0 * 1231 291 87 6 chr4 18088514 18088999 -184239348 + MLT1H LTR MaLR 11 534 -15 355 299 137 0 chr4 18089707 18089824 -184238523 - MER5B DNA MER1_type -45 133 1 348 228 105 0 chr4 18090208 18090322 -184238025 - MLT1L LTR MaLR -72 543 418 696 215 27 7 chr4 18090489 18090638 -184237709 - MLT1L LTR MaLR -423 192 41 22 0 0 0 chr4 18090672 18090694 -184237653 + AT_rich Low_complexity Low_complexity 1 22 0 2237 104 3 7 chr4 18090731 18091029 -184237318 - AluSg SINE Alu -13 297 1 818 212 140 93 chr4 18091358 18091873 -184236474 + L1MC5 LINE L1 6695 7233 -728 1225 106 80 73 chr4 18091923 18092198 -184236149 + Tigger7 DNA MER2_type 2211 2487 0 312 311 68 44 chr4 18092241 18092447 -184235900 - HAL1 LINE L1 -1472 1035 825 845 149 144 45 chr4 18092499 18092700 -184235647 + ORSL DNA AcHobo 42 262 -13 2614 254 33 9 chr4 18093647 18094195 -184234152 - L1M4 LINE L1 -1384 4762 4229 2402 81 7 0 chr4 18094195 18094491 -184233856 + AluSc SINE Alu 1 298 -11 2614 254 33 9 chr4 18094491 18094715 -184233632 - L1M4 LINE L1 -1917 4229 3963 2598 111 0 11 chr4 18094715 18095083 -184233264 - THE1B LTR MaLR 0 364 1 2614 254 33 9 chr4 18095083 18095206 -184233141 - L1M4 LINE L1 -2183 3963 3844 1021 167 84 152 chr4 18095207 18095689 -184232658 - MLT2D LTR ERVL -8 512 1 1003 219 117 6 chr4 18095691 18096034 -184232313 - L1M4 LINE L1 -2291 3855 3475 713 232 171 37 chr4 18096031 18096492 -184231855 - L1MDa LINE L1 -4933 1607 1085 * 2514 39 0 13 chr4 18096897 18097202 -184231145 - AluY SINE Alu -10 301 1 445 323 32 0 chr4 18099162 18099317 -184229030 - MIR SINE MIR -71 191 32 280 358 156 0 chr4 18099328 18099437 -184228910 - L2 LINE L2 -18 3254 3129 2569 121 5 0 chr4 18101857 18102230 -184226117 - THE1C LTR MaLR 0 375 1 228 184 0 0 chr4 18102498 18102547 -184225800 + (CA)n Simple_repeat Simple_repeat 2 50 0 302 326 182 0 chr4 18103268 18103400 -184224947 + L2 LINE L2 3112 3267 -5 647 327 118 14 chr4 18103519 18103883 -184224464 - L3 LINE CR1 -218 1359 958 2733 93 3 3 chr4 18104109 18104473 -184223874 + THE1B LTR MaLR 1 364 0 590 308 61 66 chr4 18104476 18105116 -184223231 + L2 LINE L2 1806 2442 -872 1812 132 10 0 chr4 18105384 18105672 -184222675 + L1PA13 LINE L1 5864 6154 -9 23 0 0 0 chr4 18105673 18105696 -184222651 + AT_rich Low_complexity Low_complexity 1 23 0 308 336 29 7 chr4 18105882 18106019 -184222328 + MIR3 SINE MIR 69 208 0 311 280 8 8 chr4 18106754 18106886 -184221461 - HAL1 LINE L1 -109 2398 2267 1088 60 0 0 chr4 18107094 18107228 -184221119 + AluY SINE Alu 164 297 -14 383 310 76 0 chr4 18107249 18107394 -184220953 - MLT1J LTR MaLR -328 183 28 333 214 95 71 chr4 18107488 18107614 -184220733 - HAL1 LINE L1 -285 2222 2094 325 248 61 71 chr4 18107735 18107933 -184220414 - MLT1H LTR MaLR -237 312 117 336 314 78 16 chr4 18108189 18108434 -184219913 - HAL1 LINE L1 -1658 849 590 2022 142 0 3 chr4 18108463 18108751 -184219596 - AluSx SINE Alu -25 287 1 1892 145 46 25 chr4 18108937 18109303 -184219044 + THE1C LTR MaLR 2 375 0 313 295 96 0 chr4 18109317 18109473 -184218874 + L1ME3A LINE L1 5706 5876 -294 23 0 0 0 chr4 18109543 18109566 -184218781 + AT_rich Low_complexity Low_complexity 1 23 0 2041 142 31 25 chr4 18109844 18110204 -184218143 - THE1B LTR MaLR 0 364 3 10591 95 7 11 chr4 18110206 18111668 -184216679 - THE1B-int LTR MaLR 0 1580 123 2189 81 41 14 chr4 18111668 18111963 -184216384 - AluY SINE Alu -8 303 1 10591 95 7 11 chr4 18111963 18112023 -184216324 - THE1B-int LTR MaLR -1457 123 64 2141 133 36 25 chr4 18112048 18112408 -184215939 - THE1B LTR MaLR 0 364 1 255 288 105 26 chr4 18112727 18113071 -184215276 + L1M4 LINE L1 2112 2482 -3664 269 329 69 4 chr4 18113331 18113560 -184214787 + LTR33A LTR ERVL 269 512 -11 1760 236 43 52 chr4 18113560 18114140 -184214207 - MLT1E2 LTR MaLR 0 626 52 310 275 25 0 chr4 18114404 18114494 -184213853 - MIR SINE MIR -65 143 64 180 253 88 77 chr4 18114672 18114763 -184213584 + L2 LINE L2 321 412 -2902 313 257 92 46 chr4 18114807 18114916 -184213431 + MIR SINE MIR 148 261 -1 329 276 71 0 chr4 18114927 18115025 -184213322 + MIR SINE MIR 100 204 -58 357 234 113 10 chr4 18116168 18116291 -184212056 + MIR SINE MIR 34 168 -67 229 283 17 17 chr4 18118220 18118280 -184210067 - L2 LINE L2 -12 3260 3201 198 255 226 29 chr4 18118307 18118409 -184209938 + MIR SINE MIR 104 225 -37 353 323 8 23 chr4 18118647 18118780 -184209567 + MIR SINE MIR 11 141 -121 1075 273 53 28 chr4 18118805 18119013 -184209334 - MLT1J1 LTR MaLR 0 446 245 1528 186 0 58 chr4 18119013 18119324 -184209023 - AluJo SINE Alu -1 311 19 1075 273 53 28 chr4 18119324 18119511 -184208836 - MLT1J1 LTR MaLR -201 245 41 347 284 20 10 chr4 18119571 18119673 -184208674 + MIR SINE MIR 157 259 -3 1050 323 38 14 chr4 18119694 18120329 -184208018 + L1MEc LINE L1 1204 1995 -4568 4851 114 6 0 chr4 18120334 18121054 -184207293 - L1PA14 LINE L1 -3 6158 5435 4109 209 22 0 chr4 18121054 18121871 -184206476 - L1PA12 LINE L1 -6746 835 1 48 60 0 0 chr4 18121927 18122010 -184206337 + AT_rich Low_complexity Low_complexity 1 83 0 471 247 41 62 chr4 18122158 18122221 -184206126 + L1MEc LINE L1 2191 2254 -4309 9949 85 3 3 chr4 18122221 18124373 -184203974 - L1PA7 LINE L1 -11 6143 3995 471 247 41 62 chr4 18124373 18124677 -184203670 + L1MEc LINE L1 2254 2550 -4013 23 0 0 0 chr4 18124709 18124732 -184203615 + AT_rich Low_complexity Low_complexity 1 23 0 2176 247 49 22 chr4 18124739 18125619 -184202728 + L1MEc LINE L1 3356 4259 -2123 1994 147 0 0 chr4 18125938 18126223 -184202124 + AluSx SINE Alu 1 285 -27 260 252 151 8 chr4 18126836 18126955 -184201392 + MIR3 SINE MIR 5 140 -68 684 242 121 20 chr4 18127442 18127739 -184200608 + MER46C DNA MER2_type 6 332 -6 2272 116 0 3 chr4 18127751 18128062 -184200285 - AluSx SINE Alu -2 310 1 344 280 38 45 chr4 18129050 18129207 -184199140 - MIR SINE MIR -50 212 57 1985 140 3 0 chr4 18129224 18129524 -184198823 + AluSx SINE Alu 1 301 -11 306 209 30 0 chr4 18129799 18129866 -184198481 - L1ME4a LINE L1 -6 6115 6047 413 289 54 82 chr4 18129990 18130284 -184198063 - L1ME LINE L1 -571 5550 5265 308 345 50 47 chr4 18130319 18130577 -184197770 - L1ME LINE L1 -924 5222 4964 25 31 0 0 chr4 18131695 18131727 -184196620 + AT_rich Low_complexity Low_complexity 1 32 0 458 205 18 18 chr4 18131966 18132078 -184196269 + L1ME LINE L1 5616 5727 -394 1078 274 89 6 chr4 18132601 18132962 -184195385 - MLT1F1 LTR MaLR 0 567 177 286 77 0 0 chr4 18132998 18133037 -184195310 + MER53 DNA DNA 1 39 -150 1188 218 110 5 chr4 18133037 18133483 -184194864 + L1 LINE L1 2984 3476 -2670 2482 150 27 23 chr4 18133484 18133958 -184194389 + L1MB2 LINE L1 5678 6153 -18 809 182 6 0 chr4 18133986 18134156 -184194191 + MER53 DNA DNA 15 185 -4 576 260 7 13 chr4 18134171 18134325 -184194022 - MLT1F1 LTR MaLR -438 155 3 568 175 7 91 chr4 18134415 18134558 -184193789 + MER94 DNA DNA 1 131 -3 317 304 22 43 chr4 18134902 18135040 -184193307 + MIR SINE MIR 8 142 -120 197 109 65 87 chr4 18135082 18135128 -184193219 - L2 LINE L2 0 3313 3269 1661 211 49 51 chr4 18135742 18136229 -184192118 - MLT1D LTR MaLR 0 505 20 188 346 39 0 chr4 18136499 18136577 -184191770 + MIR SINE MIR 30 110 -98 318 343 49 7 chr4 18136688 18136831 -184191516 - L2 LINE L2 -9 3263 3115 656 178 27 0 chr4 18137121 18137267 -184191080 + L1MA4 LINE L1 6151 6300 0 215 286 112 31 chr4 18138794 18138892 -184189455 - MIR SINE MIR -71 137 32 2304 81 7 10 chr4 18139043 18139338 -184189009 + AluSx SINE Alu 5 298 -14 582 273 99 67 chr4 18140101 18140822 -184187525 + L1MC5 LINE L1 7101 7846 -196 2985 115 14 18 chr4 18140822 18141266 -184187081 + L1PB3 LINE L1 5711 6152 -2 582 273 99 67 chr4 18141266 18141425 -184186922 + L1MC5 LINE L1 7846 7998 -44 256 368 34 39 chr4 18141576 18141780 -184186567 - MIR3 SINE MIR -2 206 4 275 330 153 0 chr4 18142055 18142173 -184186174 + MIR3 SINE MIR 8 143 -65 2075 106 32 0 chr4 18143078 18143360 -184184987 + AluSx SINE Alu 1 291 -21 22 0 0 0 chr4 18143626 18143648 -184184699 + AT_rich Low_complexity Low_complexity 1 22 0 470 252 13 96 chr4 18143713 18143943 -184184404 - L1ME4a LINE L1 -76 6045 5835 251 281 49 12 chr4 18144304 18144386 -184183961 - MIR SINE MIR -48 214 130 765 319 95 11 chr4 18144387 18144766 -184183581 - LTR67 LTR ERVL -114 443 33 1479 172 0 47 chr4 18144793 18145113 -184183234 + AluJo SINE Alu 1 306 0 189 0 0 0 chr4 18145961 18145982 -184182365 + (CA)n Simple_repeat Simple_repeat 2 22 0 354 256 70 31 chr4 18146604 18146733 -184181614 + MIR3 SINE MIR 8 141 -67 514 328 50 17 chr4 18146981 18147222 -184181125 - MIR SINE MIR -6 256 8 23 0 0 0 chr4 18147371 18147394 -184180953 + AT_rich Low_complexity Low_complexity 1 23 0 615 193 52 62 chr4 18148216 18148408 -184179939 + MER112 DNA MER1_type 67 256 -4 529 73 0 0 chr4 18149224 18149292 -184179055 - L1PA11 LINE L1 -3 6171 6104 277 108 0 0 chr4 18149292 18149329 -184179018 + L1PA11 LINE L1 6071 6107 -67 1292 122 16 5 chr4 18149331 18149519 -184178828 + AluSp SINE Alu 108 297 -16 3897 139 12 47 chr4 18150339 18151017 -184177330 + L1MA10 LINE L1 5681 6334 0 270 233 0 55 chr4 18151129 18151202 -184177145 - L3 LINE CR1 -611 966 898 335 286 86 0 chr4 18151950 18152125 -184176222 + L2 LINE L2 2821 3010 -303 2419 77 0 10 chr4 18152134 18152446 -184175901 - AluSc SINE Alu 0 309 1 785 274 108 48 chr4 18152485 18152919 -184175428 - MLT1L LTR MaLR 0 615 156 565 252 26 32 chr4 18153153 18153308 -184175039 + L2 LINE L2 3160 3313 0 238 313 26 17 chr4 18153558 18153673 -184174674 + L2 LINE L2 2383 2498 -816 3465 38 10 2 chr4 18154889 18155289 -184173058 - L1PA4 LINE L1 -3 6152 5750 1044 0 0 0 chr4 18155289 18155400 -184172947 + L1P1 LINE L1 5546 5656 -499 1752 243 61 73 chr4 18155961 18156525 -184171822 - MLT1E LTR MaLR -4 569 1 231 188 0 0 chr4 18156531 18156579 -184171768 + CT-rich Low_complexity Low_complexity 1 48 0 1543 221 17 34 chr4 18156660 18157017 -184171330 - MLT1A1 LTR MaLR -14 351 1 257 280 44 110 chr4 18157032 18157214 -184171133 - L2 LINE L2 -109 3163 2994 192 306 0 0 chr4 18157227 18157276 -184171071 + L2 LINE L2 3219 3267 -5 1839 149 17 17 chr4 18157633 18157935 -184170412 - AluSx SINE Alu -5 307 6 524 309 68 19 chr4 18157951 18158158 -184170189 + Tigger8 DNA MER2_type 25 241 -425 3399 139 28 15 chr4 18158252 18158786 -184169561 - L1PB4 LINE L1 0 6156 5616 802 230 73 90 chr4 18158847 18159005 -184169342 + Tigger8 DNA MER2_type 205 364 -302 2561 63 0 3 chr4 18159005 18159308 -184169039 + AluY SINE Alu 1 302 -9 802 230 73 90 chr4 18159308 18159614 -184168733 + Tigger8 DNA MER2_type 364 661 -5 328 268 62 9 chr4 18160564 18160676 -184167671 - MIR SINE MIR -73 135 18 208 324 29 39 chr4 18160703 18160781 -184167566 - L2 LINE L2 -225 3047 2969 1874 163 64 14 chr4 18160781 18161125 -184167222 - MLT1A1 LTR MaLR 0 365 5 208 324 29 39 chr4 18161125 18161148 -184167199 - L2 LINE L2 -303 2969 2947 182 261 114 45 chr4 18161479 18161567 -184166780 - MIR SINE MIR -147 115 22 329 268 58 58 chr4 18162127 18162265 -184166082 - MIR SINE MIR -79 183 46 357 279 0 0 chr4 18162568 18162654 -184165693 - MIR SINE MIR -21 241 156 257 293 113 0 chr4 18162789 18162895 -184165452 - MIR SINE MIR -73 135 18 410 274 43 0 chr4 18162943 18163060 -184165287 + MIR SINE MIR 67 188 -74 458 277 36 0 chr4 18163752 18163889 -184164458 + MIR3 SINE MIR 60 201 -7 524 219 34 0 chr4 18164194 18164313 -184164034 - MER94 DNA DNA -8 126 4 387 241 65 80 chr4 18164337 18164536 -184163811 - MIR SINE MIR -18 244 49 263 315 28 9 chr4 18164919 18165027 -184163320 + MIR SINE MIR 28 137 -125 443 316 76 99 chr4 18165239 18165903 -184162444 + L2 LINE L2 2553 3214 -58 223 175 0 0 chr4 18165936 18165976 -184162371 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 201 186 0 0 chr4 18166376 18166390 -184161957 + GA-rich Low_complexity Low_complexity 2 15 -29 2125 138 3 0 chr4 18166390 18166686 -184161661 + AluSx SINE Alu 1 297 -15 201 186 0 0 chr4 18166686 18166714 -184161633 + GA-rich Low_complexity Low_complexity 14 44 0 492 284 135 62 chr4 18166922 18167373 -184160974 + MLT1J LTR MaLR 5 488 -23 242 302 10 62 chr4 18167666 18167762 -184160585 + L2 LINE L2 3007 3097 -175 314 333 106 8 chr4 18167864 18167987 -184160360 - L2 LINE L2 -19 3253 3119 186 298 21 0 chr4 18168040 18168087 -184160260 - MIR SINE MIR -207 55 8 * 196 242 48 16 chr4 18168073 18168135 -184160212 + L2 LINE L2 2206 2269 -1045 482 119 24 0 chr4 18168227 18168311 -184160036 + L1MA10 LINE L1 6249 6334 0 255 160 20 20 chr4 18168760 18168810 -184159537 + L2 LINE L2 3215 3264 -8 2693 142 5 10 chr4 18169243 18169653 -184158694 + L1PA16 LINE L1 5759 6166 0 2161 122 0 10 chr4 18169957 18170260 -184158087 + AluJb SINE Alu 1 300 -12 706 200 36 0 chr4 18170725 18170865 -184157482 + MER5A DNA MER1_type 1 145 -44 1386 163 49 30 chr4 18171417 18171858 -184156489 + LTR54 LTR ERV1 1 403 0 686 201 71 19 chr4 18171878 18172032 -184156315 + MIR SINE MIR 67 228 -34 207 0 0 0 chr4 18172641 18172664 -184155683 + (T)n Simple_repeat Simple_repeat 1 23 0 201 39 0 0 chr4 18173610 18173636 -184154711 + (TG)n Simple_repeat Simple_repeat 2 27 0 304 294 34 42 chr4 18174371 18174490 -184153857 + LTR67 LTR ERVL 429 546 -11 497 290 90 25 chr4 18174670 18174870 -184153477 + MIR SINE MIR 7 219 -43 315 259 61 41 chr4 18174948 18175095 -184153252 - L1MEc LINE L1 -4066 2330 2181 638 156 40 0 chr4 18175136 18175309 -184153038 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2236 122 55 12 chr4 18175326 18175669 -184152678 - THE1B LTR MaLR -6 358 1 587 71 12 0 chr4 18175685 18175770 -184152577 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 248 327 6 42 chr4 18175779 18175944 -184152403 - L1MEc LINE L1 -4317 2079 1921 1160 189 38 9 chr4 18176122 18176334 -184152013 - MER20 DNA MER1_type -1 218 1 285 230 0 0 chr4 18176551 18176625 -184151722 + (TG)n Simple_repeat Simple_repeat 2 75 0 448 192 0 0 chr4 18176857 18176935 -184151412 - MER20 DNA MER1_type -30 189 112 180 237 165 41 chr4 18177138 18177235 -184151112 + MIR3 SINE MIR 81 189 -19 368 348 83 43 chr4 18177258 18177655 -184150692 + L3 LINE CR1 281 693 -884 2272 119 0 6 chr4 18177698 18178010 -184150337 + AluSq SINE Alu 1 310 -3 438 325 13 20 chr4 18179521 18179672 -184148675 - L2 LINE L2 -1 3312 3163 2531 200 95 25 chr4 18179673 18180314 -184148033 + MER76 LTR ERV 1 686 -2 397 272 238 19 chr4 18181524 18181931 -184146416 - L2 LINE L2 -183 3130 2624 215 139 0 23 chr4 18182068 18182111 -184146236 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 372 238 38 38 chr4 18182642 18182747 -184145600 - MIR SINE MIR -3 259 155 2595 139 35 2 chr4 18182747 18183150 -184145197 + LTR45B LTR ERV1 3 418 -71 234 0 0 0 chr4 18183154 18183180 -184145167 + (A)n Simple_repeat Simple_repeat 1 26 0 321 238 36 0 chr4 18183246 18183330 -184145017 - MIR SINE MIR -106 156 70 745 277 85 0 chr4 18183618 18183806 -184144541 - MER63A DNA MER1_type -5 205 2 463 220 76 34 chr4 18184491 18184609 -184143738 - L2 LINE L2 -16 3297 3175 527 276 102 30 chr4 18184824 18185055 -184143292 + MIR SINE MIR 14 258 -4 21 0 0 0 chr4 18185069 18185090 -184143257 + AT_rich Low_complexity Low_complexity 1 21 0 413 319 7 22 chr4 18186165 18186303 -184142044 - MER5A DNA MER1_type 0 189 54 1151 197 62 97 chr4 18186358 18186515 -184141832 - L1MC4 LINE L1 -751 7291 7130 1942 146 10 10 chr4 18186515 18186816 -184141531 - AluSx SINE Alu -8 304 4 1151 197 62 97 chr4 18186816 18187124 -184141223 - L1MC4 LINE L1 -912 7130 6842 1425 212 8 79 chr4 18187161 18187653 -184140694 + L1MC4 LINE L1 7347 7808 0 21 36 0 0 chr4 18187752 18187780 -184140567 + AT_rich Low_complexity Low_complexity 1 28 0 285 261 36 18 chr4 18187829 18187940 -184140407 - MER113 DNA MER1_type? -401 120 8 2051 133 0 3 chr4 18188135 18188442 -184139905 + AluSx SINE Alu 1 306 0 704 163 98 0 chr4 18188455 18188578 -184139769 + AluJb SINE Alu 2 136 -176 1422 204 25 4 chr4 18188579 18188853 -184139494 + AluJb SINE Alu 3 282 -30 192 97 0 0 chr4 18188858 18188889 -184139458 + (CAA)n Simple_repeat Simple_repeat 2 32 0 385 170 170 11 chr4 18189507 18189601 -184138746 - MER5A DNA MER1_type -77 112 4 316 367 61 0 chr4 18190130 18190228 -184138119 + L2 LINE L2 3153 3256 -16 766 196 30 12 chr4 18190277 18190445 -184137902 - MER104 DNA Tc2 -4 176 6 4364 77 3 19 chr4 18190583 18191157 -184137190 - L1PB2 LINE L1 0 6151 5587 2950 94 11 3 chr4 18191519 18191891 -184136456 - THE1C LTR MaLR 0 375 1 477 252 113 0 chr4 18192164 18192323 -184136024 + MIR SINE MIR 86 262 0 199 81 0 108 chr4 18194225 18194262 -184134085 + MIR SINE MIR 220 252 -10 1744 102 4 0 chr4 18194340 18194565 -184133782 + AluSp SINE Alu 3 228 -85 247 353 33 27 chr4 18195174 18195324 -184133023 - L2 LINE L2 -190 3082 2932 1367 178 90 90 chr4 18195447 18195522 -184132825 + MLT1A1 LTR MaLR 1 75 -290 2409 82 0 3 chr4 18195522 18195826 -184132521 - AluY SINE Alu -6 305 3 1367 178 90 90 chr4 18195826 18196115 -184132232 + MLT1A1 LTR MaLR 74 365 0 2465 97 0 0 chr4 18196374 18196682 -184131665 + AluSq SINE Alu 1 308 -5 832 240 64 0 chr4 18197321 18197525 -184130822 + MIR SINE MIR 36 252 -10 1106 283 61 23 chr4 18197525 18197917 -184130430 - MLT1I LTR MaLR 0 409 3 229 274 0 0 chr4 18198096 18198147 -184130200 + (CA)n Simple_repeat Simple_repeat 2 52 0 2173 125 0 0 chr4 18198255 18198551 -184129796 + AluSx SINE Alu 1 296 -16 243 125 0 0 chr4 18198696 18198736 -184129611 + (CA)n Simple_repeat Simple_repeat 1 40 0 414 330 57 14 chr4 18198877 18199086 -184129261 + L2 LINE L2 2366 2583 -731 394 244 0 0 chr4 18199089 18199167 -184129180 - MER20 DNA MER1_type -1 218 141 3766 214 100 18 chr4 18199167 18200708 -184127639 + L1MCb LINE L1 273 1936 -4490 4058 149 32 11 chr4 18200709 18201372 -184126975 - L1PB4 LINE L1 0 6156 5480 5258 94 12 1 chr4 18201375 18202067 -184126280 + L1PA10 LINE L1 5465 6163 -5 1719 161 43 2 chr4 18202067 18202519 -184125828 - L1PB4 LINE L1 -677 5479 5017 * 4266 186 33 8 chr4 18202517 18203394 -184124953 + L1PB4 LINE L1 4132 5030 -1116 1761 211 114 13 chr4 18203393 18204026 -184124321 + L1MCb LINE L1 1935 2668 -3939 * 775 332 54 55 chr4 18204100 18204235 -184124112 + L2 LINE L2 2580 2714 -558 1785 150 26 0 chr4 18204235 18204501 -184123846 + AluSx SINE Alu 3 275 -37 238 78 20 20 chr4 18204509 18204560 -184123787 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 775 332 54 55 chr4 18204560 18205109 -184123238 + L2 LINE L2 2721 3272 0 279 271 42 8 chr4 18205120 18205238 -184123109 - L1ME LINE L1 -280 5841 5720 21 0 0 0 chr4 18205251 18205272 -184123075 + AT_rich Low_complexity Low_complexity 1 21 0 245 73 0 24 chr4 18205477 18205518 -184122829 + (GA)n Simple_repeat Simple_repeat 1 40 0 192 40 0 0 chr4 18205674 18205699 -184122648 + (TG)n Simple_repeat Simple_repeat 2 26 0 2675 137 24 18 chr4 18205759 18206443 -184121904 + L1PB1 LINE L1 4983 5668 -498 2865 95 3 0 chr4 18206453 18206822 -184121525 + L1PB1 LINE L1 5782 6151 0 3336 130 8 12 chr4 18206822 18207325 -184121022 + L1PA16 LINE L1 5652 6157 -9 345 109 0 0 chr4 18207439 18207494 -184120853 + (TC)n Simple_repeat Simple_repeat 1 55 0 225 67 0 0 chr4 18207494 18207539 -184120808 - LTR66 LTR ERVL -172 438 394 239 154 0 19 chr4 18207547 18207599 -184120748 + (TA)n Simple_repeat Simple_repeat 1 51 0 254 261 0 14 chr4 18207674 18207743 -184120604 - L1ME LINE L1 -457 5664 5597 2162 118 0 13 chr4 18208131 18208444 -184119903 - AluSc SINE Alu 0 309 1 6518 121 23 0 chr4 18208741 18209738 -184118609 - L1MA9 LINE L1 0 6312 5293 657 247 96 58 chr4 18209959 18210185 -184118162 + L1MC4a LINE L1 5622 5863 -1945 2357 70 0 0 chr4 18210185 18210470 -184117877 - AluY SINE Alu -26 285 1 657 247 96 58 chr4 18210470 18210535 -184117812 + L1MC4a LINE L1 5863 5924 -1884 1244 167 50 0 chr4 18210650 18210848 -184117499 - AluJb SINE Alu -19 293 86 339 345 81 39 chr4 18211105 18211605 -184116742 - L2 LINE L2 0 3272 2730 1678 231 58 22 chr4 18211606 18212052 -184116295 - MLT1C LTR MaLR 0 467 6 183 227 213 13 chr4 18212292 18212367 -184115980 - MIR SINE MIR -147 115 26 375 193 0 0 chr4 18213090 18213173 -184115174 + GA-rich Low_complexity Low_complexity 2 84 0 1997 125 3 10 chr4 18214626 18214929 -184113418 + L1MA5 LINE L1 5998 6298 -2 194 228 89 79 chr4 18215335 18215436 -184112911 - MIR SINE MIR -117 145 44 247 324 10 10 chr4 18215469 18215571 -184112776 + L3 LINE CR1 1315 1416 -161 200 290 45 71 chr4 18216272 18216427 -184111920 + L2 LINE L2 2909 3059 -213 187 238 24 0 chr4 18216742 18216784 -184111563 + L2 LINE L2 3211 3253 -19 345 272 136 43 chr4 18216790 18216906 -184111441 - L2 LINE L2 0 3313 3172 183 42 0 0 chr4 18216906 18216930 -184111417 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 345 272 136 43 chr4 18216930 18216997 -184111350 - L2 LINE L2 -141 3172 3113 829 284 29 16 chr4 18217292 18217535 -184110812 + MIR SINE MIR 8 253 -9 208 250 0 0 chr4 18217937 18217981 -184110366 - MIR SINE MIR -24 238 195 1350 168 50 50 chr4 18218163 18218485 -184109862 - MER33 DNA MER1_type -1 323 2 435 268 131 27 chr4 18218513 18218606 -184109741 - MIR SINE MIR -12 250 168 1379 144 0 106 chr4 18218606 18218870 -184109477 - MER46A DNA MER2_type 0 236 1 435 268 131 27 chr4 18218870 18218985 -184109362 - MIR SINE MIR -94 168 26 351 252 86 36 chr4 18220413 18220552 -184107795 - MIR3 SINE MIR -3 205 60 425 302 23 8 chr4 18220903 18221032 -184107315 - MIR SINE MIR -71 191 61 730 267 92 52 chr4 18222196 18222751 -184105596 + L1ME4a LINE L1 5545 6121 0 414 261 139 24 chr4 18223153 18223318 -184105029 - L2 LINE L2 -4 3309 3126 285 100 0 0 chr4 18223938 18223988 -184104359 + (CA)n Simple_repeat Simple_repeat 2 51 0 213 225 0 99 chr4 18224615 18224686 -184103661 + L2 LINE L2 3249 3312 -1 375 23 0 0 chr4 18225521 18225565 -184102782 + (TG)n Simple_repeat Simple_repeat 2 45 0 2273 118 0 3 chr4 18226075 18226388 -184101959 + AluSx SINE Alu 1 312 0 258 125 0 0 chr4 18227111 18227159 -184101188 + (TC)n Simple_repeat Simple_repeat 2 49 0 207 0 0 0 chr4 18227159 18227182 -184101165 + (CA)n Simple_repeat Simple_repeat 1 23 0 1369 202 6 56 chr4 18227733 18227968 -184100379 - MER33 DNA MER1_type -2261 324 110 2082 139 3 0 chr4 18227968 18228271 -184100076 + AluSx SINE Alu 1 304 -8 1369 202 6 56 chr4 18228271 18228376 -184099971 - MER33 DNA MER1_type -2475 110 1 208 237 92 150 chr4 18230096 18230497 -184097850 + L2 LINE L2 2818 3195 -77 2576 128 81 8 chr4 18230572 18230969 -184097378 + MSTA LTR MaLR 3 428 0 1464 224 33 57 chr4 18231040 18231465 -184096882 + MLT1C LTR MaLR 46 460 -7 280 249 83 35 chr4 18233180 18233349 -184094998 + L1MC4 LINE L1 7784 7960 -82 2142 118 3 0 chr4 18233773 18234061 -184094286 - AluSx SINE Alu -23 289 1 2167 80 11 14 chr4 18234904 18235191 -184093156 - L1PA10 LINE L1 -2 6166 5881 2472 201 56 20 chr4 18235426 18235928 -184092419 - MLT2B1 LTR ERVL 0 520 1 208 308 196 23 chr4 18235953 18236167 -184092180 - MIR SINE MIR 0 262 12 1854 148 0 46 chr4 18236401 18236725 -184091622 + AluSq SINE Alu 1 309 -4 951 234 11 80 chr4 18237387 18237661 -184090686 + MIR SINE MIR 8 262 0 2056 127 170 16 chr4 18237942 18238313 -184090034 + MSTA LTR MaLR 1 428 0 482 292 110 42 chr4 18239507 18239935 -184088412 - L1ME4a LINE L1 -21 6100 5644 385 258 76 0 chr4 18240252 18240384 -184087963 - MIR SINE MIR 0 262 121 51 58 0 0 chr4 18241775 18241861 -184086486 + AT_rich Low_complexity Low_complexity 1 86 0 2150 75 0 8 chr4 18241918 18242186 -184086161 + AluSg SINE Alu 37 302 -8 1116 193 111 57 chr4 18242337 18242705 -184085642 - LTR37A LTR ERV1 0 426 39 1349 278 78 15 chr4 18242954 18243350 -184084997 - LTR16C LTR ERVL 0 491 71 2128 125 23 0 chr4 18243961 18244266 -184084081 + AluSx SINE Alu 1 312 0 278 214 95 12 chr4 18244616 18244700 -184083647 - MIR SINE MIR -120 142 52 255 306 71 0 chr4 18244806 18244904 -184083443 - MIR SINE MIR -120 142 38 2377 142 113 10 chr4 18245359 18245747 -184082600 - MSTA LTR MaLR 0 428 1 2410 110 75 5 chr4 18245748 18246121 -184082226 - MSTA-int LTR MaLR -1 1650 1252 487 316 128 16 chr4 18246145 18246311 -184082036 - L2 LINE L2 0 3313 3167 2408 236 83 11 chr4 18246311 18246862 -184081485 + MLT1E LTR MaLR 1 591 -2 487 316 128 16 chr4 18246862 18247015 -184081332 - L2 LINE L2 -146 3167 2958 291 287 18 49 chr4 18247011 18247175 -184081172 + MIR SINE MIR 96 254 -8 * 2266 119 3 6 chr4 18247556 18247868 -184080479 + AluSx SINE Alu 1 311 -1 282 95 0 0 chr4 18247981 18248023 -184080324 + (CA)n Simple_repeat Simple_repeat 1 42 0 1937 204 13 21 chr4 18248487 18248864 -184079483 + MLT1A2 LTR MaLR 1 374 0 2316 101 7 7 chr4 18249426 18249734 -184078613 + AluSc SINE Alu 1 308 -1 226 186 14 114 chr4 18249755 18249825 -184078522 + MLT1K LTR MaLR 509 571 -17 1020 280 95 63 chr4 18249825 18250980 -184077367 + L2 LINE L2 2116 3313 0 193 348 80 0 chr4 18251402 18251514 -184076833 - MIR3 SINE MIR -1 207 87 228 339 0 0 chr4 18252754 18252819 -184075528 - L2 LINE L2 -6 3266 3202 1494 226 150 93 chr4 18252893 18253431 -184074916 + MLT1E LTR MaLR 1 593 0 1476 234 42 0 chr4 18253431 18253739 -184074608 + MER58B DNA MER1_type 6 326 -15 2274 87 13 3 chr4 18253905 18254204 -184074143 - AluSc SINE Alu -7 302 1 476 300 0 0 chr4 18255808 18255918 -184072429 + MER81 DNA DNA 5 114 0 990 208 81 120 chr4 18256315 18256723 -184071624 - MLT1A1 LTR MaLR -4 361 1 1705 198 78 58 chr4 18256893 18257342 -184071005 - MLT1C LTR MaLR -4 463 6 291 314 148 54 chr4 18257791 18258587 -184069760 + L2 LINE L2 1786 2656 -658 1195 168 53 10 chr4 18258612 18258820 -184069527 - MER20 DNA MER1_type 0 219 3 255 367 67 40 chr4 18258976 18259126 -184069221 + L2 LINE L2 3118 3271 -1 347 333 44 31 chr4 18259466 18259625 -184068722 + MIR SINE MIR 7 167 -95 330 278 66 81 chr4 18259620 18259711 -184068636 - L2 LINE L2 -1 3312 3221 * 2146 108 20 0 chr4 18259711 18260006 -184068341 + AluSx SINE Alu 1 301 -11 330 278 66 81 chr4 18260006 18260112 -184068235 - L2 LINE L2 -92 3221 3118 216 241 0 17 chr4 18260197 18260255 -184068092 + MIR SINE MIR 165 221 -41 552 218 128 62 chr4 18260325 18260573 -184067774 - MIR SINE MIR -6 256 2 962 217 19 28 chr4 18261487 18261699 -184066648 + MER63A DNA MER1_type 1 210 0 446 273 79 14 chr4 18261785 18261924 -184066423 + MIR3 SINE MIR 4 151 -57 1410 200 25 4 chr4 18261924 18262199 -184066148 + AluJo SINE Alu 1 281 -31 335 259 53 111 chr4 18262222 18262411 -184065936 - MER5B DNA MER1_type 0 178 1 2006 262 102 9 chr4 18262445 18262987 -184065360 + MLT1E LTR MaLR 1 592 -1 22 0 0 0 chr4 18263119 18263141 -184065206 + AT_rich Low_complexity Low_complexity 1 22 0 1954 208 94 84 chr4 18263269 18263333 -184065014 - MLT1E LTR MaLR 0 593 531 2496 164 20 18 chr4 18263333 18263777 -184064570 + L1MB2 LINE L1 5710 6157 -14 2907 83 11 3 chr4 18263777 18264138 -184064209 + THE1B LTR MaLR 1 364 0 2496 164 20 18 chr4 18264138 18264149 -184064198 + L1MB2 LINE L1 6157 6166 -5 1954 208 94 84 chr4 18264149 18264670 -184063677 - MLT1E LTR MaLR -62 531 2 381 220 76 0 chr4 18264679 18264784 -184063563 - MIR SINE MIR -62 146 28 1145 110 0 0 chr4 18264844 18264999 -184063348 + L1PA15 LINE L1 6011 6165 0 1430 186 16 86 chr4 18264999 18265035 -184063312 - MER93b LTR ERV1 -7 366 329 2307 94 0 10 chr4 18265035 18265333 -184063014 + AluSp SINE Alu 1 295 -18 1430 186 16 86 chr4 18265333 18265678 -184062669 - MER93b LTR ERV1 -44 329 12 588 42 0 0 chr4 18266043 18266115 -184062232 + AluSp/q SINE Alu 230 301 -12 24 0 0 0 chr4 18266289 18266313 -184062034 + AT_rich Low_complexity Low_complexity 1 24 0 608 254 88 19 chr4 18267340 18267545 -184060802 + MIR SINE MIR 3 221 -41 352 259 113 88 chr4 18267730 18267969 -184060378 + L2 LINE L2 3027 3271 -1 746 186 118 0 chr4 18268255 18268416 -184059931 + MER104 DNA MER2_type 1 180 0 195 100 0 0 chr4 18269215 18269245 -184059102 + (TC)n Simple_repeat Simple_repeat 2 31 0 198 71 0 0 chr4 18269245 18269273 -184059074 + (CA)n Simple_repeat Simple_repeat 1 28 0 412 273 40 13 chr4 18269868 18270018 -184058329 - MER103 DNA DNA -10 156 3 438 340 72 0 chr4 18270077 18270230 -184058117 + MIR3 SINE MIR 38 201 -7 28 0 0 0 chr4 18271489 18271517 -184056830 + AT_rich Low_complexity Low_complexity 1 28 0 249 271 0 0 chr4 18271793 18271852 -184056495 + MER3 DNA MER1_type 3 61 -148 811 152 97 14 chr4 18271935 18272080 -184056267 + MER3 DNA MER1_type 53 209 0 244 350 60 16 chr4 18272458 18272641 -184055706 + L3 LINE CR1 1064 1254 -323 2371 136 52 0 chr4 18273401 18273747 -184054600 - THE1B LTR MaLR 0 364 1 302 183 14 0 chr4 18274384 18274455 -184053892 + GA-rich Low_complexity Low_complexity 3 74 0 263 54 0 0 chr4 18274722 18274759 -184053588 + L1MA3 LINE L1 6269 6305 0 364 338 36 31 chr4 18275424 18275649 -184052698 + L1M4 LINE L1 2316 2541 -3605 4512 116 17 49 chr4 18275781 18276497 -184051850 - L1PA16 LINE L1 -9 6157 5465 462 271 106 85 chr4 18276585 18277057 -184051290 + L1M4 LINE L1 2811 3292 -2854 2208 97 3 3 chr4 18277057 18277345 -184051002 + AluSq SINE Alu 1 288 -25 649 237 143 18 chr4 18277452 18277676 -184050671 + MIR SINE MIR 11 262 0 227 292 78 70 chr4 18277700 18278083 -184050264 + L1M4 LINE L1 3386 3771 -2375 927 112 0 8 chr4 18278085 18278219 -184050128 - AluSq/x SINE Alu -179 133 1 343 297 76 63 chr4 18278261 18278594 -184049753 + L1M4 LINE L1 3826 4170 -1976 6540 34 3 0 chr4 18278594 18279328 -184049019 - L1PA4 LINE L1 0 6155 5420 343 297 76 63 chr4 18279328 18279549 -184048798 + L1M4 LINE L1 4170 4387 -1759 259 288 72 36 chr4 18279557 18279696 -184048651 - LTR67 LTR ERVL -21 536 393 1062 164 169 0 chr4 18279709 18279928 -184048419 + MSTB1-int LTR MaLR 1396 1651 0 1499 199 28 71 chr4 18279928 18280142 -184048205 + MSTB1 LTR MaLR 1 192 -240 2331 74 3 3 chr4 18280142 18280438 -184047909 + AluY SINE Alu 1 296 -15 1499 199 28 71 chr4 18280438 18280616 -184047731 + MSTB1 LTR MaLR 192 376 -56 1803 159 0 32 chr4 18280620 18280935 -184047412 - AluJb SINE Alu -7 305 1 323 248 60 130 chr4 18280958 18281017 -184047330 + L1MC4a LINE L1 5604 5666 -2142 1450 119 29 65 chr4 18281017 18281294 -184047053 + L1MA8 LINE L1 6020 6286 -5 323 248 60 130 chr4 18281294 18281375 -184046972 + L1MC4a LINE L1 5666 5751 -2057 1532 253 137 18 chr4 18281375 18281866 -184046481 - MLT1H LTR MaLR 0 549 1 323 248 60 130 chr4 18281866 18282023 -184046324 + L1MC4a LINE L1 5751 5881 -1927 2497 108 114 8 chr4 18282114 18282501 -184045846 - MSTA LTR MaLR 0 428 1 242 343 0 0 chr4 18282572 18282639 -184045708 - L2 LINE L2 -559 2755 2689 640 300 21 34 chr4 18282664 18282901 -184045446 - MIR SINE MIR 0 262 29 1582 156 102 25 chr4 18283093 18283376 -184044971 + AluSx SINE Alu 1 305 -7 283 280 102 0 chr4 18283682 18283800 -184044547 + MIR SINE MIR 77 206 -56 2798 107 3 3 chr4 18283808 18284172 -184044175 - THE1B LTR MaLR 0 364 1 190 393 98 9 chr4 18284649 18284761 -184043586 + MIR SINE MIR 1 122 -140 1867 203 61 16 chr4 18284767 18285146 -184043201 + MSTD LTR MaLR 1 396 0 282 366 28 7 chr4 18285155 18285297 -184043050 - LTR16A LTR ERVL -18 432 288 2212 115 0 34 chr4 18285481 18285802 -184042545 + AluSx SINE Alu 2 311 -1 320 342 26 0 chr4 18286060 18286174 -184042173 + L2 LINE L2 3192 3308 -5 7024 73 28 2 chr4 18286281 18287566 -184040781 - L1PA11 LINE L1 0 6174 4885 2006 157 44 49 chr4 18287729 18288117 -184040230 + MLT1B LTR MaLR 5 390 0 1242 185 73 31 chr4 18288119 18288378 -184039969 + AluJo SINE Alu 1 270 -42 201 108 0 0 chr4 18288378 18288415 -184039932 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 303 196 41 10 chr4 18288419 18288516 -184039831 + GA-rich Low_complexity Low_complexity 1 100 0 1859 94 90 0 chr4 18288519 18288775 -184039572 + AluSq SINE Alu 1 279 -34 901 54 0 23 chr4 18288778 18288908 -184039439 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 402 182 17 45 chr4 18288916 18289092 -184039255 + GA-rich Low_complexity Low_complexity 2 172 0 2142 130 0 0 chr4 18289092 18289384 -184038963 + AluSc SINE Alu 1 292 -17 213 121 0 0 chr4 18289384 18289417 -184038930 + (AGGGGG)n Simple_repeat Simple_repeat 2 34 0 255 61 0 0 chr4 18289769 18289802 -184038545 + (CA)n Simple_repeat Simple_repeat 1 33 0 192 232 63 63 chr4 18290018 18290113 -184038234 - L2 LINE L2 -22 3291 3197 2549 73 3 6 chr4 18290924 18291238 -184037109 + AluSp SINE Alu 1 313 0 21 57 0 0 chr4 18291475 18291510 -184036837 + AT_rich Low_complexity Low_complexity 1 35 0 224 224 0 0 chr4 18291889 18291938 -184036409 + T-rich Low_complexity Low_complexity 2 50 0 290 171 0 13 chr4 18292615 18292691 -184035656 + (ATG)n Simple_repeat Simple_repeat 1 75 0 1140 189 166 2 chr4 18294465 18294765 -184033582 - MSTB LTR MaLR -3 423 1 2116 137 0 7 chr4 18295259 18295559 -184032788 + AluJb SINE Alu 1 298 -14 3061 148 46 15 chr4 18295677 18296218 -184032129 - L1MB3 LINE L1 -6 6177 5620 2100 204 25 45 chr4 18297049 18297564 -184030783 - MLT1D LTR MaLR 0 505 1 374 174 79 85 chr4 18297606 18297742 -184030605 - Charlie8 DNA MER1_type -2268 149 2 828 309 36 0 chr4 18297989 18298241 -184030106 - MIR SINE MIR 0 262 2 2024 94 11 7 chr4 18298577 18298852 -184029495 + AluSx SINE Alu 1 276 -36 7075 52 10 16 chr4 18298854 18299860 -184028487 + L1PA7 LINE L1 5155 6154 0 222 186 47 0 chr4 18300317 18300360 -184027987 + GA-rich Low_complexity Low_complexity 3 47 0 1452 201 3 31 chr4 18300480 18300768 -184027579 + AluJo SINE Alu 5 284 -28 401 101 56 11 chr4 18301262 18301351 -184026996 + GA-rich Low_complexity Low_complexity 3 95 0 347 237 11 11 chr4 18301633 18301726 -184026621 + MLT1I LTR MaLR 317 409 0 21 0 0 0 chr4 18301767 18301788 -184026559 + AT_rich Low_complexity Low_complexity 1 21 0 2154 128 7 0 chr4 18301857 18302154 -184026193 + AluSx SINE Alu 2 300 -12 328 296 82 76 chr4 18302711 18303015 -184025332 + MLT1K LTR MaLR 131 436 -152 258 269 154 19 chr4 18304954 18305058 -184023289 + MIR3 SINE MIR 43 160 -48 4099 218 72 47 chr4 18305967 18307677 -184020670 + L1MB3 LINE L1 4969 6635 452 3623 165 51 56 chr4 18307677 18308466 -184019881 - LTR1 LTR ERV1 0 785 1 186 43 0 0 chr4 18308471 18308494 -184019853 + (CATA)n Simple_repeat Simple_repeat 2 24 0 4099 218 72 47 chr4 18308494 18308892 -184019455 + L1MB3 LINE L1 5794 6181 -2 1803 184 119 19 chr4 18308892 18309311 -184019036 + LOR1b LTR ERV1 1 461 0 371 266 44 9 chr4 18309324 18309437 -184018910 + L1MC4 LINE L1 7240 7356 -686 2996 152 170 48 chr4 18309440 18310470 -184017877 - pTR5 LTR ERV1 0 2438 1143 4300 168 126 55 chr4 18310620 18311926 -184016421 - pTR5 LTR ERV1 -236 2018 36 1511 246 118 4 chr4 18311926 18312410 -184015937 + L1MC4 LINE L1 7355 7893 -149 29 28 0 0 chr4 18312455 18312491 -184015856 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr4 18312700 18312724 -184015623 + AT_rich Low_complexity Low_complexity 1 24 0 582 292 88 76 chr4 18312836 18313281 -184015066 - L1MEd LINE L1 -4921 1198 749 456 280 40 30 chr4 18313937 18314159 -184014188 - MIR SINE MIR -28 234 14 378 250 143 25 chr4 18315540 18315736 -184012611 - MIR SINE MIR -15 247 29 296 231 164 10 chr4 18316464 18316568 -184011779 - MER117 DNA MER1_type -74 123 4 706 257 11 11 chr4 18316583 18316758 -184011589 - MER5B DNA MER1_type -3 175 1 220 283 66 38 chr4 18317205 18317311 -184011036 + MIR SINE MIR 98 206 -56 490 217 25 57 chr4 18317559 18317716 -184010631 - L1ME3 LINE L1 -96 6066 5915 200 191 0 0 chr4 18318220 18318262 -184010085 + MIR SINE MIR 81 122 -140 578 221 80 49 chr4 18318383 18318609 -184009738 + MIR SINE MIR 30 262 0 227 330 96 0 chr4 18318779 18318894 -184009453 + L2 LINE L2 3138 3263 -9 275 299 0 0 chr4 18318994 18319061 -184009286 - L2 LINE L2 -233 3039 2973 1811 141 113 3 chr4 18319295 18319622 -184008725 - MER47A DNA MER2_type -2 364 2 827 150 0 8 chr4 18319948 18320081 -184008266 + MER3 DNA MER1_type 1 132 -77 1892 148 137 6 chr4 18320115 18320459 -184007888 - MSTA LTR MaLR 0 428 40 1654 100 12 16 chr4 18320465 18320714 -184007633 + MSTA-int LTR MaLR 1333 1580 0 2047 131 141 24 chr4 18320714 18321060 -184007287 + MSTA LTR MaLR 1 398 -30 2142 106 3 7 chr4 18321060 18321371 -184006976 - AluSx SINE Alu 0 310 1 2047 131 141 24 chr4 18321371 18321406 -184006941 + MSTA LTR MaLR 398 428 0 1203 243 73 24 chr4 18321417 18321953 -184006394 - HsTC2 DNA Tc2 -122 1776 5 862 272 34 13 chr4 18322564 18322799 -184005548 + MIR SINE MIR 2 241 -21 1682 173 23 20 chr4 18324230 18324530 -184003817 - AluJo SINE Alu -11 301 1 2002 106 3 31 chr4 18326071 18326364 -184001983 + AluY SINE Alu 1 285 -26 2070 131 0 0 chr4 18326605 18326924 -184001423 - AluSx SINE Alu 0 319 1 413 285 23 23 chr4 18327760 18327890 -184000457 + MLT1K LTR MaLR 142 271 -317 1129 84 0 0 chr4 18327893 18328035 -184000312 - AluSg/x SINE Alu -12 300 159 6999 166 23 14 chr4 18328219 18328802 -183999545 + L1PB3 LINE L1 3819 4395 -1759 2359 94 0 0 chr4 18328802 18329090 -183999257 + AluSc SINE Alu 1 288 -21 6999 166 23 14 chr4 18329090 18330817 -183997530 + L1PB3 LINE L1 4395 6152 -2 231 133 0 0 chr4 18330923 18330968 -183997379 + (A)n Simple_repeat Simple_repeat 1 45 0 1204 162 26 13 chr4 18330990 18331224 -183997123 - MSTD LTR MaLR -159 237 1 257 262 244 18 chr4 18331882 18332046 -183996301 - L2 LINE L2 0 3313 3113 1802 141 61 7 chr4 18332428 18332725 -183995622 - LTR1 LTR ERV1 0 785 473 3644 119 38 144 chr4 18332727 18334152 -183994195 - LTR12 LTR ERV1 -23 1641 6 1137 248 52 16 chr4 18334152 18334489 -183993858 - LTR1 LTR ERV1 -293 533 189 * 1397 151 15 19 chr4 18334479 18334738 -183993609 - LTR1 LTR ERV1 -527 258 1 359 239 28 9 chr4 18335056 18335165 -183993182 + MER103 DNA DNA 36 146 -20 2374 91 0 3 chr4 18335165 18335463 -183992884 - AluSg SINE Alu -13 297 1 510 276 106 68 chr4 18335565 18335829 -183992518 + MLT1I LTR MaLR 121 394 -15 2243 197 108 86 chr4 18335830 18335911 -183992436 + Charlie1a DNA MER1_type 3 81 -2680 1911 135 0 55 chr4 18335911 18336223 -183992124 - AluSx SINE Alu -17 295 1 2243 197 108 86 chr4 18336223 18336309 -183992038 + Charlie1a DNA MER1_type 81 164 -2597 2473 148 33 7 chr4 18336309 18336729 -183991618 - MSTB1 LTR MaLR -1 431 1 2243 197 108 86 chr4 18336729 18336841 -183991506 + Charlie1a DNA MER1_type 164 272 -2489 1602 186 31 7 chr4 18336841 18337132 -183991215 + AluJo SINE Alu 2 299 -13 2243 197 108 86 chr4 18337132 18337602 -183990745 + Charlie1a DNA MER1_type 272 770 -685 2116 133 3 22 chr4 18337602 18337919 -183990428 + AluSx SINE Alu 1 311 -1 6075 208 9 22 chr4 18337925 18339313 -183989034 + L1 LINE L1 3957 5326 -820 1097 174 0 112 chr4 18339313 18339554 -183988793 + AluJb SINE Alu 80 293 -19 4214 113 26 6 chr4 18339555 18340199 -183988148 + L1PA16 LINE L1 5321 5977 -189 2311 125 16 21 chr4 18340199 18340576 -183987771 - THE1C LTR MaLR 0 375 1 1148 159 13 29 chr4 18340576 18340815 -183987532 - THE1C-int LTR MaLR 0 1580 1346 2203 136 39 8 chr4 18340922 18341283 -183987064 + L1PA16 LINE L1 5606 5977 -189 2355 119 16 24 chr4 18341283 18341661 -183986686 - THE1C LTR MaLR 0 375 1 10576 112 12 36 chr4 18341661 18343280 -183985067 - THE1C-int LTR MaLR 0 1580 1 1519 134 17 13 chr4 18343280 18343519 -183984828 - THE1C LTR MaLR 0 375 136 2297 96 0 0 chr4 18343553 18343867 -183984480 + AluSx SINE Alu 1 314 0 795 175 66 18 chr4 18344018 18344184 -183984163 - LTR41 LTR ERVL -599 174 1 1849 119 0 95 chr4 18344262 18344589 -183983758 - AluY SINE Alu -15 296 1 299 223 116 27 chr4 18345220 18345332 -183983015 + L2 LINE L2 3141 3262 -10 359 272 24 39 chr4 18345770 18345958 -183982389 - MLT1I LTR MaLR -3 406 266 299 208 26 26 chr4 18346036 18346113 -183982234 - MLT1J1 LTR MaLR -339 107 31 1287 189 6 102 chr4 18346158 18346492 -183981855 - AluJo SINE Alu -10 302 1 2464 141 18 2 chr4 18346943 18347340 -183981007 - MER57A LTR ERV1 0 403 1 21 0 0 0 chr4 18347354 18347375 -183980972 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 18347516 18347546 -183980801 + AT_rich Low_complexity Low_complexity 1 30 0 277 338 45 13 chr4 18347560 18347714 -183980633 - MIR SINE MIR -67 195 37 955 295 36 29 chr4 18348114 18348531 -183979816 + Tigger8 DNA MER2_type 245 664 -2 371 253 35 0 chr4 18348558 18348645 -183979702 + L2 LINE L2 3183 3272 0 1331 199 4 19 chr4 18348752 18349023 -183979324 + MLT2B1 LTR ERVL 1 267 -253 759 138 22 14 chr4 18349070 18349208 -183979139 - L1MA5A LINE L1 -3 6294 6156 953 204 144 82 chr4 18349281 18349781 -183978566 - LTR1B LTR ERV1 -237 589 59 4830 106 35 7 chr4 18349801 18350537 -183977810 - L1MA5A LINE L1 -130 6167 5411 2492 92 0 9 chr4 18350537 18350864 -183977483 + THE1B LTR MaLR 1 324 -40 1882 125 6 61 chr4 18350864 18351191 -183977156 + AluSp SINE Alu 1 309 -4 1272 100 24 0 chr4 18351191 18351361 -183976986 + AluSc SINE Alu 132 305 -4 479 96 55 0 chr4 18351361 18351434 -183976913 - L1MA5A LINE L1 -925 5221 5145 825 211 0 69 chr4 18351470 18351688 -183976659 + MLT2B1 LTR ERVL 318 520 0 283 304 24 48 chr4 18351698 18351866 -183976481 + L1MEd LINE L1 299 462 -5954 15507 118 40 9 chr4 18352057 18352988 -183975359 + Tigger1 DNA MER2_type 2 903 -1515 1754 47 0 0 chr4 18352988 18353202 -183975145 - L1PA6 LINE L1 0 6154 5941 15507 118 40 9 chr4 18353202 18354615 -183973732 + Tigger1 DNA MER2_type 903 2417 -1 21 0 0 0 chr4 18355429 18355450 -183972897 + AT_rich Low_complexity Low_complexity 1 21 0 369 209 65 86 chr4 18355521 18355650 -183972697 - L1ME3A LINE L1 0 6162 6038 450 220 88 55 chr4 18355789 18355971 -183972376 - MIR SINE MIR -73 189 2 1664 179 19 56 chr4 18356025 18356400 -183971947 + MLT1A1 LTR MaLR 1 361 -4 3621 163 20 99 chr4 18356400 18357284 -183971063 - LTR1B LTR ERV1 0 826 13 223 184 58 0 chr4 18357336 18357423 -183970924 + (TA)n Simple_repeat Simple_repeat 1 92 0 397 226 34 68 chr4 18357496 18357673 -183970674 + (TA)n Simple_repeat Simple_repeat 1 171 0 391 249 45 34 chr4 18357720 18357897 -183970450 + (TA)n Simple_repeat Simple_repeat 2 180 0 230 192 0 19 chr4 18357973 18358025 -183970322 + L1MEd LINE L1 2013 2063 -4363 324 194 62 0 chr4 18358040 18358184 -183970163 + (TA)n Simple_repeat Simple_repeat 1 153 0 23 0 0 0 chr4 18358191 18358214 -183970133 + AT_rich Low_complexity Low_complexity 1 23 0 458 216 60 0 chr4 18358224 18358358 -183969989 - MIR SINE MIR -49 213 72 4740 102 16 34 chr4 18358723 18359165 -183969182 - LTR8 LTR ERV1 0 691 265 1829 125 25 69 chr4 18359165 18359484 -183968863 - AluSx SINE Alu -7 305 1 4740 102 16 34 chr4 18359484 18359744 -183968603 - LTR8 LTR ERV1 -426 265 2 545 294 47 19 chr4 18359771 18359985 -183968362 - MIR SINE MIR -15 247 28 208 267 0 0 chr4 18361025 18361070 -183967277 + L2 LINE L2 3251 3295 -18 2419 103 0 0 chr4 18361095 18361397 -183966950 + AluSq SINE Alu 1 302 -11 209 148 0 111 chr4 18361530 18361584 -183966763 - L2 LINE L2 -1 3271 3224 279 146 125 0 chr4 18361620 18361668 -183966679 - MER103 DNA DNA -46 120 67 470 17 17 0 chr4 18361687 18361746 -183966601 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 2433 150 49 28 chr4 18361886 18362359 -183965988 + MER67A LTR ERV1 1 483 -60 1288 213 23 11 chr4 18362359 18362622 -183965725 + Tigger7 DNA MER2_type 2 267 -2220 571 148 10 50 chr4 18362620 18362638 -183965709 + Tigger7 DNA MER2_type 2491 2508 -79 * 2372 88 59 34 chr4 18362638 18362992 -183965355 + THE1B LTR MaLR 1 363 -1 571 148 10 50 chr4 18362992 18363074 -183965273 + Tigger7 DNA MER2_type 2508 2587 0 388 154 0 0 chr4 18363074 18363137 -183965210 + MER67A LTR ERV1 481 543 0 1930 150 31 3 chr4 18363584 18363877 -183964470 + AluJo SINE Alu 1 301 -11 1855 115 100 0 chr4 18363885 18364154 -183964193 + AluSx SINE Alu 1 296 -16 252 0 0 0 chr4 18364200 18364228 -183964119 + (CA)n Simple_repeat Simple_repeat 1 28 0 1295 162 25 26 chr4 18364697 18365036 -183963311 + MLT1D LTR MaLR 12 395 -110 2197 119 0 16 chr4 18365036 18365346 -183963001 - AluSx SINE Alu -7 305 1 1295 162 25 26 chr4 18365346 18365457 -183962890 + MLT1D LTR MaLR 395 505 0 334 322 27 7 chr4 18366292 18366438 -183961909 + MIR SINE MIR 103 251 -11 576 101 0 0 chr4 18366673 18366752 -183961595 + MADE1 DNA Mariner 1 79 -1 315 0 0 0 chr4 18367045 18367080 -183961267 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 533 248 8 103 chr4 18367286 18367386 -183960961 + MIR SINE MIR 13 80 -182 2325 107 3 7 chr4 18367386 18367695 -183960652 + AluSx SINE Alu 1 308 -4 533 248 8 103 chr4 18367695 18367828 -183960519 + MIR SINE MIR 80 224 -38 2675 20 7 0 chr4 18367887 18368193 -183960154 - L1PA4 LINE L1 0 6155 5848 366 298 43 80 chr4 18368372 18368523 -183959824 - LTR16C LTR ERVL -5 486 331 549 115 0 0 chr4 18368523 18368601 -183959746 + MADE1 DNA Mariner 1 78 -2 366 298 43 80 chr4 18368601 18368798 -183959549 - LTR16C LTR ERVL -160 331 151 1261 150 68 13 chr4 18370122 18370356 -183957991 + MLT1F LTR MaLR 296 542 0 200 308 64 0 chr4 18370357 18370435 -183957912 + MER5A DNA MER1_type 78 160 -29 2649 42 0 7 chr4 18370955 18371261 -183957086 + AluY SINE Alu 1 304 -7 1961 163 10 0 chr4 18371348 18371648 -183956699 + AluJb SINE Alu 5 307 -5 365 264 157 0 chr4 18372273 18372432 -183955915 - MIR SINE MIR -10 252 69 189 256 0 85 chr4 18372415 18372497 -183955850 - L2 LINE L2 -16 3256 3182 * 1781 156 7 7 chr4 18372501 18372790 -183955557 + AluSx SINE Alu 1 289 -23 1560 163 97 0 chr4 18372883 18373169 -183955178 - AluJb SINE Alu 0 311 1 598 249 153 5 chr4 18373334 18373543 -183954804 + MIR SINE MIR 4 243 -19 378 286 168 30 chr4 18373743 18374113 -183954234 - L1ME LINE L1 -316 5805 5385 2369 91 13 0 chr4 18374317 18374625 -183953722 + AluSx SINE Alu 1 312 0 275 161 18 0 chr4 18374638 18374694 -183953653 + A-rich Low_complexity Low_complexity 4 60 0 874 257 122 27 chr4 18375439 18375913 -183952434 - LTR33A LTR ERVL -3 520 2 2767 70 3 17 chr4 18376735 18377093 -183951254 - THE1A LTR MaLR 0 355 3 1643 143 57 8 chr4 18377093 18377358 -183950989 - AluJb SINE Alu -34 278 1 270 261 122 17 chr4 18377420 18377535 -183950812 + MIR SINE MIR 40 166 -96 1205 155 73 0 chr4 18377591 18377925 -183950422 + L1MB8 LINE L1 5138 5489 -695 1574 207 18 18 chr4 18378117 18378451 -183949896 + L1MB8 LINE L1 5508 5841 -337 382 298 187 0 chr4 18378512 18378710 -183949637 - MIR SINE MIR 0 262 28 920 243 60 13 chr4 18379189 18379489 -183948858 + L2 LINE L2 1785 2098 -1216 716 193 94 12 chr4 18379545 18379716 -183948631 + LTR41 LTR ERVL 3 187 -586 309 223 54 27 chr4 18380003 18380115 -183948232 + LTR41 LTR ERVL 649 763 -10 1269 214 182 27 chr4 18380121 18380677 -183947670 + L2 LINE L2 2169 2810 -504 306 256 90 0 chr4 18380679 18380757 -183947590 + MER119 DNA MER1_type 3 87 -496 543 233 15 23 chr4 18380780 18380913 -183947434 + MER119 DNA MER1_type 451 582 -1 909 256 27 72 chr4 18380924 18381161 -183947186 + L2 LINE L2 2824 3027 -286 1345 225 48 61 chr4 18381161 18381556 -183946791 - MLT1B LTR MaLR 0 390 1 909 256 27 72 chr4 18381556 18381830 -183946517 + L2 LINE L2 3027 3312 -1 29 0 0 0 chr4 18381978 18382007 -183946340 + AT_rich Low_complexity Low_complexity 1 29 0 2291 82 0 7 chr4 18382133 18382424 -183945923 + AluSc SINE Alu 1 289 -20 292 325 70 0 chr4 18382636 18382750 -183945597 + MIR3 SINE MIR 45 166 -42 2595 168 40 72 chr4 18382772 18382793 -183945554 + L1MB5 LINE L1 5588 5608 -566 2025 121 0 66 chr4 18382793 18383125 -183945222 + AluSx SINE Alu 1 310 -2 2595 168 40 72 chr4 18383125 18383442 -183944905 + L1MB5 LINE L1 5608 5934 -240 1775 161 18 3 chr4 18383442 18383727 -183944620 + AluJo SINE Alu 1 289 -23 2595 168 40 72 chr4 18383727 18383966 -183944381 + L1MB5 LINE L1 5934 6148 -26 2557 60 0 7 chr4 18383966 18384267 -183944080 + AluY SINE Alu 1 299 -12 2595 168 40 72 chr4 18384267 18384294 -183944053 + L1MB5 LINE L1 6148 6174 0 388 224 131 0 chr4 18384335 18384442 -183943905 + MIR3 SINE MIR 39 159 -49 1984 121 36 0 chr4 18385537 18385840 -183942507 + AluSx SINE Alu 1 313 0 744 203 0 0 chr4 18385850 18385983 -183942364 + FLAM_C SINE Alu 1 133 0 265 250 14 0 chr4 18386054 18386126 -183942221 + HAL1b LINE L1 1248 1320 -28 1935 136 14 7 chr4 18386150 18386444 -183941903 + AluJb SINE Alu 1 296 -16 645 96 0 0 chr4 18387164 18387258 -183941089 - L1PA6 LINE L1 -1 6153 6060 560 270 104 14 chr4 18387690 18387912 -183940435 + MIR SINE MIR 8 249 -13 251 278 44 0 chr4 18388093 18388183 -183940164 + L2 LINE L2 3202 3295 -18 320 284 154 18 chr4 18388445 18388614 -183939733 - MIR SINE MIR -15 247 56 255 350 32 0 chr4 18389476 18389633 -183938714 - L3 LINE CR1 -1 1576 1415 206 217 33 17 chr4 18389794 18389854 -183938493 + GA-rich Low_complexity Low_complexity 2 62 0 1593 215 73 0 chr4 18389915 18390255 -183938092 + MLT1A1 LTR MaLR 1 365 0 350 285 21 24 chr4 18391126 18391267 -183937080 + MIR SINE MIR 22 169 -39 1411 175 36 12 chr4 18391330 18391582 -183936765 + AluJo SINE Alu 1 258 -54 1286 255 64 9 chr4 18391584 18392074 -183936273 - MER21B LTR ERV1 -199 664 98 425 260 58 23 chr4 18392200 18392373 -183935974 + MIR SINE MIR 31 209 -53 307 229 0 0 chr4 18393804 18393865 -183934482 + L2 LINE L2 3193 3253 -60 1958 140 0 7 chr4 18393896 18394189 -183934158 + AluJb SINE Alu 1 291 -21 261 0 0 0 chr4 18394192 18394221 -183934126 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2263 107 13 0 chr4 18394333 18394642 -183933705 + AluSp SINE Alu 1 313 0 760 149 16 0 chr4 18394807 18394928 -183933419 - AluJb SINE Alu -12 300 178 2069 103 31 3 chr4 18394928 18395218 -183933129 - AluSx SINE Alu -14 298 1 21 0 0 0 chr4 18395452 18395473 -183932874 + AT_rich Low_complexity Low_complexity 1 21 0 268 320 40 0 chr4 18395665 18395765 -183932582 + MIR SINE MIR 66 169 -93 289 273 10 20 chr4 18395845 18395944 -183932403 - L1MA10 LINE L1 0 6334 6237 476 225 73 33 chr4 18397207 18397358 -183930989 - MIR SINE MIR -94 168 12 1734 169 35 0 chr4 18397699 18397983 -183930364 + AluJo SINE Alu 1 294 -18 1956 82 112 4 chr4 18398046 18398315 -183930032 - AluY SINE Alu -13 298 1 2034 151 74 3 chr4 18398437 18398801 -183929546 + MLT1B LTR MaLR 1 390 0 288 263 171 10 chr4 18398862 18399015 -183929332 + MIR SINE MIR 51 224 -38 218 267 137 56 chr4 18399055 18399216 -183929131 - MIR SINE MIR -12 250 77 886 104 15 22 chr4 18399249 18399383 -183928964 - FLAM_C SINE Alu -10 133 1 928 248 75 119 chr4 18400764 18401719 -183926628 + L1MC4 LINE L1 7130 8042 0 2206 100 3 3 chr4 18401730 18402020 -183926327 + AluSx SINE Alu 1 290 -22 213 132 0 0 chr4 18402020 18402058 -183926289 + (GGGGA)n Simple_repeat Simple_repeat 1 38 0 302 276 102 0 chr4 18402824 18402922 -183925425 - L1ME4a LINE L1 -49 6072 5965 2291 101 7 0 chr4 18403302 18403608 -183924739 - AluSq SINE Alu -5 308 1 824 136 0 0 chr4 18403631 18403749 -183924598 + FLAM_C SINE Alu 1 118 -15 1924 167 0 3 chr4 18404180 18404492 -183923855 - AluJb SINE Alu -1 311 1 647 302 13 4 chr4 18404540 18404765 -183923582 + MIR SINE MIR 2 228 -34 303 230 87 40 chr4 18404985 18405111 -183923236 + L1ME4a LINE L1 5938 6069 -52 547 220 8 0 chr4 18405470 18405588 -183922759 + FLAM_A SINE Alu 1 119 -14 2467 91 0 3 chr4 18405654 18405963 -183922384 - AluSc SINE Alu -1 308 1 534 236 153 51 chr4 18406172 18406216 -183922131 + L1ME4a LINE L1 5626 5664 -457 1873 164 7 7 chr4 18406216 18406509 -183921838 + AluSx SINE Alu 1 293 -19 534 236 153 51 chr4 18406509 18406914 -183921433 + L1ME4a LINE L1 5664 6121 0 2263 110 0 3 chr4 18406938 18407246 -183921101 + AluSg SINE Alu 1 307 -3 1680 163 57 20 chr4 18407506 18407807 -183920540 + AluJo SINE Alu 1 312 0 1419 206 57 0 chr4 18407952 18408253 -183920094 - MER58B DNA MER1_type 0 341 24 192 154 31 138 chr4 18408271 18408336 -183920011 + MIR SINE MIR 16 73 -135 784 108 47 0 chr4 18409002 18409131 -183919216 + L1PB4 LINE L1 6015 6149 -7 267 338 159 5 chr4 18409481 18409682 -183918665 - MIR SINE MIR -2 260 29 25 0 0 0 chr4 18410165 18410190 -183918157 + GC_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr4 18410208 18410240 -183918107 + GC_rich Low_complexity Low_complexity 1 32 0 273 132 0 19 chr4 18410617 18410670 -183917677 - L1MA4 LINE L1 -226 6074 6023 838 243 19 9 chr4 18410769 18410983 -183917364 - MER20 DNA MER1_type 0 219 4 292 246 305 21 chr4 18411227 18411414 -183916933 - MIR SINE MIR -9 253 14 264 169 51 0 chr4 18411606 18411665 -183916682 - MIR SINE MIR -6 256 195 1031 176 64 21 chr4 18411914 18412102 -183916245 - AluJo SINE Alu -30 282 87 653 294 20 0 chr4 18413853 18414050 -183914297 - MIR SINE MIR -16 246 46 204 365 0 21 chr4 18414174 18414270 -183914077 + MIR SINE MIR 24 117 -145 246 256 117 88 chr4 18414806 18414896 -183913451 + L1MC4 LINE L1 7613 7710 -332 2033 202 116 19 chr4 18414896 18415481 -183912866 - LTR48B LTR ERV1 -2 642 1 246 256 117 88 chr4 18415481 18415527 -183912820 + L1MC4 LINE L1 7710 7753 -289 2428 103 0 0 chr4 18416540 18416851 -183911496 + AluSq SINE Alu 1 311 -2 216 152 22 22 chr4 18416973 18417019 -183911328 - MIR SINE MIR -110 152 107 335 221 0 14 chr4 18417496 18417580 -183910767 + MIR SINE MIR 67 149 -59 649 168 17 8 chr4 18417950 18418069 -183910278 - FLAM_C SINE Alu -13 120 1 22 0 0 0 chr4 18418089 18418111 -183910236 + AT_rich Low_complexity Low_complexity 1 22 0 310 239 82 60 chr4 18418194 18418318 -183910029 - HAL1 LINE L1 -203 2304 2181 501 274 164 34 chr4 18418318 18418701 -183909646 - L1MC4a LINE L1 -1927 5881 2117 1751 153 56 3 chr4 18418812 18419099 -183909248 + AluSx SINE Alu 1 302 -10 2712 164 39 2 chr4 18419619 18420076 -183908271 - MER101 LTR ERV1 0 474 1 295 206 16 0 chr4 18420282 18420345 -183908002 - MIR SINE MIR -109 153 90 1944 136 4 4 chr4 18421264 18421544 -183906803 - AluJb SINE Alu 0 312 33 555 292 87 9 chr4 18421988 18422207 -183906140 - MIR SINE MIR -13 249 14 288 0 0 0 chr4 18422266 18422298 -183906049 + (TG)n Simple_repeat Simple_repeat 1 32 0 1136 147 4 101 chr4 18422787 18423025 -183905322 + AluJb SINE Alu 87 301 -11 522 281 30 0 chr4 18423132 18423299 -183905048 + L1ME LINE L1 5611 5782 -339 2066 118 0 45 chr4 18423415 18423728 -183904619 + AluJb SINE Alu 1 299 -13 24 0 0 0 chr4 18423995 18424019 -183904328 + AT_rich Low_complexity Low_complexity 1 24 0 198 143 0 0 chr4 18424025 18424060 -183904287 + (GA)n Simple_repeat Simple_repeat 2 36 0 2235 117 0 0 chr4 18424339 18424639 -183903708 + AluSx SINE Alu 1 300 -12 449 211 31 77 chr4 18425341 18425493 -183902854 + MIR SINE MIR 46 193 -63 304 149 90 0 chr4 18425716 18425783 -183902564 - MIR SINE MIR -3 259 187 310 26 0 0 chr4 18425789 18425827 -183902520 - MADE1 DNA Mariner -42 38 1 243 203 0 101 chr4 18425909 18425988 -183902359 - L2 LINE L2 -245 3027 2957 2383 100 0 0 chr4 18426035 18426334 -183902013 + AluSg SINE Alu 1 299 -11 1800 190 37 32 chr4 18426447 18426813 -183901534 + MLT2D LTR ERVL 5 375 -39 372 22 0 0 chr4 18426813 18426858 -183901489 + (CA)n Simple_repeat Simple_repeat 2 46 0 1800 190 37 32 chr4 18426858 18426897 -183901450 + MLT2D LTR ERVL 375 412 -2 551 204 0 0 chr4 18426998 18427101 -183901246 + U13 snRNA snRNA 1 103 -1 2118 124 14 0 chr4 18427126 18427416 -183900931 - AluSq SINE Alu -19 294 1 292 300 121 49 chr4 18427610 18427833 -183900514 + L3 LINE CR1 684 922 -655 242 239 70 0 chr4 18427856 18427927 -183900420 - L2 LINE L2 -45 3268 3193 754 137 43 58 chr4 18427997 18428136 -183900211 + FLAM_C SINE Alu 4 140 -3 2303 96 10 0 chr4 18428215 18428508 -183899839 + AluSq SINE Alu 1 296 -17 2358 103 0 3 chr4 18428580 18428882 -183899465 - AluSx SINE Alu -11 301 1 3651 172 49 29 chr4 18429241 18429939 -183898408 + MER21B LTR ERV1 135 846 -17 275 308 175 0 chr4 18429970 18430113 -183898234 - MIR SINE MIR -30 232 65 2248 89 3 3 chr4 18430659 18430951 -183897396 + AluSq SINE Alu 2 293 -20 597 203 0 8 chr4 18431285 18431403 -183896944 - MLT1D LTR MaLR 0 505 389 829 198 46 9 chr4 18431403 18431706 -183896641 + MSTD LTR MaLR 1 396 0 1550 195 47 7 chr4 18431732 18432030 -183896317 + AluJo SINE Alu 1 310 -2 918 241 91 13 chr4 18432044 18432276 -183896071 - MLT1D LTR MaLR -125 380 131 2203 104 7 3 chr4 18432450 18432749 -183895598 + AluSc SINE Alu 1 300 -9 1956 134 0 31 chr4 18432936 18433295 -183895052 - AluSx SINE Alu 0 350 1 649 82 0 0 chr4 18433678 18433763 -183894584 - MER101 LTR ERV1 -2 472 388 267 118 0 0 chr4 18433859 18433893 -183894454 - MER101 LTR ERV1 -56 418 385 2999 113 14 49 chr4 18433894 18434383 -183893964 - MER101 LTR ERV1 0 474 3 190 350 0 0 chr4 18434417 18434497 -183893850 + MIR3 SINE MIR 122 201 -7 1949 106 84 0 chr4 18434999 18435273 -183893074 + AluSg SINE Alu 1 297 -13 823 81 0 57 chr4 18435423 18435546 -183892801 + FLAM_C SINE Alu 24 139 -4 2190 92 0 54 chr4 18436432 18436748 -183891599 + AluSg SINE Alu 1 299 -11 254 221 62 97 chr4 18437120 18437265 -183891082 + L2 LINE L2 3078 3217 -96 2388 84 14 0 chr4 18437266 18437563 -183890784 - AluSp SINE Alu -12 301 1 220 216 0 20 chr4 18437693 18437744 -183890603 + (TATG)n Simple_repeat Simple_repeat 2 51 0 3219 123 8 0 chr4 18437746 18438227 -183890120 - L1MC1 LINE L1 -421 5912 5428 464 181 0 0 chr4 18438533 18438616 -183889731 - L1MC/D LINE L1 -647 5686 5604 1700 143 11 29 chr4 18438639 18438919 -183889428 - MER1B DNA MER1_type -64 275 1 192 244 0 115 chr4 18439004 18439082 -183889265 - MIR SINE MIR -21 241 173 467 236 9 0 chr4 18439092 18439202 -183889145 - L1MC4 LINE L1 0 8042 7932 925 154 0 0 chr4 18439202 18439338 -183889009 + AluJo SINE Alu 1 136 -176 31 0 0 0 chr4 18439338 18439369 -183888978 + AT_rich Low_complexity Low_complexity 1 31 0 3767 219 69 31 chr4 18439428 18439828 -183888519 - L1MC4 LINE L1 -122 7920 7536 2587 43 3 0 chr4 18439828 18440129 -183888218 - AluY SINE Alu -9 302 1 3767 219 69 31 chr4 18440129 18440776 -183887571 - L1MC4 LINE L1 -506 7536 6834 1688 165 20 37 chr4 18441434 18441786 -183886561 - L1MB8 LINE L1 -1 6177 5832 2365 73 0 30 chr4 18441799 18442102 -183886245 - AluY SINE Alu -17 294 1 375 252 52 17 chr4 18442728 18442843 -183885504 - L1MC5 LINE L1 -60 7901 7783 244 256 26 26 chr4 18442942 18443020 -183885327 - L2 LINE L2 -9 3263 3186 2042 93 54 0 chr4 18443171 18443450 -183884897 + AluSp SINE Alu 1 294 -19 383 134 75 0 chr4 18444606 18444673 -183883674 + MLT1B LTR MaLR 19 90 -300 1057 99 13 0 chr4 18444674 18444826 -183883521 - AluSg/x SINE Alu -15 295 142 1139 194 12 70 chr4 18444838 18445028 -183883319 + MSTB LTR MaLR 91 290 -136 2031 104 4 4 chr4 18445028 18445308 -183883039 + AluSc SINE Alu 1 280 -29 221 0 35 0 chr4 18445311 18445340 -183883007 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1139 194 12 70 chr4 18445340 18445383 -183882964 + MSTB LTR MaLR 292 314 -112 2003 154 0 0 chr4 18445383 18445695 -183882652 - AluSx SINE Alu 0 312 1 1139 194 12 70 chr4 18445695 18445714 -183882633 + MSTB LTR MaLR 314 333 -93 604 142 7 20 chr4 18445727 18445837 -183882510 + MSTB1 LTR MaLR 249 432 0 1000 107 94 0 chr4 18445837 18445986 -183882361 + MLT1B LTR MaLR 228 390 0 247 235 15 44 chr4 18446163 18446231 -183882116 - L2 LINE L2 -990 2324 2259 229 154 0 0 chr4 18446283 18446322 -183882025 + MIR SINE MIR 110 148 -114 1610 146 0 0 chr4 18446324 18446577 -183881770 + AluSx SINE Alu 1 253 -59 43 0 0 0 chr4 18446694 18446737 -183881610 + AT_rich Low_complexity Low_complexity 1 43 0 198 258 0 76 chr4 18447383 18447449 -183880898 + MIR3 SINE MIR 148 208 0 2400 41 7 0 chr4 18447585 18447877 -183880470 + AluY SINE Alu 1 294 -17 1922 151 3 0 chr4 18448057 18448368 -183879979 - AluJb SINE Alu 0 312 1 232 241 0 19 chr4 18448616 18448670 -183879677 + MER5B DNA MER1_type 1 53 -125 2198 106 0 0 chr4 18449188 18449524 -183878823 + AluSc SINE Alu 3 338 0 502 145 0 24 chr4 18449617 18449700 -183878647 - AluJo SINE Alu -16 296 216 961 170 0 6 chr4 18449701 18449866 -183878481 - AluJo SINE Alu -148 164 1 2159 125 0 0 chr4 18450897 18451209 -183877138 + AluSx SINE Alu 1 312 0 1520 178 22 47 chr4 18451232 18451553 -183876794 + L1MD2 LINE L1 5595 5907 -452 843 104 0 0 chr4 18451553 18451668 -183876679 + AluSg/x SINE Alu 163 277 -35 953 231 64 8 chr4 18451671 18451905 -183876442 + L1MD2 LINE L1 5896 6142 -217 389 233 33 67 chr4 18451910 18452033 -183876314 + L1MD2 LINE L1 6199 6325 -34 216 97 0 0 chr4 18452033 18452064 -183876283 + (TA)n Simple_repeat Simple_repeat 1 31 0 2234 73 0 54 chr4 18452064 18452380 -183875967 - AluSg SINE Alu -11 299 1 389 233 33 67 chr4 18452380 18452405 -183875942 + L1MD2 LINE L1 6323 6343 -16 1928 142 13 10 chr4 18452459 18452770 -183875577 + AluSx SINE Alu 1 312 0 810 293 81 66 chr4 18452802 18453664 -183874683 + L2 LINE L2 2213 3271 -1 442 243 29 19 chr4 18453787 18453890 -183874457 + L2 LINE L2 3210 3313 0 1074 272 35 80 chr4 18454111 18454532 -183873815 + HAL1 LINE L1 427 813 -1694 814 133 16 85 chr4 18454532 18454720 -183873627 - L1PA16 LINE L1 0 6166 5992 1074 272 35 80 chr4 18454720 18454920 -183873427 + HAL1 LINE L1 813 1020 -1487 1961 123 3 10 chr4 18455035 18455337 -183873010 + AluSx SINE Alu 13 312 0 1630 192 0 19 chr4 18455447 18455755 -183872592 - AluJo SINE Alu -10 302 1 1073 127 66 28 chr4 18456169 18456381 -183871966 + L1PA15 LINE L1 5935 6154 -11 294 83 0 0 chr4 18457094 18457130 -183871217 - U2 snRNA snRNA -152 36 1 300 321 36 9 chr4 18457401 18457513 -183870834 + MIR SINE MIR 8 122 -140 576 324 25 12 chr4 18457523 18457764 -183870583 - MLT1J LTR MaLR -10 501 258 728 263 132 18 chr4 18457887 18458168 -183870179 - L2 LINE L2 -2 3311 2999 818 206 0 7 chr4 18458265 18458411 -183869936 - FRAM SINE Alu -31 145 1 290 142 113 142 chr4 18458483 18458589 -183869758 + MLT1J LTR MaLR 155 257 -254 2023 118 0 7 chr4 18458713 18459002 -183869345 + AluSx SINE Alu 13 299 -13 1976 123 7 0 chr4 18459048 18459348 -183868999 + AluSp SINE Alu 1 302 -11 760 239 0 0 chr4 18460077 18460236 -183868111 + MER70-int LTR ERVL 421 579 -4444 * 5102 238 41 21 chr4 18460232 18461629 -183866718 + MER70-int LTR ERVL 1808 3879 -1651 1060 122 0 0 chr4 18461632 18461780 -183866567 - AluSp SINE Alu -19 294 147 3695 211 27 23 chr4 18461782 18462101 -183866246 + MER70-int LTR ERVL 2842 3158 -1865 273 29 0 0 chr4 18462101 18462135 -183866212 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3695 211 27 23 chr4 18462135 18462603 -183865744 + MER70-int LTR ERVL 3158 3632 -1391 2102 116 0 3 chr4 18462874 18463177 -183865170 - AluSx SINE Alu -6 306 5 503 277 57 50 chr4 18464154 18464537 -183863810 + MER70-int LTR ERVL 4471 4856 -167 2791 129 21 46 chr4 18465194 18465673 -183862674 - LTR24 LTR ERV1 0 467 1 314 291 58 0 chr4 18465699 18465785 -183862562 + MLT1J LTR MaLR 323 413 -98 2481 55 3 0 chr4 18465823 18466131 -183862216 - AluY SINE Alu -2 309 1 2046 109 10 3 chr4 18466131 18466433 -183861914 - AluSx SINE Alu -8 304 1 1560 154 0 29 chr4 18466521 18466801 -183861546 + AluJb SINE Alu 1 272 -40 1294 92 0 6 chr4 18466801 18466974 -183861373 - AluSp SINE Alu -141 172 1 448 126 57 151 chr4 18467299 18467362 -183860985 - LTR37A LTR ERV1 0 426 359 1812 142 10 0 chr4 18467362 18467639 -183860708 + AluSx SINE Alu 3 285 -27 198 0 0 0 chr4 18467639 18467661 -183860686 + (CA)n Simple_repeat Simple_repeat 1 22 0 1812 142 10 0 chr4 18467661 18467678 -183860669 + AluSx SINE Alu 285 300 -12 448 126 57 151 chr4 18467678 18467773 -183860574 - LTR37A LTR ERV1 -67 359 283 841 135 0 43 chr4 18467785 18467887 -183860460 + AluJ SINE Alu 2 98 -214 3932 130 29 8 chr4 18467887 18468518 -183859829 - LTR9B LTR ERV1 0 644 1 841 135 0 43 chr4 18468518 18468556 -183859791 + AluJ SINE Alu 98 136 -176 1017 167 6 0 chr4 18468556 18468718 -183859629 + AluJ SINE Alu 137 299 -3 678 191 57 127 chr4 18468720 18468965 -183859382 - LTR37A LTR ERV1 -148 278 56 1578 169 43 0 chr4 18468965 18469087 -183859260 + AluJo SINE Alu 1 116 -196 201 74 0 0 chr4 18469087 18469114 -183859233 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1578 169 43 0 chr4 18469114 18469269 -183859078 + AluJo SINE Alu 116 290 -22 678 191 57 127 chr4 18469269 18469322 -183859025 - LTR37A LTR ERV1 -370 56 1 189 160 43 160 chr4 18469721 18469815 -183858532 - L2 LINE L2 -4 3268 3186 279 137 11 158 chr4 18469854 18469900 -183858447 + LTR8A LTR ERV1 1 28 -699 2061 97 3 16 chr4 18469900 18470211 -183858136 + AluSc SINE Alu 1 307 -2 279 137 11 158 chr4 18470211 18470259 -183858088 + LTR8A LTR ERV1 28 81 -646 198 0 0 0 chr4 18470279 18470301 -183858046 + (CTG)n Simple_repeat Simple_repeat 2 23 0 2131 105 0 16 chr4 18470301 18470479 -183857868 - AluSx SINE Alu -2 310 138 2317 71 0 16 chr4 18470479 18470789 -183857558 - AluY SINE Alu -5 306 2 2131 105 0 16 chr4 18470789 18470925 -183857422 - AluSx SINE Alu -174 138 1 1252 194 14 9 chr4 18470925 18471142 -183857205 + LTR8 LTR ERV1 474 691 0 190 277 64 21 chr4 18471180 18471274 -183857073 - L2 LINE L2 -181 3091 2994 1349 262 51 41 chr4 18471384 18471764 -183856583 + MER34 LTR ERV1 26 401 -141 261 0 0 0 chr4 18471764 18471793 -183856554 + (TG)n Simple_repeat Simple_repeat 2 30 0 1349 262 51 41 chr4 18471793 18471822 -183856525 + MER34 LTR ERV1 401 428 -114 1859 145 0 7 chr4 18471822 18472112 -183856235 - AluJb SINE Alu -24 288 1 1349 262 51 41 chr4 18472112 18472213 -183856134 + MER34 LTR ERV1 428 542 0 1447 178 31 21 chr4 18472997 18473283 -183855064 - AluJb SINE Alu -23 289 1 2038 114 10 0 chr4 18473390 18473689 -183854658 + AluSx SINE Alu 1 302 -10 24 0 0 0 chr4 18473721 18473745 -183854602 + AT_rich Low_complexity Low_complexity 1 24 0 3171 116 38 41 chr4 18473769 18474302 -183854045 + LTR26B LTR ERV1 1 531 0 1912 113 0 38 chr4 18474374 18474508 -183853839 + AluSg SINE Alu 1 139 -171 2118 98 0 22 chr4 18474508 18474825 -183853522 + AluSq SINE Alu 2 311 -2 1912 113 0 38 chr4 18474825 18475008 -183853339 + AluSg SINE Alu 139 306 -4 200 339 0 0 chr4 18475246 18475311 -183853036 + (CG)n Simple_repeat Simple_repeat 1 65 0 238 279 85 47 chr4 18476634 18476763 -183851584 + MIR SINE MIR 113 246 -16 2102 213 29 42 chr4 18477003 18477552 -183850795 - MER34 LTR ERV1 0 542 1 1593 141 3 71 chr4 18478055 18478381 -183849966 - AluSx SINE Alu -8 304 1 818 134 0 24 chr4 18479534 18479661 -183848686 + FLAM_C SINE Alu 17 140 -3 221 135 27 0 chr4 18481376 18481413 -183846934 - MIR SINE MIR -58 150 113 474 283 38 25 chr4 18482225 18482384 -183845963 + MIR SINE MIR 13 173 -89 393 348 28 0 chr4 18483214 18483355 -183844992 - MIR3 SINE MIR -3 205 61 1022 145 0 40 chr4 18483424 18483497 -183844850 - L1MB8 LINE L1 -3 6175 6101 1434 169 74 14 chr4 18483497 18483781 -183844566 - AluJo SINE Alu -1 301 1 1022 145 0 40 chr4 18483781 18483907 -183844440 - L1MB8 LINE L1 -77 6101 5984 444 140 33 0 chr4 18483928 18484028 -183844319 - L1MB8 LINE L1 -494 5680 5573 563 227 25 0 chr4 18484743 18484862 -183843485 + FLAM_A SINE Alu 5 126 -7 2018 125 0 0 chr4 18484885 18485174 -183843173 + AluSx SINE Alu 1 289 -23 1151 196 4 27 chr4 18486094 18486354 -183841993 - AluJb SINE Alu -16 296 43 810 148 16 0 chr4 18486383 18486505 -183841842 - FLAM_C SINE Alu -18 125 2 323 265 81 33 chr4 18486595 18486757 -183841590 - MIR SINE MIR -39 223 51 2102 139 0 0 chr4 18487112 18487422 -183840925 - AluSx SINE Alu -2 310 1 500 312 127 0 chr4 18487501 18487674 -183840673 - MIR SINE MIR -21 241 47 690 203 8 0 chr4 18487701 18487819 -183840528 - FLAM_C SINE Alu -23 120 2 210 295 62 27 chr4 18488393 18488505 -183839842 - L3 LINE CR1 -156 1421 1306 356 172 17 133 chr4 18488505 18488631 -183839716 - Charlie7 DNA MER1_type 0 2612 2512 2240 77 3 0 chr4 18488631 18488931 -183839416 - AluY SINE Alu -10 301 1 356 172 17 133 chr4 18488931 18488984 -183839363 - Charlie7 DNA MER1_type -100 2512 2454 951 118 0 15 chr4 18488995 18489130 -183839217 - AluJo/FLAM SINE Alu -169 133 1 1177 108 0 44 chr4 18489130 18489324 -183839023 - AluSg/x SINE Alu -8 304 118 * 1213 112 0 11 chr4 18489323 18489502 -183838845 - AluSg SINE Alu -133 177 1 407 324 53 27 chr4 18489639 18489960 -183838387 - L2 LINE L2 -219 3053 2721 360 171 71 0 chr4 18489961 18490031 -183838316 - L1ME1 LINE L1 -10 6156 6082 718 210 0 0 chr4 18490039 18490163 -183838184 + FLAM_A SINE Alu 4 127 -6 2832 217 73 31 chr4 18490208 18490875 -183837472 - L1ME1 LINE L1 -72 6094 5387 1964 106 39 0 chr4 18490875 18491159 -183837188 - AluSx SINE Alu -17 295 1 2832 217 73 31 chr4 18491159 18491288 -183837059 - L1ME1 LINE L1 -779 5387 5265 1210 217 99 56 chr4 18491282 18491671 -183836676 - L1ME1 LINE L1 -1094 5052 4640 * 2099 120 0 3 chr4 18491671 18491972 -183836375 - AluJb SINE Alu -10 302 3 1210 217 99 56 chr4 18491972 18492025 -183836322 - L1ME1 LINE L1 -1506 4640 4591 217 309 72 22 chr4 18492088 18492227 -183836120 - L2 LINE L2 -667 2647 2502 717 158 15 15 chr4 18493078 18493211 -183835136 + FLAM_C SINE Alu 1 133 0 1330 42 6 6 chr4 18493229 18493395 -183834952 - AluY SINE Alu -141 170 5 753 251 191 39 chr4 18494220 18494393 -183833954 - L1MC4 LINE L1 -140 7902 7757 2345 85 3 0 chr4 18494393 18494700 -183833647 - AluSp SINE Alu -5 308 1 753 251 191 39 chr4 18494700 18495009 -183833338 - L1MC4 LINE L1 -285 7757 7347 1500 196 27 3 chr4 18495334 18495630 -183832717 - AluJb SINE Alu -9 303 1 596 161 0 27 chr4 18496225 18496337 -183832010 - AluJb SINE Alu -178 134 26 1855 112 58 4 chr4 18496823 18497099 -183831248 - AluSx SINE Alu -21 291 1 826 113 14 56 chr4 18497099 18497241 -183831106 - AluSq/x SINE Alu -176 136 1 2048 111 4 0 chr4 18497318 18497621 -183830726 + AluSc SINE Alu 1 304 0 278 341 33 0 chr4 18497881 18497972 -183830375 + MIR SINE MIR 31 124 -138 362 289 67 30 chr4 18498914 18499049 -183829298 + MIR SINE MIR 113 252 -10 1708 127 11 4 chr4 18499631 18499891 -183828456 + MER2 DNA MER2_type 4 265 -80 340 128 0 0 chr4 18499967 18500014 -183828333 + MER2 DNA MER2_type 298 344 -1 214 257 159 35 chr4 18500274 18500387 -183827960 - L2 LINE L2 -9 3263 3137 2139 89 28 0 chr4 18500752 18501043 -183827304 - AluSx SINE Alu -13 299 1 2091 90 3 7 chr4 18501087 18501375 -183826972 + AluY SINE Alu 1 287 -24 1624 153 16 66 chr4 18501437 18501567 -183826780 + AluJo SINE Alu 1 136 -176 2177 75 7 36 chr4 18501567 18501875 -183826472 - AluSp SINE Alu -14 299 1 1995 86 76 3 chr4 18501876 18502167 -183826180 - AluSx SINE Alu 0 312 1 1624 153 16 66 chr4 18502167 18502354 -183825993 + AluJo SINE Alu 135 304 -8 279 0 0 0 chr4 18503180 18503211 -183825136 + (CA)n Simple_repeat Simple_repeat 1 31 0 239 196 0 0 chr4 18503560 18503606 -183824741 - L2 LINE L2 0 3313 3268 518 156 90 8 chr4 18503931 18504053 -183824294 - HAL1 LINE L1 -110 2397 2266 182 365 19 0 chr4 18504054 18504106 -183824241 + L2 LINE L2 3112 3164 -108 214 196 43 0 chr4 18504159 18504205 -183824142 + (TGAG)n Simple_repeat Simple_repeat 3 50 0 2017 83 7 10 chr4 18504385 18504699 -183823648 - AluSc SINE Alu 0 309 1 855 212 80 14 chr4 18506263 18506475 -183821872 - MIR SINE MIR 0 262 37 1132 156 12 131 chr4 18506569 18506890 -183821457 + AluJo SINE Alu 1 283 -19 2228 81 0 10 chr4 18506890 18507187 -183821160 + AluSg SINE Alu 1 294 -16 1461 152 13 56 chr4 18507212 18507337 -183821010 + AluJo SINE Alu 9 138 -174 2054 90 38 0 chr4 18507337 18507626 -183820721 + AluSx SINE Alu 1 300 -12 1461 152 13 56 chr4 18507626 18507803 -183820544 + AluJo SINE Alu 138 298 -14 1936 131 10 0 chr4 18508406 18508696 -183819651 - AluSx SINE Alu -19 293 1 1192 128 0 36 chr4 18508752 18508948 -183819399 + AluSg/x SINE Alu 106 294 -18 450 250 90 80 chr4 18509011 18509170 -183819177 + L2 LINE L2 2544 2707 -607 836 147 0 16 chr4 18509170 18509299 -183819048 + FLAM_C SINE Alu 1 127 -6 450 250 90 80 chr4 18509299 18509327 -183819020 + L2 LINE L2 2707 2733 -581 1629 171 32 0 chr4 18509568 18509849 -183818498 + AluJb SINE Alu 1 290 -22 1078 157 73 33 chr4 18509862 18510004 -183818343 + Charlie1 DNA MER1_type 2477 2612 -149 2160 92 7 0 chr4 18510004 18510297 -183818050 - AluY SINE Alu -16 295 1 1078 157 73 33 chr4 18510297 18510428 -183817919 + Charlie1 DNA MER1_type 2612 2761 0 386 229 52 143 chr4 18510463 18510694 -183817653 - L2 LINE L2 -1 3312 3103 480 299 256 11 chr4 18510769 18511144 -183817203 + L2 LINE L2 2830 3296 -17 1978 94 17 3 chr4 18511213 18511501 -183816846 + AluSx SINE Alu 1 292 -20 2481 38 0 0 chr4 18511554 18511846 -183816501 + AluY SINE Alu 2 293 -18 1056 207 114 4 chr4 18511852 18512123 -183816224 + AluJb SINE Alu 2 302 0 324 272 35 18 chr4 18512316 18512430 -183815917 - MIR SINE MIR -58 150 35 221 235 78 0 chr4 18512969 18513020 -183815327 - MIR SINE MIR -119 143 89 2268 73 0 13 chr4 18513592 18513905 -183814442 + AluSg SINE Alu 2 310 0 2040 82 18 4 chr4 18514037 18514316 -183814031 - AluSg SINE Alu -27 283 1 233 388 10 0 chr4 18514515 18514618 -183813729 + L2 LINE L2 2723 2826 -488 285 206 52 125 chr4 18514757 18514893 -183813454 + L2 LINE L2 3188 3313 0 417 341 16 0 chr4 18515502 18515631 -183812716 - MIR3 SINE MIR -28 180 50 1962 102 7 3 chr4 18515694 18515977 -183812370 + AluSx SINE Alu 9 292 -20 1813 160 16 0 chr4 18516061 18516368 -183811979 - AluJb SINE Alu 0 312 1 1813 102 0 77 chr4 18516588 18516901 -183811446 - AluY SINE Alu -22 289 1 486 276 138 40 chr4 18517345 18517642 -183810705 - L2 LINE L2 -3 3310 2985 25 0 0 0 chr4 18518285 18518310 -183810037 + AT_rich Low_complexity Low_complexity 1 25 0 1673 140 72 0 chr4 18518416 18518694 -183809653 - AluSq SINE Alu -15 298 1 1586 159 6 41 chr4 18518754 18519069 -183809278 - AluJo SINE Alu -8 304 1 2105 106 3 0 chr4 18519080 18519373 -183808974 - AluSc SINE Alu -15 294 1 2438 118 31 14 chr4 18520752 18521107 -183807240 - THE1B LTR MaLR -3 361 1 2112 121 7 0 chr4 18521180 18521477 -183806870 + AluSx SINE Alu 1 299 -13 277 238 0 16 chr4 18524081 18524144 -183804203 + MIR SINE MIR 131 192 -70 1077 132 0 0 chr4 18524152 18524311 -183804036 + AluSp SINE Alu 137 295 -18 406 86 0 17 chr4 18524740 18524798 -183803549 - Alu SINE Alu -20 292 236 1233 125 115 10 chr4 18524963 18525025 -183803322 - AluSx SINE Alu -91 221 167 2027 100 31 0 chr4 18525025 18525314 -183803033 - AluSc SINE Alu -11 298 1 1233 125 115 10 chr4 18525314 18525451 -183802896 - AluSx SINE Alu -145 167 1 953 85 0 0 chr4 18525782 18525911 -183802436 + AluSg/x SINE Alu 173 301 -9 510 255 121 38 chr4 18526077 18526316 -183802031 + MER90 LTR ERV1 1 259 -316 534 152 0 0 chr4 18526317 18526409 -183801938 + (TG)n Simple_repeat Simple_repeat 2 93 0 904 208 212 4 chr4 18526422 18526677 -183801670 + MER90 LTR ERV1 307 614 0 1667 82 21 4 chr4 18527070 18527303 -183801044 + AluSx SINE Alu 55 291 -21 663 309 127 37 chr4 18527307 18527686 -183800661 + ERVL LTR ERVL 2310 2722 -3042 379 246 60 60 chr4 18527893 18528076 -183800271 + L1ME LINE L1 5525 5707 -414 1803 175 33 19 chr4 18528314 18528674 -183799673 + MLT1A1 LTR MaLR 1 365 0 956 173 226 12 chr4 18529282 18529525 -183798822 - AluJo SINE Alu -7 295 1 1904 152 0 13 chr4 18530120 18530435 -183797912 - AluJb SINE Alu 0 312 2 2019 111 3 3 chr4 18530985 18531283 -183797064 - AluSx SINE Alu -14 298 1 676 296 28 9 chr4 18531342 18531555 -183796792 - MIR SINE MIR 0 262 46 396 296 117 39 chr4 18532145 18532392 -183795955 - MER46C DNA MER2_type -3 335 58 2052 130 0 0 chr4 18532392 18532685 -183795662 - AluSx SINE Alu -19 293 1 396 296 117 39 chr4 18532685 18532744 -183795603 - MER46C DNA MER2_type -280 58 5 291 187 88 0 chr4 18532843 18532934 -183795413 - L1ME4a LINE L1 -15 6106 6008 541 223 79 60 chr4 18533547 18533812 -183794535 - L1MC5 LINE L1 -60 7901 7632 1957 109 18 0 chr4 18534178 18534463 -183793884 - AluSx SINE Alu -21 291 2 2038 91 0 7 chr4 18535090 18535388 -183792959 - AluSg SINE Alu -14 296 1 519 221 195 15 chr4 18535475 18535670 -183792677 + MIR SINE MIR 13 242 -20 674 237 190 37 chr4 18535794 18536196 -183792151 + L2 LINE L2 2570 2909 -404 1877 112 3 86 chr4 18536196 18536238 -183792109 - AluJb SINE Alu -1 311 267 228 35 0 0 chr4 18536238 18536267 -183792080 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1877 112 3 86 chr4 18536267 18536563 -183791784 - AluJb SINE Alu -45 267 1 674 237 190 37 chr4 18536563 18536712 -183791635 + L2 LINE L2 2909 3313 0 1629 138 15 0 chr4 18536926 18537194 -183791153 - AluSx SINE Alu -40 272 1 263 284 15 0 chr4 18537194 18537261 -183791086 + MER81 DNA DNA 47 114 0 2149 97 0 10 chr4 18537893 18538193 -183790154 - AluSq SINE Alu -16 297 1 2151 83 6 41 chr4 18538252 18538566 -183789781 + AluSg SINE Alu 1 303 -7 509 236 50 45 chr4 18538653 18538852 -183789495 + L1M4 LINE L1 3317 3516 -2630 318 288 52 63 chr4 18538898 18538986 -183789361 - MIR SINE MIR -13 249 162 1850 158 0 0 chr4 18538986 18539290 -183789057 - AluSx SINE Alu -3 309 6 318 288 52 63 chr4 18539290 18539392 -183788955 - MIR SINE MIR -100 162 61 2116 85 0 63 chr4 18539528 18539859 -183788488 - AluSg SINE Alu 0 310 1 186 355 108 64 chr4 18540622 18540873 -183787474 + L2 LINE L2 3007 3268 -4 14418 35 0 2 chr4 18542307 18544804 -183783543 + L1PA5 LINE L1 3650 6154 0 1641 166 20 7 chr4 18545314 18545610 -183782737 - AluJo SINE Alu -12 300 1 454 275 8 67 chr4 18546036 18546226 -183782121 - MIR SINE MIR -55 153 16 2137 105 7 33 chr4 18546410 18546716 -183781631 - AluSx SINE Alu -14 298 1 247 296 74 0 chr4 18547136 18547217 -183781130 + L2 LINE L2 3227 3313 0 2433 87 0 0 chr4 18547364 18547662 -183780685 + AluY SINE Alu 1 298 -13 735 241 7 0 chr4 18547849 18548270 -183780077 + (TCCA)n Simple_repeat Simple_repeat 1 424 0 776 144 0 38 chr4 18548964 18549096 -183779251 - FLAM_C SINE Alu -5 128 2 2720 48 0 3 chr4 18549317 18549628 -183778719 + AluY SINE Alu 1 310 -1 969 225 5 14 chr4 18549674 18549883 -183778464 - MIR SINE MIR -25 237 31 553 256 44 30 chr4 18550130 18550191 -183778156 - MIR SINE MIR 0 262 203 2437 61 20 0 chr4 18550191 18550485 -183777862 - AluY SINE Alu -11 300 1 553 256 44 30 chr4 18550485 18550626 -183777721 - MIR SINE MIR -59 203 57 237 219 47 16 chr4 18551231 18551295 -183777052 + MLT1K LTR MaLR 183 248 -340 180 204 0 82 chr4 18551635 18551684 -183776663 - L2 LINE L2 -5 3267 3223 2284 141 100 50 chr4 18551766 18552247 -183776100 + MLT1D LTR MaLR 1 505 0 194 189 14 95 chr4 18552296 18552370 -183775977 - MIR SINE MIR -114 148 81 749 181 16 0 chr4 18552413 18552540 -183775807 - FLAM_C SINE Alu -10 133 5 1668 179 24 0 chr4 18552913 18553204 -183775143 - AluJo SINE Alu -11 301 4 750 246 22 6 chr4 18553892 18554075 -183774272 - MIR SINE MIR -35 227 42 2085 155 0 0 chr4 18554453 18554763 -183773584 - AluSx SINE Alu -2 310 1 1212 278 116 44 chr4 18554784 18555553 -183772794 - HAL1 LINE L1 0 2507 1684 2343 115 0 0 chr4 18555714 18556018 -183772329 - AluSx SINE Alu -8 304 1 474 238 33 0 chr4 18556202 18556324 -183772023 + MIR SINE MIR 65 190 -72 222 263 28 164 chr4 18556881 18557170 -183771177 + L2 LINE L2 2972 3299 -14 2014 141 3 7 chr4 18557170 18557468 -183770879 - AluJo SINE Alu -15 297 1 222 263 28 164 chr4 18557468 18557549 -183770798 + L2 LINE L2 3299 3288 -25 2452 77 3 0 chr4 18557549 18557847 -183770500 - AluSx SINE Alu -13 299 1 222 263 28 164 chr4 18557847 18557871 -183770476 + L2 LINE L2 3287 3313 0 449 300 96 23 chr4 18559087 18559307 -183769040 + MIR SINE MIR 2 237 -25 2272 98 0 7 chr4 18559330 18559635 -183768712 + AluSq SINE Alu 1 303 -10 3516 219 57 19 chr4 18559935 18560398 -183767949 - L1ME2 LINE L1 -1 6163 5719 2266 113 0 0 chr4 18560398 18560698 -183767649 - AluSx SINE Alu -11 301 2 3516 219 57 19 chr4 18560698 18560996 -183767351 - L1ME2 LINE L1 -445 5719 5366 2076 152 0 3 chr4 18560996 18561298 -183767049 - AluJb SINE Alu -11 301 1 3516 219 57 19 chr4 18561298 18561360 -183766987 - L1ME2 LINE L1 -798 5366 5308 1925 134 13 10 chr4 18561364 18561677 -183766670 + L1P LINE L1 4076 4389 -1757 261 0 0 0 chr4 18561677 18561706 -183766641 + (CA)n Simple_repeat Simple_repeat 2 30 0 2111 145 27 19 chr4 18561774 18562146 -183766201 + THE1C LTR MaLR 1 375 0 208 328 160 0 chr4 18562356 18562481 -183765866 + MIR SINE MIR 88 232 -30 201 74 0 0 chr4 18562729 18562756 -183765591 + (A)n Simple_repeat Simple_repeat 1 27 0 253 386 0 15 chr4 18562967 18563099 -183765248 - MIR SINE MIR -120 142 13 357 295 11 0 chr4 18563554 18563649 -183764698 + MIR3 SINE MIR 65 160 -48 414 278 132 5 chr4 18563815 18564020 -183764327 + L2 LINE L2 1886 2116 -1198 290 216 165 0 chr4 18564056 18564153 -183764194 + L2 LINE L2 2899 3011 -302 359 271 371 6 chr4 18564174 18564344 -183764003 + MIR SINE MIR 15 246 -16 1926 144 0 63 chr4 18564364 18564683 -183763664 - AluSx SINE Alu -11 301 3 578 260 119 22 chr4 18564700 18564927 -183763420 + L2 LINE L2 3047 3295 -18 1688 196 10 3 chr4 18565011 18565317 -183763030 - AluJo SINE Alu 0 312 5 817 291 63 29 chr4 18565708 18566024 -183762323 + MLT2F LTR ERVL 1 327 -336 1088 269 70 36 chr4 18566024 18566437 -183761910 + MLT2F LTR ERVL 237 663 0 225 265 44 0 chr4 18566438 18566506 -183761841 + L2 LINE L2 2978 3048 -224 2242 118 0 9 chr4 18566582 18566897 -183761450 - AluSx SINE Alu 0 312 1 347 186 93 35 chr4 18566916 18567002 -183761345 - L2 LINE L2 -13 3300 3210 337 274 94 18 chr4 18567689 18567912 -183760435 + L1M4 LINE L1 2405 2644 -3502 382 246 156 24 chr4 18568183 18568517 -183759830 + L1M4 LINE L1 2961 3338 -2808 236 352 29 9 chr4 18568783 18568888 -183759459 - MIR SINE MIR -68 140 34 1972 269 28 10 chr4 18569044 18569546 -183758801 + L1PB1 LINE L1 1 511 -5380 2176 206 64 13 chr4 18569548 18570381 -183757966 + L1PB1 LINE L1 684 1244 -4677 * 3142 202 1 22 chr4 18570374 18571023 -183757324 - L1 LINE L1 -1941 4205 3570 6205 96 18 3 chr4 18571023 18571985 -183756362 + L1PB1 LINE L1 5177 6151 0 862 261 28 4 chr4 18572003 18572256 -183756091 + L1PB1 LINE L1 1305 1563 -4407 14143 125 32 25 chr4 18572270 18574540 -183753807 - Tigger1 DNA MER2_type 0 2418 132 1180 143 26 0 chr4 18574539 18574728 -183753619 + Tigger1 DNA MER2_type 2224 2417 -1 * 413 192 0 0 chr4 18574728 18574801 -183753546 + Tigger3(Golem) DNA MER2_type 69 141 -2888 * 1600 149 4 19 chr4 18574799 18575061 -183753286 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 1922 158 0 7 chr4 18575117 18575409 -183752938 - AluJb SINE Alu -22 290 1 9953 156 17 11 chr4 18575450 18578198 -183750149 + L1PB1 LINE L1 3172 5927 -48 467 187 60 22 chr4 18578176 18578310 -183750037 + L1MA8 LINE L1 5972 6110 -5 * 407 63 0 16 chr4 18578484 18578547 -183749800 + L1PB1 LINE L1 6090 6151 0 1870 158 7 7 chr4 18580542 18580858 -183747489 - AluSx SINE Alu 0 312 3 282 328 175 11 chr4 18581212 18581389 -183746958 + L1MC4a LINE L1 5427 5632 -2176 665 293 99 9 chr4 18581412 18581634 -183746713 - MIR SINE MIR -20 242 1 389 227 37 49 chr4 18581647 18581850 -183746497 + L1MC4a LINE L1 5692 5798 -323 1687 161 32 4 chr4 18581855 18582134 -183746213 + AluJb SINE Alu 1 287 -25 253 90 41 49 chr4 18582159 18582281 -183746066 + (TATAA)n Simple_repeat Simple_repeat 1 121 0 198 71 0 0 chr4 18582275 18582303 -183746044 + (TTA)n Simple_repeat Simple_repeat 2 29 0 * 210 356 11 0 chr4 18582622 18582712 -183745635 + L2 LINE L2 3182 3272 0 3371 75 17 9 chr4 18582812 18583278 -183745069 + L1PA10 LINE L1 5699 6168 0 2373 90 0 32 chr4 18583330 18583641 -183744706 + AluSg SINE Alu 1 301 -9 790 155 210 55 chr4 18583732 18583913 -183744434 + MER20 DNA MER1_type 3 211 -8 311 260 145 41 chr4 18584576 18584721 -183743626 + MIR SINE MIR 20 200 -62 1919 153 3 0 chr4 18584721 18585015 -183743332 + AluJb SINE Alu 1 295 -17 311 260 145 41 chr4 18585015 18585086 -183743261 + MIR SINE MIR 200 262 0 1712 218 43 41 chr4 18585528 18585992 -183742355 + MLT1C LTR MaLR 3 467 0 2350 109 0 3 chr4 18586742 18587054 -183741293 - AluSx SINE Alu -1 311 1 853 133 0 52 chr4 18587709 18587844 -183740503 - FLAM_C SINE Alu -5 128 1 295 123 18 18 chr4 18587850 18587907 -183740440 - MIR SINE MIR -55 207 151 2315 110 3 0 chr4 18587928 18588228 -183740119 + AluSx SINE Alu 1 301 -11 202 262 79 37 chr4 18588276 18588440 -183739907 - L2 LINE L2 -261 3011 2841 927 259 28 4 chr4 18589189 18589444 -183738903 + MIR SINE MIR 2 262 0 2315 106 3 3 chr4 18589465 18589777 -183738570 + AluSx SINE Alu 1 312 0 2296 75 0 0 chr4 18589854 18590132 -183738215 + AluSc SINE Alu 21 298 -11 207 224 20 10 chr4 18590227 18590325 -183738022 + GA-rich Low_complexity Low_complexity 4 102 0 183 295 49 0 chr4 18590663 18590724 -183737623 + MER5B DNA MER1_type 115 178 0 648 159 6 99 chr4 18590886 18591068 -183737279 - ORSL DNA AcHobo -110 165 1 263 257 76 0 chr4 18591125 18591230 -183737117 + MLT1L LTR MaLR 489 601 -14 813 157 0 43 chr4 18591891 18592031 -183736316 + AluJo SINE Alu 1 134 -178 2473 71 0 0 chr4 18592303 18592599 -183735748 + AluY SINE Alu 1 296 -15 632 264 155 27 chr4 18592719 18593125 -183735222 - L2 LINE L2 0 3313 2856 884 256 155 43 chr4 18593166 18593211 -183735136 - L2 LINE L2 -584 2730 2691 1847 165 3 25 chr4 18593211 18593527 -183734820 - AluJo SINE Alu -3 309 1 884 256 155 43 chr4 18593527 18594035 -183734312 - L2 LINE L2 -623 2691 2115 367 325 92 6 chr4 18594133 18594296 -183734051 - MIR SINE MIR 0 262 86 1662 182 0 4 chr4 18594605 18594920 -183733427 + AluJo SINE Alu 15 328 0 273 351 115 32 chr4 18594925 18595367 -183732980 - L2 LINE L2 -429 2885 2407 189 132 0 0 chr4 18596139 18596177 -183732170 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 240 293 0 12 chr4 18596718 18596800 -183731547 + L1MEc LINE L1 610 690 -5706 3107 235 120 17 chr4 18596870 18598950 -183729397 + L1MEc LINE L1 661 2956 -3259 227 243 171 79 chr4 18599359 18599499 -183728848 + MIR SINE MIR 5 157 -105 435 322 48 35 chr4 18599526 18599756 -183728591 + LTR67 LTR ERVL 2 234 -323 233 186 23 0 chr4 18599805 18599848 -183728499 + MER3 DNA MER1_type 3 46 -163 1049 163 6 0 chr4 18599902 18600074 -183728273 + MER3 DNA MER1_type 37 209 0 604 236 156 5 chr4 18600121 18600320 -183728027 + LTR67 LTR ERVL 329 557 0 486 258 126 0 chr4 18601033 18601184 -183727163 + MIR SINE MIR 25 194 -68 1906 139 3 7 chr4 18601278 18601580 -183726767 + AluJb SINE Alu 3 303 -9 408 273 58 88 chr4 18601582 18601712 -183726635 - MIR SINE MIR 0 262 134 2325 91 0 0 chr4 18601712 18602020 -183726327 + AluSc SINE Alu 1 308 -1 408 273 58 88 chr4 18602020 18602124 -183726223 - MIR SINE MIR -128 134 28 394 282 39 77 chr4 18602468 18602702 -183725645 - MIR SINE MIR -5 257 33 245 229 20 144 chr4 18602833 18602986 -183725361 + L2 LINE L2 3138 3271 -1 404 239 23 0 chr4 18604648 18604736 -183723611 + MIR SINE MIR 64 153 -55 565 155 0 0 chr4 18604749 18604833 -183723514 + AluJ/FLAM SINE Alu 2 85 -227 1845 149 0 7 chr4 18604854 18605149 -183723198 - AluSq SINE Alu -20 293 1 806 144 8 0 chr4 18605163 18605288 -183723059 - AluJo SINE Alu -176 136 11 312 293 121 56 chr4 18606204 18606419 -183721928 + MIR SINE MIR 23 251 -11 2020 128 0 0 chr4 18606428 18606724 -183721623 + AluSx SINE Alu 5 300 -12 414 0 0 0 chr4 18606725 18606771 -183721576 + (TA)n Simple_repeat Simple_repeat 1 46 0 273 29 0 0 chr4 18606771 18606805 -183721542 + (TG)n Simple_repeat Simple_repeat 2 35 0 233 238 0 0 chr4 18606859 18606901 -183721446 + L2 LINE L2 3210 3251 -21 247 323 31 36 chr4 18607804 18607996 -183720351 - LTR16C LTR ERVL -20 471 281 280 235 44 15 chr4 18607996 18608064 -183720283 - L2 LINE L2 -559 2755 2686 1948 113 7 3 chr4 18608105 18608416 -183719931 + AluSq SINE Alu 1 312 0 1116 256 10 7 chr4 18608439 18608728 -183719619 + L1M4 LINE L1 3821 4110 -2036 605 297 50 14 chr4 18608806 18609025 -183719322 - L2 LINE L2 -843 2471 2245 422 302 144 62 chr4 18609025 18609132 -183719215 - L2 LINE L2 -1578 1736 1639 1716 164 7 17 chr4 18609132 18609261 -183719086 + AluJb SINE Alu 1 130 -182 1995 123 7 0 chr4 18609261 18609569 -183718778 + AluSg SINE Alu 1 310 0 1716 164 7 17 chr4 18609569 18609738 -183718609 + AluJb SINE Alu 130 296 -16 422 302 144 62 chr4 18609738 18610270 -183718077 - L2 LINE L2 -1675 1639 1045 351 252 47 9 chr4 18610284 18610391 -183717956 - L2 LINE L2 -2488 826 716 438 271 114 12 chr4 18611092 18611258 -183717089 + L2 LINE L2 3131 3313 0 266 303 133 36 chr4 18611577 18611742 -183716605 - MIR SINE MIR 0 262 82 370 318 63 91 chr4 18611817 18612069 -183716278 - L2 LINE L2 0 3272 3028 191 388 39 10 chr4 18612111 18612214 -183716133 + L2 LINE L2 3196 3301 -12 603 269 107 43 chr4 18612286 18612644 -183715703 + MLT1J2 LTR MaLR 70 438 -12 813 232 66 6 chr4 18612644 18612825 -183715522 - MER68 LTR ERV1 -2 560 369 300 244 0 26 chr4 18613164 18613242 -183715105 - L1MC4a LINE L1 -1903 5905 5830 2065 134 0 3 chr4 18613254 18613567 -183714780 + AluSx SINE Alu 1 312 0 1639 140 22 0 chr4 18613580 18613851 -183714496 + L1MA8 LINE L1 6015 6291 0 1630 171 13 10 chr4 18614402 18614707 -183713640 - AluJb SINE Alu -6 306 1 237 65 0 0 chr4 18614869 18614900 -183713447 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 1619 162 11 4 chr4 18614900 18615172 -183713175 - AluSx SINE Alu -38 274 1 508 231 172 0 chr4 18615197 18615331 -183713016 + MIR SINE MIR 96 252 -10 294 364 0 23 chr4 18615871 18615945 -183712402 - MIR SINE MIR -10 252 181 365 195 39 0 chr4 18615945 18616022 -183712325 - MADE1 DNA Mariner 0 80 1 294 364 0 23 chr4 18616022 18616076 -183712271 - MIR SINE MIR -81 181 127 245 295 137 55 chr4 18616108 18616291 -183712056 + MIR SINE MIR 65 262 0 251 290 0 14 chr4 18616311 18616380 -183711967 - MIR SINE MIR -165 97 30 246 297 119 10 chr4 18616438 18616539 -183711808 - L2 LINE L2 -16 3297 3186 372 254 63 130 chr4 18616584 18616946 -183711401 + MLT1H LTR MaLR 39 376 -33 3014 159 18 25 chr4 18617015 18617569 -183710778 - MER44D DNA MER2_type 0 605 1 2362 261 107 14 chr4 18617641 18618437 -183709910 + L2 LINE L2 1591 2460 -854 1530 120 28 99 chr4 18618440 18618667 -183709680 + L1M3 LINE L1 5374 5579 -604 2081 127 0 0 chr4 18618667 18618975 -183709372 + AluSc SINE Alu 1 308 -1 1530 120 28 99 chr4 18618975 18619031 -183709316 + L1M3 LINE L1 5579 5637 -546 350 306 89 8 chr4 18619033 18619157 -183709190 + L2 LINE L2 3179 3312 -1 2365 69 3 3 chr4 18619164 18619468 -183708879 + AluY SINE Alu 1 304 -7 263 290 46 11 chr4 18619799 18619910 -183708437 + MER5A DNA MER1_type 63 175 -3 437 147 0 0 chr4 18622064 18622139 -183706208 + L1PB3 LINE L1 6073 6147 -7 291 104 0 0 chr4 18622173 18622221 -183706126 + (CA)n Simple_repeat Simple_repeat 1 48 0 523 238 50 12 chr4 18622221 18622381 -183705966 + L1ME4a LINE L1 5947 6112 -9 227 299 26 86 chr4 18623212 18623329 -183705018 + L2 LINE L2 3160 3269 -3 2261 77 0 3 chr4 18623988 18624285 -183704062 - AluY SINE Alu -15 296 1 1370 296 66 28 chr4 18624286 18624422 -183703925 - MLT1K LTR MaLR -3 585 456 183 42 0 0 chr4 18624422 18624446 -183703901 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2021 126 0 0 chr4 18624448 18624733 -183703614 - AluSq SINE Alu -28 285 1 1370 296 66 28 chr4 18624733 18625063 -183703284 - MLT1K LTR MaLR -132 456 98 352 245 13 86 chr4 18625360 18625485 -183702862 + MIR3 SINE MIR 18 132 -76 1791 131 40 96 chr4 18625485 18625882 -183702465 - THE1C LTR MaLR 0 375 1 352 245 13 86 chr4 18625882 18625907 -183702440 + MIR3 SINE MIR 132 157 -51 773 206 7 14 chr4 18626059 18626200 -183702147 + AluJo SINE Alu 3 142 -170 293 269 0 0 chr4 18626201 18626279 -183702068 + (ATG)n Simple_repeat Simple_repeat 1 78 0 944 124 0 0 chr4 18626322 18626459 -183701888 + FRAM SINE Alu 21 157 -19 24 0 0 0 chr4 18626802 18626826 -183701521 + AT_rich Low_complexity Low_complexity 1 24 0 15266 54 0 9 chr4 18626830 18628692 -183699655 + L1P LINE L1 8 1852 -4294 * 30548 34 86 3 chr4 18628687 18633408 -183694939 + L1PA4 LINE L1 1026 6155 0 26 30 0 0 chr4 18633431 18633464 -183694883 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr4 18633513 18633536 -183694811 + AT_rich Low_complexity Low_complexity 1 23 0 727 353 25 0 chr4 18634099 18634340 -183694007 - MIR SINE MIR -6 256 10 554 224 25 31 chr4 18634763 18634924 -183693423 - MLT1J LTR MaLR -313 198 39 2187 107 3 0 chr4 18634924 18635224 -183693123 + AluSq SINE Alu 1 301 -12 323 342 34 8 chr4 18635319 18635436 -183692911 - MIR SINE MIR -70 138 19 199 323 75 11 chr4 18635610 18635703 -183692644 - MIR3 SINE MIR -11 197 99 241 237 110 42 chr4 18635915 18636033 -183692314 - L2 LINE L2 -44 3269 3144 668 269 45 74 chr4 18636110 18636422 -183691925 + MLT1K LTR MaLR 124 426 -162 197 319 125 60 chr4 18636480 18636696 -183691651 - MIR SINE MIR -1 261 32 2289 139 68 12 chr4 18636735 18637144 -183691203 + MSTB1 LTR MaLR 1 432 0 471 251 20 96 chr4 18637551 18637617 -183690730 + MLT1J LTR MaLR 326 395 -116 1893 135 0 7 chr4 18637617 18637913 -183690434 - AluSx SINE Alu -14 298 5 471 251 20 96 chr4 18637913 18638045 -183690302 + MLT1J LTR MaLR 395 509 -2 327 233 0 41 chr4 18638056 18638129 -183690218 + L2 LINE L2 3189 3258 -14 2053 135 0 0 chr4 18638131 18638435 -183689912 + AluSx SINE Alu 1 304 -8 1073 278 60 14 chr4 18639108 18639472 -183688875 - L2 LINE L2 -1 3312 2932 2296 86 3 0 chr4 18639473 18639777 -183688570 + AluSx SINE Alu 1 305 -7 823 222 10 24 chr4 18639781 18639988 -183688359 + L1MB1 LINE L1 5825 6028 -140 818 161 39 7 chr4 18640020 18640175 -183688172 + L1MB1 LINE L1 6007 6166 -2 387 89 0 0 chr4 18640175 18640231 -183688116 + (TA)n Simple_repeat Simple_repeat 2 57 0 615 160 0 10 chr4 18640247 18640484 -183687863 + AluJo SINE Alu 1 271 -41 975 249 145 60 chr4 18640491 18641223 -183687124 + LTR1B LTR ERV1 33 826 0 558 269 130 4 chr4 18641302 18641540 -183686807 - L2 LINE L2 -424 2890 2623 1708 204 184 37 chr4 18641849 18642393 -183685954 - MLT1E3 LTR MaLR 0 624 1 446 0 19 0 chr4 18642523 18642577 -183685770 + (CA)n Simple_repeat Simple_repeat 1 55 0 1133 96 0 0 chr4 18642652 18642808 -183685539 + AluSg/x SINE Alu 152 307 -3 286 303 124 28 chr4 18643271 18643318 -183685029 + MIR3 SINE MIR 49 90 -118 974 326 10 59 chr4 18643318 18643806 -183684541 + LTR16B LTR ERVL 1 464 0 286 303 124 28 chr4 18643806 18643903 -183684444 + MIR3 SINE MIR 90 207 -1 2123 108 0 10 chr4 18644024 18644320 -183684027 - AluSx SINE Alu -19 293 1 207 277 31 31 chr4 18644443 18644508 -183683839 - MER5A DNA MER1_type 0 189 125 2176 88 0 7 chr4 18644510 18644807 -183683540 + AluY SINE Alu 1 295 -16 2226 94 0 23 chr4 18644817 18645125 -183683222 + AluSx SINE Alu 1 301 -11 1980 118 7 20 chr4 18645580 18645701 -183682646 + AluSx SINE Alu 10 131 -181 2702 19 0 0 chr4 18645701 18646010 -183682337 + AluY SINE Alu 1 309 -2 1980 118 7 20 chr4 18646010 18646194 -183682153 + AluSx SINE Alu 131 311 -1 1761 167 0 10 chr4 18646567 18646878 -183681469 - AluJb SINE Alu -4 308 1 1307 207 13 26 chr4 18646889 18647194 -183681153 - AluJo SINE Alu -11 301 1 794 158 0 16 chr4 18647364 18647491 -183680856 + FLAM_C SINE Alu 4 128 -5 659 310 69 38 chr4 18647761 18648342 -183680005 - L1ME4a LINE L1 -56 6065 5467 1019 217 58 0 chr4 18648537 18648744 -183679603 - MER20 DNA MER1_type 0 219 1 741 289 159 56 chr4 18648829 18649087 -183679260 + MLT1L LTR MaLR 21 251 -364 2298 106 3 0 chr4 18649087 18649390 -183678957 + AluSx SINE Alu 1 304 -8 741 289 159 56 chr4 18649390 18649664 -183678683 + MLT1L LTR MaLR 251 608 -7 396 0 0 0 chr4 18649885 18649929 -183678418 + (CA)n Simple_repeat Simple_repeat 1 44 0 214 196 0 22 chr4 18650004 18650050 -183678297 + A-rich Low_complexity Low_complexity 4 48 0 312 372 0 7 chr4 18650348 18650493 -183677854 + (TGGG)n Simple_repeat Simple_repeat 1 144 0 219 268 125 9 chr4 18651250 18651362 -183676985 + L2 LINE L2 3139 3263 -50 181 294 44 0 chr4 18651606 18651674 -183676673 + L3b LINE CR1 1397 1467 -116 1834 184 35 111 chr4 18651710 18652189 -183676158 - LTR47B LTR ERVL 0 443 1 2294 108 3 9 chr4 18652331 18652646 -183675701 + AluSp SINE Alu 1 313 0 23 0 0 0 chr4 18652917 18652940 -183675407 + AT_rich Low_complexity Low_complexity 1 23 0 1562 190 54 0 chr4 18652941 18653220 -183675127 - AluJo SINE Alu -18 294 1 6098 84 15 1 chr4 18653329 18654137 -183674210 + L1PA11 LINE L1 5351 6169 -5 1101 202 22 101 chr4 18654132 18654489 -183673858 + L1MC5 LINE L1 6643 6971 -990 * 2640 214 39 82 chr4 18654510 18654713 -183673634 + L1MC5 LINE L1 6956 7166 -795 2078 128 7 0 chr4 18654713 18655002 -183673345 + AluSx SINE Alu 10 300 -12 2640 214 39 82 chr4 18655002 18655797 -183672550 + L1MC5 LINE L1 7166 7911 -50 482 231 32 39 chr4 18655985 18656141 -183672206 + L2 LINE L2 2231 2385 -929 321 268 116 18 chr4 18656134 18656246 -183672101 + MIR3 SINE MIR 62 184 -24 * 1362 134 140 32 chr4 18657238 18657553 -183670794 + MSTA LTR MaLR 1 398 -30 2133 109 36 13 chr4 18657553 18657857 -183670490 - AluSx SINE Alu -1 311 1 2239 106 0 19 chr4 18658246 18658558 -183669789 + AluSg SINE Alu 2 307 -3 577 153 14 10 chr4 18659057 18659197 -183669150 + MER20B DNA MER1_type 33 216 -3 950 184 69 56 chr4 18659274 18659305 -183669042 + MLT1B LTR MaLR 155 184 -206 186 43 0 0 chr4 18659305 18659328 -183669019 + (TC)n Simple_repeat Simple_repeat 2 24 0 950 184 69 56 chr4 18659328 18659529 -183668818 + MLT1B LTR MaLR 184 390 0 1906 108 24 0 chr4 18659623 18659874 -183668473 - AluSq SINE Alu -48 265 9 277 323 8 8 chr4 18659898 18660028 -183668319 + L2 LINE L2 1932 2061 -1253 225 0 0 0 chr4 18660081 18660106 -183668241 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 199 314 0 0 chr4 18660209 18660260 -183668087 + L2 LINE L2 3263 3313 0 210 375 0 0 chr4 18660286 18660350 -183667997 + L2 LINE L2 2217 2280 -1034 222 128 0 0 chr4 18661454 18661493 -183666854 + (CA)n Simple_repeat Simple_repeat 1 39 0 195 333 86 0 chr4 18662592 18662673 -183665674 - L2 LINE L2 -27 3286 3199 241 51 26 51 chr4 18662805 18662844 -183665503 + MER5A DNA MER1_type 39 76 -113 2062 131 13 3 chr4 18662844 18663142 -183665205 + AluJo SINE Alu 1 301 -11 28 48 0 0 chr4 18663460 18663502 -183664845 + AT_rich Low_complexity Low_complexity 1 42 0 8818 134 67 43 chr4 18663773 18665432 -183662915 - pTR5 LTR ERV1 0 2438 741 299 207 0 0 chr4 18665784 18665842 -183662505 - MER94 DNA DNA -76 58 1 1098 186 51 140 chr4 18665969 18666340 -183662007 - MER58B DNA MER1_type -1 340 3 2003 117 18 7 chr4 18666349 18666631 -183661716 - AluSx SINE Alu -22 290 6 197 200 0 0 chr4 18666817 18666847 -183661500 + L2 LINE L2 3224 3253 -19 2400 94 7 0 chr4 18666856 18667164 -183661183 - AluSp SINE Alu -3 310 1 239 210 202 48 chr4 18667191 18667315 -183661032 + L1ME LINE L1 5772 5914 -207 506 194 0 20 chr4 18667843 18667941 -183660406 - L2 LINE L2 -10 3303 3208 539 314 102 46 chr4 18668055 18668488 -183659859 - L2 LINE L2 -352 2962 2506 2232 93 0 7 chr4 18668498 18668827 -183659520 - AluSx SINE Alu 0 327 1 849 172 35 12 chr4 18668879 18669048 -183659299 - L1MB8 LINE L1 -2 6176 6004 966 161 180 9 chr4 18669073 18669295 -183659052 - L1MB8 LINE L1 -402 5776 5517 251 188 62 0 chr4 18669297 18669361 -183658986 - L2 LINE L2 -608 2706 2639 250 315 206 0 chr4 18670042 18670134 -183658213 - L2 LINE L2 -245 3068 2958 219 300 39 78 chr4 18671152 18671332 -183657015 + MIR SINE MIR 48 220 -42 2416 91 3 0 chr4 18671631 18671938 -183656409 - AluSp SINE Alu -5 308 1 1607 163 36 4 chr4 18672156 18672462 -183655885 + AluJb SINE Alu 1 315 0 329 203 25 38 chr4 18672671 18672750 -183655597 - MER5B DNA MER1_type 0 178 101 587 208 57 158 chr4 18672807 18673049 -183655298 - L1MC4 LINE L1 -5 8037 7772 1509 85 0 0 chr4 18673049 18673237 -183655110 - AluSc SINE Alu -2 307 120 587 208 57 158 chr4 18673237 18673255 -183655092 - L1MC4 LINE L1 -270 7772 7754 2087 110 0 7 chr4 18673255 18673546 -183654801 - AluSc SINE Alu -20 289 1 587 208 57 158 chr4 18673546 18673741 -183654606 - L1MC4 LINE L1 -288 7754 7627 1806 160 14 0 chr4 18673772 18674066 -183654281 + L1PB4 LINE L1 5858 6155 -1 246 264 69 14 chr4 18674348 18674420 -183653927 - L2 LINE L2 -8 3264 3189 2342 85 0 10 chr4 18674458 18674753 -183653594 - AluSp SINE Alu -21 292 1 1408 235 128 42 chr4 18674991 18675562 -183652785 + L1ME2 LINE L1 5546 6334 0 660 290 85 43 chr4 18675603 18675894 -183652453 + L1MEd LINE L1 913 1190 -1300 1525 145 118 12 chr4 18675894 18676149 -183652198 + AluJo SINE Alu 18 299 -13 660 290 85 43 chr4 18676149 18676558 -183651789 + L1MEd LINE L1 1190 1749 -741 25 65 0 0 chr4 18676581 18676627 -183651720 + AT_rich Low_complexity Low_complexity 1 46 0 1562 157 36 39 chr4 18676647 18676952 -183651395 + AluJo SINE Alu 9 312 0 241 281 207 0 chr4 18677515 18677597 -183650750 + L2 LINE L2 3214 3312 -1 242 365 59 0 chr4 18677644 18677729 -183650618 + L2 LINE L2 3205 3294 -19 225 213 25 113 chr4 18678742 18678822 -183649525 + L2 LINE L2 3200 3272 0 223 327 71 26 chr4 18680342 18680455 -183647892 - MIR3 SINE MIR -78 130 13 1084 235 58 8 chr4 18681004 18681184 -183647163 + MER20B DNA MER1_type 283 481 -302 2121 147 0 0 chr4 18681184 18681490 -183646857 - AluSx SINE Alu -6 306 1 1084 235 58 8 chr4 18681490 18681569 -183646778 + MER20B DNA MER1_type 481 555 -228 * 1989 161 24 9 chr4 18681557 18681892 -183646455 + MER2 DNA MER2_type 6 345 0 244 196 178 56 chr4 18681953 18682060 -183646287 + MER20B DNA MER1_type 664 783 0 355 231 191 36 chr4 18682409 18682577 -183645770 - MIR SINE MIR -11 251 57 842 156 15 30 chr4 18682679 18682814 -183645533 - AluJo SINE Alu -177 135 3 307 254 24 71 chr4 18682903 18683029 -183645318 - L1ME4a LINE L1 -51 6070 5951 2073 95 42 18 chr4 18683106 18683391 -183644956 - AluSx SINE Alu -20 292 1 1902 125 62 0 chr4 18683396 18683684 -183644663 - AluSx SINE Alu -6 306 1 1023 171 0 0 chr4 18684238 18684390 -183643957 + FRAM SINE Alu 1 152 -14 207 0 0 0 chr4 18684393 18684416 -183643931 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 322 292 31 10 chr4 18685525 18685621 -183642726 + L2 LINE L2 2955 3052 -220 254 313 112 15 chr4 18686279 18686413 -183641934 - MER5A DNA MER1_type -41 148 2 715 255 102 18 chr4 18686630 18686963 -183641384 - Charlie7 DNA MER1_type -240 2372 2012 408 267 153 35 chr4 18687689 18687891 -183640456 - MLT1J2 LTR MaLR -157 293 68 1668 109 0 9 chr4 18687947 18688176 -183640171 - AluSc SINE Alu -19 290 64 216 0 0 0 chr4 18688247 18688271 -183640076 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1330 171 116 27 chr4 18688274 18688532 -183639815 - AluJo SINE Alu -31 281 1 520 211 105 9 chr4 18688602 18688716 -183639631 + L2 LINE L2 3189 3313 0 26 0 0 0 chr4 18688916 18688942 -183639405 + AT_rich Low_complexity Low_complexity 1 26 0 2179 227 108 55 chr4 18689324 18689507 -183638840 + L1ME3 LINE L1 5007 5179 -983 2033 119 3 55 chr4 18689507 18689818 -183638529 + AluSx SINE Alu 1 295 -17 2179 227 108 55 chr4 18689818 18689897 -183638450 + L1ME3 LINE L1 5179 5252 -910 700 191 15 44 chr4 18689897 18690033 -183638314 + FLAM_C SINE Alu 1 132 -1 2179 227 108 55 chr4 18690033 18690164 -183638183 + L1ME3 LINE L1 5252 5375 -787 317 61 0 20 chr4 18690164 18690213 -183638134 + (TTAAA)n Simple_repeat Simple_repeat 3 50 0 2179 227 108 55 chr4 18690213 18690366 -183637981 + L1ME3 LINE L1 5375 5518 -644 8028 26 10 1 chr4 18690366 18691382 -183636965 + L1PA4 LINE L1 5131 6154 -1 2179 227 108 55 chr4 18691382 18691923 -183636424 + L1ME3 LINE L1 5518 6162 0 2112 115 97 6 chr4 18692225 18692556 -183635791 - MER46B DNA MER2_type 0 236 1 2344 245 166 17 chr4 18693004 18693927 -183634420 - HAL1 LINE L1 -698 1809 750 625 319 125 12 chr4 18693991 18694327 -183634020 - HAL1 LINE L1 -1873 634 261 703 168 91 131 chr4 18694333 18694490 -183633857 + Charlie7 DNA MER1_type 1631 1772 -840 2006 115 11 4 chr4 18694490 18694768 -183633579 + AluSc SINE Alu 1 280 -29 703 168 91 131 chr4 18694768 18694907 -183633440 + Charlie7 DNA MER1_type 1772 1915 -697 22 0 0 0 chr4 18694946 18694968 -183633379 + AT_rich Low_complexity Low_complexity 1 22 0 846 214 0 19 chr4 18695037 18695191 -183633156 - FRAM SINE Alu -15 151 1 540 154 282 13 chr4 18695310 18695459 -183632888 - MER53 DNA DNA 0 189 1 201 74 0 0 chr4 18696366 18696393 -183631954 + (T)n Simple_repeat Simple_repeat 1 27 0 1539 137 49 8 chr4 18696407 18696670 -183631677 + AluJb SINE Alu 24 297 -15 307 276 13 0 chr4 18697336 18697412 -183630935 + L3 LINE CR1 1244 1320 -257 2422 70 20 0 chr4 18697929 18698227 -183630120 + AluSp SINE Alu 1 304 -9 2226 102 7 3 chr4 18699198 18699491 -183628856 - AluSx SINE Alu -18 294 1 2234 69 4 0 chr4 18699909 18700185 -183628162 + AluY SINE Alu 27 303 -8 189 74 0 0 chr4 18700702 18700729 -183627618 + (A)n Simple_repeat Simple_repeat 1 27 0 2153 129 0 0 chr4 18701092 18701386 -183626961 - AluSx SINE Alu -18 294 1 180 0 0 0 chr4 18703146 18703166 -183625181 + (T)n Simple_repeat Simple_repeat 1 20 0 277 259 168 0 chr4 18703371 18703502 -183624845 + L1ME LINE L1 3681 3833 -2313 1790 150 3 18 chr4 18703741 18704027 -183624320 + AluJo SINE Alu 1 282 -30 502 263 129 18 chr4 18704292 18704463 -183623884 - MIR SINE MIR -28 234 45 408 299 124 25 chr4 18704641 18705045 -183623302 + L1ME LINE L1 4509 4952 -1194 281 302 77 6 chr4 18705151 18705320 -183623027 + L1ME LINE L1 4988 5168 -978 336 268 119 49 chr4 18705438 18705652 -183622695 + L1ME LINE L1 5433 5660 -699 247 150 0 0 chr4 18705998 18706038 -183622309 + L2 LINE L2 3214 3253 -19 183 42 0 0 chr4 18706661 18706685 -183621662 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2357 77 3 3 chr4 18706808 18707108 -183621239 + AluSx SINE Alu 1 300 -12 231 137 118 0 chr4 18707206 18707257 -183621090 + L1ME LINE L1 5756 5812 -352 479 221 140 0 chr4 18707257 18707393 -183620954 + MIR SINE MIR 108 262 0 306 209 55 33 chr4 18707689 18707780 -183620567 - MER34 LTR ERV1 0 542 450 906 219 145 37 chr4 18707883 18708207 -183620140 - MER34C LTR ERV1 -226 359 1 23 54 0 0 chr4 18709259 18709296 -183619051 + GC_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 18711462 18711484 -183616863 + AT_rich Low_complexity Low_complexity 1 22 0 403 278 83 89 chr4 18711547 18711874 -183616473 - L1M4 LINE L1 -762 5384 5060 339 118 430 21 chr4 18712383 18712476 -183615871 + FLAM_C SINE Alu 1 131 -2 1089 178 105 40 chr4 18712558 18712805 -183615542 - AluJo SINE Alu -49 263 1 2094 133 3 0 chr4 18713599 18713885 -183614462 - AluSx SINE Alu -25 287 1 2127 143 12 12 chr4 18714149 18714484 -183613863 - MER1B DNA MER1_type -1 338 4 2076 75 75 0 chr4 18714914 18715179 -183613168 + AluSc SINE Alu 1 285 -24 814 213 129 52 chr4 18716434 18716744 -183611603 - MER58B DNA MER1_type -4 337 4 408 232 139 60 chr4 18717133 18717435 -183610912 - L1MC4a LINE L1 -1902 5906 5581 2468 68 0 0 chr4 18717465 18717761 -183610586 - AluSc SINE Alu -13 296 1 25 0 0 0 chr4 18718117 18718142 -183610205 + AT_rich Low_complexity Low_complexity 1 25 0 2464 76 0 3 chr4 18718381 18718685 -183609662 + AluY SINE Alu 1 303 -8 2031 134 3 10 chr4 18719519 18719825 -183608522 - AluSq SINE Alu -8 305 2 2173 104 13 7 chr4 18720252 18720551 -183607796 - AluSg SINE Alu -9 301 1 288 167 19 19 chr4 18720672 18720726 -183607621 - Tigger5 DNA MER2_type -2269 54 1 293 238 158 20 chr4 18722160 18722261 -183606086 + MIR SINE MIR 50 164 -98 461 290 83 10 chr4 18722407 18722600 -183605747 - L3 LINE CR1 -3 1574 1368 763 263 129 4 chr4 18724900 18725132 -183603215 - MIR SINE MIR -1 261 1 926 323 145 24 chr4 18725150 18725821 -183602526 - L2 LINE L2 -339 2975 2224 1969 153 17 0 chr4 18725867 18726162 -183602185 - AluSx SINE Alu -12 300 1 200 194 0 0 chr4 18726175 18726211 -183602136 + MIR SINE MIR 53 88 -174 201 149 191 0 chr4 18726588 18726635 -183601712 + MIR SINE MIR 152 207 -55 21 0 0 0 chr4 18726823 18726844 -183601503 + AT_rich Low_complexity Low_complexity 1 21 0 886 141 105 144 chr4 18726924 18727237 -183601110 - MER33 DNA MER1_type -14 310 10 328 276 155 17 chr4 18727802 18727918 -183600429 - L2 LINE L2 -2 3270 3139 910 198 71 89 chr4 18728087 18728174 -183600173 + MER33 DNA MER1_type 7 94 -2491 2017 142 10 3 chr4 18728174 18728483 -183599864 + AluJb SINE Alu 1 311 -1 910 198 71 89 chr4 18728483 18728719 -183599628 + MER33 DNA MER1_type 94 324 0 286 348 67 43 chr4 18728724 18728934 -183599413 - L2 LINE L2 -424 2890 2676 1059 283 99 33 chr4 18729389 18729956 -183598391 - L2 LINE L2 -2 3311 2710 1322 189 129 7 chr4 18729981 18730283 -183598064 - MER58B DNA MER1_type -1 340 2 1474 274 95 36 chr4 18730291 18730956 -183597391 - L2 LINE L2 -650 2664 1961 1231 131 0 6 chr4 18731163 18731339 -183597008 + AluSg SINE Alu 13 187 -123 1391 114 10 0 chr4 18731339 18731532 -183596815 + AluSp SINE Alu 101 295 -18 234 0 0 0 chr4 18731547 18731573 -183596774 + (TTG)n Simple_repeat Simple_repeat 2 27 0 21 57 0 0 chr4 18731617 18731652 -183596695 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr4 18731684 18731714 -183596633 + AT_rich Low_complexity Low_complexity 1 30 0 26 50 0 0 chr4 18732169 18732209 -183596138 + AT_rich Low_complexity Low_complexity 1 40 0 857 199 23 23 chr4 18732652 18732868 -183595479 - L1PA2 LINE L1 -4 6151 5936 22 56 0 0 chr4 18732894 18732930 -183595417 + AT_rich Low_complexity Low_complexity 1 36 0 4034 183 61 21 chr4 18733244 18733275 -183595072 - L1MB5 LINE L1 -8 6166 6138 1688 144 58 0 chr4 18733275 18733553 -183594794 - AluJo SINE Alu -18 294 1 4034 183 61 21 chr4 18733553 18734720 -183593627 - L1MB5 LINE L1 -36 6138 4922 185 301 66 52 chr4 18736777 18736913 -183591434 - L2 LINE L2 -491 2823 2686 667 289 63 57 chr4 18737170 18737537 -183590810 - LTR16A LTR ERVL -58 392 24 249 279 78 26 chr4 18739279 18739433 -183588914 - L1ME4a LINE L1 -4 6117 5956 247 247 49 25 chr4 18741701 18741782 -183586565 + MER5A DNA MER1_type 100 182 -7 413 305 111 22 chr4 18744324 18744550 -183583797 - MIR SINE MIR -7 255 5 22 0 0 0 chr4 18745657 18745679 -183582668 + AT_rich Low_complexity Low_complexity 1 22 0 1214 144 0 6 chr4 18746424 18746605 -183581742 - AluJo SINE Alu -25 287 108 9241 44 2 0 chr4 18746607 18747732 -183580615 + L1P LINE L1 7 1133 -5013 7594 26 5 0 chr4 18747732 18749353 -183578994 + L1PA3 LINE L1 4531 6155 0 904 274 105 11 chr4 18749521 18750044 -183578303 - L1MC4a LINE L1 -344 5822 5320 329 252 78 40 chr4 18750370 18750515 -183577832 + MIR SINE MIR 45 192 -60 185 289 0 0 chr4 18751063 18751108 -183577239 - L2 LINE L2 -18 3254 3210 207 0 0 0 chr4 18751111 18751134 -183577213 + (T)n Simple_repeat Simple_repeat 1 23 0 264 246 18 0 chr4 18751166 18751223 -183577124 - MIR SINE MIR -83 125 68 282 322 199 7 chr4 18752207 18752353 -183575994 + MIR SINE MIR 46 219 -43 231 290 0 14 chr4 18752360 18752429 -183575918 + MIR SINE MIR 195 262 0 265 330 31 10 chr4 18752893 18752990 -183575357 + MIR SINE MIR 8 106 -156 466 231 91 28 chr4 18753805 18753948 -183574399 + MLT1H LTR MaLR 382 533 -16 641 330 138 32 chr4 18753974 18754287 -183574060 + L2 LINE L2 1640 1918 -1396 1152 203 132 26 chr4 18754287 18754636 -183573711 + MLT1B LTR MaLR 1 386 -4 641 330 138 32 chr4 18754636 18754859 -183573488 + L2 LINE L2 1918 2233 -1081 286 333 167 10 chr4 18754881 18755085 -183573262 + L2 LINE L2 3028 3263 -50 247 220 17 0 chr4 18755097 18755156 -183573191 + L1MEc LINE L1 10 69 -6327 577 275 125 72 chr4 18755176 18755576 -183572771 + L1MEc LINE L1 216 636 -5760 463 221 42 0 chr4 18755579 18755674 -183572673 - MER20 DNA MER1_type 0 219 121 885 234 43 0 chr4 18755674 18755858 -183572489 - MER20 DNA MER1_type -27 192 1 2817 280 65 13 chr4 18755862 18756504 -183571843 + L1MEc LINE L1 636 1243 -5153 2020 94 17 28 chr4 18756504 18756819 -183571528 + AluSp SINE Alu 1 312 0 2817 280 65 13 chr4 18756819 18757074 -183571273 + L1MEc LINE L1 1243 1483 -4913 2030 172 17 0 chr4 18757074 18757429 -183570918 + MER47A DNA MER2_type 4 364 -2 2817 280 65 13 chr4 18757429 18757807 -183570540 + L1MEc LINE L1 1483 1979 -4417 * 5423 141 58 41 chr4 18757805 18758284 -183570063 + L1PA15 LINE L1 4276 4745 -1420 2130 124 86 12 chr4 18758284 18758623 -183569724 - THE1B LTR MaLR 0 364 1 11669 83 9 5 chr4 18758623 18760196 -183568151 - THE1B-int LTR MaLR 0 1580 1 2047 135 72 26 chr4 18760196 18760544 -183567803 - THE1B LTR MaLR 0 364 1 5423 141 58 41 chr4 18760544 18761095 -183567252 + L1PA15 LINE L1 4745 5285 -880 2155 119 0 0 chr4 18761095 18761389 -183566958 + AluSx SINE Alu 1 294 -18 5423 141 58 41 chr4 18761389 18762205 -183566142 + L1PA15 LINE L1 5285 6160 -5 2474 240 57 23 chr4 18762217 18762295 -183566052 + L1MEc LINE L1 1995 2069 -4146 1543 160 86 0 chr4 18762295 18762563 -183565784 - AluJb SINE Alu -21 291 1 2474 240 57 23 chr4 18762563 18763440 -183564907 + L1MEc LINE L1 2069 2948 -3267 756 140 9 0 chr4 18763440 18763554 -183564793 - FLAM_C SINE Alu -28 115 1 694 194 26 0 chr4 18763562 18763717 -183564630 + L1MEc LINE L1 2946 3104 -3111 607 166 191 0 chr4 18763755 18763912 -183564435 + MER5A DNA MER1_type 1 187 -2 485 320 77 78 chr4 18763936 18764554 -183563793 + L2 LINE L2 2652 3271 -1 928 200 43 11 chr4 18765379 18765564 -183562783 - MER58A DNA MER1_type -3 221 31 862 298 147 45 chr4 18766935 18767896 -183560451 + L2 LINE L2 1293 2351 -963 420 169 0 0 chr4 18768239 18768304 -183560043 - AluJ SINE Alu -52 260 196 392 173 13 38 chr4 18768304 18768400 -183559947 - AluJo SINE Alu -144 158 86 241 298 23 76 chr4 18768443 18768574 -183559773 + L2 LINE L2 2990 3113 -159 215 226 0 57 chr4 18768802 18768855 -183559492 + L2 LINE L2 3255 3304 -9 23 97 0 0 chr4 18769216 18769288 -183559059 + AT_rich Low_complexity Low_complexity 1 72 0 1413 104 25 67 chr4 18770377 18770617 -183557730 + MER30 DNA MER1_type 1 230 0 24 0 0 0 chr4 18771174 18771198 -183557149 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 18776829 18776857 -183551490 + AT_rich Low_complexity Low_complexity 1 28 0 194 33 67 0 chr4 18778660 18778690 -183549657 + T-rich Low_complexity Low_complexity 2 33 0 22 0 0 0 chr4 18779220 18779242 -183549105 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr4 18780992 18781028 -183547319 + AT_rich Low_complexity Low_complexity 1 36 0 309 174 0 0 chr4 18781695 18781764 -183546583 + (CA)n Simple_repeat Simple_repeat 2 70 0 22 56 0 0 chr4 18783352 18783388 -183544959 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 18783783 18783804 -183544543 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr4 18784083 18784113 -183544234 + AT_rich Low_complexity Low_complexity 1 30 0 971 298 67 28 chr4 18785224 18785891 -183542456 - L2 LINE L2 -9 3304 2620 589 301 58 108 chr4 18785886 18786265 -183542082 + L2 LINE L2 2909 3268 -4 * 300 345 113 47 chr4 18786475 18786794 -183541553 + L2 LINE L2 2887 3226 -46 302 277 71 0 chr4 18788117 18788258 -183540089 - L1MC/D LINE L1 -2028 5780 5630 348 273 39 31 chr4 18789177 18789305 -183539042 - MIR SINE MIR -14 248 120 537 185 9 9 chr4 18789320 18789428 -183538919 + FLAM_A SINE Alu 31 138 -4 269 274 218 6 chr4 18789428 18789607 -183538740 + L1ME4a LINE L1 5573 5789 -332 304 224 77 84 chr4 18789762 18789905 -183538442 + L1ME4a LINE L1 5880 6021 -100 2427 87 0 3 chr4 18790259 18790569 -183537778 - AluSx SINE Alu -1 311 3 344 263 152 70 chr4 18791114 18791285 -183537062 - L1ME3A LINE L1 -31 6139 5955 287 308 11 0 chr4 18791289 18791380 -183536967 + L1ME LINE L1 5610 5701 -420 2193 117 0 0 chr4 18791861 18792160 -183536187 - AluSx SINE Alu -13 299 1 419 172 0 86 chr4 18792186 18792279 -183536068 - Tigger5 DNA MER2_type -7 2316 2232 326 200 0 0 chr4 18792276 18792331 -183536016 - Tigger5 DNA MER2_type -2268 55 1 * 1635 196 138 22 chr4 18792422 18792880 -183535467 - Charlie1b DNA MER1_type -8 515 5 234 283 193 7 chr4 18792894 18793039 -183535308 - L1MC4 LINE L1 -547 7495 7324 203 61 30 0 chr4 18793071 18793104 -183535243 + (TA)n Simple_repeat Simple_repeat 1 34 0 2558 131 86 22 chr4 18793111 18793659 -183534688 - L1MA6 LINE L1 0 6300 5718 3297 184 45 3 chr4 18793659 18794310 -183534037 - L1MB8 LINE L1 -61 6117 5440 2059 119 7 0 chr4 18794310 18794643 -183533704 - AluSq SINE Alu 0 335 1 4538 89 50 51 chr4 18794660 18795420 -183532927 - L1MA3 LINE L1 -1 6304 5546 1162 269 129 48 chr4 18795433 18797229 -183531118 - L1MC4 LINE L1 -762 7199 5263 328 345 102 35 chr4 18797380 18797661 -183530686 - L2 LINE L2 -280 3033 2741 1422 113 18 5 chr4 18797871 18798092 -183530255 + Tigger4(Zombi) DNA MER2_type 2506 2729 -2 527 344 27 54 chr4 18798388 18798612 -183529735 + L2 LINE L2 2889 3106 -207 878 257 67 6 chr4 18798659 18799001 -183529346 + L1MEd LINE L1 895 1257 -4862 201 213 21 0 chr4 18799417 18799464 -183528883 + A-rich Low_complexity Low_complexity 1 48 0 184 409 151 5 chr4 18800139 18800325 -183528022 - L2 LINE L2 -379 2935 2723 221 226 94 0 chr4 18801131 18801184 -183527163 + L2 LINE L2 1915 1972 -1342 22 0 0 0 chr4 18801195 18801217 -183527130 + AT_rich Low_complexity Low_complexity 1 22 0 199 349 45 0 chr4 18801220 18801286 -183527061 - L2 LINE L2 -37 3276 3208 265 342 121 9 chr4 18801791 18802022 -183526325 + L3 LINE CR1 1084 1340 -237 191 236 73 0 chr4 18802035 18802090 -183526257 + L3 LINE CR1 1207 1265 -312 230 356 10 20 chr4 18802195 18802296 -183526051 + L3 LINE CR1 1453 1552 -25 300 331 139 7 chr4 18802552 18803150 -183525197 - L1MC4 LINE L1 -1082 5064 4388 280 297 194 3 chr4 18803301 18803584 -183524763 - L1MC4 LINE L1 -2158 3988 3652 1054 240 100 14 chr4 18803775 18804134 -183524213 + Charlie7 DNA MER1_type 334 723 -1889 204 345 0 12 chr4 18804393 18804477 -183523870 + L2 LINE L2 2808 2890 -424 344 152 76 0 chr4 18804505 18804584 -183523763 + Charlie7 DNA MER1_type 548 632 -1980 2403 75 10 0 chr4 18804749 18805042 -183523305 - AluSc SINE Alu -13 296 1 568 257 84 26 chr4 18805078 18805304 -183523043 - L3 LINE CR1 -118 1459 1221 21 0 0 0 chr4 18805769 18805790 -183522557 + AT_rich Low_complexity Low_complexity 1 21 0 347 311 72 48 chr4 18807136 18807192 -183521155 - MER5B DNA MER1_type -7 171 118 1988 119 3 13 chr4 18807192 18807529 -183520818 + AluSc SINE Alu 1 309 0 347 311 72 48 chr4 18807529 18807639 -183520708 - MER5B DNA MER1_type -60 118 1 27 0 0 0 chr4 18807745 18807772 -183520575 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr4 18807913 18807952 -183520395 + AT_rich Low_complexity Low_complexity 1 39 0 228 283 0 33 chr4 18808177 18808237 -183520110 - MIR SINE MIR -184 78 21 897 136 15 80 chr4 18808380 18808579 -183519768 - MER30B DNA MER1_type -4 186 1 2211 100 3 7 chr4 18808781 18809080 -183519267 - AluSp SINE Alu -15 298 1 24 53 0 0 chr4 18809533 18809571 -183518776 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr4 18810150 18810179 -183518168 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr4 18810607 18810646 -183517701 + AT_rich Low_complexity Low_complexity 1 39 0 416 231 137 8 chr4 18811507 18811624 -183516723 + MER46C DNA MER2_type 172 303 -35 489 267 25 91 chr4 18811735 18811965 -183516382 + MIR SINE MIR 42 260 -2 2036 127 16 0 chr4 18812049 18812372 -183515975 + HSMAR2 DNA Mariner 1 328 -974 6272 124 32 3 chr4 18813790 18814749 -183513598 + HSMAR2 DNA Mariner 315 1301 -1 441 262 51 50 chr4 18815603 18815796 -183512551 + MLT1F LTR MaLR 14 208 -382 326 350 0 8 chr4 18815800 18815917 -183512430 + CT-rich Low_complexity Low_complexity 1 116 0 713 280 123 8 chr4 18815944 18816212 -183512135 + MLT1F LTR MaLR 236 534 -8 233 308 0 0 chr4 18816216 18816294 -183512053 + MLT1F-int LTR MaLR 1 78 -1293 396 272 44 7 chr4 18816457 18816593 -183511754 + MLT1F-int LTR MaLR 399 539 -832 2104 137 42 65 chr4 18816593 18816689 -183511658 + MSTB LTR MaLR 1 98 -328 2110 172 69 14 chr4 18816689 18817126 -183511221 + LOR1b LTR ERV1 1 461 0 2104 137 42 65 chr4 18817126 18817392 -183510955 + MSTB LTR MaLR 98 356 -70 1747 161 45 0 chr4 18817392 18817684 -183510663 - AluSx SINE Alu -7 305 1 2104 137 42 65 chr4 18817684 18817721 -183510626 + MSTB LTR MaLR 356 392 -34 1433 126 28 0 chr4 18817721 18817936 -183510411 - AluSg/x SINE Alu -6 304 84 197 33 33 0 chr4 18817937 18817967 -183510380 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 1969 108 26 0 chr4 18817967 18818236 -183510111 - AluSx SINE Alu -31 281 6 244 191 0 0 chr4 18818238 18818280 -183510067 + MSTB LTR MaLR 387 428 0 300 254 0 0 chr4 18818281 18818352 -183509995 + MLT1F-int LTR MaLR 536 606 -765 485 144 8 136 chr4 18818528 18818660 -183509687 + L1M4 LINE L1 101 215 -6327 324 0 0 0 chr4 18818689 18818725 -183509622 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 3211 219 55 24 chr4 18818770 18819712 -183508635 + L1M4 LINE L1 784 1836 -4808 1061 289 24 17 chr4 18819735 18820199 -183508148 + L1M4 LINE L1 3728 4194 -2450 897 142 34 0 chr4 18820223 18820371 -183507976 - Tigger1 DNA MER2_type -14 2404 2252 1265 169 59 24 chr4 18820382 18820637 -183507710 + MER21A LTR ERV1 1 264 -667 2059 164 221 15 chr4 18820642 18821098 -183507249 + MER21A LTR ERV1 376 925 -6 6173 116 19 22 chr4 18821105 18821760 -183506587 - Tigger1 DNA MER2_type -175 2243 1590 2073 114 3 32 chr4 18821760 18822075 -183506272 - AluSc SINE Alu -3 306 1 6173 116 19 22 chr4 18822075 18822397 -183505950 - Tigger1 DNA MER2_type -828 1590 1269 1911 167 63 35 chr4 18822398 18822929 -183505418 + MLT2A2 LTR ERVL 1 554 0 6135 143 44 43 chr4 18822929 18823831 -183504516 + HERVL-A2 LTR ERVL 1 901 -4863 180 196 87 120 chr4 18823831 18823923 -183504424 + MER5C DNA MER1_type 10 98 -226 6135 143 44 43 chr4 18823923 18824109 -183504238 + HERVL-A2 LTR ERVL 901 1085 -4679 2123 109 0 0 chr4 18824109 18824385 -183503962 + AluSx SINE Alu 1 276 -36 6135 143 44 43 chr4 18824385 18824608 -183503739 + HERVL-A2 LTR ERVL 1085 1401 -4363 381 89 0 0 chr4 18824612 18824668 -183503679 - HERVL LTR ERVL -1725 3929 3874 13797 94 14 7 chr4 18824696 18826333 -183502014 + HERVL-A2 LTR ERVL 3741 5395 -259 2357 88 0 31 chr4 18826333 18826652 -183501695 + AluSc SINE Alu 1 309 0 13797 94 14 7 chr4 18826652 18826914 -183501433 + HERVL-A2 LTR ERVL 5395 5654 0 2062 176 31 52 chr4 18826914 18827492 -183500855 + MLT2A2 LTR ERVL 1 554 0 * 7060 154 43 19 chr4 18827492 18828731 -183499616 - Tigger1 DNA MER2_type -1146 1272 3 5330 200 38 56 chr4 18828746 18828867 -183499480 + L1M4 LINE L1 4234 4356 -2326 1746 172 0 20 chr4 18828867 18829170 -183499177 + AluJb SINE Alu 1 297 -15 5330 200 38 56 chr4 18829170 18830962 -183497385 + L1M4 LINE L1 4356 6105 -577 585 216 0 9 chr4 18830963 18831079 -183497268 + FLAM_A SINE Alu 1 115 -18 371 258 30 23 chr4 18831103 18831235 -183497112 - L1P LINE L1 -1989 4157 4025 329 309 155 10 chr4 18831281 18831475 -183496872 - L1MDa LINE L1 -2230 4196 3975 284 118 59 0 chr4 18831482 18831533 -183496814 + L1M4 LINE L1 5400 5453 -725 524 300 90 50 chr4 18831588 18832597 -183495750 - L1MDa LINE L1 -2504 3922 2873 816 259 10 5 chr4 18833398 18833591 -183494756 + MER58A DNA MER1_type 26 219 -5 362 309 97 26 chr4 18833597 18833908 -183494439 - HAL1b LINE L1 -731 617 285 351 256 80 144 chr4 18833947 18834426 -183493921 - L1MDa LINE L1 -1173 1614 976 1172 205 39 11 chr4 18834841 18835124 -183493223 + L1MC2 LINE L1 6025 6315 -29 2073 166 35 53 chr4 18836123 18836557 -183491790 + MSTB LTR MaLR 1 426 0 205 365 61 50 chr4 18837042 18837223 -183491124 - MIR3 SINE MIR -7 201 19 27 49 0 0 chr4 18838634 18838675 -183489672 + AT_rich Low_complexity Low_complexity 1 41 0 2433 72 0 7 chr4 18838742 18839049 -183489298 - AluSp SINE Alu -8 305 1 2406 76 13 0 chr4 18839152 18839455 -183488892 - AluSp SINE Alu -6 307 1 1282 221 43 37 chr4 18839770 18840285 -183488062 + L1ME LINE L1 5236 5597 -567 430 193 0 47 chr4 18840636 18840807 -183487540 + (TA)n Simple_repeat Simple_repeat 1 163 0 235 205 115 0 chr4 18840810 18840888 -183487459 + L1MC4 LINE L1 6617 6703 -1339 240 130 0 0 chr4 18840894 18840940 -183487407 - LTR66 LTR ERVL -171 439 394 1181 221 70 92 chr4 18841044 18841542 -183486805 - Charlie4a DNA MER1_type -3 505 19 1494 85 0 0 chr4 18841837 18842025 -183486322 + AluY SINE Alu 1 188 -123 226 213 0 33 chr4 18842026 18842087 -183486260 + (TA)n Simple_repeat Simple_repeat 1 59 0 959 126 0 0 chr4 18842087 18842214 -183486133 + AluY SINE Alu 168 294 -17 2189 143 6 18 chr4 18843514 18843856 -183484491 + MER1B DNA MER1_type 2 339 0 704 83 16 25 chr4 18844961 18845082 -183483265 - L1MA2 LINE L1 -158 6146 6027 * 1547 157 69 50 chr4 18845068 18845431 -183482916 - L1MC4a LINE L1 -728 7080 6711 687 138 0 9 chr4 18845533 18845642 -183482705 - MLT1A1 LTR MaLR 0 365 258 3478 172 28 77 chr4 18847617 18848438 -183479909 + L1MA7 LINE L1 5509 6289 -2 246 327 133 0 chr4 18849092 18849205 -183479142 - L2 LINE L2 -7 3265 3138 253 314 48 48 chr4 18849527 18849737 -183478610 - L2 LINE L2 -1201 2113 1904 550 228 118 121 chr4 18852216 18852572 -183475775 + L2 LINE L2 2958 3312 -1 2456 50 0 0 chr4 18853157 18853457 -183474890 - AluY SINE Alu -11 300 1 4063 131 0 29 chr4 18853465 18854153 -183474194 - L1PA13 LINE L1 -5 6158 5491 2678 299 126 22 chr4 18854459 18854624 -183473723 - L2 LINE L2 -4 3309 3163 2324 64 0 0 chr4 18854624 18854940 -183473407 + AluY SINE Alu 1 316 0 2678 299 126 22 chr4 18854940 18856157 -183472190 - L2 LINE L2 -150 3163 1789 412 241 129 41 chr4 18856158 18856328 -183472019 - L2 LINE L2 -12 3301 3117 643 357 33 7 chr4 18856420 18856692 -183471655 - L2 LINE L2 -2111 1203 925 5687 126 42 11 chr4 18856706 18857675 -183470672 + L1MA4A LINE L1 5302 6300 -3 766 318 193 12 chr4 18857686 18858324 -183470023 - L2 LINE L2 -2405 909 157 392 252 70 9 chr4 18859507 18859622 -183468725 - L2 LINE L2 0 3313 3192 248 245 137 20 chr4 18860167 18860269 -183468078 + MIR SINE MIR 101 214 -48 533 216 45 0 chr4 18861385 18861496 -183466851 - FLAM_A SINE Alu -17 116 1 21 0 0 0 chr4 18863874 18863895 -183464452 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr4 18864358 18864393 -183463954 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 18865244 18865266 -183463081 + AT_rich Low_complexity Low_complexity 1 22 0 272 313 125 0 chr4 18866426 18866538 -183461809 + MIR SINE MIR 63 188 -74 300 226 108 0 chr4 18866839 18866932 -183461415 - L1ME4a LINE L1 -58 6063 5961 973 240 39 35 chr4 18866952 18867290 -183461057 + L1MC2 LINE L1 3199 3537 -2609 4266 182 85 8 chr4 18867377 18868306 -183460041 + L1MC2 LINE L1 5334 7995 0 278 234 32 43 chr4 18868378 18868472 -183459875 - L1ME4a LINE L1 -2007 5801 5709 273 167 3 6 chr4 18868526 18868586 -183459761 + MADE1 DNA Mariner 1 49 -31 2324 109 3 0 chr4 18868588 18868899 -183459448 - AluSq SINE Alu -1 312 1 344 111 0 0 chr4 18868943 18868997 -183459350 - MADE1 DNA Mariner -26 54 1 1021 196 80 5 chr4 18869334 18869644 -183458703 - MER58B DNA MER1_type 0 341 1 986 172 48 5 chr4 18870789 18870998 -183457349 + AluSx SINE Alu 1 218 -94 22 35 0 0 chr4 18872951 18872980 -183455367 + AT_rich Low_complexity Low_complexity 1 29 0 246 263 12 12 chr4 18873013 18873093 -183455254 - L1ME4a LINE L1 -71 6050 5971 25 0 0 0 chr4 18873250 18873275 -183455072 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr4 18873612 18873645 -183454702 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr4 18873692 18873721 -183454626 + AT_rich Low_complexity Low_complexity 1 29 0 244 198 52 52 chr4 18874269 18874385 -183453962 + (TTTAA)n Simple_repeat Simple_repeat 1 116 0 28 105 0 0 chr4 18874453 18874558 -183453789 + AT_rich Low_complexity Low_complexity 1 105 0 24 0 0 0 chr4 18874638 18874662 -183453685 + AT_rich Low_complexity Low_complexity 1 24 0 350 288 53 12 chr4 18875609 18875779 -183452568 + MER104 DNA MER2_type 4 180 0 227 287 73 20 chr4 18876068 18876218 -183452129 - L1MEd LINE L1 -4992 1127 970 459 234 63 13 chr4 18876251 18876409 -183451938 - L1ME1 LINE L1 -5 6161 5996 2177 249 104 34 chr4 18876437 18877238 -183451109 - L1MEc LINE L1 -2454 3761 2869 2186 110 3 3 chr4 18877238 18877539 -183450808 - AluSx SINE Alu -11 301 1 2177 249 104 34 chr4 18877539 18877776 -183450571 - L1MEc LINE L1 -3346 2869 2650 1037 253 89 21 chr4 18877793 18878371 -183449976 - L1MEc LINE L1 -3667 2548 1980 21 71 0 0 chr4 18878404 18878446 -183449901 + AT_rich Low_complexity Low_complexity 1 42 0 329 299 86 33 chr4 18878549 18878793 -183449554 - L1MEc LINE L1 -4755 1641 1385 1026 207 173 95 chr4 18878849 18879836 -183448511 - L1ME1 LINE L1 -187 5977 4906 938 350 65 73 chr4 18879827 18880157 -183448190 - L1MEc LINE L1 -5370 1026 695 * 1256 199 67 11 chr4 18880157 18880439 -183447908 + AluJo SINE Alu 1 298 -14 938 350 65 73 chr4 18880439 18880859 -183447488 - L1MEc LINE L1 -5701 695 283 1890 36 76 0 chr4 18880859 18881108 -183447239 - L1PA4 LINE L1 0 6155 5888 938 350 65 73 chr4 18881108 18881354 -183446993 - L1MEc LINE L1 -6113 283 37 23 54 0 0 chr4 18881462 18881499 -183446848 + AT_rich Low_complexity Low_complexity 1 37 0 1552 214 84 41 chr4 18881679 18882142 -183446205 + MLT1D LTR MaLR 22 504 -1 1922 143 56 6 chr4 18882628 18882949 -183445398 + MER1B DNA MER1_type 1 337 0 360 303 119 27 chr4 18883010 18883380 -183444967 - L1MC/D LINE L1 -2005 5803 5400 1278 159 99 44 chr4 18883419 18883671 -183444676 + AluJb SINE Alu 1 266 -46 18669 200 17 7 chr4 18883688 18884044 -183444303 - L1PA13 LINE L1 -2 6864 6513 414 0 0 0 chr4 18884044 18884090 -183444257 + (TG)n Simple_repeat Simple_repeat 2 47 0 18669 200 17 7 chr4 18884090 18888721 -183439626 - L1PA13 LINE L1 -353 6513 1852 240 245 109 34 chr4 18888723 18888870 -183439477 - L1MC/D LINE L1 -815 5331 5174 2660 176 121 3 chr4 18889159 18889891 -183438456 - L1MB7 LINE L1 -11 6173 5184 1952 110 75 23 chr4 18889896 18890242 -183438105 + THE1B LTR MaLR 1 364 0 882 183 39 22 chr4 18890242 18890422 -183437925 - AluJo SINE Alu -34 278 96 2042 115 10 0 chr4 18890649 18890937 -183437410 + AluSx SINE Alu 1 291 -21 1176 202 143 75 chr4 18891666 18892042 -183436305 - MLT1E3 LTR MaLR 0 624 210 2409 66 0 3 chr4 18892042 18892344 -183436003 - AluY SINE Alu -10 301 1 1176 202 143 75 chr4 18892344 18892422 -183435925 - MLT1E3 LTR MaLR -414 210 139 288 289 0 0 chr4 18892513 18892589 -183435758 - Charlie7 DNA MER1_type -1949 663 588 25 0 0 0 chr4 18893044 18893069 -183435278 + AT_rich Low_complexity Low_complexity 1 25 0 2086 138 47 14 chr4 18894016 18894379 -183433968 - THE1C LTR MaLR 0 375 1 275 348 28 35 chr4 18894924 18895065 -183433282 - L2 LINE L2 -241 3031 2892 23 24 0 24 chr4 18895133 18895157 -183433190 + AT_rich Low_complexity Low_complexity 1 25 -15 1992 116 10 10 chr4 18895157 18895450 -183432897 - AluSx SINE Alu -19 293 1 23 24 0 24 chr4 18895450 18895466 -183432881 + AT_rich Low_complexity Low_complexity 25 40 0 231 355 113 38 chr4 18895557 18895948 -183432399 - L2 LINE L2 -498 2816 2397 244 233 196 38 chr4 18896610 18896743 -183431604 - L2 LINE L2 -2 3311 3158 320 309 122 7 chr4 18896745 18896884 -183431463 + L2 LINE L2 3156 3310 -3 518 212 88 0 chr4 18897312 18897425 -183430922 + MER20 DNA MER1_type 95 217 -2 233 231 118 91 chr4 18897769 18897955 -183430392 + MIR SINE MIR 29 219 -43 2988 122 160 29 chr4 18899874 18900635 -183427712 - Tigger3b DNA MER2_type -1803 1226 566 1687 177 13 3 chr4 18900635 18900935 -183427412 + AluJb SINE Alu 4 306 -6 342 67 0 0 chr4 18900935 18900980 -183427367 + (TA)n Simple_repeat Simple_repeat 2 46 0 2988 122 160 29 chr4 18900980 18901140 -183427207 - Tigger3b DNA MER2_type -2463 566 428 2262 67 7 3 chr4 18901140 18901439 -183426908 + AluY SINE Alu 1 300 -11 2988 122 160 29 chr4 18901439 18901558 -183426789 - Tigger3b DNA MER2_type -2601 428 2 215 186 70 0 chr4 18902137 18902180 -183426167 - L2 LINE L2 0 3313 3268 1129 243 116 32 chr4 18902446 18902879 -183425468 + L1ME3A LINE L1 5685 6153 -17 896 212 0 0 chr4 18902993 18903158 -183425189 + FRAM SINE Alu 1 165 -1 315 234 99 54 chr4 18903180 18903291 -183425056 + MIR SINE MIR 147 262 0 181 442 18 6 chr4 18903346 18903511 -183424836 - L2 LINE L2 -459 2855 2689 200 347 42 0 chr4 18903660 18903732 -183424615 - MIR SINE MIR -159 103 29 21 36 0 0 chr4 18903802 18903830 -183424517 + AT_rich Low_complexity Low_complexity 1 28 0 205 321 0 0 chr4 18903868 18903949 -183424398 + (TA)n Simple_repeat Simple_repeat 2 82 0 24 53 0 0 chr4 18904602 18904640 -183423707 + AT_rich Low_complexity Low_complexity 1 38 0 407 327 170 28 chr4 18905128 18905492 -183422855 - L2 LINE L2 -560 2754 2339 401 57 0 0 chr4 18905496 18905549 -183422798 - MADE1 DNA Mariner 0 80 28 2107 164 28 17 chr4 18906236 18906596 -183421751 - THE1B LTR MaLR 0 364 1 11179 92 20 13 chr4 18906596 18906896 -183421451 - THE1B-int LTR MaLR 0 1580 1284 2214 96 17 3 chr4 18906896 18907187 -183421160 - AluSq SINE Alu -18 295 1 11179 92 20 13 chr4 18907187 18908455 -183419892 - THE1B-int LTR MaLR -296 1284 1 2286 136 28 17 chr4 18908455 18908815 -183419532 - THE1B LTR MaLR 0 364 1 315 258 32 32 chr4 18909077 18909170 -183419177 + L2 LINE L2 2669 2761 -553 21 0 0 0 chr4 18909292 18909313 -183419034 + AT_rich Low_complexity Low_complexity 1 21 0 737 251 64 5 chr4 18910500 18910703 -183417644 + MIR SINE MIR 48 262 0 283 232 192 0 chr4 18910887 18911012 -183417335 - L1MC4 LINE L1 -141 7901 7753 * 685 219 202 8 chr4 18911010 18911248 -183417099 - L1MC4 LINE L1 -1278 6764 6481 22 0 0 0 chr4 18911986 18912008 -183416339 + AT_rich Low_complexity Low_complexity 1 22 0 495 186 0 0 chr4 18912331 18912433 -183415914 + (TATG)n Simple_repeat Simple_repeat 2 103 0 2162 94 3 11 chr4 18912434 18912721 -183415626 - AluSx SINE Alu -27 285 1 21 0 0 0 chr4 18913394 18913415 -183414932 + AT_rich Low_complexity Low_complexity 1 21 0 1005 205 93 0 chr4 18913616 18913821 -183414526 + MER58A DNA MER1_type 1 224 0 770 289 81 78 chr4 18914842 18915409 -183412938 + L2 LINE L2 1689 2257 -1057 1938 138 17 0 chr4 18915787 18916078 -183412269 - AluSx SINE Alu -16 296 1 516 290 172 0 chr4 18918148 18918369 -183409978 - MIR SINE MIR -1 261 3 675 188 196 30 chr4 18918488 18918766 -183409581 + MER33 DNA MER1_type 1 363 0 2842 215 117 26 chr4 18918910 18920053 -183408294 + L1MC4 LINE L1 6707 8042 0 244 238 0 48 chr4 18920829 18920892 -183407455 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 1613 121 9 0 chr4 18921100 18921331 -183407016 + AluSg/x SINE Alu 74 306 -6 205 161 0 0 chr4 18922712 18922743 -183405604 + (TG)n Simple_repeat Simple_repeat 2 32 0 21 89 0 0 chr4 18922964 18923020 -183405327 + GC_rich Low_complexity Low_complexity 1 56 0 26 0 0 0 chr4 18923418 18923444 -183404903 + GC_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr4 18923531 18923562 -183404785 + GC_rich Low_complexity Low_complexity 1 31 0 306 73 0 0 chr4 18923661 18923702 -183404645 + (CGG)n Simple_repeat Simple_repeat 3 43 0 230 271 8 82 chr4 18924738 18924860 -183403487 + L2 LINE L2 3156 3268 -4 894 266 76 58 chr4 18925424 18925819 -183402528 - MLT1I LTR MaLR -3 406 5 224 91 23 0 chr4 18926040 18926084 -183402263 + (TC)n Simple_repeat Simple_repeat 2 46 0 216 67 0 0 chr4 18926084 18926114 -183402233 + (CA)n Simple_repeat Simple_repeat 1 30 0 1813 199 50 11 chr4 18926143 18926524 -183401823 - MSTD LTR MaLR 0 396 1 422 251 87 135 chr4 18926723 18927070 -183401277 - MLT1I LTR MaLR 0 409 80 1172 266 87 42 chr4 18927073 18927592 -183400755 - MLT1H LTR MaLR 0 549 8 2336 102 0 0 chr4 18927955 18928258 -183400089 + AluSq SINE Alu 1 303 -10 280 264 73 9 chr4 18928400 18928510 -183399837 - MLT1G LTR MaLR 0 590 433 24 0 0 0 chr4 18929271 18929295 -183399052 + AT_rich Low_complexity Low_complexity 1 24 0 588 309 39 0 chr4 18930468 18930649 -183397698 - MIR3 SINE MIR -5 203 16 354 280 6 95 chr4 18930683 18930851 -183397496 - MIR SINE MIR -59 203 51 23 33 0 0 chr4 18932067 18932097 -183396250 + AT_rich Low_complexity Low_complexity 1 30 0 1508 106 59 75 chr4 18932247 18932569 -183395778 + THE1C LTR MaLR 4 320 -55 479 108 0 155 chr4 18932584 18932713 -183395634 - MSTA LTR MaLR -319 109 1 486 324 134 56 chr4 18932802 18933123 -183395224 + HAL1 LINE L1 306 651 -1856 2245 259 111 37 chr4 18933125 18934247 -183394100 + HAL1 LINE L1 743 1947 -560 242 235 39 0 chr4 18934375 18934426 -183393921 + L2 LINE L2 3205 3257 -15 186 103 0 0 chr4 18934428 18934457 -183393890 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 241 203 29 43 chr4 18934488 18934557 -183393790 + L2 LINE L2 3205 3272 0 644 282 180 53 chr4 18934585 18934673 -183393674 - MLT1K LTR MaLR 0 588 513 1582 142 75 19 chr4 18934673 18934940 -183393407 + AluSx SINE Alu 1 282 -30 261 0 0 0 chr4 18934949 18934978 -183393369 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 644 282 180 53 chr4 18934978 18935390 -183392957 - MLT1K LTR MaLR -81 507 13 893 188 109 43 chr4 18935569 18935872 -183392475 - MER33 DNA MER1_type -1 323 1 23 0 0 0 chr4 18936612 18936635 -183391712 + AT_rich Low_complexity Low_complexity 1 23 0 212 352 42 0 chr4 18936917 18936988 -183391359 - L2 LINE L2 -8 3264 3191 484 331 23 0 chr4 18937092 18937267 -183391080 + MLT1K LTR MaLR 84 262 -326 2188 127 36 33 chr4 18937308 18937671 -183390676 - THE1B LTR MaLR 0 364 1 318 326 27 48 chr4 18938299 18938446 -183389901 - HAL1 LINE L1 -3 2504 2361 2130 113 0 3 chr4 18938465 18938773 -183389574 + AluSx SINE Alu 1 307 0 2144 155 26 5 chr4 18938993 18939374 -183388973 + MLT1B LTR MaLR 1 389 -1 249 262 71 44 chr4 18939397 18939580 -183388767 - HAL1b LINE L1 -412 936 749 539 296 84 37 chr4 18939913 18940158 -183388189 - HAL1 LINE L1 -757 1750 1518 1741 191 74 29 chr4 18940158 18940535 -183387812 - MSTD LTR MaLR -2 394 1 539 296 84 37 chr4 18940535 18941229 -183387118 - HAL1 LINE L1 -989 1518 733 367 77 15 15 chr4 18941336 18941401 -183386946 + (TC)n Simple_repeat Simple_repeat 1 65 0 236 163 0 0 chr4 18941590 18941633 -183386714 - MLT1I LTR MaLR -267 142 100 802 171 43 0 chr4 18941836 18941976 -183386371 + FRAM SINE Alu 1 146 -30 339 65 0 0 chr4 18941978 18942024 -183386323 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 957 204 0 0 chr4 18942415 18942582 -183385765 + AluJb SINE Alu 130 296 -16 1171 236 57 9 chr4 18943107 18943438 -183384909 - MLT1C LTR MaLR 0 467 121 451 311 102 11 chr4 18943535 18943712 -183384635 - MER91A DNA MER1_type -1 195 3 232 235 12 99 chr4 18943833 18943914 -183384433 - L2 LINE L2 0 3313 3240 259 277 30 10 chr4 18944293 18944394 -183383953 + MARNA DNA Mariner 477 579 -7 344 219 86 33 chr4 18944639 18944798 -183383549 + L1M4 LINE L1 4357 4539 -1607 413 287 79 30 chr4 18945301 18945503 -183382844 - L2 LINE L2 -94 3219 3008 24 0 0 0 chr4 18945737 18945761 -183382586 + AT_rich Low_complexity Low_complexity 1 24 0 2535 202 86 17 chr4 18946045 18946629 -183381718 + MLT1E3 LTR MaLR 1 624 0 574 278 129 31 chr4 18947060 18947599 -183380748 - L1ME3A LINE L1 -219 5951 5317 2144 111 7 7 chr4 18947599 18947896 -183380451 - AluSx SINE Alu -15 297 1 574 278 129 31 chr4 18947896 18948052 -183380295 - L1ME3A LINE L1 -853 5317 5178 1487 220 11 35 chr4 18948062 18948434 -183379913 + MLT1A2 LTR MaLR 12 374 0 827 256 57 60 chr4 18948434 18949016 -183379331 - L1ME3A LINE L1 -963 5183 4604 469 275 58 34 chr4 18949039 18949453 -183378894 - L1MC5 LINE L1 -49 7912 7489 634 344 113 40 chr4 18949883 18950701 -183377646 - L2 LINE L2 -452 2862 1986 832 198 8 16 chr4 18950701 18950885 -183377462 - MLT1B LTR MaLR -1 395 207 288 141 118 118 chr4 18950876 18950961 -183377386 - MLT1B LTR MaLR -305 85 1 * 301 384 25 12 chr4 18950961 18951206 -183377141 - L2 LINE L2 -1323 1991 1744 2112 119 46 98 chr4 18951438 18951790 -183376557 - MLT1C LTR MaLR -12 455 133 1798 170 0 3 chr4 18951790 18952079 -183376268 - AluSx SINE Alu -24 288 1 2112 119 46 98 chr4 18952079 18952206 -183376141 - MLT1C LTR MaLR -334 133 1 288 316 105 8 chr4 18952214 18952347 -183376000 - L2 LINE L2 -493 2821 2676 1773 164 7 11 chr4 18952402 18952689 -183375658 + AluJb SINE Alu 5 290 -22 1814 184 105 77 chr4 18953310 18953814 -183374533 + MLT2B1 LTR ERVL 1 518 -2 239 244 44 49 chr4 18954076 18954265 -183374082 + LTR67 LTR ERVL 356 534 -23 272 332 121 36 chr4 18954321 18954710 -183373637 - L2 LINE L2 -962 2352 1931 214 298 0 0 chr4 18954859 18954916 -183373431 - MIR SINE MIR -148 114 58 1803 131 45 63 chr4 18954951 18955333 -183373014 + THE1C LTR MaLR 1 375 0 587 317 18 22 chr4 18955909 18956133 -183372214 + MIR SINE MIR 31 253 -9 24 0 0 0 chr4 18956944 18956968 -183371379 + AT_rich Low_complexity Low_complexity 1 24 0 444 180 40 0 chr4 18957180 18957280 -183371067 - L1MA9 LINE L1 -2 6310 6207 518 124 11 0 chr4 18957329 18957418 -183370929 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 191 317 49 12 chr4 18958217 18958299 -183370048 - L2 LINE L2 -50 3263 3179 289 291 103 34 chr4 18958632 18958807 -183369540 - MIR SINE MIR -56 206 20 2049 130 0 13 chr4 18959236 18959536 -183368811 + AluSx SINE Alu 1 296 -16 30 27 0 0 chr4 18960079 18960116 -183368231 + AT_rich Low_complexity Low_complexity 1 37 0 25 65 0 0 chr4 18960501 18960547 -183367800 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr4 18960671 18960693 -183367654 + AT_rich Low_complexity Low_complexity 1 22 0 279 156 0 0 chr4 18960815 18960860 -183367487 - MLT2B2 LTR ERVL -1 514 470 2065 227 45 22 chr4 18960910 18961373 -183366974 - MLT2B2 LTR ERVL -41 474 1 26 30 0 0 chr4 18961409 18961442 -183366905 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr4 18961647 18961681 -183366666 + AT_rich Low_complexity Low_complexity 1 34 0 2585 207 81 7 chr4 18961711 18962314 -183366033 + MER82 DNA MER2_type 2 649 -4 392 288 131 38 chr4 18962567 18962880 -183365467 - HAL1 LINE L1 -936 1571 1230 1956 189 57 47 chr4 18963065 18963454 -183364893 - L1M4 LINE L1 -1150 5494 5097 1904 149 28 0 chr4 18963454 18963736 -183364611 - AluSx SINE Alu -22 290 1 1956 189 57 47 chr4 18963736 18963837 -183364510 - L1M4 LINE L1 -1547 5097 4999 1013 285 12 12 chr4 18963816 18964146 -183364201 - L1M4 LINE L1 -2039 4605 4276 * 1266 188 59 49 chr4 18964162 18964450 -183363897 - AluJo SINE Alu -21 291 1 1580 218 69 17 chr4 18964450 18964972 -183363375 - L1M4 LINE L1 -3106 3538 2990 5584 225 62 40 chr4 18964987 18965831 -183362516 - L1M4 LINE L1 -4584 2062 1238 3003 187 21 44 chr4 18965831 18966445 -183361902 + MER77 LTR ERV1 2 601 -4 5584 225 62 40 chr4 18966445 18967607 -183360740 - L1M4 LINE L1 -5408 1238 16 2305 75 0 0 chr4 18968102 18968443 -183359904 - AluY SINE Alu 0 341 1 243 289 22 11 chr4 18968513 18968603 -183359744 + CT-rich Low_complexity Low_complexity 5 95 0 294 323 32 0 chr4 18968726 18968884 -183359463 + L1ME4a LINE L1 5758 5920 -201 1041 298 133 13 chr4 18969039 18969504 -183358843 + L2 LINE L2 2792 3311 -2 432 336 98 1 chr4 18969785 18970003 -183358344 - MIR SINE MIR -13 249 13 1221 239 91 48 chr4 18970007 18970619 -183357728 - L2 LINE L2 0 3313 2677 1385 251 89 8 chr4 18970622 18971017 -183357330 - L2 LINE L2 -929 2385 1959 1223 204 12 69 chr4 18971711 18972044 -183356303 + MLT2C1 LTR ERVL 36 349 -48 231 36 0 0 chr4 18972069 18972097 -183356250 + (CA)n Simple_repeat Simple_repeat 2 29 0 292 143 0 20 chr4 18972115 18972164 -183356183 + MLT2C1 LTR ERVL 350 397 0 310 402 96 4 chr4 18972309 18972558 -183355789 + L2 LINE L2 3001 3272 0 4585 133 81 83 chr4 18973368 18973715 -183354632 + L1MC3 LINE L1 6766 7112 -673 245 270 16 0 chr4 18973715 18973778 -183354569 + MLT1F1 LTR MaLR 35 98 -469 4585 133 81 83 chr4 18973778 18974389 -183353958 + L1MC3 LINE L1 7112 7784 -1 5272 88 58 11 chr4 18974394 18975214 -183353133 - L1MA3 LINE L1 0 6305 5447 5218 143 24 0 chr4 18975231 18976239 -183352108 + L1PA16 LINE L1 5130 6157 -9 1292 202 16 4 chr4 18976262 18976514 -183351833 - L1MB3 LINE L1 -147 6036 5782 194 128 26 0 chr4 18976772 18976811 -183351536 + GA-rich Low_complexity Low_complexity 5 44 0 279 0 0 0 chr4 18977561 18977592 -183350755 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 212 290 16 0 chr4 18977684 18977746 -183350601 + MIR SINE MIR 200 262 0 1507 228 171 16 chr4 18977809 18978354 -183349993 + LTR50 LTR ERVL 1 629 -166 342 274 69 0 chr4 18978496 18978598 -183349749 - MER63 DNA MER1_type -326 736 2 1888 153 0 17 chr4 18978792 18979080 -183349267 - AluJb SINE Alu -21 291 9 229 333 0 0 chr4 18979991 18980051 -183348296 - MIR SINE MIR -143 119 60 458 246 200 16 chr4 18980863 18981054 -183347293 + MIR SINE MIR 38 260 -2 709 185 7 174 chr4 18981510 18981780 -183346567 + MIR SINE MIR 13 237 -25 227 310 133 9 chr4 18981916 18982029 -183346318 - L2 LINE L2 -435 2879 2753 310 311 19 9 chr4 18982030 18982136 -183346211 - MER63A DNA MER1_type 0 210 104 1169 286 37 13 chr4 18982147 18982521 -183345826 - L2 LINE L2 -555 2759 2377 1992 158 21 34 chr4 18982614 18982993 -183345354 - MLT1A2 LTR MaLR 0 374 1 2330 84 0 10 chr4 18983216 18983513 -183344834 + AluY SINE Alu 4 297 -14 320 150 17 17 chr4 18983690 18983750 -183344597 + MIR SINE MIR 3 62 -200 633 281 35 30 chr4 18983751 18983954 -183344393 - MLT1I LTR MaLR -121 288 85 238 302 47 47 chr4 18984421 18984550 -183343797 + MIR SINE MIR 109 237 -25 345 318 27 18 chr4 18985913 18986023 -183342324 + MIR SINE MIR 81 191 -71 450 299 64 11 chr4 18986040 18986227 -183342120 - L2 LINE L2 -13 3300 3104 1942 163 46 14 chr4 18986230 18986652 -183341695 + MER31A LTR ERV1 1 447 -19 830 337 140 38 chr4 18986794 18987695 -183340652 - L2 LINE L2 -339 2975 1983 398 267 8 0 chr4 18987712 18987843 -183340504 + L1MB7 LINE L1 6035 6166 -18 6544 100 8 11 chr4 18987958 18990269 -183338078 + L1PA10 LINE L1 3781 6167 -1 23 0 0 0 chr4 18990420 18990443 -183337904 + AT_rich Low_complexity Low_complexity 1 23 0 1400 126 3 116 chr4 18990444 18990663 -183337684 - L1PB4 LINE L1 -15 6141 5962 1899 119 10 38 chr4 18990663 18990956 -183337391 - AluY SINE Alu -26 285 1 1400 126 3 116 chr4 18990956 18991030 -183337317 - L1PB4 LINE L1 -194 5962 5881 885 308 83 9 chr4 18991090 18991522 -183336825 + Charlie7 DNA MER1_type 56 519 -2093 567 224 32 68 chr4 18991632 18991851 -183336496 + Charlie7 DNA MER1_type 2170 2380 -232 21148 76 1 0 chr4 18992214 18994974 -183333373 + L1PA5 LINE L1 11 2773 -3373 21257 39 3 0 chr4 18995392 18998765 -183329582 + L1PA5 LINE L1 2777 6152 -2 361 298 100 32 chr4 18998790 18999069 -183329278 + L1ME4a LINE L1 5600 5897 -224 1679 271 48 57 chr4 18999485 19000153 -183328194 - L2 LINE L2 -41 3272 2622 2970 116 38 59 chr4 19000153 19000613 -183327734 + L1MB4 LINE L1 5608 6055 -125 2902 74 0 11 chr4 19000613 19000992 -183327355 - THE1C LTR MaLR 0 375 1 2970 116 38 59 chr4 19000992 19001110 -183327237 + L1MB4 LINE L1 6055 6174 -6 1679 271 48 57 chr4 19001110 19001434 -183326913 - L2 LINE L2 -691 2622 2297 207 209 0 0 chr4 19001585 19001628 -183326719 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3758 204 52 17 chr4 19003228 19004235 -183324112 - MER69 DNA AcHobo -34 2492 1451 1411 211 31 3 chr4 19004336 19004630 -183323717 - MER69 DNA AcHobo -2224 302 1 253 267 129 0 chr4 19005021 19005122 -183323225 + L2 LINE L2 3191 3304 -9 1124 244 50 0 chr4 19005193 19005435 -183322912 + MIR SINE MIR 8 261 -1 324 269 21 11 chr4 19005535 19005628 -183322719 - MIR3 SINE MIR -20 188 95 34 42 0 0 chr4 19006142 19006190 -183322157 + AT_rich Low_complexity Low_complexity 1 48 0 254 29 29 0 chr4 19006711 19006746 -183321601 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 32 0 0 0 chr4 19006850 19006882 -183321465 + AT_rich Low_complexity Low_complexity 1 32 0 319 24 0 0 chr4 19006882 19006924 -183321423 - L1PA6 LINE L1 -3 6151 6110 23 0 0 0 chr4 19006988 19007011 -183321336 + AT_rich Low_complexity Low_complexity 1 23 0 2276 119 0 0 chr4 19007922 19008232 -183320115 - AluSx SINE Alu -2 310 1 770 298 105 46 chr4 19008409 19008912 -183319435 + MLT1K LTR MaLR 20 552 -36 2017 166 49 32 chr4 19009075 19009597 -183318750 - MLT2A2 LTR ERVL -23 531 1 11286 86 5 5 chr4 19009597 19011069 -183317278 - HERVL-A2 LTR ERVL 0 5654 4183 300 317 0 0 chr4 19011108 19011190 -183317157 + L2 LINE L2 2891 2972 -300 496 256 60 8 chr4 19011532 19011665 -183316682 - MIR SINE MIR -73 189 50 635 311 27 23 chr4 19012955 19013215 -183315132 - MIR SINE MIR 0 262 2 452 258 129 54 chr4 19013314 19013500 -183314847 - MIR SINE MIR -44 218 19 23 0 0 0 chr4 19014074 19014097 -183314250 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 19014199 19014224 -183314123 + AT_rich Low_complexity Low_complexity 1 25 0 195 367 63 13 chr4 19015542 19015700 -183312647 + L2 LINE L2 3107 3272 0 251 157 20 0 chr4 19015796 19015847 -183312500 + GA-rich Low_complexity Low_complexity 6 57 0 600 243 85 23 chr4 19015857 19016034 -183312313 - MIR SINE MIR -16 246 59 398 248 26 26 chr4 19017240 19017353 -183310994 - LTR67 LTR ERVL -419 138 26 190 227 23 0 chr4 19017605 19017649 -183310698 - L2 LINE L2 -12 3260 3216 332 299 104 19 chr4 19017654 19017808 -183310539 + MIR SINE MIR 13 179 -83 229 289 134 0 chr4 19017915 19018012 -183310335 - MIR SINE MIR -131 131 22 426 39 0 0 chr4 19018378 19018430 -183309917 + (TA)n Simple_repeat Simple_repeat 1 52 0 2124 148 0 66 chr4 19019156 19019594 -183308753 + L1MA5 LINE L1 5892 6300 0 5231 41 6 0 chr4 19021840 19022500 -183305847 + L1PA5 LINE L1 5498 6161 0 469 244 0 0 chr4 19022943 19023058 -183305289 + L1MA9 LINE L1 6174 6288 -24 1062 308 113 31 chr4 19023360 19024188 -183304159 - L2 LINE L2 0 3313 2397 2302 147 36 5 chr4 19024578 19024965 -183303382 - MSTA LTR MaLR -29 399 1 894 267 18 13 chr4 19025154 19025379 -183302968 + MIR SINE MIR 11 236 -26 539 276 83 24 chr4 19025443 19025697 -183302650 + L1ME LINE L1 5474 5742 -379 27 29 0 0 chr4 19025773 19025807 -183302540 + AT_rich Low_complexity Low_complexity 1 34 0 2617 194 65 76 chr4 19025807 19026608 -183301739 - L1ME2 LINE L1 -19 6145 5354 1388 235 68 7 chr4 19026618 19027043 -183301304 - L1ME2 LINE L1 -1070 5076 4626 634 278 27 44 chr4 19027055 19027350 -183300997 + L1MC4a LINE L1 5647 5936 -1872 208 191 0 21 chr4 19027350 19027397 -183300950 + (TA)n Simple_repeat Simple_repeat 1 46 0 698 271 143 40 chr4 19027403 19027754 -183300593 - MLT1K LTR MaLR -75 513 127 716 217 5 26 chr4 19028427 19028616 -183299731 + L1MA2 LINE L1 6117 6301 -3 21 0 0 0 chr4 19029326 19029347 -183299000 + AT_rich Low_complexity Low_complexity 1 21 0 1442 247 48 10 chr4 19029472 19029618 -183298729 - HsTC2 DNA Tc2 2 1900 1761 1607 167 33 25 chr4 19029618 19029893 -183298454 + AluJb SINE Alu 1 277 -35 1442 247 48 10 chr4 19029893 19030159 -183298188 - HsTC2 DNA Tc2 -137 1761 1296 658 304 86 52 chr4 19030150 19030571 -183297776 + MLT1J LTR MaLR 31 465 -46 * 32 43 0 0 chr4 19031662 19031708 -183296639 + AT_rich Low_complexity Low_complexity 1 46 0 554 168 22 36 chr4 19032884 19033021 -183295326 - L1MC1 LINE L1 0 6333 6199 321 235 20 41 chr4 19033292 19033390 -183294957 + L3 LINE CR1 1481 1576 -1 28 0 0 0 chr4 19033499 19033527 -183294820 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 19034641 19034669 -183293678 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 19035379 19035402 -183292945 + AT_rich Low_complexity Low_complexity 1 23 0 7745 19 0 3 chr4 19037158 19038735 -183289612 + L1PA2 LINE L1 4579 6152 -3 889 288 94 38 chr4 19039436 19039896 -183288451 + HAL1b LINE L1 41 541 -807 1692 192 79 84 chr4 19039896 19040452 -183287895 + MLT2B3 LTR ERVL 1 553 -1 889 288 94 38 chr4 19040452 19040564 -183287783 + HAL1b LINE L1 541 645 -703 2579 215 9 40 chr4 19040715 19040962 -183287385 + MER68 LTR ERV1 25 278 -284 2588 45 0 13 chr4 19040962 19041273 -183287074 + AluY SINE Alu 1 307 -4 2579 215 9 40 chr4 19041273 19041579 -183286768 + MER68 LTR ERV1 278 561 -1 2225 196 99 4 chr4 19042003 19042477 -183285870 + MLT2B1 LTR ERVL 2 520 0 249 226 121 40 chr4 19042942 19043066 -183285281 + L1 LINE L1 2896 3029 -3117 300 316 82 39 chr4 19043297 19043503 -183284844 + L1 LINE L1 3085 3299 -2847 1125 118 0 64 chr4 19043647 19043850 -183284497 - L1PA8 LINE L1 0 6172 5983 499 258 96 65 chr4 19043911 19044433 -183283914 + LTR50 LTR ERVL 18 506 -17 329 269 35 0 chr4 19044434 19044612 -183283735 + MIR SINE MIR 107 249 -13 241 317 70 39 chr4 19044651 19044935 -183283412 + L1 LINE L1 3512 3804 -2342 247 145 133 60 chr4 19045012 19045095 -183283252 + L2 LINE L2 2118 2206 -1108 578 253 27 50 chr4 19045095 19045274 -183283073 + MER58C DNA MER1_type 30 214 -1 568 215 8 0 chr4 19045325 19045455 -183282892 - L1ME3A LINE L1 -13 6157 6027 2097 105 10 3 chr4 19046081 19046375 -183281972 - AluSx SINE Alu -16 296 1 31 26 0 0 chr4 19046376 19046414 -183281933 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr4 19046456 19046480 -183281867 + AT_rich Low_complexity Low_complexity 1 24 0 466 297 162 38 chr4 19046677 19047017 -183281330 - L2 LINE L2 -5 3308 2927 842 113 7 0 chr4 19047309 19047451 -183280896 + (TTCC)n Simple_repeat Simple_repeat 1 143 0 254 311 0 71 chr4 19048797 19048980 -183279367 + L2 LINE L2 2804 2973 -341 542 299 116 37 chr4 19049137 19049219 -183279128 - MLT1J2 LTR MaLR -3 447 373 1646 201 58 48 chr4 19049219 19049681 -183278666 - MLT1C LTR MaLR 0 467 1 542 299 116 37 chr4 19049681 19049953 -183278394 - MLT1J2 LTR MaLR -77 373 65 1027 201 114 27 chr4 19049962 19050260 -183278087 - MER5C DNA MER1_type 0 324 1 439 306 9 46 chr4 19050291 19050510 -183277837 + L2 LINE L2 3089 3299 -14 484 251 64 59 chr4 19051241 19051292 -183277055 - MIR SINE MIR -4 258 209 1928 136 44 0 chr4 19051292 19051586 -183276761 - AluSx SINE Alu -4 308 2 484 251 64 59 chr4 19051586 19051721 -183276626 - MIR SINE MIR -53 209 71 189 226 0 0 chr4 19051874 19051927 -183276420 + (TTATG)n Simple_repeat Simple_repeat 3 55 0 342 273 55 27 chr4 19052687 19052797 -183275550 + L2 LINE L2 3160 3272 0 262 349 41 14 chr4 19052873 19053019 -183275328 + MIR SINE MIR 59 208 -54 342 45 0 0 chr4 19053019 19053063 -183275284 + (CA)n Simple_repeat Simple_repeat 1 44 0 5726 229 12 11 chr4 19053063 19054498 -183273849 + L1 LINE L1 2956 4393 -1753 282 29 0 0 chr4 19054498 19054533 -183273814 + (CA)n Simple_repeat Simple_repeat 2 36 0 1121 223 54 11 chr4 19054536 19054638 -183273709 + AluJo SINE Alu 19 115 -197 293 0 0 26 chr4 19054638 19054676 -183273671 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1121 223 54 11 chr4 19054676 19054833 -183273514 + AluJo SINE Alu 115 289 -23 30 27 0 0 chr4 19054833 19054870 -183273477 + AT_rich Low_complexity Low_complexity 1 37 0 565 191 0 0 chr4 19054952 19055041 -183273306 - MER7A DNA MER2_type -259 87 1 6473 169 34 15 chr4 19055128 19056574 -183271773 + L1M2 LINE L1 3956 5431 -743 1043 248 98 40 chr4 19057127 19057656 -183270691 + MLT1E3 LTR MaLR 10 616 -8 832 256 104 16 chr4 19058140 19058457 -183269890 + MLT1J LTR MaLR 17 361 -150 470 242 54 65 chr4 19058482 19058668 -183269679 + MLT1J LTR MaLR 1 184 -327 386 374 34 0 chr4 19058925 19059072 -183269275 + L2 LINE L2 3121 3272 0 2204 127 0 0 chr4 19059316 19059615 -183268732 - AluSx SINE Alu -13 299 1 2105 123 45 31 chr4 19059703 19060062 -183268285 + THE1B LTR MaLR 1 364 0 401 273 8 15 chr4 19060108 19060240 -183268107 + MLT1H LTR MaLR 30 160 -389 4004 120 176 93 chr4 19060385 19061806 -183266541 - pTR5 LTR ERV1 0 2438 743 2415 108 0 0 chr4 19062719 19063025 -183265322 - AluSx SINE Alu -6 306 1 413 299 61 70 chr4 19063188 19063646 -183264701 - MLT1J LTR MaLR -50 461 8 1207 170 62 0 chr4 19064273 19064514 -183263833 - L1PB4 LINE L1 -4 6152 5897 193 0 0 86 chr4 19064517 19064552 -183263795 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 419 190 0 25 chr4 19064553 19064632 -183263715 - FLAM_A SINE Alu -19 123 47 3602 151 32 1 chr4 19064646 19065607 -183262740 - L1PB4 LINE L1 -277 5879 4891 762 240 15 10 chr4 19065712 19065912 -183262435 - L1PB4 LINE L1 0 6156 5956 523 238 11 33 chr4 19066012 19066193 -183262154 - L1ME1 LINE L1 -193 5973 5797 2386 228 74 14 chr4 19066206 19067083 -183261264 - L1M4 LINE L1 -2769 3377 2448 594 230 46 5 chr4 19067082 19067278 -183261069 + L1ME1 LINE L1 5004 5207 -939 * 1170 237 62 25 chr4 19067283 19067637 -183260710 - MLT1A2 LTR MaLR 0 374 8 1639 218 56 126 chr4 19067654 19068364 -183259983 + L1ME1 LINE L1 5218 5844 -322 5110 97 12 0 chr4 19068364 19069047 -183259300 + LTR8 LTR ERV1 1 691 0 1639 218 56 126 chr4 19069047 19069345 -183259002 + L1ME1 LINE L1 5844 6161 -5 625 245 245 19 chr4 19069383 19069746 -183258601 - LTR50 LTR ERVL -349 446 2 242 385 59 30 chr4 19069747 19069882 -183258465 - L2 LINE L2 -31 3241 3103 184 402 0 24 chr4 19070306 19070388 -183257959 + MER5B DNA MER1_type 2 81 -97 504 302 57 60 chr4 19070409 19070707 -183257640 + L2 LINE L2 3016 3312 -1 21 0 0 0 chr4 19070931 19070952 -183257395 + AT_rich Low_complexity Low_complexity 1 21 0 415 293 127 28 chr4 19071136 19071348 -183256999 - MIR SINE MIR 0 262 30 222 353 12 0 chr4 19071472 19071557 -183256790 + L2 LINE L2 3228 3313 0 401 292 64 30 chr4 19071640 19071842 -183256505 - LTR33A LTR ERVL 0 523 315 307 310 86 20 chr4 19071893 19072090 -183256257 - LTR33A LTR ERVL -310 213 4 1387 140 108 7 chr4 19072277 19072626 -183255721 - Ricksha DNA DNA 0 3254 2812 * 2375 195 38 15 chr4 19072617 19072725 -183255622 - Ricksha DNA DNA -2636 610 506 2331 125 5 35 chr4 19072725 19073100 -183255247 + THE1B LTR MaLR 1 364 0 2375 195 38 15 chr4 19073100 19073520 -183254827 - Ricksha DNA DNA -2740 506 70 621 242 57 32 chr4 19073558 19073824 -183254523 + MLT1H LTR MaLR 221 547 -2 708 276 31 16 chr4 19073827 19074019 -183254328 + MIR SINE MIR 57 251 -11 33 25 0 0 chr4 19075021 19075061 -183253286 + AT_rich Low_complexity Low_complexity 1 40 0 608 299 134 0 chr4 19075080 19075304 -183253043 + MIR SINE MIR 3 256 -6 231 204 204 11 chr4 19075304 19075397 -183252950 - L1ME4a LINE L1 -33 6088 5978 387 245 121 58 chr4 19075656 19075979 -183252368 + L1MC/D LINE L1 5491 5832 -303 2362 117 19 19 chr4 19076059 19076434 -183251913 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr4 19076702 19076725 -183251622 + AT_rich Low_complexity Low_complexity 1 23 0 7779 21 0 0 chr4 19076936 19078181 -183250166 - L1PA2 LINE L1 0 6155 4911 8790 26 1 0 chr4 19078183 19079271 -183249076 + L1PA2 LINE L1 3822 4910 -1236 377 222 44 11 chr4 19079484 19079574 -183248773 + MER5A DNA MER1_type 2 94 -95 260 157 0 39 chr4 19080251 19080302 -183248045 - L2 LINE L2 0 3313 3265 1739 93 4 8 chr4 19080636 19080893 -183247454 + L1PA6 LINE L1 5894 6149 -5 1707 213 42 8 chr4 19081826 19082179 -183246168 - MLT1A1 LTR MaLR 0 365 1 300 341 239 16 chr4 19082512 19082767 -183245580 + L2 LINE L2 2961 3272 0 432 262 16 8 chr4 19083101 19083227 -183245120 - MIR SINE MIR -55 207 81 276 352 0 0 chr4 19083341 19083429 -183244918 - MIR SINE MIR 0 262 175 5405 143 19 4 chr4 19083454 19084413 -183243934 + L1MA4 LINE L1 5328 6300 0 22 0 0 0 chr4 19084707 19084729 -183243618 + AT_rich Low_complexity Low_complexity 1 22 0 366 166 1 0 chr4 19084746 19084823 -183243524 + MSTD LTR MaLR 328 396 0 615 314 0 0 chr4 19084823 19084976 -183243371 - MIR SINE MIR -109 153 1 533 296 0 0 chr4 19084981 19085106 -183243241 + MIR SINE MIR 20 144 -118 181 270 0 0 chr4 19085134 19085171 -183243176 + MIR SINE MIR 223 259 -3 301 289 138 28 chr4 19085556 19085809 -183242538 - MLT1J LTR MaLR -3 508 228 2327 108 3 0 chr4 19085862 19086168 -183242179 - AluSq SINE Alu -6 307 1 381 297 69 14 chr4 19086287 19086593 -183241754 + LTR33 LTR ERVL 19 367 -154 213 264 57 0 chr4 19086804 19086857 -183241490 - L2 LINE L2 -2 3311 3256 239 284 0 0 chr4 19087070 19087137 -183241210 - MLT1L LTR MaLR -340 275 209 467 295 81 43 chr4 19087287 19087497 -183240850 + MIR SINE MIR 7 224 -38 200 205 0 77 chr4 19088410 19088488 -183239859 - MIR SINE MIR -46 216 145 968 205 38 0 chr4 19088592 19088802 -183239545 - MER89 LTR ERV1 -7 552 335 463 202 13 58 chr4 19088941 19089152 -183239195 - MER89 LTR ERV1 -259 300 1 277 314 40 65 chr4 19089218 19089342 -183239005 - MIR3 SINE MIR -74 134 14 997 277 68 43 chr4 19089800 19090241 -183238106 - L2 LINE L2 -5 3308 2857 1131 128 6 0 chr4 19091248 19091420 -183236927 + MER2 DNA MER2_type 1 173 -172 369 182 15 0 chr4 19091467 19091533 -183236814 + MER2 DNA MER2_type 279 345 0 519 277 151 0 chr4 19091576 19091735 -183236612 - MER5A DNA MER1_type 0 189 7 188 280 100 0 chr4 19092678 19092728 -183235619 - L2 LINE L2 -9 3304 3250 817 55 18 9 chr4 19092736 19092845 -183235502 - AluY SINE Alu -7 304 195 1872 98 0 0 chr4 19093190 19093426 -183234921 - AluSx SINE Alu -24 288 53 302 309 32 11 chr4 19096674 19096768 -183231579 - MIR SINE MIR -132 130 35 198 316 53 0 chr4 19096862 19096938 -183231409 + MIR SINE MIR 178 257 -5 503 240 156 13 chr4 19096976 19097130 -183231217 + MER5A DNA MER1_type 14 189 0 292 246 14 0 chr4 19097235 19097304 -183231043 - L1MC4a LINE L1 -1067 6741 6672 * 339 241 74 0 chr4 19097301 19097409 -183230938 - L1MC4 LINE L1 -1468 6574 6459 260 393 8 0 chr4 19097508 19097630 -183230717 - L3 LINE CR1 -132 1445 1323 211 213 64 96 chr4 19097739 19097833 -183230514 + MIR SINE MIR 91 181 -81 735 252 64 6 chr4 19097941 19098198 -183230149 + Tigger5 DNA MER2_type 120 2323 0 226 286 16 0 chr4 19098293 19098356 -183229991 + CT-rich Low_complexity Low_complexity 1 64 0 228 279 221 10 chr4 19098356 19098460 -183229887 - L2 LINE L2 -1 3312 3187 21 0 0 0 chr4 19098468 19098489 -183229858 + AT_rich Low_complexity Low_complexity 1 21 0 387 274 41 48 chr4 19098523 19098669 -183229678 - L2 LINE L2 -50 3263 3119 754 243 21 5 chr4 19099735 19099924 -183228423 + LTR33 LTR ERVL 3 194 -327 305 290 63 63 chr4 19099976 19100183 -183228164 + LTR33 LTR ERVL 304 510 -11 247 288 170 26 chr4 19100276 19100429 -183227918 + MIR SINE MIR 52 226 -36 1383 212 12 12 chr4 19100765 19101110 -183227237 - MLT1A1 LTR MaLR -16 349 5 421 271 25 25 chr4 19101883 19102001 -183226346 - L2 LINE L2 -2 3311 3194 186 43 0 0 chr4 19102036 19102059 -183226288 + (CAAAG)n Simple_repeat Simple_repeat 2 24 0 1833 142 69 28 chr4 19103216 19103576 -183224771 - THE1C LTR MaLR 0 375 1 275 286 16 0 chr4 19103991 19104054 -183224293 + L2 LINE L2 3246 3309 -4 264 193 18 37 chr4 19105062 19105171 -183223176 + (TA)n Simple_repeat Simple_repeat 2 108 0 878 288 0 9 chr4 19107108 19107320 -183221027 + MIR SINE MIR 51 260 -2 192 319 115 92 chr4 19107503 19107763 -183220584 + L2 LINE L2 3007 3272 0 3560 209 15 24 chr4 19107907 19108908 -183219439 + L1MB2 LINE L1 4436 5431 -740 1230 160 5 19 chr4 19108908 19109106 -183219241 + AluJb SINE Alu 90 286 -26 360 0 0 0 chr4 19109106 19109146 -183219201 + (CA)n Simple_repeat Simple_repeat 2 41 0 1230 160 5 19 chr4 19109146 19109159 -183219188 + AluJb SINE Alu 286 298 -14 1462 180 33 0 chr4 19109163 19109463 -183218884 + L1MB2 LINE L1 5431 5740 -428 5038 132 13 13 chr4 19109494 19111202 -183217145 - L1PA15 LINE L1 -1 6815 5058 10770 229 25 11 chr4 19111309 19115039 -183213308 - L1PA15 LINE L1 -1722 5075 1280 1290 251 16 39 chr4 19115405 19115791 -183212556 - L1PA15 LINE L1 -6063 724 348 2104 143 47 19 chr4 19115793 19116218 -183212129 + L1MB2 LINE L1 5733 6169 -2 238 272 88 44 chr4 19116569 19116683 -183211664 - MIR SINE MIR -123 139 21 204 182 0 0 chr4 19117030 19117074 -183211273 + (TG)n Simple_repeat Simple_repeat 2 45 0 64 14 0 0 chr4 19117375 19117446 -183210901 + AT_rich Low_complexity Low_complexity 1 71 0 238 309 25 113 chr4 19117657 19117834 -183210513 + L2 LINE L2 2432 2576 -738 1296 180 90 51 chr4 19117834 19118190 -183210157 + MLT1A2 LTR MaLR 1 370 -4 238 309 25 113 chr4 19118190 19118294 -183210053 + L2 LINE L2 2576 2688 -626 1912 219 38 11 chr4 19118298 19118829 -183209518 + L1ME2 LINE L1 5618 6162 -2 978 171 40 11 chr4 19119072 19119248 -183209099 - AluJo SINE Alu -5 307 127 983 293 75 16 chr4 19119674 19120060 -183208287 - LTR16C LTR ERVL -9 482 74 22 0 0 0 chr4 19120322 19120344 -183208003 + AT_rich Low_complexity Low_complexity 1 22 0 211 227 0 23 chr4 19120532 19120576 -183207771 + MIR SINE MIR 107 149 -59 210 326 21 11 chr4 19120641 19120736 -183207611 - L2 LINE L2 -211 3061 2966 240 329 71 34 chr4 19120889 19121184 -183207163 + L2 LINE L2 2670 2975 -339 24 0 0 0 chr4 19121223 19121247 -183207100 + AT_rich Low_complexity Low_complexity 1 24 0 32606 98 16 25 chr4 19121252 19127441 -183200906 - L1PA6 LINE L1 -3 6151 11 210 370 9 76 chr4 19127451 19127662 -183200685 + L2 LINE L2 2990 3186 -86 1902 136 0 0 chr4 19127810 19128087 -183200260 - AluSx SINE Alu 0 302 26 24 0 0 0 chr4 19128761 19128785 -183199562 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 19128807 19128831 -183199516 + AT_rich Low_complexity Low_complexity 1 24 0 228 342 47 80 chr4 19129301 19129576 -183198771 - L2 LINE L2 -40 3232 2967 2455 124 13 5 chr4 19130679 19131051 -183197296 - THE1C LTR MaLR 0 375 1 4885 117 30 7 chr4 19131052 19131812 -183196535 - THE1C-int LTR MaLR -1 1579 802 364 265 6 77 chr4 19131812 19131982 -183196365 + L2 LINE L2 3154 3311 -2 180 0 0 0 chr4 19132007 19132027 -183196320 + (T)n Simple_repeat Simple_repeat 1 20 0 1104 159 0 0 chr4 19132049 19132219 -183196128 + THE1-int LTR MaLR 1087 1256 -324 1895 113 0 0 chr4 19132219 19132467 -183195880 - AluSq SINE Alu -65 248 1 217 225 0 0 chr4 19132474 19132514 -183195833 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 973 293 39 81 chr4 19132525 19133041 -183195306 + L2 LINE L2 2807 3300 -13 387 321 29 0 chr4 19133095 19133235 -183195112 + MIR SINE MIR 43 186 -76 769 291 84 4 chr4 19133255 19133492 -183194855 - MIR SINE MIR 0 262 7 230 209 0 0 chr4 19133486 19133529 -183194818 + MIR SINE MIR 219 261 -1 * 38 39 0 0 chr4 19133700 19133752 -183194595 + AT_rich Low_complexity Low_complexity 1 52 0 716 273 16 16 chr4 19134349 19134532 -183193815 - MIR3 SINE MIR -3 205 23 229 254 79 0 chr4 19134747 19134861 -183193486 - L1ME4a LINE L1 -3 6118 5996 23 33 0 0 chr4 19135046 19135076 -183193271 + AT_rich Low_complexity Low_complexity 1 30 0 340 320 162 28 chr4 19135077 19135465 -183192882 - L1M4 LINE L1 -2510 3636 3197 1228 293 54 19 chr4 19135468 19135891 -183192456 + LTR16A LTR ERVL 7 444 -6 3508 287 57 24 chr4 19135900 19137221 -183191126 + HERV16 LTR ERVL 20 1384 -3612 182 200 50 50 chr4 19137238 19137298 -183191049 - L2 LINE L2 -2828 486 427 305 219 27 14 chr4 19137311 19137384 -183190963 + HERV16 LTR ERVL 1477 1550 -3446 550 189 19 9 chr4 19137436 19137542 -183190805 + HERV16 LTR ERVL 1688 1794 -3202 267 235 24 0 chr4 19137566 19137651 -183190696 + L1ME3A LINE L1 3431 3517 -2629 962 155 109 0 chr4 19137707 19137881 -183190466 + MLT1D LTR MaLR 313 505 0 255 219 24 12 chr4 19137945 19138027 -183190320 + L1ME3A LINE L1 4472 4554 -1592 1168 232 92 41 chr4 19138056 19138492 -183189855 + MLT1C LTR MaLR 10 467 0 318 301 20 105 chr4 19138496 19138649 -183189698 + MIR SINE MIR 2 141 -121 241 287 39 78 chr4 19138822 19139052 -183189295 + L1ME3A LINE L1 4674 4894 -1252 1936 100 100 0 chr4 19139141 19139400 -183188947 + AluSg SINE Alu 6 290 -20 661 305 72 21 chr4 19139725 19140037 -183188310 + L1ME3A LINE L1 5280 5575 -595 2301 205 72 33 chr4 19140037 19140607 -183187740 + MLT1E LTR MaLR 2 593 0 661 305 72 21 chr4 19140607 19140944 -183187403 + L1ME3A LINE L1 5575 5962 -208 290 273 58 7 chr4 19141639 19141778 -183186569 + HAL1 LINE L1 1407 1552 -955 2192 191 34 32 chr4 19141949 19142446 -183185901 - MLT1D LTR MaLR -7 498 1 253 227 0 118 chr4 19142514 19142624 -183185723 + MIR SINE MIR 39 135 -73 207 317 0 0 chr4 19142633 19142693 -183185654 - L2 LINE L2 -4 3309 3250 227 246 0 35 chr4 19142735 19142792 -183185555 + MIR SINE MIR 196 250 -12 272 305 110 0 chr4 19142901 19142983 -183185364 - L2 LINE L2 -20 3252 3162 4173 123 5 2 chr4 19143157 19143769 -183184578 - L1PA16 LINE L1 -9 6157 5544 729 205 0 0 chr4 19144145 19144272 -183184075 - FLAM_A SINE Alu -6 127 1 21 0 0 0 chr4 19144701 19144722 -183183625 + AT_rich Low_complexity Low_complexity 1 21 0 598 279 79 6 chr4 19144730 19144895 -183183452 - MIR SINE MIR -55 207 31 283 388 7 7 chr4 19145388 19145540 -183182807 - L2 LINE L2 -594 2720 2569 264 227 0 30 chr4 19145687 19145753 -183182594 - L2 LINE L2 0 3313 3250 251 408 8 0 chr4 19146175 19146295 -183182052 + MIR SINE MIR 34 153 -75 21 0 0 0 chr4 19146369 19146390 -183181957 + AT_rich Low_complexity Low_complexity 1 21 0 509 270 223 9 chr4 19146518 19146733 -183181614 - MIR SINE MIR 0 262 2 313 318 153 11 chr4 19146810 19146999 -183181348 + MIR SINE MIR 3 218 -44 514 253 100 7 chr4 19147496 19147646 -183180701 + MIR SINE MIR 33 196 -66 604 129 0 10 chr4 19147971 19148072 -183180275 - LTR12 LTR ERV1 0 714 615 287 241 23 0 chr4 19148094 19148181 -183180166 - LTR30 LTR ERV1 -110 612 524 681 128 5 5 chr4 19148268 19148388 -183179959 - LTR12 LTR ERV1 -480 234 1 290 277 57 7 chr4 19148412 19148553 -183179794 + L1MC5 LINE L1 7272 7419 -542 * 378 290 38 1 chr4 19148551 19148704 -183179643 + L1MC4 LINE L1 7526 7775 -220 1996 148 33 33 chr4 19148725 19149089 -183179258 - THE1B LTR MaLR 0 364 1 250 282 0 14 chr4 19149208 19149279 -183179068 - MER5B DNA MER1_type -88 90 21 407 222 51 8 chr4 19149307 19149424 -183178923 + L1ME LINE L1 5670 5791 -379 835 228 96 28 chr4 19150626 19150876 -183177471 - MLT1H LTR MaLR 0 549 283 465 247 78 0 chr4 19151283 19151437 -183176910 + MER103 DNA DNA 1 166 0 200 339 30 55 chr4 19152028 19152193 -183176154 + MIR SINE MIR 88 248 -14 493 258 136 72 chr4 19152326 19152702 -183175645 + L2 LINE L2 2901 3300 -13 214 267 100 92 chr4 19153037 19153157 -183175190 + L2 LINE L2 2976 3096 -176 180 0 0 0 chr4 19153231 19153251 -183175096 + (T)n Simple_repeat Simple_repeat 1 20 0 1052 306 92 4 chr4 19153259 19153713 -183174634 + MLT1K LTR MaLR 95 588 0 693 351 39 9 chr4 19154921 19155251 -183173096 + L2 LINE L2 2636 2975 -339 962 194 35 31 chr4 19155277 19155504 -183172843 + MLT1D LTR MaLR 5 232 -273 478 315 165 30 chr4 19155544 19156197 -183172150 - L2 LINE L2 -163 3109 2366 13689 188 32 8 chr4 19156468 19158230 -183170117 - L1PB1 LINE L1 0 6867 5149 234 0 0 0 chr4 19158230 19158256 -183170091 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 13689 188 32 8 chr4 19158256 19162009 -183166338 - L1PB1 LINE L1 -1718 5149 1094 3112 233 70 15 chr4 19162013 19162987 -183165360 - L1PB1 LINE L1 -5817 1046 20 1953 160 7 0 chr4 19162992 19163298 -183165049 - AluSx SINE Alu -4 308 1 1116 120 0 25 chr4 19163300 19163500 -183164847 - L1MA8 LINE L1 -4 6287 6093 722 348 32 32 chr4 19163512 19163917 -183164430 + L3 LINE CR1 947 1351 -226 720 330 48 0 chr4 19165659 19166011 -183162336 - L1MC4a LINE L1 -1934 5857 5489 1929 172 44 6 chr4 19166026 19166387 -183161960 - THE1C LTR MaLR 0 375 1 9298 142 14 44 chr4 19166387 19167618 -183160729 - THE1C-int LTR MaLR 0 1580 408 1991 153 0 0 chr4 19167618 19167905 -183160442 + AluSx SINE Alu 18 304 -8 9298 142 14 44 chr4 19167905 19168300 -183160047 - THE1C-int LTR MaLR -1172 408 3 786 179 40 35 chr4 19168302 19168475 -183159872 - THE1C LTR MaLR 0 375 202 21786 30 1 0 chr4 19168475 19171887 -183156460 + L1PA3 LINE L1 2735 6153 -2 955 152 54 11 chr4 19171995 19172179 -183156168 - THE1C LTR MaLR -183 192 1 358 319 106 24 chr4 19172194 19172401 -183155946 - L1MC4a LINE L1 -2330 5461 5238 346 311 61 17 chr4 19172817 19172997 -183155350 - L1MC4a LINE L1 -1553 4576 4389 680 292 39 34 chr4 19173163 19173629 -183154718 - HAL1 LINE L1 -873 1634 1167 342 253 25 19 chr4 19173985 19174147 -183154200 + L1M4 LINE L1 2251 2413 -3733 238 248 44 80 chr4 19174169 19174282 -183154065 - L1MC4a LINE L1 -5692 427 319 327 283 133 17 chr4 19174658 19174778 -183153569 + MIR SINE MIR 35 168 -94 562 267 149 0 chr4 19174907 19175102 -183153245 + MER58A DNA MER1_type 1 224 0 1559 195 59 49 chr4 19175358 19175748 -183152599 - MSTD LTR MaLR -2 394 1 336 343 47 83 chr4 19176032 19176478 -183151869 + L2 LINE L2 2838 3267 -5 331 292 97 26 chr4 19177444 19177557 -183150790 - MIR SINE MIR -117 145 25 1414 91 10 5 chr4 19177557 19177755 -183150592 - AluY SINE Alu -8 303 105 513 0 0 0 chr4 19177822 19177879 -183150468 + (CA)n Simple_repeat Simple_repeat 2 58 0 1319 230 113 57 chr4 19177967 19178480 -183149867 - MLT1F LTR MaLR 0 542 1 433 194 163 0 chr4 19178870 19178968 -183149379 + MIR3 SINE MIR 42 155 -53 1458 106 0 0 chr4 19179099 19179288 -183149059 + AluSg/x SINE Alu 114 302 -8 315 304 0 0 chr4 19179293 19179372 -183148975 - Charlie8 DNA MER1_type -2217 200 122 3255 115 4 10 chr4 19180375 19180878 -183147469 - LTR3b LTR ERVK 0 500 1 757 252 59 27 chr4 19180931 19181153 -183147194 + MIR SINE MIR 32 260 -2 236 275 14 29 chr4 19181799 19181868 -183146479 + L2 LINE L2 3244 3311 -2 640 287 36 15 chr4 19182892 19183087 -183145260 + MIR SINE MIR 2 200 -62 413 353 58 21 chr4 19183879 19184205 -183144142 - L2 LINE L2 -21 3292 2955 588 266 198 16 chr4 19185016 19185264 -183143083 - MLT1J2 LTR MaLR -120 330 38 255 299 78 66 chr4 19185368 19185702 -183142645 + MLT1K LTR MaLR 209 546 -42 369 0 0 0 chr4 19186360 19186401 -183141946 + (TTA)n Simple_repeat Simple_repeat 2 42 0 712 145 17 0 chr4 19186401 19186518 -183141829 - AluJb SINE Alu -192 120 2 737 275 111 30 chr4 19186532 19186738 -183141609 - MLT1J LTR MaLR -54 457 212 590 259 232 24 chr4 19186738 19187074 -183141273 - MLT1I LTR MaLR -3 406 1 737 275 111 30 chr4 19187074 19187201 -183141146 - MLT1J LTR MaLR -299 212 97 3192 238 55 58 chr4 19187217 19188411 -183139936 - L1MCb LINE L1 -4854 1191 1 304 248 34 34 chr4 19188460 19188577 -183139770 - MLT1J LTR MaLR -394 117 1 212 0 36 0 chr4 19189055 19189083 -183139264 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 574 275 101 52 chr4 19189110 19189455 -183138892 + MLT1J LTR MaLR 117 478 -33 1137 306 33 13 chr4 19189709 19190164 -183138183 - LTR16B LTR ERVL 0 464 1 28 29 0 0 chr4 19190632 19190667 -183137680 + AT_rich Low_complexity Low_complexity 1 35 0 39 50 0 0 chr4 19190700 19190760 -183137587 + AT_rich Low_complexity Low_complexity 1 60 0 1772 193 88 18 chr4 19191333 19191372 -183136975 - MSTA LTR MaLR 0 428 393 2085 128 0 0 chr4 19191372 19191697 -183136650 + AluSx SINE Alu 1 325 0 1772 193 88 18 chr4 19191697 19192056 -183136291 - MSTA LTR MaLR -35 393 1 295 275 132 0 chr4 19192181 19192272 -183136075 - MIR SINE MIR -5 257 155 2333 105 3 13 chr4 19192536 19192849 -183135498 + AluSg SINE Alu 1 310 0 434 279 103 7 chr4 19192860 19192996 -183135351 - MIR SINE MIR -102 160 12 328 323 82 0 chr4 19193006 19193164 -183135183 + MIR SINE MIR 77 247 -15 409 199 87 63 chr4 19193680 19193836 -183134511 + MIR SINE MIR 30 190 -62 237 279 64 109 chr4 19193972 19194232 -183134115 - L2 LINE L2 -167 3105 2857 336 24 0 0 chr4 19194232 19194273 -183134074 + (TG)n Simple_repeat Simple_repeat 2 42 0 237 279 64 109 chr4 19194273 19194295 -183134052 - L2 LINE L2 -415 2857 2836 1344 161 31 85 chr4 19194346 19194663 -183133684 - AluSx SINE Alu 0 312 13 295 327 110 36 chr4 19194720 19195056 -183133291 - L2 LINE L2 -683 2631 2271 193 333 109 14 chr4 19195303 19195441 -183132906 + MIR3 SINE MIR 16 166 -42 2506 63 0 0 chr4 19195444 19195744 -183132603 - AluY SINE Alu -11 300 1 615 274 25 19 chr4 19196446 19196603 -183131744 + MIR3 SINE MIR 30 187 -21 248 295 177 34 chr4 19196690 19196824 -183131523 - MIR SINE MIR -62 146 5 188 316 158 14 chr4 19197499 19197638 -183130709 - MIR SINE MIR -5 257 99 424 284 206 15 chr4 19198150 19198354 -183129993 + MIR SINE MIR 20 262 0 456 216 64 39 chr4 19199436 19199591 -183128756 - L1ME2 LINE L1 -11 6323 5998 22 35 0 0 chr4 19199913 19199942 -183128405 + AT_rich Low_complexity Low_complexity 1 29 0 577 310 73 52 chr4 19199956 19200565 -183127782 + L1M4c LINE L1 1007 3497 -2885 259 369 15 0 chr4 19200574 19200704 -183127643 + LTR16A LTR ERVL 18 149 -301 422 277 78 6 chr4 19200827 19200993 -183127354 + LTR16A LTR ERVL 261 438 -12 579 241 62 20 chr4 19201117 19201312 -183127035 - L1ME1 LINE L1 -5 6161 5959 351 284 31 86 chr4 19201336 19201498 -183126849 + MIR3 SINE MIR 11 163 -45 252 345 14 0 chr4 19201606 19201751 -183126596 - L1MEc LINE L1 -6188 208 62 1493 151 84 57 chr4 19201934 19202233 -183126114 + AluJo SINE Alu 6 312 0 359 328 21 42 chr4 19202290 19202482 -183125865 + L1M4c LINE L1 4516 4703 -1679 833 262 31 0 chr4 19202508 19202699 -183125648 - MIR SINE MIR -19 243 47 214 349 93 0 chr4 19203251 19203337 -183125010 - L3 LINE CR1 -932 645 552 503 249 120 60 chr4 19203488 19203705 -183124642 + MIR SINE MIR 33 262 0 700 168 14 7 chr4 19203864 19204007 -183124340 - L1MB4 LINE L1 -1 6179 6036 1080 261 45 45 chr4 19205597 19206199 -183122148 - L1MEd LINE L1 -4919 1200 599 436 325 102 41 chr4 19206411 19206725 -183121622 - L1MEd LINE L1 -5771 348 16 1073 152 0 0 chr4 19207571 19207736 -183120611 + THE1C LTR MaLR 1 165 -210 1549 70 0 14 chr4 19207830 19208043 -183120304 + THE1C LTR MaLR 166 375 0 312 247 11 0 chr4 19208254 19208347 -183120000 + MLT2D LTR ERVL 1 94 -320 34 24 0 0 chr4 19208349 19208390 -183119957 + AT_rich Low_complexity Low_complexity 1 41 0 1426 190 10 33 chr4 19208392 19208697 -183119650 + MLT2D LTR ERVL 109 406 -8 358 299 112 74 chr4 19208744 19209109 -183119238 + L2 LINE L2 2002 2380 -934 478 226 161 8 chr4 19209135 19209259 -183119088 + MIR SINE MIR 90 232 -30 382 235 214 0 chr4 19209318 19209416 -183118931 + L2 LINE L2 3191 3309 -4 461 312 78 34 chr4 19209431 19209636 -183118711 + L2 LINE L2 2435 2648 -666 193 323 111 0 chr4 19211599 19211698 -183116649 + MIR SINE MIR 37 146 -62 1401 164 95 29 chr4 19211716 19212063 -183116284 + L1MA7 LINE L1 5919 6288 -3 2070 121 13 16 chr4 19212900 19213213 -183115134 + AluSx SINE Alu 1 312 0 2137 127 3 3 chr4 19213295 19213625 -183114722 - THE1B LTR MaLR -33 331 2 5895 109 21 1 chr4 19213625 19214484 -183113863 - THE1B-int LTR MaLR 0 1580 705 2417 110 5 32 chr4 19214505 19214878 -183113469 - THE1B LTR MaLR -1 363 1 22 56 0 0 chr4 19214919 19214955 -183113392 + AT_rich Low_complexity Low_complexity 1 36 0 360 287 42 28 chr4 19215201 19215344 -183113003 + MER5A DNA MER1_type 21 165 -24 180 0 0 0 chr4 19215443 19215463 -183112884 + (CA)n Simple_repeat Simple_repeat 1 20 0 1774 156 20 7 chr4 19215687 19215989 -183112358 - AluJb SINE Alu -2 310 5 180 234 16 47 chr4 19216543 19216607 -183111740 + L2 LINE L2 3179 3240 -73 224 339 106 42 chr4 19216707 19217394 -183110953 + L2 LINE L2 976 1706 -1608 770 128 35 6 chr4 19217655 19217827 -183110520 + Charlie5 DNA MER1_type 2387 2563 -49 1155 196 113 38 chr4 19218678 19219122 -183109225 - Charlie1 DNA MER1_type 0 2761 2285 283 239 68 11 chr4 19219118 19219206 -183109141 - Charlie1 DNA MER1_type -2611 150 58 * 255 289 0 12 chr4 19219729 19219812 -183108535 + CT-rich Low_complexity Low_complexity 2 83 0 1827 146 10 10 chr4 19220157 19220451 -183107896 - AluJo SINE Alu -13 299 6 235 328 120 88 chr4 19220464 19220805 -183107542 + L2 LINE L2 2920 3271 -1 1027 218 74 11 chr4 19221647 19221931 -183106416 + MER58B DNA MER1_type 40 341 0 297 277 128 0 chr4 19222496 19222590 -183105757 + L2 LINE L2 3150 3255 -17 996 194 72 14 chr4 19222729 19222951 -183105396 + MER46A DNA MER2_type 1 235 -1 1044 211 0 0 chr4 19224562 19224770 -183103577 + MER3 DNA MER1_type 2 209 0 364 274 203 39 chr4 19224790 19224943 -183103404 + MER5A DNA MER1_type 12 189 0 1081 255 95 33 chr4 19224992 19225360 -183102987 - MLT1I LTR MaLR -18 391 1 312 280 173 13 chr4 19225411 19225561 -183102786 + L2 LINE L2 2591 2764 -550 396 281 42 30 chr4 19225609 19225776 -183102571 + MIR SINE MIR 68 236 -26 286 272 123 26 chr4 19225868 19225982 -183102365 + L2 LINE L2 3133 3257 -15 248 379 45 11 chr4 19226056 19226233 -183102114 + L2 LINE L2 2875 3057 -215 222 183 154 101 chr4 19226430 19226599 -183101748 - L2 LINE L2 -449 2865 2688 237 241 35 0 chr4 19226890 19226948 -183101399 - MLT1J LTR MaLR -49 462 403 340 294 88 7 chr4 19227157 19227293 -183101054 - MLT1J LTR MaLR -309 202 56 275 299 0 0 chr4 19227938 19228005 -183100342 - Charlie8 DNA MER1_type 0 2417 2351 2155 125 6 10 chr4 19228831 19229142 -183099205 + AluSg SINE Alu 1 310 0 228 369 48 0 chr4 19230651 19230754 -183097593 - L3 LINE CR1 -3 1574 1467 371 356 85 54 chr4 19231163 19232048 -183096299 - L2 LINE L2 -463 2851 1940 335 233 118 80 chr4 19232933 19233220 -183095127 + L1ME3A LINE L1 5873 6170 0 761 183 0 0 chr4 19233229 19233355 -183094992 + FLAM_C SINE Alu 1 126 -17 240 82 49 16 chr4 19233654 19233715 -183094632 + (TTATA)n Simple_repeat Simple_repeat 5 67 0 950 194 48 16 chr4 19233719 19233971 -183094376 + L1MB7 LINE L1 5906 6165 -19 1013 67 0 0 chr4 19234298 19234433 -183093914 - L1MA4A LINE L1 -532 5771 5637 * 1188 138 30 13 chr4 19234417 19234648 -183093699 + L1MA4A LINE L1 5764 5998 -305 2002 182 75 15 chr4 19234664 19235065 -183093282 - MSTB LTR MaLR 0 426 2 4346 185 27 1 chr4 19235071 19235918 -183092429 - MSTB-int LTR MaLR -5 1646 778 1856 141 73 102 chr4 19235922 19236363 -183091984 + MSTA LTR MaLR 1 428 0 3474 181 66 1 chr4 19236363 19237059 -183091288 + MSTA-int LTR MaLR 1 741 -910 334 186 0 0 chr4 19237059 19237118 -183091229 - MSTB LTR MaLR -367 59 1 1498 142 47 0 chr4 19237121 19237396 -183090951 + L1MA4A LINE L1 6012 6299 -4 435 292 119 37 chr4 19237574 19237942 -183090405 + L1MDa LINE L1 1715 2083 -839 22 0 0 0 chr4 19238065 19238087 -183090260 + AT_rich Low_complexity Low_complexity 1 22 0 450 269 91 53 chr4 19238372 19239174 -183089173 + L1MDa LINE L1 2493 3323 -3217 24114 136 22 11 chr4 19239231 19245543 -183082804 - L1PA8A LINE L1 -3 6443 1 1762 200 0 0 chr4 19245546 19245851 -183082496 - AluJb SINE Alu -7 305 1 656 280 86 79 chr4 19245904 19247370 -183080977 + L1MDa LINE L1 3468 4923 -1635 817 240 162 3 chr4 19247370 19247666 -183080681 + MER2 DNA MER2_type 1 343 -1 656 280 86 79 chr4 19247666 19247865 -183080482 + L1MDa LINE L1 4923 5119 -1439 2640 42 7 0 chr4 19247865 19248174 -183080173 - AluY SINE Alu 0 311 1 656 280 86 79 chr4 19248174 19248461 -183079886 + L1MDa LINE L1 5119 5403 -1155 3795 74 6 8 chr4 19248461 19248972 -183079375 + L1PA10 LINE L1 5657 6166 -2 656 280 86 79 chr4 19248972 19249041 -183079306 + L1MDa LINE L1 5403 5470 -1088 2103 121 0 10 chr4 19249041 19249381 -183078966 + AluSq SINE Alu 1 313 0 656 280 86 79 chr4 19249381 19249856 -183078491 + L1MDa LINE L1 5470 5981 -577 396 269 81 49 chr4 19249892 19250115 -183078232 - LTR16A1 LTR ERVL -12 445 216 8879 165 36 44 chr4 19250399 19252746 -183075601 - L1M2 LINE L1 -729 5471 3163 695 54 0 0 chr4 19252751 19252843 -183075504 - L1MA1 LINE L1 0 6302 6211 9609 184 19 5 chr4 19252845 19254919 -183073428 - L1 LINE L1 -790 6775 4672 10690 186 71 10 chr4 19254927 19257102 -183071245 - L1 LINE L1 -5241 2324 16 2662 221 30 9 chr4 19257114 19257893 -183070454 - L1M2 LINE L1 -2861 3173 2379 934 219 33 111 chr4 19257893 19258254 -183070093 + MER2 DNA MER2_type 2 334 -11 1094 248 69 29 chr4 19258256 19259067 -183069280 - L1M2 LINE L1 -3643 2391 1537 * 2604 262 62 13 chr4 19259061 19260330 -183068017 - L1M2 LINE L1 -4385 1650 331 1632 298 20 7 chr4 19260341 19260781 -183067566 - L1M2 LINE L1 -5506 449 4 279 302 11 37 chr4 19261173 19261281 -183067066 - MIR SINE MIR -73 135 54 2886 193 22 0 chr4 19262556 19263135 -183065212 - L1MC3 LINE L1 0 7785 7194 231 352 23 0 chr4 19263142 19263230 -183065117 - MLT1F1 LTR MaLR -443 124 35 378 169 39 85 chr4 19263230 19263329 -183065018 - L1MC3 LINE L1 -688 7166 7064 198 0 0 0 chr4 19263329 19263351 -183064996 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2138 116 0 0 chr4 19263351 19263636 -183064711 - AluSg SINE Alu -25 285 1 378 169 39 85 chr4 19263636 19263665 -183064682 - L1MC3 LINE L1 -788 7066 7043 1157 217 59 28 chr4 19263665 19264016 -183064331 - MSTD LTR MaLR 0 396 1 7018 203 67 26 chr4 19264025 19265294 -183063053 - L1MC3 LINE L1 -750 5465 5646 2209 110 67 14 chr4 19265294 19265640 -183062707 + THE1B LTR MaLR 1 364 0 7018 203 67 26 chr4 19265640 19266480 -183061867 - L1MC3 LINE L1 -568 5647 4843 1416 251 7 2 chr4 19266486 19266904 -183061443 - L1MC3 LINE L1 -1329 4886 4467 * 2893 257 29 23 chr4 19266899 19268104 -183060243 - L1MC3 LINE L1 -3010 3205 2040 1294 150 5 0 chr4 19268120 19268320 -183060027 + L1PA16 LINE L1 2 202 -6647 11776 165 31 42 chr4 19268320 19270783 -183057564 + L1PA16 LINE L1 734 3157 -3692 468 51 0 0 chr4 19270783 19270842 -183057505 + (CA)n Simple_repeat Simple_repeat 2 60 0 305 130 0 0 chr4 19270843 19270889 -183057458 + L1 LINE L1 4302 4347 -2502 227 232 0 53 chr4 19270959 19271054 -183057293 - L1MC4 LINE L1 -1339 6703 6614 638 211 0 13 chr4 19271057 19271213 -183057134 + (TATATG)n Simple_repeat Simple_repeat 3 156 0 304 267 0 0 chr4 19271217 19271307 -183057040 + L1MC4 LINE L1 6614 6703 -1339 396 200 0 0 chr4 19271307 19271392 -183056955 + (TA)n Simple_repeat Simple_repeat 2 86 0 242 278 0 0 chr4 19271393 19271483 -183056864 + L1MC4 LINE L1 6614 6703 -1339 369 232 0 0 chr4 19271483 19271578 -183056769 + (TA)n Simple_repeat Simple_repeat 2 96 0 312 228 0 22 chr4 19271583 19271675 -183056672 - L1MC4 LINE L1 -1339 6703 6614 360 210 0 0 chr4 19271676 19271757 -183056590 + (TA)n Simple_repeat Simple_repeat 2 82 0 257 228 22 43 chr4 19271757 19271849 -183056498 + L1MC4 LINE L1 6614 6703 -1339 8808 192 20 99 chr4 19271880 19272917 -183055430 + L1PA16 LINE L1 3151 4269 -2600 180 0 0 0 chr4 19272917 19272937 -183055410 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8808 192 20 99 chr4 19272937 19275798 -183052549 + L1PA16 LINE L1 4269 6715 -154 1235 217 54 13 chr4 19275808 19276184 -183052163 - L1MDb LINE L1 -4992 1437 1046 186 289 246 0 chr4 19276223 19276337 -183052010 - MIR3 SINE MIR -31 177 36 1589 197 42 36 chr4 19276497 19276835 -183051512 + MLT1B LTR MaLR 28 370 -20 1862 175 55 40 chr4 19276835 19277257 -183051090 + MSTC LTR MaLR 1 428 0 1589 197 42 36 chr4 19277257 19277279 -183051068 + MLT1B LTR MaLR 370 390 0 917 219 10 26 chr4 19278123 19278315 -183050032 - MER5A DNA MER1_type 0 189 1 228 326 22 11 chr4 19278352 19278441 -183049906 + CT-rich Low_complexity Low_complexity 5 94 0 192 40 0 0 chr4 19278442 19278467 -183049880 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4747 48 7 2 chr4 19278475 19279062 -183049285 - L1PA7 LINE L1 -17 6137 5548 489 318 39 13 chr4 19279979 19280133 -183048214 + MIR3 SINE MIR 42 199 -9 420 270 17 9 chr4 19280653 19280768 -183047579 - MIR SINE MIR -1 261 146 368 249 76 104 chr4 19280779 19281068 -183047279 - L2 LINE L2 -12 3301 3021 278 323 140 27 chr4 19281849 19282035 -183046312 + LTR67 LTR ERVL 98 304 -253 787 193 0 0 chr4 19282248 19282393 -183045954 + AluJb SINE Alu 162 306 -6 209 328 0 0 chr4 19283104 19283171 -183045176 + CT-rich Low_complexity Low_complexity 2 68 0 21 36 0 0 chr4 19283473 19283501 -183044846 + AT_rich Low_complexity Low_complexity 1 28 0 268 294 110 48 chr4 19284133 19284279 -183044068 + MIR3 SINE MIR 3 157 -51 25 31 0 0 chr4 19284465 19284497 -183043850 + AT_rich Low_complexity Low_complexity 1 32 0 1129 263 57 15 chr4 19284675 19285226 -183043121 + L1ME3A LINE L1 5559 6160 -2 1214 299 71 43 chr4 19285544 19286202 -183042145 + L1MEc LINE L1 39 715 -5681 1118 219 29 13 chr4 19286212 19286656 -183041691 + MLT1D LTR MaLR 1 505 0 2784 241 88 26 chr4 19286660 19287755 -183040592 + L1MEc LINE L1 724 1885 -4511 233 210 0 74 chr4 19288350 19288431 -183039916 + L1ME1 LINE L1 5927 6001 -165 664 196 12 37 chr4 19288451 19288614 -183039733 + L1MA10 LINE L1 6169 6327 -7 1482 173 0 64 chr4 19289065 19289390 -183038957 - AluJb SINE Alu 0 311 6 292 297 80 85 chr4 19289574 19289786 -183038561 + MIR SINE MIR 28 238 -24 267 241 159 0 chr4 19290615 19290725 -183037622 + MIR SINE MIR 4 132 -105 535 209 27 91 chr4 19290726 19290913 -183037434 - MLT1D LTR MaLR -310 195 21 352 305 205 35 chr4 19292280 19292539 -183035808 + L2 LINE L2 2472 2774 -540 788 266 54 48 chr4 19292576 19292911 -183035436 - MLT1I LTR MaLR -72 337 1 250 139 0 0 chr4 19293009 19293052 -183035295 + L2 LINE L2 2933 2975 -339 1338 206 4 0 chr4 19293071 19293328 -183035019 + L1MB7 LINE L1 5884 6141 -43 1978 107 76 3 chr4 19293691 19293982 -183034365 - AluSq SINE Alu -1 312 1 368 366 101 21 chr4 19294070 19294535 -183033812 + L2 LINE L2 2807 3308 -5 447 289 81 55 chr4 19294553 19294788 -183033559 + MIR SINE MIR 18 258 -4 370 290 71 19 chr4 19295453 19295633 -183032714 + MIR SINE MIR 18 198 -57 306 252 148 58 chr4 19295747 19295874 -183032473 - MIR SINE MIR -70 192 47 2574 94 14 3 chr4 19295874 19296234 -183032113 + THE1B LTR MaLR 1 364 0 306 252 148 58 chr4 19296234 19296261 -183032086 - MIR SINE MIR -215 47 24 249 237 134 31 chr4 19297163 19297260 -183031087 + MIR SINE MIR 48 154 -108 * 716 226 161 5 chr4 19297253 19297439 -183030908 - MIR SINE MIR 0 262 48 207 351 135 0 chr4 19298111 19298296 -183030051 + MIR SINE MIR 37 246 -16 372 301 98 54 chr4 19298305 19298508 -183029839 + LTR67 LTR ERVL 5 216 -341 1255 111 0 0 chr4 19298957 19299128 -183029219 - AluSc SINE Alu -11 298 128 326 291 108 25 chr4 19299271 19299429 -183028918 - MIR SINE MIR -89 173 3 40540 55 2 7 chr4 19299935 19305895 -183022452 + L1PA4 LINE L1 221 6154 -1 192 217 0 0 chr4 19306075 19306121 -183022226 + CT-rich Low_complexity Low_complexity 3 48 0 237 152 0 0 chr4 19306699 19306745 -183021602 - LTR66 LTR ERVL -171 439 394 * 238 152 0 0 chr4 19306705 19306751 -183021596 + LTR66 LTR ERVL 394 439 -171 768 196 14 7 chr4 19306972 19307115 -183021232 + AluSc SINE Alu 137 280 -29 409 291 89 30 chr4 19307468 19307705 -183020642 - L1ME LINE L1 -341 5780 5530 1714 175 3 29 chr4 19308142 19308451 -183019896 + AluJb SINE Alu 3 303 -9 377 284 146 44 chr4 19308685 19309138 -183019209 - L1ME LINE L1 -367 5754 5255 250 255 94 38 chr4 19309173 19309279 -183019068 - L2 LINE L2 -589 2725 2614 25 65 0 0 chr4 19309390 19309436 -183018911 + AT_rich Low_complexity Low_complexity 1 46 0 301 281 219 6 chr4 19310003 19310163 -183018184 + MIR SINE MIR 43 236 -26 754 282 23 14 chr4 19310195 19310411 -183017936 - MIR SINE MIR -32 230 13 530 263 15 0 chr4 19310475 19310608 -183017739 - MIR3 SINE MIR -38 170 36 2360 91 0 25 chr4 19310858 19311176 -183017171 - AluSg SINE Alu 0 310 1 185 333 15 0 chr4 19311794 19311860 -183016487 - L3 LINE CR1 -83 1494 1428 243 318 136 0 chr4 19311894 19312026 -183016321 - MIR SINE MIR -13 249 100 686 256 143 42 chr4 19312338 19312406 -183015941 + MIR SINE MIR 1 61 -201 2561 189 35 21 chr4 19312406 19312873 -183015474 + MLT2B1 LTR ERVL 1 460 -60 252 0 0 0 chr4 19312873 19312901 -183015446 + (TC)n Simple_repeat Simple_repeat 2 29 0 225 0 0 0 chr4 19312900 19312925 -183015422 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 2561 189 35 21 chr4 19312901 19312929 -183015418 + MLT2B1 LTR ERVL 460 486 -34 180 0 0 0 chr4 19312929 19312949 -183015398 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 207 114 0 0 chr4 19312948 19312983 -183015364 + (TA)n Simple_repeat Simple_repeat 2 36 0 2561 189 35 21 chr4 19312949 19313023 -183015324 + MLT2B1 LTR ERVL 486 520 0 686 256 143 42 chr4 19313023 19313192 -183015155 + MIR SINE MIR 61 262 0 567 337 28 31 chr4 19313880 19314135 -183014212 + MIR SINE MIR 7 260 -2 572 90 0 11 chr4 19314299 19314388 -183013959 + (TCCC)n Simple_repeat Simple_repeat 3 90 0 615 238 5 16 chr4 19315218 19315407 -183012940 - MER53 DNA DNA -2 187 1 183 135 27 27 chr4 19315504 19315541 -183012806 + L2 LINE L2 3228 3264 -8 3327 161 38 10 chr4 19316229 19316911 -183011436 - L1MA8 LINE L1 -22 6269 5569 268 282 0 105 chr4 19317254 19317378 -183010969 + L2 LINE L2 3201 3311 -2 199 286 16 16 chr4 19317935 19317998 -183010349 + L2 LINE L2 3209 3271 -1 1980 137 135 5 chr4 19318401 19318780 -183009567 + MSTA LTR MaLR 1 428 0 736 309 17 4 chr4 19319134 19319367 -183008980 + MIR SINE MIR 13 248 -14 210 229 169 0 chr4 19319621 19319704 -183008643 + L2 LINE L2 3217 3313 0 495 274 185 2 chr4 19320854 19321054 -183007293 - MIR SINE MIR -14 248 11 23 0 0 0 chr4 19321435 19321458 -183006889 + AT_rich Low_complexity Low_complexity 1 23 0 196 337 20 20 chr4 19322083 19322184 -183006163 + L3 LINE CR1 1187 1287 -290 372 314 176 0 chr4 19322280 19322433 -183005914 + L3 LINE CR1 1295 1474 -103 4505 185 49 11 chr4 19324225 19324691 -183003656 - L1MA9 LINE L1 -17 6295 5848 198 0 0 0 chr4 19324691 19324713 -183003634 + (TG)n Simple_repeat Simple_repeat 2 23 0 4505 185 49 11 chr4 19324713 19326246 -183002101 - L1MA9 LINE L1 -464 5848 4216 12606 32 1 0 chr4 19326247 19327823 -183000524 - L1PA3 LINE L1 -1269 4877 3300 7534 33 5 0 chr4 19327826 19329099 -182999248 + L1PA3 LINE L1 4879 6155 0 4318 183 64 43 chr4 19329103 19330335 -182998012 - L1MA9 LINE L1 -1926 4220 2963 242 253 98 16 chr4 19330327 19330521 -182997826 - L1M4c LINE L1 -4140 2072 1863 * 345 316 24 42 chr4 19330587 19330755 -182997592 - L1M4c LINE L1 -4161 2050 1532 447 137 0 0 chr4 19330755 19330828 -182997519 - AluS SINE Alu -239 73 1 2939 242 101 19 chr4 19330828 19331442 -182996905 - L1M4c LINE L1 -4567 1574 853 2551 138 33 2 chr4 19331442 19331861 -182996486 + MER57B LTR ERV1 3 434 0 2939 242 101 19 chr4 19331861 19332195 -182996152 - L1M4c LINE L1 -5288 853 548 1549 261 61 0 chr4 19332210 19332605 -182995742 - L1M4c LINE L1 -5680 461 43 225 0 0 0 chr4 19332778 19332803 -182995544 + (T)n Simple_repeat Simple_repeat 1 25 0 248 300 50 33 chr4 19335152 19335272 -182993075 - L2 LINE L2 -217 3055 2934 270 373 113 10 chr4 19335646 19335850 -182992497 + L2 LINE L2 2184 2408 -906 353 296 7 0 chr4 19336121 19336256 -182992091 + MER103 DNA DNA 21 156 -10 21 0 0 0 chr4 19337055 19337076 -182991271 + AT_rich Low_complexity Low_complexity 1 21 0 27383 120 30 66 chr4 19337175 19343573 -182984774 + L1PA8 LINE L1 12 6169 -3 450 235 72 48 chr4 19345133 19345394 -182982953 - MER52A LTR ERV1 -44 750 579 748 268 0 6 chr4 19345452 19345631 -182982716 - LTR28 LTR ERV1 -842 178 1 356 287 91 7 chr4 19345664 19345807 -182982540 + MIR SINE MIR 12 166 -96 * 371 273 83 16 chr4 19345801 19345922 -182982425 + L2 LINE L2 3144 3272 0 201 296 0 42 chr4 19346079 19346150 -182982197 + L2 LINE L2 3020 3087 -185 265 331 147 12 chr4 19347068 19347319 -182981028 + MLT1J2 LTR MaLR 45 329 -121 878 276 77 84 chr4 19348170 19348767 -182979580 + MLT1E LTR MaLR 1 593 0 402 313 28 34 chr4 19349937 19350116 -182978231 + MIR SINE MIR 3 180 -82 485 234 13 84 chr4 19350153 19350307 -182978040 + MIR SINE MIR 13 155 -107 180 0 0 0 chr4 19350307 19350327 -182978020 + (TAA)n Simple_repeat Simple_repeat 2 21 0 218 330 116 42 chr4 19350349 19350564 -182977783 - L2 LINE L2 0 3313 3083 997 289 28 33 chr4 19350634 19350953 -182977394 - L2 LINE L2 -248 3065 2750 2070 87 10 7 chr4 19350953 19351241 -182977106 - AluY SINE Alu -13 298 10 997 289 28 33 chr4 19351241 19351355 -182976992 - L2 LINE L2 -563 2750 2637 311 250 24 0 chr4 19351388 19351472 -182976875 + MLT1J2 LTR MaLR 67 152 -298 1140 214 36 50 chr4 19351472 19351914 -182976433 - LTR47B LTR ERVL 0 443 9 997 289 28 35 chr4 19352483 19352781 -182975566 - L2 LINE L2 -269 3044 2750 2403 65 0 3 chr4 19352781 19353071 -182975276 - AluY SINE Alu -13 298 10 997 289 28 35 chr4 19353071 19353185 -182975162 - L2 LINE L2 -563 2750 2637 495 247 43 52 chr4 19353218 19353302 -182975045 + MLT1J2 LTR MaLR 67 150 -300 1397 202 49 64 chr4 19353302 19353752 -182974595 - LTR47B LTR ERVL 0 443 1 495 247 43 52 chr4 19353752 19353972 -182974375 + MLT1J2 LTR MaLR 150 450 0 2377 295 110 15 chr4 19353972 19354918 -182973429 - L2 LINE L2 -678 2636 1601 600 85 0 12 chr4 19354986 19355068 -182973279 - 7SLRNA srpRNA srpRNA -10 310 230 189 132 0 0 chr4 19355227 19355265 -182973082 + (CA)n Simple_repeat Simple_repeat 1 38 0 234 215 42 125 chr4 19355463 19355607 -182972740 - L1ME2 LINE L1 -9 6155 6024 296 237 84 5 chr4 19355610 19355740 -182972607 - L1MB7 LINE L1 -226 5938 5803 302 378 13 19 chr4 19356833 19356989 -182971358 - MIR SINE MIR -41 221 67 239 317 125 9 chr4 19358172 19358595 -182969752 + HAL1 LINE L1 1109 1580 -927 1066 229 16 29 chr4 19358661 19358906 -182969441 + AluJo SINE Alu 67 308 -4 243 243 144 33 chr4 19359056 19359451 -182968896 + L1ME LINE L1 2861 3299 -2847 29 0 0 0 chr4 19359716 19359745 -182968602 + AT_rich Low_complexity Low_complexity 1 29 0 356 303 76 14 chr4 19359767 19359912 -182968435 + L1ME LINE L1 3697 3850 -2296 1678 117 12 4 chr4 19359965 19360205 -182968142 + AluSq SINE Alu 16 257 -56 250 45 45 0 chr4 19360210 19360254 -182968093 + (CAAA)n Simple_repeat Simple_repeat 4 49 0 470 238 50 0 chr4 19360365 19360466 -182967881 - MER81 DNA DNA 0 114 9 659 313 89 72 chr4 19360670 19361693 -182966654 + L1ME LINE L1 4258 5335 -811 382 344 75 24 chr4 19361723 19362139 -182966208 + L1ME LINE L1 5374 5810 -360 2876 210 45 22 chr4 19362167 19362457 -182965890 - MER82 DNA MER2_type 0 653 371 5729 41 26 4 chr4 19362457 19363184 -182965163 - L1PA4 LINE L1 0 6155 5413 2876 210 45 22 chr4 19363184 19363530 -182964817 - MER82 DNA MER2_type -282 371 2 263 143 0 36 chr4 19363531 19363587 -182964760 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 23 0 0 0 chr4 19363895 19363918 -182964429 + AT_rich Low_complexity Low_complexity 1 23 0 1910 160 7 0 chr4 19364033 19364327 -182964020 - AluSx SINE Alu -11 301 6 590 162 73 7 chr4 19364476 19364612 -182963735 + L1MC3 LINE L1 7610 7754 -31 288 305 217 18 chr4 19364790 19365016 -182963331 + L3 LINE CR1 1232 1502 -75 296 319 7 58 chr4 19365143 19365281 -182963066 - L2 LINE L2 0 3313 3183 187 258 72 103 chr4 19365883 19365980 -182962367 - MIR SINE MIR -141 121 28 277 364 7 49 chr4 19366040 19366183 -182962164 - L2 LINE L2 0 3272 3136 1476 209 0 0 chr4 19366241 19366494 -182961853 + AluJo SINE Alu 22 274 -38 960 266 70 3 chr4 19366702 19367029 -182961318 - L1M4 LINE L1 -1128 5018 4670 1050 132 24 0 chr4 19367053 19367220 -182961127 - THE1C LTR MaLR -202 173 3 8129 116 48 15 chr4 19367226 19368457 -182959890 - THE1C-int LTR MaLR -11 1569 299 1769 226 39 20 chr4 19368454 19368945 -182959402 + L1M4 LINE L1 4550 5049 -1097 * 22 0 0 0 chr4 19369097 19369119 -182959228 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 19369215 19369235 -182959112 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 225 0 0 0 chr4 19370795 19370820 -182957527 + (T)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr4 19370921 19370945 -182957402 + AT_rich Low_complexity Low_complexity 1 24 0 361 341 34 23 chr4 19371106 19371282 -182957065 + MIR SINE MIR 50 227 -35 22 35 0 0 chr4 19371304 19371333 -182957014 + AT_rich Low_complexity Low_complexity 1 29 0 203 255 39 0 chr4 19371902 19371953 -182956394 - MIR SINE MIR -54 208 156 226 268 18 0 chr4 19372328 19372384 -182955963 - L2 LINE L2 0 3313 3257 6095 95 36 2 chr4 19372427 19372882 -182955465 - L1PA14 LINE L1 -3 6158 5720 2527 123 0 3 chr4 19372882 19373247 -182955100 - THE1B LTR MaLR 0 364 1 6095 95 36 2 chr4 19373247 19374757 -182953590 - L1PA14 LINE L1 -441 5720 4157 8110 154 18 29 chr4 19374757 19376201 -182952146 + L1PA12 LINE L1 1826 3241 -4343 5901 25 33 1 chr4 19376201 19376781 -182951566 + L1PA4 LINE L1 5411 6020 -135 189 0 0 0 chr4 19376781 19376802 -182951545 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 5901 25 33 1 chr4 19376802 19376940 -182951407 + L1PA4 LINE L1 6020 6152 -3 8110 154 18 29 chr4 19376940 19377278 -182951069 + L1PA12 LINE L1 3241 3581 -4003 801 132 85 58 chr4 19377278 19377467 -182950880 + MER3 DNA MER1_type 10 203 -6 21 57 0 0 chr4 19377851 19377886 -182950461 + AT_rich Low_complexity Low_complexity 1 35 0 314 348 66 6 chr4 19377993 19378174 -182950173 + L2 LINE L2 2768 2959 -355 474 248 102 39 chr4 19378235 19378441 -182949906 + L2 LINE L2 3095 3313 0 311 286 82 53 chr4 19378834 19379005 -182949342 + MIR SINE MIR 12 187 -75 8062 176 34 28 chr4 19379460 19382331 -182946016 + L1PA8 LINE L1 11 3826 -3758 32801 40 2 1 chr4 19382334 19387176 -182941171 + L1PA4 LINE L1 1336 6182 0 19079 111 5 2 chr4 19387177 19390928 -182937419 + L1PA8 LINE L1 3818 7596 -14 561 288 41 54 chr4 19391283 19391578 -182936769 + L2 LINE L2 2947 3237 -76 261 0 0 0 chr4 19391626 19391655 -182936692 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 424 304 27 20 chr4 19392593 19392741 -182935606 - MIR SINE MIR -100 162 14 272 288 120 33 chr4 19393686 19393870 -182934477 + MIR SINE MIR 63 262 0 580 282 40 83 chr4 19393946 19394073 -182934274 - L2 LINE L2 0 3313 3182 2248 196 34 16 chr4 19394073 19394569 -182933778 - MLT1D LTR MaLR 0 505 1 580 282 40 83 chr4 19394569 19394767 -182933580 - L2 LINE L2 -131 3182 3002 1232 202 108 38 chr4 19394797 19395138 -182933209 + MLT1A1 LTR MaLR 1 365 0 306 131 0 0 chr4 19395904 19395965 -182932382 - L1PA16 LINE L1 -8 6158 6098 4550 134 3 8 chr4 19395966 19396677 -182931670 - L1PA16 LINE L1 -105 6061 5355 614 264 18 6 chr4 19396696 19396863 -182931484 + MIR SINE MIR 89 257 -5 2305 96 3 6 chr4 19397050 19397362 -182930985 + AluSq SINE Alu 3 313 0 24 32 0 0 chr4 19397608 19397639 -182930708 + AT_rich Low_complexity Low_complexity 1 31 0 513 279 81 25 chr4 19398116 19398439 -182929908 + L1M4 LINE L1 2231 2571 -3575 21 0 0 0 chr4 19398439 19398460 -182929887 + AT_rich Low_complexity Low_complexity 1 21 0 211 409 0 11 chr4 19398511 19398599 -182929748 - L3 LINE CR1 -102 1475 1389 215 338 0 0 chr4 19398663 19398737 -182929610 - MIR SINE MIR -105 103 30 402 354 51 29 chr4 19400159 19400475 -182927872 - L2 LINE L2 -2571 743 421 290 333 38 38 chr4 19400998 19401130 -182927217 + MIR3 SINE MIR 2 133 -75 213 282 24 89 chr4 19401481 19401605 -182926742 + MIR SINE MIR 92 207 -55 251 275 9 0 chr4 19402855 19402964 -182925383 + CT-rich Low_complexity Low_complexity 2 111 0 2238 175 60 38 chr4 19403356 19403859 -182924488 - MER67D LTR ERV1 0 514 1 888 285 50 42 chr4 19403923 19404284 -182924063 - MLT1K LTR MaLR -44 544 181 3198 34 3 0 chr4 19404998 19405380 -182922967 - L1PA3 LINE L1 -3 6152 5770 239 283 20 71 chr4 19405754 19405853 -182922494 + MIR SINE MIR 54 147 -61 282 29 0 0 chr4 19406526 19406561 -182921786 + (TG)n Simple_repeat Simple_repeat 2 36 0 1849 142 26 29 chr4 19406595 19406906 -182921441 + AluSx SINE Alu 3 312 0 353 312 101 17 chr4 19406960 19407200 -182921147 - MLT1J2 LTR MaLR -170 276 1 536 309 39 11 chr4 19408457 19408638 -182919709 - MIR SINE MIR -6 256 71 838 288 75 69 chr4 19409182 19410048 -182918299 + L1MEc LINE L1 311 1181 -5215 271 143 0 36 chr4 19410116 19410172 -182918175 + L1MC1 LINE L1 6280 6333 0 2040 229 65 22 chr4 19410173 19410851 -182917496 + L1MEc LINE L1 2343 3049 -3166 1182 231 61 26 chr4 19410853 19411195 -182917152 - MLT1A2 LTR MaLR -2 372 19 3883 190 14 1 chr4 19411258 19411989 -182916358 - L1MB3 LINE L1 -124 6059 5320 443 243 32 11 chr4 19411985 19412174 -182916173 + L1MEc LINE L1 3072 3264 -2951 * 218 363 0 0 chr4 19412243 19412323 -182916024 + L2 LINE L2 3230 3309 -4 216 324 78 29 chr4 19414503 19414605 -182913742 - MIR SINE MIR -70 138 32 240 309 167 29 chr4 19414883 19415086 -182913261 - MIR SINE MIR -22 240 6 322 318 11 0 chr4 19415110 19415198 -182913149 - MIR SINE MIR -116 146 58 288 263 53 84 chr4 19416753 19416943 -182911404 - L1ME LINE L1 -336 5785 5602 258 312 56 91 chr4 19417177 19417338 -182911009 - MIR SINE MIR -20 242 90 906 172 60 51 chr4 19417338 19417553 -182910794 - MER20 DNA MER1_type 0 219 3 258 312 56 91 chr4 19417553 19417622 -182910725 - MIR SINE MIR -172 90 20 493 263 26 26 chr4 19417927 19418079 -182910268 + MIR SINE MIR 9 160 -102 1694 175 38 56 chr4 19418079 19418474 -182909873 - MLT1B LTR MaLR -2 388 1 2009 73 0 0 chr4 19418520 19418779 -182909568 - L1PA12 LINE L1 -2 6166 5908 1277 60 18 0 chr4 19418779 19418946 -182909401 + L1P4 LINE L1 5424 5593 -575 1574 136 4 4 chr4 19419034 19419291 -182909056 - L1PA16 LINE L1 -9 6157 5901 230 298 0 0 chr4 19419646 19419730 -182908617 + (TA)n Simple_repeat Simple_repeat 2 85 0 410 285 111 31 chr4 19419820 19420171 -182908176 - L1ME4a LINE L1 -213 5908 5530 1694 166 3 30 chr4 19420616 19420917 -182907430 + AluJb SINE Alu 12 304 -8 377 284 146 44 chr4 19421151 19421604 -182906743 - L1ME LINE L1 -367 5754 5255 250 255 94 38 chr4 19421639 19421745 -182906602 - L2 LINE L2 -589 2725 2614 25 65 0 0 chr4 19421856 19421902 -182906445 + AT_rich Low_complexity Low_complexity 1 46 0 1332 273 69 34 chr4 19422097 19422244 -182906103 - MLT1J LTR MaLR 0 511 371 2177 129 0 3 chr4 19422244 19422547 -182905800 - AluSq SINE Alu -11 302 1 1332 273 69 34 chr4 19422547 19422893 -182905454 - MLT1J LTR MaLR -140 371 1 254 313 12 0 chr4 19423047 19423127 -182905220 + MIR3 SINE MIR 114 194 -14 416 165 13 0 chr4 19424052 19424131 -182904216 - MER116 DNA Mariner 0 80 1 363 78 0 0 chr4 19424266 19424317 -182904030 + (TA)n Simple_repeat Simple_repeat 2 52 0 26 50 0 0 chr4 19424356 19424396 -182903951 + AT_rich Low_complexity Low_complexity 1 40 0 320 0 25 0 chr4 19424797 19424837 -182903510 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 237 312 70 21 chr4 19426032 19426132 -182902215 + MIR SINE MIR 3 107 -101 2425 64 0 0 chr4 19426318 19426615 -182901732 - AluY SINE Alu -14 297 1 248 394 43 22 chr4 19426710 19426941 -182901406 - L2 LINE L2 -89 3183 2948 235 204 56 0 chr4 19427116 19427170 -182901177 - MER58 DNA MER1_type -2140 280 224 448 172 11 23 chr4 19427232 19427319 -182901028 + MIR SINE MIR 69 154 -108 1821 268 82 30 chr4 19427956 19428819 -182899528 + L1ME1 LINE L1 36 943 -5453 4624 244 75 39 chr4 19428825 19430191 -182898156 + L1ME1 LINE L1 989 2305 -3910 469 139 13 0 chr4 19430191 19430270 -182898077 + MADE1 DNA Mariner 1 80 0 4624 244 75 39 chr4 19430270 19431963 -182896384 + L1ME1 LINE L1 2305 4142 -2073 2484 119 17 6 chr4 19431963 19432323 -182896024 - THE1B LTR MaLR 0 364 1 4624 244 75 39 chr4 19432323 19432482 -182895865 + L1ME1 LINE L1 4142 4294 -1921 2436 208 127 51 chr4 19432478 19432496 -182895851 + L1ME1 LINE L1 5399 5414 -821 * 2089 160 20 3 chr4 19432496 19432852 -182895495 + MLT1A1 LTR MaLR 3 364 -1 2436 208 127 51 chr4 19432852 19433603 -182894744 + L1ME1 LINE L1 5414 6227 -8 230 274 147 11 chr4 19435179 19435274 -182893073 - L2 LINE L2 -2 3311 3204 444 343 11 17 chr4 19436192 19436373 -182891974 - MIR SINE MIR -34 228 49 616 289 83 4 chr4 19436523 19436765 -182891582 + MIR SINE MIR 2 262 0 24 32 0 0 chr4 19437008 19437039 -182891308 + AT_rich Low_complexity Low_complexity 1 31 0 2254 98 0 0 chr4 19437094 19437403 -182890944 - AluSq SINE Alu 0 309 1 388 306 20 48 chr4 19437578 19437725 -182890622 - MIR3 SINE MIR -10 198 56 310 278 0 0 chr4 19437925 19437997 -182890350 - MIR SINE MIR 0 262 191 1891 190 35 47 chr4 19438319 19438783 -182889564 + LTR55 LTR ERV 1 458 -90 3132 171 23 18 chr4 19440532 19441133 -182887214 + MER6A DNA MER2_type 1 604 -1 422 307 58 54 chr4 19441192 19441397 -182886950 + MIR SINE MIR 21 228 -34 441 284 139 29 chr4 19441676 19441884 -182886463 - MIR SINE MIR -18 244 14 339 338 15 15 chr4 19442280 19442416 -182885931 - MIR3 SINE MIR -4 204 69 474 233 94 19 chr4 19443310 19443469 -182884878 + MLT1J2 LTR MaLR 5 175 -275 265 266 38 0 chr4 19443618 19443697 -182884650 + MLT1I LTR MaLR 305 386 -23 851 272 16 20 chr4 19444329 19444579 -182883768 - MIR SINE MIR -13 249 1 500 272 94 19 chr4 19444611 19444824 -182883523 - MIR SINE MIR -3 259 31 187 315 9 117 chr4 19444984 19445095 -182883252 + L2 LINE L2 2944 3042 -230 215 267 33 0 chr4 19445853 19445913 -182882434 + CT-rich Low_complexity Low_complexity 4 65 0 2203 180 64 104 chr4 19446520 19447193 -182881154 - MLT1E1 LTR MaLR 0 654 9 1305 262 69 10 chr4 19447470 19448140 -182880207 - L2 LINE L2 0 3313 2598 730 251 80 42 chr4 19448164 19448550 -182879797 - MER65A LTR ERV1 -44 401 1 828 294 83 65 chr4 19448551 19449010 -182879337 - MLT1E2 LTR MaLR -156 470 4 255 152 0 0 chr4 19449016 19449062 -182879285 + (CA)n Simple_repeat Simple_repeat 1 46 0 2243 208 64 17 chr4 19449154 19449688 -182878659 - MER21B LTR ERV1 -58 805 247 351 223 5 10 chr4 19449925 19450141 -182878206 + A-rich Low_complexity Low_complexity 1 214 0 6983 173 14 31 chr4 19450159 19451659 -182876688 + L1P LINE L1 847 2321 -3825 23 0 0 0 chr4 19453148 19453171 -182875176 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 19453259 19453287 -182875060 + AT_rich Low_complexity Low_complexity 1 28 0 201 147 0 0 chr4 19453397 19453431 -182874916 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 3909 132 58 0 chr4 19453646 19454282 -182874065 + L1PA14 LINE L1 5484 6156 -5 2170 118 0 3 chr4 19454284 19454581 -182873766 + AluSc SINE Alu 1 296 -13 734 219 85 0 chr4 19454641 19454805 -182873542 + AluJo SINE Alu 118 295 -17 33156 69 82 2 chr4 19455719 19460195 -182868152 - L1P LINE L1 -1308 4838 2 248 331 13 7 chr4 19460370 19460524 -182867823 + L1M4 LINE L1 4456 4610 -1536 659 320 71 56 chr4 19460537 19461018 -182867329 + L2 LINE L2 2824 3311 -2 1364 165 112 8 chr4 19461239 19461499 -182866848 - L1MC1 LINE L1 -17 6316 6030 980 198 26 0 chr4 19461499 19461691 -182866656 + MIR SINE MIR 66 262 0 988 231 30 0 chr4 19461819 19462083 -182866264 + L1MA4 LINE L1 6024 6295 -5 217 323 20 20 chr4 19462379 19462478 -182865869 - L2 LINE L2 -5 3267 3169 205 313 227 23 chr4 19462955 19463083 -182865264 - L2 LINE L2 -5 3267 3114 344 257 59 20 chr4 19463358 19463459 -182864888 + L2 LINE L2 2425 2529 -785 316 305 0 0 chr4 19463499 19463581 -182864766 - MER5B DNA MER1_type -89 89 8 1491 178 36 7 chr4 19463681 19463957 -182864390 - MER67A LTR ERV1 -251 292 9 436 216 57 0 chr4 19464096 19464184 -182864163 - MER5A DNA MER1_type -83 106 14 377 376 93 26 chr4 19464199 19464814 -182863533 + L2 LINE L2 2607 3270 -2 236 259 35 0 chr4 19465398 19465456 -182862891 + L2 LINE L2 2910 2969 -303 251 270 16 0 chr4 19465523 19465586 -182862761 + CT-rich Low_complexity Low_complexity 2 65 0 257 354 0 0 chr4 19465594 19465693 -182862654 + MIR SINE MIR 163 261 -1 1244 159 48 0 chr4 19466382 19466589 -182861758 + Tigger5 DNA MER2_type 2107 2323 0 23 0 0 0 chr4 19466868 19466891 -182861456 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr4 19467263 19467292 -182861055 + AT_rich Low_complexity Low_complexity 1 29 0 2258 113 3 0 chr4 19467293 19467595 -182860752 - AluSq SINE Alu -10 303 1 275 241 90 35 chr4 19467925 19468070 -182860277 + HAL1 LINE L1 2241 2393 -114 947 115 11 22 chr4 19468227 19468277 -182860070 + (GGAA)n Simple_repeat Simple_repeat 1 229 0 947 115 11 22 chr4 19468277 19468459 -182859888 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 195 204 0 0 chr4 19469783 19469827 -182858520 + GA-rich Low_complexity Low_complexity 2 45 0 490 248 135 55 chr4 19469909 19470183 -182858164 - Charlie7 DNA MER1_type -1947 665 370 1813 146 25 0 chr4 19470812 19471129 -182857218 + AluSq SINE Alu 1 324 0 472 367 57 64 chr4 19471891 19472330 -182856017 - L2 LINE L2 0 3272 2837 1921 134 0 7 chr4 19473090 19473374 -182854973 - AluSx SINE Alu -17 295 14 187 333 83 19 chr4 19473392 19473500 -182854847 + MIR SINE MIR 119 233 -29 1616 224 25 25 chr4 19474671 19475037 -182853310 + MLT1A2 LTR MaLR 1 366 -8 193 336 9 56 chr4 19475531 19475638 -182852709 - MIR SINE MIR -59 149 48 280 231 37 37 chr4 19476039 19476147 -182852200 + L1M4 LINE L1 2476 2583 -3563 437 275 146 61 chr4 19476212 19476444 -182851903 + L1M4 LINE L1 2672 2950 -3196 2173 108 0 19 chr4 19476444 19476751 -182851596 - AluSx SINE Alu -11 301 1 437 275 146 61 chr4 19476751 19476896 -182851451 + L1M4 LINE L1 2950 3081 -3065 575 323 46 13 chr4 19477849 19478147 -182850200 + L2 LINE L2 2751 3057 -256 2297 70 3 3 chr4 19478196 19478482 -182849865 + AluY SINE Alu 1 286 -25 1727 215 71 24 chr4 19478693 19479074 -182849273 - MER74A LTR ERVL -39 519 121 1784 170 6 25 chr4 19479241 19479558 -182848789 - AluSx SINE Alu -1 311 1 400 245 64 75 chr4 19479558 19479746 -182848601 + L2 LINE L2 3123 3308 -5 332 274 69 0 chr4 19482193 19482295 -182846052 - MIR SINE MIR -32 230 122 245 239 55 46 chr4 19482836 19482945 -182845402 - MIR SINE MIR -136 126 17 5085 156 37 32 chr4 19483268 19484837 -182843510 - pTR5 LTR ERV1 0 2438 731 232 222 0 0 chr4 19485849 19485894 -182842453 - L2 LINE L2 -15 3298 3254 357 317 27 60 chr4 19488076 19488259 -182840088 - MIR SINE MIR -56 206 30 319 360 57 35 chr4 19489003 19489317 -182839030 - MARNA DNA Mariner -144 442 122 2197 102 0 7 chr4 19489352 19489645 -182838702 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr4 19489658 19489679 -182838668 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr4 19489693 19489732 -182838615 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 555 273 0 0 chr4 19489911 19490039 -182838308 + MIR SINE MIR 50 177 -85 350 257 66 40 chr4 19490060 19490212 -182838135 - L2 LINE L2 0 3313 3158 1137 266 41 25 chr4 19490257 19490577 -182837770 - LTR40a LTR ERVL -194 325 1 490 239 22 30 chr4 19490579 19490713 -182837634 + MER5A DNA MER1_type 57 189 0 236 98 0 24 chr4 19491958 19491999 -182836348 + (GA)n Simple_repeat Simple_repeat 1 40 0 595 283 35 33 chr4 19492855 19493167 -182835180 - MLT1H LTR MaLR -195 354 8 286 321 152 24 chr4 19494013 19494246 -182834101 - MIR SINE MIR -6 256 3 508 260 43 58 chr4 19494886 19495094 -182833253 + MIR SINE MIR 2 206 -56 248 267 33 0 chr4 19495134 19495194 -182833153 - MER91 DNA MER1_type -1 139 78 306 292 124 7 chr4 19496248 19496385 -182831962 - MIR SINE MIR -26 236 84 774 228 7 0 chr4 19496552 19496701 -182831646 - MER58A DNA MER1_type -32 192 43 189 425 8 24 chr4 19497624 19497751 -182830596 - L2 LINE L2 -679 2635 2511 230 250 29 15 chr4 19498030 19498098 -182830249 + MLT1H LTR MaLR 21 89 -460 1657 146 101 51 chr4 19498167 19498523 -182829824 + THE1C LTR MaLR 2 375 0 372 247 65 111 chr4 19498523 19498847 -182829500 + MLT1H LTR MaLR 209 517 -32 184 273 36 0 chr4 19499222 19499277 -182829070 + L2 LINE L2 3221 3277 -36 183 129 0 0 chr4 19499978 19500009 -182828338 + (TCCC)n Simple_repeat Simple_repeat 2 32 0 630 141 13 32 chr4 19500018 19500174 -182828173 + CT-rich Low_complexity Low_complexity 3 155 0 980 107 6 17 chr4 19500174 19500352 -182827995 + (TTTC)n Simple_repeat Simple_repeat 1 176 0 1493 155 12 8 chr4 19500384 19500629 -182827718 + L1PA16 LINE L1 5905 6150 -16 528 300 30 35 chr4 19500773 19500973 -182827374 - MIR SINE MIR -42 220 22 498 279 61 37 chr4 19501073 19501468 -182826879 - MLT1H LTR MaLR -17 578 61 2063 118 3 22 chr4 19501709 19502024 -182826323 + AluSc SINE Alu 1 309 0 192 158 0 0 chr4 19502106 19502144 -182826203 + (TTA)n Simple_repeat Simple_repeat 1 38 0 2336 97 0 0 chr4 19502929 19503228 -182825119 + AluSg SINE Alu 1 299 -11 257 263 53 18 chr4 19503322 19503436 -182824911 + MIR SINE MIR 89 206 -56 519 246 364 30 chr4 19503662 19504134 -182824213 + L2 LINE L2 1886 2515 -799 517 224 26 0 chr4 19504180 19504296 -182824051 + MLT1H LTR MaLR 43 161 -388 2144 188 10 3 chr4 19504329 19504712 -182823635 + MER89 LTR ERV1 172 557 -2 322 240 0 164 chr4 19504720 19504891 -182823456 + MLT1H LTR MaLR 165 307 -242 898 168 27 0 chr4 19505343 19505492 -182822855 - Tigger3b DNA MER2_type 0 1231 1079 4372 116 96 113 chr4 19505494 19506916 -182821431 - pTR5 LTR ERV1 0 2438 750 4451 156 181 2 chr4 19506916 19507841 -182820506 - Tigger3b DNA MER2_type -141 1090 1 189 290 87 0 chr4 19508652 19508721 -182819626 + MIR SINE MIR 78 152 -56 221 309 52 41 chr4 19508845 19508942 -182819405 - L2 LINE L2 -3 3269 3172 256 346 10 10 chr4 19508970 19509071 -182819276 - MIR SINE MIR -161 101 1 224 269 0 19 chr4 19509631 19509683 -182818664 + L2 LINE L2 3210 3260 -12 185 255 0 20 chr4 19509856 19509907 -182818440 - MIR SINE MIR -111 151 102 304 309 89 18 chr4 19510425 19510593 -182817754 - MIR SINE MIR -32 230 51 200 333 72 69 chr4 19511398 19511746 -182816601 + L2 LINE L2 2396 2744 -570 701 211 8 8 chr4 19511782 19511915 -182816432 + FLAM_C SINE Alu 1 133 0 5749 157 17 11 chr4 19511963 19513236 -182815111 + L1PA16 LINE L1 4885 6166 0 452 399 47 39 chr4 19513287 19513693 -182814654 + L2 LINE L2 2863 3271 -1 283 327 96 19 chr4 19513787 19513943 -182814404 + L2 LINE L2 2926 3093 -179 4081 73 68 9 chr4 19514021 19514597 -182813750 + L1PA7 LINE L1 5544 6153 -1 271 259 114 30 chr4 19514734 19514865 -182813482 + L2 LINE L2 3168 3309 -4 1638 114 9 0 chr4 19515391 19515610 -182812737 - AluSg/x SINE Alu -17 295 75 493 296 122 14 chr4 19515667 19515880 -182812467 + MIR SINE MIR 2 237 -25 201 241 0 56 chr4 19515852 19515906 -182812441 + L2 LINE L2 3255 3305 -8 * 39 68 0 0 chr4 19516390 19516464 -182811883 + AT_rich Low_complexity Low_complexity 1 74 0 1600 160 26 3 chr4 19516707 19517019 -182811328 + MER33 DNA MER1_type 2 320 -4 206 353 0 35 chr4 19517048 19517133 -182811214 - L2 LINE L2 -13 3259 3178 222 358 63 34 chr4 19517196 19517345 -182811002 + MIR SINE MIR 2 153 -65 777 271 33 9 chr4 19517621 19517835 -182810512 - MIR SINE MIR -41 221 3 520 330 89 44 chr4 19517940 19518301 -182810046 - L2 LINE L2 -438 2876 2500 30 0 0 0 chr4 19519026 19519056 -182809291 + AT_rich Low_complexity Low_complexity 1 30 0 2331 99 0 10 chr4 19519203 19519506 -182808841 - AluSq SINE Alu -13 300 1 347 307 101 11 chr4 19519600 19519779 -182808568 + L3 LINE CR1 670 864 -713 734 259 23 0 chr4 19520876 19521050 -182807297 - MER45A DNA AcHobo 0 178 1 1989 125 71 48 chr4 19521464 19521816 -182806531 + THE1B LTR MaLR 1 360 -4 353 259 43 58 chr4 19521824 19521963 -182806384 + MIR SINE MIR 60 196 -66 345 320 63 46 chr4 19522564 19522739 -182805608 + L2 LINE L2 2214 2391 -923 191 328 45 15 chr4 19523134 19523201 -182805146 - L2 LINE L2 -183 3089 3021 623 289 146 36 chr4 19523487 19523843 -182804504 - L2 LINE L2 0 3313 2919 303 383 35 0 chr4 19523895 19524036 -182804311 - L2 LINE L2 -589 2725 2580 201 74 0 0 chr4 19525252 19525279 -182803068 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 459 0 0 0 chr4 19525278 19525329 -182803018 + (GA)n Simple_repeat Simple_repeat 2 52 0 1732 163 11 22 chr4 19525330 19525606 -182802741 - AluJo SINE Alu -37 275 3 1199 268 71 39 chr4 19526102 19526249 -182802098 - MLT1J LTR MaLR 0 511 370 2212 129 0 3 chr4 19526249 19526552 -182801795 - AluSq SINE Alu -11 302 1 1199 268 71 39 chr4 19526552 19526871 -182801476 - MLT1J LTR MaLR -141 370 30 1069 329 101 14 chr4 19527020 19527592 -182800755 - L2 LINE L2 -1092 2222 1601 600 85 0 12 chr4 19527660 19527742 -182800605 - 7SLRNA srpRNA srpRNA -10 310 230 189 132 0 0 chr4 19527901 19527939 -182800408 + (CA)n Simple_repeat Simple_repeat 1 38 0 259 212 40 119 chr4 19528130 19528281 -182800066 - L1ME2 LINE L1 -2 6162 6024 1114 259 47 8 chr4 19528284 19528666 -182799681 - L1ME2 LINE L1 -226 5938 5542 513 324 75 24 chr4 19528719 19529507 -182798840 - L1ME2 LINE L1 -1786 4360 3533 258 105 0 0 chr4 19529511 19529549 -182798798 + (TG)n Simple_repeat Simple_repeat 2 39 0 212 68 0 68 chr4 19529663 19529707 -182798640 + (TG)n Simple_repeat Simple_repeat 1 41 0 27 0 0 0 chr4 19529784 19529811 -182798536 + AT_rich Low_complexity Low_complexity 1 27 0 1070 243 39 50 chr4 19529886 19530248 -182798099 + L2 LINE L2 1327 1684 -1630 545 97 62 9 chr4 19530450 19530563 -182797784 + CT-rich Low_complexity Low_complexity 1 119 0 234 302 71 40 chr4 19530664 19530790 -182797557 + MLT1J2 LTR MaLR 284 413 -37 355 375 27 0 chr4 19530879 19530991 -182797356 - L2 LINE L2 -167 3105 2991 200 204 74 0 chr4 19530997 19531051 -182797296 + L2 LINE L2 3255 3312 -1 189 0 0 0 chr4 19532138 19532159 -182796188 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 243 0 0 0 chr4 19532158 19532185 -182796162 + (CA)n Simple_repeat Simple_repeat 1 27 0 303 122 0 0 chr4 19532288 19532337 -182796010 + (TG)n Simple_repeat Simple_repeat 1 49 0 198 291 91 36 chr4 19532614 19532724 -182795623 - L2 LINE L2 -5 3308 3193 3639 82 56 0 chr4 19533305 19533819 -182794528 - L1PA8 LINE L1 -15 6157 5615 25 31 0 0 chr4 19533936 19533968 -182794379 + AT_rich Low_complexity Low_complexity 1 32 0 792 286 103 11 chr4 19533977 19534344 -182794003 - MLT1J2 LTR MaLR 0 450 50 189 353 131 13 chr4 19534493 19534646 -182793701 + MIR SINE MIR 58 228 -34 214 308 68 15 chr4 19535786 19535897 -182792450 + MIR SINE MIR 49 146 -62 193 107 0 0 chr4 19536025 19536053 -182792294 - L2 LINE L2 -17 3255 3228 305 292 11 0 chr4 19536429 19536518 -182791829 - MLT1K LTR MaLR -342 246 157 202 309 54 54 chr4 19536596 19536764 -182791583 - L2 LINE L2 -213 3059 2892 249 355 50 16 chr4 19536894 19537015 -182791332 + L2 LINE L2 3143 3267 -5 278 303 78 35 chr4 19537039 19537181 -182791166 - MIR SINE MIR 0 262 115 371 350 56 6 chr4 19537327 19537487 -182790860 - MIR SINE MIR -75 187 20 23 0 0 0 chr4 19537562 19537585 -182790762 + AT_rich Low_complexity Low_complexity 1 23 0 1242 103 49 5 chr4 19537801 19538004 -182790343 - L1PB1 LINE L1 0 6151 5940 1860 126 95 31 chr4 19538087 19538436 -182789911 + THE1C LTR MaLR 5 375 0 203 344 0 0 chr4 19538698 19538759 -182789588 - MIR SINE MIR -3 259 199 378 310 18 58 chr4 19540149 19540320 -182788027 - MIR SINE MIR -52 210 47 191 353 68 45 chr4 19540471 19540692 -182787655 + L2 LINE L2 2817 3042 -230 323 288 188 0 chr4 19540721 19540891 -182787456 + MIR SINE MIR 58 259 -3 234 0 0 0 chr4 19541007 19541033 -182787314 + (CA)n Simple_repeat Simple_repeat 2 27 0 5430 37 0 0 chr4 19541736 19542386 -182785961 - L1PA4 LINE L1 -3 6152 5503 1170 33 0 0 chr4 19542386 19542537 -182785810 + L1PA4 LINE L1 5337 5487 -668 299 345 31 5 chr4 19542682 19542873 -182785474 + HERV16 LTR ERVL 731 926 -4070 2348 103 3 0 chr4 19542927 19543239 -182785108 - AluSp SINE Alu 0 313 1 497 336 93 28 chr4 19543576 19544156 -182784191 + HERV16 LTR ERVL 2159 2776 -2988 359 356 17 11 chr4 19544265 19544442 -182783905 + HERV16 LTR ERVL 3545 3722 -1932 1757 167 6 35 chr4 19545112 19545423 -182782924 + AluSx SINE Alu 1 302 -10 33 43 0 0 chr4 19545463 19545510 -182782837 + AT_rich Low_complexity Low_complexity 1 47 0 218 373 45 8 chr4 19545581 19545715 -182782632 + MIR SINE MIR 59 197 -65 190 351 0 13 chr4 19546684 19546761 -182781586 + MIR SINE MIR 68 143 -65 2144 62 0 0 chr4 19546775 19547031 -182781316 - AluSc SINE Alu -15 294 39 201 328 15 15 chr4 19547173 19547240 -182781107 + MIR SINE MIR 37 103 -105 429 20 0 0 chr4 19548040 19548090 -182780257 + (CA)n Simple_repeat Simple_repeat 1 50 0 194 208 19 0 chr4 19548358 19548411 -182779936 + (TA)n Simple_repeat Simple_repeat 2 55 0 2177 118 0 0 chr4 19548472 19548768 -182779579 - AluSc SINE Alu -13 296 1 234 0 0 0 chr4 19548798 19548824 -182779523 + (TG)n Simple_repeat Simple_repeat 2 27 0 339 44 0 0 chr4 19549502 19549547 -182778800 + (CA)n Simple_repeat Simple_repeat 1 45 0 546 297 28 7 chr4 19549704 19549849 -182778498 - MIR SINE MIR -92 170 23 197 371 82 0 chr4 19551165 19551262 -182777085 - MIR3 SINE MIR -11 197 93 499 237 11 0 chr4 19552188 19552365 -182775982 + (TG)n Simple_repeat Simple_repeat 2 180 0 219 303 45 68 chr4 19553654 19553786 -182774561 - MIR3 SINE MIR -73 135 7 * 418 336 72 24 chr4 19553782 19553990 -182774357 - L2 LINE L2 -4 3309 3092 1867 216 76 2 chr4 19555299 19555734 -182772613 + MLT1C LTR MaLR 1 467 0 2237 119 0 0 chr4 19557419 19557714 -182770633 + AluSx SINE Alu 1 295 -17 262 281 16 0 chr4 19557722 19557786 -182770561 + MIR SINE MIR 53 117 -145 579 354 196 20 chr4 19558240 19558796 -182769551 + L2 LINE L2 2063 2716 -598 1051 280 22 73 chr4 19558938 19559431 -182768916 - LTR33 LTR ERVL 0 521 54 3306 143 30 0 chr4 19559738 19560276 -182768071 - MER41C LTR ERV1 0 554 1 264 259 12 49 chr4 19560351 19560432 -182767915 + L2 LINE L2 3236 3313 0 198 329 29 0 chr4 19561531 19561601 -182766746 - MIR SINE MIR -3 259 188 333 294 155 45 chr4 19561608 19562091 -182766256 - MLT1H LTR MaLR -13 536 1 252 258 0 0 chr4 19562093 19562155 -182766192 - MIR SINE MIR -52 210 149 457 172 35 0 chr4 19562161 19562248 -182766099 + MLT1A1 LTR MaLR 6 95 -333 648 233 79 26 chr4 19562293 19562482 -182765865 + MLT1A1 LTR MaLR 167 365 0 1174 112 62 0 chr4 19562507 19562731 -182765616 + L1MA3 LINE L1 2488 2725 -4840 5535 163 28 17 chr4 19562733 19562923 -182765424 + L1MA3 LINE L1 5811 5997 -1727 1534 126 31 0 chr4 19562923 19563146 -182765201 - MER30 DNA MER1_type 0 230 1 5535 163 28 17 chr4 19563146 19564847 -182763500 + L1MA3 LINE L1 5997 7724 0 6209 200 31 42 chr4 19564868 19566588 -182761759 + L1M4c LINE L1 922 2622 -3760 944 260 34 44 chr4 19566647 19567058 -182761289 + L1MC4 LINE L1 7636 8042 0 570 124 0 0 chr4 19567294 19567383 -182760964 + (TATTG)n Simple_repeat Simple_repeat 2 90 0 234 311 0 0 chr4 19567411 19567472 -182760875 + MER112 DNA MER1_type 191 251 -9 544 307 26 16 chr4 19567993 19568182 -182760165 - MIR SINE MIR -25 237 47 691 205 30 18 chr4 19568236 19568402 -182759945 + MLT1C LTR MaLR 300 467 0 245 277 84 24 chr4 19569089 19569172 -182759175 - Charlie8 DNA MER1_type -2305 112 25 997 171 80 59 chr4 19569796 19570082 -182758265 + MER33 DNA MER1_type 27 318 -6 185 287 89 69 chr4 19571494 19571595 -182756752 + MIR SINE MIR 9 111 -151 744 254 100 0 chr4 19571879 19572099 -182756248 + MIR SINE MIR 8 249 -13 21 0 0 0 chr4 19572873 19572894 -182755453 + AT_rich Low_complexity Low_complexity 1 21 0 262 283 33 0 chr4 19574955 19575047 -182753300 + (TA)n Simple_repeat Simple_repeat 2 96 0 626 111 0 0 chr4 19575321 19575402 -182752945 - AluY SINE Alu -216 95 15 2539 61 0 0 chr4 19575782 19576092 -182752255 + AluY SINE Alu 2 311 0 249 242 16 0 chr4 19576681 19576743 -182751604 + (CATA)n Simple_repeat Simple_repeat 2 64 0 1517 135 25 41 chr4 19576844 19577225 -182751122 + L1M2 LINE L1 5180 5546 -743 464 318 41 82 chr4 19577320 19577685 -182750662 + L2 LINE L2 2923 3272 0 234 0 0 0 chr4 19578030 19578056 -182750291 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2116 107 40 7 chr4 19578348 19578648 -182749699 + AluSg SINE Alu 1 310 0 183 244 233 0 chr4 19579215 19579301 -182749046 + L2 LINE L2 3192 3297 -16 1509 199 44 39 chr4 19580038 19580377 -182747970 + MLT1B LTR MaLR 27 370 -20 1862 175 55 40 chr4 19580377 19580799 -182747548 + MSTC LTR MaLR 1 428 0 1509 199 44 39 chr4 19580799 19580821 -182747526 + MLT1B LTR MaLR 370 390 0 21 36 0 0 chr4 19581948 19581976 -182746371 + AT_rich Low_complexity Low_complexity 1 28 0 209 328 0 0 chr4 19582278 19582345 -182746002 + GA-rich Low_complexity Low_complexity 2 68 0 6241 182 16 27 chr4 19582968 19584334 -182744013 - L1P3 LINE L1 -4056 2405 1012 625 267 24 6 chr4 19584327 19584492 -182743855 + L1P3 LINE L1 564 731 -5730 * 201 355 0 40 chr4 19684885 19684961 -182643386 - MIR SINE MIR -170 92 20 4576 179 11 6 chr4 19685004 19686304 -182642043 - L1PA16 LINE L1 -152 6014 4710 6494 204 11 12 chr4 19686304 19687744 -182640603 + L1PA16 LINE L1 3266 4703 -1443 239 315 0 33 chr4 19688098 19688190 -182640157 - MLT1K LTR MaLR -56 532 444 414 299 40 40 chr4 19688259 19688433 -182639914 - MLT1K LTR MaLR -158 430 257 625 265 20 60 chr4 19688442 19688642 -182639705 + MER82 DNA MER2_type 1 192 -461 193 151 12 47 chr4 19688673 19688759 -182639588 + (TA)n Simple_repeat Simple_repeat 2 84 0 1830 204 46 59 chr4 19688776 19689237 -182639110 + MER82 DNA MER2_type 199 653 0 278 340 19 39 chr4 19689248 19689404 -182638943 - MLT1K LTR MaLR -409 179 27 2022 105 26 36 chr4 19690660 19690964 -182637383 - AluY SINE Alu -10 301 1 224 349 47 9 chr4 19691042 19691148 -182637199 + L2 LINE L2 1903 2012 -1302 244 316 20 31 chr4 19691185 19691283 -182637064 - L2 LINE L2 -18 3295 3199 310 303 73 9 chr4 19691773 19691882 -182636465 + L2 LINE L2 3156 3271 -1 213 309 0 0 chr4 19691966 19692021 -182636326 - MER5A DNA MER1_type 0 189 135 216 0 0 0 chr4 19692241 19692265 -182636082 + (TC)n Simple_repeat Simple_repeat 1 24 0 1976 80 4 36 chr4 19693063 19693338 -182635009 + AluSp SINE Alu 1 266 -47 30 27 0 0 chr4 19693682 19693719 -182634628 + AT_rich Low_complexity Low_complexity 1 37 0 1419 252 75 23 chr4 19695352 19695793 -182632554 - MLT1D LTR MaLR -4 501 38 420 143 0 14 chr4 19695811 19695881 -182632466 - MLT1D LTR MaLR -423 82 14 271 298 0 0 chr4 19696924 19697008 -182631339 + (TTCA)n Simple_repeat Simple_repeat 1 84 0 484 307 166 0 chr4 19698500 19698705 -182629642 - MIR SINE MIR -12 250 12 1879 255 10 2 chr4 19699276 19699770 -182628577 - L1M4 LINE L1 -1082 5064 4567 1955 140 10 0 chr4 19700081 19700374 -182627973 - AluSx SINE Alu -16 296 1 270 0 0 0 chr4 19700396 19700426 -182627921 + (TTA)n Simple_repeat Simple_repeat 2 31 0 198 365 27 0 chr4 19700627 19700701 -182627646 + L2 LINE L2 3227 3302 -11 213 65 0 0 chr4 19702033 19702064 -182626283 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 374 300 81 19 chr4 19702600 19702760 -182625587 + MIR SINE MIR 59 228 -34 2210 139 28 0 chr4 19703179 19703532 -182624815 - THE1B LTR MaLR -1 363 1 294 362 34 34 chr4 19704457 19704664 -182623683 + MIR3 SINE MIR 1 207 -1 627 286 132 0 chr4 19704930 19705143 -182623204 - MIR SINE MIR -13 249 9 28 29 0 0 chr4 19705186 19705221 -182623126 + AT_rich Low_complexity Low_complexity 1 35 0 367 287 30 10 chr4 19705231 19705332 -182623015 + MIR SINE MIR 49 151 -111 197 197 49 115 chr4 19705398 19705520 -182622827 - L2 LINE L2 -64 3249 3136 237 309 173 31 chr4 19705565 19705756 -182622591 - MLT1G LTR MaLR -94 496 279 276 322 95 19 chr4 19705826 19706101 -182622246 - L2 LINE L2 -252 3061 2714 876 124 0 0 chr4 19706561 19706698 -182621649 + (TTTC)n Simple_repeat Simple_repeat 1 137 0 569 113 0 10 chr4 19706698 19706795 -182621552 + (TTCC)n Simple_repeat Simple_repeat 3 98 0 417 333 116 44 chr4 19708044 19708708 -182619639 - L2 LINE L2 -864 2450 1739 381 93 0 0 chr4 19709682 19709736 -182618611 + (GA)n Simple_repeat Simple_repeat 1 54 0 2288 125 23 3 chr4 19709901 19710245 -182618102 + THE1B LTR MaLR 14 364 0 3342 72 26 78 chr4 19710245 19710784 -182617563 + THE1B-int LTR MaLR 1 511 -1069 2173 162 44 32 chr4 19710817 19711363 -182616984 + MLT2A2 LTR ERVL 1 554 0 22 56 0 0 chr4 19712131 19712167 -182616180 + AT_rich Low_complexity Low_complexity 1 36 0 1410 291 74 13 chr4 19712721 19713181 -182615166 + Zaphod DNA AcHobo 21 508 -3523 45 55 0 0 chr4 19713320 19713393 -182614954 + AT_rich Low_complexity Low_complexity 1 73 0 1730 143 137 16 chr4 19713617 19713938 -182614409 - THE1B LTR MaLR -4 360 1 418 192 75 25 chr4 19713959 19714079 -182614268 + Zaphod DNA AcHobo 3737 3862 -169 7472 188 20 36 chr4 19714100 19715940 -182612407 + L1PB4 LINE L1 3462 5253 -903 216 0 0 0 chr4 19715940 19715964 -182612383 + (CAA)n Simple_repeat Simple_repeat 1 24 0 7472 188 20 36 chr4 19715964 19716852 -182611495 + L1PB4 LINE L1 5253 6154 -2 294 170 10 140 chr4 19716867 19716895 -182611452 + MER115 DNA AcHobo 607 637 -56 2849 0 0 3 chr4 19716895 19717204 -182611143 - AluYa5 SINE Alu -3 308 1 294 170 10 140 chr4 19717204 19717275 -182611072 + MER115 DNA AcHobo 637 693 0 347 357 42 65 chr4 19717333 19717686 -182610661 - L2 LINE L2 -40 3232 2888 873 127 0 33 chr4 19717816 19717969 -182610378 + AluJb SINE Alu 1 138 -174 14192 33 0 0 chr4 19717969 19719679 -182608668 + L1P LINE L1 3649 5358 -788 1590 220 65 44 chr4 19720519 19721014 -182607333 - MLT1D LTR MaLR 0 505 1 540 187 53 64 chr4 19721032 19721219 -182607128 - MER53 DNA DNA -1 188 4 2342 80 3 19 chr4 19721500 19721812 -182606535 - AluSg SINE Alu 0 310 4 842 126 0 0 chr4 19721814 19721949 -182606398 - L1 LINE L1 -1493 4653 4519 180 176 0 0 chr4 19722788 19722822 -182605525 + A-rich Low_complexity Low_complexity 1 34 0 183 80 0 0 chr4 19723542 19723567 -182604780 + (CA)n Simple_repeat Simple_repeat 2 26 0 228 200 20 0 chr4 19723574 19723624 -182604723 + (TA)n Simple_repeat Simple_repeat 2 52 0 1958 247 84 38 chr4 19723630 19724959 -182603388 - L1ME2 LINE L1 -10 6414 5028 1570 259 36 54 chr4 19724980 19725347 -182603000 - L1ME2 LINE L1 -4987 1422 1073 1162 258 24 40 chr4 19725347 19725727 -182602620 - MLT1A2 LTR MaLR 0 374 1 1570 259 36 54 chr4 19725727 19726080 -182602267 - L1ME2 LINE L1 -5336 1073 715 308 258 70 16 chr4 19726514 19726809 -182601538 - L1ME LINE L1 -4973 1399 1031 2427 73 0 19 chr4 19727200 19727517 -182600830 - AluY SINE Alu 0 311 1 215 360 100 34 chr4 19729025 19729264 -182599083 - L3b LINE CR1 -221 1362 1108 285 340 57 21 chr4 19730029 19730203 -182598144 + MIR SINE MIR 9 181 -63 22 0 0 0 chr4 19730890 19730912 -182597435 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 19730927 19730948 -182597399 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 19731100 19731123 -182597224 + AT_rich Low_complexity Low_complexity 1 23 0 242 304 171 32 chr4 19731452 19731610 -182596737 - MIR3 SINE MIR -13 195 16 253 337 63 34 chr4 19731618 19731793 -182596554 - MIR3 SINE MIR -10 198 19 2544 58 0 6 chr4 19732515 19732828 -182595519 - AluY SINE Alu 0 311 1 668 334 33 66 chr4 19733425 19733967 -182594380 + L2 LINE L2 2779 3312 -1 229 246 0 0 chr4 19733968 19733990 -182594357 + (TGAA)n Simple_repeat Simple_repeat 2 23 -35 2016 125 0 14 chr4 19733990 19734285 -182594062 + AluSx SINE Alu 1 291 -21 229 246 0 0 chr4 19734285 19734319 -182594028 + (TGAA)n Simple_repeat Simple_repeat 22 58 0 461 184 26 9 chr4 19735558 19735672 -182592675 + L1MA4 LINE L1 6185 6300 0 1768 166 10 0 chr4 19735753 19736055 -182592292 - AluSp SINE Alu -8 305 1 10506 148 41 64 chr4 19736202 19738407 -182589940 - L1P LINE L1 -3825 2321 167 195 370 43 14 chr4 19738852 19738990 -182589357 + L2 LINE L2 2910 3051 -221 450 320 171 0 chr4 19740237 19740418 -182587929 + L3 LINE CR1 609 820 -757 261 370 46 0 chr4 19740473 19740581 -182587766 + L3 LINE CR1 1011 1123 -454 3347 115 8 14 chr4 19741023 19741537 -182586810 - MER9 LTR ERVK 0 511 1 1463 238 106 64 chr4 19742055 19742897 -182585450 - L1MC5 LINE L1 -435 7526 6650 241 285 106 55 chr4 19743359 19743794 -182584553 - HAL1b LINE L1 -826 522 66 21 0 0 0 chr4 19744155 19744176 -182584171 + AT_rich Low_complexity Low_complexity 1 21 0 236 221 0 47 chr4 19744590 19744676 -182583671 + T-rich Low_complexity Low_complexity 2 83 0 793 274 56 94 chr4 19745670 19746173 -182582174 - MER102b DNA MER1_type -43 298 29 498 227 46 8 chr4 19746444 19746589 -182581758 + MLT1C LTR MaLR 1 150 -355 786 246 94 39 chr4 19747094 19747403 -182580944 + MLT1C LTR MaLR 138 463 -4 265 374 174 0 chr4 19747951 19748066 -182580281 + L2 LINE L2 3134 3268 -4 2084 68 5 2 chr4 19748879 19749443 -182578904 + L1PA7 LINE L1 5479 6147 -7 2241 105 3 0 chr4 19749630 19749926 -182578421 + AluY SINE Alu 1 297 -14 219 256 98 24 chr4 19750658 19750740 -182577607 + MIR SINE MIR 21 108 -154 181 69 0 35 chr4 19750811 19750840 -182577507 + L3 LINE CR1 1234 1261 -316 772 165 6 98 chr4 19751118 19751282 -182577065 + MER5A DNA MER1_type 1 149 -40 227 274 0 0 chr4 19751491 19751542 -182576805 - L2 LINE L2 -5 3267 3217 21 0 0 0 chr4 19751603 19751624 -182576723 + AT_rich Low_complexity Low_complexity 1 21 0 1741 225 35 72 chr4 19752811 19753326 -182575021 + MLT2B1 LTR ERVL 17 512 -8 313 240 27 0 chr4 19753330 19753405 -182574942 - MIR SINE MIR -89 173 97 885 220 53 104 chr4 19753410 19753728 -182574619 + MLT1F1 LTR MaLR 3 304 -263 664 208 40 20 chr4 19753699 19753889 -182574458 + MLT1F1 LTR MaLR 432 567 0 * 24 0 0 0 chr4 19754106 19754130 -182574217 + AT_rich Low_complexity Low_complexity 1 24 0 385 92 0 2 chr4 19754139 19754199 -182574148 - Alu SINE Alu -256 52 1 3181 151 0 26 chr4 19754199 19754668 -182573679 - L1PA15 LINE L1 -125 6040 5584 1935 135 0 11 chr4 19754668 19754986 -182573361 + AluSc SINE Alu 1 315 0 3181 151 0 26 chr4 19754986 19755051 -182573296 - L1PA15 LINE L1 -581 5584 5519 1095 197 9 0 chr4 19755049 19755272 -182573075 + L1P LINE L1 4842 5066 -1080 * 292 236 29 132 chr4 19755575 19755749 -182572598 + L2 LINE L2 2891 3046 -226 287 308 172 40 chr4 19755800 19756027 -182572320 + MIR SINE MIR 6 262 0 21 57 0 0 chr4 19756285 19756320 -182572027 + AT_rich Low_complexity Low_complexity 1 35 0 7257 93 4 3 chr4 19756320 19758146 -182570201 - L1PA7 LINE L1 -3 6151 4329 1791 92 8 0 chr4 19758149 19758411 -182569936 - L1PA7 LINE L1 -3573 2573 2310 388 282 0 27 chr4 19758728 19758838 -182569509 + MIR SINE MIR 9 115 -147 1002 212 5 14 chr4 19759645 19759862 -182568485 + MER20 DNA MER1_type 3 217 -2 5522 115 11 23 chr4 19759922 19761007 -182567340 + L1PA13 LINE L1 4555 5631 -532 1642 151 97 31 chr4 19761007 19761359 -182566988 - THE1C LTR MaLR 0 375 1 5522 115 11 23 chr4 19761359 19761886 -182566461 + L1PA13 LINE L1 5631 6163 0 459 266 22 0 chr4 19762067 19762206 -182566141 + L1MA8 LINE L1 6140 6281 -10 24 0 0 0 chr4 19762206 19762230 -182566117 + AT_rich Low_complexity Low_complexity 1 24 0 1385 222 30 6 chr4 19763272 19763606 -182564741 - L1MB3 LINE L1 -255 5928 5587 1040 158 24 57 chr4 19763629 19763875 -182564472 - L1MA4A LINE L1 -13 6290 6053 3782 150 36 15 chr4 19763905 19764351 -182563996 - L1MA4A LINE L1 -215 6088 5620 2047 139 48 17 chr4 19764351 19764704 -182563643 - THE1B LTR MaLR 0 364 1 3782 150 36 15 chr4 19764704 19764970 -182563377 - L1MA4A LINE L1 -683 5620 5361 5885 203 35 19 chr4 19765001 19767345 -182561002 - L1PB4 LINE L1 -1 6155 3776 1251 245 69 48 chr4 19767783 19768264 -182560083 + MLT1D LTR MaLR 7 497 -8 484 304 20 14 chr4 19768272 19768420 -182559927 + MIR SINE MIR 107 255 -7 1152 226 30 27 chr4 19768807 19769104 -182559243 + MLT1A1 LTR MaLR 61 358 -7 1927 34 0 0 chr4 19769164 19769397 -182558950 - L1PA3 LINE L1 0 6155 5923 2886 18 0 0 chr4 19769397 19769727 -182558620 + L1PA3 LINE L1 5567 5896 -259 193 250 183 10 chr4 19769727 19769831 -182558516 + MIR SINE MIR 125 246 -16 439 177 0 0 chr4 19769979 19770058 -182558289 + L1PB4 LINE L1 5897 5975 -181 1639 183 174 11 chr4 19770066 19770427 -182557920 + MSTA LTR MaLR 9 428 0 565 228 28 56 chr4 19770432 19770612 -182557735 + L1PB4 LINE L1 5980 6154 -2 213 339 83 28 chr4 19772515 19772695 -182555652 + MIR SINE MIR 73 262 0 216 86 0 0 chr4 19773515 19773550 -182554797 + (A)n Simple_repeat Simple_repeat 1 35 0 1884 66 0 0 chr4 19773895 19774122 -182554225 - AluY SINE Alu -84 227 1 623 184 16 0 chr4 19774122 19774247 -182554100 + L1M4 LINE L1 5161 5287 -859 23 33 0 0 chr4 19774266 19774296 -182554051 + AT_rich Low_complexity Low_complexity 1 30 0 694 229 23 0 chr4 19774309 19774440 -182553907 + MER2 DNA MER2_type 1 134 -211 1993 109 25 0 chr4 19774453 19774729 -182553618 - AluSx SINE Alu -26 286 4 3122 241 40 49 chr4 19774732 19776402 -182551945 - L1M4 LINE L1 -2358 4490 2878 28 48 0 0 chr4 19776402 19776444 -182551903 + AT_rich Low_complexity Low_complexity 1 42 0 12816 209 66 11 chr4 19776449 19779179 -182549168 - L1M4 LINE L1 -3971 2878 1 22 35 0 0 chr4 19779659 19779688 -182548659 + AT_rich Low_complexity Low_complexity 1 29 0 1938 141 7 23 chr4 19780302 19780608 -182547739 - AluSq SINE Alu -12 301 1 396 0 0 0 chr4 19781502 19781546 -182546801 + (TA)n Simple_repeat Simple_repeat 1 44 0 9042 32 11 0 chr4 19781550 19783404 -182544943 - L1PA4 LINE L1 -5 6150 4284 2047 205 35 6 chr4 19783404 19783885 -182544462 - L1MC2 LINE L1 -16 6328 5823 26 64 0 0 chr4 19784100 19784147 -182544200 + AT_rich Low_complexity Low_complexity 1 47 0 2106 118 0 10 chr4 19784459 19784763 -182543584 + AluSx SINE Alu 5 305 -7 1583 217 31 14 chr4 19785770 19786129 -182542218 + MLT1A1 LTR MaLR 1 365 0 889 207 107 48 chr4 19786620 19786910 -182541437 + MLT1B LTR MaLR 3 309 -81 186 43 0 0 chr4 19787098 19787121 -182541226 + (TA)n Simple_repeat Simple_repeat 1 23 0 322 328 144 10 chr4 19787664 19787865 -182540482 + MIR SINE MIR 35 262 0 256 358 113 54 chr4 19788066 19788306 -182540041 - L2 LINE L2 -21 3251 2998 234 298 206 21 chr4 19788305 19788446 -182539901 - MIR3 SINE MIR -18 190 24 * 351 78 0 0 chr4 19789098 19789149 -182539198 + (TG)n Simple_repeat Simple_repeat 1 51 0 371 133 60 0 chr4 19790150 19790233 -182538114 - L1MA7 LINE L1 -3 6288 6201 494 89 0 0 chr4 19790271 19790350 -182537997 - Alu SINE Alu 0 310 232 715 213 0 6 chr4 19890351 19890515 -182437832 - L1 LINE L1 -1607 5958 5796 * 1430 270 29 20 chr4 19890508 19891060 -182437287 - L1 LINE L1 -4242 3324 2558 6418 167 20 14 chr4 19891062 19892158 -182436189 + L1P3 LINE L1 8 1110 -5351 947 157 87 0 chr4 19892159 19892331 -182436016 + MSTA LTR MaLR 234 420 -8 1311 184 32 8 chr4 19892334 19892584 -182435763 + L1PA15 LINE L1 5906 6161 -4 9901 226 58 15 chr4 19892586 19894614 -182433733 + L1 LINE L1 2182 4377 -1769 1586 224 0 0 chr4 19894614 19894917 -182433430 + AluJo SINE Alu 1 303 -9 9901 226 58 15 chr4 19894917 19895805 -182432542 + L1 LINE L1 4377 5225 -921 1911 160 21 24 chr4 19895810 19896186 -182432161 + THE1C LTR MaLR 1 375 0 7578 122 13 36 chr4 19896186 19897373 -182430974 + THE1C-int LTR MaLR 1 1159 -421 264 204 0 0 chr4 19897368 19897417 -182430930 + L1MA9 LINE L1 6108 6156 -156 * 662 179 32 6 chr4 19897439 19897595 -182430752 + L1MA9 LINE L1 6146 6305 -7 2029 247 80 33 chr4 19900046 19900138 -182428209 + L1ME1 LINE L1 4790 4876 -1290 2183 143 57 40 chr4 19900138 19900559 -182427788 + MSTA LTR MaLR 1 428 0 2029 247 80 33 chr4 19900559 19901774 -182426573 + L1ME1 LINE L1 4876 6166 0 210 71 0 0 chr4 19901909 19901937 -182426410 + (TC)n Simple_repeat Simple_repeat 1 28 0 185 128 21 0 chr4 19901950 19901997 -182426350 + (TG)n Simple_repeat Simple_repeat 2 49 0 4150 310 105 16 chr4 19902826 19904592 -182423755 - L2 LINE L2 -338 2976 1054 182 213 123 107 chr4 19904859 19904981 -182423366 - MIR3 SINE MIR -72 136 13 494 304 42 37 chr4 19905889 19906080 -182422267 + MIR SINE MIR 6 197 -65 * 497 306 118 51 chr4 19906078 19906646 -182421701 - L2 LINE L2 -4 3309 2686 273 342 69 45 chr4 19906691 19906893 -182421454 + L2 LINE L2 3107 3313 0 268 234 55 94 chr4 19906961 19907162 -182421185 - L2 LINE L2 -878 2436 2244 808 267 61 18 chr4 19907185 19907553 -182420794 - MLT1E LTR MaLR -118 475 1 6345 268 78 28 chr4 19907583 19912054 -182416293 + L1ME3 LINE L1 1853 6549 -7 331 311 69 69 chr4 19912100 19912171 -182416176 + L1MC4a LINE L1 5508 5578 -2230 2326 97 0 0 chr4 19912171 19912479 -182415868 - AluSq SINE Alu -5 308 1 331 311 69 69 chr4 19912479 19912815 -182415532 + L1MC4a LINE L1 5577 5915 -1893 35 24 0 0 chr4 19912918 19912960 -182415387 + AT_rich Low_complexity Low_complexity 1 42 0 258 262 0 0 chr4 19913175 19913236 -182415111 + (TATATG)n Simple_repeat Simple_repeat 1 61 0 22 0 0 0 chr4 19913428 19913450 -182414897 + AT_rich Low_complexity Low_complexity 1 22 0 1228 238 94 25 chr4 19913614 19914060 -182414287 + Charlie4a DNA MER1_type 32 508 0 319 347 81 33 chr4 19915122 19915393 -182412954 + Tigger8 DNA MER2_type 8 291 -375 467 205 16 63 chr4 19915746 19915873 -182412474 + MIR3 SINE MIR 61 181 -27 207 0 0 0 chr4 19917811 19917834 -182410513 + (CA)n Simple_repeat Simple_repeat 1 23 0 229 315 46 9 chr4 19918786 19918894 -182409453 + MER5A DNA MER1_type 2 113 -76 189 237 0 0 chr4 19919035 19919073 -182409274 - L2 LINE L2 -7 3306 3269 970 47 0 31 chr4 19920124 19920253 -182408094 - L1PA8 LINE L1 -3 6169 6045 1924 128 6 64 chr4 19920253 19920611 -182407736 + L1P LINE L1 2010 2346 -3800 510 327 100 5 chr4 19920982 19921202 -182407145 + L2 LINE L2 2992 3232 -40 343 323 87 16 chr4 19921237 19921364 -182406983 + L2 LINE L2 3137 3272 0 818 134 65 126 chr4 19921385 19921616 -182406731 - MER20 DNA MER1_type 0 219 3 26 0 0 0 chr4 19921702 19921728 -182406619 + AT_rich Low_complexity Low_complexity 1 26 0 186 43 0 0 chr4 19922006 19922029 -182406318 + (CA)n Simple_repeat Simple_repeat 2 24 0 309 280 59 42 chr4 19923089 19923207 -182405140 + MIR3 SINE MIR 69 188 -20 187 342 92 0 chr4 19923482 19923558 -182404789 + MIR SINE MIR 66 148 -114 550 45 0 91 chr4 19923891 19923979 -182404368 + MADE1 DNA Mariner 1 80 0 1480 208 63 22 chr4 19923995 19924360 -182403987 - MLT1B LTR MaLR -10 380 1 216 250 34 68 chr4 19924617 19924705 -182403642 + MIR SINE MIR 81 165 -97 1912 177 43 30 chr4 19924880 19925423 -182402924 + MLT2A2 LTR ERVL 1 554 0 193 357 56 7 chr4 19925724 19925867 -182402480 + L2 LINE L2 3159 3308 -5 312 381 26 5 chr4 19926184 19926373 -182401974 + L2 LINE L2 2868 3060 -212 462 164 0 0 chr4 19926414 19926487 -182401860 - AluJ/FRAM SINE Alu -21 291 219 317 349 62 8 chr4 19926564 19926693 -182401654 + L2 LINE L2 3134 3269 -3 22 0 0 0 chr4 19926922 19926944 -182401403 + AT_rich Low_complexity Low_complexity 1 22 0 294 210 48 0 chr4 19927715 19927777 -182400570 - MIR SINE MIR -70 192 128 251 319 198 19 chr4 19929925 19930132 -182398215 - MIR SINE MIR 0 262 19 2334 96 0 3 chr4 19930730 19931042 -182397305 - AluY SINE Alu 0 311 1 5063 132 28 7 chr4 19931045 19931896 -182396451 - L1PA16 LINE L1 0 6166 5298 549 261 6 0 chr4 19931991 19932148 -182396199 - L1M4 LINE L1 -2136 4010 3853 461 302 132 101 chr4 19932156 19932649 -182395698 + L2 LINE L2 2804 3311 -2 297 0 0 0 chr4 19932885 19932918 -182395429 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 369 0 0 0 chr4 19932917 19932958 -182395389 + (GA)n Simple_repeat Simple_repeat 2 42 0 24 91 0 0 chr4 19933728 19933794 -182394553 + AT_rich Low_complexity Low_complexity 1 66 0 210 349 60 49 chr4 19933799 19933986 -182394361 - MIR SINE MIR -65 143 10 208 280 40 27 chr4 19934717 19934792 -182393555 + MIR SINE MIR 71 146 -62 1781 95 0 0 chr4 19934911 19935142 -182393205 - AluSg/x SINE Alu -5 305 75 189 325 125 25 chr4 19936706 19936866 -182391481 - L2 LINE L2 -703 2611 2436 558 239 0 0 chr4 19937386 19937547 -182390800 - FLAM_A SINE Alu 0 165 5 1022 175 0 0 chr4 19938924 19939084 -182389263 - FRAM SINE Alu -16 160 1 312 374 65 16 chr4 19939152 19939398 -182388949 - L2 LINE L2 -588 2726 2469 525 349 105 19 chr4 19939409 19939733 -182388614 - MLT1J2 LTR MaLR 0 450 99 503 206 10 0 chr4 19939744 19939841 -182388506 - Tigger7 DNA MER2_type -1 2490 2393 * 1126 283 35 0 chr4 19939839 19940097 -182388250 - Tigger7 DNA MER2_type -2220 267 1 796 199 0 0 chr4 19940592 19940738 -182387609 + MER3 DNA MER1_type 24 122 -87 416 322 0 33 chr4 19940807 19940959 -182387388 - MIR SINE MIR 0 262 116 585 278 90 67 chr4 19942194 19942582 -182385765 - MLT1J2 LTR MaLR -49 401 5 1972 147 39 30 chr4 19942863 19943224 -182385123 - THE1B LTR MaLR 0 364 1 1086 219 64 122 chr4 19943575 19943643 -182384704 - MLT1D LTR MaLR -2 503 433 2118 129 0 3 chr4 19943643 19943952 -182384395 + AluSx SINE Alu 1 308 -4 1086 219 64 122 chr4 19943952 19944417 -182383930 - MLT1D LTR MaLR -72 433 1 531 176 182 61 chr4 19945637 19945785 -182382562 - MER5A DNA MER1_type -3 186 21 199 143 0 0 chr4 19945899 19945934 -182382413 - L2 LINE L2 0 3313 3279 188 269 179 0 chr4 19946101 19946168 -182382179 - L2 LINE L2 -8 3305 3227 24 32 0 0 chr4 19946530 19946561 -182381786 + AT_rich Low_complexity Low_complexity 1 31 0 225 203 0 34 chr4 19946573 19946632 -182381715 - L1MB4 LINE L1 -38 6142 6086 * 2910 190 8 0 chr4 19946631 19947158 -182381189 - L1MA4 LINE L1 -282 6018 5488 1361 145 79 11 chr4 19947162 19947521 -182380826 + L1MA4 LINE L1 5101 5483 -743 257 279 0 0 chr4 19947620 19947688 -182380659 + (TG)n Simple_repeat Simple_repeat 1 68 0 1314 212 36 51 chr4 19948596 19948988 -182379359 + MLT1B LTR MaLR 1 386 -4 7804 18 0 0 chr4 19949217 19950160 -182378187 + L1PA3 LINE L1 5213 6155 0 211 242 16 32 chr4 19950984 19951046 -182377301 + L2 LINE L2 3250 3310 -3 255 331 101 14 chr4 19951073 19951212 -182377135 + MIR SINE MIR 57 207 -55 2007 169 14 19 chr4 19951416 19951436 -182376911 + MLT1A1 LTR MaLR 1 20 -345 969 219 135 42 chr4 19951436 19951770 -182376577 + MLT1A1 LTR MaLR 1 365 0 2007 169 14 19 chr4 19951770 19952116 -182376231 + MLT1A1 LTR MaLR 20 365 0 225 262 214 48 chr4 19952369 19952537 -182375810 + L2 LINE L2 2367 2562 -752 4291 161 70 50 chr4 19954033 19955084 -182373263 - MER11C LTR ERVK 0 1071 1 275 191 0 0 chr4 19955819 19955866 -182372481 + MER5A DNA MER1_type 59 105 -84 390 294 175 0 chr4 19956358 19956518 -182371829 + MLT1K LTR MaLR 96 283 -305 258 269 146 31 chr4 19956929 19957081 -182371266 + MER5A DNA MER1_type 2 179 -10 203 0 44 67 chr4 19957270 19957315 -182371032 + (TTTTTG)n Simple_repeat Simple_repeat 3 46 0 542 214 48 37 chr4 19957418 19957605 -182370742 - MER53 DNA DNA 0 189 1 26 64 0 0 chr4 19957942 19957989 -182370358 + AT_rich Low_complexity Low_complexity 1 47 0 2070 136 10 0 chr4 19957992 19958287 -182370060 + AluSx SINE Alu 1 298 -14 715 317 54 8 chr4 19958516 19958756 -182369591 + MIR SINE MIR 12 262 0 209 176 0 0 chr4 19960130 19960164 -182368183 + CT-rich Low_complexity Low_complexity 2 35 0 983 116 27 14 chr4 19961157 19961304 -182367043 + AluSg SINE Alu 3 151 -159 320 303 158 21 chr4 19961524 19961759 -182366588 - L1M4 LINE L1 -753 5393 5124 31 0 0 0 chr4 19961812 19961843 -182366504 + AT_rich Low_complexity Low_complexity 1 31 0 408 315 82 30 chr4 19962125 19962455 -182365892 - L1M4 LINE L1 -1344 4802 4456 24 53 0 0 chr4 19962896 19962934 -182365413 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr4 19963019 19963048 -182365299 + AT_rich Low_complexity Low_complexity 1 29 0 234 336 67 16 chr4 19963302 19963555 -182364792 - L1M4 LINE L1 -2683 3463 3198 1922 264 49 31 chr4 19964073 19964160 -182364187 + MLT1E LTR MaLR 4 88 -505 2732 178 12 0 chr4 19964160 19964650 -182363697 + LOR1a LTR ERV1 2 497 0 1922 264 49 31 chr4 19964650 19965133 -182363214 + MLT1E LTR MaLR 88 584 -9 44 0 0 0 chr4 19965295 19965339 -182363008 + AT_rich Low_complexity Low_complexity 1 44 0 210 167 0 0 chr4 19965341 19965377 -182362970 + (TA)n Simple_repeat Simple_repeat 2 37 0 1654 197 33 9 chr4 19965378 19965708 -182362639 + MER2 DNA MER2_type 1 338 -7 186 281 0 47 chr4 19966032 19966096 -182362251 - L2 LINE L2 -18 3254 3194 1501 88 93 0 chr4 19966144 19966359 -182361988 - LTR12 LTR ERV1 0 714 480 349 248 34 17 chr4 19966360 19966477 -182361870 - LTR30 LTR ERV1 -80 642 524 1588 86 102 45 chr4 19966477 19966721 -182361626 - LTR12 LTR ERV1 -456 258 1 238 335 52 61 chr4 19966955 19967171 -182361176 - MIR SINE MIR -35 227 16 256 373 59 17 chr4 19968203 19968321 -182360026 + L2 LINE L2 3112 3234 -38 208 418 37 0 chr4 19968449 19968583 -182359764 - L2 LINE L2 -777 2537 2399 271 366 58 12 chr4 19968697 19968869 -182359478 + L2 LINE L2 2935 3114 -158 3500 157 72 19 chr4 19970881 19971610 -182356737 + LTR1B LTR ERV1 1 785 0 764 232 27 58 chr4 19971622 19971846 -182356501 - MIR SINE MIR -10 252 36 1322 239 42 24 chr4 19972017 19972397 -182355950 - MLT1B LTR MaLR -3 387 1 653 309 98 24 chr4 19972439 19972776 -182355571 - MLT1I LTR MaLR -2 407 46 28 29 0 0 chr4 19973844 19973879 -182354468 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr4 19973908 19973945 -182354402 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr4 19973967 19973995 -182354352 + AT_rich Low_complexity Low_complexity 1 28 0 297 251 97 50 chr4 19974037 19974316 -182354031 + L1M4 LINE L1 4330 4621 -1525 22 35 0 0 chr4 19974339 19974368 -182353979 + AT_rich Low_complexity Low_complexity 1 29 0 1135 263 86 21 chr4 19974442 19974826 -182353521 - MLT1I LTR MaLR 0 409 1 308 303 0 74 chr4 19974975 19975097 -182353250 - L2 LINE L2 -2 3311 3199 1929 199 48 30 chr4 19975289 19975799 -182352548 + MER39 LTR ERV1 4 707 0 1786 154 8 63 chr4 19976091 19976454 -182351893 + MER61A LTR ERV1 1 343 0 1774 188 16 21 chr4 19976597 19976974 -182351373 - L1MC1 LINE L1 -17 6316 5942 1594 144 8 0 chr4 19976974 19977237 -182351110 - MER34C LTR ERV1 -293 292 28 429 291 0 0 chr4 19977252 19977393 -182350954 - L1M4 LINE L1 -1303 4843 4703 1492 239 42 26 chr4 19977401 19977778 -182350569 + MSTD LTR MaLR 14 396 0 5622 259 52 32 chr4 19977780 19979480 -182348867 + MSTD-int LTR MaLR 2 1735 0 1224 227 55 47 chr4 19979480 19979841 -182348506 + MSTD LTR MaLR 1 364 -32 2446 121 22 0 chr4 19979841 19980197 -182348150 - THE1B LTR MaLR 0 364 1 10116 123 4 46 chr4 19980201 19981830 -182346517 - THE1B-int LTR MaLR -6 1574 14 2149 154 23 0 chr4 19981832 19982183 -182346164 - THE1B LTR MaLR -3 361 3 3293 170 107 32 chr4 19982581 19982982 -182345365 + MER72 LTR ERV1 8 480 -242 2416 82 0 0 chr4 19982982 19983286 -182345061 - AluY SINE Alu -7 304 1 3293 170 107 32 chr4 19983286 19983549 -182344798 + MER72 LTR ERV1 480 722 0 246 288 0 0 chr4 19983635 19983708 -182344639 + MIR SINE MIR 134 206 -56 221 159 0 0 chr4 19983733 19983777 -182344570 + T-rich Low_complexity Low_complexity 2 45 0 28 71 0 0 chr4 19983777 19983833 -182344514 + AT_rich Low_complexity Low_complexity 1 56 0 22 35 0 0 chr4 19983895 19983924 -182344423 + AT_rich Low_complexity Low_complexity 1 29 0 1898 127 3 59 chr4 19983933 19984257 -182344090 - AluSc SINE Alu -3 306 1 547 248 34 20 chr4 19984457 19984606 -182343741 + MER58B DNA MER1_type 188 338 -3 25 0 0 0 chr4 19985022 19985047 -182343300 + AT_rich Low_complexity Low_complexity 1 25 0 5228 155 31 34 chr4 19985551 19986626 -182341721 - MER11C LTR ERVK 0 1071 1 397 339 75 55 chr4 19986903 19987319 -182341028 - L2 LINE L2 -64 3249 2826 223 325 43 43 chr4 19987367 19987484 -182340863 - L2 LINE L2 -679 2635 2519 21 0 0 0 chr4 19987538 19987559 -182340788 + AT_rich Low_complexity Low_complexity 1 21 0 280 336 46 23 chr4 19988044 19988175 -182340172 - MIR SINE MIR -30 232 99 2344 83 20 0 chr4 19989319 19989620 -182338727 - AluY SINE Alu -4 307 1 259 318 23 11 chr4 19990306 19990394 -182337953 + L2 LINE L2 3184 3272 0 801 231 17 132 chr4 19990553 19990908 -182337439 + MLT1A1 LTR MaLR 52 365 0 6282 18 0 0 chr4 19991682 19992399 -182335948 + L1PA3 LINE L1 5439 6155 0 400 273 73 13 chr4 19992486 19992636 -182335711 - MIR SINE MIR -68 194 36 1333 186 126 60 chr4 19992703 19993085 -182335262 - LTR8A LTR ERV1 0 727 321 676 98 0 0 chr4 19993081 19993173 -182335174 - LTR8A LTR ERV1 -635 92 1 * 242 304 118 10 chr4 19993175 19993277 -182335070 + MIR SINE MIR 44 156 -106 3990 116 21 68 chr4 19993319 19994035 -182334312 - LTR8 LTR ERV1 -9 682 1 270 247 26 0 chr4 19994857 19994934 -182333413 + MIR SINE MIR 140 218 -44 221 227 45 15 chr4 19995022 19995088 -182333259 - MIR SINE MIR -75 187 120 192 152 0 0 chr4 19995210 19995243 -182333104 + T-rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4 19995317 19995345 -182333002 + AT_rich Low_complexity Low_complexity 1 28 0 311 253 11 11 chr4 19995451 19995546 -182332801 + (TAA)n Simple_repeat Simple_repeat 1 95 0 672 296 69 0 chr4 19995554 19995770 -182332577 - MIR SINE MIR -12 250 20 26 64 0 0 chr4 19996477 19996524 -182331823 + AT_rich Low_complexity Low_complexity 1 47 0 455 87 14 0 chr4 19997820 19997889 -182330458 + (TG)n Simple_repeat Simple_repeat 1 70 0 198 283 0 0 chr4 19998335 19998381 -182329966 + L2 LINE L2 3227 3272 0 1937 57 0 0 chr4 19998709 19998956 -182329391 - L1PA5 LINE L1 -4 6150 5904 1678 131 4 4 chr4 19999333 19999592 -182328755 + AluSg SINE Alu 49 307 -3 860 223 51 102 chr4 19999629 19999961 -182328386 - L1MA10 LINE L1 -2 6332 6018 2250 97 49 5 chr4 19999981 20000358 -182327989 + LTR7 LTR ERV1 1 450 0 2159 101 3 0 chr4 20000358 20000665 -182327682 + HERVH LTR ERV1 1 308 -7405 218 294 43 43 chr4 20000723 20000815 -182327532 + MIR SINE MIR 122 213 -49 1079 197 34 5 chr4 20001092 20001300 -182327047 - MER20 DNA MER1_type -5 214 1 530 259 90 90 chr4 20001334 20001589 -182326758 - MIR SINE MIR -5 257 3 27 29 0 0 chr4 20001683 20001717 -182326630 + AT_rich Low_complexity Low_complexity 1 34 0 301 298 65 24 chr4 20001916 20002040 -182326307 - MIR SINE MIR -119 143 15 22 35 0 0 chr4 20002564 20002593 -182325754 + AT_rich Low_complexity Low_complexity 1 29 0 374 242 33 64 chr4 20002878 20003040 -182325307 + MIR SINE MIR 54 212 -50 351 0 0 0 chr4 20004269 20004308 -182324039 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 2000 217 98 38 chr4 20004896 20005722 -182322625 - L1MD3 LINE L1 0 7990 6902 203 255 157 0 chr4 20005872 20005923 -182322424 + L2 LINE L2 3200 3258 -55 284 325 50 0 chr4 20005959 20006039 -182322308 + L2 LINE L2 3217 3300 -13 224 289 0 0 chr4 20006519 20006571 -182321776 - L2 LINE L2 -2 3270 3219 249 339 62 9 chr4 20007156 20007268 -182321079 + MIR SINE MIR 89 206 -56 1840 153 3 34 chr4 20007283 20007609 -182320738 + Tigger1 DNA MER2_type 1 316 -2102 1907 123 4 0 chr4 20007609 20007877 -182320470 + AluSc SINE Alu 1 269 -40 506 287 11 80 chr4 20009318 20009506 -182318841 - MER5A DNA MER1_type -6 183 9 277 322 67 61 chr4 20009496 20009676 -182318671 - MIR SINE MIR -69 193 13 * 672 208 198 43 chr4 20010907 20011114 -182317233 + MIR SINE MIR 24 262 0 1018 118 44 44 chr4 20011464 20011537 -182316810 + L1PA16 LINE L1 5963 6035 -131 1292 150 87 113 chr4 20011537 20011997 -182316350 - LTR7 LTR ERV1 -2 448 1 1018 118 44 44 chr4 20011997 20012127 -182316220 + L1PA16 LINE L1 6034 6166 0 24 67 0 0 chr4 20014124 20014169 -182314178 + AT_rich Low_complexity Low_complexity 1 45 0 269 297 85 8 chr4 20014215 20014333 -182314014 - L2 LINE L2 0 3272 3146 284 294 71 0 chr4 20014608 20014693 -182313654 + MIR SINE MIR 90 180 -82 411 217 57 74 chr4 20015004 20015179 -182313168 + Charlie7 DNA MER1_type 2440 2611 -1 1693 149 64 10 chr4 20015320 20015615 -182312732 - AluSx SINE Alu -1 311 1 715 303 149 20 chr4 20015757 20016199 -182312148 + LTR33 LTR ERVL 16 514 -7 566 189 14 81 chr4 20016315 20016463 -182311884 - MLT2A2 LTR ERVL -47 406 269 470 238 191 0 chr4 20016862 20017009 -182311338 - MIR SINE MIR 0 262 88 209 210 16 0 chr4 20018939 20019001 -182309346 + (TAG)n Simple_repeat Simple_repeat 1 63 0 542 315 33 6 chr4 20019043 20019224 -182309123 - MIR SINE MIR -64 198 13 1083 237 63 47 chr4 20019944 20020307 -182308040 + MLT1B LTR MaLR 22 390 0 186 43 0 0 chr4 20020416 20020439 -182307908 + (T)n Simple_repeat Simple_repeat 1 23 0 1476 198 33 63 chr4 20020764 20021163 -182307184 + MLT1B LTR MaLR 3 389 -1 477 311 107 6 chr4 20021313 20021490 -182306857 - MIR3 SINE MIR -6 202 8 216 67 0 0 chr4 20021889 20021919 -182306428 + (CCA)n Simple_repeat Simple_repeat 3 32 0 185 365 0 0 chr4 20022974 20023059 -182305288 + MIR SINE MIR 137 221 -41 797 213 19 53 chr4 20023462 20023669 -182304678 - MLT2B1 LTR ERVL -320 200 1 27 0 0 0 chr4 20023876 20023903 -182304444 + AT_rich Low_complexity Low_complexity 1 27 0 1767 157 3 11 chr4 20023967 20024281 -182304066 + AluSx SINE Alu 1 312 0 196 298 60 0 chr4 20024482 20024566 -182303781 + MIR SINE MIR 101 189 -73 1810 235 85 66 chr4 20024901 20025549 -182302798 + MLT2F LTR ERVL 1 660 -3 1962 152 0 0 chr4 20025649 20025938 -182302409 - AluSx SINE Alu -13 299 11 2876 118 9 5 chr4 20026351 20026782 -182301565 + MER57B LTR ERV1 1 433 -1 29 0 0 0 chr4 20026859 20026888 -182301459 + AT_rich Low_complexity Low_complexity 1 29 0 687 303 56 25 chr4 20027600 20027923 -182300424 + L2 LINE L2 2298 2630 -684 298 294 104 50 chr4 20027937 20028138 -182300209 + L2 LINE L2 3085 3296 -17 42 20 0 0 chr4 20028169 20028218 -182300129 + AT_rich Low_complexity Low_complexity 1 49 0 2359 62 10 23 chr4 20028314 20028618 -182299729 + AluY SINE Alu 1 300 -11 636 311 48 12 chr4 20028738 20028986 -182299361 + LTR16C LTR ERVL 144 400 -91 1804 75 0 16 chr4 20029260 20029512 -182298835 - L1PA13 LINE L1 0 6163 5916 403 247 40 20 chr4 20029827 20029977 -182298370 + MER103 DNA DNA 4 156 -10 1323 98 0 0 chr4 20030313 20030532 -182297815 + AluY SINE Alu 127 311 0 181 293 91 40 chr4 20031380 20031479 -182296868 - L2 LINE L2 -4 3309 3206 734 191 30 0 chr4 20031749 20031880 -182296467 - AluJo SINE Alu -177 135 1 21 71 0 0 chr4 20031935 20031977 -182296370 + AT_rich Low_complexity Low_complexity 1 42 0 399 21 0 0 chr4 20032467 20032515 -182295832 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 36 40 0 0 chr4 20033624 20033674 -182294673 + AT_rich Low_complexity Low_complexity 1 50 0 367 361 18 12 chr4 20034178 20034344 -182294003 - MIR SINE MIR -94 168 2 180 0 0 0 chr4 20034569 20034589 -182293758 + (CAA)n Simple_repeat Simple_repeat 2 21 0 198 103 0 0 chr4 20035323 20035352 -182292995 + (GAA)n Simple_repeat Simple_repeat 2 30 0 194 326 0 0 chr4 20035948 20035997 -182292350 + L2 LINE L2 3210 3258 -14 * 322 335 108 7 chr4 20035981 20036196 -182292151 + MIR SINE MIR 17 245 -17 305 211 37 37 chr4 20036380 20036541 -182291806 + (TA)n Simple_repeat Simple_repeat 2 162 0 1805 189 35 9 chr4 20037198 20037536 -182290811 + MLT1A1 LTR MaLR 19 365 0 788 47 0 0 chr4 20037724 20037874 -182290473 + L1PA4 LINE L1 6036 6166 0 220 389 62 35 chr4 20038855 20039112 -182289235 + L2 LINE L2 2804 3067 -205 928 43 0 0 chr4 20040953 20041070 -182287277 - L1PA4 LINE L1 -3 6152 6036 310 50 0 0 chr4 20041076 20041116 -182287231 + tRNA-Pro-CCT tRNA tRNA 1 40 -35 2046 171 0 3 chr4 20041301 20041658 -182286689 - MER46B DNA MER2_type -1 235 5 273 272 19 29 chr4 20042060 20042163 -182286184 + GA-rich Low_complexity Low_complexity 2 103 0 206 313 151 11 chr4 20042437 20042616 -182285731 + MIR SINE MIR 32 235 -27 335 212 92 115 chr4 20043204 20043421 -182284926 - MIR SINE MIR -4 258 47 30983 114 11 56 chr4 20043443 20047362 -182280985 + L1PA7 LINE L1 3 3515 -2639 2188 188 11 30 chr4 20047362 20047829 -182280518 - LTR22A LTR ERVK 0 458 1 30983 114 11 56 chr4 20047829 20050347 -182278000 + L1PA7 LINE L1 3515 6143 -11 278 247 19 43 chr4 20050357 20050496 -182277851 - L1MD2 LINE L1 -17 6149 6016 661 221 0 51 chr4 20050551 20050734 -182277613 - L1MD2 LINE L1 -274 5880 5726 735 300 40 0 chr4 20050884 20051107 -182277240 + MIR SINE MIR 3 234 -28 21 36 0 0 chr4 20051151 20051179 -182277168 + AT_rich Low_complexity Low_complexity 1 28 0 2062 141 33 25 chr4 20052480 20052841 -182275506 - THE1B LTR MaLR 0 364 1 253 306 50 58 chr4 20052841 20053083 -182275264 + L2 LINE L2 2380 2619 -695 539 250 130 76 chr4 20053093 20053517 -182274830 - MLT1G3 LTR MaLR -26 523 75 998 314 63 10 chr4 20053568 20054017 -182274330 + L2 LINE L2 2617 3084 -229 699 164 16 0 chr4 20054058 20054180 -182274167 - AluSg/x SINE Alu -6 304 181 275 329 0 0 chr4 20054644 20054729 -182273618 + Charlie1 DNA MER1_type 42 126 -2635 190 336 196 7 chr4 20055750 20055893 -182272454 + MIR3 SINE MIR 33 202 -6 2133 113 0 3 chr4 20056301 20056585 -182271762 + AluSx SINE Alu 1 283 -29 21 0 0 0 chr4 20056594 20056615 -182271732 + AT_rich Low_complexity Low_complexity 1 21 0 206 304 14 0 chr4 20058525 20058594 -182269753 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 288 209 20 20 chr4 20058966 20059116 -182269231 + GA-rich Low_complexity Low_complexity 1 150 0 212 0 36 0 chr4 20059847 20059875 -182268472 + (CAA)n Simple_repeat Simple_repeat 2 30 0 360 183 39 33 chr4 20060513 20060666 -182267681 + (TATAA)n Simple_repeat Simple_repeat 5 158 0 236 100 0 20 chr4 20060707 20060757 -182267590 + (TA)n Simple_repeat Simple_repeat 1 49 0 213 225 14 14 chr4 20060758 20060829 -182267518 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 22 70 0 0 chr4 20060836 20060879 -182267468 + AT_rich Low_complexity Low_complexity 1 43 0 213 329 49 12 chr4 20060979 20061061 -182267286 + L2 LINE L2 3187 3271 -1 613 256 19 0 chr4 20061209 20061220 -182267127 - L1MA10 LINE L1 -3 6331 6321 533 265 14 68 chr4 20061220 20061439 -182266908 - L1ME1 LINE L1 -5 6161 5955 414 39 0 0 chr4 20061439 20061491 -182266856 + (T)n Simple_repeat Simple_repeat 1 52 0 43111 30 21 1 chr4 20061493 20067524 -182260823 - L1HS LINE L1 0 6155 3 335 174 116 0 chr4 20067573 20067659 -182260688 - L1ME1 LINE L1 -280 5886 5791 1822 188 29 9 chr4 20068529 20068869 -182259478 + MER7A DNA MER2_type 1 345 -1 412 48 32 0 chr4 20069619 20069682 -182258665 + (CA)n Simple_repeat Simple_repeat 2 66 0 323 338 59 15 chr4 20070990 20071126 -182257221 + MER5A DNA MER1_type 47 188 -1 2471 172 23 79 chr4 20071165 20071771 -182256576 - LTR8 LTR ERV1 -8 683 112 8473 110 8 7 chr4 20071774 20072985 -182255362 + HERVL-B3 LTR ERVL 4442 5654 0 2031 211 50 67 chr4 20072985 20073549 -182254798 + MLT2B3 LTR ERVL 1 554 0 5563 124 11 21 chr4 20073564 20073822 -182254525 + L1PA15 LINE L1 5254 5513 -652 2464 139 61 5 chr4 20073822 20074233 -182254114 + MER61C LTR ERV1 1 434 0 5563 124 11 21 chr4 20074233 20074890 -182253457 + L1PA15 LINE L1 5513 6160 -5 969 189 9 48 chr4 20075237 20075464 -182252883 + MER20 DNA MER1_type 2 219 0 224 154 39 39 chr4 20075614 20075666 -182252681 + L2 LINE L2 2737 2788 -526 656 286 11 0 chr4 20075669 20075854 -182252493 - MER5A DNA MER1_type -2 187 1 21 0 0 0 chr4 20076272 20076293 -182252054 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 20076352 20076380 -182251967 + AT_rich Low_complexity Low_complexity 1 28 0 338 312 43 66 chr4 20076685 20076986 -182251361 - L1ME1 LINE L1 -448 5722 5429 234 0 0 0 chr4 20077001 20077027 -182251320 + (T)n Simple_repeat Simple_repeat 1 26 0 183 100 0 0 chr4 20077110 20077140 -182251207 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 237 206 41 14 chr4 20077186 20077259 -182251088 - L1ME1 LINE L1 -953 5193 5119 242 223 49 0 chr4 20078067 20078151 -182250196 + MIR3 SINE MIR 98 190 -18 242 286 32 0 chr4 20078331 20078394 -182249953 + L2 LINE L2 3241 3305 -8 213 269 26 13 chr4 20078664 20078742 -182249605 + GA-rich Low_complexity Low_complexity 4 82 0 302 252 69 38 chr4 20078742 20078901 -182249446 + MLT1K LTR MaLR 399 562 -26 221 217 17 50 chr4 20079124 20079184 -182249163 + L2 LINE L2 3254 3311 -2 337 121 15 15 chr4 20079410 20079476 -182248871 + GA-rich Low_complexity Low_complexity 3 68 0 451 314 74 54 chr4 20080639 20080881 -182247466 + MIR SINE MIR 2 248 -14 184 343 62 45 chr4 20081294 20081472 -182246875 + L2 LINE L2 2796 2976 -338 364 229 47 106 chr4 20081788 20081958 -182246389 - MLT1H1 LTR MaLR -340 206 43 216 313 209 28 chr4 20082104 20082286 -182246061 + MIR SINE MIR 48 262 0 284 299 81 0 chr4 20082729 20082816 -182245531 - MIR SINE MIR -60 148 55 1846 124 118 24 chr4 20083391 20083722 -182244625 + THE1B LTR MaLR 1 362 -2 246 373 73 0 chr4 20083838 20083948 -182244399 + L2 LINE L2 3155 3272 0 447 309 96 50 chr4 20084519 20084959 -182243388 + MER90 LTR ERV1 78 576 -38 865 146 0 0 chr4 20085164 20085308 -182243039 - L1MA3 LINE L1 -317 5988 5845 1857 114 29 7 chr4 20085308 20085616 -182242731 + L1MA3 LINE L1 5991 6305 0 1276 204 31 28 chr4 20085619 20085942 -182242405 - MLT1A1 LTR MaLR -32 333 10 1395 181 126 6 chr4 20086794 20087120 -182241227 + MLT1A1 LTR MaLR 1 365 0 303 93 0 0 chr4 20087298 20087341 -182241006 + (TC)n Simple_repeat Simple_repeat 2 44 0 402 292 90 7 chr4 20087612 20087756 -182240591 + MIR SINE MIR 97 252 -10 1834 129 7 11 chr4 20088002 20088308 -182240039 + AluSq SINE Alu 34 338 0 232 250 88 0 chr4 20088369 20088449 -182239898 + MLT1K LTR MaLR 371 457 -131 350 274 92 49 chr4 20089405 20089569 -182238778 + MIR SINE MIR 18 188 -74 2209 102 3 3 chr4 20090855 20091150 -182237197 - AluSx SINE Alu -17 295 1 1559 215 31 111 chr4 20091227 20091776 -182236571 + MLT1D LTR MaLR 1 505 0 978 198 62 5 chr4 20091783 20091975 -182236372 - MER58A DNA MER1_type -15 209 7 195 259 111 0 chr4 20092021 20092075 -182236272 + MIR SINE MIR 84 143 -119 251 329 111 33 chr4 20092217 20092460 -182235887 + MLT1J1 LTR MaLR 114 375 -71 199 253 158 21 chr4 20092506 20092601 -182235746 + MIR SINE MIR 151 258 -4 191 273 0 23 chr4 20093286 20093330 -182235017 + L2 LINE L2 3256 3298 -15 384 254 9 9 chr4 20094423 20094533 -182233814 - HAL1 LINE L1 -856 1651 1542 241 214 29 0 chr4 20094535 20094605 -182233742 - Charlie8 DNA MER1_type -1928 489 418 555 250 45 100 chr4 20094946 20095146 -182233201 - MER5A DNA MER1_type 0 189 1 377 314 0 64 chr4 20095146 20095350 -182232997 - HAL1 LINE L1 -333 2174 1984 24 0 0 0 chr4 20095368 20095392 -182232955 + AT_rich Low_complexity Low_complexity 1 24 0 737 280 110 3 chr4 20095462 20095762 -182232585 - HAL1 LINE L1 -708 1799 1468 387 0 0 0 chr4 20095774 20095817 -182232530 + (TG)n Simple_repeat Simple_repeat 2 44 0 255 152 0 0 chr4 20096003 20096049 -182232298 + (TG)n Simple_repeat Simple_repeat 1 46 0 228 254 0 0 chr4 20096760 20096819 -182231528 + (TTA)n Simple_repeat Simple_repeat 3 61 0 181 267 0 22 chr4 20097000 20097045 -182231302 + L3 LINE CR1 605 648 -929 312 198 45 18 chr4 20097359 20097470 -182230877 + (TA)n Simple_repeat Simple_repeat 2 115 0 261 285 66 73 chr4 20098210 20098495 -182229852 - L1ME4a LINE L1 -16 6105 5820 890 205 88 86 chr4 20098495 20098797 -182229550 - MLT1B LTR MaLR -2 388 83 2099 126 0 3 chr4 20098797 20099090 -182229257 + AluSx SINE Alu 1 292 -20 890 205 88 86 chr4 20099090 20099173 -182229174 - MLT1B LTR MaLR -307 83 2 261 285 66 73 chr4 20099173 20099616 -182228731 - L1ME4a LINE L1 -301 5820 5382 212 342 102 21 chr4 20099772 20099959 -182228388 + L2 LINE L2 2857 3058 -214 1601 209 55 10 chr4 20100505 20100903 -182227444 - L1MC3 LINE L1 -7 7778 7363 778 227 135 5 chr4 20100903 20101088 -182227259 - MLT1A1 LTR MaLR 0 365 157 484 232 10 0 chr4 20101088 20101187 -182227160 - L1MC4a LINE L1 -1036 6772 6673 244 309 198 19 chr4 20102642 20102849 -182225498 - MIR SINE MIR 0 262 19 1783 167 0 3 chr4 20103465 20103777 -182224570 - AluY SINE Alu 0 311 1 29 78 0 0 chr4 20203996 20204060 -182124287 + AT_rich Low_complexity Low_complexity 1 64 0 395 281 117 29 chr4 20204123 20204294 -182124053 - MER5A DNA MER1_type -3 186 1 24 67 0 0 chr4 20206173 20206218 -182122129 + AT_rich Low_complexity Low_complexity 1 45 0 22 35 0 0 chr4 20206384 20206413 -182121934 + AT_rich Low_complexity Low_complexity 1 29 0 279 0 0 0 chr4 20206583 20206614 -182121733 + (TG)n Simple_repeat Simple_repeat 2 32 0 276 344 62 23 chr4 20206858 20206986 -182121361 - L2 LINE L2 -2 3311 3179 887 18 18 9 chr4 20207068 20207182 -182121165 - L1PA4 LINE L1 0 6155 6041 23 33 0 0 chr4 20207566 20207596 -182120751 + AT_rich Low_complexity Low_complexity 1 30 0 2280 104 0 3 chr4 20207666 20207973 -182120374 - AluSc SINE Alu -1 308 3 180 0 0 0 chr4 20208735 20208755 -182119592 + (TG)n Simple_repeat Simple_repeat 1 20 0 527 72 0 0 chr4 20208911 20208980 -182119367 + MER41B LTR ERV1 567 635 0 866 197 34 0 chr4 20208999 20209207 -182119140 - L1MA8 LINE L1 -4 6287 6073 1178 147 5 10 chr4 20209214 20209411 -182118936 + L1MA8 LINE L1 5885 6080 -211 1492 124 0 18 chr4 20209659 20209877 -182118470 - AluSx SINE Alu -9 303 90 4927 129 18 7 chr4 20209877 20210647 -182117700 - MER4E LTR ERV1 0 779 1 619 161 0 0 chr4 20210647 20210740 -182117607 - AluSx SINE Alu -220 93 1 213 371 34 0 chr4 20211599 20211688 -182116659 + MIR SINE MIR 86 177 -85 23 0 0 0 chr4 20212352 20212375 -182115972 + AT_rich Low_complexity Low_complexity 1 23 0 569 278 120 29 chr4 20214330 20214539 -182113808 + MIR SINE MIR 32 259 -3 2003 110 3 7 chr4 20215098 20215380 -182112967 + AluY SINE Alu 1 281 -30 251 170 21 0 chr4 20215480 20215527 -182112820 - MER5B DNA MER1_type -124 54 7 597 272 53 6 chr4 20215540 20215709 -182112638 + MER5A DNA MER1_type 2 178 -11 24 53 0 0 chr4 20215943 20215981 -182112366 + AT_rich Low_complexity Low_complexity 1 38 0 315 364 8 8 chr4 20216107 20216225 -182112122 - MIR SINE MIR -129 133 16 1251 199 19 0 chr4 20216790 20217056 -182111291 - L1PA16 LINE L1 -10 6156 5886 306 0 0 0 chr4 20217305 20217339 -182111008 + (CA)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr4 20217380 20217400 -182110947 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 2366 133 66 15 chr4 20217836 20218243 -182110104 - MSTA LTR MaLR 0 428 1 2582 158 25 27 chr4 20218243 20218729 -182109618 - MSTA-int LTR MaLR 0 1651 1167 8530 85 19 0 chr4 20218730 20219456 -182108891 + HERVL-A2 LTR ERVL 4489 5246 -408 212 0 36 0 chr4 20219456 20219484 -182108863 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8530 85 19 0 chr4 20219484 20219900 -182108447 + HERVL-A2 LTR ERVL 5246 5653 -1 2999 90 51 5 chr4 20219901 20220334 -182108013 + MLT2A2 LTR ERVL 1 453 0 610 261 61 87 chr4 20220337 20220648 -182107699 - MLT1C LTR MaLR -164 303 1 2304 95 7 3 chr4 20220968 20221274 -182107073 - AluSx SINE Alu 0 312 6 28 48 0 0 chr4 20221389 20221431 -182106916 + AT_rich Low_complexity Low_complexity 1 42 0 289 263 25 75 chr4 20221507 20221667 -182106680 - MER103 DNA DNA -13 153 2 25 99 0 0 chr4 20221994 20222075 -182106272 + AT_rich Low_complexity Low_complexity 1 81 0 388 136 0 0 chr4 20222178 20222237 -182106110 + THE1B LTR MaLR 306 364 0 4872 217 21 65 chr4 20222237 20222364 -182105983 - L1MC/D LINE L1 -692 5491 5360 635 65 11 0 chr4 20222364 20222456 -182105891 - L1MA1 LINE L1 0 6302 6210 4872 217 21 65 chr4 20222456 20222493 -182105854 - L1MC/D LINE L1 -823 5360 5323 221 0 0 33 chr4 20222493 20222523 -182105824 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 2414 81 3 12 chr4 20222525 20222860 -182105487 - L1PA7 LINE L1 -4 6150 5819 4872 217 21 65 chr4 20222860 20224659 -182103688 - L1MC/D LINE L1 -861 5322 3725 1991 167 108 15 chr4 20224666 20225056 -182103291 - MSTB LTR MaLR 0 426 1 3961 209 116 26 chr4 20225062 20226159 -182102188 - MSTB-int LTR MaLR -7 1644 317 2286 82 4 0 chr4 20226159 20226439 -182101908 - AluSp SINE Alu -32 281 1 3961 209 116 26 chr4 20226439 20226786 -182101561 - MSTB-int LTR MaLR -1334 317 3 1913 183 80 10 chr4 20226786 20227184 -182101163 - MSTB LTR MaLR 0 426 1 641 243 88 20 chr4 20227186 20227437 -182100910 - L1 LINE L1 -2424 3722 3455 974 223 19 28 chr4 20227456 20227775 -182100572 - L1 LINE L1 -2772 3374 3059 1009 294 137 4 chr4 20228168 20228634 -182099713 - L1ME3A LINE L1 -5 6165 5638 269 272 0 22 chr4 20228624 20228716 -182099631 + L1MC4 LINE L1 6614 6703 -1339 * 250 200 0 25 chr4 20228720 20228800 -182099547 + (TA)n Simple_repeat Simple_repeat 2 79 0 23 33 0 0 chr4 20228825 20228855 -182099492 + AT_rich Low_complexity Low_complexity 1 30 0 492 376 32 29 chr4 20228979 20229322 -182099025 - L3 LINE CR1 -6 1571 1228 340 328 55 45 chr4 20229594 20229795 -182098552 - L3 LINE CR1 -477 1100 898 1043 221 84 58 chr4 20231419 20231799 -182096548 + MLT1B LTR MaLR 1 390 0 180 111 0 0 chr4 20231959 20231986 -182096361 + (CTA)n Simple_repeat Simple_repeat 1 27 0 1392 129 0 0 chr4 20231993 20232186 -182096161 - AluSg/x SINE Alu -22 290 98 236 343 0 0 chr4 20232812 20232885 -182095462 - L2 LINE L2 0 3313 3241 273 178 9 84 chr4 20233053 20233160 -182095187 + (CATATA)n Simple_repeat Simple_repeat 4 102 0 1235 237 41 109 chr4 20233205 20233598 -182094749 - MLT2B1 LTR ERVL -48 366 1 230 205 0 60 chr4 20233621 20233704 -182094643 + (CATATA)n Simple_repeat Simple_repeat 4 81 0 4993 167 65 11 chr4 20233704 20234663 -182093684 - ERVL-B1 LTR ERVL -51 5713 4704 879 240 77 28 chr4 20234663 20235007 -182093340 - MSTD LTR MaLR 0 396 6 2442 241 31 22 chr4 20235042 20235586 -182092761 - MSTD-int LTR MaLR 0 1735 1187 662 279 0 0 chr4 20235602 20235763 -182092584 - HERVL-B1 LTR ERVL -5491 163 3 1032 152 0 0 chr4 20235783 20235948 -182092399 - MER65A LTR ERV1 -47 398 234 320 50 0 0 chr4 20235987 20236027 -182092320 + HERVL LTR ERVL 1 40 -5614 233 147 53 27 chr4 20236027 20236102 -182092245 + (TATAA)n Simple_repeat Simple_repeat 3 79 0 1442 241 111 24 chr4 20236106 20236136 -182092211 - MLT2B1 LTR ERVL -31 453 427 276 30 0 0 chr4 20236136 20236169 -182092178 + (CA)n Simple_repeat Simple_repeat 2 34 0 1442 241 111 24 chr4 20236169 20236588 -182091759 - MLT2B1 LTR ERVL -57 427 1 344 222 29 8 chr4 20236629 20236880 -182091467 + (TA)n Simple_repeat Simple_repeat 1 256 0 3037 121 104 105 chr4 20236880 20237632 -182090715 - Tigger3(Golem) DNA MER2_type -2 3027 2277 575 252 17 0 chr4 20237609 20237728 -182090619 - Tigger3(Golem) DNA MER2_type -2907 122 2 * 316 271 8 45 chr4 20237728 20237861 -182090486 + (CATATA)n Simple_repeat Simple_repeat 2 129 0 299 176 0 15 chr4 20237861 20237929 -182090418 + (CA)n Simple_repeat Simple_repeat 2 68 0 848 210 6 0 chr4 20237954 20238116 -182090231 - MLT2B1 LTR ERVL -357 163 1 269 383 27 13 chr4 20238250 20238399 -182089948 + MIR3 SINE MIR 30 180 -28 227 307 44 51 chr4 20238546 20238683 -182089664 - MIR SINE MIR -3 259 124 711 280 105 52 chr4 20238779 20239218 -182089129 + MLT1C LTR MaLR 6 467 0 219 293 0 89 chr4 20239977 20240100 -182088247 + MIR SINE MIR 121 232 -30 436 258 174 24 chr4 20240933 20241100 -182087247 - MIR SINE MIR 0 262 71 1388 248 98 21 chr4 20241399 20241826 -182086521 - MLT1E LTR MaLR -7 586 127 1517 167 12 0 chr4 20242153 20242410 -182085937 - L1MC1 LINE L1 0 6333 6074 1233 127 25 15 chr4 20242511 20242708 -182085639 - THE1B LTR MaLR -152 212 14 2911 182 10 17 chr4 20242712 20243311 -182085036 + L1MB2 LINE L1 5573 6167 -4 1155 251 92 8 chr4 20243518 20244116 -182084231 - MER114 LTR ERV 0 648 1 655 285 77 59 chr4 20244838 20245161 -182083186 - LTR16A LTR ERVL -27 423 95 187 330 90 20 chr4 20246034 20246134 -182082213 + MIR SINE MIR 1 107 -155 5512 184 32 30 chr4 20246452 20247879 -182080468 - L1PA16 LINE L1 -338 5828 4401 221 0 35 0 chr4 20247879 20247908 -182080439 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 5512 184 32 30 chr4 20247908 20248325 -182080022 - L1PA16 LINE L1 -1765 4401 3986 227 281 62 31 chr4 20248404 20248500 -182079847 - MER103 DNA DNA -11 155 57 548 206 63 8 chr4 20248668 20248794 -182079553 - MLT1A1 LTR MaLR -229 136 4 25 51 0 0 chr4 20248810 20248849 -182079498 + AT_rich Low_complexity Low_complexity 1 39 0 187 311 122 14 chr4 20248941 20249015 -182079332 + L2 LINE L2 3179 3260 -12 375 317 120 0 chr4 20249272 20249414 -182078933 + L2 LINE L2 3106 3264 -8 657 238 17 28 chr4 20249984 20250164 -182078183 - MLT1A1 LTR MaLR -54 311 134 1862 211 29 93 chr4 20250164 20250714 -182077633 - MLT2B2 LTR ERVL 0 515 1 691 183 53 8 chr4 20250715 20250846 -182077501 - MLT1A1 LTR MaLR -228 137 1 1781 315 37 60 chr4 20251071 20251962 -182076385 + L1PA16 LINE L1 1 871 -5916 13146 227 30 47 chr4 20251985 20255535 -182072812 + L1PA16 LINE L1 1341 4780 -2037 638 37 0 0 chr4 20255535 20255611 -182072736 + L1PA7 LINE L1 6072 6152 -2 13146 227 30 47 chr4 20255611 20257610 -182070737 + L1PA16 LINE L1 4780 6812 -5 88 46 0 0 chr4 20257628 20257758 -182070589 + AT_rich Low_complexity Low_complexity 1 130 0 1071 214 88 13 chr4 20259419 20259737 -182068610 + MER2 DNA MER2_type 3 344 0 405 0 0 0 chr4 20259753 20259798 -182068549 + (TG)n Simple_repeat Simple_repeat 2 46 0 365 316 18 96 chr4 20260033 20260305 -182068042 + LTR67 LTR ERVL 12 262 -295 27 29 0 0 chr4 20261018 20261052 -182067295 + AT_rich Low_complexity Low_complexity 1 34 0 2639 116 5 13 chr4 20261072 20261083 -182067264 + THE1C LTR MaLR 1 11 -364 4821 82 25 23 chr4 20261083 20261770 -182066577 + LTR12 LTR ERV1 1 688 0 2639 116 5 13 chr4 20261770 20262136 -182066211 + THE1C LTR MaLR 11 375 0 1064 226 5 0 chr4 20262136 20262348 -182065999 - MER58A DNA MER1_type 0 224 12 180 77 0 0 chr4 20262379 20262405 -182065942 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 780 279 40 5 chr4 20262777 20262999 -182065348 + MIR SINE MIR 7 236 -26 1238 288 119 34 chr4 20263143 20263696 -182064651 - MLT1E2 LTR MaLR -5 621 22 5102 237 40 26 chr4 20264011 20264383 -182063964 - L1 LINE L1 -2338 5227 4862 1768 63 9 0 chr4 20264383 20264604 -182063743 - AluSp SINE Alu -2 311 89 5102 237 40 26 chr4 20264604 20264962 -182063385 - L1 LINE L1 -2703 4862 4510 2216 87 3 16 chr4 20264962 20265271 -182063076 - AluSx SINE Alu -7 305 1 5102 237 40 26 chr4 20265271 20266074 -182062273 - L1 LINE L1 -3055 4510 3672 1160 198 17 139 chr4 20266096 20266505 -182061842 - MLT1A1 LTR MaLR -6 359 1 618 239 28 23 chr4 20266505 20266719 -182061628 - L1 LINE L1 -3917 3648 3434 1722 83 31 10 chr4 20266743 20267001 -182061346 - LTR12 LTR ERV1 0 714 349 561 72 0 0 chr4 20266998 20267067 -182061280 - LTR12 LTR ERV1 -593 121 53 * 239 250 0 0 chr4 20267067 20267119 -182061228 - LTR30 LTR ERV1 -670 52 1 503 255 76 11 chr4 20267120 20267380 -182060967 - L1 LINE L1 -4130 3435 3155 644 303 46 20 chr4 20267800 20268114 -182060233 + MLT1I LTR MaLR 64 409 0 385 331 0 8 chr4 20269254 20269375 -182058972 + MIR SINE MIR 15 134 -128 686 220 29 23 chr4 20269645 20269818 -182058529 - MIR SINE MIR 0 262 89 270 253 0 76 chr4 20270057 20270136 -182058211 - L2 LINE L2 -2 3311 3239 182 297 47 70 chr4 20270810 20270938 -182057409 + L2 LINE L2 3186 3310 -3 2790 123 34 0 chr4 20271484 20271892 -182056455 - MER57B LTR ERV1 0 434 13 255 152 38 0 chr4 20272016 20272095 -182056252 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 239 317 19 0 chr4 20272098 20272202 -182056145 - L1MC4 LINE L1 -1324 6718 6613 223 226 0 19 chr4 20272203 20272256 -182056091 + (TA)n Simple_repeat Simple_repeat 1 52 0 325 186 0 0 chr4 20273023 20273082 -182055265 + L1MB5 LINE L1 6108 6166 -8 192 77 0 0 chr4 20273105 20273131 -182055216 + (A)n Simple_repeat Simple_repeat 1 26 0 180 321 62 12 chr4 20273142 20273223 -182055124 - MIR SINE MIR -156 106 22 260 250 125 36 chr4 20273348 20273460 -182054887 - MIR SINE MIR -121 141 20 2109 111 14 0 chr4 20274136 20274433 -182053914 - AluSc SINE Alu -8 301 1 289 307 47 31 chr4 20274471 20274598 -182053749 - MIR SINE MIR -98 164 36 231 322 42 106 chr4 20274796 20275060 -182053287 - L2 LINE L2 -4 3268 3022 234 128 0 0 chr4 20275301 20275340 -182053007 + (TG)n Simple_repeat Simple_repeat 1 39 0 219 342 5 14 chr4 20275370 20275465 -182052882 - MER91 DNA MER1_type -3 187 101 23 0 0 0 chr4 20275761 20275784 -182052563 + AT_rich Low_complexity Low_complexity 1 23 0 406 268 8 49 chr4 20276071 20276194 -182052153 - L2 LINE L2 -4 3309 3192 470 209 8 0 chr4 20276866 20276881 -182051466 + (TA)n Simple_repeat Simple_repeat 2 15 -116 316 138 0 0 chr4 20276881 20276946 -182051401 - L1PB3 LINE L1 -1 6153 6089 470 209 8 0 chr4 20276946 20276988 -182051359 + (TA)n Simple_repeat Simple_repeat 15 55 -76 4576 128 19 26 chr4 20276988 20277779 -182050568 - LTR1 LTR ERV1 0 785 1 219 69 0 0 chr4 20277782 20277811 -182050536 + (TG)n Simple_repeat Simple_repeat 2 30 0 470 209 8 0 chr4 20277811 20277849 -182050498 + (TA)n Simple_repeat Simple_repeat 56 131 0 3721 148 42 2 chr4 20277934 20278549 -182049798 - MER39B LTR ERV1 0 653 14 1034 208 105 68 chr4 20278667 20279095 -182049252 - MER39 LTR ERV1 -3 704 261 561 164 78 8 chr4 20279256 20279384 -182048963 - LTR48 LTR ERV1 -42 745 609 1480 203 121 34 chr4 20279411 20279850 -182048497 - LTR48 LTR ERV1 -310 477 1 548 146 0 24 chr4 20280759 20280882 -182047465 + (GGAA)n Simple_repeat Simple_repeat 1 120 0 486 333 45 5 chr4 20281032 20281233 -182047114 + MIR SINE MIR 47 255 -7 530 264 63 55 chr4 20281348 20281731 -182046616 - Charlie2 DNA MER1_type -249 2613 2228 480 315 113 0 chr4 20281769 20281991 -182046356 - Charlie2 DNA MER1_type -2467 315 69 5725 60 10 7 chr4 20282230 20283370 -182044977 - L1PA7 LINE L1 0 6154 4995 1373 248 15 24 chr4 20283470 20283528 -182044819 - L1M4 LINE L1 -3035 2999 2942 2566 129 44 2 chr4 20283528 20283939 -182044408 + MSTA LTR MaLR 1 428 0 1373 248 15 24 chr4 20283939 20284343 -182044004 - L1M4 LINE L1 -3092 2942 2541 294 212 12 12 chr4 20284348 20284433 -182043914 - L1M4 LINE L1 -4887 1068 984 28 48 0 0 chr4 20284610 20284652 -182043695 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr4 20285282 20285303 -182043044 + AT_rich Low_complexity Low_complexity 1 21 0 531 66 0 0 chr4 20285854 20285930 -182042417 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 2029 124 6 39 chr4 20286813 20287168 -182041179 - L1M3 LINE L1 -416 5752 5410 1768 167 128 34 chr4 20287180 20287397 -182040950 - MSTB1 LTR MaLR -13 419 224 2202 101 7 0 chr4 20287397 20287694 -182040653 - AluSp SINE Alu -13 300 2 1768 167 128 34 chr4 20287694 20287859 -182040488 - MSTB1 LTR MaLR -208 224 1 7437 219 16 25 chr4 20287871 20289522 -182038825 - MSTB1-int LTR MaLR -14 1637 2 1087 170 81 18 chr4 20289525 20289881 -182038466 - MSTB1 LTR MaLR -2 430 1 394 214 0 12 chr4 20289994 20290078 -182038269 - MSTB LTR MaLR -336 90 8 1001 195 9 4 chr4 20290092 20290318 -182038029 - L1M3 LINE L1 -762 5384 5158 1874 196 7 19 chr4 20290320 20290743 -182037604 + L1MB2 LINE L1 5752 6169 -2 185 250 236 57 chr4 20292948 20293160 -182035187 + L2 LINE L2 1795 2044 -1270 214 262 98 0 chr4 20293281 20293342 -182035005 + MIR SINE MIR 186 252 -10 238 344 81 38 chr4 20293647 20293833 -182034514 + L2 LINE L2 2767 2960 -354 234 169 108 72 chr4 20293919 20294002 -182034345 - MIR SINE MIR -117 145 60 1410 128 11 92 chr4 20294291 20294564 -182033783 + MSTC LTR MaLR 1 251 -177 2510 258 57 51 chr4 20294781 20295427 -182032920 - L1ME1 LINE L1 -3 6163 5522 1790 165 131 28 chr4 20295427 20295815 -182032532 + MSTA LTR MaLR 1 428 0 2510 258 57 51 chr4 20295815 20296339 -182032008 - L1ME1 LINE L1 -644 5522 4975 180 0 0 0 chr4 20296339 20296359 -182031988 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2510 258 57 51 chr4 20296359 20296842 -182031505 - L1ME1 LINE L1 -1191 4975 4496 24 32 0 0 chr4 20296912 20296943 -182031404 + AT_rich Low_complexity Low_complexity 1 31 0 319 290 40 0 chr4 20296961 20297072 -182031275 + MLT2A2 LTR ERVL 281 461 -93 4045 199 23 10 chr4 20297172 20298400 -182029947 - L1M2 LINE L1 -694 5597 4348 * 5251 199 24 7 chr4 20298382 20299702 -182028645 - L1PB2 LINE L1 -2 6149 4795 189 0 0 0 chr4 20299702 20299723 -182028624 + (CTATT)n Simple_repeat Simple_repeat 5 25 0 5251 199 24 7 chr4 20299723 20300001 -182028346 - L1PB2 LINE L1 -1356 4795 4523 1444 278 23 23 chr4 20300393 20300832 -182027515 - L1M3b LINE L1 -5829 452 14 * 1507 269 22 22 chr4 20300814 20301398 -182026949 - L1ME1 LINE L1 -1773 4373 3790 202 244 0 0 chr4 20301833 20301878 -182026469 + (TA)n Simple_repeat Simple_repeat 2 46 0 238 378 28 21 chr4 20302194 20302337 -182026010 + L3 LINE CR1 1384 1527 -50 293 325 68 86 chr4 20303988 20304501 -182023846 - L2 LINE L2 -369 2945 2442 249 361 8 34 chr4 20304555 20304674 -182023673 + MER5A DNA MER1_type 9 124 -65 350 311 140 6 chr4 20305725 20305889 -182022458 + MIR SINE MIR 17 202 -60 1102 195 186 30 chr4 20305942 20306312 -182022035 + MSTC LTR MaLR 1 428 0 202 203 0 85 chr4 20306340 20306399 -182021948 + MIR SINE MIR 208 261 -1 2340 113 3 51 chr4 20306573 20306946 -182021401 + THE1A LTR MaLR 1 355 0 411 356 27 11 chr4 20307207 20307395 -182020952 + MIR SINE MIR 2 192 -70 29 47 0 0 chr4 20307924 20307967 -182020380 + AT_rich Low_complexity Low_complexity 1 43 0 211 292 208 21 chr4 20309830 20310022 -182018325 + MIR SINE MIR 3 230 -32 186 374 69 30 chr4 20310766 20310969 -182017378 - MIR SINE MIR -38 224 14 216 200 0 46 chr4 20311066 20311131 -182017216 + (TAA)n Simple_repeat Simple_repeat 1 62 0 231 349 94 0 chr4 20312056 20312162 -182016185 + L2 LINE L2 2934 3049 -264 568 292 0 60 chr4 20312329 20312514 -182015833 - MER58B DNA MER1_type 0 341 168 2173 116 3 0 chr4 20312518 20312812 -182015535 + AluSp SINE Alu 8 302 -11 252 316 13 0 chr4 20312898 20312977 -182015370 + L2 LINE L2 3193 3272 0 245 299 238 19 chr4 20313459 20313673 -182014674 - MIR SINE MIR 0 262 2 323 345 74 7 chr4 20313943 20314091 -182014256 - MIR3 SINE MIR -17 191 34 270 0 0 0 chr4 20314190 20314220 -182014127 + (TG)n Simple_repeat Simple_repeat 2 31 0 680 279 54 20 chr4 20314274 20314478 -182013869 - MIR SINE MIR -32 230 20 1751 114 55 4 chr4 20314977 20315249 -182013098 - L1PA13 LINE L1 -7 6156 5871 811 57 0 0 chr4 20315249 20315354 -182012993 + L1P4 LINE L1 5673 5777 -386 3504 158 45 2 chr4 20315455 20316100 -182012247 - L1MC1 LINE L1 -405 5928 5256 1990 240 55 50 chr4 20316139 20316240 -182012107 - L1MC1 LINE L1 -880 5266 5167 192 40 0 0 chr4 20316240 20316265 -182012082 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1990 240 55 50 chr4 20316265 20316289 -182012058 - L1MC1 LINE L1 -979 5167 5145 1570 133 0 40 chr4 20316289 20316537 -182011810 - AluSx SINE Alu -74 238 1 1990 240 55 50 chr4 20316537 20317192 -182011155 - L1MC1 LINE L1 -1001 5145 4481 2167 114 76 12 chr4 20319801 20320143 -182008204 - THE1B LTR MaLR 0 364 1 272 240 52 31 chr4 20321210 20321306 -182007041 + MLT1J2 LTR MaLR 68 165 -285 334 186 0 17 chr4 20321450 20321509 -182006838 + MLT1I LTR MaLR 352 409 0 1925 179 144 2 chr4 20321802 20322198 -182006149 - LTR47A LTR ERVL 0 452 1 218 372 54 23 chr4 20322606 20322735 -182005612 + L2 LINE L2 2928 3060 -212 234 128 0 0 chr4 20323304 20323343 -182005004 + (T)n Simple_repeat Simple_repeat 1 39 0 754 320 37 10 chr4 20323788 20324085 -182004262 + L1M3c LINE L1 523 827 -5836 261 292 31 42 chr4 20324052 20324148 -182004199 + L1M3c LINE L1 1290 1384 -5269 * 284 264 64 18 chr4 20324176 20324286 -182004061 + L1M3c LINE L1 1315 1429 -5234 2517 254 32 4 chr4 20324348 20325077 -182003270 + L1M3c LINE L1 1342 2090 -4573 398 301 65 0 chr4 20325161 20325284 -182003063 - MIR SINE MIR -72 190 60 248 306 0 0 chr4 20325428 20325500 -182002847 + CT-rich Low_complexity Low_complexity 1 72 0 441 265 27 138 chr4 20327312 20327372 -182000975 - MLT1J LTR MaLR -140 371 306 2068 125 24 0 chr4 20327372 20327660 -182000687 + AluSq SINE Alu 1 295 -18 441 265 27 138 chr4 20327660 20327897 -182000450 - MLT1J LTR MaLR -205 306 107 36 0 0 0 chr4 20327899 20327935 -182000412 + AT_rich Low_complexity Low_complexity 1 36 0 467 298 147 31 chr4 20328162 20328554 -181999793 - LTR33A LTR ERVL -47 476 66 331 298 25 63 chr4 20328712 20328870 -181999477 + MIR SINE MIR 49 200 -62 242 312 47 53 chr4 20328982 20329152 -181999195 - L2 LINE L2 -31 3282 3114 868 329 40 3 chr4 20330979 20331353 -181996994 + LTR16B LTR ERVL 3 390 -74 214 250 0 33 chr4 20331534 20331594 -181996753 + MIR SINE MIR 104 161 -101 206 307 27 0 chr4 20331849 20331924 -181996423 + MIR SINE MIR 186 262 0 490 227 13 39 chr4 20331978 20332132 -181996215 - MER58 DNA MER1_type -108 233 84 2052 156 84 17 chr4 20332324 20332728 -181995619 - MSTB1 LTR MaLR -1 431 1 1360 220 72 0 chr4 20332853 20333171 -181995176 + MER58B DNA MER1_type 1 341 0 447 255 37 81 chr4 20334871 20335108 -181993239 + MLT1H1 LTR MaLR 39 266 -289 230 216 108 14 chr4 20335288 20335362 -181992985 + MLT1G1 LTR MaLR 515 595 0 1236 34 0 0 chr4 20335651 20335800 -181992547 + (TTC)n Simple_repeat Simple_repeat 2 150 0 429 81 0 0 chr4 20335801 20335863 -181992484 + (TC)n Simple_repeat Simple_repeat 1 62 0 2306 91 0 0 chr4 20337576 20337883 -181990464 + AluSx SINE Alu 1 307 -5 749 303 31 18 chr4 20337910 20338138 -181990209 + MIR SINE MIR 3 233 -29 252 0 0 0 chr4 20338542 20338570 -181989777 + (T)n Simple_repeat Simple_repeat 1 28 0 23 54 0 0 chr4 20338675 20338712 -181989635 + AT_rich Low_complexity Low_complexity 1 37 0 522 303 20 10 chr4 20338767 20338965 -181989382 + MIR SINE MIR 17 216 -46 25 0 0 0 chr4 20339299 20339324 -181989023 + AT_rich Low_complexity Low_complexity 1 25 0 234 0 0 0 chr4 20339371 20339397 -181988950 + (T)n Simple_repeat Simple_repeat 1 26 0 841 256 18 9 chr4 20339581 20339808 -181988539 + MIR SINE MIR 4 232 -30 279 324 109 61 chr4 20339898 20340275 -181988072 + L2 LINE L2 2834 3228 -85 397 400 5 5 chr4 20340488 20340673 -181987674 - MIR3 SINE MIR -4 204 20 674 277 109 5 chr4 20340905 20341125 -181987222 - MIR SINE MIR -14 248 6 2266 237 79 102 chr4 20341756 20342878 -181985469 - MER52A LTR ERV1 0 1755 660 664 222 98 35 chr4 20342879 20343045 -181985302 + MLT2B1 LTR ERVL 297 480 -40 602 49 12 0 chr4 20343045 20343127 -181985220 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 664 222 98 35 chr4 20343127 20343163 -181985184 + MLT2B1 LTR ERVL 480 512 -8 258 252 53 139 chr4 20343951 20344102 -181984245 - MIR3 SINE MIR -41 167 30 241 376 37 31 chr4 20345224 20345386 -181982961 - L2 LINE L2 -22 3250 3088 666 222 18 7 chr4 20345632 20345940 -181982407 - MLT1A1 LTR MaLR 0 365 1 331 240 171 8 chr4 20346179 20346308 -181982039 + MIR SINE MIR 49 198 -64 411 201 13 31 chr4 20346871 20347030 -181981317 + GA-rich Low_complexity Low_complexity 4 159 0 298 247 21 21 chr4 20347047 20347078 -181981269 + GA-rich Low_complexity Low_complexity 4 34 -62 1871 157 3 11 chr4 20347078 20347388 -181980959 + AluSx SINE Alu 1 308 0 298 247 21 21 chr4 20347388 20347448 -181980899 + GA-rich Low_complexity Low_complexity 33 96 0 30 27 0 0 chr4 20347479 20347516 -181980831 + AT_rich Low_complexity Low_complexity 1 37 0 1335 86 0 0 chr4 20347530 20347692 -181980655 - AluSq SINE Alu -151 162 1 333 253 126 41 chr4 20347934 20348203 -181980144 - HAL1 LINE L1 -105 2402 2111 240 288 105 37 chr4 20348383 20348574 -181979773 - HAL1 LINE L1 -193 2314 2111 957 359 53 33 chr4 20348841 20349984 -181978363 - ERVL LTR ERVL -435 5329 4164 253 200 0 0 chr4 20349998 20350053 -181978294 - MLT1B LTR MaLR -139 251 197 567 251 66 6 chr4 20350069 20350252 -181978095 + MLT1B LTR MaLR 195 388 -2 2827 221 24 14 chr4 20350256 20350967 -181977380 + MLT1B-int LTR MaLR 3 720 -651 278 204 72 90 chr4 20351141 20351264 -181977083 + MLT1A2 LTR MaLR 260 367 -7 730 328 81 30 chr4 20351388 20352029 -181976318 + L1MC4a LINE L1 4567 5240 -906 672 318 63 36 chr4 20352082 20352715 -181975632 + L1MC4a LINE L1 5310 5959 -1849 321 309 85 42 chr4 20352869 20353199 -181975148 + L1M4 LINE L1 3117 3460 -2686 397 312 78 56 chr4 20353473 20353832 -181974515 + MLT1I LTR MaLR 43 409 0 369 109 0 0 chr4 20354134 20354189 -181974158 + MLT1A1 LTR MaLR 1 55 -310 1803 175 24 0 chr4 20354191 20354633 -181973714 + AluJb SINE Alu 3 451 0 223 129 0 0 chr4 20354633 20354664 -181973683 + (GGGA)n Simple_repeat Simple_repeat 1 31 0 1493 189 29 3 chr4 20354666 20354979 -181973368 + MLT1A1 LTR MaLR 45 365 0 376 289 94 8 chr4 20355204 20355332 -181973015 - L2 LINE L2 -2 3311 3173 30 27 0 0 chr4 20355558 20355595 -181972752 + AT_rich Low_complexity Low_complexity 1 37 0 263 299 80 76 chr4 20355957 20356375 -181971972 - L2 LINE L2 -158 3155 2724 308 250 38 30 chr4 20356419 20356551 -181971796 + MER104 DNA Tc2 31 163 -17 398 177 16 8 chr4 20356649 20356773 -181971574 + L1M4 LINE L1 2847 2971 -3175 23 0 0 0 chr4 20356783 20356806 -181971541 + AT_rich Low_complexity Low_complexity 1 23 0 1385 102 0 0 chr4 20356895 20357101 -181971246 + L1P LINE L1 4833 5038 -1108 1806 175 75 34 chr4 20357653 20358092 -181970255 - LTR2B LTR ERV1 0 490 34 219 280 0 0 chr4 20358171 20358221 -181970126 + L2 LINE L2 3262 3311 -2 198 0 0 0 chr4 20359987 20360009 -181968338 + (CAA)n Simple_repeat Simple_repeat 3 24 0 591 195 207 6 chr4 20360430 20360599 -181967748 + Tigger3(Golem) DNA MER2_type 2835 3037 0 300 223 11 64 chr4 20360599 20360693 -181967654 - L1MC4 LINE L1 -1339 6703 6615 293 202 17 17 chr4 20360731 20360850 -181967497 + (TA)n Simple_repeat Simple_repeat 2 120 0 1302 238 122 19 chr4 20360891 20361302 -181967045 + MLT2B1 LTR ERVL 1 453 -67 276 30 0 0 chr4 20361310 20361343 -181967004 + (TG)n Simple_repeat Simple_repeat 2 34 0 256 167 59 20 chr4 20361350 20361452 -181966895 + (TTATA)n Simple_repeat Simple_repeat 3 108 0 307 50 0 0 chr4 20361452 20361492 -181966855 - HERVL LTR ERVL -5614 40 1 898 176 0 0 chr4 20361531 20361696 -181966651 + MER65A LTR ERV1 234 398 -47 2028 99 46 3 chr4 20362191 20362474 -181965873 + AluSg SINE Alu 1 295 -15 216 346 75 27 chr4 20362666 20362854 -181965493 + L2 LINE L2 1598 1794 -1520 997 213 43 3 chr4 20362883 20363212 -181965135 + L1P LINE L1 4960 5301 -845 916 245 90 97 chr4 20363351 20363465 -181964882 - L1M4 LINE L1 -1057 5089 4976 180 0 0 0 chr4 20363465 20363485 -181964862 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 916 245 90 97 chr4 20363485 20363971 -181964376 - L1M4 LINE L1 -1170 4976 4493 840 138 51 66 chr4 20364088 20364300 -181964047 + MLT2A2 LTR ERVL 298 453 0 1369 177 3 36 chr4 20364300 20364633 -181963714 - L1M2 LINE L1 -672 5619 5298 2452 266 38 2 chr4 20364868 20365654 -181962693 + L1 LINE L1 2270 3083 -3063 2075 128 24 0 chr4 20365654 20365942 -181962405 + AluSq SINE Alu 1 295 -18 385 243 0 0 chr4 20366105 20366179 -181962168 - MLT1J1 LTR MaLR -305 141 68 29 28 0 0 chr4 20366181 20366217 -181962130 + AT_rich Low_complexity Low_complexity 1 36 0 528 278 98 23 chr4 20366569 20366742 -181961605 + MIR SINE MIR 74 259 -3 2281 93 0 0 chr4 20367301 20367592 -181960755 + AluY SINE Alu 1 291 -20 410 234 73 44 chr4 20367646 20367783 -181960564 - MER5B DNA MER1_type -31 147 7 256 263 25 75 chr4 20368035 20368195 -181960152 + MER103 DNA DNA 2 153 -13 28 48 0 0 chr4 20368271 20368313 -181960034 + AT_rich Low_complexity Low_complexity 1 42 0 2198 110 0 7 chr4 20368428 20368737 -181959610 + AluSx SINE Alu 6 312 0 481 277 19 6 chr4 20369051 20369210 -181959137 + MLT1C LTR MaLR 1 161 -306 250 133 0 22 chr4 20369285 20369330 -181959017 + MLT1C LTR MaLR 226 269 -198 378 184 114 38 chr4 20369367 20369525 -181958822 - MLT2A2 LTR ERVL -1 452 283 2034 177 5 60 chr4 20369877 20370313 -181958034 + MLT2D LTR ERVL 3 414 0 2329 130 66 17 chr4 20371546 20371954 -181956393 - MSTA LTR MaLR 0 428 1 1930 129 31 34 chr4 20371954 20372335 -181956012 - MSTA-int LTR MaLR 0 1651 1272 21 0 0 0 chr4 20373217 20373238 -181955109 + AT_rich Low_complexity Low_complexity 1 21 0 297 346 41 60 chr4 20373715 20373981 -181954366 - L2 LINE L2 0 3272 3012 683 221 121 53 chr4 20374544 20374866 -181953481 + MER39 LTR ERV1 361 704 -3 3476 151 42 2 chr4 20374984 20375599 -181952748 + MER39B LTR ERV1 14 653 0 237 65 0 0 chr4 20375702 20375733 -181952614 + (CA)n Simple_repeat Simple_repeat 2 32 0 1424 115 12 16 chr4 20375736 20375988 -181952359 + LTR1 LTR ERV1 1 251 -534 411 262 36 91 chr4 20376595 20376816 -181951531 + MER58C DNA MER1_type 5 213 -2 311 274 97 32 chr4 20377106 20377230 -181951117 + L1ME3A LINE L1 6030 6161 -9 303 308 69 8 chr4 20378274 20378404 -181949943 + MIR SINE MIR 13 150 -112 512 248 215 0 chr4 20378874 20379023 -181949324 - MER5A DNA MER1_type 0 189 9 263 312 55 28 chr4 20379057 20379166 -181949181 - MER5B DNA MER1_type -41 137 26 254 254 33 160 chr4 20379407 20379448 -181948899 + L2 LINE L2 3025 3070 -202 962 207 42 42 chr4 20379448 20379665 -181948682 + MER20 DNA MER1_type 3 219 0 254 254 33 160 chr4 20379665 20379804 -181948543 + L2 LINE L2 3070 3182 -90 363 169 0 0 chr4 20379836 20379907 -181948440 + (TG)n Simple_repeat Simple_repeat 2 72 0 28 0 0 0 chr4 20379910 20379938 -181948409 + AT_rich Low_complexity Low_complexity 1 28 0 2102 296 64 58 chr4 20380870 20381255 -181947092 + L2 LINE L2 785 1166 -2148 303 28 0 0 chr4 20381255 20381291 -181947056 + (CA)n Simple_repeat Simple_repeat 1 36 0 2102 296 64 58 chr4 20381291 20381379 -181946968 + L2 LINE L2 1166 1252 -2062 809 216 66 33 chr4 20381379 20381592 -181946755 - MER58A DNA MER1_type 0 224 5 2102 296 64 58 chr4 20381592 20381673 -181946674 + L2 LINE L2 1252 1331 -1983 2579 138 2 0 chr4 20381673 20382073 -181946274 - MER57A LTR ERV1 -1 402 2 2102 296 64 58 chr4 20382073 20382798 -181945549 + L2 LINE L2 1331 2074 -1240 744 246 125 37 chr4 20382820 20383092 -181945255 + L2 LINE L2 3017 3312 -1 1761 139 89 4 chr4 20383102 20383382 -181944965 - AluSc SINE Alu -5 304 1 241 300 117 39 chr4 20383458 20383638 -181944709 - L3 LINE CR1 -8 1569 1376 388 93 0 0 chr4 20383778 20383832 -181944515 + THE1B LTR MaLR 1 54 -310 367 133 193 24 chr4 20383833 20383916 -181944431 + THE1B LTR MaLR 169 265 -99 315 345 44 34 chr4 20384034 20384240 -181944107 - MIR SINE MIR -52 210 3 605 277 98 13 chr4 20384534 20384769 -181943578 + MIR SINE MIR 3 257 -5 1913 130 53 20 chr4 20385803 20386104 -181942243 - AluSx SINE Alu -1 311 1 402 287 213 7 chr4 20386368 20386518 -181941829 + MER5A DNA MER1_type 9 189 0 813 286 69 13 chr4 20386574 20387036 -181941311 - MER113 DNA MER1_type? -33 488 1 287 200 0 100 chr4 20387112 20387192 -181941155 - MER5A DNA MER1_type -83 106 35 696 257 33 0 chr4 20387385 20387568 -181940779 - MER5A DNA MER1_type 0 189 1 249 287 46 35 chr4 20388164 20388251 -181940096 + L2 LINE L2 3222 3309 -4 21 36 0 0 chr4 20388577 20388605 -181939742 + AT_rich Low_complexity Low_complexity 1 28 0 250 59 78 0 chr4 20388699 20388750 -181939597 + A-rich Low_complexity Low_complexity 1 55 0 948 206 57 14 chr4 20388965 20389174 -181939173 - MER20 DNA MER1_type 0 219 2 219 233 0 0 chr4 20389277 20389320 -181939027 + CT-rich Low_complexity Low_complexity 4 46 0 1184 160 82 10 chr4 20389644 20389850 -181938497 + AluSq SINE Alu 1 221 -92 400 171 0 0 chr4 20389955 20390025 -181938322 + AluSq SINE Alu 226 295 -18 1261 317 88 25 chr4 20390149 20390856 -181937491 - L2 LINE L2 -411 2903 2153 22 88 0 0 chr4 20391638 20391695 -181936652 + AT_rich Low_complexity Low_complexity 1 57 0 203 200 18 36 chr4 20391808 20391884 -181936463 + GA-rich Low_complexity Low_complexity 1 74 0 297 309 66 20 chr4 20392019 20392171 -181936176 + MIR SINE MIR 30 188 -74 545 304 84 21 chr4 20392181 20392418 -181935929 - MIR SINE MIR -4 258 7 195 42 0 0 chr4 20393368 20393392 -181934955 + (TTTTC)n Simple_repeat Simple_repeat 4 27 0 353 169 101 0 chr4 20395881 20395970 -181932377 - MLT2C2 LTR ERVL -321 143 46 252 318 0 0 chr4 20395970 20396036 -181932311 + L2 LINE L2 3234 3299 -14 339 113 0 0 chr4 20396685 20396738 -181931609 + (A)n Simple_repeat Simple_repeat 1 53 0 323 308 58 8 chr4 20397325 20397445 -181930902 + MIR SINE MIR 40 165 -97 674 305 156 19 chr4 20397551 20397980 -181930367 - L2 LINE L2 -2214 1100 613 195 350 58 19 chr4 20398014 20398117 -181930230 + MIR SINE MIR 38 144 -64 2064 132 30 0 chr4 20398125 20398420 -181929927 + AluSx SINE Alu 1 304 -8 204 267 0 0 chr4 20398768 20398813 -181929534 - L2 LINE L2 -5 3267 3223 247 368 105 0 chr4 20399272 20399386 -181928961 + L2 LINE L2 3136 3261 -11 27 0 0 0 chr4 20399806 20399833 -181928514 + AT_rich Low_complexity Low_complexity 1 27 0 340 330 63 10 chr4 20399901 20400107 -181928240 - MIR SINE MIR 0 262 46 265 250 297 16 chr4 20400204 20400332 -181928015 - MIR SINE MIR -26 236 73 196 277 0 0 chr4 20400385 20400432 -181927915 + L2 LINE L2 3209 3255 -17 2214 105 0 20 chr4 20400952 20401256 -181927091 - AluSg SINE Alu -12 298 1 24 0 0 0 chr4 20401300 20401324 -181927023 + AT_rich Low_complexity Low_complexity 1 24 0 191 225 25 0 chr4 20401592 20401632 -181926715 + L2 LINE L2 3252 3292 -21 229 297 16 0 chr4 20401714 20401778 -181926569 + MIR SINE MIR 47 111 -151 187 263 0 70 chr4 20401886 20401943 -181926404 - L2 LINE L2 -15 3257 3205 207 245 0 20 chr4 20402390 20402439 -181925908 + MIR SINE MIR 97 144 -118 259 298 50 41 chr4 20402718 20402839 -181925508 - MLT1J LTR MaLR -64 447 326 433 152 0 95 chr4 20402995 20403100 -181925247 + L1M2 LINE L1 5452 5546 -754 471 318 41 82 chr4 20403195 20403560 -181924787 + L2 LINE L2 2923 3272 0 234 0 0 0 chr4 20403905 20403931 -181924416 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2008 123 40 7 chr4 20404223 20404523 -181923824 + AluSg SINE Alu 1 310 0 21 36 0 0 chr4 20405894 20405922 -181922425 + AT_rich Low_complexity Low_complexity 1 28 0 616 328 43 17 chr4 20406045 20406280 -181922067 + MIR SINE MIR 11 251 -11 217 368 0 0 chr4 20406311 20406387 -181921960 + L3 LINE CR1 1495 1570 -7 257 305 168 30 chr4 20406668 20406835 -181921512 + MIR SINE MIR 21 210 -52 868 246 24 5 chr4 20407034 20407241 -181921106 - MER58A DNA MER1_type -13 211 1 205 330 21 21 chr4 20407525 20407619 -181920728 - L2 LINE L2 -349 2964 2871 388 326 71 52 chr4 20407867 20408192 -181920155 - L2 LINE L2 -610 2704 2374 21 36 0 0 chr4 20409340 20409368 -181918979 + AT_rich Low_complexity Low_complexity 1 28 0 2038 125 0 27 chr4 20410823 20411118 -181917229 + AluSx SINE Alu 9 295 -17 387 105 40 26 chr4 20411699 20411775 -181916572 + MER116 DNA Mariner 4 80 0 198 167 0 0 chr4 20412249 20412285 -181916062 + CT-rich Low_complexity Low_complexity 2 37 0 1965 154 7 0 chr4 20412454 20412752 -181915595 + AluSx SINE Alu 1 300 -12 220 256 80 51 chr4 20413052 20413189 -181915158 + L3 LINE CR1 974 1114 -463 850 190 36 137 chr4 20413392 20413620 -181914727 - MLT1A1 LTR MaLR -38 327 148 536 115 0 0 chr4 20413620 20413698 -181914649 - MADE1 DNA Mariner -2 78 1 850 190 36 137 chr4 20413698 20413833 -181914514 - MLT1A1 LTR MaLR -217 148 1 1713 198 23 5 chr4 20414250 20414634 -181913713 - MER57A LTR ERV1 -2 401 11 200 369 138 0 chr4 20415637 20415767 -181912580 - L2 LINE L2 0 3313 3166 304 342 61 77 chr4 20415772 20416164 -181912183 - L2 LINE L2 -8 3264 2879 380 292 124 27 chr4 20416193 20416450 -181911897 - L2 LINE L2 -483 2831 2550 2033 229 21 6 chr4 20416816 20417283 -181911064 + MLT1D LTR MaLR 3 476 -29 303 28 0 0 chr4 20417283 20417319 -181911028 + (TG)n Simple_repeat Simple_repeat 1 36 0 5448 123 22 9 chr4 20417343 20418289 -181910058 - L1PA13 LINE L1 0 6163 5210 454 240 20 20 chr4 20518475 20518575 -181809772 + MER41E LTR ERV1 413 512 0 * 3829 139 28 51 chr4 20518575 20518788 -181809559 + MER4D LTR ERV1 197 414 -489 2199 123 0 7 chr4 20518788 20519097 -181809250 - AluSq SINE Alu -6 307 1 3829 139 28 51 chr4 20519097 20519607 -181808740 + MER4D LTR ERV1 414 903 0 1793 191 21 0 chr4 20519690 20520025 -181808322 - MER7A DNA MER2_type -4 342 3 189 0 0 0 chr4 20520025 20520046 -181808301 + (TG)n Simple_repeat Simple_repeat 2 22 0 2640 155 27 31 chr4 20520157 20520673 -181807674 - L1MC1 LINE L1 -186 6147 5634 216 0 0 0 chr4 20520747 20520771 -181807576 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 2424 80 6 3 chr4 20521588 20521913 -181806434 + MLT2A2 LTR ERVL 1 326 -127 398 147 29 10 chr4 20522023 20522125 -181806222 + (TA)n Simple_repeat Simple_repeat 2 105 0 229 250 60 0 chr4 20522138 20522222 -181806125 - L1MC4 LINE L1 -1339 6703 6615 347 192 13 0 chr4 20522227 20522305 -181806042 + (TA)n Simple_repeat Simple_repeat 2 80 0 299 127 0 18 chr4 20522305 20522360 -181805987 + MLT2A1 LTR ERVL 390 443 -1 5639 132 6 7 chr4 20523000 20524087 -181804260 + L1PA14 LINE L1 5069 6154 -7 189 0 0 0 chr4 20524229 20524250 -181804097 + (CA)n Simple_repeat Simple_repeat 2 22 0 2060 244 59 19 chr4 20525514 20526042 -181802305 + MLT2B3 LTR ERVL 6 554 0 22 35 0 0 chr4 20526571 20526600 -181801747 + AT_rich Low_complexity Low_complexity 1 29 0 742 181 16 11 chr4 20527178 20527265 -181801082 + MER53 DNA DNA 5 90 -99 393 95 0 0 chr4 20527265 20527328 -181801019 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 742 181 16 11 chr4 20527328 20527422 -181800925 + MER53 DNA DNA 90 187 -2 1607 200 7 10 chr4 20527548 20527843 -181800504 + AluJo SINE Alu 3 296 -16 489 189 38 0 chr4 20527854 20527986 -181800361 + GA-rich Low_complexity Low_complexity 2 138 0 25 0 0 0 chr4 20529577 20529602 -181798745 + AT_rich Low_complexity Low_complexity 1 25 0 689 111 0 0 chr4 20529734 20529833 -181798514 + AluS SINE Alu 1 99 -214 540 222 44 72 chr4 20530207 20530387 -181797960 - MER97b DNA MER1_type? -874 179 5 245 329 132 20 chr4 20530398 20530550 -181797797 - MLT1J2 LTR MaLR -12 438 270 180 179 0 0 chr4 20531441 20531480 -181796867 + (TG)n Simple_repeat Simple_repeat 2 40 0 941 211 105 8 chr4 20531518 20531939 -181796408 - MLT1D LTR MaLR -18 487 1 198 0 0 0 chr4 20531954 20531976 -181796371 + (A)n Simple_repeat Simple_repeat 1 22 0 199 192 39 19 chr4 20532316 20532368 -181795979 - MIR SINE MIR -103 159 107 1035 211 98 92 chr4 20533418 20533865 -181794482 + MER66A LTR ERV1 59 467 -11 227 298 30 23 chr4 20534109 20534240 -181794107 + L1ME LINE L1 5608 5739 -382 2083 115 30 7 chr4 20534258 20534563 -181793784 - AluSx SINE Alu 0 312 1 28 29 0 0 chr4 20534710 20534745 -181793602 + AT_rich Low_complexity Low_complexity 1 35 0 438 319 136 8 chr4 20535143 20535378 -181792969 + MLT1K LTR MaLR 7 271 -317 1275 233 31 85 chr4 20535549 20536089 -181792258 - MER21B LTR ERV1 -56 807 384 236 247 59 71 chr4 20536097 20536182 -181792165 - MER21B LTR ERV1 -675 188 105 5229 111 42 1 chr4 20536212 20536990 -181791357 - L1PA13 LINE L1 -3 6160 5351 436 179 26 0 chr4 20536980 20537058 -181791289 - L1P LINE L1 -2457 3689 3610 * 476 311 70 18 chr4 20537381 20537609 -181790738 - L2 LINE L2 -337 2977 2738 351 0 0 0 chr4 20537769 20537808 -181790539 + (CA)n Simple_repeat Simple_repeat 2 40 0 444 286 8 8 chr4 20537855 20537974 -181790373 + L2 LINE L2 3190 3308 -5 469 341 16 6 chr4 20538749 20538931 -181789416 - MIR3 SINE MIR -13 195 12 334 269 41 112 chr4 20539288 20539556 -181788791 + MIR SINE MIR 13 261 -1 240 324 59 47 chr4 20539669 20539839 -181788508 + MIR SINE MIR 59 230 -32 2218 49 59 0 chr4 20540368 20540655 -181787692 + AluY SINE Alu 1 304 -7 1006 198 0 34 chr4 20542633 20542840 -181785507 - MER3 DNA MER1_type -7 202 3 221 392 30 6 chr4 20543605 20543771 -181784576 - MIR SINE MIR -3 259 90 1421 229 44 7 chr4 20544274 20544729 -181783618 - L1M4 LINE L1 -2884 3262 2791 4966 213 39 71 chr4 20544989 20546943 -181781404 + L1MB7 LINE L1 3587 5459 -719 2623 225 8 8 chr4 20546952 20547600 -181780747 + L1MB7 LINE L1 5518 6165 -19 497 299 32 6 chr4 20549119 20549276 -181779071 + MER97b DNA MER1_type? 19 179 -874 345 254 9 70 chr4 20549366 20549480 -181778867 + L2 LINE L2 3204 3310 -3 198 319 167 29 chr4 20549887 20550025 -181778322 - MIR SINE MIR -46 216 60 336 143 18 0 chr4 20550085 20550141 -181778206 + Alu SINE Alu 235 291 -11 332 268 24 16 chr4 20550271 20550394 -181777953 + (TA)n Simple_repeat Simple_repeat 2 125 0 495 73 0 0 chr4 20551601 20551669 -181776678 + (CA)n Simple_repeat Simple_repeat 1 68 0 255 329 0 13 chr4 20551933 20552009 -181776338 - MLT1K LTR MaLR -324 264 190 726 308 75 39 chr4 20553237 20553649 -181774698 + MLT1J2 LTR MaLR 2 428 -22 206 233 0 0 chr4 20554096 20554139 -181774208 + (CATTT)n Simple_repeat Simple_repeat 2 44 0 484 286 79 26 chr4 20554139 20554366 -181773981 - L1MD1 LINE L1 -397 5845 5607 * 4179 196 36 24 chr4 20554365 20555303 -181773044 - L1MA10 LINE L1 -103 6231 5282 4526 219 16 20 chr4 20555309 20556419 -181771928 + L1 LINE L1 4125 5232 -914 2569 154 9 2 chr4 20556419 20556841 -181771506 - MSTA LTR MaLR 0 428 4 4526 219 16 20 chr4 20556841 20556887 -181771460 + L1 LINE L1 5232 5277 -869 362 202 75 11 chr4 20556938 20557032 -181771315 - L1MC1 LINE L1 0 6333 6234 9158 196 17 59 chr4 20557138 20557624 -181770723 - L1PA13 LINE L1 -2523 4274 3769 2153 105 7 0 chr4 20557624 20557918 -181770429 - AluSg SINE Alu -14 296 1 9158 196 17 59 chr4 20557918 20558259 -181770088 - L1PA13 LINE L1 -3028 3769 3415 489 37 0 98 chr4 20558259 20558311 -181770036 - MADE1 DNA Mariner -1 79 36 2189 121 0 3 chr4 20558311 20558617 -181769730 + AluSq SINE Alu 1 305 -8 489 37 0 98 chr4 20558617 20558646 -181769701 - MADE1 DNA Mariner -44 36 6 9158 196 17 59 chr4 20558646 20560766 -181767581 - L1PA13 LINE L1 -3382 3415 1396 374 298 90 22 chr4 20560769 20560947 -181767400 - L1PA13 LINE L1 -5529 1258 1069 361 247 24 102 chr4 20560987 20561153 -181767194 - MER21B LTR ERV1 -710 153 1 202 322 44 11 chr4 20563581 20563671 -181764676 + MIR3 SINE MIR 106 198 -10 675 270 34 39 chr4 20563774 20564007 -181764340 - MIR SINE MIR -30 232 1 2069 88 3 61 chr4 20564748 20565076 -181763271 + AluSg SINE Alu 1 309 -1 282 232 0 0 chr4 20565167 20565223 -181763124 + MIR SINE MIR 92 147 -115 501 195 0 0 chr4 20565848 20565925 -181762422 + MER2 DNA MER2_type 269 345 0 28 0 0 0 chr4 20566295 20566323 -181762024 + AT_rich Low_complexity Low_complexity 1 28 0 305 206 0 128 chr4 20566370 20566472 -181761875 + L1MC4 LINE L1 6614 6702 -1340 30 69 0 0 chr4 20566533 20566591 -181761756 + AT_rich Low_complexity Low_complexity 1 58 0 205 352 14 14 chr4 20566626 20566697 -181761650 + L2 LINE L2 3193 3263 -9 1804 97 8 0 chr4 20566702 20566960 -181761387 - L1PA13 LINE L1 -9 6154 5895 35 24 0 0 chr4 20567063 20567105 -181761242 + AT_rich Low_complexity Low_complexity 1 42 0 3868 87 9 9 chr4 20567140 20567702 -181760645 - L1MA1 LINE L1 0 6302 5741 200 293 10 101 chr4 20567797 20567896 -181760451 + L3 LINE CR1 13 102 -1475 507 253 19 136 chr4 20567929 20568113 -181760234 - L2 LINE L2 0 3313 3166 1904 145 23 54 chr4 20568113 20568500 -181759847 + THE1C LTR MaLR 1 375 0 507 253 19 136 chr4 20568500 20568572 -181759775 - L2 LINE L2 -147 3166 3087 481 299 7 21 chr4 20568929 20569073 -181759274 + MER58B DNA MER1_type 174 315 -26 369 62 0 0 chr4 20569080 20569128 -181759219 + (CA)n Simple_repeat Simple_repeat 1 48 0 504 261 103 69 chr4 20569447 20569837 -181758510 + MLT1L LTR MaLR 194 596 -19 24 32 0 0 chr4 20570077 20570108 -181758239 + AT_rich Low_complexity Low_complexity 1 31 0 2213 119 0 0 chr4 20570635 20570938 -181757409 + AluSq SINE Alu 1 303 -10 277 361 94 11 chr4 20571191 20571371 -181756976 + MIR SINE MIR 32 226 -36 337 217 14 0 chr4 20572063 20572132 -181756215 + L2 LINE L2 3244 3313 0 6585 11 0 3 chr4 20572349 20573098 -181755249 + L1HS LINE L1 5409 6155 0 270 81 0 0 chr4 20573101 20573138 -181755209 + (A)n Simple_repeat Simple_repeat 1 37 0 304 379 35 6 chr4 20573543 20573717 -181754630 + MIR SINE MIR 36 214 -48 540 292 33 53 chr4 20573759 20574060 -181754287 - MLT1L LTR MaLR 0 615 321 2097 79 4 0 chr4 20574406 20574671 -181753676 - AluSg SINE Alu -32 278 13 225 0 0 0 chr4 20576837 20576862 -181751485 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 21 36 0 0 chr4 20577114 20577142 -181751205 + AT_rich Low_complexity Low_complexity 1 28 0 1026 117 17 22 chr4 20577247 20577426 -181750921 + L1PA11 LINE L1 5995 6172 -2 25 0 0 0 chr4 20577948 20577973 -181750374 + AT_rich Low_complexity Low_complexity 1 25 0 2130 92 16 0 chr4 20578125 20578431 -181749916 + L1PA13 LINE L1 5850 6160 -3 21 0 0 0 chr4 20578433 20578454 -181749893 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr4 20578496 20578518 -181749829 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 377 254 76 17 chr4 20579829 20579947 -181748400 + MER20B DNA MER1_type 65 189 -594 225 108 0 0 chr4 20580088 20580125 -181748222 + (CA)n Simple_repeat Simple_repeat 2 38 0 834 261 11 70 chr4 20581947 20582304 -181746043 - MER58B DNA MER1_type 0 341 6 393 216 57 0 chr4 20582316 20582404 -181745943 + Charlie5 DNA MER1_type 13 105 -2507 1434 202 29 13 chr4 20582418 20582794 -181745553 + Charlie5 DNA MER1_type 2242 2623 0 821 310 64 42 chr4 20582796 20583157 -181745190 + MLT1J2 LTR MaLR 49 417 -33 1340 306 66 44 chr4 20583204 20584023 -181744324 + L1MC4a LINE L1 44 880 -5516 1509 247 90 66 chr4 20584023 20584868 -181743479 + L1MC4a LINE L1 2428 3292 -2923 897 234 40 45 chr4 20584854 20585208 -181743139 + L1MC4a LINE L1 5082 5433 -782 * 529 299 69 35 chr4 20585351 20585582 -181742765 + L1ME1 LINE L1 5909 6147 -19 427 148 0 0 chr4 20585593 20585654 -181742693 - 5S rRNA rRNA -29 92 32 6552 77 17 2 chr4 20585655 20586734 -181741613 + L1PA7 LINE L1 5067 6154 0 23 33 0 0 chr4 20587299 20587329 -181741018 + AT_rich Low_complexity Low_complexity 1 30 0 681 393 33 24 chr4 20588367 20588914 -181739433 + MLT1K LTR MaLR 37 588 0 227 266 63 13 chr4 20590200 20590279 -181738068 + MIR SINE MIR 82 164 -98 347 338 82 21 chr4 20590481 20590821 -181737526 + L1MC4a LINE L1 5580 5940 -1937 207 336 76 25 chr4 20591984 20592103 -181736244 - MIR3 SINE MIR -1 207 83 537 183 9 0 chr4 20592690 20592805 -181735542 - L1MA4 LINE L1 -139 6161 6046 532 252 0 0 chr4 20592806 20592941 -181735406 + L1MA4 LINE L1 6155 6289 -11 209 348 101 14 chr4 20592955 20593093 -181735254 + L3 LINE CR1 829 978 -599 40 21 0 0 chr4 20593154 20593201 -181735146 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr4 20593658 20593680 -181734667 + AT_rich Low_complexity Low_complexity 1 22 0 234 309 47 50 chr4 20593802 20593976 -181734371 - MIR SINE MIR -67 141 20 292 319 29 30 chr4 20594146 20594296 -181734051 + MIR SINE MIR 16 157 -65 228 237 68 0 chr4 20595818 20595877 -181732470 + L2 LINE L2 3209 3271 -1 224 368 77 7 chr4 20596160 20596315 -181732032 + MIR3 SINE MIR 20 185 -23 197 231 0 183 chr4 20596374 20596478 -181731869 + L2 LINE L2 3229 3313 0 1895 182 50 40 chr4 20596939 20597418 -181730929 - LTR2B LTR ERV1 0 490 7 1572 218 77 48 chr4 20598308 20598826 -181729521 + LTR55 LTR ERV 6 538 -10 286 333 16 8 chr4 20600033 20600159 -181728188 - MIR SINE MIR -16 246 120 300 269 54 11 chr4 20600326 20600419 -181727928 + L1MC4 LINE L1 6616 6712 -1330 256 187 32 5 chr4 20601546 20601621 -181726726 + AluSx SINE Alu 1 45 -263 5764 66 0 4 chr4 20601621 20602351 -181725996 - LTR17 LTR ERV1 -53 727 1 1686 108 29 0 chr4 20602351 20602591 -181725756 + AluSx SINE Alu 42 288 -24 377 322 93 37 chr4 20602717 20602931 -181725416 + LTR33 LTR ERVL 59 284 -237 651 309 77 26 chr4 20604529 20604918 -181723429 - MLT1I LTR MaLR 0 409 1 21 0 0 0 chr4 20604994 20605015 -181723332 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 20605442 20605466 -181722881 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr4 20606126 20606158 -181722189 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr4 20606360 20606382 -181721965 + AT_rich Low_complexity Low_complexity 1 22 0 363 311 57 0 chr4 20606388 20606510 -181721837 - MIR SINE MIR -22 240 112 6351 86 6 9 chr4 20606520 20608298 -181720049 + L1PA10 LINE L1 4376 6156 -12 25 31 0 0 chr4 20608630 20608662 -181719685 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr4 20608951 20608973 -181719374 + AT_rich Low_complexity Low_complexity 1 22 0 442 198 0 0 chr4 20609211 20609292 -181719055 + Charlie7 DNA MER1_type 1670 1750 -862 349 281 96 7 chr4 20609753 20609888 -181718459 + MIR SINE MIR 98 244 -18 208 89 133 0 chr4 20610351 20610396 -181717951 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 227 209 0 0 chr4 20611193 20611236 -181717111 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 531 102 0 0 chr4 20611442 20611530 -181716817 + (CA)n Simple_repeat Simple_repeat 1 88 0 256 138 0 103 chr4 20612144 20612202 -181716145 + L2 LINE L2 3262 3313 0 613 241 86 0 chr4 20612316 20612478 -181715869 + MIR SINE MIR 3 178 -84 220 26 0 51 chr4 20612541 20612580 -181715767 + (TTA)n Simple_repeat Simple_repeat 3 39 0 668 0 0 0 chr4 20612580 20612655 -181715692 - L1PA4 LINE L1 -18 6137 6063 2095 123 150 5 chr4 20613209 20613583 -181714764 - MSTA LTR MaLR 0 428 1 6706 127 16 3 chr4 20613661 20614769 -181713578 + L1MA3 LINE L1 5175 6297 -8 1781 204 44 3 chr4 20615594 20615961 -181712386 - MLT1B LTR MaLR -8 382 1 256 336 15 0 chr4 20618140 20618277 -181710070 + (TA)n Simple_repeat Simple_repeat 2 140 0 23 0 0 0 chr4 20619172 20619195 -181709152 + AT_rich Low_complexity Low_complexity 1 23 0 195 100 0 0 chr4 20619400 20619430 -181708917 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr4 20619988 20620009 -181708338 + AT_rich Low_complexity Low_complexity 1 21 0 2248 146 8 6 chr4 20620065 20620428 -181707919 + THE1B LTR MaLR 1 364 0 444 299 87 43 chr4 20620790 20621345 -181707002 - L1ME4a LINE L1 -18 6103 5525 1595 151 107 20 chr4 20621524 20621869 -181706478 + THE1C LTR MaLR 1 375 0 351 324 108 32 chr4 20622143 20622458 -181705889 - L1ME4a LINE L1 -2155 3991 3653 873 276 14 5 chr4 20622538 20622759 -181705588 + L2 LINE L2 2558 2780 -534 213 281 0 0 chr4 20623083 20623140 -181705207 + (TATG)n Simple_repeat Simple_repeat 4 60 0 21 57 0 0 chr4 20623665 20623700 -181704647 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 20623996 20624019 -181704328 + AT_rich Low_complexity Low_complexity 1 23 0 1288 80 0 114 chr4 20624326 20624563 -181703784 - L1MA1 LINE L1 -4 6298 6089 2058 96 3 17 chr4 20625545 20625846 -181702501 + AluSp SINE Alu 1 297 -16 192 40 0 0 chr4 20625846 20625871 -181702476 + (CA)n Simple_repeat Simple_repeat 2 26 0 230 102 34 17 chr4 20625895 20625954 -181702393 - LTR66 LTR ERVL -159 451 392 377 385 39 0 chr4 20626404 20626560 -181701787 + MIR SINE MIR 12 173 -89 2375 78 7 0 chr4 20626608 20626914 -181701433 + AluSg SINE Alu 1 308 -2 216 292 0 0 chr4 20626952 20627000 -181701347 - L2 LINE L2 -40 3232 3185 282 248 20 20 chr4 20627024 20627125 -181701222 - L1MB7 LINE L1 -11 6173 6073 4613 181 31 31 chr4 20627144 20627540 -181700807 - L1MA10 LINE L1 -10 6324 5929 284 47 0 23 chr4 20627540 20627583 -181700764 + (TTA)n Simple_repeat Simple_repeat 2 43 0 2055 120 0 7 chr4 20627585 20627869 -181700478 - AluSx SINE Alu -30 282 1 4613 181 31 31 chr4 20627869 20628516 -181699831 - L1MA10 LINE L1 -405 5929 5278 367 343 44 36 chr4 20629256 20629504 -181698843 - MIR SINE MIR 0 262 13 195 100 0 0 chr4 20629637 20629667 -181698680 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 710 58 101 6 chr4 20629999 20630546 -181697801 + (TA)n Simple_repeat Simple_repeat 1 599 0 1937 85 0 0 chr4 20630546 20630793 -181697554 - AluY SINE Alu -24 287 41 848 299 67 26 chr4 20631066 20631601 -181696746 - L1ME4a LINE L1 -237 5884 5328 1127 196 0 10 chr4 20632257 20632456 -181695891 + MER4D LTR ERV1 1 197 -706 2859 150 11 0 chr4 20632539 20632985 -181695362 + MER41E LTR ERV1 1 451 -61 21 0 0 0 chr4 20633593 20633614 -181694733 + AT_rich Low_complexity Low_complexity 1 21 0 182 342 13 26 chr4 20633630 20633706 -181694641 + MIR SINE MIR 168 242 -20 394 298 7 7 chr4 20634723 20634864 -181693483 + MARNA DNA Mariner 241 381 -205 201 226 97 0 chr4 20635312 20635374 -181692973 - MIR SINE MIR -114 148 81 192 143 0 0 chr4 20635583 20635625 -181692722 + (GA)n Simple_repeat Simple_repeat 2 43 0 512 192 33 0 chr4 20636114 20636234 -181692113 - L1MA6 LINE L1 -3 7716 7593 4113 181 86 11 chr4 20636249 20637800 -181690547 - L1MA6 LINE L1 -326 7393 5728 3591 239 47 39 chr4 20637803 20638269 -181690078 - L1MA6 LINE L1 -2885 4680 4219 2229 78 4 0 chr4 20638269 20638599 -181689748 + AluY SINE Alu 1 331 0 3591 239 47 39 chr4 20638599 20639604 -181688743 - L1MA6 LINE L1 -3346 4219 3177 1602 145 69 4 chr4 20639604 20639866 -181688481 - AluSq SINE Alu -2 311 33 3591 239 47 39 chr4 20639866 20640624 -181687723 - L1MA6 LINE L1 -4388 3177 2427 186 43 0 0 chr4 20640660 20640683 -181687664 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 828 204 80 32 chr4 20641011 20641324 -181687023 - L1M2c LINE L1 -4865 1924 1597 2750 79 3 0 chr4 20641577 20641931 -181686416 + THE1A LTR MaLR 1 355 0 10410 101 62 1 chr4 20641931 20643421 -181684926 + THE1A-int LTR MaLR 1 1580 0 2711 78 3 8 chr4 20643421 20643778 -181684569 + THE1A LTR MaLR 1 355 0 1252 314 73 34 chr4 20644027 20644641 -181683706 - L1M2c LINE L1 -6132 657 20 23 0 0 0 chr4 20644852 20644875 -181683472 + AT_rich Low_complexity Low_complexity 1 23 0 1747 179 0 29 chr4 20645267 20645575 -181682772 - AluJb SINE Alu -13 299 1 276 354 15 8 chr4 20646300 20646430 -181681917 - MIR3 SINE MIR -1 207 77 2638 108 3 16 chr4 20647197 20647399 -181680948 + THE1B LTR MaLR 1 197 -167 6473 112 41 17 chr4 20647399 20648445 -181679902 - MER11C LTR ERVK 0 1071 1 2638 108 3 16 chr4 20648445 20648611 -181679736 + THE1B LTR MaLR 197 364 0 502 292 173 7 chr4 20648759 20649093 -181679254 + MLT1G1 LTR MaLR 176 594 -1 268 292 33 58 chr4 20649480 20649600 -181678747 + MLT1H1 LTR MaLR 32 148 -407 1114 252 78 20 chr4 20649639 20649913 -181678434 - MLT1A1 LTR MaLR 0 365 65 1116 206 93 44 chr4 20649913 20650234 -181678113 + MER44D DNA MER2_type 1 607 -2 1114 252 78 20 chr4 20650234 20650304 -181678043 - MLT1A1 LTR MaLR -300 65 1 276 285 106 22 chr4 20650425 20650604 -181677743 + MLT1H1 LTR MaLR 362 555 0 5323 142 58 45 chr4 20650893 20651437 -181676910 + Tigger3b DNA MER2_type 142 677 -2351 1715 170 10 3 chr4 20651437 20651731 -181676616 + AluJb SINE Alu 1 296 -16 5323 142 58 45 chr4 20651731 20652262 -181676085 + Tigger3b DNA MER2_type 677 1231 0 253 305 24 0 chr4 20652912 20652994 -181675353 - L2 LINE L2 -5 3308 3225 198 103 0 0 chr4 20653017 20653046 -181675301 + (T)n Simple_repeat Simple_repeat 1 29 0 344 355 41 17 chr4 20654426 20654598 -181673749 + MIR SINE MIR 6 181 -81 192 163 143 41 chr4 20655278 20655327 -181673020 - MIR SINE MIR -89 173 120 305 354 0 0 chr4 20655881 20656025 -181672322 + L1ME3A LINE L1 6027 6170 0 266 216 155 0 chr4 20656301 20656398 -181671949 + MLT1L LTR MaLR 439 550 -65 1514 164 14 0 chr4 20656422 20656703 -181671644 - L1MA5 LINE L1 -6 6294 6010 401 159 28 19 chr4 20656727 20656834 -181671513 + CT-rich Low_complexity Low_complexity 2 109 0 697 271 201 23 chr4 20657395 20657970 -181670377 + L2 LINE L2 2401 3073 -240 382 289 72 48 chr4 20658009 20658258 -181670089 + L2 LINE L2 2985 3239 -74 2216 88 7 39 chr4 20658278 20658585 -181669762 + AluSg SINE Alu 1 297 -13 227 255 0 0 chr4 20659269 20659320 -181669027 + (CA)n Simple_repeat Simple_repeat 1 51 0 192 349 75 0 chr4 20659974 20660080 -181668267 - MIR SINE MIR -34 228 115 266 316 76 0 chr4 20660815 20660894 -181667453 - L2 LINE L2 -52 3220 3136 409 295 91 54 chr4 20661767 20662008 -181666339 + MIR SINE MIR 13 262 0 5071 181 26 8 chr4 20662638 20664342 -181664005 + L1PB4 LINE L1 4415 6152 -4 286 274 80 35 chr4 20665193 20665306 -181663041 - MIR SINE MIR -41 221 104 1749 181 62 41 chr4 20665326 20665745 -181662602 + MLT2C2 LTR ERVL 5 432 -32 1898 152 3 14 chr4 20666500 20666797 -181661550 - AluJb SINE Alu -18 294 1 235 289 10 10 chr4 20666848 20666945 -181661402 + MLT1J1 LTR MaLR 346 442 -4 1650 97 0 4 chr4 20667518 20667744 -181660603 - AluY SINE Alu -5 306 82 2312 201 10 0 chr4 20667785 20668192 -181660155 + MSTB LTR MaLR 3 413 -13 1995 130 20 0 chr4 20669030 20669330 -181659017 + AluSx SINE Alu 7 312 0 29 47 0 0 chr4 20669667 20669710 -181658637 + AT_rich Low_complexity Low_complexity 1 43 0 31 44 0 0 chr4 20670193 20670238 -181658109 + AT_rich Low_complexity Low_complexity 1 45 0 229 288 30 0 chr4 20670554 20670620 -181657727 - MIR SINE MIR -38 224 157 1715 251 31 46 chr4 20670629 20671091 -181657256 - MLT1E LTR MaLR -3 590 134 2504 108 78 8 chr4 20671091 20671491 -181656856 - MSTA LTR MaLR 0 428 1 1715 251 31 46 chr4 20671491 20671507 -181656840 - MLT1E LTR MaLR -459 134 119 393 304 9 0 chr4 20671508 20671620 -181656727 - MLT1E LTR MaLR -430 163 51 573 308 7 0 chr4 20671656 20671802 -181656545 - MIR SINE MIR -106 156 10 273 346 48 86 chr4 20671853 20672168 -181656179 - L2 LINE L2 -17 3255 2953 261 364 23 0 chr4 20672424 20672512 -181655835 - L2 LINE L2 -652 2662 2573 1943 162 126 5 chr4 20672689 20673071 -181655276 - MSTA LTR MaLR 0 428 1 4599 163 28 9 chr4 20673071 20673862 -181654485 - MSTA-int LTR MaLR 0 1580 775 262 161 128 0 chr4 20673864 20673926 -181654421 - AluS SINE Alu -246 57 1 1688 180 131 13 chr4 20673935 20674318 -181654029 - MSTA LTR MaLR 0 428 1 6754 61 5 6 chr4 20674517 20676193 -181652154 + L1PA7 LINE L1 4493 6167 0 1339 244 148 23 chr4 20676658 20677097 -181651250 + MLT1D LTR MaLR 12 505 0 387 355 65 18 chr4 20677115 20677284 -181651063 - MER91A DNA MER1_type -19 177 1 21 36 0 0 chr4 20677783 20677811 -181650536 + AT_rich Low_complexity Low_complexity 1 28 0 208 272 256 24 chr4 20678363 20678488 -181649859 + MIR SINE MIR 107 260 -2 215 374 10 10 chr4 20678721 20678820 -181649527 + MIR SINE MIR 54 152 -110 189 321 90 8 chr4 20678857 20678991 -181649356 - MIR SINE MIR 0 262 118 296 318 24 38 chr4 20679537 20679702 -181648645 + MIR SINE MIR 27 187 -62 315 287 23 23 chr4 20679983 20680070 -181648277 - L2 LINE L2 -16 3256 3170 26 0 0 0 chr4 20680415 20680441 -181647906 + AT_rich Low_complexity Low_complexity 1 26 0 2019 106 0 7 chr4 20680499 20680954 -181647393 + AluSc SINE Alu 1 453 0 26 50 0 0 chr4 20681356 20681396 -181646951 + AT_rich Low_complexity Low_complexity 1 40 0 13308 195 16 12 chr4 20681397 20686123 -181642224 - L1PA14 LINE L1 -2 7597 2868 759 103 9 0 chr4 20686128 20686235 -181642112 - AluSx SINE Alu -11 299 192 1024 101 0 7 chr4 20686236 20686375 -181641972 - AluSx SINE Alu -171 141 4 3456 118 77 2 chr4 20686379 20686936 -181641411 - L1PA14 LINE L1 -4725 2856 2258 351 261 65 11 chr4 20687424 20687516 -181640831 + MIR SINE MIR 89 185 -77 410 304 47 26 chr4 20687751 20687942 -181640405 + L2 LINE L2 3117 3311 -2 1187 199 109 55 chr4 20689232 20689689 -181638658 - LTR54B LTR ERV1 -16 482 1 27 49 0 0 chr4 20689837 20689878 -181638469 + AT_rich Low_complexity Low_complexity 1 41 0 2731 13 0 0 chr4 20690332 20690635 -181637712 + AluYa5 SINE Alu 1 303 -8 203 378 77 35 chr4 20691160 20691303 -181637044 - L2 LINE L2 -2 3270 3122 820 268 63 26 chr4 20694362 20694713 -181633634 + L1ME2 LINE L1 5757 6120 -44 507 240 12 18 chr4 20694746 20694917 -181633430 + L1MC4a LINE L1 6345 6514 -1294 524 150 0 10 chr4 20694922 20695022 -181633325 + (CA)n Simple_repeat Simple_repeat 2 100 0 255 267 85 34 chr4 20695039 20695176 -181633171 + L1MC4a LINE L1 6537 6593 -1215 21 36 0 0 chr4 20695177 20695205 -181633142 + AT_rich Low_complexity Low_complexity 1 28 0 1975 261 196 15 chr4 20695276 20696192 -181632155 + L1MC4 LINE L1 6658 7739 -303 652 292 12 0 chr4 20696217 20696385 -181631962 - MER58A DNA MER1_type -13 211 42 2555 248 105 51 chr4 20696419 20696978 -181631369 - L1MCb LINE L1 -4085 2479 1952 1811 188 17 12 chr4 20696978 20697323 -181631024 - MER7A DNA MER2_type 0 346 2 2555 248 105 51 chr4 20697323 20698939 -181629408 - L1MCb LINE L1 -4612 1952 129 180 316 95 11 chr4 20698965 20699060 -181629287 + L3 LINE CR1 1461 1563 -14 226 323 0 11 chr4 20699462 20699555 -181628792 + T-rich Low_complexity Low_complexity 2 93 0 2041 131 60 20 chr4 20699561 20699911 -181628436 + THE1B LTR MaLR 1 364 0 205 296 29 93 chr4 20700777 20700949 -181627398 - L2 LINE L2 -829 2485 2325 926 100 87 0 chr4 20701085 20701235 -181627112 - L1P LINE L1 -3113 3033 2871 326 109 0 0 chr4 20701256 20701302 -181627045 + L1P LINE L1 2819 2864 -3282 22 0 0 0 chr4 20701392 20701414 -181626933 + AT_rich Low_complexity Low_complexity 1 22 0 222 338 150 10 chr4 20702035 20702242 -181626105 + L2 LINE L2 1710 1945 -1369 235 319 116 65 chr4 20702271 20702487 -181625860 + MLT1L LTR MaLR 18 244 -371 2627 149 12 14 chr4 20702670 20703099 -181625248 + MSTA LTR MaLR 1 428 0 202 436 39 8 chr4 20703289 20703546 -181624801 + L2 LINE L2 2854 3118 -154 325 341 29 29 chr4 20703996 20704204 -181624143 + L1M4 LINE L1 4626 4833 -1313 275 246 0 0 chr4 20704210 20704275 -181624072 + (TA)n Simple_repeat Simple_repeat 1 65 0 29 28 0 0 chr4 20704380 20704416 -181623931 + AT_rich Low_complexity Low_complexity 1 36 0 420 297 78 60 chr4 20704718 20704950 -181623397 + MIR SINE MIR 5 240 -22 2287 81 7 3 chr4 20705387 20705682 -181622665 + AluY SINE Alu 1 296 -15 1745 161 73 14 chr4 20705800 20706154 -181622193 + THE1C LTR MaLR 1 375 0 21 71 0 0 chr4 20706514 20706556 -181621791 + AT_rich Low_complexity Low_complexity 1 42 0 25 65 0 0 chr4 20707055 20707101 -181621246 + AT_rich Low_complexity Low_complexity 1 46 0 1605 296 57 29 chr4 20708712 20709273 -181619074 + MLT1E LTR MaLR 3 579 -14 288 364 23 23 chr4 20709642 20709771 -181618576 + Charlie8 DNA MER1_type 152 280 -2137 299 277 158 103 chr4 20710241 20710660 -181617687 - MLT1H LTR MaLR -107 442 1 361 316 21 0 chr4 20711974 20712069 -181616278 - MIR SINE MIR -62 146 50 23 54 0 0 chr4 20712258 20712295 -181616052 + AT_rich Low_complexity Low_complexity 1 37 0 264 268 24 12 chr4 20712762 20712844 -181615503 + L1MC4 LINE L1 7325 7407 -635 2281 152 8 0 chr4 20712844 20713205 -181615142 - THE1B LTR MaLR 0 364 1 246 62 0 0 chr4 20713354 20713386 -181614961 + (TA)n Simple_repeat Simple_repeat 2 33 0 413 289 26 26 chr4 20713386 20713576 -181614771 + L1MC4 LINE L1 7698 7887 -155 648 260 35 111 chr4 20713775 20713880 -181614467 + L1MC5 LINE L1 6617 6728 -1233 2108 125 0 0 chr4 20713880 20714177 -181614170 - AluSc SINE Alu -7 302 6 648 260 35 111 chr4 20714177 20714529 -181613818 + L1MC5 LINE L1 6728 7039 -922 4801 232 66 38 chr4 20714533 20717520 -181610827 + L1MD1 LINE L1 3175 6242 0 1615 187 21 9 chr4 20717523 20717849 -181610498 + L1MC1 LINE L1 6004 6333 0 242 368 17 8 chr4 20718320 20718437 -181609910 - L2 LINE L2 -16 3256 3139 313 293 144 29 chr4 20719391 20719565 -181608782 - MLT1I LTR MaLR -123 286 93 10676 162 24 13 chr4 20720001 20721911 -181606436 + Tigger1 DNA MER2_type 1 1932 -486 367 133 0 0 chr4 20721945 20722005 -181606342 + Tigger1 DNA MER2_type 2113 2172 -246 587 163 10 0 chr4 20722005 20722103 -181606244 + Tigger1 DNA MER2_type 2320 2418 0 3884 258 70 37 chr4 20722393 20722903 -181605444 + L1MB8 LINE L1 3497 3989 -2189 1918 114 34 20 chr4 20722903 20723201 -181605146 - AluSx SINE Alu 0 312 11 3884 258 70 37 chr4 20723201 20725288 -181603059 + L1MB8 LINE L1 3989 6178 0 255 304 101 40 chr4 20725420 20725568 -181602779 - MIR3 SINE MIR -12 196 40 225 397 26 17 chr4 20726673 20726789 -181601558 + MIR SINE MIR 32 148 -114 1906 127 3 48 chr4 20727018 20727333 -181601014 + AluSc SINE Alu 1 301 -8 536 341 45 8 chr4 20727503 20727749 -181600598 - MIR SINE MIR -1 261 7 21 0 0 0 chr4 20730228 20730249 -181598098 + AT_rich Low_complexity Low_complexity 1 21 0 191 302 47 66 chr4 20730443 20730549 -181597798 - MER5B DNA MER1_type -72 106 3 1904 98 26 4 chr4 20730671 20730935 -181597412 + AluSp SINE Alu 14 283 -30 681 288 75 12 chr4 20731081 20731321 -181597026 - MIR SINE MIR -6 256 2 2202 168 71 24 chr4 20731518 20731988 -181596359 + MLT2A2 LTR ERVL 1 447 -107 405 0 0 0 chr4 20731988 20732033 -181596314 + (TG)n Simple_repeat Simple_repeat 2 46 0 279 0 0 0 chr4 20732032 20732063 -181596284 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 2202 168 71 24 chr4 20732033 20732101 -181596246 + MLT2A2 LTR ERVL 447 554 0 202 361 67 0 chr4 20732410 20732529 -181595818 + L2 LINE L2 3146 3272 0 332 230 0 70 chr4 20733236 20733387 -181594960 - MIR SINE MIR -71 191 16 1398 250 32 20 chr4 20734693 20735101 -181593246 + LTR52 LTR ERVL 4 416 -5 4397 180 15 15 chr4 20735150 20736013 -181592334 + MER6 DNA MER2_type 1 863 -2 260 353 60 37 chr4 20736366 20736666 -181591681 + L2 LINE L2 673 979 -2335 336 332 91 85 chr4 20737884 20738530 -181589817 + L2 LINE L2 2609 3264 -8 223 295 114 9 chr4 20738615 20738720 -181589627 + MIR3 SINE MIR 82 197 -11 528 297 26 31 chr4 20739255 20739447 -181588900 + MIR SINE MIR 15 205 -57 390 333 98 0 chr4 20739728 20739851 -181588496 - L2 LINE L2 -4 3268 3134 265 111 0 0 chr4 20739901 20739937 -181588410 - U2 snRNA snRNA -152 36 1 1140 322 94 13 chr4 20740622 20741433 -181586914 - L2 LINE L2 -2 3311 2448 180 381 124 9 chr4 20742403 20742508 -181585839 + MIR3 SINE MIR 43 159 -49 21 0 0 0 chr4 20742637 20742658 -181585689 + AT_rich Low_complexity Low_complexity 1 21 0 438 20 0 0 chr4 20742737 20742788 -181585559 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 2041 147 42 20 chr4 20743594 20743948 -181584399 - THE1B LTR MaLR -2 362 1 25 65 0 0 chr4 20744721 20744767 -181583580 + AT_rich Low_complexity Low_complexity 1 46 0 433 300 85 39 chr4 20745036 20745319 -181583028 + L1MA9 LINE L1 5966 6261 -30 21 0 0 0 chr4 20745363 20745384 -181582963 + AT_rich Low_complexity Low_complexity 1 21 0 478 314 8 0 chr4 20745423 20745547 -181582800 - L2 LINE L2 -1 3312 3188 260 314 84 52 chr4 20745648 20745839 -181582508 - L2 LINE L2 -133 3180 2984 271 273 23 0 chr4 20745924 20746012 -181582335 + GA-rich Low_complexity Low_complexity 5 94 0 287 274 66 28 chr4 20746087 20746193 -181582154 + MLT1H1 LTR MaLR 446 555 0 341 297 88 0 chr4 20746296 20746444 -181581903 + MIR SINE MIR 74 234 -28 2353 254 36 36 chr4 20746629 20747365 -181580982 + L1M2 LINE L1 1177 1918 -4931 2058 122 6 6 chr4 20747365 20747677 -181580670 + AluSx SINE Alu 1 312 0 2353 254 36 36 chr4 20747677 20747813 -181580534 + L1M2 LINE L1 1918 2052 -4797 1658 211 6 0 chr4 20747794 20748154 -181580193 + L1M2 LINE L1 2513 2874 -3975 * 30 0 0 0 chr4 20749867 20749897 -181578450 + AT_rich Low_complexity Low_complexity 1 30 0 2309 123 123 5 chr4 20751487 20751870 -181576477 + MSTA LTR MaLR 1 428 0 200 189 0 38 chr4 20751974 20751989 -181576358 + A-rich Low_complexity Low_complexity 5 55 0 2187 78 35 0 chr4 20751989 20752310 -181576037 + AluY SINE Alu 1 331 0 24 32 0 0 chr4 20753727 20753758 -181574589 + AT_rich Low_complexity Low_complexity 1 31 0 307 206 0 22 chr4 20753965 20754057 -181574290 + (TA)n Simple_repeat Simple_repeat 2 91 0 770 253 52 13 chr4 20754849 20755082 -181573265 - MIR SINE MIR 0 262 21 236 294 73 0 chr4 20756077 20756145 -181572202 + MIR SINE MIR 3 75 -187 1122 214 49 106 chr4 20756157 20756648 -181571699 - MER39 LTR ERV1 -2 705 243 259 241 276 0 chr4 20756620 20756707 -181571640 - MER34 LTR ERV1 -431 111 1 * 183 286 0 24 chr4 20756707 20756749 -181571598 + L2 LINE L2 3199 3239 -33 2132 93 0 7 chr4 20757178 20757458 -181570889 + AluY SINE Alu 20 297 -14 234 287 23 93 chr4 20758089 20758218 -181570129 + MIR SINE MIR 117 236 -26 251 296 12 12 chr4 20758282 20758363 -181569984 + Charlie1 DNA MER1_type 2 82 -2679 1056 138 110 0 chr4 20758381 20758603 -181569744 + L1MB2 LINE L1 5729 5976 -195 2378 162 91 29 chr4 20758663 20759189 -181569158 - MER34B LTR ERV1 -6 559 1 418 204 31 130 chr4 20759189 20759240 -181569107 - MLT1B LTR MaLR -26 364 308 1959 126 0 63 chr4 20759240 20759574 -181568773 - AluSq SINE Alu 0 313 1 418 204 31 130 chr4 20759574 20759673 -181568674 - MLT1B LTR MaLR -82 308 230 754 222 72 25 chr4 20759817 20759951 -181568396 + Charlie1 DNA MER1_type 2465 2591 -170 472 24 61 0 chr4 20759951 20760033 -181568314 + (TA)n Simple_repeat Simple_repeat 2 88 0 2330 81 3 0 chr4 20760034 20760330 -181568017 - AluY SINE Alu -14 297 1 754 222 72 25 chr4 20760330 20760472 -181567875 + Charlie1 DNA MER1_type 2590 2756 -5 645 197 7 7 chr4 20760695 20760847 -181567500 + MER53 DNA DNA 38 189 0 256 259 0 0 chr4 20761245 20761303 -181567044 - MER94 DNA DNA -2 132 75 22 0 0 0 chr4 20761526 20761548 -181566799 + AT_rich Low_complexity Low_complexity 1 22 0 299 289 18 0 chr4 20761829 20761943 -181566404 + MER20B DNA MER1_type 667 782 -1 563 268 21 0 chr4 20761990 20762132 -181566215 - MIR SINE MIR -21 241 97 259 160 0 20 chr4 20762187 20762237 -181566110 - L2 LINE L2 0 3313 3265 217 339 58 37 chr4 20762242 20762484 -181565863 + L2 LINE L2 1230 1476 -1838 762 203 140 0 chr4 20762694 20762916 -181565431 + MER33 DNA MER1_type 5 257 -67 2860 214 65 3 chr4 20762935 20763608 -181564739 - L1MB2 LINE L1 -10 6161 5447 281 318 17 29 chr4 20763662 20763835 -181564512 - HAL1 LINE L1 -952 1555 1385 1146 343 147 23 chr4 20763842 20765112 -181563235 + L2 LINE L2 1869 3309 -4 429 293 55 114 chr4 20766021 20766563 -181561784 - L2 LINE L2 0 3313 2804 21 36 0 0 chr4 20767228 20767256 -181561091 + AT_rich Low_complexity Low_complexity 1 28 0 230 380 50 0 chr4 20767445 20767545 -181560802 - L3 LINE CR1 -454 1123 1019 2087 100 55 0 chr4 20767659 20767949 -181560398 - AluSp SINE Alu -7 306 1 627 285 47 5 chr4 20769034 20769248 -181559099 + L3b LINE CR1 1226 1448 -135 187 394 64 0 chr4 20769455 20769549 -181558798 + MIR SINE MIR 5 104 -158 365 233 133 25 chr4 20769699 20769819 -181558528 - MIR SINE MIR -56 206 74 624 286 5 10 chr4 20770464 20770667 -181557680 - MER105 DNA DNA -2 202 1 215 169 39 13 chr4 20771271 20771348 -181556999 + (TA)n Simple_repeat Simple_repeat 2 80 0 2394 81 0 0 chr4 20772193 20772489 -181555858 + AluSc SINE Alu 1 296 -13 291 85 0 0 chr4 20772489 20772536 -181555811 + (TA)n Simple_repeat Simple_repeat 2 48 0 369 0 0 0 chr4 20772758 20772799 -181555548 + (TA)n Simple_repeat Simple_repeat 1 41 0 1488 211 195 10 chr4 20773748 20773934 -181554413 + MLT1C LTR MaLR 1 151 -316 297 0 0 0 chr4 20773934 20773967 -181554380 + (CA)n Simple_repeat Simple_repeat 2 34 0 1488 211 195 10 chr4 20773967 20774135 -181554212 + MLT1C LTR MaLR 151 287 -180 18071 28 1 0 chr4 20774135 20777058 -181551289 - L1PA2 LINE L1 0 6155 3232 1488 211 195 10 chr4 20777058 20777096 -181551251 + MLT1C LTR MaLR 287 467 0 294 261 45 27 chr4 20777306 20777417 -181550930 - L3 LINE CR1 -86 1491 1379 4967 163 51 12 chr4 20777614 20779148 -181549199 - L1MA5 LINE L1 -54 6246 4666 2411 244 59 23 chr4 20779343 20780305 -181548042 + L1 LINE L1 2387 3383 -2763 2597 189 68 41 chr4 20780305 20781013 -181547334 + L1 LINE L1 3910 4636 -1510 410 365 90 28 chr4 20781250 20781748 -181546599 - L2 LINE L2 -346 2968 2440 424 256 8 25 chr4 20781993 20782114 -181546233 - MLT1H LTR MaLR -306 243 125 944 231 63 72 chr4 20782914 20783277 -181545070 + MLT1D LTR MaLR 1 360 -145 29328 33 5 1 chr4 20783277 20787672 -181540675 + L1PA3 LINE L1 1741 6155 0 804 188 7 0 chr4 20787676 20787825 -181540522 + MLT1D LTR MaLR 353 502 -3 23 0 0 0 chr4 20787939 20787962 -181540385 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr4 20788055 20788094 -181540253 + AT_rich Low_complexity Low_complexity 1 39 0 82 44 0 7 chr4 20788259 20788310 -181540037 + AT_rich Low_complexity Low_complexity 1 51 -83 180 0 0 0 chr4 20788310 20788330 -181540017 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 82 44 0 7 chr4 20788330 20788413 -181539934 + AT_rich Low_complexity Low_complexity 51 134 0 222 267 27 13 chr4 20790666 20790741 -181537606 - MER5A DNA MER1_type -1 188 113 184 218 13 26 chr4 20790929 20791007 -181537340 + GA-rich Low_complexity Low_complexity 1 77 0 487 301 48 5 chr4 20791204 20791390 -181536957 + MIR SINE MIR 44 237 -25 433 312 38 0 chr4 20791386 20791543 -181536804 + L2 LINE L2 2708 2870 -444 * 1274 169 16 4 chr4 20791712 20791961 -181536386 - L1PA16 LINE L1 -156 6010 5759 306 175 0 0 chr4 20791959 20792016 -181536331 + L1P4 LINE L1 5666 5722 -444 * 1065 215 79 21 chr4 20792917 20793257 -181535090 + L1MB7 LINE L1 5823 6182 -2 26 30 0 0 chr4 20793293 20793326 -181535021 + AT_rich Low_complexity Low_complexity 1 33 0 206 359 76 89 chr4 20793977 20794370 -181533977 - L2 LINE L2 -45 3227 2840 278 412 38 0 chr4 20794704 20794835 -181533512 - L2 LINE L2 0 3272 3137 1987 121 10 0 chr4 20795443 20795732 -181532615 + AluSx SINE Alu 1 292 -20 22 35 0 0 chr4 20796729 20796758 -181531589 + AT_rich Low_complexity Low_complexity 1 29 0 457 143 31 10 chr4 20796968 20797066 -181531281 + GA-rich Low_complexity Low_complexity 3 102 0 270 0 0 0 chr4 20797066 20797096 -181531251 + (TG)n Simple_repeat Simple_repeat 2 31 0 243 0 0 0 chr4 20797098 20797125 -181531222 + (GA)n Simple_repeat Simple_repeat 2 28 0 396 332 62 14 chr4 20797371 20797582 -181530765 + MLT1I LTR MaLR 1 221 -188 410 236 94 31 chr4 20798251 20798378 -181529969 + L2 LINE L2 3179 3313 0 363 23 0 0 chr4 20798427 20798471 -181529876 + (CA)n Simple_repeat Simple_repeat 2 45 0 264 114 0 23 chr4 20798536 20798580 -181529767 - MADE1 DNA Mariner -37 43 1 464 357 51 0 chr4 20799888 20800084 -181528263 - MIR SINE MIR 0 262 57 386 269 48 35 chr4 20800206 20800351 -181527996 - MIR SINE MIR -32 230 84 390 169 0 0 chr4 20800565 20800636 -181527711 - L1PA16 LINE L1 -3 6163 6093 11503 104 13 2 chr4 20800761 20801193 -181527154 + L1P LINE L1 3072 3498 -2648 216 0 0 0 chr4 20801193 20801217 -181527130 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 11503 104 13 2 chr4 20801217 20802519 -181525828 + L1P LINE L1 3498 4826 -1320 180 85 106 64 chr4 20802776 20802823 -181525524 - L3b LINE CR1 -330 1253 1205 522 214 71 0 chr4 20802837 20802963 -181525384 - MER5A DNA MER1_type -3 186 52 6899 130 104 1 chr4 20803091 20804211 -181524136 - THE1B-int LTR MaLR -344 1236 1 2343 116 55 0 chr4 20804211 20804556 -181523791 - THE1B LTR MaLR 0 364 1 646 215 67 99 chr4 20804556 20804840 -181523507 + L1MC4 LINE L1 7403 7677 -365 276 30 0 0 chr4 20804880 20804913 -181523434 + (TA)n Simple_repeat Simple_repeat 2 34 0 467 269 70 78 chr4 20905149 20905420 -181422927 - HAL1b LINE L1 -1014 334 66 21 0 0 0 chr4 20905781 20905802 -181422545 + AT_rich Low_complexity Low_complexity 1 21 0 220 208 0 0 chr4 20906216 20906269 -181422078 + T-rich Low_complexity Low_complexity 1 53 0 793 274 56 94 chr4 20907344 20907847 -181420500 - MER102b DNA MER1_type -43 298 29 924 167 9 71 chr4 20907953 20908226 -181420121 - L1M LINE L1 -745 5401 5161 1358 229 8 11 chr4 20908556 20908909 -181419438 + L1M4 LINE L1 4918 5269 -877 931 256 0 31 chr4 20908910 20909137 -181419210 + Tigger5 DNA MER2_type 1 220 -2103 3685 47 0 8 chr4 20909239 20909711 -181418636 - L1P LINE L1 -893 5253 4786 6713 28 1 0 chr4 20909711 20910504 -181417843 + L1P LINE L1 3992 4785 -1361 259 281 0 0 chr4 20910546 20910610 -181417737 + MIR SINE MIR 164 227 -35 23 40 0 0 chr4 20910818 20910843 -181417504 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr4 20910868 20910888 -181417459 + (T)n Simple_repeat Simple_repeat 1 20 0 810 284 4 6 chr4 20911441 20911677 -181416670 + MIR SINE MIR 30 262 0 207 309 72 42 chr4 20911730 20911966 -181416381 - L2 LINE L2 -220 3052 2810 5522 115 11 23 chr4 20912486 20912904 -181415443 + L1PA13 LINE L1 5229 5650 -513 1625 153 97 31 chr4 20912904 20913256 -181415091 - THE1C LTR MaLR 0 375 1 5522 115 11 23 chr4 20913256 20913783 -181414564 + L1PA13 LINE L1 5650 6163 0 459 266 22 0 chr4 20913964 20914103 -181414244 + L1MA8 LINE L1 6140 6281 -10 201 341 62 47 chr4 20914213 20914342 -181414005 - MIR3 SINE MIR -69 139 9 215 360 100 34 chr4 20915161 20915400 -181412947 + L3b LINE CR1 1108 1362 -221 2427 73 0 19 chr4 20916908 20917225 -181411122 + AluY SINE Alu 1 311 0 308 261 93 20 chr4 20917616 20917911 -181410436 + L1M4c LINE L1 1031 1354 -5030 14605 28 0 0 chr4 20918433 20920304 -181408043 - L1P1 LINE L1 -636 5519 3649 873 119 0 35 chr4 20920304 20920447 -181407900 - AluJb SINE Alu -174 138 1 347 357 42 65 chr4 20920587 20920940 -181407407 + L2 LINE L2 2888 3232 -40 228 282 14 14 chr4 20920998 20921069 -181407278 - Zaphod DNA AcHobo 0 4031 3961 2860 3 0 3 chr4 20921069 20921381 -181406966 + AluYa5 SINE Alu 1 311 0 1907 189 31 3 chr4 20922562 20922917 -181405430 - MLT1A1 LTR MaLR 0 365 1 1869 130 25 7 chr4 20923797 20924082 -181404265 + AluSg SINE Alu 21 310 0 21 36 0 0 chr4 20924386 20924414 -181403933 + AT_rich Low_complexity Low_complexity 1 28 0 1044 238 102 0 chr4 20924948 20925242 -181403105 - L1MA9 LINE L1 -39 6273 5950 254 194 194 0 chr4 20925458 20925525 -181402822 - MER65A LTR ERV1 -365 80 1 244 230 11 92 chr4 20925953 20926040 -181402307 - MIR SINE MIR -1 261 182 1781 171 0 23 chr4 20926044 20926230 -181402117 - AluJb SINE Alu -20 292 114 2469 122 14 3 chr4 20926230 20926590 -181401757 - THE1B LTR MaLR 0 364 1 1781 171 0 23 chr4 20926590 20926702 -181401645 - AluJb SINE Alu -198 114 1 1999 119 9 41 chr4 20926704 20927024 -181401323 - AluSx SINE Alu -2 310 1 331 264 11 11 chr4 20927263 20927350 -181400997 + L2 LINE L2 3184 3270 -2 21 57 0 0 chr4 20928039 20928074 -181400273 + AT_rich Low_complexity Low_complexity 1 35 0 1994 135 26 34 chr4 20928209 20928587 -181399760 + THE1C LTR MaLR 1 375 0 188 317 85 24 chr4 20928588 20928670 -181399677 + MIR SINE MIR 1 87 -175 7093 32 2 0 chr4 20928730 20929576 -181398771 - L1PA4 LINE L1 0 6155 5308 247 196 22 0 chr4 20929676 20929722 -181398625 + Tigger5 DNA MER2_type 2276 2322 -1 5073 183 24 19 chr4 20929727 20930770 -181397577 + L1MC1 LINE L1 5273 6320 -13 316 291 11 116 chr4 20931835 20931982 -181396365 + MER5B DNA MER1_type 4 128 -50 216 0 0 0 chr4 20931982 20932006 -181396341 + (GA)n Simple_repeat Simple_repeat 1 24 0 316 291 11 116 chr4 20932006 20932047 -181396300 + MER5B DNA MER1_type 128 172 -6 213 309 0 0 chr4 20932226 20932281 -181396066 + MER5A DNA MER1_type 135 189 0 310 303 73 9 chr4 20932365 20932474 -181395873 - L2 LINE L2 -1 3271 3156 244 316 20 31 chr4 20932964 20933062 -181395285 + L2 LINE L2 3199 3295 -18 224 349 47 9 chr4 20933099 20933205 -181395142 - L2 LINE L2 -1302 2012 1903 2022 105 26 36 chr4 20933283 20933587 -181394760 + AluY SINE Alu 1 301 -10 278 340 19 39 chr4 20934843 20934999 -181393348 + MLT1K LTR MaLR 27 179 -409 1388 206 55 70 chr4 20935010 20935393 -181392954 - MER82 DNA MER2_type 0 653 277 3348 20 10 0 chr4 20935496 20935890 -181392457 + L1PA3 LINE L1 5758 6155 0 1139 149 0 17 chr4 20935891 20936066 -181392281 + AluJb SINE Alu 129 300 -12 339 113 0 0 chr4 20936082 20936135 -181392212 + (GGGGA)n Simple_repeat Simple_repeat 5 57 0 537 327 15 29 chr4 20936185 20936390 -181391957 - MIR SINE MIR -29 233 32 205 143 0 41 chr4 20936417 20936466 -181391881 + (TTATA)n Simple_repeat Simple_repeat 1 47 0 47 53 0 0 chr4 20936485 20936560 -181391787 + AT_rich Low_complexity Low_complexity 1 75 0 370 313 163 0 chr4 20936560 20936741 -181391606 - MIR SINE MIR -15 247 39 180 0 0 0 chr4 20937370 20937390 -181390957 + (TTG)n Simple_repeat Simple_repeat 2 21 0 262 335 42 38 chr4 20937666 20937902 -181390445 - MIR SINE MIR -1 261 25 26 64 0 0 chr4 20937909 20937956 -181390391 + AT_rich Low_complexity Low_complexity 1 47 0 29 28 0 0 chr4 20938079 20938115 -181390232 + AT_rich Low_complexity Low_complexity 1 36 0 450 320 171 0 chr4 20938624 20938805 -181389542 + L3 LINE CR1 609 820 -757 261 370 46 0 chr4 20938860 20938968 -181389379 + L3 LINE CR1 1011 1123 -454 3347 115 8 14 chr4 20939410 20939924 -181388423 - MER9 LTR ERVK 0 511 1 1463 238 106 64 chr4 20940442 20941284 -181387063 - L1MC5 LINE L1 -435 7526 6650 498 227 46 8 chr4 20941930 20942075 -181386272 + MLT1C LTR MaLR 1 150 -355 769 253 91 32 chr4 20942580 20942888 -181385459 + MLT1C LTR MaLR 138 463 -4 391 273 0 27 chr4 20943314 20943424 -181384923 + MIR SINE MIR 9 115 -147 1013 208 5 14 chr4 20944231 20944447 -181383900 + MER20 DNA MER1_type 3 216 -3 3334 198 16 6 chr4 20944507 20945210 -181383137 + L1P LINE L1 4555 5264 -882 1385 222 30 6 chr4 20946287 20946621 -181381726 - L1MB3 LINE L1 -255 5928 5587 1040 158 24 57 chr4 20946644 20946890 -181381457 - L1MA4A LINE L1 -13 6290 6053 3782 150 36 15 chr4 20946920 20947366 -181380981 - L1MA4A LINE L1 -215 6088 5620 2047 139 48 17 chr4 20947366 20947719 -181380628 - THE1B LTR MaLR 0 364 1 3782 150 36 15 chr4 20947719 20947985 -181380362 - L1MA4A LINE L1 -683 5620 5361 4205 231 102 31 chr4 20948016 20950068 -181378279 - L1PB4 LINE L1 -1 6155 3745 2111 119 3 0 chr4 20950068 20950361 -181377986 - AluSx SINE Alu -15 297 4 4205 231 102 31 chr4 20950361 20950931 -181377416 - L1PB4 LINE L1 -2411 3745 3217 2154 117 3 0 chr4 20952042 20952349 -181375998 - AluSc SINE Alu -1 308 1 25 0 0 0 chr4 20952357 20952382 -181375965 + AT_rich Low_complexity Low_complexity 1 25 0 1813 126 7 11 chr4 20954053 20954330 -181374017 - AluSx SINE Alu -7 305 30 488 293 84 29 chr4 20954674 20954913 -181373434 + MLT1I LTR MaLR 156 407 -2 746 340 135 15 chr4 20954930 20955597 -181372750 + L2 LINE L2 1327 2073 -1241 250 250 47 0 chr4 20955624 20955688 -181372659 + L2 LINE L2 3247 3313 0 249 33 0 0 chr4 20955929 20955959 -181372388 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 552 318 62 49 chr4 20955965 20956352 -181371995 - L3 LINE CR1 -630 947 556 30 27 0 0 chr4 20956429 20956466 -181371881 + AT_rich Low_complexity Low_complexity 1 37 0 4697 62 11 2 chr4 20956637 20957277 -181371070 + L1PA8 LINE L1 5541 6186 0 189 308 0 0 chr4 20957977 20958029 -181370318 + L2 LINE L2 3262 3313 0 285 340 57 21 chr4 20958786 20958960 -181369387 + MIR SINE MIR 9 181 -63 22 0 0 0 chr4 20959647 20959669 -181368678 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 20959684 20959705 -181368642 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 20959857 20959880 -181368467 + AT_rich Low_complexity Low_complexity 1 23 0 242 304 171 32 chr4 20960209 20960367 -181367980 - MIR3 SINE MIR -13 195 16 253 337 63 34 chr4 20960375 20960550 -181367797 - MIR3 SINE MIR -10 198 19 2544 58 0 6 chr4 20961271 20961584 -181366763 - AluY SINE Alu 0 311 1 668 334 33 66 chr4 20962181 20962723 -181365624 + L2 LINE L2 2779 3312 -1 229 246 0 0 chr4 20962724 20962746 -181365601 + (TGAA)n Simple_repeat Simple_repeat 2 23 -35 2016 125 0 14 chr4 20962746 20963041 -181365306 + AluSx SINE Alu 1 291 -21 229 246 0 0 chr4 20963041 20963075 -181365272 + (TGAA)n Simple_repeat Simple_repeat 22 58 0 288 136 0 0 chr4 20964317 20964361 -181363986 + L1MA4 LINE L1 6185 6228 -72 1900 233 48 33 chr4 20964465 20965101 -181363246 - L1 LINE L1 -3322 3526 2878 28 48 0 0 chr4 20965101 20965143 -181363204 + AT_rich Low_complexity Low_complexity 1 42 0 12824 209 66 11 chr4 20965148 20967878 -181360469 - L1 LINE L1 -3971 2878 1 22 35 0 0 chr4 20968358 20968387 -181359960 + AT_rich Low_complexity Low_complexity 1 29 0 1963 141 7 23 chr4 20969001 20969307 -181359040 - AluSq SINE Alu -12 301 1 414 0 0 0 chr4 20970201 20970247 -181358100 + (TA)n Simple_repeat Simple_repeat 1 46 0 9054 32 11 0 chr4 20970251 20972105 -181356242 - L1PA4 LINE L1 -5 6150 4284 2043 205 35 6 chr4 20972105 20972586 -181355761 - L1MC2 LINE L1 -16 6328 5823 212 0 36 0 chr4 20972931 20972959 -181355388 + (TC)n Simple_repeat Simple_repeat 2 30 0 776 309 75 75 chr4 20973062 20973437 -181354910 + LTR16C LTR ERVL 113 487 -4 219 359 38 50 chr4 20975692 20975851 -181352496 - L2 LINE L2 -31 3241 3085 306 272 142 24 chr4 20975999 20976139 -181352208 - MER58B DNA MER1_type -1 340 180 322 291 80 34 chr4 20976741 20976916 -181351431 + L2 LINE L2 3116 3298 -15 3801 24 0 0 chr4 20977044 20977500 -181350847 - L1PA3 LINE L1 -794 5352 4897 7114 19 1 0 chr4 20977500 20978321 -181350026 + L1PA3 LINE L1 5331 6155 0 244 268 72 0 chr4 20978618 20978715 -181349632 - L1MC4 LINE L1 -1341 6701 6598 269 275 56 56 chr4 20978912 20979054 -181349293 - L2 LINE L2 -1 3312 3171 275 396 80 0 chr4 20979369 20979556 -181348791 - L2 LINE L2 -612 2702 2501 347 300 7 47 chr4 20980925 20981075 -181347272 - L2 LINE L2 -1 3312 3169 487 282 150 29 chr4 20981077 20981360 -181346987 - L2 LINE L2 -247 3066 2752 856 271 136 71 chr4 20981361 20981879 -181346468 + MLT1G1 LTR MaLR 1 595 0 2766 304 148 36 chr4 20981909 20982090 -181346257 - L2 LINE L2 -600 2714 2555 2091 120 3 0 chr4 20982090 20982389 -181345958 - AluSg SINE Alu -10 300 1 2766 304 148 36 chr4 20982389 20983736 -181344611 - L2 LINE L2 -759 2555 1015 207 0 0 0 chr4 20983776 20983799 -181344548 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 844 181 12 0 chr4 20984619 20984785 -181343562 + L1P LINE L1 4899 5066 -1080 292 236 29 132 chr4 20985088 20985262 -181343085 + L2 LINE L2 2891 3046 -226 268 317 172 40 chr4 20985313 20985540 -181342807 + MIR SINE MIR 6 262 0 21 57 0 0 chr4 20985798 20985833 -181342514 + AT_rich Low_complexity Low_complexity 1 35 0 7017 92 4 3 chr4 20985833 20987622 -181340725 - L1PA7 LINE L1 -3 6151 4366 26 64 0 0 chr4 20987754 20987801 -181340546 + AT_rich Low_complexity Low_complexity 1 47 0 2134 118 0 10 chr4 20988113 20988417 -181339930 + AluSx SINE Alu 5 305 -7 1593 217 31 14 chr4 20989424 20989783 -181338564 + MLT1A1 LTR MaLR 1 365 0 1364 187 83 48 chr4 20990274 20990649 -181337698 + MLT1B LTR MaLR 3 390 0 1339 331 68 25 chr4 20990911 20991482 -181336865 + MER115 DNA AcHobo 90 685 -8 207 157 20 20 chr4 20992080 20992131 -181336216 + (TTATA)n Simple_repeat Simple_repeat 4 54 0 431 149 0 0 chr4 20992494 20992568 -181335779 + L1PB4 LINE L1 6080 6153 -3 1251 245 69 48 chr4 20993214 20993695 -181334652 + MLT1D LTR MaLR 7 497 -8 484 304 20 14 chr4 20993703 20993851 -181334496 + MIR SINE MIR 107 255 -7 1209 220 30 26 chr4 20994238 20994542 -181333805 + MLT1A1 LTR MaLR 61 365 0 1927 34 0 0 chr4 20994594 20994827 -181333520 - L1PA3 LINE L1 0 6155 5923 2886 18 0 0 chr4 20994827 20995157 -181333190 + L1PA3 LINE L1 5567 5896 -259 193 250 183 10 chr4 20995157 20995261 -181333086 + MIR SINE MIR 125 246 -16 439 177 0 0 chr4 20995409 20995488 -181332859 + L1PB4 LINE L1 5897 5975 -181 1639 183 174 11 chr4 20995496 20995857 -181332490 + MSTA LTR MaLR 9 428 0 716 213 11 55 chr4 20995862 20996045 -181332302 + L1PB4 LINE L1 5980 6154 -2 213 339 83 28 chr4 20997948 20998128 -181330219 + MIR SINE MIR 73 262 0 216 86 0 0 chr4 20998948 20998983 -181329364 + (A)n Simple_repeat Simple_repeat 1 35 0 186 43 0 0 chr4 20999268 20999291 -181329056 + (TA)n Simple_repeat Simple_repeat 2 24 0 322 328 144 10 chr4 20999847 21000048 -181328299 + MIR SINE MIR 35 262 0 256 358 113 54 chr4 21000249 21000489 -181327858 - L2 LINE L2 -21 3251 2998 234 298 206 21 chr4 21000488 21000629 -181327718 - MIR3 SINE MIR -18 190 24 * 351 78 0 0 chr4 21001325 21001376 -181326971 + (TG)n Simple_repeat Simple_repeat 1 51 0 371 133 60 0 chr4 21002377 21002460 -181325887 - L1MA7 LINE L1 -3 6288 6201 2180 122 3 3 chr4 21002498 21002809 -181325538 - AluSq SINE Alu 0 313 3 5465 41 3 0 chr4 21003064 21003729 -181324618 - L1PA3 LINE L1 0 6155 5489 351 351 82 34 chr4 21003729 21003937 -181324410 - MIR SINE MIR -42 220 3 195 42 0 0 chr4 21004264 21004288 -181324059 + (TAAAAA)n Simple_repeat Simple_repeat 3 26 0 209 254 56 58 chr4 21004463 21004571 -181323776 + MIR3 SINE MIR 86 203 -5 289 244 71 54 chr4 21004708 21004876 -181323471 - MLT1J1 LTR MaLR 0 446 276 544 231 98 40 chr4 21004917 21005090 -181323257 - MLT1J2 LTR MaLR -261 189 7 645 14 0 0 chr4 21005208 21005282 -181323065 + (TTCC)n Simple_repeat Simple_repeat 4 77 0 294 87 0 0 chr4 21005282 21005328 -181323019 + (TC)n Simple_repeat Simple_repeat 2 47 0 1366 131 0 19 chr4 21005328 21005534 -181322813 - AluSc SINE Alu -37 272 71 464 129 0 0 chr4 21005580 21005650 -181322697 - AluSc SINE Alu -240 70 1 4657 101 5 0 chr4 21005804 21006457 -181321890 - L1PA13 LINE L1 -3 6160 5505 486 274 51 0 chr4 21006471 21006588 -181321759 + L2 LINE L2 3187 3309 -4 1784 159 130 16 chr4 21006659 21007043 -181321304 + MSTA LTR MaLR 1 428 0 892 121 34 0 chr4 21007936 21008085 -181320262 - L1MA4 LINE L1 -8 6292 6139 209 318 12 24 chr4 21008505 21008590 -181319757 - MIR SINE MIR -27 235 152 202 264 19 0 chr4 21008668 21008721 -181319626 + L2 LINE L2 3255 3308 -5 1331 267 94 40 chr4 21008752 21009272 -181319075 - MLT1E LTR MaLR 0 593 46 452 301 19 62 chr4 21010067 21010276 -181318071 + MIR SINE MIR 57 256 -6 212 283 0 0 chr4 21010660 21010713 -181317634 - L2 LINE L2 -1 3271 3219 806 278 48 0 chr4 21010762 21010971 -181317376 - MIR SINE MIR -16 246 28 980 141 19 19 chr4 21011149 21011305 -181317042 + FRAM SINE Alu 1 156 -20 1709 167 43 56 chr4 21011784 21012179 -181316168 - MLT1B LTR MaLR 0 390 1 497 278 158 5 chr4 21012335 21012544 -181315803 - MIR SINE MIR 0 262 22 2154 136 3 0 chr4 21012780 21013090 -181315257 + AluSx SINE Alu 1 311 -1 23 54 0 0 chr4 21013702 21013739 -181314608 + AT_rich Low_complexity Low_complexity 1 37 0 431 259 69 0 chr4 21014087 21014203 -181314144 - MIR SINE MIR -59 203 80 1004 264 136 29 chr4 21014238 21014693 -181313654 - MLT1D LTR MaLR 0 505 2 564 298 50 33 chr4 21015814 21016113 -181312234 + L1ME3A LINE L1 5653 5956 -214 204 231 0 0 chr4 21016685 21016737 -181311610 + CT-rich Low_complexity Low_complexity 1 52 0 556 187 53 64 chr4 21017171 21017358 -181310989 + MER53 DNA DNA 4 188 -1 1570 220 65 44 chr4 21017376 21017871 -181310476 + MLT1D LTR MaLR 1 505 0 434 333 116 44 chr4 21019201 21019865 -181308482 - L2 LINE L2 -864 2450 1739 363 96 0 0 chr4 21020839 21020891 -181307456 + (GA)n Simple_repeat Simple_repeat 1 52 0 2295 122 23 3 chr4 21021056 21021400 -181306947 + THE1B LTR MaLR 14 364 0 3327 72 26 78 chr4 21021400 21021939 -181306408 + THE1B-int LTR MaLR 1 511 -1069 2156 165 44 30 chr4 21021972 21022516 -181305831 + MLT2A2 LTR ERVL 1 554 0 22 56 0 0 chr4 21023284 21023320 -181305027 + AT_rich Low_complexity Low_complexity 1 36 0 1423 291 74 13 chr4 21023874 21024334 -181304013 + Zaphod DNA AcHobo 21 508 -3523 45 55 0 0 chr4 21024473 21024546 -181303801 + AT_rich Low_complexity Low_complexity 1 73 0 1713 143 137 16 chr4 21024770 21025091 -181303256 - THE1B LTR MaLR -4 360 1 428 192 75 25 chr4 21025112 21025232 -181303115 + Zaphod DNA AcHobo 3737 3862 -169 7125 188 24 52 chr4 21025253 21027153 -181301194 + L1PB4 LINE L1 3462 5242 -914 216 0 0 0 chr4 21027153 21027177 -181301170 + (CAA)n Simple_repeat Simple_repeat 1 24 0 7125 188 24 52 chr4 21027177 21028065 -181300282 + L1PB4 LINE L1 5242 6154 -2 414 0 0 0 chr4 21028107 21028153 -181300194 + (T)n Simple_repeat Simple_repeat 1 46 0 21 36 0 0 chr4 21028170 21028198 -181300149 + GC_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 21028297 21028320 -181300027 + AT_rich Low_complexity Low_complexity 1 23 0 604 260 21 62 chr4 21028648 21028840 -181299507 - MER82 DNA MER2_type -469 184 1 421 299 40 40 chr4 21028849 21029023 -181299324 + MLT1K LTR MaLR 257 430 -158 244 315 0 33 chr4 21029092 21029184 -181299163 + MLT1K LTR MaLR 444 532 -56 6557 204 11 12 chr4 21029538 21030978 -181297369 - L1PA16 LINE L1 -1443 4703 3266 4605 179 11 6 chr4 21030978 21032278 -181296069 + L1PA16 LINE L1 4710 6014 -152 295 270 60 151 chr4 21032321 21032573 -181295774 + MIR SINE MIR 20 248 -14 1937 80 4 36 chr4 21033216 21033491 -181294856 + AluSp SINE Alu 1 266 -47 30 27 0 0 chr4 21033835 21033872 -181294475 + AT_rich Low_complexity Low_complexity 1 37 0 1428 252 75 23 chr4 21035505 21035946 -181292401 - MLT1D LTR MaLR -4 501 38 418 143 0 14 chr4 21035964 21036034 -181292313 - MLT1D LTR MaLR -423 82 14 271 298 0 0 chr4 21037077 21037161 -181291186 + (TTCA)n Simple_repeat Simple_repeat 1 84 0 501 302 166 0 chr4 21038658 21038863 -181289484 - MIR SINE MIR -12 250 12 569 113 0 10 chr4 21039745 21039842 -181288505 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 1020 111 0 0 chr4 21039842 21039995 -181288352 + (GAAA)n Simple_repeat Simple_repeat 1 153 0 276 322 95 19 chr4 21040456 21040731 -181287616 + L2 LINE L2 2714 3061 -252 237 309 173 31 chr4 21040801 21040992 -181287355 + MLT1G LTR MaLR 279 496 -94 199 197 49 115 chr4 21041037 21041159 -181287188 + L2 LINE L2 3136 3249 -64 376 287 30 10 chr4 21041225 21041326 -181287021 - MIR SINE MIR -111 151 49 28 29 0 0 chr4 21041336 21041371 -181286976 + AT_rich Low_complexity Low_complexity 1 35 0 627 286 132 0 chr4 21041414 21041627 -181286720 + MIR SINE MIR 9 249 -13 294 362 34 34 chr4 21041893 21042100 -181286247 - MIR3 SINE MIR -1 207 1 2210 139 28 0 chr4 21043025 21043378 -181284969 + THE1B LTR MaLR 1 363 -1 374 300 81 19 chr4 21043797 21043957 -181284390 - MIR SINE MIR -34 228 59 213 65 0 0 chr4 21044493 21044524 -181283823 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 198 365 27 0 chr4 21045855 21045929 -181282418 - L2 LINE L2 -11 3302 3227 270 0 0 0 chr4 21046130 21046160 -181282187 + (TAA)n Simple_repeat Simple_repeat 2 31 0 2002 130 10 0 chr4 21046182 21046475 -181281872 + AluSx SINE Alu 1 296 -16 1877 255 10 2 chr4 21046786 21047280 -181281067 + L1M4 LINE L1 4567 5064 -1082 265 374 174 0 chr4 21047737 21047852 -181280495 + L2 LINE L2 3134 3268 -4 2084 68 5 2 chr4 21048665 21049229 -181279118 + L1PA7 LINE L1 5479 6147 -7 2241 105 3 0 chr4 21049416 21049712 -181278635 + AluY SINE Alu 1 297 -14 219 256 98 24 chr4 21050444 21050526 -181277821 + MIR SINE MIR 21 108 -154 181 69 0 35 chr4 21050597 21050626 -181277721 + L3 LINE CR1 1234 1261 -316 772 165 6 98 chr4 21050904 21051068 -181277279 + MER5A DNA MER1_type 1 149 -40 227 274 0 0 chr4 21051277 21051328 -181277019 - L2 LINE L2 -5 3267 3217 21 0 0 0 chr4 21051389 21051410 -181276937 + AT_rich Low_complexity Low_complexity 1 21 0 1741 225 35 72 chr4 21052597 21053112 -181275235 + MLT2B1 LTR ERVL 17 512 -8 313 240 27 0 chr4 21053116 21053191 -181275156 - MIR SINE MIR -89 173 97 885 220 53 104 chr4 21053196 21053514 -181274833 + MLT1F1 LTR MaLR 3 304 -263 664 208 40 20 chr4 21053485 21053675 -181274672 + MLT1F1 LTR MaLR 432 567 0 * 24 0 0 0 chr4 21053892 21053916 -181274431 + AT_rich Low_complexity Low_complexity 1 24 0 385 92 0 2 chr4 21053925 21053985 -181274362 - Alu SINE Alu -250 52 1 2842 156 2 6 chr4 21053985 21054453 -181273894 - L1PA15 LINE L1 -125 6040 5575 351 148 59 30 chr4 21054454 21054555 -181273792 + AluSc SINE Alu 2 105 -194 11782 143 38 64 chr4 21054655 21057080 -181271267 - L1P LINE L1 -3617 2529 167 195 370 43 14 chr4 21057525 21057663 -181270684 + L2 LINE L2 2910 3051 -221 180 176 0 0 chr4 21059169 21059203 -181269144 + A-rich Low_complexity Low_complexity 1 34 0 183 80 0 0 chr4 21059923 21059948 -181268399 + (CA)n Simple_repeat Simple_repeat 2 26 0 228 200 20 0 chr4 21059955 21060005 -181268342 + (TA)n Simple_repeat Simple_repeat 1 51 0 1868 244 87 42 chr4 21060011 21061276 -181267071 - L1ME2 LINE L1 -10 6154 4835 635 254 60 10 chr4 21161283 21161484 -181166863 - HAL1 LINE L1 -1106 1401 1191 26 30 0 0 chr4 21161491 21161524 -181166823 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chr4 21161637 21161672 -181166675 + AT_rich Low_complexity Low_complexity 1 35 0 900 296 79 50 chr4 21161905 21162406 -181165941 - HAL1 LINE L1 -1908 599 77 1850 106 102 7 chr4 21162406 21162690 -181165657 - AluSx SINE Alu -1 311 1 900 296 79 50 chr4 21162690 21162770 -181165577 - HAL1 LINE L1 -2430 77 1 250 191 105 182 chr4 21163132 21163341 -181165006 + L2 LINE L2 3116 3308 -5 254 336 55 45 chr4 21164514 21164624 -181163723 + L2 LINE L2 3156 3266 -6 9510 89 15 1 chr4 21164681 21165732 -181162615 - L1P LINE L1 -1568 4578 3503 201 39 0 0 chr4 21165732 21165758 -181162589 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 9510 89 15 1 chr4 21165758 21166072 -181162275 - L1P LINE L1 -2643 3503 3195 6489 65 33 9 chr4 21166072 21167578 -181160769 + L1PA7 LINE L1 4624 6152 -2 864 89 0 0 chr4 21167662 21167785 -181160562 + (TA)n Simple_repeat Simple_repeat 1 123 0 1143 151 122 0 chr4 21168053 21168258 -181160089 + MSTA LTR MaLR 1 230 -198 25 0 0 0 chr4 21168744 21168769 -181159578 + AT_rich Low_complexity Low_complexity 1 25 0 437 182 68 0 chr4 21168769 21168857 -181159490 - FLAM_A SINE Alu -47 95 2 2067 144 0 6 chr4 21169018 21169331 -181159016 - AluSx SINE Alu -1 311 1 2083 113 7 7 chr4 21169400 21169701 -181158646 + AluSq SINE Alu 1 301 -12 642 315 83 15 chr4 21169704 21170223 -181158124 + L2 LINE L2 2682 3313 0 309 282 109 23 chr4 21170419 21170593 -181157754 + MIR SINE MIR 72 260 -2 1212 166 38 8 chr4 21171663 21171898 -181156449 - Tigger2 DNA MER2_type 0 2718 2477 1622 190 6 19 chr4 21171898 21172170 -181156177 + AluJo SINE Alu 1 270 -42 2204 126 36 14 chr4 21172170 21172526 -181155821 - THE1B LTR MaLR 0 364 1 1622 190 6 19 chr4 21172526 21172564 -181155783 + AluJo SINE Alu 270 307 -5 526 103 121 52 chr4 21172568 21172623 -181155724 - Tigger2 DNA MER2_type -225 2493 2443 2059 142 19 16 chr4 21172623 21172997 -181155350 - THE1C LTR MaLR 0 375 1 526 103 121 52 chr4 21172997 21173057 -181155290 - Tigger2 DNA MER2_type -275 2443 2370 20601 112 19 14 chr4 21173157 21176787 -181151560 - L1P3 LINE L1 -551 5672 2058 1091 200 0 0 chr4 21176810 21177000 -181151347 - AluSg/x SINE Alu -18 292 103 2308 95 3 0 chr4 21177103 21177398 -181150949 + AluSp SINE Alu 12 307 -6 1301 193 80 80 chr4 21177700 21177775 -181150572 - MER31B LTR ERV1 -2 659 586 1811 165 131 11 chr4 21177775 21178157 -181150190 + MSTA LTR MaLR 1 428 0 1301 193 80 80 chr4 21178157 21178456 -181149891 - MER31B LTR ERV1 -75 586 87 2019 173 72 22 chr4 21178456 21178860 -181149487 - MSTB LTR MaLR -2 424 1 1301 193 80 80 chr4 21178860 21178948 -181149399 - MER31B LTR ERV1 -574 87 1 21 0 0 0 chr4 21179113 21179134 -181149213 + AT_rich Low_complexity Low_complexity 1 21 0 420 271 62 39 chr4 21179293 21179523 -181148824 + MLT1J LTR MaLR 5 322 -189 220 275 14 0 chr4 21179629 21179698 -181148649 + (ATG)n Simple_repeat Simple_repeat 3 72 0 2261 115 0 10 chr4 21180019 21180332 -181148015 + AluSx SINE Alu 1 310 -2 481 299 42 6 chr4 21181319 21181486 -181146861 - MIR SINE MIR -37 225 53 1103 97 58 11 chr4 21181606 21181784 -181146563 - THE1B LTR MaLR -2 362 183 4217 236 61 40 chr4 21181903 21182868 -181145479 - L1MEc LINE L1 -3242 2973 2030 2199 135 0 0 chr4 21182868 21183180 -181145167 - AluSx SINE Alu 0 312 1 4217 236 61 40 chr4 21183180 21185101 -181143246 - L1MEc LINE L1 -4185 2030 59 1082 332 32 16 chr4 21185357 21185860 -181142487 - ERVL LTR ERVL -2574 3190 2680 665 220 8 8 chr4 21185971 21186103 -181142244 - MER5A DNA MER1_type -32 157 26 370 306 48 27 chr4 21186192 21186425 -181141922 - ERVL LTR ERVL -3224 2430 2203 1052 345 42 24 chr4 21186453 21187079 -181141268 - ERVL LTR ERVL -3636 2128 1492 358 291 0 0 chr4 21187243 21187322 -181141025 + MER5B DNA MER1_type 100 178 0 825 237 6 0 chr4 21188016 21188189 -181140158 - LTR33 LTR ERVL -4 517 344 225 363 39 0 chr4 21188352 21188454 -181139893 + L2 LINE L2 2247 2352 -962 461 270 57 52 chr4 21188705 21188916 -181139431 - L1ME3A LINE L1 -14 6156 5945 1452 219 42 26 chr4 21188965 21189348 -181138999 - L1MB8 LINE L1 -110 6068 5680 189 0 0 0 chr4 21189348 21189369 -181138978 + (TG)n Simple_repeat Simple_repeat 2 22 0 679 147 0 9 chr4 21189522 21189631 -181138716 + MLT1D LTR MaLR 58 165 -340 397 332 65 35 chr4 21189646 21189878 -181138469 + LTR33 LTR ERVL 11 249 -272 1836 219 70 65 chr4 21189887 21190543 -181137804 - L1MB8 LINE L1 -1225 4921 4263 294 103 0 0 chr4 21190644 21190683 -181137664 - THE1C LTR MaLR -336 39 1 262 235 153 41 chr4 21190755 21190925 -181137422 - Charlie8 DNA MER1_type -2153 264 76 277 308 83 0 chr4 21191070 21191190 -181137157 + MIR SINE MIR 100 229 -33 673 284 124 20 chr4 21191705 21192148 -181136199 - LTR33A LTR ERVL 0 523 35 344 343 47 24 chr4 21192430 21192599 -181135748 + MIR SINE MIR 65 237 -25 373 22 0 0 chr4 21193378 21193423 -181134924 + (TTA)n Simple_repeat Simple_repeat 1 180 0 2758 61 56 5 chr4 21193423 21193789 -181134558 - L1PA8 LINE L1 -18 6154 5767 554 303 87 80 chr4 21193908 21194494 -181133853 + L2 LINE L2 2730 3313 0 1972 55 63 0 chr4 21194559 21194814 -181133533 + L1P3 LINE L1 5441 5711 -443 291 363 27 0 chr4 21194900 21195046 -181133301 - L2 LINE L2 -12 3301 3152 192 261 87 0 chr4 21195447 21195516 -181132831 - MIR SINE MIR -71 191 117 400 348 53 18 chr4 21195995 21196222 -181132125 - MIR SINE MIR 0 262 28 268 317 197 7 chr4 21196707 21196849 -181131498 + MIR SINE MIR 21 189 -73 219 69 0 0 chr4 21196888 21196917 -181131430 + (TC)n Simple_repeat Simple_repeat 2 30 0 296 327 69 0 chr4 21197194 21197295 -181131052 - MIR3 SINE MIR -16 192 85 198 264 191 18 chr4 21198312 21198422 -181129925 - MIR SINE MIR -37 225 97 615 205 25 0 chr4 21201405 21201527 -181126820 + MLT1B LTR MaLR 1 125 -265 1141 29 0 7 chr4 21201527 21201666 -181126681 - L1PA5 LINE L1 -245 5910 5773 1760 48 0 4 chr4 21201666 21201882 -181126465 + L1PA5 LINE L1 5928 6145 -9 189 0 0 0 chr4 21201882 21201903 -181126444 + (TA)n Simple_repeat Simple_repeat 1 21 0 1281 220 7 22 chr4 21201913 21202190 -181126157 + MLT1B LTR MaLR 117 389 -1 2448 133 48 7 chr4 21202640 21203055 -181125292 - MSTB1 LTR MaLR 0 432 1 265 284 0 37 chr4 21203542 21203623 -181124724 - MER2 DNA MER2_type -1 344 267 727 148 16 0 chr4 21203768 21203896 -181124451 - MER2 DNA MER2_type -162 183 54 409 248 37 0 chr4 21203946 21204055 -181124292 - MER81 DNA DNA -1 113 1 787 189 54 49 chr4 21204390 21204575 -181123772 + MER5A DNA MER1_type 4 189 0 336 313 60 12 chr4 21204595 21204761 -181123586 - MER5B DNA MER1_type -3 175 2 22 0 0 0 chr4 21208471 21208493 -181119854 + AT_rich Low_complexity Low_complexity 1 22 0 228 241 80 0 chr4 21208558 21208627 -181119720 - MIR SINE MIR -63 145 69 1143 197 62 55 chr4 21209141 21209466 -181118881 + L1MA10 LINE L1 6005 6331 -3 1786 141 32 60 chr4 21209880 21210227 -181118120 - MER1B DNA MER1_type 0 337 1 1016 220 47 99 chr4 21210499 21210976 -181117371 - THE1C LTR MaLR 0 428 1 706 130 109 7 chr4 21210976 21211114 -181117233 - Tigger2 DNA MER2_type -275 2443 2292 268 196 0 0 chr4 21211140 21211186 -181117161 - Tigger2 DNA MER2_type -2672 46 1 239 329 26 0 chr4 21211823 21211899 -181116448 + L2 LINE L2 3182 3259 -54 21 36 0 0 chr4 21213003 21213031 -181115316 + AT_rich Low_complexity Low_complexity 1 28 0 432 292 23 8 chr4 21213066 21213196 -181115151 + MIR SINE MIR 110 241 -21 25 31 0 0 chr4 21213315 21213347 -181115000 + AT_rich Low_complexity Low_complexity 1 32 0 1882 172 3 0 chr4 21213423 21213726 -181114621 - AluSx SINE Alu -8 304 1 384 59 0 0 chr4 21213765 21213816 -181114531 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 309 347 47 24 chr4 21214063 21214360 -181113987 - HAL1b LINE L1 -673 675 372 21 36 0 0 chr4 21214392 21214420 -181113927 + AT_rich Low_complexity Low_complexity 1 28 0 934 247 59 52 chr4 21217664 21218089 -181110258 - MER69B DNA AcHobo -89 1137 710 235 286 133 19 chr4 21218393 21218498 -181109849 - MIR SINE MIR -110 152 36 2633 252 42 17 chr4 21220218 21221251 -181107096 - L1MC/D LINE L1 -743 5683 4657 428 175 21 0 chr4 21221306 21221403 -181106944 - L1M4 LINE L1 -1068 5078 4980 936 168 10 0 chr4 21221427 21221624 -181106723 - L1MA4 LINE L1 -11 6289 6091 3102 173 29 24 chr4 21221624 21222773 -181105574 + L1M1 LINE L1 4653 5793 -507 307 214 0 14 chr4 21222774 21222844 -181105503 - L1MC/D LINE L1 -4363 2063 1995 * 336 231 35 8 chr4 21222816 21222940 -181105407 - L1MC4 LINE L1 -1339 6983 1995 258 156 0 0 chr4 21222940 21222985 -181105362 + (TA)n Simple_repeat Simple_repeat 1 45 0 2048 257 62 21 chr4 21223115 21223874 -181104473 - L1MEc LINE L1 -1986 4229 3440 1339 242 47 85 chr4 21223877 21224621 -181103726 - L1MEc LINE L1 -4002 2394 1679 628 279 104 17 chr4 21224694 21225174 -181103173 - L1MEc LINE L1 -1741 4474 3953 * 911 242 56 78 chr4 21225170 21225616 -181102731 - L1MEc LINE L1 -3381 2834 2399 2599 167 82 34 chr4 21225631 21226374 -181101973 + LTR1B LTR ERV1 1 826 0 412 260 27 81 chr4 21226390 21226613 -181101734 - L1MEc LINE L1 -3985 2411 2201 783 231 117 36 chr4 21226615 21226896 -181101451 - L1MC3 LINE L1 -1419 6366 6063 202 182 36 0 chr4 21226955 21227010 -181101337 + (TA)n Simple_repeat Simple_repeat 1 57 0 1166 314 90 24 chr4 21227028 21228189 -181100158 - L1MEc LINE L1 -4331 2065 829 1651 135 0 4 chr4 21228917 21229154 -181099193 - AluSq SINE Alu -77 236 1 183 326 39 62 chr4 21229337 21229466 -181098881 + L2 LINE L2 2590 2715 -599 1280 229 83 47 chr4 21229682 21230044 -181098303 - MLT1B LTR MaLR -15 375 1 352 289 50 8 chr4 21230550 21230671 -181097676 + MLT1L LTR MaLR 141 266 -349 1743 180 44 0 chr4 21231052 21231369 -181096978 - MER44D DNA MER2_type 0 609 9 2008 131 0 13 chr4 21231412 21231725 -181096622 - AluSg SINE Alu -1 309 1 289 355 30 105 chr4 21231854 21232186 -181096161 + L2 LINE L2 2966 3272 0 3672 306 89 18 chr4 21232311 21233979 -181094368 - L2 LINE L2 -532 2782 996 528 155 17 43 chr4 21234137 21234253 -181094094 + L1MA4 LINE L1 5890 6002 -298 23 0 0 0 chr4 21234598 21234621 -181093726 + AT_rich Low_complexity Low_complexity 1 23 0 476 236 71 0 chr4 21235265 21235392 -181092955 + L1MA5 LINE L1 5953 6088 -212 2191 276 73 41 chr4 21235396 21236572 -181091775 - L1MDa LINE L1 -1773 4767 3554 1036 167 0 0 chr4 21236574 21236736 -181091611 - AluJb SINE Alu -9 303 142 7107 258 63 32 chr4 21236831 21239489 -181088858 - L1MDa LINE L1 -3041 3499 710 2019 157 40 0 chr4 21239489 21239839 -181088508 - THE1B LTR MaLR 0 364 1 7107 258 63 32 chr4 21239839 21240557 -181087790 - L1MDa LINE L1 -5830 710 16 311 164 100 64 chr4 21240793 21240903 -181087444 - MER110 LTR ERV1 0 491 378 638 316 26 7 chr4 21241003 21241275 -181087072 - MER110 LTR ERV1 0 491 215 185 254 16 79 chr4 21241969 21242032 -181086315 + L2 LINE L2 3199 3257 -15 338 282 0 13 chr4 21243097 21243175 -181085172 + MLT1H LTR MaLR 75 151 -398 437 227 49 47 chr4 21244068 21244227 -181084120 + MLT1H LTR MaLR 386 547 -8 343 362 71 21 chr4 21244460 21244742 -181083605 + MLT1K LTR MaLR 18 313 -275 371 287 64 19 chr4 21244799 21244956 -181083391 + MLT1K LTR MaLR 423 586 -2 238 183 0 50 chr4 21245458 21245518 -181082829 - LTR33A LTR ERVL -22 501 445 708 236 162 82 chr4 21245917 21246319 -181082028 - MLT2B1 LTR ERVL 0 520 87 414 211 256 0 chr4 21246447 21246580 -181081767 + MER33 DNA MER1_type 6 172 -152 1141 222 65 37 chr4 21246892 21247243 -181081104 + MLT1A1 LTR MaLR 1 361 -4 1362 86 111 82 chr4 21247243 21247538 -181080809 + AluSg SINE Alu 29 330 0 618 267 14 74 chr4 21247569 21247786 -181080561 + MLT-int LTR MaLR 811 1014 -721 2392 236 102 0 chr4 21247801 21248330 -181080017 + MLT1A1-int LTR MaLR 1153 1735 0 396 217 60 0 chr4 21248331 21248414 -181079933 + MLT1A1 LTR MaLR 2 89 -276 21 36 0 0 chr4 21250261 21250289 -181078058 + AT_rich Low_complexity Low_complexity 1 28 0 386 324 41 29 chr4 21250455 21250625 -181077722 - MIR SINE MIR -1 261 90 25 31 0 0 chr4 21250847 21250879 -181077468 + AT_rich Low_complexity Low_complexity 1 32 0 192 331 93 26 chr4 21251224 21251375 -181076972 + MIR SINE MIR 73 233 -29 22 35 0 0 chr4 21251680 21251709 -181076638 + AT_rich Low_complexity Low_complexity 1 29 0 2394 156 18 10 chr4 21253023 21253420 -181074927 + MSTA LTR MaLR 27 426 -2 236 389 159 0 chr4 21253607 21253764 -181074583 - L2 LINE L2 -75 3197 3016 210 71 0 0 chr4 21253843 21253871 -181074476 + (TTG)n Simple_repeat Simple_repeat 2 29 0 942 247 60 7 chr4 21255245 21255786 -181072561 + MLT1E1 LTR MaLR 1 631 -22 242 266 137 16 chr4 21255786 21255910 -181072437 + L1ME LINE L1 4272 4410 -1736 519 299 53 13 chr4 21255914 21256232 -181072115 + L1ME LINE L1 4488 4818 -1328 481 309 102 50 chr4 21256315 21257054 -181071293 + L1ME LINE L1 4907 5684 -478 333 248 9 44 chr4 21257337 21257450 -181070897 + GA-rich Low_complexity Low_complexity 2 110 0 7551 31 0 1 chr4 21257450 21258450 -181069897 + L1PA3 LINE L1 5157 6155 0 355 263 71 86 chr4 21258585 21258644 -181069703 - L1MEd LINE L1 -3642 2740 2682 1959 134 0 3 chr4 21258644 21258928 -181069419 - AluSx SINE Alu -20 292 10 215 30 0 30 chr4 21258929 21258962 -181069385 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 1633 152 70 7 chr4 21258969 21259239 -181069108 - AluSx SINE Alu -25 287 1 355 263 71 86 chr4 21259239 21259424 -181068923 - L1MEd LINE L1 -3706 2676 2490 436 230 144 66 chr4 21260196 21260453 -181067894 - LTR37B LTR ERV1 -181 287 11 360 300 144 15 chr4 21260535 21260805 -181067542 - L1MEd LINE L1 -4710 1674 1370 619 330 72 25 chr4 21260890 21261321 -181067026 - L1MEd LINE L1 -4963 1409 959 328 304 28 56 chr4 21261421 21261635 -181066712 - L1MEd LINE L1 -5636 736 529 395 321 108 47 chr4 21261911 21262123 -181066224 + HAL1 LINE L1 1676 1900 -607 25 31 0 0 chr4 21262261 21262293 -181066054 + AT_rich Low_complexity Low_complexity 1 32 0 317 106 0 0 chr4 21262308 21262355 -181065992 - MLT2A1 LTR ERVL -8 436 390 23 33 0 0 chr4 21262355 21262385 -181065962 + AT_rich Low_complexity Low_complexity 1 30 0 3088 68 5 2 chr4 21262406 21262804 -181065543 - MLT2A1 LTR ERVL -45 399 1 368 280 19 85 chr4 21262806 21263124 -181065223 + HAL1 LINE L1 2049 2345 -162 23 0 0 0 chr4 21263274 21263297 -181065050 + AT_rich Low_complexity Low_complexity 1 23 0 2040 143 40 27 chr4 21263811 21264181 -181064166 - THE1C LTR MaLR 0 375 1 4521 35 4 0 chr4 21265010 21265556 -181062791 - L1PA4 LINE L1 -1691 4455 3908 7742 26 5 0 chr4 21265556 21267240 -181061107 + L1PA4 LINE L1 4464 6152 -3 180 0 0 0 chr4 21267441 21267461 -181060886 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 22 0 0 0 chr4 21267719 21267741 -181060606 + AT_rich Low_complexity Low_complexity 1 22 0 184 273 61 0 chr4 21268122 21268188 -181060159 + L2 LINE L2 3229 3298 -15 1803 144 33 0 chr4 21269233 21269538 -181058809 + AluSg SINE Alu 1 314 0 1612 216 28 37 chr4 21270987 21271418 -181056929 - MSTC LTR MaLR 0 428 2 2086 133 7 0 chr4 21271509 21271810 -181056537 - AluSx SINE Alu -9 303 1 879 322 86 47 chr4 21271923 21272579 -181055768 + L2 LINE L2 2370 3061 -252 1585 163 31 0 chr4 21272605 21272862 -181055485 - AluSx SINE Alu -36 276 12 664 290 112 74 chr4 21273716 21274342 -181054005 + L2 LINE L2 2594 3239 -74 421 246 8 63 chr4 21274332 21274458 -181053889 - L2 LINE L2 -1 3312 3194 * 361 289 0 0 chr4 21274477 21274567 -181053780 + L2 LINE L2 3221 3310 -3 2630 81 2 81 chr4 21275316 21275725 -181052622 - MER51B LTR ERV1 0 377 1 317 316 11 0 chr4 21275726 21275821 -181052526 + MIR SINE MIR 150 245 -17 2188 86 0 43 chr4 21276330 21276634 -181051713 + AluY SINE Alu 1 291 -20 1977 180 11 6 chr4 21276842 21277203 -181051144 - MLT1A1 LTR MaLR 0 365 3 201 178 0 0 chr4 21277359 21277404 -181050943 + (CA)n Simple_repeat Simple_repeat 2 46 0 447 164 18 18 chr4 21278231 21278341 -181050006 + CT-rich Low_complexity Low_complexity 2 111 0 181 359 136 0 chr4 21278931 21279115 -181049232 + L2 LINE L2 2979 3187 -126 359 234 65 28 chr4 21280464 21280571 -181047776 + MIR SINE MIR 152 262 0 324 311 97 60 chr4 21280704 21281003 -181047344 - L2 LINE L2 -55 3258 2949 621 274 132 5 chr4 21281434 21281631 -181046716 + MIR SINE MIR 32 253 -9 260 304 36 18 chr4 21281696 21281808 -181046539 + MIR SINE MIR 138 251 -11 1752 134 106 3 chr4 21282089 21282373 -181045974 + AluSp SINE Alu 1 313 0 543 304 119 60 chr4 21282699 21282743 -181045604 - L2 LINE L2 0 3313 3273 796 224 293 36 chr4 21282743 21283374 -181044973 - LTR50 LTR ERVL 0 795 3 543 304 119 60 chr4 21283374 21283889 -181044458 - L2 LINE L2 -40 3273 2646 571 271 80 73 chr4 21283897 21284199 -181044148 + MER102a DNA MER1_type 27 330 0 266 138 62 15 chr4 21284682 21284747 -181043600 - MLT2B1 LTR ERVL -2 518 451 453 96 84 6 chr4 21284748 21284914 -181043433 + (TA)n Simple_repeat Simple_repeat 2 180 0 21 0 0 0 chr4 21284929 21284950 -181043397 + AT_rich Low_complexity Low_complexity 1 21 0 340 103 109 0 chr4 21284955 21285111 -181043236 + (TA)n Simple_repeat Simple_repeat 1 173 0 606 154 138 15 chr4 21285358 21285488 -181042859 - MLT1A1 LTR MaLR -218 147 2 766 159 53 36 chr4 21285497 21285670 -181042677 + MLT1A1 LTR MaLR 226 365 0 2258 110 51 25 chr4 21285787 21286142 -181042205 - THE1B LTR MaLR 0 364 1 2021 130 3 15 chr4 21286142 21286466 -181041881 - MER44D DNA MER2_type -9 600 11 315 207 12 61 chr4 21287187 21287269 -181041078 - MIR SINE MIR -19 243 166 1648 43 0 0 chr4 21287342 21287551 -181040796 - L1P LINE L1 -909 5237 5029 2941 37 0 0 chr4 21287551 21287900 -181040447 + L1PA5 LINE L1 5803 6152 -2 330 45 0 0 chr4 21288425 21288469 -181039878 + (TG)n Simple_repeat Simple_repeat 2 45 0 1540 201 7 3 chr4 21288469 21288753 -181039594 - AluJb SINE Alu -27 285 1 1108 212 0 0 chr4 21288817 21289015 -181039332 + Tigger3(Golem) DNA MER2_type 4 201 -2828 * 3498 142 32 14 chr4 21289008 21289672 -181038675 + Tigger3(Golem) DNA MER2_type 2353 3028 -1 3418 64 11 2 chr4 21289739 21290191 -181038156 - L1PA7 LINE L1 -5 6149 5694 239 83 28 0 chr4 21290191 21290227 -181038120 + L1PA7 LINE L1 5678 5714 -417 801 272 28 101 chr4 21292165 21292457 -181035890 - MLT1I LTR MaLR 0 409 158 2453 68 0 10 chr4 21292457 21292766 -181035581 + AluY SINE Alu 1 306 -5 801 272 28 101 chr4 21292766 21292910 -181035437 - MLT1I LTR MaLR -251 158 5 1618 166 3 11 chr4 21293032 21293316 -181035031 - Tigger3(Golem) DNA MER2_type -1 3028 2747 1065 287 226 6 chr4 21293608 21294131 -181034216 - L2 LINE L2 -316 2997 2365 948 127 27 7 chr4 21294193 21294343 -181034004 + L1PA15 LINE L1 6007 6159 -6 281 217 17 0 chr4 21294422 21294482 -181033865 + MER99 DNA DNA 2 62 -766 1432 175 79 10 chr4 21294482 21294601 -181033746 + AluSx SINE Alu 1 110 -202 234 62 0 0 chr4 21294601 21294633 -181033714 + (TAA)n Simple_repeat Simple_repeat 1 32 0 1432 175 79 10 chr4 21294633 21294761 -181033586 + AluSx SINE Alu 110 273 -39 1645 169 83 17 chr4 21294761 21295111 -181033236 - THE1C LTR MaLR -2 373 1 1432 175 79 10 chr4 21295111 21295153 -181033194 + AluSx SINE Alu 273 311 -1 257 186 0 0 chr4 21295152 21295195 -181033152 + MER99 DNA DNA 50 92 -736 * 2373 232 63 3 chr4 21295902 21296502 -181031845 + MER99 DNA DNA 192 827 -1 873 232 6 6 chr4 21296633 21296810 -181031537 + MER5A DNA MER1_type 4 180 -9 207 281 0 0 chr4 21297424 21297506 -181030841 + (TA)n Simple_repeat Simple_repeat 2 83 0 1977 131 0 0 chr4 21298247 21298514 -181029833 + AluSc SINE Alu 7 273 -36 183 42 0 0 chr4 21298521 21298545 -181029802 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 834 226 95 50 chr4 21299019 21299257 -181029090 + MER58B DNA MER1_type 37 291 -2129 629 305 9 27 chr4 21299257 21299480 -181028867 + MER20 DNA MER1_type 1 219 0 834 226 95 50 chr4 21299480 21299524 -181028823 + MER58B DNA MER1_type 291 332 -9 486 272 114 27 chr4 21300712 21300896 -181027451 + MIR SINE MIR 29 228 -34 226 306 0 31 chr4 21301242 21301340 -181027007 + T-rich Low_complexity Low_complexity 3 97 0 213 121 0 0 chr4 21301344 21301377 -181026970 + (TCC)n Simple_repeat Simple_repeat 3 35 0 235 200 170 16 chr4 21301935 21301992 -181026355 + MIR SINE MIR 20 67 -141 1604 279 56 28 chr4 21301992 21302601 -181025746 - MLT2E LTR ERVL 0 628 3 235 200 170 16 chr4 21302601 21302654 -181025693 + MIR SINE MIR 67 154 -54 475 223 0 0 chr4 21303804 21303907 -181024440 - MER58 DNA MER1_type 0 2420 2318 2367 96 3 0 chr4 21304094 21304427 -181023920 - pTR5 LTR ERV1 -2046 392 59 313 242 33 0 chr4 21304427 21304518 -181023829 - LTR30 LTR ERV1 -85 637 544 3160 143 47 33 chr4 21304522 21305315 -181023032 - pTR5 LTR ERV1 -417 2021 743 24 0 0 0 chr4 21305593 21305617 -181022730 + AT_rich Low_complexity Low_complexity 1 24 0 382 390 70 18 chr4 21305681 21306012 -181022335 - L2 LINE L2 0 3272 2925 263 329 129 50 chr4 21306143 21306423 -181021924 - L2 LINE L2 -460 2854 2553 2104 138 48 20 chr4 21307203 21307557 -181020790 - THE1B LTR MaLR 0 364 1 844 300 81 3 chr4 21308235 21308568 -181019779 + L2 LINE L2 2954 3312 -1 216 122 0 0 chr4 21309276 21309317 -181019030 + (TC)n Simple_repeat Simple_repeat 1 41 0 448 210 31 0 chr4 21309348 21309510 -181018837 + (TA)n Simple_repeat Simple_repeat 2 168 0 23 86 0 0 chr4 21310430 21310488 -181017859 + AT_rich Low_complexity Low_complexity 1 58 0 421 216 31 74 chr4 21310518 21310680 -181017667 - L2 LINE L2 0 3313 3159 264 197 26 26 chr4 21310695 21310771 -181017576 - MER116 DNA Mariner -1 79 4 1145 266 75 44 chr4 21311565 21312245 -181016102 - HAL1 LINE L1 -4 2503 1803 983 228 46 3 chr4 21312257 21312542 -181015805 - MER33 DNA MER1_type -6 318 22 300 175 18 0 chr4 21312591 21312648 -181015699 - HAL1 LINE L1 -917 1590 1533 376 298 73 49 chr4 21313182 21313387 -181014960 + MIR SINE MIR 32 241 -21 23 68 0 0 chr4 21314476 21314520 -181013827 + AT_rich Low_complexity Low_complexity 1 44 0 2093 310 32 22 chr4 21314520 21315523 -181012824 - L2 LINE L2 0 3313 2302 400 345 57 57 chr4 21315686 21315932 -181012415 + MIR SINE MIR 11 256 -6 420 164 0 0 chr4 21317275 21317342 -181011005 + AluJ/FLAM SINE Alu 2 68 -244 968 146 0 13 chr4 21317452 21317610 -181010737 + L1PA7 LINE L1 5986 6141 -13 3572 264 60 45 chr4 21317698 21319518 -181008829 + L1ME LINE L1 2205 4051 -2095 1473 226 41 62 chr4 21319530 21319860 -181008487 + L1ME LINE L1 4795 5131 -1035 4664 26 0 2 chr4 21319860 21320407 -181007940 + L1PA4 LINE L1 5610 6155 0 1473 226 41 62 chr4 21320407 21320975 -181007372 + L1ME LINE L1 5131 5673 -493 1926 214 33 70 chr4 21320982 21321500 -181006847 - MLT1D LTR MaLR -6 499 1 271 281 11 0 chr4 21321500 21321589 -181006758 + L1ME LINE L1 5670 5759 -407 1177 89 24 18 chr4 21321589 21321758 -181006589 - THE1C LTR MaLR -205 170 1 389 282 24 59 chr4 21321840 21322010 -181006337 + HERVL LTR ERVL 3468 3631 -2023 588 313 46 11 chr4 21322458 21322720 -181005627 + HERVL LTR ERVL 4323 4593 -1061 330 403 22 0 chr4 21323306 21323445 -181004902 + LTR33 LTR ERVL 86 227 -294 551 317 165 17 chr4 21323571 21323984 -181004363 - LTR33 LTR ERVL 0 521 48 265 273 163 66 chr4 21325223 21325424 -181002923 + MIR SINE MIR 36 252 -10 240 269 39 87 chr4 21326135 21326239 -181002108 + MLT1H1 LTR MaLR 140 238 -292 261 270 145 50 chr4 21326266 21326425 -181001922 + MLT1H1 LTR MaLR 382 555 0 3658 160 70 57 chr4 21326475 21327252 -181001095 - MER54B LTR ERVL 0 793 7 2133 134 111 28 chr4 21327498 21327893 -181000454 + MSTA LTR MaLR 1 428 0 1964 134 113 3 chr4 21327962 21328290 -181000057 - THE1B LTR MaLR 0 364 1 1806 131 136 60 chr4 21329700 21330097 -180998250 + MSTA LTR MaLR 2 428 0 1442 35 0 6 chr4 21330186 21330359 -180997988 - AluY SINE Alu -11 300 129 183 80 0 0 chr4 21330656 21330681 -180997666 + (TG)n Simple_repeat Simple_repeat 1 25 0 1604 239 92 10 chr4 21330687 21331088 -180997259 + MLT2B1 LTR ERVL 83 516 -4 868 253 59 10 chr4 21331093 21331398 -180996949 + HERVL-B1 LTR ERVL 2 321 -5333 * 3277 184 20 17 chr4 21331396 21331983 -180996364 + HERVL-B1 LTR ERVL 1151 1739 -4025 7464 185 17 18 chr4 21331987 21334724 -180993623 + HERVL-B1 LTR ERVL 2921 5757 -7 1204 251 27 13 chr4 21334724 21335023 -180993324 + MLT2B1 LTR ERVL 1 303 -217 21 0 0 0 chr4 21335080 21335101 -180993246 + AT_rich Low_complexity Low_complexity 1 21 0 274 119 24 0 chr4 21335227 21335269 -180993078 + MER4E LTR ERV1 654 696 -70 442 316 109 57 chr4 21335387 21335967 -180992380 + L1M4 LINE L1 3047 3656 -2490 21 36 0 0 chr4 21336449 21336477 -180991870 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 21336624 21336654 -180991693 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr4 21336722 21336751 -180991596 + AT_rich Low_complexity Low_complexity 1 29 0 246 304 173 24 chr4 21336791 21336959 -180991388 - MIR SINE MIR -48 214 22 950 278 160 29 chr4 21337784 21338370 -180989977 - MLT2F LTR ERVL 0 663 1 262 294 29 39 chr4 21338569 21338671 -180989676 + L3 LINE CR1 1471 1571 -6 2280 68 0 39 chr4 21339170 21339478 -180988869 + AluY SINE Alu 5 300 -11 284 83 21 0 chr4 21339735 21339783 -180988564 + (TG)n Simple_repeat Simple_repeat 2 50 0 270 378 52 7 chr4 21341162 21341297 -180987050 - MIR SINE MIR -98 164 24 23 33 0 0 chr4 21341637 21341667 -180986680 + AT_rich Low_complexity Low_complexity 1 30 0 241 202 0 135 chr4 21342147 21342251 -180986096 - L1MC4 LINE L1 -1339 6703 6614 225 178 0 0 chr4 21342270 21342315 -180986032 + (TA)n Simple_repeat Simple_repeat 1 45 0 25 51 0 0 chr4 21342352 21342391 -180985956 + AT_rich Low_complexity Low_complexity 1 39 0 194 327 0 0 chr4 21344191 21344246 -180984101 + L2 LINE L2 2589 2643 -671 240 279 15 0 chr4 21345033 21345101 -180983246 + GA-rich Low_complexity Low_complexity 3 71 0 190 342 56 94 chr4 21346135 21346369 -180981978 - L2 LINE L2 -47 3225 3001 23 108 0 0 chr4 21346617 21346710 -180981637 + AT_rich Low_complexity Low_complexity 1 93 0 513 289 141 16 chr4 21346972 21347276 -180981071 - MLT1I LTR MaLR -38 371 30 970 234 60 37 chr4 21347373 21347642 -180980705 - MLT2B1 LTR ERVL -244 276 2 1763 124 65 50 chr4 21347673 21348012 -180980335 - Tigger7 DNA MER2_type -1 2586 2243 661 192 294 0 chr4 21348010 21348187 -180980160 + Tigger7 DNA MER2_type 76 304 -2183 * 428 216 0 0 chr4 21348210 21348284 -180980063 - Tigger7 DNA MER2_type -265 74 1 212 194 0 0 chr4 21348987 21349023 -180979324 + (TA)n Simple_repeat Simple_repeat 2 37 0 469 184 0 0 chr4 21349041 21349117 -180979230 + AluSx SINE Alu 1 76 -236 5255 127 101 85 chr4 21349121 21350672 -180977675 - pTR5 LTR ERV1 -1 2437 743 1421 126 51 9 chr4 21350672 21350886 -180977461 + AluSx SINE Alu 73 295 -17 22 0 0 0 chr4 21350889 21350911 -180977436 + AT_rich Low_complexity Low_complexity 1 22 0 432 313 84 84 chr4 21350911 21351662 -180976685 - L1M4 LINE L1 -3240 2970 2220 263 241 0 0 chr4 21351692 21351746 -180976601 - Tigger5 DNA MER2_type -2269 54 1 405 292 7 45 chr4 21351764 21351918 -180976429 - HAL1 LINE L1 -1196 1311 1164 908 305 76 27 chr4 21353609 21354058 -180974289 + L2 LINE L2 2843 3313 0 313 172 0 0 chr4 21354141 21354199 -180974148 + Tigger4(Zombi) DNA MER2_type 1 58 -2673 237 33 0 0 chr4 21354199 21354229 -180974118 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 2432 110 14 0 chr4 21354229 21354585 -180973762 - L1PB1 LINE L1 -10 6141 5781 212 100 25 0 chr4 21354585 21354625 -180973722 + (TA)n Simple_repeat Simple_repeat 1 41 0 198 103 0 0 chr4 21354624 21354653 -180973694 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 2333 110 9 3 chr4 21354653 21354998 -180973349 - L1PB1 LINE L1 -360 5791 5445 4318 205 18 12 chr4 21355000 21356024 -180972323 + L1 LINE L1 3893 4922 -1224 403 304 141 48 chr4 21356403 21356758 -180971589 - L2 LINE L2 -5 3308 2921 437 295 0 22 chr4 21356884 21357023 -180971324 - MER45 DNA AcHobo -2 1579 1444 754 242 28 6 chr4 21357411 21357593 -180970754 - MER20 DNA MER1_type 0 219 34 258 274 226 0 chr4 21358095 21358201 -180970146 + L2 LINE L2 3184 3313 0 1605 186 94 3 chr4 21358210 21358517 -180969830 - MLT1A1 LTR MaLR 0 365 31 638 159 0 0 chr4 21359897 21360010 -180968337 + L1M4 LINE L1 4705 4817 -1329 2354 279 52 16 chr4 21360111 21361221 -180967126 - L1M4 LINE L1 -4644 1497 288 2143 123 53 17 chr4 21361221 21361580 -180966767 + THE1C LTR MaLR 1 372 -3 2354 279 52 16 chr4 21361580 21361733 -180966614 - L1M4 LINE L1 -5853 288 142 506 195 9 9 chr4 21361843 21361956 -180966391 + Tigger4(Zombi) DNA MER2_type 155 267 -2464 * 1288 147 37 0 chr4 21361955 21362173 -180966174 + Tigger4(Zombi) DNA MER2_type 2506 2731 0 1640 199 152 39 chr4 21362443 21362910 -180965437 + MLT2B1 LTR ERVL 1 520 0 456 194 0 31 chr4 21363028 21363126 -180965221 - MER94 DNA DNA -1 133 39 214 372 11 0 chr4 21363367 21363461 -180964886 + L2 LINE L2 2537 2631 -683 2876 110 30 0 chr4 21363464 21363864 -180964483 + MLT2A2 LTR ERVL 42 453 0 200 224 53 53 chr4 21364600 21364676 -180963671 + MIR SINE MIR 187 262 0 1076 114 24 0 chr4 21365125 21365291 -180963056 - MSTA LTR MaLR -258 170 1 212 274 24 36 chr4 21365296 21365380 -180962967 + L2 LINE L2 1611 1693 -1621 2183 151 22 6 chr4 21366060 21366418 -180961929 + THE1B LTR MaLR 1 364 0 10086 109 35 39 chr4 21366418 21368003 -180960344 + THE1B-int LTR MaLR 1 1580 0 2089 159 31 6 chr4 21368007 21368358 -180959989 + THE1B LTR MaLR 5 364 0 2194 133 6 11 chr4 21368468 21368820 -180959527 - Tigger7 DNA MER2_type 0 2487 2138 744 195 0 0 chr4 21368817 21368935 -180959412 - Tigger7 DNA MER2_type -615 118 1 * 404 280 15 38 chr4 21369327 21369459 -180958888 - MIR SINE MIR -74 188 60 1854 171 52 19 chr4 21369459 21369827 -180958520 + MLT2B1 LTR ERVL 1 380 -140 233 37 0 0 chr4 21369818 21369845 -180958502 + MLT2B1 LTR ERVL 489 515 0 * 234 268 31 52 chr4 21371127 21371224 -180957123 - MIR SINE MIR -86 176 82 244 353 46 46 chr4 21372067 21372240 -180956107 + L2 LINE L2 2417 2589 -725 15993 181 3 9 chr4 21372240 21375163 -180953184 + HERVH LTR ERV1 4660 7565 -148 21 0 0 0 chr4 21375269 21375290 -180953057 + AT_rich Low_complexity Low_complexity 1 21 0 206 32 32 0 chr4 21376143 21376174 -180952173 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 495 317 73 19 chr4 21377051 21377256 -180951091 + MIR SINE MIR 24 239 -23 2552 62 0 0 chr4 21377564 21377868 -180950479 + AluY SINE Alu 1 304 -7 183 380 14 0 chr4 21378000 21378071 -180950276 + L2 LINE L2 3198 3269 -44 2371 90 0 0 chr4 21378347 21378646 -180949701 - AluSp SINE Alu -14 299 1 22 56 0 0 chr4 21380018 21380054 -180948293 + AT_rich Low_complexity Low_complexity 1 36 0 263 283 79 13 chr4 21380103 21380255 -180948092 - MER103 DNA DNA -1 165 4 216 0 0 0 chr4 21380634 21380658 -180947689 + (CA)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr4 21381264 21381292 -180947055 + AT_rich Low_complexity Low_complexity 1 28 0 1727 192 14 0 chr4 21383064 21383361 -180944986 - AluJb SINE Alu -11 301 1 257 248 248 46 chr4 21383476 21383629 -180944718 - MIR SINE MIR -36 226 43 2061 121 4 4 chr4 21384033 21384314 -180944033 + AluSx SINE Alu 1 281 -31 255 340 0 47 chr4 21384431 21384537 -180943810 - MIR SINE MIR -99 163 63 284 279 39 47 chr4 21385240 21385369 -180942978 + L2 LINE L2 3182 3309 -4 281 267 172 0 chr4 21385790 21385906 -180942441 + MIR SINE MIR 117 252 -10 262 259 24 12 chr4 21386167 21386252 -180942095 - MLT1L LTR MaLR -23 592 507 192 254 51 0 chr4 21387092 21387151 -180941196 - MIR SINE MIR -70 192 131 461 267 30 67 chr4 21387155 21387290 -180941057 + L2 LINE L2 3179 3308 -5 333 273 62 150 chr4 21387415 21387763 -180940584 + L2 LINE L2 2825 3119 -153 1262 181 96 63 chr4 21387763 21388095 -180940252 - MER2 DNA MER2_type 0 344 2 333 273 62 150 chr4 21388095 21388234 -180940113 + L2 LINE L2 3119 3269 -3 364 314 138 42 chr4 21388429 21388690 -180939657 + L2 LINE L2 2987 3272 0 316 280 0 40 chr4 21388853 21388928 -180939419 + MER91A DNA MER1_type 22 93 -103 288 0 0 0 chr4 21388961 21388993 -180939354 + (TA)n Simple_repeat Simple_repeat 2 33 0 261 0 0 0 chr4 21388993 21389022 -180939325 + (T)n Simple_repeat Simple_repeat 1 29 0 235 264 14 43 chr4 21389122 21389262 -180939085 + Charlie7 DNA MER1_type 2471 2606 -6 354 45 0 0 chr4 21389403 21389447 -180938900 + (TG)n Simple_repeat Simple_repeat 1 44 0 309 304 81 20 chr4 21389750 21389898 -180938449 + MIR SINE MIR 20 176 -86 485 170 10 30 chr4 21389899 21389999 -180938348 + FLAM_A SINE Alu 31 128 -14 2062 147 0 3 chr4 21391564 21391863 -180936484 + AluSx SINE Alu 3 300 -12 311 389 15 15 chr4 21392319 21392517 -180935830 + L3 LINE CR1 1094 1291 -286 27 0 0 0 chr4 21393234 21393261 -180935086 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr4 21394672 21394706 -180933641 + AT_rich Low_complexity Low_complexity 1 34 0 2431 88 0 0 chr4 21395579 21395885 -180932462 - AluSp SINE Alu -7 306 1 21 57 0 0 chr4 21396775 21396810 -180931537 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 21397628 21397650 -180930697 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 21397957 21397979 -180930368 + AT_rich Low_complexity Low_complexity 1 22 0 222 278 0 0 chr4 21398075 21398129 -180930218 + (CA)n Simple_repeat Simple_repeat 1 54 0 28 29 0 0 chr4 21398676 21398711 -180929636 + AT_rich Low_complexity Low_complexity 1 35 0 190 255 64 0 chr4 21399882 21399929 -180928418 - L2 LINE L2 -2 3270 3221 21 36 0 0 chr4 21400532 21400560 -180927787 + AT_rich Low_complexity Low_complexity 1 28 0 210 267 107 69 chr4 21401580 21401711 -180926636 + L2 LINE L2 3178 3313 0 223 204 20 0 chr4 21401765 21401814 -180926533 + GA-rich Low_complexity Low_complexity 2 51 0 243 273 78 7 chr4 21401924 21402051 -180926296 + MLT1I LTR MaLR 22 168 -241 327 315 19 9 chr4 21402114 21402222 -180926125 + MLT1G1 LTR MaLR 246 354 -241 261 238 4 26 chr4 21402309 21402397 -180925950 + MLT1H1 LTR MaLR 491 584 -6 2188 100 7 0 chr4 21403089 21403414 -180924933 + AluSx SINE Alu 3 329 0 180 333 48 38 chr4 21404182 21404287 -180924060 + L2 LINE L2 2920 3025 -247 28 29 0 0 chr4 21404401 21404436 -180923911 + AT_rich Low_complexity Low_complexity 1 35 0 251 178 0 14 chr4 21404504 21404577 -180923770 + CT-rich Low_complexity Low_complexity 1 72 0 891 174 0 0 chr4 21404614 21404792 -180923555 + CT-rich Low_complexity Low_complexity 3 180 0 1383 188 29 11 chr4 21404798 21405070 -180923277 - AluJo SINE Alu -35 277 1 494 261 75 49 chr4 21405191 21405417 -180922930 - MIR SINE MIR -6 256 25 189 371 52 21 chr4 21405444 21405541 -180922806 - L2 LINE L2 -32 3281 3182 456 297 51 29 chr4 21405981 21406156 -180922191 + MIR SINE MIR 14 192 -70 2525 58 0 6 chr4 21407261 21407572 -180920775 - AluY SINE Alu -2 309 1 1465 209 3 17 chr4 21408404 21408700 -180919647 - AluJo SINE Alu -20 292 1 23 68 0 0 chr4 21409949 21409993 -180918354 + AT_rich Low_complexity Low_complexity 1 44 0 2228 119 3 7 chr4 21410003 21410313 -180918034 + AluSc SINE Alu 1 309 0 2458 173 9 2 chr4 21410630 21411051 -180917296 - MSTB LTR MaLR 0 426 3 1748 151 63 3 chr4 21411128 21411446 -180916901 - MER1B DNA MER1_type 0 337 1 298 326 118 7 chr4 21411626 21411761 -180916586 + MIR SINE MIR 1 150 -112 331 273 71 10 chr4 21411942 21412041 -180916306 - L2 LINE L2 -18 3295 3191 345 292 79 39 chr4 21412202 21412507 -180915840 + L1M4 LINE L1 5266 5582 -596 38 0 0 0 chr4 21412516 21412554 -180915793 + AT_rich Low_complexity Low_complexity 1 38 0 31 26 0 0 chr4 21414141 21414179 -180914168 + AT_rich Low_complexity Low_complexity 1 38 0 352 263 139 7 chr4 21415022 21415159 -180913188 + MIR SINE MIR 37 191 -71 230 246 18 0 chr4 21417149 21417206 -180911141 + L2 LINE L2 3256 3313 0 201 59 88 0 chr4 21417312 21417346 -180911001 + A-rich Low_complexity Low_complexity 2 38 0 302 257 51 105 chr4 21417829 21417982 -180910365 + MIR SINE MIR 16 158 -61 1516 142 150 0 chr4 21418392 21418672 -180909675 + AluSx SINE Alu 1 317 0 573 207 25 0 chr4 21419383 21419504 -180908843 + MER5A DNA MER1_type 1 124 -65 1531 142 40 98 chr4 21419665 21420011 -180908336 - MER4A LTR ERV1 0 664 339 311 292 10 10 chr4 21420489 21420585 -180907762 - MIR SINE MIR -50 212 117 222 302 0 16 chr4 21421345 21421408 -180906939 + L2 LINE L2 3203 3264 -8 796 205 49 19 chr4 21422063 21422268 -180906079 + L1MA8 LINE L1 6059 6269 -22 620 182 12 73 chr4 21422272 21422379 -180905968 + L1MA10 LINE L1 6170 6265 -69 331 66 279 0 chr4 21422379 21422440 -180905907 + MADE1 DNA Mariner 3 80 0 620 182 12 73 chr4 21422440 21422497 -180905850 + L1MA10 LINE L1 6265 6324 -10 305 285 32 32 chr4 21422527 21422650 -180905697 + CT-rich Low_complexity Low_complexity 5 127 0 216 0 0 0 chr4 21424258 21424282 -180904065 + (T)n Simple_repeat Simple_repeat 1 24 0 184 352 0 0 chr4 21424631 21424702 -180903645 + L2 LINE L2 2200 2270 -1044 21 57 0 0 chr4 21425203 21425238 -180903109 + AT_rich Low_complexity Low_complexity 1 35 0 251 226 0 65 chr4 21426368 21426430 -180901917 + MER4-int LTR ERV1 1105 1162 -5436 287 297 38 65 chr4 21426651 21426836 -180901511 - L2 LINE L2 0 3313 3134 21 89 0 0 chr4 21426862 21426918 -180901429 + AT_rich Low_complexity Low_complexity 1 56 0 203 316 0 0 chr4 21427490 21427569 -180900778 + T-rich Low_complexity Low_complexity 1 79 0 225 242 53 53 chr4 21429019 21429114 -180899233 - MIR SINE MIR 0 262 168 1880 200 38 2 chr4 21429124 21429544 -180898803 - L1MB7 LINE L1 0 6184 5750 248 290 130 20 chr4 21429647 21429747 -180898600 - L2 LINE L2 -500 2814 2704 2159 109 7 10 chr4 21429764 21430066 -180898281 + AluSg SINE Alu 5 305 -5 2428 83 0 13 chr4 21430070 21430382 -180897965 + AluY SINE Alu 3 310 -1 239 321 68 39 chr4 21430441 21430796 -180897551 - L2 LINE L2 -907 2407 2043 2726 168 34 57 chr4 21430821 21431315 -180897032 - MER34C LTR ERV1 0 585 81 212 0 36 0 chr4 21431315 21431343 -180897004 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2726 168 34 57 chr4 21431343 21431409 -180896938 - MER34C LTR ERV1 -504 81 37 4441 72 7 93 chr4 21431409 21431542 -180896805 - MER4A LTR ERV1 0 664 521 2058 137 3 0 chr4 21431542 21431841 -180896506 - AluSx SINE Alu -12 300 1 4441 72 7 93 chr4 21431841 21432434 -180895913 - MER4A LTR ERV1 -143 521 1 2726 168 34 57 chr4 21432434 21432467 -180895880 - MER34C LTR ERV1 -548 37 5 404 222 9 19 chr4 21432762 21432870 -180895477 + MIR SINE MIR 150 256 -6 279 314 157 0 chr4 21432904 21433006 -180895341 + MIR3 SINE MIR 68 185 -23 216 0 0 0 chr4 21433192 21433216 -180895131 + (T)n Simple_repeat Simple_repeat 1 24 0 23 54 0 0 chr4 21434975 21435012 -180893335 + AT_rich Low_complexity Low_complexity 1 37 0 27 62 0 0 chr4 21435126 21435174 -180893173 + AT_rich Low_complexity Low_complexity 1 48 0 2182 114 0 7 chr4 21435490 21435787 -180892560 - AluSx SINE Alu -17 295 1 206 265 41 61 chr4 21436275 21436373 -180891974 + MER5A DNA MER1_type 3 98 -91 231 323 0 0 chr4 21436435 21436497 -180891850 + tRNA-Ser(Sec) tRNA tRNA 1 62 -28 380 261 185 32 chr4 21437102 21437259 -180891088 - MER91A DNA MER1_type -14 182 2 461 89 41 27 chr4 21438101 21438247 -180890100 + (TA)n Simple_repeat Simple_repeat 1 148 0 1658 177 6 22 chr4 21440697 21441013 -180887334 - AluJb SINE Alu -1 311 1 189 0 0 0 chr4 21441312 21441333 -180887014 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 183 326 0 0 chr4 21441563 21441609 -180886738 - L3 LINE CR1 -11 1566 1521 1904 166 0 10 chr4 21443202 21443498 -180884849 - AluJb SINE Alu -18 294 2 2217 113 0 0 chr4 21443523 21443816 -180884531 - AluSg SINE Alu -17 293 1 23 0 0 0 chr4 21443865 21443888 -180884459 + AT_rich Low_complexity Low_complexity 1 23 0 649 280 90 25 chr4 21444137 21444496 -180883851 - L1MC4a LINE L1 -360 5804 5518 1853 124 0 22 chr4 21444544 21444817 -180883530 - AluSx SINE Alu -45 267 1 210 207 35 0 chr4 21444892 21444950 -180883397 + T-rich Low_complexity Low_complexity 4 63 0 305 312 113 87 chr4 21445658 21446049 -180882298 - L2 LINE L2 -53 3219 2819 873 141 0 15 chr4 21446255 21446390 -180881957 - FLAM_C SINE Alu 0 133 1 2062 137 3 7 chr4 21446442 21446741 -180881606 - AluSx SINE Alu -14 298 1 281 253 91 30 chr4 21446779 21446878 -180881469 - L2 LINE L2 -7 3306 3202 346 165 25 0 chr4 21446931 21447010 -180881337 + CT-rich Low_complexity Low_complexity 3 83 0 2369 62 7 0 chr4 21447053 21447343 -180881004 - AluY SINE Alu -19 292 1 391 335 38 29 chr4 21448110 21448319 -180880028 - MIR SINE MIR -46 216 6 247 258 106 68 chr4 21449281 21449413 -180878934 + L2 LINE L2 3136 3272 0 1499 187 23 40 chr4 21449931 21450231 -180878116 - AluJo SINE Alu -17 295 1 877 164 8 0 chr4 21450297 21450431 -180877916 - AluJo SINE Alu -177 135 1 1268 240 25 21 chr4 21451170 21451495 -180876852 - MLT1A2 LTR MaLR -48 326 1 205 290 0 0 chr4 21451786 21451854 -180876493 - MIR SINE MIR -65 143 86 2476 81 0 3 chr4 21451867 21452177 -180876170 - AluSc SINE Alu 0 309 1 2204 91 0 20 chr4 21452386 21452684 -180875663 - AluY SINE Alu -19 292 1 1971 168 3 0 chr4 21454782 21455092 -180873255 - AluSx SINE Alu -1 311 1 3234 199 24 30 chr4 21455327 21455514 -180872833 + L1MB7 LINE L1 3153 3340 -2806 1573 187 28 11 chr4 21455514 21455647 -180872700 + AluJb SINE Alu 1 130 -182 2343 96 10 0 chr4 21455647 21455940 -180872407 + AluSx SINE Alu 1 296 -16 1573 187 28 11 chr4 21455940 21456090 -180872257 + AluJb SINE Alu 130 289 -23 3234 199 24 30 chr4 21456090 21456709 -180871638 + L1MB7 LINE L1 3340 3954 -2192 1359 185 37 63 chr4 21456718 21457127 -180871220 + MLT1C LTR MaLR 6 390 0 5061 145 30 1 chr4 21457127 21457941 -180870406 + L1MB7 LINE L1 5332 6168 -16 485 200 25 58 chr4 21458025 21458145 -180870202 - MER21B LTR ERV1 -364 499 384 441 76 0 0 chr4 21459242 21459308 -180869039 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 559 128 186 0 chr4 21459416 21459518 -180868829 - AluSq/x SINE Alu -191 122 2 355 255 136 66 chr4 21459529 21459759 -180868588 - L1ME4a LINE L1 0 6121 5909 698 183 0 23 chr4 21459759 21459890 -180868457 + FLAM_A SINE Alu 1 128 -5 355 255 136 66 chr4 21459890 21460065 -180868282 - L1ME4a LINE L1 -212 5909 5681 1936 138 0 10 chr4 21460143 21460434 -180867913 - AluSx SINE Alu -24 288 1 2002 96 0 0 chr4 21460441 21460691 -180867656 - AluSc SINE Alu -21 288 39 324 140 0 35 chr4 21461128 21461185 -180867162 + AluJo/FLAM SINE Alu 78 132 -170 1091 189 177 4 chr4 21461188 21461442 -180866905 + AluJo SINE Alu 2 299 -3 273 98 0 0 chr4 21461450 21461491 -180866856 + (GGGGA)n Simple_repeat Simple_repeat 3 43 0 204 231 0 0 chr4 21461494 21461533 -180866814 + GA-rich Low_complexity Low_complexity 1 39 0 2316 115 0 0 chr4 21462134 21462438 -180865909 - AluSx SINE Alu -8 304 1 3441 144 91 125 chr4 21463382 21464296 -180864051 - MER21A LTR ERV1 -36 895 13 226 100 20 0 chr4 21464292 21464311 -180864036 - LTR66 LTR ERVL -169 441 424 * 348 24 0 0 chr4 21464311 21464352 -180863995 + (TG)n Simple_repeat Simple_repeat 2 42 0 226 100 20 0 chr4 21464352 21464382 -180863965 - LTR66 LTR ERVL -186 424 391 2163 115 3 0 chr4 21464742 21465030 -180863317 + AluSp SINE Alu 3 291 -22 602 255 37 30 chr4 21465256 21465459 -180862888 - MIR SINE MIR 0 262 59 1772 119 51 34 chr4 21466371 21466666 -180861681 + AluSx SINE Alu 1 300 -12 243 250 80 20 chr4 21467309 21467409 -180860938 - L2 LINE L2 -25 3247 3142 647 281 30 0 chr4 21467871 21468070 -180860277 - MIR SINE MIR 0 262 58 1396 171 150 34 chr4 21468105 21468299 -180860048 - MLT1A1 LTR MaLR 0 365 195 2250 114 0 13 chr4 21468299 21468607 -180859740 - AluSx SINE Alu -8 304 1 1396 171 150 34 chr4 21468607 21468739 -180859608 - MLT1A1 LTR MaLR -170 195 1 2724 140 17 9 chr4 21469040 21469462 -180858885 + MER61B LTR ERV1 1 425 0 976 214 0 0 chr4 21469585 21469763 -180858584 - FRAM SINE Alu -1 175 1 621 298 18 22 chr4 21469912 21470140 -180858207 - MIR SINE MIR -12 250 24 429 264 134 19 chr4 21472262 21472478 -180855869 - MIR SINE MIR -10 252 12 1289 183 87 21 chr4 21473385 21473674 -180854673 + MER58B DNA MER1_type 28 335 -6 573 183 127 31 chr4 21473900 21473913 -180854434 - L1MA10 LINE L1 0 6317 6307 1692 161 24 13 chr4 21473913 21474211 -180854136 + AluJb SINE Alu 1 301 -11 573 183 127 31 chr4 21474211 21474418 -180853929 - L1MA10 LINE L1 -10 6307 5919 2603 141 12 73 chr4 21474501 21474916 -180853431 - MER101 LTR ERV1 0 474 94 1535 142 78 25 chr4 21474916 21475197 -180853150 - AluJb SINE Alu -16 296 1 2603 141 12 73 chr4 21475197 21475286 -180853061 - MER101 LTR ERV1 -380 94 1 1935 153 10 7 chr4 21475487 21475787 -180852560 - AluSx SINE Alu -11 301 1 2162 115 0 0 chr4 21475842 21476129 -180852218 - AluSx SINE Alu -25 287 1 1475 126 25 107 chr4 21476138 21476456 -180851891 + MLT1B LTR MaLR 13 496 -91 1001 202 68 65 chr4 21476571 21476893 -180851454 + L1MD2 LINE L1 6027 6349 -10 2975 141 69 20 chr4 21477190 21477529 -180850818 + Tigger3(Golem) DNA MER2_type 1 378 -2651 1912 150 0 14 chr4 21477529 21477844 -180850503 + AluJb SINE Alu 1 311 0 2975 141 69 20 chr4 21477844 21478041 -180850306 + Tigger3(Golem) DNA MER2_type 378 564 -2465 * 9527 107 64 12 chr4 21478037 21478735 -180849612 + Tigger3(Golem) DNA MER2_type 1470 2130 -899 2193 122 0 0 chr4 21478735 21479031 -180849316 - AluJb SINE Alu -16 296 1 9527 107 64 12 chr4 21479031 21479815 -180848532 + Tigger3(Golem) DNA MER2_type 2130 3029 0 1164 196 0 14 chr4 21479894 21480108 -180848239 + AluJo SINE Alu 1 211 -101 1981 180 24 3 chr4 21481116 21481450 -180846897 - MER58B DNA MER1_type 0 341 1 2348 82 0 7 chr4 21481821 21482114 -180846233 - AluY SINE Alu -20 291 1 232 326 65 11 chr4 21486217 21486309 -180842038 - MIR SINE MIR -157 105 9 247 256 128 96 chr4 21487509 21487674 -180840673 + HAL1 LINE L1 1161 1319 -1188 2343 92 7 0 chr4 21487674 21487977 -180840370 + AluSx SINE Alu 1 305 -7 247 256 128 96 chr4 21487977 21488181 -180840166 + HAL1 LINE L1 1319 1550 -957 2352 119 0 0 chr4 21488181 21488493 -180839854 + AluSx SINE Alu 1 312 0 247 256 128 96 chr4 21488493 21488582 -180839765 + HAL1 LINE L1 1550 1635 -872 1573 103 121 40 chr4 21488673 21488945 -180839402 + AluSg1 SINE Alu 3 296 -13 2103 118 14 3 chr4 21488987 21489283 -180839064 + AluSq SINE Alu 1 299 -14 452 284 129 64 chr4 21489890 21490058 -180838289 - HAL1 LINE L1 -629 1878 1722 2318 98 0 0 chr4 21490058 21490355 -180837992 - AluSg SINE Alu -13 297 1 452 284 129 64 chr4 21490355 21490636 -180837711 - HAL1 LINE L1 -785 1722 1400 513 83 42 21 chr4 21490638 21490782 -180837565 + (TA)n Simple_repeat Simple_repeat 2 148 0 418 274 47 102 chr4 21490786 21491384 -180836963 - HAL1 LINE L1 -1133 1374 810 1676 131 3 53 chr4 21491910 21492192 -180836155 - AluSq SINE Alu -45 268 1 23 0 0 0 chr4 21492353 21492376 -180835971 + AT_rich Low_complexity Low_complexity 1 23 0 304 311 15 8 chr4 21492659 21492791 -180835556 + MER5B DNA MER1_type 2 134 -44 2174 103 7 3 chr4 21493329 21493631 -180834716 + AluSx SINE Alu 6 308 -4 1217 142 18 36 chr4 21494383 21494602 -180833745 - L1MA5 LINE L1 -85 6215 6001 234 0 0 0 chr4 21495103 21495129 -180833218 + (CA)n Simple_repeat Simple_repeat 2 27 0 1828 139 20 20 chr4 21495290 21495462 -180832885 - AluJb SINE Alu -18 294 120 2121 97 73 0 chr4 21495462 21495750 -180832597 + AluSx SINE Alu 1 309 -3 1828 139 20 20 chr4 21495750 21495871 -180832476 - AluJb SINE Alu -191 121 1 327 232 22 103 chr4 21496188 21496373 -180831974 + MIR3 SINE MIR 30 199 -9 512 120 0 11 chr4 21496946 21497038 -180831309 + (CA)n Simple_repeat Simple_repeat 2 92 0 332 212 61 38 chr4 21497290 21497405 -180830942 + L1MC4a LINE L1 5874 5994 -1814 694 203 0 15 chr4 21497405 21497538 -180830809 + FLAM_A SINE Alu 1 131 -2 332 212 61 38 chr4 21497538 21497554 -180830793 + L1MC4a LINE L1 5994 6008 -1800 259 260 50 44 chr4 21497718 21497899 -180830448 - L1ME4a LINE L1 -58 6063 5882 545 263 20 40 chr4 21497953 21498026 -180830321 - L1ME4a LINE L1 -225 5896 5823 2173 133 0 0 chr4 21498026 21498327 -180830020 - AluSx SINE Alu -11 301 1 545 263 20 40 chr4 21498327 21498451 -180829896 - L1ME4a LINE L1 -298 5823 5703 494 91 0 0 chr4 21498451 21498528 -180829819 + Alu SINE Alu 234 310 -2 24 32 0 0 chr4 21499024 21499055 -180829292 + AT_rich Low_complexity Low_complexity 1 31 0 365 118 9 173 chr4 21499400 21499510 -180828837 - LTR9 LTR ERV1 -83 529 438 1926 139 17 0 chr4 21500304 21500592 -180827755 + AluSx SINE Alu 1 293 -19 1803 150 59 3 chr4 21500664 21500950 -180827397 - AluJb SINE Alu -8 304 3 33 0 0 0 chr4 21501117 21501150 -180827197 + AT_rich Low_complexity Low_complexity 1 33 0 2019 73 0 19 chr4 21501150 21501409 -180826938 - AluY SINE Alu -9 302 49 562 77 13 0 chr4 21501409 21501487 -180826860 - MSTA LTR MaLR -349 79 1 212 274 24 36 chr4 21501492 21501576 -180826771 + L2 LINE L2 1611 1693 -1621 2164 154 22 6 chr4 21502256 21502614 -180825733 + THE1B LTR MaLR 1 364 0 10105 108 35 39 chr4 21502614 21504199 -180824148 + THE1B-int LTR MaLR 1 1580 0 2089 159 31 6 chr4 21504203 21504554 -180823793 + THE1B LTR MaLR 5 364 0 2216 131 6 11 chr4 21504664 21505016 -180823331 - Tigger7 DNA MER2_type 0 2587 2238 744 195 0 0 chr4 21505013 21505131 -180823216 - Tigger7 DNA MER2_type -615 118 1 * 404 280 15 38 chr4 21505523 21505655 -180822692 - MIR SINE MIR -74 188 60 1853 161 49 20 chr4 21505658 21506041 -180822306 + MLT2B1 LTR ERVL 4 464 0 234 268 31 52 chr4 21507323 21507420 -180820927 - MIR SINE MIR -86 176 82 244 353 46 46 chr4 21508262 21508435 -180819912 + L2 LINE L2 2417 2589 -725 16554 181 5 11 chr4 21508435 21511508 -180816839 + HERVH LTR ERV1 4660 7713 0 579 219 0 39 chr4 21511842 21511997 -180816350 + LTR7 LTR ERV1 302 450 0 398 307 17 28 chr4 21512401 21512577 -180815770 + L2 LINE L2 3117 3290 -23 662 290 81 36 chr4 21512595 21512840 -180815507 - MIR SINE MIR -1 261 4 1141 235 24 8 chr4 21513048 21513299 -180815048 - AluJo SINE Alu -57 255 1 24 67 0 0 chr4 21513908 21513953 -180814394 + AT_rich Low_complexity Low_complexity 1 45 0 480 285 181 14 chr4 21514503 21514724 -180813623 + MIR SINE MIR 4 261 -1 2016 107 7 0 chr4 21515213 21515484 -180812863 + AluSq SINE Alu 38 310 -3 367 294 14 41 chr4 21515779 21515925 -180812422 + L1ME LINE L1 5518 5659 -462 420 223 48 0 chr4 21516592 21516695 -180811652 + MIR SINE MIR 82 189 -73 453 303 25 0 chr4 21516881 21517000 -180811347 - LTR16A LTR ERVL -88 362 241 4037 171 23 8 chr4 21517532 21518236 -180810111 - MER72 LTR ERV1 0 722 9 406 139 14 14 chr4 21518664 21518736 -180809611 + AluS SINE Alu 3 74 -237 2672 205 8 17 chr4 21518760 21519286 -180809061 - Tigger3b DNA MER2_type -703 528 8 27 62 0 0 chr4 21519754 21519802 -180808545 + AT_rich Low_complexity Low_complexity 1 48 0 337 293 98 46 chr4 21520198 21520505 -180807842 + L1M4 LINE L1 3166 3488 -2658 198 0 0 0 chr4 21520853 21520875 -180807472 + (T)n Simple_repeat Simple_repeat 1 22 0 420 323 35 28 chr4 21521106 21521360 -180806987 + L1M4 LINE L1 3589 3844 -2302 208 196 36 0 chr4 21521361 21521417 -180806930 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 230 264 184 24 chr4 21521428 21521500 -180806847 + L1M4 LINE L1 3859 3918 -2228 1365 241 22 17 chr4 21521500 21521857 -180806490 + MLT1A1 LTR MaLR 3 361 -4 230 264 184 24 chr4 21521857 21521996 -180806351 + L1M4 LINE L1 3918 4104 -2042 242 333 0 11 chr4 21522756 21522843 -180805504 + GA-rich Low_complexity Low_complexity 3 88 0 648 316 53 19 chr4 21523139 21523550 -180804797 - L1ME LINE L1 -417 5822 5398 320 315 98 33 chr4 21523553 21524004 -180804343 - L1ME LINE L1 -3265 2950 2471 349 271 113 30 chr4 21524236 21524439 -180803908 - L1ME LINE L1 -4144 2252 2033 288 0 0 0 chr4 21524512 21524544 -180803803 + (TC)n Simple_repeat Simple_repeat 1 32 0 35 24 0 0 chr4 21524979 21525021 -180803326 + AT_rich Low_complexity Low_complexity 1 42 0 369 329 27 27 chr4 21525040 21525162 -180803185 + MIR SINE MIR 19 143 -119 276 30 0 0 chr4 21525162 21525195 -180803152 + (TAA)n Simple_repeat Simple_repeat 3 35 0 369 329 27 27 chr4 21525195 21525218 -180803129 + MIR SINE MIR 142 164 -98 2409 116 50 31 chr4 21525463 21525885 -180802462 - MER57B LTR ERV1 0 434 5 301 295 9 0 chr4 21525889 21525994 -180802353 - L1ME LINE L1 -5308 897 792 487 372 26 50 chr4 21526236 21526618 -180801729 - L1ME LINE L1 -5746 459 87 828 264 98 37 chr4 21528811 21529159 -180799188 - L2 LINE L2 -56 3257 2889 658 313 48 46 chr4 21529156 21529407 -180798940 - L2 LINE L2 -861 2453 2199 * 225 0 0 0 chr4 21529407 21529432 -180798915 + (TG)n Simple_repeat Simple_repeat 2 26 0 658 313 48 46 chr4 21529432 21529531 -180798816 - L2 LINE L2 -1115 2199 2102 650 273 18 67 chr4 21529532 21529862 -180798485 + Charlie2 DNA MER1_type 9 322 -2540 592 264 124 8 chr4 21529869 21530119 -180798228 + Charlie2 DNA MER1_type 1870 2148 -714 695 240 77 139 chr4 21530130 21530647 -180797700 - L2 LINE L2 -1794 1520 1036 14645 167 19 11 chr4 21530740 21532478 -180795869 - L1MA3 LINE L1 0 7724 6002 2806 77 40 64 chr4 21532478 21532564 -180795783 - MLT2A1 LTR ERVL 0 444 357 207 0 0 0 chr4 21532564 21532587 -180795760 + (TA)n Simple_repeat Simple_repeat 2 24 0 2806 77 40 64 chr4 21532587 21532955 -180795392 - MLT2A1 LTR ERVL -87 357 1 14645 167 19 11 chr4 21532955 21536913 -180791434 - L1MA3 LINE L1 -1722 6002 1977 461 314 81 23 chr4 21536978 21537150 -180791197 + MIR SINE MIR 81 262 0 192 320 0 0 chr4 21537342 21537392 -180790955 - L2 LINE L2 -245 3027 2978 1693 194 3 3 chr4 21537482 21537776 -180790571 + AluJb SINE Alu 1 294 -18 21 36 0 0 chr4 21537781 21537809 -180790538 + AT_rich Low_complexity Low_complexity 1 28 0 1682 229 62 33 chr4 21538723 21539208 -180789139 + MLT1D LTR MaLR 5 503 -2 353 200 64 91 chr4 21540596 21540706 -180787641 - MLT1H LTR MaLR -27 522 409 904 269 9 0 chr4 21541033 21541249 -180787098 + MER8 DNA MER2_type 1 218 -21 1147 224 107 68 chr4 21542083 21542829 -180785518 + Zaphod DNA AcHobo 544 1318 -2713 1139 83 7 0 chr4 21542877 21543021 -180785326 - AluSp SINE Alu -168 145 1 1187 236 89 126 chr4 21543024 21543431 -180784916 + Zaphod DNA AcHobo 1545 1965 -2066 2127 112 0 3 chr4 21543431 21543740 -180784607 + AluY SINE Alu 1 308 0 1187 236 89 126 chr4 21543740 21544286 -180784061 + Zaphod DNA AcHobo 1965 2453 -1578 2430 72 0 0 chr4 21544286 21544579 -180783768 + AluSp SINE Alu 1 293 -20 1187 236 89 126 chr4 21544579 21544768 -180783579 + Zaphod DNA AcHobo 2453 2647 -1384 297 288 75 14 chr4 21544806 21544952 -180783395 + Zaphod DNA AcHobo 3005 3159 -872 547 109 16 78 chr4 21544952 21545080 -180783267 - L1MB8 LINE L1 0 6178 6059 2376 90 0 7 chr4 21545088 21545398 -180782949 - AluSp SINE Alu -5 308 1 3680 176 60 41 chr4 21545411 21546241 -180782106 - L1MB7 LINE L1 -7 6177 5332 1355 184 20 44 chr4 21546261 21546554 -180781793 - AluJo SINE Alu -26 286 1 1612 232 106 23 chr4 21546574 21547307 -180781040 + Zaphod DNA AcHobo 3150 3943 -88 24 53 0 0 chr4 21547307 21547345 -180781002 + AT_rich Low_complexity Low_complexity 1 38 0 959 284 113 11 chr4 21548345 21548715 -180779632 + MLT1I LTR MaLR 2 409 0 197 176 0 20 chr4 21549522 21549573 -180778774 + (TA)n Simple_repeat Simple_repeat 2 51 0 402 247 10 0 chr4 21550278 21550375 -180777972 - L1MD2 LINE L1 -14 6345 6248 383 232 24 0 chr4 21550431 21550513 -180777834 + MER5B DNA MER1_type 2 85 -93 1232 249 76 32 chr4 21550525 21550935 -180777412 + MLT2B1 LTR ERVL 1 428 -92 30 97 0 0 chr4 21551004 21551097 -180777250 + AT_rich Low_complexity Low_complexity 1 93 0 235 191 29 15 chr4 21551101 21551169 -180777178 + MLT2A1 LTR ERVL 368 436 -8 253 299 30 0 chr4 21551173 21551240 -180777107 + MER5B DNA MER1_type 103 171 -7 300 102 0 0 chr4 21551286 21551335 -180777012 + (TG)n Simple_repeat Simple_repeat 2 50 0 324 260 73 0 chr4 21551983 21552079 -180776268 - MLT1J2 LTR MaLR -323 127 25 756 252 128 4 chr4 21552515 21552741 -180775606 - MIR SINE MIR -4 258 5 472 242 67 0 chr4 21552777 21552897 -180775450 - L1MD2 LINE L1 -16 6343 6216 2513 243 23 17 chr4 21552964 21553609 -180774738 - L1MD2 LINE L1 -279 6080 5432 243 322 34 35 chr4 21553662 21553853 -180774494 + MIR SINE MIR 34 222 -40 1155 179 40 10 chr4 21553891 21554056 -180774291 - AluJb SINE Alu -17 295 121 243 0 0 0 chr4 21554056 21554083 -180774264 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1155 179 40 10 chr4 21554083 21554118 -180774229 - AluJb SINE Alu -191 121 89 322 302 24 8 chr4 21554335 21554461 -180773886 - MIR3 SINE MIR -5 203 76 1164 263 76 3 chr4 21555057 21555251 -180773096 - L1MD2 LINE L1 -21 6338 6160 231 36 0 0 chr4 21555251 21555279 -180773068 + (TG)n Simple_repeat Simple_repeat 2 29 0 1164 263 76 3 chr4 21555279 21555453 -180772894 - L1MD2 LINE L1 -199 6160 5943 1647 134 46 31 chr4 21555538 21555799 -180772548 - AluSx SINE Alu -6 306 42 2848 190 48 17 chr4 21555801 21556582 -180771765 - L1MDa LINE L1 -3819 2721 1917 1375 246 33 33 chr4 21556579 21556978 -180771369 - L1MDa LINE L1 -5359 1184 786 * 291 289 117 0 chr4 21557159 21557287 -180771060 - L1MDa LINE L1 -6319 221 79 194 197 43 128 chr4 21557327 21557444 -180770903 - MIR SINE MIR -32 230 124 620 249 122 33 chr4 21558274 21558487 -180769860 + MIR SINE MIR 31 262 0 181 138 0 0 chr4 21558480 21558509 -180769838 - MIR SINE MIR -108 154 126 * 1112 229 62 43 chr4 21558819 21559190 -180769157 + MER58D DNA MER1_type 1 378 -8 615 341 67 5 chr4 21559975 21560198 -180768149 + MIR SINE MIR 26 262 0 254 308 84 42 chr4 21560198 21560341 -180768006 - MIR3 SINE MIR -17 191 43 212 313 40 10 chr4 21560678 21560777 -180767570 - MIR SINE MIR -3 259 158 776 246 11 11 chr4 21561129 21561316 -180767031 - MER5A DNA MER1_type -1 188 2 242 281 18 18 chr4 21561563 21561620 -180766727 + MIR SINE MIR 30 86 -122 23 0 0 0 chr4 21562759 21562782 -180765565 + AT_rich Low_complexity Low_complexity 1 23 0 181 171 171 0 chr4 21563409 21563444 -180764903 - L2 LINE L2 -31 3282 3242 240 100 0 0 chr4 21564697 21564737 -180763610 + (CGG)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr4 21569460 21569481 -180758866 + AT_rich Low_complexity Low_complexity 1 21 0 222 233 192 0 chr4 21570322 21570395 -180757952 - MER5A DNA MER1_type -77 112 26 24 67 0 0 chr4 21571068 21571113 -180757234 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr4 21571550 21571582 -180756765 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr4 21572714 21572744 -180755603 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 21573159 21573187 -180755160 + AT_rich Low_complexity Low_complexity 1 28 0 295 345 18 0 chr4 21573556 21573669 -180754678 + CT-rich Low_complexity Low_complexity 5 119 0 340 302 124 7 chr4 21576348 21576517 -180751830 + MIR SINE MIR 66 252 -10 24 53 0 0 chr4 21576872 21576910 -180751437 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr4 21577934 21577963 -180750384 + AT_rich Low_complexity Low_complexity 1 29 0 300 315 28 0 chr4 21578681 21578789 -180749558 + MIR SINE MIR 128 238 -24 286 314 132 66 chr4 21579344 21579678 -180748669 - L2 LINE L2 -36 3236 2881 450 347 139 24 chr4 21580179 21580467 -180747880 - L3 LINE CR1 -15 1562 1242 347 132 59 7 chr4 21584056 21584208 -180744139 + (TA)n Simple_repeat Simple_repeat 1 160 0 423 250 23 17 chr4 21585898 21586070 -180742277 - L1ME4a LINE L1 0 6121 5949 215 290 14 14 chr4 21586109 21586178 -180742169 + L2 LINE L2 3203 3271 -1 254 348 25 8 chr4 21587966 21588084 -180740263 + MIR SINE MIR 52 171 -91 32 0 0 0 chr4 21588691 21588723 -180739624 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 21589055 21589076 -180739271 + AT_rich Low_complexity Low_complexity 1 21 0 35 0 0 0 chr4 21590059 21590094 -180738253 + AT_rich Low_complexity Low_complexity 1 35 0 700 223 13 6 chr4 21590428 21590585 -180737762 + Tigger3(Golem) DNA MER2_type 128 285 -2744 503 148 159 0 chr4 21590687 21590775 -180737572 - AluJb SINE Alu -208 104 3 2502 53 0 28 chr4 21590960 21591280 -180737067 - AluY SINE Alu 0 311 1 1939 136 14 0 chr4 21591706 21591992 -180736355 - AluSx SINE Alu -22 290 1 210 118 0 0 chr4 21592313 21592347 -180736000 + (A)n Simple_repeat Simple_repeat 1 34 0 839 194 0 0 chr4 21592499 21592667 -180735680 + AluJb SINE Alu 138 305 0 2000 122 37 0 chr4 21592683 21592978 -180735369 - AluSx SINE Alu -6 306 1 223 229 76 28 chr4 21593130 21593307 -180735040 - MIR SINE MIR -12 250 20 380 99 254 0 chr4 21593587 21593658 -180734689 + AluJb SINE Alu 213 301 -1 2034 134 0 0 chr4 21593745 21594057 -180734290 + AluSq SINE Alu 1 312 0 897 220 5 0 chr4 21594330 21594521 -180733826 + L1PBa LINE L1 6 197 -6666 * 9063 156 46 4 chr4 21594518 21595844 -180732503 + L1PBa LINE L1 1392 2661 -4201 180 0 0 0 chr4 21595844 21595864 -180732483 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 9063 156 46 4 chr4 21595864 21597285 -180731062 + L1PBa LINE L1 2661 4258 -2604 476 163 38 3 chr4 21647482 21647586 -180680761 - L1MC2 LINE L1 0 6333 6226 193 262 0 0 chr4 21647605 21647647 -180680700 - L3 LINE CR1 -480 1097 1056 40 37 0 0 chr4 21648880 21648934 -180679413 + AT_rich Low_complexity Low_complexity 1 54 0 25 65 0 0 chr4 21649007 21649053 -180679294 + AT_rich Low_complexity Low_complexity 1 46 0 744 262 37 0 chr4 21649121 21649308 -180679039 + MIR SINE MIR 32 225 -37 408 353 140 39 chr4 21649986 21650558 -180677789 - L2 LINE L2 -618 2696 2067 456 252 129 7 chr4 21651497 21651652 -180676695 + MIR SINE MIR 83 256 -6 35 41 0 0 chr4 21651708 21651757 -180676590 + AT_rich Low_complexity Low_complexity 1 49 0 180 322 35 35 chr4 21651941 21652028 -180676319 - MIR SINE MIR -156 106 20 22 56 0 0 chr4 21652689 21652725 -180675622 + AT_rich Low_complexity Low_complexity 1 36 0 213 65 0 0 chr4 21653397 21653428 -180674919 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 180 77 0 0 chr4 21653676 21653702 -180674645 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 427 289 223 9 chr4 21654123 21654334 -180674013 + MIR SINE MIR 7 262 0 32 0 0 0 chr4 21655207 21655239 -180673108 + AT_rich Low_complexity Low_complexity 1 32 0 1144 264 53 52 chr4 21655483 21656345 -180672002 + L1ME LINE L1 4888 5759 -411 6469 84 10 37 chr4 21657670 21658840 -180669507 - L1PA11 LINE L1 -8 6166 5029 2420 76 6 22 chr4 21658840 21659155 -180669192 - AluSx SINE Alu -2 310 1 6469 84 10 37 chr4 21659155 21659772 -180668575 - L1PA11 LINE L1 -1145 5029 4397 506 280 33 22 chr4 21659914 21660096 -180668251 - MIR SINE MIR -64 198 15 434 296 43 37 chr4 21660149 21660311 -180668036 - MIR SINE MIR -93 169 7 180 154 0 0 chr4 21660319 21660345 -180668002 + L2 LINE L2 3263 3288 -25 709 199 11 11 chr4 21661249 21661425 -180666922 - L1MB7 LINE L1 -1 6183 6008 264 260 65 0 chr4 21661428 21661505 -180666842 - L1M4 LINE L1 -1242 5140 5059 746 253 12 8 chr4 21661512 21661757 -180666590 - L1M4 LINE L1 -1437 4945 4700 * 1812 234 111 61 chr4 21661726 21663641 -180664706 - L1M4 LINE L1 -3143 3239 1221 2502 59 0 0 chr4 21663731 21664035 -180664312 + AluY SINE Alu 1 304 -7 296 166 0 70 chr4 21664337 21664428 -180663919 - MIR SINE MIR -23 185 106 1472 182 101 46 chr4 21664746 21665114 -180663233 - MLT1B LTR MaLR 0 390 3 232 328 39 42 chr4 21665605 21665741 -180662606 + MIR SINE MIR 14 153 -55 183 156 0 0 chr4 21666019 21666051 -180662296 + (TA)n Simple_repeat Simple_repeat 2 33 0 229 300 0 0 chr4 21666051 21666141 -180662206 - L1MC4 LINE L1 -1339 6703 6614 1904 100 8 0 chr4 21666148 21666397 -180661950 - AluSc SINE Alu -36 273 23 189 296 93 68 chr4 21666398 21666678 -180661669 + L2 LINE L2 2946 3232 -81 31 26 0 0 chr4 21667873 21667911 -180660436 + AT_rich Low_complexity Low_complexity 1 38 0 475 338 48 13 chr4 21668095 21668269 -180660078 + MIR SINE MIR 21 206 -56 387 0 0 0 chr4 21668269 21668312 -180660035 + (TG)n Simple_repeat Simple_repeat 2 44 0 475 338 48 13 chr4 21668312 21668365 -180659982 + MIR SINE MIR 206 256 -6 243 270 48 0 chr4 21668982 21669045 -180659302 - L2 LINE L2 0 3313 3248 25 0 0 0 chr4 21669076 21669101 -180659246 + AT_rich Low_complexity Low_complexity 1 25 0 261 295 124 0 chr4 21669116 21669221 -180659126 - MIR SINE MIR -50 212 95 277 207 24 12 chr4 21669225 21669307 -180659040 + GA-rich Low_complexity Low_complexity 3 85 0 1451 234 39 12 chr4 21669309 21669642 -180658705 + MLT1A2 LTR MaLR 33 374 0 283 159 0 58 chr4 21671049 21671118 -180657229 + MER116 DNA Mariner 11 75 -5 358 291 250 16 chr4 21671130 21671446 -180656901 - L2 LINE L2 -94 3219 2830 28 0 0 0 chr4 21672026 21672054 -180656293 + AT_rich Low_complexity Low_complexity 1 28 0 229 147 0 0 chr4 21673932 21673993 -180654354 + Alu SINE Alu 247 307 0 372 269 65 0 chr4 21674660 21674753 -180653594 + L2 LINE L2 3142 3240 -32 439 322 71 0 chr4 21675412 21675595 -180652752 - MIR SINE MIR -62 200 5 536 310 132 53 chr4 21677992 21678530 -180649817 - L2 LINE L2 -1 3312 2734 252 0 0 0 chr4 21679981 21680009 -180648338 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 201 74 0 0 chr4 21680537 21680564 -180647783 + (TC)n Simple_repeat Simple_repeat 2 28 0 201 197 0 0 chr4 21680563 21680629 -180647718 + (TG)n Simple_repeat Simple_repeat 1 66 0 213 65 0 0 chr4 21680662 21680693 -180647654 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr4 21681124 21681145 -180647202 + AT_rich Low_complexity Low_complexity 1 21 0 2300 92 7 3 chr4 21682806 21683112 -180645235 + AluSp SINE Alu 1 307 -6 197 402 10 0 chr4 21683351 21683448 -180644899 - L2 LINE L2 -666 2648 2551 312 281 96 15 chr4 21683607 21683742 -180644605 - L1ME LINE L1 -336 5785 5640 187 295 144 22 chr4 21683887 21684026 -180644321 - L2 LINE L2 -11 3302 3147 197 200 0 0 chr4 21684594 21684634 -180643713 - L2 LINE L2 -20 3252 3213 785 284 18 0 chr4 21685208 21685426 -180642921 + MER58A DNA MER1_type 3 224 0 385 230 11 11 chr4 21685564 21685651 -180642696 + MIR SINE MIR 165 251 -11 2076 268 73 39 chr4 21685662 21685933 -180642414 + L2 LINE L2 2170 2430 -883 1561 204 3 3 chr4 21685933 21686222 -180642125 + AluJb SINE Alu 1 289 -23 2529 67 0 10 chr4 21686231 21686544 -180641803 + AluY SINE Alu 1 310 -1 2076 268 73 39 chr4 21686544 21686835 -180641512 + L2 LINE L2 2437 2717 -596 2216 129 25 25 chr4 21686835 21687199 -180641148 - THE1B LTR MaLR 0 364 1 2076 268 73 39 chr4 21687199 21687715 -180640632 + L2 LINE L2 2717 3309 -4 1987 184 54 31 chr4 21687843 21688289 -180640058 - MLT1C LTR MaLR 0 467 12 279 360 117 9 chr4 21688392 21688503 -180639844 - L2 LINE L2 -16 3256 3134 374 114 14 0 chr4 21690085 21690155 -180638192 + (TC)n Simple_repeat Simple_repeat 2 72 0 21 36 0 0 chr4 21690537 21690565 -180637782 + AT_rich Low_complexity Low_complexity 1 28 0 2482 59 0 16 chr4 21690838 21691144 -180637203 + AluY SINE Alu 1 301 -10 243 0 0 0 chr4 21692183 21692210 -180636137 + (A)n Simple_repeat Simple_repeat 1 27 0 213 267 44 0 chr4 21692265 21692310 -180636037 - L2 LINE L2 -23 3290 3244 189 346 0 0 chr4 21694381 21694433 -180633914 + MIR SINE MIR 49 100 -162 315 261 134 28 chr4 21694593 21694735 -180633612 - L3b LINE CR1 -248 1335 1179 1789 147 3 64 chr4 21696907 21697221 -180631126 - AluSx SINE Alu -17 295 1 2280 104 0 0 chr4 21697238 21697536 -180630811 - AluSc SINE Alu -11 298 1 33 56 0 0 chr4 21697657 21697711 -180630636 + AT_rich Low_complexity Low_complexity 1 54 0 2340 94 7 0 chr4 21698000 21698307 -180630040 - AluSg SINE Alu -1 309 1 195 213 85 0 chr4 21700826 21700873 -180627474 + L2 LINE L2 3201 3251 -62 * 376 287 84 6 chr4 21700859 21701026 -180627321 + MIR SINE MIR 61 240 -22 566 246 69 69 chr4 21702058 21702261 -180626086 - MIR SINE MIR -2 260 58 518 299 161 0 chr4 21702362 21702579 -180625768 - MIR SINE MIR -8 254 3 23 0 0 0 chr4 21703359 21703382 -180624965 + AT_rich Low_complexity Low_complexity 1 23 0 757 163 36 18 chr4 21704143 21704417 -180623930 + L1MB7 LINE L1 5748 6172 -12 266 385 37 15 chr4 21705949 21706084 -180622263 - L2 LINE L2 -219 3053 2916 22 0 0 0 chr4 21706101 21706123 -180622224 + AT_rich Low_complexity Low_complexity 1 22 0 183 354 131 8 chr4 21706259 21706389 -180621958 + L2 LINE L2 3118 3263 -9 229 275 37 64 chr4 21706491 21706600 -180621747 - MIR SINE MIR -72 190 85 538 143 0 0 chr4 21706742 21706826 -180621521 + L1MB3 LINE L1 6075 6158 -25 381 286 36 54 chr4 21707015 21707183 -180621164 + MER5A DNA MER1_type 1 165 -24 * 450 301 31 25 chr4 21707050 21707213 -180621134 - MER5A DNA MER1_type -23 166 3 483 281 156 18 chr4 21707288 21707512 -180620835 + MIR SINE MIR 2 256 -6 2210 107 3 3 chr4 21708464 21708763 -180619584 - AluSx SINE Alu -13 299 1 28 48 0 0 chr4 21708923 21708965 -180619382 + AT_rich Low_complexity Low_complexity 1 42 0 1420 169 31 36 chr4 21708968 21709339 -180619008 - L1MA8 LINE L1 -22 6269 5912 697 92 10 0 chr4 21709337 21709435 -180618912 + L1MA7 LINE L1 5853 5951 -340 * 279 319 73 5 chr4 21709598 21709721 -180618626 - MIR SINE MIR -64 144 49 1000 320 131 16 chr4 21709892 21710463 -180617884 - L2 LINE L2 -353 2961 2325 238 319 117 33 chr4 21710463 21710676 -180617671 - L2 LINE L2 -649 2665 2435 911 309 8 4 chr4 21711548 21711794 -180616553 - MIR SINE MIR -6 256 10 435 231 0 0 chr4 21712049 21712157 -180616190 + (TA)n Simple_repeat Simple_repeat 2 109 0 2277 90 0 7 chr4 21712193 21712494 -180615853 + AluY SINE Alu 1 299 -12 310 279 31 93 chr4 21713865 21714026 -180614321 + MIR SINE MIR 106 256 -6 23 33 0 0 chr4 21714809 21714839 -180613508 + AT_rich Low_complexity Low_complexity 1 30 0 31 26 0 0 chr4 21716163 21716201 -180612146 + AT_rich Low_complexity Low_complexity 1 38 0 2138 108 7 3 chr4 21718357 21718654 -180609693 - AluSx SINE Alu -14 298 1 387 0 0 0 chr4 21719084 21719127 -180609220 + (TG)n Simple_repeat Simple_repeat 2 44 0 1966 108 0 0 chr4 21719158 21719444 -180608903 - AluSx SINE Alu 0 311 26 188 331 66 70 chr4 21720385 21720627 -180607720 - L3b LINE CR1 -57 1526 1286 540 97 0 0 chr4 21720821 21720914 -180607433 + (TA)n Simple_repeat Simple_repeat 2 94 0 2018 106 10 30 chr4 21725458 21725761 -180602586 - AluSq SINE Alu -16 297 1 22 0 0 0 chr4 21729433 21729455 -180598892 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr4 21731044 21731071 -180597276 + AT_rich Low_complexity Low_complexity 1 27 0 32 0 0 0 chr4 21732163 21732195 -180596152 + AT_rich Low_complexity Low_complexity 1 32 0 351 332 96 5 chr4 21732944 21733143 -180595204 + Charlie8 DNA MER1_type 59 275 -2142 260 345 109 0 chr4 21733530 21733649 -180594698 + L2 LINE L2 3141 3272 0 188 108 0 27 chr4 21733651 21733688 -180594659 + (TAA)n Simple_repeat Simple_repeat 1 36 0 27 29 0 0 chr4 21735344 21735378 -180592969 + AT_rich Low_complexity Low_complexity 1 34 0 2010 149 0 0 chr4 21737763 21738065 -180590282 + AluSp SINE Alu 1 302 -11 2311 67 0 3 chr4 21738067 21738391 -180589956 + AluY SINE Alu 1 323 0 230 234 0 0 chr4 21738626 21738673 -180589674 + (CA)n Simple_repeat Simple_repeat 2 48 0 209 179 0 36 chr4 21738679 21738735 -180589612 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr4 21738977 21738998 -180589349 + AT_rich Low_complexity Low_complexity 1 21 0 344 266 35 35 chr4 21741860 21741973 -180586374 + MIR SINE MIR 33 145 -117 386 342 118 57 chr4 21742234 21742756 -180585591 - L2 LINE L2 -456 2858 2284 2250 81 3 10 chr4 21742756 21743054 -180585293 + AluY SINE Alu 1 296 -15 386 342 118 57 chr4 21743054 21743210 -180585137 - L2 LINE L2 -1030 2284 2139 510 268 12 42 chr4 21744885 21745053 -180583294 + L2 LINE L2 3150 3312 -1 216 0 0 0 chr4 21746127 21746151 -180582196 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2120 107 0 7 chr4 21746153 21746461 -180581886 + AluSc SINE Alu 4 309 0 3041 135 85 19 chr4 21746966 21747600 -180580747 - L1PB4 LINE L1 -291 5865 5184 1983 96 22 0 chr4 21747738 21748036 -180580311 - AluY SINE Alu 0 309 6 23 54 0 0 chr4 21748871 21748908 -180579439 + AT_rich Low_complexity Low_complexity 1 37 0 1692 156 25 0 chr4 21749565 21749841 -180578506 - AluSx SINE Alu -28 284 2 187 273 23 0 chr4 21750640 21750684 -180577663 - L2 LINE L2 -8 3305 3261 1346 146 204 0 chr4 21753016 21753296 -180575051 + MER44D DNA MER2_type 1 607 -2 452 322 40 17 chr4 21753424 21753601 -180574746 - MIR SINE MIR -70 192 12 25 0 0 0 chr4 21755016 21755041 -180573306 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr4 21755617 21755646 -180572701 + AT_rich Low_complexity Low_complexity 1 29 0 182 360 45 54 chr4 21755820 21755931 -180572416 + L2 LINE L2 3163 3272 0 341 328 23 0 chr4 21756660 21756837 -180571510 + L1ME4a LINE L1 5742 5922 -199 222 118 0 0 chr4 21757273 21757307 -180571040 + (TG)n Simple_repeat Simple_repeat 2 35 0 281 174 14 0 chr4 21757378 21757447 -180570900 + (TA)n Simple_repeat Simple_repeat 2 71 0 397 264 66 84 chr4 21757570 21757894 -180570453 - LTR33A LTR ERVL -174 347 23 25 65 0 0 chr4 21759486 21759532 -180568815 + AT_rich Low_complexity Low_complexity 1 46 0 2153 81 3 75 chr4 21759666 21760000 -180568347 - AluY SINE Alu -1 310 1 207 0 0 0 chr4 21760638 21760661 -180567686 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 624 299 73 59 chr4 21761781 21762219 -180566128 - L2 LINE L2 -9 3304 2861 279 0 0 0 chr4 21762516 21762547 -180565800 + (TA)n Simple_repeat Simple_repeat 2 32 0 2683 13 0 6 chr4 21762552 21762864 -180565483 - AluY SINE Alu -1 310 1 240 162 73 29 chr4 21763121 21763189 -180565158 + L1ME4a LINE L1 6051 6121 0 21 36 0 0 chr4 21763309 21763337 -180565010 + AT_rich Low_complexity Low_complexity 1 28 0 2160 51 4 11 chr4 21763743 21764017 -180564330 + AluY SINE Alu 35 306 -5 427 258 131 35 chr4 21764603 21764832 -180563515 + MER112 DNA MER1_type 8 258 -2 291 188 135 21 chr4 21766650 21766746 -180561601 + MER103 DNA DNA 13 119 -47 242 189 0 57 chr4 21766755 21766808 -180561539 - L2 LINE L2 -4 3268 3219 614 296 86 0 chr4 21767098 21767341 -180561006 - L2 LINE L2 -389 2925 2662 2017 107 10 3 chr4 21771254 21771545 -180556802 - AluY SINE Alu -18 293 1 23 0 0 0 chr4 21771635 21771658 -180556689 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 21772580 21772610 -180555737 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr4 21773138 21773177 -180555170 + AT_rich Low_complexity Low_complexity 1 39 0 196 255 78 0 chr4 21773615 21773666 -180554681 + L2 LINE L2 3209 3263 -9 217 246 73 64 chr4 21773856 21773966 -180554381 + L2 LINE L2 3160 3270 -43 1637 169 3 45 chr4 21774235 21774543 -180553804 - AluJb SINE Alu -17 295 1 31 0 0 0 chr4 21774634 21774665 -180553682 + AT_rich Low_complexity Low_complexity 1 31 0 3672 220 57 7 chr4 21774669 21775590 -180552757 + L1MB7 LINE L1 5213 6179 -5 235 200 0 31 chr4 21775611 21775676 -180552671 + MER106B DNA MER1_type 992 1054 -5 212 167 0 0 chr4 21776819 21776855 -180551492 - L2 LINE L2 -7 3306 3271 227 58 39 39 chr4 21777811 21777863 -180550484 + (CA)n Simple_repeat Simple_repeat 2 53 0 2208 117 0 0 chr4 21779000 21779300 -180549047 + AluSg SINE Alu 3 302 -8 881 255 8 35 chr4 21779526 21779839 -180548508 - MLT1B LTR MaLR -12 374 71 6112 127 56 56 chr4 21779846 21780166 -180548181 - Tigger3b DNA MER2_type -1824 1204 885 188 67 33 0 chr4 21780166 21780196 -180548151 + (TGAG)n Simple_repeat Simple_repeat 1 31 0 6112 127 56 56 chr4 21780196 21780253 -180548094 - Tigger3b DNA MER2_type -2143 885 829 2308 97 0 6 chr4 21780253 21780564 -180547783 + AluSq SINE Alu 1 309 -4 6112 127 56 56 chr4 21780564 21781390 -180546957 - Tigger3b DNA MER2_type -2199 829 1 350 147 132 0 chr4 21781390 21781458 -180546889 - MLT1B LTR MaLR -313 77 1 2192 75 0 4 chr4 21781934 21782238 -180546109 - AluY SINE Alu 0 304 2 24 53 0 0 chr4 21783605 21783643 -180544704 + AT_rich Low_complexity Low_complexity 1 38 0 30 0 0 0 chr4 21783705 21783735 -180544612 + AT_rich Low_complexity Low_complexity 1 30 0 2074 128 0 13 chr4 21783980 21784286 -180544061 + AluSx SINE Alu 1 302 -10 186 43 0 0 chr4 21784471 21784494 -180543853 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 202 192 50 101 chr4 21785971 21786070 -180542277 - MIR SINE MIR -41 221 128 378 0 0 0 chr4 21786791 21786833 -180541514 + (TG)n Simple_repeat Simple_repeat 1 42 0 329 287 0 11 chr4 21786833 21786927 -180541420 + MER103 DNA DNA 63 155 -11 1482 81 0 0 chr4 21787956 21788154 -180540193 + L1PA6 LINE L1 5956 6153 -1 21 0 0 0 chr4 21788170 21788191 -180540156 + AT_rich Low_complexity Low_complexity 1 21 0 234 62 0 0 chr4 21789424 21789456 -180538891 + (TA)n Simple_repeat Simple_repeat 1 32 0 260 179 36 24 chr4 21791653 21791737 -180536610 + (TA)n Simple_repeat Simple_repeat 2 86 0 281 188 29 14 chr4 21791849 21791918 -180536429 - L2 LINE L2 -3 3310 3241 231 246 90 57 chr4 21792143 21792265 -180536082 - MLT1I LTR MaLR -199 210 85 254 297 101 34 chr4 21792580 21792728 -180535619 - L2 LINE L2 -44 3269 3112 259 194 16 0 chr4 21793705 21793767 -180534580 + (TA)n Simple_repeat Simple_repeat 1 63 0 250 301 63 26 chr4 21794048 21794317 -180534030 - L1MC/D LINE L1 -2264 5544 5266 254 259 125 35 chr4 21794458 21794701 -180533646 - L1MC/D LINE L1 -1013 5133 4883 24 53 0 0 chr4 21796338 21796376 -180531971 + AT_rich Low_complexity Low_complexity 1 38 0 424 51 0 0 chr4 21796376 21796435 -180531912 - L1PA6 LINE L1 -2 6152 6094 418 294 14 7 chr4 21796848 21796991 -180531356 + MIR SINE MIR 117 260 -2 390 42 0 0 chr4 21797708 21797756 -180530591 + (TG)n Simple_repeat Simple_repeat 1 48 0 2300 86 0 22 chr4 21798728 21799043 -180529304 - AluSg SINE Alu -2 308 1 188 345 0 0 chr4 21799121 21799179 -180529168 - L2 LINE L2 -10 3303 3246 427 350 94 5 chr4 21799301 21799524 -180528823 + MIR SINE MIR 14 256 -6 772 212 208 26 chr4 21799597 21800088 -180528259 - Charlie2 DNA MER1_type -36 2826 2247 476 290 29 14 chr4 21800155 21800362 -180527985 - Charlie2 DNA MER1_type -2515 267 58 229 306 12 12 chr4 21800450 21800535 -180527812 - MER103 DNA DNA -14 152 68 13129 123 26 7 chr4 21800543 21800704 -180527643 + Tigger1 DNA MER2_type 341 497 -1921 180 0 0 0 chr4 21800704 21800724 -180527623 + (CAA)n Simple_repeat Simple_repeat 2 21 0 13129 123 26 7 chr4 21800724 21802600 -180525747 + Tigger1 DNA MER2_type 497 2418 0 872 201 44 20 chr4 21802746 21802950 -180525397 + MER3 DNA MER1_type 1 209 0 418 317 101 22 chr4 21803550 21803777 -180524570 - MIR SINE MIR 0 262 18 23 68 0 0 chr4 21803778 21803822 -180524525 + AT_rich Low_complexity Low_complexity 1 44 0 522 272 22 22 chr4 21804788 21804968 -180523379 - L2 LINE L2 0 3313 3134 197 316 68 30 chr4 21806358 21806491 -180521856 + L2 LINE L2 2239 2376 -938 362 333 68 23 chr4 21806509 21806641 -180521706 + L2 LINE L2 3133 3270 -2 23 0 0 0 chr4 21814105 21814128 -180514219 + AT_rich Low_complexity Low_complexity 1 23 0 375 23 0 0 chr4 21814686 21814730 -180513617 + (TA)n Simple_repeat Simple_repeat 2 45 0 24 0 0 0 chr4 21816356 21816380 -180511967 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 21817502 21817524 -180510823 + AT_rich Low_complexity Low_complexity 1 22 0 2276 92 0 0 chr4 21817905 21818220 -180510127 - AluY SINE Alu 0 315 1 2006 141 3 0 chr4 21818473 21818777 -180509570 + AluSx SINE Alu 3 307 -5 23 54 0 0 chr4 21822444 21822481 -180505866 + AT_rich Low_complexity Low_complexity 1 37 0 2035 131 3 20 chr4 21822983 21823280 -180505067 + AluSg SINE Alu 5 296 -14 32 26 0 0 chr4 21823383 21823422 -180504925 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr4 21823638 21823660 -180504687 + AT_rich Low_complexity Low_complexity 1 22 0 2121 134 0 13 chr4 21823832 21824139 -180504208 + AluSx SINE Alu 1 303 -9 201 159 32 48 chr4 21824273 21824336 -180504011 + (TATAA)n Simple_repeat Simple_repeat 1 62 0 459 292 62 11 chr4 21824544 21824722 -180503625 + MIR SINE MIR 2 188 -74 2120 107 0 3 chr4 21825297 21825588 -180502759 - AluSg SINE Alu -20 290 1 265 258 15 0 chr4 21826776 21826842 -180501505 + L2 LINE L2 3247 3313 0 996 144 0 0 chr4 21827557 21827730 -180500617 + (TA)n Simple_repeat Simple_repeat 2 174 0 1161 61 14 7 chr4 21827730 21827878 -180500469 - AluY SINE Alu -16 295 147 410 89 54 139 chr4 21827978 21828129 -180500218 + L1PA12 LINE L1 6049 6163 0 2325 93 0 3 chr4 21828289 21828589 -180499758 - AluSq SINE Alu -14 299 1 246 105 0 0 chr4 21828823 21828861 -180499486 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 2245 96 3 3 chr4 21828912 21829213 -180499134 + AluSp SINE Alu 1 301 -12 235 320 62 56 chr4 21829770 21829948 -180498399 + MER5A DNA MER1_type 10 188 -1 244 279 13 25 chr4 21829950 21830029 -180498318 - MIR3 SINE MIR -49 159 82 450 35 96 9 chr4 21830425 21830540 -180497807 + (TA)n Simple_repeat Simple_repeat 1 125 0 1602 131 123 0 chr4 21830540 21830792 -180497555 - AluSx SINE Alu -27 285 3 240 35 0 0 chr4 21830867 21830896 -180497451 + (TG)n Simple_repeat Simple_repeat 1 29 0 201 278 0 41 chr4 21831339 21831436 -180496911 + A-rich Low_complexity Low_complexity 2 94 0 1484 175 64 59 chr4 21831500 21831888 -180496459 - MLT1B LTR MaLR 0 390 1 192 315 161 35 chr4 21831924 21832191 -180496156 + L2 LINE L2 2376 2608 -706 2053 125 13 16 chr4 21832191 21832504 -180495843 - AluSq SINE Alu -1 312 1 192 315 161 35 chr4 21832504 21832696 -180495651 + L2 LINE L2 2608 2893 -421 4130 173 7 9 chr4 21832862 21833595 -180494752 - MER44D DNA MER2_type -1 604 2 207 0 0 0 chr4 21833670 21833693 -180494654 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1640 96 5 5 chr4 21833996 21834252 -180494095 + AluSc SINE Alu 67 322 0 229 325 24 0 chr4 21834538 21834621 -180493726 - MIR3 SINE MIR -21 187 103 420 281 16 8 chr4 21834812 21834940 -180493407 + MER94 DNA DNA 2 130 -4 2129 113 0 0 chr4 21835194 21835485 -180492862 + AluSx SINE Alu 22 312 0 265 307 20 30 chr4 21836965 21837066 -180491281 + MIR SINE MIR 158 257 -5 2118 94 35 0 chr4 21837432 21837718 -180490629 - AluSq SINE Alu -17 296 1 199 405 76 8 chr4 21838080 21838211 -180490136 + L2 LINE L2 3133 3272 0 742 215 119 9 chr4 21839456 21839675 -180488672 + L1ME3A LINE L1 5861 6103 -67 2569 49 3 0 chr4 21840301 21840605 -180487742 - AluY SINE Alu -6 305 1 248 321 0 12 chr4 21840874 21840958 -180487389 - MER94 DNA DNA 0 134 52 463 255 108 13 chr4 21841160 21841317 -180487030 - MIR3 SINE MIR -21 187 16 211 200 20 20 chr4 21841457 21841507 -180486840 - L2 LINE L2 0 3313 3264 344 331 65 6 chr4 21843578 21843747 -180484600 - MIR SINE MIR -2 260 82 2405 141 23 9 chr4 21843748 21844188 -180484159 + L1MA9 LINE L1 5864 6309 -3 234 136 34 17 chr4 21844300 21844359 -180483988 + (CATA)n Simple_repeat Simple_repeat 1 60 0 332 247 21 0 chr4 21844366 21844459 -180483888 + L1MC4 LINE L1 6614 6708 -1334 292 253 0 22 chr4 21844503 21844594 -180483753 + L1MC4 LINE L1 6614 6702 -1340 201 74 0 0 chr4 21844596 21844623 -180483724 + (TATG)n Simple_repeat Simple_repeat 2 28 0 253 211 18 83 chr4 21844623 21844732 -180483615 - L1MC4 LINE L1 -1339 6703 6602 288 170 0 0 chr4 21844762 21844815 -180483532 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 653 296 32 9 chr4 21845080 21845300 -180483047 + MIR SINE MIR 38 262 0 23 68 0 0 chr4 21845539 21845583 -180482764 + AT_rich Low_complexity Low_complexity 1 44 0 1664 81 4 28 chr4 21846143 21846391 -180481956 + L1MA2 LINE L1 6063 6304 0 673 191 17 40 chr4 21846409 21846598 -180481749 + L1MA7 LINE L1 5936 6122 -169 2283 115 0 6 chr4 21847351 21847665 -180480682 - AluSx SINE Alu 0 312 1 184 345 71 36 chr4 21847707 21847791 -180480556 + MIR SINE MIR 31 117 -91 858 278 115 47 chr4 21848818 21849304 -180479043 - LTR33 LTR ERVL -1 520 2 314 239 228 0 chr4 21849324 21849416 -180478931 - L2 LINE L2 -3 3310 3198 21 57 0 0 chr4 21849789 21849824 -180478523 + AT_rich Low_complexity Low_complexity 1 35 0 32 0 0 0 chr4 21850440 21850472 -180477875 + AT_rich Low_complexity Low_complexity 1 32 0 1934 86 4 8 chr4 21850712 21850968 -180477379 - AluY SINE Alu -3 308 54 29 78 0 0 chr4 21851191 21851255 -180477092 + AT_rich Low_complexity Low_complexity 1 64 0 212 175 35 0 chr4 21851255 21851312 -180477035 + GA-rich Low_complexity Low_complexity 2 60 0 568 325 55 20 chr4 21851509 21851709 -180476638 + MIR SINE MIR 32 238 -24 285 286 19 29 chr4 21851712 21851817 -180476530 + L2 LINE L2 2315 2418 -896 295 330 21 0 chr4 21853422 21853519 -180474828 + MIR3 SINE MIR 61 159 -49 288 53 0 0 chr4 21854319 21854357 -180473990 + (GGGGA)n Simple_repeat Simple_repeat 5 42 0 218 299 26 0 chr4 21854757 21854834 -180473513 + GA-rich Low_complexity Low_complexity 2 80 0 769 216 88 0 chr4 21857202 21857373 -180470974 - MER5A DNA MER1_type -2 187 2 659 235 5 70 chr4 21857396 21857583 -180470764 - MER63A DNA MER1_type -35 175 1 2098 111 99 41 chr4 21857709 21858053 -180470294 - THE1B LTR MaLR 0 364 1 483 236 96 51 chr4 21858627 21858805 -180469542 + MIR SINE MIR 74 259 -3 2257 93 7 0 chr4 21859036 21859326 -180469021 - AluY SINE Alu -19 292 1 2236 105 0 0 chr4 21859518 21859813 -180468534 - AluSg SINE Alu -15 295 1 227 0 91 0 chr4 21860376 21860409 -180467938 + T-rich Low_complexity Low_complexity 5 40 0 2016 109 7 11 chr4 21860444 21860728 -180467619 - AluSq SINE Alu -30 283 1 1671 178 50 4 chr4 21860892 21861173 -180467174 + AluJb SINE Alu 1 294 -18 399 231 370 0 chr4 21861638 21861811 -180466536 + MIR SINE MIR 3 239 -23 468 300 126 9 chr4 21862811 21863034 -180465313 - MIR SINE MIR -2 260 12 188 326 76 22 chr4 21864979 21865071 -180463276 + MIR3 SINE MIR 2 98 -110 207 114 0 0 chr4 21865371 21865406 -180462941 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 222 208 0 0 chr4 21865730 21865778 -180462569 + (AATTG)n Simple_repeat Simple_repeat 5 52 0 192 279 0 0 chr4 21866045 21866088 -180462259 - L2 LINE L2 -8 3305 3263 377 318 98 19 chr4 21866373 21866587 -180461760 - MIR SINE MIR -3 259 29 884 213 0 0 chr4 21866776 21866945 -180461402 + AluJb SINE Alu 137 305 -7 2418 76 0 3 chr4 21867317 21867618 -180460729 + AluY SINE Alu 1 300 -11 3533 105 4 8 chr4 21867624 21868139 -180460208 + L1PA13 LINE L1 5432 5944 -219 186 43 0 0 chr4 21869153 21869176 -180459171 + (CA)n Simple_repeat Simple_repeat 1 23 0 285 277 43 0 chr4 21869392 21869486 -180458861 - MIR SINE MIR -4 258 161 503 310 35 100 chr4 21870601 21871052 -180457295 - L2 LINE L2 -17 3296 2875 254 75 528 0 chr4 21872675 21872728 -180455619 - MIR SINE MIR -92 116 36 226 209 0 0 chr4 21873852 21873895 -180454452 + (CA)n Simple_repeat Simple_repeat 2 44 0 1045 276 59 28 chr4 21874287 21874642 -180453705 + LTR16A LTR ERVL 38 403 -47 1764 132 38 25 chr4 21874844 21875185 -180453162 - MER4A LTR ERV1 0 664 261 632 131 0 10 chr4 21875185 21875284 -180453063 - MER4A LTR ERV1 -566 98 1 7283 107 46 12 chr4 21875296 21876419 -180451928 - MER4A-int LTR ERV1 -5 6593 5432 582 160 134 0 chr4 21876419 21876538 -180451809 + LTR8 LTR ERV1 123 257 -434 4598 67 59 9 chr4 21876538 21877235 -180451112 - MER4-int LTR ERV1 -4103 2495 1764 489 34 0 0 chr4 21877251 21877310 -180451037 + (CA)n Simple_repeat Simple_repeat 2 60 0 3281 124 120 25 chr4 21877315 21877881 -180450466 - MER4-int LTR ERV1 -5608 1150 531 2988 91 95 0 chr4 21877882 21878291 -180450056 - LTR7 LTR ERV1 -2 448 1 2467 90 50 13 chr4 21878291 21878669 -180449678 - HERVH LTR ERV1 0 7713 7322 1386 127 38 0 chr4 21878667 21878879 -180449468 - HERVH LTR ERV1 -1894 5819 5600 * 8268 130 6 7 chr4 21878880 21880603 -180447744 - HERVH LTR ERV1 -2287 4242 3492 824 162 20 0 chr4 21880593 21880741 -180447606 - HERVH LTR ERV1 -4423 3290 3140 * 20147 102 21 7 chr4 21880735 21883681 -180444666 - HERVH LTR ERV1 -4726 2987 1 3081 81 93 0 chr4 21883683 21884093 -180444254 - LTR7 LTR ERV1 -2 448 1 2357 127 12 6 chr4 21884093 21884439 -180443908 - MER4A-int LTR ERV1 -6222 536 189 951 258 119 51 chr4 21884438 21884680 -180443667 - MER4A-int LTR ERV1 -4107 2224 1949 * 2233 90 10 0 chr4 21884680 21884969 -180443378 + AluY SINE Alu 1 292 -19 951 258 119 51 chr4 21884969 21885079 -180443268 - MER4A-int LTR ERV1 -4382 1949 1848 2548 118 86 31 chr4 21885108 21885731 -180442616 - MER4A-int LTR ERV1 -5745 853 3 1666 129 16 22 chr4 21885736 21886046 -180442301 - MER4A LTR ERV1 0 664 261 672 121 0 10 chr4 21886046 21886145 -180442202 - MER4A LTR ERV1 -566 98 1 868 235 20 15 chr4 21886475 21886658 -180441689 - MLT1A2 LTR MaLR 0 374 191 713 176 69 8 chr4 21886658 21886789 -180441558 + MLT1A1 LTR MaLR 1 139 -226 787 148 0 16 chr4 21886789 21886917 -180441430 - FLAM_C SINE Alu 0 143 18 732 234 60 5 chr4 21886920 21887104 -180441243 + MLT1A1 LTR MaLR 171 364 -1 313 227 0 13 chr4 21887171 21887246 -180441101 - MLT1A2 LTR MaLR -213 161 88 1411 120 0 0 chr4 21887251 21887460 -180440887 + L1P3 LINE L1 949 1157 -5304 805 186 18 36 chr4 21887460 21887627 -180440720 - MER58 DNA MER1_type -176 165 2 23 0 0 0 chr4 21887817 21887840 -180440507 + AT_rich Low_complexity Low_complexity 1 23 0 198 341 80 0 chr4 21887880 21887968 -180440379 + L2 LINE L2 3178 3272 0 6218 134 12 7 chr4 21888672 21890174 -180438173 - L1PB2 LINE L1 -2 6149 4639 341 339 8 0 chr4 21890195 21890325 -180438022 + L1MEd LINE L1 42 172 -5947 * 592 206 206 0 chr4 21890323 21890459 -180437888 + L1MEd LINE L1 466 629 -5490 632 234 74 69 chr4 21890551 21890785 -180437562 + L1MEd LINE L1 796 1034 -5085 679 231 0 30 chr4 21890785 21890919 -180437428 + FLAM_C SINE Alu 1 130 -3 632 234 74 69 chr4 21890919 21891103 -180437244 + L1MEd LINE L1 1034 1216 -4903 307 97 32 16 chr4 21891111 21891173 -180437174 + L1PB1 LINE L1 5957 6019 -132 215 335 60 37 chr4 21891215 21891430 -180436917 + MIR SINE MIR 4 223 -39 341 236 0 0 chr4 21891591 21891663 -180436684 - L2 LINE L2 0 3272 3201 189 316 0 0 chr4 21891691 21891748 -180436599 + MIR SINE MIR 169 225 -37 202 284 60 15 chr4 21891891 21891958 -180436389 + MIR SINE MIR 15 84 -178 693 294 60 7 chr4 21891965 21892247 -180436100 - LTR16C LTR ERVL -4 487 191 207 180 98 16 chr4 21892389 21892450 -180435897 + MIR SINE MIR 99 164 -98 590 238 65 92 chr4 21892537 21892940 -180435407 + MLT1J2 LTR MaLR 59 450 0 278 222 0 49 chr4 21892960 21893041 -180435306 + MIR SINE MIR 186 262 0 1016 254 152 6 chr4 21894248 21894610 -180433737 + MER31B LTR ERV1 1 415 -51 2835 141 19 23 chr4 21894626 21895102 -180433245 + MER31A LTR ERV1 12 485 0 287 266 60 47 chr4 21895170 21895265 -180433082 + MIR SINE MIR 24 121 -87 1243 124 5 5 chr4 21895265 21895451 -180432896 - MER83C-int LTR ERV1 -982 3898 3713 304 106 0 0 chr4 21895461 21895508 -180432839 + MER83B-int LTR ERV1 3666 3712 -1168 7164 192 46 21 chr4 21895509 21897059 -180431288 - MER83C-int LTR ERV1 -1176 3704 48 2027 139 78 6 chr4 21897118 21897450 -180430897 - MER83C LTR ERV1 0 373 18 1791 211 15 0 chr4 21897464 21897791 -180430556 + MSTA LTR MaLR 97 428 0 2726 123 5 3 chr4 21898339 21898713 -180429634 - THE1C LTR MaLR 0 375 1 2696 123 5 5 chr4 21899637 21900012 -180428335 - THE1C LTR MaLR 0 375 1 270 256 0 12 chr4 21900244 21900326 -180428021 - LTR37B LTR ERV1 0 468 388 7952 170 54 2 chr4 21900337 21901766 -180426581 + L1PB2 LINE L1 514 2016 -4847 3212 139 7 138 chr4 21901767 21902534 -180425813 - MSTA-int LTR MaLR -912 668 3 2032 169 130 16 chr4 21902535 21902919 -180425428 - MSTA LTR MaLR 0 428 1 14294 177 23 17 chr4 21902921 21904862 -180423485 + L1PB2 LINE L1 2783 4712 -2155 2083 154 55 25 chr4 21904862 21905226 -180423121 + THE1C LTR MaLR 1 375 0 14294 177 23 17 chr4 21905226 21905508 -180422839 + L1PB2 LINE L1 4712 4991 -1876 298 91 68 0 chr4 21905508 21905552 -180422795 + U3 snRNA snRNA 29 75 -142 14294 177 23 17 chr4 21905552 21905634 -180422713 + L1PB2 LINE L1 4991 5071 -1796 200 59 29 0 chr4 21905634 21905668 -180422679 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 14294 177 23 17 chr4 21905668 21907383 -180420964 + L1PB2 LINE L1 5071 6867 0 511 216 39 0 chr4 21907442 21907544 -180420803 - MER3 DNA MER1_type -103 106 1 22 0 0 0 chr4 21908776 21908798 -180419549 + AT_rich Low_complexity Low_complexity 1 22 0 3682 135 14 52 chr4 21908888 21909439 -180418908 + MER41B LTR ERV1 1 524 -111 10416 24 3 2 chr4 21909439 21911425 -180416922 - L1PA3 LINE L1 0 6155 4222 3682 135 14 52 chr4 21911425 21911533 -180416814 + MER41B LTR ERV1 524 635 0 586 208 32 0 chr4 21911679 21911804 -180416543 - MLT1J2 LTR MaLR -318 132 4 348 256 72 8 chr4 21912072 21912197 -180416150 + MIR SINE MIR 124 256 -6 2596 160 22 2 chr4 21912954 21913411 -180414936 + L1MB3 LINE L1 5718 6183 0 524 308 111 21 chr4 21914107 21914341 -180414006 + MIR SINE MIR 8 262 0 247 332 134 11 chr4 21915300 21915487 -180412860 + MIR SINE MIR 53 262 0 260 335 36 24 chr4 21915777 21915944 -180412403 + MIR SINE MIR 82 250 -12 1808 187 12 0 chr4 21917395 21917721 -180410626 + MLT1B LTR MaLR 1 330 -60 329 152 0 152 chr4 21917839 21917931 -180410416 - MLT1E2 LTR MaLR 0 626 549 1894 81 0 4 chr4 21918036 21918282 -180410065 - L1P LINE L1 -5901 245 1 1612 86 17 10 chr4 21918249 21918586 -180409761 - L1P2 LINE L1 -628 5526 5187 * 2196 147 2 66 chr4 21918586 21919130 -180409217 + L1P LINE L1 3158 3666 -2480 17842 26 1 1 chr4 21919230 21921970 -180406377 - L1PA3 LINE L1 -109 6046 3305 482 282 40 0 chr4 21922111 21922260 -180406087 - MER63 DNA MER1_type -1 1061 907 477 80 13 27 chr4 21922260 21922335 -180406012 + MLT1B LTR MaLR 317 390 0 245 250 0 0 chr4 21923221 21923269 -180405078 + polypyrimidine Low_complexity Low_complexity 1 48 0 3126 65 15 5 chr4 21923767 21924167 -180404180 + MLT2A1 LTR ERVL 1 404 -40 337 146 0 0 chr4 21924221 21924276 -180404071 + MLT2A1 LTR ERVL 390 444 0 1840 128 88 0 chr4 21924819 21925092 -180403255 - AluSx SINE Alu -15 297 1 1921 185 38 9 chr4 21925141 21925482 -180402865 - MLT1A1 LTR MaLR 0 365 15 1301 224 101 34 chr4 21925518 21925956 -180402391 + MLT1C LTR MaLR 1 467 0 750 307 38 4 chr4 21925970 21926208 -180402139 + MIR SINE MIR 16 261 -1 24 0 0 0 chr4 21926284 21926308 -180402039 + AT_rich Low_complexity Low_complexity 1 24 0 938 176 33 22 chr4 21926326 21926508 -180401839 - MLT1A2 LTR MaLR -2 372 189 366 169 40 8 chr4 21926530 21926654 -180401693 + GA-rich Low_complexity Low_complexity 1 128 0 872 154 26 13 chr4 21926671 21926827 -180401520 - MLT1A2 LTR MaLR -216 158 1 1946 194 50 52 chr4 21928036 21928535 -180399812 + MLT1D LTR MaLR 1 498 -7 1161 249 30 14 chr4 21928594 21928891 -180399456 - MLT1A1 LTR MaLR -8 357 56 2381 110 0 0 chr4 21929409 21929718 -180398629 + AluSx SINE Alu 1 309 -3 833 191 45 6 chr4 21930993 21931171 -180397176 + MER53 DNA DNA 2 186 -3 649 235 143 31 chr4 21932198 21932394 -180395953 - MER20 DNA MER1_type 0 219 2 2319 89 3 0 chr4 21932557 21932850 -180395497 + AluSc SINE Alu 1 294 -15 377 326 67 27 chr4 21932892 21933116 -180395231 - L2 LINE L2 0 3313 3081 624 295 126 16 chr4 21933117 21933483 -180394864 - LTR50 LTR ERVL -1 794 389 538 223 81 0 chr4 21933611 21933759 -180394588 - LTR50 LTR ERVL -628 167 8 336 48 0 0 chr4 21934019 21934061 -180394286 + (TG)n Simple_repeat Simple_repeat 2 43 0 194 370 0 0 chr4 21934084 21934138 -180394209 - L2 LINE L2 -9 3263 3210 1623 178 110 14 chr4 21936422 21936445 -180391902 - MLT2D LTR ERVL -14 400 381 357 62 0 0 chr4 21936445 21936493 -180391854 + (TG)n Simple_repeat Simple_repeat 1 48 0 1623 178 110 14 chr4 21936493 21936834 -180391513 - MLT2D LTR ERVL -33 381 1 6728 210 13 5 chr4 21936934 21938169 -180390178 - ERVL LTR ERVL -2517 3247 2003 493 241 41 87 chr4 21938409 21938689 -180389658 + MLT1H1 LTR MaLR 202 547 -8 195 392 15 23 chr4 21938748 21938878 -180389469 + MIR3 SINE MIR 59 187 -21 311 327 96 28 chr4 21939458 21939562 -180388785 - L1MC4a LINE L1 -1821 5987 5891 2436 73 0 10 chr4 21939562 21939904 -180388443 - AluY SINE Alu 0 311 1 311 327 96 28 chr4 21939904 21940050 -180388297 - L1MC4a LINE L1 -1917 5891 5720 1018 230 53 32 chr4 21940066 21940230 -180388117 - MLT1A2 LTR MaLR -24 350 176 306 50 0 0 chr4 21940230 21940270 -180388077 + (GA)n Simple_repeat Simple_repeat 2 41 0 1018 230 53 32 chr4 21940270 21940388 -180387959 - MLT1A2 LTR MaLR -198 176 62 577 111 63 71 chr4 21940388 21940514 -180387833 + L1MB2 LINE L1 6047 6171 0 264 231 120 60 chr4 21940642 21940759 -180387588 - MLT1J LTR MaLR -75 436 313 276 214 86 14 chr4 21941005 21941075 -180387272 - MLT1L LTR MaLR -536 79 5 2016 121 0 24 chr4 21941840 21942137 -180386210 - AluSc SINE Alu -19 290 1 372 267 185 0 chr4 21942148 21942294 -180386053 - L1ME3A LINE L1 -5 6165 5993 1240 254 143 35 chr4 21942419 21942875 -180385472 + MLT1D LTR MaLR 1 505 0 1776 147 0 0 chr4 21943708 21943981 -180384366 + AluY SINE Alu 14 286 -25 2415 184 26 22 chr4 21944192 21944655 -180383692 - MLT1C LTR MaLR 0 467 3 400 279 0 0 chr4 21944895 21944981 -180383366 - MER5A DNA MER1_type -83 106 21 23 0 0 0 chr4 21945199 21945222 -180383125 + AT_rich Low_complexity Low_complexity 1 23 0 1100 174 10 0 chr4 21945483 21945679 -180382668 + L1MA9 LINE L1 5985 6182 -130 2042 164 14 5 chr4 21945794 21946165 -180382182 - L1P LINE L1 -3156 2990 2617 4191 143 21 69 chr4 21946961 21947858 -180380489 + L1P LINE L1 4121 4974 -1172 793 268 28 38 chr4 21949119 21949410 -180378937 - AluJo SINE Alu -11 301 14 465 309 65 25 chr4 21950376 21950577 -180377770 + MIR SINE MIR 35 243 -19 496 268 147 32 chr4 21951975 21952132 -180376215 + MER5A DNA MER1_type 15 189 0 353 238 0 0 chr4 21953065 21953149 -180375198 - MLT1A2 LTR MaLR -306 84 1 2132 183 32 9 chr4 21954628 21955086 -180373261 - L1MB3 LINE L1 -65 6124 5662 2061 146 17 0 chr4 21956003 21956360 -180371987 + L1PBa LINE L1 1654 2016 -4847 1315 184 9 0 chr4 21956361 21956589 -180371758 - MSTA-int LTR MaLR -912 668 439 292 192 68 41 chr4 21956590 21956663 -180371684 - MSTA LTR MaLR -178 250 176 310 217 103 60 chr4 21956708 21956892 -180371455 - MSTA-int LTR MaLR -1218 433 242 1754 217 15 0 chr4 21957721 21958048 -180370299 - MSTA LTR MaLR 0 428 97 462 267 181 8 chr4 21958054 21958320 -180370027 + MER83B LTR ERV1 5 316 -62 8243 129 7 15 chr4 21959021 21960320 -180368027 - THE1A-int LTR MaLR -291 1289 1 672 212 108 4 chr4 21960323 21960592 -180367755 - THE1A LTR MaLR -3 352 56 260 335 36 24 chr4 21961904 21962071 -180366276 - MIR SINE MIR -12 250 82 22 0 0 0 chr4 21962359 21962381 -180365966 + AT_rich Low_complexity Low_complexity 1 22 0 711 231 11 60 chr4 21963192 21963448 -180364899 - MER8 DNA MER2_type 0 239 3 1371 200 37 14 chr4 21964524 21964819 -180363528 + L1M4 LINE L1 4637 4938 -1208 203 294 29 15 chr4 21966453 21966521 -180361826 - MIR SINE MIR -129 133 65 1772 140 35 7 chr4 21966747 21967032 -180361315 + AluSq SINE Alu 1 293 -20 1090 214 75 14 chr4 21968523 21968804 -180359543 - MLT1E3 LTR MaLR 0 624 327 524 250 61 14 chr4 21968868 21969014 -180359333 - MLT1E3 LTR MaLR -393 261 62 5598 126 35 14 chr4 21969760 21970721 -180357626 - L1P LINE L1 -4109 2037 1056 2291 90 3 0 chr4 21971710 21972000 -180356347 + AluSc SINE Alu 1 291 -18 377 326 67 27 chr4 21972045 21972269 -180356078 - L2 LINE L2 0 3313 3081 590 276 139 30 chr4 21972270 21972636 -180355711 - LTR50 LTR ERVL -1 794 389 245 250 0 0 chr4 21973797 21973845 -180354502 + polypyrimidine Low_complexity Low_complexity 1 48 0 2553 92 31 15 chr4 21974343 21974735 -180353612 + MLT2A1 LTR ERVL 1 398 -46 524 308 111 21 chr4 21976208 21976442 -180351905 + MIR SINE MIR 8 262 0 2122 204 3 3 chr4 21977733 21978096 -180350251 - MLT1A1 LTR MaLR -2 363 1 786 284 28 14 chr4 21978147 21978358 -180349989 - LTR33 LTR ERVL -307 214 1 391 311 15 0 chr4 21978555 21978687 -180349660 + L2 LINE L2 2219 2352 -962 215 247 161 0 chr4 21978955 21979036 -180349311 - MIR SINE MIR -5 257 164 2139 103 0 0 chr4 21980007 21980280 -180348067 - AluSc SINE Alu -36 273 1 370 93 0 0 chr4 21980281 21980335 -180348012 + L1MA9 LINE L1 6254 6307 -5 1726 184 0 9 chr4 21981281 21981607 -180346740 + MER33 DNA MER1_type 1 323 -1 2122 204 3 3 chr4 21982168 21982531 -180345816 - MLT1A1 LTR MaLR -2 363 1 786 284 28 14 chr4 21982582 21982793 -180345554 - LTR33 LTR ERVL -307 214 1 391 311 15 0 chr4 21982990 21983122 -180345225 + L2 LINE L2 2219 2352 -962 273 310 271 10 chr4 21983390 21983593 -180344754 - MIR SINE MIR -5 257 2 190 321 0 0 chr4 21983811 21983864 -180344483 - L2 LINE L2 -43 3229 3177 278 342 114 0 chr4 21983974 21984088 -180344259 - L2 LINE L2 -1 3312 3186 22 35 0 0 chr4 21984381 21984410 -180343937 + AT_rich Low_complexity Low_complexity 1 29 0 282 176 81 0 chr4 21985905 21985979 -180342368 + Charlie7 DNA MER1_type 278 357 -2255 276 143 0 0 chr4 21986243 21986285 -180342062 + MER2 DNA MER2_type 3 44 -301 317 211 0 18 chr4 21986353 21986410 -180341937 + MER2 DNA MER2_type 290 345 0 1396 252 117 18 chr4 21986410 21987017 -180341330 + Charlie7 DNA MER1_type 1729 2395 -217 328 278 42 21 chr4 21987031 21987175 -180341172 - MIR SINE MIR 0 262 116 369 301 26 13 chr4 21987627 21987783 -180340564 + L3 LINE CR1 1165 1322 -255 381 22 0 0 chr4 21988018 21988064 -180340283 + (TG)n Simple_repeat Simple_repeat 2 47 0 386 335 59 12 chr4 21988214 21988384 -180339963 - MIR SINE MIR -71 191 14 222 350 41 0 chr4 21988391 21988488 -180339859 - L2 LINE L2 -815 2499 2399 304 256 98 37 chr4 21990369 21990533 -180337814 + L1ME3A LINE L1 5960 6133 -37 2351 75 7 0 chr4 21991121 21991413 -180336934 - AluY SINE Alu -17 294 1 517 281 7 7 chr4 21993252 21993405 -180334942 + L1MA10 LINE L1 6169 6321 -13 2123 68 4 46 chr4 21993406 21993687 -180334660 + AluSp SINE Alu 23 291 -22 211 305 113 35 chr4 21993711 21993852 -180334495 + MIR SINE MIR 57 208 -54 981 135 0 0 chr4 21995445 21995578 -180332769 + FLAM_C SINE Alu 1 133 0 249 303 8 34 chr4 21996644 21996763 -180331584 + CT-rich Low_complexity Low_complexity 5 120 0 197 208 0 19 chr4 21996771 21996824 -180331523 + T-rich Low_complexity Low_complexity 3 54 0 984 190 58 23 chr4 21996855 21997151 -180331196 - MER2 DNA MER2_type 0 345 6 202 226 16 32 chr4 21997870 21997932 -180330415 + T-rich Low_complexity Low_complexity 1 61 0 8870 35 0 2 chr4 21998178 21999237 -180329110 - L1P LINE L1 -3137 3009 1953 6567 38 1 0 chr4 21999237 21999973 -180328374 + L1PA3 LINE L1 5416 6152 -3 1768 161 14 3 chr4 22000127 22000413 -180327934 + AluSx SINE Alu 3 291 -21 1088 216 9 19 chr4 22000663 22000876 -180327471 - MER77 LTR ERV1 -7 598 388 42656 58 6 1 chr4 22000888 22007013 -180321334 - L1PA5 LINE L1 0 6154 1 1508 211 49 21 chr4 22007022 22007349 -180320998 - MER77 LTR ERV1 -210 395 60 268 309 49 12 chr4 22007855 22007943 -180320404 - L2 LINE L2 -24 3248 3158 189 139 0 0 chr4 22007946 22007989 -180320358 + (TTTTTG)n Simple_repeat Simple_repeat 1 43 0 481 252 46 23 chr4 22008702 22008833 -180319514 - MER5A DNA MER1_type -30 159 26 270 116 0 0 chr4 22009913 22009956 -180318391 + (CA)n Simple_repeat Simple_repeat 2 44 0 479 310 71 25 chr4 22011431 22011656 -180316691 - MIR SINE MIR -19 243 8 1558 193 11 11 chr4 22012372 22012647 -180315700 - AluJo SINE Alu -37 275 1 28 61 0 0 chr4 22014023 22014072 -180314275 + AT_rich Low_complexity Low_complexity 1 49 0 1439 188 50 24 chr4 22015636 22015934 -180312413 - AluJo SINE Alu -6 306 1 387 278 122 65 chr4 22016826 22017071 -180311276 + MIR SINE MIR 2 260 -2 769 224 88 24 chr4 22019766 22019971 -180308376 + MIR SINE MIR 11 228 -34 2314 98 0 22 chr4 22020080 22020396 -180307951 - AluSg SINE Alu -1 309 1 311 281 22 7 chr4 22020911 22021050 -180307297 - L1 LINE L1 -1723 4423 4283 1231 200 37 14 chr4 22021368 22021663 -180306684 + L1M4 LINE L1 4637 4938 -1208 334 311 59 15 chr4 22022271 22022406 -180305941 - MER91B DNA MER1_type -32 158 18 1517 212 14 10 chr4 22022411 22022708 -180305639 + AluJo SINE Alu 1 298 -14 680 247 45 0 chr4 22022915 22023093 -180305254 - MER5A DNA MER1_type -3 186 1 36730 72 16 17 chr4 22023188 22029340 -180299007 + L1PA5 LINE L1 11 6152 -2 4567 72 15 0 chr4 22030494 22031094 -180297253 + L1PA7 LINE L1 5546 6154 0 427 339 39 17 chr4 22031119 22031352 -180296995 - MIR SINE MIR -2 260 23 413 97 14 0 chr4 22033122 22033194 -180295153 + (TA)n Simple_repeat Simple_repeat 2 74 0 213 39 0 0 chr4 22033431 22033457 -180294890 + (TG)n Simple_repeat Simple_repeat 2 27 0 * 230 54 0 27 chr4 22033456 22033493 -180294854 + (TA)n Simple_repeat Simple_repeat 1 36 0 1256 98 12 0 chr4 22033571 22033734 -180294613 + AluSg/x SINE Alu 135 299 -13 329 269 76 8 chr4 22033835 22033954 -180294393 + L2 LINE L2 3136 3262 -10 345 277 27 68 chr4 22034720 22034868 -180293479 - MIR3 SINE MIR -57 151 10 811 266 18 65 chr4 22036444 22036617 -180291730 + MIR SINE MIR 1 158 -104 2313 106 0 0 chr4 22036617 22036920 -180291427 - AluSq SINE Alu -10 303 1 811 266 18 65 chr4 22036920 22037021 -180291326 + MIR SINE MIR 158 262 0 192 152 0 0 chr4 22037429 22037462 -180290885 + L2 LINE L2 3279 3311 -2 229 372 68 14 chr4 22037680 22037828 -180290519 - MIR3 SINE MIR -11 197 42 340 361 45 8 chr4 22037836 22037969 -180290378 - MIR3 SINE MIR -3 205 68 21 0 0 0 chr4 22038350 22038371 -180289976 + AT_rich Low_complexity Low_complexity 1 21 0 189 268 0 0 chr4 22038400 22038441 -180289906 + L2 LINE L2 3222 3262 -10 309 51 0 0 chr4 22038461 22038500 -180289847 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 1571 251 57 24 chr4 22040017 22040715 -180287632 - L2 LINE L2 0 3313 2588 693 332 138 55 chr4 22040963 22042099 -180286248 + L2 LINE L2 1609 2839 -475 190 211 28 127 chr4 22042280 22042351 -180285996 + MIR SINE MIR 88 151 -111 420 304 20 38 chr4 22042880 22043086 -180285261 + MIR3 SINE MIR 15 212 -50 782 217 4 83 chr4 22044436 22044689 -180283658 + MER8 DNA MER2_type 7 239 0 213 243 29 29 chr4 22045378 22045428 -180282919 + (CAAA)n Simple_repeat Simple_repeat 2 54 -17 1075 197 75 105 chr4 22045428 22045906 -180282441 + MLT2C2 LTR ERVL 1 464 0 213 243 29 29 chr4 22045906 22045925 -180282422 + (CAAA)n Simple_repeat Simple_repeat 53 71 0 287 309 65 14 chr4 22046466 22046587 -180281760 - L2 LINE L2 -10 3303 3173 2158 163 14 3 chr4 22046587 22046948 -180281399 - MLT1A1 LTR MaLR 0 365 1 287 309 65 14 chr4 22046948 22046965 -180281382 - L2 LINE L2 -140 3173 3158 959 182 68 27 chr4 22047259 22047348 -180280999 - MER46A DNA MER2_type -2502 229 145 2066 122 29 32 chr4 22047348 22047724 -180280623 - THE1C LTR MaLR 0 375 1 959 182 68 27 chr4 22047724 22047854 -180280493 - MER46A DNA MER2_type -2586 145 1 327 327 82 0 chr4 22047939 22048098 -180280249 - MLT1J1 LTR MaLR -148 298 127 714 139 35 0 chr4 22048291 22048406 -180279941 - FLAM_C SINE Alu -11 132 14 252 342 89 14 chr4 22048914 22049195 -180279152 - L1ME LINE L1 -297 5824 5523 243 0 0 0 chr4 22049243 22049270 -180279077 + (CA)n Simple_repeat Simple_repeat 2 28 0 267 231 112 0 chr4 22049507 22049612 -180278735 - MIR SINE MIR -68 140 66 270 177 0 198 chr4 22049624 22049720 -180278627 - L2 LINE L2 -2 3311 3235 278 316 162 0 chr4 22050644 22050761 -180277586 - MIR SINE MIR -19 243 108 1999 137 11 0 chr4 22050848 22051152 -180277195 + AluSx SINE Alu 1 307 0 295 384 38 0 chr4 22051154 22051287 -180277060 - MIR3 SINE MIR -31 177 40 569 318 47 35 chr4 22051369 22051624 -180276723 + MIR SINE MIR 3 260 -2 186 357 62 16 chr4 22053086 22053215 -180275132 + MIR SINE MIR 36 170 -92 1162 200 230 36 chr4 22054117 22054614 -180273733 - MLT1E2 LTR MaLR 0 626 62 33 0 0 0 chr4 22055181 22055214 -180273133 + AT_rich Low_complexity Low_complexity 1 33 0 2060 111 0 4 chr4 22055216 22055521 -180272826 + AluSx SINE Alu 4 307 0 1147 142 15 20 chr4 22055533 22055737 -180272610 - MER2 DNA MER2_type -142 203 1 364 194 43 11 chr4 22055904 22055997 -180272350 + MLT1L LTR MaLR 513 608 -7 2253 95 0 3 chr4 22056236 22056531 -180271816 - AluY SINE Alu -17 294 1 262 286 168 30 chr4 22056532 22056735 -180271612 - MIR SINE MIR 0 262 32 199 363 65 8 chr4 22056856 22056980 -180271367 - L2 LINE L2 -18 3295 3165 2029 115 44 3 chr4 22057200 22057495 -180270852 - AluSq SINE Alu -6 307 1 208 294 29 15 chr4 22057719 22057787 -180270560 + MIR SINE MIR 65 133 -129 311 317 33 17 chr4 22058607 22058727 -180269620 + MIR SINE MIR 131 252 -10 200 229 21 21 chr4 22058948 22058996 -180269351 + MIR SINE MIR 65 112 -150 333 268 258 41 chr4 22059016 22059385 -180268962 - L2 LINE L2 0 3313 2865 202 380 56 0 chr4 22059448 22059556 -180268791 + MIR SINE MIR 130 243 -19 348 321 19 0 chr4 22059611 22059717 -180268630 - L2 LINE L2 -2 3311 3204 1684 166 13 36 chr4 22059980 22060288 -180268059 + AluJo SINE Alu 1 301 -11 1575 209 3 31 chr4 22061524 22061617 -180266730 + MLT1A1 LTR MaLR 1 95 -270 2337 136 22 5 chr4 22061617 22061986 -180266361 - THE1C LTR MaLR 0 375 1 1575 209 3 31 chr4 22061986 22062246 -180266101 + MLT1A1 LTR MaLR 95 344 -21 205 369 104 18 chr4 22062301 22062637 -180265710 - L2 LINE L2 -955 2359 1995 621 297 30 42 chr4 22062707 22062943 -180265404 + MIR SINE MIR 17 249 -13 976 186 48 5 chr4 22063023 22063233 -180265114 + L1MD2 LINE L1 6139 6357 -2 271 312 92 50 chr4 22063234 22063452 -180264895 - L2 LINE L2 -1389 1925 1699 200 310 0 0 chr4 22063526 22063584 -180264763 + GA-rich Low_complexity Low_complexity 4 61 0 1340 227 52 45 chr4 22064172 22064595 -180263752 + MLT1D LTR MaLR 80 505 0 236 316 58 58 chr4 22064768 22064974 -180263373 - L2 LINE L2 -2419 895 690 268 296 30 53 chr4 22065144 22065276 -180263071 + MLT1K LTR MaLR 108 236 -352 444 242 83 13 chr4 22065319 22065476 -180262871 + MLT1K LTR MaLR 420 587 -1 2340 108 20 8 chr4 22065977 22066328 -180262019 - THE1A LTR MaLR 0 355 1 11602 95 8 4 chr4 22066328 22067902 -180260445 - THE1A-int LTR MaLR 0 1580 1 2238 116 14 11 chr4 22067902 22068256 -180260091 - THE1A LTR MaLR 0 355 1 267 280 40 0 chr4 22068480 22068555 -180259792 - L2 LINE L2 -25 3247 3170 242 277 15 0 chr4 22069128 22069193 -180259154 + CT-rich Low_complexity Low_complexity 3 68 0 204 40 0 0 chr4 22069882 22069907 -180258440 + (T)n Simple_repeat Simple_repeat 1 25 0 320 119 0 15 chr4 22070309 22070376 -180257971 + L1 LINE L1 4971 5036 -1110 3763 141 8 2 chr4 22070407 22071018 -180257329 + L1PA16 LINE L1 5538 6152 -14 384 341 48 24 chr4 22072601 22072768 -180255579 + L2 LINE L2 3102 3272 0 247 184 20 0 chr4 22074053 22074102 -180254245 + MLT1H LTR MaLR 12 61 -488 294 250 58 0 chr4 22074360 22074464 -180253883 + MLT1H LTR MaLR 434 543 -6 3741 147 75 5 chr4 22074517 22075268 -180253079 - Tigger3(Golem) DNA MER2_type 0 3029 2227 1522 283 49 5 chr4 22075621 22076235 -180252112 + L1ME2 LINE L1 1462 2102 -4294 1398 224 87 16 chr4 22076254 22076633 -180251714 + MLT2D LTR ERVL 8 413 -1 2234 101 30 0 chr4 22076655 22076951 -180251396 + AluSx SINE Alu 1 305 -7 684 228 82 22 chr4 22076953 22077235 -180251112 + L1ME2 LINE L1 2141 2488 -3908 323 318 20 0 chr4 22077269 22077470 -180250877 + L1ME2 LINE L1 2501 2705 -3510 1228 262 57 49 chr4 22077480 22078109 -180250238 + L1ME2 LINE L1 5561 6194 -39 3469 120 11 17 chr4 22078117 22078418 -180249929 - MER1A DNA MER1_type -2173 529 231 2340 118 28 25 chr4 22078418 22078781 -180249566 + THE1B LTR MaLR 1 364 0 3469 120 11 17 chr4 22078781 22079011 -180249336 - MER1A DNA MER1_type -2471 231 1 272 301 32 0 chr4 22080578 22080671 -180247676 + MIR SINE MIR 131 226 -36 411 141 0 24 chr4 22080858 22080943 -180247404 - AluJ/FRAM SINE Alu 0 312 230 1305 222 163 120 chr4 22081962 22082589 -180245758 + MLT1E2 LTR MaLR 1 626 0 5535 261 70 35 chr4 22083008 22083061 -180245286 + L1M2a LINE L1 3 53 -7114 363 60 0 0 chr4 22083061 22083111 -180245236 + (CA)n Simple_repeat Simple_repeat 1 50 0 5535 261 70 35 chr4 22083111 22086660 -180241687 + L1M2a LINE L1 53 3475 -3692 491 115 11 73 chr4 22086686 22086877 -180241470 + (TA)n Simple_repeat Simple_repeat 1 179 0 2327 219 38 25 chr4 22086895 22087356 -180240991 + L1M2a LINE L1 3480 3954 -3213 2330 79 3 3 chr4 22087356 22087661 -180240686 + AluY SINE Alu 1 305 -6 2327 219 38 25 chr4 22087661 22087890 -180240457 + L1M2a LINE L1 3954 4179 -2988 1315 193 0 92 chr4 22087920 22088246 -180240101 + AluJb SINE Alu 9 304 -8 351 65 0 0 chr4 22088246 22088292 -180240055 + (GA)n Simple_repeat Simple_repeat 1 46 0 378 42 0 0 chr4 22088292 22088340 -180240007 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 533 298 96 10 chr4 22088438 22088636 -180239711 + MIR SINE MIR 30 244 -18 428 341 30 0 chr4 22088663 22088830 -180239517 - MIR SINE MIR -5 257 86 767 179 0 14 chr4 22089754 22089894 -180238453 - FLAM_C SINE Alu 0 143 6 380 291 70 70 chr4 22090423 22090708 -180237639 - HAL1b LINE L1 -975 373 89 26 50 0 0 chr4 22091065 22091105 -180237242 + AT_rich Low_complexity Low_complexity 1 40 0 697 236 126 5 chr4 22091963 22092154 -180236193 + MER58C DNA MER1_type 2 215 0 201 39 0 0 chr4 22095028 22095054 -180233293 + (GA)n Simple_repeat Simple_repeat 1 26 0 413 273 20 53 chr4 22095876 22096026 -180232321 - MER5A DNA MER1_type -10 179 35 282 56 0 0 chr4 22096043 22096079 -180232268 + (TG)n Simple_repeat Simple_repeat 1 36 0 218 383 61 9 chr4 22096190 22096305 -180232042 - L2 LINE L2 -575 2739 2619 496 293 56 13 chr4 22097094 22097446 -180230901 + MLT1L LTR MaLR 82 478 -137 231 61 0 0 chr4 22097485 22097518 -180230829 + (TG)n Simple_repeat Simple_repeat 2 34 0 293 331 48 6 chr4 22098014 22098180 -180230167 + MIR SINE MIR 90 262 0 486 274 147 32 chr4 22098663 22098820 -180229527 + MER5A DNA MER1_type 15 189 0 298 216 91 23 chr4 22099052 22099140 -180229207 + MIR SINE MIR 24 117 -145 180 348 37 22 chr4 22100332 22100467 -180227880 - MIR SINE MIR -60 202 66 2203 118 0 16 chr4 22100530 22100834 -180227513 + AluSx SINE Alu 1 299 -13 225 335 78 30 chr4 22102624 22102791 -180225556 - MIR SINE MIR -17 245 71 227 275 29 0 chr4 22103419 22103488 -180224859 - MIR SINE MIR -6 256 186 2065 112 7 7 chr4 22104407 22104710 -180223637 - AluSq SINE Alu -10 303 1 227 310 10 20 chr4 22104711 22104811 -180223536 + MIR SINE MIR 164 262 0 192 152 0 0 chr4 22105219 22105252 -180223095 + L2 LINE L2 3279 3311 -2 229 372 68 14 chr4 22105470 22105618 -180222729 - MIR3 SINE MIR -11 197 42 340 361 45 8 chr4 22105626 22105759 -180222588 - MIR3 SINE MIR -3 205 68 4748 55 26 0 chr4 22106135 22106770 -180221577 + L1PA5 LINE L1 5522 6172 0 984 211 10 19 chr4 22106770 22106978 -180221369 + MER77 LTR ERV1 393 598 -7 809 210 99 8 chr4 22107231 22107493 -180220854 - AluSx SINE Alu -14 288 3 11900 68 8 3 chr4 22108682 22111053 -180217294 + L1P LINE L1 1756 4145 -2001 799 175 13 0 chr4 22111184 22111338 -180217009 + MLT1A2 LTR MaLR 1 156 -218 366 169 40 8 chr4 22111357 22111481 -180216866 + CT-rich Low_complexity Low_complexity 1 128 0 858 176 33 22 chr4 22111503 22111685 -180216662 + MLT1A2 LTR MaLR 189 372 -2 24 0 0 0 chr4 22111703 22111727 -180216620 + AT_rich Low_complexity Low_complexity 1 24 0 761 307 38 4 chr4 22111803 22112041 -180216306 - MIR SINE MIR -1 261 16 962 232 101 37 chr4 22112055 22112491 -180215856 - MLT1C LTR MaLR 0 467 4 226 313 16 8 chr4 22112531 22112659 -180215688 + MLT1A1 LTR MaLR 15 143 -222 14385 27 6 4 chr4 22113337 22115372 -180212975 - L1P2 LINE L1 -558 5597 3560 1096 198 27 31 chr4 22115476 22115733 -180212614 + MLT1A1 LTR MaLR 99 354 -11 200 326 58 0 chr4 22115745 22115831 -180212516 - L2 LINE L2 -619 2695 2605 744 234 41 20 chr4 22115891 22116088 -180212259 + MIR SINE MIR 3 203 -59 26 82 0 0 chr4 22116234 22116295 -180212052 + AT_rich Low_complexity Low_complexity 1 61 0 2289 104 0 0 chr4 22116370 22116657 -180211690 + AluSc SINE Alu 1 287 -22 207 0 0 0 chr4 22117197 22117220 -180211127 + (T)n Simple_repeat Simple_repeat 1 23 0 766 361 81 48 chr4 22117226 22118265 -180210082 - L2 LINE L2 -624 2690 1597 1567 149 17 64 chr4 22118265 22118599 -180209748 + AluJo SINE Alu 3 322 0 766 361 81 48 chr4 22118599 22118841 -180209506 - L2 LINE L2 -1717 1597 1365 520 325 75 13 chr4 22118958 22119186 -180209161 + MLT1G LTR MaLR 35 276 -314 1433 219 53 35 chr4 22119188 22119563 -180208784 - MLT1B LTR MaLR 0 390 9 2178 112 0 0 chr4 22120120 22120416 -180207931 + AluSc SINE Alu 4 299 -10 2450 94 0 0 chr4 22121168 22121477 -180206870 - AluY SINE Alu -2 309 1 256 390 73 12 chr4 22121612 22121776 -180206571 + L2 LINE L2 2550 2723 -591 978 249 24 37 chr4 22121785 22122082 -180206265 + L2 LINE L2 2175 2467 -847 351 277 39 69 chr4 22122085 22122215 -180206132 - MIR SINE MIR -135 127 2 253 398 8 8 chr4 22122494 22122622 -180205725 + MIR3 SINE MIR 34 161 -47 413 235 142 29 chr4 22123175 22123356 -180204991 - MIR SINE MIR -56 206 9 24 0 0 0 chr4 22124721 22124745 -180203602 + AT_rich Low_complexity Low_complexity 1 24 0 229 274 70 27 chr4 22125028 22125169 -180203178 + MIR SINE MIR 56 207 -55 1446 105 0 25 chr4 22125300 22125521 -180202826 + AluSg/x SINE Alu 95 312 0 351 295 102 12 chr4 22126319 22126485 -180201862 - L2 LINE L2 -16 3297 3117 500 286 77 43 chr4 22127087 22127321 -180201026 + L2 LINE L2 1914 2155 -1159 618 324 29 12 chr4 22127331 22127572 -180200775 + MIR SINE MIR 12 256 -6 1333 344 69 20 chr4 22127584 22128410 -180199937 + L2 LINE L2 2179 3047 -266 2038 155 6 3 chr4 22128483 22128824 -180199523 - MLT2C1 LTR ERVL -55 342 1 290 333 39 34 chr4 22128856 22129060 -180199287 + L2 LINE L2 3098 3302 -11 26 0 0 0 chr4 22129627 22129653 -180198694 + AT_rich Low_complexity Low_complexity 1 26 0 225 0 0 0 chr4 22129666 22129691 -180198656 + (TA)n Simple_repeat Simple_repeat 1 25 0 1927 149 3 26 chr4 22129691 22129993 -180198354 - AluSx SINE Alu -17 295 1 329 248 114 0 chr4 22130426 22130573 -180197774 + MLT1J2 LTR MaLR 9 148 -302 311 283 0 0 chr4 22131303 22131423 -180196924 + (TA)n Simple_repeat Simple_repeat 2 121 0 197 83 28 0 chr4 22131482 22131518 -180196829 + (TA)n Simple_repeat Simple_repeat 2 38 0 218 233 0 0 chr4 22131642 22131685 -180196662 + (TAA)n Simple_repeat Simple_repeat 3 45 0 242 231 204 20 chr4 22131686 22131833 -180196514 - MIR SINE MIR 0 262 89 2217 200 155 10 chr4 22131891 22132382 -180195965 + MER68 LTR ERV1 1 562 0 708 300 103 13 chr4 22132422 22132802 -180195545 + MLT1J2 LTR MaLR 37 450 0 409 343 87 27 chr4 22133252 22133471 -180194876 - L2 LINE L2 0 3272 3041 378 341 40 48 chr4 22133482 22133834 -180194513 + L2 LINE L2 2432 2780 -534 187 294 119 57 chr4 22134256 22134433 -180193914 - L2 LINE L2 -262 3010 2823 308 317 0 0 chr4 22134468 22134550 -180193797 + L2 LINE L2 3226 3307 -6 243 0 0 0 chr4 22134584 22134611 -180193736 + (A)n Simple_repeat Simple_repeat 1 27 0 236 349 65 62 chr4 22134611 22134914 -180193433 - L2 LINE L2 -561 2753 2447 1973 152 7 0 chr4 22134914 22135210 -180193137 - AluSx SINE Alu -14 298 1 236 349 65 62 chr4 22135210 22135247 -180193100 - L2 LINE L2 -867 2447 2412 1777 159 0 0 chr4 22135450 22135733 -180192614 + AluSx SINE Alu 1 283 -29 198 0 0 0 chr4 22135737 22135759 -180192588 + (CACAA)n Simple_repeat Simple_repeat 4 25 0 246 184 0 0 chr4 22135809 22135858 -180192489 - MADE1 DNA Mariner 0 80 32 740 122 0 0 chr4 22136160 22136292 -180192055 + AluSg/x SINE Alu 176 307 0 460 136 0 12 chr4 22136342 22136423 -180191924 - MADE1 DNA Mariner 0 80 1 184 339 15 0 chr4 22137002 22137067 -180191280 - MIR SINE MIR -61 147 82 678 228 29 19 chr4 22137935 22138141 -180190206 + LTR7 LTR ERV1 238 445 -5 835 290 60 39 chr4 22138204 22138587 -180189760 + MLT1E3 LTR MaLR 200 621 -3 212 86 29 0 chr4 22139189 22139224 -180189123 + (CA)n Simple_repeat Simple_repeat 2 37 0 668 286 17 0 chr4 22139348 22139523 -180188824 + MER5B DNA MER1_type 1 178 0 942 175 0 29 chr4 22139862 22140033 -180188314 + MER5A DNA MER1_type 1 166 -23 291 342 12 19 chr4 22140806 22141053 -180187294 + GA-rich Low_complexity Low_complexity 1 245 0 229 383 25 25 chr4 22142336 22142456 -180185891 + L2 LINE L2 3132 3251 -21 4506 88 32 1 chr4 22143569 22144230 -180184117 - L1PA11 LINE L1 0 6174 5494 695 165 0 0 chr4 22144434 22144577 -180183770 + AluJb SINE Alu 167 309 0 7809 171 11 9 chr4 22144633 22147180 -180181167 + L1PB1 LINE L1 3607 6150 -1 277 269 0 0 chr4 22147549 22147627 -180180720 - MER103 DNA DNA -87 79 2 394 304 48 18 chr4 22149909 22150077 -180178270 - MIR SINE MIR -8 254 82 224 352 67 0 chr4 22150265 22150370 -180177977 + L2 LINE L2 1753 1864 -1450 406 139 212 16 chr4 22150373 22150463 -180177884 + MLT1B LTR MaLR 6 109 -265 2441 82 3 9 chr4 22150463 22150778 -180177569 + AluSq SINE Alu 1 313 0 406 139 212 16 chr4 22150778 22150794 -180177553 + MLT1B LTR MaLR 109 121 -253 714 185 17 5 chr4 22150816 22150965 -180177382 + MLT1B LTR MaLR 240 390 0 507 232 40 81 chr4 22151058 22151256 -180177091 - MIR SINE MIR -65 197 8 580 281 9 62 chr4 22151295 22151519 -180176828 - MIR SINE MIR -44 218 7 2138 145 6 0 chr4 22152663 22152974 -180175373 - AluSq SINE Alu 0 313 1 2066 133 0 0 chr4 22154507 22154823 -180173524 - AluSg SINE Alu 0 318 3 3115 106 12 33 chr4 22155190 22155566 -180172781 + L1PA13 LINE L1 5678 6043 -120 3230 162 32 68 chr4 22155566 22156283 -180172064 - LTR8 LTR ERV1 0 691 1 3115 106 12 33 chr4 22156283 22156395 -180171952 + L1PA13 LINE L1 6043 6156 -7 312 311 0 0 chr4 22156482 22156572 -180171775 + L1MC4 LINE L1 6614 6703 -1339 350 293 0 13 chr4 22156582 22156739 -180171608 + (TATATG)n Simple_repeat Simple_repeat 5 159 0 239 259 47 0 chr4 22156751 22156836 -180171511 + L1MC4 LINE L1 6615 6703 -1339 213 233 33 0 chr4 22156837 22156927 -180171420 + (TA)n Simple_repeat Simple_repeat 1 93 0 489 257 74 64 chr4 22156928 22157130 -180171217 - MIR SINE MIR -57 205 2 268 366 24 16 chr4 22157620 22157743 -180170604 - MIR SINE MIR -108 154 31 26 0 0 0 chr4 22157939 22157965 -180170382 + AT_rich Low_complexity Low_complexity 1 26 0 2062 203 67 9 chr4 22157966 22158502 -180169845 + L1MA9 LINE L1 5704 6270 -42 7506 195 18 19 chr4 22158532 22160271 -180168076 + L1PA16 LINE L1 3477 5207 -959 2372 47 40 0 chr4 22160271 22160569 -180167778 + L1PA4 LINE L1 5846 6155 0 7506 195 18 19 chr4 22160569 22161527 -180166820 + L1PA16 LINE L1 5207 6165 -1 273 230 137 108 chr4 22161847 22161986 -180166361 + MIR SINE MIR 108 250 -12 204 146 0 49 chr4 22161954 22161995 -180166352 + L2 LINE L2 3264 3302 -11 * 266 323 0 10 chr4 22162148 22162247 -180166100 + MIR SINE MIR 92 189 -73 743 309 42 8 chr4 22162334 22162570 -180165777 + MIR SINE MIR 18 261 -1 321 259 101 29 chr4 22162533 22162672 -180165675 - MIR SINE MIR -33 229 81 * 2092 135 125 13 chr4 22162672 22163057 -180165290 + MSTA LTR MaLR 1 428 0 530 269 8 8 chr4 22163656 22163790 -180164557 - L2 LINE L2 0 3313 3180 516 344 11 0 chr4 22163784 22163967 -180164380 - L2 LINE L2 -981 2333 2149 * 21 0 0 0 chr4 22163998 22164019 -180164328 + AT_rich Low_complexity Low_complexity 1 21 0 348 356 68 5 chr4 22165702 22165907 -180162440 + MIR SINE MIR 2 219 -43 755 286 64 5 chr4 22166599 22166819 -180161528 - MIR SINE MIR 0 262 30 272 292 42 46 chr4 22167130 22167305 -180161042 + MIR SINE MIR 13 189 -73 678 234 59 42 chr4 22167790 22168029 -180160318 + MIR SINE MIR 15 257 -5 182 333 0 42 chr4 22168846 22168918 -180159429 - MIR SINE MIR -74 134 66 2266 73 7 23 chr4 22169110 22169410 -180158937 - AluSc SINE Alu -14 295 1 399 305 134 6 chr4 22169557 22169721 -180158626 + LTR33 LTR ERVL 39 223 -298 550 266 126 22 chr4 22169752 22169974 -180158373 + LTR33 LTR ERVL 276 520 -1 315 295 98 18 chr4 22169997 22170109 -180158238 + MIR SINE MIR 22 142 -66 210 383 0 26 chr4 22170341 22170456 -180157891 + MIR SINE MIR 33 144 -118 283 259 306 7 chr4 22170622 22170769 -180157578 + MIR SINE MIR 13 203 -59 449 290 140 45 chr4 22170878 22171213 -180157134 + L2 LINE L2 2945 3311 -2 270 286 64 64 chr4 22172383 22172649 -180155698 + L1ME LINE L1 5616 5881 -240 347 196 105 98 chr4 22173526 22173587 -180154760 + L2 LINE L2 3168 3227 -86 186 71 0 0 chr4 22173587 22173615 -180154732 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 347 196 105 98 chr4 22173615 22173696 -180154651 + L2 LINE L2 3227 3311 -2 1815 154 85 6 chr4 22174219 22174550 -180153797 + MLT2C1 LTR ERVL 1 357 -40 261 129 43 29 chr4 22174552 22174622 -180153725 + (TATATG)n Simple_repeat Simple_repeat 1 71 0 279 105 0 0 chr4 22174628 22174666 -180153681 + MLT2C1 LTR ERVL 360 397 0 312 283 148 49 chr4 22176381 22176604 -180151743 + L2 LINE L2 2701 2945 -369 192 314 0 0 chr4 22176639 22176690 -180151657 + L2 LINE L2 3222 3272 0 1252 76 5 103 chr4 22176761 22176984 -180151363 - L1PA8 LINE L1 -13 6159 5959 2170 119 24 0 chr4 22177246 22177540 -180150807 - AluSx SINE Alu -11 301 1 3274 134 59 35 chr4 22177648 22178239 -180150108 + LTR8A LTR ERV1 123 727 0 252 268 103 21 chr4 22178239 22178336 -180150011 + MIR SINE MIR 155 259 -3 315 341 39 16 chr4 22178364 22178493 -180149854 + L2 LINE L2 2916 3047 -225 426 348 59 16 chr4 22178629 22178951 -180149396 + L1MEc LINE L1 772 1107 -6031 1478 290 98 27 chr4 22179391 22179944 -180148403 + L1MEc LINE L1 1331 1843 -5295 234 0 0 0 chr4 22179944 22179970 -180148377 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1478 290 98 27 chr4 22179970 22180792 -180147555 + L1MEc LINE L1 1843 2991 -4147 316 315 22 0 chr4 22180800 22180889 -180147458 + L2 LINE L2 3222 3312 -1 524 307 27 70 chr4 22182654 22182983 -180145364 - L2 LINE L2 0 3313 2999 189 217 22 0 chr4 22183017 22183063 -180145284 + L2 LINE L2 3261 3307 -6 2144 107 0 0 chr4 22183865 22184170 -180144177 + AluSc SINE Alu 1 305 0 581 88 0 0 chr4 22184306 22184386 -180143961 - MADE1 DNA Mariner 0 80 1 205 189 16 74 chr4 22184916 22185106 -180143241 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 296 291 55 39 chr4 22185526 22185653 -180142694 - MER94 DNA DNA 0 134 6 210 313 30 0 chr4 22185894 22185961 -180142386 + MIR SINE MIR 53 121 -141 1924 153 0 3 chr4 22185963 22186264 -180142083 - AluJo SINE Alu -12 300 1 25 0 0 0 chr4 22186406 22186431 -180141916 + AT_rich Low_complexity Low_complexity 1 25 0 1951 100 0 0 chr4 22186462 22186712 -180141635 - AluSq SINE Alu -54 259 10 432 263 8 34 chr4 22187101 22187219 -180141128 - L2 LINE L2 -499 2815 2701 189 288 38 50 chr4 22187258 22187338 -180141009 - L2 LINE L2 -86 3227 3149 369 291 108 44 chr4 22187456 22187659 -180140688 - MIR SINE MIR -44 218 3 245 233 68 68 chr4 22187946 22188049 -180140298 + MIR SINE MIR 121 223 -39 188 296 91 45 chr4 22188177 22188265 -180140082 - L2 LINE L2 0 3313 3222 278 285 41 65 chr4 22188302 22188425 -180139922 + MER5B DNA MER1_type 9 128 -50 533 298 29 22 chr4 22188477 22188747 -180139600 + Charlie8 DNA MER1_type 3 265 -2152 327 193 0 0 chr4 22188777 22188834 -180139513 + Charlie8 DNA MER1_type 1351 1407 -1010 1768 224 57 9 chr4 22188873 22189314 -180139033 + MLT1C LTR MaLR 6 467 0 319 294 25 0 chr4 22189830 22189949 -180138398 + L2 LINE L2 2934 3055 -258 1592 168 28 88 chr4 22190021 22190419 -180137928 + MLT1B LTR MaLR 1 374 -16 2465 171 77 21 chr4 22190419 22190898 -180137449 + MLT2B2 LTR ERVL 1 506 -9 484 281 54 30 chr4 22191060 22191227 -180137120 + L2 LINE L2 3120 3290 -23 222 106 30 30 chr4 22191281 22191347 -180137000 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 285 325 122 21 chr4 22191364 22191552 -180136795 - MIR SINE MIR -7 255 49 308 289 48 0 chr4 22192937 22193020 -180135327 + L2 LINE L2 3227 3313 0 410 264 186 0 chr4 22193894 22194023 -180134324 + MER5A DNA MER1_type 36 188 -1 510 230 79 0 chr4 22194207 22194333 -180134014 + MIR SINE MIR 56 191 -71 2248 122 0 0 chr4 22195048 22195360 -180132987 - AluSq SINE Alu -1 312 1 568 101 0 0 chr4 22195904 22195983 -180132364 - MER4E LTR ERV1 -154 612 534 2588 102 3 0 chr4 22196010 22196364 -180131983 + MER4E LTR ERV1 412 766 0 315 164 0 0 chr4 22196848 22196909 -180131438 + (TA)n Simple_repeat Simple_repeat 1 61 0 195 100 0 0 chr4 22197434 22197464 -180130883 + (GGA)n Simple_repeat Simple_repeat 3 32 0 1451 161 28 35 chr4 22197622 22197907 -180130440 - MLT1B LTR MaLR 0 390 108 1930 151 0 31 chr4 22198041 22198360 -180129987 - AluSg SINE Alu -1 309 1 609 175 26 0 chr4 22198424 22198538 -180129809 - MLT1B LTR MaLR -272 118 2 360 200 30 0 chr4 22198586 22198686 -180129661 + CT-rich Low_complexity Low_complexity 2 104 0 194 281 16 78 chr4 22199368 22199496 -180128851 - L2 LINE L2 -849 2465 2346 * 413 245 38 19 chr4 22199495 22199601 -180128746 + L2 LINE L2 3200 3307 -6 335 311 60 20 chr4 22199879 22200030 -180128317 + MIR SINE MIR 52 208 -54 1260 52 0 0 chr4 22200256 22200409 -180127938 - AluY SINE Alu -10 301 149 2274 94 10 0 chr4 22200636 22200935 -180127412 - AluSg SINE Alu -8 302 1 453 296 21 32 chr4 22201289 22201475 -180126872 + MIR SINE MIR 79 262 0 402 235 66 12 chr4 22201520 22201686 -180126661 + L1ME4a LINE L1 5722 5896 -225 231 133 0 0 chr4 22202798 22202843 -180125504 + (TG)n Simple_repeat Simple_repeat 2 46 0 820 206 15 15 chr4 22204760 22204964 -180123383 + L1MB5 LINE L1 4171 4374 -1772 4066 188 30 29 chr4 22205013 22206101 -180122246 + L1MB5 LINE L1 5086 6173 -1 749 219 93 61 chr4 22206211 22206414 -180121933 + MIR SINE MIR 7 221 -41 2443 84 0 3 chr4 22206414 22206723 -180121624 + AluSq SINE Alu 1 308 -5 749 219 93 61 chr4 22206723 22206765 -180121582 + MIR SINE MIR 221 260 -2 1769 166 75 7 chr4 22206810 22207117 -180121230 + MLT1A1 LTR MaLR 23 350 -15 23 0 0 0 chr4 22207121 22207144 -180121203 + AT_rich Low_complexity Low_complexity 1 23 0 204 171 24 0 chr4 22208215 22208256 -180120091 + (TA)n Simple_repeat Simple_repeat 1 42 0 612 0 0 0 chr4 22209526 22209594 -180118753 + (TA)n Simple_repeat Simple_repeat 1 68 0 1879 117 33 4 chr4 22209597 22209870 -180118477 - AluSc SINE Alu -28 281 1 342 200 50 0 chr4 22210254 22210334 -180118013 + AluS SINE Alu 1 84 -219 199 330 230 21 chr4 22210647 22210886 -180117461 - L3b LINE CR1 0 1583 1295 338 330 9 0 chr4 22211105 22211211 -180117136 - L2 LINE L2 -10 3303 3197 2412 75 0 0 chr4 22211968 22212273 -180116074 + AluY SINE Alu 4 308 -3 184 154 0 51 chr4 22212323 22212362 -180115985 + L2 LINE L2 3268 3304 -9 231 312 44 92 chr4 22213196 22213253 -180115094 - L2 LINE L2 -568 2746 2688 2241 99 10 0 chr4 22213253 22213557 -180114790 + AluSg SINE Alu 1 307 -3 231 312 44 92 chr4 22213557 22213749 -180114598 - L2 LINE L2 -626 2688 2509 342 200 44 59 chr4 22214436 22214571 -180113776 + Charlie2 DNA MER1_type 2714 2846 -16 210 313 0 30 chr4 22214606 22214673 -180113674 + MIR SINE MIR 31 95 -113 1994 196 21 18 chr4 22214677 22215060 -180113287 + MLT2B1 LTR ERVL 1 376 -38 462 114 0 0 chr4 22215060 22215130 -180113217 + (TCTA)n Simple_repeat Simple_repeat 2 71 0 1994 196 21 18 chr4 22215130 22215170 -180113177 + MLT2B1 LTR ERVL 376 414 0 253 308 0 0 chr4 22215177 22215242 -180113105 + MIR3 SINE MIR 98 162 -46 192 125 0 0 chr4 22215497 22215529 -180112818 + (TG)n Simple_repeat Simple_repeat 1 32 0 286 370 44 5 chr4 22215546 22215749 -180112598 - MARNA DNA Mariner -366 220 10 216 195 169 13 chr4 22217056 22217133 -180111214 + L2 LINE L2 3184 3272 0 206 333 173 0 chr4 22217339 22217414 -180110933 - L2 LINE L2 -48 3224 3137 380 219 135 0 chr4 22217597 22217693 -180110654 - MER105 DNA DNA -45 159 51 3215 106 101 4 chr4 22217773 22218266 -180110081 + MER41A LTR ERV1 14 554 0 2267 212 27 25 chr4 22218297 22218778 -180109569 - MER68 LTR ERV1 -80 482 1 2050 131 6 22 chr4 22219506 22219820 -180108527 - AluSg SINE Alu -1 309 1 9648 207 54 19 chr4 22220838 22223720 -180104627 + L1MA9 LINE L1 2806 5797 -515 327 65 0 0 chr4 22223720 22223766 -180104581 + (CA)n Simple_repeat Simple_repeat 2 47 0 9648 207 54 19 chr4 22223766 22223782 -180104565 + L1MA9 LINE L1 5797 5811 -501 575 206 0 0 chr4 22223883 22223980 -180104367 - MER7A DNA MER2_type -251 95 1 634 193 28 42 chr4 22223980 22224192 -180104155 + L1MA9 LINE L1 5905 6113 -199 236 238 0 81 chr4 22224343 22224528 -180103819 + (TATAA)n Simple_repeat Simple_repeat 3 172 0 * 278 268 36 18 chr4 22224459 22224627 -180103720 + (TATAG)n Simple_repeat Simple_repeat 4 174 0 210 270 11 65 chr4 22224541 22224726 -180103621 + (TATAA)n Simple_repeat Simple_repeat 3 177 0 * 406 219 73 46 chr4 22224750 22224901 -180103446 + L1MA9 LINE L1 6119 6273 -39 2013 153 7 0 chr4 22225186 22225493 -180102854 + AluSx SINE Alu 3 311 -1 180 111 0 0 chr4 22225957 22225984 -180102363 + (A)n Simple_repeat Simple_repeat 1 27 0 225 383 30 35 chr4 22226593 22226823 -180101524 + L2 LINE L2 1942 2170 -1144 * 585 208 28 56 chr4 22226817 22226995 -180101352 - L2 LINE L2 -42 3271 3099 1332 221 83 47 chr4 22226996 22227439 -180100908 - MLT1C LTR MaLR 0 467 9 266 333 176 15 chr4 22227502 22227763 -180100584 + L2 LINE L2 2301 2603 -711 345 280 63 14 chr4 22228130 22228273 -180100074 - MIR SINE MIR -19 243 94 229 274 0 0 chr4 22228568 22228619 -180099728 - L2 LINE L2 0 3272 3222 2542 77 0 0 chr4 22229443 22229754 -180098593 - AluY SINE Alu 0 311 1 193 390 38 9 chr4 22231104 22231317 -180097030 + L2 LINE L2 1763 1981 -1333 2110 115 14 0 chr4 22231584 22231892 -180096455 - AluSc SINE Alu 0 312 1 326 373 84 3 chr4 22231894 22232178 -180096169 + L2 LINE L2 2356 2662 -652 367 344 60 67 chr4 22232316 22232647 -180095700 + L2 LINE L2 2924 3252 -20 361 348 70 0 chr4 22233110 22233297 -180095050 + MIR SINE MIR 21 220 -42 390 253 129 47 chr4 22234156 22234326 -180094021 - L2 LINE L2 -13 3300 3117 216 336 136 9 chr4 22234517 22234627 -180093720 - MIR SINE MIR -115 147 24 430 291 8 8 chr4 22234711 22234838 -180093509 - MIR SINE MIR -48 214 88 2550 74 0 0 chr4 22234881 22235192 -180093155 - AluSq SINE Alu -2 311 1 506 290 118 5 chr4 22235728 22235914 -180092433 - MIR SINE MIR -15 247 41 250 233 89 44 chr4 22236230 22236320 -180092027 + MIR SINE MIR 87 180 -82 432 198 167 62 chr4 22237323 22237485 -180090862 + MER5A DNA MER1_type 11 189 0 435 346 135 10 chr4 22238240 22238750 -180089597 - L2 LINE L2 0 3313 2745 181 238 0 24 chr4 22238897 22238939 -180089408 - MIR SINE MIR -14 248 208 221 336 36 27 chr4 22239108 22239218 -180089129 + MER5A DNA MER1_type 52 162 -27 1992 140 0 0 chr4 22239403 22239689 -180088658 - AluSx SINE Alu -26 286 1 349 267 119 20 chr4 22240112 22240213 -180088134 + MIR SINE MIR 40 150 -58 5196 22 0 0 chr4 22241630 22242251 -180086096 + L1PA3 LINE L1 5544 6164 0 237 159 114 11 chr4 22242266 22242354 -180085993 - MER69 DNA AcHobo -124 2402 2306 770 243 11 23 chr4 22243160 22243337 -180085010 + MLT1A2 LTR MaLR 17 191 -183 770 211 62 10 chr4 22243370 22243564 -180084783 + MLT1B LTR MaLR 187 390 0 236 338 15 0 chr4 22244191 22244259 -180084088 + L2 LINE L2 3228 3296 -17 29 0 0 0 chr4 22244901 22244930 -180083417 + AT_rich Low_complexity Low_complexity 1 29 0 1779 207 19 11 chr4 22244975 22245337 -180083010 - MLT1A1 LTR MaLR 0 365 1 198 267 0 144 chr4 22245562 22245612 -180082735 + L2 LINE L2 3237 3270 -43 1644 156 27 34 chr4 22245612 22245907 -180082440 + AluSx SINE Alu 3 295 -17 198 267 0 144 chr4 22245907 22245946 -180082401 + L2 LINE L2 3270 3313 0 441 331 40 0 chr4 22246886 22247034 -180081313 - MER117 DNA MER1_type -43 154 1 218 254 17 17 chr4 22247540 22247599 -180080748 - L3 LINE CR1 -513 1064 1006 312 301 44 22 chr4 22247644 22247780 -180080567 + MIR3 SINE MIR 55 193 -15 1953 94 0 4 chr4 22248481 22248736 -180079611 + AluY SINE Alu 39 292 -19 219 204 0 54 chr4 22249239 22249332 -180079015 + A-rich Low_complexity Low_complexity 3 90 0 393 255 10 10 chr4 22249615 22249713 -180078634 - MIR SINE MIR -118 144 47 489 317 154 9 chr4 22251975 22252202 -180076145 + MIR SINE MIR 3 262 0 377 306 223 8 chr4 22252895 22253137 -180075210 - L2 LINE L2 0 3313 3020 214 273 73 0 chr4 22255154 22255209 -180073138 + MIR SINE MIR 94 152 -110 2144 117 3 19 chr4 22255261 22255577 -180072770 + AluSx SINE Alu 1 311 -1 23 0 0 0 chr4 22256116 22256139 -180072208 + AT_rich Low_complexity Low_complexity 1 23 0 279 308 119 53 chr4 22256293 22256520 -180071827 - MIR SINE MIR -12 250 9 201 344 86 20 chr4 22258715 22258866 -180069481 + MIR SINE MIR 7 167 -95 373 375 58 17 chr4 22259043 22259283 -180069064 - MIR SINE MIR -11 251 2 7318 46 3 0 chr4 22259503 22261161 -180067186 + L1PA6 LINE L1 4492 6153 -1 283 315 113 6 chr4 22261702 22261767 -180066580 + L1ME LINE L1 5516 5573 -548 252 59 0 0 chr4 22261767 22261801 -180066546 + (TG)n Simple_repeat Simple_repeat 1 34 0 283 315 113 6 chr4 22261801 22262062 -180066285 + L1ME LINE L1 5573 5877 -244 2443 58 0 0 chr4 22262169 22262463 -180065884 - AluY SINE Alu -17 294 1 874 183 22 79 chr4 22262712 22262941 -180065406 + MER20 DNA MER1_type 4 219 0 25 0 0 0 chr4 22262955 22262980 -180065367 + AT_rich Low_complexity Low_complexity 1 25 0 319 354 91 52 chr4 22263094 22263458 -180064889 - L2 LINE L2 -83 3189 2812 6991 146 16 15 chr4 22263623 22264875 -180063472 - Tigger1 DNA MER2_type 0 2418 1166 239 196 43 43 chr4 22264888 22264980 -180063367 - LTR30 LTR ERV1 -79 643 552 1376 144 0 0 chr4 22265007 22265236 -180063111 + Tigger1 DNA MER2_type 1634 1862 -556 6383 144 28 19 chr4 22265236 22266380 -180061967 - Tigger1 DNA MER2_type -1259 1159 6 193 311 14 40 chr4 22267012 22267086 -180061261 + L2 LINE L2 3201 3272 0 696 259 47 30 chr4 22267165 22267401 -180060946 - MIR SINE MIR -11 251 12 930 252 102 16 chr4 22267970 22268284 -180060063 + MER58B DNA MER1_type 1 341 0 840 219 39 6 chr4 22268376 22268554 -180059793 + MER5A DNA MER1_type 1 184 -5 388 311 132 20 chr4 22268677 22268843 -180059504 - MIR SINE MIR -62 146 3 2147 207 50 32 chr4 22268861 22269057 -180059290 + MER90 LTR ERV1 2 193 -382 2253 114 3 0 chr4 22269057 22269355 -180058992 - AluSp SINE Alu -14 299 1 2147 207 50 32 chr4 22269355 22269718 -180058629 + MER90 LTR ERV1 193 571 -4 189 340 0 0 chr4 22270629 22270679 -180057668 - L2 LINE L2 -20 3252 3203 391 361 21 82 chr4 22270853 22271144 -180057203 + L2 LINE L2 2993 3265 -7 226 247 86 21 chr4 22271174 22271267 -180057080 + L1MC5 LINE L1 7833 7931 -30 213 240 60 0 chr4 22271564 22271614 -180056733 + L2 LINE L2 2598 2650 -664 2514 56 0 0 chr4 22271614 22271920 -180056427 - AluY SINE Alu -5 306 1 225 287 56 98 chr4 22272376 22272519 -180055828 + L2 LINE L2 3155 3291 -22 315 362 33 20 chr4 22273725 22273877 -180054470 + MIR3 SINE MIR 6 159 -49 317 280 65 65 chr4 22277376 22277590 -180050757 + MIR SINE MIR 40 253 -9 279 283 0 147 chr4 22277541 22277739 -180050608 - MIR SINE MIR 0 262 94 * 255 344 102 8 chr4 22277781 22277909 -180050438 - L2 LINE L2 0 3272 3133 323 302 139 0 chr4 22278109 22278278 -180050069 + MIR SINE MIR 36 226 -36 442 182 114 0 chr4 22279361 22279449 -180048898 + FLAM_C SINE Alu 21 118 -25 464 318 35 12 chr4 22279684 22279857 -180048490 - MIR SINE MIR -35 227 51 413 314 73 65 chr4 22279871 22279941 -180048406 - MIR SINE MIR 0 262 194 2444 59 0 10 chr4 22279941 22280247 -180048100 + AluY SINE Alu 1 303 -8 413 314 73 65 chr4 22280247 22280424 -180047923 - MIR SINE MIR -68 194 13 878 206 93 102 chr4 22280932 22281499 -180046848 + MER34B LTR ERV1 4 565 0 28 29 0 0 chr4 22281527 22281562 -180046785 + AT_rich Low_complexity Low_complexity 1 35 0 1780 172 40 0 chr4 22281912 22282208 -180046139 + AluJb SINE Alu 1 308 -4 2091 138 136 5 chr4 22333174 22333550 -179994797 + MSTA LTR MaLR 4 428 0 466 231 35 14 chr4 22333551 22333694 -179994653 - MER104 DNA Tc2 -8 172 27 261 301 66 66 chr4 22333706 22333902 -179994445 + L2 LINE L2 2524 2719 -595 273 277 102 97 chr4 22334026 22334387 -179993960 + L2 LINE L2 2949 3311 -2 22 0 0 0 chr4 22334676 22334698 -179993649 + AT_rich Low_complexity Low_complexity 1 22 0 224 346 0 0 chr4 22335240 22335318 -179993029 - L2 LINE L2 -5 3267 3190 218 467 0 0 chr4 22335435 22335540 -179992807 - MIR SINE MIR -60 148 44 1939 175 20 6 chr4 22335628 22335983 -179992364 - MLT1A1 LTR MaLR -2 363 4 431 293 24 8 chr4 22335998 22336121 -179992226 - MIR SINE MIR -106 156 32 273 277 50 10 chr4 22336201 22336302 -179992045 - MIR SINE MIR -4 258 154 2399 74 0 0 chr4 22337622 22337920 -179990427 + AluY SINE Alu 1 298 -13 1131 252 41 21 chr4 22338365 22338655 -179989692 + MLT1F LTR MaLR 8 303 -239 439 250 129 0 chr4 22338658 22338782 -179989565 - MIR SINE MIR -121 141 2 22 0 0 0 chr4 22340369 22340391 -179987956 + AT_rich Low_complexity Low_complexity 1 22 0 1426 192 17 10 chr4 22340885 22341177 -179987170 + L1MB8 LINE L1 5613 5906 -278 8396 162 21 12 chr4 22341190 22342629 -179985718 + Tigger1 DNA MER2_type 14 1466 -952 5925 90 18 8 chr4 22342630 22343464 -179984883 + L1PA11 LINE L1 5333 6174 0 5008 139 43 31 chr4 22343466 22344090 -179984257 + Tigger1 DNA MER2_type 1465 2105 -313 2049 146 0 7 chr4 22344090 22344399 -179983948 + AluSx SINE Alu 1 307 -5 5008 139 43 31 chr4 22344399 22344705 -179983642 + Tigger1 DNA MER2_type 2105 2406 -12 2003 150 31 3 chr4 22344798 22345152 -179983195 - L1PB4 LINE L1 -9 6147 5784 214 291 12 12 chr4 22345157 22345243 -179983104 + (TA)n Simple_repeat Simple_repeat 1 86 0 619 77 121 0 chr4 22345244 22345335 -179983012 - L1PB4 LINE L1 -374 5782 5681 667 232 133 4 chr4 22345341 22345574 -179982773 + L1MB8 LINE L1 5915 6177 -1 214 260 0 0 chr4 22346081 22346131 -179982216 + L2 LINE L2 3264 3313 0 286 291 126 50 chr4 22346204 22346386 -179981961 - L2 LINE L2 -899 2415 2220 318 324 44 28 chr4 22346943 22347125 -179981222 + MIR SINE MIR 21 205 -57 321 45 101 0 chr4 22347126 22347215 -179981132 + (TA)n Simple_repeat Simple_repeat 2 99 0 24 77 0 0 chr4 22347270 22347322 -179981025 + AT_rich Low_complexity Low_complexity 1 52 0 200 83 0 28 chr4 22347393 22347429 -179980918 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 43900 44 1 3 chr4 22347429 22353576 -179974771 - L1PA3 LINE L1 -24 6131 1 1409 200 82 13 chr4 22354461 22354766 -179973581 + MLT1A1 LTR MaLR 40 365 0 514 27 14 14 chr4 22355847 22355920 -179972427 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 216 0 0 0 chr4 22357277 22357301 -179971046 + (A)n Simple_repeat Simple_repeat 1 24 0 208 139 0 0 chr4 22358330 22358366 -179969981 + (A)n Simple_repeat Simple_repeat 1 36 0 579 314 13 31 chr4 22358460 22358689 -179969658 - MIR SINE MIR -20 242 18 520 251 25 43 chr4 22359889 22360052 -179968295 + MER69A DNA AcHobo 1 160 -17 251 114 23 0 chr4 22360172 22360216 -179968131 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 22 35 0 0 chr4 22360773 22360802 -179967545 + AT_rich Low_complexity Low_complexity 1 29 0 451 281 109 31 chr4 22360821 22361013 -179967334 - MIR SINE MIR -25 237 31 343 248 200 0 chr4 22361013 22361118 -179967229 - MER5B DNA MER1_type 0 178 53 25 0 0 0 chr4 22361118 22361143 -179967204 + GC_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 22361258 22361280 -179967067 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 22361691 22361715 -179966632 + GC_rich Low_complexity Low_complexity 1 24 0 2009 226 10 18 chr4 22362576 22363040 -179965307 + MER89 LTR ERV1 1 559 0 5124 200 14 38 chr4 22363854 22365413 -179962934 + L1MC1 LINE L1 4818 6333 0 188 35 35 0 chr4 22365817 22365846 -179962501 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 959 191 6 6 chr4 22366035 22366213 -179962134 + MLT1A2 LTR MaLR 1 178 -196 437 309 76 16 chr4 22367690 22367927 -179960420 + MIR SINE MIR 5 248 -14 1521 130 165 29 chr4 22368149 22368464 -179959883 + THE1C LTR MaLR 1 358 -17 245 62 0 0 chr4 22370151 22370183 -179958164 + MLT1J1 LTR MaLR 407 438 -8 2177 183 5 8 chr4 22370999 22371387 -179956960 + MLT1B LTR MaLR 4 390 0 205 325 89 16 chr4 22371406 22371529 -179956818 - L2 LINE L2 0 3272 3141 1590 177 115 65 chr4 22371600 22371758 -179956589 + MLT1C LTR MaLR 2 151 -316 1651 208 77 61 chr4 22371758 22371801 -179956546 - MLT2B1 LTR ERVL 0 520 479 306 73 0 0 chr4 22371801 22371842 -179956505 + (TG)n Simple_repeat Simple_repeat 2 42 0 1651 208 77 61 chr4 22371842 22372308 -179956039 - MLT2B1 LTR ERVL -41 479 3 1590 177 115 65 chr4 22372308 22372583 -179955764 + MLT1C LTR MaLR 151 457 -10 26 30 0 0 chr4 22373154 22373187 -179955160 + AT_rich Low_complexity Low_complexity 1 33 0 382 378 40 12 chr4 22373716 22373965 -179954382 + MIR SINE MIR 1 256 -6 360 0 0 0 chr4 22375013 22375053 -179953294 + (TA)n Simple_repeat Simple_repeat 1 40 0 207 0 0 0 chr4 22375350 22375373 -179952974 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 282 342 45 0 chr4 22375462 22375573 -179952774 - L3 LINE CR1 -172 1405 1290 7391 169 9 57 chr4 22375573 22377079 -179951268 + L1M1 LINE L1 10 1786 -5779 28 61 0 0 chr4 22377250 22377299 -179951048 + AT_rich Low_complexity Low_complexity 1 49 0 272 291 0 47 chr4 22377389 22377475 -179950872 - L3 LINE CR1 -486 1091 1010 602 346 134 17 chr4 22377478 22378164 -179950183 + L2 LINE L2 2552 3313 0 573 256 68 31 chr4 22378212 22378403 -179949944 + MIR SINE MIR 18 215 -47 464 301 68 41 chr4 22378455 22378674 -179949673 - L3 LINE CR1 -608 969 745 3141 234 114 24 chr4 22379018 22379951 -179948396 - L1MD2 LINE L1 -14 6345 5498 2451 87 0 0 chr4 22379951 22380261 -179948086 - AluY SINE Alu -1 310 1 3141 234 114 24 chr4 22380261 22380913 -179947434 - L1MD2 LINE L1 -861 5498 4600 30857 47 4 3 chr4 22380934 22385571 -179942776 - L1PA5 LINE L1 -5 6149 1506 1769 158 16 26 chr4 22386127 22386431 -179941916 + AluSx SINE Alu 1 301 -11 30 0 0 0 chr4 22386431 22386461 -179941886 + AT_rich Low_complexity Low_complexity 1 30 0 452 320 41 12 chr4 22386826 22386998 -179941349 + MIR SINE MIR 37 213 -49 22 70 0 0 chr4 22387060 22387103 -179941244 + AT_rich Low_complexity Low_complexity 1 43 0 1244 214 50 36 chr4 22387569 22387929 -179940418 - MLT1A1 LTR MaLR 0 365 1 2017 196 35 51 chr4 22388864 22389373 -179938974 + MLT1D LTR MaLR 5 505 0 569 278 100 39 chr4 22389415 22389645 -179938702 + MIR SINE MIR 19 262 0 211 357 24 0 chr4 22390005 22390089 -179938258 + L2 LINE L2 3219 3304 -9 21 0 0 0 chr4 22390950 22390971 -179937376 + AT_rich Low_complexity Low_complexity 1 21 0 432 0 0 0 chr4 22392152 22392200 -179936147 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 209 354 21 21 chr4 22392279 22392375 -179935972 - MIR SINE MIR -154 108 13 226 194 32 0 chr4 22392525 22392587 -179935760 + CT-rich Low_complexity Low_complexity 1 64 0 841 261 101 62 chr4 22392613 22393099 -179935248 + MLT1D LTR MaLR 1 505 0 1348 212 36 39 chr4 22394347 22394710 -179933637 + MLT1A1 LTR MaLR 4 365 0 393 251 86 69 chr4 22394917 22395092 -179933255 - LTR16C LTR ERVL -4 487 310 23 0 0 0 chr4 22395717 22395740 -179932607 + AT_rich Low_complexity Low_complexity 1 23 0 368 261 8 0 chr4 22396149 22396268 -179932079 + CT-rich Low_complexity Low_complexity 1 120 0 2039 120 20 10 chr4 22396268 22396433 -179931914 - AluSx SINE Alu -8 304 142 405 0 0 0 chr4 22396433 22396478 -179931869 + (TG)n Simple_repeat Simple_repeat 2 46 0 1778 145 0 4 chr4 22396478 22396740 -179931607 - AluY SINE Alu -27 284 24 2039 120 20 10 chr4 22396740 22396874 -179931473 - AluSx SINE Alu -169 143 1 289 323 192 28 chr4 22396921 22397379 -179930968 + L2 LINE L2 1804 2336 -978 270 324 0 0 chr4 22397507 22397578 -179930769 + MER81 DNA DNA 2 72 -42 1967 163 73 16 chr4 22398483 22398669 -179929678 - MLT1B LTR MaLR 0 390 216 1823 174 29 27 chr4 22398669 22399043 -179929304 - THE1C LTR MaLR 0 375 1 1967 163 73 16 chr4 22399043 22399225 -179929122 - MLT1B LTR MaLR -174 216 1 325 265 84 14 chr4 22399842 22399987 -179928360 + MIR SINE MIR 68 232 -30 21 0 0 0 chr4 22400710 22400731 -179927616 + AT_rich Low_complexity Low_complexity 1 21 0 2227 80 28 14 chr4 22401181 22401470 -179926877 + AluY SINE Alu 1 293 -18 424 274 9 18 chr4 22401509 22401622 -179926725 - L2 LINE L2 -1 3271 3160 1756 192 38 86 chr4 22401692 22401886 -179926461 - Charlie1b DNA MER1_type -2240 521 319 1271 209 58 66 chr4 22401886 22402263 -179926084 + MLT1A2 LTR MaLR 1 374 0 1756 192 38 86 chr4 22402263 22402615 -179925732 - Charlie1b DNA MER1_type -2442 319 1 254 315 15 39 chr4 22402635 22402765 -179925582 + MIR3 SINE MIR 66 192 -16 670 189 6 88 chr4 22403376 22403875 -179924472 - MER5A DNA MER1_type 0 189 44 2093 107 4 0 chr4 22403424 22403767 -179924580 - AluSg SINE Alu 0 344 1 234 254 85 107 chr4 22403767 22403895 -179924452 + MER5A DNA MER1_type 63 189 0 201 74 0 0 chr4 22404870 22404897 -179923450 + (A)n Simple_repeat Simple_repeat 1 27 0 294 310 46 0 chr4 22404953 22405040 -179923307 - MIR3 SINE MIR -41 167 77 525 297 55 6 chr4 22405261 22405443 -179922904 + L2 LINE L2 2887 3077 -195 433 272 16 0 chr4 22405515 22405640 -179922707 + LTR16C LTR ERVL 358 484 -7 462 286 50 0 chr4 22405807 22405926 -179922421 + L2 LINE L2 3188 3312 -1 274 268 22 87 chr4 22406772 22406910 -179921437 + L2 LINE L2 3185 3313 0 271 314 10 10 chr4 22407130 22407232 -179921115 + MIR SINE MIR 91 192 -70 2265 135 26 0 chr4 22407237 22407585 -179920762 + THE1B LTR MaLR 1 357 -7 297 273 7 101 chr4 22407637 22407776 -179920571 - MIR SINE MIR -60 148 23 449 291 108 19 chr4 22408424 22408582 -179919765 - MER5B DNA MER1_type -6 172 1 192 377 132 18 chr4 22408586 22408700 -179919647 + L2 LINE L2 2918 3044 -228 273 191 79 0 chr4 22409022 22409085 -179919262 + L1ME3A LINE L1 5594 5661 -501 319 300 0 0 chr4 22409088 22409178 -179919169 - Tigger5 DNA MER2_type -1 2322 2233 257 230 14 27 chr4 22409227 22409301 -179919046 - Tigger5 DNA MER2_type 0 2323 2251 237 209 0 0 chr4 22409279 22409322 -179919025 - Tigger5 DNA MER2_type -2277 46 4 * 1328 265 62 16 chr4 22409327 22409630 -179918717 + L1ME3A LINE L1 5660 5995 -175 1947 84 0 4 chr4 22409630 22409891 -179918456 + AluY SINE Alu 50 309 -2 1328 265 62 16 chr4 22409891 22410073 -179918274 + L1ME3A LINE L1 5995 6167 -3 26 30 0 0 chr4 22410334 22410367 -179917980 + AT_rich Low_complexity Low_complexity 1 33 0 304 260 30 0 chr4 22410717 22410817 -179917530 - MER94 DNA DNA -30 104 2 1832 123 40 53 chr4 22410980 22411282 -179917065 + AluSx SINE Alu 1 298 -14 2174 177 30 19 chr4 22412370 22412799 -179915548 + Tigger2a DNA MER2_type 1 434 0 493 325 37 0 chr4 22413999 22414187 -179914160 + MIR SINE MIR 28 222 -40 1970 124 8 0 chr4 22416125 22416392 -179911955 - AluSx SINE Alu -10 302 34 1991 203 49 14 chr4 22416824 22417312 -179911035 + MLT1D LTR MaLR 1 505 0 901 309 89 8 chr4 22417702 22418097 -179910250 + LTR16A LTR ERVL 24 450 0 677 309 19 9 chr4 22418404 22418638 -179909709 + MIR SINE MIR 17 252 -10 972 196 19 5 chr4 22419238 22419452 -179908895 - Tigger1 DNA MER2_type 0 2418 2202 817 156 0 7 chr4 22419441 22419576 -179908771 - Tigger1 DNA MER2_type -2261 157 24 * 2329 73 0 13 chr4 22420135 22420436 -179907911 + AluSg SINE Alu 13 309 -1 249 293 40 10 chr4 22421343 22421442 -179906905 + MLT2C1 LTR ERVL 44 145 -252 * 1918 218 72 29 chr4 22421384 22421908 -179906439 + MLT1E2 LTR MaLR 80 626 0 910 203 75 55 chr4 22421917 22421959 -179906388 + LTR37A LTR ERV1 19 59 -367 2253 96 0 23 chr4 22421959 22422261 -179906086 - AluSg1 SINE Alu -14 295 1 910 203 75 55 chr4 22422261 22422618 -179905729 + LTR37A LTR ERV1 59 426 0 404 250 74 7 chr4 22423170 22423318 -179905029 - MER69 DNA AcHobo 0 2526 2369 274 310 113 21 chr4 22423608 22423750 -179904597 - MER5A DNA MER1_type -34 155 1 2477 53 3 0 chr4 22424370 22424669 -179903678 + AluY SINE Alu 1 300 -11 296 216 21 31 chr4 22425163 22425260 -179903087 + (TATATG)n Simple_repeat Simple_repeat 3 98 0 594 258 143 38 chr4 22425285 22425703 -179902644 + LTR33 LTR ERVL 52 513 -8 2413 112 0 0 chr4 22425910 22426222 -179902125 + AluSq SINE Alu 1 312 -1 37 0 0 0 chr4 22426791 22426828 -179901519 + AT_rich Low_complexity Low_complexity 1 37 0 253 333 56 61 chr4 22427630 22427810 -179900537 - L2 LINE L2 -227 3045 2867 832 275 28 73 chr4 22429556 22429597 -179898750 + L2 LINE L2 1430 1471 -1843 1169 210 59 65 chr4 22429597 22429969 -179898378 - MLT1A2 LTR MaLR -3 371 2 832 275 28 73 chr4 22429969 22430224 -179898123 + L2 LINE L2 1471 1704 -1610 2234 125 0 0 chr4 22430224 22430528 -179897819 + AluSx SINE Alu 1 304 -8 832 275 28 73 chr4 22430528 22430652 -179897695 + L2 LINE L2 1704 1832 -1482 1053 264 87 53 chr4 22430778 22430899 -179897448 - L1MC4a LINE L1 -1861 5947 5832 1844 128 55 43 chr4 22430899 22431228 -179897119 + MER1B DNA MER1_type 4 336 -1 1053 264 87 53 chr4 22431228 22431694 -179896653 - L1MC4a LINE L1 -1976 5832 5340 180 77 0 0 chr4 22431694 22431720 -179896627 + (TC)n Simple_repeat Simple_repeat 2 27 0 474 120 0 0 chr4 22431721 22431796 -179896551 + (TA)n Simple_repeat Simple_repeat 1 75 0 308 342 26 8 chr4 22432335 22432452 -179895895 + L2 LINE L2 1823 1941 -1373 615 183 0 0 chr4 22432458 22432589 -179895758 + L1MA4 LINE L1 6169 6299 -1 423 228 24 114 chr4 22432968 22433135 -179895212 + MLT1J LTR MaLR 162 313 -198 402 285 55 10 chr4 22433162 22433362 -179894985 - MER58C DNA MER1_type 0 215 7 545 239 67 17 chr4 22433369 22433549 -179894798 + MLT1J LTR MaLR 321 509 -2 295 327 26 20 chr4 22434661 22434814 -179893533 + MLT1J2 LTR MaLR 253 406 -44 284 313 160 15 chr4 22434847 22434978 -179893369 - MIR SINE MIR -100 162 13 225 337 142 30 chr4 22435255 22435424 -179892923 + MIR SINE MIR 1 188 -74 293 248 38 57 chr4 22435473 22435578 -179892769 - L2 LINE L2 -1 3312 3210 590 273 6 16 chr4 22435649 22435832 -179892515 + L1ME2 LINE L1 37 217 -6179 2899 268 62 15 chr4 22435836 22437201 -179891146 + L1ME2 LINE L1 2958 4387 -1828 24 32 0 0 chr4 22437209 22437240 -179891107 + AT_rich Low_complexity Low_complexity 1 31 0 947 232 62 36 chr4 22437242 22437630 -179890717 + L1ME2 LINE L1 4590 4987 -1228 41272 28 21 1 chr4 22437644 22443675 -179884672 + L1HS LINE L1 1 6155 0 234 0 0 0 chr4 22443703 22443729 -179884618 + (A)n Simple_repeat Simple_repeat 1 26 0 2122 232 80 36 chr4 22443731 22444022 -179884325 + L1ME2 LINE L1 4978 5255 -978 1336 204 18 87 chr4 22444022 22444414 -179883933 + MLT1A1 LTR MaLR 1 365 0 2122 232 80 36 chr4 22444414 22444910 -179883437 + L1ME2 LINE L1 5255 5728 -505 2432 93 0 0 chr4 22444910 22445221 -179883126 + AluSx SINE Alu 1 311 -1 2122 232 80 36 chr4 22445221 22445622 -179882725 + L1ME2 LINE L1 5728 6232 -1 31 0 0 0 chr4 22445925 22445956 -179882391 + AT_rich Low_complexity Low_complexity 1 31 0 1576 169 30 10 chr4 22447411 22447707 -179880640 - AluJo SINE Alu -8 304 3 405 0 0 0 chr4 22447915 22447960 -179880387 + (TG)n Simple_repeat Simple_repeat 2 46 0 378 289 152 19 chr4 22449872 22450083 -179878264 + MIR SINE MIR 18 256 -6 374 332 70 54 chr4 22450230 22450278 -179878069 - MIR SINE MIR -6 256 210 2110 109 0 14 chr4 22450278 22450586 -179877761 - AluSx SINE Alu 0 304 1 374 332 70 54 chr4 22450586 22450777 -179877570 - MIR SINE MIR -52 210 12 262 299 72 31 chr4 22450779 22450876 -179877471 + L2 LINE L2 3175 3275 -38 319 289 84 7 chr4 22451061 22451203 -179877144 - LTR67 LTR ERVL -4 553 401 418 309 24 58 chr4 22451343 22451550 -179876797 - LTR67 LTR ERVL -356 201 2 249 269 87 39 chr4 22451557 22451661 -179876686 - MIR SINE MIR -119 143 35 486 283 57 28 chr4 22451794 22451971 -179876376 - MIR3 SINE MIR -6 202 21 422 313 41 7 chr4 22452537 22452684 -179875663 + MIR SINE MIR 3 154 -108 2201 104 16 23 chr4 22452872 22453180 -179875167 + AluSx SINE Alu 1 306 -6 1093 208 128 17 chr4 22453291 22453579 -179874768 + MER67D LTR ERV1 1 320 -194 317 198 42 104 chr4 22453581 22453677 -179874670 - Tigger7 DNA MER2_type 0 2487 2398 2370 170 114 0 chr4 22453679 22454144 -179874203 - Tigger7 DNA MER2_type -1966 521 4 595 224 55 16 chr4 22454151 22454334 -179874013 + MER67D LTR ERV1 325 514 0 227 233 0 0 chr4 22454497 22454540 -179873807 + MIR3 SINE MIR 118 160 -48 23 0 0 0 chr4 22454643 22454666 -179873681 + AT_rich Low_complexity Low_complexity 1 23 0 1815 149 10 19 chr4 22454767 22455075 -179873272 - AluSq SINE Alu -8 305 1 182 341 89 32 chr4 22455365 22455488 -179872859 - L2 LINE L2 -2 3311 3182 1657 154 57 11 chr4 22455799 22455925 -179872422 + AluSx SINE Alu 1 120 -192 220 0 86 0 chr4 22455925 22455960 -179872387 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1657 154 57 11 chr4 22455960 22456112 -179872235 + AluSx SINE Alu 120 292 -20 180 0 0 0 chr4 22456113 22456133 -179872214 + (TA)n Simple_repeat Simple_repeat 1 20 0 1728 170 20 3 chr4 22457070 22457370 -179870977 - AluJb SINE Alu -6 306 2 242 290 57 0 chr4 22457632 22457756 -179870591 + L1ME LINE L1 5651 5781 -340 370 213 7 26 chr4 22458910 22459065 -179869282 + (TA)n Simple_repeat Simple_repeat 1 152 0 205 292 11 101 chr4 22459358 22459447 -179868900 - L2 LINE L2 -182 3090 3010 234 105 0 0 chr4 22459751 22459789 -179868558 + (TCCA)n Simple_repeat Simple_repeat 1 38 0 329 75 19 0 chr4 22460674 22460727 -179867620 + (TTTCC)n Simple_repeat Simple_repeat 4 57 0 1216 148 0 37 chr4 22460733 22460949 -179867398 - L1PB4 LINE L1 -13 6143 5936 2850 165 57 39 chr4 22460998 22461714 -179866633 - L1MA8 LINE L1 -4 6287 5559 568 134 10 0 chr4 22461718 22461815 -179866532 - AluSg/x SINE Alu -2 310 213 785 134 22 8 chr4 22461815 22461949 -179866398 - L1MA8 LINE L1 -743 5569 5434 596 304 51 82 chr4 22461949 22462304 -179866043 + L2 LINE L2 2852 3190 -123 998 208 47 24 chr4 22462304 22462559 -179865788 + MIR SINE MIR 2 262 0 596 304 51 82 chr4 22462559 22462677 -179865670 + L2 LINE L2 3190 3310 -3 614 233 0 6 chr4 22463603 22463779 -179864568 + CT-rich Low_complexity Low_complexity 3 177 0 213 220 0 20 chr4 22463824 22463874 -179864473 + MIR SINE MIR 116 164 -98 1649 174 34 17 chr4 22464900 22465194 -179863153 - AluJb SINE Alu -13 299 1 425 294 42 17 chr4 22466109 22466228 -179862119 + MIR SINE MIR 23 144 -118 21 0 0 0 chr4 22466718 22466739 -179861608 + AT_rich Low_complexity Low_complexity 1 21 0 363 330 40 28 chr4 22466998 22467174 -179861173 + L2 LINE L2 3122 3299 -14 453 331 50 25 chr4 22467191 22467433 -179860914 + MIR SINE MIR 14 261 -1 228 297 0 16 chr4 22468784 22468848 -179859499 - L2 LINE L2 -26 3246 3184 22 56 0 0 chr4 22470992 22471028 -179857319 + AT_rich Low_complexity Low_complexity 1 36 0 1464 146 13 86 chr4 22471043 22471170 -179857177 + AluJo SINE Alu 16 151 -161 351 0 0 0 chr4 22471170 22471209 -179857138 + (CTA)n Simple_repeat Simple_repeat 1 39 0 1464 146 13 86 chr4 22471209 22471383 -179856964 + AluJo SINE Alu 151 295 -17 2553 43 7 0 chr4 22471826 22472125 -179856222 - AluY SINE Alu -10 301 1 221 200 36 0 chr4 22472652 22472707 -179855640 + (TGAA)n Simple_repeat Simple_repeat 4 60 0 781 331 64 10 chr4 22472839 22473153 -179855194 + MLT1J1 LTR MaLR 96 426 -20 25 31 0 0 chr4 22473918 22473950 -179854397 + AT_rich Low_complexity Low_complexity 1 32 0 644 294 13 0 chr4 22474797 22474950 -179853397 + MER45A DNA AcHobo 1 155 -23 1500 225 115 27 chr4 22475058 22475579 -179852768 - L1ME3 LINE L1 -7 6155 5589 251 272 9 88 chr4 22476689 22476803 -179851544 - MIR SINE MIR -17 245 141 3203 52 13 0 chr4 22477325 22477963 -179850384 - L1PA5 LINE L1 -497 5657 5015 3335 82 3 133 chr4 22477963 22478527 -179849820 + L1PA5 LINE L1 5659 6149 -5 518 115 184 0 chr4 22478527 22478614 -179849733 + L1P5 LINE L1 5680 5782 -372 233 125 0 0 chr4 22478612 22478652 -179849695 + L1MC4 LINE L1 6664 6703 -1339 * 322 229 72 0 chr4 22478655 22478738 -179849609 + L1MC4 LINE L1 6615 6703 -1339 304 276 0 61 chr4 22478660 22478758 -179849589 - L1MC4 LINE L1 -1339 6703 6612 * 2341 113 14 8 chr4 22478759 22479129 -179849218 + L1PB3 LINE L1 5783 6154 0 25 0 0 0 chr4 22479129 22479154 -179849193 + AT_rich Low_complexity Low_complexity 1 25 0 383 247 2 6 chr4 22479256 22479360 -179848987 - MIR SINE MIR -41 167 65 2277 102 0 7 chr4 22479825 22480128 -179848219 - AluY SINE Alu -10 301 1 233 319 65 68 chr4 22480185 22480317 -179848030 - MIR SINE MIR -3 259 127 3563 150 64 0 chr4 22480317 22480929 -179847418 + L1PA16 LINE L1 5512 6162 -4 233 319 65 68 chr4 22480929 22481044 -179847303 - MIR SINE MIR -135 127 13 1046 343 47 15 chr4 22481234 22481639 -179846708 - MER115 DNA AcHobo -238 455 38 322 327 44 0 chr4 22482571 22482684 -179845663 + MIR SINE MIR 30 147 -61 242 158 0 0 chr4 22483120 22483158 -179845189 - L2 LINE L2 0 3272 3235 338 354 35 7 chr4 22483755 22483899 -179844448 - MIR SINE MIR -44 218 71 819 223 25 30 chr4 22483949 22484151 -179844196 - MIR SINE MIR -52 210 10 427 314 25 16 chr4 22484876 22484997 -179843350 + MIR3 SINE MIR 12 133 -75 605 285 15 35 chr4 22485040 22485240 -179843107 - MIR SINE MIR -64 198 3 257 278 78 0 chr4 22485678 22485793 -179842554 + L1ME4a LINE L1 5982 6105 -16 1843 174 3 0 chr4 22486161 22486472 -179841875 - AluJb SINE Alu 0 312 1 1991 129 23 54 chr4 22487047 22487434 -179840913 - THE1C LTR MaLR 0 375 1 2563 96 67 7 chr4 22487457 22487875 -179840472 - L1MA5A LINE L1 -4 6293 5851 377 39 0 19 chr4 22487928 22487980 -179840367 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 256 311 15 61 chr4 22487988 22488120 -179840227 + L2 LINE L2 3180 3305 -8 22 70 0 0 chr4 22489257 22489300 -179839047 + AT_rich Low_complexity Low_complexity 1 43 0 1851 146 42 39 chr4 22489628 22489963 -179838384 + MER1B DNA MER1_type 2 337 0 562 295 112 9 chr4 22490012 22490236 -179838111 - MIR SINE MIR -14 248 2 201 227 80 45 chr4 22490608 22490696 -179837651 - MIR SINE MIR -75 187 97 1677 184 45 14 chr4 22490847 22491201 -179837146 - MLT1A1 LTR MaLR 0 365 1 704 229 32 0 chr4 22491213 22491370 -179836977 + MER106B DNA MER1_type 896 1057 -2 213 65 0 0 chr4 22491588 22491619 -179836728 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2218 111 0 0 chr4 22491643 22491932 -179836415 - AluSx SINE Alu -23 289 1 430 203 0 0 chr4 22491956 22492035 -179836312 - AluJ/FLAM SINE Alu -233 79 1 436 327 103 14 chr4 22492285 22492499 -179835848 + MIR SINE MIR 23 255 -7 1494 156 101 0 chr4 22494142 22494421 -179833926 - AluJo SINE Alu 0 305 1 432 370 22 6 chr4 22494804 22494985 -179833362 - MIR SINE MIR -29 233 50 583 294 71 5 chr4 22495325 22495522 -179832825 - MIR SINE MIR 0 262 53 206 286 0 0 chr4 22495544 22495600 -179832747 + MIR SINE MIR 192 247 -15 2205 101 3 0 chr4 22496318 22496645 -179831702 - AluSq SINE Alu 0 328 1 226 320 10 48 chr4 22496755 22496858 -179831489 + L2 LINE L2 3174 3272 0 34 72 0 0 chr4 22497309 22497378 -179830969 + AT_rich Low_complexity Low_complexity 1 69 0 309 315 51 115 chr4 22498625 22498719 -179829628 + MLT1K LTR MaLR 197 295 -293 1350 55 0 0 chr4 22498719 22498913 -179829434 + L1PA5 LINE L1 5972 6165 0 309 315 51 115 chr4 22498913 22499227 -179829120 + MLT1K LTR MaLR 295 580 -8 253 282 50 138 chr4 22499424 22499605 -179828742 + L2 LINE L2 3077 3241 -31 2296 129 8 19 chr4 22499637 22500016 -179828331 - THE1C LTR MaLR 0 375 1 214 279 0 16 chr4 22501248 22501309 -179827038 + MIR SINE MIR 2 61 -201 2161 204 56 31 chr4 22501317 22501802 -179826545 + MLT1D LTR MaLR 7 503 -2 533 296 57 0 chr4 22501829 22501988 -179826359 + MIR SINE MIR 95 262 0 183 42 0 0 chr4 22502110 22502134 -179826213 + (TG)n Simple_repeat Simple_repeat 2 25 0 1367 217 43 45 chr4 22502480 22502854 -179825493 - MLT1A2 LTR MaLR -1 373 1 1759 188 3 0 chr4 22502909 22503217 -179825130 - AluSq SINE Alu -4 309 1 1286 201 0 0 chr4 22503268 22503507 -179824840 + Tigger5 DNA MER2_type 2085 2323 0 2562 228 74 10 chr4 22503659 22504328 -179824019 - L1MD2 LINE L1 -361 5998 5284 1573 228 0 0 chr4 22504328 22504639 -179823708 - AluY SINE Alu 0 311 1 2562 228 74 10 chr4 22504639 22504713 -179823634 - L1MD2 LINE L1 -1075 5284 5216 1829 113 0 0 chr4 22504813 22505052 -179823295 - AluSx SINE Alu -73 239 1 1478 167 0 0 chr4 22505103 22505342 -179823005 + Tigger5 DNA MER2_type 2085 2323 0 333 246 0 0 chr4 22505665 22505734 -179822613 - MER94 DNA DNA -61 73 5 244 310 60 0 chr4 22506040 22506140 -179822207 - L3 LINE CR1 -2 1575 1470 297 352 16 0 chr4 22506153 22506278 -179822069 - MIR SINE MIR -16 246 120 327 219 0 0 chr4 22506329 22506402 -179821945 + FLAM_C SINE Alu 35 107 -26 419 168 13 47 chr4 22506402 22506551 -179821796 + GA-rich Low_complexity Low_complexity 1 144 0 323 295 47 31 chr4 22507005 22507134 -179821213 + MIR3 SINE MIR 75 205 -3 216 0 0 0 chr4 22507836 22507860 -179820487 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 274 292 44 44 chr4 22507902 22508015 -179820332 - L2 LINE L2 -18 3295 3183 416 241 26 25 chr4 22508065 22508277 -179820070 - MER5C DNA MER1_type 0 324 34 2103 136 128 8 chr4 22508278 22508660 -179819687 + MSTA LTR MaLR 1 428 0 1370 209 53 76 chr4 22510111 22510508 -179817839 + MLT1C LTR MaLR 6 392 -75 4443 78 15 29 chr4 22510508 22511166 -179817181 - L1PA10 LINE L1 -3 6165 5517 1370 209 53 76 chr4 22511166 22511241 -179817106 + MLT1C LTR MaLR 392 467 0 201 290 16 16 chr4 22512721 22512783 -179815564 - L2 LINE L2 -4 3309 3248 236 336 41 16 chr4 22513099 22513221 -179815126 - L2 LINE L2 -252 3061 2937 355 298 8 8 chr4 22513330 22513451 -179814896 - L2 LINE L2 -1357 1957 1837 186 44 44 44 chr4 22513961 22514006 -179814341 + (TATAA)n Simple_repeat Simple_repeat 5 49 0 315 112 112 0 chr4 22514070 22514231 -179814116 + (TA)n Simple_repeat Simple_repeat 2 180 0 453 92 113 0 chr4 22514251 22514538 -179813809 + (TA)n Simple_repeat Simple_repeat 1 319 0 335 99 106 12 chr4 22514556 22514717 -179813630 + (TA)n Simple_repeat Simple_repeat 2 177 0 251 117 97 0 chr4 22514728 22514831 -179813516 + (TA)n Simple_repeat Simple_repeat 1 113 0 1911 139 0 0 chr4 22514847 22515113 -179813234 - AluSx SINE Alu -46 266 1 351 173 0 0 chr4 22515117 22515198 -179813149 - Charlie4 DNA MER1_type -79 1882 1802 756 200 28 17 chr4 22515291 22515471 -179812876 - Charlie4 DNA MER1_type -1779 182 1 1079 291 96 20 chr4 22515488 22515948 -179812399 + L2 LINE L2 2810 3304 -9 879 149 0 8 chr4 22516179 22516313 -179812034 + AluJb SINE Alu 2 134 -178 1928 99 44 41 chr4 22516893 22517187 -179811160 + AluSg1 SINE Alu 1 295 -14 454 301 48 15 chr4 22517341 22517547 -179810800 - L2 LINE L2 0 3313 3101 17783 28 2 1 chr4 22517657 22520551 -179807796 + L1PA4 LINE L1 3251 6152 -3 397 294 15 77 chr4 22521007 22521344 -179807003 + L1ME4a LINE L1 5598 5913 -208 2464 68 3 3 chr4 22522048 22522355 -179805992 + AluY SINE Alu 1 307 -4 338 315 18 48 chr4 22522519 22522590 -179805757 + MIR SINE MIR 87 159 -103 1908 212 85 8 chr4 22522590 22523034 -179805313 + MLT2B1 LTR ERVL 3 488 -32 387 41 0 0 chr4 22523034 22523083 -179805264 + (TG)n Simple_repeat Simple_repeat 2 50 0 1908 212 85 8 chr4 22523083 22523119 -179805228 + MLT2B1 LTR ERVL 488 520 0 338 315 18 48 chr4 22523119 22523212 -179805135 + MIR SINE MIR 159 246 -16 180 351 26 0 chr4 22523680 22523757 -179804590 - L3 LINE CR1 -2 1575 1497 530 156 37 44 chr4 22524289 22524424 -179803923 - L1MA5 LINE L1 -1 6299 6166 25 51 0 0 chr4 22525050 22525089 -179803258 + AT_rich Low_complexity Low_complexity 1 39 0 289 363 76 6 chr4 22525213 22525384 -179802963 + MIR SINE MIR 21 203 -59 189 244 110 37 chr4 22526807 22526889 -179801458 - MIR3 SINE MIR -21 187 100 324 292 124 9 chr4 22527287 22527400 -179800947 - MIR3 SINE MIR -15 193 68 616 153 0 12 chr4 22527708 22527871 -179800476 + (TA)n Simple_repeat Simple_repeat 2 162 0 225 0 0 0 chr4 22527901 22527926 -179800421 + (TA)n Simple_repeat Simple_repeat 1 25 0 189 0 0 0 chr4 22527966 22527987 -179800360 + (TA)n Simple_repeat Simple_repeat 1 21 0 303 305 0 11 chr4 22528011 22528106 -179800241 - L1MC4 LINE L1 -1335 6707 6614 300 230 0 14 chr4 22528077 22528151 -179800196 - L1MCa LINE L1 -4358 2068 1996 * 425 263 101 43 chr4 22528883 22529092 -179799255 - MIR SINE MIR -21 241 21 204 97 0 0 chr4 22529379 22529410 -179798937 + (CATA)n Simple_repeat Simple_repeat 2 32 0 234 314 29 0 chr4 22529699 22529769 -179798578 + MIR SINE MIR 172 243 -19 261 180 34 0 chr4 22531033 22531122 -179797225 + (TA)n Simple_repeat Simple_repeat 2 93 0 329 335 13 13 chr4 22531168 22531320 -179797027 + L1MC/D LINE L1 5665 5816 -1992 3182 32 3 0 chr4 22531806 22532185 -179796162 + L1PA3 LINE L1 5771 6150 -5 2310 82 0 13 chr4 22532290 22532595 -179795752 - AluSc SINE Alu -8 301 1 362 269 8 34 chr4 22533066 22533185 -179795162 + MIR SINE MIR 102 217 -45 187 297 0 0 chr4 22533808 22533845 -179794502 + MER5B DNA MER1_type 5 41 -137 1674 214 36 17 chr4 22533915 22534329 -179794018 + L1MB5 LINE L1 5688 6109 -65 369 259 14 72 chr4 22534547 22534686 -179793661 + MER5A DNA MER1_type 37 167 -22 249 310 128 37 chr4 22534780 22534967 -179793380 - MIR SINE MIR -12 250 47 208 348 17 17 chr4 22535741 22535856 -179792491 + MIR SINE MIR 73 187 -75 264 383 113 0 chr4 22535884 22536025 -179792322 - L2 LINE L2 -6 3266 3110 730 335 80 17 chr4 22536039 22536451 -179791896 - L2 LINE L2 0 3313 2876 1312 167 20 82 chr4 22536472 22536778 -179791569 + AluJo SINE Alu 12 298 -14 610 310 59 31 chr4 22536778 22537065 -179791282 - L2 LINE L2 -481 2833 2539 430 287 28 35 chr4 22537107 22537250 -179791097 + L2 LINE L2 3172 3313 0 475 320 114 0 chr4 22537279 22537454 -179790893 - L2 LINE L2 -856 2458 2264 647 264 10 70 chr4 22537517 22537632 -179790715 + MER5A DNA MER1_type 1 100 -89 2247 118 0 6 chr4 22537632 22537945 -179790402 + AluSx SINE Alu 2 312 0 647 264 10 70 chr4 22537945 22538030 -179790317 + MER5A DNA MER1_type 100 189 0 226 338 42 0 chr4 22538434 22538505 -179789842 + L2 LINE L2 3240 3313 0 523 310 91 13 chr4 22539098 22539330 -179789017 - MIR SINE MIR 0 262 13 262 397 63 0 chr4 22539758 22539884 -179788463 - L2 LINE L2 -17 3255 3122 324 0 0 0 chr4 22540051 22540087 -179788260 + (TG)n Simple_repeat Simple_repeat 1 36 0 454 331 0 7 chr4 22540798 22540952 -179787395 - MER117 DNA MER1_type -42 155 3 267 375 29 0 chr4 22540961 22541065 -179787282 - MIR3 SINE MIR -54 154 48 782 386 41 16 chr4 22541763 22542413 -179785934 + L2 LINE L2 2394 3051 -221 692 322 47 41 chr4 22542423 22542889 -179785458 + LTR16C LTR ERVL 3 471 -20 480 291 44 34 chr4 22542944 22543150 -179785197 + L2 LINE L2 3106 3313 0 582 297 53 23 chr4 22543356 22543589 -179784758 - MIR SINE MIR -18 244 5 1272 184 73 35 chr4 22543832 22544120 -179784227 - AluJo SINE Alu -13 299 1 216 0 0 0 chr4 22544134 22544158 -179784189 + (TG)n Simple_repeat Simple_repeat 2 25 0 194 313 50 38 chr4 22544189 22544269 -179784078 - MIR SINE MIR -173 89 9 518 207 96 106 chr4 22544638 22544846 -179783501 + MIR SINE MIR 43 248 -14 1914 148 0 3 chr4 22544981 22545303 -179783044 + AluSx SINE Alu 1 321 0 207 344 75 47 chr4 22545430 22545642 -179782705 - L2 LINE L2 -429 2885 2668 503 275 109 44 chr4 22546114 22546343 -179782004 - MIR SINE MIR -13 249 6 192 284 49 74 chr4 22546644 22546725 -179781622 + MIR SINE MIR 5 83 -179 224 379 29 44 chr4 22546744 22546950 -179781397 - L2 LINE L2 -252 3020 2818 344 269 84 8 chr4 22547112 22547231 -179781116 + MIR SINE MIR 87 214 -48 5872 29 0 0 chr4 22547537 22548232 -179780115 - L1P LINE L1 -2017 4129 3435 282 392 15 38 chr4 22548962 22549225 -179779122 - L2 LINE L2 -198 3074 2818 1783 158 37 10 chr4 22549560 22549857 -179778490 - AluJb SINE Alu -4 308 4 1943 154 3 0 chr4 22550872 22551170 -179777177 + AluSx SINE Alu 3 301 -11 748 276 86 0 chr4 22552256 22552488 -179775859 + MIR SINE MIR 11 262 0 541 277 14 7 chr4 22552521 22552662 -179775685 - MIR SINE MIR 0 262 121 188 305 34 51 chr4 22553524 22553642 -179774705 + L2 LINE L2 2350 2465 -849 253 336 90 52 chr4 22554043 22554177 -179774170 + L2 LINE L2 3134 3272 0 326 314 50 14 chr4 22555306 22555446 -179772901 - MIR3 SINE MIR -40 168 24 229 291 126 39 chr4 22555727 22555854 -179772493 - MIR SINE MIR -77 185 48 1398 133 31 9 chr4 22556017 22556242 -179772105 + MER30 DNA MER1_type 1 230 0 816 121 0 0 chr4 22556400 22556516 -179771831 + MLT1C LTR MaLR 346 461 -6 872 127 0 22 chr4 22556534 22556668 -179771679 - AluSq/x SINE Alu -179 133 3 439 261 50 50 chr4 22556795 22556975 -179771372 + MLT1J LTR MaLR 1 180 -331 1135 260 130 84 chr4 22557318 22558366 -179769981 + HAL1 LINE L1 679 1823 -684 2371 114 35 0 chr4 22558366 22558733 -179769614 - L1PA13 LINE L1 -2 6161 5782 1135 260 130 84 chr4 22558733 22559243 -179769104 + HAL1 LINE L1 1823 2308 -199 419 113 38 38 chr4 22559281 22559361 -179768986 + MADE1 DNA Mariner 1 80 0 316 197 0 53 chr4 22559626 22559702 -179768645 - L1MC4 LINE L1 -1317 6725 6654 35 0 0 0 chr4 22559743 22559778 -179768569 + AT_rich Low_complexity Low_complexity 1 35 0 251 261 148 11 chr4 22559780 22559868 -179768479 - L2 LINE L2 0 3313 3214 254 206 88 69 chr4 22559910 22560012 -179768335 + MIR SINE MIR 89 192 -70 342 309 148 9 chr4 22560599 22560809 -179767538 + L2 LINE L2 2561 2799 -515 2204 127 0 3 chr4 22561245 22561553 -179766794 - AluSx SINE Alu -5 307 1 453 235 196 36 chr4 22562309 22562615 -179765732 + MER113 DNA MER1_type? 3 357 -164 354 23 0 0 chr4 22562618 22562661 -179765686 + (TG)n Simple_repeat Simple_repeat 2 44 0 1309 244 71 25 chr4 22563072 22563511 -179764836 + L1MB7 LINE L1 5715 6173 -11 1249 45 0 0 chr4 22563815 22563990 -179764357 + L1PA4 LINE L1 5992 6166 0 2557 62 0 0 chr4 22564097 22564401 -179763946 + AluY SINE Alu 1 304 -7 483 291 128 45 chr4 22564626 22564900 -179763447 - LTR16A1 LTR ERVL 0 457 134 348 24 0 0 chr4 22564900 22564941 -179763406 + (TG)n Simple_repeat Simple_repeat 2 42 0 483 291 128 45 chr4 22564941 22565088 -179763259 - LTR16A1 LTR ERVL -323 134 1 211 354 13 13 chr4 22565095 22565174 -179763173 - MIR SINE MIR -166 96 18 26 0 0 0 chr4 22565261 22565287 -179763060 + AT_rich Low_complexity Low_complexity 1 26 0 1898 148 0 39 chr4 22565712 22566023 -179762324 + AluSx SINE Alu 1 299 -13 333 307 31 0 chr4 22567118 22567245 -179761102 + MER103 DNA DNA 33 163 -3 470 299 20 7 chr4 22567633 22567780 -179760567 - MIR SINE MIR -36 226 78 801 310 37 0 chr4 22568648 22568890 -179759457 - MIR SINE MIR 0 262 12 886 157 54 6 chr4 22568935 22569101 -179759246 - L1PA15 LINE L1 -198 5967 5794 1416 169 33 0 chr4 22569323 22569596 -179758751 - L1MA3 LINE L1 0 6305 6024 426 282 88 28 chr4 22571054 22571235 -179757112 - MIR SINE MIR -36 226 35 2218 69 3 21 chr4 22571733 22572116 -179756231 + AluY SINE Alu 1 378 0 519 337 78 24 chr4 22572685 22573017 -179755330 + L2 LINE L2 1203 1552 -1762 251 267 107 0 chr4 22573022 22573097 -179755250 + L2 LINE L2 3214 3296 -17 258 32 0 0 chr4 22573103 22573134 -179755213 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 365 329 28 35 chr4 22573417 22573560 -179754787 - MIR3 SINE MIR -65 143 2 419 244 10 129 chr4 22573858 22574059 -179754288 - MER69A DNA AcHobo 0 177 1 357 355 60 32 chr4 22574089 22574337 -179754010 + MIR SINE MIR 8 262 0 437 296 52 5 chr4 22574845 22574980 -179753367 + MIR3 SINE MIR 68 189 -19 645 293 107 34 chr4 22575573 22576075 -179752272 + L2 LINE L2 2738 3288 -25 288 0 0 0 chr4 22576084 22576116 -179752231 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 358 295 21 0 chr4 22576193 22576288 -179752059 + L2 LINE L2 3210 3306 -7 587 322 17 30 chr4 22576631 22576867 -179751480 - MIR SINE MIR -25 237 5 210 171 0 0 chr4 22577128 22577169 -179751178 + (TATG)n Simple_repeat Simple_repeat 2 42 0 195 100 0 0 chr4 22577191 22577221 -179751126 + (TG)n Simple_repeat Simple_repeat 2 31 0 210 71 0 0 chr4 22577261 22577289 -179751058 + (TA)n Simple_repeat Simple_repeat 2 29 0 283 260 110 0 chr4 22577728 22577801 -179750546 + MIR SINE MIR 64 144 -64 303 275 22 11 chr4 22578159 22578250 -179750097 + MIR SINE MIR 57 148 -114 493 299 38 13 chr4 22579131 22579288 -179749059 + MIR SINE MIR 35 195 -67 31 44 0 0 chr4 22579364 22579409 -179748938 + AT_rich Low_complexity Low_complexity 1 45 0 185 361 16 0 chr4 22579431 22579492 -179748855 - MIR SINE MIR -154 108 47 349 319 98 18 chr4 22581019 22581182 -179747165 - MIR3 SINE MIR -11 197 22 806 76 8 0 chr4 22584196 22584315 -179744032 + (GA)n Simple_repeat Simple_repeat 1 120 0 654 229 129 0 chr4 22585417 22585587 -179742760 + MIR SINE MIR 2 193 -69 320 324 190 0 chr4 22586217 22586396 -179741951 - MIR SINE MIR 0 262 50 862 204 0 0 chr4 22586560 22586707 -179741640 - AluJb SINE Alu -30 282 136 2190 107 3 7 chr4 22586987 22587286 -179741061 - AluSp SINE Alu -14 299 2 763 270 98 65 chr4 22587442 22587809 -179740538 + L2 LINE L2 2933 3311 -2 306 313 94 10 chr4 22588328 22588492 -179739855 + MIR SINE MIR 23 206 -56 187 348 0 14 chr4 22588594 22588663 -179739684 - MIR SINE MIR -115 147 80 273 29 0 0 chr4 22588871 22588905 -179739442 + (TG)n Simple_repeat Simple_repeat 2 35 0 452 164 77 0 chr4 22589546 22589650 -179738697 + L1MA2 LINE L1 6193 6304 0 471 314 100 9 chr4 22589712 22589922 -179738425 - MIR SINE MIR -1 261 33 1936 145 0 20 chr4 22590198 22590501 -179737846 - AluSx SINE Alu -15 297 1 2219 101 10 0 chr4 22590785 22591091 -179737256 - AluY SINE Alu 0 311 3 303 270 113 5 chr4 22591151 22591309 -179737038 + MIR SINE MIR 2 262 0 349 275 69 46 chr4 22591312 22591443 -179736904 - MIR SINE MIR -13 249 116 2222 94 0 0 chr4 22591593 22591870 -179736477 + AluSc SINE Alu 20 296 -13 422 277 38 22 chr4 22592440 22592624 -179735723 - MER5A DNA MER1_type -2 187 1 2265 220 77 58 chr4 22594022 22594658 -179733689 - MLT1E1 LTR MaLR -6 648 1 304 332 121 15 chr4 22595193 22595327 -179733020 + MIR SINE MIR 43 206 -56 2114 183 47 19 chr4 22595327 22595749 -179732598 + Tigger2a DNA MER2_type 1 434 0 304 332 121 15 chr4 22595749 22595813 -179732534 + MIR SINE MIR 206 262 0 207 400 11 0 chr4 22595827 22595917 -179732430 + L2 LINE L2 3169 3259 -13 347 377 43 56 chr4 22596203 22596508 -179731839 + L2 LINE L2 2970 3270 -2 2267 107 72 17 chr4 22597842 22598187 -179730160 + THE1B LTR MaLR 1 364 0 449 276 39 55 chr4 22599971 22600225 -179728122 - MER112 DNA MER1_type -3 253 4 268 267 17 0 chr4 22600728 22600788 -179727559 - MER96 DNA MER1_type? -24 151 91 2002 149 20 0 chr4 22600855 22601156 -179727191 + AluSx SINE Alu 1 307 -5 183 381 64 20 chr4 22601403 22601652 -179726695 + L3 LINE CR1 1065 1324 -253 273 194 11 21 chr4 22601801 22601894 -179726453 + GA-rich Low_complexity Low_complexity 4 95 0 886 178 7 7 chr4 22601911 22602350 -179725997 + GA-rich Low_complexity Low_complexity 1 439 0 258 32 0 0 chr4 22603311 22603342 -179725005 + (TA)n Simple_repeat Simple_repeat 2 32 0 5635 155 28 10 chr4 22603342 22605280 -179723067 - L1MA3 LINE L1 -41 7683 5709 14969 155 23 30 chr4 22605282 22609168 -179719179 - L1MA3 LINE L1 -2506 5059 1186 302 349 83 0 chr4 22609820 22609929 -179718418 - L2 LINE L2 -219 3053 2936 334 295 26 0 chr4 22611744 22611822 -179716525 - L2 LINE L2 -2 3270 3191 274 405 98 24 chr4 22611839 22612135 -179716212 + L2 LINE L2 2932 3249 -23 745 340 133 26 chr4 22612515 22613259 -179715088 + L2 LINE L2 2211 3032 -240 207 364 71 36 chr4 22613374 22613514 -179714833 + L2 LINE L2 3118 3262 -10 416 318 151 11 chr4 22614289 22614468 -179713879 + MIR SINE MIR 7 210 -52 1889 251 38 0 chr4 22614662 22615192 -179713155 - L1MB7 LINE L1 0 6184 5635 200 349 24 32 chr4 22615339 22615465 -179712882 + MIR3 SINE MIR 53 177 -31 318 335 45 13 chr4 22615794 22615949 -179712398 - MARNA DNA Mariner -40 546 387 451 303 42 48 chr4 22616248 22616704 -179711643 - L1ME3A LINE L1 -248 5922 5470 437 298 24 16 chr4 22616869 22616993 -179711354 + MIR3 SINE MIR 82 206 -2 269 250 0 0 chr4 22617247 22617311 -179711036 + GA-rich Low_complexity Low_complexity 6 69 0 379 312 122 34 chr4 22617399 22617726 -179710621 - MARNA DNA Mariner -221 365 10 231 357 10 31 chr4 22617911 22618009 -179710338 + MIR SINE MIR 12 107 -155 378 337 87 22 chr4 22618025 22618301 -179710046 - MLT1J LTR MaLR -8 503 210 1093 52 0 0 chr4 22618320 22618454 -179709893 + AluY SINE Alu 171 304 -7 1089 185 0 0 chr4 22618625 22618803 -179709544 + AluSg/x SINE Alu 133 310 0 28 29 0 0 chr4 22618878 22618913 -179709434 + AT_rich Low_complexity Low_complexity 1 35 0 191 188 104 0 chr4 22620206 22620254 -179708093 - MIR SINE MIR -101 161 109 975 241 101 19 chr4 22621108 22621485 -179706862 + MLT1C LTR MaLR 59 466 -1 228 279 156 34 chr4 22622547 22622726 -179705621 - MIR SINE MIR -42 220 20 242 343 139 7 chr4 22623796 22623933 -179704414 - MER5A DNA MER1_type 0 189 35 327 217 46 105 chr4 22623986 22624138 -179704209 - MIR SINE MIR -20 242 100 308 271 18 118 chr4 22624803 22625032 -179703315 - MIR SINE MIR -36 226 21 1909 195 131 37 chr4 22625125 22625643 -179702704 + MLT1F1 LTR MaLR 1 567 0 38 51 0 0 chr4 22626235 22626294 -179702053 + AT_rich Low_complexity Low_complexity 1 59 0 336 124 57 0 chr4 22626309 22626414 -179701933 + (TA)n Simple_repeat Simple_repeat 1 111 0 331 279 0 18 chr4 22627740 22627851 -179700496 - MLT1J LTR MaLR -458 109 1 269 288 13 115 chr4 22627944 22628170 -179700177 + MIR SINE MIR 21 223 -39 287 244 25 144 chr4 22629005 22629206 -179699141 + MER69A DNA AcHobo 1 177 0 383 324 28 35 chr4 22629504 22629649 -179698698 + MIR3 SINE MIR 2 145 -63 258 32 0 0 chr4 22629930 22629961 -179698386 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 220 326 11 34 chr4 22630050 22630139 -179698208 - L2 LINE L2 -1762 1552 1466 38 51 0 0 chr4 22630311 22630370 -179697977 + AT_rich Low_complexity Low_complexity 1 59 0 211 122 41 0 chr4 22630385 22630434 -179697913 + (TA)n Simple_repeat Simple_repeat 2 52 0 453 204 292 15 chr4 22630778 22630915 -179697432 - MER5A DNA MER1_type 0 189 15 26 0 0 0 chr4 22631089 22631115 -179697232 + AT_rich Low_complexity Low_complexity 1 26 0 249 315 33 22 chr4 22631125 22631217 -179697130 + MIR SINE MIR 8 100 -162 956 280 113 25 chr4 22631227 22631698 -179696649 - LTR33A LTR ERVL -11 512 1 202 277 15 0 chr4 22631767 22631832 -179696515 + MIR SINE MIR 166 231 -31 457 339 96 21 chr4 22633163 22633402 -179694945 + MIR SINE MIR 6 262 0 22 35 0 0 chr4 22634209 22634238 -179694109 + AT_rich Low_complexity Low_complexity 1 29 0 1951 151 7 57 chr4 22635286 22635341 -179693006 + MLT1B LTR MaLR 1 57 -333 2267 131 28 11 chr4 22635341 22635699 -179692648 + THE1B LTR MaLR 1 364 0 1951 151 7 57 chr4 22635699 22636048 -179692299 + MLT1B LTR MaLR 57 385 -5 35784 89 6 10 chr4 22636440 22642613 -179685734 + L1PA6 LINE L1 11 6154 0 514 159 80 0 chr4 22642815 22642927 -179685420 + MLT2B2 LTR ERVL 1 121 -394 595 131 0 10 chr4 22642927 22643026 -179685321 + MER4A LTR ERV1 1 98 -566 1619 119 191 72 chr4 22643026 22643387 -179684960 + MER4A LTR ERV1 261 664 0 647 237 65 40 chr4 22643387 22643694 -179684653 + MLT2B2 LTR ERVL 117 474 -41 183 162 0 0 chr4 22644296 22644333 -179684014 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 22 35 0 0 chr4 22644583 22644612 -179683735 + AT_rich Low_complexity Low_complexity 1 29 0 273 57 0 0 chr4 22645303 22645338 -179683009 + (CAT)n Simple_repeat Simple_repeat 2 36 0 472 329 103 13 chr4 22645442 22645676 -179682671 + MIR SINE MIR 8 262 0 339 270 75 52 chr4 22646715 22646889 -179681458 + MIR SINE MIR 12 189 -73 1710 194 90 52 chr4 22697334 22697833 -179630514 - L1MB8 LINE L1 0 6178 5661 1655 191 20 7 chr4 22697836 22698129 -179630218 - AluJb SINE Alu -14 298 2 5668 58 1 3 chr4 22698154 22698876 -179629471 - L1PA5 LINE L1 -4 6150 5430 440 319 30 24 chr4 22698978 22699147 -179629200 - MIR SINE MIR -77 185 16 208 261 0 0 chr4 22700219 22700265 -179628082 - L2 LINE L2 -4 3309 3264 2031 125 31 0 chr4 22701153 22701502 -179626845 + AluSx SINE Alu 7 312 0 281 174 14 0 chr4 22702701 22702770 -179625577 + GA-rich Low_complexity Low_complexity 2 71 0 1353 193 37 84 chr4 22702813 22703196 -179625151 + MLT1A1 LTR MaLR 1 365 0 196 313 16 16 chr4 22703995 22704059 -179624288 + MIR3 SINE MIR 12 75 -133 189 0 0 0 chr4 22704182 22704203 -179624144 + (CA)n Simple_repeat Simple_repeat 2 22 0 711 324 36 8 chr4 22704364 22704614 -179623733 - MIR SINE MIR -3 259 3 414 196 0 0 chr4 22704859 22704956 -179623391 + (TCCA)n Simple_repeat Simple_repeat 2 98 0 442 339 109 9 chr4 22704967 22705197 -179623150 + MIR SINE MIR 8 260 -2 797 209 6 29 chr4 22705375 22705547 -179622800 + AluJb SINE Alu 121 288 -24 408 325 88 31 chr4 22705568 22705762 -179622585 - MIR SINE MIR -13 249 45 2354 71 0 19 chr4 22705763 22706071 -179622276 - AluY SINE Alu -9 302 1 851 238 20 139 chr4 22706248 22706736 -179621611 - L2 LINE L2 0 3313 2884 459 0 0 0 chr4 22706745 22706796 -179621551 + (TA)n Simple_repeat Simple_repeat 1 51 0 288 0 0 0 chr4 22706795 22706827 -179621520 + (CA)n Simple_repeat Simple_repeat 2 33 0 * 180 0 0 0 chr4 22706827 22706847 -179621500 + (TG)n Simple_repeat Simple_repeat 2 21 0 299 304 22 0 chr4 22706860 22706952 -179621395 - L2 LINE L2 -1670 1644 1551 222 317 83 41 chr4 22707038 22707183 -179621164 - L2 LINE L2 -469 2845 2695 460 326 102 14 chr4 22707384 22707599 -179620748 + MIR SINE MIR 29 262 0 480 93 0 0 chr4 22708296 22708371 -179619976 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 203 182 0 0 chr4 22708374 22708407 -179619940 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 572 174 0 20 chr4 22709068 22709166 -179619181 + AluJo SINE Alu 87 182 -130 872 310 182 23 chr4 22710603 22711261 -179617086 + L2 LINE L2 1413 2175 -1139 818 312 112 36 chr4 22711262 22711603 -179616744 + L2 LINE L2 2508 2822 -491 1435 193 2 98 chr4 22711603 22712002 -179616345 - MLT1A1 LTR MaLR -3 362 2 818 312 112 36 chr4 22712002 22712392 -179615955 + L2 LINE L2 2822 3309 -4 2365 146 29 43 chr4 22712870 22713362 -179614985 + MER31A LTR ERV1 1 485 0 187 374 12 0 chr4 22713577 22713660 -179614687 + MIR SINE MIR 178 261 -1 2307 106 3 0 chr4 22713797 22714108 -179614239 - AluSp SINE Alu -1 312 1 2472 229 72 15 chr4 22714379 22715050 -179613297 + Charlie1 DNA MER1_type 1496 2204 -557 753 337 106 18 chr4 22715077 22715513 -179612834 + L2 LINE L2 2840 3313 0 269 357 62 0 chr4 22715546 22715658 -179612689 - MIR SINE MIR -138 124 6 318 247 144 46 chr4 22715787 22716050 -179612297 - LTR37A LTR ERV1 -78 348 60 529 192 42 0 chr4 22716915 22717035 -179611312 + Charlie5 DNA MER1_type 4 128 -2484 476 225 74 48 chr4 22717038 22717066 -179611281 + Charlie5 DNA MER1_type 2243 2269 -355 1479 158 59 49 chr4 22717066 22717370 -179610977 - AluJo SINE Alu 0 312 6 476 225 74 48 chr4 22717370 22717612 -179610735 + Charlie5 DNA MER1_type 2269 2520 -104 184 231 0 0 chr4 22717623 22717662 -179610685 - L2 LINE L2 0 3272 3234 1777 263 62 8 chr4 22718225 22718761 -179609586 + MLT1F1 LTR MaLR 1 565 -2 1459 184 0 72 chr4 22719506 22719826 -179608521 + AluJb SINE Alu 1 297 -15 1946 131 7 4 chr4 22720984 22721259 -179607088 - AluSq SINE Alu -37 276 1 2057 136 27 38 chr4 22721439 22721807 -179606540 - THE1B LTR MaLR 0 364 1 505 256 33 60 chr4 22722570 22722785 -179605562 + MIR SINE MIR 41 249 -13 2394 66 3 7 chr4 22722818 22723121 -179605226 - AluY SINE Alu -9 302 1 190 295 26 51 chr4 22723542 22723620 -179604727 + L2 LINE L2 2746 2821 -493 286 389 11 32 chr4 22723656 22723841 -179604506 + L2 LINE L2 2873 3053 -219 940 255 62 0 chr4 22726489 22726732 -179601615 + L2 LINE L2 2509 2766 -548 184 277 0 21 chr4 22727315 22727362 -179600985 - MIR SINE MIR -99 163 118 462 114 0 0 chr4 22727685 22727755 -179600592 + (GA)n Simple_repeat Simple_repeat 1 70 0 180 0 0 0 chr4 22728094 22728114 -179600233 + (CA)n Simple_repeat Simple_repeat 2 21 0 524 331 77 15 chr4 22729359 22729631 -179598716 - L2 LINE L2 -337 2977 2689 260 177 210 0 chr4 22730083 22730145 -179598202 - L2 LINE L2 -4 3309 3235 2141 128 20 51 chr4 22730156 22730548 -179597799 + MLT1B LTR MaLR 11 390 0 741 297 72 70 chr4 22730920 22731662 -179596685 + L2 LINE L2 2576 3311 -2 400 350 47 43 chr4 22732673 22732930 -179595417 + MIR SINE MIR 5 262 0 219 308 82 27 chr4 22733789 22733935 -179594412 - L2 LINE L2 0 3313 3160 375 321 19 0 chr4 22734901 22735007 -179593340 + MER81 DNA DNA 6 113 -1 229 145 65 0 chr4 22735487 22735549 -179592798 + (TA)n Simple_repeat Simple_repeat 1 66 0 5781 60 0 2 chr4 22735748 22736549 -179591798 - L1P2 LINE L1 -708 5446 4647 1873 176 6 0 chr4 22736553 22736899 -179591448 - L1M4 LINE L1 -530 5654 5307 197 388 52 0 chr4 22737560 22737676 -179590671 - L2 LINE L2 -1 3271 3150 196 308 88 22 chr4 22737681 22737772 -179590575 + L2 LINE L2 3136 3232 -40 268 324 0 0 chr4 22740120 22740188 -179588159 + MLT1K LTR MaLR 144 211 -377 28 61 0 0 chr4 22740728 22740777 -179587570 + AT_rich Low_complexity Low_complexity 1 49 0 286 250 22 11 chr4 22741277 22741369 -179586978 + MER34 LTR ERV1 450 542 0 25 31 0 0 chr4 22741385 22741417 -179586930 + AT_rich Low_complexity Low_complexity 1 32 0 210 91 0 0 chr4 22741478 22741511 -179586836 + (CAT)n Simple_repeat Simple_repeat 3 35 0 314 281 0 20 chr4 22741761 22741914 -179586433 + (TA)n Simple_repeat Simple_repeat 1 150 0 217 195 0 0 chr4 22741967 22742008 -179586339 - MIR SINE MIR -96 166 126 2205 98 20 0 chr4 22742013 22742308 -179586039 + AluSx SINE Alu 1 301 -11 1275 246 93 12 chr4 22742402 22742735 -179585612 + MLT1D LTR MaLR 144 503 -2 1061 110 0 0 chr4 22743142 22743287 -179585060 + L1PA10 LINE L1 6009 6153 -15 25 31 0 0 chr4 22743366 22743398 -179584949 + AT_rich Low_complexity Low_complexity 1 32 0 189 315 14 14 chr4 22744372 22744445 -179583902 - MIR3 SINE MIR -15 193 121 778 296 106 48 chr4 22744612 22745133 -179583214 + MLT1K LTR MaLR 10 560 -28 415 113 0 0 chr4 22745146 22745208 -179583139 - MER53 DNA DNA 0 189 128 940 116 0 0 chr4 22745209 22745338 -179583009 - AluSg/x SINE Alu -15 297 169 721 102 22 15 chr4 22746017 22746154 -179582193 + (TTCTC)n Simple_repeat Simple_repeat 1 138 0 308 207 306 0 chr4 22746308 22746419 -179581928 - MIR3 SINE MIR -14 194 50 1862 108 4 0 chr4 22746434 22746683 -179581664 + AluSq SINE Alu 7 256 -57 444 238 16 33 chr4 22747488 22747610 -179580737 + MLT1K LTR MaLR 453 572 -16 255 304 120 32 chr4 22747771 22747896 -179580451 + L2 LINE L2 3137 3272 0 644 307 139 12 chr4 22748141 22748473 -179579874 - L2 LINE L2 0 3313 2940 3265 172 24 74 chr4 22748473 22748980 -179579367 + L1MB1 LINE L1 5365 5819 -349 2100 117 15 6 chr4 22748980 22749313 -179579034 - L1MA3 LINE L1 -2 6303 5968 3265 172 24 74 chr4 22749313 22749600 -179578747 + L1MB1 LINE L1 5819 6119 -49 1743 134 0 38 chr4 22749609 22749870 -179578477 + AluSx SINE Alu 35 285 -27 278 217 121 97 chr4 22749971 22750178 -179578169 - L2 LINE L2 -374 2940 2729 228 137 0 0 chr4 22751440 22751491 -179576856 + (TG)n Simple_repeat Simple_repeat 1 51 0 183 114 0 0 chr4 22751549 22751584 -179576763 + (A)n Simple_repeat Simple_repeat 1 35 0 213 39 0 0 chr4 22752329 22752355 -179575992 + (TC)n Simple_repeat Simple_repeat 2 27 0 1087 182 0 0 chr4 22752513 22752689 -179575658 + AluSg/x SINE Alu 134 309 -3 291 114 0 0 chr4 22753520 22753564 -179574783 + (ATG)n Simple_repeat Simple_repeat 2 45 0 24 91 0 0 chr4 22753669 22753735 -179574612 + AT_rich Low_complexity Low_complexity 1 66 0 376 304 76 79 chr4 22754451 22754767 -179573580 + L2 LINE L2 2551 2865 -449 5394 147 48 5 chr4 22754845 22756017 -179572330 + L1MA9 LINE L1 5027 6249 -63 2167 92 3 16 chr4 22756362 22756665 -179571682 - AluSx SINE Alu -13 299 1 339 96 0 0 chr4 22756815 22756867 -179571480 + (TG)n Simple_repeat Simple_repeat 1 52 0 2105 127 3 3 chr4 22758079 22758426 -179569921 + AluSg SINE Alu 1 347 0 27 0 0 0 chr4 22758980 22759007 -179569340 + AT_rich Low_complexity Low_complexity 1 27 0 1662 172 0 26 chr4 22759556 22759859 -179568488 + AluJo SINE Alu 1 295 -17 1032 219 115 29 chr4 22759876 22760223 -179568124 + L1MB8 LINE L1 5796 6172 -6 404 180 22 22 chr4 22760476 22760565 -179567782 - L2 LINE L2 0 3313 3225 387 227 11 11 chr4 22761027 22761115 -179567232 - L2 LINE L2 -1 3312 3225 1454 163 20 0 chr4 22762603 22762854 -179565493 - L1MC1 LINE L1 -5 6328 6073 2039 153 34 3 chr4 22762954 22763308 -179565039 - L1MC1 LINE L1 -562 5771 5407 466 266 102 53 chr4 22764181 22764425 -179563922 - MIR SINE MIR -5 257 2 441 0 0 0 chr4 22765674 22765723 -179562624 + (TA)n Simple_repeat Simple_repeat 2 50 0 807 145 8 8 chr4 22766904 22767035 -179561312 + FLAM_C SINE Alu 1 131 -12 265 174 196 54 chr4 22767645 22767737 -179560610 - MIR SINE MIR -157 105 1 1608 140 31 71 chr4 22768082 22768420 -179559927 + MER1B DNA MER1_type 13 339 0 484 316 45 11 chr4 22768428 22768605 -179559742 + MIR SINE MIR 48 230 -32 628 261 102 31 chr4 22770153 22770379 -179557968 + MIR SINE MIR 15 256 -6 302 252 87 68 chr4 22770401 22770504 -179557843 + L2 LINE L2 3148 3252 -20 396 0 0 0 chr4 22771465 22771509 -179556838 + (TG)n Simple_repeat Simple_repeat 2 45 0 22 94 0 0 chr4 22772266 22772330 -179556017 + AT_rich Low_complexity Low_complexity 1 64 0 2496 54 0 0 chr4 22772469 22772765 -179555582 + AluY SINE Alu 5 300 -11 353 251 73 78 chr4 22773109 22773328 -179555019 + MLT1J LTR MaLR 107 324 -187 180 77 0 0 chr4 22774421 22774447 -179553900 + (CAAAA)n Simple_repeat Simple_repeat 4 29 0 27 0 0 0 chr4 22774496 22774523 -179553824 + AT_rich Low_complexity Low_complexity 1 27 0 2548 55 0 7 chr4 22774718 22775027 -179553320 - AluY SINE Alu -4 307 1 1788 285 157 18 chr4 22775996 22776952 -179551395 + L2 LINE L2 1794 3008 -305 1228 176 140 0 chr4 22776972 22777250 -179551097 + MLT2C2 LTR ERVL 1 317 -147 1162 214 26 13 chr4 22777256 22777490 -179550857 + AluJb SINE Alu 22 258 -54 17382 36 12 2 chr4 22777490 22780358 -179547989 + L1PA5 LINE L1 3270 6150 -4 789 216 25 20 chr4 22780386 22780585 -179547762 - L1ME1 LINE L1 -285 5881 5682 568 178 75 0 chr4 22780603 22780710 -179547637 + MLT2C2 LTR ERVL 302 416 -48 1070 233 47 37 chr4 22780758 22781080 -179547267 + MLT1D LTR MaLR 179 503 -2 2022 190 55 41 chr4 22781080 22781622 -179546725 - MER44D DNA MER2_type 0 605 1 3766 211 13 47 chr4 22781627 22782541 -179545806 + MLT1D-int LTR MaLR 2 884 -487 922 238 47 101 chr4 22782718 22783016 -179545331 + MLT1D-int LTR MaLR 961 1242 -129 264 227 13 13 chr4 22783017 22783092 -179545255 + MLT1E2 LTR MaLR 552 626 0 213 39 0 0 chr4 22783212 22783238 -179545109 + (TA)n Simple_repeat Simple_repeat 1 26 0 457 208 21 83 chr4 22783264 22783408 -179544939 + L2 LINE L2 3179 3313 0 182 93 0 70 chr4 22783443 22783486 -179544861 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 201 245 20 0 chr4 22784138 22784187 -179544160 + GA-rich Low_complexity Low_complexity 5 54 0 216 417 27 16 chr4 22784228 22784415 -179543932 + MIR SINE MIR 32 220 -42 206 367 13 0 chr4 22785063 22785142 -179543205 + MIR SINE MIR 109 188 -74 505 291 216 0 chr4 22786006 22786205 -179542142 + MIR SINE MIR 16 257 -5 201 175 0 0 chr4 22786357 22786397 -179541950 + A-rich Low_complexity Low_complexity 1 40 0 326 237 40 0 chr4 22786947 22787023 -179541324 - MIR SINE MIR -70 192 114 472 308 154 4 chr4 22787418 22787645 -179540702 + MIR SINE MIR 2 262 0 200 360 27 0 chr4 22787753 22787828 -179540519 - MER5A DNA MER1_type -83 106 30 466 281 14 22 chr4 22787853 22787992 -179540355 + MER5A DNA MER1_type 46 183 -6 494 257 9 0 chr4 22788526 22788639 -179539708 - MER81 DNA DNA 0 114 1 209 83 28 0 chr4 22789108 22789144 -179539203 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 237 226 57 0 chr4 22789161 22789214 -179539133 - MIR SINE MIR -89 173 118 250 323 0 0 chr4 22789293 22789355 -179538992 + polypyrimidine Low_complexity Low_complexity 6 67 0 378 0 0 0 chr4 22789398 22789440 -179538907 + (TA)n Simple_repeat Simple_repeat 2 43 0 212 197 14 84 chr4 22789754 22789825 -179538522 - MIR SINE MIR -133 129 64 4090 19 0 0 chr4 22791582 22792055 -179536292 - L1PA2 LINE L1 -6 6149 5677 3763 291 121 17 chr4 22792184 22792642 -179535705 + L2 LINE L2 1185 1594 -1720 186 43 0 0 chr4 22792642 22792665 -179535682 + (CAT)n Simple_repeat Simple_repeat 1 23 0 3763 291 121 17 chr4 22792665 22793813 -179534534 + L2 LINE L2 1594 2957 -357 1234 234 49 40 chr4 22793992 22794317 -179534030 - MLT1A2 LTR MaLR 0 374 47 986 253 92 3 chr4 22794468 22794607 -179533740 + MER5C DNA MER1_type 4 129 -195 1712 154 151 21 chr4 22794607 22794984 -179533363 + MSTA LTR MaLR 3 428 0 986 253 92 3 chr4 22794984 22795137 -179533210 + MER5C DNA MER1_type 129 322 -2 5946 141 20 12 chr4 22795491 22795789 -179532558 - L1MA6 LINE L1 0 6300 6006 2155 114 51 17 chr4 22795789 22796141 -179532206 - THE1B LTR MaLR 0 364 1 5946 141 20 12 chr4 22796141 22796349 -179531998 - L1MA6 LINE L1 -294 6006 5801 423 68 0 0 chr4 22796349 22796408 -179531939 + (TG)n Simple_repeat Simple_repeat 2 60 0 5946 141 20 12 chr4 22796408 22796428 -179531919 - L1MA6 LINE L1 -499 5801 5783 328 85 0 34 chr4 22796428 22796487 -179531860 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 5946 141 20 12 chr4 22796487 22796976 -179531371 - L1MA6 LINE L1 -517 5783 5275 1151 144 6 2 chr4 22796973 22797179 -179531168 - L1MB8 LINE L1 -187 5991 5809 * 3685 246 36 5 chr4 22797166 22798303 -179530044 - L1M4 LINE L1 -2365 3781 2610 340 202 12 12 chr4 22798300 22798384 -179529963 + L1M4 LINE L1 2596 2679 -3467 * 30 0 0 0 chr4 22798404 22798434 -179529913 + AT_rich Low_complexity Low_complexity 1 30 0 399 332 97 20 chr4 22799147 22799343 -179529004 + MIR SINE MIR 32 242 -20 183 204 0 0 chr4 22800180 22800234 -179528113 + GA-rich Low_complexity Low_complexity 2 55 0 221 0 0 33 chr4 22800650 22800680 -179527667 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 408 20 0 0 chr4 22800680 22800729 -179527618 + (CA)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr4 22800925 22800946 -179527401 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr4 22802636 22802682 -179525665 + AT_rich Low_complexity Low_complexity 1 46 0 1405 207 70 0 chr4 22802683 22802954 -179525393 - AluJb SINE Alu -22 290 1 268 282 13 13 chr4 22803902 22803980 -179524367 + GA-rich Low_complexity Low_complexity 3 80 0 185 337 105 23 chr4 22804025 22804111 -179524236 - MIR SINE MIR -74 188 96 711 247 5 32 chr4 22804553 22804743 -179523604 + MER5A DNA MER1_type 2 186 -3 222 100 0 0 chr4 22805313 22805343 -179523004 - MIR SINE MIR -114 148 119 493 311 145 23 chr4 22805755 22806099 -179522248 + MLT1J2 LTR MaLR 65 450 0 423 272 123 31 chr4 22806330 22806525 -179521822 + MIR SINE MIR 29 241 -21 793 291 160 0 chr4 22806596 22806871 -179521476 + MLT1I LTR MaLR 91 409 0 1953 166 0 0 chr4 22807322 22807623 -179520724 - AluSx SINE Alu -11 301 1 2163 103 0 20 chr4 22808324 22808625 -179519722 + AluSg SINE Alu 1 295 -15 43 0 0 0 chr4 22808629 22808672 -179519675 + AT_rich Low_complexity Low_complexity 1 43 0 191 150 125 0 chr4 22808923 22808963 -179519384 - MIR SINE MIR -64 144 100 1252 204 81 32 chr4 22809903 22810247 -179518100 + MLT1A2 LTR MaLR 1 361 -13 309 247 55 0 chr4 22810543 22810616 -179517731 - L2 LINE L2 -34 3279 3203 249 267 47 12 chr4 22810918 22811004 -179517343 - L3 LINE CR1 -865 712 624 24 0 0 0 chr4 22811704 22811728 -179516619 + AT_rich Low_complexity Low_complexity 1 24 0 225 65 0 0 chr4 22811842 22811873 -179516474 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 209 328 0 30 chr4 22812485 22812552 -179515795 + MIR SINE MIR 20 84 -178 330 267 96 99 chr4 22813350 22813755 -179514592 + L1M4 LINE L1 3094 3497 -2649 368 282 28 36 chr4 22814272 22814520 -179513827 + L1M4 LINE L1 4378 4623 -1523 300 313 118 31 chr4 22814622 22814802 -179513545 + L1M4 LINE L1 4759 4959 -1187 1469 237 39 61 chr4 22814802 22815360 -179512987 - LTR55 LTR ERV -2 546 1 300 313 118 31 chr4 22815360 22815374 -179512973 + L1M4 LINE L1 4959 4970 -1176 7848 38 0 0 chr4 22815521 22816477 -179511870 - L1P LINE L1 -3599 2547 1592 2879 31 37 0 chr4 22816479 22816833 -179511514 + L1PA5 LINE L1 5775 6141 -13 23 33 0 0 chr4 22816833 22816863 -179511484 + AT_rich Low_complexity Low_complexity 1 30 0 2436 141 30 30 chr4 22816930 22817114 -179511233 + MSTA LTR MaLR 1 184 -244 2188 119 0 6 chr4 22817114 22817425 -179510922 + AluSg SINE Alu 1 309 -1 2436 141 30 30 chr4 22817425 22817666 -179510681 + MSTA LTR MaLR 183 426 -2 2220 112 0 0 chr4 22817739 22818035 -179510312 + AluSq SINE Alu 1 296 -17 352 294 112 69 chr4 22818286 22818562 -179509785 + L2 LINE L2 3022 3309 -4 247 308 54 32 chr4 22818841 22819026 -179509321 + L2 LINE L2 2695 2883 -431 231 389 23 78 chr4 22819115 22819462 -179508885 + L2 LINE L2 2918 3245 -27 3940 242 114 71 chr4 22820270 22820414 -179507933 - L1MC3 LINE L1 -20 7765 7629 1777 148 25 14 chr4 22820414 22820697 -179507650 - AluJb SINE Alu -26 286 1 3940 242 114 71 chr4 22820697 22821126 -179507221 - L1MC3 LINE L1 -156 7629 7220 228 292 0 14 chr4 22821126 22821198 -179507149 - MLT1F1 LTR MaLR -457 110 40 3940 242 114 71 chr4 22821198 22821912 -179506435 - L1MC3 LINE L1 -565 7220 6347 262 313 70 9 chr4 22822672 22822787 -179505560 + L2 LINE L2 3150 3271 -1 27 62 0 0 chr4 22823624 22823672 -179504675 + AT_rich Low_complexity Low_complexity 1 48 0 233 286 286 9 chr4 22824414 22824519 -179503828 - L2 LINE L2 -259 3054 2921 374 299 186 33 chr4 22824630 22824904 -179503443 + MLT1J2 LTR MaLR 1 316 -134 1851 154 17 3 chr4 22824904 22825196 -179503151 - AluJo SINE Alu -16 296 1 1636 178 13 30 chr4 22825749 22826047 -179502300 - AluJo SINE Alu -19 293 1 308 313 97 23 chr4 22827503 22827679 -179500668 - MIR SINE MIR -26 236 48 22 0 0 0 chr4 22827839 22827861 -179500486 + AT_rich Low_complexity Low_complexity 1 22 0 2106 118 10 14 chr4 22828017 22828313 -179500034 + AluSg SINE Alu 2 296 -14 22 0 0 0 chr4 22828396 22828418 -179499929 + AT_rich Low_complexity Low_complexity 1 22 0 751 263 99 33 chr4 22828597 22828943 -179499404 + LTR41 LTR ERVL 3 438 -335 331 298 88 23 chr4 22829378 22829549 -179498798 + MER5A DNA MER1_type 7 188 -1 * 440 295 58 13 chr4 22829405 22829561 -179498786 - MER5A DNA MER1_type -23 166 4 181 234 21 0 chr4 22829841 22829888 -179498459 + L2 LINE L2 542 589 -2725 2268 128 6 6 chr4 22830148 22830485 -179497862 + MER1B DNA MER1_type 1 337 0 347 312 36 0 chr4 22830547 22830672 -179497675 + MIR SINE MIR 32 161 -47 273 255 41 61 chr4 22830664 22830762 -179497585 + MER91C DNA MER1_type 42 137 -3 * 227 375 42 0 chr4 22830762 22830835 -179497512 + MIR SINE MIR 177 253 -9 249 318 154 23 chr4 22830833 22831053 -179497294 + L2 LINE L2 2809 3057 -215 384 247 32 6 chr4 22831174 22831332 -179497015 + MER113 DNA MER1_type? 2 163 -358 217 269 194 0 chr4 22831452 22831519 -179496828 + L2 LINE L2 3160 3239 -33 224 297 0 0 chr4 22832005 22832079 -179496268 + (TAAA)n Simple_repeat Simple_repeat 2 75 0 2294 114 0 0 chr4 22832572 22832869 -179495478 + AluSg SINE Alu 1 297 -13 28 0 0 0 chr4 22832876 22832904 -179495443 + AT_rich Low_complexity Low_complexity 1 28 0 338 303 27 73 chr4 22833840 22834030 -179494317 + MIR SINE MIR 15 208 -54 258 32 0 0 chr4 22834743 22834774 -179493573 + (TC)n Simple_repeat Simple_repeat 1 31 0 216 0 0 0 chr4 22834773 22834797 -179493550 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 258 32 0 0 chr4 22835211 22835242 -179493105 + (TG)n Simple_repeat Simple_repeat 2 32 0 218 191 0 0 chr4 22835408 22835455 -179492892 + CT-rich Low_complexity Low_complexity 2 48 0 234 105 0 0 chr4 22835510 22835548 -179492799 + (CA)n Simple_repeat Simple_repeat 1 38 0 222 372 35 35 chr4 22836065 22836178 -179492169 + L2 LINE L2 2867 2979 -293 206 396 30 10 chr4 22837511 22837612 -179490735 - MER5A DNA MER1_type -30 159 57 2261 114 7 0 chr4 22837704 22838103 -179490244 + AluSx SINE Alu 1 401 0 318 337 32 42 chr4 22838951 22839141 -179489206 + L2 LINE L2 2871 3058 -214 2108 120 3 0 chr4 22839342 22839633 -179488714 + AluSx SINE Alu 2 293 -19 694 340 25 0 chr4 22839748 22839986 -179488361 + MIR SINE MIR 3 246 -16 296 181 16 150 chr4 22840220 22840314 -179488033 - Charlie5 DNA MER1_type -16 2608 2552 1807 167 14 0 chr4 22840314 22840607 -179487740 - AluJo SINE Alu -14 298 2 296 181 16 150 chr4 22840607 22840705 -179487642 - Charlie5 DNA MER1_type -72 2552 2442 231 271 0 0 chr4 22840708 22840756 -179487591 - Charlie5 DNA MER1_type -2543 69 22 1989 136 26 7 chr4 22840775 22841077 -179487270 - AluSx SINE Alu -4 308 1 333 221 39 13 chr4 22841989 22842066 -179486281 + MLT1L LTR MaLR 2 80 -535 270 297 97 30 chr4 22842294 22842459 -179485888 + MLT1L LTR MaLR 433 608 -7 23 0 0 0 chr4 22842612 22842635 -179485712 + AT_rich Low_complexity Low_complexity 1 23 0 300 336 21 36 chr4 22842755 22842895 -179485452 - MIR SINE MIR -50 212 75 391 240 55 48 chr4 22842981 22843127 -179485220 - MIR SINE MIR 0 262 116 1641 114 157 0 chr4 22843358 22843620 -179484727 + AluSq SINE Alu 1 303 0 387 256 29 76 chr4 22844086 22844258 -179484089 + MIR SINE MIR 49 212 -50 1904 117 3 86 chr4 22844258 22844582 -179483765 + AluSx SINE Alu 1 297 -15 248 250 0 31 chr4 22845492 22845556 -179482791 + GA-rich Low_complexity Low_complexity 4 65 0 870 130 0 32 chr4 22845557 22845742 -179482605 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 223 311 58 10 chr4 22846443 22846546 -179481801 + MIR SINE MIR 146 253 -9 440 168 115 44 chr4 22846791 22846904 -179481443 + MER110A LTR ERV1 86 206 -262 269 332 80 9 chr4 22847011 22847221 -179481126 + MIR SINE MIR 26 252 -10 1709 216 30 28 chr4 22848796 22848875 -179479472 + MSTD LTR MaLR 1 78 -318 2239 92 7 3 chr4 22848875 22849170 -179479177 + AluY SINE Alu 1 296 -15 1709 216 30 28 chr4 22849170 22849483 -179478864 + MSTD LTR MaLR 78 394 -2 184 364 9 0 chr4 22849483 22849583 -179478764 + L2 LINE L2 3210 3313 0 305 299 69 35 chr4 22851451 22851625 -179476722 - MIR SINE MIR -64 198 19 547 271 39 7 chr4 22852424 22852579 -179475768 - MIR SINE MIR -18 244 85 1188 195 13 17 chr4 22852580 22852810 -179475537 + MLT1A1 LTR MaLR 2 230 -135 339 59 0 0 chr4 22852810 22852862 -179475485 - MLT2A1 LTR ERVL 0 453 409 270 0 0 0 chr4 22852862 22852892 -179475455 + (CA)n Simple_repeat Simple_repeat 2 31 0 680 240 12 6 chr4 22852892 22853239 -179475108 + (TATATG)n Simple_repeat Simple_repeat 1 349 0 276 306 0 0 chr4 22853270 22853391 -179474956 + (TATATG)n Simple_repeat Simple_repeat 2 122 0 37 0 0 0 chr4 22853391 22853428 -179474919 + AT_rich Low_complexity Low_complexity 1 37 0 2864 67 13 11 chr4 22853434 22853810 -179474537 - MLT2A1 LTR ERVL -67 377 1 687 194 22 8 chr4 22853814 22853948 -179474399 + MLT1A1 LTR MaLR 239 374 0 248 279 0 33 chr4 22853948 22854009 -179474338 - MIR SINE MIR -173 89 31 275 221 43 93 chr4 22854811 22854951 -179473396 + MIR SINE MIR 127 259 -3 443 319 154 42 chr4 22854962 22855319 -179473028 + L2 LINE L2 2299 2695 -619 783 144 110 0 chr4 22855898 22856044 -179472303 - FRAM SINE Alu -15 161 1 665 289 72 36 chr4 22856155 22856404 -179471943 + MIR SINE MIR 5 262 0 1336 183 83 69 chr4 22856412 22856772 -179471575 + MLT1A1 LTR MaLR 1 365 0 255 79 0 0 chr4 22857041 22857079 -179471268 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 1710 192 10 13 chr4 22857083 22857390 -179470957 - AluJo SINE Alu -4 308 3 548 358 81 43 chr4 22858021 22858393 -179469954 + L2 LINE L2 2887 3272 0 2301 127 19 11 chr4 22859638 22859999 -179468348 + THE1B LTR MaLR 1 364 0 223 178 0 0 chr4 22860065 22860110 -179468237 + (TA)n Simple_repeat Simple_repeat 2 46 0 309 307 79 0 chr4 22861022 22861149 -179467198 + MIR SINE MIR 116 252 -10 2127 115 0 0 chr4 22861910 22862376 -179465971 + AluSg SINE Alu 3 468 0 236 268 18 0 chr4 22862674 22862730 -179465617 - MER58 DNA MER1_type -166 58 2 284 248 9 73 chr4 22863507 22863616 -179464731 - MIR SINE MIR 0 262 161 22 94 0 0 chr4 22864229 22864293 -179464054 + AT_rich Low_complexity Low_complexity 1 64 0 458 211 9 0 chr4 22864794 22864903 -179463444 + CT-rich Low_complexity Low_complexity 1 110 0 2042 122 14 3 chr4 22864903 22865198 -179463149 - AluSx SINE Alu -14 298 1 23 0 0 0 chr4 22865343 22865366 -179462981 + AT_rich Low_complexity Low_complexity 1 23 0 249 211 0 0 chr4 22866495 22866552 -179461795 + (TA)n Simple_repeat Simple_repeat 2 58 0 21 0 0 0 chr4 22866768 22866789 -179461558 + AT_rich Low_complexity Low_complexity 1 21 0 553 331 59 28 chr4 22867493 22867747 -179460600 + MIR SINE MIR 1 262 0 382 321 97 25 chr4 22867858 22868095 -179460252 - MIR SINE MIR -3 259 6 382 179 21 0 chr4 22868492 22868587 -179459760 + (CATTC)n Simple_repeat Simple_repeat 4 100 0 206 347 99 8 chr4 22869337 22869458 -179458889 + MER5A DNA MER1_type 7 138 -51 235 256 23 85 chr4 22869983 22870022 -179458325 - MIR SINE MIR -56 206 166 1961 154 0 7 chr4 22870022 22870315 -179458032 + AluSx SINE Alu 5 295 -17 235 256 23 85 chr4 22870315 22870404 -179457943 - MIR SINE MIR -96 166 86 1655 222 38 71 chr4 22871075 22871255 -179457092 + MLT1C LTR MaLR 6 190 -277 2326 101 0 0 chr4 22871255 22871561 -179456786 + AluSg SINE Alu 3 308 -2 1655 222 38 71 chr4 22871561 22871858 -179456489 + MLT1C LTR MaLR 190 467 0 1933 154 59 8 chr4 22872387 22872744 -179455603 + THE1C LTR MaLR 1 375 0 23 33 0 0 chr4 22873026 22873056 -179455291 + AT_rich Low_complexity Low_complexity 1 30 0 2063 114 4 0 chr4 22873221 22873502 -179454845 + AluSg SINE Alu 1 317 0 196 114 0 0 chr4 22873502 22873537 -179454810 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 485 255 0 0 chr4 22874010 22874116 -179454231 - MER82 DNA MER2_type -547 106 1 2277 120 0 0 chr4 22874411 22874720 -179453627 + AluSx SINE Alu 1 309 -3 1011 304 113 32 chr4 22875036 22875154 -179453193 + MER69 DNA AcHobo 1 108 -1118 1676 196 3 3 chr4 22875154 22875465 -179452882 - AluJo SINE Alu -1 311 1 1011 304 113 32 chr4 22875465 22875817 -179452530 + MER69 DNA AcHobo 108 509 -717 1926 242 73 55 chr4 22875954 22877008 -179451339 + MER69 DNA AcHobo 1451 2523 -3 3234 136 76 7 chr4 22877112 22877706 -179450641 + LTR24C LTR ERV1 1 635 0 288 53 0 0 chr4 22877756 22877794 -179450553 + (TC)n Simple_repeat Simple_repeat 1 38 0 1649 216 24 11 chr4 22877834 22878205 -179450142 - MLT1E2 LTR MaLR 0 626 251 1229 110 23 0 chr4 22878210 22878383 -179449964 + MER41B LTR ERV1 365 541 -94 233 210 194 0 chr4 22878378 22878440 -179449907 - MLT1E1 LTR MaLR -380 246 173 * 2904 96 103 128 chr4 22878441 22878908 -179449439 + MER41B LTR ERV1 1 534 -101 4864 58 3 0 chr4 22878908 22879525 -179448822 - L1PA7 LINE L1 0 6154 5536 2904 96 103 128 chr4 22879525 22879620 -179448727 + MER41B LTR ERV1 534 630 -5 284 210 156 12 chr4 22879651 22879810 -179448537 - MLT1E1 LTR MaLR -431 193 11 301 215 0 161 chr4 22880676 22880825 -179447522 + MLT1H LTR MaLR 425 549 0 219 192 19 0 chr4 22880883 22880935 -179447412 + (TA)n Simple_repeat Simple_repeat 2 54 0 3029 145 6 29 chr4 22881202 22881727 -179446620 - Tigger4(Zombi) DNA MER2_type -1 2730 2218 284 261 0 0 chr4 22881732 22881797 -179446550 - Tigger4(Zombi) DNA MER2_type -2666 65 1 797 251 28 9 chr4 22882416 22882631 -179445716 - MER20 DNA MER1_type 0 219 1 347 242 205 42 chr4 22882697 22882792 -179445555 - MIR SINE MIR -4 258 180 2181 180 49 12 chr4 22882792 22883203 -179445144 + MSTB LTR MaLR 1 426 0 347 242 205 42 chr4 22883203 22883297 -179445050 - MIR SINE MIR -82 180 38 234 311 40 0 chr4 22883391 22883465 -179444882 + MIR3 SINE MIR 129 205 -3 201 108 0 0 chr4 22885561 22885598 -179442749 + (A)n Simple_repeat Simple_repeat 1 37 0 264 253 71 101 chr4 22887315 22887513 -179440834 - MLT1C LTR MaLR -270 197 6 523 288 196 14 chr4 22887555 22887933 -179440414 - L2 LINE L2 -154 3159 2719 358 325 148 39 chr4 22888134 22888439 -179439908 + L2 LINE L2 2935 3272 0 193 324 15 0 chr4 22889849 22889917 -179438430 - MIR SINE MIR -65 143 75 2175 128 3 0 chr4 22890163 22890468 -179437879 + AluSq SINE Alu 1 306 -7 339 271 50 29 chr4 22890527 22890667 -179437680 + MER103 DNA DNA 24 166 0 2170 117 0 0 chr4 22891736 22892049 -179436298 + AluSx SINE Alu 3 315 0 390 338 102 13 chr4 22892520 22892745 -179435602 + MIR SINE MIR 5 249 -13 22 0 0 0 chr4 22892750 22892772 -179435575 + AT_rich Low_complexity Low_complexity 1 22 0 207 320 39 0 chr4 22892780 22892858 -179435489 - MIR3 SINE MIR -19 189 109 233 382 10 10 chr4 22893242 22893344 -179435003 - MIR SINE MIR -62 146 45 275 331 115 22 chr4 22895417 22895556 -179432791 + MLT1K LTR MaLR 124 275 -313 2228 175 21 16 chr4 22898138 22898567 -179429780 - MSTB1 LTR MaLR 0 432 2 1380 239 32 27 chr4 22898624 22898996 -179429351 - MLT1A2 LTR MaLR 0 374 1 285 382 55 48 chr4 22899195 22899650 -179428697 - L2 LINE L2 -8 3264 2807 2164 138 122 8 chr4 22899816 22900200 -179428147 + MSTA LTR MaLR 1 428 0 209 219 14 0 chr4 22900739 22900812 -179427535 + (TA)n Simple_repeat Simple_repeat 2 75 0 1213 186 0 14 chr4 22901702 22901906 -179426441 + MLT1C LTR MaLR 24 224 -243 1883 166 78 28 chr4 22901906 22902435 -179425912 + MLT2A2 LTR ERVL 3 554 0 1178 219 4 27 chr4 22902435 22902691 -179425656 + MLT1C LTR MaLR 218 467 0 252 0 0 0 chr4 22902759 22902787 -179425560 + (A)n Simple_repeat Simple_repeat 1 28 0 252 0 0 0 chr4 22903735 22903763 -179424584 + (A)n Simple_repeat Simple_repeat 1 28 0 368 261 78 33 chr4 22904155 22904308 -179424039 - LTR33A LTR ERVL -42 481 322 206 191 24 0 chr4 22905225 22905267 -179423080 + (TTA)n Simple_repeat Simple_repeat 3 45 0 583 308 71 12 chr4 22905268 22905508 -179422839 - MIR SINE MIR -1 261 8 223 306 104 30 chr4 22906352 22906486 -179421861 - MIR SINE MIR -31 231 88 1882 148 21 3 chr4 22907131 22907422 -179420925 - AluSx SINE Alu -14 298 3 213 333 0 12 chr4 22907606 22907687 -179420660 + (TAG)n Simple_repeat Simple_repeat 1 80 0 371 262 48 24 chr4 22907700 22907826 -179420521 - MIR SINE MIR -15 247 119 325 264 71 20 chr4 22907932 22908129 -179420218 - L1M4 LINE L1 -2967 3179 2973 504 227 86 15 chr4 22908424 22908582 -179419765 + HsTC2 DNA Tc2 1228 1566 -332 286 284 43 0 chr4 22908583 22908699 -179419648 + HsTC2 DNA Tc2 1775 1895 -3 345 296 92 28 chr4 22908708 22908972 -179419375 - L1M4 LINE L1 -3181 2965 2686 259 203 27 0 chr4 22909984 22910058 -179418289 + CT-rich Low_complexity Low_complexity 3 78 0 22 56 0 0 chr4 22910302 22910338 -179418009 + AT_rich Low_complexity Low_complexity 1 36 0 443 253 76 102 chr4 22910364 22910589 -179417758 + MLT1J2 LTR MaLR 210 432 -18 2029 129 0 3 chr4 22911847 22912156 -179416191 + AluSq SINE Alu 1 308 0 192 383 9 9 chr4 22912160 22912267 -179416080 + L2 LINE L2 2892 2998 -274 2437 75 3 0 chr4 22912549 22912855 -179415492 + AluSg SINE Alu 1 307 -3 22 0 0 0 chr4 22913042 22913064 -179415283 + AT_rich Low_complexity Low_complexity 1 22 0 235 375 102 5 chr4 22914686 22914902 -179413445 - MIR SINE MIR -6 256 20 396 311 52 40 chr4 22915969 22916198 -179412149 + MIR SINE MIR 38 262 0 479 216 13 173 chr4 22916355 22916504 -179411843 - MER112 DNA MER1_type -7 253 174 765 61 0 0 chr4 22916504 22916603 -179411744 + (GAATG)n Simple_repeat Simple_repeat 2 100 0 479 216 13 173 chr4 22916603 22916754 -179411593 - MER112 DNA MER1_type -86 174 1 705 307 27 9 chr4 22917764 22917989 -179410358 + MIR SINE MIR 32 260 -2 240 235 29 15 chr4 22918465 22918533 -179409814 + L2 LINE L2 3198 3266 -6 281 325 107 12 chr4 22919094 22919263 -179409084 - MIR SINE MIR -76 186 2 396 313 95 21 chr4 22919606 22919849 -179408498 - MIR SINE MIR 0 262 2 23 33 0 0 chr4 22919932 22919962 -179408385 + AT_rich Low_complexity Low_complexity 1 30 0 291 301 98 22 chr4 22920684 22920867 -179407480 + L2 LINE L2 3112 3308 -5 188 304 107 65 chr4 22921688 22921856 -179406491 + MIR SINE MIR 32 206 -56 186 71 0 0 chr4 22922049 22922077 -179406270 + (CAA)n Simple_repeat Simple_repeat 2 29 0 227 269 0 0 chr4 22922079 22922131 -179406216 - MIR SINE MIR 0 262 211 796 310 22 50 chr4 22922286 22922650 -179405697 - L3 LINE CR1 -9 1568 1215 21 57 0 0 chr4 22922673 22922708 -179405639 + AT_rich Low_complexity Low_complexity 1 35 0 351 0 0 0 chr4 22923655 22923694 -179404653 + (TA)n Simple_repeat Simple_repeat 1 39 0 225 154 31 62 chr4 22923694 22923759 -179404588 - L1MC4 LINE L1 -1339 6703 6641 279 242 0 22 chr4 22923773 22923864 -179404483 + L1MC4 LINE L1 6615 6703 -1339 211 276 17 0 chr4 22923890 22923948 -179404399 - L2 LINE L2 -213 3059 3001 247 353 83 29 chr4 22924170 22924374 -179403973 + L2 LINE L2 3098 3312 -1 605 259 14 0 chr4 22924857 22924996 -179403351 - MER45A DNA AcHobo -34 144 4 274 281 0 0 chr4 22925016 22925080 -179403267 + GA-rich Low_complexity Low_complexity 3 66 0 336 345 89 54 chr4 22925345 22925771 -179402576 + L3 LINE CR1 977 1417 -160 216 0 0 0 chr4 22925846 22925870 -179402477 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 850 216 107 20 chr4 22925893 22926240 -179402107 + LTR37A LTR ERV1 50 426 0 279 333 29 9 chr4 22926254 22926359 -179401988 + L3 LINE CR1 1454 1560 -17 354 23 0 0 chr4 22927592 22927635 -179400712 + (TG)n Simple_repeat Simple_repeat 2 44 0 208 299 144 10 chr4 22928942 22929039 -179399308 + MIR SINE MIR 140 249 -13 466 103 0 0 chr4 22929384 22929452 -179398895 - MADE1 DNA Mariner 0 80 13 4462 69 5 2 chr4 22929472 22930049 -179398298 - L1PA8 LINE L1 -8 6164 5586 984 273 52 17 chr4 22930156 22930500 -179397847 - Charlie1b DNA MER1_type -167 356 1 216 0 0 0 chr4 22930584 22930608 -179397739 + (A)n Simple_repeat Simple_repeat 1 24 0 324 314 25 25 chr4 22930789 22930907 -179397440 - MIR3 SINE MIR -6 202 85 7258 19 0 1 chr4 22931819 22932660 -179395687 + L1PA2 LINE L1 5312 6151 -4 344 304 26 9 chr4 22933399 22933514 -179394833 + MER8 DNA MER2_type 1 117 -122 276 274 85 114 chr4 22933516 22933717 -179394630 - MIR SINE MIR -16 246 52 617 295 8 60 chr4 22933740 22933857 -179394490 - MIR SINE MIR -24 238 139 2044 136 0 13 chr4 22933857 22934165 -179394182 + AluSq SINE Alu 1 304 -9 617 295 8 60 chr4 22934165 22934298 -179394049 - MIR SINE MIR -123 139 1 21 57 0 0 chr4 22935795 22935830 -179392517 + AT_rich Low_complexity Low_complexity 1 35 0 1084 215 152 4 chr4 22936184 22936421 -179391926 - ERVL LTR ERVL -3585 2179 1908 * 2895 210 42 11 chr4 22936410 22936969 -179391378 - ERVL LTR ERVL -4010 1754 1173 267 31 0 0 chr4 22936969 22937001 -179391346 + (CCAA)n Simple_repeat Simple_repeat 4 35 0 2895 210 42 11 chr4 22937001 22937065 -179391282 - ERVL LTR ERVL -4591 1173 1112 * 8969 184 42 10 chr4 22937054 22938700 -179389647 + ERVL-D LTR ERVL 3003 4701 -1063 6127 186 32 16 chr4 22938698 22939871 -179388476 + ERVL-D LTR ERVL 4566 5757 -7 * 1786 211 37 14 chr4 22939873 22940225 -179388122 + MLT2D LTR ERVL 3 425 -39 528 59 59 0 chr4 22940225 22940327 -179388020 + (TAGA)n Simple_repeat Simple_repeat 3 110 0 1786 211 37 14 chr4 22940327 22940341 -179388006 + MLT2D LTR ERVL 425 437 -27 742 276 41 0 chr4 22941551 22941747 -179386600 - MIR SINE MIR -52 210 7 197 288 0 27 chr4 22942389 22942462 -179385885 + L2 LINE L2 3018 3088 -184 24 67 0 0 chr4 22943487 22943532 -179384815 + AT_rich Low_complexity Low_complexity 1 45 0 867 141 14 0 chr4 22944351 22944493 -179383854 - L1P3 LINE L1 -582 5572 5429 421 79 0 16 chr4 22944490 22944553 -179383794 + L1P LINE L1 5363 5424 -730 * 182 65 65 0 chr4 22945359 22945390 -179382957 + A-rich Low_complexity Low_complexity 2 34 0 2135 135 33 30 chr4 22945859 22946222 -179382125 + THE1B LTR MaLR 1 364 0 202 296 74 12 chr4 22946962 22947043 -179381304 - MIR SINE MIR -85 177 92 1004 186 62 19 chr4 22947124 22947334 -179381013 - MER58A DNA MER1_type -4 220 2 22 80 0 0 chr4 22948099 22948149 -179380198 + AT_rich Low_complexity Low_complexity 1 50 0 265 308 0 0 chr4 22948244 22948322 -179380025 - MIR SINE MIR 0 262 185 365 312 16 40 chr4 22948697 22948822 -179379525 - MER5A DNA MER1_type -67 122 1 1170 190 56 7 chr4 22949139 22949408 -179378939 - L1MA4 LINE L1 -4 6296 6015 661 306 73 7 chr4 22950219 22950749 -179377598 + L2 LINE L2 2574 3139 -174 462 363 57 60 chr4 22950845 22951195 -179377152 + L2 LINE L2 2924 3272 0 228 184 13 26 chr4 22952132 22952208 -179376139 + GA-rich Low_complexity Low_complexity 1 75 0 22 35 0 0 chr4 22952700 22952729 -179375618 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 22952904 22952932 -179375415 + AT_rich Low_complexity Low_complexity 1 28 0 313 307 27 67 chr4 22953075 22953225 -179375122 - MIR SINE MIR -86 176 33 2363 76 3 0 chr4 22954266 22954556 -179373791 - AluSx SINE Alu -20 292 2 1267 246 77 31 chr4 22955165 22955350 -179372997 - MLT1D LTR MaLR -3 502 327 1616 119 5 0 chr4 22955350 22955606 -179372741 - AluSg/x SINE Alu 0 321 65 1267 246 77 31 chr4 22955606 22955899 -179372448 - MLT1D LTR MaLR -178 327 1 732 267 84 18 chr4 22955899 22956124 -179372223 + MIR SINE MIR 11 250 -12 635 227 16 7 chr4 22956935 22957102 -179371245 - MLT1E2 LTR MaLR -13 611 442 260 229 48 67 chr4 22957266 22957371 -179370976 - MIR SINE MIR -10 252 150 1522 185 24 80 chr4 22957636 22958047 -179370300 - MLT1B LTR MaLR -2 388 1 2091 177 14 0 chr4 22958165 22958311 -179370036 - THE1C LTR MaLR -2 373 230 3852 56 4 2 chr4 22958311 22958796 -179369551 - L1PA7 LINE L1 0 6154 5669 2091 177 14 0 chr4 22958796 22959017 -179369330 - THE1C LTR MaLR -145 230 1 231 114 0 0 chr4 22959121 22959165 -179369182 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 628 226 0 0 chr4 22959829 22959944 -179368403 + FLAM_A SINE Alu 9 123 -19 1889 196 107 35 chr4 22960648 22961132 -179367215 + MLT1F LTR MaLR 24 542 0 1665 146 30 43 chr4 22961349 22961651 -179366696 + AluSx SINE Alu 1 298 -14 206 81 27 0 chr4 22961965 22962002 -179366345 + (TA)n Simple_repeat Simple_repeat 1 38 0 184 87 0 43 chr4 22962067 22962113 -179366234 + (TTAAA)n Simple_repeat Simple_repeat 3 46 0 220 202 20 61 chr4 22962126 22962225 -179366122 + (TA)n Simple_repeat Simple_repeat 1 95 0 240 221 0 87 chr4 22962589 22962716 -179365631 + GA-rich Low_complexity Low_complexity 1 116 0 2400 67 3 22 chr4 22962749 22963065 -179365282 + AluY SINE Alu 1 310 -1 1437 301 83 32 chr4 22963172 22963981 -179364366 + L2 LINE L2 2379 3284 -29 1401 227 70 55 chr4 22963981 22964439 -179363908 - MLT1C LTR MaLR -2 465 1 1437 301 83 32 chr4 22964439 22964471 -179363876 + L2 LINE L2 3284 3313 0 284 125 0 18 chr4 22965850 22965906 -179362441 + (TC)n Simple_repeat Simple_repeat 2 56 0 2338 83 0 3 chr4 22965939 22966251 -179362096 - AluY SINE Alu 0 311 1 262 358 40 55 chr4 22967009 22967210 -179361137 - L2 LINE L2 -5 3267 3070 240 314 29 39 chr4 22967223 22967325 -179361022 + MIR SINE MIR 83 183 -79 1694 170 39 3 chr4 22967539 22967821 -179360526 + AluJb SINE Alu 1 292 -20 1667 178 28 14 chr4 22968689 22968976 -179359371 - AluJb SINE Alu -21 291 1 21 36 0 0 chr4 22969716 22969744 -179358603 + AT_rich Low_complexity Low_complexity 1 28 0 24 96 0 0 chr4 22969952 22970025 -179358322 + AT_rich Low_complexity Low_complexity 1 73 0 198 315 36 81 chr4 22970676 22970787 -179357560 + L2 LINE L2 3205 3310 -3 400 309 63 31 chr4 22971405 22971596 -179356751 + MIR SINE MIR 2 198 -64 26 0 0 0 chr4 22972401 22972427 -179355920 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr4 22972466 22972486 -179355861 + (ATG)n Simple_repeat Simple_repeat 2 21 0 301 287 10 10 chr4 22972522 22972623 -179355724 + MIR SINE MIR 101 201 -61 783 209 39 0 chr4 22973282 22973464 -179354883 + MER53 DNA DNA 1 189 0 1608 188 7 82 chr4 22973522 22973926 -179354421 + MLT1A2 LTR MaLR 1 374 0 188 207 103 52 chr4 22975826 22975884 -179352463 + MIR SINE MIR 2 62 -200 627 139 0 0 chr4 22977158 22977259 -179351088 - AluJb SINE Alu -1 311 211 337 296 68 12 chr4 22977931 22978093 -179350254 + L2 LINE L2 3143 3313 0 1784 116 20 58 chr4 22979055 22979349 -179348998 - AluSq SINE Alu -30 283 1 201 336 62 26 chr4 22979937 22980050 -179348297 - MIR SINE MIR -80 182 66 491 376 15 18 chr4 22980068 22980342 -179348005 + MLT1J1 LTR MaLR 1 273 -173 1630 232 58 12 chr4 22980464 22980964 -179347383 - Charlie1b DNA MER1_type 0 523 1 207 0 0 0 chr4 22981048 22981071 -179347276 + (A)n Simple_repeat Simple_repeat 1 23 0 255 322 34 34 chr4 22981253 22981371 -179346976 - MIR3 SINE MIR -6 202 85 202 273 0 18 chr4 22981849 22981904 -179346443 + L3 LINE CR1 1409 1462 -115 1899 234 153 93 chr4 22982975 22983590 -179344757 - MLT1E3 LTR MaLR -2 622 1 325 325 0 0 chr4 22984091 22984174 -179344173 + MIR SINE MIR 29 111 -151 196 175 32 0 chr4 22984197 22984260 -179344087 + (TA)n Simple_repeat Simple_repeat 2 66 0 473 313 91 14 chr4 22985547 22985755 -179342592 + MIR SINE MIR 7 230 -32 489 305 115 40 chr4 22985976 22986202 -179342145 - MIR SINE MIR 0 262 20 313 361 42 42 chr4 22986659 22986803 -179341544 + MER91A DNA MER1_type 28 171 -25 285 313 50 0 chr4 22986887 22986967 -179341380 + L2 LINE L2 3174 3257 -15 2507 68 0 3 chr4 22986980 22987288 -179341059 + AluY SINE Alu 1 307 -4 194 256 0 0 chr4 22988052 22988095 -179340252 + L2 LINE L2 3269 3311 -2 2580 182 9 6 chr4 22988327 22988793 -179339554 - MLT1C LTR MaLR 0 467 1 233 261 49 103 chr4 22989232 22989416 -179338931 + L2 LINE L2 2903 3076 -196 209 257 218 0 chr4 22989765 22989866 -179338481 + MIR SINE MIR 119 241 -21 2305 95 0 0 chr4 22990180 22990476 -179337871 - AluSc SINE Alu -13 296 1 261 0 0 0 chr4 22990717 22990746 -179337601 + (CACAT)n Simple_repeat Simple_repeat 2 30 0 1991 117 46 0 chr4 22990758 22991039 -179337308 - AluSg SINE Alu -16 294 1 189 277 138 21 chr4 22991147 22991241 -179337106 + MIR3 SINE MIR 101 205 -3 211 301 106 26 chr4 22992082 22992195 -179336152 + MIR3 SINE MIR 42 163 -45 2951 160 198 49 chr4 22993184 22993903 -179334444 + LTR1B LTR ERV1 1 826 0 231 320 31 31 chr4 22996168 22996265 -179332082 - MIR SINE MIR -119 143 47 2020 130 3 16 chr4 22996278 22996586 -179331761 - AluSx SINE Alu -7 305 2 357 358 16 0 chr4 22996902 22997025 -179331322 + MIR SINE MIR 6 130 -132 309 273 91 32 chr4 22997306 22997460 -179330887 + MIR SINE MIR 87 249 -13 2868 62 10 13 chr4 23000313 23000697 -179327650 + L1PA8A LINE L1 5736 6118 -13 455 254 149 0 chr4 23000729 23000930 -179327417 + Charlie7 DNA MER1_type 2125 2355 -257 22 0 0 0 chr4 23001125 23001147 -179327200 + AT_rich Low_complexity Low_complexity 1 22 0 347 185 62 0 chr4 23001186 23001251 -179327096 + Tigger2 DNA MER2_type 1 69 -2649 * 1031 174 42 14 chr4 23001241 23001454 -179326893 + Tigger2 DNA MER2_type 2273 2491 -227 225 132 0 0 chr4 23001454 23001492 -179326855 + (TCCC)n Simple_repeat Simple_repeat 1 38 0 1296 173 114 0 chr4 23001500 23001737 -179326610 - AluJo SINE Alu -48 264 1 1274 181 17 0 chr4 23001737 23001969 -179326378 + Tigger2 DNA MER2_type 2483 2718 0 3036 14 0 0 chr4 23002573 23002920 -179325427 + L1PA2 LINE L1 5806 6152 -3 2440 45 0 3 chr4 23003003 23003294 -179325053 - AluY SINE Alu -21 290 1 24 0 0 0 chr4 23003302 23003326 -179325021 + AT_rich Low_complexity Low_complexity 1 24 0 1493 92 0 10 chr4 23004427 23004634 -179323713 + L1PA7 LINE L1 5949 6153 -1 183 327 0 0 chr4 23004646 23004701 -179323646 + MIR SINE MIR 58 112 -150 * 250 321 62 9 chr4 23004690 23004802 -179323545 + MIR SINE MIR 59 176 -86 1321 234 123 37 chr4 23005017 23005489 -179322858 - MLT1F LTR MaLR 0 555 34 32 43 0 0 chr4 23005809 23005855 -179322492 + AT_rich Low_complexity Low_complexity 1 46 0 29 84 0 0 chr4 23007192 23007263 -179321084 + AT_rich Low_complexity Low_complexity 1 71 0 4155 105 12 2 chr4 23007324 23007926 -179320421 + L1MA1 LINE L1 5684 6291 -11 335 352 40 8 chr4 23008002 23008249 -179320098 + MER113 DNA MER1_type? 259 513 -8 2077 128 0 7 chr4 23010092 23010390 -179317957 - AluSx SINE Alu -16 296 1 792 494 83 0 chr4 23010422 23010734 -179317613 - MER58B DNA MER1_type -3 338 1 925 317 69 30 chr4 23010748 23011096 -179317251 + L2 LINE L2 2720 3097 -216 1800 186 2 63 chr4 23011096 23011511 -179316836 + MLT1B LTR MaLR 1 390 0 925 317 69 30 chr4 23011511 23011737 -179316610 + L2 LINE L2 3097 3313 0 14454 141 27 6 chr4 23011977 23013376 -179314971 - Tigger1 DNA MER2_type -3 2415 1047 1624 149 3 96 chr4 23013376 23013711 -179314636 - AluJo SINE Alu -8 304 1 14454 141 27 6 chr4 23013711 23013949 -179314398 - Tigger1 DNA MER2_type -1371 1047 816 2216 156 50 35 chr4 23013949 23014181 -179314166 - MSTA LTR MaLR 0 428 186 1866 177 0 13 chr4 23014181 23014497 -179313850 - AluSx SINE Alu 0 312 1 2216 156 50 35 chr4 23014497 23014686 -179313661 - MSTA LTR MaLR -242 186 1 14454 141 27 6 chr4 23014686 23015412 -179312935 - Tigger1 DNA MER2_type -1602 816 1 197 202 110 55 chr4 23015559 23015668 -179312679 - MIR SINE MIR 0 262 148 1135 124 54 0 chr4 23015768 23015953 -179312394 + L1PA14 LINE L1 5966 6160 -1 21 57 0 0 chr4 23016230 23016265 -179312082 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 23016317 23016345 -179312002 + AT_rich Low_complexity Low_complexity 1 28 0 1621 53 0 5 chr4 23016497 23016703 -179311644 - L1PA5 LINE L1 -8 6146 5942 231 67 0 0 chr4 23016703 23016733 -179311614 + L1PA5 LINE L1 5920 5949 -205 241 403 13 13 chr4 23017170 23017319 -179311028 - MIR3 SINE MIR -58 150 2 333 284 47 39 chr4 23017395 23017522 -179310825 + MIR3 SINE MIR 73 200 -8 24 100 0 0 chr4 23018237 23018317 -179310030 + AT_rich Low_complexity Low_complexity 1 80 0 4675 8 0 0 chr4 23018626 23019153 -179309194 + L1PA2 LINE L1 5629 6155 0 205 372 100 17 chr4 23019271 23019451 -179308896 - L2 LINE L2 -9 3304 3110 424 263 0 0 chr4 23019453 23019552 -179308795 - MER94 DNA DNA -15 119 21 229 279 93 0 chr4 23019585 23019671 -179308676 - L2 LINE L2 -212 3101 3008 1141 186 13 9 chr4 23020012 23020243 -179308104 + MER46A DNA MER2_type 3 234 -2 239 296 0 0 chr4 23020921 23020975 -179307372 + L2 LINE L2 3219 3272 0 222 293 50 40 chr4 23021220 23021319 -179307028 - MIR SINE MIR -115 147 48 399 151 32 0 chr4 23021904 23021997 -179306350 + (TA)n Simple_repeat Simple_repeat 2 97 0 2343 133 73 2 chr4 23022145 23022543 -179305804 + MSTB LTR MaLR 1 426 0 483 326 61 13 chr4 23023003 23023233 -179305114 + LTR33 LTR ERVL 107 347 -174 2138 124 3 3 chr4 23023512 23023818 -179304529 - AluSg SINE Alu -4 306 1 207 0 0 0 chr4 23024647 23024670 -179303677 + (T)n Simple_repeat Simple_repeat 1 23 0 276 331 32 16 chr4 23024924 23025048 -179303299 - LTR33 LTR ERVL -244 277 152 25 0 0 0 chr4 23025073 23025098 -179303249 + AT_rich Low_complexity Low_complexity 1 25 0 2178 94 0 7 chr4 23025098 23025406 -179302941 + AluSx SINE Alu 1 306 0 26 50 0 0 chr4 23026419 23026459 -179301888 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 23026651 23026672 -179301675 + AT_rich Low_complexity Low_complexity 1 21 0 217 132 0 0 chr4 23026734 23026772 -179301575 + (TAAAAA)n Simple_repeat Simple_repeat 3 40 0 225 0 0 0 chr4 23029136 23029161 -179299186 + (A)n Simple_repeat Simple_repeat 1 25 0 207 0 0 0 chr4 23029303 23029326 -179299021 + (TAA)n Simple_repeat Simple_repeat 2 24 0 903 346 98 13 chr4 23031081 23031904 -179296443 - L2 LINE L2 0 3313 2418 2775 159 17 26 chr4 23031930 23032713 -179295634 - L1MA7 LINE L1 -657 5634 4857 3274 167 18 23 chr4 23032713 23033376 -179294971 + L1MA7 LINE L1 5632 6291 0 2170 121 3 0 chr4 23033518 23033823 -179294524 - AluSx SINE Alu -6 306 1 1476 217 16 36 chr4 23033904 23034268 -179294079 - MLT1A2 LTR MaLR -14 360 4 4932 222 37 56 chr4 23034312 23035192 -179293155 + L1MD1 LINE L1 3385 4280 -1962 320 64 0 0 chr4 23035192 23035239 -179293108 - L1PA2 LINE L1 0 6155 6109 4932 222 37 56 chr4 23035239 23037269 -179291078 + L1MD1 LINE L1 4280 6235 -7 376 331 38 17 chr4 23037290 23037567 -179290780 - L2 LINE L2 -9 3304 2975 393 22 0 0 chr4 23039742 23039788 -179288559 + (CA)n Simple_repeat Simple_repeat 2 47 0 388 313 17 17 chr4 23040121 23040236 -179288111 + MER5A DNA MER1_type 7 121 -68 253 281 216 14 chr4 23042451 23042590 -179285757 + MIR3 SINE MIR 1 167 -41 364 283 0 9 chr4 23042667 23042780 -179285567 - L1MC/D LINE L1 -2019 5789 5678 2258 107 0 31 chr4 23043011 23043328 -179285019 + AluSc SINE Alu 1 307 -2 388 320 72 17 chr4 23043669 23043850 -179284497 - MIR SINE MIR -62 200 10 416 271 24 41 chr4 23044843 23045033 -179283314 + MIR SINE MIR 37 216 -46 1806 140 10 10 chr4 23045288 23045602 -179282745 - L1MA4A LINE L1 -9 6294 5981 399 289 28 33 chr4 23046231 23046411 -179281936 + GA-rich Low_complexity Low_complexity 2 180 0 1620 0 0 0 chr4 23046606 23046869 -179281478 + (TTTTA)n Simple_repeat Simple_repeat 1 263 0 901 96 0 0 chr4 23046869 23047067 -179281280 - AluY SINE Alu 0 355 158 1598 87 5 0 chr4 23047067 23047274 -179281073 - AluY SINE Alu -103 208 1 1876 135 7 16 chr4 23048073 23048377 -179279970 - AluSx SINE Alu -8 304 4 944 200 68 10 chr4 23048921 23049126 -179279221 - MER20 DNA MER1_type -1 218 2 350 165 0 51 chr4 23050302 23050381 -179277966 - L1PA10 LINE L1 -3 6165 6091 264 111 0 0 chr4 23050381 23050417 -179277930 + 5S rRNA rRNA 7 42 -79 1972 154 3 3 chr4 23051526 23051920 -179276427 + AluSq SINE Alu 1 394 0 4426 36 25 0 chr4 23052377 23052925 -179275422 - L1PA5 LINE L1 0 6154 5593 320 357 18 9 chr4 23053019 23053131 -179275216 + MIR SINE MIR 1 113 -149 223 343 37 46 chr4 23056078 23056186 -179272161 + MIR SINE MIR 16 122 -140 243 300 29 0 chr4 23057616 23057686 -179270661 + L2 LINE L2 3226 3297 -16 23 33 0 0 chr4 23057686 23057716 -179270631 + AT_rich Low_complexity Low_complexity 1 30 0 334 382 76 0 chr4 23058518 23058675 -179269672 + L2 LINE L2 3104 3272 0 861 241 48 66 chr4 23058945 23059364 -179268983 + MLT1A1 LTR MaLR 4 365 0 1985 160 0 0 chr4 23059392 23059680 -179268667 + AluSx SINE Alu 1 288 -24 1923 277 173 10 chr4 23059801 23060785 -179267562 + L2 LINE L2 1993 3129 -184 186 286 60 12 chr4 23060907 23060991 -179267356 + L2 LINE L2 3182 3269 -44 21 36 0 0 chr4 23061587 23061615 -179266732 + AT_rich Low_complexity Low_complexity 1 28 0 397 257 29 0 chr4 23061851 23061956 -179266391 - L1MEc LINE L1 -6223 173 66 22 56 0 0 chr4 23061998 23062034 -179266313 + AT_rich Low_complexity Low_complexity 1 36 0 305 330 48 43 chr4 23062593 23062676 -179265671 - L3 LINE CR1 -3 1574 1493 1788 177 0 7 chr4 23062676 23062976 -179265371 + AluJb SINE Alu 1 298 -14 305 330 48 43 chr4 23062976 23063101 -179265246 - L3 LINE CR1 -84 1493 1365 32 26 0 0 chr4 23063852 23063891 -179264456 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr4 23063962 23063990 -179264357 + AT_rich Low_complexity Low_complexity 1 28 0 422 95 21 44 chr4 23065037 23065127 -179263220 + LTR41 LTR ERVL 688 795 0 361 257 40 159 chr4 23066853 23067070 -179261277 - L2 LINE L2 0 3272 3093 1595 239 7 38 chr4 23067070 23067517 -179260830 - MER63B DNA MER1_type -3 433 1 361 257 40 159 chr4 23067517 23067575 -179260772 - L2 LINE L2 -179 3093 3030 613 302 73 58 chr4 23067725 23068106 -179260241 + MLT1I LTR MaLR 11 397 -12 24 32 0 0 chr4 23068581 23068612 -179259735 + AT_rich Low_complexity Low_complexity 1 31 0 364 21 0 0 chr4 23068829 23068876 -179259471 + L1PA3 LINE L1 6109 6155 0 210 370 109 8 chr4 23068890 23069009 -179259338 - MIR3 SINE MIR -45 163 33 300 374 27 21 chr4 23069276 23069463 -179258884 - MIR3 SINE MIR -9 199 12 1984 114 7 35 chr4 23069647 23069983 -179258364 + AluY SINE Alu 1 328 0 24 85 0 0 chr4 23071146 23071205 -179257142 + AT_rich Low_complexity Low_complexity 1 59 0 221 274 0 15 chr4 23071920 23072055 -179256292 + (CATATA)n Simple_repeat Simple_repeat 2 134 0 242 191 0 16 chr4 23072172 23072235 -179256112 + CT-rich Low_complexity Low_complexity 1 62 0 270 349 54 12 chr4 23072267 23072433 -179255914 - L2 LINE L2 0 3313 3141 227 336 64 7 chr4 23072489 23072629 -179255718 + MIR SINE MIR 105 252 -10 2144 117 0 0 chr4 23073593 23073907 -179254440 + AluSg SINE Alu 1 314 0 2026 219 46 38 chr4 23074932 23075429 -179252918 - MLT1D LTR MaLR -2 503 3 343 270 0 0 chr4 23076540 23076614 -179251733 + L2 LINE L2 3199 3272 0 488 319 79 63 chr4 23077668 23077740 -179250607 + L1ME4a LINE L1 5265 5334 -787 1902 166 29 16 chr4 23077740 23078125 -179250222 - MLT1B LTR MaLR 0 390 1 488 319 79 63 chr4 23078125 23078683 -179249664 + L1ME4a LINE L1 5334 5905 -216 1218 240 113 28 chr4 23079569 23079994 -179248353 + MLT1C LTR MaLR 7 467 0 2579 183 10 4 chr4 23081761 23082254 -179246093 + Tigger7 DNA MER2_type 1 496 -237 396 247 79 75 chr4 23082988 23083454 -179244893 + L1MC5 LINE L1 7450 7917 -44 1965 133 29 40 chr4 23084027 23084404 -179243943 - THE1C LTR MaLR -2 373 1 233 260 78 13 chr4 23085825 23085902 -179242445 - L2 LINE L2 -43 3270 3189 540 271 132 39 chr4 23086022 23086302 -179242045 + L2 LINE L2 3008 3313 0 294 333 30 10 chr4 23086343 23086442 -179241905 - MIR SINE MIR -67 141 41 1875 125 44 14 chr4 23086700 23086995 -179241352 + AluSx SINE Alu 1 304 -8 220 294 83 28 chr4 23087049 23087158 -179241189 + MIR SINE MIR 98 212 -50 2224 115 0 0 chr4 23088108 23088404 -179239943 + AluSc SINE Alu 1 296 -13 1893 104 4 19 chr4 23088649 23088918 -179239429 + AluSq SINE Alu 1 265 -48 819 101 0 0 chr4 23088930 23089049 -179239298 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 187 317 17 17 chr4 23089322 23089382 -179238965 + MIR SINE MIR 22 81 -181 436 319 56 30 chr4 23089605 23089837 -179238510 + MIR SINE MIR 16 253 -9 505 272 99 71 chr4 23089874 23090168 -179238179 - L2 LINE L2 -2 3311 3010 228 341 95 24 chr4 23090326 23090452 -179237895 + MIR SINE MIR 9 143 -119 448 298 107 6 chr4 23090585 23090666 -179237681 + MIR SINE MIR 65 136 -126 249 33 0 0 chr4 23090666 23090696 -179237651 + (TAA)n Simple_repeat Simple_repeat 3 32 0 448 298 107 6 chr4 23090696 23090792 -179237555 + MIR SINE MIR 136 260 -2 22 35 0 0 chr4 23092462 23092491 -179235856 + AT_rich Low_complexity Low_complexity 1 29 0 331 203 0 0 chr4 23092635 23092694 -179235653 - L2 LINE L2 -4 3309 3251 861 165 0 8 chr4 23092852 23092985 -179235362 - FRAM SINE Alu -24 152 21 22 70 0 0 chr4 23093313 23093356 -179234991 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 23093430 23093451 -179234896 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 23093684 23093712 -179234635 + AT_rich Low_complexity Low_complexity 1 28 0 961 146 152 3 chr4 23093791 23094114 -179234233 - MER33 DNA MER1_type -3 360 5 205 339 0 0 chr4 23094726 23094785 -179233562 + L2 LINE L2 3213 3271 -1 377 277 112 37 chr4 23095283 23095472 -179232875 + MIR SINE MIR 6 212 -50 815 167 15 0 chr4 23096897 23097029 -179231318 - AluJb SINE Alu -16 296 163 605 197 14 48 chr4 23097352 23097499 -179230848 - FLAM_A SINE Alu 0 142 1 192 40 0 0 chr4 23097555 23097580 -179230767 + (A)n Simple_repeat Simple_repeat 1 25 0 416 303 50 40 chr4 23097998 23098196 -179230151 - MIR SINE MIR -52 210 11 204 181 14 153 chr4 23098366 23098438 -179229909 - MIR SINE MIR -74 188 127 564 293 186 51 chr4 23098565 23099238 -179229109 - L2 LINE L2 0 3313 2566 523 329 98 31 chr4 23100653 23101070 -179227277 - L1ME LINE L1 -364 5757 5313 23639 141 16 20 chr4 23101725 23108142 -179220205 - L1PA8A LINE L1 0 6446 3 200 302 54 62 chr4 23108221 23108350 -179219997 + MIR3 SINE MIR 45 172 -36 2094 154 8 46 chr4 23108352 23108516 -179219831 + THE1C LTR MaLR 1 170 -205 1917 139 20 33 chr4 23108516 23108818 -179219529 - AluSx SINE Alu -14 298 1 2094 154 8 46 chr4 23108818 23109043 -179219304 + THE1C LTR MaLR 170 375 0 1805 140 50 30 chr4 23109964 23110264 -179218083 - AluJb SINE Alu 0 312 7 219 100 0 100 chr4 23110516 23110566 -179217781 - MIR SINE MIR 0 262 218 * 477 206 142 64 chr4 23110563 23110704 -179217643 + MIR SINE MIR 30 181 -81 216 0 0 0 chr4 23110753 23110777 -179217570 + (GA)n Simple_repeat Simple_repeat 1 24 0 938 171 93 0 chr4 23111111 23111327 -179217020 + L1MA9 LINE L1 6073 6308 -4 1596 170 3 87 chr4 23111369 23111692 -179216655 + AluJo SINE Alu 7 302 -10 693 291 106 49 chr4 23111803 23112436 -179215911 + HAL1 LINE L1 3 671 -1836 1148 229 99 43 chr4 23112449 23112802 -179215545 - MLT1C LTR MaLR 0 467 83 1674 150 81 36 chr4 23112802 23113161 -179215186 + THE1C LTR MaLR 1 375 0 1148 229 99 43 chr4 23113161 23113249 -179215098 - MLT1C LTR MaLR -384 83 1 2410 188 59 40 chr4 23113249 23114051 -179214296 + L1MEc LINE L1 1929 2650 -3890 1811 225 50 27 chr4 23114065 23114147 -179214200 + L1MD2 LINE L1 5611 5690 -669 1842 175 0 14 chr4 23114147 23114444 -179213903 + AluJb SINE Alu 1 293 -19 1811 225 50 27 chr4 23114444 23114882 -179213465 + L1MD2 LINE L1 5690 6143 -216 377 207 21 29 chr4 23114888 23115028 -179213319 + L1MC4a LINE L1 7668 7806 -2 553 288 91 18 chr4 23115141 23115537 -179212810 + HAL1 LINE L1 1842 2266 -241 1300 135 46 29 chr4 23115703 23116020 -179212327 - THE1C LTR MaLR 0 375 1 2617 196 73 30 chr4 23116892 23117048 -179211299 - L1MB8 LINE L1 0 6178 6030 2072 127 0 3 chr4 23117048 23117369 -179210978 + AluSx SINE Alu 1 320 0 2617 196 73 30 chr4 23117369 23117694 -179210653 - L1MB8 LINE L1 -148 6030 5654 2142 96 0 14 chr4 23117694 23117986 -179210361 - AluSc SINE Alu -21 288 1 2617 196 73 30 chr4 23117986 23118197 -179210150 - L1MB8 LINE L1 -524 5654 5454 2304 65 7 0 chr4 23118312 23118605 -179209742 - AluY SINE Alu -16 295 1 1545 143 102 16 chr4 23118755 23119070 -179209277 + MER46B DNA MER2_type 1 217 -19 182 363 44 22 chr4 23119112 23119203 -179209144 + L2 LINE L2 3003 3095 -177 534 275 123 8 chr4 23119219 23119422 -179208925 - MIR SINE MIR -36 226 3 22 35 0 0 chr4 23119473 23119502 -179208845 + AT_rich Low_complexity Low_complexity 1 29 0 196 372 99 8 chr4 23120254 23120375 -179207972 - L2 LINE L2 0 3272 3141 238 258 8 100 chr4 23120468 23120532 -179207815 - MIR SINE MIR -78 184 134 2252 103 7 3 chr4 23120532 23120834 -179207513 + AluSc SINE Alu 1 303 -6 238 258 8 100 chr4 23120834 23120889 -179207458 - MIR SINE MIR -128 134 76 24 0 0 0 chr4 23122266 23122290 -179206057 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr4 23122713 23122737 -179205610 + (A)n Simple_repeat Simple_repeat 1 24 0 1129 237 23 40 chr4 23122785 23123131 -179205216 - MLT1A1 LTR MaLR 0 365 26 278 268 9 80 chr4 23123378 23123476 -179204871 + MIR SINE MIR 67 158 -104 2469 62 3 0 chr4 23123476 23123765 -179204582 + AluSx SINE Alu 16 305 -7 278 268 9 80 chr4 23123765 23123778 -179204569 + MIR SINE MIR 158 170 -92 308 311 118 0 chr4 23123878 23123997 -179204350 + L2 LINE L2 3136 3268 -4 22 35 0 0 chr4 23124094 23124123 -179204224 + AT_rich Low_complexity Low_complexity 1 29 0 328 259 61 7 chr4 23124147 23124294 -179204053 - MER113 DNA MER1_type? -362 159 5 1944 144 0 27 chr4 23124994 23125293 -179203054 - AluSx SINE Alu -21 291 1 4023 47 22 4 chr4 23125517 23126023 -179202324 + L1PA5 LINE L1 5640 6154 0 678 119 28 0 chr4 23126474 23126583 -179201764 + MLT1B LTR MaLR 279 390 0 22 0 0 0 chr4 23126929 23126951 -179201396 + AT_rich Low_complexity Low_complexity 1 22 0 2024 120 3 7 chr4 23126952 23127235 -179201112 + AluSx SINE Alu 3 284 -28 189 0 0 0 chr4 23128311 23128332 -179200015 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1163 218 51 25 chr4 23128335 23128610 -179199737 - AluJo SINE Alu -30 282 1 22 35 0 0 chr4 23129268 23129297 -179199050 + AT_rich Low_complexity Low_complexity 1 29 0 262 145 26 11 chr4 23129434 23129561 -179198786 + AluJo SINE Alu 5 129 -173 321 26 0 0 chr4 23129561 23129599 -179198748 + (TA)n Simple_repeat Simple_repeat 2 39 0 262 145 26 11 chr4 23129599 23129705 -179198642 + AluJo SINE Alu 129 302 0 347 74 37 0 chr4 23129711 23129765 -179198582 + (GAAA)n Simple_repeat Simple_repeat 4 59 0 728 303 31 13 chr4 23130315 23130543 -179197804 - MIR SINE MIR -13 249 18 785 296 14 0 chr4 23130961 23131181 -179197166 + MER58A DNA MER1_type 1 223 -1 219 321 50 20 chr4 23132235 23132353 -179195994 - MIR SINE MIR -65 143 30 1123 113 0 0 chr4 23132769 23132947 -179195400 - AluSg/x SINE Alu 0 311 134 22 35 0 0 chr4 23133126 23133155 -179195192 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 23133237 23133265 -179195082 + AT_rich Low_complexity Low_complexity 1 28 0 218 250 92 0 chr4 23133454 23133530 -179194817 - MIR SINE MIR -55 207 125 276 341 49 16 chr4 23133656 23133779 -179194568 - MIR SINE MIR -65 143 17 260 365 161 13 chr4 23134343 23134820 -179193527 + L2 LINE L2 2407 2954 -360 186 292 0 56 chr4 23134966 23135038 -179193309 + L2 LINE L2 3172 3239 -74 1665 244 58 60 chr4 23135060 23135596 -179192751 - MER90 LTR ERV1 -6 608 74 479 187 19 19 chr4 23136261 23136368 -179191979 + L1MB8 LINE L1 6067 6173 -5 1771 168 50 6 chr4 23136404 23136743 -179191604 + THE1A LTR MaLR 1 354 -1 278 374 57 0 chr4 23137699 23137822 -179190525 - L2 LINE L2 -4 3268 3139 3359 149 6 11 chr4 23137951 23138480 -179189867 - MER1A DNA MER1_type -1 526 1 21 0 0 0 chr4 23139146 23139167 -179189180 + AT_rich Low_complexity Low_complexity 1 21 0 2313 159 20 34 chr4 23139381 23139821 -179188526 + Tigger2a DNA MER2_type 1 434 0 2778 172 26 26 chr4 23140178 23140685 -179187662 + MLT2B2 LTR ERVL 1 507 -8 184 409 18 0 chr4 23140960 23141070 -179187277 - L2 LINE L2 -19 3294 3183 2444 67 0 0 chr4 23141559 23141859 -179186488 + AluY SINE Alu 1 300 -11 422 356 22 0 chr4 23145102 23145282 -179183065 - MIR SINE MIR -9 253 70 2598 96 31 6 chr4 23145414 23145769 -179182578 + THE1B LTR MaLR 1 364 0 628 194 146 24 chr4 23146268 23146433 -179181914 + MIR SINE MIR 16 200 -62 183 197 213 0 chr4 23146448 23146509 -179181838 + MIR SINE MIR 134 207 -55 870 242 49 14 chr4 23147957 23148180 -179180167 + MIR SINE MIR 32 262 0 5511 89 112 38 chr4 23148313 23149399 -179178948 + MER11A LTR ERVK 1 1266 0 913 228 35 0 chr4 23149628 23149830 -179178517 - MER3 DNA MER1_type 0 209 1 206 0 69 0 chr4 23149992 23150021 -179178326 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 327 315 194 17 chr4 23150300 23150750 -179177597 + L2 LINE L2 2734 3267 -5 251 109 0 0 chr4 23151418 23151464 -179176883 + LTR66 LTR ERVL 394 439 -171 180 0 0 0 chr4 23152854 23152874 -179175473 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 25 31 0 0 chr4 23152914 23152946 -179175401 + AT_rich Low_complexity Low_complexity 1 32 0 2105 114 0 3 chr4 23153839 23154129 -179174218 - AluSg SINE Alu -7 303 15 21 36 0 0 chr4 23154134 23154162 -179174185 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 23154427 23154448 -179173899 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr4 23154521 23154559 -179173788 + AT_rich Low_complexity Low_complexity 1 38 0 235 303 49 56 chr4 23154689 23154831 -179173516 + MER5A DNA MER1_type 48 188 -1 510 275 89 40 chr4 23154957 23155204 -179173143 + MLT1H LTR MaLR 18 276 -273 2838 193 24 60 chr4 23155213 23155927 -179172420 + LTR8 LTR ERV1 4 691 0 702 331 115 24 chr4 23156811 23157319 -179171028 - L2 LINE L2 0 3313 2761 638 313 64 57 chr4 23158784 23159631 -179168716 + L1MEd LINE L1 382 1234 -4885 334 329 86 44 chr4 23159644 23160006 -179168341 + L1MEd LINE L1 1239 1615 -4514 8103 87 5 1 chr4 23160280 23161370 -179166977 - L1P LINE L1 -4847 1299 206 22 0 0 0 chr4 23161552 23161574 -179166773 + AT_rich Low_complexity Low_complexity 1 22 0 345 327 122 5 chr4 23162605 23162810 -179165537 + L2 LINE L2 2831 3059 -213 2153 203 45 61 chr4 23162948 23163976 -179164371 - L1M4 LINE L1 -3350 3032 1999 226 182 0 0 chr4 23163980 23164013 -179164334 + MER2 DNA MER2_type 1 33 -312 363 297 52 61 chr4 23165078 23165290 -179163057 + MER63A DNA MER1_type 1 210 0 7308 119 41 4 chr4 23165417 23166481 -179161866 + THE1-int LTR MaLR 317 1420 -160 30 0 0 0 chr4 23166850 23166880 -179161467 + AT_rich Low_complexity Low_complexity 1 30 0 1195 148 0 0 chr4 23167812 23167994 -179160353 - L1M4c LINE L1 -6184 200 19 1884 199 27 62 chr4 23168503 23169021 -179159326 - MLT1D LTR MaLR -5 500 1 23 0 0 0 chr4 23169298 23169321 -179159026 + AT_rich Low_complexity Low_complexity 1 23 0 282 333 60 18 chr4 23170053 23170221 -179158126 + MARNA DNA Mariner 412 586 0 180 0 0 0 chr4 23170330 23170350 -179157997 + (TTA)n Simple_repeat Simple_repeat 3 22 0 1735 112 0 35 chr4 23170350 23170636 -179157711 - L1PA6 LINE L1 -18 6136 5861 6387 24 0 7 chr4 23170743 23172062 -179156285 + L1PA3 LINE L1 4694 6003 -152 752 214 41 81 chr4 23172218 23172488 -179155859 + MLT2B1 LTR ERVL 229 408 -6 477 317 31 32 chr4 23172685 23173247 -179155100 + L1M4 LINE L1 3796 4424 -1722 11075 44 1 1 chr4 23173427 23174825 -179153522 + L1P LINE L1 2728 4126 -2020 198 0 0 0 chr4 23175262 23175284 -179153063 + (CTAAG)n Simple_repeat Simple_repeat 4 25 0 278 192 82 27 chr4 23175801 23175874 -179152473 + LTR50 LTR ERVL 17 93 -702 342 188 0 0 chr4 23176237 23176306 -179152041 + LTR33A LTR ERVL 422 490 -33 11991 40 16 0 chr4 23176450 23177932 -179150415 + L1P LINE L1 3745 5249 -897 1619 224 57 100 chr4 23178033 23178685 -179149662 + L1MA9 LINE L1 5650 6273 -39 278 50 25 0 chr4 23180630 23180670 -179147677 + (TAA)n Simple_repeat Simple_repeat 2 42 0 521 105 12 0 chr4 23180872 23180958 -179147389 + L1MA6 LINE L1 5553 5639 -661 983 156 6 6 chr4 23181015 23181194 -179147153 + L1MA6 LINE L1 5620 5798 -502 189 107 0 0 chr4 23181201 23181229 -179147118 + (TA)n Simple_repeat Simple_repeat 2 29 0 2670 158 21 12 chr4 23181229 23181743 -179146604 + L1MA6 LINE L1 5781 6299 -1 1375 178 6 81 chr4 23182894 23183215 -179145132 + AluJb SINE Alu 1 297 -15 26 30 0 0 chr4 23183684 23183717 -179144630 + AT_rich Low_complexity Low_complexity 1 33 0 218 254 132 44 chr4 23186881 23186995 -179141352 - MIR SINE MIR -23 239 116 199 257 71 14 chr4 23187110 23187180 -179141167 - MIR SINE MIR -115 147 74 208 118 20 39 chr4 23187180 23187231 -179141116 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 592 185 25 0 chr4 23187534 23187653 -179140694 - L1PA16 LINE L1 -12 6154 6033 1110 223 46 108 chr4 23187915 23188461 -179139886 - MER77 LTR ERV1 -5 600 89 1779 179 51 14 chr4 23188708 23189059 -179139288 - MLT1A1 LTR MaLR -1 364 1 230 221 208 13 chr4 23189127 23189204 -179139143 + MIR SINE MIR 2 93 -169 207 163 47 23 chr4 23189276 23189319 -179139028 + MER5B DNA MER1_type 18 61 -117 237 243 27 0 chr4 23189335 23189409 -179138938 - LTR67 LTR ERVL -7 550 475 202 370 37 37 chr4 23192483 23192618 -179135729 - L2 LINE L2 -1322 1992 1858 3127 266 42 17 chr4 23192720 23194040 -179134307 + L1MC3 LINE L1 3155 4506 -1640 601 221 32 0 chr4 23194029 23194187 -179134160 + L1MC3 LINE L1 5768 5930 -1855 * 1614 208 73 67 chr4 23194200 23194736 -179133611 + L1MC3 LINE L1 6827 7369 -416 183 80 0 0 chr4 23194736 23194761 -179133586 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1614 208 73 67 chr4 23194761 23194864 -179133483 + L1MC3 LINE L1 7369 7470 -315 237 296 0 0 chr4 23194987 23195041 -179133306 - L2 LINE L2 -25 3288 3235 2132 209 58 62 chr4 23195796 23196412 -179131935 - MLT1E2 LTR MaLR -12 614 1 201 245 0 20 chr4 23197222 23197271 -179131076 - MIR SINE MIR -144 64 17 587 303 106 43 chr4 23198135 23198648 -179129699 - L2 LINE L2 -8 3305 2768 451 244 96 7 chr4 23200274 23200409 -179127938 + MLT1A2 LTR MaLR 1 147 -227 2716 212 148 69 chr4 23203230 23204437 -179123910 + L1MC4a LINE L1 6356 7657 -151 188 316 118 0 chr4 23205854 23205930 -179122417 + MIR3 SINE MIR 72 156 -52 360 297 102 0 chr4 23206503 23206621 -179121726 - L2 LINE L2 -38 3275 3146 26 0 0 0 chr4 23206802 23206828 -179121519 + AT_rich Low_complexity Low_complexity 1 26 0 2151 92 4 0 chr4 23206833 23207146 -179121201 + AluSq SINE Alu 1 314 0 1705 200 32 109 chr4 23207273 23207642 -179120705 - MLT1F LTR MaLR 0 542 233 243 61 0 0 chr4 23207642 23207675 -179120672 + (CA)n Simple_repeat Simple_repeat 2 34 0 1705 200 32 109 chr4 23207675 23207890 -179120457 - MLT1F LTR MaLR -309 233 3 234 242 0 0 chr4 23209146 23209208 -179119139 + L1ME2 LINE L1 5803 5864 -302 396 228 35 62 chr4 23209234 23209379 -179118968 + L1ME2 LINE L1 5967 6107 -57 249 324 63 18 chr4 23209729 23209840 -179118507 + MIR SINE MIR 23 138 -70 298 264 28 2 chr4 23210985 23211099 -179117248 - MIR SINE MIR -63 145 38 14084 81 3 5 chr4 23211644 23213623 -179114724 - L1P LINE L1 -4169 1977 2 1853 150 49 0 chr4 23213625 23213971 -179114376 + L1M4c LINE L1 1458 1820 -4564 1040 173 5 16 chr4 23214088 23214273 -179114074 + AluJb SINE Alu 100 282 -30 282 56 0 0 chr4 23214276 23214312 -179114035 + (TA)n Simple_repeat Simple_repeat 2 37 0 1188 234 144 54 chr4 23214314 23214835 -179113512 - MLT1E2 LTR MaLR -71 524 1 259 317 30 0 chr4 23215180 23215281 -179113066 - MIR SINE MIR -21 241 138 2021 110 0 4 chr4 23215659 23215931 -179112416 - AluSx SINE Alu -20 292 22 21 0 0 0 chr4 23216040 23216061 -179112286 + AT_rich Low_complexity Low_complexity 1 21 0 216 306 0 0 chr4 23216186 23216235 -179112112 + L2 LINE L2 3214 3262 -10 1939 157 7 0 chr4 23216309 23216603 -179111744 + AluSx SINE Alu 1 296 -16 359 258 119 25 chr4 23217244 23217403 -179110944 - MIR SINE MIR -66 196 23 1933 297 66 3 chr4 23218601 23219250 -179109097 + MER69 DNA AcHobo 1 690 -536 227 214 83 12 chr4 23219252 23219336 -179109011 + MER69 DNA AcHobo 1769 1858 -668 23489 84 27 12 chr4 23219438 23223039 -179105308 - L1P LINE L1 -1335 4811 1158 991 160 12 0 chr4 23223388 23223557 -179104790 + MER5A DNA MER1_type 14 184 -5 1662 132 0 11 chr4 23223578 23223851 -179104496 + L1MA5 LINE L1 6024 6293 -7 210 309 101 50 chr4 23224065 23224204 -179104143 - L2 LINE L2 -108 3164 3019 370 327 33 33 chr4 23225083 23225297 -179103050 - MIR SINE MIR -34 228 15 633 110 0 0 chr4 23227075 23227166 -179101181 - FRAM SINE Alu -13 163 73 2125 136 0 7 chr4 23227489 23227799 -179100548 + AluSx SINE Alu 1 308 -4 757 227 153 50 chr4 23227806 23228127 -179100220 + MER93b LTR ERV1 20 373 0 22 35 0 0 chr4 23228587 23228616 -179099731 + AT_rich Low_complexity Low_complexity 1 29 0 305 266 7 79 chr4 23228847 23228986 -179099361 - MIR SINE MIR -4 258 130 17766 53 55 2 chr4 23230322 23232762 -179095585 - L1P LINE L1 -3574 2572 2 1491 264 38 13 chr4 23232768 23233219 -179095128 + MER21B LTR ERV1 257 718 -145 1946 184 44 0 chr4 23234665 23235101 -179093246 - L1 LINE L1 -1574 4572 4118 1246 194 8 0 chr4 23235108 23235345 -179093002 - L1MC1 LINE L1 -50 6283 6045 21 82 0 0 chr4 23235346 23235395 -179092952 + AT_rich Low_complexity Low_complexity 1 49 0 606 275 71 63 chr4 23235449 23235845 -179092502 - L1ME LINE L1 -339 5782 5384 239 262 180 70 chr4 23236442 23236698 -179091649 + L2 LINE L2 2040 2323 -991 967 235 53 15 chr4 23236983 23237323 -179091024 - L1ME LINE L1 -1750 4396 4044 192 260 20 0 chr4 23237325 23237375 -179090972 + L2 LINE L2 3220 3270 -2 355 257 194 29 chr4 23237561 23237736 -179090611 - MIR SINE MIR -1 261 58 2195 100 3 0 chr4 23237897 23238196 -179090151 + AluSg SINE Alu 1 300 -10 294 289 62 0 chr4 23238551 23238648 -179089699 + MIR SINE MIR 132 234 -28 237 307 31 16 chr4 23238942 23239069 -179089278 + L1MC/D LINE L1 5707 5835 -286 322 169 36 0 chr4 23239140 23239223 -179089124 + CT-rich Low_complexity Low_complexity 3 88 0 1429 259 204 2 chr4 23239559 23240054 -179088293 + MLT1G1 LTR MaLR 1 595 0 534 303 45 11 chr4 23240250 23240428 -179087919 - MIR SINE MIR -31 231 48 352 170 19 9 chr4 23240864 23240970 -179087377 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 197 343 58 7 chr4 23241978 23242115 -179086232 + L2 LINE L2 2539 2682 -632 478 283 194 5 chr4 23242303 23242494 -179085853 + MLT1H LTR MaLR 1 227 -322 33 43 0 0 chr4 23243450 23243497 -179084850 + AT_rich Low_complexity Low_complexity 1 47 0 317 260 40 0 chr4 23243508 23243608 -179084739 + L1MC4a LINE L1 7354 7457 -351 455 206 69 74 chr4 23243611 23243800 -179084547 + L1MC4 LINE L1 7616 7803 -239 22 0 0 0 chr4 23243928 23243950 -179084397 + AT_rich Low_complexity Low_complexity 1 22 0 370 22 0 0 chr4 23244052 23244098 -179084249 + L1PA4 LINE L1 6012 6057 -98 2143 128 3 0 chr4 23244346 23244642 -179083705 + AluSx SINE Alu 1 297 -15 23737 67 9 0 chr4 23244644 23247896 -179080451 + L1P LINE L1 2 3282 -2864 518 255 80 15 chr4 23248339 23248602 -179079745 + L1M1 LINE L1 3314 3593 -3972 6687 191 35 68 chr4 23248604 23249130 -179079217 + L1M1 LINE L1 3424 3966 -3599 1760 132 21 18 chr4 23249130 23249433 -179078914 + AluSx SINE Alu 1 304 0 6687 191 35 68 chr4 23249433 23251083 -179077264 + L1M1 LINE L1 3966 5532 -2033 22 56 0 0 chr4 23251290 23251326 -179077021 + AT_rich Low_complexity Low_complexity 1 36 0 14443 31 0 0 chr4 23251326 23253820 -179074527 - L1PA3 LINE L1 0 6155 3664 455 271 90 64 chr4 23254030 23254296 -179074051 + L1ME3A LINE L1 5303 5575 -589 327 298 139 7 chr4 23254416 23254718 -179073629 + L1ME3A LINE L1 5610 5951 -219 2476 58 3 0 chr4 23255654 23255947 -179072400 - AluY SINE Alu -9 302 9 291 224 0 0 chr4 23256047 23256123 -179072224 + A-rich Low_complexity Low_complexity 1 76 0 21 0 0 0 chr4 23256554 23256575 -179071772 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr4 23257713 23257772 -179070575 + AT_rich Low_complexity Low_complexity 1 59 0 2008 125 7 10 chr4 23257999 23258287 -179070060 + AluSp SINE Alu 14 300 -13 32 26 0 0 chr4 23259589 23259628 -179068719 + AT_rich Low_complexity Low_complexity 1 39 0 469 369 24 10 chr4 23259778 23259984 -179068363 - L3 LINE CR1 -23 1554 1346 650 204 49 7 chr4 23261361 23261503 -179066844 + MIR SINE MIR 108 255 -7 286 357 36 0 chr4 23261734 23261874 -179066473 - MIR SINE MIR 0 262 118 244 289 0 11 chr4 23261890 23261980 -179066367 + LTR48B LTR ERV1 1 89 -555 683 186 82 52 chr4 23261999 23262230 -179066117 + MER39 LTR ERV1 296 533 -174 1494 200 73 0 chr4 23263692 23264007 -179064340 - MER58B DNA MER1_type -3 338 1 712 247 121 8 chr4 23264886 23265113 -179063234 + MIR SINE MIR 6 262 0 439 332 5 37 chr4 23266818 23267002 -179061345 + MIR SINE MIR 8 188 -65 297 0 0 0 chr4 23267461 23267494 -179060853 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr4 23268191 23268219 -179060128 + AT_rich Low_complexity Low_complexity 1 28 0 249 57 0 0 chr4 23268352 23268387 -179059960 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr4 23268634 23268655 -179059692 + AT_rich Low_complexity Low_complexity 1 21 0 1519 121 59 3 chr4 23268863 23269168 -179059179 + MSTC LTR MaLR 1 416 -12 247 271 57 14 chr4 23269419 23269489 -179058858 - L2 LINE L2 -60 3253 3181 1013 162 14 121 chr4 23269781 23270071 -179058276 + L1PB4 LINE L1 5885 6143 -13 351 0 0 0 chr4 23270511 23270550 -179057797 + (TG)n Simple_repeat Simple_repeat 2 40 0 217 281 74 83 chr4 23270746 23270867 -179057480 - L2 LINE L2 0 3272 3153 188 298 48 0 chr4 23271633 23271717 -179056630 + MIR SINE MIR 96 183 -79 232 367 63 13 chr4 23271873 23272031 -179056316 + MIR3 SINE MIR 41 206 -2 397 164 87 48 chr4 23272061 23272165 -179056182 - MLT1A1 LTR MaLR -253 112 5 406 272 0 10 chr4 23272318 23272421 -179055926 + MIR3 SINE MIR 76 177 -31 243 211 8 154 chr4 23272513 23272636 -179055711 - MER94 DNA DNA -4 130 26 23 0 0 0 chr4 23273731 23273754 -179054593 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 23274095 23274125 -179054222 + AT_rich Low_complexity Low_complexity 1 30 0 196 363 37 57 chr4 23274216 23274516 -179053831 + L2 LINE L2 2365 2658 -656 711 183 0 0 chr4 23274597 23274717 -179053630 + AluSq/x SINE Alu 1 120 -193 202 111 0 28 chr4 23274728 23274764 -179053583 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 4088 34 0 19 chr4 23275543 23276071 -179052276 - L1PA4 LINE L1 -137 6018 5501 184 261 114 87 chr4 23276829 23277013 -179051334 + L2 LINE L2 2132 2320 -994 237 316 109 11 chr4 23278124 23278298 -179050049 + Charlie8 DNA MER1_type 45 235 -2182 3156 187 50 23 chr4 23278407 23279091 -179049256 + MER52A LTR ERV1 404 1105 -650 4709 167 30 0 chr4 23279094 23279920 -179048427 + MER52A LTR ERV1 905 1755 0 1955 46 0 77 chr4 23281015 23281276 -179047071 + AluY SINE Alu 53 293 -18 1433 158 7 52 chr4 23281387 23281659 -179046688 + AluJo SINE Alu 5 264 -48 226 293 9 38 chr4 23282499 23282605 -179045742 - MIR SINE MIR -56 206 104 2366 108 0 0 chr4 23284691 23284996 -179043351 - AluSx SINE Alu -7 305 1 790 303 106 25 chr4 23285867 23285962 -179042385 + L2 LINE L2 2440 2526 -787 1947 105 11 22 chr4 23285962 23286239 -179042108 + AluSx SINE Alu 29 302 -10 790 303 106 25 chr4 23286239 23286776 -179041571 + L2 LINE L2 2526 3125 -188 584 276 77 63 chr4 23286868 23287154 -179041193 - L2 LINE L2 -4 3309 3020 325 171 244 0 chr4 23287154 23287236 -179041111 + L2 LINE L2 3208 3309 -4 2362 52 42 0 chr4 23287254 23287543 -179040804 + AluY SINE Alu 1 301 -10 294 203 0 0 chr4 23289350 23289409 -179038938 + L2 LINE L2 3212 3270 -2 699 320 66 8 chr4 23290152 23290586 -179037761 + LTR33 LTR ERVL 3 490 -31 693 303 54 8 chr4 23290836 23291077 -179037270 - MIR SINE MIR 0 262 11 914 219 53 27 chr4 23291829 23292287 -179036060 - Charlie4a DNA MER1_type -5 503 7 2064 120 3 0 chr4 23292912 23293223 -179035124 + AluSq SINE Alu 1 312 0 1881 132 0 84 chr4 23293884 23294217 -179034130 - AluSx SINE Alu -7 305 1 21 57 0 0 chr4 23294512 23294547 -179033800 + AT_rich Low_complexity Low_complexity 1 35 0 313 187 11 11 chr4 23295356 23295447 -179032900 + GA-rich Low_complexity Low_complexity 5 95 0 2223 106 3 0 chr4 23295545 23295847 -179032500 - AluSq SINE Alu 0 313 11 226 171 14 43 chr4 23295921 23295991 -179032356 + (TA)n Simple_repeat Simple_repeat 2 69 0 2500 65 0 7 chr4 23296777 23297085 -179031262 - AluY SINE Alu -5 306 1 257 160 147 27 chr4 23298333 23298408 -179029939 + L1MA5 LINE L1 6217 6300 0 704 88 18 0 chr4 23299728 23299841 -179028506 + (TAGA)n Simple_repeat Simple_repeat 4 118 0 181 83 56 0 chr4 23299846 23299882 -179028465 + (CATA)n Simple_repeat Simple_repeat 1 38 0 483 302 93 0 chr4 23300446 23300764 -179027583 + LTR43 LTR ERV1 201 453 -59 243 292 77 83 chr4 23300785 23300953 -179027394 + MIR SINE MIR 91 257 -5 414 190 101 0 chr4 23301030 23301109 -179027238 + MER31B LTR ERV1 1 87 -379 1078 69 49 113 chr4 23301120 23301323 -179027024 - L1PA5 LINE L1 -1 6153 5964 2394 38 0 0 chr4 23301324 23301611 -179026736 + L1PA5 LINE L1 5659 5945 -209 844 169 70 0 chr4 23301612 23301784 -179026563 + MER31A LTR ERV1 84 267 -218 1318 245 24 12 chr4 23301892 23302231 -179026116 - MLT1A1 LTR MaLR 0 365 23 357 232 77 65 chr4 23302554 23302709 -179025638 + MIR SINE MIR 95 251 -11 372 328 72 1 chr4 23305155 23305398 -179022949 + L1M2 LINE L1 5327 5583 -729 234 0 0 0 chr4 23305419 23305445 -179022902 + (CA)n Simple_repeat Simple_repeat 2 27 0 228 67 0 0 chr4 23305591 23305621 -179022726 + (GA)n Simple_repeat Simple_repeat 1 30 0 293 213 37 93 chr4 23306802 23306910 -179021437 - MIR SINE MIR -7 255 154 468 273 49 49 chr4 23307007 23307212 -179021135 + L1ME3A LINE L1 5632 5836 -334 400 111 0 0 chr4 23307231 23307285 -179021062 - MLT1A1 LTR MaLR 0 365 312 638 121 0 10 chr4 23307285 23307384 -179020963 + MER4A LTR ERV1 1 98 -566 1972 114 3 23 chr4 23307439 23307738 -179020609 + MER4A LTR ERV1 372 664 0 1503 219 6 6 chr4 23307738 23308049 -179020298 - MLT1A1 LTR MaLR -50 315 5 672 221 123 30 chr4 23308057 23308292 -179020055 + L1ME3A LINE L1 5855 6111 -59 210 143 0 0 chr4 23309695 23309730 -179018617 + (TCC)n Simple_repeat Simple_repeat 3 37 0 1086 144 6 0 chr4 23309872 23310053 -179018294 + L1MA6 LINE L1 6086 6267 -33 1123 204 83 4 chr4 23310068 23310137 -179018210 + AluJo SINE Alu 49 111 -201 387 0 0 0 chr4 23310137 23310180 -179018167 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 1123 204 83 4 chr4 23310180 23310340 -179018007 + AluJo SINE Alu 111 296 -16 1677 170 154 16 chr4 23310530 23310906 -179017441 + MSTA LTR MaLR 1 428 0 1782 203 34 10 chr4 23310907 23311291 -179017056 - MSTD LTR MaLR 0 396 4 607 320 90 50 chr4 23311408 23311958 -179016389 + L2 LINE L2 2712 3294 -19 1050 190 9 0 chr4 23312300 23312516 -179015831 + L1MA9 LINE L1 6095 6312 0 2303 209 24 10 chr4 23312544 23313046 -179015301 + L1MC1 LINE L1 5815 6323 -10 379 228 43 0 chr4 23313082 23313174 -179015173 + L1MB4 LINE L1 6053 6148 -32 320 323 10 10 chr4 23314122 23314218 -179014129 - LTR16A LTR ERVL -295 155 60 2962 166 71 0 chr4 23314643 23315193 -179013154 + LTR51 LTR ERV1 1 589 -82 335 275 17 17 chr4 23315412 23315532 -179012815 - MARNA DNA Mariner -347 239 120 449 257 134 29 chr4 23315612 23315783 -179012564 + MER5A DNA MER1_type 1 189 0 252 345 14 49 chr4 23316727 23316869 -179011478 + MIR SINE MIR 48 184 -78 208 295 0 0 chr4 23317972 23318050 -179010297 + (TA)n Simple_repeat Simple_repeat 1 78 0 730 270 202 21 chr4 23318570 23319084 -179009263 + L1MC4a LINE L1 5307 5913 -1895 1328 237 104 23 chr4 23319118 23319591 -179008756 + L1MC4a LINE L1 7297 7807 -1 1530 177 39 14 chr4 23319598 23319881 -179008466 + AluJo SINE Alu 1 290 -22 312 233 14 0 chr4 23322040 23322113 -179006234 + L2 LINE L2 2159 2232 -1082 401 342 0 0 chr4 23322285 23322446 -179005901 + L2 LINE L2 2159 2319 -995 271 289 87 10 chr4 23322554 23322658 -179005689 + L2 LINE L2 3202 3313 0 805 249 97 37 chr4 23322809 23323136 -179005211 - MER77 LTR ERV1 -4 601 277 2039 172 45 12 chr4 23323448 23323867 -179004480 + L1MB4 LINE L1 5622 6054 -126 384 205 107 0 chr4 23323877 23323989 -179004358 + L1MC/D LINE L1 5203 5326 -820 298 188 0 0 chr4 23323995 23324043 -179004304 + L1MC/D LINE L1 5490 5537 -796 8528 184 41 27 chr4 23324047 23325403 -179002944 + L1MA9 LINE L1 3415 4836 -1476 2101 181 56 7 chr4 23325403 23325811 -179002536 - MSTA LTR MaLR 0 428 1 8528 184 41 27 chr4 23325811 23326923 -179001424 + L1MA9 LINE L1 4836 5930 -382 2379 153 52 2 chr4 23326924 23327329 -179001018 - MSTA LTR MaLR -3 425 1 799 175 11 33 chr4 23327329 23327512 -179000835 + L1MA9 LINE L1 5924 6102 -210 34970 65 5 1 chr4 23327518 23333498 -178994849 + L1PA5 LINE L1 13 6011 -143 2441 66 0 13 chr4 23333836 23334139 -178994208 + AluY SINE Alu 1 299 -12 258 305 142 21 chr4 23334274 23334415 -178993932 - MIR SINE MIR 0 262 105 380 263 97 46 chr4 23335243 23335418 -178992929 - MIR SINE MIR -2 260 77 314 321 84 15 chr4 23335571 23335769 -178992578 + MIR SINE MIR 12 214 -36 266 358 67 8 chr4 23336358 23336478 -178991869 + L2 LINE L2 3146 3272 0 213 250 0 0 chr4 23338109 23338157 -178990190 + (TA)n Simple_repeat Simple_repeat 1 48 0 221 339 55 18 chr4 23339401 23339510 -178988837 - MIR3 SINE MIR -28 180 68 536 333 58 42 chr4 23339542 23339989 -178988358 + L2 LINE L2 2855 3308 -5 382 352 83 5 chr4 23341277 23341470 -178986877 + MIR SINE MIR 35 242 -20 1980 172 8 0 chr4 23341500 23341861 -178986486 + L1PA13 LINE L1 4647 5010 -1136 6206 96 8 6 chr4 23342010 23343138 -178985209 + L1PA13 LINE L1 5029 6160 -3 210 56 111 0 chr4 23343305 23343359 -178984988 + (TA)n Simple_repeat Simple_repeat 2 61 0 431 263 8 42 chr4 23343557 23343675 -178984672 - MLT1I LTR MaLR -200 209 96 369 329 40 63 chr4 23343690 23343991 -178984356 - L2 LINE L2 -352 2962 2669 230 224 0 0 chr4 23345710 23345759 -178982588 + L2 LINE L2 3199 3247 -66 663 276 152 9 chr4 23345781 23345991 -178982356 - MIR SINE MIR -20 242 3 244 328 0 0 chr4 23346010 23346071 -178982276 + L2 LINE L2 3194 3254 -18 1810 158 50 3 chr4 23346412 23346735 -178981612 + MER2 DNA MER2_type 8 345 0 424 237 72 17 chr4 23347865 23348006 -178980341 + MIR SINE MIR 22 162 -65 2550 105 6 3 chr4 23348376 23348728 -178979619 - THE1B LTR MaLR -11 353 1 406 250 76 0 chr4 23349048 23349140 -178979207 - MER81 DNA DNA 0 114 16 319 267 0 67 chr4 23349178 23349268 -178979079 - MER81 DNA DNA -30 84 1 1953 197 11 0 chr4 23350034 23350395 -178977952 - MLT1A1 LTR MaLR 0 365 1 685 200 21 7 chr4 23352086 23352226 -178976121 + FLAM_C SINE Alu 2 143 0 2283 80 3 0 chr4 23352789 23353075 -178975272 - AluY SINE Alu -24 287 1 525 309 173 12 chr4 23353497 23353827 -178974520 - L2 LINE L2 -4 3309 2927 267 274 153 16 chr4 23353847 23353971 -178974376 - MIR SINE MIR -72 190 50 1529 215 82 32 chr4 23354152 23354593 -178973754 - MLT1C LTR MaLR -4 463 1 276 248 51 22 chr4 23355342 23355479 -178972868 - L1ME4a LINE L1 -3 6118 5978 31 26 0 0 chr4 23355492 23355530 -178972817 + AT_rich Low_complexity Low_complexity 1 38 0 2507 100 27 14 chr4 23355534 23355904 -178972443 + THE1C LTR MaLR 1 375 0 228 323 121 0 chr4 23356022 23356220 -178972127 - L1ME4a LINE L1 -391 5730 5509 326 273 106 31 chr4 23357987 23358148 -178970199 - MIR SINE MIR -38 224 52 1291 197 62 31 chr4 23358949 23359238 -178969109 - AluJo SINE Alu -14 298 1 25 31 0 0 chr4 23359284 23359316 -178969031 + AT_rich Low_complexity Low_complexity 1 32 0 181 250 96 0 chr4 23359563 23359615 -178968732 + L2 LINE L2 3211 3267 -5 233 429 14 14 chr4 23359729 23359869 -178968478 + L3 LINE CR1 1437 1576 -1 209 108 27 0 chr4 23360389 23360426 -178967921 + GA-rich Low_complexity Low_complexity 4 41 0 705 326 100 19 chr4 23360526 23360955 -178967392 + L2 LINE L2 2832 3295 -18 1573 208 22 25 chr4 23362948 23363314 -178965033 - MLT1A1 LTR MaLR 0 365 1 736 214 90 55 chr4 23363765 23363966 -178964381 - MIR SINE MIR -1 261 54 460 213 0 0 chr4 23364702 23364782 -178963565 + Tigger4(Zombi) DNA MER2_type 1 80 -2651 2749 134 2 22 chr4 23364789 23365235 -178963112 + Tigger4(Zombi) DNA MER2_type 2295 2731 0 314 364 73 40 chr4 23365347 23365594 -178962753 - L2 LINE L2 -252 3061 2807 240 274 161 24 chr4 23366421 23366545 -178961802 - MIR SINE MIR -12 250 110 2243 163 12 86 chr4 23366583 23367074 -178961273 - LTR32 LTR ERVL -6 465 11 951 269 48 38 chr4 23367827 23368225 -178960122 + L1ME3A LINE L1 5637 6038 -132 1611 179 3 14 chr4 23368958 23369270 -178959077 + AluSx SINE Alu 1 309 0 21 0 0 0 chr4 23369584 23369605 -178958742 + AT_rich Low_complexity Low_complexity 1 21 0 578 329 119 9 chr4 23370308 23370527 -178957820 + MIR SINE MIR 2 244 -18 24 0 0 0 chr4 23370528 23370552 -178957795 + AT_rich Low_complexity Low_complexity 1 24 0 1918 146 0 0 chr4 23371546 23371813 -178956534 + AluSx SINE Alu 2 268 -44 434 33 17 0 chr4 23371822 23371882 -178956465 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 7510 175 60 20 chr4 23372596 23373992 -178954355 + L1 LINE L1 10 1460 -6105 4943 164 47 16 chr4 23373970 23374985 -178953362 + L1 LINE L1 5183 6229 -1336 * 412 322 86 12 chr4 23375772 23376017 -178952330 - L1ME LINE L1 -304 5817 5555 769 207 20 0 chr4 23376138 23376288 -178952059 - MER97a DNA MER1_type? -712 182 30 261 322 122 9 chr4 23376361 23376476 -178951871 - L2 LINE L2 -1 3271 3144 541 356 90 23 chr4 23377169 23377647 -178950700 - L2 LINE L2 0 3313 2804 332 326 51 23 chr4 23379427 23379520 -178948827 + MIR SINE MIR 81 170 -92 793 266 18 14 chr4 23379520 23379738 -178948609 - MER20 DNA MER1_type 0 219 1 332 326 51 23 chr4 23379738 23379819 -178948528 + MIR SINE MIR 170 260 -2 711 10 20 59 chr4 23380231 23380332 -178948015 - L1PA4 LINE L1 0 6155 6059 1252 14 0 0 chr4 23380332 23380475 -178947872 + L1PA4 LINE L1 5785 5927 -228 648 242 64 0 chr4 23380838 23380995 -178947352 + MER58A DNA MER1_type 28 194 -30 1181 213 33 84 chr4 23380996 23381475 -178946872 + MLT1C LTR MaLR 1 466 -1 228 309 21 0 chr4 23381816 23381910 -178946437 - L1ME LINE L1 -366 5796 5701 1206 270 59 28 chr4 23381917 23382339 -178946008 + MSTB2 LTR MaLR 23 457 0 416 332 87 12 chr4 23382339 23382592 -178945755 - L1ME LINE L1 -459 5711 5440 25 0 0 0 chr4 23382907 23382932 -178945415 + AT_rich Low_complexity Low_complexity 1 25 0 309 295 29 19 chr4 23383162 23383267 -178945080 + L2 LINE L2 2986 3091 -181 425 313 93 56 chr4 23384154 23384476 -178943871 + L2 LINE L2 2945 3283 -30 2137 136 30 38 chr4 23384476 23384843 -178943504 - THE1B LTR MaLR 0 364 1 425 313 93 56 chr4 23384843 23384875 -178943472 + L2 LINE L2 3283 3312 -1 225 0 0 0 chr4 23386332 23386357 -178941990 + (T)n Simple_repeat Simple_repeat 1 25 0 468 0 0 0 chr4 23386524 23386576 -178941771 + (CA)n Simple_repeat Simple_repeat 1 52 0 255 388 41 0 chr4 23387052 23387150 -178941197 - L2 LINE L2 -12 3301 3200 626 315 131 33 chr4 23387250 23387726 -178940621 - L2 LINE L2 0 3313 2742 245 29 29 0 chr4 23387726 23387760 -178940587 + (TATAA)n Simple_repeat Simple_repeat 5 39 0 626 315 131 33 chr4 23387760 23387940 -178940407 - L2 LINE L2 -571 2742 2581 309 230 81 46 chr4 23387970 23388104 -178940243 + MLT1A2 LTR MaLR 3 150 -215 834 169 14 0 chr4 23388112 23388254 -178940093 + FRAM SINE Alu 1 142 -34 210 118 0 0 chr4 23388261 23388295 -178940052 + (T)n Simple_repeat Simple_repeat 1 34 0 689 161 71 109 chr4 23388306 23388517 -178939830 + MLT1A2 LTR MaLR 172 374 0 341 333 79 12 chr4 23388527 23388692 -178939655 - L2 LINE L2 -38 3275 3100 192 343 55 0 chr4 23388736 23388809 -178939538 - L2 LINE L2 -178 3094 3018 435 303 112 62 chr4 23389292 23389794 -178938553 + L2 LINE L2 2790 3313 0 750 255 41 0 chr4 23389999 23390195 -178938152 - MER58A DNA MER1_type -20 204 1 362 276 168 16 chr4 23390266 23390451 -178937896 - MIR SINE MIR -15 247 35 2054 125 0 7 chr4 23391944 23392255 -178936092 - AluSg SINE Alu 0 310 2 317 273 16 55 chr4 23392315 23392443 -178935904 - MIR SINE MIR -106 156 34 307 205 77 13 chr4 23394332 23394410 -178933937 + MLT1L LTR MaLR 15 97 -518 1428 174 48 65 chr4 23395053 23395247 -178933100 - MER2 DNA MER2_type 0 345 158 1052 158 15 10 chr4 23395247 23395443 -178932904 + L1PB2 LINE L1 5953 6149 -2 1428 174 48 65 chr4 23395443 23395599 -178932748 - MER2 DNA MER2_type -187 158 1 2042 313 109 22 chr4 23395953 23397225 -178931122 + L2 LINE L2 1919 3305 -8 2065 152 3 0 chr4 23398122 23398424 -178929923 + AluSx SINE Alu 2 304 -8 2417 83 0 3 chr4 23399061 23399363 -178928984 - AluY SINE Alu -8 303 3 271 305 121 32 chr4 23399696 23399886 -178928461 + L2 LINE L2 2708 2914 -400 3804 41 2 0 chr4 23399908 23400369 -178927978 - L1PA4 LINE L1 -3 6152 5691 221 220 40 0 chr4 23400645 23400695 -178927652 + L2 LINE L2 3262 3313 0 386 304 82 6 chr4 23400702 23400873 -178927474 + MIR SINE MIR 28 211 -51 210 250 46 93 chr4 23400984 23401092 -178927255 - MIR SINE MIR -48 214 112 707 197 0 7 chr4 23401299 23401436 -178926911 - MLT1D LTR MaLR -369 136 1 312 275 76 15 chr4 23401904 23402035 -178926312 + MIR SINE MIR 114 252 -10 180 0 0 0 chr4 23402167 23402187 -178926160 + (TA)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr4 23402186 23402206 -178926141 + (CA)n Simple_repeat Simple_repeat 2 21 0 485 320 195 29 chr4 23403631 23404222 -178924125 + L2 LINE L2 1665 2353 -961 295 352 25 92 chr4 23404627 23404942 -178923405 + L2 LINE L2 2869 3162 -110 260 297 20 0 chr4 23405407 23405508 -178922839 + Charlie7 DNA MER1_type 2510 2612 0 240 284 0 0 chr4 23405571 23405645 -178922702 + A-rich Low_complexity Low_complexity 1 74 0 195 354 15 0 chr4 23405772 23405837 -178922510 + L2 LINE L2 2715 2780 -534 257 288 168 56 chr4 23406126 23406251 -178922096 + L2 LINE L2 3134 3272 0 443 183 32 11 chr4 23406974 23407067 -178921280 - MSTB LTR MaLR -329 97 3 556 236 21 36 chr4 23407281 23407421 -178920926 + MIR SINE MIR 11 148 -114 466 222 9 9 chr4 23408314 23408422 -178919925 - MIR SINE MIR -4 258 151 223 226 0 19 chr4 23408510 23408563 -178919784 + (TA)n Simple_repeat Simple_repeat 1 52 0 2150 115 45 25 chr4 23408806 23409163 -178919184 + THE1B LTR MaLR 1 364 0 201 311 143 34 chr4 23409164 23409283 -178919064 - L2 LINE L2 -226 3087 2956 * 288 310 106 0 chr4 23409282 23409395 -178918952 - MIR SINE MIR -126 136 12 210 405 63 0 chr4 23409715 23409794 -178918553 + L2 LINE L2 3160 3243 -29 411 314 0 7 chr4 23409815 23409955 -178918392 + L2 LINE L2 2269 2407 -907 213 337 33 0 chr4 23410022 23410114 -178918233 + L2 LINE L2 2551 2645 -669 363 296 63 39 chr4 23410219 23410425 -178917922 + L2 LINE L2 2272 2482 -832 206 295 64 0 chr4 23411006 23411084 -178917263 + L2 LINE L2 3190 3272 0 2166 107 0 41 chr4 23411748 23412065 -178916282 + AluSx SINE Alu 1 304 -8 451 293 26 0 chr4 23412121 23412237 -178916110 - L2 LINE L2 -1 3271 3153 392 275 97 100 chr4 23416225 23416761 -178911586 - L1M2 LINE L1 -5457 1392 755 471 301 207 5 chr4 23417645 23417838 -178910509 + MIR SINE MIR 17 248 -14 225 279 0 29 chr4 23417869 23417937 -178910410 + L2 LINE L2 3236 3301 -12 628 292 245 2 chr4 23417939 23418347 -178910000 - L2 LINE L2 -1 3312 2806 516 221 152 44 chr4 23418657 23418783 -178909564 + MIR SINE MIR 8 119 -143 2414 98 0 0 chr4 23418783 23419089 -178909258 + AluSx SINE Alu 1 306 -6 516 221 152 44 chr4 23419089 23419166 -178909181 + MIR SINE MIR 119 233 -29 225 169 0 42 chr4 23419478 23419549 -178908798 + (TATAA)n Simple_repeat Simple_repeat 1 68 0 689 335 30 0 chr4 23419972 23420202 -178908145 - MIR SINE MIR -25 237 1 422 274 54 36 chr4 23420202 23420368 -178907979 + MIR SINE MIR 40 208 -54 525 207 103 45 chr4 23420547 23420750 -178907597 - MIR SINE MIR -15 247 38 254 317 106 19 chr4 23420782 23420886 -178907461 - MER5A DNA MER1_type -5 184 72 445 263 33 0 chr4 23420933 23421085 -178907262 - L1MA10 LINE L1 0 6334 6178 687 108 102 54 chr4 23421113 23421279 -178907068 - L1MC2 LINE L1 -37 6307 6134 974 215 48 4 chr4 23421303 23421531 -178906816 + MLT1B LTR MaLR 153 390 0 428 263 151 20 chr4 23421580 23421732 -178906615 + MER5A DNA MER1_type 12 183 -6 1895 142 3 37 chr4 23421732 23422055 -178906292 + AluJo SINE Alu 1 312 0 241 250 0 0 chr4 23422535 23422591 -178905756 - MIR SINE MIR -110 152 97 2266 105 0 3 chr4 23423212 23423518 -178904829 - AluSq SINE Alu -8 305 1 242 235 111 12 chr4 23424535 23424616 -178903731 - L2 LINE L2 -41 3272 3184 944 235 163 56 chr4 23424727 23425164 -178903183 - MLT1H LTR MaLR -7 542 46 1771 212 11 6 chr4 23425164 23425527 -178902820 + MLT1A1 LTR MaLR 1 365 0 944 235 163 56 chr4 23425527 23425575 -178902772 - MLT1H LTR MaLR -503 46 5 393 234 16 70 chr4 23425598 23425726 -178902621 - MIR SINE MIR -140 122 2 389 336 137 38 chr4 23425754 23426536 -178901811 - L2 LINE L2 -177 3095 2224 1818 152 173 14 chr4 23426537 23426906 -178901441 + MSTA LTR MaLR 1 428 0 772 252 111 9 chr4 23426957 23427183 -178901164 - MIR SINE MIR -12 250 2 210 328 42 50 chr4 23427464 23427583 -178900764 - L2 LINE L2 -8 3264 3147 4918 213 47 25 chr4 23427852 23428721 -178899626 + Charlie1a DNA MER1_type 7 920 -1841 2296 109 3 0 chr4 23428721 23429033 -178899314 - AluSp SINE Alu 0 313 1 4918 213 47 25 chr4 23429033 23429581 -178898766 + Charlie1a DNA MER1_type 920 1455 0 255 381 0 31 chr4 23429638 23429735 -178898612 - L2 LINE L2 -26 3246 3153 25 31 0 0 chr4 23430025 23430057 -178898290 + AT_rich Low_complexity Low_complexity 1 32 0 325 270 70 20 chr4 23430077 23430177 -178898170 - L1M4c LINE L1 -3987 2553 2449 657 185 185 12 chr4 23430268 23430430 -178897917 - MER20 DNA MER1_type 0 219 30 318 261 0 0 chr4 23430430 23430495 -178897852 - MER20 DNA MER1_type -154 65 1 532 296 87 36 chr4 23430813 23431648 -178896699 - L1M4c LINE L1 -4681 1861 1136 207 0 0 0 chr4 23431826 23431849 -178896498 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 230 178 257 30 chr4 23432008 23432109 -178896238 - MER5C DNA MER1_type -200 124 1 2087 113 3 0 chr4 23432771 23433053 -178895294 + AluSp SINE Alu 1 283 -30 694 293 72 78 chr4 23433106 23433581 -178894766 + MLT1K LTR MaLR 4 475 -113 261 232 242 11 chr4 23433803 23433898 -178894449 + L2 LINE L2 3197 3313 0 425 269 50 8 chr4 23433916 23434035 -178894312 - L2 LINE L2 0 3313 3190 1845 173 12 6 chr4 23434035 23434364 -178893983 + MLT1A1 LTR MaLR 1 331 -34 193 116 93 23 chr4 23434372 23434415 -178893932 + L2 LINE L2 3161 3206 -107 397 294 159 0 chr4 23434553 23434767 -178893580 - LTR33 LTR ERVL -39 482 235 27 62 0 0 chr4 23435014 23435062 -178893285 + AT_rich Low_complexity Low_complexity 1 48 0 183 389 0 0 chr4 23435280 23435352 -178892995 - L2 LINE L2 -683 2631 2560 221 287 129 20 chr4 23436083 23436184 -178892163 - L2 LINE L2 -1 3312 3201 1439 181 7 11 chr4 23436342 23436619 -178891728 - MLT1A1 LTR MaLR 0 365 90 1308 233 3 23 chr4 23436632 23436932 -178891415 + MLT1A1 LTR MaLR 72 365 0 517 172 11 0 chr4 23436932 23437015 -178891332 - MLT1A1 LTR MaLR -272 93 10 203 328 16 0 chr4 23437140 23437201 -178891146 + L2 LINE L2 3210 3271 -1 1552 247 19 56 chr4 23437289 23437804 -178890543 + MLT1D LTR MaLR 1 496 -9 356 316 71 9 chr4 23438468 23438791 -178889556 + L1MEc LINE L1 1401 1743 -4653 852 274 68 58 chr4 23439000 23439467 -178888880 + MLT1H LTR MaLR 71 542 -7 1273 122 0 0 chr4 23439746 23439926 -178888421 - AluSg/x SINE Alu -2 307 128 1208 153 44 16 chr4 23441093 23441406 -178886941 + LTR54 LTR ERV1 1 376 -134 437 307 73 59 chr4 23491443 23491730 -178836617 - MER115 DNA AcHobo -182 511 221 2043 224 76 52 chr4 23491878 23491908 -178836439 - MER21B LTR ERV1 -57 806 778 1702 161 102 15 chr4 23491908 23492243 -178836104 + THE1B LTR MaLR 1 364 0 11697 95 2 0 chr4 23492243 23493820 -178834527 + THE1B-int LTR MaLR 1 1580 0 2202 136 33 22 chr4 23493820 23494180 -178834167 + THE1B LTR MaLR 1 364 0 2043 224 76 52 chr4 23494180 23494884 -178833463 - MER21B LTR ERV1 -84 779 52 365 328 0 24 chr4 23496759 23496884 -178831463 + L2 LINE L2 3190 3311 -2 1949 157 28 0 chr4 23497584 23497871 -178830476 - AluJb SINE Alu -16 296 2 301 327 62 0 chr4 23497872 23497985 -178830362 - L2 LINE L2 -8 3264 3145 335 202 11 0 chr4 23498468 23498557 -178829790 + (TA)n Simple_repeat Simple_repeat 2 91 0 322 332 11 106 chr4 23499440 23499723 -178828624 - L2 LINE L2 0 3272 3017 470 279 106 8 chr4 23499849 23500086 -178828261 + MIR SINE MIR 3 262 0 383 195 35 71 chr4 23501357 23501470 -178826877 + MIR SINE MIR 73 181 -81 456 299 22 0 chr4 23502582 23502716 -178825631 + MLT1H LTR MaLR 212 348 -201 1551 186 6 125 chr4 23502978 23503457 -178824890 - LTR8 LTR ERV1 -269 422 1 572 226 86 86 chr4 23503457 23503492 -178824855 - MER39 LTR ERV1 -134 573 539 2387 61 0 3 chr4 23503492 23503785 -178824562 - AluY SINE Alu -19 292 1 572 226 86 86 chr4 23503785 23504063 -178824284 - MER39 LTR ERV1 -167 540 260 471 143 71 0 chr4 23505488 23505572 -178822775 + Tigger1 DNA MER2_type 1516 1605 -813 294 29 0 0 chr4 23505573 23505608 -178822739 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3737 144 3 2 chr4 23505611 23506229 -178822118 + Tigger1 DNA MER2_type 1800 2418 0 2390 238 67 18 chr4 23506890 23507828 -178820519 + L1M4 LINE L1 3856 4839 -1307 717 58 0 0 chr4 23507829 23507916 -178820431 - AluY SINE Alu -20 291 205 1245 197 74 54 chr4 23507917 23508393 -178819954 + L1M4 LINE L1 4832 5317 -841 347 285 131 0 chr4 23508399 23508529 -178819818 - MIR SINE MIR -66 196 50 185 108 27 0 chr4 23508670 23508707 -178819640 + (CA)n Simple_repeat Simple_repeat 2 39 0 381 158 49 6 chr4 23508735 23508899 -178819448 + (CA)n Simple_repeat Simple_repeat 1 171 0 245 154 44 0 chr4 23508924 23509015 -178819332 + (CA)n Simple_repeat Simple_repeat 1 95 0 491 234 54 0 chr4 23509141 23509252 -178819095 - MER45A DNA AcHobo -26 152 36 674 209 29 7 chr4 23509285 23509424 -178818923 + FRAM SINE Alu 20 161 -15 36782 71 16 14 chr4 23509716 23511812 -178816535 + L1PA5 LINE L1 1 2091 -4063 881 62 0 0 chr4 23511812 23511925 -178816422 + L1PA5 LINE L1 6039 6151 -3 36782 71 16 14 chr4 23511925 23515957 -178812390 + L1PA5 LINE L1 2091 6147 -7 223 318 163 0 chr4 23516452 23516581 -178811766 + MIR SINE MIR 77 226 -36 241 326 45 11 chr4 23517474 23517563 -178810784 + MIR SINE MIR 9 100 -162 449 320 102 15 chr4 23517643 23517840 -178810507 + MIR SINE MIR 4 217 -45 2153 121 0 0 chr4 23517857 23518154 -178810193 + AluSq SINE Alu 1 297 -16 1877 159 3 19 chr4 23518700 23519059 -178809288 - L1M2 LINE L1 -569 5743 5391 649 276 93 32 chr4 23519059 23519305 -178809042 - MIR SINE MIR 0 262 2 209 377 61 9 chr4 23519947 23520061 -178808286 - MIR SINE MIR -124 138 19 237 370 36 7 chr4 23520513 23520651 -178807696 + L2 LINE L2 3168 3309 -4 1486 161 60 28 chr4 23520865 23521218 -178807129 + THE1C LTR MaLR 12 375 0 313 355 30 15 chr4 23522217 23522417 -178805930 + HERV16 LTR ERVL 480 682 -5082 274 368 24 42 chr4 23522675 23523009 -178805338 + HERV16 LTR ERVL 1091 1418 -4346 7120 129 32 8 chr4 23523316 23524519 -178803828 - Tigger3b DNA MER2_type 0 1231 1 260 358 50 17 chr4 23524594 23524714 -178803633 + HERV16 LTR ERVL 2876 2999 -1997 1267 337 63 27 chr4 23524795 23525949 -178802398 + HERV16 LTR ERVL 3150 4345 -1419 335 361 33 7 chr4 23526341 23526615 -178801732 + HERV16 LTR ERVL 5047 5327 -327 1886 155 132 5 chr4 23527010 23527390 -178800957 - MSTA LTR MaLR 0 428 1 311 313 119 0 chr4 23527696 23527830 -178800517 + LTR67 LTR ERVL 408 557 0 2331 255 43 7 chr4 23527909 23528634 -178799713 - L1ME2 LINE L1 -6 6158 5408 2122 95 7 3 chr4 23528640 23528936 -178799411 + THE1B LTR MaLR 68 364 0 3584 257 72 7 chr4 23528936 23530417 -178797930 - L1ME2 LINE L1 -745 5401 3836 244 103 0 0 chr4 23530432 23530471 -178797876 - L1PB1 LINE L1 -23 6128 6090 * 5882 153 23 9 chr4 23530468 23532202 -178796145 - L1PB1 LINE L1 0 6151 4389 185 0 40 0 chr4 23532202 23532227 -178796120 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 5882 153 23 9 chr4 23532227 23532429 -178795918 - L1PB1 LINE L1 -1762 4389 4191 508 275 181 14 chr4 23532432 23532792 -178795555 - L1ME2 LINE L1 -2300 3846 3427 688 160 0 0 chr4 23532825 23532950 -178795397 + L1MA3 LINE L1 3826 3950 -2196 28972 34 14 1 chr4 23532980 23539010 -178789337 + L1PA2 LINE L1 2 6155 0 6663 185 25 9 chr4 23539022 23540451 -178787896 + L1MA3 LINE L1 3951 5401 -745 4737 154 17 19 chr4 23540456 23541296 -178787051 + L1MA3 LINE L1 5447 6284 -21 385 272 115 10 chr4 23541381 23541694 -178786653 - L1ME2 LINE L1 -2789 3357 3012 2509 105 39 3 chr4 23541788 23542150 -178786197 + THE1C LTR MaLR 1 375 0 472 301 21 43 chr4 23542248 23542527 -178785820 - L1ME2 LINE L1 -3361 2785 2513 12613 214 30 17 chr4 23542580 23544661 -178783686 - L1MEc LINE L1 -1241 4974 2862 1415 75 0 0 chr4 23544661 23544848 -178783499 - L1PA5 LINE L1 0 6154 5968 12613 214 30 17 chr4 23544848 23546083 -178782264 - L1MEc LINE L1 -3353 2862 1644 242 209 66 55 chr4 23546517 23546608 -178781739 - L1ME LINE L1 -509 5612 5521 22 0 0 0 chr4 23547155 23547177 -178781170 + AT_rich Low_complexity Low_complexity 1 22 0 3621 109 31 7 chr4 23547386 23547927 -178780420 - L1PA13 LINE L1 -25 6138 5585 3495 145 35 2 chr4 23547936 23548761 -178779586 + L1PA13 LINE L1 4733 5575 -588 1107 324 34 43 chr4 23549796 23550663 -178777684 + L2 LINE L2 2445 3313 0 188 370 14 75 chr4 23552391 23552537 -178775810 - L2 LINE L2 0 3272 3136 339 241 51 0 chr4 23552572 23552651 -178775696 + MER7A DNA MER2_type 1 81 -265 4711 130 43 49 chr4 23552671 23552816 -178775531 - L1PA16 LINE L1 -1 6165 6021 2560 45 0 19 chr4 23552816 23553130 -178775217 - AluY SINE Alu 0 311 4 2154 123 7 0 chr4 23553130 23553431 -178774916 - AluSg SINE Alu -7 303 1 4711 130 43 49 chr4 23553431 23554186 -178774161 - L1PA16 LINE L1 -143 6023 5269 1456 169 23 19 chr4 23554187 23554453 -178773894 + MER7A DNA MER2_type 69 335 -1 216 259 0 0 chr4 23554465 23554546 -178773801 + (TA)n Simple_repeat Simple_repeat 2 82 0 1844 175 15 18 chr4 23554573 23554916 -178773431 - MLT2C1 LTR ERVL -53 344 3 479 381 47 27 chr4 23554919 23555218 -178773129 - L2 LINE L2 -107 3165 2861 259 319 56 21 chr4 23555429 23555758 -178772589 + L2 LINE L2 2810 3224 -89 236 326 52 37 chr4 23556287 23556422 -178771925 + MIR SINE MIR 126 262 0 192 122 0 189 chr4 23557408 23557482 -178770865 - L2 LINE L2 -181 3091 3032 1704 164 23 49 chr4 23557671 23558006 -178770341 - THE1C LTR MaLR 0 375 50 2291 124 22 28 chr4 23558006 23558370 -178769977 - THE1B LTR MaLR 0 364 3 1704 164 23 49 chr4 23558370 23558419 -178769928 - THE1C LTR MaLR -325 50 1 25 31 0 0 chr4 23558913 23558945 -178769402 + AT_rich Low_complexity Low_complexity 1 32 0 2047 141 16 37 chr4 23559242 23559624 -178768723 - THE1C LTR MaLR -1 374 1 255 292 0 0 chr4 23559640 23559705 -178768642 + (CATA)n Simple_repeat Simple_repeat 3 67 0 606 219 0 16 chr4 23559872 23559995 -178768352 + FLAM_A SINE Alu 2 122 -11 2211 130 11 22 chr4 23562331 23562699 -178765648 - THE1B LTR MaLR 0 364 1 11341 107 4 1 chr4 23562699 23564275 -178764072 - THE1B-int LTR MaLR 0 1580 1 2244 136 8 19 chr4 23564275 23564643 -178763704 - THE1B LTR MaLR 0 364 1 184 302 48 16 chr4 23565150 23565213 -178763134 - L2 LINE L2 -3 3269 3205 445 313 111 15 chr4 23566808 23567032 -178761315 - MIR SINE MIR -19 243 2 1454 182 46 89 chr4 23567037 23567432 -178760915 + MLT1B LTR MaLR 5 382 -8 1194 76 10 26 chr4 23568060 23568366 -178759981 + (TAGA)n Simple_repeat Simple_repeat 1 301 0 1013 233 82 48 chr4 23569899 23570251 -178758096 - MLT1A1 LTR MaLR 0 365 2 692 183 35 28 chr4 23570543 23570685 -178757662 + MIR SINE MIR 38 180 -82 22 0 0 0 chr4 23570718 23570740 -178757607 + AT_rich Low_complexity Low_complexity 1 22 0 361 293 120 20 chr4 23570759 23570909 -178757438 - MIR SINE MIR -26 236 72 1846 211 114 71 chr4 23571180 23571802 -178756545 + MLT1E1 LTR MaLR 3 651 -3 2524 57 0 13 chr4 23571809 23572124 -178756223 + AluY SINE Alu 1 311 0 188 435 0 0 chr4 23572205 23572297 -178756050 - MIR3 SINE MIR -21 187 96 594 277 98 18 chr4 23572792 23573016 -178755331 + MIR SINE MIR 13 254 -8 2127 109 10 0 chr4 23574474 23574767 -178753580 + AluSp SINE Alu 1 296 -17 378 282 34 51 chr4 23575272 23575389 -178752958 + L2 LINE L2 3179 3293 -20 673 263 44 31 chr4 23575393 23575621 -178752726 - MIR SINE MIR -19 243 13 540 267 27 63 chr4 23575927 23576148 -178752199 - MIR SINE MIR -1 261 49 198 254 0 36 chr4 23576253 23576308 -178752039 - MIR SINE MIR -136 72 20 716 112 0 0 chr4 23576314 23576465 -178751882 - AluSp/q SINE Alu 0 337 187 1613 183 55 55 chr4 23576941 23577308 -178751039 - MLT1A2 LTR MaLR -7 367 1 3921 171 69 17 chr4 23577623 23578408 -178749939 + LTR1B LTR ERV1 1 826 0 691 179 342 15 chr4 23579448 23579635 -178748712 - MLT2B2 LTR ERVL 0 515 265 516 100 62 0 chr4 23579635 23579715 -178748632 + PABL_A LTR ERV1 1 85 -575 10349 87 6 1 chr4 23579715 23581173 -178747174 - L1P LINE L1 -1479 4667 3203 4239 85 9 7 chr4 23581173 23581748 -178746599 + PABL_B LTR ERV1 92 667 0 1589 176 11 0 chr4 23581748 23582010 -178746337 - MLT2B2 LTR ERVL -250 265 1 346 259 54 27 chr4 23582105 23582252 -178746095 - HAL1 LINE L1 -476 2031 1881 1997 139 40 32 chr4 23582403 23582749 -178745598 - THE1B LTR MaLR -15 349 1 1173 267 32 19 chr4 23582754 23583125 -178745222 - HAL1 LINE L1 -831 1676 1301 400 304 25 13 chr4 23583192 23583350 -178744997 - MLT1E LTR MaLR -433 160 1 2044 58 11 4 chr4 23584625 23584885 -178743462 - L1PA7 LINE L1 -361 5793 5532 2804 62 0 6 chr4 23584888 23585245 -178743102 + L1PA7 LINE L1 5795 6149 -5 281 102 41 0 chr4 23585245 23585294 -178743053 + (TATG)n Simple_repeat Simple_repeat 3 53 0 262 327 89 10 chr4 23585497 23585598 -178742749 + L2 LINE L2 3187 3295 -18 581 302 40 24 chr4 23585920 23586172 -178742175 + MIR SINE MIR 4 259 -3 360 275 78 34 chr4 23586174 23586432 -178741915 + MLT1J2 LTR MaLR 3 226 -183 671 180 8 8 chr4 23586926 23587048 -178741299 - MLT1B LTR MaLR -7 383 262 205 143 16 16 chr4 23587156 23587219 -178741128 + (TA)n Simple_repeat Simple_repeat 2 64 0 306 0 0 0 chr4 23587226 23587260 -178741087 + (TG)n Simple_repeat Simple_repeat 2 35 0 208 161 18 36 chr4 23587468 23587524 -178740823 + T-rich Low_complexity Low_complexity 1 55 0 213 319 90 24 chr4 23587615 23587781 -178740566 + L3 LINE CR1 580 756 -821 25 95 0 0 chr4 23588352 23588426 -178739921 + AT_rich Low_complexity Low_complexity 1 74 0 1445 214 0 21 chr4 23588431 23588754 -178739593 + AluJb SINE Alu 1 317 0 761 261 128 28 chr4 23588981 23589341 -178739006 - L2 LINE L2 -1 3312 2917 805 291 160 27 chr4 23589362 23589836 -178738511 + L3 LINE CR1 958 1494 -83 2262 111 0 3 chr4 23589991 23590297 -178738050 - AluSg SINE Alu -5 305 1 2075 115 4 7 chr4 23590757 23591083 -178737264 + AluSg SINE Alu 4 328 0 216 364 0 0 chr4 23591220 23591297 -178737050 + L2 LINE L2 3196 3272 0 231 261 31 0 chr4 23591316 23591381 -178736966 - MARNA DNA Mariner -112 474 408 228 245 144 50 chr4 23591589 23591728 -178736619 + L2 LINE L2 2520 2671 -643 461 296 26 20 chr4 23591758 23591910 -178736437 + MIR SINE MIR 59 211 -51 386 261 106 67 chr4 23592227 23592407 -178735940 + L2 LINE L2 3085 3271 -1 1902 149 88 25 chr4 23593589 23593986 -178734361 + MER65A LTR ERV1 1 422 -23 329 325 41 35 chr4 23594027 23594196 -178734151 - MIR SINE MIR -87 175 6 2500 84 29 0 chr4 23594221 23594566 -178733781 + THE1A LTR MaLR 1 355 0 5740 108 11 1 chr4 23594567 23595363 -178732984 + THE1A-int LTR MaLR 2 805 -775 3258 96 5 0 chr4 23595369 23595797 -178732550 + THE1A-int LTR MaLR 1151 1580 0 2622 88 6 0 chr4 23595797 23596150 -178732197 + THE1A LTR MaLR 1 355 0 255 307 0 23 chr4 23596150 23596238 -178732109 + (CATATA)n Simple_repeat Simple_repeat 1 86 0 359 370 14 7 chr4 23598153 23598291 -178730056 - L2 LINE L2 0 3272 3134 2212 116 0 7 chr4 23598309 23598611 -178729736 + AluSx SINE Alu 1 300 -12 248 174 20 0 chr4 23598808 23598872 -178729475 - MLT1I LTR MaLR -26 541 307 2336 51 3 0 chr4 23598972 23599265 -178729082 - L1PA4 LINE L1 0 6155 5862 5226 25 0 0 chr4 23599265 23600040 -178728307 + L1PA4 LINE L1 5091 5865 -290 303 268 23 19 chr4 23600105 23600208 -178728139 - MLT1I LTR MaLR -258 151 53 406 296 130 0 chr4 23601292 23601454 -178726893 - MIR SINE MIR -14 248 66 979 309 38 16 chr4 23601653 23602019 -178726328 + HAL1 LINE L1 261 634 -1873 593 239 77 66 chr4 23602047 23602411 -178725936 + HAL1 LINE L1 2131 2498 -9 394 271 56 39 chr4 23602529 23602677 -178725670 + MIR3 SINE MIR 14 166 -42 1103 45 0 0 chr4 23603174 23603308 -178725039 + L1PA5 LINE L1 6008 6141 -13 450 0 0 0 chr4 23603310 23603360 -178724987 + (TA)n Simple_repeat Simple_repeat 1 50 0 318 283 127 73 chr4 23603698 23603906 -178724441 - MLT1J1 LTR MaLR -114 332 100 1897 194 29 5 chr4 23603906 23604287 -178724060 + MLT1B LTR MaLR 1 390 0 318 283 127 73 chr4 23604287 23604392 -178723955 - MLT1J1 LTR MaLR -346 100 2 183 244 52 122 chr4 23605376 23605491 -178722856 - L2 LINE L2 -86 3227 3121 * 450 284 69 27 chr4 23605486 23605771 -178722576 - L2 LINE L2 -559 2755 2422 1017 200 26 0 chr4 23605978 23606173 -178722174 + LTR32 LTR ERVL 15 214 -257 4240 79 32 29 chr4 23606173 23607219 -178721128 - MER11A LTR ERVK 0 1266 1 1182 220 20 4 chr4 23607219 23607464 -178720883 + LTR32 LTR ERVL 209 457 -14 862 189 0 7 chr4 23609132 23609285 -178719062 - MER61A LTR ERV1 -191 152 1 197 219 37 122 chr4 23609744 23609826 -178718521 + MIR SINE MIR 118 192 -70 630 306 47 35 chr4 23609827 23610085 -178718262 + MIR SINE MIR 2 262 0 282 287 160 13 chr4 23610130 23610280 -178718067 - MIR SINE MIR -2 260 89 190 371 52 26 chr4 23610440 23610556 -178717791 - MIR SINE MIR -28 234 116 459 313 67 33 chr4 23611515 23611762 -178716585 + MIR SINE MIR 8 257 -5 684 301 56 5 chr4 23612480 23612696 -178715651 - MIR SINE MIR -20 242 16 268 289 87 19 chr4 23615078 23615182 -178713165 + L2 LINE L2 3158 3268 -4 * 336 274 24 65 chr4 23615151 23615275 -178713072 - L2 LINE L2 -3 3310 3192 231 170 0 0 chr4 23615318 23615365 -178712982 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 517 311 101 35 chr4 23616023 23616074 -178712273 + LTR16A1 LTR ERVL 2 48 -409 1673 175 45 17 chr4 23616074 23616429 -178711918 - MLT1A1 LTR MaLR 0 365 1 517 311 101 35 chr4 23616429 23616805 -178711542 + LTR16A1 LTR ERVL 48 457 0 210 236 0 36 chr4 23617324 23617379 -178710968 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 345 285 102 7 chr4 23617384 23617521 -178710826 - MIR3 SINE MIR -25 183 34 183 375 0 11 chr4 23618718 23618806 -178709541 + MER5A DNA MER1_type 27 113 -76 854 192 0 0 chr4 23619046 23619216 -178709131 + AluJb SINE Alu 138 307 0 270 293 93 27 chr4 23620363 23620513 -178707834 - MIR SINE MIR -74 188 29 1913 225 59 17 chr4 23620848 23621418 -178706929 + L1MC4a LINE L1 6176 6358 -1 2169 214 65 62 chr4 23621977 23622869 -178705478 - Charlie2 DNA MER1_type 0 2862 1968 30 45 0 0 chr4 23622875 23622919 -178705428 + AT_rich Low_complexity Low_complexity 1 44 0 590 252 58 71 chr4 23623029 23623338 -178705009 - Charlie2 DNA MER1_type -2453 329 25 508 213 50 14 chr4 23623544 23623685 -178704662 - MER103 DNA DNA -15 151 6 206 364 66 25 chr4 23624306 23624427 -178703920 + MIR SINE MIR 16 141 -67 2856 170 19 14 chr4 23625982 23626494 -178701853 - MLT2B2 LTR ERVL 0 515 1 389 340 28 14 chr4 23626609 23626753 -178701594 + MIR SINE MIR 15 160 -102 3107 21 0 19 chr4 23626755 23627128 -178701219 - L1PA2 LINE L1 0 6155 5790 4676 12 0 0 chr4 23627128 23628032 -178700315 + L1PA2 LINE L1 4884 5787 -368 231 326 22 0 chr4 23628550 23628642 -178699705 + MIR3 SINE MIR 93 186 -22 289 237 34 59 chr4 23628722 23628840 -178699507 + Charlie8 DNA MER1_type 66 180 -2237 477 291 55 39 chr4 23628954 23629221 -178699126 + L2 LINE L2 2917 3303 -10 1354 118 81 0 chr4 23630121 23630332 -178698015 - MER30 DNA MER1_type -2 228 1 27 29 0 0 chr4 23630658 23630692 -178697655 + AT_rich Low_complexity Low_complexity 1 34 0 267 398 41 29 chr4 23631042 23631213 -178697134 + L2 LINE L2 3091 3263 -9 271 289 82 24 chr4 23632277 23632485 -178695862 + L1ME1 LINE L1 4034 4253 -1893 2157 235 94 20 chr4 23632497 23633227 -178695120 + L1ME1 LINE L1 5383 6156 -10 348 134 0 0 chr4 23633492 23633504 -178694843 + (GA)n Simple_repeat Simple_repeat 2 13 -55 195 69 0 0 chr4 23633504 23633533 -178694814 + (CA)n Simple_repeat Simple_repeat 2 30 0 348 134 0 0 chr4 23633533 23633587 -178694760 + (GA)n Simple_repeat Simple_repeat 12 68 0 374 258 68 30 chr4 23633715 23633847 -178694500 + MLT1J LTR MaLR 226 362 -149 303 298 94 41 chr4 23633979 23634150 -178694197 - MIR3 SINE MIR -27 181 2 249 361 25 17 chr4 23634167 23634286 -178694061 - L2 LINE L2 -15 3298 3179 1796 144 20 7 chr4 23634845 23635144 -178693203 + AluSx SINE Alu 1 303 -9 261 188 38 0 chr4 23635186 23635266 -178693081 + (TA)n Simple_repeat Simple_repeat 1 83 0 230 304 0 14 chr4 23635299 23635368 -178692979 + L2 LINE L2 3232 3299 -14 2463 268 49 69 chr4 23636671 23637858 -178690489 + L1MEc LINE L1 331 1541 -4855 2337 61 0 10 chr4 23637858 23638152 -178690195 + AluY SINE Alu 6 296 -15 2463 268 49 69 chr4 23638152 23638514 -178689833 + L1MEc LINE L1 1541 1838 -4558 2018 131 7 0 chr4 23638514 23638797 -178689550 + AluSx SINE Alu 2 286 -26 2463 268 49 69 chr4 23638797 23639113 -178689234 + L1MEc LINE L1 1838 2159 -4237 668 221 13 13 chr4 23639138 23639296 -178689051 - MLT1H LTR MaLR 0 567 410 692 151 0 0 chr4 23639305 23639411 -178688936 + U6 snRNA snRNA 2 107 0 1189 143 20 0 chr4 23639412 23639615 -178688732 + L1MA4A LINE L1 6087 6293 -10 416 276 136 53 chr4 23641595 23641918 -178686429 + MLT1H1 LTR MaLR 179 528 -27 743 293 88 26 chr4 23642384 23642691 -178685656 - MLT1H LTR MaLR -202 347 22 186 280 40 0 chr4 23644075 23644125 -178684222 - L2 LINE L2 -12 3260 3209 7353 40 10 0 chr4 23645357 23646725 -178681622 - L1PA5 LINE L1 -7 6147 4774 9996 29 5 1 chr4 23646727 23647930 -178680417 + L1PA5 LINE L1 3549 4756 -1390 299 291 170 32 chr4 23648289 23648373 -178679974 + LTR33A LTR ERVL 102 173 -350 1811 153 129 21 chr4 23648373 23648759 -178679588 + MSTA LTR MaLR 1 428 0 299 291 170 32 chr4 23648759 23648921 -178679426 + LTR33A LTR ERVL 173 382 -141 2210 104 7 3 chr4 23649286 23649584 -178678763 - AluSx SINE Alu -13 299 1 1145 314 110 13 chr4 23649748 23650276 -178678071 + L2 LINE L2 2352 2930 -384 182 174 22 0 chr4 23651540 23651586 -178676761 + GA-rich Low_complexity Low_complexity 3 49 0 1714 226 35 13 chr4 23651707 23651909 -178676438 - Charlie4a DNA MER1_type -1467 494 298 1809 156 35 30 chr4 23651909 23652282 -178676065 - THE1C LTR MaLR 0 375 1 1714 226 35 13 chr4 23652282 23652539 -178675808 - Charlie4a DNA MER1_type -1663 298 25 189 200 89 22 chr4 23652791 23652836 -178675511 + MIR SINE MIR 131 178 -84 347 228 49 74 chr4 23753157 23753319 -178575028 + L1M4 LINE L1 4162 4319 -1827 378 309 109 51 chr4 23753345 23753620 -178574727 + L2 LINE L2 1476 1766 -1548 6122 46 15 2 chr4 23753631 23754434 -178573913 - L1PA7 LINE L1 -1 6153 5341 23 0 0 0 chr4 23754774 23754797 -178573550 + AT_rich Low_complexity Low_complexity 1 23 0 2487 58 0 6 chr4 23755452 23755765 -178572582 - AluY SINE Alu 0 311 1 288 326 109 51 chr4 23756193 23756797 -178571550 - L2 LINE L2 -524 2790 2152 492 102 82 0 chr4 23757444 23757591 -178570756 + (TA)n Simple_repeat Simple_repeat 2 160 0 3366 156 41 11 chr4 23758552 23759510 -178568837 + L1MA5 LINE L1 4682 5651 -646 1732 144 131 31 chr4 23759513 23759895 -178568452 + MSTA LTR MaLR 9 428 0 3429 137 23 20 chr4 23759895 23760537 -178567810 + L1MA5 LINE L1 5647 6290 -10 553 236 13 45 chr4 23760554 23760711 -178567636 - MLT2B1 LTR ERVL -7 513 362 232 330 42 17 chr4 23762783 23762901 -178565446 + L2 LINE L2 2667 2787 -527 657 197 145 15 chr4 23763037 23763306 -178565041 + Zaphod DNA AcHobo 524 827 -3204 1391 242 48 5 chr4 23763439 23763856 -178564491 + Zaphod DNA AcHobo 3596 4030 -1 360 0 0 0 chr4 23764176 23764216 -178564131 + (T)n Simple_repeat Simple_repeat 1 40 0 23 0 0 0 chr4 23764438 23764461 -178563886 + AT_rich Low_complexity Low_complexity 1 23 0 2138 133 3 0 chr4 23764461 23764763 -178563584 - AluSx SINE Alu -9 303 1 23 0 0 0 chr4 23764886 23764909 -178563438 + AT_rich Low_complexity Low_complexity 1 23 0 1881 160 5 54 chr4 23765143 23765530 -178562817 - MLT1B LTR MaLR 0 390 23 3027 176 32 12 chr4 23765618 23766203 -178562144 - MER6A DNA MER2_type 0 605 9 21 36 0 0 chr4 23766287 23766315 -178562032 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 23766340 23766361 -178561986 + AT_rich Low_complexity Low_complexity 1 21 0 2004 237 42 15 chr4 23766543 23767087 -178561260 - MLT1F1 LTR MaLR -8 559 1 1377 149 47 139 chr4 23767121 23767523 -178560824 - MLT1A1 LTR MaLR 0 365 1 307 167 30 0 chr4 23767658 23767724 -178560623 + MLT1D LTR MaLR 430 497 -8 512 133 0 0 chr4 23768096 23768171 -178560176 + AluS SINE Alu 221 295 -15 183 42 0 0 chr4 23768441 23768465 -178559882 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2096 117 7 10 chr4 23768574 23768874 -178559473 - AluSx SINE Alu -13 299 1 189 0 0 0 chr4 23769261 23769282 -178559065 + (TA)n Simple_repeat Simple_repeat 2 22 0 260 246 14 0 chr4 23769408 23769477 -178558870 + (TA)n Simple_repeat Simple_repeat 1 70 0 26 0 0 0 chr4 23769920 23769946 -178558401 + AT_rich Low_complexity Low_complexity 1 26 0 806 204 41 0 chr4 23770534 23770706 -178557641 + L1PB4 LINE L1 5966 6144 -12 2314 90 0 16 chr4 23771226 23771537 -178556810 + AluSg1 SINE Alu 1 306 -3 2177 118 0 31 chr4 23772149 23772470 -178555877 - AluSx SINE Alu -1 311 1 31 76 0 0 chr4 23772536 23772602 -178555745 + AT_rich Low_complexity Low_complexity 1 66 0 225 338 12 25 chr4 23772609 23772689 -178555658 - MIR SINE MIR -107 155 77 2186 205 30 41 chr4 23774526 23775086 -178553261 + MLT2B3 LTR ERVL 1 554 0 338 267 67 0 chr4 23776395 23776485 -178551862 - MER5A DNA MER1_type -5 184 89 247 318 109 9 chr4 23776808 23776918 -178551429 + L2 LINE L2 3147 3267 -5 1857 70 23 0 chr4 23777537 23777794 -178550553 + L1PA13 LINE L1 5901 6163 0 302 339 123 40 chr4 23778340 23778665 -178549682 - L2 LINE L2 -833 2481 2130 2365 90 10 0 chr4 23778686 23778987 -178549360 + AluSp SINE Alu 2 305 -8 1249 299 77 5 chr4 23779180 23779584 -178548763 - MER70A LTR ERVL -36 436 4 1459 228 37 3 chr4 23779694 23780019 -178548328 - MLT1A1 LTR MaLR -2 363 28 1893 157 24 24 chr4 23780028 23780397 -178547950 + THE1C LTR MaLR 7 375 0 8442 128 80 8 chr4 23780398 23781870 -178546477 + THE1C-int LTR MaLR 2 1580 0 2048 147 33 14 chr4 23781870 23782238 -178546109 + THE1C LTR MaLR 1 375 0 969 303 22 25 chr4 23782353 23782720 -178545627 + L2 LINE L2 2183 2548 -766 352 253 11 21 chr4 23782856 23782951 -178545396 + MLT1E LTR MaLR 15 108 -485 1523 205 55 41 chr4 23782955 23783414 -178544933 - L1MA9 LINE L1 -34 6278 5814 1879 175 9 0 chr4 23783430 23783768 -178544579 - L1PB4 LINE L1 -3 6153 5813 1023 90 0 0 chr4 23783775 23783908 -178544439 - AluSp/q SINE Alu -2 311 179 507 141 11 0 chr4 23783912 23784004 -178544343 - L1MA9 LINE L1 -345 5823 5731 1062 285 143 18 chr4 23784004 23784443 -178543904 + MLT1E LTR MaLR 97 590 -3 1260 295 63 25 chr4 23784444 23785079 -178543268 + L2 LINE L2 2654 3313 0 2331 98 0 0 chr4 23786063 23786359 -178541988 + AluSx SINE Alu 1 296 -16 351 351 140 36 chr4 23786485 23786821 -178541526 + L3 LINE CR1 11 381 -1196 374 274 110 71 chr4 23786861 23787083 -178541264 + MIR SINE MIR 3 234 -28 825 283 10 5 chr4 23787811 23788016 -178540331 - MIR SINE MIR -36 226 21 894 233 0 5 chr4 23788042 23788231 -178540116 + MER58A DNA MER1_type 37 224 0 185 62 0 31 chr4 23788498 23788530 -178539817 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1539 178 7 21 chr4 23788530 23788811 -178539536 - AluJb SINE Alu -35 277 1 522 228 30 46 chr4 23788924 23789121 -178539226 - L1MC5 LINE L1 -42 7919 7726 2249 142 90 56 chr4 23789835 23790384 -178537963 + MER34B LTR ERV1 11 565 0 1939 135 44 0 chr4 23790889 23791185 -178537162 - AluSx SINE Alu -3 309 1 297 258 103 10 chr4 23791497 23791594 -178536753 - MIR SINE MIR -128 134 29 198 0 0 0 chr4 23791890 23791912 -178536435 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2044 140 0 3 chr4 23791914 23792200 -178536147 - AluSx SINE Alu -27 285 1 246 219 0 41 chr4 23795103 23795176 -178533171 + MLT1K LTR MaLR 448 517 -71 315 313 133 0 chr4 23795199 23795327 -178533020 - MIR SINE MIR -64 198 54 269 314 37 95 chr4 23795630 23795926 -178532421 + L2 LINE L2 2690 2968 -346 2099 83 50 0 chr4 23796031 23796309 -178532038 + AluSx SINE Alu 2 293 -19 367 277 25 0 chr4 23797538 23797657 -178530690 - MLT1L LTR MaLR -5 610 489 2155 126 0 7 chr4 23798075 23798368 -178529979 + AluSx SINE Alu 6 296 -16 533 279 104 40 chr4 23798686 23799012 -178529335 + L2 LINE L2 2967 3313 0 185 252 258 38 chr4 23799058 23799217 -178529130 + L2 LINE L2 2155 2348 -966 282 227 30 0 chr4 23799235 23799301 -178529046 + MER5A DNA MER1_type 119 186 -3 208 125 313 0 chr4 23799595 23799643 -178528704 + L2 LINE L2 3206 3268 -4 23 0 0 0 chr4 23799900 23799923 -178528424 + AT_rich Low_complexity Low_complexity 1 23 0 580 260 79 20 chr4 23800314 23800568 -178527779 - LTR16C LTR ERVL -35 456 188 1657 85 0 0 chr4 23800769 23801004 -178527343 + L1PA14 LINE L1 5865 6099 -62 217 238 0 0 chr4 23802123 23802165 -178526182 + (CATA)n Simple_repeat Simple_repeat 3 44 0 1279 123 30 5 chr4 23802703 23802906 -178525441 + MSTA LTR MaLR 217 424 -4 354 184 149 35 chr4 23803069 23803183 -178525164 + MER58B DNA MER1_type 197 323 -18 394 306 32 0 chr4 23804232 23804356 -178523991 - MIR SINE MIR -128 134 7 374 265 43 26 chr4 23804705 23804822 -178523525 + MIR SINE MIR 48 166 -96 607 99 0 0 chr4 23804944 23805035 -178523312 + L1PB1 LINE L1 5883 5973 -178 1534 70 25 0 chr4 23805036 23805237 -178523110 + AluYa5 SINE Alu 1 206 -105 22 0 0 0 chr4 23805650 23805672 -178522675 + AT_rich Low_complexity Low_complexity 1 22 0 353 294 64 9 chr4 23806390 23806499 -178521848 + MIR SINE MIR 31 145 -63 21 0 0 0 chr4 23807362 23807383 -178520964 + AT_rich Low_complexity Low_complexity 1 21 0 244 289 174 27 chr4 23807851 23808000 -178520347 + L1MEd LINE L1 447 617 -5502 2259 117 39 25 chr4 23808060 23808419 -178519928 + THE1B LTR MaLR 1 364 0 7578 91 51 55 chr4 23808419 23809679 -178518668 + THE1B-int LTR MaLR 1 1255 -325 1084 73 20 26 chr4 23809779 23809962 -178518385 + THE1B LTR MaLR 182 353 -11 1362 148 15 15 chr4 23809970 23810233 -178518114 + MER6 DNA MER2_type 603 865 0 475 256 15 91 chr4 23810386 23810585 -178517762 + MER5A DNA MER1_type 1 184 -5 287 152 60 7 chr4 23812326 23812477 -178515870 + (TA)n Simple_repeat Simple_repeat 2 160 0 250 244 26 13 chr4 23812509 23812587 -178515760 - MER103 DNA DNA -65 101 23 24 0 0 0 chr4 23815856 23815880 -178512467 + AT_rich Low_complexity Low_complexity 1 24 0 200 245 38 0 chr4 23816700 23816753 -178511594 - L2 LINE L2 -2 3311 3257 1389 149 36 60 chr4 23816946 23817227 -178511120 + AluSg SINE Alu 25 298 -12 944 234 84 33 chr4 23818005 23818372 -178509975 - MER119 DNA MER1_type 0 583 198 268 177 32 56 chr4 23818984 23819074 -178509273 - L1MA10 LINE L1 -33 6301 6191 529 296 13 40 chr4 23819118 23819344 -178509003 + L1ME LINE L1 880 1099 -5848 401 223 176 31 chr4 23819417 23819610 -178508737 + L1ME LINE L1 1247 1467 -5480 528 220 59 17 chr4 23819610 23819809 -178508538 - MER58 DNA MER1_type 0 2420 2 291 225 88 88 chr4 23819810 23820050 -178508297 + L1ME LINE L1 1398 1707 -5240 24 0 0 0 chr4 23821587 23821611 -178506736 + AT_rich Low_complexity Low_complexity 1 24 0 380 263 53 21 chr4 23821684 23821874 -178506473 + L1ME LINE L1 5627 5822 -299 189 0 0 0 chr4 23822236 23822257 -178506090 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 377 215 65 0 chr4 23822306 23822399 -178505948 - L1ME4a LINE L1 -283 5838 5740 1995 111 81 0 chr4 23822500 23822771 -178505576 - AluSq SINE Alu -20 293 1 256 235 0 0 chr4 23823840 23823891 -178504456 + L2 LINE L2 3137 3187 -85 203 188 16 62 chr4 23824863 23824927 -178503420 + GA-rich Low_complexity Low_complexity 5 65 0 26 74 0 0 chr4 23826062 23826116 -178502231 + AT_rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr4 23826959 23826982 -178501365 + AT_rich Low_complexity Low_complexity 1 23 0 2056 135 3 3 chr4 23827195 23827491 -178500856 + AluSx SINE Alu 1 296 -16 1232 382 10 33 chr4 23827773 23828079 -178500268 + AluSx SINE Alu 1 299 -13 444 231 60 26 chr4 23828222 23828339 -178500008 - L2 LINE L2 0 3313 3193 404 310 9 9 chr4 23828892 23829005 -178499342 + MIR3 SINE MIR 48 160 -48 1728 151 18 18 chr4 23829077 23829361 -178498986 + AluJo SINE Alu 4 287 -25 327 338 44 4 chr4 23829375 23829512 -178498835 - MIR SINE MIR -48 160 18 2196 89 10 3 chr4 23829788 23830080 -178498267 - AluSx SINE Alu -18 294 1 23 0 0 0 chr4 23830080 23830103 -178498244 + AT_rich Low_complexity Low_complexity 1 23 0 195 283 19 0 chr4 23832246 23832299 -178496048 - L2 LINE L2 -14 3299 3246 378 277 45 51 chr4 23832350 23832527 -178495820 - MLT1L LTR MaLR -114 501 326 192 40 0 0 chr4 23832580 23832605 -178495742 + (CA)n Simple_repeat Simple_repeat 1 25 0 417 246 9 9 chr4 23832661 23832775 -178495572 + MER3 DNA MER1_type 17 130 -79 2131 138 0 3 chr4 23832777 23833082 -178495265 + AluSx SINE Alu 1 304 -8 2088 119 0 31 chr4 23833244 23833562 -178494785 + AluSq SINE Alu 2 309 -4 195 261 134 83 chr4 23833608 23833765 -178494582 - MIR3 SINE MIR -41 167 3 1092 203 77 81 chr4 23833836 23834276 -178494071 - MLT1C LTR MaLR 0 467 1 2267 120 0 13 chr4 23834499 23834815 -178493532 + AluSx SINE Alu 1 312 0 372 313 109 30 chr4 23836088 23836481 -178491866 - L2 LINE L2 -1076 2238 1815 194 239 22 0 chr4 23836481 23836527 -178491820 - L2 LINE L2 -1757 1557 1511 1105 183 24 53 chr4 23836533 23836667 -178491680 + LTR32 LTR ERVL 15 140 -331 2772 10 0 0 chr4 23836667 23836971 -178491376 - AluY SINE Alu -7 304 1 1105 183 24 53 chr4 23836971 23837082 -178491265 + LTR32 LTR ERVL 140 253 -218 810 147 25 147 chr4 23837125 23837167 -178491180 + LTR32 LTR ERVL 261 306 -165 2361 87 0 6 chr4 23837167 23837479 -178490868 - AluSg SINE Alu 0 310 1 810 147 25 147 chr4 23837479 23837674 -178490673 + LTR32 LTR ERVL 306 469 -2 2232 105 0 10 chr4 23840451 23840757 -178487590 - AluY SINE Alu -8 303 1 181 0 0 0 chr4 23841138 23841158 -178487189 + (TTTG)n Simple_repeat Simple_repeat 2 172 0 1869 162 0 0 chr4 23841158 23841442 -178486905 - AluSx SINE Alu -28 284 1 2030 124 34 0 chr4 23842047 23842338 -178486009 - AluSx SINE Alu -11 301 1 386 264 88 19 chr4 23842743 23842902 -178485445 - MER5B DNA MER1_type -4 174 5 219 234 195 13 chr4 23844044 23844121 -178484226 + L2 LINE L2 3191 3281 -32 256 349 246 0 chr4 23844647 23844773 -178483574 + L2 LINE L2 3103 3259 -13 180 0 0 0 chr4 23844799 23844819 -178483528 + (T)n Simple_repeat Simple_repeat 1 20 0 1229 234 77 56 chr4 23846495 23847043 -178481304 - MLT2B1 LTR ERVL -8 512 1 351 356 84 0 chr4 23847245 23847436 -178480911 - MIR SINE MIR 0 262 56 1006 158 6 0 chr4 23847599 23847757 -178480590 + MER46A DNA MER2_type 1 159 -77 375 321 51 41 chr4 23848150 23848346 -178480001 + MIR3 SINE MIR 5 202 -6 2459 78 3 0 chr4 23848687 23848993 -178479354 - AluSg SINE Alu -3 307 1 2089 116 10 0 chr4 23848997 23849290 -178479057 - AluSq SINE Alu -17 296 1 1875 132 6 22 chr4 23849350 23849668 -178478679 - AluSq SINE Alu 0 313 1 1039 181 6 0 chr4 23849668 23849828 -178478519 - AluJ SINE Alu -5 297 137 1352 114 283 4 chr4 23849847 23850084 -178478263 - AluSq SINE Alu 0 303 1 617 321 79 4 chr4 23851182 23851422 -178476925 - MIR SINE MIR 0 262 5 681 192 79 98 chr4 23851516 23851705 -178476642 - L1MC5 LINE L1 -640 7321 7139 2402 61 0 3 chr4 23851705 23852000 -178476347 - AluY SINE Alu -17 294 1 681 192 79 98 chr4 23852000 23852127 -178476220 - L1MC5 LINE L1 -822 7139 7011 442 94 341 24 chr4 23852128 23852213 -178476134 + MER44D DNA MER2_type 3 114 -591 578 191 96 0 chr4 23852219 23852334 -178476013 - AluJ SINE Alu -185 127 2 1868 226 27 16 chr4 23852334 23852776 -178475571 + MER44D DNA MER2_type 104 605 0 298 208 39 52 chr4 23853056 23853067 -178475280 - MER5A DNA MER1_type -4 185 175 4271 95 7 35 chr4 23853067 23853406 -178474941 - MER41A LTR ERV1 0 554 236 2464 64 0 7 chr4 23853406 23853704 -178474643 - AluSg SINE Alu -14 296 1 4271 95 7 35 chr4 23853704 23853934 -178474413 - MER41A LTR ERV1 -318 236 1 298 208 39 52 chr4 23853934 23853999 -178474348 - MER5A DNA MER1_type -14 175 110 1694 183 3 10 chr4 23854361 23854656 -178473691 + AluJo SINE Alu 1 293 -19 557 255 57 81 chr4 23854905 23855203 -178473144 + L2 LINE L2 3023 3313 0 1146 179 145 34 chr4 23855605 23855752 -178472595 + MER58D DNA MER1_type 26 155 -2265 2282 186 33 15 chr4 23855752 23856210 -178472137 - MER31B LTR ERV1 0 466 1 1146 179 145 34 chr4 23856210 23856387 -178471960 + MER58D DNA MER1_type 155 386 0 680 183 8 15 chr4 23856693 23856824 -178471523 + MLT1E3 LTR MaLR 495 624 0 315 255 75 0 chr4 23857656 23857750 -178470597 - MER94 DNA DNA -33 101 1 842 202 80 28 chr4 23858135 23858259 -178470088 - L1MB4 LINE L1 -1 6179 6038 2246 130 47 39 chr4 23858259 23858620 -178469727 + THE1B LTR MaLR 1 364 0 842 202 80 28 chr4 23858620 23858708 -178469639 - L1MB4 LINE L1 -142 6038 5956 341 284 71 58 chr4 23859163 23859318 -178469029 - MER5B DNA MER1_type -21 157 1 726 224 177 10 chr4 23859326 23859518 -178468829 - MER58A DNA MER1_type 0 224 1 1851 169 89 13 chr4 23860057 23860370 -178467977 + MER1B DNA MER1_type 1 337 0 317 339 40 16 chr4 23860776 23860900 -178467447 - MIR SINE MIR -125 137 11 270 227 41 52 chr4 23861999 23862096 -178466251 + HAL1 LINE L1 804 899 -1608 1647 147 102 0 chr4 23862272 23862537 -178465810 + AluSx SINE Alu 1 292 -20 302 344 36 36 chr4 23862552 23862747 -178465600 + L1MEd LINE L1 954 1148 -4971 2224 124 0 0 chr4 23863005 23863304 -178465043 - AluSx SINE Alu -13 299 1 278 238 43 108 chr4 23863313 23863498 -178464849 - L1MC4 LINE L1 0 8042 7870 445 275 127 54 chr4 23863530 23863861 -178464486 - HsTC2 DNA Tc2 -1073 825 471 227 146 83 0 chr4 23863834 23863882 -178464465 - HsTC2 DNA Tc2 -1599 299 248 * 570 323 91 36 chr4 23864369 23864753 -178463594 - LTR16B LTR ERVL -20 444 40 273 302 26 35 chr4 23864828 23864944 -178463403 + MIR SINE MIR 56 170 -92 1622 181 0 29 chr4 23864944 23865253 -178463094 - AluJo SINE Alu -12 300 1 588 204 19 0 chr4 23865804 23865907 -178462440 - MER58B DNA MER1_type 0 341 237 839 194 61 15 chr4 23866036 23866232 -178462115 - MER58B DNA MER1_type -106 235 31 870 158 7 0 chr4 23866574 23866713 -178461634 - FRAM SINE Alu -17 159 20 227 276 30 75 chr4 23866751 23866950 -178461397 - L1MB4 LINE L1 -1940 5868 5679 266 235 10 61 chr4 23866970 23867068 -178461279 - L1MB4 LINE L1 -2124 5684 5592 200 59 29 0 chr4 23867078 23867112 -178461235 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 606 207 0 41 chr4 23867114 23867235 -178461112 - FLAM_A SINE Alu -17 116 1 395 219 47 29 chr4 23867330 23867469 -178460878 - L1MB4 LINE L1 -716 5448 5299 6252 55 1 9 chr4 23867485 23868142 -178460205 - L1PA7 LINE L1 -16 6138 5486 2441 76 0 0 chr4 23868142 23868445 -178459902 - AluY SINE Alu -8 303 1 6252 55 1 9 chr4 23868445 23868566 -178459781 - L1PA7 LINE L1 -668 5486 5366 451 240 62 73 chr4 23868835 23869027 -178459320 - MLT1D LTR MaLR -268 237 48 253 269 140 54 chr4 23870220 23870313 -178458034 - MIR3 SINE MIR -25 183 83 2157 132 0 10 chr4 23870660 23870970 -178457377 + AluSq SINE Alu 1 307 -6 342 277 80 11 chr4 23871088 23871276 -178457071 - L1ME4a LINE L1 -216 5905 5705 1291 93 60 0 chr4 23871690 23871872 -178456475 - L1PB1 LINE L1 0 6151 5959 860 88 0 0 chr4 23871872 23871986 -178456361 - AluY SINE Alu -2 309 196 32 26 0 0 chr4 23872028 23872067 -178456280 + GC_rich Low_complexity Low_complexity 1 39 0 25 65 0 0 chr4 23872198 23872244 -178456103 + GC_rich Low_complexity Low_complexity 1 46 0 259 257 7 29 chr4 23872368 23872504 -178455843 + (CCG)n Simple_repeat Simple_repeat 2 134 0 1432 302 138 24 chr4 23873215 23873837 -178454510 - MER115 DNA AcHobo 0 693 1 557 245 92 5 chr4 23873998 23874182 -178454165 + MER3 DNA MER1_type 1 200 -9 17315 125 18 23 chr4 23874413 23874847 -178453500 + Tigger4(Zombi) DNA MER2_type 5 440 -2291 2435 83 0 6 chr4 23874847 23875159 -178453188 + AluSg SINE Alu 1 310 0 17315 125 18 23 chr4 23875159 23876283 -178452064 + Tigger4(Zombi) DNA MER2_type 440 1544 -1187 2330 103 0 3 chr4 23876283 23876583 -178451764 + AluSq SINE Alu 1 299 -14 17315 125 18 23 chr4 23876583 23877730 -178450617 + Tigger4(Zombi) DNA MER2_type 1544 2696 -35 789 238 0 0 chr4 23877730 23877897 -178450450 + FRAM SINE Alu 1 167 0 337 276 19 0 chr4 23878893 23878998 -178449349 + (TATATG)n Simple_repeat Simple_repeat 4 110 0 1167 110 8 12 chr4 23879421 23879701 -178448646 - MER4A LTR ERV1 0 664 261 696 101 0 10 chr4 23879701 23879800 -178448547 - MER4A LTR ERV1 -566 98 1 1601 178 25 4 chr4 23879841 23880122 -178448225 - AluJo SINE Alu -20 292 6 530 174 6 116 chr4 23880131 23880186 -178448161 - MER3 DNA MER1_type -40 122 143 2592 61 0 0 chr4 23880186 23880497 -178447850 - AluY SINE Alu 0 311 1 530 174 6 116 chr4 23880497 23880613 -178447734 - MER3 DNA MER1_type -18 144 17 192 40 0 0 chr4 23880669 23880694 -178447653 + (TG)n Simple_repeat Simple_repeat 1 25 0 473 279 137 39 chr4 23880747 23880980 -178447367 + MLT1L LTR MaLR 326 581 -34 353 279 126 16 chr4 23881667 23881857 -178446490 + L2 LINE L2 3094 3304 -9 501 257 33 26 chr4 23882249 23882401 -178445946 - MIR SINE MIR -8 254 102 2143 117 7 10 chr4 23883252 23883552 -178444795 - AluSx SINE Alu -13 299 1 1942 138 3 28 chr4 23885109 23885429 -178442918 - AluSx SINE Alu 0 312 1 1496 129 0 9 chr4 23886435 23886659 -178441688 - AluSg/x SINE Alu -4 308 87 1306 183 40 37 chr4 23887612 23887885 -178440462 + ORSL DNA AcHobo 2 275 0 184 194 0 0 chr4 23888269 23888305 -178440042 + L2 LINE L2 3278 3313 0 843 265 28 16 chr4 23890693 23890946 -178437401 + MIR SINE MIR 5 260 -2 261 368 26 43 chr4 23890968 23891085 -178437262 + L2 LINE L2 3141 3255 -17 291 325 172 18 chr4 23891792 23891955 -178436392 - MIR SINE MIR -70 192 5 213 65 0 0 chr4 23895236 23895267 -178433080 + (T)n Simple_repeat Simple_repeat 1 31 0 205 236 18 18 chr4 23895471 23895526 -178432821 - MIR SINE MIR -89 119 65 1222 117 122 19 chr4 23895720 23895934 -178432413 - MER46A DNA MER2_type 0 236 1 21 36 0 0 chr4 23896053 23896081 -178432266 + AT_rich Low_complexity Low_complexity 1 28 0 1882 150 0 3 chr4 23896725 23897018 -178431329 - AluJb SINE Alu -12 300 9 314 197 26 0 chr4 23898532 23898608 -178429739 - L1MC4a LINE L1 -1855 5953 5876 801 286 64 4 chr4 23898683 23898917 -178429430 - MIR SINE MIR -8 254 7 1843 251 78 21 chr4 23899248 23900219 -178428128 - L1ME3 LINE L1 -166 5996 4960 2418 76 0 0 chr4 23901051 23901354 -178426993 - AluY SINE Alu -8 303 1 407 155 14 0 chr4 23901499 23901570 -178426777 + MER58 DNA MER1_type 2328 2399 -21 4579 137 46 20 chr4 23901646 23902495 -178425852 + L1MA4 LINE L1 5254 6124 -176 392 169 48 0 chr4 23902520 23902603 -178425744 + L1MA5 LINE L1 6208 6294 -6 1784 173 0 23 chr4 23902780 23903087 -178425260 - AluJo SINE Alu -12 300 1 339 287 93 9 chr4 23903690 23903798 -178424549 + L2 LINE L2 3153 3269 -3 364 222 25 0 chr4 23904420 23904501 -178423846 + MIR SINE MIR 97 179 -83 1733 153 10 32 chr4 23904575 23904888 -178423459 - AluJo SINE Alu -6 306 1 240 390 95 0 chr4 23904965 23905070 -178423277 + L2 LINE L2 3116 3230 -42 201 74 0 0 chr4 23906622 23906649 -178421698 + (TG)n Simple_repeat Simple_repeat 2 28 0 315 316 143 0 chr4 23907514 23907612 -178420735 + MIR SINE MIR 3 114 -148 2444 183 25 2 chr4 23907646 23908133 -178420214 - L1MB1 LINE L1 -13 6155 5658 298 184 0 0 chr4 23908136 23908185 -178420162 + MIR SINE MIR 105 153 -109 852 297 141 31 chr4 23908303 23909112 -178419235 + L1ME LINE L1 4382 5279 -867 750 261 89 37 chr4 23909143 23909596 -178418751 + L1ME LINE L1 5317 5794 -368 285 218 141 0 chr4 23910063 23910141 -178418206 + MIR SINE MIR 172 260 -2 382 341 46 102 chr4 23910307 23910419 -178417928 + L2 LINE L2 2965 3082 -190 2647 97 14 6 chr4 23910419 23910780 -178417567 - THE1B LTR MaLR 0 364 1 382 341 46 102 chr4 23910780 23910899 -178417448 + L2 LINE L2 3082 3175 -97 2104 99 0 0 chr4 23910899 23911171 -178417176 + AluSc SINE Alu 36 307 -2 382 341 46 102 chr4 23911171 23911263 -178417084 + L2 LINE L2 3175 3271 -1 304 267 86 91 chr4 23911729 23911916 -178416431 + MIR3 SINE MIR 4 189 -19 224 371 0 0 chr4 23912265 23912354 -178415993 + MIR3 SINE MIR 111 199 -9 454 303 58 11 chr4 23912493 23912681 -178415666 - MIR SINE MIR -55 207 11 307 326 137 33 chr4 23912706 23912930 -178415417 + MIR SINE MIR 3 247 -15 257 337 151 6 chr4 23914449 23914615 -178413732 - MIR SINE MIR -5 257 68 * 309 374 77 32 chr4 23914611 23914857 -178413490 - MIR SINE MIR 0 262 6 2286 112 0 0 chr4 23915017 23915320 -178413027 + AluSx SINE Alu 1 303 -9 407 250 95 43 chr4 23915893 23916125 -178412222 + MIR SINE MIR 19 262 0 216 296 194 9 chr4 23916284 23916392 -178411955 - L2 LINE L2 -21 3251 3124 193 379 40 23 chr4 23920177 23920351 -178407996 - MIR3 SINE MIR -3 205 29 243 0 0 0 chr4 23920516 23920543 -178407804 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1433 194 15 7 chr4 23920552 23920825 -178407522 - AluJo SINE Alu -37 275 1 182 84 21 95 chr4 23921555 23921650 -178406697 + (TTATA)n Simple_repeat Simple_repeat 4 91 0 3573 109 19 58 chr4 23922643 23923267 -178405080 + MER4A LTR ERV1 1 600 0 4072 68 18 4 chr4 23923268 23923814 -178404533 - MER41A LTR ERV1 0 554 1 12438 98 44 10 chr4 23923814 23926236 -178402111 - MER41A-int LTR ERV1 -2 5944 2660 1863 122 14 0 chr4 23926237 23926525 -178401822 - L1P LINE L1 -3364 2782 2491 * 3201 92 8 0 chr4 23926513 23926994 -178401353 + L1P LINE L1 2786 3270 -2876 7121 96 38 0 chr4 23927094 23928143 -178400204 + L1P LINE L1 3942 5030 -1116 9185 87 69 44 chr4 23928143 23929449 -178398898 - HUERS-P1 LTR ERV1 -2919 3177 1905 253 271 17 0 chr4 23929449 23929508 -178398839 - tRNA-Glu-GAG tRNA tRNA -13 62 3 9185 87 69 44 chr4 23929508 23929726 -178398621 - HUERS-P1 LTR ERV1 -4191 1905 1694 2289 104 0 3 chr4 23929726 23930034 -178398313 - AluSg SINE Alu 0 310 4 9185 87 69 44 chr4 23930034 23930446 -178397901 - HUERS-P1 LTR ERV1 -4402 1694 941 5539 124 54 1 chr4 23930432 23931260 -178397087 - MER41A-int LTR ERV1 -5072 874 3 * 4021 96 4 0 chr4 23931349 23931899 -178396448 - MER41A LTR ERV1 -2 552 1 728 239 13 13 chr4 23932262 23932421 -178395926 - MLT1J2 LTR MaLR -254 196 38 1403 228 134 93 chr4 23932677 23933430 -178394917 - LTR1B LTR ERV1 -42 784 1 686 163 23 47 chr4 23933431 23933603 -178394744 - L1 LINE L1 -1586 4560 4393 950 259 137 21 chr4 23933838 23934832 -178393515 - L1ME3 LINE L1 -14 6148 4961 4222 206 70 12 chr4 23934839 23934951 -178393396 - L1 LINE L1 -1351 4795 4691 1658 192 20 47 chr4 23934951 23935352 -178392995 - MLT1B LTR MaLR 0 390 1 4222 206 70 12 chr4 23935352 23936261 -178392086 - L1 LINE L1 -1455 4691 3714 1526 280 80 22 chr4 23936280 23937214 -178391133 - L1ME3 LINE L1 -2115 4031 3035 387 0 0 0 chr4 23937214 23937257 -178391090 + (TA)n Simple_repeat Simple_repeat 1 43 0 1526 280 80 22 chr4 23937257 23937316 -178391031 - L1ME3 LINE L1 -3111 3035 2981 216 0 0 0 chr4 23937413 23937436 -178390911 + (TG)n Simple_repeat Simple_repeat 1 47 0 216 0 0 0 chr4 23937436 23937460 -178390887 + (TG)n Simple_repeat Simple_repeat 2 25 0 1714 180 0 3 chr4 23937484 23937767 -178390580 - AluJo SINE Alu -24 288 7 304 308 60 0 chr4 23938249 23938382 -178389965 + L1MEd LINE L1 228 368 -5751 977 168 67 10 chr4 23938890 23939099 -178389248 - L1P LINE L1 -3682 2464 2244 1767 169 203 17 chr4 23940367 23940786 -178387561 + MLT1D LTR MaLR 1 497 -8 1237 141 60 136 chr4 23941295 23941714 -178386633 + MLT1B LTR MaLR 4 390 0 207 220 0 0 chr4 23941763 23941813 -178386534 + CT-rich Low_complexity Low_complexity 3 52 0 262 278 0 0 chr4 23941977 23942039 -178386308 + MLT1I LTR MaLR 83 144 -265 702 267 187 30 chr4 23942039 23942402 -178385945 - MLT1H LTR MaLR 0 549 130 2088 105 39 20 chr4 23942511 23942949 -178385398 - L1P4 LINE L1 -569 5597 5152 7496 125 22 37 chr4 23942949 23944674 -178383673 - L1P3 LINE L1 -4480 1666 12 297 293 0 0 chr4 23945071 23945170 -178383177 - L1PA12 LINE L1 -5399 2182 2084 759 332 32 45 chr4 23945255 23945873 -178382474 - L1PA12 LINE L1 -6177 1397 788 1347 282 88 49 chr4 23945876 23946624 -178381723 - L1MEc LINE L1 -3053 3162 2394 2144 123 10 3 chr4 23946624 23946926 -178381421 - AluSc SINE Alu -5 304 1 1347 282 88 49 chr4 23946926 23947302 -178381045 - L1MEc LINE L1 -3821 2394 2034 4628 101 55 1 chr4 23947307 23948033 -178380314 - L1PA14 LINE L1 -1 6160 5396 4407 191 18 8 chr4 23948030 23951236 -178377111 - L1PA12 LINE L1 -3549 4035 201 * 340 200 0 0 chr4 23951247 23951312 -178377035 - L1PA12 LINE L1 -7516 65 1 1349 302 88 54 chr4 23951329 23952074 -178376273 - L1MEc LINE L1 -4376 2020 1302 1544 203 58 0 chr4 23952074 23952369 -178375978 - AluJb SINE Alu 0 312 1 1349 302 88 54 chr4 23952369 23952666 -178375681 - L1MEc LINE L1 -5094 1302 1017 518 183 0 10 chr4 23952666 23952770 -178375577 - U13 snRNA snRNA -1 103 1 1349 302 88 54 chr4 23952770 23952792 -178375555 - L1MEc LINE L1 -5379 1017 997 2007 134 7 7 chr4 23952792 23953082 -178375265 - AluSx SINE Alu -22 290 1 1349 302 88 54 chr4 23953082 23953913 -178374434 - L1MEc LINE L1 -5399 997 58 2582 157 7 5 chr4 23955472 23955899 -178372448 - MSTA LTR MaLR 0 428 1 341 288 96 59 chr4 23956246 23956517 -178371830 + MLT1H LTR MaLR 78 358 -191 230 259 12 35 chr4 23957075 23957160 -178371187 + MLT1J LTR MaLR 380 462 -49 203 373 85 0 chr4 23957537 23957655 -178370692 - L2 LINE L2 -4 3309 3182 23 54 0 0 chr4 23958275 23958312 -178370035 + AT_rich Low_complexity Low_complexity 1 37 0 198 264 0 19 chr4 23958430 23958483 -178369864 - L2 LINE L2 -5 3267 3216 1392 217 46 73 chr4 23958670 23959150 -178369197 - MLT1C LTR MaLR 0 467 1 333 277 18 27 chr4 23959403 23959515 -178368832 + MIR SINE MIR 97 207 -55 183 367 58 36 chr4 23959844 23959983 -178368364 + L3 LINE CR1 57 198 -1379 1187 42 0 0 chr4 23960067 23960211 -178368136 - L1PA7 LINE L1 -3 6151 6008 228 67 0 0 chr4 23960215 23960245 -178368102 + (TA)n Simple_repeat Simple_repeat 2 31 0 6094 100 28 1 chr4 23960245 23961154 -178367193 - HERVL-A2 LTR ERVL -4080 1574 642 3066 111 6 8 chr4 23961254 23961733 -178366614 - HERVL-A2 LTR ERVL -5176 478 1 303 164 0 0 chr4 23961733 23961788 -178366559 - MLT2A2 LTR ERVL 0 453 399 297 0 0 0 chr4 23961828 23961861 -178366486 + (TG)n Simple_repeat Simple_repeat 2 34 0 2313 120 2 40 chr4 23961902 23962302 -178366045 + Tigger2 DNA MER2_type 2334 2718 0 322 104 0 0 chr4 23962303 23962351 -178365996 + MLT1H LTR MaLR 326 373 -17 4428 65 41 5 chr4 23962351 23962940 -178365407 + LTR66 LTR ERVL 1 610 0 7669 90 33 0 chr4 23962940 23964034 -178364313 + HERVL66 LTR ERVL 1 1130 -3199 2451 89 40 0 chr4 23964034 23964382 -178363965 + HERVL66 LTR ERVL 1436 1797 -2532 * 4535 111 31 7 chr4 23964363 23965045 -178363302 + HERVL66 LTR ERVL 2655 3352 -977 2634 140 12 2 chr4 23965043 23965471 -178362876 + HERVL66 LTR ERVL 3569 4000 -329 * 2286 38 0 0 chr4 23965471 23965762 -178362585 - L1PA5 LINE L1 -888 5258 4968 7092 45 15 0 chr4 23965762 23966632 -178361715 + L1PA5 LINE L1 5269 6153 -1 914 86 91 3 chr4 23966651 23966888 -178361459 + HERVL66 LTR ERVL 3988 4329 0 4582 66 34 0 chr4 23966888 23967478 -178360869 + LTR66 LTR ERVL 1 610 0 286 324 43 53 chr4 23967624 23967831 -178360516 + L3 LINE CR1 1343 1547 -30 6382 128 29 29 chr4 23967895 23969004 -178359343 - Tigger3b DNA MER2_type -1797 1231 122 1956 159 130 16 chr4 23969004 23969388 -178358959 - MSTA LTR MaLR 0 428 1 6382 128 29 29 chr4 23969388 23969467 -178358880 - Tigger3b DNA MER2_type -2906 122 44 2047 176 24 52 chr4 23969467 23970001 -178358346 - LTR27 LTR ERV1 0 501 12 301 158 50 45 chr4 23970057 23970141 -178358206 - L1MD3 LINE L1 -29 7963 7676 275 245 0 0 chr4 23970274 23970327 -178358020 - AluJ/monomer SINE Alu -246 53 1 193 171 24 24 chr4 23972467 23972508 -178355839 - MER5A DNA MER1_type -22 167 127 2543 144 2 0 chr4 23972508 23972911 -178355436 + L1PA16 LINE L1 5760 6163 -3 321 100 0 0 chr4 23972952 23973002 -178355345 + (CA)n Simple_repeat Simple_repeat 1 50 0 346 308 33 17 chr4 23973017 23973137 -178355210 + MER5A DNA MER1_type 68 189 0 674 289 71 42 chr4 23973838 23974077 -178354270 + MIR SINE MIR 3 248 -14 1796 188 0 3 chr4 23974904 23975196 -178353151 - AluJb SINE Alu -21 291 1 496 316 113 1 chr4 23975731 23975936 -178352411 - MIR SINE MIR -1 261 36 628 314 28 48 chr4 23976320 23976673 -178351674 + LTR16A1 LTR ERVL 107 452 -5 1432 169 157 27 chr4 23977736 23978175 -178350172 + LTR54B LTR ERV1 1 496 -2 901 239 50 5 chr4 23978712 23978913 -178349434 - MIR SINE MIR -27 235 26 2711 81 17 0 chr4 23978973 23979331 -178349016 - THE1B LTR MaLR 0 364 1 644 273 104 7 chr4 23979466 23979755 -178348592 - MLT1K LTR MaLR -33 555 239 433 138 88 0 chr4 23979958 23980038 -178348309 + MLT1A2 LTR MaLR 288 374 0 299 278 50 0 chr4 23980441 23980589 -178347758 + L1M4 LINE L1 3864 4018 -2128 557 240 120 20 chr4 23980826 23981076 -178347271 - MER110A LTR ERV1 -23 445 171 1631 197 3 10 chr4 23981419 23981718 -178346629 + AluJo SINE Alu 1 297 -15 2124 124 0 0 chr4 23982143 23982453 -178345894 - AluSg SINE Alu 0 310 1 1099 210 89 46 chr4 23983045 23983393 -178344954 - MLT1A1 LTR MaLR -2 363 1 1286 133 0 10 chr4 23983756 23983951 -178344396 + AluSg/x SINE Alu 119 311 -1 533 161 42 17 chr4 23984759 23984877 -178343470 - MER31-int LTR ERV1 -3902 1034 914 848 218 66 73 chr4 23985507 23985810 -178342537 + MER58B DNA MER1_type 40 340 -1 594 331 112 60 chr4 23986544 23986658 -178341689 + L2 LINE L2 2011 2118 -1196 2090 126 33 0 chr4 23986658 23986959 -178341388 + AluSx SINE Alu 1 311 -1 594 331 112 60 chr4 23986959 23987565 -178340782 + L2 LINE L2 2118 2790 -524 2353 99 0 3 chr4 23987565 23987869 -178340478 - AluSx SINE Alu -9 303 1 594 331 112 60 chr4 23987869 23988058 -178340289 + L2 LINE L2 2790 2968 -346 727 39 19 0 chr4 23988986 23989089 -178339258 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 1987 137 8 48 chr4 23989546 23989919 -178338428 - MER34B LTR ERV1 -207 358 1 444 255 10 75 chr4 23991360 23991560 -178336787 - L2 LINE L2 0 3313 3127 434 69 0 42 chr4 23991720 23991792 -178336555 + L1MC2 LINE L1 6265 6333 -11 313 179 26 26 chr4 23991944 23992022 -178336325 + MLT1J LTR MaLR 416 493 -18 218 225 0 0 chr4 23993654 23993694 -178334653 + L2 LINE L2 3021 3060 -253 23889 29 1 3 chr4 23993853 23997333 -178331014 - L1PA3 LINE L1 -3 6152 2679 2053 140 0 19 chr4 23997337 23997651 -178330696 - AluSx SINE Alu -4 308 1 423 233 8 54 chr4 23997718 23997847 -178330500 + L2 LINE L2 3191 3313 0 344 239 0 0 chr4 23998448 23998519 -178329828 + L2 LINE L2 3242 3312 -1 282 125 0 0 chr4 23998548 23998596 -178329751 + (TG)n Simple_repeat Simple_repeat 2 49 0 266 222 111 65 chr4 23998812 23998920 -178329427 + MIR SINE MIR 131 243 -19 948 144 17 46 chr4 23999553 23999726 -178328621 - THE1B LTR MaLR 0 364 197 351 25 0 0 chr4 23999721 23999761 -178328586 - THE1B LTR MaLR -324 40 1 * 11855 105 17 2 chr4 23999761 24001318 -178327029 - THE1B-int LTR MaLR 0 1580 1 2400 131 13 40 chr4 24001318 24001692 -178326655 - THE1B LTR MaLR 0 364 1 566 308 73 49 chr4 24002047 24002294 -178326053 - MIR SINE MIR -1 261 9 459 308 157 48 chr4 24003001 24003504 -178324843 - L2 LINE L2 -337 2977 2420 240 351 21 0 chr4 24004029 24004123 -178324224 + L2 LINE L2 3208 3303 -10 22 0 0 0 chr4 24004192 24004214 -178324133 + AT_rich Low_complexity Low_complexity 1 22 0 245 308 26 68 chr4 24004589 24004706 -178323641 + MIR SINE MIR 21 132 -76 356 361 77 52 chr4 24005086 24005452 -178322895 - L2 LINE L2 -8 3264 2890 219 346 10 10 chr4 24005629 24005733 -178322614 - L2 LINE L2 -279 2993 2890 371 325 31 31 chr4 24006215 24006409 -178321938 + MIR SINE MIR 57 250 -12 1997 116 0 11 chr4 24007647 24007967 -178320380 + AluSx SINE Alu 1 317 0 3407 65 8 5 chr4 24008562 24009057 -178319290 - L1P3 LINE L1 -477 5695 5200 677 294 21 61 chr4 24009354 24009680 -178318667 - L2 LINE L2 0 3313 3001 189 176 149 54 chr4 24010650 24010724 -178317623 + L3 LINE CR1 591 671 -906 378 42 0 0 chr4 24010761 24010809 -178317538 + (TG)n Simple_repeat Simple_repeat 1 48 0 248 348 18 9 chr4 24011024 24011136 -178317211 + MIR SINE MIR 80 192 -70 1315 262 95 46 chr4 24011473 24011947 -178316400 + MLT1D LTR MaLR 5 501 -4 185 292 97 35 chr4 24012843 24012956 -178315391 - MIR SINE MIR -31 231 112 396 347 61 52 chr4 24012974 24013073 -178315274 + L2 LINE L2 2842 2939 -333 841 247 27 45 chr4 24013073 24013296 -178315051 + MER20 DNA MER1_type 1 219 0 396 347 61 52 chr4 24013296 24013622 -178314725 + L2 LINE L2 2939 3271 -1 8623 136 11 4 chr4 24013719 24015957 -178312390 + L1PA11 LINE L1 3879 6133 -41 240 35 0 0 chr4 24015973 24016002 -178312345 + (CA)n Simple_repeat Simple_repeat 2 30 0 410 216 0 144 chr4 24017629 24017782 -178310565 + MER69 DNA AcHobo 5 135 -2391 377 171 24 49 chr4 24017782 24017864 -178310483 + MER69 DNA AcHobo 2447 2526 0 21 0 0 0 chr4 24017874 24017895 -178310452 + AT_rich Low_complexity Low_complexity 1 21 0 1742 232 52 52 chr4 24017895 24018400 -178309947 + MLT1D LTR MaLR 1 505 0 755 286 98 47 chr4 24018645 24019673 -178308674 - L1M4 LINE L1 -1544 4602 3522 2702 87 50 8 chr4 24019979 24020336 -178308011 - THE1C LTR MaLR 0 375 4 10708 120 48 4 chr4 24020339 24021852 -178306495 - THE1C-int LTR MaLR 0 1580 1 1816 82 9 0 chr4 24021852 24022083 -178306264 - THE1C LTR MaLR 0 375 143 267 213 62 12 chr4 24023666 24023746 -178304601 - MER41C LTR ERV1 -470 84 1 186 163 70 23 chr4 24023767 24023810 -178304537 - MER5A DNA MER1_type -35 154 110 1694 183 3 10 chr4 24024172 24024467 -178303880 + AluJo SINE Alu 1 293 -19 193 314 58 22 chr4 24024824 24024961 -178303386 + L2 LINE L2 3116 3257 -56 22 0 0 0 chr4 24025227 24025249 -178303098 + GC_rich Low_complexity Low_complexity 1 22 0 402 273 16 16 chr4 24026981 24027102 -178301245 + FRAM SINE Alu 41 161 -15 1876 132 6 22 chr4 24027102 24027420 -178300927 + AluSq SINE Alu 1 313 0 2370 89 0 10 chr4 24027480 24027794 -178300553 + AluSx SINE Alu 1 311 -1 208 274 0 32 chr4 24079836 24079898 -178248449 - MIR SINE MIR -28 234 175 4379 35 17 0 chr4 24080506 24080988 -178247359 - LTR2B LTR ERV1 0 490 1 24681 114 9 12 chr4 24080988 24084556 -178243791 - Harlequin LTR ERV1 0 6896 3342 3296 82 25 23 chr4 24084551 24085245 -178243102 - Harlequin LTR ERV1 -2313 3273 1572 * 4890 61 8 14 chr4 24085239 24085874 -178242473 - Harlequin LTR ERV1 -6004 892 262 2531 114 5 0 chr4 24085869 24086247 -178242100 - Harlequin LTR ERV1 -6516 380 1 * 4296 35 21 0 chr4 24086247 24086726 -178241621 - LTR2B LTR ERV1 0 490 2 820 251 33 5 chr4 24086739 24086954 -178241393 + LTR16C LTR ERVL 254 474 -17 5477 131 42 47 chr4 24087235 24088209 -178240138 + LTR5 LTR ERVK 1 969 0 516 133 0 0 chr4 24088246 24088329 -178240018 + (CA)n Simple_repeat Simple_repeat 2 84 0 201 385 37 9 chr4 24088870 24088979 -178239368 + MIR SINE MIR 29 140 -68 200 350 0 10 chr4 24089489 24089592 -178238755 + T-rich Low_complexity Low_complexity 3 104 0 555 308 6 6 chr4 24089815 24089987 -178238360 - MIR SINE MIR -90 172 1 335 244 130 16 chr4 24090068 24090191 -178238156 + MIR3 SINE MIR 9 145 -63 329 277 90 58 chr4 24090478 24090633 -178237714 + L2 LINE L2 3108 3267 -5 183 296 34 23 chr4 24091089 24091177 -178237170 + L2 LINE L2 2269 2357 -957 2048 147 3 3 chr4 24092961 24093273 -178235074 + AluSx SINE Alu 1 312 0 219 69 0 0 chr4 24094117 24094146 -178234201 + (CA)n Simple_repeat Simple_repeat 2 30 0 2353 179 4 21 chr4 24095439 24095453 -178232894 - L1 LINE L1 -757 5389 5376 845 168 24 0 chr4 24095453 24095620 -178232727 - L1MA8 LINE L1 -2 6289 6119 2353 179 4 21 chr4 24095620 24096125 -178232222 - L1 LINE L1 -770 5376 4879 1539 204 99 13 chr4 24096175 24096799 -178231548 - SATR1 Satellite Satellite -95 677 1 1975 213 107 7 chr4 24096829 24097472 -178230875 - SATR1 Satellite Satellite -1 707 1 405 168 0 67 chr4 24097479 24097658 -178230689 + (TTA)n Simple_repeat Simple_repeat 1 167 0 270 272 11 33 chr4 24097693 24097877 -178230470 + (TTA)n Simple_repeat Simple_repeat 1 180 0 2137 183 97 13 chr4 24097904 24100369 -178227978 + SATR1 Satellite Satellite 1 2670 -99 2456 182 23 8 chr4 24100569 24101047 -178227300 - MER31A LTR ERV1 0 485 1 2156 103 3 3 chr4 24101578 24101868 -178226479 + AluSq SINE Alu 12 301 -12 2375 159 14 30 chr4 24102793 24103234 -178225113 - Tigger2a DNA MER2_type 0 434 1 2429 204 40 72 chr4 24103319 24104130 -178224217 - LTR1 LTR ERV1 0 785 1 2177 121 7 0 chr4 24104148 24104454 -178223893 + AluSx SINE Alu 1 308 -4 7482 31 0 0 chr4 24105080 24106063 -178222284 - L1PA5 LINE L1 0 6154 5163 223 108 43 43 chr4 24106530 24106623 -178221724 + (TA)n Simple_repeat Simple_repeat 1 93 0 361 236 40 11 chr4 24106670 24106831 -178221516 + (TA)n Simple_repeat Simple_repeat 2 170 -10 480 108 0 36 chr4 24106831 24106914 -178221433 + MADE1 DNA Mariner 1 80 0 361 236 40 11 chr4 24106914 24106926 -178221421 + (TA)n Simple_repeat Simple_repeat 170 180 0 497 257 99 0 chr4 24107202 24107373 -178220974 - L1MC4 LINE L1 -1040 7002 6815 218 197 45 0 chr4 24108051 24108117 -178220230 + (TA)n Simple_repeat Simple_repeat 2 70 0 4282 158 22 38 chr4 24108623 24108674 -178219673 - L1MB3 LINE L1 -1 6182 6132 2191 138 3 0 chr4 24108674 24108985 -178219362 - AluSx SINE Alu 0 312 1 4282 158 22 38 chr4 24108985 24109820 -178218527 - L1MB3 LINE L1 -51 6132 5308 1195 244 77 6 chr4 24110341 24110549 -178217798 - MLT1B LTR MaLR 0 390 198 426 20 0 0 chr4 24110549 24110600 -178217747 + (TC)n Simple_repeat Simple_repeat 2 52 0 1195 244 77 6 chr4 24110600 24110755 -178217592 - MLT1B LTR MaLR -192 198 1 218 303 131 10 chr4 24111357 24111456 -178216891 + L2 LINE L2 3158 3268 -4 321 238 50 0 chr4 24112035 24112115 -178216232 - MIR SINE MIR -71 191 108 1783 228 2 0 chr4 24112851 24113285 -178215062 - L1MB3 LINE L1 -2092 4054 3620 859 285 131 65 chr4 24114251 24114710 -178213637 + L2 LINE L2 2820 3308 -5 654 296 57 4 chr4 24114727 24114957 -178213390 - MIR SINE MIR -1 261 20 1199 202 34 43 chr4 24118289 24118616 -178209731 + MER33 DNA MER1_type 1 324 0 2163 123 123 5 chr4 24118708 24119091 -178209256 + MSTA LTR MaLR 1 428 0 212 330 103 10 chr4 24119271 24119368 -178208979 + MIR SINE MIR 74 179 -83 231 227 45 15 chr4 24119429 24119495 -178208852 - MIR SINE MIR -24 238 171 394 323 41 50 chr4 24119533 24119753 -178208594 - MIR SINE MIR -31 231 14 387 252 37 9 chr4 24120207 24120314 -178208033 - MIR3 SINE MIR -2 206 97 1519 186 90 29 chr4 24120741 24121085 -178207262 - MLT1A1 LTR MaLR 0 365 1 22 88 0 0 chr4 24122026 24122083 -178206264 + AT_rich Low_complexity Low_complexity 1 57 0 861 207 31 47 chr4 24123092 24123285 -178205062 + MIR SINE MIR 49 238 -24 663 307 40 9 chr4 24123247 24123475 -178204872 - MIR SINE MIR -16 246 12 * 2429 76 0 0 chr4 24123623 24123927 -178204420 + AluSc SINE Alu 1 304 -5 189 276 11 46 chr4 24125233 24125320 -178203027 + L2 LINE L2 2301 2384 -930 503 174 18 0 chr4 24125320 24125429 -178202918 + MLT1C LTR MaLR 199 309 -158 858 218 52 65 chr4 24125430 24125737 -178202610 - MLT1A1 LTR MaLR 0 365 63 1435 81 187 8 chr4 24125737 24126010 -178202337 + AluSg1 SINE Alu 3 317 0 828 167 19 25 chr4 24126060 24126222 -178202125 + MLT1C LTR MaLR 307 467 0 305 360 85 9 chr4 24126233 24126323 -178202024 + L2 LINE L2 2392 2474 -840 411 21 0 0 chr4 24126323 24126371 -178201976 + (CA)n Simple_repeat Simple_repeat 2 49 0 305 360 85 9 chr4 24126371 24126491 -178201856 + L2 LINE L2 2474 2618 -696 612 319 48 42 chr4 24126513 24126894 -178201453 + L2 LINE L2 2724 3105 -208 355 319 34 17 chr4 24126942 24127061 -178201286 - L2 LINE L2 -15 3257 3137 488 302 6 19 chr4 24127090 24127249 -178201098 + L2 LINE L2 3156 3312 -1 980 278 141 16 chr4 24127951 24128445 -178199902 + MLT1F1 LTR MaLR 3 556 -11 184 279 115 77 chr4 24128834 24128938 -178199409 + MIR SINE MIR 38 145 -63 42092 39 1 0 chr4 24129664 24135811 -178192536 + L1PA4 LINE L1 2 6155 0 305 349 115 0 chr4 24136545 24136754 -178191593 + LTR33 LTR ERVL 7 239 -282 1045 230 72 24 chr4 24136777 24137112 -178191235 - L1ME2 LINE L1 -20 6144 5794 304 278 87 0 chr4 24137180 24137295 -178191052 + LTR33 LTR ERVL 393 517 -4 1051 205 151 51 chr4 24137377 24137709 -178190638 - MLT1A1 LTR MaLR 0 365 1 474 209 134 59 chr4 24137898 24138204 -178190143 - L1ME4a LINE L1 -2 6119 5791 22 0 0 0 chr4 24139557 24139579 -178188768 + AT_rich Low_complexity Low_complexity 1 22 0 2233 119 39 30 chr4 24139593 24139954 -178188393 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr4 24139955 24139978 -178188369 + AT_rich Low_complexity Low_complexity 1 23 0 264 317 30 0 chr4 24140035 24140136 -178188211 - MIR3 SINE MIR 0 208 105 238 302 0 62 chr4 24140918 24141014 -178187333 + MIR3 SINE MIR 84 154 -54 226 250 52 73 chr4 24141457 24141553 -178186794 - MIR SINE MIR -13 249 156 222 386 43 57 chr4 24142140 24142350 -178185997 - L2 LINE L2 -42 3230 3024 732 280 57 5 chr4 24144760 24145007 -178183340 + MIR SINE MIR 4 261 -1 917 280 137 55 chr4 24145024 24145712 -178182635 - L2 LINE L2 -5 3308 2542 447 237 111 18 chr4 24145868 24146063 -178182284 + MIR3 SINE MIR 1 211 -51 719 248 52 97 chr4 24146234 24146607 -178181740 - MLT1C LTR MaLR -67 400 45 1538 149 126 0 chr4 24146607 24146868 -178181479 + AluJb SINE Alu 1 294 -8 719 248 52 97 chr4 24146868 24146897 -178181450 - MLT1C LTR MaLR -422 45 16 186 384 68 0 chr4 24148031 24148104 -178180243 + L2 LINE L2 3109 3186 -86 213 298 18 0 chr4 24148195 24148252 -178180095 - L2 LINE L2 -221 3051 2994 250 253 13 13 chr4 24148404 24148483 -178179864 - LTR33A LTR ERVL -1 522 444 2405 48 41 0 chr4 24149377 24149672 -178178675 - AluY SINE Alu -4 307 1 211 322 0 0 chr4 24149825 24149915 -178178432 + (TAA)n Simple_repeat Simple_repeat 1 90 0 488 208 0 21 chr4 24150101 24150197 -178178150 + MIR SINE MIR 59 152 -110 792 131 66 0 chr4 24150236 24150358 -178177989 + FLAM_C SINE Alu 3 132 -1 251 54 27 0 chr4 24150419 24150456 -178177891 + (TC)n Simple_repeat Simple_repeat 1 38 0 225 128 43 0 chr4 24150525 24150572 -178177775 + L2 LINE L2 3265 3313 0 780 243 66 21 chr4 24152303 24152685 -178175662 - LTR50 LTR ERVL -344 451 2 257 122 0 0 chr4 24152931 24152972 -178175375 + AluSc SINE Alu 249 289 -10 465 300 19 71 chr4 24152990 24153055 -178175292 + MIR SINE MIR 47 114 -148 2263 102 0 7 chr4 24153055 24153359 -178174988 - AluSq SINE Alu -11 302 1 465 300 19 71 chr4 24153359 24153503 -178174844 + MIR SINE MIR 114 245 -17 998 264 88 6 chr4 24153559 24153889 -178174458 + MLT1J LTR MaLR 1 357 -154 213 211 0 0 chr4 24153989 24154027 -178174320 - L2 LINE L2 -84 3229 3192 249 265 140 37 chr4 24154054 24154190 -178174157 - MLT1L LTR MaLR 0 615 466 243 191 0 0 chr4 24154232 24154279 -178174068 - MLT1L LTR MaLR -224 391 345 578 124 0 48 chr4 24154279 24154384 -178173963 + MSTA LTR MaLR 1 100 -328 2032 157 29 39 chr4 24154391 24154950 -178173397 - MLT2A2 LTR ERVL -3 551 1 1224 144 115 43 chr4 24154960 24155238 -178173109 + MSTA LTR MaLR 131 428 0 234 0 0 0 chr4 24155546 24155572 -178172775 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2289 57 7 3 chr4 24155576 24155859 -178172488 - AluY SINE Alu -27 284 1 309 308 5 120 chr4 24156869 24156999 -178171348 - MER5A DNA MER1_type -5 184 85 2247 73 0 53 chr4 24156999 24157302 -178171045 - AluY SINE Alu -24 287 1 309 308 5 120 chr4 24157302 24157379 -178170968 - MER5A DNA MER1_type -104 85 1 2635 91 11 0 chr4 24157627 24157978 -178170369 - THE1A LTR MaLR 0 355 1 247 297 11 11 chr4 24158467 24158558 -178169789 + GA-rich Low_complexity Low_complexity 1 91 0 1998 142 0 25 chr4 24159563 24159880 -178168467 - AluSx SINE Alu -3 309 1 522 303 0 37 chr4 24160569 24160757 -178167590 + MIR SINE MIR 82 262 0 333 0 0 0 chr4 24162213 24162250 -178166097 + (CA)n Simple_repeat Simple_repeat 1 37 0 23 0 0 0 chr4 24162386 24162409 -178165938 + AT_rich Low_complexity Low_complexity 1 23 0 273 266 151 7 chr4 24162418 24162557 -178165790 - L1ME4a LINE L1 -3 6118 5960 249 266 202 9 chr4 24162679 24162788 -178165559 + L2 LINE L2 3184 3313 0 305 311 60 33 chr4 24163378 24163561 -178164786 - L1ME4a LINE L1 -267 5854 5667 336 298 71 15 chr4 24163578 24163776 -178164571 - L1ME4a LINE L1 -507 5614 5406 241 327 103 9 chr4 24163974 24164081 -178164266 - L2 LINE L2 -8 3305 3189 544 267 93 13 chr4 24164357 24164590 -178163757 + MIR SINE MIR 6 253 -9 357 82 0 0 chr4 24165444 24165493 -178162854 + (TC)n Simple_repeat Simple_repeat 1 49 0 575 192 30 84 chr4 24166006 24166209 -178162138 + L1PBa LINE L1 3 194 -6669 12392 117 97 4 chr4 24166215 24168869 -178159478 + L1PBa LINE L1 636 3538 -3324 352 96 19 0 chr4 24168877 24168929 -178159418 - MER4A LTR ERV1 -351 313 261 565 141 0 10 chr4 24168929 24169028 -178159319 - MER4A LTR ERV1 -566 98 1 203 250 0 0 chr4 24171273 24171313 -178157034 + polypyrimidine Low_complexity Low_complexity 1 40 0 211 309 221 49 chr4 24171457 24171661 -178156686 - L2 LINE L2 -250 3063 2825 2218 91 0 23 chr4 24172737 24173046 -178155301 + AluSq SINE Alu 1 302 -11 327 301 39 10 chr4 24173199 24173302 -178155045 + MIR SINE MIR 43 148 -60 1155 289 25 17 chr4 24173308 24173665 -178154682 + MER69 DNA AcHobo 276 635 -591 593 197 86 45 chr4 24173651 24173895 -178154452 - MER69 DNA AcHobo -788 1738 1485 * 466 300 74 26 chr4 24174277 24174467 -178153880 + MIR3 SINE MIR 5 203 -5 255 140 0 0 chr4 24175471 24175521 -178152826 + (GA)n Simple_repeat Simple_repeat 1 50 0 266 232 0 0 chr4 24175592 24175648 -178152699 - L2 LINE L2 -1 3271 3216 239 296 112 20 chr4 24175676 24175774 -178152573 + L2 LINE L2 3161 3267 -5 375 149 201 30 chr4 24175970 24176104 -178152243 + MER103 DNA DNA 3 159 -7 313 328 25 25 chr4 24176231 24176353 -178151994 - L3 LINE CR1 -113 1464 1343 562 264 124 6 chr4 24176362 24176540 -178151807 + MER58C DNA MER1_type 1 199 -16 2084 157 0 0 chr4 24176639 24176945 -178151402 + AluSx SINE Alu 1 306 -6 252 222 0 0 chr4 24176956 24177010 -178151337 + MLT1F1 LTR MaLR 39 92 -501 330 185 0 0 chr4 24177021 24177102 -178151245 + (CATCC)n Simple_repeat Simple_repeat 3 83 0 1160 225 79 98 chr4 24177127 24177598 -178150749 + MLT1F1 LTR MaLR 106 567 0 240 35 0 0 chr4 24177673 24177702 -178150645 + (TA)n Simple_repeat Simple_repeat 1 29 0 1838 174 73 13 chr4 24177776 24178225 -178150122 - L1MA9 LINE L1 0 6312 5837 2122 151 21 0 chr4 24178232 24178615 -178149732 - L1MA9 LINE L1 -653 5659 5269 247 314 17 8 chr4 24178616 24178734 -178149613 - Charlie7 DNA MER1_type -2492 120 2 2418 98 3 0 chr4 24180360 24180666 -178147681 - AluSp SINE Alu -6 307 1 502 324 39 0 chr4 24180707 24180886 -178147461 - MIR SINE MIR -59 203 18 227 30 0 30 chr4 24181707 24181740 -178146607 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 761 230 12 0 chr4 24182378 24182543 -178145804 + MER5A DNA MER1_type 23 189 0 21 36 0 0 chr4 24183347 24183375 -178144972 + AT_rich Low_complexity Low_complexity 1 28 0 11389 217 41 14 chr4 24183376 24185441 -178142906 - L1MA9 LINE L1 -40 7293 5285 2030 167 64 33 chr4 24185441 24185861 -178142486 + Tigger2a DNA MER2_type 2 434 0 11389 217 41 14 chr4 24185861 24186336 -178142011 - L1MA9 LINE L1 -2048 5285 4824 2386 148 57 7 chr4 24186336 24186741 -178141606 + MSTA LTR MaLR 4 428 0 11389 217 41 14 chr4 24186741 24188280 -178140067 - L1MA9 LINE L1 -2509 4824 3089 7096 268 37 16 chr4 24188270 24191059 -178137288 - L1MA9 LINE L1 -4317 2851 7 * 319 339 16 16 chr4 24191158 24191285 -178137062 + L2 LINE L2 3187 3313 0 213 309 32 0 chr4 24191306 24191400 -178136947 + GA-rich Low_complexity Low_complexity 1 97 0 2141 134 21 19 chr4 24192858 24193231 -178135116 - THE1C LTR MaLR 0 375 2 374 337 54 22 chr4 24193788 24193972 -178134375 - MIR SINE MIR -10 252 63 602 285 12 12 chr4 24194419 24194591 -178133756 + MIR SINE MIR 32 203 -59 1780 157 33 12 chr4 24194800 24194946 -178133401 + L1M2 LINE L1 5450 5591 -700 6260 55 0 4 chr4 24194946 24195729 -178132618 + L1PA7 LINE L1 5374 6153 -1 1780 157 33 12 chr4 24195729 24195919 -178132428 + L1M2 LINE L1 5591 5793 -498 189 178 0 0 chr4 24195919 24195964 -178132383 + (TA)n Simple_repeat Simple_repeat 2 46 0 1492 207 43 41 chr4 24195964 24196490 -178131857 + L1MA6 LINE L1 5745 6296 -4 333 0 0 0 chr4 24196822 24196859 -178131488 + (TG)n Simple_repeat Simple_repeat 2 38 0 921 198 63 16 chr4 24196940 24197193 -178131154 - L1MD3 LINE L1 -10 7985 7721 6781 143 40 13 chr4 24197640 24198838 -178129509 - Tigger3b DNA MER2_type -1 1230 1 1078 207 35 28 chr4 24199045 24199385 -178128962 + L1MCa LINE L1 20 328 -6098 794 320 56 4 chr4 24199385 24199616 -178128731 - MIR SINE MIR -2 260 18 239 211 19 0 chr4 24201964 24202016 -178126331 + MIR SINE MIR 117 169 -93 21 36 0 0 chr4 24202452 24202480 -178125867 + AT_rich Low_complexity Low_complexity 1 28 0 760 124 15 7 chr4 24203438 24203575 -178124772 + L1MA8 LINE L1 6151 6288 -3 1619 173 33 36 chr4 24204027 24204391 -178123956 - MLT1A1 LTR MaLR -2 363 1 715 88 0 0 chr4 24205211 24205313 -178123034 - L1MA2 LINE L1 0 6304 6203 320 169 0 0 chr4 24205385 24205444 -178122903 + L1MA2 LINE L1 6205 6263 -41 * 4264 85 20 11 chr4 24205438 24206087 -178122260 - L1MA2 LINE L1 -103 6201 5547 23 0 0 0 chr4 24206237 24206260 -178122087 + AT_rich Low_complexity Low_complexity 1 23 0 2342 110 0 0 chr4 24206310 24206618 -178121729 + AluSx SINE Alu 1 308 -4 327 25 0 0 chr4 24206618 24206658 -178121689 + (TA)n Simple_repeat Simple_repeat 2 41 0 2112 118 7 10 chr4 24207470 24207767 -178120580 + AluSx SINE Alu 1 296 -16 249 182 0 0 chr4 24207789 24207844 -178120503 + (CA)n Simple_repeat Simple_repeat 2 56 0 800 291 76 10 chr4 24207933 24208222 -178120125 - MER77 LTR ERV1 -4 601 294 2593 89 24 128 chr4 24208223 24208729 -178119618 - MLT2A2 LTR ERVL 0 453 1 385 382 29 32 chr4 24209793 24210133 -178118214 + L1MCa LINE L1 824 1162 -5254 208 279 254 0 chr4 24210194 24210316 -178118031 + MIR SINE MIR 46 198 -64 1779 206 21 29 chr4 24210609 24211027 -178117320 + MLT1C LTR MaLR 53 467 0 321 238 50 0 chr4 24211907 24211987 -178116360 + MIR SINE MIR 108 191 -71 218 273 0 0 chr4 24212403 24212447 -178115900 - L2 LINE L2 -47 3225 3182 651 296 55 43 chr4 24212568 24212821 -178115526 - MIR SINE MIR -5 257 2 2312 103 0 0 chr4 24213107 24213409 -178114938 + AluY SINE Alu 1 302 -9 308 323 93 25 chr4 24213649 24213810 -178114537 - LTR67 LTR ERVL -385 172 1 195 42 0 0 chr4 24214021 24214045 -178114302 + (CAA)n Simple_repeat Simple_repeat 1 24 0 852 315 114 38 chr4 24214050 24214688 -178113659 - L2 LINE L2 -569 2745 2059 245 307 0 15 chr4 24214739 24214829 -178113518 - MIR SINE MIR -101 107 20 650 296 134 41 chr4 24214981 24215479 -178112868 + L2 LINE L2 2770 3313 0 222 242 0 0 chr4 24215509 24215575 -178112772 + GA-rich Low_complexity Low_complexity 2 67 0 2322 109 0 0 chr4 24216237 24216576 -178111771 + AluSx SINE Alu 1 339 0 475 226 0 0 chr4 24216918 24217020 -178111327 + MSTD LTR MaLR 1 102 -294 216 0 0 0 chr4 24217020 24217044 -178111303 + (TC)n Simple_repeat Simple_repeat 1 24 0 660 176 141 0 chr4 24217069 24217211 -178111136 + MSTD LTR MaLR 235 396 0 300 388 78 0 chr4 24217409 24217538 -178110809 + L2 LINE L2 3134 3272 0 431 320 46 102 chr4 24218955 24219146 -178109201 - L2 LINE L2 -1 3271 3102 2300 114 3 0 chr4 24219146 24219452 -178108895 + AluSg SINE Alu 1 307 -3 431 320 46 102 chr4 24219452 24219563 -178108784 - L2 LINE L2 -170 3102 2986 621 139 8 23 chr4 24220232 24220361 -178107986 + GA-rich Low_complexity Low_complexity 5 131 0 379 308 58 26 chr4 24220614 24220716 -178107631 - MIR SINE MIR -82 180 70 2202 129 0 0 chr4 24220716 24221019 -178107328 + AluSg SINE Alu 1 303 -7 379 308 58 26 chr4 24221019 24221072 -178107275 - MIR SINE MIR -192 70 20 407 255 5 132 chr4 24221732 24221936 -178106411 - MIR SINE MIR -11 251 74 25 31 0 0 chr4 24222018 24222050 -178106297 + AT_rich Low_complexity Low_complexity 1 32 0 1369 193 198 29 chr4 24222374 24222819 -178105528 - MLT2B1 LTR ERVL 0 520 1 415 339 189 0 chr4 24222881 24223135 -178105212 - L2 LINE L2 -480 2834 2533 359 286 161 12 chr4 24223324 24223485 -178104862 - MIR SINE MIR -76 186 2 22 0 0 0 chr4 24223493 24223515 -178104832 + AT_rich Low_complexity Low_complexity 1 22 0 556 231 19 69 chr4 24223518 24223678 -178104669 - MIR SINE MIR -4 258 107 846 126 42 0 chr4 24223971 24224114 -178104233 + L1PA16 LINE L1 6018 6166 0 549 297 179 0 chr4 24224459 24224671 -178103676 + MIR SINE MIR 2 251 -11 1172 216 84 59 chr4 24225192 24225548 -178102799 - MLT1A1 LTR MaLR 0 365 1 22 70 0 0 chr4 24225972 24226015 -178102332 + AT_rich Low_complexity Low_complexity 1 43 0 205 133 44 0 chr4 24226714 24226759 -178101588 + (CA)n Simple_repeat Simple_repeat 2 48 0 3195 274 113 17 chr4 24227637 24228992 -178099355 - L2 LINE L2 0 3313 1822 462 319 9 22 chr4 24229485 24229714 -178098633 - ERVL LTR ERVL -1835 3929 3704 197 267 67 0 chr4 24229933 24229978 -178098369 + L2 LINE L2 3148 3195 -77 191 326 101 45 chr4 24230018 24230196 -178098151 + MIR SINE MIR 63 250 -12 7238 200 8 20 chr4 24231466 24233190 -178095157 + L1 LINE L1 3620 5323 -823 2133 120 0 7 chr4 24233190 24233489 -178094858 + AluSg SINE Alu 1 297 -13 7238 200 8 20 chr4 24233489 24233570 -178094777 + L1 LINE L1 5323 5403 -743 2411 132 0 11 chr4 24233575 24233954 -178094393 - THE1C LTR MaLR 0 375 1 4535 140 3 9 chr4 24233954 24234713 -178093634 + L1PA16 LINE L1 5404 6157 -9 490 276 143 22 chr4 24235401 24235716 -178092631 + MLT1K LTR MaLR 194 546 -42 21 95 0 0 chr4 24235789 24235852 -178092495 + AT_rich Low_complexity Low_complexity 1 63 0 183 114 0 0 chr4 24236384 24236419 -178091928 + (A)n Simple_repeat Simple_repeat 1 35 0 223 220 17 34 chr4 24236675 24236734 -178091613 - L2 LINE L2 -10 3303 3246 252 228 123 79 chr4 24237103 24237217 -178091130 - MIR SINE MIR -7 255 137 989 166 66 38 chr4 24237217 24237428 -178090919 - L1MB5 LINE L1 -8 6166 5950 316 286 44 11 chr4 24237428 24237519 -178090828 - MIR SINE MIR -113 149 56 1852 182 31 31 chr4 24237549 24238105 -178090242 - MLT2A2 LTR ERVL 0 554 1 1557 170 37 1 chr4 24238663 24238975 -178089372 - MLT2D LTR ERVL -52 345 6 1423 187 31 98 chr4 24238985 24239116 -178089231 + MLT1B LTR MaLR 1 139 -251 2414 71 17 0 chr4 24239116 24239410 -178088937 + AluY SINE Alu 1 299 -12 1423 187 31 98 chr4 24239410 24239696 -178088651 + MLT1B LTR MaLR 139 390 0 737 291 44 45 chr4 24239696 24240162 -178088185 + L2 LINE L2 2658 3127 -186 665 250 29 35 chr4 24240155 24240327 -178088020 - MIR SINE MIR -79 183 13 * 1463 112 95 16 chr4 24240437 24240741 -178087606 - L1MA8 LINE L1 -3 6288 5961 703 184 26 37 chr4 24242647 24242837 -178085510 + L1PB4 LINE L1 5896 6083 -73 3201 134 129 109 chr4 24242844 24244270 -178084077 + pTR5 LTR ERV1 31 2231 -23 1914 143 4 4 chr4 24244473 24244799 -178083548 - AluSx SINE Alu 0 331 6 1004 141 68 16 chr4 24244812 24245004 -178083343 - L1PA16 LINE L1 -2 6164 5963 2887 69 23 0 chr4 24245005 24245396 -178082951 + MLT2A1 LTR ERVL 1 400 -44 27 49 0 0 chr4 24245423 24245464 -178082883 + AT_rich Low_complexity Low_complexity 1 41 0 3769 21 0 0 chr4 24245475 24245911 -178082436 - L1PA3 LINE L1 -2 6153 5718 339 65 0 0 chr4 24245926 24245972 -178082375 + MLT2A1 LTR ERVL 399 444 0 370 108 0 84 chr4 24245977 24246060 -178082287 - L1PA16 LINE L1 -204 5961 5886 706 281 248 17 chr4 24246143 24246563 -178081784 - L2 LINE L2 -410 2904 2388 2071 132 0 13 chr4 24246645 24246948 -178081399 + AluSc SINE Alu 1 299 -10 456 358 58 9 chr4 24247010 24247236 -178081111 - MIR SINE MIR -21 241 5 317 272 25 0 chr4 24247343 24247424 -178080923 + MIR3 SINE MIR 120 202 -6 24 0 0 0 chr4 24248415 24248439 -178079908 + AT_rich Low_complexity Low_complexity 1 24 0 2665 102 0 19 chr4 24248774 24249145 -178079202 + THE1B LTR MaLR 1 364 0 5198 130 12 22 chr4 24249246 24250203 -178078144 + L1PB3 LINE L1 5197 6146 -8 180 0 0 103 chr4 24250208 24250247 -178078100 + (TAAAAA)n Simple_repeat Simple_repeat 1 35 0 2111 133 67 14 chr4 24250727 24251073 -178077274 - THE1B LTR MaLR 0 364 1 394 308 41 29 chr4 24251226 24251398 -178076949 + L1MEd LINE L1 944 1117 -5002 329 221 55 24 chr4 24251566 24251693 -178076654 + HAL1b LINE L1 331 461 -887 212 244 0 0 chr4 24251823 24251864 -178076483 + polypurine Low_complexity Low_complexity 2 42 0 702 251 11 38 chr4 24252178 24252361 -178075986 + MER5B DNA MER1_type 1 178 0 5516 62 4 23 chr4 24252363 24253108 -178075239 + L1PA8 LINE L1 5432 6162 -10 758 341 10 10 chr4 24254570 24254863 -178073484 - L3 LINE CR1 -56 1521 1229 402 349 48 0 chr4 24255784 24255930 -178072417 + MER91B DNA MER1_type 38 190 0 467 275 17 16 chr4 24255978 24256203 -178072144 + L1ME3A LINE L1 5688 5875 -295 571 122 11 0 chr4 24257044 24257134 -178071213 - Tigger7 DNA MER2_type 0 2487 2397 2856 171 8 6 chr4 24257136 24257655 -178070692 - Tigger7 DNA MER2_type -1967 520 1 1367 95 15 5 chr4 24257922 24258122 -178070225 - L1PA14 LINE L1 -2 6159 5958 1867 149 0 59 chr4 24258145 24258468 -178069879 - AluSx SINE Alu -8 304 1 207 309 49 25 chr4 24260425 24260506 -178067841 - MIR SINE MIR -160 102 20 1685 171 12 12 chr4 24260508 24260829 -178067518 + L1PB4 LINE L1 5823 6143 -13 180 0 0 0 chr4 24260834 24260854 -178067493 + (CAAT)n Simple_repeat Simple_repeat 4 23 0 302 283 19 28 chr4 24262736 24262842 -178065505 - MIR3 SINE MIR -6 202 98 22 80 0 0 chr4 24264222 24264272 -178064075 + AT_rich Low_complexity Low_complexity 1 50 0 2519 73 0 19 chr4 24264453 24264770 -178063577 + AluY SINE Alu 1 311 0 263 254 0 0 chr4 24265226 24265285 -178063062 + (TATG)n Simple_repeat Simple_repeat 4 62 0 199 327 84 9 chr4 24265403 24265510 -178062837 - MIR3 SINE MIR -5 203 89 378 235 30 76 chr4 24265580 24265747 -178062600 - MIR SINE MIR -44 218 64 942 88 7 0 chr4 24266025 24266162 -178062185 + L1M2 LINE L1 5644 5781 -510 911 165 6 6 chr4 24266162 24266338 -178062009 + L1MA8 LINE L1 4602 4777 -1369 * 1784 148 47 97 chr4 24266337 24266851 -178061496 + L1MA8 LINE L1 5800 6287 -4 339 311 28 0 chr4 24267838 24267944 -178060403 - L2 LINE L2 -8 3305 3197 319 354 22 31 chr4 24267967 24268193 -178060154 - MIR SINE MIR -5 257 34 486 289 37 50 chr4 24268948 24269166 -178059181 - MIR SINE MIR 0 262 48 180 0 0 0 chr4 24269932 24269952 -178058395 + (TAA)n Simple_repeat Simple_repeat 1 20 0 354 314 74 0 chr4 24269980 24270101 -178058246 + MIR SINE MIR 68 197 -65 2003 117 0 17 chr4 24270650 24270948 -178057399 + AluSg SINE Alu 5 297 -13 460 92 11 11 chr4 24270948 24271035 -178057312 + L1PA16 LINE L1 5322 5408 -758 2331 133 0 18 chr4 24271035 24271417 -178056930 - THE1C LTR MaLR 0 375 1 4438 145 3 9 chr4 24271417 24272176 -178056171 + L1PA16 LINE L1 5404 6157 -9 490 276 143 22 chr4 24272864 24273179 -178055168 + MLT1K LTR MaLR 194 546 -42 21 95 0 0 chr4 24273252 24273315 -178055032 + AT_rich Low_complexity Low_complexity 1 63 0 183 114 0 0 chr4 24273848 24273883 -178054464 + (A)n Simple_repeat Simple_repeat 1 35 0 223 220 17 34 chr4 24274139 24274198 -178054149 - L2 LINE L2 -10 3303 3246 285 272 70 26 chr4 24274567 24274681 -178053666 - MIR SINE MIR -7 255 137 662 232 66 38 chr4 24274681 24274892 -178053455 - L1MB5 LINE L1 -8 6166 5950 264 308 44 11 chr4 24274892 24274983 -178053364 - MIR SINE MIR -113 149 56 1786 183 27 38 chr4 24275016 24275573 -178052774 - MLT2A2 LTR ERVL -7 547 1 1557 170 37 1 chr4 24276132 24276444 -178051903 - MLT2D LTR ERVL -52 345 6 403 264 80 8 chr4 24276454 24276579 -178051768 + MLT1B LTR MaLR 1 134 -256 1997 129 0 16 chr4 24276585 24276888 -178051459 + AluSq SINE Alu 1 298 -15 222 301 55 0 chr4 24278621 24278694 -178049653 - MIR SINE MIR -99 163 87 836 281 32 24 chr4 24279145 24279394 -178048953 - MIR SINE MIR -10 252 2 186 43 0 0 chr4 24279441 24279464 -178048883 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 334 347 148 0 chr4 24279475 24279671 -178048676 - MIR SINE MIR -8 254 30 512 284 37 50 chr4 24280611 24280829 -178047518 - MIR SINE MIR 0 262 48 180 0 0 0 chr4 24281590 24281610 -178046737 + (TAA)n Simple_repeat Simple_repeat 1 20 0 354 314 74 0 chr4 24281638 24281759 -178046588 + MIR SINE MIR 68 197 -65 2218 68 47 0 chr4 24282307 24282585 -178045762 + AluYa5 SINE Alu 5 295 -16 2253 92 3 0 chr4 24283684 24283977 -178044370 + AluY SINE Alu 1 294 -17 213 39 0 0 chr4 24285465 24285491 -178042856 + (TA)n Simple_repeat Simple_repeat 2 27 0 479 258 60 26 chr4 24286665 24286816 -178041531 + L2 LINE L2 3158 3313 0 227 322 40 141 chr4 24287512 24287703 -178040644 - L2 LINE L2 -52 3220 3070 643 262 35 31 chr4 24287703 24287959 -178040388 + MIR SINE MIR 2 258 -4 227 322 40 141 chr4 24287959 24288071 -178040276 - L2 LINE L2 -202 3070 2948 1675 193 45 30 chr4 24288096 24288544 -178039803 - MER89 LTR ERV1 -3 556 3 1948 222 59 59 chr4 24288802 24289082 -178039265 + MLT1E2 LTR MaLR 18 297 -329 2176 119 3 0 chr4 24289082 24289385 -178038962 + AluSg SINE Alu 1 304 -6 1948 222 59 59 chr4 24289385 24289713 -178038634 + MLT1E2 LTR MaLR 296 626 0 267 294 206 0 chr4 24289965 24290101 -178038246 - MIR SINE MIR -89 173 10 2507 76 0 0 chr4 24290454 24290758 -178037589 - AluY SINE Alu -7 304 1 438 228 50 0 chr4 24290809 24290910 -178037437 + MIR SINE MIR 87 192 -70 1801 103 36 0 chr4 24292003 24292256 -178036091 - AluSg SINE Alu 0 310 49 2110 236 18 18 chr4 24292301 24292806 -178035541 - MLT1D LTR MaLR 0 505 1 343 258 161 0 chr4 24293678 24293802 -178034545 - MER46C DNA MER2_type 0 338 195 241 328 0 0 chr4 24294078 24294145 -178034202 - MIR SINE MIR -117 145 79 185 356 33 22 chr4 24294273 24294363 -178033984 + MIR SINE MIR 158 248 -14 218 279 33 16 chr4 24294549 24294610 -178033737 + L2 LINE L2 3210 3271 -1 209 360 13 47 chr4 24294757 24294907 -178033440 - L2 LINE L2 -234 3038 2894 2154 98 7 0 chr4 24295101 24295410 -178032937 - AluSp SINE Alu 0 317 7 278 120 40 0 chr4 24296228 24296278 -178032069 - MER96 DNA MER1_type? -119 56 5 1195 219 5 0 chr4 24296355 24296574 -178031773 - MER58A DNA MER1_type 0 224 5 180 309 118 0 chr4 24296593 24296661 -178031686 + MIR SINE MIR 37 112 -150 681 281 64 36 chr4 24296788 24297037 -178031310 - MIR SINE MIR 0 262 7 209 341 0 12 chr4 24298192 24298274 -178030073 - L2 LINE L2 0 3272 3192 379 119 0 0 chr4 24298390 24298457 -178029890 + L1MC2 LINE L1 6277 6343 -1 25 0 0 0 chr4 24298479 24298504 -178029843 + AT_rich Low_complexity Low_complexity 1 25 0 840 216 45 9 chr4 24299252 24299472 -178028875 + MER63C DNA MER1_type 1 228 -702 1734 118 55 118 chr4 24299472 24299872 -178028475 - THE1C LTR MaLR 0 375 1 1473 232 50 9 chr4 24299872 24300519 -178027828 + MER63C DNA MER1_type 221 930 0 221 328 0 0 chr4 24300522 24300580 -178027767 - MIR SINE MIR -157 105 48 297 354 100 35 chr4 24301070 24301531 -178026816 + L1ME3A LINE L1 3 493 -5626 * 517 268 134 0 chr4 24301506 24301685 -178026662 + HAL1 LINE L1 1555 1757 -733 2121 134 97 0 chr4 24301718 24302060 -178026287 - THE1C LTR MaLR 0 375 1 825 174 56 51 chr4 24302062 24302258 -178026089 + MLT1B LTR MaLR 4 200 -190 433 287 44 7 chr4 24302294 24302430 -178025917 + HAL1 LINE L1 1786 1926 -564 1996 192 174 0 chr4 24302430 24302873 -178025474 - MLT2B1 LTR ERVL 0 520 1 23 0 0 0 chr4 24302877 24302900 -178025447 + AT_rich Low_complexity Low_complexity 1 23 0 3662 201 28 14 chr4 24303067 24303848 -178024499 - L1MB3 LINE L1 0 6183 5392 582 290 44 58 chr4 24303880 24304245 -178024102 + HAL1 LINE L1 1912 2271 -219 23 0 0 53 chr4 24304465 24304487 -178023860 + AT_rich Low_complexity Low_complexity 1 22 -14 1574 90 4 26 chr4 24304487 24304720 -178023627 - L1PA8A LINE L1 -3 6128 5901 23 0 0 53 chr4 24304720 24304735 -178023612 + AT_rich Low_complexity Low_complexity 22 36 0 374 303 115 31 chr4 24304876 24305578 -178022769 + L1ME3A LINE L1 2396 3156 -2973 216 86 0 0 chr4 24307224 24307259 -178021088 + (A)n Simple_repeat Simple_repeat 1 35 0 1211 280 97 28 chr4 24307437 24308152 -178020195 + L1ME3A LINE L1 3339 4102 -2027 198 0 0 0 chr4 24308221 24308243 -178020104 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2857 87 2 12 chr4 24308319 24308752 -178019595 + L1PA10 LINE L1 5750 6178 0 853 299 84 28 chr4 24308953 24309730 -178018617 + L1ME3A LINE L1 4467 5286 -843 1532 271 45 7 chr4 24309737 24310202 -178018145 + L1MEc LINE L1 40 522 -5874 399 196 108 0 chr4 24310212 24310314 -178018033 + L1MEc LINE L1 2504 2616 -3599 589 293 99 54 chr4 24310340 24310947 -178017400 + L1ME3A LINE L1 5301 5934 -219 293 337 29 17 chr4 24311192 24311367 -178016980 - MIR SINE MIR -12 250 74 375 242 278 41 chr4 24311944 24312138 -178016209 + MIR SINE MIR 20 259 -3 2339 96 0 0 chr4 24312617 24312918 -178015429 - AluSg SINE Alu -9 301 1 730 267 65 28 chr4 24313451 24313911 -178014436 + HAL1 LINE L1 1877 2353 -154 4132 16 0 14 chr4 24314415 24314903 -178013444 + L1PA3 LINE L1 5675 6155 0 219 88 0 0 chr4 24314912 24314946 -178013401 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr4 24315103 24315126 -178013221 + AT_rich Low_complexity Low_complexity 1 23 0 231 125 0 0 chr4 24315385 24315425 -178012922 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 251 266 0 25 chr4 24315519 24315598 -178012749 + (TA)n Simple_repeat Simple_repeat 2 78 0 198 150 0 0 chr4 24315675 24315715 -178012632 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 328 258 10 31 chr4 24315844 24315941 -178012406 + GA-rich Low_complexity Low_complexity 5 99 0 426 20 0 0 chr4 24316694 24316745 -178011602 + (CA)n Simple_repeat Simple_repeat 2 52 0 23 0 0 0 chr4 24316817 24316840 -178011507 + AT_rich Low_complexity Low_complexity 1 23 0 390 159 0 0 chr4 24316906 24316975 -178011372 + CT-rich Low_complexity Low_complexity 1 69 0 1921 181 16 18 chr4 24317405 24317786 -178010561 + MLT1B LTR MaLR 11 390 0 1205 273 47 43 chr4 24318096 24318540 -178009807 - MLT1C LTR MaLR 0 467 22 1666 267 80 10 chr4 24318972 24319459 -178008888 - LTR33 LTR ERVL 0 521 1 423 306 145 16 chr4 24320302 24320531 -178007816 - MIR SINE MIR 0 262 1 508 208 0 0 chr4 24320553 24320649 -178007698 + MIR SINE MIR 65 160 -102 361 295 150 12 chr4 24322019 24322192 -178006155 + MIR SINE MIR 66 262 0 25 51 0 0 chr4 24323126 24323165 -178005182 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr4 24323885 24323909 -178004438 + AT_rich Low_complexity Low_complexity 1 24 0 1213 263 80 25 chr4 24324044 24324444 -178003903 + LTR16B LTR ERVL 41 462 -2 345 207 0 0 chr4 24324462 24324549 -178003798 + (ATG)n Simple_repeat Simple_repeat 1 87 0 558 248 20 21 chr4 24324963 24325129 -178003218 - L1PB4 LINE L1 -6 6160 5996 404 362 102 24 chr4 24326037 24326614 -178001733 + L2 LINE L2 2111 2732 -582 327 343 36 7 chr4 24326789 24326926 -178001421 + MER5A DNA MER1_type 43 183 -6 1647 156 47 25 chr4 24327127 24327441 -178000906 - AluSg SINE Alu 0 320 1 21 36 0 0 chr4 24327662 24327690 -178000657 + AT_rich Low_complexity Low_complexity 1 28 0 281 388 20 6 chr4 24329901 24330132 -177998215 - L2 LINE L2 -310 2962 2731 * 776 329 34 0 chr4 24330128 24330362 -177997985 - MIR SINE MIR 0 262 21 2260 104 3 22 chr4 24331321 24331639 -177996708 + AluSx SINE Alu 1 312 0 384 169 0 0 chr4 24331975 24332040 -177996307 - MLT1A1 LTR MaLR -2 363 299 2963 57 0 0 chr4 24332041 24332410 -177995937 - L1PA8 LINE L1 -233 5939 5571 1384 73 23 41 chr4 24332410 24332628 -177995719 + L1PA8 LINE L1 5958 6172 0 1339 156 68 37 chr4 24332633 24332821 -177995526 - MLT1A1 LTR MaLR -61 304 102 2064 139 44 33 chr4 24332821 24333181 -177995166 - THE1B LTR MaLR 0 364 1 1339 156 68 37 chr4 24333181 24333287 -177995060 - MLT1A1 LTR MaLR -263 102 1 235 279 51 51 chr4 24333494 24333573 -177994774 + HAL1 LINE L1 2 80 -2427 2989 171 24 25 chr4 24334278 24334952 -177993395 - L1MA7 LINE L1 0 6291 5619 345 326 51 78 chr4 24334967 24335261 -177993086 + HAL1 LINE L1 968 1253 -1254 255 61 0 0 chr4 24336184 24336217 -177992130 + (CA)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr4 24336858 24336881 -177991466 + AT_rich Low_complexity Low_complexity 1 23 0 482 312 64 10 chr4 24337759 24337961 -177990386 - MIR SINE MIR -2 260 48 656 310 84 4 chr4 24338421 24338647 -177989700 - MIR SINE MIR -17 245 2 227 356 91 9 chr4 24339079 24339298 -177989049 + L2 LINE L2 2941 3177 -136 1109 192 76 108 chr4 24339305 24339686 -177988661 - MLT1C LTR MaLR 0 467 99 507 223 0 0 chr4 24339699 24339793 -177988554 + MLT1C LTR MaLR 374 467 0 319 240 160 48 chr4 24339940 24340065 -177988282 - MIR SINE MIR -116 146 8 888 275 172 14 chr4 24340955 24341576 -177986771 - HAL1 LINE L1 -11 2496 1778 1089 256 63 24 chr4 24341577 24341960 -177986387 - HAL1 LINE L1 -766 1741 1344 451 161 36 18 chr4 24341983 24342095 -177986252 + L1MD2 LINE L1 6246 6359 0 2125 89 0 0 chr4 24342107 24342376 -177985971 + AluSx SINE Alu 39 307 -5 1820 175 72 56 chr4 24342976 24343474 -177984873 - Charlie1b DNA MER1_type -6 517 12 1752 143 164 29 chr4 24344174 24344377 -177983970 - MSTA LTR MaLR 0 428 254 2192 100 0 0 chr4 24344377 24344656 -177983691 - AluSg SINE Alu -16 294 16 1752 143 164 29 chr4 24344656 24344829 -177983518 - MSTA LTR MaLR -174 254 1 1123 287 35 50 chr4 24345059 24345481 -177982866 + MLT1J2 LTR MaLR 1 416 -34 236 265 0 0 chr4 24346539 24346607 -177981740 + MLT1K LTR MaLR 504 571 -17 249 196 0 0 chr4 24346739 24346790 -177981557 + (TATG)n Simple_repeat Simple_repeat 1 51 0 287 284 0 0 chr4 24347506 24347573 -177980774 + MER96 DNA MER1_type? 3 69 -106 299 319 76 91 chr4 24348444 24348720 -177979627 + L2 LINE L2 2910 3181 -91 319 336 44 0 chr4 24348771 24348884 -177979463 - L2 LINE L2 -4 3268 3151 329 324 12 35 chr4 24349834 24350004 -177978343 + L1ME LINE L1 1 166 -5904 397 368 13 39 chr4 24350080 24350314 -177978033 + MIR SINE MIR 7 234 -28 246 261 57 109 chr4 24350468 24350698 -177977649 - MER39 LTR ERV1 -234 473 256 1579 222 90 42 chr4 24350850 24351358 -177976989 + MER34 LTR ERV1 11 537 -5 2376 97 3 0 chr4 24351621 24351930 -177976417 - AluSg SINE Alu 0 310 1 1287 141 0 0 chr4 24352149 24352334 -177976013 + AluSx SINE Alu 13 197 -115 191 36 36 0 chr4 24352339 24352367 -177975980 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 670 121 26 43 chr4 24352386 24352502 -177975845 + AluSx SINE Alu 181 294 -15 26 0 0 0 chr4 24352502 24352528 -177975819 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr4 24353991 24354014 -177974333 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 256 343 103 11 chr4 24354205 24354380 -177973967 - MIR3 SINE MIR -6 202 12 1960 127 23 7 chr4 24354729 24355029 -177973318 - AluSg SINE Alu 0 310 6 431 127 38 0 chr4 24355045 24355124 -177973223 + GA-rich Low_complexity Low_complexity 3 84 0 2717 166 147 45 chr4 24355588 24355666 -177972681 - MER39 LTR ERV1 -3 704 635 2615 89 41 36 chr4 24355666 24355869 -177972478 + L1MA5A LINE L1 5847 6048 -249 2191 113 0 10 chr4 24355869 24356178 -177972169 + AluSg SINE Alu 1 306 -4 2615 89 41 36 chr4 24356178 24356413 -177971934 + L1MA5A LINE L1 6048 6287 -10 2717 166 147 45 chr4 24356413 24356973 -177971374 - MER39 LTR ERV1 -72 635 1 314 340 56 6 chr4 24357414 24357576 -177970771 - MIR SINE MIR -36 226 57 1007 103 5 32 chr4 24358249 24358434 -177969913 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 597 151 8 16 chr4 24358434 24358560 -177969787 + GA-rich Low_complexity Low_complexity 4 128 0 477 185 12 0 chr4 24359310 24359391 -177968956 + MER93b LTR ERV1 1 82 -291 190 337 12 23 chr4 24359882 24359968 -177968379 + L2 LINE L2 2933 3017 -255 194 290 51 80 chr4 24360130 24360268 -177968079 + L2 LINE L2 2913 3046 -226 859 194 12 6 chr4 24360381 24360541 -177967806 - FAM SINE Alu -17 168 8 447 298 58 35 chr4 24360875 24361046 -177967301 + MIR SINE MIR 19 193 -69 21 0 0 0 chr4 24361091 24361112 -177967235 + AT_rich Low_complexity Low_complexity 1 21 0 464 222 20 18 chr4 24361279 24361440 -177966907 + MER57A LTR ERV1 215 403 0 370 345 141 10 chr4 24361489 24361695 -177966652 + MIR SINE MIR 2 234 -28 21 0 0 0 chr4 24362194 24362215 -177966132 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr4 24362756 24362799 -177965548 + AT_rich Low_complexity Low_complexity 1 43 0 578 306 97 9 chr4 24362829 24363045 -177965302 - MIR SINE MIR 0 262 28 539 167 29 0 chr4 24363221 24363359 -177964988 + GA-rich Low_complexity Low_complexity 2 143 0 1733 33 0 0 chr4 24364141 24364351 -177963996 + L1PA5 LINE L1 5945 6154 0 261 0 0 0 chr4 24364358 24364387 -177963960 + (TA)n Simple_repeat Simple_repeat 2 30 0 331 244 63 8 chr4 24365777 24365904 -177962443 + HAL1 LINE L1 113 246 -2261 637 240 80 7 chr4 24366064 24366214 -177962133 + MER63A DNA MER1_type 49 209 -1 468 289 180 12 chr4 24366265 24366604 -177961743 + HAL1 LINE L1 438 833 -1674 1347 200 142 42 chr4 24366608 24367125 -177961222 + MER39 LTR ERV1 1 562 -3 1561 175 7 51 chr4 24367164 24367456 -177960891 - AluJb SINE Alu -28 284 6 2221 227 54 36 chr4 24367599 24368898 -177959449 + L1ME1 LINE L1 4832 6333 -1 1307 203 92 0 chr4 24369272 24369578 -177958769 + MER45B DNA AcHobo 703 1036 -4 956 269 25 65 chr4 24369704 24370057 -177958290 - MER115 DNA AcHobo 0 693 355 * 1170 126 10 35 chr4 24370051 24370250 -177958097 - MSTA LTR MaLR -232 196 3 342 0 0 0 chr4 24370333 24370371 -177957976 + (CA)n Simple_repeat Simple_repeat 2 39 0 3332 143 24 2 chr4 24372590 24373088 -177955259 - MER1A DNA MER1_type 0 529 21 360 0 0 0 chr4 24373300 24373340 -177955007 + (TAA)n Simple_repeat Simple_repeat 2 41 0 268 311 48 19 chr4 24373341 24373444 -177954903 - MIR SINE MIR -8 254 149 1890 184 14 11 chr4 24373444 24373802 -177954545 + MLT1A1 LTR MaLR 1 359 -6 473 283 20 46 chr4 24373808 24373960 -177954387 - MIR SINE MIR -109 153 6 2343 88 0 3 chr4 24375103 24375398 -177952949 + AluSg SINE Alu 3 296 -14 2369 150 28 28 chr4 24375522 24375955 -177952392 - Tigger2a DNA MER2_type -1 433 1 261 324 0 29 chr4 24376074 24376179 -177952168 + Zaphod DNA AcHobo 11 112 -3919 220 170 43 0 chr4 24376254 24376301 -177952046 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 324 255 0 78 chr4 24376301 24376403 -177951944 - L1MC4 LINE L1 -1335 6707 6614 2798 198 74 74 chr4 24376412 24377162 -177951185 + L1ME2 LINE L1 5261 6013 -151 1805 168 0 10 chr4 24377162 24377459 -177950888 + AluJb SINE Alu 1 294 -18 2798 198 74 74 chr4 24377459 24377612 -177950735 + L1ME2 LINE L1 6012 6164 0 1996 255 47 51 chr4 24377694 24378589 -177949758 + Zaphod DNA AcHobo 100 990 -3041 685 271 24 0 chr4 24378610 24378776 -177949571 + MER58B DNA MER1_type 171 340 -1 1327 226 74 13 chr4 24378786 24379179 -177949168 + Zaphod DNA AcHobo 3596 4012 -19 917 120 12 18 chr4 24379613 24379780 -177948567 + L1MA5A LINE L1 6132 6297 0 378 242 11 0 chr4 24380457 24380552 -177947795 + MER69 DNA AcHobo 2429 2524 -2 575 155 10 58 chr4 24380559 24380634 -177947713 - LOR1b LTR ERV1 0 461 391 2455 85 51 20 chr4 24380634 24380987 -177947360 + THE1B LTR MaLR 1 364 0 575 155 10 58 chr4 24380987 24381014 -177947333 - LOR1b LTR ERV1 -70 391 364 405 326 80 17 chr4 24381296 24381471 -177946876 + MIR SINE MIR 19 204 -58 823 314 16 4 chr4 24381523 24381768 -177946579 + MIR SINE MIR 4 251 -11 21 0 0 0 chr4 24382082 24382103 -177946244 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 24383557 24383585 -177944762 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 24384017 24384038 -177944309 + AT_rich Low_complexity Low_complexity 1 21 0 4975 152 29 77 chr4 24384083 24384235 -177944112 + L1MA7 LINE L1 5181 5339 -952 1642 155 0 75 chr4 24384235 24384557 -177943790 + AluJb SINE Alu 1 298 -14 4975 152 29 77 chr4 24384557 24385413 -177942934 + L1MA7 LINE L1 5339 6164 -127 2084 104 0 11 chr4 24385413 24385727 -177942620 + AluSq SINE Alu 1 311 0 4975 152 29 77 chr4 24385727 24385847 -177942500 + L1MA7 LINE L1 6164 6288 -3 27 0 0 0 chr4 24386629 24386656 -177941691 + AT_rich Low_complexity Low_complexity 1 27 0 357 171 132 47 chr4 24386911 24387040 -177941307 - MER103 DNA DNA -16 150 11 309 250 45 11 chr4 24387411 24387499 -177940848 + MER103 DNA DNA 68 158 -8 188 119 0 24 chr4 24387737 24387779 -177940568 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 266 353 33 87 chr4 24387874 24388149 -177940198 - L2 LINE L2 -3 3269 3010 2244 173 12 2 chr4 24389243 24389642 -177938705 + MER57A LTR ERV1 1 403 0 2680 121 19 17 chr4 24389714 24390136 -177938211 + MSTA LTR MaLR 1 423 -5 384 299 29 4 chr4 24390205 24390395 -177937952 - MIR SINE MIR -2 260 3 199 244 39 13 chr4 24390403 24390481 -177937866 - MIR SINE MIR -36 226 147 5104 100 31 8 chr4 24392272 24393043 -177935304 + L1PA13 LINE L1 5371 6159 -4 1551 213 60 23 chr4 24393176 24393368 -177934979 - MLT1A1 LTR MaLR -5 360 148 2261 123 0 7 chr4 24393368 24393677 -177934670 - AluSg SINE Alu -3 307 1 1551 213 60 23 chr4 24393677 24393831 -177934516 - MLT1A1 LTR MaLR -217 148 1 476 221 0 49 chr4 24393862 24393990 -177934357 + L1MB3 LINE L1 5665 5779 -392 249 176 14 54 chr4 24394001 24394075 -177934272 - L1M3 LINE L1 -350 5833 5763 1338 128 8 51 chr4 24394129 24394386 -177933961 + L1MB3 LINE L1 5787 6032 -151 390 214 18 89 chr4 24394380 24394548 -177933799 + L1MB3 LINE L1 5998 6153 -30 * 191 114 29 0 chr4 24394820 24394855 -177933492 + (TA)n Simple_repeat Simple_repeat 1 36 0 24 53 0 0 chr4 24395244 24395282 -177933065 + AT_rich Low_complexity Low_complexity 1 38 0 295 387 17 0 chr4 24395539 24395658 -177932689 + MIR3 SINE MIR 81 201 -7 193 350 0 0 chr4 24395816 24395876 -177932471 - MIR SINE MIR -1 261 202 1225 238 141 17 chr4 24395959 24396370 -177931977 + MLT1H LTR MaLR 72 533 -16 537 252 50 7 chr4 24396397 24396536 -177931811 - MIR SINE MIR -43 219 75 195 350 68 49 chr4 24396980 24397143 -177931204 - L3 LINE CR1 -410 1167 1002 358 314 7 50 chr4 24397198 24397338 -177931009 + MIR SINE MIR 16 149 -113 592 290 86 75 chr4 24397417 24397845 -177930502 - MLT2F LTR ERVL -52 611 179 2830 168 86 90 chr4 24397891 24399090 -177929257 - LTR12 LTR ERV1 -124 1523 10 303 167 0 56 chr4 24399090 24399162 -177929185 + MER53 DNA DNA 38 105 -84 489 164 41 16 chr4 24399162 24399284 -177929063 + MER53 DNA DNA 65 189 0 1190 163 46 15 chr4 24399361 24399605 -177928742 + L1M3 LINE L1 5423 5647 -524 221 57 29 0 chr4 24400402 24400437 -177927910 + (CA)n Simple_repeat Simple_repeat 2 37 0 362 353 77 31 chr4 24400655 24400916 -177927431 + L1M4 LINE L1 2530 2802 -3344 390 300 79 7 chr4 24400940 24401080 -177927267 + L1M4 LINE L1 2877 3026 -3120 1268 142 4 18 chr4 24401081 24401306 -177927041 - MER46A DNA MER2_type 0 236 15 417 308 105 22 chr4 24401339 24402007 -177926340 + L1M4 LINE L1 3047 3769 -2377 1978 134 42 0 chr4 24402178 24402462 -177925885 + AluSx SINE Alu 3 298 -14 467 309 73 64 chr4 24402740 24403083 -177925264 - L2 LINE L2 -493 2821 2476 234 273 54 132 chr4 24404549 24404754 -177923593 - L2 LINE L2 -54 3218 3030 296 319 84 0 chr4 24405083 24405202 -177923145 - L2 LINE L2 -8 3264 3136 312 250 146 14 chr4 24405403 24405615 -177922732 + L1ME4a LINE L1 5881 6120 -1 368 293 27 48 chr4 24406025 24406172 -177922175 - MIR SINE MIR -71 191 48 279 79 0 0 chr4 24407336 24407374 -177920973 + (T)n Simple_repeat Simple_repeat 1 38 0 328 266 49 49 chr4 24408301 24408444 -177919903 + MIR3 SINE MIR 3 145 -63 277 263 44 44 chr4 24408863 24408977 -177919370 + LTR16A1 LTR ERVL 180 293 -164 285 95 0 0 chr4 24408977 24409019 -177919328 + L1PB4 LINE L1 5716 5757 -399 225 169 0 0 chr4 24409024 24409083 -177919264 - LTR66 LTR ERVL -158 452 394 220 219 0 0 chr4 24409083 24409124 -177919223 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 1728 195 3 19 chr4 24409124 24409503 -177918844 + L1PB4 LINE L1 5782 6154 -2 227 283 10 0 chr4 24409524 24409623 -177918724 + LTR16A1 LTR ERVL 328 427 -30 261 272 16 99 chr4 24409693 24409807 -177918540 + MIR SINE MIR 40 134 -128 2230 115 6 10 chr4 24409807 24410120 -177918227 + AluSx SINE Alu 1 312 0 261 272 16 99 chr4 24410120 24410209 -177918138 + MIR SINE MIR 134 229 -33 1334 134 49 22 chr4 24411082 24411305 -177917042 + MER30 DNA MER1_type 2 230 0 661 308 148 39 chr4 24411421 24411859 -177916488 - L2 LINE L2 0 3313 2828 734 252 108 61 chr4 24411997 24412390 -177915957 + L2 LINE L2 2573 3028 -285 2123 114 0 0 chr4 24412390 24412687 -177915660 - AluSx SINE Alu -15 297 1 734 252 108 61 chr4 24412687 24412900 -177915447 + L2 LINE L2 3028 3229 -84 848 268 27 46 chr4 24412923 24413296 -177915051 + MLT1I LTR MaLR 38 403 -6 259 345 0 0 chr4 24413297 24413384 -177914963 + L2 LINE L2 3182 3268 -4 682 246 18 101 chr4 24413881 24414010 -177914337 + MIR SINE MIR 35 138 -124 1991 140 3 0 chr4 24414010 24414296 -177914051 + AluJb SINE Alu 1 287 -25 682 246 18 101 chr4 24414296 24414394 -177913953 + MIR SINE MIR 138 243 -19 385 367 122 14 chr4 24414499 24414867 -177913480 - L2 LINE L2 -563 2751 2344 781 229 64 54 chr4 24414927 24415224 -177913123 + L2 LINE L2 3009 3308 -5 2344 66 3 13 chr4 24415416 24415719 -177912628 + AluY SINE Alu 1 300 -11 311 219 44 34 chr4 24416340 24416490 -177911857 + L1MC4 LINE L1 5463 5614 -507 2470 78 7 182 chr4 24416490 24417039 -177911308 - MLT2A2 LTR ERVL 0 453 1 364 269 102 43 chr4 24417039 24417363 -177910984 + L1MC4 LINE L1 5607 5949 -1859 201 154 0 0 chr4 24417786 24417825 -177910522 + T-rich Low_complexity Low_complexity 1 39 0 523 328 39 15 chr4 24419033 24419237 -177909110 - MIR SINE MIR -31 231 23 481 324 19 23 chr4 24420770 24421032 -177907315 - MIR SINE MIR 0 262 2 225 0 0 0 chr4 24421099 24421124 -177907223 + (T)n Simple_repeat Simple_repeat 1 25 0 320 209 209 0 chr4 24421548 24421639 -177906708 + L2 LINE L2 3202 3311 -2 2079 123 0 7 chr4 24422113 24422415 -177905932 + AluY SINE Alu 2 301 -10 2282 61 0 0 chr4 24422425 24422702 -177905645 + AluY SINE Alu 29 305 -6 532 308 101 45 chr4 24422708 24423251 -177905096 + L2 LINE L2 2722 3310 -3 229 288 87 2 chr4 24426192 24426279 -177902068 + MIR SINE MIR 48 147 -61 1390 248 54 40 chr4 24426292 24426788 -177901559 + MLT1H1 LTR MaLR 51 553 -2 820 287 100 36 chr4 24426824 24427273 -177901074 + L1MEd LINE L1 7 484 -5635 281 216 0 34 chr4 24427273 24427361 -177900986 + L1MA8 LINE L1 6205 6289 -2 357 331 62 22 chr4 24427388 24427566 -177900781 + L1MEd LINE L1 489 673 -5446 441 233 34 125 chr4 24427569 24427745 -177900602 - MER63A DNA MER1_type -2 208 49 2043 130 10 10 chr4 24427921 24428213 -177900134 + AluSx SINE Alu 1 292 -20 305 267 11 22 chr4 24428213 24428303 -177900044 + L1MC4 LINE L1 6615 6703 -1339 198 103 0 0 chr4 24428305 24428334 -177900013 + (CATA)n Simple_repeat Simple_repeat 4 32 0 12066 209 31 9 chr4 24428493 24431062 -177897285 + L1 LINE L1 127 2753 -4096 4165 176 32 25 chr4 24431124 24431309 -177897038 + L1 LINE L1 4892 5074 -1774 2248 118 0 3 chr4 24431309 24431614 -177896733 + AluSq SINE Alu 1 304 -9 4165 176 32 25 chr4 24431614 24432412 -177895935 + L1 LINE L1 5074 5882 -966 479 47 0 47 chr4 24432411 24432497 -177895850 + L1M LINE L1 5959 6040 -965 * 731 119 25 0 chr4 24432497 24432615 -177895732 - Tigger3(Golem) DNA MER2_type -137 2892 2772 288 197 0 30 chr4 24432619 24432685 -177895662 - Tigger3(Golem) DNA MER2_type -2895 134 71 2134 109 0 3 chr4 24432731 24433015 -177895332 - AluSg SINE Alu -27 283 1 388 238 38 0 chr4 24433015 24433095 -177895252 - Tigger3(Golem) DNA MER2_type -2946 83 1 1384 219 36 71 chr4 24433097 24433699 -177894648 - L1M4 LINE L1 -907 5308 4728 1811 195 0 3 chr4 24433712 24434020 -177894327 - AluJb SINE Alu 0 312 6 507 164 188 0 chr4 24434023 24434188 -177894159 - L1MEc LINE L1 -3174 3041 2846 2811 222 55 23 chr4 24434237 24434966 -177893381 - MER21B LTR ERV1 -107 756 5 1803 269 26 72 chr4 24434973 24435758 -177892589 - L1MEc LINE L1 -3366 2849 2228 6271 81 50 0 chr4 24435758 24436676 -177891671 - L1PA8A LINE L1 0 6131 5214 1803 269 26 72 chr4 24436676 24437592 -177890755 - L1MEc LINE L1 -3987 2228 1271 205 118 39 0 chr4 24437634 24437685 -177890662 + (TA)n Simple_repeat Simple_repeat 1 53 0 1383 199 44 58 chr4 24437694 24437816 -177890531 - MLT1B LTR MaLR 0 390 268 1439 136 174 8 chr4 24437816 24438081 -177890266 + AluSg SINE Alu 1 305 0 1383 199 44 58 chr4 24438081 24438319 -177890028 - MLT1B LTR MaLR -122 268 34 180 111 0 0 chr4 24438679 24438706 -177889641 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 278 277 0 21 chr4 24439819 24439913 -177888434 + CT-rich Low_complexity Low_complexity 1 92 0 2051 189 58 5 chr4 24440267 24440684 -177887663 + MLT1C LTR MaLR 29 467 0 706 222 73 18 chr4 24440958 24441232 -177887115 + L1MB7 LINE L1 3776 4059 -2087 1569 224 22 5 chr4 24441235 24441645 -177886702 + L1MB7 LINE L1 4716 5132 -1014 1479 245 93 21 chr4 24441654 24442139 -177886208 - MLT2B1 LTR ERVL 0 520 1 1029 171 40 16 chr4 24442142 24442393 -177885954 + L1MB7 LINE L1 5144 5400 -746 1373 253 67 5 chr4 24442393 24442764 -177885583 - MSTD LTR MaLR -2 394 1 5388 223 81 82 chr4 24442764 24444501 -177883846 - MSTD-int LTR MaLR 0 1735 2 1442 201 98 24 chr4 24444503 24444872 -177883475 - MSTD LTR MaLR 0 396 1 2151 184 86 65 chr4 24444872 24445513 -177882834 + L1MB7 LINE L1 5398 6051 -133 1055 203 189 25 chr4 24445515 24445959 -177882388 + Zaphod DNA AcHobo 311 827 -3204 1391 242 48 5 chr4 24446092 24446509 -177881838 + Zaphod DNA AcHobo 3596 4030 -1 307 167 30 0 chr4 24447033 24447099 -177881248 - MLT1D LTR MaLR -8 497 430 592 173 113 40 chr4 24447234 24447384 -177880963 + MLT1A1 LTR MaLR 1 161 -204 4530 22 5 2 chr4 24447515 24448066 -177880281 - L1PA3 LINE L1 -108 6047 5495 517 211 29 0 chr4 24448456 24448467 -177879880 + MER5A DNA MER1_type 6 19 -170 205 273 100 36 chr4 24448467 24448577 -177879770 - MER5A DNA MER1_type -2 187 71 1525 214 7 0 chr4 24448727 24449012 -177879335 - AluJo SINE Alu -25 287 1 2101 135 3 0 chr4 24450115 24450419 -177877928 - AluSq SINE Alu -8 305 1 2015 135 3 0 chr4 24450499 24450811 -177877536 - L1PA13 LINE L1 -2 6161 5849 249 185 13 0 chr4 24451823 24451878 -177876469 + L2 LINE L2 3214 3313 0 1961 205 54 14 chr4 24452418 24452862 -177875485 - MLT1C LTR MaLR 0 467 6 892 203 53 25 chr4 24454217 24454498 -177873849 - L1MC5 LINE L1 -363 7598 7310 309 240 0 0 chr4 24454498 24454594 -177873753 + CT-rich Low_complexity Low_complexity 2 97 0 430 261 63 9 chr4 24457962 24458073 -177870274 + MIR SINE MIR 30 146 -62 569 275 64 34 chr4 24458368 24458664 -177869683 - MLT1L LTR MaLR -2 613 225 22 0 0 0 chr4 24459065 24459087 -177869260 + AT_rich Low_complexity Low_complexity 1 22 0 225 296 34 54 chr4 24459433 24459493 -177868854 - MIR SINE MIR -3 259 199 1483 202 10 3 chr4 24459493 24459785 -177868562 - AluJb SINE Alu -18 294 1 225 296 34 54 chr4 24459785 24459915 -177868432 - MIR SINE MIR -63 199 12 290 294 157 0 chr4 24459948 24460050 -177868297 - L2 LINE L2 -2 3270 3153 664 185 23 0 chr4 24460308 24460438 -177867909 + L1M4c LINE L1 2400 2532 -4317 * 3243 259 28 9 chr4 24460409 24461409 -177866938 + L1M4c LINE L1 2754 3776 -3072 2561 164 5 87 chr4 24461843 24462409 -177865938 + MLT2B1 LTR ERVL 1 520 0 537 312 19 13 chr4 24462413 24462567 -177865780 + MIR SINE MIR 24 178 -84 238 253 24 85 chr4 24463021 24463195 -177865152 - MIR3 SINE MIR -75 133 2 556 234 5 93 chr4 24463349 24463554 -177864793 + MIR SINE MIR 4 190 -72 517 250 129 21 chr4 24463557 24463697 -177864650 + MER5A DNA MER1_type 32 186 -3 300 219 14 55 chr4 24463703 24463776 -177864571 + MIR SINE MIR 193 262 0 227 371 0 11 chr4 24463908 24463997 -177864350 + L2 LINE L2 3221 3308 -5 468 51 0 0 chr4 24464695 24464754 -177863593 + (CAT)n Simple_repeat Simple_repeat 2 60 0 493 322 28 16 chr4 24464756 24464972 -177863375 - MIR SINE MIR -13 249 33 816 266 136 51 chr4 24465949 24466419 -177861928 + MLT1J LTR MaLR 1 510 -1 336 200 80 0 chr4 24466421 24466496 -177861851 - MER117 DNA MER1_type -113 84 4 270 274 77 51 chr4 24466525 24466642 -177861705 + L2 LINE L2 3153 3272 0 1027 216 134 20 chr4 24466834 24467088 -177861259 + MLT1C LTR MaLR 185 467 0 244 353 144 7 chr4 24467468 24467607 -177860740 - MER5A DNA MER1_type -23 166 9 288 0 0 0 chr4 24468021 24468053 -177860294 + (CA)n Simple_repeat Simple_repeat 2 33 0 418 150 110 20 chr4 24468368 24468468 -177859879 + MLT1B-int LTR MaLR 1262 1370 -1 900 175 26 0 chr4 24468472 24468626 -177859721 + MLT1B LTR MaLR 6 163 -227 290 317 183 24 chr4 24468907 24469235 -177859112 + L2 LINE L2 2385 2764 -550 406 259 27 0 chr4 24469983 24470088 -177858259 + MIR SINE MIR 29 139 -95 303 133 0 0 chr4 24470662 24470707 -177857640 + Alu SINE Alu 3 47 -255 460 296 75 5 chr4 24470882 24471068 -177857279 + MLT1L LTR MaLR 413 611 -4 2096 95 87 38 chr4 24471254 24471601 -177856746 + THE1B LTR MaLR 1 364 0 619 277 43 0 chr4 24471601 24471785 -177856562 + MIR3 SINE MIR 7 198 -10 196 247 210 0 chr4 24472200 24472281 -177856066 + MIR SINE MIR 158 255 -7 589 308 112 58 chr4 24472830 24473431 -177854916 + L2 LINE L2 2624 3272 0 415 333 41 7 chr4 24474364 24474511 -177853836 - MIR3 SINE MIR -5 203 52 235 277 0 109 chr4 24474603 24474722 -177853625 + L2 LINE L2 2932 3037 -235 796 181 52 7 chr4 24476287 24476442 -177851905 - MIR SINE MIR -61 201 40 337 252 44 52 chr4 24476616 24476751 -177851596 + L2 LINE L2 3179 3312 -1 483 101 0 0 chr4 24476850 24476929 -177851418 + (TG)n Simple_repeat Simple_repeat 2 80 0 243 258 56 22 chr4 24477590 24477679 -177850668 - MIR3 SINE MIR -23 185 94 680 266 62 37 chr4 24478725 24478969 -177849378 + MIR SINE MIR 5 254 -8 24 39 0 0 chr4 24480054 24480080 -177848267 + AT_rich Low_complexity Low_complexity 1 26 0 577 304 88 34 chr4 24481906 24482294 -177846053 + MLT1L LTR MaLR 196 604 -11 246 180 56 101 chr4 24482295 24482384 -177845963 - MLT1J2 LTR MaLR -1 449 365 285 323 120 0 chr4 24482457 24482590 -177845757 - MLT1J2 LTR MaLR -238 212 64 333 214 56 11 chr4 24482756 24482845 -177845502 + L1ME3A LINE L1 6078 6170 0 1694 175 3 14 chr4 24482849 24483146 -177845201 + AluJo SINE Alu 1 294 -18 2052 201 29 12 chr4 24483286 24483705 -177844642 - MSTB LTR MaLR 0 426 1 520 218 26 26 chr4 24484287 24484443 -177843904 + MER103 DNA DNA 1 156 -10 262 305 85 25 chr4 24484532 24484650 -177843697 + MIR3 SINE MIR 30 154 -54 275 184 26 79 chr4 24484764 24484840 -177843507 + MLT1L LTR MaLR 1 72 -543 210 118 0 0 chr4 24485351 24485385 -177842962 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 265 275 22 0 chr4 24487490 24487581 -177840766 + (TG)n Simple_repeat Simple_repeat 2 94 0 294 206 309 0 chr4 24487951 24488048 -177840299 + L2 LINE L2 3146 3272 0 479 270 137 17 chr4 24489460 24489760 -177838587 - L2 LINE L2 -169 3144 2809 343 191 16 0 chr4 24490048 24490111 -177838236 - MLT1J2 LTR MaLR -44 406 343 383 238 81 64 chr4 24490157 24490329 -177838018 - MLT1J2 LTR MaLR 0 450 276 352 284 95 34 chr4 24490455 24490603 -177837744 - MIR SINE MIR -71 191 35 447 268 14 49 chr4 24491519 24491661 -177836686 + MIR SINE MIR 123 259 -3 847 279 167 35 chr4 24492902 24493185 -177835162 + L2 LINE L2 2853 3206 -107 2926 118 12 2 chr4 24493185 24493608 -177834739 + MSTA LTR MaLR 1 427 -1 847 279 167 35 chr4 24493608 24493726 -177834621 + L2 LINE L2 3206 3307 -6 267 79 0 0 chr4 24493816 24493854 -177834493 + (CA)n Simple_repeat Simple_repeat 1 38 0 24 0 0 0 chr4 24494009 24494033 -177834314 + AT_rich Low_complexity Low_complexity 1 24 0 33 0 0 0 chr4 24494556 24494589 -177833758 + AT_rich Low_complexity Low_complexity 1 33 0 2029 174 34 11 chr4 24495160 24495510 -177832837 - MLT1A1 LTR MaLR -7 358 1 351 294 238 0 chr4 24495511 24495654 -177832693 - MER5A DNA MER1_type 0 189 13 532 267 82 67 chr4 24496048 24496303 -177832044 + MIR SINE MIR 3 261 -1 2509 250 15 10 chr4 24496590 24497198 -177831149 + L1ME2 LINE L1 5483 6093 -71 249 221 137 11 chr4 24497325 24497420 -177830927 + L1MC4 LINE L1 7924 8030 -12 493 304 38 71 chr4 24497483 24497987 -177830360 + L2 LINE L2 2791 3272 0 210 37 0 0 chr4 24498081 24498108 -177830239 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 383 216 0 0 chr4 24498428 24498502 -177829845 - MIR SINE MIR -68 140 67 257 307 57 11 chr4 24498555 24498643 -177829704 - L2 LINE L2 -29 3243 3152 1166 250 156 9 chr4 24498704 24499044 -177829303 - LTR16C LTR ERVL -2 489 100 218 341 0 12 chr4 24499734 24499816 -177828531 - L2 LINE L2 0 3272 3192 378 134 0 0 chr4 24499932 24499999 -177828348 + L1MC2 LINE L1 6277 6343 -1 25 0 0 0 chr4 24500021 24500046 -177828301 + AT_rich Low_complexity Low_complexity 1 25 0 733 232 41 14 chr4 24500806 24501024 -177827323 + MER63C DNA MER1_type 5 228 -702 1758 120 55 118 chr4 24501024 24501424 -177826923 - THE1C LTR MaLR 0 375 1 1433 244 47 12 chr4 24501424 24502072 -177826275 + MER63C DNA MER1_type 224 930 0 214 328 0 0 chr4 24502075 24502133 -177826214 - MIR SINE MIR -157 105 48 382 359 99 36 chr4 24502623 24503085 -177825262 + L1MEd LINE L1 3 493 -5626 * 504 263 134 0 chr4 24503060 24503239 -177825108 + HAL1 LINE L1 1555 1757 -733 351 109 36 0 chr4 24503272 24503327 -177825020 - THE1C LTR MaLR 0 375 319 208 312 21 21 chr4 24504708 24504801 -177823546 - MIR SINE MIR -74 188 96 963 276 91 16 chr4 24504832 24505263 -177823084 - LTR16B LTR ERVL -1 463 1 189 74 0 0 chr4 24505269 24505296 -177823051 + (TC)n Simple_repeat Simple_repeat 1 27 0 1634 103 126 8 chr4 24505582 24505845 -177822502 + AluSg1 SINE Alu 1 294 -15 1343 146 139 38 chr4 24506303 24506590 -177821757 + THE1C LTR MaLR 60 375 0 346 285 201 35 chr4 24507173 24507317 -177821030 + MIR SINE MIR 53 220 -42 197 297 109 0 chr4 24507512 24507576 -177820771 - MIR3 SINE MIR -6 202 132 2163 170 10 31 chr4 24507608 24508025 -177820322 - MLT2D LTR ERVL -6 408 1 185 294 153 0 chr4 24508301 24508386 -177819961 + L2 LINE L2 3144 3241 -31 455 201 250 7 chr4 24509100 24509244 -177819103 + MIR3 SINE MIR 16 194 -14 512 268 52 20 chr4 24509863 24510016 -177818331 - MIR SINE MIR 0 262 105 681 231 115 60 chr4 24510029 24510493 -177817854 - LTR33A LTR ERVL -2 521 8 613 262 92 0 chr4 24511028 24511234 -177817113 - LTR16C LTR ERVL -2 489 265 204 206 64 19 chr4 24512600 24512678 -177815669 + MIR SINE MIR 61 135 -73 392 293 16 8 chr4 24513320 24513443 -177814904 + MIR SINE MIR 20 143 -65 868 258 77 14 chr4 24514535 24514756 -177813591 - MIR SINE MIR -21 241 7 194 383 56 0 chr4 24516226 24516333 -177812014 - L2 LINE L2 -19 3253 3141 305 265 21 21 chr4 24516530 24516676 -177811671 - HERVL68 LTR ERVL -257 2780 2723 370 207 48 53 chr4 24517021 24517156 -177811191 + LTR33 LTR ERVL 105 240 -281 405 305 28 0 chr4 24517184 24517325 -177811022 + LTR33 LTR ERVL 327 471 -50 738 200 9 4 chr4 24517494 24517732 -177810615 + (CAT)n Simple_repeat Simple_repeat 1 239 0 322 325 0 25 chr4 24517734 24517854 -177810493 + (CACCAT)n Simple_repeat Simple_repeat 6 122 0 543 288 13 7 chr4 24517938 24518091 -177810256 - MIR SINE MIR -1 261 108 255 356 148 0 chr4 24519399 24519500 -177808847 - MIR SINE MIR -74 134 19 211 389 33 0 chr4 24520099 24520189 -177808158 + MIR SINE MIR 89 181 -81 554 233 49 12 chr4 24520387 24520728 -177807619 + MLT1G3 LTR MaLR 153 595 0 188 237 0 0 chr4 24520746 24520784 -177807563 + L2 LINE L2 3198 3235 -37 333 314 65 16 chr4 24520998 24521122 -177807225 - MIR SINE MIR -37 225 96 303 257 10 69 chr4 24521553 24521654 -177806693 + MER106B DNA MER1_type 9 103 -956 * 432 162 90 27 chr4 24521650 24521761 -177806586 + MER106B DNA MER1_type 942 1059 0 244 315 105 11 chr4 24522992 24523173 -177805174 + MIR SINE MIR 36 233 -29 270 233 78 65 chr4 24524316 24524608 -177803739 + L1ME3A LINE L1 5606 5952 -218 202 281 18 0 chr4 24525205 24525262 -177803085 + GA-rich Low_complexity Low_complexity 1 58 0 210 188 20 79 chr4 24525281 24525382 -177802965 + (CAGAGA)n Simple_repeat Simple_repeat 2 96 0 290 135 0 54 chr4 24525572 24525646 -177802701 + L1MA8 LINE L1 6218 6287 -4 189 0 0 0 chr4 24525766 24525787 -177802560 + (GA)n Simple_repeat Simple_repeat 1 21 0 240 273 30 76 chr4 24525963 24526095 -177802252 - MIR3 SINE MIR 0 208 83 304 159 302 0 chr4 24526511 24526574 -177801773 + MER20 DNA MER1_type 1 82 -137 337 240 168 24 chr4 24527601 24527726 -177800621 + MIR SINE MIR 20 162 -100 230 185 74 37 chr4 24528533 24528587 -177799760 - MLT1A2 LTR MaLR 0 428 373 1035 127 0 4 chr4 24528593 24528836 -177799511 + (TA)n Simple_repeat Simple_repeat 2 243 0 523 147 35 86 chr4 24529281 24529397 -177798950 + MER81 DNA DNA 1 110 -4 235 0 0 54 chr4 24529950 24529987 -177798360 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 374 323 36 55 chr4 24530842 24531062 -177797285 - L1MC4 LINE L1 -1 8041 7826 3476 222 85 25 chr4 24531120 24533079 -177795268 - L1ME2 LINE L1 -23 6141 4063 641 180 94 144 chr4 24533084 24533340 -177795007 + LTR40a LTR ERVL 6 248 -271 1022 188 21 59 chr4 24533352 24533533 -177794814 - MLT1A2 LTR MaLR -144 230 59 2137 131 48 31 chr4 24533533 24533891 -177794456 - THE1B LTR MaLR 0 364 1 1022 188 21 59 chr4 24533891 24533948 -177794399 - MLT1A2 LTR MaLR -315 59 1 1764 244 102 7 chr4 24533963 24534540 -177793807 - L1ME2 LINE L1 -2567 3579 2948 306 0 0 0 chr4 24535401 24535435 -177792912 + (CA)n Simple_repeat Simple_repeat 2 35 0 249 83 0 0 chr4 24535485 24535521 -177792826 + (CA)n Simple_repeat Simple_repeat 1 36 0 207 69 0 0 chr4 24535565 24535594 -177792753 + (CA)n Simple_repeat Simple_repeat 2 30 0 412 164 0 0 chr4 24535666 24535727 -177792620 - MER5B DNA MER1_type -5 173 113 2558 248 53 18 chr4 24535727 24536542 -177791805 + L1ME3A LINE L1 5328 6170 0 401 268 49 24 chr4 24536542 24536665 -177791682 - MER5B DNA MER1_type -48 130 5 371 299 51 65 chr4 24536686 24536903 -177791444 + MIR SINE MIR 34 247 -15 363 311 80 0 chr4 24537677 24537828 -177790519 + MIR3 SINE MIR 30 192 -16 276 278 185 0 chr4 24539926 24540034 -177788313 - MLT1L LTR MaLR 0 615 488 * 348 253 0 22 chr4 24540027 24540118 -177788229 - MLT1H1 LTR MaLR -444 111 23 277 233 0 0 chr4 24540137 24540197 -177788150 + MLT1H LTR MaLR 477 536 -13 182 295 123 57 chr4 24540860 24540982 -177787365 - L2 LINE L2 -7 3265 3136 450 267 30 0 chr4 24541035 24541136 -177787211 - L2 LINE L2 -10 3303 3200 770 300 99 0 chr4 24541325 24541618 -177786729 + LTR16C LTR ERVL 139 460 -31 22 80 0 0 chr4 24542678 24542728 -177785619 + AT_rich Low_complexity Low_complexity 1 50 0 1815 97 0 50 chr4 24542910 24543244 -177785103 + AluSx SINE Alu 1 319 0 1379 245 34 58 chr4 24543249 24543661 -177784686 + MLT1J LTR MaLR 110 511 0 704 257 68 42 chr4 24543663 24543974 -177784373 + MER102b DNA MER1_type 23 341 0 252 365 9 19 chr4 24544201 24544308 -177784039 - MIR SINE MIR -68 140 35 216 0 0 0 chr4 24544388 24544412 -177783935 + (A)n Simple_repeat Simple_repeat 1 24 0 243 264 14 42 chr4 24544620 24544692 -177783655 + L2 LINE L2 3231 3300 -13 180 0 0 0 chr4 24544692 24544712 -177783635 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 1017 254 44 84 chr4 24546514 24546920 -177781427 + LTR16B LTR ERVL 1 390 -74 254 236 364 0 chr4 24547119 24547229 -177781118 - L2 LINE L2 -370 2944 2795 295 317 17 17 chr4 24547502 24547622 -177780725 + MIR SINE MIR 35 154 -108 310 279 0 0 chr4 24547632 24547700 -177780647 - MIR SINE MIR -1 261 194 525 310 14 8 chr4 24547953 24548103 -177780244 - MIR SINE MIR -63 145 17 478 316 26 7 chr4 24548253 24548405 -177779942 - L2 LINE L2 0 3272 3118 207 324 15 0 chr4 24548933 24549001 -177779346 + MIR SINE MIR 194 262 0 395 276 29 9 chr4 24550264 24550410 -177777937 - MIR SINE MIR -63 145 12 423 0 0 0 chr4 24550491 24550538 -177777809 + (CA)n Simple_repeat Simple_repeat 1 47 0 224 218 36 18 chr4 24550702 24550757 -177777590 - L2 LINE L2 -25 3247 3192 220 330 77 0 chr4 24551161 24551252 -177777095 + L2 LINE L2 3202 3299 -14 267 103 0 0 chr4 24551252 24551291 -177777056 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 281 328 12 20 chr4 24551959 24552108 -177776239 + GA-rich Low_complexity Low_complexity 4 242 0 204 146 0 24 chr4 24552709 24552750 -177775597 + (TG)n Simple_repeat Simple_repeat 2 41 0 198 91 0 0 chr4 24552949 24552982 -177775365 + (CA)n Simple_repeat Simple_repeat 2 34 0 2422 155 57 88 chr4 24553454 24554088 -177774259 + LTR18B LTR ERVL 1 614 0 315 291 45 18 chr4 24554196 24554306 -177774041 + MIR SINE MIR 77 189 -73 543 333 108 11 chr4 24554430 24554781 -177773566 + L3 LINE CR1 1128 1512 -65 1071 269 166 9 chr4 24555283 24555314 -177773033 + LTR33A LTR ERVL 1 26 -497 1495 194 10 102 chr4 24555314 24555716 -177772631 - MLT1A1 LTR MaLR 0 365 1 1071 269 166 9 chr4 24555716 24556123 -177772224 + LTR33A LTR ERVL 26 508 -15 189 234 0 0 chr4 24557114 24557178 -177771169 + (CCA)n Simple_repeat Simple_repeat 1 64 0 2221 102 3 0 chr4 24557495 24557788 -177770559 - AluSq SINE Alu -19 294 1 559 270 78 64 chr4 24557965 24558432 -177769915 - LTR33A LTR ERVL -17 506 20 282 349 110 26 chr4 24558577 24559030 -177769317 - L2 LINE L2 -453 2861 2371 1985 181 53 68 chr4 24559829 24560303 -177768044 - MLT1C LTR MaLR 0 467 1 1303 188 14 137 chr4 24560565 24560981 -177767366 - MLT1A1 LTR MaLR 0 365 1 517 259 41 35 chr4 24561055 24561225 -177767122 - MIR3 SINE MIR -7 201 31 277 279 154 37 chr4 24561814 24561950 -177766397 - MIR3 SINE MIR -6 202 51 2168 222 76 27 chr4 24562018 24562571 -177765776 + MLT1E LTR MaLR 1 580 -13 910 188 47 60 chr4 24562695 24562929 -177765418 - MIR SINE MIR -1 261 31 485 219 118 22 chr4 24563043 24563221 -177765126 + MIR SINE MIR 63 257 -5 6107 49 1 23 chr4 24563490 24564227 -177764120 - L1PA3 LINE L1 -3 6152 5432 683 251 11 38 chr4 24564229 24564412 -177763935 - MER5B DNA MER1_type 0 178 1 220 214 0 0 chr4 24564721 24564763 -177763584 + CT-rich Low_complexity Low_complexity 1 42 0 373 221 55 24 chr4 24564893 24565020 -177763327 - HAL1b LINE L1 -887 461 331 239 291 57 7 chr4 24565188 24565329 -177763018 - L1MEd LINE L1 -5002 1117 970 2194 139 67 14 chr4 24565513 24565859 -177762488 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr4 24566338 24566359 -177761988 + AT_rich Low_complexity Low_complexity 1 21 0 5604 134 12 22 chr4 24566359 24567339 -177761008 - L1MA4A LINE L1 0 6303 5197 2546 111 3 37 chr4 24567440 24567817 -177760530 - THE1B LTR MaLR 0 364 1 24 0 0 0 chr4 24568155 24568179 -177760168 + AT_rich Low_complexity Low_complexity 1 24 0 311 272 25 0 chr4 24569172 24569253 -177759094 - MIR3 SINE MIR -6 202 120 1846 124 0 8 chr4 24570041 24570306 -177758041 - AluSg SINE Alu -8 302 40 1671 300 34 11 chr4 24570962 24571495 -177756852 + HERVL40 LTR ERVL 3301 3845 -1685 2320 251 54 18 chr4 24571500 24572113 -177756234 + HERVL40 LTR ERVL 3946 4580 -950 232 242 11 32 chr4 24572159 24572254 -177756093 + T-rich Low_complexity Low_complexity 2 94 0 192 250 91 0 chr4 24573027 24573071 -177755276 + MIR SINE MIR 123 170 -92 224 240 40 13 chr4 24573603 24573678 -177754669 + CT-rich Low_complexity Low_complexity 3 79 0 1286 100 0 6 chr4 24573903 24574083 -177754264 - L1P4 LINE L1 -391 5772 5594 413 345 6 18 chr4 24574589 24574760 -177753587 + GA-rich Low_complexity Low_complexity 6 174 0 192 250 91 0 chr4 24575889 24575933 -177752414 + MIR SINE MIR 123 170 -92 255 229 14 29 chr4 24576465 24576535 -177751812 + CT-rich Low_complexity Low_complexity 1 69 0 384 232 89 27 chr4 24577163 24577275 -177751072 + MER115 DNA AcHobo 489 607 -86 229 274 28 28 chr4 24577295 24577401 -177750946 - L1MC5 LINE L1 -809 7152 7047 637 239 50 25 chr4 24577488 24577726 -177750621 - L1M4 LINE L1 -3724 2422 2179 1198 193 9 21 chr4 24577759 24577992 -177750355 - AluJo SINE Alu -25 287 58 337 197 40 0 chr4 24577993 24578069 -177750278 + Zaphod DNA AcHobo 3953 4031 0 1373 161 49 176 chr4 24578654 24579189 -177749158 + MLT1C LTR MaLR 1 467 0 378 278 154 6 chr4 24580166 24580335 -177748012 + MIR SINE MIR 11 204 -58 230 328 78 16 chr4 24581057 24581185 -177747162 - L2 LINE L2 -5 3267 3132 1618 202 29 61 chr4 24581216 24581626 -177746721 - MLT2C1 LTR ERVL 0 397 1 232 281 22 0 chr4 24582088 24582177 -177746170 + (TA)n Simple_repeat Simple_repeat 1 91 0 376 277 50 7 chr4 24582189 24582330 -177746017 + MER103 DNA DNA 14 160 -6 220 264 44 66 chr4 24582487 24582578 -177745769 - L3 LINE CR1 -17 1560 1472 1320 165 19 30 chr4 24582918 24583184 -177745163 - L1MA9 LINE L1 -114 6198 5936 * 5790 99 4 14 chr4 24583177 24583659 -177744688 - L1PA13 LINE L1 -2 6161 5690 2077 141 3 0 chr4 24583659 24583965 -177744382 - AluSx SINE Alu -5 307 1 5790 99 4 14 chr4 24583965 24584319 -177744028 - L1PA13 LINE L1 -473 5690 5334 1628 152 11 7 chr4 24584316 24584593 -177743754 - L1MA9 LINE L1 -392 5920 5643 * 4621 40 0 0 chr4 24584633 24585157 -177743190 - L1PA4 LINE L1 -3 6152 5629 567 281 64 82 chr4 24585162 24585554 -177742793 + L2 LINE L2 2929 3313 0 2713 121 6 6 chr4 24586728 24587092 -177741255 + THE1B LTR MaLR 1 364 0 607 326 74 18 chr4 24587122 24587515 -177740832 + L2 LINE L2 2187 2601 -713 1620 189 99 19 chr4 24587950 24588272 -177740075 - MER7A DNA MER2_type 0 346 1 663 279 74 10 chr4 24588289 24588303 -177740044 + L1ME3A LINE L1 5634 5646 -524 1139 184 114 0 chr4 24588303 24588504 -177739843 + MER58A DNA MER1_type 1 224 0 663 279 74 10 chr4 24588504 24588787 -177739560 + L1ME3A LINE L1 5646 5950 -220 408 292 139 28 chr4 24588907 24589294 -177739053 - L1M4 LINE L1 -920 5226 4797 302 284 37 0 chr4 24589298 24589379 -177738968 + L2 LINE L2 2622 2705 -609 208 219 0 0 chr4 24589379 24589420 -177738927 + (TG)n Simple_repeat Simple_repeat 2 42 0 195 298 74 33 chr4 24589529 24589650 -177738697 - MIR SINE MIR -112 150 25 23 33 0 0 chr4 24589767 24589797 -177738550 + AT_rich Low_complexity Low_complexity 1 30 0 2381 71 7 23 chr4 24589840 24590150 -177738197 + L1PA10 LINE L1 5862 6166 -2 3279 164 47 16 chr4 24590409 24590983 -177737364 + MER6A DNA MER2_type 1 592 -13 850 206 181 36 chr4 24591432 24591708 -177736639 - LOR1a LTR ERV1 0 497 182 351 211 0 0 chr4 24591693 24591764 -177736583 - LOR1a LTR ERV1 -189 308 238 * 611 297 160 37 chr4 24591856 24592422 -177735925 + L2 LINE L2 2659 3276 -37 553 384 51 6 chr4 24592710 24593046 -177735301 + L2 LINE L2 2456 2806 -508 234 349 47 0 chr4 24593222 24593308 -177735039 + L2 LINE L2 2436 2525 -789 220 271 102 0 chr4 24593317 24593376 -177734971 - MIR SINE MIR -119 89 25 915 223 48 9 chr4 24593674 24593903 -177734444 - MIR SINE MIR -10 252 15 228 354 73 21 chr4 24594081 24594177 -177734170 + MIR SINE MIR 41 141 -67 21 0 0 0 chr4 24594199 24594220 -177734127 + AT_rich Low_complexity Low_complexity 1 21 0 370 343 55 17 chr4 24594483 24594719 -177733628 + MLT1K LTR MaLR 322 566 -22 399 332 69 22 chr4 24594819 24595096 -177733251 - L2 LINE L2 -469 2845 2556 1846 124 0 8 chr4 24595669 24595934 -177732413 - AluSg SINE Alu -8 302 40 21 57 0 0 chr4 24596283 24596318 -177732029 + AT_rich Low_complexity Low_complexity 1 35 0 553 213 44 0 chr4 24596420 24596556 -177731791 + MIR SINE MIR 120 261 -1 1412 288 93 36 chr4 24596996 24597927 -177730420 - L2 LINE L2 -10 3303 675 3419 110 23 6 chr4 24597927 24598410 -177729937 + LTR3b LTR ERVK 1 491 -9 395 119 0 75 chr4 24598410 24598477 -177729870 + LTR3b LTR ERVK 421 482 -18 * 508 125 0 0 chr4 24598453 24598525 -177729822 + LTR3b LTR ERVK 422 493 -7 1238 302 127 28 chr4 24598526 24599108 -177729239 - L2 LINE L2 -2633 681 42 2788 75 29 3 chr4 24599264 24599610 -177728737 - THE1A LTR MaLR 0 355 1 216 267 116 35 chr4 24599700 24599786 -177728561 - MIR SINE MIR -107 155 63 223 288 76 0 chr4 24599892 24599958 -177728389 + MIR SINE MIR 56 126 -136 927 234 154 46 chr4 24599965 24600336 -177728011 - LTR16B LTR ERVL -32 432 22 1731 230 42 14 chr4 24600404 24600637 -177727710 - L1MB5 LINE L1 0 6174 5942 421 279 31 49 chr4 24600637 24600838 -177727509 - L1MC4a LINE L1 -1879 5929 5731 1808 159 46 13 chr4 24600838 24601140 -177727207 - AluSx SINE Alu 0 312 1 421 279 31 49 chr4 24601140 24601164 -177727183 - L1MC4a LINE L1 -2077 5731 5708 213 154 0 0 chr4 24601433 24601472 -177726875 + T-rich Low_complexity Low_complexity 1 39 0 292 323 38 13 chr4 24601538 24601696 -177726651 + L3b LINE CR1 1304 1465 -118 466 291 135 22 chr4 24601978 24602208 -177726139 + MIR SINE MIR 5 260 -2 249 245 286 10 chr4 24602509 24602607 -177725740 + L2 LINE L2 3187 3311 -2 249 277 36 121 chr4 24602863 24603029 -177725318 - MLT1J LTR MaLR -204 307 156 207 162 0 0 chr4 24603069 24603106 -177725241 + CT-rich Low_complexity Low_complexity 3 39 0 218 158 0 123 chr4 24603199 24603256 -177725091 - MIR SINE MIR -56 152 106 2053 121 3 3 chr4 24603533 24603823 -177724524 - AluSx SINE Alu -22 290 1 849 211 6 22 chr4 24604051 24604231 -177724116 + MER5B DNA MER1_type 1 177 -1 292 296 31 0 chr4 24604820 24604918 -177723429 - MER102b DNA MER1_type -9 332 232 1122 162 17 0 chr4 24605523 24605696 -177722651 - L1PB1 LINE L1 0 6151 5976 2229 116 0 3 chr4 24606404 24606707 -177721640 + AluSq SINE Alu 1 302 -11 4954 60 4 0 chr4 24606960 24607780 -177720567 - L1PA7 LINE L1 -302 5852 5031 212 307 39 39 chr4 24607792 24607919 -177720428 + MIR3 SINE MIR 54 180 -28 661 87 0 0 chr4 24658366 24658458 -177669889 + THE1B LTR MaLR 273 364 0 6718 108 48 48 chr4 24658458 24659584 -177668763 + THE1B-int LTR MaLR 1 1126 -454 820 88 0 0 chr4 24659684 24659786 -177668561 - AluJ/FLAM SINE Alu -210 102 1 186 103 0 0 chr4 24662144 24662173 -177666174 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 486 268 0 24 chr4 24663998 24664125 -177664222 - MLT1K LTR MaLR -349 239 116 1801 65 0 4 chr4 24664291 24664520 -177663827 + AluY SINE Alu 1 228 -83 305 311 89 0 chr4 24664601 24664714 -177663633 + MIR SINE MIR 22 143 -65 24 0 0 0 chr4 24664793 24664817 -177663530 + AT_rich Low_complexity Low_complexity 1 24 0 686 303 52 35 chr4 24664820 24665247 -177663100 - LTR33 LTR ERVL -2 519 9 1522 144 60 4 chr4 24665251 24665501 -177662846 + AluSx SINE Alu 1 264 -48 1015 63 0 0 chr4 24665868 24665995 -177662352 + AluY SINE Alu 184 310 -1 2195 84 0 3 chr4 24666502 24666786 -177661561 - AluSx SINE Alu -7 305 23 709 270 35 5 chr4 24667741 24667941 -177660406 - MER63A DNA MER1_type -4 206 1 27 0 0 0 chr4 24668388 24668415 -177659932 + AT_rich Low_complexity Low_complexity 1 27 0 2257 121 0 0 chr4 24668602 24668909 -177659438 + AluSx SINE Alu 1 307 -5 589 236 14 40 chr4 24669054 24669202 -177659145 - MIR SINE MIR -111 151 8 268 291 97 29 chr4 24669325 24669531 -177658816 + L1ME LINE L1 5677 5896 -274 310 239 39 46 chr4 24669691 24669821 -177658526 + Charlie4 DNA MER1_type 1831 1959 -2 423 321 123 14 chr4 24669968 24670180 -177658167 - MIR SINE MIR -3 259 25 741 297 62 58 chr4 24670336 24670433 -177657914 + LTR33 LTR ERVL 1 96 -425 2288 96 0 3 chr4 24670433 24670725 -177657622 + AluSg SINE Alu 1 291 -19 741 297 62 58 chr4 24670725 24671146 -177657201 + LTR33 LTR ERVL 96 521 0 810 228 5 138 chr4 24671651 24672041 -177656306 - MLT1A1 LTR MaLR -9 356 19 208 421 95 0 chr4 24672226 24672447 -177655900 - L2 LINE L2 -841 2473 2232 413 83 0 0 chr4 24673410 24673470 -177654877 - Alu SINE Alu -251 60 1 1365 205 36 8 chr4 24673470 24673861 -177654486 + MER113 DNA MER1_type? 73 474 -47 199 333 0 0 chr4 24674769 24674841 -177653506 - MIR SINE MIR -12 250 179 205 300 0 17 chr4 24675451 24675511 -177652836 + L3 LINE CR1 1518 1576 -1 415 358 52 0 chr4 24676032 24676166 -177652181 - L3 LINE CR1 -3 1574 1434 1989 162 26 0 chr4 24676830 24677169 -177651178 + MER7A DNA MER2_type 1 346 0 1752 210 21 59 chr4 24678248 24678719 -177649628 + MLT2B1 LTR ERVL 1 453 -67 232 171 0 0 chr4 24678770 24678811 -177649536 + MLT2B1 LTR ERVL 514 554 0 203 233 0 23 chr4 24678872 24678915 -177649432 + L2 LINE L2 3214 3255 -17 322 327 19 10 chr4 24679835 24679939 -177648408 + MIR SINE MIR 41 145 -63 230 290 16 0 chr4 24680183 24680245 -177648102 - MIR SINE MIR -109 153 91 * 795 283 120 33 chr4 24680235 24680627 -177647720 + L2 LINE L2 2882 3307 -6 442 290 34 34 chr4 24680929 24681105 -177647242 + MER5B DNA MER1_type 3 178 0 418 362 181 0 chr4 24681514 24681746 -177646601 - L2 LINE L2 -10 3262 2989 7894 188 30 33 chr4 24681773 24684307 -177644040 + L1PA15-16 LINE L1 1 2303 -4546 1861 99 7 0 chr4 24684308 24684591 -177643756 + L1P4 LINE L1 5406 5690 -476 700 190 19 102 chr4 24684751 24684967 -177643380 - MER58C DNA MER1_type -16 199 2 181 132 132 0 chr4 24685029 24685067 -177643280 - L2 LINE L2 0 3272 3230 325 283 10 30 chr4 24685758 24685857 -177642490 + MIR SINE MIR 46 142 -120 438 129 53 18 chr4 24685994 24686165 -177642182 + (TA)n Simple_repeat Simple_repeat 2 178 0 181 57 57 0 chr4 24686177 24686212 -177642135 + (TA)n Simple_repeat Simple_repeat 1 37 0 300 160 217 75 chr4 24686795 24686901 -177641446 - MIR3 SINE MIR -6 202 82 257 289 117 107 chr4 24686955 24687263 -177641084 - L2 LINE L2 -19 3253 2943 201 258 30 0 chr4 24688936 24689002 -177639345 + (CAA)n Simple_repeat Simple_repeat 2 69 0 377 305 149 50 chr4 24689253 24689574 -177638773 - L2 LINE L2 -5 3267 2915 275 241 181 0 chr4 24689604 24689687 -177638660 - L3 LINE CR1 -584 993 896 505 257 56 0 chr4 24690931 24691075 -177637272 - MIR SINE MIR -70 192 41 207 305 85 76 chr4 24691465 24691583 -177636764 - L2 LINE L2 -10 3262 3144 1794 219 47 7 chr4 24692218 24692662 -177635685 + MLT1C LTR MaLR 6 467 0 247 218 73 0 chr4 24693202 24693257 -177635090 - L2 LINE L2 0 3272 3214 270 222 42 0 chr4 24694323 24694395 -177633952 - HERVL40 LTR ERVL -1510 4020 3946 4025 286 59 6 chr4 24694400 24695657 -177632690 - HERVL40 LTR ERVL -1685 3845 2522 2607 280 36 47 chr4 24695656 24696394 -177631953 - HERVL40 LTR ERVL -3919 1611 887 * 186 43 0 0 chr4 24696394 24696417 -177631930 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2607 280 36 47 chr4 24696417 24696736 -177631611 - HERVL40 LTR ERVL -4643 887 566 548 260 27 130 chr4 24696776 24697145 -177631202 - HERVL40 LTR ERVL -4960 570 240 417 286 143 19 chr4 24697160 24697370 -177630977 - L2 LINE L2 0 3313 3078 201 202 12 36 chr4 24697370 24697454 -177630893 + GA-rich Low_complexity Low_complexity 2 83 0 322 284 37 0 chr4 24697640 24697721 -177630626 + L2 LINE L2 3229 3312 -1 1171 304 64 53 chr4 24698123 24698853 -177629494 - L3 LINE CR1 -206 1371 634 26 0 0 0 chr4 24698930 24698956 -177629391 + AT_rich Low_complexity Low_complexity 1 26 0 418 307 14 7 chr4 24699273 24699413 -177628934 - L2 LINE L2 -4 3309 3169 220 347 11 0 chr4 24699414 24699509 -177628838 + (TATG)n Simple_repeat Simple_repeat 4 99 0 1689 290 135 7 chr4 24699522 24700128 -177628219 + L2 LINE L2 1148 1831 -1483 2314 111 40 3 chr4 24700412 24700763 -177627584 + THE1B LTR MaLR 1 364 0 1466 264 66 39 chr4 24700775 24701322 -177627025 - L1ME3 LINE L1 -208 5954 5361 2248 63 45 0 chr4 24701322 24701609 -177626738 - AluY SINE Alu -11 300 1 1466 264 66 39 chr4 24701609 24702058 -177626289 - L1ME3 LINE L1 -801 5361 4925 830 280 89 25 chr4 24702060 24702385 -177625962 + L2 LINE L2 2968 3313 0 49 43 0 0 chr4 24702522 24702592 -177625755 + AT_rich Low_complexity Low_complexity 1 70 0 304 312 92 9 chr4 24702638 24702747 -177625600 - L2 LINE L2 -1 3271 3154 332 290 138 22 chr4 24703153 24703291 -177625056 - MIR SINE MIR -96 166 13 322 358 24 8 chr4 24703324 24703447 -177624900 - L2 LINE L2 0 3272 3148 542 315 19 6 chr4 24704059 24704221 -177624126 + MIR SINE MIR 74 237 -25 578 121 0 10 chr4 24704268 24704367 -177623980 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 216 277 15 0 chr4 24705452 24705517 -177622830 + (TATATG)n Simple_repeat Simple_repeat 6 71 0 1592 251 105 16 chr4 24705825 24706319 -177622028 - MLT1F LTR MaLR -2 540 3 250 335 160 19 chr4 24706476 24706682 -177621665 - MLT1L LTR MaLR -13 602 368 257 346 71 16 chr4 24707268 24707395 -177620952 + L2 LINE L2 3136 3269 -3 436 271 54 77 chr4 24707630 24707781 -177620566 + MIR SINE MIR 47 193 -69 2304 163 34 17 chr4 24707781 24708199 -177620148 - MSTA LTR MaLR 0 428 4 436 271 54 77 chr4 24708199 24708268 -177620079 + MIR SINE MIR 193 262 0 387 327 0 0 chr4 24708432 24708542 -177619805 + MIR SINE MIR 3 112 -150 1148 255 44 5 chr4 24708542 24708922 -177619425 - MLT1E LTR MaLR 0 593 105 230 308 225 0 chr4 24709059 24709179 -177619168 + MIR SINE MIR 109 255 -7 258 363 47 19 chr4 24710049 24710264 -177618083 + L1ME2 LINE L1 92 312 -6084 912 236 27 95 chr4 24710922 24711116 -177617231 + L1ME2 LINE L1 666 872 -5346 2258 107 0 19 chr4 24711116 24711425 -177616922 + AluSg SINE Alu 1 303 -7 912 236 27 95 chr4 24711425 24711786 -177616561 + L1ME2 LINE L1 872 1181 -5037 4927 277 69 47 chr4 24711814 24715088 -177613259 + L1ME2 LINE L1 1220 4721 -1494 1488 252 50 52 chr4 24715105 24715889 -177612458 + L1ME2 LINE L1 5099 5903 -330 311 275 84 78 chr4 24715898 24716040 -177612307 - MLT1E LTR MaLR -399 143 1 228 284 37 12 chr4 24717166 24717247 -177611100 - MIR SINE MIR -4 258 176 255 326 112 41 chr4 24717447 24717643 -177610704 + LTR33 LTR ERVL 304 513 -8 485 304 68 0 chr4 24717644 24717805 -177610542 - MIR SINE MIR -79 183 12 256 213 0 0 chr4 24718260 24718307 -177610040 + MIR SINE MIR 73 119 -143 192 323 156 0 chr4 24718315 24718411 -177609936 + L2 LINE L2 3203 3313 0 1708 188 119 12 chr4 24718420 24718841 -177609506 - L1MC3 LINE L1 -1 7784 7319 1848 143 176 20 chr4 24718881 24719272 -177609075 + LTR10A LTR ERV1 97 548 -61 472 202 153 0 chr4 24719288 24719412 -177608935 - L1MC3 LINE L1 -463 7322 7180 243 242 15 15 chr4 24719420 24719486 -177608861 - MLT1F1 LTR MaLR -466 101 36 1952 174 33 30 chr4 24719487 24719720 -177608627 - L1MC3 LINE L1 -688 7097 6861 210 37 0 0 chr4 24719720 24719747 -177608600 + (TG)n Simple_repeat Simple_repeat 2 28 0 1952 174 33 30 chr4 24719747 24719910 -177608437 - L1MC3 LINE L1 -924 6861 6700 749 226 137 66 chr4 24720048 24720429 -177607918 - MER113 DNA MER1_type? -113 408 1 1713 177 0 3 chr4 24720432 24720741 -177607606 + AluJb SINE Alu 1 308 0 21 36 0 0 chr4 24721171 24721199 -177607148 + AT_rich Low_complexity Low_complexity 1 28 0 382 287 102 57 chr4 24721702 24722031 -177606316 + MLT1G LTR MaLR 19 375 -180 871 326 51 6 chr4 24722201 24722517 -177605830 + MLT1I LTR MaLR 31 360 -49 208 374 79 22 chr4 24722607 24722834 -177605513 + L2 LINE L2 2841 3080 -192 677 339 36 0 chr4 24722916 24723140 -177605207 - MIR SINE MIR -30 232 1 251 311 92 17 chr4 24723187 24723306 -177605041 + L2 LINE L2 3168 3295 -18 228 67 0 0 chr4 24724741 24724771 -177603576 + (TG)n Simple_repeat Simple_repeat 1 30 0 200 378 49 7 chr4 24724814 24724957 -177603390 - MIR3 SINE MIR -41 167 19 1990 119 7 0 chr4 24725946 24726231 -177602116 - AluSx SINE Alu -25 287 1 2093 126 0 0 chr4 24727428 24727721 -177600626 - AluSx SINE Alu -19 293 1 313 372 82 10 chr4 24727939 24728135 -177600212 + L2 LINE L2 2561 2770 -544 276 272 11 0 chr4 24729139 24729231 -177599116 + (TA)n Simple_repeat Simple_repeat 1 93 0 326 275 132 0 chr4 24730690 24730781 -177597566 + L2 LINE L2 3160 3262 -10 998 363 81 15 chr4 24730913 24731937 -177596410 - L2 LINE L2 -94 3219 2130 180 0 0 0 chr4 24732637 24732657 -177595690 + (TG)n Simple_repeat Simple_repeat 2 21 0 1533 112 5 0 chr4 24732815 24733021 -177595326 - AluSq SINE Alu -106 207 1 225 273 182 38 chr4 24733045 24733177 -177595170 - L2 LINE L2 0 3313 3163 23 33 0 0 chr4 24733177 24733207 -177595140 + AT_rich Low_complexity Low_complexity 1 30 0 32 26 0 0 chr4 24733511 24733550 -177594797 + AT_rich Low_complexity Low_complexity 1 39 0 338 248 32 70 chr4 24733550 24733707 -177594640 + MLT1I LTR MaLR 377 527 -22 215 312 142 14 chr4 24733876 24734017 -177594330 + L2 LINE L2 2996 3154 -159 336 64 0 0 chr4 24734036 24734083 -177594264 + (CA)n Simple_repeat Simple_repeat 2 48 0 300 115 0 0 chr4 24734107 24734159 -177594188 + MLT2C2 LTR ERVL 1 52 -412 2464 90 26 32 chr4 24735258 24735635 -177592712 - THE1C LTR MaLR 0 375 1 398 320 44 63 chr4 24735878 24736194 -177592153 + MLT1I LTR MaLR 68 377 -32 258 217 0 60 chr4 24736934 24737017 -177591330 - L1MC4 LINE L1 -1351 6691 6614 230 193 18 0 chr4 24737017 24737074 -177591273 + (TA)n Simple_repeat Simple_repeat 2 59 0 270 0 0 0 chr4 24737582 24737612 -177590735 + (CA)n Simple_repeat Simple_repeat 2 31 0 574 219 51 29 chr4 24738555 24738692 -177589655 + MIR SINE MIR 65 204 -58 235 241 35 0 chr4 24738725 24738783 -177589564 + L2 LINE L2 3001 3060 -212 198 240 40 0 chr4 24738965 24739015 -177589332 + L2 LINE L2 3248 3299 -14 213 39 0 0 chr4 24739018 24739044 -177589303 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 848 313 25 4 chr4 24739085 24739325 -177589022 - MIR SINE MIR -5 257 13 216 67 0 0 chr4 24739627 24739657 -177588690 + (CA)n Simple_repeat Simple_repeat 1 30 0 25 31 0 0 chr4 24740059 24740091 -177588256 + AT_rich Low_complexity Low_complexity 1 32 0 238 317 69 30 chr4 24740098 24740199 -177588148 - MIR SINE MIR -137 125 21 22 0 0 0 chr4 24740403 24740425 -177587922 + AT_rich Low_complexity Low_complexity 1 22 0 319 208 108 8 chr4 24740452 24740572 -177587775 - L1ME4a LINE L1 -33 6088 5957 371 317 81 5 chr4 24740900 24741086 -177587261 + MIR SINE MIR 21 220 -42 276 261 11 49 chr4 24741090 24741210 -177587137 - L1ME4a LINE L1 -517 5604 5491 209 290 0 32 chr4 24741712 24741774 -177586573 - L2 LINE L2 0 3272 3213 746 268 72 23 chr4 24741799 24742105 -177586242 + Charlie4a DNA MER1_type 21 341 -167 220 356 136 0 chr4 24743847 24743965 -177584382 + MIR3 SINE MIR 14 147 -61 203 88 29 0 chr4 24744074 24744108 -177584239 + (TATG)n Simple_repeat Simple_repeat 2 36 0 266 267 19 9 chr4 24744157 24744262 -177584085 + (TA)n Simple_repeat Simple_repeat 2 107 0 2321 69 0 10 chr4 24745315 24745618 -177582729 - AluY SINE Alu -11 300 1 404 336 49 0 chr4 24745663 24745806 -177582541 + L2 LINE L2 3163 3312 -1 301 288 25 25 chr4 24746053 24746171 -177582176 - L1MC/D LINE L1 -2148 5660 5543 22 88 0 0 chr4 24746333 24746390 -177581957 + AT_rich Low_complexity Low_complexity 1 57 0 404 297 15 49 chr4 24746437 24746703 -177581644 - L1MC/D LINE L1 -1300 4846 4590 1022 209 0 0 chr4 24746764 24746955 -177581392 - AluJb SINE Alu -1 311 121 2135 122 76 15 chr4 24747684 24748027 -177580320 + THE1B LTR MaLR 1 364 0 412 299 63 29 chr4 24749016 24749223 -177579124 - L2 LINE L2 -1 3312 3099 271 301 130 0 chr4 24749412 24749535 -177578812 - MIR SINE MIR -93 169 31 199 219 0 122 chr4 24751330 24751412 -177576935 - MIR SINE MIR -11 251 180 277 325 195 13 chr4 24751554 24751708 -177576639 + MIR3 SINE MIR 4 185 -23 1875 99 0 0 chr4 24752644 24752887 -177575460 + AluSc SINE Alu 4 246 -63 258 309 14 58 chr4 24754324 24754463 -177573884 + L2 LINE L2 3135 3267 -46 40 21 0 0 chr4 24754594 24754641 -177573706 + AT_rich Low_complexity Low_complexity 1 47 0 1073 194 5 0 chr4 24754641 24754847 -177573500 - L1PA16 LINE L1 -9 6157 5951 231 292 14 14 chr4 24755527 24755599 -177572748 - MIR SINE MIR -123 139 68 1707 120 25 15 chr4 24755973 24756247 -177572100 + AluSx SINE Alu 27 303 -9 308 238 48 38 chr4 24756529 24756634 -177571713 - MIR SINE MIR -47 215 110 499 301 23 10 chr4 24757385 24757564 -177570783 - MIR3 SINE MIR -32 176 3 416 265 14 126 chr4 24757580 24757803 -177570544 - L2 LINE L2 0 3272 3075 1306 204 37 79 chr4 24758025 24758432 -177569915 + MLT1B LTR MaLR 1 390 0 216 271 12 47 chr4 24759083 24759168 -177569179 + MIR SINE MIR 47 128 -80 263 395 25 62 chr4 24760541 24760817 -177567530 - L2 LINE L2 -16 3256 2991 198 297 55 22 chr4 24760974 24761065 -177567282 - L3 LINE CR1 -337 1240 1147 391 314 19 44 chr4 24761638 24761797 -177566550 - L2 LINE L2 -8 3264 3110 245 324 54 14 chr4 24761964 24762038 -177566309 + MIR SINE MIR 50 126 -136 2206 97 86 17 chr4 24763315 24763665 -177564682 - THE1C LTR MaLR 0 375 2 3214 106 4 9 chr4 24763666 24764119 -177564228 - THE1C-int LTR MaLR 0 1580 1130 1325 148 37 25 chr4 24764222 24764465 -177563882 - THE1C LTR MaLR -129 246 1 349 313 41 34 chr4 24764842 24764989 -177563358 + MIR3 SINE MIR 54 201 -7 546 210 22 43 chr4 24765888 24766026 -177562321 + MER33 DNA MER1_type 1 135 -189 700 217 190 0 chr4 24766077 24766298 -177562049 - L2 LINE L2 -692 2622 2360 241 289 26 13 chr4 24766283 24766359 -177561988 - MIR SINE MIR -75 133 57 * 432 310 35 0 chr4 24766362 24766478 -177561869 - MIR3 SINE MIR -24 184 65 261 0 0 0 chr4 24766534 24766563 -177561784 + (T)n Simple_repeat Simple_repeat 1 29 0 217 146 83 0 chr4 24766890 24766938 -177561409 - L2 LINE L2 -813 2501 2450 279 397 35 0 chr4 24767063 24767179 -177561168 - MIR3 SINE MIR -24 184 65 261 0 0 0 chr4 24767236 24767265 -177561082 + (T)n Simple_repeat Simple_repeat 1 29 0 775 304 90 67 chr4 24768024 24768692 -177559655 + MER21B LTR ERV1 24 706 -157 264 107 0 126 chr4 24768732 24768835 -177559512 + (TTTTA)n Simple_repeat Simple_repeat 3 92 0 2531 154 4 41 chr4 24769107 24769569 -177558778 - Tigger2 DNA MER2_type -1 2717 2273 392 192 0 41 chr4 24769557 24769630 -177558717 + MER8 DNA MER2_type 170 239 0 * 363 306 131 0 chr4 24769993 24770153 -177558194 + MIR SINE MIR 67 247 -15 427 247 115 75 chr4 24770153 24770327 -177558020 - MIR SINE MIR -76 186 6 401 315 64 41 chr4 24770908 24771127 -177557220 + MARNA DNA Mariner 15 238 -348 267 103 0 0 chr4 24771342 24771381 -177556966 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2226 92 0 0 chr4 24771385 24771667 -177556680 - AluSx SINE Alu -30 282 1 2293 105 0 0 chr4 24772267 24772571 -177555776 - AluSq SINE Alu -9 304 1 352 302 93 22 chr4 24773569 24773708 -177554639 - L2 LINE L2 -206 3066 2918 348 321 29 143 chr4 24774417 24774831 -177553516 - L2 LINE L2 0 3272 2906 596 340 44 10 chr4 24775225 24775428 -177552919 + MIR SINE MIR 46 255 -7 966 100 0 0 chr4 24776768 24776908 -177551439 + (TTTC)n Simple_repeat Simple_repeat 2 141 0 7086 62 5 0 chr4 24776910 24778024 -177550323 - L1PA7 LINE L1 -8 6146 5031 216 307 39 39 chr4 24778036 24778163 -177550184 + MIR3 SINE MIR 54 180 -28 257 324 0 0 chr4 24778584 24778652 -177549695 + L2 LINE L2 3205 3272 0 270 338 106 25 chr4 24779262 24779460 -177548887 - MIR SINE MIR -48 214 1 263 298 130 8 chr4 24779666 24779797 -177548550 - L2 LINE L2 0 3313 3167 263 226 107 0 chr4 24780782 24780866 -177547481 - MER5A DNA MER1_type -85 104 12 500 224 43 149 chr4 24781821 24782076 -177546271 + MIR SINE MIR 15 242 -20 810 233 28 19 chr4 24782111 24782326 -177546021 - MIR SINE MIR -45 217 1 183 80 0 0 chr4 24782339 24782364 -177545983 + (CTA)n Simple_repeat Simple_repeat 3 27 0 272 290 30 20 chr4 24782364 24782464 -177545883 - MIR SINE MIR -161 101 1 216 67 0 0 chr4 24782837 24782867 -177545480 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 745 311 57 4 chr4 24784504 24784752 -177543595 + L2 LINE L2 2600 2860 -454 675 263 104 43 chr4 24784763 24785090 -177543257 + L2 LINE L2 2966 3312 -1 13257 237 37 22 chr4 24785171 24790110 -177538237 - L1MA4A LINE L1 -4 7001 2013 1278 195 27 16 chr4 24790113 24790369 -177537978 - L1MA4A LINE L1 -6587 262 4 259 371 101 45 chr4 24790535 24791241 -177537106 - L2 LINE L2 -337 2977 2233 7522 240 76 31 chr4 24791258 24797796 -177530551 + L1PBa LINE L1 3 5995 -867 234 105 0 0 chr4 24797797 24797835 -177530512 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 281 0 0 0 chr4 24797878 24797911 -177530436 + L1PB2 LINE L1 5867 5899 -252 689 270 40 26 chr4 24798267 24798493 -177529854 - MLT1H1 LTR MaLR 0 555 327 186 172 0 47 chr4 24798511 24798575 -177529772 + CT-rich Low_complexity Low_complexity 2 62 0 251 221 128 35 chr4 24798652 24798738 -177529609 - MLT1H1 LTR MaLR -375 174 81 269 298 46 46 chr4 24800485 24800616 -177527731 - L3 LINE CR1 -127 1450 1320 229 376 43 6 chr4 24800635 24800797 -177527550 + MIR SINE MIR 21 188 -74 383 373 55 7 chr4 24801186 24801457 -177526890 + L2 LINE L2 2352 2635 -679 306 0 0 0 chr4 24802732 24802766 -177525581 + (TG)n Simple_repeat Simple_repeat 1 34 0 380 167 0 15 chr4 24803083 24803149 -177525198 + MER105 DNA DNA 139 203 -1 295 413 32 0 chr4 24803443 24803598 -177524749 - L3 LINE CR1 -19 1558 1399 345 339 25 62 chr4 24803893 24804135 -177524212 - HERVL68 LTR ERVL -345 2692 2460 2213 119 0 0 chr4 24854498 24854793 -177473554 + AluSq SINE Alu 9 303 -10 197 365 21 10 chr4 24855046 24855142 -177473205 + MIR SINE MIR 32 128 -134 22 0 0 0 chr4 24855474 24855496 -177472851 + AT_rich Low_complexity Low_complexity 1 22 0 4704 122 42 6 chr4 24855853 24856654 -177471693 + L1PA13 LINE L1 5329 6161 -2 485 173 0 0 chr4 24857178 24857253 -177471094 - 5S rRNA rRNA -29 92 18 3928 110 13 41 chr4 24857253 24858285 -177470062 + L1PA7 LINE L1 5076 6072 -82 393 355 18 12 chr4 24858895 24859061 -177469286 - MIR SINE MIR -94 168 2 505 142 53 13 chr4 24859748 24859857 -177468490 - MLT1A2 LTR MaLR -254 111 1 23 33 0 0 chr4 24862517 24862547 -177465800 + AT_rich Low_complexity Low_complexity 1 30 0 2215 66 0 0 chr4 24863005 24863276 -177465071 - AluY SINE Alu -37 274 4 1323 98 0 0 chr4 24864532 24864751 -177463596 + AluY SINE Alu 127 311 0 424 236 50 18 chr4 24865368 24865564 -177462783 + THE1B LTR MaLR 150 348 -16 23 0 0 0 chr4 24866235 24866258 -177462089 + AT_rich Low_complexity Low_complexity 1 23 0 707 272 88 20 chr4 24866375 24866997 -177461350 - L1 LINE L1 -1177 4969 4297 329 333 161 29 chr4 24867182 24867804 -177460543 - L1 LINE L1 -3267 2879 2176 1997 236 71 12 chr4 24868341 24869181 -177459166 + L1MCb LINE L1 649 1543 -4851 5552 101 6 28 chr4 24870160 24871593 -177456754 - L1PA7 LINE L1 -201 5953 4562 206 304 14 0 chr4 24873364 24873433 -177454914 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 257 143 20 20 chr4 24874791 24874840 -177453507 - MLT2B2 LTR ERVL -466 49 1 8020 120 8 10 chr4 24874840 24876045 -177452302 - HERVL-B2 LTR ERVL 0 5654 4452 346 250 13 0 chr4 24876748 24876824 -177451523 - MLT1D LTR MaLR -428 77 1 2213 99 3 3 chr4 24876901 24877195 -177451152 + AluSx SINE Alu 1 294 -18 253 306 50 58 chr4 24878224 24878466 -177449881 + L2 LINE L2 2380 2619 -695 539 250 130 76 chr4 24878476 24878900 -177449447 - MLT1G3 LTR MaLR -26 523 75 647 330 64 29 chr4 24878952 24879297 -177449050 + L2 LINE L2 2617 2973 -341 566 189 14 81 chr4 24880029 24880177 -177448170 + MLT2A2 LTR ERVL 269 406 -47 715 303 149 20 chr4 24880293 24880735 -177447612 - LTR33 LTR ERVL -7 514 16 1693 149 64 10 chr4 24880877 24881172 -177447175 + AluSx SINE Alu 1 311 -1 1149 164 28 35 chr4 24881993 24882280 -177446067 - L1MA3 LINE L1 -30 6275 5991 864 156 0 7 chr4 24882270 24882424 -177445923 + L1MA3 LINE L1 5836 5988 -317 * 447 309 96 50 chr4 24882629 24883069 -177445278 - MER90 LTR ERV1 -38 576 78 936 209 105 14 chr4 24883652 24883862 -177444485 + MLT1D LTR MaLR 259 487 -18 180 179 0 0 chr4 24883900 24883939 -177444408 + (CA)n Simple_repeat Simple_repeat 2 40 0 245 329 132 20 chr4 24884830 24884982 -177443365 + MLT1J2 LTR MaLR 270 438 -12 1921 182 50 40 chr4 24885721 24886200 -177442147 + LTR2B LTR ERV1 7 490 0 2519 221 32 30 chr4 24886533 24886584 -177441763 + L1MCa LINE L1 922 971 -5455 2216 91 3 14 chr4 24886584 24886881 -177441466 + AluY SINE Alu 1 294 -17 2519 221 32 30 chr4 24886881 24887826 -177440521 + L1MCa LINE L1 971 2009 -4417 372 298 15 54 chr4 24887972 24888244 -177440103 - AluSg/x SINE Alu -29 273 92 1552 167 15 4 chr4 24888456 24888726 -177439621 - MSTA LTR MaLR -152 276 4 3087 173 39 37 chr4 24888822 24889521 -177438826 - L1MC1 LINE L1 0 6333 5634 451 314 74 54 chr4 24890712 24890954 -177437393 - MIR SINE MIR -14 248 2 2133 231 58 82 chr4 24892270 24892605 -177435742 + L1MDa LINE L1 1721 2062 -4659 4910 95 24 7 chr4 24892605 24893321 -177435026 + L1PA8 LINE L1 5441 6168 -4 2133 231 58 82 chr4 24893321 24894073 -177434274 + L1MDa LINE L1 2062 2806 -3915 246 373 73 0 chr4 24894274 24894384 -177433963 - L2 LINE L2 0 3272 3155 1846 124 118 24 chr4 24894500 24894831 -177433516 - THE1B LTR MaLR -2 362 1 284 299 81 0 chr4 24895406 24895493 -177432854 + MIR SINE MIR 55 148 -60 10077 115 15 2 chr4 24895857 24897429 -177430918 - L1P LINE L1 -2676 3470 1878 5632 131 3 3 chr4 24897568 24898651 -177429696 - L1PA14 LINE L1 -11 6150 5069 299 127 0 18 chr4 24899291 24899346 -177429001 - MLT2A1 LTR ERVL -1 443 390 329 197 13 0 chr4 24899346 24899422 -177428925 + (TA)n Simple_repeat Simple_repeat 2 78 0 335 212 92 115 chr4 24900219 24900436 -177427911 - MIR SINE MIR -4 258 47 10809 107 9 32 chr4 24900459 24902207 -177426140 + L1P3 LINE L1 1 1708 -4753 232 250 88 0 chr4 24902985 24903065 -177425282 - MLT1K LTR MaLR -131 457 371 1833 129 7 11 chr4 24903126 24903432 -177424915 - AluSq SINE Alu 0 338 34 417 290 83 7 chr4 24903678 24903823 -177424524 - MIR SINE MIR -10 252 97 894 287 26 20 chr4 24904107 24904563 -177423784 - L1MCa LINE L1 -2598 3828 3370 25 102 0 0 chr4 24904593 24904681 -177423666 + AT_rich Low_complexity Low_complexity 1 88 0 1725 244 72 58 chr4 24904747 24905838 -177422509 - L1MCa LINE L1 -3153 3273 2163 1887 138 42 0 chr4 24905838 24906127 -177422220 + AluSx SINE Alu 1 301 -11 1725 244 72 58 chr4 24906127 24906236 -177422111 - L1MCa LINE L1 -4263 2163 2057 250 348 57 28 chr4 24906721 24906862 -177421485 - MIR SINE MIR -111 151 7 26 30 0 0 chr4 24907056 24907089 -177421258 + AT_rich Low_complexity Low_complexity 1 33 0 236 345 198 0 chr4 24907315 24907431 -177420916 - L2 LINE L2 0 3272 3134 334 327 43 46 chr4 24907488 24907718 -177420629 - L2 LINE L2 -242 3030 2803 23 0 0 0 chr4 24909274 24909297 -177419050 + AT_rich Low_complexity Low_complexity 1 23 0 1440 106 4 21 chr4 24910068 24910304 -177418043 + L1PA10 LINE L1 5937 6168 0 207 0 0 0 chr4 24911161 24911184 -177417163 + (T)n Simple_repeat Simple_repeat 1 23 0 1824 136 41 7 chr4 24911216 24911511 -177416836 - AluSx SINE Alu -7 305 1 24 0 0 0 chr4 24912503 24912527 -177415820 + AT_rich Low_complexity Low_complexity 1 24 0 491 312 64 12 chr4 24913316 24913534 -177414813 + MIR SINE MIR 4 230 -32 206 303 15 15 chr4 24914661 24914727 -177413620 - L2 LINE L2 -38 3234 3169 2212 128 0 0 chr4 24914945 24915250 -177413097 - AluSx SINE Alu -7 305 1 285 241 51 13 chr4 24915381 24915460 -177412887 - L2 LINE L2 0 3313 3232 22 0 0 0 chr4 24916609 24916631 -177411716 + AT_rich Low_complexity Low_complexity 1 22 0 2078 133 0 0 chr4 24916631 24916924 -177411423 - AluJb SINE Alu -19 293 1 724 298 67 39 chr4 24917079 24917391 -177410956 - MLT1J1 LTR MaLR -100 346 26 2334 77 0 32 chr4 24918541 24918852 -177409495 - AluY SINE Alu -10 301 1 204 40 0 0 chr4 24919638 24919663 -177408684 + (GA)n Simple_repeat Simple_repeat 2 26 0 8672 162 38 10 chr4 24919946 24921484 -177406863 + Tigger1 DNA MER2_type 1 1581 -837 1673 213 5 11 chr4 24921497 24921864 -177406483 + L1PA16 LINE L1 5794 6158 -8 1006 128 94 15 chr4 24921874 24922077 -177406270 + L1P5 LINE L1 5571 5789 -367 260 284 0 0 chr4 24922079 24922167 -177406180 - L1MC4 LINE L1 -1340 6702 6615 300 233 0 0 chr4 24922168 24922241 -177406106 + (TA)n Simple_repeat Simple_repeat 1 73 0 1848 169 56 3 chr4 24922254 24922591 -177405756 + L1PB4 LINE L1 5789 6143 -13 3567 142 51 25 chr4 24922601 24923328 -177405019 + Tigger1 DNA MER2_type 1577 2418 0 276 333 83 14 chr4 24924144 24924288 -177404059 + MIR SINE MIR 30 183 -79 719 207 110 6 chr4 24924779 24924943 -177403404 + MSTC LTR MaLR 197 377 -51 369 220 11 11 chr4 24925074 24925165 -177403182 + MLT1K LTR MaLR 494 584 -4 24 0 0 0 chr4 24925246 24925270 -177403077 + AT_rich Low_complexity Low_complexity 1 24 0 496 331 54 19 chr4 24925497 24925868 -177402479 - L1ME LINE L1 -375 5795 5412 2099 100 23 0 chr4 24925934 24926234 -177402113 - AluSc SINE Alu 0 309 3 13606 151 78 33 chr4 24926448 24929050 -177399297 - Tigger2 DNA MER2_type 0 2718 1 455 391 46 24 chr4 24929078 24929668 -177398679 - L1MEd LINE L1 -5422 697 95 24 32 0 0 chr4 24931119 24931150 -177397197 + AT_rich Low_complexity Low_complexity 1 31 0 385 288 17 17 chr4 24931721 24931839 -177396508 + L2 LINE L2 3196 3313 0 1517 225 35 41 chr4 24932798 24933088 -177395259 - MLT1C LTR MaLR 0 467 180 2505 64 0 0 chr4 24933088 24933385 -177394962 - AluY SINE Alu -14 297 1 1517 225 35 41 chr4 24933385 24933556 -177394791 - MLT1C LTR MaLR -287 180 9 532 271 208 19 chr4 24933571 24933778 -177394569 - MIR SINE MIR -10 252 7 311 353 126 26 chr4 24934088 24934539 -177393808 + L2 LINE L2 2669 3167 -146 469 231 41 8 chr4 24935092 24935213 -177393134 + LTR33 LTR ERVL 397 521 0 1151 251 70 106 chr4 24935278 24935920 -177392427 - L2 LINE L2 -18 3295 2692 242 54 0 27 chr4 24935920 24935957 -177392390 + (TG)n Simple_repeat Simple_repeat 2 37 0 1151 251 70 106 chr4 24935957 24936147 -177392200 - L2 LINE L2 -621 2692 2497 1022 291 55 82 chr4 24936144 24936841 -177391506 - L2 LINE L2 0 3313 2640 * 266 224 26 95 chr4 24936919 24937035 -177391312 - L2 LINE L2 -885 2429 2322 200 281 34 67 chr4 24938505 24938594 -177389753 - L2 LINE L2 -6 3307 3222 484 199 8 8 chr4 24938604 24938735 -177389612 + GA-rich Low_complexity Low_complexity 2 132 0 1394 245 30 0 chr4 24939222 24939553 -177388794 - MLT1C LTR MaLR -124 343 3 1338 124 0 0 chr4 24939579 24939756 -177388591 + AluSq SINE Alu 1 177 -136 1117 137 0 16 chr4 24939876 24940058 -177388289 - AluSg/x SINE Alu -5 307 129 1950 252 62 96 chr4 24940179 24940469 -177387878 - L1MCb LINE L1 -5115 930 632 381 175 0 0 chr4 24940469 24940532 -177387815 + AluJ/FRAM SINE Alu 230 292 -10 1950 252 62 96 chr4 24940532 24941130 -177387217 - L1MCb LINE L1 -5413 632 12 415 277 36 0 chr4 24941159 24941296 -177387051 - L1MCa LINE L1 -4765 1661 1520 1123 261 75 21 chr4 24942617 24943037 -177385310 - MSTB2 LTR MaLR 0 457 1 4479 138 71 33 chr4 24943125 24944071 -177384276 + MER52C LTR ERV1 1 1277 -1 411 237 126 11 chr4 24944072 24944262 -177384085 + MER113 DNA MER1_type? 18 229 -292 283 132 113 0 chr4 24944336 24944389 -177383958 + MER113 DNA MER1_type? 348 406 -115 327 402 43 11 chr4 24945048 24945416 -177382931 - L3 LINE CR1 -275 1302 923 234 247 11 101 chr4 24945417 24945506 -177382841 - L3 LINE CR1 -609 968 888 34 0 0 0 chr4 24945510 24945544 -177382803 + AT_rich Low_complexity Low_complexity 1 34 0 677 321 47 0 chr4 24945579 24945791 -177382556 + MIR SINE MIR 41 262 0 837 98 0 0 chr4 24947134 24947277 -177381070 + (TA)n Simple_repeat Simple_repeat 2 144 0 209 287 11 10 chr4 24948262 24948460 -177379887 + (TA)n Simple_repeat Simple_repeat 1 198 0 224 242 30 0 chr4 24948386 24948452 -177379895 + (TATG)n Simple_repeat Simple_repeat 1 68 0 213 279 0 13 chr4 24948964 24949043 -177379304 - MIR SINE MIR -120 142 65 1927 107 73 3 chr4 24949045 24949334 -177379013 - AluSg SINE Alu 0 310 2 21 0 0 0 chr4 24949728 24949749 -177378598 + AT_rich Low_complexity Low_complexity 1 21 0 2241 112 3 0 chr4 24950857 24951161 -177377186 + AluSx SINE Alu 1 305 -7 230 289 170 15 chr4 24951182 24951317 -177377030 - L3 LINE CR1 -106 1471 1316 190 108 27 27 chr4 24951436 24951473 -177376874 - MIR SINE MIR -64 144 108 5621 109 19 1 chr4 24951604 24952994 -177375353 - L1PA13 LINE L1 -19 6144 4723 2911 210 25 30 chr4 24952999 24953761 -177374586 - L1PA13 LINE L1 -2210 3936 3179 * 5829 162 14 17 chr4 24953756 24955530 -177372817 - L1PB1 LINE L1 0 6151 4374 186 43 0 0 chr4 24955530 24955553 -177372794 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2006 133 0 0 chr4 24955554 24955833 -177372514 - AluSx SINE Alu -32 280 2 5829 162 14 17 chr4 24955833 24956183 -177372164 - L1PB1 LINE L1 -1776 4375 4033 1479 114 0 5 chr4 24956375 24956699 -177371648 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr4 24958298 24958321 -177370026 + AT_rich Low_complexity Low_complexity 1 23 0 236 218 248 20 chr4 24958855 24958956 -177369391 + MER5C DNA MER1_type 1 124 -200 387 336 0 8 chr4 24959225 24959350 -177368997 + L2 LINE L2 3190 3313 0 1674 183 3 3 chr4 24959851 24960141 -177368206 - AluJb SINE Alu -22 290 1 252 0 0 0 chr4 24960152 24960180 -177368167 + (T)n Simple_repeat Simple_repeat 1 28 0 286 296 56 0 chr4 24960181 24960252 -177368095 - MIR SINE MIR -63 145 71 2212 146 24 11 chr4 24960306 24960676 -177367671 - THE1C LTR MaLR 0 375 1 213 132 0 0 chr4 24960974 24961012 -177367335 + (CAA)n Simple_repeat Simple_repeat 2 39 0 800 202 71 15 chr4 24961284 24961482 -177366865 - MER3 DNA MER1_type 0 209 1 380 298 25 8 chr4 24961559 24961680 -177366667 - MER94 DNA DNA -11 123 1 213 291 12 12 chr4 24961742 24961828 -177366519 + MIR SINE MIR 94 179 -83 193 385 31 31 chr4 24961874 24961970 -177366377 + L2 LINE L2 3160 3255 -17 370 274 97 80 chr4 24964177 24964403 -177363944 + MIR SINE MIR 33 262 0 30 27 0 0 chr4 24964403 24964440 -177363907 + AT_rich Low_complexity Low_complexity 1 37 0 245 296 85 76 chr4 24965638 24965861 -177362486 - MIR SINE MIR -11 251 27 236 331 114 25 chr4 24967099 24967278 -177361069 - MIR SINE MIR -76 186 3 597 296 76 17 chr4 24968167 24968503 -177359844 + MLT2E LTR ERVL 215 618 -10 234 0 0 0 chr4 24968598 24968624 -177359723 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 274 329 24 52 chr4 24969994 24970204 -177358143 - L2 LINE L2 -243 3070 2867 500 312 13 19 chr4 24970979 24971136 -177357211 + MLT1H LTR MaLR 199 354 -195 326 313 24 53 chr4 24971409 24971617 -177356730 + L2 LINE L2 2867 3068 -245 191 188 21 0 chr4 24971684 24971732 -177356615 + (TA)n Simple_repeat Simple_repeat 1 49 0 204 40 0 0 chr4 24971806 24971831 -177356516 + (TG)n Simple_repeat Simple_repeat 2 26 0 296 294 94 0 chr4 24971887 24971972 -177356375 - MIR3 SINE MIR -15 193 101 386 340 79 17 chr4 24972305 24972681 -177355666 + MLT1J2 LTR MaLR 67 450 0 495 372 108 17 chr4 24972690 24972986 -177355361 + L2 LINE L2 2945 3267 -5 189 0 0 0 chr4 24973683 24973704 -177354643 + (A)n Simple_repeat Simple_repeat 1 21 0 304 192 13 26 chr4 24973749 24973827 -177354520 - MER116 DNA Mariner 0 80 4 209 323 21 52 chr4 24974018 24974114 -177354233 + L2 LINE L2 3179 3271 -1 181 351 61 23 chr4 24974659 24974790 -177353557 + MIR SINE MIR 53 188 -74 364 264 179 0 chr4 24975305 24975411 -177352936 - L2 LINE L2 0 3272 3148 1231 96 0 0 chr4 24975959 24976141 -177352206 - AluY SINE Alu 0 309 128 820 187 3 114 chr4 24976267 24976599 -177351748 - AluY SINE Alu -16 295 1 855 351 138 12 chr4 24979149 24979656 -177348691 - L3 LINE CR1 -1 1576 1006 1377 265 98 27 chr4 24979751 24980427 -177347920 - L1ME3 LINE L1 -8 6154 5431 499 275 15 0 chr4 24980725 24980856 -177347491 - MER94 DNA DNA 0 134 2 2019 279 22 29 chr4 24981186 24981767 -177346580 - MLT1E LTR MaLR -16 577 1 497 75 21 32 chr4 24981932 24982026 -177346321 + (TTTTC)n Simple_repeat Simple_repeat 3 95 0 267 191 0 0 chr4 24982021 24982084 -177346263 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 * 297 309 24 40 chr4 24982204 24982330 -177346017 + MIR SINE MIR 31 154 -108 330 391 6 19 chr4 24983140 24983301 -177345046 + MIR3 SINE MIR 43 201 -7 469 278 47 30 chr4 24984216 24984385 -177343962 - MIR3 SINE MIR -33 175 4 185 293 0 0 chr4 24984995 24985036 -177343311 + L3 LINE CR1 1516 1556 -21 23 33 0 0 chr4 24985755 24985785 -177342562 + AT_rich Low_complexity Low_complexity 1 30 0 285 304 84 51 chr4 24986040 24986454 -177341893 + L1ME4a LINE L1 5617 6044 -77 245 313 164 37 chr4 24988335 24988469 -177339878 - MIR3 SINE MIR -39 169 19 284 360 79 28 chr4 24989534 24989649 -177338698 - MIR SINE MIR -36 226 118 2719 102 0 0 chr4 24989649 24990012 -177338335 + THE1B LTR MaLR 2 364 0 284 360 79 28 chr4 24990012 24990110 -177338237 - MIR SINE MIR -144 118 2 971 201 0 0 chr4 24990463 24990657 -177337690 + AluJb SINE Alu 131 324 0 2040 130 0 7 chr4 24991005 24991304 -177337043 - AluSx SINE Alu -7 305 9 186 43 0 0 chr4 24991314 24991337 -177337010 + (T)n Simple_repeat Simple_repeat 1 23 0 592 242 106 19 chr4 24991337 24991498 -177336849 - FAM SINE Alu 0 175 1 251 336 14 55 chr4 24991933 24992079 -177336268 - MIR3 SINE MIR -64 144 5 385 250 0 0 chr4 24992140 24992228 -177336119 + MER94 DNA DNA 2 89 -45 468 288 103 44 chr4 24993555 24994000 -177334347 + MLT1H LTR MaLR 10 519 -30 1913 183 144 79 chr4 24994056 24994179 -177334168 + MLT1E1 LTR MaLR 10 124 -530 1896 137 3 26 chr4 24994179 24994485 -177333862 + AluSx SINE Alu 1 299 -13 1913 183 144 79 chr4 24994485 24994967 -177333380 + MLT1E1 LTR MaLR 124 654 0 258 268 181 31 chr4 24996286 24996413 -177331934 - MLT1J LTR MaLR -73 438 293 999 230 60 60 chr4 24996555 24996920 -177331427 + MLT1A1 LTR MaLR 1 365 0 241 320 52 0 chr4 24997038 24997135 -177331212 - L2 LINE L2 -3 3310 3209 360 283 0 0 chr4 24997229 24997328 -177331019 - MIR SINE MIR -18 244 146 1929 139 6 22 chr4 24997388 24997705 -177330642 - AluJb SINE Alu 0 312 1 551 243 110 17 chr4 24998116 24998289 -177330058 - MER5A DNA MER1_type 0 189 1 4364 208 69 5 chr4 24998366 24998684 -177329663 + Tigger6a DNA MER2_type 1 297 -1300 1490 235 19 22 chr4 24998684 24999050 -177329297 - MLT1A1 LTR MaLR 0 365 1 4364 208 69 5 chr4 24999050 24999749 -177328598 + Tigger6a DNA MER2_type 297 1083 0 2113 107 10 3 chr4 24999850 25000149 -177328198 - AluSc SINE Alu -8 301 1 2278 142 37 55 chr4 25000189 25000625 -177327722 - Tigger2a DNA MER2_type -6 428 1 1522 223 56 28 chr4 25000787 25001177 -177327170 - MLT1C LTR MaLR 0 467 67 181 219 123 0 chr4 25001240 25001313 -177327034 + MIR SINE MIR 105 186 -76 21 0 0 0 chr4 25001387 25001408 -177326939 + AT_rich Low_complexity Low_complexity 1 21 0 665 165 15 60 chr4 25002030 25002163 -177326184 + FLAM_A SINE Alu 1 127 -6 184 29 29 29 chr4 25002168 25002202 -177326145 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 2105 305 136 37 chr4 25002203 25003759 -177324588 + L1M4 LINE L1 2274 3983 -2163 5609 180 26 17 chr4 25003763 25005208 -177323139 - L1MA10 LINE L1 -1 6333 4871 426 278 9 0 chr4 25005235 25005350 -177322997 - MER44D DNA MER2_type -1 604 489 213 227 45 0 chr4 25005350 25005416 -177322931 + (TA)n Simple_repeat Simple_repeat 1 69 0 1391 246 36 38 chr4 25005416 25005888 -177322459 - MER44D DNA MER2_type -79 526 1 1524 213 35 8 chr4 25005888 25006288 -177322059 - L1MA10 LINE L1 -1316 4830 4420 367 214 21 91 chr4 25006289 25006476 -177321871 + L1 LINE L1 3456 3629 -2517 25 75 0 0 chr4 25007085 25007138 -177321209 + AT_rich Low_complexity Low_complexity 1 53 0 2979 209 65 44 chr4 25007252 25008303 -177320044 - L1MB8 LINE L1 -111 6067 5008 254 171 184 13 chr4 25008275 25008351 -177319996 + L1M4 LINE L1 3004 3092 -3054 * 1065 84 0 0 chr4 25008472 25008603 -177319744 - AluSg SINE Alu -179 131 1 337 289 139 50 chr4 25009222 25009402 -177318945 + L2 LINE L2 3118 3313 0 287 291 78 10 chr4 25010043 25010146 -177318201 - MIR3 SINE MIR -49 159 50 231 146 0 0 chr4 25011222 25011263 -177317084 + (TG)n Simple_repeat Simple_repeat 1 41 0 236 273 20 0 chr4 25012160 25012259 -177316088 + (TTATA)n Simple_repeat Simple_repeat 5 105 0 31 26 0 0 chr4 25012964 25013002 -177315345 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr4 25013278 25013302 -177315045 + AT_rich Low_complexity Low_complexity 1 24 0 2328 8 0 0 chr4 25013541 25013806 -177314541 + L1PA2 LINE L1 5889 6153 -2 289 368 50 5 chr4 25014112 25014313 -177314034 + L2 LINE L2 516 725 -2589 232 318 119 40 chr4 25014494 25014645 -177313702 + MER5B DNA MER1_type 16 178 0 423 358 90 27 chr4 25014659 25015245 -177313102 + L2 LINE L2 976 1598 -1716 465 298 58 24 chr4 25015279 25015484 -177312863 + MIR SINE MIR 38 249 -13 929 362 26 22 chr4 25015551 25016087 -177312260 + L2 LINE L2 1720 2257 -1057 232 308 26 83 chr4 25016097 25016253 -177312094 + MIR SINE MIR 7 153 -109 236 349 102 18 chr4 25016343 25016509 -177311838 + L2 LINE L2 2239 2418 -896 21 0 0 0 chr4 25016596 25016617 -177311730 + AT_rich Low_complexity Low_complexity 1 21 0 52 17 0 0 chr4 25016675 25016734 -177311613 + AT_rich Low_complexity Low_complexity 1 59 0 635 333 37 9 chr4 25016987 25017555 -177310792 - L1MEd LINE L1 -3345 3037 2454 23 0 0 0 chr4 25017607 25017630 -177310717 + AT_rich Low_complexity Low_complexity 1 23 0 314 326 81 0 chr4 25017950 25018122 -177310225 - L1MEd LINE L1 -4649 1735 1550 26 30 0 0 chr4 25018172 25018205 -177310142 + AT_rich Low_complexity Low_complexity 1 33 0 291 351 51 20 chr4 25018305 25018528 -177309819 + MIR SINE MIR 18 253 -9 569 320 56 2 chr4 25018683 25019103 -177309244 - L1MEd LINE L1 -4862 1510 1159 211 294 0 0 chr4 25019596 25019664 -177308683 + (TA)n Simple_repeat Simple_repeat 2 69 0 325 381 66 45 chr4 25019691 25020132 -177308215 + L2 LINE L2 2528 2977 -337 363 366 34 75 chr4 25020192 25020460 -177307887 + L2 LINE L2 2997 3253 -19 195 100 0 0 chr4 25021523 25021553 -177306794 + (T)n Simple_repeat Simple_repeat 1 30 0 22 35 0 0 chr4 25021822 25021851 -177306496 + AT_rich Low_complexity Low_complexity 1 29 0 481 329 46 32 chr4 25023439 25023655 -177304692 + MIR SINE MIR 44 262 0 309 327 27 9 chr4 25023639 25023749 -177304598 - MIR SINE MIR -99 163 52 * 21 36 0 0 chr4 25023782 25023810 -177304537 + AT_rich Low_complexity Low_complexity 1 28 0 2575 80 24 104 chr4 25023824 25024274 -177304073 + L1PA11 LINE L1 5757 6170 -4 24 32 0 0 chr4 25024282 25024313 -177304034 + AT_rich Low_complexity Low_complexity 1 31 0 1707 284 108 59 chr4 25024339 25025019 -177303328 - HAL1 LINE L1 -130 2377 1732 2409 149 23 30 chr4 25025019 25025455 -177302892 + Tigger2a DNA MER2_type 2 434 0 1707 284 108 59 chr4 25025455 25025539 -177302808 - HAL1 LINE L1 -775 1732 1654 1641 111 0 4 chr4 25025539 25025765 -177302582 + AluSq SINE Alu 86 310 -3 1707 284 108 59 chr4 25025765 25026517 -177301830 - HAL1 LINE L1 -853 1654 786 264 291 243 32 chr4 25026740 25027049 -177301298 - HAL1 LINE L1 -1896 611 238 321 238 25 25 chr4 25027160 25027240 -177301107 + MLT1G1 LTR MaLR 1 80 -515 1061 285 126 28 chr4 25027297 25027764 -177300583 + MLT1G1 LTR MaLR 83 595 0 357 198 25 12 chr4 25027782 25027863 -177300484 + HsTC2 DNA Tc2 1805 1886 -12 307 273 149 39 chr4 25027899 25028053 -177300294 - HAL1 LINE L1 -2328 179 9 342 0 0 0 chr4 25028127 25028165 -177300182 + (TG)n Simple_repeat Simple_repeat 2 39 0 1991 88 49 14 chr4 25028876 25029160 -177299187 + AluY SINE Alu 18 311 0 285 289 0 35 chr4 25029271 25029385 -177298962 + LTR67 LTR ERVL 445 554 -3 375 182 0 0 chr4 25030453 25030530 -177297817 + CT-rich Low_complexity Low_complexity 2 78 0 372 296 50 77 chr4 25032306 25032589 -177295758 - MIR SINE MIR 0 262 2 321 331 31 15 chr4 25033423 25033553 -177294794 - MIR3 SINE MIR -16 192 61 1937 246 74 33 chr4 25033734 25034345 -177294002 + MER92B LTR ERV1 1 636 0 458 322 25 25 chr4 25034426 25034628 -177293719 + MIR SINE MIR 49 250 -12 235 280 72 40 chr4 25034652 25034777 -177293570 - MIR SINE MIR -34 228 100 342 115 0 0 chr4 25035671 25035723 -177292624 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 313 379 129 23 chr4 25036303 25036612 -177291735 + L2 LINE L2 2896 3237 -35 187 304 36 0 chr4 25036702 25036758 -177291589 + L2 LINE L2 2240 2297 -1017 220 344 43 43 chr4 25037067 25037160 -177291187 + L2 LINE L2 3106 3198 -74 273 302 123 0 chr4 25037363 25037469 -177290878 + MIR SINE MIR 138 256 -6 207 0 0 0 chr4 25038146 25038169 -177290178 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 282 306 22 15 chr4 25039235 25039369 -177288978 - MARNA DNA Mariner -305 281 147 226 135 19 58 chr4 25039330 25039382 -177288965 + MARNA DNA Mariner 399 448 -138 * 524 272 69 16 chr4 25039419 25039665 -177288682 + MIR SINE MIR 3 261 -1 305 252 65 9 chr4 25039732 25039839 -177288508 - MIR SINE MIR -73 189 77 359 322 63 21 chr4 25041812 25041955 -177286392 - MIR3 SINE MIR -28 180 32 289 384 0 27 chr4 25042267 25042413 -177285934 + MER117 DNA MER1_type 4 145 -52 249 83 0 0 chr4 25042687 25042723 -177285624 + (TG)n Simple_repeat Simple_repeat 2 37 0 222 303 71 20 chr4 25043700 25043799 -177284548 - L2 LINE L2 -8 3305 3202 324 190 16 99 chr4 25044312 25044344 -177284003 - L1ME4a LINE L1 -43 6078 6045 959 198 90 100 chr4 25044344 25044744 -177283603 + MSTD LTR MaLR 1 396 0 324 190 16 99 chr4 25044744 25044832 -177283515 - L1ME4a LINE L1 -76 6045 5968 306 147 29 29 chr4 25045490 25045558 -177282789 - MIR SINE MIR -138 124 57 467 280 47 66 chr4 25045656 25045867 -177282480 + L2 LINE L2 3107 3313 0 7211 223 65 31 chr4 25045939 25048825 -177279522 + L1MC1 LINE L1 18 3149 -3277 5517 207 30 40 chr4 25048832 25051108 -177277239 + L1MC1 LINE L1 4341 6613 0 785 347 70 37 chr4 25052955 25053645 -177274702 - L2 LINE L2 -85 3228 2508 21 0 0 0 chr4 25053873 25053894 -177274453 + AT_rich Low_complexity Low_complexity 1 21 0 350 260 97 19 chr4 25053910 25054064 -177274283 + L1ME4a LINE L1 5835 6000 -121 21 36 0 0 chr4 25054072 25054100 -177274247 + AT_rich Low_complexity Low_complexity 1 28 0 367 298 35 40 chr4 25055378 25055607 -177272740 + MER115 DNA AcHobo 2 226 -467 600 283 50 66 chr4 25055907 25056105 -177272242 - MER63B DNA MER1_type 0 1062 16 453 183 135 0 chr4 25056119 25056223 -177272124 + MER115 DNA AcHobo 568 685 -8 556 204 96 113 chr4 25056507 25056747 -177271600 - Charlie1 DNA MER1_type -2523 238 3 366 326 9 17 chr4 25057451 25057608 -177270739 - MER5A DNA MER1_type -22 156 12 1040 171 288 29 chr4 25057741 25058050 -177270297 + MLT1B LTR MaLR 2 390 0 216 245 19 0 chr4 25059312 25059365 -177268982 - MIR SINE MIR -108 154 101 298 242 30 0 chr4 25059471 25059537 -177268810 - MER81 DNA DNA 0 114 47 2179 100 10 0 chr4 25059657 25059946 -177268401 + AluSq SINE Alu 1 292 -21 548 262 55 14 chr4 25060307 25060452 -177267895 - MIR SINE MIR -110 152 2 2358 100 0 0 chr4 25060830 25061139 -177267208 + AluSc SINE Alu 1 309 0 280 281 11 22 chr4 25061191 25061280 -177267067 + L1M3de LINE L1 928 1015 -5638 1536 297 106 0 chr4 25061312 25061736 -177266611 + L1M3de LINE L1 935 1403 -5250 516 223 154 43 chr4 25061814 25062002 -177266345 - MLT1J LTR MaLR -203 308 100 395 203 0 0 chr4 25062774 25062848 -177265499 - MLT1B LTR MaLR 0 390 317 1021 166 34 0 chr4 25062848 25063023 -177265324 - MLT1B LTR MaLR -209 181 1 1982 132 7 13 chr4 25063138 25063441 -177264906 - AluY SINE Alu -8 303 3 806 276 134 16 chr4 25064131 25064497 -177263850 - MLT1I LTR MaLR 0 409 1 980 304 123 32 chr4 25064501 25065238 -177263109 - L2 LINE L2 0 3313 2500 221 323 16 0 chr4 25065562 25065624 -177262723 - L2 LINE L2 0 3272 3210 2413 68 0 0 chr4 25065751 25066079 -177262268 + AluY SINE Alu 1 328 0 617 277 68 10 chr4 25066126 25066332 -177262015 + MER58A DNA MER1_type 7 224 0 965 230 42 5 chr4 25067494 25067707 -177260640 + MER58A DNA MER1_type 1 221 -3 261 250 15 0 chr4 25068872 25068940 -177259407 + (TATATG)n Simple_repeat Simple_repeat 5 73 0 7214 194 84 43 chr4 25069101 25070786 -177257561 + MER52A LTR ERV1 1 1755 0 218 274 62 62 chr4 25072561 25072674 -177255673 + L2 LINE L2 2766 2878 -436 274 233 33 0 chr4 25072703 25072763 -177255584 + L2 LINE L2 3243 3304 -9 181 333 53 18 chr4 25072804 25072918 -177255429 + MIR SINE MIR 105 222 -40 376 378 60 16 chr4 25073038 25073287 -177255060 - MIR SINE MIR 0 262 3 259 104 15 45 chr4 25073423 25073490 -177254857 + (TTTTTG)n Simple_repeat Simple_repeat 4 68 0 253 221 189 21 chr4 25073720 25073815 -177254532 - MIR SINE MIR -89 173 63 1104 164 68 0 chr4 25076259 25076479 -177251868 + MER96B DNA MER1_type? 1 235 -182 439 325 98 0 chr4 25076807 25076970 -177251377 + MIR SINE MIR 51 229 -33 277 386 39 13 chr4 25077487 25077640 -177250707 - L2 LINE L2 -9 3263 3107 207 292 0 0 chr4 25078965 25079013 -177249334 - MER5A DNA MER1_type -86 103 56 662 203 35 7 chr4 25079851 25079994 -177248353 + MER69 DNA AcHobo 1 147 -2379 261 320 16 49 chr4 25080049 25080171 -177248176 + MIR SINE MIR 29 146 -62 182 133 0 44 chr4 25081039 25081055 -177247292 + (GAAA)n Simple_repeat Simple_repeat 3 18 -27 3952 23 0 0 chr4 25081055 25081486 -177246861 + SVA Other Other 955 1385 -1 182 133 0 44 chr4 25081486 25081514 -177246833 + (GAAA)n Simple_repeat Simple_repeat 18 45 0 407 306 155 9 chr4 25081515 25081734 -177246613 - MIR SINE MIR -1 261 11 35 0 0 0 chr4 25081767 25081802 -177246545 + AT_rich Low_complexity Low_complexity 1 35 0 2182 110 0 49 chr4 25081825 25082153 -177246194 + AluSx SINE Alu 1 312 0 279 403 35 7 chr4 25082783 25082927 -177245420 - L2 LINE L2 0 3272 3125 276 323 108 38 chr4 25083080 25083266 -177245081 + MIR SINE MIR 21 219 -43 529 225 33 8 chr4 25083794 25083914 -177244433 - LTR67 LTR ERVL 0 557 435 2235 120 0 0 chr4 25084180 25084488 -177243859 + AluSx SINE Alu 1 308 -4 402 271 135 8 chr4 25084888 25085021 -177243326 - MER5A DNA MER1_type 0 189 40 244 291 142 24 chr4 25085516 25085643 -177242704 + MIR3 SINE MIR 66 207 -1 2121 102 7 7 chr4 25087055 25087339 -177241008 + AluSx SINE Alu 1 284 -28 201 39 0 0 chr4 25087344 25087370 -177240977 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 792 270 116 36 chr4 25087549 25088258 -177240089 - L1ME3A LINE L1 -229 5941 5165 500 283 41 47 chr4 25088628 25089137 -177239210 - L1ME3A LINE L1 -2896 3250 2745 288 267 77 9 chr4 25089210 25089431 -177238916 - L1ME3A LINE L1 -3693 2453 2218 1690 181 0 26 chr4 25089440 25089750 -177238597 - AluJo SINE Alu -10 302 1 206 256 0 51 chr4 25089855 25089972 -177238375 + T-rich Low_complexity Low_complexity 1 111 0 233 355 37 32 chr4 25090394 25090583 -177237764 - HAL1 LINE L1 -947 1560 1371 345 340 44 22 chr4 25091365 25091636 -177236711 - L1ME4a LINE L1 -156 5965 5689 420 278 24 32 chr4 25092060 25092186 -177236161 - MIR SINE MIR -117 145 21 196 125 0 42 chr4 25094424 25094472 -177233875 + (GAAAA)n Simple_repeat Simple_repeat 3 48 0 583 293 81 16 chr4 25099533 25099853 -177228494 - L2 LINE L2 -259 3054 2720 483 330 127 60 chr4 25100004 25100571 -177227776 - L2 LINE L2 -337 2977 2373 255 304 36 0 chr4 25100817 25100929 -177227418 + (TATATG)n Simple_repeat Simple_repeat 3 118 0 181 393 92 30 chr4 25101008 25101336 -177227011 - L2 LINE L2 -842 2472 2125 21592 165 34 17 chr4 25102908 25104582 -177223765 - L1 LINE L1 -1346 6219 4574 2005 125 0 13 chr4 25104582 25104886 -177223461 - AluSc SINE Alu -9 300 1 21592 165 34 17 chr4 25104886 25107213 -177221134 - L1 LINE L1 -2991 4574 2070 510 46 0 0 chr4 25107213 25107278 -177221069 + (TC)n Simple_repeat Simple_repeat 2 66 0 21592 165 34 17 chr4 25107278 25109373 -177218974 - L1 LINE L1 -5495 2070 12 38 61 0 0 chr4 25109382 25109448 -177218899 + AT_rich Low_complexity Low_complexity 1 66 0 423 296 156 45 chr4 25109555 25109978 -177218369 - L1M4 LINE L1 -1112 5034 4565 1274 186 63 39 chr4 25110524 25110809 -177217538 + AluJo SINE Alu 1 292 -20 603 281 86 17 chr4 25111249 25111772 -177216575 - L1MEc LINE L1 -3284 2845 2287 21 0 0 0 chr4 25111951 25111972 -177216375 + AT_rich Low_complexity Low_complexity 1 21 0 12612 227 40 14 chr4 25112028 25112440 -177215907 - L1PA16 LINE L1 -1 7603 7203 2278 164 48 14 chr4 25112440 25112854 -177215493 + MSTA LTR MaLR 1 428 0 12612 227 40 14 chr4 25112854 25115028 -177213319 - L1PA16 LINE L1 -401 7203 5087 201 74 0 0 chr4 25115028 25115055 -177213292 + (TTG)n Simple_repeat Simple_repeat 3 29 0 12612 227 40 14 chr4 25115055 25117691 -177210656 - L1PA16 LINE L1 -2517 5087 2214 2677 97 11 3 chr4 25117840 25118212 -177210135 - THE1C LTR MaLR 0 375 1 691 273 99 51 chr4 25118653 25119482 -177208865 - L1MEc LINE L1 -4655 1655 787 24 32 0 0 chr4 25119991 25120022 -177208325 + AT_rich Low_complexity Low_complexity 1 31 0 957 191 122 39 chr4 25120255 25120588 -177207759 - MER113 DNA MER1_type? -74 447 87 389 200 0 0 chr4 25120588 25120668 -177207679 + MER116 DNA Mariner 1 80 0 197 360 98 49 chr4 25123034 25123198 -177205149 + MIR3 SINE MIR 10 181 -27 241 351 20 7 chr4 25123611 25123762 -177204585 - L1M4 LINE L1 -556 5628 5476 242 309 0 22 chr4 25124377 25124513 -177203834 - L1M4 LINE L1 -972 5387 5255 257 281 25 99 chr4 25124710 25124831 -177203516 - MLT1H LTR MaLR -6 543 432 484 313 98 34 chr4 25124862 25125127 -177203220 - MLT1H LTR MaLR -198 351 70 225 28 0 0 chr4 25125127 25125163 -177203184 - L1PA2 LINE L1 0 6155 6120 12911 37 0 0 chr4 25125178 25127495 -177200852 - L1PA4 LINE L1 -11 6144 3820 981 229 130 33 chr4 25127573 25127935 -177200412 + MLT2C1 LTR ERVL 1 397 0 31 92 0 0 chr4 25128037 25128124 -177200223 + AT_rich Low_complexity Low_complexity 1 87 0 912 236 76 18 chr4 25128267 25128597 -177199750 - L1MCa LINE L1 -4928 1636 1288 3055 257 52 38 chr4 25128608 25129611 -177198736 - L1MCa LINE L1 -4851 1194 178 444 19 0 0 chr4 25129647 25129700 -177198647 + (TG)n Simple_repeat Simple_repeat 1 53 0 279 0 0 0 chr4 25129851 25129864 -177198483 + (TG)n Simple_repeat Simple_repeat 1 44 0 279 0 0 0 chr4 25129864 25129895 -177198452 + (TG)n Simple_repeat Simple_repeat 2 32 0 227 420 23 0 chr4 25129936 25130067 -177198280 - L1MEc LINE L1 -5450 669 536 402 121 0 0 chr4 25130206 25130272 -177198075 + (TG)n Simple_repeat Simple_repeat 2 67 0 28 0 0 0 chr4 25130645 25130673 -177197674 + AT_rich Low_complexity Low_complexity 1 28 0 789 304 0 36 chr4 25130746 25130996 -177197351 + MIR SINE MIR 8 248 -14 259 311 56 0 chr4 25131517 25131607 -177196740 - L2 LINE L2 -46 3226 3132 236 432 76 0 chr4 25131667 25131852 -177196495 - L1MEc LINE L1 -5468 651 453 186 333 8 65 chr4 25131898 25132021 -177196326 - L2 LINE L2 -209 3063 2948 217 387 21 16 chr4 25132296 25132482 -177195865 - L2 LINE L2 -674 2640 2454 386 250 87 0 chr4 25133126 25133230 -177195117 - L2 LINE L2 -16 3256 3144 460 240 8 58 chr4 25133297 25133418 -177194929 + L2 LINE L2 3198 3312 -1 933 277 133 58 chr4 25133774 25134323 -177194024 + MLT1G LTR MaLR 6 590 0 402 149 11 21 chr4 25134418 25134512 -177193835 + T-rich Low_complexity Low_complexity 2 94 0 1484 176 66 84 chr4 25134972 25135410 -177192937 + MSTB1 LTR MaLR 1 430 -2 1803 151 21 7 chr4 25136524 25136825 -177191522 + AluSx SINE Alu 3 307 0 192 338 14 47 chr4 25137266 25137414 -177190933 + L2 LINE L2 192 334 -2980 783 338 106 36 chr4 25137419 25137843 -177190504 + L2 LINE L2 308 806 -2508 495 114 13 0 chr4 25137843 25137922 -177190425 + MADE1 DNA Mariner 1 80 0 783 338 106 36 chr4 25137922 25138225 -177190122 + L2 LINE L2 806 1086 -2228 314 189 18 0 chr4 25138244 25138312 -177190035 - MLT1A1 LTR MaLR 0 646 489 1440 214 137 28 chr4 25138315 25138762 -177189585 - MLT1E1 LTR MaLR -42 612 97 414 322 181 56 chr4 25138821 25139303 -177189044 + L2 LINE L2 1103 1644 -1670 233 180 0 0 chr4 25139342 25139392 -177188955 + L1MD3 LINE L1 7934 7983 -12 877 334 152 24 chr4 25139432 25140147 -177188200 + L2 LINE L2 1751 2557 -757 1256 257 56 10 chr4 25140295 25140632 -177187715 - MLT1A1 LTR MaLR -22 420 1 261 301 0 0 chr4 25140782 25140855 -177187492 + MER94 DNA DNA 62 134 0 348 335 23 34 chr4 25141036 25141212 -177187135 + L2 LINE L2 2174 2347 -967 253 306 54 0 chr4 25141201 25141312 -177187035 - MIR SINE MIR 0 262 146 * 1203 225 53 82 chr4 25141389 25141767 -177186580 - MLT2D LTR ERVL -41 373 7 419 323 39 23 chr4 25141785 25141915 -177186432 - MIR SINE MIR -120 142 11 1013 212 64 29 chr4 25142456 25142802 -177185545 + MSTD LTR MaLR 3 396 0 6824 223 21 49 chr4 25142802 25144587 -177183760 + MSTD-int LTR MaLR 1 1735 0 968 208 63 47 chr4 25144587 25144944 -177183403 + MSTD LTR MaLR 1 395 -1 184 382 15 0 chr4 25144989 25145057 -177183290 + L2 LINE L2 3245 3313 0 876 285 27 19 chr4 25145998 25146258 -177182089 + MIR SINE MIR 1 262 0 30 0 0 0 chr4 25146527 25146557 -177181790 + AT_rich Low_complexity Low_complexity 1 30 0 1312 163 0 0 chr4 25146956 25147165 -177181182 + MER2 DNA MER2_type 1 209 -136 29 28 0 0 chr4 25147187 25147223 -177181124 + AT_rich Low_complexity Low_complexity 1 36 0 232 333 0 12 chr4 25147420 25147501 -177180846 + MIR SINE MIR 26 105 -157 221 286 0 0 chr4 25147541 25147590 -177180757 + L2 LINE L2 3248 3296 -17 458 205 106 66 chr4 25147827 25147978 -177180369 - MLT1H1 LTR MaLR 0 595 439 681 321 31 63 chr4 25148075 25148458 -177179889 - MLT1H1 LTR MaLR -184 371 1 2330 102 0 0 chr4 25148515 25148818 -177179529 - AluSq SINE Alu -9 304 2 343 301 37 44 chr4 25148945 25149081 -177179266 + MIR SINE MIR 57 191 -71 459 326 32 83 chr4 25150227 25150662 -177177685 + L2 LINE L2 1902 2314 -1000 188 205 48 84 chr4 25150753 25150836 -177177511 + L2 LINE L2 2331 2410 -904 226 342 125 35 chr4 25151166 25151334 -177177013 + L2 LINE L2 2580 2731 -583 2447 114 17 3 chr4 25151334 25151693 -177176654 + THE1B LTR MaLR 1 364 0 226 342 125 35 chr4 25151693 25151843 -177176504 + L2 LINE L2 2731 2927 -387 206 367 64 9 chr4 25151984 25152093 -177176254 + L2 LINE L2 3158 3272 0 373 275 18 18 chr4 25153062 25153229 -177175118 + (CA)n Simple_repeat Simple_repeat 1 167 0 216 0 0 0 chr4 25153269 25153293 -177175054 + (CA)n Simple_repeat Simple_repeat 2 25 0 355 373 27 9 chr4 25153383 25153603 -177174744 + MIR SINE MIR 13 236 -26 217 343 14 0 chr4 25153724 25153797 -177174550 + L2 LINE L2 2445 2518 -796 260 290 224 9 chr4 25154069 25154176 -177174171 + L2 LINE L2 3142 3271 -1 6141 57 0 0 chr4 25155784 25156550 -177171797 - L1PA6 LINE L1 0 6154 5389 205 130 0 65 chr4 25156696 25156742 -177171605 - L2 LINE L2 0 3313 3271 4523 265 86 19 chr4 25156765 25159550 -177168797 - L1ME1 LINE L1 -3 6232 3250 753 254 43 47 chr4 25159612 25159643 -177168704 - L1ME1 LINE L1 -4555 1841 1811 2094 81 3 0 chr4 25159643 25159928 -177168419 - L1PA10 LINE L1 -4 6164 5879 753 254 43 47 chr4 25159928 25160175 -177168172 - L1ME1 LINE L1 -4585 1811 1564 627 224 64 0 chr4 25160277 25160402 -177167945 - FLAM_C SINE Alu 0 133 1 1164 157 93 25 chr4 25160404 25160684 -177167663 - L1MC3 LINE L1 -7 7778 7480 337 279 15 73 chr4 25160724 25160928 -177167419 - L1ME1 LINE L1 -4910 1307 1116 2347 265 18 31 chr4 25160937 25161715 -177166632 - L1ME1 LINE L1 -5395 1001 234 998 289 113 20 chr4 25161747 25162197 -177166150 + L2 LINE L2 2081 2572 -742 2478 194 49 16 chr4 25162444 25163016 -177165331 - L1MD3 LINE L1 -1 7994 7404 273 250 48 48 chr4 25163016 25163100 -177165247 - MLT1F1 LTR MaLR -442 125 42 803 206 25 0 chr4 25163105 25163309 -177165038 - L1MD3 LINE L1 -920 7075 6867 207 100 0 0 chr4 25165602 25165632 -177162715 + (A)n Simple_repeat Simple_repeat 1 30 0 190 318 0 16 chr4 25166730 25166793 -177161554 + L2 LINE L2 3207 3268 -4 192 354 15 15 chr4 25166819 25166884 -177161463 - L3b LINE CR1 -5 1578 1514 * 297 284 14 92 chr4 25166880 25167021 -177161326 - MIR3 SINE MIR -43 165 36 534 154 0 28 chr4 25168384 25168527 -177159820 + CT-rich Low_complexity Low_complexity 2 140 0 1942 125 86 49 chr4 25168815 25169223 -177159124 - L1MA7 LINE L1 -6 6285 5863 389 178 20 8 chr4 25169219 25169321 -177159026 + L1MA7 LINE L1 5746 5843 -340 * 3437 149 45 16 chr4 25169567 25170213 -177158134 + L1PB4 LINE L1 5491 6155 -1 28 0 0 0 chr4 25170343 25170371 -177157976 + AT_rich Low_complexity Low_complexity 1 28 0 889 192 0 0 chr4 25170526 25170693 -177157654 + L1MB2 LINE L1 5998 6164 -7 2165 114 21 0 chr4 25171239 25171529 -177156818 + AluSx SINE Alu 1 296 -16 491 85 12 37 chr4 25171955 25172037 -177156310 - MADE1 DNA Mariner 0 80 1 2083 186 96 4 chr4 25172037 25172527 -177155820 - L1MA8 LINE L1 -12 6279 5745 3016 88 55 2 chr4 25172527 25172558 -177155789 - MLT2A1 LTR ERVL 0 444 416 252 59 0 0 chr4 25172558 25172592 -177155755 + (TA)n Simple_repeat Simple_repeat 2 35 0 3016 88 55 2 chr4 25172592 25172982 -177155365 - MLT2A1 LTR ERVL -28 416 1 42945 82 11 9 chr4 25172982 25178623 -177149724 - HERVL-A1-A1 LTR ERVL 0 5654 1 3345 76 7 11 chr4 25178623 25179069 -177149278 - MLT2A1 LTR ERVL 0 444 1 5775 184 60 8 chr4 25179073 25180765 -177147582 - L1MA8 LINE L1 -546 5745 3956 1781 168 26 45 chr4 25181300 25181682 -177146665 - THE1C LTR MaLR 0 375 1 2018 89 41 0 chr4 25181921 25182192 -177146155 - AluSx SINE Alu 0 312 31 3636 229 58 53 chr4 25182219 25183483 -177144864 + L1MC4 LINE L1 6772 8041 -1 197 345 67 17 chr4 25183509 25183628 -177144719 - L2 LINE L2 -12 3260 3136 209 300 38 25 chr4 25183702 25183782 -177144565 + L2 LINE L2 2700 2780 -534 251 250 25 25 chr4 25183801 25183881 -177144466 + MER117 DNA MER1_type 12 91 -106 1821 206 85 2 chr4 25183946 25184369 -177143978 - MLT1C LTR MaLR -2 465 8 413 339 24 6 chr4 25184599 25184767 -177143580 + L2 LINE L2 3118 3288 -25 2273 135 35 65 chr4 25187387 25187818 -177140529 - MSTB1 LTR MaLR -12 420 3 2744 243 35 6 chr4 25188086 25188719 -177139628 + MER82 DNA MER2_type 2 652 -1 213 344 46 92 chr4 25189070 25189288 -177139059 - L2 LINE L2 -36 3236 3029 785 280 0 0 chr4 25189691 25189877 -177138470 + MER5A DNA MER1_type 4 189 0 445 282 154 6 chr4 25190221 25190377 -177137970 + MER5A DNA MER1_type 11 189 0 552 294 112 11 chr4 25190502 25190689 -177137658 - MIR SINE MIR -21 241 36 1905 158 57 14 chr4 25191206 25191555 -177136792 - THE1B LTR MaLR 0 364 1 822 276 22 4 chr4 25192680 25192905 -177135442 + L3b LINE CR1 1109 1337 -246 2108 139 0 19 chr4 25193011 25193328 -177135019 + AluSx SINE Alu 1 311 -1 234 0 0 0 chr4 25194723 25194749 -177133598 + (T)n Simple_repeat Simple_repeat 1 26 0 269 268 24 47 chr4 25195035 25195162 -177133185 + LTR67 LTR ERVL 432 555 -2 358 366 26 21 chr4 25195375 25195569 -177132778 + L3 LINE CR1 586 780 -797 3656 192 47 46 chr4 25195576 25196440 -177131907 - L1MB8 LINE L1 0 6178 5303 2398 74 0 7 chr4 25196440 25196738 -177131609 - AluY SINE Alu -15 296 1 3656 192 47 46 chr4 25196738 25197431 -177130916 - L1MB8 LINE L1 -875 5303 4613 21 0 0 0 chr4 25197801 25197822 -177130525 + AT_rich Low_complexity Low_complexity 1 21 0 364 317 77 40 chr4 25198569 25199827 -177128520 - L1M4 LINE L1 -953 5193 3889 1405 230 74 35 chr4 25199848 25200347 -177128000 + L1MA9 LINE L1 5766 6289 -23 370 307 14 0 chr4 25200551 25200691 -177127656 - L1M4 LINE L1 -2581 3565 3424 477 268 24 8 chr4 25200952 25201075 -177127272 - L2 LINE L2 0 3313 3189 22 35 0 0 chr4 25201289 25201318 -177127029 + AT_rich Low_complexity Low_complexity 1 29 0 250 297 214 6 chr4 25201538 25201720 -177126627 - HAL1 LINE L1 -784 1723 1504 24 0 0 0 chr4 25201749 25201773 -177126574 + AT_rich Low_complexity Low_complexity 1 24 0 346 348 57 54 chr4 25201853 25202169 -177126178 - L1MEd LINE L1 -4886 1233 917 270 256 33 8 chr4 25203289 25203410 -177124937 + (TTATA)n Simple_repeat Simple_repeat 1 124 0 24 0 0 0 chr4 25204925 25204949 -177123398 + AT_rich Low_complexity Low_complexity 1 24 0 190 382 11 22 chr4 25205206 25205295 -177123052 - MER5A DNA MER1_type -38 151 64 301 100 0 0 chr4 25205295 25205335 -177123012 + LTR7 LTR ERV1 1 40 -410 2177 157 45 23 chr4 25205355 25205795 -177122552 + LTR7 LTR ERV1 1 450 0 932 188 188 17 chr4 25206190 25206424 -177121923 + AluSg1 SINE Alu 3 276 -33 752 121 13 32 chr4 25206427 25206584 -177121763 + (GGAA)n Simple_repeat Simple_repeat 3 156 0 229 352 11 23 chr4 25206604 25206692 -177121655 + MER5B DNA MER1_type 17 103 -75 1361 179 17 96 chr4 25206692 25207058 -177121289 + MLT1A2 LTR MaLR 1 431 -36 367 184 112 0 chr4 25207261 25207359 -177120988 + MLT1B LTR MaLR 27 135 -255 805 215 0 29 chr4 25207675 25207847 -177120500 - MLT1A1 LTR MaLR -198 167 1 2393 151 39 10 chr4 25208117 25208533 -177119814 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr4 25208786 25208807 -177119540 + AT_rich Low_complexity Low_complexity 1 21 0 398 355 79 18 chr4 25208880 25209108 -177119239 + MIR SINE MIR 20 261 -1 1171 196 96 29 chr4 25209325 25209637 -177118710 - MLT1A1 LTR MaLR -31 334 2 835 295 87 38 chr4 25210476 25211005 -177117342 - MLT1H1 LTR MaLR 0 555 1 21 0 0 0 chr4 25211123 25211144 -177117203 + AT_rich Low_complexity Low_complexity 1 21 0 258 32 0 0 chr4 25212187 25212218 -177116129 + (T)n Simple_repeat Simple_repeat 1 31 0 332 266 138 9 chr4 25212408 25212517 -177115830 + MLT1K LTR MaLR 395 517 -71 230 233 0 0 chr4 25212527 25212570 -177115777 + (CA)n Simple_repeat Simple_repeat 2 44 0 201 39 0 0 chr4 25212571 25212597 -177115750 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 468 254 52 94 chr4 25213023 25213310 -177115037 - MLT1I LTR MaLR -21 388 114 601 223 40 34 chr4 25213557 25213705 -177114642 - LTR48B LTR ERV1 0 644 496 301 278 35 0 chr4 25213716 25213831 -177114516 - LTR49-int LTR ERV1 -2300 3963 3845 404 238 26 90 chr4 25213907 25214096 -177114251 - LTR49-int LTR ERV1 -2686 3577 3401 418 250 88 63 chr4 25214117 25214401 -177113946 - LTR49-int LTR ERV1 -2960 1976 1686 21 57 0 0 chr4 25214489 25214524 -177113823 + AT_rich Low_complexity Low_complexity 1 35 0 4534 157 20 25 chr4 25214526 25214891 -177113456 - L1PB3 LINE L1 -7 6147 5782 243 0 0 0 chr4 25214891 25214918 -177113429 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2136 88 22 0 chr4 25214918 25215192 -177113155 - AluSc SINE Alu -29 280 1 4534 157 20 25 chr4 25215192 25216055 -177112292 - L1PB3 LINE L1 -370 5784 4918 363 215 128 27 chr4 25216075 25216224 -177112123 - LTR57-int LTR ERVL -3919 1424 1261 * 558 237 17 25 chr4 25216179 25216406 -177111941 - LTR49-int LTR ERV1 -3202 3129 1146 739 234 88 119 chr4 25216415 25216980 -177111367 - LTR49-int LTR ERV1 -4228 2103 1556 232 288 15 0 chr4 25217918 25217984 -177110363 - tRNA-Glu-GAG tRNA tRNA -2 73 7 24 0 0 0 chr4 25218044 25218068 -177110279 + AT_rich Low_complexity Low_complexity 1 24 0 69 48 0 0 chr4 25218168 25218272 -177110075 + AT_rich Low_complexity Low_complexity 1 104 0 1908 225 47 79 chr4 25218336 25219377 -177108970 - L1MDa LINE L1 -2852 3688 2681 6244 237 117 28 chr4 25219391 25219669 -177108678 - L1MDa LINE L1 -3945 2595 2343 243 88 0 0 chr4 25219669 25219703 -177108644 + (TG)n Simple_repeat Simple_repeat 1 34 0 6244 237 117 28 chr4 25219703 25221791 -177106556 - L1MDa LINE L1 -4197 2343 18 445 331 11 27 chr4 25222190 25222374 -177105973 - MIR SINE MIR -70 192 12 223 267 0 0 chr4 25222796 25222841 -177105506 - L2 LINE L2 -18 3254 3210 2342 72 0 3 chr4 25223047 25223379 -177104968 - AluY SINE Alu 0 331 1 1598 121 0 0 chr4 25223384 25223632 -177104715 - L1MA2 LINE L1 0 6304 6057 4594 128 24 28 chr4 25224219 25224831 -177103516 - L1MA2 LINE L1 -232 6072 5471 2383 100 0 0 chr4 25224831 25225132 -177103215 + AluSc SINE Alu 2 302 -7 4594 128 24 28 chr4 25225132 25225731 -177102616 - L1MA2 LINE L1 -833 5471 4871 1263 246 3 0 chr4 25225731 25226044 -177102303 - L1 LINE L1 -3458 4107 3794 * 4545 182 42 0 chr4 25226042 25226855 -177101492 - L1 LINE L1 -5932 1633 787 241 349 46 9 chr4 25227074 25227183 -177101164 - L2 LINE L2 -3 3310 3198 288 293 66 34 chr4 25227306 25227472 -177100875 - L2 LINE L2 -189 3083 2911 288 339 58 5 chr4 25228298 25228522 -177099825 - L2 LINE L2 -1 3312 3077 595 336 138 15 chr4 25228536 25228602 -177099745 - L2 LINE L2 -164 3149 3093 587 281 151 52 chr4 25228602 25228813 -177099534 - MLT1H1 LTR MaLR 0 555 366 192 40 0 0 chr4 25228813 25228838 -177099509 + (TC)n Simple_repeat Simple_repeat 2 26 0 587 281 151 52 chr4 25228838 25229131 -177099216 - MLT1H1 LTR MaLR -189 366 1 595 336 138 15 chr4 25229131 25229595 -177098752 - L2 LINE L2 -220 3093 2555 279 337 0 6 chr4 25229598 25229802 -177098545 + (TA)n Simple_repeat Simple_repeat 1 202 0 1032 201 112 5 chr4 25229843 25230057 -177098290 + MER8 DNA MER2_type 3 239 0 192 289 165 16 chr4 25230155 25230276 -177098071 - L2 LINE L2 -782 2532 2394 545 333 29 24 chr4 25230460 25230706 -177097641 + MIR SINE MIR 6 252 -10 1756 186 3 22 chr4 25231647 25231965 -177096382 - AluJb SINE Alu 0 312 1 16301 166 71 11 chr4 25232316 25239469 -177088878 + L1PA14 LINE L1 5 7597 -2 572 317 95 18 chr4 25239763 25240047 -177088300 + L2 LINE L2 3008 3313 0 192 306 0 20 chr4 25240186 25240235 -177088112 + MIR SINE MIR 19 66 -196 195 313 37 75 chr4 25240373 25240507 -177087840 - MER5A DNA MER1_type -6 183 55 931 353 46 15 chr4 25240877 25241396 -177086951 - L2 LINE L2 -944 2370 1836 196 268 56 0 chr4 25241426 25241497 -177086850 + MIR SINE MIR 118 192 -70 264 382 49 0 chr4 25242065 25242209 -177086138 - MIR SINE MIR -76 186 36 21 36 0 0 chr4 25242383 25242411 -177085936 + AT_rich Low_complexity Low_complexity 1 28 0 1427 221 13 45 chr4 25242621 25242996 -177085351 - MLT1A1 LTR MaLR -2 363 1 821 213 128 27 chr4 25243273 25243531 -177084816 + L1MA10 LINE L1 6050 6333 -1 767 123 0 0 chr4 25244050 25244164 -177084183 + L1PA7 LINE L1 1 114 -6347 * 3652 99 11 0 chr4 25244163 25244707 -177083640 + L1PA7 LINE L1 4259 4808 -1653 6768 72 2 1 chr4 25244708 25246420 -177081927 + L1PA7 LINE L1 4744 6458 -11 2652 84 5 10 chr4 25247014 25247407 -177080940 - THE1B-int LTR MaLR -1188 392 2 1920 140 23 26 chr4 25247408 25247750 -177080597 - THE1B LTR MaLR 0 364 24 20809 25 0 1 chr4 25247852 25250679 -177077668 + L1P1 LINE L1 2789 5614 -541 22474 42 44 3 chr4 25250779 25253751 -177074596 - L1P LINE L1 -3052 3094 1 2856 161 18 4 chr4 25253750 25254240 -177074107 - L1PA15-16 LINE L1 -5297 1552 1056 * 3346 180 22 8 chr4 25254242 25254910 -177073437 - L1MC3 LINE L1 -989 6796 6119 399 295 91 50 chr4 25255455 25255838 -177072509 - L1MC5 LINE L1 -276 7685 7287 454 238 34 27 chr4 25255972 25256181 -177072166 - L1MC4 LINE L1 -737 7224 7049 378 327 112 48 chr4 25256599 25257098 -177071249 - L1MC4a LINE L1 -1180 6628 6098 390 262 215 3 chr4 25257163 25257461 -177070886 - L1MC4a LINE L1 -1778 6030 5670 269 144 0 99 chr4 25257556 25257667 -177070680 + (TTA)n Simple_repeat Simple_repeat 1 100 0 21 36 0 0 chr4 25258322 25258350 -177069997 + AT_rich Low_complexity Low_complexity 1 28 0 1297 111 0 0 chr4 25258701 25258872 -177069475 - AluSg/x SINE Alu -7 305 135 4082 223 26 42 chr4 25260609 25261639 -177066708 + L1PA12 LINE L1 862 1907 -5677 1715 125 19 106 chr4 25261639 25261960 -177066387 + AluSx SINE Alu 1 293 -19 4082 223 26 42 chr4 25261960 25262260 -177066087 + L1PA12 LINE L1 1907 2210 -5374 2154 127 3 3 chr4 25262260 25262568 -177065779 + AluSx SINE Alu 1 308 -4 4082 223 26 42 chr4 25262568 25263142 -177065205 + L1PA12 LINE L1 2210 3541 -4043 * 6856 230 26 7 chr4 25263133 25264671 -177063676 + L1P LINE L1 3762 5329 -817 403 159 0 0 chr4 25264671 25264740 -177063607 + AluS SINE Alu 1 69 -242 349 91 15 0 chr4 25265369 25265435 -177062912 - L1P LINE L1 -845 5329 5263 420 55 0 0 chr4 25265752 25265807 -177062540 + (CA)n Simple_repeat Simple_repeat 2 56 0 344 192 0 0 chr4 25269666 25269739 -177058608 + L1MB8 LINE L1 6094 6166 -12 207 0 0 0 chr4 25270484 25270507 -177057840 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2202 118 0 0 chr4 25271201 25271497 -177056850 - AluSg SINE Alu -10 300 5 312 70 0 0 chr4 25271646 25271689 -177056658 + (CA)n Simple_repeat Simple_repeat 2 44 0 213 231 0 0 chr4 25272422 25272474 -177055873 + (CATA)n Simple_repeat Simple_repeat 3 54 0 1215 274 47 31 chr4 25272499 25273248 -177055099 + L1M4c LINE L1 1275 2203 -4181 26 30 0 0 chr4 25273277 25273310 -177055037 + AT_rich Low_complexity Low_complexity 1 33 0 1151 72 0 0 chr4 25273468 25273621 -177054726 - L1PA6 LINE L1 -6 6148 5996 21 36 0 0 chr4 25273810 25273838 -177054509 + AT_rich Low_complexity Low_complexity 1 28 0 2231 102 0 10 chr4 25274563 25274857 -177053490 - AluSg SINE Alu -19 291 1 1800 293 64 7 chr4 25275180 25275787 -177052560 - L2 LINE L2 -357 2957 2316 1695 230 39 23 chr4 25275823 25276262 -177052085 + MLT1C LTR MaLR 6 451 -16 189 0 0 0 chr4 25278016 25278037 -177050310 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 261 0 0 0 chr4 25278036 25278065 -177050282 + (GA)n Simple_repeat Simple_repeat 2 30 0 251 221 0 13 chr4 25278089 25278166 -177050181 + (TATG)n Simple_repeat Simple_repeat 1 76 0 255 61 0 0 chr4 25278171 25278204 -177050143 + (CA)n Simple_repeat Simple_repeat 2 34 0 213 246 0 35 chr4 25278214 25278271 -177050076 + L2 LINE L2 3259 3313 0 413 250 128 20 chr4 25278431 25278579 -177049768 + MIR SINE MIR 75 238 -24 24 0 0 0 chr4 25278949 25278973 -177049374 + AT_rich Low_complexity Low_complexity 1 24 0 1091 77 0 0 chr4 25280359 25280489 -177047858 - AluSq/x SINE Alu -181 132 3 4539 159 21 4 chr4 25280491 25281316 -177047031 - L1MA4 LINE L1 -237 6063 5229 747 213 22 6 chr4 25281521 25281704 -177046643 - L1MC3 LINE L1 -7 7778 7593 2943 12 0 12 chr4 25281806 25282129 -177046218 + L1HS LINE L1 5815 6135 -20 203 0 37 0 chr4 25282129 25282156 -177046191 + (TAA)n Simple_repeat Simple_repeat 3 30 0 2943 12 0 12 chr4 25282156 25282176 -177046171 + L1HS LINE L1 6135 6154 -1 209 0 97 0 chr4 25282570 25282601 -177045746 + A-rich Low_complexity Low_complexity 3 36 0 12751 207 32 8 chr4 25282602 25285219 -177043128 + L1PA16 LINE L1 1535 4088 -2781 273 29 0 0 chr4 25285219 25285253 -177043094 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 12751 207 32 8 chr4 25285253 25287834 -177040513 + L1PA16 LINE L1 4088 6860 -9 27 0 0 0 chr4 25287834 25287861 -177040486 + AT_rich Low_complexity Low_complexity 1 27 0 335 242 0 116 chr4 25287868 25287931 -177040416 + L1MC3 LINE L1 6793 6862 -923 246 81 0 0 chr4 25287931 25287968 -177040379 + (CA)n Simple_repeat Simple_repeat 1 37 0 335 242 0 116 chr4 25287968 25288102 -177040245 + L1MC3 LINE L1 6862 6967 -818 * 1035 160 17 0 chr4 25288096 25288271 -177040076 + L1P4 LINE L1 5523 5700 -466 471 191 82 0 chr4 25288290 25288400 -177039947 + L1MC3 LINE L1 6980 7098 -687 294 231 15 0 chr4 25288401 25288466 -177039881 + MLT1F1 LTR MaLR 37 102 -465 1598 163 41 0 chr4 25288497 25288792 -177039555 + L1MC3 LINE L1 7230 7536 -249 308 298 24 0 chr4 25288792 25288876 -177039471 + L1MC4 LINE L1 6618 6703 -1339 271 330 132 48 chr4 25290051 25290278 -177038069 - L2 LINE L2 -2 3270 3025 206 328 86 11 chr4 25290688 25290874 -177037473 - L2 LINE L2 -924 2390 2191 1536 175 60 35 chr4 25290916 25291282 -177037065 + THE1C LTR MaLR 1 375 0 228 314 15 66 chr4 25291354 25291491 -177036856 - MER5B DNA MER1_type -20 158 29 335 221 29 29 chr4 25292033 25292137 -177036210 + L1ME4a LINE L1 5808 5911 -210 299 255 61 51 chr4 25292571 25292669 -177035678 + L2 LINE L2 3184 3282 -31 4758 213 15 18 chr4 25294506 25294769 -177033578 - L1 LINE L1 -1610 4536 4274 1542 169 26 55 chr4 25294769 25294930 -177033417 - MER44D DNA MER2_type -1883 608 444 2205 134 0 0 chr4 25294930 25295237 -177033110 + AluSx SINE Alu 1 307 -5 1542 169 26 55 chr4 25295237 25295423 -177032924 - MER44D DNA MER2_type -2047 444 1 4758 213 15 18 chr4 25295423 25296263 -177032084 - L1 LINE L1 -1872 4274 3436 2607 218 17 30 chr4 25296260 25296957 -177031390 + L1 LINE L1 4552 5239 -907 * 1863 195 19 3 chr4 25297062 25297421 -177030926 - L1MC3 LINE L1 -226 7977 7613 393 209 11 11 chr4 25297424 25297515 -177030832 - MLT1F1 LTR MaLR -442 125 35 417 218 89 0 chr4 25297515 25297639 -177030708 - L1MC3 LINE L1 -692 7511 7377 272 167 0 0 chr4 25297639 25297687 -177030660 - MLT2D LTR ERVL 0 414 367 180 0 0 0 chr4 25297712 25297732 -177030615 + (TG)n Simple_repeat Simple_repeat 2 21 0 1603 190 6 35 chr4 25297732 25298048 -177030299 - MLT2D LTR ERVL -40 374 68 614 186 46 131 chr4 25298048 25298285 -177030062 - L1MC3 LINE L1 -847 7356 7140 1349 75 0 0 chr4 25298289 25298463 -177029884 + AluY SINE Alu 137 310 -1 6909 234 55 65 chr4 25298463 25299253 -177029094 - L1MC3 LINE L1 -743 5821 5025 1706 182 39 0 chr4 25299253 25299366 -177028981 + AluJb SINE Alu 7 114 -198 180 0 0 0 chr4 25299366 25299386 -177028961 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1706 182 39 0 chr4 25299386 25299552 -177028795 + AluJb SINE Alu 114 297 -15 6909 234 55 65 chr4 25299552 25300324 -177028023 - L1MC3 LINE L1 -1539 5025 4247 2165 100 29 16 chr4 25300324 25300633 -177027714 - AluSq SINE Alu 0 313 1 6909 234 55 65 chr4 25300633 25301374 -177026973 - L1MC3 LINE L1 -2317 4247 3500 637 195 35 40 chr4 25301374 25301591 -177026756 - AluJb SINE Alu 0 339 124 6909 234 55 65 chr4 25301591 25303892 -177024455 - L1MC3 LINE L1 -3064 3500 2414 479 241 9 0 chr4 25303901 25304013 -177024334 + LTR48B LTR ERV1 530 642 -2 992 222 121 70 chr4 25304050 25304406 -177023941 - MLT1A2 LTR MaLR 0 374 1 1909 243 55 48 chr4 25304406 25305717 -177022630 - L1MC3 LINE L1 -4238 2327 570 1073 262 96 19 chr4 25305815 25306128 -177022219 - L1MC3 LINE L1 -5484 561 225 660 199 21 14 chr4 25306130 25306271 -177022076 + MLT1A1 LTR MaLR 1 142 -223 2382 214 27 32 chr4 25306276 25306979 -177021368 - LTR27 LTR ERV1 -2 634 3 11038 140 14 24 chr4 25306979 25309047 -177019300 - LTR27-int LTR ERV1 -1 6995 4908 2126 89 28 17 chr4 25309047 25309338 -177019009 + AluY SINE Alu 3 296 -15 11038 140 14 24 chr4 25309338 25309399 -177018948 - LTR27-int LTR ERV1 -2088 4908 2231 1214 193 41 0 chr4 25309399 25309617 -177018730 + MLT1A1 LTR MaLR 139 365 0 338 296 39 69 chr4 25309618 25309871 -177018476 - L1MC3 LINE L1 -5819 296 1 1576 211 3 0 chr4 25309887 25310171 -177018176 - AluJb SINE Alu -27 285 1 624 158 10 0 chr4 25310317 25310418 -177017929 - LTR29 LTR ERV1 0 622 521 427 208 233 0 chr4 25310536 25310656 -177017691 - AluJo SINE Alu -152 160 13 1710 174 49 30 chr4 25310657 25311025 -177017322 - THE1C LTR MaLR 0 375 1 833 338 68 21 chr4 25311720 25312039 -177016308 + L2 LINE L2 2776 3129 -184 2212 119 0 0 chr4 25312039 25312341 -177016006 - AluSg SINE Alu -8 302 1 833 338 68 21 chr4 25312341 25312536 -177015811 + L2 LINE L2 3129 3313 0 2181 147 28 6 chr4 25313419 25313773 -177014574 - THE1B LTR MaLR 0 364 3 1826 182 22 14 chr4 25313961 25314323 -177014024 + MLT1A1 LTR MaLR 1 365 0 233 343 155 17 chr4 25314742 25314923 -177013424 - MIR SINE MIR -37 225 20 327 225 0 0 chr4 25315287 25315358 -177012989 - L1ME LINE L1 -312 5809 5739 21 0 0 0 chr4 25315494 25315515 -177012832 + AT_rich Low_complexity Low_complexity 1 21 0 312 328 8 32 chr4 25315534 25315659 -177012688 + L2 LINE L2 3162 3283 -30 186 71 0 0 chr4 25316247 25316275 -177012072 + (A)n Simple_repeat Simple_repeat 1 28 0 2102 67 35 58 chr4 25316319 25316631 -177011716 - AluY SINE Alu -6 305 1 620 315 80 5 chr4 25316634 25316847 -177011500 - MIR SINE MIR -14 248 20 474 330 34 29 chr4 25316967 25317176 -177011171 - MIR SINE MIR -36 226 17 293 269 32 0 chr4 25317185 25317278 -177011069 + CT-rich Low_complexity Low_complexity 3 98 0 439 127 25 42 chr4 25317373 25317484 -177010863 + CT-rich Low_complexity Low_complexity 4 114 -5 1747 147 0 39 chr4 25317484 25317763 -177010584 - AluJb SINE Alu -44 268 1 201 174 22 0 chr4 25317915 25317961 -177010386 + (AAATG)n Simple_repeat Simple_repeat 3 49 0 269 348 169 0 chr4 25318619 25318737 -177009610 - L2 LINE L2 -1 3271 3134 27 49 0 0 chr4 25319192 25319233 -177009114 + AT_rich Low_complexity Low_complexity 1 41 0 448 254 60 43 chr4 25319236 25319468 -177008879 + L1M4 LINE L1 3754 3989 -2157 644 327 59 32 chr4 25319485 25319892 -177008455 - LTR16A LTR ERVL -20 430 13 275 279 0 0 chr4 25320009 25320095 -177008252 + L1M4 LINE L1 4151 4236 -1910 697 288 97 64 chr4 25320476 25320946 -177007401 + HAL1b LINE L1 328 836 -512 1831 158 0 4 chr4 25320946 25321224 -177007123 + AluJo SINE Alu 15 291 -21 697 288 97 64 chr4 25321224 25321524 -177006823 + HAL1b LINE L1 836 1124 -224 30 109 0 0 chr4 25321679 25321807 -177006540 + AT_rich Low_complexity Low_complexity 1 128 0 287 336 28 5 chr4 25321893 25322104 -177006243 + L1M4 LINE L1 4397 4612 -1534 223 167 45 0 chr4 25322161 25322227 -177006120 + (TA)n Simple_repeat Simple_repeat 2 70 0 183 100 0 0 chr4 25322505 25322535 -177005812 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 330 277 148 19 chr4 25322796 25322951 -177005396 + MER69A DNA AcHobo 3 177 0 502 229 54 42 chr4 25323078 25323244 -177005103 - MIR SINE MIR -3 259 92 240 218 56 106 chr4 25323499 25323641 -177004706 + HAL1b LINE L1 1199 1333 -15 300 292 95 54 chr4 25324792 25324960 -177003387 + MIR SINE MIR 2 176 -86 509 306 8 0 chr4 25325059 25325193 -177003154 - MIR SINE MIR -106 156 22 28 48 0 0 chr4 25325194 25325236 -177003111 + AT_rich Low_complexity Low_complexity 1 42 0 226 214 0 0 chr4 25325504 25325546 -177002801 + (TG)n Simple_repeat Simple_repeat 1 42 0 1900 217 76 24 chr4 25326210 25326629 -177001718 + MLT2B1 LTR ERVL 1 441 -79 1202 185 141 0 chr4 25326652 25326950 -177001397 + MER2 DNA MER2_type 2 341 -3 3176 242 35 98 chr4 25326961 25327056 -177001291 + MLT1A1-int LTR MaLR 5 104 -1631 2463 115 11 13 chr4 25327056 25327430 -177000917 - THE1C LTR MaLR 0 375 3 9414 134 30 58 chr4 25327432 25329058 -176999289 - THE1C-int LTR MaLR -1 1579 1 2599 111 11 0 chr4 25329058 25329429 -176998918 - THE1C LTR MaLR 0 375 1 3176 242 35 98 chr4 25329429 25330801 -176997546 + MLT1A1-int LTR MaLR 103 1735 0 1128 241 88 29 chr4 25330801 25330891 -176997456 + MLT1A1 LTR MaLR 4 87 -278 2136 142 37 3 chr4 25330891 25331243 -176997104 - THE1B LTR MaLR 0 364 1 1128 241 88 29 chr4 25331243 25331493 -176996854 + MLT1A1 LTR MaLR 87 364 -1 1194 320 61 7 chr4 25331659 25332118 -176996229 - MLT1J LTR MaLR -27 484 1 379 252 164 42 chr4 25332459 25332697 -176995650 + MLT1L LTR MaLR 22 288 -327 23 0 0 0 chr4 25334179 25334202 -176994145 + AT_rich Low_complexity Low_complexity 1 23 0 293 250 75 12 chr4 25334603 25334683 -176993664 - L2 LINE L2 -40 3232 3148 195 42 0 0 chr4 25334707 25334731 -176993616 + (CAA)n Simple_repeat Simple_repeat 1 24 0 344 237 53 18 chr4 25335053 25335167 -176993180 - MLT1J1 LTR MaLR -1 445 328 363 78 0 0 chr4 25335482 25335533 -176992814 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 274 235 34 109 chr4 25336735 25336854 -176991493 - MIR SINE MIR -64 198 89 379 356 44 0 chr4 25337043 25337203 -176991144 - MIR SINE MIR -18 244 78 416 244 42 25 chr4 25337972 25338091 -176990256 + MIR SINE MIR 91 211 -51 448 346 139 13 chr4 25338909 25339282 -176989065 + L2 LINE L2 2557 2976 -338 221 245 0 0 chr4 25339406 25339455 -176988892 + (TTCA)n Simple_repeat Simple_repeat 3 51 0 207 314 116 41 chr4 25339462 25339583 -176988764 + L2 LINE L2 3137 3266 -6 * 279 302 146 14 chr4 25339578 25339790 -176988557 - MIR SINE MIR 0 262 23 285 287 149 33 chr4 25341495 25341676 -176986671 - MIR SINE MIR -6 256 55 192 163 0 0 chr4 25342776 25342819 -176985528 + (CA)n Simple_repeat Simple_repeat 2 44 0 2948 175 50 2 chr4 25343269 25343869 -176984478 + L1MB1 LINE L1 5536 6164 -4 214 265 0 0 chr4 25344139 25344188 -176984159 - MIR3 SINE MIR -26 182 134 361 295 58 33 chr4 25344356 25344561 -176983786 + MIR SINE MIR 4 212 -50 2425 122 3 0 chr4 25345598 25345966 -176982381 - L1PB1 LINE L1 -1 6150 5782 509 163 0 30 chr4 25345966 25346101 -176982246 + (TA)n Simple_repeat Simple_repeat 2 132 0 3634 85 23 8 chr4 25346105 25346636 -176981711 - L1PB1 LINE L1 -359 5792 5254 690 312 17 13 chr4 25346694 25346925 -176981422 + MIR SINE MIR 14 245 -17 186 222 0 0 chr4 25346896 25346932 -176981415 + L2 LINE L2 3262 3297 -16 * 333 204 169 28 chr4 25346987 25347129 -176981218 - MER103 DNA DNA -2 164 3 291 54 0 0 chr4 25347821 25347858 -176980489 + (TA)n Simple_repeat Simple_repeat 1 37 0 311 364 38 23 chr4 25348682 25348814 -176979533 + L2 LINE L2 3139 3272 0 202 317 0 0 chr4 25349138 25349198 -176979149 + L2 LINE L2 3242 3301 -12 42405 36 22 1 chr4 25349199 25355227 -176973120 - L1PA3 LINE L1 0 6155 1 536 151 12 0 chr4 25355321 25355407 -176972940 + MER20 DNA MER1_type 1 87 -132 3244 223 39 18 chr4 25355979 25356831 -176971516 - L1MA9 LINE L1 -30 6282 5413 229 371 14 14 chr4 25358011 25358151 -176970196 + L2 LINE L2 2602 2741 -573 700 207 20 7 chr4 25358328 25358478 -176969869 + MER96B DNA MER1_type? 1 152 -265 21 0 0 0 chr4 25358480 25358501 -176969846 + AT_rich Low_complexity Low_complexity 1 21 0 1096 216 172 35 chr4 25358802 25359131 -176969216 + MLT1E1 LTR MaLR 1 284 -370 261 0 0 0 chr4 25359131 25359160 -176969187 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1096 216 172 35 chr4 25359160 25359349 -176968998 + MLT1E1 LTR MaLR 284 654 0 253 355 78 44 chr4 25359351 25359672 -176968675 + L2 LINE L2 2610 2941 -373 21 36 0 0 chr4 25359983 25360011 -176968336 + AT_rich Low_complexity Low_complexity 1 28 0 1568 150 35 4 chr4 25360336 25360596 -176967751 - Tigger3(Golem) DNA MER2_type -2760 269 2 414 0 0 0 chr4 25360600 25360646 -176967701 + (CA)n Simple_repeat Simple_repeat 2 47 0 1227 267 84 5 chr4 25360646 25361028 -176967319 - MLT2B1 LTR ERVL -100 420 9 643 298 97 70 chr4 25361543 25362157 -176966190 + HAL1b LINE L1 71 584 -833 273 282 130 27 chr4 25362161 25362462 -176965885 + HAL1b LINE L1 635 966 -451 28 79 0 0 chr4 25363009 25363072 -176965275 + AT_rich Low_complexity Low_complexity 1 63 0 341 305 75 10 chr4 25363316 25363624 -176964723 - L1ME4a LINE L1 -178 5943 5616 658 243 24 44 chr4 25363927 25364133 -176964214 + Charlie2 DNA MER1_type 105 306 -2556 2855 232 64 8 chr4 25364149 25365101 -176963246 + Charlie2 DNA MER1_type 1857 2861 -1 2561 55 0 3 chr4 25365405 25365717 -176962630 - AluY SINE Alu 0 311 1 190 346 64 0 chr4 25366639 25366717 -176961630 - L2 LINE L2 -46 3226 3144 1921 163 0 0 chr4 25366980 25367269 -176961078 + AluSx SINE Alu 1 289 -23 1011 213 92 0 chr4 25367418 25367625 -176960722 + AluJb SINE Alu 72 297 -15 1106 311 53 40 chr4 25367747 25368330 -176960017 + L2 LINE L2 1997 2587 -727 1382 181 56 98 chr4 25368364 25368774 -176959573 + MSTD LTR MaLR 4 396 0 2428 215 13 65 chr4 25368774 25369462 -176958885 + MSTD-int LTR MaLR 2 653 -1082 1281 209 73 12 chr4 25369462 25369792 -176958555 - MER4D LTR ERV1 0 903 554 1182 201 67 4 chr4 25369822 25370090 -176958257 - MER49 LTR ERV1 -638 285 1 3165 233 121 45 chr4 25370090 25371095 -176957252 + MSTD-int LTR MaLR 650 1731 -4 373 220 10 20 chr4 25371100 25371200 -176957147 + MSTD LTR MaLR 2 100 -296 * 889 169 17 34 chr4 25371199 25371302 -176957045 + MSTD LTR MaLR 210 310 -86 2363 169 26 9 chr4 25371302 25371721 -176956626 + MSTB LTR MaLR 1 426 0 889 169 17 34 chr4 25371721 25371794 -176956553 + MSTD LTR MaLR 310 383 -13 582 341 84 39 chr4 25371807 25372463 -176955884 + L2 LINE L2 2633 3313 0 293 326 11 0 chr4 25372903 25372992 -176955355 + MIR SINE MIR 54 143 -65 485 300 131 75 chr4 25373857 25374337 -176954010 - L2 LINE L2 0 3313 2807 2823 123 37 0 chr4 25374399 25374830 -176953517 - MLT2A2 LTR ERVL 0 453 7 303 317 10 10 chr4 25375003 25375107 -176953240 - L1MEc LINE L1 -6231 165 62 2333 60 0 0 chr4 25375530 25375857 -176952490 - AluY SINE Alu 0 327 1 1705 194 64 6 chr4 25376373 25376718 -176951629 - MLT1A1 LTR MaLR 0 365 1 764 264 117 18 chr4 25376795 25377347 -176951000 + L1ME4a LINE L1 5326 5928 -193 356 256 15 68 chr4 25377357 25377490 -176950857 + L1MDa LINE L1 2437 2562 -3978 1703 217 32 78 chr4 25377705 25378318 -176950029 + MER63C DNA MER1_type 11 661 -400 739 173 0 8 chr4 25378318 25378445 -176949902 - FLAM_C SINE Alu -7 126 1 1703 217 32 78 chr4 25378445 25378705 -176949642 + MER63C DNA MER1_type 661 931 0 333 261 59 14 chr4 25378831 25378908 -176949439 - L1MEc LINE L1 -919 1868 1796 1608 253 56 16 chr4 25378908 25379394 -176948953 + MLT1D LTR MaLR 1 505 0 333 261 59 14 chr4 25379394 25379533 -176948814 - L1MEc LINE L1 -991 1796 1723 24 96 0 0 chr4 25379596 25379669 -176948678 + AT_rich Low_complexity Low_complexity 1 73 0 373 263 89 38 chr4 25379685 25379898 -176948449 - L1MEc LINE L1 -5021 1405 1182 230 322 7 0 chr4 25379907 25380056 -176948291 - L1MEc LINE L1 -5085 1344 1195 290 254 24 79 chr4 25380566 25380692 -176947655 - L1MEc LINE L1 -5948 468 350 37 93 0 0 chr4 25381379 25381486 -176946861 + AT_rich Low_complexity Low_complexity 1 107 0 244 261 42 59 chr4 25381911 25382030 -176946317 - L3b LINE CR1 -351 1232 1116 892 276 13 63 chr4 25383099 25383479 -176944868 - MLT1K LTR MaLR -18 570 210 401 339 49 22 chr4 25383930 25384113 -176944234 - MIR SINE MIR -40 222 35 383 359 61 9 chr4 25384355 25384586 -176943761 + MIR SINE MIR 9 251 -11 1437 203 32 41 chr4 25384596 25384911 -176943436 - AluJo SINE Alu 0 312 1 222 196 0 36 chr4 25384916 25384972 -176943375 + (TTA)n Simple_repeat Simple_repeat 1 54 0 198 290 89 61 chr4 25385149 25385302 -176943045 + MIR SINE MIR 6 161 -70 2539 138 29 12 chr4 25385527 25385946 -176942401 + MSTB LTR MaLR 1 426 0 1259 177 35 0 chr4 25386066 25386292 -176942055 - Charlie3 DNA MER1_type -2476 234 1 2090 62 0 141 chr4 25386348 25386702 -176941645 + AluY SINE Alu 1 304 -7 2233 115 0 0 chr4 25387074 25387369 -176940978 + AluSg1 SINE Alu 1 295 -14 316 266 0 57 chr4 25387487 25387611 -176940736 + L2 LINE L2 3197 3313 0 1021 279 63 34 chr4 25387717 25388102 -176940245 - L2 LINE L2 -10 3303 2886 1967 132 0 0 chr4 25388102 25388382 -176939965 + AluSx SINE Alu 31 310 -2 1021 279 63 34 chr4 25388382 25388513 -176939834 - L2 LINE L2 -427 2886 2760 1990 156 0 6 chr4 25388638 25388952 -176939395 + AluJb SINE Alu 1 312 0 405 155 29 29 chr4 25389061 25389164 -176939183 - MER58 DNA MER1_type 0 2420 2318 232 200 0 0 chr4 25389188 25389238 -176939109 - L1MB4 LINE L1 -18 6162 6113 390 241 35 0 chr4 25389260 25389347 -176939000 - MER58 DNA MER1_type -242 99 10 217 0 61 0 chr4 25389465 25389498 -176938849 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 1625 175 40 55 chr4 25389624 25390025 -176938322 + MLT2C1 LTR ERVL 1 395 -2 1142 73 20 0 chr4 25391317 25391468 -176936879 - AluY SINE Alu -9 302 149 3591 52 0 2 chr4 25391470 25391917 -176936430 + LTR7 LTR ERV1 3 448 -2 16349 88 29 21 chr4 25391919 25394998 -176933349 + HERVH LTR ERV1 1 2995 -4718 938 113 7 0 chr4 25394977 25395127 -176933220 + HERVH LTR ERV1 3140 3290 -4423 * 3254 111 0 6 chr4 25395117 25395622 -176932725 + HERVH LTR ERV1 3492 3993 -3720 1477 113 18 4 chr4 25395624 25395853 -176932494 + HERVH LTR ERV1 4488 4719 -2994 1156 59 0 30 chr4 25395845 25396014 -176932333 + HERVH LTR ERV1 7550 7713 0 * 3601 51 0 2 chr4 25396014 25396463 -176931884 + LTR7 LTR ERV1 1 448 -2 1285 65 0 0 chr4 25396465 25396618 -176931729 - AluY SINE Alu -158 153 1 278 324 14 0 chr4 25396669 25396740 -176931607 - L2 LINE L2 -63 3209 3138 28 0 0 0 chr4 25396773 25396801 -176931546 + AT_rich Low_complexity Low_complexity 1 28 0 264 244 198 0 chr4 25397067 25397153 -176931194 - MIR SINE MIR 0 262 160 2394 100 0 0 chr4 25397598 25397909 -176930438 + AluY SINE Alu 1 311 0 416 289 74 20 chr4 25398040 25398189 -176930158 + MIR3 SINE MIR 38 194 -14 308 229 0 0 chr4 25398286 25398369 -176929978 + L1MA10 LINE L1 6241 6323 -11 1078 175 52 10 chr4 25398645 25398839 -176929508 - AluJo SINE Alu -26 286 85 222 239 0 28 chr4 25399200 25399271 -176929076 + A-rich Low_complexity Low_complexity 3 71 0 2149 86 4 4 chr4 25399316 25399622 -176928725 - AluSg SINE Alu 0 306 1 183 100 0 0 chr4 25399918 25399948 -176928399 + (A)n Simple_repeat Simple_repeat 1 30 0 269 234 48 97 chr4 25400731 25400796 -176927551 + MIR SINE MIR 68 126 -136 2511 62 0 3 chr4 25400796 25401103 -176927244 - AluY SINE Alu -4 307 2 269 234 48 97 chr4 25401103 25401161 -176927186 + MIR SINE MIR 126 185 -77 265 240 0 0 chr4 25402998 25403048 -176925299 + MIR3 SINE MIR 111 160 -48 184 263 0 0 chr4 25403267 25403305 -176925042 - MIR SINE MIR -115 147 110 189 100 60 0 chr4 25404027 25404077 -176924270 + (TA)n Simple_repeat Simple_repeat 2 54 0 251 54 27 0 chr4 25404762 25404799 -176923548 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 2767 23 0 0 chr4 25404841 25405151 -176923196 + AluYb8 SINE Alu 1 310 -8 2740 57 6 0 chr4 25405639 25405988 -176922359 + L1PA7 LINE L1 5802 6152 -2 2264 117 0 10 chr4 25406217 25406526 -176921821 - AluSx SINE Alu -6 306 1 273 260 14 0 chr4 25406649 25406722 -176921625 + MER112 DNA MER1_type 1 74 -186 2377 306 73 32 chr4 25406869 25407899 -176920448 - HERV16 LTR ERVL -2056 2940 1850 2000 147 46 12 chr4 25407899 25408225 -176920122 - MER1B DNA MER1_type 0 337 1 2377 306 73 32 chr4 25408225 25408424 -176919923 - HERV16 LTR ERVL -3146 1850 1661 1317 331 33 7 chr4 25408457 25408997 -176919350 - HERV16 LTR ERVL -3462 1534 981 371 242 0 42 chr4 25409414 25409509 -176918838 + L2 LINE L2 3221 3311 -2 217 225 0 0 chr4 25409527 25409567 -176918780 + (TATG)n Simple_repeat Simple_repeat 3 42 0 23 68 0 0 chr4 25409582 25409626 -176918721 + AT_rich Low_complexity Low_complexity 1 44 0 422 238 14 77 chr4 25409797 25409940 -176918407 - AluJo SINE Alu -178 134 1 348 362 44 33 chr4 25410166 25410601 -176917746 - L1 LINE L1 -2340 3806 3374 189 0 0 0 chr4 25410924 25410945 -176917402 + (TTA)n Simple_repeat Simple_repeat 1 21 0 269 274 221 0 chr4 25412493 25412606 -176915741 + MIR3 SINE MIR 58 195 -13 310 337 40 19 chr4 25413699 25413874 -176914473 + MIR SINE MIR 13 186 -57 682 264 88 0 chr4 25413963 25414156 -176914191 - MIR SINE MIR -31 231 22 2488 128 8 11 chr4 25414404 25414780 -176913567 + THE1C LTR MaLR 1 375 0 9422 105 35 47 chr4 25414780 25416374 -176911973 + THE1C-int LTR MaLR 1 1574 -6 2226 128 35 14 chr4 25416380 25416747 -176911600 + THE1C LTR MaLR 1 375 0 979 182 125 34 chr4 25417579 25417876 -176910471 + MER33 DNA MER1_type 1 324 0 678 316 85 44 chr4 25418302 25418922 -176909425 - L2 LINE L2 -20 3293 2584 1027 178 14 29 chr4 25419026 25419234 -176909113 - AluJo SINE Alu -23 289 85 636 321 47 65 chr4 25419466 25419914 -176908433 - L1ME4a LINE L1 -261 5860 5421 235 209 105 0 chr4 25419929 25420015 -176908332 - L1P LINE L1 -724 5427 5333 226 294 109 40 chr4 25420699 25420884 -176907463 + MIR3 SINE MIR 3 206 -56 278 341 29 34 chr4 25421044 25421249 -176907098 - Charlie8 DNA MER1_type -2212 205 2 199 403 71 44 chr4 25422752 25423047 -176905300 - L2 LINE L2 -2 3270 2968 316 292 55 22 chr4 25423329 25423540 -176904807 + MLT1K LTR MaLR 74 278 -337 353 341 104 6 chr4 25424538 25424702 -176903645 + MIR SINE MIR 52 231 -31 581 319 108 0 chr4 25425268 25425500 -176902847 + MIR SINE MIR 4 260 -2 27 81 0 0 chr4 25425607 25425669 -176902678 + AT_rich Low_complexity Low_complexity 1 62 0 1628 199 23 0 chr4 25425720 25426021 -176902326 + AluJo SINE Alu 5 312 0 383 236 9 38 chr4 25426140 25426246 -176902101 - AluJo SINE Alu -117 185 83 216 0 0 0 chr4 25426340 25426364 -176901983 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 488 236 55 112 chr4 25426517 25426864 -176901483 - MLT1I LTR MaLR -2 407 81 567 307 90 8 chr4 25426911 25427155 -176901192 + L2 LINE L2 3050 3313 0 277 319 78 7 chr4 25427314 25427455 -176900892 - MIR SINE MIR -56 206 56 216 274 78 20 chr4 25427863 25427965 -176900382 + MIR SINE MIR 127 234 -28 251 244 12 12 chr4 25428354 25428440 -176899907 + LTR67 LTR ERVL 472 557 0 540 125 47 0 chr4 25428507 25428635 -176899712 + (TAGA)n Simple_repeat Simple_repeat 3 136 0 613 278 59 5 chr4 25428635 25428822 -176899525 - MIR SINE MIR 0 262 66 193 385 13 0 chr4 25429315 25429393 -176898954 - MIR SINE MIR -179 83 5 392 298 70 0 chr4 25431315 25431429 -176896918 + MIR SINE MIR 24 145 -63 205 288 96 0 chr4 25433871 25433944 -176894403 + MIR SINE MIR 180 259 -3 214 309 53 32 chr4 25434315 25434409 -176893938 + MIR SINE MIR 19 114 -94 202 351 26 0 chr4 25434443 25434520 -176893827 + MIR SINE MIR 168 246 -16 481 306 78 23 chr4 25435418 25435637 -176892710 - MIR SINE MIR -25 237 7 648 294 37 29 chr4 25435788 25436033 -176892314 + MIR SINE MIR 12 258 -4 199 0 65 0 chr4 25437768 25437799 -176890548 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1226 114 6 0 chr4 25438004 25438180 -176890167 + L1PA8A LINE L1 5948 6124 -7 22 0 0 0 chr4 25438195 25438217 -176890130 + AT_rich Low_complexity Low_complexity 1 22 0 2096 121 40 0 chr4 25440410 25440707 -176887640 + AluSc SINE Alu 1 309 0 363 336 43 7 chr4 25441761 25441901 -176886446 + L2 LINE L2 3127 3271 -1 538 267 133 0 chr4 25442065 25442245 -176886102 + MIR SINE MIR 47 250 -12 259 301 83 0 chr4 25443162 25443295 -176885052 - MER103 DNA DNA -2 164 21 655 304 239 28 chr4 25444141 25444707 -176883640 + L2 LINE L2 2250 2934 -380 270 233 158 17 chr4 25444654 25444774 -176883573 + MIR SINE MIR 110 246 -16 * 412 374 21 11 chr4 25444831 25445018 -176883329 + L2 LINE L2 2887 3075 -238 645 342 17 0 chr4 25445092 25445326 -176883021 - MIR SINE MIR -6 256 19 852 282 95 38 chr4 25445442 25445789 -176882558 - L2 LINE L2 -454 2860 2494 322 343 48 36 chr4 25445801 25446049 -176882298 - L1ME LINE L1 -296 5825 5575 338 276 50 49 chr4 25446745 25446946 -176881401 - MIR SINE MIR -33 229 31 221 333 74 48 chr4 25447910 25448099 -176880248 + L2 LINE L2 2967 3160 -112 283 333 31 0 chr4 25448338 25448434 -176879913 + MIR SINE MIR 87 185 -77 1675 206 10 0 chr4 25448608 25448899 -176879448 - AluJo SINE Alu -18 294 1 411 326 14 0 chr4 25449184 25449325 -176879022 + MIR SINE MIR 116 258 -4 1771 188 11 0 chr4 25451257 25451608 -176876739 + L1MB7 LINE L1 5810 6164 -20 219 36 0 0 chr4 25452927 25452955 -176875392 + (TA)n Simple_repeat Simple_repeat 1 28 0 180 0 0 0 chr4 25452954 25452974 -176875373 + (CA)n Simple_repeat Simple_repeat 2 21 0 * 1701 187 90 45 chr4 25454400 25454843 -176873504 + MLT1C LTR MaLR 1 463 -4 271 340 103 47 chr4 25454965 25455412 -176872935 + ERVL LTR ERVL 4893 5364 -400 422 356 11 21 chr4 25455640 25455828 -176872519 + LTR33 LTR ERVL 1 186 -335 204 232 18 18 chr4 25456542 25456598 -176871749 + CT-rich Low_complexity Low_complexity 3 58 0 2023 157 0 0 chr4 25457051 25457356 -176870991 + AluSx SINE Alu 1 305 -7 2833 235 47 34 chr4 25458261 25459171 -176869176 - L1ME1 LINE L1 -7 6159 5239 324 237 0 41 chr4 25459406 25459503 -176868844 - L1MC4 LINE L1 -1337 6705 6613 * 328 284 23 0 chr4 25459416 25459504 -176868843 + L1MC4 LINE L1 6616 6705 -1337 471 314 138 53 chr4 25459897 25460715 -176867632 + L2 LINE L2 1345 2232 -1082 202 255 0 0 chr4 25460977 25461028 -176867319 - L2 LINE L2 0 3313 3263 366 325 20 60 chr4 25461281 25461533 -176866814 + L2 LINE L2 2519 2760 -554 259 336 44 35 chr4 25461990 25462103 -176866244 + L2 LINE L2 3159 3272 0 485 410 102 17 chr4 25462193 25462595 -176865752 - L2 LINE L2 -10 3262 2827 225 283 151 9 chr4 25462643 25462749 -176865598 - L2 LINE L2 -604 2710 2590 189 0 0 0 chr4 25463388 25463409 -176864938 + (A)n Simple_repeat Simple_repeat 1 21 0 506 355 53 48 chr4 25463843 25464299 -176864048 + L2 LINE L2 2500 2957 -357 370 275 25 0 chr4 25464431 25464511 -176863836 + L2 LINE L2 3141 3222 -50 252 59 0 0 chr4 25464553 25464587 -176863760 + (TGGA)n Simple_repeat Simple_repeat 1 34 0 2396 133 8 0 chr4 25464607 25464968 -176863379 - THE1B LTR MaLR 0 364 1 3708 97 19 2 chr4 25464968 25465494 -176862853 - THE1B-int LTR MaLR 0 1580 1046 11525 96 8 6 chr4 25465497 25467456 -176860891 + HERVL-A2 LTR ERVL 3742 5757 -7 1942 169 37 33 chr4 25467456 25468001 -176860346 + MLT2A2 LTR ERVL 1 552 -2 347 230 32 79 chr4 25468059 25468185 -176860162 + MIR SINE MIR 123 242 -20 22 0 0 0 chr4 25468252 25468274 -176860073 + AT_rich Low_complexity Low_complexity 1 22 0 2404 77 0 6 chr4 25468806 25469117 -176859230 - AluY SINE Alu -2 309 1 2309 100 0 16 chr4 25470123 25470433 -176857914 - AluSx SINE Alu -7 305 1 328 233 58 39 chr4 25471021 25471124 -176857223 + MLT1L LTR MaLR 501 605 -10 386 248 46 46 chr4 25472420 25472573 -176855774 - L2 LINE L2 0 3313 3161 2398 90 3 0 chr4 25472985 25473296 -176855051 - AluSp SINE Alu -1 312 1 230 0 33 0 chr4 25473386 25473416 -176854931 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 27 49 0 0 chr4 25474654 25474695 -176853652 + AT_rich Low_complexity Low_complexity 1 41 0 263 333 86 43 chr4 25474701 25474887 -176853460 - MIR SINE MIR -12 250 57 193 258 268 10 chr4 25475084 25475181 -176853166 + L2 LINE L2 3136 3257 -15 311 208 0 10 chr4 25476963 25477059 -176851288 + CT-rich Low_complexity Low_complexity 2 96 0 530 209 38 0 chr4 25477509 25477614 -176850733 - MIR SINE MIR -105 157 49 1489 166 8 4 chr4 25478237 25478472 -176849875 + MER46A DNA MER2_type 1 236 0 271 293 27 0 chr4 25478491 25478566 -176849781 + L2 LINE L2 3181 3257 -15 412 350 93 22 chr4 25479159 25479385 -176848962 + MIR SINE MIR 21 262 0 248 196 18 0 chr4 25481035 25481091 -176847256 + (TTCA)n Simple_repeat Simple_repeat 1 57 0 199 324 67 9 chr4 25481323 25481428 -176846919 - L2 LINE L2 -12 3260 3150 465 333 91 9 chr4 25481505 25481724 -176846623 - MIR SINE MIR -12 250 14 238 380 63 0 chr4 25481749 25481891 -176846456 - L2 LINE L2 -284 2988 2838 359 330 100 55 chr4 25482093 25482605 -176845742 - L2 LINE L2 -753 2561 2027 388 329 133 7 chr4 25482628 25482771 -176845576 - MIR3 SINE MIR -12 196 36 1461 220 3 10 chr4 25482873 25483178 -176845169 - AluJo SINE Alu -9 303 1 201 253 53 32 chr4 25483325 25483420 -176844927 - MIR SINE MIR -89 173 77 822 114 0 0 chr4 25483644 25483758 -176844589 - AluSg/x SINE Alu -8 302 189 2033 38 0 61 chr4 25483758 25484047 -176844300 + AluY SINE Alu 37 309 0 250 252 194 15 chr4 25485133 25485280 -176843067 + MIR SINE MIR 20 187 -62 339 274 6 97 chr4 25485395 25485577 -176842770 + MER5A DNA MER1_type 6 176 -5 543 217 89 45 chr4 25486018 25486175 -176842172 - MIR SINE MIR -51 211 48 643 234 0 0 chr4 25486311 25486439 -176841908 - FLAM_A SINE Alu -5 128 1 231 36 0 0 chr4 25486488 25486516 -176841831 + (T)n Simple_repeat Simple_repeat 1 28 0 424 313 61 0 chr4 25486599 25486730 -176841617 - L3 LINE CR1 -4 1573 1435 311 221 47 35 chr4 25487419 25487505 -176840842 + L2 LINE L2 3186 3272 0 1376 249 63 40 chr4 25488202 25488439 -176839908 - L2 LINE L2 0 3313 3083 2257 87 14 0 chr4 25488439 25488725 -176839622 - AluSc SINE Alu -19 290 1 1376 249 63 40 chr4 25488725 25488961 -176839386 - L2 LINE L2 -230 3083 2829 364 296 94 25 chr4 25488991 25489150 -176839197 + L3 LINE CR1 1407 1576 -1 1686 142 127 0 chr4 25490006 25490266 -176838081 - AluSx SINE Alu -8 294 2 5456 186 36 11 chr4 25490281 25491187 -176837160 - L1MC3 LINE L1 0 7785 6846 384 71 0 0 chr4 25491187 25491243 -176837104 + (TG)n Simple_repeat Simple_repeat 1 56 0 5456 186 36 11 chr4 25491243 25491425 -176836922 - L1MC3 LINE L1 -939 6846 6670 287 173 36 100 chr4 25491515 25491605 -176836742 + MIR SINE MIR 51 134 -74 15786 130 14 38 chr4 25491605 25491800 -176836547 - Tigger1 DNA MER2_type -1 2417 2219 1822 167 6 22 chr4 25491800 25492117 -176836230 + AluSx SINE Alu 1 312 0 15786 130 14 38 chr4 25492117 25494396 -176833951 - Tigger1 DNA MER2_type -199 2219 1 287 173 36 100 chr4 25494396 25494415 -176833932 + MIR SINE MIR 134 153 -55 40 0 0 0 chr4 25494634 25494674 -176833673 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr4 25494728 25494751 -176833596 + AT_rich Low_complexity Low_complexity 1 23 0 209 216 0 0 chr4 25495272 25495309 -176833038 + (TATATG)n Simple_repeat Simple_repeat 6 42 0 2162 119 0 7 chr4 25496961 25497263 -176831084 + AluSq SINE Alu 1 300 -13 229 320 105 29 chr4 25497290 25497462 -176830885 - MIR SINE MIR -50 212 28 216 0 0 0 chr4 25497462 25497486 -176830861 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 3522 83 21 4 chr4 25497486 25497841 -176830506 - L1PB1 LINE L1 -6 6145 5779 468 0 0 0 chr4 25497841 25497893 -176830454 + (TG)n Simple_repeat Simple_repeat 2 53 0 3522 83 21 4 chr4 25497893 25498009 -176830338 - L1PB1 LINE L1 -372 5779 5666 217 373 0 13 chr4 25498011 25498086 -176830261 + L2 LINE L2 3160 3233 -39 300 283 46 101 chr4 25498250 25498469 -176829878 - MIR SINE MIR -36 226 20 224 256 182 58 chr4 25499074 25499316 -176829031 - L2 LINE L2 -17 3296 3025 356 206 167 10 chr4 25499543 25499645 -176828702 + L2 LINE L2 3191 3308 -5 444 295 66 53 chr4 25500238 25500346 -176828001 + MIR SINE MIR 5 110 -152 2261 106 3 0 chr4 25500346 25500648 -176827699 + AluSg SINE Alu 1 303 -7 444 295 66 53 chr4 25500648 25500783 -176827564 + MIR SINE MIR 110 251 -11 579 222 78 30 chr4 25500799 25500966 -176827381 - MER104 DNA MER2_type -2 178 4 198 419 41 12 chr4 25501087 25501259 -176827088 - L3b LINE CR1 -154 1429 1253 745 304 144 59 chr4 25501388 25502470 -176825877 - L2 LINE L2 -8 3305 2119 458 308 0 0 chr4 25502691 25502808 -176825539 - MIR SINE MIR -142 120 4 324 305 124 19 chr4 25503661 25503766 -176824581 + MIR SINE MIR 30 145 -63 552 214 18 18 chr4 25504011 25504123 -176824224 - MER81 DNA DNA -2 112 1 185 245 41 0 chr4 25504157 25504206 -176824141 + L2 LINE L2 3165 3215 -98 1563 169 88 0 chr4 25504242 25504514 -176823833 - AluJb SINE Alu -16 296 1 235 330 59 17 chr4 25504734 25504852 -176823495 - MIR3 SINE MIR -81 127 5 214 343 0 0 chr4 25505883 25505956 -176822391 + CT-rich Low_complexity Low_complexity 1 73 0 546 198 97 123 chr4 25508045 25508272 -176820075 + MIR SINE MIR 10 230 -32 1608 203 33 15 chr4 25508304 25508634 -176819713 + MLT1A2 LTR MaLR 1 336 -38 399 323 23 8 chr4 25509010 25509143 -176819204 + MIR SINE MIR 6 140 -122 185 262 155 24 chr4 25511289 25511373 -176816974 + L2 LINE L2 3201 3295 -18 1244 132 24 5 chr4 25511886 25512091 -176816256 - AluSg/x SINE Alu -5 307 99 679 300 86 4 chr4 25512821 25513078 -176815269 - L2 LINE L2 -12 3301 3024 392 256 44 19 chr4 25513684 25513844 -176814503 - MER103 DNA DNA -2 164 1 406 204 259 19 chr4 25514563 25514725 -176813622 + MIR SINE MIR 32 232 -30 306 0 0 0 chr4 25514742 25514776 -176813571 + (CA)n Simple_repeat Simple_repeat 2 35 0 227 343 15 0 chr4 25515367 25515434 -176812913 + L2 LINE L2 2986 3053 -219 197 396 101 0 chr4 25515703 25515852 -176812495 + L2 LINE L2 3109 3272 0 247 330 116 9 chr4 25516040 25516152 -176812195 + L2 LINE L2 3144 3267 -5 372 86 43 0 chr4 25516197 25516267 -176812080 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 396 291 157 22 chr4 25516379 25516647 -176811700 + L2 LINE L2 3005 3308 -5 206 258 0 76 chr4 25516895 25516961 -176811386 + L2 LINE L2 2877 2937 -377 758 281 62 57 chr4 25517019 25517158 -176811189 + L2 LINE L2 2920 3057 -256 2048 141 0 3 chr4 25517158 25517464 -176810883 - AluSx SINE Alu -7 305 1 758 281 62 57 chr4 25517464 25517712 -176810635 + L2 LINE L2 3057 3309 -4 2071 63 4 4 chr4 25520465 25520717 -176807630 + AluY SINE Alu 44 295 -16 2420 129 17 50 chr4 25522438 25522722 -176805625 - MLT1B LTR MaLR 0 390 121 2340 101 0 0 chr4 25522722 25523019 -176805328 - AluSg SINE Alu -11 299 3 2420 129 17 50 chr4 25523019 25523137 -176805210 - MLT1B LTR MaLR -269 121 1 275 260 187 0 chr4 25523144 25523267 -176805080 - MIR SINE MIR -96 166 21 368 275 108 30 chr4 25527640 25527807 -176800540 + MIR SINE MIR 63 242 -20 342 331 203 19 chr4 25528652 25529012 -176799335 - L2 LINE L2 -1 3271 2846 243 276 0 0 chr4 25529125 25529183 -176799164 - MIR3 SINE MIR -54 154 97 319 264 7 107 chr4 25529285 25529425 -176798922 + MIR SINE MIR 96 221 -41 598 293 63 9 chr4 25529455 25529677 -176798670 + MIR SINE MIR 17 250 -12 197 105 0 26 chr4 25529685 25529698 -176798649 + (TTA)n Simple_repeat Simple_repeat 1 13 -24 5239 40 0 5 chr4 25529698 25530304 -176798043 - L1PA4 LINE L1 -5 6150 5548 197 105 0 26 chr4 25530304 25530328 -176798019 + (TTA)n Simple_repeat Simple_repeat 13 37 0 441 0 0 0 chr4 25531274 25531323 -176797024 + (CA)n Simple_repeat Simple_repeat 1 49 0 630 234 43 72 chr4 25531440 25531649 -176796698 - MIR SINE MIR -1 261 59 203 300 12 12 chr4 25532249 25532329 -176796018 + (TA)n Simple_repeat Simple_repeat 1 80 0 324 0 0 0 chr4 25533551 25533587 -176794760 + (TG)n Simple_repeat Simple_repeat 1 36 0 493 241 35 65 chr4 25533691 25533861 -176794486 + MIR SINE MIR 28 192 -70 230 252 84 76 chr4 25535942 25536073 -176792274 - MER102a DNA MER1_type -6 324 193 183 80 0 0 chr4 25536817 25536842 -176791505 + (CA)n Simple_repeat Simple_repeat 1 25 0 433 300 111 76 chr4 25536948 25537318 -176791029 + L2 LINE L2 2884 3266 -6 225 0 0 0 chr4 25537393 25537418 -176790929 + (TC)n Simple_repeat Simple_repeat 2 26 0 189 0 0 0 chr4 25537417 25537438 -176790909 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 399 113 0 0 chr4 25537439 25537501 -176790846 + (CA)n Simple_repeat Simple_repeat 1 62 0 370 224 153 0 chr4 25538737 25538835 -176789512 - MIR SINE MIR -77 185 73 2214 151 31 14 chr4 25538913 25539271 -176789076 - MLT1A1 LTR MaLR 0 365 2 592 286 49 16 chr4 25539271 25539456 -176788891 + MIR SINE MIR 68 258 -4 217 279 215 38 chr4 25539624 25539782 -176788565 + MIR SINE MIR 27 212 -50 22 56 0 0 chr4 25540204 25540240 -176788107 + AT_rich Low_complexity Low_complexity 1 36 0 426 330 67 21 chr4 25542470 25542664 -176785683 - MIR SINE MIR -25 237 35 204 115 0 58 chr4 25542825 25542877 -176785470 + (TTTTTG)n Simple_repeat Simple_repeat 2 50 0 335 296 115 46 chr4 25543147 25543451 -176784896 + L2 LINE L2 2889 3213 -100 291 171 79 26 chr4 25543551 25543627 -176784720 + L2 LINE L2 3233 3312 -1 908 242 88 75 chr4 25545551 25545709 -176782638 - MLT1L LTR MaLR -5 610 456 2173 125 0 0 chr4 25545709 25546013 -176782334 - AluSx SINE Alu -8 304 1 908 242 88 75 chr4 25546013 25546309 -176782038 - MLT1L LTR MaLR -159 456 150 309 26 0 0 chr4 25546536 25546574 -176781773 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 700 257 12 82 chr4 25547452 25547709 -176780638 + MER102b DNA MER1_type 103 341 0 433 335 30 26 chr4 25548890 25549135 -176779212 + MIR SINE MIR 4 245 -17 606 233 84 101 chr4 25550337 25550514 -176777833 - L2 LINE L2 0 3313 3141 378 0 0 0 chr4 25550514 25550556 -176777791 + (TG)n Simple_repeat Simple_repeat 2 43 0 606 233 84 101 chr4 25550556 25550674 -176777673 - L2 LINE L2 -172 3141 3023 469 0 33 0 chr4 25550797 25550858 -176777489 + (TG)n Simple_repeat Simple_repeat 1 63 0 508 280 43 33 chr4 25551133 25551344 -176777003 + MIR SINE MIR 42 254 -8 29 0 0 0 chr4 25551470 25551499 -176776848 + AT_rich Low_complexity Low_complexity 1 29 0 220 322 99 13 chr4 25551882 25552034 -176776313 + L2 LINE L2 1869 2033 -1281 209 327 38 44 chr4 25552046 25552205 -176776142 + L2 LINE L2 2684 2841 -473 1042 201 300 43 chr4 25552856 25553293 -176775054 - MLT1H LTR MaLR 0 549 1 390 250 23 55 chr4 25554211 25554339 -176774008 + MER5A DNA MER1_type 13 136 -53 571 251 69 17 chr4 25554801 25554976 -176773371 - MIR SINE MIR -12 250 67 189 263 70 18 chr4 25555351 25555408 -176772939 + L2 LINE L2 3213 3272 0 289 323 98 30 chr4 25556597 25556761 -176771586 + MIR SINE MIR 14 188 -74 287 340 48 0 chr4 25557942 25558045 -176770302 + L2 LINE L2 3164 3271 -1 753 184 0 0 chr4 25558241 25558382 -176769965 - L1MA4A LINE L1 -11 6292 6152 2509 117 104 15 chr4 25558413 25558806 -176769541 - MSTA LTR MaLR 0 428 1 281 122 14 149 chr4 25559688 25559733 -176768614 - MER5A DNA MER1_type -93 96 63 1868 33 0 5 chr4 25559733 25559945 -176768402 - L1PA5 LINE L1 -13 6141 5931 281 122 14 149 chr4 25559945 25559973 -176768374 - MER5A DNA MER1_type -126 63 33 198 0 0 0 chr4 25560545 25560567 -176767780 + (T)n Simple_repeat Simple_repeat 1 22 0 920 212 0 0 chr4 25562756 25562907 -176765440 - FRAM SINE Alu -15 151 1 1982 155 45 79 chr4 25563332 25563494 -176764853 - MLT1C LTR MaLR -4 463 297 2032 130 179 16 chr4 25563494 25563862 -176764485 - MSTA LTR MaLR 0 428 1 1173 241 77 31 chr4 25563866 25564215 -176764132 + MLT1A1 LTR MaLR 1 365 0 1982 155 45 79 chr4 25564215 25564431 -176763916 - MLT1C LTR MaLR -173 294 94 2236 104 3 23 chr4 25564431 25564739 -176763608 + AluSx SINE Alu 1 302 -10 1982 155 45 79 chr4 25564739 25564798 -176763549 - MLT1C LTR MaLR -373 94 35 335 315 94 47 chr4 25565719 25565954 -176762393 - MLT1I LTR MaLR -154 255 10 463 302 39 0 chr4 25565977 25566106 -176762241 - MIR SINE MIR -116 146 13 220 345 97 9 chr4 25566514 25566627 -176761720 + L3 LINE CR1 893 1015 -562 * 379 301 98 16 chr4 25566613 25566837 -176761510 + MIR SINE MIR 20 256 -6 621 336 114 33 chr4 25566881 25567277 -176761070 + L3 LINE CR1 1016 1443 -134 351 229 125 31 chr4 25567368 25567464 -176760883 + MER5B DNA MER1_type 3 107 -71 282 95 0 0 chr4 25567884 25567926 -176760421 + (TG)n Simple_repeat Simple_repeat 2 43 0 2544 48 7 7 chr4 25570045 25570374 -176757973 + AluY SINE Alu 1 329 0 441 257 29 0 chr4 25570853 25570958 -176757389 - MIR SINE MIR -74 188 81 407 335 157 0 chr4 25571183 25571380 -176756967 - MIR SINE MIR -13 249 22 210 171 0 0 chr4 25571421 25571462 -176756885 + CT-rich Low_complexity Low_complexity 2 42 0 1681 169 6 47 chr4 25571468 25571788 -176756559 - AluJo SINE Alu -5 307 1 221 303 92 0 chr4 25572175 25572251 -176756096 + MIR SINE MIR 69 151 -57 779 260 43 17 chr4 25572835 25573066 -176755281 + MIR SINE MIR 5 241 -21 237 293 137 72 chr4 25573289 25573552 -176754795 - L2 LINE L2 -176 3096 2817 423 250 169 22 chr4 25573846 25574030 -176754317 - MIR SINE MIR -21 241 31 251 294 203 0 chr4 25574360 25574469 -176753878 + MIR SINE MIR 33 164 -59 471 315 92 27 chr4 25575274 25575566 -176752781 - L3b LINE CR1 -156 1427 1117 729 261 5 5 chr4 25575787 25575975 -176752372 + MIR SINE MIR 70 257 -5 208 311 27 14 chr4 25576669 25576743 -176751604 + L2 LINE L2 3168 3242 -30 213 258 31 78 chr4 25577862 25577990 -176750357 - MIR SINE MIR -50 212 91 630 299 39 13 chr4 25579002 25579236 -176749111 + MIR SINE MIR 23 262 0 236 245 0 38 chr4 25579246 25579299 -176749048 + L1ME LINE L1 4052 4102 -2044 373 321 55 43 chr4 25579332 25579983 -176748364 + L1ME LINE L1 4175 4833 -1313 432 268 97 38 chr4 25580361 25580853 -176747494 + L1ME LINE L1 5270 5794 -327 3533 271 122 52 chr4 25580981 25582182 -176746165 + HAL1 LINE L1 53 1168 -1339 432 0 0 0 chr4 25582182 25582230 -176746117 + (CA)n Simple_repeat Simple_repeat 2 49 0 3533 271 122 52 chr4 25582230 25583121 -176745226 + HAL1 LINE L1 1168 2293 -214 549 258 90 6 chr4 25583519 25583697 -176744650 + MIR SINE MIR 48 240 -22 2812 88 14 8 chr4 25583974 25584336 -176744011 - THE1B LTR MaLR 0 364 1 351 165 24 24 chr4 25585313 25585398 -176742949 + L1MA9 LINE L1 6228 6312 0 231 180 164 0 chr4 25585485 25585546 -176742801 - MIR SINE MIR -72 190 120 269 232 53 32 chr4 25585550 25585645 -176742702 - MIR SINE MIR -99 163 67 498 232 15 69 chr4 25586015 25586197 -176742150 + MIR SINE MIR 5 174 -65 195 162 0 0 chr4 25586222 25586259 -176742088 + (CAT)n Simple_repeat Simple_repeat 1 37 0 2031 148 0 7 chr4 25586513 25586823 -176741524 + AluSc SINE Alu 1 308 -1 28 29 0 0 chr4 25587222 25587257 -176741090 + AT_rich Low_complexity Low_complexity 1 35 0 97 25 0 0 chr4 25587636 25587754 -176740593 + AT_rich Low_complexity Low_complexity 1 118 0 246 357 58 13 chr4 25587959 25588113 -176740234 - MIR3 SINE MIR -3 205 45 1670 215 18 3 chr4 25588853 25589183 -176739164 - MER58B DNA MER1_type -1 340 6 221 290 60 50 chr4 25589827 25589927 -176738420 - MIR3 SINE MIR -98 110 10 573 308 86 5 chr4 25590624 25590822 -176737525 + MIR SINE MIR 40 253 -9 320 303 13 0 chr4 25591384 25591460 -176736887 + L2 LINE L2 3182 3258 -14 292 330 135 42 chr4 25591488 25591776 -176736571 + L2 LINE L2 2913 3227 -45 228 111 0 0 chr4 25591826 25591862 -176736485 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 36 0 0 chr4 25592617 25592645 -176735702 + AT_rich Low_complexity Low_complexity 1 28 0 257 74 0 56 chr4 25592983 25593037 -176735310 + (A)n Simple_repeat Simple_repeat 1 51 0 280 353 7 13 chr4 25594068 25594221 -176734126 + MIR SINE MIR 105 256 -6 362 230 43 76 chr4 25596255 25596426 -176731921 - MIR SINE MIR -47 215 49 232 286 62 54 chr4 25597207 25597319 -176731028 - L2 LINE L2 -42 3230 3118 205 352 79 48 chr4 25598678 25598905 -176729442 + MIR SINE MIR 7 240 -22 * 414 231 63 28 chr4 25598901 25599044 -176729303 + MIR SINE MIR 115 262 0 2023 94 8 0 chr4 25600925 25601190 -176727157 - AluSx SINE Alu -45 267 1 183 286 20 0 chr4 25602273 25602322 -176726025 - MIR SINE MIR -9 253 204 3909 170 10 16 chr4 25602400 25603107 -176725240 - L1MB3 LINE L1 -39 6144 5442 437 267 19 0 chr4 25603124 25603229 -176725118 - MIR SINE MIR -80 182 76 377 288 34 8 chr4 25603706 25603824 -176724523 + MIR SINE MIR 48 168 -94 705 298 30 25 chr4 25604704 25604939 -176723408 + MIR SINE MIR 1 236 -26 211 280 0 0 chr4 25604948 25604998 -176723349 + (CTA)n Simple_repeat Simple_repeat 1 50 0 659 241 108 22 chr4 25606017 25606249 -176722098 - MIR SINE MIR 0 262 11 2481 67 0 25 chr4 25606684 25607000 -176721347 + AluY SINE Alu 1 308 -3 2286 113 0 0 chr4 25607200 25607500 -176720847 - AluSx SINE Alu -12 300 1 218 191 0 0 chr4 25607579 25607621 -176720726 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 632 301 22 26 chr4 25608233 25608462 -176719885 + MIR SINE MIR 35 262 0 2411 88 0 3 chr4 25608642 25608949 -176719398 - AluY SINE Alu -5 306 1 2325 93 0 7 chr4 25609359 25609660 -176718687 + AluSg SINE Alu 1 299 -11 228 204 0 82 chr4 25610529 25610627 -176717720 - L1MC4 LINE L1 -1339 6703 6614 210 118 0 0 chr4 25610628 25610662 -176717685 + (TA)n Simple_repeat Simple_repeat 1 34 0 222 91 0 0 chr4 25610693 25610726 -176717621 + (CA)n Simple_repeat Simple_repeat 2 34 0 219 279 33 0 chr4 25610898 25610959 -176717388 - MIR SINE MIR -111 151 89 897 186 37 28 chr4 25612205 25612420 -176715927 + MIR SINE MIR 15 231 -31 468 257 120 6 chr4 25612441 25612624 -176715723 - L2 LINE L2 -2 3311 3108 1074 289 102 15 chr4 25612817 25613218 -176715129 - MLT1J2 LTR MaLR -2 448 13 1896 201 77 29 chr4 25614042 25614485 -176713862 + MLT1C LTR MaLR 1 464 -3 32 43 0 0 chr4 25614575 25614621 -176713726 + AT_rich Low_complexity Low_complexity 1 46 0 1679 272 63 2 chr4 25618276 25618765 -176709582 - LTR33 LTR ERVL -2 519 1 240 167 0 0 chr4 25619961 25620009 -176708338 + (ATG)n Simple_repeat Simple_repeat 1 48 0 210 274 16 16 chr4 25620135 25620197 -176708150 - MIR SINE MIR -109 153 92 264 309 25 12 chr4 25620319 25620400 -176707947 + MIR3 SINE MIR 111 192 -16 601 321 5 16 chr4 25621703 25621890 -176706457 + MER91A DNA MER1_type 9 193 -3 326 346 52 15 chr4 25621912 25622048 -176706299 - L2 LINE L2 -10 3262 3122 390 257 87 60 chr4 25622560 25622743 -176705604 - MIR SINE MIR -67 195 8 184 344 0 0 chr4 25622913 25622974 -176705373 - MIR SINE MIR -2 260 200 1760 274 28 15 chr4 25623062 25623667 -176704680 - L1ME3 LINE L1 -111 6051 5439 980 190 58 0 chr4 25623695 25623869 -176704478 - MIR SINE MIR -73 189 6 22 0 0 0 chr4 25624104 25624126 -176704221 + AT_rich Low_complexity Low_complexity 1 22 0 2049 138 0 19 chr4 25624279 25624597 -176703750 - AluSx SINE Alu 0 312 1 26 0 0 0 chr4 25624639 25624665 -176703682 + AT_rich Low_complexity Low_complexity 1 26 0 969 238 60 43 chr4 25625178 25625598 -176702749 - L1MC5 LINE L1 -80 7881 7455 210 91 0 0 chr4 25626419 25626452 -176701895 + (TG)n Simple_repeat Simple_repeat 2 34 0 792 277 42 47 chr4 25626525 25626762 -176701585 - MIR SINE MIR -27 235 5 215 271 119 25 chr4 25626821 25626939 -176701408 + MIR SINE MIR 70 198 -64 330 278 99 60 chr4 25626984 25627135 -176701212 - L2 LINE L2 0 3272 3116 222 253 0 67 chr4 25627173 25627248 -176701099 + L2 LINE L2 3202 3271 -1 321 296 56 97 chr4 25627448 25627715 -176700632 + MIR SINE MIR 1 256 -6 197 62 0 31 chr4 25627716 25627748 -176700599 + (TTA)n Simple_repeat Simple_repeat 3 33 0 383 285 93 13 chr4 25627857 25628008 -176700339 + MIR3 SINE MIR 36 198 -10 472 215 50 0 chr4 25628153 25628274 -176700073 + MER20 DNA MER1_type 84 210 -9 272 298 19 48 chr4 25628657 25628761 -176699586 - L2 LINE L2 0 3272 3172 219 279 186 12 chr4 25628899 25628985 -176699362 + L2 LINE L2 3172 3272 0 290 322 81 13 chr4 25630240 25630389 -176697958 - MIR SINE MIR -56 206 48 632 213 170 32 chr4 25630832 25631085 -176697262 - MER5C DNA MER1_type -3 321 34 351 293 75 0 chr4 25631141 25631274 -176697073 - MIR SINE MIR -110 152 10 716 304 13 22 chr4 25631740 25631967 -176696380 + MIR SINE MIR 28 252 -10 191 375 8 33 chr4 25632174 25632294 -176696053 - MIR SINE MIR -112 150 34 658 286 80 9 chr4 25632338 25632562 -176695785 - MIR SINE MIR 0 262 23 375 73 0 0 chr4 25632603 25632658 -176695689 + (CA)n Simple_repeat Simple_repeat 1 55 0 300 330 54 9 chr4 25632691 25632803 -176695544 + MIR3 SINE MIR 89 205 -3 208 326 95 0 chr4 25633349 25633444 -176694903 - MIR3 SINE MIR -17 191 88 536 309 43 0 chr4 25633614 25633844 -176694503 - Charlie8 DNA MER1_type -2131 286 47 358 313 188 14 chr4 25635462 25635670 -176692677 + MIR SINE MIR 12 255 -7 367 232 10 10 chr4 25636962 25637061 -176691286 - MLT1I LTR MaLR -7 402 304 249 298 37 78 chr4 25637300 25637518 -176690829 - L2 LINE L2 -26 3287 3079 647 238 41 17 chr4 25638058 25638230 -176690117 - MIR SINE MIR -24 238 63 325 285 194 7 chr4 25640431 25640575 -176687772 + MIR SINE MIR 89 259 -3 343 269 167 21 chr4 25640598 25640832 -176687515 + L1ME4a LINE L1 5636 5903 -218 312 298 159 31 chr4 25642597 25642855 -176685492 + MER102b DNA MER1_type 51 341 0 187 254 0 73 chr4 25643352 25643407 -176684940 + L2 LINE L2 3262 3312 -1 266 260 0 26 chr4 25644616 25644693 -176683654 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 226 218 0 18 chr4 25644696 25644751 -176683596 - MER116 DNA Mariner -23 57 4 2434 206 96 5 chr4 25644868 25645461 -176682886 + MLT1E1 LTR MaLR 8 654 0 25 0 0 0 chr4 25646624 25646649 -176681698 + AT_rich Low_complexity Low_complexity 1 25 0 234 353 47 0 chr4 25646676 25646761 -176681586 + L2 LINE L2 3157 3245 -27 203 250 0 0 chr4 25648445 25648493 -176679854 + (TG)n Simple_repeat Simple_repeat 1 48 0 446 261 134 13 chr4 25649255 25649412 -176678935 + L2 LINE L2 3138 3313 0 541 277 45 55 chr4 25649547 25649767 -176678580 - MIR SINE MIR -14 248 31 21 0 0 0 chr4 25650703 25650724 -176677623 + AT_rich Low_complexity Low_complexity 1 21 0 407 309 179 45 chr4 25652137 25652583 -176675764 + L2 LINE L2 2807 3312 -1 209 305 0 0 chr4 25652583 25652642 -176675705 + GA-rich Low_complexity Low_complexity 2 60 0 684 183 6 72 chr4 25652713 25652893 -176675454 - MER104 DNA Tc2 -3 177 10 2133 131 7 0 chr4 25653506 25653841 -176674506 + AluSx SINE Alu 1 337 0 230 296 86 0 chr4 25653856 25653937 -176674410 + MIR SINE MIR 38 125 -83 300 337 64 45 chr4 25654304 25654506 -176673841 - MIR3 SINE MIR 0 208 3 220 228 53 18 chr4 25655006 25655063 -176673284 - MIR SINE MIR -168 94 36 641 289 97 36 chr4 25655978 25656324 -176672023 + L2 LINE L2 2662 3021 -292 330 336 22 29 chr4 25656607 25656744 -176671603 + MIR SINE MIR 16 151 -57 1932 112 0 4 chr4 25657429 25657687 -176670660 + AluSc SINE Alu 1 257 -52 261 0 0 0 chr4 25657728 25657757 -176670590 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 270 0 0 0 chr4 25657756 25657786 -176670561 + (TG)n Simple_repeat Simple_repeat 1 30 0 290 195 13 0 chr4 25659737 25659814 -176668533 + GA-rich Low_complexity Low_complexity 2 79 0 180 0 0 0 chr4 25660321 25660341 -176668006 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1869 133 41 3 chr4 25662063 25662357 -176665990 + AluSx SINE Alu 1 305 -7 564 253 48 16 chr4 25662772 25662958 -176665389 - MER117 DNA MER1_type -4 193 2 796 230 85 0 chr4 25662969 25663169 -176665178 + MER58A DNA MER1_type 3 219 -5 231 295 105 75 chr4 25664023 25664223 -176664124 - L2 LINE L2 -111 3161 2956 499 239 61 49 chr4 25666131 25666294 -176662053 + MIR SINE MIR 8 172 -90 235 274 16 0 chr4 25666587 25666649 -176661698 + MIR SINE MIR 190 252 -10 518 341 27 27 chr4 25667255 25667478 -176660869 + MIR SINE MIR 14 236 -26 216 177 0 48 chr4 25667484 25667608 -176660739 + (TAA)n Simple_repeat Simple_repeat 2 119 0 349 356 23 5 chr4 25668070 25668287 -176660060 + MIR SINE MIR 20 241 -21 333 164 57 0 chr4 25669725 25669884 -176658463 + (TA)n Simple_repeat Simple_repeat 2 169 0 219 241 194 74 chr4 25670164 25670272 -176658075 - L2 LINE L2 0 3313 3193 24 0 0 0 chr4 25670310 25670334 -176658013 + AT_rich Low_complexity Low_complexity 1 24 0 334 83 70 38 chr4 25670841 25670998 -176657349 + (TA)n Simple_repeat Simple_repeat 1 162 0 201 283 0 0 chr4 25671075 25671128 -176657219 + (TA)n Simple_repeat Simple_repeat 1 53 0 5232 61 12 1 chr4 25671390 25672064 -176656283 + L1PA7 LINE L1 5473 6153 -1 317 347 51 23 chr4 25672271 25672487 -176655860 - L2 LINE L2 -214 3058 2837 388 335 38 32 chr4 25673091 25673276 -176655071 + MIR SINE MIR 35 220 -42 423 320 17 29 chr4 25673771 25673943 -176654404 - MIR3 SINE MIR -1 207 38 21 0 0 0 chr4 25674366 25674387 -176653960 + AT_rich Low_complexity Low_complexity 1 21 0 477 285 92 14 chr4 25674643 25674850 -176653497 - L3b LINE CR1 -238 1345 1123 560 284 21 7 chr4 25674986 25675128 -176653219 + MIR SINE MIR 25 167 -62 215 154 0 19 chr4 25676120 25676172 -176652175 + CT-rich Low_complexity Low_complexity 2 52 0 199 326 58 0 chr4 25676617 25676703 -176651644 - MIR SINE MIR -48 214 124 1047 231 0 14 chr4 25676748 25676969 -176651378 - MER58A DNA MER1_type 0 224 7 478 332 47 37 chr4 25676986 25677200 -176651147 - MIR SINE MIR 0 262 47 852 288 118 19 chr4 25677229 25677646 -176650701 + MLT1J LTR MaLR 11 468 -43 239 330 42 17 chr4 25678625 25678743 -176649604 + MIR SINE MIR 92 212 -50 352 288 96 16 chr4 25678930 25679055 -176649292 + LTR67 LTR ERVL 71 205 -352 476 303 65 11 chr4 25679093 25679354 -176648993 + LTR67 LTR ERVL 277 551 -6 194 341 43 22 chr4 25679458 25679596 -176648751 - L2 LINE L2 -455 2859 2719 216 0 0 0 chr4 25679646 25679670 -176648677 + (T)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr4 25680597 25680619 -176647728 + AT_rich Low_complexity Low_complexity 1 22 0 887 134 0 43 chr4 25682151 25682315 -176646032 - L1PA10 LINE L1 0 6168 6012 575 170 11 16 chr4 25682723 25682913 -176645434 + CT-rich Low_complexity Low_complexity 1 189 0 1539 183 57 54 chr4 25682953 25683342 -176645005 - MLT1B LTR MaLR 0 390 1 414 269 13 168 chr4 25683877 25684115 -176644232 - MIR SINE MIR -54 208 8 2200 133 0 0 chr4 25684138 25684438 -176643909 + AluSx SINE Alu 1 300 -12 209 257 47 17 chr4 25684656 25684741 -176643606 - MIR3 SINE MIR -54 154 98 2105 73 0 73 chr4 25684902 25685216 -176643131 + AluY SINE Alu 1 291 -20 23 33 0 0 chr4 25685366 25685396 -176642951 + AT_rich Low_complexity Low_complexity 1 30 0 212 214 0 24 chr4 25685485 25685527 -176642820 + L2 LINE L2 3216 3256 -16 208 38 113 0 chr4 25685863 25685916 -176642431 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 348 252 65 0 chr4 25687091 25687214 -176641133 + MER103 DNA DNA 3 133 -33 23 33 0 0 chr4 25688022 25688052 -176640295 + AT_rich Low_complexity Low_complexity 1 30 0 3273 85 2 11 chr4 25688144 25688592 -176639755 + MLT2A1 LTR ERVL 1 444 0 475 326 58 13 chr4 25690510 25690736 -176637611 + MIR SINE MIR 22 259 -3 260 311 0 86 chr4 25690787 25690912 -176637435 + MIR SINE MIR 39 154 -63 278 0 54 0 chr4 25691023 25691060 -176637287 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 2022 122 11 0 chr4 25691061 25691339 -176637008 - AluSq SINE Alu -32 281 1 407 250 167 21 chr4 25691670 25691814 -176636533 - MIR SINE MIR -12 250 86 217 339 100 66 chr4 25691935 25692224 -176636123 + L2 LINE L2 2909 3207 -65 228 271 17 0 chr4 25692225 25692284 -176636063 + GA-rich Low_complexity Low_complexity 2 61 0 290 283 66 33 chr4 25693232 25693384 -176634963 + MIR SINE MIR 31 187 -75 1055 188 5 24 chr4 25693500 25693713 -176634634 - MER3 DNA MER1_type 0 209 1 210 264 246 0 chr4 25694335 25694445 -176633902 - MIR SINE MIR -2 260 124 258 314 48 38 chr4 25694553 25694658 -176633689 - L2 LINE L2 0 3313 3208 461 302 131 37 chr4 25695113 25695570 -176632777 + L2 LINE L2 1996 2495 -819 585 228 139 19 chr4 25695659 25695817 -176632530 + MIR SINE MIR 20 196 -66 291 296 45 0 chr4 25697562 25697650 -176630697 + MIR3 SINE MIR 83 174 -34 899 161 9 85 chr4 25699544 25699755 -176628592 - MER20 DNA MER1_type -1 218 24 422 302 31 8 chr4 25702273 25702402 -176625945 + L2 LINE L2 3182 3313 0 187 261 22 0 chr4 25702445 25702491 -176625856 - MIR3 SINE MIR -54 154 108 310 336 167 15 chr4 25702538 25702862 -176625485 - L2 LINE L2 -5 3267 2895 489 279 104 22 chr4 25702896 25703079 -176625268 + MIR SINE MIR 3 200 -62 594 243 155 7 chr4 25703601 25703749 -176624598 + MER5A DNA MER1_type 17 186 -3 1293 229 76 0 chr4 25703760 25704075 -176624272 + MER58B DNA MER1_type 1 339 -2 438 315 89 38 chr4 25704076 25704311 -176624036 + MIR SINE MIR 16 262 0 22 0 0 0 chr4 25705214 25705236 -176623111 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 25706853 25706873 -176621474 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 551 206 33 46 chr4 25707196 25707371 -176620976 + MER69 DNA AcHobo 8 2526 0 243 323 48 38 chr4 25707508 25707694 -176620653 - LTR33 LTR ERVL -297 224 37 340 292 215 42 chr4 25708633 25708917 -176619430 + L2 LINE L2 2935 3267 -5 418 277 23 0 chr4 25711181 25711311 -176617036 + MER94 DNA DNA 2 134 0 304 243 142 47 chr4 25711430 25711578 -176616769 + MIR SINE MIR 89 250 -12 363 286 143 0 chr4 25711686 25711805 -176616542 + L2 LINE L2 3137 3272 0 789 305 4 61 chr4 25712422 25712553 -176615794 + MIR SINE MIR 14 124 -138 405 0 0 0 chr4 25712553 25712598 -176615749 + (TA)n Simple_repeat Simple_repeat 1 45 0 789 305 4 61 chr4 25712598 25712728 -176615619 + MIR SINE MIR 124 260 -2 291 54 0 0 chr4 25713102 25713139 -176615208 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 78 0 0 chr4 25714616 25714667 -176613680 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr4 25714697 25714718 -176613629 + AT_rich Low_complexity Low_complexity 1 21 0 225 108 0 0 chr4 25714802 25714839 -176613508 + (CAGAGA)n Simple_repeat Simple_repeat 5 41 0 628 248 127 0 chr4 25714842 25714999 -176613348 - MIR SINE MIR -26 236 60 2563 105 5 29 chr4 25715009 25715391 -176612956 - THE1C LTR MaLR -2 373 1 3063 174 20 2 chr4 25715676 25716274 -176612073 - L1MC3 LINE L1 0 7785 7177 276 329 0 0 chr4 25716275 25716351 -176611996 - MLT1F1 LTR MaLR -456 111 36 279 271 25 8 chr4 25716364 25716482 -176611865 - L1MC/D LINE L1 -2014 5794 5675 28 0 0 26 chr4 25718523 25718540 -176609807 + AT_rich Low_complexity Low_complexity 1 17 -21 1421 206 10 34 chr4 25718540 25718832 -176609515 + AluJo SINE Alu 3 287 -25 28 0 0 26 chr4 25718832 25718853 -176609494 + AT_rich Low_complexity Low_complexity 17 38 0 376 342 80 47 chr4 25719463 25719738 -176608609 + L2 LINE L2 2985 3268 -4 202 188 0 0 chr4 25720748 25720780 -176607567 + polypyrimidine Low_complexity Low_complexity 5 36 0 193 359 109 39 chr4 25721385 25721513 -176606834 + L2 LINE L2 3136 3272 0 413 18 54 0 chr4 25722346 25722402 -176605945 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 2023 119 14 0 chr4 25723013 25723306 -176605041 - AluSx SINE Alu -15 297 1 910 119 0 0 chr4 25723309 25723435 -176604912 - AluSp SINE Alu -181 132 7 669 265 132 9 chr4 25723509 25723728 -176604619 + MIR SINE MIR 16 261 -1 537 239 42 80 chr4 25724051 25724264 -176604083 + MIR SINE MIR 2 206 -56 273 300 57 0 chr4 25724311 25724381 -176603966 - MER91C DNA MER1_type -33 107 34 340 265 0 68 chr4 25725059 25725176 -176603171 + MIR SINE MIR 61 169 -93 21 0 0 0 chr4 25727274 25727295 -176601052 + AT_rich Low_complexity Low_complexity 1 21 0 286 301 122 16 chr4 25727420 25727543 -176600804 + MIR SINE MIR 20 155 -107 593 254 94 33 chr4 25727868 25728081 -176600266 - MIR SINE MIR -27 235 10 442 273 103 30 chr4 25728100 25728265 -176600082 - MIR SINE MIR -15 247 71 346 222 111 40 chr4 25729953 25730079 -176598268 + MIR SINE MIR 128 262 0 21 36 0 0 chr4 25730715 25730743 -176597604 + AT_rich Low_complexity Low_complexity 1 28 0 5062 88 4 41 chr4 25730743 25731524 -176596823 - L1PA10 LINE L1 0 6168 5417 214 304 43 0 chr4 25731525 25731594 -176596753 - L2 LINE L2 -4 3309 3238 336 338 76 43 chr4 25732122 25732332 -176596015 + MIR SINE MIR 46 262 0 1989 131 60 20 chr4 25732558 25732910 -176595437 + MER47A DNA MER2_type 1 366 0 469 278 36 92 chr4 25732958 25733264 -176595083 - L2 LINE L2 -52 3220 2932 300 290 174 63 chr4 25733466 25733880 -176594467 - L2 LINE L2 -823 2491 2032 2174 95 14 3 chr4 25735266 25735549 -176592798 - AluSc SINE Alu -23 286 1 206 214 0 0 chr4 25736304 25736346 -176592001 + CT-rich Low_complexity Low_complexity 3 44 0 191 238 128 94 chr4 25736357 25736488 -176591859 + L2 LINE L2 3143 3313 0 206 81 0 54 chr4 25736753 25736790 -176591557 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 240 35 0 0 chr4 25737907 25737936 -176590411 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 263 322 6 12 chr4 25740428 25740569 -176587778 - MIR3 SINE MIR -6 202 62 212 242 81 61 chr4 25740669 25740768 -176587579 - L2 LINE L2 -18 3295 3195 1873 161 13 10 chr4 25741375 25741679 -176586668 + AluSx SINE Alu 1 305 -7 270 297 0 0 chr4 25741715 25741779 -176586568 + L2 LINE L2 3208 3271 -1 1749 65 5 0 chr4 25742272 25742489 -176585858 + AluY SINE Alu 1 218 -93 189 107 0 0 chr4 25742502 25742530 -176585817 + (A)n Simple_repeat Simple_repeat 1 28 0 312 335 32 6 chr4 25742692 25742850 -176585497 + MER117 DNA MER1_type 7 168 -29 548 242 38 97 chr4 25743166 25743559 -176584788 + L1ME4a LINE L1 5727 6096 -25 228 253 84 24 chr4 25743602 25743685 -176584662 - MIR SINE MIR -48 214 127 857 231 49 39 chr4 25743764 25743967 -176584380 - MIR SINE MIR -56 206 2 521 275 64 39 chr4 25744239 25744472 -176583875 - L2 LINE L2 -29 3284 3046 25 51 0 0 chr4 25744713 25744752 -176583595 + AT_rich Low_complexity Low_complexity 1 39 0 260 189 27 40 chr4 25745630 25745704 -176582643 + MIR SINE MIR 176 248 -14 22 0 0 0 chr4 25745715 25745737 -176582610 + AT_rich Low_complexity Low_complexity 1 22 0 264 290 14 0 chr4 25745743 25745812 -176582535 + L2 LINE L2 3203 3272 0 204 377 54 72 chr4 25745813 25746036 -176582311 + L2 LINE L2 3054 3272 0 282 333 128 0 chr4 25746171 25746273 -176582074 - L2 LINE L2 0 3272 3158 185 243 71 0 chr4 25746468 25746538 -176581809 + MIR SINE MIR 180 254 -8 245 65 0 0 chr4 25746542 25746573 -176581774 - MLT2C2 LTR ERVL 0 397 367 294 29 0 0 chr4 25746576 25746611 -176581736 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 319 21 42 0 chr4 25746610 25746658 -176581689 + (TA)n Simple_repeat Simple_repeat 1 50 0 2364 60 0 54 chr4 25746778 25747094 -176581253 + AluY SINE Alu 1 299 -12 1686 211 57 0 chr4 25747094 25747464 -176580883 - MLT2C2 LTR ERVL -71 393 3 343 287 65 67 chr4 25747493 25747658 -176580689 - MIR SINE MIR -63 145 19 794 138 7 0 chr4 25747971 25748109 -176580238 + L1MB1 LINE L1 6030 6168 0 628 292 129 2 chr4 25748931 25749135 -176579212 + MIR SINE MIR 11 235 -27 395 67 97 0 chr4 25749139 25749145 -176579202 + (TA)n Simple_repeat Simple_repeat 2 6 -142 2026 120 7 0 chr4 25749145 25749428 -176578919 + AluSg SINE Alu 1 285 -25 395 67 97 0 chr4 25749428 25749555 -176578792 + (TA)n Simple_repeat Simple_repeat 6 148 0 22 0 0 0 chr4 25749558 25749580 -176578767 + AT_rich Low_complexity Low_complexity 1 22 0 589 97 67 0 chr4 25749596 25749761 -176578586 + (TA)n Simple_repeat Simple_repeat 2 177 0 226 320 270 0 chr4 25750034 25750212 -176578135 - MIR SINE MIR -3 259 34 22 0 0 0 chr4 25751592 25751614 -176576733 + AT_rich Low_complexity Low_complexity 1 22 0 286 319 72 14 chr4 25752209 25752347 -176576000 - MIR SINE MIR -70 192 47 2004 134 23 0 chr4 25753228 25753527 -176574820 - AluSx SINE Alu -6 306 1 696 350 12 4 chr4 25754005 25754262 -176574085 + MIR SINE MIR 4 262 0 263 281 73 0 chr4 25757417 25757499 -176570848 + MER91C DNA MER1_type 22 109 -31 598 245 94 10 chr4 25757612 25757908 -176570439 - MER33 DNA MER1_type -2 361 1 2200 113 0 46 chr4 25758284 25758467 -176569880 - AluSx SINE Alu 0 312 149 2525 56 0 10 chr4 25758467 25758770 -176569577 - AluY SINE Alu -11 300 1 2200 113 0 46 chr4 25758770 25758913 -176569434 - AluSx SINE Alu -163 149 1 462 304 130 24 chr4 25759314 25759521 -176568826 - MIR SINE MIR -15 247 19 253 298 24 12 chr4 25759648 25759732 -176568615 - MIR3 SINE MIR -41 167 83 819 264 27 46 chr4 25759907 25760275 -176568072 - L1ME3A LINE L1 0 6170 5810 2228 97 0 32 chr4 25760708 25761016 -176567331 + AluSg SINE Alu 1 298 -12 401 365 6 0 chr4 25762326 25762485 -176565862 - MIR3 SINE MIR -10 198 39 767 264 95 49 chr4 25763552 25763866 -176564481 - L1ME4a LINE L1 0 6121 5768 351 0 0 0 chr4 25763866 25763905 -176564442 + (CA)n Simple_repeat Simple_repeat 2 40 0 767 264 95 49 chr4 25763905 25764161 -176564186 - L1ME4a LINE L1 -353 5768 5525 207 100 0 0 chr4 25764499 25764529 -176563818 + (A)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr4 25765265 25765289 -176563058 + AT_rich Low_complexity Low_complexity 1 24 0 184 331 47 47 chr4 25765827 25765954 -176562393 + MIR SINE MIR 106 232 -30 21 57 0 0 chr4 25766338 25766373 -176561974 + AT_rich Low_complexity Low_complexity 1 35 0 237 178 0 0 chr4 25769567 25769612 -176558735 + T-rich Low_complexity Low_complexity 1 45 0 221 246 0 0 chr4 25772908 25772973 -176555374 + T-rich Low_complexity Low_complexity 1 65 0 222 205 0 0 chr4 25774140 25774179 -176554168 + (CA)n Simple_repeat Simple_repeat 2 40 0 25 31 0 0 chr4 25775251 25775283 -176553064 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr4 25775528 25775552 -176552795 + AT_rich Low_complexity Low_complexity 1 24 0 180 204 0 45 chr4 25775894 25775938 -176552409 - L2 LINE L2 -6 3307 3266 189 256 0 0 chr4 25776044 25776083 -176552264 + L2 LINE L2 3267 3305 -8 204 250 0 0 chr4 25776091 25776139 -176552208 + (TAA)n Simple_repeat Simple_repeat 2 49 0 523 298 26 26 chr4 25776162 25776353 -176551994 - MIR SINE MIR -54 208 18 900 189 4 103 chr4 25777190 25777433 -176550914 + MER20 DNA MER1_type 1 219 0 294 309 0 36 chr4 25779328 25779438 -176548909 + L2 LINE L2 3208 3313 0 228 263 0 0 chr4 25779660 25779717 -176548630 + (TA)n Simple_repeat Simple_repeat 1 57 0 200 159 0 23 chr4 25779744 25779788 -176548559 + (TATG)n Simple_repeat Simple_repeat 4 46 0 2331 71 0 61 chr4 25782260 25782586 -176545761 - AluY SINE Alu -5 306 1 2417 66 3 25 chr4 25786590 25786907 -176541440 - AluY SINE Alu -1 310 1 236 337 56 0 chr4 25787086 25787175 -176541172 - L2 LINE L2 -63 3209 3116 229 348 12 81 chr4 25792423 25792584 -176535763 - L2 LINE L2 -7 3265 3116 204 40 0 0 chr4 25793843 25793868 -176534479 + (TG)n Simple_repeat Simple_repeat 2 26 0 199 282 64 82 chr4 25794087 25794197 -176534150 - L2 LINE L2 -3 3310 3203 183 275 0 0 chr4 25794261 25794301 -176534046 - L2 LINE L2 -15 3257 3218 2007 139 7 3 chr4 25794624 25794919 -176533428 - AluSx SINE Alu -16 296 1 1789 173 0 0 chr4 25795984 25796285 -176532062 + AluSx SINE Alu 1 301 -11 284 289 124 8 chr4 25796365 25796486 -176531861 - L2 LINE L2 -2 3270 3136 322 164 82 27 chr4 25796578 25796651 -176531696 - MIR3 SINE MIR -42 166 90 227 319 69 58 chr4 25796766 25797042 -176531305 - L2 LINE L2 -665 2649 2371 377 253 82 48 chr4 25797410 25797556 -176530791 - MIR SINE MIR -70 192 42 210 167 0 0 chr4 25798405 25798441 -176529906 + L2 LINE L2 3261 3296 -17 180 302 48 0 chr4 25799023 25799086 -176529261 + L2 LINE L2 1157 1222 -2092 1217 172 79 7 chr4 25799449 25799739 -176528608 - L1MA9 LINE L1 -40 6272 5962 1599 209 3 14 chr4 25799740 25800037 -176528310 - AluJo SINE Alu -14 298 5 2145 92 0 17 chr4 25800154 25800499 -176527848 - AluY SINE Alu 0 311 8 344 250 29 6 chr4 25800960 25801132 -176527215 + (TA)n Simple_repeat Simple_repeat 2 177 0 184 318 16 16 chr4 25801391 25801454 -176526893 - MIR SINE MIR -114 148 86 322 241 256 15 chr4 25801499 25801636 -176526711 + MIR SINE MIR 7 176 -86 * 479 214 86 26 chr4 25801633 25801750 -176526597 - L2 LINE L2 0 3313 3190 225 297 0 0 chr4 25801751 25801815 -176526532 + MIR SINE MIR 170 233 -29 442 302 36 7 chr4 25803810 25803949 -176524398 + L2 LINE L2 3169 3311 -2 282 371 39 49 chr4 25804692 25804999 -176523348 + L2 LINE L2 2966 3269 -3 181 273 0 0 chr4 25805137 25805181 -176523166 - L2 LINE L2 -2 3311 3268 2011 144 39 33 chr4 25805296 25805658 -176522689 - THE1B LTR MaLR 0 364 1 276 383 83 0 chr4 25805760 25805880 -176522467 - L2 LINE L2 -2 3270 3141 997 228 50 17 chr4 25806506 25806747 -176521600 - MIR SINE MIR -1 261 13 459 286 161 6 chr4 25808552 25808713 -176519634 + MER5A DNA MER1_type 4 189 0 456 334 46 23 chr4 25809714 25809927 -176518420 + MIR SINE MIR 32 247 -15 577 88 0 0 chr4 25810363 25810443 -176517904 - MADE1 DNA Mariner 0 80 1 217 254 0 0 chr4 25810556 25810611 -176517736 + T-rich Low_complexity Low_complexity 2 56 0 249 278 42 14 chr4 25810679 25810751 -176517596 + L2 LINE L2 3197 3270 -43 278 348 43 7 chr4 25811382 25811425 -176516922 - MIR SINE MIR -70 192 152 2316 51 0 4 chr4 25811425 25811700 -176516647 - AluY SINE Alu -19 292 19 278 348 43 7 chr4 25811700 25811794 -176516553 - MIR SINE MIR -110 152 50 183 247 137 27 chr4 25812512 25812585 -176515762 - MIR SINE MIR -67 141 61 23 33 0 0 chr4 25812673 25812703 -176515644 + AT_rich Low_complexity Low_complexity 1 30 0 384 237 83 47 chr4 25813424 25813593 -176514754 - MER5B DNA MER1_type -2 176 2 522 236 32 57 chr4 25813783 25813940 -176514407 + L2 LINE L2 3152 3304 -9 188 364 0 0 chr4 25814239 25814316 -176514031 + MIR3 SINE MIR 88 164 -44 375 103 46 47 chr4 25815703 25816038 -176512309 + (TATAA)n Simple_repeat Simple_repeat 1 334 0 584 290 202 0 chr4 25816332 25816525 -176511822 - MIR SINE MIR -25 237 6 445 196 23 113 chr4 25817005 25817081 -176511266 - MER5A DNA MER1_type -8 181 120 1198 159 43 0 chr4 25817081 25817289 -176511058 + MER20 DNA MER1_type 1 217 -2 445 196 23 113 chr4 25817289 25817345 -176511002 - MER5A DNA MER1_type -69 120 61 24 32 0 0 chr4 25817976 25818007 -176510340 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr4 25818366 25818409 -176509938 + AT_rich Low_complexity Low_complexity 1 43 0 334 392 104 15 chr4 25818541 25818801 -176509546 - L3 LINE CR1 -1139 438 156 856 277 78 18 chr4 25819223 25819517 -176508830 - L2 LINE L2 -173 3140 2787 316 313 39 0 chr4 25819517 25819645 -176508702 - MER94 DNA DNA 0 134 2 856 277 78 18 chr4 25819645 25819818 -176508529 - L2 LINE L2 -526 2787 2626 2028 133 24 46 chr4 25819821 25820190 -176508157 + THE1B LTR MaLR 2 362 -2 337 336 8 49 chr4 25820232 25820354 -176507993 - MIR3 SINE MIR -91 117 1 195 151 151 19 chr4 25822497 25822550 -176505797 - MIR SINE MIR -122 140 81 387 0 0 0 chr4 25824361 25824404 -176503943 + (CA)n Simple_repeat Simple_repeat 2 44 0 1491 159 21 110 chr4 25825370 25825562 -176502785 - AluYb8 SINE Alu -19 299 146 2288 86 0 3 chr4 25825562 25825852 -176502495 - AluY SINE Alu -22 289 1 985 134 0 0 chr4 25825852 25825986 -176502361 - AluSq/x SINE Alu -178 135 2 375 319 83 7 chr4 25826718 25826862 -176501485 + L2 LINE L2 3116 3270 -2 2523 67 0 3 chr4 25826960 25827272 -176501075 + AluY SINE Alu 1 311 0 251 295 142 35 chr4 25827369 25827630 -176500717 - L2 LINE L2 -836 2478 2190 222 375 23 16 chr4 25827656 25827784 -176500563 + L3 LINE CR1 1446 1574 -3 399 231 161 35 chr4 25828688 25828943 -176499404 - L1ME4a LINE L1 -253 5868 5582 28 71 0 0 chr4 25830156 25830212 -176498135 + AT_rich Low_complexity Low_complexity 1 56 0 399 197 0 25 chr4 25831940 25832062 -176496285 + CT-rich Low_complexity Low_complexity 2 120 0 200 200 0 0 chr4 25833437 25833472 -176494875 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 347 315 102 0 chr4 25834310 25834437 -176493910 + MIR3 SINE MIR 62 201 -7 201 262 16 0 chr4 25834507 25834568 -176493779 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 189 121 0 0 chr4 25835616 25835649 -176492698 + (TG)n Simple_repeat Simple_repeat 2 34 0 201 352 0 9 chr4 25836127 25836232 -176492115 + (TA)n Simple_repeat Simple_repeat 1 104 0 22 35 0 0 chr4 25836545 25836574 -176491773 + AT_rich Low_complexity Low_complexity 1 29 0 348 176 40 0 chr4 25837832 25837906 -176490441 + MER116 DNA Mariner 2 78 -2 500 288 91 26 chr4 25838005 25838223 -176490124 + MIR SINE MIR 30 259 -3 643 242 38 0 chr4 25838718 25838875 -176489472 + MER117 DNA MER1_type 6 168 -29 337 314 57 6 chr4 25840033 25840192 -176488155 - L3b LINE CR1 -110 1473 1307 234 0 0 0 chr4 25841002 25841028 -176487319 + (A)n Simple_repeat Simple_repeat 1 26 0 229 368 0 0 chr4 25842430 25842487 -176485860 + L2 LINE L2 3209 3265 -7 216 214 0 0 chr4 25845213 25845255 -176483092 + T-rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr4 25846225 25846257 -176482090 + AT_rich Low_complexity Low_complexity 1 32 0 2123 101 0 76 chr4 25847625 25847953 -176480394 + AluSx SINE Alu 1 303 -9 432 318 0 0 chr4 25848270 25848396 -176479951 - MER117 DNA MER1_type -43 154 29 183 262 204 0 chr4 25849789 25849892 -176478455 - L2 LINE L2 -64 3249 3126 746 216 149 3 chr4 25850029 25850311 -176478036 + MER33 DNA MER1_type 1 323 -1 2245 63 0 0 chr4 25851574 25851842 -176476505 - AluY SINE Alu -11 300 33 1287 147 62 23 chr4 25851942 25852074 -176476273 + L1MA10 LINE L1 6015 6140 -194 285 29 0 0 chr4 25852074 25852108 -176476239 + (CA)n Simple_repeat Simple_repeat 1 34 0 1287 147 62 23 chr4 25852108 25852282 -176476065 + L1MA10 LINE L1 6140 6333 -1 198 264 126 11 chr4 25852871 25852958 -176475389 + MIR SINE MIR 156 252 -10 1066 338 56 47 chr4 25854761 25855752 -176472595 - L2 LINE L2 -12 3260 2262 181 381 0 0 chr4 25855865 25855928 -176472419 - L2 LINE L2 -7 3306 3244 285 328 70 30 chr4 25856038 25856239 -176472108 - L3b LINE CR1 -159 1424 1216 454 335 38 32 chr4 25856531 25856716 -176471631 + MER5A DNA MER1_type 3 188 -1 2361 95 0 0 chr4 25857142 25857447 -176470900 - AluSg1 SINE Alu -4 305 1 225 211 22 39 chr4 25858474 25858654 -176469693 + (TG)n Simple_repeat Simple_repeat 2 178 0 24 0 0 0 chr4 25858857 25858881 -176469466 + AT_rich Low_complexity Low_complexity 1 24 0 583 226 15 22 chr4 25858893 25859030 -176469317 - MIR SINE MIR -13 249 114 413 275 134 33 chr4 25859041 25859222 -176469125 - L1ME4a LINE L1 -2 6119 5958 186 71 0 0 chr4 25859222 25859250 -176469097 + (TA)n Simple_repeat Simple_repeat 1 28 0 413 275 134 33 chr4 25859250 25859457 -176468890 - L1ME4a LINE L1 -163 5958 5692 25 31 0 0 chr4 25859574 25859606 -176468741 + AT_rich Low_complexity Low_complexity 1 32 0 484 271 192 9 chr4 25860303 25860517 -176467830 + MIR SINE MIR 6 258 -4 328 213 13 13 chr4 25861438 25861513 -176466834 - L2 LINE L2 -4 3309 3235 2495 87 122 5 chr4 25861596 25861997 -176466350 - LTR7 LTR ERV1 -2 448 1 294 69 52 0 chr4 25864139 25864197 -176464150 + (CAA)n Simple_repeat Simple_repeat 3 63 0 302 115 19 0 chr4 25864309 25864361 -176463986 + (TG)n Simple_repeat Simple_repeat 1 53 0 243 0 0 0 chr4 25864515 25864542 -176463805 + (TA)n Simple_repeat Simple_repeat 2 28 0 234 0 0 0 chr4 25864565 25864591 -176463756 + (CCAA)n Simple_repeat Simple_repeat 1 26 0 243 0 0 0 chr4 25864753 25864780 -176463567 + (TC)n Simple_repeat Simple_repeat 2 28 0 354 317 37 6 chr4 25872535 25872699 -176455648 - MIR SINE MIR -2 260 92 22 0 0 0 chr4 25872949 25872971 -176455376 + AT_rich Low_complexity Low_complexity 1 22 0 450 131 30 0 chr4 25873016 25873115 -176455232 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 2089 111 10 7 chr4 25873411 25873699 -176454648 + AluSx SINE Alu 1 289 -23 7600 24 0 13 chr4 25874496 25875951 -176452396 - L1PA3 LINE L1 0 6155 4709 2264 81 6 50 chr4 25878205 25878528 -176449819 + AluSc SINE Alu 1 309 0 202 327 187 19 chr4 25878898 25879005 -176449342 - L2 LINE L2 -9 3263 3139 298 319 43 17 chr4 25879013 25879129 -176449218 - L2 LINE L2 -8 3305 3187 1325 96 0 0 chr4 25880820 25880986 -176447361 + AluSx SINE Alu 26 191 -121 391 328 40 75 chr4 25881673 25881926 -176446421 - L2 LINE L2 -96 3176 2933 725 299 38 46 chr4 25882020 25882398 -176445949 + L1ME3 LINE L1 5455 5829 -333 31 26 0 0 chr4 25882435 25882473 -176445874 + AT_rich Low_complexity Low_complexity 1 38 0 976 133 0 0 chr4 25882607 25882742 -176445605 + AluSq SINE Alu 35 169 -144 2057 147 0 3 chr4 25882924 25883237 -176445110 - AluSx SINE Alu 0 312 1 361 226 212 22 chr4 25883756 25883893 -176444454 - MIR SINE MIR -16 246 84 195 100 0 0 chr4 25884148 25884178 -176444169 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 2354 154 0 8 chr4 25884790 25885167 -176443180 + L1PA16 LINE L1 5793 6166 0 211 280 176 48 chr4 25885393 25885518 -176442829 + MER5B DNA MER1_type 27 167 -11 938 184 5 65 chr4 25885528 25885650 -176442697 - MER5B DNA MER1_type -4 174 65 2388 88 17 0 chr4 25885650 25885946 -176442401 - AluSx SINE Alu -11 301 1 938 184 5 65 chr4 25885946 25886008 -176442339 - MER5B DNA MER1_type -113 65 1 2044 116 10 42 chr4 25886048 25886358 -176441989 + AluSq SINE Alu 1 300 -13 442 288 134 18 chr4 25888800 25889079 -176439268 + L2 LINE L2 2716 3025 -288 341 302 70 12 chr4 25889131 25889303 -176439044 - LTR16C LTR ERVL 0 491 310 2470 54 0 3 chr4 25889551 25889846 -176438501 - AluY SINE Alu -2 309 16 409 227 57 0 chr4 25890042 25890147 -176438200 + MIR SINE MIR 61 170 -62 449 266 191 25 chr4 25891143 25891342 -176437005 + MIR SINE MIR 21 252 -10 209 409 0 11 chr4 25891412 25891500 -176436847 - L2 LINE L2 -18 3254 3168 616 307 91 13 chr4 25892036 25892267 -176436080 + MIR SINE MIR 14 262 0 225 247 57 95 chr4 25892696 25892854 -176435493 + L1ME LINE L1 5470 5621 -543 2277 117 0 0 chr4 25892989 25893288 -176435059 - AluSx SINE Alu -13 299 1 282 271 36 50 chr4 25893302 25893442 -176434905 + MER104 DNA Tc2 39 176 -4 1159 244 67 132 chr4 25894283 25895026 -176433321 - L2 LINE L2 -1 3312 2522 1674 65 0 0 chr4 25895026 25895225 -176433122 + AluY SINE Alu 1 199 -112 439 47 0 151 chr4 25895225 25895311 -176433036 + AluY SINE Alu 239 311 0 1159 244 67 132 chr4 25895311 25895575 -176432772 - L2 LINE L2 -789 2524 2301 350 206 53 175 chr4 25896391 25896580 -176431767 + MIR SINE MIR 41 206 -2 347 302 26 79 chr4 25896762 25896818 -176431529 + MIR SINE MIR 20 77 -185 2071 119 0 7 chr4 25896818 25897104 -176431243 - AluSx SINE Alu -7 305 22 347 302 26 79 chr4 25897104 25897236 -176431111 + MIR SINE MIR 77 198 -64 210 71 0 0 chr4 25897262 25897290 -176431057 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 473 232 0 0 chr4 25897315 25897414 -176430933 - LTR33A LTR ERVL -2 521 423 212 310 50 20 chr4 25897604 25897704 -176430643 - MIR SINE MIR -110 152 50 739 265 31 31 chr4 25897997 25898254 -176430093 + MIR SINE MIR 6 262 0 740 290 41 41 chr4 25898729 25898974 -176429373 + MIR SINE MIR 6 250 -12 2545 56 0 0 chr4 25899556 25899862 -176428485 - AluY SINE Alu -5 306 1 222 91 0 0 chr4 25900104 25900137 -176428210 + (TG)n Simple_repeat Simple_repeat 2 34 0 203 229 43 71 chr4 25902177 25902247 -176426100 - L2 LINE L2 -11 3302 3235 1736 150 0 0 chr4 25902540 25902794 -176425553 - AluSx SINE Alu -7 305 52 233 267 48 38 chr4 25903381 25903486 -176424861 - MIR SINE MIR -70 192 87 335 237 141 22 chr4 25903529 25903664 -176424683 - MIR SINE MIR -10 252 102 597 284 0 25 chr4 25903720 25903917 -176424430 - Charlie7 DNA MER1_type -1 2611 2420 1103 211 9 44 chr4 25904040 25904267 -176424080 - MER20 DNA MER1_type 0 219 1 349 285 58 29 chr4 25904596 25904733 -176423614 + MIR SINE MIR 9 149 -113 231 240 90 50 chr4 25904779 25904879 -176423468 + MIR SINE MIR 146 249 -13 224 77 26 0 chr4 25904895 25904934 -176423413 + (TA)n Simple_repeat Simple_repeat 2 41 0 319 243 81 36 chr4 25904958 25905069 -176423278 + L2 LINE L2 3194 3309 -4 266 167 17 0 chr4 25905265 25905325 -176423022 + CT-rich Low_complexity Low_complexity 1 61 0 1612 187 14 14 chr4 25905331 25905620 -176422727 - AluJo SINE Alu -23 289 1 1177 132 0 42 chr4 25906771 25906960 -176421387 - AluSx SINE Alu -127 185 5 2015 134 6 16 chr4 25908389 25908703 -176419644 + AluSx SINE Alu 1 311 -1 335 129 12 35 chr4 25908978 25909063 -176419284 + CT-rich Low_complexity Low_complexity 3 85 0 384 237 153 17 chr4 25909080 25909198 -176419149 - L2 LINE L2 -1 3312 3179 277 282 0 12 chr4 25909907 25909992 -176418355 + T-rich Low_complexity Low_complexity 3 86 0 1682 109 0 0 chr4 25910046 25910257 -176418090 - AluSq SINE Alu -102 211 1 274 260 43 61 chr4 25911255 25911336 -176417011 + L1ME4a LINE L1 5704 5785 -336 1844 125 88 0 chr4 25911336 25911608 -176416739 + AluSx SINE Alu 1 296 -16 274 260 43 61 chr4 25911608 25911803 -176416544 + L1ME4a LINE L1 5785 5975 -146 244 265 60 43 chr4 25912444 25912561 -176415786 + L2 LINE L2 3195 3313 0 1209 137 0 0 chr4 25912981 25913156 -176415191 - AluSq SINE Alu -9 304 130 494 278 139 19 chr4 25914264 25914473 -176413874 - MIR SINE MIR -18 244 11 399 127 0 0 chr4 25914940 25915003 -176413344 + (TG)n Simple_repeat Simple_repeat 1 63 0 2434 90 0 0 chr4 25915464 25915763 -176412584 - AluSq SINE Alu -14 299 1 324 248 178 51 chr4 25915778 25915992 -176412355 - L2 LINE L2 -25 3247 3007 400 311 59 10 chr4 25917226 25917432 -176410915 - MIR SINE MIR -11 251 36 184 91 30 0 chr4 25917754 25917787 -176410560 + L2 LINE L2 3280 3313 0 421 316 43 7 chr4 25918133 25918272 -176410075 + MIR SINE MIR 1 144 -118 429 297 29 35 chr4 25918844 25919018 -176409329 + MIR SINE MIR 7 188 -63 28 0 0 26 chr4 25919054 25919071 -176409276 + AT_rich Low_complexity Low_complexity 1 17 -21 2438 75 0 7 chr4 25919071 25919376 -176408971 - AluY SINE Alu -8 303 1 28 0 0 26 chr4 25919376 25919397 -176408950 + AT_rich Low_complexity Low_complexity 17 38 0 241 221 44 29 chr4 25920037 25920105 -176408242 - L2 LINE L2 -219 3053 2985 4202 161 26 20 chr4 25920278 25921013 -176407334 - L1MB3 LINE L1 -1 6182 5444 385 320 79 63 chr4 25921557 25921951 -176406396 + L2 LINE L2 2914 3313 0 408 246 20 116 chr4 25921960 25922159 -176406188 - MIR3 SINE MIR -10 198 19 713 291 46 12 chr4 25922187 25922408 -176405939 + MIR SINE MIR 34 261 -1 235 167 19 0 chr4 25922745 25922799 -176405548 + T-rich Low_complexity Low_complexity 3 57 0 649 275 66 37 chr4 25922974 25923218 -176405129 - MIR SINE MIR 0 262 12 228 276 11 11 chr4 25923365 25923452 -176404895 + CT-rich Low_complexity Low_complexity 2 88 0 750 27 0 7 chr4 25923689 25923782 -176404565 - L1HS LINE L1 -3 6165 6062 * 773 0 11 0 chr4 25923781 25923874 -176404473 + L1HS LINE L1 5964 6057 -98 207 0 0 0 chr4 25924352 25924375 -176403972 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 240 226 11 54 chr4 25924691 25924784 -176403563 + CT-rich Low_complexity Low_complexity 3 91 0 229 174 0 0 chr4 25925345 25925391 -176402956 + MIR SINE MIR 120 165 -97 502 256 159 19 chr4 25926196 25926403 -176401944 + MIR SINE MIR 6 241 -21 212 267 13 0 chr4 25926428 25926503 -176401844 - MIR SINE MIR -9 253 178 386 293 21 48 chr4 25926553 25926741 -176401606 + L2 LINE L2 3115 3297 -16 3245 54 0 0 chr4 25926866 25927256 -176401091 + L1P3 LINE L1 5409 5798 -374 194 289 0 0 chr4 25927492 25927537 -176400810 + L2 LINE L2 3269 3313 0 5466 122 13 2 chr4 25929285 25930153 -176398194 + L1PA16 LINE L1 5254 6130 -36 22 35 0 0 chr4 25931349 25931378 -176396969 + AT_rich Low_complexity Low_complexity 1 29 0 183 80 0 0 chr4 25931987 25932012 -176396335 + (ATATG)n Simple_repeat Simple_repeat 1 25 0 256 159 16 16 chr4 25932069 25932132 -176396215 + CT-rich Low_complexity Low_complexity 2 64 0 462 65 0 0 chr4 25932293 25932355 -176395992 + (CA)n Simple_repeat Simple_repeat 2 63 0 26 30 0 0 chr4 25935859 25935892 -176392455 + AT_rich Low_complexity Low_complexity 1 33 0 254 326 21 0 chr4 25936485 25936580 -176391767 - MIR3 SINE MIR -6 202 106 506 271 96 27 chr4 25936629 25936817 -176391530 - MIR SINE MIR -15 247 47 471 35 0 0 chr4 25937464 25937521 -176390826 + (TG)n Simple_repeat Simple_repeat 2 58 0 400 342 92 70 chr4 25937883 25938111 -176390236 - L2 LINE L2 -1 3271 3039 395 225 28 120 chr4 25938152 25938314 -176390033 + MIR SINE MIR 44 186 -63 250 340 105 39 chr4 25940797 25941343 -176387004 + L2 LINE L2 2566 3149 -123 428 310 70 0 chr4 25941769 25941898 -176386449 + L2 LINE L2 3133 3270 -2 27 0 0 0 chr4 25941954 25941981 -176386366 + AT_rich Low_complexity Low_complexity 1 27 0 224 372 101 0 chr4 25942086 25942215 -176386132 + L3 LINE CR1 1430 1571 -6 522 302 116 9 chr4 25943075 25943300 -176385047 - MIR SINE MIR -13 249 1 817 214 71 0 chr4 25943359 25943555 -176384792 + MER20 DNA MER1_type 10 219 0 212 139 0 23 chr4 25943735 25943778 -176384569 + (GAA)n Simple_repeat Simple_repeat 1 42 0 315 0 0 0 chr4 25944650 25944685 -176383662 + (CA)n Simple_repeat Simple_repeat 1 35 0 1613 152 42 4 chr4 25945084 25945347 -176383000 + AluJb SINE Alu 19 291 -21 25 0 0 0 chr4 25945353 25945378 -176382969 + AT_rich Low_complexity Low_complexity 1 25 0 190 204 183 75 chr4 25945660 25945753 -176382594 - MER5A DNA MER1_type -43 146 44 217 190 52 69 chr4 25945688 25945746 -176382601 + MER5B DNA MER1_type 72 128 -50 284 235 24 24 chr4 25946305 25946390 -176381957 + GA-rich Low_complexity Low_complexity 5 89 0 231 243 36 45 chr4 25946679 25946790 -176381557 + MER113 DNA MER1_type? 7 116 -405 831 209 134 0 chr4 25946896 25947083 -176381264 + MIR SINE MIR 1 212 -50 287 314 88 24 chr4 25947379 25947510 -176380837 - MIR SINE MIR -45 163 25 186 195 39 0 chr4 25947675 25947752 -176380595 + (TTA)n Simple_repeat Simple_repeat 2 81 0 335 230 14 2 chr4 25947964 25948050 -176380297 + MER5A DNA MER1_type 36 131 -57 463 250 8 8 chr4 25949144 25949276 -176379071 + L1MC4 LINE L1 7910 8041 -1 411 233 308 0 chr4 25949343 25949476 -176378871 - MER96 DNA MER1_type 0 175 2 188 182 227 23 chr4 25949655 25949699 -176378648 - L2 LINE L2 -50 3222 3170 1986 144 3 41 chr4 25949846 25950166 -176378181 - AluSq SINE Alu -5 308 1 35 0 0 0 chr4 25950240 25950275 -176378072 + AT_rich Low_complexity Low_complexity 1 35 0 186 359 0 0 chr4 25950601 25950665 -176377682 + L2 LINE L2 3245 3308 -5 206 243 0 0 chr4 25950707 25950744 -176377603 + L2 LINE L2 3231 3267 -46 5252 35 2 14 chr4 25951481 25952169 -176376178 + L1PA4 LINE L1 5528 6155 0 199 295 63 32 chr4 25952202 25952297 -176376050 - L2 LINE L2 -35 3278 3181 279 275 50 53 chr4 25953616 25953736 -176374611 - MIR3 SINE MIR -18 190 70 1241 238 120 26 chr4 25953763 25954229 -176374118 + MLT1H LTR MaLR 18 527 -22 23 0 0 0 chr4 25954320 25954343 -176374004 + AT_rich Low_complexity Low_complexity 1 23 0 310 223 8 92 chr4 25954669 25954799 -176373548 + MER113 DNA MER1_type? 1 119 -402 253 327 167 18 chr4 25955554 25955722 -176372625 + L3 LINE CR1 404 596 -981 524 294 71 47 chr4 25955767 25955978 -176372369 + MIR SINE MIR 47 262 0 551 314 169 30 chr4 25955992 25956464 -176371883 + L3 LINE CR1 559 1096 -481 2593 49 12 0 chr4 25956465 25956790 -176371557 - L1PA8 LINE L1 -4 6168 5840 403 256 0 0 chr4 25956925 25957007 -176371340 - Tigger3(Golem) DNA MER2_type -2947 82 1 2113 129 6 22 chr4 25957693 25958010 -176370337 + AluSx SINE Alu 1 312 0 453 100 14 14 chr4 25958447 25958517 -176369830 + AluSp SINE Alu 91 160 -153 210 209 58 35 chr4 25958832 25958918 -176369429 + (CCCCG)n Simple_repeat Simple_repeat 2 89 0 217 232 0 42 chr4 25959147 25959242 -176369105 + (CCCCG)n Simple_repeat Simple_repeat 2 92 0 1951 122 80 0 chr4 25961426 25961713 -176366634 - AluSx SINE Alu -2 310 1 280 222 56 0 chr4 25961768 25961858 -176366489 - L1ME LINE L1 -254 5867 5773 1285 136 50 3 chr4 25962328 25962626 -176365721 - MER84 LTR ERVI 0 507 113 231 206 0 137 chr4 25963128 25963201 -176365146 + L2 LINE L2 3207 3269 -3 2203 89 20 0 chr4 25963395 25963688 -176364659 + AluSx SINE Alu 1 299 -13 439 204 73 98 chr4 25964496 25964771 -176363576 + L1MC4 LINE L1 7751 8018 -24 194 191 0 24 chr4 25964864 25964906 -176363441 - MIR SINE MIR -117 145 105 181 344 122 15 chr4 25964959 25965090 -176363257 - L2 LINE L2 -28 3244 3100 271 230 11 58 chr4 25965118 25965205 -176363142 + L2 LINE L2 2932 3014 -258 258 196 265 10 chr4 25967765 25967867 -176360480 + MIR SINE MIR 19 146 -62 2047 119 6 45 chr4 25968654 25968789 -176359558 + AluSx SINE Alu 1 140 -172 2438 71 0 0 chr4 25968789 25969095 -176359252 + AluY SINE Alu 1 306 0 2047 119 6 45 chr4 25969095 25969269 -176359078 + AluSx SINE Alu 140 299 -13 189 203 80 123 chr4 25969519 25969657 -176358690 - MIR SINE MIR -61 147 16 182 264 81 23 chr4 25970223 25970310 -176358037 + MIR SINE MIR 48 139 -69 260 258 21 65 chr4 25970386 25970479 -176357868 - MIR SINE MIR -113 149 61 436 179 15 0 chr4 25971734 25971801 -176356546 + AluJ/FLAM SINE Alu 2 69 -243 1578 160 11 25 chr4 25971802 25972077 -176356270 + AluJo SINE Alu 31 301 -11 423 189 11 22 chr4 25972108 25972198 -176356149 - MIR SINE MIR -71 191 103 347 297 89 50 chr4 25972206 25972465 -176355882 + L3 LINE CR1 1277 1545 -32 250 254 42 0 chr4 25972661 25972732 -176355615 - MER96 DNA MER1_type? -98 77 4 241 364 23 8 chr4 25973183 25973312 -176355035 + L2 LINE L2 3180 3310 -3 354 45 0 0 chr4 25973774 25973818 -176354529 + (CA)n Simple_repeat Simple_repeat 1 44 0 273 293 12 12 chr4 25974526 25974608 -176353739 - MIR SINE MIR -87 121 40 1148 294 173 27 chr4 25975006 25975961 -176352386 + L2 LINE L2 2208 3310 -3 191 274 20 96 chr4 25976285 25976431 -176351916 + L2 LINE L2 3136 3270 -2 206 295 86 19 chr4 25977748 25977853 -176350494 - MIR3 SINE MIR -34 174 63 1945 141 7 3 chr4 25979533 25979837 -176348510 - AluJo SINE Alu -7 305 1 2245 89 0 13 chr4 25979849 25980152 -176348195 - AluY SINE Alu -12 299 1 368 240 88 41 chr4 25980880 25980929 -176347418 + L1MC4 LINE L1 7864 7909 -133 405 0 0 0 chr4 25980929 25980974 -176347373 + (CA)n Simple_repeat Simple_repeat 2 46 0 368 240 88 41 chr4 25980974 25981095 -176347252 + L1MC4 LINE L1 7909 8042 0 270 222 10 50 chr4 25981782 25981881 -176346466 + CT-rich Low_complexity Low_complexity 4 98 0 328 329 0 13 chr4 25982468 25982623 -176345724 + C-rich Low_complexity Low_complexity 5 157 0 233 209 17 26 chr4 25982683 25982798 -176345549 + CT-rich Low_complexity Low_complexity 1 114 0 195 239 319 35 chr4 25985115 25985228 -176343119 - MIR3 SINE MIR -62 146 2 328 301 0 0 chr4 25985803 25985886 -176342461 + (CA)n Simple_repeat Simple_repeat 2 84 0 189 315 68 93 chr4 25986099 25986261 -176342086 + MIR3 SINE MIR 5 162 -46 250 244 37 12 chr4 25987747 25987829 -176340518 + L3 LINE CR1 1156 1239 -338 279 328 92 23 chr4 25992539 25992713 -176335634 + MIR3 SINE MIR 21 206 -2 653 128 84 84 chr4 25993089 25993231 -176335116 - MER53 DNA DNA -1 188 44 2197 77 11 0 chr4 25993231 25993518 -176334829 + AluSx SINE Alu 1 290 -22 653 128 84 84 chr4 25993518 25993554 -176334793 - MER53 DNA DNA -144 45 10 1502 147 13 40 chr4 25994122 25994422 -176333925 - AluSx SINE Alu -20 292 1 1612 143 66 0 chr4 25994911 25995197 -176333150 + AluJb SINE Alu 1 305 -7 1818 88 0 119 chr4 25995201 25995519 -176332828 - AluSg SINE Alu -12 298 19 503 277 13 26 chr4 25995540 25995695 -176332652 + LTR24B LTR ERV1 417 569 -7 974 135 0 14 chr4 25995712 25995860 -176332487 + AluSq/x SINE Alu 1 146 -167 1940 110 22 0 chr4 25995860 25996132 -176332215 + AluSx SINE Alu 1 278 -34 2039 112 11 0 chr4 25996232 25996518 -176331829 + AluSg SINE Alu 11 299 -11 433 182 159 0 chr4 25996523 25996611 -176331736 - FLAM_A SINE Alu -27 115 14 1827 174 0 3 chr4 25996751 25997056 -176331291 + AluSx SINE Alu 5 308 -4 2075 100 17 0 chr4 25997059 25997358 -176330989 + AluSp SINE Alu 1 304 -9 2051 106 34 3 chr4 25997624 25997916 -176330431 - AluSq SINE Alu -12 301 1 2013 91 29 0 chr4 25998425 25998701 -176329646 + AluSx SINE Alu 9 292 -20 455 246 27 0 chr4 25999654 25999764 -176328583 - HAL1 LINE L1 -741 1766 1654 1221 141 0 0 chr4 25999837 26000028 -176328319 - AluSp SINE Alu -2 311 121 348 312 35 52 chr4 26000029 26000202 -176328145 - L1M4 LINE L1 -852 5294 5125 397 192 40 20 chr4 26000203 26000302 -176328045 + LTR24B LTR ERV1 3 103 -473 279 65 0 0 chr4 26000302 26000348 -176327999 - Alu SINE Alu 0 308 263 1896 123 10 7 chr4 26000649 26000950 -176327397 + AluSx SINE Alu 3 304 -8 2112 119 3 3 chr4 26001117 26001420 -176326927 - AluSq SINE Alu -10 303 1 2271 110 0 0 chr4 26001999 26002307 -176326040 - AluSx SINE Alu -4 308 1 187 161 0 0 chr4 26002789 26002820 -176325527 - L2 LINE L2 -16 3256 3226 313 183 86 11 chr4 26004970 26005063 -176323284 - LTR24B LTR ERV1 -473 103 4 1713 172 0 25 chr4 26005185 26005504 -176322843 - AluJb SINE Alu -1 311 1 1750 169 33 0 chr4 26005784 26006085 -176322262 - AluJo SINE Alu -1 311 1 1897 112 19 0 chr4 26006186 26006273 -176322074 + AluSx SINE Alu 40 124 -188 306 0 0 0 chr4 26006273 26006307 -176322040 + (CAA)n Simple_repeat Simple_repeat 3 36 0 1897 112 19 0 chr4 26006307 26006486 -176321861 + AluSx SINE Alu 124 311 -1 256 325 50 0 chr4 26006852 26006932 -176321415 + MIR SINE MIR 50 133 -129 564 211 158 0 chr4 26006992 26007106 -176321241 + MER45A DNA AcHobo 3 134 -44 356 330 10 0 chr4 26007223 26007326 -176321021 - L1M4 LINE L1 -1860 4286 4183 2044 110 33 3 chr4 26007332 26007632 -176320715 - AluSx SINE Alu -3 309 1 825 125 0 0 chr4 26007649 26007769 -176320578 + MER84 LTR ERVI 2 121 -386 229 170 0 0 chr4 26007890 26007937 -176320410 + L1MB4 LINE L1 6134 6180 0 1864 102 27 0 chr4 26008159 26008415 -176319932 - AluSg SINE Alu -14 296 34 279 292 45 0 chr4 26009589 26009678 -176318669 + L1ME1 LINE L1 6034 6126 -40 659 128 243 20 chr4 26009682 26009830 -176318517 - AluSx SINE Alu -25 287 107 573 233 24 14 chr4 26010083 26010245 -176318102 + MIR SINE MIR 35 205 -57 2147 120 10 0 chr4 26011548 26011856 -176316491 - AluSx SINE Alu -1 311 1 2243 103 7 0 chr4 26011861 26012171 -176316176 - AluSq SINE Alu -1 312 1 818 108 8 8 chr4 26013307 26013427 -176314920 - AluSx SINE Alu -183 130 11 1762 134 44 0 chr4 26013527 26013802 -176314545 + AluJb SINE Alu 12 298 -14 307 310 149 74 chr4 26014661 26015096 -176313251 - L1M4 LINE L1 -2842 3304 2837 2105 108 0 0 chr4 26015893 26016180 -176312167 + AluSx SINE Alu 1 287 -25 257 235 12 0 chr4 26016180 26016265 -176312082 + (TA)n Simple_repeat Simple_repeat 1 86 0 333 0 0 0 chr4 26017582 26017619 -176310728 + (TTA)n Simple_repeat Simple_repeat 2 38 0 2113 109 10 22 chr4 26018221 26018533 -176309814 - AluSx SINE Alu -4 308 1 547 246 98 58 chr4 26018598 26018786 -176309561 - L1MC4 LINE L1 -5 8037 7833 2274 88 0 0 chr4 26018786 26019081 -176309266 - AluSg SINE Alu -15 295 1 547 246 98 58 chr4 26019081 26019169 -176309178 - L1MC4 LINE L1 -209 7833 7750 186 266 138 21 chr4 26019231 26019325 -176309022 + MIR SINE MIR 20 124 -84 2248 79 7 0 chr4 26019441 26019744 -176308603 - AluSp SINE Alu -8 305 1 1531 137 29 46 chr4 26019744 26020072 -176308275 - AluSq SINE Alu 0 313 1 1440 214 10 3 chr4 26020078 26020399 -176307948 - AluJo SINE Alu 0 323 1 256 260 73 21 chr4 26020963 26021059 -176307288 - MIR SINE MIR -78 130 30 374 328 0 23 chr4 26021727 26021855 -176306492 + MIR SINE MIR 27 151 -111 364 131 16 0 chr4 26021871 26021931 -176306416 + MLT2C1 LTR ERVL 11 71 -393 323 73 0 0 chr4 26021931 26021972 -176306375 + Alu SINE Alu 1 41 -260 1492 106 22 13 chr4 26021972 26022230 -176306117 + AluSg/x SINE Alu 72 310 0 1615 192 34 3 chr4 26022231 26022554 -176305793 + MLT2C1 LTR ERVL 64 396 -1 188 301 68 0 chr4 26022637 26022710 -176305637 - MIR SINE MIR -108 154 77 246 285 70 83 chr4 26023128 26023312 -176305035 - Charlie8 DNA MER1_type -2103 314 132 1638 154 50 0 chr4 26023312 26023592 -176304755 - AluJb SINE Alu -18 294 1 246 285 70 83 chr4 26023592 26023635 -176304712 - Charlie8 DNA MER1_type -2285 132 90 353 274 183 5 chr4 26023861 26024037 -176304310 - L1MC4a LINE L1 -346 5824 5691 1540 116 0 13 chr4 26024083 26024308 -176304039 + AluSg/x SINE Alu 86 307 -5 1290 83 0 47 chr4 26024329 26024522 -176303825 - AluY SINE Alu -14 297 114 1352 164 9 0 chr4 26024622 26024841 -176303506 + Tigger3(Golem) DNA MER2_type 2807 3027 -2 1823 142 49 9 chr4 26024850 26025175 -176303172 - MER47A DNA MER2_type 0 366 29 2132 123 16 0 chr4 26025176 26025484 -176302863 + AluSq SINE Alu 1 313 0 258 167 0 0 chr4 26025506 26025548 -176302799 - MER47A DNA MER2_type -324 42 1 1746 159 5 101 chr4 26025548 26025673 -176302674 + L1MC4 LINE L1 6695 6830 -1212 1659 173 6 28 chr4 26025673 26025991 -176302356 + AluJo SINE Alu 1 311 -1 1746 159 5 101 chr4 26025991 26026279 -176302068 + L1MC4 LINE L1 6830 7068 -974 200 358 64 0 chr4 26026775 26026884 -176301463 + MIR SINE MIR 48 163 -99 2022 128 3 3 chr4 26026938 26027244 -176301103 + AluSx SINE Alu 5 310 -2 228 35 0 0 chr4 26028165 26028194 -176300153 + (CAGGG)n Simple_repeat Simple_repeat 1 29 0 666 306 138 25 chr4 26028253 26028687 -176299660 + L2 LINE L2 2826 3308 -5 1356 154 5 9 chr4 26028749 26028970 -176299377 + AluSx SINE Alu 1 220 -92 1976 146 3 23 chr4 26032520 26032822 -176295525 - AluSx SINE Alu -10 302 7 1858 152 45 0 chr4 26032830 26033120 -176295227 - AluJb SINE Alu -9 303 1 334 326 23 8 chr4 26038183 26038315 -176290032 - L2 LINE L2 -6 3307 3174 200 238 0 0 chr4 26038482 26038524 -176289823 - MIR SINE MIR -110 152 111 346 289 19 0 chr4 26039409 26039513 -176288834 + L2 LINE L2 3207 3312 -1 216 214 0 0 chr4 26039571 26039627 -176288720 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 640 123 18 0 chr4 26040308 26040422 -176287925 + CT-rich Low_complexity Low_complexity 3 118 0 1869 160 28 3 chr4 26040422 26040709 -176287638 - AluJb SINE Alu -18 294 1 1843 133 51 17 chr4 26040709 26041002 -176287345 - AluJb SINE Alu -9 303 1 297 320 92 7 chr4 26042134 26042287 -176286060 + MIR SINE MIR 20 185 -77 2371 112 0 3 chr4 26042772 26043085 -176285262 - AluSx SINE Alu 0 312 1 466 355 116 20 chr4 26043724 26044121 -176284226 - L2 LINE L2 -1 3312 2878 2257 100 3 17 chr4 26044194 26044494 -176283853 - AluSx SINE Alu -16 296 1 1696 141 7 19 chr4 26044499 26044769 -176283578 - AluJb SINE Alu -25 287 21 302 342 18 0 chr4 26045927 26046038 -176282309 - L2 LINE L2 -2048 1266 1154 827 218 18 0 chr4 26046198 26046363 -176281984 - FRAM SINE Alu -12 164 1 2557 151 44 13 chr4 26046743 26047268 -176281079 + L1MB7 LINE L1 5644 6184 0 2434 93 3 3 chr4 26047896 26048208 -176280139 + AluSp SINE Alu 1 312 -1 2143 119 33 6 chr4 26049578 26049915 -176278432 + MER7A DNA MER2_type 2 345 -1 194 336 55 55 chr4 26049918 26049937 -176278410 - MIR3 SINE MIR -41 167 149 1856 141 14 27 chr4 26049937 26050234 -176278113 - AluJo SINE Alu -19 293 1 194 336 55 55 chr4 26050234 26050342 -176278005 - MIR3 SINE MIR -58 150 40 408 194 0 0 chr4 26050729 26050811 -176277536 + AluS SINE Alu 1 64 -237 1204 133 80 5 chr4 26050911 26051099 -176277248 + AluJb SINE Alu 96 297 -15 2505 85 0 0 chr4 26051289 26051594 -176276753 + AluY SINE Alu 1 305 -6 498 241 40 14 chr4 26051921 26052086 -176276261 - MIR SINE MIR -56 206 34 219 348 71 21 chr4 26052122 26052263 -176276084 - MIR SINE MIR -6 256 109 2152 98 33 16 chr4 26052955 26053321 -176275026 + L1PA15 LINE L1 5794 6165 0 2359 86 6 13 chr4 26053360 26053493 -176274854 + AluY SINE Alu 1 133 -178 2580 70 0 0 chr4 26053493 26053794 -176274553 + AluY SINE Alu 1 301 -10 2359 86 6 13 chr4 26053794 26053973 -176274374 + AluY SINE Alu 133 311 0 1733 175 13 26 chr4 26056396 26056699 -176271648 - AluJo SINE Alu -13 299 1 2121 149 0 0 chr4 26057235 26057537 -176270810 - AluSx SINE Alu -10 302 1 2158 127 0 0 chr4 26058420 26058728 -176269619 - AluSx SINE Alu 0 308 1 1667 182 13 26 chr4 26059020 26059322 -176269025 - AluJo SINE Alu -10 302 5 1708 133 8 0 chr4 26060002 26060243 -176268104 - AluSx SINE Alu -69 243 1 1520 112 62 4 chr4 26060271 26060531 -176267816 + L1MB3 LINE L1 5900 6174 -9 2179 125 20 0 chr4 26060583 26060886 -176267461 + AluSx SINE Alu 1 309 -3 191 261 22 0 chr4 26063204 26063250 -176265097 + MIR SINE MIR 216 262 0 206 261 54 65 chr4 26063865 26063957 -176264390 + MIR SINE MIR 86 176 -86 2160 104 40 0 chr4 26063961 26064259 -176264088 - AluSx SINE Alu -2 310 1 317 269 67 17 chr4 26064299 26064418 -176263929 + MIR SINE MIR 16 140 -68 181 229 292 0 chr4 26064907 26065003 -176263344 + MER5A DNA MER1_type 42 165 -24 242 319 187 0 chr4 26065069 26065160 -176263187 + MIR SINE MIR 38 145 -63 280 267 23 17 chr4 26065252 26065428 -176262919 + CT-rich Low_complexity Low_complexity 2 178 0 225 0 0 0 chr4 26065682 26065707 -176262640 + (TTTTTA)n Simple_repeat Simple_repeat 2 26 0 2215 104 4 0 chr4 26066628 26067026 -176261321 - AluSx SINE Alu 0 399 1 1865 72 0 0 chr4 26068337 26068559 -176259788 - AluY SINE Alu 0 311 90 1836 84 63 0 chr4 26068659 26068898 -176259449 - AluY SINE Alu -57 254 1 855 178 11 52 chr4 26068959 26069133 -176259214 + AluJb SINE Alu 125 291 -21 2291 119 3 0 chr4 26069747 26070050 -176258297 - AluSx SINE Alu -7 305 2 2152 123 3 0 chr4 26070793 26071086 -176257261 - AluSx SINE Alu -18 294 1 842 212 17 6 chr4 26071288 26071467 -176256880 + MER5A DNA MER1_type 3 183 -6 3621 158 68 6 chr4 26071521 26072228 -176256119 - L1MB7 LINE L1 -16 6168 5418 2285 102 23 0 chr4 26072778 26073083 -176255264 - AluSp SINE Alu -1 312 1 2386 89 7 0 chr4 26073581 26073884 -176254463 - AluSq SINE Alu -8 305 1 223 282 35 12 chr4 26074994 26075079 -176253268 - MIR SINE MIR -99 163 77 245 310 28 0 chr4 26078183 26078254 -176250093 - MIR SINE MIR -124 138 66 2606 60 3 0 chr4 26078691 26078992 -176249355 + AluSp SINE Alu 1 302 -11 286 224 208 27 chr4 26079329 26079512 -176248835 - L1ME4a LINE L1 -101 6020 5805 266 342 0 0 chr4 26082330 26082406 -176245941 + MIR SINE MIR 47 122 -140 276 343 105 12 chr4 26082415 26082587 -176245760 + MIR SINE MIR 66 253 -9 578 305 135 17 chr4 26083183 26083664 -176244683 + L2 LINE L2 2738 3270 -2 195 129 0 0 chr4 26084374 26084405 -176243942 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 319 274 9 18 chr4 26084446 26084559 -176243788 + (CAGAGA)n Simple_repeat Simple_repeat 2 113 0 249 33 0 0 chr4 26086759 26086789 -176241558 + (CTCA)n Simple_repeat Simple_repeat 2 31 0 256 319 109 0 chr4 26086880 26087018 -176241329 + L2 LINE L2 722 874 -2440 827 285 135 92 chr4 26087514 26088774 -176239573 + L2 LINE L2 1940 3263 -50 230 335 86 29 chr4 26088787 26088996 -176239351 + MLT1L LTR MaLR 6 226 -389 634 70 0 0 chr4 26089029 26089115 -176239232 + AluJ/FRAM SINE Alu 221 306 -6 943 218 47 8 chr4 26089118 26089360 -176238987 + LTR16A1 LTR ERVL 207 457 0 414 57 0 0 chr4 26089640 26089693 -176238654 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 2093 119 0 0 chr4 26089911 26090237 -176238110 + AluSx SINE Alu 1 326 0 1811 140 14 3 chr4 26090264 26090556 -176237791 + AluJo SINE Alu 1 295 -17 318 26 0 0 chr4 26090814 26090853 -176237494 + (CA)n Simple_repeat Simple_repeat 2 40 0 397 301 81 84 chr4 26091023 26091573 -176236774 + L1M3c LINE L1 1728 3899 -2949 2110 106 0 26 chr4 26091600 26091902 -176236445 - AluSx SINE Alu -18 294 1 421 270 123 19 chr4 26091904 26092115 -176236232 + HAL1b LINE L1 413 645 -703 610 333 81 59 chr4 26092158 26092237 -176236110 + L1M4c LINE L1 2053 2129 -4417 2093 130 0 0 chr4 26092237 26092536 -176235811 + AluSx SINE Alu 1 299 -13 610 333 81 59 chr4 26092536 26092552 -176235795 + L1M4c LINE L1 2129 2143 -4403 1770 174 3 10 chr4 26092552 26092863 -176235484 + AluJo SINE Alu 1 309 -3 610 333 81 59 chr4 26092863 26093310 -176235037 + L1M4c LINE L1 2143 2649 -3897 4182 194 13 20 chr4 26093328 26094072 -176234275 + L1P LINE L1 4263 5000 -1146 1775 177 0 10 chr4 26094072 26094377 -176233970 - AluJb SINE Alu -10 302 1 4182 194 13 20 chr4 26094377 26094629 -176233718 + L1P LINE L1 5000 5252 -894 226 296 11 23 chr4 26095580 26095668 -176232679 - L1M4b LINE L1 -6341 518 432 2269 94 7 0 chr4 26095816 26096124 -176232223 + AluSp SINE Alu 1 310 -3 953 283 123 29 chr4 26097115 26097848 -176230499 + L2 LINE L2 2500 3305 -8 1422 226 61 53 chr4 26098615 26099110 -176229237 + MLT1D LTR MaLR 1 418 -10 215 324 93 19 chr4 26100192 26100300 -176228047 + MIR SINE MIR 18 133 -75 206 239 0 15 chr4 26103107 26103174 -176225173 + (CA)n Simple_repeat Simple_repeat 1 66 0 2248 62 24 3 chr4 26103490 26103782 -176224565 + AluSp SINE Alu 2 299 -14 432 244 16 8 chr4 26104134 26104257 -176224090 + Charlie8 DNA MER1_type 46 169 -2248 2257 65 48 0 chr4 26104401 26104691 -176223656 + AluY SINE Alu 1 304 -7 2342 95 0 0 chr4 26106765 26107070 -176221277 + AluSq SINE Alu 1 305 -8 279 265 247 19 chr4 26107638 26107800 -176220547 + MIR SINE MIR 63 261 -1 21 36 0 0 chr4 26109903 26109931 -176218416 + GC_rich Low_complexity Low_complexity 1 28 0 2200 82 27 0 chr4 26110499 26110793 -176217554 - AluSp SINE Alu 0 313 12 262 208 13 26 chr4 26110809 26110886 -176217461 - L2 LINE L2 -301 2971 2896 387 276 24 0 chr4 26110981 26111108 -176217239 + MLT1K LTR MaLR 184 313 -275 323 279 253 13 chr4 26111675 26111829 -176216518 + L2 LINE L2 3123 3313 0 * 470 267 82 36 chr4 26111818 26112013 -176216334 - MIR SINE MIR -3 259 56 902 147 0 22 chr4 26112041 26112177 -176216170 + FLAM_C SINE Alu 1 133 0 1369 208 32 32 chr4 26112192 26112319 -176216028 + AluJo SINE Alu 1 127 -185 225 65 0 0 chr4 26112319 26112350 -176215997 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 1369 208 32 32 chr4 26112350 26112530 -176215817 + AluJo SINE Alu 126 308 -4 2411 181 47 74 chr4 26112648 26113282 -176215065 - LTR34 LTR ERV1 -4 695 79 240 146 0 6 chr4 26113341 26113397 -176214950 + Alu SINE Alu 1 37 -265 246 0 29 0 chr4 26113445 26113479 -176214868 + AluY SINE Alu 18 52 -248 596 327 16 65 chr4 26113615 26113936 -176214411 - L2 LINE L2 -1 3271 2967 239 222 0 0 chr4 26114646 26114691 -176213656 + L2 LINE L2 3269 3313 0 210 171 0 24 chr4 26114697 26114738 -176213609 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 203 273 36 0 chr4 26115980 26116035 -176212312 + MIR SINE MIR 81 137 -71 2277 93 3 7 chr4 26116998 26117308 -176211039 + AluSx SINE Alu 1 309 -3 429 203 203 0 chr4 26117474 26117602 -176210745 - MER5A DNA MER1_type -35 154 1 520 199 69 8 chr4 26117603 26117734 -176210613 + L2 LINE L2 2667 2805 -509 183 273 18 0 chr4 26119001 26119056 -176209291 - MIR SINE MIR -6 256 201 365 184 0 11 chr4 26119086 26119173 -176209174 + MLT1C LTR MaLR 34 119 -348 5216 69 24 22 chr4 26119173 26119430 -176208917 - L1P LINE L1 -1635 4511 4256 2278 72 3 3 chr4 26119430 26119723 -176208624 - AluY SINE Alu -14 297 5 5216 69 24 22 chr4 26119723 26120288 -176208059 - L1P LINE L1 -1890 4256 3687 1493 64 59 0 chr4 26120288 26120507 -176207840 + L1P3 LINE L1 5446 5677 -477 2068 137 0 19 chr4 26120507 26120644 -176207703 + AluSx SINE Alu 1 139 -173 2225 101 3 7 chr4 26120644 26120950 -176207397 + AluSp SINE Alu 1 305 -8 2068 137 0 19 chr4 26120950 26121127 -176207220 + AluSx SINE Alu 139 309 -3 817 225 67 10 chr4 26121129 26121338 -176207009 + MLT1C LTR MaLR 213 433 -34 407 277 54 8 chr4 26121367 26121497 -176206850 - MIR3 SINE MIR -62 146 11 2086 119 0 7 chr4 26122264 26122566 -176205781 - AluSx SINE Alu -12 300 1 843 124 31 0 chr4 26122865 26122994 -176205353 - FRAM SINE Alu -3 173 41 705 265 84 20 chr4 26123347 26123708 -176204639 + LTR16C LTR ERVL 61 491 0 414 328 0 6 chr4 26123759 26123939 -176204408 + (CA)n Simple_repeat Simple_repeat 1 179 0 674 298 113 16 chr4 26125265 26125644 -176202703 - L2 LINE L2 -4 3268 2853 298 269 77 0 chr4 26125836 26125940 -176202407 + MER5A DNA MER1_type 51 162 -27 1236 136 0 6 chr4 26126150 26126326 -176202021 + FAM SINE Alu 1 175 0 1841 138 36 13 chr4 26126389 26126505 -176201842 + AluSx SINE Alu 1 113 -199 219 36 0 0 chr4 26126505 26126533 -176201814 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1841 138 36 13 chr4 26126533 26126721 -176201626 + AluSx SINE Alu 113 312 0 233 245 314 0 chr4 26126872 26126974 -176201373 + MIR SINE MIR 9 142 -120 227 256 58 58 chr4 26127334 26127399 -176200948 - MIR SINE MIR -79 129 62 1097 172 39 10 chr4 26127399 26127602 -176200745 - MER3 DNA MER1_type 0 209 1 436 261 7 12 chr4 26127611 26127739 -176200608 - MER5B DNA MER1_type 0 178 61 983 271 199 16 chr4 26128868 26129296 -176199051 - L2 LINE L2 0 3313 2808 355 363 39 11 chr4 26129371 26129553 -176198794 - MIR SINE MIR -68 194 8 2129 124 3 16 chr4 26129819 26130188 -176198159 + AluSq SINE Alu 1 313 0 2028 149 0 0 chr4 26130606 26130907 -176197440 - AluSx SINE Alu -11 301 1 1936 115 98 3 chr4 26130907 26131212 -176197135 - MER4B LTR ERV1 -245 365 32 2128 95 58 10 chr4 26131247 26131541 -176196806 - AluSc SINE Alu -1 308 1 2391 88 3 50 chr4 26131563 26131905 -176196442 - MER4B-int LTR ERV1 0 6758 6433 1643 115 0 0 chr4 26131903 26132121 -176196226 - AluSg/x SINE Alu -13 297 80 549 320 77 0 chr4 26132357 26132579 -176195768 - MIR SINE MIR -4 258 20 703 255 39 20 chr4 26133944 26134148 -176194199 + MIR SINE MIR 17 224 -38 295 253 0 71 chr4 26134227 26134326 -176194021 - MIR SINE MIR -65 197 106 438 319 158 27 chr4 26135078 26135413 -176192934 + L3 LINE CR1 1083 1461 -116 274 299 19 64 chr4 26136439 26136596 -176191751 - MIR SINE MIR -56 206 57 266 250 29 103 chr4 26137063 26137199 -176191148 - L2 LINE L2 0 3313 3188 553 301 121 0 chr4 26137455 26137661 -176190686 + L2 LINE L2 2840 3070 -243 1100 128 62 52 chr4 26137662 26137873 -176190474 + MER7A DNA MER2_type 1 211 -135 279 266 168 21 chr4 26138149 26138292 -176190055 + MIR3 SINE MIR 24 187 -21 471 154 273 0 chr4 26140800 26140910 -176187437 - Charlie4 DNA MER1_type 0 1961 1822 190 244 50 144 chr4 26141341 26141501 -176186846 - L2 LINE L2 -36 3277 3133 261 0 0 0 chr4 26141664 26141693 -176186654 + (CA)n Simple_repeat Simple_repeat 2 30 0 441 176 0 0 chr4 26141694 26141762 -176186585 + Tigger2 DNA MER2_type 2 69 -2649 * 2608 125 58 23 chr4 26141752 26141962 -176186385 + Tigger2 DNA MER2_type 2273 2474 -244 1861 145 3 7 chr4 26141962 26142258 -176186089 - AluJb SINE Alu -17 295 1 2608 125 58 23 chr4 26142258 26142478 -176185869 + Tigger2 DNA MER2_type 2474 2718 0 297 327 91 33 chr4 26142689 26142890 -176185457 + MIR SINE MIR 16 229 -33 334 288 36 9 chr4 26143098 26143209 -176185138 + MER103 DNA DNA 4 117 -49 189 245 0 0 chr4 26144072 26144121 -176184226 + GA-rich Low_complexity Low_complexity 4 52 0 437 288 139 53 chr4 26144635 26144972 -176183375 - L2 LINE L2 0 3313 2948 199 171 0 0 chr4 26145584 26145619 -176182728 + MIR SINE MIR 222 256 -6 331 234 39 94 chr4 26147053 26147181 -176181166 - L2 LINE L2 0 3313 3193 184 330 26 26 chr4 26147465 26147580 -176180767 + L3b LINE CR1 1109 1223 -360 180 282 295 0 chr4 26147700 26147778 -176180569 + MIR SINE MIR 48 148 -114 215 100 0 25 chr4 26147851 26147891 -176180456 + (CAT)n Simple_repeat Simple_repeat 3 41 0 318 274 81 24 chr4 26147977 26148101 -176180246 + MIR3 SINE MIR 13 143 -65 1216 199 246 40 chr4 26148133 26148514 -176179833 + MLT2B2 LTR ERVL 1 302 -213 252 0 0 0 chr4 26148514 26148542 -176179805 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 258 32 0 0 chr4 26148541 26148572 -176179775 + (TG)n Simple_repeat Simple_repeat 2 32 0 1216 199 246 40 chr4 26148542 26148617 -176179730 + MLT2B2 LTR ERVL 302 515 0 2244 81 3 3 chr4 26149587 26149871 -176178476 - AluY SINE Alu -14 297 14 599 297 15 25 chr4 26149871 26150073 -176178274 + MIR SINE MIR 50 249 -13 552 30 0 0 chr4 26150400 26150466 -176177881 + LTR10D LTR ERV1 2 67 -446 350 340 45 13 chr4 26151713 26151869 -176176478 - MIR3 SINE MIR -18 190 30 2411 77 3 29 chr4 26151933 26152246 -176176101 - AluSq SINE Alu -8 305 1 1841 208 9 9 chr4 26152577 26152918 -176175429 - MER58B DNA MER1_type 0 341 1 1328 138 69 0 chr4 26155298 26155501 -176172846 - AluJb SINE Alu -10 302 86 412 291 43 7 chr4 26155951 26156092 -176172255 + MIR3 SINE MIR 1 146 -62 1712 175 27 0 chr4 26156104 26156396 -176171951 + AluJo SINE Alu 5 304 -8 394 203 0 0 chr4 26156612 26156681 -176171666 - L2 LINE L2 0 3313 3245 272 242 0 22 chr4 26158688 26158779 -176169568 + GA-rich Low_complexity Low_complexity 4 92 0 2806 161 21 0 chr4 26159422 26159844 -176168503 - MSTB1 LTR MaLR -1 431 1 193 229 0 66 chr4 26159893 26159954 -176168393 + L2 LINE L2 3175 3231 -82 749 281 113 0 chr4 26160013 26160244 -176168103 - MIR SINE MIR 0 262 6 425 275 84 39 chr4 26160294 26160472 -176167875 - MIR SINE MIR -71 191 6 24 32 0 0 chr4 26161059 26161090 -176167257 + AT_rich Low_complexity Low_complexity 1 31 0 716 323 30 4 chr4 26161889 26162124 -176166223 + MIR SINE MIR 13 253 -9 406 200 24 146 chr4 26162135 26162205 -176166142 - MIR SINE MIR -105 157 116 1998 83 0 93 chr4 26162205 26162547 -176165800 + AluSx SINE Alu 1 313 0 406 200 24 146 chr4 26162547 26162640 -176165707 - MIR SINE MIR -146 116 13 2151 109 7 3 chr4 26162956 26163259 -176165088 + AluSg SINE Alu 3 306 -4 458 243 0 122 chr4 26163751 26163899 -176164448 - MIR SINE MIR -70 138 9 501 263 193 29 chr4 26164622 26164895 -176163452 + MLT1L LTR MaLR 208 525 -90 1068 214 142 36 chr4 26164895 26165262 -176163085 - MLT1F1 LTR MaLR 0 567 82 1153 178 13 44 chr4 26165262 26165487 -176162860 - MER20 DNA MER1_type -1 218 1 1068 214 142 36 chr4 26165487 26165568 -176162779 - MLT1F1 LTR MaLR -485 82 11 347 266 11 0 chr4 26165578 26165672 -176162675 + MLT1L LTR MaLR 521 615 0 300 53 0 0 chr4 26165836 26165874 -176162473 + (CA)n Simple_repeat Simple_repeat 1 38 0 2478 89 0 0 chr4 26167147 26167451 -176160896 + AluSg SINE Alu 1 304 -6 2980 88 0 3 chr4 26168042 26168407 -176159940 - THE1B LTR MaLR 0 364 1 920 109 0 7 chr4 26168430 26168567 -176159780 - L1PB1 LINE L1 0 6151 6016 487 221 25 33 chr4 26168652 26168774 -176159573 + MIR SINE MIR 103 223 -39 584 179 38 0 chr4 26168825 26168931 -176159416 + L2 LINE L2 3183 3292 -21 339 296 65 41 chr4 26169664 26169833 -176158514 - MIR SINE MIR -12 250 78 440 282 62 44 chr4 26170844 26171071 -176157276 - MIR SINE MIR -12 250 20 286 213 74 65 chr4 26172330 26172438 -176155909 - MIR SINE MIR -139 123 15 181 208 181 0 chr4 26172481 26172553 -176155794 + MIR SINE MIR 140 224 -38 336 152 48 9 chr4 26173956 26174061 -176154286 + (TA)n Simple_repeat Simple_repeat 2 110 0 327 146 0 0 chr4 26174285 26174340 -176154007 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 225 178 0 0 chr4 26174344 26174389 -176153958 - LTR66 LTR ERVL -171 439 395 233 108 0 242 chr4 26174394 26174514 -176153833 - L1MC4 LINE L1 -1339 6703 6613 * 267 290 0 11 chr4 26174422 26174515 -176153832 + L1MC4 LINE L1 6614 6705 -1337 728 169 7 0 chr4 26174515 26174651 -176153696 + MER53 DNA DNA 20 156 -33 271 227 248 21 chr4 26175014 26175155 -176153192 - MIR SINE MIR -32 230 58 287 268 108 76 chr4 26175499 26175656 -176152691 - MIR SINE MIR -95 167 6 943 273 56 4 chr4 26176550 26176799 -176151548 + MIR SINE MIR 1 262 0 238 118 0 0 chr4 26176845 26176879 -176151468 + MLT1I LTR MaLR 370 403 -6 26 0 0 0 chr4 26177624 26177650 -176150697 + AT_rich Low_complexity Low_complexity 1 26 0 387 0 0 0 chr4 26178620 26178663 -176149684 + (T)n Simple_repeat Simple_repeat 1 43 0 853 269 68 64 chr4 26178934 26179373 -176148974 + MLT1J LTR MaLR 17 457 -54 265 329 0 0 chr4 26179700 26179782 -176148565 - MIR SINE MIR -86 176 95 425 188 0 0 chr4 26179989 26180074 -176148273 - L1MA7 LINE L1 0 6291 6207 223 296 56 74 chr4 26180105 26180213 -176148134 + L2 LINE L2 3164 3269 -3 814 258 50 21 chr4 26182654 26182894 -176145453 - MIR SINE MIR -2 260 14 447 323 8 0 chr4 26182956 26183086 -176145261 + MER94 DNA DNA 3 133 -1 458 252 16 63 chr4 26183203 26183330 -176145017 - L2 LINE L2 -6 3266 3146 228 204 0 0 chr4 26183399 26183453 -176144894 - LTR66 LTR ERVL -159 451 398 * 232 143 0 0 chr4 26183421 26183463 -176144884 + LTR66 LTR ERVL 398 439 -171 424 289 46 23 chr4 26183578 26183764 -176144583 + MIR SINE MIR 2 185 -66 2253 104 3 0 chr4 26183826 26184115 -176144232 + AluSp SINE Alu 2 291 -22 216 345 24 12 chr4 26184429 26184513 -176143834 - MIR SINE MIR -72 136 52 935 264 37 0 chr4 26184855 26185071 -176143276 - MER58A DNA MER1_type 0 224 1 2168 138 0 0 chr4 26186304 26186615 -176141732 + AluSx SINE Alu 1 311 -1 313 319 64 11 chr4 26187090 26187184 -176141163 - MIR SINE MIR -58 150 52 405 341 122 33 chr4 26187352 26187872 -176140475 - L2 LINE L2 -44 3269 2714 1161 123 0 0 chr4 26187886 26188041 -176140306 - FRAM SINE Alu -23 153 1 994 308 87 26 chr4 26188041 26188548 -176139799 - L2 LINE L2 -593 2721 2184 604 239 6 31 chr4 26188576 26188739 -176139608 - L1ME LINE L1 -5865 205 47 1037 259 26 83 chr4 26188825 26189331 -176139016 + L1ME LINE L1 396 872 -5198 2148 43 0 8 chr4 26189381 26189636 -176138711 - AluY SINE Alu 0 311 59 1250 128 0 24 chr4 26190321 26190532 -176137815 - AluY SINE Alu -105 206 1 1865 87 0 21 chr4 26190537 26190779 -176137568 + AluY SINE Alu 53 289 -22 566 246 60 0 chr4 26190805 26190972 -176137375 + L1ME LINE L1 899 1075 -5008 297 274 48 24 chr4 26190990 26191114 -176137233 + MER65B LTR ERV1 1 127 -404 279 247 123 0 chr4 26191560 26191641 -176136706 - L2 LINE L2 -1154 2160 2070 653 264 107 19 chr4 26192787 26193126 -176135221 + L1ME1 LINE L1 5501 5864 -302 1427 208 69 58 chr4 26193365 26193726 -176134621 + MLT1A1 LTR MaLR 1 365 0 403 281 51 66 chr4 26194287 26194483 -176133864 + MER117 DNA MER1_type 1 193 -4 1272 159 27 36 chr4 26194725 26194945 -176133402 + MER20 DNA MER1_type 1 218 -1 464 269 130 6 chr4 26195748 26195925 -176132422 + MIR SINE MIR 45 241 -21 597 178 82 48 chr4 26196149 26196295 -176132052 - MIR SINE MIR -42 220 70 271 260 26 0 chr4 26196394 26196471 -176131876 - L2 LINE L2 -1 3312 3234 360 0 0 0 chr4 26196687 26196727 -176131620 + (A)n Simple_repeat Simple_repeat 1 40 0 272 181 19 124 chr4 26197399 26197504 -176130843 + MIR3 SINE MIR 111 204 -4 207 0 0 0 chr4 26198122 26198145 -176130202 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1632 169 17 17 chr4 26198196 26198498 -176129849 + AluJo SINE Alu 1 302 -10 589 268 38 34 chr4 26201724 26201933 -176126414 - MER63A DNA MER1_type 0 210 1 1567 108 90 25 chr4 26202415 26202692 -176125655 + LTR7 LTR ERV1 1 295 -155 189 196 0 0 chr4 26203207 26203258 -176125089 + CT-rich Low_complexity Low_complexity 1 51 0 405 0 0 0 chr4 26204083 26204128 -176124219 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 233 341 0 0 chr4 26206416 26206507 -176121840 + (TA)n Simple_repeat Simple_repeat 2 92 0 282 337 0 0 chr4 26206513 26206602 -176121745 + MIR SINE MIR 174 262 0 243 288 17 0 chr4 26206625 26206684 -176121663 + L2 LINE L2 3250 3309 -4 259 331 0 57 chr4 26206709 26206833 -176121514 - MIR SINE MIR -126 136 20 231 209 0 0 chr4 26207385 26207428 -176120919 + L1MC3 LINE L1 7384 7426 -359 364 241 7 83 chr4 26211190 26211335 -176117012 - MIR SINE MIR -48 214 81 879 255 54 37 chr4 26211695 26211991 -176116356 - MER113 DNA MER1_type? -122 399 95 320 229 0 48 chr4 26211991 26212074 -176116273 - MER116 DNA Mariner -1 79 1 879 255 54 37 chr4 26212074 26212126 -176116221 - MER113 DNA MER1_type? -426 95 45 4380 57 2 2 chr4 26212497 26213022 -176115325 - L1PA8 LINE L1 0 6172 5648 2143 115 0 32 chr4 26213392 26213704 -176114643 + AluSx SINE Alu 1 302 -10 385 283 12 81 chr4 26213889 26214003 -176114344 + MIR3 SINE MIR 46 146 -62 545 244 71 36 chr4 26214003 26214171 -176114176 - MER5B DNA MER1_type 0 178 5 385 283 12 81 chr4 26214171 26214229 -176114118 + MIR3 SINE MIR 146 206 -2 574 235 117 31 chr4 26214395 26214557 -176113790 + MIR SINE MIR 15 190 -72 438 287 42 18 chr4 26215156 26215323 -176113024 + L1ME4a LINE L1 5951 6121 0 1539 98 5 0 chr4 26216103 26216307 -176112040 + L1PA13 LINE L1 5958 6162 -1 2129 207 14 7 chr4 26216307 26216737 -176111610 + L1M4 LINE L1 5324 5756 -422 423 237 123 9 chr4 26217275 26217389 -176110958 - L2 LINE L2 -4 3309 3183 2111 127 0 0 chr4 26219788 26220098 -176108249 + AluSx SINE Alu 1 310 0 14460 91 10 8 chr4 26220413 26222440 -176105907 + HERVH LTR ERV1 958 2987 -4726 816 145 41 0 chr4 26222434 26222579 -176105768 + HERVH LTR ERV1 3140 3290 -4423 * 950 137 0 0 chr4 26222578 26222717 -176105630 + HERVH LTR ERV1 3500 3638 -4075 * 1224 150 0 1 chr4 26222707 26223068 -176105279 + HERVH LTR ERV1 4744 5149 -2564 1194 118 88 10 chr4 26223069 26223273 -176105074 + HERVH LTR ERV1 5600 5819 -1894 * 2620 71 48 13 chr4 26223271 26223650 -176104697 + HERVH LTR ERV1 7322 7713 0 1806 100 43 9 chr4 26223650 26224038 -176104309 + LTR7 LTR ERV1 1 448 -2 340 325 59 13 chr4 26225151 26225428 -176102919 + L2 LINE L2 2743 3031 -241 196 295 164 0 chr4 26225552 26225613 -176102734 + L2 LINE L2 3212 3282 -31 561 303 87 30 chr4 26225868 26225957 -176102390 - MIR SINE MIR -10 252 169 1062 240 90 90 chr4 26225957 26226512 -176101835 + MLT1H1 LTR MaLR 1 555 0 561 303 87 30 chr4 26226512 26226653 -176101694 - MIR SINE MIR -93 169 9 799 296 103 5 chr4 26227050 26227418 -176100929 + L2 LINE L2 2910 3313 0 23 0 0 0 chr4 26227588 26227611 -176100736 + AT_rich Low_complexity Low_complexity 1 23 0 1860 60 0 0 chr4 26227611 26227828 -176100519 - L1PA8 LINE L1 -17 6155 5939 202 27 0 54 chr4 26227937 26227974 -176100373 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 932 155 0 0 chr4 26227976 26228105 -176100242 - FLAM_C SINE Alu -4 129 1 252 344 0 11 chr4 26228247 26228337 -176100010 + L2 LINE L2 3224 3312 -1 246 311 30 19 chr4 26228575 26228704 -176099643 + MIR SINE MIR 20 150 -62 2179 117 0 7 chr4 26228787 26229086 -176099261 + AluSx SINE Alu 1 297 -15 26 64 0 0 chr4 26229150 26229197 -176099150 + AT_rich Low_complexity Low_complexity 1 47 0 2040 141 0 3 chr4 26229479 26229792 -176098555 + AluSx SINE Alu 1 312 0 613 171 31 194 chr4 26229829 26230051 -176098296 - MER5A DNA MER1_type 0 189 4 266 192 269 13 chr4 26230061 26230139 -176098208 - MIR SINE MIR -55 207 110 222 325 0 24 chr4 26230150 26230233 -176098114 + MIR SINE MIR 54 134 -128 198 280 0 0 chr4 26230959 26231009 -176097338 + MIR SINE MIR 201 250 -12 277 335 114 44 chr4 26231028 26231255 -176097092 - MIR SINE MIR -19 243 1 23 0 0 0 chr4 26231714 26231737 -176096610 + AT_rich Low_complexity Low_complexity 1 23 0 268 250 188 46 chr4 26232241 26232609 -176095738 - L1ME4a LINE L1 -3 6118 5699 762 169 0 24 chr4 26232615 26232739 -176095608 + FLAM_A SINE Alu 7 127 -15 33 0 0 0 chr4 26232727 26232760 -176095587 + AT_rich Low_complexity Low_complexity 1 33 0 * 413 294 85 13 chr4 26232760 26232913 -176095434 - L1ME4a LINE L1 -404 5717 5554 377 280 88 57 chr4 26233150 26233343 -176095004 - L2 LINE L2 0 3272 3074 357 257 62 69 chr4 26233452 26233596 -176094751 - MIR SINE MIR -57 205 63 1081 198 120 3 chr4 26234737 26235020 -176093327 - L1MB2 LINE L1 -8 6163 5848 189 0 0 0 chr4 26235020 26235041 -176093306 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 207 0 0 0 chr4 26235040 26235063 -176093284 + (TA)n Simple_repeat Simple_repeat 1 23 0 261 0 0 0 chr4 26235170 26235199 -176093148 + (CA)n Simple_repeat Simple_repeat 2 30 0 315 67 0 0 chr4 26235199 26235244 -176093103 - L1MB2 LINE L1 -350 5833 5789 2320 82 3 0 chr4 26235663 26235969 -176092378 - AluY SINE Alu -4 307 1 207 167 0 0 chr4 26237138 26237180 -176091167 + (TA)n Simple_repeat Simple_repeat 1 42 0 631 324 83 25 chr4 26237303 26237701 -176090646 - L2 LINE L2 -1 3312 2892 340 258 108 0 chr4 26237710 26237803 -176090544 + L2 LINE L2 3204 3306 -7 225 355 19 9 chr4 26237823 26237930 -176090417 - L2 LINE L2 -425 2889 2782 213 376 55 9 chr4 26238027 26238136 -176090211 + L2 LINE L2 3154 3267 -5 454 198 4 203 chr4 26238143 26238370 -176089977 - MIR SINE MIR -15 247 66 1059 215 30 116 chr4 26239168 26239564 -176088783 + MLT1A1 LTR MaLR 4 365 0 14258 195 57 9 chr4 26239687 26241438 -176086909 - L1PB1 LINE L1 0 6867 5201 186 71 0 0 chr4 26241438 26241466 -176086881 + (TTTAG)n Simple_repeat Simple_repeat 3 30 0 14258 195 57 9 chr4 26241466 26246154 -176082193 - L1PB1 LINE L1 -1666 5201 105 505 118 26 0 chr4 26246157 26246233 -176082114 - AluS SINE Alu -231 82 5 180 287 356 17 chr4 26246467 26246641 -176081706 - MIR SINE MIR -1 261 29 1679 177 9 58 chr4 26246780 26246930 -176081417 + AluJb SINE Alu 1 128 -184 1455 173 0 4 chr4 26246930 26247179 -176081168 + AluJb SINE Alu 51 298 -14 1679 177 9 58 chr4 26247179 26247356 -176080991 + AluJb SINE Alu 128 312 0 182 121 61 0 chr4 26248779 26248812 -176079535 - L2 LINE L2 -94 3219 3185 212 280 178 8 chr4 26249527 26249645 -176078702 + MIR SINE MIR 120 257 -5 1351 197 85 61 chr4 26249847 26250340 -176078007 - MLT1D LTR MaLR 0 505 1 2332 81 13 3 chr4 26250537 26250844 -176077503 + AluY SINE Alu 1 310 -1 2394 96 0 0 chr4 26251847 26252150 -176076197 + AluSx SINE Alu 1 303 -9 288 354 16 16 chr4 26252652 26252779 -176075568 - MIR SINE MIR -24 238 112 493 283 68 34 chr4 26252877 26253114 -176075233 + LTR16C LTR ERVL 134 378 -113 335 343 10 0 chr4 26253222 26253321 -176075026 - MIR SINE MIR -162 100 1 2174 132 36 36 chr4 26253535 26253898 -176074449 + THE1B LTR MaLR 2 364 0 878 253 71 4 chr4 26253946 26254171 -176074176 - MIR SINE MIR -3 259 20 841 209 84 14 chr4 26254185 26254400 -176073947 - MIR SINE MIR -21 241 12 262 345 195 6 chr4 26254445 26254793 -176073554 - L3 LINE CR1 -203 1374 961 243 345 134 21 chr4 26255026 26255168 -176073179 - L2 LINE L2 -5 3267 3110 1581 282 133 13 chr4 26255173 26255442 -176072905 + L2 LINE L2 2090 2325 -989 1837 200 65 16 chr4 26255442 26255887 -176072460 + MLT1C LTR MaLR 1 467 0 1581 282 133 13 chr4 26255887 26256326 -176072021 + L2 LINE L2 2325 2883 -431 447 287 121 27 chr4 26256355 26256578 -176071769 + L2 LINE L2 3067 3310 -3 203 216 0 59 chr4 26256656 26256707 -176071640 + MIR SINE MIR 123 170 -92 189 196 0 0 chr4 26257407 26257458 -176070889 + CT-rich Low_complexity Low_complexity 1 51 0 405 0 0 0 chr4 26258283 26258328 -176070019 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 233 341 0 0 chr4 26260616 26260707 -176067640 + (TA)n Simple_repeat Simple_repeat 2 92 0 289 337 0 0 chr4 26260713 26260802 -176067545 + MIR SINE MIR 174 262 0 245 288 30 0 chr4 26260818 26260884 -176067463 + L2 LINE L2 3242 3309 -4 * 271 305 3 90 chr4 26260882 26261048 -176067299 - MIR SINE MIR -71 137 4 374 241 7 83 chr4 26262958 26263103 -176065244 - MIR SINE MIR -48 214 81 795 255 43 14 chr4 26263463 26263745 -176064602 - MER113 DNA MER1_type? -122 399 110 284 229 0 48 chr4 26263758 26263841 -176064506 - MER116 DNA Mariner -1 79 1 4117 55 2 2 chr4 26264264 26264789 -176063558 - L1PA8 LINE L1 0 6172 5648 2149 115 0 32 chr4 26265159 26265471 -176062876 + AluSx SINE Alu 1 302 -10 397 283 12 81 chr4 26265656 26265770 -176062577 + MIR3 SINE MIR 46 146 -62 478 244 71 36 chr4 26265770 26265938 -176062409 - MER5B DNA MER1_type 0 178 5 397 283 12 81 chr4 26265938 26265996 -176062351 + MIR3 SINE MIR 146 206 -2 579 235 117 31 chr4 26266162 26266324 -176062023 + MIR SINE MIR 15 190 -72 363 285 42 18 chr4 26266925 26267090 -176061257 + L1ME4a LINE L1 5953 6121 0 1434 98 5 0 chr4 26267870 26268074 -176060273 + L1PA13 LINE L1 5958 6162 -1 1934 207 14 7 chr4 26268074 26268504 -176059843 + L1M4 LINE L1 5324 5756 -422 429 237 123 9 chr4 26269042 26269156 -176059191 - L2 LINE L2 -4 3309 3183 2121 127 0 0 chr4 26271555 26271865 -176056482 + AluSx SINE Alu 1 310 0 529 248 128 78 chr4 26272579 26272724 -176055623 + L1ME4a LINE L1 5689 5825 -296 2056 105 46 8 chr4 26272724 26273075 -176055272 + L1MA4A LINE L1 5940 6303 0 529 248 128 78 chr4 26273075 26273279 -176055068 + L1ME4a LINE L1 5825 6068 -53 2223 97 10 0 chr4 26273279 26273577 -176054770 - AluSq SINE Alu -12 301 1 529 248 128 78 chr4 26273577 26273625 -176054722 + L1ME4a LINE L1 6068 6112 -9 556 336 162 42 chr4 26273714 26274825 -176053522 - L2 LINE L2 -202 3070 1824 28802 110 9 15 chr4 26276233 26280944 -176047403 + L1P3 LINE L1 748 5506 -955 1985 118 7 43 chr4 26280944 26281248 -176047099 + AluSc SINE Alu 1 293 -16 1279 60 0 22 chr4 26281248 26281268 -176047079 + (GAAA)n Simple_repeat Simple_repeat 1 199 0 1279 60 0 22 chr4 26281268 26281452 -176046895 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6930 46 24 0 chr4 26281524 26282472 -176045875 + L1PA7 LINE L1 5176 6144 -10 28 29 0 0 chr4 26282616 26282651 -176045696 + AT_rich Low_complexity Low_complexity 1 35 0 738 279 62 12 chr4 26282858 26283098 -176045249 + MIR SINE MIR 11 262 0 218 300 89 0 chr4 26283224 26283314 -176045033 - MIR SINE MIR -56 206 109 23 33 0 0 chr4 26283864 26283894 -176044453 + AT_rich Low_complexity Low_complexity 1 30 0 305 191 36 91 chr4 26284140 26284250 -176044097 - L1ME4a LINE L1 -209 5912 5809 315 0 0 0 chr4 26286514 26286549 -176041798 + (CA)n Simple_repeat Simple_repeat 1 35 0 196 313 30 20 chr4 26287071 26287170 -176041177 - L2 LINE L2 -263 3009 2910 332 228 53 0 chr4 26287203 26287317 -176041030 + MER113 DNA MER1_type? 30 149 -372 859 164 0 0 chr4 26287338 26287466 -176040881 + FLAM_C SINE Alu 2 129 -14 474 318 89 4 chr4 26287575 26287811 -176040536 + MER113 DNA MER1_type? 262 517 -4 1025 153 11 23 chr4 26288204 26288380 -176039967 - MER104 DNA MER2_type -4 176 3 375 291 87 8 chr4 26288521 26288648 -176039699 + MIR SINE MIR 1 137 -125 392 289 35 35 chr4 26289194 26289384 -176038963 - MIR SINE MIR -69 139 2 304 302 7 50 chr4 26290538 26290677 -176037670 + L1ME LINE L1 5299 5431 -731 1271 224 58 52 chr4 26290872 26291202 -176037145 + MLT1J LTR MaLR 22 353 -158 339 266 13 76 chr4 26291419 26291577 -176036770 + MLT1F LTR MaLR 40 187 -355 1434 269 87 78 chr4 26291898 26292836 -176035511 - L1MEd LINE L1 -5169 950 4 23 0 0 0 chr4 26293142 26293165 -176035182 + AT_rich Low_complexity Low_complexity 1 23 0 2199 110 14 3 chr4 26293292 26293584 -176034763 - AluSx SINE Alu -15 297 3 3052 107 18 31 chr4 26293648 26294098 -176034249 + MLT2A1 LTR ERVL 1 444 0 201 228 88 0 chr4 26294207 26294264 -176034083 + MIR SINE MIR 176 237 -25 238 208 0 0 chr4 26294272 26294320 -176034027 + (ATG)n Simple_repeat Simple_repeat 2 49 0 2672 49 0 0 chr4 26294511 26294818 -176033529 - AluY SINE Alu -4 307 1 358 282 81 20 chr4 26295038 26295187 -176033160 - MIR SINE MIR -1 261 104 545 242 79 24 chr4 26295217 26295382 -176032965 + MIR SINE MIR 89 262 0 466 209 181 0 chr4 26295374 26295479 -176032868 - MIR SINE MIR -107 155 32 * 476 291 74 30 chr4 26295885 26296115 -176032232 - MIR SINE MIR 0 262 23 235 255 0 0 chr4 26296312 26296359 -176031988 - L2 LINE L2 -18 3254 3208 * 468 317 0 0 chr4 26296355 26296478 -176031869 + L2 LINE L2 3150 3272 0 451 329 66 0 chr4 26296491 26296677 -176031670 - MIR SINE MIR -64 198 3 185 330 230 0 chr4 26296972 26297072 -176031275 - L3 LINE CR1 -2 1575 1453 2221 99 0 3 chr4 26297482 26297804 -176030543 + AluSg SINE Alu 1 321 0 336 167 19 0 chr4 26298217 26298271 -176030076 - Charlie8 DNA MER1_type -2238 179 125 350 338 39 45 chr4 26298408 26298588 -176029759 + MIR SINE MIR 25 196 -65 207 157 39 0 chr4 26298625 26298676 -176029671 + A-rich Low_complexity Low_complexity 2 54 0 400 216 0 16 chr4 26299359 26299484 -176028863 + CT-rich Low_complexity Low_complexity 2 124 0 652 252 0 0 chr4 26301220 26301359 -176026988 + MIR SINE MIR 112 250 -12 642 245 80 51 chr4 26301480 26301928 -176026419 + L1MC5 LINE L1 7259 7638 -323 793 281 160 41 chr4 26301931 26302419 -176025928 + MLT1F1 LTR MaLR 14 559 -8 464 254 78 19 chr4 26302430 26302635 -176025712 + L1MC5 LINE L1 7709 7925 -36 286 304 78 9 chr4 26302819 26302934 -176025413 + MIR SINE MIR 17 139 -123 192 257 0 0 chr4 26303784 26303854 -176024493 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 27 0 0 0 chr4 26303974 26304001 -176024346 + AT_rich Low_complexity Low_complexity 1 27 0 2260 145 33 34 chr4 26304004 26304523 -176023824 + MLT2A2 LTR ERVL 1 517 -37 335 117 67 192 chr4 26304533 26304653 -176023694 + MER103 DNA DNA 15 119 -47 5810 123 13 2 chr4 26304846 26305687 -176022660 - L1MC1 LINE L1 0 6333 5484 1523 212 17 38 chr4 26305792 26305973 -176022374 + MER58B DNA MER1_type 1 173 -2247 2144 107 7 7 chr4 26305973 26306281 -176022066 - AluSq SINE Alu -5 308 1 1523 212 17 38 chr4 26306281 26306444 -176021903 + MER58B DNA MER1_type 173 338 -3 509 291 128 26 chr4 26307339 26307566 -176020781 - MIR SINE MIR -12 250 1 363 210 340 0 chr4 26307938 26308038 -176020309 - MER94 DNA DNA 0 134 1 549 246 34 17 chr4 26308041 26308216 -176020131 - MER5B DNA MER1_type 0 178 1 534 178 149 136 chr4 26308298 26308408 -176019939 + MLT1J LTR MaLR 214 321 -190 2230 129 7 0 chr4 26308408 26308717 -176019630 + AluSx SINE Alu 1 311 -1 534 178 149 136 chr4 26308717 26308848 -176019499 + MLT1J LTR MaLR 321 458 -53 226 381 79 62 chr4 26309313 26309767 -176018580 - L2 LINE L2 -2 3270 2809 2284 98 3 0 chr4 26310249 26310544 -176017803 + AluSx SINE Alu 1 296 -16 252 250 0 26 chr4 26310604 26310680 -176017667 + GA-rich Low_complexity Low_complexity 3 76 0 537 317 40 18 chr4 26311028 26311266 -176017081 + L1ME4a LINE L1 5653 5898 -223 37 69 0 0 chr4 26311498 26311570 -176016777 + AT_rich Low_complexity Low_complexity 1 72 0 195 278 96 35 chr4 26311651 26311766 -176016581 + MIR SINE MIR 88 209 -53 315 303 10 40 chr4 26311901 26312000 -176016347 - L2 LINE L2 -12 3260 3165 187 312 153 19 chr4 26312082 26312239 -176016108 + MIR SINE MIR 83 260 -2 270 0 0 0 chr4 26312853 26312883 -176015464 + (TG)n Simple_repeat Simple_repeat 2 31 0 1989 200 19 6 chr4 26314274 26314634 -176013713 - MLT1A1 LTR MaLR 0 365 1 715 150 20 34 chr4 26314655 26314802 -176013545 + MER53 DNA DNA 15 159 -30 2432 50 7 3 chr4 26314814 26315111 -176013236 - AluY SINE Alu -13 298 1 576 245 39 52 chr4 26315321 26315554 -176012793 - MER113 DNA MER1_type? -288 233 4 1303 175 8 51 chr4 26315565 26315799 -176012548 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chr4 26316466 26316487 -176011860 + AT_rich Low_complexity Low_complexity 1 21 0 2650 45 0 0 chr4 26317764 26318075 -176010272 - AluY SINE Alu 0 311 1 22 0 0 0 chr4 26318879 26318901 -176009446 + AT_rich Low_complexity Low_complexity 1 22 0 224 284 74 53 chr4 26320474 26320569 -176007778 - MIR SINE MIR -70 192 96 1530 172 4 0 chr4 26320772 26321028 -176007319 - AluJb SINE Alu -3 309 53 691 160 141 113 chr4 26321161 26321329 -176007018 + MER20 DNA MER1_type 1 178 -41 1725 151 10 51 chr4 26321329 26321641 -176006706 + AluJo SINE Alu 1 299 -13 691 160 141 113 chr4 26321641 26321685 -176006662 + MER20 DNA MER1_type 178 219 0 230 211 14 42 chr4 26321837 26321908 -176006439 + CT-rich Low_complexity Low_complexity 2 70 0 232 331 65 24 chr4 26321955 26322124 -176006223 - MIR SINE MIR -66 196 21 232 297 144 82 chr4 26322807 26323152 -176005195 - L2 LINE L2 -17 3255 2886 2262 104 10 0 chr4 26323152 26323451 -176004896 - AluSx SINE Alu -10 302 1 675 254 77 9 chr4 26323610 26323752 -176004595 + MER112 DNA MER1_type 8 172 -88 2256 56 3 14 chr4 26323752 26324039 -176004308 - AluY SINE Alu -5 306 23 675 254 77 9 chr4 26324039 26324116 -176004231 + MER112 DNA MER1_type 172 242 -18 2191 107 0 22 chr4 26324336 26324655 -176003692 + AluSx SINE Alu 1 312 0 411 370 40 32 chr4 26324750 26325153 -176003194 - L2 LINE L2 -862 2452 2047 346 208 13 26 chr4 26325244 26325321 -176003026 + L2 LINE L2 3238 3313 0 255 302 228 31 chr4 26325339 26325790 -176002557 - L2 LINE L2 -1294 2020 1481 535 261 149 64 chr4 26328825 26329200 -175999147 + L2 LINE L2 2866 3272 0 418 309 11 25 chr4 26329198 26329383 -175998964 - MIR SINE MIR -65 143 17 * 993 200 68 9 chr4 26329642 26329862 -175998485 + MER96B DNA MER1_type? 5 237 -180 248 320 172 36 chr4 26330821 26331095 -175997252 - L2 LINE L2 -246 3067 2832 396 0 0 0 chr4 26331095 26331139 -175997208 + (TTG)n Simple_repeat Simple_repeat 2 45 0 248 320 172 36 chr4 26331139 26331160 -175997187 - L2 LINE L2 -481 2832 2815 1452 104 92 126 chr4 26331160 26331477 -175996870 - AluSg1 SINE Alu -3 306 1 248 320 172 36 chr4 26331477 26331792 -175996555 - L2 LINE L2 -498 2815 2371 280 138 181 11 chr4 26332452 26332546 -175995801 - Charlie7 DNA MER1_type -69 2543 2434 231 158 0 0 chr4 26333780 26333818 -175994529 + L2 LINE L2 3268 3305 -8 2067 145 7 0 chr4 26334020 26334330 -175994017 + AluSx SINE Alu 1 312 0 436 194 84 105 chr4 26334341 26334532 -175993815 + Charlie8 DNA MER1_type 90 276 -2141 438 151 66 13 chr4 26335151 26335303 -175993044 + GA-rich Low_complexity Low_complexity 3 162 0 26 0 0 0 chr4 26336755 26336781 -175991566 + AT_rich Low_complexity Low_complexity 1 26 0 2170 115 0 16 chr4 26337042 26337354 -175990993 - AluSg SINE Alu -3 307 1 1806 134 29 11 chr4 26337526 26337833 -175990514 - AluSx SINE Alu 0 312 1 34 0 0 0 chr4 26337936 26337970 -175990377 + AT_rich Low_complexity Low_complexity 1 34 0 1839 151 26 3 chr4 26338278 26338583 -175989764 + AluJb SINE Alu 1 312 0 2120 131 7 0 chr4 26339286 26339592 -175988755 + AluSx SINE Alu 1 308 -4 1467 117 15 38 chr4 26339705 26339969 -175988378 - L1M3 LINE L1 -814 5520 5263 2274 95 7 10 chr4 26340092 26340398 -175987949 - AluSx SINE Alu -5 307 3 226 189 94 0 chr4 26391879 26391932 -175936415 - MER112 DNA MER1_type -185 75 18 2110 121 0 32 chr4 26391943 26392258 -175936089 + AluSx SINE Alu 1 305 -7 1732 104 0 21 chr4 26392666 26392907 -175935440 + AluSg/x SINE Alu 68 303 -7 2294 84 3 10 chr4 26395052 26395348 -175932999 + AluSp SINE Alu 1 294 -19 1154 130 97 0 chr4 26395453 26395638 -175932709 - AluJb SINE Alu -109 203 1 901 275 89 48 chr4 26395940 26396327 -175932020 + L2 LINE L2 2182 2589 -725 2152 189 29 0 chr4 26396327 26396676 -175931671 - MLT1A1 LTR MaLR -4 361 3 901 275 89 48 chr4 26396676 26396702 -175931645 + L2 LINE L2 2589 2612 -702 654 148 0 0 chr4 26396804 26396905 -175931442 + AluSp/q SINE Alu 210 310 -3 338 291 59 35 chr4 26396972 26397175 -175931172 + L1MC4a LINE L1 5191 5398 -748 241 338 20 27 chr4 26397198 26397346 -175931001 + L1MC4a LINE L1 5449 5595 -2213 400 237 51 74 chr4 26397395 26397480 -175930867 + L1MC4a LINE L1 5701 5786 -2022 1797 222 37 6 chr4 26397480 26397832 -175930515 + MLT1A1 LTR MaLR 3 365 0 400 237 51 74 chr4 26397832 26397961 -175930386 + L1MC4a LINE L1 5786 5910 -1898 2210 126 0 0 chr4 26398136 26398438 -175929909 - AluSx SINE Alu -6 306 5 406 263 0 0 chr4 26398584 26398679 -175929668 - MER96B DNA MER1_type? 0 417 323 800 159 36 7 chr4 26398684 26398822 -175929525 - L1MC1 LINE L1 0 6333 6192 1565 142 19 15 chr4 26398825 26399085 -175929262 + MER1B DNA MER1_type 1 261 -78 315 115 39 0 chr4 26399106 26399158 -175929189 - L1MC1 LINE L1 -137 6196 6143 2521 59 10 3 chr4 26400367 26400673 -175927674 + AluY SINE Alu 1 308 -3 527 249 79 32 chr4 26400678 26400867 -175927480 - L1ME LINE L1 -309 5812 5615 1948 134 7 29 chr4 26400878 26401184 -175927163 + AluSx SINE Alu 2 300 -12 2167 82 0 0 chr4 26401327 26401597 -175926750 - AluSc SINE Alu -39 270 1 629 122 31 0 chr4 26401600 26401698 -175926649 - L1MC1 LINE L1 -191 6142 6042 493 313 79 28 chr4 26401700 26401914 -175926433 - HsTC2 DNA Tc2 -1197 701 477 295 253 13 0 chr4 26401897 26401972 -175926375 - HsTC2 DNA Tc2 -1598 300 225 * 223 392 54 0 chr4 26402191 26402321 -175926026 + L2 LINE L2 3136 3272 0 844 217 49 10 chr4 26402879 26403082 -175925265 - MLT1H1 LTR MaLR -7 548 338 341 143 0 63 chr4 26403187 26403250 -175925097 - MER103 DNA DNA -77 89 31 1278 237 176 15 chr4 26403988 26404464 -175923883 + MLT1H1 LTR MaLR 3 555 0 182 292 42 14 chr4 26404468 26404540 -175923807 - MIR SINE MIR -14 248 175 840 161 63 0 chr4 26404747 26404890 -175923457 - FRAM SINE Alu -10 156 5 2226 107 20 0 chr4 26404928 26405227 -175923120 + AluSg SINE Alu 1 305 -5 194 353 39 20 chr4 26405537 26405639 -175922708 + L2 LINE L2 3169 3272 0 311 275 48 85 chr4 26405739 26406175 -175922172 + L1M4 LINE L1 4487 4906 -1240 25 0 0 0 chr4 26406409 26406434 -175921913 + AT_rich Low_complexity Low_complexity 1 25 0 964 195 6 23 chr4 26407172 26407346 -175921001 + FAM SINE Alu 4 174 -1 2347 88 0 3 chr4 26407490 26407795 -175920552 - AluSg SINE Alu -6 304 1 385 258 105 21 chr4 26407804 26407994 -175920353 - L1MC5 LINE L1 -77 7884 7679 2394 190 169 43 chr4 26409248 26409653 -175918694 + L1MCa LINE L1 1172 1525 -4901 743 169 0 70 chr4 26409653 26409795 -175918552 + FLAM_C SINE Alu 2 133 0 2394 190 169 43 chr4 26409795 26410317 -175918030 + L1MCa LINE L1 1525 2216 -4210 5604 171 74 20 chr4 26410328 26410642 -175917705 + L1M4c LINE L1 29 325 -6059 1882 123 49 3 chr4 26410642 26410927 -175917420 - AluSx SINE Alu -14 298 1 5604 171 74 20 chr4 26410927 26411761 -175916586 + L1M4c LINE L1 325 1239 -5145 389 322 55 30 chr4 26411761 26411963 -175916384 + PABL_B LTR ERV1 1 207 -460 609 191 15 44 chr4 26412009 26412145 -175916202 + FLAM_C SINE Alu 2 133 0 4092 149 63 114 chr4 26412162 26413432 -175914915 - pTR5 LTR ERV1 0 2606 1524 535 94 0 0 chr4 26413432 26413496 -175914851 + AluSg/x SINE Alu 145 208 -102 27 0 0 0 chr4 26414593 26414620 -175913727 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 28 chr4 26415254 26415273 -175913074 + AT_rich Low_complexity Low_complexity 1 20 -15 2349 97 7 0 chr4 26415273 26415582 -175912765 + AluSp SINE Alu 1 311 -2 25 0 0 28 chr4 26415582 26415598 -175912749 + AT_rich Low_complexity Low_complexity 20 35 0 2080 104 0 57 chr4 26415724 26416041 -175912306 + AluSx SINE Alu 1 299 -13 2083 75 0 0 chr4 26416169 26416422 -175911925 + AluY SINE Alu 1 253 -58 911 189 24 24 chr4 26416543 26416712 -175911635 + FRAM SINE Alu 1 161 -15 403 245 93 26 chr4 26416750 26416901 -175911446 + MIR SINE MIR 21 181 -81 1507 238 96 22 chr4 26418358 26418668 -175909679 - MER119 DNA MER1_type -2 581 226 2440 69 3 10 chr4 26418668 26418971 -175909376 - AluY SINE Alu -10 301 1 1507 238 96 22 chr4 26418971 26419110 -175909237 - MER119 DNA MER1_type -357 226 99 2141 145 0 0 chr4 26419827 26420138 -175908209 - AluSq SINE Alu -2 311 1 477 203 59 8 chr4 26420829 26420947 -175907400 - L2 LINE L2 0 3313 3190 1927 137 3 58 chr4 26421009 26421337 -175907010 + AluSx SINE Alu 1 310 -2 588 229 86 0 chr4 26421632 26421772 -175906575 + MER96 DNA MER1_type? 24 175 0 343 143 17 12 chr4 26421902 26421972 -175906375 + AluJ/FLAM SINE Alu 1 60 -242 2298 96 3 0 chr4 26423548 26423849 -175904498 - AluSx SINE Alu -10 302 1 2158 130 0 0 chr4 26424377 26424684 -175903663 + AluSg SINE Alu 1 307 -3 404 145 0 13 chr4 26424684 26424760 -175903587 + (GGAA)n Simple_repeat Simple_repeat 1 75 0 417 293 209 5 chr4 26425124 26425339 -175903008 - MIR SINE MIR -2 260 2 191 270 95 32 chr4 26425489 26425552 -175902795 - MIR SINE MIR -187 75 9 815 275 83 45 chr4 26425571 26425872 -175902475 - L2 LINE L2 0 3313 2994 2163 100 4 0 chr4 26425872 26426151 -175902196 + AluSp SINE Alu 24 303 -10 815 275 83 45 chr4 26426151 26426224 -175902123 - L2 LINE L2 -319 2994 2925 545 238 169 43 chr4 26426625 26426856 -175901491 + LTR16A LTR ERVL 57 316 -134 * 1071 253 130 93 chr4 26426853 26427414 -175900933 - MER21B LTR ERV1 -149 714 133 466 305 26 13 chr4 26427677 26427828 -175900519 + LTR16A LTR ERVL 292 444 -6 523 171 191 26 chr4 26427835 26427987 -175900360 + HERV16 LTR ERVL 2 178 -4818 2091 115 24 0 chr4 26428129 26428417 -175899930 - AluSx SINE Alu -17 295 1 358 300 7 47 chr4 26429786 26429936 -175898411 + MIR SINE MIR 36 179 -83 486 268 70 6 chr4 26430100 26430260 -175898087 + MIR SINE MIR 19 189 -62 2328 82 7 0 chr4 26431539 26431833 -175896514 - AluSg SINE Alu -14 296 1 457 248 57 28 chr4 26431851 26431992 -175896355 + MIR SINE MIR 7 151 -111 272 211 14 14 chr4 26432201 26432272 -175896075 + (CACG)n Simple_repeat Simple_repeat 3 73 0 331 286 171 88 chr4 26432492 26433047 -175895300 - L1M2 LINE L1 -5532 1317 717 180 111 0 0 chr4 26435945 26435972 -175892375 + (GGAGAA)n Simple_repeat Simple_repeat 2 28 0 254 185 93 0 chr4 26436797 26436851 -175891496 - L1MC/D LINE L1 -2020 5788 5730 323 271 101 0 chr4 26436855 26436994 -175891353 - L1MC/D LINE L1 -488 5633 5523 713 271 55 6 chr4 26438367 26438548 -175889799 + HERV16 LTR ERVL 535 724 -4272 2763 88 3 3 chr4 26438862 26439226 -175889121 + THE1B LTR MaLR 1 364 0 2013 297 30 35 chr4 26439259 26439327 -175889020 + HERV16 LTR ERVL 848 915 -4081 2548 79 3 0 chr4 26439327 26439632 -175888715 - AluSp SINE Alu -7 306 1 2013 297 30 35 chr4 26439632 26440920 -175887427 + HERV16 LTR ERVL 915 2269 -2727 3544 236 33 32 chr4 26440949 26441589 -175886758 + L1MCb LINE L1 1 644 -5401 1803 132 9 69 chr4 26441589 26441907 -175886440 + AluJb SINE Alu 1 299 -13 3544 236 33 32 chr4 26441907 26442240 -175886107 + L1MCb LINE L1 644 975 -5070 465 190 35 17 chr4 26442341 26442515 -175885832 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 1620 192 3 7 chr4 26442611 26442897 -175885450 - AluJo SINE Alu -22 290 6 624 120 0 0 chr4 26443064 26443156 -175885191 + AluJb SINE Alu 42 133 -179 22 0 0 0 chr4 26443156 26443178 -175885169 + AT_rich Low_complexity Low_complexity 1 22 0 384 22 0 0 chr4 26443178 26443223 -175885124 + (CA)n Simple_repeat Simple_repeat 2 46 0 233 129 0 0 chr4 26443223 26443254 -175885093 + AluJb SINE Alu 131 161 -142 243 0 0 0 chr4 26443254 26443281 -175885066 + (CA)n Simple_repeat Simple_repeat 2 28 0 1102 158 0 0 chr4 26443281 26443439 -175884908 + AluJb SINE Alu 131 288 -24 245 294 12 0 chr4 26443892 26443977 -175884370 - MIR SINE MIR -31 231 146 1945 118 37 0 chr4 26443982 26444252 -175884095 - AluSx SINE Alu -26 286 7 413 281 29 1 chr4 26444269 26444386 -175883961 - MIR SINE MIR -62 146 37 187 235 49 37 chr4 26444440 26444521 -175883826 + L3 LINE CR1 1325 1406 -171 444 289 108 88 chr4 26444590 26445136 -175883211 + LTR67 LTR ERVL 1 557 0 258 168 0 0 chr4 26445316 26445368 -175882979 - MLT2D LTR ERVL -2 412 374 404 208 31 9 chr4 26445387 26445614 -175882733 + GA-rich Low_complexity Low_complexity 1 232 0 2097 158 22 25 chr4 26445617 26445984 -175882363 - MLT2D LTR ERVL -48 366 1 2073 148 0 0 chr4 26446266 26446571 -175881776 + AluSx SINE Alu 1 305 -7 2869 108 0 29 chr4 26446856 26447311 -175881036 + HERVH LTR ERV1 2554 2995 -4718 890 136 27 0 chr4 26447290 26447437 -175880910 + HERVH LTR ERV1 3140 3290 -4423 * 3378 122 8 2 chr4 26447427 26447926 -175880421 + HERVH LTR ERV1 3492 3993 -3720 4187 149 6 8 chr4 26447928 26448591 -175879756 + HERVH LTR ERV1 4488 5149 -2564 1405 127 19 0 chr4 26448592 26448805 -175879542 + HERVH LTR ERV1 5600 5816 -1897 2596 72 48 3 chr4 26448806 26449181 -175879166 + HERVH LTR ERV1 7322 7713 0 3456 67 0 7 chr4 26449181 26449632 -175878715 + LTR7 LTR ERV1 1 448 -2 1640 92 0 0 chr4 26449634 26449841 -175878506 - AluSg SINE Alu -103 207 1 410 243 0 27 chr4 26449846 26449957 -175878390 + MLT1K LTR MaLR 463 570 -18 493 130 26 0 chr4 26449959 26450036 -175878311 - AluJ/FRAM SINE Alu -10 302 224 1198 256 71 88 chr4 26450160 26450695 -175877652 + L2 LINE L2 2311 2853 -460 2211 90 4 0 chr4 26450695 26450974 -175877373 + AluSp SINE Alu 1 280 -33 300 27 0 0 chr4 26450977 26451014 -175877333 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1198 256 71 88 chr4 26451014 26451489 -175876858 + L2 LINE L2 2855 3313 0 1622 134 19 7 chr4 26451720 26451989 -175876358 + L1MA5A LINE L1 6023 6294 -3 1571 149 127 0 chr4 26452662 26452930 -175875417 - AluSx SINE Alu 0 302 1 1816 126 0 0 chr4 26453904 26454151 -175874196 + AluSq SINE Alu 1 247 -66 1267 181 43 47 chr4 26454254 26454553 -175873794 + PABL_B LTR ERV1 370 667 0 981 247 28 48 chr4 26454570 26454861 -175873486 + PABL_B-int LTR ERV1 28 312 -6810 3527 62 18 0 chr4 26454861 26455296 -175873051 + MLT2A1 LTR ERVL 2 444 0 1853 268 64 13 chr4 26455416 26456168 -175872179 + PABL_B-int LTR ERV1 490 1369 -5753 * 7385 232 6 4 chr4 26456166 26457539 -175870808 + PABL_B-int LTR ERV1 2690 4065 -3057 3187 231 40 13 chr4 26457532 26458238 -175870109 + PABL_B-int LTR ERV1 4926 5650 -1472 * 14923 100 25 23 chr4 26458348 26460635 -175867712 - HERVH LTR ERV1 -5421 2292 1 3522 60 0 7 chr4 26460637 26461088 -175867259 - LTR7 LTR ERV1 -2 448 1 806 71 0 0 chr4 26461088 26461187 -175867160 + AluSg/x SINE Alu 203 301 -9 335 256 12 0 chr4 26461192 26461278 -175867069 - MLT1K LTR MaLR -128 460 374 476 305 52 6 chr4 26461374 26461548 -175866799 - MLT1K LTR MaLR -353 235 54 378 237 91 71 chr4 26461550 26461678 -175866669 + MIR SINE MIR 59 194 -68 1865 151 44 41 chr4 26461678 26462042 -175866305 - MLT1A1 LTR MaLR 0 365 1 378 237 91 71 chr4 26462042 26462111 -175866236 + MIR SINE MIR 194 260 -2 793 291 66 40 chr4 26462244 26463200 -175865147 - L1ME LINE L1 -676 5486 4498 * 1415 260 116 61 chr4 26463195 26464254 -175864093 - L1MC5 LINE L1 -286 7675 6554 2440 64 10 0 chr4 26464578 26464875 -175863472 - AluY SINE Alu -11 300 1 255 283 30 24 chr4 26464954 26465120 -175863227 + L1M4 LINE L1 4576 4742 -1404 699 268 47 19 chr4 26465142 26465517 -175862830 + L1MEc LINE L1 177 728 -5835 1392 211 58 30 chr4 26465517 26465881 -175862466 - MLT1A2 LTR MaLR 0 374 1 699 268 47 19 chr4 26465881 26466024 -175862323 + L1MEc LINE L1 728 866 -5697 3195 262 15 15 chr4 26466028 26466769 -175861578 + L1M3c LINE L1 13 753 -5388 1105 217 45 4 chr4 26466771 26466960 -175861387 + L1M3c LINE L1 837 1040 -5101 203 0 0 36 chr4 26466960 26466988 -175861359 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1105 217 45 4 chr4 26466988 26467042 -175861305 + L1M3c LINE L1 1040 1090 -5051 1506 101 19 0 chr4 26467095 26467302 -175861045 + Harlequin LTR ERV1 5883 6093 -803 890 205 103 13 chr4 26467637 26467871 -175860476 - LTR16C LTR ERVL -2 489 235 348 264 79 62 chr4 26468731 26468909 -175859438 - L2 LINE L2 -184 3129 2949 2313 202 66 0 chr4 26468968 26469438 -175858909 - MLT1D LTR MaLR -4 501 1 297 293 29 68 chr4 26469760 26470040 -175858307 + L1MC5 LINE L1 7639 7907 -54 266 199 78 21 chr4 26470124 26470247 -175858100 + L1ME LINE L1 5375 5513 -651 520 208 50 0 chr4 26470668 26470769 -175857578 + MER58A DNA MER1_type 1 106 -1 391 257 25 114 chr4 26471458 26471660 -175856687 - MIR SINE MIR -18 244 61 195 282 169 14 chr4 26471677 26471819 -175856528 - MIR SINE MIR -87 175 12 2225 101 17 0 chr4 26472264 26472562 -175855785 - AluSx SINE Alu -9 303 1 900 263 9 0 chr4 26472667 26472895 -175855452 - L1M1 LINE L1 -4465 3100 2871 1329 231 25 18 chr4 26472939 26473521 -175854826 + L1MEc LINE L1 2025 2614 -3768 * 5654 155 44 47 chr4 26473509 26473859 -175854488 + L1MA9 LINE L1 4266 4616 -1696 1821 142 72 31 chr4 26473859 26474219 -175854128 - THE1C LTR MaLR 0 375 1 5654 155 44 47 chr4 26474219 26474870 -175853477 + L1MA9 LINE L1 4616 5267 -1045 2020 150 32 41 chr4 26474870 26475210 -175853137 + MER1B DNA MER1_type 1 337 0 5654 155 44 47 chr4 26475210 26476254 -175852093 + L1MA9 LINE L1 5267 6311 -1 616 240 41 27 chr4 26476255 26476476 -175851871 + L1MEc LINE L1 811 1034 -5362 2105 137 7 3 chr4 26476571 26476871 -175851476 + AluSx SINE Alu 1 301 -11 490 273 13 32 chr4 26477485 26477639 -175850708 + MER115 DNA AcHobo 1 151 -542 231 278 19 0 chr4 26477708 26477762 -175850585 + Zaphod DNA AcHobo 3977 4031 0 325 293 98 0 chr4 26477928 26477952 -175850395 + L2 LINE L2 1778 1798 -1516 1837 180 26 0 chr4 26477952 26478291 -175850056 + MER7A DNA MER2_type 1 346 0 325 293 98 0 chr4 26478291 26478399 -175849948 + L2 LINE L2 1798 1923 -1391 1523 270 87 26 chr4 26478403 26478895 -175849452 - MLT1E2 LTR MaLR 0 626 105 205 125 125 0 chr4 26479053 26479093 -175849254 - MIR SINE MIR -114 148 104 211 318 116 16 chr4 26479150 26479279 -175849068 + MER5A DNA MER1_type 1 142 -47 23 0 0 0 chr4 26479441 26479464 -175848883 + AT_rich Low_complexity Low_complexity 1 23 0 225 283 83 42 chr4 26479939 26480059 -175848288 + MIR SINE MIR 73 197 -65 842 199 110 22 chr4 26480374 26480719 -175847628 - MLT1I LTR MaLR -3 406 1 305 201 8 149 chr4 26481781 26481881 -175846466 + L1MEd LINE L1 4 82 -6037 2686 25 0 29 chr4 26481881 26482197 -175846150 - AluY SINE Alu -3 308 2 305 201 8 149 chr4 26482197 26482230 -175846117 + L1MEd LINE L1 82 118 -6001 253 239 0 0 chr4 26482332 26482378 -175845969 + L1MEd LINE L1 311 356 -5763 2112 105 11 0 chr4 26482993 26483300 -175845047 + AluSx SINE Alu 1 310 0 232 294 109 8 chr4 26483356 26483475 -175844872 + MIR3 SINE MIR 75 205 -3 1430 168 117 7 chr4 26485251 26485525 -175842822 + 7SLRNA srpRNA srpRNA 2 305 -15 214 156 31 0 chr4 26485525 26485589 -175842758 + (TA)n Simple_repeat Simple_repeat 1 66 0 205 299 175 32 chr4 26486104 26486321 -175842026 - MIR SINE MIR -12 250 3 936 230 106 63 chr4 26486441 26486474 -175841873 - L1MC4a LINE L1 -1972 5836 5806 3837 137 73 21 chr4 26486474 26486556 -175841791 - L1PA15 LINE L1 -7 6158 6082 1845 125 17 21 chr4 26486556 26486843 -175841504 - AluSx SINE Alu -6 306 21 3837 137 73 21 chr4 26486843 26487473 -175840874 - L1PA15 LINE L1 -83 6082 5409 936 230 106 63 chr4 26487473 26487913 -175840434 - L1MC4a LINE L1 -2002 5806 5343 276 268 45 36 chr4 26487936 26488048 -175840299 - HsTC2 DNA Tc2 -1781 117 5 251 242 158 17 chr4 26488052 26488172 -175840175 - L1PA15 LINE L1 -801 5345 5209 215 170 21 0 chr4 26488471 26488518 -175839829 + (TA)n Simple_repeat Simple_repeat 2 49 0 717 236 27 0 chr4 26488819 26488967 -175839380 - MER5A DNA MER1_type -1 188 37 204 40 0 0 chr4 26489311 26489336 -175839011 + (T)n Simple_repeat Simple_repeat 1 25 0 1232 216 46 56 chr4 26489337 26489730 -175838617 - MLT1C LTR MaLR -45 422 34 222 333 111 22 chr4 26489796 26489976 -175838371 + MIR3 SINE MIR 6 201 -7 1476 239 75 41 chr4 26490463 26491024 -175837323 + HsTC2c DNA Tc2 104 683 -46 23 54 0 0 chr4 26493560 26493597 -175834750 + AT_rich Low_complexity Low_complexity 1 37 0 293 87 0 0 chr4 26494479 26494525 -175833822 - Alu SINE Alu -5 296 251 5364 135 99 44 chr4 26494723 26495648 -175832699 + Tigger3b DNA MER2_type 2 1006 -2022 2458 74 3 3 chr4 26495648 26495959 -175832388 - AluSp SINE Alu -1 312 2 5364 135 99 44 chr4 26495959 26496199 -175832148 + Tigger3b DNA MER2_type 1006 1231 0 24 53 0 0 chr4 26498279 26498317 -175830030 + AT_rich Low_complexity Low_complexity 1 38 0 1634 191 14 7 chr4 26499589 26499872 -175828475 - AluJb SINE Alu -27 285 1 1333 195 66 35 chr4 26503093 26503515 -175824832 - Tigger7 DNA MER2_type -1980 507 2 28 61 0 0 chr4 26505385 26505434 -175822913 + AT_rich Low_complexity Low_complexity 1 49 0 437 272 129 37 chr4 26507680 26507974 -175820373 + L1ME4a LINE L1 5534 5854 -267 362 301 0 0 chr4 26511942 26512035 -175816312 - MER58 DNA MER1_type -122 93 1 1768 129 10 54 chr4 26512608 26512903 -175815444 + AluJo SINE Alu 1 282 -30 26 0 0 0 chr4 26512926 26512952 -175815395 + AT_rich Low_complexity Low_complexity 1 26 0 201 39 0 0 chr4 26513022 26513048 -175815299 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr4 26514539 26514560 -175813787 + AT_rich Low_complexity Low_complexity 1 21 0 2407 81 0 7 chr4 26515878 26516188 -175812159 - AluY SINE Alu -3 308 1 490 366 148 16 chr4 26516666 26517152 -175811195 - L3 LINE CR1 -98 1479 930 325 226 165 23 chr4 26517643 26517658 -175810689 - L1MA10 LINE L1 -2 6332 6318 640 213 136 6 chr4 26517658 26517827 -175810520 - L1ME1 LINE L1 -5 6161 5971 763 213 124 16 chr4 26517828 26518086 -175810261 - L1ME1 LINE L1 -250 5916 5631 260 53 26 0 chr4 26519259 26519279 -175809068 + (CA)n Simple_repeat Simple_repeat 1 59 0 260 53 26 0 chr4 26519279 26519317 -175809030 + (CA)n Simple_repeat Simple_repeat 1 39 0 257 128 21 0 chr4 26519421 26519468 -175808879 + (CA)n Simple_repeat Simple_repeat 1 48 0 282 56 0 0 chr4 26519534 26519570 -175808777 + (CGG)n Simple_repeat Simple_repeat 2 37 0 21 57 0 0 chr4 26520209 26520244 -175808103 + GC_rich Low_complexity Low_complexity 1 35 0 291 177 0 0 chr4 26520852 26520914 -175807433 + (TG)n Simple_repeat Simple_repeat 1 62 0 329 264 42 139 chr4 26521007 26521223 -175807124 + L1M2 LINE L1 818 1012 -5837 435 63 0 0 chr4 26521894 26521957 -175806390 + (TG)n Simple_repeat Simple_repeat 2 64 0 677 196 53 151 chr4 26523921 26524207 -175804140 + PABL_B-int LTR ERV1 4787 5015 0 233 337 30 56 chr4 26524370 26524640 -175803707 - PABL_B LTR ERV1 -401 266 4 657 138 0 0 chr4 26524644 26524753 -175803594 + L1MB3 LINE L1 1233 1341 -5043 * 1791 166 18 21 chr4 26524750 26525225 -175803122 + L1MB3 LINE L1 5373 5851 -568 803 223 87 27 chr4 26525228 26525577 -175802770 - MSTD LTR MaLR 0 396 2 3081 138 16 30 chr4 26525577 26525808 -175802539 + L1MB3 LINE L1 5849 6082 -337 1523 128 0 17 chr4 26525808 26526042 -175802305 + MER30 DNA MER1_type 1 230 0 3081 138 16 30 chr4 26526042 26526381 -175801966 + L1MB3 LINE L1 6082 6411 -8 1948 298 38 47 chr4 26526405 26527165 -175801182 + HERV16 LTR ERVL 2300 3110 -2263 2523 68 0 0 chr4 26527165 26527475 -175800872 - AluY SINE Alu 0 311 2 1948 298 38 47 chr4 26527475 26527830 -175800517 + HERV16 LTR ERVL 3110 3467 -1906 546 302 40 20 chr4 26527970 26528172 -175800175 - MER63A DNA MER1_type -4 206 1 341 267 78 71 chr4 26528343 26528639 -175799708 + HERV16 LTR ERVL 3746 4043 -1721 402 363 0 0 chr4 26528913 26529073 -175799274 + HERV16 LTR ERVL 4671 4830 -824 2066 155 0 0 chr4 26529123 26529432 -175798915 - AluSc SINE Alu 0 309 1 312 252 21 49 chr4 26529537 26529680 -175798667 + HERV16 LTR ERVL 4534 4672 -324 1897 111 36 18 chr4 26530012 26530397 -175797950 + AluSp SINE Alu 1 390 0 1345 284 43 19 chr4 26530442 26530721 -175797626 + LTR16A LTR ERVL 19 313 -137 1915 107 21 7 chr4 26530721 26531001 -175797346 + AluSp SINE Alu 1 284 -29 1345 284 43 19 chr4 26531001 26531143 -175797204 + LTR16A LTR ERVL 313 450 0 2223 124 7 0 chr4 26531228 26531535 -175796812 + AluSx SINE Alu 1 309 -3 675 274 30 25 chr4 26531548 26531745 -175796602 - L2 LINE L2 -2 3311 3114 882 263 72 36 chr4 26531918 26532363 -175795984 - LTR16C LTR ERVL -30 461 1 235 220 34 0 chr4 26532368 26532427 -175795920 - MIR SINE MIR -65 197 137 811 252 49 56 chr4 26532460 26532928 -175795419 + MLT1K LTR MaLR 5 544 -44 345 289 18 35 chr4 26532938 26533052 -175795295 - MIR SINE MIR -150 112 1 2128 124 6 40 chr4 26533349 26533788 -175794559 + AluSx SINE Alu 1 428 0 717 53 0 0 chr4 26533788 26533882 -175794465 + (GGGAA)n Simple_repeat Simple_repeat 1 94 0 666 214 139 75 chr4 26533958 26534239 -175794108 - MLT1K LTR MaLR 0 588 290 249 33 0 0 chr4 26534274 26534304 -175794043 + (TCCC)n Simple_repeat Simple_repeat 3 32 0 559 284 44 78 chr4 26534304 26534600 -175793747 - MLT1K LTR MaLR -302 286 1 23 0 0 0 chr4 26534719 26534742 -175793605 + AT_rich Low_complexity Low_complexity 1 23 0 357 262 156 0 chr4 26534767 26534889 -175793458 - LTR67 LTR ERVL -12 545 405 199 297 102 34 chr4 26535332 26535450 -175792897 + L3 LINE CR1 1055 1180 -397 343 336 132 14 chr4 26535510 26535730 -175792617 + L2 LINE L2 2550 2795 -519 213 267 38 120 chr4 26535815 26536138 -175792209 + L2 LINE L2 2796 3109 -163 417 153 0 0 chr4 26536635 26536707 -175791640 + (TG)n Simple_repeat Simple_repeat 1 72 0 322 299 14 48 chr4 26537468 26537615 -175790732 - MER5A DNA MER1_type -39 150 9 301 288 96 8 chr4 26537635 26537760 -175790587 + MIR SINE MIR 27 162 -100 25 0 0 0 chr4 26537940 26537965 -175790382 + AT_rich Low_complexity Low_complexity 1 25 0 208 250 16 31 chr4 26538016 26538080 -175790267 + GA-rich Low_complexity Low_complexity 2 64 0 1880 148 0 40 chr4 26538094 26538398 -175789949 + AluSx SINE Alu 1 292 -20 1462 137 0 55 chr4 26538145 26538399 -175789948 + AluSx SINE Alu 52 292 -20 2366 84 7 0 chr4 26538399 26538707 -175789640 + AluY SINE Alu 2 311 0 1462 137 0 55 chr4 26538707 26538723 -175789624 + AluSx SINE Alu 292 307 -5 716 262 89 0 chr4 26538880 26539100 -175789247 - MIR SINE MIR 0 262 24 244 304 35 17 chr4 26539132 26539247 -175789100 - L1ME LINE L1 -207 5914 5798 294 103 0 0 chr4 26539253 26539292 -175789055 - MIR SINE MIR -107 155 117 257 330 96 50 chr4 26539429 26539690 -175788657 - L2 LINE L2 -73 3240 2968 269 273 186 11 chr4 26539792 26539975 -175788372 + MIR SINE MIR 1 215 -47 1988 127 0 19 chr4 26540068 26540375 -175787972 + AluSx SINE Alu 3 303 -9 247 213 0 0 chr4 26540783 26540830 -175787517 - MIR SINE MIR -111 151 105 217 241 46 46 chr4 26540908 26540995 -175787352 + L2 LINE L2 2950 3036 -236 566 354 13 9 chr4 26541100 26541329 -175787018 + MIR SINE MIR 4 233 -29 286 232 207 12 chr4 26541485 26541567 -175786780 - MIR SINE MIR -109 153 56 23 0 0 0 chr4 26542170 26542193 -175786154 + AT_rich Low_complexity Low_complexity 1 23 0 242 279 16 0 chr4 26542641 26542702 -175785645 + L2 LINE L2 3205 3266 -6 589 305 62 26 chr4 26542746 26542972 -175785375 + MIR SINE MIR 15 248 -14 288 0 0 0 chr4 26593820 26593852 -175734495 + (CA)n Simple_repeat Simple_repeat 2 33 0 484 282 31 18 chr4 26594035 26594198 -175734149 + MIR3 SINE MIR 44 208 0 673 247 58 50 chr4 26594847 26595106 -175733241 - MLT1L LTR MaLR -348 267 7 212 269 19 0 chr4 26595142 26595194 -175733153 + GA-rich Low_complexity Low_complexity 4 56 0 498 336 77 6 chr4 26595194 26595430 -175732917 + MIR SINE MIR 4 254 -8 232 287 99 20 chr4 26595857 26595958 -175732389 - L2 LINE L2 -8 3305 3197 188 222 0 0 chr4 26596088 26596124 -175732223 + L3 LINE CR1 1519 1554 -23 405 0 0 0 chr4 26596309 26596354 -175731993 + (TGAG)n Simple_repeat Simple_repeat 2 46 0 420 256 33 16 chr4 26597812 26597933 -175730414 + L2 LINE L2 3184 3306 -7 2178 109 3 28 chr4 26598058 26598378 -175729969 + AluJb SINE Alu 1 312 0 420 289 47 27 chr4 26598402 26598551 -175729796 - L2 LINE L2 0 3313 3162 1144 226 63 47 chr4 26598682 26599062 -175729285 - MLT1J1 LTR MaLR 0 446 61 601 207 0 9 chr4 26599601 26599712 -175728635 - MER20 DNA MER1_type -1 218 109 1104 206 32 36 chr4 26599722 26599975 -175728372 - THE1C LTR MaLR -50 325 74 581 194 16 48 chr4 26599969 26600093 -175728254 - MER20 DNA MER1_type -99 120 1 * 360 64 0 0 chr4 26601405 26601452 -175726895 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 2173 116 10 0 chr4 26601453 26601763 -175726584 - AluSq SINE Alu 0 313 1 584 268 69 27 chr4 26601882 26602143 -175726204 - L1ME4a LINE L1 -69 6052 5781 559 265 38 27 chr4 26602164 26602349 -175725998 - MIR SINE MIR -27 235 49 570 296 20 5 chr4 26602405 26602601 -175725746 - L1ME4a LINE L1 -347 5774 5576 273 256 50 59 chr4 26603561 26603780 -175724567 - L1MC4 LINE L1 0 8042 7826 1021 217 92 40 chr4 26603804 26604131 -175724216 - L1ME2 LINE L1 -14 6150 5807 350 335 31 6 chr4 26604137 26604298 -175724049 + MLT1L LTR MaLR 451 615 0 552 65 0 0 chr4 26605289 26605366 -175722981 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 2128 144 3 0 chr4 26605387 26605693 -175722654 - AluSx SINE Alu -5 307 1 472 226 66 0 chr4 26605748 26605854 -175722493 - L2 LINE L2 0 3313 3201 711 264 102 25 chr4 26605861 26606145 -175722202 + MLT1G1 LTR MaLR 7 312 -283 530 188 165 18 chr4 26606191 26606361 -175721986 + MLT1G1 LTR MaLR 394 588 -2 825 318 89 25 chr4 26606502 26606962 -175721385 - L2 LINE L2 -260 3053 2558 632 249 143 9 chr4 26606984 26607201 -175721146 - MIR SINE MIR 0 262 17 250 290 37 86 chr4 26607250 26607306 -175721041 - L2 LINE L2 -805 2509 2452 965 129 34 0 chr4 26607306 26607453 -175720894 + L1MA5A LINE L1 6144 6295 -2 250 290 37 86 chr4 26607453 26607558 -175720789 - L2 LINE L2 -862 2452 2356 632 291 69 14 chr4 26607617 26607843 -175720504 - MIR SINE MIR -7 255 14 220 280 0 0 chr4 26607875 26607925 -175720422 + MIR SINE MIR 213 262 0 342 249 230 0 chr4 26608677 26608842 -175719505 - L1ME4a LINE L1 -38 6083 5881 701 264 132 14 chr4 26609048 26609268 -175719079 + MIR SINE MIR 17 262 0 1829 154 0 11 chr4 26609368 26609653 -175718694 + AluJb SINE Alu 1 282 -30 314 314 95 69 chr4 26610844 26611118 -175717229 - L2 LINE L2 -2 3270 2990 521 248 0 129 chr4 26611753 26611963 -175716384 + LTR67 LTR ERVL 3 185 -372 437 239 12 12 chr4 26611982 26612149 -175716198 + CT-rich Low_complexity Low_complexity 3 169 0 217 233 0 0 chr4 26612164 26612207 -175716140 + CT-rich Low_complexity Low_complexity 1 43 0 356 203 0 0 chr4 26612398 26612467 -175715880 - FLAM_A SINE Alu 0 133 65 549 204 99 28 chr4 26612526 26612668 -175715679 - L1MD2 LINE L1 -10 6743 6592 3508 221 49 25 chr4 26612670 26613844 -175714503 - L1MD2 LINE L1 -214 6539 5343 2221 78 0 0 chr4 26613844 26614114 -175714233 - AluSc SINE Alu -6 303 34 3508 221 49 25 chr4 26614114 26614233 -175714114 - L1MD2 LINE L1 -1410 5343 5228 1251 251 36 8 chr4 26614230 26614616 -175713731 - L1MD2 LINE L1 -2781 3759 3363 * 2038 186 14 0 chr4 26614638 26614998 -175713349 + MLT1B LTR MaLR 26 390 0 467 113 0 0 chr4 26615022 26615084 -175713263 - AluS SINE Alu -242 68 7 1499 123 9 0 chr4 26615084 26615295 -175713052 + AluSg/x SINE Alu 83 295 -15 9392 213 87 43 chr4 26615295 26615936 -175712411 - L1MD2 LINE L1 -3300 3240 2629 2189 114 10 0 chr4 26615936 26616233 -175712114 - AluSc SINE Alu -7 302 3 9392 213 87 43 chr4 26616233 26616985 -175711362 - L1MD2 LINE L1 -3911 2629 1912 593 168 72 48 chr4 26616985 26617110 -175711237 + FLAM_C SINE Alu 1 128 -5 9392 213 87 43 chr4 26617110 26618426 -175709921 - L1MD2 LINE L1 -4628 1912 364 279 0 0 0 chr4 26618426 26618457 -175709890 + (TG)n Simple_repeat Simple_repeat 1 31 0 9392 213 87 43 chr4 26618457 26618818 -175709529 - L1MD2 LINE L1 -6176 364 20 279 215 38 13 chr4 26618827 26618906 -175709441 + LTR67 LTR ERVL 477 557 0 3231 132 40 8 chr4 26618997 26619145 -175709202 - L1MA9 LINE L1 0 7272 7130 180 97 0 0 chr4 26619145 26619176 -175709171 + (TG)n Simple_repeat Simple_repeat 2 32 0 3231 132 40 8 chr4 26619176 26619528 -175708819 - L1MA9 LINE L1 -142 7130 6756 297 123 0 62 chr4 26619570 26619635 -175708712 - L1MA9 LINE L1 -1850 5256 5196 3241 240 70 62 chr4 26619638 26621592 -175706755 - L1MA9 LINE L1 -3360 3746 2146 2089 134 0 13 chr4 26621592 26621905 -175706442 - AluSq SINE Alu -3 310 2 3241 240 70 62 chr4 26621905 26622876 -175705471 - L1MA9 LINE L1 -4960 2146 1184 1526 249 21 21 chr4 26622992 26623366 -175704981 + MLT1A2 LTR MaLR 1 374 0 2846 115 38 35 chr4 26623841 26623884 -175704463 - MSTA LTR MaLR 0 428 387 2285 105 20 0 chr4 26623884 26624188 -175704159 + AluSg SINE Alu 1 310 0 2846 115 38 35 chr4 26624188 26624571 -175703776 - MSTA LTR MaLR -41 387 1 1084 252 5 3 chr4 26626335 26626584 -175701763 + MIR SINE MIR 15 257 -5 1866 128 39 0 chr4 26628135 26628416 -175699931 + AluSx SINE Alu 1 292 -20 270 289 82 23 chr4 26628431 26628576 -175699771 - MIR SINE MIR -62 146 10 230 211 14 42 chr4 26629536 26629607 -175698740 + MLT1L LTR MaLR 327 395 -220 22 70 0 0 chr4 26629727 26629770 -175698577 + AT_rich Low_complexity Low_complexity 1 43 0 2434 102 0 0 chr4 26630073 26630386 -175697961 - AluSq SINE Alu 0 313 1 480 283 81 6 chr4 26631040 26631213 -175697134 + MIR SINE MIR 65 250 -12 360 223 112 99 chr4 26631677 26631910 -175696437 + L2 LINE L2 3074 3309 -4 2065 151 0 3 chr4 26631951 26632256 -175696091 - AluJb SINE Alu -8 304 1 917 255 56 40 chr4 26632439 26632741 -175695606 + MLT1I LTR MaLR 95 401 -8 357 150 0 0 chr4 26632892 26632952 -175695395 - FLAM_A SINE Alu -3 130 71 2197 119 0 0 chr4 26634306 26634609 -175693738 - AluSx SINE Alu -9 303 1 2570 124 2 100 chr4 26634691 26635150 -175693197 + MLT2D LTR ERVL 1 414 0 234 333 56 11 chr4 26635251 26635341 -175693006 - MIR SINE MIR -69 139 46 360 286 163 25 chr4 26636796 26636999 -175691348 + MIR SINE MIR 30 260 -2 1174 205 67 0 chr4 26637183 26637393 -175690954 + MER58A DNA MER1_type 1 224 0 220 253 165 44 chr4 26637985 26638076 -175690271 - L2 LINE L2 -30 3242 3141 525 264 103 94 chr4 26638342 26638758 -175689589 - MER115 DNA AcHobo -245 448 29 2305 101 0 3 chr4 26638929 26639236 -175689111 + AluSg1 SINE Alu 1 306 -3 197 65 32 0 chr4 26639631 26639662 -175688685 + (TG)n Simple_repeat Simple_repeat 1 32 0 2483 236 28 8 chr4 26640523 26641031 -175687316 + LTR53 LTR ERVL 2 519 0 395 286 95 20 chr4 26641034 26641181 -175687166 + MIR SINE MIR 35 192 -70 2293 116 0 0 chr4 26641200 26641502 -175686845 - AluSq SINE Alu -11 302 1 793 268 72 41 chr4 26641502 26641920 -175686427 - L2 LINE L2 -6 3307 2877 2227 128 128 28 chr4 26641936 26642102 -175686245 + MSTA LTR MaLR 1 149 -279 1996 108 0 14 chr4 26642102 26642381 -175685966 + AluY SINE Alu 20 294 -17 2227 128 128 28 chr4 26642381 26642603 -175685744 + MSTA LTR MaLR 149 428 0 6078 158 6 44 chr4 26642605 26643693 -175684654 + MSTA-int LTR MaLR 3 1048 -532 240 83 21 62 chr4 26643694 26643742 -175684605 + MSTA-int LTR MaLR 1535 1580 0 2259 139 131 11 chr4 26643751 26644133 -175684214 + MSTA LTR MaLR 1 428 0 2251 121 3 0 chr4 26644496 26644802 -175683545 - AluSp SINE Alu -6 307 1 417 258 11 108 chr4 26644874 26645060 -175683287 + MIR SINE MIR 44 211 -51 359 215 103 89 chr4 26645333 26645717 -175682630 - L1ME4a LINE L1 -12 6109 5685 864 235 97 5 chr4 26645837 26646033 -175682314 + MER58A DNA MER1_type 1 214 -10 33 73 0 0 chr4 26646131 26646199 -175682148 + AT_rich Low_complexity Low_complexity 1 68 0 1440 183 105 68 chr4 26646521 26646664 -175681683 - Charlie4a DNA MER1_type -1485 476 340 2201 119 60 9 chr4 26646664 26647000 -175681347 + THE1A LTR MaLR 1 353 -2 1440 183 105 68 chr4 26647000 26647314 -175681033 - Charlie4a DNA MER1_type -1621 340 2 503 301 66 48 chr4 26647456 26647730 -175680617 + L1ME LINE L1 5209 5489 -672 1755 180 24 7 chr4 26647730 26648025 -175680322 + AluJb SINE Alu 1 300 -12 503 301 66 48 chr4 26648025 26648256 -175680091 + L1ME LINE L1 5489 5714 -447 3096 194 20 7 chr4 26648509 26649061 -175679286 + MER89 LTR ERV1 1 559 0 2126 107 24 13 chr4 26649253 26649551 -175678796 + AluSq SINE Alu 1 301 -12 407 269 126 47 chr4 26650676 26650977 -175677370 + L2 LINE L2 2988 3312 -1 2015 156 13 50 chr4 26651212 26651452 -175676895 - MLT1A1 LTR MaLR 0 365 143 2554 119 31 19 chr4 26651452 26651812 -175676535 + THE1B LTR MaLR 1 364 0 2015 156 13 50 chr4 26651812 26651950 -175676397 - MLT1A1 LTR MaLR -222 143 1 1017 104 0 0 chr4 26652029 26652163 -175676184 - AluSg/x SINE Alu -21 291 158 2220 111 7 0 chr4 26652584 26652881 -175675466 - AluSq SINE Alu -14 299 1 203 247 140 11 chr4 26652941 26653034 -175675313 - MIR SINE MIR -50 212 108 226 341 62 8 chr4 26653786 26653915 -175674432 + MIR3 SINE MIR 12 147 -61 394 323 79 0 chr4 26654066 26654230 -175674117 + MIR SINE MIR 14 190 -72 334 73 0 0 chr4 26655050 26655091 -175673256 - MLT2C1 LTR ERVL 0 397 357 360 0 0 0 chr4 26655094 26655134 -175673213 + (TG)n Simple_repeat Simple_repeat 2 41 0 3058 101 14 20 chr4 26655135 26655573 -175672774 - MLT2A1 LTR ERVL -8 436 2 201 39 0 0 chr4 26655575 26655601 -175672746 + (TG)n Simple_repeat Simple_repeat 1 26 0 225 0 0 0 chr4 26655601 26655626 -175672721 + (GA)n Simple_repeat Simple_repeat 1 25 0 1619 230 27 66 chr4 26655628 26656111 -175672236 - MLT2B1 LTR ERVL -56 464 1 2327 187 65 16 chr4 26656134 26656577 -175671770 + MLT1C LTR MaLR 3 467 0 673 265 91 16 chr4 26656578 26656831 -175671516 + MLT1L LTR MaLR 340 611 -4 385 319 29 14 chr4 26657304 26657442 -175670905 + L2 LINE L2 2916 3055 -217 244 314 97 24 chr4 26657538 26657662 -175670685 + MIR3 SINE MIR 25 157 -51 288 276 60 26 chr4 26658629 26658745 -175669602 + MER5B DNA MER1_type 1 120 -58 395 339 18 9 chr4 26658745 26658857 -175669490 + L2 LINE L2 3158 3270 -2 324 322 89 7 chr4 26658900 26659046 -175669301 + MIR SINE MIR 96 253 -9 724 248 209 27 chr4 26659118 26659449 -175668898 - MLT1I LTR MaLR 0 409 19 2246 125 0 3 chr4 26659617 26659930 -175668417 - AluSx SINE Alu 0 312 1 1022 266 57 3 chr4 26659967 26660283 -175668064 - L1MB7 LINE L1 -10 6672 6340 861 254 29 25 chr4 26660286 26660530 -175667817 - LTR55 LTR ERV -5 543 299 6713 239 45 30 chr4 26660535 26663787 -175664560 - L1MB7 LINE L1 -1443 5201 524 309 287 84 38 chr4 26663959 26664220 -175664127 - L1MB7 LINE L1 -6257 285 13 425 246 16 16 chr4 26664508 26664634 -175663713 + LTR67 LTR ERVL 432 557 0 739 313 79 63 chr4 26665148 26665653 -175662694 + L3 LINE CR1 859 1371 -206 509 353 60 6 chr4 26666312 26666479 -175661868 - MER91A DNA MER1_type 0 196 21 189 292 112 34 chr4 26666633 26666722 -175661625 + L3 LINE CR1 1370 1465 -112 634 212 192 0 chr4 26666822 26666973 -175661374 - MER5A DNA MER1_type -2 187 8 555 183 242 26 chr4 26666983 26667136 -175661211 - MER5A DNA MER1_type 0 189 4 414 302 48 0 chr4 26667240 26667366 -175660981 - L2 LINE L2 0 3313 3182 497 258 66 13 chr4 26667845 26668034 -175660313 + MIR SINE MIR 4 204 -58 454 326 44 0 chr4 26668400 26668581 -175659766 + L1ME LINE L1 5476 5664 -457 1639 174 0 47 chr4 26668740 26669057 -175659290 + AluJb SINE Alu 1 302 -10 1446 67 114 0 chr4 26669092 26669285 -175659062 - AluY SINE Alu -16 295 81 1049 259 65 45 chr4 26669291 26669781 -175658566 - MLT1G LTR MaLR -76 479 1 281 270 232 27 chr4 26669795 26670058 -175658289 - MLT1H1-int LTR MaLR -30 1705 1028 237 386 74 0 chr4 26670318 26670494 -175657853 - MLT1H1-int LTR MaLR -477 894 706 545 314 18 9 chr4 26670848 26671077 -175657270 - MLT1H1-int LTR MaLR -847 524 294 1506 231 80 76 chr4 26671216 26671767 -175656580 - MLT1H1 LTR MaLR -2 553 1 1941 172 28 46 chr4 26672533 26672928 -175655419 + MLT1B LTR MaLR 1 388 -2 550 207 9 9 chr4 26672933 26673044 -175655303 - L1MC4a LINE L1 -931 6877 6767 372 216 0 0 chr4 26673044 26673118 -175655229 + MLT1D LTR MaLR 1 74 -431 489 279 71 26 chr4 26674121 26674275 -175654072 + MIR SINE MIR 9 169 -93 421 201 15 0 chr4 26676952 26677060 -175651287 + MLT2C2 LTR ERVL 1 72 -342 2168 39 0 16 chr4 26678370 26678628 -175649719 - AluY SINE Alu -13 298 45 1057 214 68 65 chr4 26678664 26679000 -175649347 + MLT2C2 LTR ERVL 59 395 -69 250 149 0 43 chr4 26678959 26679006 -175649341 + MSTD LTR MaLR 288 332 -64 * 220 143 36 18 chr4 26679016 26679072 -175649275 + (CATATA)n Simple_repeat Simple_repeat 1 57 0 226 286 0 22 chr4 26679074 26679165 -175649182 + L1MC4 LINE L1 6614 6702 -1340 * 255 255 0 43 chr4 26679106 26679200 -175649147 - L1MC4 LINE L1 -1339 6703 6614 246 281 73 0 chr4 26679166 26679248 -175649099 + L1MC4 LINE L1 6616 6703 -1339 * 180 176 0 0 chr4 26679249 26679283 -175649064 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 180 152 0 0 chr4 26679304 26679337 -175649010 + (CA)n Simple_repeat Simple_repeat 2 34 0 784 182 7 39 chr4 26679418 26679475 -175648872 - MER5B DNA MER1_type -6 172 115 2165 112 3 0 chr4 26679475 26679795 -175648552 + AluSp SINE Alu 1 321 0 784 182 7 39 chr4 26679795 26679890 -175648457 - MER5B DNA MER1_type -63 115 24 276 236 0 0 chr4 26679891 26679946 -175648401 + Tigger5 DNA MER2_type 1 55 -2268 273 288 0 0 chr4 26679914 26679987 -175648360 + Tigger5 DNA MER2_type 2250 2322 -1 * 244 175 0 0 chr4 26679990 26680030 -175648317 + Tigger5 DNA MER2_type 16 55 -2268 233 245 0 0 chr4 26679999 26680048 -175648299 + Tigger5 DNA MER2_type 2251 2299 -24 * 428 167 26 0 chr4 26680050 26680128 -175648219 + Tigger5 DNA MER2_type 2244 2323 0 886 267 17 31 chr4 26680629 26680826 -175647521 + L1MC4a LINE L1 5655 5848 -1960 590 284 98 16 chr4 26680826 26681020 -175647327 - MER63A DNA MER1_type 0 210 1 886 267 17 31 chr4 26681020 26681114 -175647233 + L1MC4a LINE L1 5848 5942 -1866 2639 185 52 12 chr4 26681135 26681653 -175646694 + L1MB5 LINE L1 5585 6123 -51 1846 154 7 3 chr4 26681653 26681951 -175646396 + AluJb SINE Alu 14 312 0 320 284 103 52 chr4 26682386 26682541 -175645806 + MIR SINE MIR 79 241 -21 436 236 230 6 chr4 26682795 26682969 -175645378 - MIR SINE MIR -13 249 37 438 254 227 22 chr4 26683050 26683235 -175645112 - L3 LINE CR1 -5 1572 1350 676 251 191 53 chr4 26684460 26684878 -175643469 + MLT1H1 LTR MaLR 78 553 -2 1831 209 30 24 chr4 26684933 26685302 -175643045 + MLT1A2 LTR MaLR 2 372 -2 444 261 218 38 chr4 26686377 26686839 -175641508 + MLT1L LTR MaLR 1 604 -11 180 111 0 0 chr4 26687076 26687103 -175641244 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 469 329 84 19 chr4 26688104 26688317 -175640030 + MLT1K LTR MaLR 54 280 -308 425 255 20 10 chr4 26688343 26688445 -175639902 + MLT1K LTR MaLR 486 588 0 249 276 112 37 chr4 26688646 26688780 -175639567 - MIR SINE MIR -17 245 102 595 181 188 0 chr4 26689111 26689249 -175639098 - L1ME1 LINE L1 -5 6161 5998 390 162 0 0 chr4 26689250 26689324 -175639023 + (CA)n Simple_repeat Simple_repeat 2 75 0 234 91 0 0 chr4 26689323 26689356 -175638991 + (TC)n Simple_repeat Simple_repeat 1 33 0 * 225 249 52 88 chr4 26689356 26689549 -175638798 - L1MC2 LINE L1 -316 6028 5843 * 5487 227 63 59 chr4 26689399 26691146 -175637201 - L1ME1 LINE L1 -169 5995 4255 1839 179 0 10 chr4 26691146 26691517 -175636830 - AluJb SINE Alu -2 310 1 5487 227 63 59 chr4 26691517 26691581 -175636766 - L1ME1 LINE L1 -1909 4255 4193 406 0 0 0 chr4 26691581 26691626 -175636721 + (TTTA)n Simple_repeat Simple_repeat 2 88 0 2005 108 29 11 chr4 26691626 26691904 -175636443 - AluSx SINE Alu -1 327 1 5487 227 63 59 chr4 26691904 26693502 -175634845 - L1ME1 LINE L1 -1971 4193 2507 2127 62 12 0 chr4 26693502 26693758 -175634589 - AluY SINE Alu -9 302 44 5487 227 63 59 chr4 26693758 26694081 -175634266 - L1ME1 LINE L1 -3657 2507 2187 2485 138 73 0 chr4 26694208 26694605 -175633742 - MSTB LTR MaLR 0 426 1 249 290 29 0 chr4 26694619 26694688 -175633659 + Charlie8 DNA MER1_type 2347 2417 0 1727 141 9 0 chr4 26695144 26695445 -175632902 - Tigger4(Zombi) DNA MER2_type 0 2731 38 714 309 114 11 chr4 26696510 26696886 -175631461 - MLT1L LTR MaLR 0 615 201 1535 192 34 10 chr4 26697648 26697940 -175630407 - AluJo SINE Alu -13 299 1 409 369 22 9 chr4 26698614 26698836 -175629511 + MIR SINE MIR 3 227 -35 1028 167 0 18 chr4 26698951 26699119 -175629228 - FAM SINE Alu -15 170 6 834 274 151 30 chr4 26699149 26699481 -175628866 - MLT1K LTR MaLR -189 399 28 188 319 151 17 chr4 26700175 26700294 -175628053 + L2 LINE L2 3176 3310 -3 301 323 45 20 chr4 26700517 26700718 -175627629 - MIR SINE MIR -1 261 56 183 156 0 0 chr4 26702021 26702053 -175626294 + CT-rich Low_complexity Low_complexity 2 33 0 1752 138 22 53 chr4 26702053 26702371 -175625976 - AluJb SINE Alu -4 308 1 180 237 34 0 chr4 26702484 26702543 -175625804 + L3 LINE CR1 1371 1431 -146 207 306 0 0 chr4 26702806 26702868 -175625479 - MIR SINE MIR -2 260 199 489 300 89 8 chr4 26702874 26703111 -175625236 + MIR SINE MIR 4 259 -3 379 231 7 61 chr4 26703062 26703209 -175625138 - MIR SINE MIR -21 241 103 * 206 378 14 0 chr4 26703282 26703356 -175624991 - MIR SINE MIR -186 76 2 192 343 111 19 chr4 26703507 26703615 -175624732 - MIR SINE MIR -117 145 28 282 139 13 51 chr4 26703649 26703728 -175624619 + CT-rich Low_complexity Low_complexity 4 79 0 342 214 83 0 chr4 26703733 26703817 -175624530 + MER5B DNA MER1_type 88 178 0 237 326 43 0 chr4 26704081 26704173 -175624174 + L2 LINE L2 2567 2662 -652 343 270 42 98 chr4 26704312 26704527 -175623820 + L2 LINE L2 2954 3156 -116 244 309 74 0 chr4 26704560 26704641 -175623706 - L2 LINE L2 -40 3232 3146 265 309 0 0 chr4 26704911 26704992 -175623355 + L2 LINE L2 3187 3267 -5 204 163 0 0 chr4 26706525 26706568 -175621779 + T-rich Low_complexity Low_complexity 1 43 0 285 253 0 0 chr4 26707830 26707913 -175620434 + A-rich Low_complexity Low_complexity 1 83 0 403 210 198 19 chr4 26707956 26708113 -175620234 + MIR SINE MIR 5 189 -73 286 326 57 7 chr4 26708223 26708364 -175619983 + L3 LINE CR1 1404 1551 -26 2424 86 13 0 chr4 26709828 26710130 -175618217 + AluSg SINE Alu 1 306 -4 212 289 0 26 chr4 26710587 26710663 -175617684 + GA-rich Low_complexity Low_complexity 1 74 0 561 264 163 79 chr4 26711190 26711656 -175616691 + MLT1L LTR MaLR 111 615 0 185 298 73 40 chr4 26715536 26715660 -175612687 + L2 LINE L2 2718 2845 -469 210 309 29 0 chr4 26715759 26715827 -175612520 - MIR SINE MIR -6 256 187 985 199 104 61 chr4 26715932 26716259 -175612088 - L1ME3A LINE L1 -13 6157 5817 473 295 80 8 chr4 26716301 26716538 -175611809 + L1MC/D LINE L1 5318 5571 -2237 274 265 15 0 chr4 26716568 26716636 -175611711 + L1MC/D LINE L1 5694 5762 -2046 1817 175 112 48 chr4 26717098 26717208 -175611139 - MLT1D LTR MaLR 0 505 403 2378 100 0 0 chr4 26717208 26717508 -175610839 + AluSx SINE Alu 1 300 -12 1817 175 112 48 chr4 26717508 26717872 -175610475 - MLT1D LTR MaLR -102 403 1 2379 135 22 0 chr4 26718242 26718598 -175609749 - THE1B LTR MaLR 0 364 1 1774 181 26 47 chr4 26718605 26718987 -175609360 + MLT1A2 LTR MaLR 1 374 0 351 0 0 0 chr4 26719107 26719146 -175609201 + (TA)n Simple_repeat Simple_repeat 1 39 0 573 216 130 0 chr4 26720118 26720279 -175608068 + MER5A DNA MER1_type 5 189 0 226 342 37 11 chr4 26720284 26720474 -175607873 + L2 LINE L2 2700 2894 -420 29 28 0 0 chr4 26721676 26721712 -175606635 + AT_rich Low_complexity Low_complexity 1 36 0 1856 136 7 14 chr4 26721712 26721999 -175606348 - AluJo SINE Alu -17 295 11 259 204 182 34 chr4 26723205 26723293 -175605054 - MLT1H LTR MaLR -44 505 405 547 184 160 0 chr4 26723332 26723457 -175604890 + MLT1H LTR MaLR 405 549 0 193 200 0 0 chr4 26723825 26723865 -175604482 - L2 LINE L2 -852 2462 2423 1735 239 126 10 chr4 26724076 26724562 -175603785 - MLT1F LTR MaLR 0 542 1 309 246 92 80 chr4 26724809 26724943 -175603404 - MIR SINE MIR -67 141 30 2147 119 3 0 chr4 26724943 26725237 -175603110 - AluSx SINE Alu -16 296 2 309 246 92 80 chr4 26725237 26725267 -175603080 - MIR SINE MIR -178 30 2 252 122 0 0 chr4 26726122 26726163 -175602184 + (GGA)n Simple_repeat Simple_repeat 3 43 0 180 111 0 0 chr4 26728063 26728090 -175600257 + (A)n Simple_repeat Simple_repeat 1 27 0 524 254 66 44 chr4 26728421 26728602 -175599745 - MARNA DNA Mariner -86 500 316 197 407 12 0 chr4 26728684 26728770 -175599577 + L2 LINE L2 3186 3272 0 301 333 88 13 chr4 26728777 26728936 -175599411 - MARNA DNA Mariner -373 213 43 440 266 23 0 chr4 26730103 26730231 -175598116 - MIR SINE MIR -53 209 79 265 301 37 73 chr4 26730294 26730430 -175597917 - MIR SINE MIR -130 132 2 335 243 57 36 chr4 26730730 26730870 -175597477 - L2 LINE L2 -8 3264 3122 435 317 62 3 chr4 26730902 26731097 -175597250 - MIR SINE MIR 0 262 48 2533 58 0 0 chr4 26731109 26731403 -175596944 + AluY SINE Alu 1 294 -17 2040 123 6 25 chr4 26731560 26731877 -175596470 - AluSx SINE Alu -1 311 1 258 331 103 6 chr4 26731877 26732052 -175596295 - L2 LINE L2 -565 2749 2558 247 326 81 38 chr4 26732182 26732526 -175595821 - L2 LINE L2 -1224 2090 1732 30 0 0 0 chr4 26733498 26733528 -175594819 + AT_rich Low_complexity Low_complexity 1 30 0 270 239 76 22 chr4 26733781 26733873 -175594474 + L1MC4a LINE L1 5834 5930 -1878 209 222 0 0 chr4 26733913 26733958 -175594389 + (TA)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr4 26734084 26734106 -175594241 + AT_rich Low_complexity Low_complexity 1 22 0 1937 147 7 10 chr4 26734113 26734419 -175593928 + AluSx SINE Alu 1 305 -7 204 214 0 36 chr4 26734445 26734501 -175593846 + A-rich Low_complexity Low_complexity 2 55 0 761 190 127 13 chr4 26736319 26736477 -175591870 - MER45A DNA AcHobo 0 178 3 246 253 111 40 chr4 26737574 26737673 -175590674 - MIR SINE MIR -89 173 68 303 230 20 10 chr4 26737906 26738006 -175590341 - MER113 DNA MER1_type? -415 106 6 384 319 32 16 chr4 26738313 26738501 -175589846 - L3 LINE CR1 -503 1074 884 2127 128 7 0 chr4 26738959 26739248 -175589099 + AluSx SINE Alu 1 291 -21 343 272 39 106 chr4 26739299 26739611 -175588736 - L1ME LINE L1 -347 5774 5484 996 184 27 5 chr4 26740264 26740449 -175587898 + MER5A DNA MER1_type 1 189 0 350 274 48 0 chr4 26741045 26741129 -175587218 + MER117 DNA MER1_type 109 196 -1 260 140 105 0 chr4 26741158 26741215 -175587132 + L2 LINE L2 3210 3272 0 24 0 0 0 chr4 26744039 26744063 -175584284 + AT_rich Low_complexity Low_complexity 1 24 0 411 292 40 71 chr4 26744247 26744600 -175583747 + L1ME4a LINE L1 5573 5914 -207 261 0 0 0 chr4 26744618 26744647 -175583700 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 306 0 0 0 chr4 26744646 26744680 -175583667 + (CA)n Simple_repeat Simple_repeat 1 34 0 282 56 0 0 chr4 26744680 26744716 -175583631 + (GA)n Simple_repeat Simple_repeat 1 36 0 2614 54 0 0 chr4 26744800 26745096 -175583251 - AluY SINE Alu -15 296 1 182 200 73 0 chr4 26745868 26745923 -175582424 - L2 LINE L2 -335 2978 2920 3473 179 6 25 chr4 26745977 26746609 -175581738 - MER82 DNA MER2_type -4 649 30 230 343 19 19 chr4 26747295 26747403 -175580944 + MIR SINE MIR 33 140 -122 236 213 0 0 chr4 26748664 26748711 -175579636 - MER91 DNA MER1_type 0 140 94 411 308 109 24 chr4 26749394 26749885 -175578462 + L2 LINE L2 2739 3272 -41 2062 125 4 0 chr4 26750108 26750424 -175577923 + AluSx SINE Alu 1 317 0 557 258 54 21 chr4 26750490 26750709 -175577638 - MIR SINE MIR -34 228 11 279 215 156 76 chr4 26750827 26751064 -175577283 + L2 LINE L2 2900 3155 -158 232 240 94 10 chr4 26751064 26751160 -175577187 - HsTC2 DNA Tc2 0 1900 1797 340 118 0 0 chr4 26751169 26751220 -175577127 - HsTC2 DNA Tc2 -1846 52 2 297 192 192 48 chr4 26751221 26751346 -175577001 + L2 LINE L2 3167 3309 -4 478 220 0 10 chr4 26751359 26751459 -175576888 - MIR SINE MIR -91 171 73 290 304 40 27 chr4 26752999 26753147 -175575200 + L2 LINE L2 3104 3253 -60 422 242 86 0 chr4 26753241 26753369 -175574978 - MIR SINE MIR -86 176 38 428 224 10 10 chr4 26753459 26753557 -175574790 - MER63 DNA MER1_type -291 771 674 4302 140 21 28 chr4 26753605 26753907 -175574440 + MER44D DNA MER2_type 32 201 -2286 2242 90 4 0 chr4 26753907 26754224 -175574123 + AluSc SINE Alu 1 318 0 4302 140 21 28 chr4 26754224 26754627 -175573720 + MER44D DNA MER2_type 201 605 0 201 64 0 64 chr4 26755805 26755852 -175572495 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 270 320 86 36 chr4 26756023 26756245 -175572102 - L2 LINE L2 -233 3039 2807 204 213 0 0 chr4 26756820 26756867 -175571480 + (CA)n Simple_repeat Simple_repeat 2 48 0 1035 165 0 24 chr4 26756875 26757045 -175571302 - AluJb SINE Alu -11 301 136 416 19 19 0 chr4 26757896 26757949 -175570398 + (CA)n Simple_repeat Simple_repeat 2 55 0 1019 81 0 0 chr4 26759100 26759224 -175569123 + AluSg/x SINE Alu 176 299 -11 225 286 0 66 chr4 26760120 26760211 -175568136 - MIR3 SINE MIR -32 176 92 654 298 80 30 chr4 26760387 26760750 -175567597 + L2 LINE L2 2879 3259 -54 1955 143 3 34 chr4 26760900 26761222 -175567125 + AluSx SINE Alu 1 312 0 280 263 166 23 chr4 26761526 26761701 -175566646 + MIR SINE MIR 58 257 -5 867 265 90 45 chr4 26761838 26762193 -175566154 - L2 LINE L2 0 3313 2943 1183 200 98 0 chr4 26762849 26763144 -175565203 - MER5C DNA MER1_type 0 324 1 1738 182 65 3 chr4 26764681 26765005 -175563342 + MER47A DNA MER2_type 1 344 -22 6940 165 3 10 chr4 26765006 26766881 -175561466 + L1PB1 LINE L1 3932 5792 -359 189 0 0 0 chr4 26766881 26766902 -175561445 + (CA)n Simple_repeat Simple_repeat 1 21 0 6940 165 3 10 chr4 26766902 26767260 -175561087 + L1PB1 LINE L1 5792 6151 0 510 272 35 40 chr4 26767466 26767694 -175560653 + MER34 LTR ERV1 1 227 -315 323 235 158 65 chr4 26768298 26768545 -175559802 + MER34 LTR ERV1 225 494 -48 2181 129 3 0 chr4 26768628 26768939 -175559408 + AluSx SINE Alu 1 312 0 308 143 238 60 chr4 26769091 26769175 -175559172 + LTR8 LTR ERV1 1 99 -592 2281 165 179 20 chr4 26769179 26769725 -175558622 + LTR10E LTR ERV1 1 633 0 2661 194 46 47 chr4 26769728 26770342 -175558005 + LTR8A LTR ERV1 115 727 0 1467 201 0 0 chr4 26770375 26770614 -175557733 - MER8 DNA MER2_type 0 239 1 232 339 31 23 chr4 26771343 26771473 -175556874 + MIR SINE MIR 58 188 -74 291 28 0 0 chr4 26772426 26772462 -175555885 + (CA)n Simple_repeat Simple_repeat 2 37 0 196 287 205 0 chr4 26772527 26772649 -175555698 + MIR3 SINE MIR 54 200 -8 232 282 51 26 chr4 26772676 26772754 -175555593 + MIR SINE MIR 25 104 -104 204 381 94 5 chr4 26772764 26772987 -175555360 - MIR SINE MIR 0 262 20 181 268 42 0 chr4 26774103 26774174 -175554173 + L2 LINE L2 3115 3188 -125 345 289 29 0 chr4 26774192 26774296 -175554051 + MER94 DNA DNA 6 112 -22 566 293 16 60 chr4 26774421 26774670 -175553677 + MIR SINE MIR 10 247 -15 542 258 22 22 chr4 26775281 26775463 -175552884 - MIR SINE MIR -11 251 70 376 308 76 20 chr4 26775677 26775715 -175552632 + MLT1L LTR MaLR 401 435 -180 690 179 20 77 chr4 26775715 26775911 -175552436 - MER53 DNA DNA 0 189 5 376 308 76 20 chr4 26775911 26776070 -175552277 + MLT1L LTR MaLR 435 609 -6 21 0 0 0 chr4 26776274 26776295 -175552052 + AT_rich Low_complexity Low_complexity 1 21 0 1686 86 9 0 chr4 26776463 26776684 -175551663 + AluY SINE Alu 83 305 -6 198 0 0 0 chr4 26776806 26776828 -175551519 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 189 74 0 0 chr4 26777223 26777250 -175551097 + (TC)n Simple_repeat Simple_repeat 1 27 0 346 261 63 74 chr4 26777532 26777816 -175550531 + L1M4 LINE L1 4565 4845 -1301 294 125 0 0 chr4 26779722 26779770 -175548577 + (GA)n Simple_repeat Simple_repeat 2 49 0 246 95 0 0 chr4 26779858 26779900 -175548447 + (T)n Simple_repeat Simple_repeat 1 42 0 2003 123 3 7 chr4 26779916 26780200 -175548147 + AluSx SINE Alu 1 283 -29 2318 57 0 69 chr4 26780644 26780961 -175547386 + AluY SINE Alu 1 295 -16 27 49 0 0 chr4 26781071 26781112 -175547235 + AT_rich Low_complexity Low_complexity 1 41 0 709 186 16 8 chr4 26781121 26781250 -175547097 - FLAM_C SINE Alu -2 131 2 770 226 57 0 chr4 26781252 26781429 -175546918 + MER3 DNA MER1_type 12 198 -11 1276 230 60 0 chr4 26781500 26781752 -175546595 + Tigger7 DNA MER2_type 1 267 -2220 564 168 0 30 chr4 26781751 26781852 -175546495 + Tigger7 DNA MER2_type 2390 2487 0 * 489 76 0 0 chr4 26781893 26781959 -175546388 + (CA)n Simple_repeat Simple_repeat 1 66 0 34 24 0 0 chr4 26782639 26782680 -175545667 + AT_rich Low_complexity Low_complexity 1 41 0 2012 134 14 7 chr4 26782787 26783101 -175545246 - AluSx SINE Alu 0 316 1 213 39 0 0 chr4 26783834 26783860 -175544487 + (A)n Simple_repeat Simple_repeat 1 26 0 2141 100 7 10 chr4 26784852 26785153 -175543194 + AluSq SINE Alu 2 301 -12 1330 112 0 0 chr4 26785153 26785331 -175543016 + AluSg/x SINE Alu 132 309 -1 466 204 42 42 chr4 26785349 26785491 -175542856 + MER5A DNA MER1_type 43 184 -5 1961 161 45 9 chr4 26785710 26786046 -175542301 + MER7A DNA MER2_type 1 346 0 505 284 59 87 chr4 26786852 26787243 -175541104 + MLT1I LTR MaLR 28 407 -2 389 248 101 20 chr4 26787398 26787547 -175540800 - MIR SINE MIR -54 208 48 265 234 16 16 chr4 26788011 26788075 -175540272 - L2 LINE L2 -2 3270 3207 882 249 114 4 chr4 26788160 26788433 -175539914 + MER46C DNA MER2_type 27 329 -9 412 185 99 0 chr4 26788830 26788911 -175539436 - MER112 DNA MER1_type -78 182 94 220 362 37 3 chr4 26789432 26789557 -175538790 - MIR SINE MIR -59 149 16 1977 177 0 0 chr4 26789781 26790097 -175538250 + MER7A DNA MER2_type 29 342 -4 782 255 62 5 chr4 26790210 26790418 -175537929 + MIR SINE MIR 2 221 -41 457 299 57 0 chr4 26791540 26791744 -175536603 - MIR SINE MIR 0 262 48 270 291 120 8 chr4 26791744 26791861 -175536486 - LTR67 LTR ERVL 0 557 428 295 322 50 33 chr4 26793739 26793860 -175534487 + L2 LINE L2 3146 3268 -4 483 266 131 34 chr4 26795834 26796055 -175532292 - MIR SINE MIR -9 253 12 1837 159 0 13 chr4 26797334 26797642 -175530705 + AluJb SINE Alu 2 305 -7 647 263 18 58 chr4 26797782 26798006 -175530341 + MIR SINE MIR 19 233 -29 410 159 23 34 chr4 26798207 26798295 -175530052 - MIR SINE MIR -34 228 142 1338 212 90 40 chr4 26798395 26798772 -175529575 - MSTD LTR MaLR 0 396 1 381 291 69 26 chr4 26798822 26799011 -175529336 + MLT1J LTR MaLR 307 503 -8 2025 107 41 3 chr4 26799230 26799520 -175528827 - AluSx SINE Alu -9 303 3 228 111 0 0 chr4 26799575 26799611 -175528736 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 220 220 0 51 chr4 26799627 26799686 -175528661 + MIR3 SINE MIR 15 70 -138 249 226 16 16 chr4 26799901 26799963 -175528384 + (TAG)n Simple_repeat Simple_repeat 1 62 0 318 132 0 0 chr4 26800635 26800688 -175527659 + (ATG)n Simple_repeat Simple_repeat 3 55 0 835 200 16 60 chr4 26800743 26800979 -175527368 + L1ME3 LINE L1 5934 6162 -8 264 203 95 0 chr4 26801042 26801116 -175527231 + L1ME4a LINE L1 6000 6080 -41 238 304 14 14 chr4 26801920 26801989 -175526358 + L2 LINE L2 3199 3267 -5 221 81 0 27 chr4 26802271 26802308 -175526039 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 231 316 119 68 chr4 26802572 26802866 -175525481 - L2 LINE L2 -32 3240 2932 302 280 17 86 chr4 26803855 26804027 -175524320 - MIR SINE MIR -53 209 50 216 339 0 0 chr4 26804214 26804273 -175524074 - L2 LINE L2 -9 3263 3205 337 296 50 36 chr4 26804507 26804727 -175523620 - L2 LINE L2 -425 2889 2667 266 352 66 11 chr4 26805526 26805708 -175522639 + L2 LINE L2 2897 3088 -184 262 254 180 74 chr4 26807584 26807706 -175520641 - L2 LINE L2 0 3272 3138 208 321 0 0 chr4 26807866 26807922 -175520425 + L2 LINE L2 3201 3256 -16 1540 195 0 7 chr4 26808357 26808664 -175519683 + AluJb SINE Alu 1 305 -7 874 277 25 4 chr4 26809195 26809402 -175518945 - L1ME1 LINE L1 -5 6161 5947 2203 92 3 10 chr4 26809402 26809716 -175518631 - AluSq SINE Alu -1 312 1 874 277 25 4 chr4 26809716 26809746 -175518601 - L1ME1 LINE L1 -219 5947 5919 665 137 8 16 chr4 26809746 26809870 -175518477 + L1MA10 LINE L1 6212 6334 0 457 111 0 0 chr4 26809993 26810056 -175518291 + MER66B LTR ERV1 295 357 -129 1656 225 37 31 chr4 26810128 26810506 -175517841 - L1ME1 LINE L1 -491 5675 5281 2185 104 3 0 chr4 26810506 26810815 -175517532 - AluSg SINE Alu 0 310 1 1656 225 37 31 chr4 26810815 26811006 -175517341 - L1ME1 LINE L1 -885 5281 5093 405 58 0 0 chr4 26811020 26811072 -175517275 + (TG)n Simple_repeat Simple_repeat 1 52 0 1988 118 0 0 chr4 26811072 26811352 -175516995 - AluSq SINE Alu -33 280 1 846 257 107 65 chr4 26811354 26811766 -175516581 + MLT1J LTR MaLR 41 469 -42 1844 133 14 0 chr4 26811981 26812314 -175516033 - AluSq SINE Alu 0 337 1 455 178 23 62 chr4 26812795 26812924 -175515423 - MIR SINE MIR -34 228 105 296 277 12 0 chr4 26812941 26813024 -175515323 + MLT1K LTR MaLR 26 109 -479 1836 154 36 109 chr4 26813326 26813820 -175514527 - MLT1C LTR MaLR -9 458 1 1683 167 10 16 chr4 26814032 26814343 -175514004 + AluJo SINE Alu 1 309 -3 184 255 21 85 chr4 26815076 26815170 -175513177 - MER5A DNA MER1_type -10 179 92 1541 178 36 111 chr4 26815170 26815193 -175513154 - MLT1C LTR MaLR 0 467 444 2130 104 7 126 chr4 26815193 26815606 -175512741 + THE1B LTR MaLR 1 364 0 1541 178 36 111 chr4 26815606 26816063 -175512284 - MLT1C LTR MaLR -23 444 18 314 333 10 10 chr4 26816100 26816196 -175512151 - MER5A DNA MER1_type -91 98 3 217 407 93 7 chr4 26816196 26816330 -175512017 - L2 LINE L2 -50 3222 3077 665 212 143 25 chr4 26816345 26816548 -175511799 + MIR SINE MIR 36 262 0 274 314 12 12 chr4 26816702 26816788 -175511559 - L2 LINE L2 -4 3268 3183 377 313 18 9 chr4 26816963 26817075 -175511272 + L2 LINE L2 3159 3271 -1 195 256 0 0 chr4 26817887 26817930 -175510417 + L2 LINE L2 3267 3309 -4 31 76 0 0 chr4 26818363 26818429 -175509918 + GC_rich Low_complexity Low_complexity 1 66 0 210 265 20 20 chr4 26818516 26818663 -175509684 + (CCG)n Simple_repeat Simple_repeat 1 147 0 29 84 0 0 chr4 26818678 26818749 -175509598 + GC_rich Low_complexity Low_complexity 1 71 0 353 274 123 0 chr4 26818947 26819053 -175509294 + L2 LINE L2 3191 3309 -4 758 141 0 16 chr4 26819290 26819418 -175508929 + AluJb SINE Alu 13 138 -174 331 301 68 28 chr4 26819426 26819602 -175508745 + MER113 DNA MER1_type? 339 521 0 272 277 79 10 chr4 26819678 26819779 -175508568 - MIR SINE MIR -56 206 99 240 35 0 0 chr4 26820002 26820031 -175508316 + (A)n Simple_repeat Simple_repeat 1 29 0 795 232 98 54 chr4 26820063 26820378 -175507969 + MLT1H LTR MaLR 217 545 -4 342 0 0 0 chr4 26822404 26822442 -175505905 + (TG)n Simple_repeat Simple_repeat 2 39 0 221 242 187 22 chr4 26824810 26824901 -175503446 - L2 LINE L2 -3 3269 3164 374 39 0 0 chr4 26825046 26825097 -175503250 + L1MB4 LINE L1 6118 6168 -12 239 314 0 0 chr4 26825347 26825417 -175502930 + MIR3 SINE MIR 104 173 -35 439 319 0 35 chr4 26825550 26825691 -175502656 - MIR3 SINE MIR -60 148 13 1035 219 102 104 chr4 26825726 26826313 -175502034 - MLT1H1 LTR MaLR -2 553 1 370 141 370 22 chr4 26826652 26826744 -175501603 + L2 LINE L2 3180 3303 -10 322 245 41 31 chr4 26826772 26826870 -175501477 - MIR SINE MIR 0 262 164 196 296 104 72 chr4 26827340 26827465 -175500882 - MIR SINE MIR -112 150 22 1006 210 39 63 chr4 26827494 26827847 -175500500 - MLT1B LTR MaLR -1 389 4 400 277 39 92 chr4 26828901 26829107 -175499240 - L2 LINE L2 -7 3306 3112 272 195 24 37 chr4 26829394 26829476 -175498871 - MLT1J LTR MaLR -8 503 423 513 248 68 31 chr4 26829623 26829784 -175498563 - MLT1J LTR MaLR -268 243 77 185 289 0 22 chr4 26829872 26829917 -175498430 - L3 LINE CR1 -27 1550 1507 1746 249 91 75 chr4 26829944 26830526 -175497821 - MLT1G LTR MaLR -4 583 1 490 304 39 67 chr4 26830552 26830864 -175497483 - MLT1G-int LTR MaLR -31 1340 1038 213 121 0 0 chr4 26831114 26831147 -175497200 + (TTTTG)n Simple_repeat Simple_repeat 5 37 0 2048 106 10 13 chr4 26831527 26831828 -175496519 + AluSq SINE Alu 1 300 -13 507 270 122 39 chr4 26831830 26832060 -175496287 - MLT1G-int LTR MaLR -833 538 290 2175 230 72 22 chr4 26832207 26832759 -175495588 - MLT1G LTR MaLR 0 590 11 193 283 0 0 chr4 26834189 26834242 -175494105 + L2 LINE L2 2838 2890 -424 533 161 14 1 chr4 26834270 26834369 -175493978 + MLT1D LTR MaLR 367 505 0 979 288 60 62 chr4 26835650 26836083 -175492264 + MLT1J2 LTR MaLR 21 447 -3 318 222 0 91 chr4 26836808 26836907 -175491440 + L1MC4 LINE L1 6614 6703 -1339 32 0 0 0 chr4 26836910 26836942 -175491405 + AT_rich Low_complexity Low_complexity 1 32 0 461 214 47 107 chr4 26836942 26837193 -175491154 - MLT1I LTR MaLR 0 413 202 255 235 88 0 chr4 26837204 26837272 -175491075 - MLT1J2 LTR MaLR -304 146 73 344 337 101 17 chr4 26837527 26837705 -175490642 + MLT1K LTR MaLR 54 246 -342 198 0 0 0 chr4 26838316 26838338 -175490009 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 1589 86 9 0 chr4 26838459 26838679 -175489668 - AluY SINE Alu -7 304 83 2086 249 57 29 chr4 26889424 26890477 -175437870 + L1MEc LINE L1 2001 3052 -3488 435 306 9 0 chr4 26890477 26890588 -175437759 + MER81 DNA DNA 1 112 -2 2086 249 57 29 chr4 26890588 26890704 -175437643 + L1MEc LINE L1 3052 3163 -3377 7309 57 12 5 chr4 26890710 26892038 -175436309 + L1PA4 LINE L1 112 6056 -493 3325 31 0 0 chr4 26892060 26892452 -175435895 + L1PA4 LINE L1 6157 6548 -1 21 0 0 0 chr4 26892452 26892473 -175435874 + AT_rich Low_complexity Low_complexity 1 21 0 2472 211 123 152 chr4 26892544 26893437 -175434910 + L1MEc LINE L1 273 1191 -5349 408 153 0 0 chr4 26893437 26893496 -175434851 + AluJ/FLAM SINE Alu 1 59 -253 1482 190 7 7 chr4 26893496 26893765 -175434582 + AluJo SINE Alu 28 296 -16 2472 211 123 152 chr4 26893765 26894978 -175433369 + L1MEc LINE L1 1189 2374 -4166 1188 225 38 12 chr4 26894972 26895314 -175433033 + L1MEc LINE L1 3156 3506 -3034 * 2365 109 64 0 chr4 26895331 26895661 -175432686 + LTR18A LTR ERVL 7 357 0 33713 168 9 3 chr4 26895685 26900911 -175427436 + HERVL18 LTR ERVL 791 6047 0 2137 155 38 0 chr4 26900912 26901229 -175427118 + LTR18A LTR ERVL 1 329 -28 * 2692 143 65 10 chr4 26901223 26901743 -175426604 + MER4B LTR ERV1 47 772 -7 644 234 0 41 chr4 26901764 26901821 -175426526 + L1MA10 LINE L1 6171 6229 -105 3998 173 26 29 chr4 26901821 26901841 -175426506 + MER4E LTR ERV1 1 20 -759 1646 154 14 0 chr4 26901841 26902160 -175426187 - AluJb SINE Alu 0 323 1 3998 173 26 29 chr4 26902160 26902920 -175425427 + MER4E LTR ERV1 20 779 0 644 234 0 41 chr4 26902920 26903033 -175425314 + L1MA10 LINE L1 6229 6334 0 630 293 50 33 chr4 26903036 26903336 -175425011 + MLT1K LTR MaLR 275 579 -9 266 293 129 26 chr4 26904140 26904256 -175424091 + L2 LINE L2 3137 3264 -8 429 226 0 32 chr4 26904443 26904598 -175423749 + G-rich Low_complexity Low_complexity 1 150 0 297 143 20 0 chr4 26904620 26904669 -175423678 - MLT1K LTR MaLR -343 245 196 277 191 9 38 chr4 26904933 26905038 -175423309 + GA-rich Low_complexity Low_complexity 2 103 0 322 234 174 36 chr4 26905044 26905211 -175423136 + MLT1K LTR MaLR 396 585 -3 2189 94 0 23 chr4 26905426 26905735 -175422612 + AluSx SINE Alu 1 302 -10 780 259 137 50 chr4 26906160 26906519 -175421828 + MLT1K LTR MaLR 197 586 -2 1491 191 11 3 chr4 26906839 26907149 -175421198 + AluJo SINE Alu 1 312 0 1287 197 24 45 chr4 26907149 26907479 -175420868 + MER33 DNA MER1_type 1 323 -1 779 287 109 39 chr4 26907941 26908398 -175419949 - LTR16C LTR ERVL -2 489 1 469 260 73 11 chr4 26908402 26908579 -175419768 + MLT1K LTR MaLR 395 582 -6 21 0 0 0 chr4 26909749 26909770 -175418577 + AT_rich Low_complexity Low_complexity 1 21 0 423 262 29 0 chr4 26910351 26910454 -175417893 + MIR SINE MIR 51 156 -106 2476 130 31 0 chr4 26910461 26910814 -175417533 + THE1B LTR MaLR 1 364 0 273 89 0 0 chr4 26910872 26910917 -175417430 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 188 163 0 20 chr4 26910919 26910968 -175417379 + (CA)n Simple_repeat Simple_repeat 1 48 0 384 22 0 0 chr4 26911022 26911067 -175417280 + (TG)n Simple_repeat Simple_repeat 1 45 0 352 200 0 0 chr4 26911152 26911222 -175417125 - MIR SINE MIR 0 262 193 1083 180 57 87 chr4 26911416 26911653 -175416694 + MER33 DNA MER1_type 2 228 -2357 2270 81 7 3 chr4 26911653 26911961 -175416386 - AluSx SINE Alu -3 309 1 1083 180 57 87 chr4 26911961 26912056 -175416291 + MER33 DNA MER1_type 228 324 0 435 266 50 52 chr4 26912229 26912472 -175415875 + MLT1J LTR MaLR 205 367 -144 268 308 0 0 chr4 26912629 26912707 -175415640 + LTR67 LTR ERVL 32 109 -448 263 253 13 13 chr4 26912794 26912873 -175415474 + LTR67 LTR ERVL 471 549 -8 443 255 0 20 chr4 26913284 26913386 -175414961 + MIR SINE MIR 35 134 -128 685 264 6 13 chr4 26913402 26913561 -175414786 + MER45A DNA AcHobo 21 178 0 226 344 56 0 chr4 26913561 26913686 -175414661 + MIR SINE MIR 128 259 -3 427 261 82 46 chr4 26914771 26914953 -175413394 + MIR3 SINE MIR 6 197 -11 2535 29 7 3 chr4 26914953 26915260 -175413087 - AluY SINE Alu -3 308 1 427 261 82 46 chr4 26915260 26915272 -175413075 + MIR3 SINE MIR 197 207 -1 343 208 22 131 chr4 26915395 26915578 -175412769 - L2 LINE L2 -76 3237 3075 495 222 49 25 chr4 26915653 26915815 -175412532 - MLT1G LTR MaLR 0 542 402 501 248 20 34 chr4 26915861 26916006 -175412341 - MLT1G LTR MaLR -286 304 162 1727 206 134 79 chr4 26916006 26916335 -175412012 + MLT1E1 LTR MaLR 1 310 -344 255 31 0 0 chr4 26916335 26916367 -175411980 + (TC)n Simple_repeat Simple_repeat 1 32 0 2042 153 12 52 chr4 26916377 26916783 -175411564 + MLT1B LTR MaLR 1 390 0 1727 206 134 79 chr4 26916783 26917062 -175411285 + MLT1E1 LTR MaLR 318 654 0 343 221 27 41 chr4 26917062 26917205 -175411142 - MLT1G LTR MaLR -400 155 1 311 216 157 49 chr4 26917797 26917899 -175410448 - L3 LINE CR1 -21 1556 1444 494 240 16 16 chr4 26918587 26918708 -175409639 - MIR SINE MIR -16 246 126 375 244 81 16 chr4 26919186 26919309 -175409038 + MIR SINE MIR 37 167 -95 847 285 9 0 chr4 26919316 26919537 -175408810 - MER58A DNA MER1_type -1 223 1 557 198 23 79 chr4 26919548 26919603 -175408744 - MLT1J LTR MaLR -22 489 432 2001 125 0 10 chr4 26919603 26919899 -175408448 + AluSc SINE Alu 1 293 -16 557 198 23 79 chr4 26919899 26920020 -175408327 - MLT1J LTR MaLR -79 432 323 942 278 92 46 chr4 26920025 26920108 -175408239 - L2 LINE L2 -407 2907 2829 302 0 26 0 chr4 26920108 26920146 -175408201 + (TG)n Simple_repeat Simple_repeat 2 40 0 942 278 92 46 chr4 26920146 26920432 -175407915 - L2 LINE L2 -485 2829 2521 349 293 0 0 chr4 26920589 26920671 -175407676 + L2 LINE L2 3160 3241 -31 1014 103 0 0 chr4 26920671 26920807 -175407540 - AluSc SINE Alu -158 151 16 288 218 64 13 chr4 26921154 26921232 -175407115 + MIR3 SINE MIR 90 171 -37 1386 149 116 11 chr4 26921403 26921671 -175406676 + AluSg SINE Alu 1 296 -14 1110 259 8 4 chr4 26921917 26922172 -175406175 + MIR SINE MIR 7 262 0 216 245 19 0 chr4 26922193 26922246 -175406101 + MIR SINE MIR 73 126 -136 671 258 45 0 chr4 26922246 26922424 -175405923 + MIR SINE MIR 59 244 -18 242 276 126 11 chr4 26922440 26922527 -175405820 - L2 LINE L2 -3 3269 3173 2029 224 171 4 chr4 26924267 26924753 -175403594 - MLT1F1 LTR MaLR 0 567 1 387 294 111 8 chr4 26926659 26926785 -175401562 + MLT1E LTR MaLR 1 139 -454 1798 141 7 10 chr4 26926855 26927145 -175401202 - AluJo SINE Alu -21 291 3 211 281 91 74 chr4 26927204 26927325 -175401022 + L2 LINE L2 3177 3299 -14 3728 161 25 0 chr4 26933306 26933479 -175394868 + L1MB3 LINE L1 5524 5691 -492 1843 174 80 3 chr4 26933479 26933818 -175394529 + MLT1A1 LTR MaLR 1 365 0 3728 161 25 0 chr4 26933818 26934288 -175394059 + L1MB3 LINE L1 5691 6183 0 593 105 0 9 chr4 26934432 26934537 -175393810 + L1MA8 LINE L1 6185 6288 -3 605 293 13 47 chr4 26934786 26935018 -175393329 + MIR SINE MIR 39 262 0 1033 205 13 61 chr4 26935631 26935860 -175392487 - MIR SINE MIR -30 232 15 641 304 93 23 chr4 26935912 26936383 -175391964 - L1ME4a LINE L1 -108 6013 5510 351 0 0 0 chr4 26936551 26936590 -175391757 + (TG)n Simple_repeat Simple_repeat 2 40 0 2058 103 17 13 chr4 26937234 26937536 -175390811 + AluSx SINE Alu 1 303 -9 358 305 78 21 chr4 26937586 26937727 -175390620 - MIR SINE MIR -95 167 19 1238 258 31 80 chr4 26937888 26938589 -175389758 + L2 LINE L2 2553 3214 -99 2265 102 0 0 chr4 26938589 26938894 -175389453 - AluSg SINE Alu -5 305 1 1238 258 31 80 chr4 26938894 26938990 -175389357 + L2 LINE L2 3214 3313 0 1714 121 0 0 chr4 26939019 26939268 -175389079 + AluSg SINE Alu 60 308 -2 198 297 81 0 chr4 26939443 26939517 -175388830 - MIR SINE MIR -72 190 111 2000 135 3 6 chr4 26939761 26940073 -175388274 + AluJo SINE Alu 1 311 -1 251 309 138 0 chr4 26940912 26941006 -175387341 + L3 LINE CR1 918 1024 -553 205 156 0 0 chr4 26942122 26942154 -175386193 + MIR SINE MIR 221 252 -10 368 301 141 13 chr4 26942538 26942694 -175385653 + MIR SINE MIR 71 246 -16 257 304 0 29 chr4 26943445 26943516 -175384831 + A-rich Low_complexity Low_complexity 2 71 -29 1729 164 10 7 chr4 26943516 26943809 -175384538 + AluJo SINE Alu 6 299 -13 257 304 0 29 chr4 26943809 26943839 -175384508 + A-rich Low_complexity Low_complexity 71 100 0 2433 101 0 0 chr4 26946216 26946524 -175381823 + AluSg SINE Alu 1 308 -2 2210 125 0 0 chr4 26947534 26947829 -175380518 + AluSx SINE Alu 1 295 -17 1045 220 156 42 chr4 26948417 26948946 -175379401 + L2 LINE L2 2729 3313 0 2330 108 0 0 chr4 26950604 26950909 -175377438 + AluY SINE Alu 1 305 -6 231 61 0 0 chr4 26952014 26952047 -175376300 + (ATG)n Simple_repeat Simple_repeat 1 33 0 282 248 103 34 chr4 26952058 26952175 -175376172 - MIR SINE MIR -18 244 120 2368 96 0 0 chr4 26953181 26953474 -175374873 + AluSx SINE Alu 1 293 -19 281 209 88 77 chr4 26956237 26956328 -175372019 - MIR3 SINE MIR -39 169 78 198 0 0 0 chr4 26956344 26956366 -175371981 + (A)n Simple_repeat Simple_repeat 1 22 0 399 296 38 21 chr4 26956849 26957076 -175371271 + MIR SINE MIR 18 248 -14 195 42 0 0 chr4 26959045 26959069 -175369278 + (CA)n Simple_repeat Simple_repeat 2 25 0 285 264 129 12 chr4 26959073 26959236 -175369111 - MER5A DNA MER1_type -7 182 1 201 291 0 18 chr4 26959650 26959760 -175368587 + C-rich Low_complexity Low_complexity 6 113 0 * 215 200 24 35 chr4 26959680 26959765 -175368582 + (CCG)n Simple_repeat Simple_repeat 1 84 0 23 86 0 0 chr4 26959834 26959892 -175368455 + GC_rich Low_complexity Low_complexity 1 58 0 38 89 0 0 chr4 26959956 26960057 -175368290 + GC_rich Low_complexity Low_complexity 1 101 0 236 276 53 0 chr4 26960628 26960704 -175367643 - MIR SINE MIR -74 188 109 316 261 117 0 chr4 26961325 26961436 -175366911 - MIR SINE MIR -58 204 81 197 235 86 12 chr4 26961754 26961835 -175366512 + MIR SINE MIR 2 88 -174 252 242 234 8 chr4 26961841 26961969 -175366378 + MIR SINE MIR 57 213 -49 630 213 247 0 chr4 26962111 26962285 -175366062 + MER20 DNA MER1_type 3 219 0 214 207 35 0 chr4 26962370 26962428 -175365919 + MIR SINE MIR 90 149 -113 23 0 0 0 chr4 26962664 26962687 -175365660 + AT_rich Low_complexity Low_complexity 1 23 0 1037 333 98 23 chr4 26963028 26963209 -175365138 - L2 LINE L2 -16 3297 3131 2144 138 27 41 chr4 26963209 26963578 -175364769 - THE1B LTR MaLR 0 364 1 1037 333 98 23 chr4 26963578 26964080 -175364267 - L2 LINE L2 -182 3131 2499 2459 55 0 7 chr4 26964080 26964371 -175363976 - AluY SINE Alu -16 295 7 1037 333 98 23 chr4 26964371 26964677 -175363670 - L2 LINE L2 -814 2499 2217 429 347 42 33 chr4 26965524 26965737 -175362610 + MLT1K LTR MaLR 38 252 -336 371 286 6 0 chr4 26965837 26966005 -175362342 - L1M4 LINE L1 -2873 3273 3105 734 80 24 8 chr4 26967226 26967351 -175360996 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 315 260 40 0 chr4 26967533 26967633 -175360714 - L2 LINE L2 -1 3271 3168 236 308 54 8 chr4 26969561 26969691 -175358656 - LTR16A LTR ERVL -314 136 1 1090 151 0 0 chr4 26970199 26970490 -175357857 - FRAM SINE Alu 0 301 11 437 342 71 18 chr4 26970729 26970827 -175357520 - MIR SINE MIR 0 262 171 2163 146 36 33 chr4 26970827 26971190 -175357157 - THE1B LTR MaLR 0 364 1 437 342 71 18 chr4 26971190 26971316 -175357031 - MIR SINE MIR -91 171 26 183 405 0 0 chr4 26971455 26971539 -175356808 - L2 LINE L2 -986 2328 2245 582 299 52 34 chr4 26973125 26973393 -175354954 + L2 LINE L2 2997 3269 -44 223 324 49 10 chr4 26973450 26973552 -175354795 + L2 LINE L2 3167 3272 0 671 211 0 8 chr4 26973791 26973924 -175354423 + FLAM_A SINE Alu 1 132 -1 195 42 0 0 chr4 26974035 26974059 -175354288 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 207 205 24 72 chr4 26974882 26974965 -175353382 + L2 LINE L2 2909 2987 -285 2209 89 0 7 chr4 26975008 26975289 -175353058 + AluSx SINE Alu 1 279 -33 428 0 19 0 chr4 26975290 26975342 -175353005 + (CA)n Simple_repeat Simple_repeat 2 54 0 785 191 38 108 chr4 26975452 26975577 -175352770 - Charlie5 DNA MER1_type -1 2623 2491 2361 169 39 28 chr4 26975577 26976039 -175352308 - MLT1C LTR MaLR 0 467 1 785 191 38 108 chr4 26976039 26976254 -175352093 - Charlie5 DNA MER1_type -133 2491 2307 7483 189 32 17 chr4 26976254 26976290 -175352057 - L1P4 LINE L1 -650 5516 5482 1707 167 0 57 chr4 26976290 26976608 -175351739 - AluJo SINE Alu -12 300 1 7483 189 32 17 chr4 26976608 26977089 -175351258 - L1P4 LINE L1 -684 5482 5009 1407 110 10 0 chr4 26977089 26977298 -175351049 - L1PB2 LINE L1 0 6151 5941 7483 189 32 17 chr4 26977298 26978544 -175349803 - L1P4 LINE L1 -1157 5009 3728 4079 123 5 16 chr4 26978546 26979181 -175349166 + L1PA16 LINE L1 5532 6159 -7 397 223 0 11 chr4 26979181 26979275 -175349072 - Charlie5 DNA MER1_type -312 2300 2208 1581 217 104 7 chr4 26979441 26979856 -175348491 - LTR43 LTR ERV1 -21 581 127 296 137 20 0 chr4 26979958 26980009 -175348338 - LTR60 LTR ERV1 -534 52 1 289 296 130 12 chr4 26980137 26980310 -175348037 - MIR SINE MIR -67 141 3 2746 82 6 0 chr4 26981005 26981358 -175346989 + THE1A LTR MaLR 1 355 0 398 218 30 60 chr4 26981432 26981566 -175346781 - MIR SINE MIR -22 186 56 310 260 32 52 chr4 26981914 26982068 -175346279 + MIR SINE MIR 32 182 -80 240 54 108 0 chr4 26982085 26982122 -175346225 - MER106A DNA MER1_type -47 189 149 1861 169 3 3 chr4 26982224 26982526 -175345821 - AluJo SINE Alu -5 307 6 505 275 183 50 chr4 26983081 26983193 -175345154 - L2 LINE L2 -4 3309 3213 1919 164 0 3 chr4 26983193 26983492 -175344855 - AluJo SINE Alu -13 299 2 505 275 183 50 chr4 26983492 26984017 -175344330 - L2 LINE L2 -100 3213 2568 354 251 211 0 chr4 26984215 26984386 -175343961 - MIR SINE MIR -10 252 46 195 69 0 0 chr4 26984633 26984662 -175343685 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 2348 187 37 24 chr4 26985776 26986267 -175342080 - MLT1D LTR MaLR -8 497 1 256 265 176 24 chr4 26986395 26986565 -175341782 + LTR33A LTR ERVL 9 204 -319 436 128 115 0 chr4 26986707 26986785 -175341562 + MER4A LTR ERV1 1 87 -577 1876 116 0 32 chr4 26986821 26987106 -175341241 + MER4A LTR ERV1 388 663 -1 392 221 32 0 chr4 26987107 26987202 -175341145 + LTR33A LTR ERVL 416 513 -10 243 320 39 33 chr4 26987231 26987384 -175340963 + MARNA DNA Mariner 95 248 -338 1306 211 124 75 chr4 26987453 26987642 -175340705 - MLT1D LTR MaLR -27 467 289 4016 114 62 3 chr4 26987642 26988220 -175340127 + LTR9 LTR ERV1 1 612 0 1306 211 124 75 chr4 26988220 26988400 -175339947 - MLT1D LTR MaLR -205 289 79 5308 62 3 12 chr4 26988400 26989066 -175339281 - PABL_A LTR ERV1 0 660 1 1306 211 124 75 chr4 26989066 26989150 -175339197 - MLT1D LTR MaLR -415 79 1 288 77 0 0 chr4 26989186 26989225 -175339122 + (CA)n Simple_repeat Simple_repeat 1 39 0 264 292 11 0 chr4 26989228 26989317 -175339030 + MARNA DNA Mariner 262 351 -235 245 261 261 0 chr4 26990341 26990456 -175337891 - MIR SINE MIR -34 228 84 276 280 33 71 chr4 26990462 26990644 -175337703 - MER104 DNA Tc2 -4 176 2 274 278 89 11 chr4 26990928 26991018 -175337329 - L2 LINE L2 -33 3280 3184 302 250 0 0 chr4 26991396 26991460 -175336887 + MIR SINE MIR 19 82 -180 435 300 88 19 chr4 26991579 26991839 -175336508 - L2 LINE L2 -538 2776 2499 1220 230 111 35 chr4 26991999 26992433 -175335914 + MLT1C LTR MaLR 1 467 0 538 275 6 35 chr4 26992621 26992792 -175335555 + MLT1J LTR MaLR 20 185 -326 1395 191 48 29 chr4 26992861 26993176 -175335171 + MER33 DNA MER1_type 1 321 -3 330 250 0 14 chr4 26993187 26993259 -175335088 + MER58A DNA MER1_type 1 71 -36 2190 122 0 0 chr4 26993281 26993575 -175334772 - AluJb SINE Alu -18 294 1 789 257 6 0 chr4 26993580 26993755 -175334592 + MER58A DNA MER1_type 40 215 -9 296 231 61 61 chr4 26993752 26993899 -175334448 + MLT1J LTR MaLR 321 467 -44 * 2061 144 39 33 chr4 26994904 26995266 -175333081 - THE1B LTR MaLR 0 364 1 2181 144 36 25 chr4 26995888 26996248 -175332099 + THE1B LTR MaLR 1 364 0 468 318 93 24 chr4 26996306 26996595 -175331752 + L2 LINE L2 2818 3126 -146 468 224 110 68 chr4 26996753 26997012 -175331335 - L1ME LINE L1 -502 5619 5353 248 300 46 39 chr4 26997734 26997864 -175330483 + L2 LINE L2 3179 3309 -4 213 283 33 0 chr4 26997864 26997924 -175330423 + (AATTG)n Simple_repeat Simple_repeat 1 62 0 1045 219 218 27 chr4 26997994 26998425 -175329922 - LTR33A LTR ERVL 0 523 48 430 237 244 6 chr4 26999029 26999185 -175329162 + MIR SINE MIR 67 259 -3 2112 109 7 0 chr4 26999202 26999506 -175328841 - AluY SINE Alu -4 307 2 707 303 38 41 chr4 26999552 26999895 -175328452 + L2 LINE L2 2931 3272 0 2093 123 0 0 chr4 27000144 27000446 -175327901 + AluSx SINE Alu 5 306 -6 376 261 48 0 chr4 27000769 27000887 -175327460 - MIR SINE MIR -60 148 65 685 262 89 11 chr4 27000973 27001164 -175327183 - MIR SINE MIR -11 251 46 771 182 62 17 chr4 27001183 27001359 -175326988 - MER53 DNA DNA -4 185 2 2326 122 42 14 chr4 27002239 27002593 -175325754 + THE1B LTR MaLR 1 364 0 554 273 94 28 chr4 27002616 27002961 -175325386 - MLT1J2 LTR MaLR -8 401 54 1317 148 15 38 chr4 27003124 27003273 -175325074 + L1MB3 LINE L1 5925 6067 -116 2365 107 11 29 chr4 27003273 27003655 -175324692 - THE1C LTR MaLR 0 375 1 1317 148 15 38 chr4 27003655 27003768 -175324579 + L1MB3 LINE L1 6067 6181 -2 414 0 0 0 chr4 27003777 27003823 -175324524 + (TA)n Simple_repeat Simple_repeat 1 46 0 607 234 17 17 chr4 27004166 27004341 -175324006 + MER5B DNA MER1_type 4 178 0 283 310 101 8 chr4 27004379 27004508 -175323839 + MIR SINE MIR 9 149 -113 583 290 43 6 chr4 27005655 27005817 -175322530 + MIR SINE MIR 84 251 -11 360 267 114 0 chr4 27006316 27006421 -175321926 + MER5B DNA MER1_type 5 121 -57 971 148 0 0 chr4 27006422 27006608 -175321739 - AluSg/x SINE Alu 0 320 135 195 227 23 0 chr4 27006608 27006652 -175321695 + MER5B DNA MER1_type 112 156 -22 339 113 0 0 chr4 27006774 27006827 -175321520 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 510 231 70 48 chr4 27007364 27007696 -175320651 + MLT1H LTR MaLR 73 453 -96 1855 149 62 37 chr4 27007696 27008051 -175320296 - THE1B LTR MaLR 0 364 1 510 231 70 48 chr4 27008051 27008147 -175320200 + MLT1H LTR MaLR 453 545 -4 789 192 31 92 chr4 27008307 27008536 -175319811 + Charlie4 DNA MER1_type 1 215 -1746 * 914 208 38 0 chr4 27008535 27008747 -175319600 + Charlie4 DNA MER1_type 1742 1961 0 801 251 15 5 chr4 27009117 27009312 -175319035 - MIR SINE MIR 0 262 66 563 150 24 203 chr4 27009330 27009537 -175318810 + MER5B DNA MER1_type 1 170 -8 2797 144 19 0 chr4 27010007 27010423 -175317924 + MSTB LTR MaLR 1 424 -2 344 143 18 0 chr4 27010566 27010622 -175317725 - LTR40a LTR ERVL -2 517 461 1329 130 0 5 chr4 27010622 27010814 -175317533 + AluSx SINE Alu 1 191 -121 1227 226 112 25 chr4 27010849 27011243 -175317104 - LTR40c LTR ERVL -37 428 1 455 283 110 21 chr4 27011254 27011445 -175316902 + L2 LINE L2 3106 3313 0 775 219 6 12 chr4 27011841 27012013 -175316334 + MIR SINE MIR 55 224 -38 2234 170 66 25 chr4 27012253 27012694 -175315653 - LTR2B LTR ERV1 0 490 32 409 174 221 74 chr4 27012998 27013147 -175315200 - MIR SINE MIR -42 220 50 1821 181 132 50 chr4 27013162 27013274 -175315073 + MLT1D LTR MaLR 5 106 -399 2034 100 0 4 chr4 27013274 27013555 -175314792 - AluSg SINE Alu -23 287 8 1821 181 132 50 chr4 27013555 27013905 -175314442 + MLT1D LTR MaLR 106 505 0 644 261 206 9 chr4 27014072 27014290 -175314057 + MIR SINE MIR 2 262 0 963 122 0 0 chr4 27014311 27014458 -175313889 - AluJb SINE Alu -2 310 164 530 168 0 137 chr4 27015064 27015195 -175313152 + MER81 DNA DNA 2 114 0 264 276 94 16 chr4 27015453 27015580 -175312767 - MLT1L LTR MaLR -13 602 466 634 231 26 6 chr4 27015924 27016080 -175312267 + MER5B DNA MER1_type 3 161 -17 813 209 110 16 chr4 27016092 27016283 -175312064 - MER3 DNA MER1_type 0 209 1 681 312 32 12 chr4 27016374 27016627 -175311720 + MIR SINE MIR 2 259 -3 203 237 85 0 chr4 27016953 27017012 -175311335 + MIR SINE MIR 85 148 -60 411 38 0 0 chr4 27018170 27018223 -175310124 + (GA)n Simple_repeat Simple_repeat 2 54 0 656 284 5 5 chr4 27018419 27018609 -175309738 + MIR SINE MIR 23 212 -50 1692 175 0 3 chr4 27018801 27019087 -175309260 + AluJo SINE Alu 1 285 -27 694 236 50 16 chr4 27019461 27019643 -175308704 - MER5A DNA MER1_type -1 188 1 1666 161 7 3 chr4 27020055 27020340 -175308007 + AluJo SINE Alu 1 286 -26 435 212 179 57 chr4 27020504 27020821 -175307526 - MLT1H LTR MaLR 0 590 151 2144 158 40 21 chr4 27020850 27021279 -175307068 - LTR56 LTR ERV1 0 445 9 307 230 167 32 chr4 27021284 27021410 -175306937 + LTR50 LTR ERVL 154 296 -499 742 212 161 43 chr4 27021412 27021631 -175306716 + LTR50 LTR ERVL 503 758 -37 2080 126 0 0 chr4 27021631 27021933 -175306414 + AluSx SINE Alu 1 302 -10 742 212 161 43 chr4 27021933 27021968 -175306379 + LTR50 LTR ERVL 758 787 -8 573 259 98 92 chr4 27021997 27022465 -175305882 - MLT1L LTR MaLR -22 593 123 2569 132 47 0 chr4 27023343 27023752 -175304595 + MSTA LTR MaLR 1 428 0 205 95 24 24 chr4 27023872 27023914 -175304433 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 281 164 100 0 chr4 27023971 27024081 -175304266 + (TA)n Simple_repeat Simple_repeat 1 121 0 2183 82 10 0 chr4 27024127 27024421 -175303926 - AluSg1 SINE Alu -12 297 1 195 302 0 0 chr4 27024475 27024518 -175303829 - MIR SINE MIR -164 98 56 197 347 116 16 chr4 27025827 27025948 -175302399 - MER5A DNA MER1_type -3 186 54 396 228 86 41 chr4 27026513 27026710 -175301637 + L1ME4a LINE L1 5463 5668 -453 203 365 24 0 chr4 27026731 27026816 -175301531 - L2 LINE L2 -1 3312 3226 274 317 0 0 chr4 27026875 27026979 -175301368 + L1ME4a LINE L1 5721 5824 -297 805 161 0 0 chr4 27026985 27027115 -175301232 + AluJo/FLAM SINE Alu 2 131 -171 1826 99 92 0 chr4 27027117 27027379 -175300968 + AluSg SINE Alu 1 286 -24 27 0 0 0 chr4 27027388 27027415 -175300932 + AT_rich Low_complexity Low_complexity 1 27 0 1978 147 0 0 chr4 27027424 27027730 -175300617 + AluSx SINE Alu 1 306 -6 329 245 185 46 chr4 27027758 27027974 -175300373 + L1ME4a LINE L1 5850 6095 -26 954 93 11 33 chr4 27028027 27028210 -175300137 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 356 0 0 22 chr4 27028211 27028256 -175300091 + (GAAAA)n Simple_repeat Simple_repeat 1 44 0 183 156 0 0 chr4 27029547 27029579 -175298768 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 2012 194 13 18 chr4 27029631 27030023 -175298324 - MLT2D LTR ERVL -14 400 11 821 230 0 0 chr4 27030040 27030218 -175298129 - L1PB4 LINE L1 -2 6154 5977 467 312 113 23 chr4 27031264 27031485 -175296862 - MIR SINE MIR -2 260 20 1985 144 0 3 chr4 27031518 27031830 -175296517 + AluSx SINE Alu 1 311 -1 757 96 16 8 chr4 27031830 27031955 -175296392 + (GGAA)n Simple_repeat Simple_repeat 2 127 0 383 291 16 16 chr4 27031979 27032106 -175296241 - MER5B DNA MER1_type -51 127 1 216 0 0 0 chr4 27032733 27032757 -175295590 + (A)n Simple_repeat Simple_repeat 1 24 0 348 24 0 0 chr4 27033042 27033083 -175295264 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 459 339 192 32 chr4 27033422 27033917 -175294430 - L3 LINE CR1 -970 607 34 655 203 165 0 chr4 27034094 27034252 -175294095 - MIR SINE MIR -77 185 2 2828 143 26 0 chr4 27034664 27035119 -175293228 + MLT1C LTR MaLR 1 467 0 1735 181 0 0 chr4 27035699 27036002 -175292345 + AluJo SINE Alu 1 303 -9 294 314 16 33 chr4 27036012 27036133 -175292214 + GA-rich Low_complexity Low_complexity 2 120 0 555 185 161 19 chr4 27036254 27036416 -175291931 - MER46C DNA MER2_type -127 211 27 484 324 44 5 chr4 27037045 27037228 -175291119 + MIR SINE MIR 11 200 -62 355 157 0 0 chr4 27037897 27037948 -175290399 - MLT1J LTR MaLR -202 309 259 409 282 87 32 chr4 27038037 27038239 -175290108 + MLT1H1 LTR MaLR 48 264 -326 2041 110 31 0 chr4 27038283 27038575 -175289772 + AluSq SINE Alu 1 301 -12 621 299 40 5 chr4 27038674 27038875 -175289472 + MIR SINE MIR 17 224 -38 244 237 39 135 chr4 27038922 27039078 -175289269 + L2 LINE L2 3118 3258 -14 1150 274 60 62 chr4 27039111 27039612 -175288735 - MLT1J LTR MaLR -6 505 6 494 232 32 24 chr4 27040713 27040838 -175287509 - MIR SINE MIR -48 214 89 281 283 18 18 chr4 27040984 27041097 -175287250 - MIR3 SINE MIR -2 206 94 289 348 99 25 chr4 27041395 27041556 -175286791 - MIR SINE MIR -29 233 61 1613 164 85 35 chr4 27041566 27041884 -175286463 + MER58B DNA MER1_type 4 337 -4 540 219 152 44 chr4 27044842 27045184 -175283163 + L1MC5 LINE L1 7547 7925 -36 511 249 200 24 chr4 27045600 27045805 -175282542 - MIR SINE MIR 0 262 22 408 304 88 11 chr4 27046180 27046361 -175281986 - LTR16A LTR ERVL -6 444 250 187 344 0 16 chr4 27046556 27046617 -175281730 - L2 LINE L2 -526 2788 2729 509 226 73 37 chr4 27046669 27046833 -175281514 - L2 LINE L2 -2 3311 3142 396 240 260 0 chr4 27046847 27046993 -175281354 + MER5A DNA MER1_type 4 187 -2 1557 213 76 126 chr4 27047042 27047955 -175280392 - L2 LINE L2 -226 3087 2223 394 302 127 21 chr4 27048402 27048591 -175279756 - MIR SINE MIR -4 258 50 32 26 0 0 chr4 27048978 27049017 -175279330 + AT_rich Low_complexity Low_complexity 1 39 0 29 28 0 0 chr4 27049964 27050000 -175278347 + AT_rich Low_complexity Low_complexity 1 36 0 246 222 0 0 chr4 27051481 27051535 -175276812 + MER103 DNA DNA 48 101 -65 1108 149 85 0 chr4 27052184 27052385 -175275962 - MER20 DNA MER1_type -1 218 1 810 145 8 0 chr4 27055794 27055911 -175272436 - AluJb SINE Alu -194 118 1 544 271 159 62 chr4 27056529 27057235 -175271112 + L2 LINE L2 2521 3283 -30 316 135 37 0 chr4 27057347 27057411 -175270936 + FLAM SINE Alu 63 107 -26 21 82 0 0 chr4 27057461 27057510 -175270837 + AT_rich Low_complexity Low_complexity 1 49 0 1752 107 8 4 chr4 27058296 27058538 -175269809 + AluSx SINE Alu 1 243 -69 680 59 0 0 chr4 27058538 27058623 -175269724 - AluSq/x SINE Alu -204 108 24 714 266 62 17 chr4 27061815 27062058 -175266289 + MIR SINE MIR 6 256 -6 1861 154 3 35 chr4 27062788 27063107 -175265240 + AluJb SINE Alu 1 309 -3 711 197 0 16 chr4 27063154 27063276 -175265071 + FLAM_A SINE Alu 2 121 -12 297 0 0 0 chr4 27063276 27063309 -175265038 + (TG)n Simple_repeat Simple_repeat 2 34 0 254 311 68 0 chr4 27063412 27063486 -175264861 - L2 LINE L2 -1 3271 3193 15728 128 10 2 chr4 27063782 27067178 -175261169 + L1PA10 LINE L1 2746 6155 -13 828 110 0 25 chr4 27067306 27067424 -175260923 + FLAM_C SINE Alu 14 128 -15 27 0 0 0 chr4 27067424 27067451 -175260896 + AT_rich Low_complexity Low_complexity 1 27 0 226 309 4 64 chr4 27067725 27067836 -175260511 + MER5A DNA MER1_type 1 116 -73 216 257 276 19 chr4 27068139 27068244 -175260103 + L2 LINE L2 3182 3313 0 2063 95 4 0 chr4 27068340 27068604 -175259743 - AluSc SINE Alu -9 300 36 225 357 38 38 chr4 27068604 27068789 -175259558 - L2 LINE L2 -605 2709 2525 473 279 201 5 chr4 27069401 27069605 -175258742 + MIR SINE MIR 3 246 -16 349 225 34 0 chr4 27069717 27069806 -175258541 + L2 LINE L2 1912 2003 -1311 1621 199 10 0 chr4 27069806 27070102 -175258245 - MER2 DNA MER2_type 0 345 47 2258 225 190 26 chr4 27070117 27070950 -175257397 + L2 LINE L2 2015 3065 -248 2165 113 0 0 chr4 27070950 27071243 -175257104 + AluSx SINE Alu 1 293 -19 2258 225 190 26 chr4 27071243 27071519 -175256828 + L2 LINE L2 3065 3295 -18 1323 173 72 36 chr4 27072152 27072588 -175255759 - L1ME1 LINE L1 -6 6160 5342 2153 83 45 3 chr4 27073014 27073302 -175255045 + AluSg SINE Alu 1 300 -10 521 145 65 16 chr4 27074155 27074279 -175254068 + L1MA8 LINE L1 6150 6279 -12 238 276 29 57 chr4 27074392 27074497 -175253850 - MIR SINE MIR -6 256 155 985 263 219 19 chr4 27075707 27076378 -175251969 + L2 LINE L2 2489 3308 -5 28 79 0 0 chr4 27076706 27076769 -175251578 + AT_rich Low_complexity Low_complexity 1 63 0 425 278 116 37 chr4 27076863 27077026 -175251321 + MIR SINE MIR 28 214 -48 2631 46 0 3 chr4 27077026 27077332 -175251015 + AluY SINE Alu 1 305 -6 425 278 116 37 chr4 27077332 27077384 -175250963 + MIR SINE MIR 214 260 -2 1206 157 9 9 chr4 27077583 27077812 -175250535 + L1MA4A LINE L1 6063 6291 -12 1645 159 10 30 chr4 27078019 27078321 -175250026 - AluY SINE Alu -15 296 1 458 254 33 16 chr4 27078887 27079009 -175249338 + MLT1K LTR MaLR 465 588 0 517 271 141 17 chr4 27079305 27079482 -175248865 - L2 LINE L2 0 3313 3115 495 216 39 20 chr4 27079484 27079637 -175248710 - MER104 DNA Tc2 -18 162 7 1712 151 68 4 chr4 27079679 27079957 -175248390 + AluJb SINE Alu 1 296 -16 438 329 96 10 chr4 27080162 27080417 -175247930 - L2 LINE L2 -271 3042 2750 22 103 0 0 chr4 27081228 27081306 -175247041 + AT_rich Low_complexity Low_complexity 1 78 0 24 0 0 0 chr4 27083564 27083588 -175244759 + AT_rich Low_complexity Low_complexity 1 24 0 2554 42 0 13 chr4 27085376 27085683 -175242664 + AluY SINE Alu 1 303 -8 2352 83 0 13 chr4 27086006 27086319 -175242028 + AluY SINE Alu 1 309 -2 513 207 44 30 chr4 27086755 27086927 -175241420 + MLT1F LTR MaLR 13 198 -351 * 623 227 81 22 chr4 27086921 27087106 -175241241 + MLT1F LTR MaLR 347 542 0 2324 72 0 3 chr4 27087123 27087428 -175240919 - AluY SINE Alu -7 304 1 577 116 21 0 chr4 27087574 27087669 -175240678 - L1M4 LINE L1 -748 5436 5340 1692 174 3 10 chr4 27087670 27087963 -175240384 + AluJo SINE Alu 1 291 -21 746 239 75 43 chr4 27088050 27088238 -175240109 - MIR SINE MIR -49 213 20 756 234 87 64 chr4 27088639 27088886 -175239461 + MLT1K LTR MaLR 260 517 -71 2339 102 0 0 chr4 27088886 27089190 -175239157 - AluSg1 SINE Alu -5 304 1 756 234 87 64 chr4 27089190 27089254 -175239093 + MLT1K LTR MaLR 517 578 -10 825 158 23 0 chr4 27089293 27089426 -175238921 - FRAM SINE Alu -5 171 36 1480 182 22 4 chr4 27089513 27089782 -175238565 + AluJo SINE Alu 1 274 -38 1224 120 0 0 chr4 27089885 27090052 -175238295 + AluSg/x SINE Alu 129 295 -17 1662 253 37 6 chr4 27090328 27090358 -175237989 - L1ME1 LINE L1 0 6166 6138 2064 135 0 0 chr4 27090358 27090647 -175237700 - AluSg SINE Alu -21 289 1 1662 253 37 6 chr4 27090647 27091098 -175237249 - L1ME1 LINE L1 -28 6138 5670 1177 122 0 17 chr4 27091099 27091271 -175237076 - AluSg/x SINE Alu -9 301 133 1230 228 56 0 chr4 27091271 27091574 -175236773 - L1ME1 LINE L1 -475 5691 5372 1455 201 101 16 chr4 27091621 27092031 -175236316 - MER114 LTR ERV -76 572 123 1973 133 38 62 chr4 27092031 27092431 -175235916 - MLT1B LTR MaLR 0 390 1 1455 201 101 16 chr4 27092431 27092448 -175235899 - MER114 LTR ERV -525 123 109 298 208 134 59 chr4 27092688 27092890 -175235457 - L1ME4a LINE L1 -2 6119 5903 305 158 48 26 chr4 27092906 27092996 -175235351 - L1MA9 LINE L1 -24 6267 6169 1078 137 11 0 chr4 27093071 27093246 -175235101 + AluSq SINE Alu 137 313 0 2261 116 0 0 chr4 27093900 27094202 -175234145 - AluSx SINE Alu -10 302 1 249 108 0 0 chr4 27094205 27094242 -175234105 + (TTC)n Simple_repeat Simple_repeat 2 38 0 25 51 0 0 chr4 27095258 27095297 -175233050 + AT_rich Low_complexity Low_complexity 1 39 0 2061 117 0 13 chr4 27095635 27095943 -175232404 + AluSx SINE Alu 1 304 -8 275 0 29 0 chr4 27096633 27096668 -175231679 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 243 241 113 120 chr4 27097045 27097311 -175231036 + L2 LINE L2 3050 3313 0 1857 253 64 19 chr4 27097325 27097902 -175230445 + LTR26 LTR ERV1 1 603 0 1623 171 146 22 chr4 27098029 27098398 -175229949 - MER63B DNA MER1_type -21 415 1 281 288 198 27 chr4 27098487 27098598 -175229749 + L2 LINE L2 3137 3266 -6 281 298 79 0 chr4 27099262 27099376 -175228971 - MIR SINE MIR -71 191 69 277 219 16 31 chr4 27099376 27099440 -175228907 + MLT1L LTR MaLR 1 63 -552 869 175 0 25 chr4 27099502 27099662 -175228685 - AluJb SINE Alu -19 293 138 472 289 41 91 chr4 27099697 27100039 -175228308 + MLT1L LTR MaLR 197 521 -94 2133 99 7 26 chr4 27100097 27100401 -175227946 - AluSx SINE Alu -14 298 1 1357 224 62 9 chr4 27100439 27100778 -175227569 + L1ME3 LINE L1 5581 5937 -225 516 102 20 61 chr4 27100781 27100879 -175227468 + THE1C LTR MaLR 199 292 -83 864 214 43 51 chr4 27101154 27101388 -175226959 + L1ME3 LINE L1 5925 6156 -6 486 254 77 86 chr4 27101475 27101620 -175226727 - MIR SINE MIR -49 213 69 2137 130 3 3 chr4 27101620 27101919 -175226428 - AluSx SINE Alu -13 299 1 486 254 77 86 chr4 27101919 27101982 -175226365 - MIR SINE MIR -193 69 7 875 153 0 29 chr4 27102089 27102226 -175226121 + FLAM_C SINE Alu 1 133 0 389 264 166 5 chr4 27102261 27102454 -175225893 + L1ME4a LINE L1 5684 5907 -214 1923 199 5 5 chr4 27102538 27102940 -175225407 - L1PB1 LINE L1 -1640 4506 4105 * 6636 134 6 2 chr4 27102939 27104568 -175223779 + L1PB1 LINE L1 4520 6151 0 258 279 93 16 chr4 27104793 27104922 -175223425 + L1ME4a LINE L1 5967 6105 -16 388 230 206 8 chr4 27105244 27105370 -175222977 - MER5B DNA MER1_type -2 176 26 329 269 74 67 chr4 27105997 27106146 -175222201 - MIR SINE MIR -106 156 7 240 111 0 0 chr4 27106866 27106902 -175221445 + (TCCA)n Simple_repeat Simple_repeat 2 37 0 247 227 173 40 chr4 27107116 27107266 -175221081 + L1ME4a LINE L1 5947 6116 -5 1737 167 3 7 chr4 27107414 27107696 -175220651 + AluJo SINE Alu 1 281 -31 447 68 0 0 chr4 27107707 27107722 -175220625 + (CA)n Simple_repeat Simple_repeat 1 74 0 447 68 0 0 chr4 27107722 27107781 -175220566 + (CA)n Simple_repeat Simple_repeat 2 60 0 2505 151 5 3 chr4 27107849 27108239 -175220108 + MER89 LTR ERV1 167 557 -2 2078 135 7 0 chr4 27108400 27108703 -175219644 - AluSx SINE Alu -7 305 1 196 194 0 0 chr4 27108868 27108904 -175219443 + L2 LINE L2 3195 3230 -83 343 280 182 15 chr4 27109265 27109397 -175218950 + MIR SINE MIR 39 192 -70 1706 156 36 26 chr4 27109426 27109832 -175218515 + MER89 LTR ERV1 2 510 -49 4974 241 58 65 chr4 27109837 27111504 -175216843 + MER89-int LTR ERV1 1 1654 -5147 1658 197 67 11 chr4 27111544 27111919 -175216428 + MER89-int LTR ERV1 1650 2045 -4756 1473 214 84 49 chr4 27111920 27112290 -175216057 + MSTD LTR MaLR 1 383 -13 2173 226 39 22 chr4 27112293 27112784 -175215563 + MER89-int LTR ERV1 2033 2531 -4270 362 326 39 34 chr4 27112840 27113073 -175215274 + MER89-int LTR ERV1 139 372 -4275 2377 219 71 56 chr4 27113182 27113826 -175214521 + MER89-int LTR ERV1 2603 3256 -3545 1465 122 0 0 chr4 27113844 27114040 -175214307 + AluSg/x SINE Alu 88 283 -27 26 0 0 0 chr4 27114040 27114066 -175214281 + AT_rich Low_complexity Low_complexity 1 26 0 203 266 47 16 chr4 27114265 27114329 -175214018 + MER5A DNA MER1_type 124 189 0 2249 96 0 10 chr4 27114842 27115143 -175213204 + AluSq SINE Alu 1 298 -15 2145 253 53 42 chr4 27115163 27116148 -175212199 + L1M4 LINE L1 2204 3199 -2947 589 306 105 54 chr4 27116181 27116700 -175211647 + L2 LINE L2 2550 3123 -149 2113 128 3 0 chr4 27116700 27116997 -175211350 - AluSx SINE Alu -13 299 2 589 306 105 54 chr4 27116997 27117153 -175211194 + L2 LINE L2 3123 3270 -2 300 328 38 23 chr4 27117968 27118099 -175210248 + MIR SINE MIR 22 154 -108 3314 117 54 14 chr4 27118547 27119067 -175209280 - LTR38B LTR ERV1 -12 598 58 611 256 19 25 chr4 27120263 27120423 -175207924 + MIR SINE MIR 15 173 -89 1898 143 3 7 chr4 27120461 27120754 -175207593 + AluJo SINE Alu 1 292 -20 778 278 78 46 chr4 27120964 27121075 -175207272 + MLT1H LTR MaLR 123 229 -320 1875 177 55 3 chr4 27121075 27121402 -175206945 + MER2 DNA MER2_type 1 344 0 778 278 78 46 chr4 27121402 27121700 -175206647 + MLT1H LTR MaLR 229 545 -4 188 228 18 0 chr4 27121874 27121931 -175206416 + CT-rich Low_complexity Low_complexity 3 60 0 368 276 199 6 chr4 27122021 27122177 -175206170 + MER5A DNA MER1_type 3 188 -1 246 32 0 0 chr4 27122359 27122390 -175205957 + (TG)n Simple_repeat Simple_repeat 2 32 0 2041 134 3 3 chr4 27122976 27123275 -175205072 - AluJb SINE Alu -13 299 1 1132 227 174 8 chr4 27123646 27123811 -175204536 + L1MD2 LINE L1 5944 6080 -279 234 0 0 0 chr4 27123811 27123837 -175204510 + (CA)n Simple_repeat Simple_repeat 1 26 0 1132 227 174 8 chr4 27123837 27124028 -175204319 + L1MD2 LINE L1 6080 6359 0 1517 129 43 56 chr4 27124033 27124335 -175204012 + AluSx SINE Alu 1 298 -14 346 318 45 19 chr4 27124921 27125075 -175203272 + MER5A DNA MER1_type 9 166 -23 * 510 293 18 18 chr4 27124942 27125106 -175203241 - MER5A DNA MER1_type -22 167 4 192 77 0 0 chr4 27126196 27126222 -175202125 + (A)n Simple_repeat Simple_repeat 1 26 0 683 183 0 0 chr4 27126229 27126333 -175202014 + FLAM_A SINE Alu 21 124 -18 189 263 0 0 chr4 27126462 27126519 -175201828 - MIR SINE MIR -42 220 164 214 174 22 22 chr4 27126621 27126667 -175201680 - MIR SINE MIR -62 146 101 506 216 140 77 chr4 27126993 27127215 -175201132 + MLT1C LTR MaLR 5 240 -227 826 169 8 0 chr4 27127305 27127435 -175200912 + AluSg SINE Alu 1 131 -179 290 306 41 20 chr4 27127816 27127914 -175200433 - L2 LINE L2 0 3313 3214 1961 168 43 27 chr4 27128495 27128864 -175199483 + THE1C LTR MaLR 1 375 0 242 252 67 59 chr4 27129796 27129915 -175198432 - MER20 DNA MER1_type -18 201 82 918 150 13 7 chr4 27130141 27130294 -175198053 + FRAM SINE Alu 1 150 -26 339 248 111 0 chr4 27130337 27130454 -175197893 + MIR SINE MIR 48 177 -85 841 256 8 23 chr4 27130728 27130994 -175197353 + L1ME2 LINE L1 4936 5197 -949 1229 247 11 96 chr4 27131036 27131128 -175197219 + L1ME2 LINE L1 5743 5841 -323 2121 112 17 17 chr4 27131128 27131424 -175196923 + AluSx SINE Alu 3 298 -14 2397 94 0 0 chr4 27131424 27131722 -175196625 + AluSg SINE Alu 1 298 -12 1229 247 11 96 chr4 27131722 27131897 -175196450 + L1ME2 LINE L1 5840 5960 -204 1946 163 3 3 chr4 27131897 27132198 -175196149 + AluJb SINE Alu 1 301 -11 1229 247 11 96 chr4 27132198 27132377 -175195970 + L1ME2 LINE L1 5960 6153 -11 1449 178 82 4 chr4 27132704 27132985 -175195362 - AluJb SINE Alu -9 303 1 1748 138 55 38 chr4 27133409 27133699 -175194648 + AluSx SINE Alu 1 295 -17 306 50 0 0 chr4 27135369 27135409 -175192938 + (CA)n Simple_repeat Simple_repeat 2 41 0 307 340 61 14 chr4 27135469 27135616 -175192731 + MIR3 SINE MIR 7 160 -48 * 337 346 68 92 chr4 27135614 27135906 -175192441 - L2 LINE L2 0 3272 2988 5679 136 23 32 chr4 27135980 27136567 -175191780 - MER4D LTR ERV1 0 903 312 1849 148 3 20 chr4 27136567 27136864 -175191483 + AluJb SINE Alu 9 300 -12 2127 107 37 3 chr4 27136866 27137165 -175191182 + AluSq SINE Alu 1 309 -4 5679 136 23 32 chr4 27137165 27137485 -175190862 - MER4D LTR ERV1 -592 311 1 2942 133 25 11 chr4 27137485 27137959 -175190388 - LTR29 LTR ERV1 -5 617 137 528 327 20 39 chr4 27138137 27138391 -175189956 + MLT1L LTR MaLR 8 256 -359 2856 179 56 6 chr4 27138394 27138914 -175189433 - MER21A LTR ERV1 -14 917 372 1116 169 56 60 chr4 27138912 27139178 -175189169 - MER21A LTR ERV1 -666 265 1 * 1955 139 52 3 chr4 27139178 27139485 -175188862 + MLT2C1 LTR ERVL 25 346 -51 281 74 463 0 chr4 27139486 27139540 -175188807 - MADE1 DNA Mariner -1 79 1 270 344 79 16 chr4 27139601 27139790 -175188557 - L2 LINE L2 -437 2877 2677 1308 110 105 5 chr4 27139792 27140001 -175188346 + MER30 DNA MER1_type 1 230 0 1346 300 50 37 chr4 27140038 27140632 -175187715 + MLT1L LTR MaLR 8 609 -6 362 322 34 7 chr4 27140639 27140785 -175187562 - L2 LINE L2 -656 2658 2509 1778 192 92 32 chr4 27141671 27141956 -175186391 + MLT1C LTR MaLR 5 272 -195 1968 129 81 31 chr4 27141956 27142313 -175186034 - THE1C LTR MaLR 0 375 1 10541 120 13 55 chr4 27142314 27143393 -175184954 - THE1C-int LTR MaLR -1 1579 593 1905 100 8 8 chr4 27143393 27143652 -175184695 - AluSp SINE Alu -1 312 54 10541 120 13 55 chr4 27143652 27144219 -175184128 - THE1C-int LTR MaLR -987 593 3 1890 110 99 71 chr4 27144221 27144291 -175184056 - THE1C LTR MaLR 0 375 308 2086 124 7 20 chr4 27144291 27144589 -175183758 - AluSx SINE Alu -18 294 1 1890 110 99 71 chr4 27144589 27144883 -175183464 - THE1C LTR MaLR -67 308 1 1778 192 92 32 chr4 27144883 27145029 -175183318 + MLT1C LTR MaLR 272 467 0 1860 153 3 7 chr4 27145197 27145485 -175182862 - AluJb SINE Alu -25 287 1 36 62 0 0 chr4 27145596 27145660 -175182687 + AT_rich Low_complexity Low_complexity 1 64 0 180 311 0 0 chr4 27145768 27145813 -175182534 + L2 LINE L2 3213 3257 -15 526 266 8 31 chr4 27146050 27146178 -175182169 + MIR SINE MIR 25 149 -113 1183 124 0 0 chr4 27146445 27146626 -175181721 + AluSq SINE Alu 131 311 0 2185 136 0 132 chr4 27146671 27147170 -175181177 - Tigger2a DNA MER2_type -1 433 1 1422 197 114 57 chr4 27147226 27147395 -175180952 + MER110A LTR ERV1 22 180 -288 930 153 0 0 chr4 27147395 27147526 -175180821 + FLAM_C SINE Alu 1 131 -2 1422 197 114 57 chr4 27147526 27147777 -175180570 + MER110A LTR ERV1 180 466 -2 3081 167 65 0 chr4 27147790 27148316 -175180031 + MER68 LTR ERV1 3 562 0 282 378 91 0 chr4 27148676 27148819 -175179528 - L2 LINE L2 -206 3066 2911 554 283 47 33 chr4 27149032 27149157 -175179190 + MIR SINE MIR 13 144 -118 3220 69 0 0 chr4 27149157 27149532 -175178815 - THE1C LTR MaLR 0 375 1 554 283 47 33 chr4 27149532 27149618 -175178729 + MIR SINE MIR 144 227 -35 987 209 0 71 chr4 27150060 27150285 -175178062 + AluJo SINE Alu 3 211 -101 1658 191 17 0 chr4 27150388 27150682 -175177665 + AluJo SINE Alu 1 299 -13 767 196 38 119 chr4 27150882 27151173 -175177174 - MLT1D LTR MaLR -170 297 25 869 159 0 14 chr4 27151194 27151339 -175177008 + FLAM_C SINE Alu 1 143 0 880 198 12 77 chr4 27151381 27151629 -175176718 - LTR4 LTR ERV1 0 596 365 712 258 85 74 chr4 27151741 27152094 -175176253 - LTR4 LTR ERV1 -239 357 1 717 202 0 0 chr4 27152101 27152225 -175176122 + FRAM SINE Alu 41 164 -12 1418 110 19 0 chr4 27152415 27152624 -175175723 + LTR24C LTR ERV1 1 213 -422 * 2524 90 8 31 chr4 27152620 27152975 -175175372 - THE1B LTR MaLR -17 347 1 2090 139 82 31 chr4 27152975 27153328 -175175019 + LTR24C LTR ERV1 225 601 -34 2149 133 7 0 chr4 27153328 27153630 -175174717 + AluSx SINE Alu 1 304 -8 2090 139 82 31 chr4 27153630 27153665 -175174682 + LTR24C LTR ERV1 601 633 -2 207 296 61 76 chr4 27153773 27153905 -175174442 + L2 LINE L2 2925 3054 -218 502 263 43 62 chr4 27154188 27154397 -175173950 + MER21B LTR ERV1 508 712 -151 444 317 48 0 chr4 27154422 27154589 -175173758 + Charlie2b DNA MER1_type 233 407 -2455 322 242 0 0 chr4 27154612 27154678 -175173669 + Charlie2b DNA MER1_type 575 640 -2142 1237 209 92 31 chr4 27154706 27154792 -175173555 + Charlie2a DNA MER1_type 1466 1545 -1317 1522 176 23 33 chr4 27154792 27155093 -175173254 - AluJo SINE Alu -14 298 1 1237 209 92 31 chr4 27155093 27155703 -175172644 + Charlie2a DNA MER1_type 1545 2267 -595 2224 263 35 45 chr4 27155735 27156816 -175171531 + L1ME LINE L1 59 1127 -4953 2822 118 25 9 chr4 27156816 27157247 -175171100 + MER57-int LTR ERV1 3165 3602 -3935 2407 201 113 35 chr4 27157247 27157913 -175170434 - MER50 LTR ERV1 0 734 17 781 81 57 0 chr4 27157927 27158050 -175170297 + MER57-int LTR ERV1 3600 3729 -3808 1063 261 61 52 chr4 27158064 27158445 -175169902 + L1ME LINE L1 1174 1550 -4711 1987 145 60 23 chr4 27158445 27158796 -175169551 - THE1B LTR MaLR 0 364 1 1063 261 61 52 chr4 27158796 27159152 -175169195 + L1ME LINE L1 1550 1956 -4305 2175 125 7 0 chr4 27159152 27159449 -175168898 + AluSq SINE Alu 1 299 -14 1063 261 61 52 chr4 27159449 27159653 -175168694 + L1ME LINE L1 1956 2157 -4104 1351 108 0 6 chr4 27159659 27159835 -175168512 + AluSq SINE Alu 1 175 -138 1973 152 43 137 chr4 27159835 27160440 -175167907 - LTR34 LTR ERV1 -151 548 1 914 240 131 3 chr4 27160440 27160511 -175167836 + L1ME LINE L1 2825 2886 -3194 1541 182 6 59 chr4 27160511 27160835 -175167512 + AluJo SINE Alu 1 307 -5 914 240 131 3 chr4 27160835 27161121 -175167226 + L1ME LINE L1 2886 3228 -2852 221 202 173 0 chr4 27161124 27161228 -175167119 - L2 LINE L2 -76 3237 3116 186 43 0 0 chr4 27161412 27161435 -175166912 + (CCG)n Simple_repeat Simple_repeat 2 24 0 669 137 16 48 chr4 27163373 27163497 -175164850 + FLAM_C SINE Alu 8 127 -16 22 0 0 0 chr4 27163627 27163649 -175164698 + AT_rich Low_complexity Low_complexity 1 22 0 271 57 0 170 chr4 27163651 27163740 -175164607 + Alu SINE Alu 239 318 0 2126 110 0 10 chr4 27163753 27164044 -175164303 + AluSx SINE Alu 5 292 -20 278 328 86 0 chr4 27164718 27164834 -175163513 - MIR SINE MIR 0 262 137 1834 128 53 0 chr4 27164875 27165141 -175163206 - AluSq SINE Alu -33 280 1 358 125 0 0 chr4 27165171 27165219 -175163128 + Alu SINE Alu 1 48 -255 926 148 0 56 chr4 27165223 27165385 -175162962 + FRAM SINE Alu 12 164 -12 193 179 8 0 chr4 27165385 27165427 -175162920 - MIR SINE MIR -89 119 75 6882 93 182 50 chr4 27165916 27168161 -175160186 - Harlequin LTR ERV1 0 8399 505 839 155 22 84 chr4 27168159 27168481 -175159866 - Harlequin LTR ERV1 -5755 1141 840 * 36278 80 35 5 chr4 27168482 27173265 -175155082 - Harlequin LTR ERV1 -3455 4944 17 329 100 140 0 chr4 27173265 27173288 -175155059 - Harlequin LTR ERV1 -8331 68 39 4305 101 217 102 chr4 27173288 27174654 -175153693 - pTR5 LTR ERV1 0 2438 172 253 311 53 99 chr4 27174855 27175138 -175153209 - L2 LINE L2 -6 3266 2997 1982 151 7 0 chr4 27175191 27175482 -175152865 - AluJo SINE Alu -15 297 5 323 245 99 80 chr4 27175782 27175994 -175152353 - L2 LINE L2 -6 3307 3092 9974 65 13 62 chr4 27176296 27177736 -175150611 - SVA Other Other -3 1383 14 1765 106 12 4 chr4 27177746 27178002 -175150345 + L1PA12 LINE L1 5808 6065 -103 389 78 0 0 chr4 27178031 27178082 -175150265 + U2 snRNA snRNA 1 51 -137 693 84 84 0 chr4 27178082 27178189 -175150158 + L1PA13 LINE L1 6048 6163 0 1410 218 77 20 chr4 27178195 27178636 -175149711 - L2 LINE L2 -625 2689 2224 396 250 8 16 chr4 27178690 27178814 -175149533 - L2 LINE L2 -1845 1469 1347 1082 264 138 9 chr4 27178814 27179257 -175149090 - L2 LINE L2 -2091 1223 724 2178 94 3 10 chr4 27179296 27179619 -175148728 - AluSq SINE Alu 0 321 1 1729 156 7 20 chr4 27180103 27180405 -175147942 - AluJo SINE Alu -14 298 1 2002 107 43 0 chr4 27181272 27181552 -175146795 - AluSx SINE Alu -20 292 1 318 326 92 0 chr4 27181681 27181822 -175146525 - L2 LINE L2 0 3313 3160 2517 63 3 0 chr4 27181905 27182205 -175146142 - AluY SINE Alu -10 301 1 691 209 0 15 chr4 27183123 27183257 -175145090 - FLAM_A SINE Alu -1 132 1 507 174 0 31 chr4 27183306 27183404 -175144943 - AluJb SINE Alu -81 231 137 1727 185 24 0 chr4 27183414 27183711 -175144636 - AluJb SINE Alu -8 304 1 1760 171 13 26 chr4 27184551 27184856 -175143491 - AluJb SINE Alu -11 301 1 303 234 203 0 chr4 27184856 27184984 -175143363 + MIR SINE MIR 97 250 -12 2219 108 7 7 chr4 27185708 27186004 -175142343 - AluSx SINE Alu -16 296 1 27 0 0 0 chr4 27186010 27186037 -175142310 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr4 27186063 27186102 -175142245 + AT_rich Low_complexity Low_complexity 1 39 0 587 61 12 0 chr4 27187119 27187201 -175141146 - AluY SINE Alu -227 84 2 2314 113 0 6 chr4 27187521 27187832 -175140515 - AluSg SINE Alu -1 309 1 373 227 118 0 chr4 27188130 27188249 -175140098 - L2 LINE L2 0 3313 3181 21 0 0 0 chr4 27189023 27189044 -175139303 + AT_rich Low_complexity Low_complexity 1 21 0 1827 157 7 14 chr4 27189049 27189343 -175139004 + AluJb SINE Alu 3 294 -18 1063 181 0 16 chr4 27189707 27189895 -175138452 + FAM SINE Alu 1 49 0 1010 170 19 0 chr4 27189906 27190065 -175138282 + FRAM SINE Alu 1 162 -14 2053 119 0 30 chr4 27191989 27192291 -175136056 - AluSx SINE Alu -19 293 1 1307 86 27 16 chr4 27192589 27192775 -175135572 + MER30 DNA MER1_type 43 230 0 675 259 12 6 chr4 27192810 27192980 -175135367 + MER5A DNA MER1_type 19 189 0 451 222 19 0 chr4 27193188 27193296 -175135051 + MIR SINE MIR 147 256 -6 303 28 0 0 chr4 27193560 27193591 -175134756 + (CA)n Simple_repeat Simple_repeat 1 67 0 303 28 0 0 chr4 27193591 27193627 -175134720 + (CA)n Simple_repeat Simple_repeat 2 37 0 846 158 0 0 chr4 27193824 27193957 -175134390 - FLAM_C SINE Alu 0 133 1 639 191 191 0 chr4 27194587 27194775 -175133572 + L1ME2 LINE L1 5804 6027 -137 314 218 13 0 chr4 27194790 27194868 -175133479 + L1MA10 LINE L1 6247 6325 -9 560 153 0 0 chr4 27194964 27195049 -175133298 + AluJ/FLAM SINE Alu 2 86 -226 1116 162 0 0 chr4 27195138 27195305 -175133042 + AluJb SINE Alu 131 297 -15 1857 135 94 15 chr4 27195837 27196177 -175132170 - THE1C LTR MaLR 0 375 9 23 0 0 0 chr4 27196619 27196642 -175131705 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr4 27197054 27197094 -175131253 + AT_rich Low_complexity Low_complexity 1 40 0 1971 143 3 10 chr4 27197540 27197841 -175130506 + AluJb SINE Alu 1 299 -13 2403 97 3 0 chr4 27197864 27198172 -175130175 + AluSq SINE Alu 1 309 -4 395 251 152 81 chr4 27198530 27198937 -175129410 - L1M4 LINE L1 -3235 2911 2476 989 161 6 12 chr4 27199138 27199299 -175129048 - AluJo SINE Alu -32 280 121 189 147 0 0 chr4 27199677 27199711 -175128636 + (T)n Simple_repeat Simple_repeat 1 34 0 236 228 53 0 chr4 27199823 27199880 -175128467 + L2 LINE L2 3213 3272 0 * 344 345 92 16 chr4 27199879 27200358 -175127989 - L2 LINE L2 -1147 2167 1641 849 174 0 0 chr4 27200359 27200491 -175127856 + FRAM SINE Alu 1 132 -44 976 191 0 13 chr4 27200891 27201043 -175127304 + FRAM SINE Alu 2 151 -15 2433 80 0 7 chr4 27202306 27202608 -175125739 + AluSq SINE Alu 1 300 -13 1710 121 8 20 chr4 27202806 27203087 -175125260 + AluSx SINE Alu 36 313 0 676 227 195 16 chr4 27203282 27203590 -175124757 + MLT1J2 LTR MaLR 67 429 -21 485 138 43 32 chr4 27203747 27203841 -175124506 + AluJ/FLAM SINE Alu 2 96 -216 1674 150 19 0 chr4 27203944 27204244 -175124103 + AluJo SINE Alu 13 317 0 807 155 9 0 chr4 27204373 27204489 -175123858 + FLAM_C SINE Alu 2 118 -25 279 79 0 0 chr4 27204489 27204527 -175123820 + (CAAT)n Simple_repeat Simple_repeat 1 38 0 833 249 24 19 chr4 27204959 27205168 -175123179 + L2 LINE L2 3104 3313 0 321 89 0 0 chr4 27205350 27205395 -175122952 + (TG)n Simple_repeat Simple_repeat 2 46 0 2407 108 0 0 chr4 27207750 27208056 -175120291 - AluSx SINE Alu -6 306 1 1705 149 43 11 chr4 27209039 27209321 -175119026 + AluJo SINE Alu 4 294 -18 892 121 0 8 chr4 27209324 27209448 -175118899 + FLAM_C SINE Alu 1 123 -20 249 232 0 0 chr4 27209488 27209544 -175118803 + L1ME2 LINE L1 4006 4061 -2085 1468 214 51 37 chr4 27209546 27209966 -175118381 - MLT1D LTR MaLR -1 504 88 2659 210 105 50 chr4 27210020 27211103 -175117244 + L1ME2 LINE L1 4058 5293 -885 1895 136 36 0 chr4 27211103 27211382 -175116965 + AluSx SINE Alu 1 289 -23 2659 210 105 50 chr4 27211382 27211533 -175116814 + L1ME2 LINE L1 5293 5434 -744 1389 215 123 12 chr4 27211537 27211942 -175116405 + L1ME2 LINE L1 5594 6043 -121 3554 118 2 29 chr4 27211942 27212460 -175115887 - L1PA10 LINE L1 -9 6159 5656 2344 73 0 10 chr4 27212461 27212764 -175115583 + AluY SINE Alu 1 300 -11 1759 151 148 20 chr4 27213565 27213909 -175114438 + MLT1B LTR MaLR 1 388 -2 1489 139 5 0 chr4 27214095 27214311 -175114036 - AluSg/x SINE Alu -11 299 83 1660 154 7 25 chr4 27214324 27214628 -175113719 - AluJb SINE Alu 0 307 9 642 299 15 20 chr4 27214854 27215058 -175113289 - L1ME3A LINE L1 -287 5883 5681 1477 179 0 12 chr4 27215125 27215415 -175112932 + AluJb SINE Alu 43 312 0 323 266 50 0 chr4 27215471 27215590 -175112757 - L1ME1 LINE L1 -6 6164 6037 * 808 198 115 10 chr4 27215589 27215781 -175112566 + L1P3 LINE L1 8 219 -5656 908 234 15 54 chr4 27216216 27216477 -175111870 + L1P3 LINE L1 259 509 -5366 22410 177 14 17 chr4 27216485 27217080 -175111267 + L1P3 LINE L1 692 1287 -5174 180 77 0 0 chr4 27217080 27217106 -175111241 + (CAA)n Simple_repeat Simple_repeat 2 27 0 22410 177 14 17 chr4 27217106 27221025 -175107322 + L1P3 LINE L1 1287 5210 -1251 2134 109 0 55 chr4 27221140 27221469 -175106878 - AluSx SINE Alu -1 311 1 303 283 90 0 chr4 27221539 27221684 -175106663 - L1MC5 LINE L1 -542 7419 7262 4652 153 72 30 chr4 27221944 27222028 -175106319 - L1MA9 LINE L1 -22 6290 6211 234 0 0 0 chr4 27222028 27222054 -175106293 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2115 102 29 0 chr4 27222054 27222328 -175106019 - AluSx SINE Alu -30 282 1 4652 153 72 30 chr4 27222328 27222361 -175105986 - L1MA9 LINE L1 -101 6211 6181 315 0 0 0 chr4 27222361 27222396 -175105951 + (TG)n Simple_repeat Simple_repeat 2 36 0 4652 153 72 30 chr4 27222396 27222438 -175105909 - L1MA9 LINE L1 -131 6181 6142 1707 201 0 10 chr4 27222438 27222752 -175105595 - AluJo SINE Alu -1 311 1 4652 153 72 30 chr4 27222752 27222782 -175105565 - L1MA9 LINE L1 -170 6142 6115 1714 189 3 25 chr4 27222782 27223100 -175105247 + AluJb SINE Alu 2 312 0 4652 153 72 30 chr4 27223100 27224382 -175103965 - L1MA9 LINE L1 -197 6115 4758 22 0 0 0 chr4 27224605 27224627 -175103720 + AT_rich Low_complexity Low_complexity 1 22 0 265 302 82 40 chr4 27224889 27225040 -175103307 + MIR SINE MIR 34 192 -67 2532 59 0 3 chr4 27226360 27226664 -175101683 - AluY SINE Alu -8 303 1 321 327 88 9 chr4 27226684 27226715 -175101632 - MIR SINE MIR -26 236 209 1499 261 54 56 chr4 27226715 27227233 -175101114 + LTR33 LTR ERVL 5 521 0 321 327 88 9 chr4 27227233 27227418 -175100929 - MIR SINE MIR -53 209 3 382 187 166 0 chr4 27227462 27227601 -175100746 - MER20B DNA MER1_type -30 753 592 571 236 81 0 chr4 27227602 27227725 -175100622 + MER7C DNA MER2_type 2 134 -468 953 226 3 132 chr4 27227725 27228043 -175100304 - AluSp SINE Alu -9 304 28 2944 135 11 19 chr4 27228043 27228518 -175099829 + MER7C DNA MER2_type 131 601 -1 2480 52 0 29 chr4 27228660 27228969 -175099378 - AluY SINE Alu -11 300 1 255 247 68 96 chr4 27229327 27229473 -175098874 + MLT1H LTR MaLR 406 547 -2 * 1409 256 97 11 chr4 27229473 27229917 -175098430 - MER20B DNA MER1_type -275 508 27 186 302 136 84 chr4 27229997 27230038 -175098309 - L2 LINE L2 -4 3268 3231 1579 156 28 45 chr4 27230038 27230326 -175098021 - AluJb SINE Alu -18 294 12 186 302 136 84 chr4 27230326 27230592 -175097755 - L2 LINE L2 -41 3231 2945 822 215 47 33 chr4 27230720 27230934 -175097413 - MIR SINE MIR -1 261 45 266 153 0 83 chr4 27231187 27231259 -175097088 + Charlie5 DNA MER1_type 2544 2609 -3 490 88 0 0 chr4 27231259 27231327 -175097020 - L1PB4 LINE L1 0 6156 6089 597 202 65 73 chr4 27231444 27231495 -175096852 - MLT1J LTR MaLR -22 489 439 2376 65 24 0 chr4 27231495 27231786 -175096561 - AluY SINE Alu -13 298 1 2172 122 3 6 chr4 27231786 27232097 -175096250 - AluSx SINE Alu -2 310 1 597 202 65 73 chr4 27232097 27232331 -175096016 - MLT1J LTR MaLR -70 441 166 386 199 160 51 chr4 27232341 27232497 -175095850 + LTR16A1 LTR ERVL 165 337 -120 719 196 119 55 chr4 27232532 27232767 -175095580 - MLT1C LTR MaLR -165 302 53 2138 123 3 3 chr4 27232824 27233124 -175095223 - AluSx SINE Alu -7 305 6 432 0 0 0 chr4 27233184 27233232 -175095115 + (CA)n Simple_repeat Simple_repeat 2 49 0 699 231 122 31 chr4 27234010 27234239 -175094108 - MLT1K LTR MaLR -1 587 338 423 275 78 78 chr4 27234349 27234535 -175093812 + MLT1H LTR MaLR 133 321 -228 1101 31 78 0 chr4 27234535 27234663 -175093684 - MER85 DNA T2_type -1 138 1 423 275 78 78 chr4 27234663 27234694 -175093653 + MLT1H LTR MaLR 320 350 -199 290 231 26 26 chr4 27234880 27234958 -175093389 - MLT1K LTR MaLR -477 111 34 2163 112 0 22 chr4 27235111 27235424 -175092923 + AluSg SINE Alu 3 308 -2 1360 179 108 54 chr4 27235515 27235940 -175092407 - LTR7 LTR ERV1 -2 448 1 242 226 19 0 chr4 27236581 27236634 -175091713 - MER4D LTR ERV1 -72 800 747 889 241 34 30 chr4 27236960 27237225 -175091122 - L1M4 LINE L1 -1380 4766 4501 2459 64 0 49 chr4 27237226 27237553 -175090794 - AluY SINE Alu 0 311 1 845 144 0 0 chr4 27237589 27237714 -175090633 - FLAM_C SINE Alu -18 125 1 834 220 57 40 chr4 27237719 27238015 -175090332 - L1M4 LINE L1 -1663 4483 4183 1457 156 42 26 chr4 27239285 27239592 -175088755 + AluJb SINE Alu 1 312 0 1670 207 23 20 chr4 27240119 27240472 -175087875 - MLT1A1 LTR MaLR -11 354 1 354 212 92 13 chr4 27240694 27240830 -175087517 - L1M2 LINE L1 -358 5816 5666 4891 176 34 6 chr4 27241186 27241393 -175086954 - L1MB4 LINE L1 -1 6179 5979 1790 161 3 25 chr4 27241393 27241709 -175086638 - AluJo SINE Alu -3 309 1 4891 176 34 6 chr4 27241709 27242613 -175085734 - L1MB4 LINE L1 -201 5979 5040 317 333 74 0 chr4 27242822 27242957 -175085390 + MER117 DNA MER1_type 5 149 -48 2166 121 23 0 chr4 27243120 27243425 -175084922 + AluSx SINE Alu 1 312 0 243 282 230 0 chr4 27243430 27243604 -175084743 - MIR SINE MIR -17 245 32 566 218 56 0 chr4 27244131 27244273 -175084074 - L1MB4 LINE L1 -2426 3720 3571 2010 147 3 0 chr4 27244360 27244653 -175083694 - AluSx SINE Alu -18 294 1 2004 141 0 7 chr4 27245072 27245369 -175082978 + AluJo SINE Alu 1 295 -17 1455 197 45 194 chr4 27245378 27246043 -175082304 + L1ME1 LINE L1 205 968 -5595 528 208 108 15 chr4 27246043 27246173 -175082174 - MER58B DNA MER1_type -3 338 197 1455 197 45 194 chr4 27246173 27246394 -175081953 + L1ME1 LINE L1 968 1220 -5343 1976 148 3 7 chr4 27246394 27246692 -175081655 + AluSx SINE Alu 6 302 -10 1455 197 45 194 chr4 27246692 27246846 -175081501 + L1ME1 LINE L1 1220 1158 -5405 2511 75 0 3 chr4 27246846 27247152 -175081195 + AluSc SINE Alu 1 305 -4 1455 197 45 194 chr4 27247152 27247306 -175081041 + L1ME1 LINE L1 1157 1332 -5231 236 244 145 8 chr4 27247340 27247471 -175080876 + L1ME1 LINE L1 1292 1440 -4944 1856 179 3 0 chr4 27247472 27247774 -175080573 - AluJb SINE Alu -9 303 1 1943 155 0 3 chr4 27247799 27248096 -175080251 + AluJb SINE Alu 3 298 -14 2082 136 0 0 chr4 27248140 27248434 -175079913 + AluSx SINE Alu 1 294 -18 4587 196 36 123 chr4 27248521 27248898 -175079449 + L1ME1 LINE L1 3807 4215 -2187 1670 178 27 7 chr4 27248898 27249196 -175079151 + AluJo SINE Alu 1 304 -8 4587 196 36 123 chr4 27249196 27250199 -175078148 + L1ME1 LINE L1 4215 5304 -1098 1858 228 66 29 chr4 27250199 27250686 -175077661 + MLT1D LTR MaLR 1 505 0 4587 196 36 123 chr4 27250686 27251130 -175077217 + L1ME1 LINE L1 5304 5785 -617 1662 114 18 0 chr4 27251130 27251357 -175076990 + AluSx SINE Alu 17 247 -65 4587 196 36 123 chr4 27251357 27251410 -175076937 + L1ME1 LINE L1 5785 5841 -561 2397 36 23 7 chr4 27251410 27251712 -175076635 - AluY SINE Alu -4 307 1 4587 196 36 123 chr4 27251712 27252360 -175075987 + L1ME1 LINE L1 5841 6095 -307 2163 108 9 29 chr4 27252360 27252675 -175075672 + AluSc SINE Alu 1 309 0 4587 196 36 123 chr4 27252675 27252954 -175075393 + L1ME1 LINE L1 6095 6397 -5 313 277 7 57 chr4 27253006 27253147 -175075200 - MER94 DNA DNA 0 134 1 553 246 95 40 chr4 27253299 27253551 -175074796 + L1MC5 LINE L1 6968 7233 -728 351 62 13 153 chr4 27253809 27253871 -175074476 - L1MB8 LINE L1 0 6178 6125 2061 151 0 10 chr4 27253871 27254176 -175074171 + AluSx SINE Alu 1 302 -10 351 62 13 153 chr4 27254176 27254198 -175074149 - L1MB8 LINE L1 -53 6125 6102 1019 149 16 16 chr4 27254251 27254439 -175073908 + L1MB7 LINE L1 5905 6092 -92 443 191 0 0 chr4 27254439 27254528 -175073819 + AluJ/FRAM SINE Alu 221 309 -3 666 260 177 7 chr4 27254571 27254871 -175073476 + HsTC2 DNA Tc2 4 354 -1544 1010 197 167 23 chr4 27254874 27255016 -175073331 + AluJo SINE Alu 1 121 -284 2178 96 0 0 chr4 27255016 27255317 -175073030 + AluSx SINE Alu 1 301 0 1010 197 167 23 chr4 27255317 27255540 -175072807 + AluJo SINE Alu 121 405 0 836 206 21 5 chr4 27255562 27255756 -175072591 + HsTC2 DNA Tc2 395 591 -1307 2565 49 0 7 chr4 27257278 27257586 -175070761 - AluY SINE Alu -5 306 1 222 37 0 0 chr4 27257718 27257745 -175070602 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1584 107 47 0 chr4 27258059 27258274 -175070073 + AluSg/x SINE Alu 76 300 -10 1405 195 62 0 chr4 27260796 27261068 -175067279 - AluJo SINE Alu -13 299 11 2072 132 0 3 chr4 27261122 27261411 -175066936 + AluSx SINE Alu 1 288 -24 1964 150 3 3 chr4 27261436 27261730 -175066617 + AluJb SINE Alu 1 294 -18 833 179 70 35 chr4 27261975 27262316 -175066031 - L1MB7 LINE L1 -19 6165 5781 2030 145 0 0 chr4 27262445 27262742 -175065605 - AluSx SINE Alu -13 299 3 846 251 118 5 chr4 27262753 27262956 -175065391 - MIR SINE MIR -14 248 23 729 280 34 45 chr4 27263177 27263531 -175064816 - MLT1K LTR MaLR -63 525 176 1891 163 0 10 chr4 27264058 27264352 -175063995 - AluJb SINE Alu -21 291 1 2679 146 54 14 chr4 27264368 27264868 -175063479 - L1MB7 LINE L1 -19 6165 5646 2118 127 26 47 chr4 27264868 27265255 -175063092 - MLT1B LTR MaLR -5 385 7 3928 172 88 4 chr4 27265256 27265831 -175062516 - L1MB7 LINE L1 -538 5646 5120 2325 78 10 0 chr4 27265831 27266124 -175062223 - AluY SINE Alu -15 296 1 3928 172 88 4 chr4 27266124 27266740 -175061607 - L1MB7 LINE L1 -1064 5120 4358 772 175 115 11 chr4 27266788 27266971 -175061376 + Tigger2a DNA MER2_type 1 202 -232 480 157 22 22 chr4 27266971 27267060 -175061287 - FLAM SINE Alu -17 126 38 1085 111 116 28 chr4 27267060 27267208 -175061139 + Tigger2a DNA MER2_type 200 374 -2334 2277 156 45 26 chr4 27267208 27267626 -175060721 + MSTB LTR MaLR 1 426 0 1085 111 116 28 chr4 27267626 27267693 -175060654 + Tigger2a DNA MER2_type 374 434 0 501 170 20 0 chr4 27267696 27267796 -175060551 - L1MB2 LINE L1 -28 6143 6042 329 261 148 21 chr4 27269258 27269400 -175058947 + L3b LINE CR1 1243 1402 -181 951 264 46 4 chr4 27269439 27269678 -175058669 - MIR SINE MIR 0 262 14 346 307 193 8 chr4 27269963 27270201 -175058146 + L1MC/D LINE L1 5260 5541 -2267 2794 24 9 0 chr4 27270220 27270603 -175057744 + L1PA3 LINE L1 5791 6176 0 1824 182 0 0 chr4 27270763 27271059 -175057288 - AluJb SINE Alu -16 296 1 292 327 101 30 chr4 27271765 27272068 -175056279 + L2 LINE L2 2749 3069 -203 570 168 0 0 chr4 27272100 27272201 -175056146 + L1MC1 LINE L1 6233 6333 0 336 238 104 74 chr4 27272270 27272539 -175055808 + Charlie7 DNA MER1_type 472 748 -1864 565 193 77 50 chr4 27272544 27272725 -175055622 + Charlie7 DNA MER1_type 2108 2293 -319 23 0 0 0 chr4 27274265 27274288 -175054059 + AT_rich Low_complexity Low_complexity 1 23 0 2002 143 24 0 chr4 27274379 27274715 -175053632 - MER2 DNA MER2_type 0 344 1 498 244 17 17 chr4 27275870 27275989 -175052358 - L2 LINE L2 -2 3270 3152 2133 113 3 27 chr4 27276206 27276506 -175051841 - AluSx SINE Alu -3 309 17 430 226 226 13 chr4 27276776 27276935 -175051412 + MIR SINE MIR 49 241 -21 221 247 14 68 chr4 27277137 27277210 -175051137 - MIR SINE MIR -123 85 17 267 384 46 13 chr4 27277793 27277944 -175050403 + MER5A DNA MER1_type 34 189 0 2045 133 7 23 chr4 27278366 27278668 -175049679 - AluSx SINE Alu -15 297 1 330 294 17 17 chr4 27279085 27279262 -175049085 - L1ME LINE L1 -355 5766 5590 203 361 0 0 chr4 27279534 27279595 -175048752 + L2 LINE L2 3212 3272 0 * 428 309 184 10 chr4 27279585 27279786 -175048561 + MIR SINE MIR 6 241 -21 462 62 0 186 chr4 27279923 27280020 -175048327 + MADE1 DNA Mariner 2 80 0 873 114 0 23 chr4 27280620 27280751 -175047596 - FLAM_C SINE Alu -5 128 1 376 344 53 13 chr4 27281113 27281264 -175047083 + MIR3 SINE MIR 3 159 -49 301 244 165 8 chr4 27281266 27281393 -175046954 + MER117 DNA MER1_type 2 148 -49 224 345 126 0 chr4 27281898 27281985 -175046362 + L2 LINE L2 3159 3256 -16 1477 286 142 21 chr4 27282840 27283490 -175044857 - L3 LINE CR1 -7 1570 843 182 250 56 69 chr4 27283731 27283760 -175044587 + L3 LINE CR1 463 491 -1086 1034 159 74 0 chr4 27283760 27283936 -175044411 - MER5A DNA MER1_type 0 189 1 182 250 56 69 chr4 27283936 27283978 -175044369 + L3 LINE CR1 491 533 -1044 246 279 29 0 chr4 27284201 27284269 -175044078 - MIR SINE MIR -26 236 167 2372 114 14 46 chr4 27284581 27284948 -175043399 + LTR18A LTR ERVL 3 357 0 2643 191 23 19 chr4 27284974 27285498 -175042849 + HERVL18 LTR ERVL 9 534 -5513 2018 208 63 9 chr4 27285467 27285909 -175042438 + HERVL18 LTR ERVL 1149 1614 -4433 * 259 57 0 0 chr4 27285907 27285942 -175042405 + HERVL18 LTR ERVL 1776 1810 -4237 * 1157 112 77 2 chr4 27285941 27286198 -175042149 + HERVL18 LTR ERVL 2119 2452 -3595 * 4826 177 12 5 chr4 27286197 27287044 -175041303 + HERVL18 LTR ERVL 2720 3572 -2475 643 128 11 0 chr4 27287054 27287148 -175041199 + HERVL18 LTR ERVL 4394 4488 -1559 514 172 30 0 chr4 27287207 27287306 -175041041 + HERVL18 LTR ERVL 5946 6047 0 2185 129 13 76 chr4 27287307 27287688 -175040659 + LTR18A LTR ERVL 1 357 0 21 89 0 0 chr4 27288355 27288411 -175039936 + AT_rich Low_complexity Low_complexity 1 56 0 605 155 54 47 chr4 27288610 27288758 -175039589 - MIR SINE MIR 0 262 114 3557 130 26 16 chr4 27288792 27289408 -175038939 - L1MC1 LINE L1 0 6333 5712 326 303 112 13 chr4 27289815 27289967 -175038380 + L1ME3A LINE L1 5989 6155 -15 344 276 0 0 chr4 27290137 27290213 -175038134 - MIR3 SINE MIR -24 184 109 33 43 0 0 chr4 27290351 27290398 -175037949 + AT_rich Low_complexity Low_complexity 1 47 0 2434 69 0 3 chr4 27292260 27292565 -175035782 - AluY SINE Alu -7 304 1 2331 112 0 0 chr4 27295379 27295683 -175032664 - AluSx SINE Alu -8 304 1 30 27 0 0 chr4 27295948 27295985 -175032362 + AT_rich Low_complexity Low_complexity 1 37 0 323 253 126 77 chr4 27296145 27296327 -175032020 + MIR SINE MIR 2 192 -70 2002 138 3 0 chr4 27297242 27297531 -175030816 - AluSx SINE Alu -22 290 1 199 327 97 12 chr4 27298307 27298443 -175029904 + L3b LINE CR1 1287 1441 -142 2847 131 35 33 chr4 27298443 27298932 -175029415 - LTR2B LTR ERV1 0 490 1 199 327 97 12 chr4 27298932 27298960 -175029387 + L3b LINE CR1 1441 1465 -118 1932 82 47 72 chr4 27299940 27300259 -175028088 + AluSq SINE Alu 1 311 -2 252 263 109 0 chr4 27300500 27300637 -175027710 - L1ME LINE L1 -295 5826 5675 1259 85 149 5 chr4 27300901 27301102 -175027245 - MER30 DNA MER1_type 0 230 1 2011 58 0 149 chr4 27302016 27302364 -175025983 - AluY SINE Alu -15 296 1 404 223 89 27 chr4 27302485 27302597 -175025750 - MER5B DNA MER1_type -14 164 46 390 249 22 50 chr4 27302915 27303096 -175025251 + (CCCCG)n Simple_repeat Simple_repeat 4 179 0 3526 261 121 16 chr4 27304446 27305706 -175022641 - L2 LINE L2 -1772 1542 150 358 318 9 0 chr4 27305874 27305981 -175022366 - MIR SINE MIR -68 140 33 22 35 0 0 chr4 27307156 27307185 -175021162 + AT_rich Low_complexity Low_complexity 1 29 0 1607 148 0 79 chr4 27307256 27307561 -175020786 - AluSx SINE Alu -31 281 1 272 128 26 0 chr4 27307724 27307763 -175020584 + AluJo/FLAM SINE Alu 76 115 -187 848 136 7 21 chr4 27307765 27307905 -175020442 - AluJb SINE Alu -174 138 1 2069 131 3 7 chr4 27308675 27308981 -175019366 + AluSg SINE Alu 1 305 -5 1217 120 0 6 chr4 27309473 27309648 -175018699 + AluSc SINE Alu 135 308 -1 230 223 204 0 chr4 27309649 27309752 -175018595 - Charlie5 DNA MER1_type -2238 374 251 1918 140 6 22 chr4 27309757 27310072 -175018275 + AluSx SINE Alu 1 310 -2 2477 59 0 50 chr4 27310719 27311041 -175017306 - AluY SINE Alu -5 306 1 222 37 0 0 chr4 27311173 27311200 -175017147 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 29 60 0 0 chr4 27311405 27311455 -175016892 + AT_rich Low_complexity Low_complexity 1 50 0 2096 121 13 0 chr4 27311488 27311793 -175016554 + AluSq SINE Alu 1 309 -4 243 282 230 0 chr4 27312229 27312403 -175015944 + MIR SINE MIR 32 245 -17 1757 149 28 0 chr4 27312407 27312696 -175015651 - AluSx SINE Alu 0 312 16 2047 133 3 0 chr4 27313206 27313500 -175014847 - AluSx SINE Alu -13 299 5 242 188 21 94 chr4 27313500 27313596 -175014751 + LTR33A LTR ERVL 434 522 -1 324 305 38 9 chr4 27313613 27313718 -175014629 - L2 LINE L2 0 3313 3206 7328 159 74 32 chr4 27313748 27313809 -175014538 - Charlie5 DNA MER1_type 0 2624 2567 2371 88 3 0 chr4 27313809 27314104 -175014243 + AluSx SINE Alu 1 296 -16 7328 159 74 32 chr4 27314104 27314834 -175013513 - Charlie5 DNA MER1_type -57 2567 1869 1895 173 0 3 chr4 27314834 27315146 -175013201 - AluJb SINE Alu -1 311 1 7328 159 74 32 chr4 27315146 27315991 -175012356 - Charlie5 DNA MER1_type -755 1869 918 1357 101 5 29 chr4 27316185 27316392 -175011955 + AluSg/x SINE Alu 73 274 -36 330 26 0 0 chr4 27316393 27316432 -175011915 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 578 313 13 22 chr4 27317031 27317255 -175011092 - MIR SINE MIR -40 222 1 837 130 0 0 chr4 27317256 27317379 -175010968 - AluJ SINE Alu -7 305 183 884 133 39 0 chr4 27317389 27317517 -175010830 - AluJ SINE Alu -169 133 1 1858 142 0 28 chr4 27317530 27317839 -175010508 - AluSx SINE Alu 0 301 1 409 282 53 18 chr4 27317975 27318145 -175010202 + MIR SINE MIR 33 208 -54 1754 167 103 42 chr4 27318255 27318662 -175009685 - MLT1C LTR MaLR 0 467 36 1300 158 5 5 chr4 27318663 27318872 -175009475 - AluJb SINE Alu -9 303 95 352 103 17 35 chr4 27318974 27319032 -175009315 - LTR6A LTR ERV1 -505 59 3 572 196 51 38 chr4 27319115 27319273 -175009074 + MER106B DNA MER1_type 897 1056 -3 1490 134 0 13 chr4 27319435 27319458 -175008889 - AluSg/x SINE Alu 0 312 290 1488 28 0 0 chr4 27319458 27319635 -175008712 + (TCTCC)n Simple_repeat Simple_repeat 2 178 0 198 0 0 0 chr4 27319642 27319664 -175008683 + (TTTTC)n Simple_repeat Simple_repeat 4 25 0 1490 134 0 13 chr4 27319664 27319863 -175008484 - AluSg/x SINE Alu -28 284 85 192 40 0 0 chr4 27319982 27320007 -175008340 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 563 128 22 172 chr4 27320018 27320198 -175008149 - L2 LINE L2 -50 3263 3111 1567 156 28 38 chr4 27320219 27320539 -175007808 + L1MC2 LINE L1 6025 6341 -3 282 29 0 0 chr4 27320560 27320595 -175007752 + (A)n Simple_repeat Simple_repeat 1 35 0 223 284 21 84 chr4 27321328 27321423 -175006924 - L2 LINE L2 -56 3216 3128 1382 231 46 9 chr4 27321486 27321664 -175006683 + MLT1A2 LTR MaLR 1 171 -203 243 0 0 0 chr4 27321664 27321691 -175006656 + (TC)n Simple_repeat Simple_repeat 2 28 0 1382 231 46 9 chr4 27321691 27321862 -175006485 + MLT1A2 LTR MaLR 171 363 -11 330 340 51 7 chr4 27322304 27322451 -175005896 + MIR SINE MIR 23 179 -29 803 226 12 0 chr4 27322452 27322616 -175005731 + L1ME LINE L1 5504 5669 -493 2243 89 7 0 chr4 27322617 27323035 -175005312 + AluSp SINE Alu 1 420 0 6009 113 13 11 chr4 27323042 27324226 -175004121 + L1MA3 LINE L1 4859 6139 -166 756 104 0 0 chr4 27324229 27324325 -175004022 + AluJ/FLAM SINE Alu 5 100 -212 2034 71 8 11 chr4 27324434 27324702 -175003645 - AluSp SINE Alu -46 267 1 992 104 7 0 chr4 27324702 27324837 -175003510 - AluSq/x SINE Alu -177 136 1 394 241 0 0 chr4 27324901 27324988 -175003359 + L2 LINE L2 3187 3273 -40 216 300 88 0 chr4 27325082 27325162 -175003185 + L2 LINE L2 3134 3220 -52 446 254 0 18 chr4 27325182 27325292 -175003055 - L2 LINE L2 -4 3309 3202 242 317 78 42 chr4 27325298 27325440 -175002907 - L2 LINE L2 -9 3304 3158 1827 158 63 20 chr4 27325531 27325878 -175002469 + MLT1A1 LTR MaLR 1 362 -3 335 313 133 24 chr4 27325880 27326046 -175002301 + MIR SINE MIR 17 200 -62 2004 127 3 10 chr4 27327075 27327367 -175000980 - AluSx SINE Alu -22 290 1 1269 107 95 196 chr4 27327375 27327711 -175000636 - AluJo SINE Alu 0 302 1 264 282 20 40 chr4 27327838 27327987 -175000360 + L1ME4a LINE L1 5976 6121 0 378 101 27 0 chr4 27328389 27328464 -174999883 + L1P5 LINE L1 5409 5488 -666 2039 87 80 0 chr4 27328466 27328742 -174999605 + AluSg SINE Alu 1 298 -12 310 223 133 85 chr4 27328770 27328981 -174999366 - AluSq SINE Alu 0 303 83 1587 114 188 8 chr4 27329543 27329798 -174998549 - AluSx SINE Alu -11 301 1 207 0 0 0 chr4 27329826 27329849 -174998498 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1358 133 127 112 chr4 27329878 27330133 -174998214 + Charlie5 DNA MER1_type 426 691 -1933 2010 103 21 3 chr4 27330133 27330423 -174997924 + AluSp SINE Alu 1 295 -18 1358 133 127 112 chr4 27330423 27330594 -174997753 + Charlie5 DNA MER1_type 691 858 -1766 1143 229 7 58 chr4 27330659 27330969 -174997378 - AluJb SINE Alu -8 294 1 251 154 46 31 chr4 27331008 27331073 -174997274 + Charlie5 DNA MER1_type 855 920 -1692 2237 91 11 0 chr4 27331262 27331548 -174996799 + AluSq SINE Alu 5 293 -20 400 323 41 25 chr4 27331564 27331883 -174996464 - L1ME4a LINE L1 -103 6018 5695 13737 149 39 28 chr4 27333167 27334136 -174994211 - Tigger1 DNA MER2_type -1 2417 1461 1564 146 109 4 chr4 27334136 27334403 -174993944 + AluJb SINE Alu 1 295 -17 13737 149 39 28 chr4 27334403 27335508 -174992839 - Tigger1 DNA MER2_type -957 1461 370 2031 105 61 0 chr4 27335508 27335803 -174992544 - AluSp SINE Alu 0 313 1 1963 150 10 3 chr4 27335806 27336100 -174992247 - AluSx SINE Alu -16 296 1 13737 149 39 28 chr4 27336100 27336409 -174991938 - Tigger1 DNA MER2_type -2049 369 1 25 51 0 0 chr4 27336562 27336601 -174991746 + AT_rich Low_complexity Low_complexity 1 39 0 1540 159 72 14 chr4 27337445 27337721 -174990626 + AluJo SINE Alu 1 292 -20 2183 104 13 19 chr4 27338580 27338750 -174989597 - AluSx SINE Alu -7 305 136 2429 71 0 0 chr4 27338750 27339047 -174989300 - AluSc SINE Alu -12 297 1 2183 104 13 19 chr4 27339047 27339183 -174989164 - AluSx SINE Alu -176 136 1 573 263 125 18 chr4 27340904 27341128 -174987219 - MIR SINE MIR 0 262 15 741 259 140 35 chr4 27342403 27342710 -174985637 - MLT1H LTR MaLR -182 367 1 2239 121 0 0 chr4 27342970 27343276 -174985071 + AluSx SINE Alu 1 306 -6 350 111 95 0 chr4 27344077 27344140 -174984207 - L1MA4A LINE L1 -6 6297 6229 273 314 113 24 chr4 27344869 27344993 -174983354 - MIR3 SINE MIR -66 142 8 2207 102 26 7 chr4 27345035 27345338 -174983009 - AluSx SINE Alu -1 311 3 476 326 117 61 chr4 27345569 27345946 -174982401 + L2 LINE L2 2866 3263 -9 342 253 50 91 chr4 27346594 27346815 -174981532 - HAL1 LINE L1 -4 2503 2292 1005 286 87 43 chr4 27346990 27347527 -174980820 - HAL1 LINE L1 -668 1839 1264 788 188 0 0 chr4 27347527 27347655 -174980692 - FLAM_A SINE Alu -5 128 1 1005 286 87 43 chr4 27347655 27347796 -174980551 - HAL1 LINE L1 -1243 1264 1131 1230 261 148 31 chr4 27347855 27348569 -174979778 - L2 LINE L2 -174 3139 2335 1292 233 120 69 chr4 27348584 27349224 -174979123 - L1MC4 LINE L1 -4 8038 7366 2941 245 196 12 chr4 27349233 27350587 -174977760 - L2 LINE L2 -961 2353 750 325 310 55 21 chr4 27350590 27350735 -174977612 - HAL1 LINE L1 -1394 1113 964 188 200 80 0 chr4 27351581 27351631 -174976716 - MIR SINE MIR -98 164 111 295 305 57 0 chr4 27352699 27352804 -174975543 - L1MC5 LINE L1 -46 7915 7805 682 190 35 0 chr4 27352834 27352976 -174975371 - L1MA4 LINE L1 -5 6295 6149 211 267 44 56 chr4 27353091 27353181 -174975166 - L2 LINE L2 -36 3277 3189 658 235 117 0 chr4 27353208 27353374 -174974973 - MER3 DNA MER1_type 0 209 25 201 244 37 73 chr4 27354263 27354345 -174974002 + MIR SINE MIR 17 95 -113 245 213 250 19 chr4 27354345 27354453 -174973894 + L2 LINE L2 3179 3311 -2 355 169 0 0 chr4 27356968 27357027 -174971320 - Charlie1a DNA MER1_type 0 1455 1397 1298 131 0 0 chr4 27357027 27357210 -174971137 + AluSg/x SINE Alu 118 300 -12 2886 166 70 56 chr4 27357210 27357339 -174971008 - Charlie1a DNA MER1_type -1356 1405 1279 750 204 80 0 chr4 27357339 27357501 -174970846 + FAM SINE Alu 1 175 0 2886 166 70 56 chr4 27357501 27358118 -174970229 - Charlie1a DNA MER1_type -1482 1279 649 1340 157 142 11 chr4 27358128 27358389 -174969958 - AluJb SINE Alu -17 295 1 1493 225 129 10 chr4 27358404 27358790 -174969557 - Charlie1a DNA MER1_type -1023 432 1 427 196 214 12 chr4 27360014 27360182 -174968165 - MIR SINE MIR -5 257 56 2077 94 101 3 chr4 27360223 27360551 -174967796 + MER46B DNA MER2_type 1 235 -1 243 0 0 0 chr4 27360590 27360617 -174967730 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 800 294 17 4 chr4 27361125 27361356 -174966991 + MIR SINE MIR 2 235 -27 2699 219 68 55 chr4 27361402 27362092 -174966255 - MER21B LTR ERV1 -62 801 98 1783 140 49 0 chr4 27362092 27362357 -174965990 + AluSx SINE Alu 25 302 -10 2699 219 68 55 chr4 27362357 27362435 -174965912 - MER21B LTR ERV1 -765 98 23 329 310 69 25 chr4 27362541 27362744 -174965603 + MIR SINE MIR 8 219 -43 192 77 0 0 chr4 27363197 27363223 -174965124 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 373 192 26 0 chr4 27363413 27363491 -174964856 + MER116 DNA Mariner 1 80 0 198 0 0 0 chr4 27363517 27363539 -174964808 + (TG)n Simple_repeat Simple_repeat 2 23 0 23 33 0 0 chr4 27363879 27363909 -174964438 + AT_rich Low_complexity Low_complexity 1 30 0 1955 154 13 0 chr4 27366708 27367007 -174961340 - AluJo SINE Alu -9 303 1 1969 149 3 13 chr4 27368191 27368493 -174959854 + AluSx SINE Alu 1 299 -13 466 68 41 0 chr4 27369902 27369975 -174958372 - L1MA3 LINE L1 0 6305 6230 303 304 92 4 chr4 27371066 27371212 -174957135 + MER5A DNA MER1_type 22 188 -1 1544 150 82 0 chr4 27372054 27372321 -174956026 + AluJb SINE Alu 1 289 -23 357 82 0 0 chr4 27372322 27372337 -174956010 + (TG)n Simple_repeat Simple_repeat 1 64 0 357 82 0 0 chr4 27372337 27372386 -174955961 + (TG)n Simple_repeat Simple_repeat 2 50 0 888 310 93 2 chr4 27372594 27373078 -174955269 - L2 LINE L2 -1326 1988 1461 289 311 141 28 chr4 27373112 27373475 -174954872 - L2 LINE L2 -2304 1010 607 231 61 0 0 chr4 27373782 27373815 -174954532 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 1430 181 47 29 chr4 27373816 27374092 -174954255 - AluJo SINE Alu -31 281 1 347 266 101 41 chr4 27374830 27374999 -174953348 - MIR SINE MIR -52 210 32 622 304 36 24 chr4 27375003 27375250 -174953097 - MIR SINE MIR 0 262 13 1402 136 15 0 chr4 27375596 27375802 -174952545 - AluSg/x SINE Alu -19 293 85 297 0 0 0 chr4 27375911 27375944 -174952403 + (TG)n Simple_repeat Simple_repeat 2 34 0 1237 151 184 25 chr4 27375961 27376200 -174952147 - AluJo SINE Alu -35 277 1 472 279 14 43 chr4 27377177 27377385 -174950962 - MIR SINE MIR -5 257 56 245 217 34 16 chr4 27378053 27378125 -174950222 + MER45A DNA AcHobo 2 64 -114 2056 105 26 61 chr4 27378141 27378485 -174949862 - THE1B LTR MaLR -32 332 1 1633 163 30 13 chr4 27378511 27378811 -174949536 - MER89 LTR ERV1 -2 557 253 335 183 21 11 chr4 27378811 27379052 -174949295 + AluJo SINE Alu 1 299 -3 2374 97 0 0 chr4 27379064 27379373 -174948974 - AluSq SINE Alu -3 310 2 817 252 91 9 chr4 27379373 27379603 -174948744 - MER89 LTR ERV1 -304 255 7 449 165 153 0 chr4 27379618 27379703 -174948644 + MER45A DNA AcHobo 81 178 0 350 293 83 13 chr4 27380527 27380684 -174947663 + MIR SINE MIR 31 198 -64 432 290 6 19 chr4 27380890 27381052 -174947295 + MARNA DNA Mariner 340 499 -87 273 233 0 14 chr4 27381425 27381498 -174946849 + MER63 DNA MER1_type 953 1024 -36 2074 127 10 3 chr4 27381502 27381801 -174946546 + AluSq SINE Alu 1 301 -12 1099 243 131 44 chr4 27381841 27382413 -174945934 - HAL1 LINE L1 -1174 1333 712 580 256 154 43 chr4 27382414 27382648 -174945699 - MLT1H LTR MaLR -2 547 288 319 252 45 54 chr4 27382648 27382759 -174945588 - HAL1 LINE L1 -2397 110 1 547 290 86 15 chr4 27382795 27382931 -174945416 - L2 LINE L2 -345 2927 2802 2187 129 3 0 chr4 27382931 27383240 -174945107 - AluSx SINE Alu -2 310 1 547 290 86 15 chr4 27383240 27383440 -174944907 - L2 LINE L2 -470 2802 2572 304 229 24 0 chr4 27384248 27384331 -174944016 - MIR SINE MIR -108 154 70 2102 133 0 0 chr4 27384702 27384996 -174943351 + AluSx SINE Alu 1 294 -18 214 271 72 72 chr4 27385067 27385274 -174943073 + MIR SINE MIR 35 241 -21 708 259 34 43 chr4 27385310 27385520 -174942827 + MIR SINE MIR 23 228 -34 379 221 106 0 chr4 27385836 27385940 -174942407 - L1ME4a LINE L1 -1 6120 6006 2321 105 0 6 chr4 27386058 27386371 -174941976 + AluSx SINE Alu 1 311 -1 2437 174 102 15 chr4 27386566 27386866 -174941481 - L1PA16 LINE L1 -16 6150 5878 2630 59 0 0 chr4 27386866 27387171 -174941176 - AluY SINE Alu -6 305 1 2437 174 102 15 chr4 27387171 27387207 -174941140 - L1PA16 LINE L1 -288 5878 5847 366 23 0 0 chr4 27387207 27387250 -174941097 + (TG)n Simple_repeat Simple_repeat 2 44 0 2437 174 102 15 chr4 27387250 27387441 -174940906 - L1PA16 LINE L1 -319 5847 5576 2719 221 90 20 chr4 27387935 27388725 -174939622 - L1ME3A LINE L1 -1 6169 5325 333 308 126 13 chr4 27389280 27389439 -174938908 + MIR SINE MIR 32 208 -54 1991 130 47 13 chr4 27390669 27390970 -174937377 + AluSx SINE Alu 1 311 -1 411 334 146 13 chr4 27391100 27391408 -174936939 - L2 LINE L2 -1 3271 2923 583 262 108 68 chr4 27391551 27392014 -174936333 - L2 LINE L2 0 3313 2740 1790 141 31 21 chr4 27392014 27392304 -174936043 - AluJo SINE Alu -19 293 1 583 262 108 68 chr4 27392304 27392518 -174935829 - L2 LINE L2 -573 2740 2536 605 193 18 48 chr4 27392533 27392699 -174935648 + MER5A DNA MER1_type 1 161 -28 2410 95 0 0 chr4 27392950 27393255 -174935092 + AluSx SINE Alu 1 305 -7 309 344 46 0 chr4 27393255 27393406 -174934941 - MIR SINE MIR -5 257 100 371 168 40 30 chr4 27393417 27393518 -174934829 + L1MB3 LINE L1 6082 6183 0 2436 85 13 0 chr4 27394070 27394375 -174933972 - AluSx SINE Alu -3 309 1 23 33 0 0 chr4 27394381 27394411 -174933936 + AT_rich Low_complexity Low_complexity 1 30 0 605 274 58 61 chr4 27394826 27395136 -174933211 + MER46C DNA MER2_type 30 338 0 190 278 111 19 chr4 27395173 27395281 -174933066 + MIR SINE MIR 23 140 -68 368 269 62 66 chr4 27395420 27395677 -174932670 + L2 LINE L2 3015 3270 -43 26 50 0 0 chr4 27397001 27397041 -174931306 + AT_rich Low_complexity Low_complexity 1 40 0 2133 96 7 36 chr4 27397084 27397387 -174930960 - AluSq SINE Alu -19 294 1 667 306 53 42 chr4 27397395 27397827 -174930520 - L1ME3A LINE L1 -285 5885 5449 283 264 207 11 chr4 27397884 27398098 -174930249 - MIR SINE MIR -7 255 2 194 350 48 10 chr4 27398098 27398201 -174930146 - MIR3 SINE MIR -51 157 51 254 264 189 0 chr4 27398390 27398496 -174929851 - MIR SINE MIR -31 231 106 3039 138 40 108 chr4 27398717 27398916 -174929431 - L1MC3 LINE L1 -6 7779 7568 1882 151 30 7 chr4 27398916 27399221 -174929126 - AluSx SINE Alu 0 312 1 3039 138 40 108 chr4 27399221 27399718 -174928629 - L1MC3 LINE L1 -217 7568 7130 1904 153 14 14 chr4 27399718 27400013 -174928334 + AluJb SINE Alu 1 295 -17 328 290 36 22 chr4 27400215 27400357 -174927990 - MIR SINE MIR -60 148 18 210 290 101 36 chr4 27400718 27400856 -174927491 - MER5A DNA MER1_type -6 183 37 583 198 9 0 chr4 27400875 27400981 -174927366 + AluJb SINE Alu 193 299 -13 437 250 14 0 chr4 27401026 27401170 -174927177 + GA-rich Low_complexity Low_complexity 3 148 0 906 152 0 0 chr4 27401174 27401492 -174926855 + FLAM_C SINE Alu 1 318 0 3592 138 69 12 chr4 27401503 27402172 -174926175 + L1MB3 LINE L1 5477 6183 0 636 173 12 93 chr4 27402184 27402293 -174926054 - MIR SINE MIR -74 188 72 2132 94 22 0 chr4 27402293 27402570 -174925777 + AluSq SINE Alu 1 283 -30 207 0 0 0 chr4 27402573 27402596 -174925751 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 636 173 12 93 chr4 27402596 27402644 -174925703 - MIR SINE MIR -192 70 40 367 259 78 92 chr4 27402646 27402798 -174925549 + L2 LINE L2 2971 3124 -189 213 39 0 0 chr4 27402798 27402824 -174925523 + (TTA)n Simple_repeat Simple_repeat 2 27 0 367 259 78 92 chr4 27402824 27403018 -174925329 + L2 LINE L2 3124 3312 -1 575 275 64 49 chr4 27403019 27403364 -174924983 - L2 LINE L2 -14 3258 2909 363 68 0 0 chr4 27403420 27403464 -174924883 + MER57B LTR ERV1 324 367 -67 25 0 0 0 chr4 27403464 27403489 -174924858 + AT_rich Low_complexity Low_complexity 1 25 0 342 308 58 47 chr4 27403760 27403932 -174924415 - MIR SINE MIR -62 200 27 1768 193 82 37 chr4 27404852 27405231 -174923116 - MSTD LTR MaLR 0 396 1 258 333 138 24 chr4 27405464 27405755 -174922592 + L2 LINE L2 334 657 -2657 993 243 194 19 chr4 27405839 27406371 -174921976 + L2 LINE L2 1320 1944 -1370 721 217 60 18 chr4 27407140 27407306 -174921041 - AluJo SINE Alu -20 292 120 1019 85 8 0 chr4 27407380 27407510 -174920837 - AluSg SINE Alu -179 131 1 214 320 13 0 chr4 27407515 27407593 -174920754 + L2 LINE L2 3234 3312 -1 1102 124 56 6 chr4 27408207 27408385 -174919962 - L1PB4 LINE L1 -2 6154 5968 1086 190 5 9 chr4 27408385 27408596 -174919751 - AluSq SINE Alu -20 293 84 3021 125 55 50 chr4 27408596 27409089 -174919258 - L1PB4 LINE L1 -168 5988 5490 1849 105 98 25 chr4 27409089 27409374 -174918973 - AluSq SINE Alu -7 306 1 3021 125 55 50 chr4 27409374 27409442 -174918905 - L1PB4 LINE L1 -666 5490 5424 252 282 20 40 chr4 27409853 27410002 -174918345 - L1ME4a LINE L1 0 6121 5976 1152 107 95 196 chr4 27410129 27410465 -174917882 + AluJo SINE Alu 1 302 0 2067 126 0 10 chr4 27410473 27410766 -174917581 + AluSx SINE Alu 1 290 -22 297 317 126 24 chr4 27411794 27411961 -174916386 - MIR SINE MIR -62 200 17 1756 164 58 17 chr4 27411963 27412311 -174916036 - MLT1A1 LTR MaLR -3 362 1 210 317 78 42 chr4 27412402 27412544 -174915803 + L2 LINE L2 3158 3304 -9 411 254 0 18 chr4 27412550 27412660 -174915687 + L2 LINE L2 3202 3309 -4 189 300 88 0 chr4 27412680 27412760 -174915587 - L2 LINE L2 -52 3220 3134 366 241 0 0 chr4 27412854 27412941 -174915406 - L2 LINE L2 -40 3273 3187 1996 105 22 38 chr4 27413005 27413140 -174915207 + AluSx SINE Alu 1 137 -175 2520 77 0 0 chr4 27413140 27413450 -174914897 + AluSp SINE Alu 1 310 -3 1996 105 22 38 chr4 27413450 27413628 -174914719 + AluSx SINE Alu 137 309 -3 1413 178 34 60 chr4 27414070 27414368 -174913979 + AluJb SINE Alu 5 294 -18 401 248 208 58 chr4 27414716 27414990 -174913357 - L2 LINE L2 -21 3292 2978 475 251 145 67 chr4 27415177 27415590 -174912757 - L2 LINE L2 -321 2992 2550 2056 143 7 79 chr4 27415850 27416268 -174912079 - MLT1B LTR MaLR 0 390 3 1960 129 23 13 chr4 27416287 27416590 -174911757 + AluSx SINE Alu 7 312 0 411 303 45 7 chr4 27417239 27417394 -174910953 - MIR SINE MIR -57 205 45 12186 112 166 84 chr4 27417793 27418138 -174910209 - Tigger4(Zombi) DNA MER2_type -1 2730 2415 2301 102 3 3 chr4 27418138 27418451 -174909896 - AluSq SINE Alu 0 313 1 12186 112 166 84 chr4 27418451 27418682 -174909665 - Tigger4(Zombi) DNA MER2_type -316 2415 2204 207 0 0 0 chr4 27418682 27418705 -174909642 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 12186 112 166 84 chr4 27418705 27418777 -174909570 - Tigger4(Zombi) DNA MER2_type -527 2204 2139 2012 138 0 0 chr4 27418777 27419067 -174909280 - AluSg SINE Alu 0 310 21 12186 112 166 84 chr4 27419067 27419311 -174909036 - Tigger4(Zombi) DNA MER2_type -592 2139 1916 919 152 7 0 chr4 27419311 27419449 -174908898 + AluJo SINE Alu 1 139 -173 12186 112 166 84 chr4 27419449 27419466 -174908881 - Tigger4(Zombi) DNA MER2_type -815 1916 1902 1467 106 0 10 chr4 27419466 27419665 -174908682 - AluSq SINE Alu -116 197 1 12186 112 166 84 chr4 27419665 27420255 -174908092 - Tigger4(Zombi) DNA MER2_type -829 1902 1362 2517 71 0 0 chr4 27420255 27420552 -174907795 - AluSc SINE Alu -12 297 1 12186 112 166 84 chr4 27420552 27421423 -174906924 - Tigger4(Zombi) DNA MER2_type -1369 1362 11 2159 103 0 0 chr4 27422211 27422483 -174905864 + AluSx SINE Alu 36 307 -5 226 0 0 56 chr4 27422537 27422573 -174905774 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 318 105 0 53 chr4 27422577 27422634 -174905713 - AluSp/q SINE Alu -17 286 233 1935 122 0 7 chr4 27422821 27423091 -174905256 - AluSx SINE Alu -44 268 1 587 199 20 0 chr4 27423119 27423265 -174905082 + GA-rich Low_complexity Low_complexity 3 151 0 1985 108 0 8 chr4 27423752 27424020 -174904327 - AluSq SINE Alu -33 280 15 517 140 320 0 chr4 27424248 27424348 -174903999 + FLAM_C SINE Alu 1 132 -1 1859 116 19 0 chr4 27424854 27425112 -174903235 + AluSq SINE Alu 50 312 -1 1935 140 23 7 chr4 27425465 27425765 -174902582 - AluSq SINE Alu -8 305 1 795 155 0 23 chr4 27425797 27425926 -174902421 + FLAM_C SINE Alu 1 126 -7 200 214 0 24 chr4 27426678 27426720 -174901627 + (TAAG)n Simple_repeat Simple_repeat 2 42 0 2292 107 0 7 chr4 27426737 27427047 -174901300 + AluSq SINE Alu 1 308 -5 1639 264 75 19 chr4 27427049 27427618 -174900729 + L1MC1 LINE L1 5352 5956 -1852 2112 144 0 0 chr4 27427618 27427917 -174900430 + AluSq SINE Alu 2 300 -13 1639 264 75 19 chr4 27427917 27427933 -174900414 + L1MC1 LINE L1 5956 5970 -1838 243 61 0 0 chr4 27427948 27427981 -174900366 + (CA)n Simple_repeat Simple_repeat 2 34 0 4989 153 3 16 chr4 27427981 27428961 -174899386 + L1PA15 LINE L1 4502 5476 -689 1390 136 5 0 chr4 27428967 27429173 -174899174 - AluSg/x SINE Alu -20 290 84 3643 97 12 15 chr4 27429173 27429691 -174898656 + L1PA15 LINE L1 5461 5976 -189 1928 94 14 11 chr4 27429806 27430093 -174898254 + L1PA15 LINE L1 5875 6162 -3 252 261 0 0 chr4 27430164 27430233 -174898114 + (TA)n Simple_repeat Simple_repeat 1 69 0 1222 213 141 32 chr4 27430389 27430793 -174897554 - MLT1C LTR MaLR -19 448 1 1066 224 42 102 chr4 27431260 27431681 -174896666 - MLT1A2 LTR MaLR 0 374 1 732 237 60 5 chr4 27431961 27432176 -174896171 + MIR SINE MIR 36 262 0 2383 90 7 0 chr4 27432441 27432740 -174895607 + AluSp SINE Alu 3 303 -10 790 142 8 15 chr4 27432741 27432875 -174895472 + L1MC1 LINE L1 6192 6324 -9 1646 157 10 51 chr4 27432876 27432960 -174895387 + AluJo SINE Alu 1 87 -225 2593 62 0 0 chr4 27432960 27433264 -174895083 + AluY SINE Alu 1 304 -7 1646 157 10 51 chr4 27433264 27433473 -174894874 + AluJo SINE Alu 87 282 -30 204 40 0 0 chr4 27433476 27433501 -174894846 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 1294 105 6 0 chr4 27433952 27434124 -174894223 - AluSg/x SINE Alu -20 290 118 335 304 0 0 chr4 27434146 27434248 -174894099 + MIR SINE MIR 148 249 -13 23 33 0 0 chr4 27434954 27434984 -174893363 + AT_rich Low_complexity Low_complexity 1 30 0 2822 116 16 12 chr4 27435078 27435510 -174892837 + MER57B LTR ERV1 1 434 0 528 244 140 64 chr4 27435525 27435619 -174892728 - MARNA DNA Mariner -162 424 339 2214 97 31 0 chr4 27435619 27435909 -174892438 - AluSq SINE Alu -14 299 1 528 244 140 64 chr4 27435909 27436064 -174892283 - MARNA DNA Mariner -247 339 156 324 340 19 0 chr4 27436122 27436225 -174892122 - MER81 DNA DNA -3 111 7 260 225 98 46 chr4 27436579 27436725 -174891622 + MIR SINE MIR 54 205 -57 4340 111 18 66 chr4 27436904 27437627 -174890720 + LTR8 LTR ERV1 4 691 0 230 296 24 72 chr4 27437633 27437758 -174890589 - L2 LINE L2 -186 3086 2968 2469 82 0 0 chr4 27437876 27438180 -174890167 + AluY SINE Alu 1 304 -7 186 250 33 92 chr4 27438210 27438362 -174889985 - L2 LINE L2 -618 2696 2554 207 243 22 140 chr4 27438393 27438529 -174889818 + L2 LINE L2 3024 3143 -170 495 234 42 42 chr4 27438689 27438856 -174889491 + L2 LINE L2 3147 3313 0 1142 138 0 95 chr4 27440083 27440169 -174888178 + L1PA15 LINE L1 5954 6047 -118 2133 125 10 13 chr4 27440169 27440482 -174887865 + AluSx SINE Alu 1 312 0 1142 138 0 95 chr4 27440482 27440499 -174887848 + L1PA15 LINE L1 6047 6064 -101 2126 131 0 19 chr4 27440499 27440811 -174887536 + AluSx SINE Alu 1 306 -6 1142 138 0 95 chr4 27440811 27440938 -174887409 + L1PA15 LINE L1 6064 6163 -2 28 0 0 0 chr4 27440939 27440967 -174887380 + AT_rich Low_complexity Low_complexity 1 28 0 1076 104 94 30 chr4 27440976 27441177 -174887170 + L1PA16 LINE L1 5952 6165 -1 192 97 0 0 chr4 27441219 27441250 -174887097 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 341 271 126 0 chr4 27441559 27441710 -174886637 - L1MEd LINE L1 -4969 1150 981 405 333 80 30 chr4 27441897 27442287 -174886060 - L1MEd LINE L1 -5626 493 81 2051 110 23 36 chr4 27442287 27442595 -174885752 + AluSx SINE Alu 1 304 -8 2810 195 33 20 chr4 27442727 27442892 -174885455 + L1M4 LINE L1 3622 3783 -2363 2169 125 3 10 chr4 27442892 27443204 -174885143 + AluSx SINE Alu 1 310 -2 2810 195 33 20 chr4 27443204 27443637 -174884710 + L1M4 LINE L1 3783 4228 -1918 862 199 44 44 chr4 27443653 27443859 -174884488 + L1MB8 LINE L1 5964 6169 -9 2108 122 0 0 chr4 27443912 27444198 -174884149 - AluSx SINE Alu -26 286 1 250 227 17 118 chr4 27444383 27444571 -174883776 + L1P LINE L1 3584 3753 -2393 1786 161 6 50 chr4 27444571 27445065 -174883282 + AluSx SINE Alu 1 480 0 261 283 9 0 chr4 27445090 27445196 -174883151 + L1M4 LINE L1 3867 3973 -2173 1810 156 16 25 chr4 27445217 27445532 -174882815 + AluJo SINE Alu 1 312 0 2842 10 0 0 chr4 27445581 27445883 -174882464 + AluYa5 SINE Alu 1 302 -9 2054 134 0 10 chr4 27446112 27446404 -174881943 - AluSq SINE Alu -24 289 1 222 362 53 13 chr4 27446404 27446556 -174881791 - MIR SINE MIR -70 192 35 1550 190 6 55 chr4 27447053 27447379 -174880968 - AluJb SINE Alu -2 310 1 401 259 65 35 chr4 27447696 27447866 -174880481 + Charlie7 DNA MER1_type 46 220 -2392 448 256 134 0 chr4 27448855 27449019 -174879328 + MIR SINE MIR 44 229 -33 270 106 0 0 chr4 27449023 27449070 -174879277 + (TG)n Simple_repeat Simple_repeat 2 48 0 242 180 82 0 chr4 27449078 27449139 -174879208 + Charlie7 DNA MER1_type 1452 1517 -1095 431 220 65 24 chr4 27449149 27449317 -174879030 - MER113 DNA MER1_type? -337 184 10 2100 113 20 3 chr4 27449416 27449708 -174878639 - AluSc SINE Alu -12 297 1 672 261 105 8 chr4 27449898 27450136 -174878211 + MIR SINE MIR 1 261 -1 23 33 0 0 chr4 27450165 27450195 -174878152 + AT_rich Low_complexity Low_complexity 1 30 0 1908 107 0 19 chr4 27450209 27450508 -174877839 + AluSx SINE Alu 25 318 0 258 262 60 12 chr4 27450522 27450606 -174877741 - Charlie7 DNA MER1_type -2524 88 1 190 304 0 0 chr4 27451339 27451385 -174876962 - L3 LINE CR1 -5 1572 1527 2082 116 31 0 chr4 27451520 27451813 -174876534 + AluSx SINE Alu 1 302 -10 313 301 84 30 chr4 27451881 27452047 -174876300 + MIR3 SINE MIR 10 184 -24 695 316 30 23 chr4 27452092 27452358 -174875989 - L3 LINE CR1 -97 1480 1213 821 220 75 9 chr4 27452608 27452822 -174875525 - MIR SINE MIR -10 252 25 628 159 145 14 chr4 27452825 27452963 -174875384 + AluJb SINE Alu 137 292 -20 1959 132 28 0 chr4 27452963 27453251 -174875096 + AluJb SINE Alu 1 296 -16 2274 116 0 0 chr4 27453428 27453731 -174874616 - AluSx SINE Alu -9 303 1 1374 236 36 21 chr4 27453736 27454122 -174874225 - L1ME2 LINE L1 0 6164 5773 267 324 37 29 chr4 27454192 27454328 -174874019 - L2 LINE L2 0 3272 3136 1006 144 176 0 chr4 27454438 27454625 -174873722 - AluJo SINE Alu -12 300 81 373 233 133 0 chr4 27454757 27454845 -174873502 - MIR SINE MIR -116 146 47 388 295 132 11 chr4 27454845 27455035 -174873312 + MIR SINE MIR 2 214 -48 2456 91 0 0 chr4 27456888 27457186 -174871161 + AluSx SINE Alu 1 298 -14 390 297 176 43 chr4 27457203 27457459 -174870888 - L2 LINE L2 0 3272 2983 241 100 0 0 chr4 27457836 27457876 -174870471 - Alu SINE Alu -3 297 258 222 194 0 90 chr4 27459246 27459313 -174869034 - MIR SINE MIR -130 132 72 1892 129 44 27 chr4 27459472 27459766 -174868581 + AluJo SINE Alu 6 304 -8 548 60 0 0 chr4 27460065 27460132 -174868215 - Charlie3 DNA MER1_type 0 2712 2646 234 227 0 53 chr4 27461227 27461302 -174867045 + CT-rich Low_complexity Low_complexity 1 71 0 612 269 41 29 chr4 27461616 27461858 -174866489 + MER112 DNA MER1_type 8 252 -8 430 368 89 10 chr4 27462279 27462682 -174865665 + L2 LINE L2 2725 3187 -85 1602 191 11 14 chr4 27463024 27463307 -174865040 - AluJo SINE Alu -10 302 21 266 290 14 0 chr4 27463912 27463981 -174864366 - MIR SINE MIR -57 151 82 300 387 0 7 chr4 27464217 27464359 -174863988 + L3 LINE CR1 1391 1531 -46 314 270 0 0 chr4 27464361 27464435 -174863912 + MER5A DNA MER1_type 1 74 -115 551 300 6 6 chr4 27464435 27464595 -174863752 - MER52A LTR ERV1 0 1755 1596 890 247 34 119 chr4 27464595 27465035 -174863312 - MER52A LTR ERV1 -23 478 343 2189 140 0 3 chr4 27465164 27465471 -174862876 + AluSx SINE Alu 1 306 -6 521 231 17 0 chr4 27465503 27465620 -174862727 - LTR28 LTR ERV1 -871 149 31 2016 129 21 0 chr4 27466500 27466780 -174861567 + AluSx SINE Alu 1 286 -26 180 0 0 0 chr4 27467345 27467365 -174860982 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1696 147 17 51 chr4 27467367 27467659 -174860688 - AluJo SINE Alu -30 282 1 229 326 68 23 chr4 27468189 27468321 -174860026 + MIR SINE MIR 50 187 -75 686 174 36 18 chr4 27468401 27468568 -174859779 + L1M4 LINE L1 4560 4729 -1417 2034 196 42 74 chr4 27468568 27469134 -174859213 - MLT2B3 LTR ERVL -6 548 1 702 259 99 18 chr4 27469134 27469501 -174858846 + L1M4 LINE L1 4750 5154 -992 279 293 30 36 chr4 27469822 27469964 -174858383 - MIR SINE MIR -65 143 21 476 271 113 23 chr4 27470303 27470480 -174857867 - MIR3 SINE MIR 0 208 16 502 221 0 0 chr4 27470933 27471037 -174857310 + MSTD LTR MaLR 23 126 -270 182 309 75 64 chr4 27472030 27472124 -174856223 - L3b LINE CR1 -73 1510 1416 2311 122 0 3 chr4 27472436 27472740 -174855607 + AluSx SINE Alu 1 303 -9 1959 141 0 7 chr4 27472899 27473196 -174855151 + AluSx SINE Alu 1 295 -17 197 297 141 45 chr4 27473330 27473506 -174854841 + MIR SINE MIR 21 212 -50 354 275 0 58 chr4 27473855 27473975 -174854372 - L3 LINE CR1 -666 911 799 247 374 28 8 chr4 27474032 27474260 -174854087 - L3 LINE CR1 -916 661 361 606 219 139 33 chr4 27475210 27475425 -174852922 + MIR SINE MIR 13 250 -12 261 295 189 33 chr4 27476960 27477082 -174851265 + MIR SINE MIR 48 188 -74 585 313 0 0 chr4 27477211 27477374 -174850973 - MIR SINE MIR -98 164 2 309 232 7 56 chr4 27478091 27478233 -174850114 + G-rich Low_complexity Low_complexity 5 139 0 21 0 0 0 chr4 27478268 27478289 -174850058 + GC_rich Low_complexity Low_complexity 1 21 0 191 236 18 36 chr4 27479402 27479457 -174848890 - MIR SINE MIR -12 250 197 184 227 0 0 chr4 27479449 27479493 -174848854 - L2 LINE L2 -5 3308 3265 * 229 220 0 20 chr4 27479574 27479624 -174848723 - L2 LINE L2 -8 3305 3257 1382 132 5 0 chr4 27479939 27480136 -174848211 + AluSq SINE Alu 104 301 -12 349 289 51 66 chr4 27480307 27480421 -174847926 - L1MEc LINE L1 -4688 1708 1594 2472 52 0 7 chr4 27480421 27480711 -174847636 + AluY SINE Alu 8 295 -16 349 289 51 66 chr4 27480711 27480852 -174847495 - L1MEc LINE L1 -4802 1594 1457 539 327 156 30 chr4 27482328 27483222 -174845125 - L2 LINE L2 -4 3309 2310 3014 211 70 42 chr4 27483446 27483962 -174844385 + L1ME2 LINE L1 4886 5386 -778 2185 111 7 7 chr4 27483962 27484268 -174844079 + AluSg SINE Alu 5 310 0 3014 211 70 42 chr4 27484268 27484996 -174843351 + L1ME2 LINE L1 5386 6163 -1 299 277 50 0 chr4 27485017 27485118 -174843229 + L1MEd LINE L1 905 1010 -5109 1332 69 0 6 chr4 27486396 27486570 -174841777 - MER107 DNA MER1_type 0 197 25 1032 130 34 39 chr4 27486673 27486881 -174841466 - L1MD3 LINE L1 -385 7610 7404 262 163 20 0 chr4 27486881 27486930 -174841417 - MLT1F1 LTR MaLR -442 125 76 1910 165 10 3 chr4 27487256 27487565 -174840782 - AluSx SINE Alu -1 311 1 251 271 100 57 chr4 27488198 27488338 -174840009 - MIR3 SINE MIR -59 149 4 330 327 37 0 chr4 27488359 27488466 -174839881 - MIR SINE MIR -68 140 30 1849 172 0 3 chr4 27489009 27489306 -174839041 - AluJo SINE Alu -16 296 1 234 148 56 19 chr4 27489310 27489364 -174838983 - MLT1K LTR MaLR -14 574 519 421 244 0 11 chr4 27489534 27489624 -174838723 - MER5B DNA MER1_type -89 89 1 1066 191 5 5 chr4 27490375 27490564 -174837783 - MER5A DNA MER1_type 0 189 1 223 320 98 74 chr4 27490708 27491114 -174837233 - L2 LINE L2 -4 3268 2853 893 286 102 16 chr4 27491405 27491789 -174836558 - LTR16A LTR ERVL -10 440 24 200 271 120 53 chr4 27492321 27492454 -174835893 - MIR3 SINE MIR -23 185 44 622 290 68 52 chr4 27492570 27492935 -174835412 + L2 LINE L2 2373 2743 -571 3620 136 38 31 chr4 27493050 27493735 -174834612 + L1MB8 LINE L1 5488 6177 -1 2554 93 0 0 chr4 27493742 27494055 -174834292 + AluSq SINE Alu 1 313 0 2309 90 13 16 chr4 27494678 27494988 -174833359 - AluSx SINE Alu -3 309 1 231 36 0 0 chr4 27495030 27495058 -174833289 + (CA)n Simple_repeat Simple_repeat 2 29 0 387 228 70 18 chr4 27495435 27495549 -174832798 + MIR SINE MIR 19 138 -70 22 56 0 0 chr4 27495626 27495662 -174832685 + AT_rich Low_complexity Low_complexity 1 36 0 502 303 107 8 chr4 27496987 27497248 -174831099 - L1ME3 LINE L1 -7 6155 5869 311 345 51 39 chr4 27497390 27497645 -174830702 - L2 LINE L2 0 3272 3015 2695 207 47 24 chr4 27498112 27498692 -174829655 + MLT1E LTR MaLR 1 593 0 186 289 0 0 chr4 27501085 27501130 -174827217 + MIR SINE MIR 218 262 0 205 266 16 62 chr4 27501485 27501549 -174826798 - MIR3 SINE MIR -38 170 110 481 218 36 0 chr4 27501945 27502055 -174826292 + MLT1F LTR MaLR 426 539 -3 336 250 11 23 chr4 27502196 27502284 -174826063 + L2 LINE L2 3209 3295 -18 451 311 50 0 chr4 27504113 27504293 -174824054 - MER117 DNA MER1_type 0 197 9 215 305 38 48 chr4 27504398 27504503 -174823844 - MIR SINE MIR -8 254 151 291 233 78 22 chr4 27504590 27504680 -174823667 - MIR SINE MIR -147 115 21 228 316 69 52 chr4 27504826 27505000 -174823347 + L2 LINE L2 2829 3005 -267 1100 133 6 6 chr4 27505003 27505168 -174823179 - AluJo/FRAM SINE Alu -8 304 140 385 190 51 0 chr4 27705171 27705250 -174623097 + MIR3 SINE MIR 100 182 -26 951 130 7 0 chr4 27707412 27707558 -174620789 - AluJb SINE Alu -165 147 1 502 273 42 30 chr4 27707620 27707633 -174620714 - L2 LINE L2 -15 3298 3287 722 183 8 30 chr4 27707633 27707764 -174620583 + FLAM_A SINE Alu 4 131 -2 502 273 42 30 chr4 27707764 27707915 -174620432 - L2 LINE L2 -26 3287 3132 2123 113 3 3 chr4 27707996 27708305 -174620042 + AluSc SINE Alu 1 309 0 1425 81 0 0 chr4 27708541 27708727 -174619620 - AluY SINE Alu -9 302 117 585 150 8 55 chr4 27708834 27708961 -174619386 + AluSg/x SINE Alu 189 309 0 545 144 133 61 chr4 27708972 27709122 -174619225 - Charlie5 DNA MER1_type -2378 246 79 1906 103 8 0 chr4 27709122 27709385 -174618962 + AluSg SINE Alu 34 298 -12 545 144 133 61 chr4 27709385 27709415 -174618932 - Charlie5 DNA MER1_type -2545 79 53 284 224 133 86 chr4 27709412 27709622 -174618725 - AluSq SINE Alu 0 303 84 * 1496 114 188 8 chr4 27710185 27710440 -174617907 - AluSx SINE Alu -11 301 1 276 30 0 0 chr4 27710561 27710594 -174617753 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 608 323 9 18 chr4 27711193 27711410 -174616937 - MIR SINE MIR -40 222 8 797 152 0 0 chr4 27711416 27711541 -174616806 - AluJ SINE Alu -5 307 183 827 136 48 0 chr4 27711550 27711675 -174616672 - AluJ SINE Alu -171 131 1 1847 145 0 26 chr4 27711687 27711997 -174616350 - AluSx SINE Alu -10 302 1 440 289 54 12 chr4 27712134 27712300 -174616047 + MIR SINE MIR 33 205 -57 187 261 22 0 chr4 27712355 27712401 -174615946 - L3 LINE CR1 -204 1373 1327 1171 178 15 5 chr4 27712415 27712612 -174615735 - MLT1C LTR MaLR 0 467 269 315 49 0 0 chr4 27712808 27712849 -174615498 + (TG)n Simple_repeat Simple_repeat 2 42 0 1818 122 0 34 chr4 27712849 27713144 -174615203 - AluSx SINE Alu -27 285 1 306 339 0 57 chr4 27713152 27713248 -174615099 - L3 LINE CR1 -820 757 668 2290 173 106 36 chr4 27713248 27713775 -174614572 - LTR6A LTR ERV1 0 564 1 306 339 0 57 chr4 27713775 27713802 -174614545 - L3 LINE CR1 -909 668 641 560 196 51 38 chr4 27713857 27714015 -174614332 + MER106B DNA MER1_type 897 1056 -3 636 81 0 0 chr4 27714195 27714282 -174614065 + (TCTCC)n Simple_repeat Simple_repeat 2 88 0 1475 137 0 4 chr4 27714282 27714508 -174613839 - AluSg/x SINE Alu -3 309 85 21 0 0 0 chr4 27714684 27714705 -174613642 + AT_rich Low_complexity Low_complexity 1 21 0 1241 118 0 6 chr4 27714815 27714993 -174613354 + AluSg/x SINE Alu 110 286 -24 2122 135 0 0 chr4 27715108 27715420 -174612927 + AluJb SINE Alu 1 312 0 219 246 123 0 chr4 27715468 27715525 -174612822 - MIR SINE MIR -2 260 197 216 0 0 0 chr4 27715914 27715938 -174612409 + (T)n Simple_repeat Simple_repeat 1 24 0 691 185 0 8 chr4 27715989 27716108 -174612239 + AluSq/x SINE Alu 33 150 -163 951 118 139 145 chr4 27716213 27716372 -174611975 + Charlie5 DNA MER1_type 530 688 -1936 1936 116 10 3 chr4 27716372 27716665 -174611682 + AluSp SINE Alu 1 295 -18 951 118 139 145 chr4 27716665 27716836 -174611511 + Charlie5 DNA MER1_type 688 858 -1766 1334 189 3 46 chr4 27716899 27717206 -174611141 - AluJo SINE Alu -18 294 1 323 178 0 27 chr4 27717225 27717298 -174611049 + Charlie5 DNA MER1_type 834 904 -1708 1965 131 3 7 chr4 27717482 27717788 -174610559 + AluSg SINE Alu 1 305 -5 1153 132 0 0 chr4 27718280 27718454 -174609893 + AluSg/x SINE Alu 137 310 -2 1132 95 12 12 chr4 27718563 27718732 -174609615 + AluSq SINE Alu 1 169 -144 1146 104 0 0 chr4 27718832 27719015 -174609332 + AluSq SINE Alu 130 312 0 1361 251 81 26 chr4 27719037 27719142 -174609205 + L1ME3A LINE L1 5383 5481 -689 2077 126 10 0 chr4 27719142 27719436 -174608911 + AluSx SINE Alu 1 297 -15 1361 251 81 26 chr4 27719436 27719863 -174608484 + L1ME3A LINE L1 5481 5944 -226 1069 221 108 82 chr4 27720029 27720409 -174607938 - L2 LINE L2 0 3313 2924 276 261 238 0 chr4 27720693 27720836 -174607511 + MIR SINE MIR 24 203 -59 2169 106 0 3 chr4 27720988 27721289 -174607058 - AluSx SINE Alu -12 300 1 669 191 23 118 chr4 27721441 27721477 -174606870 + MER4D LTR ERV1 684 722 -181 1737 158 6 22 chr4 27721477 27721794 -174606553 - AluJb SINE Alu 0 312 1 669 191 23 118 chr4 27721794 27721977 -174606370 + MER4D LTR ERV1 722 882 -21 2258 43 4 0 chr4 27721978 27722257 -174606090 + AluY SINE Alu 1 280 -31 207 0 0 0 chr4 27722260 27722283 -174606064 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2089 106 0 0 chr4 27722503 27722795 -174605552 + AluSx SINE Alu 1 292 -20 189 0 0 0 chr4 27722845 27722866 -174605481 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 287 273 0 61 chr4 27723329 27723461 -174604886 - L2 LINE L2 -223 3049 2926 696 212 106 20 chr4 27723736 27723789 -174604558 - L1MC4 LINE L1 -399 7643 7596 489 34 0 0 chr4 27723789 27723848 -174604499 + (TCTA)n Simple_repeat Simple_repeat 1 59 0 696 212 106 20 chr4 27723848 27723992 -174604355 - L1MC4 LINE L1 -446 7596 7429 2182 109 0 0 chr4 27724543 27724845 -174603502 + AluSx SINE Alu 1 302 -10 599 185 17 34 chr4 27724845 27724964 -174603383 - FLAM_A SINE Alu -16 117 1 620 266 18 53 chr4 27724970 27725196 -174603151 + L2 LINE L2 3095 3312 -1 2011 119 3 0 chr4 27725562 27725857 -174602490 + AluSx SINE Alu 2 297 -15 340 244 131 50 chr4 27726387 27726547 -174601800 + MIR SINE MIR 89 261 -1 2108 122 0 0 chr4 27726623 27726919 -174601428 - AluSx SINE Alu -16 296 1 21 36 0 0 chr4 27726999 27727027 -174601320 + AT_rich Low_complexity Low_complexity 1 28 0 198 77 19 39 chr4 27727121 27727173 -174601174 + (TTTTTA)n Simple_repeat Simple_repeat 3 53 0 1934 210 60 29 chr4 27727274 27727760 -174600587 - L1ME1 LINE L1 -279 5887 5387 2142 116 0 10 chr4 27727760 27728070 -174600277 - AluSx SINE Alu -5 307 1 2372 94 0 0 chr4 27728070 27728377 -174599970 - AluSc SINE Alu -1 308 1 1825 129 14 7 chr4 27728483 27728807 -174599540 - AluSx SINE Alu 0 333 8 854 150 0 0 chr4 27729298 27729425 -174598922 + FLAM_C SINE Alu 1 127 -6 2067 52 37 80 chr4 27729446 27729770 -174598577 + AluY SINE Alu 1 310 -1 535 221 111 102 chr4 27729853 27729941 -174598406 - MIR SINE MIR -33 229 143 2104 100 0 7 chr4 27729941 27730232 -174598115 - AluSg SINE Alu -21 289 1 535 221 111 102 chr4 27730232 27730369 -174597978 - MIR SINE MIR -119 143 2 571 133 22 172 chr4 27730644 27730824 -174597523 - L2 LINE L2 -50 3263 3111 1476 156 28 38 chr4 27730845 27731165 -174597182 + L1MC2 LINE L1 6025 6341 -3 213 65 0 0 chr4 27731186 27731217 -174597130 + (A)n Simple_repeat Simple_repeat 1 31 0 221 284 21 84 chr4 27731948 27732043 -174596304 - L2 LINE L2 -56 3216 3128 1411 234 46 9 chr4 27732106 27732284 -174596063 + MLT1A2 LTR MaLR 1 171 -203 297 0 0 0 chr4 27732284 27732317 -174596030 + (TC)n Simple_repeat Simple_repeat 2 34 0 1411 234 46 9 chr4 27732317 27732488 -174595859 + MLT1A2 LTR MaLR 171 363 -11 346 349 34 0 chr4 27732930 27733073 -174595274 + MIR SINE MIR 23 176 -32 799 226 12 0 chr4 27733078 27733242 -174595105 + L1ME LINE L1 5504 5669 -493 2139 89 7 0 chr4 27733243 27733679 -174594668 + AluSp SINE Alu 1 438 0 4759 121 41 5 chr4 27733686 27734744 -174593603 + L1MA3 LINE L1 4859 6092 -213 1921 88 3 103 chr4 27734940 27735271 -174593076 + AluSc SINE Alu 1 298 -11 1290 173 90 25 chr4 27735276 27735553 -174592794 - AluJb SINE Alu -16 296 2 275 256 135 38 chr4 27736412 27736545 -174591802 + MIR SINE MIR 46 191 -71 1560 190 31 0 chr4 27736662 27736951 -174591396 + AluJo SINE Alu 1 298 -14 804 140 0 22 chr4 27736953 27737089 -174591258 + AluJo/FLAM SINE Alu 1 133 -169 2144 108 13 3 chr4 27737089 27737396 -174590951 + AluSg SINE Alu 1 310 0 535 306 52 5 chr4 27737757 27737950 -174590397 - MIR SINE MIR -42 220 19 1750 95 0 28 chr4 27737994 27738074 -174590273 + AluSx SINE Alu 60 141 -171 2360 63 3 0 chr4 27738074 27738374 -174589973 + AluY SINE Alu 1 301 -10 1750 95 0 28 chr4 27738374 27738545 -174589802 + AluSx SINE Alu 141 304 -8 744 146 24 0 chr4 27738886 27739009 -174589338 - FLAM_A SINE Alu -4 129 4 185 271 84 56 chr4 27739763 27739870 -174588477 - MIR SINE MIR -116 146 37 362 193 0 12 chr4 27739911 27739994 -174588353 + GA-rich Low_complexity Low_complexity 5 86 0 550 255 138 11 chr4 27741075 27741263 -174587084 + MIR SINE MIR 9 220 -42 23 0 0 0 chr4 27741524 27741547 -174586800 + AT_rich Low_complexity Low_complexity 1 23 0 747 154 0 8 chr4 27741555 27741672 -174586675 + FLAM_C SINE Alu 10 125 -18 375 234 109 63 chr4 27741710 27741885 -174586462 - L1ME3 LINE L1 -70 6092 5910 245 167 125 0 chr4 27741886 27741934 -174586413 + MER63B DNA MER1_type 1 54 -382 491 178 0 9 chr4 27741941 27742048 -174586299 + GA-rich Low_complexity Low_complexity 3 108 0 1322 228 41 33 chr4 27742048 27742085 -174586262 + MER63B DNA MER1_type 40 75 -987 2432 56 0 0 chr4 27742085 27742387 -174585960 - AluY SINE Alu -9 302 1 1322 228 41 33 chr4 27742387 27742743 -174585604 + MER63B DNA MER1_type 75 436 0 1373 218 50 82 chr4 27742743 27742817 -174585530 - L1ME3 LINE L1 -246 5916 5841 1639 183 7 0 chr4 27742817 27743107 -174585240 - AluJb SINE Alu -20 292 1 1373 218 50 82 chr4 27743107 27743555 -174584792 - L1ME3 LINE L1 -321 5841 5411 473 167 0 0 chr4 27743577 27743649 -174584698 - AluJ/FLAM SINE Alu -239 73 2 386 319 34 8 chr4 27743654 27743773 -174584574 - L1ME4a LINE L1 -5 6116 5995 336 210 190 0 chr4 27743788 27743888 -174584459 - L1ME4a LINE L1 -237 5884 5766 1873 114 62 3 chr4 27744125 27744414 -174583933 + AluSx SINE Alu 1 306 -6 1003 144 0 17 chr4 27744414 27744587 -174583760 + AluSc SINE Alu 132 301 -8 518 224 121 24 chr4 27744676 27744841 -174583506 + MIR SINE MIR 32 212 -50 1734 131 33 33 chr4 27745800 27746105 -174582242 - AluSq SINE Alu -6 307 3 317 347 67 20 chr4 27746139 27746439 -174581908 + L2 LINE L2 1804 2117 -1197 440 283 18 60 chr4 27747136 27747218 -174581129 + MER20B DNA MER1_type 95 168 -615 1995 122 17 0 chr4 27747218 27747513 -174580834 + AluSx SINE Alu 3 302 -10 440 283 18 60 chr4 27747513 27747596 -174580751 + MER20B DNA MER1_type 168 253 -530 2022 116 10 0 chr4 27747596 27747889 -174580458 + AluSx SINE Alu 1 296 -16 364 323 83 47 chr4 27748091 27748283 -174580064 + MER20B DNA MER1_type 355 553 -230 280 400 44 0 chr4 27748417 27748577 -174579770 + L2 LINE L2 3076 3242 -30 635 180 29 43 chr4 27749325 27749464 -174578883 - FLAM_C SINE Alu -2 141 5 310 273 148 23 chr4 27749467 27749595 -174578752 + MIR SINE MIR 113 256 -6 1829 138 7 10 chr4 27749811 27750115 -174578232 + AluJo SINE Alu 1 303 -9 484 234 81 24 chr4 27750351 27750475 -174577872 + L2 LINE L2 3142 3272 0 329 138 31 0 chr4 27751361 27751426 -174576921 + GA-rich Low_complexity Low_complexity 2 68 0 27 62 0 0 chr4 27751449 27751497 -174576850 + AT_rich Low_complexity Low_complexity 1 48 0 1736 121 0 4 chr4 27751669 27751918 -174576429 + AluSq SINE Alu 1 248 -65 27 0 0 0 chr4 27752136 27752163 -174576184 + AT_rich Low_complexity Low_complexity 1 27 0 330 127 48 55 chr4 27752187 27752259 -174576088 + (TATAA)n Simple_repeat Simple_repeat 1 72 -494 1866 135 0 7 chr4 27752259 27752556 -174575791 - AluSx SINE Alu -17 295 1 330 127 48 55 chr4 27752556 27752757 -174575590 + (TATAA)n Simple_repeat Simple_repeat 72 566 0 436 163 60 36 chr4 27752820 27753026 -174575321 + (TATAA)n Simple_repeat Simple_repeat 1 210 0 1583 186 7 0 chr4 27753130 27753421 -174574926 + AluJb SINE Alu 6 298 -14 299 264 48 40 chr4 27753483 27753608 -174574739 - L1M4 LINE L1 -387 5791 5666 2102 110 7 0 chr4 27753683 27753984 -174574363 - AluSx SINE Alu -1 311 9 460 324 86 33 chr4 27754606 27754816 -174573531 - L1MEd LINE L1 -5054 1065 845 853 200 17 6 chr4 27755085 27755310 -174573037 - AluJb SINE Alu 0 335 109 1713 174 10 3 chr4 27755392 27755691 -174572656 - AluJo SINE Alu -11 301 1 295 295 33 25 chr4 27756112 27756234 -174572113 + MIR SINE MIR 93 215 -47 1929 106 4 15 chr4 27756409 27756683 -174571664 + AluSx SINE Alu 1 271 -41 1919 134 7 14 chr4 27756811 27757132 -174571215 + AluSx SINE Alu 1 319 0 738 228 0 0 chr4 27757168 27757295 -174571052 + AluJo SINE Alu 1 127 -175 1234 174 5 10 chr4 27757311 27757512 -174570835 + AluJb SINE Alu 1 200 -112 225 0 0 0 chr4 27757651 27757676 -174570671 + (T)n Simple_repeat Simple_repeat 1 25 0 1295 33 5 27 chr4 27758368 27758552 -174569795 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 818 174 7 27 chr4 27758666 27758815 -174569532 + AluJo SINE Alu 137 282 -30 227 79 26 0 chr4 27758817 27758855 -174569492 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2115 131 3 16 chr4 27758946 27759259 -174569088 - AluSx SINE Alu -3 309 1 254 256 61 12 chr4 27759330 27759412 -174568935 - MIR SINE MIR 0 262 177 254 261 65 22 chr4 27759429 27759521 -174568826 + MIR SINE MIR 142 237 -25 254 268 179 27 chr4 27759545 27759657 -174568690 - MIR SINE MIR -105 157 29 1545 173 87 10 chr4 27760493 27760782 -174567565 - AluJo SINE Alu 0 312 2 387 0 0 0 chr4 27760846 27760889 -174567458 + (TG)n Simple_repeat Simple_repeat 2 44 0 706 206 40 58 chr4 27760899 27761122 -174567225 - L1ME1 LINE L1 -5 6161 5943 2176 103 14 0 chr4 27761127 27761418 -174566929 - AluSx SINE Alu -17 295 1 1095 117 7 0 chr4 27761542 27761687 -174566660 - AluSq/x SINE Alu -166 146 1 22 56 0 0 chr4 27761740 27761776 -174566571 + AT_rich Low_complexity Low_complexity 1 36 0 1609 118 46 102 chr4 27761835 27762158 -174566189 + MER7A DNA MER2_type 1 303 -43 2222 120 3 25 chr4 27762160 27762476 -174565871 - AluSg SINE Alu -1 309 1 712 179 247 12 chr4 27762476 27762638 -174565709 - AluSc SINE Alu -108 201 2 458 252 243 0 chr4 27762638 27762844 -174565503 + L2 LINE L2 3051 3306 -7 939 197 0 0 chr4 27762845 27762997 -174565350 + AluJb SINE Alu 138 289 -23 2080 121 7 0 chr4 27763223 27763528 -174564819 - AluSq SINE Alu 0 307 1 459 224 6 126 chr4 27763732 27763798 -174564549 + MIR SINE MIR 2 74 -188 570 234 138 0 chr4 27763798 27763943 -174564404 - FRAM SINE Alu -1 165 1 459 224 6 126 chr4 27763943 27764013 -174564334 + MIR SINE MIR 74 113 -149 1887 129 6 31 chr4 27764013 27764330 -174564017 - AluSg SINE Alu -1 309 1 459 224 6 126 chr4 27764330 27764375 -174563972 + MIR SINE MIR 113 162 -100 2110 144 0 0 chr4 27764478 27764783 -174563564 + AluSq SINE Alu 2 306 -7 376 308 99 17 chr4 27764890 27765062 -174563285 + MIR SINE MIR 7 192 -70 2145 143 7 0 chr4 27765233 27765540 -174562807 + AluSx SINE Alu 3 311 -1 286 293 96 60 chr4 27765712 27765879 -174562468 - L3 LINE CR1 -72 1505 1333 2395 67 7 3 chr4 27766261 27766560 -174561787 - AluY SINE Alu -11 300 1 734 270 91 59 chr4 27766835 27767274 -174561073 - MARNA DNA Mariner -68 518 60 2395 94 10 0 chr4 27767274 27767581 -174560766 - AluSx SINE Alu -2 310 1 734 270 91 59 chr4 27767581 27767634 -174560713 - MARNA DNA Mariner -526 60 10 2065 129 13 19 chr4 27768136 27768445 -174559902 - AluSx SINE Alu -5 307 1 2375 95 3 0 chr4 27768874 27769170 -174559177 + AluSg SINE Alu 1 297 -13 181 262 94 81 chr4 27769305 27769454 -174558893 - MIR SINE MIR -21 241 91 2402 94 3 0 chr4 27769462 27769760 -174558587 + AluSx SINE Alu 5 303 -9 1210 148 0 0 chr4 27769760 27769936 -174558411 + AluSp SINE Alu 134 309 -4 245 222 37 0 chr4 27769937 27769991 -174558356 - MIR SINE MIR -165 97 42 647 215 7 22 chr4 27770343 27770478 -174557869 + MIR SINE MIR 32 164 -98 204 40 0 0 chr4 27770616 27770641 -174557706 + (T)n Simple_repeat Simple_repeat 1 25 0 643 162 86 0 chr4 27770654 27770759 -174557588 + AluSg SINE Alu 2 115 -195 286 168 4 55 chr4 27770769 27770868 -174557479 - Alu SINE Alu 0 302 243 837 263 48 82 chr4 27771444 27771798 -174556549 + L2 LINE L2 2931 3272 0 582 194 56 0 chr4 27771889 27771997 -174556350 + FRAM SINE Alu 1 113 -63 2190 112 0 10 chr4 27772099 27772402 -174555945 - AluSq SINE Alu -13 300 1 1983 139 0 27 chr4 27772410 27772705 -174555642 - AluSx SINE Alu -25 287 1 577 152 0 0 chr4 27772705 27772784 -174555563 - AluJ/FLAM SINE Alu -230 82 4 2005 139 10 7 chr4 27773968 27774263 -174554084 + AluSx SINE Alu 1 296 -16 32 0 0 0 chr4 27774373 27774405 -174553942 + AT_rich Low_complexity Low_complexity 1 32 0 568 167 0 0 chr4 27774410 27774512 -174553835 + AluJb SINE Alu 208 309 -3 2132 106 0 7 chr4 27774512 27774796 -174553551 - AluSx SINE Alu -30 282 1 1833 277 167 17 chr4 27774928 27775224 -174553123 + L2 LINE L2 1772 2022 -1291 895 225 120 0 chr4 27775224 27775424 -174552923 + MER58A DNA MER1_type 1 224 0 1833 277 167 17 chr4 27775424 27776183 -174552164 + L2 LINE L2 2022 2997 -316 960 91 8 0 chr4 27776189 27776310 -174552037 - AluSq/x SINE Alu -179 133 12 1930 164 3 7 chr4 27776324 27776634 -174551713 - AluSc SINE Alu 0 309 1 660 143 0 0 chr4 27776923 27777063 -174551284 + (CA)n Simple_repeat Simple_repeat 2 141 0 181 45 0 0 chr4 27777362 27777384 -174550963 - MIR SINE MIR -119 143 122 2218 103 13 0 chr4 27777675 27777975 -174550372 - AluSp SINE Alu -9 304 1 1054 172 0 11 chr4 27778384 27778558 -174549789 - AluJb SINE Alu -4 308 137 204 358 150 8 chr4 27778561 27778681 -174549666 - MER5B DNA MER1_type -39 139 3 387 230 115 0 chr4 27778700 27778787 -174549560 + MER5A DNA MER1_type 10 106 -83 436 197 98 23 chr4 27779127 27779259 -174549088 + MER51B LTR ERV1 1 142 -235 1713 136 15 67 chr4 27779313 27779578 -174548769 + MER51B LTR ERV1 64 341 -36 252 0 0 0 chr4 27779578 27779606 -174548741 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2175 84 3 28 chr4 27779614 27779898 -174548449 - AluSx SINE Alu -35 277 1 1713 136 15 67 chr4 27779898 27779954 -174548393 + MER51B LTR ERV1 348 377 0 624 218 6 86 chr4 27780134 27780261 -174548086 - MER5B DNA MER1_type 0 178 67 2282 104 7 0 chr4 27780261 27780559 -174547788 - AluSx SINE Alu -12 300 1 624 218 6 86 chr4 27780559 27780605 -174547742 - MER5B DNA MER1_type -111 67 19 2187 116 3 19 chr4 27780674 27780984 -174547363 - AluSx SINE Alu -7 305 1 1868 156 31 3 chr4 27780986 27781274 -174547073 - AluSx SINE Alu -16 296 1 573 194 25 38 chr4 27781444 27781604 -174546743 - MER53 DNA DNA -19 170 13 2185 106 3 0 chr4 27782186 27782498 -174545849 + AluSx SINE Alu 1 313 0 410 299 128 62 chr4 27782532 27783220 -174545127 - L2 LINE L2 -76 3196 2450 237 330 31 10 chr4 27783266 27783363 -174544984 + L2 LINE L2 2251 2349 -965 779 185 0 0 chr4 27783396 27783515 -174544832 + AluSq/x SINE Alu 2 120 -193 27 0 0 0 chr4 27783515 27783542 -174544805 + AT_rich Low_complexity Low_complexity 1 27 0 707 196 139 59 chr4 27783542 27783834 -174544513 - MER34C LTR ERV1 -12 530 205 2224 118 0 0 chr4 27783834 27784130 -174544217 + AluSx SINE Alu 3 298 -14 707 196 139 59 chr4 27784130 27784344 -174544003 - MER34C LTR ERV1 -337 205 9 242 318 68 61 chr4 27784439 27784571 -174543776 + MIR3 SINE MIR 55 187 -21 526 338 93 4 chr4 27784597 27784834 -174543513 + MIR SINE MIR 3 260 -2 2258 120 3 3 chr4 27784850 27785159 -174543188 + AluSc SINE Alu 1 309 0 951 257 41 8 chr4 27785246 27785491 -174542856 - MIR SINE MIR 0 262 10 1447 136 0 9 chr4 27785524 27785738 -174542609 + AluSx SINE Alu 1 212 -100 3797 89 39 10 chr4 27785765 27786761 -174541586 - MER11A LTR ERVK 0 1266 6 1227 115 5 50 chr4 27786761 27786961 -174541386 + AluSg/x SINE Alu 93 283 -27 315 49 0 0 chr4 27786961 27787002 -174541345 + (CA)n Simple_repeat Simple_repeat 2 42 0 1502 181 100 0 chr4 27787127 27787397 -174540950 + AluJo SINE Alu 1 297 -15 326 118 20 0 chr4 27787498 27787549 -174540798 - U7 snRNA snRNA -2 61 10 2350 94 0 25 chr4 27787564 27787884 -174540463 - AluSx SINE Alu 0 312 1 2216 124 0 19 chr4 27787894 27788208 -174540139 - AluSx SINE Alu 0 312 5 1874 162 7 10 chr4 27788212 27788509 -174539838 - AluJo SINE Alu -16 296 1 1759 172 0 36 chr4 27788538 27788840 -174539507 + AluJo SINE Alu 1 291 -21 2069 126 0 24 chr4 27788843 27789136 -174539211 + AluSx SINE Alu 2 287 -25 424 313 6 18 chr4 27789170 27789199 -174539148 + MER103 DNA DNA 2 30 -136 1554 53 0 0 chr4 27789199 27789387 -174538960 + L1PA5 LINE L1 5962 6149 -5 424 313 6 18 chr4 27789387 27789523 -174538824 + MER103 DNA DNA 30 165 -1 876 172 0 0 chr4 27789669 27789803 -174538544 - AluJo SINE Alu -178 134 1 184 324 59 15 chr4 27789981 27790049 -174538298 - MER5B DNA MER1_type -39 139 69 311 268 42 0 chr4 27790115 27790186 -174538161 + MER5A DNA MER1_type 3 76 -113 2141 131 0 3 chr4 27790186 27790484 -174537863 + AluSx SINE Alu 1 297 -15 398 209 209 80 chr4 27790510 27790619 -174537728 + MER102b DNA MER1_type 155 293 -1135 489 34 0 0 chr4 27790619 27790678 -174537669 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 398 209 209 80 chr4 27790678 27790731 -174537616 + MER102b DNA MER1_type 293 338 -3 260 230 74 27 chr4 27790826 27790974 -174537373 - L1ME4a LINE L1 -1 6120 5966 1635 185 7 30 chr4 27791389 27791692 -174536655 + AluJb SINE Alu 1 296 -16 2289 103 10 7 chr4 27791809 27792110 -174536237 + AluSx SINE Alu 1 302 -10 180 77 0 0 chr4 27792162 27792188 -174536159 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2183 103 0 0 chr4 27792192 27792474 -174535873 - AluSg1 SINE Alu -27 282 1 1485 183 15 7 chr4 27792474 27792748 -174535599 - AluJo SINE Alu -12 300 25 1437 172 26 63 chr4 27792777 27793080 -174535267 - AluJb SINE Alu -20 292 1 2043 158 7 0 chr4 27793144 27793454 -174534893 - AluSx SINE Alu 0 312 1 699 311 111 26 chr4 27793475 27793661 -174534686 - L3 LINE CR1 -4 1573 1404 2350 88 0 10 chr4 27793661 27793956 -174534391 + AluSx SINE Alu 1 292 -20 699 311 111 26 chr4 27793956 27794155 -174534192 - L3 LINE CR1 -173 1404 1155 292 255 20 20 chr4 27794307 27794405 -174533942 - MLT1K LTR MaLR -2 586 489 2448 70 10 16 chr4 27794443 27794756 -174533591 + AluY SINE Alu 1 311 0 1693 170 245 44 chr4 27794788 27794890 -174533457 - LTR29 LTR ERV1 0 622 542 2185 126 3 3 chr4 27794890 27795200 -174533147 - AluSx SINE Alu -2 310 1 1693 170 245 44 chr4 27795200 27795375 -174532972 - LTR29 LTR ERV1 -80 542 403 2243 122 0 3 chr4 27795375 27795679 -174532668 + AluSx SINE Alu 1 303 -9 1693 170 245 44 chr4 27795679 27795918 -174532429 - LTR29 LTR ERV1 -219 403 1 2112 133 7 3 chr4 27796017 27796318 -174532029 + AluSx SINE Alu 1 302 -10 875 144 17 72 chr4 27796318 27796499 -174531848 + AluJb SINE Alu 134 304 -8 448 329 79 20 chr4 27796512 27796804 -174531543 - MLT1K LTR MaLR -244 344 36 2139 140 0 25 chr4 27796829 27797150 -174531197 - AluSq SINE Alu 0 313 1 290 340 0 0 chr4 27797151 27797251 -174531096 - MIR SINE MIR -102 160 61 725 112 0 0 chr4 27797251 27797349 -174530998 + AluS SINE Alu 2 99 -213 1766 110 12 0 chr4 27797461 27797706 -174530641 - AluSg SINE Alu -62 248 1 371 344 92 40 chr4 27797731 27797958 -174530389 + L1ME LINE L1 5581 5819 -302 1073 90 0 0 chr4 27797970 27798104 -174530243 + AluYb8 SINE Alu 1 134 -184 2136 116 3 0 chr4 27798104 27798389 -174529958 + AluY SINE Alu 1 286 -25 1313 182 13 63 chr4 27798496 27798656 -174529691 + MLT1A1 LTR MaLR 1 139 -226 1627 149 8 0 chr4 27798656 27798898 -174529449 + AluSg/x SINE Alu 67 310 -2 1313 182 13 63 chr4 27798898 27799055 -174529292 + MLT1A1 LTR MaLR 139 302 -63 200 0 100 0 chr4 27799068 27799098 -174529249 + T-rich Low_complexity Low_complexity 3 35 0 2308 110 0 0 chr4 27799100 27799408 -174528939 - AluSq SINE Alu -5 308 1 239 167 0 0 chr4 27799408 27799456 -174528891 + MLT1A1 LTR MaLR 304 351 -14 278 294 54 22 chr4 27799806 27799898 -174528449 - MIR SINE MIR -128 134 40 1003 185 28 32 chr4 27800148 27800364 -174527983 + MER20 DNA MER1_type 5 219 0 2289 125 0 0 chr4 27800831 27801143 -174527204 - AluSx SINE Alu 0 312 1 2267 113 0 0 chr4 27801166 27801457 -174526890 - AluSg SINE Alu -19 291 1 189 338 14 40 chr4 27801457 27801605 -174526742 + L2 LINE L2 1970 2113 -1201 182 61 0 30 chr4 27802291 27802324 -174526023 + (TTTTTA)n Simple_repeat Simple_repeat 4 35 0 2003 151 0 6 chr4 27802329 27802640 -174525707 - AluSx SINE Alu -3 309 1 2170 117 7 13 chr4 27802675 27802983 -174525364 + AluSp SINE Alu 1 306 -7 21 36 0 0 chr4 27803187 27803215 -174525132 + AT_rich Low_complexity Low_complexity 1 28 0 1866 120 58 0 chr4 27803488 27803786 -174524561 + AluSx SINE Alu 1 312 0 2428 55 34 7 chr4 27803840 27804132 -174524215 + AluY SINE Alu 1 300 -11 2106 151 0 0 chr4 27804134 27804433 -174523914 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr4 27804433 27804456 -174523891 + AT_rich Low_complexity Low_complexity 1 23 0 2126 141 3 3 chr4 27804984 27805296 -174523051 - AluSx SINE Alu 0 312 1 977 181 86 19 chr4 27805458 27805668 -174522679 + AluJo SINE Alu 88 311 -1 1222 130 0 0 chr4 27805912 27806074 -174522273 - AluSx SINE Alu -149 163 2 471 300 196 19 chr4 27806180 27806619 -174521728 - L2 LINE L2 -229 3084 2724 584 191 27 0 chr4 27806619 27806729 -174521618 + MER81 DNA DNA 2 114 0 471 300 196 19 chr4 27806729 27806912 -174521435 - L2 LINE L2 -589 2724 2349 21 0 0 0 chr4 27807847 27807868 -174520479 + AT_rich Low_complexity Low_complexity 1 21 0 * 611 199 12 35 chr4 27807856 27807868 -174520479 + MER96B DNA MER1_type? 250 261 -156 2184 117 0 0 chr4 27807868 27808151 -174520196 + AluSx SINE Alu 1 283 -29 611 199 12 35 chr4 27808151 27808309 -174520038 + MER96B DNA MER1_type? 261 416 -1 868 173 0 0 chr4 27808368 27808501 -174519846 - FLAM_C SINE Alu -10 133 1 195 42 0 0 chr4 27808513 27808537 -174519810 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1350 133 25 0 chr4 27808538 27808723 -174519624 - AluSp SINE Alu 0 317 124 2424 95 3 9 chr4 27808723 27809038 -174519309 - AluSp SINE Alu 0 313 1 1350 133 25 0 chr4 27809038 27809080 -174519267 - AluSp SINE Alu -193 124 85 2212 127 7 0 chr4 27809337 27809645 -174518702 + AluSx SINE Alu 1 310 -2 1338 179 19 4 chr4 27809903 27810222 -174518125 + MLT1A1 LTR MaLR 3 365 0 1563 113 9 5 chr4 27810664 27810876 -174517471 + AluSx SINE Alu 2 214 -98 2200 82 41 10 chr4 27810878 27811172 -174517175 + AluYa5 SINE Alu 1 303 -8 602 152 0 45 chr4 27811172 27811284 -174517063 + AluSx SINE Alu 203 309 0 323 289 33 0 chr4 27811323 27811413 -174516934 + MIR SINE MIR 85 177 -85 651 246 22 39 chr4 27811464 27811643 -174516704 - MIR SINE MIR -22 240 65 2178 141 0 0 chr4 27811766 27812078 -174516269 + AluJo SINE Alu 1 312 0 25 0 0 0 chr4 27812078 27812103 -174516244 + AT_rich Low_complexity Low_complexity 1 25 0 311 324 152 25 chr4 27812122 27812557 -174515790 + L2 LINE L2 2372 2861 -453 242 200 0 0 chr4 27812559 27812604 -174515743 - L2 LINE L2 -7 3306 3262 361 393 78 16 chr4 27812654 27812911 -174515436 + L2 LINE L2 2986 3258 -14 1565 184 42 0 chr4 27812912 27813200 -174515147 + AluJb SINE Alu 1 300 -12 1750 191 0 16 chr4 27813212 27813516 -174514831 + AluJo SINE Alu 2 300 -12 425 186 233 0 chr4 27813551 27813637 -174514710 + FLAM_A SINE Alu 1 106 -36 224 181 24 36 chr4 27813658 27813686 -174514661 + (TA)n Simple_repeat Simple_repeat 2 29 -54 2344 98 3 0 chr4 27813686 27813981 -174514366 + AluSp SINE Alu 1 296 -17 224 181 24 36 chr4 27813981 27814035 -174514312 + (TA)n Simple_repeat Simple_repeat 29 83 0 357 333 17 0 chr4 27814339 27814456 -174513891 - MER5B DNA MER1_type -3 175 57 1203 209 112 43 chr4 27814457 27814734 -174513613 - AluJo SINE Alu -5 297 2 1982 142 14 0 chr4 27814755 27815043 -174513304 - AluJb SINE Alu -20 292 1 1127 192 28 14 chr4 27815081 27815295 -174513052 + AluJo SINE Alu 87 303 -9 182 250 28 0 chr4 27815295 27815331 -174513016 - MER5B DNA MER1_type -133 45 9 2185 116 0 3 chr4 27815593 27815887 -174512460 + AluSx SINE Alu 1 293 -19 1142 158 0 0 chr4 27815893 27816058 -174512289 + AluSg/x SINE Alu 130 294 -18 1077 141 86 0 chr4 27816058 27816256 -174512091 + MLT1B LTR MaLR 176 390 0 896 138 0 38 chr4 27816417 27816599 -174511748 + L1PA10 LINE L1 5995 6170 0 1097 122 11 75 chr4 27816619 27816803 -174511544 - AluJ SINE Alu 0 307 135 2104 121 30 3 chr4 27816803 27817100 -174511247 - AluSx SINE Alu -5 307 3 1097 122 11 75 chr4 27817100 27817127 -174511220 - AluJ SINE Alu -172 135 108 1208 133 6 0 chr4 27817133 27817306 -174511041 + AluSq SINE Alu 136 309 -4 747 179 0 8 chr4 27817307 27817424 -174510923 - AluJ SINE Alu -195 117 2 1106 239 13 32 chr4 27817475 27817851 -174510496 - MER113 DNA MER1_type? -152 369 1 220 211 0 0 chr4 27818047 27818085 -174510262 + L2 LINE L2 3225 3262 -51 837 177 0 108 chr4 27818149 27818352 -174509995 - AluJo SINE Alu -12 300 120 915 201 0 18 chr4 27818357 27818526 -174509821 - FRAM SINE Alu 0 166 1 445 235 12 100 chr4 27819438 27819532 -174508815 - L2 LINE L2 0 3313 3212 828 191 0 0 chr4 27819532 27819658 -174508689 + FLAM_A SINE Alu 5 130 -3 445 235 12 100 chr4 27819658 27819677 -174508670 - L2 LINE L2 -101 3212 3193 2112 118 11 0 chr4 27819677 27819987 -174508360 - AluSx SINE Alu 0 313 1 445 235 12 100 chr4 27819987 27820041 -174508306 - L2 LINE L2 -120 3193 3159 24 0 0 0 chr4 27820045 27820069 -174508278 + AT_rich Low_complexity Low_complexity 1 24 0 2303 110 0 3 chr4 27820777 27821086 -174507261 - AluSx SINE Alu -4 308 1 1621 158 0 52 chr4 27821610 27821901 -174506446 + AluSx SINE Alu 29 304 -8 797 146 0 76 chr4 27823081 27823225 -174505122 + FLAM_C SINE Alu 1 133 0 2280 119 3 0 chr4 27823339 27823649 -174504698 + AluSx SINE Alu 1 311 -1 1123 136 0 0 chr4 27823861 27824023 -174504324 - AluSg/x SINE Alu -12 298 137 809 171 0 27 chr4 27825059 27825205 -174503142 - FLAM_C SINE Alu -1 142 1 1879 143 0 14 chr4 27825239 27825526 -174502821 - AluSx SINE Alu -29 283 1 3889 107 37 90 chr4 27825616 27825798 -174502549 - LTR8 LTR ERV1 0 691 501 1637 79 120 0 chr4 27825798 27826014 -174502333 - AluY SINE Alu -23 288 47 3889 107 37 90 chr4 27826014 27826561 -174501786 - LTR8 LTR ERV1 -190 501 1 2254 112 16 0 chr4 27826633 27826936 -174501411 - AluSx SINE Alu -4 308 1 1881 150 3 30 chr4 27826938 27827238 -174501109 - AluJb SINE Alu -20 292 1 265 291 12 139 chr4 27827319 27827441 -174500906 + L2 LINE L2 3040 3135 -137 2017 136 20 13 chr4 27827441 27827742 -174500605 + AluSx SINE Alu 1 303 -9 265 291 12 139 chr4 27827742 27827791 -174500556 + L2 LINE L2 3135 3189 -83 947 154 0 0 chr4 27827865 27828008 -174500339 + FLAM_C SINE Alu 1 143 0 403 241 14 189 chr4 27828174 27828283 -174500064 + MER45A DNA AcHobo 4 130 -1451 2384 88 13 0 chr4 27828283 27828589 -174499758 - AluSx SINE Alu -2 310 1 403 241 14 189 chr4 27828589 27828612 -174499735 + MER45A DNA AcHobo 130 89 -1492 2417 92 0 10 chr4 27828612 27828926 -174499421 - AluSp SINE Alu -2 311 1 403 241 14 189 chr4 27828926 27829004 -174499343 + MER45A DNA AcHobo 88 178 0 2360 94 0 3 chr4 27829172 27829471 -174498876 - AluSc SINE Alu -11 298 1 547 250 30 0 chr4 27829552 27829684 -174498663 - MER113 DNA MER1_type? -152 369 234 4986 78 38 0 chr4 27830069 27830732 -174497615 + LTR12 LTR ERV1 1 688 0 477 0 0 0 chr4 27831003 27831056 -174497291 + (TG)n Simple_repeat Simple_repeat 2 54 0 2214 96 3 3 chr4 27831059 27831350 -174496997 - AluSg SINE Alu -19 291 1 336 143 0 0 chr4 27831965 27832021 -174496326 + (T)n Simple_repeat Simple_repeat 1 56 0 1063 162 0 5 chr4 27832267 27832452 -174495895 + AluSg/x SINE Alu 126 309 -1 302 306 87 37 chr4 27833080 27833322 -174495025 - L1M2 LINE L1 -4852 1997 1744 554 231 75 15 chr4 27833364 27833498 -174494849 - FLAM_A SINE Alu 0 142 1 303 232 74 0 chr4 27834573 27834668 -174493679 + MIR SINE MIR 90 191 -71 1309 209 8 15 chr4 27834690 27834958 -174493389 - AluJo SINE Alu -23 289 24 2198 113 0 10 chr4 27834993 27835285 -174493062 + AluSg1 SINE Alu 1 289 -20 29 84 0 0 chr4 27835489 27835560 -174492787 + AT_rich Low_complexity Low_complexity 1 71 0 744 150 110 8 chr4 27835778 27835905 -174492442 - AluSq/x SINE Alu -171 141 2 274 299 55 8 chr4 27835906 27836033 -174492314 + Charlie8 DNA MER1_type 96 228 -2189 1368 172 28 88 chr4 27836087 27836407 -174491940 - AluJo SINE Alu -11 301 1 2071 108 14 0 chr4 27836459 27836737 -174491610 + AluSg SINE Alu 1 282 -28 384 22 0 0 chr4 27836737 27836782 -174491565 + (CA)n Simple_repeat Simple_repeat 2 46 0 1120 116 0 72 chr4 27836793 27836974 -174491373 + AluSg/x SINE Alu 135 302 -8 410 264 81 7 chr4 27838574 27838722 -174489625 + Charlie8 DNA MER1_type 107 265 -2152 2410 72 0 10 chr4 27838795 27839088 -174489259 - AluY SINE Alu -19 292 3 1514 149 138 0 chr4 27839115 27839383 -174488964 - AluSx SINE Alu -7 305 1 22 0 0 0 chr4 27839575 27839597 -174488750 + AT_rich Low_complexity Low_complexity 1 22 0 346 298 282 0 chr4 27840330 27840511 -174487836 - MIR SINE MIR -17 245 14 25 31 0 0 chr4 27841383 27841415 -174486932 + GC_rich Low_complexity Low_complexity 1 32 0 246 371 35 0 chr4 27842025 27842141 -174486206 + MIR SINE MIR 33 152 -56 761 202 0 0 chr4 27843585 27843704 -174484643 - FLAM_C SINE Alu -23 120 2 295 191 79 0 chr4 27843886 27843949 -174484398 + MIR SINE MIR 81 148 -114 365 252 108 18 chr4 27844043 27844154 -174484193 - L2 LINE L2 -9 3263 3143 204 139 0 23 chr4 27844710 27844753 -174483594 + (CCCCCA)n Simple_repeat Simple_repeat 5 46 0 361 276 166 20 chr4 27844954 27845153 -174483194 + MIR SINE MIR 14 241 -21 495 225 135 34 chr4 27845362 27845540 -174482807 - MIR SINE MIR 0 262 67 207 385 42 21 chr4 27845961 27846057 -174482290 - L2 LINE L2 -37 3235 3138 240 150 100 62 chr4 27846171 27846251 -174482096 - L1ME LINE L1 -475 5646 5564 2295 102 3 0 chr4 27846363 27846657 -174481690 - AluSq SINE Alu -18 295 1 425 270 120 40 chr4 27846932 27847132 -174481215 - MIR SINE MIR 0 262 47 2015 142 0 3 chr4 27847212 27847500 -174480847 - AluSq SINE Alu -26 287 1 2384 97 3 0 chr4 27847681 27847981 -174480366 - AluSq SINE Alu -9 304 4 2057 92 70 0 chr4 27848795 27849066 -174479281 - AluSg SINE Alu -20 290 1 283 267 67 27 chr4 27849202 27849277 -174479070 - L2 LINE L2 -39 3274 3197 305 246 94 58 chr4 27850239 27850377 -174477970 - MIR3 SINE MIR -11 197 55 2333 92 0 3 chr4 27850976 27851280 -174477067 - AluSp SINE Alu -10 303 1 196 255 75 75 chr4 27851333 27851427 -174476920 + MIR3 SINE MIR 79 172 -36 893 172 5 68 chr4 27852327 27852548 -174475799 - MER3 DNA MER1_type 0 209 3 686 102 102 55 chr4 27852714 27852841 -174475506 - FLAM_C SINE Alu 0 133 1 2182 138 3 0 chr4 27853042 27853353 -174474994 + AluSx SINE Alu 1 312 0 227 258 32 32 chr4 27853361 27853423 -174474924 - MER91A DNA MER1_type -134 62 1 286 260 87 47 chr4 27853981 27854108 -174474239 + MIR SINE MIR 119 250 -12 2302 81 37 0 chr4 27854183 27854478 -174473869 + AluSx SINE Alu 1 306 -6 825 160 0 0 chr4 27854944 27855094 -174473253 - L1MA4A LINE L1 -4 6299 6150 192 303 10 50 chr4 27855242 27855341 -174473006 + MIR SINE MIR 109 203 -59 1725 161 14 10 chr4 27855753 27856045 -174472302 + AluSx SINE Alu 1 293 -19 349 226 86 11 chr4 27857677 27857770 -174470577 - MIR SINE MIR -67 141 42 391 163 8 19 chr4 27857864 27858100 -174470247 + AluSx SINE Alu 1 292 -8 350 325 66 7 chr4 27858696 27858847 -174469500 - MLT1J LTR MaLR -343 168 9 272 326 163 31 chr4 27860512 27860708 -174467639 + L3 LINE CR1 1279 1500 -77 2084 125 0 3 chr4 27860832 27861143 -174467204 - AluSg SINE Alu 0 310 1 459 292 58 15 chr4 27861145 27861282 -174467065 + MIR SINE MIR 50 192 -70 353 184 116 23 chr4 27861323 27861516 -174466831 - Charlie5 DNA MER1_type -5 2607 2364 379 297 158 15 chr4 27861580 27861782 -174466565 + MIR SINE MIR 13 243 -19 250 244 12 12 chr4 27862337 27862423 -174465924 + (CTG)n Simple_repeat Simple_repeat 3 88 0 776 134 0 0 chr4 27864372 27864484 -174463863 - FLAM_C SINE Alu -23 120 9 23 0 0 0 chr4 27864496 27864519 -174463828 + AT_rich Low_complexity Low_complexity 1 23 0 275 146 0 0 chr4 27865013 27865054 -174463293 - MER45 DNA AcHobo -44 1537 1497 * 1612 179 150 43 chr4 27865049 27865218 -174463129 - MER45B DNA AcHobo -226 814 664 2111 113 0 0 chr4 27865218 27865511 -174462836 - AluSx SINE Alu -19 293 1 1612 179 150 43 chr4 27865511 27865755 -174462592 - MER45B DNA AcHobo -376 664 357 1909 93 7 18 chr4 27865797 27866077 -174462270 + AluSq SINE Alu 1 277 -36 231 311 264 5 chr4 27866196 27866389 -174461958 + MIR SINE MIR 8 250 -12 2230 101 0 0 chr4 27866725 27867023 -174461324 - AluSx SINE Alu -14 298 1 1825 155 23 0 chr4 27867417 27867721 -174460626 + AluSx SINE Alu 1 311 -1 812 203 7 0 chr4 27867833 27867986 -174460361 - FRAM SINE Alu -12 154 1 180 330 88 22 chr4 27867992 27868083 -174460264 - MIR SINE MIR -49 213 117 1951 123 0 0 chr4 27868299 27868617 -174459730 + AluSx SINE Alu 1 312 0 2106 124 0 0 chr4 27868854 27869161 -174459186 + AluSx SINE Alu 1 307 -5 1065 186 132 8 chr4 27869890 27870010 -174458337 + AluJb SINE Alu 1 105 -207 279 0 0 0 chr4 27870010 27870041 -174458306 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1065 186 132 8 chr4 27870041 27870162 -174458185 + AluJb SINE Alu 105 272 -40 1522 166 22 50 chr4 27870162 27870268 -174458079 + AluJo SINE Alu 1 108 -204 2262 81 0 16 chr4 27870268 27870578 -174457769 - AluSq SINE Alu -8 305 1 1522 166 22 50 chr4 27870578 27870791 -174457556 + AluJo SINE Alu 108 311 -1 2053 142 0 0 chr4 27871005 27871316 -174457031 - AluSx SINE Alu -1 311 1 1863 117 7 10 chr4 27871317 27871633 -174456714 - AluSx SINE Alu 0 312 1 2055 116 0 7 chr4 27871909 27872211 -174456136 + AluSx SINE Alu 2 301 -11 310 268 42 0 chr4 27872444 27872515 -174455832 + MER5A DNA MER1_type 3 76 -113 1727 158 10 7 chr4 27872515 27872807 -174455540 + AluSx SINE Alu 1 293 -19 276 201 151 7 chr4 27872902 27873041 -174455306 - AluSc SINE Alu -20 279 121 380 153 111 0 chr4 27873197 27873269 -174455078 - AluSp/q SINE Alu -46 257 178 821 118 0 0 chr4 27873273 27873392 -174454955 - AluJb SINE Alu -193 119 1 3784 142 10 10 chr4 27873809 27874427 -174453920 - L1PA15 LINE L1 -125 6040 5423 1545 170 7 20 chr4 27875593 27875899 -174452448 + AluSx SINE Alu 1 302 -10 188 182 68 23 chr4 27876236 27876280 -174452067 - MER5B DNA MER1_type -108 70 25 1239 99 0 0 chr4 27876480 27876641 -174451706 - AluSq SINE Alu -130 183 23 1276 204 38 14 chr4 27876658 27876947 -174451400 - AluJo SINE Alu -11 301 6 719 140 28 84 chr4 27877068 27877247 -174451100 - AluSg/x SINE Alu -25 284 116 293 225 6 129 chr4 27877258 27877436 -174450911 - AluSg/x SINE Alu -13 287 132 1844 127 4 4 chr4 27879190 27879465 -174448882 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr4 27879472 27879492 -174448855 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 355 200 89 0 chr4 27879492 27879582 -174448765 + L1M4 LINE L1 4989 5086 -1060 831 169 69 12 chr4 27879583 27879743 -174448604 - FRAM SINE Alu -8 168 1 559 178 9 0 chr4 27879743 27879850 -174448497 + L1M4 LINE L1 5080 5187 -959 449 156 220 0 chr4 27879884 27879993 -174448354 - MER51C LTR ERV1 0 640 508 1268 120 0 5 chr4 27879997 27880181 -174448166 - AluSg/x SINE Alu -25 287 105 2173 107 0 0 chr4 27880658 27880956 -174447391 - AluSx SINE Alu -14 298 1 1803 123 32 32 chr4 27881251 27881565 -174446782 - AluSx SINE Alu 0 314 1 487 180 11 0 chr4 27881900 27881989 -174446358 - AluS SINE Alu -218 94 5 2152 88 10 3 chr4 27882047 27882341 -174446006 + AluSx SINE Alu 1 296 -16 281 266 35 71 chr4 27882341 27882510 -174445837 - HAL1 LINE L1 -42 2465 2303 324 194 16 31 chr4 27882745 27882874 -174445473 + CT-rich Low_complexity Low_complexity 4 130 0 315 209 196 88 chr4 27882880 27883028 -174445319 - HAL1 LINE L1 -817 1690 1527 371 221 108 49 chr4 27883062 27883280 -174445067 + MLT1H LTR MaLR 301 549 0 1588 155 0 82 chr4 27883465 27883596 -174444751 + AluJo SINE Alu 1 141 -171 1516 140 41 62 chr4 27883596 27883888 -174444459 + AluSx SINE Alu 1 286 -26 1588 155 0 82 chr4 27883888 27884075 -174444272 + AluJo SINE Alu 141 294 -18 2009 134 3 0 chr4 27884075 27884373 -174443974 - AluSq SINE Alu -12 301 3 24 0 0 0 chr4 27885373 27885397 -174442950 + AT_rich Low_complexity Low_complexity 1 24 0 306 303 36 72 chr4 27885885 27886080 -174442267 + L1ME LINE L1 4281 4468 -1678 1212 95 0 0 chr4 27886092 27886250 -174442097 + AluSg SINE Alu 1 158 -152 1357 173 0 0 chr4 27886258 27886506 -174441841 + AluJb SINE Alu 57 304 0 227 288 0 0 chr4 27886506 27886572 -174441775 + L1ME LINE L1 4989 5054 -1092 1904 100 50 11 chr4 27886576 27886856 -174441491 + AluSq SINE Alu 1 291 -22 30 0 0 0 chr4 27886856 27886886 -174441461 + AT_rich Low_complexity Low_complexity 1 30 0 261 318 68 9 chr4 27887066 27887286 -174441061 + L1ME LINE L1 5259 5491 -671 1981 130 13 0 chr4 27887287 27887587 -174440760 + AluSq SINE Alu 1 304 -9 2028 136 3 3 chr4 27887603 27887912 -174440435 + AluSx SINE Alu 1 309 -3 305 252 117 108 chr4 27887927 27888238 -174440109 + L1ME LINE L1 5504 5820 -350 2239 101 3 0 chr4 27888238 27888536 -174439811 - AluSx SINE Alu -13 299 1 305 252 117 108 chr4 27888536 27888565 -174439782 + L1ME LINE L1 5820 5847 -323 811 114 0 79 chr4 27888588 27888712 -174439635 + FLAM_C SINE Alu 1 114 -198 183 42 0 0 chr4 27888712 27888736 -174439611 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 811 114 0 79 chr4 27888736 27888751 -174439596 + FLAM_C SINE Alu 114 129 -183 297 0 0 0 chr4 27888894 27888927 -174439420 + (CA)n Simple_repeat Simple_repeat 2 34 0 1985 82 11 11 chr4 27888957 27889239 -174439108 - AluSc SINE Alu -3 306 25 1121 162 25 0 chr4 27889343 27889465 -174438882 + MER2 DNA MER2_type 136 266 -79 1857 154 3 0 chr4 27889465 27889763 -174438584 - AluSx SINE Alu -13 299 1 1121 162 25 0 chr4 27889763 27889838 -174438509 + MER2 DNA MER2_type 266 338 -7 907 148 29 135 chr4 27890431 27890498 -174437849 + MER20 DNA MER1_type 2 75 -144 1980 114 3 19 chr4 27890498 27890813 -174437534 + AluSg SINE Alu 1 310 0 907 148 29 135 chr4 27890813 27890989 -174437358 + MER20 DNA MER1_type 75 219 0 2153 85 10 10 chr4 27890999 27891305 -174437042 + AluSc SINE Alu 1 306 -3 297 0 0 0 chr4 27891335 27891368 -174436979 + (TG)n Simple_repeat Simple_repeat 2 34 0 183 42 0 0 chr4 27891526 27891550 -174436797 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 841 108 0 8 chr4 27891550 27891670 -174436677 - AluSg SINE Alu -191 119 1 306 303 36 72 chr4 27891682 27891877 -174436470 - L1 LINE L1 -1678 4468 4281 758 271 104 0 chr4 27892134 27892355 -174435992 - Charlie8 DNA MER1_type -2141 276 33 1978 130 3 24 chr4 27892454 27892807 -174435540 - MER4A LTR ERV1 0 664 261 664 111 0 10 chr4 27892807 27892906 -174435441 - MER4A LTR ERV1 -566 98 1 1740 164 31 68 chr4 27893278 27893423 -174434924 + MLT1B LTR MaLR 1 150 -240 2123 97 0 17 chr4 27893423 27893722 -174434625 - AluSx SINE Alu -12 300 7 1740 164 31 68 chr4 27893722 27894080 -174434267 + MLT1B LTR MaLR 150 390 0 1942 150 0 0 chr4 27894187 27894487 -174433860 + AluSx SINE Alu 1 300 -12 297 242 153 33 chr4 27894487 27894632 -174433715 - LTR16A LTR ERVL -97 360 182 705 137 43 81 chr4 27894670 27894831 -174433516 + MER20B DNA MER1_type 65 219 0 340 333 45 6 chr4 27894831 27895008 -174433339 - LTR16A1 LTR ERVL -255 202 19 1188 139 26 5 chr4 27895079 27895273 -174433074 + MSTA LTR MaLR 1 198 -230 27 0 0 0 chr4 27895273 27895300 -174433047 + AT_rich Low_complexity Low_complexity 1 27 0 1624 134 38 4 chr4 27895310 27895572 -174432775 + AluSx SINE Alu 1 271 -41 203 193 18 0 chr4 27895575 27895632 -174432715 + (TA)n Simple_repeat Simple_repeat 1 58 0 1552 148 12 8 chr4 27895655 27895899 -174432448 + MSTA LTR MaLR 184 428 0 642 259 45 25 chr4 27895899 27896100 -174432247 - MIR SINE MIR -38 224 20 243 0 0 0 chr4 27896602 27896629 -174431718 + (CA)n Simple_repeat Simple_repeat 2 28 0 286 235 111 12 chr4 27898195 27898276 -174430071 + MIR3 SINE MIR 111 199 -9 1283 200 97 29 chr4 27898792 27898975 -174429372 + MER58B DNA MER1_type 11 225 -2195 2267 93 0 3 chr4 27898975 27899288 -174429059 + AluSx SINE Alu 1 312 0 1283 200 97 29 chr4 27899288 27899414 -174428933 + MER58B DNA MER1_type 225 341 0 231 176 33 0 chr4 27900649 27900740 -174427607 + (TA)n Simple_repeat Simple_repeat 2 95 0 2175 91 3 0 chr4 27900852 27901139 -174427208 + AluSp SINE Alu 1 288 -25 189 0 0 0 chr4 27901145 27901166 -174427181 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 265 225 0 36 chr4 27901420 27901555 -174426792 + AluJ/monomer SINE Alu 244 297 -5 2020 108 0 0 chr4 27901584 27901870 -174426477 + AluSx SINE Alu 19 304 -8 1902 131 28 0 chr4 27902054 27902344 -174426003 - AluSq SINE Alu -15 298 1 686 272 34 15 chr4 27902354 27902560 -174425787 - MIR SINE MIR -45 217 8 1965 128 7 0 chr4 27903133 27903452 -174424895 + AluSx SINE Alu 1 321 0 2109 104 3 0 chr4 27903452 27903739 -174424608 + AluSp SINE Alu 1 288 -25 189 0 0 0 chr4 27903745 27903766 -174424581 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1007 157 0 0 chr4 27903783 27903942 -174424405 - AluSg/x SINE Alu -15 295 137 494 279 109 12 chr4 27904066 27904231 -174424116 + MER5A DNA MER1_type 9 189 0 809 201 38 0 chr4 27904235 27904444 -174423903 + MER20B DNA MER1_type 567 783 0 1459 192 51 10 chr4 27904508 27904683 -174423664 - AluJo SINE Alu -8 304 111 315 0 0 0 chr4 27904683 27904718 -174423629 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1459 192 51 10 chr4 27904718 27904834 -174423513 - AluJo SINE Alu -201 111 1 427 219 19 48 chr4 27904855 27904960 -174423387 + MIR3 SINE MIR 92 193 -15 551 282 75 55 chr4 27905860 27906115 -174422232 - MIR SINE MIR -1 261 2 2293 99 0 0 chr4 27906417 27906729 -174421618 + AluSx SINE Alu 1 312 0 207 0 0 0 chr4 27906889 27906912 -174421435 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr4 27906919 27906940 -174421407 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 27907498 27907519 -174420828 + AT_rich Low_complexity Low_complexity 1 21 0 1949 149 0 0 chr4 27907621 27907917 -174420430 + AluSx SINE Alu 2 297 -15 829 158 0 0 chr4 27908112 27908245 -174420102 - AluSq/x SINE Alu -179 133 1 4686 114 48 7 chr4 27909349 27910074 -174418273 - L1PA13 LINE L1 -1 6162 5408 955 219 26 17 chr4 27910224 27910457 -174417890 - MIR SINE MIR -18 244 10 1794 123 0 0 chr4 27910636 27910887 -174417460 - AluSq SINE Alu -62 251 1 254 251 34 86 chr4 27911011 27911344 -174417003 + L1M2 LINE L1 5265 5586 -656 2125 131 16 7 chr4 27911374 27911680 -174416667 - AluSx SINE Alu -3 309 1 224 333 45 38 chr4 27911826 27911958 -174416389 + L2 LINE L2 3140 3272 0 350 216 11 23 chr4 27912499 27912587 -174415760 + FLAM SINE Alu 47 133 0 780 200 7 0 chr4 27912624 27912774 -174415573 - MLT1B LTR MaLR -213 177 27 697 225 77 28 chr4 27912832 27913038 -174415309 - MLT1G3 LTR MaLR -107 435 180 368 224 0 0 chr4 27913046 27913113 -174415234 - MLT1G3 LTR MaLR -500 67 1 2059 88 78 0 chr4 27913225 27913509 -174414838 - AluSg SINE Alu -4 306 1 701 153 221 0 chr4 27914203 27914274 -174414073 + MER96 DNA MER1_type? 13 67 -108 1115 219 132 47 chr4 27914274 27914639 -174413708 - MSTD LTR MaLR 0 396 1 701 153 221 0 chr4 27914639 27914698 -174413649 + MER96 DNA MER1_type? 67 172 -3 1682 132 0 0 chr4 27914822 27915057 -174413290 - AluSx SINE Alu -15 297 63 464 225 58 0 chr4 27916114 27916234 -174412113 + MIR SINE MIR 37 163 -99 2132 122 3 0 chr4 27916535 27916853 -174411494 + AluSq SINE Alu 1 319 0 251 277 36 0 chr4 27916854 27916937 -174411410 - MIR SINE MIR -48 214 129 2017 121 18 0 chr4 27917057 27917337 -174411010 + AluSx SINE Alu 1 285 -27 654 105 11 0 chr4 27917366 27917461 -174410886 - L1MB5 LINE L1 -15 6159 6064 1000 185 12 0 chr4 27917462 27917635 -174410712 - AluJb SINE Alu -4 308 134 2437 92 0 0 chr4 27917635 27917939 -174410408 - AluSg SINE Alu -6 304 1 1042 190 5 24 chr4 27917939 27918150 -174410197 - L1MB5 LINE L1 -104 6070 5864 1084 139 6 0 chr4 27918157 27918323 -174410024 - AluSg/x SINE Alu -12 300 134 201 256 26 39 chr4 27918370 27918448 -174409899 - MIR SINE MIR -57 205 129 528 127 59 51 chr4 27918478 27918596 -174409751 - L1M LINE L1 -811 5373 5255 2613 164 34 69 chr4 27918656 27918936 -174409411 - L1MB5 LINE L1 -294 5880 5592 2225 108 0 40 chr4 27918936 27919260 -174409087 + AluSx SINE Alu 1 311 -1 2613 164 34 69 chr4 27919260 27919721 -174408626 - L1MB5 LINE L1 -582 5592 5179 2117 145 0 0 chr4 27919721 27920024 -174408323 - AluSx SINE Alu -9 303 1 1775 173 3 28 chr4 27920025 27920343 -174408004 - AluJo SINE Alu -1 311 2 457 238 0 0 chr4 27920345 27920446 -174407901 - AluJo/FLAM SINE Alu -181 131 31 2992 162 26 95 chr4 27920466 27921003 -174407344 + MER51C LTR ERV1 1 573 -67 2306 113 0 3 chr4 27921003 27921312 -174407035 - AluSg SINE Alu -2 308 1 2992 162 26 95 chr4 27921312 27921347 -174407000 + MER51C LTR ERV1 573 522 -118 2102 122 0 7 chr4 27921347 27921635 -174406712 + AluSx SINE Alu 2 287 -25 2992 162 26 95 chr4 27921635 27921748 -174406599 + MER51C LTR ERV1 521 640 0 563 178 9 0 chr4 27921782 27921889 -174406458 - L1MB5 LINE L1 -959 5187 5080 824 161 71 13 chr4 27921889 27922044 -174406303 + FRAM SINE Alu 1 163 -13 781 199 37 65 chr4 27922045 27922140 -174406207 - L1MB5 LINE L1 -1055 5091 4995 180 0 0 0 chr4 27922140 27922160 -174406187 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2244 79 0 18 chr4 27922167 27922447 -174405900 - AluSx SINE Alu -37 275 1 781 199 37 65 chr4 27922447 27922559 -174405788 - L1MB5 LINE L1 -1157 4989 4882 22 0 0 0 chr4 27922797 27922819 -174405528 + AT_rich Low_complexity Low_complexity 1 22 0 1919 145 35 0 chr4 27922973 27923263 -174405084 - AluSx SINE Alu -10 302 3 195 276 40 0 chr4 27923265 27923341 -174405006 + MIR SINE MIR 161 239 -23 251 27 0 27 chr4 27923359 27923396 -174404951 + (ATG)n Simple_repeat Simple_repeat 2 37 0 2185 114 3 3 chr4 27923496 27923803 -174404544 - AluSx SINE Alu -5 307 1 250 323 38 19 chr4 27924235 27924393 -174403954 + L1ME LINE L1 4795 4955 -1191 1994 131 3 3 chr4 27924394 27924790 -174403557 - AluSx SINE Alu 0 396 1 665 168 0 0 chr4 27925129 27925236 -174403111 + FLAM_C SINE Alu 2 108 -35 25 0 0 0 chr4 27925244 27925269 -174403078 + AT_rich Low_complexity Low_complexity 1 25 0 1593 219 74 39 chr4 27925269 27925785 -174402562 + L1MC4a LINE L1 5409 5942 -1866 893 278 127 9 chr4 27925951 27926559 -174401788 + L1ME LINE L1 5128 5814 -348 2048 159 0 0 chr4 27926763 27927072 -174401275 + AluSx SINE Alu 1 309 -3 329 58 19 0 chr4 27927072 27927124 -174401223 + L1MA3 LINE L1 6253 6305 0 2256 102 0 0 chr4 27927303 27927596 -174400751 + AluSx SINE Alu 2 294 -18 529 228 117 33 chr4 27927645 27927825 -174400522 + MIR SINE MIR 45 239 -23 2141 110 3 0 chr4 27928813 27929095 -174399252 + AluSp SINE Alu 1 283 -30 225 0 0 0 chr4 27929099 27929124 -174399223 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 276 261 34 11 chr4 27931701 27931789 -174396558 + MLT1I LTR MaLR 57 146 -263 831 262 118 42 chr4 27931851 27932351 -174395996 - MER34 LTR ERV1 -4 538 1 4035 159 30 13 chr4 27932415 27932543 -174395804 - LTR62 LTR ERVK -2 717 593 917 137 0 0 chr4 27932543 27932674 -174395673 - FLAM_C SINE Alu -1 132 2 4035 159 30 13 chr4 27932674 27933250 -174395097 - LTR62 LTR ERVK -126 593 1 2014 140 0 31 chr4 27934055 27934377 -174393970 + AluJb SINE Alu 1 312 0 2375 85 13 0 chr4 27934378 27934730 -174393617 + AluY SINE Alu 1 356 0 3709 137 9 67 chr4 27935056 27935236 -174393111 - MER41B LTR ERV1 0 635 446 2145 115 7 0 chr4 27935236 27935531 -174392816 - AluSx SINE Alu -15 297 1 3709 137 9 67 chr4 27935531 27936022 -174392325 - MER41B LTR ERV1 -189 446 3 21 0 0 0 chr4 27936144 27936165 -174392182 + AT_rich Low_complexity Low_complexity 1 21 0 2458 87 0 10 chr4 27936165 27936475 -174391872 + AluSg SINE Alu 1 307 -3 1211 158 30 107 chr4 27936723 27936962 -174391385 - MLT1B LTR MaLR -2 388 181 2319 88 0 13 chr4 27936962 27937269 -174391078 - AluSc SINE Alu -6 303 1 1211 158 30 107 chr4 27937269 27937365 -174390982 - MLT1B LTR MaLR -209 181 79 238 280 53 15 chr4 27938363 27938495 -174389852 + L2 LINE L2 2885 3021 -251 1193 122 269 12 chr4 27938562 27938807 -174389540 + AluSg1 SINE Alu 1 308 -1 1733 221 89 63 chr4 27938807 27939349 -174388998 + MER49 LTR ERV1 19 756 -167 2225 119 0 0 chr4 27939349 27939652 -174388695 + AluSx SINE Alu 1 303 -9 1733 221 89 63 chr4 27939652 27939825 -174388522 + MER49 LTR ERV1 756 923 0 303 93 0 0 chr4 27939828 27939871 -174388476 + (TTC)n Simple_repeat Simple_repeat 3 45 0 1764 78 149 30 chr4 27939873 27940141 -174388206 - AluSq SINE Alu -13 300 1 2220 107 0 7 chr4 27940664 27940963 -174387384 + AluSx SINE Alu 1 297 -15 1524 234 47 38 chr4 27941256 27941708 -174386639 - L1ME2 LINE L1 -9 6155 5700 1870 154 0 4 chr4 27941708 27941988 -174386359 + AluSx SINE Alu 1 279 -33 198 191 0 0 chr4 27941988 27942030 -174386317 + GA-rich Low_complexity Low_complexity 1 42 0 387 208 104 0 chr4 27942037 27942133 -174386214 - L1ME2 LINE L1 -459 5707 5602 594 204 49 21 chr4 27942133 27942275 -174386072 + MER53 DNA DNA 4 149 -40 1232 185 56 79 chr4 27942301 27942657 -174385690 - L1ME2 LINE L1 -553 5613 5266 1940 125 0 28 chr4 27942675 27942962 -174385385 - AluSx SINE Alu -32 280 2 4160 223 108 88 chr4 27942962 27943441 -174384906 - L1ME2 LINE L1 -1427 4719 4251 2112 89 31 14 chr4 27943441 27943732 -174384615 - AluSg SINE Alu -14 296 1 4160 223 108 88 chr4 27943732 27943928 -174384419 - L1ME2 LINE L1 -1895 4251 4060 2185 98 19 26 chr4 27943928 27944108 -174384239 - AluSx SINE Alu -7 305 126 181 0 69 0 chr4 27944108 27944137 -174384210 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 2185 98 19 26 chr4 27944137 27944263 -174384084 - AluSx SINE Alu -186 126 1 4160 223 108 88 chr4 27944263 27944484 -174383863 - L1ME2 LINE L1 -2086 4060 3845 2065 136 7 0 chr4 27944484 27944786 -174383561 - AluSx SINE Alu -8 304 1 4160 223 108 88 chr4 27944786 27945123 -174383224 - L1ME2 LINE L1 -2301 3845 3516 781 199 0 0 chr4 27945123 27945254 -174383093 - FLAM_C SINE Alu -4 139 9 4160 223 108 88 chr4 27945254 27945741 -174382606 - L1ME2 LINE L1 -2630 3516 3040 2553 66 0 0 chr4 27945741 27946046 -174382301 - AluY SINE Alu -6 305 1 4160 223 108 88 chr4 27946046 27946131 -174382216 - L1ME2 LINE L1 -3106 3040 2958 237 33 0 0 chr4 27946131 27946161 -174382186 + (TG)n Simple_repeat Simple_repeat 1 30 0 2205 96 0 0 chr4 27946161 27946441 -174381906 - AluSq SINE Alu -33 280 1 4160 223 108 88 chr4 27946441 27946862 -174381485 - L1ME2 LINE L1 -3187 2959 2310 2351 107 7 0 chr4 27946892 27947200 -174381147 - AluSg SINE Alu 0 310 1 1387 213 14 60 chr4 27947202 27947554 -174380793 - MLT1A2 LTR MaLR -38 336 1 1501 144 45 0 chr4 27947560 27947803 -174380544 + MER2 DNA MER2_type 1 254 -91 1978 158 3 0 chr4 27947808 27948106 -174380241 - AluSx SINE Alu -13 299 1 1889 134 7 0 chr4 27948273 27948576 -174379771 + AluSx SINE Alu 14 312 0 2145 126 0 7 chr4 27949247 27949548 -174378799 - AluSx SINE Alu -13 299 1 1495 175 175 20 chr4 27949652 27949963 -174378384 + MER93a LTR ERV1 1 373 -29 3247 140 8 14 chr4 27949963 27950385 -174377962 - MER75 DNA T2_type -2 512 92 2220 119 0 3 chr4 27950385 27950688 -174377659 + AluSg1 SINE Alu 3 304 -5 3247 140 8 14 chr4 27950688 27950780 -174377567 - MER75 DNA T2_type -422 92 1 1495 175 175 20 chr4 27950780 27950816 -174377531 + MER93a LTR ERV1 373 402 0 2312 121 54 56 chr4 27951064 27951163 -174377184 + MSTC LTR MaLR 1 99 -329 1751 157 4 4 chr4 27951163 27951452 -174376895 + AluSg SINE Alu 14 302 0 2312 121 54 56 chr4 27951452 27951780 -174376567 + MSTC LTR MaLR 99 428 0 2204 109 0 0 chr4 27951930 27952242 -174376105 + AluSx SINE Alu 1 312 0 615 139 15 17 chr4 27952297 27952443 -174375904 - Charlie5 DNA MER1_type -180 2432 2330 289 203 17 0 chr4 27952476 27952535 -174375812 + MLT1H1 LTR MaLR 6 65 -490 1563 163 54 7 chr4 27952543 27952819 -174375528 - AluSx SINE Alu -21 291 3 884 227 0 32 chr4 27952835 27953020 -174375327 + AluJb SINE Alu 123 301 -11 581 200 9 0 chr4 27953033 27953148 -174375199 + Charlie5 DNA MER1_type 1 116 -2496 1875 143 35 7 chr4 27953150 27953436 -174374911 - AluSx SINE Alu -18 294 1 1465 143 15 61 chr4 27953486 27953745 -174374602 + Charlie5 DNA MER1_type 2290 2560 -64 1894 129 54 0 chr4 27953745 27954023 -174374324 - AluSx SINE Alu -19 293 1 5302 140 137 42 chr4 27954024 27955153 -174373194 - MER11B LTR ERVK 0 1236 1 1465 143 15 61 chr4 27955153 27955233 -174373114 + Charlie5 DNA MER1_type 2559 2615 -9 2364 97 6 3 chr4 27955330 27955641 -174372706 + AluSq SINE Alu 2 313 0 625 129 10 10 chr4 27955674 27955775 -174372572 + Tigger2a DNA MER2_type 1 101 -333 1326 191 5 5 chr4 27955777 27955997 -174372350 + AluJo SINE Alu 1 220 -92 309 163 0 0 chr4 27955997 27956046 -174372301 + AluJo SINE Alu 86 134 -168 461 280 29 63 chr4 27956162 27956401 -174371946 - MIR SINE MIR 0 262 32 2020 112 4 0 chr4 27956457 27956726 -174371621 + AluSq SINE Alu 1 270 -43 1677 120 0 8 chr4 27956735 27956969 -174371378 + AluJb SINE Alu 1 232 -80 1309 105 0 0 chr4 27956969 27957140 -174371207 + AluSq SINE Alu 131 301 -12 762 136 16 0 chr4 27957140 27957265 -174371082 + L1MC1 LINE L1 6064 6190 -143 1812 155 10 13 chr4 27957767 27958071 -174370276 + AluJo SINE Alu 1 303 -9 2313 91 7 3 chr4 27958087 27958385 -174369962 + AluSx SINE Alu 1 299 -13 202 338 98 8 chr4 27958448 27958581 -174369766 - L2 LINE L2 0 3313 3169 386 281 41 0 chr4 27958652 27958773 -174369574 + MIR SINE MIR 67 192 -70 370 132 0 85 chr4 27959285 27959390 -174368957 + AluS SINE Alu 3 74 -229 2256 118 0 10 chr4 27959888 27960194 -174368153 - AluSx SINE Alu -9 303 1 492 265 26 58 chr4 27960362 27960470 -174367877 + MIR SINE MIR 78 179 -83 3559 118 8 4 chr4 27960470 27960979 -174367368 - MER9 LTR ERVK 0 511 1 492 265 26 58 chr4 27960979 27961059 -174367288 + MIR SINE MIR 179 260 -2 21 0 0 0 chr4 27961106 27961127 -174367220 + AT_rich Low_complexity Low_complexity 1 21 0 1548 183 14 28 chr4 27961129 27961439 -174366908 + AluJo SINE Alu 2 307 0 697 197 8 15 chr4 27961476 27961608 -174366739 + AluJb SINE Alu 7 137 -175 851 247 50 44 chr4 27961608 27961983 -174366364 - MLT1G3 LTR MaLR -47 548 83 2647 68 31 6 chr4 27961983 27962336 -174366011 + MER4E LTR ERV1 1 362 -404 300 25 0 50 chr4 27962363 27962403 -174365944 - MER4E LTR ERV1 -380 386 349 2060 91 0 0 chr4 27962405 27962657 -174365690 + AluSg SINE Alu 2 253 -57 1427 98 0 0 chr4 27962658 27962832 -174365515 - AluSc SINE Alu -133 176 3 3403 55 2 5 chr4 27962833 27963255 -174365092 + MER4E LTR ERV1 346 766 0 2065 134 3 13 chr4 27963256 27963561 -174364786 - AluSx SINE Alu -6 306 5 393 281 36 7 chr4 27963561 27963693 -174364654 - MLT1F1 LTR MaLR -425 142 4 530 240 39 144 chr4 27963696 27963981 -174364366 - MLT1F1-int LTR MaLR 0 1371 1135 2211 109 0 3 chr4 27963981 27964275 -174364072 - AluSg SINE Alu -17 293 1 530 240 39 144 chr4 27964275 27964372 -174363975 - MLT1F1-int LTR MaLR -236 1135 1029 2080 120 33 0 chr4 27964480 27964781 -174363566 - AluSx SINE Alu -1 311 1 725 251 0 0 chr4 27964820 27964983 -174363364 + FRAM SINE Alu 8 170 -6 2010 150 3 3 chr4 27965042 27965348 -174362999 - AluSx SINE Alu -6 306 1 594 158 0 0 chr4 27965362 27965457 -174362890 + FLAM_C SINE Alu 47 141 -2 356 220 68 49 chr4 27965477 27965617 -174362730 - MLT1B LTR MaLR -211 179 51 2343 78 10 0 chr4 27965917 27966210 -174362137 + AluSc SINE Alu 1 296 -13 21 36 0 0 chr4 27966389 27966417 -174361930 + AT_rich Low_complexity Low_complexity 1 28 0 504 253 38 38 chr4 27966540 27966726 -174361621 - MIR SINE MIR -32 230 45 23 0 0 0 chr4 27966752 27966775 -174361572 + AT_rich Low_complexity Low_complexity 1 23 0 1878 148 36 0 chr4 27966784 27967062 -174361285 + AluJb SINE Alu 1 288 -24 435 273 0 0 chr4 27967223 27967322 -174361025 + L1MD3 LINE L1 7085 7183 -812 * 2227 184 19 9 chr4 27967318 27967748 -174360599 + L1MD3 LINE L1 7553 7986 -9 2105 124 3 0 chr4 27968222 27968512 -174359835 - AluJb SINE Alu -21 291 1 2068 122 16 13 chr4 27968851 27969155 -174359192 - AluJb SINE Alu -5 307 3 2117 133 0 3 chr4 27969375 27969675 -174358672 + AluSx SINE Alu 1 299 -13 1384 242 109 40 chr4 27969682 27970145 -174358202 - LTR33A LTR ERVL 0 523 45 1990 120 37 7 chr4 27970228 27970528 -174357819 + AluSx SINE Alu 1 309 -3 23 33 0 0 chr4 27971176 27971206 -174357141 + AT_rich Low_complexity Low_complexity 1 30 0 871 266 104 74 chr4 27971489 27972251 -174356096 + L1ME4a LINE L1 5314 6081 -40 1843 141 7 14 chr4 27973062 27973359 -174354988 + AluSx SINE Alu 1 295 -17 2475 103 0 0 chr4 27973676 27973987 -174354360 + AluSx SINE Alu 1 311 -1 454 327 46 0 chr4 27975556 27975773 -174352574 + L1ME3 LINE L1 5493 5719 -451 360 163 57 8 chr4 27975778 27975901 -174352446 + GA-rich Low_complexity Low_complexity 3 131 0 329 263 92 106 chr4 27975903 27976008 -174352339 + L1ME3 LINE L1 5738 5843 -319 2318 111 3 0 chr4 27976008 27976314 -174352033 - AluSx SINE Alu -4 308 2 329 263 92 106 chr4 27976314 27976425 -174351922 + L1ME3 LINE L1 5843 5951 -211 306 50 0 0 chr4 27977629 27977669 -174350678 + (CCAA)n Simple_repeat Simple_repeat 4 43 0 1968 104 59 0 chr4 27977799 27978069 -174350278 + AluSx SINE Alu 3 288 -24 1820 252 21 79 chr4 27979971 27980924 -174347423 + L1MEc LINE L1 2048 2921 -3294 2261 219 77 58 chr4 27981058 27981090 -174347257 + HAL1 LINE L1 1597 1627 -880 946 218 69 5 chr4 27981090 27981292 -174347055 - MER58C DNA MER1_type 0 215 1 2261 219 77 58 chr4 27981292 27982075 -174346272 + HAL1 LINE L1 1627 2428 -79 31 26 0 0 chr4 27982116 27982154 -174346193 + AT_rich Low_complexity Low_complexity 1 38 0 254 224 35 0 chr4 27982154 27982212 -174346135 + HAL1 LINE L1 2447 2506 -1 694 285 5 5 chr4 27983028 27983235 -174345112 + MIR SINE MIR 18 224 -38 1223 260 121 19 chr4 27983269 27983923 -174344424 + L2 LINE L2 2371 3092 -221 268 144 53 8 chr4 27983925 27984057 -174344290 + (TA)n Simple_repeat Simple_repeat 1 138 0 1902 137 0 62 chr4 27984057 27984363 -174343984 - AluSx SINE Alu -25 287 1 570 279 66 20 chr4 27984364 27984561 -174343786 + L2 LINE L2 3101 3306 -7 1467 134 0 0 chr4 27984574 27984775 -174343572 + AluSx SINE Alu 1 201 -111 406 275 45 45 chr4 27984849 27985027 -174343320 + MIR SINE MIR 71 248 -14 272 351 11 0 chr4 27986780 27986874 -174341473 + (TG)n Simple_repeat Simple_repeat 1 95 0 251 315 45 0 chr4 27988555 27988644 -174339703 - MIR SINE MIR -156 106 14 239 293 49 41 chr4 27988990 27989113 -174339234 - MIR3 SINE MIR -7 201 78 221 271 0 0 chr4 27989265 27989313 -174339034 + L2 LINE L2 3266 3313 0 199 266 70 47 chr4 27989840 27989968 -174338379 + L2 LINE L2 3137 3267 -5 657 215 20 62 chr4 27990313 27990508 -174337839 + MIR SINE MIR 22 208 -54 2307 96 3 0 chr4 27990545 27990838 -174337509 - AluSx SINE Alu -18 294 1 468 0 0 0 chr4 27991787 27991839 -174336508 + (TG)n Simple_repeat Simple_repeat 2 53 0 236 270 0 16 chr4 27992368 27992431 -174335916 + CT-rich Low_complexity Low_complexity 1 62 0 1842 149 20 17 chr4 27992521 27992822 -174335525 + AluJo SINE Alu 1 302 -10 662 283 157 25 chr4 27993355 27993641 -174334706 + MLT1I LTR MaLR 84 407 -2 1109 113 0 4 chr4 27993796 27994056 -174334291 + (GGAA)n Simple_repeat Simple_repeat 1 258 0 1069 306 51 42 chr4 27994141 27994693 -174333654 + MARNA DNA Mariner 10 566 -20 1801 126 8 0 chr4 27994881 27995144 -174333203 + AluSx SINE Alu 33 297 -15 239 247 65 0 chr4 27995433 27995510 -174332837 - MIR SINE MIR -72 190 109 291 329 71 0 chr4 27995920 27996060 -174332287 - MIR SINE MIR -95 167 18 226 151 57 0 chr4 27996062 27996115 -174332232 + T-rich Low_complexity Low_complexity 4 59 0 640 305 44 0 chr4 27996222 27996425 -174331922 - MIR SINE MIR -31 231 20 1663 109 0 13 chr4 27996509 27996738 -174331609 - AluJb SINE Alu -22 290 65 276 357 49 0 chr4 27996823 27996966 -174331381 + MIR SINE MIR 18 167 -95 334 213 27 13 chr4 27997008 27997083 -174331264 + MIR SINE MIR 36 111 -151 6412 72 17 43 chr4 27997118 27998427 -174329920 + L1PA10 LINE L1 4868 6154 -14 213 200 0 0 chr4 27998460 27998505 -174329842 + L2 LINE L2 3210 3254 -18 355 265 88 29 chr4 27998731 27998901 -174329446 - MIR SINE MIR -54 208 29 825 137 0 15 chr4 27999533 27999664 -174328683 + FLAM_C SINE Alu 5 133 0 24 0 0 0 chr4 27999682 27999706 -174328641 + AT_rich Low_complexity Low_complexity 1 24 0 1620 110 57 4 chr4 27999741 27999969 -174328378 + AluSq SINE Alu 15 254 -59 211 0 57 29 chr4 27999987 28000022 -174328325 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 180 191 0 44 chr4 28000171 28000239 -174328108 + GA-rich Low_complexity Low_complexity 3 67 0 350 247 27 0 chr4 28000262 28000408 -174327939 + GA-rich Low_complexity Low_complexity 1 150 0 335 262 113 51 chr4 28000952 28001288 -174327059 - L2 LINE L2 -10 3262 2906 277 271 31 0 chr4 28001602 28001698 -174326649 + MER5B DNA MER1_type 61 159 -19 2395 104 0 3 chr4 28001761 28002070 -174326277 + AluSx SINE Alu 1 308 -4 992 192 61 0 chr4 28002093 28002291 -174326056 - MLT1B LTR MaLR -8 382 173 9947 43 3 4 chr4 28002497 28003718 -174324629 + L1P LINE L1 3350 4569 -1577 2011 120 18 4 chr4 28004059 28004381 -174323966 - AluSc SINE Alu 0 326 1 2512 167 25 4 chr4 28005072 28005557 -174322790 - L1P LINE L1 -1596 4550 4056 2232 110 53 11 chr4 28005557 28005898 -174322449 + L1PA13 LINE L1 5790 6159 -4 1566 172 8 0 chr4 28005944 28006206 -174322141 - AluSx SINE Alu -14 298 35 27 81 0 0 chr4 28006429 28006491 -174321856 + GC_rich Low_complexity Low_complexity 1 62 0 21 0 0 0 chr4 28007801 28007822 -174320525 + AT_rich Low_complexity Low_complexity 1 21 0 649 244 91 14 chr4 28008849 28009058 -174319289 - MIR SINE MIR -24 238 14 2311 92 0 13 chr4 28010187 28010520 -174317827 + AluSc SINE Alu 1 309 0 1826 147 7 11 chr4 28010828 28011113 -174317234 - AluSx SINE Alu -28 284 1 802 162 0 22 chr4 28011116 28011252 -174317095 - AluJo/FLAM SINE Alu -169 133 1 256 286 0 0 chr4 28011286 28011342 -174317005 + polypyrimidine Low_complexity Low_complexity 2 57 0 183 129 0 0 chr4 28013405 28013436 -174314911 + (T)n Simple_repeat Simple_repeat 1 31 0 1970 130 27 0 chr4 28014107 28014400 -174313947 + AluSq SINE Alu 1 301 -12 2200 103 3 0 chr4 28014405 28014705 -174313642 + AluSx SINE Alu 6 306 -6 3490 168 19 26 chr4 28014705 28015397 -174312950 + L1MB2 LINE L1 5483 6169 -2 191 244 0 0 chr4 28015964 28016005 -174312342 + L2 LINE L2 3226 3266 -6 508 240 45 26 chr4 28016738 28016892 -174311455 + MIR SINE MIR 29 185 -77 198 71 0 0 chr4 28017819 28017847 -174310500 + (T)n Simple_repeat Simple_repeat 1 28 0 2150 100 0 17 chr4 28018666 28018967 -174309380 - AluSx SINE Alu -16 296 1 251 372 0 0 chr4 28018974 28019052 -174309295 - L2 LINE L2 -1 3312 3235 2044 103 3 3 chr4 28019863 28020154 -174308193 + AluSx SINE Alu 1 291 -21 530 191 9 27 chr4 28020179 28020289 -174308058 + MER58A DNA MER1_type 10 117 0 254 185 0 108 chr4 28020298 28020363 -174307984 + MER58A DNA MER1_type 165 222 -2 1292 166 39 75 chr4 28020374 28020469 -174307878 - MER33 DNA MER1_type -2262 323 226 2352 88 0 0 chr4 28020469 28020776 -174307571 + AluSx SINE Alu 1 307 -5 1292 166 39 75 chr4 28020776 28021011 -174307336 - MER33 DNA MER1_type -2359 226 5 809 234 0 18 chr4 28021174 28021345 -174307002 - FRAM SINE Alu -8 168 1 353 306 81 6 chr4 28022146 28022306 -174306041 + MIR3 SINE MIR 31 202 -6 2287 81 3 0 chr4 28022532 28022830 -174305517 - AluSc SINE Alu -10 299 1 712 155 23 52 chr4 28023098 28023272 -174305075 + L1MB8 LINE L1 6001 6169 -9 2354 93 0 0 chr4 28023288 28023598 -174304749 + AluSx SINE Alu 1 310 -2 1440 284 55 6 chr4 28023652 28024142 -174304205 - L1MC4a LINE L1 -1953 5855 5342 445 337 26 5 chr4 28024324 28024514 -174303833 + L2 LINE L2 2877 3070 -202 2936 168 25 7 chr4 28024722 28025276 -174303071 - L1MB3 LINE L1 0 6183 5620 1765 118 8 0 chr4 28025290 28025544 -174302803 - AluSx SINE Alu -21 291 36 894 200 6 6 chr4 28025646 28025806 -174302541 - MLT1B LTR MaLR -226 164 5 2088 111 0 0 chr4 28027379 28027668 -174300679 + AluSx SINE Alu 2 290 -22 1905 110 0 0 chr4 28028848 28029112 -174299235 - AluY SINE Alu -21 290 27 21 0 0 0 chr4 28029121 28029142 -174299205 + AT_rich Low_complexity Low_complexity 1 21 0 613 239 0 0 chr4 28029395 28029533 -174298814 - MIR3 SINE MIR -15 193 56 2071 201 45 69 chr4 28029762 28030295 -174298052 + MLT2B1 LTR ERVL 1 520 0 722 272 30 25 chr4 28031495 28031697 -174296650 - MIR SINE MIR 0 262 60 260 254 68 0 chr4 28031976 28032035 -174296312 - L2 LINE L2 -1 3271 3209 2398 55 3 0 chr4 28032285 28032593 -174295754 - AluY SINE Alu -1 310 2 353 257 29 14 chr4 28033403 28033543 -174294804 - L1MC/D LINE L1 -1984 5824 5683 23 0 0 0 chr4 28034238 28034261 -174294086 + AT_rich Low_complexity Low_complexity 1 23 0 1015 59 0 15 chr4 28035045 28035181 -174293166 + AluY SINE Alu 1 134 -177 2058 75 0 14 chr4 28035181 28035463 -174292884 + AluY SINE Alu 1 278 -33 2184 161 79 25 chr4 28035835 28036276 -174292071 + MLT1C LTR MaLR 1 465 -2 212 270 110 68 chr4 28036313 28036476 -174291871 + L2 LINE L2 2822 2991 -322 3645 172 62 47 chr4 28036808 28037659 -174290688 + L1MB2 LINE L1 5260 6121 -50 2193 93 0 3 chr4 28037659 28037950 -174290397 + AluSq SINE Alu 7 296 -17 3645 172 62 47 chr4 28037950 28037995 -174290352 + L1MB2 LINE L1 6121 6164 -7 740 163 64 7 chr4 28038360 28038501 -174289846 + MLT1C LTR MaLR 1 149 -318 319 296 23 0 chr4 28039010 28039098 -174289249 + CT-rich Low_complexity Low_complexity 6 95 0 1019 179 29 57 chr4 28039137 28039448 -174288899 + MLT1A1 LTR MaLR 6 365 0 698 252 47 95 chr4 28039520 28039882 -174288465 - L1MC5 LINE L1 -30 7931 7610 1969 125 17 0 chr4 28039882 28040179 -174288168 + AluSx SINE Alu 1 302 -10 698 252 47 95 chr4 28040179 28040450 -174287897 - L1MC5 LINE L1 -351 7610 7328 325 326 68 0 chr4 28040457 28040604 -174287743 - L1MC4 LINE L1 -565 7477 7321 * 438 271 53 0 chr4 28040598 28040731 -174287616 - L1MC4a LINE L1 -632 7176 7037 537 323 67 30 chr4 28040743 28041043 -174287304 + MARNA DNA Mariner 268 578 -8 317 170 0 0 chr4 28041043 28041090 -174287257 - L1MC4 LINE L1 -1338 6704 6658 203 245 0 0 chr4 28041637 28041690 -174286657 - MIR3 SINE MIR -5 203 151 486 245 138 19 chr4 28041707 28041866 -174286481 - MIR3 SINE MIR -25 183 6 438 294 20 33 chr4 28042230 28042383 -174285964 + MIR3 SINE MIR 19 169 -39 432 245 122 27 chr4 28042876 28043143 -174285204 - LTR16C LTR ERVL -3 488 145 696 275 96 95 chr4 28043324 28043980 -174284367 - L2 LINE L2 0 3313 2657 1442 235 138 11 chr4 28043981 28044427 -174283920 - MLT1E3 LTR MaLR 0 608 122 482 277 69 35 chr4 28044507 28044767 -174283580 - L2 LINE L2 -646 2668 2400 411 323 32 8 chr4 28044917 28045041 -174283306 - MIR SINE MIR -116 146 20 2127 97 0 0 chr4 28045058 28045346 -174283001 - AluSx SINE Alu 0 312 25 1564 146 76 7 chr4 28045640 28045915 -174282432 - AluJo SINE Alu -18 294 1 2111 121 88 36 chr4 28046095 28046458 -174281889 - MLT1B LTR MaLR -8 382 1 1474 74 26 0 chr4 28047005 28047195 -174281152 - AluSx SINE Alu -117 195 1 604 256 150 24 chr4 28047353 28047817 -174280530 + MLT1H1 LTR MaLR 1 555 0 732 257 104 27 chr4 28048270 28048638 -174279709 + L2 LINE L2 2731 3146 -167 1587 150 18 18 chr4 28048646 28048926 -174279421 + AluJo SINE Alu 1 280 -32 249 109 0 0 chr4 28048926 28048972 -174279375 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 1214 149 5 0 chr4 28048972 28049167 -174279180 + AluYa5 SINE Alu 108 303 -8 306 250 207 43 chr4 28049186 28049302 -174279045 + L2 LINE L2 3179 3313 0 2510 99 48 14 chr4 28049868 28050220 -174278127 - THE1B LTR MaLR 0 364 1 319 329 35 7 chr4 28051164 28051307 -174277040 - LTR67 LTR ERVL 0 557 411 552 226 149 6 chr4 28051511 28051679 -174276668 + MIR SINE MIR 1 192 -70 415 259 37 37 chr4 28051873 28052008 -174276339 + L2 LINE L2 3179 3313 0 261 270 0 27 chr4 28052020 28052094 -174276253 + L2 LINE L2 3238 3309 -4 202 212 91 15 chr4 28052579 28052645 -174275702 + MIR SINE MIR 80 150 -112 697 250 114 116 chr4 28052716 28053293 -174275054 - MLT1K LTR MaLR -11 577 2 2204 92 0 7 chr4 28053305 28053608 -174274739 - AluSg SINE Alu 0 310 10 236 373 59 26 chr4 28053821 28053974 -174274373 + L2 LINE L2 3115 3272 0 252 220 0 0 chr4 28054423 28054473 -174273874 + GA-rich Low_complexity Low_complexity 4 53 0 257 339 9 18 chr4 28054970 28055082 -174273265 + C-rich Low_complexity Low_complexity 3 113 0 393 221 80 18 chr4 28055395 28055508 -174272839 + MIR SINE MIR 20 139 -123 557 270 98 28 chr4 28055621 28055836 -174272511 - MIR SINE MIR -4 258 29 1055 145 17 90 chr4 28056661 28056895 -174271452 + MER20 DNA MER1_type 3 219 0 2023 102 41 3 chr4 28057107 28057400 -174270947 - AluSq SINE Alu -9 304 1 1691 142 8 0 chr4 28057453 28057721 -174270626 - AluSx SINE Alu -19 293 24 779 301 1 23 chr4 28057824 28058046 -174270301 - MIR SINE MIR -10 252 35 330 273 40 53 chr4 28058117 28058267 -174270080 + MIR SINE MIR 73 220 -42 186 286 0 0 chr4 28058642 28058698 -174269649 + L2 LINE L2 2641 2696 -618 271 301 35 55 chr4 28058698 28058822 -174269525 - L1MDa LINE L1 -3302 3238 3118 2560 42 0 0 chr4 28058822 28059130 -174269217 - AluY SINE Alu -3 308 1 271 301 35 55 chr4 28059130 28059204 -174269143 - L1MDa LINE L1 -3422 3118 3044 569 292 98 51 chr4 28059234 28059399 -174268948 - L1MDa LINE L1 -3640 2900 2744 2017 96 0 33 chr4 28059399 28059702 -174268645 - AluSq SINE Alu -20 293 1 569 292 98 51 chr4 28059702 28059778 -174268569 - L1MDa LINE L1 -3796 2744 2673 2833 6 0 0 chr4 28059778 28060092 -174268255 - AluYb8 SINE Alu -4 314 1 569 292 98 51 chr4 28060092 28060222 -174268125 - L1MDa LINE L1 -3867 2673 2551 1860 124 13 35 chr4 28060222 28060536 -174267811 - AluSx SINE Alu -5 307 1 569 292 98 51 chr4 28060536 28060656 -174267691 - L1MDa LINE L1 -3989 2551 2386 555 196 49 0 chr4 28061103 28061205 -174267142 + Tigger3(Golem) DNA MER2_type 2 108 -2921 * 4494 123 37 12 chr4 28061196 28061930 -174266417 + Tigger3(Golem) DNA MER2_type 2277 3028 -1 965 316 108 58 chr4 28061940 28062144 -174266203 - L2 LINE L2 -583 2731 2538 816 130 8 23 chr4 28062144 28062275 -174266072 + FLAM_C SINE Alu 5 133 0 965 316 108 58 chr4 28062275 28063371 -174264976 - L2 LINE L2 -776 2538 1367 269 273 324 0 chr4 28064297 28064436 -174263911 - MIR3 SINE MIR 0 208 25 911 112 0 0 chr4 28065253 28065387 -174262960 + AluSg/x SINE Alu 176 309 -3 957 200 5 152 chr4 28065388 28065717 -174262630 - L1MC4 LINE L1 -19 8023 7754 1545 136 106 12 chr4 28065717 28066047 -174262300 + MER46B DNA MER2_type 1 236 0 957 200 5 152 chr4 28066047 28066092 -174262255 - L1MC4 LINE L1 -288 7754 7704 188 0 74 0 chr4 28066108 28066135 -174262212 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2128 101 3 0 chr4 28066137 28066424 -174261923 - AluSq SINE Alu -24 289 2 1737 115 7 7 chr4 28069888 28070157 -174258190 + AluSx SINE Alu 23 291 -21 2138 102 78 3 chr4 28071155 28071488 -174256859 - MER46B DNA MER2_type -3 233 1 271 152 15 30 chr4 28071491 28071557 -174256790 + CT-rich Low_complexity Low_complexity 3 67 0 852 292 12 19 chr4 28071983 28072240 -174256107 + MIR SINE MIR 8 262 0 659 276 174 39 chr4 28072294 28072726 -174255621 - LTR33 LTR ERVL -29 492 3 425 285 124 30 chr4 28072890 28073157 -174255190 + MLT1I LTR MaLR 118 409 0 272 224 158 103 chr4 28074217 28074270 -174254077 - MER5B DNA MER1_type -4 174 125 1953 137 0 3 chr4 28074270 28074577 -174253770 + AluSx SINE Alu 1 306 -6 272 224 158 103 chr4 28074577 28074688 -174253659 - MER5B DNA MER1_type -53 125 1 997 150 15 75 chr4 28074697 28074756 -174253591 + MER5A DNA MER1_type 2 63 -126 1651 191 45 17 chr4 28074756 28075111 -174253236 + MLT1A1 LTR MaLR 1 365 0 997 150 15 75 chr4 28075111 28075251 -174253096 + MER5A DNA MER1_type 63 189 0 469 247 85 89 chr4 28075312 28075559 -174252788 - MIR SINE MIR -7 255 10 1665 192 32 118 chr4 28076130 28076697 -174251650 - MLT2B1 LTR ERVL -2 518 1 1051 190 4 58 chr4 28076728 28076954 -174251393 - MER20 DNA MER1_type -5 214 1 324 264 105 111 chr4 28077261 28077604 -174250743 + MLT1K LTR MaLR 124 533 -55 4297 179 44 32 chr4 28077624 28078319 -174250028 + MER21B LTR ERV1 6 714 -149 183 80 0 0 chr4 28078319 28078344 -174250003 + (AATTG)n Simple_repeat Simple_repeat 2 26 0 4297 179 44 32 chr4 28078344 28078485 -174249862 + MER21B LTR ERV1 714 852 -11 570 218 69 63 chr4 28078561 28078689 -174249658 + MER96 DNA MER1_type? 1 133 -42 4206 13 0 0 chr4 28078689 28079176 -174249171 + L1PA3 LINE L1 5682 6168 0 570 218 69 63 chr4 28079176 28079220 -174249127 + MER96 DNA MER1_type? 133 175 0 441 0 0 0 chr4 28079548 28079597 -174248750 + (TG)n Simple_repeat Simple_repeat 2 50 0 363 334 112 41 chr4 28079654 28079968 -174248379 - L2 LINE L2 -4 3268 2933 752 214 144 0 chr4 28080490 28080663 -174247684 + MIR SINE MIR 18 215 -47 362 212 0 0 chr4 28081332 28081398 -174246949 + MER5A DNA MER1_type 9 74 -115 2080 104 0 16 chr4 28081409 28081717 -174246630 + AluSq SINE Alu 11 313 0 753 185 8 0 chr4 28081735 28081855 -174246492 + AluSq/x SINE Alu 2 125 -187 246 32 0 0 chr4 28081855 28081886 -174246461 + (CATA)n Simple_repeat Simple_repeat 2 32 0 207 339 0 0 chr4 28081908 28081970 -174246377 + MER5A DNA MER1_type 128 189 0 2021 113 0 36 chr4 28082218 28082357 -174245990 + AluSg SINE Alu 1 143 -167 2306 74 0 0 chr4 28082357 28082654 -174245693 + AluY SINE Alu 1 297 -14 2021 113 0 36 chr4 28082654 28082823 -174245524 + AluSg SINE Alu 143 298 -12 232 227 80 0 chr4 28082869 28082944 -174245403 + L1MC4 LINE L1 6612 6692 -1350 6509 129 66 26 chr4 28083018 28083606 -174244741 - Tigger3b DNA MER2_type -1802 1226 663 1685 156 28 10 chr4 28083606 28083894 -174244453 - AluJo SINE Alu -19 293 1 6509 129 66 26 chr4 28083894 28084258 -174244089 - Tigger3b DNA MER2_type -2365 663 216 1851 141 105 3 chr4 28084258 28084564 -174243783 - MER1B DNA MER1_type 0 337 1 6509 129 66 26 chr4 28084564 28084789 -174243558 - Tigger3b DNA MER2_type -2812 216 1 382 230 152 36 chr4 28084867 28085032 -174243315 - HAL1 LINE L1 -186 2321 2138 278 288 0 0 chr4 28085029 28085109 -174243238 - HAL1 LINE L1 -1154 1353 1274 * 2250 139 10 21 chr4 28085645 28086010 -174242337 + MLT1A1 LTR MaLR 2 355 -9 2205 104 0 0 chr4 28086360 28086658 -174241689 + AluSc SINE Alu 1 298 -11 180 326 30 68 chr4 28086745 28086877 -174241470 - MIR SINE MIR -70 192 66 1157 146 19 29 chr4 28087510 28087715 -174240632 + MER20 DNA MER1_type 15 217 -2 322 347 91 40 chr4 28088485 28088883 -174239464 + L2 LINE L2 2844 3261 -11 240 143 0 0 chr4 28088904 28088946 -174239401 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 1477 264 36 36 chr4 28090311 28090810 -174237537 + L1ME3A LINE L1 5504 6002 -168 326 282 0 0 chr4 28090831 28090909 -174237438 + L1ME3A LINE L1 6082 6159 -11 1164 205 21 4 chr4 28091453 28091687 -174236660 + MER115 DNA AcHobo 445 682 -11 520 369 96 29 chr4 28091749 28092166 -174236181 - L3 LINE CR1 -789 788 344 219 214 0 0 chr4 28092177 28092219 -174236128 + CT-rich Low_complexity Low_complexity 2 43 0 976 208 35 44 chr4 28092381 28092607 -174235740 - MER58A DNA MER1_type 0 224 1 1683 169 13 29 chr4 28094223 28094536 -174233811 + AluJo SINE Alu 1 308 -4 313 315 8 23 chr4 28095745 28095875 -174232472 + MIR SINE MIR 13 140 -122 2299 103 0 0 chr4 28095884 28096233 -174232114 + AluSx SINE Alu 1 349 0 1278 169 1 109 chr4 28096235 28096398 -174231949 - MER58 DNA MER1_type -3 2417 2238 1740 156 69 9 chr4 28096398 28096744 -174231603 + L1MA9 LINE L1 5946 6312 0 1278 169 1 109 chr4 28096744 28096787 -174231560 - MER58 DNA MER1_type -182 2238 2192 767 161 0 0 chr4 28096787 28096905 -174231442 - FLAM_C SINE Alu -15 118 1 1278 169 1 109 chr4 28096905 28097122 -174231225 - MER58 DNA MER1_type -228 2192 3 204 250 111 28 chr4 28097485 28097557 -174230790 + L2 LINE L2 3235 3312 -1 665 268 105 0 chr4 28097709 28097899 -174230448 + MIR SINE MIR 47 256 -6 788 225 106 14 chr4 28097908 28097950 -174230397 - MIR SINE MIR -11 251 214 1579 165 0 81 chr4 28097950 28098272 -174230075 - AluJo SINE Alu -16 296 1 788 225 106 14 chr4 28098272 28098447 -174229900 - MIR SINE MIR -48 214 14 907 216 188 50 chr4 28099593 28099955 -174228392 + LTR16A1 LTR ERVL 43 454 -3 213 347 32 0 chr4 28099958 28100053 -174228294 + L2 LINE L2 2658 2755 -559 182 205 0 0 chr4 28100269 28100308 -174228039 + L2 LINE L2 3269 3307 -6 1338 256 43 47 chr4 28102033 28102521 -174225826 + MLT1H LTR MaLR 57 542 -7 1887 117 7 3 chr4 28102927 28103246 -174225101 + AluSq SINE Alu 1 320 0 1480 174 58 16 chr4 28103246 28103567 -174224780 - MLT2D LTR ERVL -7 390 16 1551 146 52 4 chr4 28103567 28103835 -174224512 - AluJo SINE Alu -10 302 22 1853 195 39 47 chr4 28103885 28104352 -174223995 + MLT1C LTR MaLR 3 465 -2 212 250 36 18 chr4 28104748 28104804 -174223543 + MIR SINE MIR 26 82 -180 368 259 99 61 chr4 28104876 28105007 -174223340 - MIR SINE MIR -118 144 9 2096 120 10 0 chr4 28105113 28105413 -174222934 + AluSx SINE Alu 1 303 -9 2269 166 63 14 chr4 28106341 28106786 -174221561 - MLT1C LTR MaLR 0 467 1 356 286 92 34 chr4 28106809 28106928 -174221419 + L2 LINE L2 3145 3270 -2 421 316 114 10 chr4 28106968 28107161 -174221186 + MIR SINE MIR 38 250 -12 2156 114 0 0 chr4 28107165 28107463 -174220884 - AluSx SINE Alu -14 298 1 1868 153 58 22 chr4 28107484 28107844 -174220503 + THE1C LTR MaLR 1 373 -2 433 309 89 44 chr4 28107971 28108356 -174219991 - MLT1K LTR MaLR -2 586 151 387 223 246 0 chr4 28109350 28109480 -174218867 - MIR SINE MIR -69 193 32 302 294 50 8 chr4 28109499 28109618 -174218729 - MIR SINE MIR -43 219 96 720 298 162 17 chr4 28110584 28110855 -174217492 - L2 LINE L2 -1 3312 3082 1903 142 192 0 chr4 28110855 28111214 -174217133 - MSTC LTR MaLR 0 428 1 720 298 162 17 chr4 28111214 28111409 -174216938 - L2 LINE L2 -231 3082 2760 351 0 0 0 chr4 28111437 28111476 -174216871 + (TG)n Simple_repeat Simple_repeat 1 39 0 1231 179 0 91 chr4 28111476 28111783 -174216564 - AluJo SINE Alu -33 279 1 1988 150 32 12 chr4 28112001 28112342 -174216005 - MER7A DNA MER2_type 0 346 1 3398 134 12 39 chr4 28112366 28112935 -174215412 - MLT2B3 LTR ERVL 0 554 1 27 29 0 0 chr4 28113304 28113338 -174215009 + AT_rich Low_complexity Low_complexity 1 34 0 1121 220 20 16 chr4 28114030 28114275 -174214072 + MLT1A2 LTR MaLR 1 246 -128 231 132 26 0 chr4 28114275 28114313 -174214034 - Tigger3(Golem) DNA MER2_type -189 2840 2802 * 620 199 13 45 chr4 28114292 28114478 -174213869 + MLT1A2 LTR MaLR 189 372 -2 483 321 165 14 chr4 28114517 28114729 -174213618 + MIR SINE MIR 19 262 0 2215 71 31 0 chr4 28114776 28115070 -174213277 + AluSg SINE Alu 1 303 -7 296 288 0 12 chr4 28115201 28115281 -174213066 + MLT1H1 LTR MaLR 1 79 -476 255 271 53 83 chr4 28116803 28116819 -174211528 - MIR SINE MIR -3 259 244 976 183 31 54 chr4 28116819 28117043 -174211304 + MER20 DNA MER1_type 1 219 0 255 271 53 83 chr4 28117043 28117159 -174211188 - MIR SINE MIR -18 244 131 325 194 0 45 chr4 28117195 28117262 -174211085 - L1MC4 LINE L1 -1339 6703 6640 815 217 90 0 chr4 28117273 28117439 -174210908 - MIR SINE MIR -58 204 24 342 329 91 52 chr4 28117873 28118180 -174210167 + L2 LINE L2 2952 3270 -2 271 323 20 0 chr4 28118382 28118481 -174209866 - L3 LINE CR1 -325 1252 1152 363 245 139 118 chr4 28118603 28118934 -174209413 - MER102b DNA MER1_type 0 341 4 186 282 16 97 chr4 28121167 28121291 -174207056 + L2 LINE L2 2081 2194 -1120 443 271 20 45 chr4 28121572 28121771 -174206576 - MER112 DNA MER1_type -1 259 66 1291 112 208 19 chr4 28121809 28122069 -174206278 - AluSg1 SINE Alu 0 309 1 325 250 0 0 chr4 28122136 28122200 -174206147 + L2 LINE L2 3248 3311 -2 21 0 0 0 chr4 28122682 28122703 -174205644 + AT_rich Low_complexity Low_complexity 1 21 0 573 250 62 50 chr4 28123293 28123517 -174204830 + MIR SINE MIR 16 246 -16 435 269 157 27 chr4 28123844 28124067 -174204280 + L1MC4a LINE L1 5683 5934 -1874 2086 123 3 3 chr4 28124276 28124584 -174203763 + AluSx SINE Alu 2 309 -3 546 261 22 22 chr4 28125428 28125566 -174202781 + MIR SINE MIR 103 240 -22 525 125 0 0 chr4 28125690 28125762 -174202585 + AluJ/FLAM SINE Alu 2 73 -239 652 299 62 38 chr4 28126667 28126709 -174201638 + L2 LINE L2 3016 3056 -257 2443 66 3 0 chr4 28126709 28127014 -174201333 - AluSc SINE Alu -3 306 1 652 299 62 38 chr4 28127014 28127262 -174201085 + L2 LINE L2 3056 3313 0 1704 122 91 0 chr4 28127720 28128006 -174200341 - AluSx SINE Alu 0 312 1 553 152 0 9 chr4 28128111 28128223 -174200124 - MER96B DNA MER1_type? -233 184 74 1897 201 92 25 chr4 28128224 28128657 -174199690 + MLT1C LTR MaLR 6 467 0 283 129 226 0 chr4 28128661 28128723 -174199624 - MER96B DNA MER1_type? -341 76 1 216 213 170 0 chr4 28129168 28129262 -174199085 - L3b LINE CR1 -323 1260 1151 25 31 0 0 chr4 28129335 28129367 -174198980 + AT_rich Low_complexity Low_complexity 1 32 0 258 204 41 0 chr4 28129368 28129417 -174198930 - MER5A DNA MER1_type -77 112 62 1703 150 17 10 chr4 28129417 28129717 -174198630 - AluSx SINE Alu 0 312 11 1903 140 3 0 chr4 28130022 28130315 -174198032 - AluSx SINE Alu -18 294 1 483 211 0 0 chr4 28130341 28130431 -174197916 - Tigger5 DNA MER2_type 0 2323 2234 234 273 0 18 chr4 28130438 28130493 -174197854 - Tigger5 DNA MER2_type -2268 55 2 198 0 0 0 chr4 28132584 28132606 -174195741 + (TAA)n Simple_repeat Simple_repeat 1 22 0 1966 91 29 0 chr4 28132617 28132893 -174195454 - AluSx SINE Alu -28 284 1 196 217 43 0 chr4 28132974 28133020 -174195327 + L2 LINE L2 3258 3305 -8 634 277 178 5 chr4 28136518 28136731 -174191616 - MIR SINE MIR 0 262 13 316 294 198 8 chr4 28136780 28136906 -174191441 - MIR SINE MIR 0 262 113 610 224 200 5 chr4 28136913 28137118 -174191229 - MIR SINE MIR 0 262 18 2092 102 0 17 chr4 28137439 28137734 -174190613 + AluSx SINE Alu 1 290 -22 253 182 55 18 chr4 28138917 28138972 -174189375 + MER117 DNA MER1_type 115 171 -26 204 283 0 0 chr4 28138999 28139045 -174189302 - MIR SINE MIR -68 140 95 * 478 282 69 0 chr4 28139030 28139161 -174189186 + L2 LINE L2 3174 3313 0 236 331 118 30 chr4 28139425 28139594 -174188753 - MIR3 SINE MIR -11 197 14 317 396 97 21 chr4 28140072 28140403 -174187944 + L3b LINE CR1 1113 1468 -115 478 313 125 7 chr4 28140404 28140685 -174187662 + L1MD3 LINE L1 5624 5937 -1871 359 290 0 61 chr4 28141158 28141289 -174187058 + MIR SINE MIR 98 220 -42 585 268 10 31 chr4 28141787 28141981 -174186366 - MER117 DNA MER1_type -6 191 2 234 240 7 130 chr4 28142025 28142096 -174186251 + L2 LINE L2 2918 2963 -309 2052 144 0 3 chr4 28142096 28142409 -174185938 - AluSx SINE Alu 0 312 1 234 240 7 130 chr4 28142409 28142483 -174185864 + L2 LINE L2 2963 3045 -227 187 226 38 19 chr4 28142486 28142539 -174185808 + L2 LINE L2 3219 3272 0 552 280 76 42 chr4 28142578 28142748 -174185599 + MIR SINE MIR 3 185 -77 1935 112 3 20 chr4 28142748 28143042 -174185305 + AluSx SINE Alu 1 289 -23 552 280 76 42 chr4 28143042 28143107 -174185240 + MIR SINE MIR 185 246 -16 273 279 0 15 chr4 28143171 28143239 -174185108 + L2 LINE L2 3206 3272 0 853 303 126 24 chr4 28143790 28144585 -174183762 - L2 LINE L2 0 3313 2430 657 241 93 12 chr4 28146093 28146308 -174182039 + L1MD3 LINE L1 6116 7978 -17 1663 158 0 4 chr4 28146317 28146582 -174181765 + AluJo SINE Alu 32 295 -17 460 262 37 48 chr4 28146979 28147166 -174181181 - MER5A DNA MER1_type -4 185 1 581 218 147 6 chr4 28147431 28147601 -174180746 - MIR SINE MIR -25 237 44 2311 89 0 13 chr4 28147702 28148016 -174180331 + AluSx SINE Alu 3 312 0 225 284 34 0 chr4 28148134 28148222 -174180125 + CT-rich Low_complexity Low_complexity 3 93 0 573 138 0 146 chr4 28149730 28149860 -174178487 + L1M3 LINE L1 5444 5554 -629 2200 178 95 6 chr4 28150833 28151305 -174177042 - Charlie1b DNA MER1_type 0 523 10 1594 187 6 19 chr4 28151675 28151990 -174176357 - AluJb SINE Alu -1 311 1 1621 226 118 48 chr4 28152275 28152623 -174175724 + L1ME3A LINE L1 5585 5986 -184 2156 103 3 3 chr4 28152623 28152924 -174175423 - AluSg SINE Alu -8 302 2 1621 226 118 48 chr4 28152924 28153115 -174175232 + L1ME3A LINE L1 5986 6162 -8 1621 186 3 22 chr4 28153149 28153467 -174174880 + AluJb SINE Alu 1 312 0 181 293 13 40 chr4 28153608 28153683 -174174664 + L2 LINE L2 3199 3271 -1 217 346 25 0 chr4 28153805 28153886 -174174461 + L2 LINE L2 3176 3258 -14 672 233 149 28 chr4 28154077 28154365 -174173982 + MER5C DNA MER1_type 1 323 -1 332 200 89 22 chr4 28155029 28155119 -174173228 - MLT1K LTR MaLR -8 580 485 252 191 111 0 chr4 28155256 28155319 -174173028 + L1ME LINE L1 5677 5746 -375 26 64 0 0 chr4 28155392 28155439 -174172908 + AT_rich Low_complexity Low_complexity 1 47 0 1995 121 7 13 chr4 28155621 28155928 -174172419 + AluSq SINE Alu 1 305 -8 519 17 0 0 chr4 28155928 28155988 -174172359 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 944 280 130 50 chr4 28156107 28156629 -174171718 + MLT1K LTR MaLR 18 581 -7 2249 155 31 10 chr4 28156632 28157020 -174171327 - MSTD LTR MaLR 0 396 1 195 69 0 0 chr4 28157533 28157562 -174170785 + (T)n Simple_repeat Simple_repeat 1 29 0 476 317 0 28 chr4 28158137 28158338 -174170009 + C-rich Low_complexity Low_complexity 1 195 0 844 211 61 33 chr4 28159369 28159549 -174168798 - MER5A DNA MER1_type -4 185 1 2203 98 0 7 chr4 28160834 28161141 -174167206 - AluSg SINE Alu -5 305 1 1961 146 3 0 chr4 28161332 28161633 -174166714 + AluJb SINE Alu 5 306 -6 284 271 68 120 chr4 28161907 28162173 -174166174 + L2 LINE L2 3021 3272 0 277 271 14 0 chr4 28162180 28162250 -174166097 + CT-rich Low_complexity Low_complexity 3 73 0 2080 105 10 7 chr4 28163477 28163782 -174164565 + AluSg SINE Alu 3 308 -2 526 308 81 32 chr4 28164287 28164472 -174163875 - MIR SINE MIR -66 196 3 285 289 100 61 chr4 28164569 28164749 -174163598 + MIR SINE MIR 14 200 -62 683 251 90 59 chr4 28165004 28165327 -174163020 + MLT1F LTR MaLR 210 542 0 389 319 48 43 chr4 28165496 28165684 -174162663 - L3b LINE CR1 -86 1497 1309 1214 201 54 125 chr4 28166521 28166650 -174161697 + MLT1C LTR MaLR 1 138 -329 1959 131 7 13 chr4 28166650 28166955 -174161392 + AluSx SINE Alu 1 303 -9 1214 201 54 125 chr4 28166955 28167015 -174161332 + MLT1C LTR MaLR 138 201 -266 2048 127 10 0 chr4 28167015 28167323 -174161024 + AluSx SINE Alu 1 311 -1 1214 201 54 125 chr4 28167323 28167635 -174160712 + MLT1C LTR MaLR 201 467 0 218 350 31 0 chr4 28167885 28167982 -174160365 - MIR3 SINE MIR -2 206 107 24 32 0 0 chr4 28169560 28169591 -174158756 + AT_rich Low_complexity Low_complexity 1 31 0 809 172 80 18 chr4 28170585 28170748 -174157599 - FRAM SINE Alu -4 172 1 198 0 0 0 chr4 28170754 28170776 -174157571 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 381 236 107 29 chr4 28170955 28171095 -174157252 - HAL1 LINE L1 -1345 1162 1012 517 304 53 31 chr4 28171285 28171512 -174156835 - HAL1 LINE L1 -1915 592 361 1774 223 49 29 chr4 28172104 28172127 -174156220 - MLT1C LTR MaLR 0 467 446 1989 107 35 98 chr4 28172127 28172493 -174155854 + MER61A LTR ERV1 1 343 0 1774 223 49 29 chr4 28172493 28172922 -174155425 - MLT1C LTR MaLR -21 446 6 2334 84 0 0 chr4 28173077 28173375 -174154972 - AluSg SINE Alu -12 298 1 262 214 18 36 chr4 28173430 28173486 -174154861 + L2 LINE L2 3201 3255 -17 307 303 24 79 chr4 28173679 28173933 -174154414 + L2 LINE L2 2853 3092 -180 749 128 0 26 chr4 28174241 28174358 -174153989 + FLAM_C SINE Alu 19 132 -11 1442 248 49 27 chr4 28174710 28175117 -174153230 + LTR16C LTR ERVL 74 489 -2 1837 81 24 0 chr4 28175217 28175464 -174152883 + AluSx SINE Alu 1 253 -59 489 247 147 17 chr4 28176302 28176411 -174151936 - L1ME4a LINE L1 -31 6090 5997 255 61 0 0 chr4 28176411 28176444 -174151903 + (TG)n Simple_repeat Simple_repeat 2 34 0 489 247 147 17 chr4 28176444 28176565 -174151782 - L1ME4a LINE L1 -124 5997 5830 222 361 72 0 chr4 28176887 28177067 -174151280 - MIR3 SINE MIR -9 199 7 800 211 23 0 chr4 28178775 28178946 -174149401 - MER45A DNA AcHobo -1 177 3 598 295 14 17 chr4 28179069 28179330 -174149017 - MIR SINE MIR 0 262 45 306 320 145 13 chr4 28179550 28179778 -174148569 - MIR SINE MIR -1 261 4 181 286 0 0 chr4 28179782 28179824 -174148523 + L3 LINE CR1 1533 1574 -3 1421 234 35 9 chr4 28180441 28180670 -174147677 - MLT1C LTR MaLR -43 424 182 1777 158 23 0 chr4 28180670 28180974 -174147373 - AluJo SINE Alu -1 311 1 1421 234 35 9 chr4 28180974 28181090 -174147257 - MLT1C LTR MaLR -285 182 70 631 261 208 45 chr4 28181090 28181576 -174146771 - MER34B LTR ERV1 0 565 1 647 187 110 87 chr4 28181702 28181921 -174146426 - MIR SINE MIR -11 251 28 7823 87 7 19 chr4 28182167 28183250 -174145097 + MER11C LTR ERVK 3 1071 0 735 291 141 6 chr4 28183313 28183633 -174144714 + L2 LINE L2 2951 3313 0 213 243 0 0 chr4 28183696 28183733 -174144614 + L2 LINE L2 3183 3219 -94 236 267 19 27 chr4 28184687 28184790 -174143557 + MIR SINE MIR 16 114 -94 615 125 0 31 chr4 28184979 28185075 -174143272 - MER8 DNA MER2_type 0 239 147 1570 119 16 4 chr4 28185076 28185327 -174143020 + AluSx SINE Alu 1 254 -58 1100 165 0 30 chr4 28186121 28186321 -174142026 + AluJo SINE Alu 85 278 -34 180 0 0 0 chr4 28186321 28186341 -174142006 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 370 253 79 105 chr4 28186436 28186626 -174141721 + MLT1L LTR MaLR 22 206 -409 23 0 0 0 chr4 28186824 28186847 -174141500 + AT_rich Low_complexity Low_complexity 1 23 0 2152 99 0 0 chr4 28186850 28187142 -174141205 - AluSx SINE Alu -20 292 1 615 125 0 31 chr4 28187143 28187239 -174141108 + MER8 DNA MER2_type 147 239 0 236 267 19 27 chr4 28187429 28187532 -174140815 - MIR SINE MIR -94 114 16 435 303 20 25 chr4 28187829 28188056 -174140291 + CT-rich Low_complexity Low_complexity 1 225 0 2409 43 3 17 chr4 28188406 28188707 -174139640 - AluY SINE Alu -14 297 1 62 0 0 0 chr4 28188714 28188776 -174139571 + AT_rich Low_complexity Low_complexity 1 62 0 673 244 19 12 chr4 28188789 28188949 -174139398 - MER8 DNA MER2_type -78 161 1 226 167 67 17 chr4 28189118 28189178 -174139169 + LTR37B LTR ERV1 1 63 -405 256 95 0 0 chr4 28189183 28189225 -174139122 - L1MA7 LINE L1 -1 6290 6249 719 199 8 0 chr4 28189239 28189370 -174138977 - FLAM_A SINE Alu -1 132 1 913 198 142 81 chr4 28189397 28189792 -174138555 + LTR37B LTR ERV1 48 466 -2 1242 203 44 15 chr4 28189863 28190134 -174138213 - AluJo SINE Alu -22 290 12 556 252 87 0 chr4 28190166 28190293 -174138054 - MIR SINE MIR -35 227 90 295 228 38 13 chr4 28190323 28190402 -174137945 - MIR SINE MIR -64 198 118 1187 289 12 56 chr4 28190628 28191126 -174137221 + MLT1J LTR MaLR 36 511 0 609 298 132 10 chr4 28191803 28192008 -174136339 + MIR SINE MIR 33 262 0 391 199 47 170 chr4 28192018 28192093 -174136254 - MIR SINE MIR 0 262 218 1958 119 11 0 chr4 28192093 28192379 -174135968 - AluSx SINE Alu -23 289 1 391 199 47 170 chr4 28192379 28192474 -174135873 - MIR SINE MIR -44 218 113 815 218 78 22 chr4 28192482 28192661 -174135686 - MSTD LTR MaLR 0 396 208 1993 119 3 17 chr4 28193070 28193372 -174134975 - AluSx SINE Alu -14 298 1 302 318 11 0 chr4 28193497 28193585 -174134762 - MIR SINE MIR -13 249 161 1960 129 90 31 chr4 28193595 28193952 -174134395 - MLT1B LTR MaLR -12 378 1 550 231 41 8 chr4 28193956 28194077 -174134270 - MIR SINE MIR -103 159 35 1560 103 65 0 chr4 28194077 28194309 -174134038 + AluSx SINE Alu 43 289 -23 254 324 29 9 chr4 28194381 28194486 -174133861 - MIR SINE MIR -72 136 30 620 276 62 58 chr4 28194799 28194852 -174133495 - MIR SINE MIR 0 262 211 2103 114 7 0 chr4 28194852 28195150 -174133197 - AluSx SINE Alu -12 300 1 620 276 62 58 chr4 28195150 28195321 -174133026 - MIR SINE MIR -51 211 37 616 264 111 0 chr4 28195866 28196082 -174132265 + L2 LINE L2 2733 2972 -342 198 93 0 116 chr4 28196126 28196169 -174132178 + L2 LINE L2 3235 3272 0 1937 111 0 3 chr4 28197949 28198237 -174130110 - AluSx SINE Alu -25 287 1 198 0 0 0 chr4 28198385 28198407 -174129940 + (CA)n Simple_repeat Simple_repeat 1 22 0 1399 162 45 42 chr4 28198490 28198799 -174129548 + AluJo SINE Alu 1 310 -2 184 358 12 12 chr4 28198830 28198911 -174129436 - MIR SINE MIR -111 97 17 1329 247 93 21 chr4 28198948 28199434 -174128913 - LTR33A LTR ERVL -2 521 1 1972 78 3 71 chr4 28199496 28199830 -174128517 + AluSp SINE Alu 1 313 0 267 103 0 0 chr4 28199834 28199873 -174128474 + (TG)n Simple_repeat Simple_repeat 1 39 0 498 313 86 15 chr4 28199893 28200091 -174128256 + MIR SINE MIR 34 245 -17 240 227 45 73 chr4 28200098 28200208 -174128139 - L1ME LINE L1 -300 5870 5764 292 277 209 14 chr4 28200463 28200611 -174127736 - MIR SINE MIR -49 213 37 180 357 30 60 chr4 28201131 28201431 -174126916 + L2 LINE L2 2686 2976 -338 2020 133 3 0 chr4 28201565 28201865 -174126482 - AluSx SINE Alu -11 301 1 643 138 0 0 chr4 28201865 28201959 -174126388 - AluJ/FLAM SINE Alu -216 96 3 1478 228 18 73 chr4 28202056 28202261 -174126086 - MLT1C LTR MaLR 0 467 299 2212 98 3 0 chr4 28202261 28202556 -174125791 - AluSp SINE Alu -17 296 1 1478 228 18 73 chr4 28202556 28202801 -174125546 - MLT1C LTR MaLR -168 299 42 860 268 61 0 chr4 28203351 28203564 -174124783 + LTR16A LTR ERVL 57 282 -168 1837 157 26 50 chr4 28203596 28203748 -174124599 + MLT1B LTR MaLR 23 177 -213 2177 88 26 3 chr4 28203748 28204053 -174124294 + AluSp SINE Alu 1 312 -1 1837 157 26 50 chr4 28204053 28204150 -174124197 + MLT1B LTR MaLR 177 275 -115 2165 114 0 13 chr4 28204150 28204465 -174123882 + AluSx SINE Alu 1 311 -1 1837 157 26 50 chr4 28204465 28204591 -174123756 + MLT1B LTR MaLR 275 390 0 440 267 56 0 chr4 28204594 28204755 -174123592 + LTR16A LTR ERVL 276 445 -5 2032 183 27 36 chr4 28205628 28205855 -174122492 - L1MB3 LINE L1 -8 6175 5952 2025 116 18 0 chr4 28205855 28206139 -174122208 - AluSq SINE Alu -22 291 3 2032 183 27 36 chr4 28206139 28206360 -174121987 - L1MB3 LINE L1 -231 5952 5731 479 313 56 0 chr4 28206401 28206596 -174121751 - MIR SINE MIR -41 221 16 524 189 60 153 chr4 28206597 28206995 -174121352 + L1MC5 LINE L1 7377 7722 -239 1957 123 3 20 chr4 28206995 28207296 -174121051 + AluSx SINE Alu 1 296 -16 524 189 60 153 chr4 28207296 28207393 -174120954 + L1MC5 LINE L1 7722 7826 -135 2035 121 3 7 chr4 28207398 28207703 -174120644 + AluSx SINE Alu 1 304 -8 1022 216 56 42 chr4 28207726 28208153 -174120194 + L1MC5 LINE L1 7494 7926 -35 320 273 45 45 chr4 28208185 28208317 -174120030 - MIR SINE MIR -118 144 13 620 318 41 34 chr4 28208350 28208617 -174119730 + MLT1K LTR MaLR 44 312 -276 416 134 0 15 chr4 28208662 28208729 -174119618 - MIR SINE MIR -101 161 96 376 299 147 43 chr4 28208734 28208965 -174119382 + MLT1K LTR MaLR 327 581 -7 348 269 97 28 chr4 28209024 28209169 -174119178 - MIR SINE MIR -6 256 102 816 281 87 8 chr4 28209245 28209487 -174118860 - MIR SINE MIR 0 262 2 626 226 65 45 chr4 28210280 28210479 -174117868 + MLT1K LTR MaLR 385 587 -1 333 259 83 139 chr4 28211106 28211565 -174116782 + MLT1K LTR MaLR 156 588 0 2357 86 0 0 chr4 28211656 28211960 -174116387 + AluSx SINE Alu 1 304 -8 268 136 15 91 chr4 28213572 28213638 -174114709 - MLT2B3 LTR ERVL -2 552 458 189 0 0 0 chr4 28213638 28213659 -174114688 + (TAGA)n Simple_repeat Simple_repeat 1 21 0 364 286 67 82 chr4 28213659 28214001 -174114346 + L1MEd LINE L1 845 1181 -4938 417 179 20 20 chr4 28214008 28214159 -174114188 + (TAGA)n Simple_repeat Simple_repeat 3 153 0 2000 191 12 11 chr4 28214162 28214542 -174113805 - MLT2D LTR ERVL -20 534 8 344 270 195 45 chr4 28214570 28214770 -174113577 - MIR SINE MIR -20 242 13 258 351 65 7 chr4 28214872 28215026 -174113321 + L2 LINE L2 1749 1911 -1403 229 283 50 68 chr4 28215878 28215928 -174112419 + L1MEd LINE L1 1254 1303 -5227 1599 82 0 32 chr4 28215928 28216148 -174112199 - AluY SINE Alu -13 298 86 229 283 50 68 chr4 28216148 28216173 -174112174 + L1MEd LINE L1 1303 1327 -5203 2028 141 3 3 chr4 28216173 28216486 -174111861 + AluSp SINE Alu 1 313 0 229 283 50 68 chr4 28216486 28216808 -174111539 + L1MEd LINE L1 1327 1645 -4885 326 261 35 70 chr4 28216817 28216851 -174111496 + L1MEd LINE L1 1741 1775 -4946 1192 40 0 14 chr4 28216851 28216999 -174111348 - L1PA5 LINE L1 -4 6150 6005 326 261 35 70 chr4 28216999 28217106 -174111241 + L1MEd LINE L1 1775 1877 -4844 981 277 40 8 chr4 28217109 28217362 -174110985 - MIR SINE MIR 0 262 2 231 275 0 0 chr4 28217372 28217441 -174110906 + HAL1 LINE L1 1538 1606 -901 22 0 0 0 chr4 28217613 28217635 -174110712 + AT_rich Low_complexity Low_complexity 1 22 0 2157 97 0 57 chr4 28217658 28217989 -174110358 - AluSx SINE Alu 0 312 1 526 266 126 33 chr4 28218178 28219047 -174109300 + L1MEd LINE L1 2442 3401 -3139 499 271 70 73 chr4 28219289 28219603 -174108744 + L1MEd LINE L1 4423 4735 -1805 189 0 0 0 chr4 28219733 28219754 -174108593 + (TC)n Simple_repeat Simple_repeat 2 22 0 349 300 107 29 chr4 28219921 28220061 -174108286 + L2 LINE L2 3122 3272 0 946 169 18 0 chr4 28220433 28220599 -174107748 - AluJ SINE Alu -13 299 131 396 243 0 0 chr4 28220601 28220712 -174107635 + (TA)n Simple_repeat Simple_repeat 2 112 0 685 124 25 58 chr4 28220712 28220833 -174107514 - AluJ SINE Alu -190 122 6 210 315 81 34 chr4 28220996 28221145 -174107202 + L2 LINE L2 2932 3087 -185 263 254 32 0 chr4 28221298 28221361 -174106986 + MLT1K LTR MaLR 157 221 -367 351 282 126 24 chr4 28221448 28221654 -174106693 + MLT1K LTR MaLR 359 585 -3 360 0 0 0 chr4 28221996 28222036 -174106311 + (TG)n Simple_repeat Simple_repeat 2 41 0 247 345 56 25 chr4 28222468 28222665 -174105682 + L2 LINE L2 2882 3084 -188 297 309 40 47 chr4 28222822 28222971 -174105376 + MER5A DNA MER1_type 1 148 -41 * 362 236 32 71 chr4 28222846 28223016 -174105331 - MER5B DNA MER1_type -16 173 9 845 283 55 0 chr4 28223174 28223393 -174104954 + MIR SINE MIR 5 235 -27 443 282 173 0 chr4 28225594 28225750 -174102597 - MER5A DNA MER1_type 0 189 7 1921 176 32 19 chr4 28226086 28226455 -174101892 + MLT1A2 LTR MaLR 1 374 0 260 255 57 66 chr4 28226743 28226849 -174101498 - L3 LINE CR1 -287 1290 1186 758 183 71 24 chr4 28226882 28227051 -174101296 - MER5B DNA MER1_type 0 178 2 238 329 24 12 chr4 28227237 28227319 -174101028 + MIR SINE MIR 63 145 -63 602 219 178 56 chr4 28227329 28227373 -174100974 - MLT1H LTR MaLR -6 543 506 2283 116 48 20 chr4 28227373 28227727 -174100620 - THE1B LTR MaLR 0 364 1 602 219 178 56 chr4 28227727 28227969 -174100378 - MLT1H LTR MaLR -43 506 222 1594 195 98 30 chr4 28228022 28228483 -174099864 - LTR48B LTR ERV1 -2 642 151 315 323 0 0 chr4 28228488 28228584 -174099763 - MER34 LTR ERV1 -446 96 1 369 305 93 13 chr4 28228679 28228830 -174099517 - L2 LINE L2 0 3272 3110 446 81 0 0 chr4 28229466 28229528 -174098819 - Alu SINE Alu -11 301 240 2327 158 35 5 chr4 28229529 28229876 -174098471 + MER41B LTR ERV1 218 580 -55 1760 141 30 3 chr4 28229876 28230173 -174098174 - AluSx SINE Alu -7 305 1 2327 158 35 5 chr4 28230173 28230231 -174098116 + MER41B LTR ERV1 580 635 0 213 39 0 0 chr4 28230817 28230843 -174097504 + (TG)n Simple_repeat Simple_repeat 1 26 0 734 229 78 33 chr4 28230843 28231254 -174097093 - MLT1K LTR MaLR -12 576 100 357 204 169 38 chr4 28233154 28233382 -174094965 - LTR16C LTR ERVL -24 467 158 276 30 0 0 chr4 28233968 28234001 -174094346 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1737 148 0 3 chr4 28234001 28234284 -174094063 - AluJo SINE Alu -30 282 1 684 167 83 5 chr4 28234294 28234486 -174093861 - MER69B DNA AcHobo -16 1210 1004 2219 254 84 33 chr4 28234498 28235223 -174093124 + MER69B DNA AcHobo 207 968 -258 242 158 0 0 chr4 28235233 28235271 -174093076 + L1MD3 LINE L1 7730 7767 -228 820 250 56 49 chr4 28235393 28235677 -174092670 + MLT1J LTR MaLR 224 509 -2 463 278 204 21 chr4 28236024 28236215 -174092132 + MIR SINE MIR 37 262 0 394 310 121 55 chr4 28236343 28236723 -174091624 - L2 LINE L2 -920 2394 1961 1621 138 0 50 chr4 28236723 28237021 -174091326 + AluJb SINE Alu 13 295 -17 394 310 121 55 chr4 28237021 28237221 -174091126 - L2 LINE L2 -1353 1961 1776 208 189 0 38 chr4 28237254 28237307 -174091040 + GA-rich Low_complexity Low_complexity 4 54 0 2000 112 0 17 chr4 28240524 28240820 -174087527 + AluSx SINE Alu 2 292 -20 300 328 9 17 chr4 28240901 28241017 -174087330 + MIR3 SINE MIR 89 203 -5 232 307 59 30 chr4 28241099 28241200 -174087147 + MIR SINE MIR 12 115 -147 263 305 43 105 chr4 28241222 28241432 -174086915 - L2 LINE L2 -1 3271 3075 700 222 122 71 chr4 28242843 28243154 -174085193 - MLT1H LTR MaLR -6 543 217 253 162 15 73 chr4 28243296 28243364 -174084983 - MLT1H LTR MaLR -459 83 20 859 293 79 38 chr4 28243798 28244190 -174084157 - LTR33A LTR ERVL -114 409 2 206 261 0 0 chr4 28244788 28244834 -174083513 + (CATA)n Simple_repeat Simple_repeat 1 46 0 333 353 75 6 chr4 28244937 28245110 -174083237 - MIR SINE MIR -66 196 12 355 241 149 0 chr4 28245855 28245942 -174082405 + L2 LINE L2 3213 3312 -1 24 32 0 0 chr4 28246046 28246077 -174082270 + AT_rich Low_complexity Low_complexity 1 31 0 1313 244 132 28 chr4 28246369 28246428 -174081919 + L2 LINE L2 1619 1670 -1644 2218 76 0 20 chr4 28246428 28246732 -174081615 - AluSg1 SINE Alu -11 298 1 1313 244 132 28 chr4 28246732 28247171 -174081176 + L2 LINE L2 1670 2169 -1145 682 171 9 0 chr4 28247210 28247321 -174081026 + FRAM SINE Alu 54 165 -11 215 146 24 0 chr4 28247707 28247748 -174080599 + CT-rich Low_complexity Low_complexity 2 43 0 268 313 107 27 chr4 28247759 28247871 -174080476 - L2 LINE L2 -50 3222 3102 211 333 42 0 chr4 28247848 28247944 -174080403 - L2 LINE L2 -470 2844 2745 * 212 0 36 0 chr4 28249892 28249920 -174078427 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2749 162 32 0 chr4 28250019 28250519 -174077828 + L1MB3 LINE L1 5661 6176 -7 1946 151 0 0 chr4 28250871 28251183 -174077164 + AluJb SINE Alu 1 312 0 579 248 29 15 chr4 28251738 28251947 -174076400 + L1MA10 LINE L1 5963 6334 0 1811 156 0 28 chr4 28252057 28252377 -174075970 - AluJb SINE Alu -1 311 1 1013 182 223 31 chr4 28252511 28252735 -174075612 - L1ME1 LINE L1 -12 6154 5860 1280 171 9 0 chr4 28252735 28252952 -174075395 - MER20 DNA MER1_type 0 219 1 1013 182 223 31 chr4 28252952 28253018 -174075329 - L1ME1 LINE L1 -306 5860 5808 2161 114 62 28 chr4 28253360 28253712 -174074635 + THE1B LTR MaLR 1 364 0 1297 250 165 56 chr4 28254661 28255399 -174072948 - L2 LINE L2 -4 3309 2456 2379 69 13 0 chr4 28255399 28255704 -174072643 + AluY SINE Alu 1 309 -2 1297 250 165 56 chr4 28255704 28255819 -174072528 - L2 LINE L2 -857 2456 2355 269 249 7 74 chr4 28255850 28255983 -174072364 - AluJ/FRAM SINE Alu -11 291 227 1393 181 54 4 chr4 28256220 28256479 -174071868 - AluJo SINE Alu -27 285 14 524 291 6 18 chr4 28256594 28256759 -174071588 - L2 LINE L2 -317 2996 2834 1529 233 104 64 chr4 28256792 28256887 -174071460 - L2 LINE L2 -958 2356 2266 1968 142 30 0 chr4 28256887 28257190 -174071157 + AluJo SINE Alu 1 312 0 1529 233 104 64 chr4 28257190 28257785 -174070562 - L2 LINE L2 -1048 2266 1638 272 286 0 0 chr4 28260093 28260156 -174068191 - MIR SINE MIR -107 155 93 2486 64 0 0 chr4 28261206 28261517 -174066830 + AluY SINE Alu 1 311 0 407 252 102 118 chr4 28261545 28261791 -174066556 - MIR SINE MIR 0 262 21 313 315 241 5 chr4 28261841 28262044 -174066303 + MIR SINE MIR 1 251 -11 226 217 19 0 chr4 28262166 28262218 -174066129 + MIR SINE MIR 104 155 -58 213 132 0 0 chr4 28262941 28262979 -174065368 + (GA)n Simple_repeat Simple_repeat 1 38 0 299 213 12 25 chr4 28263091 28263171 -174065176 + MLT1L LTR MaLR 6 84 -531 913 230 175 49 chr4 28263191 28263696 -174064651 + MLT2F LTR ERVL 3 660 -3 786 261 182 8 chr4 28263708 28264065 -174064282 + MLT1L LTR MaLR 118 536 -79 2702 165 50 42 chr4 28264071 28264220 -174064127 - MER44D DNA MER2_type -1882 605 459 2193 131 34 22 chr4 28264220 28264578 -174063769 + THE1B LTR MaLR 1 362 -2 2702 165 50 42 chr4 28264578 28264974 -174063373 - MER44D DNA MER2_type -2028 459 1 289 194 16 16 chr4 28264976 28265038 -174063309 + MLT1L LTR MaLR 544 605 -10 286 244 276 6 chr4 28265387 28265543 -174062804 + LTR50 LTR ERVL 17 214 -581 270 171 122 0 chr4 28265921 28266003 -174062344 + LTR33A LTR ERVL 417 508 -15 368 308 65 72 chr4 28266022 28266118 -174062229 - MLT1K LTR MaLR -71 517 422 1633 171 0 59 chr4 28266118 28266300 -174062047 - AluJo SINE Alu -10 302 146 2041 142 0 13 chr4 28266300 28266603 -174061744 - AluSx SINE Alu -13 299 1 1633 171 0 59 chr4 28266603 28266741 -174061606 - AluJo SINE Alu -166 146 1 368 308 65 72 chr4 28266741 28267047 -174061300 - MLT1K LTR MaLR -166 422 118 1405 151 14 5 chr4 28267223 28267442 -174060905 - MSTB LTR MaLR -4 422 202 1936 146 17 14 chr4 28267501 28267815 -174060532 - AluSx SINE Alu 0 312 1 1118 276 50 31 chr4 28268908 28269300 -174059047 - LTR16C LTR ERVL 0 491 87 1768 171 16 68 chr4 28269300 28269685 -174058662 + MLT1A1 LTR MaLR 1 365 0 1118 276 50 31 chr4 28269685 28269773 -174058574 - LTR16C LTR ERVL -404 87 2 332 238 76 52 chr4 28270681 28270853 -174057494 - MIR SINE MIR -75 187 12 358 267 85 23 chr4 28271329 28271505 -174056842 - MIR3 SINE MIR -17 191 5 279 150 0 0 chr4 28271523 28271583 -174056764 + (TG)n Simple_repeat Simple_repeat 2 61 0 2155 116 7 3 chr4 28272047 28272341 -174056006 + AluSx SINE Alu 1 295 -17 549 196 162 17 chr4 28272345 28272524 -174055823 + MLT1K LTR MaLR 261 465 -123 4273 126 172 97 chr4 28272526 28273957 -174054390 - pTR5 LTR ERV1 0 2438 743 977 197 10 15 chr4 28274045 28274248 -174054099 + MIR SINE MIR 37 238 -24 1108 260 25 1 chr4 28274284 28274582 -174053765 - MLT1I LTR MaLR -24 385 41 25 0 0 0 chr4 28274684 28274709 -174053638 + AT_rich Low_complexity Low_complexity 1 25 0 1552 170 21 35 chr4 28274709 28274997 -174053350 - AluJo SINE Alu -24 288 5 1354 201 33 41 chr4 28275301 28275669 -174052678 - LTR16A1 LTR ERVL -91 366 2 556 267 134 43 chr4 28276330 28276562 -174051785 - MIR SINE MIR 0 262 10 251 226 0 0 chr4 28276635 28276688 -174051659 + MLT1J1 LTR MaLR 3 55 -391 2164 120 13 3 chr4 28276912 28277220 -174051127 - AluSq SINE Alu -2 311 1 559 344 13 13 chr4 28278066 28278296 -174050051 + MIR SINE MIR 21 250 -12 357 274 34 51 chr4 28279389 28279506 -174048841 + L2 LINE L2 3126 3240 -32 2393 77 20 3 chr4 28279537 28279836 -174048511 - AluSp SINE Alu -9 304 1 3608 176 52 54 chr4 28280847 28281719 -174046628 + L1MC4 LINE L1 7168 8037 -5 1976 113 8 0 chr4 28281728 28281984 -174046363 + AluSx SINE Alu 1 258 -54 249 33 0 0 chr4 28281988 28282018 -174046329 + (TAA)n Simple_repeat Simple_repeat 1 30 0 189 296 34 34 chr4 28282024 28282112 -174046235 + MIR SINE MIR 35 122 -86 183 204 23 0 chr4 28282350 28282394 -174045953 - MIR SINE MIR -5 257 213 2060 144 0 0 chr4 28282747 28283052 -174045295 + AluSx SINE Alu 1 305 -7 180 305 12 49 chr4 28283434 28283516 -174044831 - MIR SINE MIR -135 127 49 237 291 184 21 chr4 28283874 28284015 -174044332 + MIR SINE MIR 20 183 -79 251 241 0 0 chr4 28285698 28285756 -174042591 - MIR SINE MIR -69 139 82 183 80 0 0 chr4 28287181 28287206 -174041141 + (A)n Simple_repeat Simple_repeat 1 25 0 423 257 35 0 chr4 28287826 28287939 -174040408 - MER117 DNA MER1_type -74 123 7 355 257 64 36 chr4 28288304 28288444 -174039903 + MIR SINE MIR 113 256 -6 973 169 22 0 chr4 28288536 28288719 -174039628 + MER53 DNA DNA 1 187 -2 551 257 46 46 chr4 28288810 28289028 -174039319 + MER112 DNA MER1_type 4 221 -39 1230 206 20 19 chr4 28289034 28289123 -174039224 + MER58B DNA MER1_type 2 89 -2331 1753 180 23 3 chr4 28289123 28289429 -174038918 + AluSx SINE Alu 1 312 0 1230 206 20 19 chr4 28289429 28289722 -174038625 + MER58B DNA MER1_type 89 340 -1 766 212 145 6 chr4 28290466 28290645 -174037702 + MER58A DNA MER1_type 21 224 0 300 300 45 9 chr4 28291703 28291813 -174036534 + MIR SINE MIR 40 153 -55 514 260 6 44 chr4 28291901 28292082 -174036265 + L1ME LINE L1 5502 5675 -446 275 359 11 27 chr4 28292255 28292439 -174035908 - MIR SINE MIR -16 246 66 1419 206 80 58 chr4 28293860 28294312 -174034035 - MLT1C LTR MaLR 0 467 6 182 358 17 17 chr4 28294570 28294690 -174033657 + L2 LINE L2 2583 2702 -612 1620 186 64 59 chr4 28294948 28295404 -174032943 + MLT1C LTR MaLR 6 463 -4 401 325 45 0 chr4 28295420 28295577 -174032770 + MER91A DNA MER1_type 1 164 -32 262 196 0 0 chr4 28295801 28295852 -174032495 + L2 LINE L2 3261 3311 -2 277 184 26 26 chr4 28296921 28296997 -174031350 + MIR SINE MIR 71 146 -116 1982 107 0 52 chr4 28297010 28297300 -174031047 - AluSx SINE Alu -37 275 1 1930 176 19 3 chr4 28298525 28298884 -174029463 + MER47A DNA MER2_type 2 366 0 271 202 45 45 chr4 28298957 28299046 -174029301 - MIR SINE MIR -29 233 145 562 313 22 31 chr4 28299133 28299360 -174028987 - MIR SINE MIR -33 229 5 369 211 137 48 chr4 28299407 28299538 -174028809 - MER57B LTR ERV1 -243 160 42 4042 91 23 0 chr4 28300565 28301126 -174027221 - L1PB2 LINE L1 -4 6147 5574 2015 132 6 26 chr4 28301325 28301636 -174026711 - AluSx SINE Alu -7 305 1 440 293 98 32 chr4 28301915 28302131 -174026216 + MLT1G1 LTR MaLR 83 333 -262 1813 153 13 13 chr4 28302131 28302431 -174025916 + AluJb SINE Alu 9 308 -4 440 293 98 32 chr4 28302431 28302493 -174025854 + MLT1G1 LTR MaLR 333 389 -206 276 172 149 23 chr4 28302563 28302650 -174025697 + MLT1G1 LTR MaLR 498 595 0 219 287 125 37 chr4 28303354 28303490 -174024857 + MIR3 SINE MIR 50 197 -11 4279 137 34 4 chr4 28304064 28304781 -174023566 - L1PB4 LINE L1 -7 6149 5412 558 241 30 30 chr4 28304903 28305036 -174023311 + FLAM_A SINE Alu 1 133 0 189 107 0 0 chr4 28305036 28305064 -174023283 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 300 107 0 67 chr4 28305061 28305136 -174023211 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 730 246 8 90 chr4 28305574 28305830 -174022517 + MIR SINE MIR 7 241 -21 186 43 0 0 chr4 28305868 28305891 -174022456 + (T)n Simple_repeat Simple_repeat 1 23 0 764 303 75 52 chr4 28306102 28306663 -174021684 - L2 LINE L2 -1 3312 2720 203 237 0 51 chr4 28306687 28306746 -174021601 - L2 LINE L2 -15 3257 3202 308 314 76 22 chr4 28306774 28306997 -174021350 - L2 LINE L2 -616 2698 2464 1674 199 28 20 chr4 28306999 28307061 -174021286 + L1M4 LINE L1 903 963 -5579 2399 101 52 3 chr4 28307061 28307408 -174020939 - THE1B LTR MaLR 0 364 1 1674 199 28 20 chr4 28307408 28307741 -174020606 + L1M4 LINE L1 963 1301 -5241 2085 205 80 21 chr4 28307939 28308412 -174019935 - MLT1F1 LTR MaLR 0 567 67 2382 173 33 69 chr4 28309228 28309767 -174018580 + MLT2B1 LTR ERVL 1 520 0 227 341 8 16 chr4 28310376 28310505 -174017842 - L2 LINE L2 -2 3311 3184 304 310 67 50 chr4 28310549 28310788 -174017559 + L2 LINE L2 3003 3245 -68 198 288 34 0 chr4 28312131 28312190 -174016157 - MIR SINE MIR -73 189 129 1174 165 0 30 chr4 28312476 28312676 -174015671 + AluJo SINE Alu 85 278 -34 180 0 0 0 chr4 28312676 28312696 -174015651 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 363 253 79 105 chr4 28312791 28312981 -174015366 + MLT1L LTR MaLR 22 206 -409 1023 277 60 46 chr4 28313216 28313718 -174014629 + MLT1J LTR MaLR 3 511 0 282 231 0 15 chr4 28313771 28313836 -174014511 + MLT1L LTR MaLR 552 615 0 34 24 0 0 chr4 28314536 28314577 -174013770 + AT_rich Low_complexity Low_complexity 1 41 0 2042 156 0 0 chr4 28317026 28317321 -174011026 + AluSx SINE Alu 3 297 -15 588 261 96 10 chr4 28317900 28318099 -174010248 + MIR SINE MIR 33 248 -14 356 336 41 36 chr4 28318173 28318375 -174009972 + MIR SINE MIR 21 221 -27 2173 129 7 0 chr4 28318512 28318814 -174009533 - AluSx SINE Alu -8 304 1 381 22 0 0 chr4 28318820 28318866 -174009481 + (TC)n Simple_repeat Simple_repeat 2 47 0 198 0 0 0 chr4 28318905 28318927 -174009420 + (TC)n Simple_repeat Simple_repeat 2 23 0 245 330 22 0 chr4 28320126 28320217 -174008130 + LTR67 LTR ERVL 458 550 -7 1923 125 37 10 chr4 28321947 28322244 -174006103 - AluSq SINE Alu -8 305 1 230 173 0 19 chr4 28323359 28323368 -174004979 + (TATG)n Simple_repeat Simple_repeat 1 9 -42 2309 94 10 0 chr4 28323368 28323665 -174004682 + AluSq SINE Alu 1 300 -13 230 173 0 19 chr4 28323665 28323707 -174004640 + (TATG)n Simple_repeat Simple_repeat 9 51 0 202 133 0 67 chr4 28323897 28323957 -174004390 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 1700 193 90 10 chr4 28323974 28324374 -174003973 - MER63B DNA MER1_type -1 435 4 2275 67 0 0 chr4 28324581 28324849 -174003498 - AluY SINE Alu -17 294 27 395 299 41 25 chr4 28326827 28327024 -174001323 + MIR SINE MIR 56 255 -7 21 0 0 0 chr4 28327053 28327074 -174001273 + AT_rich Low_complexity Low_complexity 1 21 0 235 203 16 23 chr4 28327114 28327242 -174001105 + (TA)n Simple_repeat Simple_repeat 2 128 0 456 332 32 32 chr4 28328141 28328394 -173999953 + MIR SINE MIR 10 262 0 234 0 0 0 chr4 28329907 28329933 -173998414 + (T)n Simple_repeat Simple_repeat 1 26 0 518 159 9 0 chr4 28330133 28330240 -173998107 + GA-rich Low_complexity Low_complexity 5 112 0 258 347 76 0 chr4 28330592 28330736 -173997611 - MIR SINE MIR -73 189 35 212 276 0 0 chr4 28331062 28331120 -173997227 + T-rich Low_complexity Low_complexity 1 58 0 475 286 161 30 chr4 28331182 28331549 -173996798 + MLT1K LTR MaLR 164 578 -10 936 227 84 0 chr4 28331922 28332125 -173996222 - MER58A DNA MER1_type -1 223 4 6945 116 64 26 chr4 28332225 28333248 -173995099 - Tigger3b DNA MER2_type -1797 1231 155 4335 114 31 1 chr4 28333248 28333607 -173994740 - L1PB1 LINE L1 -1 6150 5762 315 0 0 0 chr4 28333607 28333642 -173994705 + (TA)n Simple_repeat Simple_repeat 2 36 0 4335 114 31 1 chr4 28333642 28333933 -173994414 - L1PB1 LINE L1 -389 5762 5481 6945 116 64 26 chr4 28333933 28334095 -173994252 - Tigger3b DNA MER2_type -2873 155 1 1318 211 55 49 chr4 28334095 28334421 -173993926 - MLT1J LTR MaLR -109 402 75 2273 122 0 0 chr4 28334696 28334992 -173993355 + AluSx SINE Alu 1 296 -16 265 235 112 20 chr4 28335360 28335458 -173992889 - L2 LINE L2 -27 3286 3180 832 267 0 6 chr4 28336235 28336411 -173991936 - LTR16A LTR ERVL -260 190 16 203 338 68 61 chr4 28336821 28336969 -173991378 - L2 LINE L2 -190 3082 2934 616 253 48 11 chr4 28337570 28337756 -173990591 - MIR SINE MIR 0 262 70 2140 138 41 39 chr4 28337869 28338232 -173990115 + THE1B LTR MaLR 1 364 0 287 253 130 50 chr4 28338271 28338463 -173989884 - MIR SINE MIR -56 206 3 359 312 54 5 chr4 28338626 28338812 -173989535 + MIR3 SINE MIR 12 206 -2 2227 112 3 0 chr4 28339035 28339339 -173989008 - AluSx SINE Alu -7 305 1 313 217 70 77 chr4 28340443 28340586 -173987761 - MER112 DNA MER1_type -9 251 110 213 65 0 0 chr4 28340600 28340631 -173987716 + (CA)n Simple_repeat Simple_repeat 2 32 0 933 175 32 16 chr4 28340692 28340881 -173987466 + MLT1D LTR MaLR 6 197 -308 598 261 13 7 chr4 28340889 28341042 -173987305 + MLT1D LTR MaLR 350 503 -2 180 0 0 0 chr4 28341900 28341920 -173986427 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 667 219 22 0 chr4 28342473 28342610 -173985737 + FLAM_C SINE Alu 2 141 -2 1843 177 24 12 chr4 28342654 28342987 -173985360 + MER1B DNA MER1_type 1 337 0 679 208 8 0 chr4 28343523 28343648 -173984699 - MER45A DNA AcHobo -52 126 1 197 231 0 19 chr4 28343809 28343861 -173984486 + MER5A DNA MER1_type 114 164 -25 318 270 40 0 chr4 28344461 28344561 -173983786 - MIR SINE MIR -41 221 118 461 267 18 48 chr4 28344608 28344773 -173983574 - MIR SINE MIR -83 179 20 2097 147 45 17 chr4 28345064 28345418 -173982929 - THE1B LTR MaLR 0 364 1 180 280 20 0 chr4 28345903 28345953 -173982394 - MIR SINE MIR -27 235 185 264 222 19 19 chr4 28346045 28346124 -173982223 - MIR SINE MIR -115 93 14 204 281 66 41 chr4 28346681 28346802 -173981545 + MIR SINE MIR 30 153 -109 611 292 92 77 chr4 28346956 28347476 -173980871 + MLT1K LTR MaLR 39 566 -22 375 246 93 0 chr4 28348371 28348489 -173979858 + MIR SINE MIR 106 234 -28 232 291 13 13 chr4 28349200 28349279 -173979068 + MIR SINE MIR 72 150 -112 722 245 115 36 chr4 28349482 28349735 -173978612 - MLT1K LTR MaLR 0 615 316 351 0 0 0 chr4 28350012 28350051 -173978296 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 484 321 110 5 chr4 28350189 28350398 -173977949 + MIR SINE MIR 15 245 -17 1909 165 18 3 chr4 28350695 28351034 -173977313 - L1MA5 LINE L1 -5 6295 5952 240 35 0 0 chr4 28352028 28352057 -173976290 + (TG)n Simple_repeat Simple_repeat 1 29 0 2068 114 0 0 chr4 28352070 28352334 -173976013 - AluSx SINE Alu -30 282 19 806 259 53 27 chr4 28352437 28352700 -173975647 + L2 LINE L2 2537 2806 -508 607 220 215 16 chr4 28352715 28352901 -173975446 + MLT1G1 LTR MaLR 343 588 -2 1874 167 0 3 chr4 28352915 28353215 -173975132 + AluJb SINE Alu 1 299 -13 2213 131 3 0 chr4 28353536 28353842 -173974505 - AluSx SINE Alu -5 307 1 516 301 61 34 chr4 28354225 28354521 -173973826 - L3 LINE CR1 -636 941 638 1946 212 18 20 chr4 28355142 28355206 -173973141 + L1M4 LINE L1 4787 4850 -1296 1709 189 3 31 chr4 28355206 28355523 -173972824 - AluJb SINE Alu -4 308 1 1946 212 18 20 chr4 28355523 28355907 -173972440 + L1M4 LINE L1 4850 5234 -912 186 261 52 78 chr4 28355907 28356022 -173972325 - L2 LINE L2 -89 3224 3113 348 308 37 9 chr4 28356151 28356357 -173971990 - L2 LINE L2 -317 2996 2782 486 231 50 31 chr4 28356430 28356590 -173971757 - LTR67 LTR ERVL 0 557 395 444 314 0 8 chr4 28356770 28356891 -173971456 - LTR67 LTR ERVL -391 166 47 808 81 18 0 chr4 28356895 28357006 -173971341 - AluY SINE Alu -10 301 189 750 306 77 38 chr4 28357070 28357169 -173971178 - L2 LINE L2 -660 2654 2560 803 191 73 11 chr4 28357169 28357347 -173971000 + MER5A DNA MER1_type 1 189 0 750 306 77 38 chr4 28357347 28357910 -173970437 - L2 LINE L2 -754 2560 1966 233 318 68 23 chr4 28358466 28358598 -173969749 + MIR3 SINE MIR 11 148 -60 1887 168 115 6 chr4 28358734 28359091 -173969256 + MSTD LTR MaLR 1 396 0 194 294 25 34 chr4 28359560 28359679 -173968668 - MIR SINE MIR -65 143 26 352 297 0 0 chr4 28359733 28359824 -173968523 - MIR SINE MIR -5 257 167 * 447 268 176 0 chr4 28359821 28359963 -173968384 + MIR SINE MIR 77 243 -19 278 336 6 0 chr4 28360862 28360976 -173967371 - MIR SINE MIR -55 153 41 270 242 15 0 chr4 28361654 28361720 -173966627 + MLT1I LTR MaLR 327 393 -16 180 318 0 0 chr4 28361734 28361778 -173966569 - MIR SINE MIR -161 101 58 479 291 143 14 chr4 28361788 28362011 -173966336 - MIR SINE MIR -9 253 2 5604 114 28 12 chr4 28362201 28363048 -173965299 - Tigger4(Zombi) DNA MER2_type 0 2731 1871 512 111 14 0 chr4 28363047 28363119 -173965228 - Tigger4(Zombi) DNA MER2_type -2587 144 72 * 934 78 0 0 chr4 28363119 28363234 -173965113 + AluSg/x SINE Alu 176 290 -20 334 190 0 0 chr4 28363234 28363292 -173965055 - Tigger4(Zombi) DNA MER2_type -2673 58 1 479 307 84 31 chr4 28363465 28363690 -173964657 + MIR SINE MIR 20 256 -6 1617 206 130 3 chr4 28363894 28364272 -173964075 - MSTB LTR MaLR 0 426 1 2247 96 0 0 chr4 28364711 28364992 -173963355 - AluSx SINE Alu -12 300 20 246 337 122 5 chr4 28365283 28365488 -173962859 + MIR SINE MIR 34 262 0 326 265 169 7 chr4 28366024 28366160 -173962187 + MIR SINE MIR 28 185 -77 2233 129 0 0 chr4 28366308 28366617 -173961730 - AluSx SINE Alu -3 309 1 195 184 0 0 chr4 28366674 28366712 -173961635 + (TA)n Simple_repeat Simple_repeat 2 39 0 697 263 63 70 chr4 28366896 28367227 -173961120 + MLT1H LTR MaLR 212 540 -9 450 53 0 0 chr4 28368060 28368117 -173960230 + (TC)n Simple_repeat Simple_repeat 1 57 0 291 289 33 0 chr4 28368338 28368428 -173959919 - MIR SINE MIR -86 176 84 247 254 14 28 chr4 28368744 28368815 -173959532 + MER103 DNA DNA 64 133 -33 2505 68 0 0 chr4 28369057 28369351 -173958996 - AluY SINE Alu -17 294 1 599 299 39 19 chr4 28369357 28369564 -173958783 - MLT1J LTR MaLR -292 219 9 728 248 78 14 chr4 28369643 28369861 -173958486 - MLT1I LTR MaLR 0 409 178 1237 238 41 33 chr4 28370156 28370527 -173957820 + MLT1H LTR MaLR 90 549 0 408 239 172 75 chr4 28370527 28370771 -173957576 - LTR67 LTR ERVL -46 511 242 424 214 60 119 chr4 28371054 28371255 -173957092 - MLT1L LTR MaLR -421 194 6 487 259 18 0 chr4 28371376 28371488 -173956859 + MER81 DNA DNA 1 114 0 938 234 36 0 chr4 28371660 28371882 -173956465 - MIR SINE MIR -32 230 1 250 192 29 48 chr4 28373387 28373491 -173954856 + (CATATA)n Simple_repeat Simple_repeat 3 104 0 12063 25 2 0 chr4 28374849 28377010 -173951337 - L1PA3 LINE L1 0 6155 3993 19308 50 1 3 chr4 28377010 28379357 -173948990 - L1PA3 LINE L1 -3800 2346 5 1844 169 3 13 chr4 28379392 28379705 -173948642 + AluJb SINE Alu 1 310 -2 338 366 83 24 chr4 28379931 28380136 -173948211 + MIR SINE MIR 46 262 0 849 166 43 7 chr4 28380549 28380688 -173947659 + FRAM SINE Alu 1 138 -38 268 204 48 29 chr4 28380868 28380971 -173947376 - MIR3 SINE MIR -23 185 81 22 0 0 0 chr4 28381710 28381732 -173946615 + AT_rich Low_complexity Low_complexity 1 22 0 314 224 71 12 chr4 28381772 28381857 -173946490 + MIR SINE MIR 146 235 -27 480 281 46 13 chr4 28381892 28382045 -173946302 - MIR SINE MIR -101 161 4 2465 97 0 0 chr4 28382261 28382569 -173945778 - AluSx SINE Alu -4 308 1 1409 267 115 18 chr4 28432861 28433358 -173894989 + L2 LINE L2 2467 3008 -305 330 211 164 19 chr4 28433385 28433489 -173894858 - L1MC4 LINE L1 -1069 6973 6855 22 0 0 0 chr4 28433743 28433765 -173894582 + AT_rich Low_complexity Low_complexity 1 22 0 192 188 0 0 chr4 28433854 28433886 -173894461 + L2 LINE L2 3268 3299 -14 243 0 0 0 chr4 28436081 28436108 -173892239 + (TG)n Simple_repeat Simple_repeat 2 28 0 259 329 12 0 chr4 28436178 28436260 -173892087 - L2 LINE L2 -218 3054 2972 708 160 11 48 chr4 28436964 28437152 -173891195 + L1 LINE L1 2859 3039 -3107 4262 241 91 5 chr4 28437162 28438200 -173890147 + L1PA13 LINE L1 1 1127 -5660 338 119 0 0 chr4 28438200 28438259 -173890088 + L1PA13 LINE L1 1648 1706 -5081 404 251 63 63 chr4 28438359 28438550 -173889797 + MER112 DNA MER1_type 70 260 0 337 167 225 0 chr4 28439061 28439171 -173889176 + MIR SINE MIR 50 189 -73 4698 144 8 13 chr4 28439511 28440291 -173888056 + THE1B-int LTR MaLR 568 1343 -237 1648 113 0 4 chr4 28440291 28440530 -173887817 + THE1B LTR MaLR 127 364 0 987 218 0 0 chr4 28440533 28440739 -173887608 - L1P LINE L1 -3347 2799 2594 6020 139 36 6 chr4 28440839 28441930 -173886417 - Tigger1 DNA MER2_type -531 1887 765 398 95 16 0 chr4 28442045 28442108 -173886239 - MER31A LTR ERV1 -420 65 2 1422 111 10 14 chr4 28442867 28443074 -173885273 - AluSg/x SINE Alu -14 298 93 391 313 89 18 chr4 28443175 28443399 -173884948 - L1MEc LINE L1 -4246 2150 1911 21 36 0 0 chr4 28444073 28444101 -173884246 + AT_rich Low_complexity Low_complexity 1 28 0 185 344 0 0 chr4 28444181 28444242 -173884105 + L2 LINE L2 3247 3307 -6 4304 40 8 0 chr4 28444377 28445158 -173883189 - L1P2 LINE L1 -354 5801 5017 3278 50 5 0 chr4 28445154 28445592 -173882755 + L1P LINE L1 3666 4105 -2041 * 5926 131 19 20 chr4 28445692 28446710 -173881637 + MER11C LTR ERVK 55 1071 0 1937 109 0 4 chr4 28446710 28446986 -173881361 + HERVK11 LTR ERVK 1 275 -7678 222 37 0 0 chr4 28447090 28447117 -173881230 + (TG)n Simple_repeat Simple_repeat 2 28 0 2172 160 75 55 chr4 28448478 28448984 -173879363 + LTR44 LTR ERV1 2 517 -2 321 318 16 0 chr4 28449686 28449815 -173878532 + L1ME2 LINE L1 5535 5665 -2330 1087 265 106 26 chr4 28449830 28450320 -173878027 - MLT1H1 LTR MaLR -15 540 12 1255 193 105 55 chr4 28450332 28450789 -173877558 + L1ME2 LINE L1 5676 6155 -9 228 289 167 18 chr4 28451653 28451767 -173876580 + L2 LINE L2 3142 3272 0 4342 75 0 61 chr4 28452626 28453352 -173874995 + MER11A LTR ERVK 439 1261 -5 654 13 0 0 chr4 28453354 28453429 -173874918 + (TA)n Simple_repeat Simple_repeat 1 75 0 985 248 11 7 chr4 28453433 28453703 -173874644 - AluSx SINE Alu -1 311 41 312 314 51 17 chr4 28453928 28454046 -173874301 - MIR SINE MIR -23 239 118 382 335 79 29 chr4 28455426 28455744 -173872603 - L2 LINE L2 -196 3076 2742 209 369 41 16 chr4 28455773 28455895 -173872452 - L2 LINE L2 -655 2659 2535 344 273 63 42 chr4 28455964 28456107 -173872240 - MER5B DNA MER1_type -19 159 14 1152 304 54 25 chr4 28456129 28456612 -173871735 + L2 LINE L2 2146 2642 -672 1346 123 0 0 chr4 28456619 28456798 -173871549 - AluSg/x SINE Alu -15 297 119 245 358 20 13 chr4 28457055 28457206 -173871141 + L1MEd LINE L1 595 746 -5373 498 276 77 35 chr4 28457466 28457752 -173870595 + L1MEd LINE L1 958 1255 -4864 4492 28 1 1 chr4 28458136 28458899 -173869448 - L1P2 LINE L1 -570 5584 4822 * 7962 33 0 0 chr4 28458898 28459903 -173868444 + L1P LINE L1 4346 5350 -796 278 22 0 67 chr4 28460027 28460072 -173868275 + MADE1 DNA Mariner 2 43 -37 2082 114 0 4 chr4 28460083 28460364 -173867983 - AluSx SINE Alu -32 280 1 497 179 0 0 chr4 28460364 28460448 -173867899 - MLT1A1 LTR MaLR -281 84 1 320 196 0 0 chr4 28460628 28460684 -173867663 - L2 LINE L2 -4 3309 3254 32 57 0 0 chr4 28461975 28462028 -173866319 + AT_rich Low_complexity Low_complexity 1 53 0 534 272 0 0 chr4 28462607 28462769 -173865578 + (TATATG)n Simple_repeat Simple_repeat 6 167 0 301 333 0 0 chr4 28462775 28462865 -173865482 + L1MC4 LINE L1 6614 6703 -1339 46 67 0 33 chr4 28462923 28462978 -173865369 + AT_rich Low_complexity Low_complexity 1 56 -89 1855 135 14 35 chr4 28462978 28463266 -173865081 - AluSx SINE Alu -14 298 17 46 67 0 33 chr4 28463266 28463360 -173864987 + AT_rich Low_complexity Low_complexity 56 145 0 877 169 33 16 chr4 28463364 28463547 -173864800 - L1MB7 LINE L1 -29 6155 5970 335 149 15 0 chr4 28463554 28463621 -173864726 - Alu SINE Alu 0 302 235 253 191 0 0 chr4 28464162 28464209 -173864138 - L2 LINE L2 -1 3312 3266 2010 214 14 40 chr4 28465756 28466275 -173862072 + MLT1D LTR MaLR 1 505 0 213 299 124 55 chr4 28466341 28466542 -173861805 - MIR SINE MIR -37 225 11 1076 281 54 20 chr4 28466594 28467035 -173861312 + LTR68 LTR ERV1 1 456 -284 2182 110 0 0 chr4 28467137 28467429 -173860918 + AluSp SINE Alu 21 312 -1 198 0 0 0 chr4 28467781 28467803 -173860544 + (A)n Simple_repeat Simple_repeat 1 22 0 2214 90 0 4 chr4 28468362 28468670 -173859677 + AluSq SINE Alu 5 311 0 307 114 0 0 chr4 28468741 28468785 -173859562 + MSTA LTR MaLR 334 377 -51 285 75 0 0 chr4 28469226 28469266 -173859081 + (GA)n Simple_repeat Simple_repeat 1 40 0 346 280 34 34 chr4 28469304 28469422 -173858925 - L1ME3 LINE L1 -66 6096 5979 2793 186 59 9 chr4 28469425 28469952 -173858395 - MER68 LTR ERV1 0 562 10 330 230 72 86 chr4 28469957 28470001 -173858346 - L1ME3 LINE L1 -181 5981 5938 2284 94 10 3 chr4 28470001 28470298 -173858049 - AluSx SINE Alu -13 299 1 330 230 72 86 chr4 28470298 28470392 -173857955 - L1ME3 LINE L1 -224 5938 5845 407 281 163 10 chr4 28470503 28470699 -173857648 - MIR SINE MIR -3 259 34 1405 178 122 21 chr4 28470790 28471077 -173857270 + MLT1D LTR MaLR 3 318 -187 5253 129 1 9 chr4 28471787 28472585 -173855762 + L1PA14 LINE L1 5370 6161 0 2240 157 23 3 chr4 28472620 28472970 -173855377 - MLT1A1 LTR MaLR -8 357 1 909 136 0 0 chr4 28473145 28473270 -173855077 + THE1B LTR MaLR 89 213 -151 245 184 20 0 chr4 28473370 28473419 -173854928 - MER53 DNA DNA -137 52 3 194 333 120 40 chr4 28473420 28473570 -173854777 - MIR SINE MIR -78 184 23 2060 151 0 3 chr4 28474497 28474871 -173853476 + AluSq SINE Alu 1 373 0 451 206 50 35 chr4 28474922 28475063 -173853284 - L1ME4a LINE L1 0 6121 5979 396 254 103 47 chr4 28475096 28475309 -173853038 - L1ME4a LINE L1 -207 5914 5690 1408 169 122 21 chr4 28475557 28475836 -173852511 + AluJo SINE Alu 1 307 -5 263 150 0 0 chr4 28476129 28476169 -173852178 + MER53 DNA DNA 150 189 0 1480 146 54 44 chr4 28477721 28478016 -173850331 + AluJo SINE Alu 1 298 -14 231 135 0 0 chr4 28478745 28478782 -173849565 - L2 LINE L2 -16 3297 3261 894 188 17 153 chr4 28478950 28479302 -173849045 - LTR37A LTR ERV1 -12 414 111 640 238 92 0 chr4 28479703 28479867 -173848480 + MIR SINE MIR 81 259 -3 2258 93 10 0 chr4 28480012 28480302 -173848045 - AluSc SINE Alu -16 293 1 845 96 0 0 chr4 28480533 28480637 -173847710 - AluSg/x SINE Alu -16 296 193 254 135 0 0 chr4 28480668 28480705 -173847642 + MER21A LTR ERV1 162 198 -733 * 2480 180 102 118 chr4 28480681 28481474 -173846873 + MER21A LTR ERV1 131 910 -21 1011 336 43 12 chr4 28481521 28482110 -173846237 - L2 LINE L2 -312 3001 2392 674 144 0 0 chr4 28482116 28482213 -173846134 + FLAM_C SINE Alu 22 118 -25 583 212 15 17 chr4 28482227 28482577 -173845770 + GA-rich Low_complexity Low_complexity 1 349 0 186 43 0 0 chr4 28482582 28482605 -173845742 + (GGGA)n Simple_repeat Simple_repeat 2 24 0 204 139 0 0 chr4 28482879 28482915 -173845432 - MIR SINE MIR -1 261 226 307 289 102 16 chr4 28482973 28483101 -173845246 + MIR SINE MIR 69 207 -55 698 283 17 71 chr4 28484686 28484897 -173843450 + L2 LINE L2 2960 3147 -166 2320 78 4 0 chr4 28484897 28485212 -173843135 - AluSx SINE Alu 0 316 1 698 283 17 71 chr4 28485212 28485352 -173842995 + L2 LINE L2 3147 3293 -20 215 209 0 0 chr4 28485533 28485576 -173842771 + MIR SINE MIR 50 92 -116 1059 169 47 67 chr4 28486003 28486257 -173842090 - Tigger3(Golem) DNA MER2_type -2780 249 1 2322 98 0 7 chr4 28486629 28486934 -173841413 + AluSx SINE Alu 1 303 -9 1157 138 0 0 chr4 28486934 28487101 -173841246 + AluSg/x SINE Alu 134 300 -12 1576 165 88 97 chr4 28487101 28487567 -173840780 - MER31B LTR ERV1 -4 462 1 2271 110 0 3 chr4 28487761 28488062 -173840285 + AluSx SINE Alu 1 300 -12 2140 120 47 0 chr4 28488678 28488977 -173839370 + AluSq SINE Alu 1 313 0 207 0 0 0 chr4 28489093 28489116 -173839231 + (A)n Simple_repeat Simple_repeat 1 23 0 936 219 0 0 chr4 28489131 28489327 -173839020 + MIR SINE MIR 57 252 -10 351 78 0 0 chr4 28490048 28490099 -173838248 + (TG)n Simple_repeat Simple_repeat 1 51 0 1638 184 0 35 chr4 28491813 28492129 -173836218 + AluJo SINE Alu 1 305 -7 189 0 0 0 chr4 28492135 28492156 -173836191 + (TG)n Simple_repeat Simple_repeat 2 22 0 324 48 0 0 chr4 28492158 28492200 -173836147 + (GA)n Simple_repeat Simple_repeat 1 42 0 2319 82 14 0 chr4 28492527 28492821 -173835526 - AluSp SINE Alu -15 298 1 2238 156 22 27 chr4 28492821 28493064 -173835283 - L1MB4 LINE L1 -118 6062 5820 2201 123 3 3 chr4 28493064 28493366 -173834981 - AluSx SINE Alu -9 303 2 2238 156 22 27 chr4 28493366 28493532 -173834815 - L1MB4 LINE L1 -360 5820 5655 286 274 39 0 chr4 28493538 28493640 -173834707 - L1MC4a LINE L1 -1922 5886 5781 1930 134 23 10 chr4 28494089 28494388 -173833959 + AluSx SINE Alu 1 303 -9 1715 108 0 0 chr4 28494389 28494611 -173833736 + AluSg/x SINE Alu 87 308 -2 746 160 26 39 chr4 28494816 28494972 -173833375 - L1PB4 LINE L1 -1 6155 6002 1542 197 34 3 chr4 28495049 28495343 -173833004 + AluJb SINE Alu 1 303 -9 230 193 18 18 chr4 28495938 28495995 -173832352 + A-rich Low_complexity Low_complexity 3 59 0 2484 29 0 0 chr4 28496039 28496317 -173832030 - AluYa5 SINE Alu -4 307 30 1856 157 16 23 chr4 28497035 28497340 -173831007 - AluJo SINE Alu -4 308 6 1003 167 34 12 chr4 28497672 28497871 -173830476 + L1MA9 LINE L1 5592 5793 -519 2133 114 0 3 chr4 28497975 28498265 -173830082 + AluSx SINE Alu 1 289 -23 2768 168 12 8 chr4 28498270 28498782 -173829565 + L1MA9 LINE L1 5799 6312 0 2214 115 3 0 chr4 28498820 28499115 -173829232 + AluSx SINE Alu 1 296 -16 1609 161 67 30 chr4 28500349 28500648 -173827699 - AluJo SINE Alu -2 310 1 1402 210 40 0 chr4 28501265 28501597 -173826750 - AluSx SINE Alu 0 344 1 21 0 0 0 chr4 28501670 28501691 -173826656 + AT_rich Low_complexity Low_complexity 1 21 0 878 138 0 7 chr4 28501804 28501956 -173826391 + (TCCC)n Simple_repeat Simple_repeat 4 154 0 1365 61 0 0 chr4 28502748 28502928 -173825419 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 425 147 20 98 chr4 28503588 28503690 -173824657 - L1MB7 LINE L1 -20 6164 6071 398 273 29 14 chr4 28503706 28503845 -173824502 - L2 LINE L2 -19 3294 3154 2050 166 144 7 chr4 28503852 28504263 -173824084 + MLT1C LTR MaLR 1 467 0 596 171 21 50 chr4 28504386 28504526 -173823821 + MER21A LTR ERV1 8 143 -788 362 123 31 0 chr4 28504638 28504703 -173823644 + G-rich Low_complexity Low_complexity 5 71 0 711 105 24 0 chr4 28504709 28504833 -173823514 + GA-rich Low_complexity Low_complexity 4 130 0 192 250 44 0 chr4 28504847 28504915 -173823432 + MER5A DNA MER1_type 54 124 -65 479 164 86 86 chr4 28505038 28505178 -173823169 - LTR48 LTR ERV1 -3 784 645 1197 140 16 5 chr4 28505196 28505389 -173822958 + MER44D DNA MER2_type 8 472 -137 777 168 0 22 chr4 28505389 28505526 -173822821 - FLAM_A SINE Alu -8 134 1 803 159 29 7 chr4 28505526 28505664 -173822683 + MER44D DNA MER2_type 565 705 0 561 220 90 32 chr4 28505664 28505968 -173822379 - LTR48B LTR ERV1 -141 616 128 349 307 9 26 chr4 28505941 28506055 -173822292 - MER34 LTR ERV1 -430 112 1 * 1674 165 18 32 chr4 28506606 28506891 -173821456 + AluJo SINE Alu 1 281 -31 183 27 54 27 chr4 28506899 28506936 -173821411 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 491 247 127 60 chr4 28508313 28508596 -173819751 + L2 LINE L2 3012 3313 0 1583 198 3 23 chr4 28508667 28508975 -173819372 + AluJo SINE Alu 1 302 -10 2020 147 6 10 chr4 28508975 28509288 -173819059 + AluSx SINE Alu 1 312 0 389 242 21 0 chr4 28509421 28509516 -173818831 - MIR SINE MIR -108 154 58 252 250 0 0 chr4 28509608 28509668 -173818679 + MIR SINE MIR 41 100 -108 681 95 11 0 chr4 28509940 28510059 -173818288 - AluSc SINE Alu 0 305 186 351 327 87 30 chr4 28510169 28510437 -173817910 + L2 LINE L2 2766 3047 -266 1627 167 10 42 chr4 28510592 28510903 -173817444 - AluSx SINE Alu -11 301 1 2800 20 0 0 chr4 28511024 28511328 -173817019 + AluY SINE Alu 1 304 -7 2680 52 0 0 chr4 28511422 28511732 -173816615 + AluY SINE Alu 1 310 -1 348 274 85 26 chr4 28511739 28511892 -173816455 + MIR3 SINE MIR 47 208 0 309 270 135 16 chr4 28512719 28512845 -173815502 - MIR3 SINE MIR -62 146 6 295 327 50 0 chr4 28512992 28513093 -173815254 - MIR SINE MIR 0 262 157 381 237 64 32 chr4 28513093 28513249 -173815098 - MIR SINE MIR 0 262 102 2147 126 3 0 chr4 28513250 28513543 -173814804 + AluSp SINE Alu 2 295 -18 7203 136 20 10 chr4 28514463 28514684 -173813663 - HSMAR2 DNA Mariner 0 1302 1085 2167 100 4 4 chr4 28514684 28514999 -173813348 - AluSc SINE Alu 0 315 1 7203 136 20 10 chr4 28514999 28515898 -173812449 - HSMAR2 DNA Mariner -217 1085 170 326 190 0 38 chr4 28516207 28516286 -173812061 + MIR SINE MIR 84 159 -103 1894 199 111 11 chr4 28516286 28516729 -173811618 - MLT1F LTR MaLR 0 542 56 275 61 0 0 chr4 28517152 28517185 -173811162 + AluY SINE Alu 59 91 -210 357 211 32 42 chr4 28517344 28517439 -173810908 - MER103 DNA DNA -6 160 67 333 309 52 7 chr4 28517612 28517748 -173810599 + MIR SINE MIR 50 191 -71 186 324 27 0 chr4 28517780 28517854 -173810493 + MIR SINE MIR 19 94 -168 671 214 0 36 chr4 28517854 28517994 -173810353 - FLAM_C SINE Alu -7 136 2 2035 162 0 0 chr4 28518036 28518339 -173810008 - AluJb SINE Alu -9 303 1 373 274 30 42 chr4 28518343 28518511 -173809836 + MIR SINE MIR 96 261 -1 243 256 70 12 chr4 28518524 28518610 -173809737 - MIR SINE MIR -166 96 6 278 177 0 16 chr4 28519673 28519735 -173808612 + GA-rich Low_complexity Low_complexity 3 63 0 822 206 56 6 chr4 28520066 28520246 -173808101 + MER53 DNA DNA 1 189 0 1271 135 42 9 chr4 28520986 28521201 -173807146 + AluJo SINE Alu 87 308 -4 348 281 7 65 chr4 28521683 28521822 -173806525 - L2 LINE L2 0 3313 3183 2328 68 3 3 chr4 28521839 28522150 -173806197 + AluY SINE Alu 1 311 0 4129 203 49 37 chr4 28522159 28522624 -173805723 + Charlie1a DNA MER1_type 12 470 -2291 2158 94 0 10 chr4 28522624 28522932 -173805415 + AluSp SINE Alu 7 311 -2 4129 203 49 37 chr4 28522932 28523486 -173804861 + Charlie1a DNA MER1_type 470 1046 -1715 1656 171 3 19 chr4 28523486 28523795 -173804552 + AluJb SINE Alu 1 304 -8 4129 203 49 37 chr4 28523795 28523818 -173804529 + Charlie1a DNA MER1_type 1046 1067 -388 226 244 98 0 chr4 28523825 28523907 -173804440 + L1MC4 LINE L1 6614 6703 -1339 404 296 12 0 chr4 28523907 28524076 -173804271 + (TATATG)n Simple_repeat Simple_repeat 3 173 0 3466 215 40 6 chr4 28524177 28525020 -173803327 - L1M4 LINE L1 -966 5180 4309 297 186 51 0 chr4 28525020 28525079 -173803268 + Charlie1a DNA MER1_type 1394 1455 0 183 361 48 0 chr4 28525305 28525388 -173802959 + L2 LINE L2 3143 3229 -43 762 105 19 0 chr4 28525597 28525702 -173802645 - AluJb SINE Alu -11 301 195 570 323 136 19 chr4 28525702 28526032 -173802315 - L1M4 LINE L1 -1371 4775 4396 2109 90 3 30 chr4 28526032 28526333 -173802014 - AluSp SINE Alu -20 293 1 570 323 136 19 chr4 28526333 28526370 -173801977 - L1M4 LINE L1 -1750 4396 4365 362 274 35 22 chr4 28526504 28526664 -173801683 - L1MC4 LINE L1 -1336 6706 6589 315 311 0 11 chr4 28526590 28526680 -173801667 + L1MC4 LINE L1 6615 6703 -1339 * 252 0 0 0 chr4 28526781 28526809 -173801538 + (T)n Simple_repeat Simple_repeat 1 28 0 1274 266 120 12 chr4 28526963 28527814 -173800533 - L2 LINE L2 -3 3310 2356 306 50 0 0 chr4 28528065 28528105 -173800242 + (CA)n Simple_repeat Simple_repeat 2 41 0 207 0 0 0 chr4 28528594 28528617 -173799730 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2305 63 7 3 chr4 28528672 28528972 -173799375 + AluY SINE Alu 2 302 -9 265 240 10 19 chr4 28529342 28529446 -173798901 + (CCCCG)n Simple_repeat Simple_repeat 1 103 0 206 311 40 0 chr4 28530392 28530466 -173797881 + L2 LINE L2 3195 3271 -1 244 252 0 37 chr4 28531105 28531265 -173797082 + (CGG)n Simple_repeat Simple_repeat 1 154 0 23 0 0 0 chr4 28532038 28532061 -173796286 + GC_rich Low_complexity Low_complexity 1 23 0 202 208 42 0 chr4 28532588 28532636 -173795711 + (TA)n Simple_repeat Simple_repeat 1 50 0 2407 53 0 0 chr4 28533262 28533563 -173794784 + AluY SINE Alu 1 301 -10 23 0 0 0 chr4 28533591 28533614 -173794733 + AT_rich Low_complexity Low_complexity 1 23 0 332 255 10 39 chr4 28533825 28533927 -173794420 + MIR SINE MIR 59 157 -105 503 271 0 23 chr4 28534114 28534243 -173794104 + L2 LINE L2 3188 3313 0 581 273 70 66 chr4 28534502 28534569 -173793778 + MIR SINE MIR 1 66 -196 2195 94 0 22 chr4 28534569 28534887 -173793460 + AluY SINE Alu 1 311 0 581 273 70 66 chr4 28534887 28535061 -173793286 + MIR SINE MIR 66 243 -19 282 292 62 22 chr4 28535112 28535220 -173793127 - MIR SINE MIR -82 126 15 204 238 0 0 chr4 28536035 28536077 -173792270 + (CAA)n Simple_repeat Simple_repeat 3 44 0 185 268 188 27 chr4 28536478 28536590 -173791757 - MIR3 SINE MIR -50 158 29 189 265 29 44 chr4 28536716 28536784 -173791563 - L2 LINE L2 -10 3262 3196 374 294 51 89 chr4 28537539 28537725 -173790622 + L2 LINE L2 2550 2721 -593 1654 167 0 34 chr4 28537725 28538018 -173790329 - AluJb SINE Alu -29 283 1 374 294 51 89 chr4 28538018 28538147 -173790200 + L2 LINE L2 2721 2853 -461 1115 231 113 54 chr4 28538318 28538759 -173789588 + MLT1C LTR MaLR 1 467 0 353 338 78 22 chr4 28539796 28540164 -173788183 + L2 LINE L2 2638 3020 -252 412 249 333 34 chr4 28540520 28540697 -173787650 - MIR SINE MIR -1 261 32 261 283 66 66 chr4 28540766 28540872 -173787475 + L2 LINE L2 3075 3180 -92 1384 156 9 4 chr4 28541208 28541433 -173786914 + AluJo SINE Alu 1 226 -86 427 173 74 0 chr4 28541442 28541523 -173786824 + L1MB8 LINE L1 5739 5825 -353 422 138 0 0 chr4 28541523 28541581 -173786766 + AluJo SINE Alu 228 285 -27 2256 97 0 3 chr4 28541704 28542013 -173786334 - AluSg SINE Alu -2 308 1 214 29 57 0 chr4 28542111 28542146 -173786201 + (GA)n Simple_repeat Simple_repeat 2 38 0 2187 204 5 7 chr4 28542194 28542625 -173785722 + L1MB8 LINE L1 5638 6067 -111 208 333 208 24 chr4 28542628 28542796 -173785551 - MIR SINE MIR -61 201 3 205 62 0 31 chr4 28543417 28543449 -173784898 + MIR SINE MIR 124 154 -108 270 160 0 0 chr4 28543917 28543967 -173784380 + G-rich Low_complexity Low_complexity 5 54 0 209 351 0 43 chr4 28543996 28544090 -173784257 - MIR SINE MIR -13 249 160 2350 61 13 16 chr4 28544090 28544403 -173783944 + AluSp SINE Alu 1 312 -1 476 221 179 7 chr4 28544418 28544563 -173783784 + L2 LINE L2 3131 3300 -13 855 266 60 20 chr4 28544630 28544882 -173783465 - MIR SINE MIR 0 262 1 1008 121 33 22 chr4 28545011 28545193 -173783154 - L1MB3 LINE L1 -1 6182 5999 1490 106 46 0 chr4 28545275 28545492 -173782855 + AluY SINE Alu 1 227 -84 867 123 0 7 chr4 28545834 28545972 -173782375 + L1MB7 LINE L1 6029 6165 -19 439 221 145 23 chr4 28546365 28546496 -173781851 - MIR SINE MIR -74 188 42 1487 186 41 14 chr4 28546498 28546793 -173781554 + AluJb SINE Alu 1 303 -9 249 338 35 95 chr4 28546862 28547093 -173781254 + L2 LINE L2 3006 3222 -50 210 37 0 0 chr4 28547116 28547143 -173781204 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 951 291 85 6 chr4 28548018 28548358 -173779989 + L2 LINE L2 1888 2254 -1060 424 196 28 56 chr4 28548363 28548470 -173779877 - L2 LINE L2 -777 2537 2434 368 191 43 21 chr4 28548484 28548578 -173779769 + L2 LINE L2 2291 2386 -928 1681 154 13 31 chr4 28548684 28549002 -173779345 + AluSx SINE Alu 1 312 0 503 141 11 0 chr4 28549002 28549094 -173779253 + GA-rich Low_complexity Low_complexity 4 96 0 902 316 73 30 chr4 28549104 28549695 -173778652 + L2 LINE L2 2552 3313 0 246 341 11 11 chr4 28549906 28549997 -173778350 + MIR SINE MIR 33 123 -85 1846 118 14 21 chr4 28550022 28550302 -173778045 - AluJb SINE Alu -34 278 1 407 289 102 0 chr4 28550756 28550884 -173777463 + MIR SINE MIR 112 252 -10 329 132 264 28 chr4 28551548 28551645 -173776702 + AluJo/FLAM SINE Alu 2 127 -175 2034 149 0 0 chr4 28551645 28551947 -173776400 - AluSx SINE Alu -10 302 1 402 309 7 22 chr4 28553635 28553774 -173774573 - L2 LINE L2 -13 3300 3164 291 355 90 19 chr4 28554000 28554155 -173774192 - MIR SINE MIR -48 214 49 797 262 9 36 chr4 28554159 28554380 -173773967 - MIR SINE MIR 0 262 48 192 274 85 92 chr4 28554836 28554989 -173773358 + L2 LINE L2 3121 3272 0 318 236 79 63 chr4 28555105 28555232 -173773115 + MER63 DNA MER1_type 6 760 -76 253 306 14 0 chr4 28555230 28555302 -173773045 + MER63 DNA MER1_type 983 1055 -5 * 384 169 0 0 chr4 28555590 28555667 -173772680 + CT-rich Low_complexity Low_complexity 2 78 0 1300 112 6 0 chr4 28555768 28555946 -173772401 - AluSc SINE Alu -130 179 1 1934 135 10 0 chr4 28556467 28556764 -173771583 - AluSx SINE Alu -8 304 5 2281 98 0 0 chr4 28556861 28557157 -173771190 - AluSg SINE Alu -14 296 1 364 194 0 0 chr4 28557341 28557413 -173770934 - MLT1F1 LTR MaLR -4 563 492 234 0 0 0 chr4 28557682 28557708 -173770639 + (A)n Simple_repeat Simple_repeat 1 26 0 877 130 80 31 chr4 28557910 28558072 -173770275 + AluJo SINE Alu 79 248 -64 349 175 0 16 chr4 28558072 28558135 -173770212 + AluJo SINE Alu 225 286 -16 1532 176 26 7 chr4 28558225 28558531 -173769816 + AluJo SINE Alu 1 312 0 1243 132 5 5 chr4 28558817 28559022 -173769325 - AluSg/x SINE Alu -13 299 95 694 120 8 32 chr4 28559123 28559248 -173769099 - HSMAR2 DNA Mariner -1173 129 8 191 275 0 0 chr4 28560154 28560194 -173768153 - MIR SINE MIR -109 153 114 1855 159 3 13 chr4 28561012 28561327 -173767020 - AluJb SINE Alu 0 312 1 699 210 0 0 chr4 28561332 28561456 -173766891 - FLAM_A SINE Alu -9 124 1 512 349 87 36 chr4 28561562 28562112 -173766235 + L2 LINE L2 2006 2583 -731 593 230 34 27 chr4 28562409 28562557 -173765790 - MLT1J1 LTR MaLR -297 149 1 235 246 0 18 chr4 28562588 28562645 -173765702 + L2 LINE L2 3160 3215 -98 2071 120 0 0 chr4 28562653 28562952 -173765395 - AluSg SINE Alu -11 299 1 2054 103 3 29 chr4 28562952 28563264 -173765083 - AluSx SINE Alu -7 305 2 231 154 58 67 chr4 28563323 28563427 -173764920 + (TTAA)n Simple_repeat Simple_repeat 4 106 0 254 351 114 0 chr4 28563438 28563569 -173764778 + L2 LINE L2 2594 2739 -575 2849 180 121 30 chr4 28563913 28564329 -173764018 - LTR48 LTR ERV1 0 787 410 1864 127 48 0 chr4 28564329 28564620 -173763727 + AluSx SINE Alu 1 305 -7 2849 180 121 30 chr4 28564620 28564839 -173763508 - LTR48 LTR ERV1 -377 410 212 1890 122 21 3 chr4 28564839 28565125 -173763222 + AluSg SINE Alu 1 291 -19 2849 180 121 30 chr4 28565125 28565210 -173763137 - LTR48 LTR ERV1 -575 212 1 1085 198 46 92 chr4 28565356 28565745 -173762602 - MER39 LTR ERV1 -66 641 271 319 241 56 19 chr4 28565721 28565829 -173762518 - LTR29 LTR ERV1 -507 115 4 * 201 175 0 0 chr4 28566641 28566681 -173761666 + (TA)n Simple_repeat Simple_repeat 1 40 0 2099 96 14 0 chr4 28566689 28566990 -173761357 - AluSx SINE Alu 0 305 1 2001 114 0 0 chr4 28568290 28568637 -173759710 - AluSx SINE Alu 0 348 2 245 277 143 18 chr4 28568695 28568807 -173759540 + L2 LINE L2 3138 3263 -9 1721 149 4 7 chr4 28569082 28569363 -173758984 + AluSx SINE Alu 1 280 -32 541 198 45 0 chr4 28569562 28569673 -173758674 + L1MA4 LINE L1 6072 6187 -113 2233 94 0 3 chr4 28570041 28570350 -173757997 + AluSx SINE Alu 1 308 -4 489 208 0 0 chr4 28570350 28570456 -173757891 + L1MA4 LINE L1 6179 6284 -16 261 0 0 0 chr4 28570463 28570492 -173757855 + (TA)n Simple_repeat Simple_repeat 1 29 0 204 179 0 0 chr4 28570533 28570572 -173757775 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 2254 90 0 3 chr4 28570707 28571008 -173757339 + AluSg SINE Alu 1 300 -10 288 329 126 35 chr4 28571224 28571455 -173756892 - L2 LINE L2 -181 3091 2840 615 203 124 45 chr4 28571707 28571909 -173756438 + MIR SINE MIR 42 259 -3 1367 111 0 32 chr4 28572069 28572259 -173756088 - AluSx SINE Alu -20 292 109 773 47 0 28 chr4 28572259 28572366 -173755981 - MER11A LTR ERVK 0 1266 1163 855 104 0 0 chr4 28572374 28572489 -173755858 - AluSx SINE Alu -197 115 1 191 308 19 0 chr4 28572541 28572593 -173755754 + L2 LINE L2 3217 3269 -3 2869 149 46 8 chr4 28573120 28573617 -173754730 + L1MC2 LINE L1 5829 6344 0 2215 125 6 3 chr4 28573697 28574008 -173754339 + AluSx SINE Alu 1 312 0 1556 205 0 33 chr4 28574014 28574321 -173754026 + AluJo SINE Alu 1 297 -15 207 206 79 48 chr4 28574352 28574415 -173753932 - MIR3 SINE MIR -29 179 115 478 256 194 14 chr4 28575092 28575303 -173753044 + MIR SINE MIR 14 262 0 233 200 0 0 chr4 28576183 28576228 -173752119 + (CA)n Simple_repeat Simple_repeat 2 46 0 407 251 147 43 chr4 28577414 28577577 -173750770 + MIR SINE MIR 2 181 -81 230 313 0 73 chr4 28577606 28577702 -173750645 - MIR SINE MIR -169 93 5 1854 174 0 3 chr4 28577738 28578036 -173750311 + AluJb SINE Alu 1 297 -15 309 115 19 0 chr4 28578045 28578097 -173750250 + L1M4 LINE L1 5691 5743 -441 918 216 26 56 chr4 28578186 28578455 -173749892 - MIR SINE MIR 0 262 2 2410 84 0 0 chr4 28579247 28579544 -173748803 - AluSq SINE Alu -16 297 1 1051 105 0 0 chr4 28579548 28579681 -173748666 - AluSq/x SINE Alu -180 133 1 27 0 0 0 chr4 28579687 28579714 -173748633 + AT_rich Low_complexity Low_complexity 1 27 0 2169 129 0 13 chr4 28579714 28580024 -173748323 - AluSx SINE Alu -2 310 5 1387 80 0 6 chr4 28580064 28580239 -173748108 - L1PA11 LINE L1 -1 6173 6000 272 218 18 82 chr4 28581127 28581237 -173747110 + MIR SINE MIR 77 179 -83 287 24 0 24 chr4 28581503 28581544 -173746803 + (TG)n Simple_repeat Simple_repeat 1 40 0 2056 141 7 0 chr4 28581642 28581946 -173746401 - AluSx SINE Alu -6 306 1 324 348 124 11 chr4 28582242 28582509 -173745838 + L2 LINE L2 2460 2756 -558 569 248 94 35 chr4 28582578 28582780 -173745567 + MIR SINE MIR 48 261 -1 249 292 0 71 chr4 28583695 28583808 -173744539 + MIR SINE MIR 92 196 -66 216 0 0 0 chr4 28584660 28584684 -173743663 + (T)n Simple_repeat Simple_repeat 1 24 0 920 176 0 0 chr4 28584822 28584970 -173743377 + FRAM SINE Alu 8 155 -21 21 36 0 0 chr4 28585411 28585439 -173742908 + AT_rich Low_complexity Low_complexity 1 28 0 1167 150 25 101 chr4 28585755 28586041 -173742306 - AluJo SINE Alu -23 289 26 2143 110 13 0 chr4 28586108 28586408 -173741939 - AluSp SINE Alu -8 305 2 273 254 103 55 chr4 28586610 28586729 -173741618 + MIR SINE MIR 84 215 -47 2586 50 0 0 chr4 28586729 28587029 -173741318 + AluY SINE Alu 1 300 -11 273 254 103 55 chr4 28587029 28587074 -173741273 + MIR SINE MIR 215 256 -6 210 315 0 63 chr4 28588069 28588180 -173740167 - MIR3 SINE MIR -6 202 99 1392 199 63 0 chr4 28588229 28588500 -173739847 - AluJb SINE Alu -20 292 5 1637 187 14 7 chr4 28589771 28590065 -173738282 - AluJo SINE Alu -16 296 1 1101 187 153 0 chr4 28590151 28590354 -173737993 - MER8 DNA MER2_type -3 236 3 26 64 0 0 chr4 28590631 28590678 -173737669 + AT_rich Low_complexity Low_complexity 1 47 0 653 244 0 8 chr4 28590678 28590805 -173737542 - FLAM_A SINE Alu -7 126 1 1606 171 84 0 chr4 28590809 28591083 -173737264 - AluJb SINE Alu -15 297 1 2117 127 7 3 chr4 28591159 28591459 -173736888 - AluSx SINE Alu -11 301 1 329 285 113 26 chr4 28591551 28591702 -173736645 + MIR SINE MIR 81 244 -18 2310 88 3 7 chr4 28592289 28592597 -173735750 - AluSc SINE Alu -2 307 1 2238 91 0 13 chr4 28592732 28593039 -173735308 - AluY SINE Alu -7 304 2 274 208 0 0 chr4 28593470 28593518 -173734829 + FLAM_A SINE Alu 20 67 -65 1123 166 128 34 chr4 28593528 28593602 -173734745 + AluJo SINE Alu 42 108 -204 288 0 0 0 chr4 28593602 28593634 -173734713 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1123 166 128 34 chr4 28593634 28593794 -173734553 + AluJo SINE Alu 108 298 -14 1835 113 46 30 chr4 28594091 28594393 -173733954 - AluSx SINE Alu -5 307 1 1235 180 0 9 chr4 28594806 28595023 -173733324 - AluJo SINE Alu -12 300 86 2470 88 0 0 chr4 28595268 28595575 -173732772 - AluSc SINE Alu -2 307 1 2131 107 0 0 chr4 28595699 28595979 -173732368 - AluSg1 SINE Alu -14 295 16 1227 155 50 5 chr4 28596023 28596242 -173732105 - AluJb SINE Alu -83 229 1 1055 287 118 20 chr4 28596543 28596999 -173731348 + Charlie2a DNA MER1_type 181 681 -2181 260 196 20 0 chr4 28597010 28597061 -173731286 + MIR SINE MIR 211 262 0 640 195 205 68 chr4 28597198 28597426 -173730921 + Charlie2a DNA MER1_type 693 888 -1974 2163 135 0 0 chr4 28597426 28597729 -173730618 - AluSx SINE Alu -9 303 1 640 195 205 68 chr4 28597729 28597885 -173730462 + Charlie2a DNA MER1_type 888 1130 -1732 824 208 19 0 chr4 28597888 28598047 -173730300 - AluJo SINE Alu -30 282 121 2579 206 147 6 chr4 28598077 28598869 -173729478 + Charlie2a DNA MER1_type 1195 2097 -765 240 35 0 0 chr4 28598870 28598899 -173729448 + (TG)n Simple_repeat Simple_repeat 1 29 0 974 158 0 0 chr4 28598899 28599045 -173729302 - AluSg/x SINE Alu -33 279 134 2183 125 3 10 chr4 28599045 28599356 -173728991 - AluSg SINE Alu 0 310 2 373 302 148 45 chr4 28599356 28599414 -173728933 + L1MC/D LINE L1 5515 5566 -2242 2452 138 97 3 chr4 28599414 28599805 -173728542 - MSTA LTR MaLR 0 428 1 373 302 148 45 chr4 28599805 28599948 -173728399 + L1MC/D LINE L1 5566 5737 -2071 1276 181 0 0 chr4 28600363 28600584 -173727763 - AluSq SINE Alu -8 305 85 926 137 0 0 chr4 28600584 28600715 -173727632 - AluY SINE Alu -62 249 119 565 247 53 7 chr4 28600839 28600989 -173727358 + MIR SINE MIR 74 230 -32 2304 96 0 7 chr4 28601103 28601406 -173726941 + AluSx SINE Alu 1 301 -11 398 255 235 0 chr4 28602486 28602635 -173725712 + MIR SINE MIR 66 249 -13 245 272 68 19 chr4 28602637 28602740 -173725607 + MIR SINE MIR 90 197 -65 1775 133 65 4 chr4 28602759 28603038 -173725309 + AluJo SINE Alu 5 300 -12 22 35 0 0 chr4 28603549 28603578 -173724769 + AT_rich Low_complexity Low_complexity 1 29 0 2358 65 0 0 chr4 28603784 28604077 -173724270 - AluY SINE Alu -18 293 1 244 232 139 46 chr4 28604824 28604975 -173723372 - MIR SINE MIR -28 234 70 27 0 0 0 chr4 28605018 28605045 -173723302 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr4 28605083 28605111 -173723236 + AT_rich Low_complexity Low_complexity 1 28 0 45 19 0 0 chr4 28605160 28605212 -173723135 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr4 28605298 28605320 -173723027 + AT_rich Low_complexity Low_complexity 1 22 0 2139 100 7 0 chr4 28605323 28605642 -173722705 + AluY SINE Alu 1 321 0 5750 185 53 34 chr4 28605655 28605998 -173722349 + L1MB8 LINE L1 3686 4021 -2157 2205 121 0 19 chr4 28605998 28606313 -173722034 + AluSq SINE Alu 3 311 -2 5750 185 53 34 chr4 28606313 28608212 -173720135 + L1MB8 LINE L1 4021 6174 -4 881 87 0 9 chr4 28608295 28608410 -173719937 - FLAM_C SINE Alu -25 118 5 731 197 162 0 chr4 28608608 28608750 -173719597 - FRAM SINE Alu -1 165 1 216 119 34 34 chr4 28608761 28608820 -173719527 + (TA)n Simple_repeat Simple_repeat 2 60 0 389 66 16 0 chr4 28608830 28608891 -173719456 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 1763 179 0 0 chr4 28608894 28609174 -173719173 - AluSx SINE Alu -32 280 1 338 287 114 34 chr4 28609244 28609481 -173718866 - MIR SINE MIR 0 262 7 2641 50 0 0 chr4 28610163 28610465 -173717882 - AluY SINE Alu -9 302 1 309 252 158 0 chr4 28610571 28610698 -173717649 + MIR SINE MIR 89 235 -27 290 259 119 75 chr4 28610964 28611165 -173717182 - L2 LINE L2 0 3313 3104 277 290 37 19 chr4 28611546 28611653 -173716694 - MIR SINE MIR -88 174 66 2184 81 26 39 chr4 28611791 28612099 -173716248 + AluSq SINE Alu 1 304 -9 207 200 0 0 chr4 28613923 28613968 -173714379 + T-rich Low_complexity Low_complexity 1 45 0 192 152 0 0 chr4 28614042 28614075 -173714272 + T-rich Low_complexity Low_complexity 1 33 0 2030 120 43 3 chr4 28614523 28614823 -173713524 - AluSx SINE Alu 0 312 1 21 0 0 0 chr4 28614896 28614917 -173713430 + AT_rich Low_complexity Low_complexity 1 21 0 355 305 142 16 chr4 28615037 28615227 -173713120 + MIR SINE MIR 48 261 -1 2235 234 71 10 chr4 28615304 28615822 -173712525 + MLT1F1 LTR MaLR 14 563 -4 332 297 97 32 chr4 28615932 28616087 -173712260 - MIR3 SINE MIR -2 206 42 374 181 30 30 chr4 28616107 28616273 -173712074 + CT-rich Low_complexity Low_complexity 2 167 0 557 69 97 0 chr4 28616410 28616482 -173711865 - AluSg SINE Alu -230 80 2 1184 159 51 5 chr4 28616519 28616733 -173711614 - AluJb SINE Alu -83 229 6 268 325 13 0 chr4 28616891 28616968 -173711379 - MIR SINE MIR -103 105 28 2205 113 0 0 chr4 28616982 28617274 -173711073 + AluSx SINE Alu 14 305 -7 2183 104 3 0 chr4 28617363 28617650 -173710697 + AluSx SINE Alu 9 296 -16 421 305 170 9 chr4 28617656 28618171 -173710176 - L2 LINE L2 0 3313 2591 2427 87 0 3 chr4 28618195 28618505 -173709842 + AluSc SINE Alu 1 309 0 2042 251 169 20 chr4 28618516 28618950 -173709397 - L2 LINE L2 -910 2404 2036 1959 136 4 0 chr4 28618950 28619287 -173709060 + AluSx SINE Alu 1 338 0 2042 251 169 20 chr4 28619287 28619619 -173708728 - L2 LINE L2 -1278 2036 1508 1129 200 0 5 chr4 28619619 28619809 -173708538 - MER5A DNA MER1_type 0 189 1 2042 251 169 20 chr4 28619809 28619849 -173708498 - L2 LINE L2 -1806 1508 1475 235 324 27 0 chr4 28619987 28620061 -173708286 - MIR SINE MIR -103 105 30 1812 145 3 78 chr4 28621155 28621354 -173706993 - AluSx SINE Alu -5 307 141 2285 109 0 3 chr4 28621354 28621667 -173706680 - AluSq SINE Alu -1 312 1 1812 145 3 78 chr4 28621667 28621799 -173706548 - AluSx SINE Alu -171 141 1 2492 56 0 3 chr4 28621848 28622151 -173706196 - AluY SINE Alu -9 302 1 202 202 28 138 chr4 28622291 28622400 -173705947 - L2 LINE L2 -2793 521 425 23 54 0 0 chr4 28622586 28622623 -173705724 + AT_rich Low_complexity Low_complexity 1 37 0 3200 131 86 31 chr4 28623716 28624296 -173704051 - LTR9 LTR ERV1 0 612 1 2480 83 0 10 chr4 28624322 28624636 -173703711 + AluSx SINE Alu 1 311 -1 578 294 216 26 chr4 28624719 28625376 -173702971 - L2 LINE L2 -906 2408 1627 2298 108 3 9 chr4 28625564 28625879 -173702468 - AluSq SINE Alu 0 313 1 225 211 205 39 chr4 28626112 28626268 -173702079 - Charlie7 DNA MER1_type -5 2607 2426 1779 192 0 10 chr4 28626309 28626622 -173701725 - AluJo SINE Alu -2 310 1 1552 155 0 23 chr4 28626724 28626989 -173701358 - AluJo SINE Alu -53 259 1 363 199 20 73 chr4 28627005 28627156 -173701191 - Charlie7 DNA MER1_type -263 2349 2207 1103 249 131 18 chr4 28627177 28627627 -173700720 - Charlie7 DNA MER1_type -881 1731 1231 364 231 58 29 chr4 28627636 28627740 -173700607 + L2 LINE L2 3203 3309 -4 1045 248 40 43 chr4 28627787 28628183 -173700164 - Charlie7 DNA MER1_type -1453 1159 765 249 276 86 26 chr4 28628218 28628334 -173700013 - L2 LINE L2 -280 3033 2911 * 483 265 17 0 chr4 28628320 28628437 -173699910 - L2 LINE L2 -799 2515 2397 447 90 290 10 chr4 28628574 28628674 -173699673 + MER85 DNA T2_type 1 128 -11 21 0 0 0 chr4 28628685 28628706 -173699641 + AT_rich Low_complexity Low_complexity 1 21 0 1496 165 77 0 chr4 28629039 28629299 -173699048 - AluJb SINE Alu -32 280 1 1823 185 51 11 chr4 28629760 28630111 -173698236 - MLT1A1 LTR MaLR 0 365 1 751 134 0 5 chr4 28630136 28630339 -173698008 + AluSx SINE Alu 1 300 -12 490 279 76 6 chr4 28630988 28631160 -173697187 + MIR SINE MIR 32 215 -47 2192 99 7 16 chr4 28631225 28631529 -173696818 - AluSx SINE Alu -11 301 1 2498 51 0 6 chr4 28631535 28631848 -173696499 - AluY SINE Alu 0 311 1 1910 143 17 3 chr4 28632063 28632363 -173695984 - AluSx SINE Alu -8 304 1 537 201 5 147 chr4 28632680 28632864 -173695483 - AluJb SINE Alu -37 275 118 1319 181 92 8 chr4 28632991 28633251 -173695096 + AluJo SINE Alu 1 282 -30 449 287 109 5 chr4 28634286 28634488 -173693859 - L1MC/D LINE L1 -2012 5796 5574 2266 145 54 2 chr4 28635168 28635595 -173692752 - L1MB3 LINE L1 -1 6182 5734 342 0 0 0 chr4 28635634 28635672 -173692675 + (TG)n Simple_repeat Simple_repeat 2 39 0 1747 158 7 40 chr4 28636201 28636505 -173691842 + AluJo SINE Alu 3 296 -16 661 284 97 1 chr4 28636573 28636787 -173691560 - MIR SINE MIR -26 236 2 227 293 13 27 chr4 28636787 28636862 -173691485 - L2 LINE L2 -44 3269 3196 24 32 0 0 chr4 28636862 28636893 -173691454 + AT_rich Low_complexity Low_complexity 1 31 0 232 128 106 0 chr4 28637014 28637061 -173691286 - L1ME LINE L1 -322 5799 5748 189 0 0 0 chr4 28637120 28637141 -173691206 + (T)n Simple_repeat Simple_repeat 1 21 0 203 135 81 0 chr4 28638004 28638041 -173690306 - L2 LINE L2 -1 3312 3273 1990 92 38 89 chr4 28638303 28638618 -173689729 - AluSx SINE Alu -13 299 1 270 56 0 0 chr4 28638753 28638789 -173689558 + (TG)n Simple_repeat Simple_repeat 2 37 0 2129 148 0 0 chr4 28640834 28641144 -173687203 - AluSg SINE Alu 0 310 1 2165 115 0 0 chr4 28641149 28641445 -173686902 - AluSx SINE Alu -16 296 1 21 0 0 0 chr4 28641609 28641630 -173686717 + AT_rich Low_complexity Low_complexity 1 21 0 1137 211 141 14 chr4 28642050 28642419 -173685928 + L1MEc LINE L1 520 935 -5461 883 144 0 22 chr4 28642422 28642561 -173685786 - FLAM_C SINE Alu -7 136 1 661 267 59 10 chr4 28642608 28642810 -173685537 - MER58A DNA MER1_type 0 224 13 399 280 107 33 chr4 28642836 28642866 -173685481 + L1MEc LINE L1 989 1015 -5200 207 0 0 0 chr4 28642866 28642889 -173685458 + (TC)n Simple_repeat Simple_repeat 1 23 0 399 280 107 33 chr4 28642889 28643201 -173685146 + L1MEc LINE L1 1015 1359 -4856 1789 161 0 24 chr4 28643201 28643499 -173684848 + AluSx SINE Alu 1 291 -21 399 280 107 33 chr4 28643499 28643739 -173684608 + L1MEc LINE L1 1359 1580 -4635 323 286 82 10 chr4 28643743 28643841 -173684506 + L1MEc LINE L1 1652 1756 -4640 549 263 16 10 chr4 28643851 28644045 -173684302 + L1MEc LINE L1 3341 3535 -2680 778 255 39 24 chr4 28644152 28644360 -173683987 - MIR SINE MIR -49 213 3 195 129 0 0 chr4 28644583 28644614 -173683733 + (T)n Simple_repeat Simple_repeat 1 31 0 1016 191 0 0 chr4 28644623 28644801 -173683546 - FRAM SINE Alu -2 174 1 189 107 0 0 chr4 28645822 28645850 -173682497 + (TA)n Simple_repeat Simple_repeat 2 29 0 621 182 49 144 chr4 28646062 28646326 -173682021 + L1MC4 LINE L1 6909 7147 -895 389 320 60 0 chr4 28646325 28646553 -173681794 + L1MEc LINE L1 97 461 -5935 * 9146 167 29 9 chr4 28646710 28648627 -173679720 + L1M1 LINE L1 3412 5368 -789 1805 144 29 32 chr4 28648627 28648940 -173679407 + AluJb SINE Alu 1 312 0 9146 167 29 9 chr4 28648940 28648954 -173679393 + L1M1 LINE L1 5368 5380 -777 651 111 96 0 chr4 28648990 28649125 -173679222 + L1M1 LINE L1 5354 5501 -799 830 138 0 0 chr4 28649228 28649344 -173679003 - AluJb SINE Alu -195 117 2 779 285 28 9 chr4 28650347 28650561 -173677786 - MIR SINE MIR -11 251 34 4277 200 26 18 chr4 28650694 28651402 -173676945 + L1MB2 LINE L1 4295 4996 -1175 2234 96 0 3 chr4 28651402 28651695 -173676652 + AluSg SINE Alu 1 292 -18 4277 200 26 18 chr4 28651695 28651999 -173676348 + L1MB2 LINE L1 4996 5296 -875 2448 87 0 13 chr4 28651999 28652309 -173676038 + AluSq SINE Alu 1 306 -7 4277 200 26 18 chr4 28652309 28653160 -173675187 + L1MB2 LINE L1 5296 6170 -1 220 355 80 7 chr4 28653206 28653344 -173675003 + L3b LINE CR1 1428 1575 -8 356 312 40 8 chr4 28653850 28653975 -173674372 - L2 LINE L2 -3 3310 3182 1734 184 23 10 chr4 28655026 28655330 -173673017 - AluJb SINE Alu -4 308 1 1079 157 9 79 chr4 28655663 28655879 -173672468 - AluJo SINE Alu -15 297 97 1689 231 44 0 chr4 28656043 28656541 -173671806 - L1M4c LINE L1 -4591 1793 1274 * 4642 158 44 3 chr4 28656531 28657492 -173670855 - L1M2 LINE L1 -4146 2703 1704 2875 268 29 8 chr4 28657497 28658214 -173670133 - L1M2 LINE L1 -5501 1348 617 339 260 96 34 chr4 28658505 28658651 -173669696 - L1ME4a LINE L1 -2 6119 5965 675 185 7 0 chr4 28658675 28658810 -173669537 - L1PA16 LINE L1 -9 6157 6022 239 311 107 29 chr4 28659897 28660000 -173668347 - MIR SINE MIR -109 153 43 183 80 0 0 chr4 28660009 28660034 -173668313 + (A)n Simple_repeat Simple_repeat 1 25 0 332 232 34 84 chr4 28660135 28660294 -173668053 - MER5A DNA MER1_type -21 168 7 336 212 61 30 chr4 28660366 28660465 -173667882 - MER58A DNA MER1_type 0 143 42 2505 74 0 3 chr4 28660467 28660779 -173667568 + AluSq SINE Alu 3 313 0 251 287 254 24 chr4 28660967 28661389 -173666958 + L2 LINE L2 1627 2145 -1169 2086 146 0 3 chr4 28661692 28662001 -173666346 - AluSx SINE Alu -4 308 1 23 33 0 0 chr4 28662087 28662117 -173666230 + AT_rich Low_complexity Low_complexity 1 30 0 518 323 25 5 chr4 28663134 28663335 -173665012 + MIR SINE MIR 51 255 -7 21 0 0 0 chr4 28665455 28665476 -173662871 + AT_rich Low_complexity Low_complexity 1 21 0 705 253 80 84 chr4 28666590 28667798 -173660549 + L1M4 LINE L1 1147 2475 -4350 2164 121 0 0 chr4 28667798 28668088 -173660259 + AluSp SINE Alu 1 290 -23 705 253 80 84 chr4 28668088 28668308 -173660039 + L1M4 LINE L1 2475 2694 -4131 1746 199 66 93 chr4 28668361 28668435 -173659912 + L1MCa LINE L1 28 102 -5805 1658 182 4 18 chr4 28668435 28668715 -173659632 + AluJo SINE Alu 1 276 -36 537 44 0 0 chr4 28668720 28668788 -173659559 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 1746 199 66 93 chr4 28668788 28669673 -173658674 + L1MCa LINE L1 106 940 -4967 351 133 0 239 chr4 28669682 28669795 -173658552 + Tigger1 DNA MER2_type 24 109 -2309 4483 131 11 11 chr4 28669798 28670553 -173657794 + Tigger1 DNA MER2_type 1432 2186 -232 26 0 0 0 chr4 28670664 28670690 -173657657 + AT_rich Low_complexity Low_complexity 1 26 0 2569 126 24 7 chr4 28672642 28673055 -173655292 + LTR39 LTR ERV1 1 420 -363 2381 186 66 103 chr4 28673055 28673737 -173654610 - LTR8A LTR ERV1 0 727 71 180 0 0 0 chr4 28673898 28673918 -173654429 + (T)n Simple_repeat Simple_repeat 1 20 0 260 258 15 0 chr4 28673922 28673988 -173654359 + MLT1J2 LTR MaLR 97 163 -287 594 325 48 4 chr4 28674233 28674464 -173653883 - MIR SINE MIR -21 241 1 450 53 0 0 chr4 28674701 28674758 -173653589 + (CA)n Simple_repeat Simple_repeat 2 58 0 1847 142 25 0 chr4 28674868 28675143 -173653204 + AluJb SINE Alu 15 296 -16 2231 137 0 0 chr4 28675420 28675727 -173652620 + AluSx SINE Alu 1 307 -5 5674 33 6 0 chr4 28676419 28677084 -173651263 + L1PA4 LINE L1 5487 6155 0 578 194 82 24 chr4 28677373 28677543 -173650804 - MER112 DNA MER1_type 0 260 81 335 256 141 73 chr4 28677922 28678113 -173650234 - MER112 DNA MER1_type -1 259 56 273 29 0 0 chr4 28678238 28678272 -173650075 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 2073 124 13 3 chr4 28678387 28678685 -173649662 - AluY SINE Alu -10 301 1 2251 104 0 22 chr4 28678809 28679125 -173649222 + AluSg SINE Alu 1 309 -1 1801 152 45 3 chr4 28679166 28679455 -173648892 + AluSx SINE Alu 1 301 -11 346 287 11 0 chr4 28680978 28681072 -173647275 + L2 LINE L2 3218 3312 -1 415 125 16 0 chr4 28682765 28682829 -173645518 + AluS SINE Alu 3 67 -244 232 244 0 0 chr4 28683084 28683129 -173645218 + (TG)n Simple_repeat Simple_repeat 2 46 0 1140 164 49 4 chr4 28684534 28684613 -173643734 - L1MB1 LINE L1 -1 6167 6093 276 30 0 0 chr4 28684613 28684646 -173643701 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 297 0 0 0 chr4 28684645 28684678 -173643669 + (CA)n Simple_repeat Simple_repeat 2 34 0 1140 164 49 4 chr4 28684646 28684823 -173643524 - L1MB1 LINE L1 -75 6093 5933 2172 149 30 25 chr4 28684850 28685212 -173643135 - THE1B LTR MaLR 0 364 1 270 297 0 0 chr4 28685551 28685615 -173642732 - MLT1L LTR MaLR -205 410 347 318 246 26 22 chr4 28686004 28686125 -173642222 - MLT1H LTR MaLR -268 162 16 457 280 17 0 chr4 28686721 28686839 -173641508 + MIR3 SINE MIR 64 183 -25 627 272 134 22 chr4 28688383 28688696 -173639651 - MER7A DNA MER2_type 0 346 1 9484 206 23 3 chr4 28688799 28690818 -173637529 + L1 LINE L1 2261 4318 -1828 17346 76 15 5 chr4 28690919 28693304 -173635043 + L1P LINE L1 1523 3930 -2216 1741 169 0 18 chr4 28693550 28693823 -173634524 + AluJb SINE Alu 2 269 -43 914 171 131 0 chr4 28694323 28694498 -173633849 - MER20 DNA MER1_type 0 219 22 208 315 0 0 chr4 28695138 28695192 -173633155 + (TATG)n Simple_repeat Simple_repeat 3 56 0 594 178 76 8 chr4 28695378 28695496 -173632851 - LTR39 LTR ERV1 0 783 658 288 174 0 0 chr4 28695654 28695700 -173632647 - MER20 DNA MER1_type 0 219 174 * 2116 139 40 32 chr4 28695692 28696065 -173632282 - LTR39 LTR ERV1 -158 625 250 898 117 41 21 chr4 28696064 28696209 -173632138 - LTR39 LTR ERV1 -635 148 1 * 1502 225 63 3 chr4 28696231 28696533 -173631814 + MLT1A1 LTR MaLR 4 323 -42 670 159 212 69 chr4 28697279 28697468 -173630879 + MER20 DNA MER1_type 1 216 -3 1262 174 28 0 chr4 28698512 28698724 -173629623 + MER20 DNA MER1_type 2 219 0 1065 244 25 11 chr4 28698934 28699208 -173629139 - L1MC4 LINE L1 -522 7520 7243 325 176 96 166 chr4 28700380 28700491 -173627856 - MSTB2 LTR MaLR -267 190 98 180 0 0 0 chr4 28700491 28700511 -173627836 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 325 176 96 166 chr4 28700511 28700598 -173627749 - MSTB2 LTR MaLR -359 98 6 368 310 97 13 chr4 28700772 28700927 -173627420 - MLT1K LTR MaLR -319 269 102 256 275 118 90 chr4 28700964 28701142 -173627205 - L2 LINE L2 -98 3174 2992 444 221 0 0 chr4 28701301 28701378 -173626969 + L1MC/D LINE L1 5512 5588 -2220 26 0 0 0 chr4 28701378 28701404 -173626943 + AT_rich Low_complexity Low_complexity 1 26 0 5713 30 0 3 chr4 28701640 28702791 -173625556 - L1PA4 LINE L1 -234 5921 4774 819 239 21 50 chr4 28702790 28703094 -173625253 + L1P1 LINE L1 5574 5872 -283 * 667 249 61 58 chr4 28703094 28703497 -173624850 + LTR33A LTR ERVL 2 436 -87 256 314 0 20 chr4 28703569 28703671 -173624676 - L2 LINE L2 -972 2342 2243 2263 96 0 63 chr4 28705249 28705581 -173622766 - AluSx SINE Alu -1 311 1 2260 92 20 3 chr4 28705816 28706109 -173622238 - AluSc SINE Alu -11 298 1 237 286 67 19 chr4 28706717 28706822 -173621525 + MER5A DNA MER1_type 80 189 0 302 171 11 57 chr4 28706867 28706955 -173621392 - L2 LINE L2 -4 3268 3185 207 231 115 0 chr4 28706979 28707057 -173621290 + MIR3 SINE MIR 112 198 -10 5809 139 33 34 chr4 28707308 28708490 -173619857 + pTR5 LTR ERV1 743 2033 -405 239 200 0 0 chr4 28708493 28708543 -173619804 + LTR30 LTR ERV1 555 604 -118 449 316 60 0 chr4 28709783 28710001 -173618346 + MIR SINE MIR 31 261 -1 258 285 30 90 chr4 28710176 28710376 -173617971 - L2 LINE L2 0 3313 3126 2273 97 0 0 chr4 28710461 28710749 -173617598 + AluY SINE Alu 1 288 -23 1052 208 28 0 chr4 28710846 28711058 -173617289 + MER20 DNA MER1_type 2 219 0 813 240 59 18 chr4 28711539 28711760 -173616587 + MIR SINE MIR 28 257 -5 3033 214 128 16 chr4 28711798 28712636 -173615711 + MER52A LTR ERV1 1 932 -823 496 88 15 0 chr4 28712737 28712805 -173615542 - AluS SINE Alu -243 70 2 2474 199 42 40 chr4 28713099 28713722 -173614625 + MLT1E3 LTR MaLR 1 624 0 2366 71 0 14 chr4 28714349 28714676 -173613671 - AluY SINE Alu 0 311 1 1675 114 62 102 chr4 28715087 28715411 -173612936 - AluYb8 SINE Alu -7 311 1 214 250 0 0 chr4 28716419 28716463 -173611884 + GA-rich Low_complexity Low_complexity 5 48 0 218 393 37 7 chr4 28716550 28716685 -173611662 - MIR SINE MIR -110 152 14 1473 220 21 52 chr4 28717852 28718234 -173610113 - MLT1A2 LTR MaLR -4 370 1 412 310 69 5 chr4 28718705 28718908 -173609439 + MIR SINE MIR 29 244 -18 540 68 0 0 chr4 28719628 28719701 -173608646 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 368 277 111 101 chr4 28720580 28720887 -173607460 + MER102b DNA MER1_type 19 339 -2 1507 178 57 32 chr4 28721063 28721416 -173606931 - MLT1A1 LTR MaLR -2 363 1 546 122 0 0 chr4 28721908 28722006 -173606341 + (GGAA)n Simple_repeat Simple_repeat 1 98 0 251 254 28 49 chr4 28722133 28722275 -173606072 - Charlie7 DNA MER1_type -4 2608 2470 262 239 141 70 chr4 28722341 28722483 -173605864 + LTR16A LTR ERVL 117 268 -182 333 234 32 21 chr4 28722583 28722677 -173605670 - MIR SINE MIR -66 196 102 1036 170 36 18 chr4 28722936 28723160 -173605187 + L1MB2 LINE L1 5944 6171 0 1811 130 37 4 chr4 28724048 28724317 -173604030 - AluSx SINE Alu -33 279 5 354 328 47 31 chr4 28725397 28725525 -173602822 - L2 LINE L2 -5 3267 3138 22 35 0 0 chr4 28725539 28725568 -173602779 + AT_rich Low_complexity Low_complexity 1 29 0 2422 76 0 3 chr4 28725897 28726198 -173602149 - AluY SINE Alu -11 300 1 216 0 0 0 chr4 28726216 28726240 -173602107 + (A)n Simple_repeat Simple_repeat 1 24 0 381 131 0 0 chr4 28726634 28726695 -173601652 + (A)n Simple_repeat Simple_repeat 1 61 0 1301 76 0 0 chr4 28727535 28727692 -173600655 - AluSq SINE Alu -156 157 1 1792 167 3 10 chr4 28728679 28728972 -173599375 - AluJo SINE Alu -21 291 1 2157 116 0 0 chr4 28729073 28729365 -173598982 - AluY SINE Alu -19 292 1 189 216 0 0 chr4 28729494 28729531 -173598816 + L2 LINE L2 3261 3297 -16 4420 235 100 26 chr4 28729788 28730713 -173597634 + L1ME1 LINE L1 3544 4400 -1944 1740 182 0 7 chr4 28730713 28731004 -173597343 + AluJb SINE Alu 1 289 -23 4420 235 100 26 chr4 28731004 28731753 -173596594 + L1ME1 LINE L1 4400 5441 -903 1382 184 164 10 chr4 28731753 28732057 -173596290 - MLT1A1 LTR MaLR 0 365 15 2175 237 49 24 chr4 28732128 28732765 -173595582 + L1ME1 LINE L1 5509 6161 -5 243 67 0 0 chr4 28732856 28732922 -173595425 - AluSq SINE Alu 0 316 251 1221 110 6 0 chr4 28732923 28733087 -173595260 - AluSq SINE Alu -148 165 1 1894 163 0 0 chr4 28733314 28733615 -173594732 - AluSx SINE Alu -11 301 1 2392 67 0 7 chr4 28733966 28734266 -173594081 - AluY SINE Alu -13 298 1 193 308 0 64 chr4 28734749 28734827 -173593520 - L3 LINE CR1 -75 1502 1430 1498 212 27 0 chr4 28735113 28735406 -173592941 + AluJo SINE Alu 1 301 -11 419 211 22 0 chr4 28735440 28735530 -173592817 + MSTB1 LTR MaLR 1 92 -340 * 704 175 147 0 chr4 28735525 28735702 -173592645 + MSTB1 LTR MaLR 193 395 -37 669 226 42 12 chr4 28737462 28737567 -173590780 - MER58C DNA MER1_type -2205 215 102 2275 102 0 0 chr4 28737567 28737870 -173590477 - AluY SINE Alu -7 304 2 669 226 42 12 chr4 28737870 28737932 -173590415 - MER58C DNA MER1_type -2318 102 43 216 0 0 0 chr4 28738009 28738033 -173590314 + (TG)n Simple_repeat Simple_repeat 1 24 0 2083 130 0 0 chr4 28738558 28738850 -173589497 - AluSg SINE Alu -18 292 1 1943 113 46 0 chr4 28739623 28739905 -173588442 - AluSx SINE Alu -5 307 13 24 53 0 0 chr4 28740075 28740113 -173588234 + AT_rich Low_complexity Low_complexity 1 38 0 810 230 22 11 chr4 28740206 28740384 -173587963 + MER20 DNA MER1_type 39 218 -1 202 194 0 0 chr4 28740807 28740843 -173587504 + MIR SINE MIR 217 252 -10 198 252 0 0 chr4 28741137 28741181 -173587166 - MIR SINE MIR -61 147 110 367 217 298 0 chr4 28741266 28741427 -173586920 + MIR SINE MIR 37 245 -17 2294 106 3 0 chr4 28741814 28742126 -173586221 - AluSp SINE Alu 0 313 1 370 350 38 6 chr4 28742680 28742840 -173585507 + L2 LINE L2 2178 2342 -972 6063 86 37 53 chr4 28743320 28744311 -173584036 - L1PA14 LINE L1 -1 6160 5162 402 228 26 44 chr4 28744535 28744649 -173583698 + MIR SINE MIR 137 248 -14 373 302 25 31 chr4 28745030 28745189 -173583158 - MIR SINE MIR -49 213 56 29 0 0 0 chr4 28745526 28745555 -173582792 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 28746003 28746024 -173582323 + AT_rich Low_complexity Low_complexity 1 21 0 2175 152 24 34 chr4 28746399 28746934 -173581413 - LTR10E LTR ERV1 -43 590 1 21 0 0 0 chr4 28747378 28747399 -173580948 + AT_rich Low_complexity Low_complexity 1 21 0 1788 133 91 0 chr4 28747822 28748107 -173580240 - AluJb SINE Alu -1 311 1 422 331 36 57 chr4 28748525 28748773 -173579574 - MIR SINE MIR -16 246 4 568 182 15 38 chr4 28749223 28749355 -173578992 + FLAM_C SINE Alu 1 129 -4 2393 92 0 0 chr4 28749433 28749736 -173578611 - AluSg SINE Alu -7 303 1 817 126 0 47 chr4 28751067 28751219 -173577128 + FLAM_C SINE Alu 1 146 0 2497 49 0 26 chr4 28751764 28752070 -173576277 + AluY SINE Alu 1 298 -13 725 180 190 15 chr4 28752119 28752195 -173576152 + MER46A DNA MER2_type 2 63 -2668 1940 138 4 0 chr4 28752195 28752470 -173575877 - AluSx SINE Alu -36 276 1 725 180 190 15 chr4 28752470 28752593 -173575754 + MER46A DNA MER2_type 63 236 0 1073 244 123 71 chr4 28753030 28753510 -173574837 + L2 LINE L2 2809 3313 0 419 204 76 23 chr4 28753771 28753903 -173574444 + Charlie8 DNA MER1_type 46 184 -2233 320 297 91 12 chr4 28753949 28754114 -173574233 + Charlie8 DNA MER1_type 295 472 -1945 1800 168 10 0 chr4 28754115 28754407 -173573940 - AluJb SINE Alu -17 295 1 1231 200 122 15 chr4 28756198 28756468 -173571879 - AluJo SINE Alu -13 299 1 21 36 0 0 chr4 28757471 28757499 -173570848 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr4 28757915 28757950 -173570397 + AT_rich Low_complexity Low_complexity 1 35 0 1877 174 3 0 chr4 28758906 28759216 -173569131 - AluJb SINE Alu -1 311 1 324 267 48 91 chr4 28760839 28761049 -173567298 + MER20 DNA MER1_type 2 202 -17 2151 101 7 7 chr4 28761243 28761541 -173566806 - AluSx SINE Alu -14 298 1 525 218 99 149 chr4 28761577 28762431 -173565916 - L1MC5 LINE L1 -107 7854 7043 200 200 0 0 chr4 28762488 28762528 -173565819 + T-rich Low_complexity Low_complexity 1 40 0 210 91 0 0 chr4 28762536 28762569 -173565778 + (TTG)n Simple_repeat Simple_repeat 2 34 0 384 240 112 63 chr4 28762627 28763046 -173565301 - L1MC5 LINE L1 -48 7913 7342 1149 183 249 22 chr4 28763047 28763420 -173564927 - MER31B LTR ERV1 -1 660 5 1200 173 49 124 chr4 28765241 28765548 -173562799 + AluJb SINE Alu 1 284 -28 1834 263 222 27 chr4 28766471 28767799 -173560548 - L2 LINE L2 -84 3229 1636 312 242 141 0 chr4 28767974 28768073 -173560274 + MIR SINE MIR 33 145 -63 581 247 146 6 chr4 28768225 28768383 -173559964 + MER5A DNA MER1_type 10 189 0 312 27 0 0 chr4 28771122 28771159 -173557188 + (A)n Simple_repeat Simple_repeat 1 37 0 2128 119 0 7 chr4 28775308 28775603 -173552744 - AluSx SINE Alu -19 293 1 23 0 0 0 chr4 28775845 28775868 -173552479 + AT_rich Low_complexity Low_complexity 1 23 0 1075 106 182 20 chr4 28777023 28777221 -173551126 - MER30 DNA MER1_type 0 230 1 1874 141 3 16 chr4 28778510 28778816 -173549531 - AluSx SINE Alu -10 302 1 1672 175 0 16 chr4 28778816 28779119 -173549228 - AluJb SINE Alu -14 298 1 214 193 35 18 chr4 28779207 28779264 -173549083 - L2 LINE L2 -83 3230 3173 851 209 49 29 chr4 28779900 28780144 -173548203 - L2 LINE L2 -925 2389 2141 326 247 0 34 chr4 28780171 28780260 -173548087 - MER5A DNA MER1_type -95 94 9 567 230 164 0 chr4 28781543 28781695 -173546652 + L2 LINE L2 1966 2142 -1172 1324 262 111 91 chr4 28781892 28783003 -173545344 + L2 LINE L2 2158 3311 -2 301 268 104 56 chr4 28783229 28783498 -173544849 - HAL1 LINE L1 -223 2284 2003 370 275 33 0 chr4 28783540 28783631 -173544716 - L2 LINE L2 -25 3288 3195 525 271 77 51 chr4 28783805 28784196 -173544151 - HAL1 LINE L1 -1045 1462 1062 1651 133 12 0 chr4 28784259 28784508 -173543839 - MER67A LTR ERV1 -291 252 1 2818 211 102 16 chr4 28784600 28785446 -173542901 + L1PB3 LINE L1 2287 3206 -3656 946 114 0 0 chr4 28785468 28785600 -173542747 + AluSp SINE Alu 1 132 -181 5401 153 64 38 chr4 28785620 28787531 -173540816 + L1PB3 LINE L1 4915 6869 -1 567 301 93 25 chr4 28787826 28788027 -173540320 - MIR SINE MIR -36 226 17 2307 70 0 0 chr4 28788435 28788722 -173539625 + L1PA8 LINE L1 5866 6152 -20 654 185 123 0 chr4 28788844 28789006 -173539341 - MER5A DNA MER1_type -4 185 4 192 77 0 0 chr4 28789112 28789138 -173539209 + (A)n Simple_repeat Simple_repeat 1 26 0 313 306 48 0 chr4 28789238 28789362 -173538985 + MIR3 SINE MIR 78 207 -1 585 306 35 15 chr4 28789396 28789595 -173538752 - MIR SINE MIR 0 262 60 358 285 96 56 chr4 28789628 28789859 -173538488 + MIR SINE MIR 21 256 -6 1197 119 11 0 chr4 28791371 28791548 -173536799 - AluSg/x SINE Alu -1 309 131 667 212 29 0 chr4 28791617 28791754 -173536593 + L1ME1 LINE L1 5647 5787 -379 1468 240 113 18 chr4 28791755 28792189 -173536158 + MLT1D LTR MaLR 1 475 -30 1281 239 53 6 chr4 28792194 28792549 -173535798 + L1ME1 LINE L1 5787 6158 -8 972 333 70 23 chr4 28793267 28793823 -173534524 - ERVL LTR ERVL -854 4910 4329 2214 98 0 19 chr4 28793855 28794171 -173534176 - AluSq SINE Alu -1 312 3 757 265 67 52 chr4 28794208 28794536 -173533811 - LTR16C LTR ERVL -1 490 158 784 221 47 21 chr4 28795024 28795214 -173533133 + MIR SINE MIR 18 212 -50 725 269 175 44 chr4 28795221 28795586 -173532761 + L2 LINE L2 2897 3309 -4 228 135 0 0 chr4 28795696 28795733 -173532614 + (CATA)n Simple_repeat Simple_repeat 4 40 0 213 121 0 0 chr4 28796230 28796263 -173532084 + (CA)n Simple_repeat Simple_repeat 1 33 0 288 0 0 0 chr4 28796542 28796574 -173531773 + (T)n Simple_repeat Simple_repeat 1 32 0 2101 113 0 10 chr4 28796718 28797020 -173531327 - AluSx SINE Alu -13 299 1 210 271 260 0 chr4 28797334 28797430 -173530917 - L2 LINE L2 -3 3310 3190 2137 105 0 0 chr4 28798254 28798549 -173529798 + AluSg SINE Alu 1 295 -15 319 190 141 124 chr4 28798581 28798651 -173529696 - MER5A DNA MER1_type -53 136 62 1888 144 0 25 chr4 28798651 28798970 -173529377 - AluSx SINE Alu -1 311 1 319 190 141 124 chr4 28798970 28799020 -173529327 - MER5A DNA MER1_type -127 62 14 464 266 62 62 chr4 28799124 28799365 -173528982 - MIR SINE MIR -9 253 13 733 168 0 8 chr4 28799425 28799544 -173528803 + FLAM_C SINE Alu 11 128 -15 232 377 13 0 chr4 28799545 28799622 -173528725 - L2 LINE L2 -35 3278 3201 319 296 20 0 chr4 28799675 28799773 -173528574 + L2 LINE L2 2530 2629 -685 838 290 22 4 chr4 28799864 28800095 -173528252 + MIR SINE MIR 4 238 -24 525 278 75 28 chr4 28800120 28800375 -173527972 + L2 LINE L2 3047 3313 0 247 162 116 93 chr4 28801318 28801430 -173526917 - MLT1J2 LTR MaLR 0 450 285 413 147 0 27 chr4 28801540 28801615 -173526732 - MLT1H LTR MaLR -341 208 136 229 139 0 0 chr4 28803098 28803134 -173525213 - L2 LINE L2 -8 3305 3270 1368 103 0 0 chr4 28803232 28803417 -173524930 - AluSg/x SINE Alu -16 296 112 525 307 73 18 chr4 28803442 28803660 -173524687 - MIR SINE MIR -5 257 28 2278 98 0 0 chr4 28804107 28804413 -173523934 + AluSx SINE Alu 1 306 -6 501 295 108 6 chr4 28804448 28804614 -173523733 + MER5A DNA MER1_type 1 183 -6 351 280 93 9 chr4 28805078 28805185 -173523162 + MIR SINE MIR 51 166 -96 446 175 18 57 chr4 28805304 28805475 -173522872 + MLT1D LTR MaLR 3 235 -270 976 132 0 22 chr4 28805485 28805531 -173522816 + (GGAGAA)n Simple_repeat Simple_repeat 1 222 0 976 132 0 22 chr4 28805531 28805713 -173522634 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 1089 239 62 26 chr4 28805801 28806107 -173522240 + MLT1D LTR MaLR 181 497 -8 485 185 11 0 chr4 28806385 28806477 -173521870 + MER53 DNA DNA 96 188 -1 999 174 0 0 chr4 28806891 28807058 -173521289 - MLT1B LTR MaLR -42 348 182 261 313 0 0 chr4 28807199 28807266 -173521081 - MER63B DNA MER1_type 0 435 369 1381 166 0 17 chr4 28807291 28807625 -173520722 - MSTA LTR MaLR -2 426 1 1098 206 28 32 chr4 28807626 28807879 -173520468 - MER63B DNA MER1_type -167 269 18 351 283 10 10 chr4 28807882 28807981 -173520366 - MLT1L LTR MaLR -390 225 127 2013 160 70 11 chr4 28808014 28808388 -173519959 - MSTD LTR MaLR 0 396 1 216 275 145 14 chr4 28809029 28809098 -173519249 - MIR SINE MIR -1 261 184 315 0 0 0 chr4 28809376 28809411 -173518936 + (TC)n Simple_repeat Simple_repeat 2 36 0 1640 194 36 17 chr4 28809757 28810113 -173518234 + MLT1A1 LTR MaLR 3 365 0 23 68 0 0 chr4 28810586 28810630 -173517717 + AT_rich Low_complexity Low_complexity 1 44 0 4420 124 5 0 chr4 28810655 28811292 -173517055 + L1PA16 LINE L1 5519 6158 -8 204 321 186 14 chr4 28811311 28811451 -173516896 - MIR SINE MIR -86 176 13 203 354 62 8 chr4 28811473 28811603 -173516744 - L2 LINE L2 -849 2465 2329 1526 175 15 4 chr4 28811897 28812171 -173516176 + AluJo SINE Alu 1 277 -35 33 25 0 0 chr4 28812171 28812211 -173516136 + AT_rich Low_complexity Low_complexity 1 40 0 515 253 61 0 chr4 28812459 28812618 -173515729 + MIR SINE MIR 36 205 -57 2299 77 3 3 chr4 28812757 28813056 -173515291 - AluSp SINE Alu -14 299 1 1742 164 13 7 chr4 28813314 28813624 -173514723 - AluJo SINE Alu 0 312 1 363 366 15 8 chr4 28813681 28813812 -173514535 - MIR SINE MIR -61 147 16 196 339 0 15 chr4 28814054 28814119 -173514228 - L2 LINE L2 0 3272 3209 3013 123 25 53 chr4 28814782 28815052 -173513295 + MER41E LTR ERV1 1 277 -235 2298 97 0 0 chr4 28815052 28815363 -173512984 + AluSq SINE Alu 1 311 -2 3013 123 25 53 chr4 28815363 28815457 -173512890 + MER41E LTR ERV1 277 372 -140 2368 70 0 0 chr4 28815457 28815757 -173512590 - AluY SINE Alu -11 300 1 3013 123 25 53 chr4 28815757 28815918 -173512429 + MER41E LTR ERV1 372 512 0 1828 140 6 37 chr4 28818388 28818709 -173509638 + AluJb SINE Alu 1 311 -1 236 202 24 60 chr4 28819285 28819369 -173508978 + CT-rich Low_complexity Low_complexity 2 82 0 21 36 0 0 chr4 28820114 28820142 -173508205 + AT_rich Low_complexity Low_complexity 1 28 0 722 274 27 39 chr4 28821382 28821641 -173506706 - MIR SINE MIR -3 259 4 392 243 14 93 chr4 28822253 28822393 -173505954 - MIR SINE MIR -81 181 53 839 145 0 0 chr4 28822516 28822633 -173505714 + FLAM_C SINE Alu 2 118 -15 2342 89 0 6 chr4 28822665 28822979 -173505368 + AluSp SINE Alu 1 312 -1 565 235 43 31 chr4 28823062 28823224 -173505123 + MIR SINE MIR 65 228 -34 225 244 148 15 chr4 28824216 28824351 -173503996 + L1ME4a LINE L1 5966 6118 -3 1977 139 0 0 chr4 28824387 28824688 -173503659 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr4 28824720 28824742 -173503605 + AT_rich Low_complexity Low_complexity 1 22 0 365 137 123 22 chr4 28825427 28825516 -173502831 - L1MB5 LINE L1 0 6180 6076 665 311 19 9 chr4 28826066 28826278 -173502069 + MIR SINE MIR 48 261 -1 210 244 0 0 chr4 28828371 28828412 -173499935 + (CA)n Simple_repeat Simple_repeat 2 42 0 218 235 0 0 chr4 28828798 28828849 -173499498 - L2 LINE L2 -7 3306 3256 347 241 53 132 chr4 28828881 28828961 -173499386 - L2 LINE L2 -173 3140 3055 1864 137 14 0 chr4 28828961 28829239 -173499108 - AluJo SINE Alu -30 282 1 347 241 53 132 chr4 28829239 28829499 -173498848 - L2 LINE L2 -258 3055 2827 244 355 0 11 chr4 28829904 28829997 -173498350 + MIR SINE MIR 14 105 -157 441 54 0 0 chr4 28829997 28830053 -173498294 + (TTCC)n Simple_repeat Simple_repeat 4 59 0 719 114 9 53 chr4 28830588 28830727 -173497620 + FLAM_C SINE Alu 13 146 0 679 168 0 47 chr4 28831278 28831427 -173496920 + AluSc SINE Alu 6 147 -162 279 79 0 0 chr4 28832119 28832157 -173496190 + (TTCC)n Simple_repeat Simple_repeat 2 39 0 1971 162 3 0 chr4 28832157 28832466 -173495881 - AluSx SINE Alu -2 310 1 274 241 203 15 chr4 28832466 28832599 -173495748 + MIR SINE MIR 92 249 -13 219 69 0 0 chr4 28833153 28833182 -173495165 + (TTCCC)n Simple_repeat Simple_repeat 1 29 0 251 346 57 31 chr4 28833313 28833472 -173494875 - MER5A DNA MER1_type -10 179 17 428 254 136 31 chr4 28833510 28833718 -173494629 + MIR SINE MIR 35 262 0 216 277 77 15 chr4 28833789 28833854 -173494493 + L2 LINE L2 3203 3271 -1 2709 93 3 6 chr4 28833971 28834336 -173494011 + THE1B LTR MaLR 1 364 0 296 328 38 8 chr4 28834439 28834570 -173493777 - L2 LINE L2 -1 3271 3137 21 36 0 0 chr4 28834963 28834991 -173493356 + AT_rich Low_complexity Low_complexity 1 28 0 2206 106 3 7 chr4 28834991 28835305 -173493042 + AluSp SINE Alu 1 313 0 295 297 26 73 chr4 28835855 28836047 -173492300 + MIR SINE MIR 68 250 -12 228 291 27 18 chr4 28836058 28836168 -173492179 - L1ME4a LINE L1 -55 6066 5956 2353 95 0 0 chr4 28836459 28836753 -173491594 - AluSg SINE Alu -16 294 1 2148 102 0 27 chr4 28837021 28837314 -173491033 - AluSx SINE Alu -5 307 23 1373 204 38 14 chr4 28837331 28837620 -173490727 - AluJo SINE Alu -11 301 6 1162 117 0 0 chr4 28837741 28837895 -173490452 - AluSg/x SINE Alu -25 287 134 183 42 0 0 chr4 28837895 28837919 -173490428 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2054 95 11 35 chr4 28837919 28838204 -173490143 - AluSx SINE Alu -28 284 7 555 292 53 5 chr4 28838348 28838557 -173489790 - L2 LINE L2 -10 3303 3085 1459 241 60 62 chr4 28838730 28839087 -173489260 + MLT1J LTR MaLR 1 359 -152 2170 109 0 7 chr4 28839087 28839400 -173488947 - AluSx SINE Alu 0 311 1 1459 241 60 62 chr4 28839400 28839539 -173488808 + MLT1J LTR MaLR 359 497 -14 869 160 23 0 chr4 28839761 28839892 -173488455 - AluJb SINE Alu -178 134 1 1911 172 0 0 chr4 28839904 28840200 -173488147 - AluSx SINE Alu -16 296 1 231 305 126 18 chr4 28840386 28840553 -173487794 + L2 LINE L2 2550 2734 -580 3603 50 9 7 chr4 28840913 28841356 -173486991 - MLT2A1 LTR ERVL 0 444 1 220 258 31 31 chr4 28841356 28841453 -173486894 + L2 LINE L2 3158 3254 -59 217 231 64 13 chr4 28841467 28841545 -173486802 - MIR SINE MIR -76 186 105 250 317 40 0 chr4 28841978 28842079 -173486268 + MIR SINE MIR 103 207 -55 392 237 273 0 chr4 28843602 28843741 -173484606 - MIR SINE MIR -2 260 84 2127 171 8 3 chr4 28843799 28844162 -173484185 + MLT1A1 LTR MaLR 1 365 0 322 105 15 59 chr4 28844341 28844436 -173483911 + AluSx SINE Alu 1 47 -256 1666 105 22 49 chr4 28844457 28844724 -173483623 + AluSx SINE Alu 42 301 -11 986 288 72 21 chr4 28844944 28845133 -173483214 - L1MC4a LINE L1 -743 5403 5677 490 112 0 101 chr4 28845133 28845222 -173483125 + MADE1 DNA Mariner 1 80 0 986 288 72 21 chr4 28845222 28845726 -173482621 - L1MC4a LINE L1 -468 5678 5201 550 298 58 5 chr4 28845741 28845946 -173482401 + MIR SINE MIR 47 262 0 683 160 23 0 chr4 28846714 28846889 -173481458 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 2283 189 70 36 chr4 28847028 28847202 -173481145 - L1MD2 LINE L1 -213 6146 5979 1537 167 14 54 chr4 28847202 28847529 -173480818 - AluJo SINE Alu 0 315 1 2283 189 70 36 chr4 28847529 28847912 -173480435 - L1MD2 LINE L1 -380 5979 5568 2077 116 3 3 chr4 28848226 28848531 -173479816 + AluSp SINE Alu 1 305 0 1738 163 10 23 chr4 28850195 28850501 -173477846 - AluJb SINE Alu -10 302 1 278 281 29 65 chr4 28851136 28851275 -173477072 + MIR SINE MIR 1 134 -128 728 290 98 25 chr4 28851599 28851916 -173476431 - LTR16B LTR ERVL 0 464 125 381 58 0 0 chr4 28852238 28852290 -173476057 + (TA)n Simple_repeat Simple_repeat 1 52 0 5355 148 26 3 chr4 28852290 28853207 -173475140 - L1MA5 LINE L1 -22 6278 5341 224 394 0 0 chr4 28853307 28853401 -173474946 - L2 LINE L2 -21 3292 3199 446 261 97 23 chr4 28853596 28853772 -173474575 - MIR SINE MIR -56 206 18 1609 135 71 7 chr4 28854245 28854531 -173473816 - L1MC3 LINE L1 -81 7704 5937 351 274 42 0 chr4 28854756 28854851 -173473496 - MIR SINE MIR -76 186 88 235 371 60 0 chr4 28854915 28855031 -173473316 + MLT1K LTR MaLR 30 152 -436 896 117 22 0 chr4 28855454 28855591 -173472756 + L1PB1 LINE L1 6012 6151 0 356 350 38 54 chr4 28855678 28855918 -173472429 - L3 LINE CR1 -1300 277 42 854 299 37 45 chr4 28856587 28856893 -173471454 - L1MC4a LINE L1 -1983 5825 5523 2314 102 0 7 chr4 28856893 28857197 -173471150 + AluSq SINE Alu 1 302 -11 854 299 37 45 chr4 28857197 28857452 -173470895 - L1MC4a LINE L1 -2285 5523 5268 2181 106 33 3 chr4 28857654 28857955 -173470392 - AluSx SINE Alu -2 310 1 785 269 13 26 chr4 28858194 28858428 -173469919 + MIR SINE MIR 1 231 -31 2413 88 3 0 chr4 28858501 28858797 -173469550 - AluSp SINE Alu -16 297 1 464 283 46 13 chr4 28859451 28859603 -173468744 + MLT1J2 LTR MaLR 11 167 -283 1843 193 26 48 chr4 28859619 28860034 -173468313 + MLT2D LTR ERVL 1 406 -8 336 269 64 64 chr4 28860079 28860235 -173468112 + MLT1J2 LTR MaLR 252 407 -43 1928 194 56 25 chr4 28860926 28861375 -173466972 + MLT1C LTR MaLR 1 463 -4 246 271 0 0 chr4 28861425 28861484 -173466863 - MIR SINE MIR -110 98 40 22 35 0 0 chr4 28862150 28862179 -173466168 + AT_rich Low_complexity Low_complexity 1 29 0 1180 277 52 54 chr4 28862246 28862747 -173465600 - LTR67 LTR ERVL 0 557 58 342 0 0 0 chr4 28862751 28862789 -173465558 + (CA)n Simple_repeat Simple_repeat 2 39 0 725 157 17 0 chr4 28864143 28864258 -173464089 - FLAM_A SINE Alu -13 129 13 750 271 135 54 chr4 28864312 28864755 -173463592 + MLT1G1 LTR MaLR 110 588 -7 424 310 51 0 chr4 28865309 28865467 -173462880 - MIR SINE MIR -74 188 23 2240 108 0 3 chr4 28865631 28865927 -173462420 + AluSp SINE Alu 1 295 -18 258 105 0 0 chr4 28865929 28865967 -173462380 + (TA)n Simple_repeat Simple_repeat 2 39 0 659 279 25 37 chr4 28865995 28866239 -173462108 + MIR SINE MIR 12 252 -10 808 169 0 0 chr4 28866807 28866943 -173461404 - MER82 DNA MER2_type -437 216 81 275 288 42 8 chr4 28866944 28867062 -173461285 + L1ME4a LINE L1 5998 6119 -2 2354 192 22 16 chr4 28867719 28868162 -173460185 + MER82 DNA MER2_type 1 446 -207 2450 204 166 41 chr4 28868162 28868896 -173459451 - LTR1B LTR ERV1 0 826 1 1099 242 5 0 chr4 28868896 28869105 -173459242 + MER82 DNA MER2_type 444 653 0 278 369 0 0 chr4 28869118 28869229 -173459118 - MIR SINE MIR -8 254 144 1119 268 74 18 chr4 28869230 28869678 -173458669 + LTR1 LTR ERV1 4 476 -309 1608 173 50 21 chr4 28869790 28870073 -173458274 - AluJb SINE Alu -17 295 5 1962 138 3 0 chr4 28870142 28870452 -173457895 - AluSx SINE Alu 0 311 1 433 339 28 6 chr4 28871288 28871468 -173456879 - MIR SINE MIR -32 230 47 2177 103 0 56 chr4 28871495 28871668 -173456679 - AluSx SINE Alu -10 302 154 2457 61 7 7 chr4 28871668 28871978 -173456369 - AluY SINE Alu -1 310 1 2177 103 0 56 chr4 28871978 28872124 -173456223 - AluSx SINE Alu -158 154 1 754 217 138 69 chr4 28872884 28873262 -173455085 + MLT1J2 LTR MaLR 47 450 0 713 236 53 49 chr4 28873742 28873988 -173454359 - L1MC/D LINE L1 -2065 5743 5497 1049 240 65 31 chr4 28873996 28874317 -173454030 - MLT1C LTR MaLR 0 467 136 256 188 0 0 chr4 28874311 28874359 -173453988 - AluJo SINE Alu -72 230 183 * 776 201 0 0 chr4 28874359 28874493 -173453854 - AluJo SINE Alu -161 151 18 354 192 26 51 chr4 28874506 28874584 -173453763 - MLT1C LTR MaLR -429 76 1 2552 139 25 23 chr4 28874648 28875080 -173453267 + Tigger2a DNA MER2_type 1 433 -1 436 278 139 20 chr4 28875091 28875386 -173452961 + L2 LINE L2 1989 2318 -996 272 146 0 0 chr4 28875386 28875427 -173452920 - MER96B DNA MER1_type? -182 235 195 812 210 6 11 chr4 28875688 28875864 -173452483 - MER96B DNA MER1_type? -242 175 1 922 300 149 18 chr4 28875864 28876697 -173451650 + L2 LINE L2 2337 3281 -32 1436 185 100 4 chr4 28876759 28876907 -173451440 - AluJo SINE Alu -16 296 164 189 0 0 0 chr4 28876907 28876928 -173451419 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1436 185 100 4 chr4 28876928 28877049 -173451298 - AluJo SINE Alu -148 164 1 216 226 38 0 chr4 28877218 28877271 -173451076 + (TCTCTG)n Simple_repeat Simple_repeat 4 58 0 387 168 65 47 chr4 28877772 28877879 -173450468 - MIR SINE MIR -89 173 65 656 154 0 9 chr4 28878178 28878288 -173450059 - MLT1A1 LTR MaLR 0 365 257 461 117 0 26 chr4 28878310 28878387 -173449960 - MLT1A1 LTR MaLR -281 84 10 237 200 0 0 chr4 28878495 28878550 -173449797 - MLT2B3 LTR ERVL 0 520 466 1609 128 15 158 chr4 28878580 28878972 -173449375 + Tigger3(Golem) DNA MER2_type 11 3027 -2 2661 168 47 18 chr4 28878984 28879478 -173448869 - MLT2B3 LTR ERVL -46 508 1 3472 51 7 0 chr4 28879886 28880320 -173448027 + L1PA8 LINE L1 5727 6163 -9 2196 114 30 0 chr4 28880627 28880924 -173447423 + AluSx SINE Alu 3 308 -4 212 380 20 20 chr4 28881545 28881645 -173446702 + L2 LINE L2 3179 3278 -35 444 223 17 109 chr4 28882259 28882434 -173445913 + MER5B DNA MER1_type 20 178 0 4561 123 14 46 chr4 28882719 28882845 -173445502 - L1PA15 LINE L1 -40 6125 5996 14517 137 14 5 chr4 28882845 28886088 -173442259 - L1PA10 LINE L1 -11 6157 2886 4561 123 14 46 chr4 28886088 28886773 -173441574 - L1PA15 LINE L1 -169 5996 5340 * 5309 179 13 6 chr4 28886771 28887812 -173440535 - L1PA15 LINE L1 -1485 4661 3613 1865 212 46 48 chr4 28888563 28889214 -173439133 - Charlie7 DNA MER1_type -3 2609 1960 348 290 31 0 chr4 28889274 28889436 -173438911 - Charlie7 DNA MER1_type -648 1964 1798 324 43 0 0 chr4 28889437 28889483 -173438864 + MADE1 DNA Mariner 1 46 -34 247 233 14 0 chr4 28889506 28889579 -173438768 - Charlie7 DNA MER1_type -823 1789 1716 29204 112 14 56 chr4 28889580 28896010 -173432337 - L1PA7 LINE L1 -1 6153 1 446 212 75 14 chr4 28896018 28896164 -173432183 - Charlie7 DNA MER1_type -899 1713 1559 905 154 48 5 chr4 28896756 28897053 -173431294 - THE1B LTR MaLR 0 364 1 1077 264 25 43 chr4 28897104 28897592 -173430755 - Charlie7 DNA MER1_type -1374 1238 760 4662 196 24 7 chr4 28897625 28898312 -173430035 - L1MB3 LINE L1 -2 6417 5743 306 0 0 0 chr4 28898312 28898346 -173430001 + (TG)n Simple_repeat Simple_repeat 1 34 0 4662 196 24 7 chr4 28898346 28899647 -173428700 - L1MB3 LINE L1 -676 5743 4392 257 292 75 13 chr4 28899671 28899979 -173428368 + L1M4 LINE L1 3168 3494 -2652 240 100 0 0 chr4 28900336 28900376 -173427971 + (CA)n Simple_repeat Simple_repeat 2 41 0 5777 206 41 37 chr4 28900399 28901650 -173426697 - L1MB3 LINE L1 -1966 4416 3171 1612 154 54 18 chr4 28901650 28901929 -173426418 + AluJo SINE Alu 1 289 -23 5777 206 41 37 chr4 28901929 28903259 -173425088 - L1MB3 LINE L1 -3211 3171 1735 1107 141 58 0 chr4 28903254 28903445 -173424902 - L1MB3 LINE L1 -6159 225 24 * 748 306 70 16 chr4 28903445 28903942 -173424405 - Charlie7 DNA MER1_type -1876 736 213 2647 72 3 6 chr4 28904013 28904362 -173423985 + THE1B LTR MaLR 17 364 0 1810 164 7 4 chr4 28904530 28904834 -173423513 + AluJo SINE Alu 1 305 0 208 341 22 0 chr4 28906082 28906173 -173422174 - MIR3 SINE MIR -5 203 111 2071 135 10 0 chr4 28906470 28906766 -173421581 - AluSg SINE Alu -11 299 1 1636 152 52 38 chr4 28906952 28907241 -173421106 - AluJb SINE Alu -19 293 1 371 246 174 36 chr4 28907241 28907398 -173420949 - MIR3 SINE MIR -8 200 17 2455 63 0 0 chr4 28908480 28908782 -173419565 - AluY SINE Alu -9 302 1 479 296 87 45 chr4 28909086 28909350 -173418997 + L2 LINE L2 3024 3298 -15 241 296 204 0 chr4 28909783 28909871 -173418476 + MIR SINE MIR 32 137 -71 1715 213 25 3 chr4 28909871 28910228 -173418119 - MLT1A1 LTR MaLR 0 365 1 1668 226 37 3 chr4 28910730 28911107 -173417240 + MLT1B LTR MaLR 1 390 0 2090 152 69 12 chr4 28911208 28911630 -173416717 + L1MA6 LINE L1 5679 6124 -176 2728 126 5 0 chr4 28911641 28912046 -173416301 - L1PB1 LINE L1 -3 6148 5742 838 158 33 11 chr4 28912046 28912228 -173416119 + L1MA6 LINE L1 6110 6297 -3 27 0 0 0 chr4 28912228 28912255 -173416092 + AT_rich Low_complexity Low_complexity 1 27 0 281 230 0 27 chr4 28912680 28912754 -173415593 + LTR33A LTR ERVL 452 523 0 203 285 145 89 chr4 28912835 28913014 -173415333 - MER5A DNA MER1_type 0 189 1 695 296 6 0 chr4 28913019 28913198 -173415149 - MIR SINE MIR -10 252 73 1573 144 186 55 chr4 28913210 28913287 -173415060 - MSTB1 LTR MaLR 0 432 366 2137 117 7 0 chr4 28913287 28913578 -173414769 + AluSq SINE Alu 1 293 -20 1573 144 186 55 chr4 28913578 28913882 -173414465 - MSTB1 LTR MaLR -66 366 1 315 229 100 50 chr4 28914738 28914878 -173413469 + MIR SINE MIR 55 201 -61 192 97 0 0 chr4 28914913 28914944 -173413403 + (GAAAA)n Simple_repeat Simple_repeat 2 32 0 213 348 11 22 chr4 28914972 28915064 -173413283 + MIR SINE MIR 16 106 -102 27 29 0 0 chr4 28915163 28915197 -173413150 + AT_rich Low_complexity Low_complexity 1 34 0 2495 172 15 17 chr4 28915887 28916306 -173412041 + MLT2C2 LTR ERVL 1 420 -44 360 43 0 0 chr4 28916306 28916352 -173411995 + (TG)n Simple_repeat Simple_repeat 2 47 0 2495 172 15 17 chr4 28916352 28916397 -173411950 + MLT2C2 LTR ERVL 420 464 0 790 209 15 15 chr4 28916587 28916788 -173411559 - LTR16C LTR ERVL -6 485 285 198 0 0 0 chr4 28917599 28917621 -173410726 + (GA)n Simple_repeat Simple_repeat 2 23 0 803 249 85 41 chr4 28918355 28918516 -173409831 + MLT1L LTR MaLR 111 264 -351 2379 84 3 6 chr4 28918516 28918849 -173409498 - L1PA8 LINE L1 -2 6170 5839 803 249 85 41 chr4 28918849 28919077 -173409270 + MLT1L LTR MaLR 264 581 -34 2997 56 13 8 chr4 28920237 28920630 -173407717 - L1PA8 LINE L1 -6 6166 5772 29 0 0 0 chr4 28921221 28921250 -173407097 + AT_rich Low_complexity Low_complexity 1 29 0 393 286 20 0 chr4 28921948 28922046 -173406301 + MER5A DNA MER1_type 10 109 -80 205 185 56 0 chr4 28922402 28922456 -173405891 + (TGAA)n Simple_repeat Simple_repeat 1 57 0 252 260 135 29 chr4 28922643 28922747 -173405600 - MIR SINE MIR -33 229 115 357 17 34 34 chr4 28923436 28923495 -173404852 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 4016 214 65 37 chr4 28923883 28924615 -173403732 - L1ME1 LINE L1 -224 6737 6027 2092 130 0 3 chr4 28924615 28924908 -173403439 - AluSx SINE Alu -20 292 1 4016 214 65 37 chr4 28924908 28926319 -173402028 - L1ME1 LINE L1 -934 6027 4658 2043 148 3 0 chr4 28926319 28926617 -173401730 + AluJb SINE Alu 1 299 -13 4016 214 65 37 chr4 28926617 28927045 -173401302 - L1ME1 LINE L1 -2303 4658 4244 2459 82 0 0 chr4 28927045 28927348 -173400999 - AluY SINE Alu -8 303 1 4016 214 65 37 chr4 28927348 28927941 -173400406 - L1ME1 LINE L1 -2717 4244 3386 2726 265 92 51 chr4 28927940 28928054 -173400293 - L1ME1 LINE L1 -5202 1221 1113 * 1898 121 0 0 chr4 28928054 28928303 -173400044 + AluSx SINE Alu 39 287 -25 207 0 0 0 chr4 28928307 28928330 -173400017 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2726 265 92 51 chr4 28928330 28929368 -173398979 - L1ME1 LINE L1 -5312 1111 17 693 204 55 41 chr4 28929400 28929620 -173398727 - L1M4 LINE L1 -2428 3718 3496 1529 160 61 77 chr4 28929632 28929835 -173398512 - L1MC2 LINE L1 -38 6306 6110 506 225 0 36 chr4 28929835 28929973 -173398374 - FLAM_A SINE Alu 0 133 1 1529 160 61 77 chr4 28929973 28930144 -173398203 - L1MC2 LINE L1 -234 6110 5938 324 313 81 25 chr4 28930360 28930558 -173397789 - L1MC2 LINE L1 -23 6390 6182 635 162 0 44 chr4 28930571 28930707 -173397640 - FLAM_A SINE Alu 0 142 13 2136 157 32 20 chr4 28930721 28931123 -173397224 - L1MC2 LINE L1 -238 6175 5769 810 102 8 0 chr4 28931145 28931263 -173397084 + LTR15 LTR ERV1 1 119 -374 18552 31 1 1 chr4 28931263 28934198 -173394149 + L1PA4 LINE L1 3146 6080 -75 2605 77 32 13 chr4 28934217 28934594 -173393753 + LTR15 LTR ERV1 104 487 -6 338 139 0 42 chr4 28934587 28934659 -173393688 + AluSc SINE Alu 231 299 0 * 2497 164 48 44 chr4 28934660 28935694 -173392653 - L1MC2 LINE L1 -637 5776 4747 26 0 0 0 chr4 28935710 28935736 -173392611 + AT_rich Low_complexity Low_complexity 1 26 0 1971 141 0 0 chr4 28935736 28936026 -173392321 - AluSx SINE Alu -22 290 1 2674 274 80 20 chr4 28936040 28936225 -173392122 - L1MC2 LINE L1 -2669 3546 3373 297 0 0 0 chr4 28936225 28936258 -173392089 + (TG)n Simple_repeat Simple_repeat 1 33 0 2674 274 80 20 chr4 28936258 28937262 -173391085 - L1MC2 LINE L1 -2842 3373 2286 968 83 8 0 chr4 28937301 28937433 -173390914 - AluSq/x SINE Alu -179 133 1 587 258 115 85 chr4 28937451 28937851 -173390496 - L1MC2 LINE L1 -4105 2291 1880 866 200 77 91 chr4 28937958 28938163 -173390184 - MER46C DNA MER2_type -3 335 135 2398 63 0 0 chr4 28938163 28938463 -173389884 - AluY SINE Alu -11 300 1 866 200 77 91 chr4 28938463 28938597 -173389750 - MER46C DNA MER2_type -203 135 1 245 231 10 39 chr4 28938645 28938749 -173389598 + GA-rich Low_complexity Low_complexity 2 102 0 2094 121 3 19 chr4 28939433 28939748 -173388599 + AluSx SINE Alu 1 310 -2 235 130 37 0 chr4 28940873 28940927 -173387420 + (TA)n Simple_repeat Simple_repeat 1 56 0 1294 174 17 14 chr4 28940941 28941203 -173387144 - L1MB3 LINE L1 -164 6019 5756 256 279 115 39 chr4 28941892 28941996 -173386351 - L2 LINE L2 -13 3300 3189 4944 197 72 30 chr4 28941996 28942202 -173386145 + Charlie1a DNA MER1_type 1 197 -2564 2416 78 3 0 chr4 28942202 28942509 -173385838 - AluY SINE Alu -3 308 1 4944 197 72 30 chr4 28942509 28943554 -173384793 + Charlie1a DNA MER1_type 197 1305 -150 2026 159 17 0 chr4 28943566 28943912 -173384435 - L1MB3 LINE L1 -9 6174 5823 698 69 0 0 chr4 28943912 28944013 -173384334 - AluY SINE Alu -1 310 210 210 37 0 0 chr4 28944039 28944066 -173384281 + (TAA)n Simple_repeat Simple_repeat 2 28 0 596 173 53 23 chr4 28944066 28944199 -173384148 - L1MB3 LINE L1 -475 5708 5572 7193 35 0 1 chr4 28944207 28945067 -173383280 - L1PA3 LINE L1 0 6155 5297 418 186 52 0 chr4 28945083 28945180 -173383167 + Charlie1a DNA MER1_type 1304 1405 -50 558 196 0 0 chr4 28945180 28945282 -173383065 - FLAM_A SINE Alu -20 122 21 268 128 85 0 chr4 28945310 28945357 -173382990 + Charlie1a DNA MER1_type 1396 1446 -9 495 314 54 74 chr4 28945430 28945891 -173382456 + L3 LINE CR1 1118 1569 -8 338 333 120 0 chr4 28946579 28946729 -173381618 - MIR SINE MIR -73 189 22 25 0 0 0 chr4 28946796 28946821 -173381526 + AT_rich Low_complexity Low_complexity 1 25 0 2202 46 8 29 chr4 28948004 28948377 -173379970 + L1PA4 LINE L1 5663 6152 -3 679 235 23 86 chr4 28948958 28949260 -173379087 - L2 LINE L2 -1 3312 3030 207 319 75 11 chr4 28949229 28949323 -173379024 - L2 LINE L2 -661 2653 2554 * 5342 94 20 3 chr4 28949607 28950373 -173377974 - L1PA15 LINE L1 0 6165 5387 1551 230 50 45 chr4 28950449 28950988 -173377359 - L1MC5 LINE L1 -430 7531 6990 222 335 54 38 chr4 28951460 28951645 -173376702 - L2 LINE L2 -813 2501 2314 21 0 0 0 chr4 28952301 28952322 -173376025 + AT_rich Low_complexity Low_complexity 1 21 0 1539 71 5 0 chr4 28952473 28952669 -173375678 - MER107 DNA MER1_type 0 197 1 1931 149 0 3 chr4 28953835 28954136 -173374211 - AluSx SINE Alu -12 300 1 466 257 46 0 chr4 28954480 28954589 -173373758 - L2 LINE L2 -14 3299 3186 531 213 77 30 chr4 28956040 28956183 -173372164 - MIR SINE MIR 0 262 113 1391 181 211 18 chr4 28956186 28956518 -173371829 - MSTD LTR MaLR 0 396 1 353 337 32 0 chr4 28956523 28956618 -173371729 - MIR SINE MIR -155 107 10 654 363 67 38 chr4 28957264 28957793 -173370554 - L2 LINE L2 -22 3250 2701 349 272 29 48 chr4 28957789 28957892 -173370455 - L2 LINE L2 -1 3271 3171 * 185 333 11 33 chr4 28957915 28958005 -173370342 - L2 LINE L2 -661 2653 2566 367 179 179 9 chr4 28958120 28958226 -173370121 + L2 LINE L2 3190 3313 0 2289 93 0 3 chr4 28958362 28958663 -173369684 - AluY SINE Alu -11 300 1 1016 301 108 12 chr4 28959196 28959602 -173368745 + L2 LINE L2 2820 3264 -49 238 152 43 0 chr4 28960653 28960699 -173367648 - L1MC5 LINE L1 -89 7872 7825 22 0 0 0 chr4 28960772 28960794 -173367553 + AT_rich Low_complexity Low_complexity 1 22 0 3480 38 0 2 chr4 28960983 28961408 -173366939 + L1PA4 LINE L1 5724 6147 -8 1308 195 73 34 chr4 28961699 28962027 -173366320 + MER58B DNA MER1_type 1 341 0 252 340 150 0 chr4 28962027 28962127 -173366220 + L2 LINE L2 3148 3262 -10 180 152 0 0 chr4 28962933 28962966 -173365381 + (ATG)n Simple_repeat Simple_repeat 1 33 0 652 124 0 0 chr4 28963531 28963628 -173364719 - AluSg/x SINE Alu -8 301 205 313 116 0 0 chr4 28963628 28963687 -173364660 - Alu SINE Alu -261 40 1 190 315 0 0 chr4 28963759 28963813 -173364534 + L2 LINE L2 3211 3264 -8 229 383 74 40 chr4 28963857 28964032 -173364315 - L2 LINE L2 -4 3268 3088 3376 126 39 14 chr4 28964528 28965098 -173363249 - L1MC3 LINE L1 -13 7772 7189 396 264 0 0 chr4 28965098 28965189 -173363158 - MLT1F1 LTR MaLR -442 125 35 800 115 64 13 chr4 28965189 28965346 -173363001 - L1MC3 LINE L1 -688 7097 6933 493 206 11 0 chr4 28965347 28965439 -173362908 - MER103 DNA DNA -72 94 2 490 257 251 5 chr4 28965551 28965738 -173362609 - MIR SINE MIR 0 262 30 370 81 54 0 chr4 28965973 28966047 -173362300 + T-rich Low_complexity Low_complexity 2 79 0 7691 20 5 0 chr4 28966050 28967604 -173360743 - L1PA3 LINE L1 -3 6152 4595 4558 19 0 0 chr4 28967604 28968129 -173360218 + L1PA3 LINE L1 4077 4601 -1545 337 332 61 89 chr4 28968321 28968682 -173359665 + L2 LINE L2 2922 3272 0 628 269 141 29 chr4 28968708 28969091 -173359256 + L1ME4a LINE L1 5597 6022 -99 354 290 63 63 chr4 28969768 28969975 -173358372 - L3 LINE CR1 -74 1503 1297 196 268 174 58 chr4 28970504 28970642 -173357705 + L2 LINE L2 3160 3313 0 256 247 94 0 chr4 28970897 28970982 -173357365 + MIR SINE MIR 122 214 -48 16502 136 14 18 chr4 28971359 28974087 -173354260 - Tigger2 DNA MER2_type 0 2718 2 189 229 0 0 chr4 28974836 28974871 -173353476 - L2 LINE L2 -18 3295 3261 223 257 0 140 chr4 28974884 28975020 -173353327 - L2 LINE L2 -164 3108 2992 383 318 0 16 chr4 28975136 28975265 -173353082 - MIR SINE MIR 0 262 136 826 231 68 81 chr4 28975486 28975930 -173352417 + L1MC4 LINE L1 7321 7854 -188 455 311 62 10 chr4 28976039 28976248 -173352099 + L2 LINE L2 3094 3313 0 2078 96 4 4 chr4 28976529 28976831 -173351516 - AluY SINE Alu 0 302 1 1684 165 3 38 chr4 28978204 28978519 -173349828 - AluJo SINE Alu -8 304 1 25 31 0 0 chr4 28978544 28978576 -173349771 + AT_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr4 28978685 28978734 -173349613 + AT_rich Low_complexity Low_complexity 1 49 0 189 162 0 0 chr4 28979419 28979456 -173348891 - L2 LINE L2 -310 2962 2926 224 323 135 0 chr4 28979463 28979559 -173348788 - L2 LINE L2 -580 2734 2626 32413 89 8 9 chr4 28979598 28984163 -173344184 + L1PA6 LINE L1 11 4571 -1575 6745 61 48 16 chr4 28984163 28985001 -173343346 + L1PA6 LINE L1 4489 5299 -855 2811 3 0 0 chr4 28985001 28985304 -173343043 + AluYa5 SINE Alu 1 303 -8 6745 61 48 16 chr4 28985304 28986102 -173342245 + L1PA6 LINE L1 5299 6154 0 550 365 93 3 chr4 28986193 28986503 -173341844 - L2 LINE L2 -691 2623 2286 942 303 152 14 chr4 28986526 28987191 -173341156 + L2 LINE L2 2464 3242 -71 233 203 141 0 chr4 28987669 28987733 -173340614 + L2 LINE L2 3226 3298 -15 234 62 0 0 chr4 28987735 28987767 -173340580 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 21 57 0 0 chr4 28988307 28988342 -173340005 + AT_rich Low_complexity Low_complexity 1 35 0 1679 153 20 35 chr4 28988506 28988852 -173339495 - L1MB8 LINE L1 -1 6177 5837 14392 92 10 2 chr4 28988871 28991545 -173336802 - L1PA4 LINE L1 0 6155 3465 1130 50 7 0 chr4 28991545 28991684 -173336663 - BC200 scRNA scRNA -60 140 1 26975 64 1 2 chr4 28991684 28995164 -173333183 - L1PA4 LINE L1 -2669 3477 1 30 0 0 0 chr4 28995208 28995238 -173333109 + AT_rich Low_complexity Low_complexity 1 30 0 380 268 98 68 chr4 28995415 28995680 -173332667 - L1ME4a LINE L1 -239 5882 5610 1951 143 3 3 chr4 28995707 28996000 -173332347 - AluSx SINE Alu -17 295 3 815 90 8 0 chr4 28996102 28996224 -173332123 + (TTC)n Simple_repeat Simple_repeat 1 123 0 9341 81 5 1 chr4 28996229 28998285 -173330062 - L1PA7 LINE L1 0 6154 4094 21 71 0 0 chr4 28999168 28999210 -173329137 + AT_rich Low_complexity Low_complexity 1 42 0 795 201 5 62 chr4 28999597 28999791 -173328556 + LTR41 LTR ERVL 3 185 -588 257 230 158 43 chr4 28999913 29000052 -173328295 + LTR50 LTR ERVL 488 642 -153 797 297 122 55 chr4 29000108 29000747 -173327600 + HAL1 LINE L1 237 918 -1589 2416 240 152 39 chr4 29001350 29002566 -173325781 + HAL1 LINE L1 945 2298 -209 268 333 37 100 chr4 29003163 29003433 -173324914 - L2 LINE L2 -16 3256 3004 2336 94 0 9 chr4 29003787 29004116 -173324231 - LTR17 LTR ERV1 -454 326 1 1623 65 0 0 chr4 29004116 29004316 -173324031 - HERV17 LTR ERV1 0 8626 8427 21 0 0 0 chr4 29004621 29004642 -173323705 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr4 29005230 29005263 -173323084 + AT_rich Low_complexity Low_complexity 1 33 0 498 311 45 0 chr4 29006078 29006210 -173322137 + MIR SINE MIR 16 153 -55 2161 247 58 50 chr4 29006359 29007120 -173321227 - L1ME3A LINE L1 0 6170 5398 633 169 99 16 chr4 29007123 29007279 -173321068 - MIR SINE MIR -94 114 1 25 83 0 0 chr4 29007286 29007346 -173321001 + AT_rich Low_complexity Low_complexity 1 60 0 228 289 26 70 chr4 29007530 29007644 -173320703 - L2 LINE L2 0 3272 3164 330 26 0 0 chr4 29008126 29008165 -173320182 + (CA)n Simple_repeat Simple_repeat 2 40 0 236 247 56 34 chr4 29008428 29008517 -173319830 - MER103 DNA DNA -9 157 67 247 164 16 16 chr4 29009332 29009393 -173318954 + (TA)n Simple_repeat Simple_repeat 2 62 0 3208 219 64 21 chr4 29009701 29010710 -173317637 - L1ME3A LINE L1 0 6170 5125 29 0 0 0 chr4 29011262 29011291 -173317056 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr4 29011940 29011975 -173316372 + AT_rich Low_complexity Low_complexity 1 35 0 208 174 0 22 chr4 29012146 29012192 -173316155 + T-rich Low_complexity Low_complexity 4 48 0 189 0 0 0 chr4 29012568 29012589 -173315758 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 315 0 0 0 chr4 29012588 29012623 -173315724 + (CA)n Simple_repeat Simple_repeat 2 36 0 555 293 50 37 chr4 29013699 29013941 -173314406 + MIR SINE MIR 7 251 -11 35 71 0 0 chr4 29013974 29014044 -173314303 + AT_rich Low_complexity Low_complexity 1 70 0 23 0 0 0 chr4 29015164 29015187 -173313160 + AT_rich Low_complexity Low_complexity 1 23 0 299 360 126 9 chr4 29015317 29015539 -173312808 + L2 LINE L2 1233 1480 -1834 2005 136 7 3 chr4 29015583 29015885 -173312462 + AluSx SINE Alu 1 303 -9 191 363 12 25 chr4 29016861 29016941 -173311406 + MIR SINE MIR 2 80 -182 1840 146 35 0 chr4 29018000 29018171 -173310176 - AluSx SINE Alu -14 298 112 414 0 0 0 chr4 29018171 29018217 -173310130 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1840 146 35 0 chr4 29018217 29018333 -173310014 - AluSx SINE Alu -200 112 1 246 109 455 0 chr4 29018722 29018777 -173309570 + MADE1 DNA Mariner 1 80 0 1645 153 68 36 chr4 29018984 29019349 -173308998 - LTR36 LTR ERV1 -234 377 1 370 333 8 0 chr4 29019376 29019499 -173308848 + Tigger8 DNA MER2_type 530 653 -13 198 300 14 29 chr4 29020593 29020663 -173307684 + MIR SINE MIR 20 88 -120 226 235 123 0 chr4 29020853 29020934 -173307413 + MIR3 SINE MIR 102 192 -16 22 35 0 0 chr4 29121388 29121417 -173206930 + AT_rich Low_complexity Low_complexity 1 29 0 184 241 167 0 chr4 29121942 29121996 -173206351 - MER5C DNA MER1_type -1 323 261 197 380 13 0 chr4 29122132 29122211 -173206136 - MIR SINE MIR -62 146 74 900 90 0 16 chr4 29122689 29122811 -173205536 - FRAM SINE Alu -14 162 43 591 288 33 0 chr4 29123062 29123215 -173205132 + MIR SINE MIR 37 194 -68 1694 163 31 31 chr4 29123235 29123555 -173204792 + MER2 DNA MER2_type 1 320 -25 758 240 153 100 chr4 29125235 29125856 -173202491 + L2 LINE L2 2574 3248 -65 302 205 12 0 chr4 29126557 29126640 -173201707 + (TATG)n Simple_repeat Simple_repeat 3 86 0 246 172 0 212 chr4 29126694 29126793 -173201554 + L2 LINE L2 3235 3312 -1 1440 121 5 5 chr4 29127025 29127240 -173201107 + AluSx SINE Alu 1 215 -97 1497 183 49 14 chr4 29128008 29128293 -173200054 - AluJo SINE Alu -17 295 1 189 403 0 0 chr4 29128367 29128429 -173199918 + MIR SINE MIR 40 101 -161 489 47 0 0 chr4 29128802 29128866 -173199481 + (TG)n Simple_repeat Simple_repeat 2 65 0 200 346 77 31 chr4 29129277 29129407 -173198940 + L3b LINE CR1 1183 1318 -265 21 0 0 0 chr4 29129490 29129511 -173198836 + AT_rich Low_complexity Low_complexity 1 21 0 242 206 48 16 chr4 29130181 29130244 -173198103 + MIR SINE MIR 105 169 -93 244 361 69 28 chr4 29130891 29131035 -173197312 - L2 LINE L2 -4 3268 3119 211 150 25 0 chr4 29132944 29132984 -173195363 + (TA)n Simple_repeat Simple_repeat 1 41 0 1207 189 43 4 chr4 29134189 29134422 -173193925 + AluJb SINE Alu 50 291 -21 2460 121 56 16 chr4 29134516 29134947 -173193400 + L1MB3 LINE L1 5728 6175 -8 206 211 0 0 chr4 29135162 29135200 -173193147 - L2 LINE L2 -8 3305 3268 783 213 23 6 chr4 29136266 29136440 -173191907 - Charlie1 DNA MER1_type -197 2564 2388 432 55 0 0 chr4 29136442 29136497 -173191850 + (TA)n Simple_repeat Simple_repeat 1 55 0 37384 85 9 7 chr4 29136497 29142620 -173185727 - L1PA6 LINE L1 -7 6147 11 180 0 0 0 chr4 29142625 29142645 -173185702 + (T)n Simple_repeat Simple_repeat 1 20 0 1936 118 15 0 chr4 29142790 29143062 -173185285 + AluSx SINE Alu 23 298 -14 1106 285 203 50 chr4 29143084 29144464 -173183883 - L2 LINE L2 -43 3270 1686 421 151 9 9 chr4 29144472 29144578 -173183769 + (TA)n Simple_repeat Simple_repeat 2 107 0 811 149 0 8 chr4 29146172 29146306 -173182041 - FLAM_C SINE Alu 0 133 1 259 86 0 0 chr4 29147177 29147212 -173181135 - L1MC4a LINE L1 -980 6828 6794 740 263 61 49 chr4 29147329 29147576 -173180771 + MIR SINE MIR 13 262 0 317 287 0 3 chr4 29147696 29147796 -173180551 - L1MC4 LINE L1 0 8042 7898 1602 246 82 34 chr4 29147815 29148401 -173179946 - L1MC4 LINE L1 -323 7719 7106 477 216 60 9 chr4 29148549 29148665 -173179682 - L1MC4 LINE L1 -995 7047 6926 1609 194 42 52 chr4 29148782 29149185 -173179162 - L1MC4a LINE L1 -968 6840 6442 207 377 14 0 chr4 29150487 29150556 -173177791 - L2 LINE L2 -20 3252 3183 2084 105 0 29 chr4 29150602 29150908 -173177439 - AluSx SINE Alu -15 297 1 21 82 0 0 chr4 29151492 29151541 -173176806 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr4 29151788 29151816 -173176531 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 29152028 29152050 -173176297 + AT_rich Low_complexity Low_complexity 1 22 0 716 280 28 36 chr4 29152268 29152518 -173175829 + MIR SINE MIR 15 262 0 395 276 71 12 chr4 29154171 29154341 -173174006 + MIR SINE MIR 28 207 -55 309 342 48 80 chr4 29154383 29154696 -173173651 - L2 LINE L2 -45 3227 2925 234 344 189 28 chr4 29154812 29155024 -173173323 + MIR SINE MIR 9 254 -8 1915 149 0 0 chr4 29155195 29155477 -173172870 - AluSx SINE Alu -30 282 1 8514 145 30 5 chr4 29155533 29157961 -173170386 + L1MA4 LINE L1 3816 6300 0 186 236 91 18 chr4 29158002 29158057 -173170290 - MIR SINE MIR -129 79 21 270 141 16 0 chr4 29158325 29158385 -173169962 + L1PB3 LINE L1 6082 6147 -7 303 357 175 11 chr4 29158501 29158675 -173169672 - L2 LINE L2 -7 3306 3162 534 161 205 18 chr4 29158675 29158787 -173169560 + FLAM_C SINE Alu 1 133 0 303 357 175 11 chr4 29158787 29158990 -173169357 - L2 LINE L2 -151 3162 2867 761 285 102 70 chr4 29160299 29160772 -173167575 + L2 LINE L2 2160 2647 -667 388 288 219 45 chr4 29160924 29161257 -173167090 + L2 LINE L2 2883 3273 -40 22 35 0 0 chr4 29162161 29162190 -173166157 + AT_rich Low_complexity Low_complexity 1 29 0 403 250 84 32 chr4 29162219 29162380 -173165967 - MIR SINE MIR -50 212 43 35 41 0 0 chr4 29162470 29162519 -173165828 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr4 29162940 29162968 -173165379 + AT_rich Low_complexity Low_complexity 1 28 0 358 259 93 46 chr4 29163897 29164005 -173164342 - L2 LINE L2 0 3272 3160 542 259 120 6 chr4 29164191 29164349 -173163998 + MIR SINE MIR 12 187 -75 2296 72 0 7 chr4 29164873 29165165 -173163182 + AluSc SINE Alu 1 290 -19 24 77 0 0 chr4 29165397 29165449 -173162898 + AT_rich Low_complexity Low_complexity 1 52 0 568 221 97 45 chr4 29167813 29167967 -173160380 - MER20 DNA MER1_type -57 162 1 1099 187 114 35 chr4 29169893 29170182 -173158165 - MLT1D LTR MaLR 0 505 194 289 318 9 28 chr4 29170185 29170292 -173158055 - MIR SINE MIR -68 140 36 510 245 127 63 chr4 29171070 29171307 -173157040 - MIR SINE MIR 0 262 11 299 67 0 0 chr4 29173559 29173604 -173154743 - AluSc SINE Alu -4 295 251 200 184 20 0 chr4 29173723 29173772 -173154575 + CT-rich Low_complexity Low_complexity 2 51 0 22 56 0 0 chr4 29174837 29174873 -173153474 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr4 29175441 29175464 -173152883 + AT_rich Low_complexity Low_complexity 1 23 0 211 276 77 74 chr4 29175714 29175831 -173152516 + MIR SINE MIR 4 117 -91 2169 99 20 0 chr4 29176412 29176706 -173151641 + AluSg SINE Alu 1 300 -10 487 299 97 21 chr4 29177638 29178016 -173150331 - L1ME LINE L1 -426 5736 5334 314 313 175 21 chr4 29178176 29178604 -173149743 - L1ME LINE L1 -1096 5050 4557 579 300 90 40 chr4 29178891 29179387 -173148960 - L1ME LINE L1 -1983 4163 3621 1822 137 29 44 chr4 29179387 29179729 -173148618 + MER44D DNA MER2_type 2 608 -1 579 300 90 40 chr4 29179729 29179749 -173148598 - L1ME LINE L1 -2525 3621 3603 492 283 64 72 chr4 29179777 29180028 -173148319 + MIR SINE MIR 2 250 -12 829 269 123 53 chr4 29180194 29181427 -173146920 - L1ME LINE L1 -2715 3431 2114 1096 274 95 75 chr4 29181710 29183001 -173145346 - L1MEd LINE L1 -833 1657 282 203 396 86 30 chr4 29183053 29183356 -173144991 - L2 LINE L2 -2701 613 294 2644 205 43 25 chr4 29184317 29184922 -173143425 - MLT1E3 LTR MaLR -8 616 1 250 56 0 0 chr4 29185925 29185961 -173142386 - Alu SINE Alu -6 295 260 516 349 29 11 chr4 29186221 29186396 -173141951 - MIR3 SINE MIR -17 191 14 883 284 159 22 chr4 29187379 29188101 -173140246 - L2 LINE L2 0 3313 2486 749 240 104 37 chr4 29191588 29191963 -173136384 - L1ME4a LINE L1 -3 6118 5719 805 162 78 22 chr4 29191981 29192160 -173136187 - MIR SINE MIR -11 251 63 357 320 64 0 chr4 29192855 29192980 -173135367 - L2 LINE L2 -1 3312 3180 224 299 154 13 chr4 29194772 29195000 -173133347 + L2 LINE L2 2799 3084 -188 998 156 22 127 chr4 29195035 29195230 -173133117 - AluJb SINE Alu -2 310 151 2065 88 19 53 chr4 29195230 29195550 -173132797 - AluSx SINE Alu -3 309 1 998 156 22 127 chr4 29195550 29195630 -173132717 - AluJb SINE Alu -161 151 64 220 250 204 64 chr4 29195647 29195819 -173132528 + L2 LINE L2 3118 3313 0 190 220 77 88 chr4 29196425 29196516 -173131831 - L2 LINE L2 -783 2531 2442 305 279 71 123 chr4 29196574 29196900 -173131447 - MLT1J LTR MaLR -202 309 1 195 222 0 0 chr4 29196957 29197002 -173131345 + (TG)n Simple_repeat Simple_repeat 1 45 0 820 253 112 37 chr4 29197050 29197398 -173130949 - L2 LINE L2 -15 3298 2925 450 319 64 10 chr4 29197656 29197860 -173130487 + MIR SINE MIR 12 226 -36 2191 60 70 3 chr4 29198295 29198580 -173129767 - AluY SINE Alu -7 304 1 458 255 92 119 chr4 29199250 29199662 -173128685 - LTR37B LTR ERV1 -63 405 5 14939 148 46 17 chr4 29200171 29201552 -173126795 - L1PB1 LINE L1 -1 6866 5527 1840 133 21 0 chr4 29201552 29201882 -173126465 - AluSq SINE Alu 0 336 1 14939 148 46 17 chr4 29201882 29206044 -173122303 - L1PB1 LINE L1 -1340 5527 1034 2444 68 0 0 chr4 29206044 29206340 -173122007 - AluY SINE Alu -15 296 1 14939 148 46 17 chr4 29206340 29207405 -173120942 - L1PB1 LINE L1 -5833 1034 1 286 288 44 84 chr4 29207712 29207938 -173120409 - MER31-int LTR ERV1 -881 4055 3839 239 116 116 0 chr4 29208227 29208247 -173120100 - MER58A DNA MER1_type -2196 224 208 1962 27 0 0 chr4 29208247 29208466 -173119881 - L1PA3 LINE L1 0 6155 5937 239 116 116 0 chr4 29208466 29208488 -173119859 - MER58A DNA MER1_type -2212 208 177 993 84 0 0 chr4 29208491 29208622 -173119725 - AluSc SINE Alu -9 300 170 489 83 0 0 chr4 29208622 29208682 -173119665 - AluSc SINE Alu -108 201 142 479 285 38 54 chr4 29208682 29208868 -173119479 - MER58A DNA MER1_type -40 184 2 398 276 40 102 chr4 29210243 29210468 -173117879 + MER58C DNA MER1_type 5 215 0 1420 269 70 85 chr4 29210559 29211712 -173116635 + L1MEc LINE L1 714 1849 -4547 785 162 0 0 chr4 29211768 29211879 -173116468 - FLAM_C SINE Alu -31 112 2 1152 287 54 29 chr4 29211884 29212222 -173116125 + L1MEc LINE L1 1836 2164 -4051 1992 112 79 0 chr4 29212222 29212500 -173115847 + AluSg SINE Alu 1 300 -10 1152 287 54 29 chr4 29212500 29212993 -173115354 + L1MEc LINE L1 2164 2647 -3568 2249 103 0 0 chr4 29213694 29213985 -173114362 + AluSq SINE Alu 1 291 -22 383 0 0 21 chr4 29213991 29214039 -173114308 + (TAA)n Simple_repeat Simple_repeat 2 48 0 467 289 60 0 chr4 29214278 29214427 -173113920 + Charlie8 DNA MER1_type 6 163 -2254 351 213 0 0 chr4 29215945 29216020 -173112327 - MER117 DNA MER1_type -115 82 8 2103 158 36 124 chr4 29216107 29216504 -173111843 + LTR32 LTR ERVL 15 361 -110 2052 122 7 0 chr4 29216504 29216790 -173111557 + AluSx SINE Alu 1 288 -24 2103 158 36 124 chr4 29216790 29216893 -173111454 + LTR32 LTR ERVL 361 471 0 1579 128 0 0 chr4 29217471 29217697 -173110650 - AluSg/x SINE Alu -3 307 82 184 300 0 17 chr4 29218119 29218179 -173110168 + L2 LINE L2 3006 3064 -208 2002 118 17 0 chr4 29218210 29218499 -173109848 - AluSx SINE Alu -18 294 1 195 42 0 0 chr4 29219513 29219537 -173108810 + (TG)n Simple_repeat Simple_repeat 1 24 0 190 274 16 0 chr4 29222047 29222109 -173106238 + L2 LINE L2 3251 3313 0 1458 262 108 6 chr4 29223788 29224277 -173104070 + MLT1H LTR MaLR 11 549 0 2449 21 68 0 chr4 29224464 29224745 -173103602 - L1PA4 LINE L1 -2 6153 5854 239 257 0 54 chr4 29224745 29224808 -173103539 + LTR33 LTR ERVL 118 178 -343 317 279 21 71 chr4 29225314 29225454 -173102893 + MIR SINE MIR 60 192 -70 549 306 28 52 chr4 29226326 29226578 -173101769 + MIR SINE MIR 17 262 0 1673 186 3 13 chr4 29227154 29227461 -173100886 + AluJb SINE Alu 1 304 -8 988 241 111 26 chr4 29227601 29228113 -173100234 + MLT1F1 LTR MaLR 1 542 0 1191 198 57 0 chr4 29228421 29228633 -173099714 - MER58A DNA MER1_type 0 224 1 636 174 0 0 chr4 29228924 29229033 -173099314 + MER45B DNA AcHobo 727 835 -205 2316 108 0 10 chr4 29229334 29229641 -173098706 - AluSx SINE Alu -8 304 1 4468 191 38 65 chr4 29229655 29230045 -173098302 - MER45B DNA AcHobo -548 1033 634 1948 163 0 0 chr4 29230045 29230352 -173097995 - AluJo SINE Alu -5 307 1 4468 191 38 65 chr4 29230352 29230544 -173097803 - MER45B DNA AcHobo -947 634 438 1889 188 92 45 chr4 29230544 29230990 -173097357 - MLT1C LTR MaLR 0 467 1 4468 191 38 65 chr4 29230990 29231301 -173097046 - MER45B DNA AcHobo -1143 438 168 2062 97 83 0 chr4 29231301 29231590 -173096757 + AluSq SINE Alu 1 313 0 4468 191 38 65 chr4 29231590 29231723 -173096624 - MER45B DNA AcHobo -1413 168 33 2145 183 95 12 chr4 29231735 29232157 -173096190 + LTR32 LTR ERVL 15 471 0 197 339 99 16 chr4 29232271 29232392 -173095955 - MIR3 SINE MIR -76 132 2 896 221 50 31 chr4 29232812 29233264 -173095083 - MLT1H LTR MaLR 0 549 3 1840 139 18 4 chr4 29233513 29233794 -173094553 - AluJb SINE Alu -3 309 25 266 348 30 22 chr4 29233815 29233950 -173094397 - MER5A DNA MER1_type -7 182 47 425 274 10 0 chr4 29234267 29234369 -173093978 + MER5A DNA MER1_type 3 105 -84 191 250 18 18 chr4 29235089 29235145 -173093202 + MIR SINE MIR 88 143 -119 657 291 151 38 chr4 29235905 29236410 -173091937 + L1ME LINE L1 4662 5223 -923 43505 35 21 2 chr4 29236442 29242507 -173085840 - L1PA2 LINE L1 0 6155 1 904 261 22 86 chr4 29242508 29242675 -173085672 + L1ME LINE L1 5270 5446 -724 2035 129 0 7 chr4 29242675 29242984 -173085363 + AluSx SINE Alu 1 307 -5 904 261 22 86 chr4 29242984 29243280 -173085067 + L1ME LINE L1 5446 5703 -467 267 175 0 0 chr4 29243283 29243340 -173085007 + (TA)n Simple_repeat Simple_repeat 1 57 0 361 300 87 10 chr4 29243349 29243575 -173084772 + L1MC4a LINE L1 5665 5909 -284 669 242 56 119 chr4 29244072 29244485 -173083862 + MLT1L LTR MaLR 229 615 0 204 398 107 11 chr4 29244523 29244870 -173083477 + L2 LINE L2 2891 3270 -2 1904 133 0 7 chr4 29245747 29246057 -173082290 - AluSx SINE Alu 0 308 1 296 254 173 40 chr4 29246073 29246246 -173082101 - MIR SINE MIR -1 261 66 313 379 51 6 chr4 29248071 29248248 -173080099 + MIR3 SINE MIR 17 201 -7 264 267 33 44 chr4 29249015 29249105 -173079242 + MLT1K LTR MaLR 211 299 -289 288 91 0 0 chr4 29249470 29249514 -173078833 + (TCCA)n Simple_repeat Simple_repeat 3 46 0 384 295 49 0 chr4 29249515 29249637 -173078710 - L2 LINE L2 -8 3264 3137 1377 218 80 32 chr4 29249643 29250085 -173078262 - MLT1C LTR MaLR -3 590 1 308 324 32 50 chr4 29250392 29250611 -173077736 - L2 LINE L2 -424 2890 2676 239 250 228 0 chr4 29251960 29252096 -173076251 + L1ME LINE L1 5650 5816 -305 788 217 66 45 chr4 29252376 29252574 -173075773 - L1MB5 LINE L1 -6 6168 5967 527 276 129 13 chr4 29252767 29252999 -173075348 + MIR SINE MIR 2 260 -2 201 242 91 40 chr4 29253022 29253121 -173075226 + L3 LINE CR1 458 561 -1016 4178 98 2 0 chr4 29253263 29253815 -173074532 - MER41A LTR ERV1 -1 553 1 412 250 16 48 chr4 29253824 29253948 -173074399 - L3 LINE CR1 -392 1185 1066 1142 262 80 43 chr4 29254140 29254625 -173073722 + L2 LINE L2 2809 3311 -2 1141 199 155 19 chr4 29254649 29254965 -173073382 + MER90 LTR ERV1 1 359 -216 607 167 0 0 chr4 29254996 29255098 -173073249 - L1MCa LINE L1 -5678 748 647 710 257 48 11 chr4 29255109 29255296 -173073051 + MER90 LTR ERV1 407 600 -14 4044 155 11 33 chr4 29255588 29256315 -173072032 - MER50 LTR ERV1 -23 711 1 236 274 0 0 chr4 29256442 29256493 -173071854 - L2 LINE L2 -11 3302 3252 327 182 68 34 chr4 29257676 29257764 -173070583 - L1MC2 LINE L1 -32 6312 6222 1622 129 4 0 chr4 29257764 29258012 -173070335 - AluJb SINE Alu -14 298 50 718 179 8 0 chr4 29258014 29258137 -173070210 - AluJo/FLAM SINE Alu -187 125 2 739 201 83 6 chr4 29258138 29258307 -173070040 - L1MC2 LINE L1 -114 6230 6049 252 313 26 35 chr4 29259453 29259568 -173068779 - MIR SINE MIR -114 148 35 1892 109 0 8 chr4 29259683 29259949 -173068398 + L1PA8A LINE L1 5864 6127 -4 379 231 9 46 chr4 29260027 29260135 -173068212 - MIR SINE MIR -71 191 88 569 261 17 19 chr4 29260270 29260449 -173067898 - MIR SINE MIR -67 141 16 373 261 130 19 chr4 29260458 29260584 -173067763 - MER5B DNA MER1_type -5 184 37 203 305 17 0 chr4 29260960 29261019 -173067328 + MIR3 SINE MIR 95 154 -54 527 231 58 8 chr4 29261099 29261220 -173067127 + L2 LINE L2 3187 3313 0 332 282 40 24 chr4 29261217 29261341 -173067006 + MER5A DNA MER1_type 64 189 0 * 459 272 32 8 chr4 29262038 29262163 -173066184 + MER5B DNA MER1_type 7 134 -44 470 168 30 10 chr4 29262252 29262353 -173065994 - L1MC2 LINE L1 0 6344 6242 213 39 0 0 chr4 29263117 29263143 -173065204 + (TAA)n Simple_repeat Simple_repeat 1 26 0 651 278 17 17 chr4 29263324 29263504 -173064843 + MIR3 SINE MIR 16 195 -13 188 290 72 0 chr4 29263576 29263645 -173064702 - L2 LINE L2 -3225 89 16 2010 177 85 11 chr4 29263651 29264086 -173064261 + MLT1C LTR MaLR 1 467 0 218 286 29 67 chr4 29264110 29264215 -173064132 + MIR SINE MIR 161 261 -1 217 192 39 0 chr4 29264215 29264267 -173064080 + GA-rich Low_complexity Low_complexity 3 56 0 296 257 112 84 chr4 29264286 29264465 -173063882 - MIR SINE MIR -19 189 3 285 29 0 0 chr4 29264508 29264542 -173063805 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 296 102 20 0 chr4 29264973 29265022 -173063325 + (CATCC)n Simple_repeat Simple_repeat 3 52 0 199 163 23 0 chr4 29265214 29265257 -173063090 - L2 LINE L2 -345 2968 2925 1654 244 28 13 chr4 29266097 29266557 -173061790 - MLT1C LTR MaLR 0 467 1 288 71 47 39 chr4 29266770 29266897 -173061450 + HERV17 LTR ERV1 706 833 -7793 21 0 0 0 chr4 29267826 29267847 -173060500 + AT_rich Low_complexity Low_complexity 1 21 0 272 244 59 59 chr4 29268522 29268641 -173059706 + L2 LINE L2 2641 2759 -555 567 236 0 0 chr4 29268645 29268755 -173059592 + MLT2C1 LTR ERVL 248 357 -40 207 211 33 22 chr4 29268759 29268849 -173059498 + (CATATA)n Simple_repeat Simple_repeat 4 94 0 285 109 0 0 chr4 29268878 29268924 -173059423 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 320 51 0 0 chr4 29268927 29268966 -173059381 + MLT2C1 LTR ERVL 357 395 -2 1141 278 72 69 chr4 29269024 29269566 -173058781 + MLT1G1 LTR MaLR 49 595 0 545 292 65 6 chr4 29269608 29269776 -173058571 + L2 LINE L2 3134 3311 -2 184 141 22 76 chr4 29269800 29269892 -173058455 + CT-rich Low_complexity Low_complexity 3 89 0 2090 112 3 3 chr4 29270011 29270307 -173058040 + AluSq SINE Alu 1 296 -17 694 266 3 121 chr4 29271200 29271490 -173056857 - L2 LINE L2 -8 3264 3009 1864 156 23 0 chr4 29271490 29271791 -173056556 + AluSx SINE Alu 1 308 -4 15411 52 32 0 chr4 29271791 29274450 -173053897 + L1PA6 LINE L1 3445 6135 -19 465 19 0 0 chr4 29274450 29274504 -173053843 + (TA)n Simple_repeat Simple_repeat 1 54 0 228 35 0 0 chr4 29274505 29274534 -173053813 + (GA)n Simple_repeat Simple_repeat 2 30 0 318 50 0 0 chr4 29274612 29274652 -173053695 + (GA)n Simple_repeat Simple_repeat 1 40 0 220 291 18 0 chr4 29275632 29275687 -173052660 - L2 LINE L2 -7 3265 3210 387 175 0 25 chr4 29276156 29276236 -173052111 + MLT1K LTR MaLR 493 570 -18 1976 157 63 23 chr4 29276833 29277155 -173051192 + MLT1A1 LTR MaLR 1 340 -25 2563 101 30 52 chr4 29277155 29277562 -173050785 - MER48 LTR ERV1 0 398 1 1976 157 63 23 chr4 29277562 29277590 -173050757 + MLT1A1 LTR MaLR 340 365 0 25 0 0 0 chr4 29278690 29278715 -173049632 + AT_rich Low_complexity Low_complexity 1 25 0 566 143 65 39 chr4 29278813 29278967 -173049380 - MER96B DNA MER1_type? -20 397 240 1966 142 70 25 chr4 29279121 29279480 -173048867 - THE1C LTR MaLR 0 375 1 478 250 183 6 chr4 29279544 29279724 -173048623 - MIR SINE MIR -36 226 15 257 316 168 57 chr4 29279761 29280005 -173048342 - L3 LINE CR1 -5 1572 1302 281 333 113 21 chr4 29280193 29280334 -173048013 + L2 LINE L2 3110 3263 -9 283 298 8 73 chr4 29280430 29280554 -173047793 + MIR SINE MIR 20 135 -127 687 265 82 8 chr4 29281930 29282322 -173046025 + LTR33 LTR ERVL 47 519 -2 658 294 95 47 chr4 29282407 29282819 -173045528 - L2 LINE L2 -1 3312 2870 2322 99 0 0 chr4 29282819 29283132 -173045215 + AluSq SINE Alu 1 313 0 658 294 95 47 chr4 29283132 29283334 -173045013 - L2 LINE L2 -443 2870 2679 1464 18 0 0 chr4 29284062 29284230 -173044117 - L1PA4 LINE L1 0 6155 5988 1883 18 14 0 chr4 29284230 29284448 -173043899 + L1PA4 LINE L1 5639 5859 -296 260 149 21 0 chr4 29284683 29284730 -173043617 + L2 LINE L2 3225 3272 0 562 231 31 38 chr4 29284883 29285043 -173043304 - MIR SINE MIR -76 186 28 638 264 25 0 chr4 29285311 29285470 -173042877 + MIR SINE MIR 88 250 -12 240 35 0 0 chr4 29285479 29285508 -173042839 + (TCC)n Simple_repeat Simple_repeat 3 31 0 227 271 86 0 chr4 29285514 29285584 -173042763 + L2 LINE L2 3007 3082 -190 218 274 0 0 chr4 29285670 29285721 -173042626 + (CATA)n Simple_repeat Simple_repeat 1 51 0 220 337 12 0 chr4 29285732 29285818 -173042529 + L2 LINE L2 3182 3268 -4 210 71 0 0 chr4 29286456 29286484 -173041863 + (A)n Simple_repeat Simple_repeat 1 28 0 2092 131 50 34 chr4 29286696 29287054 -173041293 - THE1B LTR MaLR 0 364 1 2948 165 48 91 chr4 29288392 29289223 -173039124 + MER4E LTR ERV1 1 903 0 352 211 266 0 chr4 29289407 29289535 -173038812 + MER5A DNA MER1_type 10 171 -18 3452 152 8 2 chr4 29289702 29290230 -173038117 + LTR26B LTR ERV1 1 531 0 1956 134 7 13 chr4 29290317 29290615 -173037732 - AluJb SINE Alu -16 296 1 539 144 0 0 chr4 29340804 29340894 -172987453 + AluY SINE Alu 213 302 -9 2464 125 17 6 chr4 29341194 29341554 -172986793 - THE1B LTR MaLR 0 364 1 1488 156 11 40 chr4 29341955 29342231 -172986116 + MLT2B3 LTR ERVL 1 268 -286 989 152 0 33 chr4 29342221 29342405 -172985942 + MLT2B2 LTR ERVL 336 513 -2 * 1054 168 59 9 chr4 29342406 29342626 -172985721 - LTR47B LTR ERVL 0 443 213 445 285 42 7 chr4 29342884 29343028 -172985319 - MIR SINE MIR -68 194 46 188 83 0 28 chr4 29343782 29343818 -172984529 + (TTTTG)n Simple_repeat Simple_repeat 5 39 0 696 307 14 5 chr4 29343933 29344148 -172984199 - MIR SINE MIR 0 262 46 2292 146 48 26 chr4 29344889 29345307 -172983040 + MSTA LTR MaLR 1 427 -1 644 204 67 80 chr4 29345485 29345710 -172982637 - L2 LINE L2 0 3313 3092 227 224 45 0 chr4 29345751 29345818 -172982529 + L1M4 LINE L1 3835 3904 -2242 3251 286 69 14 chr4 29345843 29347171 -172981176 - L2 LINE L2 -167 3146 1746 467 262 12 30 chr4 29347199 29347363 -172980984 + MER97b DNA MER1_type? 2 162 -891 3080 225 47 4 chr4 29347463 29348404 -172979943 + L1M4 LINE L1 2423 3403 -2743 491 144 0 10 chr4 29348444 29348541 -172979806 + L1MB7 LINE L1 6089 6184 0 504 211 48 81 chr4 29349807 29350016 -172978331 - MLT1K LTR MaLR -61 527 326 3944 106 0 4 chr4 29350201 29350730 -172977617 + MER1A DNA MER1_type 1 527 0 2196 127 3 0 chr4 29351081 29351389 -172976958 - AluSx SINE Alu -3 309 1 2135 62 0 0 chr4 29352448 29352705 -172975642 + AluY SINE Alu 45 301 -10 1644 175 3 52 chr4 29352926 29353234 -172975113 - AluJo SINE Alu -19 293 1 1786 128 56 0 chr4 29353785 29354089 -172974258 - MER83C LTR ERV1 -3 370 50 1038 227 76 67 chr4 29354463 29354817 -172973530 - MLT1C LTR MaLR 0 467 107 2129 142 0 0 chr4 29354817 29355126 -172973221 - AluSx SINE Alu -3 309 1 1038 227 76 67 chr4 29355126 29355234 -172973113 - MLT1C LTR MaLR -360 107 1 2298 101 3 3 chr4 29355317 29355624 -172972723 - AluY SINE Alu -4 307 1 1812 192 3 3 chr4 29356083 29356395 -172971952 - AluJb SINE Alu 0 312 1 2441 80 0 22 chr4 29356803 29357116 -172971231 + AluY SINE Alu 1 306 -5 30 83 0 0 chr4 29357555 29357627 -172970720 + AT_rich Low_complexity Low_complexity 1 72 0 748 274 118 44 chr4 29357798 29357934 -172970413 - L2 LINE L2 -1 3312 3187 2634 87 3 43 chr4 29357934 29357976 -172970371 - THE1C LTR MaLR 0 375 333 2243 107 0 16 chr4 29357976 29358284 -172970063 + AluY SINE Alu 9 311 0 2634 87 3 43 chr4 29358284 29358632 -172969715 - THE1C LTR MaLR -42 333 1 748 274 118 44 chr4 29358632 29358860 -172969487 - L2 LINE L2 -126 3187 2921 24 53 0 0 chr4 29359950 29359988 -172968359 + AT_rich Low_complexity Low_complexity 1 38 0 279 54 0 0 chr4 29359993 29360030 -172968317 + (TG)n Simple_repeat Simple_repeat 2 38 0 385 188 157 133 chr4 29360260 29360534 -172967813 - HAL1b LINE L1 -339 1009 743 846 78 0 0 chr4 29360534 29360649 -172967698 + (TTCC)n Simple_repeat Simple_repeat 3 117 0 1928 172 0 7 chr4 29360657 29360959 -172967388 - AluJb SINE Alu -4 308 9 385 188 157 133 chr4 29360959 29361040 -172967307 - HAL1b LINE L1 -611 737 659 1590 187 96 3 chr4 29361040 29361372 -172966975 - MLT1A1 LTR MaLR -2 363 1 385 188 157 133 chr4 29361372 29361426 -172966921 - HAL1b LINE L1 -689 659 580 704 263 67 10 chr4 29361434 29361643 -172966704 + MIR SINE MIR 17 237 -25 280 169 84 12 chr4 29363247 29363330 -172965017 + MER3 DNA MER1_type 80 168 -41 1536 162 52 11 chr4 29363338 29363702 -172964645 + MER3 DNA MER1_type 2246 2624 0 227 296 23 45 chr4 29364585 29364673 -172963674 + MIR SINE MIR 22 107 -155 208 339 61 74 chr4 29364679 29364909 -172963438 - MIR SINE MIR -11 251 25 186 103 0 0 chr4 29365619 29365648 -172962699 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 2018 117 0 4 chr4 29365858 29366132 -172962215 - AluSx SINE Alu -11 301 29 23 0 0 0 chr4 29367161 29367184 -172961163 + AT_rich Low_complexity Low_complexity 1 23 0 3839 181 32 17 chr4 29367196 29368369 -172959978 - L1MB4 LINE L1 -71 6109 4919 553 299 70 15 chr4 29369237 29369438 -172958909 + MIR SINE MIR 32 243 -19 376 323 114 6 chr4 29369496 29369654 -172958693 - MIR SINE MIR -86 176 2 183 273 30 30 chr4 29369715 29369781 -172958566 - L2 LINE L2 -212 3060 2995 326 347 47 35 chr4 29370767 29370937 -172957410 + MIR3 SINE MIR 5 176 -32 27 0 0 0 chr4 29371032 29371059 -172957288 + AT_rich Low_complexity Low_complexity 1 27 0 2002 129 7 0 chr4 29371193 29371473 -172956874 + AluSx SINE Alu 1 282 -30 39 22 0 0 chr4 29371484 29371530 -172956817 + AT_rich Low_complexity Low_complexity 1 46 0 1266 274 63 61 chr4 29371585 29371984 -172956363 - MLT1E LTR MaLR 0 593 196 2135 116 27 3 chr4 29371984 29372285 -172956062 + AluSq SINE Alu 6 313 0 1266 274 63 61 chr4 29372285 29372364 -172955983 - MLT1E LTR MaLR -397 196 119 2961 160 41 8 chr4 29372364 29372900 -172955447 - MER41C LTR ERV1 0 554 1 1266 274 63 61 chr4 29372900 29373008 -172955339 - MLT1E LTR MaLR -474 119 5 246 32 0 0 chr4 29374052 29374083 -172954264 + (TA)n Simple_repeat Simple_repeat 2 32 0 1726 47 9 9 chr4 29374084 29374297 -172954050 - AluY SINE Alu -8 303 91 22 0 0 0 chr4 29374297 29374319 -172954028 + AT_rich Low_complexity Low_complexity 1 22 0 217 295 0 0 chr4 29374333 29374394 -172953953 - MIR SINE MIR -108 154 94 * 407 222 20 10 chr4 29374389 29374488 -172953859 + MIR SINE MIR 124 223 -39 2647 144 2 7 chr4 29375583 29376019 -172952328 + MER57B LTR ERV1 1 434 0 1366 183 125 12 chr4 29376155 29376483 -172951864 + MLT1A1 LTR MaLR 1 365 0 358 255 29 29 chr4 29377354 29377456 -172950891 + MIR SINE MIR 4 105 -157 379 300 29 21 chr4 29378169 29378309 -172950038 - MIR SINE MIR -102 160 20 823 123 7 7 chr4 29379333 29379479 -172948868 + (TTCC)n Simple_repeat Simple_repeat 2 147 0 200 274 48 0 chr4 29379480 29379542 -172948805 - L2 LINE L2 0 3313 3249 * 1694 258 140 13 chr4 29379538 29380061 -172948286 - L2 LINE L2 -399 2915 2327 1702 196 51 11 chr4 29380061 29380434 -172947913 + LTR32 LTR ERVL 15 402 -69 827 267 164 9 chr4 29380541 29380882 -172947465 - L2 LINE L2 -1042 2272 1879 185 77 0 0 chr4 29381289 29381315 -172947032 - L2 LINE L2 -15 3298 3273 5868 80 36 51 chr4 29381445 29382835 -172945512 + L1PA10 LINE L1 4792 6168 0 2405 84 0 0 chr4 29383434 29383733 -172944614 + AluY SINE Alu 1 299 -12 294 370 15 0 chr4 29384163 29384298 -172944049 - MIR SINE MIR -17 245 109 277 266 133 41 chr4 29386480 29386698 -172941649 + Charlie8 DNA MER1_type 13 250 -2167 758 256 0 37 chr4 29386703 29386945 -172941402 - MER106A DNA MER1_type -3 233 1 213 206 88 44 chr4 29387347 29387415 -172940932 - L2 LINE L2 -10 3303 3233 853 187 60 11 chr4 29387879 29388061 -172940286 + MLT1A1 LTR MaLR 13 203 -162 2044 149 29 0 chr4 29388068 29388417 -172939930 - THE1B LTR MaLR 0 364 6 1012 167 17 0 chr4 29388397 29388577 -172939770 + MLT1A1 LTR MaLR 183 365 0 * 699 275 110 64 chr4 29389005 29389460 -172938887 - MLT1K LTR MaLR 0 476 1 236 313 60 0 chr4 29389461 29389544 -172938803 - MLT1K LTR MaLR -484 104 17 1788 162 40 0 chr4 29389999 29390301 -172938046 + AluSq SINE Alu 1 313 0 711 156 23 23 chr4 29390482 29390610 -172937737 + FLAM_A SINE Alu 1 128 -5 213 121 0 0 chr4 29391896 29391929 -172936418 + (TTTC)n Simple_repeat Simple_repeat 1 33 0 186 189 0 0 chr4 29392553 29392590 -172935757 + (TG)n Simple_repeat Simple_repeat 1 37 0 545 238 19 62 chr4 29392926 29393086 -172935261 + MIR SINE MIR 13 165 -97 316 296 24 32 chr4 29393153 29393278 -172935069 + MLT2E LTR ERVL 32 155 -473 185 327 20 20 chr4 29393607 29393708 -172934639 + MIR SINE MIR 159 259 -3 269 247 90 11 chr4 29393849 29393938 -172934409 + MIR SINE MIR 142 237 -25 2087 94 0 62 chr4 29396183 29396492 -172931855 - AluSx SINE Alu -22 290 1 1918 142 62 30 chr4 29397211 29397584 -172930763 + Tigger2 DNA MER2_type 2334 2718 0 222 114 57 29 chr4 29397597 29397702 -172930645 + (TA)n Simple_repeat Simple_repeat 1 108 0 28 61 0 0 chr4 29397759 29397808 -172930539 + AT_rich Low_complexity Low_complexity 1 49 0 236 152 30 40 chr4 29397854 29397953 -172930394 + (TA)n Simple_repeat Simple_repeat 1 98 0 24 0 0 0 chr4 29397966 29397990 -172930357 + AT_rich Low_complexity Low_complexity 1 24 0 2488 66 0 0 chr4 29397991 29398296 -172930051 + AluY SINE Alu 1 305 -6 213 273 18 18 chr4 29398336 29398391 -172929956 - MIR SINE MIR -63 145 91 414 304 9 9 chr4 29398902 29399017 -172929330 - MIR3 SINE MIR -11 197 83 1460 203 0 30 chr4 29399084 29399355 -172928992 + AluJb SINE Alu 1 263 -49 293 229 16 0 chr4 29399385 29399446 -172928901 - MER81 DNA DNA -52 62 1 227 260 20 0 chr4 29399574 29399624 -172928723 + L2 LINE L2 3263 3313 0 351 272 119 55 chr4 29400704 29400906 -172927441 - MIR SINE MIR 0 262 48 199 340 0 20 chr4 29401418 29401468 -172926879 - L2 LINE L2 -86 3186 3138 204 211 0 0 chr4 29401599 29401637 -172926710 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 268 335 102 36 chr4 29401987 29402262 -172926085 - L2 LINE L2 -598 2716 2424 403 288 91 8 chr4 29403024 29403156 -172925191 - MIR3 SINE MIR -7 201 59 6628 223 32 38 chr4 29403273 29403374 -172924973 - L1MB1 LINE L1 -14 5999 5899 2349 98 0 0 chr4 29403374 29403671 -172924676 - AluSq SINE Alu -16 297 1 6628 223 32 38 chr4 29403671 29404349 -172923998 - L1MB1 LINE L1 -114 5899 5219 2207 103 31 0 chr4 29404349 29404640 -172923707 - AluSq SINE Alu -13 300 1 6628 223 32 38 chr4 29404640 29406668 -172921679 - L1MB1 LINE L1 -794 5219 3203 1482 259 70 2 chr4 29406670 29407183 -172921164 - L1MB1 LINE L1 -4668 1223 676 813 304 34 52 chr4 29407370 29407758 -172920589 - L1MB1 LINE L1 -5507 384 4 527 156 52 0 chr4 29407832 29407928 -172920419 - HY1 scRNA scRNA -5 107 7 804 290 71 12 chr4 29407987 29408325 -172920022 - LTR16C LTR ERVL 0 491 134 1060 261 117 52 chr4 29408748 29409439 -172918908 + L2 LINE L2 2557 3313 0 675 298 50 30 chr4 29409590 29409918 -172918429 + L3 LINE CR1 1198 1576 -1 2534 37 20 0 chr4 29410242 29410539 -172917808 + AluY SINE Alu 1 303 -8 208 318 0 0 chr4 29410723 29410786 -172917561 - MER5A DNA MER1_type -83 106 44 2313 102 6 10 chr4 29411471 29411785 -172916562 + AluSq SINE Alu 1 313 0 368 303 46 14 chr4 29412484 29413027 -172915320 + L1ME4a LINE L1 5485 6119 -2 257 276 26 0 chr4 29413269 29413345 -172915002 - MLT1I LTR MaLR -13 396 319 3022 36 6 0 chr4 29413387 29413751 -172914596 - L1PA4 LINE L1 0 6155 5790 6775 47 10 8 chr4 29413853 29414767 -172913580 - L1P LINE L1 -2569 3577 2659 2106 112 0 3 chr4 29414767 29415052 -172913295 - AluSq SINE Alu -29 284 1 6775 47 10 8 chr4 29415052 29415073 -172913274 - L1P LINE L1 -3487 2659 2640 282 300 208 0 chr4 29415197 29415327 -172913020 - MLT1I LTR MaLR -249 160 4 316 228 76 11 chr4 29416739 29416831 -172911516 + MLT1L LTR MaLR 1 98 -517 406 277 116 40 chr4 29416980 29417258 -172911089 + MLT1J LTR MaLR 224 602 -13 2218 167 86 2 chr4 29417258 29417653 -172910694 + MSTC LTR MaLR 1 428 0 406 277 116 40 chr4 29417653 29417669 -172910678 + MLT1J LTR MaLR 602 615 0 569 366 88 12 chr4 29417680 29418144 -172910203 + L2 LINE L2 2514 3018 -254 * 622 283 158 22 chr4 29418136 29418458 -172909889 - L2 LINE L2 -870 2444 2079 397 356 0 0 chr4 29418519 29418637 -172909710 + L2 LINE L2 3150 3267 -5 632 265 53 97 chr4 29418997 29419543 -172908804 - MER34 LTR ERV1 0 542 20 2531 107 3 27 chr4 29419543 29419916 -172908431 - THE1B LTR MaLR 0 364 1 632 265 53 97 chr4 29419916 29419936 -172908411 - MER34 LTR ERV1 -522 20 1 530 158 0 11 chr4 29420048 29420142 -172908205 + MLT1B LTR MaLR 1 93 -297 2399 136 24 24 chr4 29420142 29420561 -172907786 - MSTC LTR MaLR 0 428 10 1042 195 62 33 chr4 29420570 29420932 -172907415 + MLT1B LTR MaLR 89 390 0 207 275 18 64 chr4 29420933 29421042 -172907305 - MIR SINE MIR -72 190 87 1285 249 80 56 chr4 29421194 29421732 -172906615 - MLT1E LTR MaLR -7 586 36 409 210 129 32 chr4 29421748 29421872 -172906475 - MIR SINE MIR -125 137 2 978 226 37 5 chr4 29422018 29422235 -172906112 - MER58A DNA MER1_type 0 224 1 7465 33 2 0 chr4 29422905 29424522 -172903825 + L1PA3 LINE L1 4536 6155 0 220 103 23 92 chr4 29424753 29424840 -172903507 + (TTATA)n Simple_repeat Simple_repeat 1 81 0 21 36 0 0 chr4 29425011 29425039 -172903308 + AT_rich Low_complexity Low_complexity 1 28 0 1383 149 5 5 chr4 29426105 29426326 -172902021 + AluSg/x SINE Alu 84 304 -8 393 247 240 32 chr4 29426585 29426739 -172901608 + MER5A DNA MER1_type 4 189 0 267 245 94 50 chr4 29426943 29427102 -172901245 + HAL1b LINE L1 748 913 -435 300 282 9 45 chr4 29427145 29427255 -172901092 + HAL1b LINE L1 797 902 -446 665 155 0 8 chr4 29428062 29428195 -172900152 + L1MC2 LINE L1 5981 6116 -221 230 307 0 11 chr4 29428679 29428767 -172899580 - MLT1I LTR MaLR -236 173 87 966 205 51 9 chr4 29429559 29429774 -172898573 - MLT1C LTR MaLR 0 467 244 911 191 37 48 chr4 29429782 29430089 -172898258 - MLT1B LTR MaLR -155 235 1 627 42 32 0 chr4 29430250 29430345 -172898002 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 21 36 0 0 chr4 29431615 29431643 -172896704 + AT_rich Low_complexity Low_complexity 1 28 0 342 0 0 0 chr4 29433038 29433076 -172895271 + (TTA)n Simple_repeat Simple_repeat 3 40 0 3388 57 4 50 chr4 29433077 29433555 -172894792 - L1PA7 LINE L1 -19 6135 5680 22 0 0 0 chr4 29433730 29433752 -172894595 + AT_rich Low_complexity Low_complexity 1 22 0 382 244 23 0 chr4 29433868 29433954 -172894393 + L2 LINE L2 3222 3309 -4 1386 189 85 74 chr4 29434676 29435135 -172893212 + MER31B LTR ERV1 3 466 0 198 0 0 0 chr4 29435368 29435390 -172892957 + (T)n Simple_repeat Simple_repeat 1 22 0 208 163 0 23 chr4 29436590 29436633 -172891714 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr4 29437529 29437549 -172890798 + (TTA)n Simple_repeat Simple_repeat 2 21 0 26 0 0 0 chr4 29438053 29438079 -172890268 + AT_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr4 29439108 29439134 -172889213 + (T)n Simple_repeat Simple_repeat 1 26 0 25 31 0 0 chr4 29439250 29439282 -172889065 + AT_rich Low_complexity Low_complexity 1 32 0 237 250 28 28 chr4 29439926 29439998 -172888349 - MIR3 SINE MIR -18 190 119 921 143 42 37 chr4 29440212 29440401 -172887946 + THE1C LTR MaLR 1 190 -185 530 164 214 50 chr4 29440536 29440695 -172887652 + THE1C LTR MaLR 180 364 0 516 277 54 127 chr4 29441327 29441898 -172886449 - L2 LINE L2 -1 3312 2791 1233 221 178 72 chr4 29441898 29442386 -172885961 + MLT1F LTR MaLR 1 540 -2 516 277 54 127 chr4 29442386 29442420 -172885927 - L2 LINE L2 -522 2791 2756 2002 140 0 41 chr4 29442748 29443062 -172885285 - AluSx SINE Alu -11 301 1 624 148 0 52 chr4 29443661 29443796 -172884551 - L1MA9 LINE L1 -300 6012 5885 337 294 32 121 chr4 29444965 29445247 -172883100 + MIR SINE MIR 6 262 0 263 263 0 0 chr4 29446095 29446152 -172882195 - L2 LINE L2 0 3313 3257 310 376 31 12 chr4 29446616 29446778 -172881569 + L2 LINE L2 2611 2775 -539 481 313 101 10 chr4 29447832 29448030 -172880317 - MIR SINE MIR -28 234 19 22 56 0 0 chr4 29449448 29449484 -172878863 + AT_rich Low_complexity Low_complexity 1 36 0 337 268 62 0 chr4 29450666 29450763 -172877584 - MIR SINE MIR 0 262 160 6283 31 2 0 chr4 29451618 29452697 -172875650 - L1P2 LINE L1 -478 5677 4598 633 221 11 33 chr4 29452797 29452978 -172875369 + L1MC1 LINE L1 6138 6314 -19 1652 182 18 0 chr4 29453064 29453350 -172874997 - AluJo SINE Alu -21 291 1 1796 160 0 36 chr4 29453380 29453499 -172874848 + AluSx SINE Alu 1 123 -189 2136 134 3 13 chr4 29453499 29453806 -172874541 - AluSq SINE Alu -9 304 1 1796 160 0 36 chr4 29453806 29453992 -172874355 + AluSx SINE Alu 123 295 -17 312 278 11 0 chr4 29454285 29454375 -172873972 - MER117 DNA MER1_type -40 157 67 2076 144 36 30 chr4 29455669 29456031 -172872316 - THE1B LTR MaLR 0 364 1 503 113 14 0 chr4 29456282 29456353 -172871994 + AluS SINE Alu 3 74 -239 421 330 39 17 chr4 29456655 29456834 -172871513 + L3b LINE CR1 1283 1465 -118 2218 111 0 10 chr4 29457485 29457782 -172870565 + AluSx SINE Alu 1 294 -18 469 246 91 69 chr4 29457794 29457923 -172870424 + MLT1J1 LTR MaLR 8 148 -302 643 240 44 16 chr4 29457923 29458106 -172870241 + MER5A DNA MER1_type 2 189 0 469 246 91 69 chr4 29458106 29458198 -172870149 + MLT1J1 LTR MaLR 148 237 -213 281 321 6 6 chr4 29458633 29458747 -172869600 + MIR SINE MIR 46 159 -49 183 313 192 28 chr4 29458736 29458950 -172869397 - L2 LINE L2 -74 3239 2991 * 1109 253 29 12 chr4 29459374 29459789 -172868558 - L1MCc LINE L1 -3593 3348 2927 845 277 42 40 chr4 29459792 29460312 -172868035 - L1MCc LINE L1 -4191 2931 2411 565 287 65 36 chr4 29460315 29461035 -172867312 - L1MCc LINE L1 -4970 1453 1129 455 298 63 54 chr4 29461371 29461800 -172866547 - L1MCc LINE L1 -5970 453 21 212 213 11 128 chr4 29462925 29463019 -172865328 + L2 LINE L2 3136 3218 -54 409 337 47 17 chr4 29463254 29463426 -172864921 + L2 LINE L2 3128 3304 -9 180 77 0 0 chr4 29463427 29463453 -172864894 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 603 288 64 13 chr4 29464087 29464320 -172864027 + LTR16A1 LTR ERVL 213 457 0 302 259 9 52 chr4 29465249 29465365 -172862982 + MLT1L LTR MaLR 90 200 -415 331 330 51 35 chr4 29465422 29465619 -172862728 - L3 LINE CR1 -551 1026 827 2292 92 0 32 chr4 29466354 29466670 -172861677 + AluSx SINE Alu 4 309 -3 257 317 10 39 chr4 29466728 29466936 -172861411 + L1ME LINE L1 5143 5344 -802 340 312 68 44 chr4 29466958 29467074 -172861273 + L1ME LINE L1 5366 5491 -671 1469 206 36 36 chr4 29467074 29467439 -172860908 + MLT1A1 LTR MaLR 1 365 0 340 312 68 44 chr4 29467439 29467527 -172860820 + L1ME LINE L1 5491 5575 -587 1250 158 5 5 chr4 29467540 29467743 -172860604 + AluJo SINE Alu 1 203 -109 345 100 36 45 chr4 29468043 29468153 -172860194 + (TA)n Simple_repeat Simple_repeat 2 110 0 268 320 65 20 chr4 29468156 29468356 -172859991 + L1ME LINE L1 5616 5824 -297 1066 275 67 26 chr4 29468388 29468730 -172859617 + L2 LINE L2 2958 3313 0 312 333 18 0 chr4 29468755 29468866 -172859481 + LTR16A LTR ERVL 338 450 0 712 189 0 0 chr4 29468945 29469072 -172859275 + LTR16A LTR ERVL 241 367 -83 25 0 0 0 chr4 29470447 29470472 -172857875 + AT_rich Low_complexity Low_complexity 1 25 0 316 203 43 0 chr4 29470851 29470920 -172857427 - MLT-int LTR MaLR -988 747 676 2858 207 16 36 chr4 29471055 29471465 -172856882 - MLT1A2-int LTR MaLR -1075 660 267 2056 144 3 0 chr4 29471465 29471763 -172856584 - AluSx SINE Alu -8 304 6 2858 207 16 36 chr4 29471763 29472024 -172856323 - MLT1A2-int LTR MaLR -1468 267 2 1166 206 187 9 chr4 29472025 29472341 -172856006 - MLT1A2 LTR MaLR -2 372 1 216 158 0 0 chr4 29473243 29473281 -172855066 + (TG)n Simple_repeat Simple_repeat 1 38 0 1953 153 51 56 chr4 29473774 29474166 -172854181 + MLT1B LTR MaLR 1 390 0 848 200 48 0 chr4 29474701 29474846 -172853501 + FRAM SINE Alu 1 151 -25 734 259 175 37 chr4 29475718 29476204 -172852143 - MLT1H1 LTR MaLR -2 553 1 1942 170 7 58 chr4 29476234 29476645 -172851702 - MLT1B LTR MaLR 0 390 1 349 353 69 34 chr4 29476809 29477129 -172851218 + MLT1K LTR MaLR 194 524 -64 2137 131 0 28 chr4 29477358 29477679 -172850668 + AluSx SINE Alu 1 312 0 236 53 26 0 chr4 29477689 29477727 -172850620 + (TC)n Simple_repeat Simple_repeat 2 40 0 809 220 6 0 chr4 29478265 29478438 -172849909 + LTR47B LTR ERVL 1 174 -269 276 146 0 54 chr4 29478694 29478750 -172849597 - L1PB4 LINE L1 -2 6154 6105 2189 64 8 0 chr4 29480766 29481030 -172847317 - AluY SINE Alu -17 294 29 488 239 69 38 chr4 29482339 29482498 -172845849 - MIR3 SINE MIR -9 199 36 247 238 127 0 chr4 29482973 29483036 -172845311 - MIR SINE MIR -104 158 88 2252 104 0 3 chr4 29483287 29483596 -172844751 - AluY SINE Alu -3 308 1 382 343 99 37 chr4 29483706 29484088 -172844259 + L2 LINE L2 2550 2955 -359 2047 229 10 6 chr4 29484237 29484726 -172843621 + L1ME1 LINE L1 5433 5923 -243 976 195 18 12 chr4 29484738 29485035 -172843312 - MER2 DNA MER2_type -9 336 3 447 256 20 20 chr4 29485123 29485322 -172843025 + L1MA10 LINE L1 5977 6334 0 462 289 127 38 chr4 29485589 29485928 -172842419 - MLT1J2 LTR MaLR 0 450 82 428 263 72 68 chr4 29486475 29486832 -172841515 + MLT1J LTR MaLR 27 450 -59 2110 132 3 0 chr4 29487422 29487718 -172840629 + AluSg SINE Alu 1 297 -13 261 278 61 91 chr4 29487905 29488103 -172840244 - MIR SINE MIR -50 212 21 590 281 44 0 chr4 29488173 29488364 -172839983 + MIR SINE MIR 15 213 -49 341 349 27 27 chr4 29488663 29488809 -172839538 - L2 LINE L2 0 3272 3127 402 320 33 28 chr4 29489439 29489620 -172838727 - MIR SINE MIR -78 184 3 283 280 28 28 chr4 29489636 29489743 -172838604 + L1P LINE L1 5318 5424 -742 878 232 21 11 chr4 29489755 29489945 -172838402 - MER58A DNA MER1_type -32 192 1 23 33 0 0 chr4 29489954 29489984 -172838363 + AT_rich Low_complexity Low_complexity 1 30 0 210 195 39 0 chr4 29490353 29490430 -172837917 + GA-rich Low_complexity Low_complexity 3 82 0 706 284 31 5 chr4 29490710 29490904 -172837443 + MIR SINE MIR 46 244 -18 2014 91 4 0 chr4 29490950 29491203 -172837144 + AluSx SINE Alu 1 254 -58 499 269 107 0 chr4 29491330 29491479 -172836868 + MIR SINE MIR 21 185 -77 422 320 33 0 chr4 29493835 29493988 -172834359 - MIR SINE MIR -58 204 47 1966 143 76 29 chr4 29495981 29496254 -172832093 + THE1B LTR MaLR 1 295 -69 2228 112 0 3 chr4 29496254 29496550 -172831797 - AluSg SINE Alu -15 295 1 1966 143 76 29 chr4 29496550 29496619 -172831728 + THE1B LTR MaLR 295 359 -5 934 279 54 54 chr4 29496733 29497092 -172831255 + MLT1G1 LTR MaLR 1 423 -172 195 286 48 16 chr4 29497199 29497262 -172831085 - MIR SINE MIR -121 87 23 430 233 98 15 chr4 29498722 29498855 -172829492 + MIR SINE MIR 30 173 -89 22 0 0 0 chr4 29498995 29499017 -172829330 + AT_rich Low_complexity Low_complexity 1 22 0 2241 123 7 0 chr4 29499047 29499357 -172828990 + AluSx SINE Alu 1 312 0 934 234 22 26 chr4 29500994 29501225 -172827122 - MIR SINE MIR -22 240 11 254 298 199 7 chr4 29501249 29501390 -172826957 - MIR SINE MIR -68 194 27 297 277 39 62 chr4 29501422 29501552 -172826795 + MIR SINE MIR 48 174 -88 2711 122 3 8 chr4 29502629 29503006 -172825341 - THE1C LTR MaLR 0 375 1 11108 107 20 39 chr4 29503006 29504033 -172824314 - THE1C-int LTR MaLR 0 1580 592 2291 115 0 6 chr4 29504033 29504345 -172824002 - AluSg SINE Alu 0 310 1 11108 107 20 39 chr4 29504345 29504927 -172823420 - THE1C-int LTR MaLR -988 592 1 2461 111 35 24 chr4 29504927 29505298 -172823049 - THE1C LTR MaLR 0 375 1 247 258 83 144 chr4 29505535 29505764 -172822583 - MLT1-int LTR MaLR -129 1242 1028 1975 219 20 67 chr4 29506596 29507107 -172821240 + MLT1D LTR MaLR 1 487 -18 2698 129 0 3 chr4 29507275 29507640 -172820707 - THE1B LTR MaLR 0 364 1 859 251 29 14 chr4 29508515 29508722 -172819625 + MER63A DNA MER1_type 1 210 0 3122 168 25 39 chr4 29508738 29508985 -172819362 + LTR69 LTR ERVL 1 250 -338 1945 156 64 22 chr4 29508985 29509345 -172819002 + THE1C LTR MaLR 1 375 0 3122 168 25 39 chr4 29509345 29509380 -172818967 + LTR69 LTR ERVL 250 284 -304 198 0 0 0 chr4 29509380 29509402 -172818945 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 3122 168 25 39 chr4 29509402 29509712 -172818635 + LTR69 LTR ERVL 284 586 -2 292 293 45 27 chr4 29510731 29510943 -172817404 + L1ME LINE L1 5656 5875 -287 232 344 90 8 chr4 29512560 29512682 -172815665 - MIR SINE MIR -100 162 31 180 97 0 0 chr4 29512726 29512757 -172815590 + (TATATG)n Simple_repeat Simple_repeat 4 34 0 185 311 94 57 chr4 29513027 29513133 -172815214 + L2 LINE L2 3199 3308 -5 522 285 140 0 chr4 29513905 29514112 -172814235 + MIR SINE MIR 1 236 -26 1699 207 3 0 chr4 29515306 29515601 -172812746 + AluJb SINE Alu 1 296 -16 356 163 35 23 chr4 29515994 29516080 -172812267 - L1ME4a LINE L1 -9 6112 6026 1839 226 0 29 chr4 29517677 29518053 -172810294 + MLT1A1 LTR MaLR 1 365 0 262 316 120 6 chr4 29518283 29518438 -172809909 + MIR SINE MIR 24 189 -62 1836 145 10 19 chr4 29518997 29519307 -172809040 - MER54B LTR ERVL 0 793 487 * 2119 181 11 8 chr4 29519306 29519670 -172808677 - MER54B LTR ERVL -428 365 1 694 279 110 53 chr4 29519966 29520303 -172808044 + MLT1J2 LTR MaLR 74 429 -21 4511 83 7 0 chr4 29520447 29521012 -172807335 - L1PA8 LINE L1 -3 6169 5601 263 288 0 0 chr4 29521087 29521153 -172807194 + CT-rich Low_complexity Low_complexity 1 66 0 387 348 30 73 chr4 29521153 29521386 -172806961 - L2 LINE L2 -21 3251 3029 183 42 0 0 chr4 29521762 29521786 -172806561 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 259 277 0 53 chr4 29522496 29522590 -172805757 - MIR SINE MIR -20 242 154 220 294 167 10 chr4 29522662 29522764 -172805583 + L2 LINE L2 3155 3272 0 1944 186 17 14 chr4 29524134 29524488 -172803859 + MLT1A1 LTR MaLR 10 364 -1 428 318 0 0 chr4 29524490 29524616 -172803731 - MIR SINE MIR -70 192 67 2218 238 61 23 chr4 29525743 29526351 -172801996 - MLT1E2 LTR MaLR 0 626 3 200 309 99 12 chr4 29526422 29526503 -172801844 - MIR SINE MIR -102 106 19 393 248 115 0 chr4 29526542 29526655 -172801692 - MIR SINE MIR -29 233 108 967 259 55 99 chr4 29526917 29527441 -172800906 + MER34 LTR ERV1 1 501 -41 1840 135 30 76 chr4 29527605 29528002 -172800345 - MER67C LTR ERV1 -242 272 1 557 269 58 53 chr4 29528177 29528556 -172799791 + L1ME4a LINE L1 5735 6115 -6 322 266 32 0 chr4 29528936 29529030 -172799317 + L3 LINE CR1 1392 1488 -89 396 158 0 0 chr4 29529345 29529421 -172798926 + GA-rich Low_complexity Low_complexity 2 77 0 501 309 68 20 chr4 29530477 29530726 -172797621 - MIR SINE MIR 0 262 2 4537 156 86 28 chr4 29531011 29531792 -172796555 - LTR1B LTR ERV1 0 826 1 2298 197 49 33 chr4 29531845 29532357 -172795990 + MLT2B1 LTR ERVL 1 520 0 184 286 18 18 chr4 29532368 29532424 -172795923 + L2 LINE L2 3213 3268 -4 417 290 226 4 chr4 29532774 29533026 -172795321 - L2 LINE L2 -1 3312 3005 320 349 58 21 chr4 29533682 29533871 -172794476 - MIR SINE MIR -19 243 48 481 273 56 19 chr4 29534392 29534553 -172793794 + MIR3 SINE MIR 27 193 -15 342 313 9 9 chr4 29534845 29534960 -172793387 + MIR SINE MIR 100 214 -48 1159 174 18 54 chr4 29535048 29535272 -172793075 + MER20 DNA MER1_type 4 219 0 845 293 87 44 chr4 29536661 29537074 -172791273 - L2 LINE L2 -1 3312 2882 442 309 39 17 chr4 29537353 29537534 -172790813 - MIR SINE MIR -39 223 39 2320 152 31 3 chr4 29538499 29538854 -172789493 - MLT1A1 LTR MaLR 0 365 1 420 264 22 0 chr4 29539426 29539532 -172788815 + MIR SINE MIR 42 156 -52 190 394 8 16 chr4 29540686 29540813 -172787534 - MIR SINE MIR -67 141 16 198 103 0 0 chr4 29541574 29541603 -172786744 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 390 331 40 13 chr4 29542482 29542633 -172785714 - MIR SINE MIR 0 262 108 502 265 76 68 chr4 29542813 29543062 -172785285 - MLT1K LTR MaLR -43 545 295 2094 126 80 37 chr4 29543083 29543432 -172784915 - THE1B LTR MaLR 0 364 1 223 259 0 0 chr4 29543720 29543774 -172784573 + MIR3 SINE MIR 143 196 -12 267 31 0 0 chr4 29544869 29544901 -172783446 + (TA)n Simple_repeat Simple_repeat 2 33 0 2166 105 0 0 chr4 29544901 29545186 -172783161 - AluSq SINE Alu -28 285 1 2250 111 0 0 chr4 29545404 29545701 -172782646 + AluSx SINE Alu 1 297 -15 209 186 0 0 chr4 29546047 29546090 -172782257 + (TGAG)n Simple_repeat Simple_repeat 2 44 0 28 79 0 0 chr4 29547948 29548011 -172780336 + AT_rich Low_complexity Low_complexity 1 63 0 220 259 185 0 chr4 29548579 29548660 -172779687 + MIR SINE MIR 117 212 -50 251 299 34 95 chr4 29549227 29549374 -172778973 - MIR SINE MIR -74 188 51 211 212 96 123 chr4 29549691 29549837 -172778510 + MIR SINE MIR 103 244 -18 1716 191 82 9 chr4 29550314 29550654 -172777693 - MLT1A1 LTR MaLR 0 365 1 308 297 104 25 chr4 29551504 29551706 -172776641 - MIR SINE MIR -12 250 33 270 0 0 0 chr4 29551778 29551808 -172776539 + (TC)n Simple_repeat Simple_repeat 1 30 0 183 129 0 0 chr4 29552459 29552490 -172775857 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 31 0 0 0 chr4 29552923 29552954 -172775393 + AT_rich Low_complexity Low_complexity 1 31 0 338 250 25 0 chr4 29553055 29553135 -172775212 + MLT1L LTR MaLR 195 276 -339 189 243 140 37 chr4 29554433 29554540 -172773807 + MIR3 SINE MIR 90 207 -1 412 300 8 8 chr4 29555028 29555158 -172773189 + MER94 DNA DNA 2 131 -3 180 269 54 43 chr4 29555297 29555390 -172772957 - L3 LINE CR1 -80 1497 1404 711 219 72 75 chr4 29556255 29556394 -172771953 + MLT1J2 LTR MaLR 3 142 -308 2019 140 7 3 chr4 29556394 29556694 -172771653 - AluSx SINE Alu -11 301 1 711 219 72 75 chr4 29556694 29556819 -172771528 + MLT1J2 LTR MaLR 142 266 -184 1006 189 49 0 chr4 29556833 29557018 -172771329 + MER58A DNA MER1_type 12 205 -19 272 217 50 0 chr4 29557077 29557137 -172771210 - MLT1J2 LTR MaLR -129 321 259 283 229 57 0 chr4 29557290 29557360 -172770987 + MLT1J2 LTR MaLR 346 419 -31 310 200 40 27 chr4 29559560 29559635 -172768712 - MER116 DNA Mariner -4 76 1 310 258 55 55 chr4 29559723 29559851 -172768496 + MIR SINE MIR 20 147 -115 219 225 188 0 chr4 29560050 29560130 -172768217 - L2 LINE L2 -6 3266 3172 323 352 120 0 chr4 29561095 29561237 -172767110 - MIR3 SINE MIR -48 160 2 858 282 95 14 chr4 29561389 29561758 -172766589 - MLT1L LTR MaLR -40 575 177 303 274 65 48 chr4 29562498 29562622 -172765725 + MIR SINE MIR 20 145 -117 219 103 0 0 chr4 29562628 29562667 -172765680 + (A)n Simple_repeat Simple_repeat 1 39 0 722 179 0 133 chr4 29562805 29563023 -172765324 + MER53 DNA DNA 1 189 0 22 0 0 0 chr4 29563721 29563743 -172764604 + AT_rich Low_complexity Low_complexity 1 22 0 2026 129 0 19 chr4 29565447 29565757 -172762590 - AluSq SINE Alu -7 306 3 207 146 0 0 chr4 29566175 29566216 -172762131 + (GA)n Simple_repeat Simple_repeat 1 41 0 712 322 83 44 chr4 29566743 29567178 -172761169 - L3 LINE CR1 -1 1576 1125 434 346 54 10 chr4 29567232 29567437 -172760910 - MIR SINE MIR -44 218 5 228 350 0 12 chr4 29567476 29567556 -172760791 - L3 LINE CR1 -488 1089 1011 251 54 0 27 chr4 29567751 29567788 -172760559 + Alu SINE Alu 1 36 -266 1452 121 0 19 chr4 29568300 29568515 -172759832 + AluSg/x SINE Alu 82 292 -20 185 0 40 0 chr4 29568521 29568546 -172759801 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1775 77 0 17 chr4 29568683 29568918 -172759429 - AluSg/x SINE Alu 0 310 80 291 125 71 18 chr4 29569646 29569702 -172758645 + MLT1D LTR MaLR 426 484 -21 1916 147 3 7 chr4 29569806 29570098 -172758249 - AluJo SINE Alu -21 291 1 300 253 51 108 chr4 29570153 29570311 -172758036 + MER5A DNA MER1_type 29 188 -1 2350 172 93 25 chr4 29570327 29570786 -172757561 - MLT1D LTR MaLR 0 505 12 1991 171 33 28 chr4 29570786 29571148 -172757199 - THE1B LTR MaLR 0 364 1 2350 172 93 25 chr4 29571148 29571160 -172757187 - MLT1D LTR MaLR -493 12 2 620 196 0 0 chr4 29572086 29572193 -172756154 - MLT1A2 LTR MaLR -4 370 264 277 191 48 16 chr4 29572195 29572258 -172756089 - MLT1A2 LTR MaLR -309 65 1 735 294 39 57 chr4 29572775 29573160 -172755187 - LTR16B LTR ERVL -86 378 1 201 132 0 0 chr4 29573291 29573329 -172755018 + (TCCCC)n Simple_repeat Simple_repeat 5 42 0 224 154 19 0 chr4 29573854 29573906 -172754441 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 1444 237 69 37 chr4 29574100 29574475 -172753872 - MSTD LTR MaLR -4 392 6 288 365 29 0 chr4 29574483 29574620 -172753727 + MIR3 SINE MIR 37 177 -31 183 242 106 30 chr4 29575219 29575285 -172753062 - L2 LINE L2 -16 3256 3186 860 227 66 110 chr4 29576062 29576590 -172751757 - MLT1D LTR MaLR 0 505 1 234 318 40 32 chr4 29576749 29576875 -172751472 + L2 LINE L2 2708 2834 -480 420 158 1 0 chr4 29576896 29576974 -172751373 + L1M2 LINE L1 5464 5545 -579 1742 161 192 8 chr4 29576975 29577329 -172751018 + MSTA LTR MaLR 2 420 -8 1416 82 16 0 chr4 29577330 29577513 -172750834 + L1M2 LINE L1 5539 5724 -576 244 293 13 0 chr4 29577817 29577892 -172750455 + L2 LINE L2 3235 3310 -3 44127 31 21 1 chr4 29578735 29584767 -172743580 - L1PA2 LINE L1 0 6155 1 4831 105 7 50 chr4 29585383 29586107 -172742240 - L1PA11 LINE L1 0 6174 5482 4391 157 52 33 chr4 29586220 29587022 -172741325 + L1MB1 LINE L1 5303 6123 -45 2428 55 0 48 chr4 29587022 29587332 -172741015 + AluY SINE Alu 1 295 -16 4391 157 52 33 chr4 29587332 29587374 -172740973 + L1MB1 LINE L1 6123 6163 -5 280 271 35 83 chr4 29588791 29588935 -172739412 - MER5A DNA MER1_type -1 188 52 672 304 42 82 chr4 29589254 29589451 -172738896 + L2 LINE L2 2804 3007 -306 2337 91 10 0 chr4 29589451 29589749 -172738598 - AluSc SINE Alu -8 301 1 672 304 42 82 chr4 29589749 29589892 -172738455 + L2 LINE L2 3007 3186 -127 34 65 0 0 chr4 29589892 29589954 -172738393 + AT_rich Low_complexity Low_complexity 1 62 0 672 304 42 82 chr4 29589954 29590024 -172738323 + L2 LINE L2 3186 3257 -56 706 203 141 52 chr4 29590365 29590557 -172737790 - MIR SINE MIR -3 259 51 817 308 43 69 chr4 29590695 29591156 -172737191 - LTR67 LTR ERVL 0 557 109 938 248 82 88 chr4 29591757 29592333 -172736014 + Charlie8 DNA MER1_type 87 658 -1759 2024 196 27 46 chr4 29592556 29593030 -172735317 + MLT1C LTR MaLR 3 467 0 21 36 0 0 chr4 29593875 29593903 -172734444 + AT_rich Low_complexity Low_complexity 1 28 0 849 251 89 52 chr4 29594610 29595163 -172733184 - L1ME3 LINE L1 -332 5830 5258 1508 188 4 11 chr4 29595174 29595440 -172732907 - AluJo SINE Alu -48 264 1 1420 300 115 30 chr4 29595503 29596978 -172731369 - L1ME3 LINE L1 -946 5200 3600 3088 147 0 8 chr4 29597043 29597533 -172730814 - L1PA16 LINE L1 -11 6155 5670 2393 153 26 5 chr4 29597533 29598103 -172730244 + L1PA16 LINE L1 5081 5660 -506 393 283 132 46 chr4 29598999 29599053 -172729294 - L1ME3 LINE L1 -2953 3193 3145 685 182 0 38 chr4 29599053 29599185 -172729162 - FLAM_C SINE Alu -2 131 5 393 283 132 46 chr4 29599185 29599434 -172728913 - L1ME3 LINE L1 -3001 3145 2864 556 256 8 0 chr4 29599503 29599632 -172728715 + MIR SINE MIR 123 252 -10 1876 123 25 7 chr4 29599646 29599923 -172728424 - AluSx SINE Alu -30 282 1 24 67 0 0 chr4 29600534 29600579 -172727768 + AT_rich Low_complexity Low_complexity 1 45 0 500 332 10 48 chr4 29600604 29600812 -172727535 - MIR SINE MIR -55 207 8 263 293 112 17 chr4 29601063 29601179 -172727168 - MIR SINE MIR -129 133 7 301 348 70 37 chr4 29601340 29601527 -172726820 - MIR SINE MIR -51 211 19 1303 271 68 58 chr4 29602080 29602597 -172725750 - MLT1F LTR MaLR -2 540 19 426 281 77 32 chr4 29602606 29602891 -172725456 + L1MEd LINE L1 560 857 -5262 891 294 86 10 chr4 29602914 29603299 -172725048 + HAL1 LINE L1 101 514 -1993 8928 167 6 29 chr4 29603318 29604101 -172724246 + L1P5 LINE L1 3469 4268 -1883 2306 119 0 0 chr4 29604101 29604413 -172723934 + AluSx SINE Alu 1 312 0 8928 167 6 29 chr4 29604413 29606009 -172722338 + L1P5 LINE L1 4268 5790 -361 304 239 11 65 chr4 29606010 29606102 -172722245 - L1MC4 LINE L1 -1344 6698 6612 326 204 27 20 chr4 29606102 29606249 -172722098 + (TA)n Simple_repeat Simple_repeat 1 148 0 2626 105 0 0 chr4 29606303 29606673 -172721674 + L1PB1 LINE L1 5782 6151 0 1731 234 168 67 chr4 29606777 29607359 -172720988 - MLT1E2 LTR MaLR -3 623 11 289 284 59 0 chr4 29607737 29607839 -172720508 - MLT1J2 LTR MaLR -289 161 54 1475 267 44 47 chr4 29608350 29608942 -172719405 + MLT1G LTR MaLR 1 590 0 309 200 111 11 chr4 29608945 29609035 -172719312 + MLT1G-int LTR MaLR 4 102 -1269 276 335 45 25 chr4 29609072 29609314 -172719033 + MLT1G-int LTR MaLR 290 536 -835 256 352 0 0 chr4 29609741 29609829 -172718518 + MLT1G-int LTR MaLR 790 877 -494 2162 99 85 46 chr4 29610153 29610565 -172717782 + MSTA LTR MaLR 1 428 0 279 325 44 9 chr4 29610662 29610776 -172717571 + MLT1G-int LTR MaLR 1253 1370 -1 952 236 101 63 chr4 29610778 29611186 -172717161 + MLT1G LTR MaLR 5 496 -94 2253 158 75 0 chr4 29611186 29611584 -172716763 - MSTC LTR MaLR 0 428 1 952 236 101 63 chr4 29611584 29611683 -172716664 + MLT1G LTR MaLR 496 590 0 1885 175 40 13 chr4 29611892 29612269 -172716078 - MLT1B LTR MaLR -2 388 2 226 179 15 15 chr4 29612326 29612393 -172715954 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 1135 263 87 21 chr4 29614709 29615370 -172712977 + L1ME3 LINE L1 4963 5668 -494 719 220 89 50 chr4 29615350 29615609 -172712738 + L1ME3 LINE L1 5886 6154 -8 * 2028 233 70 11 chr4 29615625 29616152 -172712195 + MER74A LTR ERVL 1 558 0 237 132 0 0 chr4 29616536 29616574 -172711773 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 1560 180 3 41 chr4 29616867 29617161 -172711186 + AluJo SINE Alu 3 285 -27 1930 52 0 4 chr4 29617496 29617744 -172710603 - L1PA5 LINE L1 -2 6152 5906 850 221 47 148 chr4 29617749 29618257 -172710090 - MER110 LTR ERV1 -11 457 1 2378 133 5 19 chr4 29619021 29619390 -172708957 + THE1B LTR MaLR 1 364 0 11090 96 1 66 chr4 29619390 29619760 -172708587 + THE1B-int LTR MaLR 1 393 -1187 653 105 11 0 chr4 29619760 29619926 -172708421 - AluY SINE Alu 0 354 188 11090 96 1 66 chr4 29619926 29621148 -172707199 + THE1B-int LTR MaLR 393 1579 -1 2228 122 28 19 chr4 29621149 29621510 -172706837 + THE1B LTR MaLR 1 364 0 343 204 71 18 chr4 29621553 29621666 -172706681 + L1ME3 LINE L1 6037 6155 -7 978 276 94 10 chr4 29621666 29621963 -172706384 + MER74B LTR ERVL 48 369 -253 23 68 0 0 chr4 29622906 29622950 -172705397 + AT_rich Low_complexity Low_complexity 1 44 0 745 276 11 0 chr4 29623040 29623225 -172705122 - MER58A DNA MER1_type -37 187 1 1591 170 16 52 chr4 29623958 29624264 -172704083 - AluJb SINE Alu -17 295 1 5043 62 3 0 chr4 29624516 29625161 -172703186 - L1PA8 LINE L1 -9 6163 5517 21 57 0 0 chr4 29625217 29625252 -172703095 + AT_rich Low_complexity Low_complexity 1 35 0 256 311 19 75 chr4 29625262 29625392 -172702955 + MER5B DNA MER1_type 54 188 -1 462 331 63 44 chr4 29626297 29626662 -172701685 - L1MCa LINE L1 -4639 1787 1416 1179 241 134 18 chr4 29626712 29627256 -172701091 - L1M4 LINE L1 -1754 4392 3786 768 357 45 34 chr4 29627320 29627959 -172700388 - L1MCa LINE L1 -5631 976 331 23 0 0 0 chr4 29628153 29628176 -172700171 + AT_rich Low_complexity Low_complexity 1 23 0 360 375 58 8 chr4 29630161 29630401 -172697946 - L1M4 LINE L1 -1876 4270 4019 22 0 0 0 chr4 29630421 29630443 -172697904 + AT_rich Low_complexity Low_complexity 1 22 0 464 324 92 57 chr4 29630608 29631417 -172696930 - L1M4 LINE L1 -2375 3771 2935 1770 171 61 6 chr4 29631678 29632022 -172696325 - MLT1A1 LTR MaLR 0 365 3 32 0 0 0 chr4 29632261 29632293 -172696054 + AT_rich Low_complexity Low_complexity 1 32 0 593 313 86 19 chr4 29633346 29634053 -172694294 + L1MEc LINE L1 1921 2643 -3572 884 294 140 8 chr4 29634063 29634819 -172693528 + L1MEc LINE L1 3819 4674 -1541 2396 164 42 4 chr4 29635066 29635548 -172692799 + L1MB3 LINE L1 5682 6181 -2 186 71 0 0 chr4 29635717 29635745 -172692602 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 951 346 46 40 chr4 29635861 29636532 -172691815 - L2 LINE L2 -2351 963 289 7331 30 8 0 chr4 29636593 29637476 -172690871 - L1PA3 LINE L1 0 6155 5260 2589 205 34 33 chr4 29637728 29638373 -172689974 + L1MA10 LINE L1 5670 6315 -19 2206 65 0 14 chr4 29638640 29638917 -172689430 - AluY SINE Alu -8 303 31 286 315 56 37 chr4 29639426 29639588 -172688759 - MIR SINE MIR -45 217 53 420 335 49 65 chr4 29640281 29640526 -172687821 - MIR SINE MIR -10 252 12 248 61 0 0 chr4 29640710 29640743 -172687604 - MLT2F LTR ERVL 0 663 631 180 152 0 0 chr4 29640789 29640822 -172687525 + (TG)n Simple_repeat Simple_repeat 2 34 0 1207 217 53 45 chr4 29640831 29641168 -172687179 - MLT2C1 LTR ERVL -57 340 1 185 449 9 0 chr4 29641197 29641304 -172687043 - L2 LINE L2 -212 3060 2953 185 303 0 53 chr4 29641328 29641404 -172686943 + L2 LINE L2 3147 3218 -54 197 340 123 9 chr4 29641758 29641864 -172686483 - MIR SINE MIR -28 234 117 200 351 0 43 chr4 29642045 29642139 -172686208 + MIR SINE MIR 34 123 -85 1538 186 25 6 chr4 29642193 29642547 -172685800 - L1 LINE L1 -1579 4567 4207 4944 177 8 9 chr4 29642548 29643467 -172684880 + L1MA4 LINE L1 5373 6290 -10 468 226 161 26 chr4 29643549 29643704 -172684643 - MIR SINE MIR -6 256 81 304 258 125 16 chr4 29644530 29644714 -172683633 + L1ME LINE L1 5564 5762 -359 444 292 55 58 chr4 29644719 29645082 -172683265 + L1ME LINE L1 2469 2830 -3316 393 328 75 15 chr4 29645096 29645400 -172682947 + L1ME LINE L1 5241 5559 -562 260 252 149 19 chr4 29645471 29645578 -172682769 + L1ME LINE L1 5678 5798 -323 1915 153 33 81 chr4 29645746 29645991 -172682356 + MLT2A2 LTR ERVL 3 258 -296 2295 99 0 22 chr4 29645991 29646303 -172682044 - AluSx SINE Alu -7 305 1 1915 153 33 81 chr4 29646303 29646625 -172681722 + MLT2A2 LTR ERVL 258 554 0 209 105 35 35 chr4 29646795 29646852 -172681495 + CT-rich Low_complexity Low_complexity 4 60 0 1652 107 9 0 chr4 29647114 29647356 -172680991 + AluSc SINE Alu 63 306 0 23 0 0 0 chr4 29647421 29647444 -172680903 + AT_rich Low_complexity Low_complexity 1 23 0 747 203 40 70 chr4 29647489 29647716 -172680631 - L1MA9 LINE L1 0 6312 6093 423 0 0 0 chr4 29648825 29648872 -172679475 + (TG)n Simple_repeat Simple_repeat 2 48 0 349 316 203 0 chr4 29649752 29649885 -172678462 + MIR3 SINE MIR 38 197 -11 746 197 0 0 chr4 29649954 29650086 -172678261 - FLAM_C SINE Alu 0 133 2 821 208 25 0 chr4 29650565 29650724 -172677623 + FAM SINE Alu 1 163 -12 264 149 0 0 chr4 29651664 29651711 -172676636 + (TG)n Simple_repeat Simple_repeat 2 48 0 231 213 9 37 chr4 29652933 29653041 -172675306 + (TATAA)n Simple_repeat Simple_repeat 3 107 0 328 299 51 0 chr4 29653049 29653166 -172675181 - MIR SINE MIR -32 230 108 441 274 86 46 chr4 29653408 29653605 -172674742 - MIR SINE MIR -14 248 44 * 458 301 152 15 chr4 29653592 29653981 -172674366 + L2 LINE L2 1415 1856 -1458 331 224 20 20 chr4 29654205 29654303 -172674044 + CT-rich Low_complexity Low_complexity 3 100 0 494 333 75 17 chr4 29654542 29654902 -172673445 - L1ME LINE L1 -2984 3096 2716 394 322 70 23 chr4 29655716 29655930 -172672417 + MIR SINE MIR 21 244 -18 1739 128 0 0 chr4 29656224 29656490 -172671857 - L1PB1 LINE L1 -7 6144 5879 248 375 121 12 chr4 29656808 29657056 -172671291 + L2 LINE L2 2804 3078 -194 604 241 64 42 chr4 29657158 29657469 -172670878 - L1ME LINE L1 -5176 894 577 457 241 68 119 chr4 29657579 29657815 -172670532 - L1ME LINE L1 -5513 557 334 237 139 0 0 chr4 29657815 29657858 -172670489 + (T)n Simple_repeat Simple_repeat 1 43 0 4112 39 0 0 chr4 29657861 29658352 -172669995 - L1PA3 LINE L1 -3 6152 5662 839 281 35 26 chr4 29658354 29658695 -172669652 - L1ME LINE L1 -5723 347 4 412 300 108 58 chr4 29658829 29659052 -172669295 - MIR SINE MIR 0 262 29 410 39 0 0 chr4 29659410 29659462 -172668885 + MADE1 DNA Mariner 1 52 -28 902 281 90 59 chr4 29661364 29662112 -172666235 - L1MEc LINE L1 -4309 2087 1317 1272 88 56 70 chr4 29662125 29662340 -172666007 - AluY SINE Alu 0 311 100 359 351 45 0 chr4 29662341 29662475 -172665872 + MIR3 SINE MIR 50 189 -19 257 271 62 70 chr4 29662757 29662886 -172665461 - MIR SINE MIR -12 250 123 949 257 159 34 chr4 29663075 29663546 -172664801 - MLT1H LTR MaLR 0 549 20 653 200 0 0 chr4 29663776 29663891 -172664456 + AluJb SINE Alu 186 300 -12 1202 186 15 47 chr4 29664242 29664516 -172663831 + AluJo SINE Alu 39 303 -9 2310 143 17 23 chr4 29664660 29665103 -172663244 - L1MA5 LINE L1 -27 6273 5831 226 261 0 0 chr4 29665364 29665433 -172662914 - MLT1H-int LTR MaLR -904 467 399 335 253 0 11 chr4 29665553 29665640 -172662707 - MLT1H-int LTR MaLR -1277 94 9 678 182 18 0 chr4 29665648 29665790 -172662557 - MLT1H LTR MaLR 0 549 431 358 280 63 21 chr4 29665900 29666043 -172662304 - MLT1H LTR MaLR -387 162 14 1499 295 47 31 chr4 29666714 29667310 -172661037 - MLT1G LTR MaLR -17 573 1 255 194 194 0 chr4 29668936 29669003 -172659344 + MIR SINE MIR 74 153 -109 369 0 0 0 chr4 29669375 29669416 -172658931 + (CA)n Simple_repeat Simple_repeat 2 42 0 2104 98 0 70 chr4 29669665 29669993 -172658354 + AluSc SINE Alu 1 305 -4 302 295 66 16 chr4 29670042 29670225 -172658122 - L2 LINE L2 -1437 1877 1686 744 350 99 4 chr4 29670243 29670706 -172657641 - L2 LINE L2 -1761 1553 1047 603 281 60 36 chr4 29670724 29670973 -172657374 + L2 LINE L2 2177 2431 -883 203 59 0 29 chr4 29670981 29671015 -172657332 + (TCC)n Simple_repeat Simple_repeat 2 34 0 1537 149 0 109 chr4 29671015 29671337 -172657010 - AluJb SINE Alu -21 291 5 24 32 0 0 chr4 29671453 29671484 -172656863 + AT_rich Low_complexity Low_complexity 1 31 0 424 235 0 0 chr4 29671695 29671776 -172656571 - MER21B LTR ERV1 -498 365 285 258 32 0 0 chr4 29671844 29671875 -172656472 + (TG)n Simple_repeat Simple_repeat 2 32 0 1488 135 0 44 chr4 29671876 29672128 -172656219 + MER21A LTR ERV1 24 264 -667 2921 169 37 46 chr4 29672133 29672694 -172655653 + MER21A LTR ERV1 376 931 0 26 64 0 0 chr4 29672788 29672835 -172655512 + AT_rich Low_complexity Low_complexity 1 47 0 218 85 21 43 chr4 29673041 29673088 -172655259 + (TA)n Simple_repeat Simple_repeat 2 47 0 217 292 35 88 chr4 29673105 29673276 -172655071 + L2 LINE L2 3152 3313 0 580 285 142 11 chr4 29673305 29673565 -172654782 - L2 LINE L2 -2301 1013 720 803 280 111 47 chr4 29673820 29674245 -172654102 - MLT1J LTR MaLR -35 476 25 2260 315 68 62 chr4 29674420 29675123 -172653224 + HERV16 LTR ERVL 1601 2317 -2679 428 0 19 0 chr4 29675123 29675175 -172653172 + (CA)n Simple_repeat Simple_repeat 2 54 0 2260 315 68 62 chr4 29675175 29675814 -172652533 + HERV16 LTR ERVL 2317 2951 -2045 232 296 111 0 chr4 29675817 29675925 -172652422 + L3 LINE CR1 298 417 -1160 326 318 23 16 chr4 29675927 29676056 -172652291 + HERV16 LTR ERVL 3099 3228 -2536 2185 338 82 34 chr4 29676128 29678001 -172650346 + HERV16 LTR ERVL 3382 5344 -420 1357 285 22 53 chr4 29678012 29678274 -172650073 - L1ME3A LINE L1 -77 6093 5825 1263 51 0 0 chr4 29678274 29678432 -172649915 - L1PA4 LINE L1 -3 6152 5995 1357 285 22 53 chr4 29678432 29678791 -172649556 - L1ME3A LINE L1 -345 5825 5491 2273 198 19 0 chr4 29678821 29679236 -172649111 + L1MC4a LINE L1 146 568 -5972 2508 90 0 0 chr4 29679429 29679741 -172648606 - AluSx SINE Alu 0 312 1 23 0 0 0 chr4 29680115 29680138 -172648209 + AT_rich Low_complexity Low_complexity 1 23 0 1594 167 91 23 chr4 29682045 29682387 -172645960 + MLT1A1 LTR MaLR 1 365 0 21 57 0 0 chr4 29683363 29683398 -172644949 + AT_rich Low_complexity Low_complexity 1 35 0 1679 174 0 43 chr4 29684224 29684529 -172643818 + AluJo SINE Alu 3 294 -18 2014 112 0 3 chr4 29684753 29685038 -172643309 - AluSx SINE Alu -2 310 27 1549 196 3 28 chr4 29685038 29685353 -172642994 - AluJo SINE Alu -3 309 1 24 32 0 0 chr4 29685415 29685446 -172642901 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr4 29685519 29685552 -172642795 + AT_rich Low_complexity Low_complexity 1 33 0 2076 270 114 52 chr4 29685634 29686788 -172641559 + L1MC4a LINE L1 1254 2336 -4204 2196 164 68 40 chr4 29686788 29687030 -172641317 + LTR64 LTR ERVK 1 235 -278 2134 123 3 0 chr4 29687030 29687332 -172641015 - AluSx SINE Alu -9 303 1 2196 164 68 40 chr4 29687332 29687588 -172640759 + LTR64 LTR ERVK 235 513 0 2076 270 114 52 chr4 29687588 29688742 -172639605 + L1MC4a LINE L1 2336 3728 -2812 724 238 38 11 chr4 29688745 29688930 -172639417 + L1M2a LINE L1 83 272 -6896 * 2688 288 55 11 chr4 29688927 29689742 -172638605 + L1M2a LINE L1 986 1836 -5332 231 58 19 58 chr4 29689795 29689847 -172638500 + (TTTTTA)n Simple_repeat Simple_repeat 4 53 0 315 315 44 49 chr4 29690690 29691077 -172637270 + L1MC4a LINE L1 5101 5485 -1055 1140 240 100 69 chr4 29691251 29691900 -172636447 + L1MC4a LINE L1 5648 6316 -1886 277 285 90 40 chr4 29692731 29692931 -172635416 + L2 LINE L2 3104 3313 0 304 132 44 0 chr4 29693139 29693207 -172635140 + GA-rich Low_complexity Low_complexity 2 72 0 888 219 0 21 chr4 29693354 29693541 -172634806 - MLT1E3 LTR MaLR -387 237 55 1379 164 15 15 chr4 29694827 29695101 -172633246 - HSMAR2 DNA Mariner 0 1302 1029 22528 153 6 12 chr4 29695132 29699146 -172629201 + L1P3 LINE L1 1094 5090 -1371 4005 75 59 41 chr4 29699133 29699410 -172628937 + L1PA8A LINE L1 5487 5758 -373 * 2164 105 3 16 chr4 29699410 29699716 -172628631 + AluSp SINE Alu 5 306 -7 4005 75 59 41 chr4 29699716 29700052 -172628295 + L1PA8A LINE L1 5758 6111 -20 222 37 0 0 chr4 29700363 29700390 -172627957 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 631 149 11 0 chr4 29700390 29700484 -172627863 - FLAM_A SINE Alu -31 111 17 2742 130 18 7 chr4 29700489 29700934 -172627413 - HSMAR2 DNA Mariner -851 451 2 29 0 0 0 chr4 29702313 29702342 -172626005 + AT_rich Low_complexity Low_complexity 1 29 0 283 211 40 34 chr4 29702395 29702570 -172625777 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 455 217 70 0 chr4 29702912 29703027 -172625320 + MER3 DNA MER1_type 48 123 -86 595 185 80 0 chr4 29703039 29703201 -172625146 + MER3 DNA MER1_type 2449 2623 0 181 341 123 24 chr4 29703539 29703709 -172624638 - MIR SINE MIR -55 207 21 342 105 8 20 chr4 29704866 29704935 -172623412 + AluSp/q SINE Alu 249 303 0 315 315 44 49 chr4 29705210 29705597 -172622750 - L1M4 LINE L1 -1055 6112 5728 231 58 19 58 chr4 29706440 29706492 -172621855 + (TAAAAA)n Simple_repeat Simple_repeat 4 53 0 2688 288 55 11 chr4 29706545 29707360 -172620987 - L1M4 LINE L1 -5332 1836 986 724 238 38 11 chr4 29707357 29707542 -172620805 - L1M4 LINE L1 -6896 272 83 * 2076 271 113 49 chr4 29707545 29708699 -172619648 - L1MDa LINE L1 -2812 3728 2649 2196 164 68 40 chr4 29708699 29708955 -172619392 - LTR64 LTR ERVK 0 513 266 2134 123 3 0 chr4 29708955 29709257 -172619090 + AluSx SINE Alu 1 303 -9 2196 164 68 40 chr4 29709257 29709499 -172618848 - LTR64 LTR ERVK -247 266 1 2076 271 113 49 chr4 29709499 29710653 -172617694 - L1MDa LINE L1 -3891 2649 1254 26 30 0 0 chr4 29710735 29710768 -172617579 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr4 29710841 29710872 -172617475 + AT_rich Low_complexity Low_complexity 1 31 0 1549 196 3 28 chr4 29710934 29711251 -172617096 + AluJo SINE Alu 1 309 -3 1858 127 0 4 chr4 29711251 29711532 -172616815 + AluSq SINE Alu 27 308 0 248 343 103 23 chr4 29711804 29712104 -172616243 - L1MDa LINE L1 -6017 704 381 329 85 0 0 chr4 29712197 29712244 -172616103 - MADE1 DNA Mariner 0 80 34 937 270 123 22 chr4 29712265 29712769 -172615578 + L1ME4a LINE L1 5556 6110 -11 253 253 101 0 chr4 29712887 29712966 -172615381 - L1MC4 LINE L1 -1339 6703 6617 1939 121 3 34 chr4 29712972 29713294 -172615053 - AluSx SINE Alu 0 312 1 4266 172 47 2 chr4 29713303 29714116 -172614231 - L1MB1 LINE L1 0 6168 5320 224 303 92 13 chr4 29715096 29715172 -172613175 - MIR SINE MIR -165 97 16 2388 75 0 0 chr4 29715180 29715475 -172612872 - AluSc SINE Alu -12 297 3 1801 126 0 7 chr4 29715536 29715807 -172612540 + AluY SINE Alu 11 279 -32 324 0 0 0 chr4 29715807 29715843 -172612504 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1211 128 0 0 chr4 29715843 29716023 -172612324 + AluSg/x SINE Alu 129 308 -2 1649 177 0 46 chr4 29716251 29716556 -172611791 - AluJo SINE Alu -19 293 3 21 57 0 0 chr4 29717381 29717416 -172610931 + AT_rich Low_complexity Low_complexity 1 35 0 1594 167 91 23 chr4 29718392 29718734 -172609613 - MLT1A1 LTR MaLR 0 365 1 1955 161 0 0 chr4 29719164 29719477 -172608870 + AluSc SINE Alu 1 309 0 516 314 76 30 chr4 29720438 29720619 -172607728 - L2 LINE L2 -8 3305 3134 2228 114 0 16 chr4 29720619 29720936 -172607411 + AluSx SINE Alu 1 312 0 516 314 76 30 chr4 29720936 29720950 -172607397 - L2 LINE L2 -179 3134 3122 2005 172 42 51 chr4 29720950 29721421 -172606926 - MLT1C LTR MaLR 0 467 1 516 314 76 30 chr4 29721421 29721812 -172606535 - L2 LINE L2 -191 3122 2683 23 0 0 0 chr4 29722754 29722777 -172605570 + AT_rich Low_complexity Low_complexity 1 23 0 442 271 0 0 chr4 29723205 29723301 -172605046 - MER81 DNA DNA -1 113 18 7245 42 10 0 chr4 29723723 29725329 -172603018 + L1PA4 LINE L1 4537 6153 -2 277 291 97 36 chr4 29725342 29725538 -172602809 + MIR SINE MIR 53 260 -2 410 286 77 6 chr4 29726928 29727096 -172601251 + MIR SINE MIR 21 200 -62 2177 98 14 0 chr4 29728529 29728824 -172599523 + AluSp SINE Alu 1 299 -14 21 36 0 0 chr4 29731979 29732007 -172596340 + AT_rich Low_complexity Low_complexity 1 28 0 2580 45 0 10 chr4 29732618 29732932 -172595415 + AluY SINE Alu 1 311 0 293 201 26 122 chr4 29733354 29733543 -172594804 - MER112 DNA MER1_type -89 171 1 262 274 39 10 chr4 29734027 29734129 -172594218 + MIR3 SINE MIR 99 203 -5 181 422 0 11 chr4 29734476 29734566 -172593781 - MIR SINE MIR -170 92 4 229 65 0 43 chr4 29736774 29736820 -172591527 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 197 222 16 0 chr4 29737281 29737344 -172591003 + GA-rich Low_complexity Low_complexity 2 65 0 2015 70 0 0 chr4 29737635 29737878 -172590469 + AluY SINE Alu 55 297 -14 238 244 104 50 chr4 29737891 29738230 -172590117 + L1MEd LINE L1 993 1387 -4910 363 220 28 28 chr4 29738392 29738501 -172589846 - LTR16A1 LTR ERVL -2 455 347 425 281 107 15 chr4 29738571 29738841 -172589506 + L1M4 LINE L1 5002 5296 -850 1948 134 0 7 chr4 29739084 29739404 -172588943 + AluSx SINE Alu 9 326 0 234 259 44 114 chr4 29739452 29739610 -172588737 - L2 LINE L2 -3 3269 3123 196 327 111 37 chr4 29739771 29739933 -172588414 - L2 LINE L2 -410 2904 2731 524 332 40 9 chr4 29740444 29740667 -172587680 - HERV16 LTR ERVL -1715 3939 3710 798 250 109 4 chr4 29740860 29741108 -172587239 + MLT2C1 LTR ERVL 1 274 -123 1718 342 69 19 chr4 29741325 29742939 -172585408 - HERV16 LTR ERVL -2423 3341 1592 504 246 154 11 chr4 29742980 29743155 -172585192 - HERV16 LTR ERVL -4479 517 318 323 294 182 16 chr4 29743397 29743584 -172584763 - LTR16A LTR ERVL 0 450 233 2038 109 36 3 chr4 29743987 29744290 -172584057 + AluSq SINE Alu 1 313 0 536 279 67 31 chr4 29747083 29747526 -172580821 + MER109 Unknown Unknown 40 1450 -982 469 308 10 36 chr4 29747509 29747704 -172580643 + LTR33 LTR ERVL 332 521 0 * 200 394 0 0 chr4 29747762 29747833 -172580514 + L2 LINE L2 3151 3221 -51 1137 122 70 9 chr4 29747854 29748067 -172580280 + L1MA4 LINE L1 6069 6294 -6 2282 154 3 8 chr4 29748100 29748482 -172579865 - L1PB3 LINE L1 -1 6153 5774 1752 204 40 67 chr4 29748656 29749131 -172579216 + MLT1C LTR MaLR 6 467 0 871 342 82 31 chr4 29749135 29750078 -172578269 - L2 LINE L2 -1 3312 2327 2240 142 20 97 chr4 29750078 29750571 -172577776 - LTR32 LTR ERVL 0 471 17 184 292 31 15 chr4 29750572 29750637 -172577710 - L2 LINE L2 -984 2330 2265 1555 329 75 33 chr4 29750641 29751467 -172576880 - L2 LINE L2 -1537 1777 917 1165 234 24 63 chr4 29751555 29751935 -172576412 - MLT1A1 LTR MaLR 0 365 1 2300 282 93 53 chr4 29752935 29756531 -172571816 + L1MCc LINE L1 19 3828 -3113 453 249 94 11 chr4 29756570 29756751 -172571596 + L1MCc LINE L1 4368 4563 -2378 30 45 0 0 chr4 29756761 29756805 -172571542 + AT_rich Low_complexity Low_complexity 1 44 0 308 286 77 39 chr4 29756817 29756999 -172571348 + L1MCc LINE L1 4553 4741 -2200 1079 223 58 42 chr4 29757752 29758111 -172570236 - MLT1A1 LTR MaLR 0 365 1 859 186 126 5 chr4 29758117 29758316 -172570031 - MLT1A1-int LTR MaLR -7 1728 1506 446 32 143 0 chr4 29758323 29758386 -172569961 + MADE1 DNA Mariner 9 80 0 1987 227 155 44 chr4 29758548 29759455 -172568892 - MLT1A1-int LTR MaLR -229 1506 453 930 251 27 5 chr4 29759458 29759677 -172568670 - MLT1A1-int LTR MaLR -1510 225 2 1091 210 23 101 chr4 29759680 29760076 -172568271 - MLT1A1 LTR MaLR 0 365 1 738 234 37 97 chr4 29762538 29762888 -172565459 - MER68 LTR ERV1 -77 485 157 602 302 48 57 chr4 29763062 29763605 -172564742 - HAL1 LINE L1 -857 1650 1113 1307 300 134 29 chr4 29763609 29764127 -172564220 - L2 LINE L2 -43 3270 2808 1909 113 10 0 chr4 29764127 29764418 -172563929 - L1PA14 LINE L1 -4 6157 5864 1307 300 134 29 chr4 29764418 29764795 -172563552 - L2 LINE L2 -505 2808 2273 351 235 93 25 chr4 29764838 29765000 -172563347 - L1M4 LINE L1 -822 5324 5152 26 64 0 0 chr4 29765771 29765818 -172562529 + AT_rich Low_complexity Low_complexity 1 47 0 342 319 92 25 chr4 29766060 29766298 -172562049 - L1M4 LINE L1 -2742 3404 3151 27 29 0 0 chr4 29766636 29766670 -172561677 + AT_rich Low_complexity Low_complexity 1 34 0 1656 170 3 35 chr4 29767226 29767684 -172560663 - AluSx SINE Alu 0 452 4 402 245 53 32 chr4 29768053 29768263 -172560084 - L1MEd LINE L1 -4862 1257 1130 2107 96 3 25 chr4 29768997 29769311 -172559036 - AluSc SINE Alu 0 309 3 361 355 35 0 chr4 29769402 29769543 -172558804 + LTR33 LTR ERVL 51 196 -325 270 227 0 30 chr4 29769777 29769843 -172558504 + LTR33 LTR ERVL 458 521 0 27 0 0 0 chr4 29769912 29769939 -172558408 + AT_rich Low_complexity Low_complexity 1 27 0 513 289 72 119 chr4 29770083 29770636 -172557711 - L1MEd LINE L1 -5581 538 12 230 98 24 0 chr4 29771854 29771895 -172556452 + L1MC4a LINE L1 6133 6174 -1634 1597 189 7 26 chr4 29771918 29772224 -172556123 + AluJo SINE Alu 3 302 -10 829 296 80 21 chr4 29772655 29773168 -172555179 + L1MC4a LINE L1 1377 1919 -4621 1722 84 8 4 chr4 29773241 29773491 -172554856 + L1P LINE L1 4976 5226 -920 3313 38 9 7 chr4 29773504 29773925 -172554422 + L1PA8 LINE L1 5746 6167 -5 565 290 194 14 chr4 29773927 29774292 -172554055 + L1MC4a LINE L1 1963 2393 -4328 2179 288 69 18 chr4 29774384 29775636 -172552711 + L1MC4a LINE L1 3352 4667 -1873 237 219 61 35 chr4 29775653 29775767 -172552580 + L1MC4a LINE L1 4721 4837 -1703 353 263 40 41 chr4 29776323 29776605 -172551742 + L1MC4a LINE L1 6022 6194 -362 2096 177 30 13 chr4 29776611 29777007 -172551340 + MER57A LTR ERV1 1 403 0 807 216 44 20 chr4 29778943 29779147 -172549200 + MER3 DNA MER1_type 1 209 0 838 264 17 25 chr4 29779336 29779571 -172548776 - MIR SINE MIR 0 262 30 2158 102 0 0 chr4 29780315 29780599 -172547748 - AluSg SINE Alu -26 284 1 601 288 17 23 chr4 29781040 29781217 -172547130 + MLT1K LTR MaLR 290 465 -123 1706 101 0 0 chr4 29781445 29781663 -172546684 - AluSc SINE Alu -91 218 1 227 323 20 10 chr4 29782588 29782687 -172545660 - MIR SINE MIR 0 262 163 276 264 128 94 chr4 29782996 29783261 -172545086 - MLT1I LTR MaLR -8 401 128 372 304 174 13 chr4 29783349 29783579 -172544768 - MLT1J1 LTR MaLR -174 272 6 610 318 75 46 chr4 29783700 29784112 -172544235 + L2 LINE L2 2302 2725 -589 666 206 8 0 chr4 29784707 29784833 -172543514 - FLAM_A SINE Alu -6 127 1 2504 45 0 3 chr4 29784962 29785273 -172543074 + AluY SINE Alu 1 310 -1 646 238 67 0 chr4 29785356 29785520 -172542827 + MER105 DNA DNA 30 204 0 299 309 122 0 chr4 29785687 29785826 -172542521 - MIR SINE MIR 0 262 107 688 272 64 68 chr4 29786138 29786553 -172541794 - LTR35 LTR ERV1 -55 501 86 22 0 0 0 chr4 29786646 29786668 -172541679 + AT_rich Low_complexity Low_complexity 1 22 0 269 237 17 0 chr4 29787057 29787116 -172541231 + LTR40a LTR ERVL 1 60 -459 26 0 0 0 chr4 29787278 29787304 -172541043 + AT_rich Low_complexity Low_complexity 1 26 0 496 273 153 10 chr4 29787336 29787728 -172540619 + L1M4 LINE L1 4115 4562 -1584 574 275 163 0 chr4 29787888 29788128 -172540219 - Charlie2 DNA MER1_type -728 2134 1856 811 316 25 19 chr4 29788130 29788453 -172539894 - Charlie2 DNA MER1_type -2457 325 1 267 303 49 19 chr4 29789632 29789794 -172538553 - L1M4 LINE L1 -2211 3935 3769 399 179 26 0 chr4 29789794 29789872 -172538475 + MADE1 DNA Mariner 1 80 0 783 267 55 71 chr4 29790000 29790255 -172538092 + L1ME1 LINE L1 5907 6157 -27 251 331 105 8 chr4 29790384 29790508 -172537839 + MIR3 SINE MIR 30 165 -43 2138 87 21 3 chr4 29791005 29791294 -172537053 - AluSq SINE Alu -18 295 2 311 308 116 50 chr4 29791658 29791960 -172536387 + L1MEc LINE L1 37 358 -6038 356 192 14 14 chr4 29791960 29792033 -172536314 - MLT1H LTR MaLR -393 156 84 21 0 0 0 chr4 29792106 29792127 -172536220 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr4 29792729 29792767 -172535580 + AT_rich Low_complexity Low_complexity 1 38 0 524 192 156 24 chr4 29793454 29793621 -172534726 - MER53 DNA DNA 0 189 1 247 246 45 55 chr4 29793638 29793748 -172534599 + LTR67 LTR ERVL 415 523 -34 2385 48 6 22 chr4 29794403 29794719 -172533628 - L1PA4 LINE L1 0 6155 5845 256 196 71 0 chr4 29795317 29795373 -172532974 - L2 LINE L2 0 3313 3254 319 273 0 0 chr4 29795379 29795445 -172532902 - MER2 DNA MER2_type -7 338 273 469 354 71 16 chr4 29795639 29795947 -172532400 + HERVL LTR ERVL 2022 2346 -3308 711 253 0 0 chr4 29796594 29796740 -172531607 - MLT1A2 LTR MaLR -228 146 1 22 0 0 0 chr4 29796911 29796933 -172531414 + AT_rich Low_complexity Low_complexity 1 22 0 340 340 87 11 chr4 29797866 29798051 -172530296 + MIR SINE MIR 6 204 -58 1104 233 29 56 chr4 29798939 29799157 -172529190 - MLT1A1 LTR MaLR 0 365 160 1879 124 3 59 chr4 29799157 29799480 -172528867 - AluY SINE Alu -6 305 1 1104 233 29 56 chr4 29799480 29799635 -172528712 - MLT1A1 LTR MaLR -205 160 2 397 323 78 26 chr4 29801004 29801236 -172527111 + L3 LINE CR1 1202 1445 -132 192 77 0 0 chr4 29802480 29802506 -172525841 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 419 318 112 0 chr4 29802566 29802736 -172525611 - MIR SINE MIR -67 195 7 591 214 34 17 chr4 29803025 29803142 -172525205 + FLAM_C SINE Alu 7 125 -18 222 164 0 0 chr4 29803142 29803197 -172525150 + (TA)n Simple_repeat Simple_repeat 2 56 0 1759 191 12 50 chr4 29803914 29804317 -172524030 - MLT1B LTR MaLR -2 388 1 184 355 101 7 chr4 29804575 29804713 -172523634 + L3b LINE CR1 1289 1439 -144 218 370 82 20 chr4 29805425 29805571 -172522776 + MIR SINE MIR 20 174 -88 195 42 0 0 chr4 29805711 29805735 -172522612 + (T)n Simple_repeat Simple_repeat 1 24 0 312 282 0 83 chr4 29805744 29805900 -172522447 - LTR33A LTR ERVL -34 489 347 377 305 70 54 chr4 29806149 29806408 -172521939 - MLT1I LTR MaLR -19 390 128 2087 182 107 8 chr4 29807594 29808062 -172520285 - MER67D LTR ERV1 0 514 1 532 293 52 37 chr4 29808326 29808684 -172519663 - MLT1I LTR MaLR -20 389 57 234 288 0 0 chr4 29811127 29811186 -172517161 + CT-rich Low_complexity Low_complexity 2 60 0 579 320 107 13 chr4 29811467 29811701 -172516646 - MIR SINE MIR -4 258 3 730 196 8 0 chr4 29811823 29811956 -172516391 - FLAM_C SINE Alu -3 140 7 988 101 0 0 chr4 29812231 29812393 -172515954 + AluSc SINE Alu 170 331 0 253 207 52 0 chr4 29812429 29812487 -172515860 + MER58 DNA MER1_type 2359 2419 -1 27 0 0 0 chr4 29813306 29813333 -172515014 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr4 29814596 29814626 -172513721 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr4 29814636 29814659 -172513688 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1800 115 8 0 chr4 29814668 29814929 -172513418 - AluSx SINE Alu -44 268 6 439 243 0 0 chr4 29814932 29815006 -172513341 + MER2 DNA MER2_type 272 345 0 1839 148 7 3 chr4 29815058 29815356 -172512991 - AluJo SINE Alu -2 310 12 264 318 0 12 chr4 29816003 29816088 -172512259 + MIR SINE MIR 174 257 -5 1961 131 0 10 chr4 29816292 29816610 -172511737 - AluSq SINE Alu 0 316 2 412 273 200 0 chr4 29816705 29816855 -172511492 - MER5A DNA MER1_type 0 189 10 517 280 63 35 chr4 29816857 29817000 -172511347 + L2 LINE L2 3126 3272 0 2904 155 8 12 chr4 29817053 29817563 -172510784 - L1PB4 LINE L1 -3 6153 5646 410 109 315 22 chr4 29817670 29817762 -172510585 + LTR14B LTR ERVK 1 119 -489 1813 69 13 98 chr4 29817767 29818085 -172510262 + LTR14A LTR ERVK 54 344 0 28 29 0 0 chr4 29818483 29818518 -172509829 + AT_rich Low_complexity Low_complexity 1 35 0 1656 116 3 104 chr4 29819123 29819451 -172508896 + AluSx SINE Alu 1 295 -17 261 268 12 0 chr4 29820089 29820171 -172508176 + A-rich Low_complexity Low_complexity 1 83 0 1776 149 52 46 chr4 29820632 29821020 -172507327 - MLT1B LTR MaLR 0 390 1 27 29 0 0 chr4 29821686 29821720 -172506627 + AT_rich Low_complexity Low_complexity 1 34 0 350 228 114 72 chr4 29821751 29821988 -172506359 + MER5C DNA MER1_type 1 247 -77 231 167 0 67 chr4 29821998 29822058 -172506289 + A-rich Low_complexity Low_complexity 5 60 0 232 305 25 17 chr4 29822098 29822216 -172506131 + MIR SINE MIR 5 123 -139 605 258 26 70 chr4 29822303 29822532 -172505815 - MER20 DNA MER1_type 0 219 1 228 214 0 0 chr4 29822781 29822837 -172505510 + (TA)n Simple_repeat Simple_repeat 1 56 0 1008 193 100 43 chr4 29823046 29823346 -172505001 + MER33 DNA MER1_type 7 323 -1 33 73 0 0 chr4 29823914 29823982 -172504365 + AT_rich Low_complexity Low_complexity 1 68 0 1063 191 86 65 chr4 29824149 29824485 -172503862 + MER2 DNA MER2_type 2 344 0 23 33 0 0 chr4 29824488 29824518 -172503829 + AT_rich Low_complexity Low_complexity 1 30 0 502 220 23 69 chr4 29824526 29824699 -172503648 + MER105 DNA DNA 22 186 -18 416 322 71 29 chr4 29825514 29825939 -172502408 - L2 LINE L2 -1565 1749 1237 345 276 184 0 chr4 29826093 29826245 -172502102 + MIR SINE MIR 83 262 0 312 48 0 0 chr4 29826617 29826659 -172501688 + (TG)n Simple_repeat Simple_repeat 2 43 0 225 281 125 21 chr4 29826926 29827022 -172501325 - MER102a DNA MER1_type -6 324 219 443 302 117 28 chr4 29827404 29827583 -172500764 - MIR3 SINE MIR -2 206 12 345 265 22 73 chr4 29828770 29828906 -172499441 - L3b LINE CR1 -59 1524 1396 2118 76 0 73 chr4 29830625 29830953 -172497394 - AluY SINE Alu -7 304 1 288 380 25 0 chr4 29831895 29832095 -172496252 + MIR SINE MIR 55 259 -3 3447 199 23 6 chr4 29832478 29833203 -172495144 - L1 LINE L1 -3116 3030 2293 466 326 33 0 chr4 29836194 29836375 -172491972 - MIR SINE MIR -1 261 75 362 273 111 47 chr4 29836813 29836985 -172491362 - MLT1J LTR MaLR 0 511 329 642 271 51 28 chr4 29837058 29837272 -172491075 - MLT1J LTR MaLR -292 219 1 915 332 153 0 chr4 29839024 29839391 -172488956 + L2 LINE L2 2291 2713 -601 715 206 0 8 chr4 29839394 29839560 -172488787 + FLAM_A SINE Alu 1 165 0 611 296 62 11 chr4 29840744 29840920 -172487427 + MIR3 SINE MIR 1 185 -23 203 128 43 0 chr4 29842026 29842073 -172486274 + A-rich Low_complexity Low_complexity 2 50 0 12865 198 23 13 chr4 29842487 29848611 -172479736 - L1PA16 LINE L1 -9 6860 714 180 330 93 10 chr4 29848612 29848709 -172479638 + MIR SINE MIR 45 149 -59 192 125 0 0 chr4 29850937 29850969 -172477378 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 786 93 17 0 chr4 29851064 29851182 -172477165 - L1PA6 LINE L1 -7 6147 6028 192 296 19 0 chr4 29851183 29851237 -172477110 + L2 LINE L2 3172 3226 -87 343 289 0 11 chr4 29851257 29851347 -172477000 + L1MC4 LINE L1 6614 6702 -1340 2206 121 0 9 chr4 29851848 29852163 -172476184 - AluSx SINE Alu 0 312 1 221 299 26 0 chr4 29853635 29853712 -172474635 - L2 LINE L2 -62 3251 3173 3149 42 3 0 chr4 29853829 29854214 -172474133 - L1PA4 LINE L1 -3 6152 5767 604 295 105 0 chr4 29855246 29855436 -172472911 + MIR SINE MIR 31 240 -22 206 371 40 16 chr4 29855561 29855685 -172472662 - MIR3 SINE MIR -76 132 6 304 53 0 0 chr4 29855934 29855972 -172472375 - MLT2B1 LTR ERVL -482 38 1 21 0 0 0 chr4 29856257 29856278 -172472069 + AT_rich Low_complexity Low_complexity 1 21 0 1943 198 97 11 chr4 29856548 29857013 -172471334 + MLT1D LTR MaLR 1 505 0 338 278 47 94 chr4 29857030 29857264 -172471083 - MIR SINE MIR -6 256 34 334 333 42 17 chr4 29857398 29857518 -172470829 - L2 LINE L2 -4 3268 3146 195 364 0 0 chr4 29858393 29858448 -172469899 + MIR SINE MIR 92 146 -62 193 337 152 0 chr4 29859416 29859508 -172468839 + MIR SINE MIR 137 242 -20 1551 231 72 74 chr4 29859593 29859981 -172468366 - MLT2B3 LTR ERVL 0 554 166 2470 70 0 3 chr4 29859981 29860293 -172468054 - AluY SINE Alu 0 311 1 1551 231 72 74 chr4 29860293 29860459 -172467888 - MLT2B3 LTR ERVL -388 166 1 2906 146 10 15 chr4 29860490 29861010 -172467337 - L1MA9 LINE L1 0 6312 5796 384 193 44 53 chr4 29861846 29861880 -172466467 + MER69 DNA AcHobo 2393 2426 -100 1431 223 72 56 chr4 29861880 29862377 -172465970 + MLT1D LTR MaLR 1 505 0 384 193 44 53 chr4 29862377 29862456 -172465891 + MER69 DNA AcHobo 2426 2505 -21 268 253 84 0 chr4 29863767 29863862 -172464485 - MIR SINE MIR -56 206 104 690 241 104 81 chr4 29864306 29864468 -172463879 + L1ME2 LINE L1 5711 5868 -296 1131 228 127 45 chr4 29864468 29864932 -172463415 - MLT1D LTR MaLR -3 502 1 690 241 104 81 chr4 29864932 29865213 -172463134 + L1ME2 LINE L1 5868 6164 0 492 128 0 0 chr4 29866392 29866470 -172461877 + (TCCA)n Simple_repeat Simple_repeat 4 81 0 2171 117 0 0 chr4 29867480 29867778 -172460569 + AluSq SINE Alu 1 298 -15 26 30 0 0 chr4 29867794 29867827 -172460520 + AT_rich Low_complexity Low_complexity 1 33 0 22 80 0 0 chr4 29868344 29868394 -172459953 + AT_rich Low_complexity Low_complexity 1 50 0 253 342 70 77 chr4 29868633 29868946 -172459401 + L2 LINE L2 1725 2035 -1279 901 264 154 48 chr4 29869019 29869055 -172459292 - MLT2B1 LTR ERVL -3 517 486 477 0 0 0 chr4 29869055 29869108 -172459239 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 901 264 154 48 chr4 29869108 29869487 -172458860 - MLT2B1 LTR ERVL -34 486 58 2913 179 11 25 chr4 29869516 29870010 -172458337 + L1MB3 LINE L1 5529 6015 -168 2270 131 46 8 chr4 29870010 29870361 -172457986 + THE1B LTR MaLR 1 364 0 2913 179 11 25 chr4 29870361 29870437 -172457910 + L1MB3 LINE L1 6015 6091 -92 637 183 0 14 chr4 29870460 29870602 -172457745 + L1MB3 LINE L1 6044 6183 0 2327 97 0 0 chr4 29870884 29871182 -172457165 - AluSc SINE Alu -11 298 1 440 319 44 9 chr4 29873613 29873803 -172454544 - MIR SINE MIR -8 254 55 615 251 119 37 chr4 29874290 29874533 -172453814 + MLT1H LTR MaLR 43 305 -244 4671 105 3 0 chr4 29874697 29875352 -172452995 - L1PA11 LINE L1 0 6174 5518 1246 136 30 0 chr4 29875352 29875596 -172452751 + L1P4 LINE L1 5210 5459 -709 328 224 24 0 chr4 29875596 29875681 -172452666 + MLT1H LTR MaLR 463 549 0 1262 39 13 0 chr4 29876259 29876413 -172451934 - L1PA3 LINE L1 -2 6153 5998 3685 82 224 2 chr4 29876753 29877316 -172451031 - LTR12 LTR ERV1 0 688 1 2015 112 20 0 chr4 29877404 29877699 -172450648 - AluSq SINE Alu -12 301 1 219 288 198 0 chr4 29877888 29877999 -172450348 - L2 LINE L2 -1 3312 3180 222 105 0 0 chr4 29878081 29878119 -172450228 + (A)n Simple_repeat Simple_repeat 1 38 0 306 345 55 19 chr4 29878254 29878594 -172449753 + MLT1I LTR MaLR 31 409 0 229 306 271 7 chr4 29881078 29881222 -172447125 + MER5A DNA MER1_type 2 183 -6 2047 103 27 10 chr4 29881532 29881824 -172446523 + AluSx SINE Alu 5 301 -11 331 247 78 32 chr4 29882297 29882451 -172445896 - MER103 DNA DNA 0 166 6 192 77 0 0 chr4 29884882 29884908 -172443439 + (TA)n Simple_repeat Simple_repeat 1 26 0 315 330 0 0 chr4 29885071 29885159 -172443188 - L1MC4 LINE L1 -1341 6701 6614 308 250 36 0 chr4 29885087 29885171 -172443176 + L1MC4 LINE L1 6614 6700 -1342 * 334 276 23 0 chr4 29885171 29885258 -172443089 + L1MC4 LINE L1 6612 6700 -1342 207 204 0 0 chr4 29885260 29885309 -172443038 + (TA)n Simple_repeat Simple_repeat 2 50 0 2268 115 12 9 chr4 29885588 29885918 -172442429 - THE1B LTR MaLR 0 364 34 360 0 0 0 chr4 29886784 29886824 -172441523 + (TA)n Simple_repeat Simple_repeat 1 40 0 240 35 0 0 chr4 29886823 29886852 -172441495 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 29 70 0 0 chr4 29887142 29887199 -172441148 + AT_rich Low_complexity Low_complexity 1 57 0 311 330 18 18 chr4 29887724 29887836 -172440511 + L1ME3A LINE L1 5808 5919 -251 515 264 108 67 chr4 29888163 29888640 -172439707 + HAL1 LINE L1 764 1289 -1218 198 0 0 0 chr4 29888640 29888662 -172439685 + (GA)n Simple_repeat Simple_repeat 2 23 0 515 264 108 67 chr4 29888662 29888990 -172439357 + HAL1 LINE L1 1289 1602 -905 423 308 96 25 chr4 29889352 29889550 -172438797 + LTR16A LTR ERVL 234 445 -5 704 278 172 40 chr4 29889558 29889954 -172438393 + HERV16 LTR ERVL 4 451 -4545 436 253 110 28 chr4 29890035 29890217 -172438130 + HERV16 LTR ERVL 560 756 -4240 252 0 0 0 chr4 29890409 29890437 -172437910 + (T)n Simple_repeat Simple_repeat 1 28 0 252 227 0 148 chr4 29890809 29890897 -172437450 + HERV16 LTR ERVL 1310 1384 -3612 21 57 0 0 chr4 29890918 29890953 -172437394 + AT_rich Low_complexity Low_complexity 1 35 0 407 331 15 0 chr4 29891142 29891275 -172437072 + HERV16 LTR ERVL 1741 1875 -3121 711 319 45 59 chr4 29891279 29891567 -172436780 + MER45C DNA AcHobo 1 284 -669 552 188 140 25 chr4 29891618 29891808 -172436539 + MER45C DNA AcHobo 735 946 -7 1192 312 22 20 chr4 29891819 29892277 -172436070 + HERV16 LTR ERVL 1880 2338 -2658 535 228 16 8 chr4 29892366 29892493 -172435854 - MER65B LTR ERV1 -403 128 1 1702 177 0 14 chr4 29893001 29893295 -172435052 - AluJo SINE Alu -20 292 3 344 293 94 38 chr4 29893300 29893512 -172434835 + HAL1 LINE L1 2169 2392 -115 1296 188 102 64 chr4 29893711 29893858 -172434489 - THE1C LTR MaLR 0 375 235 2239 121 22 25 chr4 29893858 29894223 -172434124 - THE1B LTR MaLR 0 364 1 1296 188 102 64 chr4 29894223 29894436 -172433911 - THE1C LTR MaLR -140 235 1 192 380 98 16 chr4 29894656 29894911 -172433436 + L2 LINE L2 2804 3079 -193 235 279 25 0 chr4 29895047 29895126 -172433221 + (TA)n Simple_repeat Simple_repeat 2 82 0 3391 165 75 5 chr4 29895475 29896459 -172431888 - L1MA9 LINE L1 -182 6130 5039 25 0 0 0 chr4 29897168 29897193 -172431154 + AT_rich Low_complexity Low_complexity 1 25 0 212 179 0 0 chr4 29897429 29897468 -172430879 - MIR SINE MIR -13 249 211 190 340 65 45 chr4 29897882 29898082 -172430265 + MIR SINE MIR 53 256 -6 23 33 0 0 chr4 29898714 29898744 -172429603 + AT_rich Low_complexity Low_complexity 1 30 0 225 284 0 0 chr4 29898961 29899035 -172429312 + (TA)n Simple_repeat Simple_repeat 1 74 0 255 157 0 0 chr4 29899200 29899251 -172429096 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1436 257 83 30 chr4 29899260 29900129 -172428218 - L1ME1 LINE L1 -287 6674 5758 545 253 68 0 chr4 29900132 29900353 -172427994 - L1ME1 LINE L1 -1754 5187 4952 2825 283 47 32 chr4 29900361 29902005 -172426342 - L1ME1 LINE L1 -2154 4787 3120 521 258 76 46 chr4 29902007 29902421 -172425926 + L1MEc LINE L1 2030 2405 -3810 864 264 84 12 chr4 29902438 29902772 -172425575 - L1ME1 LINE L1 -4889 1534 1177 286 351 22 44 chr4 29902850 29903078 -172425269 - L1ME1 LINE L1 -5394 1029 807 957 275 46 17 chr4 29903290 29903639 -172424708 - L1ME1 LINE L1 -5955 468 110 836 341 93 12 chr4 29905631 29906252 -172422095 - L2 LINE L2 0 3313 2548 226 267 41 14 chr4 29906307 29906453 -172421894 + (TTATA)n Simple_repeat Simple_repeat 5 154 0 199 309 170 0 chr4 29906453 29906547 -172421800 + L2 LINE L2 2544 2653 -661 1578 124 57 25 chr4 29906547 29906829 -172421518 + THE1C LTR MaLR 85 375 0 186 364 58 13 chr4 29906986 29907140 -172421207 - MIR SINE MIR -48 214 54 1321 215 48 16 chr4 29907402 29907739 -172420608 + L1MA10 LINE L1 5996 6331 -3 412 259 37 0 chr4 29907739 29907847 -172420500 + L1MB5 LINE L1 6040 6151 -23 2004 194 39 15 chr4 29907850 29908262 -172420085 + MSTB LTR MaLR 1 422 -4 2754 10 0 10 chr4 29909105 29909417 -172418930 - AluYa5 SINE Alu -2 309 1 652 233 12 64 chr4 29909949 29910121 -172418226 + Charlie1a DNA MER1_type 1 163 -1292 412 265 117 25 chr4 29910131 29910327 -172418020 + Charlie1a DNA MER1_type 484 697 -758 1723 250 79 23 chr4 29910328 29910885 -172417462 - MLT1E3 LTR MaLR 0 624 50 462 307 20 13 chr4 29911579 29911729 -172416618 - MIR SINE MIR -103 159 9 213 65 0 0 chr4 29912227 29912258 -172416089 + (TC)n Simple_repeat Simple_repeat 2 32 0 465 319 28 7 chr4 29912301 29912442 -172415905 - MIR3 SINE MIR -42 166 23 476 282 121 36 chr4 29914250 29914498 -172413849 - L3 LINE CR1 -4 1573 1305 23 0 0 0 chr4 29914634 29914657 -172413690 + AT_rich Low_complexity Low_complexity 1 23 0 218 341 68 0 chr4 29915330 29915418 -172412929 - L3 LINE CR1 -439 1138 1045 203 381 65 7 chr4 29915645 29915784 -172412563 - L2 LINE L2 0 3313 3167 2105 172 34 49 chr4 29915960 29916432 -172411915 - L1MC3 LINE L1 -184 7601 7137 581 278 42 69 chr4 29916442 29916748 -172411599 - L1MCb LINE L1 -5710 335 38 1917 193 21 23 chr4 29916762 29917146 -172411201 - MLT1B LTR MaLR -7 383 1 1606 224 37 3 chr4 29917446 29917799 -172410548 - MLT1A1 LTR MaLR 0 365 1 456 234 48 8 chr4 29917849 29917973 -172410374 - MER76 LTR ERV -9 679 551 246 331 92 71 chr4 29918023 29918207 -172410140 - MER5A DNA MER1_type 0 189 2 265 284 128 28 chr4 29918298 29918439 -172409908 + MIR3 SINE MIR 50 204 -4 247 337 22 22 chr4 29919000 29919089 -172409258 + MIR SINE MIR 68 156 -106 1533 266 47 32 chr4 29919766 29920295 -172408052 + MLT1E2 LTR MaLR 115 626 0 370 293 78 12 chr4 29920575 29920742 -172407605 + MIR SINE MIR 70 247 -15 212 332 49 86 chr4 29920930 29921174 -172407173 - L2 LINE L2 -167 3105 2871 2217 120 3 6 chr4 29922380 29922714 -172405633 + L1PB3 LINE L1 5660 5992 -162 2252 90 0 0 chr4 29922799 29923099 -172405248 - AluSc SINE Alu -9 300 1 230 244 82 91 chr4 29923623 29923963 -172404384 - L1ME LINE L1 -3996 2829 2493 401 257 174 61 chr4 29924153 29924464 -172403883 - L1ME LINE L1 -4576 2249 1904 25 51 0 0 chr4 29924464 29924503 -172403844 + AT_rich Low_complexity Low_complexity 1 39 0 2295 180 13 16 chr4 29924529 29924979 -172403368 - L1MC1 LINE L1 -256 6077 5629 303 321 24 13 chr4 29925225 29925458 -172402889 - L1ME LINE L1 -5051 1565 1296 360 330 38 27 chr4 29925804 29925989 -172402358 - MIR3 SINE MIR 0 208 22 306 242 30 30 chr4 29926054 29926153 -172402194 - LTR67 LTR ERVL -31 526 428 2479 56 0 0 chr4 29926553 29926858 -172401489 + AluY SINE Alu 1 305 -6 191 252 68 87 chr4 29926874 29926977 -172401370 + MIR SINE MIR 107 207 -55 212 179 0 0 chr4 29927678 29927717 -172400630 + T-rich Low_complexity Low_complexity 1 39 0 1922 41 0 8 chr4 29927721 29927965 -172400382 + L1PA4 LINE L1 5911 6152 -3 2188 104 3 0 chr4 29928138 29928427 -172399920 + AluSx SINE Alu 1 290 -22 213 65 0 0 chr4 29928430 29928461 -172399886 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2291 117 0 0 chr4 29929189 29929498 -172398849 + AluSg SINE Alu 1 309 -1 392 82 16 0 chr4 29930206 29930267 -172398080 + (TA)n Simple_repeat Simple_repeat 2 63 0 24 0 0 0 chr4 29931086 29931110 -172397237 + AT_rich Low_complexity Low_complexity 1 24 0 264 309 81 37 chr4 29931283 29931419 -172396928 + MIR SINE MIR 60 201 -61 183 42 0 0 chr4 29931692 29931716 -172396631 + (GA)n Simple_repeat Simple_repeat 2 25 0 13548 154 16 37 chr4 29931937 29933370 -172394977 + Tigger1 DNA MER2_type 11 1370 -1048 690 146 0 0 chr4 29933370 29933480 -172394867 + L1MB8 LINE L1 6061 6170 -8 13548 154 16 37 chr4 29933480 29934507 -172393840 + Tigger1 DNA MER2_type 1370 2418 0 232 318 0 0 chr4 29934584 29934650 -172393697 - MIR SINE MIR -153 109 44 23 0 0 0 chr4 29934898 29934921 -172393426 + AT_rich Low_complexity Low_complexity 1 23 0 217 371 8 24 chr4 29935379 29935503 -172392844 - L2 LINE L2 -1007 2307 2186 2339 113 11 11 chr4 29935581 29935944 -172392403 + THE1B LTR MaLR 2 364 0 247 351 26 33 chr4 29936024 29936175 -172392172 + MER5A DNA MER1_type 10 159 -30 23 0 0 0 chr4 29936612 29936635 -172391712 + AT_rich Low_complexity Low_complexity 1 23 0 227 268 28 0 chr4 29936650 29936721 -172391626 + MER103 DNA DNA 94 166 0 333 325 51 6 chr4 29936884 29937041 -172391306 + MIR SINE MIR 97 260 -2 722 221 0 0 chr4 29937143 29937274 -172391073 - FLAM_A SINE Alu -2 131 1 1036 173 66 29 chr4 29937289 29937561 -172390786 - L1MA8 LINE L1 0 6291 6010 1005 338 79 41 chr4 29938091 29938943 -172389404 - L2 LINE L2 -673 2641 1758 347 160 0 85 chr4 29938950 29939044 -172389303 - MER53 DNA DNA -1 188 103 386 324 66 39 chr4 29939092 29939217 -172389130 - L2 LINE L2 -1593 1721 1601 2474 67 0 3 chr4 29939217 29939529 -172388818 - AluY SINE Alu 0 311 1 386 324 66 39 chr4 29939529 29939736 -172388611 - L2 LINE L2 -1713 1601 1380 1842 170 0 0 chr4 29940039 29940333 -172388014 + AluJb SINE Alu 3 296 -16 182 174 22 0 chr4 29940511 29940557 -172387790 + (TA)n Simple_repeat Simple_repeat 2 48 0 312 27 0 0 chr4 29940613 29940650 -172387697 + (TG)n Simple_repeat Simple_repeat 1 37 0 293 339 115 10 chr4 29940847 29941039 -172387308 + MIR SINE MIR 34 245 -17 180 310 69 0 chr4 29941066 29941124 -172387223 - MIR SINE MIR -21 241 180 250 316 110 13 chr4 29941236 29941391 -172386956 - MIR SINE MIR -86 176 7 1978 141 7 0 chr4 29941564 29941869 -172386478 - AluSx SINE Alu -5 307 1 22 0 0 0 chr4 29944749 29944771 -172383576 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 29945685 29945705 -172382642 + (TC)n Simple_repeat Simple_repeat 1 20 0 242 390 8 8 chr4 29945911 29946029 -172382318 - L2 LINE L2 0 3272 3155 606 282 62 37 chr4 29946247 29946722 -172381625 - MLT1G LTR MaLR -2 588 34 323 291 162 12 chr4 29946982 29947223 -172381124 - MLT1J2 LTR MaLR -105 345 69 2328 90 3 0 chr4 29947421 29947721 -172380626 + AluY SINE Alu 1 301 -10 375 141 94 0 chr4 29948023 29948087 -172380260 - L1PB4 LINE L1 -283 5873 5804 189 0 0 0 chr4 29948092 29948113 -172380234 + (TG)n Simple_repeat Simple_repeat 2 22 0 203 294 15 0 chr4 29948142 29948210 -172380137 + (TA)n Simple_repeat Simple_repeat 1 69 0 365 57 0 19 chr4 29948216 29948269 -172380078 + (TG)n Simple_repeat Simple_repeat 2 53 0 335 23 23 0 chr4 29948268 29948312 -172380035 + (TA)n Simple_repeat Simple_repeat 1 45 0 * 2637 134 4 20 chr4 29948331 29948786 -172379561 - L1PB4 LINE L1 -384 5772 5325 548 317 86 52 chr4 29949232 29949617 -172378730 + L3 LINE CR1 1158 1555 -22 283 282 57 32 chr4 29949619 29949743 -172378604 - MIR3 SINE MIR -1 207 81 282 143 0 0 chr4 29950200 29950249 -172378098 - L2 LINE L2 0 3313 3265 287 300 22 94 chr4 29950565 29950635 -172377712 - MIR SINE MIR -1 261 188 2234 102 3 10 chr4 29950635 29950938 -172377409 - AluSx SINE Alu -11 301 1 287 300 22 94 chr4 29950938 29951047 -172377300 - MIR SINE MIR -74 188 95 617 286 95 66 chr4 29951425 29951908 -172376439 + MLT1J LTR MaLR 3 499 -12 21 0 0 0 chr4 29952638 29952659 -172375688 + AT_rich Low_complexity Low_complexity 1 21 0 2304 132 43 3 chr4 29953155 29953527 -172374820 + L1PA15 LINE L1 5779 6165 0 1154 260 56 6 chr4 29953861 29954219 -172374128 + L1ME3A LINE L1 5523 5898 -272 24 0 0 0 chr4 29957601 29957625 -172370722 + AT_rich Low_complexity Low_complexity 1 24 0 2047 105 4 4 chr4 29957813 29958116 -172370231 + AluSc SINE Alu 3 305 0 3952 215 80 22 chr4 29958146 29959000 -172369347 - L1MC3 LINE L1 -8 7777 6814 432 0 0 0 chr4 29959000 29959048 -172369299 + (TG)n Simple_repeat Simple_repeat 2 49 0 3952 215 80 22 chr4 29959048 29959728 -172368619 - L1MC3 LINE L1 -971 6814 6174 1733 135 7 66 chr4 29959816 29960145 -172368202 - AluSq SINE Alu 0 311 1 21 36 0 0 chr4 29960721 29960749 -172367598 + AT_rich Low_complexity Low_complexity 1 28 0 446 336 48 22 chr4 29961902 29962131 -172366216 - MIR SINE MIR 0 262 28 476 273 68 19 chr4 29962179 29962384 -172365963 - LTR67 LTR ERVL -17 540 326 2308 106 0 0 chr4 29963406 29963707 -172364640 - AluSg SINE Alu -9 301 1 3033 316 102 26 chr4 29963862 29965413 -172362934 - L2 LINE L2 -661 2653 986 275 323 37 19 chr4 29966513 29966565 -172361782 + L1MCc LINE L1 39 89 -6334 2287 93 0 7 chr4 29966565 29966865 -172361482 + AluSc SINE Alu 1 298 -11 275 323 37 19 chr4 29966865 29966973 -172361374 + L1MCc LINE L1 89 202 -6221 30 0 0 0 chr4 29967570 29967600 -172360747 + AT_rich Low_complexity Low_complexity 1 30 0 246 196 62 82 chr4 29967619 29967716 -172360631 + L1MCc LINE L1 2429 2523 -4599 556 273 129 43 chr4 29967752 29968008 -172360339 - MLT1E3 LTR MaLR 0 624 347 963 155 0 12 chr4 29968011 29968179 -172360168 + MER61-int LTR ERV1 2615 2780 -2437 192 40 0 0 chr4 29968180 29968205 -172360142 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2034 188 18 5 chr4 29968205 29968589 -172359758 + MER61-int LTR ERV1 2817 3205 -2012 3663 101 38 30 chr4 29968615 29969056 -172359291 + LTR19B LTR ERV1 1 451 -129 2178 65 0 7 chr4 29969056 29969369 -172358978 + AluY SINE Alu 7 317 0 3663 101 38 30 chr4 29969369 29969501 -172358846 + LTR19B LTR ERV1 451 580 0 1107 263 141 30 chr4 29969506 29969875 -172358472 - MLT1E1 LTR MaLR -244 410 1 2722 291 62 24 chr4 29969876 29970166 -172358181 + L1MCc LINE L1 2553 2831 -4110 2413 90 0 6 chr4 29970166 29970478 -172357869 + AluSg SINE Alu 1 310 0 2722 291 62 24 chr4 29970478 29972362 -172355985 + L1MCc LINE L1 2831 4930 -2011 1075 282 113 3 chr4 29972362 29972717 -172355630 - LTR53 LTR ERVL 0 519 126 2526 163 14 0 chr4 29972717 29973185 -172355162 + MER1A DNA MER1_type 1 524 -5 372 163 138 12 chr4 29973187 29973262 -172355085 - LTR53 LTR ERVL -384 135 51 1492 230 38 31 chr4 29973262 29973654 -172354693 + MLT1C LTR MaLR 1 395 -72 1322 278 11 8 chr4 29973654 29974025 -172354322 + L1MD3 LINE L1 7452 7823 -172 24 0 0 0 chr4 29974247 29974271 -172354076 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 29974382 29974403 -172353944 + AT_rich Low_complexity Low_complexity 1 21 0 1224 215 64 13 chr4 29975104 29975416 -172352931 - MER2 DNA MER2_type -9 336 9 1130 254 111 19 chr4 29975783 29976142 -172352205 + MLT1H LTR MaLR 14 405 -144 258 32 0 0 chr4 29976143 29976174 -172352173 + (CAGCC)n Simple_repeat Simple_repeat 3 33 0 279 0 0 0 chr4 29976871 29976902 -172351445 + (A)n Simple_repeat Simple_repeat 1 31 0 433 353 12 0 chr4 29977289 29977459 -172350888 + MIR SINE MIR 81 252 -10 674 286 48 0 chr4 29977624 29977851 -172350496 - LTR16A1 LTR ERVL -7 450 213 363 44 0 0 chr4 29977886 29977931 -172350416 + (CA)n Simple_repeat Simple_repeat 2 46 0 1822 143 93 15 chr4 29979541 29979884 -172348463 - THE1C LTR MaLR 0 375 6 24 0 0 0 chr4 29980376 29980400 -172347947 + AT_rich Low_complexity Low_complexity 1 24 0 731 208 0 8 chr4 29980734 29980864 -172347483 - FLAM_A SINE Alu -4 129 1 545 285 111 49 chr4 29980864 29981366 -172346981 - L1M4 LINE L1 -1486 4660 4124 272 250 25 0 chr4 29981497 29981577 -172346770 - L1M4 LINE L1 -3382 2764 2683 23 0 0 0 chr4 29982172 29982195 -172346152 + AT_rich Low_complexity Low_complexity 1 23 0 652 217 0 0 chr4 29982435 29982555 -172345792 + FLAM_C SINE Alu 1 120 -13 579 29 0 0 chr4 29982555 29982624 -172345723 + (TA)n Simple_repeat Simple_repeat 1 69 0 2196 110 3 0 chr4 29982626 29982918 -172345429 + AluSp SINE Alu 1 293 -20 360 59 0 0 chr4 29982920 29982971 -172345376 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 305 286 130 23 chr4 29983498 29983844 -172344503 - L1M4 LINE L1 -3382 2764 2382 231 163 82 0 chr4 29984007 29984056 -172344291 - L1MC2 LINE L1 -11 6333 6281 * 792 211 31 12 chr4 29984044 29984260 -172344087 - L1MC3 LINE L1 -136 7859 7432 1621 223 17 9 chr4 29984260 29984610 -172343737 - MLT1C LTR MaLR -3 464 112 1225 245 32 42 chr4 29984634 29985066 -172343281 - L1MA10 LINE L1 -28 6306 5879 * 1285 252 28 17 chr4 29985059 29985528 -172342819 - L1M4 LINE L1 -767 5379 4906 5305 185 25 4 chr4 29985542 29987264 -172341083 - L1PA16 LINE L1 -9 6157 4408 297 333 0 0 chr4 29987321 29987420 -172340927 - L1PA12 LINE L1 -5399 2182 2084 1036 355 28 39 chr4 29987506 29988145 -172340202 - L1PA12 LINE L1 -6155 1419 788 2138 259 16 0 chr4 29988153 29988786 -172339561 - L1M4 LINE L1 -1230 4916 4274 229 288 62 10 chr4 29989475 29989579 -172338768 - MIR SINE MIR -75 133 21 664 310 10 0 chr4 29990839 29991036 -172337311 + MIR SINE MIR 7 205 -57 250 316 68 60 chr4 29991894 29992027 -172336320 - MIR SINE MIR -70 192 59 27 0 0 0 chr4 29993411 29993438 -172334909 + AT_rich Low_complexity Low_complexity 1 27 0 314 256 79 37 chr4 29993581 29993745 -172334602 + L1MC/D LINE L1 5308 5478 -881 622 268 57 0 chr4 29993934 29994091 -172334256 - FRAM SINE Alu 0 166 1 264 252 16 39 chr4 29994408 29994535 -172333812 + T-rich Low_complexity Low_complexity 2 125 0 192 254 9 18 chr4 29994537 29994647 -172333700 + CT-rich Low_complexity Low_complexity 2 110 0 536 246 6 23 chr4 29995024 29995199 -172333148 + L1MC4a LINE L1 6446 6617 -1191 257 197 15 0 chr4 29996894 29996960 -172331387 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 383 82 0 0 chr4 29997530 29997579 -172330768 + L1MA4 LINE L1 6176 6224 -76 378 0 0 0 chr4 29997747 29997789 -172330558 + (CA)n Simple_repeat Simple_repeat 1 42 0 231 61 0 0 chr4 29997789 29997822 -172330525 + (GA)n Simple_repeat Simple_repeat 1 33 0 1929 137 27 48 chr4 29999661 30000033 -172328314 - THE1B LTR MaLR 0 364 1 21 57 0 0 chr4 30000039 30000074 -172328273 + AT_rich Low_complexity Low_complexity 1 35 0 2218 182 36 25 chr4 30000109 30000555 -172327792 - MER70A LTR ERVL 0 472 22 7199 133 27 55 chr4 30001225 30002543 -172325804 - Tigger1 DNA MER2_type 0 2418 1137 1517 181 203 0 chr4 30002543 30002897 -172325450 - MSTA LTR MaLR -2 426 1 4265 149 14 1 chr4 30002897 30003614 -172324733 - Tigger1 DNA MER2_type -1277 1141 416 463 198 0 12 chr4 30003606 30003692 -172324655 - Tigger1 DNA MER2_type -2330 88 4 * 229 146 0 42 chr4 30003852 30003900 -172324447 - MLT1E3 LTR MaLR -16 608 563 2339 83 3 25 chr4 30003901 30004215 -172324132 - AluY SINE Alu -4 307 1 2076 179 87 0 chr4 30004609 30005001 -172323346 + MSTB LTR MaLR 1 426 0 233 291 106 45 chr4 30005979 30006158 -172322189 + MIR SINE MIR 63 252 -10 366 23 0 0 chr4 30006162 30006205 -172322142 + (CAT)n Simple_repeat Simple_repeat 1 43 0 200 386 30 0 chr4 30006351 30006452 -172321895 + MIR3 SINE MIR 67 170 -38 323 401 77 18 chr4 30006514 30006957 -172321390 + L2 LINE L2 2584 3050 -222 261 211 92 13 chr4 30008281 30008357 -172319990 - MIR SINE MIR -95 167 86 23 33 0 0 chr4 30009584 30009614 -172318733 + AT_rich Low_complexity Low_complexity 1 30 0 221 326 11 79 chr4 30009757 30009935 -172318412 + L2 LINE L2 2809 2974 -298 415 359 41 9 chr4 30010130 30010350 -172317997 - MIR SINE MIR -1 261 35 286 305 19 19 chr4 30010394 30010499 -172317848 + MLT1J2 LTR MaLR 67 171 -279 209 269 74 37 chr4 30011279 30011387 -172316960 - MIR SINE MIR -108 154 43 25 0 0 0 chr4 30011634 30011659 -172316688 + AT_rich Low_complexity Low_complexity 1 25 0 345 323 65 19 chr4 30011787 30011942 -172316405 - MIR SINE MIR -56 206 45 225 270 16 0 chr4 30012294 30012357 -172315990 + MLT1H LTR MaLR 479 542 -7 219 260 0 0 chr4 30012363 30012413 -172315934 + (CA)n Simple_repeat Simple_repeat 2 51 0 302 291 109 86 chr4 30012573 30012958 -172315389 - MLT1K LTR MaLR -8 580 187 894 120 7 27 chr4 30013501 30013651 -172314696 + L1PA10 LINE L1 6022 6168 0 22 0 0 0 chr4 30013685 30013707 -172314640 + AT_rich Low_complexity Low_complexity 1 22 0 287 283 299 6 chr4 30013792 30013969 -172314378 - MIR SINE MIR 0 262 34 29 0 0 0 chr4 30014387 30014416 -172313931 + AT_rich Low_complexity Low_complexity 1 29 0 291 336 25 16 chr4 30015973 30016095 -172312252 - MIR SINE MIR -108 154 32 2119 108 3 22 chr4 30016120 30016436 -172311911 - AluSg SINE Alu 0 310 1 191 193 35 0 chr4 30016821 30016878 -172311469 + CT-rich Low_complexity Low_complexity 2 60 0 273 371 12 60 chr4 30017573 30017608 -172310739 - MER5A DNA MER1_type -27 162 127 1831 110 30 0 chr4 30017608 30017871 -172310476 + AluSq SINE Alu 32 302 -11 273 371 12 60 chr4 30017871 30018002 -172310345 - MER5A DNA MER1_type -62 127 4 184 333 69 20 chr4 30019526 30019628 -172308719 - MIR3 SINE MIR -45 163 57 333 224 0 51 chr4 30019827 30019925 -172308422 + L1MA2 LINE L1 6179 6271 -33 6420 141 40 1 chr4 30020452 30022217 -172306130 - L1MA2 LINE L1 -7 6297 4458 3383 196 120 10 chr4 30023407 30024344 -172304003 - L1MA2 LINE L1 -1670 4476 3349 6310 53 1 8 chr4 30025740 30026535 -172301812 - L1PA6 LINE L1 -3 6151 5362 182 266 138 32 chr4 30026563 30026657 -172301690 - L3b LINE CR1 -125 1458 1355 735 68 9 0 chr4 30026764 30026885 -172301462 - L1 LINE L1 -788 5358 5237 4179 136 23 1 chr4 30026885 30027568 -172300779 + L1MA1 LINE L1 5605 6302 0 22 80 0 0 chr4 30027945 30027995 -172300352 + AT_rich Low_complexity Low_complexity 1 50 0 347 201 73 104 chr4 30028314 30028478 -172299869 + MIR SINE MIR 49 207 -55 264 329 57 19 chr4 30028515 30028673 -172299674 + MIR SINE MIR 99 262 0 207 0 0 0 chr4 30028916 30028939 -172299408 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 279 319 6 70 chr4 30029514 30029671 -172298676 + MIR3 SINE MIR 59 205 -3 180 0 0 0 chr4 30029906 30029926 -172298421 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 319 356 57 28 chr4 30030534 30030711 -172297636 - MIR3 SINE MIR -11 197 16 2292 87 0 7 chr4 30030744 30031044 -172297303 + AluY SINE Alu 1 298 -13 212 175 0 0 chr4 30031483 30031523 -172296824 + A-rich Low_complexity Low_complexity 1 40 0 180 321 126 44 chr4 30031610 30031769 -172296578 + L2 LINE L2 2872 3043 -229 422 222 229 13 chr4 30032908 30033061 -172295286 - MIR SINE MIR -5 257 72 22 56 0 0 chr4 30033061 30033097 -172295250 + AT_rich Low_complexity Low_complexity 1 36 0 212 304 54 11 chr4 30033165 30033257 -172295090 - MIR SINE MIR -69 193 98 591 158 0 0 chr4 30033380 30033475 -172294872 - L1PA12 LINE L1 -7485 96 2 2076 110 7 3 chr4 30033478 30033788 -172294559 + L1PA12 LINE L1 5734 6044 -124 1428 81 38 9 chr4 30033788 30033991 -172294356 + L1PA12 LINE L1 5951 6167 -1 204 135 0 27 chr4 30034714 30034751 -172293596 + (GAAA)n Simple_repeat Simple_repeat 4 39 0 23 78 0 0 chr4 30034801 30034852 -172293495 + AT_rich Low_complexity Low_complexity 1 51 0 194 314 0 0 chr4 30034968 30035019 -172293328 - L2 LINE L2 0 3313 3263 264 30 0 0 chr4 30036065 30036098 -172292249 + (TG)n Simple_repeat Simple_repeat 2 34 0 610 318 75 46 chr4 30036639 30037051 -172291296 - L2 LINE L2 -589 2725 2302 372 304 174 13 chr4 30037172 30037402 -172290945 + MLT1J1 LTR MaLR 6 272 -174 276 264 128 94 chr4 30037490 30037755 -172290592 + MLT1I LTR MaLR 128 401 -8 227 323 20 10 chr4 30038064 30038163 -172290184 + MIR SINE MIR 163 262 0 2400 87 0 0 chr4 30039088 30039398 -172288949 + AluSx SINE Alu 1 310 -2 330 85 0 0 chr4 30040062 30040109 -172288238 - MADE1 DNA Mariner 0 80 34 1001 286 111 10 chr4 30040130 30040634 -172287713 + L1ME4a LINE L1 5556 6110 -11 262 253 101 0 chr4 30040752 30040831 -172287516 - L1MC4 LINE L1 -1339 6703 6617 1869 121 3 37 chr4 30040837 30041160 -172287187 - AluSx SINE Alu 0 312 1 4316 172 47 2 chr4 30041169 30041982 -172286365 - L1MB1 LINE L1 0 6168 5320 186 313 179 0 chr4 30044181 30044293 -172284054 - MIR SINE MIR -14 248 117 310 307 129 7 chr4 30045143 30045283 -172283064 - MIR SINE MIR -27 235 79 28 29 0 0 chr4 30045753 30045788 -172282559 + AT_rich Low_complexity Low_complexity 1 35 0 506 275 128 22 chr4 30046091 30046351 -172281996 + MLT1J2 LTR MaLR 42 331 -119 322 134 63 0 chr4 30046560 30046687 -172281660 + (TA)n Simple_repeat Simple_repeat 1 135 0 33 66 0 0 chr4 30046881 30046942 -172281405 + AT_rich Low_complexity Low_complexity 1 61 0 231 270 138 13 chr4 30046958 30047110 -172281237 + L1ME4a LINE L1 5947 6117 -4 22 56 0 0 chr4 30048131 30048167 -172280180 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr4 30048169 30048189 -172280158 + (TA)n Simple_repeat Simple_repeat 2 21 0 2174 109 0 16 chr4 30048529 30048841 -172279506 - AluSx SINE Alu -5 307 1 260 368 69 45 chr4 30049519 30049894 -172278453 - L2 LINE L2 0 3313 2930 664 176 7 0 chr4 30050339 30050475 -172277872 + L1MA4A LINE L1 5937 6073 -230 22 80 0 0 chr4 30050484 30050534 -172277813 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr4 30051283 30051311 -172277036 + AT_rich Low_complexity Low_complexity 1 28 0 294 328 90 0 chr4 30052068 30052202 -172276145 - MIR SINE MIR 0 262 117 480 77 0 0 chr4 30052851 30052916 -172275431 - L1PA6 LINE L1 0 6154 6090 761 255 46 0 chr4 30054241 30054498 -172273849 + L1MC3 LINE L1 6636 6862 -923 340 190 63 0 chr4 30054528 30054607 -172273740 + L1MC3 LINE L1 7176 7259 -526 2380 65 3 7 chr4 30054636 30054946 -172273401 + AluY SINE Alu 1 309 -2 396 307 88 45 chr4 30055110 30055243 -172273104 - L1MEc LINE L1 -3751 2464 2338 538 51 26 0 chr4 30055243 30055321 -172273026 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 396 307 88 45 chr4 30055321 30055521 -172272826 - L1MEc LINE L1 -3877 2338 2152 1960 147 10 0 chr4 30055599 30055899 -172272448 + AluSx SINE Alu 1 303 -9 390 264 151 0 chr4 30055945 30056104 -172272243 - MER3 DNA MER1_type -4 205 23 1498 247 53 3 chr4 30056112 30056488 -172271859 - MSTD LTR MaLR 0 396 2 14795 149 31 36 chr4 30056497 30059241 -172269106 - Tigger4(Zombi) DNA MER2_type 0 2731 1 241 245 38 19 chr4 30059777 30059883 -172268464 + L1ME LINE L1 5710 5817 -347 22 0 0 0 chr4 30060005 30060027 -172268320 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr4 30060170 30060215 -172268132 + AT_rich Low_complexity Low_complexity 1 45 0 25 65 0 0 chr4 30060526 30060572 -172267775 + AT_rich Low_complexity Low_complexity 1 46 0 676 285 60 74 chr4 30060831 30061400 -172266947 - L1MC4a LINE L1 -1910 5898 5338 24 32 0 0 chr4 30061452 30061483 -172266864 + AT_rich Low_complexity Low_complexity 1 31 0 6003 105 24 0 chr4 30062099 30062986 -172265361 - L1PA14 LINE L1 0 6161 5254 465 304 60 36 chr4 30063409 30063744 -172264603 + MLT1J1 LTR MaLR 102 444 -2 2220 95 0 3 chr4 30064595 30064910 -172263437 - L1PA7 LINE L1 -1 6153 5840 2692 188 90 15 chr4 30065294 30065907 -172262440 - L1MB8 LINE L1 -16 6162 5504 293 254 32 0 chr4 30065912 30065975 -172262372 - L2 LINE L2 -22 3291 3227 735 179 15 0 chr4 30066227 30066361 -172261986 - AluJo SINE Alu -175 137 2 413 230 11 118 chr4 30066991 30067169 -172261178 - MER5B DNA MER1_type -19 159 1 23 0 0 0 chr4 30067256 30067279 -172261068 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chr4 30067652 30067694 -172260653 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr4 30068494 30068519 -172259828 + AT_rich Low_complexity Low_complexity 1 25 0 25 75 0 0 chr4 30068708 30068761 -172259586 + AT_rich Low_complexity Low_complexity 1 53 0 983 129 0 0 chr4 30069582 30069722 -172258625 + AluSg/x SINE Alu 158 297 -15 638 307 47 30 chr4 30070790 30071090 -172257257 + MER102a DNA MER1_type 26 330 0 565 271 64 44 chr4 30072601 30072804 -172255543 - MER63A DNA MER1_type -3 207 1 656 349 120 8 chr4 30073080 30073473 -172254874 + L2 LINE L2 817 1253 -2061 2478 253 66 38 chr4 30073473 30075145 -172253202 + L1MB5 LINE L1 929 2747 -3635 1664 167 13 35 chr4 30075585 30075903 -172252444 + AluSx SINE Alu 1 311 -1 690 296 54 0 chr4 30076042 30076302 -172252045 + L1MB5 LINE L1 3904 4177 -2205 * 9822 197 24 6 chr4 30076300 30077860 -172250487 - L1 LINE L1 -1291 6274 4664 1940 162 0 22 chr4 30077860 30078175 -172250172 - AluSx SINE Alu -2 310 3 9822 197 24 6 chr4 30078175 30078794 -172249553 - L1 LINE L1 -2901 4664 4057 928 142 7 0 chr4 30078794 30078935 -172249412 + FRAM SINE Alu 20 161 -15 3677 224 41 77 chr4 30078945 30080798 -172247549 - L1 LINE L1 -3501 4064 2265 3485 226 47 18 chr4 30080931 30082379 -172245968 + L1MB5 LINE L1 4912 6403 -7 343 282 17 35 chr4 30082809 30082983 -172245364 + MER31-int LTR ERV1 1117 1287 -3649 297 232 71 52 chr4 30083023 30083178 -172245169 + MER31-int LTR ERV1 1289 1446 -3490 435 231 35 46 chr4 30083332 30083505 -172244842 + MER31-int LTR ERV1 1698 1868 -3068 238 276 0 0 chr4 30083513 30083589 -172244758 - L1MC4 LINE L1 -1326 6716 6641 921 253 147 60 chr4 30083622 30084628 -172243719 + MER31-int LTR ERV1 1921 3059 -1877 185 301 14 82 chr4 30084802 30084875 -172243472 + MER5A DNA MER1_type 34 101 -88 2353 100 0 0 chr4 30086225 30086526 -172241821 + AluSg SINE Alu 1 301 -9 1227 163 94 75 chr4 30086526 30086900 -172241447 + LTR23 LTR ERV1 55 435 -2 25 95 0 0 chr4 30087293 30087367 -172240980 + AT_rich Low_complexity Low_complexity 1 74 0 2045 113 0 7 chr4 30088079 30088361 -172239986 - AluSg SINE Alu -30 280 1 3860 167 18 20 chr4 30088550 30089262 -172239085 - MER50 LTR ERV1 -23 711 1 4969 172 24 8 chr4 30089691 30090640 -172237707 + L1MA8 LINE L1 5325 6288 -3 273 57 0 0 chr4 30090849 30090884 -172237463 + (CA)n Simple_repeat Simple_repeat 1 35 0 1024 398 23 42 chr4 30091325 30092191 -172236156 - MERVL LTR ERVL -155 5330 4470 864 357 76 17 chr4 30092197 30092774 -172235573 - MERVL LTR ERVL -1465 4189 3579 399 320 80 4 chr4 30092938 30093163 -172235184 - L1ME3A LINE L1 -255 6710 6469 316 337 0 0 chr4 30093555 30093688 -172234659 + L1ME LINE L1 5483 5615 -549 28 71 0 0 chr4 30093913 30093969 -172234378 + AT_rich Low_complexity Low_complexity 1 56 0 2204 101 7 3 chr4 30094302 30094610 -172233737 + AluSc SINE Alu 1 309 0 2029 113 3 7 chr4 30094872 30095173 -172233174 - AluSg SINE Alu -5 305 6 380 292 104 77 chr4 30095331 30095773 -172232574 - L1M4 LINE L1 -3123 3023 2570 487 327 67 0 chr4 30096212 30096420 -172231927 + MLT1H LTR MaLR 62 283 -266 298 299 41 14 chr4 30096486 30096633 -172231714 + MLT1H LTR MaLR 386 536 -13 372 307 119 34 chr4 30096655 30097033 -172231314 - L1ME3A LINE L1 -990 5951 5542 257 209 38 48 chr4 30097060 30097165 -172231182 - L1ME3A LINE L1 -1469 5472 5369 2059 164 72 8 chr4 30097718 30098120 -172230227 - MSTA LTR MaLR 0 428 1 8697 184 21 11 chr4 30098120 30099652 -172228695 - MSTA-int LTR MaLR 0 1651 99 2116 136 0 7 chr4 30099652 30099960 -172228387 - AluSg SINE Alu -4 306 1 8697 184 21 11 chr4 30099960 30100061 -172228286 - MSTA-int LTR MaLR -1552 99 1 247 65 0 0 chr4 30100070 30100101 -172228246 - MSTA LTR MaLR -15 413 383 1623 172 156 5 chr4 30100113 30100485 -172227862 - MSTA LTR MaLR 0 428 1 28 86 0 0 chr4 30101299 30101369 -172226978 + AT_rich Low_complexity Low_complexity 1 70 0 22 0 0 0 chr4 30101474 30101496 -172226851 + AT_rich Low_complexity Low_complexity 1 22 0 2381 275 52 32 chr4 30102318 30104632 -172223715 - L1MCa LINE L1 -2883 4058 1536 255 94 226 0 chr4 30104757 30104810 -172223537 - L1MC2 LINE L1 -23 6321 6257 * 461 167 49 62 chr4 30104807 30104951 -172223396 - L1MCa LINE L1 -4937 1486 1345 499 279 44 0 chr4 30105360 30105543 -172222804 - LTR33A LTR ERVL 0 523 333 186 309 36 55 chr4 30105864 30105974 -172222373 + L2 LINE L2 2282 2389 -925 499 258 62 23 chr4 30106401 30106529 -172221818 - FRAM SINE Alu -19 157 25 582 141 27 49 chr4 30107890 30108074 -172220273 + CT-rich Low_complexity Low_complexity 1 180 0 260 339 49 68 chr4 30108251 30108620 -172219727 + MLT1L LTR MaLR 172 533 -82 2349 136 8 11 chr4 30108628 30109004 -172219343 + THE1C LTR MaLR 1 375 0 9422 129 53 7 chr4 30109004 30110505 -172217842 + THE1C-int LTR MaLR 1 1571 -9 2420 132 3 16 chr4 30110513 30110893 -172217454 + THE1C LTR MaLR 1 375 0 1204 222 94 60 chr4 30111565 30111948 -172216399 - MSTD LTR MaLR 0 396 1 6080 250 57 23 chr4 30111948 30113625 -172214722 - MSTD-int LTR MaLR 0 1735 1 1559 239 33 5 chr4 30113664 30114032 -172214315 - MSTD LTR MaLR -18 378 1 331 304 36 0 chr4 30114794 30114906 -172213441 - MLT1J2 LTR MaLR -71 379 264 4903 234 80 11 chr4 30114933 30116081 -172212266 + MLT1A1-int LTR MaLR 508 1735 0 1182 205 66 28 chr4 30116105 30116393 -172211954 + MLT1A1 LTR MaLR 60 358 -7 2281 96 3 3 chr4 30116795 30117096 -172211251 - AluSg SINE Alu -9 301 1 2867 186 75 34 chr4 30117747 30118452 -172209895 + L1MB4 LINE L1 5445 6178 -2 1594 103 165 11 chr4 30118583 30118844 -172209503 + AluSx SINE Alu 1 301 -11 302 317 137 24 chr4 30119682 30119931 -172208416 + L1ME LINE L1 5533 5809 -312 204 250 19 0 chr4 30120157 30120209 -172208138 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 343 333 68 59 chr4 30121821 30122160 -172206187 + L1MEc LINE L1 38 379 -6017 1284 192 17 17 chr4 30122675 30122915 -172205432 - LTR32 LTR ERVL 0 471 232 466 139 0 0 chr4 30122974 30123046 -172205301 - LTR32 LTR ERVL -385 86 15 226 253 11 11 chr4 30123075 30123170 -172205177 + L1MEc LINE L1 871 965 -5240 320 224 53 11 chr4 30123239 30123355 -172204992 - L1MCa LINE L1 -4780 1646 1388 405 258 117 62 chr4 30123410 30123845 -172204502 - HAL1 LINE L1 -1048 1459 1001 395 331 144 27 chr4 30123922 30124179 -172204168 - HAL1 LINE L1 -1818 689 403 1492 241 26 9 chr4 30124195 30124543 -172203804 - MLT1A1 LTR MaLR -11 354 1 345 354 51 6 chr4 30124563 30124738 -172203609 - HAL1 LINE L1 -2130 377 195 781 222 66 0 chr4 30124786 30124953 -172203394 + MER58A DNA MER1_type 47 224 0 330 341 183 0 chr4 30125818 30125982 -172202365 + MIR SINE MIR 66 259 -3 22 56 0 0 chr4 30126013 30126049 -172202298 + AT_rich Low_complexity Low_complexity 1 36 0 414 162 0 0 chr4 30126275 30126349 -172201998 + (CA)n Simple_repeat Simple_repeat 2 75 0 240 35 0 0 chr4 30126759 30126788 -172201559 + (TTG)n Simple_repeat Simple_repeat 2 30 0 216 214 0 0 chr4 30127739 30127795 -172200552 + (TG)n Simple_repeat Simple_repeat 2 57 0 526 297 18 18 chr4 30128077 30128242 -172200105 + MLT2E LTR ERVL 29 193 -435 1571 138 0 0 chr4 30130134 30130380 -172197967 - Tigger5 DNA MER2_type 0 2323 2078 333 234 26 0 chr4 30130370 30130447 -172197900 - Tigger5 DNA MER2_type -2244 79 1 * 201 367 17 17 chr4 30130549 30130669 -172197678 - MIR SINE MIR -126 136 17 457 293 77 24 chr4 30131544 30131752 -172196595 - MIR SINE MIR -41 221 3 995 258 130 47 chr4 30131879 30132341 -172196006 + MLT2B1 LTR ERVL 9 452 -63 2076 153 15 3 chr4 30132341 30132682 -172195665 + MER7A DNA MER2_type 3 345 -1 995 258 130 47 chr4 30132682 30132730 -172195617 + MLT2B1 LTR ERVL 452 495 -20 239 246 0 0 chr4 30132731 30132796 -172195551 + MLT2B1 LTR ERVL 456 520 0 4875 74 1 3 chr4 30133073 30133725 -172194622 + L1PA8 LINE L1 5516 6166 -6 770 349 77 26 chr4 30134676 30135001 -172193346 + L2 LINE L2 2406 2713 -600 1351 236 143 18 chr4 30135001 30135450 -172192897 - MLT1D LTR MaLR 0 505 1 770 349 77 26 chr4 30135450 30135982 -172192365 + L2 LINE L2 2713 3311 -2 180 282 117 58 chr4 30136750 30136853 -172191494 + L2 LINE L2 3201 3309 -4 283 331 53 41 chr4 30137721 30137890 -172190457 - MIR3 SINE MIR 0 208 38 26 0 0 0 chr4 30138679 30138705 -172189642 + AT_rich Low_complexity Low_complexity 1 26 0 180 440 40 15 chr4 30138862 30139062 -172189285 + L2 LINE L2 2552 2756 -558 205 361 57 16 chr4 30139519 30139641 -172188706 + L2 LINE L2 3122 3248 -24 2535 139 8 54 chr4 30139757 30140239 -172188108 - LTR46 LTR ERV1 0 460 1 195 129 0 0 chr4 30140506 30140537 -172187810 + (TATG)n Simple_repeat Simple_repeat 2 32 0 318 26 0 0 chr4 30141065 30141104 -172187243 + (TG)n Simple_repeat Simple_repeat 1 39 0 185 0 40 0 chr4 30141103 30141128 -172187219 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 188 216 0 0 chr4 30141434 30141471 -172186876 - MIR SINE MIR -11 251 215 346 413 43 14 chr4 30141917 30142266 -172186081 - L2 LINE L2 -489 2825 2467 407 303 86 36 chr4 30143616 30143837 -172184510 - MLT1L LTR MaLR -27 588 357 21 57 0 0 chr4 30143902 30143937 -172184410 + AT_rich Low_complexity Low_complexity 1 35 0 428 259 84 14 chr4 30144658 30144801 -172183546 + MIR SINE MIR 77 229 -33 252 381 79 30 chr4 30145073 30145573 -172182774 + L2 LINE L2 2671 3192 -121 1760 222 62 46 chr4 30146248 30146793 -172181554 + MLT2B3 LTR ERVL 1 554 0 252 281 133 49 chr4 30147119 30147322 -172181025 + MIR SINE MIR 30 249 -13 265 366 60 0 chr4 30147962 30148096 -172180251 + MIR SINE MIR 91 232 -30 248 307 79 26 chr4 30148230 30148344 -172180003 - MIR SINE MIR -123 139 20 21 0 0 0 chr4 30148926 30148947 -172179400 + AT_rich Low_complexity Low_complexity 1 21 0 194 0 39 0 chr4 30150639 30150665 -172177682 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 320 346 60 13 chr4 30151273 30151736 -172176611 + L1ME3A LINE L1 3843 4327 -1819 423 296 148 33 chr4 30151881 30152483 -172175864 + L1ME3A LINE L1 4510 5180 -966 546 314 70 39 chr4 30152559 30153155 -172175192 + L1ME3A LINE L1 5305 5919 -251 21 0 0 0 chr4 30153221 30153242 -172175105 + AT_rich Low_complexity Low_complexity 1 21 0 2126 114 7 0 chr4 30154209 30154517 -172173830 - AluSg SINE Alu 0 310 1 1628 240 48 18 chr4 30154920 30155420 -172172927 + Charlie1b DNA MER1_type 9 523 0 23 0 0 0 chr4 30155621 30155644 -172172703 + AT_rich Low_complexity Low_complexity 1 23 0 25 75 0 32 chr4 30155668 30155761 -172172586 + AT_rich Low_complexity Low_complexity 1 90 0 274 164 45 15 chr4 30155884 30155951 -172172396 - L1ME3 LINE L1 -57 6105 6037 655 291 52 8 chr4 30155978 30156229 -172172118 - L1ME LINE L1 -580 5651 5390 376 291 74 23 chr4 30156362 30156671 -172171676 - L1ME LINE L1 -1023 5192 4868 * 607 246 58 29 chr4 30156667 30157012 -172171335 - L1ME LINE L1 -4070 2326 1972 542 251 105 26 chr4 30157036 30157303 -172171044 - L1ME LINE L1 -4508 1888 1601 230 177 16 113 chr4 30157366 30157428 -172170919 - HAL1 LINE L1 -1645 862 807 34 42 0 0 chr4 30157450 30157498 -172170849 + AT_rich Low_complexity Low_complexity 1 48 0 268 111 0 0 chr4 30157631 30157667 -172170680 - U2 snRNA snRNA -152 36 1 28 0 0 0 chr4 30157750 30157778 -172170569 + AT_rich Low_complexity Low_complexity 1 28 0 231 211 33 0 chr4 30157965 30158055 -172170292 + (TA)n Simple_repeat Simple_repeat 1 93 0 27 0 0 0 chr4 30158075 30158102 -172170245 + AT_rich Low_complexity Low_complexity 1 27 0 24 53 0 0 chr4 30158212 30158250 -172170097 + AT_rich Low_complexity Low_complexity 1 38 0 2183 103 0 26 chr4 30158706 30159017 -172169330 + AluSg SINE Alu 1 303 -7 24 53 0 0 chr4 30159067 30159105 -172169242 + AT_rich Low_complexity Low_complexity 1 38 0 2503 34 10 10 chr4 30159343 30159638 -172168709 + AluY SINE Alu 3 297 -14 642 220 0 0 chr4 30160554 30160695 -172167652 - L1MB1 LINE L1 -3 6165 6025 286 314 25 25 chr4 30160769 30160890 -172167457 + MIR3 SINE MIR 82 202 -6 206 333 36 0 chr4 30163082 30163166 -172165181 + L3 LINE CR1 1402 1488 -89 189 386 0 0 chr4 30164019 30164076 -172164271 - MIR SINE MIR -152 110 54 1920 112 11 0 chr4 30167664 30167950 -172160397 - HERVL-A2 LTR ERVL -5365 289 1 1517 127 26 0 chr4 30167950 30168179 -172160168 - MLT2A2 LTR ERVL 0 453 219 1084 86 0 0 chr4 30168172 30168312 -172160035 - MLT2A1 LTR ERVL -304 140 1 * 328 223 210 45 chr4 30168312 30168469 -172159878 + MER2 DNA MER2_type 163 345 0 4906 186 42 1 chr4 30169174 30170145 -172158202 + L1PA16 LINE L1 4793 5836 -330 333 0 0 0 chr4 30170145 30170182 -172158165 + (CA)n Simple_repeat Simple_repeat 2 38 0 4906 186 42 1 chr4 30170182 30170521 -172157826 + L1PA16 LINE L1 5836 6160 -6 357 223 25 25 chr4 30170939 30171060 -172157287 + MER113 DNA MER1_type? 26 146 -375 1964 195 68 8 chr4 30171401 30171796 -172156551 - MSTB LTR MaLR -7 419 1 204 67 0 0 chr4 30171846 30171876 -172156471 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2443 64 0 0 chr4 30171926 30172223 -172156124 - AluY SINE Alu -14 297 1 664 292 126 29 chr4 30172707 30173087 -172155260 - LTR50 LTR ERVL -43 752 336 239 308 77 0 chr4 30173197 30173288 -172155059 - LTR50 LTR ERVL -641 154 57 297 0 0 0 chr4 30173303 30173336 -172155011 + (CA)n Simple_repeat Simple_repeat 1 33 0 188 333 0 0 chr4 30173437 30173494 -172154853 + L3 LINE CR1 618 674 -903 2267 109 0 3 chr4 30173676 30173987 -172154360 + AluY SINE Alu 1 310 -1 377 327 20 33 chr4 30174100 30174253 -172154094 - MIR SINE MIR -8 254 104 1687 90 0 9 chr4 30174254 30174487 -172153860 - L1PA11 LINE L1 0 6174 5944 235 37 0 0 chr4 30174489 30174516 -172153831 + L1P4 LINE L1 5850 5876 -298 1931 231 23 50 chr4 30174618 30175133 -172153214 + MLT1D LTR MaLR 1 501 -4 279 0 0 0 chr4 30175223 30175254 -172153093 + (A)n Simple_repeat Simple_repeat 1 31 0 356 287 117 40 chr4 30175314 30175561 -172152786 + L2 LINE L2 2463 2728 -586 23 86 0 0 chr4 30175810 30175868 -172152479 + AT_rich Low_complexity Low_complexity 1 58 0 461 281 80 61 chr4 30175971 30176155 -172152192 - HAL1 LINE L1 -121 2386 2207 213 65 0 0 chr4 30176155 30176186 -172152161 + (CA)n Simple_repeat Simple_repeat 2 32 0 461 281 80 61 chr4 30176186 30176487 -172151860 - HAL1 LINE L1 -300 2207 1886 216 0 0 0 chr4 30176487 30176511 -172151836 + (CAA)n Simple_repeat Simple_repeat 1 24 0 461 281 80 61 chr4 30176511 30176596 -172151751 - HAL1 LINE L1 -621 1886 1804 5869 223 71 12 chr4 30177065 30178744 -172149603 + L1MA7 LINE L1 3287 5064 -1082 4678 170 26 6 chr4 30178724 30179620 -172148727 + L1MA7 LINE L1 5377 6290 -1 * 35 63 0 0 chr4 30179670 30179733 -172148614 + AT_rich Low_complexity Low_complexity 1 63 0 216 214 0 0 chr4 30179737 30179793 -172148554 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 231 217 0 43 chr4 30179804 30179873 -172148474 + (TA)n Simple_repeat Simple_repeat 2 67 0 1450 186 46 52 chr4 30179884 30180272 -172148075 + L1MB1 LINE L1 5783 6168 0 2881 228 56 22 chr4 30180279 30181247 -172147100 + L1ME1 LINE L1 5154 6148 -18 21 0 0 0 chr4 30181252 30181273 -172147074 + AT_rich Low_complexity Low_complexity 1 21 0 237 33 0 0 chr4 30182502 30182532 -172145815 + (TG)n Simple_repeat Simple_repeat 1 30 0 312 0 62 0 chr4 30182915 30182963 -172145384 + (TCTTG)n Simple_repeat Simple_repeat 2 52 0 * 814 161 0 12 chr4 30182960 30183122 -172145225 + CT-rich Low_complexity Low_complexity 2 161 0 1743 181 13 0 chr4 30183122 30183420 -172144927 - AluJb SINE Alu 0 312 11 285 303 43 93 chr4 30183420 30183582 -172144765 - LTR16B LTR ERVL -310 154 1 610 338 44 51 chr4 30184179 30184767 -172143580 - MERVL LTR ERVL -660 4825 4242 554 304 12 0 chr4 30184935 30185103 -172143244 + ERVL LTR ERVL 2565 2734 -3030 2696 274 45 15 chr4 30185111 30185841 -172142506 + ERVL LTR ERVL 3107 3858 -1906 208 236 18 0 chr4 30186149 30186204 -172142143 + GA-rich Low_complexity Low_complexity 5 60 0 459 199 8 15 chr4 30186670 30186801 -172141546 + (TCTA)n Simple_repeat Simple_repeat 2 131 0 2438 81 0 3 chr4 30187182 30187492 -172140855 - AluY SINE Alu -2 309 1 1366 295 25 48 chr4 30188806 30189411 -172138936 + L2 LINE L2 2552 3149 -164 1406 260 62 34 chr4 30189433 30189899 -172138448 + MLT2B1 LTR ERVL 2 480 -40 255 215 0 0 chr4 30189921 30189986 -172138361 + (TA)n Simple_repeat Simple_repeat 1 65 0 319 282 18 18 chr4 30190080 30190190 -172138157 + L2 LINE L2 3146 3255 -58 22 0 0 0 chr4 30191215 30191237 -172137110 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 30191395 30191420 -172136927 + AT_rich Low_complexity Low_complexity 1 25 0 1786 162 24 27 chr4 30191618 30191994 -172136353 - THE1C LTR MaLR 0 375 1 220 414 40 0 chr4 30192020 30192119 -172136228 + L2 LINE L2 3137 3239 -33 301 311 104 49 chr4 30192459 30192704 -172135643 + MIR SINE MIR 7 262 0 252 333 98 89 chr4 30193107 30193353 -172134994 + L2 LINE L2 2929 3176 -96 2527 99 96 10 chr4 30193540 30193945 -172134402 + LTR7 LTR ERV1 1 440 -10 1978 81 0 0 chr4 30193955 30194227 -172134120 + HERVH LTR ERV1 1 272 -7441 10862 116 21 36 chr4 30194227 30196161 -172132186 + HERVH LTR ERV1 1213 3288 -4425 3963 133 105 29 chr4 30196162 30197549 -172130798 - pTR5 LTR ERV1 0 2606 1524 9929 130 34 17 chr4 30197553 30199176 -172129171 + HERVH LTR ERV1 3500 5149 -2564 2710 92 47 12 chr4 30199193 30199615 -172128732 + HERVH LTR ERV1 7277 7713 0 2485 97 97 7 chr4 30199615 30200026 -172128321 + LTR7 LTR ERV1 1 448 -2 269 281 66 79 chr4 30200643 30200792 -172127555 + MIR SINE MIR 46 194 -63 1397 251 76 21 chr4 30200977 30201307 -172127040 - MLT2F LTR ERVL 0 663 353 342 0 0 0 chr4 30201307 30201345 -172127002 + (CA)n Simple_repeat Simple_repeat 2 39 0 1397 251 76 21 chr4 30201345 30201599 -172126748 - MLT2F LTR ERVL -310 353 1 22 70 0 0 chr4 30202946 30202989 -172125358 + AT_rich Low_complexity Low_complexity 1 43 0 716 284 123 7 chr4 30203021 30203306 -172125041 - LTR50 LTR ERVL -7 788 471 330 230 70 117 chr4 30203418 30203648 -172124699 - LTR50 LTR ERVL -576 219 1 34 0 0 0 chr4 30204093 30204127 -172124220 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr4 30205761 30205792 -172122555 + AT_rich Low_complexity Low_complexity 1 31 0 546 74 0 0 chr4 30206359 30206440 -172121907 - L1PA13 LINE L1 -3 6160 6080 1804 147 25 4 chr4 30206621 30206740 -172121607 + AluSx SINE Alu 1 116 -196 189 0 0 0 chr4 30206740 30206761 -172121586 + (CTA)n Simple_repeat Simple_repeat 1 21 0 1804 147 25 4 chr4 30206761 30206920 -172121427 + AluSx SINE Alu 116 285 -27 847 271 78 8 chr4 30206981 30207461 -172120886 - L1MD2 LINE L1 -54 6699 6036 682 191 0 18 chr4 30207510 30207678 -172120669 + C-rich Low_complexity Low_complexity 2 166 0 6642 255 65 35 chr4 30207724 30211352 -172116995 - L1MD2 LINE L1 -743 5797 2235 228 244 0 0 chr4 30211598 30211643 -172116704 + MIR SINE MIR 189 233 -29 379 367 114 8 chr4 30211894 30212158 -172116189 + LTR16A LTR ERVL 159 450 0 1492 186 20 57 chr4 30212694 30213048 -172115299 - MLT1B LTR MaLR -49 341 1 5590 112 25 2 chr4 30213485 30214382 -172113965 - L1PA13 LINE L1 -4 6159 5060 1848 185 180 5 chr4 30214381 30214819 -172113528 + L1PA13 LINE L1 4520 5034 -1112 * 14347 194 29 9 chr4 30215105 30221062 -172107285 - L1PB1 LINE L1 -1 6866 636 1052 130 76 0 chr4 30221064 30221249 -172107098 - L1PB1 LINE L1 -6663 200 2 269 307 11 11 chr4 30221478 30221566 -172106781 + CT-rich Low_complexity Low_complexity 4 91 0 372 242 108 0 chr4 30221863 30221983 -172106364 - MER115 DNA AcHobo -12 681 549 473 369 25 41 chr4 30222121 30222435 -172105912 - MER115 DNA AcHobo -323 370 62 2398 161 16 32 chr4 30224450 30224845 -172103502 - Tigger2a DNA MER2_type -2275 433 44 2138 106 0 7 chr4 30224845 30225147 -172103200 + AluY SINE Alu 3 302 -9 2398 161 16 32 chr4 30225147 30225191 -172103156 - Tigger2a DNA MER2_type -2664 44 1 25 83 0 0 chr4 30225381 30225441 -172102906 + AT_rich Low_complexity Low_complexity 1 60 0 263 203 8 25 chr4 30226018 30226136 -172102211 + (TA)n Simple_repeat Simple_repeat 2 117 0 182 133 33 33 chr4 30227309 30227369 -172100978 + (CATATA)n Simple_repeat Simple_repeat 5 64 0 197 382 32 49 chr4 30229187 30229310 -172099037 + L2 LINE L2 3193 3313 0 628 228 110 14 chr4 30229496 30229715 -172098632 - LTR18B LTR ERVL -9 605 366 726 271 59 20 chr4 30229776 30229979 -172098368 - LTR18A LTR ERVL -146 211 1 292 182 0 0 chr4 30230086 30230130 -172098217 - HERVL18 LTR ERVL -874 5173 5130 * 2324 152 18 18 chr4 30230123 30230472 -172097875 - HERVL18 LTR ERVL -1266 4781 4430 3081 63 78 2 chr4 30230472 30230885 -172097462 - MLT2A1 LTR ERVL 0 444 1 2324 152 18 18 chr4 30230885 30230923 -172097424 - HERVL18 LTR ERVL -1616 4431 4394 9432 143 16 11 chr4 30230925 30232379 -172095968 - HERVL18 LTR ERVL -2468 3579 2119 1400 171 3 21 chr4 30232378 30232740 -172095607 - HERVL18 LTR ERVL -4237 1810 1340 * 1433 187 34 4 chr4 30232742 30233010 -172095337 - HERVL18 LTR ERVL -5304 743 468 1186 203 63 7 chr4 30233000 30233271 -172095076 - HERVL18 LTR ERVL -5743 304 1 * 708 241 109 45 chr4 30233271 30233591 -172094756 - LTR18A LTR ERVL 0 357 20 290 159 0 0 chr4 30233593 30233637 -172094710 - LTR18A LTR ERVL -313 44 1 24 0 0 0 chr4 30234449 30234473 -172093874 + AT_rich Low_complexity Low_complexity 1 24 0 833 321 63 46 chr4 30236001 30236660 -172091687 - L2 LINE L2 -88 3225 2541 1065 242 50 14 chr4 30236683 30236960 -172091387 - L1MA10 LINE L1 -16 6318 6032 499 335 112 0 chr4 30237122 30237355 -172090992 - L2 LINE L2 -1218 2096 1838 1348 294 64 77 chr4 30237910 30238942 -172089405 + L2 LINE L2 2292 3305 -8 223 239 36 116 chr4 30238956 30239094 -172089253 - MIR SINE MIR -65 197 71 7443 33 0 1 chr4 30239130 30240538 -172087809 + L1PA3 LINE L1 4771 6177 0 22 0 0 0 chr4 30240975 30240997 -172087350 + AT_rich Low_complexity Low_complexity 1 22 0 2038 109 0 11 chr4 30241890 30242175 -172086172 - AluSc SINE Alu -8 301 20 22 35 0 0 chr4 30242441 30242470 -172085877 + AT_rich Low_complexity Low_complexity 1 29 0 291 130 0 0 chr4 30243042 30243096 -172085251 + (CAT)n Simple_repeat Simple_repeat 3 56 0 242 309 47 73 chr4 30243244 30243435 -172084912 + MIR SINE MIR 53 238 -24 498 233 106 42 chr4 30243840 30244029 -172084318 + MIR SINE MIR 13 213 -49 255 311 82 30 chr4 30244667 30244802 -172083545 + L2 LINE L2 3171 3312 -1 213 184 0 0 chr4 30245182 30245220 -172083127 + MIR SINE MIR 80 117 -145 435 307 22 0 chr4 30245261 30245398 -172082949 + MIR SINE MIR 79 218 -44 1191 212 81 28 chr4 30247222 30247618 -172080729 - Charlie1 DNA MER1_type -2 2759 2343 239 302 0 16 chr4 30247617 30247680 -172080667 - Charlie1 DNA MER1_type -2691 70 9 * 426 345 65 0 chr4 30247782 30247982 -172080365 - MIR SINE MIR -44 218 6 1358 228 12 0 chr4 30248284 30248539 -172079808 + Tigger7 DNA MER2_type 10 267 -466 322 200 0 0 chr4 30248538 30248593 -172079754 + Tigger7 DNA MER2_type 2490 2544 -43 * 274 370 40 23 chr4 30249432 30249605 -172078742 - MLT1J LTR MaLR -94 417 242 197 356 25 25 chr4 30249810 30249928 -172078419 - L2 LINE L2 0 3313 3196 3868 250 21 9 chr4 30249928 30251091 -172077256 - L1P LINE L1 -2481 3665 2489 564 186 103 26 chr4 30251102 30251258 -172077089 + L1 LINE L1 3658 3825 -2321 * 3549 213 32 10 chr4 30251232 30252112 -172076235 + L1MA2 LINE L1 2958 3856 -2290 5913 163 46 4 chr4 30252116 30253625 -172074722 + L1MA2 LINE L1 4720 6297 -7 6159 192 19 29 chr4 30253634 30253974 -172074373 + L1PA15 LINE L1 3775 4117 -2048 2133 182 39 10 chr4 30253974 30254386 -172073961 - MSTA LTR MaLR 0 428 5 8476 183 36 10 chr4 30254388 30254472 -172073875 - MSTA-int LTR MaLR 0 1651 1571 2120 116 0 23 chr4 30254472 30254643 -172073704 - AluSp SINE Alu -17 296 133 180 0 0 0 chr4 30254643 30254663 -172073684 + (TA)n Simple_repeat Simple_repeat 1 20 0 2120 116 0 23 chr4 30254663 30254793 -172073554 - AluSp SINE Alu -180 133 2 8476 183 36 10 chr4 30254793 30256317 -172072030 - MSTA-int LTR MaLR -80 1571 1 2066 168 75 10 chr4 30256317 30256717 -172071630 - MSTA LTR MaLR 0 428 3 6159 192 19 29 chr4 30256717 30256815 -172071532 + L1PA15 LINE L1 4117 4214 -1951 1909 135 7 0 chr4 30256815 30257097 -172071250 - AluSx SINE Alu -17 295 12 6159 192 19 29 chr4 30257097 30257417 -172070930 + L1PA15 LINE L1 4214 4536 -1629 1765 159 24 0 chr4 30257417 30257707 -172070640 + AluSx SINE Alu 3 299 -13 6159 192 19 29 chr4 30257707 30258681 -172069666 + L1PA15 LINE L1 4536 5483 -682 2187 87 0 13 chr4 30258681 30258992 -172069355 + AluY SINE Alu 1 307 -4 6159 192 19 29 chr4 30258992 30259663 -172068684 + L1PA15 LINE L1 5483 6159 -6 372 315 173 21 chr4 30259690 30260081 -172068266 - L2 LINE L2 -135 3178 2733 220 336 112 0 chr4 30260215 30260322 -172068025 - MIR SINE MIR -95 167 49 561 177 93 0 chr4 30260386 30260417 -172067930 - L1MB1 LINE L1 -331 5837 5810 330 26 0 0 chr4 30260417 30260456 -172067891 + (TA)n Simple_repeat Simple_repeat 2 40 0 561 177 93 0 chr4 30260456 30260564 -172067783 - L1MB1 LINE L1 -358 5810 5669 3784 202 48 1 chr4 30260566 30261323 -172067024 + MER6 DNA MER2_type 70 861 -4 2831 245 29 7 chr4 30261324 30262164 -172066183 - L1 LINE L1 -2396 3814 2957 10565 181 31 8 chr4 30262173 30264395 -172063952 - L1MA2 LINE L1 0 7723 5404 2141 107 0 16 chr4 30264395 30264704 -172063643 - AluSc SINE Alu -5 304 1 10565 181 31 8 chr4 30264704 30265795 -172062552 - L1MA2 LINE L1 -2319 5404 4339 5063 214 23 13 chr4 30265791 30266844 -172061503 - L1MA2 LINE L1 -6487 1078 16 * 4583 260 82 38 chr4 30266848 30268494 -172059853 - L1 LINE L1 -3233 2977 1404 222 91 0 0 chr4 30268494 30268527 -172059820 + (TG)n Simple_repeat Simple_repeat 2 34 0 4583 260 82 38 chr4 30268527 30268743 -172059604 - L1 LINE L1 -4806 1404 1199 192 40 0 0 chr4 30268743 30268768 -172059579 + (TC)n Simple_repeat Simple_repeat 2 26 0 4583 260 82 38 chr4 30268768 30270065 -172058282 - L1 LINE L1 -5011 1199 3 327 49 0 0 chr4 30270689 30270730 -172057617 + (CA)n Simple_repeat Simple_repeat 2 42 0 284 299 0 0 chr4 30271206 30271283 -172057064 - MLT1L LTR MaLR -536 79 3 261 298 164 19 chr4 30271301 30271405 -172056942 + MIR SINE MIR 49 167 -95 484 193 0 55 chr4 30271419 30271528 -172056819 + FLAM_C SINE Alu 39 141 -2 23 33 0 0 chr4 30271528 30271558 -172056789 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr4 30271847 30271889 -172056458 + AT_rich Low_complexity Low_complexity 1 42 0 404 329 81 24 chr4 30272273 30272519 -172055828 - MIR SINE MIR 0 262 3 28 61 0 0 chr4 30273376 30273425 -172054922 + AT_rich Low_complexity Low_complexity 1 49 0 975 201 80 128 chr4 30273875 30274274 -172054073 - MER67C LTR ERV1 -2 512 95 2076 98 3 7 chr4 30274274 30274559 -172053788 + AluSx SINE Alu 13 296 -16 438 20 0 0 chr4 30274568 30274619 -172053728 + (CA)n Simple_repeat Simple_repeat 2 52 0 975 201 80 128 chr4 30274619 30274736 -172053611 - MER67C LTR ERV1 -427 87 11 564 40 0 0 chr4 30275482 30275556 -172052791 + AluY SINE Alu 231 304 -8 393 75 0 0 chr4 30275556 30275609 -172052738 + (TA)n Simple_repeat Simple_repeat 2 54 0 27 0 0 0 chr4 30275681 30275708 -172052639 + AT_rich Low_complexity Low_complexity 1 27 0 1547 90 0 0 chr4 30275806 30276006 -172052341 - AluSc SINE Alu -22 287 88 915 105 7 14 chr4 30276006 30276149 -172052198 + AluSg/x SINE Alu 170 311 -1 205 284 148 11 chr4 30276149 30276237 -172052110 - L2 LINE L2 -589 2725 2626 286 292 76 40 chr4 30278854 30279155 -172049192 - L1ME4a LINE L1 -181 5940 5629 213 186 17 17 chr4 30280785 30280844 -172047503 + (TA)n Simple_repeat Simple_repeat 2 60 0 939 201 70 5 chr4 30281325 30281524 -172046823 - AluJb SINE Alu -16 296 85 253 317 21 35 chr4 30282473 30282615 -172045732 - L2 LINE L2 -1067 2247 2108 21 89 0 0 chr4 30282724 30282780 -172045567 + AT_rich Low_complexity Low_complexity 1 56 0 3246 100 7 0 chr4 30282973 30283423 -172044924 + MLT2A2 LTR ERVL 1 453 0 21 95 0 0 chr4 30284197 30284260 -172044087 + AT_rich Low_complexity Low_complexity 1 63 0 22 70 0 0 chr4 30285437 30285480 -172042867 + AT_rich Low_complexity Low_complexity 1 43 0 445 311 68 37 chr4 30286017 30286445 -172041902 + L1MDa LINE L1 1534 1974 -4566 4216 40 28 4 chr4 30286479 30287008 -172041339 - L1PA5 LINE L1 0 6154 5613 22 35 0 0 chr4 30287239 30287268 -172041079 + AT_rich Low_complexity Low_complexity 1 29 0 348 346 64 26 chr4 30287876 30288142 -172040205 + L1ME LINE L1 5530 5805 -316 7333 197 39 18 chr4 30288151 30290095 -172038252 + L1PB4 LINE L1 3488 5480 -744 2670 196 22 75 chr4 30290209 30290927 -172037420 + L1PB4 LINE L1 5476 6155 -1 315 173 63 16 chr4 30291180 30291307 -172037040 + (TA)n Simple_repeat Simple_repeat 1 133 0 322 266 43 103 chr4 30291353 30291537 -172036810 + MIR SINE MIR 46 218 -44 2044 142 0 0 chr4 30291666 30291976 -172036371 - AluSx SINE Alu -2 310 1 1844 118 73 0 chr4 30292720 30293009 -172035338 - AluSx SINE Alu -2 310 1 21 36 0 0 chr4 30295566 30295594 -172032753 + AT_rich Low_complexity Low_complexity 1 28 0 12408 123 15 29 chr4 30295620 30296681 -172031666 + L1PA6 LINE L1 11 1031 -5115 2238 100 3 3 chr4 30296681 30296990 -172031357 - AluY SINE Alu 0 311 3 12408 123 15 29 chr4 30296990 30297950 -172030397 + L1PA6 LINE L1 1031 2003 -4143 16695 76 1 0 chr4 30297950 30301002 -172027345 + L1PA6 LINE L1 3091 6153 -1 2266 267 63 36 chr4 30301002 30301759 -172026588 + L1MC/D LINE L1 113 890 -5969 1199 197 29 0 chr4 30301759 30302003 -172026344 - MER57A LTR ERV1 0 403 153 2353 146 5 8 chr4 30302003 30302379 -172025968 - THE1C LTR MaLR 0 375 1 9847 129 42 3 chr4 30302388 30303896 -172024451 - THE1C-int LTR MaLR -10 1570 4 2456 118 5 13 chr4 30303896 30304270 -172024077 - THE1C LTR MaLR -4 371 1 714 183 0 0 chr4 30304274 30304400 -172023947 - MER57A LTR ERV1 -250 153 28 3097 213 51 20 chr4 30304401 30305322 -172023025 + L1MC/D LINE L1 922 1868 -4987 827 225 62 0 chr4 30305332 30305510 -172022837 - MLT1D LTR MaLR 0 505 317 57 61 0 0 chr4 30306027 30306126 -172022221 + AT_rich Low_complexity Low_complexity 1 99 0 568 242 39 35 chr4 30307005 30307261 -172021086 + L1MC/D LINE L1 3301 3557 -3400 464 77 0 0 chr4 30307262 30307327 -172021020 + L1PA4 LINE L1 6083 6147 -8 584 229 84 49 chr4 30307331 30307718 -172020629 + L1MC/D LINE L1 3662 4039 -2918 * 1886 179 99 11 chr4 30307690 30308126 -172020221 + L1MC/D LINE L1 6065 6538 -515 2113 124 0 0 chr4 30308493 30308792 -172019555 - AluSc SINE Alu -10 299 1 231 317 166 55 chr4 30308909 30309191 -172019156 + L2 LINE L2 1836 2176 -1138 1982 155 0 13 chr4 30309191 30309508 -172018839 - AluSq SINE Alu 0 313 1 231 317 166 55 chr4 30309508 30309623 -172018724 + L2 LINE L2 2176 2277 -1037 2301 92 0 16 chr4 30309859 30310164 -172018183 + AluSg SINE Alu 1 300 -10 586 287 70 41 chr4 30310281 30310525 -172017822 - MIR SINE MIR 0 262 12 201 250 73 15 chr4 30310644 30310712 -172017635 + L3 LINE CR1 215 286 -1291 294 344 79 32 chr4 30311703 30312072 -172016275 - L2 LINE L2 -2 3311 2926 302 177 25 13 chr4 30312839 30312918 -172015429 + L1MD1 LINE L1 6152 6231 -11 367 270 70 87 chr4 30312943 30313128 -172015219 + MLT1G LTR MaLR 92 273 -317 212 308 0 0 chr4 30313372 30313437 -172014910 + CT-rich Low_complexity Low_complexity 3 67 0 1409 334 101 44 chr4 30313596 30314774 -172013573 - L2 LINE L2 -297 3016 1764 206 211 0 0 chr4 30314838 30314876 -172013471 - MIR SINE MIR -108 154 117 199 171 0 0 chr4 30315656 30315691 -172012656 - L2 LINE L2 0 3272 3238 489 248 47 0 chr4 30315701 30315830 -172012517 - L2 LINE L2 0 3313 3179 641 34 0 22 chr4 30316534 30316623 -172011724 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 260 273 0 11 chr4 30316983 30317071 -172011276 - L1MC4 LINE L1 -1339 6703 6617 664 117 22 39 chr4 30317093 30317273 -172011074 + (TATG)n Simple_repeat Simple_repeat 2 178 0 288 177 52 31 chr4 30317273 30317369 -172010978 + (TATATG)n Simple_repeat Simple_repeat 5 102 0 244 138 35 17 chr4 30317369 30317427 -172010920 - L1MCa LINE L1 -4362 2064 2006 242 313 71 36 chr4 30317467 30317579 -172010768 - MIR SINE MIR -72 190 75 2437 144 44 2 chr4 30317857 30318268 -172010079 - MSTA LTR MaLR 0 428 1 307 277 20 10 chr4 30318273 30318374 -172009973 + L1MEd LINE L1 57 158 -5961 254 231 65 112 chr4 30318418 30318587 -172009760 + L1MEd LINE L1 274 434 -5685 215 298 21 32 chr4 30319811 30319905 -172008442 - L2 LINE L2 -87 3226 3134 217 93 23 23 chr4 30320773 30320816 -172007531 + (TA)n Simple_repeat Simple_repeat 1 43 0 21 36 0 0 chr4 30322580 30322608 -172005739 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 30323018 30323041 -172005306 + AT_rich Low_complexity Low_complexity 1 23 0 599 273 53 19 chr4 30323326 30323535 -172004812 - MER20 DNA MER1_type 0 219 4 372 271 150 0 chr4 30323614 30323747 -172004600 + Charlie2 DNA MER1_type 318 470 -2312 487 133 0 20 chr4 30323814 30323912 -172004435 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 661 104 0 17 chr4 30324020 30324135 -172004212 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 2181 131 0 0 chr4 30325166 30325478 -172002869 - AluSx SINE Alu 0 312 1 317 243 0 14 chr4 30326440 30326514 -172001833 + Tigger5 DNA MER2_type 7 79 -2244 401 213 25 0 chr4 30326563 30326643 -172001704 + Tigger5 DNA MER2_type 2242 2323 0 387 41 0 0 chr4 30326863 30326912 -172001435 + (CA)n Simple_repeat Simple_repeat 2 50 0 459 152 0 0 chr4 30328487 30328566 -171999781 + (TG)n Simple_repeat Simple_repeat 2 80 0 27 49 0 0 chr4 30328912 30328953 -171999394 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr4 30329447 30329472 -171998875 + AT_rich Low_complexity Low_complexity 1 25 0 2049 117 3 7 chr4 30329626 30329916 -171998431 - AluSq SINE Alu -24 289 1 1315 180 63 4 chr4 30329975 30330214 -171998133 - AluJo SINE Alu -47 265 13 735 250 47 5 chr4 30330241 30330433 -171997914 + L1M4c LINE L1 17 216 -6168 4541 147 90 35 chr4 30330433 30331442 -171996905 + pTR5 LTR ERV1 743 2021 -417 329 257 10 0 chr4 30331443 30331544 -171996803 + LTR30 LTR ERV1 541 642 -80 2341 93 0 0 chr4 30331544 30331867 -171996480 + pTR5 LTR ERV1 66 388 -2050 1567 210 44 26 chr4 30331867 30332210 -171996137 + L1M4c LINE L1 209 557 -5827 701 94 17 2 chr4 30332222 30332457 -171995890 + AluSx SINE Alu 1 294 -15 701 122 0 0 chr4 30332500 30332607 -171995740 + AluSg/x SINE Alu 204 310 0 892 188 30 20 chr4 30332609 30332806 -171995541 + L1M4c LINE L1 570 768 -5616 1291 248 39 3 chr4 30332806 30333092 -171995255 + MLT1A1 LTR MaLR 1 296 -69 1307 214 33 85 chr4 30333092 30333490 -171994857 + MLT2B3 LTR ERVL 1 377 -177 2081 99 0 64 chr4 30333492 30333680 -171994667 - AluSx SINE Alu -3 309 111 213 45 45 23 chr4 30333680 30333724 -171994623 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2218 90 0 0 chr4 30333724 30334002 -171994345 - AluY SINE Alu -30 281 4 2081 99 0 64 chr4 30334002 30334124 -171994223 - AluSx SINE Alu -199 113 18 4303 102 23 58 chr4 30334210 30334919 -171993428 - LTR12 LTR ERV1 0 688 5 2280 179 16 23 chr4 30334935 30335543 -171992804 - pTR5 LTR ERV1 -1094 1344 741 279 0 0 0 chr4 30337419 30337450 -171990897 + (TG)n Simple_repeat Simple_repeat 2 32 0 492 198 16 8 chr4 30337639 30337765 -171990582 - L1 LINE L1 -804 5342 5216 377 179 0 12 chr4 30337753 30337837 -171990510 - L1M4c LINE L1 -5190 1194 1112 * 2757 230 19 20 chr4 30337827 30338301 -171990046 + L1MC3 LINE L1 7066 7540 -245 1940 154 12 35 chr4 30338301 30338646 -171989701 - MER1B DNA MER1_type 0 337 1 2757 230 19 20 chr4 30338646 30338875 -171989472 + L1MC3 LINE L1 7540 7768 -17 1319 195 61 0 chr4 30338892 30339093 -171989254 + L1 LINE L1 4234 4421 -1725 2190 118 7 0 chr4 30339093 30339397 -171988950 + AluSp SINE Alu 1 306 -7 1319 195 61 0 chr4 30339397 30339554 -171988793 + L1 LINE L1 4421 4614 -1532 949 261 12 0 chr4 30339554 30339799 -171988548 + L1MB3 LINE L1 4013 4260 -1886 708 235 6 16 chr4 30339813 30339996 -171988351 + L1MB3 LINE L1 4735 4915 -1231 1525 249 2 2 chr4 30339998 30340392 -171987955 - L1 LINE L1 -979 5167 4774 324 231 24 0 chr4 30340408 30340508 -171987839 + L1MB3 LINE L1 5579 5682 -489 10432 147 40 30 chr4 30340509 30342426 -171985921 - Tigger1 DNA MER2_type 0 2418 483 228 266 64 11 chr4 30342450 30342476 -171985871 - L1MA4A LINE L1 -15 6288 6263 3637 179 29 8 chr4 30342476 30343224 -171985123 - L1PB4 LINE L1 -23 6133 5370 876 166 13 0 chr4 30343225 30343376 -171984971 - Tigger1 DNA MER2_type -1936 482 330 816 215 31 20 chr4 30343374 30343569 -171984778 - Tigger1 DNA MER2_type -2221 197 1 * 2254 164 17 54 chr4 30343569 30344026 -171984321 + L1MB3 LINE L1 5682 6119 -64 2092 134 10 0 chr4 30344026 30344324 -171984023 + AluSx SINE Alu 1 301 -11 2254 164 17 54 chr4 30344324 30344383 -171983964 + L1MB3 LINE L1 6119 6179 -4 229 344 36 18 chr4 30344446 30344836 -171983511 + L1 LINE L1 3842 4238 -1908 350 248 41 25 chr4 30345101 30345222 -171983125 + L1ME2 LINE L1 3602 3724 -2422 2589 277 78 23 chr4 30345247 30346913 -171981434 + L1ME2 LINE L1 3807 5563 -601 2041 160 6 17 chr4 30346913 30347264 -171981083 + THE1C LTR MaLR 1 401 -27 440 87 0 14 chr4 30347372 30347441 -171980906 - L1PB1 LINE L1 -28 6123 6056 3093 217 18 3 chr4 30347444 30348172 -171980175 + L1 LINE L1 4663 5401 -745 1062 217 114 89 chr4 30348194 30348271 -171980076 + L1ME2 LINE L1 5539 5613 -551 186 103 0 0 chr4 30348271 30348300 -171980047 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1062 217 114 89 chr4 30348300 30348376 -171979971 + L1ME2 LINE L1 5613 5686 -478 1922 119 0 0 chr4 30348376 30348629 -171979718 + AluSg SINE Alu 1 253 -57 1062 217 114 89 chr4 30348629 30349038 -171979309 + L1ME2 LINE L1 5686 6143 -21 787 260 215 16 chr4 30349061 30349195 -171979152 + L1MC4 LINE L1 6473 6579 -1463 288 0 0 0 chr4 30349195 30349227 -171979120 + (TG)n Simple_repeat Simple_repeat 1 32 0 787 260 215 16 chr4 30349227 30349589 -171978758 + L1MC4 LINE L1 6579 7068 -974 201 74 0 0 chr4 30349590 30349617 -171978730 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 980 262 123 62 chr4 30349673 30350459 -171977888 + L1MC4 LINE L1 7209 8042 0 2036 179 41 24 chr4 30350469 30350971 -171977376 + MLT2A2 LTR ERVL 1 510 -44 232 132 26 92 chr4 30350969 30351045 -171977302 + MLT2C2 LTR ERVL 393 463 -1 * 379 242 58 127 chr4 30351086 30351346 -171977001 + HAL1 LINE L1 378 619 -1888 410 254 65 7 chr4 30351469 30351607 -171976740 + L2 LINE L2 2376 2521 -793 256 303 36 51 chr4 30351707 30351902 -171976445 + L2 LINE L2 3119 3310 -3 237 306 111 9 chr4 30352085 30352193 -171976154 - MIR SINE MIR -72 190 72 1970 221 81 12 chr4 30352223 30352969 -171975378 - L1ME2 LINE L1 -16 6566 5743 2641 259 44 37 chr4 30353049 30354428 -171973919 - L1ME2 LINE L1 -2691 3873 2526 729 284 68 46 chr4 30354613 30355109 -171973238 - L1MC4a LINE L1 -303 5818 5392 957 356 141 22 chr4 30355139 30356139 -171972208 - L3 LINE CR1 -166 1411 293 948 82 8 0 chr4 30356169 30356303 -171972044 - L1PB1 LINE L1 0 6151 6017 2717 251 67 13 chr4 30356303 30357433 -171970914 - L1ME2 LINE L1 -4605 1959 671 278 250 15 0 chr4 30357434 30357502 -171970845 + L1M4b LINE L1 435 503 -6356 554 294 68 36 chr4 30357535 30357787 -171970560 + MIR SINE MIR 1 260 -2 22 0 0 0 chr4 30357791 30357813 -171970534 + AT_rich Low_complexity Low_complexity 1 22 0 774 202 6 17 chr4 30357919 30358092 -171970255 + LTR56 LTR ERV1 10 180 -265 191 307 67 13 chr4 30358093 30358168 -171970179 - MER5A DNA MER1_type -103 86 8 342 0 0 0 chr4 30359517 30359555 -171968792 + (CA)n Simple_repeat Simple_repeat 1 38 0 21 89 0 0 chr4 30360760 30360816 -171967531 + AT_rich Low_complexity Low_complexity 1 56 0 2239 111 0 0 chr4 30361018 30361325 -171967022 + AluY SINE Alu 1 307 -4 778 310 43 21 chr4 30362329 30362658 -171965689 - MLT1I LTR MaLR -55 354 19 1709 195 76 22 chr4 30362774 30363180 -171965167 - MSTA LTR MaLR 0 428 1 313 316 14 18 chr4 30363673 30363891 -171964456 + L1 LINE L1 3884 4100 -2046 285 305 42 0 chr4 30363989 30364084 -171964263 + L2 LINE L2 2293 2391 -923 286 265 100 41 chr4 30364090 30364260 -171964087 - MLT1F1 LTR MaLR -5 562 383 25 0 0 0 chr4 30364383 30364408 -171963939 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr4 30364594 30364617 -171963730 + AT_rich Low_complexity Low_complexity 1 23 0 203 233 47 12 chr4 30364785 30364871 -171963476 + (TTATA)n Simple_repeat Simple_repeat 2 90 0 932 259 27 23 chr4 30364894 30365157 -171963190 - L1ME LINE L1 -345 5776 5513 22 0 0 0 chr4 30365352 30365374 -171962973 + AT_rich Low_complexity Low_complexity 1 22 0 206 202 37 55 chr4 30365412 30365521 -171962826 + T-rich Low_complexity Low_complexity 3 109 0 504 165 0 0 chr4 30365579 30365692 -171962655 - AluSg/x SINE Alu 0 312 200 183 261 34 80 chr4 30368473 30368561 -171959786 - MIR3 SINE MIR -17 191 108 1657 143 56 0 chr4 30368791 30369121 -171959226 - AluSx SINE Alu 0 345 1 313 300 0 0 chr4 30369122 30369192 -171959155 + Tigger5 DNA MER2_type 2254 2323 0 686 270 92 65 chr4 30369731 30370528 -171957819 - L1ME LINE L1 -1235 4911 4094 395 306 25 16 chr4 30370639 30370760 -171957587 - L2 LINE L2 -1 3312 3191 394 321 57 28 chr4 30371500 30372101 -171956246 - L1ME LINE L1 -2404 3742 3125 206 31 0 31 chr4 30373675 30373707 -171954640 + (TTATA)n Simple_repeat Simple_repeat 2 32 0 830 209 0 0 chr4 30373707 30373855 -171954492 - FRAM SINE Alu -29 147 1 3039 177 9 2 chr4 30373878 30374410 -171953937 - L1PA16 LINE L1 -1 6165 5630 2258 137 14 13 chr4 30374410 30374876 -171953471 + L1PA16 LINE L1 5158 5625 -541 24 32 0 0 chr4 30375869 30375900 -171952447 + AT_rich Low_complexity Low_complexity 1 31 0 354 372 25 15 chr4 30375930 30376126 -171952221 - MIR SINE MIR -58 204 7 21 0 0 0 chr4 30376170 30376191 -171952156 + AT_rich Low_complexity Low_complexity 1 21 0 198 301 39 48 chr4 30376217 30376320 -171952027 - MIR SINE MIR -48 214 113 225 163 0 0 chr4 30376610 30376659 -171951688 + (CA)n Simple_repeat Simple_repeat 2 50 0 455 320 7 0 chr4 30376950 30377097 -171951250 - L3 LINE CR1 -154 1423 1276 2355 35 0 3 chr4 30377421 30377705 -171950642 + L1PA3 LINE L1 5870 6152 -3 636 230 69 39 chr4 30377865 30378069 -171950278 - MER76 LTR ERV 0 688 479 383 254 6 95 chr4 30378085 30378254 -171950093 + MLT1H LTR MaLR 394 547 -2 2175 121 0 0 chr4 30378442 30378749 -171949598 - AluSg SINE Alu -3 307 1 294 223 170 0 chr4 30379538 30379632 -171948715 + L2 LINE L2 3199 3308 -5 309 222 0 33 chr4 30379672 30379762 -171948585 + GA-rich Low_complexity Low_complexity 2 88 0 322 233 0 35 chr4 30380055 30380141 -171948206 + L2 LINE L2 978 1060 -2254 3679 157 42 10 chr4 30380306 30381001 -171947346 - L1MA2 LINE L1 -1 7722 7006 4001 186 38 2 chr4 30381001 30381839 -171946508 - L1MA2 LINE L1 -920 6645 5778 * 8040 181 56 9 chr4 30381832 30384794 -171943553 - L1MA2 LINE L1 -2272 5293 2184 1082 123 12 6 chr4 30434849 30435012 -171893335 + AluJb SINE Alu 136 299 -13 1046 189 55 10 chr4 30435166 30435367 -171892980 + MER1B DNA MER1_type 1 210 -87 404 208 0 14 chr4 30435357 30435429 -171892918 + MER1B DNA MER1_type 259 329 0 * 24 0 0 0 chr4 30435603 30435627 -171892720 + AT_rich Low_complexity Low_complexity 1 24 0 238 315 56 0 chr4 30436514 30436603 -171891744 - MIR SINE MIR -68 140 47 1382 199 119 51 chr4 30436652 30437023 -171891324 + MSTD LTR MaLR 1 396 0 659 111 37 0 chr4 30437349 30437457 -171890890 + MER7A DNA MER2_type 59 168 -178 2135 140 0 0 chr4 30439277 30439577 -171888770 - AluSx SINE Alu -11 301 2 398 244 71 31 chr4 30439602 30439729 -171888618 + L2 LINE L2 3182 3313 0 2439 41 0 0 chr4 30440477 30440770 -171887577 + L1PA3 LINE L1 5860 6152 -3 314 361 47 33 chr4 30441016 30441290 -171887057 + L2 LINE L2 2463 2740 -574 737 182 42 0 chr4 30441298 30441441 -171886906 - MER61E LTR ERV1 -4 565 417 1397 119 0 50 chr4 30441441 30441701 -171886646 - MER61E LTR ERV1 -322 247 1 25 51 0 0 chr4 30443003 30443042 -171885305 + AT_rich Low_complexity Low_complexity 1 39 0 196 266 28 119 chr4 30443455 30443598 -171884749 - L2 LINE L2 -533 2781 2652 597 216 49 31 chr4 30443728 30443890 -171884457 - MER2 DNA MER2_type 0 345 181 228 111 0 0 chr4 30444204 30444240 -171884107 + (TG)n Simple_repeat Simple_repeat 2 37 0 551 239 33 49 chr4 30444473 30444657 -171883690 + LTR33 LTR ERVL 341 521 0 180 77 0 0 chr4 30444700 30444726 -171883621 + (TA)n Simple_repeat Simple_repeat 1 26 0 195 42 0 0 chr4 30446226 30446250 -171882097 + (A)n Simple_repeat Simple_repeat 1 24 0 1619 237 136 34 chr4 30446475 30447028 -171881319 + MLT1E2 LTR MaLR 18 626 0 192 182 0 0 chr4 30447089 30447133 -171881214 + T-rich Low_complexity Low_complexity 3 46 0 2284 106 0 0 chr4 30447272 30447583 -171880764 - AluY SINE Alu 0 311 1 1918 194 43 61 chr4 30447930 30448436 -171879911 - MLT1D LTR MaLR -8 497 1 334 322 114 14 chr4 30448442 30448665 -171879682 + MIR SINE MIR 20 262 0 21 0 0 0 chr4 30448895 30448916 -171879431 + AT_rich Low_complexity Low_complexity 1 21 0 1805 209 91 9 chr4 30448984 30449414 -171878933 - MLT1C LTR MaLR 0 467 3 8360 208 24 66 chr4 30449620 30450300 -171878047 + L1P3 LINE L1 623 1330 -5131 180 97 0 0 chr4 30450300 30450331 -171878016 + (CAA)n Simple_repeat Simple_repeat 2 32 0 8360 208 24 66 chr4 30450331 30452193 -171876154 + L1P3 LINE L1 1330 3072 -3389 478 82 10 41 chr4 30452294 30452392 -171875955 + (TCC)n Simple_repeat Simple_repeat 3 97 0 578 271 96 118 chr4 30452395 30452524 -171875823 + LTR38B LTR ERV1 42 172 -418 2029 110 0 71 chr4 30452524 30452659 -171875688 + AluY SINE Alu 1 144 -167 2323 78 0 31 chr4 30452659 30452979 -171875368 + AluY SINE Alu 1 310 -1 2029 110 0 71 chr4 30452979 30453169 -171875178 + AluY SINE Alu 144 303 -8 578 271 96 118 chr4 30453169 30453334 -171875013 + LTR38B LTR ERV1 172 339 -251 2518 72 0 0 chr4 30453334 30453639 -171874708 + AluY SINE Alu 5 309 -2 578 271 96 118 chr4 30453639 30453876 -171874471 + LTR38B LTR ERV1 339 590 0 180 0 0 0 chr4 30453990 30454010 -171874337 + (T)n Simple_repeat Simple_repeat 1 20 0 591 92 0 0 chr4 30454354 30454441 -171873906 + (TA)n Simple_repeat Simple_repeat 2 88 0 1231 217 13 107 chr4 30454532 30454924 -171873423 + MLT1A1 LTR MaLR 1 355 -10 1057 281 19 59 chr4 30455021 30455445 -171872902 - MER92B LTR ERV1 -4 632 226 596 264 5 26 chr4 30458103 30458296 -171870051 - MLT1D LTR MaLR -2 503 315 * 787 246 110 92 chr4 30458287 30458580 -171869767 - MLT1E2 LTR MaLR -229 397 94 1674 176 39 59 chr4 30458580 30459018 -171869329 + MSTB1 LTR MaLR 4 432 0 787 246 110 92 chr4 30459018 30459114 -171869233 - MLT1E2 LTR MaLR -532 94 1 2069 185 12 10 chr4 30459190 30459590 -171868757 - MLT2D LTR ERVL -13 401 1 332 288 0 0 chr4 30459647 30459727 -171868620 - MIR SINE MIR -101 161 82 336 381 37 9 chr4 30460068 30460283 -171868064 - LTR16C LTR ERVL 0 491 271 973 225 66 93 chr4 30460702 30460960 -171867387 - MLT1D LTR MaLR -2 503 215 1277 128 74 8 chr4 30461034 30461291 -171867056 - L1MA8 LINE L1 0 6291 6018 21 36 0 0 chr4 30461422 30461450 -171866897 + AT_rich Low_complexity Low_complexity 1 28 0 1450 241 67 75 chr4 30461747 30462291 -171866056 + MER77 LTR ERV1 89 602 -3 229 240 64 123 chr4 30462657 30462861 -171865486 + MLT1H LTR MaLR 229 420 -129 23 33 0 0 chr4 30463253 30463283 -171865064 + AT_rich Low_complexity Low_complexity 1 30 0 1606 180 41 51 chr4 30463521 30463915 -171864432 + MLT1B LTR MaLR 1 390 0 38 0 0 0 chr4 30464165 30464203 -171864144 + AT_rich Low_complexity Low_complexity 1 38 0 1124 204 25 51 chr4 30464971 30465246 -171863101 - MSTD LTR MaLR 0 396 129 615 95 0 38 chr4 30465246 30465351 -171862996 - L1MA2 LINE L1 -157 6147 6047 308 196 0 0 chr4 30465351 30465407 -171862940 - MSTD LTR MaLR -372 56 1 26 64 0 0 chr4 30466300 30466347 -171862000 + AT_rich Low_complexity Low_complexity 1 47 0 352 354 6 0 chr4 30467025 30467186 -171861161 - L1ME LINE L1 -524 5646 5485 4930 72 1 3 chr4 30467223 30467874 -171860473 + L1PA8 LINE L1 5523 6172 0 412 161 11 21 chr4 30467903 30467996 -171860351 - L1MA4A LINE L1 -5 6298 6207 12252 118 14 4 chr4 30468820 30470748 -171857599 - L1P LINE L1 -1453 4693 2747 2414 125 31 19 chr4 30470748 30470796 -171857551 + L1PB1 LINE L1 5732 5778 -373 396 79 13 26 chr4 30470796 30470872 -171857475 + (TA)n Simple_repeat Simple_repeat 2 76 0 2414 125 31 19 chr4 30470872 30471235 -171857112 + L1PB1 LINE L1 5778 6151 0 28 0 0 0 chr4 30471931 30471959 -171856388 + AT_rich Low_complexity Low_complexity 1 28 0 226 337 0 0 chr4 30472715 30472804 -171855543 - L1MC4 LINE L1 -1341 6701 6613 203 152 22 0 chr4 30472812 30472858 -171855489 + (TA)n Simple_repeat Simple_repeat 1 47 0 255 173 0 0 chr4 30472915 30472967 -171855380 + (TA)n Simple_repeat Simple_repeat 1 52 0 208 139 0 0 chr4 30474592 30474628 -171853719 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 2514 143 61 15 chr4 30474799 30475374 -171852973 + MER4E LTR ERV1 1 766 0 839 172 0 0 chr4 30475606 30475751 -171852596 + L1PBa LINE L1 1 145 -6718 5509 122 206 25 chr4 30475897 30476967 -171851380 + L1PBa LINE L1 636 1899 -4964 583 300 39 46 chr4 30477309 30477569 -171850778 + MIR SINE MIR 2 259 -3 332 221 105 0 chr4 30477594 30477680 -171850667 - MSTB1 LTR MaLR 0 432 338 1527 193 129 27 chr4 30477834 30478238 -171850109 - L1MB8 LINE L1 -7 6171 5727 * 3346 261 50 29 chr4 30478231 30479193 -171849154 - L1M4b LINE L1 -5877 982 1 1981 143 3 7 chr4 30479198 30479506 -171848841 + AluSx SINE Alu 5 311 -1 370 176 11 11 chr4 30479506 30479597 -171848750 + GA-rich Low_complexity Low_complexity 2 92 0 267 308 149 0 chr4 30480773 30480880 -171847467 + MIR SINE MIR 20 142 -66 450 53 0 0 chr4 30481034 30481091 -171847256 + (TG)n Simple_repeat Simple_repeat 2 58 0 2237 81 0 34 chr4 30482329 30482649 -171845698 + AluSc SINE Alu 1 309 0 202 216 20 0 chr4 30482898 30482949 -171845398 + (CAAG)n Simple_repeat Simple_repeat 1 52 0 1822 116 36 11 chr4 30484139 30484416 -171843931 + AluSx SINE Alu 1 284 -28 228 67 0 0 chr4 30484416 30484446 -171843901 + (CA)n Simple_repeat Simple_repeat 2 31 0 22 80 0 0 chr4 30485622 30485672 -171842675 + AT_rich Low_complexity Low_complexity 1 50 0 2234 93 0 3 chr4 30485811 30486113 -171842234 - AluY SINE Alu -10 301 1 33 0 0 0 chr4 30486226 30486259 -171842088 + AT_rich Low_complexity Low_complexity 1 33 0 564 308 98 44 chr4 30488400 30489056 -171839291 - L2 LINE L2 0 3313 2529 452 294 62 23 chr4 30490339 30490516 -171837831 - MIR SINE MIR -75 187 4 455 333 69 17 chr4 30493865 30494096 -171834251 + MIR SINE MIR 20 262 0 1118 401 39 40 chr4 30494490 30495034 -171833313 + MLT2B3 LTR ERVL 1 543 -11 2375 151 55 5 chr4 30495611 30496015 -171832332 + MER61C LTR ERV1 1 424 -10 1520 219 121 88 chr4 30496520 30497222 -171831125 - MER50 LTR ERV1 0 734 10 2184 110 0 7 chr4 30497474 30497775 -171830572 + AluSx SINE Alu 3 301 -11 23 0 0 0 chr4 30498461 30498484 -171829863 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 30500980 30501017 -171827330 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 30503163 30503185 -171825162 + AT_rich Low_complexity Low_complexity 1 22 0 201 121 0 0 chr4 30503729 30503762 -171824585 + (T)n Simple_repeat Simple_repeat 1 33 0 893 127 12 12 chr4 30503774 30503947 -171824400 + CT-rich Low_complexity Low_complexity 2 174 0 303 318 72 23 chr4 30505350 30506050 -171822297 + L1MC/D LINE L1 4738 5481 -748 28 0 0 0 chr4 30506483 30506511 -171821836 + AT_rich Low_complexity Low_complexity 1 28 0 229 219 14 55 chr4 30506620 30506693 -171821654 + GA-rich Low_complexity Low_complexity 2 71 0 1598 267 125 29 chr4 30507072 30508069 -171820278 + L1ME1 LINE L1 37 1220 -5176 2176 247 47 24 chr4 30508071 30508889 -171819458 - L1M4 LINE L1 -2159 3987 3152 2058 247 55 67 chr4 30508893 30509248 -171819099 + L1ME1 LINE L1 5189 5547 -856 2493 62 0 0 chr4 30509248 30509557 -171818790 + AluY SINE Alu 1 309 -2 2058 247 55 67 chr4 30509557 30510196 -171818151 + L1ME1 LINE L1 5547 6320 -83 843 197 86 105 chr4 30510196 30510547 -171817800 - MER2 DNA MER2_type 0 344 1 2058 247 55 67 chr4 30510547 30510630 -171817717 + L1ME1 LINE L1 6320 6403 0 4725 158 14 54 chr4 30510837 30511486 -171816861 - MER49 LTR ERV1 0 923 324 2256 109 0 3 chr4 30511486 30511789 -171816558 - AluSq SINE Alu -9 304 3 4725 158 14 54 chr4 30511789 30512097 -171816250 - MER49 LTR ERV1 -599 324 5 1686 238 3 8 chr4 30512470 30512827 -171815520 + MLT1A1 LTR MaLR 10 364 -1 21 36 0 0 chr4 30514059 30514087 -171814260 + AT_rich Low_complexity Low_complexity 1 28 0 785 282 21 116 chr4 30514638 30515251 -171813096 + L2 LINE L2 2350 2904 -410 420 291 15 58 chr4 30515537 30515743 -171812604 + L2 LINE L2 3109 3305 -8 482 207 17 35 chr4 30516106 30516222 -171812125 - MER20 DNA MER1_type -105 114 1 319 302 155 8 chr4 30517222 30517351 -171810996 - MLT1I LTR MaLR -39 370 223 401 225 36 65 chr4 30517395 30517533 -171810814 - MLT1I LTR MaLR -275 134 1 255 281 22 45 chr4 30517706 30517795 -171810552 + L2 LINE L2 3227 3313 0 1210 223 41 34 chr4 30517943 30518268 -171810079 - LTR10C LTR ERV1 -57 576 243 182 345 12 0 chr4 30518642 30518726 -171809621 + L2 LINE L2 2191 2275 -1039 233 240 136 16 chr4 30518728 30518853 -171809494 - L1MC3 LINE L1 -1142 6643 6504 290 421 8 21 chr4 30518869 30519109 -171809238 + L2 LINE L2 2424 2660 -654 36 23 0 0 chr4 30519198 30519241 -171809106 + AT_rich Low_complexity Low_complexity 1 43 0 309 51 0 0 chr4 30519374 30519413 -171808934 + (CA)n Simple_repeat Simple_repeat 2 40 0 257 337 12 10 chr4 30519646 30519767 -171808580 - MIR SINE MIR -69 139 37 202 275 121 33 chr4 30521649 30521740 -171806607 - MIR SINE MIR -80 182 84 245 311 54 0 chr4 30521979 30522053 -171806294 - L2 LINE L2 -9 3304 3227 * 330 289 96 13 chr4 30522049 30522205 -171806142 - MIR SINE MIR 0 262 94 1631 168 61 85 chr4 30522205 30522617 -171805730 - MLT2C2 LTR ERVL -62 402 1 375 328 64 0 chr4 30522617 30522742 -171805605 - MIR SINE MIR -116 146 14 186 43 0 0 chr4 30523197 30523220 -171805127 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 26 30 0 0 chr4 30523554 30523587 -171804760 + AT_rich Low_complexity Low_complexity 1 33 0 2553 55 0 0 chr4 30523850 30524158 -171804189 - AluY SINE Alu -3 308 1 228 372 8 33 chr4 30524598 30524719 -171803628 - MER5A DNA MER1_type -28 161 44 1752 133 91 26 chr4 30524918 30525270 -171803077 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr4 30526723 30526752 -171801595 + AT_rich Low_complexity Low_complexity 1 29 0 33 43 0 0 chr4 30526813 30526860 -171801487 + AT_rich Low_complexity Low_complexity 1 47 0 281 341 104 0 chr4 30527061 30527234 -171801113 + MIR SINE MIR 66 256 -6 24 32 0 0 chr4 30527630 30527661 -171800686 + AT_rich Low_complexity Low_complexity 1 31 0 1822 219 71 7 chr4 30528415 30528854 -171799493 - MLT1C LTR MaLR 0 467 1 210 37 0 0 chr4 30530151 30530178 -171798169 + (TG)n Simple_repeat Simple_repeat 2 28 0 3443 209 57 103 chr4 30530310 30531117 -171797230 - Charlie1a DNA MER1_type -1306 1455 749 1988 116 48 17 chr4 30531117 30531410 -171796937 - AluSq SINE Alu -11 302 1 3443 209 57 103 chr4 30531410 30532123 -171796224 - Charlie1a DNA MER1_type -2012 749 5 246 278 16 48 chr4 30532853 30532979 -171795368 + (TATATG)n Simple_repeat Simple_repeat 5 126 0 293 315 95 68 chr4 30533204 30533614 -171794733 - L2 LINE L2 -9 3304 2884 194 344 75 33 chr4 30533582 30533794 -171794553 - L2 LINE L2 -1357 1957 1737 * 1071 175 34 37 chr4 30533896 30534175 -171794172 + MLT1D LTR MaLR 40 354 -151 212 176 0 20 chr4 30534176 30534227 -171794120 + (ATTTG)n Simple_repeat Simple_repeat 5 54 0 611 324 115 28 chr4 30535838 30536008 -171792339 - L1MC/D LINE L1 -1991 5886 5732 351 44 0 0 chr4 30536008 30536053 -171792294 + (TG)n Simple_repeat Simple_repeat 2 46 0 611 324 115 28 chr4 30536053 30536388 -171791959 - L1MC/D LINE L1 -2145 5732 5337 358 262 124 0 chr4 30536624 30536769 -171791578 - L1MC4 LINE L1 -73 7969 7807 229 300 40 0 chr4 30537006 30537106 -171791241 - L1MC4 LINE L1 -723 7319 7216 192 182 0 0 chr4 30537117 30537161 -171791186 + (CA)n Simple_repeat Simple_repeat 1 44 0 489 287 35 11 chr4 30537236 30537410 -171790937 - L1MC4a LINE L1 -906 6902 6725 3740 144 31 0 chr4 30538314 30538920 -171789427 + MER39B LTR ERV1 1 625 -28 3078 251 53 10 chr4 30539895 30540914 -171787433 - L1MC/D LINE L1 -1665 4550 3488 436 278 12 12 chr4 30540881 30541054 -171787293 - L1M4 LINE L1 -1439 4776 4604 * 1136 263 67 14 chr4 30541162 30541671 -171786676 - L1MC/D LINE L1 -5215 1181 646 359 263 91 29 chr4 30541786 30541961 -171786386 - L1MC/D LINE L1 -6175 221 36 439 276 21 7 chr4 30542301 30542446 -171785901 + MER69 DNA AcHobo 634 780 -1746 247 223 75 21 chr4 30542452 30542546 -171785801 + MER69 DNA AcHobo 1999 2097 -429 1658 199 40 16 chr4 30542552 30542923 -171785424 + MLT1B LTR MaLR 11 390 0 1267 223 95 5 chr4 30542923 30543321 -171785026 + MER69 DNA AcHobo 2093 2526 0 214 315 0 14 chr4 30543426 30543499 -171784848 + MIR SINE MIR 149 220 -42 1567 170 21 7 chr4 30543612 30543895 -171784452 - Tigger3(Golem) DNA MER2_type -3 3026 2740 1443 216 3 7 chr4 30543895 30544177 -171784170 + AluJo SINE Alu 1 281 -31 28 0 0 0 chr4 30544181 30544209 -171784138 + AT_rich Low_complexity Low_complexity 1 28 0 453 247 0 0 chr4 30544271 30544352 -171783995 - Tigger3(Golem) DNA MER2_type -2947 82 2 1183 197 17 133 chr4 30544452 30544864 -171783483 + MLT1A1 LTR MaLR 1 364 -1 281 299 160 14 chr4 30545988 30546132 -171782215 + MIR SINE MIR 66 230 -32 422 258 219 19 chr4 30547146 30547301 -171781046 - MER5A DNA MER1_type 0 189 4 498 256 0 0 chr4 30547398 30547638 -171780709 + (CA)n Simple_repeat Simple_repeat 1 240 0 35 83 0 0 chr4 30547954 30548038 -171780309 + AT_rich Low_complexity Low_complexity 1 84 0 24 32 0 0 chr4 30548961 30548992 -171779355 + AT_rich Low_complexity Low_complexity 1 31 0 1148 83 24 0 chr4 30549382 30549550 -171778797 - L1PA13 LINE L1 0 6163 5992 1247 102 33 0 chr4 30549650 30549853 -171778494 - L1PA13 LINE L1 -178 5953 5732 547 135 0 0 chr4 30549853 30549927 -171778420 - LTR12 LTR ERV1 -19 695 622 286 206 37 56 chr4 30549927 30550035 -171778312 - LTR30 LTR ERV1 -94 613 375 1543 115 112 49 chr4 30550035 30550384 -171777963 - LTR12 LTR ERV1 -417 2021 57 253 231 0 0 chr4 30550384 30550436 -171777911 - LTR30 LTR ERV1 -670 52 1 4543 112 2 2 chr4 30550436 30551079 -171777268 - HERV9 LTR ERV1 0 8399 7757 1808 85 19 18 chr4 30551074 30551476 -171776871 - Harlequin LTR ERV1 -5176 1720 1275 * 1929 116 39 9 chr4 30551463 30551799 -171776548 - Harlequin LTR ERV1 -7577 1049 704 33802 103 19 12 chr4 30551817 30556696 -171771651 - Harlequin LTR ERV1 -3425 4974 59 688 120 56 78 chr4 30556675 30556817 -171771530 - pTR5 LTR ERV1 -1994 444 306 * 288 252 58 0 chr4 30556818 30556921 -171771426 - LTR30 LTR ERV1 -70 652 544 1497 104 105 52 chr4 30556921 30557270 -171771077 - LTR12 LTR ERV1 -437 1794 57 230 260 0 0 chr4 30557271 30557321 -171771026 - LTR30 LTR ERV1 -671 51 2 1960 185 40 32 chr4 30557323 30557869 -171770478 + MLT2A2 LTR ERVL 1 554 0 2905 103 2 2 chr4 30557869 30558285 -171770062 - L1P4 LINE L1 -407 5767 5352 21 57 0 0 chr4 30558285 30558320 -171770027 + AT_rich Low_complexity Low_complexity 1 35 0 351 0 0 0 chr4 30558509 30558548 -171769799 + (CA)n Simple_repeat Simple_repeat 1 39 0 25 51 0 0 chr4 30558742 30558781 -171769566 + AT_rich Low_complexity Low_complexity 1 39 0 1729 51 0 5 chr4 30558880 30559129 -171769218 - L1PA3 LINE L1 0 6155 5921 5763 119 6 1 chr4 30559154 30560749 -171767598 - L1PA10 LINE L1 -5 6163 4561 1296 129 0 0 chr4 30560749 30560943 -171767404 + L1P LINE L1 3556 3749 -2397 1172 224 104 31 chr4 30560932 30561347 -171767000 + L1MCa LINE L1 1465 1909 -4517 * 1260 282 28 25 chr4 30561361 30561889 -171766458 + L1MCa LINE L1 3454 3983 -2443 * 5564 182 5 9 chr4 30561886 30563000 -171765347 + L1P LINE L1 4140 5249 -897 929 182 0 0 chr4 30563004 30563185 -171765162 + L1P LINE L1 4368 4548 -1598 527 117 126 0 chr4 30563180 30563283 -171765064 - L1P LINE L1 -799 5369 5254 * 970 164 12 0 chr4 30563291 30563456 -171764891 - L1P LINE L1 -2015 4131 3965 250 299 28 47 chr4 30563759 30563866 -171764481 + L2 LINE L2 3195 3299 -14 490 204 31 31 chr4 30564223 30564385 -171763962 + L1MA7 LINE L1 6113 6274 -17 189 0 0 0 chr4 30565088 30565109 -171763238 + (TG)n Simple_repeat Simple_repeat 1 21 0 5345 221 20 20 chr4 30565132 30565620 -171762727 - L1MC1 LINE L1 -39 6574 6087 1961 140 7 0 chr4 30565620 30565928 -171762419 - AluSx SINE Alu -2 310 1 5345 221 20 20 chr4 30565928 30567900 -171760447 - L1MC1 LINE L1 -526 6087 3986 3062 193 35 80 chr4 30567904 30568713 -171759634 - L1MC1 LINE L1 -5610 816 45 255 312 43 11 chr4 30568743 30568836 -171759511 + L2 LINE L2 2697 2792 -522 31 26 0 0 chr4 30569150 30569188 -171759159 + AT_rich Low_complexity Low_complexity 1 38 0 1771 141 176 3 chr4 30569340 30569703 -171758644 + MSTA LTR MaLR 3 428 0 297 313 0 0 chr4 30570874 30570957 -171757390 + L2 LINE L2 3227 3309 -4 3440 111 4 22 chr4 30572807 30573170 -171755177 - L1PB1 LINE L1 0 7570 7202 2358 124 31 3 chr4 30573170 30573524 -171754823 - THE1B LTR MaLR 0 364 1 282 56 0 0 chr4 30573524 30573560 -171754787 + (TG)n Simple_repeat Simple_repeat 2 37 0 3440 111 4 22 chr4 30573560 30573736 -171754611 - L1PB1 LINE L1 -366 7204 7040 1958 186 87 24 chr4 30573736 30574187 -171754160 - LTR2B LTR ERV1 -11 479 1 13203 228 29 10 chr4 30574187 30576631 -171751716 - L1PB1 LINE L1 -517 7053 4656 198 0 0 0 chr4 30576631 30576653 -171751694 + (TTTAA)n Simple_repeat Simple_repeat 4 25 0 13203 228 29 10 chr4 30576653 30576666 -171751681 - L1PB1 LINE L1 -2914 4656 4645 261 0 0 0 chr4 30576666 30576695 -171751652 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 13203 228 29 10 chr4 30576695 30578448 -171749899 - L1PB1 LINE L1 -2925 4645 2373 313 83 42 0 chr4 30578448 30578496 -171749851 - LTR2B LTR ERV1 0 490 441 191 340 10 50 chr4 30578672 30578772 -171749575 - L2 LINE L2 -43 3229 3134 2109 118 0 3 chr4 30578847 30579151 -171749196 - AluSg SINE Alu -6 304 2 339 321 29 0 chr4 30579628 30579765 -171748582 + GA-rich Low_complexity Low_complexity 5 145 0 736 172 0 15 chr4 30579849 30579983 -171748364 + FLAM_C SINE Alu 2 133 0 48 53 0 0 chr4 30580203 30580279 -171748068 + AT_rich Low_complexity Low_complexity 1 76 0 963 179 0 68 chr4 30580495 30580730 -171747617 - MER20 DNA MER1_type 0 219 1 322 330 89 51 chr4 30582470 30582706 -171745641 - L3 LINE CR1 -363 1214 970 30 0 0 0 chr4 30582826 30582856 -171745491 + AT_rich Low_complexity Low_complexity 1 30 0 458 264 105 68 chr4 30583115 30583468 -171744879 - MLT1K LTR MaLR -17 571 206 898 194 12 0 chr4 30583742 30583912 -171744435 + MSTC LTR MaLR 253 424 -4 450 353 42 6 chr4 30583917 30584084 -171744263 - MER5B DNA MER1_type 0 178 6 962 233 34 0 chr4 30584328 30584534 -171743813 + MLT1A1 LTR MaLR 115 327 -38 214 374 10 0 chr4 30586000 30586099 -171742248 - L2 LINE L2 -559 2755 2656 27 73 0 0 chr4 30586169 30586224 -171742123 + AT_rich Low_complexity Low_complexity 1 55 0 31 26 0 0 chr4 30586321 30586359 -171741988 + AT_rich Low_complexity Low_complexity 1 38 0 1116 96 6 6 chr4 30586999 30587155 -171741192 + AluSg SINE Alu 1 156 -154 1674 202 19 46 chr4 30587278 30587645 -171740702 - MER67D LTR ERV1 -157 357 1 329 277 31 23 chr4 30587684 30587814 -171740533 + L1 LINE L1 3651 3781 -2365 266 259 17 0 chr4 30587934 30587992 -171740355 - MIR SINE MIR -155 107 49 324 0 0 0 chr4 30588187 30588223 -171740124 + (TG)n Simple_repeat Simple_repeat 2 37 0 392 322 59 0 chr4 30588324 30588476 -171739871 + L3 LINE CR1 1261 1421 -156 481 245 54 38 chr4 30589003 30589187 -171739160 - LTR33 LTR ERVL 0 521 335 234 172 207 0 chr4 30589289 30589376 -171738971 - MER53 DNA DNA -82 107 3 472 225 87 11 chr4 30589415 30589633 -171738714 - MER5C DNA MER1_type -37 287 4 258 198 83 42 chr4 30589693 30589789 -171738558 - LTR33 LTR ERVL -306 215 116 248 383 21 28 chr4 30590788 30590929 -171737418 - MER5A DNA MER1_type -1 188 49 2018 107 31 17 chr4 30591288 30591578 -171736769 - AluSg SINE Alu -16 294 1 328 318 81 31 chr4 30592382 30592605 -171735742 + MIR SINE MIR 1 234 -28 3472 210 8 47 chr4 30593251 30594172 -171734175 - L1 LINE L1 -1169 4977 4093 * 4440 193 15 20 chr4 30594169 30595390 -171732957 + L1PB4 LINE L1 4939 6156 0 224 167 21 0 chr4 30596186 30596234 -171732113 + (TAAG)n Simple_repeat Simple_repeat 3 51 0 335 315 161 7 chr4 30596709 30596858 -171731489 - L2 LINE L2 -762 2552 2381 515 327 43 43 chr4 30596921 30597248 -171731099 - L2 LINE L2 -1151 2163 1837 1142 321 97 54 chr4 30597798 30598752 -171729595 + L2 LINE L2 319 1336 -1978 3132 108 18 0 chr4 30598752 30599197 -171729150 - MLT2A2 LTR ERVL 0 453 1 1142 321 97 54 chr4 30599197 30599455 -171728892 + L2 LINE L2 1336 1582 -1732 442 360 222 21 chr4 30600031 30600964 -171727383 + L2 LINE L2 1855 2974 -340 500 344 45 29 chr4 30601033 30601411 -171726936 - L1MEc LINE L1 -5974 422 39 255 152 0 0 chr4 30601938 30601984 -171726363 + (TG)n Simple_repeat Simple_repeat 2 47 0 2064 115 44 0 chr4 30603087 30603383 -171724964 + AluSx SINE Alu 1 309 -3 551 333 76 55 chr4 30604960 30605647 -171722700 - L1 LINE L1 -2961 3185 2485 369 322 148 22 chr4 30605708 30605978 -171722369 - L2 LINE L2 -469 2845 2542 22 0 0 0 chr4 30606568 30606590 -171721757 + AT_rich Low_complexity Low_complexity 1 22 0 259 244 67 104 chr4 30606610 30606774 -171721573 - MIR SINE MIR 0 262 105 537 58 0 0 chr4 30606864 30606933 -171721414 + (TTCC)n Simple_repeat Simple_repeat 2 70 0 566 201 151 25 chr4 30606933 30607092 -171721255 - AluJb SINE Alu -29 283 105 299 155 17 0 chr4 30607181 30607239 -171721108 + AluJb SINE Alu 69 127 -175 333 214 0 2 chr4 30607251 30607315 -171721032 - AluS SINE Alu -245 58 2 21 0 0 0 chr4 30607401 30607422 -171720925 + AT_rich Low_complexity Low_complexity 1 21 0 1037 318 46 51 chr4 30607773 30608464 -171719883 - HERVL LTR ERVL -1042 3954 3335 260 246 15 0 chr4 30608680 30608745 -171719602 - MLT1E2 LTR MaLR -2 624 559 409 135 0 0 chr4 30608751 30608825 -171719522 - L1MA4A LINE L1 -4 6299 6226 321 238 8 127 chr4 30608996 30609122 -171719225 - MLT1D-int LTR MaLR -710 661 551 470 99 0 0 chr4 30609122 30609193 -171719154 - Alu SINE Alu 0 310 240 1797 288 5 14 chr4 30609193 30609519 -171718828 - MLT1D-int LTR MaLR -817 554 234 1164 207 94 22 chr4 30609519 30609838 -171718509 + MER2 DNA MER2_type 3 344 0 1797 288 5 14 chr4 30609838 30610070 -171718277 - MLT1D-int LTR MaLR -1137 234 1 1297 267 50 40 chr4 30610075 30610570 -171717777 - MLT1D LTR MaLR -4 501 2 822 148 5 0 chr4 30610674 30610815 -171717532 + THE1C LTR MaLR 242 375 0 * 1803 194 3 22 chr4 30610815 30611170 -171717177 + MLT1B LTR MaLR 43 390 0 2358 101 0 3 chr4 30611394 30611701 -171716646 + AluSg SINE Alu 1 306 -4 180 0 0 0 chr4 30611702 30611722 -171716625 + (TA)n Simple_repeat Simple_repeat 1 20 0 25 0 0 0 chr4 30613005 30613030 -171715317 + AT_rich Low_complexity Low_complexity 1 25 0 1859 312 82 54 chr4 30614361 30615332 -171713015 - L2 LINE L2 -339 2975 1977 1114 194 237 48 chr4 30615346 30615495 -171712852 + L1MC3 LINE L1 7307 7427 -358 1927 121 4 0 chr4 30615495 30615760 -171712587 + AluSx SINE Alu 1 266 -46 1114 194 237 48 chr4 30615760 30615838 -171712509 + L1MC3 LINE L1 7427 7489 -296 2030 66 52 22 chr4 30615838 30616142 -171712205 + AluY SINE Alu 1 312 0 1114 194 237 48 chr4 30616142 30616309 -171712038 + L1MC3 LINE L1 7489 7778 -7 238 298 50 14 chr4 30616576 30616717 -171711630 - MLT1I LTR MaLR -35 374 229 2340 148 46 19 chr4 30616948 30617360 -171710987 + MSTA LTR MaLR 4 426 -2 336 294 72 7 chr4 30617774 30617927 -171710420 + L1M4c LINE L1 848 1010 -5374 313 271 24 0 chr4 30617945 30618030 -171710317 - L1MEd LINE L1 -5107 1098 1012 509 287 54 40 chr4 30618130 30618426 -171709921 + L1ME3A LINE L1 5866 6165 -5 1671 209 3 0 chr4 30618625 30618982 -171709365 - AluJo SINE Alu 0 360 3 373 291 90 26 chr4 30619009 30619393 -171708954 - L1MEd LINE L1 -4880 1335 902 340 263 46 84 chr4 30619408 30619670 -171708677 - L1MEd LINE L1 -5290 915 664 449 363 15 15 chr4 30620004 30620277 -171708070 - L1MEd LINE L1 -6011 385 113 201 108 0 0 chr4 30620578 30620615 -171707732 + (ATG)n Simple_repeat Simple_repeat 3 39 0 320 333 97 28 chr4 30620647 30620791 -171707556 - MIR SINE MIR -49 213 60 2267 69 0 10 chr4 30621059 30621347 -171707000 + AluY SINE Alu 13 297 -14 23 0 0 0 chr4 30621363 30621386 -171706961 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 30622595 30622632 -171705715 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 30622823 30622858 -171705489 + AT_rich Low_complexity Low_complexity 1 35 0 196 299 104 0 chr4 30623009 30623076 -171705271 + L3 LINE CR1 390 463 -1114 3609 152 67 57 chr4 30623472 30624249 -171704098 - LTR1 LTR ERV1 0 785 1 779 126 5 126 chr4 30624961 30625168 -171703179 + MER53 DNA DNA 8 189 0 401 301 26 20 chr4 30625170 30625323 -171703024 - MIR SINE MIR -47 215 62 422 78 0 0 chr4 30625522 30625586 -171702761 - Alu SINE Alu -3 308 245 1080 45 0 15 chr4 30625590 30625724 -171702623 - AluY SINE Alu -179 132 1 206 345 71 24 chr4 30625764 30625932 -171702415 + L2 LINE L2 2691 2866 -448 2425 212 16 43 chr4 30626140 30626787 -171701560 - L1MA8 LINE L1 -870 5276 4648 4606 159 19 21 chr4 30626801 30626990 -171701357 + L1MA8 LINE L1 5254 5442 -849 1939 149 0 0 chr4 30626990 30627266 -171701081 + AluSx SINE Alu 1 276 -36 306 0 0 0 chr4 30627273 30627307 -171701040 + (CA)n Simple_repeat Simple_repeat 2 35 0 4606 159 19 21 chr4 30627307 30627966 -171700381 + L1MA8 LINE L1 5448 6108 -183 * 14315 92 6 1 chr4 30627964 30629907 -171698440 + L1PA5 LINE L1 55 2008 -4138 7575 89 6 21 chr4 30629909 30630996 -171697351 - MER11C LTR ERVK 0 1071 1 21307 56 0 1 chr4 30630996 30634526 -171693821 + L1PA5 LINE L1 2599 6148 -6 621 136 131 28 chr4 30634526 30634702 -171693645 + L1MA7 LINE L1 6092 6285 -6 27 49 0 0 chr4 30635282 30635323 -171693024 + AT_rich Low_complexity Low_complexity 1 41 0 187 182 0 36 chr4 30635589 30635644 -171692703 + CT-rich Low_complexity Low_complexity 2 54 0 2233 108 0 3 chr4 30635749 30636046 -171692301 - AluSx SINE Alu -16 296 1 32 43 0 0 chr4 30636329 30636375 -171691972 + AT_rich Low_complexity Low_complexity 1 46 0 225 378 18 9 chr4 30636565 30636676 -171691671 - MIR3 SINE MIR -46 162 51 254 260 0 0 chr4 30636885 30636935 -171691412 + MER21B LTR ERV1 47 96 -767 2038 122 0 38 chr4 30636964 30637284 -171691063 - AluSx SINE Alu -4 308 1 917 294 76 35 chr4 30637298 30637877 -171690470 + MER21B LTR ERV1 100 756 -107 1875 152 25 0 chr4 30637915 30638191 -171690156 + AluSx SINE Alu 1 283 -29 285 29 0 0 chr4 30638191 30638225 -171690122 + (CA)n Simple_repeat Simple_repeat 2 35 0 445 250 18 36 chr4 30638302 30638470 -171689877 + (TA)n Simple_repeat Simple_repeat 2 166 0 419 200 0 0 chr4 30638504 30638594 -171689753 + MER53 DNA DNA 100 189 0 262 343 65 57 chr4 30639357 30639456 -171688891 - MIR SINE MIR -7 255 158 1429 195 29 49 chr4 30639456 30639800 -171688547 - MER1B DNA MER1_type 0 337 1 262 343 65 57 chr4 30639800 30639948 -171688399 - MIR SINE MIR -104 158 6 26 50 0 0 chr4 30640278 30640318 -171688029 + AT_rich Low_complexity Low_complexity 1 40 0 256 236 34 45 chr4 30640564 30640653 -171687694 - MIR SINE MIR 0 262 175 569 279 20 0 chr4 30641502 30641649 -171686698 + MER4A-int LTR ERV1 1951 2100 -4231 610 229 45 76 chr4 30641663 30642085 -171686262 + MER4A-int LTR ERV1 1356 3129 -263 2088 169 84 22 chr4 30642438 30642622 -171685725 - MSTA LTR MaLR 0 428 257 2524 111 3 31 chr4 30642622 30642843 -171685504 - THE1C LTR MaLR 0 375 168 2202 113 3 0 chr4 30642843 30643136 -171685211 + AluSg SINE Alu 1 294 -16 2524 111 3 31 chr4 30643136 30643300 -171685047 - THE1C LTR MaLR -207 168 1 2088 169 84 22 chr4 30643300 30643518 -171684829 - MSTA LTR MaLR -171 257 1 1366 209 77 93 chr4 30643522 30644573 -171683774 + MER4A-int LTR ERV1 2099 3620 -1395 2337 212 42 14 chr4 30644583 30645046 -171683301 + L1 LINE L1 4682 5130 -1036 1890 112 11 0 chr4 30645046 30645315 -171683032 + AluY SINE Alu 37 308 -3 2337 212 42 14 chr4 30645315 30645566 -171682781 + L1 LINE L1 5130 5419 -747 4066 143 26 0 chr4 30645566 30646229 -171682118 + L1PA16 LINE L1 5487 6166 0 310 255 11 0 chr4 30646236 30646330 -171682017 + (TA)n Simple_repeat Simple_repeat 1 95 0 7542 165 22 1 chr4 30646424 30647751 -171680596 - Tigger1 DNA MER2_type -4 2414 1060 4978 193 28 16 chr4 30647754 30649781 -171678566 - L1MA4A LINE L1 0 7365 5316 5755 226 28 48 chr4 30649882 30651740 -171676607 - L1MA4A LINE L1 -2214 4994 3176 369 0 0 0 chr4 30651771 30651812 -171676535 + (TC)n Simple_repeat Simple_repeat 2 42 0 * 372 103 0 0 chr4 30651811 30651869 -171676478 + (TA)n Simple_repeat Simple_repeat 1 58 0 4725 207 35 176 chr4 30651869 30654242 -171674105 - L1MA4A LINE L1 -4809 2400 1 552 104 198 0 chr4 30654248 30654354 -171673993 - Tigger1 DNA MER2_type -1344 1074 948 * 4378 165 34 8 chr4 30654348 30655116 -171673231 - Tigger1 DNA MER2_type -1630 788 1 5595 219 48 43 chr4 30655119 30656852 -171671495 + MER4A-int LTR ERV1 4589 6330 -1 1880 113 9 48 chr4 30656941 30657276 -171671071 + MER4A LTR ERV1 37 358 -306 2145 126 3 3 chr4 30657313 30657623 -171670724 + MER4A LTR ERV1 355 664 0 546 168 0 37 chr4 30657627 30657734 -171670613 + LTR49 LTR ERV1 39 141 -454 452 143 26 13 chr4 30657757 30657830 -171670517 + MER84 LTR ERVI 1 74 -433 1773 146 71 7 chr4 30657830 30658139 -171670208 + MER84 LTR ERVI 2 330 -177 187 151 0 57 chr4 30659721 30659774 -171668573 + GA-rich Low_complexity Low_complexity 5 54 0 180 0 0 0 chr4 30660011 30660031 -171668316 + (TAA)n Simple_repeat Simple_repeat 1 20 0 1060 224 35 52 chr4 30660517 30660861 -171667486 + MER58B DNA MER1_type 1 338 -3 309 381 12 6 chr4 30660898 30661066 -171667281 + L2 LINE L2 2619 2787 -527 480 35 0 0 chr4 30661194 30661252 -171667095 + (A)n Simple_repeat Simple_repeat 1 58 0 180 0 0 0 chr4 30661668 30661688 -171666659 + (TAA)n Simple_repeat Simple_repeat 1 20 0 1060 224 35 52 chr4 30662174 30662518 -171665829 + MER58B DNA MER1_type 1 338 -3 309 381 12 6 chr4 30662555 30662723 -171665624 + L2 LINE L2 2619 2787 -527 318 106 0 0 chr4 30662851 30662898 -171665449 + (A)n Simple_repeat Simple_repeat 1 47 0 216 331 153 25 chr4 30663231 30663388 -171664959 - L2 LINE L2 -189 3083 2907 452 215 90 123 chr4 30663403 30663639 -171664708 - LTR48 LTR ERV1 -30 757 515 1825 143 42 68 chr4 30663639 30664024 -171664323 - THE1C LTR MaLR 0 375 1 452 215 90 123 chr4 30664024 30664215 -171664132 - LTR48 LTR ERV1 -272 515 157 766 167 71 54 chr4 30664223 30664391 -171663956 - MER84 LTR ERVI -9 498 328 296 95 0 0 chr4 30664408 30664450 -171663897 + MADE1 DNA Mariner 1 42 -38 271 358 142 4 chr4 30664813 30665073 -171663274 + L2 LINE L2 2420 2715 -599 1357 67 0 0 chr4 30665080 30665260 -171663087 + L1PA13 LINE L1 5984 6163 0 198 292 0 15 chr4 30665740 30665805 -171662542 + L2 LINE L2 3248 3311 -2 267 243 0 72 chr4 30667442 30667553 -171660794 + HAL1 LINE L1 95 197 -2310 460 336 141 46 chr4 30667683 30668115 -171660232 + HAL1 LINE L1 446 918 -1589 277 258 90 69 chr4 30668162 30668303 -171660044 + HAL1 LINE L1 897 1034 -1473 1785 160 0 55 chr4 30668303 30668606 -171659741 + AluSx SINE Alu 1 286 -26 390 21 0 0 chr4 30668606 30668653 -171659694 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1785 160 0 55 chr4 30668653 30668674 -171659673 + AluSx SINE Alu 286 307 -5 277 258 90 69 chr4 30668674 30669012 -171659335 + HAL1 LINE L1 1034 1386 -1121 416 320 56 32 chr4 30669165 30669415 -171658932 + HAL1 LINE L1 1627 1882 -625 2548 171 18 134 chr4 30669475 30670126 -171658221 - MER70B LTR ERVL -2 576 1 546 298 0 7 chr4 30670227 30670368 -171657979 - MIR SINE MIR -105 157 18 257 279 81 35 chr4 30670365 30670517 -171657830 + MIR SINE MIR 5 161 -68 * 330 331 100 25 chr4 30673431 30673591 -171654756 + MIR SINE MIR 2 173 -89 237 316 86 0 chr4 30673712 30673829 -171654518 - MIR SINE MIR -79 183 57 2265 128 0 0 chr4 30674216 30674529 -171653818 - AluSq SINE Alu 0 313 1 30 45 0 0 chr4 30674997 30675041 -171653306 + AT_rich Low_complexity Low_complexity 1 44 0 191 36 36 0 chr4 30675598 30675626 -171652721 + (CA)n Simple_repeat Simple_repeat 2 30 0 473 111 0 0 chr4 30675907 30675979 -171652368 + AluS SINE Alu 1 72 -239 1965 114 72 7 chr4 30675979 30676286 -171652061 - L1PA11 LINE L1 -101 6073 5747 243 181 0 133 chr4 30676256 30676339 -171652008 - L1P LINE L1 -2887 3259 3188 * 5672 120 15 2 chr4 30676360 30677235 -171651112 - L1PB1 LINE L1 -1 6150 5265 * 8467 184 31 26 chr4 30677218 30678566 -171649781 - L1P LINE L1 -2950 3196 1835 1914 154 4 0 chr4 30678566 30678875 -171649472 + AluSx SINE Alu 1 310 0 8467 184 31 26 chr4 30678875 30679423 -171648924 - L1P LINE L1 -4311 1835 1291 1531 287 91 90 chr4 30679509 30680523 -171647824 + L2 LINE L2 2013 3004 -268 864 287 184 29 chr4 30680588 30681034 -171647313 + LTR41 LTR ERVL 29 543 -230 26 0 0 0 chr4 30681134 30681160 -171647187 + AT_rich Low_complexity Low_complexity 1 26 0 24 67 0 0 chr4 30681448 30681493 -171646854 + AT_rich Low_complexity Low_complexity 1 45 0 189 0 0 0 chr4 30681669 30681690 -171646657 + (T)n Simple_repeat Simple_repeat 1 21 0 1750 217 8 2 chr4 30682601 30683018 -171645329 + MLT2B1 LTR ERVL 1 470 -50 328 64 0 0 chr4 30683018 30683065 -171645282 + MADE1 DNA Mariner 1 47 -33 329 161 0 0 chr4 30683101 30683157 -171645190 + MLT2B1 LTR ERVL 460 515 0 231 100 0 0 chr4 30683673 30683713 -171644634 + L1MA3 LINE L1 6266 6305 0 23 0 0 0 chr4 30683714 30683737 -171644610 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 30683861 30683882 -171644465 + AT_rich Low_complexity Low_complexity 1 21 0 215 415 67 12 chr4 30684892 30685056 -171643291 - MIR SINE MIR -70 192 20 340 295 45 27 chr4 30685436 30685548 -171642799 - MIR SINE MIR -60 148 35 233 408 44 64 chr4 30686559 30686966 -171641381 - L2 LINE L2 -7 3265 2867 708 245 42 0 chr4 30687115 30687327 -171641020 - MER33 DNA MER1_type -102 222 2 53 90 0 0 chr4 30687468 30687612 -171640735 + AT_rich Low_complexity Low_complexity 1 144 0 4315 185 32 56 chr4 30687926 30689403 -171638944 + L1MA9 LINE L1 4280 5694 -618 1811 98 0 23 chr4 30689403 30689668 -171638679 + AluY SINE Alu 19 277 -34 4315 185 32 56 chr4 30689668 30690273 -171638074 + L1MA9 LINE L1 5694 6312 0 267 225 0 0 chr4 30690320 30690391 -171637956 + (TA)n Simple_repeat Simple_repeat 2 72 0 2215 97 0 17 chr4 30690391 30690691 -171637656 - AluSx SINE Alu -17 295 1 25 51 0 0 chr4 30690692 30690731 -171637616 + AT_rich Low_complexity Low_complexity 1 39 0 863 178 17 56 chr4 30691369 30691549 -171636798 - FRAM SINE Alu -4 172 1 195 368 16 40 chr4 30691554 30691679 -171636668 - MIR SINE MIR -121 141 20 21 0 0 0 chr4 30691730 30691751 -171636596 + AT_rich Low_complexity Low_complexity 1 21 0 209 267 44 33 chr4 30691790 30691880 -171636467 - L2 LINE L2 -790 2524 2434 189 107 0 0 chr4 30693001 30693029 -171635318 + (GA)n Simple_repeat Simple_repeat 2 29 0 447 19 0 0 chr4 30693033 30693085 -171635262 + (TG)n Simple_repeat Simple_repeat 1 52 0 598 345 110 19 chr4 30694014 30694569 -171633778 - L2 LINE L2 -34 3279 2671 2133 149 13 13 chr4 30694571 30694946 -171633401 + THE1C LTR MaLR 1 375 0 8311 137 16 36 chr4 30694946 30696323 -171632024 + THE1C-int LTR MaLR 1 1349 -231 261 0 0 0 chr4 30696779 30696808 -171631539 + (T)n Simple_repeat Simple_repeat 1 29 0 236 362 29 0 chr4 30698791 30698896 -171629451 + L2 LINE L2 3206 3313 0 1023 233 34 90 chr4 30699002 30699359 -171628988 + MLT1D LTR MaLR 1 337 -168 1514 168 8 19 chr4 30699641 30699903 -171628444 + AluJo SINE Alu 36 294 -18 329 217 26 43 chr4 30699953 30700068 -171628279 - ORSL DNA AcHobo -160 115 3 205 375 55 16 chr4 30701365 30701493 -171626854 + MIR SINE MIR 57 189 -73 2166 99 20 0 chr4 30701998 30702290 -171626057 + AluSq SINE Alu 1 298 -15 460 216 9 35 chr4 30702824 30702940 -171625407 - L2 LINE L2 -18 3295 3183 248 65 0 0 chr4 30703641 30703672 -171624675 - MLT2B1 LTR ERVL -4 511 481 432 0 0 0 chr4 30703674 30703722 -171624625 + (TG)n Simple_repeat Simple_repeat 2 49 0 1327 220 39 65 chr4 30703784 30704197 -171624150 - MLT2B1 LTR ERVL -116 404 3 202 135 27 0 chr4 30704422 30704459 -171623888 + CT-rich Low_complexity Low_complexity 4 41 0 625 65 0 0 chr4 30705112 30705204 -171623143 + Alu SINE Alu 221 312 0 207 343 0 0 chr4 30705262 30705332 -171623015 + L2 LINE L2 3203 3272 0 2143 110 0 0 chr4 30705373 30705663 -171622684 - AluSq SINE Alu -18 295 6 322 353 0 30 chr4 30707913 30708046 -171620301 - MIR SINE MIR -114 148 20 1958 183 17 6 chr4 30708606 30708967 -171619380 + MLT1A1 LTR MaLR 1 365 0 194 322 22 44 chr4 30709121 30709211 -171619136 - L2 LINE L2 -48 3265 3178 705 256 0 0 chr4 30709384 30709540 -171618807 + FRAM SINE Alu 1 156 -10 273 341 209 5 chr4 30709810 30710021 -171618326 + MLT1G1 LTR MaLR 1 254 -341 587 211 91 15 chr4 30710136 30710327 -171618020 + MLT1G1 LTR MaLR 303 595 0 222 105 0 0 chr4 30710450 30710488 -171617859 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr4 30710686 30710714 -171617633 + AT_rich Low_complexity Low_complexity 1 28 0 4333 170 22 34 chr4 30710720 30712148 -171616199 - L1MA7 LINE L1 -13 6278 4777 5297 199 38 3 chr4 30713098 30714292 -171614055 - L1MC1 LINE L1 0 6333 5101 453 296 37 46 chr4 30714436 30714652 -171613695 - MIR SINE MIR -1 261 48 180 289 39 0 chr4 30715505 30715557 -171612790 - L2 LINE L2 -16 3297 3244 24 67 0 0 chr4 30715741 30715786 -171612561 + AT_rich Low_complexity Low_complexity 1 45 0 973 127 34 19 chr4 30715896 30716101 -171612246 - L1MA7 LINE L1 0 6291 6084 25 75 0 0 chr4 30716802 30716855 -171611492 + AT_rich Low_complexity Low_complexity 1 53 0 6594 99 8 5 chr4 30716915 30719857 -171608490 + L1PA8 LINE L1 3177 6172 0 519 183 6 85 chr4 30719960 30720124 -171608223 + L1MA1 LINE L1 6048 6198 -104 27 0 0 0 chr4 30720188 30720215 -171608132 + AT_rich Low_complexity Low_complexity 1 27 0 1992 143 29 35 chr4 30720689 30721066 -171607281 + THE1C LTR MaLR 1 375 0 5216 160 56 7 chr4 30721094 30721987 -171606360 + THE1C-int LTR MaLR 17 953 -627 7287 175 9 39 chr4 30721991 30723391 -171604956 - MSTA-int LTR MaLR -220 1360 3 1437 196 139 18 chr4 30723393 30723775 -171604572 - MSTA LTR MaLR 0 428 1 401 153 14 0 chr4 30723775 30723847 -171604500 + L1PA15 LINE L1 6086 6158 -7 718 251 22 56 chr4 30723861 30724200 -171604147 + L1ME2 LINE L1 5255 5609 -553 1286 192 36 126 chr4 30724200 30724482 -171603865 - MER39 LTR ERV1 0 707 401 2107 115 0 0 chr4 30724482 30724769 -171603578 - AluSq SINE Alu -26 287 1 1286 192 36 126 chr4 30724769 30725057 -171603290 - MER39 LTR ERV1 -306 401 1 1248 279 41 24 chr4 30725061 30725595 -171602752 + L1ME2 LINE L1 5611 6153 -11 634 324 112 41 chr4 30726263 30726674 -171601673 + L2 LINE L2 2874 3313 0 1896 109 138 3 chr4 30726756 30727076 -171601271 - THE1B LTR MaLR 0 364 2 235 378 79 6 chr4 30727246 30727410 -171600937 - MIR SINE MIR -7 255 80 517 295 14 0 chr4 30727439 30727578 -171600769 + MER63A DNA MER1_type 42 182 -28 2929 252 49 36 chr4 30730019 30730805 -171597542 + L1MC3 LINE L1 3919 4119 -2027 2404 135 5 11 chr4 30730805 30731182 -171597165 - THE1C LTR MaLR 0 375 1 2929 252 49 36 chr4 30731182 30732484 -171595863 + L1MC3 LINE L1 4119 5403 -743 3910 211 77 43 chr4 30732487 30733443 -171594904 + L1MC3 LINE L1 6620 7622 -163 1933 131 3 0 chr4 30733443 30733733 -171594614 + AluSq SINE Alu 2 292 -21 3910 211 77 43 chr4 30733733 30733903 -171594444 + L1MC3 LINE L1 7622 7785 0 926 116 11 28 chr4 30734039 30734220 -171594127 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 1681 190 0 7 chr4 30734226 30734526 -171593821 - AluJb SINE Alu -2 310 13 348 299 0 28 chr4 30734585 30734692 -171593655 + GA-rich Low_complexity Low_complexity 1 104 0 21 0 0 0 chr4 30735840 30735861 -171592486 + AT_rich Low_complexity Low_complexity 1 21 0 1913 152 3 3 chr4 30735864 30736173 -171592174 + AluSx SINE Alu 1 309 -3 473 45 0 0 chr4 30736862 30736929 -171591418 - AluY SINE Alu 0 310 244 9853 37 3 158 chr4 30738688 30740329 -171588018 - SVA Other Other 0 1386 1 400 351 63 19 chr4 30740397 30740602 -171587745 - MIR SINE MIR -2 260 47 205 289 118 67 chr4 30740698 30740833 -171587514 - MIR3 SINE MIR -24 184 43 21 57 0 0 chr4 30741946 30741981 -171586366 + AT_rich Low_complexity Low_complexity 1 35 0 216 86 0 0 chr4 30742456 30742491 -171585856 + (T)n Simple_repeat Simple_repeat 1 35 0 1975 80 8 4 chr4 30742541 30742805 -171585542 + AluSp SINE Alu 39 303 -10 191 315 0 0 chr4 30742833 30742887 -171585460 + L2 LINE L2 3259 3312 -1 716 314 73 16 chr4 30743665 30744106 -171584241 - MLT1G1 LTR MaLR -36 559 75 315 283 89 50 chr4 30744149 30744329 -171584018 + MLT1L LTR MaLR 357 543 -72 819 259 21 43 chr4 30744374 30744656 -171583691 - MER93b LTR ERV1 0 373 98 389 20 0 20 chr4 30745456 30745507 -171582840 + (TTCC)n Simple_repeat Simple_repeat 2 51 0 207 186 0 0 chr4 30745510 30745553 -171582794 + CT-rich Low_complexity Low_complexity 1 43 0 208 111 44 0 chr4 30746292 30746337 -171582010 + CT-rich Low_complexity Low_complexity 1 47 0 256 283 40 10 chr4 30746389 30746488 -171581859 + MIR3 SINE MIR 85 186 -22 355 294 123 0 chr4 30748473 30748619 -171579728 + MIR SINE MIR 20 183 -79 554 253 152 17 chr4 30748930 30749167 -171579180 + MER5C DNA MER1_type 56 324 0 7674 25 0 0 chr4 30749614 30750679 -171577668 + L1PA3 LINE L1 5095 6155 0 1503 292 88 59 chr4 30751118 30752252 -171576095 + L2 LINE L2 2046 3297 -16 28 0 0 0 chr4 30752730 30752758 -171575589 + AT_rich Low_complexity Low_complexity 1 28 0 275 296 163 0 chr4 30753214 30753312 -171575035 - MIR SINE MIR -75 187 74 1780 156 21 12 chr4 30753588 30753927 -171574420 - L1MA3 LINE L1 0 6305 5964 451 243 85 32 chr4 30753974 30754043 -171574304 - L1ME3A LINE L1 -230 5940 5876 2535 67 6 0 chr4 30754043 30754374 -171573973 + L1PA7 LINE L1 5819 6151 -3 451 243 85 32 chr4 30754374 30754551 -171573796 - L1ME3A LINE L1 -294 5876 5681 22 80 0 0 chr4 30755714 30755764 -171572583 + AT_rich Low_complexity Low_complexity 1 50 0 1812 213 178 0 chr4 30756066 30756493 -171571854 + MLT1D LTR MaLR 1 503 -2 277 266 63 38 chr4 30756497 30756576 -171571771 - L2 LINE L2 -33 3280 3200 215 283 222 33 chr4 30756557 30756737 -171571610 - MIR SINE MIR -32 230 17 * 23 68 0 0 chr4 30756939 30756983 -171571364 + AT_rich Low_complexity Low_complexity 1 44 0 2407 59 0 7 chr4 30757706 30758011 -171570336 - AluY SINE Alu -8 303 1 761 130 0 0 chr4 30758044 30758159 -171570188 - L1PB3 LINE L1 0 6154 6040 23 86 0 0 chr4 30758557 30758615 -171569732 + AT_rich Low_complexity Low_complexity 1 58 0 522 81 23 0 chr4 30758921 30759007 -171569340 + L1PB1 LINE L1 6059 6146 -5 986 167 39 56 chr4 30759038 30759159 -171569188 + MSTA LTR MaLR 67 184 -244 1799 175 0 28 chr4 30759159 30759479 -171568868 + AluJb SINE Alu 1 311 -1 986 167 39 56 chr4 30759479 30759590 -171568757 + MSTA LTR MaLR 184 295 -133 1934 126 7 0 chr4 30760115 30760413 -171567934 - AluSx SINE Alu 0 303 4 225 164 55 18 chr4 30761032 30761087 -171567260 - MER82 DNA MER2_type -430 223 167 201 74 0 0 chr4 30761512 30761539 -171566808 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 897 221 10 36 chr4 30763132 30763327 -171565020 - AluJb SINE Alu -20 292 103 206 310 0 0 chr4 30763881 30763939 -171564408 + A-rich Low_complexity Low_complexity 2 59 0 188 246 246 0 chr4 30764212 30764273 -171564074 + L2 LINE L2 1052 1127 -2187 247 339 58 58 chr4 30764410 30764667 -171563680 + L2 LINE L2 1390 1646 -1668 716 109 36 7 chr4 30764667 30764805 -171563542 + CT-rich Low_complexity Low_complexity 4 145 0 1447 182 54 20 chr4 30764807 30765103 -171563244 - AluJo SINE Alu -6 306 1 259 307 9 26 chr4 30765115 30765229 -171563118 + L2 LINE L2 1611 1722 -1592 775 268 31 65 chr4 30765343 30765820 -171562527 + L1MEc LINE L1 1258 1718 -4678 230 286 140 12 chr4 30765843 30766014 -171562333 - L1ME LINE L1 -5145 1977 1785 242 236 0 14 chr4 30766023 30766095 -171562252 + (TA)n Simple_repeat Simple_repeat 2 72 0 359 291 79 26 chr4 30766106 30766317 -171562030 - L1ME LINE L1 -4876 1708 1322 560 290 53 60 chr4 30766630 30767065 -171561282 - L1ME LINE L1 -5972 451 20 21 0 0 0 chr4 30767787 30767808 -171560539 + AT_rich Low_complexity Low_complexity 1 21 0 199 373 25 54 chr4 30770345 30770549 -171557798 + L2 LINE L2 2259 2456 -858 755 239 48 43 chr4 30770550 30770759 -171557588 - MER63A DNA MER1_type 0 210 1 210 128 85 0 chr4 30771020 30771067 -171557280 + (TTATA)n Simple_repeat Simple_repeat 1 51 0 21 0 0 0 chr4 30771411 30771432 -171556915 + AT_rich Low_complexity Low_complexity 1 21 0 458 309 58 39 chr4 30771961 30772168 -171556179 - MIR SINE MIR -41 221 11 202 89 67 0 chr4 30773023 30773068 -171555279 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 207 0 0 0 chr4 30774609 30774632 -171553715 + (CA)n Simple_repeat Simple_repeat 2 24 0 25 51 0 0 chr4 30775213 30775252 -171553095 + AT_rich Low_complexity Low_complexity 1 39 0 4119 199 35 0 chr4 30775335 30776195 -171552152 - L1MC1 LINE L1 0 6333 5444 1472 205 16 70 chr4 30776674 30777060 -171551287 + MLT1A1 LTR MaLR 1 365 0 25 0 0 0 chr4 30777251 30777276 -171551071 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr4 30777636 30777674 -171550673 + AT_rich Low_complexity Low_complexity 1 38 0 242 154 0 31 chr4 30777945 30778010 -171550337 + (AATAG)n Simple_repeat Simple_repeat 4 66 0 704 296 62 101 chr4 30778093 30778294 -171550053 - LTR16A LTR ERVL -4 446 239 1923 160 10 44 chr4 30778294 30778682 -171549665 - THE1C LTR MaLR 0 375 1 704 296 62 101 chr4 30778682 30778916 -171549431 - LTR16A LTR ERVL -211 239 28 527 207 53 147 chr4 30778985 30779415 -171548932 + MLT1B LTR MaLR 1 390 0 24 0 0 0 chr4 30779566 30779590 -171548757 + AT_rich Low_complexity Low_complexity 1 24 0 279 294 12 0 chr4 30779845 30779930 -171548417 + GA-rich Low_complexity Low_complexity 2 87 0 494 312 0 0 chr4 30781394 30781519 -171546828 + L2 LINE L2 3187 3311 -2 2152 107 3 0 chr4 30781563 30781854 -171546493 + AluSp SINE Alu 7 298 -15 224 306 0 0 chr4 30782899 30782971 -171545376 + A-rich Low_complexity Low_complexity 1 72 0 21 0 0 0 chr4 30783195 30783216 -171545131 + AT_rich Low_complexity Low_complexity 1 21 0 426 296 69 75 chr4 30783878 30784139 -171544208 + L2 LINE L2 2921 3181 -132 2162 110 0 17 chr4 30784139 30784438 -171543909 - AluSg SINE Alu -16 294 1 426 296 69 75 chr4 30784438 30784537 -171543810 + L2 LINE L2 3181 3279 -34 656 99 2 0 chr4 30784537 30784668 -171543679 + L1PA8 LINE L1 6012 6183 0 239 262 0 10 chr4 30784688 30784791 -171543556 + GA-rich Low_complexity Low_complexity 3 104 0 339 320 33 0 chr4 30785139 30785261 -171543086 - L2 LINE L2 -666 2648 2523 262 259 43 86 chr4 30785800 30785916 -171542431 + L2 LINE L2 3203 3313 0 * 591 290 55 47 chr4 30785914 30786169 -171542178 + MIR SINE MIR 6 262 0 2802 16 0 0 chr4 30787175 30787484 -171540863 + AluY SINE Alu 1 309 -2 214 273 31 31 chr4 30789353 30789481 -171538866 + (CATATA)n Simple_repeat Simple_repeat 1 128 0 23 33 0 0 chr4 30789587 30789617 -171538730 + AT_rich Low_complexity Low_complexity 1 30 0 200 291 107 29 chr4 30789968 30790071 -171538276 - MER5A DNA MER1_type -78 111 1 192 291 89 13 chr4 30790119 30790198 -171538149 + MIR3 SINE MIR 72 156 -52 350 281 103 11 chr4 30790221 30790406 -171537941 - MER112 DNA MER1_type -41 219 18 39 74 0 0 chr4 30790681 30790762 -171537585 + AT_rich Low_complexity Low_complexity 1 81 0 672 258 0 11 chr4 30791119 30791297 -171537050 - MER5B DNA MER1_type -2 176 1 21 36 0 0 chr4 30791387 30791415 -171536932 + AT_rich Low_complexity Low_complexity 1 28 0 2030 324 13 41 chr4 30791618 30792045 -171536302 + L1PA13 LINE L1 1 439 -6348 1603 154 90 39 chr4 30792045 30792402 -171535945 - THE1C LTR MaLR 0 375 1 8854 152 12 44 chr4 30792402 30794032 -171534315 - THE1C-int LTR MaLR 0 1580 4 1393 156 121 38 chr4 30794035 30794381 -171533966 - THE1C LTR MaLR 0 375 1 2030 324 13 41 chr4 30794381 30794725 -171533622 + L1PA13 LINE L1 440 755 -6032 1631 228 33 10 chr4 30794791 30795186 -171533161 + L1PA13 LINE L1 1513 1916 -4871 919 236 84 55 chr4 30795493 30795947 -171532400 + MLT1C LTR MaLR 1 467 0 287 266 11 21 chr4 30796324 30796418 -171531929 + (TA)n Simple_repeat Simple_repeat 1 93 0 202 349 99 36 chr4 30796716 30797020 -171531327 - L2 LINE L2 -337 2977 2655 189 147 0 0 chr4 30797589 30797623 -171530724 + (TC)n Simple_repeat Simple_repeat 2 35 0 2635 76 6 8 chr4 30797655 30798011 -171530336 + THE1A LTR MaLR 1 355 0 313 299 0 0 chr4 30798476 30798543 -171529804 - MLT1K LTR MaLR -342 246 180 625 237 56 47 chr4 30798548 30798763 -171529584 - MER20 DNA MER1_type 0 219 3 1729 196 25 11 chr4 30799786 30800144 -171528203 - MLT1A1 LTR MaLR 0 365 3 252 59 0 0 chr4 30800144 30800178 -171528169 + (CAT)n Simple_repeat Simple_repeat 3 36 0 1061 224 41 103 chr4 30800286 30800903 -171527444 + MLT1E3 LTR MaLR 7 610 -14 420 316 0 0 chr4 30800963 30801061 -171527286 + MIR SINE MIR 3 100 -162 183 80 0 0 chr4 30801567 30801592 -171526755 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr4 30802739 30802762 -171525585 + AT_rich Low_complexity Low_complexity 1 23 0 2451 119 3 17 chr4 30805350 30805710 -171522637 + THE1A LTR MaLR 1 355 0 11072 101 15 8 chr4 30805710 30807278 -171521069 + THE1A-int LTR MaLR 1 1580 0 2360 117 6 0 chr4 30807278 30807629 -171520718 + THE1A LTR MaLR 1 353 -2 421 289 118 21 chr4 30807903 30808090 -171520257 - MIR SINE MIR -3 259 55 240 309 80 37 chr4 30808108 30808270 -171520077 + L2 LINE L2 3133 3301 -12 4465 47 40 11 chr4 30809833 30810407 -171517940 + LTR10C LTR ERV1 1 591 0 274 320 13 0 chr4 30810538 30810613 -171517734 + polypyrimidine Low_complexity Low_complexity 5 80 0 2558 128 66 2 chr4 30810819 30811227 -171517120 + MER57B LTR ERV1 1 434 0 186 103 0 0 chr4 30812003 30812032 -171516315 + (TTTTG)n Simple_repeat Simple_repeat 4 32 0 519 92 0 0 chr4 30812995 30813082 -171515265 + (TG)n Simple_repeat Simple_repeat 2 88 0 2039 86 4 11 chr4 30816324 30816643 -171511704 + AluY SINE Alu 17 333 0 209 32 0 32 chr4 30817656 30817687 -171510660 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2312 76 0 3 chr4 30817690 30817978 -171510369 - AluY SINE Alu -24 287 1 503 313 68 16 chr4 30818491 30818683 -171509664 - MIR3 SINE MIR -5 203 2 1725 152 61 7 chr4 30819122 30819432 -171508915 + L1MA4A LINE L1 5977 6303 0 7860 142 46 8 chr4 30819810 30821051 -171507296 + THE1C-int LTR MaLR 286 1573 -7 2100 154 56 8 chr4 30821057 30821415 -171506932 + THE1C LTR MaLR 1 375 0 365 363 45 0 chr4 30821492 30821671 -171506676 - MIR SINE MIR -70 192 6 308 211 29 0 chr4 30822505 30822609 -171505738 + (TA)n Simple_repeat Simple_repeat 2 108 0 474 128 51 0 chr4 30822612 30822690 -171505657 + THE1C LTR MaLR 97 178 -197 281 185 43 0 chr4 30822690 30822782 -171505565 + (TA)n Simple_repeat Simple_repeat 2 97 0 238 276 13 26 chr4 30823489 30823565 -171504782 + L2 LINE L2 3185 3259 -54 22 0 0 0 chr4 30824261 30824283 -171504064 + GC_rich Low_complexity Low_complexity 1 22 0 65 70 0 0 chr4 30824300 30824428 -171503919 + AT_rich Low_complexity Low_complexity 1 128 0 213 100 33 17 chr4 30824448 30824508 -171503839 + (TAAA)n Simple_repeat Simple_repeat 3 63 0 305 184 48 27 chr4 30824508 30824655 -171503692 + (TATAA)n Simple_repeat Simple_repeat 1 150 0 985 187 0 0 chr4 30824945 30825111 -171503236 - FRAM SINE Alu -12 164 1 225 65 0 0 chr4 30825196 30825227 -171503120 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 255 271 60 38 chr4 30825274 30825407 -171502940 + L1M4 LINE L1 3753 3888 -2258 316 161 65 0 chr4 30825436 30825498 -171502849 - MIR SINE MIR -36 226 161 1175 200 14 0 chr4 30825535 30825750 -171502597 - MER58A DNA MER1_type -1 223 6 1410 201 80 37 chr4 30826698 30827072 -171501275 - MLT1B LTR MaLR 0 390 1 679 231 143 6 chr4 30827840 30828022 -171500325 + MER63A DNA MER1_type 4 210 0 5801 141 31 13 chr4 30828195 30829290 -171499057 - L1MA8 LINE L1 -1 6290 5174 244 317 188 20 chr4 30829513 30829715 -171498632 - L2 LINE L2 -456 2858 2623 383 305 103 6 chr4 30829889 30830063 -171498284 + L2 LINE L2 3115 3305 -8 266 286 105 29 chr4 30830211 30830316 -171498031 - L2 LINE L2 0 3313 3201 336 280 259 16 chr4 30830419 30830612 -171497735 - MIR SINE MIR -6 256 17 26 30 0 0 chr4 30831022 30831055 -171497292 + AT_rich Low_complexity Low_complexity 1 33 0 255 358 57 0 chr4 30832618 30832741 -171495606 - MIR3 SINE MIR -50 158 29 353 304 144 21 chr4 30834294 30834537 -171493810 - L1ME4a LINE L1 -82 6039 5767 2554 66 0 0 chr4 30834541 30834846 -171493501 - AluY SINE Alu -6 305 1 295 254 14 0 chr4 30834895 30834966 -171493381 - L1ME4a LINE L1 -449 5672 5601 1826 172 0 0 chr4 30835184 30835469 -171492878 + AluSx SINE Alu 1 285 -27 411 38 0 0 chr4 30835469 30835522 -171492825 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 408 255 99 28 chr4 30835579 30835720 -171492627 - MER5A DNA MER1_type -36 153 3 4895 137 23 71 chr4 30836770 30837704 -171490643 + L1MB3 LINE L1 5254 6141 -42 2059 146 0 9 chr4 30837704 30838019 -171490328 + AluSx SINE Alu 1 312 0 4895 137 23 71 chr4 30838019 30838059 -171490288 + L1MB3 LINE L1 6141 6181 -2 183 203 101 51 chr4 30838383 30838462 -171489885 - MIR3 SINE MIR -21 187 105 3325 119 40 13 chr4 30838468 30839022 -171489325 + LTR49 LTR ERV1 27 595 0 517 184 280 0 chr4 30839656 30839781 -171488566 - MER47A DNA MER2_type -206 160 1 1831 268 62 66 chr4 30839781 30839851 -171488496 - L1MEc LINE L1 -4349 2047 1978 921 127 0 0 chr4 30839851 30839969 -171488378 + FLAM_C SINE Alu 1 118 -15 1831 268 62 66 chr4 30839969 30840094 -171488253 - L1MEc LINE L1 -4418 1978 1854 3813 107 25 4 chr4 30840094 30840610 -171487737 + MER1A DNA MER1_type 1 527 0 1831 268 62 66 chr4 30840610 30841048 -171487299 - L1MEc LINE L1 -4542 1854 1414 2384 182 34 2 chr4 30841048 30841461 -171486886 - MSTB LTR MaLR 0 426 1 1831 268 62 66 chr4 30841461 30841722 -171486625 - L1MEc LINE L1 -4982 1414 1154 2602 49 0 3 chr4 30841722 30842029 -171486318 - AluSx SINE Alu -6 306 1 32 43 0 0 chr4 30842313 30842359 -171485988 + AT_rich Low_complexity Low_complexity 1 46 0 230 369 18 9 chr4 30842549 30842660 -171485687 - MIR3 SINE MIR -46 162 51 483 87 0 0 chr4 30844081 30844150 -171484197 + (GA)n Simple_repeat Simple_repeat 2 70 0 460 287 85 38 chr4 30844462 30844755 -171483592 + L1ME LINE L1 3268 3574 -2572 372 300 55 74 chr4 30844759 30844848 -171483499 + L1ME LINE L1 4095 4184 -1962 2175 104 0 0 chr4 30844848 30845127 -171483220 + AluSq SINE Alu 1 279 -34 372 300 55 74 chr4 30845127 30845294 -171483053 + L1ME LINE L1 4184 4346 -1800 595 297 68 19 chr4 30845308 30845719 -171482628 + L1ME LINE L1 4391 4821 -1325 376 245 73 123 chr4 30846649 30846853 -171481494 + MIR SINE MIR 37 230 -32 487 299 85 47 chr4 30847167 30847568 -171480779 + L1ME LINE L1 5320 5735 -386 25359 76 4 3 chr4 30848012 30851210 -171477137 - HERVL-A2 LTR ERVL -2455 3199 1 3286 92 46 0 chr4 30851210 30851643 -171476704 - MLT2A2 LTR ERVL 0 453 1 1741 136 3 107 chr4 30852345 30852691 -171475656 - AluJo SINE Alu 0 312 3 284 287 60 121 chr4 30852910 30853356 -171474991 - L2 LINE L2 -3 3269 2851 2241 75 7 0 chr4 30853540 30853847 -171474500 - AluSp SINE Alu 0 309 1 430 268 39 8 chr4 30854230 30854357 -171473990 + MER5A DNA MER1_type 59 189 0 2195 110 0 0 chr4 30854653 30854945 -171473402 - AluSc SINE Alu -17 292 1 1918 117 11 7 chr4 30854951 30855282 -171473065 - AluSx SINE Alu 0 332 1 190 132 38 19 chr4 30855511 30855564 -171472783 + GA-rich Low_complexity Low_complexity 1 54 0 295 273 279 12 chr4 30856252 30856417 -171471930 + L1MC5 LINE L1 7701 7909 -52 1434 172 0 65 chr4 30858633 30858742 -171469605 + AluJo SINE Alu 11 126 -186 216 0 0 0 chr4 30858742 30858766 -171469581 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1434 172 0 65 chr4 30858766 30858964 -171469383 + AluJo SINE Alu 126 298 -14 285 128 0 0 chr4 30859481 30859528 -171468819 + (TG)n Simple_repeat Simple_repeat 2 48 0 317 243 131 9 chr4 30859557 30859664 -171468683 - HAL1b LINE L1 -419 929 810 407 67 104 12 chr4 30859673 30859837 -171468510 + (TA)n Simple_repeat Simple_repeat 1 179 0 235 224 0 0 chr4 30859845 30859894 -171468453 + Alu SINE Alu 245 293 -9 211 104 42 0 chr4 30860734 30860782 -171467565 + (TTTG)n Simple_repeat Simple_repeat 4 53 0 260 309 49 118 chr4 30860854 30861058 -171467289 - MIR SINE MIR 0 262 73 410 274 100 47 chr4 30861673 30861863 -171466484 + MIR SINE MIR 13 212 -50 1086 218 30 25 chr4 30861987 30862312 -171466035 - L1MB7 LINE L1 -51 6123 5811 1802 189 0 0 chr4 30862367 30862673 -171465674 + AluJb SINE Alu 1 306 -6 1820 164 0 24 chr4 30863362 30863660 -171464687 + AluJb SINE Alu 1 291 -21 227 341 71 12 chr4 30863667 30863752 -171464595 + MIR SINE MIR 11 100 -162 9114 155 25 34 chr4 30863852 30865759 -171462588 + L1P3 LINE L1 1060 2942 -3519 425 216 26 43 chr4 30865992 30866108 -171462239 + MLT1J2 LTR MaLR 21 134 -316 225 252 129 93 chr4 30866203 30866342 -171462005 + MLT1J2 LTR MaLR 283 426 -24 544 241 45 100 chr4 30866385 30866675 -171461672 - L2 LINE L2 -52 3261 2988 246 347 9 18 chr4 30866689 30866908 -171461439 + L1M4 LINE L1 3555 3771 -2375 705 145 15 38 chr4 30867096 30867227 -171461120 - MSTB1 LTR MaLR -5 427 300 332 125 0 0 chr4 30867392 30867440 -171460907 - MLT2C1 LTR ERVL 0 397 350 212 323 0 0 chr4 30867494 30867559 -171460788 + (CATATA)n Simple_repeat Simple_repeat 4 68 0 715 237 163 71 chr4 30867560 30867855 -171460492 - MLT2B1 LTR ERVL -50 470 149 574 208 174 0 chr4 30868779 30868928 -171459419 + MER5A DNA MER1_type 14 188 -1 180 97 0 0 chr4 30869061 30869092 -171459255 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 1922 128 0 30 chr4 30871067 30871372 -171456975 - AluJo SINE Alu -16 296 1 799 166 133 0 chr4 30871372 30871523 -171456824 + MER58B DNA MER1_type 171 341 0 440 269 41 58 chr4 30871676 30871847 -171456500 - MIR SINE MIR -46 216 49 283 333 42 0 chr4 30871868 30871964 -171456383 - L2 LINE L2 -22 3250 3151 1674 147 14 14 chr4 30872202 30872495 -171455852 + AluJo SINE Alu 1 293 -19 270 0 0 0 chr4 30872495 30872525 -171455822 + (TG)n Simple_repeat Simple_repeat 2 31 0 573 261 16 38 chr4 30872558 30872742 -171455605 + MIR SINE MIR 83 262 0 3068 274 76 32 chr4 30873931 30874996 -171453351 - L1M4 LINE L1 -749 5397 4223 2154 112 0 0 chr4 30874996 30875292 -171453055 - AluSq SINE Alu -17 296 1 3068 274 76 32 chr4 30875292 30875995 -171452352 - L1M4 LINE L1 -1923 4223 3552 2210 88 3 0 chr4 30876146 30876441 -171451906 + AluSc SINE Alu 2 297 -12 627 317 67 48 chr4 30876501 30876832 -171451515 + L2 LINE L2 2977 3313 0 903 225 18 18 chr4 30880382 30880609 -171447738 + AluJo SINE Alu 42 268 -44 332 321 56 66 chr4 30880733 30881035 -171447312 - PABL_A LTR ERV1 -314 346 48 270 220 0 0 chr4 30881085 30881135 -171447212 - PABL_B LTR ERV1 -617 50 1 374 219 184 9 chr4 30881135 30881249 -171447098 - MIR SINE MIR -116 146 13 277 202 189 53 chr4 30881313 30881445 -171446902 + MIR SINE MIR 16 164 -67 2348 63 3 0 chr4 30881622 30881921 -171446426 + AluY SINE Alu 1 300 -11 337 355 14 0 chr4 30882807 30882945 -171445402 - L3 LINE CR1 -13 1564 1425 200 267 0 0 chr4 30882953 30882998 -171445349 - MIR3 SINE MIR -6 202 158 1225 278 89 42 chr4 30883328 30884165 -171444182 - L2 LINE L2 0 3313 2210 281 300 0 0 chr4 30884789 30884859 -171443488 - MIR SINE MIR -36 226 157 1652 215 16 37 chr4 30885059 30885441 -171442906 - MLT1A2 LTR MaLR 0 374 1 612 204 275 0 chr4 30885598 30885765 -171442582 - MIR SINE MIR -30 232 20 601 279 82 17 chr4 30886311 30886544 -171441803 + L2 LINE L2 3066 3313 0 228 276 211 16 chr4 30887130 30887253 -171441094 + MIR SINE MIR 8 154 -108 3212 135 45 2 chr4 30887256 30887766 -171440581 - LTR26 LTR ERV1 -38 565 34 239 262 156 21 chr4 30888150 30888291 -171440056 - L3 LINE CR1 -169 1408 1249 450 0 0 0 chr4 30889755 30889805 -171438542 + (CA)n Simple_repeat Simple_repeat 2 51 0 449 235 139 37 chr4 30890167 30890354 -171437993 + LTR67 LTR ERVL 352 557 0 2041 64 75 3 chr4 30890472 30890754 -171437593 - AluY SINE Alu -9 302 1 1174 315 100 8 chr4 30891406 30892279 -171436068 + ERVL LTR ERVL 2957 3947 -1817 521 222 51 0 chr4 30892412 30892529 -171435818 + MIR SINE MIR 138 260 -2 570 250 23 56 chr4 30892713 30892969 -171435378 + MER21B LTR ERV1 52 265 -598 * 4312 157 17 4 chr4 30892953 30893655 -171434692 - MER50 LTR ERV1 -23 711 1 1524 206 3 3 chr4 30893811 30894112 -171434235 + AluJb SINE Alu 3 303 -9 334 209 9 100 chr4 30894114 30894224 -171434123 + MER21-int LTR ERV1 2354 2453 -1738 1043 74 0 7 chr4 30894302 30894437 -171433910 - AluY SINE Alu -177 134 1 2226 181 81 19 chr4 30894437 30894868 -171433479 - LTR26B LTR ERV1 -73 458 1 251 291 90 52 chr4 30894884 30895018 -171433329 + MIR SINE MIR 65 203 -59 1121 216 161 52 chr4 30895398 30895838 -171432509 - MER50 LTR ERV1 -7 727 240 3557 135 26 2 chr4 30896014 30896555 -171431792 + MER41A LTR ERV1 1 554 0 494 162 430 6 chr4 30896680 30896859 -171431488 + LTR8 LTR ERV1 3 257 -434 5860 128 266 61 chr4 30896892 30898312 -171430035 - pTR5 LTR ERV1 0 2438 728 3860 99 9 3 chr4 30898297 30898880 -171429467 - PABL_B-int LTR ERV1 -3392 1623 1038 * 5881 100 21 20 chr4 30898878 30899729 -171428618 - PABL_B-int LTR ERV1 -4162 853 2 1025 166 12 0 chr4 30899731 30899900 -171428447 - PABL_B LTR ERV1 -2 665 495 215 128 26 0 chr4 30900646 30900685 -171427662 - L2 LINE L2 -17 3255 3216 * 613 275 52 26 chr4 30900653 30900846 -171427501 - MIR SINE MIR -19 243 46 1636 209 49 12 chr4 30902463 30902808 -171425539 - L1MC4a LINE L1 -1954 5854 5497 907 262 216 14 chr4 30902873 30903466 -171424881 + L2 LINE L2 2535 3230 -83 286 318 200 19 chr4 30905052 30905583 -171422764 + L2 LINE L2 2253 2975 -339 189 349 87 40 chr4 30905617 30905743 -171422604 + L2 LINE L2 3173 3304 -9 203 368 64 9 chr4 30905855 30905972 -171422375 + MIR3 SINE MIR 36 159 -49 247 295 93 39 chr4 30906010 30906139 -171422208 - MIR SINE MIR -2 260 125 1485 176 54 4 chr4 30906143 30906422 -171421925 + AluSx SINE Alu 1 293 -19 7008 149 41 0 chr4 30906535 30907628 -171420719 - THE1C-int LTR MaLR -442 1138 1 1985 138 98 17 chr4 30907628 30907975 -171420372 - THE1C LTR MaLR 0 375 1 873 174 0 0 chr4 30908398 30908542 -171419805 - PABL_B LTR ERV1 0 667 524 2026 132 0 0 chr4 30909505 30909808 -171418539 - AluSx SINE Alu -9 303 1 2133 112 0 7 chr4 30909819 30910123 -171418224 - AluSx SINE Alu -9 303 2 378 0 0 0 chr4 30911329 30911371 -171416976 + (CA)n Simple_repeat Simple_repeat 2 43 0 482 253 136 19 chr4 30912300 30912454 -171415893 + MIR SINE MIR 81 252 -10 230 282 222 8 chr4 30912769 30912886 -171415461 + MER5A DNA MER1_type 7 148 -41 1086 279 112 3 chr4 30912910 30913258 -171415089 + L2 LINE L2 2928 3313 0 575 228 37 22 chr4 30913286 30913422 -171414925 + MLT1I LTR MaLR 6 143 -266 485 277 51 0 chr4 30913503 30913640 -171414707 + MLT1I LTR MaLR 266 409 0 344 333 146 15 chr4 30914370 30914631 -171413716 + L2 LINE L2 2937 3231 -41 182 91 30 0 chr4 30914889 30914922 -171413425 + GA-rich Low_complexity Low_complexity 1 34 0 243 88 0 0 chr4 30916108 30916142 -171412205 + (TG)n Simple_repeat Simple_repeat 2 35 0 3467 102 132 2 chr4 30916712 30917252 -171411095 + LTR66 LTR ERVL 1 610 0 9135 100 20 5 chr4 30917253 30918578 -171409769 + HERVL66 LTR ERVL 1 1346 -2983 981 191 4 49 chr4 30968582 30968807 -171359540 - L1M2 LINE L1 -484 5807 5593 216 219 0 0 chr4 30968971 30969012 -171359335 + T-rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr4 30969659 30969689 -171358658 + AT_rich Low_complexity Low_complexity 1 30 0 35 63 0 0 chr4 30971274 30971337 -171357010 + AT_rich Low_complexity Low_complexity 1 63 0 238 303 13 13 chr4 30971361 30971437 -171356910 + MIR SINE MIR 51 126 -136 665 319 82 6 chr4 30971537 30971854 -171356493 + L2 LINE L2 796 1136 -2178 1022 304 131 38 chr4 30972353 30972912 -171355435 + L2 LINE L2 1163 1773 -1541 21 36 0 0 chr4 30973444 30973472 -171354875 + AT_rich Low_complexity Low_complexity 1 28 0 448 236 9 125 chr4 30973873 30974296 -171354051 + L1MC5 LINE L1 6900 7273 -688 224 237 92 0 chr4 30974439 30974515 -171353832 + L2 LINE L2 3163 3245 -68 458 286 132 78 chr4 30974775 30974894 -171353453 - HAL1 LINE L1 -135 2372 2261 1002 136 51 6 chr4 30974894 30975071 -171353276 - L1PA15 LINE L1 0 6165 5981 458 286 132 78 chr4 30975071 30975776 -171352571 - HAL1 LINE L1 -246 2261 1503 507 218 85 24 chr4 30976076 30976287 -171352060 - MER113 DNA MER1_type? -216 305 82 2175 57 7 3 chr4 30977596 30977879 -171350468 + L1PA7 LINE L1 5871 6154 0 573 294 75 0 chr4 30978637 30978824 -171349523 + MER58A DNA MER1_type 2 202 -22 189 0 0 0 chr4 30978824 30978845 -171349502 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 447 250 83 81 chr4 30979234 30979412 -171348935 - MIR3 SINE MIR -26 182 8 384 181 0 0 chr4 30980142 30980225 -171348122 + CT-rich Low_complexity Low_complexity 2 84 0 328 225 22 22 chr4 30980665 30980754 -171347593 - MIR SINE MIR -28 234 146 704 308 124 14 chr4 30981189 30981536 -171346811 + LTR16A LTR ERVL 64 448 -2 2885 163 72 0 chr4 30982239 30982793 -171345554 - L1PA16 LINE L1 -5 6161 5568 4235 206 30 7 chr4 30982901 30983693 -171344654 - L1PA16 LINE L1 -743 5403 4584 3007 85 71 2 chr4 30983693 30983732 -171344615 - MLT2A2 LTR ERVL 0 453 418 693 24 0 0 chr4 30983732 30983815 -171344532 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 3007 85 71 2 chr4 30983815 30984199 -171344148 - MLT2A2 LTR ERVL -35 418 1 4235 206 30 7 chr4 30984199 30984376 -171343971 - L1PA16 LINE L1 -1562 4584 4412 189 0 0 0 chr4 30984377 30984398 -171343949 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 683 238 99 6 chr4 30985420 30985592 -171342755 - MER5A DNA MER1_type -1 188 1 755 251 165 39 chr4 30985758 30986374 -171341973 - LTR41 LTR ERVL -12 761 5 282 311 33 0 chr4 30986511 30986601 -171341746 + L2 LINE L2 3178 3270 -2 409 308 15 8 chr4 30987441 30987571 -171340776 - L2 LINE L2 -1010 2304 2174 588 295 34 19 chr4 30987826 30988033 -171340314 - MIR SINE MIR -41 221 12 1338 184 80 3 chr4 30988889 30989177 -171339170 - 7SLRNA srpRNA srpRNA -9 311 2 216 163 0 0 chr4 30989259 30989302 -171339045 + T-rich Low_complexity Low_complexity 1 43 0 319 253 75 40 chr4 30989508 30989682 -171338665 - L1ME4a LINE L1 0 6121 5942 21 0 0 0 chr4 30989682 30989703 -171338644 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 30989826 30989856 -171338491 + AT_rich Low_complexity Low_complexity 1 30 0 566 302 54 15 chr4 30989880 30990085 -171338262 - MIR SINE MIR -19 243 31 204 222 0 0 chr4 30990242 30990278 -171338069 + polypyrimidine Low_complexity Low_complexity 4 39 0 11832 195 62 11 chr4 30990532 30992261 -171336086 - Tigger1 DNA MER2_type -1 2417 543 1788 159 25 0 chr4 30992261 30992582 -171335765 - AluSx SINE Alu 0 328 1 11832 195 62 11 chr4 30992582 30993124 -171335223 - Tigger1 DNA MER2_type -1875 543 30 194 351 39 13 chr4 30993208 30993285 -171335062 + L2 LINE L2 3235 3313 0 855 97 0 0 chr4 30993673 30993786 -171334561 + AluSg SINE Alu 1 113 -197 445 208 9 57 chr4 30993787 30993893 -171334454 - MER5A DNA MER1_type -86 103 3 21 0 0 0 chr4 30994182 30994203 -171334144 + AT_rich Low_complexity Low_complexity 1 21 0 2014 124 0 0 chr4 30994210 30994548 -171333799 - AluSx SINE Alu 0 338 1 2068 197 24 53 chr4 30994878 30995422 -171332925 - L1MA7 LINE L1 -6 6285 5758 252 296 11 11 chr4 30996057 30996145 -171332202 + GA-rich Low_complexity Low_complexity 1 88 0 2958 134 15 0 chr4 30996630 30997107 -171331240 + LTR19A LTR ERV1 1 484 -2 197 306 20 0 chr4 30997973 30998022 -171330325 + L2 LINE L2 3134 3183 -89 65 45 0 9 chr4 30998758 30998830 -171329517 + AT_rich Low_complexity Low_complexity 1 73 -37 2211 102 0 0 chr4 30998830 30999125 -171329222 - AluSx SINE Alu -15 297 3 65 45 0 9 chr4 30999125 30999163 -171329184 + AT_rich Low_complexity Low_complexity 73 110 0 3226 195 6 5 chr4 30999275 30999920 -171328427 - L1MB3 LINE L1 -11 6172 5527 440 195 0 11 chr4 31000975 31001062 -171327285 - Tigger5 DNA MER2_type 0 2323 2238 363 261 0 11 chr4 31001115 31001203 -171327144 + Tigger5 DNA MER2_type 2 88 -2235 375 162 15 15 chr4 31001225 31001293 -171327054 - Tigger5 DNA MER2_type -5 2318 2251 333 200 0 0 chr4 31001262 31001317 -171327030 - Tigger5 DNA MER2_type -2268 55 1 * 227 203 34 17 chr4 31002174 31002233 -171326114 - L2 LINE L2 -11 3261 3202 22 0 0 0 chr4 31002556 31002578 -171325769 + AT_rich Low_complexity Low_complexity 1 22 0 198 336 30 76 chr4 31002829 31002960 -171325387 - L2 LINE L2 -1 3271 3147 200 376 97 4 chr4 31003166 31003392 -171324955 - L2 LINE L2 -352 2962 2716 986 289 69 17 chr4 31003513 31003991 -171324356 - L1ME3A LINE L1 -138 6032 5530 902 313 59 32 chr4 31004050 31004488 -171323859 + L1MEd LINE L1 928 1377 -5257 24 0 0 0 chr4 31004491 31004515 -171323832 + AT_rich Low_complexity Low_complexity 1 24 0 378 282 68 21 chr4 31004609 31004854 -171323493 + L1MEd LINE L1 1538 1827 -4817 1174 271 121 12 chr4 31005374 31005795 -171322552 - MLT1C LTR MaLR 0 467 1 21 100 0 0 chr4 31005927 31005997 -171322350 + AT_rich Low_complexity Low_complexity 1 70 0 29 70 0 0 chr4 31007031 31007088 -171321259 + AT_rich Low_complexity Low_complexity 1 57 0 1880 144 24 3 chr4 31007100 31007391 -171320956 - AluSx SINE Alu -15 297 1 263 170 21 0 chr4 31007762 31007809 -171320538 + LTR48B LTR ERV1 510 557 -87 2419 186 105 21 chr4 31007866 31008435 -171319912 - LTR48 LTR ERV1 -170 617 1 201 196 0 0 chr4 31008475 31008521 -171319826 + (CTCA)n Simple_repeat Simple_repeat 2 47 0 490 306 89 62 chr4 31008521 31008857 -171319490 - L2 LINE L2 0 3313 2969 449 279 71 33 chr4 31010898 31011070 -171317277 - MLT1J1 LTR MaLR 0 446 274 283 300 106 62 chr4 31012153 31012426 -171315921 - L2 LINE L2 0 3313 3029 267 392 15 30 chr4 31012565 31012764 -171315583 - L2 LINE L2 -454 2860 2665 827 332 151 11 chr4 31012834 31013364 -171314983 - L2 LINE L2 -832 2482 1879 2062 119 3 0 chr4 31013983 31014277 -171314070 - AluSq SINE Alu -18 295 1 1703 141 56 0 chr4 31014416 31014686 -171313661 - AluSq SINE Alu -28 285 1 375 127 0 28 chr4 31014952 31015023 -171313324 - L1MA9 LINE L1 -1 6311 6243 5529 142 11 34 chr4 31015024 31016610 -171311737 - pTR5 LTR ERV1 -2 2436 745 374 192 40 20 chr4 31016610 31016709 -171311638 - L1MA9 LINE L1 -59 6253 6153 23 0 0 0 chr4 31017765 31017788 -171310559 + AT_rich Low_complexity Low_complexity 1 23 0 254 312 64 28 chr4 31017989 31018098 -171310249 - MIR SINE MIR -75 133 21 1335 157 14 128 chr4 31018441 31018786 -171309561 - AluJb SINE Alu -6 306 1 25 0 0 0 chr4 31018878 31018903 -171309444 + AT_rich Low_complexity Low_complexity 1 25 0 337 314 105 19 chr4 31019317 31019575 -171308772 - L2 LINE L2 -411 2903 2624 203 200 0 40 chr4 31020512 31020587 -171307760 + T-rich Low_complexity Low_complexity 1 72 0 182 350 17 17 chr4 31020692 31020752 -171307595 + MIR SINE MIR 16 75 -133 21 0 0 0 chr4 31020952 31020973 -171307374 + AT_rich Low_complexity Low_complexity 1 21 0 2275 86 3 49 chr4 31022135 31022461 -171305886 - AluSp SINE Alu -2 311 1 391 286 10 101 chr4 31022493 31022692 -171305655 + MLT1J1 LTR MaLR 118 298 -148 2523 57 0 25 chr4 31022697 31023015 -171305332 - AluY SINE Alu -1 310 1 270 289 52 31 chr4 31024318 31024415 -171303932 - L2 LINE L2 0 3313 3215 24 0 0 0 chr4 31024680 31024704 -171303643 + AT_rich Low_complexity Low_complexity 1 24 0 2927 155 6 22 chr4 31024722 31025258 -171303089 + L1PA16 LINE L1 5631 6157 -9 244 348 92 12 chr4 31025640 31025804 -171302543 + MIR3 SINE MIR 23 199 -9 2273 133 23 6 chr4 31026405 31026757 -171301590 - THE1B LTR MaLR -6 358 1 543 286 67 6 chr4 31027843 31028021 -171300326 + MIR SINE MIR 37 225 -37 1846 87 11 30 chr4 31028088 31028352 -171299995 - AluSx SINE Alu -15 297 39 390 270 95 7 chr4 31028385 31028522 -171299825 + L2 LINE L2 3165 3313 0 216 315 128 44 chr4 31028599 31028802 -171299545 - MIR SINE MIR 0 262 43 184 151 151 57 chr4 31029745 31029798 -171298549 - L2 LINE L2 -1 3312 3255 23 0 0 0 chr4 31030623 31030646 -171297701 + AT_rich Low_complexity Low_complexity 1 23 0 256 83 0 0 chr4 31031097 31031133 -171297214 - MLT2F LTR ERVL -8 655 620 623 69 30 23 chr4 31031139 31031270 -171297077 + (TAGA)n Simple_repeat Simple_repeat 2 133 0 865 260 21 47 chr4 31031311 31031650 -171296697 - MLT2C1 LTR ERVL -65 332 3 247 362 43 0 chr4 31031968 31032084 -171296263 + MIR3 SINE MIR 43 163 -45 217 244 26 39 chr4 31032434 31032512 -171295835 + GA-rich Low_complexity Low_complexity 6 82 0 210 71 0 0 chr4 31033328 31033356 -171294991 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 212 0 36 0 chr4 31034042 31034070 -171294277 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 204 277 0 0 chr4 31034894 31034959 -171293388 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 1722 142 30 53 chr4 31035364 31035667 -171292680 - AluSg SINE Alu -14 296 1 33 97 0 0 chr4 31035775 31035878 -171292469 + AT_rich Low_complexity Low_complexity 1 103 0 1467 147 15 15 chr4 31036832 31037098 -171291249 - MER34B LTR ERV1 -5 560 295 579 118 0 126 chr4 31037198 31037325 -171291022 - MER34B LTR ERV1 -454 111 1 21 36 0 0 chr4 31037577 31037605 -171290742 + AT_rich Low_complexity Low_complexity 1 28 0 270 185 31 15 chr4 31037929 31037994 -171290353 - MER34B LTR ERV1 -95 470 405 201 250 0 0 chr4 31038005 31038045 -171290302 + polypyrimidine Low_complexity Low_complexity 3 42 0 585 282 120 24 chr4 31038284 31038575 -171289772 - L2 LINE L2 0 3313 2995 2111 118 7 3 chr4 31038621 31038926 -171289421 + AluSp SINE Alu 1 306 -7 760 156 56 38 chr4 31038939 31039099 -171289248 - MER31B LTR ERV1 -4 462 300 1349 98 10 10 chr4 31039694 31039898 -171288449 - L1PA14 LINE L1 -5 6156 5953 17838 169 48 7 chr4 31039904 31043760 -171284587 - L1PA12 LINE L1 -3537 4047 42 198 0 0 0 chr4 31043786 31043808 -171284539 + (A)n Simple_repeat Simple_repeat 1 22 0 240 321 223 0 chr4 31044250 31044434 -171283913 + L2 LINE L2 2737 2961 -353 221 407 50 7 chr4 31044620 31044760 -171283587 - L2 LINE L2 -229 3043 2898 643 247 77 52 chr4 31045162 31045590 -171282757 - MLT1D LTR MaLR 0 505 21 28 29 0 0 chr4 31046056 31046091 -171282256 + AT_rich Low_complexity Low_complexity 1 35 0 399 271 41 0 chr4 31046149 31046271 -171282076 + MLT2E LTR ERVL 1 127 -501 24 0 0 0 chr4 31049218 31049242 -171279105 + AT_rich Low_complexity Low_complexity 1 24 0 186 43 0 0 chr4 31050647 31050670 -171277677 + (TTG)n Simple_repeat Simple_repeat 2 24 0 905 247 24 43 chr4 31051421 31051676 -171276671 + MLT1A2 LTR MaLR 6 255 -119 2423 93 0 3 chr4 31051945 31052258 -171276089 - AluSq SINE Alu -1 312 1 315 241 23 35 chr4 31054350 31054437 -171273910 + MIR3 SINE MIR 87 172 -36 731 237 13 0 chr4 31054539 31054872 -171273475 + FRAM SINE Alu 1 199 0 1014 149 0 6 chr4 31054691 31054905 -171273442 + (GAA)n Simple_repeat Simple_repeat 1 213 0 198 103 0 0 chr4 31055739 31055768 -171272579 + (TATG)n Simple_repeat Simple_repeat 4 32 0 355 169 0 0 chr4 31056157 31056216 -171272131 - MER30 DNA MER1_type -36 194 136 2091 132 7 0 chr4 31056232 31056528 -171271819 + AluSx SINE Alu 3 300 -12 25 0 0 0 chr4 31056914 31056939 -171271408 + AT_rich Low_complexity Low_complexity 1 25 0 22 99 0 0 chr4 31057139 31057210 -171271137 + AT_rich Low_complexity Low_complexity 1 71 0 1875 181 56 0 chr4 31057466 31057787 -171270560 + LTR32 LTR ERVL 14 352 -119 766 190 0 19 chr4 31057830 31057988 -171270359 + LTR32 LTR ERVL 317 471 0 183 231 46 15 chr4 31058043 31058108 -171270239 - MIR SINE MIR -95 167 101 1790 228 78 5 chr4 31058162 31058749 -171269598 - MER39 LTR ERV1 0 707 4 523 289 59 16 chr4 31058772 31058959 -171269388 + MIR SINE MIR 68 262 0 608 86 0 11 chr4 31059013 31059106 -171269241 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 223 383 19 9 chr4 31059296 31059403 -171268944 - MIR SINE MIR -96 166 59 295 289 31 19 chr4 31059696 31059855 -171268492 + (TATATG)n Simple_repeat Simple_repeat 4 164 0 252 322 126 37 chr4 31060278 31060492 -171267855 + MIR SINE MIR 24 256 -6 1723 213 18 45 chr4 31060697 31061186 -171267161 + MER31A LTR ERV1 1 476 -9 524 319 97 42 chr4 31061207 31061681 -171266666 + L2 LINE L2 2183 2682 -632 1365 211 68 53 chr4 31061689 31062142 -171266205 + MER31B LTR ERV1 3 541 -2 201 147 0 0 chr4 31062200 31062234 -171266113 + (AAATG)n Simple_repeat Simple_repeat 2 35 0 238 348 78 10 chr4 31062309 31062513 -171265834 + L2 LINE L2 2967 3184 -129 201 300 71 0 chr4 31064118 31064188 -171264159 - MER91C DNA MER1_type -30 110 36 696 273 64 29 chr4 31064925 31065423 -171262924 + L1ME3A LINE L1 5378 5894 -276 1780 176 6 6 chr4 31065500 31065812 -171262535 + AluJb SINE Alu 1 312 0 237 185 15 15 chr4 31066474 31066539 -171261808 - LTR49 LTR ERV1 -36 559 495 1773 180 0 3 chr4 31066611 31066906 -171261441 + AluSx SINE Alu 1 294 -18 277 43 43 0 chr4 31066906 31066953 -171261394 + (TA)n Simple_repeat Simple_repeat 2 50 0 3030 127 60 10 chr4 31066960 31067478 -171260869 - MER39B LTR ERV1 -109 544 1 469 165 0 0 chr4 31067728 31067819 -171260528 - L1MA9 LINE L1 -1 6311 6221 744 152 27 51 chr4 31067828 31067986 -171260361 - L1MA9 LINE L1 -137 6154 5991 14837 211 32 39 chr4 31068741 31071580 -171256767 - L1PA15-16 LINE L1 -1823 5026 2167 219 36 0 0 chr4 31071580 31071608 -171256739 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1698 163 4 0 chr4 31071616 31071886 -171256461 - AluSx SINE Alu -39 273 3 14837 211 32 39 chr4 31071886 31073037 -171255310 - L1PA15-16 LINE L1 -4689 2160 1084 2328 126 22 0 chr4 31073037 31073393 -171254954 - THE1B LTR MaLR 0 364 1 14837 211 32 39 chr4 31073393 31074461 -171253886 - L1PA15-16 LINE L1 -5765 1084 10 207 0 0 0 chr4 31074464 31074487 -171253860 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7663 81 22 0 chr4 31075714 31077549 -171250798 - L1PA7 LINE L1 -1 6153 4289 305 369 34 73 chr4 31077833 31078066 -171250281 - L2 LINE L2 -17 3255 3032 29 0 0 0 chr4 31078151 31078180 -171250167 + AT_rich Low_complexity Low_complexity 1 29 0 297 307 121 62 chr4 31078203 31078460 -171249887 - MLT1J2 LTR MaLR -115 335 64 1915 157 0 7 chr4 31078895 31079200 -171249147 + AluJo SINE Alu 1 303 -9 1028 207 31 22 chr4 31079203 31079430 -171248917 + MLT1C LTR MaLR 191 419 -48 25 0 0 0 chr4 31079650 31079675 -171248672 + AT_rich Low_complexity Low_complexity 1 25 0 296 255 39 0 chr4 31080106 31080259 -171248088 + GA-rich Low_complexity Low_complexity 2 160 0 274 340 34 20 chr4 31080879 31081026 -171247321 + MLT1K LTR MaLR 272 420 -168 180 385 0 11 chr4 31081678 31081769 -171246578 - L2 LINE L2 -2 3311 3222 306 194 0 0 chr4 31081873 31081935 -171246412 + (TATG)n Simple_repeat Simple_repeat 3 64 0 2077 106 0 26 chr4 31081936 31082238 -171246109 - AluY SINE Alu -17 294 1 385 40 66 0 chr4 31082339 31082415 -171245932 + (TA)n Simple_repeat Simple_repeat 1 81 0 2026 134 3 0 chr4 31082415 31082699 -171245648 - AluSx SINE Alu -26 286 2 1153 274 141 18 chr4 31083655 31084158 -171244189 - L1ME3 LINE L1 -7 6155 5591 370 82 0 0 chr4 31084811 31084860 -171243487 - MADE1 DNA Mariner -29 51 3 1349 121 232 11 chr4 31084919 31085199 -171243148 - MER61A LTR ERV1 -1 342 1 1218 332 72 25 chr4 31085898 31086618 -171241729 + HERV16 LTR ERVL 690 1443 -3553 207 0 0 0 chr4 31086817 31086840 -171241507 + (CATA)n Simple_repeat Simple_repeat 4 26 0 1793 331 46 36 chr4 31086854 31088028 -171240319 + HERV16 LTR ERVL 1697 2914 -2082 433 115 52 0 chr4 31088028 31088124 -171240223 + (TA)n Simple_repeat Simple_repeat 2 102 0 356 336 12 37 chr4 31088171 31088439 -171239908 + HERV16 LTR ERVL 2976 3291 -2473 308 336 0 0 chr4 31088429 31088536 -171239811 + HERV16 LTR ERVL 4629 4735 -1029 * 189 191 43 85 chr4 31088550 31088597 -171239750 + L3 LINE CR1 1295 1339 -238 514 341 28 28 chr4 31088610 31088935 -171239412 + HERV16 LTR ERVL 4816 5140 -624 1094 255 24 32 chr4 31088998 31089339 -171239008 + MLT1A1 LTR MaLR 1 338 -27 330 293 36 14 chr4 31089430 31089570 -171238777 + HERV16 LTR ERVL 4790 4932 -64 682 318 58 58 chr4 31089583 31090029 -171238318 + LTR16B LTR ERVL 6 451 -13 22 0 0 0 chr4 31090267 31090289 -171238058 + AT_rich Low_complexity Low_complexity 1 22 0 240 167 0 0 chr4 31090755 31090803 -171237544 + (TA)n Simple_repeat Simple_repeat 1 48 0 970 101 0 7 chr4 31090877 31091015 -171237332 - MER50 LTR ERV1 -131 603 467 279 0 0 0 chr4 31091016 31091047 -171237300 + (GA)n Simple_repeat Simple_repeat 2 32 0 1317 173 75 25 chr4 31091247 31091530 -171236817 - LTR8A LTR ERV1 -2 725 406 1737 131 6 59 chr4 31091667 31091987 -171236360 + MER50 LTR ERV1 297 599 -135 246 62 0 0 chr4 31091987 31092019 -171236328 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1496 123 9 4 chr4 31092030 31092258 -171236089 - LTR8A LTR ERV1 -236 491 263 898 265 111 31 chr4 31092695 31093192 -171235155 - L1ME1 LINE L1 -46 6120 5664 1762 177 3 6 chr4 31093192 31093503 -171234844 + AluJb SINE Alu 1 310 -2 898 265 111 31 chr4 31093503 31094833 -171233514 - L1ME1 LINE L1 -502 5664 4075 39 0 0 0 chr4 31095132 31095171 -171233176 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr4 31095365 31095387 -171232960 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr4 31096670 31096705 -171231642 + AT_rich Low_complexity Low_complexity 1 35 0 2135 118 7 0 chr4 31097665 31097969 -171230378 - AluSx SINE Alu -6 306 1 25 0 0 0 chr4 31099119 31099144 -171229203 + AT_rich Low_complexity Low_complexity 1 25 0 323 284 11 0 chr4 31099353 31099448 -171228899 + L1MDa LINE L1 10 105 -6435 392 0 30 45 chr4 31099464 31099530 -171228817 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 2025 117 0 0 chr4 31099993 31100274 -171228073 - AluSc SINE Alu -14 295 15 1293 191 12 12 chr4 31102226 31102483 -171225864 - L1MB1 LINE L1 -1 6167 5911 192 125 0 0 chr4 31102717 31102749 -171225598 + (TC)n Simple_repeat Simple_repeat 1 32 0 209 208 0 19 chr4 31102967 31103020 -171225327 + (TTG)n Simple_repeat Simple_repeat 1 52 0 367 280 178 0 chr4 31105937 31106212 -171222135 - MER69 DNA AcHobo -164 2362 2039 1057 308 121 10 chr4 31106214 31106695 -171221652 - MER69 DNA AcHobo -587 639 106 540 235 251 22 chr4 31107546 31107725 -171220622 - MER58A DNA MER1_type -4 220 1 961 195 284 3 chr4 31107835 31108127 -171220220 + MLT1A2 LTR MaLR 1 374 0 11968 231 21 26 chr4 31109282 31113714 -171214633 - L1PA16 LINE L1 -9 6860 2463 7241 199 58 24 chr4 31113699 31115321 -171213026 - L1PA16 LINE L1 -4777 2072 2 * 23 0 0 0 chr4 31116484 31116507 -171211840 + AT_rich Low_complexity Low_complexity 1 23 0 203 170 19 38 chr4 31117013 31117066 -171211281 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 1096 79 0 7 chr4 31117276 31117416 -171210931 - AluSq/x SINE Alu -174 139 1 1016 175 133 45 chr4 31117416 31117526 -171210821 - L1MCa LINE L1 -4157 2269 2170 391 173 0 25 chr4 31117526 31117607 -171210740 - MADE1 DNA Mariner -1 79 1 1016 175 133 45 chr4 31117607 31117805 -171210542 - L1MCa LINE L1 -4256 2170 1934 347 189 126 0 chr4 31117860 31117971 -171210376 - AluSc SINE Alu -20 279 155 246 128 0 0 chr4 31118093 31118132 -171210215 + (TA)n Simple_repeat Simple_repeat 1 39 0 1902 161 0 0 chr4 31118146 31118425 -171209922 - AluSx SINE Alu -30 282 4 6490 199 71 39 chr4 31118428 31120226 -171208121 - L1MCa LINE L1 -4494 1992 3 181 292 0 0 chr4 31120443 31120491 -171207856 + MIR SINE MIR 125 172 -90 2289 109 0 0 chr4 31121329 31121631 -171206716 - AluY SINE Alu -7 304 3 266 241 93 56 chr4 31121941 31122049 -171206298 + LTR67 LTR ERVL 429 540 -17 379 326 44 15 chr4 31122421 31122556 -171205791 - MLT1J2 LTR MaLR -238 212 74 * 912 121 0 0 chr4 31122552 31122684 -171205663 - MLT2A1 LTR ERVL -312 132 1 826 208 60 16 chr4 31123371 31123554 -171204793 - MER2 DNA MER2_type 0 345 155 21 36 0 0 chr4 31124509 31124537 -171203810 + AT_rich Low_complexity Low_complexity 1 28 0 549 163 0 78 chr4 31126268 31126397 -171201950 - L1ME LINE L1 -458 5706 5588 247 312 68 51 chr4 31126439 31126750 -171201597 - L1ME LINE L1 -267 5854 5539 280 376 119 29 chr4 31126815 31127025 -171201322 - L3 LINE CR1 -9 1568 1340 1047 199 104 128 chr4 31127477 31127856 -171200491 + MLT2D LTR ERVL 2 372 -42 369 0 0 0 chr4 31127856 31127897 -171200450 + (CA)n Simple_repeat Simple_repeat 2 42 0 1047 199 104 128 chr4 31127897 31127940 -171200407 + MLT2D LTR ERVL 372 414 0 195 263 35 18 chr4 31129163 31129220 -171199127 + L2 LINE L2 3255 3312 -1 183 351 13 13 chr4 31129245 31129322 -171199025 - MIR SINE MIR -130 132 56 1879 68 38 4 chr4 31131954 31132217 -171196130 - AluY SINE Alu -21 290 19 184 395 32 0 chr4 31132525 31132649 -171195698 - L2 LINE L2 -5 3308 3181 2204 90 3 10 chr4 31133055 31133354 -171194993 - AluSp SINE Alu -16 297 1 384 263 95 29 chr4 31133781 31133918 -171194429 - MIR SINE MIR -64 198 53 26 0 0 0 chr4 31135299 31135325 -171193022 + AT_rich Low_complexity Low_complexity 1 26 0 230 346 58 0 chr4 31135594 31135698 -171192649 - L2 LINE L2 -4 3309 3200 21 36 0 0 chr4 31135840 31135868 -171192479 + AT_rich Low_complexity Low_complexity 1 28 0 333 343 118 39 chr4 31135905 31136243 -171192104 - L2 LINE L2 -8 3264 2900 2332 69 0 20 chr4 31136778 31137082 -171191265 - AluY SINE Alu -13 298 1 188 297 31 16 chr4 31137583 31137647 -171190700 + MIR SINE MIR 36 100 -108 302 247 11 43 chr4 31137877 31137970 -171190377 + CT-rich Low_complexity Low_complexity 1 90 0 200 280 27 40 chr4 31137973 31138048 -171190299 + MIR3 SINE MIR 125 198 -10 270 291 84 67 chr4 31138693 31138872 -171189475 + MIR SINE MIR 37 218 -44 22 35 0 0 chr4 31141047 31141076 -171187271 + AT_rich Low_complexity Low_complexity 1 29 0 223 311 54 0 chr4 31141165 31141239 -171187108 - MIR SINE MIR -60 148 71 23 33 0 0 chr4 31141391 31141421 -171186926 + AT_rich Low_complexity Low_complexity 1 30 0 466 289 109 6 chr4 31141676 31141832 -171186515 + MIR SINE MIR 47 218 -44 262 255 11 53 chr4 31142265 31142359 -171185988 - MER103 DNA DNA -75 91 2 384 350 43 6 chr4 31142515 31142678 -171185669 + MIR SINE MIR 45 213 -49 348 64 0 0 chr4 31142790 31142837 -171185510 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 2112 107 0 41 chr4 31142838 31143157 -171185190 - AluSp SINE Alu -7 306 1 9947 187 29 29 chr4 31144303 31147779 -171180568 - L1MA6 LINE L1 0 6482 3012 4302 254 43 41 chr4 31147779 31149613 -171178734 - L1MA6 LINE L1 -3950 2378 539 251 328 41 25 chr4 31149644 31149766 -171178581 - L1MA6 LINE L1 -5517 732 609 830 311 33 46 chr4 31150013 31150470 -171177877 - L1MA6 LINE L1 -5504 745 295 227 366 0 0 chr4 31150668 31150750 -171177597 - L2 LINE L2 -3 3269 3188 226 244 0 0 chr4 31150914 31150955 -171177392 - L2 LINE L2 -214 3058 3018 2341 69 0 20 chr4 31150996 31151301 -171177046 + AluY SINE Alu 1 299 -12 615 341 41 46 chr4 31152169 31152796 -171175551 - HERVL LTR ERVL -2499 2497 1855 970 9 0 18 chr4 31152973 31153083 -171175264 - AluSc SINE Alu -181 128 21 1429 206 36 46 chr4 31154565 31154977 -171173370 - Tigger2 DNA MER2_type -329 2389 1982 * 5050 150 48 3 chr4 31154948 31155815 -171172532 - Tigger2 DNA MER2_type -510 2208 1303 1521 163 6 59 chr4 31156087 31156407 -171171940 + MER50 LTR ERV1 297 599 -135 246 62 0 0 chr4 31156407 31156439 -171171908 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 3088 136 16 2 chr4 31156450 31156934 -171171413 - LTR8A LTR ERV1 -236 491 1 332 239 0 106 chr4 31157719 31157832 -171170515 + Tigger2 DNA MER2_type 2608 2708 -10 191 266 16 16 chr4 31157909 31157973 -171170374 + MIR SINE MIR 65 128 -134 202 252 108 54 chr4 31158242 31158353 -171169994 + MIR SINE MIR 125 241 -21 205 297 50 40 chr4 31158373 31158474 -171169873 + L3 LINE CR1 1211 1312 -265 621 298 109 42 chr4 31159231 31159634 -171168713 + L1MDa LINE L1 33 462 -6078 256 293 17 0 chr4 31159837 31159895 -171168452 + L1MDa LINE L1 811 869 -5671 1181 205 79 48 chr4 31160174 31160594 -171167753 + L1MDa LINE L1 1025 1457 -5086 2331 63 3 19 chr4 31160786 31161101 -171167246 - AluY SINE Alu -1 310 1 24 53 0 0 chr4 31161529 31161567 -171166780 + AT_rich Low_complexity Low_complexity 1 38 0 3355 291 32 33 chr4 31162196 31163397 -171164950 - L1M2a LINE L1 -5962 1206 7 271 196 0 18 chr4 31163404 31163460 -171164887 + MER34 LTR ERV1 176 230 -312 772 288 93 21 chr4 31163564 31163788 -171164559 + MER90 LTR ERV1 41 306 -269 3780 140 22 64 chr4 31163788 31164509 -171163838 - LTR8 LTR ERV1 0 691 1 772 288 93 21 chr4 31164509 31164669 -171163678 + MER90 LTR ERV1 306 453 -122 21 36 0 0 chr4 31164857 31164885 -171163462 + AT_rich Low_complexity Low_complexity 1 28 0 333 0 0 0 chr4 31165792 31165829 -171162518 + (TG)n Simple_repeat Simple_repeat 2 38 0 263 312 46 18 chr4 31165913 31166022 -171162325 - MLT1J LTR MaLR -344 167 56 4831 115 3 0 chr4 31166732 31167438 -171160909 - L1PA12 LINE L1 0 6168 5461 975 259 94 49 chr4 31167441 31168217 -171160130 - L1M1 LINE L1 -3966 3599 2789 366 247 62 90 chr4 31168333 31168428 -171159919 - MLT1B LTR MaLR -217 173 84 1950 156 7 0 chr4 31168428 31168735 -171159612 + AluSq SINE Alu 2 310 -3 366 247 62 90 chr4 31168735 31168817 -171159530 - MLT1B LTR MaLR -306 84 1 843 272 42 10 chr4 31168884 31169187 -171159160 + MLT1D LTR MaLR 137 453 -52 2673 116 0 17 chr4 31169199 31169612 -171158735 - L1PA5 LINE L1 0 6154 5749 5763 134 10 14 chr4 31169737 31170126 -171158221 - L1PA13 LINE L1 -10 6153 5764 1324 151 24 114 chr4 31170126 31170458 -171157889 - AluYb8 SINE Alu -16 302 1 5763 134 10 14 chr4 31170458 31170863 -171157484 - L1PA13 LINE L1 -399 5764 5358 1746 93 0 0 chr4 31170863 31171078 -171157269 - AluSc SINE Alu -11 298 84 5763 134 10 14 chr4 31171078 31171333 -171157014 - L1PA13 LINE L1 -805 5358 5104 2881 205 5 2 chr4 31171436 31172007 -171156340 + L1P LINE L1 2407 2979 -3167 4316 201 7 3 chr4 31172010 31172886 -171155461 + L1P LINE L1 3778 4656 -1490 1200 109 0 60 chr4 31172886 31173069 -171155278 + AluSq SINE Alu 1 172 -141 797 157 0 0 chr4 31173069 31173184 -171155163 + AluSc SINE Alu 138 252 -57 970 123 0 0 chr4 31173185 31173315 -171155032 + AluSg/x SINE Alu 149 278 -34 861 129 0 7 chr4 31173340 31173479 -171154868 + L1P LINE L1 4644 4781 -1365 181 0 0 65 chr4 31174052 31174083 -171154264 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1440 175 0 16 chr4 31174099 31174356 -171153991 + L1MB3 LINE L1 5579 5831 -352 2192 97 0 59 chr4 31174357 31174678 -171153669 + AluSq SINE Alu 1 302 -11 1607 116 0 0 chr4 31174960 31175176 -171153171 - AluSg/x SINE Alu -1 311 96 38695 93 11 3 chr4 31175276 31180484 -171147863 - L1P LINE L1 -750 5396 151 806 129 21 0 chr4 31230486 31230626 -171097721 - L1PA5 LINE L1 -374 5780 5638 1364 281 58 30 chr4 31230630 31231161 -171097186 + MER74B LTR ERVL 66 611 -11 2476 243 75 3 chr4 31233006 31233717 -171094630 - L1MB8 LINE L1 -3 6175 5414 363 284 0 49 chr4 31233974 31234076 -171094271 - MER5A DNA MER1_type -55 134 38 225 146 49 0 chr4 31234176 31234217 -171094130 - MER105 DNA DNA -159 45 3 216 0 0 0 chr4 31236138 31236162 -171092185 + (A)n Simple_repeat Simple_repeat 1 24 0 191 88 29 0 chr4 31237182 31237216 -171091131 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 219 122 49 0 chr4 31237829 31237870 -171090477 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1030 222 10 28 chr4 31238064 31238465 -171089882 - MER31B LTR ERV1 -30 436 2 202 264 0 0 chr4 31238623 31238676 -171089671 - MIR SINE MIR -26 236 184 1246 113 72 10 chr4 31239912 31240106 -171088241 - AluSc SINE Alu -20 289 84 918 221 57 94 chr4 31240157 31240560 -171087787 + MLT1B LTR MaLR 1 388 -2 268 75 0 25 chr4 31241310 31241350 -171086997 - MLT1I LTR MaLR 0 409 371 1056 106 129 18 chr4 31241396 31241566 -171086781 + MSTA LTR MaLR 5 193 -235 2945 180 37 28 chr4 31242692 31243375 -171084972 + L1MA7 LINE L1 5596 6284 -7 31 0 0 0 chr4 31243563 31243594 -171084753 + AT_rich Low_complexity Low_complexity 1 31 0 562 322 26 47 chr4 31244624 31244874 -171083473 + L2 LINE L2 2204 2447 -867 1429 231 22 22 chr4 31244874 31245238 -171083109 - MLT1A1 LTR MaLR 0 365 2 562 322 26 47 chr4 31245238 31245329 -171083018 + L2 LINE L2 2447 2538 -776 2370 237 36 26 chr4 31246346 31246950 -171081397 - MER90 LTR ERV1 -4 610 1 3075 158 19 23 chr4 31247266 31247886 -171080461 - L1MA7 LINE L1 -2 6289 5672 2351 123 22 3 chr4 31248338 31248695 -171079652 - THE1B LTR MaLR 0 364 1 230 361 83 37 chr4 31248907 31249015 -171079332 - L2 LINE L2 -4 3268 3156 1546 200 50 9 chr4 31249585 31250048 -171078299 - LTR53 LTR ERVL -12 507 1 255 378 87 5 chr4 31250947 31251143 -171077204 + L2 LINE L2 2463 2674 -640 271 266 94 47 chr4 31251154 31251282 -171077065 + L2 LINE L2 3180 3313 0 653 203 7 27 chr4 31251638 31251786 -171076561 + MER105 DNA DNA 1 145 -59 306 266 0 0 chr4 31251798 31251877 -171076470 + MER105 DNA DNA 123 201 -3 979 120 25 0 chr4 31253653 31253811 -171074536 - AluY SINE Alu -148 163 2 380 310 28 21 chr4 31254272 31254414 -171073933 - MIR SINE MIR -1 261 119 949 213 81 110 chr4 31254414 31254779 -171073568 + MLT1A2 LTR MaLR 1 356 -18 324 352 19 0 chr4 31254798 31254906 -171073441 - MIR SINE MIR -140 122 13 1651 116 0 0 chr4 31255294 31255519 -171072828 - AluSg/x SINE Alu -10 300 76 24 0 0 0 chr4 31255520 31255544 -171072803 + AT_rich Low_complexity Low_complexity 1 24 0 490 305 12 6 chr4 31256499 31256663 -171071684 - MER69A DNA AcHobo -7 170 6 307 190 9 103 chr4 31258038 31258154 -171070193 - MLT1J1 LTR MaLR -321 125 21 290 245 32 21 chr4 31258188 31258282 -171070065 - MLT1H1 LTR MaLR 0 590 496 296 132 0 0 chr4 31258304 31258357 -171069990 - LTR19A LTR ERV1 0 486 434 348 395 15 36 chr4 31258877 31259211 -171069136 + L1M3a LINE L1 1614 1940 -5546 3206 262 23 34 chr4 31259828 31260028 -171068319 + L1M3a LINE L1 1898 2099 -5466 1683 188 0 23 chr4 31260028 31260336 -171068011 + AluJb SINE Alu 1 301 -11 3206 262 23 34 chr4 31260336 31261317 -171067030 + L1M3a LINE L1 2099 3066 -4499 759 151 14 50 chr4 31261979 31262118 -171066229 + FRAM SINE Alu 25 158 -18 28 0 0 0 chr4 31263250 31263278 -171065069 + AT_rich Low_complexity Low_complexity 1 28 0 728 244 76 5 chr4 31263468 31263665 -171064682 + MLT1D LTR MaLR 286 496 -9 1010 65 30 6 chr4 31264254 31264422 -171063925 + (TTTC)n Simple_repeat Simple_repeat 4 175 0 416 267 60 84 chr4 31265215 31265500 -171062847 - LTR16A1 LTR ERVL -179 278 1 368 283 14 0 chr4 31266306 31266444 -171061903 - ERVL LTR ERVL -1747 4017 3878 784 216 6 28 chr4 31266449 31266625 -171061722 + AluJo SINE Alu 125 296 -16 2426 120 0 11 chr4 31266657 31267023 -171061324 - THE1B LTR MaLR -2 362 1 991 147 20 10 chr4 31267023 31267227 -171061120 - THE1B-int LTR MaLR 0 1580 1375 207 273 68 0 chr4 31268657 31268701 -171059646 - L2 LINE L2 -22 3291 3245 186 277 0 0 chr4 31269756 31269803 -171058544 + MIR SINE MIR 216 262 0 491 250 104 10 chr4 31269950 31270142 -171058205 - MLT1H1 LTR MaLR -14 541 332 2230 81 3 0 chr4 31271401 31271698 -171056649 + AluY SINE Alu 12 309 -2 533 331 8 52 chr4 31272082 31272330 -171056017 - MIR SINE MIR -19 243 7 385 178 0 14 chr4 31272386 31272459 -171055888 - MLT1G LTR MaLR 0 590 519 298 257 97 35 chr4 31272552 31272696 -171055651 - MLT1I LTR MaLR -245 285 133 449 190 0 0 chr4 31274327 31274406 -171053941 - L1PB1 LINE L1 -291 5860 5782 235 154 39 0 chr4 31274394 31274446 -171053901 + L1MC4 LINE L1 6653 6706 -1336 * 749 70 0 0 chr4 31274450 31274550 -171053797 + L1PB1 LINE L1 5875 5974 -177 361 298 0 0 chr4 31274784 31274878 -171053469 - MLT1I LTR MaLR -229 180 87 324 247 12 0 chr4 31275277 31275358 -171052989 + MER99 DNA DNA 617 698 -130 45 0 0 0 chr4 31275364 31275409 -171052938 + AT_rich Low_complexity Low_complexity 1 45 0 273 246 14 0 chr4 31275546 31275615 -171052732 + T-rich Low_complexity Low_complexity 4 73 0 30 0 0 0 chr4 31275624 31275654 -171052693 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr4 31277355 31277393 -171050954 + AT_rich Low_complexity Low_complexity 1 38 0 28 71 0 0 chr4 31278204 31278260 -171050087 + AT_rich Low_complexity Low_complexity 1 56 0 180 0 0 0 chr4 31278428 31278448 -171049899 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 255 289 155 0 chr4 31279108 31279205 -171049142 + L2 LINE L2 3199 3310 -3 440 357 40 32 chr4 31279216 31279468 -171048879 + L2 LINE L2 2828 3081 -232 2277 66 3 41 chr4 31279746 31280066 -171048281 + AluY SINE Alu 1 308 -3 214 273 169 13 chr4 31281103 31281180 -171047167 + L2 LINE L2 3225 3313 0 21 0 0 0 chr4 31282730 31282751 -171045596 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 31284484 31284511 -171043836 + AT_rich Low_complexity Low_complexity 1 27 0 453 319 53 18 chr4 31285392 31285561 -171042786 - MLT1J2 LTR MaLR -62 388 214 484 287 8 0 chr4 31285565 31285687 -171042660 - MLT1J1 LTR MaLR -323 123 1 377 171 14 0 chr4 31286536 31286606 -171041741 - L1MA6 LINE L1 -174 6126 6056 * 547 142 113 3 chr4 31286599 31286717 -171041630 + L1MA6 LINE L1 6152 6288 -24 198 0 0 0 chr4 31286824 31286846 -171041501 + (TA)n Simple_repeat Simple_repeat 2 23 0 3955 41 2 0 chr4 31286846 31287329 -171041018 - L1PA5 LINE L1 -1 6153 5670 1632 124 16 8 chr4 31287330 31287588 -171040759 + THE1C LTR MaLR 116 375 0 22 35 0 0 chr4 31287840 31287869 -171040478 + AT_rich Low_complexity Low_complexity 1 29 0 283 337 189 34 chr4 31288215 31288986 -171039361 + L2 LINE L2 1890 2780 -534 1461 109 0 5 chr4 31289408 31289618 -171038729 + THE1C LTR MaLR 139 347 -28 288 0 0 0 chr4 31290783 31290815 -171037532 + (TG)n Simple_repeat Simple_repeat 2 33 0 207 0 0 0 chr4 31292223 31292246 -171036101 + (TA)n Simple_repeat Simple_repeat 1 23 0 272 170 0 5 chr4 31292247 31292331 -171036016 - THE1B LTR MaLR -248 127 1 247 327 117 12 chr4 31292381 31292543 -171035804 - MIR SINE MIR -48 214 36 498 219 36 55 chr4 31292586 31292805 -171035542 - L1MC5 LINE L1 -46 7915 7701 730 189 15 0 chr4 31292826 31292958 -171035389 - Tigger2 DNA MER2_type -10 2708 2575 3931 161 57 52 chr4 31292975 31294089 -171034258 + L1PA16 LINE L1 4984 6099 -67 234 0 0 0 chr4 31294832 31294858 -171033489 + (TA)n Simple_repeat Simple_repeat 2 27 0 189 0 0 0 chr4 31294857 31294878 -171033469 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 204 67 0 0 chr4 31298200 31298230 -171030117 + (TA)n Simple_repeat Simple_repeat 2 31 0 283 311 54 0 chr4 31298610 31298684 -171029663 + L2 LINE L2 3232 3309 -4 323 299 65 92 chr4 31299283 31299544 -171028803 + MIR SINE MIR 3 256 -6 329 157 29 10 chr4 31299911 31300013 -171028334 + GA-rich Low_complexity Low_complexity 2 105 0 280 353 21 26 chr4 31301632 31301822 -171026525 - MIR SINE MIR -71 191 3 276 30 0 0 chr4 31301964 31301997 -171026350 + (CA)n Simple_repeat Simple_repeat 2 34 0 1263 177 15 57 chr4 31302013 31302278 -171026069 - AluJo SINE Alu -25 287 34 1837 93 30 36 chr4 31302445 31302746 -171025601 - THE1C LTR MaLR -76 299 1 230 314 108 10 chr4 31302771 31302873 -171025474 - MLT1I LTR MaLR -197 212 101 398 271 77 45 chr4 31302995 31303242 -171025105 - L1ME LINE L1 -648 5516 5262 1465 172 35 56 chr4 31303413 31303732 -171024615 + AluJo SINE Alu 1 312 0 762 296 107 26 chr4 31304068 31305080 -171023267 - L1ME LINE L1 -1644 4502 3409 226 230 130 25 chr4 31305399 31305560 -171022787 - L1ME LINE L1 -3191 2955 2778 326 301 7 37 chr4 31305601 31305737 -171022610 + MER94 DNA DNA 1 132 -2 238 222 0 0 chr4 31305770 31305824 -171022523 - L1ME LINE L1 -3447 2699 2646 499 321 38 5 chr4 31306195 31306379 -171021968 + LTR33 LTR ERVL 32 221 -300 1478 173 21 25 chr4 31306986 31307292 -171021055 + AluJo SINE Alu 1 305 0 329 344 133 11 chr4 31308265 31308445 -171019902 + MIR3 SINE MIR 1 202 -6 230 258 75 69 chr4 31308875 31309034 -171019313 + MLT1J2 LTR MaLR 264 423 -27 241 216 420 0 chr4 31309589 31309677 -171018670 + L2 LINE L2 3181 3305 -8 224 30 30 0 chr4 31310149 31310182 -171018165 + (TG)n Simple_repeat Simple_repeat 2 35 0 1750 191 18 6 chr4 31310209 31310544 -171017803 - MER44D DNA MER2_type 0 609 1 283 200 0 0 chr4 31311547 31311602 -171016745 + L1MA6 LINE L1 3098 3152 -4413 * 2249 232 51 3 chr4 31311598 31312210 -171016137 + L1MA6 LINE L1 3798 4438 -3127 5155 165 26 34 chr4 31312282 31314291 -171014056 + L1MA6 LINE L1 5725 7718 -1 22 35 0 0 chr4 31314357 31314386 -171013961 + AT_rich Low_complexity Low_complexity 1 29 0 1213 274 67 42 chr4 31314574 31315008 -171013339 + LTR40a LTR ERVL 70 514 -5 1980 164 0 0 chr4 31315987 31316285 -171012062 + AluSx SINE Alu 6 303 -9 21 36 0 0 chr4 31316597 31316625 -171011722 + AT_rich Low_complexity Low_complexity 1 28 0 438 20 0 0 chr4 31316702 31316753 -171011594 + (TG)n Simple_repeat Simple_repeat 2 52 0 27 49 0 0 chr4 31316786 31316827 -171011520 + AT_rich Low_complexity Low_complexity 1 41 0 963 216 11 82 chr4 31317564 31317846 -171010501 - MLT1A1 LTR MaLR -103 262 1 282 242 15 15 chr4 31319280 31319346 -171009001 - MER81 DNA DNA -44 70 5 1148 128 5 35 chr4 31319987 31320190 -171008157 + AluSx SINE Alu 1 197 -115 893 163 0 14 chr4 31320350 31320497 -171007850 + AluSg/x SINE Alu 131 275 -37 204 40 0 0 chr4 31320503 31320528 -171007819 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 3410 179 18 5 chr4 31320546 31321176 -171007171 + L1MB1 LINE L1 5477 6114 -75 1251 204 129 67 chr4 31321189 31321592 -171006755 + MSTB1 LTR MaLR 5 432 0 805 174 14 82 chr4 31321597 31321804 -171006543 + L1MA10 LINE L1 6124 6316 -18 25 31 0 0 chr4 31321802 31321834 -171006513 + AT_rich Low_complexity Low_complexity 1 32 0 * 2024 128 10 0 chr4 31322739 31323036 -171005311 - AluSx SINE Alu -12 300 1 25 51 0 0 chr4 31323103 31323142 -171005205 + AT_rich Low_complexity Low_complexity 1 39 0 1448 207 87 7 chr4 31323142 31323451 -171004896 + MER2 DNA MER2_type 2 335 -10 216 0 0 0 chr4 31324664 31324688 -171003659 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 370 292 29 53 chr4 31325637 31325704 -171002643 + MLT1J LTR MaLR 1 68 -443 1172 254 104 29 chr4 31325704 31326185 -171002162 + MLT2B1 LTR ERVL 2 518 -2 370 292 29 53 chr4 31326185 31326288 -171002059 + MLT1J LTR MaLR 68 167 -344 183 80 0 0 chr4 31326984 31327009 -171001338 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 360 43 0 0 chr4 31327239 31327285 -171001062 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 23 0 0 0 chr4 31327891 31327914 -171000433 + AT_rich Low_complexity Low_complexity 1 23 0 323 313 33 20 chr4 31328241 31328391 -170999956 + MLT1I LTR MaLR 15 166 -243 929 211 88 32 chr4 31328540 31328578 -170999769 - MSTA LTR MaLR 0 428 394 2380 63 0 0 chr4 31328578 31328879 -170999468 + AluY SINE Alu 1 301 -10 929 211 88 32 chr4 31328879 31329091 -170999256 - MSTA LTR MaLR -34 394 164 193 257 50 59 chr4 31329394 31329495 -170998852 - L2 LINE L2 -523 2791 2692 1910 155 0 7 chr4 31329898 31330202 -170998145 - AluSx SINE Alu -10 302 1 1922 165 129 5 chr4 31331386 31331767 -170996580 - MSTA LTR MaLR 0 428 1 332 325 57 45 chr4 31331849 31332006 -170996341 - MLT1K LTR MaLR -368 220 62 22 0 0 0 chr4 31332267 31332289 -170996058 + AT_rich Low_complexity Low_complexity 1 22 0 895 293 44 20 chr4 31332289 31332792 -170995555 + L2 LINE L2 2770 3280 -33 186 103 0 0 chr4 31332849 31332878 -170995469 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 1854 160 10 0 chr4 31332979 31333286 -170995061 + AluSx SINE Alu 1 310 -2 2172 144 3 29 chr4 31335140 31335514 -170992833 - THE1B LTR MaLR 0 364 1 2312 236 8 8 chr4 31335645 31336165 -170992182 - MLT2B1 LTR ERVL 0 520 1 464 324 11 16 chr4 31337369 31337551 -170990796 + MIR SINE MIR 80 260 -2 1475 256 124 4 chr4 31337849 31338299 -170990048 - MLT1D LTR MaLR 0 505 2 891 278 48 11 chr4 31338852 31339125 -170989222 - LTR67 LTR ERVL -2 555 273 231 300 36 55 chr4 31340096 31340206 -170988141 + MIR SINE MIR 86 193 -69 1541 214 63 24 chr4 31340592 31340971 -170987376 - MSTD LTR MaLR -2 394 1 28 48 0 0 chr4 31341215 31341257 -170987090 + AT_rich Low_complexity Low_complexity 1 42 0 23 68 0 0 chr4 31341337 31341381 -170986966 + AT_rich Low_complexity Low_complexity 1 44 0 198 390 138 5 chr4 31341498 31341716 -170986631 + MIR SINE MIR 13 259 -3 29 0 0 0 chr4 31341718 31341747 -170986600 + AT_rich Low_complexity Low_complexity 1 29 0 345 320 22 31 chr4 31342456 31342683 -170985664 + GA-rich Low_complexity Low_complexity 1 225 0 269 194 0 28 chr4 31342935 31343007 -170985340 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 23 33 0 0 chr4 31343552 31343582 -170984765 + AT_rich Low_complexity Low_complexity 1 30 0 250 371 28 28 chr4 31343762 31343905 -170984442 - MIR SINE MIR -115 147 5 2435 181 7 5 chr4 31345502 31345939 -170982408 - MER44D DNA MER2_type -36 569 77 22 56 0 0 chr4 31346537 31346573 -170981774 + AT_rich Low_complexity Low_complexity 1 36 0 1422 195 82 22 chr4 31346703 31347021 -170981326 - L1MC1 LINE L1 0 6333 5997 268 114 66 0 chr4 31347040 31347100 -170981247 - Alu SINE Alu -11 291 247 216 0 0 0 chr4 31347149 31347173 -170981174 + (TA)n Simple_repeat Simple_repeat 2 25 0 801 212 0 54 chr4 31347185 31347369 -170980978 - AluJb SINE Alu -30 282 109 282 143 0 0 chr4 31347808 31347857 -170980490 + (CA)n Simple_repeat Simple_repeat 2 50 0 291 200 0 47 chr4 31348081 31348166 -170980181 + CT-rich Low_complexity Low_complexity 3 83 0 297 323 24 16 chr4 31348663 31348787 -170979560 - MER5A DNA MER1_type -31 158 34 3409 266 40 45 chr4 31348982 31350430 -170977917 + L1MCb LINE L1 3 1417 -4851 337 234 203 16 chr4 31350477 31350605 -170977742 - MLT1J LTR MaLR -327 184 33 254 279 0 0 chr4 31352306 31352374 -170975973 + T-rich Low_complexity Low_complexity 1 68 0 383 356 151 28 chr4 31352981 31353413 -170974934 + L2 LINE L2 2364 2848 -466 189 314 220 25 chr4 31353705 31353823 -170974524 + L2 LINE L2 3173 3313 0 722 325 77 6 chr4 31353931 31354270 -170974077 + L2 LINE L2 2339 2701 -613 195 100 0 0 chr4 31354927 31354957 -170973390 + (TA)n Simple_repeat Simple_repeat 2 31 0 685 294 76 61 chr4 31354957 31355500 -170972847 + L2 LINE L2 2687 3244 -69 2275 162 30 16 chr4 31355500 31355939 -170972408 - MER65A LTR ERV1 0 445 1 685 294 76 61 chr4 31355939 31355983 -170972364 + L2 LINE L2 3244 3286 -27 378 0 0 0 chr4 31356925 31356967 -170971380 + (TG)n Simple_repeat Simple_repeat 2 43 0 596 211 16 0 chr4 31357192 31357320 -170971027 - MER39 LTR ERV1 -21 686 557 * 1560 194 15 56 chr4 31357318 31357659 -170970688 + MER7A DNA MER2_type 21 345 -1 24 0 0 0 chr4 31358218 31358242 -170970105 + AT_rich Low_complexity Low_complexity 1 24 0 1535 84 21 8 chr4 31358334 31358571 -170969776 - L1PA5 LINE L1 -11 6143 5904 255 368 40 16 chr4 31359098 31359223 -170969124 + MIR SINE MIR 11 138 -124 996 207 153 18 chr4 31360374 31360649 -170967698 + L1MB8 LINE L1 5857 6168 -16 229 226 0 0 chr4 31360800 31360853 -170967494 + Charlie8 DNA MER1_type 74 126 -2291 398 101 14 0 chr4 31360860 31360929 -170967418 + (GGAA)n Simple_repeat Simple_repeat 2 71 0 8512 127 34 37 chr4 31361271 31362687 -170965660 - THE1B-int LTR MaLR -169 1411 1 2372 119 14 3 chr4 31362687 31363047 -170965300 - THE1B LTR MaLR 0 364 1 1277 169 9 0 chr4 31363146 31363359 -170964988 + AluSg/x SINE Alu 81 295 -17 639 349 80 27 chr4 31363527 31364005 -170964342 - ERVL LTR ERVL -2207 3557 3055 388 368 33 4 chr4 31364218 31364535 -170963812 - ERVL LTR ERVL -2219 2777 2446 464 328 58 6 chr4 31364703 31364877 -170963470 - ERVL LTR ERVL -3357 2407 2225 731 313 52 48 chr4 31364939 31365440 -170962907 - ERVL LTR ERVL -2905 2091 1589 1332 364 45 35 chr4 31365446 31365676 -170962671 - ERVL LTR ERVL -3511 1485 1259 640 229 60 60 chr4 31365676 31365894 -170962453 + MER20 DNA MER1_type 1 218 -1 1332 364 45 35 chr4 31365894 31366662 -170961685 - ERVL LTR ERVL -3737 1259 477 1345 246 86 25 chr4 31366718 31367113 -170961234 + LTR52 LTR ERVL 3 421 0 345 387 47 7 chr4 31367213 31367492 -170960855 - ERVL LTR ERVL -4706 290 1 881 265 88 20 chr4 31367516 31367822 -170960525 - LTR16A1 LTR ERVL -22 435 109 447 362 31 18 chr4 31367955 31368179 -170960168 - L2 LINE L2 -389 2925 2699 1313 215 85 74 chr4 31369873 31370334 -170958013 + MLT1C LTR MaLR 2 467 0 209 189 0 0 chr4 31370781 31370818 -170957529 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 2128 230 77 4 chr4 31371282 31371803 -170956544 + L1MCa LINE L1 29 587 -5839 831 172 89 17 chr4 31371789 31371969 -170956378 + L1MC/D LINE L1 5414 5606 -727 * 303 307 38 46 chr4 31372139 31372377 -170955970 - L1MC5 LINE L1 -384 7577 7342 364 255 94 52 chr4 31372488 31372755 -170955592 - MLT1J LTR MaLR -2 509 232 310 143 0 0 chr4 31373055 31373104 -170955243 + MADE1 DNA Mariner 32 80 0 22 35 0 0 chr4 31373354 31373383 -170954964 + AT_rich Low_complexity Low_complexity 1 29 0 246 250 0 0 chr4 31374294 31374354 -170953993 + (TA)n Simple_repeat Simple_repeat 2 61 0 309 196 80 45 chr4 31374465 31374828 -170953519 + L1MA9 LINE L1 5341 5690 -622 2009 112 11 3 chr4 31374828 31375115 -170953232 - AluSc SINE Alu -20 289 1 309 196 80 45 chr4 31375115 31375571 -170952776 + L1MA9 LINE L1 5690 6276 -36 2349 74 0 13 chr4 31376398 31376710 -170951637 - AluY SINE Alu -3 308 1 206 125 0 25 chr4 31377491 31377531 -170950816 + (TA)n Simple_repeat Simple_repeat 2 40 0 270 233 0 27 chr4 31377561 31377634 -170950713 + (TA)n Simple_repeat Simple_repeat 1 71 0 23 33 0 0 chr4 31377917 31377947 -170950400 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr4 31379202 31379223 -170949124 + (T)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr4 31379920 31379955 -170948392 + AT_rich Low_complexity Low_complexity 1 35 0 2032 178 90 2 chr4 31379963 31380385 -170947962 - L1PB4 LINE L1 -17 6139 5681 616 206 67 67 chr4 31380634 31380814 -170947533 + MLT1D LTR MaLR 12 191 -314 420 195 0 0 chr4 31381072 31381154 -170947193 - AluJ/FRAM SINE Alu -10 302 221 1847 173 3 3 chr4 31381292 31381621 -170946726 + L1PA15 LINE L1 5835 6163 -2 992 222 28 4 chr4 31381843 31382091 -170946256 + MER63 DNA MER1_type 809 1062 0 30 97 0 0 chr4 31382299 31382392 -170945955 + AT_rich Low_complexity Low_complexity 1 93 0 1317 259 37 12 chr4 31382911 31383313 -170945034 - L1ME1 LINE L1 -207 5959 5548 2973 90 5 0 chr4 31383316 31383726 -170944621 - L1PA7 LINE L1 0 6154 5743 6195 94 2 1 chr4 31383726 31384599 -170943748 + L1P LINE L1 1652 2525 -3621 265 301 27 6 chr4 31384596 31384714 -170943633 - L1ME1 LINE L1 -607 5557 5436 * 1306 258 164 48 chr4 31384821 31385214 -170943133 - L1ME1 LINE L1 -735 5427 5081 276 30 0 0 chr4 31385214 31385247 -170943100 + (TG)n Simple_repeat Simple_repeat 2 34 0 1306 258 164 48 chr4 31385247 31385838 -170942509 - L1ME1 LINE L1 -1081 5081 4324 23 86 0 0 chr4 31385966 31386024 -170942323 + AT_rich Low_complexity Low_complexity 1 58 0 1109 184 81 16 chr4 31386635 31386894 -170941453 + MER39 LTR ERV1 3 234 -419 1338 104 56 30 chr4 31386895 31387126 -170941221 + MER39 LTR ERV1 340 576 -131 933 247 83 106 chr4 31437141 31437668 -170890679 + MLT1E2 LTR MaLR 15 529 -97 240 86 0 0 chr4 31437792 31437827 -170890520 + (TG)n Simple_repeat Simple_repeat 2 36 0 1313 250 67 45 chr4 31437999 31438463 -170889884 - MLT1D LTR MaLR -27 478 5 934 331 22 12 chr4 31439337 31439686 -170888661 + MLT1G LTR MaLR 212 584 -11 729 147 62 0 chr4 31440177 31440306 -170888041 + FRAM SINE Alu 28 164 -12 26 0 0 0 chr4 31440434 31440460 -170887887 + AT_rich Low_complexity Low_complexity 1 26 0 200 372 124 13 chr4 31440590 31440824 -170887523 + L2 LINE L2 2970 3229 -84 22 0 0 0 chr4 31441852 31441874 -170886473 + AT_rich Low_complexity Low_complexity 1 22 0 33 0 0 0 chr4 31441975 31442008 -170886339 + AT_rich Low_complexity Low_complexity 1 33 0 362 254 17 51 chr4 31442356 31442474 -170885873 + MIR SINE MIR 133 246 -16 23 20 8 0 chr4 31442989 31443059 -170885288 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 31444483 31444506 -170883841 + AT_rich Low_complexity Low_complexity 1 23 0 187 316 110 15 chr4 31444784 31444920 -170883427 + MIR SINE MIR 2 150 -112 392 300 75 50 chr4 31445461 31445621 -170882726 - L2 LINE L2 0 3272 3109 731 253 50 84 chr4 31446018 31446378 -170881969 - L1ME1 LINE L1 -36 6130 5780 1209 83 30 0 chr4 31447026 31447194 -170881153 - L1PA7 LINE L1 -1 6153 5981 7501 85 0 23 chr4 31447194 31448701 -170879646 - L1PA7 LINE L1 -398 5756 4290 2145 116 3 3 chr4 31449062 31449354 -170878993 + AluSc SINE Alu 1 292 -17 188 306 41 0 chr4 31449596 31449645 -170878702 - L2 LINE L2 -269 3044 2994 1036 254 93 48 chr4 31452659 31453189 -170875158 - MLT1F1 LTR MaLR 0 567 13 192 356 75 29 chr4 31454535 31454709 -170873638 + MER5A DNA MER1_type 7 188 -1 1882 159 122 8 chr4 31454780 31455164 -170873183 - MSTA LTR MaLR 0 428 1 408 279 155 18 chr4 31455253 31455472 -170872875 - MIR SINE MIR -12 250 2 271 302 36 107 chr4 31456223 31456531 -170871816 + MLT1L LTR MaLR 167 452 -163 29 0 0 0 chr4 31456654 31456683 -170871664 + AT_rich Low_complexity Low_complexity 1 29 0 218 49 0 73 chr4 31457572 31457613 -170870734 + (A)n Simple_repeat Simple_repeat 1 38 0 22 35 0 0 chr4 31457717 31457746 -170870601 + AT_rich Low_complexity Low_complexity 1 29 0 2169 128 0 0 chr4 31459158 31459454 -170868893 + AluSg SINE Alu 1 296 -14 929 203 72 56 chr4 31459825 31460076 -170868271 - LTR8A LTR ERV1 0 727 473 261 0 0 0 chr4 31460478 31460507 -170867840 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 387 98 0 0 chr4 31460997 31461058 -170867289 + (CA)n Simple_repeat Simple_repeat 1 61 0 407 340 90 9 chr4 31461714 31461926 -170866421 + MIR SINE MIR 23 251 -11 394 346 49 45 chr4 31462068 31462334 -170866013 - L2 LINE L2 0 3313 3047 618 307 94 12 chr4 31462348 31462602 -170865745 - L2 LINE L2 -576 2738 2464 21 57 0 0 chr4 31463355 31463390 -170864957 + AT_rich Low_complexity Low_complexity 1 35 0 216 196 143 0 chr4 31464340 31464396 -170863951 - MIR SINE MIR -105 157 94 1333 120 34 0 chr4 31464510 31464718 -170863629 - L1PA10 LINE L1 -3 6165 5951 1364 194 35 1 chr4 31465614 31465938 -170862409 + MLT2C2 LTR ERVL 1 349 -48 25 31 0 0 chr4 31466130 31466162 -170862185 + AT_rich Low_complexity Low_complexity 1 32 0 274 355 39 55 chr4 31466201 31466457 -170861890 + MIR SINE MIR 11 262 0 9095 205 33 38 chr4 31466595 31467095 -170861252 + L1MB1 LINE L1 3041 3542 -2647 1459 192 35 21 chr4 31467095 31467381 -170860966 - AluJo SINE Alu -22 290 1 9095 205 33 38 chr4 31467381 31467614 -170860733 + L1MB1 LINE L1 3542 3775 -2414 1750 184 47 11 chr4 31467614 31467973 -170860374 + THE1C LTR MaLR 1 372 -3 9095 205 33 38 chr4 31467973 31470375 -170857972 + L1MB1 LINE L1 3775 6163 -26 235 227 15 15 chr4 31470382 31470448 -170857899 + (CAT)n Simple_repeat Simple_repeat 2 67 0 432 250 15 0 chr4 31470454 31470586 -170857761 + L1MA10 LINE L1 6180 6313 -21 1576 254 22 51 chr4 31470591 31471178 -170857169 + L1ME1 LINE L1 5592 6161 -5 21 36 0 0 chr4 31471546 31471574 -170856773 + AT_rich Low_complexity Low_complexity 1 28 0 228 214 0 0 chr4 31473497 31473539 -170854808 + CT-rich Low_complexity Low_complexity 2 43 0 25 31 0 0 chr4 31473594 31473626 -170854721 + AT_rich Low_complexity Low_complexity 1 32 0 323 304 108 6 chr4 31474023 31474181 -170854166 + MIR SINE MIR 78 251 -11 1877 178 2 63 chr4 31474256 31474671 -170853676 + MLT1B LTR MaLR 1 390 0 572 133 8 0 chr4 31474958 31475078 -170853269 + (TA)n Simple_repeat Simple_repeat 2 122 0 240 403 13 27 chr4 31475694 31475843 -170852504 + L2 LINE L2 35 181 -3133 572 294 36 44 chr4 31475880 31476128 -170852219 + L2 LINE L2 3068 3313 0 1608 181 7 10 chr4 31476503 31476802 -170851545 + AluJo SINE Alu 1 298 -14 1793 83 0 42 chr4 31477139 31477404 -170850943 - L1PA15 LINE L1 -8 6157 5904 22 0 0 0 chr4 31477549 31477571 -170850776 + AT_rich Low_complexity Low_complexity 1 22 0 614 306 65 46 chr4 31477697 31478069 -170850278 - L2 LINE L2 -18 3295 2917 733 277 9 48 chr4 31479947 31480178 -170848169 - MER58A DNA MER1_type 0 224 3 321 342 102 30 chr4 31480208 31480600 -170847747 - L2 LINE L2 -159 3154 2749 340 328 9 0 chr4 31480655 31480771 -170847576 + MIR SINE MIR 146 262 0 27 29 0 0 chr4 31480813 31480847 -170847500 + AT_rich Low_complexity Low_complexity 1 34 0 22 70 0 0 chr4 31481107 31481150 -170847197 + AT_rich Low_complexity Low_complexity 1 43 0 2096 136 3 0 chr4 31481191 31481493 -170846854 - AluSx SINE Alu -9 303 1 27 0 0 0 chr4 31481504 31481531 -170846816 + AT_rich Low_complexity Low_complexity 1 27 0 368 227 13 0 chr4 31482122 31482197 -170846150 + LTR16C LTR ERVL 412 487 -4 2243 57 0 4 chr4 31482238 31482551 -170845796 - AluSc SINE Alu 0 312 1 201 39 0 0 chr4 31483499 31483525 -170844822 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 222 327 53 44 chr4 31484390 31484503 -170843844 - L3 LINE CR1 -35 1542 1429 23 0 0 0 chr4 31485527 31485550 -170842797 + AT_rich Low_complexity Low_complexity 1 23 0 265 340 58 0 chr4 31485811 31485914 -170842433 - L2 LINE L2 -1 3271 3163 21 0 0 0 chr4 31488555 31488576 -170839771 + AT_rich Low_complexity Low_complexity 1 21 0 194 313 94 42 chr4 31489632 31489728 -170838619 - MER5A DNA MER1_type -1 188 88 * 211 341 8 45 chr4 31489655 31489787 -170838560 + MER5A DNA MER1_type 35 161 -28 477 349 107 5 chr4 31490001 31490216 -170838131 + MIR SINE MIR 8 244 -18 643 302 79 34 chr4 31490325 31490616 -170837731 + L2 LINE L2 2967 3270 -43 267 333 31 0 chr4 31490780 31490876 -170837471 - MER5A DNA MER1_type -77 112 14 10298 159 40 13 chr4 31490876 31492550 -170835797 - Tigger1 DNA MER2_type -515 1903 173 198 0 0 0 chr4 31492550 31492572 -170835775 + (TAA)n Simple_repeat Simple_repeat 3 24 0 10298 159 40 13 chr4 31492572 31492750 -170835597 - Tigger1 DNA MER2_type -2245 173 1 1999 130 53 28 chr4 31493304 31493659 -170834688 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr4 31496263 31496287 -170832060 + AT_rich Low_complexity Low_complexity 1 24 0 28 61 0 0 chr4 31496484 31496533 -170831814 + AT_rich Low_complexity Low_complexity 1 49 0 961 242 74 17 chr4 31496576 31496589 -170831758 - L1MA6 LINE L1 -7 6293 6282 816 118 0 15 chr4 31496589 31496725 -170831622 - L1PB1 LINE L1 0 6151 6018 961 242 74 17 chr4 31496725 31497008 -170831339 - L1MA6 LINE L1 -18 6282 5980 213 108 0 0 chr4 31497059 31497096 -170831251 + (TA)n Simple_repeat Simple_repeat 2 38 0 297 0 0 0 chr4 31497507 31497540 -170830807 + (TC)n Simple_repeat Simple_repeat 2 34 0 225 0 0 0 chr4 31497539 31497564 -170830783 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 2749 117 22 0 chr4 31497564 31497974 -170830373 - L1MA6 LINE L1 -363 5937 5519 2145 247 24 28 chr4 31497971 31498643 -170829704 - L1M2c LINE L1 -4640 2149 1481 * 874 347 69 27 chr4 31499144 31499697 -170828650 - L1M2c LINE L1 -6207 582 7 189 269 77 0 chr4 31500760 31500812 -170827535 + L2 LINE L2 3190 3245 -68 227 200 56 56 chr4 31500883 31500973 -170827374 + MLT1J1 LTR MaLR 71 160 -286 838 272 145 53 chr4 31501274 31501873 -170826474 - MLT1E1 LTR MaLR 0 654 1 405 204 10 13 chr4 31502919 31503038 -170825309 + L1MD3 LINE L1 6849 7015 -847 1610 238 87 2 chr4 31503040 31503489 -170824858 + L1MD3 LINE L1 7349 7835 -160 2077 121 7 0 chr4 31503506 31503795 -170824552 - AluSx SINE Alu -19 293 3 1961 139 152 11 chr4 31503808 31504183 -170824164 - MSTA LTR MaLR 0 428 1 326 226 78 9 chr4 31504338 31504453 -170823894 + L1MD3 LINE L1 7863 7985 -10 531 270 131 36 chr4 31504738 31504960 -170823387 + MIR SINE MIR 8 250 -12 242 294 199 35 chr4 31505037 31505238 -170823109 - MIR SINE MIR -6 256 23 23 33 0 0 chr4 31505351 31505381 -170822966 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr4 31506422 31506452 -170821895 + AT_rich Low_complexity Low_complexity 1 30 0 1981 141 0 3 chr4 31506782 31507113 -170821234 + AluSx SINE Alu 1 312 0 325 167 97 14 chr4 31507233 31507305 -170821042 + LTR8 LTR ERV1 1 78 -613 188 290 110 50 chr4 31507685 31507785 -170820562 - L2 LINE L2 -276 3037 2932 21 82 0 0 chr4 31508046 31508095 -170820252 + AT_rich Low_complexity Low_complexity 1 49 0 321 205 391 0 chr4 31508264 31508484 -170819863 + L1MD3 LINE L1 6959 7097 -688 454 281 9 0 chr4 31508484 31508598 -170819749 + MLT1F1 LTR MaLR 17 131 -436 1989 240 32 14 chr4 31508600 31509159 -170819188 + L1MD3 LINE L1 7410 7978 -17 360 341 50 17 chr4 31509412 31509591 -170818756 + MLT1E LTR MaLR 1 185 -408 295 167 14 14 chr4 31509604 31509676 -170818671 + CT-rich Low_complexity Low_complexity 6 77 0 24 53 0 0 chr4 31510290 31510328 -170818019 + AT_rich Low_complexity Low_complexity 1 38 0 555 189 69 62 chr4 31511733 31511930 -170816417 + MIR SINE MIR 1 200 -62 21 57 0 0 chr4 31511987 31512022 -170816325 + AT_rich Low_complexity Low_complexity 1 35 0 306 267 78 35 chr4 31512119 31512235 -170816112 - L1ME4a LINE L1 -233 5888 5768 248 305 141 8 chr4 31512255 31512383 -170815964 + MIR SINE MIR 118 262 0 21 0 0 0 chr4 31512926 31512947 -170815400 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 31513262 31513283 -170815064 + AT_rich Low_complexity Low_complexity 1 21 0 245 311 74 27 chr4 31513935 31513963 -170814384 - MLT1K LTR MaLR -164 424 399 2247 101 0 0 chr4 31513963 31514260 -170814087 - AluSg1 SINE Alu -12 297 1 245 311 74 27 chr4 31514260 31514379 -170813968 - MLT1K LTR MaLR -189 399 270 823 125 7 28 chr4 31514505 31514649 -170813698 + MLT1A1 LTR MaLR 11 151 -214 969 256 133 67 chr4 31514703 31515750 -170812597 + L1M4 LINE L1 4492 5607 -577 1585 128 15 4 chr4 31515750 31516016 -170812331 + L1PA13 LINE L1 5888 6156 -7 622 284 48 14 chr4 31516092 31516443 -170811904 + L1ME3A LINE L1 5469 5881 -289 218 169 17 34 chr4 31516594 31516653 -170811694 + CT-rich Low_complexity Low_complexity 2 59 0 415 194 58 22 chr4 31516769 31516908 -170811439 - L1MC2 LINE L1 -1 6343 6200 1407 181 10 51 chr4 31516911 31517204 -170811143 + MSTB LTR MaLR 3 283 -143 644 179 0 8 chr4 31517204 31517321 -170811026 + AluJ SINE Alu 1 116 -186 496 195 0 0 chr4 31517321 31517408 -170810939 + AluJ SINE Alu 168 254 -58 5091 46 3 3 chr4 31517542 31518175 -170810172 + L1PA5 LINE L1 5517 6149 -5 224 317 40 29 chr4 31519186 31519317 -170809030 - MIR SINE MIR -65 143 28 376 341 7 7 chr4 31519340 31519478 -170808869 - MIR SINE MIR -10 252 115 21 36 0 0 chr4 31519753 31519781 -170808566 + AT_rich Low_complexity Low_complexity 1 28 0 251 326 0 21 chr4 31519876 31519971 -170808376 + MER5A DNA MER1_type 11 103 -86 22 35 0 0 chr4 31520092 31520121 -170808226 + AT_rich Low_complexity Low_complexity 1 29 0 2374 67 0 10 chr4 31520476 31520788 -170807559 - AluY SINE Alu -2 309 1 22 0 0 0 chr4 31523043 31523065 -170805282 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 31523751 31523776 -170804571 + AT_rich Low_complexity Low_complexity 1 25 0 213 319 0 53 chr4 31524279 31524373 -170803974 + MIR SINE MIR 162 250 -12 67 42 0 0 chr4 31524819 31524914 -170803433 + AT_rich Low_complexity Low_complexity 1 95 0 265 331 53 30 chr4 31525412 31525545 -170802802 + MIR SINE MIR 1 136 -126 31 26 0 0 chr4 31525877 31525915 -170802432 + AT_rich Low_complexity Low_complexity 1 38 0 22 70 0 0 chr4 31526210 31526253 -170802094 + AT_rich Low_complexity Low_complexity 1 43 0 264 212 30 0 chr4 31526382 31526454 -170801893 + CT-rich Low_complexity Low_complexity 1 74 0 * 383 340 28 28 chr4 31526447 31526659 -170801688 - HAL1b LINE L1 -861 487 276 22 0 0 0 chr4 31527153 31527175 -170801172 + AT_rich Low_complexity Low_complexity 1 22 0 256 254 45 0 chr4 31527483 31527550 -170800797 - HAL1 LINE L1 -829 1678 1609 329 275 94 7 chr4 31527552 31527701 -170800646 - MLT1I LTR MaLR 0 590 429 2074 144 0 0 chr4 31528858 31529170 -170799177 + AluSx SINE Alu 1 312 0 30302 117 13 62 chr4 31529709 31536176 -170792171 + L1PA7 LINE L1 12 6143 -11 198 0 0 0 chr4 31536179 31536201 -170792146 + (TTAAA)n Simple_repeat Simple_repeat 4 25 0 988 312 73 38 chr4 31536268 31536819 -170791528 + L2 LINE L2 2381 2950 -364 1375 201 17 24 chr4 31538464 31538758 -170789589 + AluJb SINE Alu 3 294 -18 222 150 0 0 chr4 31539110 31539150 -170789197 + (ATG)n Simple_repeat Simple_repeat 2 41 0 446 273 0 0 chr4 31539155 31539254 -170789093 - MLT1E LTR MaLR -434 159 61 697 217 0 0 chr4 31539934 31540072 -170788275 - AluJb SINE Alu -19 293 156 1382 254 83 48 chr4 31540831 31541563 -170786784 + Zaphod DNA AcHobo 217 974 -3057 985 252 122 3 chr4 31541593 31541962 -170786385 + Zaphod DNA AcHobo 3611 4023 -8 465 278 133 44 chr4 31543525 31543705 -170784642 - MIR SINE MIR -27 235 40 208 237 0 0 chr4 31543716 31543754 -170784593 + polypurine Low_complexity Low_complexity 5 42 0 225 372 74 25 chr4 31544079 31544200 -170784147 + L2 LINE L2 3134 3260 -12 22 0 0 0 chr4 31544211 31544233 -170784114 + AT_rich Low_complexity Low_complexity 1 22 0 322 315 0 37 chr4 31544320 31544428 -170783919 - L2 LINE L2 0 3272 3169 781 293 34 16 chr4 31545403 31545724 -170782623 + L1ME4a LINE L1 5583 5909 -212 391 305 50 47 chr4 31545835 31546213 -170782134 - MLT1I LTR MaLR -12 397 22 1044 279 33 89 chr4 31546572 31547146 -170781201 - MER34 LTR ERV1 0 542 1 709 227 0 0 chr4 31547263 31547395 -170780952 + FLAM_C SINE Alu 2 133 0 426 115 39 0 chr4 31547403 31547481 -170780866 + AluS SINE Alu 232 312 0 781 191 0 0 chr4 31547702 31547833 -170780514 + FLAM_A SINE Alu 6 136 -6 209 54 0 89 chr4 31547858 31547914 -170780433 + (TAA)n Simple_repeat Simple_repeat 1 51 0 435 307 199 21 chr4 31548141 31548405 -170779942 + L2 LINE L2 2688 3000 -313 225 122 24 0 chr4 31548672 31548713 -170779634 - L1PBa LINE L1 -4410 2453 2412 425 303 16 0 chr4 31548982 31549104 -170779243 + MER58A DNA MER1_type 1 124 0 386 264 22 0 chr4 31549143 31549234 -170779113 + MER58A DNA MER1_type 127 219 -5 189 0 0 0 chr4 31549282 31549303 -170779044 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 207 191 48 0 chr4 31549451 31549493 -170778854 + L2 LINE L2 3219 3262 -10 742 237 51 0 chr4 31550553 31550730 -170777617 - MER5A DNA MER1_type -3 186 1 809 264 57 4 chr4 31551430 31551657 -170776690 + MER8 DNA MER2_type 1 239 0 1891 141 17 0 chr4 31552130 31552428 -170775919 + AluSx SINE Alu 4 306 -6 205 83 0 28 chr4 31552685 31552721 -170775626 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 24 53 0 0 chr4 31552765 31552803 -170775544 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr4 31553343 31553371 -170774976 + AT_rich Low_complexity Low_complexity 1 28 0 587 241 5 98 chr4 31553450 31553526 -170774821 + MER20 DNA MER1_type 24 106 -113 2446 84 6 0 chr4 31553526 31553837 -170774510 + AluSp SINE Alu 1 313 0 587 241 5 98 chr4 31553837 31553963 -170774384 + MER20 DNA MER1_type 106 207 -12 342 111 12 25 chr4 31555010 31555091 -170773256 + (TA)n Simple_repeat Simple_repeat 1 80 0 226 178 0 0 chr4 31555115 31555160 -170773187 - LTR66 LTR ERVL -172 438 394 189 154 0 0 chr4 31555160 31555199 -170773148 + (CATA)n Simple_repeat Simple_repeat 2 40 0 198 0 0 0 chr4 31555274 31555296 -170773051 + (TG)n Simple_repeat Simple_repeat 1 22 0 279 189 22 22 chr4 31555315 31555405 -170772942 + (TATAA)n Simple_repeat Simple_repeat 2 91 0 205 135 56 0 chr4 31555405 31555494 -170772853 + (TA)n Simple_repeat Simple_repeat 1 94 0 27 0 0 0 chr4 31555572 31555599 -170772748 + AT_rich Low_complexity Low_complexity 1 27 0 1815 138 11 0 chr4 31555621 31555889 -170772458 + AluSx SINE Alu 27 297 -15 2033 140 39 39 chr4 31555898 31556262 -170772085 + THE1B LTR MaLR 1 364 0 9098 120 81 36 chr4 31556262 31557774 -170770573 + THE1B-int LTR MaLR 1 1580 0 1956 126 72 31 chr4 31557774 31558123 -170770224 + THE1B LTR MaLR 1 363 -1 1415 208 15 0 chr4 31558124 31558398 -170769949 - AluJb SINE Alu -34 278 1 1219 144 0 16 chr4 31558610 31558826 -170769521 - AluSg/x SINE Alu 0 313 101 1527 231 35 3 chr4 31559338 31559706 -170768641 + MLT2C2 LTR ERVL 5 384 -80 228 174 0 0 chr4 31559754 31559800 -170768547 - LTR66 LTR ERVL -171 439 394 213 39 0 0 chr4 31559824 31559850 -170768497 + (GA)n Simple_repeat Simple_repeat 1 26 0 265 103 0 0 chr4 31559857 31559896 -170768451 + MLT2C2 LTR ERVL 359 397 0 1280 311 54 69 chr4 31562033 31563020 -170765327 - L2 LINE L2 0 3313 2328 23 33 0 0 chr4 31563036 31563066 -170765281 + AT_rich Low_complexity Low_complexity 1 30 0 1634 115 22 103 chr4 31563069 31563412 -170764935 + AluYb8 SINE Alu 1 318 0 592 359 48 19 chr4 31563616 31563987 -170764360 + LTR16A LTR ERVL 52 433 -17 225 279 33 0 chr4 31564950 31565011 -170763336 + MLT1D LTR MaLR 5 67 -438 296 220 0 22 chr4 31565013 31565104 -170763243 - L1MC4 LINE L1 -1339 6703 6615 231 283 0 22 chr4 31565025 31565117 -170763230 + L1MC4 LINE L1 6614 6703 -1339 * 309 153 0 0 chr4 31565120 31565218 -170763129 + (TA)n Simple_repeat Simple_repeat 1 98 0 1184 289 51 12 chr4 31565227 31565636 -170762711 + MLT1D LTR MaLR 81 505 0 25 31 0 0 chr4 31565722 31565754 -170762593 + AT_rich Low_complexity Low_complexity 1 32 0 5158 159 34 4 chr4 31565757 31566966 -170761381 - L1PA16 LINE L1 -9 6157 4912 327 255 7 28 chr4 31566961 31567106 -170761241 + L1P LINE L1 3022 3163 -2983 * 262 203 0 40 chr4 31567170 31567244 -170761103 + MER57A-int LTR ERV1 857 927 -4196 317 172 0 0 chr4 31567279 31567337 -170761010 + MER34C LTR ERV1 155 212 -373 431 209 46 38 chr4 31567501 31567661 -170760686 + MER57A-int LTR ERV1 1096 1199 -3672 286 220 0 77 chr4 31567647 31567738 -170760609 + MER57A-int LTR ERV1 2721 2804 -3142 * 442 217 22 0 chr4 31567818 31567910 -170760437 + MER57A-int LTR ERV1 3247 3340 -2991 287 193 0 45 chr4 31568159 31568247 -170760100 + MER57A-int LTR ERV1 1838 1921 -3202 189 211 0 0 chr4 31568435 31568487 -170759860 + A-rich Low_complexity Low_complexity 1 52 0 5230 197 50 56 chr4 31568694 31571339 -170757008 + MER57A-int LTR ERV1 4325 7145 -392 562 169 31 39 chr4 31571339 31571469 -170756878 + LTR54B LTR ERV1 3 131 -367 496 95 0 14 chr4 31571511 31571585 -170756762 + MER57A-int LTR ERV1 7222 7294 -243 1892 154 16 3 chr4 31571611 31571923 -170756424 + MER57A-int LTR ERV1 7222 7537 0 2389 146 15 2 chr4 31571923 31572321 -170756026 + MER57A LTR ERV1 1 403 0 598 299 86 0 chr4 31572324 31572545 -170755802 - HsTC2 DNA Tc2 -394 1504 1265 268 296 41 0 chr4 31572581 31572679 -170755668 - HsTC2 DNA Tc2 -1796 102 1 27 0 0 0 chr4 31572679 31572706 -170755641 + AT_rich Low_complexity Low_complexity 1 27 0 30 0 0 0 chr4 31573844 31573874 -170754473 + AT_rich Low_complexity Low_complexity 1 30 0 1019 165 28 0 chr4 31573876 31574058 -170754289 - L1PA16 LINE L1 -11 6155 5969 1423 233 61 42 chr4 31574314 31574848 -170753499 + MER67C LTR ERV1 4 511 -3 229 148 49 16 chr4 31576047 31576108 -170752239 + (TA)n Simple_repeat Simple_repeat 1 63 0 219 69 0 0 chr4 31577491 31577520 -170750827 + (TAA)n Simple_repeat Simple_repeat 1 29 0 2162 156 5 32 chr4 31577673 31578046 -170750301 - THE1B LTR MaLR -1 363 1 282 320 206 36 chr4 31578959 31579265 -170749082 - L2 LINE L2 -10 3303 2946 595 225 67 17 chr4 31579270 31579448 -170748899 - L1M4 LINE L1 -1959 4391 4205 331 111 16 16 chr4 31579467 31579530 -170748817 + (TTCC)n Simple_repeat Simple_repeat 1 63 0 971 97 29 11 chr4 31579542 31579717 -170748630 + CT-rich Low_complexity Low_complexity 2 179 0 533 319 65 9 chr4 31579731 31579960 -170748387 - L1M4 LINE L1 -4935 1346 1105 1382 179 32 47 chr4 31580041 31580381 -170747966 + L1MA8 LINE L1 5955 6289 -2 324 267 34 27 chr4 31582130 31582276 -170746071 - L1MEc LINE L1 -4286 2110 1964 * 852 103 0 0 chr4 31582275 31582401 -170745946 - L1PA7 LINE L1 -1318 4828 4703 6722 63 7 6 chr4 31582402 31583722 -170744625 + L1PA7 LINE L1 4833 6154 0 2730 287 60 59 chr4 31583747 31584946 -170743401 - L1MEc LINE L1 -4421 1975 773 303 28 0 0 chr4 31584946 31584982 -170743365 + (TG)n Simple_repeat Simple_repeat 1 36 0 2730 287 60 59 chr4 31584982 31585605 -170742742 - L1MEc LINE L1 -5623 773 152 * 5845 134 26 43 chr4 31585595 31586756 -170741591 + L1MA3 LINE L1 5163 6305 0 1775 235 36 35 chr4 31588045 31588538 -170739809 + MLT1D LTR MaLR 1 494 -11 26 74 0 0 chr4 31589871 31589925 -170738422 + AT_rich Low_complexity Low_complexity 1 54 0 244 291 109 117 chr4 31590633 31591028 -170737319 - L2 LINE L2 0 3313 2922 184 305 25 59 chr4 31591297 31591415 -170736932 + MIR SINE MIR 34 147 -115 328 304 73 16 chr4 31592433 31592624 -170735723 + MLT1J2 LTR MaLR 26 227 -223 3713 52 8 0 chr4 31592750 31593226 -170735121 + L1PA7 LINE L1 5675 6154 0 1776 163 97 83 chr4 31593607 31594103 -170734244 - MLT1D LTR MaLR 0 505 3 207 0 0 0 chr4 31594699 31594722 -170733625 + (T)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr4 31595349 31595370 -170732977 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 1744 176 3 0 chr4 31596138 31596428 -170731919 + AluJb SINE Alu 9 299 -13 272 230 24 32 chr4 31597095 31597221 -170731126 + (TA)n Simple_repeat Simple_repeat 1 125 0 558 327 82 18 chr4 31597470 31598042 -170730305 - L1ME3A LINE L1 -235 5935 5327 255 208 132 47 chr4 31598302 31598408 -170729939 - L1 LINE L1 -1149 4997 4883 451 345 82 16 chr4 31598515 31598941 -170729406 - L1 LINE L1 -1354 4792 4339 226 284 68 0 chr4 31598955 31599043 -170729304 - L1 LINE L1 -1922 4224 4131 2167 119 0 0 chr4 31599172 31599474 -170728873 - AluSx SINE Alu -8 304 3 21 82 0 0 chr4 31599902 31599951 -170728396 + AT_rich Low_complexity Low_complexity 1 49 0 657 181 0 45 chr4 31600157 31600290 -170728057 + AluJb SINE Alu 1 127 -185 29 28 0 0 chr4 31600446 31600482 -170727865 + AT_rich Low_complexity Low_complexity 1 36 0 384 331 41 35 chr4 31600680 31600849 -170727498 + MER5A DNA MER1_type 20 189 0 270 338 11 43 chr4 31600849 31601019 -170727328 - MER5B DNA MER1_type -6 172 18 445 110 55 0 chr4 31601345 31601418 -170726929 + AluSq/x SINE Alu 61 137 -175 1413 164 0 0 chr4 31601418 31601638 -170726709 + AluSg/x SINE Alu 90 309 -3 808 327 93 16 chr4 31601662 31602038 -170726309 - L2 LINE L2 -2646 668 264 352 366 46 16 chr4 31602643 31602837 -170725510 + L2 LINE L2 2430 2629 -685 222 118 0 0 chr4 31603206 31603240 -170725107 + (T)n Simple_repeat Simple_repeat 1 34 0 1151 231 80 41 chr4 31604585 31605065 -170723282 - MER67C LTR ERV1 -37 477 15 6007 150 47 19 chr4 31605127 31606324 -170722023 + Tigger3b DNA MER2_type 1 1230 -1 216 0 0 0 chr4 31606601 31606625 -170721722 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 591 213 41 77 chr4 31607808 31607977 -170720370 + MER20 DNA MER1_type 56 218 -1 264 138 0 55 chr4 31609164 31609273 -170719074 + (GA)n Simple_repeat Simple_repeat 2 104 0 283 301 62 26 chr4 31611132 31611245 -170717102 - MLT1E LTR MaLR -455 138 22 367 351 65 103 chr4 31612091 31612129 -170716218 - HAL1 LINE L1 -1832 675 637 402 21 0 0 chr4 31612129 31612176 -170716171 + (TG)n Simple_repeat Simple_repeat 2 48 0 367 351 65 103 chr4 31612176 31612470 -170715877 - HAL1 LINE L1 -1870 637 333 2181 151 27 24 chr4 31612470 31612882 -170715465 - L1MA6 LINE L1 0 6300 5888 367 351 65 103 chr4 31612882 31612966 -170715381 - HAL1 LINE L1 -2174 333 247 342 0 0 0 chr4 31612966 31613004 -170715343 + (TG)n Simple_repeat Simple_repeat 2 39 0 367 351 65 103 chr4 31613004 31613281 -170715066 - HAL1 LINE L1 -2260 247 7 24 0 0 0 chr4 31613930 31613954 -170714393 + AT_rich Low_complexity Low_complexity 1 24 0 3514 215 42 33 chr4 31614560 31614977 -170713370 - L1MB8 LINE L1 -108 6881 6469 892 112 0 0 chr4 31614977 31615111 -170713236 - L1PA14 LINE L1 -3 6158 6025 3514 215 42 33 chr4 31615111 31616559 -170711788 - L1MB8 LINE L1 -520 6469 4998 36 82 0 0 chr4 31616595 31616680 -170711667 + AT_rich Low_complexity Low_complexity 1 85 0 1290 279 32 16 chr4 31616680 31617175 -170711172 - L1MB8 LINE L1 -1980 4977 4475 6922 62 0 8 chr4 31617295 31618940 -170709407 - L1PA6 LINE L1 0 6154 4513 1388 242 78 67 chr4 31618944 31619918 -170708429 - L1MB8 LINE L1 -2446 4511 3527 25 0 0 0 chr4 31619918 31619943 -170708404 + AT_rich Low_complexity Low_complexity 1 25 0 1808 293 49 31 chr4 31619993 31621068 -170707279 - L1MB8 LINE L1 -4536 2423 1329 1691 335 61 26 chr4 31621725 31622563 -170705784 - L1MB8 LINE L1 -5951 908 42 27 29 0 0 chr4 31622648 31622682 -170705665 + AT_rich Low_complexity Low_complexity 1 34 0 1116 277 52 38 chr4 31622722 31623220 -170705127 + MLT1D LTR MaLR 1 505 0 26 30 0 0 chr4 31623343 31623376 -170704971 + AT_rich Low_complexity Low_complexity 1 33 0 311 253 46 11 chr4 31623381 31623468 -170704879 + L1MC4 LINE L1 6621 6710 -1332 217 341 55 0 chr4 31625531 31625622 -170702725 - L2 LINE L2 -775 2539 2444 193 347 14 0 chr4 31628483 31628555 -170699792 - MIR SINE MIR -127 135 63 743 200 0 0 chr4 31629695 31629825 -170698522 + FLAM_C SINE Alu 2 131 -2 6453 75 12 8 chr4 31631745 31633095 -170695252 + L1PA7 LINE L1 4795 6148 -6 285 246 0 0 chr4 31633098 31633163 -170695184 + L1MCa LINE L1 1612 1676 -4750 252 0 0 0 chr4 31633165 31633193 -170695154 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 664 332 20 10 chr4 31634319 31634611 -170693736 + MLT1J1 LTR MaLR 8 302 -144 24 32 0 0 chr4 31634960 31634991 -170693356 + AT_rich Low_complexity Low_complexity 1 31 0 666 221 12 18 chr4 31635861 31636024 -170692323 + MER3 DNA MER1_type 23 184 -25 1715 182 3 13 chr4 31636514 31636821 -170691526 + AluJb SINE Alu 1 304 -8 414 315 32 37 chr4 31639577 31639793 -170688554 - L2 LINE L2 -1 3312 3098 5655 160 24 34 chr4 31640100 31640285 -170688062 - L1MA3 LINE L1 0 6305 6120 1569 185 33 0 chr4 31640285 31640561 -170687786 + AluJb SINE Alu 1 285 -27 5655 160 24 34 chr4 31640561 31640773 -170687574 - L1MA3 LINE L1 -185 6120 5907 1681 159 0 57 chr4 31640773 31641093 -170687254 + AluSx SINE Alu 5 307 0 5655 160 24 34 chr4 31641093 31642022 -170686325 - L1MA3 LINE L1 -398 5907 4994 208 271 0 0 chr4 31642509 31642557 -170685790 + L2 LINE L2 2602 2649 -665 23 33 0 0 chr4 31642627 31642657 -170685690 + AT_rich Low_complexity Low_complexity 1 30 0 1396 207 26 0 chr4 31642664 31642934 -170685413 - AluJo SINE Alu -22 290 14 1951 111 0 52 chr4 31643263 31643588 -170684759 + AluSc SINE Alu 1 308 -1 2796 10 0 0 chr4 31644036 31644343 -170684004 + AluY SINE Alu 1 307 -4 35 63 0 0 chr4 31644643 31644706 -170683641 + AT_rich Low_complexity Low_complexity 1 63 0 1311 239 32 67 chr4 31645232 31645755 -170682592 + MLT1D LTR MaLR 1 505 0 34 24 0 0 chr4 31645980 31646021 -170682326 + AT_rich Low_complexity Low_complexity 1 41 0 510 305 112 9 chr4 31646327 31646550 -170681797 + MIR SINE MIR 7 252 -10 254 71 0 24 chr4 31647000 31647042 -170681305 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1287 220 0 52 chr4 31647048 31647339 -170681008 - AluJo SINE Alu -36 276 1 5624 110 38 6 chr4 31647378 31648479 -170679868 + L1PA10 LINE L1 5017 6157 -11 211 324 88 0 chr4 31649040 31649142 -170679205 - L2 LINE L2 0 3313 3203 21 36 0 0 chr4 31649577 31649605 -170678742 + AT_rich Low_complexity Low_complexity 1 28 0 2199 107 0 3 chr4 31649772 31650081 -170678266 + AluY SINE Alu 1 308 -3 336 24 0 0 chr4 31651260 31651301 -170677046 + (CA)n Simple_repeat Simple_repeat 2 42 0 5180 158 14 10 chr4 31651843 31652752 -170675595 - L1PA16 LINE L1 0 6166 5254 283 128 0 0 chr4 31652787 31652834 -170675513 - L1PA16 LINE L1 -860 5286 5240 3938 226 19 25 chr4 31652835 31653378 -170674969 + L1P LINE L1 4235 4769 -1377 192 40 0 0 chr4 31653378 31653403 -170674944 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3938 226 19 25 chr4 31653403 31653887 -170674460 + L1P LINE L1 4769 5255 -891 1908 140 29 45 chr4 31654896 31655275 -170673072 + THE1C LTR MaLR 1 373 -2 956 202 17 45 chr4 31655464 31655751 -170672596 - L1MB2 LINE L1 -2 7129 6851 1412 109 0 92 chr4 31655757 31655986 -170672361 - AluSc SINE Alu -81 228 21 2135 189 48 50 chr4 31655997 31656515 -170671832 - L1MB2 LINE L1 -343 6788 6271 509 113 0 12 chr4 31656515 31656595 -170671752 + MADE1 DNA Mariner 1 79 -1 2135 189 48 50 chr4 31656595 31657131 -170671216 - L1MB2 LINE L1 -860 6271 5719 4548 236 62 24 chr4 31657132 31658734 -170669613 - L1MB2 LINE L1 -2200 4906 3244 287 282 45 13 chr4 31658739 31658895 -170669452 - L1MB2 LINE L1 -3965 3143 2983 2200 282 54 31 chr4 31658982 31659329 -170669018 - L1MB2 LINE L1 -4512 2596 2258 216 0 0 0 chr4 31659329 31659353 -170668994 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2200 282 54 31 chr4 31659353 31660049 -170668298 - L1MB2 LINE L1 -4850 2258 1529 230 332 67 45 chr4 31660197 31660420 -170667927 - L1MB2 LINE L1 -6802 228 1 21 36 0 0 chr4 31660669 31660697 -170667650 + AT_rich Low_complexity Low_complexity 1 28 0 965 284 78 35 chr4 31661483 31662089 -170666258 + MLT1E3 LTR MaLR 1 621 -3 315 0 0 0 chr4 31662100 31662135 -170666212 + (TA)n Simple_repeat Simple_repeat 1 35 0 474 234 70 104 chr4 31662412 31662711 -170665636 + L1ME3A LINE L1 5853 6141 -29 889 277 113 41 chr4 31662722 31662850 -170665497 - L1ME3A LINE L1 -335 5835 5718 1860 154 3 3 chr4 31662850 31663142 -170665205 + AluJb SINE Alu 1 292 -20 889 277 113 41 chr4 31663142 31663709 -170664638 - L1ME3A LINE L1 -452 5718 5096 407 311 71 46 chr4 31663781 31663875 -170664472 + MIR SINE MIR 6 96 -166 2011 212 26 9 chr4 31663875 31664089 -170664258 - MSTB1 LTR MaLR 0 432 223 369 0 0 0 chr4 31664089 31664130 -170664217 + (TG)n Simple_repeat Simple_repeat 1 41 0 2011 212 26 9 chr4 31664130 31664340 -170664007 - MSTB1 LTR MaLR -209 223 1 407 311 71 46 chr4 31664340 31664483 -170663864 + MIR SINE MIR 96 249 -13 359 325 25 25 chr4 31664676 31664876 -170663471 - LTR67 LTR ERVL 0 557 358 1335 262 36 25 chr4 31665052 31665414 -170662933 + MLT1E LTR MaLR 226 591 -2 2260 92 7 0 chr4 31666681 31666975 -170661372 + AluY SINE Alu 1 296 -15 26 30 0 0 chr4 31667105 31667138 -170661209 + AT_rich Low_complexity Low_complexity 1 33 0 1514 266 48 48 chr4 31667276 31667773 -170660574 + MLT1F1 LTR MaLR 46 567 0 39 22 0 0 chr4 31668572 31668618 -170659729 + AT_rich Low_complexity Low_complexity 1 46 0 1854 136 0 32 chr4 31669138 31669447 -170658900 + AluSx SINE Alu 3 301 -11 1857 139 0 43 chr4 31669652 31669975 -170658372 + AluY SINE Alu 1 309 -2 303 279 12 67 chr4 31670016 31670181 -170658166 - HAL1 LINE L1 -4 2503 2348 322 198 21 21 chr4 31670366 31670462 -170657885 - HAL1 LINE L1 -297 2210 2115 1724 223 55 81 chr4 31670462 31671127 -170657220 + MLT1E2 LTR MaLR 1 626 0 2418 64 0 13 chr4 31671304 31671618 -170656729 - AluY SINE Alu -1 310 1 293 227 50 25 chr4 31671993 31672112 -170656235 - HAL1 LINE L1 -1421 1086 965 2262 283 93 11 chr4 31672137 31673018 -170655329 - MER69B DNA AcHobo -273 953 1 22 35 0 0 chr4 31673301 31673330 -170655017 + AT_rich Low_complexity Low_complexity 1 29 0 417 374 67 43 chr4 31673861 31674401 -170653946 - HAL1 LINE L1 -1813 694 142 1479 240 34 16 chr4 31674534 31674917 -170653430 + MLT1B LTR MaLR 1 390 0 251 333 103 8 chr4 31675813 31675930 -170652417 + MER91C DNA MER1_type 2 129 -11 1638 203 14 14 chr4 31676238 31676603 -170651744 + MLT1A1 LTR MaLR 1 365 0 23 33 0 0 chr4 31678023 31678053 -170650294 + AT_rich Low_complexity Low_complexity 1 30 0 3692 58 0 2 chr4 31678790 31679259 -170649088 + L1PA8 LINE L1 5694 6161 -11 37 23 0 0 chr4 31679285 31679329 -170649018 + AT_rich Low_complexity Low_complexity 1 44 0 1345 233 98 34 chr4 31679798 31680266 -170648081 + MLT1D LTR MaLR 4 501 -4 596 343 72 52 chr4 31680352 31681386 -170646961 + L2 LINE L2 2148 3201 -71 316 282 51 0 chr4 31681754 31681871 -170646476 + Tigger8 DNA MER2_type 147 269 -397 359 329 81 20 chr4 31681930 31682228 -170646119 + MLT1L LTR MaLR 65 380 -235 484 312 23 18 chr4 31682435 31682653 -170645694 + Tigger8 DNA MER2_type 348 566 -100 27 62 0 0 chr4 31682781 31682829 -170645518 + AT_rich Low_complexity Low_complexity 1 48 0 180 0 0 0 chr4 31683127 31683147 -170645200 + (T)n Simple_repeat Simple_repeat 1 20 0 185 62 0 31 chr4 31683280 31683312 -170645035 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 24 53 0 0 chr4 31683835 31683873 -170644474 + AT_rich Low_complexity Low_complexity 1 38 0 2213 93 3 3 chr4 31684257 31684547 -170643800 - AluSx SINE Alu -20 292 3 200 296 71 51 chr4 31684763 31684861 -170643486 + L3b LINE CR1 1358 1457 -126 446 286 58 7 chr4 31685079 31685233 -170643114 + MIR3 SINE MIR 40 201 -7 1255 217 75 3 chr4 31685403 31685721 -170642626 - MLT1C LTR MaLR -124 343 3 180 210 0 65 chr4 31685825 31685887 -170642460 - MIR SINE MIR -30 232 175 1822 156 0 17 chr4 31686088 31686390 -170641957 + AluSx SINE Alu 3 299 -13 339 244 67 0 chr4 31686655 31686745 -170641602 - MIR SINE MIR -100 162 67 1039 241 56 56 chr4 31687137 31687494 -170640853 - MLT1A2 LTR MaLR 0 374 18 285 149 0 0 chr4 31688604 31688671 -170639676 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 269 282 2 0 chr4 31688983 31689059 -170639288 + MER77 LTR ERV1 22 138 -467 2305 179 19 21 chr4 31689083 31689569 -170638778 - MER31A LTR ERV1 0 485 1 676 169 180 11 chr4 31689588 31689766 -170638581 - L1MA9 LINE L1 -1 6311 6104 2359 59 0 0 chr4 31689771 31690057 -170638290 + AluY SINE Alu 17 302 -9 337 267 0 24 chr4 31690104 31690227 -170638120 + MER21B LTR ERV1 247 366 -239 3114 170 83 33 chr4 31690227 31690915 -170637432 + LTR8A LTR ERV1 1 722 -5 363 294 18 76 chr4 31690982 31691236 -170637111 + MER77 LTR ERV1 409 585 -20 348 182 30 15 chr4 31692132 31692198 -170636149 + MER5A DNA MER1_type 46 112 -77 396 179 40 0 chr4 31692199 31692350 -170635997 + (TA)n Simple_repeat Simple_repeat 2 158 0 617 339 119 27 chr4 31692381 31692975 -170635372 - L2 LINE L2 -113 3200 2551 213 330 62 78 chr4 31693033 31693418 -170634929 - L2 LINE L2 -905 2409 2031 1332 178 98 22 chr4 31693419 31693694 -170634653 + AluJo SINE Alu 1 296 -16 285 301 21 21 chr4 31694198 31694291 -170634056 - L2 LINE L2 -3134 180 88 446 290 101 25 chr4 31694458 31694696 -170633651 - MER21B LTR ERV1 -149 714 459 433 237 80 92 chr4 31694689 31694922 -170633425 - MER77 LTR ERV1 -226 379 145 * 450 275 37 123 chr4 31695265 31695509 -170632838 + MER58A DNA MER1_type 1 223 -1 276 282 8 46 chr4 31695567 31695698 -170632649 + MLT1J LTR MaLR 386 511 0 21 0 0 0 chr4 31698163 31698184 -170630163 + AT_rich Low_complexity Low_complexity 1 21 0 2258 92 10 0 chr4 31699531 31699825 -170628522 - AluY SINE Alu -12 299 3 7224 48 6 0 chr4 31700049 31700971 -170627376 + L1PA3 LINE L1 5228 6155 0 1199 234 164 28 chr4 31700971 31701440 -170626907 + MER92B LTR ERV1 100 632 -4 237 252 18 156 chr4 31701464 31701571 -170626776 + MER92C LTR ERV1 2 65 -489 1451 216 146 47 chr4 31701571 31702038 -170626309 - MER67D LTR ERV1 -1 513 1 237 252 18 156 chr4 31702038 31702148 -170626199 + MER92C LTR ERV1 65 189 -365 235 246 46 0 chr4 31702193 31702258 -170626089 + MER92C LTR ERV1 487 554 0 2087 183 2 20 chr4 31703304 31703709 -170624638 + MER57A LTR ERV1 6 403 0 28 86 0 0 chr4 31703958 31704028 -170624319 + AT_rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr4 31704143 31704164 -170624183 + AT_rich Low_complexity Low_complexity 1 21 0 273 98 0 0 chr4 31704808 31704849 -170623498 + (CA)n Simple_repeat Simple_repeat 2 42 0 747 48 48 0 chr4 31705359 31705484 -170622863 + (GA)n Simple_repeat Simple_repeat 2 132 0 2339 218 19 23 chr4 31706439 31706921 -170621426 - MLT2B1 LTR ERVL -40 480 1 2344 157 13 60 chr4 31708341 31708788 -170619559 - MSTB LTR MaLR 0 426 1 689 148 74 0 chr4 31708788 31708923 -170619424 - MSTB-int LTR MaLR 0 1651 1507 563 285 21 43 chr4 31709303 31709489 -170618858 + MER58A DNA MER1_type 26 207 -17 421 303 74 71 chr4 31709874 31710807 -170617540 - L1MEd LINE L1 -4750 1560 586 793 319 61 63 chr4 31711554 31712081 -170616266 + LTR67 LTR ERVL 32 557 0 240 358 6 48 chr4 31712498 31712663 -170615684 + L2 LINE L2 3156 3313 0 21 57 0 0 chr4 31712726 31712761 -170615586 + AT_rich Low_complexity Low_complexity 1 35 0 1660 283 22 15 chr4 31713184 31713722 -170614625 - MLT1F LTR MaLR 0 542 1 24 32 0 0 chr4 31714119 31714150 -170614197 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr4 31714418 31714444 -170613903 + AT_rich Low_complexity Low_complexity 1 26 0 1617 202 20 15 chr4 31714551 31714893 -170613454 + MER2 DNA MER2_type 1 344 0 35 41 0 0 chr4 31715168 31715217 -170613130 + AT_rich Low_complexity Low_complexity 1 49 0 1233 234 77 92 chr4 31715224 31715907 -170612440 + MER21B LTR ERV1 25 754 -109 180 0 0 0 chr4 31716888 31716908 -170611439 + (TTG)n Simple_repeat Simple_repeat 2 21 0 26 50 0 0 chr4 31717317 31717357 -170610990 + AT_rich Low_complexity Low_complexity 1 40 0 347 324 58 9 chr4 31717414 31717588 -170610759 - MIR SINE MIR -64 144 9 191 32 65 0 chr4 31718168 31718199 -170610148 + (ATATG)n Simple_repeat Simple_repeat 2 34 0 27 49 0 0 chr4 31718275 31718316 -170610031 + AT_rich Low_complexity Low_complexity 1 41 0 2338 79 3 0 chr4 31718325 31718630 -170609717 - AluY SINE Alu -5 306 1 209 326 104 41 chr4 31719258 31719479 -170608868 + L2 LINE L2 2982 3216 -97 606 204 51 7 chr4 31719669 31719806 -170608541 + MER82 DNA MER2_type 1 143 -510 1333 266 67 32 chr4 31720211 31720647 -170607700 + MER82 DNA MER2_type 200 650 -3 2798 10 0 0 chr4 31721558 31721867 -170606480 + AluYb8 SINE Alu 1 309 -9 408 311 13 13 chr4 31722233 31722384 -170605963 - L2 LINE L2 -4 3309 3159 326 283 80 22 chr4 31722774 31722912 -170605435 - LTR16B LTR ERVL -14 450 305 826 78 39 0 chr4 31722998 31723127 -170605220 - L1MA4A LINE L1 -64 6239 6106 27 29 0 0 chr4 31723347 31723381 -170604966 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr4 31723774 31723798 -170604549 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 31724018 31724046 -170604301 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr4 31725528 31725568 -170602779 + AT_rich Low_complexity Low_complexity 1 40 0 289 274 9 44 chr4 31725734 31725847 -170602500 + L1MA10 LINE L1 6215 6323 -11 370 224 24 0 chr4 31726382 31726507 -170601840 + CT-rich Low_complexity Low_complexity 3 130 0 243 204 75 43 chr4 31726995 31727088 -170601259 - L1ME LINE L1 -301 5820 5725 309 214 10 92 chr4 31727464 31727562 -170600785 + L1MC4 LINE L1 6614 6703 -1339 252 159 37 19 chr4 31727563 31727584 -170600763 + (TA)n Simple_repeat Simple_repeat 1 20 -89 2070 126 0 0 chr4 31727584 31727869 -170600478 - AluSq SINE Alu -26 287 3 252 159 37 19 chr4 31727869 31727954 -170600393 + (TA)n Simple_repeat Simple_repeat 20 109 0 23 0 0 0 chr4 31727992 31728015 -170600332 + AT_rich Low_complexity Low_complexity 1 23 0 190 148 37 0 chr4 31728032 31728086 -170600261 + (TA)n Simple_repeat Simple_repeat 1 56 0 392 252 81 9 chr4 31728086 31728197 -170600150 - FLAM_A SINE Alu -14 119 1 2260 101 49 38 chr4 31729741 31729933 -170598414 - THE1B LTR MaLR 0 364 165 1908 138 10 30 chr4 31729933 31730238 -170598109 - AluSp SINE Alu -14 299 1 2260 101 49 38 chr4 31730238 31730391 -170597956 - THE1B LTR MaLR -199 165 15 231 188 0 0 chr4 31731052 31731100 -170597247 + (CA)n Simple_repeat Simple_repeat 1 48 0 25 31 0 0 chr4 31731361 31731393 -170596954 + AT_rich Low_complexity Low_complexity 1 32 0 29 78 0 0 chr4 31731770 31731834 -170596513 + AT_rich Low_complexity Low_complexity 1 64 0 2121 181 41 14 chr4 31732363 31732778 -170595569 + MSTB LTR MaLR 1 426 0 333 68 0 0 chr4 31733114 31733158 -170595189 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 23 33 0 0 chr4 31733202 31733232 -170595115 + AT_rich Low_complexity Low_complexity 1 30 0 188 0 74 0 chr4 31733635 31733662 -170594685 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1361 201 48 8 chr4 31733665 31733933 -170594414 - AluJb SINE Alu -27 285 7 377 250 24 18 chr4 31734443 31734607 -170593740 + (TA)n Simple_repeat Simple_repeat 2 166 0 24 0 0 0 chr4 31734649 31734673 -170593674 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr4 31735311 31735341 -170593006 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 31735790 31735811 -170592536 + AT_rich Low_complexity Low_complexity 1 21 0 2202 95 3 0 chr4 31735849 31736145 -170592202 - AluSg SINE Alu -13 297 1 25 0 0 0 chr4 31737335 31737360 -170590987 + AT_rich Low_complexity Low_complexity 1 25 0 24 67 0 0 chr4 31737422 31737467 -170590880 + AT_rich Low_complexity Low_complexity 1 45 0 948 92 15 0 chr4 31737963 31738093 -170590254 - AluYb8 SINE Alu -186 132 1 2290 101 0 0 chr4 31739008 31739306 -170589041 + AluSc SINE Alu 5 302 -7 34 24 0 0 chr4 31739486 31739527 -170588820 + AT_rich Low_complexity Low_complexity 1 41 0 181 315 14 14 chr4 31739857 31739930 -170588417 + MIR SINE MIR 159 231 -31 1519 99 25 58 chr4 31740206 31740449 -170587898 + THE1A LTR MaLR 1 235 -120 3540 10 0 0 chr4 31740449 31740845 -170587502 - L1PA3 LINE L1 -304 5851 5456 2382 25 0 0 chr4 31740845 31741124 -170587223 + L1PA3 LINE L1 5876 6155 0 872 133 0 15 chr4 31741131 31741266 -170587081 + THE1A LTR MaLR 223 355 0 417 102 0 0 chr4 31741354 31741413 -170586934 + MADE1 DNA Mariner 22 80 0 2213 144 10 13 chr4 31741462 31741859 -170586488 - L1MA2 LINE L1 0 6304 5909 1508 254 74 52 chr4 31741921 31743107 -170585240 - L1M4c LINE L1 -3160 3055 1876 2077 179 5 47 chr4 31743114 31743498 -170584849 + MLT2D LTR ERVL 1 367 -47 408 20 0 0 chr4 31743498 31743547 -170584800 + (TA)n Simple_repeat Simple_repeat 2 50 0 2077 179 5 47 chr4 31743547 31743587 -170584760 + MLT2D LTR ERVL 367 407 -7 577 297 52 80 chr4 31743595 31743864 -170584483 - L1M4c LINE L1 -4535 1861 1586 2284 108 0 0 chr4 31743864 31744160 -170584187 + AluSc SINE Alu 1 296 -13 577 297 52 80 chr4 31744160 31745108 -170583239 - L1M4c LINE L1 -4810 1586 670 21 0 0 0 chr4 31745382 31745403 -170582944 + AT_rich Low_complexity Low_complexity 1 21 0 756 169 0 22 chr4 31745459 31745595 -170582752 - FLAM_C SINE Alu 0 133 1 3028 111 25 0 chr4 31746457 31746906 -170581441 + L1PB1 LINE L1 5691 6150 -1 1266 212 9 51 chr4 31746963 31747279 -170581068 - AluJo SINE Alu -7 305 3 335 342 61 53 chr4 31748972 31749200 -170579147 + MIR SINE MIR 33 262 0 368 167 0 13 chr4 31750274 31750352 -170577995 + GA-rich Low_complexity Low_complexity 4 80 0 286 109 87 0 chr4 31750986 31751078 -170577269 + (TA)n Simple_repeat Simple_repeat 2 101 0 347 250 80 43 chr4 31751674 31751862 -170576485 - LTR50 LTR ERVL -591 204 10 209 333 148 14 chr4 31751863 31752073 -170576274 - L3 LINE CR1 -467 1110 873 413 226 68 7 chr4 31752799 31752945 -170575402 - MER103 DNA DNA -10 156 2 1750 160 3 14 chr4 31753923 31754216 -170574131 + AluJb SINE Alu 3 292 -20 230 220 0 17 chr4 31754414 31754473 -170573874 - L1M4 LINE L1 -3551 2595 2538 * 3703 203 30 45 chr4 31754464 31755889 -170572458 + L1MA10 LINE L1 4928 6324 -10 231 188 0 0 chr4 31757227 31757275 -170571072 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 229 258 11 11 chr4 31757275 31757364 -170570983 + L1MC4 LINE L1 6615 6703 -1339 21 71 0 0 chr4 31757387 31757429 -170570918 + AT_rich Low_complexity Low_complexity 1 42 0 283 223 115 69 chr4 31758101 31758231 -170570116 + MIR SINE MIR 79 214 -48 21 0 0 0 chr4 31758314 31758335 -170570012 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4 31758482 31758513 -170569834 + AT_rich Low_complexity Low_complexity 1 31 0 2106 112 6 10 chr4 31758515 31758828 -170569519 + AluSx SINE Alu 1 312 0 1077 250 138 33 chr4 31759364 31759820 -170568527 - MLT1D LTR MaLR -8 497 1 35 63 0 0 chr4 31760254 31760317 -170568030 + AT_rich Low_complexity Low_complexity 1 63 0 2185 118 0 0 chr4 31760470 31760775 -170567572 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr4 31761052 31761074 -170567273 + AT_rich Low_complexity Low_complexity 1 22 0 575 89 16 40 chr4 31761208 31761509 -170566838 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2218 115 0 3 chr4 31761509 31761822 -170566525 - AluSx SINE Alu 0 613 1 1416 213 66 49 chr4 31762817 31763361 -170564986 + MLT2A2 LTR ERVL 1 554 0 272 234 85 11 chr4 31763785 31763879 -170564468 - LTR16A1 LTR ERVL -43 414 314 1610 215 22 47 chr4 31764333 31764821 -170563526 - L1PA16 LINE L1 -786 5360 4885 4447 157 22 4 chr4 31764821 31765593 -170562754 + L1PA16 LINE L1 5381 6166 0 483 259 150 34 chr4 31766014 31766280 -170562067 + LTR33A LTR ERVL 223 519 -4 600 208 95 54 chr4 31766754 31766904 -170561443 - L1MD3 LINE L1 -19 7976 7813 1857 136 0 42 chr4 31766904 31767214 -170561133 + AluSg SINE Alu 1 297 -13 600 208 95 54 chr4 31767214 31767284 -170561063 - L1MD3 LINE L1 -182 7813 7747 264 100 0 0 chr4 31767315 31767355 -170560992 + (CCAA)n Simple_repeat Simple_repeat 4 43 0 251 303 80 37 chr4 31767379 31767567 -170560780 + HAL1 LINE L1 1412 1607 -900 272 328 102 21 chr4 31768174 31768360 -170559987 - LTR33 LTR ERVL 0 521 321 328 385 66 0 chr4 31768421 31768603 -170559744 - LTR33 LTR ERVL -309 212 19 1422 208 120 8 chr4 31769847 31770198 -170558149 - MLT1B LTR MaLR 0 390 1 278 278 66 28 chr4 31771397 31771609 -170556738 + L1 LINE L1 2401 2620 -3526 256 135 0 0 chr4 31771923 31771960 -170556387 + L1 LINE L1 3875 3911 -2235 22 80 0 0 chr4 31771966 31772016 -170556331 + AT_rich Low_complexity Low_complexity 1 50 0 473 292 151 39 chr4 31772072 31772503 -170555844 + L1 LINE L1 4035 4513 -1633 218 267 160 0 chr4 31773973 31774048 -170554299 + L2 LINE L2 3220 3306 -7 5457 123 25 6 chr4 31774943 31775839 -170552508 + L1MA1 LINE L1 1944 2856 -4709 * 9478 173 23 10 chr4 31775820 31776777 -170551570 + L1MA1 LINE L1 4627 5571 -2150 1885 135 0 52 chr4 31776777 31777104 -170551243 + AluSx SINE Alu 1 310 -2 9478 173 23 10 chr4 31777104 31778111 -170550236 + L1MA1 LINE L1 5571 6564 -1157 2265 92 3 3 chr4 31778111 31778416 -170549931 + AluSg SINE Alu 1 305 -5 9478 173 23 10 chr4 31778416 31779504 -170548843 + L1MA1 LINE L1 6564 7721 0 727 366 117 10 chr4 31779651 31780154 -170548193 - L2 LINE L2 -2728 586 30 200 383 65 0 chr4 31780235 31780342 -170548005 + MIR3 SINE MIR 65 178 -30 388 374 70 0 chr4 31780437 31780667 -170547680 - MIR SINE MIR 0 262 17 23 0 0 0 chr4 31780708 31780731 -170547616 + AT_rich Low_complexity Low_complexity 1 23 0 2190 66 28 3 chr4 31781490 31781776 -170546571 + AluSq SINE Alu 4 296 -17 231 36 0 0 chr4 31781785 31781813 -170546534 + (GGGGA)n Simple_repeat Simple_repeat 5 32 0 677 105 0 9 chr4 31781838 31781952 -170546395 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 24 32 0 0 chr4 31782195 31782226 -170546121 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 31782491 31782515 -170545832 + AT_rich Low_complexity Low_complexity 1 24 0 1955 132 60 30 chr4 31782875 31783239 -170545108 + THE1C LTR MaLR 1 375 0 698 244 35 0 chr4 31783829 31784001 -170544346 + MER20 DNA MER1_type 1 178 -41 1713 290 71 28 chr4 31784319 31785308 -170543039 - L1ME2 LINE L1 -243 5990 5045 1192 215 0 4 chr4 31785308 31785545 -170542802 + MER46A DNA MER2_type 1 236 0 1713 290 71 28 chr4 31785545 31785919 -170542428 - L1ME2 LINE L1 -1188 5045 4688 1984 130 0 13 chr4 31785919 31786220 -170542127 + AluSg SINE Alu 1 297 -13 1713 290 71 28 chr4 31786220 31786586 -170541761 - L1ME2 LINE L1 -1545 4688 4187 306 302 28 37 chr4 31786617 31786832 -170541515 - L1ME2 LINE L1 -2316 3899 3687 8507 122 18 0 chr4 31786905 31788157 -170540190 - HSMAR1 DNA Mariner -3 1284 11 301 300 82 24 chr4 31788194 31788364 -170539983 - L1ME2 LINE L1 -2620 3595 3416 950 163 0 0 chr4 31788467 31788614 -170539733 - AluSg/x SINE Alu -12 300 154 316 332 75 57 chr4 31788762 31788994 -170539353 - L1ME2 LINE L1 -4613 1783 1557 1710 190 0 0 chr4 31788994 31789283 -170539064 - AluSx SINE Alu -23 289 1 316 332 75 57 chr4 31789283 31790705 -170537642 - L1ME2 LINE L1 -4839 1557 100 1152 158 127 84 chr4 31791331 31791678 -170536669 + MSTA LTR MaLR 14 428 0 307 314 27 25 chr4 31793409 31793567 -170534780 + MIR SINE MIR 60 217 -45 2110 273 69 32 chr4 31794774 31794974 -170533373 - L1M1 LINE L1 -3953 3612 3421 249 33 0 0 chr4 31794974 31795004 -170533343 + (TG)n Simple_repeat Simple_repeat 1 30 0 2110 273 69 32 chr4 31795004 31795561 -170532786 - L1M1 LINE L1 -4144 3421 2886 212 0 36 0 chr4 31795561 31795589 -170532758 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2110 273 69 32 chr4 31795589 31796478 -170531869 - L1M1 LINE L1 -4679 2886 2097 1008 168 22 5 chr4 31796477 31796662 -170531685 - L1 LINE L1 -1906 4240 4053 * 1476 342 49 43 chr4 31796684 31797716 -170530631 - L1M1 LINE L1 -5241 2255 1217 1720 246 35 43 chr4 31799659 31800167 -170528180 + MER67D LTR ERV1 1 504 -10 424 263 26 64 chr4 31800596 31800752 -170527595 - MER69A DNA AcHobo -9 168 19 225 275 0 25 chr4 31801155 31801235 -170527112 + (TATATG)n Simple_repeat Simple_repeat 5 82 0 30 27 0 0 chr4 31801621 31801658 -170526689 + AT_rich Low_complexity Low_complexity 1 37 0 324 314 58 43 chr4 31802031 31802219 -170526128 + Charlie2 DNA MER1_type 26 216 -2646 186 167 0 0 chr4 31802220 31802256 -170526091 + (CATA)n Simple_repeat Simple_repeat 4 39 0 336 237 26 0 chr4 31802350 31802426 -170525921 + Charlie2 DNA MER1_type 1895 1972 -890 23 0 0 0 chr4 31802665 31802688 -170525659 + AT_rich Low_complexity Low_complexity 1 23 0 1193 173 90 12 chr4 31803577 31803869 -170524478 - L1MA4 LINE L1 -4 6296 5987 399 225 166 47 chr4 31804066 31804235 -170524112 - MIR SINE MIR -6 256 68 262 366 84 8 chr4 31804249 31804380 -170523967 + L2 LINE L2 3132 3272 0 32 43 0 0 chr4 31806043 31806089 -170522258 + AT_rich Low_complexity Low_complexity 1 46 0 31 88 0 0 chr4 31806306 31806386 -170521961 + AT_rich Low_complexity Low_complexity 1 80 0 1210 193 16 62 chr4 31806583 31806888 -170521459 - AluJo SINE Alu -10 302 12 22 0 0 0 chr4 31807364 31807386 -170520961 + AT_rich Low_complexity Low_complexity 1 22 0 1627 158 29 0 chr4 31807516 31807789 -170520558 + AluSx SINE Alu 21 301 -11 495 291 160 50 chr4 31807907 31808481 -170519866 - L1M4 LINE L1 -1397 4749 4113 39 65 0 28 chr4 31808585 31808692 -170519655 + AT_rich Low_complexity Low_complexity 1 104 0 294 193 36 72 chr4 31808816 31808899 -170519448 - MIR SINE MIR 0 262 183 42 0 0 0 chr4 31809148 31809190 -170519157 + AT_rich Low_complexity Low_complexity 1 42 0 652 329 68 49 chr4 31809284 31809998 -170518349 - L2 LINE L2 -8 3305 2577 272 138 58 23 chr4 31810230 31810317 -170518030 - L1MA7 LINE L1 -1 6290 6201 22 0 0 0 chr4 31810657 31810679 -170517668 + AT_rich Low_complexity Low_complexity 1 22 0 311 337 176 12 chr4 31811173 31811428 -170516919 + L2 LINE L2 2612 2908 -406 264 185 15 0 chr4 31811743 31811808 -170516539 - LTR66 LTR ERVL -151 459 394 234 274 0 0 chr4 31811808 31811859 -170516488 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 1938 122 0 17 chr4 31811868 31812155 -170516192 + AluSx SINE Alu 3 284 -28 210 34 51 51 chr4 31812212 31812271 -170516076 + (TA)n Simple_repeat Simple_repeat 2 60 0 22 56 0 0 chr4 31812289 31812325 -170516022 + AT_rich Low_complexity Low_complexity 1 36 0 32 26 0 0 chr4 31812660 31812699 -170515648 + AT_rich Low_complexity Low_complexity 1 39 0 33 85 0 0 chr4 31813446 31813528 -170514819 + AT_rich Low_complexity Low_complexity 1 82 0 389 251 148 6 chr4 31813692 31813875 -170514472 + L1MC3 LINE L1 5761 5967 -199 519 204 39 0 chr4 31813875 31813978 -170514369 + U6 snRNA snRNA 1 107 0 1391 108 99 14 chr4 31814005 31814227 -170514120 - AluSq SINE Alu -72 241 1 219 36 0 0 chr4 31814246 31814274 -170514073 + (A)n Simple_repeat Simple_repeat 1 28 0 365 228 140 52 chr4 31814291 31814427 -170513920 + L1ME1 LINE L1 5963 6110 -56 34 24 0 0 chr4 31815010 31815051 -170513296 + AT_rich Low_complexity Low_complexity 1 41 0 30 59 0 0 chr4 31815814 31815865 -170512482 + AT_rich Low_complexity Low_complexity 1 51 0 23 54 0 0 chr4 31816238 31816275 -170512072 + AT_rich Low_complexity Low_complexity 1 37 0 358 287 91 7 chr4 31816805 31816948 -170511399 + MIR SINE MIR 108 262 0 22 0 0 0 chr4 31816968 31816990 -170511357 + AT_rich Low_complexity Low_complexity 1 22 0 207 326 0 23 chr4 31817113 31817199 -170511148 + CT-rich Low_complexity Low_complexity 2 85 0 244 281 59 84 chr4 31818367 31818570 -170509777 + L2 LINE L2 2594 2791 -523 200 94 31 0 chr4 31818774 31818806 -170509541 + (CAGAA)n Simple_repeat Simple_repeat 4 36 0 259 231 0 0 chr4 31819094 31819146 -170509201 + MER94 DNA DNA 1 52 -82 920 321 76 49 chr4 31819383 31820774 -170507573 + L1MEc LINE L1 82 1510 -4886 1171 286 60 44 chr4 31820876 31821744 -170506603 + L1MEc LINE L1 2698 3579 -2636 308 311 22 0 chr4 31821811 31821991 -170506356 + MER20B DNA MER1_type 515 698 -85 1567 198 58 9 chr4 31823013 31823357 -170504990 + MER47A DNA MER2_type 6 366 0 692 231 71 123 chr4 31824269 31824374 -170503973 + MER57A LTR ERV1 43 152 -251 638 248 45 20 chr4 31824374 31824576 -170503771 - MER6B DNA MER2_type -3 207 1 692 231 71 123 chr4 31824576 31824851 -170503496 + MER57A LTR ERV1 152 403 0 200 132 26 0 chr4 31825090 31825128 -170503219 + A-rich Low_complexity Low_complexity 2 40 0 1632 163 37 37 chr4 31825910 31826285 -170502062 - THE1C LTR MaLR 0 375 1 205 330 38 57 chr4 31826702 31826911 -170501436 + L2 LINE L2 3047 3251 -62 9491 89 17 0 chr4 31827347 31829466 -170498881 + L1PA7 LINE L1 4012 6146 -8 41 58 0 0 chr4 31829842 31829911 -170498436 + AT_rich Low_complexity Low_complexity 1 69 0 222 278 62 62 chr4 31830226 31830370 -170497977 - MIR SINE MIR 0 262 119 238 238 124 21 chr4 31830377 31830570 -170497777 - MER97a DNA MER1_type? -23 871 659 196 224 0 24 chr4 31830676 31830761 -170497586 + (CATA)n Simple_repeat Simple_repeat 1 83 0 267 150 0 0 chr4 31830908 31830948 -170497399 - 5S rRNA rRNA -81 40 1 3901 187 9 15 chr4 31830948 31831582 -170496765 + L1PA15 LINE L1 4623 5259 -906 1792 123 64 131 chr4 31831582 31831765 -170496582 + THE1B LTR MaLR 1 146 -218 2197 114 0 0 chr4 31831765 31832054 -170496293 - AluY SINE Alu -22 289 1 1792 123 64 131 chr4 31832054 31832260 -170496087 + THE1B LTR MaLR 146 364 0 3901 187 9 15 chr4 31832260 31832473 -170495874 + L1PA15 LINE L1 5259 5472 -693 2872 138 4 17 chr4 31832473 31832937 -170495410 + LTR22A LTR ERVK 1 458 0 3901 187 9 15 chr4 31832937 31833397 -170494950 + L1PA15 LINE L1 5472 5918 -247 1776 139 7 4 chr4 31833397 31833677 -170494670 + L1PA15 LINE L1 5868 6148 -17 3878 16 0 2 chr4 31833678 31834123 -170494224 + L1PA3 LINE L1 5698 6141 -14 541 338 68 18 chr4 31834567 31834786 -170493561 + L2 LINE L2 2841 3070 -243 183 80 0 0 chr4 31834827 31834852 -170493495 + (T)n Simple_repeat Simple_repeat 1 25 0 6500 9 0 1 chr4 31834855 31835594 -170492753 - L1HS LINE L1 -5 6150 5413 385 313 103 15 chr4 31835595 31835790 -170492557 + L2 LINE L2 3100 3311 -2 269 312 77 12 chr4 31836292 31836462 -170491885 - L1ME LINE L1 -374 5747 5567 271 345 62 34 chr4 31837057 31837169 -170491178 + MIR SINE MIR 31 153 -109 1617 220 42 11 chr4 31837169 31837547 -170490800 + MLT1B LTR MaLR 1 390 0 271 345 62 34 chr4 31837547 31837643 -170490704 + MIR SINE MIR 153 245 -17 474 336 32 18 chr4 31838075 31838292 -170490055 - MIR SINE MIR -12 250 31 25 0 0 0 chr4 31838426 31838451 -170489896 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 31839176 31839198 -170489149 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 31839273 31839301 -170489046 + AT_rich Low_complexity Low_complexity 1 28 0 2156 203 115 8 chr4 31839968 31840465 -170487882 + MER44D DNA MER2_type 1 605 0 1066 141 17 167 chr4 31840966 31841265 -170487082 - L1PA16 LINE L1 -19 6147 5894 284 290 10 0 chr4 31841375 31841475 -170486872 + (TA)n Simple_repeat Simple_repeat 1 101 0 180 152 0 0 chr4 31841495 31841528 -170486819 + GA-rich Low_complexity Low_complexity 1 33 0 279 315 11 22 chr4 31841938 31842030 -170486317 + L2 LINE L2 3181 3271 -1 335 231 154 0 chr4 31842636 31842740 -170485607 + LTR40a LTR ERVL 14 133 -386 2166 183 58 2 chr4 31842741 31843157 -170485190 - Tigger2 DNA MER2_type 0 2718 2280 271 186 51 17 chr4 31843161 31843220 -170485127 + MER8 DNA MER2_type 179 239 0 925 247 120 29 chr4 31843275 31843583 -170484764 + LTR40a LTR ERVL 182 517 -2 22 0 0 0 chr4 31844293 31844315 -170484032 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 31844575 31844600 -170483747 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr4 31844751 31844779 -170483568 + AT_rich Low_complexity Low_complexity 1 28 0 311 325 8 0 chr4 31844878 31844998 -170483349 + L1MEc LINE L1 2194 2314 -4082 4525 213 139 32 chr4 31845031 31846478 -170481869 - MER52A LTR ERV1 0 1755 1 501 286 61 81 chr4 31847131 31847276 -170481071 + L1MEc LINE L1 2669 2815 -3400 1624 188 3 3 chr4 31847276 31847592 -170480755 + AluJb SINE Alu 2 317 0 501 286 61 81 chr4 31847592 31847990 -170480357 + L1MEc LINE L1 2815 3202 -3013 1122 203 173 16 chr4 31848047 31848353 -170479994 + MLT1A1 LTR MaLR 1 354 -11 227 244 0 22 chr4 31848830 31848875 -170479472 + MLT1E2 LTR MaLR 1 44 -610 2168 144 8 27 chr4 31848879 31849248 -170479099 - THE1B LTR MaLR 0 364 3 9677 114 76 3 chr4 31849250 31850722 -170477625 - THE1B-int LTR MaLR 0 1580 2 2166 132 27 30 chr4 31850723 31851088 -170477259 - THE1B LTR MaLR 0 364 1 295 182 91 39 chr4 31851097 31851174 -170477173 + MLT1E2 LTR MaLR 87 167 -457 1452 276 31 5 chr4 31851202 31851586 -170476761 + MLT1E2 LTR MaLR 233 626 0 240 216 52 21 chr4 31851586 31851683 -170476664 + L1MEc LINE L1 3727 3826 -2389 189 347 65 16 chr4 31852251 31852375 -170475972 + L2 LINE L2 3179 3308 -5 185 269 19 0 chr4 31853916 31853968 -170474379 + L2 LINE L2 3261 3313 0 276 282 8 76 chr4 31854529 31854607 -170473740 - MIR SINE MIR -100 162 95 1626 209 33 17 chr4 31854607 31854966 -170473381 + MLT1A1 LTR MaLR 1 365 0 276 282 8 76 chr4 31854966 31855018 -170473329 - MIR SINE MIR -167 95 41 726 229 6 0 chr4 31855098 31855273 -170473074 - L1MB4 LINE L1 -1 6179 6004 22 0 0 0 chr4 31855471 31855493 -170472854 + AT_rich Low_complexity Low_complexity 1 22 0 358 293 48 29 chr4 31855722 31855995 -170472352 - L1MEd LINE L1 -4975 1144 867 419 365 84 59 chr4 31856023 31856420 -170471927 - L1MEd LINE L1 -5300 819 433 372 43 0 0 chr4 31856420 31856466 -170471881 + (TG)n Simple_repeat Simple_repeat 2 47 0 419 365 84 59 chr4 31856466 31856866 -170471481 - L1MEd LINE L1 -5686 433 2 295 247 195 45 chr4 31857576 31857730 -170470617 + MIR SINE MIR 56 232 -30 32 43 0 0 chr4 31857809 31857855 -170470492 + AT_rich Low_complexity Low_complexity 1 46 0 228 67 0 0 chr4 31858128 31858158 -170470189 + (TG)n Simple_repeat Simple_repeat 1 30 0 215 311 16 0 chr4 31858258 31858319 -170470028 + L2 LINE L2 3211 3272 0 1814 182 42 37 chr4 31859061 31859490 -170468857 + L1MA7 LINE L1 5855 6285 -6 271 288 136 41 chr4 31859532 31859994 -170468353 + HAL1 LINE L1 2002 2507 0 305 314 32 52 chr4 31860507 31860755 -170467592 - HAL1 LINE L1 -785 1722 1480 457 355 94 58 chr4 31860883 31861317 -170467030 - HAL1 LINE L1 -1443 1064 615 3849 163 12 32 chr4 31861324 31862049 -170466298 + MER50 LTR ERV1 1 711 -23 2483 214 18 32 chr4 31862699 31863261 -170465086 + MER41C LTR ERV1 1 554 0 1128 265 78 51 chr4 31863604 31863732 -170464615 + MLT2B1 LTR ERVL 1 124 -396 1576 177 53 31 chr4 31863732 31864088 -170464259 - THE1B LTR MaLR 0 364 1 1128 265 78 51 chr4 31864088 31864393 -170463954 + MLT2B1 LTR ERVL 124 446 -74 14020 45 1 1 chr4 31864407 31866922 -170461425 - L1PA5 LINE L1 0 6154 3635 13543 53 1 1 chr4 31866922 31868660 -170459687 + L1P LINE L1 1934 3672 -2474 251 255 0 0 chr4 31868677 31868728 -170459619 + CT-rich Low_complexity Low_complexity 3 53 0 21 0 0 0 chr4 31868815 31868836 -170459511 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr4 31870176 31870212 -170458135 + AT_rich Low_complexity Low_complexity 1 36 0 2008 164 44 54 chr4 31870378 31870806 -170457541 - Tigger2a DNA MER2_type 0 434 11 23 92 0 0 chr4 31871247 31871312 -170457035 + AT_rich Low_complexity Low_complexity 1 65 0 25 0 0 0 chr4 31871934 31871959 -170456388 + AT_rich Low_complexity Low_complexity 1 25 0 323 153 76 23 chr4 31872038 31872214 -170456133 + (TA)n Simple_repeat Simple_repeat 1 185 0 27 29 0 0 chr4 31872333 31872367 -170455980 + AT_rich Low_complexity Low_complexity 1 34 0 849 275 35 6 chr4 31872793 31873109 -170455238 + L1 LINE L1 2849 3173 -2973 27 0 0 0 chr4 31873196 31873223 -170455124 + AT_rich Low_complexity Low_complexity 1 27 0 29 28 0 0 chr4 31873573 31873609 -170454738 + AT_rich Low_complexity Low_complexity 1 36 0 30 93 0 0 chr4 31873912 31873998 -170454349 + AT_rich Low_complexity Low_complexity 1 86 0 334 239 45 11 chr4 31874270 31874358 -170453989 + LTR33 LTR ERVL 429 519 -2 42 57 0 0 chr4 31876716 31876786 -170451561 + AT_rich Low_complexity Low_complexity 1 70 0 313 143 0 0 chr4 31877804 31877853 -170450494 - MLT2C1 LTR ERVL 0 397 349 1660 231 55 30 chr4 31877880 31878352 -170449995 + MER76 LTR ERV 205 688 0 193 404 60 48 chr4 31878629 31878963 -170449384 - L2 LINE L2 -2 3270 2933 276 368 37 7 chr4 31879262 31879398 -170448949 + MER5B DNA MER1_type 2 141 -37 41 58 0 0 chr4 31880307 31880376 -170447971 + AT_rich Low_complexity Low_complexity 1 69 0 1121 271 103 41 chr4 31880667 31881250 -170447097 + MLT1E3 LTR MaLR 5 623 -1 692 278 6 6 chr4 31882670 31882850 -170445497 + MLT1E2 LTR MaLR 15 194 -432 3706 217 25 41 chr4 31882851 31882984 -170445363 + L1 LINE L1 3212 3346 -2800 1566 213 3 0 chr4 31882984 31883280 -170445067 + AluJo SINE Alu 13 309 -3 3706 217 25 41 chr4 31883280 31884131 -170444216 + L1 LINE L1 3346 4181 -1965 1327 248 90 11 chr4 31884131 31884510 -170443837 + MLT1E2 LTR MaLR 218 626 0 180 0 0 0 chr4 31884608 31884628 -170443719 + (T)n Simple_repeat Simple_repeat 1 20 0 215 269 0 0 chr4 31885165 31885217 -170443130 + CT-rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr4 31885795 31885816 -170442531 + AT_rich Low_complexity Low_complexity 1 21 0 2069 157 86 5 chr4 31886352 31886748 -170441599 - MSTA LTR MaLR 0 428 1 247 367 47 70 chr4 31887995 31888123 -170440224 + L2 LINE L2 3143 3267 -5 3424 75 5 0 chr4 31888902 31889479 -170438868 - L1PA6 LINE L1 -451 5703 5125 3290 89 0 2 chr4 31889479 31889915 -170438432 + L1PA6 LINE L1 5696 6143 -11 801 266 114 4 chr4 31890157 31890420 -170437927 - LTR41 LTR ERVL -470 303 12 23 68 0 0 chr4 31890851 31890895 -170437452 + AT_rich Low_complexity Low_complexity 1 44 0 29 0 0 0 chr4 31890986 31891015 -170437332 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 31891124 31891155 -170437192 + AT_rich Low_complexity Low_complexity 1 31 0 2582 140 0 64 chr4 31893845 31894430 -170433917 - MER1A DNA MER1_type -5 524 1 220 378 12 12 chr4 31894820 31894902 -170433445 + L2 LINE L2 2895 2976 -338 313 230 159 18 chr4 31895005 31895118 -170433229 + L2 LINE L2 3137 3265 -7 4462 165 34 21 chr4 31895516 31896400 -170431947 - L1PB4 LINE L1 -3 6468 5574 * 11703 129 18 62 chr4 31896378 31899379 -170428968 - L1PB4 LINE L1 -3487 2974 1 1323 290 41 13 chr4 31899385 31900338 -170428009 - L1ME LINE L1 -400 5766 4796 1453 181 105 14 chr4 31900345 31900698 -170427649 - L1MA4 LINE L1 -1 6299 5915 594 203 0 8 chr4 31900700 31900818 -170427529 - L1MA10 LINE L1 -9 6325 6209 * 3243 182 45 56 chr4 31900812 31901635 -170426712 - L1MB1 LINE L1 -8 6160 5347 744 277 70 34 chr4 31901634 31902049 -170426298 - L1MB1 LINE L1 -1833 4313 3884 * 1061 311 54 62 chr4 31902084 31902715 -170425632 - MLT1E2 LTR MaLR 0 626 1 719 267 37 32 chr4 31902955 31903330 -170425017 + L1MEc LINE L1 1913 2289 -4107 852 271 39 9 chr4 31903330 31903559 -170424788 + MSTD LTR MaLR 161 396 0 180 0 0 0 chr4 31904494 31904514 -170423833 + (CAT)n Simple_repeat Simple_repeat 1 20 0 285 280 0 0 chr4 31904555 31904630 -170423717 + (AAGTG)n Simple_repeat Simple_repeat 3 77 0 186 143 0 0 chr4 31905023 31905058 -170423289 + (TAA)n Simple_repeat Simple_repeat 2 36 0 28 0 0 0 chr4 31905096 31905124 -170423223 + AT_rich Low_complexity Low_complexity 1 28 0 1727 105 19 8 chr4 31905492 31905759 -170422588 + AluSx SINE Alu 36 305 -7 182 194 0 0 chr4 31905957 31905988 -170422359 + L2 LINE L2 2220 2250 -1064 25 51 0 0 chr4 31906059 31906098 -170422249 + AT_rich Low_complexity Low_complexity 1 39 0 864 345 69 35 chr4 31908734 31909274 -170419073 - L2 LINE L2 0 3313 2756 2165 97 7 3 chr4 31909345 31909644 -170418703 + AluSx SINE Alu 1 300 -12 212 407 12 12 chr4 31909794 31909956 -170418391 + L2 LINE L2 3145 3306 -7 884 228 9 26 chr4 31910174 31910402 -170417945 - MER58A DNA MER1_type 0 224 1 359 228 69 30 chr4 31913528 31913629 -170414718 + MIR SINE MIR 127 231 -31 230 272 130 11 chr4 31913747 31913839 -170414508 + L2 LINE L2 3117 3219 -94 2753 108 49 5 chr4 31914624 31915009 -170413338 + MLT2A1 LTR ERVL 1 408 -36 243 0 0 0 chr4 31915009 31915036 -170413311 + (CA)n Simple_repeat Simple_repeat 2 28 0 2753 108 49 5 chr4 31915036 31915075 -170413272 + MLT2A1 LTR ERVL 408 444 0 1728 147 41 75 chr4 31915110 31915323 -170413024 - THE1C LTR MaLR 0 375 179 5017 67 5 0 chr4 31915323 31915978 -170412369 - L1PA7 LINE L1 -2 6152 5495 1728 147 41 75 chr4 31915978 31916152 -170412195 - THE1C LTR MaLR -196 179 1 1061 242 46 0 chr4 31916412 31916652 -170411695 - MLT1C LTR MaLR -2 465 215 206 0 0 65 chr4 31917220 31917251 -170411096 + (TTTTTA)n Simple_repeat Simple_repeat 4 32 0 27 49 0 0 chr4 31917328 31917369 -170410978 + AT_rich Low_complexity Low_complexity 1 41 0 1723 166 6 35 chr4 31917401 31917715 -170410632 + AluSx SINE Alu 1 305 -7 180 188 43 0 chr4 31919202 31919271 -170409076 + (TA)n Simple_repeat Simple_repeat 2 73 0 2224 118 0 0 chr4 31919319 31919623 -170408724 + AluSx SINE Alu 1 304 -8 1224 218 112 29 chr4 31920008 31920348 -170407999 - MLT1B LTR MaLR -2 388 21 27 0 0 0 chr4 31920737 31920764 -170407583 + AT_rich Low_complexity Low_complexity 1 27 0 1860 53 68 34 chr4 31921895 31922159 -170406188 + AluY SINE Alu 37 309 -2 33 73 0 0 chr4 31923376 31923444 -170404903 + AT_rich Low_complexity Low_complexity 1 68 0 417 287 15 46 chr4 31923444 31923639 -170404708 + L1MD2 LINE L1 4843 5031 -1115 8499 116 12 22 chr4 31923647 31923738 -170404609 + HSMAR1 DNA Mariner 9 99 -1188 1896 150 3 13 chr4 31923738 31924044 -170404303 - AluSx SINE Alu -4 308 6 8499 116 12 22 chr4 31924044 31925244 -170403103 + HSMAR1 DNA Mariner 99 1287 0 1018 260 85 9 chr4 31925253 31926232 -170402115 + L1MD2 LINE L1 5039 6142 -22 25 0 0 0 chr4 31926261 31926286 -170402061 + AT_rich Low_complexity Low_complexity 1 25 0 232 263 88 0 chr4 31927387 31927444 -170400903 + L2 LINE L2 3211 3272 0 264 303 20 0 chr4 31927848 31927947 -170400400 - L1M4 LINE L1 -1563 4583 4483 23 54 0 0 chr4 31928035 31928072 -170400275 + AT_rich Low_complexity Low_complexity 1 37 0 314 307 0 0 chr4 31928636 31928724 -170399623 + MIR SINE MIR 175 262 0 2230 119 0 0 chr4 31929045 31929357 -170398990 + AluSx SINE Alu 1 312 0 571 283 67 0 chr4 31929500 31929680 -170398667 + MIR SINE MIR 50 241 -21 23 54 0 0 chr4 31930128 31930165 -170398182 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr4 31930309 31930347 -170398000 + AT_rich Low_complexity Low_complexity 1 38 0 455 312 83 25 chr4 31930491 31930853 -170397494 - L1M4 LINE L1 -3094 3052 2670 2406 204 2 8 chr4 31930855 31931336 -170397011 - L1PA16 LINE L1 0 6166 5689 2540 138 20 20 chr4 31931337 31931821 -170396526 + L1PA16 LINE L1 5217 5700 -466 2240 74 0 0 chr4 31933009 31933291 -170395056 + AluY SINE Alu 1 282 -29 307 0 0 0 chr4 31933291 31933325 -170395022 + (CAAAA)n Simple_repeat Simple_repeat 2 110 0 216 97 0 0 chr4 31933489 31933506 -170394841 + (TG)n Simple_repeat Simple_repeat 1 48 0 216 97 0 0 chr4 31933506 31933537 -170394810 + (TG)n Simple_repeat Simple_repeat 2 32 0 554 298 75 4 chr4 31933948 31934176 -170394171 - MLT1J LTR MaLR -267 244 1 2016 112 3 7 chr4 31934176 31934489 -170393858 - AluSx SINE Alu 0 312 1 233 214 125 0 chr4 31934916 31934972 -170393375 - L2 LINE L2 -61 3252 3190 272 341 96 7 chr4 31934973 31935108 -170393239 - L3 LINE CR1 -5 1572 1426 648 356 40 21 chr4 31935477 31935856 -170392491 - L3 LINE CR1 -151 1426 1041 2335 58 3 29 chr4 31937119 31937430 -170390917 + AluY SINE Alu 1 303 -8 4069 190 7 28 chr4 31937430 31937454 -170390893 + L1PB4 LINE L1 5322 5345 -811 3344 85 22 30 chr4 31937454 31937958 -170390389 - L1PA10 LINE L1 -1 6167 5668 4069 190 7 28 chr4 31937958 31938781 -170389566 + L1PB4 LINE L1 5345 6151 -5 1175 305 77 7 chr4 31939118 31939686 -170388661 + MLT1E LTR MaLR 3 593 0 1384 215 203 6 chr4 31940193 31940542 -170387805 - MER47B DNA MER2_type 0 418 1 1651 187 3 13 chr4 31944685 31945000 -170383347 - AluJo SINE Alu 0 312 1 23 33 0 0 chr4 31945763 31945793 -170382554 + AT_rich Low_complexity Low_complexity 1 30 0 2311 97 0 3 chr4 31945898 31946208 -170382139 - AluSc SINE Alu 0 309 1 28 48 0 0 chr4 31946823 31946865 -170381482 + AT_rich Low_complexity Low_complexity 1 42 0 212 301 186 26 chr4 31947083 31947196 -170381151 + MIR SINE MIR 21 151 -57 721 237 16 31 chr4 31948029 31948223 -170380124 - MER3 DNA MER1_type -12 197 7 241 309 84 91 chr4 31948587 31949175 -170379172 - L2 LINE L2 -524 2790 2205 2285 100 3 0 chr4 31949175 31949485 -170378862 + AluSx SINE Alu 1 311 -1 241 309 84 91 chr4 31949485 31949526 -170378821 - L2 LINE L2 -1109 2205 2165 1972 148 0 0 chr4 31949665 31949962 -170378385 - AluSq SINE Alu -16 297 1 188 146 0 21 chr4 31950000 31950048 -170378299 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 1227 176 0 42 chr4 31951787 31952025 -170376322 + AluJb SINE Alu 83 310 -2 651 21 32 11 chr4 31953022 31953115 -170375232 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 22 0 0 0 chr4 31953467 31953489 -170374858 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr4 31954023 31954059 -170374288 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 31954400 31954422 -170373925 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 31954646 31954669 -170373678 + AT_rich Low_complexity Low_complexity 1 23 0 1064 133 79 49 chr4 31954821 31955024 -170373323 + Tigger2a DNA MER2_type 5 213 -221 4433 211 19 2 chr4 31955072 31956415 -170371932 + L1PA16 LINE L1 3981 5449 -717 1510 166 100 31 chr4 31956415 31956765 -170371582 - THE1C LTR MaLR 0 375 2 3746 154 52 20 chr4 31956765 31957455 -170370892 + L1PA16 LINE L1 5444 6155 -11 266 314 17 25 chr4 31959147 31959265 -170369082 - MLT1J1 LTR MaLR -329 117 1 24 53 0 0 chr4 31959345 31959383 -170368964 + AT_rich Low_complexity Low_complexity 1 38 0 1035 290 37 47 chr4 31959891 31960295 -170368052 + MLT1E2 LTR MaLR 1 400 -226 676 52 21 0 chr4 31960295 31960391 -170367956 + AluY SINE Alu 204 301 -10 919 224 14 29 chr4 31960414 31960624 -170367723 + MLT1E2 LTR MaLR 414 620 -6 28 29 0 0 chr4 31961181 31961216 -170367131 + AT_rich Low_complexity Low_complexity 1 35 0 256 213 53 27 chr4 31962007 31962082 -170366265 - L1MC4 LINE L1 -1136 6702 6573 2861 13 0 0 chr4 31962747 31963064 -170365283 - AluYb8 SINE Alu -1 317 1 36 0 0 0 chr4 31964241 31964277 -170364070 + AT_rich Low_complexity Low_complexity 1 36 0 435 38 0 0 chr4 31964505 31964558 -170363789 + (TA)n Simple_repeat Simple_repeat 1 53 0 207 329 0 66 chr4 31964733 31964809 -170363538 + L2 LINE L2 3199 3269 -3 404 310 89 71 chr4 31966064 31966789 -170361558 + L1M4 LINE L1 2830 3597 -2549 848 253 146 61 chr4 31966789 31967231 -170361116 + MLT2B1 LTR ERVL 2 489 -31 285 29 0 0 chr4 31967231 31967265 -170361082 + (CA)n Simple_repeat Simple_repeat 1 34 0 848 253 146 61 chr4 31967265 31967300 -170361047 + MLT2B1 LTR ERVL 489 520 0 404 310 89 71 chr4 31967300 31967494 -170360853 + L1M4 LINE L1 3597 3786 -2360 2618 265 37 39 chr4 31967509 31968064 -170360283 + L1MC4 LINE L1 7004 7559 -483 1787 149 0 31 chr4 31968064 31968352 -170359995 + AluSg SINE Alu 1 279 -31 207 0 0 0 chr4 31968355 31968378 -170359969 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2618 265 37 39 chr4 31968378 31968857 -170359490 + L1MC4 LINE L1 7561 8040 -2 1738 54 0 14 chr4 31969158 31969412 -170358935 + AluY SINE Alu 66 316 0 1927 194 48 139 chr4 31969563 31970166 -170358181 - MER21A LTR ERV1 -25 906 380 2419 70 0 10 chr4 31970166 31970480 -170357867 + AluY SINE Alu 1 311 0 1927 194 48 139 chr4 31970480 31970608 -170357739 - MER21A LTR ERV1 -551 380 242 905 176 16 106 chr4 31970608 31970853 -170357494 + LTR9 LTR ERV1 1 223 -389 667 68 0 0 chr4 31970853 31970941 -170357406 - AluSg/x SINE Alu -13 299 212 281 376 15 8 chr4 31970971 31971104 -170357243 + MER61E LTR ERV1 211 344 -225 * 700 216 112 43 chr4 31971096 31971374 -170356973 + LTR9 LTR ERV1 316 612 0 729 174 0 0 chr4 31971375 31971490 -170356857 - MER39 LTR ERV1 -334 373 259 547 124 7 163 chr4 31971465 31971618 -170356729 - MER21A LTR ERV1 -733 198 70 * 384 279 21 20 chr4 31971735 31971893 -170356454 + L1ME3 LINE L1 5973 6138 -24 21 0 0 0 chr4 31972169 31972190 -170356157 + AT_rich Low_complexity Low_complexity 1 21 0 2065 74 0 4 chr4 31973194 31973464 -170354883 - AluY SINE Alu -6 305 37 2155 201 111 18 chr4 31974589 31975056 -170353291 + MLT2B3 LTR ERVL 1 520 -34 387 0 0 0 chr4 31975056 31975099 -170353248 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 2155 201 111 18 chr4 31975099 31975138 -170353209 + MLT2B3 LTR ERVL 520 554 0 436 163 0 0 chr4 31975668 31975748 -170352599 - MADE1 DNA Mariner 0 80 1 18338 118 8 14 chr4 31976810 31980083 -170348264 + L1PA7 LINE L1 727 3999 -2462 9674 103 12 1 chr4 31980091 31982301 -170346046 + L1PA7 LINE L1 4243 6469 0 23 54 0 0 chr4 31983145 31983182 -170345165 + AT_rich Low_complexity Low_complexity 1 37 0 224 71 48 0 chr4 31984663 31984705 -170343642 + T-rich Low_complexity Low_complexity 2 45 0 1540 165 4 0 chr4 31984731 31984974 -170343373 - AluSx SINE Alu -66 246 3 22 0 0 0 chr4 31984985 31985007 -170343340 + AT_rich Low_complexity Low_complexity 1 22 0 299 225 25 0 chr4 31986839 31986919 -170341428 + (TA)n Simple_repeat Simple_repeat 2 83 0 12804 170 25 6 chr4 31986919 31989291 -170339056 + Tigger1 DNA MER2_type 1 2418 0 32 43 0 0 chr4 31989609 31989655 -170338692 + AT_rich Low_complexity Low_complexity 1 46 0 32 26 0 0 chr4 31991132 31991171 -170337176 + AT_rich Low_complexity Low_complexity 1 39 0 1360 210 0 41 chr4 31991775 31992105 -170336242 + AluJo SINE Alu 4 321 0 1748 167 7 0 chr4 31992228 31992534 -170335813 + AluSx SINE Alu 1 308 0 302 323 92 28 chr4 31992648 31992865 -170335482 + L1M4 LINE L1 3480 3710 -2436 279 418 46 8 chr4 31993208 31993447 -170334900 + MIR SINE MIR 3 250 -12 1750 88 0 0 chr4 31993554 31993782 -170334565 - AluSg/x SINE Alu -4 308 81 180 111 0 0 chr4 31994426 31994453 -170333894 + (T)n Simple_repeat Simple_repeat 1 27 0 208 418 11 0 chr4 31994826 31994917 -170333430 - L2 LINE L2 -331 2982 2891 1102 238 43 68 chr4 31995384 31995706 -170332641 - MLT1D LTR MaLR -13 492 163 2186 108 3 0 chr4 31995706 31996001 -170332346 + AluSg SINE Alu 1 296 -14 1102 238 43 68 chr4 31996001 31996027 -170332320 - MLT1D LTR MaLR -342 163 138 240 35 0 0 chr4 31996027 31996056 -170332291 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1102 238 43 68 chr4 31996056 31996230 -170332117 - MLT1D LTR MaLR -367 138 1 202 154 0 26 chr4 31996283 31996322 -170332025 + (TAA)n Simple_repeat Simple_repeat 2 39 0 22 0 0 0 chr4 31996940 31996962 -170331385 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 31997520 31997541 -170330806 + AT_rich Low_complexity Low_complexity 1 21 0 1164 208 140 4 chr4 31997542 31997792 -170330555 + AluJb SINE Alu 1 284 -18 394 106 76 0 chr4 31997804 31997870 -170330477 + MADE1 DNA Mariner 3 73 -7 384 22 0 0 chr4 31998581 31998626 -170329721 + (TG)n Simple_repeat Simple_repeat 1 45 0 184 229 12 108 chr4 31999766 31999849 -170328498 - MIR SINE MIR -59 203 129 1189 48 0 0 chr4 32000537 32000682 -170327665 + AluY SINE Alu 1 145 -166 21 57 0 0 chr4 32001015 32001050 -170327297 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr4 32001249 32001273 -170327074 + AT_rich Low_complexity Low_complexity 1 24 0 298 353 139 5 chr4 32002238 32002439 -170325908 - MIR SINE MIR -1 261 34 2332 73 3 0 chr4 32002712 32003012 -170325335 + AluY SINE Alu 1 301 -10 56 33 0 0 chr4 32003618 32003678 -170324669 + AT_rich Low_complexity Low_complexity 1 60 0 1195 123 0 0 chr4 32004077 32004248 -170324099 - AluSp SINE Alu -6 307 137 25 51 0 0 chr4 32004280 32004319 -170324028 + AT_rich Low_complexity Low_complexity 1 39 0 192 77 0 0 chr4 32004677 32004703 -170323644 + (TG)n Simple_repeat Simple_repeat 2 27 0 1871 103 60 21 chr4 32006642 32006923 -170321424 + AluSx SINE Alu 9 300 -12 808 248 57 30 chr4 32007547 32007777 -170320570 + MIR SINE MIR 1 236 -26 2645 35 0 0 chr4 32009411 32009721 -170318626 - AluY SINE Alu -1 310 1 1408 103 0 77 chr4 32009721 32009971 -170318376 - L1PA13 LINE L1 -13 6150 5919 283 270 0 14 chr4 32010852 32010926 -170317421 - MER94 DNA DNA -23 111 39 2731 28 0 3 chr4 32012819 32013143 -170315204 - L1PA2 LINE L1 -6 6149 5827 219 139 0 0 chr4 32013272 32013308 -170315039 + (TG)n Simple_repeat Simple_repeat 1 36 0 338 303 5 96 chr4 32013409 32013627 -170314720 - MIR SINE MIR -2 260 63 725 278 27 36 chr4 32013662 32013885 -170314462 - MER58A DNA MER1_type -2 222 2 244 319 57 43 chr4 32014915 32015056 -170313291 - MLT1I LTR MaLR -266 143 1 649 250 11 22 chr4 32015242 32015426 -170312921 + L1M2a LINE L1 3 184 -6984 * 1005 228 50 0 chr4 32015420 32015661 -170312686 + L1MA6 LINE L1 6034 6286 -14 2370 66 3 3 chr4 32015661 32015966 -170312381 - AluY SINE Alu -6 305 1 284 374 50 0 chr4 32016367 32016546 -170311801 + MIR SINE MIR 74 261 -1 1539 201 3 26 chr4 32017037 32017345 -170311002 + AluJo SINE Alu 1 301 -11 2319 72 7 0 chr4 32018484 32018777 -170309570 + AluY SINE Alu 1 295 -16 357 338 46 72 chr4 32019343 32019757 -170308590 - L1M2 LINE L1 -5445 1404 1002 330 154 39 0 chr4 32019942 32020020 -170308327 + (TA)n Simple_repeat Simple_repeat 2 82 0 313 279 0 0 chr4 32020025 32020104 -170308243 - L1MC4 LINE L1 -1340 6702 6624 5607 157 27 12 chr4 32020654 32021728 -170306619 + L1MA4A LINE L1 5207 6297 -6 549 333 98 20 chr4 32022525 32022976 -170305371 + MLT1H1 LTR MaLR 37 522 -33 372 103 13 39 chr4 32023418 32023496 -170304851 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 1664 132 114 0 chr4 32023521 32023793 -170304554 - AluSx SINE Alu -9 303 1 245 191 96 78 chr4 32023980 32024095 -170304252 - MIR SINE MIR -41 221 105 2209 223 39 4 chr4 32024567 32025060 -170303287 + LTR53 LTR ERVL 10 519 0 1070 169 11 0 chr4 32025790 32025974 -170302373 + THE1C LTR MaLR 3 188 -187 480 129 0 0 chr4 32025995 32026065 -170302282 + THE1C LTR MaLR 306 375 0 8240 205 36 39 chr4 32026065 32027644 -170300703 + THE1C-int LTR MaLR 1 1574 -6 1443 188 63 28 chr4 32027650 32028012 -170300335 + THE1C LTR MaLR 1 375 0 1212 230 93 93 chr4 32029341 32029929 -170298418 - MLT1E2 LTR MaLR -4 622 59 2064 184 29 24 chr4 32029990 32030408 -170297939 - MSTB LTR MaLR -6 420 1 23 86 0 0 chr4 32031274 32031332 -170297015 + AT_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr4 32031614 32031637 -170296710 + AT_rich Low_complexity Low_complexity 1 23 0 569 278 123 71 chr4 32031673 32032097 -170296250 + MLT1H LTR MaLR 104 549 0 26 50 0 0 chr4 32032097 32032137 -170296210 + AT_rich Low_complexity Low_complexity 1 40 0 2297 138 45 24 chr4 32032251 32032670 -170295677 - MSTA LTR MaLR 0 428 1 243 0 0 0 chr4 32032686 32032713 -170295634 + (TG)n Simple_repeat Simple_repeat 2 28 0 1678 142 4 8 chr4 32032739 32032999 -170295348 - AluSq SINE Alu -53 260 2 396 208 13 0 chr4 32033550 32033627 -170294720 - MER31A LTR ERV1 0 485 408 2453 171 17 28 chr4 32033628 32034097 -170294250 + MER31A LTR ERV1 22 485 0 236 329 0 24 chr4 32034190 32034272 -170294075 + L2 LINE L2 2489 2568 -746 306 237 93 21 chr4 32034633 32034730 -170293617 + L1M4 LINE L1 3035 3138 -3008 205 345 51 51 chr4 32035112 32035126 -170293221 - L2 LINE L2 -2192 1122 1109 225 0 0 0 chr4 32035126 32035151 -170293196 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 205 345 51 51 chr4 32035151 32035278 -170293069 - L2 LINE L2 -2205 1109 978 2005 103 23 20 chr4 32035278 32035579 -170292768 + AluSq SINE Alu 1 302 -11 205 345 51 51 chr4 32035579 32035633 -170292714 - L2 LINE L2 -2335 979 926 226 351 9 35 chr4 32036247 32036361 -170291986 + L2 LINE L2 3155 3265 -7 930 194 35 30 chr4 32037774 32038006 -170290341 - L1MA4 LINE L1 -1 6299 6067 194 36 18 91 chr4 32039397 32039452 -170288895 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 68 28 0 0 chr4 32039469 32039541 -170288806 + AT_rich Low_complexity Low_complexity 1 72 0 242 237 0 0 chr4 32039541 32039617 -170288730 + A-rich Low_complexity Low_complexity 1 76 0 317 263 0 0 chr4 32039673 32039730 -170288617 + A-rich Low_complexity Low_complexity 1 57 0 34 0 0 0 chr4 32039730 32039764 -170288583 + AT_rich Low_complexity Low_complexity 1 34 0 237 229 0 31 chr4 32039768 32039864 -170288483 + A-rich Low_complexity Low_complexity 1 93 0 24 32 0 0 chr4 32040621 32040652 -170287695 + AT_rich Low_complexity Low_complexity 1 31 0 1829 180 36 30 chr4 32041059 32041421 -170286926 + THE1B LTR MaLR 1 364 0 1054 69 0 0 chr4 32041672 32041816 -170286531 - L1PA4 LINE L1 -1 6154 6011 342 0 0 0 chr4 32043792 32043830 -170284517 + (TG)n Simple_repeat Simple_repeat 1 38 0 1061 147 0 0 chr4 32045311 32045468 -170282879 + FRAM SINE Alu 1 40 0 923 198 81 127 chr4 32046102 32046210 -170282137 + MLT1B LTR MaLR 1 112 -278 1554 194 66 0 chr4 32046210 32046499 -170281848 + AluJb SINE Alu 3 310 -2 923 198 81 127 chr4 32046499 32046799 -170281548 + MLT1B LTR MaLR 112 390 0 2330 194 30 42 chr4 32046821 32047321 -170281026 + Tigger7 DNA MER2_type 10 503 -230 408 236 0 66 chr4 32047315 32047421 -170280926 + Tigger7 DNA MER2_type 2488 2586 -1 * 1031 267 105 34 chr4 32047875 32048712 -170279635 + L1ME1 LINE L1 1194 2277 -4330 1829 161 120 28 chr4 32048713 32049105 -170279242 - MSTA LTR MaLR 0 428 1 8687 158 29 20 chr4 32049105 32050670 -170277677 - MSTA-int LTR MaLR 0 1580 2 1755 167 61 19 chr4 32050671 32051030 -170277317 - THE1C LTR MaLR 0 375 2 1338 168 0 0 chr4 32051030 32051256 -170277091 - MSTA-int LTR MaLR -1352 228 3 1598 199 134 11 chr4 32051258 32051639 -170276708 - MSTA LTR MaLR 0 428 1 4241 265 62 68 chr4 32053875 32054749 -170273598 + L1ME1 LINE L1 2424 3302 -3124 1346 211 28 10 chr4 32054749 32055038 -170273309 + AluJb SINE Alu 1 294 -18 4241 265 62 68 chr4 32055038 32056897 -170271450 + L1ME1 LINE L1 3302 5097 -1329 * 4580 245 59 11 chr4 32056889 32058992 -170269355 + L1MC3 LINE L1 4443 5387 -759 188 163 23 0 chr4 32058992 32059035 -170269312 + (TA)n Simple_repeat Simple_repeat 2 45 0 2901 96 0 8 chr4 32059036 32059433 -170268914 + MLT2A1 LTR ERVL 5 398 -46 305 82 20 0 chr4 32059505 32059554 -170268793 + (TC)n Simple_repeat Simple_repeat 2 51 0 201 154 0 0 chr4 32059553 32059592 -170268755 + (TA)n Simple_repeat Simple_repeat 1 39 0 * 6227 73 26 9 chr4 32059633 32060485 -170267862 + HERVL-A1 LTR ERVL 232 1097 -4557 762 252 35 108 chr4 32060485 32060602 -170267745 + L1ME1 LINE L1 5929 6053 -393 1785 72 47 0 chr4 32060602 32060875 -170267472 + AluY SINE Alu 39 322 0 762 252 35 108 chr4 32060875 32061304 -170267043 + L1ME1 LINE L1 6053 6436 -10 26 30 0 0 chr4 32061569 32061602 -170266745 + AT_rich Low_complexity Low_complexity 1 33 0 358 380 51 25 chr4 32061678 32062033 -170266314 - L3 LINE CR1 -81 1496 1133 190 216 27 0 chr4 32063494 32063568 -170264779 + CT-rich Low_complexity Low_complexity 2 77 0 181 407 97 4 chr4 32064306 32064532 -170263815 + L2 LINE L2 2419 2665 -649 2206 81 0 14 chr4 32066250 32066565 -170261782 - AluSg SINE Alu 0 310 2 25 0 0 0 chr4 32066731 32066756 -170261591 + AT_rich Low_complexity Low_complexity 1 25 0 3059 158 81 7 chr4 32067329 32067919 -170260428 + L1PA16 LINE L1 5533 6166 0 183 188 62 0 chr4 32068063 32068111 -170260236 - MIR SINE MIR -55 207 157 28 29 0 0 chr4 32068181 32068216 -170260131 + AT_rich Low_complexity Low_complexity 1 35 0 1389 204 30 35 chr4 32068259 32068656 -170259691 - L1MB1 LINE L1 -1 6167 5773 319 163 88 6 chr4 32068657 32068817 -170259530 + (TA)n Simple_repeat Simple_repeat 2 174 0 190 103 29 44 chr4 32068822 32068890 -170259457 + (TTATA)n Simple_repeat Simple_repeat 3 69 0 22 56 0 0 chr4 32068894 32068930 -170259417 + AT_rich Low_complexity Low_complexity 1 36 0 1950 281 58 28 chr4 32068945 32070784 -170257563 - L1 LINE L1 -3714 3851 2012 189 74 0 0 chr4 32070816 32070843 -170257504 + (TC)n Simple_repeat Simple_repeat 2 28 0 526 346 76 22 chr4 32071061 32071454 -170256893 - L1 LINE L1 -5768 1728 1217 28 29 0 0 chr4 32071517 32071552 -170256795 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 32072379 32072407 -170255940 + AT_rich Low_complexity Low_complexity 1 28 0 448 213 14 85 chr4 32072466 32072607 -170255740 + L2 LINE L2 3164 3294 -19 222 320 27 13 chr4 32072636 32072711 -170255636 - L2 LINE L2 -50 3263 3188 219 132 15 59 chr4 32074336 32074404 -170253943 + (TATAA)n Simple_repeat Simple_repeat 1 65 0 3206 65 9 2 chr4 32074415 32074843 -170253504 + L1PA7 LINE L1 5724 6154 0 243 146 0 0 chr4 32074966 32075007 -170253340 + (TG)n Simple_repeat Simple_repeat 1 41 0 222 361 105 38 chr4 32075173 32075411 -170252936 + L2 LINE L2 3018 3271 -1 1660 137 70 0 chr4 32075989 32076104 -170252243 + AluSx SINE Alu 7 112 -200 423 0 0 0 chr4 32076104 32076151 -170252196 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1660 137 70 0 chr4 32076151 32076320 -170252027 + AluSx SINE Alu 112 311 -1 212 310 53 71 chr4 32076943 32077056 -170251291 + L2 LINE L2 1078 1188 -2126 439 353 148 36 chr4 32077162 32078328 -170250019 + L2 LINE L2 1367 2662 -652 286 385 61 29 chr4 32078343 32078621 -170249726 - MLT1I LTR MaLR -6 403 117 2175 60 14 3 chr4 32079898 32080181 -170248166 - AluY SINE Alu -25 286 1 213 352 0 29 chr4 32080183 32080288 -170248059 - MIR SINE MIR -20 242 141 778 271 106 41 chr4 32080663 32081077 -170247270 + MSTB2 LTR MaLR 17 457 0 26 0 0 0 chr4 32081412 32081438 -170246909 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 32081465 32081487 -170246860 + AT_rich Low_complexity Low_complexity 1 22 0 204 298 0 24 chr4 32082131 32082215 -170246132 + T-rich Low_complexity Low_complexity 1 82 0 281 335 85 30 chr4 32082465 32082665 -170245682 - MIR SINE MIR 0 262 52 1618 227 12 9 chr4 32083030 32083369 -170244978 - MER2 DNA MER2_type 0 345 6 345 82 0 0 chr4 32083372 32083421 -170244926 + (TG)n Simple_repeat Simple_repeat 2 50 0 24 0 0 0 chr4 32085364 32085388 -170242959 + AT_rich Low_complexity Low_complexity 1 24 0 57 71 0 0 chr4 32085488 32085601 -170242746 + AT_rich Low_complexity Low_complexity 1 113 0 25 31 0 0 chr4 32085829 32085861 -170242486 + AT_rich Low_complexity Low_complexity 1 32 0 1524 252 20 24 chr4 32085968 32086428 -170241919 + MER89 LTR ERV1 1 557 -2 2672 146 2 7 chr4 32086593 32087039 -170241308 - MLT2A1 LTR ERVL 0 444 1 4694 96 5 11 chr4 32087039 32087696 -170240651 - HERVL-A1 LTR ERVL 0 5654 5002 10187 65 6 0 chr4 32087796 32089068 -170239279 - HERVL-A1 LTR ERVL -684 4970 3691 468 114 71 0 chr4 32089068 32089138 -170239209 - THE1B LTR MaLR -289 75 1 10803 115 13 0 chr4 32089138 32090698 -170237649 - THE1B-int LTR MaLR 0 1580 1 2132 142 19 27 chr4 32090698 32091065 -170237282 - THE1B LTR MaLR 0 364 1 297 242 141 31 chr4 32091084 32091212 -170237135 + L1MCa LINE L1 190 331 -6233 * 585 280 110 79 chr4 32091185 32091539 -170236808 + L1MCa LINE L1 201 565 -5480 1416 240 36 65 chr4 32091650 32092452 -170235895 + L1MCa LINE L1 570 1367 -4852 208 279 15 15 chr4 32093167 32093235 -170235112 + L2 LINE L2 3014 3081 -191 22 35 0 0 chr4 32093395 32093424 -170234923 + AT_rich Low_complexity Low_complexity 1 29 0 206 278 65 56 chr4 32094040 32094148 -170234199 + MIR SINE MIR 122 230 -32 295 293 45 45 chr4 32094341 32094474 -170233873 + MIR SINE MIR 2 134 -128 194 344 16 0 chr4 32094492 32094553 -170233794 + L2 LINE L2 3251 3312 -1 32 0 0 0 chr4 32094726 32094758 -170233589 + AT_rich Low_complexity Low_complexity 1 32 0 2002 126 67 19 chr4 32097129 32097502 -170230845 - L1MA4 LINE L1 -381 5919 5529 27 62 0 0 chr4 32097673 32097721 -170230626 + AT_rich Low_complexity Low_complexity 1 48 0 1137 152 0 0 chr4 32097948 32098126 -170230221 + AluSg/x SINE Alu 134 311 -1 1915 188 38 2 chr4 32098760 32099160 -170229187 + L1MA4A LINE L1 5884 6297 -6 352 309 124 9 chr4 32099614 32099831 -170228516 + MIR SINE MIR 20 261 -1 1045 241 67 19 chr4 32099868 32100183 -170228164 - MER58B DNA MER1_type -8 333 4 410 374 19 7 chr4 32100431 32100586 -170227761 + L2 LINE L2 3116 3272 0 205 244 0 0 chr4 32102589 32102634 -170225713 + (CA)n Simple_repeat Simple_repeat 2 46 0 2146 73 4 0 chr4 32103815 32104111 -170224236 + AluY SINE Alu 9 305 0 2189 84 0 20 chr4 32104977 32105276 -170223071 - AluSc SINE Alu -11 298 6 197 389 43 32 chr4 32105631 32105816 -170222531 + MIR3 SINE MIR 17 203 -5 333 270 112 56 chr4 32106793 32106971 -170221376 - MLT1J LTR MaLR -304 207 20 2344 65 0 3 chr4 32107195 32107485 -170220862 - AluY SINE Alu -22 289 1 601 150 14 7 chr4 32107499 32107646 -170220701 + CT-rich Low_complexity Low_complexity 4 151 0 21 82 0 0 chr4 32109071 32109120 -170219227 + AT_rich Low_complexity Low_complexity 1 49 0 21 57 0 0 chr4 32109223 32109258 -170219089 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 32109471 32109493 -170218854 + AT_rich Low_complexity Low_complexity 1 22 0 180 179 0 0 chr4 32109802 32109841 -170218506 + (ATG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr4 32110171 32110193 -170218154 + AT_rich Low_complexity Low_complexity 1 22 0 242 314 98 0 chr4 32110496 32110598 -170217749 + L2 LINE L2 3160 3271 -1 461 284 36 10 chr4 32110663 32110857 -170217490 - Charlie2 DNA MER1_type 0 2862 2664 2046 90 10 51 chr4 32110950 32111262 -170217085 - AluY SINE Alu -12 299 1 249 301 80 35 chr4 32111267 32111380 -170216967 - L2 LINE L2 0 3313 3196 1003 263 53 56 chr4 32112015 32112566 -170215781 + LTR27 LTR ERV1 7 1231 -139 4439 147 53 19 chr4 32112962 32113762 -170214585 - MER4D LTR ERV1 -20 883 48 3883 152 17 20 chr4 32114160 32114858 -170213489 - MER50 LTR ERV1 -24 710 15 396 0 0 0 chr4 32116083 32116127 -170212220 + (TG)n Simple_repeat Simple_repeat 2 45 0 515 290 70 83 chr4 32116268 32116483 -170211864 - L1ME LINE L1 -5281 789 573 1489 164 3 76 chr4 32116483 32116787 -170211560 - AluJo SINE Alu -26 286 5 515 290 70 83 chr4 32116787 32117099 -170211248 - L1ME LINE L1 -5497 573 269 1375 196 39 4 chr4 32117260 32117540 -170210807 + AluJo SINE Alu 1 290 -22 475 133 12 0 chr4 32118893 32118976 -170209371 + GA-rich Low_complexity Low_complexity 3 86 0 191 149 30 30 chr4 32120829 32120896 -170207451 + (TA)n Simple_repeat Simple_repeat 2 68 0 243 286 22 0 chr4 32121829 32121920 -170206427 + (CATA)n Simple_repeat Simple_repeat 3 95 0 23 33 0 0 chr4 32122050 32122080 -170206267 + AT_rich Low_complexity Low_complexity 1 30 0 180 77 0 0 chr4 32122468 32122494 -170205853 + (CA)n Simple_repeat Simple_repeat 2 27 0 297 0 0 0 chr4 32122531 32122564 -170205783 + (TA)n Simple_repeat Simple_repeat 2 34 0 23 78 0 0 chr4 32122976 32123027 -170205320 + AT_rich Low_complexity Low_complexity 1 51 0 13606 92 28 19 chr4 32123064 32125970 -170202377 - L1PA7 LINE L1 -1 6153 3300 2396 192 70 26 chr4 32126989 32127488 -170200859 + MER44D DNA MER2_type 30 605 0 1909 132 37 0 chr4 32127614 32127910 -170200437 - AluSc SINE Alu -2 307 1 408 254 107 0 chr4 32128421 32128590 -170199757 + MER53 DNA DNA 1 187 -2 633 138 37 9 chr4 32129093 32129202 -170199145 + L1MA3 LINE L1 16 127 -7438 13370 175 36 30 chr4 32129206 32131310 -170197037 + L1MA3 LINE L1 1099 3190 -4534 1069 188 164 40 chr4 32131310 32131608 -170196739 + AluSx SINE Alu 4 332 0 13370 175 36 30 chr4 32131608 32136099 -170192248 + L1MA3 LINE L1 3190 7724 0 22 0 0 0 chr4 32136267 32136289 -170192058 + AT_rich Low_complexity Low_complexity 1 22 0 498 146 0 0 chr4 32136456 32136538 -170191809 - L1PB4 LINE L1 -7 6149 6068 3413 151 31 15 chr4 32136682 32137293 -170191054 - L1MA8 LINE L1 -318 5973 5353 296 58 0 39 chr4 32137293 32137345 -170191002 + (TTTTA)n Simple_repeat Simple_repeat 1 55 0 7280 33 6 1 chr4 32137345 32138219 -170190128 - L1PA3 LINE L1 -19 6132 5254 1738 14 0 9 chr4 32138225 32138440 -170189907 + L1PA3 LINE L1 5014 5226 -920 982 203 31 0 chr4 32138438 32138660 -170189687 - L1MA8 LINE L1 -779 5367 5139 * 875 121 0 0 chr4 32138670 32138802 -170189545 + L1MA8 LINE L1 5842 5973 -318 368 139 13 0 chr4 32138839 32138918 -170189429 + (TA)n Simple_repeat Simple_repeat 2 81 0 1483 200 71 3 chr4 32139248 32139573 -170188774 + MER7A DNA MER2_type 1 345 -1 487 174 0 0 chr4 32139574 32139672 -170188675 + L1 LINE L1 4739 4836 -1310 854 277 21 93 chr4 32139954 32140340 -170188007 - MLT1A1 LTR MaLR -7 358 1 770 269 51 78 chr4 32140343 32141340 -170187007 - L1ME LINE L1 -4594 1667 664 2347 89 0 0 chr4 32141341 32141644 -170186703 - AluY SINE Alu -8 303 1 453 335 72 24 chr4 32141666 32141959 -170186388 + L1ME LINE L1 715 1021 -5049 348 344 52 0 chr4 32142023 32142177 -170186170 - LTR16A LTR ERVL -21 429 268 * 376 346 51 0 chr4 32142174 32142330 -170186017 - LTR16A LTR ERVL -21 429 266 1076 326 69 31 chr4 32142584 32143482 -170184865 - HERV16 LTR ERVL -2731 2265 1267 272 322 64 38 chr4 32143563 32143799 -170184548 - HERV16 LTR ERVL -3836 1160 919 1816 137 0 10 chr4 32143979 32144278 -170184069 + L1PA13 LINE L1 5866 6161 -2 429 325 72 13 chr4 32144347 32144584 -170183763 - HERV16 LTR ERVL -4372 624 374 1665 278 68 46 chr4 32144780 32145965 -170182382 + L1M4 LINE L1 3710 4921 -1225 224 265 128 43 chr4 32146638 32146755 -170181592 + L2 LINE L2 3141 3267 -5 724 88 79 0 chr4 32146894 32147008 -170181339 + AluY SINE Alu 1 123 -188 2387 67 0 3 chr4 32147012 32147324 -170181023 + AluY SINE Alu 1 311 0 24 0 0 0 chr4 32147509 32147533 -170180814 + AT_rich Low_complexity Low_complexity 1 24 0 557 265 20 69 chr4 32147688 32147764 -170180583 - L1ME1 LINE L1 -20 6146 6068 1976 134 7 0 chr4 32147764 32148062 -170180285 + AluSx SINE Alu 1 300 -12 557 265 20 69 chr4 32148062 32148189 -170180158 - L1ME1 LINE L1 -98 6068 5953 1895 165 51 65 chr4 32148589 32149080 -170179267 - MER31A LTR ERV1 -1 484 1 1708 173 0 0 chr4 32149670 32149976 -170178371 - AluJb SINE Alu 0 306 1 402 370 34 0 chr4 32150289 32150408 -170177939 + L2 LINE L2 3149 3271 -1 21 36 0 0 chr4 32150521 32150549 -170177798 + AT_rich Low_complexity Low_complexity 1 28 0 1666 147 14 7 chr4 32151204 32151526 -170176821 + AluSx SINE Alu 1 324 0 361 319 64 36 chr4 32151922 32152173 -170176174 - MER90 LTR ERV1 0 614 357 2225 93 14 0 chr4 32152183 32152474 -170175873 - AluSp SINE Alu -18 295 1 806 181 12 54 chr4 32152475 32152641 -170175706 - THE1C LTR MaLR -216 159 1 1712 170 13 28 chr4 32152642 32152960 -170175387 + MSTB LTR MaLR 114 426 0 369 275 53 30 chr4 32156591 32156722 -170171625 + MIR SINE MIR 90 223 -39 191 281 56 22 chr4 32156957 32157046 -170171301 + MIR SINE MIR 104 195 -67 26 0 0 0 chr4 32157255 32157281 -170171066 + AT_rich Low_complexity Low_complexity 1 26 0 285 344 96 32 chr4 32157373 32157530 -170170817 - MIR3 SINE MIR -17 191 25 28 61 0 0 chr4 32157885 32157934 -170170413 + AT_rich Low_complexity Low_complexity 1 49 0 940 259 44 4 chr4 32158304 32158555 -170169792 - MER110A LTR ERV1 -168 300 40 291 75 0 0 chr4 32159219 32159259 -170169088 - MADE1 DNA Mariner -39 41 2 209 253 92 58 chr4 32159423 32159510 -170168837 - L2 LINE L2 -3 3310 3221 199 372 23 69 chr4 32159584 32159802 -170168545 - L2 LINE L2 -400 2914 2707 1645 169 19 24 chr4 32159832 32160301 -170168046 + L1MA8 LINE L1 5058 5525 -743 548 162 10 20 chr4 32160303 32160402 -170167945 + MER4A LTR ERV1 1 98 -566 1335 209 81 26 chr4 32160402 32160785 -170167562 + MER4A LTR ERV1 261 664 0 12527 117 160 118 chr4 32160788 32161840 -170166507 + MER4A-int LTR ERV1 1 1007 -5591 225 108 0 0 chr4 32161840 32161877 -170166470 + (TG)n Simple_repeat Simple_repeat 2 38 0 12527 117 160 118 chr4 32161877 32164361 -170163986 + MER4A-int LTR ERV1 1007 3686 -2912 * 16251 113 40 17 chr4 32164355 32166289 -170162058 + MER4A-int LTR ERV1 3837 5851 -747 2307 114 0 0 chr4 32166289 32166597 -170161750 - AluSx SINE Alu -4 308 1 16251 113 40 17 chr4 32166597 32167360 -170160987 + MER4A-int LTR ERV1 5851 6595 -3 625 120 0 20 chr4 32167367 32167467 -170160880 + MER4A LTR ERV1 1 98 -566 1620 167 20 22 chr4 32167467 32167813 -170160534 + MER4A LTR ERV1 261 664 0 3130 199 8 7 chr4 32167814 32168431 -170159916 + L1MA8 LINE L1 5527 6144 -147 254 148 37 0 chr4 32168451 32168505 -170159842 + MSTB1 LTR MaLR 55 110 -322 377 125 0 0 chr4 32168510 32168566 -170159781 + L1MB4 LINE L1 6074 6129 -51 2073 240 33 49 chr4 32168640 32169320 -170159027 + L1MD3 LINE L1 6878 7772 -223 2122 184 36 5 chr4 32169320 32169733 -170158614 + MSTB LTR MaLR 1 426 0 2073 240 33 49 chr4 32169733 32169946 -170158401 + L1MD3 LINE L1 7772 7987 -8 1637 108 0 0 chr4 32170914 32171163 -170157184 - L1P3 LINE L1 -5076 1385 1137 701 80 0 0 chr4 32171161 32171249 -170157098 - L1P3 LINE L1 -6048 413 326 * 863 148 0 0 chr4 32171336 32171464 -170156883 + FLAM_C SINE Alu 1 128 -5 338 219 0 0 chr4 32171485 32171558 -170156789 + AluJ/FRAM SINE Alu 228 300 -2 245 146 0 60 chr4 32172205 32172272 -170156075 - MLT2B1 LTR ERVL 0 554 458 210 191 0 0 chr4 32172272 32172314 -170156033 + (CATA)n Simple_repeat Simple_repeat 3 44 0 773 263 110 0 chr4 32172328 32172537 -170155810 - MER46A DNA MER2_type -3 233 2 2083 212 58 7 chr4 32172538 32172986 -170155361 - MLT2B1 LTR ERVL -45 475 5 28 0 0 0 chr4 32173343 32173371 -170154976 + AT_rich Low_complexity Low_complexity 1 28 0 262 211 0 0 chr4 32173455 32173512 -170154835 + L1MA4 LINE L1 6203 6259 -41 240 347 113 8 chr4 32173545 32173669 -170154678 - MIR SINE MIR -112 150 14 345 74 19 0 chr4 32173773 32173827 -170154520 - L1PB2 LINE L1 -2 6149 6095 3701 164 21 46 chr4 32173927 32174548 -170153799 - L1PB2 LINE L1 -219 5932 5350 15827 32 4 0 chr4 32174548 32177239 -170151108 - L1PA4 LINE L1 -1 6154 3458 3701 164 21 46 chr4 32177239 32177773 -170150574 - L1PB2 LINE L1 -801 5350 4804 887 226 65 4 chr4 32177892 32178140 -170150207 + L1P LINE L1 4871 5133 -1013 1443 139 37 8 chr4 32178140 32178385 -170149962 + L1PA15 LINE L1 5912 6163 -2 1397 269 91 38 chr4 32178385 32179380 -170148967 + L1MEc LINE L1 734 1780 -4616 26 30 0 0 chr4 32180178 32180211 -170148136 + AT_rich Low_complexity Low_complexity 1 33 0 3287 111 59 18 chr4 32180553 32181128 -170147219 + MER51C LTR ERV1 1 640 0 22 0 0 0 chr4 32181399 32181421 -170146926 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 32182086 32182109 -170146238 + AT_rich Low_complexity Low_complexity 1 23 0 2291 64 0 10 chr4 32182466 32182761 -170145586 + AluY SINE Alu 1 292 -19 595 287 44 40 chr4 32183067 32183318 -170145029 - MIR SINE MIR -4 258 7 195 129 0 0 chr4 32183496 32183527 -170144820 + (CATATA)n Simple_repeat Simple_repeat 5 35 0 33 0 0 0 chr4 32183896 32183929 -170144418 + AT_rich Low_complexity Low_complexity 1 33 0 350 21 21 0 chr4 32184241 32184288 -170144059 + (CA)n Simple_repeat Simple_repeat 2 49 0 1606 233 125 25 chr4 32184473 32184904 -170143443 + MLT2B1 LTR ERVL 1 484 -36 207 0 0 0 chr4 32184904 32184927 -170143420 + (TA)n Simple_repeat Simple_repeat 2 24 0 1606 233 125 25 chr4 32184927 32184968 -170143379 + MLT2B1 LTR ERVL 484 520 0 23 33 0 0 chr4 32185517 32185547 -170142800 + AT_rich Low_complexity Low_complexity 1 30 0 2056 136 0 0 chr4 32186297 32186605 -170141742 + AluSg SINE Alu 1 308 -2 309 26 0 0 chr4 32188092 32188130 -170140217 + (CA)n Simple_repeat Simple_repeat 1 38 0 25 75 0 0 chr4 32188314 32188367 -170139980 + AT_rich Low_complexity Low_complexity 1 53 0 1389 51 0 61 chr4 32188448 32188645 -170139702 + AluY SINE Alu 98 322 0 270 50 0 25 chr4 32188645 32188685 -170139662 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 256 298 12 48 chr4 32188775 32188859 -170139488 + L2 LINE L2 3184 3264 -8 22 35 0 0 chr4 32188954 32188983 -170139364 + AT_rich Low_complexity Low_complexity 1 29 0 1997 125 0 7 chr4 32189786 32190082 -170138265 - AluSx SINE Alu -16 296 3 7415 34 3 0 chr4 32190341 32191711 -170136636 - L1PA4 LINE L1 0 6155 4783 228 188 0 167 chr4 32191847 32191943 -170136404 - MADE1 DNA Mariner 0 80 1 1055 130 4 141 chr4 32192062 32192331 -170136016 - L1MA10 LINE L1 0 6334 6103 3014 160 18 7 chr4 32192468 32193019 -170135328 + L1 LINE L1 3903 4459 -1687 266 179 107 0 chr4 32193497 32193553 -170134794 - MIR SINE MIR -12 250 189 29348 116 11 85 chr4 32194938 32197773 -170130574 + L1PA7 LINE L1 13 3057 -3097 230 0 33 0 chr4 32197773 32197803 -170130544 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 29348 116 11 85 chr4 32197803 32201619 -170126728 + L1PA7 LINE L1 3057 6154 0 30 27 0 0 chr4 32202672 32202709 -170125638 + AT_rich Low_complexity Low_complexity 1 37 0 2292 204 60 49 chr4 32202763 32203391 -170124956 - MER92B LTR ERV1 0 636 2 283 276 29 9 chr4 32203965 32204070 -170124277 - LTR33 LTR ERVL 0 521 415 451 280 110 16 chr4 32204207 32204389 -170123958 - LTR33 LTR ERVL -311 210 12 1967 151 3 3 chr4 32204526 32204831 -170123516 - AluSx SINE Alu -2 310 6 22 0 0 0 chr4 32205652 32205674 -170122673 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 32205958 32205988 -170122359 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 32206131 32206159 -170122188 + AT_rich Low_complexity Low_complexity 1 28 0 520 417 21 3 chr4 32208640 32208966 -170119381 + L2 LINE L2 2465 2796 -518 1121 43 0 0 chr4 32208967 32209106 -170119241 + L1PA6 LINE L1 6016 6154 0 23 0 0 0 chr4 32209427 32209450 -170118897 + AT_rich Low_complexity Low_complexity 1 23 0 228 331 30 30 chr4 32209505 32209638 -170118709 + L2 LINE L2 3139 3271 -42 1162 257 42 86 chr4 32209642 32209688 -170118659 - MLT2B1 LTR ERVL 0 520 474 279 0 0 0 chr4 32209688 32209719 -170118628 + (CA)n Simple_repeat Simple_repeat 2 32 0 1162 257 42 86 chr4 32209719 32210216 -170118131 - MLT2B1 LTR ERVL -46 474 1 273 307 22 22 chr4 32210253 32210390 -170117957 - MIR SINE MIR -35 227 91 290 294 124 73 chr4 32211469 32211840 -170116507 + MLT1H LTR MaLR 147 536 -13 180 152 0 0 chr4 32211959 32211992 -170116355 + T-rich Low_complexity Low_complexity 1 33 0 33 0 0 0 chr4 32212302 32212335 -170116012 + AT_rich Low_complexity Low_complexity 1 33 0 5792 217 23 6 chr4 32212631 32214049 -170114298 - L1 LINE L1 -1917 4229 2789 2493 67 0 3 chr4 32214460 32214772 -170113575 + AluY SINE Alu 1 311 0 186 259 52 17 chr4 32215141 32215199 -170113148 + L2 LINE L2 2120 2179 -1135 27 29 0 0 chr4 32218203 32218237 -170110110 + AT_rich Low_complexity Low_complexity 1 34 0 1749 318 65 32 chr4 32218296 32219290 -170109057 + L2 LINE L2 1704 2730 -584 766 212 0 24 chr4 32219309 32219474 -170108873 - FRAM SINE Alu -12 164 4 549 342 76 16 chr4 32219479 32219966 -170108381 + L2 LINE L2 2746 3258 -55 22 35 0 0 chr4 32221714 32221743 -170106604 + AT_rich Low_complexity Low_complexity 1 29 0 1477 239 43 27 chr4 32222104 32222548 -170105799 + MLT1D LTR MaLR 53 503 -2 2036 115 0 38 chr4 32222987 32223300 -170105047 + AluSx SINE Alu 1 301 -11 191 333 81 11 chr4 32223313 32223400 -170104947 - L2 LINE L2 -21 3251 3159 1930 39 0 9 chr4 32223953 32224229 -170104118 + AluY SINE Alu 55 328 0 194 394 41 12 chr4 32224392 32224562 -170103785 + MIR SINE MIR 83 257 -5 1046 159 5 10 chr4 32224929 32225124 -170103223 - L1 LINE L1 -2337 3809 3616 3525 117 2 2 chr4 32225125 32225677 -170102670 + L1PB1 LINE L1 5231 5782 -369 236 254 14 14 chr4 32225685 32225756 -170102591 + (TA)n Simple_repeat Simple_repeat 2 72 0 1927 151 5 42 chr4 32225758 32226141 -170102206 + L1PB1 LINE L1 5783 6151 0 3027 159 139 0 chr4 32226282 32226880 -170101467 - Tigger1 DNA MER2_type -1 2417 1737 323 125 0 0 chr4 32226884 32226932 -170101415 - Alu SINE Alu -11 289 242 39 74 0 0 chr4 32227441 32227522 -170100825 + AT_rich Low_complexity Low_complexity 1 81 0 669 109 6 170 chr4 32227830 32227995 -170100352 - MER20 DNA MER1_type -81 138 1 242 235 17 113 chr4 32228268 32228383 -170099964 + L1ME4a LINE L1 5491 5594 -527 343 261 29 29 chr4 32228440 32228578 -170099769 + L1ME4a LINE L1 5797 5934 -187 252 0 0 0 chr4 32228671 32228699 -170099648 + (TC)n Simple_repeat Simple_repeat 1 28 0 216 184 0 0 chr4 32229037 32229075 -170099272 + (TG)n Simple_repeat Simple_repeat 1 38 0 208 278 250 0 chr4 32229353 32229425 -170098922 + MIR SINE MIR 152 241 -21 1906 125 18 0 chr4 32230991 32231271 -170097076 + AluSx SINE Alu 1 285 -27 25 31 0 0 chr4 32231271 32231303 -170097044 + AT_rich Low_complexity Low_complexity 1 32 0 2081 113 0 7 chr4 32231578 32231869 -170096478 - AluSc SINE Alu -20 289 1 22 0 0 0 chr4 32234150 32234172 -170094175 + AT_rich Low_complexity Low_complexity 1 22 0 4435 195 40 33 chr4 32235353 32235817 -170092530 + L1MC3 LINE L1 6745 7204 -581 2571 110 3 3 chr4 32235817 32236181 -170092166 + THE1B LTR MaLR 1 364 0 4435 195 40 33 chr4 32236181 32236750 -170091597 + L1MC3 LINE L1 7204 7785 0 1103 280 26 67 chr4 32236880 32237345 -170091002 + LTR40b LTR ERVL 3 448 -14 2371 50 0 3 chr4 32237460 32237771 -170090576 - AluY SINE Alu 0 310 1 1093 218 5 41 chr4 32238132 32238409 -170089938 + MLT1D LTR MaLR 250 505 0 384 367 88 29 chr4 32238614 32238955 -170089392 - MER45C DNA AcHobo -52 901 541 298 253 63 70 chr4 32239028 32239186 -170089161 - LTR16A1 LTR ERVL -300 157 1 848 234 0 0 chr4 32239322 32239493 -170088854 + FAM SINE Alu 1 171 -4 296 305 0 0 chr4 32240646 32240723 -170087624 + MIR SINE MIR 42 118 -90 306 356 0 0 chr4 32240819 32240934 -170087413 + MIR SINE MIR 105 219 -43 2245 200 12 2 chr4 32240977 32241397 -170086950 + MSTB LTR MaLR 3 426 0 869 237 20 0 chr4 32241430 32241628 -170086719 - MLT1D LTR MaLR -297 208 7 32 26 0 0 chr4 32241921 32241960 -170086387 + AT_rich Low_complexity Low_complexity 1 39 0 196 276 23 69 chr4 32242839 32242926 -170085421 + L2 LINE L2 3229 3311 -2 212 233 62 108 chr4 32243223 32243352 -170084995 - MIR SINE MIR -14 248 126 2532 108 8 11 chr4 32243557 32243928 -170084419 - THE1C LTR MaLR -5 370 1 26 30 0 0 chr4 32244109 32244142 -170084205 + AT_rich Low_complexity Low_complexity 1 33 0 1753 49 0 0 chr4 32244427 32244652 -170083695 + L1PA4 LINE L1 5928 6152 -3 563 223 128 7 chr4 32244676 32244824 -170083523 - FRAM SINE Alu 0 166 1 1780 240 46 26 chr4 32246234 32246738 -170081609 + MER63 DNA MER1_type 546 1059 -1 1273 301 113 36 chr4 32246903 32247534 -170080813 + L1MEc LINE L1 41 719 -5677 * 2294 204 46 18 chr4 32247529 32248098 -170080249 + L1P LINE L1 4196 4780 -1366 2285 107 31 0 chr4 32248098 32248425 -170079922 - LTR12 LTR ERV1 -1 713 377 246 309 10 0 chr4 32248425 32248522 -170079825 - LTR30 LTR ERV1 -79 643 546 879 114 7 0 chr4 32248522 32248662 -170079685 - LTR12 LTR ERV1 -432 282 142 1273 91 0 11 chr4 32348677 32348852 -169979495 - AluY SINE Alu -138 173 1 247 333 27 0 chr4 32349056 32349167 -169979180 + MLT1G1 LTR MaLR 3 116 -479 * 316 340 51 61 chr4 32349143 32349596 -169978751 + MLT1H1 LTR MaLR 49 575 -20 854 189 11 49 chr4 32350175 32350360 -169977987 - MLT1B LTR MaLR -2 388 211 794 240 156 31 chr4 32350360 32350681 -169977666 - MER93b LTR ERV1 0 373 13 933 167 0 29 chr4 32350711 32350885 -169977462 - MLT1B LTR MaLR -220 170 2 895 269 107 24 chr4 32352299 32352685 -169975662 - MER93a LTR ERV1 -2 401 1 248 419 9 0 chr4 32352831 32352936 -169975411 - L2 LINE L2 -42 3230 3125 369 0 0 0 chr4 32352939 32352980 -169975367 + (TA)n Simple_repeat Simple_repeat 2 42 0 211 136 45 23 chr4 32353577 32353621 -169974726 - MIR SINE MIR -101 161 117 29 0 0 0 chr4 32355394 32355423 -169972924 + AT_rich Low_complexity Low_complexity 1 29 0 1809 109 97 31 chr4 32355535 32355884 -169972463 - THE1C LTR MaLR -3 372 1 9245 143 45 8 chr4 32355884 32357408 -169970939 - THE1C-int LTR MaLR 0 1580 1 1548 178 62 51 chr4 32357408 32357779 -169970568 - THE1C LTR MaLR 0 375 1 605 283 90 9 chr4 32358687 32358910 -169969437 - MIR SINE MIR -10 252 12 399 226 68 15 chr4 32359019 32359152 -169969195 - L1ME3 LINE L1 -7 6155 6016 965 183 41 5 chr4 32359231 32359428 -169968919 - L1MC2 LINE L1 -44 6300 6097 1223 257 15 3 chr4 32359440 32359775 -169968572 - L1M4 LINE L1 -1293 4853 4515 * 1750 269 77 23 chr4 32359771 32360655 -169967692 - L1M4 LINE L1 -2477 3669 2738 2166 230 55 10 chr4 32360764 32361489 -169966858 - L1M4 LINE L1 -2947 3199 2442 735 202 71 15 chr4 32361499 32361796 -169966551 + L1MCa LINE L1 1505 1908 -4518 1007 219 63 19 chr4 32361804 32362213 -169966134 + L1MCa LINE L1 2137 2602 -3947 5696 151 31 10 chr4 32362216 32363788 -169964559 + L1MA3 LINE L1 4693 6296 -9 544 257 0 0 chr4 32363796 32363944 -169964403 + L1MCa LINE L1 2553 2700 -3726 261 308 0 0 chr4 32363952 32364017 -169964330 + MLT1E3 LTR MaLR 99 163 -430 2062 160 21 19 chr4 32364090 32364464 -169963883 - THE1C LTR MaLR 0 375 1 1354 217 20 43 chr4 32364464 32364814 -169963533 - MLT1A1 LTR MaLR -16 349 8 1064 268 73 46 chr4 32364813 32365183 -169963164 + MLT1E3 LTR MaLR 214 624 0 * 868 309 27 0 chr4 32365185 32365486 -169962861 - L1ME LINE L1 -431 5739 5431 2326 92 0 0 chr4 32365672 32365966 -169962381 + AluSc SINE Alu 1 294 -15 407 179 0 0 chr4 32365981 32366059 -169962288 + T-rich Low_complexity Low_complexity 1 78 0 569 265 167 19 chr4 32367125 32367176 -169961171 - MIR SINE MIR -5 257 215 315 0 0 0 chr4 32367176 32367211 -169961136 + (TG)n Simple_repeat Simple_repeat 2 36 0 569 265 167 19 chr4 32367211 32367374 -169960973 - MIR SINE MIR -47 215 11 308 268 12 0 chr4 32367835 32367917 -169960430 + MLT1H LTR MaLR 128 210 -339 1957 138 52 3 chr4 32369625 32369951 -169958396 + MER61A LTR ERV1 2 343 0 429 20 0 0 chr4 32370089 32370139 -169958208 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 2154 115 0 0 chr4 32370874 32371169 -169957178 + AluSq SINE Alu 1 295 -18 419 312 193 32 chr4 32371230 32371634 -169956713 - LTR33 LTR ERVL -52 469 1 448 342 86 17 chr4 32372480 32372714 -169955633 + MIR SINE MIR 2 251 -11 495 275 72 10 chr4 32372951 32373158 -169955189 - L1ME1 LINE L1 -15 6151 5932 2221 111 7 0 chr4 32373176 32373482 -169954865 - AluSc SINE Alu -1 308 1 2484 58 0 0 chr4 32373484 32373792 -169954555 - AluY SINE Alu -3 308 1 21 0 0 0 chr4 32374332 32374353 -169953994 + AT_rich Low_complexity Low_complexity 1 21 0 373 259 77 56 chr4 32375504 32375790 -169952557 - L1MC5 LINE L1 -49 7912 7621 192 125 0 0 chr4 32377172 32377204 -169951143 + (CA)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr4 32378046 32378075 -169950272 + AT_rich Low_complexity Low_complexity 1 29 0 333 229 43 0 chr4 32378099 32378169 -169950178 + MER94 DNA DNA 1 73 -61 788 321 67 19 chr4 32378419 32378780 -169949567 - L2 LINE L2 0 3313 2936 886 293 147 90 chr4 32378799 32379566 -169948781 - L2 LINE L2 -1214 2100 1254 212 0 36 0 chr4 32379566 32379594 -169948753 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 886 293 147 90 chr4 32379594 32379886 -169948461 - L2 LINE L2 -2060 1254 980 427 302 98 71 chr4 32380239 32380649 -169947698 + L3 LINE CR1 912 1332 -245 490 196 0 165 chr4 32380683 32380841 -169947506 - L2 LINE L2 0 3313 3182 309 325 48 22 chr4 32381495 32381726 -169946621 + L1ME LINE L1 5609 5845 -325 24 77 0 0 chr4 32381879 32381931 -169946416 + AT_rich Low_complexity Low_complexity 1 52 0 30 93 0 0 chr4 32381974 32382060 -169946287 + AT_rich Low_complexity Low_complexity 1 86 0 258 311 33 11 chr4 32382079 32382177 -169946170 + MER5B DNA MER1_type 88 177 -1 233 365 101 57 chr4 32382179 32382615 -169945732 - L2 LINE L2 -587 2727 2273 309 82 0 0 chr4 32383024 32383073 -169945274 + (TG)n Simple_repeat Simple_repeat 2 50 0 1235 248 111 14 chr4 32383151 32383521 -169944826 + MLT2B1 LTR ERVL 1 420 -100 1948 134 10 3 chr4 32383521 32383826 -169944521 - AluSq SINE Alu -6 307 1 1235 248 111 14 chr4 32383826 32383887 -169944460 + MLT2B1 LTR ERVL 420 474 -46 228 167 21 0 chr4 32383891 32383939 -169944408 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 13122 155 42 16 chr4 32384253 32384371 -169943976 - Tigger1 DNA MER2_type -1 2417 2303 2303 76 0 10 chr4 32384371 32384672 -169943675 + AluY SINE Alu 1 298 -13 13122 155 42 16 chr4 32384672 32386910 -169941437 - Tigger1 DNA MER2_type -115 2303 1 1954 142 0 13 chr4 32387279 32387595 -169940752 - AluSx SINE Alu 0 312 1 3179 236 36 4 chr4 32387912 32388693 -169939654 - L1PA15-16 LINE L1 -4103 2746 1941 5545 131 9 29 chr4 32388710 32389724 -169938623 + L1PA15 LINE L1 5168 6160 -5 338 339 47 0 chr4 32390331 32390458 -169937889 + MLT1I LTR MaLR 80 212 -197 37 0 0 0 chr4 32390652 32390689 -169937658 + AT_rich Low_complexity Low_complexity 1 37 0 24 67 0 0 chr4 32390732 32390777 -169937570 + AT_rich Low_complexity Low_complexity 1 45 0 4140 123 126 120 chr4 32391070 32392466 -169935881 + pTR5 LTR ERV1 741 2438 0 535 214 0 13 chr4 32392841 32392995 -169935352 + GA-rich Low_complexity Low_complexity 2 153 0 243 0 0 0 chr4 32393393 32393420 -169934927 + (TA)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr4 32393984 32394012 -169934335 + AT_rich Low_complexity Low_complexity 1 28 0 2199 130 0 0 chr4 32394106 32394407 -169933940 + AluSq SINE Alu 1 301 -12 553 181 114 7 chr4 32394462 32394611 -169933736 + MER113 DNA MER1_type? 222 386 -135 24 53 0 0 chr4 32394875 32394913 -169933434 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr4 32395218 32395242 -169933105 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 32397208 32397232 -169931115 + AT_rich Low_complexity Low_complexity 1 24 0 2664 124 29 7 chr4 32397635 32398054 -169930293 + MSTA LTR MaLR 1 428 0 485 320 0 8 chr4 32398104 32398232 -169930115 + LTR33 LTR ERVL 33 159 -362 286 280 0 32 chr4 32399414 32399514 -169928833 + MIR SINE MIR 80 173 -35 336 24 0 0 chr4 32399802 32399843 -169928504 + (TG)n Simple_repeat Simple_repeat 2 42 0 204 102 61 0 chr4 32400151 32400200 -169928147 + (TA)n Simple_repeat Simple_repeat 1 52 0 186 43 0 0 chr4 32400690 32400713 -169927634 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr4 32400951 32400972 -169927375 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 32401469 32401497 -169926850 + AT_rich Low_complexity Low_complexity 1 28 0 222 325 229 0 chr4 32401556 32401722 -169926625 - MIR SINE MIR -19 243 40 2125 104 35 0 chr4 32401850 32402139 -169926208 - AluSp SINE Alu -14 299 1 411 303 111 33 chr4 32402590 32402677 -169925670 - L1ME3 LINE L1 -278 5884 5805 601 312 18 5 chr4 32402677 32402898 -169925449 - MER58A DNA MER1_type 0 224 1 411 303 111 33 chr4 32402898 32403199 -169925148 - L1ME3 LINE L1 -357 5805 5466 33 43 0 0 chr4 32403268 32403315 -169925032 + AT_rich Low_complexity Low_complexity 1 47 0 253 206 198 24 chr4 32403345 32403471 -169924876 - L1ME3 LINE L1 -813 5333 5186 495 301 77 30 chr4 32403608 32404056 -169924291 - L1ME3 LINE L1 -1131 5015 4543 568 309 108 35 chr4 32404345 32405394 -169922953 - L1ME3 LINE L1 -1995 4151 3027 1640 190 44 33 chr4 32405729 32406092 -169922255 + MLT1A2 LTR MaLR 8 374 0 2138 127 3 0 chr4 32406894 32407186 -169921161 - AluSq SINE Alu -20 293 1 186 43 0 0 chr4 32407189 32407212 -169921135 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1777 208 21 8 chr4 32408371 32408756 -169919591 + MLT1B LTR MaLR 1 390 0 328 298 49 94 chr4 32408879 32409144 -169919203 - L3 LINE CR1 -112 1465 1213 194 146 0 24 chr4 32409629 32409670 -169918677 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 1222 223 0 16 chr4 32409701 32409948 -169918399 - AluJo SINE Alu -28 284 42 239 351 78 20 chr4 32409954 32410199 -169918148 - L3 LINE CR1 -683 894 636 813 122 0 0 chr4 32410201 32410324 -169918023 + AluSp/q SINE Alu 188 310 -3 2083 111 30 3 chr4 32411692 32411990 -169916357 - AluSx SINE Alu -6 306 1 506 315 8 0 chr4 32412038 32412168 -169916179 - L2 LINE L2 -1 3271 3141 1156 328 118 8 chr4 32412465 32413102 -169915245 - L2 LINE L2 -343 2971 2265 2504 58 0 7 chr4 32413155 32413463 -169914884 + AluY SINE Alu 1 306 -5 656 268 53 11 chr4 32413784 32414068 -169914279 - L1ME LINE L1 -587 5575 5280 1217 227 11 15 chr4 32414100 32414360 -169913987 - MLT1A1 LTR MaLR -100 265 7 2262 106 6 0 chr4 32414535 32414846 -169913501 + AluSp SINE Alu 1 313 0 776 107 30 77 chr4 32414850 32415018 -169913329 + L1MA9 LINE L1 5276 5435 -733 801 157 0 0 chr4 32415022 32415143 -169913204 + FLAM_C SINE Alu 1 121 -22 183 80 0 0 chr4 32415143 32415168 -169913179 + (CAA)n Simple_repeat Simple_repeat 2 26 0 501 157 10 59 chr4 32415185 32415287 -169913060 + FLAM_C SINE Alu 37 133 -10 3036 183 108 32 chr4 32415288 32416069 -169912278 + L1MA9 LINE L1 5433 6272 -40 2729 141 53 9 chr4 32416121 32416576 -169911771 + MER4E LTR ERV1 1 475 -304 1638 71 26 9 chr4 32416607 32416833 -169911514 + MER4E LTR ERV1 537 766 0 227 281 135 0 chr4 32416942 32417031 -169911316 - MIR SINE MIR -103 159 59 1443 71 115 2 chr4 32417400 32417738 -169910609 + LTR7 LTR ERV1 1 448 -2 399 308 36 18 chr4 32417804 32418028 -169910319 + L2 LINE L2 1468 1695 -1619 1090 246 69 81 chr4 32418073 32418418 -169909929 - MLT1D LTR MaLR -2 503 162 2546 83 128 2 chr4 32418418 32418816 -169909531 + LTR7 LTR ERV1 1 448 -2 1090 246 69 81 chr4 32418816 32418888 -169909459 - MLT1D LTR MaLR -343 162 91 439 356 63 3 chr4 32418925 32419154 -169909193 + L2 LINE L2 2915 3166 -147 2159 112 10 0 chr4 32419154 32419449 -169908898 - AluY SINE Alu -13 298 1 439 356 63 3 chr4 32419449 32419503 -169908844 + L2 LINE L2 3166 3215 -98 3242 151 34 105 chr4 32420731 32421703 -169906644 - MER52C LTR ERV1 -2 1276 403 2659 267 20 8 chr4 32421703 32422578 -169905769 + L1PA15-16 LINE L1 2904 3789 -3060 751 241 60 53 chr4 32423178 32423575 -169904772 - MLT1A1 LTR MaLR -15 381 1 27 0 0 0 chr4 32424350 32424377 -169903970 + AT_rich Low_complexity Low_complexity 1 27 0 422 264 31 8 chr4 32424410 32424539 -169903808 - MER94 DNA DNA -1 133 2 2266 91 0 0 chr4 32425843 32426129 -169902218 - AluSx SINE Alu -26 286 1 2267 71 47 14 chr4 32426215 32426512 -169901835 - AluY SINE Alu -2 309 3 230 402 10 10 chr4 32426672 32426774 -169901573 + MIR SINE MIR 33 134 -74 34 24 0 0 chr4 32426840 32426881 -169901466 + AT_rich Low_complexity Low_complexity 1 41 0 2010 127 0 29 chr4 32427223 32427531 -169900816 + AluSg SINE Alu 1 299 -11 748 319 26 63 chr4 32427940 32428291 -169900056 + MLT1H LTR MaLR 13 350 -199 21 36 0 0 chr4 32429652 32429680 -169898667 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 32429795 32429824 -169898523 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr4 32430311 32430334 -169898013 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1452 197 3 28 chr4 32430789 32431078 -169897269 + AluJb SINE Alu 5 286 -26 300 224 0 0 chr4 32431088 32431186 -169897161 + (TA)n Simple_repeat Simple_repeat 2 99 0 359 324 99 32 chr4 32431988 32432241 -169896106 - MLT1I LTR MaLR -6 403 134 230 299 0 13 chr4 32432900 32432977 -169895370 - MER67B LTR ERV1 -540 121 46 216 323 8 46 chr4 32433291 32433421 -169894926 - L2 LINE L2 -811 2503 2379 610 224 88 44 chr4 32433602 32433852 -169894495 + LTR33A LTR ERVL 263 523 0 2158 97 0 39 chr4 32434196 32434504 -169893843 + AluSp SINE Alu 1 296 -17 376 298 43 25 chr4 32434618 32434779 -169893568 - MIR3 SINE MIR -2 206 43 2092 151 83 8 chr4 32435143 32435541 -169892806 - MSTA LTR MaLR 0 428 1 2055 123 0 32 chr4 32435832 32436142 -169892205 - AluSp SINE Alu -13 300 1 282 379 25 68 chr4 32436146 32436468 -169891879 + L2 LINE L2 2965 3272 0 328 133 24 0 chr4 32437037 32437120 -169891227 + (TA)n Simple_repeat Simple_repeat 1 85 0 212 143 18 71 chr4 32437140 32437196 -169891151 + CT-rich Low_complexity Low_complexity 2 54 0 1720 149 67 69 chr4 32439645 32440021 -169888326 - THE1C LTR MaLR 0 375 1 226 284 14 27 chr4 32440149 32440223 -169888124 + L2 LINE L2 3230 3302 -11 214 317 30 0 chr4 32441044 32441145 -169887202 + (CATA)n Simple_repeat Simple_repeat 1 104 0 22 0 0 0 chr4 32442422 32442444 -169885903 + AT_rich Low_complexity Low_complexity 1 22 0 952 308 26 4 chr4 32442582 32442848 -169885499 + MLT2E LTR ERVL 25 296 -332 463 283 24 6 chr4 32442922 32443088 -169885259 + MLT2E LTR ERVL 452 620 -8 23 68 0 0 chr4 32443114 32443158 -169885189 + AT_rich Low_complexity Low_complexity 1 44 0 271 303 48 101 chr4 32443471 32443887 -169884460 - MLT1I LTR MaLR -7 402 9 333 264 14 89 chr4 32443922 32444090 -169884257 + MIR SINE MIR 64 220 -42 374 310 26 0 chr4 32444194 32444307 -169884040 - MIR3 SINE MIR -6 202 87 288 77 0 0 chr4 32445221 32445260 -169883087 + (TG)n Simple_repeat Simple_repeat 2 40 0 2178 208 13 23 chr4 32446258 32446479 -169881868 - MLT1C LTR MaLR 0 467 245 1989 138 128 10 chr4 32446479 32446862 -169881485 - MSTA LTR MaLR 0 428 1 2178 208 13 23 chr4 32446862 32447112 -169881235 - MLT1C LTR MaLR -222 245 1 1336 166 154 37 chr4 32447411 32447736 -169880611 + MLT1A1 LTR MaLR 3 365 0 363 323 31 12 chr4 32447841 32448025 -169880322 + MIR3 SINE MIR 4 189 -66 186 43 0 0 chr4 32448836 32448859 -169879488 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1709 84 121 4 chr4 32448863 32449112 -169879235 - AluSc SINE Alu -31 278 1 225 336 47 28 chr4 32450222 32450329 -169878018 + MLT1J LTR MaLR 109 217 -294 591 150 167 146 chr4 32450342 32450588 -169877759 - LTR54B LTR ERV1 -259 251 1 3115 211 24 21 chr4 32450588 32451260 -169877087 - MER57A-int LTR ERV1 -395 7142 6469 1846 108 0 0 chr4 32451264 32451505 -169876842 + AluSc SINE Alu 1 241 -68 1002 54 27 0 chr4 32451520 32451669 -169876678 + (GAAA)n Simple_repeat Simple_repeat 2 154 0 4309 207 20 23 chr4 32451680 32452697 -169875650 - MER57A-int LTR ERV1 -1947 5590 2650 1392 169 38 89 chr4 32452706 32453461 -169874886 - MER57A-int LTR ERV1 -2280 4498 1925 30 109 0 0 chr4 32453473 32453601 -169874746 + AT_rich Low_complexity Low_complexity 1 128 0 437 231 19 0 chr4 32453723 32453827 -169874520 - MER57A-int LTR ERV1 -2878 3453 3348 380 70 0 18 chr4 32453882 32453939 -169874408 - AluS SINE Alu -226 77 22 864 155 34 63 chr4 32453967 32454174 -169874173 - MER57A-int LTR ERV1 -3043 3288 3088 305 191 0 0 chr4 32454278 32454346 -169874001 - MER57A-int LTR ERV1 -3684 1187 1120 455 239 148 68 chr4 32454381 32454645 -169873702 - MER34C LTR ERV1 -144 441 157 275 253 0 27 chr4 32454696 32454771 -169873576 - MER57A-int LTR ERV1 -3683 2648 2576 2517 42 0 0 chr4 32455259 32455569 -169872778 - AluY SINE Alu -1 310 1 221 241 36 43 chr4 32455739 32455836 -169872511 + MIR SINE MIR 16 113 -95 3498 211 9 55 chr4 32455909 32456765 -169871582 - MER57A-int LTR ERV1 -6712 825 9 1731 160 98 3 chr4 32456773 32457141 -169871206 - MER57A LTR ERV1 0 403 1 2066 109 26 7 chr4 32457975 32458278 -169870069 - AluSx SINE Alu 0 312 4 21 0 0 0 chr4 32458497 32458518 -169869829 + AT_rich Low_complexity Low_complexity 1 21 0 260 27 27 0 chr4 32458550 32458587 -169869760 + (TA)n Simple_repeat Simple_repeat 1 38 0 3160 203 29 30 chr4 32458676 32459435 -169868912 + L1MB7 LINE L1 5415 6172 -12 22 35 0 0 chr4 32459600 32459629 -169868718 + AT_rich Low_complexity Low_complexity 1 29 0 590 156 0 45 chr4 32461378 32461532 -169866815 + CT-rich Low_complexity Low_complexity 4 150 0 300 328 175 26 chr4 32463687 32463995 -169864352 + L2 LINE L2 2224 2577 -737 197 343 120 0 chr4 32464309 32464417 -169863930 + L2 LINE L2 3143 3263 -9 209 345 78 17 chr4 32464495 32464611 -169863736 + L2 LINE L2 3191 3313 0 885 135 0 0 chr4 32465458 32465584 -169862763 + FLAM_C SINE Alu 1 126 -17 8453 226 66 38 chr4 32466173 32466454 -169861893 - L1MA7 LINE L1 -6 7704 7432 2003 132 0 22 chr4 32466454 32466470 -169861877 - AluSx SINE Alu -8 304 289 801 31 0 0 chr4 32466470 32466566 -169861781 + (TTCTC)n Simple_repeat Simple_repeat 2 97 0 2003 132 0 22 chr4 32466566 32466860 -169861487 - AluSx SINE Alu -23 289 1 8453 226 66 38 chr4 32466860 32467897 -169860450 - L1MA7 LINE L1 -278 7432 6425 1926 132 7 0 chr4 32467897 32468170 -169860177 - AluSp SINE Alu -23 290 16 8453 226 66 38 chr4 32468170 32470785 -169857562 - L1MA7 LINE L1 -1285 6425 3634 685 255 48 13 chr4 32470814 32471045 -169857302 - L1MA7 LINE L1 -4486 3079 2841 890 291 5 0 chr4 32471051 32471274 -169857073 + Tigger7 DNA MER2_type 1 224 -481 452 260 29 10 chr4 32471285 32471389 -169856958 + Tigger7 DNA MER2_type 2382 2487 0 1051 267 58 24 chr4 32471389 32472226 -169856121 - L1MA7 LINE L1 -4544 2952 2008 317 225 42 0 chr4 32472299 32472370 -169855977 - MER20 DNA MER1_type -144 75 2 1033 268 94 45 chr4 32473260 32473743 -169854604 - MLT1H LTR MaLR 0 549 1 24 0 0 0 chr4 32475036 32475060 -169853287 + AT_rich Low_complexity Low_complexity 1 24 0 27 73 0 0 chr4 32475748 32475803 -169852544 + AT_rich Low_complexity Low_complexity 1 55 0 1955 138 3 3 chr4 32476758 32477063 -169851284 + AluSx SINE Alu 1 305 0 2055 140 0 9 chr4 32477653 32477968 -169850379 - AluSx SINE Alu 0 312 1 291 339 35 58 chr4 32478479 32478653 -169849694 - MIR SINE MIR -92 170 1 37 23 0 0 chr4 32478756 32478800 -169849547 + AT_rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr4 32479633 32479670 -169848677 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr4 32481014 32481045 -169847302 + AT_rich Low_complexity Low_complexity 1 31 0 234 346 149 9 chr4 32481125 32481232 -169847115 - MIR SINE MIR -119 143 22 227 241 0 96 chr4 32481227 32481310 -169847037 + MIR SINE MIR 117 191 -71 * 315 0 0 0 chr4 32482619 32482654 -169845693 + (CA)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr4 32483087 32483116 -169845231 + AT_rich Low_complexity Low_complexity 1 29 0 6666 111 26 25 chr4 32483484 32484554 -169843793 - MER11C LTR ERVK 0 1071 1 269 345 24 48 chr4 32484647 32484812 -169843535 - MER5A DNA MER1_type -28 161 1 246 267 22 67 chr4 32485002 32485092 -169843255 + L2 LINE L2 3226 3311 -2 246 265 143 41 chr4 32485370 32485468 -169842879 + LTR16C LTR ERVL 1 108 -383 256 304 29 0 chr4 32485480 32485549 -169842798 + LTR16C LTR ERVL 219 289 -202 344 264 112 8 chr4 32485588 32485713 -169842634 + LTR16C LTR ERVL 354 491 0 236 204 20 0 chr4 32485756 32485805 -169842542 + L2 LINE L2 3264 3313 0 7055 114 30 3 chr4 32486580 32487717 -169840630 - L1M1 LINE L1 -3910 3655 2488 2509 156 47 0 chr4 32487709 32488131 -169840216 - L1M1 LINE L1 -5368 2197 1756 * 306 0 0 0 chr4 32488492 32488526 -169839821 + (TG)n Simple_repeat Simple_repeat 2 35 0 558 330 21 11 chr4 32489815 32490006 -169838341 + MIR SINE MIR 37 229 -33 270 0 0 0 chr4 32490468 32490498 -169837849 + (TA)n Simple_repeat Simple_repeat 2 31 0 210 37 0 0 chr4 32490497 32490524 -169837823 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 * 1875 153 0 4 chr4 32490574 32490855 -169837492 + AluSx SINE Alu 1 280 -32 180 0 0 0 chr4 32490858 32490878 -169837469 + (TAA)n Simple_repeat Simple_repeat 2 21 0 44 35 0 0 chr4 32492278 32492336 -169836011 + AT_rich Low_complexity Low_complexity 1 58 0 3245 84 29 5 chr4 32492645 32493087 -169835260 + MLT2A2 LTR ERVL 1 453 0 626 308 66 31 chr4 32493325 32493611 -169834736 + L2 LINE L2 3003 3298 -15 1979 173 5 22 chr4 32493628 32493997 -169834350 + MER4E LTR ERV1 417 779 0 2596 35 0 6 chr4 32494188 32494499 -169833848 + AluY SINE Alu 1 309 -2 1054 236 57 67 chr4 32494722 32495195 -169833152 - LTR29 LTR ERV1 0 644 137 232 255 0 0 chr4 32495215 32495266 -169833081 - MER34C LTR ERV1 -495 90 40 309 306 0 35 chr4 32495278 32495363 -169832984 - MIR3 SINE MIR -40 168 87 2916 127 5 0 chr4 32495679 32496111 -169832236 - MER57B LTR ERV1 0 434 1 1462 100 130 4 chr4 32496111 32496342 -169832005 - MER57B-int LTR ERV1 0 7537 7278 745 131 25 8 chr4 32496354 32496476 -169831871 - LTR54B LTR ERV1 -370 128 5 11105 136 34 12 chr4 32496476 32497196 -169831151 - MER57B-int LTR ERV1 -387 7150 6447 2168 128 0 7 chr4 32497196 32497501 -169830846 + AluSc SINE Alu 1 303 -6 11105 136 34 12 chr4 32497501 32498571 -169829776 - MER57B-int LTR ERV1 -1090 6447 5321 3202 137 25 27 chr4 32498568 32499085 -169829262 - MER57B-int LTR ERV1 -5676 1861 1346 * 1302 97 0 0 chr4 32499079 32499254 -169829093 - MER57B-int LTR ERV1 -6570 967 793 * 3807 172 30 11 chr4 32499253 32499917 -169828430 - MER57B-int LTR ERV1 -6860 677 1 2939 114 14 0 chr4 32499917 32500345 -169828002 - MER57B LTR ERV1 0 434 1 282 254 63 48 chr4 32500412 32500538 -169827809 - L2 LINE L2 -18 3295 3168 484 211 141 107 chr4 32500543 32500718 -169827629 + MER101B LTR ERV1 1 192 -378 3078 199 42 83 chr4 32500718 32501727 -169826620 - LTR5 LTR ERVK -2 967 1 484 211 141 107 chr4 32501727 32501850 -169826497 + MER101B LTR ERV1 192 309 -261 671 294 0 16 chr4 32502037 32502224 -169826123 - MIR SINE MIR -16 246 63 23 33 0 0 chr4 32502481 32502511 -169825836 + AT_rich Low_complexity Low_complexity 1 30 0 564 340 220 0 chr4 32502511 32502693 -169825654 - L2 LINE L2 -546 2768 2627 202 54 27 27 chr4 32502693 32502730 -169825617 + (TA)n Simple_repeat Simple_repeat 1 37 0 564 340 220 0 chr4 32502730 32502920 -169825427 - L2 LINE L2 -687 2627 2314 1447 162 39 47 chr4 32503020 32503310 -169825037 + Charlie5 DNA MER1_type 2238 2529 -95 653 93 70 78 chr4 32503310 32503439 -169824908 + L1MA9 LINE L1 6180 6307 -5 189 0 0 0 chr4 32503444 32503465 -169824882 + (TTAAA)n Simple_repeat Simple_repeat 3 23 0 1447 162 39 47 chr4 32503465 32503550 -169824797 + Charlie5 DNA MER1_type 2533 2616 -8 275 365 13 6 chr4 32503595 32503751 -169824596 - L2 LINE L2 -1009 2305 2149 188 297 31 62 chr4 32504106 32504234 -169824113 + L2 LINE L2 2586 2709 -605 246 352 66 0 chr4 32505304 32505395 -169822952 + L2 LINE L2 3216 3312 -1 246 250 9 65 chr4 32505532 32505640 -169822707 + T-rich Low_complexity Low_complexity 2 103 0 12708 224 25 26 chr4 32505936 32507118 -169821229 - L1PB2 LINE L1 -2 6206 5024 215 0 67 0 chr4 32507118 32507148 -169821199 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1931 115 0 62 chr4 32507150 32507454 -169820893 - AluSc SINE Alu -24 285 1 12708 224 25 26 chr4 32507454 32508575 -169819772 - L1PB2 LINE L1 -1185 5023 3902 2324 78 7 3 chr4 32508575 32508883 -169819464 - AluY SINE Alu 0 311 3 12708 224 25 26 chr4 32508883 32511149 -169817198 - L1PB2 LINE L1 -2306 3902 1635 1719 163 137 11 chr4 32511149 32511529 -169816818 - MSTA LTR MaLR 0 428 1 8579 190 27 3 chr4 32511529 32513137 -169815210 - MSTA-int LTR MaLR 0 1651 5 1795 188 122 8 chr4 32513141 32513525 -169814822 - MSTA LTR MaLR 0 428 1 12708 224 25 26 chr4 32513525 32514427 -169813920 - L1PB2 LINE L1 -4575 1633 673 180 0 0 0 chr4 32514427 32514447 -169813900 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 12708 224 25 26 chr4 32514447 32514515 -169813832 - L1PB2 LINE L1 -5535 673 606 319 203 43 0 chr4 32514495 32514564 -169813783 + L1PBb LINE L1 34 105 -6099 * 2918 198 13 30 chr4 32514565 32515187 -169813160 - L1PB2 LINE L1 -5586 618 8 1471 198 4 0 chr4 32515154 32515422 -169812925 - L1PBa LINE L1 -5219 985 717 * 21 0 0 0 chr4 32515651 32515672 -169812675 + AT_rich Low_complexity Low_complexity 1 21 0 8728 192 32 26 chr4 32515677 32518686 -169809661 - L1PB3 LINE L1 -2 6209 3179 6467 84 5 0 chr4 32518695 32519652 -169808695 - L1PA8 LINE L1 0 6172 5216 204 102 61 0 chr4 32519760 32519809 -169808538 + (TA)n Simple_repeat Simple_repeat 1 52 0 23 33 0 0 chr4 32520561 32520591 -169807756 + AT_rich Low_complexity Low_complexity 1 30 0 4434 106 9 3 chr4 32520917 32521571 -169806776 - L1PA8 LINE L1 -1173 4973 4316 * 5451 196 43 5 chr4 32521563 32524569 -169803778 - L1PB3 LINE L1 -3007 3196 1 3264 276 31 29 chr4 32524540 32525676 -169802671 - L1PBa LINE L1 -5230 1633 496 * 304 258 11 22 chr4 32525668 32525757 -169802590 - L1PBa LINE L1 -6754 108 21 * 634 254 105 22 chr4 32526797 32527025 -169801322 - LTR16C LTR ERVL -7 484 238 208 353 26 17 chr4 32527080 32527196 -169801151 - MIR SINE MIR -14 248 132 26 74 0 0 chr4 32527733 32527787 -169800560 + AT_rich Low_complexity Low_complexity 1 54 0 333 356 17 0 chr4 32528783 32528898 -169799449 + L2 LINE L2 3191 3307 -6 422 314 144 15 chr4 32529022 32529293 -169799054 - L2 LINE L2 -3 3310 3005 268 345 97 0 chr4 32529467 32529612 -169798735 + L3 LINE CR1 704 862 -715 371 125 0 0 chr4 32530036 32530092 -169798255 - MSTA LTR MaLR 0 428 373 390 259 91 25 chr4 32530399 32530596 -169797751 - L1ME LINE L1 -318 5803 5594 260 231 46 0 chr4 32530991 32531056 -169797291 + LTR16A LTR ERVL 383 450 0 426 333 56 30 chr4 32531084 32531282 -169797065 - MIR SINE MIR -52 210 8 633 292 82 21 chr4 32533019 32533262 -169795085 - MLT1C LTR MaLR 0 467 210 918 169 46 46 chr4 32533561 32533780 -169794567 + pTR5 LTR ERV1 741 959 -1479 439 266 75 35 chr4 32533782 32533981 -169794366 - LTR7 LTR ERV1 -18 432 226 796 206 86 128 chr4 32534165 32534525 -169793822 - MLT2D LTR ERVL -69 345 1 201 74 0 0 chr4 32534785 32534812 -169793535 + (TG)n Simple_repeat Simple_repeat 2 28 0 22 56 0 0 chr4 32535710 32535746 -169792601 + AT_rich Low_complexity Low_complexity 1 36 0 522 225 0 8 chr4 32536343 32536463 -169791884 + L1MB4 LINE L1 5134 5252 -894 5366 129 22 10 chr4 32536465 32537354 -169790993 + L1PA5 LINE L1 5255 6154 0 2850 197 53 8 chr4 32537354 32538015 -169790332 + L1MB4 LINE L1 5490 6180 0 427 338 110 11 chr4 32538458 32538739 -169789608 + L2 LINE L2 2450 2758 -556 348 311 38 55 chr4 32539034 32539217 -169789130 + L2 LINE L2 3134 3313 0 251 343 7 89 chr4 32539393 32539539 -169788808 + L2 LINE L2 2871 3004 -268 365 394 0 21 chr4 32539573 32539715 -169788632 + L2 LINE L2 3134 3272 0 377 294 37 0 chr4 32540268 32540404 -169787943 - MIR SINE MIR 0 262 122 2357 189 101 31 chr4 32540458 32541040 -169787307 - L1MB7 LINE L1 0 6184 5562 6450 78 4 3 chr4 32541155 32542578 -169785769 - L1PA7 LINE L1 -5 6149 4718 5541 89 12 1 chr4 32542578 32542814 -169785533 + L1P LINE L1 3954 4186 -1960 2315 88 3 0 chr4 32542814 32543109 -169785238 + AluSp SINE Alu 1 296 -17 5541 89 12 1 chr4 32543109 32543644 -169784703 + L1P LINE L1 4186 4733 -1413 28 91 0 0 chr4 32543721 32543798 -169784549 + AT_rich Low_complexity Low_complexity 1 77 0 2337 203 21 6 chr4 32543798 32544280 -169784067 - L1PB4 LINE L1 0 6156 5668 1408 122 43 141 chr4 32544612 32544939 -169783408 - AluSg SINE Alu -4 296 2 867 249 18 9 chr4 32546701 32546918 -169781429 - MER20 DNA MER1_type 0 219 1 384 231 0 0 chr4 32546935 32547039 -169781308 + (TA)n Simple_repeat Simple_repeat 2 105 0 399 309 0 0 chr4 32547163 32547341 -169781006 + (CATG)n Simple_repeat Simple_repeat 2 179 0 244 225 50 25 chr4 32547387 32547467 -169780880 - L1MC4 LINE L1 -1347 6695 6614 2092 100 3 14 chr4 32547507 32547797 -169780550 - AluSp SINE Alu -26 287 1 198 103 0 0 chr4 32547886 32547915 -169780432 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr4 32548829 32548850 -169779497 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 32549012 32549039 -169779308 + AT_rich Low_complexity Low_complexity 1 27 0 214 304 193 22 chr4 32549808 32549989 -169778358 - MIR SINE MIR -11 251 40 1598 219 14 19 chr4 32550679 32551039 -169777308 + MLT1A1 LTR MaLR 1 358 -7 517 282 17 55 chr4 32551170 32551351 -169776996 + L2 LINE L2 2916 3089 -224 357 62 0 0 chr4 32551683 32551731 -169776616 + (GA)n Simple_repeat Simple_repeat 1 48 0 4705 58 3 0 chr4 32551951 32552540 -169775807 + LTR10C LTR ERV1 1 591 0 180 265 0 0 chr4 32553082 32553116 -169775231 + L3 LINE CR1 88 121 -1456 25 31 0 0 chr4 32554811 32554843 -169773504 + AT_rich Low_complexity Low_complexity 1 32 0 368 304 116 29 chr4 32554971 32555109 -169773238 + L2 LINE L2 3123 3272 0 21 0 0 0 chr4 32555837 32555858 -169772489 + AT_rich Low_complexity Low_complexity 1 21 0 708 238 33 99 chr4 32556557 32556860 -169771487 - MLT1B LTR MaLR -5 385 103 232 336 45 9 chr4 32558199 32558309 -169770038 + MIR SINE MIR 125 238 -24 616 297 91 7 chr4 32558970 32559246 -169769101 - LTR33A LTR ERVL 0 523 225 5552 118 14 3 chr4 32561871 32562978 -169765369 - L1PA15 LINE L1 -3 6162 5034 1244 226 8 0 chr4 32562978 32563239 -169765108 - L1P LINE L1 -2429 3717 3455 1603 215 0 6 chr4 32563766 32564078 -169764269 + AluJo SINE Alu 1 310 -2 589 181 35 6 chr4 32564082 32564253 -169764094 + GA-rich Low_complexity Low_complexity 2 177 0 296 62 0 42 chr4 32564260 32564308 -169764039 + (GAAA)n Simple_repeat Simple_repeat 3 48 0 342 205 36 0 chr4 32564534 32564617 -169763730 - L1MC1 LINE L1 0 6333 6248 29 0 0 0 chr4 32567222 32567251 -169761096 + AT_rich Low_complexity Low_complexity 1 29 0 1657 156 53 14 chr4 32567260 32567543 -169760804 + AluSq SINE Alu 1 294 -19 368 55 18 0 chr4 32567550 32567605 -169760742 + (TA)n Simple_repeat Simple_repeat 2 57 0 60 69 0 0 chr4 32567625 32567741 -169760606 + AT_rich Low_complexity Low_complexity 1 116 0 3031 162 66 11 chr4 32567803 32568190 -169760157 + MER4D LTR ERV1 3 430 -473 2251 150 28 2 chr4 32568190 32568583 -169759764 + MER57A LTR ERV1 1 403 0 3031 162 66 11 chr4 32568583 32568737 -169759610 + MER4D LTR ERV1 430 574 -329 33 0 0 0 chr4 32568927 32568960 -169759387 + AT_rich Low_complexity Low_complexity 1 33 0 190 276 26 26 chr4 32570231 32570307 -169758040 + L3 LINE CR1 835 910 -667 29 47 0 0 chr4 32571288 32571331 -169757016 + AT_rich Low_complexity Low_complexity 1 43 0 646 189 167 0 chr4 32571972 32572152 -169756195 + L1MB2 LINE L1 5953 6162 -9 1300 258 27 46 chr4 32572560 32573400 -169754947 + L1PA15-16 LINE L1 697 1527 -4676 2294 106 0 3 chr4 32573400 32573712 -169754635 + AluY SINE Alu 1 311 0 1300 258 27 46 chr4 32573712 32573762 -169754585 + L1PA15-16 LINE L1 1527 1576 -4627 373 278 6 23 chr4 32574449 32574625 -169753722 + L1M4 LINE L1 4887 5059 -1087 27 0 0 0 chr4 32574794 32574821 -169753526 + AT_rich Low_complexity Low_complexity 1 27 0 907 191 34 6 chr4 32575602 32575780 -169752567 + MER2 DNA MER2_type 4 186 -159 323 239 14 14 chr4 32575824 32575895 -169752452 + MER2 DNA MER2_type 270 340 -5 859 157 0 0 chr4 32576603 32576737 -169751610 + FRAM SINE Alu 1 134 -42 2150 60 19 48 chr4 32577321 32577636 -169750711 + AluY SINE Alu 1 306 -5 213 313 153 14 chr4 32578610 32578754 -169749593 - MIR SINE MIR 0 262 99 245 29 0 29 chr4 32579048 32579083 -169749264 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 984 268 84 39 chr4 32580714 32581129 -169747218 + L2 LINE L2 2310 2743 -571 1117 254 9 97 chr4 32581136 32581600 -169746747 + MLT2B1 LTR ERVL 1 423 -97 449 204 0 164 chr4 32581576 32581796 -169746551 + MLT2B1 LTR ERVL 336 519 -1 * 391 326 98 68 chr4 32581805 32582339 -169746008 + L2 LINE L2 2757 3301 -12 359 252 130 9 chr4 32582397 32582512 -169745835 - MIR SINE MIR -75 187 59 809 193 20 0 chr4 32582903 32583053 -169745294 + MLT1A1 LTR MaLR 157 309 -56 317 344 47 0 chr4 32583568 32583696 -169744651 + L1MEd LINE L1 601 734 -5385 941 237 81 38 chr4 32583698 32584095 -169744252 - MER96B DNA MER1_type 0 417 4 1607 214 19 3 chr4 32584219 32584542 -169743805 + MER4D LTR ERV1 548 875 -28 598 118 0 0 chr4 32584543 32584628 -169743719 - AluSg/x SINE Alu -20 290 206 276 125 0 0 chr4 32584628 32584668 -169743679 - Alu SINE Alu -262 40 1 358 288 100 31 chr4 32585178 32585407 -169742940 + L2 LINE L2 2732 2976 -338 1915 203 20 50 chr4 32587448 32587886 -169740461 + MSTB LTR MaLR 1 425 -1 385 102 0 0 chr4 32588148 32588207 -169740140 - Alu SINE Alu 0 301 243 311 64 0 21 chr4 32589063 32589110 -169739237 + (TA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr4 32589170 32589192 -169739155 + AT_rich Low_complexity Low_complexity 1 22 0 38 81 0 0 chr4 32589713 32589800 -169738547 + AT_rich Low_complexity Low_complexity 1 87 0 2124 150 22 8 chr4 32590239 32590598 -169737749 - THE1B LTR MaLR 0 364 1 264 394 69 12 chr4 32590662 32590822 -169737525 + L2 LINE L2 3104 3272 0 208 183 17 17 chr4 32591791 32591851 -169736496 + (TA)n Simple_repeat Simple_repeat 2 61 0 2108 51 0 104 chr4 32591923 32592266 -169736081 + AluY SINE Alu 1 310 0 225 250 50 20 chr4 32593252 32593352 -169734995 + L1ME3 LINE L1 5838 5940 -226 242 246 98 25 chr4 32593496 32593626 -169734721 + L1ME3 LINE L1 5928 6074 -96 6584 222 20 30 chr4 32594016 32596488 -169731859 - L1PA13 LINE L1 -2929 3868 1401 3320 285 26 19 chr4 32596478 32597363 -169730984 - L1PA13 LINE L1 -5896 891 1 * 605 133 0 0 chr4 32599145 32599243 -169729104 + L1PA10 LINE L1 6069 6166 -2 318 280 84 44 chr4 32599515 32599811 -169728536 + L1ME3 LINE L1 5644 5951 -211 459 288 186 11 chr4 32599841 32600018 -169728329 - MER82 DNA MER2_type -2 651 444 355 369 20 0 chr4 32600048 32600197 -169728150 + MIR SINE MIR 2 153 -109 276 30 0 0 chr4 32600237 32600270 -169728077 + (TG)n Simple_repeat Simple_repeat 2 34 0 403 220 22 0 chr4 32600281 32600372 -169727975 - MER82 DNA MER2_type -559 94 2 801 240 93 0 chr4 32600703 32600907 -169727440 + MER58A DNA MER1_type 2 224 0 21 0 0 0 chr4 32601921 32601942 -169726405 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 32602797 32602819 -169725528 + AT_rich Low_complexity Low_complexity 1 22 0 2144 119 122 13 chr4 32603532 32603586 -169724761 - MSTA LTR MaLR 0 428 381 3842 117 41 15 chr4 32603586 32603810 -169724537 + L1PA11 LINE L1 5552 5769 -405 2004 88 51 14 chr4 32603810 32604104 -169724243 + AluY SINE Alu 1 305 -6 3842 117 41 15 chr4 32604104 32604486 -169723861 + L1PA11 LINE L1 5769 6174 0 2144 119 122 13 chr4 32604486 32604817 -169723530 - MSTA LTR MaLR -47 381 1 591 339 31 8 chr4 32605735 32605992 -169722355 - LTR16B LTR ERVL -130 334 72 585 299 61 102 chr4 32606023 32606235 -169722112 + L2 LINE L2 1834 2053 -1261 3951 34 0 0 chr4 32606235 32606705 -169721642 - L1PA3 LINE L1 -3 6152 5683 585 299 61 102 chr4 32606705 32607044 -169721303 + L2 LINE L2 2053 2348 -966 2200 130 120 5 chr4 32607044 32607428 -169720919 - MSTA LTR MaLR 0 428 1 585 299 61 102 chr4 32607428 32607642 -169720705 + L2 LINE L2 2348 2569 -745 32 57 0 0 chr4 32609538 32609591 -169718756 + AT_rich Low_complexity Low_complexity 1 53 0 1144 291 17 17 chr4 32609628 32610047 -169718300 - L1ME3 LINE L1 -7 6155 5737 1408 258 67 0 chr4 32610047 32610407 -169717940 - MLT1F1 LTR MaLR 0 567 184 197 323 108 46 chr4 32611048 32611127 -169717220 + L2 LINE L2 3105 3178 -135 2093 88 4 0 chr4 32611127 32611400 -169716947 - AluSx SINE Alu -14 298 25 197 323 108 46 chr4 32611400 32611515 -169716832 + L2 LINE L2 3178 3311 -2 675 161 8 15 chr4 32613117 32613247 -169715100 - AluSq/x SINE Alu -180 133 5 1625 224 102 43 chr4 32613526 32614274 -169714073 + LTR1B LTR ERV1 1 784 -1 1988 136 0 0 chr4 32614407 32614694 -169713653 + AluSx SINE Alu 11 297 -15 27 0 0 0 chr4 32614810 32614837 -169713510 + AT_rich Low_complexity Low_complexity 1 27 0 2711 237 20 24 chr4 32615100 32615906 -169712441 - L1MA9 LINE L1 -3176 3206 2402 2245 209 71 30 chr4 32615906 32616567 -169711780 + L1MA9 LINE L1 3214 3901 -2481 1856 176 6 3 chr4 32616549 32616878 -169711469 + L1MA9 LINE L1 5705 6034 -514 * 292 123 15 15 chr4 32616880 32616945 -169711402 + (TAGA)n Simple_repeat Simple_repeat 3 67 0 2584 157 43 14 chr4 32616945 32617460 -169710887 + L1MA9 LINE L1 6019 6548 0 32 26 0 0 chr4 32617460 32617499 -169710848 + AT_rich Low_complexity Low_complexity 1 39 0 189 0 0 0 chr4 32617957 32617978 -169710369 + (TTC)n Simple_repeat Simple_repeat 1 21 0 813 192 66 0 chr4 32618226 32618377 -169709970 + MLT1B LTR MaLR 1 161 -229 2226 97 10 3 chr4 32619109 32619526 -169708821 - AluSp SINE Alu 0 419 1 26 50 0 0 chr4 32619696 32619736 -169708611 + AT_rich Low_complexity Low_complexity 1 40 0 1578 222 39 66 chr4 32619973 32620460 -169707887 - MER31A LTR ERV1 -8 477 4 21 71 0 0 chr4 32620610 32620652 -169707695 + AT_rich Low_complexity Low_complexity 1 42 0 306 331 51 17 chr4 32622455 32622633 -169705714 - MLT1L LTR MaLR -394 221 38 528 329 93 7 chr4 32623037 32623487 -169704860 - L1MEc LINE L1 -4499 2064 1576 688 307 118 52 chr4 32623509 32624714 -169703633 - L1MEc LINE L1 -5073 1490 206 562 219 9 0 chr4 32625369 32625474 -169702873 + Tigger3(Golem) DNA MER2_type 2 107 -2922 4140 124 56 27 chr4 32625477 32626244 -169702103 + Tigger3(Golem) DNA MER2_type 2240 3028 -1 1976 160 39 24 chr4 32626247 32626359 -169701988 - MLT1B LTR MaLR -3 387 278 2139 117 0 0 chr4 32626359 32626668 -169701679 - AluSc SINE Alu 0 309 1 1976 160 39 24 chr4 32626668 32626936 -169701411 - MLT1B LTR MaLR -112 278 1 888 174 7 0 chr4 32627063 32627212 -169701135 - AluJb SINE Alu -9 303 154 23 68 0 0 chr4 32627690 32627734 -169700613 + AT_rich Low_complexity Low_complexity 1 44 0 466 306 54 7 chr4 32628234 32628381 -169699966 - MIR SINE MIR -95 167 14 330 363 28 28 chr4 32628562 32628741 -169699606 - HAL1b LINE L1 -1080 268 90 33 25 0 0 chr4 32631565 32631605 -169696742 + AT_rich Low_complexity Low_complexity 1 40 0 22 94 0 0 chr4 32631976 32632040 -169696307 + AT_rich Low_complexity Low_complexity 1 64 0 1696 173 73 22 chr4 32632061 32632430 -169695917 + MLT1B LTR MaLR 3 390 0 194 248 69 69 chr4 32634091 32634192 -169694155 + MIR3 SINE MIR 94 194 -14 2005 134 0 7 chr4 32634875 32635185 -169693162 + AluSx SINE Alu 2 309 0 221 116 0 23 chr4 32635752 32635795 -169692552 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 298 397 0 9 chr4 32636150 32636266 -169692081 - MIR SINE MIR -74 134 20 21 0 0 0 chr4 32637479 32637500 -169690847 + AT_rich Low_complexity Low_complexity 1 21 0 1609 210 58 20 chr4 32639234 32639682 -169688665 + MER31B LTR ERV1 2 466 0 1041 141 78 0 chr4 32639999 32640191 -169688156 + L1MA4A LINE L1 6086 6292 -11 6053 55 0 0 chr4 32640689 32641446 -169686901 + L1PA5 LINE L1 5396 6152 -2 24 106 0 0 chr4 32641754 32641848 -169686499 + AT_rich Low_complexity Low_complexity 1 94 0 21 82 0 0 chr4 32643339 32643388 -169684959 + AT_rich Low_complexity Low_complexity 1 49 0 354 23 0 0 chr4 32643585 32643628 -169684719 + (CA)n Simple_repeat Simple_repeat 2 44 0 663 200 0 15 chr4 32643672 32643807 -169684540 - FLAM_A SINE Alu 0 133 1 335 355 91 14 chr4 32643807 32644103 -169684244 - L3 LINE CR1 -79 1498 1180 304 283 71 30 chr4 32644107 32644206 -169684141 + MER5A DNA MER1_type 10 112 -77 1559 256 85 11 chr4 32644344 32644871 -169683476 - L1ME2 LINE L1 0 6164 5599 232 208 57 0 chr4 32644937 32644990 -169683357 - L1MC4 LINE L1 -63 7979 7924 316 284 83 61 chr4 32645150 32645379 -169682968 - L1ME2 LINE L1 -10 6154 5921 1154 201 18 36 chr4 32645384 32645662 -169682685 - L1 LINE L1 -2008 4138 3866 * 4242 228 17 9 chr4 32645657 32646709 -169681638 + L1 LINE L1 4135 5194 -952 * 8888 271 45 19 chr4 32646693 32651254 -169677093 - L1PA12 LINE L1 -2025 5559 881 23 0 0 0 chr4 32651284 32651307 -169677040 + AT_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr4 32652384 32652431 -169675916 + AT_rich Low_complexity Low_complexity 1 47 0 2067 269 92 74 chr4 32653602 32654672 -169673675 - MER52A LTR ERV1 0 1755 666 2139 88 138 14 chr4 32655680 32656034 -169672313 + MLT2A1 LTR ERVL 1 398 -46 226 303 0 0 chr4 32656045 32656134 -169672213 - L1MC4 LINE L1 -1340 6702 6614 323 82 41 0 chr4 32656290 32656339 -169672008 + MLT2A2 LTR ERVL 403 453 0 1891 166 0 0 chr4 32656449 32656756 -169671591 - AluSq SINE Alu 0 307 1 1188 232 15 4 chr4 32656759 32657022 -169671325 - MER82 DNA MER2_type -187 466 201 183 102 41 20 chr4 32657313 32657362 -169670985 + (TA)n Simple_repeat Simple_repeat 2 51 0 679 257 50 0 chr4 32657366 32657568 -169670779 - MER82 DNA MER2_type -436 217 6 3934 206 31 37 chr4 32657869 32658686 -169669661 - MER21B LTR ERV1 -49 814 3 2100 120 52 63 chr4 32658759 32659201 -169669146 + LTR23 LTR ERV1 1 437 0 1717 212 57 16 chr4 32659425 32659812 -169668535 - MER87 LTR ERV1 0 541 139 2209 66 3 3 chr4 32659812 32660099 -169668248 + L1PA8 LINE L1 5398 5684 -470 3586 76 6 4 chr4 32660199 32660684 -169667663 + L1PA8 LINE L1 5684 6169 -3 644 221 7 52 chr4 32660684 32660838 -169667509 - MER87 LTR ERV1 -394 147 1 194 62 31 0 chr4 32661616 32661648 -169666699 + (TA)n Simple_repeat Simple_repeat 1 33 0 1941 132 0 30 chr4 32661678 32661974 -169666373 + AluSx SINE Alu 1 287 -25 600 123 0 0 chr4 32662090 32662204 -169666143 + (TG)n Simple_repeat Simple_repeat 2 115 0 22 35 0 0 chr4 32662403 32662432 -169665915 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 32663771 32663802 -169664545 + AT_rich Low_complexity Low_complexity 1 31 0 260 298 73 0 chr4 32664124 32664226 -169664121 + MIR SINE MIR 38 152 -66 14379 154 47 10 chr4 32664227 32666848 -169661499 + Tigger2 DNA MER2_type 1 2718 0 307 351 117 15 chr4 32667044 32667249 -169661098 + MIR SINE MIR 24 249 -13 22 35 0 0 chr4 32667614 32667643 -169660704 + AT_rich Low_complexity Low_complexity 1 29 0 7834 230 94 54 chr4 32667860 32671159 -169657188 + L1M2 LINE L1 184 3613 -3235 326 231 64 0 chr4 32671174 32671330 -169657017 + (TGAA)n Simple_repeat Simple_repeat 3 168 0 407 203 0 4 chr4 32671334 32671425 -169656922 + L1M2 LINE L1 3542 3630 -3218 1804 175 0 0 chr4 32671448 32671739 -169656608 + AluJb SINE Alu 1 291 -21 625 236 11 6 chr4 32671741 32671915 -169656432 + L1M2 LINE L1 3606 3780 -3068 * 1525 203 50 3 chr4 32671911 32672275 -169656072 + L1M2 LINE L1 4392 4772 -2076 324 247 12 0 chr4 32672270 32672355 -169655992 - L1MC4a LINE L1 -1505 6303 6218 * 273 128 0 0 chr4 32672444 32672491 -169655856 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 213 108 0 0 chr4 32672613 32672650 -169655697 + (TG)n Simple_repeat Simple_repeat 1 37 0 261 208 42 94 chr4 32673103 32673199 -169655148 - MER96B DNA MER1_type? -16 401 311 782 228 12 50 chr4 32673201 32673442 -169654905 + MER96B DNA MER1_type? 186 417 0 273 75 0 0 chr4 32673491 32673531 -169654816 + (TG)n Simple_repeat Simple_repeat 2 41 0 22 35 0 0 chr4 32673699 32673728 -169654619 + AT_rich Low_complexity Low_complexity 1 29 0 566 295 112 18 chr4 32674364 32674703 -169653644 + L1MB5 LINE L1 31 401 -5983 2844 252 53 32 chr4 32674797 32676963 -169651384 + L1MB5 LINE L1 566 2867 -3515 829 225 5 132 chr4 32677014 32677400 -169650947 + L1MB5 LINE L1 3735 4071 -2311 1920 140 39 16 chr4 32677422 32677729 -169650618 + THE1B LTR MaLR 51 364 0 11215 109 14 0 chr4 32677729 32679284 -169649063 + THE1B-int LTR MaLR 1 1577 -3 2022 143 57 20 chr4 32679287 32679638 -169648709 + THE1B LTR MaLR 1 364 0 1474 256 92 17 chr4 32679643 32680285 -169648062 + L1MB5 LINE L1 4101 4790 -1592 1307 228 115 47 chr4 32680285 32680693 -169647654 + MLT2B3 LTR ERVL 1 436 -118 2648 243 56 40 chr4 32680712 32681138 -169647209 + L1MB5 LINE L1 4765 5183 -1227 1569 240 14 6 chr4 32681138 32681500 -169646847 - MLT1A1 LTR MaLR 0 365 1 2648 243 56 40 chr4 32681500 32682379 -169645968 + L1MB5 LINE L1 5183 6100 -310 2504 61 0 3 chr4 32682379 32682689 -169645658 - AluY SINE Alu -2 309 1 2648 243 56 40 chr4 32682689 32683006 -169645341 + L1MB5 LINE L1 6100 6410 0 1867 182 16 16 chr4 32683728 32684096 -169644251 + L1PA15 LINE L1 5785 6152 -13 249 156 0 0 chr4 32684675 32684720 -169643627 - L1PA15 LINE L1 -134 6031 5987 225 363 49 0 chr4 32684780 32684882 -169643465 - MIR SINE MIR 0 262 156 182 272 40 72 chr4 32684918 32685027 -169643320 + MIR SINE MIR 140 247 -15 2026 136 0 11 chr4 32685027 32685341 -169643006 - AluSx SINE Alu 0 311 1 182 272 40 72 chr4 32685341 32685355 -169642992 + MIR SINE MIR 247 260 -2 2267 117 11 0 chr4 32685721 32686071 -169642276 - L1PA8 LINE L1 -1 6171 5818 6834 114 0 9 chr4 32686071 32687152 -169641195 + L1P LINE L1 2730 3800 -2346 329 285 16 16 chr4 32687203 32687326 -169641021 + GA-rich Low_complexity Low_complexity 2 124 0 184 89 22 22 chr4 32688327 32688372 -169639975 + (TTA)n Simple_repeat Simple_repeat 2 46 0 44 56 0 0 chr4 32688374 32688446 -169639901 + AT_rich Low_complexity Low_complexity 1 72 0 433 321 33 37 chr4 32688532 32688775 -169639572 - L1ME4a LINE L1 -188 5933 5692 217 143 18 71 chr4 32689957 32690013 -169638334 + T-rich Low_complexity Low_complexity 1 53 0 28 0 0 0 chr4 32691252 32691280 -169637067 + AT_rich Low_complexity Low_complexity 1 28 0 1855 130 18 18 chr4 32691527 32691812 -169636535 + AluSx SINE Alu 1 285 -27 23 0 0 0 chr4 32695240 32695263 -169633084 + AT_rich Low_complexity Low_complexity 1 23 0 487 364 124 19 chr4 32695531 32696094 -169632253 - L2 LINE L2 -1750 1564 943 2681 190 19 2 chr4 32696293 32696772 -169631575 - MLT2B1 LTR ERVL -33 487 1 204 254 32 48 chr4 32696850 32696913 -169631434 - L2 LINE L2 -4 3309 3248 2800 19 0 0 chr4 32697290 32697601 -169630746 - AluYa5 SINE Alu 0 311 1 348 286 76 54 chr4 32697771 32697995 -169630352 + L1MC4a LINE L1 5675 5903 -1905 405 311 146 33 chr4 32699193 32699405 -169628942 + MIR SINE MIR 1 236 -26 425 335 97 5 chr4 32699406 32699591 -169628756 - MIR SINE MIR 0 262 61 3139 169 72 83 chr4 32699630 32700709 -169627638 + L1MA6 LINE L1 5171 6290 -7 222 379 7 14 chr4 32701143 32701288 -169627059 - L3b LINE CR1 -329 1254 1111 22 0 0 0 chr4 32702078 32702100 -169626247 + AT_rich Low_complexity Low_complexity 1 22 0 536 369 58 14 chr4 32702163 32702594 -169625753 - L1 LINE L1 -743 5403 4954 721 91 0 18 chr4 32702608 32702718 -169625629 + AluY SINE Alu 198 305 -6 2520 233 100 5 chr4 32702813 32703561 -169624786 - MER97a DNA MER1_type? -14 880 62 31 26 0 0 chr4 32704783 32704821 -169623526 + AT_rich Low_complexity Low_complexity 1 38 0 204 231 0 0 chr4 32705230 32705269 -169623078 + (CATA)n Simple_repeat Simple_repeat 2 40 0 243 190 0 52 chr4 32705274 32705332 -169623015 - LTR66 LTR ERVL -171 439 385 316 359 39 32 chr4 32705559 32705715 -169622632 - MIR SINE MIR -78 184 28 2965 221 13 9 chr4 32705869 32706614 -169621733 - L1PA16 LINE L1 -752 5394 4647 * 4012 146 19 5 chr4 32706613 32707283 -169621064 + L1PA16 LINE L1 5402 6081 -85 979 190 20 20 chr4 32707424 32707671 -169620676 - L1 LINE L1 -752 5394 5148 317 172 62 0 chr4 32707669 32707733 -169620614 - L1MA7 LINE L1 -51 6240 6173 * 296 118 191 0 chr4 32707727 32707795 -169620552 + L1PA16 LINE L1 6077 6157 -9 * 998 127 0 20 chr4 32708116 32708309 -169620038 + AluSg/x SINE Alu 137 326 0 22 80 0 0 chr4 32708743 32708793 -169619554 + AT_rich Low_complexity Low_complexity 1 50 0 4184 195 19 8 chr4 32709465 32710990 -169617357 - L1MA7 LINE L1 -42 6249 4669 1705 193 0 7 chr4 32711368 32711668 -169616679 - AluJb SINE Alu -8 304 7 33 43 0 0 chr4 32711745 32711792 -169616555 + AT_rich Low_complexity Low_complexity 1 47 0 271 301 25 45 chr4 32711810 32712009 -169616338 - L1MEd LINE L1 -4881 1238 1044 34 55 0 0 chr4 32712049 32712104 -169616243 + AT_rich Low_complexity Low_complexity 1 55 0 4398 191 38 13 chr4 32712158 32713000 -169615347 - L1PB4 LINE L1 0 6156 5287 375 41 0 0 chr4 32713000 32713049 -169615298 + (TG)n Simple_repeat Simple_repeat 2 50 0 4398 191 38 13 chr4 32713049 32713328 -169615019 - L1PB4 LINE L1 -869 5287 5017 8465 175 43 6 chr4 32713381 32714968 -169613379 - MSTA-int LTR MaLR -4 1647 2 2219 196 16 7 chr4 32714969 32715393 -169612954 - MSTA LTR MaLR 0 428 1 538 308 87 26 chr4 32715417 32715807 -169612540 - L1MEd LINE L1 -5221 898 485 780 219 0 0 chr4 32715809 32715955 -169612392 + FRAM SINE Alu 1 146 -30 546 67 0 0 chr4 32715957 32716032 -169612315 + (CATA)n Simple_repeat Simple_repeat 2 76 0 419 350 37 37 chr4 32716153 32716476 -169611871 - L1MEd LINE L1 -5733 386 64 555 345 48 16 chr4 32716516 32716832 -169611515 + L2 LINE L2 1876 2201 -1113 250 370 82 19 chr4 32716848 32717165 -169611182 + L2 LINE L2 2687 3023 -249 207 311 67 59 chr4 32717238 32717373 -169610974 - L2 LINE L2 -20 3293 3158 203 403 0 0 chr4 32717476 32717548 -169610799 + L2 LINE L2 3188 3259 -13 719 103 0 0 chr4 32717552 32717659 -169610688 + L1MA4 LINE L1 6188 6294 -6 331 280 7 20 chr4 32719594 32719744 -169608603 + (TA)n Simple_repeat Simple_repeat 1 148 0 574 153 62 49 chr4 32720492 32720636 -169607711 - L1MC2 LINE L1 -9 6335 6190 486 141 12 0 chr4 32720653 32720738 -169607609 + MLT1E1 LTR MaLR 569 654 0 482 150 70 10 chr4 32720738 32720838 -169607509 + L1M LINE L1 5295 5400 -944 2524 236 51 97 chr4 32720916 32721295 -169607052 - L1MC4 LINE L1 -1866 6176 5781 2157 129 0 0 chr4 32721295 32721605 -169606742 - AluY SINE Alu 0 311 2 2524 236 51 97 chr4 32721605 32722150 -169606197 - L1MC4 LINE L1 -2261 5781 5295 1291 264 30 9 chr4 32722150 32722304 -169606043 - MLT1E1 LTR MaLR 0 654 505 1711 166 35 52 chr4 32722304 32722672 -169605675 + THE1B LTR MaLR 1 362 -2 1291 264 30 9 chr4 32722672 32722846 -169605501 - MLT1E1 LTR MaLR -149 505 319 615 263 134 0 chr4 32722864 32723043 -169605304 - MLT1E1 LTR MaLR -399 255 53 1334 190 28 28 chr4 32723242 32723526 -169604821 - LTR32 LTR ERVL -7 464 181 1548 174 48 60 chr4 32723747 32724144 -169604203 + MSTD LTR MaLR 3 394 -2 475 322 133 23 chr4 32724414 32724759 -169603588 + L2 LINE L2 2523 2905 -409 25 75 0 0 chr4 32725779 32725832 -169602515 + AT_rich Low_complexity Low_complexity 1 53 0 2025 212 119 0 chr4 32725845 32726283 -169602064 + MLT1D LTR MaLR 8 497 -8 2086 111 0 7 chr4 32726367 32726655 -169601692 + AluSx SINE Alu 1 286 -26 336 24 0 0 chr4 32726657 32726698 -169601649 + (CA)n Simple_repeat Simple_repeat 1 41 0 2110 99 0 3 chr4 32727746 32728052 -169600295 - AluSx SINE Alu 0 305 1 3608 151 140 8 chr4 32728348 32729078 -169599269 - LTR1B LTR ERV1 0 826 1 367 302 7 40 chr4 32729204 32729353 -169598994 - L1MC4 LINE L1 -1007 5139 4996 2033 128 0 39 chr4 32729842 32730154 -169598193 - AluSx SINE Alu -4 308 9 368 250 43 90 chr4 32730521 32730599 -169597748 - MLT1J LTR MaLR -332 179 99 2428 77 0 0 chr4 32730599 32730910 -169597437 - AluY SINE Alu 0 311 1 368 250 43 90 chr4 32730910 32731019 -169597328 - MLT1J LTR MaLR -412 99 1 21 0 0 0 chr4 32731031 32731052 -169597295 + AT_rich Low_complexity Low_complexity 1 21 0 249 348 106 29 chr4 32731684 32731891 -169596456 + LTR67 LTR ERVL 153 375 -182 247 293 0 0 chr4 32732005 32732063 -169596284 + MER94 DNA DNA 77 134 0 1133 229 8 22 chr4 32732706 32732973 -169595374 + AluJo SINE Alu 6 268 -44 2227 98 20 0 chr4 32733666 32733963 -169594384 - AluSp SINE Alu -10 303 1 190 341 49 67 chr4 32734327 32734491 -169593856 + L2 LINE L2 2810 2970 -344 1451 174 55 26 chr4 32734902 32735213 -169593134 - THE1C LTR MaLR 0 375 56 763 234 206 8 chr4 32735802 32736200 -169592147 - MER69 DNA AcHobo -40 2486 2010 * 1157 309 121 14 chr4 32736192 32736696 -169591651 - MER69 DNA AcHobo -652 574 17 1877 117 26 4 chr4 32737924 32738228 -169590119 - AluSg SINE Alu 0 320 11 23 0 0 0 chr4 32738271 32738294 -169590053 + AT_rich Low_complexity Low_complexity 1 23 0 3237 257 51 38 chr4 32738753 32740492 -169587855 + L1M4b LINE L1 29 2024 -4831 863 255 23 0 chr4 32740513 32740776 -169587571 + L1M4b LINE L1 3080 3348 -3609 2307 105 0 9 chr4 32740778 32741093 -169587254 + AluSx SINE Alu 1 312 0 3903 202 46 1 chr4 32741112 32741958 -169586389 - L1MC2 LINE L1 -11 6333 5450 225 94 0 0 chr4 32742538 32742570 -169585777 + (TA)n Simple_repeat Simple_repeat 1 32 0 293 282 8 8 chr4 32743126 32743243 -169585104 + (TA)n Simple_repeat Simple_repeat 1 117 0 24 32 0 0 chr4 32743457 32743488 -169584859 + AT_rich Low_complexity Low_complexity 1 31 0 339 245 10 31 chr4 32743632 32743730 -169584617 - MIR SINE MIR -119 143 48 838 72 0 0 chr4 32745123 32745234 -169583113 + L1PA6 LINE L1 6044 6154 0 312 258 0 0 chr4 32745358 32745455 -169582892 + (TA)n Simple_repeat Simple_repeat 1 97 0 1410 241 22 22 chr4 32745477 32745842 -169582505 - MLT1A1 LTR MaLR 0 365 1 273 240 66 41 chr4 32747151 32747272 -169581075 + L2 LINE L2 3181 3304 -9 23 0 0 0 chr4 32747861 32747884 -169580463 + AT_rich Low_complexity Low_complexity 1 23 0 675 330 88 4 chr4 32748264 32748537 -169579810 - LTR16A LTR ERVL 0 450 155 1325 211 176 24 chr4 32748926 32749376 -169578971 + MLT2B1 LTR ERVL 1 518 -2 8772 209 29 31 chr4 32749379 32751229 -169577118 + ERVL-B1-B1 LTR ERVL 2 1848 -3916 6990 120 3 7 chr4 32751229 32752238 -169576109 + THE1B-int LTR MaLR 576 1580 0 2193 131 19 25 chr4 32752238 32752604 -169575743 + THE1B LTR MaLR 1 364 0 2837 191 55 28 chr4 32752606 32753215 -169575132 - L1 LINE L1 -813 5333 4699 248 68 0 23 chr4 32753215 32753259 -169575088 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 2837 191 55 28 chr4 32753259 32753397 -169574950 - L1 LINE L1 -1447 4699 4566 521 209 9 0 chr4 32753401 32753516 -169574831 - L1 LINE L1 -1896 4250 4135 3793 200 20 0 chr4 32753538 32754328 -169574019 + L1PA15-16 LINE L1 1980 2785 -4064 12013 202 13 10 chr4 32754328 32756575 -169571772 + ERVL-B1-B1 LTR ERVL 2709 4962 -802 1061 191 0 0 chr4 32756617 32756795 -169571552 - ERVL LTR ERVL -607 5157 4980 * 2079 174 23 79 chr4 32756794 32757323 -169571024 + ERVL-B1-B1 LTR ERVL 5257 5755 -9 2039 206 48 48 chr4 32757325 32757845 -169570502 + MLT2B1 LTR ERVL 1 520 0 290 329 67 12 chr4 32758637 32758801 -169569546 + MLT1J2 LTR MaLR 64 236 -214 909 288 115 59 chr4 32758894 32759917 -169568430 - HAL1 LINE L1 -803 1704 624 197 279 66 118 chr4 32760512 32760648 -169567699 + L2 LINE L2 3144 3272 0 21 0 0 0 chr4 32760955 32760976 -169567371 + AT_rich Low_complexity Low_complexity 1 21 0 506 242 137 84 chr4 32761063 32761315 -169567032 + MIR SINE MIR 17 262 0 605 271 8 0 chr4 32761458 32761591 -169566756 - FLAM_A SINE Alu -8 134 1 318 264 112 8 chr4 32762900 32763025 -169565322 + MIR SINE MIR 96 233 -29 7843 95 4 3 chr4 32763906 32765819 -169562528 + L1PA7 LINE L1 4226 6154 0 362 311 42 8 chr4 32766039 32766158 -169562189 - MIR SINE MIR -120 142 20 26 30 0 0 chr4 32767378 32767411 -169560936 + AT_rich Low_complexity Low_complexity 1 33 0 1537 192 13 19 chr4 32767448 32767756 -169560591 - AluJo SINE Alu -2 310 5 1180 210 48 20 chr4 32768724 32768972 -169559375 + AluJb SINE Alu 39 293 -19 835 304 159 20 chr4 32769001 32769060 -169559287 - L1 LINE L1 -2833 3313 3264 2047 122 3 0 chr4 32769060 32769372 -169558975 - AluSq SINE Alu 0 313 1 835 304 159 20 chr4 32769372 32770078 -169558269 - L1 LINE L1 -2882 3264 2455 256 291 87 0 chr4 32770628 32770731 -169557616 - MIR SINE MIR -5 257 146 234 360 52 52 chr4 32772570 32772781 -169555566 + MIR SINE MIR 2 212 -50 584 200 30 122 chr4 32773228 32773523 -169554824 + L1M4 LINE L1 3863 4130 -2016 306 289 0 0 chr4 32773645 32773728 -169554619 + L1MEc LINE L1 1388 1470 -4926 1479 291 100 28 chr4 32774002 32775381 -169552966 + L1MEc LINE L1 2262 3779 -2436 2107 123 40 37 chr4 32775381 32775755 -169552592 - THE1C LTR MaLR 0 375 1 1479 291 100 28 chr4 32775755 32776018 -169552329 + L1MEc LINE L1 3779 4022 -2193 398 291 35 21 chr4 32776283 32776424 -169551923 + L2 LINE L2 2928 3070 -243 1911 128 3 3 chr4 32776871 32777203 -169551144 - AluSx SINE Alu 0 332 1 21 89 0 0 chr4 32777203 32777259 -169551088 + AT_rich Low_complexity Low_complexity 1 56 0 198 264 0 0 chr4 32777814 32777867 -169550480 - L2 LINE L2 0 3313 3261 568 266 36 99 chr4 32777955 32778075 -169550272 + L3 LINE CR1 976 1073 -504 1466 168 7 35 chr4 32778075 32778361 -169549986 - AluJb SINE Alu -33 279 2 568 266 36 99 chr4 32778361 32778492 -169549855 + L3 LINE CR1 1073 1211 -366 186 43 0 0 chr4 32778498 32778521 -169549826 + (TAAAAA)n Simple_repeat Simple_repeat 1 23 0 288 263 35 18 chr4 32778932 32779046 -169549301 + L1MEc LINE L1 2994 3109 -3106 14680 180 181 76 chr4 32779103 32783636 -169544711 + L1P LINE L1 6 5011 -1135 420 314 80 43 chr4 32783878 32784325 -169544022 + L1MEc LINE L1 3614 4077 -2138 256 329 19 17 chr4 32784364 32784542 -169543805 + L1MEc LINE L1 4150 4328 -1887 432 0 0 0 chr4 32784737 32784785 -169543562 + (TG)n Simple_repeat Simple_repeat 2 49 0 1616 205 57 32 chr4 32784801 32785205 -169543142 - LTR52 LTR ERVL -7 414 1 977 272 28 35 chr4 32785205 32785492 -169542855 - LTR52-int LTR ERVL 0 3556 3272 902 229 27 8 chr4 32785476 32785738 -169542609 - LTR52-int LTR ERVL -3255 301 3 * 1489 205 57 27 chr4 32785740 32786145 -169542202 - LTR52 LTR ERVL -3 418 2 472 65 26 0 chr4 32786145 32786222 -169542125 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 33 0 0 0 chr4 32786978 32787011 -169541336 + AT_rich Low_complexity Low_complexity 1 33 0 285 340 42 47 chr4 32788109 32788321 -169540026 + L2 LINE L2 1536 1746 -1568 535 176 37 7 chr4 32788408 32788544 -169539803 + L1MD3 LINE L1 7856 7995 0 355 355 57 32 chr4 32788547 32788826 -169539521 + MLT1I LTR MaLR 124 409 0 803 284 46 63 chr4 32790181 32790453 -169537894 + MLT1I LTR MaLR 66 332 -77 2420 59 0 3 chr4 32790453 32790759 -169537588 - AluY SINE Alu -6 305 1 803 284 46 63 chr4 32790759 32790834 -169537513 + MLT1I LTR MaLR 332 407 -2 753 384 103 21 chr4 32790874 32791979 -169536368 + L2 LINE L2 1782 2977 -337 26 0 0 0 chr4 32793186 32793212 -169535135 + AT_rich Low_complexity Low_complexity 1 26 0 237 196 43 0 chr4 32794223 32794269 -169534078 - MER2 DNA MER2_type 0 345 298 213 39 0 0 chr4 32794310 32794336 -169534011 + (GA)n Simple_repeat Simple_repeat 2 27 0 206 213 43 0 chr4 32794340 32794387 -169533960 + GA-rich Low_complexity Low_complexity 4 52 0 1200 225 33 4 chr4 32794389 32794665 -169533682 - MLT2D LTR ERVL -48 366 83 280 302 94 20 chr4 32794692 32794841 -169533506 + L3 LINE CR1 1139 1298 -279 * 367 300 54 23 chr4 32794833 32794963 -169533384 - L2 LINE L2 0 3313 3180 255 61 0 0 chr4 32795221 32795254 -169533093 + (TCCA)n Simple_repeat Simple_repeat 3 35 0 884 285 105 67 chr4 32795923 32796771 -169531576 - L1ME3A LINE L1 -8 6162 5283 1846 302 102 13 chr4 32797098 32798487 -169529860 - L1ME3A LINE L1 -2499 3647 2135 254 286 87 16 chr4 32798986 32799112 -169529235 - L1M2 LINE L1 -4330 2519 2385 21 0 0 0 chr4 32799140 32799161 -169529186 + AT_rich Low_complexity Low_complexity 1 21 0 414 290 97 0 chr4 32799320 32799465 -169528882 - MIR SINE MIR -27 235 77 284 311 80 33 chr4 32799629 32799780 -169528567 + MIR3 SINE MIR 40 197 -11 219 387 11 0 chr4 32799929 32800022 -169528325 - L3 LINE CR1 -410 1167 1074 26 50 0 0 chr4 32800365 32800405 -169527942 + AT_rich Low_complexity Low_complexity 1 40 0 28 0 0 0 chr4 32800876 32800904 -169527443 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 32801645 32801671 -169526676 + AT_rich Low_complexity Low_complexity 1 26 0 1670 184 7 3 chr4 32801679 32801972 -169526375 - AluSx SINE Alu -18 294 1 25 51 0 0 chr4 32802279 32802318 -169526029 + AT_rich Low_complexity Low_complexity 1 39 0 1617 292 13 18 chr4 32802407 32802962 -169525385 + L1M3c LINE L1 1 596 -5545 1423 226 117 52 chr4 32802989 32803432 -169524915 + L1M3c LINE L1 669 1140 -5001 379 297 94 67 chr4 32803631 32804327 -169524020 + L1ME LINE L1 3878 4594 -1552 509 267 0 0 chr4 32804605 32804736 -169523611 - L1PB4 LINE L1 -2 6154 6024 373 281 40 85 chr4 32804800 32805156 -169523191 + MLT1J1 LTR MaLR 68 425 -4 290 47 47 0 chr4 32805457 32805500 -169522847 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 21 0 0 0 chr4 32807175 32807196 -169521151 + AT_rich Low_complexity Low_complexity 1 21 0 434 336 9 0 chr4 32807782 32807892 -169520455 + MER81 DNA DNA 2 112 -2 261 315 7 56 chr4 32808141 32808284 -169520063 + MIR SINE MIR 66 201 -61 386 310 90 33 chr4 32809171 32809416 -169518931 + MLT1L LTR MaLR 306 564 -51 273 260 27 27 chr4 32809514 32809587 -169518760 - L2 LINE L2 -560 2754 2682 276 321 94 47 chr4 32810153 32810365 -169517982 + MIR SINE MIR 24 245 -17 24 32 0 0 chr4 32812203 32812234 -169516113 + AT_rich Low_complexity Low_complexity 1 31 0 410 336 136 8 chr4 32813657 32813922 -169514425 + L2 LINE L2 2397 2695 -619 976 273 70 47 chr4 32814132 32814664 -169513683 + L1ME LINE L1 5240 5804 -366 892 208 12 0 chr4 32814666 32814834 -169513513 - Tigger5 DNA MER2_type 0 2323 2154 193 347 41 10 chr4 32815002 32815100 -169513247 + L2 LINE L2 2954 3054 -259 320 335 62 39 chr4 32815179 32815358 -169512989 + L2 LINE L2 2790 2972 -342 270 253 40 0 chr4 32815444 32815543 -169512804 + (TA)n Simple_repeat Simple_repeat 2 104 0 291 284 106 79 chr4 32816983 32817237 -169511110 - L2 LINE L2 -20 3293 3033 661 230 158 49 chr4 32817934 32817975 -169510372 - MLT2C2 LTR ERVL 0 464 429 680 10 41 0 chr4 32817975 32818072 -169510275 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 661 230 158 49 chr4 32818072 32818334 -169510013 - MLT2C2 LTR ERVL -35 429 128 28 29 0 0 chr4 32818556 32818591 -169509756 + AT_rich Low_complexity Low_complexity 1 35 0 2545 124 3 3 chr4 32818708 32819072 -169509275 + THE1B LTR MaLR 1 364 0 31 0 0 0 chr4 32820843 32820874 -169507473 + AT_rich Low_complexity Low_complexity 1 31 0 310 274 72 67 chr4 32821259 32821482 -169506865 + L1MC4 LINE L1 7684 7907 -135 432 261 118 19 chr4 32823404 32823565 -169504782 - MER5B DNA MER1_type 0 178 2 787 226 100 30 chr4 32826444 32826714 -169501633 - MLT1C LTR MaLR -2 465 177 458 260 98 59 chr4 32826914 32827118 -169501229 - MLT1I LTR MaLR -197 212 1 234 0 0 0 chr4 32827856 32827882 -169500465 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2456 191 29 22 chr4 32828245 32828791 -169499556 - MER89 LTR ERV1 0 559 10 232 426 34 7 chr4 32829032 32829180 -169499167 + MIR SINE MIR 29 180 -82 5113 155 37 27 chr4 32829552 32829675 -169498672 - L1MA7 LINE L1 -4 6287 6167 354 23 0 0 chr4 32829675 32829718 -169498629 + (TG)n Simple_repeat Simple_repeat 2 44 0 5113 155 37 27 chr4 32829718 32830701 -169497646 - L1MA7 LINE L1 -124 6167 5171 369 313 9 27 chr4 32831458 32831570 -169496777 - L2 LINE L2 0 3272 3163 21 36 0 0 chr4 32832758 32832786 -169495561 + AT_rich Low_complexity Low_complexity 1 28 0 8918 184 13 28 chr4 32832806 32833358 -169494989 - L1MA6 LINE L1 -2 6289 5730 2163 132 41 16 chr4 32833358 32833722 -169494625 - THE1C LTR MaLR 0 375 3 9278 133 34 21 chr4 32833724 32835284 -169493063 - THE1C-int LTR MaLR 0 1580 1 2468 110 5 21 chr4 32835284 32835665 -169492682 - THE1C LTR MaLR 0 375 1 8918 184 13 28 chr4 32835665 32837942 -169490405 - L1MA6 LINE L1 -560 5731 3512 374 0 22 0 chr4 32838208 32838254 -169490093 + (CA)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr4 32839701 32839722 -169488625 + AT_rich Low_complexity Low_complexity 1 21 0 446 334 121 57 chr4 32839767 32841061 -169487286 + L2 LINE L2 1894 3266 -6 2317 124 63 0 chr4 32841135 32841514 -169486833 - MER57A LTR ERV1 0 403 1 1760 95 4 0 chr4 32842096 32842328 -169486019 + AluSg SINE Alu 1 233 -77 1306 201 103 34 chr4 32842373 32842810 -169485537 - MLT1C LTR MaLR 0 467 1 2031 288 122 55 chr4 32843029 32844514 -169483833 + L2 LINE L2 1721 3313 0 36 23 0 0 chr4 32846117 32846160 -169482187 + AT_rich Low_complexity Low_complexity 1 43 0 1638 165 76 9 chr4 32847024 32847340 -169481007 - MER1B DNA MER1_type 0 337 1 2573 101 3 6 chr4 32848313 32848669 -169479678 - THE1A LTR MaLR 0 355 1 11072 103 9 4 chr4 32848669 32850241 -169478106 - THE1A-int LTR MaLR 0 1580 1 2044 102 0 1 chr4 32850241 32850553 -169477794 - THE1A LTR MaLR 0 355 1 764 213 76 152 chr4 32851194 32851589 -169476758 + MLT1A1 LTR MaLR 1 365 0 502 335 76 56 chr4 32851804 32852603 -169475744 + L1M4 LINE L1 4520 5334 -812 24 53 0 0 chr4 32852665 32852703 -169475644 + AT_rich Low_complexity Low_complexity 1 38 0 27 29 0 0 chr4 32852730 32852764 -169475583 + AT_rich Low_complexity Low_complexity 1 34 0 213 397 77 0 chr4 32853538 32853616 -169474731 - MIR SINE MIR -96 112 29 1303 204 15 88 chr4 32853627 32853970 -169474377 - MLT1A1 LTR MaLR 0 365 48 184 143 0 32 chr4 32855027 32855090 -169473257 + (TATAA)n Simple_repeat Simple_repeat 4 64 0 254 265 97 105 chr4 32855098 32855336 -169473011 - MIR SINE MIR -14 248 13 279 0 0 0 chr4 32855400 32855431 -169472916 + (A)n Simple_repeat Simple_repeat 1 31 0 335 336 60 0 chr4 32856029 32856145 -169472202 - MIR SINE MIR -6 256 134 220 353 47 24 chr4 32856554 32856639 -169471708 + MIR SINE MIR 17 103 -105 22 0 0 0 chr4 32857120 32857142 -169471205 + AT_rich Low_complexity Low_complexity 1 22 0 432 233 74 95 chr4 32857234 32857423 -169470924 - MIR SINE MIR -6 256 72 322 321 138 62 chr4 32858236 32858541 -169469806 - L1ME LINE L1 -5484 586 259 267 322 7 20 chr4 32858719 32858871 -169469476 - L1MEc LINE L1 -5025 1371 1222 1130 202 7 3 chr4 32858994 32859265 -169469082 + MER7A DNA MER2_type 3 343 -3 291 28 0 0 chr4 32859312 32859348 -169468999 + (TTG)n Simple_repeat Simple_repeat 1 36 0 261 271 0 21 chr4 32859752 32859848 -169468499 + (CATA)n Simple_repeat Simple_repeat 3 96 0 207 0 0 0 chr4 32860524 32860547 -169467800 + (A)n Simple_repeat Simple_repeat 1 23 0 679 325 65 47 chr4 32861780 32862121 -169466226 - L2 LINE L2 -1 3312 2966 1980 102 0 0 chr4 32863178 32863453 -169464894 + AluSc SINE Alu 3 277 -32 182 62 31 0 chr4 32863453 32863485 -169464862 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 29 60 0 0 chr4 32863662 32863712 -169464635 + AT_rich Low_complexity Low_complexity 1 50 0 590 304 72 5 chr4 32864442 32864649 -169463698 - MIR SINE MIR -13 249 29 28 0 0 0 chr4 32864658 32864686 -169463661 + AT_rich Low_complexity Low_complexity 1 28 0 212 333 85 35 chr4 32865472 32865613 -169462734 - MIR SINE MIR -112 150 3 418 284 52 32 chr4 32865828 32865983 -169462364 + L1MEc LINE L1 20 177 -6219 548 242 0 0 chr4 32865992 32866120 -169462227 - MLT1D LTR MaLR 0 505 378 311 281 74 15 chr4 32866196 32866331 -169462016 + L1MEc LINE L1 1948 2090 -4306 4768 104 20 6 chr4 32866377 32867091 -169461256 - L1PA13 LINE L1 0 6163 5440 265 143 20 0 chr4 32867091 32867140 -169461207 - L1PA13 LINE L1 -1935 4211 4162 1835 257 65 7 chr4 32867140 32867836 -169460511 + L1M4 LINE L1 4374 5109 -1037 313 133 0 0 chr4 32868131 32868176 -169460171 + MLT1I LTR MaLR 362 406 -3 326 234 45 63 chr4 32868244 32868355 -169459992 + L1ME3A LINE L1 6038 6146 -24 270 264 45 0 chr4 32868365 32868475 -169459872 + (TA)n Simple_repeat Simple_repeat 1 115 0 1307 144 66 16 chr4 32869691 32869934 -169458413 - MSTA LTR MaLR 0 428 174 2043 123 3 3 chr4 32870034 32870343 -169458004 + MSTA-int LTR MaLR 1338 1646 -5 1743 158 110 18 chr4 32870348 32870740 -169457607 + MSTA LTR MaLR 1 428 0 2181 114 0 0 chr4 32870833 32871139 -169457208 + AluSg SINE Alu 1 306 -4 406 335 71 0 chr4 32871576 32871746 -169456601 - MER5A DNA MER1_type 0 189 8 214 302 85 28 chr4 32872106 32872212 -169456135 + MIR SINE MIR 2 113 -149 2331 132 0 6 chr4 32872724 32873088 -169455259 + THE1B LTR MaLR 1 362 -2 272 277 85 0 chr4 32874073 32874167 -169454180 - MIR SINE MIR -112 150 49 200 217 22 0 chr4 32874165 32874211 -169454136 - L2 LINE L2 -3 3310 3264 * 24 32 0 0 chr4 32874934 32874965 -169453382 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 32875597 32875620 -169452727 + AT_rich Low_complexity Low_complexity 1 23 0 201 288 153 27 chr4 32875627 32875738 -169452609 - L2 LINE L2 0 3313 3189 688 176 21 21 chr4 32875801 32875943 -169452404 + MSTD LTR MaLR 253 394 -2 241 331 66 22 chr4 32875944 32876080 -169452267 - L2 LINE L2 -221 3051 2910 182 275 0 75 chr4 32876220 32876300 -169452047 + MIR SINE MIR 189 262 0 405 0 0 0 chr4 32877243 32877288 -169451059 + (TA)n Simple_repeat Simple_repeat 1 45 0 23 33 0 0 chr4 32877406 32877436 -169450911 + AT_rich Low_complexity Low_complexity 1 30 0 313 329 181 0 chr4 32877451 32877600 -169450747 - MIR SINE MIR -13 249 74 1681 195 3 0 chr4 32878017 32878314 -169450033 + AluJb SINE Alu 1 298 -14 234 0 0 0 chr4 32878314 32878340 -169450007 + (TA)n Simple_repeat Simple_repeat 2 27 0 670 234 43 22 chr4 32878613 32878797 -169449550 - MER5A DNA MER1_type -1 188 1 21 0 0 0 chr4 32880047 32880068 -169448279 + AT_rich Low_complexity Low_complexity 1 21 0 447 324 89 0 chr4 32881803 32881982 -169446365 + MLT1E LTR MaLR 6 200 -342 1021 275 47 55 chr4 32882046 32882450 -169445897 + MLT1E LTR MaLR 193 593 0 2117 123 46 0 chr4 32882456 32882780 -169445567 + L1P3 LINE L1 8 346 -6115 6780 66 11 0 chr4 32882910 32884455 -169443892 - L1PA7 LINE L1 -1 6153 4597 194 310 0 17 chr4 32887094 32887152 -169441195 - MER5A DNA MER1_type -13 176 120 183 300 191 18 chr4 32887104 32887214 -169441133 + MER5A DNA MER1_type 35 163 -26 * 183 184 0 0 chr4 32888377 32888415 -169439932 + (ATG)n Simple_repeat Simple_repeat 1 38 0 588 273 21 62 chr4 32888892 32889086 -169439261 + MIR SINE MIR 42 227 -35 249 324 0 0 chr4 32889496 32889564 -169438783 - L2 LINE L2 -4 3309 3242 2038 141 3 0 chr4 32890110 32890415 -169437932 + AluSx SINE Alu 1 306 -6 628 198 16 0 chr4 32890918 32891044 -169437303 - Charlie1a DNA MER1_type -5 1450 1323 2852 196 21 7 chr4 32891044 32891661 -169436686 + L1PB4 LINE L1 4681 5306 -840 2082 193 237 97 chr4 32891679 32892545 -169435802 + LTR28 LTR ERV1 30 1016 -4 382 205 0 0 chr4 32892548 32892631 -169435716 + L1MC4a LINE L1 5302 5384 -907 1927 156 59 8 chr4 32892675 32893033 -169435314 + L1PB4 LINE L1 5776 6151 -5 82 62 0 0 chr4 32893037 32893182 -169435165 + AT_rich Low_complexity Low_complexity 1 145 0 2108 115 10 0 chr4 32894251 32894547 -169433800 + AluSg SINE Alu 1 299 -11 2216 115 0 10 chr4 32895186 32895498 -169432849 + AluSq SINE Alu 1 309 -4 348 292 196 33 chr4 32895500 32895832 -169432515 + L1MC4a LINE L1 5574 5959 -1849 610 126 34 17 chr4 32896571 32896690 -169431657 + FLAM_C SINE Alu 23 143 0 891 214 50 11 chr4 32896892 32897074 -169431273 - MSTA LTR MaLR -9 419 231 1555 227 5 52 chr4 32897193 32897243 -169431104 - MLT1A1 LTR MaLR 0 365 314 1983 155 0 0 chr4 32897243 32897547 -169430800 - AluSx SINE Alu -7 305 2 1555 227 5 52 chr4 32897547 32897879 -169430468 - MLT1A1 LTR MaLR -51 314 1 4102 222 57 30 chr4 32897905 32898343 -169430004 - Charlie1a DNA MER1_type -1580 1181 756 2256 114 0 0 chr4 32898343 32898651 -169429696 + AluSq SINE Alu 3 310 -3 4102 222 57 30 chr4 32898651 32899361 -169428986 - Charlie1a DNA MER1_type -2005 756 3 1992 119 37 0 chr4 32899709 32900003 -169428344 + AluSx SINE Alu 1 305 -7 1237 300 58 39 chr4 32900439 32901058 -169427289 - L2 LINE L2 -5 3308 2684 2234 228 30 4 chr4 32901549 32902013 -169426334 + MER70B LTR ERVL 1 476 -102 22 35 0 0 chr4 32902659 32902688 -169425659 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 32902739 32902760 -169425587 + AT_rich Low_complexity Low_complexity 1 21 0 2050 112 53 0 chr4 32904543 32904828 -169423519 - AluSp SINE Alu -13 300 1 266 315 39 47 chr4 32904928 32905055 -169423292 - L2 LINE L2 -18 3295 3170 313 146 0 0 chr4 32905325 32905373 -169422974 + MLT1C LTR MaLR 417 464 -3 237 336 186 0 chr4 32905622 32905762 -169422585 + L2 LINE L2 3107 3272 0 212 204 23 0 chr4 32906008 32906052 -169422295 + CT-rich Low_complexity Low_complexity 3 47 0 249 377 18 0 chr4 32906055 32906169 -169422178 - L2 LINE L2 -18 3254 3139 27 0 0 0 chr4 32906354 32906381 -169421966 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr4 32906494 32906521 -169421826 + AT_rich Low_complexity Low_complexity 1 27 0 3024 81 0 0 chr4 32906536 32906974 -169421373 + L1PA4 LINE L1 5729 6166 0 2681 93 3 6 chr4 32907308 32907673 -169420674 + THE1B LTR MaLR 1 364 0 30 89 0 0 chr4 32907823 32907902 -169420445 + AT_rich Low_complexity Low_complexity 1 79 0 692 298 57 4 chr4 32907912 32908157 -169420190 - L1MA9 LINE L1 -37 6275 6018 1139 288 121 41 chr4 32908455 32909133 -169419214 + L2 LINE L2 1981 2712 -602 369 220 165 9 chr4 32909137 32909246 -169419101 - MIR SINE MIR -51 211 86 206 302 46 83 chr4 32909300 32909553 -169418794 + L2 LINE L2 2722 3031 -282 21 0 0 0 chr4 32911574 32911595 -169416752 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr4 32912371 32912408 -169415939 + AT_rich Low_complexity Low_complexity 1 37 0 238 235 0 0 chr4 32912490 32912541 -169415806 - L2 LINE L2 0 3313 3263 631 316 44 5 chr4 32912696 32912902 -169415445 + MIR SINE MIR 49 262 0 281 349 80 17 chr4 32913739 32913914 -169414433 - MIR SINE MIR -2 260 75 626 267 39 17 chr4 32915473 32915653 -169412694 - MLT1C LTR MaLR -84 383 200 204 40 0 0 chr4 32915677 32915702 -169412645 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2256 76 7 0 chr4 32916387 32916664 -169411683 - AluY SINE Alu -18 293 15 1301 153 27 0 chr4 32916672 32916894 -169411453 - L1MA4A LINE L1 -27 6276 6049 386 98 98 0 chr4 32916907 32916968 -169411379 - MLT1C LTR MaLR -292 175 109 2151 303 149 10 chr4 32916978 32918045 -169410302 - L2 LINE L2 -313 3000 1789 21 36 0 0 chr4 32919172 32919200 -169409147 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 32921077 32921101 -169407246 + AT_rich Low_complexity Low_complexity 1 24 0 267 263 25 25 chr4 32921264 32921382 -169406965 + L1ME4a LINE L1 5768 5885 -236 235 206 55 14 chr4 32921418 32921491 -169406856 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 4679 116 17 54 chr4 32921554 32921858 -169406489 + MER4E LTR ERV1 1 315 -464 2241 111 0 13 chr4 32921858 32922173 -169406174 + AluSx SINE Alu 1 311 -1 4679 116 17 54 chr4 32922173 32922677 -169405670 + MER4E LTR ERV1 315 779 0 2330 145 81 34 chr4 32922832 32923300 -169405047 - LTR2B LTR ERV1 0 490 1 337 269 79 71 chr4 32923513 32923856 -169404491 - MLT1I LTR MaLR -2 407 70 240 351 58 32 chr4 32924162 32924316 -169404031 - MIR SINE MIR -56 206 49 313 224 22 37 chr4 32924855 32924989 -169403358 + L1ME4a LINE L1 5990 6121 0 234 262 16 16 chr4 32925663 32925724 -169402623 - MER58 DNA MER1_type -129 86 26 742 300 57 24 chr4 32925742 32925989 -169402358 - MIR SINE MIR -5 257 3 1597 255 50 2 chr4 32926068 32926472 -169401875 - MLT1E2 LTR MaLR -4 622 200 2291 165 34 77 chr4 32926482 32926960 -169401387 + LTR32 LTR ERVL 15 471 0 534 142 172 58 chr4 32926990 32927164 -169401183 - MLT1E3 LTR MaLR -442 184 5 290 289 195 13 chr4 32927829 32927978 -169400369 + L2 LINE L2 2916 3091 -181 1103 276 76 11 chr4 32928114 32928484 -169399863 - MLT1I LTR MaLR -8 401 8 474 202 0 0 chr4 32928515 32928604 -169399743 + MLT1A1 LTR MaLR 1 89 -285 600 236 6 45 chr4 32928823 32928980 -169399367 + MLT1B LTR MaLR 1 151 -239 1164 341 57 24 chr4 32928994 32930017 -169398330 - L1MEc LINE L1 -5306 1090 35 39 22 0 0 chr4 32930309 32930355 -169397992 + AT_rich Low_complexity Low_complexity 1 46 0 5476 171 43 13 chr4 32930857 32932044 -169396303 + L1MC1 LINE L1 5107 6333 0 300 115 0 66 chr4 32932035 32932096 -169396251 + L1MB2 LINE L1 6111 6167 -4 * 32 0 0 0 chr4 32932096 32932128 -169396219 + AT_rich Low_complexity Low_complexity 1 32 0 180 77 0 0 chr4 32932343 32932369 -169395978 + (T)n Simple_repeat Simple_repeat 1 26 0 195 217 0 0 chr4 32932823 32932883 -169395464 + (TG)n Simple_repeat Simple_repeat 2 61 0 1179 196 43 40 chr4 32933747 32934022 -169394325 + MLT1A1 LTR MaLR 56 331 -34 717 245 6 12 chr4 32934022 32934185 -169394162 + MER70A LTR ERVL 1 162 -310 * 2115 219 39 49 chr4 32934181 32934675 -169393672 + MER70B LTR ERVL 90 578 0 235 158 0 0 chr4 32934677 32934715 -169393632 + MLT1A1 LTR MaLR 327 364 -1 797 181 24 0 chr4 32934716 32934843 -169393504 - MER20 DNA MER1_type -88 131 2 1125 286 28 55 chr4 32935224 32935336 -169393011 - LTR16C LTR ERVL -4 487 373 2089 135 48 25 chr4 32935336 32935692 -169392655 + THE1B LTR MaLR 1 364 0 10332 176 1 0 chr4 32935692 32937270 -169391077 + THE1B-int LTR MaLR 1 1580 0 2029 136 57 28 chr4 32937270 32937624 -169390723 + THE1B LTR MaLR 1 364 0 1125 286 28 55 chr4 32937624 32937908 -169390439 - LTR16C LTR ERVL -115 376 100 439 260 182 17 chr4 32938275 32938456 -169389891 - MIR SINE MIR -50 212 2 25 0 0 0 chr4 32938737 32938762 -169389585 + AT_rich Low_complexity Low_complexity 1 25 0 307 349 98 23 chr4 32939745 32939960 -169388387 - MIR SINE MIR -4 258 28 623 186 47 16 chr4 32940523 32940652 -169387695 + FLAM_C SINE Alu 1 133 0 4467 105 76 26 chr4 32940691 32941705 -169386642 - MER11A LTR ERVK -1 1265 1 1992 172 90 10 chr4 32941705 32942095 -169386252 + MSTA LTR MaLR 8 428 0 233 121 0 0 chr4 32942095 32942128 -169386219 + AluJb SINE Alu 165 197 -105 493 193 174 0 chr4 32942132 32942241 -169386106 + AluJb SINE Alu 176 303 -9 2179 114 7 0 chr4 32942486 32942784 -169385563 + AluSx SINE Alu 1 300 -12 2793 165 72 42 chr4 32942898 32943492 -169384855 - LTR9 LTR ERV1 0 612 1 311 332 79 55 chr4 32943654 32944109 -169384238 + LTR67 LTR ERVL 91 556 -1 399 305 10 90 chr4 32944240 32944440 -169383907 - MIR3 SINE MIR -6 202 19 224 312 127 40 chr4 32944915 32945088 -169383259 + MIR SINE MIR 65 252 -10 199 371 98 21 chr4 32945830 32945973 -169382374 - L3b LINE CR1 -93 1490 1337 766 218 59 0 chr4 32946279 32946449 -169381898 - MER3 DNA MER1_type 0 209 30 3617 228 36 70 chr4 32947587 32948065 -169380282 - L1MB8 LINE L1 -51 6127 5634 2029 96 29 0 chr4 32948065 32948358 -169379989 - AluSg SINE Alu 0 301 1 3617 228 36 70 chr4 32948358 32948823 -169379524 - L1MB8 LINE L1 -544 5634 5155 1729 155 49 3 chr4 32948823 32949107 -169379240 + AluJo SINE Alu 16 312 0 3617 228 36 70 chr4 32949107 32949978 -169378369 - L1MB8 LINE L1 -1023 5155 4441 1882 125 24 10 chr4 32949978 32950273 -169378074 - AluSx SINE Alu -13 299 1 3617 228 36 70 chr4 32950273 32950830 -169377517 - L1MB8 LINE L1 -1737 4441 3867 186 43 0 0 chr4 32950931 32950954 -169377393 + (TCC)n Simple_repeat Simple_repeat 1 23 0 2702 257 98 7 chr4 32950954 32952085 -169376262 - L1MB8 LINE L1 -2529 3617 2384 188 254 0 18 chr4 32952177 32952232 -169376115 - MIR SINE MIR -150 112 59 2139 108 9 19 chr4 32952260 32952576 -169375771 + AluSq SINE Alu 1 313 0 255 310 18 35 chr4 32953433 32953569 -169374778 + FLAM_C SINE Alu 23 156 0 2473 155 29 7 chr4 32953745 32954164 -169374183 - MSTA LTR MaLR 0 428 1 361 288 146 26 chr4 32955337 32955570 -169372777 - MIR SINE MIR -1 261 1 1145 248 52 83 chr4 32955610 32955716 -169372631 - MLT1F1 LTR MaLR 0 567 459 1991 155 47 6 chr4 32955716 32956038 -169372309 - MER1B DNA MER1_type -2 335 1 1145 248 52 83 chr4 32956038 32956447 -169371900 - MLT1F1 LTR MaLR -108 459 68 199 292 12 119 chr4 32956860 32957028 -169371319 - MIR SINE MIR -7 255 106 572 256 14 70 chr4 32957903 32958118 -169370229 + MLT2B1 LTR ERVL 276 478 -42 275 156 21 21 chr4 32958126 32958222 -169370125 + (TA)n Simple_repeat Simple_repeat 1 96 0 235 88 0 0 chr4 32958231 32958265 -169370082 + MLT2B1 LTR ERVL 482 515 0 456 296 13 7 chr4 32958272 32958424 -169369923 - MLT1I LTR MaLR -206 203 51 227 282 13 26 chr4 32958666 32958744 -169369603 + MIR SINE MIR 183 259 -3 223 177 16 32 chr4 32958753 32958815 -169369532 + (TTA)n Simple_repeat Simple_repeat 1 61 0 436 239 54 83 chr4 32959387 32959592 -169368755 + MIR SINE MIR 48 246 -16 1422 267 85 30 chr4 32959663 32960157 -169368190 - MLT1H1 LTR MaLR 0 555 35 711 219 77 5 chr4 32960585 32960781 -169367566 - MER58C DNA MER1_type -5 210 1 493 224 61 139 chr4 32961522 32961762 -169366585 - MER69 DNA AcHobo -1399 1127 913 1781 152 82 114 chr4 32961762 32962202 -169366145 + MSTB LTR MaLR 1 426 0 493 224 61 139 chr4 32962202 32962256 -169366091 - MER69 DNA AcHobo -1613 913 856 8762 173 28 32 chr4 32962256 32964690 -169363657 - L1M1 LINE L1 -548 5755 3308 5464 206 19 68 chr4 32964699 32965230 -169363117 - L1M2 LINE L1 -3929 3279 2723 1934 163 0 7 chr4 32965230 32965525 -169362822 + AluSx SINE Alu 3 295 -17 5464 206 19 68 chr4 32965525 32966712 -169361635 - L1M2 LINE L1 -4485 2723 1652 2358 249 66 30 chr4 32966696 32967458 -169360889 - L1M2 LINE L1 -6322 887 29 * 312 260 81 52 chr4 32967482 32967653 -169360694 - MER69 DNA AcHobo -1737 789 614 279 266 116 22 chr4 32967653 32967908 -169360439 - MER34 LTR ERV1 0 726 354 310 221 48 39 chr4 32968075 32968179 -169360168 - MER34 LTR ERV1 -412 130 26 1626 262 69 19 chr4 32968207 32968772 -169359575 - MER69 DNA AcHobo -1927 599 7 32 0 0 0 chr4 32968972 32969004 -169359343 + AT_rich Low_complexity Low_complexity 1 32 0 1903 125 38 14 chr4 32969006 32969293 -169359054 + AluSc SINE Alu 1 294 -15 311 192 61 40 chr4 32970187 32970286 -169358061 - MLT1I LTR MaLR -305 104 4 342 0 0 0 chr4 32972479 32972517 -169355830 + (CAG)n Simple_repeat Simple_repeat 2 39 0 279 206 38 8 chr4 32975592 32975723 -169352624 + GA-rich Low_complexity Low_complexity 1 135 0 331 259 0 35 chr4 32977351 32977521 -169350826 + (CGG)n Simple_repeat Simple_repeat 1 164 0 22 0 0 0 chr4 32982320 32982342 -169346005 + AT_rich Low_complexity Low_complexity 1 22 0 243 88 0 0 chr4 32983635 32983669 -169344678 + (TA)n Simple_repeat Simple_repeat 1 34 0 234 0 0 0 chr4 32983668 32983694 -169344653 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 346 335 12 12 chr4 32984442 32984575 -169343772 - MIR SINE MIR -56 152 19 29 47 0 0 chr4 32985295 32985338 -169343009 + AT_rich Low_complexity Low_complexity 1 43 0 28 61 0 0 chr4 32985470 32985519 -169342828 + AT_rich Low_complexity Low_complexity 1 49 0 222 156 0 0 chr4 32986689 32986734 -169341613 + (TG)n Simple_repeat Simple_repeat 2 46 0 24 0 0 0 chr4 32986801 32986825 -169341522 + AT_rich Low_complexity Low_complexity 1 24 0 21 82 0 0 chr4 32986875 32986924 -169341423 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 32987402 32987423 -169340924 + AT_rich Low_complexity Low_complexity 1 21 0 609 236 65 41 chr4 32987860 32988106 -169340241 - MER112 DNA MER1_type -1 255 4 628 205 8 8 chr4 32988828 32988955 -169339392 - FLAM_A SINE Alu -8 134 8 2073 141 0 3 chr4 32989599 32989905 -169338442 - AluSx SINE Alu -7 305 1 395 216 10 49 chr4 32990041 32990143 -169338204 + L2 LINE L2 3174 3271 -1 26 0 0 0 chr4 32991871 32991897 -169336450 + AT_rich Low_complexity Low_complexity 1 26 0 2333 74 0 3 chr4 32991897 32992207 -169336140 - AluY SINE Alu -2 309 1 325 229 29 48 chr4 32992446 32992551 -169335796 + MIR SINE MIR 35 137 -71 22 0 0 0 chr4 32992720 32992742 -169335605 + AT_rich Low_complexity Low_complexity 1 22 0 795 201 20 0 chr4 32992743 32992892 -169335455 + FRAM SINE Alu 1 152 -14 186 43 0 0 chr4 32992908 32992931 -169335416 + (TG)n Simple_repeat Simple_repeat 2 24 0 1080 237 15 57 chr4 32993226 32993559 -169334788 - MLT1B LTR MaLR -6 384 66 21 0 0 0 chr4 32994428 32994449 -169333898 + AT_rich Low_complexity Low_complexity 1 21 0 306 65 48 0 chr4 32994483 32994545 -169333802 + (TA)n Simple_repeat Simple_repeat 2 66 0 226 303 15 0 chr4 32995037 32995103 -169333244 + (TATG)n Simple_repeat Simple_repeat 1 67 0 320 326 11 11 chr4 32995167 32995262 -169333085 - L2 LINE L2 -30 3283 3189 629 338 18 9 chr4 32995329 32995557 -169332790 - MIR SINE MIR -28 234 5 906 207 47 61 chr4 32996652 32996865 -169331482 - AluJb SINE Alu -102 210 1 201 74 0 0 chr4 32999092 32999119 -169329228 + (CA)n Simple_repeat Simple_repeat 1 27 0 274 294 25 84 chr4 32999886 33000005 -169328342 - L2 LINE L2 -107 3165 3054 508 289 55 68 chr4 33000225 33000623 -169327724 + MARNA DNA Mariner 185 577 -9 228 67 0 0 chr4 33001140 33001170 -169327177 + (TG)n Simple_repeat Simple_repeat 1 30 0 2092 104 39 0 chr4 33001221 33001500 -169326847 - AluSx SINE Alu -22 290 1 1790 212 46 38 chr4 33002686 33003185 -169325162 - MLT1D LTR MaLR -2 503 1 1360 235 57 29 chr4 33003683 33004066 -169324281 - MSTD LTR MaLR -2 394 1 184 268 99 14 chr4 33005277 33005348 -169322999 + MIR SINE MIR 116 192 -70 488 265 0 0 chr4 33005397 33005514 -169322833 + MER20 DNA MER1_type 103 219 0 378 233 26 60 chr4 33005683 33005799 -169322548 - LTR33 LTR ERVL -377 144 33 288 364 73 26 chr4 33006058 33006209 -169322138 - L2 LINE L2 0 3272 3115 1584 99 4 13 chr4 33007492 33007724 -169320623 - AluSg/x SINE Alu 0 312 83 318 106 0 0 chr4 33008158 33008205 -169320142 + (A)n Simple_repeat Simple_repeat 1 47 0 288 0 0 0 chr4 33009534 33009566 -169318781 + (TG)n Simple_repeat Simple_repeat 2 33 0 387 310 80 42 chr4 33010276 33010489 -169317858 - MIR SINE MIR -11 251 31 590 309 17 51 chr4 33010914 33011010 -169317337 - MIR SINE MIR -33 229 131 1720 185 44 95 chr4 33011010 33011174 -169317173 - MSTB2 LTR MaLR 0 457 286 2139 102 0 0 chr4 33011174 33011458 -169316889 + AluSc SINE Alu 1 284 -25 1720 185 44 95 chr4 33011458 33011775 -169316572 - MSTB2 LTR MaLR -171 286 1 590 309 17 51 chr4 33011775 33011914 -169316433 - MIR SINE MIR -131 131 2 773 316 79 50 chr4 33012701 33013233 -169315114 + L2 LINE L2 2718 3271 -1 677 282 92 71 chr4 33013256 33013721 -169314626 - L2 LINE L2 -11 3302 2828 2217 106 0 0 chr4 33014318 33014620 -169313727 - AluSx SINE Alu -10 302 1 2285 123 3 3 chr4 33015713 33016072 -169312275 + L1P LINE L1 4130 4488 -1658 1120 203 38 25 chr4 33016716 33017031 -169311316 - MER33 DNA MER1_type -1 323 5 236 302 80 62 chr4 33017126 33017351 -169310996 - MIR SINE MIR -26 236 8 21 0 0 0 chr4 33017427 33017448 -169310899 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 33017664 33017685 -169310662 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 33018313 33018335 -169310012 + AT_rich Low_complexity Low_complexity 1 22 0 1931 81 81 0 chr4 33018340 33018613 -169309734 + AluSq SINE Alu 1 295 -18 1503 124 39 8 chr4 33018849 33019083 -169309264 + AluSg SINE Alu 50 290 -20 252 0 0 0 chr4 33020035 33020063 -169308284 + (TG)n Simple_repeat Simple_repeat 2 29 0 391 309 42 24 chr4 33020243 33020408 -169307939 + MIR SINE MIR 2 169 -93 250 342 117 0 chr4 33022027 33022138 -169306209 + MIR SINE MIR 21 144 -64 2078 109 0 34 chr4 33022181 33022503 -169305844 - AluSx SINE Alu -1 311 1 335 121 17 0 chr4 33023402 33023460 -169304887 + AluS SINE Alu 1 59 -249 261 0 0 0 chr4 33024815 33024844 -169303503 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1960 123 0 0 chr4 33024845 33025122 -169303225 - AluSc SINE Alu -32 277 1 225 0 0 0 chr4 33025229 33025254 -169303093 + (T)n Simple_repeat Simple_repeat 1 25 0 576 189 27 0 chr4 33026362 33026473 -169301874 + FLAM_A SINE Alu 10 123 -19 2124 121 3 0 chr4 33031985 33032291 -169296056 - AluSx SINE Alu -5 307 1 219 231 0 19 chr4 33032505 33032557 -169295790 + CT-rich Low_complexity Low_complexity 2 52 0 180 356 0 0 chr4 33032847 33032906 -169295441 - MIR SINE MIR -19 243 185 1766 178 3 7 chr4 33033031 33033324 -169295023 - AluSx SINE Alu -20 292 1 265 324 162 0 chr4 33034370 33034481 -169293866 - MIR SINE MIR -59 149 21 383 275 33 17 chr4 33034618 33034738 -169293609 - L2 LINE L2 -1 3312 3191 281 319 33 11 chr4 33034776 33034867 -169293480 - L2 LINE L2 -15 3298 3206 1360 146 0 0 chr4 33035469 33035674 -169292673 + AluSg/x SINE Alu 108 312 0 1612 82 0 0 chr4 33036371 33036577 -169291770 - AluY SINE Alu -105 206 1 2308 87 3 0 chr4 33036675 33036973 -169291374 - AluSp SINE Alu -14 299 1 413 298 55 9 chr4 33037466 33037626 -169290721 + MIR SINE MIR 43 205 -57 1383 225 53 50 chr4 33037641 33038135 -169290212 - MER39 LTR ERV1 0 707 1 231 88 0 0 chr4 33039071 33039105 -169289242 + (TG)n Simple_repeat Simple_repeat 1 34 0 463 306 19 38 chr4 33045379 33045539 -169282808 - MIR SINE MIR -58 204 48 1750 169 6 13 chr4 33045777 33046091 -169282256 + AluJb SINE Alu 1 312 0 550 308 76 32 chr4 33046356 33046606 -169281741 + MIR SINE MIR 2 262 0 22 35 0 0 chr4 33049856 33049885 -169278462 + AT_rich Low_complexity Low_complexity 1 29 0 28 48 0 0 chr4 33050164 33050206 -169278141 + AT_rich Low_complexity Low_complexity 1 42 0 196 214 36 18 chr4 33050239 33050295 -169278052 + MIR SINE MIR 81 137 -125 680 175 0 8 chr4 33050299 33050419 -169277928 - FLAM_A SINE Alu -14 119 1 1845 119 90 0 chr4 33052097 33052375 -169275972 - AluSx SINE Alu -9 303 1 2245 66 0 7 chr4 33052384 33052713 -169275634 - AluY SINE Alu 0 327 1 24 0 0 0 chr4 33053764 33053788 -169274559 + AT_rich Low_complexity Low_complexity 1 24 0 187 290 46 92 chr4 33054094 33054225 -169274122 - L3 LINE CR1 -1348 229 105 2092 117 0 20 chr4 33054997 33055296 -169273051 - AluSg SINE Alu -16 294 2 257 300 9 9 chr4 33055431 33055541 -169272806 + (TA)n Simple_repeat Simple_repeat 2 111 0 236 419 22 13 chr4 33055751 33055980 -169272367 - L2 LINE L2 -222 3050 2820 205 195 0 0 chr4 33056645 33056686 -169271661 + (TAA)n Simple_repeat Simple_repeat 3 43 0 259 320 0 13 chr4 33057243 33057321 -169271026 - MIR SINE MIR -115 147 71 367 373 104 19 chr4 33057459 33058217 -169270130 - L2 LINE L2 -1504 1810 988 1569 199 7 10 chr4 33058578 33058869 -169269478 - AluJo SINE Alu -16 296 7 744 219 25 6 chr4 33059112 33059272 -169269075 - MLT1A1 LTR MaLR -202 163 1 2002 133 10 3 chr4 33059395 33059688 -169268659 + AluSc SINE Alu 1 295 -14 936 193 32 5 chr4 33059730 33059917 -169268430 + MLT1A1 LTR MaLR 174 365 0 593 280 129 32 chr4 33059931 33060335 -169268012 + L2 LINE L2 1702 2144 -1170 716 220 70 78 chr4 33060428 33060676 -169267671 + MIR SINE MIR 29 260 -2 671 318 99 52 chr4 33060679 33061037 -169267310 + L2 LINE L2 2327 2667 -646 1365 132 78 0 chr4 33061037 33061256 -169267091 - MER46A DNA MER2_type 0 236 1 671 318 99 52 chr4 33061256 33061446 -169266901 + L2 LINE L2 2667 2847 -466 2118 102 14 10 chr4 33061446 33061740 -169266607 - AluSg SINE Alu -15 295 1 671 318 99 52 chr4 33061740 33061909 -169266438 + L2 LINE L2 2847 3089 -224 191 323 48 0 chr4 33064530 33064592 -169263755 + MIR SINE MIR 87 151 -57 23 54 0 0 chr4 33065624 33065661 -169262686 + AT_rich Low_complexity Low_complexity 1 37 0 2124 117 7 0 chr4 33065747 33066045 -169262302 - AluSx SINE Alu -12 300 1 987 197 98 8 chr4 33066652 33066886 -169261461 - ORSL DNA AcHobo -20 255 1 212 329 73 36 chr4 33066896 33067033 -169261314 - L2 LINE L2 -214 3058 2917 240 404 93 11 chr4 33068504 33068687 -169259660 - L2 LINE L2 -41 3231 3034 2051 122 7 0 chr4 33068726 33069013 -169259334 - AluSq SINE Alu -20 293 5 270 322 29 0 chr4 33069174 33069348 -169258999 + (TA)n Simple_repeat Simple_repeat 1 179 0 3924 157 15 40 chr4 33070293 33071020 -169257327 - MER50 LTR ERV1 -23 711 3 186 43 0 0 chr4 33071854 33071877 -169256470 + (TAA)n Simple_repeat Simple_repeat 2 24 0 210 315 167 10 chr4 33072210 33072362 -169255985 + MIR SINE MIR 16 191 -71 849 283 121 35 chr4 33072824 33073420 -169254927 + L2 LINE L2 2590 3229 -84 476 291 126 27 chr4 33076095 33076318 -169252029 - MIR SINE MIR -9 253 9 29 0 0 0 chr4 33077682 33077711 -169250636 + AT_rich Low_complexity Low_complexity 1 29 0 184 234 64 106 chr4 33078714 33078808 -169249539 - L2 LINE L2 -2441 873 784 747 0 0 0 chr4 33079157 33079240 -169249107 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 238 281 31 0 chr4 33081054 33081118 -169247229 + CT-rich Low_complexity Low_complexity 1 66 0 1295 172 0 9 chr4 33081800 33082021 -169246326 - AluJb SINE Alu -9 303 85 440 276 116 55 chr4 33082281 33082480 -169245867 - MIR SINE MIR -21 241 31 539 299 12 24 chr4 33082976 33083143 -169245204 + MIR SINE MIR 13 177 -85 193 196 109 0 chr4 33086842 33086888 -169241459 + MIR SINE MIR 128 178 -84 192 167 0 0 chr4 33087387 33087435 -169240912 + CT-rich Low_complexity Low_complexity 4 51 0 321 315 54 8 chr4 33087766 33087896 -169240451 - L2 LINE L2 0 3272 3137 1628 211 74 76 chr4 33088234 33088732 -169239615 - MLT1D LTR MaLR 0 505 9 638 242 37 48 chr4 33089189 33089246 -169239101 - MIR SINE MIR -28 234 178 828 244 11 0 chr4 33089246 33089422 -169238925 + MER45A DNA AcHobo 1 178 0 638 242 37 48 chr4 33089422 33089585 -169238762 - MIR SINE MIR -84 178 14 260 250 29 15 chr4 33089612 33089680 -169238667 + L2 LINE L2 3200 3268 -4 276 149 0 0 chr4 33089980 33090027 -169238320 + (TA)n Simple_repeat Simple_repeat 1 47 0 1897 153 6 35 chr4 33090285 33090632 -169237715 + MER1B DNA MER1_type 1 337 0 343 303 113 43 chr4 33090698 33090883 -169237464 + MIR SINE MIR 9 206 -56 253 304 75 99 chr4 33091245 33091446 -169236901 - L2 LINE L2 -1 3271 3076 33 43 0 0 chr4 33092906 33092953 -169235394 + AT_rich Low_complexity Low_complexity 1 47 0 184 77 51 0 chr4 33092953 33092992 -169235355 + (TA)n Simple_repeat Simple_repeat 2 42 0 207 114 0 0 chr4 33093999 33094034 -169234313 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 21 0 0 0 chr4 33094147 33094168 -169234179 + AT_rich Low_complexity Low_complexity 1 21 0 191 348 29 0 chr4 33094376 33094445 -169233902 + MIR SINE MIR 86 156 -106 225 0 0 0 chr4 33095104 33095129 -169233218 + (TG)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr4 33095577 33095606 -169232741 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 33097028 33097049 -169231298 + AT_rich Low_complexity Low_complexity 1 21 0 228 319 97 40 chr4 33097711 33097937 -169230410 - L2 LINE L2 -465 2849 2611 * 311 328 106 10 chr4 33097935 33098133 -169230214 + L2 LINE L2 3097 3313 0 23 0 0 0 chr4 33098136 33098159 -169230188 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 33098271 33098294 -169230053 + AT_rich Low_complexity Low_complexity 1 23 0 1720 154 29 0 chr4 33098295 33098568 -169229779 - AluSx SINE Alu -31 281 1 198 128 0 0 chr4 33098990 33099029 -169229318 + (A)n Simple_repeat Simple_repeat 1 39 0 1479 206 24 10 chr4 33100671 33100967 -169227380 - AluJo SINE Alu -12 300 1 900 238 51 28 chr4 33101209 33101258 -169227089 - MER20 DNA MER1_type 0 219 173 1749 176 88 29 chr4 33101258 33101632 -169226715 + MSTD LTR MaLR 1 396 0 900 238 51 28 chr4 33101632 33101796 -169226551 - MER20 DNA MER1_type -46 173 1 1698 186 4 0 chr4 33101917 33102196 -169226151 + AluJo SINE Alu 1 280 -32 180 77 0 0 chr4 33102196 33102222 -169226125 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 22 0 0 0 chr4 33103338 33103360 -169224987 + AT_rich Low_complexity Low_complexity 1 22 0 198 313 30 15 chr4 33104709 33104776 -169223571 + MIR SINE MIR 75 142 -66 325 317 30 10 chr4 33105520 33105621 -169222726 - MIR3 SINE MIR -12 196 94 228 35 0 0 chr4 33106272 33106301 -169222046 + (TG)n Simple_repeat Simple_repeat 2 30 0 268 208 0 0 chr4 33106685 33106733 -169221614 + MIR SINE MIR 91 138 -124 207 0 0 0 chr4 33107957 33107980 -169220367 + (A)n Simple_repeat Simple_repeat 1 23 0 340 275 31 25 chr4 33108056 33108216 -169220131 + MER117 DNA MER1_type 1 161 -36 213 39 0 0 chr4 33108957 33108983 -169219364 + (A)n Simple_repeat Simple_repeat 1 26 0 389 270 63 21 chr4 33109055 33109244 -169219103 + MER117 DNA MER1_type 1 197 0 262 288 86 26 chr4 33109264 33109398 -169218949 + MIR SINE MIR 3 143 -65 27 0 0 0 chr4 33109684 33109711 -169218636 + AT_rich Low_complexity Low_complexity 1 27 0 706 161 50 68 chr4 33110328 33110489 -169217858 - MER20 DNA MER1_type -7 212 55 28 0 0 0 chr4 33112820 33112848 -169215499 + AT_rich Low_complexity Low_complexity 1 28 0 208 279 0 0 chr4 33113713 33113756 -169214591 - MIR3 SINE MIR -52 156 114 2258 116 0 0 chr4 33115555 33115865 -169212482 - AluSx SINE Alu -2 310 1 432 279 116 43 chr4 33116153 33116384 -169211963 - MIR SINE MIR 0 262 13 201 253 69 35 chr4 33117638 33117725 -169210622 + MIR3 SINE MIR 119 208 0 301 287 10 40 chr4 33118139 33118240 -169210107 - MIR3 SINE MIR -23 185 88 942 207 74 0 chr4 33119516 33119719 -169208628 + MER20 DNA MER1_type 2 219 0 333 0 0 0 chr4 33120644 33120681 -169207666 + (CA)n Simple_repeat Simple_repeat 2 38 0 529 317 127 53 chr4 33120994 33121716 -169206631 + L3 LINE CR1 753 1528 -49 1015 269 145 31 chr4 33172246 33172730 -169155617 + MLT1H LTR MaLR 3 541 -8 360 0 0 0 chr4 33173137 33173177 -169155170 + (T)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chr4 33173302 33173323 -169155024 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 33173412 33173435 -169154912 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr4 33173876 33173902 -169154445 + AT_rich Low_complexity Low_complexity 1 26 0 360 0 0 0 chr4 33174032 33174072 -169154275 + (T)n Simple_repeat Simple_repeat 1 40 0 192 298 48 0 chr4 33174541 33174625 -169153722 - MIR SINE MIR -50 212 125 2686 16 0 10 chr4 33176415 33176727 -169151620 - AluYb8 SINE Alu -9 309 1 24 0 0 0 chr4 33177682 33177706 -169150641 + AT_rich Low_complexity Low_complexity 1 24 0 1908 125 0 0 chr4 33178259 33178531 -169149816 + AluY SINE Alu 24 295 -16 253 286 118 17 chr4 33179596 33179715 -169148632 + MIR SINE MIR 121 251 -11 21 36 0 0 chr4 33180072 33180100 -169148247 + AT_rich Low_complexity Low_complexity 1 28 0 209 200 33 0 chr4 33181414 33181474 -169146873 + (TATG)n Simple_repeat Simple_repeat 3 64 0 2209 101 7 0 chr4 33181755 33182062 -169146285 + AluSp SINE Alu 1 309 -4 230 177 0 48 chr4 33182520 33182582 -169145765 + A-rich Low_complexity Low_complexity 3 61 0 279 334 87 49 chr4 33182585 33182768 -169145579 + MIR SINE MIR 28 214 -48 875 311 80 27 chr4 33182846 33183258 -169145089 + L2 LINE L2 2879 3312 -1 1508 204 32 55 chr4 33184577 33184979 -169143368 + MSTD LTR MaLR 4 396 0 21 36 0 0 chr4 33186822 33186850 -169141497 + AT_rich Low_complexity Low_complexity 1 28 0 277 232 9 89 chr4 33187228 33187340 -169141007 + MLT1H LTR MaLR 4 106 -443 1208 226 84 42 chr4 33187347 33187776 -169140571 - MLT1C LTR MaLR -16 451 5 577 267 87 103 chr4 33187780 33188039 -169140308 + MLT1H LTR MaLR 111 362 -187 1958 127 65 39 chr4 33188039 33188394 -169139953 + THE1B LTR MaLR 1 364 0 577 267 87 103 chr4 33188394 33188580 -169139767 + MLT1H LTR MaLR 362 549 0 1296 139 0 14 chr4 33189216 33189425 -169138922 + AluSg/x SINE Alu 105 310 -2 242 133 67 50 chr4 33189562 33189622 -169138725 - MLT1H LTR MaLR -202 340 280 1813 64 0 0 chr4 33189716 33189951 -169138396 - L1PA5 LINE L1 0 6154 5920 280 248 0 115 chr4 33189952 33190009 -169138338 - MLT1H LTR MaLR -285 264 225 1784 146 42 73 chr4 33190009 33190394 -169137953 - THE1C LTR MaLR 0 375 3 280 248 0 115 chr4 33190394 33190449 -169137898 - MLT1H LTR MaLR -324 225 165 201 226 0 0 chr4 33190897 33190950 -169137397 + (TG)n Simple_repeat Simple_repeat 2 54 0 1277 228 65 20 chr4 33191835 33192186 -169136161 - MLT1D LTR MaLR 0 505 139 25 65 0 0 chr4 33192321 33192367 -169135980 + AT_rich Low_complexity Low_complexity 1 46 0 1508 112 10 0 chr4 33192577 33192782 -169135565 - AluSc SINE Alu -20 289 83 302 169 26 78 chr4 33193345 33193422 -169134925 + MLT1L LTR MaLR 156 228 -387 661 259 45 77 chr4 33193426 33193868 -169134479 - MER57A LTR ERV1 -4 399 1 393 241 63 38 chr4 33193987 33194145 -169134202 + MLT1L LTR MaLR 421 582 -33 808 268 50 71 chr4 33194267 33194607 -169133740 - MLT1A2 LTR MaLR -41 333 1 853 241 113 43 chr4 33194722 33194979 -169133368 - AluJo SINE Alu -35 277 3 26 30 0 0 chr4 33195074 33195107 -169133240 + AT_rich Low_complexity Low_complexity 1 33 0 238 307 10 30 chr4 33195207 33195308 -169133039 - L1ME LINE L1 -394 5727 5629 430 226 33 122 chr4 33195834 33196015 -169132332 - MER91B DNA MER1_type -6 184 20 219 263 0 0 chr4 33196105 33196185 -169132162 + (TA)n Simple_repeat Simple_repeat 1 80 0 225 0 0 0 chr4 33196244 33196269 -169132078 + (CA)n Simple_repeat Simple_repeat 2 26 0 318 147 0 0 chr4 33196474 33196542 -169131805 + (TC)n Simple_repeat Simple_repeat 1 68 0 342 0 0 0 chr4 33196542 33196580 -169131767 + (CA)n Simple_repeat Simple_repeat 1 38 0 193 94 62 16 chr4 33197066 33197130 -169131217 + (TA)n Simple_repeat Simple_repeat 2 68 0 23 33 0 0 chr4 33197141 33197171 -169131176 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 33197202 33197225 -169131122 + AT_rich Low_complexity Low_complexity 1 23 0 1656 95 50 0 chr4 33197403 33197625 -169130722 + AluSc SINE Alu 59 291 -18 1496 199 36 0 chr4 33197625 33197906 -169130441 - Tigger3(Golem) DNA MER2_type -2738 291 1 593 238 0 16 chr4 33197920 33198046 -169130301 - FLAM_A SINE Alu -9 124 1 444 301 81 17 chr4 33199161 33199397 -169128950 - MER112 DNA MER1_type -4 256 6 418 243 71 62 chr4 33200494 33200704 -169127643 + MLT1J1 LTR MaLR 1 212 -234 252 329 168 31 chr4 33200926 33201087 -169127260 - MIR SINE MIR -58 204 22 585 302 40 22 chr4 33201478 33201700 -169126647 + MIR SINE MIR 31 256 -6 2300 73 0 7 chr4 33202425 33202726 -169125621 + AluY SINE Alu 1 299 -12 243 250 30 10 chr4 33202821 33202921 -169125426 + (TA)n Simple_repeat Simple_repeat 2 103 0 191 382 91 30 chr4 33204512 33204711 -169123636 + L2 LINE L2 2731 2941 -373 2049 104 0 39 chr4 33205621 33205928 -169122419 - AluSq SINE Alu -18 295 1 2549 133 21 25 chr4 33206037 33206473 -169121874 - Tigger2a DNA MER2_type 0 434 1 340 262 11 55 chr4 33206473 33206687 -169121660 + MER112 DNA MER1_type 47 248 -12 2010 192 39 15 chr4 33206836 33207248 -169121099 - MER61C LTR ERV1 0 434 13 369 121 0 0 chr4 33207532 33207590 -169120757 + L1MA2 LINE L1 6233 6290 -14 2167 126 0 7 chr4 33207620 33207922 -169120425 + AluSx SINE Alu 1 300 -12 28 0 0 0 chr4 33208370 33208398 -169119949 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 33208417 33208438 -169119909 + AT_rich Low_complexity Low_complexity 1 21 0 369 307 135 43 chr4 33208504 33208830 -169119517 + L2 LINE L2 2619 2974 -340 629 279 17 6 chr4 33209270 33209449 -169118898 - MIR SINE MIR -80 182 2 25 0 0 0 chr4 33210059 33210084 -169118263 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr4 33212072 33212097 -169116250 + AT_rich Low_complexity Low_complexity 1 25 0 306 0 0 0 chr4 33212791 33212825 -169115522 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr4 33214122 33214143 -169114204 + AT_rich Low_complexity Low_complexity 1 21 0 206 163 0 20 chr4 33214623 33214672 -169113675 + T-rich Low_complexity Low_complexity 4 51 0 1211 207 28 38 chr4 33214674 33214964 -169113383 - AluJo SINE Alu -24 288 2 22 56 0 0 chr4 33216322 33216358 -169111989 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr4 33216761 33216799 -169111548 + AT_rich Low_complexity Low_complexity 1 38 0 2349 97 0 0 chr4 33216806 33217104 -169111243 - AluSc SINE Alu -11 298 1 565 198 9 0 chr4 33217319 33217430 -169110917 - MER58 DNA MER1_type 0 2420 2309 393 301 9 9 chr4 33217435 33217548 -169110799 - MER58 DNA MER1_type -2303 117 5 273 208 292 0 chr4 33217627 33217723 -169110624 - MER94 DNA DNA -10 124 1 210 330 44 11 chr4 33220265 33220356 -169107991 - L2 LINE L2 -37 3235 3142 2919 112 12 0 chr4 33220978 33221381 -169106966 + MLT2A2 LTR ERVL 1 408 -45 277 256 0 0 chr4 33221392 33221474 -169106873 - L1MC4 LINE L1 -1347 6695 6614 327 253 0 0 chr4 33221474 33221569 -169106778 + (TA)n Simple_repeat Simple_repeat 2 96 0 274 192 0 0 chr4 33221586 33221638 -169106709 + MLT2A1 LTR ERVL 391 442 -2 1541 220 46 29 chr4 33221644 33221994 -169106353 - MLT1A1 LTR MaLR -3 362 7 288 136 17 17 chr4 33222120 33222179 -169106168 - MER3 DNA MER1_type -8 201 143 228 162 0 59 chr4 33223654 33223722 -169104625 + A-rich Low_complexity Low_complexity 3 66 0 29 47 0 0 chr4 33224973 33225016 -169103331 + AT_rich Low_complexity Low_complexity 1 43 0 740 268 64 5 chr4 33225042 33225262 -169103085 - MIR SINE MIR -26 236 4 297 339 0 34 chr4 33225906 33226024 -169102323 + L2 LINE L2 3142 3255 -17 216 0 0 0 chr4 33227437 33227461 -169100886 + (TG)n Simple_repeat Simple_repeat 2 25 0 295 130 0 0 chr4 33227513 33227559 -169100788 + MADE1 DNA Mariner 35 80 0 530 70 0 0 chr4 33227563 33227634 -169100713 + MADE1 DNA Mariner 10 80 0 439 321 59 5 chr4 33227868 33228076 -169100271 + MIR SINE MIR 31 260 -2 214 365 24 35 chr4 33228808 33228978 -169099369 - MER5A DNA MER1_type -5 184 17 * 320 299 39 32 chr4 33228826 33228980 -169099367 + MER5A DNA MER1_type 35 189 0 218 246 88 0 chr4 33229119 33229176 -169099171 + MIR SINE MIR 85 146 -62 578 118 0 0 chr4 33229919 33230004 -169098343 + L1MC1 LINE L1 6236 6320 -13 186 43 0 0 chr4 33230732 33230755 -169097592 + (TG)n Simple_repeat Simple_repeat 2 24 0 27 0 0 0 chr4 33231521 33231548 -169096799 + AT_rich Low_complexity Low_complexity 1 27 0 195 386 28 28 chr4 33234684 33234860 -169093487 - L2 LINE L2 -198 3074 2899 448 316 93 25 chr4 33235478 33235793 -169092554 + L2 LINE L2 2692 3032 -281 1949 119 26 17 chr4 33236196 33236498 -169091849 + AluSx SINE Alu 1 305 -7 239 226 12 48 chr4 33238445 33238529 -169089818 + L1 LINE L1 3836 3916 -2230 2428 84 7 0 chr4 33238819 33239129 -169089218 + AluSp SINE Alu 1 312 -1 871 214 6 0 chr4 33239986 33240145 -169088202 - FRAM SINE Alu -24 152 1 631 149 14 78 chr4 33240168 33240309 -169088038 - FLAM_C SINE Alu 0 143 12 225 0 0 0 chr4 33240330 33240355 -169087992 + (T)n Simple_repeat Simple_repeat 1 25 0 549 268 72 66 chr4 33240356 33240991 -169087356 + L1ME3 LINE L1 4595 5233 -913 495 0 0 0 chr4 33241000 33241055 -169087292 + (TA)n Simple_repeat Simple_repeat 2 56 0 706 302 87 54 chr4 33241094 33241554 -169086793 + L1ME3 LINE L1 5355 5829 -333 2063 122 42 33 chr4 33242443 33242804 -169085543 + THE1B LTR MaLR 1 364 0 2119 102 0 52 chr4 33243452 33243776 -169084571 - AluSg SINE Alu -3 307 1 1852 141 15 41 chr4 33244293 33244510 -169083837 + L1PB3 LINE L1 5820 6026 -128 2452 63 0 22 chr4 33244510 33244828 -169083519 + AluY SINE Alu 1 311 0 1852 141 15 41 chr4 33244828 33244951 -169083396 + L1PB3 LINE L1 6026 6151 -3 1037 165 43 57 chr4 33246131 33246361 -169081986 - MSTB LTR MaLR 0 426 200 216 191 24 0 chr4 33246362 33246404 -169081943 + GA-rich Low_complexity Low_complexity 3 45 0 894 78 0 0 chr4 33246506 33246621 -169081726 - THE1-int LTR MaLR -80 1500 1386 1357 130 43 26 chr4 33246624 33246789 -169081558 - MSTB LTR MaLR -191 235 63 5221 72 12 1 chr4 33246789 33247473 -169080874 - LTR8 LTR ERV1 0 691 1 1357 130 43 26 chr4 33247473 33247538 -169080809 - MSTB LTR MaLR -363 63 1 229 200 20 20 chr4 33247671 33247721 -169080626 + CT-rich Low_complexity Low_complexity 2 51 0 583 297 77 5 chr4 33249753 33249962 -169078385 - MIR SINE MIR -38 224 1 22 35 0 0 chr4 33251251 33251280 -169077067 + AT_rich Low_complexity Low_complexity 1 29 0 1641 104 16 0 chr4 33252115 33252366 -169075981 - L1MA2 LINE L1 0 6304 6050 25 75 0 0 chr4 33253220 33253273 -169075074 + AT_rich Low_complexity Low_complexity 1 53 0 243 245 0 0 chr4 33254288 33254341 -169074006 - L3 LINE CR1 -2 1575 1523 23 92 0 0 chr4 33257384 33257449 -169070898 + AT_rich Low_complexity Low_complexity 1 65 0 210 238 16 0 chr4 33258747 33258810 -169069537 + (TG)n Simple_repeat Simple_repeat 1 64 0 2099 105 11 0 chr4 33259016 33259384 -169068963 + AluSx SINE Alu 3 373 0 492 18 0 0 chr4 33259421 33259478 -169068869 + (TA)n Simple_repeat Simple_repeat 1 57 0 243 315 56 0 chr4 33260376 33260465 -169067882 + MIR SINE MIR 15 108 -154 1714 193 80 3 chr4 33260605 33260967 -169067380 - MLT1B LTR MaLR 0 390 1 376 295 118 8 chr4 33261411 33261616 -169066731 - MIR SINE MIR -14 248 14 279 173 0 0 chr4 33261814 33261866 -169066481 + GA-rich Low_complexity Low_complexity 3 54 0 199 357 147 35 chr4 33262394 33262537 -169065810 - MIR3 SINE MIR -15 193 35 638 116 4 2 chr4 33264280 33264529 -169063818 + AluSq SINE Alu 1 299 -14 180 0 0 0 chr4 33265111 33265131 -169063216 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1872 128 20 10 chr4 33265168 33265466 -169062881 - AluSx SINE Alu -1 311 11 238 341 111 46 chr4 33265708 33266121 -169062226 + L2 LINE L2 2828 3267 -5 398 319 63 31 chr4 33267792 33267983 -169060364 - MIR SINE MIR -36 226 30 2355 94 0 0 chr4 33268356 33268653 -169059694 + AluY SINE Alu 1 297 -14 1811 124 0 8 chr4 33269027 33269293 -169059054 - AluSx SINE Alu -9 303 40 331 300 247 0 chr4 33269582 33269772 -169058575 + MIR SINE MIR 25 261 -1 23 0 0 0 chr4 33270155 33270178 -169058169 + AT_rich Low_complexity Low_complexity 1 23 0 2096 124 3 3 chr4 33271550 33271856 -169056491 - AluSx SINE Alu -6 306 1 408 55 0 0 chr4 33272336 33272391 -169055956 + (CA)n Simple_repeat Simple_repeat 1 55 0 292 234 0 26 chr4 33272394 33272471 -169055876 + GA-rich Low_complexity Low_complexity 3 77 0 23 0 0 0 chr4 33273046 33273069 -169055278 + AT_rich Low_complexity Low_complexity 1 23 0 1776 77 18 154 chr4 33274567 33274904 -169053443 - AluSp SINE Alu -12 291 1 184 255 64 0 chr4 33275809 33275856 -169052491 + L2 LINE L2 3219 3268 -4 180 152 0 0 chr4 33276260 33276293 -169052054 + A-rich Low_complexity Low_complexity 1 33 0 3897 159 18 26 chr4 33277136 33277852 -169050495 - MER50 LTR ERV1 -24 710 1 403 265 11 54 chr4 33277913 33278098 -169050249 + CT-rich Low_complexity Low_complexity 4 180 0 234 217 0 0 chr4 33278111 33278180 -169050167 + T-rich Low_complexity Low_complexity 1 69 0 25 65 0 0 chr4 33279143 33279189 -169049158 + AT_rich Low_complexity Low_complexity 1 46 0 27 0 0 0 chr4 33280723 33280750 -169047597 + AT_rich Low_complexity Low_complexity 1 27 0 2074 199 72 94 chr4 33281098 33281942 -169046405 - LTR1B LTR ERV1 0 826 1 337 302 249 0 chr4 33281961 33282150 -169046197 - MIR SINE MIR -13 249 14 2057 203 17 19 chr4 33283211 33283630 -169044717 + MER47B DNA MER2_type 1 418 0 651 267 14 0 chr4 33283659 33283805 -169044542 + MIR SINE MIR 4 151 -111 1628 127 15 112 chr4 33283849 33284180 -169044167 - AluSx SINE Alu -1 301 3 240 278 14 0 chr4 33285639 33285711 -169042636 + MER112 DNA MER1_type 2 74 -186 242 244 73 0 chr4 33285735 33285817 -169042530 - L1MC4 LINE L1 -1341 6701 6614 * 269 182 32 13 chr4 33285741 33285835 -169042512 + L1MC4 LINE L1 1995 6983 -1339 219 254 0 0 chr4 33285835 33285898 -169042449 + (CATA)n Simple_repeat Simple_repeat 2 64 0 23 54 0 0 chr4 33287329 33287366 -169040981 + AT_rich Low_complexity Low_complexity 1 37 0 1906 109 18 18 chr4 33287366 33287640 -169040707 - AluSx SINE Alu -28 284 11 1081 260 78 27 chr4 33288246 33288619 -169039728 - MLT1D LTR MaLR 0 505 114 400 198 12 23 chr4 33288747 33288833 -169039514 - MLT1D LTR MaLR -418 87 3 2197 121 0 0 chr4 33291961 33292268 -169036079 + AluSc SINE Alu 1 307 -2 701 281 212 40 chr4 33292374 33292823 -169035524 - MLT1H LTR MaLR -2 547 22 752 227 93 53 chr4 33293364 33293685 -169034662 - MER46C DNA MER2_type -4 334 1 790 317 46 8 chr4 33293689 33293929 -169034418 - MIR SINE MIR -6 256 8 530 242 112 40 chr4 33293992 33294215 -169034132 - MIR SINE MIR -4 258 20 2006 113 3 3 chr4 33295082 33295410 -169032937 + AluSx SINE Alu 1 328 0 1872 136 3 18 chr4 33296499 33296785 -169031562 + AluSx SINE Alu 29 310 -2 209 343 150 21 chr4 33297122 33297262 -169031085 + L3b LINE CR1 1285 1442 -141 210 71 0 0 chr4 33298390 33298418 -169029929 + (A)n Simple_repeat Simple_repeat 1 28 0 231 88 0 0 chr4 33300894 33300928 -169027419 + (A)n Simple_repeat Simple_repeat 1 34 0 1075 217 31 11 chr4 33301692 33302183 -169026164 - MER34 LTR ERV1 -3 539 12 635 84 11 0 chr4 33302206 33302301 -169026046 + (TCTA)n Simple_repeat Simple_repeat 4 99 0 1433 52 0 0 chr4 33302301 33302475 -169025872 - L1PA7 LINE L1 -15 6139 5966 2027 97 10 55 chr4 33302704 33303015 -169025332 + AluSg SINE Alu 1 297 -13 230 377 142 9 chr4 33304995 33305101 -169023246 - L2 LINE L2 0 3272 3153 216 179 0 0 chr4 33305108 33305147 -169023200 + (TG)n Simple_repeat Simple_repeat 2 40 0 1492 167 161 23 chr4 33305301 33305649 -169022698 + MSTD LTR MaLR 1 396 0 211 322 61 70 chr4 33306065 33306180 -169022167 - L2 LINE L2 -1 3312 3199 2016 126 13 7 chr4 33306212 33306514 -169021833 - AluSx SINE Alu -8 304 1 780 149 6 31 chr4 33306516 33306677 -169021670 - L1MC3 LINE L1 -7 7778 7622 336 191 12 95 chr4 33306721 33306805 -169021542 - MLT2B3 LTR ERVL -268 286 210 1983 166 51 31 chr4 33306805 33307352 -169020995 - MLT2A2 LTR ERVL 0 554 1 1064 184 75 0 chr4 33307352 33307551 -169020796 - MLT2B3 LTR ERVL -340 214 1 3002 211 41 19 chr4 33307551 33308007 -169020340 - L1MC3 LINE L1 -163 7622 7142 2236 101 0 0 chr4 33308007 33308295 -169020052 - AluSg SINE Alu -22 288 1 3002 211 41 19 chr4 33308295 33308572 -169019775 - L1MC3 LINE L1 -643 7142 6873 2130 138 3 6 chr4 33308696 33309008 -169019339 - AluSx SINE Alu -1 311 1 435 38 0 0 chr4 33310093 33310146 -169018201 + (TC)n Simple_repeat Simple_repeat 2 54 0 27 0 0 0 chr4 33311040 33311067 -169017280 + AT_rich Low_complexity Low_complexity 1 27 0 198 0 0 0 chr4 33311067 33311089 -169017258 + (TG)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr4 33311139 33311160 -169017187 + AT_rich Low_complexity Low_complexity 1 21 0 272 182 11 0 chr4 33311243 33311331 -169017016 + (CA)n Simple_repeat Simple_repeat 1 89 0 1069 180 10 10 chr4 33311372 33311578 -169016769 - MER46A DNA MER2_type -29 207 2 3451 124 42 64 chr4 33312171 33312347 -169016000 + Tigger3b DNA MER2_type 1 179 -2849 1996 123 10 7 chr4 33312347 33312640 -169015707 - AluSx SINE Alu -18 294 1 3451 124 42 64 chr4 33312640 33313155 -169015192 + Tigger3b DNA MER2_type 179 677 -554 5515 131 26 4 chr4 33313200 33314646 -169013701 - L1PA11 LINE L1 0 6174 4699 2873 113 38 47 chr4 33314646 33314764 -169013583 + Tigger3b DNA MER2_type 660 778 -2251 1661 147 0 89 chr4 33314764 33315078 -169013269 - AluSx SINE Alu -26 286 1 2873 113 38 47 chr4 33315078 33315510 -169012837 + Tigger3b DNA MER2_type 778 1205 -27 332 326 90 15 chr4 33315949 33316283 -169012064 - MARNA DNA Mariner -155 431 73 2286 103 3 6 chr4 33316488 33316799 -169011548 - AluY SINE Alu -1 310 1 29 28 0 0 chr4 33316856 33316892 -169011455 + AT_rich Low_complexity Low_complexity 1 36 0 603 205 54 12 chr4 33317018 33317184 -169011163 - MER96B DNA MER1_type? -1 416 244 2358 83 0 13 chr4 33317383 33317696 -169010651 - AluY SINE Alu -2 309 1 456 367 57 16 chr4 33318504 33318752 -169009595 + MIR SINE MIR 1 258 -4 21 0 0 0 chr4 33319150 33319171 -169009176 + AT_rich Low_complexity Low_complexity 1 21 0 273 114 0 0 chr4 33319467 33319511 -169008836 - MADE1 DNA Mariner 0 80 37 388 288 0 30 chr4 33319575 33319707 -169008640 - MLT1L LTR MaLR -129 486 359 294 29 0 0 chr4 33319989 33320024 -169008323 + (CA)n Simple_repeat Simple_repeat 2 36 0 2201 95 3 7 chr4 33321008 33321303 -169007044 + AluSg SINE Alu 1 294 -16 1913 110 49 36 chr4 33322535 33322843 -169005504 + AluSp SINE Alu 1 312 -1 1880 134 58 15 chr4 33323317 33323646 -169004701 - MER61A LTR ERV1 0 343 1 4899 149 120 27 chr4 33323867 33325276 -169003071 - pTR5 LTR ERV1 0 2438 741 275 330 141 19 chr4 33325592 33326074 -169002273 + HAL1b LINE L1 252 792 -556 2298 132 31 8 chr4 33326426 33326782 -169001565 - THE1B LTR MaLR 0 364 1 349 351 67 14 chr4 33326857 33327065 -169001282 - L3 LINE CR1 -129 1448 1230 1840 132 38 14 chr4 33328572 33328861 -168999486 - AluSx SINE Alu -16 296 1 22 0 0 0 chr4 33329341 33329363 -168998984 + AT_rich Low_complexity Low_complexity 1 22 0 270 223 36 57 chr4 33329582 33329717 -168998630 + MLT1J2 LTR MaLR 52 144 -306 26 93 0 0 chr4 33331194 33331269 -168997078 + AT_rich Low_complexity Low_complexity 1 75 0 219 139 0 0 chr4 33332082 33332118 -168996229 + (A)n Simple_repeat Simple_repeat 1 36 0 2676 94 3 0 chr4 33332602 33332963 -168995384 + THE1B LTR MaLR 1 362 -2 2060 118 12 43 chr4 33335128 33335450 -168992897 - AluSx SINE Alu 0 312 1 670 269 65 62 chr4 33335583 33335681 -168992666 + MLT1F LTR MaLR 1 97 -445 2114 136 0 10 chr4 33335681 33335990 -168992357 + AluSx SINE Alu 1 306 -6 670 269 65 62 chr4 33335990 33336229 -168992118 + MLT1F LTR MaLR 97 339 -203 812 236 18 84 chr4 33336245 33336520 -168991827 + MLT1D-int LTR MaLR 1109 1365 -6 1065 191 96 71 chr4 33336553 33336877 -168991470 + MLT1D LTR MaLR 28 359 -146 22 35 0 0 chr4 33336921 33336950 -168991397 + AT_rich Low_complexity Low_complexity 1 29 0 500 274 10 0 chr4 33337145 33337341 -168991006 - L1ME3 LINE L1 0 6162 5965 639 259 0 6 chr4 33337478 33337640 -168990707 - L1ME3 LINE L1 -592 5572 5412 2687 131 17 0 chr4 33337642 33338061 -168990286 + MSTB1 LTR MaLR 1 426 -6 1464 273 64 27 chr4 33338067 33338091 -168990256 - L1ME3 LINE L1 -756 5414 5392 2272 99 61 32 chr4 33338091 33338156 -168990191 - THE1A LTR MaLR 0 355 293 2056 107 7 0 chr4 33338156 33338427 -168989920 + AluSq SINE Alu 41 313 0 2272 99 61 32 chr4 33338427 33338706 -168989641 - THE1A LTR MaLR -62 293 1 10427 113 34 0 chr4 33338706 33340234 -168988113 - THE1A-int LTR MaLR 0 1580 1 2387 106 23 3 chr4 33340234 33340582 -168987765 - THE1A LTR MaLR 0 355 1 1464 273 64 27 chr4 33340582 33341379 -168986968 - L1ME3 LINE L1 -777 5393 4562 711 283 49 43 chr4 33341380 33341435 -168986912 - L1ME3 LINE L1 -1617 4529 4476 4642 74 44 61 chr4 33341435 33342135 -168986212 + LTR12 LTR ERV1 1 688 0 711 283 49 43 chr4 33342135 33342585 -168985762 - L1ME3 LINE L1 -1670 4476 4021 304 218 0 76 chr4 33342579 33342695 -168985652 - L1MA7 LINE L1 -213 6083 5983 * 27 0 0 0 chr4 33342931 33342958 -168985389 + AT_rich Low_complexity Low_complexity 1 27 0 2368 78 3 0 chr4 33343120 33343414 -168984933 + AluSp SINE Alu 1 295 -18 246 295 0 0 chr4 33343442 33343537 -168984810 + L1MC4 LINE L1 6614 6708 -1334 292 264 13 3 chr4 33343632 33343729 -168984618 - L1MA7 LINE L1 -400 5770 5685 288 268 299 0 chr4 33443823 33443950 -168884397 + ERVL LTR ERVL 4161 4325 -1439 252 0 0 0 chr4 33445200 33445228 -168883119 + (TG)n Simple_repeat Simple_repeat 2 29 0 2788 16 0 0 chr4 33446677 33446988 -168881359 - AluYa5 SINE Alu 0 311 1 3388 98 6 0 chr4 33447508 33447988 -168880359 + L1PA7 LINE L1 5666 6148 -6 1057 79 0 0 chr4 33448021 33448160 -168880187 - AluY SINE Alu -15 296 158 410 262 8 16 chr4 33448164 33448286 -168880061 + L1M4 LINE L1 4942 5062 -1084 874 258 39 35 chr4 33448373 33448820 -168879527 + MLT1G3 LTR MaLR 1 549 -46 252 0 0 0 chr4 33450737 33450765 -168877582 + (TG)n Simple_repeat Simple_repeat 2 29 0 2170 78 0 0 chr4 33450765 33451049 -168877298 - AluY SINE Alu -27 284 1 247 298 16 16 chr4 33451340 33451461 -168876886 + L1ME4a LINE L1 5979 6099 -22 1915 133 20 3 chr4 33451550 33451852 -168876495 - AluSx SINE Alu -5 307 1 279 329 37 24 chr4 33452019 33452265 -168876082 - HERVL LTR ERVL -1667 3987 3739 1108 274 74 6 chr4 33452288 33452653 -168875694 - HERVL LTR ERVL -3998 998 609 1032 319 56 12 chr4 33452742 33453224 -168875123 - HERVL LTR ERVL -4492 504 2 409 219 0 0 chr4 33453225 33453307 -168875040 - LTR16A LTR ERVL 0 450 369 593 296 22 6 chr4 33453380 33453559 -168874788 - LTR16A LTR ERVL -96 354 173 420 325 58 19 chr4 33453651 33453840 -168874507 - MLT1J2 LTR MaLR 0 450 254 633 238 34 0 chr4 33453840 33453987 -168874360 + MER3 DNA MER1_type 1 152 -57 205 200 0 22 chr4 33453997 33454042 -168874305 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 732 210 24 63 chr4 33454058 33454263 -168874084 - MLT1J1 LTR MaLR -241 205 9 928 169 22 0 chr4 33454295 33454479 -168873868 - L1MA10 LINE L1 -7 6327 6140 211 104 42 0 chr4 33454479 33454527 -168873820 + (TA)n Simple_repeat Simple_repeat 1 50 0 503 175 50 25 chr4 33454529 33454649 -168873698 - L1MA10 LINE L1 -192 5976 5854 1903 191 73 35 chr4 33454719 33455170 -168873177 + MLT1D LTR MaLR 31 498 -7 322 113 0 19 chr4 33455294 33455347 -168873000 - MLT2A2 LTR ERVL -2 451 400 211 86 0 99 chr4 33455348 33455429 -168872918 + (TA)n Simple_repeat Simple_repeat 2 74 0 967 140 57 0 chr4 33455429 33455586 -168872761 - MLT2A2 LTR ERVL -40 413 248 482 318 178 17 chr4 33455597 33455952 -168872395 + L2 LINE L2 1269 1680 -1634 32 57 0 0 chr4 33456285 33456338 -168872009 + AT_rich Low_complexity Low_complexity 1 53 0 613 246 58 77 chr4 33457021 33457117 -168871230 - MIR SINE MIR 0 262 166 903 231 59 0 chr4 33457117 33457320 -168871027 - MER20 DNA MER1_type -1 218 4 613 246 58 77 chr4 33457320 33457483 -168870864 - MIR SINE MIR -96 166 8 563 282 35 59 chr4 33457945 33458147 -168870200 + MIR SINE MIR 2 198 -64 655 199 0 11 chr4 33458185 33458366 -168869981 + (TA)n Simple_repeat Simple_repeat 2 180 0 305 280 11 11 chr4 33458374 33458467 -168869880 + L1MC4 LINE L1 6614 6706 -1336 205 300 14 0 chr4 33458527 33458597 -168869750 + (TA)n Simple_repeat Simple_repeat 2 72 0 9499 94 4 6 chr4 33458823 33460201 -168868146 + L1P LINE L1 4016 5391 -755 1053 269 10 46 chr4 33460318 33460708 -168867639 + L1MB7 LINE L1 1457 1832 -4552 3881 240 64 68 chr4 33460815 33462443 -168865904 + L1MB7 LINE L1 2978 4612 -1808 641 151 84 17 chr4 33462443 33462562 -168865785 + AluJb SINE Alu 4 130 -182 3881 240 64 68 chr4 33462562 33464275 -168864072 + L1MB7 LINE L1 4612 6405 -15 21 36 0 0 chr4 33464607 33464635 -168863712 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 33466053 33466079 -168862268 + AT_rich Low_complexity Low_complexity 1 26 0 276 215 139 0 chr4 33466525 33466604 -168861743 - MLT1B LTR MaLR -2 388 299 2103 193 76 70 chr4 33466954 33466993 -168861354 - MER92B LTR ERV1 0 636 599 464 95 27 0 chr4 33466993 33467067 -168861280 + MADE1 DNA Mariner 1 76 -4 2103 193 76 70 chr4 33467067 33467659 -168860688 - MER92B LTR ERV1 -37 599 1 25 0 0 0 chr4 33468200 33468225 -168860122 + AT_rich Low_complexity Low_complexity 1 25 0 2164 95 10 3 chr4 33468374 33468669 -168859678 - AluSx SINE Alu -15 297 1 1849 298 152 36 chr4 33468811 33469933 -168858414 + L2 LINE L2 1544 2796 -518 1600 236 43 9 chr4 33469975 33470415 -168857932 + L1 LINE L1 4102 4556 -1590 1198 195 37 142 chr4 33470415 33470872 -168857475 - MLT2B1 LTR ERVL 0 414 6 316 170 19 113 chr4 33470876 33470974 -168857373 + L1 LINE L1 4551 4640 -1506 759 142 57 0 chr4 33470974 33471115 -168857232 + L1MB3 LINE L1 6034 6182 -1 254 341 37 0 chr4 33471180 33471262 -168857085 + L2 LINE L2 2893 2977 -336 * 605 288 26 31 chr4 33471257 33471486 -168856861 + L2 LINE L2 3084 3311 -2 2181 112 48 31 chr4 33473239 33473597 -168854750 - THE1B LTR MaLR 0 364 1 3968 166 13 28 chr4 33473680 33474234 -168854113 + Tigger2 DNA MER2_type 2 544 -2174 1950 134 0 32 chr4 33474234 33474548 -168853799 - AluSg SINE Alu 0 310 7 3968 166 13 28 chr4 33474548 33474747 -168853600 + Tigger2 DNA MER2_type 544 744 -1974 1649 147 12 0 chr4 33474806 33475064 -168853283 + Tigger2 DNA MER2_type 2458 2718 0 303 28 0 0 chr4 33475250 33475286 -168853061 + (TC)n Simple_repeat Simple_repeat 1 36 0 1621 188 10 0 chr4 33475287 33475575 -168852772 - AluJo SINE Alu -21 291 1 339 25 0 0 chr4 33477107 33477147 -168851200 + (CA)n Simple_repeat Simple_repeat 2 41 0 1946 179 34 3 chr4 33477149 33477500 -168850847 - MLT1A1 LTR MaLR -3 362 1 239 186 31 21 chr4 33477508 33477605 -168850742 + (TATAA)n Simple_repeat Simple_repeat 5 102 0 234 186 0 0 chr4 33477611 33477654 -168850693 - L1MC4 LINE L1 -1342 6700 6658 243 204 19 19 chr4 33477654 33477708 -168850639 + Tigger5 DNA MER2_type 2 55 -2268 547 194 11 0 chr4 33477712 33477805 -168850542 + Tigger5 DNA MER2_type 2230 2323 0 33 25 0 0 chr4 33478403 33478443 -168849904 + AT_rich Low_complexity Low_complexity 1 40 0 2262 101 0 0 chr4 33478791 33479099 -168849248 + AluSq SINE Alu 1 308 -5 31 0 0 0 chr4 33480233 33480264 -168848083 + AT_rich Low_complexity Low_complexity 1 31 0 247 386 124 13 chr4 33481704 33481857 -168846490 - MIR3 SINE MIR -9 199 30 22 0 0 0 chr4 33481893 33481915 -168846432 + AT_rich Low_complexity Low_complexity 1 22 0 4175 163 65 48 chr4 33482368 33483253 -168845094 - MER4D LTR ERV1 0 903 3 2595 151 27 0 chr4 33483259 33483671 -168844676 - MSTA LTR MaLR 0 428 6 992 175 9 33 chr4 33484476 33484687 -168843660 - MLT2C1 LTR ERVL -191 206 1 1150 211 0 30 chr4 33486527 33486764 -168841583 - AluJb SINE Alu -1 311 82 5214 257 35 30 chr4 33488303 33488340 -168840007 + L1M4 LINE L1 1 36 -6506 2203 88 0 0 chr4 33488340 33488666 -168839681 + AluY SINE Alu 1 326 0 5214 257 35 30 chr4 33488666 33490291 -168838056 + L1M4 LINE L1 36 1673 -4869 1369 226 35 46 chr4 33490405 33490777 -168837570 + MLT1B LTR MaLR 21 388 -2 180 0 0 0 chr4 33491302 33491322 -168837025 + (TG)n Simple_repeat Simple_repeat 2 21 0 2198 107 3 10 chr4 33491614 33491913 -168836434 + AluSp SINE Alu 2 298 -15 21 36 0 0 chr4 33493329 33493357 -168834990 + AT_rich Low_complexity Low_complexity 1 28 0 775 133 70 0 chr4 33493455 33493598 -168834749 + MLT1B LTR MaLR 1 153 -237 565 179 49 154 chr4 33493592 33493838 -168834509 + MLT1B LTR MaLR 70 289 -101 * 881 323 77 35 chr4 33493827 33494001 -168834346 + MER45C DNA AcHobo 93 258 -695 4775 92 12 1 chr4 33494001 33494661 -168833686 - PABL_B LTR ERV1 0 667 1 881 323 77 35 chr4 33494661 33495021 -168833326 + MER45C DNA AcHobo 258 649 -304 269 324 10 20 chr4 33495074 33495176 -168833171 - MLT1I LTR MaLR -287 122 22 3783 138 19 3 chr4 33495179 33495804 -168832543 - MER41B LTR ERV1 0 635 1 848 266 78 20 chr4 33496005 33496249 -168832098 + Charlie1a DNA MER1_type 5 262 -1193 1546 192 135 83 chr4 33496302 33496888 -168831459 + MER21B LTR ERV1 40 776 -155 180 0 0 0 chr4 33496889 33496909 -168831438 + (AATTG)n Simple_repeat Simple_repeat 2 21 0 1079 266 34 90 chr4 33496926 33497414 -168830933 + MSTD-int LTR MaLR 1027 1490 -161 998 192 89 24 chr4 33497523 33497845 -168830502 + MSTD LTR MaLR 1 396 0 374 216 95 0 chr4 33497845 33497919 -168830428 + MER21B LTR ERV1 735 815 -48 4303 216 44 22 chr4 33497957 33499105 -168829242 + Charlie1a DNA MER1_type 282 1454 -1 261 237 7 151 chr4 33499272 33499411 -168828936 - L2 LINE L2 -43 3270 3152 180 0 0 0 chr4 33499933 33499953 -168828394 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 210 167 24 0 chr4 33500234 33500276 -168828071 + (CA)n Simple_repeat Simple_repeat 2 44 0 2559 27 3 0 chr4 33500574 33500872 -168827475 + AluY SINE Alu 1 299 -12 680 333 91 25 chr4 33501207 33501649 -168826698 - L2 LINE L2 -38 3275 2805 225 319 55 55 chr4 33501657 33501839 -168826508 - L2 LINE L2 -402 2912 2731 22 35 0 0 chr4 33502018 33502047 -168826300 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 33502272 33502293 -168826054 + AT_rich Low_complexity Low_complexity 1 21 0 404 264 168 0 chr4 33503382 33503507 -168824840 - LTR67 LTR ERVL 0 557 412 1068 270 89 34 chr4 33503865 33504368 -168823979 + MLT1H LTR MaLR 12 542 -7 218 365 0 0 chr4 33505270 33505344 -168823003 + MIR SINE MIR 189 262 0 252 267 22 22 chr4 33505781 33505871 -168822476 + GA-rich Low_complexity Low_complexity 2 91 0 555 172 75 65 chr4 33505899 33506085 -168822262 - MER53 DNA DNA 0 189 2 225 348 11 0 chr4 33506251 33506343 -168822004 + L2 LINE L2 2305 2397 -917 * 409 287 102 92 chr4 33506317 33506620 -168821727 + L2 LINE L2 3006 3311 -2 205 371 37 71 chr4 33506617 33506997 -168821350 + L2 LINE L2 2362 2728 -586 * 243 125 0 0 chr4 33507049 33507089 -168821258 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 306 0 0 0 chr4 33507175 33507209 -168821138 + (TC)n Simple_repeat Simple_repeat 2 35 0 378 0 0 0 chr4 33507480 33507522 -168820825 + (TG)n Simple_repeat Simple_repeat 2 43 0 425 234 0 0 chr4 33507532 33507626 -168820721 + MER58C DNA MER1_type 27 120 -95 295 309 74 20 chr4 33507647 33507796 -168820551 - L1ME3A LINE L1 -287 5883 5727 484 250 47 16 chr4 33508013 33508141 -168820206 + L2 LINE L2 3182 3313 0 186 350 72 10 chr4 33508450 33508547 -168819800 + MIR3 SINE MIR 105 207 -1 2094 115 0 34 chr4 33508749 33509070 -168819277 + AluSg SINE Alu 1 310 0 25 0 0 0 chr4 33509151 33509176 -168819171 + AT_rich Low_complexity Low_complexity 1 25 0 2283 109 39 25 chr4 33510112 33510471 -168817876 - THE1B LTR MaLR 0 364 1 1058 232 5 14 chr4 33511358 33511578 -168816769 + MER58A DNA MER1_type 1 218 -6 4517 178 25 5 chr4 33511994 33512859 -168815488 - L1MC1 LINE L1 0 6333 5451 265 256 171 0 chr4 33513023 33513105 -168815242 + L2 LINE L2 3177 3272 0 2376 81 0 0 chr4 33514288 33514585 -168813762 - AluY SINE Alu -14 297 1 22 0 0 0 chr4 33516427 33516449 -168811898 + AT_rich Low_complexity Low_complexity 1 22 0 24 85 0 0 chr4 33516575 33516634 -168811713 + AT_rich Low_complexity Low_complexity 1 59 0 1279 131 39 9 chr4 33516803 33517092 -168811255 + THE1B LTR MaLR 1 364 0 646 161 51 106 chr4 33517169 33517370 -168810977 - MLT2D LTR ERVL 0 414 213 1319 328 100 47 chr4 33517786 33518638 -168809709 + L2 LINE L2 97 993 -2321 1047 305 41 26 chr4 33518679 33519141 -168809206 + L2 LINE L2 1893 2361 -953 2213 57 0 0 chr4 33519176 33519572 -168808775 + L1P3 LINE L1 5092 5487 -667 386 39 19 0 chr4 33520645 33520697 -168807650 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 1297 188 4 47 chr4 33520704 33520981 -168807366 - AluJo SINE Alu -37 275 11 1756 37 0 0 chr4 33521662 33521876 -168806471 - L1PA4 LINE L1 -8 6147 5934 3694 206 43 13 chr4 33522129 33522803 -168805544 + L1M4 LINE L1 7 708 -5676 260 0 57 0 chr4 33522803 33522838 -168805509 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 3694 206 43 13 chr4 33522838 33522928 -168805419 + L1M4 LINE L1 708 794 -5590 5208 62 3 9 chr4 33522943 33523623 -168804724 - L1PA8 LINE L1 -9 6163 5488 1114 207 93 23 chr4 33523626 33524022 -168804325 + L1M4 LINE L1 5196 5619 -763 222 118 0 0 chr4 33525669 33525703 -168802644 + (AATTG)n Simple_repeat Simple_repeat 4 37 0 2178 72 36 0 chr4 33525996 33526273 -168802074 - AluSg SINE Alu -23 287 1 329 290 55 64 chr4 33526918 33527232 -168801115 - L1MEd LINE L1 -2525 3604 3266 249 346 4 26 chr4 33527247 33527475 -168800872 - L1MEd LINE L1 -4972 1147 925 453 214 58 0 chr4 33529777 33529880 -168798467 - MIR SINE MIR 0 262 154 256 327 53 44 chr4 33530579 33530692 -168797655 + MIR SINE MIR 1 114 -148 4087 182 19 24 chr4 33531273 33532070 -168796277 - MER54B LTR ERVL 0 793 1 2341 64 0 0 chr4 33532418 33532725 -168795622 - AluSg SINE Alu 0 307 1 2164 115 44 3 chr4 33533382 33533722 -168794625 - LTR57 LTR ERVL -57 354 1 21 36 0 0 chr4 33533833 33533861 -168794486 + AT_rich Low_complexity Low_complexity 1 28 0 222 136 0 0 chr4 33533976 33534020 -168794327 + (CA)n Simple_repeat Simple_repeat 2 45 0 979 180 0 6 chr4 33534422 33534600 -168793747 - MER6A DNA MER2_type 0 605 429 252 0 0 0 chr4 33534607 33534635 -168793712 + (CA)n Simple_repeat Simple_repeat 2 29 0 1122 187 5 29 chr4 33534636 33534845 -168793502 - MER6A DNA MER2_type -385 220 17 1994 136 0 0 chr4 33534934 33535228 -168793119 + AluSg SINE Alu 1 294 -16 217 410 78 0 chr4 33535444 33535610 -168792737 + L2 LINE L2 2178 2356 -958 242 272 22 65 chr4 33537478 33537529 -168790818 + L2 LINE L2 3190 3237 -76 2077 122 0 7 chr4 33537529 33537823 -168790524 - AluSx SINE Alu -20 292 1 242 272 22 65 chr4 33537823 33537863 -168790484 + L2 LINE L2 3237 3277 -36 231 254 0 48 chr4 33538312 33538375 -168789972 - L3 LINE CR1 -4 1573 1514 2170 90 0 4 chr4 33538857 33539179 -168789168 + AluSc SINE Alu 1 321 0 198 349 84 42 chr4 33540195 33540361 -168787986 + MIR SINE MIR 3 175 -87 279 316 78 31 chr4 33541222 33541415 -168786932 - MIR SINE MIR -8 254 53 22 0 0 0 chr4 33543461 33543483 -168784864 + AT_rich Low_complexity Low_complexity 1 22 0 2184 87 0 10 chr4 33544714 33545012 -168783335 - AluY SINE Alu 0 311 17 4130 195 35 20 chr4 33545021 33546757 -168781590 - L1MA7 LINE L1 -154 6137 4372 242 192 68 14 chr4 33546765 33546838 -168781509 - L1MC4 LINE L1 -1328 6714 6638 200 224 40 13 chr4 33548077 33548153 -168780194 + (TA)n Simple_repeat Simple_repeat 2 79 0 2411 239 54 8 chr4 33548209 33548930 -168779417 - Charlie5 DNA MER1_type -1826 786 33 2244 24 0 0 chr4 33549130 33549384 -168778963 - AluY SINE Alu -8 303 50 2135 110 3 26 chr4 33550383 33550692 -168777655 + AluSx SINE Alu 3 304 -8 393 246 173 52 chr4 33550848 33550953 -168777394 + MER58C DNA MER1_type 2 93 -2327 243 0 0 0 chr4 33550953 33550980 -168777367 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 393 246 173 52 chr4 33550980 33551065 -168777282 + MER58C DNA MER1_type 93 215 0 25 65 0 0 chr4 33551169 33551215 -168777132 + AT_rich Low_complexity Low_complexity 1 46 0 334 232 62 45 chr4 33552353 33552465 -168775882 + MER58C DNA MER1_type 102 215 0 23 33 0 0 chr4 33553837 33553867 -168774480 + AT_rich Low_complexity Low_complexity 1 30 0 857 113 0 0 chr4 33553867 33553982 -168774365 - AluSc SINE Alu -23 286 172 193 340 191 14 chr4 33554104 33554245 -168774102 - MIR SINE MIR -79 183 18 797 266 204 16 chr4 33554323 33554691 -168773656 - LTR16B LTR ERVL -3 461 25 340 241 15 0 chr4 33555380 33555517 -168772830 + (TA)n Simple_repeat Simple_repeat 2 140 0 28 0 0 0 chr4 33555736 33555764 -168772583 + AT_rich Low_complexity Low_complexity 1 28 0 1695 152 32 0 chr4 33555764 33556073 -168772274 - L1MA5A LINE L1 -2 6295 5977 1560 283 36 29 chr4 33558470 33559018 -168769329 + L1MCb LINE L1 9 560 -5485 2138 214 39 81 chr4 33559142 33559264 -168769083 + L1MCb LINE L1 570 696 -5868 2245 145 107 5 chr4 33559264 33559658 -168768689 + MER61C LTR ERV1 1 434 0 2138 214 39 81 chr4 33559658 33559830 -168768517 + L1MCb LINE L1 696 874 -5690 2061 109 14 0 chr4 33559830 33560114 -168768233 + AluSx SINE Alu 21 308 -4 2138 214 39 81 chr4 33560114 33561039 -168767308 + L1MCb LINE L1 874 1757 -4807 * 4844 183 47 6 chr4 33561008 33562086 -168766261 + L1MA7 LINE L1 5577 6698 -11 1547 241 54 22 chr4 33562085 33562782 -168765565 + L1MCb LINE L1 2044 2617 -3947 * 5402 211 59 9 chr4 33562782 33562907 -168765440 + L1MC3 LINE L1 6298 6415 -1370 2165 107 3 31 chr4 33562907 33563226 -168765121 + AluSq SINE Alu 1 310 -3 5402 211 59 9 chr4 33563226 33564526 -168763821 + L1MC3 LINE L1 6415 7783 -2 1696 154 55 0 chr4 33564538 33564831 -168763516 + AluSx SINE Alu 1 309 -3 24 53 0 0 chr4 33564889 33564927 -168763420 + AT_rich Low_complexity Low_complexity 1 38 0 2657 166 18 28 chr4 33565149 33565758 -168762589 + pTR5 LTR ERV1 743 1345 -1093 3826 135 19 130 chr4 33565773 33566697 -168761650 + LTR12 LTR ERV1 5 826 0 1892 130 13 3 chr4 33566787 33567086 -168761261 - AluSc SINE Alu -7 302 1 326 157 0 119 chr4 33567089 33567207 -168761140 - MSTB LTR MaLR -330 98 3 24 0 0 0 chr4 33567249 33567273 -168761074 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr4 33568087 33568113 -168760234 + AT_rich Low_complexity Low_complexity 1 26 0 274 270 0 0 chr4 33568422 33568496 -168759851 + Charlie8 DNA MER1_type 71 144 -2273 2629 91 12 61 chr4 33568515 33568623 -168759724 + MER48 LTR ERV1 1 113 -274 2064 29 0 0 chr4 33568623 33568869 -168759478 + L1PA5 LINE L1 5909 6154 0 2629 91 12 61 chr4 33568869 33569167 -168759180 + MER48 LTR ERV1 113 387 0 36 23 0 0 chr4 33570584 33570627 -168757720 + AT_rich Low_complexity Low_complexity 1 43 0 312 379 21 21 chr4 33570980 33571120 -168757227 - L2 LINE L2 -5 3267 3128 428 232 96 57 chr4 33571187 33571364 -168756983 + MER63A DNA MER1_type 27 210 0 231 342 38 44 chr4 33571374 33571532 -168756815 - L2 LINE L2 -181 3091 2935 369 268 147 42 chr4 33573467 33573657 -168754690 - HAL1 LINE L1 -2 2505 2296 532 272 168 3 chr4 33573753 33574051 -168754296 - HAL1 LINE L1 -125 2382 2036 639 164 9 0 chr4 33574148 33574258 -168754089 - FLAM_A SINE Alu -20 122 12 757 222 76 0 chr4 33574327 33574525 -168753822 - HAL1 LINE L1 -726 1781 1569 21 0 0 0 chr4 33574819 33574840 -168753507 + AT_rich Low_complexity Low_complexity 1 21 0 3468 221 48 33 chr4 33575413 33576996 -168751351 - L1MB7 LINE L1 -6 6178 4564 1715 193 13 50 chr4 33576996 33577375 -168750972 + MLT1A1 LTR MaLR 1 365 0 3468 221 48 33 chr4 33577375 33577784 -168750563 - L1MB7 LINE L1 -1620 4564 4163 2881 127 16 2 chr4 33577805 33578255 -168750092 + Tigger4(Zombi) DNA MER2_type 2275 2730 -1 1392 263 113 60 chr4 33578356 33578571 -168749776 - L1MB7 LINE L1 -2085 4061 3859 378 0 0 0 chr4 33578571 33578613 -168749734 + (TG)n Simple_repeat Simple_repeat 2 43 0 1392 263 113 60 chr4 33578613 33579027 -168749320 - L1MB7 LINE L1 -2287 3859 3469 2159 164 33 28 chr4 33579027 33579453 -168748894 + MSTA LTR MaLR 1 428 0 1392 263 113 60 chr4 33579453 33579484 -168748863 - L1MB7 LINE L1 -2677 3469 3441 1543 146 20 20 chr4 33579484 33579730 -168748617 - AluSx SINE Alu -66 246 1 1392 263 113 60 chr4 33579730 33580022 -168748325 - L1MB7 LINE L1 -2705 3441 3056 1539 179 20 43 chr4 33580056 33580402 -168747945 + MER44D DNA MER2_type 1 608 -1 423 232 12 0 chr4 33580409 33580508 -168747839 - MIR SINE MIR -67 141 50 22 35 0 0 chr4 33581519 33581548 -168746799 + AT_rich Low_complexity Low_complexity 1 29 0 1649 112 12 0 chr4 33581777 33582036 -168746311 + L1MA5A LINE L1 6036 6297 0 1095 267 44 60 chr4 33582228 33582438 -168745909 - L2 LINE L2 -261 3052 2840 1499 176 52 144 chr4 33582438 33583036 -168745311 + MER67A LTR ERV1 1 543 0 1095 267 44 60 chr4 33583036 33583373 -168744974 - L2 LINE L2 -473 2840 2502 297 0 0 0 chr4 33584013 33584046 -168744301 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 268 386 0 0 chr4 33584389 33584490 -168743857 + MIR SINE MIR 46 146 -62 226 220 22 132 chr4 33584857 33584948 -168743399 - L2 LINE L2 -18 3254 3174 30 0 0 0 chr4 33585372 33585402 -168742945 + AT_rich Low_complexity Low_complexity 1 30 0 718 266 43 96 chr4 33585905 33586372 -168741975 + LTR16A1 LTR ERVL 16 457 0 194 341 0 12 chr4 33586844 33586929 -168741418 + L3 LINE CR1 919 1002 -575 211 292 69 0 chr4 33587043 33587115 -168741232 + L3 LINE CR1 1197 1273 -304 1504 213 155 12 chr4 33587227 33587473 -168740874 + MLT1D LTR MaLR 6 215 -290 2075 99 7 3 chr4 33587473 33587801 -168740546 + AluSp SINE Alu 1 329 0 1504 213 155 12 chr4 33587801 33587985 -168740362 + MLT1D LTR MaLR 215 499 -6 4119 99 9 3 chr4 33588070 33588654 -168739693 - LTR8 LTR ERV1 -104 587 1 8789 85 17 23 chr4 33588654 33589339 -168739008 - HUERS-P1 LTR ERV1 0 6263 5575 3564 115 0 6 chr4 33589339 33589853 -168738494 + MER9 LTR ERVK 1 511 0 8789 85 17 23 chr4 33589853 33591151 -168737196 - HUERS-P1 LTR ERV1 -688 5575 4138 * 18034 96 27 43 chr4 33591141 33593928 -168734419 - HUERS-P1 LTR ERV1 -3522 2741 1 1063 90 14 0 chr4 33593928 33594072 -168734275 - LTR8 LTR ERV1 0 691 546 526 255 90 55 chr4 33594210 33594647 -168733700 + MER113 DNA MER1_type? 37 521 0 334 343 99 22 chr4 33594647 33594828 -168733519 + MIR SINE MIR 9 203 -59 285 275 99 0 chr4 33594999 33595090 -168733257 + L2 LINE L2 3190 3289 -24 1196 203 12 111 chr4 33595144 33595549 -168732798 - MLT1A1 LTR MaLR 0 365 1 1200 251 10 7 chr4 33595786 33596077 -168732270 - MER58B DNA MER1_type 0 341 50 1778 238 33 6 chr4 33596082 33596600 -168731747 - L1PB4 LINE L1 -813 5333 4802 * 2616 139 9 7 chr4 33596597 33597027 -168731320 + L1PB4 LINE L1 5345 5775 -381 191 0 75 25 chr4 33597032 33597072 -168731275 + (TA)n Simple_repeat Simple_repeat 2 43 0 370 135 71 35 chr4 33597107 33597277 -168731070 + (TA)n Simple_repeat Simple_repeat 2 177 0 230 229 0 49 chr4 33597306 33597367 -168730980 - L1PB4 LINE L1 -195 5961 5904 266 214 14 14 chr4 33597367 33597437 -168730910 + (TA)n Simple_repeat Simple_repeat 2 71 0 246 32 0 0 chr4 33597437 33597468 -168730879 + (CA)n Simple_repeat Simple_repeat 2 32 0 2030 160 20 0 chr4 33597468 33597824 -168730523 + L1PB4 LINE L1 5794 6156 0 298 388 70 5 chr4 33597824 33598038 -168730309 + L2 LINE L2 3039 3266 -47 243 345 9 35 chr4 33598404 33598520 -168729827 - MIR SINE MIR -106 156 44 284 349 53 12 chr4 33599680 33599849 -168728498 - MIR SINE MIR -85 177 2 560 51 0 0 chr4 33600632 33600710 -168727637 + L1PA2 LINE L1 6078 6155 0 1717 157 110 28 chr4 33601665 33602029 -168726318 - L1PA16 LINE L1 -1 6165 5772 * 4034 103 32 2 chr4 33601998 33602590 -168725757 - THE1B-int LTR MaLR -970 610 1 2066 144 19 32 chr4 33602590 33602959 -168725388 - THE1B LTR MaLR 0 364 1 760 140 77 0 chr4 33602959 33603102 -168725245 + L1P4 LINE L1 5331 5484 -682 * 2177 132 0 0 chr4 33603097 33603408 -168724939 - THE1-int LTR MaLR -836 744 434 * 5824 113 22 14 chr4 33603395 33604256 -168724091 + THE1B-int LTR MaLR 713 1580 0 1897 113 107 27 chr4 33604263 33604600 -168723747 + THE1B LTR MaLR 1 364 0 3985 252 18 11 chr4 33604601 33605757 -168722590 - L1 LINE L1 -812 5334 4171 21 0 0 0 chr4 33607215 33607236 -168721111 + AT_rich Low_complexity Low_complexity 1 21 0 1562 219 34 11 chr4 33607292 33607649 -168720698 - MLT1A1 LTR MaLR 0 365 1 1833 186 20 9 chr4 33607704 33608048 -168720299 + MER7A DNA MER2_type 1 346 0 209 263 76 82 chr4 33608371 33608542 -168719805 + MIR SINE MIR 72 241 -21 396 322 51 23 chr4 33608687 33608901 -168719446 + MLT1I LTR MaLR 1 220 -189 336 289 18 9 chr4 33608937 33609051 -168719296 + MLT1I LTR MaLR 295 409 0 800 238 84 116 chr4 33610026 33610295 -168718052 + HsTC2a DNA Tc2 32 285 -1615 2163 120 3 3 chr4 33610295 33610604 -168717743 + AluSg SINE Alu 1 309 -1 800 238 84 116 chr4 33610604 33610738 -168717609 + HsTC2a DNA Tc2 285 422 -322 1259 107 48 21 chr4 33610782 33610969 -168717378 + AluSg SINE Alu 3 194 -116 574 266 67 39 chr4 33610994 33611276 -168717071 + HsTC2a DNA Tc2 452 741 -1 1703 148 4 14 chr4 33611594 33611871 -168716476 - AluSx SINE Alu -22 290 17 211 309 59 0 chr4 33611880 33611948 -168716399 - L2 LINE L2 0 3272 3201 336 285 23 15 chr4 33612032 33612162 -168716185 - MER94 DNA DNA 0 134 4 317 308 26 27 chr4 33612945 33613139 -168715208 + L1MCa LINE L1 65 175 -5870 4919 203 121 16 chr4 33613200 33614945 -168713402 + L1MC3 LINE L1 5219 7125 -660 22 99 0 0 chr4 33616121 33616192 -168712155 + AT_rich Low_complexity Low_complexity 1 71 0 25 0 0 0 chr4 33616236 33616261 -168712086 + AT_rich Low_complexity Low_complexity 1 25 0 1166 248 19 13 chr4 33616749 33617067 -168711280 + L1MD3 LINE L1 7674 7993 -2 23 54 0 0 chr4 33617399 33617436 -168710911 + AT_rich Low_complexity Low_complexity 1 37 0 22 94 0 0 chr4 33617623 33617687 -168710660 + AT_rich Low_complexity Low_complexity 1 64 0 3684 34 0 0 chr4 33617858 33618299 -168710048 - L1P LINE L1 -1045 5101 4661 1544 268 144 21 chr4 33618317 33618553 -168709794 + Charlie7 DNA MER1_type 1078 1283 -1329 2324 129 5 24 chr4 33618553 33618924 -168709423 - THE1B LTR MaLR 0 364 1 1544 268 144 21 chr4 33618924 33619608 -168708739 + Charlie7 DNA MER1_type 1283 2112 -500 3946 178 36 54 chr4 33619620 33619771 -168708576 + L1MB3 LINE L1 5181 5333 -850 1529 183 38 21 chr4 33619771 33620061 -168708286 + AluJo SINE Alu 1 295 -17 3946 178 36 54 chr4 33620061 33620923 -168707424 + L1MB3 LINE L1 5333 6182 -1 275 314 33 0 chr4 33620968 33621089 -168707258 + Charlie7 DNA MER1_type 2200 2324 -288 335 209 29 35 chr4 33621192 33621364 -168706983 + (TA)n Simple_repeat Simple_repeat 1 171 0 1479 210 47 3 chr4 33621649 33621992 -168706355 - MER46B DNA MER2_type -3 233 1 3028 307 89 38 chr4 33622090 33622506 -168705841 + L2 LINE L2 1264 1657 -1656 2129 92 0 0 chr4 33622506 33622789 -168705558 + AluY SINE Alu 21 303 -8 3028 307 89 38 chr4 33622789 33623565 -168704782 + L2 LINE L2 1657 2392 -921 2064 99 3 10 chr4 33623565 33623859 -168704488 + AluSc SINE Alu 1 292 -17 3028 307 89 38 chr4 33623859 33624564 -168703783 + L2 LINE L2 2392 3313 0 5063 78 0 3 chr4 33625711 33626382 -168701965 - L1PA7 LINE L1 -6 6148 5480 238 224 0 0 chr4 33627799 33627848 -168700499 + (TA)n Simple_repeat Simple_repeat 2 50 0 3129 70 27 27 chr4 33627943 33628340 -168700007 + MLT2A1 LTR ERVL 3 402 -42 216 0 0 0 chr4 33628340 33628364 -168699983 + (CA)n Simple_repeat Simple_repeat 2 25 0 3129 70 27 27 chr4 33628364 33628408 -168699939 + MLT2A1 LTR ERVL 401 444 0 42359 96 8 2 chr4 33628408 33634028 -168694319 + HERVL-A1 LTR ERVL 1 5654 0 2962 92 50 2 chr4 33634028 33634411 -168693936 + MLT2A1 LTR ERVL 1 407 -37 300 91 0 0 chr4 33634411 33634455 -168693892 + (TA)n Simple_repeat Simple_repeat 2 45 0 2962 92 50 2 chr4 33634455 33634495 -168693852 + MLT2A1 LTR ERVL 407 444 0 187 53 26 53 chr4 33634879 33634917 -168693430 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 3341 192 22 56 chr4 33636399 33637154 -168691193 - L1MB3 LINE L1 -120 6063 5336 1515 186 38 21 chr4 33637154 33637444 -168690903 - AluJo SINE Alu -17 295 1 3341 192 22 56 chr4 33637444 33637595 -168690752 - L1MB3 LINE L1 -847 5336 5181 1183 262 124 6 chr4 33637607 33638122 -168690225 - Charlie7 DNA MER1_type -500 2112 1537 638 297 59 24 chr4 33638237 33638291 -168690056 - Charlie7 DNA MER1_type -1235 1377 1326 2324 129 5 24 chr4 33638291 33638662 -168689685 + THE1B LTR MaLR 1 364 0 638 297 59 24 chr4 33638662 33638897 -168689450 - Charlie7 DNA MER1_type -1286 1326 1078 22 94 0 0 chr4 33639091 33639155 -168689192 + AT_rich Low_complexity Low_complexity 1 64 0 23 54 0 0 chr4 33639342 33639379 -168688968 + AT_rich Low_complexity Low_complexity 1 37 0 596 231 19 13 chr4 33639711 33639867 -168688480 - L1MD3 LINE L1 -2 7993 7837 200 226 19 19 chr4 33640000 33640106 -168688241 + GA-rich Low_complexity Low_complexity 4 109 0 836 142 0 0 chr4 33640416 33640536 -168687811 - Alu SINE Alu -191 120 1 198 0 0 0 chr4 33640706 33640728 -168687619 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 624 264 47 5 chr4 33640839 33641032 -168687315 - L1MB2 LINE L1 -2 6169 5969 3966 164 42 12 chr4 33641036 33641846 -168686501 - L1MA4 LINE L1 -4 6296 5463 659 283 113 25 chr4 33641847 33642356 -168685991 + LTR28 LTR ERV1 1 1303 -134 274 139 0 0 chr4 33642545 33642588 -168685759 - L1MA4 LINE L1 -835 5465 5423 3570 221 73 25 chr4 33643014 33644908 -168683439 - L1MC1 LINE L1 -313 6300 4314 1985 199 3 0 chr4 33644909 33645255 -168683092 + MER7A DNA MER2_type 2 346 0 361 244 46 35 chr4 33645255 33645434 -168682913 - L1MC1 LINE L1 -2111 4315 4136 318 70 0 0 chr4 33645435 33645478 -168682869 - L1PA7 LINE L1 -11 6143 6101 2369 200 67 20 chr4 33645488 33646380 -168681967 - L1MC1 LINE L1 -3654 2772 1837 29 47 0 0 chr4 33646388 33646431 -168681916 + AT_rich Low_complexity Low_complexity 1 43 0 5113 170 73 63 chr4 33646576 33647785 -168680562 - L1MC1 LINE L1 -5186 1240 20 21 57 0 0 chr4 33648113 33648148 -168680199 + AT_rich Low_complexity Low_complexity 1 35 0 1347 182 97 0 chr4 33649072 33649341 -168679006 - AluSx SINE Alu -17 295 1 59 53 0 0 chr4 33649590 33649684 -168678663 + AT_rich Low_complexity Low_complexity 1 94 0 275 379 26 13 chr4 33649940 33650093 -168678254 - MIR SINE MIR -86 176 22 240 35 0 0 chr4 33650523 33650552 -168677795 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 579 275 110 14 chr4 33650656 33650919 -168677428 - MLT1H LTR MaLR -219 330 1 904 275 16 12 chr4 33650977 33651228 -168677119 + MIR SINE MIR 1 252 -10 307 318 0 37 chr4 33651603 33651710 -168676637 - LTR16C LTR ERVL 0 491 389 1204 197 0 5 chr4 33652103 33652316 -168676031 - MLT1A1 LTR MaLR -2 363 152 2492 230 13 40 chr4 33652459 33653084 -168675263 + MLT1E2 LTR MaLR 19 626 0 223 214 0 18 chr4 33653409 33653465 -168674882 + A-rich Low_complexity Low_complexity 2 56 0 236 277 23 69 chr4 33653495 33653625 -168674722 - L2 LINE L2 -472 2842 2719 1151 256 35 19 chr4 33653797 33654158 -168674189 + L1ME2 LINE L1 5803 6330 -4 24 0 0 0 chr4 33654466 33654490 -168673857 + AT_rich Low_complexity Low_complexity 1 24 0 254 299 45 30 chr4 33654622 33654756 -168673591 - L1M4 LINE L1 -1905 4241 4106 275 316 38 38 chr4 33654900 33655033 -168673314 + MIR SINE MIR 68 200 -62 415 250 65 48 chr4 33655041 33655209 -168673138 + MLT1H LTR MaLR 1 171 -378 24 77 0 0 chr4 33655430 33655482 -168672865 + AT_rich Low_complexity Low_complexity 1 52 0 261 269 0 0 chr4 33655718 33655785 -168672562 + (TA)n Simple_repeat Simple_repeat 1 67 0 293 234 93 9 chr4 33655904 33656011 -168672336 + MER58 DNA MER1_type 21 136 -2284 338 349 43 29 chr4 33656097 33656306 -168672041 - HAL1b LINE L1 -747 601 390 1823 207 31 3 chr4 33656334 33656686 -168671661 + MLT2D LTR ERVL 1 362 -52 288 231 0 0 chr4 33656758 33656862 -168671485 + (TA)n Simple_repeat Simple_repeat 1 104 0 445 314 23 8 chr4 33656867 33657131 -168671216 - L1MEc LINE L1 -4883 1513 1246 1901 185 43 41 chr4 33657210 33657653 -168670694 - L1MB8 LINE L1 -13 6165 5722 2082 125 3 3 chr4 33658093 33658396 -168669951 + AluSx SINE Alu 1 303 -9 1144 126 0 24 chr4 33658396 33658563 -168669784 + AluSq SINE Alu 134 296 -17 661 265 0 0 chr4 33658962 33659109 -168669238 - FRAM SINE Alu -26 150 4 531 294 59 20 chr4 33659112 33659316 -168669031 + MLT1H LTR MaLR 71 282 -267 354 238 68 62 chr4 33659364 33659533 -168668814 + MLT1H LTR MaLR 371 547 -8 225 393 67 7 chr4 33660138 33660288 -168668059 - MIR3 SINE MIR -14 194 36 202 234 0 0 chr4 33660763 33660810 -168667537 + MIR SINE MIR 97 143 -119 1537 228 33 20 chr4 33660843 33661234 -168667113 - MSTD LTR MaLR 0 396 1 2641 280 49 28 chr4 33662256 33663321 -168665026 + L1MC3 LINE L1 8 1076 -4969 673 264 42 2 chr4 33663340 33663692 -168664655 + L1MC3 LINE L1 2504 2873 -3691 270 89 0 22 chr4 33663698 33663741 -168664606 + MLT1A1 LTR MaLR 63 104 -261 245 140 80 0 chr4 33663741 33663791 -168664556 - MLT2A2 LTR ERVL 0 453 400 263 648 0 0 chr4 33663798 33663977 -168664370 + (TA)n Simple_repeat Simple_repeat 2 180 0 268 122 0 0 chr4 33664001 33664042 -168664305 + MLT2D LTR ERVL 405 445 -8 237 33 0 0 chr4 33664042 33664072 -168664275 + (TC)n Simple_repeat Simple_repeat 2 31 0 225 139 0 0 chr4 33664072 33664115 -168664232 + (TA)n Simple_repeat Simple_repeat 2 44 0 271 261 15 0 chr4 33664253 33664318 -168664029 - AluJ/FRAM SINE Alu -12 290 225 * 2514 86 11 30 chr4 33664308 33664680 -168663667 - MLT2A1 LTR ERVL -79 365 1 1262 252 8 4 chr4 33664680 33664945 -168663402 + MLT1A1 LTR MaLR 100 365 0 5788 257 58 39 chr4 33664945 33668218 -168660129 + L1MC3 LINE L1 2958 5821 -743 1203 309 27 38 chr4 33668238 33668795 -168659552 + L1PA15-16 LINE L1 1 551 -6298 8182 248 55 42 chr4 33668984 33670588 -168657759 + L1M2 LINE L1 655 2237 -4611 1718 52 5 0 chr4 33670588 33670799 -168657548 + AluYa5 SINE Alu 1 212 -99 8182 248 55 42 chr4 33670799 33672080 -168656267 + L1M2 LINE L1 2237 3500 -3348 306 0 0 0 chr4 33672080 33672114 -168656233 + (CA)n Simple_repeat Simple_repeat 2 35 0 8182 248 55 42 chr4 33672114 33673489 -168654858 + L1M2 LINE L1 3500 5270 -1578 3461 230 45 43 chr4 33673478 33674536 -168653811 + L1MC3 LINE L1 6379 7438 -765 * 405 418 31 15 chr4 33674564 33675040 -168653307 + L1 LINE L1 1 484 -5797 1147 257 56 24 chr4 33675354 33675767 -168652580 + L1 LINE L1 1122 1547 -4734 5101 186 22 26 chr4 33675930 33677063 -168651284 + L1 LINE L1 3637 4765 -1585 12618 258 31 30 chr4 33677072 33682509 -168645838 + L1MA4 LINE L1 12 6003 -1735 5276 152 10 4 chr4 33682509 33684046 -168644301 + L1PA15 LINE L1 4611 6165 0 12618 258 31 30 chr4 33684046 33685778 -168642569 + L1MA4 LINE L1 6003 7732 -6 3429 204 19 18 chr4 33685770 33686100 -168642247 + L1MC3 LINE L1 6196 5937 -422 * 2289 41 0 34 chr4 33686100 33686418 -168641929 + AluY SINE Alu 1 308 0 3429 204 19 18 chr4 33686418 33686842 -168641505 + L1MC3 LINE L1 5936 6358 -1 598 304 78 0 chr4 33686876 33687106 -168641241 - MIR SINE MIR -1 261 14 1299 130 14 5 chr4 33687633 33687849 -168640498 - L1MA4A LINE L1 0 6303 6086 289 143 0 0 chr4 33687852 33687901 -168640446 + L1MA4A LINE L1 6039 6087 -216 2020 99 4 15 chr4 33688574 33688846 -168639501 - AluSx SINE Alu -23 289 21 31 68 0 0 chr4 33688846 33688905 -168639442 + AT_rich Low_complexity Low_complexity 1 59 0 195 184 0 0 chr4 33688973 33689011 -168639336 + CT-rich Low_complexity Low_complexity 2 39 0 2025 128 0 0 chr4 33690146 33690442 -168637905 - AluSg1 SINE Alu -13 296 1 21 82 0 0 chr4 33690722 33690771 -168637576 + AT_rich Low_complexity Low_complexity 1 49 0 353 276 31 49 chr4 33693055 33693218 -168635129 + L2 LINE L2 3149 3308 -5 327 292 84 32 chr4 33694076 33694230 -168634117 - MIR SINE MIR -1 261 100 * 631 301 45 29 chr4 33694225 33694471 -168633876 - MIR SINE MIR 0 262 13 543 292 107 23 chr4 33694512 33694728 -168633619 + MIR SINE MIR 29 262 0 1606 221 43 2 chr4 33695706 33696100 -168632247 - L1PA16 LINE L1 -861 5285 4876 4955 149 29 5 chr4 33696100 33696952 -168631395 + L1PA16 LINE L1 5283 6155 -11 2108 116 0 3 chr4 33698324 33698617 -168629730 + AluSq SINE Alu 5 296 -17 31 0 0 0 chr4 33698620 33698651 -168629696 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr4 33698707 33698733 -168629614 + AT_rich Low_complexity Low_complexity 1 26 0 1039 214 29 0 chr4 33698780 33698986 -168629361 - MER58A DNA MER1_type -12 212 1 1278 137 5 15 chr4 33700620 33700825 -168627522 + AluSx SINE Alu 5 207 -105 711 220 47 0 chr4 33700881 33701031 -168627316 - FRAM SINE Alu -27 149 1 368 289 40 112 chr4 33701516 33701588 -168626759 - MIR SINE MIR -1 261 185 1407 279 98 28 chr4 33701588 33702197 -168626150 + MLT1E1 LTR MaLR 3 654 0 368 289 40 112 chr4 33702197 33702401 -168625946 - MIR SINE MIR -77 185 5 346 361 47 12 chr4 33702409 33702578 -168625769 - MIR SINE MIR -70 192 18 23 0 0 0 chr4 33703098 33703121 -168625226 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr4 33705750 33705785 -168622562 + AT_rich Low_complexity Low_complexity 1 35 0 736 297 92 60 chr4 33705797 33706003 -168622344 - L2 LINE L2 -7 3306 3108 369 0 0 0 chr4 33706003 33706044 -168622303 + (TA)n Simple_repeat Simple_repeat 2 42 0 736 297 92 60 chr4 33706044 33706291 -168622056 - L2 LINE L2 -205 3108 2838 211 244 50 92 chr4 33706380 33706438 -168621909 - MIR SINE MIR -74 188 136 710 235 105 10 chr4 33706438 33706638 -168621709 - MER20 DNA MER1_type 0 219 1 211 244 50 92 chr4 33706638 33706698 -168621649 - MIR SINE MIR -126 136 75 2170 83 17 3 chr4 33707036 33707338 -168621009 - L1P4 LINE L1 -493 5673 5368 2155 130 49 47 chr4 33707342 33707749 -168620598 + L1PA16 LINE L1 5750 6157 -9 1944 144 3 3 chr4 33709006 33709311 -168619036 - AluSq SINE Alu 0 305 1 1773 194 5 22 chr4 33710704 33711075 -168617272 + MLT1A1 LTR MaLR 1 365 0 1189 240 50 36 chr4 33711409 33711793 -168616554 + MLT1B LTR MaLR 1 389 -1 195 376 43 0 chr4 33711894 33711987 -168616360 + MIR3 SINE MIR 81 177 -31 872 251 106 52 chr4 33712136 33712579 -168615768 - MLT1C LTR MaLR 0 467 1 23 0 0 0 chr4 33712745 33712768 -168615579 + AT_rich Low_complexity Low_complexity 1 23 0 2439 180 4 51 chr4 33713249 33713743 -168614604 + Tigger3b DNA MER2_type 2 472 -759 604 82 63 6 chr4 33713771 33713929 -168614418 + (TA)n Simple_repeat Simple_repeat 2 168 0 3224 169 88 9 chr4 33713957 33714642 -168613705 + Tigger3b DNA MER2_type 493 1231 0 21 71 0 0 chr4 33714914 33714956 -168613391 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr4 33715035 33715066 -168613281 + AT_rich Low_complexity Low_complexity 1 31 0 1020 230 50 76 chr4 33715418 33715800 -168612547 - MLT1B LTR MaLR -2 386 1 1947 147 7 3 chr4 33715993 33716300 -168612047 + AluSx SINE Alu 3 310 -2 182 306 71 24 chr4 33716491 33716576 -168611771 + MIR SINE MIR 92 180 -82 2187 98 0 0 chr4 33716965 33717260 -168611087 + AluSc SINE Alu 1 295 -14 186 43 0 0 chr4 33717611 33717634 -168610713 + (TA)n Simple_repeat Simple_repeat 1 23 0 489 115 26 0 chr4 33718077 33718155 -168610192 + MADE1 DNA Mariner 1 80 0 251 399 21 7 chr4 33718280 33718423 -168609924 - MIR SINE MIR -105 157 13 464 277 28 23 chr4 33720177 33720354 -168607993 - MER5B DNA MER1_type 0 178 1 193 282 81 60 chr4 33720554 33720703 -168607644 + L2 LINE L2 3147 3298 -15 23 0 0 0 chr4 33721235 33721258 -168607089 + AT_rich Low_complexity Low_complexity 1 23 0 269 326 58 77 chr4 33721340 33721601 -168606746 - MIR SINE MIR -2 260 5 2145 168 33 2 chr4 33721655 33722053 -168606294 - MSTB LTR MaLR -2 424 15 541 236 220 16 chr4 33722584 33722766 -168605581 + MER20 DNA MER1_type 1 219 0 996 158 18 0 chr4 33723812 33724156 -168604191 - AluSx SINE Alu 0 490 144 947 114 23 0 chr4 33724209 33724340 -168604007 - AluSx SINE Alu -176 137 4 335 296 179 25 chr4 33724587 33724783 -168603564 - L1ME LINE L1 -296 5825 5600 25 75 0 0 chr4 33724998 33725051 -168603296 + AT_rich Low_complexity Low_complexity 1 53 0 295 345 144 40 chr4 33725107 33725461 -168602886 - L2 LINE L2 0 3313 2923 766 231 9 38 chr4 33726193 33726405 -168601942 + MER63A DNA MER1_type 4 209 -1 27 29 0 0 chr4 33727302 33727336 -168601011 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr4 33727525 33727547 -168600800 + AT_rich Low_complexity Low_complexity 1 22 0 436 178 11 33 chr4 33727926 33728016 -168600331 - Charlie1 DNA MER1_type -1253 1508 1421 300 329 0 0 chr4 33728024 33728100 -168600247 - Charlie1 DNA MER1_type -2683 78 3 993 321 46 32 chr4 33728102 33728608 -168599739 + L2 LINE L2 2793 3304 -9 335 263 34 76 chr4 33728639 33728721 -168599626 - HAL1 LINE L1 -1493 1014 930 1989 127 3 0 chr4 33728721 33729034 -168599313 - AluSx SINE Alu 0 314 1 335 263 34 76 chr4 33729034 33729212 -168599135 - HAL1 LINE L1 -1577 930 764 1765 174 30 66 chr4 33729301 33729837 -168598510 + MLT2A2 LTR ERVL 1 418 -35 2055 110 10 0 chr4 33729837 33730127 -168598220 - AluY SINE Alu -18 293 1 1765 174 30 66 chr4 33730127 33730162 -168598185 + MLT2A2 LTR ERVL 418 453 0 885 252 32 9 chr4 33730266 33730484 -168597863 + MER58A DNA MER1_type 1 223 -1 26 50 0 0 chr4 33730982 33731022 -168597325 + AT_rich Low_complexity Low_complexity 1 40 0 27 81 0 0 chr4 33731410 33731472 -168596875 + AT_rich Low_complexity Low_complexity 1 62 0 548 231 22 8 chr4 33731515 33731649 -168596698 + MLT1D LTR MaLR 3 138 -367 357 343 70 0 chr4 33731746 33731918 -168596429 + L1ME3A LINE L1 5147 5330 -816 1301 320 60 17 chr4 33731987 33732303 -168596044 + L1ME3A LINE L1 5432 5733 -437 333 0 0 0 chr4 33732303 33732340 -168596007 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1301 320 60 17 chr4 33732340 33732727 -168595620 + L1ME3A LINE L1 5733 6165 -5 1161 193 24 60 chr4 33733483 33733921 -168594426 - MLT1D LTR MaLR 0 505 1 1907 184 33 32 chr4 33734394 33734945 -168593402 - MLT2A2 LTR ERVL 0 554 3 1004 205 56 14 chr4 33734989 33735283 -168593064 + LTR24B LTR ERV1 231 467 0 789 304 26 11 chr4 33735283 33735549 -168592798 + LTR24B-int LTR ERV1 1 270 -4853 792 322 54 37 chr4 33737836 33738264 -168590083 + MER84-int LTR ERV1 149 583 -4064 352 323 42 39 chr4 33738826 33739157 -168589190 + MER84-int LTR ERV1 3314 3645 -3156 310 336 18 27 chr4 33739186 33739409 -168588938 + MER84-int LTR ERV1 4718 4938 -3797 1692 173 4 0 chr4 33740878 33741155 -168587192 + AluSx SINE Alu 30 307 -5 337 258 96 22 chr4 33742085 33742263 -168586084 + MER84-int LTR ERV1 4265 4455 -499 892 238 47 55 chr4 33742781 33743166 -168585181 + LTR24B LTR ERV1 188 467 0 1951 223 101 94 chr4 33743537 33744531 -168583816 - MER4-int LTR ERV1 -1006 5592 2522 273 276 32 73 chr4 33744534 33744657 -168583690 - MER52A LTR ERV1 -4 1751 1634 954 270 94 97 chr4 33744678 33745489 -168582858 - MER52A LTR ERV1 -296 1459 652 930 185 51 65 chr4 33745490 33745571 -168582776 - MER4-int LTR ERV1 -2224 4021 3940 198 0 0 0 chr4 33745571 33745593 -168582754 + (CAA)n Simple_repeat Simple_repeat 2 23 0 930 185 51 65 chr4 33745593 33745850 -168582497 - MER4-int LTR ERV1 -2305 3940 2477 317 225 0 56 chr4 33745922 33746011 -168582336 - MER4-int LTR ERV1 -2868 3730 3647 323 275 42 97 chr4 33746112 33746443 -168581904 - MER4-int LTR ERV1 -2572 2551 2239 * 367 204 132 24 chr4 33746436 33746603 -168581744 - MER4-int LTR ERV1 -6377 1743 1559 507 128 20 39 chr4 33746700 33746802 -168581545 + L1MA3 LINE L1 6206 6305 0 467 263 32 5 chr4 33746805 33746991 -168581356 - MER4-int LTR ERV1 -6590 1530 1340 1000 253 45 86 chr4 33747050 33747632 -168580715 - MER4-int LTR ERV1 -2751 2120 1563 736 235 137 35 chr4 33747653 33747938 -168580409 - MER34 LTR ERV1 -195 347 34 315 236 8 126 chr4 33748235 33748362 -168579985 - MER4-int LTR ERV1 -4048 823 712 548 240 31 106 chr4 33748484 33748738 -168579609 - MER4-int LTR ERV1 -4583 288 54 209 264 45 32 chr4 33749275 33749430 -168578917 + (TATATG)n Simple_repeat Simple_repeat 4 160 0 219 266 0 0 chr4 33750788 33750852 -168577495 + CT-rich Low_complexity Low_complexity 4 67 0 1762 171 4 4 chr4 33751020 33751330 -168577017 - AluJb SINE Alu 0 310 1 314 164 0 14 chr4 33751791 33751846 -168576501 + CT-rich Low_complexity Low_complexity 1 56 -16 225 0 0 0 chr4 33751846 33751871 -168576476 + (CA)n Simple_repeat Simple_repeat 1 25 0 314 164 0 14 chr4 33751871 33751888 -168576459 + CT-rich Low_complexity Low_complexity 56 72 0 1230 85 11 17 chr4 33753233 33753410 -168574937 + AluY SINE Alu 136 311 0 236 294 0 24 chr4 33753523 33753608 -168574739 + L1MEc LINE L1 176 258 -6138 217 211 0 0 chr4 33753738 33753776 -168574571 - L3 LINE CR1 -156 1421 1384 2370 50 3 10 chr4 33753961 33754260 -168574087 + AluY SINE Alu 1 297 -14 250 316 95 30 chr4 33754531 33754699 -168573648 - L2 LINE L2 -2 3311 3133 288 308 0 0 chr4 33755090 33755168 -168573179 + CT-rich Low_complexity Low_complexity 2 79 0 268 350 21 21 chr4 33755174 33755317 -168573030 - MIR SINE MIR -71 191 49 1175 216 66 69 chr4 33756553 33756932 -168571415 + MLT1B LTR MaLR 1 378 -12 316 319 78 21 chr4 33757378 33757569 -168570778 + MIR SINE MIR 54 255 -7 285 376 56 11 chr4 33758047 33758225 -168570122 - MIR SINE MIR -57 205 20 24 67 0 0 chr4 33758458 33758503 -168569844 + AT_rich Low_complexity Low_complexity 1 45 0 308 98 0 0 chr4 33759132 33759173 -168569174 - MER53 DNA DNA 0 189 149 1600 188 25 53 chr4 33759189 33759588 -168568759 + MLT1B LTR MaLR 3 390 0 2127 123 0 0 chr4 33759829 33760122 -168568225 + AluSg SINE Alu 1 293 -17 333 280 34 0 chr4 33760334 33760452 -168567895 - L1ME4a LINE L1 -1 6120 5999 5987 99 6 1 chr4 33760493 33761339 -168567008 - L1PA8A LINE L1 -28 6103 5254 216 320 49 41 chr4 33761688 33761810 -168566537 + L2 LINE L2 3145 3267 -5 478 342 121 0 chr4 33762140 33762479 -168565868 + HsTC2 DNA Tc2 485 864 -1034 26 0 0 0 chr4 33762664 33762690 -168565657 + AT_rich Low_complexity Low_complexity 1 26 0 1682 186 3 0 chr4 33762711 33763006 -168565341 + AluJo SINE Alu 15 310 -2 333 68 0 0 chr4 33763015 33763059 -168565288 + (GGAA)n Simple_repeat Simple_repeat 4 47 0 186 291 36 0 chr4 33763118 33763173 -168565174 + MIR SINE MIR 74 130 -78 297 336 68 29 chr4 33763491 33763710 -168564637 - L1ME4a LINE L1 -224 5897 5654 2057 109 3 0 chr4 33763710 33764021 -168564326 - AluSp SINE Alu 0 312 1 297 336 68 29 chr4 33764021 33764184 -168564163 - L1ME4a LINE L1 -467 5654 5499 192 301 126 55 chr4 33764337 33764520 -168563827 + L2 LINE L2 2155 2350 -964 203 130 0 43 chr4 33764878 33764924 -168563423 + (TAAAAA)n Simple_repeat Simple_repeat 4 47 0 22 35 0 0 chr4 33764941 33764970 -168563377 + AT_rich Low_complexity Low_complexity 1 29 0 383 75 0 252 chr4 33765649 33765756 -168562591 - MADE1 DNA Mariner 0 80 1 26 0 0 0 chr4 33766647 33766673 -168561674 + AT_rich Low_complexity Low_complexity 1 26 0 3318 211 65 9 chr4 33767037 33767904 -168560443 + L1MB8 LINE L1 5256 6170 -8 25 0 0 0 chr4 33768438 33768463 -168559884 + AT_rich Low_complexity Low_complexity 1 25 0 24 96 0 0 chr4 33768998 33769071 -168559276 + AT_rich Low_complexity Low_complexity 1 73 0 520 330 87 42 chr4 33769181 33769584 -168558763 - HAL1 LINE L1 -868 1639 1219 332 317 81 34 chr4 33771587 33772057 -168556290 - L1ME3A LINE L1 -306 5864 5373 205 222 19 0 chr4 33772086 33772140 -168556207 + T-rich Low_complexity Low_complexity 4 58 0 22 56 0 0 chr4 33773230 33773266 -168555081 + AT_rich Low_complexity Low_complexity 1 36 0 258 32 0 0 chr4 33774340 33774371 -168553976 + (TG)n Simple_repeat Simple_repeat 1 31 0 183 42 0 0 chr4 33775158 33775182 -168553165 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 463 303 13 7 chr4 33776121 33776276 -168552071 - MLT1I LTR MaLR -253 156 1 1547 205 45 22 chr4 33776304 33776588 -168551759 + MLT1A1 LTR MaLR 1 296 -69 2202 116 7 0 chr4 33776588 33776898 -168551449 - AluSx SINE Alu 0 312 1 1547 205 45 22 chr4 33776898 33776969 -168551378 + MLT1A1 LTR MaLR 296 364 -1 1635 186 9 15 chr4 33777167 33777506 -168550841 + MER1B DNA MER1_type 1 337 0 874 304 80 26 chr4 33778661 33779049 -168549298 - MLT1I LTR MaLR 0 409 1 26 74 0 0 chr4 33780289 33780343 -168548004 + AT_rich Low_complexity Low_complexity 1 54 0 842 216 2 6 chr4 33780345 33780529 -168547818 + MER58B DNA MER1_type 37 340 -1 22 0 0 0 chr4 33780551 33780573 -168547774 + AT_rich Low_complexity Low_complexity 1 22 0 34 65 0 0 chr4 33780672 33780734 -168547613 + AT_rich Low_complexity Low_complexity 1 62 0 328 305 67 43 chr4 33780998 33781162 -168547185 + MIR SINE MIR 1 168 -94 282 29 0 0 chr4 33782400 33782435 -168545912 + (TG)n Simple_repeat Simple_repeat 1 35 0 1004 209 115 69 chr4 33782571 33782920 -168545427 - MLT1A1 LTR MaLR 0 365 1 2423 230 25 68 chr4 33782996 33783688 -168544659 + LTR8 LTR ERV1 30 691 0 301 301 28 75 chr4 33784409 33784595 -168543752 - MIR SINE MIR -14 248 73 1495 167 57 18 chr4 33785356 33785692 -168542655 + L1PA16 LINE L1 5816 6164 -2 32 26 0 0 chr4 33785710 33785749 -168542598 + AT_rich Low_complexity Low_complexity 1 39 0 222 315 0 0 chr4 33786352 33786406 -168541941 - MIR SINE MIR -182 80 27 23 0 0 0 chr4 33786710 33786733 -168541614 + AT_rich Low_complexity Low_complexity 1 23 0 32 31 0 46 chr4 33787099 33787164 -168541183 + AT_rich Low_complexity Low_complexity 1 62 0 2267 88 0 52 chr4 33787818 33788146 -168540201 - AluY SINE Alu 0 311 1 191 325 52 0 chr4 33788431 33788508 -168539839 + MIR SINE MIR 80 160 -102 198 143 0 0 chr4 33789335 33789370 -168538977 + (TC)n Simple_repeat Simple_repeat 2 36 0 237 288 90 27 chr4 33792114 33792225 -168536122 + L2 LINE L2 3196 3313 0 1540 84 5 0 chr4 33794034 33794249 -168534098 - L1PA8 LINE L1 0 6172 5957 613 335 37 0 chr4 33796156 33796347 -168532000 + MIR SINE MIR 1 198 -64 1366 186 28 0 chr4 33796370 33796617 -168531730 + AluJb SINE Alu 29 282 -30 1505 256 55 21 chr4 33796666 33797100 -168531247 + MLT1F1 LTR MaLR 5 453 -114 405 0 0 0 chr4 33797253 33797298 -168531049 + (CA)n Simple_repeat Simple_repeat 2 46 0 2276 251 26 4 chr4 33797298 33797836 -168530511 - MER89 LTR ERV1 -9 550 1 238 237 85 0 chr4 33798681 33798740 -168529607 - L2 LINE L2 0 3313 3250 204 403 67 20 chr4 33800217 33800366 -168527981 + L2 LINE L2 3117 3272 0 261 0 0 0 chr4 33800678 33800707 -168527640 + (T)n Simple_repeat Simple_repeat 1 29 0 1953 153 138 13 chr4 33800886 33801278 -168527069 - L1MA3 LINE L1 0 6305 5865 2656 29 0 3 chr4 33801369 33801680 -168526667 - AluYb8 SINE Alu -8 310 1 185 0 40 0 chr4 33801766 33801791 -168526556 + (CA)n Simple_repeat Simple_repeat 2 27 0 2683 42 6 0 chr4 33801841 33802174 -168526173 + L1PA4 LINE L1 5821 6155 0 183 100 0 0 chr4 33802229 33802259 -168526088 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 189 0 0 0 chr4 33802317 33802338 -168526009 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 208 347 20 0 chr4 33802537 33802635 -168525712 - L2 LINE L2 -1216 2098 1999 1802 126 53 0 chr4 33802892 33803193 -168525154 - L1PA13 LINE L1 -1 6162 5846 1781 148 21 3 chr4 33805198 33805489 -168522858 + AluSx SINE Alu 1 296 -16 227 53 0 26 chr4 33806926 33806964 -168521383 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 203 184 20 0 chr4 33806982 33807031 -168521316 + (TG)n Simple_repeat Simple_repeat 1 50 0 235 329 14 0 chr4 33807035 33807105 -168521242 + MIR SINE MIR 59 129 -133 206 290 30 50 chr4 33807211 33807311 -168521036 - MIR SINE MIR -66 142 45 259 367 19 60 chr4 33807343 33807558 -168520789 - L2 LINE L2 -478 2836 2631 375 88 0 29 chr4 33808856 33808924 -168519423 - L1PA15 LINE L1 -7 6158 6093 21 36 0 0 chr4 33809902 33809930 -168518417 + AT_rich Low_complexity Low_complexity 1 28 0 2225 107 0 3 chr4 33810071 33810379 -168517968 - AluSg SINE Alu -3 307 1 969 251 0 9 chr4 33810771 33810994 -168517353 - MER58A DNA MER1_type 0 224 4 226 350 21 7 chr4 33811894 33812034 -168516313 - L2 LINE L2 -957 2357 2216 21 36 0 0 chr4 33813220 33813248 -168515099 + AT_rich Low_complexity Low_complexity 1 28 0 1265 253 94 25 chr4 33813414 33813944 -168514403 - MLT1E2 LTR MaLR 0 626 90 340 258 73 24 chr4 33813982 33814106 -168514241 + MIR SINE MIR 25 154 -108 1634 39 0 0 chr4 33814921 33815127 -168513220 - L1PA5 LINE L1 -1606 4540 4335 7228 41 3 3 chr4 33815132 33816742 -168511605 + L1PA5 LINE L1 4542 6151 -3 329 326 69 50 chr4 33820053 33820314 -168508033 - L1M4 LINE L1 -1313 4833 4568 356 319 108 54 chr4 33820455 33821577 -168506770 - L1M4 LINE L1 -2368 3778 2570 215 247 222 12 chr4 33821680 33821761 -168506586 + L2 LINE L2 2414 2511 -803 663 287 93 0 chr4 33821882 33822098 -168506249 - L2 LINE L2 -671 2643 2408 337 313 6 30 chr4 33822535 33822701 -168505646 - L1MC4a LINE L1 -1878 5930 5769 307 228 65 11 chr4 33822777 33822869 -168505478 - L1M4 LINE L1 -3859 2287 2191 3324 187 18 0 chr4 33822911 33823511 -168504836 + Tigger1 DNA MER2_type 1 611 -1807 * 9686 126 19 37 chr4 33823479 33823709 -168504638 + Tigger1 DNA MER2_type 796 1029 -1389 1920 112 38 0 chr4 33823709 33823999 -168504348 + AluSp SINE Alu 9 308 0 9686 126 19 37 chr4 33823999 33825420 -168502927 + Tigger1 DNA MER2_type 1029 2418 0 869 235 26 33 chr4 33825999 33826305 -168502042 + LTR37A LTR ERV1 55 358 -68 2646 207 74 16 chr4 33826305 33826445 -168501902 - L1MA9 LINE L1 -4 6308 6177 345 47 0 0 chr4 33826445 33826488 -168501859 + (TG)n Simple_repeat Simple_repeat 2 44 0 2646 207 74 16 chr4 33826488 33827013 -168501334 - L1MA9 LINE L1 -135 6177 5605 243 320 0 27 chr4 33827479 33827554 -168500793 - MIR SINE MIR -142 120 48 22 0 0 0 chr4 33827565 33827587 -168500760 + AT_rich Low_complexity Low_complexity 1 22 0 200 288 0 0 chr4 33828891 33828957 -168499390 + T-rich Low_complexity Low_complexity 1 66 0 22 0 0 0 chr4 33829587 33829609 -168498738 + AT_rich Low_complexity Low_complexity 1 22 0 591 13 27 0 chr4 33829889 33829964 -168498383 - L1PA4 LINE L1 -2 6153 6077 3523 155 41 36 chr4 33831900 33832681 -168495666 + LTR1 LTR ERV1 1 785 0 466 239 92 54 chr4 33832694 33832878 -168495469 + MIR SINE MIR 72 262 0 1896 168 0 0 chr4 33833522 33833832 -168494515 + AluSx SINE Alu 1 310 -2 2213 119 27 3 chr4 33834500 33834836 -168493511 - THE1A LTR MaLR 0 355 12 11227 97 9 15 chr4 33834836 33836416 -168491931 - THE1A-int LTR MaLR -9 1571 1 1460 135 9 0 chr4 33836416 33836645 -168491702 - THE1A LTR MaLR 0 355 125 768 119 24 24 chr4 33836762 33836888 -168491459 - THE1A LTR MaLR -249 126 1 315 0 0 0 chr4 33837477 33837512 -168490835 + (CA)n Simple_repeat Simple_repeat 2 36 0 390 260 65 55 chr4 33837574 33837774 -168490573 + L2 LINE L2 3112 3313 0 232 300 14 0 chr4 33837776 33837846 -168490501 + MIR SINE MIR 171 241 -21 189 313 109 0 chr4 33839684 33839748 -168488599 + L2 LINE L2 3202 3272 0 291 373 46 14 chr4 33839995 33840212 -168488135 - MIR SINE MIR -28 234 11 240 277 53 21 chr4 33840658 33840752 -168487595 + L2 LINE L2 2158 2254 -1060 471 290 39 120 chr4 33841013 33841347 -168487000 + MLT1J LTR MaLR 37 343 -168 427 321 37 23 chr4 33841359 33841574 -168486773 + L2 LINE L2 3088 3305 -8 21 71 0 0 chr4 33842503 33842545 -168485802 + AT_rich Low_complexity Low_complexity 1 42 0 235 338 31 59 chr4 33842853 33843075 -168485272 - L2 LINE L2 0 3313 3098 1924 154 39 20 chr4 33843076 33843432 -168484915 + THE1C LTR MaLR 13 375 0 438 261 64 25 chr4 33843438 33843595 -168484752 - L2 LINE L2 -278 3035 2873 327 232 27 18 chr4 33844962 33845074 -168483273 + L1MC/D LINE L1 4532 4644 -1502 1441 221 0 0 chr4 33845102 33845373 -168482974 - MLT2C1 LTR ERVL -126 271 1 26 30 0 0 chr4 33845671 33845704 -168482643 + AT_rich Low_complexity Low_complexity 1 33 0 245 271 80 33 chr4 33846739 33846890 -168481457 + L1MC/D LINE L1 5595 5752 -2056 758 244 176 0 chr4 33847087 33847325 -168481022 + L1M4 LINE L1 4562 4841 -1305 182 175 0 18 chr4 33847349 33847406 -168480941 + (TTAA)n Simple_repeat Simple_repeat 3 58 0 468 256 56 0 chr4 33847407 33847532 -168480815 + L1M4 LINE L1 4847 4978 -1168 24 0 0 0 chr4 33847702 33847726 -168480621 + AT_rich Low_complexity Low_complexity 1 24 0 198 370 49 25 chr4 33849290 33849533 -168478814 + L2 LINE L2 1129 1377 -1937 430 333 44 15 chr4 33849539 33849743 -168478604 - MIR SINE MIR -3 259 50 1765 135 97 26 chr4 33849920 33850260 -168478087 + THE1B LTR MaLR 1 364 0 299 326 157 30 chr4 33850318 33850379 -168477968 + L2 LINE L2 1610 1662 -1652 186 103 0 0 chr4 33850379 33850408 -168477939 + (TAA)n Simple_repeat Simple_repeat 2 30 0 299 326 157 30 chr4 33850408 33850672 -168477675 + L2 LINE L2 1662 1996 -1318 993 257 85 101 chr4 33850672 33851275 -168477072 - MLT1E LTR MaLR 0 593 1 299 326 157 30 chr4 33851275 33851344 -168477003 + L2 LINE L2 1996 2055 -1259 280 305 73 49 chr4 33851427 33851591 -168476756 + L2 LINE L2 2214 2381 -933 250 279 25 51 chr4 33852133 33852212 -168476135 + L2 LINE L2 2932 3008 -264 204 158 0 0 chr4 33852889 33852927 -168475420 + (TA)n Simple_repeat Simple_repeat 2 39 0 214 182 78 0 chr4 33852995 33853072 -168475275 + (TA)n Simple_repeat Simple_repeat 1 83 0 21 0 0 0 chr4 33853172 33853193 -168475154 + AT_rich Low_complexity Low_complexity 1 21 0 973 219 15 5 chr4 33853479 33853684 -168474663 + MER3 DNA MER1_type 1 207 -2 863 253 20 0 chr4 33853900 33854098 -168474249 + MER58A DNA MER1_type 20 221 -3 201 349 16 32 chr4 33854181 33854307 -168474040 - L2 LINE L2 -182 3090 2967 191 189 19 0 chr4 33854377 33854430 -168473917 + (TA)n Simple_repeat Simple_repeat 2 55 0 40 42 0 14 chr4 33854559 33854606 -168473741 + AT_rich Low_complexity Low_complexity 1 48 -23 215 39 19 58 chr4 33854606 33854658 -168473689 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 40 42 0 14 chr4 33854658 33854682 -168473665 + AT_rich Low_complexity Low_complexity 48 71 0 24 0 0 0 chr4 33855103 33855127 -168473220 + AT_rich Low_complexity Low_complexity 1 24 0 397 264 16 16 chr4 33856953 33857078 -168471269 - MER103 DNA DNA -39 127 3 426 20 0 0 chr4 33857513 33857564 -168470783 + (TG)n Simple_repeat Simple_repeat 2 52 0 201 302 168 47 chr4 33858408 33858557 -168469790 + MIR SINE MIR 35 201 -61 1049 183 0 0 chr4 33858673 33858853 -168469494 - L1PB4 LINE L1 -13 6143 5964 200 189 0 0 chr4 33858867 33858904 -168469443 + CT-rich Low_complexity Low_complexity 4 40 0 25 31 0 0 chr4 33858941 33858973 -168469374 + AT_rich Low_complexity Low_complexity 1 32 0 2253 53 3 23 chr4 33860134 33860435 -168467912 + AluY SINE Alu 1 295 -16 22 35 0 0 chr4 33861453 33861482 -168466865 + AT_rich Low_complexity Low_complexity 1 29 0 218 28 0 56 chr4 33862460 33862496 -168465851 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 1902 131 0 81 chr4 33862789 33863124 -168465223 + AluSx SINE Alu 2 309 -3 2096 147 11 22 chr4 33863138 33863506 -168464841 + THE1B LTR MaLR 1 364 0 21 57 0 0 chr4 33863728 33863763 -168464584 + AT_rich Low_complexity Low_complexity 1 35 0 231 189 0 0 chr4 33863844 33863897 -168464450 + (TA)n Simple_repeat Simple_repeat 2 54 0 2036 108 10 7 chr4 33864263 33864558 -168463789 + AluSq SINE Alu 1 296 -17 2406 30 39 23 chr4 33864690 33864995 -168463352 - AluY SINE Alu -1 310 1 180 158 0 0 chr4 33865765 33865803 -168462544 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 57 0 0 chr4 33866496 33866531 -168461816 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr4 33867178 33867220 -168461127 + AT_rich Low_complexity Low_complexity 1 42 0 183 234 21 0 chr4 33867429 33867476 -168460871 - L2 LINE L2 -221 3051 3004 635 332 43 38 chr4 33868361 33868756 -168459591 + LTR16B LTR ERVL 37 433 -31 26 30 0 0 chr4 33869030 33869063 -168459284 + AT_rich Low_complexity Low_complexity 1 33 0 224 214 0 0 chr4 33871247 33871303 -168457044 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 484 277 89 31 chr4 33871742 33871957 -168456390 + MIR SINE MIR 4 225 -21 351 325 41 71 chr4 33874257 33874420 -168453927 + MIR3 SINE MIR 6 164 -44 1995 129 13 31 chr4 33874420 33874738 -168453609 - AluSx SINE Alu 0 312 1 351 325 41 71 chr4 33874738 33874771 -168453576 + MIR3 SINE MIR 164 196 -12 232 206 44 29 chr4 33875303 33875371 -168452976 + GA-rich Low_complexity Low_complexity 3 71 0 330 67 0 0 chr4 33875384 33875429 -168452918 + (GA)n Simple_repeat Simple_repeat 2 46 0 27 0 0 0 chr4 33875522 33875549 -168452798 + AT_rich Low_complexity Low_complexity 1 27 0 26 50 0 0 chr4 33876257 33876297 -168452050 + AT_rich Low_complexity Low_complexity 1 40 0 47 19 0 0 chr4 33876329 33876383 -168451964 + AT_rich Low_complexity Low_complexity 1 54 0 22 70 0 0 chr4 33877629 33877672 -168450675 + AT_rich Low_complexity Low_complexity 1 43 0 689 150 8 8 chr4 33878217 33878344 -168450003 - MER52A LTR ERV1 0 1755 1629 * 3499 208 163 34 chr4 33878342 33879340 -168449007 - MER52A LTR ERV1 -628 1127 1 380 138 0 25 chr4 33879908 33879988 -168448359 + (TCCC)n Simple_repeat Simple_repeat 2 79 0 750 81 24 8 chr4 33879989 33880113 -168448234 + (TTTC)n Simple_repeat Simple_repeat 4 129 0 787 170 18 118 chr4 33880113 33880520 -168447827 - AluJo SINE Alu 0 469 86 448 256 87 17 chr4 33880534 33880706 -168447641 + MLT1I LTR MaLR 226 409 0 3241 73 5 0 chr4 33881113 33881538 -168446809 - L1PA7 LINE L1 -11 6143 5717 387 320 50 23 chr4 33881939 33882158 -168446189 - HAL1 LINE L1 -1322 1185 961 535 353 83 9 chr4 33882232 33882569 -168445778 - HAL1 LINE L1 -1994 513 152 2390 88 0 0 chr4 33882715 33883020 -168445327 + AluY SINE Alu 3 307 -4 2068 131 3 3 chr4 33883036 33883342 -168445005 + AluSx SINE Alu 1 306 -6 288 205 71 94 chr4 33883342 33883469 -168444878 - L1MB8 LINE L1 -11 6167 6044 276 348 7 15 chr4 33883488 33883623 -168444724 + (TATG)n Simple_repeat Simple_repeat 2 135 0 252 0 0 0 chr4 33883803 33883831 -168444516 + (TG)n Simple_repeat Simple_repeat 1 28 0 357 226 0 49 chr4 33884584 33884686 -168443661 - L1MC4 LINE L1 -1339 6983 1996 198 224 0 0 chr4 33884686 33884735 -168443612 + (TA)n Simple_repeat Simple_repeat 2 50 0 21 71 0 0 chr4 33885152 33885194 -168443153 + AT_rich Low_complexity Low_complexity 1 42 0 209 328 75 52 chr4 33886134 33886268 -168442079 - L2 LINE L2 0 3272 3136 501 95 14 0 chr4 33886557 33886631 -168441716 + MADE1 DNA Mariner 1 75 -5 2214 112 0 0 chr4 33886767 33887063 -168441284 - AluSg SINE Alu -14 296 1 452 303 95 84 chr4 33887246 33887603 -168440744 + LTR67 LTR ERVL 146 506 -51 384 333 138 62 chr4 33888390 33888903 -168439444 - L2 LINE L2 -52 3261 2706 1899 332 57 20 chr4 33888938 33889090 -168439257 - L2 LINE L2 -1754 1560 1415 563 0 0 15 chr4 33889090 33889158 -168439189 + (TAAAA)n Simple_repeat Simple_repeat 1 67 0 1899 332 57 20 chr4 33889158 33889964 -168438383 - L2 LINE L2 -1899 1415 566 1920 176 78 24 chr4 33890622 33891032 -168437315 + MSTB1 LTR MaLR 1 432 0 1982 185 82 0 chr4 33891837 33892226 -168436121 - MSTA LTR MaLR 0 428 8 327 284 74 40 chr4 33892629 33892777 -168435570 + LTR16C LTR ERVL 85 237 -254 2158 197 36 24 chr4 33893144 33893641 -168434706 - MLT1D LTR MaLR 0 505 3 1307 146 27 0 chr4 33893792 33894012 -168434335 + AluJb SINE Alu 85 310 -2 647 173 17 11 chr4 33894378 33894557 -168433790 + (CA)n Simple_repeat Simple_repeat 1 180 0 1272 259 63 66 chr4 33896263 33896926 -168431421 + L1MC4 LINE L1 7112 7772 -270 291 85 0 0 chr4 33897383 33897430 -168430917 + (TTTTG)n Simple_repeat Simple_repeat 3 49 0 1962 106 9 44 chr4 33898046 33898367 -168429980 - AluSg SINE Alu 0 310 1 1976 169 46 33 chr4 33898515 33899048 -168429299 - MLT2A1 LTR ERVL -1 553 1 200 350 25 0 chr4 33899057 33899137 -168429210 + L2 LINE L2 2920 3001 -312 207 0 0 0 chr4 33899328 33899351 -168428996 + (T)n Simple_repeat Simple_repeat 1 23 0 408 341 22 39 chr4 33900134 33900313 -168428034 + MIR SINE MIR 80 255 -7 256 314 69 57 chr4 33901425 33901600 -168426747 - MIR SINE MIR -7 255 79 204 419 9 0 chr4 33901742 33901847 -168426500 - L2 LINE L2 -214 3058 2953 762 211 188 0 chr4 33903369 33903587 -168424760 + L1MC4 LINE L1 7415 7673 -369 233 272 26 9 chr4 33904046 33904160 -168424187 + T-rich Low_complexity Low_complexity 4 119 0 24 32 0 0 chr4 33904895 33904926 -168423421 + AT_rich Low_complexity Low_complexity 1 31 0 224 294 144 20 chr4 33905010 33905163 -168423184 - MIR SINE MIR 0 262 91 191 271 59 47 chr4 33905489 33905574 -168422773 + MIR SINE MIR 104 189 -73 22 103 0 0 chr4 33906392 33906470 -168421877 + AT_rich Low_complexity Low_complexity 1 78 0 248 316 13 0 chr4 33907289 33907365 -168420982 + MIR SINE MIR 180 256 -6 234 259 0 37 chr4 33908379 33908460 -168419887 + T-rich Low_complexity Low_complexity 2 79 0 375 23 0 0 chr4 33908726 33908770 -168419577 + (TG)n Simple_repeat Simple_repeat 1 44 0 180 0 0 0 chr4 33908771 33908791 -168419556 + (GA)n Simple_repeat Simple_repeat 1 20 0 395 248 92 34 chr4 33910711 33910851 -168417496 - MIR SINE MIR -63 145 19 374 289 160 13 chr4 33911180 33911336 -168417011 - MIR SINE MIR -13 249 71 2351 159 27 9 chr4 33911486 33911901 -168416446 - MSTA LTR MaLR -6 422 1 23 54 0 0 chr4 33912514 33912551 -168415796 + AT_rich Low_complexity Low_complexity 1 37 0 210 231 0 0 chr4 33912636 33912687 -168415660 + polypurine Low_complexity Low_complexity 1 51 0 225 0 0 0 chr4 33913120 33913145 -168415202 + (CA)n Simple_repeat Simple_repeat 2 26 0 1945 137 52 25 chr4 33913186 33913551 -168414796 + THE1C LTR MaLR 1 375 0 960 128 44 33 chr4 33913553 33913733 -168414614 + THE1C-int LTR MaLR 3 184 -1396 1963 187 30 32 chr4 33913953 33914386 -168413961 - MSTB1 LTR MaLR 0 432 1 360 0 0 0 chr4 33915158 33915198 -168413149 + (TG)n Simple_repeat Simple_repeat 2 41 0 222 239 15 0 chr4 33915198 33915265 -168413082 + (TA)n Simple_repeat Simple_repeat 2 69 0 24 32 0 0 chr4 33916648 33916679 -168411668 + AT_rich Low_complexity Low_complexity 1 31 0 3324 130 23 38 chr4 33916718 33917247 -168411100 + MER1A DNA MER1_type 1 521 -8 2231 98 0 13 chr4 33917542 33917848 -168410499 - AluSc SINE Alu -7 302 1 186 301 43 32 chr4 33917879 33917972 -168410375 - L2 LINE L2 -535 2779 2686 202 200 0 0 chr4 33918492 33918527 -168409820 - MIR SINE MIR -10 252 218 198 143 0 0 chr4 33919065 33919100 -168409247 + (GGA)n Simple_repeat Simple_repeat 2 36 0 266 197 26 0 chr4 34119597 34119673 -168208674 + CT-rich Low_complexity Low_complexity 4 81 0 582 217 17 0 chr4 34119673 34119793 -168208554 - AluSg/x SINE Alu 0 312 191 304 0 0 82 chr4 34119862 34119923 -168208424 + (TTCC)n Simple_repeat Simple_repeat 2 57 0 313 49 0 0 chr4 34119927 34119968 -168208379 + AluSg/x SINE Alu 196 236 -64 1157 144 6 17 chr4 34119972 34120153 -168208194 - AluSx SINE Alu -133 179 1 26 0 0 0 chr4 34120202 34120228 -168208119 + AT_rich Low_complexity Low_complexity 1 26 0 896 268 29 4 chr4 34120777 34121023 -168207324 - LTR40b LTR ERVL -181 281 30 1360 107 0 0 chr4 34121222 34121399 -168206948 + AluSg SINE Alu 1 177 -133 22 35 0 0 chr4 34121679 34121708 -168206639 + AT_rich Low_complexity Low_complexity 1 29 0 381 304 63 76 chr4 34121923 34122081 -168206266 + MLT1E LTR MaLR 203 358 -235 1177 201 78 39 chr4 34123378 34123662 -168204685 + AluJo SINE Alu 2 296 -6 21 36 0 0 chr4 34125141 34125169 -168203178 + AT_rich Low_complexity Low_complexity 1 28 0 2444 58 3 3 chr4 34125266 34125575 -168202772 - AluY SINE Alu -2 309 1 335 186 0 47 chr4 34125679 34125765 -168202582 - L1MCa LINE L1 -4359 2067 1986 323 267 0 11 chr4 34125703 34125793 -168202554 + L1MC4 LINE L1 6615 6703 -1339 * 25 31 0 0 chr4 34125943 34125975 -168202372 + AT_rich Low_complexity Low_complexity 1 32 0 2564 186 47 6 chr4 34126513 34127008 -168201339 + MLT2B2 LTR ERVL 1 515 0 1760 118 16 77 chr4 34128159 34128472 -168199875 + AluY SINE Alu 1 294 -17 23 0 0 0 chr4 34128744 34128767 -168199580 + AT_rich Low_complexity Low_complexity 1 23 0 2155 105 0 3 chr4 34128965 34129259 -168199088 + AluSg SINE Alu 1 293 -17 23 54 0 0 chr4 34129697 34129734 -168198613 + AT_rich Low_complexity Low_complexity 1 37 0 12115 110 17 13 chr4 34129734 34132433 -168195914 - L1PA8A LINE L1 -9 6122 3421 616 278 6 11 chr4 34132798 34132978 -168195369 - L1MC4 LINE L1 -1036 7006 6828 24 67 0 0 chr4 34133223 34133268 -168195079 + AT_rich Low_complexity Low_complexity 1 45 0 2115 110 0 3 chr4 34133342 34133656 -168194691 - AluY SINE Alu 0 313 1 28 29 0 0 chr4 34133890 34133925 -168194422 + AT_rich Low_complexity Low_complexity 1 35 0 212 0 36 0 chr4 34134451 34134479 -168193868 + (CA)n Simple_repeat Simple_repeat 2 30 0 3627 118 59 40 chr4 34134627 34135588 -168192759 + MER11A LTR ERVK 1 1071 0 2777 186 74 41 chr4 34135641 34136317 -168192030 + LTR8A LTR ERV1 30 727 0 2099 130 0 0 chr4 34137096 34137397 -168190950 - AluSg SINE Alu -8 302 2 362 324 165 10 chr4 34137812 34138217 -168190130 - MLT1J LTR MaLR -43 468 1 27 73 0 0 chr4 34138263 34138318 -168190029 + AT_rich Low_complexity Low_complexity 1 55 0 210 255 0 0 chr4 34138643 34138690 -168189657 + (AATAG)n Simple_repeat Simple_repeat 2 48 0 345 159 32 0 chr4 34138694 34138757 -168189590 + THE1C LTR MaLR 303 367 -8 300 27 0 0 chr4 34138779 34138816 -168189531 + (CA)n Simple_repeat Simple_repeat 1 37 0 240 185 31 77 chr4 34139289 34139354 -168188993 + tRNA-Met-e tRNA tRNA 1 62 -13 822 237 21 5 chr4 34140094 34140288 -168188059 + MER72 LTR ERV1 1 197 -525 2061 207 14 57 chr4 34140350 34140644 -168187703 + MER72 LTR ERV1 232 537 -185 1876 168 66 57 chr4 34140644 34141066 -168187281 + MSTB LTR MaLR 1 426 0 2061 207 14 57 chr4 34141066 34141210 -168187137 + MER72 LTR ERV1 537 647 -75 1987 162 9 17 chr4 34141210 34141556 -168186791 - MER61A LTR ERV1 0 343 1 2061 207 14 57 chr4 34141556 34141629 -168186718 + MER72 LTR ERV1 647 722 0 874 208 5 5 chr4 34141736 34141943 -168186404 - AluSq SINE Alu 0 313 107 5679 141 7 45 chr4 34142043 34143101 -168185246 - L1P3 LINE L1 -2951 3510 2494 * 7172 123 28 14 chr4 34143081 34144206 -168184141 - L1P3 LINE L1 -4734 1141 2 25 31 0 0 chr4 34144527 34144559 -168183788 + AT_rich Low_complexity Low_complexity 1 32 0 218 140 0 20 chr4 34145669 34145719 -168182628 + (TA)n Simple_repeat Simple_repeat 1 49 0 545 297 19 13 chr4 34146003 34146158 -168182189 - MLT1H LTR MaLR -329 220 65 7790 16 0 0 chr4 34146569 34147631 -168180716 - L1PA2 LINE L1 -6 6149 5088 285 179 74 53 chr4 34147787 34147882 -168180465 - L1MC4 LINE L1 -21 8021 7925 1013 296 113 39 chr4 34147990 34148949 -168179398 - L1MC4 LINE L1 -219 7823 6794 309 89 0 0 chr4 34149012 34149057 -168179290 + (CA)n Simple_repeat Simple_repeat 2 46 0 2022 134 0 3 chr4 34149144 34149435 -168178912 - AluSg SINE Alu -20 290 1 23 0 0 0 chr4 34149722 34149745 -168178602 + AT_rich Low_complexity Low_complexity 1 23 0 1410 266 127 12 chr4 34149828 34150395 -168177952 - L1MC4 LINE L1 -141 7901 7270 25 0 0 0 chr4 34151803 34151828 -168176519 + AT_rich Low_complexity Low_complexity 1 25 0 1060 260 4 0 chr4 34152192 34152434 -168175913 + MER89 LTR ERV1 317 559 0 369 0 0 0 chr4 34152813 34152854 -168175493 + (TA)n Simple_repeat Simple_repeat 2 42 0 899 220 73 5 chr4 34153097 34153288 -168175059 + AluJo SINE Alu 1 204 -108 2158 175 11 45 chr4 34153626 34154067 -168174280 - MSTB LTR MaLR 0 426 1 2067 172 22 0 chr4 34154089 34154444 -168173903 + THE1B LTR MaLR 2 364 0 24 77 0 0 chr4 34155221 34155273 -168173074 + AT_rich Low_complexity Low_complexity 1 52 0 237 174 0 22 chr4 34155519 34155565 -168172782 + MIR SINE MIR 100 144 -118 348 64 0 0 chr4 34155717 34155764 -168172583 + (TG)n Simple_repeat Simple_repeat 2 48 0 27 62 0 0 chr4 34158254 34158302 -168170045 + AT_rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr4 34158909 34158938 -168169409 + AT_rich Low_complexity Low_complexity 1 29 0 263 372 49 49 chr4 34159042 34159268 -168169079 - MIR SINE MIR -8 254 29 28 0 0 0 chr4 34159453 34159481 -168168866 + AT_rich Low_complexity Low_complexity 1 28 0 28 71 0 0 chr4 34160020 34160076 -168168271 + AT_rich Low_complexity Low_complexity 1 56 0 233 380 68 19 chr4 34161581 34161786 -168166561 + LTR16C LTR ERVL 160 374 -117 648 204 78 26 chr4 34162105 34162296 -168166051 - MER2 DNA MER2_type -144 201 1 2086 183 17 15 chr4 34162758 34163203 -168165144 + L1MA4 LINE L1 5824 6272 -28 1736 176 64 14 chr4 34163203 34163560 -168164787 + THE1C LTR MaLR 1 375 0 2086 183 17 15 chr4 34163560 34163578 -168164769 + L1MA4 LINE L1 6272 6288 -12 1615 187 78 36 chr4 34164105 34164516 -168163831 - MSTA LTR MaLR 0 428 1 7964 205 17 41 chr4 34164516 34166005 -168162342 - THE1C-int LTR MaLR 0 1651 205 1984 164 24 32 chr4 34166005 34166383 -168161964 - THE1C LTR MaLR 0 375 1 7964 205 17 41 chr4 34166383 34166583 -168161764 - THE1C-int LTR MaLR -1446 205 2 1499 171 196 19 chr4 34166585 34166948 -168161399 - MSTA LTR MaLR -1 427 1 279 409 43 16 chr4 34167079 34167382 -168160965 - L2 LINE L2 -337 2977 2667 369 315 179 14 chr4 34167387 34167739 -168160608 - L2 LINE L2 -993 2321 1912 1637 209 0 0 chr4 34167740 34168051 -168160296 + AluJb SINE Alu 1 311 -1 23 78 0 0 chr4 34168775 34168826 -168159521 + AT_rich Low_complexity Low_complexity 1 51 0 1417 194 43 17 chr4 34170057 34170356 -168157991 + AluJo SINE Alu 1 307 -5 26 30 0 0 chr4 34170547 34170580 -168157767 + AT_rich Low_complexity Low_complexity 1 33 0 1986 127 0 3 chr4 34170987 34171279 -168157068 + AluSq SINE Alu 1 291 -22 516 264 94 34 chr4 34171544 34171926 -168156421 + L1ME2 LINE L1 731 1135 -5261 256 266 39 39 chr4 34172166 34172294 -168156053 + L1ME2 LINE L1 4816 4943 -1272 * 2399 257 66 14 chr4 34172293 34173240 -168155107 + L1ME2 LINE L1 5183 6180 -53 23 78 0 0 chr4 34173312 34173363 -168154984 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr4 34173719 34173742 -168154605 + AT_rich Low_complexity Low_complexity 1 23 0 1802 97 14 21 chr4 34173766 34174055 -168154292 - L1PB2 LINE L1 -7 6144 5858 1617 304 52 31 chr4 34174055 34174440 -168153907 + L1P5 LINE L1 5273 5665 -489 27 49 0 0 chr4 34176276 34176317 -168152030 + AT_rich Low_complexity Low_complexity 1 41 0 246 264 0 57 chr4 34176567 34176673 -168151674 + L1MEd LINE L1 55 154 -5965 275 347 26 89 chr4 34176980 34177363 -168150984 + MER115 DNA AcHobo 95 453 -240 615 223 78 0 chr4 34177765 34177958 -168150389 + MER58B DNA MER1_type 48 255 -86 1322 256 75 7 chr4 34178017 34178451 -168149896 + MER110A LTR ERV1 41 486 0 526 200 0 0 chr4 34178458 34178548 -168149799 + MER58B DNA MER1_type 252 341 0 1520 195 25 57 chr4 34179001 34179453 -168148894 - MER89 LTR ERV1 0 559 24 213 132 0 0 chr4 34180173 34180211 -168148136 + (A)n Simple_repeat Simple_repeat 1 38 0 25 0 0 0 chr4 34180660 34180685 -168147662 + AT_rich Low_complexity Low_complexity 1 25 0 192 40 0 0 chr4 34181129 34181154 -168147193 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2340 119 13 21 chr4 34181780 34182158 -168146189 - THE1C LTR MaLR 0 375 1 24 0 0 0 chr4 34182320 34182344 -168146003 + AT_rich Low_complexity Low_complexity 1 24 0 297 218 0 0 chr4 34182627 34182705 -168145642 + (TA)n Simple_repeat Simple_repeat 1 78 0 2457 236 68 7 chr4 34182731 34183346 -168145001 + MER82 DNA MER2_type 1 653 0 27 81 0 0 chr4 34183572 34183634 -168144713 + AT_rich Low_complexity Low_complexity 1 62 0 931 283 35 38 chr4 34183878 34184224 -168144123 + L1MDa LINE L1 289 633 -5907 767 116 14 14 chr4 34184270 34184416 -168143931 + (GAA)n Simple_repeat Simple_repeat 3 148 0 1856 146 7 0 chr4 34184420 34184723 -168143624 + AluSg SINE Alu 1 305 0 261 0 0 0 chr4 34184747 34184776 -168143571 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2347 224 103 38 chr4 34184804 34185761 -168142586 + L1MD1 LINE L1 4967 5992 -250 892 230 73 61 chr4 34185903 34186288 -168142059 + MLT1E LTR MaLR 94 593 0 1694 233 14 3 chr4 34186292 34186653 -168141694 - MLT1A1 LTR MaLR 0 365 1 30 45 0 0 chr4 34188352 34188396 -168139951 + AT_rich Low_complexity Low_complexity 1 44 0 721 125 0 0 chr4 34188396 34188508 -168139839 - L1PB1 LINE L1 -1 6150 6039 22 0 0 0 chr4 34188526 34188548 -168139799 + AT_rich Low_complexity Low_complexity 1 22 0 1058 295 91 23 chr4 34188720 34189238 -168139109 - MLT1H1 LTR MaLR 0 555 3 27 62 0 0 chr4 34189497 34189545 -168138802 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr4 34189635 34189657 -168138690 + AT_rich Low_complexity Low_complexity 1 22 0 234 250 19 0 chr4 34190360 34190412 -168137935 - MIR3 SINE MIR -30 178 126 384 22 0 0 chr4 34191112 34191120 -168137227 + (TG)n Simple_repeat Simple_repeat 1 53 0 384 22 0 0 chr4 34191120 34191165 -168137182 + (TG)n Simple_repeat Simple_repeat 1 45 0 208 322 102 45 chr4 34191249 34191426 -168136921 + MIR SINE MIR 2 188 -74 260 371 43 7 chr4 34191992 34192132 -168136215 - L2 LINE L2 0 3313 3169 4656 140 76 77 chr4 34192405 34193992 -168134355 - pTR5 LTR ERV1 0 2438 68 30 0 0 0 chr4 34194616 34194646 -168133701 + AT_rich Low_complexity Low_complexity 1 30 0 1192 233 30 81 chr4 34194901 34195335 -168133012 - MER39 LTR ERV1 -1 706 295 37 62 0 0 chr4 34196493 34196558 -168131789 + AT_rich Low_complexity Low_complexity 1 65 0 434 137 38 44 chr4 34196602 34197006 -168131341 + (CATATA)n Simple_repeat Simple_repeat 1 401 0 24 0 0 0 chr4 34197581 34197605 -168130742 + AT_rich Low_complexity Low_complexity 1 24 0 3538 238 45 67 chr4 34197816 34199257 -168129090 + L1M4 LINE L1 3884 5293 -853 224 0 0 61 chr4 34199591 34199624 -168128723 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1882 117 3 43 chr4 34199818 34200149 -168128198 - AluSg SINE Alu 0 310 10 235 213 0 0 chr4 34200159 34200206 -168128141 + GA-rich Low_complexity Low_complexity 1 47 0 845 95 27 7 chr4 34200209 34200356 -168127991 + (GGAA)n Simple_repeat Simple_repeat 3 152 0 243 343 0 0 chr4 34200805 34200875 -168127472 - L2 LINE L2 -17 3296 3227 418 308 53 68 chr4 34204422 34204688 -168123659 + L2 LINE L2 3047 3308 -5 227 178 0 22 chr4 34204804 34204860 -168123487 + GA-rich Low_complexity Low_complexity 1 54 0 25 35 0 52 chr4 34205777 34205835 -168122512 + AT_rich Low_complexity Low_complexity 1 55 0 1924 125 3 26 chr4 34206007 34206333 -168122014 - AluSx SINE Alu 0 312 1 1103 252 88 53 chr4 34206354 34206842 -168121505 + MLT1D LTR MaLR 1 505 0 24 103 0 0 chr4 34207072 34207159 -168121188 + AT_rich Low_complexity Low_complexity 1 87 0 1706 244 101 78 chr4 34207322 34207954 -168120393 + MLT1E1 LTR MaLR 1 647 -7 4680 224 34 1 chr4 34208019 34208961 -168119386 - HERVL-C2 LTR ERVL -3328 2436 1464 498 93 93 0 chr4 34208961 34209036 -168119311 - MSTC LTR MaLR -346 82 1 261 232 37 24 chr4 34209038 34209120 -168119227 - HERVL-C2 LTR ERVL -5569 85 3 1152 179 12 135 chr4 34209128 34209469 -168118878 - MLT2C2 LTR ERVL -6 458 160 21 36 0 0 chr4 34209871 34209899 -168118448 + AT_rich Low_complexity Low_complexity 1 28 0 2383 191 21 48 chr4 34210493 34211016 -168117331 - MER67D LTR ERV1 -5 509 1 183 42 0 0 chr4 34211205 34211229 -168117118 + (CTA)n Simple_repeat Simple_repeat 3 26 0 4222 125 3 2 chr4 34211587 34212221 -168116126 + MER41B LTR ERV1 1 635 0 3185 176 67 3 chr4 34212295 34212904 -168115443 - MER39B LTR ERV1 0 653 6 315 373 66 13 chr4 34213053 34213281 -168115066 - MIR SINE MIR -1 261 22 21 0 0 0 chr4 34213328 34213349 -168114998 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 34213830 34213858 -168114489 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 34214487 34214512 -168113835 + AT_rich Low_complexity Low_complexity 1 25 0 2031 142 0 7 chr4 34215248 34215558 -168112789 + AluSx SINE Alu 1 308 -4 279 148 33 33 chr4 34215760 34215821 -168112526 + LTR8 LTR ERV1 327 387 -304 1916 201 49 51 chr4 34215867 34216334 -168112013 + MLT1D LTR MaLR 40 505 0 539 373 93 27 chr4 34216594 34217226 -168111121 - L2 LINE L2 -426 2888 2215 1076 290 263 14 chr4 34217248 34217872 -168110475 - L2 LINE L2 -504 2810 2032 237 318 78 23 chr4 34218010 34218139 -168110208 + L2 LINE L2 2398 2533 -781 2246 93 7 3 chr4 34218378 34218688 -168109659 - AluSq SINE Alu -2 311 1 21 0 0 0 chr4 34219676 34219697 -168108650 + AT_rich Low_complexity Low_complexity 1 21 0 900 140 30 18 chr4 34220157 34220321 -168108026 - LTR49 LTR ERV1 -3 592 427 240 35 0 0 chr4 34220321 34220350 -168107997 + (CA)n Simple_repeat Simple_repeat 2 30 0 283 237 11 0 chr4 34220352 34220529 -168107818 + (TA)n Simple_repeat Simple_repeat 2 180 0 2799 133 9 0 chr4 34220558 34220987 -168107360 - LTR49 LTR ERV1 -162 433 1 1803 330 51 72 chr4 34222219 34224627 -168103720 - LTR49-int LTR ERV1 -67 7055 4699 464 345 47 34 chr4 34225022 34225468 -168102879 - LTR49-int LTR ERV1 -2811 4311 3860 4160 164 17 4 chr4 34226242 34226944 -168101403 + MER50 LTR ERV1 1 711 -23 21 0 0 0 chr4 34227043 34227064 -168101283 + AT_rich Low_complexity Low_complexity 1 21 0 702 338 193 13 chr4 34227064 34227593 -168100754 + L2 LINE L2 1020 1643 -1671 298 173 19 0 chr4 34227613 34227665 -168100682 - LTR49 LTR ERV1 0 595 543 2443 147 53 32 chr4 34227776 34228022 -168100325 - LTR49 LTR ERV1 -110 485 223 2073 103 3 44 chr4 34228022 34228341 -168100006 - AluSg1 SINE Alu -3 306 1 2443 147 53 32 chr4 34228341 34228563 -168099784 - LTR49 LTR ERV1 -372 223 7 547 313 122 7 chr4 34228574 34228862 -168099485 + L2 LINE L2 2308 2628 -686 1500 145 4 0 chr4 34228862 34229090 -168099257 - MER4E LTR ERV1 0 779 551 205 370 58 19 chr4 34229127 34229281 -168099066 - L2 LINE L2 -575 2739 2580 3966 144 65 36 chr4 34229706 34229954 -168098393 - MER4D LTR ERV1 -28 875 636 2524 56 0 3 chr4 34229954 34230258 -168098089 + AluY SINE Alu 1 303 -8 3966 144 65 36 chr4 34230258 34230504 -168097843 - MER4D LTR ERV1 -267 636 399 3282 161 18 82 chr4 34230504 34231196 -168097151 - LTR8 LTR ERV1 0 691 48 2136 91 10 17 chr4 34231196 34231494 -168096853 - AluSc SINE Alu -13 296 1 3282 161 18 82 chr4 34231494 34231540 -168096807 - LTR8 LTR ERV1 -643 48 1 3966 144 65 36 chr4 34231540 34231813 -168096534 - MER4D LTR ERV1 -504 399 85 271 321 157 52 chr4 34231849 34232171 -168096176 + L2 LINE L2 2741 3126 -187 243 0 0 0 chr4 34232171 34232198 -168096149 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 271 321 157 52 chr4 34232198 34232270 -168096077 + L2 LINE L2 3126 3189 -124 262 183 43 139 chr4 34232302 34232417 -168095930 - MER101B LTR ERV1 0 570 467 544 333 32 0 chr4 34232776 34232995 -168095352 - Charlie1a DNA MER1_type -1228 227 2 1423 196 20 119 chr4 34233065 34233469 -168094878 - MLT1A1 LTR MaLR -1 364 1 1144 85 32 113 chr4 34233784 34234031 -168094316 + L1MA3 LINE L1 6076 6302 -3 29 47 0 0 chr4 34234162 34234205 -168094142 + AT_rich Low_complexity Low_complexity 1 43 0 188 235 15 0 chr4 34234352 34234420 -168093927 + (TA)n Simple_repeat Simple_repeat 1 69 0 25 31 0 0 chr4 34234420 34234452 -168093895 + AT_rich Low_complexity Low_complexity 1 32 0 311 315 103 6 chr4 34234803 34235114 -168093233 - Charlie7 DNA MER1_type -273 2339 1999 25 0 0 0 chr4 34235255 34235280 -168093067 + AT_rich Low_complexity Low_complexity 1 25 0 1989 151 0 3 chr4 34235379 34235691 -168092656 + AluSx SINE Alu 2 312 0 1249 62 6 6 chr4 34235691 34235738 -168092609 + (GAAA)n Simple_repeat Simple_repeat 1 224 0 1249 62 6 6 chr4 34235738 34235915 -168092432 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 25 31 0 0 chr4 34236233 34236265 -168092082 + AT_rich Low_complexity Low_complexity 1 32 0 483 272 16 33 chr4 34236572 34236756 -168091591 - Charlie7 DNA MER1_type -922 1690 1510 548 284 117 47 chr4 34237151 34237468 -168090879 + HAL1 LINE L1 133 471 -2036 517 354 87 30 chr4 34237886 34238313 -168090034 + MLT1J LTR MaLR 5 455 -56 574 278 18 18 chr4 34238507 34238676 -168089671 - L1MD3 LINE L1 -1115 6880 6712 1209 274 24 75 chr4 34238682 34239229 -168089118 + MER34 LTR ERV1 3 521 -21 236 209 77 66 chr4 34239232 34239323 -168089024 - L1MC4 LINE L1 -1279 6763 6672 3606 293 56 38 chr4 34239770 34243009 -168085338 - L1PBa LINE L1 -3456 3406 40 39 0 0 0 chr4 34243277 34243316 -168085031 + AT_rich Low_complexity Low_complexity 1 39 0 345 293 83 35 chr4 34243554 34243902 -168084445 + HAL1b LINE L1 566 930 -418 344 297 59 0 chr4 34244116 34244217 -168084130 + MSTC LTR MaLR 1 107 -321 271 167 133 0 chr4 34244263 34244323 -168084024 + MSTD LTR MaLR 329 396 0 571 241 49 37 chr4 34244328 34244490 -168083857 + MSTD-int LTR MaLR 62 225 -1510 5527 212 27 23 chr4 34244666 34245162 -168083185 - L1MCa LINE L1 -5072 1354 862 186 43 0 0 chr4 34245162 34245185 -168083162 + (TG)n Simple_repeat Simple_repeat 2 24 0 5527 212 27 23 chr4 34245185 34246001 -168082346 - L1MCa LINE L1 -5564 862 36 242 327 71 26 chr4 34246045 34246158 -168082189 - L2 LINE L2 -21 3292 3175 4669 234 23 18 chr4 34246527 34248215 -168080132 - L1PA15-16 LINE L1 -3275 4309 2614 537 337 53 26 chr4 34248584 34248961 -168079386 - L1PA15-16 LINE L1 -7188 393 7 268 250 0 0 chr4 34250051 34250119 -168078228 - MER4-int LTR ERV1 -5419 1179 1112 458 239 8 0 chr4 34250152 34250286 -168078061 + (TATATG)n Simple_repeat Simple_repeat 4 138 0 311 309 85 35 chr4 34250452 34250653 -168077694 - LTR16C LTR ERVL -9 482 272 553 247 22 16 chr4 34251073 34251255 -168077092 + LTR43 LTR ERV1 154 336 -266 829 236 68 71 chr4 34251317 34251518 -168076829 + LTR40a LTR ERVL 199 399 -120 2216 152 8 16 chr4 34251518 34251894 -168076453 - THE1C LTR MaLR 0 375 3 9216 142 41 10 chr4 34251896 34253428 -168074919 - THE1C-int LTR MaLR 0 1580 1 2355 116 24 19 chr4 34253428 34253799 -168074548 - THE1C LTR MaLR 0 375 3 829 236 68 71 chr4 34253799 34253915 -168074432 + LTR40a LTR ERVL 398 519 0 277 130 65 51 chr4 34254628 34254766 -168073581 + (TA)n Simple_repeat Simple_repeat 2 141 0 2044 56 0 8 chr4 34254977 34255226 -168073121 + AluY SINE Alu 1 247 -64 322 0 0 0 chr4 34255226 34255262 -168073085 - THE1B LTR MaLR -326 38 3 337 111 37 0 chr4 34255266 34255320 -168073027 + AluY SINE Alu 248 303 -5 1854 143 11 0 chr4 34255548 34255821 -168072526 + AluSx SINE Alu 1 276 -36 1332 308 77 23 chr4 34255868 34256628 -168071719 + L1M2a LINE L1 7 958 -6210 689 258 87 35 chr4 34256686 34256915 -168071432 + L1M2a LINE L1 1744 1984 -5184 * 5163 174 31 19 chr4 34256911 34258320 -168070027 + L1MA6 LINE L1 4861 6298 -2 2010 145 3 6 chr4 34258330 34258616 -168069731 + AluSx SINE Alu 1 287 -25 489 17 0 0 chr4 34258616 34258674 -168069673 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2010 145 3 6 chr4 34258674 34258698 -168069649 + AluSx SINE Alu 287 310 -2 198 350 34 17 chr4 34260262 34260379 -168067968 - L2 LINE L2 -4 3309 3191 2091 136 25 35 chr4 34261968 34262336 -168066011 + THE1B LTR MaLR 1 364 0 363 125 0 0 chr4 34262336 34262392 -168065955 + THE1B-int LTR MaLR 1 56 -1524 * 7557 125 1 10 chr4 34262389 34263490 -168064857 + THE1B-int LTR MaLR 489 1579 -1 2197 128 19 25 chr4 34263490 34263856 -168064491 + THE1B LTR MaLR 1 364 0 213 333 58 29 chr4 34264107 34264245 -168064102 - MIR3 SINE MIR -48 160 19 254 167 0 0 chr4 34264907 34264943 -168063404 + LTR16A1 LTR ERVL 410 445 -12 186 71 0 0 chr4 34265051 34265079 -168063268 + (TTA)n Simple_repeat Simple_repeat 3 30 0 1481 209 84 29 chr4 34265253 34265597 -168062750 - MLT1A1 LTR MaLR -2 363 1 183 318 0 0 chr4 34265726 34265770 -168062577 + L2 LINE L2 3222 3265 -7 195 368 0 0 chr4 34265984 34266060 -168062287 - L2 LINE L2 -3 3269 3194 23 0 0 0 chr4 34266502 34266525 -168061822 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr4 34268261 34268294 -168060053 + AT_rich Low_complexity Low_complexity 1 33 0 687 255 33 11 chr4 34268422 34268606 -168059741 + MER5A DNA MER1_type 2 189 0 237 198 151 38 chr4 34268965 34269071 -168059276 + L1MA5A LINE L1 6050 6167 -130 374 210 8 25 chr4 34269072 34269191 -168059156 + L1MA3 LINE L1 6189 6305 0 1627 175 13 58 chr4 34269313 34269690 -168058657 - MER46B DNA MER2_type 0 236 2 1410 236 13 3 chr4 34270246 34270555 -168057792 - AluJo SINE Alu 0 312 1 1922 141 45 45 chr4 34270676 34270865 -168057482 - THE1C LTR MaLR 0 375 184 2392 100 0 0 chr4 34270865 34271176 -168057171 + AluY SINE Alu 1 311 0 1922 141 45 45 chr4 34271176 34271361 -168056986 - THE1C LTR MaLR -190 185 1 217 204 0 0 chr4 34272689 34272703 -168055644 + (CATATA)n Simple_repeat Simple_repeat 6 19 -30 1864 140 0 33 chr4 34272703 34273003 -168055344 + AluSx SINE Alu 1 290 -22 217 204 0 0 chr4 34273003 34273032 -168055315 + (CATATA)n Simple_repeat Simple_repeat 18 49 0 23 0 0 0 chr4 34273511 34273534 -168054813 + AT_rich Low_complexity Low_complexity 1 23 0 996 144 12 6 chr4 34274044 34274204 -168054143 + AluSg/x SINE Alu 139 299 -11 813 208 25 0 chr4 34274372 34274531 -168053816 + MER6 DNA MER2_type 361 523 -342 3427 150 12 37 chr4 34274535 34274769 -168053578 - L1PA16 LINE L1 -8 6158 5920 2422 54 0 17 chr4 34274769 34275096 -168053251 - AluY SINE Alu 0 311 1 3427 150 12 37 chr4 34275096 34275509 -168052838 - L1PA16 LINE L1 -246 5920 5527 972 176 40 30 chr4 34276051 34276250 -168052097 + MER2 DNA MER2_type 1 201 -144 566 307 21 50 chr4 34276572 34276855 -168051492 + LTR16B LTR ERVL 147 421 -43 2097 150 16 22 chr4 34276881 34277247 -168051100 - THE1B LTR MaLR 0 364 1 27 0 0 0 chr4 34278202 34278229 -168050118 + AT_rich Low_complexity Low_complexity 1 27 0 337 310 46 77 chr4 34379171 34379432 -167948915 + L2 LINE L2 3020 3272 0 347 235 13 74 chr4 34379697 34379846 -167948501 + MLT1K LTR MaLR 434 573 -15 2340 75 3 0 chr4 34379848 34380142 -167948205 - AluSp SINE Alu -18 295 1 691 175 39 19 chr4 34380155 34380309 -167948038 - L1MB8 LINE L1 -1 6177 6021 2096 122 3 0 chr4 34380310 34380606 -167947741 + AluJb SINE Alu 2 298 -14 394 236 16 8 chr4 34380615 34380738 -167947609 + GA-rich Low_complexity Low_complexity 4 127 0 2109 228 45 19 chr4 34380742 34381320 -167947027 - L1MB7 LINE L1 -152 6032 5440 919 177 11 120 chr4 34381527 34381748 -167946599 - L1MB7 LINE L1 -717 5466 5306 2239 81 20 0 chr4 34381748 34382043 -167946304 - AluY SINE Alu -10 301 1 919 177 11 120 chr4 34382043 34382229 -167946118 - L1MB7 LINE L1 -877 5306 5101 460 241 30 0 chr4 34383142 34383270 -167945077 + MIR SINE MIR 22 152 -60 243 380 134 0 chr4 34383784 34383926 -167944421 + MIR SINE MIR 32 192 -70 360 0 0 0 chr4 34383994 34384034 -167944313 + (TG)n Simple_repeat Simple_repeat 2 41 0 426 157 124 0 chr4 34384182 34384271 -167944076 - MER5A DNA MER1_type -80 109 10 2550 58 0 3 chr4 34384914 34385226 -167943121 - AluY SINE Alu 0 311 1 265 250 15 0 chr4 34385247 34385315 -167943032 + MER116 DNA Mariner 7 75 -5 507 270 54 14 chr4 34385869 34386091 -167942256 - LTR52 LTR ERVL -125 296 66 2117 135 3 0 chr4 34386572 34386883 -167941464 - AluSx SINE Alu 0 312 1 1422 275 88 8 chr4 34387217 34387741 -167940606 + MLT1F1 LTR MaLR 2 567 0 190 259 198 9 chr4 34388211 34388327 -167940020 + MIR SINE MIR 28 165 -97 1040 142 16 16 chr4 34388678 34388861 -167939486 - AluJb SINE Alu 0 312 130 1602 234 66 49 chr4 34388865 34389398 -167938949 - L1MB5 LINE L1 -51 6123 5582 251 254 42 0 chr4 34389705 34389776 -167938571 + LTR16C LTR ERVL 144 217 -274 272 240 47 23 chr4 34389862 34389991 -167938356 + LTR16C LTR ERVL 360 491 0 186 43 0 0 chr4 34390172 34390195 -167938152 + (TG)n Simple_repeat Simple_repeat 2 24 0 249 261 0 0 chr4 34390359 34390447 -167937900 + (TG)n Simple_repeat Simple_repeat 1 88 0 714 302 29 0 chr4 34390465 34390670 -167937677 - MIR SINE MIR -16 246 36 462 298 147 11 chr4 34391591 34391870 -167936477 + L1ME3A LINE L1 5829 6145 -25 820 268 84 9 chr4 34392412 34392733 -167935614 + MLT1J2 LTR MaLR 1 345 -105 2080 126 3 0 chr4 34393040 34393334 -167935013 + AluSx SINE Alu 2 296 -16 1911 157 3 10 chr4 34393462 34393775 -167934572 - AluJo SINE Alu -1 311 1 2278 106 0 0 chr4 34394169 34394480 -167933867 + AluSx SINE Alu 1 311 -1 707 146 0 0 chr4 34394542 34394652 -167933695 - AluSp/q SINE Alu -15 298 189 1314 25 0 0 chr4 34395083 34395240 -167933107 + L1PA5 LINE L1 5998 6154 0 180 158 26 0 chr4 34395289 34395327 -167933020 + MIR SINE MIR 81 119 -89 2168 105 0 10 chr4 34395430 34395734 -167932613 - AluSx SINE Alu -11 301 1 1358 191 39 21 chr4 34395736 34396018 -167932329 - AluJb SINE Alu -25 287 1 2201 82 0 63 chr4 34396399 34396715 -167931632 + AluSx SINE Alu 1 296 -16 1206 181 54 73 chr4 34396921 34397275 -167931072 + MLT1B LTR MaLR 44 390 0 23 0 0 0 chr4 34397662 34397685 -167930662 + AT_rich Low_complexity Low_complexity 1 23 0 1061 209 27 9 chr4 34397934 34398154 -167930193 - MER58A DNA MER1_type 0 224 1 253 290 50 20 chr4 34398222 34398322 -167930025 + MIR SINE MIR 20 122 -140 1505 154 27 8 chr4 34398925 34399184 -167929163 + AluJo SINE Alu 46 309 -3 2124 99 20 0 chr4 34399186 34399479 -167928868 + AluSx SINE Alu 1 299 -13 762 207 39 20 chr4 34399481 34399638 -167928709 + L1MA10 LINE L1 6128 6291 -43 1996 140 0 3 chr4 34399638 34399930 -167928417 - AluSx SINE Alu -21 291 1 762 207 39 20 chr4 34399930 34399975 -167928372 + L1MA10 LINE L1 6291 6334 0 646 296 107 46 chr4 34400046 34400075 -167928272 - MER20B DNA MER1_type -2 781 755 1658 36 0 0 chr4 34400075 34400268 -167928079 - AluY SINE Alu -14 297 105 646 296 107 46 chr4 34400268 34400808 -167927539 - MER20B DNA MER1_type -28 755 177 339 368 52 0 chr4 34400954 34401128 -167927219 + MIR SINE MIR 21 203 -59 2067 110 0 36 chr4 34401316 34401624 -167926723 + AluSx SINE Alu 1 297 -15 281 304 54 18 chr4 34402300 34402412 -167925935 - L2 LINE L2 0 3272 3157 259 296 67 7 chr4 34402676 34402811 -167925536 - MIR3 SINE MIR -21 187 45 2325 207 77 10 chr4 34403644 34404244 -167924103 + L1MB8 LINE L1 5538 6177 -1 1547 264 70 37 chr4 34404259 34404680 -167923667 + L1ME3A LINE L1 5501 5907 -263 2551 50 0 0 chr4 34404680 34404983 -167923364 - AluY SINE Alu -8 303 1 2148 134 0 0 chr4 34404983 34405289 -167923058 - AluSx SINE Alu -6 306 1 1547 264 70 37 chr4 34405289 34405507 -167922840 + L1ME3A LINE L1 5906 6162 -8 2472 62 0 0 chr4 34405521 34405826 -167922521 + AluY SINE Alu 1 305 -6 2242 114 0 3 chr4 34405852 34406158 -167922189 + AluSg SINE Alu 1 305 -5 1011 257 110 13 chr4 34406169 34406543 -167921804 + L1MB7 LINE L1 5721 6130 -54 383 308 103 37 chr4 34406667 34406720 -167921627 - MIR SINE MIR -14 248 200 2025 165 122 38 chr4 34406720 34407069 -167921278 - MSTC LTR MaLR 0 428 41 2345 78 7 10 chr4 34407069 34407377 -167920970 + AluSp SINE Alu 1 307 -6 2025 165 122 38 chr4 34407377 34407422 -167920925 - MSTC LTR MaLR -387 41 1 383 308 103 37 chr4 34407422 34407582 -167920765 - MIR SINE MIR -62 200 21 345 47 0 0 chr4 34407837 34407880 -167920467 + (CA)n Simple_repeat Simple_repeat 2 44 0 371 265 205 0 chr4 34407972 34408123 -167920224 - MIR SINE MIR -74 188 7 1425 245 19 13 chr4 34408655 34409027 -167919320 + MLT2D LTR ERVL 1 374 -40 542 237 5 9 chr4 34409027 34409810 -167918537 + (CA)n Simple_repeat Simple_repeat 1 780 0 252 188 0 0 chr4 34409816 34409864 -167918483 + MLT2D LTR ERVL 350 397 0 2043 119 0 7 chr4 34409987 34410297 -167918050 + AluSx SINE Alu 1 308 0 395 282 29 58 chr4 34410372 34410546 -167917801 + MIR SINE MIR 80 248 -14 237 349 7 72 chr4 34410583 34410634 -167917713 + MER5A DNA MER1_type 26 79 -110 2298 92 3 0 chr4 34410634 34410937 -167917410 + AluSp SINE Alu 1 304 -9 237 349 7 72 chr4 34410937 34411037 -167917310 + MER5A DNA MER1_type 79 167 -22 248 289 31 39 chr4 34412533 34412661 -167915686 + (CCCCAG)n Simple_repeat Simple_repeat 6 132 0 219 389 87 0 chr4 34413407 34413533 -167914814 - MIR SINE MIR -9 253 117 808 242 24 9 chr4 34413765 34413976 -167914371 + MER20 DNA MER1_type 6 219 0 308 235 0 82 chr4 34414002 34414100 -167914247 - L3 LINE CR1 -73 1504 1415 755 201 6 0 chr4 34414542 34414716 -167913631 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 885 168 0 0 chr4 34414734 34414913 -167913434 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 417 320 30 0 chr4 34415000 34415142 -167913205 - MIR SINE MIR -62 146 5 200 354 25 13 chr4 34415355 34415434 -167912913 - L2 LINE L2 -42 3271 3192 568 227 155 0 chr4 34415476 34415670 -167912677 - Charlie4 DNA MER1_type 0 1961 1738 364 283 109 22 chr4 34415737 34415875 -167912472 + MIR SINE MIR 15 164 -98 260 282 64 0 chr4 34416007 34416085 -167912262 - Charlie4 DNA MER1_type -1863 98 16 1996 141 16 0 chr4 34417158 34417462 -167910885 + AluJb SINE Alu 4 312 0 221 0 0 33 chr4 34417728 34417758 -167910589 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 286 347 46 38 chr4 34417770 34418032 -167910315 - L1ME4a LINE L1 -3 6118 5855 404 313 28 17 chr4 34418838 34419017 -167909330 - L1ME4a LINE L1 -287 5834 5654 2337 81 0 7 chr4 34419106 34419413 -167908934 + AluY SINE Alu 1 305 -6 1777 158 118 9 chr4 34419490 34419819 -167908528 - MLT1A1 LTR MaLR 0 365 1 1880 141 0 3 chr4 34419915 34420198 -167908149 + AluSx SINE Alu 1 344 0 472 48 0 0 chr4 34420198 34420260 -167908087 + (TAAA)n Simple_repeat Simple_repeat 2 116 0 390 265 173 6 chr4 34420975 34421137 -167907210 - MIR SINE MIR -18 244 56 432 199 99 38 chr4 34421502 34421633 -167906714 - MLT1C LTR MaLR -12 455 317 969 220 72 0 chr4 34421803 34422026 -167906321 - MLT1C LTR MaLR -198 269 31 1851 158 0 0 chr4 34422026 34422324 -167906023 - AluJb SINE Alu -14 298 1 461 319 3 14 chr4 34423309 34423674 -167904673 + (CA)n Simple_repeat Simple_repeat 1 360 0 392 355 8 14 chr4 34423431 34423794 -167904553 + (CACG)n Simple_repeat Simple_repeat 1 360 0 * 328 355 125 9 chr4 34423931 34424144 -167904203 - L1ME1 LINE L1 -234 5936 5694 1897 146 0 0 chr4 34424442 34424874 -167903473 - AluSx SINE Alu 0 432 1 326 313 62 20 chr4 34424875 34425179 -167903168 - L1ME1 LINE L1 -821 5325 5009 240 314 15 11 chr4 34425506 34425600 -167902747 + MIR SINE MIR 16 111 -97 1817 259 92 20 chr4 34427074 34427569 -167900778 + MLT1E LTR MaLR 1 542 -51 1480 188 19 26 chr4 34427569 34427877 -167900470 - AluJo SINE Alu -6 306 1 1817 259 92 20 chr4 34427877 34427934 -167900413 + MLT1E LTR MaLR 542 593 0 373 257 128 14 chr4 34428140 34428288 -167900059 + MLT1J LTR MaLR 103 267 -244 336 253 282 0 chr4 34428356 34428558 -167899789 + LTR16A LTR ERVL 192 450 0 1550 132 176 139 chr4 34428901 34429311 -167899036 - MSTC LTR MaLR -3 425 1 3092 154 8 4 chr4 34430284 34430785 -167897562 - MER1A DNA MER1_type 0 529 27 596 212 9 0 chr4 34430776 34430889 -167897458 - MER3 DNA MER1_type -95 114 1 * 206 254 0 18 chr4 34430891 34430946 -167897401 + L2 LINE L2 3191 3244 -69 238 111 0 0 chr4 34430946 34430982 -167897365 - Charlie3 DNA MER1_type -2432 278 243 571 277 75 75 chr4 34431087 34431434 -167896913 + LTR16C LTR ERVL 127 473 -18 228 323 76 31 chr4 34431506 34431729 -167896618 + L1MC4a LINE L1 5797 6029 -1779 251 333 0 0 chr4 34431810 34431903 -167896444 - MER5A DNA MER1_type -50 139 47 434 263 120 0 chr4 34434514 34434647 -167893700 + MIR SINE MIR 25 173 -89 251 207 17 17 chr4 34435089 34435147 -167893200 - MLT1K LTR MaLR -8 580 523 225 62 62 0 chr4 34435149 34435197 -167893150 + (TA)n Simple_repeat Simple_repeat 1 51 0 2151 100 0 3 chr4 34435197 34435487 -167892860 - AluSq SINE Alu -24 289 1 451 220 133 64 chr4 34435505 34435678 -167892669 - MLT1K LTR MaLR -77 511 327 467 229 10 51 chr4 34435679 34435879 -167892468 + MLT1G1 LTR MaLR 1 271 -324 375 196 104 26 chr4 34435860 34435972 -167892375 + MLT1G1 LTR MaLR 455 539 -10 * 1026 157 0 30 chr4 34436380 34436554 -167891793 + AluJb SINE Alu 121 290 -22 1974 157 0 3 chr4 34436554 34436867 -167891480 + AluSx SINE Alu 1 312 0 1026 157 0 30 chr4 34436867 34436889 -167891458 + AluJb SINE Alu 290 311 -1 191 347 28 0 chr4 34436997 34437069 -167891278 - MIR SINE MIR -6 256 183 883 241 186 28 chr4 34437120 34437443 -167890904 - MLT1J LTR MaLR 0 511 138 2109 200 39 90 chr4 34437448 34437952 -167890395 - MER41D LTR ERV1 -22 535 60 2060 102 0 31 chr4 34437952 34438281 -167890066 - AluSq SINE Alu 0 320 1 2109 200 39 90 chr4 34438281 34438339 -167890008 - MER41D LTR ERV1 -497 60 1 470 267 30 15 chr4 34438339 34438474 -167889873 - MLT1J LTR MaLR -371 140 4 2333 77 0 0 chr4 34438554 34438851 -167889496 + AluY SINE Alu 1 297 -14 314 241 167 74 chr4 34438852 34438979 -167889368 + MIR SINE MIR 22 136 -126 1583 182 34 0 chr4 34438979 34439276 -167889071 - AluJo SINE Alu -5 307 1 391 244 104 30 chr4 34439277 34439441 -167888906 + MER104 DNA MER2_type 2 177 -3 314 241 167 74 chr4 34439441 34439473 -167888874 + MIR SINE MIR 135 198 -64 25 0 0 0 chr4 34439487 34439512 -167888835 + AT_rich Low_complexity Low_complexity 1 25 0 181 324 0 0 chr4 34439528 34439596 -167888751 + MIR SINE MIR 195 262 0 833 79 6 34 chr4 34439823 34440000 -167888347 + (TTAGGG)n Simple_repeat Simple_repeat 5 176 0 503 149 0 39 chr4 34440032 34440213 -167888134 + (TTAGGG)n Simple_repeat Simple_repeat 5 178 0 482 169 0 28 chr4 34440269 34440411 -167887936 + (TTAGGG)n Simple_repeat Simple_repeat 4 141 0 1137 248 90 21 chr4 34440429 34440864 -167887483 - MLT1C LTR MaLR -2 465 1 1692 178 7 10 chr4 34441623 34441916 -167886431 - AluJo SINE Alu -20 292 1 1610 256 84 27 chr4 34441916 34442475 -167885872 - MER20B DNA MER1_type -26 757 167 245 196 39 0 chr4 34442477 34442528 -167885819 - MER20B DNA MER1_type -730 53 1 667 248 15 25 chr4 34442826 34443024 -167885323 + MIR SINE MIR 17 212 -50 2109 109 7 0 chr4 34443026 34443319 -167885028 - AluSq SINE Alu -18 295 1 550 226 53 0 chr4 34443463 34443596 -167884751 - L1MB5 LINE L1 -58 6116 5977 235 299 154 8 chr4 34443764 34443881 -167884466 + MIR SINE MIR 20 153 -109 912 232 14 28 chr4 34444046 34444257 -167884090 - MER63A DNA MER1_type 0 210 3 642 314 142 12 chr4 34444491 34444829 -167883518 + MLT1L LTR MaLR 227 608 -7 1725 261 52 56 chr4 34445005 34445128 -167883219 + L1M4 LINE L1 3391 3513 -2633 2134 100 0 3 chr4 34445128 34445417 -167882930 + AluSx SINE Alu 1 288 -24 1725 261 52 56 chr4 34445417 34445948 -167882399 + L1M4 LINE L1 3513 4042 -2104 2261 65 7 3 chr4 34445948 34446239 -167882108 - AluY SINE Alu -19 292 1 1725 261 52 56 chr4 34446239 34446489 -167881858 + L1M4 LINE L1 4042 4292 -1854 821 179 8 0 chr4 34446716 34446850 -167881497 + FRAM SINE Alu 30 164 -12 632 258 149 21 chr4 34446850 34447256 -167881091 - MLT1G1 LTR MaLR -85 510 3 337 289 0 21 chr4 34447300 34447397 -167880950 + MLT1K LTR MaLR 139 233 -355 250 291 54 81 chr4 34447502 34447551 -167880796 + MLT1J LTR MaLR 367 416 -95 1891 99 4 0 chr4 34447551 34447804 -167880543 - AluSp SINE Alu -19 294 41 250 291 54 81 chr4 34447804 34447902 -167880445 + MLT1J LTR MaLR 416 510 -1 217 253 193 0 chr4 34448010 34448093 -167880254 + L2 LINE L2 3174 3272 0 398 270 68 21 chr4 34448128 34448289 -167880058 + MIR SINE MIR 31 196 -64 617 253 59 81 chr4 34448444 34448764 -167879583 - MLT1H LTR MaLR -93 456 144 2195 223 51 119 chr4 34448804 34449074 -167879273 - MER21B LTR ERV1 -61 802 515 2034 141 0 0 chr4 34449074 34449372 -167878975 + AluSx SINE Alu 3 300 -12 2195 223 51 119 chr4 34449372 34449831 -167878516 - MER21B LTR ERV1 -348 515 137 2143 168 44 29 chr4 34449831 34450243 -167878104 + MSTB LTR MaLR 5 422 -4 2195 223 51 119 chr4 34450243 34450372 -167877975 - MER21B LTR ERV1 -726 137 1 1780 179 155 69 chr4 34450509 34450974 -167877373 - MLT1D LTR MaLR 0 505 1 469 278 8 8 chr4 34451080 34451213 -167877134 + MIR SINE MIR 15 147 -115 901 217 110 104 chr4 34451225 34451437 -167876910 - MLT1A2 LTR MaLR -17 357 148 3862 127 78 5 chr4 34451437 34452028 -167876319 - MER51A LTR ERV1 0 634 1 2064 142 44 25 chr4 34452036 34452403 -167875944 + THE1C LTR MaLR 2 375 0 901 217 110 104 chr4 34452403 34452536 -167875811 - MLT1A2 LTR MaLR -232 142 1 267 257 119 10 chr4 34452541 34452642 -167875705 + MIR SINE MIR 150 261 -1 233 233 67 11 chr4 34452647 34452737 -167875610 - Charlie7 DNA MER1_type -78 2534 2440 260 303 37 28 chr4 34452826 34452935 -167875412 + MER5A DNA MER1_type 16 125 -64 891 175 12 12 chr4 34452939 34452959 -167875388 + AluJo SINE Alu 116 135 -177 1810 142 3 36 chr4 34452959 34453268 -167875079 + AluSx SINE Alu 1 299 -13 891 175 12 12 chr4 34453268 34453418 -167874929 + AluJo SINE Alu 134 286 -26 226 273 15 15 chr4 34454474 34454540 -167873807 - MIR SINE MIR -65 143 78 721 210 0 0 chr4 34454672 34454791 -167873556 - FLAM_A SINE Alu -10 123 5 2025 144 0 3 chr4 34455068 34455380 -167872967 - AluSx SINE Alu -1 311 1 268 187 29 0 chr4 34456937 34456999 -167871348 - MIR SINE MIR -62 146 77 216 0 0 0 chr4 34457098 34457122 -167871225 + (A)n Simple_repeat Simple_repeat 1 24 0 264 227 0 0 chr4 34457126 34457170 -167871177 - AluJ/monomer SINE Alu -258 44 1 341 172 0 0 chr4 34457201 34457259 -167871088 + THE1A LTR MaLR 222 279 -76 183 339 0 16 chr4 34457272 34457334 -167871013 + L2 LINE L2 3009 3069 -203 2271 100 0 0 chr4 34457539 34457840 -167870507 - AluSq SINE Alu -12 301 1 394 269 0 72 chr4 34457884 34458041 -167870306 - Charlie7 DNA MER1_type 0 2612 2472 2183 97 7 0 chr4 34458041 34458330 -167870017 - AluSx SINE Alu -21 291 1 394 269 0 72 chr4 34458330 34458380 -167869967 - Charlie7 DNA MER1_type -140 2472 2420 * 876 278 92 17 chr4 34458379 34458728 -167869619 - Charlie7 DNA MER1_type -1891 721 347 1890 141 0 13 chr4 34458806 34459105 -167869242 + AluJo SINE Alu 4 298 -14 317 275 22 0 chr4 34459235 34459355 -167868992 + LTR50 LTR ERVL 402 795 0 272 289 178 0 chr4 34459355 34459489 -167868858 - Charlie7 DNA MER1_type -2446 166 9 684 153 17 8 chr4 34459556 34459674 -167868673 + MLT1D LTR MaLR 1 119 -386 807 209 0 0 chr4 34459674 34459813 -167868534 + FLAM_C SINE Alu 2 140 -3 2066 126 0 3 chr4 34459814 34460115 -167868232 + AluSx SINE Alu 1 300 -12 2151 79 7 4 chr4 34460116 34460436 -167867911 + AluY SINE Alu 2 322 0 286 140 20 0 chr4 34460436 34460486 -167867861 + THE1A LTR MaLR 314 364 0 10114 95 37 83 chr4 34460486 34461082 -167867265 + THE1C-int LTR MaLR 1 623 -957 2184 121 0 0 chr4 34461082 34461388 -167866959 - AluSx SINE Alu -6 306 1 10114 95 37 83 chr4 34461388 34461752 -167866595 + THE1C-int LTR MaLR 623 1002 -578 2311 93 0 0 chr4 34461752 34462054 -167866293 + AluSx SINE Alu 1 302 -10 10114 95 37 83 chr4 34462054 34462748 -167865599 + THE1C-int LTR MaLR 1002 1580 0 991 91 7 14 chr4 34462748 34462891 -167865456 + THE1C LTR MaLR 1 142 -233 1499 135 4 4 chr4 34462892 34463129 -167865218 + AluJo SINE Alu 76 312 0 1617 168 31 34 chr4 34463140 34463320 -167865027 + MLT1D LTR MaLR 180 360 -145 2285 89 0 0 chr4 34463320 34463623 -167864724 + AluY SINE Alu 1 303 -8 1617 168 31 34 chr4 34463623 34463764 -167864583 + MLT1D LTR MaLR 360 500 -5 2100 114 0 3 chr4 34464009 34464307 -167864040 + AluSx SINE Alu 1 297 -15 220 253 46 11 chr4 34464467 34464554 -167863793 - MIR SINE MIR -120 142 53 383 250 20 10 chr4 34465228 34465328 -167863019 + MIR SINE MIR 32 132 -130 912 269 202 25 chr4 34465328 34465804 -167862543 + MLT1L LTR MaLR 51 610 -5 209 224 172 0 chr4 34465808 34465866 -167862481 + MIR SINE MIR 168 235 -27 1956 136 3 10 chr4 34466559 34466867 -167861480 - AluSx SINE Alu -6 306 1 340 226 119 0 chr4 34466869 34466953 -167861394 - FRAM SINE Alu -15 151 58 345 221 144 0 chr4 34567166 34567270 -167761077 + LTR40a LTR ERVL 5 123 -396 1340 297 24 12 chr4 34567371 34567789 -167760558 + LTR40a LTR ERVL 97 519 0 244 245 105 91 chr4 34567958 34568101 -167760246 + L2 LINE L2 3167 3311 -2 586 311 118 4 chr4 34568393 34568647 -167759700 + MLT1J LTR MaLR 1 283 -228 8362 164 11 20 chr4 34568685 34569435 -167758912 - Tigger2 DNA MER2_type -1 2717 1961 189 0 0 0 chr4 34569435 34569456 -167758891 + (TTAAA)n Simple_repeat Simple_repeat 4 24 0 8362 164 11 20 chr4 34569456 34570244 -167758103 - Tigger2 DNA MER2_type -757 1961 1203 12705 118 43 9 chr4 34570992 34572658 -167755689 + Charlie3 DNA MER1_type 1 1741 -965 2067 110 7 7 chr4 34572658 34572950 -167755397 - AluSx SINE Alu 0 312 21 12705 118 43 9 chr4 34572950 34573167 -167755180 + Charlie3 DNA MER1_type 1741 1949 -757 3192 149 78 48 chr4 34573271 34573922 -167754425 - Tigger2 DNA MER2_type -2047 671 1 280 284 134 8 chr4 34573933 34574067 -167754280 + MIR SINE MIR 112 262 0 273 278 69 83 chr4 34574087 34574231 -167754116 + MLT1J LTR MaLR 324 465 -46 183 42 0 0 chr4 34575002 34575026 -167753321 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 22 35 0 0 chr4 34575060 34575089 -167753258 + AT_rich Low_complexity Low_complexity 1 29 0 297 20 60 0 chr4 34575115 34575165 -167753182 + (TA)n Simple_repeat Simple_repeat 1 53 0 342 333 65 0 chr4 34576608 34576746 -167751601 + MIR SINE MIR 63 209 -53 265 303 10 20 chr4 34576757 34576856 -167751491 - MIR SINE MIR -79 183 86 807 313 54 38 chr4 34577365 34577845 -167750502 - L2 LINE L2 0 3313 2826 1551 203 24 37 chr4 34577864 34578239 -167750108 - MLT1A2 LTR MaLR -4 370 1 27 0 0 0 chr4 34578895 34578922 -167749425 + AT_rich Low_complexity Low_complexity 1 27 0 197 353 93 22 chr4 34578989 34579128 -167749219 + L2 LINE L2 2894 3042 -230 297 305 160 11 chr4 34579144 34579331 -167749016 - MIR SINE MIR -24 238 24 233 29 29 0 chr4 34579340 34579374 -167748973 + (TA)n Simple_repeat Simple_repeat 2 36 0 254 384 160 4 chr4 34579530 34579767 -167748580 - L3 LINE CR1 -130 1447 1174 206 236 0 28 chr4 34580020 34580092 -167748255 + CT-rich Low_complexity Low_complexity 3 72 0 24 32 0 0 chr4 34580216 34580247 -167748100 + AT_rich Low_complexity Low_complexity 1 31 0 1896 194 20 3 chr4 34580419 34580770 -167747577 - MER47A DNA MER2_type -7 359 3 226 421 22 0 chr4 34580802 34580980 -167747367 - L1MEc LINE L1 -6029 367 186 40 21 0 0 chr4 34581072 34581119 -167747228 + AT_rich Low_complexity Low_complexity 1 47 0 2656 175 4 7 chr4 34581413 34581914 -167746433 - MER44D DNA MER2_type 0 605 1 229 25 0 50 chr4 34581945 34581985 -167746362 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1934 135 3 0 chr4 34582203 34582520 -167745827 - AluSq SINE Alu 0 320 3 180 304 81 68 chr4 34582772 34582920 -167745427 - L2 LINE L2 -994 2320 2171 22 0 0 0 chr4 34583177 34583199 -167745148 + AT_rich Low_complexity Low_complexity 1 22 0 254 331 13 40 chr4 34584211 34584362 -167743985 - L2 LINE L2 -5 3308 3162 43 64 0 0 chr4 34584454 34584532 -167743815 + AT_rich Low_complexity Low_complexity 1 78 0 277 354 73 16 chr4 34584988 34585180 -167743167 - L2 LINE L2 -526 2788 2586 2069 151 31 11 chr4 34585191 34585548 -167742799 - THE1B LTR MaLR 0 364 1 326 106 0 0 chr4 34585819 34585866 -167742481 - L1MA7 LINE L1 -356 5935 5889 1236 204 36 0 chr4 34585868 34586147 -167742200 + L1MA7 LINE L1 5997 6285 -6 271 333 173 41 chr4 34586786 34587203 -167741144 + L2 LINE L2 2842 3313 0 2030 97 35 0 chr4 34587918 34588207 -167740140 + Charlie3 DNA MER1_type 2408 2706 -4 186 43 0 0 chr4 34588590 34588613 -167739734 + (TG)n Simple_repeat Simple_repeat 2 24 0 2442 172 11 15 chr4 34589044 34589504 -167738843 - LTR22A LTR ERVK 0 458 1 5373 96 6 3 chr4 34590060 34591397 -167736950 - L1PA6 LINE L1 0 6154 4753 592 111 0 0 chr4 34591397 34591487 -167736860 - L1PA6 LINE L1 -3247 2899 2810 5828 98 43 5 chr4 34591487 34592665 -167735682 + L1PA10 LINE L1 4949 6168 0 1373 157 63 57 chr4 34592665 34592965 -167735382 - MER44D DNA MER2_type -36 573 2 21 36 0 0 chr4 34594320 34594348 -167733999 + AT_rich Low_complexity Low_complexity 1 28 0 199 277 0 0 chr4 34594918 34594965 -167733382 - MIR SINE MIR -179 83 37 241 121 60 0 chr4 34596269 34596352 -167731995 + (TA)n Simple_repeat Simple_repeat 1 88 0 21 0 0 0 chr4 34596353 34596374 -167731973 + AT_rich Low_complexity Low_complexity 1 21 0 648 197 27 69 chr4 34599469 34599657 -167728690 - MIR SINE MIR -13 249 70 387 250 105 26 chr4 34599898 34600050 -167728297 + LTR16C LTR ERVL 163 326 -165 7982 188 60 19 chr4 34600614 34601377 -167726970 - L1M4c LINE L1 -4575 1809 1079 207 0 0 0 chr4 34601377 34601400 -167726947 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 7982 188 60 19 chr4 34601400 34602356 -167725991 - L1M4c LINE L1 -5305 1079 19 1971 133 136 16 chr4 34605073 34605455 -167722892 + MSTA LTR MaLR 1 428 0 339 290 0 20 chr4 34605530 34605630 -167722717 + MER58A DNA MER1_type 1 98 -9 512 256 135 19 chr4 34605631 34605787 -167722560 + MER96 DNA MER1_type? 1 174 -1 * 578 250 7 0 chr4 34605787 34605918 -167722429 + MER58A DNA MER1_type 90 221 -3 723 291 0 68 chr4 34606145 34606396 -167721951 + MIR SINE MIR 27 260 -2 420 339 70 22 chr4 34607651 34607878 -167720469 - MIR SINE MIR -18 244 7 224 59 29 0 chr4 34608383 34608417 -167719930 + (TTA)n Simple_repeat Simple_repeat 2 36 0 33 25 0 0 chr4 34610653 34610693 -167717654 + AT_rich Low_complexity Low_complexity 1 40 0 1291 231 332 0 chr4 34610942 34611367 -167716980 + MER52A LTR ERV1 1 566 -1189 965 163 54 11 chr4 34611369 34611678 -167716669 - THE1C LTR MaLR -2 373 1 2716 184 47 25 chr4 34611678 34612233 -167716114 + MER52A LTR ERV1 562 1128 -627 700 54 0 0 chr4 34612236 34612348 -167715999 + AluSg/x SINE Alu 217 328 0 2057 120 0 7 chr4 34612675 34612976 -167715371 + AluSg SINE Alu 1 299 -11 2594 29 0 0 chr4 34613046 34613376 -167714971 + L1PA4 LINE L1 5833 6162 0 186 43 0 0 chr4 34613424 34613447 -167714900 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 512 202 95 43 chr4 34614119 34614302 -167714045 + MLT1A2 LTR MaLR 1 188 -186 248 155 0 17 chr4 34614302 34614360 -167713987 + CT-rich Low_complexity Low_complexity 2 58 0 840 226 6 5 chr4 34614367 34614559 -167713788 + MLT1A2 LTR MaLR 188 380 -10 191 232 61 121 chr4 34614678 34614777 -167713570 + MIR SINE MIR 23 115 -147 598 233 0 15 chr4 34615575 34615708 -167712639 + FLAM_A SINE Alu 3 133 0 236 279 0 0 chr4 34616194 34616262 -167712085 + (TA)n Simple_repeat Simple_repeat 2 69 0 22 70 0 0 chr4 34616608 34616651 -167711696 + AT_rich Low_complexity Low_complexity 1 43 0 2538 40 0 0 chr4 34617266 34617563 -167710784 + AluY SINE Alu 1 297 -14 1487 50 0 0 chr4 34617563 34617742 -167710605 + AluY SINE Alu 133 311 0 1155 215 81 29 chr4 34617754 34618217 -167710130 + L1MB8 LINE L1 5169 5849 -335 2404 47 10 3 chr4 34618217 34618514 -167709833 - AluY SINE Alu -12 299 1 1155 215 81 29 chr4 34618514 34618636 -167709711 + L1MB8 LINE L1 5849 5963 -221 894 183 9 144 chr4 34618644 34618977 -167709370 + AluJo SINE Alu 1 288 -24 509 192 93 52 chr4 34618991 34619163 -167709184 + L1MB8 LINE L1 5958 6136 -42 184 277 0 0 chr4 34619485 34619532 -167708815 - MIR SINE MIR -70 192 146 318 344 56 6 chr4 34619546 34619706 -167708641 + MIR SINE MIR 73 240 -22 247 302 11 0 chr4 34619755 34619831 -167708516 - MIR SINE MIR -67 141 71 23 33 0 0 chr4 34620257 34620287 -167708060 + AT_rich Low_complexity Low_complexity 1 30 0 2058 116 0 3 chr4 34620932 34621217 -167707130 + AluSc SINE Alu 9 292 -17 541 128 47 0 chr4 34621835 34621921 -167706426 - AluSg/x SINE Alu -97 215 126 193 343 75 0 chr4 34622148 34622215 -167706132 - L2 LINE L2 -7 3265 3194 35 63 0 0 chr4 34622624 34622687 -167705660 + AT_rich Low_complexity Low_complexity 1 63 0 2111 226 80 24 chr4 34622699 34623405 -167704942 - L1MB8 LINE L1 -6 6983 6318 261 0 0 0 chr4 34623405 34623434 -167704913 + (TA)n Simple_repeat Simple_repeat 2 30 0 2111 226 80 24 chr4 34623434 34623448 -167704899 - L1MB8 LINE L1 -671 6318 6306 2254 89 20 0 chr4 34623448 34623750 -167704597 - AluSx SINE Alu -2 310 3 2111 226 80 24 chr4 34623750 34624163 -167704184 - L1MB8 LINE L1 -683 6306 5918 207 0 0 0 chr4 34624163 34624186 -167704161 + (CA)n Simple_repeat Simple_repeat 2 24 0 2111 226 80 24 chr4 34624186 34624380 -167703967 - L1MB8 LINE L1 -1071 5918 5403 1324 232 70 74 chr4 34624378 34625271 -167703076 - L1MB8 LINE L1 -5057 1798 916 * 1353 219 89 16 chr4 34625433 34625802 -167702545 + MSTD LTR MaLR 1 396 0 486 245 43 20 chr4 34626240 34626397 -167701950 - L1MB8 LINE L1 -6318 537 71 299 363 102 13 chr4 34626458 34626684 -167701663 - L2 LINE L2 -576 2738 2493 5701 171 24 36 chr4 34627197 34627785 -167700562 + Tigger1 DNA MER2_type 2 571 -1847 1552 210 7 7 chr4 34627785 34628076 -167700271 - AluJo SINE Alu -21 291 1 5701 171 24 36 chr4 34628076 34628586 -167699761 + Tigger1 DNA MER2_type 571 1086 -1332 2154 160 5 19 chr4 34628586 34628955 -167699392 - THE1B LTR MaLR 0 364 1 5313 168 14 16 chr4 34628955 34629890 -167698457 + Tigger1 DNA MER2_type 1085 2017 -401 243 308 31 0 chr4 34629955 34630020 -167698327 + LTR50 LTR ERVL 101 167 -628 30 0 0 0 chr4 34630384 34630414 -167697933 + AT_rich Low_complexity Low_complexity 1 30 0 6096 102 8 0 chr4 34630423 34631422 -167696925 - L1PA13 LINE L1 -9 6154 5157 861 168 0 0 chr4 34631424 34631561 -167696786 + Tigger1 DNA MER2_type 2020 2156 -262 1334 186 165 21 chr4 34631704 34632043 -167696304 + MLT1B LTR MaLR 1 388 -2 1951 106 47 33 chr4 34633896 34634197 -167694150 + AluSq SINE Alu 1 305 -8 30 59 0 0 chr4 34635277 34635328 -167693019 + AT_rich Low_complexity Low_complexity 1 51 0 26 82 0 0 chr4 34635420 34635481 -167692866 + AT_rich Low_complexity Low_complexity 1 61 0 6694 180 96 35 chr4 34637051 34638635 -167689712 - MER52A LTR ERV1 0 1755 1 2253 57 0 11 chr4 34638688 34638970 -167689377 + AluY SINE Alu 6 284 -27 30 0 0 0 chr4 34638970 34639000 -167689347 + AT_rich Low_complexity Low_complexity 1 30 0 645 252 25 0 chr4 34639357 34639516 -167688831 + MIR SINE MIR 100 262 0 546 57 0 0 chr4 34639703 34639773 -167688574 + (TA)n Simple_repeat Simple_repeat 2 71 0 28 0 0 0 chr4 34640111 34640139 -167688208 + AT_rich Low_complexity Low_complexity 1 28 0 1549 161 0 0 chr4 34640220 34640456 -167687891 - AluSx SINE Alu -76 236 1 297 348 92 7 chr4 34640591 34640732 -167687615 - MLT1H LTR MaLR 0 595 443 595 259 38 24 chr4 34640793 34641005 -167687342 - MLT1H LTR MaLR -256 293 79 483 379 51 35 chr4 34641706 34642270 -167686077 + ERVL LTR ERVL 1369 1941 -3823 401 294 75 27 chr4 34642382 34642569 -167685778 + LTR33 LTR ERVL 322 517 -4 2036 125 0 13 chr4 34642679 34642982 -167685365 - AluSg SINE Alu -11 299 1 23 0 0 0 chr4 34642992 34643015 -167685332 + AT_rich Low_complexity Low_complexity 1 23 0 9080 175 40 18 chr4 34643890 34645637 -167682710 - Tigger2 DNA MER2_type -934 1784 1 494 272 90 73 chr4 34645856 34645962 -167682385 - MER34 LTR ERV1 0 565 462 2055 115 0 0 chr4 34645962 34646241 -167682106 + AluSc SINE Alu 12 290 -19 494 272 90 73 chr4 34646241 34646696 -167681651 - MER34 LTR ERV1 -103 462 10 23 0 0 0 chr4 34646749 34646772 -167681575 + AT_rich Low_complexity Low_complexity 1 23 0 1780 158 0 0 chr4 34646802 34647067 -167681280 - AluSx SINE Alu -39 273 9 184 362 0 0 chr4 34647337 34647395 -167680952 + MIR3 SINE MIR 114 171 -37 566 328 38 11 chr4 34647874 34648139 -167680208 - LTR16A LTR ERVL -9 441 170 581 321 53 10 chr4 34648687 34648896 -167679451 - MIR SINE MIR -14 248 31 496 288 11 28 chr4 34649284 34649461 -167678886 + Charlie2 DNA MER1_type 35 208 -2574 564 266 51 0 chr4 34649545 34649722 -167678625 + Charlie2 DNA MER1_type 1859 2044 -818 394 234 30 7 chr4 34649853 34650007 -167678340 + MIR SINE MIR 35 164 -98 24 0 0 0 chr4 34650017 34650041 -167678306 + AT_rich Low_complexity Low_complexity 1 24 0 258 136 0 0 chr4 34651055 34651099 -167677248 + (CA)n Simple_repeat Simple_repeat 2 45 0 25 0 0 0 chr4 34651365 34651390 -167676957 + AT_rich Low_complexity Low_complexity 1 25 0 187 379 29 36 chr4 34651883 34652023 -167676324 - MER5A DNA MER1_type -30 159 21 180 208 104 0 chr4 34652110 34652158 -167676189 + L2 LINE L2 3261 3313 0 23 33 0 0 chr4 34652162 34652192 -167676155 + AT_rich Low_complexity Low_complexity 1 30 0 195 42 0 0 chr4 34652947 34652971 -167675376 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 28 48 0 0 chr4 34654553 34654595 -167673752 + AT_rich Low_complexity Low_complexity 1 42 0 296 291 149 21 chr4 34654695 34654836 -167673511 - MER5B DNA MER1_type -16 162 4 24 0 0 0 chr4 34654902 34654926 -167673421 + AT_rich Low_complexity Low_complexity 1 24 0 180 354 0 24 chr4 34656415 34656497 -167671850 - L2 LINE L2 -583 2731 2652 222 333 30 20 chr4 34656782 34656881 -167671466 + MER5A DNA MER1_type 4 103 -86 344 351 147 32 chr4 34656931 34657467 -167670880 - L2 LINE L2 -962 2352 1755 754 269 155 25 chr4 34657483 34657890 -167670457 + MLT1F1 LTR MaLR 1 490 -77 278 111 0 0 chr4 34657897 34657933 -167670414 + U2 snRNA snRNA 1 36 -152 258 32 0 0 chr4 34657949 34657980 -167670367 + (TG)n Simple_repeat Simple_repeat 2 32 0 1468 214 27 27 chr4 34658519 34658867 -167669480 + MLT2D LTR ERVL 69 414 0 400 298 127 0 chr4 34659239 34659444 -167668903 + MLT1F1 LTR MaLR 301 531 -36 443 381 60 18 chr4 34659679 34660115 -167668232 - L2 LINE L2 -1432 1882 1429 1826 199 64 15 chr4 34660219 34660627 -167667720 - MSTA LTR MaLR 0 428 1 1582 113 0 0 chr4 34660906 34661118 -167667229 + AluSq SINE Alu 87 298 -15 30 59 0 0 chr4 34661606 34661657 -167666690 + AT_rich Low_complexity Low_complexity 1 51 0 308 350 108 10 chr4 34662188 34662382 -167665965 - L1ME2 LINE L1 -227 5937 5725 262 333 76 0 chr4 34662462 34662594 -167665753 - L1ME2 LINE L1 -481 5689 5548 3040 83 2 0 chr4 34662833 34663267 -167665080 + L1PA8 LINE L1 5745 6179 0 29 28 0 0 chr4 34663326 34663362 -167664985 + AT_rich Low_complexity Low_complexity 1 36 0 30 59 0 0 chr4 34665261 34665312 -167663035 + AT_rich Low_complexity Low_complexity 1 51 0 348 64 0 0 chr4 34666220 34666267 -167662080 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 54 0 0 chr4 34666549 34666586 -167661761 + AT_rich Low_complexity Low_complexity 1 37 0 270 0 0 0 chr4 34666666 34666696 -167661651 + (CA)n Simple_repeat Simple_repeat 2 31 0 835 252 99 38 chr4 34666737 34667130 -167661217 + MER110A LTR ERV1 43 459 -9 3297 105 39 4 chr4 34667392 34667886 -167660461 + MER9 LTR ERVK 1 511 0 200 200 0 0 chr4 34668007 34668042 -167660305 + A-rich Low_complexity Low_complexity 2 36 0 226 265 73 0 chr4 34668453 34668521 -167659826 + MIR SINE MIR 179 251 -11 190 338 70 0 chr4 34668820 34668891 -167659456 + MIR SINE MIR 48 123 -139 232 311 76 0 chr4 34668905 34669024 -167659323 + MIR SINE MIR 91 218 -44 327 98 39 0 chr4 34669150 34669201 -167659146 - MADE1 DNA Mariner -27 53 1 39 0 0 0 chr4 34669209 34669248 -167659099 + AT_rich Low_complexity Low_complexity 1 39 0 391 298 23 0 chr4 34669908 34670039 -167658308 - MLT1E2 LTR MaLR 0 626 493 290 120 20 0 chr4 34670016 34670066 -167658281 - MLT1D LTR MaLR -398 107 57 * 225 0 0 0 chr4 34670252 34670277 -167658070 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 57 0 0 chr4 34670305 34670340 -167658007 + AT_rich Low_complexity Low_complexity 1 35 0 1560 106 0 26 chr4 34671747 34671974 -167656373 - AluSq SINE Alu -8 305 85 1189 107 6 0 chr4 34671974 34672133 -167656214 - AluSp SINE Alu -148 165 6 23 33 0 0 chr4 34672868 34672898 -167655449 + AT_rich Low_complexity Low_complexity 1 30 0 242 231 62 0 chr4 34673125 34673190 -167655157 - MLT1J2 LTR MaLR -315 135 67 1834 257 49 40 chr4 34673634 34674202 -167654145 + MLT1E2 LTR MaLR 53 625 -1 859 363 127 15 chr4 34674241 34674882 -167653465 + L2 LINE L2 2593 3308 -5 26 0 0 0 chr4 34677408 34677434 -167650913 + AT_rich Low_complexity Low_complexity 1 26 0 318 318 52 79 chr4 34678113 34678443 -167649904 - L1ME LINE L1 -5194 876 556 22 0 0 0 chr4 34678981 34679003 -167649344 + AT_rich Low_complexity Low_complexity 1 22 0 1756 205 58 10 chr4 34679484 34679521 -167648826 - MLT2D LTR ERVL 0 414 380 258 32 0 0 chr4 34679521 34679552 -167648795 + (GA)n Simple_repeat Simple_repeat 2 32 0 1756 205 58 10 chr4 34679552 34679909 -167648438 - MLT2D LTR ERVL -34 380 1 559 195 82 63 chr4 34679938 34680112 -167648235 + MLT1E LTR MaLR 425 593 0 21 57 0 0 chr4 34680630 34680665 -167647682 + AT_rich Low_complexity Low_complexity 1 35 0 232 211 18 0 chr4 34680921 34680978 -167647369 + (TA)n Simple_repeat Simple_repeat 1 58 0 284 164 33 0 chr4 34680995 34681056 -167647291 + CT-rich Low_complexity Low_complexity 3 65 0 312 172 47 0 chr4 34681076 34681140 -167647207 - FLAM_A SINE Alu 0 133 67 207 211 18 0 chr4 34681143 34681200 -167647147 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 275 65 22 0 chr4 34681216 34681262 -167647085 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 650 285 62 0 chr4 34681870 34682063 -167646284 + MER20 DNA MER1_type 11 215 -4 21 36 0 0 chr4 34682126 34682154 -167646193 + AT_rich Low_complexity Low_complexity 1 28 0 191 279 98 0 chr4 34682926 34682987 -167645360 + L2 LINE L2 3168 3234 -38 1215 187 6 103 chr4 34683087 34683418 -167644929 - AluJo SINE Alu -3 299 1 248 155 0 17 chr4 34683948 34684006 -167644341 + (TA)n Simple_repeat Simple_repeat 2 58 0 232 352 6 7 chr4 34685678 34685870 -167642477 - MIR SINE MIR -9 253 39 2016 103 0 7 chr4 34687263 34687545 -167640802 + AluSx SINE Alu 1 280 -32 258 32 0 0 chr4 34687547 34687578 -167640769 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 385 302 85 38 chr4 34688454 34688689 -167639658 - MIR SINE MIR -2 260 15 1992 112 42 0 chr4 34688723 34689009 -167639338 + AluSq SINE Alu 1 298 -15 210 356 11 0 chr4 34689328 34689415 -167638932 + L2 LINE L2 3182 3269 -44 243 0 0 0 chr4 34689422 34689449 -167638898 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr4 34691493 34691515 -167636832 + AT_rich Low_complexity Low_complexity 1 22 0 199 293 9 57 chr4 34691737 34691843 -167636504 - MIR SINE MIR -2 260 160 979 126 7 0 chr4 34692382 34692533 -167635814 - AluSg/x SINE Alu -14 296 145 1228 266 84 53 chr4 34693004 34693530 -167634817 - MLT1H LTR MaLR 0 549 8 31 0 0 0 chr4 34693844 34693875 -167634472 + AT_rich Low_complexity Low_complexity 1 31 0 568 261 137 14 chr4 34694006 34694217 -167634130 + L1ME3A LINE L1 5842 6078 -92 1906 214 137 80 chr4 34694224 34695054 -167633293 - LTR28 LTR ERV1 0 1020 1 392 284 37 43 chr4 34695139 34695271 -167633076 + L1MEd LINE L1 947 1079 -5040 3575 111 0 4 chr4 34695271 34695784 -167632563 - MER9 LTR ERVK 0 511 1 392 284 37 43 chr4 34695784 34695813 -167632534 + L1MEd LINE L1 1079 1107 -5012 296 279 0 0 chr4 34695868 34695936 -167632411 + MLT1H LTR MaLR 109 176 -373 249 57 0 0 chr4 34696206 34696241 -167632106 + (T)n Simple_repeat Simple_repeat 1 35 0 2061 140 0 0 chr4 34696476 34696776 -167631571 + AluSx SINE Alu 1 300 -12 303 239 184 0 chr4 34696877 34696986 -167631361 + MLT1H LTR MaLR 421 549 0 533 336 126 40 chr4 34697443 34697751 -167630596 + L2 LINE L2 2795 3162 -151 1955 223 104 77 chr4 34697751 34698555 -167629792 - LTR1B LTR ERV1 0 826 1 533 336 126 40 chr4 34698555 34698722 -167629625 + L2 LINE L2 3162 3313 0 345 314 77 24 chr4 34698806 34698975 -167629372 - MLT1I LTR MaLR -119 290 113 251 250 56 0 chr4 34699157 34699229 -167629118 + MIR SINE MIR 159 234 -28 1491 181 26 13 chr4 34701603 34701912 -167626435 + L1MA7 LINE L1 5461 5773 -518 373 228 114 33 chr4 34701917 34702101 -167626246 + L1MA7 LINE L1 6107 6299 -1 3973 75 6 6 chr4 34702161 34702709 -167625638 + L1PA7 LINE L1 5607 6154 0 21 0 0 0 chr4 34704060 34704081 -167624266 + AT_rich Low_complexity Low_complexity 1 21 0 2167 120 3 0 chr4 34704936 34705236 -167623111 + AluSg SINE Alu 1 301 -9 2068 240 89 52 chr4 34705340 34705558 -167622789 + L1M4 LINE L1 4309 4518 -1628 3840 108 86 18 chr4 34705558 34706176 -167622171 - PABL_A LTR ERV1 0 660 1 2068 240 89 52 chr4 34706176 34706973 -167621374 + L1M4 LINE L1 4518 5361 -785 1941 136 4 0 chr4 34707098 34707398 -167620949 - AluSx SINE Alu 0 301 1 265 321 103 6 chr4 34709444 34709609 -167618738 - MIR SINE MIR -50 212 32 210 37 0 0 chr4 34710789 34710816 -167617531 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 767 170 71 7 chr4 34711148 34711183 -167617164 - MLT2B3 LTR ERVL 0 554 523 536 53 32 21 chr4 34711183 34711277 -167617070 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 767 170 71 7 chr4 34711277 34711382 -167616965 - MLT2B3 LTR ERVL -31 523 405 2016 178 63 5 chr4 34712012 34712375 -167615972 - LOR1b LTR ERV1 0 461 72 1511 192 6 28 chr4 34712375 34712692 -167615655 - AluJo SINE Alu -2 310 1 2016 178 63 5 chr4 34712692 34712727 -167615620 - LOR1b LTR ERV1 -389 72 40 1924 138 3 3 chr4 34713976 34714292 -167614055 - AluSx SINE Alu 0 316 1 24 67 0 0 chr4 34714582 34714627 -167613720 + AT_rich Low_complexity Low_complexity 1 45 0 263 281 53 26 chr4 34714784 34714898 -167613449 - MIR SINE MIR -12 250 134 24 0 0 0 chr4 34714898 34714922 -167613425 + AT_rich Low_complexity Low_complexity 1 24 0 218 367 20 0 chr4 34716021 34716119 -167612228 - L2 LINE L2 -10 3262 3163 1895 169 0 0 chr4 34716605 34716907 -167611440 - AluSx SINE Alu -10 302 1 641 126 51 15 chr4 34717841 34718104 -167610243 + (TA)n Simple_repeat Simple_repeat 1 272 0 459 52 0 0 chr4 34718104 34718162 -167610185 + (CA)n Simple_repeat Simple_repeat 2 59 0 408 200 24 0 chr4 34718162 34718247 -167610100 + Tigger5 DNA MER2_type 6 92 -2231 450 156 39 0 chr4 34718284 34718361 -167609986 + Tigger5 DNA MER2_type 2244 2323 0 392 301 72 98 chr4 34718444 34718570 -167609777 + L1ME3 LINE L1 1083 1211 -5185 1979 139 0 17 chr4 34718570 34718871 -167609476 + AluSx SINE Alu 1 296 -16 392 301 72 98 chr4 34718871 34719343 -167609004 + L1ME3 LINE L1 1211 1665 -4731 1405 172 89 46 chr4 34719384 34719733 -167608614 - THE1B LTR MaLR 0 364 1 2034 150 3 0 chr4 34719766 34720072 -167608275 + AluSx SINE Alu 1 307 -5 346 299 72 46 chr4 34720440 34720791 -167607556 + L1ME3 LINE L1 4735 5094 -1121 966 193 64 0 chr4 34720794 34720981 -167607366 + MER2 DNA MER2_type 1 199 -146 602 259 104 16 chr4 34721221 34721592 -167606755 + L1ME3 LINE L1 5254 5665 -574 2175 141 19 19 chr4 34721630 34721992 -167606355 + THE1B LTR MaLR 1 362 -2 11297 100 14 1 chr4 34721994 34723554 -167604793 + THE1B-int LTR MaLR 1 1580 0 2168 147 11 31 chr4 34723554 34723914 -167604433 + THE1B LTR MaLR 1 353 -11 395 284 114 25 chr4 34723914 34724179 -167604168 + L1ME3 LINE L1 5872 6173 -58 1209 219 115 0 chr4 34724179 34724448 -167603899 + AluJb SINE Alu 1 300 -12 395 284 114 25 chr4 34724448 34724506 -167603841 + L1ME3 LINE L1 6173 6224 -7 504 333 95 30 chr4 34724772 34725171 -167603176 + L1ME2 LINE L1 4557 4981 -1165 48 102 0 0 chr4 34725356 34725523 -167602824 + AT_rich Low_complexity Low_complexity 1 167 0 189 0 0 0 chr4 34725624 34725645 -167602702 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 4154 202 75 13 chr4 34725900 34726926 -167601421 - L1MC2 LINE L1 -1 6761 5672 1682 208 32 2 chr4 34726939 34727347 -167601000 - L1MC2 LINE L1 -5179 1385 966 1216 269 138 41 chr4 34727355 34728104 -167600243 - L1MC2 LINE L1 -5147 903 184 1622 150 3 77 chr4 34728107 34728480 -167599867 - MER4A LTR ERV1 0 664 261 540 141 10 20 chr4 34728480 34728579 -167599768 - MER4A LTR ERV1 -566 98 1 565 210 21 21 chr4 34728579 34728722 -167599625 - L1MC2 LINE L1 -6267 297 155 2078 106 0 18 chr4 34729308 34729644 -167598703 + AluSc SINE Alu 5 335 0 2130 125 0 13 chr4 34730386 34730697 -167597650 + AluSx SINE Alu 6 312 0 1268 271 127 27 chr4 34730793 34731532 -167596815 + L1ME2 LINE L1 5296 6143 -21 561 268 27 16 chr4 34731642 34731825 -167596522 + L2 LINE L2 1521 1705 -1609 731 320 144 16 chr4 34731937 34732724 -167595623 + L2 LINE L2 2423 3311 -2 34 72 0 0 chr4 34732989 34733058 -167595289 + AT_rich Low_complexity Low_complexity 1 69 0 23 54 0 0 chr4 34733135 34733172 -167595175 + AT_rich Low_complexity Low_complexity 1 37 0 1546 208 53 17 chr4 34734361 34734722 -167593625 + MLT2D LTR ERVL 1 374 -40 1554 338 45 45 chr4 34735367 34736209 -167592138 - ERVL LTR ERVL -1323 4441 3597 2366 133 14 6 chr4 34736209 34736569 -167591778 + THE1B LTR MaLR 1 363 -1 1554 338 45 45 chr4 34736569 34736949 -167591398 - ERVL LTR ERVL -2166 3598 3219 29 28 0 0 chr4 34736958 34736994 -167591353 + AT_rich Low_complexity Low_complexity 1 36 0 835 342 69 14 chr4 34737038 34737626 -167590721 - ERVL LTR ERVL -1964 3032 2422 853 332 49 30 chr4 34738278 34738887 -167589460 - ERVL LTR ERVL -3393 1603 983 1251 231 43 12 chr4 34739304 34739720 -167588627 - Charlie1 DNA MER1_type -6 2755 2327 6482 190 138 26 chr4 34739809 34741320 -167587027 - MER52A LTR ERV1 0 1755 1 665 264 83 85 chr4 34741340 34741775 -167586572 - L2 LINE L2 -1266 2048 1615 2093 155 22 14 chr4 34744563 34744931 -167583416 + MER83C LTR ERV1 3 373 0 3419 268 63 57 chr4 34744988 34747035 -167581312 + MER83C-int LTR ERV1 47 1884 -3070 1505 317 51 41 chr4 34747743 34748833 -167579514 + MER83C-int LTR ERV1 2796 3896 -1058 280 345 0 0 chr4 34749235 34749345 -167579002 + MER83C-int LTR ERV1 6922 7031 -688 2075 246 14 20 chr4 34749546 34750206 -167578141 + MER83C-int LTR ERV1 4525 4862 -18 1849 186 21 37 chr4 34750220 34750597 -167577750 + MER83C LTR ERV1 3 373 0 27 29 0 0 chr4 34750765 34750799 -167577548 + AT_rich Low_complexity Low_complexity 1 34 0 1886 248 55 65 chr4 34750835 34751432 -167576915 - MER77 LTR ERV1 -9 596 6 862 139 0 28 chr4 34751925 34752069 -167576278 + MER50 LTR ERV1 2 141 -593 * 3372 166 12 8 chr4 34752056 34752642 -167575705 + HSMAR2 DNA Mariner 714 1301 -1 1248 227 47 65 chr4 34752741 34753253 -167575094 - MLT1D LTR MaLR -1 504 2 28 71 0 0 chr4 34754835 34754891 -167573456 + AT_rich Low_complexity Low_complexity 1 56 0 225 175 18 18 chr4 34757277 34757334 -167571013 - Charlie7 DNA MER1_type -2509 103 47 234 224 0 17 chr4 34757774 34757832 -167570515 - MIR SINE MIR -110 152 96 420 353 52 13 chr4 34757973 34758205 -167570142 + MIR SINE MIR 4 244 -18 27 49 0 0 chr4 34759945 34759986 -167568361 + AT_rich Low_complexity Low_complexity 1 41 0 253 206 32 0 chr4 34760153 34760216 -167568131 + (TA)n Simple_repeat Simple_repeat 1 65 0 449 103 0 51 chr4 34760315 34760393 -167567954 + MADE1 DNA Mariner 7 80 0 30 27 0 0 chr4 34760533 34760570 -167567777 + AT_rich Low_complexity Low_complexity 1 37 0 192 77 0 0 chr4 34761408 34761434 -167566913 + (TAA)n Simple_repeat Simple_repeat 2 27 0 3007 159 53 77 chr4 34761485 34762215 -167566132 + MER4D-int LTR ERV1 6046 6758 0 2278 157 13 14 chr4 34762215 34762967 -167565380 + MER4D LTR ERV1 1 751 -28 209 333 74 37 chr4 34763390 34763552 -167564795 + L2 LINE L2 2580 2747 -567 1199 250 72 32 chr4 34764276 34764372 -167563975 + MLT1D LTR MaLR 113 204 -301 2235 97 0 3 chr4 34764372 34764670 -167563677 + AluSx SINE Alu 1 297 -15 1199 250 72 32 chr4 34764670 34764949 -167563398 + MLT1D LTR MaLR 204 503 -2 21 36 0 0 chr4 34765067 34765095 -167563252 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 34765520 34765542 -167562805 + AT_rich Low_complexity Low_complexity 1 22 0 270 179 0 0 chr4 34767099 34767155 -167561192 + (TA)n Simple_repeat Simple_repeat 2 57 0 311 292 11 0 chr4 34767155 34767244 -167561103 + L1MC4 LINE L1 6614 6703 -1339 239 255 0 43 chr4 34767246 34767340 -167561007 - L1MC4 LINE L1 -1339 6703 6614 234 160 75 53 chr4 34767349 34767443 -167560904 + L1MCa LINE L1 2006 2101 -4325 949 204 0 15 chr4 34767682 34767878 -167560469 + L1MA9 LINE L1 1 193 -6837 2472 230 28 4 chr4 34767901 34768815 -167559532 + L1MA9 LINE L1 5655 6594 -678 1746 216 115 0 chr4 34768831 34769275 -167559072 + L1MA9 LINE L1 6778 7272 0 320 291 71 100 chr4 34769304 34769685 -167558662 + L1M4 LINE L1 4796 5165 -981 43 35 0 0 chr4 34769654 34769711 -167558636 + AT_rich Low_complexity Low_complexity 1 57 0 * 22 0 0 0 chr4 34770477 34770499 -167557848 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 34770660 34770683 -167557664 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 34771869 34771897 -167556450 + AT_rich Low_complexity Low_complexity 1 28 0 209 371 42 11 chr4 34773145 34773297 -167555050 + MIR SINE MIR 3 155 -69 3241 171 4 0 chr4 34773307 34773832 -167554515 - MER1A DNA MER1_type 0 527 1 1469 122 27 9 chr4 34773928 34774150 -167554197 + MER30 DNA MER1_type 5 230 0 25 51 0 0 chr4 34774160 34774199 -167554148 + AT_rich Low_complexity Low_complexity 1 39 0 210 300 0 0 chr4 34776359 34776429 -167551918 + GA-rich Low_complexity Low_complexity 3 72 0 345 309 39 85 chr4 34777405 34777664 -167550683 - MLT1I LTR MaLR -18 391 145 22 0 0 0 chr4 34779741 34779763 -167548584 + AT_rich Low_complexity Low_complexity 1 22 0 5102 184 26 18 chr4 34779842 34780527 -167547820 - L1MA9 LINE L1 -6 6306 5628 237 108 0 0 chr4 34780527 34780564 -167547783 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2210 82 0 0 chr4 34780564 34780845 -167547502 - AluSc SINE Alu -28 281 1 5102 184 26 18 chr4 34780845 34781687 -167546660 - L1MA9 LINE L1 -683 5629 4766 25 0 0 0 chr4 34781778 34781803 -167546544 + AT_rich Low_complexity Low_complexity 1 25 0 435 201 18 0 chr4 34781826 34781990 -167546357 + (TA)n Simple_repeat Simple_repeat 2 168 0 236 154 0 0 chr4 34782002 34782041 -167546306 + MADE1 DNA Mariner 1 39 -41 1288 167 53 0 chr4 34782042 34782288 -167546059 + L1M2 LINE L1 5379 5637 -675 261 0 0 0 chr4 34782338 34782367 -167545980 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 42229 32 24 1 chr4 34782372 34788377 -167539970 - L1PA2 LINE L1 -13 6142 1 23 0 0 0 chr4 34789047 34789070 -167539277 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 34789439 34789467 -167538880 + AT_rich Low_complexity Low_complexity 1 28 0 1622 185 62 3 chr4 34789764 34790089 -167538258 - MER2 DNA MER2_type 0 344 1 188 278 74 0 chr4 34790968 34791022 -167537325 + MER5C DNA MER1_type 34 91 -233 23 0 0 0 chr4 34791777 34791800 -167536547 + AT_rich Low_complexity Low_complexity 1 23 0 297 0 0 0 chr4 34791842 34791875 -167536472 + (CA)n Simple_repeat Simple_repeat 2 34 0 483 281 66 28 chr4 34792250 34792546 -167535801 - L1MDa LINE L1 -3824 2716 2417 324 329 119 30 chr4 34793041 34793336 -167535011 - L1MDa LINE L1 -4821 1900 1580 22 70 0 0 chr4 34793424 34793467 -167534880 + AT_rich Low_complexity Low_complexity 1 43 0 29 60 0 0 chr4 34793518 34793568 -167534779 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr4 34793734 34793755 -167534592 + AT_rich Low_complexity Low_complexity 1 21 0 287 236 110 39 chr4 34793901 34794028 -167534319 - MLT1J1 LTR MaLR -233 213 78 216 0 0 0 chr4 34794795 34794819 -167533528 + (TA)n Simple_repeat Simple_repeat 2 25 0 697 301 65 86 chr4 34795826 34796382 -167531965 - L2 LINE L2 -8 3305 2764 731 256 33 22 chr4 34796572 34796842 -167531505 - L1ME1 LINE L1 -206 5960 5688 228 185 31 0 chr4 34797078 34797143 -167531204 - L1ME1 LINE L1 -947 5199 5133 13478 147 34 3 chr4 34797143 34799396 -167528951 - Tigger1 DNA MER2_type 0 2418 96 940 297 76 13 chr4 34799406 34799959 -167528388 - L1ME1 LINE L1 -2156 3990 3403 622 274 79 13 chr4 34800044 34800361 -167527986 - L1ME1 LINE L1 -3460 2686 2349 788 299 91 40 chr4 34801249 34801624 -167526723 + L2 LINE L2 2383 2776 -538 615 277 7 0 chr4 34801735 34801876 -167526471 + Tigger3(Golem) DNA MER2_type 2 143 -2886 * 1357 191 20 0 chr4 34801872 34802124 -167526223 + Tigger3(Golem) DNA MER2_type 2771 3027 -2 619 316 65 37 chr4 34802126 34802481 -167525866 + L2 LINE L2 2941 3305 -8 345 100 0 0 chr4 34803374 34803424 -167524923 + (TA)n Simple_repeat Simple_repeat 1 50 0 2356 85 0 0 chr4 34803424 34803729 -167524618 - AluY SINE Alu -6 305 1 2198 82 0 7 chr4 34803990 34804281 -167524066 + AluY SINE Alu 5 293 -18 1389 248 17 36 chr4 34805397 34805797 -167522550 - MSTD LTR MaLR -1 370 1 2096 90 46 3 chr4 34806000 34806457 -167521890 - L1ME LINE L1 -632 5532 5075 3519 75 4 8 chr4 34806457 34806932 -167521415 + L1PA7 LINE L1 5666 6143 -11 23 86 0 0 chr4 34807252 34807310 -167521037 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr4 34807412 34807433 -167520914 + AT_rich Low_complexity Low_complexity 1 21 0 227 278 0 100 chr4 34807801 34807891 -167520456 - L2 LINE L2 -2 3311 3231 378 59 0 0 chr4 34808129 34808180 -167520167 - MADE1 DNA Mariner 0 80 30 863 291 55 36 chr4 34809566 34810040 -167518307 - L1MEc LINE L1 -3087 3128 2646 603 288 58 40 chr4 34810076 34810712 -167517635 - L1MEc LINE L1 -3690 2525 1925 593 286 113 10 chr4 34810736 34811037 -167517310 + L1M4 LINE L1 3750 4081 -2065 515 230 184 0 chr4 34811458 34811610 -167516737 - LTR16A LTR ERVL -34 416 237 691 265 48 24 chr4 34811648 34811897 -167516450 + L1ME1 LINE L1 5904 6158 -8 208 378 37 0 chr4 34812335 34812417 -167515930 - MER5A DNA MER1_type -77 112 28 224 209 0 0 chr4 34812568 34812611 -167515736 + (CA)n Simple_repeat Simple_repeat 2 44 0 1177 187 27 42 chr4 34813070 34813332 -167515015 + AluJb SINE Alu 1 258 -54 2329 47 40 7 chr4 34813332 34813629 -167514718 + AluYa5 SINE Alu 1 307 -4 3425 157 25 8 chr4 34813941 34814541 -167513806 + L1PA15 LINE L1 5556 6165 0 869 165 81 64 chr4 34815045 34815281 -167513066 + L1MA9 LINE L1 6036 6275 -37 1600 258 68 16 chr4 34815591 34816102 -167512245 - MLT1F LTR MaLR 0 542 5 771 155 0 0 chr4 34816746 34816875 -167511472 + L1PA16 LINE L1 6029 6157 -9 22 0 0 0 chr4 34818305 34818327 -167510020 + AT_rich Low_complexity Low_complexity 1 22 0 940 335 22 11 chr4 34818403 34818773 -167509574 + LTR16A LTR ERVL 1 374 -76 462 114 0 0 chr4 34820963 34821033 -167507314 + (TG)n Simple_repeat Simple_repeat 2 71 0 300 188 0 0 chr4 34821033 34821102 -167507245 + (TA)n Simple_repeat Simple_repeat 2 70 0 306 294 0 22 chr4 34821109 34821201 -167507146 + L1MC4 LINE L1 6614 6703 -1339 212 216 20 0 chr4 34821201 34821252 -167507095 + (TA)n Simple_repeat Simple_repeat 2 53 0 214 267 17 0 chr4 34821519 34821579 -167506768 + (CATA)n Simple_repeat Simple_repeat 2 62 0 252 263 100 0 chr4 34821583 34821663 -167506684 - L1MC4 LINE L1 -1340 6702 6615 182 167 0 24 chr4 34821664 34821706 -167506641 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 337 272 0 22 chr4 34821707 34821799 -167506548 - L1MC4 LINE L1 -1339 6703 6614 32 101 0 0 chr4 34822008 34822117 -167506230 + AT_rich Low_complexity Low_complexity 1 109 0 397 327 18 6 chr4 34822258 34822423 -167505924 + L1MEc LINE L1 38 204 -6192 394 293 79 12 chr4 34822456 34822620 -167505727 + L1MEc LINE L1 282 456 -5940 1491 275 85 30 chr4 34822733 34824459 -167503888 + L1MEc LINE L1 1000 2784 -3431 236 228 0 25 chr4 34824627 34824706 -167503641 + (TA)n Simple_repeat Simple_repeat 1 77 0 24 0 0 0 chr4 34825725 34825749 -167502598 + AT_rich Low_complexity Low_complexity 1 24 0 300 111 0 0 chr4 34826270 34826324 -167502023 + (GA)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr4 34827321 34827342 -167501005 + AT_rich Low_complexity Low_complexity 1 21 0 244 273 108 45 chr4 34827362 34827538 -167500809 - MIR SINE MIR 0 262 76 1047 220 5 0 chr4 34827600 34827809 -167500538 - MER6B DNA MER2_type 0 210 1 205 231 0 19 chr4 34827809 34827861 -167500486 + (TA)n Simple_repeat Simple_repeat 1 51 0 233 284 75 0 chr4 34828274 34828341 -167500006 + L2 LINE L2 3215 3286 -27 243 200 0 29 chr4 34828440 34828510 -167499837 + LTR66 LTR ERVL 379 446 -164 291 286 0 0 chr4 34828514 34828598 -167499749 + (TA)n Simple_repeat Simple_repeat 2 85 0 461 32 32 0 chr4 34828855 34828917 -167499430 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 595 180 0 9 chr4 34828944 34829055 -167499292 + MSTA LTR MaLR 1 110 -318 1481 225 56 5 chr4 34829057 34829470 -167498877 - L1 LINE L1 -849 5297 4864 270 0 0 0 chr4 34829490 34829520 -167498827 + (CA)n Simple_repeat Simple_repeat 2 31 0 232 235 176 0 chr4 34829523 34829625 -167498722 + L1MA9 LINE L1 6170 6289 -23 230 222 86 12 chr4 34829632 34829713 -167498634 + L1MA9 LINE L1 6226 6312 0 * 320 238 24 92 chr4 34829709 34829915 -167498432 + L1MC/D LINE L1 5283 5474 -2334 311 363 76 13 chr4 34829941 34830178 -167498169 + L1MC/D LINE L1 5575 5826 -1982 22 0 0 0 chr4 34830467 34830489 -167497858 + AT_rich Low_complexity Low_complexity 1 22 0 365 267 104 40 chr4 34830636 34830838 -167497509 + L1ME3A LINE L1 5264 5478 -2330 21933 132 19 80 chr4 34831072 34835520 -167492827 + L1PA7 LINE L1 12 4187 -1959 6730 72 9 2 chr4 34835520 34837092 -167491255 + L1PA7 LINE L1 4566 6151 -3 2146 119 3 0 chr4 34837423 34837726 -167490621 - AluSq SINE Alu -9 304 1 306 349 30 25 chr4 34837806 34838004 -167490343 + L1ME3A LINE L1 5746 5944 -226 21 0 0 0 chr4 34838700 34838721 -167489626 + AT_rich Low_complexity Low_complexity 1 21 0 9049 217 33 46 chr4 34838721 34842319 -167486028 - L1MA9 LINE L1 -41 7690 4129 750 174 11 37 chr4 34842316 34842506 -167485841 - L1MA9 LINE L1 -3899 3666 3482 * 2049 141 22 33 chr4 34842542 34842910 -167485437 - THE1B LTR MaLR 0 364 1 648 249 23 80 chr4 34843133 34843473 -167484874 - L1MA9 LINE L1 -4167 3399 2835 2982 201 35 13 chr4 34843473 34844079 -167484268 + Tigger7 DNA MER2_type 1 619 -1868 1368 146 49 8 chr4 34844074 34844321 -167484026 + Tigger7 DNA MER2_type 2235 2491 0 * 2237 208 59 17 chr4 34844321 34845099 -167483248 - L1M4c LINE L1 -4466 2702 1757 371 351 50 59 chr4 34845095 34845536 -167482811 - L1M4c LINE L1 -5648 1520 1084 * 840 327 88 73 chr4 34845547 34846217 -167482130 - L1M4c LINE L1 -5902 1266 587 247 222 0 0 chr4 34846282 34846327 -167482020 - L1M4c LINE L1 -6782 386 342 645 238 20 0 chr4 34846383 34846530 -167481817 + Ricksha DNA DNA 1 150 -1104 286 159 0 48 chr4 34846522 34846585 -167481762 + ERVL LTR ERVL 5643 5702 -62 * 6892 183 57 24 chr4 34846578 34847890 -167480457 + Ricksha DNA DNA 1690 3025 -236 1783 147 61 31 chr4 34847890 34848250 -167480097 + THE1C LTR MaLR 1 371 -4 6892 183 57 24 chr4 34848250 34848482 -167479865 + Ricksha DNA DNA 3025 3248 -13 755 303 6 64 chr4 34848488 34848815 -167479532 - L1M4c LINE L1 -6857 311 4 27 29 0 0 chr4 34849222 34849256 -167479091 + AT_rich Low_complexity Low_complexity 1 34 0 253 315 162 0 chr4 34849536 34849647 -167478700 + MLT1J2 LTR MaLR 12 140 -310 2047 128 3 0 chr4 34849909 34850205 -167478142 + AluSx SINE Alu 1 297 -15 390 21 0 0 chr4 34850291 34850338 -167478009 + (TG)n Simple_repeat Simple_repeat 2 48 0 28 0 0 0 chr4 34850508 34850536 -167477811 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr4 34851656 34851690 -167476657 + AT_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chr4 34851826 34851855 -167476492 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr4 34852277 34852314 -167476033 + AT_rich Low_complexity Low_complexity 1 37 0 402 21 0 0 chr4 34852344 34852391 -167475956 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 2147 156 37 32 chr4 34852620 34853168 -167475179 - MLT2A2 LTR ERVL 0 554 1 21 0 0 0 chr4 34853450 34853471 -167474876 + AT_rich Low_complexity Low_complexity 1 21 0 300 163 10 20 chr4 34853693 34853791 -167474556 + (TA)n Simple_repeat Simple_repeat 2 98 0 851 200 0 27 chr4 34853915 34854100 -167474247 - L1PA13 LINE L1 -3 6160 5981 6381 193 54 11 chr4 34854102 34855795 -167472552 + L1PA13 LINE L1 1243 3081 -3716 411 314 86 59 chr4 34855930 34856220 -167472127 - L2 LINE L2 -5 3308 3011 21 0 0 0 chr4 34856354 34856375 -167471972 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 34856991 34857019 -167471328 + AT_rich Low_complexity Low_complexity 1 28 0 765 354 49 15 chr4 34857819 34858410 -167469937 - L2 LINE L2 -20 3293 2680 198 324 40 14 chr4 34859240 34859314 -167469033 + MIR SINE MIR 110 185 -77 24 0 0 0 chr4 34859626 34859650 -167468697 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr4 34860108 34860139 -167468208 + AT_rich Low_complexity Low_complexity 1 31 0 193 291 0 36 chr4 34911126 34911181 -167417166 - L2 LINE L2 -9 3304 3252 1692 224 141 52 chr4 34911232 34911862 -167416485 + MER76 LTR ERV 1 686 -2 1954 129 27 0 chr4 34912409 34912704 -167415643 - AluSq SINE Alu -10 303 1 274 332 62 70 chr4 34913441 34913911 -167414436 - MLT1K LTR MaLR -31 557 92 544 327 39 10 chr4 34914767 34914972 -167413375 + MIR SINE MIR 11 221 -41 31 82 0 0 chr4 34915412 34915485 -167412862 + AT_rich Low_complexity Low_complexity 1 73 0 221 335 66 62 chr4 34916789 34917093 -167411254 + L2 LINE L2 2837 3141 -172 660 282 29 10 chr4 34917392 34917598 -167410749 + L1MB8 LINE L1 7 216 -6643 577 353 10 10 chr4 34917623 34917824 -167410523 + L1MB8 LINE L1 296 496 -6363 28 0 0 0 chr4 34917887 34917915 -167410432 + AT_rich Low_complexity Low_complexity 1 28 0 1558 214 37 19 chr4 34918040 34918419 -167409928 - MLT1B LTR MaLR -4 386 1 2151 262 56 26 chr4 34918522 34919543 -167408804 + L1MB8 LINE L1 2876 3885 -3072 3342 211 39 41 chr4 34919550 34920518 -167407829 + L1MB8 LINE L1 6021 6984 -5 3321 209 81 39 chr4 34921306 34922342 -167406005 - Tigger6a DNA MER2_type -3 1080 1 204 322 107 8 chr4 34922557 34922678 -167405669 - MIR SINE MIR -33 229 97 183 129 0 0 chr4 34922871 34922902 -167405445 + (TC)n Simple_repeat Simple_repeat 2 32 0 294 371 10 0 chr4 34922944 34923041 -167405306 + MER5A DNA MER1_type 9 106 -83 25 51 0 0 chr4 34923122 34923161 -167405186 + AT_rich Low_complexity Low_complexity 1 39 0 8045 162 15 40 chr4 34923289 34924652 -167403695 + THE1-int LTR MaLR 116 1439 -141 1842 178 35 22 chr4 34924652 34925022 -167403325 - THE1C LTR MaLR 0 375 1 8045 162 15 40 chr4 34925022 34925161 -167403186 + THE1-int LTR MaLR 1439 1580 0 1233 181 107 0 chr4 34925199 34925442 -167402905 + MSTA LTR MaLR 160 428 0 2209 224 29 13 chr4 34925442 34925561 -167402786 + L1MB4 LINE L1 5614 5730 -450 221 0 35 0 chr4 34925561 34925590 -167402757 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2209 224 29 13 chr4 34925590 34926027 -167402320 + L1MB4 LINE L1 5730 6179 -1 524 190 0 20 chr4 34926072 34926172 -167402175 - Charlie1 DNA MER1_type -2580 181 84 458 215 98 61 chr4 34926178 34926341 -167402006 + MER20 DNA MER1_type 34 202 -17 1189 156 12 20 chr4 34927933 34928177 -167400170 - L1MA4 LINE L1 -3 6297 6056 2206 88 0 0 chr4 34928553 34928836 -167399511 - AluSc SINE Alu -10 299 17 479 300 40 29 chr4 34929203 34929553 -167398794 + L1MEd LINE L1 787 1140 -4979 1112 301 135 9 chr4 34929736 34930277 -167398070 - Zaphod DNA AcHobo -3418 613 5 28 61 0 0 chr4 34930565 34930614 -167397733 + AT_rich Low_complexity Low_complexity 1 49 0 218 340 142 20 chr4 34930633 34930880 -167397467 - L3 LINE CR1 -62 1515 1239 35 41 0 0 chr4 34931262 34931311 -167397036 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr4 34931369 34931397 -167396950 + AT_rich Low_complexity Low_complexity 1 28 0 225 179 0 54 chr4 34931952 34932008 -167396339 + T-rich Low_complexity Low_complexity 4 56 0 22 35 0 0 chr4 34932103 34932132 -167396215 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 34932324 34932352 -167395995 + AT_rich Low_complexity Low_complexity 1 28 0 6940 16 0 0 chr4 34932392 34933187 -167395160 - L1PA2 LINE L1 0 6155 5361 6838 26 0 0 chr4 34933184 34934014 -167394333 + L1P LINE L1 4524 5353 -798 * 186 232 0 71 chr4 34935310 34935366 -167392981 + MER5A DNA MER1_type 125 176 -13 308 329 78 71 chr4 34935900 34936183 -167392164 - L2 LINE L2 -24 3289 3005 2109 137 3 0 chr4 34936574 34936881 -167391466 - AluSq SINE Alu -5 308 1 5120 92 108 4 chr4 34936943 34937691 -167390656 - LTR12 LTR ERV1 0 826 1 491 352 47 17 chr4 34939324 34939622 -167388725 + L2 LINE L2 796 1102 -2212 405 229 31 0 chr4 34939628 34939724 -167388623 - MER96B DNA MER1_type? -17 400 302 509 171 47 71 chr4 34939728 34939898 -167388449 + MER96B DNA MER1_type? 85 250 -167 1998 128 0 26 chr4 34940009 34940322 -167388025 + AluSq SINE Alu 3 307 -6 215 369 36 9 chr4 34941596 34941707 -167386640 - MIR SINE MIR -20 242 129 2097 121 0 0 chr4 34942929 34943238 -167385109 + AluSx SINE Alu 1 309 0 213 121 0 0 chr4 34943297 34943330 -167385017 + (GAAA)n Simple_repeat Simple_repeat 1 33 0 319 349 174 0 chr4 34943531 34943680 -167384667 - MER5A DNA MER1_type -1 188 14 677 187 8 0 chr4 34943839 34943962 -167384385 + MLT1A2 LTR MaLR 251 374 0 203 326 51 10 chr4 34944534 34944632 -167383715 + L2 LINE L2 722 823 -2491 1017 176 23 23 chr4 34944904 34945125 -167383222 + L1MA1 LINE L1 23 243 -7322 * 4721 122 65 12 chr4 34945122 34946405 -167381942 + L1MA1 LINE L1 1285 2739 -4826 14537 185 26 4 chr4 34946406 34950923 -167377424 + L1MA1 LINE L1 3106 7721 0 2236 201 68 19 chr4 34950934 34951873 -167376474 + L1MB8 LINE L1 4902 5890 -288 1995 251 59 20 chr4 34953175 34953796 -167374551 - MLT1E2 LTR MaLR -3 623 1 180 322 46 75 chr4 34953922 34954096 -167374251 + L2 LINE L2 1779 1947 -1367 2682 23 0 0 chr4 34954561 34954867 -167373480 + AluY SINE Alu 1 306 -5 343 331 53 42 chr4 34955034 34955297 -167373050 + L1MEd LINE L1 960 1225 -4894 186 43 0 0 chr4 34955401 34955424 -167372923 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 301 188 31 62 chr4 34955432 34955528 -167372819 + HAL1 LINE L1 1515 1607 -900 312 389 17 6 chr4 34956439 34956614 -167371733 - MLT1K LTR MaLR -256 332 156 1620 195 63 14 chr4 34957133 34957481 -167370866 + MLT1A1 LTR MaLR 1 365 0 468 0 0 0 chr4 34958511 34958563 -167369784 + (TA)n Simple_repeat Simple_repeat 2 53 0 1609 146 113 30 chr4 34958785 34959120 -167369227 + THE1C LTR MaLR 13 375 0 9080 142 17 37 chr4 34959122 34960733 -167367614 + THE1C-int LTR MaLR 3 1580 0 1166 212 132 15 chr4 34960733 34961059 -167367288 + THE1B LTR MaLR 1 364 0 680 350 13 1 chr4 34961061 34961279 -167367068 + LTR16A LTR ERVL 156 384 -73 26 30 0 0 chr4 34962045 34962078 -167366269 + AT_rich Low_complexity Low_complexity 1 33 0 207 275 84 30 chr4 34962407 34962538 -167365809 - L2 LINE L2 -831 2483 2346 225 294 76 11 chr4 34963010 34963102 -167365245 - MLT1L LTR MaLR -517 98 1 222 242 15 0 chr4 34963190 34963256 -167365091 + (TA)n Simple_repeat Simple_repeat 1 67 0 360 0 0 0 chr4 34963278 34963318 -167365029 + (TA)n Simple_repeat Simple_repeat 2 41 0 32 43 0 0 chr4 34964534 34964580 -167363767 + AT_rich Low_complexity Low_complexity 1 46 0 319 184 13 66 chr4 34965676 34965752 -167362595 - MLT1I LTR MaLR 0 409 338 287 298 8 23 chr4 34966770 34966901 -167361446 + HAL1b LINE L1 227 355 -993 242 250 31 0 chr4 34967025 34967089 -167361258 + LTR50 LTR ERVL 714 779 -16 6512 246 42 14 chr4 34967183 34969425 -167358922 - L1MC1 LINE L1 0 7128 4619 1589 165 7 34 chr4 34969425 34969740 -167358607 - AluSx SINE Alu 0 307 1 6512 246 42 14 chr4 34969740 34970441 -167357906 - L1MC1 LINE L1 -2509 4619 3939 1270 251 72 40 chr4 34970789 34971020 -167357327 - Charlie1b DNA MER1_type -2244 517 295 1782 175 3 19 chr4 34971020 34971334 -167357013 - AluSx SINE Alu -3 309 1 1270 251 72 40 chr4 34971334 34971603 -167356744 - Charlie1b DNA MER1_type -2466 295 1 239 338 14 104 chr4 34971604 34971826 -167356521 + L2 LINE L2 2579 2780 -534 22 70 0 0 chr4 34972843 34972886 -167355461 + AT_rich Low_complexity Low_complexity 1 43 0 875 248 52 31 chr4 34973315 34973734 -167354613 - L1M4 LINE L1 -2805 3341 2914 303 290 37 0 chr4 34973749 34973856 -167354491 - L1M4 LINE L1 -2663 3483 3373 1311 274 58 40 chr4 34973863 34974138 -167354209 - MLT1F1 LTR MaLR 0 567 279 1651 29 0 14 chr4 34974138 34974339 -167354008 + L1PA5 LINE L1 5945 6144 -10 201 74 0 0 chr4 34974339 34974366 -167353981 + (TA)n Simple_repeat Simple_repeat 1 27 0 1311 274 58 40 chr4 34974373 34974543 -167353804 - MLT1F1 LTR MaLR -288 279 114 229 253 53 13 chr4 34974562 34974637 -167353710 - L1MC1 LINE L1 -4338 2784 2707 575 267 84 68 chr4 34974645 34975087 -167353260 - L1MC1 LINE L1 -4656 2466 2018 330 286 23 30 chr4 34975106 34975239 -167353108 - L1MC1 LINE L1 -5120 1811 1680 261 267 69 0 chr4 34975243 34975344 -167353003 - L1MC1 LINE L1 -4905 1518 1411 469 202 0 19 chr4 34975446 34975550 -167352797 - L1MA10 LINE L1 -3 6331 6230 446 300 63 21 chr4 34976023 34976260 -167352087 - L1MC1 LINE L1 -6080 1042 796 1921 99 48 7 chr4 34976654 34976927 -167351420 + AluSg SINE Alu 12 295 -15 405 279 167 56 chr4 34977939 34978459 -167349888 - L1ME3A LINE L1 -11 6159 5582 1913 197 106 9 chr4 34978459 34978885 -167349462 - MLT1D LTR MaLR 0 505 39 225 94 0 0 chr4 34979106 34979138 -167349209 + (TG)n Simple_repeat Simple_repeat 1 32 0 456 133 13 0 chr4 34979144 34979219 -167349128 - MADE1 DNA Mariner -3 77 2 2016 141 0 10 chr4 34979271 34979576 -167348771 + AluSx SINE Alu 1 302 -10 2030 287 70 31 chr4 34980854 34982446 -167345901 + L1ME LINE L1 141 1738 -4477 339 353 13 0 chr4 34982716 34982866 -167345481 + L1ME LINE L1 2171 2322 -4074 22 56 0 0 chr4 34984031 34984067 -167344280 + AT_rich Low_complexity Low_complexity 1 36 0 2209 91 0 0 chr4 34984282 34984579 -167343768 + AluY SINE Alu 1 297 -14 22 56 0 0 chr4 34985440 34985476 -167342871 + AT_rich Low_complexity Low_complexity 1 36 0 360 0 0 0 chr4 34985989 34986029 -167342318 + (TATATG)n Simple_repeat Simple_repeat 5 44 0 225 220 34 0 chr4 34986432 34986491 -167341856 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 1753 196 0 6 chr4 34987438 34987750 -167340597 + AluJo SINE Alu 1 310 -2 180 77 0 0 chr4 34989113 34989139 -167339208 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2785 142 13 23 chr4 34989155 34989684 -167338663 - L1MA5A LINE L1 -7 6290 5767 205 118 39 0 chr4 34989684 34989735 -167338612 + (TA)n Simple_repeat Simple_repeat 1 53 0 667 177 8 0 chr4 34989739 34989863 -167338484 - L1MA5A LINE L1 -508 5789 5665 * 8080 193 30 23 chr4 34989853 34990841 -167337506 + L1M2 LINE L1 3442 4422 -1875 1000 215 113 58 chr4 34990841 34990946 -167337401 + AluJb SINE Alu 1 99 -203 243 0 0 0 chr4 34990946 34990973 -167337374 + (CA)n Simple_repeat Simple_repeat 2 28 0 1000 215 113 58 chr4 34990973 34991141 -167337206 + AluJb SINE Alu 99 289 -13 8080 193 30 23 chr4 34991141 34992350 -167335997 + L1M2 LINE L1 4422 5660 -637 22 0 0 0 chr4 34992870 34992892 -167335455 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr4 34992959 34992987 -167335360 + (TG)n Simple_repeat Simple_repeat 1 28 0 703 222 45 10 chr4 34993282 34993480 -167334867 + MER3 DNA MER1_type 5 209 0 22 56 0 0 chr4 34993728 34993764 -167334583 + AT_rich Low_complexity Low_complexity 1 36 0 732 315 34 25 chr4 34994546 34994870 -167333477 - LTR16A LTR ERVL -107 343 17 342 324 38 47 chr4 34995016 34995364 -167332983 - ERVL LTR ERVL -310 5344 5040 870 368 68 17 chr4 34995415 34996160 -167332187 - ERVL LTR ERVL -757 4897 4115 287 388 37 18 chr4 34996426 34996699 -167331648 - ERVL LTR ERVL -1807 3847 3570 27 0 0 0 chr4 34996882 34996909 -167331438 + AT_rich Low_complexity Low_complexity 1 27 0 1427 219 12 6 chr4 34996920 34997245 -167331102 + L1MB3 LINE L1 5779 6105 -78 46 0 0 0 chr4 34997245 34997291 -167331056 + AT_rich Low_complexity Low_complexity 1 46 0 405 252 36 0 chr4 34997771 34997882 -167330465 - MIR SINE MIR -43 219 105 210 181 56 0 chr4 34998499 34998571 -167329776 + (TA)n Simple_repeat Simple_repeat 1 76 0 180 0 0 0 chr4 34998609 34998629 -167329718 + (CA)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr4 34999012 34999035 -167329312 + AT_rich Low_complexity Low_complexity 1 23 0 254 360 29 14 chr4 34999364 34999503 -167328844 - MIR3 SINE MIR -1 207 67 307 268 138 32 chr4 34999870 34999993 -167328354 + MIR SINE MIR 111 246 -16 3186 60 0 0 chr4 35000155 35000555 -167327792 - L1PA7 LINE L1 -1 6153 5754 216 67 0 0 chr4 35001153 35001183 -167327164 + (ATG)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr4 35002548 35002570 -167325777 + AT_rich Low_complexity Low_complexity 1 22 0 1014 192 100 0 chr4 35002570 35002831 -167325516 - MER33 DNA MER1_type -36 288 2 23 0 0 0 chr4 35003037 35003060 -167325287 + AT_rich Low_complexity Low_complexity 1 23 0 605 322 22 32 chr4 35003061 35003375 -167324972 - L1ME3A LINE L1 0 6170 5860 2068 243 50 17 chr4 35003434 35003973 -167324374 + MER90 LTR ERV1 1 557 -57 369 0 0 0 chr4 35006421 35006462 -167321885 + (TG)n Simple_repeat Simple_repeat 2 42 0 287 283 119 96 chr4 35006980 35007199 -167321148 + MIR SINE MIR 12 235 -27 28 91 0 0 chr4 35007460 35007537 -167320810 + AT_rich Low_complexity Low_complexity 1 77 0 1354 194 75 65 chr4 35008000 35008396 -167319951 + MLT1B LTR MaLR 2 390 0 2118 131 0 0 chr4 35008541 35008832 -167319515 - AluSx SINE Alu -17 295 5 2135 172 50 8 chr4 35008895 35009297 -167319050 + MSTB1 LTR MaLR 14 432 0 279 323 30 0 chr4 35010021 35010120 -167318227 + MLT1I LTR MaLR 37 138 -271 291 324 37 27 chr4 35012331 35012488 -167315859 - MIR SINE MIR -98 164 8 308 58 0 58 chr4 35013436 35013488 -167314859 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 260 333 139 9 chr4 35013493 35013601 -167314746 + MIR SINE MIR 8 129 -133 324 333 13 67 chr4 35013925 35014150 -167314197 + MLT1J LTR MaLR 247 459 -52 328 157 0 14 chr4 35014307 35014377 -167313970 + L1MA6 LINE L1 6226 6294 -6 2247 297 62 8 chr4 35015038 35016245 -167312102 - L1M4 LINE L1 -1569 4577 3306 29 0 0 0 chr4 35016245 35016274 -167312073 + AT_rich Low_complexity Low_complexity 1 29 0 277 321 54 0 chr4 35017073 35017180 -167311167 - MIR SINE MIR -65 143 45 183 289 20 105 chr4 35018877 35019029 -167309318 + MIR SINE MIR 65 203 -59 794 262 66 4 chr4 35019203 35019447 -167308900 - L1MB7 LINE L1 -8 6176 5918 28 61 0 0 chr4 35019463 35019512 -167308835 + AT_rich Low_complexity Low_complexity 1 49 0 500 202 70 0 chr4 35019531 35019645 -167308702 - L1MB7 LINE L1 -263 5911 5790 279 274 118 9 chr4 35019653 35019865 -167308482 - L1MDa LINE L1 -2752 3892 3658 21 71 0 0 chr4 35019891 35019933 -167308414 + AT_rich Low_complexity Low_complexity 1 42 0 1699 162 173 6 chr4 35020000 35020365 -167307982 - MSTA LTR MaLR -2 426 1 4925 174 9 17 chr4 35020365 35021229 -167307118 - THE1B-int LTR MaLR 0 1580 724 381 211 0 0 chr4 35021237 35021308 -167307039 - MER76 LTR ERV -534 154 84 991 122 6 33 chr4 35021308 35021471 -167306876 - THE1B-int LTR MaLR -1475 176 17 2138 128 54 20 chr4 35021471 35021823 -167306524 - THE1B LTR MaLR 0 364 1 991 122 6 33 chr4 35021823 35021840 -167306507 - THE1B-int LTR MaLR -1634 17 1 2090 138 138 5 chr4 35021840 35022217 -167306130 - MSTA LTR MaLR 0 428 2 1840 250 80 38 chr4 35022233 35023197 -167305150 - L1MDa LINE L1 -3115 3529 2523 2064 276 17 31 chr4 35023407 35023694 -167304653 - L1MDa LINE L1 -4570 2076 1787 2548 161 13 11 chr4 35023694 35024154 -167304193 + L1PA16 LINE L1 5704 6164 -2 2064 276 17 31 chr4 35024154 35024611 -167303736 - L1MDa LINE L1 -4859 1787 1342 823 221 70 18 chr4 35024605 35024890 -167303457 - L1MD3 LINE L1 0 7995 7696 * 708 97 9 18 chr4 35024889 35025002 -167303345 - L1PBa LINE L1 -6116 747 636 * 1053 158 20 0 chr4 35025004 35025200 -167303147 - L1PBa LINE L1 -6663 200 1 3506 253 48 43 chr4 35025203 35026561 -167301786 - L1MDa LINE L1 -5166 1376 12 23 0 0 0 chr4 35026766 35026789 -167301558 + AT_rich Low_complexity Low_complexity 1 23 0 200 132 0 26 chr4 35026870 35026908 -167301439 + (CAAAAA)n Simple_repeat Simple_repeat 1 37 0 23 0 0 0 chr4 35027078 35027101 -167301246 + AT_rich Low_complexity Low_complexity 1 23 0 192 361 17 8 chr4 35027665 35027784 -167300563 - L3 LINE CR1 -364 1213 1094 2106 166 78 2 chr4 35027845 35028243 -167300104 - MSTC LTR MaLR 0 428 1 287 305 15 0 chr4 35028335 35028421 -167299926 + MIR SINE MIR 31 119 -89 192 395 9 9 chr4 35028410 35028519 -167299828 - L2 LINE L2 -619 2695 2587 * 196 393 55 21 chr4 35028533 35028678 -167299669 - L2 LINE L2 -20 3252 3103 522 280 40 0 chr4 35028716 35028866 -167299481 - L3 LINE CR1 -490 1087 932 1443 225 95 72 chr4 35029537 35029552 -167298795 + MLT2B2 LTR ERVL 8 21 -494 2765 196 48 54 chr4 35029552 35030278 -167298069 + MER72 LTR ERV1 1 722 0 1443 225 95 72 chr4 35030278 35030747 -167297600 + MLT2B2 LTR ERVL 21 503 -12 6838 216 33 40 chr4 35030755 35031096 -167297251 + ERVL-B2 LTR ERVL 2 344 -5420 627 135 63 0 chr4 35031096 35031222 -167297125 + L1MA7 LINE L1 6158 6291 0 6838 216 33 40 chr4 35031222 35032497 -167295850 + ERVL-B2 LTR ERVL 344 1607 -4157 * 10410 197 29 37 chr4 35032490 35033213 -167295134 + ERVL LTR ERVL 3279 4007 -1757 540 65 0 0 chr4 35033213 35033290 -167295057 + (CA)n Simple_repeat Simple_repeat 2 78 0 10410 197 29 37 chr4 35033290 35034111 -167294236 + ERVL LTR ERVL 4007 4801 -963 2077 124 3 3 chr4 35034111 35034409 -167293938 + AluSq SINE Alu 1 298 -15 10410 197 29 37 chr4 35034409 35035030 -167293317 + ERVL LTR ERVL 4801 5426 -338 243 61 0 0 chr4 35035040 35035073 -167293274 + (CA)n Simple_repeat Simple_repeat 2 34 0 226 133 0 67 chr4 35035073 35035107 -167293240 + MLT2B1 LTR ERVL 481 513 -7 448 326 44 11 chr4 35035841 35036022 -167292325 + MIR SINE MIR 2 188 -74 713 279 53 11 chr4 35036034 35036296 -167292051 - LTR52 LTR ERVL -3 418 146 453 246 8 30 chr4 35036325 35036459 -167291888 - LTR52 LTR ERVL -266 155 25 2021 95 0 0 chr4 35036473 35036735 -167291612 - AluSq SINE Alu -14 299 38 307 213 88 0 chr4 35036873 35036953 -167291394 - LTR52-int LTR ERVL -2480 3205 3119 3598 279 49 12 chr4 35036959 35038035 -167290312 - LTR52-int LTR ERVL -239 3317 1658 3822 264 50 26 chr4 35038119 35038856 -167289491 - LTR52-int LTR ERVL -1489 2067 1286 1979 148 42 28 chr4 35038856 35039215 -167289132 - THE1B LTR MaLR 0 364 1 3822 264 50 26 chr4 35039215 35039724 -167288623 - LTR52-int LTR ERVL -2270 1286 791 2464 251 29 43 chr4 35039733 35040413 -167287934 - LTR52-int LTR ERVL -2885 671 1 1241 246 57 37 chr4 35040420 35040823 -167287524 - LTR52 LTR ERVL -10 411 1 253 298 37 102 chr4 35040897 35041112 -167287235 - MLT1J LTR MaLR -200 311 111 1322 297 34 51 chr4 35042739 35043373 -167284974 + L1M3e LINE L1 1 1801 -5229 1702 213 43 9 chr4 35043377 35043823 -167284524 + L1M3e LINE L1 2058 2518 -4519 4646 31 0 0 chr4 35043855 35044401 -167283946 - L1PA4 LINE L1 -183 5972 5427 1272 65 0 0 chr4 35044401 35044563 -167283784 + L1PA4 LINE L1 5988 6155 0 5777 240 72 30 chr4 35044566 35047228 -167281119 + L1M4c LINE L1 1405 4204 -2178 346 131 0 0 chr4 35047231 35047292 -167281055 + L1MA9 LINE L1 6250 6310 -2 24 0 0 0 chr4 35047298 35047322 -167281025 + AT_rich Low_complexity Low_complexity 1 24 0 226 77 0 0 chr4 35048031 35048070 -167280277 - AluY SINE Alu 0 302 264 1485 29 6 0 chr4 35048078 35048249 -167280098 - AluY SINE Alu -139 172 1 2554 29 7 26 chr4 35048272 35048582 -167279765 - AluY SINE Alu -2 309 6 1910 123 0 14 chr4 35048951 35049260 -167279087 + AluY SINE Alu 1 305 0 21 57 0 0 chr4 35049556 35049591 -167278756 + AT_rich Low_complexity Low_complexity 1 35 0 730 226 210 20 chr4 35049728 35049923 -167278424 - MSTD LTR MaLR 0 396 165 4555 106 24 69 chr4 35049923 35050754 -167277593 - L1P LINE L1 -925 5221 4428 6747 65 11 0 chr4 35050755 35051642 -167276705 + L1PA7 LINE L1 5258 6154 0 542 14 0 0 chr4 35052207 35052276 -167276071 + L1PA2 LINE L1 6087 6155 0 1554 243 12 3 chr4 35054494 35054840 -167273507 - MLT1A1 LTR MaLR -16 349 1 1151 181 70 0 chr4 35056364 35056579 -167271768 - AluJo SINE Alu -82 230 1 362 137 0 14 chr4 35056699 35056772 -167271575 + (TA)n Simple_repeat Simple_repeat 1 72 0 23 0 0 0 chr4 35057175 35057198 -167271149 + AT_rich Low_complexity Low_complexity 1 23 0 294 29 0 86 chr4 35057217 35057287 -167271060 + (TA)n Simple_repeat Simple_repeat 1 64 0 219 50 17 83 chr4 35057388 35057448 -167270899 + (TA)n Simple_repeat Simple_repeat 1 56 0 459 167 18 88 chr4 35058108 35058222 -167270125 - MLT1D LTR MaLR -399 106 1 3993 110 33 16 chr4 35058647 35059275 -167269072 + L1PA13 LINE L1 5524 6162 -1 26 30 0 0 chr4 35059519 35059552 -167268795 + AT_rich Low_complexity Low_complexity 1 33 0 333 417 38 29 chr4 35059685 35060265 -167268082 + L2 LINE L2 814 1398 -1916 1611 184 51 24 chr4 35060502 35060838 -167267509 - MER7A DNA MER2_type 0 346 4 5972 123 41 34 chr4 35060887 35061950 -167266397 + MER11C LTR ERVK 1 1071 0 2544 78 0 0 chr4 35061950 35062269 -167266078 + HERVK11 LTR ERVK 1 319 -7634 1018 99 0 0 chr4 35062267 35062418 -167265929 + HERVK11 LTR ERVK 796 946 -7007 * 751 324 31 22 chr4 35063152 35063476 -167264871 - LTR16A LTR ERVL -107 343 17 3002 293 66 12 chr4 35065367 35066392 -167261955 - LTR16A-int LTR ERVL -239 3317 2237 1776 196 0 6 chr4 35066984 35067296 -167261051 + AluJo SINE Alu 1 310 -2 1199 221 75 4 chr4 35067921 35068175 -167260172 + MLT1A1 LTR MaLR 94 365 0 180 0 0 0 chr4 35069301 35069321 -167259026 + (C)n Simple_repeat Simple_repeat 1 20 0 422 220 82 25 chr4 35069440 35069599 -167258748 + THE1B LTR MaLR 12 179 -185 222 279 49 0 chr4 35269790 35269851 -167058496 + L2 LINE L2 3240 3303 -10 200 200 17 0 chr4 35270666 35270726 -167057621 + (TA)n Simple_repeat Simple_repeat 2 62 0 505 266 4 87 chr4 35270754 35270983 -167057364 - MER58C DNA MER1_type -4 211 2 228 111 0 0 chr4 35271367 35271403 -167056944 + (T)n Simple_repeat Simple_repeat 1 36 0 1160 225 51 30 chr4 35271403 35271771 -167056576 + MLT2D LTR ERVL 90 464 0 635 256 18 0 chr4 35271782 35271950 -167056397 + MLT1F1 LTR MaLR 397 567 0 1070 99 6 0 chr4 35272129 35272291 -167056056 - L1PA13 LINE L1 -4 6159 5997 279 154 0 0 chr4 35273331 35273396 -167054951 + GA-rich Low_complexity Low_complexity 1 65 0 346 245 117 58 chr4 35274587 35274775 -167053572 + L1M2 LINE L1 1732 1930 -4919 1545 215 10 56 chr4 35274792 35275201 -167053146 - MSTD LTR MaLR -4 392 3 382 290 48 7 chr4 35277379 35277524 -167050823 - MLT1C LTR MaLR -231 236 86 822 168 0 0 chr4 35277524 35277661 -167050686 - AluSg/x SINE Alu -6 306 170 817 293 35 32 chr4 35278161 35278211 -167050136 + L1MDa LINE L1 34 82 -6458 435 38 0 0 chr4 35278211 35278264 -167050083 + (CA)n Simple_repeat Simple_repeat 2 54 0 817 293 35 32 chr4 35278264 35278527 -167049820 + L1MDa LINE L1 82 348 -6192 2397 60 24 0 chr4 35279668 35279966 -167048381 - AluY SINE Alu -6 305 1 2044 174 33 33 chr4 35280360 35280909 -167047438 - MLT2A1 LTR ERVL 0 554 1 1968 138 3 7 chr4 35281148 35281446 -167046901 - AluSp SINE Alu -16 297 1 1275 245 53 39 chr4 35281493 35281905 -167046442 - LTR52 LTR ERVL -3 418 1 282 346 77 0 chr4 35282516 35282620 -167045727 + L2 LINE L2 3197 3308 -5 1218 256 55 101 chr4 35282801 35283378 -167044969 - MLT1E LTR MaLR 0 593 43 226 71 24 24 chr4 35283741 35283783 -167044564 + (TA)n Simple_repeat Simple_repeat 1 42 0 1875 194 25 11 chr4 35283792 35284153 -167044194 - MLT2D LTR ERVL -48 366 1 303 82 33 16 chr4 35284876 35284937 -167043410 + (TA)n Simple_repeat Simple_repeat 1 62 0 390 257 64 43 chr4 35286249 35286389 -167041958 + MLT1K LTR MaLR 405 547 -41 304 301 71 18 chr4 35287792 35287905 -167040442 - L2 LINE L2 -5 3267 3149 191 243 0 0 chr4 35288727 35288764 -167039583 + L2 LINE L2 3234 3270 -2 215 208 42 0 chr4 35289083 35289131 -167039216 + (TATG)n Simple_repeat Simple_repeat 3 52 0 338 319 5 69 chr4 35289972 35290176 -167038171 - L2 LINE L2 0 3313 3123 184 207 0 0 chr4 35290214 35290243 -167038104 - MER5A DNA MER1_type 0 189 161 2136 144 13 0 chr4 35290243 35290618 -167037729 + L1M1 LINE L1 2830 3209 -4356 189 94 0 0 chr4 35290954 35290986 -167037361 + (A)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr4 35292262 35292283 -167036064 + AT_rich Low_complexity Low_complexity 1 21 0 476 219 4 201 chr4 35292347 35292616 -167035731 - MIR SINE MIR 0 262 47 416 293 14 36 chr4 35293308 35293448 -167034899 + MIR SINE MIR 56 192 -70 22 35 0 0 chr4 35293641 35293670 -167034677 + AT_rich Low_complexity Low_complexity 1 29 0 3309 326 116 26 chr4 35293890 35295734 -167032613 + L2 LINE L2 34 2064 -1250 243 0 0 0 chr4 35295734 35295761 -167032586 + (CA)n Simple_repeat Simple_repeat 2 28 0 3309 326 116 26 chr4 35295761 35295863 -167032484 + L2 LINE L2 2064 2155 -1159 223 400 60 30 chr4 35296490 35296920 -167031427 + L2 LINE L2 2298 2740 -574 22 0 0 0 chr4 35297042 35297064 -167031283 + AT_rich Low_complexity Low_complexity 1 22 0 231 422 50 6 chr4 35297091 35297252 -167031095 + L2 LINE L2 3101 3268 -4 456 258 60 57 chr4 35297303 35297636 -167030711 + L1MC4a LINE L1 5641 5974 -1834 548 305 61 15 chr4 35297642 35298036 -167030311 - L1MC4 LINE L1 -561 7481 7070 1006 191 10 0 chr4 35298055 35298254 -167030093 - MER47A DNA MER2_type -3 363 163 1066 168 0 11 chr4 35298273 35298464 -167029883 - MER47A DNA MER2_type -177 189 1 819 233 58 51 chr4 35298473 35298748 -167029599 - L1MC4 LINE L1 -976 7066 6790 606 258 56 20 chr4 35298755 35298953 -167029394 - MLT1F LTR MaLR 0 542 338 284 265 85 42 chr4 35299058 35299247 -167029100 + L1MC4a LINE L1 6186 6382 -1426 200 216 0 0 chr4 35299348 35299385 -167028962 + (CATA)n Simple_repeat Simple_repeat 3 39 0 25446 70 5 4 chr4 35299430 35303627 -167024720 + L1PA6 LINE L1 1938 6141 -13 2033 182 14 5 chr4 35303632 35304000 -167024347 + MER65A LTR ERV1 75 445 0 440 47 0 16 chr4 35304005 35304069 -167024278 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 348 284 29 20 chr4 35304075 35304177 -167024170 + L1MC4 LINE L1 6681 6783 -1259 458 311 61 6 chr4 35304183 35304347 -167024000 + MLT1F LTR MaLR 1 173 -369 343 264 30 23 chr4 35304520 35304685 -167023662 + LTR43 LTR ERV1 155 472 -207 1169 234 130 24 chr4 35304851 35305189 -167023158 + MLT1F LTR MaLR 169 542 0 2693 226 43 71 chr4 35305189 35305656 -167022691 + L1MC4 LINE L1 6783 7261 -781 1690 136 0 12 chr4 35305656 35305907 -167022440 - AluSq SINE Alu -17 296 49 2693 226 43 71 chr4 35305907 35306454 -167021893 + L1MC4 LINE L1 7261 7769 -273 1236 117 0 28 chr4 35306471 35306651 -167021696 - AluSg SINE Alu -17 295 121 27 0 0 0 chr4 35307099 35307126 -167021221 + AT_rich Low_complexity Low_complexity 1 27 0 999 102 0 0 chr4 35309213 35309341 -167019006 - AluSg SINE Alu -179 131 4 306 283 24 117 chr4 35309344 35309634 -167018713 + L1MC4 LINE L1 7780 8042 0 2436 53 0 13 chr4 35309968 35310272 -167018075 + AluY SINE Alu 2 301 -10 309 89 0 0 chr4 35311130 35311175 -167017172 + (CA)n Simple_repeat Simple_repeat 2 46 0 2430 73 0 13 chr4 35312435 35312750 -167015597 - AluY SINE Alu 0 311 1 21 21 0 64 chr4 35315892 35315939 -167012408 + AT_rich Low_complexity Low_complexity 1 44 0 1031 200 162 43 chr4 35316797 35317142 -167011205 - MLT1B LTR MaLR 0 390 5 643 71 0 0 chr4 35317402 35317486 -167010861 + L1PA7 LINE L1 6065 6148 -6 253 231 33 11 chr4 35318576 35318667 -167009680 + (TA)n Simple_repeat Simple_repeat 2 94 0 1351 264 92 44 chr4 35318750 35319659 -167008688 + L1ME3 LINE L1 5115 6066 -96 904 204 6 0 chr4 35319661 35319833 -167008514 - AluJ SINE Alu -11 301 129 713 203 8 0 chr4 35319874 35320007 -167008340 - AluJ SINE Alu -178 134 1 225 156 62 62 chr4 35320074 35320138 -167008209 + L1ME3 LINE L1 6099 6162 0 2019 92 0 10 chr4 35320145 35320438 -167007909 + AluY SINE Alu 1 290 -21 223 264 0 0 chr4 35320512 35320565 -167007782 + (TATATG)n Simple_repeat Simple_repeat 1 53 0 180 0 0 0 chr4 35320569 35320589 -167007758 + (CA)n Simple_repeat Simple_repeat 1 20 0 1673 167 38 20 chr4 35320826 35321167 -167007180 + MER7A DNA MER2_type 1 345 -1 744 73 128 0 chr4 35321202 35321311 -167007036 + AluSg/x SINE Alu 176 298 -14 990 211 48 0 chr4 35321328 35321536 -167006811 - L1MC4 LINE L1 -375 7667 7450 255 254 0 0 chr4 35322488 35322551 -167005796 - MLT1J LTR MaLR 0 511 449 265 190 52 0 chr4 35322592 35322650 -167005697 - MLT1F LTR MaLR -18 524 464 280 339 6 36 chr4 35322862 35323030 -167005317 - MLT1J LTR MaLR -348 163 1 294 145 16 54 chr4 35324051 35324237 -167004110 + (TA)n Simple_repeat Simple_repeat 1 179 0 517 139 29 7 chr4 35324302 35324345 -167004002 + (TA)n Simple_repeat Simple_repeat 2 43 -98 2319 62 0 10 chr4 35324345 35324634 -167003713 + AluSc SINE Alu 1 286 -23 517 139 29 7 chr4 35324634 35324727 -167003620 + (TA)n Simple_repeat Simple_repeat 43 141 0 187 367 61 34 chr4 35325418 35325565 -167002782 - MIR SINE MIR -31 231 81 351 96 0 0 chr4 35327771 35327823 -167000524 + (GGGA)n Simple_repeat Simple_repeat 4 55 0 191 125 50 75 chr4 35328267 35328307 -167000040 - MER5A DNA MER1_type 0 189 151 385 295 212 0 chr4 35328969 35329162 -166999185 + MIR SINE MIR 12 245 -17 1156 137 57 0 chr4 35329795 35330007 -166998340 + L1MA3 LINE L1 6082 6305 0 21 0 0 0 chr4 35330480 35330501 -166997846 + AT_rich Low_complexity Low_complexity 1 21 0 1683 273 63 49 chr4 35330937 35331570 -166996777 + L1M2b LINE L1 1 642 -6567 1150 270 104 17 chr4 35331565 35331754 -166996593 + L1M2b LINE L1 1630 1801 -5408 * 180 0 0 0 chr4 35331754 35331774 -166996573 + (CAA)n Simple_repeat Simple_repeat 1 20 0 1150 270 104 17 chr4 35331774 35332057 -166996290 + L1M2b LINE L1 1801 2116 -5093 2022 194 146 11 chr4 35332060 35332658 -166995689 + L1M2b LINE L1 1908 2612 -4597 2668 203 31 18 chr4 35332660 35333314 -166995033 + L1M2b LINE L1 4376 5037 -2171 1211 202 39 10 chr4 35333324 35333636 -166994711 + L1M2b LINE L1 5296 5616 -1592 247 240 27 0 chr4 35333934 35334009 -166994338 - L1ME LINE L1 -419 5751 5675 * 651 256 110 31 chr4 35334000 35334339 -166994008 - L1M1 LINE L1 -579 5585 5285 183 376 56 34 chr4 35334542 35334808 -166993539 - L2 LINE L2 -604 2710 2439 576 136 29 0 chr4 35334948 35335051 -166993296 + MER61B LTR ERV1 1 106 -319 * 1370 177 52 18 chr4 35335038 35335332 -166993015 + MER61B LTR ERV1 27 396 -10 729 338 116 57 chr4 35335340 35336455 -166991892 - L2 LINE L2 -1145 2169 990 457 313 56 45 chr4 35336951 35337149 -166991198 - MIR SINE MIR -54 208 9 1711 160 3 3 chr4 35338766 35339068 -166989279 + AluSx SINE Alu 1 302 0 21 36 0 0 chr4 35339389 35339417 -166988930 + AT_rich Low_complexity Low_complexity 1 28 0 237 348 54 0 chr4 35341208 35341300 -166987047 - MIR SINE MIR -43 219 123 269 100 20 0 chr4 35341472 35341522 -166986825 + (GA)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chr4 35342235 35342263 -166986084 + AT_rich Low_complexity Low_complexity 1 28 0 423 0 0 0 chr4 35342562 35342609 -166985738 + (TA)n Simple_repeat Simple_repeat 1 47 0 198 0 0 0 chr4 35342608 35342630 -166985717 + (GA)n Simple_repeat Simple_repeat 2 23 0 * 22 35 0 0 chr4 35343180 35343209 -166985138 + AT_rich Low_complexity Low_complexity 1 29 0 433 83 0 28 chr4 35343210 35343282 -166985065 + (TA)n Simple_repeat Simple_repeat 2 71 0 261 0 0 0 chr4 35343306 35343335 -166985012 + (GA)n Simple_repeat Simple_repeat 2 30 0 2629 234 69 83 chr4 35344960 35345729 -166982618 + L1MC4 LINE L1 5979 6762 -1126 2032 78 4 0 chr4 35345729 35345985 -166982362 + AluSc SINE Alu 1 257 -52 2629 234 69 83 chr4 35345985 35346542 -166981805 + L1MC4 LINE L1 6762 7326 -562 2118 168 10 37 chr4 35346542 35346947 -166981400 + MSTC LTR MaLR 1 394 -34 1877 105 8 8 chr4 35346947 35347252 -166981095 + AluSc SINE Alu 13 317 0 1617 240 108 59 chr4 35347253 35347936 -166980411 + L1MC4 LINE L1 7319 8035 -7 2587 180 35 35 chr4 35347936 35348448 -166979899 + MLT2B2 LTR ERVL 2 513 -2 1127 182 141 25 chr4 35348473 35348715 -166979632 + AluJb SINE Alu 16 285 -27 26 30 0 0 chr4 35348716 35348749 -166979598 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr4 35349132 35349156 -166979191 + AT_rich Low_complexity Low_complexity 1 24 0 309 109 0 0 chr4 35350615 35350661 -166977686 + (CA)n Simple_repeat Simple_repeat 2 47 0 2119 191 2 44 chr4 35350661 35351111 -166977236 + Tigger2a DNA MER2_type 4 434 0 728 82 15 74 chr4 35351117 35351252 -166977095 - MLT2C2 LTR ERVL -333 131 5 2226 211 22 17 chr4 35351312 35351852 -166976495 + MER67A LTR ERV1 1 543 0 23 0 0 0 chr4 35351918 35351941 -166976406 + AT_rich Low_complexity Low_complexity 1 23 0 2944 144 41 2 chr4 35352900 35353393 -166974954 - MER75 DNA T2_type -1 513 2 23 0 0 0 chr4 35355022 35355045 -166973302 + AT_rich Low_complexity Low_complexity 1 23 0 239 27 0 54 chr4 35357490 35357527 -166970820 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 28 79 0 0 chr4 35358057 35358120 -166970227 + AT_rich Low_complexity Low_complexity 1 63 0 2075 225 70 6 chr4 35358148 35358623 -166969724 - MLT1D LTR MaLR 0 505 1 228 209 75 30 chr4 35358654 35358721 -166969626 - MIR SINE MIR -81 181 112 302 284 9 18 chr4 35359518 35359627 -166968720 + (CATATA)n Simple_repeat Simple_repeat 5 112 0 287 273 16 70 chr4 35363594 35363722 -166964625 + Charlie8 DNA MER1_type 155 275 -2142 190 349 0 0 chr4 35364298 35364364 -166963983 + MIR SINE MIR 75 140 -122 724 304 46 13 chr4 35364383 35364620 -166963727 + MIR SINE MIR 18 262 0 22 70 0 0 chr4 35364787 35364830 -166963517 + AT_rich Low_complexity Low_complexity 1 43 0 2012 227 73 0 chr4 35366709 35367149 -166961198 + MER70A LTR ERVL 1 472 0 1812 140 104 26 chr4 35367218 35367604 -166960743 - MSTA LTR MaLR -12 416 1 430 329 38 46 chr4 35367658 35367898 -166960449 - L2 LINE L2 -80 3233 2996 928 314 15 0 chr4 35367911 35368172 -166960175 + MLT1E LTR MaLR 329 593 0 821 254 99 78 chr4 35368180 35368704 -166959643 + MLT1E-int LTR MaLR 126 660 -711 2288 97 0 22 chr4 35369075 35369386 -166958961 - AluY SINE Alu -7 304 1 356 270 83 117 chr4 35369440 35369825 -166958522 + MLT1E-int LTR MaLR 966 1337 -34 947 149 12 7 chr4 35371760 35371948 -166956399 - L1MB1 LINE L1 -1 6167 5986 305 291 0 12 chr4 35371974 35372060 -166956287 - MLT1E1 LTR MaLR -514 140 56 23 0 0 0 chr4 35372165 35372188 -166956159 + AT_rich Low_complexity Low_complexity 1 23 0 202 222 16 32 chr4 35372280 35372343 -166956004 - MIR SINE MIR -101 161 100 22 0 0 0 chr4 35372522 35372544 -166955803 + AT_rich Low_complexity Low_complexity 1 22 0 192 77 0 0 chr4 35372896 35372922 -166955425 + (T)n Simple_repeat Simple_repeat 1 26 0 24 32 0 0 chr4 35373475 35373506 -166954841 + AT_rich Low_complexity Low_complexity 1 31 0 208 179 26 0 chr4 35373525 35373564 -166954783 + GA-rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 35373789 35373810 -166954537 + AT_rich Low_complexity Low_complexity 1 21 0 270 355 21 0 chr4 35375942 35376035 -166952312 - MIR3 SINE MIR -9 199 105 279 0 0 0 chr4 35376909 35376940 -166951407 + (TG)n Simple_repeat Simple_repeat 1 31 0 240 331 92 7 chr4 35377565 35377707 -166950640 + MIR SINE MIR 59 212 -50 306 360 100 7 chr4 35377982 35378200 -166950147 - L2 LINE L2 -324 2989 2757 445 31 16 16 chr4 35380072 35380136 -166948211 + (TG)n Simple_repeat Simple_repeat 2 65 0 304 349 70 0 chr4 35380828 35381000 -166947347 + MIR SINE MIR 66 249 -13 30 0 0 0 chr4 35381064 35381094 -166947253 + AT_rich Low_complexity Low_complexity 1 30 0 479 304 46 83 chr4 35383989 35384265 -166944082 - MIR SINE MIR 0 262 5 551 298 11 32 chr4 35386444 35386632 -166941715 - MIR SINE MIR -2 260 77 182 313 134 0 chr4 35387375 35387442 -166940905 - L2 LINE L2 -17 3255 3180 284 250 351 36 chr4 35387560 35387868 -166940479 + L2 LINE L2 2047 2451 -863 437 333 68 14 chr4 35387948 35388167 -166940180 - MIR SINE MIR -30 232 2 2239 92 7 0 chr4 35388309 35388615 -166939732 + AluY SINE Alu 1 308 -3 21 71 0 0 chr4 35389495 35389537 -166938810 + AT_rich Low_complexity Low_complexity 1 42 0 1428 249 44 42 chr4 35390613 35391116 -166937231 + MLT1D LTR MaLR 2 505 0 230 140 0 40 chr4 35393535 35393585 -166934762 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 368 200 11 0 chr4 35393821 35393916 -166934431 + (TA)n Simple_repeat Simple_repeat 2 97 0 21 0 0 0 chr4 35394540 35394561 -166933786 + AT_rich Low_complexity Low_complexity 1 21 0 227 338 115 29 chr4 35394653 35394792 -166933555 - MIR SINE MIR -66 196 46 1986 138 0 0 chr4 35396311 35396587 -166931760 - AluSx SINE Alu -36 276 1 25 0 0 0 chr4 35398568 35398593 -166929754 + AT_rich Low_complexity Low_complexity 1 25 0 758 84 15 15 chr4 35399730 35399861 -166928486 + (TTTC)n Simple_repeat Simple_repeat 2 132 0 183 80 0 0 chr4 35399939 35399964 -166928383 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 272 208 0 14 chr4 35400219 35400291 -166928056 + T-rich Low_complexity Low_complexity 4 74 0 781 154 28 17 chr4 35400307 35400749 -166927598 + CT-rich Low_complexity Low_complexity 1 446 0 851 214 26 74 chr4 35400864 35401249 -166927098 - MER67D LTR ERV1 -32 435 24 234 0 0 0 chr4 35401855 35401881 -166926466 + (CA)n Simple_repeat Simple_repeat 2 27 0 204 40 0 0 chr4 35401881 35401906 -166926441 + (CCA)n Simple_repeat Simple_repeat 2 26 0 582 329 64 78 chr4 35402486 35402985 -166925362 - L2 LINE L2 -18 3295 2804 32 57 0 0 chr4 35404226 35404279 -166924068 + AT_rich Low_complexity Low_complexity 1 53 0 2171 103 3 0 chr4 35404311 35404612 -166923735 - AluSg SINE Alu -8 302 1 227 349 119 27 chr4 35404791 35405052 -166923295 + L2 LINE L2 1548 1832 -1482 304 352 136 37 chr4 35405057 35405654 -166922693 + L2 LINE L2 1957 2612 -702 1335 112 5 47 chr4 35405692 35405906 -166922441 - AluSg/x SINE Alu -17 295 91 496 332 85 12 chr4 35405911 35406170 -166922177 + L2 LINE L2 2697 2974 -340 1989 125 34 0 chr4 35406971 35407268 -166921079 - AluSg SINE Alu -3 307 1 218 31 0 31 chr4 35407537 35407569 -166920778 + (CA)n Simple_repeat Simple_repeat 1 31 0 229 292 15 0 chr4 35407584 35407649 -166920698 + (CATA)n Simple_repeat Simple_repeat 2 67 0 313 283 43 36 chr4 35407695 35407833 -166920514 + MLT1K LTR MaLR 322 460 -128 303 291 107 0 chr4 35408088 35408191 -166920156 - MIR SINE MIR -81 181 68 21 0 0 0 chr4 35409094 35409115 -166919232 + AT_rich Low_complexity Low_complexity 1 21 0 5246 237 15 14 chr4 35409211 35410655 -166917692 - L1PA16 LINE L1 -1683 4463 3019 4921 188 25 26 chr4 35410639 35412362 -166915985 + L1PA16 LINE L1 4445 6157 -9 * 454 294 24 18 chr4 35412469 35412639 -166915708 + MIR SINE MIR 88 258 -4 406 363 77 16 chr4 35413045 35413227 -166915120 + MLT1I LTR MaLR 147 339 -70 188 372 31 31 chr4 35413778 35413969 -166914378 - L2 LINE L2 -1360 1954 1764 260 309 151 15 chr4 35414388 35414653 -166913694 + L1ME LINE L1 5577 5877 -244 249 152 45 15 chr4 35414717 35414783 -166913564 + (TA)n Simple_repeat Simple_repeat 2 69 0 1114 213 4 0 chr4 35415012 35415237 -166913110 + AluJo SINE Alu 86 311 -1 2131 188 49 7 chr4 35415351 35415760 -166912587 - MSTB LTR MaLR 0 426 1 7785 194 72 10 chr4 35415760 35416131 -166912216 - MSTB-int LTR MaLR 0 1651 1304 2557 121 3 0 chr4 35416131 35416494 -166911853 + THE1B LTR MaLR 1 364 0 7785 194 72 10 chr4 35416494 35417675 -166910672 - MSTB-int LTR MaLR -347 1304 4 2191 182 31 14 chr4 35417682 35418099 -166910248 - MSTB LTR MaLR -2 424 1 312 232 12 24 chr4 35418126 35418208 -166910139 - MER5A DNA MER1_type -100 89 9 1116 266 92 24 chr4 35418649 35419063 -166909284 + MER69 DNA AcHobo 1 442 -2084 343 244 123 68 chr4 35419105 35419592 -166908755 + MER69 DNA AcHobo 2010 2523 -3 253 287 213 0 chr4 35419599 35419735 -166908612 + MIR SINE MIR 98 262 0 596 119 44 0 chr4 35419965 35420124 -166908223 + (TA)n Simple_repeat Simple_repeat 2 167 0 25 31 0 0 chr4 35420393 35420425 -166907922 + AT_rich Low_complexity Low_complexity 1 32 0 999 258 121 8 chr4 35420836 35421192 -166907155 - MSTB LTR MaLR 0 396 1 1232 197 42 72 chr4 35421701 35422062 -166906285 - MLT1A1 LTR MaLR 0 365 16 296 301 20 96 chr4 35422099 35422245 -166906102 + MER5A DNA MER1_type 27 161 -28 231 254 0 16 chr4 35422568 35422631 -166905716 + (TA)n Simple_repeat Simple_repeat 2 63 0 27 49 0 0 chr4 35423210 35423251 -166905096 + AT_rich Low_complexity Low_complexity 1 41 0 181 384 129 23 chr4 35424126 35424877 -166903470 + L2 LINE L2 1986 2816 -498 193 300 0 0 chr4 35425142 35425192 -166903155 + L2 LINE L2 3138 3187 -85 244 261 0 22 chr4 35425237 35425329 -166903018 + L1MC4 LINE L1 6614 6703 -1339 23 33 0 0 chr4 35425341 35425371 -166902976 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr4 35425804 35425838 -166902509 + AT_rich Low_complexity Low_complexity 1 34 0 205 400 61 0 chr4 35425871 35425986 -166902361 - MIR SINE MIR -62 146 25 1964 119 7 0 chr4 35426033 35426311 -166902036 - AluSg1 SINE Alu -29 280 1 1549 93 0 0 chr4 35426529 35426745 -166901602 - L1PB1 LINE L1 0 6151 5936 796 262 14 5 chr4 35427039 35427253 -166901094 + MER20 DNA MER1_type 1 216 -3 513 269 46 101 chr4 35427442 35427769 -166900578 - MLT1I LTR MaLR 0 409 101 246 307 44 35 chr4 35428751 35428865 -166899482 + MIR SINE MIR 18 132 -76 1910 34 0 0 chr4 35428865 35429099 -166899248 - L1PA5 LINE L1 0 6154 5921 22 56 0 0 chr4 35429184 35429220 -166899127 + AT_rich Low_complexity Low_complexity 1 36 0 77 71 0 0 chr4 35429345 35429499 -166898848 + AT_rich Low_complexity Low_complexity 1 154 0 22 80 0 0 chr4 35429558 35429608 -166898739 + AT_rich Low_complexity Low_complexity 1 50 0 14169 182 30 12 chr4 35429924 35430641 -166897706 + L1MA1 LINE L1 3130 3832 -3889 223 28 56 0 chr4 35430641 35430677 -166897670 + (TA)n Simple_repeat Simple_repeat 2 39 0 14169 182 30 12 chr4 35430677 35430811 -166897536 + L1MA1 LINE L1 3832 3962 -3759 201 39 0 0 chr4 35430811 35430837 -166897510 + (CAA)n Simple_repeat Simple_repeat 1 26 0 14169 182 30 12 chr4 35430837 35434061 -166894286 + L1MA1 LINE L1 3962 7290 -431 1181 314 127 28 chr4 35434061 35434716 -166893631 - L2 LINE L2 -618 2696 1977 314 224 51 51 chr4 35435699 35435797 -166892550 - L2 LINE L2 -8 3305 3208 31 68 0 0 chr4 35436037 35436096 -166892251 + AT_rich Low_complexity Low_complexity 1 59 0 404 325 138 0 chr4 35436100 35436303 -166892044 - MIR SINE MIR -2 260 30 273 317 12 0 chr4 35436775 35436857 -166891490 - MER5A DNA MER1_type -83 106 24 959 153 21 98 chr4 35436865 35437101 -166891246 + MER20 DNA MER1_type 2 219 0 835 204 0 0 chr4 35437945 35438097 -166890250 + L1PB4 LINE L1 6005 6156 0 1161 41 35 0 chr4 35439177 35439349 -166888998 + (TTC)n Simple_repeat Simple_repeat 3 180 0 476 158 11 0 chr4 35439349 35439444 -166888903 + CT-rich Low_complexity Low_complexity 3 98 0 201 94 0 0 chr4 35440073 35440105 -166888242 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 22 56 0 0 chr4 35440441 35440477 -166887870 + AT_rich Low_complexity Low_complexity 1 36 0 291 118 29 15 chr4 35440485 35440553 -166887794 + (TA)n Simple_repeat Simple_repeat 2 70 0 191 36 36 0 chr4 35442140 35442168 -166886179 + (CAA)n Simple_repeat Simple_repeat 2 30 0 272 391 28 28 chr4 35442587 35442766 -166885581 + MIR SINE MIR 20 198 -64 198 0 0 0 chr4 35443505 35443527 -166884820 + (T)n Simple_repeat Simple_repeat 1 22 0 1838 86 0 0 chr4 35443542 35443775 -166884572 - AluSc SINE Alu -76 233 1 566 147 37 0 chr4 35443868 35443977 -166884370 + L1MB3 LINE L1 6067 6179 -4 28 29 0 0 chr4 35443977 35444012 -166884335 + AT_rich Low_complexity Low_complexity 1 35 0 936 261 49 23 chr4 35444185 35444615 -166883732 + L1MD1 LINE L1 2736 3176 -2970 1058 208 5 0 chr4 35444815 35445022 -166883325 - MER2 DNA MER2_type -136 209 2 2715 237 70 47 chr4 35445022 35445321 -166883026 + L1MD1 LINE L1 3175 3466 -2680 244 0 56 0 chr4 35445321 35445357 -166882990 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2715 237 70 47 chr4 35445357 35445412 -166882935 + L1MD1 LINE L1 3466 3518 -2628 1649 189 4 0 chr4 35445412 35445693 -166882654 - AluSx SINE Alu -30 282 1 2715 237 70 47 chr4 35445693 35446456 -166881891 + L1MD1 LINE L1 3518 4319 -1827 2618 202 15 67 chr4 35446497 35447210 -166881137 + L1MD1 LINE L1 5567 6242 0 25 0 0 0 chr4 35447224 35447249 -166881098 + AT_rich Low_complexity Low_complexity 1 25 0 267 31 0 0 chr4 35447313 35447345 -166881002 + (TG)n Simple_repeat Simple_repeat 2 33 0 1166 276 27 39 chr4 35447383 35447703 -166880644 + L1ME3A LINE L1 5592 5905 -265 2210 108 10 0 chr4 35447703 35448009 -166880338 + AluSg SINE Alu 1 309 -1 1166 276 27 39 chr4 35448009 35448202 -166880145 + L1ME3A LINE L1 5905 6099 -71 203 359 0 26 chr4 35448770 35448887 -166879460 - L3 LINE CR1 -869 708 595 477 345 26 22 chr4 35449678 35449910 -166878437 - MIR SINE MIR -10 252 20 1359 210 34 91 chr4 35450136 35450631 -166877716 - MLT1C LTR MaLR 0 467 1 482 377 8 23 chr4 35450779 35451036 -166877311 - MIR SINE MIR -2 260 8 21 71 0 0 chr4 35451582 35451624 -166876723 + AT_rich Low_complexity Low_complexity 1 42 0 1927 109 28 65 chr4 35451974 35452296 -166876051 + AluSx SINE Alu 1 310 -2 2540 191 29 16 chr4 35452423 35452973 -166875374 - MER89 LTR ERV1 -2 557 1 25 0 0 0 chr4 35453982 35454007 -166874340 + AT_rich Low_complexity Low_complexity 1 25 0 722 247 12 0 chr4 35454012 35454178 -166874169 - FRAM SINE Alu -8 168 1 633 194 8 61 chr4 35454648 35454842 -166873505 - L1MD1 LINE L1 -341 5823 5672 235 225 72 16 chr4 35454894 35454989 -166873358 - L1MCa LINE L1 -4257 2219 2094 1214 266 98 35 chr4 35455056 35455891 -166872456 - L1MCa LINE L1 -4503 1923 934 209 57 29 0 chr4 35455892 35455927 -166872420 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 2569 87 5 89 chr4 35455934 35456381 -166871966 - L1PB1 LINE L1 0 6151 5743 195 162 0 0 chr4 35456409 35456446 -166871901 + (CA)n Simple_repeat Simple_repeat 2 38 0 200 250 0 0 chr4 35456461 35456501 -166871846 + (TA)n Simple_repeat Simple_repeat 2 41 0 247 172 94 0 chr4 35456504 35456568 -166871779 - L1MC4 LINE L1 -1339 6703 6634 * 10125 217 125 5 chr4 35456541 35457890 -166870457 - L1P5 LINE L1 -360 6586 5400 185 0 40 0 chr4 35457890 35457915 -166870432 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 10125 217 125 5 chr4 35457915 35460281 -166868066 - L1P5 LINE L1 -1546 5400 1377 247 278 31 41 chr4 35460878 35460975 -166867372 - MIR SINE MIR -40 222 127 387 258 129 8 chr4 35462304 35462428 -166865919 + MLT1E1 LTR MaLR 1 139 -515 633 201 67 12 chr4 35462448 35462682 -166865665 + MLT1A1 LTR MaLR 28 365 0 1467 270 88 24 chr4 35462693 35463160 -166865187 + MLT1E2 LTR MaLR 74 570 -56 589 217 0 9 chr4 35463166 35463324 -166865023 + FLAM_C SINE Alu 4 160 0 281 197 16 0 chr4 35463324 35463385 -166864962 + MLT1E2 LTR MaLR 563 624 0 25 0 0 0 chr4 35463474 35463499 -166864848 + AT_rich Low_complexity Low_complexity 1 25 0 337 262 0 12 chr4 35463972 35464056 -166864291 + MLT1I LTR MaLR 323 405 -4 410 282 87 67 chr4 35464076 35464271 -166864076 + L2 LINE L2 2392 2590 -724 4595 202 54 89 chr4 35464285 35466182 -166862165 - MER52A LTR ERV1 -1 1754 1 1023 305 55 14 chr4 35466445 35466884 -166861463 + L1MC4a LINE L1 6503 6959 -849 1126 289 136 35 chr4 35467754 35468324 -166860023 + L2 LINE L2 1617 2267 -1047 1469 173 92 8 chr4 35468324 35468614 -166859733 - AluSx SINE Alu 0 312 1 1126 289 136 35 chr4 35468614 35468709 -166859638 + L2 LINE L2 2267 2351 -963 880 307 61 26 chr4 35468735 35469113 -166859234 + MLT1I LTR MaLR 17 407 -2 783 290 196 27 chr4 35469164 35469643 -166858704 + L2 LINE L2 2417 2976 -338 269 275 25 42 chr4 35469728 35469848 -166858499 + L2 LINE L2 3101 3218 -95 267 351 26 0 chr4 35469929 35470080 -166858267 + MER117 DNA MER1_type 4 158 -39 210 297 0 0 chr4 35470306 35470370 -166857977 + CT-rich Low_complexity Low_complexity 4 67 0 198 170 170 0 chr4 35470636 35470683 -166857664 + L2 LINE L2 3215 3269 -3 30 45 0 0 chr4 35471045 35471089 -166857258 + AT_rich Low_complexity Low_complexity 1 44 0 481 296 70 14 chr4 35472362 35472649 -166855698 - L1ME4a LINE L1 -274 5847 5545 21 57 0 0 chr4 35473367 35473402 -166854945 + AT_rich Low_complexity Low_complexity 1 35 0 1730 161 44 19 chr4 35473490 35473856 -166854491 - THE1C LTR MaLR 0 375 1 323 256 26 0 chr4 35473883 35473961 -166854386 + MIR SINE MIR 4 83 -179 379 271 57 29 chr4 35474137 35474277 -166854070 - L2 LINE L2 -8 3305 3162 1378 234 130 38 chr4 35474314 35474533 -166853814 - MLT2B1 LTR ERVL -8 512 314 213 39 0 0 chr4 35474533 35474559 -166853788 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1378 234 130 38 chr4 35474559 35474808 -166853539 - MLT2B1 LTR ERVL -206 314 1 1028 301 53 21 chr4 35474811 35475355 -166852992 - L2 LINE L2 -129 3184 2621 2168 147 31 6 chr4 35475361 35475716 -166852631 + THE1B LTR MaLR 1 364 0 9807 124 27 36 chr4 35475716 35477311 -166851036 + THE1B-int LTR MaLR 1 1580 0 1980 144 55 23 chr4 35477316 35477664 -166850683 + THE1B LTR MaLR 6 364 0 731 287 108 26 chr4 35477664 35478005 -166850342 - L2 LINE L2 -702 2612 2244 258 278 9 28 chr4 35478035 35478143 -166850204 + L1MCc LINE L1 24 129 -6294 219 146 0 0 chr4 35478655 35478696 -166849651 + (GA)n Simple_repeat Simple_repeat 2 42 0 717 311 27 14 chr4 35478774 35479067 -166849280 + L1MCc LINE L1 1132 1428 -4995 996 260 115 44 chr4 35479094 35479252 -166849095 + MLT1E LTR MaLR 26 171 -421 321 26 0 0 chr4 35479252 35479290 -166849057 + (TC)n Simple_repeat Simple_repeat 1 38 0 996 260 115 44 chr4 35479290 35479628 -166848719 + MLT1E LTR MaLR 171 582 -10 393 22 0 0 chr4 35480002 35480048 -166848299 + (TG)n Simple_repeat Simple_repeat 2 47 0 369 43 0 0 chr4 35480782 35480829 -166847518 + (TG)n Simple_repeat Simple_repeat 2 48 0 225 0 0 0 chr4 35481433 35481458 -166846889 + (TA)n Simple_repeat Simple_repeat 1 25 0 1353 238 75 19 chr4 35482864 35483238 -166845109 - MSTD LTR MaLR -1 395 1 1647 187 11 0 chr4 35483448 35483753 -166844594 + AluJb SINE Alu 1 308 0 2269 121 25 25 chr4 35483927 35484282 -166844065 + THE1A LTR MaLR 1 355 0 1667 83 4 13 chr4 35484305 35484533 -166843814 + THE1A-int LTR MaLR 1355 1580 0 2359 89 43 26 chr4 35484533 35484882 -166843465 + THE1A LTR MaLR 1 355 0 5583 156 23 7 chr4 35485467 35486875 -166841472 + L1PB1 LINE L1 4717 6148 -3 24 0 0 0 chr4 35486875 35486899 -166841448 + AT_rich Low_complexity Low_complexity 1 24 0 2599 173 34 97 chr4 35486948 35487783 -166840564 + MER31-int LTR ERV1 4167 4948 -3172 301 380 27 14 chr4 35487792 35488084 -166840263 + MER31-int LTR ERV1 2254 2549 -2098 1766 170 34 3 chr4 35488987 35489281 -166839066 + AluSx SINE Alu 3 305 -7 382 185 22 43 chr4 35489288 35489380 -166838967 + LTR23 LTR ERV1 1 90 -347 906 159 18 6 chr4 35489518 35489681 -166838666 + MER41E LTR ERV1 271 435 -77 1000 259 120 43 chr4 35490011 35490609 -166837738 + LTR48B LTR ERV1 1 644 0 2165 148 89 5 chr4 35490807 35491200 -166837147 + MSTA LTR MaLR 1 426 -2 531 250 27 22 chr4 35491276 35491460 -166836887 + MER31-int LTR ERV1 4058 4242 -694 1093 226 75 24 chr4 35491470 35491846 -166836501 + LTR37A LTR ERV1 5 399 -27 22 56 0 0 chr4 35492169 35492205 -166836142 + AT_rich Low_complexity Low_complexity 1 36 0 1286 255 114 10 chr4 35492578 35493028 -166835319 - MER110A LTR ERV1 0 468 1 198 0 0 0 chr4 35493630 35493652 -166834695 + (TG)n Simple_repeat Simple_repeat 1 22 0 289 282 32 90 chr4 35493674 35493862 -166834485 + MER92C LTR ERV1 5 181 -373 208 364 174 5 chr4 35494263 35494447 -166833900 + MIR SINE MIR 20 234 -28 3882 152 6 65 chr4 35494571 35495297 -166833050 + LTR8 LTR ERV1 1 683 -8 21 0 0 0 chr4 35496123 35496144 -166832203 + AT_rich Low_complexity Low_complexity 1 21 0 1930 154 82 55 chr4 35496331 35496747 -166831600 + LTR49 LTR ERV1 1 427 -168 774 130 0 46 chr4 35496767 35496898 -166831449 - AluSg/x SINE Alu -14 298 174 245 246 44 26 chr4 35496898 35497012 -166831335 + LTR48 LTR ERV1 622 737 -50 564 201 0 81 chr4 35497471 35497531 -166830816 - LTR24C LTR ERV1 -14 621 558 1757 150 55 41 chr4 35497531 35497897 -166830450 - THE1C LTR MaLR 0 375 5 564 201 0 81 chr4 35497897 35497985 -166830362 - LTR24C LTR ERV1 -77 558 485 1583 75 25 0 chr4 35498202 35498402 -166829945 + AluY SINE Alu 96 300 -11 21 0 0 0 chr4 35498523 35498544 -166829803 + AT_rich Low_complexity Low_complexity 1 21 0 333 333 67 62 chr4 35499101 35499635 -166828712 - LTR24C-int LTR ERV1 -2094 2553 2017 3323 151 19 0 chr4 35500256 35500773 -166827574 - MER1A DNA MER1_type 0 527 1 1008 173 156 72 chr4 35501288 35501634 -166826713 + THE1C LTR MaLR 1 375 0 261 391 78 6 chr4 35501695 35501874 -166826473 - LTR24C-int LTR ERV1 -4064 2737 2546 1318 20 0 0 chr4 35502025 35502176 -166826171 - AluYa5 SINE Alu -3 308 158 4711 153 10 9 chr4 35502372 35503189 -166825158 - L1PA16 LINE L1 -9 6157 5340 213 276 0 46 chr4 35504701 35504788 -166823559 + GA-rich Low_complexity Low_complexity 3 85 0 1887 129 39 0 chr4 35505343 35505623 -166822724 + AluSc SINE Alu 1 291 -18 433 285 50 62 chr4 35505839 35506347 -166822000 - LTR24C-int LTR ERV1 -4473 650 15 2346 169 142 12 chr4 35506361 35506919 -166821428 - LTR24C LTR ERV1 0 635 6 2556 57 0 0 chr4 35506959 35507260 -166821087 + AluY SINE Alu 1 301 -10 21 0 0 0 chr4 35507371 35507392 -166820955 + AT_rich Low_complexity Low_complexity 1 21 0 738 296 144 39 chr4 35507488 35508757 -166819590 - HAL1 LINE L1 -262 2245 844 25 0 0 0 chr4 35509276 35509301 -166819046 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr4 35509451 35509471 -166818876 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 939 308 64 21 chr4 35509475 35509703 -166818644 + MLT1D LTR MaLR 1 218 -287 2008 143 162 5 chr4 35509703 35510073 -166818274 + MSTA LTR MaLR 1 428 0 939 308 64 21 chr4 35510073 35510328 -166818019 + MLT1D LTR MaLR 218 505 0 1477 263 117 49 chr4 35510665 35511274 -166817073 + MLT1E1 LTR MaLR 1 650 -4 1502 97 5 14 chr4 35511325 35511532 -166816815 - AluSg/x SINE Alu -12 300 96 2533 209 13 0 chr4 35511693 35512157 -166816190 + MER70A LTR ERVL 3 472 0 2218 117 0 0 chr4 35512460 35512767 -166815580 + AluSx SINE Alu 1 307 -5 198 0 0 0 chr4 35512802 35512824 -166815523 + (TTTTA)n Simple_repeat Simple_repeat 1 22 0 1619 190 93 3 chr4 35512825 35513178 -166815169 - L1PB4 LINE L1 -17 6139 5755 296 246 0 36 chr4 35513586 35513696 -166814651 + A-rich Low_complexity Low_complexity 4 109 0 1608 199 10 7 chr4 35514056 35514358 -166813989 + AluJo SINE Alu 1 303 -9 1889 92 17 0 chr4 35514455 35514747 -166813600 - L1P3 LINE L1 -2904 3557 3261 13435 153 13 31 chr4 35515505 35518689 -166809658 - L1P3 LINE L1 -3204 3257 8 496 273 66 37 chr4 35519061 35519548 -166808799 - L1MC5 LINE L1 -193 7768 7268 1906 153 32 42 chr4 35519593 35519972 -166808375 + THE1C LTR MaLR 1 375 0 384 302 14 14 chr4 35520171 35520310 -166808037 - L1MC5 LINE L1 -1209 6752 6614 21 0 0 0 chr4 35520317 35520338 -166808009 + AT_rich Low_complexity Low_complexity 1 21 0 2298 196 7 5 chr4 35520526 35520959 -166807388 + Tigger2a DNA MER2_type 1 434 0 21 71 0 0 chr4 35520970 35521012 -166807335 + AT_rich Low_complexity Low_complexity 1 42 0 1648 178 49 35 chr4 35521589 35521959 -166806388 - THE1C LTR MaLR 0 375 1 8273 163 29 30 chr4 35521959 35523538 -166804809 - THE1C-int LTR MaLR 0 1580 4 1474 205 24 39 chr4 35523541 35523922 -166804425 - THE1C LTR MaLR 0 375 1 30 59 0 0 chr4 35524420 35524471 -166803876 + AT_rich Low_complexity Low_complexity 1 51 0 221 233 0 0 chr4 35525655 35525698 -166802649 + GA-rich Low_complexity Low_complexity 3 45 0 25 51 0 0 chr4 35525887 35525926 -166802421 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr4 35526094 35526125 -166802222 + AT_rich Low_complexity Low_complexity 1 31 0 306 0 0 0 chr4 35526583 35526617 -166801730 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 2179 155 55 2 chr4 35526619 35527038 -166801309 - LTR19A LTR ERV1 -45 441 1 28773 73 28 37 chr4 35527038 35527795 -166800552 - LTR19A-int LTR ERV1 0 5586 4823 2223 71 7 16 chr4 35527795 35528104 -166800243 + AluY SINE Alu 1 306 -5 28773 73 28 37 chr4 35528104 35530563 -166797784 - LTR19A-int LTR ERV1 -763 4823 2416 2188 92 0 0 chr4 35530563 35530857 -166797490 - AluY SINE Alu -4 307 14 28773 73 28 37 chr4 35530857 35531829 -166796518 - LTR19A-int LTR ERV1 -3170 2416 1436 5045 126 47 28 chr4 35531823 35532773 -166795574 - LTR19A-int LTR ERV1 -4458 1128 278 * 990 118 0 20 chr4 35532784 35532936 -166795411 - LTR19A-int LTR ERV1 -5437 149 1 551 156 28 0 chr4 35532937 35533046 -166795301 - LTR19A LTR ERV1 -1 485 374 408 306 109 50 chr4 35534085 35534682 -166793665 + L1MC2 LINE L1 4199 4830 -1316 219 362 40 13 chr4 35534811 35534960 -166793387 + L2 LINE L2 2283 2435 -879 1671 39 0 0 chr4 35535456 35535662 -166792685 - L1PA4 LINE L1 -2 6153 5948 267 0 0 0 chr4 35535662 35535694 -166792653 + L1PA4 LINE L1 5930 5961 -211 531 386 67 18 chr4 35536775 35537210 -166791137 + L2 LINE L2 332 787 -2527 2226 96 7 3 chr4 35537269 35537572 -166790775 - AluY SINE Alu -7 304 1 786 272 61 3 chr4 35537655 35538030 -166790317 - L1M4 LINE L1 -1621 4525 4129 508 351 57 17 chr4 35538043 35538339 -166790008 + L2 LINE L2 2642 2949 -365 371 282 64 0 chr4 35538687 35538797 -166789550 + L2 LINE L2 3191 3307 -6 25 75 0 0 chr4 35538913 35538966 -166789381 + AT_rich Low_complexity Low_complexity 1 53 0 202 291 0 0 chr4 35540397 35540452 -166787895 + A-rich Low_complexity Low_complexity 4 58 0 1197 296 128 28 chr4 35540909 35541480 -166786867 - L2 LINE L2 -756 2558 1931 2207 169 21 30 chr4 35542605 35543037 -166785310 + MSTA LTR MaLR 1 428 0 1956 159 0 6 chr4 35543729 35544043 -166784304 - AluSx SINE Alu 0 312 1 2635 191 162 21 chr4 35544125 35545014 -166783333 + L1MC2 LINE L1 5276 6336 -8 1945 118 0 11 chr4 35545288 35545568 -166782779 - AluSq SINE Alu -36 277 1 31 26 0 0 chr4 35546022 35546060 -166782287 + AT_rich Low_complexity Low_complexity 1 38 0 25 51 0 0 chr4 35546887 35546926 -166781421 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr4 35547020 35547049 -166781298 + AT_rich Low_complexity Low_complexity 1 29 0 1833 167 140 16 chr4 35547870 35548248 -166780099 - MSTA LTR MaLR -3 425 1 1179 271 47 0 chr4 35548714 35549035 -166779312 - MER58B DNA MER1_type 0 341 6 1289 202 38 59 chr4 35550021 35550393 -166777954 + MLT1A1 LTR MaLR 2 365 0 2135 128 18 39 chr4 35551055 35551438 -166776909 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr4 35551925 35551953 -166776394 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 35552838 35552860 -166775487 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chr4 35552910 35552951 -166775396 + AT_rich Low_complexity Low_complexity 1 41 0 252 0 0 0 chr4 35552991 35553019 -166775328 + (CA)n Simple_repeat Simple_repeat 2 29 0 564 298 139 5 chr4 35553492 35553700 -166774647 - MIR SINE MIR -3 259 24 1980 136 0 0 chr4 35554229 35554515 -166773832 + AluSx SINE Alu 1 286 -26 252 100 0 0 chr4 35554515 35554555 -166773792 + (TA)n Simple_repeat Simple_repeat 2 41 0 2588 33 0 3 chr4 35555497 35555802 -166772545 + AluY SINE Alu 2 305 -6 21 36 0 0 chr4 35556861 35556889 -166771458 + AT_rich Low_complexity Low_complexity 1 28 0 204 318 71 80 chr4 35556940 35557179 -166771168 + MIR SINE MIR 15 251 -11 236 194 65 32 chr4 35557340 35557402 -166770945 - L1MC/D LINE L1 -587 5841 5778 1018 224 109 37 chr4 35558500 35558822 -166769525 - MER2 DNA MER2_type 0 345 1 195 306 81 48 chr4 35558831 35558955 -166769392 - MIR SINE MIR -112 150 23 1730 204 29 8 chr4 35559361 35559743 -166768604 - MLT1B LTR MaLR 0 390 1 249 163 0 0 chr4 35559874 35559923 -166768424 + (CA)n Simple_repeat Simple_repeat 2 50 0 21 57 0 0 chr4 35560853 35560888 -166767459 + AT_rich Low_complexity Low_complexity 1 35 0 315 294 37 0 chr4 35561492 35561601 -166766746 + MER5B DNA MER1_type 63 175 -3 266 307 63 16 chr4 35562221 35562348 -166765999 - L1MC4 LINE L1 -156 7886 7754 1251 212 36 33 chr4 35562348 35562655 -166765692 - MLT1A2 LTR MaLR 0 374 67 406 277 87 74 chr4 35562663 35563053 -166765294 - L1MC4 LINE L1 -939 7103 6709 180 0 0 0 chr4 35563055 35563075 -166765272 + (TG)n Simple_repeat Simple_repeat 2 21 0 270 289 0 0 chr4 35563086 35563162 -166765185 - L1MC4 LINE L1 -1473 6569 6494 435 254 15 9 chr4 35564191 35564357 -166763990 - L1MC/D LINE L1 -816 5417 5249 403 204 43 11 chr4 35564490 35564583 -166763764 - MLT1D LTR MaLR 0 390 295 632 252 21 58 chr4 35564623 35564865 -166763482 - MLT1D LTR MaLR -266 239 7 9462 48 2 0 chr4 35564963 35566175 -166762172 - L1P LINE L1 -2681 3465 2252 7224 50 2 0 chr4 35566175 35567131 -166761216 + L1PA5 LINE L1 5197 6154 0 377 202 83 0 chr4 35567207 35567316 -166761031 + L1ME LINE L1 5380 5497 -669 823 264 35 13 chr4 35567384 35567695 -166760652 - L1MC/D LINE L1 -1067 5148 4831 1169 217 65 12 chr4 35567924 35568261 -166760086 - L1MA7 LINE L1 0 6291 5937 1730 252 147 50 chr4 35568310 35569797 -166758550 - L1MC/D LINE L1 -1576 4639 3009 234 308 55 64 chr4 35569840 35570480 -166757867 - L1MC/D LINE L1 -3393 2822 2189 447 286 73 17 chr4 35570494 35570795 -166757552 - L1MC/D LINE L1 -4220 2176 1859 257 279 76 68 chr4 35570944 35571353 -166756994 - L1MEc LINE L1 -5018 1187 807 216 0 0 0 chr4 35571417 35571441 -166756906 + (TA)n Simple_repeat Simple_repeat 2 25 0 1567 125 94 4 chr4 35571614 35571870 -166756477 - AluSx SINE Alu -8 304 26 24 53 0 0 chr4 35572307 35572345 -166756002 + AT_rich Low_complexity Low_complexity 1 38 0 2135 95 0 29 chr4 35572603 35572919 -166755428 + AluY SINE Alu 1 307 -4 21 57 0 0 chr4 35573448 35573483 -166754864 + AT_rich Low_complexity Low_complexity 1 35 0 201 133 0 0 chr4 35574336 35574366 -166753981 + (TG)n Simple_repeat Simple_repeat 1 30 0 190 222 0 0 chr4 35574765 35574801 -166753546 + MIR SINE MIR 70 105 -157 306 73 0 0 chr4 35574874 35574915 -166753432 + (CA)n Simple_repeat Simple_repeat 2 42 0 1289 248 72 62 chr4 35574924 35575407 -166752940 + MLT1D LTR MaLR 6 493 -12 255 130 0 37 chr4 35575423 35575477 -166752870 - L1MC4 LINE L1 -1339 6703 6652 2259 133 12 28 chr4 35575794 35576194 -166752153 - L1PA13 LINE L1 -8 6155 5762 334 310 30 61 chr4 35576268 35576410 -166751937 - MIR SINE MIR -19 243 107 2714 187 14 36 chr4 35576410 35576972 -166751375 - MLT2B3 LTR ERVL 0 554 5 334 310 30 61 chr4 35576972 35577026 -166751321 - MIR SINE MIR -155 107 53 685 320 84 63 chr4 35577064 35577178 -166751169 - L2 LINE L2 0 3313 3203 194 0 39 0 chr4 35577178 35577204 -166751143 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 836 228 109 0 chr4 35577212 35577414 -166750933 - MER58A DNA MER1_type 0 224 1 685 320 84 63 chr4 35577414 35577975 -166750372 - L2 LINE L2 -116 3197 2628 524 215 0 9 chr4 35578186 35578293 -166750054 - FRAM SINE Alu -25 151 46 1560 179 3 58 chr4 35578308 35578638 -166749709 - AluJo SINE Alu 0 312 1 698 203 92 20 chr4 35578662 35578815 -166749532 - FRAM SINE Alu -2 164 1 2777 244 38 73 chr4 35580587 35581500 -166746847 + L1MCa LINE L1 4 862 -5183 741 202 49 30 chr4 35581489 35581736 -166746611 + L1MCa LINE L1 1675 2023 -4541 * 1295 183 58 0 chr4 35581725 35582020 -166746327 + L1MCa LINE L1 2304 2615 -3949 1784 179 61 25 chr4 35582050 35582392 -166745955 + L1MC2 LINE L1 5918 6279 -65 4586 142 52 13 chr4 35582392 35583187 -166745160 + LTR1B LTR ERV1 1 826 0 1784 179 61 25 chr4 35583187 35583251 -166745096 + L1MC2 LINE L1 6279 6339 -5 324 149 15 30 chr4 35583693 35583760 -166744587 - MSTB1 LTR MaLR -1 431 366 * 1013 177 35 35 chr4 35583750 35583982 -166744365 - MSTB1 LTR MaLR -200 232 1 22 56 0 0 chr4 35584291 35584327 -166744020 + AT_rich Low_complexity Low_complexity 1 36 0 425 305 109 0 chr4 35584723 35584897 -166743450 + MIR SINE MIR 70 262 0 23 33 0 0 chr4 35584901 35584931 -166743416 + AT_rich Low_complexity Low_complexity 1 30 0 5892 77 16 0 chr4 35585040 35585830 -166742517 + L1PA7 LINE L1 5352 6154 0 458 322 35 22 chr4 35585914 35586141 -166742206 - L3 LINE CR1 -112 1465 1236 237 308 35 133 chr4 35586144 35586430 -166741917 - L3 LINE CR1 -1017 560 303 2174 107 13 0 chr4 35586621 35586929 -166741418 - AluSp SINE Alu 0 313 2 22 35 0 0 chr4 35587628 35587657 -166740690 + AT_rich Low_complexity Low_complexity 1 29 0 221 241 35 69 chr4 35587880 35587967 -166740380 - L2 LINE L2 -1 3312 3229 234 419 23 0 chr4 35588284 35588413 -166739934 + L2 LINE L2 3103 3234 -38 219 154 26 0 chr4 35588561 35588600 -166739747 + CT-rich Low_complexity Low_complexity 2 41 0 23 54 0 0 chr4 35589240 35589277 -166739070 + AT_rich Low_complexity Low_complexity 1 37 0 338 346 35 48 chr4 35590117 35590345 -166738002 + L2 LINE L2 2685 2909 -405 1876 147 48 34 chr4 35590924 35591279 -166737068 + THE1B LTR MaLR 1 360 -4 10319 118 32 6 chr4 35591284 35592822 -166735525 + THE1B-int LTR MaLR 2 1580 0 1774 179 33 33 chr4 35592822 35593186 -166735161 + THE1B LTR MaLR 1 364 0 1071 255 292 69 chr4 35593358 35594252 -166734095 - MER52A LTR ERV1 0 1755 663 192 267 0 0 chr4 35595817 35595877 -166732470 + (TA)n Simple_repeat Simple_repeat 2 61 0 22 70 0 0 chr4 35596095 35596138 -166732209 + AT_rich Low_complexity Low_complexity 1 43 0 194 140 0 20 chr4 35596606 35596656 -166731691 + (CA)n Simple_repeat Simple_repeat 2 50 0 844 43 17 8 chr4 35596814 35596931 -166731416 + (TTTC)n Simple_repeat Simple_repeat 3 120 0 813 186 0 0 chr4 35596944 35597084 -166731263 - FRAM SINE Alu -16 160 21 256 206 11 11 chr4 35597307 35597399 -166730948 + (TA)n Simple_repeat Simple_repeat 2 93 0 23 33 0 0 chr4 35599527 35599557 -166728790 + AT_rich Low_complexity Low_complexity 1 30 0 331 299 8 30 chr4 35599848 35599982 -166728365 - L2 LINE L2 -33 3280 3150 6091 154 51 28 chr4 35600033 35600966 -166727381 - Tigger3b DNA MER2_type -1798 1230 263 206 62 31 0 chr4 35600966 35600998 -166727349 + (TTA)n Simple_repeat Simple_repeat 3 35 0 6091 154 51 28 chr4 35600998 35601262 -166727085 - Tigger3b DNA MER2_type -2765 263 6 191 370 25 0 chr4 35601786 35601867 -166726480 - L2 LINE L2 -4 3268 3186 332 119 17 0 chr4 35601948 35602007 -166726340 + GA-rich Low_complexity Low_complexity 4 63 0 962 108 0 43 chr4 35602007 35602193 -166726154 + (GAGAA)n Simple_repeat Simple_repeat 1 178 0 31 0 0 0 chr4 35602650 35602681 -166725666 + AT_rich Low_complexity Low_complexity 1 31 0 261 306 0 14 chr4 35603154 35603226 -166725121 + L3 LINE CR1 1375 1445 -132 1359 150 127 8 chr4 35604050 35604310 -166724037 + L1MC1 LINE L1 6023 6313 -20 1730 196 113 30 chr4 35604333 35604803 -166723544 - LTR22 LTR ERVK 0 509 1 667 317 186 33 chr4 35604827 35605560 -166722787 - L2 LINE L2 -212 3101 2259 225 270 135 0 chr4 35605617 35605706 -166722641 - L2 LINE L2 -1319 1995 1895 2671 33 0 0 chr4 35606376 35606682 -166721665 - AluY SINE Alu -5 306 1 9286 191 23 7 chr4 35608517 35611133 -166717214 + L1PA15-16 LINE L1 1 2426 -4423 474 157 0 0 chr4 35611133 35611216 -166717131 + L1PA16 LINE L1 6073 6155 -11 8195 244 36 32 chr4 35611246 35618019 -166710328 - L1PB4 LINE L1 0 6858 14 2444 60 3 0 chr4 35618044 35618344 -166710003 - AluY SINE Alu -8 303 3 227 178 0 0 chr4 35618418 35618463 -166709884 + GA-rich Low_complexity Low_complexity 1 45 0 32 91 0 0 chr4 35619038 35619126 -166709221 + AT_rich Low_complexity Low_complexity 1 88 0 23 68 0 0 chr4 35619180 35619224 -166709123 + AT_rich Low_complexity Low_complexity 1 44 0 239 221 0 52 chr4 35621141 35621218 -166707129 + L1M4 LINE L1 4487 4559 -1587 2137 123 0 10 chr4 35621629 35621937 -166706410 + AluSq SINE Alu 1 305 -8 209 365 0 0 chr4 35622403 35622455 -166705892 + L2 LINE L2 3160 3211 -61 24 53 0 0 chr4 35622753 35622791 -166705556 + AT_rich Low_complexity Low_complexity 1 38 0 1681 210 22 11 chr4 35623804 35624166 -166704181 + MLT1C LTR MaLR 98 463 -4 21 36 0 0 chr4 35625771 35625799 -166702548 + AT_rich Low_complexity Low_complexity 1 28 0 25 75 0 0 chr4 35627271 35627324 -166701023 + AT_rich Low_complexity Low_complexity 1 53 0 23 0 0 0 chr4 35627887 35627910 -166700437 + AT_rich Low_complexity Low_complexity 1 23 0 361 200 0 12 chr4 35628420 35628500 -166699847 - MLT1J2 LTR MaLR -2 448 370 25 31 0 0 chr4 35629020 35629052 -166699295 + AT_rich Low_complexity Low_complexity 1 32 0 183 42 0 0 chr4 35629176 35629200 -166699147 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 270 0 0 0 chr4 35629199 35629229 -166699118 + (CA)n Simple_repeat Simple_repeat 1 30 0 234 62 0 0 chr4 35629229 35629261 -166699086 + (GA)n Simple_repeat Simple_repeat 1 32 0 426 373 11 16 chr4 35629522 35629707 -166698640 - MER5A DNA MER1_type -2 187 4 276 390 32 26 chr4 35629927 35630081 -166698266 + L2 LINE L2 3118 3272 0 525 323 90 22 chr4 35630324 35630547 -166697800 + MIR SINE MIR 1 238 -24 282 340 32 63 chr4 35630971 35631224 -166697123 - L2 LINE L2 -385 2929 2685 2339 89 43 26 chr4 35632471 35632820 -166695527 + THE1A LTR MaLR 1 355 0 202 291 0 0 chr4 35633641 35633696 -166694651 + T-rich Low_complexity Low_complexity 4 58 0 276 391 78 6 chr4 35634551 35634730 -166693617 - MER89-int LTR ERV1 -4064 2737 2546 1122 52 0 19 chr4 35634876 35635031 -166693316 - AluYa5 SINE Alu 0 311 160 404 274 28 62 chr4 35635221 35635509 -166692838 - L1PA16 LINE L1 0 6166 5889 244 0 56 0 chr4 35636217 35636253 -166692094 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 277 146 0 0 chr4 35636259 35636300 -166692047 + L1M4 LINE L1 3519 3559 -2587 1507 178 4 11 chr4 35636308 35636589 -166691758 - AluSc SINE Alu -30 279 1 786 272 61 3 chr4 35636672 35637047 -166691300 - L1M4 LINE L1 -1621 4525 4129 450 368 55 16 chr4 35637060 35637370 -166690977 + L2 LINE L2 2642 2963 -351 6424 235 40 7 chr4 35637666 35638517 -166689830 - L1 LINE L1 -863 5283 4461 185 0 40 0 chr4 35638517 35638542 -166689805 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 6424 235 40 7 chr4 35638542 35639436 -166688911 - L1 LINE L1 -1685 4461 3482 373 371 97 11 chr4 35640378 35640564 -166687783 - MIR SINE MIR -12 250 49 289 357 9 0 chr4 35641026 35641138 -166687209 - L2 LINE L2 -1 3312 3200 475 311 0 0 chr4 35641214 35641349 -166686998 - MIR SINE MIR -16 246 112 3437 260 60 51 chr4 35641386 35642414 -166685933 - L1MC2 LINE L1 -9 6335 5298 684 181 90 21 chr4 35642592 35642736 -166685611 - FRAM SINE Alu -22 154 1 565 309 141 65 chr4 35643170 35643588 -166684759 - LTR67 LTR ERVL 0 557 108 2281 55 0 24 chr4 35643606 35643938 -166684409 - AluY SINE Alu 0 325 1 314 223 87 10 chr4 35644168 35644271 -166684076 + MLT1H LTR MaLR 48 158 -391 21 57 0 0 chr4 35644960 35644995 -166683352 + AT_rich Low_complexity Low_complexity 1 35 0 2327 73 7 7 chr4 35645519 35645822 -166682525 + AluY SINE Alu 1 303 -8 25 65 0 0 chr4 35646208 35646254 -166682093 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr4 35646541 35646563 -166681784 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 35647109 35647133 -166681214 + AT_rich Low_complexity Low_complexity 1 24 0 1694 182 29 18 chr4 35647896 35648236 -166680111 - MER2 DNA MER2_type 0 344 1 230 218 0 0 chr4 35649466 35649521 -166678826 - LTR66 LTR ERVL -162 448 394 23 54 0 0 chr4 35649615 35649652 -166678695 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr4 35650182 35650219 -166678128 + AT_rich Low_complexity Low_complexity 1 37 0 1666 169 20 123 chr4 35650751 35651384 -166676963 - LOR1-int LTR ERV1 -3384 4736 4169 2421 123 19 6 chr4 35651456 35651822 -166676525 - THE1C LTR MaLR 0 375 5 5426 152 38 7 chr4 35651825 35652737 -166675610 - THE1C-int LTR MaLR 0 1580 640 207 0 0 0 chr4 35652840 35652863 -166675484 + (A)n Simple_repeat Simple_repeat 1 23 0 9945 187 30 29 chr4 35652864 35653118 -166675229 - L1PA15-16 LINE L1 -4173 2676 2424 1722 146 13 39 chr4 35653118 35653426 -166674921 - AluSg SINE Alu -10 300 1 9945 187 30 29 chr4 35653426 35655302 -166673045 - L1PA15-16 LINE L1 -4425 2424 709 2819 258 30 8 chr4 35655300 35656164 -166672183 - L1M4 LINE L1 -929 5217 4335 * 2565 96 3 6 chr4 35656236 35656592 -166671755 - THE1A LTR MaLR 0 355 1 620 290 52 58 chr4 35656767 35657370 -166670977 - L1MCa LINE L1 -4580 2027 1246 7012 159 65 2 chr4 35657370 35658592 -166669755 - HSMAR2 DNA Mariner -2 1300 3 475 308 70 9 chr4 35658595 35658809 -166669538 - L1MCa LINE L1 -5179 1247 1021 208 222 0 0 chr4 35659454 35659499 -166668848 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 25 0 0 0 chr4 35660668 35660693 -166667654 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr4 35662759 35662802 -166665545 + AT_rich Low_complexity Low_complexity 1 43 0 180 0 0 0 chr4 35662822 35662842 -166665505 + (TA)n Simple_repeat Simple_repeat 1 20 0 2195 109 0 13 chr4 35662916 35663218 -166665129 - AluSx SINE Alu -12 300 3 322 185 215 0 chr4 35663573 35663638 -166664709 - ERVL LTR ERVL -3358 2406 2328 621 225 6 71 chr4 35664456 35664638 -166663709 - MER58B DNA MER1_type 0 341 172 297 281 9 26 chr4 35665188 35665302 -166663045 - LTR33 LTR ERVL 0 521 410 1132 165 106 145 chr4 35665507 35665894 -166662453 + MER57A LTR ERV1 1 372 -31 1588 175 7 21 chr4 35665896 35666187 -166662160 - AluJo SINE Alu -13 299 13 24 32 0 0 chr4 35667289 35667320 -166661027 + AT_rich Low_complexity Low_complexity 1 31 0 28 0 0 0 chr4 35668982 35669010 -166659337 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 64 chr4 35670241 35670288 -166658059 + AT_rich Low_complexity Low_complexity 1 44 0 1193 100 58 5 chr4 35670530 35670715 -166657632 + L1PA7 LINE L1 4059 4254 -1888 2237 81 0 0 chr4 35670715 35670991 -166657356 + L1PA7 LINE L1 5858 6153 -1 903 263 63 76 chr4 35671492 35672016 -166656331 - MLT1F LTR MaLR 0 542 26 181 330 147 9 chr4 35673021 35673130 -166655217 - MIR3 SINE MIR -73 135 12 230 350 0 22 chr4 35673411 35673548 -166654799 + (CATATA)n Simple_repeat Simple_repeat 5 138 0 2385 78 0 0 chr4 35673647 35673953 -166654394 - AluY SINE Alu -4 307 2 212 329 31 50 chr4 35674227 35674388 -166653959 - L2 LINE L2 -457 2857 2700 23 54 0 0 chr4 35674395 35674432 -166653915 + AT_rich Low_complexity Low_complexity 1 37 0 537 250 27 124 chr4 35674444 35674816 -166653531 - L2 LINE L2 -575 2739 2404 315 373 45 10 chr4 35675192 35675393 -166652954 + MIR SINE MIR 45 252 -10 267 310 139 23 chr4 35676062 35676191 -166652156 - MIR SINE MIR -70 192 49 202 113 19 19 chr4 35677939 35677992 -166650355 + T-rich Low_complexity Low_complexity 3 55 0 1412 273 56 73 chr4 35678293 35678882 -166649465 + MER45C DNA AcHobo 30 608 -345 1184 126 11 0 chr4 35679454 35679629 -166648718 + AluSg/x SINE Alu 136 312 0 184 377 52 0 chr4 35680427 35680504 -166647843 - MIR SINE MIR -122 140 60 333 289 0 39 chr4 35682109 35682213 -166646134 + MIR SINE MIR 54 153 -55 1278 205 15 11 chr4 35683624 35683897 -166644450 + AluJo SINE Alu 32 305 -7 230 275 43 0 chr4 35683965 35684034 -166644313 + MLT1K LTR MaLR 505 576 -12 2099 112 11 0 chr4 35684349 35684634 -166643713 + AluSg SINE Alu 1 288 -22 1762 59 0 13 chr4 35686187 35686424 -166641923 + L1PA5 LINE L1 5920 6153 -1 25 0 0 0 chr4 35686918 35686943 -166641404 + AT_rich Low_complexity Low_complexity 1 25 0 430 309 148 9 chr4 35687168 35687385 -166640962 - MIR SINE MIR -6 256 10 873 278 60 22 chr4 35687656 35688023 -166640324 - L2 LINE L2 0 3313 2933 597 76 0 0 chr4 35688039 35688118 -166640229 + MADE1 DNA Mariner 1 79 -1 270 216 214 27 chr4 35688315 35688427 -166639920 + MIR SINE MIR 59 192 -16 307 171 171 13 chr4 35690498 35690574 -166637773 - MIR SINE MIR -173 89 2 22 0 0 0 chr4 35690690 35690712 -166637635 + AT_rich Low_complexity Low_complexity 1 22 0 182 333 0 0 chr4 35691118 35691172 -166637175 - L2 LINE L2 0 3272 3219 1489 202 41 3 chr4 35692325 35692617 -166635730 - AluJo SINE Alu -9 303 1 21 57 0 0 chr4 35692698 35692733 -166635614 + AT_rich Low_complexity Low_complexity 1 35 0 308 263 0 13 chr4 35693327 35693403 -166634944 - MER5C DNA MER1_type -248 76 2 230 298 21 89 chr4 35694272 35694463 -166633884 + L2 LINE L2 3136 3313 0 201 171 0 0 chr4 35694911 35694946 -166633401 + (TA)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr4 35695867 35695890 -166632457 + AT_rich Low_complexity Low_complexity 1 23 0 2141 120 0 3 chr4 35696361 35696662 -166631685 - AluSq SINE Alu -13 300 1 199 328 57 52 chr4 35697000 35697192 -166631155 - L3 LINE CR1 -351 1226 1034 1255 193 34 121 chr4 35697367 35697875 -166630472 + MER31B LTR ERV1 1 659 -2 528 243 13 105 chr4 35698430 35698669 -166629678 + L2 LINE L2 3097 3313 0 820 232 100 25 chr4 35698739 35699101 -166629246 - LTR29 LTR ERV1 -2 609 236 24 67 0 0 chr4 35700007 35700052 -166628295 + AT_rich Low_complexity Low_complexity 1 45 0 1116 187 97 19 chr4 35700338 35700606 -166627741 - AluJo SINE Alu -11 301 13 360 274 103 17 chr4 35700947 35701122 -166627225 + L1ME3A LINE L1 5763 5952 -218 238 203 17 17 chr4 35701397 35701456 -166626891 + (CA)n Simple_repeat Simple_repeat 2 60 0 21 36 0 0 chr4 35701460 35701488 -166626859 + AT_rich Low_complexity Low_complexity 1 28 0 236 148 19 19 chr4 35701787 35701841 -166626506 + (TTG)n Simple_repeat Simple_repeat 1 54 0 588 220 56 59 chr4 35702090 35702417 -166625930 - LTR46 LTR ERV1 -30 430 3 220 298 93 19 chr4 35702603 35702764 -166625583 - MIR SINE MIR -2 260 88 192 371 28 7 chr4 35702869 35703012 -166625335 + MIR SINE MIR 106 251 -11 22 35 0 0 chr4 35703540 35703569 -166624778 + AT_rich Low_complexity Low_complexity 1 29 0 200 222 0 0 chr4 35704087 35704132 -166624215 + (TA)n Simple_repeat Simple_repeat 1 45 0 218 355 132 8 chr4 35704152 35704273 -166624074 - L2 LINE L2 -4 3268 3133 216 0 0 0 chr4 35704528 35704552 -166623795 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1627 240 32 45 chr4 35704845 35705383 -166622964 - LTR55 LTR ERV -17 531 1 844 122 0 30 chr4 35706252 35706383 -166621964 + FLAM_C SINE Alu 1 127 -6 391 280 286 3 chr4 35707046 35707357 -166620990 + L1ME2 LINE L1 4522 4920 -1226 985 210 5 20 chr4 35707357 35707584 -166620763 + AluJo SINE Alu 86 309 0 2245 255 97 42 chr4 35707614 35708769 -166619578 + L1ME2 LINE L1 4942 6148 -16 21 0 0 0 chr4 35709381 35709402 -166618945 + AT_rich Low_complexity Low_complexity 1 21 0 589 308 51 21 chr4 35709513 35709747 -166618600 - MIR SINE MIR -16 246 6 2314 137 8 20 chr4 35710272 35710665 -166617682 - L1PA15 LINE L1 -2 6163 5776 706 300 56 32 chr4 35710877 35711411 -166616936 - L1M4 LINE L1 -2271 3875 3329 1106 185 9 31 chr4 35711453 35711675 -166616672 - AluJb SINE Alu -14 298 82 7401 35 41 0 chr4 35711840 35713031 -166615316 - L1PA5 LINE L1 -3 6151 4944 533 56 0 0 chr4 35713031 35713102 -166615245 + L1PA5 LINE L1 4861 4931 -1215 1777 199 14 22 chr4 35713111 35713663 -166614684 - L1PA15-16 LINE L1 -3637 2509 1955 2459 193 112 83 chr4 35713947 35714832 -166613515 - LTR28 LTR ERV1 0 1020 1 2797 10 0 0 chr4 35714942 35715253 -166613094 + AluYa5 SINE Alu 1 311 0 185 0 40 0 chr4 35715371 35715396 -166612951 + (GGAA)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr4 35716462 35716484 -166611863 + AT_rich Low_complexity Low_complexity 1 22 0 665 159 0 58 chr4 35716775 35716913 -166611434 - FLAM_C SINE Alu 0 133 4 24 32 0 0 chr4 35717086 35717117 -166611230 + AT_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr4 35717178 35717217 -166611130 + AT_rich Low_complexity Low_complexity 1 39 0 242 189 0 38 chr4 35717456 35717509 -166610838 - L2 LINE L2 -5 3267 3217 1063 292 69 14 chr4 35717673 35718108 -166610239 - LTR40b LTR ERVL 0 462 4 473 326 26 26 chr4 35718251 35718444 -166609903 - MLT1I LTR MaLR -169 240 48 340 107 40 208 chr4 35719434 35719583 -166608764 - L1MA9 LINE L1 -1 6311 6188 351 183 10 19 chr4 35719852 35719956 -166608391 + CT-rich Low_complexity Low_complexity 4 106 0 1927 228 59 29 chr4 35720011 35720499 -166607848 - MLT1D LTR MaLR 0 505 3 395 38 19 0 chr4 35720553 35720606 -166607741 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 3020 164 33 2 chr4 35721470 35721981 -166606366 - MER1A DNA MER1_type 0 527 1 234 342 38 13 chr4 35722974 35723124 -166605223 + MIR SINE MIR 3 157 -61 1359 235 39 28 chr4 35723139 35723310 -166605037 - MLT1B LTR MaLR -2 388 220 388 156 0 13 chr4 35723310 35723387 -166604960 - MADE1 DNA Mariner 0 80 5 1359 235 39 28 chr4 35723387 35723573 -166604774 - MLT1B LTR MaLR -170 220 27 268 277 8 42 chr4 35725809 35725928 -166602419 + MLT1K LTR MaLR 47 161 -388 1714 151 37 0 chr4 35726188 35726306 -166602041 + AluSx SINE Alu 3 115 -198 278 0 54 0 chr4 35726306 35726343 -166602004 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1714 151 37 0 chr4 35726343 35726525 -166601822 + AluSx SINE Alu 115 313 0 359 333 34 0 chr4 35726686 35726803 -166601544 + L2 LINE L2 3187 3307 -6 300 313 41 27 chr4 35727293 35727440 -166600907 + MLT1K LTR MaLR 329 477 -111 21 0 0 0 chr4 35727481 35727502 -166600845 + AT_rich Low_complexity Low_complexity 1 21 0 245 368 53 8 chr4 35727651 35727784 -166600563 - L2 LINE L2 -806 2508 2370 586 315 48 23 chr4 35728080 35728316 -166600031 - MIR SINE MIR -21 241 2 334 333 103 0 chr4 35728416 35728533 -166599814 - MIR3 SINE MIR -39 169 41 222 37 0 0 chr4 35728903 35728930 -166599417 + (CA)n Simple_repeat Simple_repeat 1 27 0 344 305 227 39 chr4 35729881 35730242 -166598105 - MLT1A1 LTR MaLR 0 549 121 1401 213 3 11 chr4 35730617 35730903 -166597444 - AluJo SINE Alu -26 286 3 1946 147 0 0 chr4 35731043 35731328 -166597019 + AluSx SINE Alu 1 285 -27 23 0 0 0 chr4 35731853 35731876 -166596471 + AT_rich Low_complexity Low_complexity 1 23 0 40 49 0 0 chr4 35734509 35734570 -166593777 + AT_rich Low_complexity Low_complexity 1 61 0 5090 174 22 24 chr4 35734610 35735646 -166592701 - L1 LINE L1 -1796 4350 3317 228 67 0 0 chr4 35735679 35735709 -166592638 + (TA)n Simple_repeat Simple_repeat 1 30 0 2272 173 82 46 chr4 35735726 35735974 -166592373 + L1MA6 LINE L1 5743 5981 -319 3457 146 0 6 chr4 35735974 35736503 -166591844 - MER1A DNA MER1_type -1 526 1 2272 173 82 46 chr4 35736503 35736793 -166591554 + L1MA6 LINE L1 5981 6300 0 1010 269 77 76 chr4 35736799 35737432 -166590915 - L1ME3A LINE L1 -72 6098 5465 255 222 30 50 chr4 35737613 35737712 -166590635 - L1ME3A LINE L1 -873 5273 5177 523 271 67 61 chr4 35737754 35738216 -166590131 - L1ME3A LINE L1 -1141 5005 4541 32 0 0 0 chr4 35738333 35738365 -166589982 + AT_rich Low_complexity Low_complexity 1 32 0 747 176 14 14 chr4 35738791 35738933 -166589414 - MLT1A1 LTR MaLR -223 142 1 365 311 68 31 chr4 35738998 35739380 -166588967 + L1MEc LINE L1 548 943 -5453 1004 275 61 50 chr4 35739397 35739937 -166588410 + MLT1E1 LTR MaLR 2 505 -119 25 0 0 0 chr4 35740037 35740062 -166588285 + AT_rich Low_complexity Low_complexity 1 25 0 1953 138 21 86 chr4 35740709 35741129 -166587218 + L1MA7 LINE L1 5705 6097 -194 24 0 0 0 chr4 35743459 35743483 -166584864 + AT_rich Low_complexity Low_complexity 1 24 0 213 39 0 0 chr4 35743624 35743650 -166584697 + (CATG)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr4 35746057 35746081 -166582266 + AT_rich Low_complexity Low_complexity 1 24 0 504 243 101 0 chr4 35746521 35746669 -166581678 - MIR SINE MIR 0 262 100 2646 26 0 0 chr4 35746820 35747123 -166581224 - AluYa5 SINE Alu -8 303 1 488 251 107 32 chr4 35747513 35747700 -166580647 - MER67D LTR ERV1 -8 506 306 1237 202 25 83 chr4 35747746 35748073 -166580274 - MER67D LTR ERV1 -203 311 4 372 268 73 131 chr4 35748117 35748430 -166579917 - L1MEc LINE L1 -6094 302 8 53 49 0 0 chr4 35748466 35748547 -166579800 + AT_rich Low_complexity Low_complexity 1 81 0 23 33 0 0 chr4 35748579 35748609 -166579738 + AT_rich Low_complexity Low_complexity 1 30 0 578 188 0 16 chr4 35748619 35748747 -166579600 - L1MB1 LINE L1 -1 6167 6042 250 255 169 56 chr4 35748747 35748978 -166579369 - Charlie7 DNA MER1_type -1890 722 466 1920 213 55 28 chr4 35749138 35749631 -166578716 + L1MC3 LINE L1 6629 7134 -651 212 175 0 0 chr4 35750438 35750478 -166577869 + T-rich Low_complexity Low_complexity 1 40 0 980 107 0 0 chr4 35750936 35751067 -166577280 - AluSg1 SINE Alu -178 131 1 21 0 0 0 chr4 35751572 35751593 -166576754 + AT_rich Low_complexity Low_complexity 1 21 0 1262 271 99 45 chr4 35752596 35753180 -166575167 - MLT1E2 LTR MaLR -2 624 7 198 0 0 0 chr4 35753259 35753281 -166575066 + (CA)n Simple_repeat Simple_repeat 2 23 0 183 220 0 0 chr4 35753375 35753425 -166574922 + (CA)n Simple_repeat Simple_repeat 2 51 0 2166 136 0 0 chr4 35753687 35753989 -166574358 - AluSx SINE Alu -10 302 1 416 212 159 26 chr4 35754102 35754253 -166574094 + MLT1E3 LTR MaLR 1 171 -483 3973 108 5 49 chr4 35754281 35754912 -166573435 + LTR14B LTR ERVK 6 608 0 1013 306 102 22 chr4 35754965 35755416 -166572931 + MLT1E3 LTR MaLR 136 622 -2 184 151 19 38 chr4 35755743 35755796 -166572551 + GA-rich Low_complexity Low_complexity 3 54 0 202 283 19 0 chr4 35757039 35757092 -166571255 + MIR3 SINE MIR 112 165 -43 25 0 0 0 chr4 35758352 35758377 -166569970 + AT_rich Low_complexity Low_complexity 1 25 0 1603 180 72 67 chr4 35758648 35759037 -166569310 - MER57A LTR ERV1 0 403 13 748 132 0 16 chr4 35759040 35759161 -166569186 - MER57A-int LTR ERV1 -29 7508 7390 265 182 36 0 chr4 35759182 35759237 -166569110 - LTR54B LTR ERV1 -210 288 232 469 176 88 32 chr4 35759290 35759415 -166568932 - LTR54B LTR ERV1 -366 132 1 5541 219 25 14 chr4 35759466 35760685 -166567662 - MER57A-int LTR ERV1 -470 7067 5835 1236 221 51 102 chr4 35761026 35761577 -166566770 - MER57A-int LTR ERV1 -1714 5823 5301 1295 161 0 5 chr4 35761680 35761897 -166566450 - THE1C-int LTR MaLR -1364 216 1 2449 134 5 5 chr4 35761897 35762270 -166566077 - THE1C LTR MaLR 0 375 3 392 235 38 52 chr4 35762317 35762722 -166565625 - MER4-int LTR ERV1 -2561 3385 1757 30 27 0 0 chr4 35762741 35762778 -166565569 + AT_rich Low_complexity Low_complexity 1 37 0 563 161 71 171 chr4 35762893 35763104 -166565243 - MER4-int LTR ERV1 -2878 3453 3264 817 159 13 92 chr4 35763156 35763383 -166564964 - MER4-int LTR ERV1 -3059 3272 3064 264 194 19 94 chr4 35763357 35763515 -166564832 - MER4-int LTR ERV1 -3728 1395 1094 * 283 269 35 14 chr4 35763487 35763628 -166564719 - MER4-int LTR ERV1 -4614 1984 1841 909 224 65 24 chr4 35763638 35763884 -166564463 - MER34C LTR ERV1 -175 410 155 2695 215 31 49 chr4 35764063 35764762 -166563585 - MER4-int LTR ERV1 -6695 842 156 442 269 0 9 chr4 35764762 35764870 -166563477 + MLT1D LTR MaLR 85 191 -314 6301 179 8 7 chr4 35764870 35766727 -166561620 + L1PB1 LINE L1 3922 5782 -369 231 114 0 0 chr4 35766727 35766762 -166561585 + (CA)n Simple_repeat Simple_repeat 2 36 0 6301 179 8 7 chr4 35766762 35767128 -166561219 + L1PB1 LINE L1 5782 6146 -5 684 214 73 62 chr4 35767151 35767440 -166560907 + L1MC5 LINE L1 7026 7317 -644 2152 238 79 26 chr4 35767958 35768619 -166559728 + Charlie1a DNA MER1_type 1 696 -759 1057 158 19 81 chr4 35768619 35768878 -166559469 + L1MA10 LINE L1 6082 6324 -10 1279 174 151 6 chr4 35768887 35769198 -166559149 + Charlie1a DNA MER1_type 701 1056 -399 741 210 135 5 chr4 35769290 35769490 -166558857 + MLT1D LTR MaLR 277 502 -3 210 143 0 0 chr4 35769995 35770030 -166558317 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 192 427 10 0 chr4 35770317 35770413 -166557934 - MIR SINE MIR -70 138 42 3572 193 18 22 chr4 35770548 35771285 -166557062 - MER50 LTR ERV1 0 734 1 25 31 0 0 chr4 35771321 35771353 -166556994 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr4 35771460 35771483 -166556864 + AT_rich Low_complexity Low_complexity 1 23 0 234 100 25 25 chr4 35771678 35771718 -166556629 - MER4A LTR ERV1 -566 98 59 14621 129 100 50 chr4 35771758 35775715 -166552632 - MER4A-int LTR ERV1 -2 6596 1006 5132 148 88 19 chr4 35775729 35776682 -166551665 - MER4A-int LTR ERV1 -5421 1177 199 2795 83 193 25 chr4 35776698 35776846 -166551501 - MER4A-int LTR ERV1 -6035 563 441 230 0 33 0 chr4 35776846 35776876 -166551471 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2795 83 193 25 chr4 35776876 35777209 -166551138 - MER4A-int LTR ERV1 -6157 441 1 1409 167 37 58 chr4 35777212 35777565 -166550782 - MER4A LTR ERV1 0 664 261 283 153 361 0 chr4 35777565 35777637 -166550710 - MER4A LTR ERV1 -566 98 1 369 291 146 0 chr4 35777976 35778196 -166550151 - L1MC4a LINE L1 -1882 5926 5675 181 182 38 31 chr4 35778213 35778372 -166549975 + (TA)n Simple_repeat Simple_repeat 2 161 0 539 338 41 20 chr4 35778989 35779282 -166549065 - LTR16C LTR ERVL 0 491 193 1469 224 17 14 chr4 35779548 35779896 -166548451 - MER4D LTR ERV1 0 903 555 388 221 23 0 chr4 35779952 35780038 -166548309 - MER49 LTR ERV1 -638 285 198 1653 134 9 94 chr4 35780047 35780389 -166547958 - AluSq SINE Alu 0 313 1 766 297 22 4 chr4 35780587 35780816 -166547531 + MER90 LTR ERV1 382 614 0 432 55 0 0 chr4 35781002 35781057 -166547290 + (TG)n Simple_repeat Simple_repeat 2 56 0 281 47 23 0 chr4 35781057 35781100 -166547247 + (TA)n Simple_repeat Simple_repeat 2 45 0 2275 304 125 35 chr4 35781150 35782616 -166545731 + L2 LINE L2 781 2378 -936 1119 112 0 0 chr4 35782678 35782830 -166545517 + AluSg/x SINE Alu 144 295 -17 280 229 9 9 chr4 35783442 35783547 -166544800 + (TA)n Simple_repeat Simple_repeat 1 105 0 240 200 0 0 chr4 35784027 35784082 -166544265 + GA-rich Low_complexity Low_complexity 2 56 0 300 91 0 0 chr4 35784116 35784160 -166544187 + (GGGA)n Simple_repeat Simple_repeat 3 46 0 1743 189 23 12 chr4 35784617 35784960 -166543387 - MER7A DNA MER2_type 0 346 2 23 78 0 0 chr4 35784960 35785011 -166543336 + AT_rich Low_complexity Low_complexity 1 51 0 22 56 0 0 chr4 35785094 35785130 -166543217 + AT_rich Low_complexity Low_complexity 1 36 0 31 116 0 0 chr4 35785160 35785324 -166543023 + AT_rich Low_complexity Low_complexity 1 164 0 5502 145 22 1 chr4 35785687 35786629 -166541718 - L1MA3 LINE L1 -27 7697 6736 324 0 0 0 chr4 35786641 35786677 -166541670 + (T)n Simple_repeat Simple_repeat 1 36 0 6970 173 21 14 chr4 35787067 35788458 -166539889 - L1MA3 LINE L1 -827 6738 5339 12475 203 56 4 chr4 35788460 35792216 -166536131 - L1MA3 LINE L1 -3270 4295 13 25 0 0 0 chr4 35792365 35792390 -166535957 + AT_rich Low_complexity Low_complexity 1 25 0 281 193 12 48 chr4 35792562 35792645 -166535702 + (TATATG)n Simple_repeat Simple_repeat 3 82 0 27 49 0 0 chr4 35792717 35792758 -166535589 + AT_rich Low_complexity Low_complexity 1 41 0 4527 196 33 37 chr4 35792782 35793257 -166535090 - L1MA9 LINE L1 -32 6168 5693 383 38 19 0 chr4 35793257 35793310 -166535037 + (CA)n Simple_repeat Simple_repeat 2 55 0 4527 196 33 37 chr4 35793310 35794594 -166533753 - L1MA9 LINE L1 -507 5693 4406 1529 263 55 28 chr4 35794639 35795073 -166533274 - L1MA9 LINE L1 -5506 449 4 25 31 0 0 chr4 35795160 35795192 -166533155 + AT_rich Low_complexity Low_complexity 1 32 0 341 161 0 0 chr4 35795446 35795502 -166532845 + AluJb SINE Alu 86 141 -161 276 77 0 0 chr4 35795608 35795647 -166532700 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr4 35795649 35795670 -166532677 + AT_rich Low_complexity Low_complexity 1 21 0 351 78 0 0 chr4 35795823 35795874 -166532473 + (TA)n Simple_repeat Simple_repeat 1 51 0 22 0 0 0 chr4 35798585 35798607 -166529740 + AT_rich Low_complexity Low_complexity 1 22 0 208 234 21 0 chr4 35798629 35798676 -166529671 + GA-rich Low_complexity Low_complexity 2 49 0 216 0 0 0 chr4 35798859 35798883 -166529464 + (TA)n Simple_repeat Simple_repeat 2 25 0 2573 46 0 3 chr4 35798883 35799190 -166529157 - AluY SINE Alu -5 306 1 27 0 0 0 chr4 35799190 35799217 -166529130 + AT_rich Low_complexity Low_complexity 1 27 0 339 331 61 22 chr4 35801329 35801510 -166526837 + MIR SINE MIR 75 262 0 2300 172 31 40 chr4 35801540 35802017 -166526330 - L1MA9 LINE L1 -45 6331 5859 2569 201 35 7 chr4 35802027 35802618 -166525729 - L1MA9 LINE L1 -1254 4956 4349 781 192 33 0 chr4 35802619 35802770 -166525577 + L1PB4 LINE L1 4089 4244 -1902 2196 164 9 35 chr4 35802770 35803202 -166525145 + L1PB4 LINE L1 5734 6156 0 1008 259 20 19 chr4 35803204 35804008 -166524339 - L1MA9 LINE L1 -4279 1932 961 401 378 47 29 chr4 35804865 35805249 -166523098 - L1MA9 LINE L1 -5750 391 1 261 304 22 11 chr4 35805498 35805590 -166522757 - MIR SINE MIR -133 129 37 313 364 64 55 chr4 35806036 35806379 -166521968 - L2 LINE L2 -1 3271 2926 1056 233 65 106 chr4 35807078 35807605 -166520742 - MLT1D LTR MaLR 0 505 1 28 48 0 0 chr4 35807783 35807825 -166520522 + AT_rich Low_complexity Low_complexity 1 42 0 180 254 0 0 chr4 35808115 35808174 -166520173 + GA-rich Low_complexity Low_complexity 3 61 0 845 142 0 8 chr4 35808923 35809057 -166519290 + AluSq/x SINE Alu 1 133 -179 2278 95 3 0 chr4 35809065 35809370 -166518977 + AluSq SINE Alu 1 306 -7 2112 129 39 36 chr4 35809893 35810256 -166518091 - THE1B LTR MaLR 0 364 1 25 0 0 0 chr4 35812485 35812510 -166515837 + AT_rich Low_complexity Low_complexity 1 25 0 13195 155 20 0 chr4 35813303 35816428 -166511919 - L1PA11 LINE L1 0 6174 2996 410 249 99 17 chr4 35816735 35816916 -166511431 + MIR SINE MIR 53 248 -14 28 29 0 0 chr4 35817221 35817256 -166511091 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr4 35817312 35817349 -166510998 + AT_rich Low_complexity Low_complexity 1 37 0 438 309 108 43 chr4 35817457 35817928 -166510419 - L2 LINE L2 -19 3294 2782 320 279 87 58 chr4 35818002 35818210 -166510137 + MIR SINE MIR 49 262 0 233 354 112 19 chr4 35818208 35818414 -166509933 - L2 LINE L2 -604 2710 2486 * 25 65 0 0 chr4 35818508 35818554 -166509793 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr4 35818831 35818854 -166509493 + AT_rich Low_complexity Low_complexity 1 23 0 33 85 0 0 chr4 35819117 35819199 -166509148 + AT_rich Low_complexity Low_complexity 1 82 0 33 43 0 0 chr4 35819258 35819305 -166509042 + AT_rich Low_complexity Low_complexity 1 47 0 1913 181 2 61 chr4 35819902 35820312 -166508035 + MLT1B LTR MaLR 1 386 -4 202 300 29 0 chr4 35871121 35871191 -166457156 + MIR3 SINE MIR 87 158 -50 275 250 167 0 chr4 35871534 35871618 -166456729 - MIR SINE MIR -8 254 157 2162 76 7 7 chr4 35871642 35871919 -166456428 - AluY SINE Alu -33 278 2 1771 292 31 43 chr4 35872195 35873151 -166455196 + L1MEc LINE L1 210 1154 -5242 739 219 32 102 chr4 35873176 35873731 -166454616 + L1ME LINE L1 5080 5597 -569 21 36 0 0 chr4 35873817 35873845 -166454502 + AT_rich Low_complexity Low_complexity 1 28 0 235 295 76 46 chr4 35874184 35874486 -166453861 - L1MEd LINE L1 -4869 1250 940 22 0 0 0 chr4 35874569 35874591 -166453756 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 35875260 35875281 -166453066 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 35875370 35875399 -166452948 + AT_rich Low_complexity Low_complexity 1 29 0 601 249 22 131 chr4 35875399 35875805 -166452542 + MER57A LTR ERV1 42 403 0 23 0 0 0 chr4 35876399 35876422 -166451925 + AT_rich Low_complexity Low_complexity 1 23 0 317 154 15 0 chr4 35876489 35876554 -166451793 - L1MA3 LINE L1 0 6305 6240 25 0 0 0 chr4 35876623 35876648 -166451699 + AT_rich Low_complexity Low_complexity 1 25 0 41 21 0 0 chr4 35876890 35876938 -166451409 + AT_rich Low_complexity Low_complexity 1 48 0 1136 275 91 14 chr4 35876958 35877376 -166450971 - LTR16A LTR ERVL 0 450 1 2270 62 16 20 chr4 35878174 35878480 -166449867 - AluY SINE Alu -6 305 1 30 59 0 0 chr4 35878865 35878916 -166449431 + AT_rich Low_complexity Low_complexity 1 51 0 215 267 13 0 chr4 35879633 35879708 -166448639 + GA-rich Low_complexity Low_complexity 2 77 0 184 324 0 29 chr4 35879824 35879892 -166448455 - MIR3 SINE MIR -7 201 136 206 211 0 35 chr4 35880803 35880860 -166447487 + (TTAA)n Simple_repeat Simple_repeat 1 55 0 237 108 0 0 chr4 35881152 35881189 -166447158 + (GAAA)n Simple_repeat Simple_repeat 4 40 0 293 234 31 0 chr4 35881781 35881845 -166446502 + MLT1E2 LTR MaLR 1 66 -439 337 260 0 0 chr4 35881858 35881935 -166446412 + MER2 DNA MER2_type 22 98 -247 243 178 0 151 chr4 35881964 35882037 -166446310 + MER2 DNA MER2_type 284 345 0 693 252 34 74 chr4 35882037 35882311 -166446036 + MLT1E2 LTR MaLR 107 371 -134 2738 195 12 56 chr4 35882311 35882951 -166445396 + LTR9 LTR ERV1 1 612 0 9824 176 23 13 chr4 35882951 35883577 -166444770 + HUERS-P3 LTR ERV1 1 619 -8300 189 0 0 0 chr4 35883577 35883598 -166444749 + (TC)n Simple_repeat Simple_repeat 2 22 0 9824 176 23 13 chr4 35883598 35885265 -166443082 + HUERS-P3 LTR ERV1 619 2401 -6518 3673 100 5 51 chr4 35885342 35885913 -166442434 + HUERS-P3 LTR ERV1 2098 2642 -4776 2323 180 27 23 chr4 35885913 35886352 -166441995 - LTR8 LTR ERV1 -250 441 1 20570 145 48 33 chr4 35886352 35886676 -166441671 + HUERS-P3 LTR ERV1 3073 3391 -4027 1838 164 3 7 chr4 35886676 35886969 -166441378 - AluSx SINE Alu -17 295 4 20570 145 48 33 chr4 35886969 35890454 -166437893 + HUERS-P3 LTR ERV1 3391 6939 -479 865 129 35 24 chr4 35890468 35890638 -166437709 + HUERS-P3 LTR ERV1 2388 2559 -2456 951 124 4 182 chr4 35890795 35891037 -166437310 + HUERS-P3 LTR ERV1 8720 8918 -1 2437 199 32 63 chr4 35891037 35891669 -166436678 + LTR9 LTR ERV1 1 612 0 523 285 7 0 chr4 35891669 35891806 -166436541 + MLT1E2 LTR MaLR 368 505 0 1948 210 141 24 chr4 35892008 35892222 -166436125 + MER101B LTR ERV1 1 188 -382 1980 188 22 3 chr4 35892222 35892579 -166435768 + THE1B LTR MaLR 1 364 0 1948 210 141 24 chr4 35892579 35892601 -166435746 + MER101B LTR ERV1 188 206 -364 2312 142 6 0 chr4 35892601 35892954 -166435393 + THE1A LTR MaLR 1 355 0 1948 210 141 24 chr4 35892954 35893226 -166435121 + MER101B LTR ERV1 206 570 0 188 343 202 0 chr4 35894073 35894172 -166434175 - L2 LINE L2 0 3313 3195 26 30 0 0 chr4 35894294 35894327 -166434020 + AT_rich Low_complexity Low_complexity 1 33 0 2374 208 38 2 chr4 35894412 35894863 -166433484 + L1PA13 LINE L1 6 472 -7109 1320 184 95 48 chr4 35894863 35895221 -166433126 - THE1C LTR MaLR 0 375 1 8359 196 32 7 chr4 35895228 35896826 -166431521 - MSTA-int LTR MaLR -8 1643 5 1896 166 91 13 chr4 35896830 35897227 -166431120 - MSTA LTR MaLR 0 428 1 6206 223 42 77 chr4 35897228 35901385 -166426962 + L1PA13 LINE L1 471 4441 -3143 363 182 0 0 chr4 35901385 35901451 -166426896 + L1PA13 LINE L1 4950 5015 -2569 4707 120 29 17 chr4 35901463 35902523 -166425824 + L1PA13 LINE L1 6352 7415 -186 21 0 0 0 chr4 35902972 35902993 -166425354 + AT_rich Low_complexity Low_complexity 1 21 0 4400 168 36 5 chr4 35903036 35903904 -166424443 - MER4D LTR ERV1 -4 866 1 2230 112 0 0 chr4 35904303 35904606 -166423741 - AluY SINE Alu -8 303 1 1606 134 9 0 chr4 35905134 35905366 -166422981 + AluSx SINE Alu 63 296 -16 24 0 0 0 chr4 35905547 35905571 -166422776 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 35905840 35905864 -166422483 + AT_rich Low_complexity Low_complexity 1 24 0 21 82 0 0 chr4 35906303 35906352 -166421995 + AT_rich Low_complexity Low_complexity 1 49 0 1458 271 40 36 chr4 35908610 35909215 -166419132 - MER92B LTR ERV1 0 636 30 7607 23 1 4 chr4 35909348 35910406 -166417941 + L1PA3 LINE L1 5100 6155 0 309 281 67 0 chr4 35910453 35910588 -166417759 - MER31-int LTR ERV1 -434 4502 4359 367 208 92 42 chr4 35910676 35910796 -166417551 - LTR37A LTR ERV1 -297 129 4 1764 258 64 85 chr4 35910797 35912528 -166415819 - MER31-int LTR ERV1 -679 4257 2477 255 268 62 39 chr4 35912584 35912763 -166415584 - MER31-int LTR ERV1 -2567 2369 2187 1517 176 103 123 chr4 35912846 35913449 -166414898 - LTR38B LTR ERV1 -18 592 2 1633 244 45 33 chr4 35913509 35914310 -166414037 - MER31-int LTR ERV1 -3650 1286 427 1598 234 91 47 chr4 35914881 35915262 -166413085 - MER92B LTR ERV1 -52 584 169 408 40 0 0 chr4 35915262 35915312 -166413035 + (TG)n Simple_repeat Simple_repeat 2 51 0 1598 234 91 47 chr4 35915312 35915489 -166412858 - MER92B LTR ERV1 -467 169 1 197 184 82 20 chr4 35919166 35919215 -166409132 + L2 LINE L2 3261 3312 -1 22 35 0 0 chr4 35919304 35919333 -166409014 + AT_rich Low_complexity Low_complexity 1 29 0 210 143 0 0 chr4 35919461 35919496 -166408851 + (CA)n Simple_repeat Simple_repeat 2 36 0 187 149 21 21 chr4 35920130 35920177 -166408170 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 302 182 15 0 chr4 35920264 35920330 -166408017 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 367 341 116 31 chr4 35920387 35920645 -166407702 - L3 LINE CR1 -94 1483 1204 1247 94 6 9 chr4 35920924 35921106 -166407241 - L1PA7 LINE L1 -869 5277 5108 6550 75 7 0 chr4 35921106 35921984 -166406363 + L1PA7 LINE L1 5271 6154 0 1247 94 6 9 chr4 35921984 35922007 -166406340 - L1P LINE L1 -1038 5108 5086 1792 251 77 20 chr4 35922041 35922534 -166405813 - MLT1E LTR MaLR -68 525 5 957 272 103 12 chr4 35922845 35923271 -166405076 - MLT1C LTR MaLR -2 465 1 341 361 13 13 chr4 35923874 35924032 -166404315 - MIR SINE MIR -93 169 12 2202 100 33 0 chr4 35924263 35924563 -166403784 - AluY SINE Alu 0 311 2 1427 235 7 0 chr4 35924709 35924986 -166403361 - MER44D DNA MER2_type -3 602 452 639 233 8 0 chr4 35924982 35925102 -166403245 - MER44D DNA MER2_type -584 121 1 * 1587 179 62 22 chr4 35925118 35925475 -166402872 + THE1C LTR MaLR 1 371 -4 9026 153 6 46 chr4 35925482 35927125 -166401222 + THE1C-int LTR MaLR 4 1580 0 1520 140 89 78 chr4 35927125 35927423 -166400924 + THE1C LTR MaLR 1 305 -70 2267 115 0 3 chr4 35927423 35927737 -166400610 - AluSq SINE Alu 0 313 1 1520 140 89 78 chr4 35927737 35927809 -166400538 + THE1C LTR MaLR 305 375 0 21 0 0 0 chr4 35928108 35928129 -166400218 + AT_rich Low_complexity Low_complexity 1 21 0 40 59 0 0 chr4 35928468 35928536 -166399811 + AT_rich Low_complexity Low_complexity 1 68 0 880 238 84 0 chr4 35928684 35929004 -166399343 - Charlie1 DNA MER1_type -41 2720 2374 369 0 0 0 chr4 35929411 35929452 -166398895 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1199 350 31 28 chr4 35929514 35929979 -166398368 - ERVL LTR ERVL -989 4775 4306 1641 193 58 25 chr4 35929979 35930342 -166398005 + THE1C LTR MaLR 1 375 0 1199 350 31 28 chr4 35930342 35930585 -166397762 - ERVL LTR ERVL -1458 4306 4065 578 349 108 32 chr4 35930947 35931201 -166397146 - ERVL LTR ERVL -2046 3439 3206 210 37 0 0 chr4 35931201 35931228 -166397119 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 578 349 108 32 chr4 35931228 35931649 -166396698 - ERVL LTR ERVL -2279 3206 2810 691 247 11 45 chr4 35933279 35933457 -166394890 + MER45A DNA AcHobo 3 174 -4 263 325 26 0 chr4 35933656 35933770 -166394577 - LTR33 LTR ERVL -38 483 367 28 0 0 0 chr4 35934750 35934778 -166393569 + AT_rich Low_complexity Low_complexity 1 28 0 22 88 0 0 chr4 35935923 35935980 -166392367 + AT_rich Low_complexity Low_complexity 1 57 0 24 0 0 0 chr4 35937783 35937807 -166390540 + AT_rich Low_complexity Low_complexity 1 24 0 1090 289 43 26 chr4 35938978 35939438 -166388909 - MLT1L LTR MaLR -147 468 1 1047 209 29 0 chr4 35940419 35940625 -166387722 - MER20 DNA MER1_type -4 215 4 196 429 75 33 chr4 35940871 35941111 -166387236 - L2 LINE L2 -8 3264 3015 2034 168 71 30 chr4 35941371 35941805 -166386542 + LTR47A LTR ERVL 1 452 0 190 380 88 6 chr4 35942462 35942633 -166385714 - L2 LINE L2 -1342 1972 1788 1436 207 54 76 chr4 35942633 35943149 -166385198 + MLT1D LTR MaLR 1 505 0 934 324 133 24 chr4 35943198 35943968 -166384379 - L2 LINE L2 0 3313 2449 1987 127 0 0 chr4 35944023 35944320 -166384027 + AluSg SINE Alu 5 301 0 271 331 74 16 chr4 35944736 35944857 -166383490 - L3b LINE CR1 -20 1563 1436 180 111 0 0 chr4 35945782 35945809 -166382538 + (TG)n Simple_repeat Simple_repeat 2 28 0 201 311 0 11 chr4 35946905 35946995 -166381352 + (TA)n Simple_repeat Simple_repeat 2 90 0 217 234 234 13 chr4 35947029 35947106 -166381241 - MIR SINE MIR -142 120 27 201 232 0 71 chr4 35947369 35947425 -166380922 - L2 LINE L2 0 3313 3262 26 74 0 0 chr4 35947780 35947834 -166380513 + AT_rich Low_complexity Low_complexity 1 54 0 668 325 50 9 chr4 35948229 35948648 -166379699 - L1M4 LINE L1 -3372 2774 2339 672 247 101 46 chr4 35949128 35949347 -166379000 + MLT1E1 LTR MaLR 424 654 0 987 195 39 78 chr4 35949350 35949657 -166378690 - LTR37A LTR ERV1 -86 340 46 880 132 8 0 chr4 35950717 35950846 -166377501 + AluSq SINE Alu 4 133 -180 22 0 0 0 chr4 35950846 35950868 -166377479 + AT_rich Low_complexity Low_complexity 1 22 0 1025 162 0 0 chr4 35951251 35951418 -166376929 + AluSq SINE Alu 137 303 -10 1445 241 94 54 chr4 35951673 35951794 -166376553 - MLT1E2 LTR MaLR -17 598 483 2190 72 0 0 chr4 35951794 35952114 -166376233 - AluY SINE Alu 0 325 6 1445 241 94 54 chr4 35952114 35952473 -166375874 - MLT1E2 LTR MaLR -132 483 111 29 78 0 0 chr4 35952940 35953004 -166375343 + AT_rich Low_complexity Low_complexity 1 64 0 484 167 0 0 chr4 35953600 35953678 -166374669 - Tigger1 DNA MER2_type -621 1797 1720 180 0 0 0 chr4 35953697 35953717 -166374630 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 18862 115 6 3 chr4 35953717 35958132 -166370215 - L1PA8 LINE L1 -23 6149 1728 1532 64 18 5 chr4 35958476 35958694 -166369653 - L1P LINE L1 -917 5229 5009 3401 74 7 0 chr4 35958694 35959143 -166369204 + L1PA7 LINE L1 5693 6153 -1 2125 169 7 7 chr4 35959765 35960168 -166368179 + MER57A LTR ERV1 1 403 0 21 36 0 0 chr4 35960429 35960457 -166367890 + AT_rich Low_complexity Low_complexity 1 28 0 855 222 0 18 chr4 35960852 35961023 -166367324 - Tigger2 DNA MER2_type -1 2717 2550 * 4731 179 17 4 chr4 35961013 35961858 -166366489 - Tigger2 DNA MER2_type -1862 856 1 203 156 0 0 chr4 35962416 35962448 -166365899 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 272 237 0 0 chr4 35962842 35962901 -166365446 + MLT1H LTR MaLR 80 138 -411 468 283 61 35 chr4 35963075 35963273 -166365074 + MLT1H LTR MaLR 347 549 0 22 0 0 0 chr4 35963574 35963596 -166364751 + AT_rich Low_complexity Low_complexity 1 22 0 210 136 0 0 chr4 35963795 35963839 -166364508 + (TA)n Simple_repeat Simple_repeat 2 45 0 1599 206 0 3 chr4 35963902 35964198 -166364149 - AluJb SINE Alu -17 295 1 2016 183 3 6 chr4 35964362 35964728 -166363619 - MLT1A1 LTR MaLR 0 365 1 2404 52 0 0 chr4 35965155 35965446 -166362901 - AluY SINE Alu -18 293 3 464 240 110 13 chr4 35965487 35965641 -166362706 - MER5B DNA MER1_type -9 169 1 228 259 0 0 chr4 35966425 35966483 -166361864 - L1MA9 LINE L1 -4 6308 6251 2162 265 46 51 chr4 35966572 35968044 -166360303 - L1ME1 LINE L1 -166 6069 4621 848 298 61 52 chr4 35968044 35968795 -166359552 - L1ME1 LINE L1 -3344 2871 2156 23 33 0 0 chr4 35969090 35969120 -166359227 + AT_rich Low_complexity Low_complexity 1 30 0 1293 310 24 15 chr4 35969422 35969887 -166358460 - LTR40a LTR ERVL -22 497 29 26 0 0 0 chr4 35970009 35970035 -166358312 + AT_rich Low_complexity Low_complexity 1 26 0 190 308 13 13 chr4 35970040 35970118 -166358229 - MIR SINE MIR -98 164 87 279 0 0 0 chr4 35970308 35970339 -166358008 + (TG)n Simple_repeat Simple_repeat 1 31 0 30 59 0 0 chr4 35970352 35970403 -166357944 + AT_rich Low_complexity Low_complexity 1 51 0 536 205 9 25 chr4 35970483 35970617 -166357730 - LTR40b LTR ERVL -2 463 323 234 0 0 0 chr4 35970641 35970667 -166357680 + (GA)n Simple_repeat Simple_repeat 2 27 0 198 220 22 22 chr4 35971610 35971701 -166356646 + (CATATA)n Simple_repeat Simple_repeat 3 93 0 501 181 64 0 chr4 35971716 35971810 -166356537 + MER4D LTR ERV1 1 100 -803 * 2471 205 117 9 chr4 35971798 35972369 -166355978 + MER4D LTR ERV1 271 903 0 2220 202 50 89 chr4 35972550 35973272 -166355075 - LTR8A LTR ERV1 0 727 34 185 62 0 31 chr4 35973365 35973397 -166354950 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 225 0 0 0 chr4 35974648 35974673 -166353674 + (CA)n Simple_repeat Simple_repeat 2 26 0 3356 166 64 19 chr4 35974728 35975062 -166353285 - L1PB3 LINE L1 -7 6147 5829 288 0 0 0 chr4 35975062 35975094 -166353253 + (TG)n Simple_repeat Simple_repeat 2 33 0 3356 166 64 19 chr4 35975094 35975434 -166352913 - L1PB3 LINE L1 -325 5829 5443 1286 276 46 78 chr4 35975702 35976333 -166352014 - MLT1E3 LTR MaLR -13 611 1 190 376 82 24 chr4 35978339 35978509 -166349838 + L2 LINE L2 2870 3049 -223 1068 309 36 20 chr4 35978817 35979209 -166349138 + LTR40a LTR ERVL 36 433 -86 * 1626 199 38 80 chr4 35979204 35979631 -166348716 + MSTB LTR MaLR 18 426 0 274 189 0 0 chr4 35979639 35979692 -166348655 + LTR40a LTR ERVL 448 500 -19 234 241 0 0 chr4 35979725 35979779 -166348568 - MIR SINE MIR -106 156 103 22 0 0 0 chr4 35980082 35980104 -166348243 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 35980438 35980469 -166347878 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr4 35980967 35980998 -166347349 + AT_rich Low_complexity Low_complexity 1 31 0 881 243 71 30 chr4 35981338 35981605 -166346742 - MER93a LTR ERV1 -4 398 121 382 363 126 0 chr4 35981805 35982028 -166346319 - MIR SINE MIR -9 253 3 613 93 0 0 chr4 35982595 35982681 -166345666 + MLT2A2 LTR ERVL 1 86 -367 2927 108 12 0 chr4 35982757 35983165 -166345182 + MLT2A2 LTR ERVL 1 413 -40 303 191 0 0 chr4 35983168 35983231 -166345116 + (TATATG)n Simple_repeat Simple_repeat 6 68 0 238 105 18 18 chr4 35983266 35983323 -166345024 + (TA)n Simple_repeat Simple_repeat 2 58 0 277 118 0 20 chr4 35983326 35983377 -166344970 + MLT2A2 LTR ERVL 395 444 0 1980 143 45 34 chr4 35983620 35983978 -166344369 - THE1B LTR MaLR -2 362 1 201 176 0 44 chr4 35984151 35984219 -166344128 + GA-rich Low_complexity Low_complexity 4 68 0 238 308 19 0 chr4 35984512 35984619 -166343728 + (CATA)n Simple_repeat Simple_repeat 4 112 0 5038 96 16 9 chr4 35985503 35986669 -166341678 + L1P3 LINE L1 4572 5741 -413 261 299 117 15 chr4 35988410 35988547 -166339800 + MIR SINE MIR 102 252 -10 22 0 0 0 chr4 35989675 35989697 -166338650 + AT_rich Low_complexity Low_complexity 1 22 0 268 337 121 25 chr4 35989735 35989934 -166338413 + MIR SINE MIR 45 262 0 289 362 26 0 chr4 35990243 35990359 -166337988 - L2 LINE L2 -18 3295 3177 270 231 112 33 chr4 35990802 35990892 -166337455 + MLT1I LTR MaLR 308 450 0 542 354 41 73 chr4 35990978 35991008 -166337339 - L2 LINE L2 -245 3068 3039 3142 118 14 27 chr4 35991008 35991526 -166336821 + MER9 LTR ERVK 1 511 0 542 354 41 73 chr4 35991526 35991612 -166336735 - L2 LINE L2 -274 3039 2952 2735 29 0 0 chr4 35991612 35991926 -166336421 + AluYb8 SINE Alu 1 314 -4 542 354 41 73 chr4 35991926 35992314 -166336033 - L2 LINE L2 -361 2952 2577 3132 178 22 7 chr4 35993170 35993345 -166335002 - L1MB1 LINE L1 0 6168 5994 5788 236 111 19 chr4 35993345 35994839 -166333508 - L1ME1 LINE L1 -174 6228 4872 1633 183 15 51 chr4 35994839 35995038 -166333309 + THE1C LTR MaLR 1 181 -194 228 35 0 0 chr4 35995038 35995067 -166333280 + (TC)n Simple_repeat Simple_repeat 1 29 0 1633 183 15 51 chr4 35995067 35995256 -166333091 + THE1C LTR MaLR 181 375 0 5788 236 111 19 chr4 35995256 35995760 -166332587 - L1ME1 LINE L1 -1530 4872 4416 1313 181 96 34 chr4 35995760 35996113 -166332234 - THE1C LTR MaLR 0 375 1 5788 236 111 19 chr4 35996113 35996414 -166331933 - L1ME1 LINE L1 -1986 4416 3707 1628 128 0 12 chr4 35996418 35996668 -166331679 + THE1C LTR MaLR 129 375 0 2099 258 78 47 chr4 35996678 35998625 -166329722 - L1ME1 LINE L1 -3552 2830 890 1923 133 19 13 chr4 35998625 35998933 -166329414 + AluSg SINE Alu 1 310 0 2099 258 78 47 chr4 35998933 35999032 -166329315 - L1ME1 LINE L1 -5492 890 796 468 402 21 12 chr4 35999245 35999663 -166328684 - L1M3c LINE L1 -5719 422 1 21 0 0 0 chr4 35999833 35999854 -166328493 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr4 36000416 36000451 -166327896 + AT_rich Low_complexity Low_complexity 1 35 0 270 260 52 0 chr4 36000693 36000770 -166327577 + MIR SINE MIR 163 243 -19 1985 138 41 39 chr4 36000804 36001167 -166327180 - THE1B LTR MaLR 0 364 1 9803 130 49 0 chr4 36001172 36002672 -166325675 - THE1B-int LTR MaLR -6 1574 1 1991 152 11 37 chr4 36002672 36003046 -166325301 - THE1B LTR MaLR 0 364 1 13447 170 24 3 chr4 36003445 36005807 -166322540 - Tigger1 DNA MER2_type 0 2418 8 1858 165 10 0 chr4 36005808 36006118 -166322229 + AluSx SINE Alu 1 347 0 210 59 59 0 chr4 36006118 36006152 -166322195 + A-rich Low_complexity Low_complexity 2 180 0 194 355 136 26 chr4 36006278 36006433 -166321914 - MIR3 SINE MIR -3 205 34 202 211 123 0 chr4 36006646 36006703 -166321644 + L2 LINE L2 3248 3311 -2 1949 142 3 22 chr4 36006861 36007177 -166321170 - AluSx SINE Alu 0 312 3 216 266 16 16 chr4 36007344 36007408 -166320939 + MIR3 SINE MIR 138 201 -7 4637 157 25 5 chr4 36008894 36009876 -166318471 - L1M2 LINE L1 -743 5403 4468 364 203 25 0 chr4 36009872 36009951 -166318396 + L1MA8 LINE L1 5508 5588 -712 * 1953 154 3 3 chr4 36009953 36010428 -166317919 + AluSx SINE Alu 1 475 0 1386 178 30 16 chr4 36010468 36010771 -166317576 + L1MA5 LINE L1 5994 6300 0 3216 161 8 75 chr4 36010783 36011042 -166317305 + L1MA8 LINE L1 5602 5877 -414 2229 112 0 0 chr4 36011042 36011337 -166317010 + AluSx SINE Alu 1 295 -17 3216 161 8 75 chr4 36011337 36011793 -166316554 + L1MA8 LINE L1 5877 6269 -22 1270 214 37 41 chr4 36013010 36013304 -166315043 - AluJo SINE Alu -19 293 1 249 33 0 0 chr4 36014982 36015012 -166313335 + (GAAAA)n Simple_repeat Simple_repeat 1 30 0 3842 129 51 2 chr4 36016429 36017034 -166311313 + MER41B LTR ERV1 1 635 0 21 0 0 0 chr4 36017319 36017340 -166311007 + AT_rich Low_complexity Low_complexity 1 21 0 367 329 81 39 chr4 36018458 36018817 -166309530 + L1ME3A LINE L1 810 1183 -5213 345 273 141 25 chr4 36018882 36019450 -166308897 + L1ME3A LINE L1 4172 4805 -1410 700 244 24 28 chr4 36019478 36019691 -166308656 - MER20 DNA MER1_type -4 215 4 302 316 42 14 chr4 36019693 36019905 -166308442 + L1ME3A LINE L1 5722 5939 -300 653 187 0 50 chr4 36020317 36020456 -166307891 + FLAM_C SINE Alu 1 132 -11 365 290 126 38 chr4 36020511 36020749 -166307598 - MIR SINE MIR -1 261 3 364 348 51 0 chr4 36020968 36021106 -166307241 - MIR SINE MIR -72 190 46 392 148 58 0 chr4 36021287 36021545 -166306802 + (TA)n Simple_repeat Simple_repeat 1 273 0 220 68 23 23 chr4 36021576 36021620 -166306727 + (TA)n Simple_repeat Simple_repeat 2 45 0 360 116 87 14 chr4 36021625 36021694 -166306653 - MLT2A2 LTR ERVL -47 406 333 2266 141 29 16 chr4 36021725 36022095 -166306252 - MLT2A2 LTR ERVL -81 372 5 40019 93 8 2 chr4 36022097 36027429 -166300918 - HERVL-A2-A2 LTR ERVL -172 5482 119 2336 71 0 0 chr4 36027434 36027751 -166300596 + AluY SINE Alu 1 317 0 933 145 101 0 chr4 36027761 36027920 -166300427 + AluSg SINE Alu 6 180 -130 2860 105 13 3 chr4 36027927 36028316 -166300031 - MLT2A2 LTR ERVL -60 393 1 2977 141 2 52 chr4 36028434 36028987 -166299360 + L1MA4A LINE L1 5391 5915 -388 2906 146 66 18 chr4 36028992 36029569 -166298778 + LTR38B LTR ERV1 8 611 0 961 39 0 23 chr4 36029576 36029706 -166298641 - L1PA5 LINE L1 0 6154 6028 619 213 46 14 chr4 36029706 36029990 -166298357 + L1MA4A LINE L1 5927 6280 -23 29 47 0 0 chr4 36029997 36030040 -166298307 + AT_rich Low_complexity Low_complexity 1 43 0 2815 85 3 0 chr4 36031454 36031830 -166296517 + MER51B LTR ERV1 1 377 0 4904 75 46 3 chr4 36032077 36032769 -166295578 + LTR30 LTR ERV1 1 722 0 513 228 55 0 chr4 36032772 36032899 -166295448 - MER70A LTR ERVL 0 472 339 5799 52 8 0 chr4 36032931 36033641 -166294706 + HERV17 LTR ERV1 5304 6019 -2607 283 77 0 0 chr4 36033634 36033673 -166294674 + HERV17 LTR ERV1 7510 7548 -1078 * 2334 65 3 0 chr4 36033663 36033953 -166294394 + HERV17 LTR ERV1 8335 8625 -1 6033 76 1 14 chr4 36033954 36034744 -166293603 + LTR17 LTR ERV1 1 780 0 1211 239 13 0 chr4 36034744 36034983 -166293364 - MER70A LTR ERVL -130 342 101 454 237 15 69 chr4 36035004 36035135 -166293212 - MER70B LTR ERVL -443 135 12 25 0 0 0 chr4 36035419 36035444 -166292903 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr4 36035549 36035575 -166292772 + AT_rich Low_complexity Low_complexity 1 26 0 6576 88 0 0 chr4 36035575 36036628 -166291719 - L1PA7 LINE L1 -3 6151 5101 2906 108 2 0 chr4 36036629 36037057 -166291290 + L1PA7 LINE L1 4678 5106 -1040 771 234 115 23 chr4 36038316 36038620 -166289727 - LTR16B LTR ERVL -13 451 120 2387 126 58 23 chr4 36038843 36039278 -166289069 - LTR7 LTR ERV1 0 450 1 400 282 47 54 chr4 36039802 36039951 -166288396 + L2 LINE L2 2897 3044 -269 309 357 30 8 chr4 36040208 36040443 -166287904 - L1ME LINE L1 -547 5574 5335 21 57 0 0 chr4 36040479 36040514 -166287833 + AT_rich Low_complexity Low_complexity 1 35 0 794 265 12 74 chr4 36041156 36041480 -166286867 + Charlie1a DNA MER1_type 1 304 -1151 1093 103 6 0 chr4 36041484 36041640 -166286707 + AluY SINE Alu 123 279 -32 183 42 0 0 chr4 36041643 36041667 -166286680 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1213 240 163 3 chr4 36041676 36042039 -166286308 + Charlie1a DNA MER1_type 305 725 -730 1118 152 34 5 chr4 36042045 36042249 -166286098 - MER41B LTR ERV1 0 635 426 326 307 50 10 chr4 36042828 36042929 -166285418 - L2 LINE L2 -14 3299 3195 21 0 0 0 chr4 36043597 36043618 -166284729 + AT_rich Low_complexity Low_complexity 1 21 0 1836 66 4 0 chr4 36044006 36044234 -166284113 - AluY SINE Alu -20 291 63 265 385 65 10 chr4 36044598 36044798 -166283549 + MIR SINE MIR 46 256 -6 2123 118 3 0 chr4 36045702 36046030 -166282317 + AluSq SINE Alu 1 329 0 526 318 46 5 chr4 36046153 36046348 -166281999 + MIR SINE MIR 56 258 -4 198 0 0 0 chr4 36047090 36047112 -166281235 + (T)n Simple_repeat Simple_repeat 1 22 0 553 239 38 68 chr4 36048108 36048401 -166279946 + L1ME2 LINE L1 4871 5154 -992 718 164 23 23 chr4 36048784 36048912 -166279435 + FLAM_C SINE Alu 6 133 -10 201 255 0 0 chr4 36048991 36049038 -166279309 + (TAG)n Simple_repeat Simple_repeat 3 49 0 2195 99 7 7 chr4 36049168 36049471 -166278876 - AluSc SINE Alu -6 303 1 1350 112 0 54 chr4 36049471 36049694 -166278653 - MER4D LTR ERV1 -692 211 1 229 242 71 50 chr4 36049733 36049832 -166278515 - MER91C DNA MER1_type -36 104 4 1301 96 0 28 chr4 36050033 36050210 -166278137 - AluY SINE Alu -137 174 3 8437 50 20 1 chr4 36050498 36051549 -166276798 - MER11C LTR ERVK 0 1071 1 2319 109 0 3 chr4 36052158 36052470 -166275877 - AluY SINE Alu 0 311 1 8719 237 28 14 chr4 36052644 36055117 -166273230 + L1 LINE L1 2202 4707 -1439 202 284 0 45 chr4 36055948 36056015 -166272332 + MIR SINE MIR 164 227 -35 1987 96 17 7 chr4 36056050 36056341 -166272006 + AluSp SINE Alu 1 294 -19 471 113 0 0 chr4 36056343 36056414 -166271933 + (TA)n Simple_repeat Simple_repeat 1 71 0 24 32 0 0 chr4 36057449 36057480 -166270867 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr4 36059062 36059104 -166269243 + AT_rich Low_complexity Low_complexity 1 42 0 975 264 61 23 chr4 36059307 36059765 -166268582 + L1ME2 LINE L1 5210 5695 -471 1622 187 30 41 chr4 36059799 36059894 -166268453 + MLT1A1 LTR MaLR 1 96 -269 1404 215 96 11 chr4 36059894 36060257 -166268090 - MSTD LTR MaLR -2 394 1 1622 187 30 41 chr4 36060257 36060530 -166267817 + MLT1A1 LTR MaLR 96 365 0 559 244 118 79 chr4 36060537 36060877 -166267470 + L1ME2 LINE L1 5762 6114 -50 1866 261 90 30 chr4 36061026 36061300 -166267047 - L1M4 LINE L1 -2672 3474 3218 2411 87 0 0 chr4 36061300 36061609 -166266738 - AluY SINE Alu -2 309 1 1866 261 90 30 chr4 36061609 36061637 -166266710 - L1M4 LINE L1 -2928 3218 3193 436 193 0 0 chr4 36061637 36061720 -166266627 - L1PB4 LINE L1 0 6156 6074 1866 261 90 30 chr4 36061720 36062356 -166265991 - L1M4 LINE L1 -2953 3193 2463 973 24 16 0 chr4 36062356 36062480 -166265867 + (TTTC)n Simple_repeat Simple_repeat 3 128 0 1866 261 90 30 chr4 36062480 36062594 -166265753 - L1M4 LINE L1 -3683 2463 2357 322 175 103 19 chr4 36062600 36062704 -166265643 - FLAM_A SINE Alu -19 114 4 353 200 0 21 chr4 36062744 36062839 -166265508 - L1M4 LINE L1 -3772 2374 2282 22 0 0 0 chr4 36063311 36063333 -166265014 + AT_rich Low_complexity Low_complexity 1 22 0 5616 205 61 19 chr4 36063341 36063461 -166264886 + L1MC3 LINE L1 6399 6513 -1272 2215 114 3 0 chr4 36063461 36063767 -166264580 + AluSp SINE Alu 3 309 -4 5616 205 61 19 chr4 36063767 36064976 -166263371 + L1MC3 LINE L1 6513 7783 -2 234 0 0 0 chr4 36065572 36065598 -166262749 + (CA)n Simple_repeat Simple_repeat 2 27 0 2079 217 25 70 chr4 36065672 36066244 -166262103 + MLT2B3 LTR ERVL 1 546 -8 221 276 17 0 chr4 36066537 36066595 -166261752 + L2 LINE L2 3255 3313 0 1197 125 65 0 chr4 36067973 36068157 -166260190 + THE1C LTR MaLR 180 375 0 374 347 20 7 chr4 36068351 36068501 -166259846 - L2 LINE L2 0 3313 3162 990 270 19 4 chr4 36068513 36068780 -166259567 + MER69 DNA AcHobo 2 272 -2254 227 183 0 42 chr4 36068849 36068920 -166259427 + A-rich Low_complexity Low_complexity 3 70 0 278 197 0 0 chr4 36068938 36069004 -166259343 + (TA)n Simple_repeat Simple_repeat 2 67 0 633 316 111 20 chr4 36069063 36069614 -166258733 + L1ME3A LINE L1 5297 5897 -273 2158 69 4 7 chr4 36069784 36070059 -166258288 + AluY SINE Alu 21 294 -17 258 267 73 30 chr4 36070067 36070206 -166258141 - L1P LINE L1 -725 5429 5285 22 35 0 0 chr4 36070265 36070294 -166258053 + AT_rich Low_complexity Low_complexity 1 29 0 211 346 12 0 chr4 36070531 36070612 -166257735 + (CATATA)n Simple_repeat Simple_repeat 2 83 0 320 341 23 8 chr4 36070673 36070805 -166257542 + MIR3 SINE MIR 39 172 -36 969 225 47 55 chr4 36071464 36071868 -166256479 + MLT1A2 LTR MaLR 1 372 -2 1674 231 119 35 chr4 36071899 36072379 -166255968 - MLT2B1 LTR ERVL 0 520 1 1091 274 65 21 chr4 36072648 36073031 -166255316 + MER110 LTR ERV1 61 460 -31 1614 95 0 0 chr4 36073919 36074141 -166254206 - L1PA7 LINE L1 -8 6146 5925 25 0 0 0 chr4 36074372 36074397 -166253950 + AT_rich Low_complexity Low_complexity 1 25 0 238 270 99 45 chr4 36074496 36074607 -166253740 - MIR SINE MIR -115 147 31 243 0 0 0 chr4 36075724 36075751 -166252596 + (TG)n Simple_repeat Simple_repeat 2 28 0 255 386 0 0 chr4 36076336 36076406 -166251941 - L2 LINE L2 -53 3219 3150 1867 152 27 10 chr4 36076474 36076771 -166251576 + AluSx SINE Alu 1 302 -10 1466 194 35 46 chr4 36077864 36078231 -166250116 + MLT1A1 LTR MaLR 1 363 -2 333 263 120 15 chr4 36078961 36079094 -166249253 - MIR SINE MIR -6 256 110 286 100 0 0 chr4 36079198 36079238 -166249109 + L1MA8 LINE L1 6040 6079 -212 247 308 69 26 chr4 36079292 36079533 -166248814 + L1M4 LINE L1 3361 3614 -2532 540 283 89 61 chr4 36079768 36080642 -166247705 + L1M4 LINE L1 3818 4716 -1430 222 37 0 0 chr4 36080842 36080869 -166247478 + (CTA)n Simple_repeat Simple_repeat 1 27 0 405 308 8 15 chr4 36080870 36081000 -166247347 - MIR SINE MIR -8 254 126 207 325 26 13 chr4 36082182 36082259 -166246088 + MIR SINE MIR 45 122 -86 360 256 24 0 chr4 36082315 36082397 -166245950 + L2 LINE L2 2711 2794 -520 2340 164 5 5 chr4 36082551 36082948 -166245399 + MER31A LTR ERV1 6 402 -83 26 64 0 0 chr4 36083050 36083097 -166245250 + AT_rich Low_complexity Low_complexity 1 47 0 1073 269 67 111 chr4 36083845 36084424 -166243923 - L2 LINE L2 -604 2710 2157 211 203 54 81 chr4 36084565 36084639 -166243708 + MIR SINE MIR 49 120 -142 42 48 0 0 chr4 36084705 36084768 -166243579 + AT_rich Low_complexity Low_complexity 1 63 0 229 172 17 17 chr4 36085080 36085138 -166243209 + (TA)n Simple_repeat Simple_repeat 1 58 0 22 56 0 0 chr4 36085673 36085709 -166242638 + AT_rich Low_complexity Low_complexity 1 36 0 278 176 68 27 chr4 36085754 36085828 -166242519 + MADE1 DNA Mariner 1 77 -3 242 321 38 9 chr4 36086355 36086461 -166241886 + L1ME LINE L1 5747 5855 -266 284 149 0 0 chr4 36087234 36087281 -166241066 + U7 snRNA snRNA 6 52 -11 339 326 11 38 chr4 36087321 36087505 -166240842 + MIR SINE MIR 48 226 -36 772 181 0 8 chr4 36089410 36089537 -166238810 + FLAM_C SINE Alu 1 126 -17 183 326 0 0 chr4 36089610 36089656 -166238691 + MIR SINE MIR 47 92 -170 467 316 64 47 chr4 36089851 36090148 -166238199 - MLT1I LTR MaLR -2 407 106 207 0 0 0 chr4 36090722 36090745 -166237602 + (T)n Simple_repeat Simple_repeat 1 23 0 268 385 53 18 chr4 36092675 36092901 -166235446 + MIR SINE MIR 28 261 -1 25 51 0 0 chr4 36092901 36092940 -166235407 + AT_rich Low_complexity Low_complexity 1 39 0 218 186 0 0 chr4 36094622 36094665 -166233682 + (ATG)n Simple_repeat Simple_repeat 3 45 0 180 0 0 0 chr4 36094775 36094795 -166233552 + (CA)n Simple_repeat Simple_repeat 2 21 0 282 398 46 15 chr4 36094963 36095222 -166233125 - L3 LINE CR1 -328 1249 983 2179 140 82 31 chr4 36095594 36096007 -166232340 + Tigger2a DNA MER2_type 1 434 0 1877 162 7 3 chr4 36096248 36096550 -166231797 - AluSx SINE Alu -9 303 1 24 0 0 0 chr4 36096741 36096765 -166231582 + AT_rich Low_complexity Low_complexity 1 24 0 28 71 0 0 chr4 36097142 36097198 -166231149 + AT_rich Low_complexity Low_complexity 1 56 0 2442 109 17 6 chr4 36097578 36097936 -166230411 - THE1B LTR MaLR -2 362 1 300 211 0 0 chr4 36099623 36099694 -166228653 + (CATA)n Simple_repeat Simple_repeat 4 74 0 1057 240 111 27 chr4 36099720 36100207 -166228140 - L1M4 LINE L1 -893 5253 4726 437 229 139 19 chr4 36100379 36100541 -166227806 + L1M1 LINE L1 2857 3118 -4612 207 0 0 0 chr4 36100556 36100579 -166227768 + (TA)n Simple_repeat Simple_repeat 1 23 0 1755 256 111 46 chr4 36100593 36101993 -166226354 + L1M1 LINE L1 3907 5397 -2168 1379 268 97 23 chr4 36102046 36102767 -166225580 + L1ME1 LINE L1 5394 6176 -2 395 342 9 22 chr4 36102789 36103017 -166225330 + MLT1L LTR MaLR 3 227 -388 338 266 55 73 chr4 36103222 36103440 -166224907 + MER112 DNA MER1_type 38 251 -9 330 332 154 4 chr4 36104858 36105105 -166223242 - L2 LINE L2 -985 2329 2046 31 0 0 0 chr4 36106321 36106352 -166221995 + AT_rich Low_complexity Low_complexity 1 31 0 1904 306 145 38 chr4 36106358 36107530 -166220817 - L2 LINE L2 -349 2965 1669 2104 234 43 16 chr4 36107534 36108021 -166220326 - MLT1D LTR MaLR 0 505 6 557 348 13 4 chr4 36108024 36108254 -166220093 - L2 LINE L2 -1643 1671 1440 1643 222 55 26 chr4 36108587 36108903 -166219444 + MSTD LTR MaLR 1 331 -65 1610 134 90 4 chr4 36108903 36109180 -166219167 - AluSx SINE Alu -11 301 1 1643 222 55 26 chr4 36109180 36109242 -166219105 + MSTD LTR MaLR 331 390 -6 313 333 31 0 chr4 36109563 36109692 -166218655 + L2 LINE L2 1539 1671 -1643 268 247 0 27 chr4 36109717 36109790 -166218557 - MSTD LTR MaLR -193 203 133 2077 138 3 0 chr4 36109869 36110181 -166218166 - AluSp SINE Alu 0 313 1 268 250 25 25 chr4 36110999 36111079 -166217268 - MIR SINE MIR -120 142 63 22 0 0 0 chr4 36112378 36112400 -166215947 + AT_rich Low_complexity Low_complexity 1 22 0 452 364 57 28 chr4 36112439 36112791 -166215556 + L1MEc LINE L1 72 433 -5963 558 254 156 77 chr4 36113101 36113620 -166214727 - MER34B LTR ERV1 -5 560 1 2287 115 27 21 chr4 36114075 36114448 -166213899 + THE1C LTR MaLR 1 375 0 324 296 92 46 chr4 36114450 36114646 -166213701 - L1M4 LINE L1 -929 5217 5013 2180 217 30 16 chr4 36114713 36115211 -166213136 - MLT1D LTR MaLR 0 505 1 251 297 78 15 chr4 36115462 36115731 -166212616 - L1M4 LINE L1 -1529 4617 4332 1085 318 59 36 chr4 36115772 36116522 -166211825 - L2 LINE L2 -11 3302 2531 400 349 88 87 chr4 36116566 36116638 -166211709 - L1MEd LINE L1 -5339 780 710 2299 102 3 6 chr4 36116638 36116951 -166211396 - AluSp SINE Alu -1 312 1 400 349 88 87 chr4 36116951 36117614 -166210733 - L1MEd LINE L1 -5409 710 44 531 295 35 10 chr4 36118989 36119189 -166209158 + MER63A DNA MER1_type 3 207 -3 250 236 24 32 chr4 36119521 36119644 -166208703 + (CATATA)n Simple_repeat Simple_repeat 3 124 0 1980 123 3 0 chr4 36119963 36120269 -166208078 + AluSq SINE Alu 1 307 0 23 0 0 0 chr4 36120396 36120419 -166207928 + AT_rich Low_complexity Low_complexity 1 23 0 319 231 63 47 chr4 36120619 36120776 -166207571 + L1MC4 LINE L1 6438 6597 -1398 339 25 0 0 chr4 36120788 36120828 -166207519 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 25 0 0 0 chr4 36121101 36121126 -166207221 + AT_rich Low_complexity Low_complexity 1 25 0 219 383 66 16 chr4 36121240 36121423 -166206924 + MIR SINE MIR 4 195 -67 639 364 80 10 chr4 36121531 36121918 -166206429 - L3 LINE CR1 -148 1429 1016 301 353 6 19 chr4 36122436 36122592 -166205755 - L3 LINE CR1 -457 1120 967 261 384 0 8 chr4 36122818 36122943 -166205404 - L2 LINE L2 -1 3312 3189 2734 164 21 41 chr4 36123260 36123840 -166204507 - L1MB3 LINE L1 -1 6182 5615 2216 118 0 0 chr4 36124389 36124694 -166203653 + AluSg SINE Alu 1 305 -5 576 312 114 41 chr4 36124910 36125394 -166202953 + L2 LINE L2 2158 2676 -638 291 289 110 66 chr4 36125709 36125982 -166202365 + MLT1L LTR MaLR 186 470 -145 1228 263 64 72 chr4 36126047 36126534 -166201813 - MLT1H LTR MaLR 0 549 67 381 58 0 0 chr4 36127016 36127068 -166201279 + (CA)n Simple_repeat Simple_repeat 2 53 0 217 215 13 13 chr4 36127129 36127208 -166201139 + (TA)n Simple_repeat Simple_repeat 1 79 0 23 78 0 0 chr4 36128335 36128386 -166199961 + AT_rich Low_complexity Low_complexity 1 51 0 237 65 0 0 chr4 36128937 36128968 -166199379 + (TG)n Simple_repeat Simple_repeat 2 32 0 210 231 0 19 chr4 36128979 36129031 -166199316 + GA-rich Low_complexity Low_complexity 2 52 0 210 208 0 0 chr4 36129178 36129231 -166199116 + (CATA)n Simple_repeat Simple_repeat 1 53 0 446 319 45 39 chr4 36130321 36130599 -166197748 - MLT1I LTR MaLR -14 395 113 1316 212 43 58 chr4 36130599 36130749 -166197598 + MLT1B LTR MaLR 1 152 -238 2156 61 43 4 chr4 36130749 36131029 -166197318 - AluY SINE Alu -20 291 1 1316 212 43 58 chr4 36131029 36131274 -166197073 + MLT1B LTR MaLR 152 390 0 446 319 45 39 chr4 36131274 36131330 -166197017 - MLT1I LTR MaLR -296 113 59 279 271 93 28 chr4 36133377 36133484 -166194863 - L3b LINE CR1 -264 1319 1206 214 279 81 54 chr4 36134882 36134993 -166193354 - L2 LINE L2 -14 3258 3145 244 218 40 97 chr4 36135483 36135607 -166192740 + MIR3 SINE MIR 86 202 -6 3390 135 138 24 chr4 36139433 36140138 -166188209 + LTR1 LTR ERV1 1 785 0 907 241 34 8 chr4 36140300 36140565 -166187782 - LTR37B LTR ERV1 -24 444 173 7477 22 5 1 chr4 36141259 36142255 -166186092 + L1PA3 LINE L1 5173 6155 0 32 67 0 0 chr4 36143771 36143831 -166184516 + AT_rich Low_complexity Low_complexity 1 60 0 329 115 148 0 chr4 36144995 36145056 -166183291 + MADE1 DNA Mariner 11 80 0 185 292 67 33 chr4 36145100 36145220 -166183127 + MIR SINE MIR 125 248 -14 283 378 37 7 chr4 36145342 36145477 -166182870 + MLT1K LTR MaLR 100 238 -350 1766 260 41 34 chr4 36145587 36146170 -166182177 - MER63C DNA MER1_type -130 930 340 2728 13 0 0 chr4 36146170 36146471 -166181876 - AluYa5 SINE Alu -10 301 1 1766 260 41 34 chr4 36146471 36146541 -166181806 - MER63C DNA MER1_type -720 340 272 23 0 0 0 chr4 36198009 36198032 -166130315 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 36198098 36198121 -166130226 + AT_rich Low_complexity Low_complexity 1 23 0 3113 121 34 38 chr4 36201503 36202058 -166126289 - Tigger3b DNA MER2_type 0 1231 679 307 308 55 59 chr4 36202728 36202965 -166125382 - MIR SINE MIR -9 253 18 22 0 0 0 chr4 36203050 36203072 -166125275 + AT_rich Low_complexity Low_complexity 1 22 0 717 278 79 8 chr4 36203086 36203327 -166125020 - L1MC4a LINE L1 -1054 6754 6497 223 273 91 13 chr4 36204406 36204483 -166123864 + MIR SINE MIR 28 110 -152 412 272 34 92 chr4 36204485 36204691 -166123656 - LTR16A LTR ERVL -241 209 16 747 308 40 16 chr4 36204892 36205142 -166123205 + MIR SINE MIR 7 262 0 1969 96 48 0 chr4 36205723 36206024 -166122323 + AluY SINE Alu 1 314 0 557 251 181 15 chr4 36206725 36206924 -166121423 + AluJb SINE Alu 25 256 -56 897 303 119 11 chr4 36207854 36208233 -166120114 + LTR16A LTR ERVL 23 442 -8 3512 124 50 5 chr4 36208947 36209552 -166118795 - Tigger3b DNA MER2_type -24 1207 576 1279 115 0 1 chr4 36209552 36209812 -166118535 + AluSg1 SINE Alu 1 295 -17 1715 125 39 32 chr4 36209812 36210123 -166118224 - Tigger3b DNA MER2_type -653 578 266 2511 90 8 6 chr4 36210123 36210477 -166117870 - THE1A LTR MaLR 0 355 1 2669 84 3 3 chr4 36210897 36211252 -166117095 - THE1A LTR MaLR 0 355 1 5249 162 13 45 chr4 36211252 36212306 -166116041 - THE1A-int LTR MaLR 0 1580 560 2618 86 11 0 chr4 36213356 36213707 -166114640 + THE1A LTR MaLR 1 355 0 4650 134 12 25 chr4 36213707 36214512 -166113835 + THE1A-int LTR MaLR 1 795 -785 22 70 0 0 chr4 36215356 36215399 -166112948 + AT_rich Low_complexity Low_complexity 1 43 0 2318 95 7 0 chr4 36215403 36215708 -166112639 + AluY SINE Alu 1 307 -4 1087 137 22 0 chr4 36216555 36216737 -166111610 - L1MA2 LINE L1 0 6304 6119 1651 176 0 4 chr4 36217075 36217348 -166110999 - AluSx SINE Alu -39 273 2 21 0 0 0 chr4 36217609 36217630 -166110717 + AT_rich Low_complexity Low_complexity 1 21 0 220 375 70 8 chr4 36218429 36218557 -166109790 - L2 LINE L2 0 3313 3178 236 347 18 42 chr4 36218982 36219149 -166109198 + L2 LINE L2 2185 2347 -967 186 43 0 0 chr4 36219151 36219174 -166109173 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 2259 109 142 8 chr4 36219266 36219661 -166108686 + LTR7 LTR ERV1 1 448 -2 189 178 0 0 chr4 36219691 36219736 -166108611 + CT-rich Low_complexity Low_complexity 1 45 0 486 33 0 0 chr4 36219736 36219796 -166108551 + (TG)n Simple_repeat Simple_repeat 1 60 0 22 0 0 0 chr4 36219942 36219964 -166108383 + AT_rich Low_complexity Low_complexity 1 22 0 236 267 23 35 chr4 36221269 36221355 -166106992 + GA-rich Low_complexity Low_complexity 4 88 0 3871 134 45 97 chr4 36222911 36223884 -166104463 + Tigger3b DNA MER2_type 10 932 -299 392 330 57 62 chr4 36224053 36224075 -166104272 - MIR SINE MIR -30 232 211 2123 73 0 0 chr4 36224075 36224336 -166104011 - AluY SINE Alu -50 261 1 392 330 57 62 chr4 36224336 36224540 -166103807 - MIR SINE MIR -51 211 7 386 213 53 0 chr4 36224650 36224725 -166103622 - Tigger5 DNA MER2_type -2244 79 1 506 272 179 0 chr4 36224725 36224909 -166103438 - L2 LINE L2 -431 2883 2667 506 133 11 0 chr4 36225949 36226039 -166102308 + CT-rich Low_complexity Low_complexity 4 94 0 575 305 62 54 chr4 36226107 36226675 -166101672 - L1MEc LINE L1 -4786 1797 1193 281 309 57 16 chr4 36228755 36228878 -166099469 - MIR SINE MIR -102 160 33 5304 126 22 13 chr4 36229048 36230005 -166098342 - L1PA13 LINE L1 0 6163 5174 5071 190 15 2 chr4 36230105 36231109 -166097238 - L1PA13 LINE L1 -1386 4760 3744 2519 50 0 0 chr4 36232674 36232972 -166095375 - AluY SINE Alu -13 298 1 213 372 29 29 chr4 36233088 36233260 -166095087 + L2 LINE L2 2478 2649 -665 821 298 103 16 chr4 36233345 36233657 -166094690 - LTR16A LTR ERVL 0 450 112 1811 317 63 43 chr4 36234112 36235074 -166093273 - HERV16 LTR ERVL -3516 1480 499 1082 263 52 44 chr4 36235509 36235966 -166092381 + LTR40a LTR ERVL 59 519 0 422 181 21 0 chr4 36236307 36236401 -166091946 + CT-rich Low_complexity Low_complexity 3 98 0 1315 116 20 15 chr4 36238277 36238475 -166089872 - AluSg/x SINE Alu -19 293 95 2727 287 72 6 chr4 36238717 36239180 -166089167 + MER50 LTR ERV1 1 521 -213 1814 109 0 30 chr4 36239180 36239445 -166088902 + AluSc SINE Alu 1 257 -52 2727 287 72 6 chr4 36239445 36239637 -166088710 + MER50 LTR ERV1 521 699 -35 242 319 11 11 chr4 36239670 36239764 -166088583 + MIR3 SINE MIR 76 169 -39 555 260 83 28 chr4 36239933 36240114 -166088233 - MIR SINE MIR 0 262 72 189 107 0 0 chr4 36241267 36241295 -166087052 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 2108 113 10 13 chr4 36241301 36241602 -166086745 + AluSq SINE Alu 3 302 -11 3917 195 25 7 chr4 36243040 36243885 -166084462 - L1MB2 LINE L1 -2 6169 5310 2291 99 0 10 chr4 36244190 36244513 -166083834 - AluSg SINE Alu 0 310 1 426 319 52 47 chr4 36245668 36246204 -166082143 + L1ME LINE L1 279 817 -5579 402 340 25 0 chr4 36246264 36246508 -166081839 + L1ME LINE L1 4010 4259 -1956 248 213 27 53 chr4 36246556 36246631 -166081716 - LTR16A1 LTR ERVL -6 451 379 304 282 26 60 chr4 36246789 36246906 -166081441 - LTR16A LTR ERVL -278 172 60 2633 261 37 21 chr4 36246964 36248185 -166080162 + L1ME LINE L1 4299 5535 -696 558 218 98 60 chr4 36248197 36248431 -166079916 + MER5C DNA MER1_type 82 324 0 210 261 217 26 chr4 36250177 36250292 -166078055 + MIR SINE MIR 126 262 0 949 211 5 140 chr4 36250584 36250742 -166077605 + MLT1A1 LTR MaLR 1 179 -186 1244 212 3 39 chr4 36250742 36251048 -166077299 + AluJb SINE Alu 1 295 -7 949 211 5 140 chr4 36251048 36251311 -166077036 + MLT1A1 LTR MaLR 179 365 0 306 67 0 0 chr4 36251399 36251444 -166076903 + (CA)n Simple_repeat Simple_repeat 2 46 0 262 331 34 47 chr4 36251605 36251753 -166076594 + MIR SINE MIR 87 232 -30 300 353 132 24 chr4 36252297 36252677 -166075670 - L2 LINE L2 -4 3309 2889 313 246 0 0 chr4 36253212 36253273 -166075074 - AluJ/FRAM SINE Alu -9 293 233 26 30 0 0 chr4 36253808 36253841 -166074506 + AT_rich Low_complexity Low_complexity 1 33 0 1148 199 39 98 chr4 36253956 36254444 -166073903 - LTR37B LTR ERV1 0 468 10 409 297 13 39 chr4 36254453 36254608 -166073739 - MIR SINE MIR -28 234 84 22 0 0 0 chr4 36254876 36254898 -166073449 + AT_rich Low_complexity Low_complexity 1 22 0 500 284 118 71 chr4 36255502 36256093 -166072254 + L1MC1 LINE L1 2199 2817 -3329 8200 239 34 13 chr4 36256229 36259460 -166068887 + L1MC1 LINE L1 2709 6133 -200 575 184 0 0 chr4 36259484 36259582 -166068765 + AluJb SINE Alu 204 301 -11 1243 153 5 9 chr4 36259582 36259797 -166068550 + L1MC1 LINE L1 6120 6333 0 353 329 136 14 chr4 36259797 36260077 -166068270 - L2 LINE L2 -1359 1955 1642 3574 258 70 52 chr4 36260085 36261138 -166067209 + L1ME1 LINE L1 3554 4586 -1580 1941 168 10 39 chr4 36261138 36261524 -166066823 - THE1C LTR MaLR 0 375 1 3574 258 70 52 chr4 36261524 36261947 -166066400 + L1ME1 LINE L1 4586 5000 -1166 2075 126 52 25 chr4 36261947 36262312 -166066035 - THE1C LTR MaLR 0 375 1 3574 258 70 52 chr4 36262312 36262625 -166065722 + L1ME1 LINE L1 5000 5306 -860 616 97 39 0 chr4 36262625 36262728 -166065619 + L1PA14 LINE L1 6055 6161 0 3574 258 70 52 chr4 36262728 36263466 -166064881 + L1ME1 LINE L1 5306 6122 -44 369 216 75 75 chr4 36263366 36263500 -166064847 + L1MA10 LINE L1 6174 6307 -27 * 27 29 0 0 chr4 36263859 36263893 -166064454 + AT_rich Low_complexity Low_complexity 1 34 0 184 229 21 146 chr4 36264474 36264570 -166063777 + L2 LINE L2 3173 3256 -16 365 298 26 48 chr4 36264614 36264886 -166063461 + L1ME4a LINE L1 5562 5827 -294 27 0 0 0 chr4 36264896 36264923 -166063424 + AT_rich Low_complexity Low_complexity 1 27 0 25 31 0 0 chr4 36265657 36265689 -166062658 + AT_rich Low_complexity Low_complexity 1 32 0 1203 210 80 126 chr4 36266031 36266541 -166061806 - MER67D LTR ERV1 -3 511 25 241 239 0 42 chr4 36266639 36266710 -166061637 - AluJ/monomer SINE Alu 0 302 235 1484 216 76 15 chr4 36266710 36267039 -166061308 + MER66A-int LTR ERV1 3102 3450 -3226 1591 187 48 95 chr4 36267040 36268053 -166060294 + MER66A-int LTR ERV1 2943 4423 -2253 370 220 110 9 chr4 36268053 36268162 -166060185 + MER4D LTR ERV1 41 160 -712 1169 179 25 20 chr4 36268190 36268467 -166059880 + MER66A-int LTR ERV1 4604 6176 -1580 2042 167 26 0 chr4 36268550 36268892 -166059455 + MER66A-int LTR ERV1 6324 6674 -2 970 219 97 83 chr4 36268932 36269372 -166058975 + MER66A LTR ERV1 102 467 -11 183 298 0 0 chr4 36270387 36270434 -166057913 + L2 LINE L2 1765 1811 -1503 193 29 59 0 chr4 36270530 36270564 -166057783 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 294 273 34 19 chr4 36272763 36272941 -166055406 - MER41B LTR ERV1 -209 426 112 5049 211 34 14 chr4 36273115 36274578 -166053769 - L1MC1 LINE L1 -16 6317 4834 194 258 15 83 chr4 36275352 36275484 -166052863 + MIR SINE MIR 122 244 -18 21 57 0 0 chr4 36275766 36275801 -166052546 + AT_rich Low_complexity Low_complexity 1 35 0 230 242 20 141 chr4 36276421 36276570 -166051777 - L2 LINE L2 -256 3057 2927 298 288 0 0 chr4 36276941 36277021 -166051326 + (TA)n Simple_repeat Simple_repeat 1 80 0 2621 137 121 0 chr4 36277061 36277508 -166050839 - MER61D LTR ERV1 0 501 1 242 320 14 33 chr4 36277823 36277952 -166050395 + MIR SINE MIR 53 181 -27 703 174 57 113 chr4 36278823 36279053 -166049294 + MER20 DNA MER1_type 3 219 0 21 57 0 0 chr4 36279406 36279441 -166048906 + AT_rich Low_complexity Low_complexity 1 35 0 507 342 149 22 chr4 36279839 36280505 -166047842 - L2 LINE L2 0 3313 2532 1320 133 41 0 chr4 36280505 36280723 -166047624 + MER30 DNA MER1_type 4 230 0 507 342 149 22 chr4 36280723 36280797 -166047550 - L2 LINE L2 -781 2532 2469 265 209 45 30 chr4 36280801 36280868 -166047479 + (CAGAGA)n Simple_repeat Simple_repeat 4 71 0 2180 166 43 0 chr4 36280869 36281237 -166047110 - MSTA LTR MaLR -44 384 1 1641 193 16 10 chr4 36281285 36281596 -166046751 + MLT1A1 LTR MaLR 53 365 0 1661 185 79 6 chr4 36282299 36282639 -166045708 - MLT1A1 LTR MaLR 0 365 1 205 263 95 44 chr4 36283144 36283281 -166045066 - MIR SINE MIR 0 262 119 230 305 132 41 chr4 36284460 36284800 -166043547 + LTR16A1 LTR ERVL 73 441 -9 246 301 34 57 chr4 36284825 36284987 -166043360 - MLT1J1 LTR MaLR -280 166 36 1317 249 33 16 chr4 36285016 36285382 -166042965 - MLT1A2 LTR MaLR -2 372 1 296 311 67 62 chr4 36285608 36285746 -166042601 - L2 LINE L2 0 3313 3172 2027 121 7 10 chr4 36285746 36286043 -166042304 - AluSx SINE Alu -16 296 1 296 311 67 62 chr4 36286043 36286097 -166042250 - L2 LINE L2 -141 3172 3120 214 291 0 0 chr4 36286358 36286413 -166041934 + L2 LINE L2 3218 3272 0 587 329 140 3 chr4 36286764 36287086 -166041261 - L2 LINE L2 -82 3231 2866 285 181 309 11 chr4 36287117 36287211 -166041136 - LTR37B LTR ERV1 -291 177 56 1256 74 17 0 chr4 36287864 36288040 -166040307 + L1PA7 LINE L1 5975 6153 -1 1434 194 138 0 chr4 36288278 36288598 -166039749 + MSTD LTR MaLR 1 364 -32 2376 244 51 26 chr4 36289155 36289721 -166038626 - L1MDa LINE L1 -4039 2501 1906 623 189 90 0 chr4 36289721 36289843 -166038504 - FLAM_A SINE Alu 0 133 1 2376 244 51 26 chr4 36289843 36290093 -166038254 - L1MDa LINE L1 -4634 1906 1664 243 0 0 0 chr4 36290309 36290336 -166038011 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 332 294 0 28 chr4 36290539 36290648 -166037699 + MER5A DNA MER1_type 4 109 -80 267 363 0 0 chr4 36290709 36290800 -166037547 - MER5A DNA MER1_type -90 99 9 244 325 214 0 chr4 36291322 36291439 -166036908 - MER5A DNA MER1_type -1 188 47 290 342 0 0 chr4 36291650 36291726 -166036621 + MER5A DNA MER1_type 10 85 -104 351 274 111 17 chr4 36291862 36291979 -166036368 + L2 LINE L2 3183 3310 -3 321 337 99 51 chr4 36293089 36293383 -166034964 - MLT1H LTR MaLR -203 346 39 280 145 16 16 chr4 36293495 36293557 -166034790 + (TA)n Simple_repeat Simple_repeat 2 63 0 304 242 20 30 chr4 36293560 36293659 -166034688 - L1MC4 LINE L1 -1339 6703 6606 361 337 53 34 chr4 36293692 36294011 -166034336 - L2 LINE L2 -256 3057 2738 206 245 0 20 chr4 36294120 36294169 -166034178 - MIR SINE MIR -117 145 98 21 0 0 0 chr4 36294685 36294706 -166033641 + AT_rich Low_complexity Low_complexity 1 21 0 497 257 21 96 chr4 36295389 36295576 -166032771 - MER45A DNA AcHobo -5 173 1 245 274 14 41 chr4 36295686 36295759 -166032588 - MLT1E1 LTR MaLR -281 274 204 216 333 0 0 chr4 36295983 36296046 -166032301 + L2 LINE L2 3008 3070 -243 851 0 0 0 chr4 36296054 36296148 -166032199 + AluYa5/8 SINE Alu 203 296 -14 397 287 63 21 chr4 36296167 36296310 -166032037 + L2 LINE L2 3165 3313 0 755 214 7 0 chr4 36296435 36296601 -166031746 + FRAM SINE Alu 1 167 0 338 342 6 13 chr4 36296993 36297151 -166031196 + (TATATG)n Simple_repeat Simple_repeat 5 161 0 26 64 0 0 chr4 36297687 36297734 -166030613 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr4 36297910 36297932 -166030415 + AT_rich Low_complexity Low_complexity 1 22 0 453 209 9 55 chr4 36298144 36298254 -166030093 - AluSg/x SINE Alu -25 285 181 1620 170 0 0 chr4 36298263 36298516 -166029831 - AluSx SINE Alu -26 286 34 5432 188 19 16 chr4 36299746 36300892 -166027455 + L1MC1 LINE L1 5186 6333 0 1813 241 60 20 chr4 36301063 36301515 -166026832 - MLT2B1 LTR ERVL -43 477 8 213 246 16 0 chr4 36301693 36301754 -166026593 + A-rich Low_complexity Low_complexity 1 62 0 211 308 100 39 chr4 36301916 36302046 -166026301 + L2 LINE L2 2801 2938 -376 393 276 55 8 chr4 36302334 36302461 -166025886 - MIR SINE MIR -3 259 127 905 225 40 18 chr4 36303548 36303770 -166024577 - MLT1E1 LTR MaLR -423 231 5 3975 161 10 9 chr4 36304556 36305240 -166023107 + MER50 LTR ERV1 1 685 -49 321 221 47 35 chr4 36305389 36305475 -166022872 + L2 LINE L2 3225 3311 -2 277 309 146 0 chr4 36305575 36305685 -166022662 + L2 LINE L2 3187 3312 -1 22 0 0 0 chr4 36305865 36305887 -166022460 + AT_rich Low_complexity Low_complexity 1 22 0 2404 71 0 3 chr4 36305929 36306239 -166022108 - AluY SINE Alu -2 309 1 351 324 88 28 chr4 36306642 36306858 -166021489 - MIR SINE MIR -13 249 21 724 156 251 11 chr4 36307018 36307197 -166021150 + L1MC1 LINE L1 6082 6303 -30 25 31 0 0 chr4 36307290 36307322 -166021025 + AT_rich Low_complexity Low_complexity 1 32 0 304 350 184 0 chr4 36307733 36307896 -166020451 - MIR SINE MIR -30 232 40 4823 166 17 43 chr4 36309043 36310185 -166018162 - L1PA16 LINE L1 0 6166 5040 1893 87 16 0 chr4 36310185 36310504 -166017843 - AluSx SINE Alu 0 349 27 4823 166 17 43 chr4 36310504 36310541 -166017806 - L1PA16 LINE L1 -1126 5040 5004 351 344 16 8 chr4 36311381 36311509 -166016838 - L1PA13 LINE L1 -5276 1511 1383 769 345 42 38 chr4 36311572 36312146 -166016201 - L1PA13 LINE L1 -6211 576 1 720 119 25 0 chr4 36312426 36312544 -166015803 - L1PA14 LINE L1 -3 6158 6038 3737 99 14 23 chr4 36312675 36313230 -166015117 - L1PA14 LINE L1 -112 6049 5500 * 7462 141 13 5 chr4 36313225 36314493 -166013854 - L1PA12 LINE L1 -4364 3220 1938 3066 171 29 0 chr4 36314482 36314973 -166013374 - L1PA12 LINE L1 -7076 505 1 * 26 64 0 0 chr4 36314976 36315023 -166013324 + AT_rich Low_complexity Low_complexity 1 47 0 205 240 188 10 chr4 36315329 36315425 -166012922 - MIR SINE MIR -66 196 84 3228 108 77 1 chr4 36315588 36316246 -166012101 + L1PA11 LINE L1 5107 5810 -358 620 124 44 35 chr4 36316246 36316359 -166011988 + L1PA11 LINE L1 6059 6172 -2 445 291 76 49 chr4 36316639 36316862 -166011485 + MLT1J LTR MaLR 12 240 -271 354 45 0 0 chr4 36317098 36317142 -166011205 + (CA)n Simple_repeat Simple_repeat 1 44 0 30 0 0 0 chr4 36317344 36317374 -166010973 + AT_rich Low_complexity Low_complexity 1 30 0 432 0 0 0 chr4 36317450 36317498 -166010849 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 2311 68 7 7 chr4 36318326 36318622 -166009725 - AluSg SINE Alu -14 296 1 1951 116 42 0 chr4 36318817 36319101 -166009246 - AluSx SINE Alu -3 309 14 2667 122 25 0 chr4 36319134 36319535 -166008812 - L1PA10 LINE L1 -213 5955 5545 639 209 15 22 chr4 36319615 36319749 -166008598 - FLAM_A SINE Alu 0 133 1 28 71 0 0 chr4 36319857 36319913 -166008434 + AT_rich Low_complexity Low_complexity 1 56 0 2031 136 7 10 chr4 36320094 36320396 -166007951 + AluSq SINE Alu 1 301 -12 1650 271 159 24 chr4 36321028 36322175 -166006172 - Zaphod DNA AcHobo -2605 1426 124 1986 133 0 24 chr4 36322566 36322859 -166005488 - AluSx SINE Alu -26 286 1 2712 201 140 22 chr4 36323170 36323240 -166005107 + L1MA7 LINE L1 2871 2931 -3215 2449 98 8 11 chr4 36323240 36323596 -166004751 + THE1A LTR MaLR 1 355 0 2712 201 140 22 chr4 36323596 36324348 -166003999 + L1MA7 LINE L1 2931 3790 -2356 379 176 27 0 chr4 36324784 36324858 -166003489 + L1MA7 LINE L1 3776 3851 -2295 5077 195 21 31 chr4 36324976 36326184 -166002163 + L1MA7 LINE L1 4061 5257 -889 1990 174 32 22 chr4 36326197 36326599 -166001748 + L1MA7 LINE L1 5486 5891 -400 932 215 0 40 chr4 36326607 36326830 -166001517 + L1MA7 LINE L1 6029 6242 -49 2858 167 30 19 chr4 36326889 36327417 -166000930 + MER67C LTR ERV1 160 693 -17 1479 203 43 43 chr4 36327860 36328229 -166000118 + MLT1B LTR MaLR 22 390 0 1127 232 23 94 chr4 36328502 36328895 -165999452 + MLT1A1 LTR MaLR 1 365 0 2173 118 8 70 chr4 36330830 36330876 -165997471 - THE1C LTR MaLR 0 375 328 2356 81 0 3 chr4 36330876 36331185 -165997162 + AluY SINE Alu 1 308 -3 2173 118 8 70 chr4 36331185 36331538 -165996809 - THE1C LTR MaLR -47 328 1 3622 131 5 9 chr4 36331538 36332101 -165996246 - THE1C-int LTR MaLR 0 1580 1020 1377 173 44 2 chr4 36333198 36333525 -165994822 + L1MA5 LINE L1 5101 5441 -743 269 299 0 37 chr4 36333527 36333634 -165994713 + MER34 LTR ERV1 3 105 -437 * 1401 245 86 17 chr4 36333615 36334092 -165994255 + LTR48B LTR ERV1 130 639 -5 291 56 0 0 chr4 36334097 36334133 -165994214 - L1M2 LINE L1 -816 5475 5440 1941 222 108 12 chr4 36334151 36334427 -165993920 + L1MA5 LINE L1 5509 5757 -543 363 23 0 0 chr4 36334427 36334471 -165993876 + (TG)n Simple_repeat Simple_repeat 1 44 0 1941 222 108 12 chr4 36334471 36334704 -165993643 + L1MA5 LINE L1 5757 6067 -233 2425 74 0 0 chr4 36334803 36335114 -165993233 - AluY SINE Alu 0 311 1 27 0 0 0 chr4 36335621 36335648 -165992699 + AT_rich Low_complexity Low_complexity 1 27 0 190 27 0 81 chr4 36336033 36336070 -165992277 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 722 236 128 44 chr4 36336518 36336862 -165991485 + MLT1A2 LTR MaLR 2 374 0 2168 111 7 0 chr4 36337235 36337541 -165990806 - AluSq SINE Alu -5 308 1 1414 150 80 18 chr4 36337638 36337912 -165990435 + MER7A DNA MER2_type 2 290 -56 1221 137 28 5 chr4 36337907 36338119 -165990228 + MER67C LTR ERV1 494 710 0 * 21 0 0 0 chr4 36339503 36339524 -165988823 + AT_rich Low_complexity Low_complexity 1 21 0 257 214 48 10 chr4 36339656 36339759 -165988588 + (TA)n Simple_repeat Simple_repeat 2 108 0 183 129 0 0 chr4 36339762 36339793 -165988554 + (CA)n Simple_repeat Simple_repeat 2 32 0 2066 128 0 13 chr4 36340737 36341042 -165987305 - AluSx SINE Alu -11 301 1 30 27 0 0 chr4 36341050 36341087 -165987260 + AT_rich Low_complexity Low_complexity 1 37 0 664 219 16 154 chr4 36341343 36341589 -165986758 - MER20 DNA MER1_type -7 212 1 216 0 0 0 chr4 36343737 36343761 -165984586 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 279 319 43 0 chr4 36344276 36344345 -165984002 + MER45 DNA AcHobo 1 72 -106 22 0 0 0 chr4 36344517 36344539 -165983808 + AT_rich Low_complexity Low_complexity 1 22 0 476 200 44 0 chr4 36344643 36344733 -165983614 + MER58B DNA MER1_type 245 338 -3 758 232 35 142 chr4 36344877 36345385 -165982962 + MLT1C LTR MaLR 6 459 -8 294 73 0 0 chr4 36346832 36346873 -165981474 + (TG)n Simple_repeat Simple_repeat 2 42 0 2680 179 90 47 chr4 36347906 36348584 -165979763 + MER39 LTR ERV1 1 707 0 386 299 71 0 chr4 36348807 36348961 -165979386 - L1ME LINE L1 -421 5700 5536 2844 134 60 45 chr4 36348962 36349565 -165978782 - MER4B LTR ERV1 0 779 1 568 178 222 0 chr4 36349615 36349750 -165978597 + MER34C LTR ERV1 30 194 -391 1767 161 45 25 chr4 36349777 36350132 -165978215 - THE1C LTR MaLR 0 375 14 3103 155 49 0 chr4 36350135 36350702 -165977645 + LTR49 LTR ERV1 1 595 0 417 205 80 9 chr4 36350751 36350863 -165977484 + LTR48 LTR ERV1 356 475 -312 307 227 101 17 chr4 36350904 36351023 -165977324 + LTR48 LTR ERV1 609 737 -50 1740 179 45 6 chr4 36351194 36351524 -165976823 + MER61A LTR ERV1 1 343 0 1638 186 3 0 chr4 36351562 36351852 -165976495 + AluJo SINE Alu 10 300 -12 553 293 66 0 chr4 36351939 36352106 -165976241 - MER67D LTR ERV1 -8 506 329 1294 223 6 61 chr4 36352182 36352509 -165975838 - MER67D LTR ERV1 -203 311 3 3763 98 11 5 chr4 36352542 36353093 -165975254 + MER41A LTR ERV1 1 554 0 1906 142 17 53 chr4 36355308 36355611 -165972736 + MER7A DNA MER2_type 2 314 -2724 2329 56 0 7 chr4 36355611 36355968 -165972379 - AluY SINE Alu 0 355 1 1593 85 0 0 chr4 36355972 36356173 -165972174 - AluSc SINE Alu -16 293 93 1906 142 17 53 chr4 36356173 36356222 -165972125 + MER7A DNA MER2_type 317 345 -1 412 209 51 70 chr4 36356869 36357027 -165971320 - MER106B DNA MER1_type -1 1058 904 273 212 15 0 chr4 36358213 36358279 -165970068 + (TGAA)n Simple_repeat Simple_repeat 3 69 0 235 95 14 54 chr4 36360609 36360683 -165967664 + (TA)n Simple_repeat Simple_repeat 1 71 0 343 263 131 31 chr4 36363868 36364127 -165964220 - L1ME1 LINE L1 -12 6152 5865 2404 70 0 19 chr4 36364339 36364655 -165963692 + AluY SINE Alu 1 310 -1 1768 160 0 0 chr4 36365490 36365771 -165962576 - AluY SINE Alu -30 281 1 381 292 96 47 chr4 36365775 36366138 -165962209 + L1MC/D LINE L1 5390 5770 -2038 21 0 0 0 chr4 36366987 36367008 -165961339 + AT_rich Low_complexity Low_complexity 1 21 0 36 77 0 0 chr4 36367841 36367919 -165960428 + AT_rich Low_complexity Low_complexity 1 78 0 2191 93 3 10 chr4 36368236 36368560 -165959787 - AluY SINE Alu 0 311 1 25 31 0 0 chr4 36368949 36368981 -165959366 + AT_rich Low_complexity Low_complexity 1 32 0 2274 102 0 3 chr4 36370430 36370733 -165957614 - AluSg SINE Alu -8 302 1 246 62 0 0 chr4 36371112 36371144 -165957203 + (T)n Simple_repeat Simple_repeat 1 32 0 347 263 144 57 chr4 36371924 36372118 -165956229 - MIR SINE MIR 0 262 52 190 400 0 12 chr4 36372253 36372333 -165956014 + L2 LINE L2 2980 3058 -214 232 330 19 0 chr4 36373052 36373155 -165955192 + (TA)n Simple_repeat Simple_repeat 2 106 0 6201 227 23 23 chr4 36373969 36375062 -165953285 - L1 LINE L1 -886 5260 4168 1944 115 10 0 chr4 36375062 36375358 -165952989 - L1PA8 LINE L1 -6 6166 5868 1982 103 0 0 chr4 36375360 36375631 -165952716 - AluY SINE Alu -2 309 39 6201 227 23 23 chr4 36375631 36376158 -165952189 - L1 LINE L1 -1978 4168 3637 4815 151 47 9 chr4 36376159 36376391 -165951956 + L1PA16 LINE L1 5254 5476 -690 203 0 37 0 chr4 36376391 36376418 -165951929 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 4815 151 47 9 chr4 36376418 36377060 -165951287 + L1PA16 LINE L1 5476 6161 -5 358 202 71 30 chr4 36377818 36377917 -165950430 - MER58B DNA MER1_type 0 341 239 207 91 45 23 chr4 36377962 36378006 -165950341 + T-rich Low_complexity Low_complexity 2 46 0 2042 84 0 0 chr4 36378097 36378359 -165949988 + AluY SINE Alu 35 296 -15 23 86 0 0 chr4 36381237 36381295 -165947052 + AT_rich Low_complexity Low_complexity 1 58 0 223 299 0 0 chr4 36381542 36381629 -165946718 + A-rich Low_complexity Low_complexity 1 87 0 346 329 48 0 chr4 36381862 36382008 -165946339 - HERV16 LTR ERVL -2329 2667 2515 24 0 0 0 chr4 36382440 36382464 -165945883 + AT_rich Low_complexity Low_complexity 1 24 0 6533 76 4 61 chr4 36382957 36383931 -165944416 - L1PA7 LINE L1 0 6154 5187 789 343 67 29 chr4 36384585 36385409 -165942938 - HERV16 LTR ERVL -2984 2012 1095 668 352 38 16 chr4 36386246 36386561 -165941786 - LTR16B LTR ERVL -142 322 1 6660 67 18 0 chr4 36387930 36388885 -165939462 - L1PA7 LINE L1 -6 6148 5183 1705 169 145 16 chr4 36390293 36390672 -165937675 + MSTA LTR MaLR 1 428 0 290 296 14 42 chr4 36390805 36390947 -165937400 - LTR67 LTR ERVL -2 555 418 2296 84 0 0 chr4 36391241 36391559 -165936788 + AluY SINE Alu 1 311 0 2908 260 54 37 chr4 36391691 36392863 -165935484 + L1MCb LINE L1 41 1245 -4857 434 260 58 7 chr4 36392877 36393031 -165935316 + L1MCb LINE L1 1226 1387 -5177 2086 335 61 29 chr4 36393049 36394223 -165934124 - HERV16 LTR ERVL -3710 1286 75 625 353 64 8 chr4 36394276 36394542 -165933805 - LTR16A LTR ERVL 0 450 170 742 249 204 0 chr4 36394542 36394827 -165933520 + MER63 DNA MER1_type 567 909 -152 253 167 83 0 chr4 36395854 36395914 -165932433 + L1MA8 LINE L1 6223 6287 -4 203 171 0 0 chr4 36397465 36397500 -165930847 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 191 306 0 0 chr4 36597859 36597895 -165730452 + G-rich Low_complexity Low_complexity 1 36 0 219 366 0 0 chr4 36598136 36598177 -165730170 + G-rich Low_complexity Low_complexity 1 41 0 189 0 0 0 chr4 36598197 36598218 -165730129 + (G)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr4 36598224 36598249 -165730098 + AT_rich Low_complexity Low_complexity 1 25 0 26 118 0 0 chr4 36598249 36598283 -165730064 + GC_rich Low_complexity Low_complexity 1 34 0 216 0 0 0 chr4 36598354 36598378 -165729969 + (G)n Simple_repeat Simple_repeat 1 24 0 205 290 0 0 chr4 36598531 36598600 -165729747 + G-rich Low_complexity Low_complexity 1 69 0 273 361 13 32 chr4 36598604 36598759 -165729588 + (TGGG)n Simple_repeat Simple_repeat 3 154 0 * 324 264 17 51 chr4 36598693 36598871 -165729476 + (GGGTG)n Simple_repeat Simple_repeat 1 172 0 203 206 27 41 chr4 36598915 36598988 -165729359 + (GGGTG)n Simple_repeat Simple_repeat 2 73 0 201 267 7 80 chr4 36599030 36599180 -165729167 + G-rich Low_complexity Low_complexity 5 143 0 552 169 0 0 chr4 36599400 36599489 -165728858 + C-rich Low_complexity Low_complexity 1 89 0 180 0 0 0 chr4 36599493 36599513 -165728834 + (A)n Simple_repeat Simple_repeat 1 20 0 29 0 0 0 chr4 36599532 36599561 -165728786 + GC_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 36599591 36599614 -165728733 + GC_rich Low_complexity Low_complexity 1 23 0 911 168 0 0 chr4 36599664 36599837 -165728510 + C-rich Low_complexity Low_complexity 1 173 0 267 259 0 0 chr4 36599901 36600040 -165728307 + C-rich Low_complexity Low_complexity 1 139 0 234 0 0 0 chr4 36600503 36600529 -165727818 + (A)n Simple_repeat Simple_repeat 1 26 0 575 193 0 0 chr4 36600631 36600745 -165727602 + C-rich Low_complexity Low_complexity 1 114 0 216 0 0 0 chr4 36600745 36600769 -165727578 + (A)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr4 36600802 36600824 -165727523 + GC_rich Low_complexity Low_complexity 1 22 0 252 184 0 0 chr4 36600966 36601015 -165727332 + C-rich Low_complexity Low_complexity 1 49 0 523 254 0 12 chr4 36601050 36601399 -165726948 + C-rich Low_complexity Low_complexity 1 344 0 624 129 0 0 chr4 36602013 36602114 -165726233 + (C)n Simple_repeat Simple_repeat 1 101 0 35 0 0 0 chr4 36602198 36602233 -165726114 + GC_rich Low_complexity Low_complexity 1 35 0 225 0 0 0 chr4 36602241 36602266 -165726081 + (C)n Simple_repeat Simple_repeat 1 25 0 186 143 0 0 chr4 36602284 36602319 -165726028 + (C)n Simple_repeat Simple_repeat 1 35 0 203 185 93 0 chr4 36602326 36602380 -165725967 + (CCCCG)n Simple_repeat Simple_repeat 1 59 0 183 264 0 0 chr4 36602401 36602492 -165725855 + C-rich Low_complexity Low_complexity 1 91 0 21 0 0 0 chr4 36603401 36603422 -165724925 + AT_rich Low_complexity Low_complexity 1 21 0 291 122 0 0 chr4 36603583 36603632 -165724715 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 56 0 0 chr4 36604886 36604922 -165723425 + AT_rich Low_complexity Low_complexity 1 36 0 478 226 9 9 chr4 36605927 36606033 -165722314 - LTR41 LTR ERVL -587 186 81 5085 22 12 0 chr4 36606197 36606792 -165721555 + L1PA4 LINE L1 5550 6151 -4 21 57 0 0 chr4 36606887 36606922 -165721425 + AT_rich Low_complexity Low_complexity 1 35 0 225 316 124 34 chr4 36608055 36608232 -165720115 - L2 LINE L2 -8 3305 3113 221 324 178 24 chr4 36608519 36608732 -165719615 + MIR SINE MIR 11 256 -6 2186 122 0 0 chr4 36609134 36609440 -165718907 + AluSq SINE Alu 1 306 0 271 250 0 23 chr4 36609915 36610003 -165718344 + (TA)n Simple_repeat Simple_repeat 2 87 0 301 328 132 23 chr4 36610074 36610248 -165718099 - L2 LINE L2 -8 3305 3113 352 340 79 17 chr4 36610252 36610493 -165717854 - L2 LINE L2 -103 3210 2955 995 142 30 52 chr4 36610700 36610932 -165717415 - MSTA LTR MaLR -201 227 1 1424 316 140 48 chr4 36610933 36612029 -165716318 - L2 LINE L2 -1014 2300 1105 27 29 0 0 chr4 36612077 36612111 -165716236 + AT_rich Low_complexity Low_complexity 1 34 0 342 240 77 34 chr4 36612125 36612333 -165716014 - L1ME LINE L1 -346 5775 5559 229 268 127 0 chr4 36612362 36612433 -165715914 + MER76 LTR ERV 578 657 -31 979 274 98 55 chr4 36613280 36613439 -165714908 + L1M4b LINE L1 12 163 -6696 2241 122 0 0 chr4 36613439 36613743 -165714604 - AluSx SINE Alu -8 304 1 979 274 98 55 chr4 36613743 36614040 -165714307 + L1M4b LINE L1 163 488 -6371 38 22 0 0 chr4 36614093 36614138 -165714209 + AT_rich Low_complexity Low_complexity 1 45 0 323 370 31 17 chr4 36614139 36614498 -165713849 + HERV16 LTR ERVL 3680 4043 -1611 680 367 6 6 chr4 36614606 36614933 -165713414 + HERV16 LTR ERVL 4184 4510 -1144 286 403 16 12 chr4 36615047 36615367 -165712980 + HERV16 LTR ERVL 4696 5016 -748 1794 248 26 12 chr4 36615465 36615885 -165712462 + MSTB LTR MaLR 1 426 0 664 341 52 6 chr4 36616344 36616669 -165711678 + LTR16A LTR ERVL 96 435 -15 595 305 60 0 chr4 36616675 36616908 -165711439 + MER70A LTR ERVL 4 250 -222 418 147 13 0 chr4 36616906 36616981 -165711366 + MSTB2 LTR MaLR 380 455 -2 * 285 313 42 28 chr4 36618289 36618433 -165709914 - MIR SINE MIR -96 166 21 213 307 9 35 chr4 36618491 36618605 -165709742 + GA-rich Low_complexity Low_complexity 1 111 0 198 275 192 33 chr4 36619005 36619125 -165709222 - L3 LINE CR1 -275 1302 1164 1783 253 54 15 chr4 36619484 36620006 -165708341 + MLT1F LTR MaLR 1 542 0 281 274 77 60 chr4 36620075 36620192 -165708155 + HERV16 LTR ERVL 1251 1369 -3627 628 37 0 25 chr4 36620351 36620456 -165707891 - AluY SINE Alu 0 307 205 180 125 0 0 chr4 36620555 36620587 -165707760 + (A)n Simple_repeat Simple_repeat 1 32 0 197 0 0 67 chr4 36620676 36620706 -165707641 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 2537 50 0 0 chr4 36620719 36621019 -165707328 - AluY SINE Alu -11 300 1 1717 164 7 10 chr4 36621065 36621076 -165707271 - AluJo SINE Alu -14 298 288 744 9 26 26 chr4 36621076 36621192 -165707155 + (TTATA)n Simple_repeat Simple_repeat 4 119 0 1717 164 7 10 chr4 36621192 36621479 -165706868 - AluJo SINE Alu -24 288 1 418 331 34 0 chr4 36621630 36621805 -165706542 + HERV16 LTR ERVL 2118 2298 -2698 23 78 0 0 chr4 36622280 36622331 -165706016 + AT_rich Low_complexity Low_complexity 1 51 0 23 105 0 0 chr4 36625540 36625626 -165702721 + AT_rich Low_complexity Low_complexity 1 86 0 1310 121 0 0 chr4 36626217 36626391 -165701956 + AluSg/x SINE Alu 137 310 -2 451 182 11 0 chr4 36626397 36626485 -165701862 - MER2 DNA MER2_type -190 155 67 18371 170 54 6 chr4 36627528 36630645 -165697702 + L1MA3 LINE L1 11 3366 -4199 191 88 29 0 chr4 36630645 36630679 -165697668 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 18371 170 54 6 chr4 36630679 36631554 -165696793 + L1MA3 LINE L1 3366 4197 -3368 3449 239 105 15 chr4 36631557 36632538 -165695809 + L1PA12 LINE L1 7 1075 -6506 1319 200 0 4 chr4 36632533 36632773 -165695574 - L1PA12 LINE L1 -6010 1571 1333 * 1147 94 0 0 chr4 36632788 36632958 -165695389 + L1PA11 LINE L1 5642 5811 -357 2145 112 18 60 chr4 36633058 36633442 -165694905 + L1PA11 LINE L1 5804 6171 -3 10322 187 26 10 chr4 36633443 36635579 -165692768 + L1MA3 LINE L1 4185 6402 -1322 2206 156 52 42 chr4 36635579 36636003 -165692344 + MSTA LTR MaLR 1 428 0 10322 187 26 10 chr4 36636003 36637348 -165690999 + L1MA3 LINE L1 6402 7724 0 1920 220 62 48 chr4 36637571 36638117 -165690230 - MLT2B3 LTR ERVL 0 554 1 21 0 0 0 chr4 36638129 36638150 -165690197 + AT_rich Low_complexity Low_complexity 1 21 0 270 306 60 45 chr4 36639738 36639872 -165688475 - MIR SINE MIR -120 142 7 216 0 0 0 chr4 36639992 36640016 -165688331 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2243 83 3 0 chr4 36640019 36640320 -165688027 + AluY SINE Alu 1 302 -9 2127 104 3 0 chr4 36640364 36640690 -165687657 - pTR5 LTR ERV1 -2046 392 66 281 235 31 20 chr4 36640690 36640788 -165687559 - LTR30 LTR ERV1 -80 642 544 3063 145 53 52 chr4 36640791 36641636 -165686711 - pTR5 LTR ERV1 -417 2021 741 235 226 38 0 chr4 36641671 36641724 -165686623 + (CATATA)n Simple_repeat Simple_repeat 2 56 0 3822 184 34 7 chr4 36641727 36643116 -165685231 - L1P5 LINE L1 -381 5775 4345 9286 153 12 31 chr4 36643121 36644172 -165684175 + Tigger1 DNA MER2_type 672 1677 -741 2164 117 7 0 chr4 36644172 36644470 -165683877 - AluSx SINE Alu -12 300 1 9286 153 12 31 chr4 36644470 36645199 -165683148 + Tigger1 DNA MER2_type 1677 2418 0 2210 126 0 0 chr4 36645750 36646051 -165682296 - AluSx SINE Alu -11 301 1 24 53 0 0 chr4 36646730 36646768 -165681579 + AT_rich Low_complexity Low_complexity 1 38 0 618 347 12 4 chr4 36646785 36647027 -165681320 - MIR SINE MIR -10 252 9 2060 165 22 3 chr4 36647131 36647488 -165680859 - THE1B LTR MaLR 0 364 1 1559 108 0 0 chr4 36648080 36648284 -165680063 + AluSg/x SINE Alu 94 297 -13 180 0 0 0 chr4 36650362 36650382 -165677965 + (TG)n Simple_repeat Simple_repeat 2 21 0 203 188 21 0 chr4 36650398 36650446 -165677901 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 1781 172 68 8 chr4 36650700 36651054 -165677293 + THE1C LTR MaLR 1 375 0 536 270 50 35 chr4 36651629 36651829 -165676518 - MER3 DNA MER1_type 0 209 7 23 33 0 0 chr4 36652212 36652242 -165676105 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr4 36652552 36652576 -165675771 + AT_rich Low_complexity Low_complexity 1 24 0 300 286 50 34 chr4 36652605 36652724 -165675623 - MIR SINE MIR -26 236 116 240 314 0 0 chr4 36653233 36653284 -165675063 - MER91 DNA MER1_type -12 128 78 204 260 13 13 chr4 36653840 36653917 -165674430 + A-rich Low_complexity Low_complexity 3 79 0 508 354 23 9 chr4 36654949 36655164 -165673183 + MIR SINE MIR 5 222 -40 1312 271 49 22 chr4 36657224 36657674 -165670673 - MLT1C LTR MaLR 0 467 6 182 37 37 0 chr4 36657820 36657847 -165670500 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 1676 152 22 14 chr4 36657847 36658123 -165670224 - AluSx SINE Alu -32 280 3 1272 210 13 46 chr4 36658129 36658434 -165669913 - AluJo SINE Alu -7 305 11 232 231 74 83 chr4 36658523 36658631 -165669716 + MIR SINE MIR 137 243 -19 2343 18 88 0 chr4 36659126 36659409 -165668938 - AluYa5 SINE Alu -3 308 1 22 0 0 0 chr4 36659948 36659970 -165668377 + AT_rich Low_complexity Low_complexity 1 22 0 268 361 62 0 chr4 36660151 36660281 -165668066 + L2 LINE L2 3134 3271 -1 26 30 0 0 chr4 36661674 36661707 -165666640 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4 36662120 36662148 -165666199 + AT_rich Low_complexity Low_complexity 1 28 0 182 355 63 37 chr4 36662401 36662590 -165665757 - MIR SINE MIR -46 216 23 4268 159 13 6 chr4 36662611 36663317 -165665030 - MER50 LTR ERV1 -23 711 1 2510 118 27 0 chr4 36663318 36663691 -165664656 - MER50-int LTR ERV1 -8 7197 6815 * 12109 160 35 22 chr4 36663680 36665936 -165662411 - MER50-int LTR ERV1 -994 6211 3928 3173 242 14 33 chr4 36665958 36666746 -165661601 - MER50-int LTR ERV1 -3627 3578 2806 2608 58 11 25 chr4 36666750 36667109 -165661238 - L1PA5 LINE L1 0 6154 5801 3983 156 22 35 chr4 36667134 36668296 -165660051 - MER50-int LTR ERV1 -5355 1850 624 2986 181 4 14 chr4 36668283 36668791 -165659556 - MER50-int LTR ERV1 -6702 503 1 * 1825 185 0 33 chr4 36668798 36668938 -165659409 - MER50 LTR ERV1 -29 705 562 2318 87 0 7 chr4 36668938 36669237 -165659110 + AluSc SINE Alu 1 297 -12 1825 185 0 33 chr4 36669237 36669426 -165658921 - MER50 LTR ERV1 -172 562 387 1735 184 40 17 chr4 36669526 36669701 -165658646 - MER50 LTR ERV1 -378 356 187 2086 128 3 0 chr4 36669701 36670005 -165658342 - AluSp SINE Alu -8 305 1 1735 184 40 17 chr4 36670005 36670177 -165658170 - MER50 LTR ERV1 -547 187 1 2117 117 7 3 chr4 36670597 36670897 -165657450 + AluSx SINE Alu 1 301 -11 21 36 0 0 chr4 36672010 36672038 -165656309 + AT_rich Low_complexity Low_complexity 1 28 0 23 86 0 0 chr4 36672269 36672327 -165656020 + AT_rich Low_complexity Low_complexity 1 58 0 862 222 39 5 chr4 36673362 36673565 -165654782 + L1ME1 LINE L1 5516 5725 -441 708 264 42 73 chr4 36673685 36674171 -165654176 + L1ME1 LINE L1 5711 6334 0 207 175 0 0 chr4 36674348 36674388 -165653959 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 510 361 77 28 chr4 36675211 36675638 -165652709 + LTR16A LTR ERVL 1 448 -2 401 314 43 19 chr4 36675832 36676039 -165652308 - ERVL LTR ERVL -4724 1040 829 2168 156 8 19 chr4 36676512 36676891 -165651456 - THE1C LTR MaLR 0 375 1 254 50 25 0 chr4 36677304 36677344 -165651003 + (TG)n Simple_repeat Simple_repeat 2 42 0 23 33 0 0 chr4 36678673 36678703 -165649644 + AT_rich Low_complexity Low_complexity 1 30 0 186 292 92 87 chr4 36679240 36679425 -165648922 - MIR SINE MIR -8 254 69 252 247 35 0 chr4 36679517 36679602 -165648745 + (TA)n Simple_repeat Simple_repeat 2 89 0 718 229 73 124 chr4 36679801 36680333 -165648014 - MLT1D LTR MaLR 0 505 1 527 284 82 65 chr4 36680909 36681482 -165646865 + HAL1b LINE L1 61 643 -705 180 0 0 0 chr4 36681632 36681652 -165646695 + (GAGAA)n Simple_repeat Simple_repeat 3 22 0 2186 89 3 3 chr4 36684176 36684478 -165643869 - AluY SINE Alu -9 302 1 21 36 0 0 chr4 36684884 36684912 -165643435 + AT_rich Low_complexity Low_complexity 1 28 0 243 150 12 100 chr4 36685174 36685254 -165643093 + L1ME2 LINE L1 5952 6024 -140 241 288 27 0 chr4 36687385 36687458 -165640889 + MLT1J2 LTR MaLR 66 140 -310 1899 95 0 8 chr4 36687776 36688039 -165640308 + AluSc SINE Alu 1 261 -48 213 132 0 0 chr4 36688043 36688081 -165640266 + (TGGGGG)n Simple_repeat Simple_repeat 4 41 0 3099 193 66 19 chr4 36689187 36689881 -165638466 + LTR8A LTR ERV1 1 727 0 225 160 0 20 chr4 36690585 36690635 -165637712 - L1MC4 LINE L1 -1342 6700 6652 649 273 128 21 chr4 36690722 36691004 -165637343 - L1MA9 LINE L1 -38 6274 5963 540 90 13 0 chr4 36692254 36692332 -165636015 - MADE1 DNA Mariner 0 80 2 357 43 0 0 chr4 36692544 36692591 -165635756 + (CA)n Simple_repeat Simple_repeat 2 48 0 29 0 0 0 chr4 36693753 36693782 -165634565 + AT_rich Low_complexity Low_complexity 1 29 0 25 65 0 0 chr4 36694000 36694046 -165634301 + AT_rich Low_complexity Low_complexity 1 46 0 221 254 15 15 chr4 36694179 36694246 -165634101 + (TATG)n Simple_repeat Simple_repeat 4 70 0 2024 140 0 0 chr4 36694702 36694994 -165633353 - AluSx SINE Alu -20 292 1 30 45 0 0 chr4 36695500 36695544 -165632803 + AT_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr4 36696032 36696067 -165632280 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr4 36696482 36696509 -165631838 + AT_rich Low_complexity Low_complexity 1 27 0 269 351 58 40 chr4 36698701 36698875 -165629472 - L2 LINE L2 -213 3059 2883 3617 208 24 61 chr4 36698970 36700843 -165627504 + L1MB4 LINE L1 4386 6170 -10 225 0 0 0 chr4 36701101 36701126 -165627221 + (CA)n Simple_repeat Simple_repeat 2 26 0 2024 199 81 11 chr4 36702058 36702530 -165625817 - MLT1D LTR MaLR 0 505 1 22 35 0 0 chr4 36702539 36702568 -165625779 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 36702961 36702989 -165625358 + AT_rich Low_complexity Low_complexity 1 28 0 436 267 20 48 chr4 36703720 36703866 -165624481 + L2 LINE L2 3172 3313 0 409 299 91 83 chr4 36703855 36704506 -165623841 - L2 LINE L2 -12 3301 2648 * 340 266 0 43 chr4 36704708 36704802 -165623545 - Tigger7 DNA MER2_type -8 2479 2390 1222 246 20 0 chr4 36704803 36705055 -165623292 - Tigger7 DNA MER2_type -2222 265 9 28 48 0 0 chr4 36705068 36705110 -165623237 + AT_rich Low_complexity Low_complexity 1 42 0 27 29 0 0 chr4 36705516 36705550 -165622797 + AT_rich Low_complexity Low_complexity 1 34 0 657 144 0 0 chr4 36706681 36706792 -165621555 - AluSp/q SINE Alu -4 309 199 41 66 0 0 chr4 36707443 36707519 -165620828 + AT_rich Low_complexity Low_complexity 1 76 0 22 35 0 0 chr4 36707626 36707655 -165620692 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr4 36708000 36708036 -165620311 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr4 36710354 36710397 -165617950 + AT_rich Low_complexity Low_complexity 1 43 0 2064 160 12 9 chr4 36710753 36711091 -165617256 - MER1B DNA MER1_type 0 339 1 266 321 0 0 chr4 36711171 36711255 -165617092 + MIR3 SINE MIR 115 198 -10 306 333 44 33 chr4 36711806 36711989 -165616358 + L1ME3A LINE L1 5763 5947 -223 352 185 147 27 chr4 36712624 36712808 -165615539 - MER20B DNA MER1_type -74 709 504 24 67 0 0 chr4 36713478 36713523 -165614824 + AT_rich Low_complexity Low_complexity 1 45 0 269 335 92 18 chr4 36713782 36713946 -165614401 - MER20B DNA MER1_type -607 176 1 265 172 47 31 chr4 36714304 36714368 -165613979 + MLT1E2 LTR MaLR 19 83 -543 493 240 41 0 chr4 36714377 36714498 -165613849 + MLT1D LTR MaLR 379 504 -1 11125 228 23 11 chr4 36714566 36717336 -165611011 - L1P LINE L1 -1908 4238 1437 1319 249 0 4 chr4 36717359 36717640 -165610707 - L1PA13 LINE L1 -6507 280 1 428 345 79 11 chr4 36717661 36717928 -165610419 + L2 LINE L2 1733 2017 -1297 244 328 77 46 chr4 36717933 36718192 -165610155 - LTR16C LTR ERVL -1 490 224 511 326 69 67 chr4 36718394 36718870 -165609477 + L2 LINE L2 2017 2493 -821 278 286 36 50 chr4 36720346 36720486 -165607861 + MIR SINE MIR 74 211 -51 22 0 0 0 chr4 36720560 36720582 -165607765 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr4 36720648 36720684 -165607663 + AT_rich Low_complexity Low_complexity 1 36 0 21 82 0 0 chr4 36720715 36720764 -165607583 + AT_rich Low_complexity Low_complexity 1 49 0 250 280 65 36 chr4 36720764 36720861 -165607486 - L1MC4a LINE L1 -1882 5926 5820 351 44 0 0 chr4 36720861 36720906 -165607441 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 250 280 65 36 chr4 36720906 36720976 -165607371 - L1MC4a LINE L1 -1988 5820 5754 263 274 35 0 chr4 36721109 36721222 -165607125 - L1MC4a LINE L1 -2320 5488 5372 428 311 0 25 chr4 36721275 36721397 -165606950 - L2 LINE L2 0 3313 3195 2029 121 0 4 chr4 36721647 36721956 -165606391 + AluY SINE Alu 1 308 0 1386 345 26 24 chr4 36722213 36722969 -165605378 + ERVL LTR ERVL 2426 3183 -2581 555 275 137 20 chr4 36723205 36723565 -165604782 + MLT2F LTR ERVL 3 466 -197 331 249 17 17 chr4 36723633 36723810 -165604537 + (CATATA)n Simple_repeat Simple_repeat 4 180 0 979 334 85 20 chr4 36724005 36724566 -165603781 + L2 LINE L2 2699 3313 0 752 243 157 24 chr4 36726411 36726749 -165601598 + L1ME1 LINE L1 5647 6029 -137 21 36 0 0 chr4 36727445 36727473 -165600874 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr4 36727622 36727665 -165600682 + AT_rich Low_complexity Low_complexity 1 43 0 2043 99 16 7 chr4 36729489 36729793 -165598554 + L1PA8 LINE L1 5864 6170 -2 246 333 0 0 chr4 36729813 36729897 -165598450 + (TG)n Simple_repeat Simple_repeat 1 84 0 22 35 0 0 chr4 36730126 36730155 -165598192 + AT_rich Low_complexity Low_complexity 1 29 0 429 20 0 0 chr4 36731812 36731862 -165596485 + (CA)n Simple_repeat Simple_repeat 2 51 0 242 299 0 0 chr4 36732829 36732896 -165595451 + L2 LINE L2 3246 3312 -1 887 193 160 102 chr4 36732934 36733385 -165594962 - L1MC2 LINE L1 -8 6336 5860 1020 232 62 71 chr4 36733405 36733759 -165594588 - MLT1A2 LTR MaLR -23 351 1 3936 242 38 48 chr4 36733760 36735143 -165593204 - MLT1A2-int LTR MaLR -1 1370 1 286 94 41 88 chr4 36735160 36735225 -165593122 - MLT1B LTR MaLR -309 65 1 247 250 16 16 chr4 36736141 36736205 -165592142 - MLT1-int LTR MaLR -709 662 599 1630 280 73 27 chr4 36736736 36737294 -165591053 + MLT1E LTR MaLR 1 584 -9 23 0 0 0 chr4 36737716 36737739 -165590608 + AT_rich Low_complexity Low_complexity 1 23 0 256 312 136 0 chr4 36738374 36738499 -165589848 - MLT1I LTR MaLR -194 215 74 198 103 0 0 chr4 36738665 36738694 -165589653 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1410 162 15 15 chr4 36741704 36741963 -165586384 + L1PA16 LINE L1 5893 6151 -15 24 32 0 0 chr4 36742248 36742279 -165586068 + AT_rich Low_complexity Low_complexity 1 31 0 201 132 0 0 chr4 36743056 36743094 -165585253 + (GA)n Simple_repeat Simple_repeat 1 38 0 256 121 86 0 chr4 36743274 36743332 -165585015 - L1MCa LINE L1 -4499 1927 1865 685 150 53 0 chr4 36743339 36743497 -165584850 - FLAM_C SINE Alu 0 164 1 2543 154 18 11 chr4 36744582 36745031 -165583316 - Tigger2 DNA MER2_type 0 2718 2267 316 169 34 0 chr4 36745019 36745078 -165583269 - Tigger2 DNA MER2_type -2653 65 5 * 1220 131 10 0 chr4 36745338 36745537 -165582810 - L1PA13 LINE L1 -4 6159 5959 21 0 0 0 chr4 36745858 36745879 -165582468 + AT_rich Low_complexity Low_complexity 1 21 0 1868 146 67 17 chr4 36745929 36746286 -165582061 - THE1C LTR MaLR 0 375 1 198 0 0 0 chr4 36746294 36746316 -165582031 + (T)n Simple_repeat Simple_repeat 1 22 0 216 340 70 10 chr4 36747675 36747775 -165580572 - L2 LINE L2 0 3313 3208 1163 322 83 30 chr4 36748523 36749348 -165578999 + L2 LINE L2 2449 3312 -1 3944 37 2 0 chr4 36749545 36750028 -165578319 - L1P LINE L1 -1821 4325 3842 * 4790 42 0 0 chr4 36750017 36750595 -165577752 + L1PA4 LINE L1 5578 6155 0 22 56 0 0 chr4 36752636 36752672 -165575675 + AT_rich Low_complexity Low_complexity 1 36 0 471 335 66 0 chr4 36753334 36753501 -165574846 + MIR SINE MIR 41 218 -44 881 264 5 5 chr4 36753755 36753956 -165574391 + Tigger3b DNA MER2_type 5 205 -1026 4584 155 61 7 chr4 36753958 36754808 -165573539 + Tigger3b DNA MER2_type 336 1231 0 1519 97 10 0 chr4 36755198 36755405 -165572942 + PABL_A LTR ERV1 452 660 0 182 341 35 12 chr4 36755711 36755796 -165572551 + MER5A DNA MER1_type 82 168 -21 39 0 0 0 chr4 36755976 36756015 -165572332 + AT_rich Low_complexity Low_complexity 1 39 0 3789 226 46 11 chr4 36756038 36756863 -165571484 + MER21B LTR ERV1 2 855 -8 3182 141 87 8 chr4 36756986 36757574 -165570773 + LTR24C LTR ERV1 2 635 0 2954 100 19 1 chr4 36757608 36758171 -165570176 + PABL_A LTR ERV1 1 658 -2 244 297 8 17 chr4 36758578 36758696 -165569651 + (TA)n Simple_repeat Simple_repeat 2 118 0 40 87 0 0 chr4 36758815 36758918 -165569429 + AT_rich Low_complexity Low_complexity 1 103 0 2604 113 0 0 chr4 36759300 36759664 -165568683 - THE1B LTR MaLR 0 364 1 5223 119 19 42 chr4 36759664 36760530 -165567817 + L1PA14 LINE L1 5307 6152 -9 1106 240 24 17 chr4 36760540 36760832 -165567515 + L1MC3 LINE L1 7262 7555 -230 22 35 0 0 chr4 36760841 36760870 -165567477 + AT_rich Low_complexity Low_complexity 1 29 0 846 184 17 11 chr4 36760870 36761049 -165567298 - L1MA9 LINE L1 -215 6097 5918 632 159 63 16 chr4 36761049 36761170 -165567177 + L1MA9 LINE L1 6179 6310 -2 439 238 60 9 chr4 36761171 36761329 -165567018 + L1MD3 LINE L1 7616 7995 0 1760 136 21 17 chr4 36761679 36761966 -165566381 + AluSg SINE Alu 1 288 -22 1428 171 6 104 chr4 36762408 36762736 -165565611 - AluJb SINE Alu -16 296 1 684 284 38 21 chr4 36763031 36763270 -165565077 + MLT1F1 LTR MaLR 323 565 -2 230 300 22 22 chr4 36763273 36763363 -165564984 + MLT1F1-int LTR MaLR 2 91 -1280 263 234 26 13 chr4 36763452 36763529 -165564818 + MLT1F1-int LTR MaLR 290 367 -1004 1876 190 16 18 chr4 36763568 36763952 -165564395 + MLT1B LTR MaLR 8 390 0 564 255 0 70 chr4 36763982 36764082 -165564265 + MLT1F1-int LTR MaLR 428 509 -862 2080 128 3 10 chr4 36764082 36764395 -165563952 + AluSp SINE Alu 1 311 -2 564 255 0 70 chr4 36764395 36764494 -165563853 + MLT1F1-int LTR MaLR 509 613 -758 1026 279 3 35 chr4 36764638 36764921 -165563426 + MLT1E LTR MaLR 283 556 -37 254 235 78 78 chr4 36765322 36765424 -165562923 + MIR SINE MIR 115 216 -46 394 293 47 33 chr4 36767206 36767356 -165560991 - MIR SINE MIR -110 152 1 239 262 0 0 chr4 36767372 36767433 -165560914 + (TA)n Simple_repeat Simple_repeat 2 62 0 24 67 0 0 chr4 36768024 36768069 -165560278 + AT_rich Low_complexity Low_complexity 1 45 0 831 298 20 24 chr4 36768101 36768356 -165559991 + MIR SINE MIR 2 255 -7 1187 271 92 28 chr4 36769722 36770157 -165558190 - MLT1E LTR MaLR 0 593 131 378 316 72 0 chr4 36770235 36770374 -165557973 - Charlie8 DNA MER1_type -2155 262 114 1544 210 41 30 chr4 36770598 36770625 -165557722 - MLT1A2 LTR MaLR 0 374 349 1820 157 46 38 chr4 36770625 36770995 -165557352 + THE1C LTR MaLR 1 373 -2 1544 210 41 30 chr4 36770995 36771333 -165557014 - MLT1A2 LTR MaLR -25 349 5 664 292 90 22 chr4 36771427 36771694 -165556653 + MER58 DNA MER1_type 2 2365 -55 21 0 0 0 chr4 36772273 36772294 -165556053 + AT_rich Low_complexity Low_complexity 1 21 0 237 139 0 0 chr4 36772658 36772701 -165555646 + (CA)n Simple_repeat Simple_repeat 2 44 0 703 241 183 32 chr4 36772884 36772931 -165555416 + L1ME2 LINE L1 5740 5779 -385 1268 177 157 26 chr4 36772931 36773281 -165555066 - MSTD LTR MaLR 0 396 1 703 241 183 32 chr4 36773281 36773578 -165554769 + L1ME2 LINE L1 5779 6136 -28 21 82 0 0 chr4 36773696 36773745 -165554602 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 36774187 36774208 -165554139 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr4 36774444 36774484 -165553863 + AT_rich Low_complexity Low_complexity 1 40 0 460 316 26 28 chr4 36775660 36775845 -165552502 + MIR3 SINE MIR 5 189 -19 595 244 0 0 chr4 36778211 36778330 -165550017 + FLAM_A SINE Alu 2 120 -13 6792 69 9 7 chr4 36780134 36781413 -165546934 + L1PA8 LINE L1 4892 6172 0 219 158 0 0 chr4 36781784 36781822 -165546525 + T-rich Low_complexity Low_complexity 1 38 0 6604 53 2 2 chr4 36781825 36782650 -165545697 - L1PA5 LINE L1 -2 6152 5328 1438 52 0 76 chr4 36784396 36784607 -165543740 + AluY SINE Alu 104 298 -13 980 238 268 37 chr4 36785099 36785270 -165543077 - LTR50 LTR ERVL -6 789 659 2175 78 3 0 chr4 36785270 36785606 -165542741 - AluSp SINE Alu 0 337 1 980 238 268 37 chr4 36785606 36786060 -165542287 - LTR50 LTR ERVL -136 659 18 2158 117 13 0 chr4 36786330 36786639 -165541708 - AluSp SINE Alu 0 313 1 22 35 0 0 chr4 36787802 36787831 -165540516 + AT_rich Low_complexity Low_complexity 1 29 0 3248 115 2 0 chr4 36788540 36788992 -165539355 - MLT2A2 LTR ERVL 0 453 1 323 254 32 0 chr4 36790114 36790240 -165538107 + Charlie5 DNA MER1_type 2495 2624 0 261 200 0 0 chr4 36790328 36790383 -165537964 + Charlie5 DNA MER1_type 2553 2607 -5 524 215 6 89 chr4 36790401 36790559 -165537788 - MLT1D LTR MaLR -360 145 1 1142 151 16 0 chr4 36791391 36791577 -165536770 - Tigger7 DNA MER2_type -1 2486 2298 501 227 149 0 chr4 36791583 36791724 -165536623 - Tigger7 DNA MER2_type -260 290 129 405 250 86 36 chr4 36792022 36792162 -165536185 - MIR SINE MIR 0 262 116 2246 123 0 0 chr4 36792704 36793013 -165535334 + AluSc SINE Alu 1 309 0 37 39 0 0 chr4 36793207 36793258 -165535089 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr4 36793451 36793472 -165534875 + AT_rich Low_complexity Low_complexity 1 21 0 32 57 0 0 chr4 36793906 36793959 -165534388 + AT_rich Low_complexity Low_complexity 1 53 0 239 309 0 0 chr4 36794060 36794115 -165534232 + MIR SINE MIR 3 57 -205 3005 208 131 3 chr4 36794132 36794187 -165534160 + L1MB3 LINE L1 5375 5422 -761 351 0 0 0 chr4 36794187 36794226 -165534121 + (CA)n Simple_repeat Simple_repeat 1 39 0 3005 208 131 3 chr4 36794226 36794878 -165533469 + L1MB3 LINE L1 5422 6173 -10 323 338 28 0 chr4 36794913 36795058 -165533289 + MIR SINE MIR 72 220 -42 23 54 0 0 chr4 36795229 36795266 -165533081 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr4 36795758 36795781 -165532566 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 397 76 30 0 chr4 36795780 36795846 -165532501 + (TG)n Simple_repeat Simple_repeat 1 68 0 259 182 50 20 chr4 36796239 36796338 -165532009 + (TA)n Simple_repeat Simple_repeat 1 102 0 1482 160 56 21 chr4 36796487 36796775 -165531572 - AluJo SINE Alu -14 298 1 183 100 0 0 chr4 36797827 36797857 -165530490 + (CTG)n Simple_repeat Simple_repeat 1 30 0 183 80 0 0 chr4 36798435 36798460 -165529887 + (GA)n Simple_repeat Simple_repeat 2 26 0 181 229 29 71 chr4 36800251 36800321 -165528026 - L2 LINE L2 0 3313 3247 2045 142 3 0 chr4 36800410 36800712 -165527635 + AluSq SINE Alu 1 303 -10 4661 144 18 30 chr4 36801163 36802003 -165526344 - L1MA3 LINE L1 -10 6295 5466 1408 168 20 64 chr4 36802575 36802872 -165525475 + AluJb SINE Alu 6 289 -23 24 0 0 0 chr4 36802881 36802905 -165525442 + AT_rich Low_complexity Low_complexity 1 24 0 2032 156 24 14 chr4 36803096 36803467 -165524880 + THE1C LTR MaLR 1 375 0 7026 146 193 4 chr4 36803468 36803896 -165524451 + THE1C-int LTR MaLR 2 348 -1232 1712 125 34 4 chr4 36803896 36804160 -165524187 + AluY SINE Alu 1 272 -39 7026 146 193 4 chr4 36804160 36805056 -165523291 + THE1C-int LTR MaLR 348 1576 -4 2246 143 11 21 chr4 36805060 36805437 -165522910 + THE1C LTR MaLR 1 373 -2 26 30 0 0 chr4 36806017 36806050 -165522297 + AT_rich Low_complexity Low_complexity 1 33 0 279 0 0 0 chr4 36806075 36806106 -165522241 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 228 274 183 18 chr4 36806138 36806302 -165522045 + MIR SINE MIR 69 259 -3 270 350 60 0 chr4 36806715 36806815 -165521532 - MIR SINE MIR -155 107 2 1663 185 79 16 chr4 36806827 36807194 -165521153 - MLT1B LTR MaLR 0 390 1 291 28 0 0 chr4 36807342 36807378 -165520969 + (TA)n Simple_repeat Simple_repeat 1 36 0 1979 151 0 0 chr4 36807379 36807671 -165520676 - AluSx SINE Alu -20 292 1 4739 128 25 8 chr4 36807671 36808416 -165519931 - MER4E LTR ERV1 -21 758 1 3986 116 139 69 chr4 36809053 36810335 -165518012 - pTR5 LTR ERV1 0 2438 743 728 322 98 22 chr4 36810920 36811327 -165517020 + L2 LINE L2 2121 2558 -756 252 206 88 0 chr4 36811338 36811406 -165516941 - MER67D LTR ERV1 0 514 441 1619 200 33 0 chr4 36811439 36811744 -165516603 - MER67D LTR ERV1 -197 317 3 450 288 43 54 chr4 36811955 36812139 -165516208 + LTR50 LTR ERVL 1 182 -613 447 239 46 62 chr4 36812368 36812498 -165515849 + MLT1C LTR MaLR 10 137 -330 4840 90 11 5 chr4 36812507 36813163 -165515184 - PABL_A LTR ERV1 0 660 1 1467 152 34 75 chr4 36813163 36813519 -165514828 - MER4A LTR ERV1 -4 660 261 527 111 89 0 chr4 36813519 36813609 -165514738 - MER4A LTR ERV1 -566 98 1 352 203 31 96 chr4 36813609 36813843 -165514504 + MLT1C LTR MaLR 129 328 -139 455 214 20 0 chr4 36813844 36813942 -165514405 - LTR36 LTR ERV1 -3 608 509 3399 110 4 12 chr4 36813965 36814483 -165513864 - L1PA14 LINE L1 -3 6158 5645 402 140 14 100 chr4 36814484 36814948 -165513399 + (TA)n Simple_repeat Simple_repeat 1 423 0 694 214 0 6 chr4 36814949 36815108 -165513239 - L1P LINE L1 -1560 4586 4429 2824 172 26 4 chr4 36815109 36815616 -165512731 - LTR36 LTR ERV1 -93 518 1 2525 163 97 8 chr4 36815668 36816185 -165512162 - LTR49 LTR ERV1 -32 563 1 343 264 0 58 chr4 36816195 36816316 -165512031 + MLT1C LTR MaLR 354 467 0 1623 282 87 6 chr4 36816367 36816871 -165511476 + MLT1E2 LTR MaLR 52 596 -30 1715 118 148 172 chr4 36816871 36817578 -165510769 + LTR12 LTR ERV1 2 579 -135 455 294 118 9 chr4 36817642 36817863 -165510484 + LTR50 LTR ERVL 426 670 -125 600 200 86 0 chr4 36817865 36818005 -165510342 + LTR8 LTR ERV1 1 152 -539 755 219 0 2 chr4 36818009 36818270 -165510077 - AluJb SINE Alu 0 315 1 2253 205 28 67 chr4 36818271 36818852 -165509495 + LTR8 LTR ERV1 134 691 0 317 175 38 25 chr4 36818869 36818949 -165509398 + LTR33A LTR ERVL 436 516 -7 23 0 0 0 chr4 36820672 36820695 -165507652 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 36821394 36821415 -165506932 + AT_rich Low_complexity Low_complexity 1 21 0 1507 248 50 9 chr4 36822338 36822987 -165505360 + LTR68 LTR ERV1 1 738 -2 1226 161 124 166 chr4 36823661 36824282 -165504065 - LTR49 LTR ERV1 0 595 1 3663 229 21 5 chr4 36824362 36825212 -165503135 - L1MB8 LINE L1 0 6178 5315 3660 209 51 31 chr4 36825234 36826612 -165501735 - L1MB1 LINE L1 -1 6167 4819 2355 64 0 14 chr4 36826612 36826908 -165501439 - AluY SINE Alu -10 301 10 3660 209 51 31 chr4 36826908 36827031 -165501316 - L1MB1 LINE L1 -1349 4819 4700 2217 108 3 0 chr4 36827031 36827337 -165501010 - AluSp SINE Alu -6 307 1 3660 209 51 31 chr4 36827337 36827689 -165500658 - L1MB1 LINE L1 -1468 4700 4264 24 53 0 0 chr4 36827982 36828020 -165500327 + AT_rich Low_complexity Low_complexity 1 38 0 274 250 56 0 chr4 36828203 36828275 -165500072 - MER103 DNA DNA -85 81 6 2002 121 14 0 chr4 36828458 36828747 -165499600 + AluSx SINE Alu 5 297 -15 465 323 64 9 chr4 36829590 36829810 -165498537 + L3b LINE CR1 1207 1438 -145 563 297 8 81 chr4 36830051 36830287 -165498060 - MIR SINE MIR -30 232 14 21 0 0 0 chr4 36830412 36830433 -165497914 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr4 36830677 36830702 -165497645 + (TG)n Simple_repeat Simple_repeat 2 26 0 2056 193 8 10 chr4 36831003 36831396 -165496951 - MSTD LTR MaLR -4 392 1 21 0 0 0 chr4 36833045 36833066 -165495281 + AT_rich Low_complexity Low_complexity 1 21 0 2834 6 0 0 chr4 36833220 36833531 -165494816 - AluYa5 SINE Alu 0 311 1 22 35 0 0 chr4 36834224 36834253 -165494094 + AT_rich Low_complexity Low_complexity 1 29 0 274 327 45 51 chr4 36834497 36834653 -165493694 + L2 LINE L2 2645 2799 -515 2910 198 34 6 chr4 36835170 36835815 -165492532 + L1MCa LINE L1 710 1372 -5054 1153 185 63 20 chr4 36835852 36836106 -165492241 + L1MC1 LINE L1 6069 6333 0 300 319 96 37 chr4 36837145 36837333 -165491014 + MIR SINE MIR 14 212 -50 398 278 27 135 chr4 36837428 36837687 -165490660 - MIR SINE MIR -1 261 31 297 194 56 31 chr4 36838742 36838902 -165489445 + (TA)n Simple_repeat Simple_repeat 2 165 0 209 350 110 10 chr4 36839826 36839926 -165488421 - L2 LINE L2 -24 3289 3180 23 33 0 0 chr4 36840116 36840146 -165488201 + AT_rich Low_complexity Low_complexity 1 30 0 2651 233 62 38 chr4 36840233 36841073 -165487274 - L1ME2 LINE L1 -17 6147 5288 574 288 12 0 chr4 36841134 36841297 -165487050 - HERVL40 LTR ERVL -5343 187 23 1755 255 45 20 chr4 36841329 36841819 -165486528 - LTR40a LTR ERVL -17 502 1 213 322 17 0 chr4 36841922 36841981 -165486366 - L2 LINE L2 -3 3310 3251 1301 264 103 48 chr4 36842017 36842265 -165486082 + Zaphod DNA AcHobo 1 234 -3797 2713 94 6 0 chr4 36842265 36842627 -165485720 + THE1B LTR MaLR 1 364 0 1301 264 103 48 chr4 36842627 36843297 -165485050 + Zaphod DNA AcHobo 234 970 -3061 949 235 24 37 chr4 36843366 36843741 -165484606 + Zaphod DNA AcHobo 3662 4031 0 21 0 0 0 chr4 36845108 36845129 -165483218 + AT_rich Low_complexity Low_complexity 1 21 0 200 159 0 23 chr4 36846316 36846360 -165481987 + GA-rich Low_complexity Low_complexity 3 45 0 488 290 22 14 chr4 36847665 36847803 -165480544 - MER5B DNA MER1_type -36 142 4 209 247 68 0 chr4 36848087 36848160 -165480187 + MIR SINE MIR 124 201 -61 21 36 0 0 chr4 36848200 36848228 -165480119 + AT_rich Low_complexity Low_complexity 1 28 0 336 352 46 35 chr4 36848397 36848681 -165479666 + ERVL LTR ERVL 1506 1792 -3972 354 353 38 29 chr4 36849086 36849324 -165479023 + ERVL LTR ERVL 4072 4311 -1453 345 315 82 57 chr4 36849634 36850333 -165478014 + ERVL LTR ERVL 4748 5463 -301 1372 133 71 47 chr4 36851174 36851429 -165476918 + AluSx SINE Alu 33 293 -19 211 324 20 39 chr4 36851570 36851672 -165476675 - MIR SINE MIR -17 245 146 21 0 0 0 chr4 36851672 36851693 -165476654 + AT_rich Low_complexity Low_complexity 1 21 0 1178 251 57 0 chr4 36851899 36852266 -165476081 - L1MEc LINE L1 -4419 1977 1590 1516 252 91 29 chr4 36852317 36852737 -165475610 + MER77 LTR ERV1 54 513 -92 210 71 0 0 chr4 36852737 36852765 -165475582 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1516 252 91 29 chr4 36852765 36852863 -165475484 + MER77 LTR ERV1 513 604 -1 1940 275 103 45 chr4 36853054 36853689 -165474658 - L1MEc LINE L1 -4994 1402 805 1899 162 0 16 chr4 36853689 36853998 -165474349 - AluJo SINE Alu -8 304 1 1940 275 103 45 chr4 36853998 36854071 -165474276 - L1MEc LINE L1 -5591 805 738 2088 105 7 0 chr4 36854071 36854357 -165473990 - AluSp SINE Alu -23 290 3 1940 275 103 45 chr4 36854357 36854833 -165473514 - L1MEc LINE L1 -5658 738 148 25 0 0 0 chr4 36854973 36854998 -165473349 + AT_rich Low_complexity Low_complexity 1 25 0 230 329 24 12 chr4 36855021 36855106 -165473241 - MIR SINE MIR -140 122 37 22 0 0 0 chr4 36856235 36856257 -165472090 + AT_rich Low_complexity Low_complexity 1 22 0 650 25 101 0 chr4 36856257 36856415 -165471932 + (TA)n Simple_repeat Simple_repeat 1 174 0 6992 107 21 16 chr4 36856430 36857482 -165470865 - MER11C LTR ERVK -14 1057 1 31 110 0 0 chr4 36858132 36858268 -165470079 + AT_rich Low_complexity Low_complexity 1 136 0 267 307 111 13 chr4 36858445 36858598 -165469749 + MLT1G1 LTR MaLR 3 170 -425 568 159 26 0 chr4 36858825 36858938 -165469409 - L1MA9 LINE L1 0 6312 6197 1806 147 6 32 chr4 36858946 36859259 -165469088 + AluSx SINE Alu 7 311 -1 2497 224 49 54 chr4 36859317 36860145 -165468202 - L1MA8 LINE L1 -255 6036 5212 * 5192 211 77 4 chr4 36860141 36861422 -165466925 + L1MA8 LINE L1 3808 5181 -965 3564 116 13 13 chr4 36861581 36862134 -165466213 + L1PA13 LINE L1 5607 6159 -4 1471 240 81 42 chr4 36862204 36862750 -165465597 - MLT1F1 LTR MaLR 0 567 1 30 27 0 0 chr4 36863193 36863230 -165465117 + AT_rich Low_complexity Low_complexity 1 37 0 403 304 171 0 chr4 36863266 36863447 -165464900 + MIR SINE MIR 50 261 -1 302 323 21 0 chr4 36864431 36864524 -165463823 - L1MC4 LINE L1 -1334 6708 6614 231 36 0 0 chr4 36864524 36864552 -165463795 - L1PA6 LINE L1 -17 6137 6110 1199 251 76 23 chr4 36865766 36866161 -165462186 + LTR52 LTR ERVL 1 416 -5 1115 252 71 41 chr4 36866421 36867238 -165461109 + L1ME4a LINE L1 4726 5577 -585 1253 106 0 6 chr4 36867238 36867418 -165460929 + L1PA16 LINE L1 5814 5992 -174 314 289 39 10 chr4 36869111 36869215 -165459132 + L1ME4a LINE L1 6014 6120 -1 26 0 0 0 chr4 36869319 36869345 -165459002 + AT_rich Low_complexity Low_complexity 1 26 0 25 31 0 0 chr4 36869468 36869500 -165458847 + AT_rich Low_complexity Low_complexity 1 32 0 309 274 124 0 chr4 36870285 36870398 -165457949 + MIR SINE MIR 136 262 0 472 311 73 18 chr4 36871260 36871588 -165456759 + Charlie7 DNA MER1_type 349 694 -1918 2106 143 0 0 chr4 36872031 36872338 -165456009 + AluSx SINE Alu 1 307 -5 182 330 57 11 chr4 36872622 36872710 -165455637 - MIR SINE MIR -62 146 55 21 57 0 0 chr4 36872835 36872870 -165455477 + AT_rich Low_complexity Low_complexity 1 35 0 1943 134 7 0 chr4 36873022 36873314 -165455033 + AluSx SINE Alu 1 294 -18 22 35 0 0 chr4 36873482 36873511 -165454836 + AT_rich Low_complexity Low_complexity 1 29 0 809 244 46 14 chr4 36874042 36874259 -165454088 + MER58A DNA MER1_type 1 224 0 197 259 165 0 chr4 36874400 36874485 -165453862 + L3 LINE CR1 839 937 -640 739 356 56 43 chr4 36874658 36875394 -165452953 + L2 LINE L2 1706 2450 -864 557 286 185 21 chr4 36876173 36876551 -165451796 - L2 LINE L2 -22 3291 2852 272 330 0 19 chr4 36877108 36877214 -165451133 - L2 LINE L2 -700 2614 2511 1140 289 75 38 chr4 36877233 36877912 -165450435 + L2 LINE L2 2614 3313 0 181 322 110 17 chr4 36877926 36878044 -165450303 - L2 LINE L2 -815 2499 2371 22 35 0 0 chr4 36878084 36878113 -165450234 + AT_rich Low_complexity Low_complexity 1 29 0 193 167 0 0 chr4 36878882 36878912 -165449435 - L3 LINE CR1 -1119 458 429 257 324 121 43 chr4 36879268 36879799 -165448548 + L2 LINE L2 1977 2548 -766 471 344 97 41 chr4 36880440 36880702 -165447645 + L2 LINE L2 1996 2242 -1072 3082 98 11 26 chr4 36880702 36881160 -165447187 + MLT2A2 LTR ERVL 1 451 -2 471 344 97 41 chr4 36881160 36881600 -165446747 + L2 LINE L2 2242 2737 -577 1426 195 37 103 chr4 36881600 36882114 -165446233 + MLT1D LTR MaLR 21 500 -5 401 291 37 22 chr4 36882359 36882493 -165445854 + L2 LINE L2 3137 3272 0 245 257 50 69 chr4 36882852 36882953 -165445394 + L2 LINE L2 3174 3272 0 636 14 0 0 chr4 36883078 36883151 -165445196 + (TTTC)n Simple_repeat Simple_repeat 1 73 0 1191 112 0 0 chr4 36883154 36883333 -165445014 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 248 326 31 10 chr4 36884880 36884978 -165443369 - L2 LINE L2 0 3313 3214 190 286 20 20 chr4 36886235 36886284 -165442063 + MIR SINE MIR 83 131 -77 243 0 0 0 chr4 36886855 36886882 -165441465 + (A)n Simple_repeat Simple_repeat 1 27 0 31 26 0 0 chr4 36887251 36887289 -165441058 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr4 36888644 36888674 -165439673 + AT_rich Low_complexity Low_complexity 1 30 0 6158 222 36 14 chr4 36888720 36890277 -165438070 + L1 LINE L1 3324 4915 -1231 21 0 0 0 chr4 36890505 36890526 -165437821 + AT_rich Low_complexity Low_complexity 1 21 0 689 315 41 48 chr4 36890792 36891208 -165437139 + L1MCb LINE L1 1 413 -5632 655 219 39 22 chr4 36891622 36891800 -165436547 + L1MCb LINE L1 1625 1805 -4759 425 204 70 86 chr4 36891782 36891968 -165436379 + L1MB7 LINE L1 5993 6175 -9 * 631 262 190 9 chr4 36892072 36892419 -165435928 + L1MCb LINE L1 1936 2345 -4219 5310 158 39 1 chr4 36892419 36894104 -165434243 + L1PA13 LINE L1 4392 6140 -23 198 0 0 0 chr4 36894109 36894131 -165434216 + (TAAAA)n Simple_repeat Simple_repeat 5 26 0 689 214 124 4 chr4 36894131 36894377 -165433970 + L1MCb LINE L1 2333 2613 -3951 24 53 0 0 chr4 36894402 36894440 -165433907 + AT_rich Low_complexity Low_complexity 1 38 0 23 54 0 0 chr4 36894976 36895013 -165433334 + AT_rich Low_complexity Low_complexity 1 37 0 26 74 0 0 chr4 36895440 36895494 -165432853 + AT_rich Low_complexity Low_complexity 1 54 0 28 29 0 0 chr4 36895930 36895965 -165432382 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chr4 36896035 36896065 -165432282 + AT_rich Low_complexity Low_complexity 1 30 0 219 114 45 0 chr4 36896631 36896675 -165431672 + T-rich Low_complexity Low_complexity 3 48 0 5120 175 18 48 chr4 36896677 36898512 -165429835 - L1PB3 LINE L1 0 6857 5103 1601 179 0 31 chr4 36898512 36898803 -165429544 - AluSx SINE Alu -30 282 1 5120 175 18 48 chr4 36898803 36899087 -165429260 - L1PB3 LINE L1 -1754 5103 4812 28 0 0 0 chr4 36899087 36899115 -165429232 + AT_rich Low_complexity Low_complexity 1 28 0 32 26 0 0 chr4 36899216 36899255 -165429092 + AT_rich Low_complexity Low_complexity 1 39 0 36 23 0 0 chr4 36899623 36899666 -165428681 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr4 36899836 36899871 -165428476 + AT_rich Low_complexity Low_complexity 1 35 0 34 0 0 0 chr4 36901071 36901105 -165427242 + AT_rich Low_complexity Low_complexity 1 34 0 1720 219 60 25 chr4 36902902 36903350 -165424997 - MLT1C LTR MaLR -3 464 1 230 0 33 0 chr4 36903353 36903383 -165424964 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 21 36 0 0 chr4 36903429 36903457 -165424890 + AT_rich Low_complexity Low_complexity 1 28 0 476 59 0 0 chr4 36903631 36903699 -165424648 + Alu SINE Alu 243 310 0 27 0 0 0 chr4 36903738 36903765 -165424582 + AT_rich Low_complexity Low_complexity 1 27 0 2972 236 11 25 chr4 36903874 36904691 -165423656 - L1PB3 LINE L1 -2669 4180 3375 1403 160 17 42 chr4 36904691 36904979 -165423368 - AluJo SINE Alu -11 301 21 1858 221 11 7 chr4 36904989 36905423 -165422924 - L1PB3 LINE L1 -3929 2920 2485 2808 175 76 14 chr4 36905584 36906160 -165422187 - LTR9 LTR ERV1 0 612 1 309 357 160 21 chr4 36906174 36906561 -165421786 + MLT1J LTR MaLR 38 478 -33 22 56 0 0 chr4 36906637 36906673 -165421674 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 36906741 36906763 -165421584 + AT_rich Low_complexity Low_complexity 1 22 0 1883 180 24 0 chr4 36906829 36907168 -165421179 - MER7A DNA MER2_type -1 345 1 2339 157 72 52 chr4 36907176 36907693 -165420654 + L1MA9 LINE L1 5782 6308 -4 829 146 42 167 chr4 36907969 36908161 -165420186 - MSTA LTR MaLR 0 428 197 261 75 0 50 chr4 36908153 36908193 -165420154 - MSTA LTR MaLR -337 38 1 * 363 357 25 20 chr4 36908205 36908404 -165419943 - MIR SINE MIR -7 255 56 407 279 0 0 chr4 36908755 36908866 -165419481 + L1MA10 LINE L1 6217 6327 -7 198 143 0 0 chr4 36908895 36908930 -165419417 + (TA)n Simple_repeat Simple_repeat 1 35 0 2769 191 12 12 chr4 36909035 36909537 -165418810 + MLT2B2 LTR ERVL 1 502 -13 230 336 77 0 chr4 36910211 36910315 -165418032 + MLT1I LTR MaLR 59 170 -239 2323 58 3 46 chr4 36910345 36910670 -165417677 - AluY SINE Alu 0 311 1 288 221 15 0 chr4 36910759 36910827 -165417520 + MLT1I LTR MaLR 316 384 -25 22 35 0 0 chr4 36912285 36912314 -165416033 + AT_rich Low_complexity Low_complexity 1 29 0 32 43 0 0 chr4 36912529 36912575 -165415772 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr4 36913066 36913095 -165415252 + AT_rich Low_complexity Low_complexity 1 29 0 2084 183 35 21 chr4 36913743 36914170 -165414177 + Tigger2a DNA MER2_type 2 434 0 2206 145 50 8 chr4 36914929 36915309 -165413038 - MSTA LTR MaLR 0 428 33 1629 168 10 34 chr4 36915702 36916019 -165412328 + AluSx SINE Alu 1 310 0 22 56 0 0 chr4 36916698 36916734 -165411613 + AT_rich Low_complexity Low_complexity 1 36 0 264 365 90 9 chr4 36916984 36917206 -165411141 - MIR SINE MIR 0 262 23 231 266 0 0 chr4 36917907 36917971 -165410376 + (CATTA)n Simple_repeat Simple_repeat 2 65 0 411 221 16 33 chr4 36918282 36918404 -165409943 + L1M4 LINE L1 56 175 -6367 231 377 57 0 chr4 36918405 36918527 -165409820 + L2 LINE L2 3143 3271 -1 1725 195 28 19 chr4 36918806 36919165 -165409182 - MLT1A1 LTR MaLR 0 365 4 25 0 0 0 chr4 36920298 36920323 -165408024 + AT_rich Low_complexity Low_complexity 1 25 0 267 295 19 19 chr4 36920877 36920982 -165407365 + MLT1K LTR MaLR 482 586 -2 28 79 0 0 chr4 36923605 36923668 -165404679 + AT_rich Low_complexity Low_complexity 1 63 0 211 245 41 0 chr4 36923953 36924002 -165404345 - L2 LINE L2 0 3272 3222 759 193 16 31 chr4 36924012 36924204 -165404143 - MER53 DNA DNA 0 189 1 23354 37 2 2 chr4 36924480 36928147 -165400200 - L1PA4 LINE L1 0 6155 2487 3920 220 85 36 chr4 36928369 36928705 -165399642 - L1MB5 LINE L1 -1 6173 5855 2300 65 10 13 chr4 36928705 36929012 -165399335 - AluY SINE Alu -5 306 1 3920 220 85 36 chr4 36929012 36930257 -165398090 - L1MB5 LINE L1 -319 5855 4503 305 315 124 22 chr4 36930624 36930802 -165397545 - MLT1G1 LTR MaLR -330 200 5 249 228 158 79 chr4 36930850 36931052 -165397295 - MLT1H1-int LTR MaLR -15 1356 1139 273 265 41 41 chr4 36931516 36931614 -165396733 - MLT1H1-int LTR MaLR -1270 101 4 779 272 118 69 chr4 36931618 36932137 -165396210 - MLT1H1 LTR MaLR 0 555 12 403 305 60 46 chr4 36932155 36932525 -165395822 + L1ME3A LINE L1 5582 5956 -214 1880 206 115 0 chr4 36932691 36933118 -165395229 - MLT1D LTR MaLR -2 503 28 6449 151 54 23 chr4 36933119 36935374 -165392973 + L1MA1 LINE L1 3986 6302 0 24 0 0 0 chr4 36935374 36935398 -165392949 + AT_rich Low_complexity Low_complexity 1 24 0 376 322 82 24 chr4 36935702 36935910 -165392437 - MLT1I LTR MaLR -120 289 70 22 35 0 0 chr4 36936031 36936060 -165392287 + AT_rich Low_complexity Low_complexity 1 29 0 366 298 82 19 chr4 36936254 36936412 -165391935 - MIR SINE MIR -71 191 24 213 39 0 0 chr4 36937145 36937171 -165391176 + (TAA)n Simple_repeat Simple_repeat 1 26 0 403 353 25 0 chr4 36937513 36937717 -165390630 + L1MC4 LINE L1 5593 5801 -2007 2895 96 0 2 chr4 36938346 36938741 -165389606 - L1P LINE L1 -2362 3784 3389 372 71 0 36 chr4 36938741 36938797 -165389550 + L1PA8 LINE L1 6113 6166 -6 1674 223 54 65 chr4 36938941 36939386 -165388961 - LTR42 LTR ERVL 0 495 56 352 311 44 16 chr4 36939423 36939606 -165388741 + L1MC4 LINE L1 6696 6883 -1159 389 236 73 0 chr4 36939646 36939756 -165388591 - MLT2B2 LTR ERVL -397 118 1 224 260 21 52 chr4 36940017 36940113 -165388234 - MIR SINE MIR -65 197 105 2087 89 7 10 chr4 36940386 36940689 -165387658 + AluY SINE Alu 1 302 -9 16984 192 26 14 chr4 36941111 36944911 -165383436 + L1PA15-16 LINE L1 9 3842 -3007 1086 208 8 8 chr4 36944911 36945147 -165383200 + L1PA16 LINE L1 5931 6166 0 23 0 0 0 chr4 36946004 36946027 -165382320 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 36946311 36946334 -165382013 + AT_rich Low_complexity Low_complexity 1 23 0 279 114 0 0 chr4 36946861 36946905 -165381442 + (TG)n Simple_repeat Simple_repeat 2 45 0 198 0 0 0 chr4 36947396 36947418 -165380929 + (TA)n Simple_repeat Simple_repeat 2 23 0 205 179 0 0 chr4 36947587 36947626 -165380721 + GA-rich Low_complexity Low_complexity 2 40 0 292 279 72 0 chr4 36948017 36948128 -165380219 + L1MEc LINE L1 45 163 -6233 622 257 57 33 chr4 36948663 36948873 -165379474 - MER58A DNA MER1_type -3 221 7 393 294 76 89 chr4 36949300 36949603 -165378744 - HAL1 LINE L1 -145 2362 2064 324 279 67 67 chr4 36949959 36950124 -165378223 + HsTC2 DNA Tc2 3 167 -1731 247 298 44 0 chr4 36950184 36950298 -165378049 + HsTC2 DNA Tc2 1530 1648 -250 2152 123 3 10 chr4 36950809 36951119 -165377228 - AluSx SINE Alu -4 308 1 200 172 52 17 chr4 36951138 36951196 -165377151 + A-rich Low_complexity Low_complexity 1 60 0 266 352 39 39 chr4 36952431 36952610 -165375737 - MLT1I LTR MaLR -191 218 40 411 231 150 6 chr4 36952648 36952849 -165375498 + HsTC2 DNA Tc2 1665 1898 0 24 32 0 0 chr4 36953354 36953385 -165374962 + AT_rich Low_complexity Low_complexity 1 31 0 2288 95 0 0 chr4 36953432 36953728 -165374619 - AluSg1 SINE Alu -13 296 1 347 356 0 15 chr4 36953839 36953971 -165374376 + MER5B DNA MER1_type 1 130 -48 339 318 47 8 chr4 36953980 36954109 -165374238 + MIR SINE MIR 47 180 -82 17699 31 0 0 chr4 36954245 36957126 -165371221 + L1PA3 LINE L1 3272 6152 -3 21 43 0 22 chr4 36957132 36957149 -165371198 + AT_rich Low_complexity Low_complexity 1 17 -28 2611 97 5 0 chr4 36957149 36957519 -165370828 + L1PA13 LINE L1 5787 6158 -5 21 43 0 22 chr4 36957519 36957547 -165370800 + AT_rich Low_complexity Low_complexity 17 45 0 2206 175 47 14 chr4 36958438 36958568 -165369779 + LOR1b LTR ERV1 2 126 -335 363 44 0 0 chr4 36958568 36958613 -165369734 + (GGAA)n Simple_repeat Simple_repeat 3 47 0 2206 175 47 14 chr4 36958613 36958927 -165369420 + LOR1b LTR ERV1 126 461 0 540 254 134 65 chr4 36960096 36960538 -165367809 - LTR40c LTR ERVL -55 410 1 259 261 0 29 chr4 36960741 36960810 -165367537 + GA-rich Low_complexity Low_complexity 4 70 0 26 30 0 0 chr4 36961376 36961409 -165366938 + AT_rich Low_complexity Low_complexity 1 33 0 2240 102 0 16 chr4 36961440 36961755 -165366592 - AluSp SINE Alu -3 310 1 3004 183 50 19 chr4 36961950 36962617 -165365730 - L1MA8 LINE L1 -5 7246 6560 1367 120 10 5 chr4 36962623 36962831 -165365516 - AluSg/x SINE Alu -23 289 81 402 70 0 99 chr4 36962831 36962902 -165365445 - AluSc SINE Alu -153 146 83 1566 209 78 5 chr4 36962921 36963593 -165364754 - L1MA8 LINE L1 -684 6567 5827 250 200 0 0 chr4 36963593 36963638 -165364709 - MSTB LTR MaLR 0 426 382 2461 241 103 10 chr4 36963638 36964497 -165363850 - L1MA8 LINE L1 -3032 4074 3177 3139 229 155 82 chr4 36964553 36965359 -165362988 - L1MA8 LINE L1 -5403 1627 881 2376 93 0 0 chr4 36965359 36965669 -165362678 - AluY SINE Alu -1 310 1 3139 229 155 82 chr4 36965669 36966379 -165361968 - L1MA8 LINE L1 -6149 881 1 2459 69 0 3 chr4 36966390 36966693 -165361654 - AluY SINE Alu -9 302 1 1249 245 47 18 chr4 36967128 36967555 -165360792 + L1ME1 LINE L1 5625 6074 -92 270 81 0 0 chr4 36967750 36967787 -165360560 - MLT2C2 LTR ERVL -11 453 417 237 232 0 0 chr4 36967813 36967869 -165360478 - L1MC4 LINE L1 -1339 6703 6648 242 146 0 0 chr4 36967870 36967918 -165360429 - LTR66 LTR ERVL -172 438 391 1528 153 68 74 chr4 36967943 36968309 -165360038 + THE1B LTR MaLR 1 364 0 * 2165 206 20 51 chr4 36968309 36968794 -165359553 - MLT2B2 LTR ERVL -45 470 1 28 79 0 0 chr4 36968915 36968978 -165359369 + AT_rich Low_complexity Low_complexity 1 63 0 273 360 82 50 chr4 36969298 36969701 -165358646 - L2 LINE L2 -602 2712 2297 1908 169 0 3 chr4 36971449 36971762 -165356585 - AluJb SINE Alu 0 312 1 207 278 98 30 chr4 36972519 36972652 -165355695 + MIR SINE MIR 65 206 -56 1678 327 85 25 chr4 36972859 36973932 -165354415 - L2 LINE L2 -6 3307 2177 598 316 197 28 chr4 36973994 36974522 -165353825 - L2 LINE L2 -1739 1575 959 271 207 12 24 chr4 36974541 36974623 -165353724 + T-rich Low_complexity Low_complexity 6 86 0 21 0 0 0 chr4 36975640 36975661 -165352686 + AT_rich Low_complexity Low_complexity 1 21 0 269 344 38 71 chr4 36975662 36975812 -165352535 + L3 LINE CR1 1371 1514 -63 1392 171 154 55 chr4 36975812 36976234 -165352113 - MLT2C2 LTR ERVL 0 464 1 269 344 38 71 chr4 36976234 36976295 -165352052 + L3 LINE CR1 1514 1575 -2 394 336 99 34 chr4 36976432 36976816 -165351531 + L2 LINE L2 2440 2848 -466 1029 283 95 42 chr4 36977906 36978380 -165349967 + LTR33A LTR ERVL 5 503 -20 652 334 90 68 chr4 36979361 36980290 -165348057 + L2 LINE L2 1614 2563 -751 689 209 0 20 chr4 36980290 36980438 -165347909 - MLT1A2 LTR MaLR -229 145 1 659 184 82 14 chr4 36981107 36981254 -165347093 + LTR47A LTR ERVL 280 436 -16 2104 129 3 0 chr4 36982691 36982994 -165345353 - AluSg SINE Alu 0 310 7 317 283 18 9 chr4 36983298 36983411 -165344936 + CT-rich Low_complexity Low_complexity 3 116 0 727 118 0 0 chr4 36983475 36983585 -165344762 + AluSg/x SINE Alu 189 298 -14 681 302 20 86 chr4 36983608 36984205 -165344142 - L2 LINE L2 -96 3217 2664 317 159 0 29 chr4 36984644 36984713 -165343634 + CT-rich Low_complexity Low_complexity 2 68 0 1404 149 0 93 chr4 36984721 36985023 -165343324 - AluJb SINE Alu -14 298 25 880 36 0 18 chr4 37035874 37035986 -165292361 + L1PA3 LINE L1 6046 6155 0 1966 138 0 0 chr4 37036463 37036745 -165291602 + AluSx SINE Alu 1 282 -30 23 0 0 0 chr4 37037221 37037244 -165291103 + AT_rich Low_complexity Low_complexity 1 23 0 4692 155 49 24 chr4 37037804 37038724 -165289623 + L1MA3 LINE L1 5361 6303 -2 21 36 0 0 chr4 37039153 37039181 -165289166 + AT_rich Low_complexity Low_complexity 1 28 0 1829 178 0 6 chr4 37039368 37039682 -165288665 - AluSx SINE Alu 0 312 1 24 53 0 0 chr4 37039782 37039820 -165288527 + AT_rich Low_complexity Low_complexity 1 38 0 1395 135 0 10 chr4 37039953 37040161 -165288186 - AluSx SINE Alu -106 206 1 24 53 0 0 chr4 37040261 37040299 -165288048 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr4 37040326 37040349 -165287998 + AT_rich Low_complexity Low_complexity 1 23 0 245 200 57 14 chr4 37040662 37040675 -165287672 - Charlie2 DNA MER1_type -45 2817 2806 231 36 0 0 chr4 37040675 37040703 -165287644 + (TA)n Simple_repeat Simple_repeat 2 29 0 245 200 57 14 chr4 37040703 37040759 -165287588 - Charlie2 DNA MER1_type -56 2806 2745 322 228 0 44 chr4 37040806 37040920 -165287427 - Charlie2 DNA MER1_type -120 2742 2634 21 0 0 0 chr4 37042148 37042169 -165286178 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 37042923 37042951 -165285396 + AT_rich Low_complexity Low_complexity 1 28 0 1972 149 38 19 chr4 37043079 37043447 -165284900 - THE1C LTR MaLR 0 375 1 8641 151 56 10 chr4 37043447 37044956 -165283391 - THE1C-int LTR MaLR 0 1580 3 1878 159 74 6 chr4 37044958 37045309 -165283038 - THE1C LTR MaLR 0 375 1 2013 200 36 17 chr4 37045882 37046357 -165281990 + L1MB8 LINE L1 5693 6176 -2 202 228 38 13 chr4 37046628 37046707 -165281640 + (TAA)n Simple_repeat Simple_repeat 1 81 0 656 285 79 28 chr4 37046707 37046921 -165281426 - MIR SINE MIR -15 247 23 23 0 0 0 chr4 37047149 37047172 -165281175 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 37048000 37048028 -165280319 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 37048371 37048397 -165279950 + AT_rich Low_complexity Low_complexity 1 26 0 9974 213 30 35 chr4 37048630 37049519 -165278828 - ERVL-B1 LTR ERVL -3558 2206 1314 2186 79 0 3 chr4 37049519 37049809 -165278538 + AluY SINE Alu 1 289 -22 9974 213 30 35 chr4 37049809 37050446 -165277901 - ERVL-B1 LTR ERVL -4450 1314 675 306 0 0 0 chr4 37050446 37050480 -165277867 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 9974 213 30 35 chr4 37050480 37050574 -165277773 - ERVL-B1 LTR ERVL -5089 675 582 2238 191 19 9 chr4 37050574 37050994 -165277353 + MSTB LTR MaLR 3 426 0 9974 213 30 35 chr4 37050994 37051195 -165277152 - ERVL-B1 LTR ERVL -5182 582 382 1251 121 67 36 chr4 37051195 37051418 -165276929 - MER30 DNA MER1_type 0 230 1 9974 213 30 35 chr4 37051418 37051809 -165276538 - ERVL-B1 LTR ERVL -5382 382 2 423 229 29 19 chr4 37051874 37051979 -165276368 - MLT2B1 LTR ERVL -38 482 377 1170 182 5 0 chr4 37052002 37052211 -165276136 - MLT2B1 LTR ERVL -310 210 1 1332 231 17 0 chr4 37052215 37052487 -165275860 + MLT2B1 LTR ERVL 206 369 -28 210 189 0 19 chr4 37052497 37052550 -165275797 + (TAA)n Simple_repeat Simple_repeat 3 54 0 260 159 0 8 chr4 37052571 37052627 -165275720 + MLT2B2 LTR ERVL 467 515 0 180 185 43 0 chr4 37052681 37052773 -165275574 + (TTAA)n Simple_repeat Simple_repeat 1 96 0 1295 214 7 3 chr4 37054729 37055037 -165273310 + L1 LINE L1 2794 3102 -3044 397 233 25 17 chr4 37055038 37055158 -165273189 + L1MA5 LINE L1 13 133 -7432 * 5568 206 40 26 chr4 37055156 37056596 -165271751 + L1MA5 LINE L1 1985 3443 -4122 3454 221 83 7 chr4 37056612 37057480 -165270867 + L1P5 LINE L1 6 939 -5924 13566 207 24 6 chr4 37057581 37060880 -165267467 + L1P5 LINE L1 2802 6163 -704 3442 180 33 16 chr4 37060879 37061021 -165267326 + L1MA5 LINE L1 6020 6158 -1561 * 537 125 0 0 chr4 37061021 37061101 -165267246 - MADE1 DNA Mariner 0 80 1 3442 180 33 16 chr4 37061101 37062232 -165266115 + L1MA5 LINE L1 6158 7323 -396 32 26 0 0 chr4 37062344 37062383 -165265964 + AT_rich Low_complexity Low_complexity 1 39 0 519 288 92 43 chr4 37062964 37063275 -165265072 + MLT1G3 LTR MaLR 4 376 -179 241 204 57 68 chr4 37063306 37063394 -165264953 + MLT1G3 LTR MaLR 464 550 -5 23 0 0 0 chr4 37063739 37063762 -165264585 + AT_rich Low_complexity Low_complexity 1 23 0 198 340 69 28 chr4 37063831 37063975 -165264372 - L2 LINE L2 -453 2861 2712 1939 154 3 6 chr4 37064138 37064450 -165263897 + AluSx SINE Alu 1 311 -1 640 210 6 6 chr4 37064471 37064633 -165263714 + L1MA8 LINE L1 6128 6289 -2 735 339 45 15 chr4 37064641 37064974 -165263373 + L1MEc LINE L1 121 463 -5933 302 198 19 38 chr4 37064990 37065147 -165263200 + GA-rich Low_complexity Low_complexity 3 156 0 2239 197 30 12 chr4 37065165 37065663 -165262684 + L1MA5 LINE L1 4767 5273 -873 1735 173 42 11 chr4 37065789 37066148 -165262199 + L1MA5 LINE L1 5908 6277 -23 1636 156 0 0 chr4 37066237 37066480 -165261867 - MER1B DNA MER1_type -95 244 2 250 323 120 32 chr4 37066724 37066882 -165261465 - MIR SINE MIR -90 172 1 4851 87 12 27 chr4 37068457 37069190 -165259157 + LTR30 LTR ERV1 1 722 0 201 200 67 22 chr4 37069245 37069380 -165258967 + (TA)n Simple_repeat Simple_repeat 2 142 0 * 315 216 41 35 chr4 37069311 37069482 -165258865 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 23 0 0 0 chr4 37071599 37071622 -165256725 + AT_rich Low_complexity Low_complexity 1 23 0 604 208 8 24 chr4 37071911 37072036 -165256311 + FLAM_A SINE Alu 2 124 -9 222 171 0 0 chr4 37072976 37073017 -165255330 + (TA)n Simple_repeat Simple_repeat 1 41 0 3548 147 47 0 chr4 37073501 37074125 -165254222 + MER39B LTR ERV1 1 653 0 1007 31 86 0 chr4 37074287 37074415 -165253932 - MER85 DNA T2_type 0 139 1 25 0 0 0 chr4 37078078 37078103 -165250244 + AT_rich Low_complexity Low_complexity 1 25 0 186 103 0 0 chr4 37078779 37078808 -165249539 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 247 298 138 0 chr4 37078975 37079069 -165249278 - MIR3 SINE MIR -8 200 94 2150 284 68 38 chr4 37080117 37080984 -165247363 + L2 LINE L2 1728 2620 -694 233 388 118 6 chr4 37080986 37081156 -165247191 + L2 LINE L2 2778 2966 -348 698 353 39 12 chr4 37081156 37081414 -165246933 + MER45C DNA AcHobo 1 265 -688 488 232 167 5 chr4 37081476 37081703 -165246644 + MER45 DNA AcHobo 690 1581 0 198 370 31 76 chr4 37081703 37081914 -165246433 + L2 LINE L2 2958 3160 -153 243 0 0 0 chr4 37081914 37081941 -165246406 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 198 370 31 76 chr4 37081941 37081953 -165246394 + L2 LINE L2 3160 3171 -142 212 387 0 9 chr4 37082877 37082983 -165245364 - L2 LINE L2 0 3272 3168 2700 231 33 26 chr4 37083799 37084457 -165243890 - MER76 LTR ERV -4 684 22 312 335 149 60 chr4 37084742 37085378 -165242969 + L2 LINE L2 2283 2975 -339 1607 126 0 63 chr4 37085448 37085717 -165242630 - AluSx SINE Alu -53 259 8 282 329 29 65 chr4 37086859 37087029 -165241318 + MIR3 SINE MIR 39 202 -6 216 0 0 0 chr4 37087118 37087142 -165241205 + (TG)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr4 37087354 37087380 -165240967 + AT_rich Low_complexity Low_complexity 1 26 0 1271 259 52 22 chr4 37087486 37087888 -165240459 - MLT1D LTR MaLR -1 504 91 465 82 0 0 chr4 37087888 37087969 -165240378 + Alu SINE Alu 222 302 0 4950 221 33 23 chr4 37087969 37089405 -165238942 - L1 LINE L1 -1737 4409 2959 2543 244 28 25 chr4 37089404 37089769 -165238578 + L1PB4 LINE L1 4600 4963 -1183 * 1913 80 48 51 chr4 37089769 37090080 -165238267 + AluY SINE Alu 1 310 -1 2543 244 28 25 chr4 37090080 37090500 -165237847 + L1PB4 LINE L1 4963 5387 -759 2517 147 35 35 chr4 37090506 37090970 -165237377 + L1PB4 LINE L1 5490 5953 -203 301 64 21 0 chr4 37090970 37091009 -165237338 + L1PA16 LINE L1 6103 6150 -16 1838 180 0 72 chr4 37091041 37091485 -165236862 + L1M3 LINE L1 5387 5798 -536 376 233 0 80 chr4 37091529 37091678 -165236669 + L1MB1 LINE L1 5681 5818 -494 1925 141 28 14 chr4 37091869 37092230 -165236117 + L1MB1 LINE L1 5803 6168 0 297 322 51 0 chr4 37092246 37092364 -165235983 - L2 LINE L2 -1898 1416 1293 27 96 0 0 chr4 37092414 37092497 -165235850 + AT_rich Low_complexity Low_complexity 1 83 0 350 283 117 28 chr4 37092798 37092943 -165235404 + MIR SINE MIR 75 232 -30 897 320 49 31 chr4 37093191 37093703 -165234644 - MLT1H1 LTR MaLR -5 550 30 268 323 73 0 chr4 37093944 37094068 -165234279 - L2 LINE L2 -6 3307 3175 806 277 28 5 chr4 37094155 37094368 -165233979 + MER58A DNA MER1_type 2 219 -5 875 214 133 76 chr4 37095225 37095594 -165232753 + MER57A LTR ERV1 14 403 0 189 121 0 0 chr4 37095773 37095806 -165232541 + (CA)n Simple_repeat Simple_repeat 2 34 0 2171 87 7 0 chr4 37097488 37097776 -165230571 + AluSc SINE Alu 1 290 -19 380 356 36 24 chr4 37098060 37098310 -165230037 + L1ME3A LINE L1 4981 5233 -913 1124 324 61 9 chr4 37098325 37098968 -165229379 + L1ME3A LINE L1 5321 5996 -174 22 0 0 0 chr4 37099423 37099445 -165228902 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr4 37100697 37100726 -165227621 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 37100899 37100930 -165227417 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 37101893 37101921 -165226426 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr4 37102546 37102588 -165225759 + AT_rich Low_complexity Low_complexity 1 42 0 386 339 8 8 chr4 37102775 37102905 -165225442 + L2 LINE L2 3179 3308 -5 855 194 27 70 chr4 37103059 37103317 -165225030 + LTR1B LTR ERV1 1 247 -579 1272 184 141 72 chr4 37103344 37103790 -165224557 + LTR1B LTR ERV1 350 826 0 686 316 14 47 chr4 37103791 37104001 -165224346 + LTR16A LTR ERVL 152 351 -99 3110 127 16 18 chr4 37104001 37104515 -165223832 - LTR10D LTR ERV1 0 513 1 686 316 14 47 chr4 37104515 37104601 -165223746 + LTR16A LTR ERVL 351 438 -12 428 369 97 4 chr4 37104936 37105286 -165223061 + L1M4 LINE L1 3753 4181 -1965 26 0 0 0 chr4 37105286 37105312 -165223035 + AT_rich Low_complexity Low_complexity 1 26 0 428 369 97 4 chr4 37105312 37105400 -165222947 + L1M4 LINE L1 4181 4259 -1887 24 0 0 0 chr4 37105577 37105601 -165222746 + AT_rich Low_complexity Low_complexity 1 24 0 1217 128 5 20 chr4 37107305 37107500 -165220847 + MER4B LTR ERV1 419 610 0 2129 64 7 17 chr4 37108039 37108335 -165220012 + AluY SINE Alu 4 296 -15 207 0 0 0 chr4 37108738 37108761 -165219586 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 934 91 0 21 chr4 37108843 37108986 -165219361 - L1MA3 LINE L1 0 6305 6166 446 246 29 82 chr4 37109731 37109902 -165218445 - MER63A DNA MER1_type -14 196 35 24 0 0 0 chr4 37110117 37110141 -165218206 + AT_rich Low_complexity Low_complexity 1 24 0 2815 185 13 43 chr4 37110300 37110931 -165217416 + LTR9 LTR ERV1 1 612 0 24 32 0 0 chr4 37111119 37111150 -165217197 + AT_rich Low_complexity Low_complexity 1 31 0 1153 191 43 119 chr4 37112460 37112947 -165215400 - LTR7 LTR ERV1 0 450 1 30 27 0 0 chr4 37112980 37113017 -165215330 + AT_rich Low_complexity Low_complexity 1 37 0 3337 116 56 0 chr4 37113176 37113693 -165214654 + MER41A LTR ERV1 1 546 -8 922 239 81 36 chr4 37113744 37114005 -165214342 - MER84 LTR ERVI -33 474 180 2273 110 3 0 chr4 37114005 37114313 -165214034 + AluSp SINE Alu 1 309 -4 922 239 81 36 chr4 37114313 37114502 -165213845 - MER84 LTR ERVI -327 180 1 253 300 50 10 chr4 37114569 37114669 -165213678 - LTR65 LTR ERV1 -6 663 560 456 197 106 28 chr4 37114896 37115038 -165213309 - LTR65 LTR ERV1 -499 170 18 336 221 69 69 chr4 37115218 37115349 -165212998 - L1M4 LINE L1 -846 5300 5170 25 0 0 0 chr4 37115528 37115553 -165212794 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr4 37115636 37115678 -165212669 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr4 37115845 37115871 -165212476 + AT_rich Low_complexity Low_complexity 1 26 0 355 331 103 25 chr4 37115883 37116125 -165212222 + L1ME LINE L1 5424 5684 -437 23 0 0 0 chr4 37116222 37116245 -165212102 + AT_rich Low_complexity Low_complexity 1 23 0 464 269 66 105 chr4 37116250 37116507 -165211840 - MIR SINE MIR 0 262 16 22 35 0 0 chr4 37116724 37116753 -165211594 + AT_rich Low_complexity Low_complexity 1 29 0 1134 225 34 129 chr4 37117185 37117220 -165211127 - MLT1E LTR MaLR 0 593 556 2233 107 0 3 chr4 37117220 37117519 -165210828 + AluY SINE Alu 1 298 -13 1134 225 34 129 chr4 37117519 37117961 -165210386 - MLT1E LTR MaLR -37 556 168 2210 101 34 0 chr4 37117961 37118257 -165210090 + AluY SINE Alu 1 306 -5 1134 225 34 129 chr4 37118257 37118306 -165210041 - MLT1E LTR MaLR -425 168 116 561 320 0 6 chr4 37118316 37118472 -165209875 - MLT1E LTR MaLR -431 162 8 1511 183 67 59 chr4 37118883 37119255 -165209092 - THE1C LTR MaLR 0 375 1 6674 153 61 54 chr4 37119255 37120588 -165207759 - THE1C-int LTR MaLR 0 1646 371 2510 71 0 0 chr4 37120588 37120897 -165207450 - AluY SINE Alu -2 309 1 6674 153 61 54 chr4 37120897 37121269 -165207078 - THE1C-int LTR MaLR -1275 371 3 1172 222 68 52 chr4 37121271 37121640 -165206707 - THE1C LTR MaLR 0 375 1 2108 149 0 0 chr4 37122122 37122431 -165205916 + AluSx SINE Alu 1 309 -3 213 39 0 0 chr4 37122723 37122749 -165205598 + (TC)n Simple_repeat Simple_repeat 1 26 0 22 70 0 0 chr4 37123118 37123161 -165205186 + AT_rich Low_complexity Low_complexity 1 43 0 203 184 0 0 chr4 37123765 37123803 -165204544 + (CATA)n Simple_repeat Simple_repeat 3 40 0 2063 126 0 13 chr4 37124001 37124302 -165204045 - AluSx SINE Alu -15 297 1 516 292 145 46 chr4 37124852 37125485 -165202862 + L1MEc LINE L1 1061 1691 -893 1139 294 91 28 chr4 37125831 37126690 -165201657 + L1MEc LINE L1 2145 3133 -3013 795 248 58 0 chr4 37126690 37126896 -165201451 + MER58A DNA MER1_type 4 221 -3 1139 294 91 28 chr4 37126896 37127486 -165200861 + L1MEc LINE L1 3133 3685 -2461 631 304 72 15 chr4 37127553 37127954 -165200393 + L1MEc LINE L1 3777 4200 -1946 222 329 0 0 chr4 37127977 37128053 -165200294 + (TATATG)n Simple_repeat Simple_repeat 3 78 0 906 190 156 80 chr4 37128343 37128606 -165199741 + MLT1B LTR MaLR 104 386 -4 23 54 0 0 chr4 37131136 37131173 -165197174 + AT_rich Low_complexity Low_complexity 1 37 0 3248 118 47 75 chr4 37131359 37131976 -165196371 - MER4A LTR ERV1 0 600 1 23 0 0 0 chr4 37132312 37132335 -165196012 + AT_rich Low_complexity Low_complexity 1 23 0 2101 126 7 13 chr4 37132634 37132943 -165195404 - AluSx SINE Alu -5 307 1 1478 224 25 13 chr4 37133423 37133740 -165194607 - MLT2B2 LTR ERVL -194 321 1 186 43 0 0 chr4 37133754 37133777 -165194570 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1138 101 53 0 chr4 37133828 37133901 -165194446 - MER30B DNA MER1_type -6 184 116 216 0 0 0 chr4 37133901 37133925 -165194422 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1138 101 53 0 chr4 37133925 37134020 -165194327 - MER30B DNA MER1_type -74 116 7 5611 115 26 15 chr4 37134144 37135051 -165193296 - L1MA1 LINE L1 -1 6301 5385 832 106 206 0 chr4 37135051 37135192 -165193155 - AluSc SINE Alu -2 307 138 216 0 0 0 chr4 37135194 37135218 -165193129 + (TA)n Simple_repeat Simple_repeat 2 25 0 2216 105 3 0 chr4 37135218 37135513 -165192834 - AluSp SINE Alu -16 297 2 3245 182 2 2 chr4 37135520 37136142 -165192205 - L1MA1 LINE L1 -758 5388 4767 806 134 17 24 chr4 37136207 37136563 -165191784 + CT-rich Low_complexity Low_complexity 1 353 0 790 334 46 14 chr4 37136563 37136931 -165191416 - L1MEc LINE L1 -5896 500 121 552 178 75 0 chr4 37136952 37137098 -165191249 - L1MA8 LINE L1 -10 6281 6125 186 43 0 0 chr4 37137107 37137130 -165191217 + (TA)n Simple_repeat Simple_repeat 2 24 0 543 321 110 16 chr4 37137933 37138251 -165190096 - MLT1G1 LTR MaLR -169 426 79 26 0 0 0 chr4 37138842 37138868 -165189479 + AT_rich Low_complexity Low_complexity 1 26 0 22 80 0 0 chr4 37139392 37139442 -165188905 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chr4 37140523 37140559 -165187788 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 37140812 37140833 -165187514 + AT_rich Low_complexity Low_complexity 1 21 0 225 308 11 33 chr4 37140959 37141050 -165187297 - MLT1K LTR MaLR -181 407 319 210 233 0 0 chr4 37142307 37142367 -165185980 + (TA)n Simple_repeat Simple_repeat 2 61 0 203 158 15 53 chr4 37142445 37142578 -165185769 + (TATAA)n Simple_repeat Simple_repeat 3 130 0 31 44 0 0 chr4 37142587 37142632 -165185715 + AT_rich Low_complexity Low_complexity 1 45 0 236 369 11 108 chr4 37142928 37143104 -165185243 + L2 LINE L2 3020 3178 -94 456 51 0 0 chr4 37143607 37143666 -165184681 + (TA)n Simple_repeat Simple_repeat 2 60 0 2437 77 0 3 chr4 37143781 37144091 -165184256 + AluY SINE Alu 1 309 -2 191 186 0 34 chr4 37144100 37144159 -165184188 + (TATG)n Simple_repeat Simple_repeat 4 60 0 2511 121 6 3 chr4 37144203 37144566 -165183781 - THE1B LTR MaLR 0 364 1 9138 119 47 59 chr4 37144566 37146165 -165182182 - THE1B-int LTR MaLR 0 1580 1 2475 106 14 3 chr4 37146165 37146525 -165181822 - THE1B LTR MaLR 0 364 1 4132 333 127 27 chr4 37146826 37148388 -165179959 + L2 LINE L2 32 1437 -1877 1753 5 0 5 chr4 37148388 37148584 -165179763 - AluYb8 SINE Alu -14 304 110 4132 333 127 27 chr4 37148584 37149371 -165178976 + L2 LINE L2 1437 2649 -665 1665 194 0 0 chr4 37149371 37149655 -165178692 - AluJo SINE Alu -28 284 1 4132 333 127 27 chr4 37149655 37149814 -165178533 + L2 LINE L2 2649 2791 -523 1394 206 57 136 chr4 37149814 37150372 -165177975 - MER67C LTR ERV1 0 514 1 585 330 87 43 chr4 37150372 37150869 -165177478 + L2 LINE L2 2788 3313 0 366 338 113 0 chr4 37151034 37151238 -165177109 - MIR SINE MIR -13 249 23 389 216 12 12 chr4 37151383 37151545 -165176802 + (TA)n Simple_repeat Simple_repeat 1 162 0 23 0 0 0 chr4 37151981 37152004 -165176343 + AT_rich Low_complexity Low_complexity 1 23 0 1461 227 77 3 chr4 37152861 37153214 -165175133 - L1MC2 LINE L1 -26 6318 5940 1021 346 22 42 chr4 37153775 37154368 -165173979 + L1PA16 LINE L1 788 1368 -6206 4491 248 59 15 chr4 37154824 37154889 -165173458 + L1PA16 LINE L1 2220 2281 -5303 309 26 0 0 chr4 37154889 37154927 -165173420 + (CA)n Simple_repeat Simple_repeat 2 39 0 4491 248 59 15 chr4 37154927 37156882 -165171465 + L1PA16 LINE L1 2281 4339 -3245 5214 180 27 21 chr4 37156910 37158425 -165169922 + L1PA16 LINE L1 5979 7509 -95 1772 230 49 54 chr4 37158425 37158978 -165169369 + MLT2B3 LTR ERVL 5 554 0 5214 180 27 21 chr4 37158978 37159058 -165169289 + L1PA16 LINE L1 7509 7587 -17 22 0 0 0 chr4 37159213 37159235 -165169112 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr4 37159275 37159311 -165169036 + AT_rich Low_complexity Low_complexity 1 36 0 25 83 0 0 chr4 37159356 37159416 -165168931 + AT_rich Low_complexity Low_complexity 1 60 0 249 259 0 0 chr4 37159518 37159576 -165168771 + L1ME3A LINE L1 5828 5885 -285 582 259 157 21 chr4 37159588 37159913 -165168434 - LTR37A LTR ERV1 -8 418 50 324 191 67 0 chr4 37160124 37160213 -165168134 + MLT1F LTR MaLR 440 534 -8 443 253 38 27 chr4 37161360 37161546 -165166801 + Charlie1 DNA MER1_type 2570 2757 -4 272 242 70 96 chr4 37161669 37162053 -165166294 - MER31-int LTR ERV1 -2858 2078 1705 1006 236 43 83 chr4 37162199 37162598 -165165749 - MLT1B LTR MaLR 0 390 8 529 222 72 12 chr4 37162634 37162801 -165165546 - LTR37A LTR ERV1 -46 380 204 419 282 166 17 chr4 37162983 37163164 -165165183 + L1ME3A LINE L1 5954 6161 -9 446 237 0 103 chr4 37163186 37163259 -165165088 + L1M4 LINE L1 2217 2296 -3850 775 134 16 16 chr4 37163259 37163386 -165164961 + FLAM_C SINE Alu 2 128 -5 446 237 0 103 chr4 37163386 37163506 -165164841 + L1M4 LINE L1 2296 2390 -3756 1839 166 76 15 chr4 37164785 37165128 -165163219 - THE1B LTR MaLR 0 364 1 8381 135 14 25 chr4 37165128 37166291 -165162056 - THE1B-int LTR MaLR 0 1580 405 996 88 0 0 chr4 37166291 37166416 -165161931 - AluY SINE Alu -180 131 7 694 227 68 0 chr4 37166416 37166579 -165161768 + FAM SINE Alu 2 175 0 8381 135 14 25 chr4 37166579 37166999 -165161348 - THE1B-int LTR MaLR -1173 407 7 2035 141 77 15 chr4 37166999 37167339 -165161008 - THE1B LTR MaLR -3 361 1 1736 192 0 10 chr4 37167990 37168303 -165160044 + AluJo SINE Alu 2 311 -1 23 0 0 0 chr4 37168307 37168330 -165160017 + AT_rich Low_complexity Low_complexity 1 23 0 186 314 0 0 chr4 37168360 37168411 -165159936 - L2 LINE L2 0 3313 3263 849 111 78 26 chr4 37169319 37169472 -165158875 - L1MA1 LINE L1 -35 6267 6107 21 36 0 0 chr4 37170196 37170224 -165158123 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 37170334 37170356 -165157991 + AT_rich Low_complexity Low_complexity 1 22 0 369 58 0 0 chr4 37170556 37170608 -165157739 + (TATG)n Simple_repeat Simple_repeat 2 53 0 515 83 2 7 chr4 37171071 37171151 -165157196 + L1PB1 LINE L1 5922 5999 -155 477 105 13 0 chr4 37171154 37171230 -165157117 - L1P LINE L1 -1430 4716 4640 1037 121 0 0 chr4 37171230 37171383 -165156964 + L1PB1 LINE L1 5993 6149 -2 676 258 107 9 chr4 37171555 37171780 -165156567 + LTR16A LTR ERVL 169 415 -35 21 0 0 0 chr4 37172063 37172084 -165156263 + AT_rich Low_complexity Low_complexity 1 21 0 227 337 0 0 chr4 37172478 37172564 -165155783 + (CATA)n Simple_repeat Simple_repeat 3 88 0 360 317 44 11 chr4 37172652 37172832 -165155515 + MER105 DNA DNA 4 189 -15 812 239 21 13 chr4 37173117 37173355 -165154992 - L1MCa LINE L1 -1280 4935 4696 290 234 191 14 chr4 37173368 37173509 -165154838 - MLT1D LTR MaLR -259 246 81 2793 288 66 12 chr4 37173604 37174854 -165153493 - L1MCa LINE L1 -2520 3695 2379 225 0 0 0 chr4 37174906 37174931 -165153416 + (TA)n Simple_repeat Simple_repeat 1 25 0 1277 266 128 27 chr4 37174941 37175924 -165152423 - L1MCa LINE L1 -3950 2265 1365 322 203 13 13 chr4 37176254 37176333 -165152014 + L1MC1 LINE L1 6249 6327 -6 6524 72 11 0 chr4 37176661 37178164 -165150183 - L1PA7 LINE L1 -3 6151 4631 380 129 0 14 chr4 37179319 37179389 -165148958 + (TC)n Simple_repeat Simple_repeat 2 70 0 987 147 6 6 chr4 37179612 37179768 -165148579 - AluJ SINE Alu -39 273 118 23 0 0 0 chr4 37180039 37180062 -165148285 + AT_rich Low_complexity Low_complexity 1 23 0 1022 152 39 6 chr4 37180786 37180964 -165147383 - L1MA9 LINE L1 -74 6238 6055 29 28 0 0 chr4 37181504 37181540 -165146807 + AT_rich Low_complexity Low_complexity 1 36 0 196 286 100 43 chr4 37181685 37181825 -165146522 + MIR3 SINE MIR 30 177 -31 26 82 0 0 chr4 37181851 37181912 -165146435 + AT_rich Low_complexity Low_complexity 1 61 0 22 35 0 0 chr4 37182235 37182264 -165146083 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 37182662 37182693 -165145654 + AT_rich Low_complexity Low_complexity 1 31 0 426 265 117 13 chr4 37183050 37183280 -165145067 + L1ME3A LINE L1 5628 5881 -289 1567 26 21 0 chr4 37183341 37183535 -165144812 - L1PA4 LINE L1 -4 6151 5954 863 117 8 0 chr4 37184173 37184293 -165144054 - AluJ SINE Alu -191 121 1 362 306 56 67 chr4 37185346 37185526 -165142821 - L2 LINE L2 -18 3295 3118 21 57 0 0 chr4 37186945 37186980 -165141367 + AT_rich Low_complexity Low_complexity 1 35 0 211 281 115 42 chr4 37187041 37187137 -165141210 - L2 LINE L2 -18 3295 3193 1184 133 5 5 chr4 37187586 37187782 -165140565 + L1MA1 LINE L1 6099 6294 -8 33 0 0 0 chr4 37187782 37187815 -165140532 + AT_rich Low_complexity Low_complexity 1 33 0 386 169 32 13 chr4 37187890 37188044 -165140303 + (TA)n Simple_repeat Simple_repeat 1 157 0 23 0 0 0 chr4 37188070 37188093 -165140254 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 37188118 37188139 -165140208 + AT_rich Low_complexity Low_complexity 1 21 0 1646 227 117 14 chr4 37188198 37188696 -165139651 - L1ME1 LINE L1 -165 6001 5453 22 0 0 0 chr4 37188853 37188875 -165139472 + AT_rich Low_complexity Low_complexity 1 22 0 318 333 40 0 chr4 37189652 37189751 -165138596 - MER5A DNA MER1_type -78 111 9 383 325 48 0 chr4 37189758 37189884 -165138463 + L2 LINE L2 1557 1688 -1626 1712 343 102 24 chr4 37189884 37191124 -165137223 + L2 LINE L2 1838 3177 -136 2644 33 0 0 chr4 37191136 37191440 -165136907 - AluY SINE Alu -7 304 1 280 170 0 0 chr4 37191466 37191519 -165136828 - 5S rRNA rRNA -20 101 49 379 207 11 0 chr4 37191519 37191606 -165136741 + L1PA16 LINE L1 6078 6165 -1 21 0 0 0 chr4 37191680 37191701 -165136646 + AT_rich Low_complexity Low_complexity 1 21 0 222 91 0 0 chr4 37192107 37192140 -165136207 + (TG)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr4 37192616 37192638 -165135709 + AT_rich Low_complexity Low_complexity 1 22 0 2522 247 10 82 chr4 37193128 37193962 -165134385 + L1M4 LINE L1 4 777 -6253 227 343 0 29 chr4 37193982 37194087 -165134260 + L1M3e LINE L1 1579 1680 -5350 1606 246 78 25 chr4 37194185 37194661 -165133686 + MLT1D LTR MaLR 5 505 0 560 312 51 38 chr4 37194791 37195028 -165133319 - MIR SINE MIR -5 257 18 270 0 0 0 chr4 37195533 37195563 -165132784 + (CA)n Simple_repeat Simple_repeat 2 31 0 1232 226 52 38 chr4 37197203 37197570 -165130777 + MLT1A2 LTR MaLR 1 372 -2 1894 126 0 7 chr4 37197826 37198103 -165130244 - AluSq SINE Alu -38 275 1 2149 118 7 7 chr4 37198718 37199023 -165129324 - AluSp SINE Alu -8 305 1 23 78 0 0 chr4 37199074 37199125 -165129222 + AT_rich Low_complexity Low_complexity 1 51 0 339 65 0 0 chr4 37199232 37199278 -165129069 + (TG)n Simple_repeat Simple_repeat 1 46 0 1216 247 21 59 chr4 37199313 37199702 -165128645 + MLT1A2 LTR MaLR 1 374 0 1421 195 15 0 chr4 37200207 37200479 -165127868 - Tigger3(Golem) DNA MER2_type -13 3016 2741 2290 182 5 21 chr4 37200487 37200922 -165127425 + MSTC LTR MaLR 1 428 0 4613 170 16 7 chr4 37200922 37201811 -165126536 + L1MA6 LINE L1 5404 6300 0 285 268 0 0 chr4 37204172 37204228 -165124119 - L2 LINE L2 -328 2985 2930 302 293 71 0 chr4 37204660 37204759 -165123588 - L1MC4 LINE L1 -1323 6719 6614 * 336 261 0 22 chr4 37204675 37204767 -165123580 + L1MC4 LINE L1 6614 6703 -1339 327 104 0 0 chr4 37204767 37204815 -165123532 + (TG)n Simple_repeat Simple_repeat 2 49 0 252 0 0 0 chr4 37204815 37204843 -165123504 + (TA)n Simple_repeat Simple_repeat 2 29 0 2279 250 51 64 chr4 37204854 37205637 -165122710 + L1M4 LINE L1 772 1544 -5460 2062 108 7 10 chr4 37206273 37206578 -165121769 + AluSq SINE Alu 1 304 -9 395 93 0 0 chr4 37207270 37207324 -165121023 - L1MA2 LINE L1 -183 6121 6068 598 191 0 0 chr4 37207334 37207449 -165120898 + L1MA2 LINE L1 6187 6301 -3 726 319 162 26 chr4 37210748 37211440 -165116907 - L2 LINE L2 -5 3308 2515 368 318 74 56 chr4 37211564 37211901 -165116446 + L2 LINE L2 2935 3277 -36 8215 154 3 26 chr4 37212154 37213689 -165114658 + L1PA8 LINE L1 890 2388 -3758 777 51 0 0 chr4 37213689 37213785 -165114562 + L1PA5 LINE L1 6053 6150 -4 * 19865 107 20 1 chr4 37213774 37217533 -165110814 + L1PA8 LINE L1 2374 6172 0 305 109 0 0 chr4 37217754 37217800 -165110547 + MADE1 DNA Mariner 1 46 -34 268 292 0 31 chr4 37217905 37218001 -165110346 - L1ME2 LINE L1 -9 6155 6063 1826 191 0 21 chr4 37218141 37218481 -165109866 + MER1B DNA MER1_type 1 333 -4 338 369 68 9 chr4 37219360 37219582 -165108765 + L2 LINE L2 2271 2505 -809 278 307 220 32 chr4 37219993 37220211 -165108136 - MIR SINE MIR -2 260 2 201 250 19 0 chr4 37220439 37220491 -165107856 + MIR SINE MIR 79 131 -131 436 175 10 10 chr4 37220673 37220776 -165107571 + CT-rich Low_complexity Low_complexity 2 104 0 1554 245 116 22 chr4 37220928 37221548 -165106799 - L1MB7 LINE L1 -5 6677 5960 2302 156 41 0 chr4 37221556 37221967 -165106380 - MSTA LTR MaLR 0 428 1 2474 120 2 52 chr4 37221967 37222391 -165105956 - MSTA-int LTR MaLR 0 1651 1249 1480 219 20 69 chr4 37222391 37222725 -165105622 - L1MB7 LINE L1 -713 5959 5692 2208 84 0 28 chr4 37222725 37223045 -165105302 - AluY SINE Alu 0 311 1 1480 219 20 69 chr4 37223045 37223394 -165104953 - L1MB7 LINE L1 -980 5692 5328 451 248 64 94 chr4 37223416 37223691 -165104656 - L1MB7 LINE L1 -3695 2949 2667 3072 224 6 3 chr4 37223691 37224370 -165103977 - L1MB3 LINE L1 -2 6181 5501 451 248 64 94 chr4 37224370 37224713 -165103634 - L1MB7 LINE L1 -3977 2667 2358 1045 280 147 17 chr4 37224802 37225442 -165102905 - L1MB7 LINE L1 -4543 2103 1381 * 4906 148 30 4 chr4 37225424 37226269 -165102078 - L1PA16 LINE L1 -2 6164 5298 1146 234 77 12 chr4 37226265 37226693 -165101654 - L1MB7 LINE L1 -5133 1409 954 * 746 52 0 0 chr4 37226699 37226796 -165101551 - L1PA3 LINE L1 0 6155 6059 1317 32 6 0 chr4 37226796 37226954 -165101393 + L1PA3 LINE L1 5785 5943 -212 * 3324 239 38 29 chr4 37226952 37227894 -165100453 - L1MB7 LINE L1 -5576 966 16 922 198 6 17 chr4 37227918 37228090 -165100257 - MER20 DNA MER1_type -49 170 1 2264 99 3 0 chr4 37228379 37228673 -165099674 - AluSp SINE Alu -15 298 4 427 161 50 44 chr4 37229088 37229202 -165099145 + MER61E LTR ERV1 1 118 -484 673 226 29 18 chr4 37229245 37229474 -165098873 + MER61D LTR ERV1 343 491 -10 28 107 0 0 chr4 37229710 37229822 -165098525 + AT_rich Low_complexity Low_complexity 1 112 0 21 36 0 0 chr4 37229972 37230000 -165098347 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 37230007 37230035 -165098312 + AT_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr4 37230319 37230365 -165097982 + AT_rich Low_complexity Low_complexity 1 46 0 348 346 47 23 chr4 37230721 37230935 -165097412 + MIR SINE MIR 44 262 0 36 0 0 0 chr4 37230937 37230973 -165097374 + AT_rich Low_complexity Low_complexity 1 36 0 37 76 0 0 chr4 37231163 37231242 -165097105 + AT_rich Low_complexity Low_complexity 1 79 0 23 0 0 0 chr4 37231286 37231309 -165097038 + AT_rich Low_complexity Low_complexity 1 23 0 1959 207 49 2 chr4 37231482 37231888 -165096459 + MSTB LTR MaLR 2 426 0 494 289 111 14 chr4 37232234 37232442 -165095905 - MIR SINE MIR -6 256 29 266 289 83 16 chr4 37233414 37233535 -165094812 - MIR SINE MIR -48 214 86 24 0 0 0 chr4 37233789 37233813 -165094534 + AT_rich Low_complexity Low_complexity 1 24 0 1703 100 64 46 chr4 37234162 37234471 -165093876 + AluSg SINE Alu 1 314 0 27 29 0 0 chr4 37235158 37235192 -165093155 + AT_rich Low_complexity Low_complexity 1 34 0 4554 174 45 21 chr4 37235202 37236071 -165092276 - L1MA7 LINE L1 0 6291 5388 2375 123 17 3 chr4 37236071 37236430 -165091917 + THE1B LTR MaLR 1 364 0 4554 174 45 21 chr4 37236430 37236691 -165091656 - L1MA7 LINE L1 -903 5388 5135 21 100 0 0 chr4 37237846 37237916 -165090431 + AT_rich Low_complexity Low_complexity 1 70 0 1268 183 80 4 chr4 37238481 37238744 -165089603 + L1MC1 LINE L1 6046 6328 -5 2658 287 83 44 chr4 37238745 37239495 -165088852 + L1MC4a LINE L1 1062 1781 -4434 247 65 43 0 chr4 37239495 37239541 -165088806 + (TA)n Simple_repeat Simple_repeat 1 48 0 740 172 16 0 chr4 37239547 37239675 -165088672 + L1PA16 LINE L1 6026 6155 -11 2658 287 83 44 chr4 37239675 37241723 -165086624 + L1MC4a LINE L1 1785 3968 -2247 183 80 0 0 chr4 37241723 37241748 -165086599 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2658 287 83 44 chr4 37241748 37241919 -165086428 + L1MC4a LINE L1 3968 4131 -2084 183 80 0 0 chr4 37241944 37241969 -165086378 + (TATATG)n Simple_repeat Simple_repeat 4 28 0 351 294 16 0 chr4 37241983 37242109 -165086238 - MER33 DNA MER1_type -184 140 13 23 0 0 0 chr4 37243657 37243680 -165084667 + AT_rich Low_complexity Low_complexity 1 23 0 404 101 130 0 chr4 37244235 37244304 -165084043 + MADE1 DNA Mariner 3 80 0 1844 258 65 4 chr4 37244687 37245207 -165083140 - MLT1E2 LTR MaLR -28 598 47 880 181 0 0 chr4 37245322 37245471 -165082876 + FRAM SINE Alu 2 150 -26 2257 144 16 0 chr4 37245649 37246018 -165082329 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr4 37246370 37246391 -165081956 + AT_rich Low_complexity Low_complexity 1 21 0 460 360 56 33 chr4 37246563 37247213 -165081134 + L1MC4a LINE L1 5324 5660 -651 904 306 45 62 chr4 37247946 37247987 -165080360 + L1PB4 LINE L1 2 42 -6807 1713 159 78 26 chr4 37247987 37248333 -165080014 + THE1B LTR MaLR 1 364 0 10269 122 17 5 chr4 37248333 37249894 -165078453 + THE1B-int LTR MaLR 1 1580 0 1891 153 44 33 chr4 37249894 37250254 -165078093 + THE1B LTR MaLR 1 364 0 904 306 45 62 chr4 37250254 37250948 -165077399 + L1PB4 LINE L1 39 726 -6123 326 346 79 65 chr4 37251066 37251280 -165077067 + L1PB4 LINE L1 787 1003 -5847 433 233 8 25 chr4 37251299 37251419 -165076928 + L1PB4 LINE L1 1408 1525 -5325 11597 225 28 35 chr4 37251424 37254742 -165073605 + L1PB4 LINE L1 1863 5200 -1659 1651 157 80 0 chr4 37254742 37255028 -165073319 + AluSx SINE Alu 1 309 -3 11597 225 28 35 chr4 37255028 37255339 -165073008 + L1PB4 LINE L1 5200 5511 -1348 1579 196 21 0 chr4 37255339 37255630 -165072717 + AluJo SINE Alu 3 299 -13 11597 225 28 35 chr4 37255630 37257005 -165071342 + L1PB4 LINE L1 5511 6858 -1 302 272 89 30 chr4 37257060 37257229 -165071118 + L1ME LINE L1 5539 5717 -404 23 54 0 0 chr4 37257465 37257502 -165070845 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr4 37258841 37258881 -165069466 + AT_rich Low_complexity Low_complexity 1 40 0 554 321 34 10 chr4 37259044 37259253 -165069094 - MIR SINE MIR -42 220 7 195 204 0 0 chr4 37259465 37259509 -165068838 + (CA)n Simple_repeat Simple_repeat 1 44 0 571 269 113 12 chr4 37259561 37259721 -165068626 - MER5A DNA MER1_type 0 189 14 214 190 203 38 chr4 37260373 37260452 -165067895 - MER5A DNA MER1_type 0 189 98 30 0 0 0 chr4 37260784 37260814 -165067533 + AT_rich Low_complexity Low_complexity 1 30 0 2752 232 33 6 chr4 37261154 37261787 -165066560 - MER82 DNA MER2_type -2 651 2 2118 125 3 0 chr4 37261927 37262230 -165066117 + AluSq SINE Alu 1 304 -9 23 0 0 0 chr4 37263205 37263228 -165065119 + AT_rich Low_complexity Low_complexity 1 23 0 1231 236 39 33 chr4 37264613 37264974 -165063373 + MLT1A1 LTR MaLR 1 363 -2 826 217 50 15 chr4 37264977 37265175 -165063172 + MLT1A1-int LTR MaLR 2 206 -1529 288 130 0 0 chr4 37265489 37265535 -165062812 + (T)n Simple_repeat Simple_repeat 1 46 0 1811 213 19 5 chr4 37265684 37266059 -165062288 + MLT1A1-int LTR MaLR 199 578 -1157 361 136 0 0 chr4 37266067 37266153 -165062194 - MLT2A2 LTR ERVL 0 458 394 262 243 0 0 chr4 37266153 37266227 -165062120 - L1MC4 LINE L1 -1355 6687 6614 237 33 0 0 chr4 37266227 37266257 -165062090 + (GA)n Simple_repeat Simple_repeat 2 31 0 632 43 97 0 chr4 37266499 37266706 -165061641 + (TA)n Simple_repeat Simple_repeat 1 227 0 1024 75 29 0 chr4 37266722 37266895 -165061452 + (TA)n Simple_repeat Simple_repeat 1 178 0 517 282 53 6 chr4 37266901 37267169 -165061178 - MLT2A2 LTR ERVL -91 463 185 307 271 15 53 chr4 37267179 37267312 -165061035 + MLT1A1-int LTR MaLR 599 726 -645 1332 220 34 37 chr4 37267542 37267896 -165060451 + MLT1A1 LTR MaLR 13 365 0 4135 189 59 28 chr4 37268579 37269413 -165058934 + L1MA8 LINE L1 4327 5134 -1157 234 0 0 0 chr4 37269413 37269439 -165058908 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4135 189 59 28 chr4 37269439 37270507 -165057840 + L1MA8 LINE L1 5134 6291 0 183 80 0 0 chr4 37270911 37270936 -165057411 + (CA)n Simple_repeat Simple_repeat 2 26 0 1557 89 4 13 chr4 37272315 37272550 -165055797 - L1PA8 LINE L1 0 6172 5940 3596 110 35 12 chr4 37272557 37273120 -165055227 - L1PA13 LINE L1 -1 6162 5587 229 128 26 0 chr4 37273122 37273161 -165055186 + L1P4 LINE L1 5491 5530 -644 2033 115 0 4 chr4 37273579 37273908 -165054439 - AluSc SINE Alu 0 329 2 1604 188 3 7 chr4 37274276 37274563 -165053784 - AluJb SINE Alu -21 291 6 2062 131 10 0 chr4 37275350 37275655 -165052692 - AluSc SINE Alu -1 308 1 216 143 0 0 chr4 37275924 37275966 -165052381 + (TC)n Simple_repeat Simple_repeat 1 42 0 645 255 41 74 chr4 37277072 37277315 -165051032 - MIR SINE MIR -27 235 1 3226 212 97 46 chr4 37278087 37279128 -165049219 - LTR28 LTR ERV1 0 1755 1 214 265 20 0 chr4 37279495 37279544 -165048803 + L2 LINE L2 3249 3298 -15 495 193 25 0 chr4 37279666 37279785 -165048562 + L1MA7 LINE L1 6170 6291 0 24 0 0 0 chr4 37280294 37280318 -165048029 + AT_rich Low_complexity Low_complexity 1 24 0 970 314 80 54 chr4 37280626 37281490 -165046857 - L2 LINE L2 -1 3312 2419 1926 164 0 3 chr4 37281578 37281890 -165046457 + AluSx SINE Alu 1 311 -1 182 191 0 32 chr4 37282441 37282504 -165045843 + A-rich Low_complexity Low_complexity 5 65 0 21 0 0 0 chr4 37282692 37282713 -165045634 + AT_rich Low_complexity Low_complexity 1 21 0 287 348 80 46 chr4 37284115 37284529 -165043818 + L2 LINE L2 2464 2891 -423 23 0 0 0 chr4 37285284 37285307 -165043040 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr4 37285600 37285631 -165042716 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr4 37285706 37285743 -165042604 + AT_rich Low_complexity Low_complexity 1 37 0 21 89 0 0 chr4 37286300 37286356 -165041991 + AT_rich Low_complexity Low_complexity 1 56 0 437 299 0 24 chr4 37286496 37286623 -165041724 - MLT1F1 LTR MaLR -435 132 9 238 224 0 17 chr4 37286630 37286688 -165041659 + GA-rich Low_complexity Low_complexity 4 60 0 979 349 171 21 chr4 37286930 37288093 -165040254 - L2 LINE L2 -175 3138 1798 28 48 0 0 chr4 37288252 37288294 -165040053 + AT_rich Low_complexity Low_complexity 1 42 0 282 267 107 13 chr4 37288559 37288634 -165039713 - L2 LINE L2 -41 3231 3150 353 247 114 42 chr4 37288636 37288802 -165039545 + MER5B DNA MER1_type 1 178 0 394 181 0 0 chr4 37288980 37289052 -165039295 - L1MB3 LINE L1 -1 6182 6111 909 254 84 29 chr4 37289407 37289750 -165038597 - MLT1A1 LTR MaLR 0 365 4 253 282 14 0 chr4 37290004 37290075 -165038272 + CT-rich Low_complexity Low_complexity 4 75 0 213 39 0 0 chr4 37290785 37290811 -165037536 + (TA)n Simple_repeat Simple_repeat 2 27 0 928 222 95 100 chr4 37291845 37292738 -165035609 + LTR1B LTR ERV1 1 1020 0 25 31 0 0 chr4 37292876 37292908 -165035439 + AT_rich Low_complexity Low_complexity 1 32 0 35 24 0 0 chr4 37293356 37293398 -165034949 + AT_rich Low_complexity Low_complexity 1 42 0 218 196 0 0 chr4 37294248 37294299 -165034048 + T-rich Low_complexity Low_complexity 5 55 0 315 309 52 31 chr4 37295503 37295694 -165032653 + L1ME LINE L1 1042 1236 -5294 445 274 99 58 chr4 37295957 37296373 -165031974 + L1ME LINE L1 1495 1927 -4613 1812 116 4 8 chr4 37296628 37296896 -165031451 + AluSp SINE Alu 31 297 -16 26 64 0 0 chr4 37296922 37296969 -165031378 + AT_rich Low_complexity Low_complexity 1 47 0 355 319 59 28 chr4 37296985 37297256 -165031091 + L1ME LINE L1 2295 2616 -3981 346 265 40 7 chr4 37297274 37297425 -165030922 + L1ME LINE L1 2615 2770 -3770 290 320 150 35 chr4 37297679 37298020 -165030327 + L2 LINE L2 1718 2097 -1217 27 0 0 0 chr4 37299366 37299393 -165028954 + AT_rich Low_complexity Low_complexity 1 27 0 29 78 0 0 chr4 37299705 37299769 -165028578 + AT_rich Low_complexity Low_complexity 1 64 0 281 310 60 17 chr4 37299841 37299957 -165028390 - MIR SINE MIR -25 237 117 29 60 0 0 chr4 37300320 37300370 -165027977 + AT_rich Low_complexity Low_complexity 1 50 0 327 25 0 0 chr4 37300690 37300730 -165027617 + (CA)n Simple_repeat Simple_repeat 1 40 0 1035 267 125 35 chr4 37301004 37301847 -165026500 + L2 LINE L2 2222 3212 -101 234 91 0 0 chr4 37301963 37301996 -165026351 + (A)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr4 37302481 37302502 -165025845 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 37302902 37302925 -165025422 + AT_rich Low_complexity Low_complexity 1 23 0 186 133 0 0 chr4 37303717 37303747 -165024600 + (T)n Simple_repeat Simple_repeat 1 30 0 636 165 0 0 chr4 37305278 37305381 -165022966 - U13 snRNA snRNA -1 103 1 270 148 0 0 chr4 37305665 37305719 -165022628 + (ATG)n Simple_repeat Simple_repeat 3 56 0 221 98 24 0 chr4 37305874 37305915 -165022432 + (CA)n Simple_repeat Simple_repeat 2 43 0 305 254 26 9 chr4 37306509 37306623 -165021724 + (TA)n Simple_repeat Simple_repeat 2 117 0 601 282 37 66 chr4 37306658 37306931 -165021416 - LTR41 LTR ERVL -82 691 427 30 27 0 0 chr4 37307940 37307977 -165020370 + AT_rich Low_complexity Low_complexity 1 37 0 1478 274 100 32 chr4 37308033 37309241 -165019106 + L1ME3A LINE L1 4877 6167 -3 414 134 0 0 chr4 37309292 37309359 -165018988 + (TA)n Simple_repeat Simple_repeat 2 68 0 857 228 5 16 chr4 37309364 37309548 -165018799 - AluJb SINE Alu -30 282 101 1355 196 16 64 chr4 37310083 37310394 -165017953 - AluJb SINE Alu -14 298 3 2146 110 0 3 chr4 37311044 37311353 -165016994 - AluSq SINE Alu -5 308 1 193 241 222 0 chr4 37311353 37311407 -165016940 - MIR SINE MIR -6 256 191 239 239 55 28 chr4 37312269 37312378 -165015969 + L1M4 LINE L1 4530 4641 -1505 595 296 122 17 chr4 37312658 37312888 -165015459 - MIR SINE MIR -8 254 1 24 32 0 0 chr4 37313061 37313092 -165015255 + AT_rich Low_complexity Low_complexity 1 31 0 998 261 56 74 chr4 37313100 37313545 -165014802 - MLT1E3 LTR MaLR -91 533 97 705 193 74 0 chr4 37314689 37314865 -165013482 + MER53 DNA DNA 1 189 0 2942 196 47 12 chr4 37315866 37316529 -165011818 - L1MC2 LINE L1 -8 6336 5651 565 254 52 5 chr4 37316503 37316716 -165011631 - L1MC2 LINE L1 -794 5352 5130 * 2302 235 86 21 chr4 37316706 37317531 -165010816 - L1MC2 LINE L1 -1460 4686 3808 2999 177 16 7 chr4 37318218 37318767 -165009580 + L1PA16 LINE L1 5607 6160 -6 383 316 63 31 chr4 37319853 37320224 -165008123 + L1MEc LINE L1 2178 2517 -3698 952 147 6 6 chr4 37320316 37320473 -165007874 - AluJb SINE Alu -19 293 137 433 272 92 71 chr4 37320550 37321539 -165006808 + L1MEc LINE L1 2674 3683 -2532 2066 111 0 0 chr4 37321551 37321858 -165006489 - AluSg SINE Alu 0 307 1 302 255 179 46 chr4 37321990 37322469 -165005878 + L1MEc LINE L1 3866 4408 -1807 342 147 49 6 chr4 37322472 37322635 -165005712 + (TA)n Simple_repeat Simple_repeat 1 170 0 1974 109 3 0 chr4 37322635 37322920 -165005427 - AluSc SINE Alu -23 286 1 251 243 14 14 chr4 37322940 37323010 -165005337 + (TATG)n Simple_repeat Simple_repeat 2 71 0 1313 295 50 20 chr4 37325943 37326401 -165001946 - MLT1E2 LTR MaLR -26 600 129 2610 141 16 35 chr4 37326457 37326941 -165001406 - LTR44 LTR ERV1 -37 482 8 761 68 8 0 chr4 37326943 37327060 -165001287 + (TCTA)n Simple_repeat Simple_repeat 1 118 0 1020 243 58 0 chr4 37327061 37327304 -165001043 - MLT2D LTR ERVL -52 362 106 280 296 40 25 chr4 37327691 37327807 -165000540 + HERVL LTR ERVL 1932 2022 -3632 501 198 38 0 chr4 37327890 37327996 -165000351 - L1MD2 LINE L1 -56 6303 6194 233 176 59 0 chr4 37328766 37328817 -164999530 - MLT2B1 LTR ERVL -34 486 433 1659 172 35 0 chr4 37328821 37329106 -164999241 - AluY SINE Alu -14 297 3 386 178 29 46 chr4 37329211 37329385 -164998962 + CT-rich Low_complexity Low_complexity 4 174 0 1720 194 3 3 chr4 37330179 37330473 -164997874 + AluSx SINE Alu 1 294 -18 212 130 0 43 chr4 37330551 37330597 -164997750 + (TTTTTA)n Simple_repeat Simple_repeat 2 45 0 412 169 56 22 chr4 37331703 37331792 -164996555 - L1MC2 LINE L1 -283 6061 5970 1905 147 7 13 chr4 37331960 37332260 -164996087 + AluSq SINE Alu 1 298 -15 497 332 102 29 chr4 37333410 37333854 -164994493 + L2 LINE L2 2798 3271 -42 206 219 0 0 chr4 37333889 37333930 -164994417 + (TG)n Simple_repeat Simple_repeat 2 42 0 1243 86 0 17 chr4 37334383 37334558 -164993789 - L1PA3 LINE L1 0 6155 5984 421 222 17 0 chr4 37334884 37335001 -164993346 - L1MA10 LINE L1 0 6334 6216 239 267 0 0 chr4 37335020 37335080 -164993267 + L2 LINE L2 3006 3065 -248 1807 147 45 31 chr4 37335216 37335569 -164992778 - MSTA LTR MaLR -70 358 1 4029 139 42 10 chr4 37335572 37336254 -164992093 - L1MA2 LINE L1 -102 6202 5499 2498 330 93 24 chr4 37336290 37338463 -164989884 - L1MCb LINE L1 -1129 5435 3112 841 222 57 53 chr4 37338489 37339545 -164988802 - L1MCb LINE L1 -3653 2911 1558 2069 269 104 33 chr4 37339873 37340824 -164987523 - L1M4 LINE L1 -855 5291 4214 784 128 38 0 chr4 37340824 37340957 -164987390 - L1PA14 LINE L1 -5 6156 6019 2069 269 104 33 chr4 37340957 37341353 -164986994 - L1M4 LINE L1 -1932 4214 3848 1954 110 4 0 chr4 37341379 37341652 -164986695 + AluY SINE Alu 38 311 0 516 286 78 72 chr4 37342097 37342845 -164985502 - L1M4 LINE L1 -2323 3823 3072 580 346 33 43 chr4 37343571 37343730 -164984617 - L2 LINE L2 -68 3245 3086 1405 192 29 0 chr4 37343730 37344011 -164984336 + AluJo SINE Alu 1 289 -23 580 346 33 43 chr4 37344011 37344345 -164984002 - L2 LINE L2 -227 3086 2761 227 358 15 22 chr4 37344345 37344479 -164983868 - L2 LINE L2 -1267 2047 1915 25 0 0 0 chr4 37345930 37345955 -164982392 + AT_rich Low_complexity Low_complexity 1 25 0 1766 191 43 33 chr4 37346478 37346898 -164981449 + L1MC3 LINE L1 6653 7076 -709 3532 240 61 29 chr4 37347000 37348288 -164980059 - L1MCb LINE L1 -4849 1196 3 2867 262 95 8 chr4 37348320 37349777 -164978570 - L1ME1 LINE L1 -5 6441 4840 * 3067 290 63 38 chr4 37349775 37350998 -164977349 - L1ME1 LINE L1 -2074 4352 3061 1958 121 7 17 chr4 37350998 37351295 -164977052 + AluSg SINE Alu 1 294 -16 3067 290 63 38 chr4 37351295 37351963 -164976384 - L1ME1 LINE L1 -3365 3061 2412 25 0 0 0 chr4 37351965 37351990 -164976357 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chr4 37352184 37352223 -164976124 + AT_rich Low_complexity Low_complexity 1 39 0 226 318 48 0 chr4 37352323 37352449 -164975898 - L1ME1 LINE L1 -4199 2227 2096 387 179 3 5 chr4 37352656 37352738 -164975609 - AluJ/FLAM SINE Alu -237 65 1 609 265 100 67 chr4 37352785 37353234 -164975113 - MLT1C LTR MaLR -3 464 1 1180 265 46 14 chr4 37353759 37353884 -164974463 + L1ME2 LINE L1 4719 4839 -1307 1587 209 21 12 chr4 37353884 37354223 -164974124 + MER2 DNA MER2_type 2 343 -1 1180 265 46 14 chr4 37354223 37354512 -164973835 + L1ME2 LINE L1 4839 5146 -1000 546 229 149 68 chr4 37354585 37355036 -164973311 + L1ME2 LINE L1 5630 6293 -41 1230 253 132 64 chr4 37355304 37355719 -164972628 + L1ME2 LINE L1 4768 5153 -1011 2206 112 0 0 chr4 37355719 37356023 -164972324 + AluY SINE Alu 1 304 -7 1230 253 132 64 chr4 37356023 37356247 -164972100 + L1ME2 LINE L1 5153 5360 -804 402 21 0 0 chr4 37356247 37356294 -164972053 + (CA)n Simple_repeat Simple_repeat 2 48 0 1230 253 132 64 chr4 37356294 37356912 -164971435 + L1ME2 LINE L1 5360 6115 -49 552 274 11 26 chr4 37357215 37357405 -164970942 + MLT1A2 LTR MaLR 1 187 -187 378 329 77 45 chr4 37357522 37358081 -164970266 - L1ME1 LINE L1 -4810 1618 988 1119 217 8 17 chr4 37358298 37358533 -164969814 + AluJo SINE Alu 50 282 -30 25 0 0 0 chr4 37359330 37359355 -164968992 + AT_rich Low_complexity Low_complexity 1 25 0 2648 177 16 4 chr4 37359386 37359895 -164968452 - L1PA16 LINE L1 -9 6157 5643 428 129 6 74 chr4 37359901 37360064 -164968283 + (TA)n Simple_repeat Simple_repeat 2 153 0 258 156 0 0 chr4 37360064 37360109 -164968238 - L1PA16 LINE L1 -530 5635 5591 1378 372 122 8 chr4 37360110 37360494 -164967853 - MSTA LTR MaLR 0 428 1 5826 202 33 14 chr4 37360495 37362352 -164965995 - L1P4 LINE L1 -573 5593 3697 3295 274 16 16 chr4 37362345 37363491 -164964856 + L1P4 LINE L1 2542 3687 -2459 * 23 54 0 0 chr4 37363497 37363534 -164964813 + AT_rich Low_complexity Low_complexity 1 37 0 2056 130 3 12 chr4 37363889 37364219 -164964128 + HERVH LTR ERV1 2604 2930 -4783 375 140 0 0 chr4 37364220 37364277 -164964070 - LTR7 LTR ERV1 0 450 394 745 204 7 0 chr4 37364278 37364425 -164963922 - HERVH LTR ERV1 -5751 1962 1815 * 2941 107 27 13 chr4 37364416 37364894 -164963453 + HERVH LTR ERV1 7229 7713 0 1369 174 99 67 chr4 37364894 37365330 -164963017 + LTR7 LTR ERV1 1 450 0 11788 153 14 28 chr4 37365331 37367500 -164960847 - HERVH LTR ERV1 -4783 2930 793 1096 200 14 6 chr4 37367575 37367970 -164960377 - HERVH LTR ERV1 -7267 446 12 1102 199 107 65 chr4 37367982 37368414 -164959933 - LTR7 LTR ERV1 0 450 1 22 0 0 0 chr4 37369217 37369239 -164959108 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr4 37369290 37369324 -164959023 + AT_rich Low_complexity Low_complexity 1 34 0 31 44 0 0 chr4 37370485 37370530 -164957817 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr4 37371087 37371115 -164957232 + AT_rich Low_complexity Low_complexity 1 28 0 878 304 50 22 chr4 37371394 37371462 -164956885 - L1MEc LINE L1 -2051 4890 4825 1546 271 72 35 chr4 37371462 37372034 -164956313 - MLT1E LTR MaLR 0 593 1 878 304 50 22 chr4 37372034 37372511 -164955836 - L1MEc LINE L1 -2116 4825 4330 * 1048 282 81 39 chr4 37372508 37373411 -164954936 - L1MEc LINE L1 -3747 3194 2292 495 300 69 28 chr4 37373482 37373945 -164954402 - L1MEc LINE L1 -4945 1996 1515 * 511 274 37 11 chr4 37373920 37374110 -164954237 - L1MEc LINE L1 -6212 211 17 478 337 27 34 chr4 37374396 37374693 -164953654 - L1MEc LINE L1 -6024 372 78 221 250 0 0 chr4 37375666 37375718 -164952629 - L2 LINE L2 0 3313 3262 23 101 0 0 chr4 37378057 37378136 -164950211 + AT_rich Low_complexity Low_complexity 1 79 0 814 299 49 55 chr4 37378187 37378998 -164949349 + L1MB1 LINE L1 1596 2236 -5250 3001 236 44 13 chr4 37379112 37379858 -164948489 + L1MB1 LINE L1 2202 2970 -4516 3892 235 47 32 chr4 37379868 37382686 -164945661 + L1MB1 LINE L1 2889 5663 -1924 189 0 0 0 chr4 37382686 37382707 -164945640 + (CA)n Simple_repeat Simple_repeat 2 22 0 3892 235 47 32 chr4 37382707 37383567 -164944780 + L1MB1 LINE L1 5663 6509 -1078 2031 123 34 0 chr4 37383567 37383859 -164944488 + AluSx SINE Alu 1 302 -10 3892 235 47 32 chr4 37383859 37383906 -164944441 + L1MB1 LINE L1 6509 7585 -2 257 223 284 19 chr4 37384049 37384264 -164944083 - L1M4 LINE L1 -3452 2694 2423 3248 177 148 18 chr4 37384829 37385602 -164942745 + MER52C LTR ERV1 406 1278 0 834 308 106 16 chr4 37385743 37386185 -164942162 - L1ME1 LINE L1 -6 6160 5679 330 139 0 0 chr4 37436195 37436267 -164892080 + (TA)n Simple_repeat Simple_repeat 2 73 0 313 267 58 0 chr4 37436268 37436354 -164891993 + L1MC4 LINE L1 6613 6703 -1339 744 179 0 0 chr4 37436355 37436614 -164891733 + (TA)n Simple_repeat Simple_repeat 1 259 0 4207 99 2 2 chr4 37436701 37437285 -164891062 + HERVL-A1 LTR ERVL 1 584 -5070 969 191 0 0 chr4 37437528 37437716 -164890631 - L1PA16 LINE L1 -1 6165 5978 910 121 0 0 chr4 37437717 37437849 -164890498 + L1PA16 LINE L1 5840 5971 -195 21 0 0 0 chr4 37438141 37438162 -164890185 + AT_rich Low_complexity Low_complexity 1 21 0 28223 161 29 30 chr4 37438627 37443596 -164884751 + HERVL-A1 LTR ERVL 793 5758 -6 2807 119 5 2 chr4 37443597 37443999 -164884348 + MLT2A1 LTR ERVL 3 405 -39 181 85 68 34 chr4 37444001 37444060 -164884287 + (TATAA)n Simple_repeat Simple_repeat 5 65 0 704 110 0 0 chr4 37444070 37444170 -164884177 + HERVL LTR ERVL 2764 2863 -2791 266 152 0 0 chr4 37444176 37444222 -164884125 + MLT2A1 LTR ERVL 399 444 0 2927 211 46 31 chr4 37444223 37444430 -164883917 - MLT1A1-int LTR MaLR -978 757 555 1875 177 0 0 chr4 37444430 37444729 -164883618 - AluSx SINE Alu -9 303 5 2927 211 46 31 chr4 37444729 37445174 -164883173 - MLT1A1-int LTR MaLR -1180 555 95 253 121 0 0 chr4 37445176 37445209 -164883138 + MLT1A1 LTR MaLR 261 293 -72 327 228 0 13 chr4 37445353 37445432 -164882915 - MLT1A1-int LTR MaLR -1656 79 2 934 247 37 4 chr4 37445465 37445708 -164882639 - MLT1A1 LTR MaLR -114 251 1 558 268 46 0 chr4 37445711 37445864 -164882483 + MIR SINE MIR 94 253 -9 256 364 0 10 chr4 37447058 37447157 -164881190 - MER5A DNA MER1_type -3 186 89 210 274 8 103 chr4 37447363 37447480 -164880867 + MER5A DNA MER1_type 9 114 -75 1016 152 71 3 chr4 37448877 37449074 -164879273 - L1MC/D LINE L1 -453 5789 5585 * 2017 210 12 2 chr4 37449065 37449703 -164878644 + L1MC/D LINE L1 4978 5620 -724 1986 118 3 13 chr4 37449989 37450293 -164878054 - AluY SINE Alu -10 301 1 21 0 0 0 chr4 37450551 37450572 -164877775 + AT_rich Low_complexity Low_complexity 1 21 0 391 219 9 0 chr4 37450865 37450970 -164877377 + LTR37A LTR ERV1 319 424 -2 386 208 28 0 chr4 37451160 37451259 -164877088 - MER61E LTR ERV1 -95 699 377 2303 74 0 10 chr4 37451259 37451570 -164876777 - L1PA7 LINE L1 0 6154 5847 23 92 0 0 chr4 37451748 37451813 -164876534 + AT_rich Low_complexity Low_complexity 1 65 0 309 169 36 0 chr4 37451884 37451967 -164876380 + (TA)n Simple_repeat Simple_repeat 2 87 0 208 303 0 0 chr4 37452535 37452611 -164875736 + T-rich Low_complexity Low_complexity 1 76 0 786 238 117 75 chr4 37453143 37453580 -164874767 + MSTB2 LTR MaLR 3 457 0 288 333 128 6 chr4 37453814 37453994 -164874353 + MIR SINE MIR 58 259 -3 22 0 0 0 chr4 37454042 37454064 -164874283 + AT_rich Low_complexity Low_complexity 1 22 0 441 319 25 71 chr4 37454240 37454563 -164873784 + MLT1H LTR MaLR 235 542 -7 2695 50 0 3 chr4 37454584 37454926 -164873421 + L1PA5 LINE L1 5813 6153 -1 561 301 151 21 chr4 37456796 37457173 -164871174 + LTR33A LTR ERVL 106 514 -9 448 314 100 49 chr4 37457610 37457776 -164870571 + L1MC4a LINE L1 5264 5420 -2388 2363 77 0 3 chr4 37457776 37458086 -164870261 + AluY SINE Alu 1 309 -2 448 314 100 49 chr4 37458086 37458549 -164869798 + L1MC4a LINE L1 5420 5925 -1883 27 62 0 0 chr4 37458565 37458613 -164869734 + AT_rich Low_complexity Low_complexity 1 48 0 46 92 0 0 chr4 37458744 37458874 -164869473 + AT_rich Low_complexity Low_complexity 1 130 0 198 398 21 11 chr4 37460105 37460198 -164868149 - L2 LINE L2 -10 3262 3169 31 26 0 0 chr4 37460224 37460262 -164868085 + AT_rich Low_complexity Low_complexity 1 38 0 244 312 92 0 chr4 37460913 37461022 -164867325 + L1ME LINE L1 5548 5666 -455 24 0 0 0 chr4 37461379 37461403 -164866944 + AT_rich Low_complexity Low_complexity 1 24 0 2177 70 7 11 chr4 37461416 37461748 -164866599 - AluY SINE Alu 0 331 1 223 170 0 0 chr4 37461955 37462002 -164866345 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1068 193 14 9 chr4 37462330 37462543 -164865804 - Tigger2 DNA MER2_type 0 2718 2505 4690 131 40 26 chr4 37462544 37463341 -164865006 + L1PA12 LINE L1 5361 6168 0 3936 173 33 0 chr4 37463424 37464153 -164864194 - Tigger2 DNA MER2_type -1965 753 1 24 53 0 0 chr4 37464968 37465006 -164863341 + AT_rich Low_complexity Low_complexity 1 38 0 211 296 136 45 chr4 37465971 37466103 -164862244 + L2 LINE L2 3145 3288 -25 1340 140 9 9 chr4 37467076 37467297 -164861050 - AluSg/x SINE Alu 0 312 92 2739 116 36 58 chr4 37467297 37467798 -164860549 + LTR2B LTR ERV1 1 490 0 41326 205 15 8 chr4 37467798 37475557 -164852790 + HERVE LTR ERV1 1 7812 -1 2606 124 51 55 chr4 37475557 37476049 -164852298 + LTR2B LTR ERV1 1 490 0 585 109 33 0 chr4 37476049 37476141 -164852206 - AluJ/FLAM SINE Alu -217 95 1 25 51 0 0 chr4 37476594 37476633 -164851714 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr4 37476775 37476803 -164851544 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 37476890 37476920 -164851427 + AT_rich Low_complexity Low_complexity 1 30 0 356 157 29 29 chr4 37476974 37477146 -164851201 + (TA)n Simple_repeat Simple_repeat 1 172 0 310 175 30 18 chr4 37477158 37477324 -164851023 + (TA)n Simple_repeat Simple_repeat 1 168 0 277 231 29 0 chr4 37477337 37477510 -164850837 + (TA)n Simple_repeat Simple_repeat 1 178 0 2185 126 25 14 chr4 37477983 37478340 -164850007 - L1PA16 LINE L1 0 6166 5806 1003 328 94 22 chr4 37478366 37478948 -164849399 + MLT2E LTR ERVL 1 624 -4 289 368 36 18 chr4 37479122 37479288 -164849059 + MER5B DNA MER1_type 7 175 -3 186 324 14 0 chr4 37479366 37479437 -164848910 + MIR SINE MIR 90 161 -101 326 260 41 47 chr4 37479792 37479961 -164848386 - L2 LINE L2 -50 3263 3096 23 0 0 0 chr4 37480152 37480175 -164848172 + AT_rich Low_complexity Low_complexity 1 23 0 1283 294 105 42 chr4 37480582 37481216 -164847131 + L1M4 LINE L1 3945 4538 -1608 210 71 0 0 chr4 37481216 37481244 -164847103 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1283 294 105 42 chr4 37481244 37481975 -164846372 + L1M4 LINE L1 4538 5395 -751 2225 90 0 3 chr4 37481979 37482269 -164846078 - AluY SINE Alu -22 289 1 1558 185 0 53 chr4 37482549 37482852 -164845495 - MER1B DNA MER1_type 0 339 53 1544 156 0 113 chr4 37482941 37483287 -164845060 - AluSx SINE Alu 0 310 1 314 322 116 9 chr4 37483894 37484073 -164844274 - MIR SINE MIR -66 196 1 578 237 68 51 chr4 37484602 37484838 -164843509 - MER92B LTR ERV1 -2 634 395 21 0 0 0 chr4 37485515 37485536 -164842811 + AT_rich Low_complexity Low_complexity 1 21 0 363 193 18 9 chr4 37485694 37485808 -164842539 + (TA)n Simple_repeat Simple_repeat 1 115 0 21 0 0 0 chr4 37486377 37486398 -164841949 + AT_rich Low_complexity Low_complexity 1 21 0 289 272 12 49 chr4 37486673 37486754 -164841593 + Tigger7 DNA MER2_type 2414 2491 0 2075 188 28 12 chr4 37487072 37487497 -164840850 + Tigger2a DNA MER2_type 1 432 -2 493 244 0 0 chr4 37487510 37487600 -164840747 + Tigger2 DNA MER2_type 2628 2717 -1 186 43 0 0 chr4 37487910 37487933 -164840414 + (ATG)n Simple_repeat Simple_repeat 2 24 0 630 291 112 68 chr4 37487994 37488405 -164839942 + MLT1H1 LTR MaLR 6 435 -132 273 285 80 88 chr4 37488597 37488734 -164839613 - MIR SINE MIR -21 241 106 538 303 39 0 chr4 37488999 37489154 -164839193 + L2 LINE L2 3106 3266 -6 26 0 0 0 chr4 37490485 37490511 -164837836 + AT_rich Low_complexity Low_complexity 1 26 0 2196 111 39 31 chr4 37490828 37491188 -164837159 - THE1B LTR MaLR -1 363 1 1140 214 82 4 chr4 37492056 37492174 -164836173 + AluJo SINE Alu 1 108 -194 360 64 0 0 chr4 37492174 37492221 -164836126 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1140 214 82 4 chr4 37492221 37492382 -164835965 + AluJo SINE Alu 108 302 0 222 37 0 0 chr4 37492701 37492728 -164835619 + (CA)n Simple_repeat Simple_repeat 2 28 0 1320 186 63 11 chr4 37493258 37493543 -164834804 - AluJb SINE Alu -12 300 1 299 257 100 64 chr4 37493559 37493699 -164834648 - L2 LINE L2 -62 3251 3107 244 256 26 0 chr4 37493709 37493787 -164834560 + MER116 DNA Mariner 1 80 0 1522 323 113 45 chr4 37493814 37495482 -164832865 - L2 LINE L2 -271 3042 1255 186 217 0 83 chr4 37496706 37496766 -164831581 - L3 LINE CR1 -241 1336 1282 513 316 37 53 chr4 37497443 37497766 -164830581 - L2 LINE L2 0 3313 2996 988 244 16 35 chr4 37497792 37498050 -164830297 + MLT1E LTR MaLR 341 593 0 795 269 26 70 chr4 37498054 37498221 -164830126 - L2 LINE L2 -1874 1440 1291 653 188 0 8 chr4 37498221 37498372 -164829975 + FLAM_A SINE Alu 1 150 0 795 269 26 70 chr4 37498372 37498515 -164829832 - L2 LINE L2 -2023 1291 1143 1267 344 14 24 chr4 37498537 37499113 -164829234 - L2 LINE L2 -2474 840 271 942 267 55 6 chr4 37499152 37499478 -164828869 - MER90 LTR ERV1 -233 342 1 285 296 0 45 chr4 37499585 37499673 -164828674 - L2 LINE L2 -3123 191 108 25 0 0 0 chr4 37499806 37499831 -164828516 + AT_rich Low_complexity Low_complexity 1 25 0 27 49 0 0 chr4 37500391 37500432 -164827915 + AT_rich Low_complexity Low_complexity 1 41 0 5954 196 10 6 chr4 37500711 37501930 -164826417 - L1PA14 LINE L1 -1056 5090 3867 4712 142 33 56 chr4 37501935 37502218 -164826129 + L1PA14 LINE L1 5086 5374 -787 432 97 0 0 chr4 37502218 37502280 -164826067 + (TA)n Simple_repeat Simple_repeat 2 63 0 4712 142 33 56 chr4 37502280 37503097 -164825250 + L1PA14 LINE L1 5374 6161 0 26 0 0 0 chr4 37503118 37503144 -164825203 + AT_rich Low_complexity Low_complexity 1 26 0 1140 189 39 31 chr4 37503153 37503439 -164824908 - L1MA4 LINE L1 -15 6285 5998 609 230 97 92 chr4 37503579 37503820 -164824527 + L1MC5 LINE L1 7419 7658 -303 2228 113 0 0 chr4 37503820 37504121 -164824226 - AluSg SINE Alu -9 301 1 609 230 97 92 chr4 37504121 37504387 -164823960 + L1MC5 LINE L1 7658 7928 -33 287 321 99 29 chr4 37504945 37505188 -164823159 + L3 LINE CR1 1162 1421 -156 21 0 0 0 chr4 37505220 37505241 -164823106 + AT_rich Low_complexity Low_complexity 1 21 0 339 85 0 0 chr4 37505621 37505668 -164822679 + (CA)n Simple_repeat Simple_repeat 1 47 0 1378 220 99 62 chr4 37505715 37506211 -164822136 - L1MB8 LINE L1 -14 6164 5659 558 313 200 52 chr4 37506212 37507359 -164820988 + L2 LINE L2 857 2172 -1142 413 371 24 6 chr4 37507368 37507538 -164820809 - MER5B DNA MER1_type 0 178 6 213 339 100 23 chr4 37507542 37507672 -164820675 + L2 LINE L2 2178 2317 -997 32 26 0 0 chr4 37508474 37508513 -164819834 + AT_rich Low_complexity Low_complexity 1 39 0 773 197 0 0 chr4 37508513 37508645 -164819702 - FLAM_C SINE Alu 0 133 2 230 367 94 11 chr4 37508719 37508899 -164819448 - L2 LINE L2 -660 2654 2460 780 315 80 17 chr4 37508986 37509338 -164819009 - L2 LINE L2 -1428 1886 1513 886 264 0 13 chr4 37509439 37509666 -164818681 + MER58A DNA MER1_type 1 224 0 5489 179 11 8 chr4 37510200 37512176 -164816171 - L1PA15 LINE L1 -5 6160 4179 507 217 8 9 chr4 37512169 37512309 -164816038 - L1PA15 LINE L1 -3853 2293 2151 * 499 182 10 0 chr4 37512322 37512421 -164815926 + L1P LINE L1 1842 1941 -4205 23 0 0 0 chr4 37512932 37512955 -164815392 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 37513626 37513651 -164814696 + AT_rich Low_complexity Low_complexity 1 25 0 243 346 19 0 chr4 37513676 37513780 -164814567 + Charlie8 DNA MER1_type 124 229 -2188 35 0 0 0 chr4 37513951 37513986 -164814361 + AT_rich Low_complexity Low_complexity 1 35 0 1787 151 4 0 chr4 37514224 37514496 -164813851 - AluSx SINE Alu -39 273 1 201 371 186 0 chr4 37514764 37514888 -164813459 - MIR3 SINE MIR -34 174 28 1432 158 0 121 chr4 37514926 37515256 -164813091 + AluJb SINE Alu 1 290 -12 30 0 0 0 chr4 37515868 37515898 -164812449 + AT_rich Low_complexity Low_complexity 1 30 0 244 245 0 0 chr4 37516054 37516103 -164812244 + L2 LINE L2 3257 3305 -8 1006 275 75 21 chr4 37516473 37516898 -164811449 - L1ME3A LINE L1 -5 6165 5718 256 274 0 0 chr4 37516905 37516956 -164811391 - Tigger5 DNA MER2_type 0 2323 2273 282 222 0 0 chr4 37516985 37517039 -164811308 - Tigger5 DNA MER2_type -2244 79 26 821 267 72 65 chr4 37517050 37517327 -164811020 - L1P3 LINE L1 -459 5711 5434 225 65 0 0 chr4 37517335 37517366 -164810981 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1411 35 0 2 chr4 37517367 37517609 -164810738 - AluY SINE Alu -32 279 1 1996 119 0 19 chr4 37517846 37518164 -164810183 - AluSx SINE Alu 0 312 1 23 0 0 0 chr4 37518453 37518476 -164809871 + AT_rich Low_complexity Low_complexity 1 23 0 736 343 67 35 chr4 37519627 37520061 -164808286 - MLT1J LTR MaLR -63 448 1 237 33 0 0 chr4 37520114 37520144 -164808203 + (CA)n Simple_repeat Simple_repeat 1 30 0 342 67 0 0 chr4 37520163 37520208 -164808139 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 1320 219 28 10 chr4 37520210 37520498 -164807849 + AluJo SINE Alu 1 293 -19 331 385 34 13 chr4 37521130 37521369 -164806978 + L1MC4a LINE L1 5678 5921 -1887 1593 185 91 40 chr4 37522052 37522457 -164805890 - MSTA LTR MaLR -2 426 1 8789 195 13 4 chr4 37522457 37524080 -164804267 - MSTA-int LTR MaLR 0 1651 15 1821 209 63 21 chr4 37524093 37524476 -164803871 - MSTA LTR MaLR 0 428 30 1868 220 55 21 chr4 37525805 37526241 -164802106 - MLT1D LTR MaLR -51 454 4 3557 114 0 14 chr4 37526258 37526776 -164801571 + MER9 LTR ERVK 1 511 0 20099 73 30 26 chr4 37526776 37527537 -164800810 + HERVK9 LTR ERVK 1 758 -5158 188 197 0 98 chr4 37527537 37527598 -164800749 + MER5B DNA MER1_type 55 109 -69 20099 73 30 26 chr4 37527598 37529552 -164798795 + HERVK9 LTR ERVK 758 2786 -3130 1784 82 0 0 chr4 37529552 37529783 -164798564 + HERVK9 LTR ERVK 3711 3941 -1975 * 7349 119 4 5 chr4 37529782 37530836 -164797511 + HERVK9 LTR ERVK 4582 5634 -282 2283 112 9 10 chr4 37530861 37531215 -164797132 + HERVK9 LTR ERVK 5635 5916 0 3670 98 0 14 chr4 37531215 37531733 -164796614 + MER9 LTR ERVK 1 511 0 1240 175 50 12 chr4 37531743 37531983 -164796364 + MER101B LTR ERV1 1 249 -321 308 236 43 93 chr4 37532308 37532448 -164795899 + L2 LINE L2 3179 3311 -2 249 139 0 0 chr4 37533115 37533158 -164795189 + (CA)n Simple_repeat Simple_repeat 2 44 0 1184 220 89 94 chr4 37533182 37533596 -164794751 + MLT2B1 LTR ERVL 1 412 -2 287 318 24 47 chr4 37533704 37533874 -164794473 + MER69 DNA AcHobo 1 166 -2360 1859 147 0 0 chr4 37533944 37534217 -164794130 + AluSg SINE Alu 36 308 -2 183 204 0 0 chr4 37534620 37534669 -164793678 + GA-rich Low_complexity Low_complexity 1 49 0 231 388 129 0 chr4 37535546 37535662 -164792685 + MER5A DNA MER1_type 1 131 -58 2106 120 60 23 chr4 37536239 37536590 -164791757 - THE1B LTR MaLR 0 364 1 209 108 27 0 chr4 37536800 37536837 -164791510 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 24 53 0 0 chr4 37538011 37538049 -164790298 + AT_rich Low_complexity Low_complexity 1 38 0 56 16 0 0 chr4 37538478 37538541 -164789806 + AT_rich Low_complexity Low_complexity 1 63 0 934 258 94 52 chr4 37538618 37539211 -164789136 + MLT1E3 LTR MaLR 1 624 0 30 59 0 0 chr4 37539227 37539278 -164789069 + AT_rich Low_complexity Low_complexity 1 51 0 2115 88 0 47 chr4 37539320 37539639 -164788708 - AluY SINE Alu -7 304 1 510 270 121 27 chr4 37540814 37541303 -164787044 - MLT1E1 LTR MaLR -9 645 1 271 351 73 25 chr4 37541464 37541709 -164786638 + L2 LINE L2 2244 2500 -814 312 185 65 54 chr4 37541753 37541845 -164786502 + MLT1J2 LTR MaLR 342 434 -16 3110 206 13 23 chr4 37542444 37543127 -164785220 + L1MC3 LINE L1 7092 7767 -18 1148 228 12 46 chr4 37543144 37543249 -164785098 + L1MD2 LINE L1 6045 6152 -207 369 0 0 0 chr4 37543249 37543290 -164785057 + (CA)n Simple_repeat Simple_repeat 1 41 0 1148 228 12 46 chr4 37543290 37543509 -164784838 + L1MD2 LINE L1 6152 6358 -1 1916 240 91 61 chr4 37543509 37544843 -164783504 + L1ME1 LINE L1 4649 6022 -144 2034 152 32 16 chr4 37545158 37545527 -164782820 + THE1C LTR MaLR 1 375 0 873 202 12 0 chr4 37545776 37545944 -164782403 - MLT2B1 LTR ERVL 0 520 351 526 182 10 10 chr4 37545960 37546059 -164782288 + FLAM_A SINE Alu 33 131 -11 724 248 35 0 chr4 37546077 37546222 -164782125 - MLT2B1 LTR ERVL -191 329 180 36 0 0 0 chr4 37546237 37546273 -164782074 + AT_rich Low_complexity Low_complexity 1 36 0 207 69 0 0 chr4 37546274 37546303 -164782044 + (TATG)n Simple_repeat Simple_repeat 2 30 0 370 252 53 15 chr4 37546311 37546442 -164781905 + L1M4 LINE L1 4809 4944 -1202 953 147 31 0 chr4 37546479 37546642 -164781705 - MLT2B1 LTR ERVL -350 170 3 1097 342 79 23 chr4 37547530 37548384 -164779963 + L2 LINE L2 2406 3305 -8 226 277 129 0 chr4 37549269 37549370 -164778977 - MIR SINE MIR -61 201 88 223 265 45 91 chr4 37551758 37551890 -164776457 + L2 LINE L2 3098 3223 -90 263 213 0 0 chr4 37551903 37551950 -164776397 + MLT2D LTR ERVL 307 353 -61 265 222 49 0 chr4 37551955 37552036 -164776311 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 289 167 76 15 chr4 37552036 37552102 -164776245 + Ricksha DNA DNA 845 914 -1132 355 83 0 0 chr4 37553790 37553838 -164774509 - MADE1 DNA Mariner -32 48 1 216 182 0 0 chr4 37555661 37555705 -164772642 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 2440 237 106 18 chr4 37556088 37557047 -164771300 + Looper DNA T2_type 16 1059 -499 548 237 26 0 chr4 37557086 37557200 -164771147 + Tigger3(Golem) DNA MER2_type 1 117 -2912 1672 148 35 45 chr4 37557200 37557665 -164770682 + MSTA LTR MaLR 1 412 -14 261 244 105 0 chr4 37557873 37557959 -164770388 + MLT1D LTR MaLR 1 95 -410 1800 213 53 8 chr4 37557964 37558340 -164770007 + MSTD LTR MaLR 4 396 0 5582 253 81 33 chr4 37558349 37558615 -164769732 + MSTA-int LTR MaLR 15 267 -1468 2815 134 14 5 chr4 37558615 37559039 -164769308 + MSTA LTR MaLR 1 428 0 5582 253 81 33 chr4 37559039 37560408 -164767939 + MSTA-int LTR MaLR 267 1729 -6 1374 246 102 8 chr4 37560413 37560775 -164767572 + MSTD LTR MaLR 1 396 0 873 235 119 18 chr4 37560775 37561052 -164767295 + MLT1D LTR MaLR 93 397 -108 316 167 0 30 chr4 37561045 37561111 -164767236 + MLT1D LTR MaLR 558 621 -3 * 197 330 55 18 chr4 37561825 37561934 -164766413 - L2 LINE L2 0 3272 3160 247 366 81 21 chr4 37562013 37562199 -164766148 + MIR SINE MIR 32 228 -34 23 0 0 0 chr4 37563555 37563578 -164764769 + AT_rich Low_complexity Low_complexity 1 23 0 3440 136 34 2 chr4 37564579 37565139 -164763208 + L1PA11 LINE L1 5597 6174 0 241 346 65 17 chr4 37565151 37565382 -164762965 + HAL1b LINE L1 688 929 -419 23 33 0 0 chr4 37565413 37565443 -164762904 + AT_rich Low_complexity Low_complexity 1 30 0 3273 201 27 22 chr4 37565754 37566484 -164761863 - L1MA8 LINE L1 -6 6285 5552 468 176 12 0 chr4 37566502 37566587 -164761760 - L1MA8 LINE L1 -1156 4990 4905 * 894 92 15 0 chr4 37566585 37566715 -164761632 - L1MA8 LINE L1 -1834 4312 4181 24 32 0 0 chr4 37567518 37567549 -164760798 + AT_rich Low_complexity Low_complexity 1 31 0 12059 225 21 14 chr4 37567877 37569816 -164758531 + L1PA13 LINE L1 1 2001 -4796 6691 83 0 16 chr4 37569816 37571459 -164756888 + L1PA8 LINE L1 4548 6163 -9 12059 225 21 14 chr4 37571459 37572980 -164755367 + L1PA13 LINE L1 2001 3510 -3287 635 243 7 3 chr4 37572974 37573163 -164755184 + L1P LINE L1 2700 2886 -3260 * 5226 148 11 0 chr4 37573169 37574194 -164754153 + L1PA14 LINE L1 5047 6080 -81 251 299 11 0 chr4 37574195 37574282 -164754065 + (TA)n Simple_repeat Simple_repeat 1 88 0 1486 183 0 14 chr4 37574415 37574699 -164753648 + AluJo SINE Alu 21 300 -12 21 57 0 0 chr4 37574868 37574903 -164753444 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 37575823 37575844 -164752503 + AT_rich Low_complexity Low_complexity 1 21 0 268 255 0 51 chr4 37576150 37576248 -164752099 + GA-rich Low_complexity Low_complexity 4 96 0 2720 187 14 4 chr4 37576740 37577238 -164751109 + LTR22 LTR ERVK 1 503 -77 238 236 110 143 chr4 37577449 37577686 -164750661 + L1M4 LINE L1 644 872 -5670 218 173 39 0 chr4 37577724 37577776 -164750571 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 1456 262 41 39 chr4 37577855 37578726 -164749621 + L1M4 LINE L1 986 1861 -4785 321 26 0 0 chr4 37578809 37578847 -164749500 + (TG)n Simple_repeat Simple_repeat 1 38 0 2279 131 19 6 chr4 37578852 37579211 -164749136 - THE1B LTR MaLR 0 364 1 233 371 0 0 chr4 37579778 37579867 -164748480 - L2 LINE L2 -5 3308 3220 3936 224 31 27 chr4 37579891 37580926 -164747421 - L1MC3 LINE L1 -715 7070 6032 768 280 84 17 chr4 37580921 37581273 -164747074 - L1MCa LINE L1 -5676 549 46 * 184 229 131 16 chr4 37581679 37581740 -164746607 - L2 LINE L2 -4 3309 3242 21 57 0 0 chr4 37583289 37583324 -164745023 + AT_rich Low_complexity Low_complexity 1 35 0 195 292 79 56 chr4 37584633 37584722 -164743625 + MER5B DNA MER1_type 8 98 -80 201 121 0 0 chr4 37585530 37585563 -164742784 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 331 279 121 0 chr4 37585567 37585707 -164742640 - L1MC4 LINE L1 -1340 6702 6546 1790 189 46 3 chr4 37586077 37586427 -164741920 - MLT1A1 LTR MaLR 0 365 1 2512 241 55 115 chr4 37586427 37587091 -164741256 - MLT1A1-int LTR MaLR 0 1735 1155 4490 46 7 4 chr4 37587091 37587652 -164740695 - L1PA5 LINE L1 -2 6152 5590 2512 241 55 115 chr4 37587652 37588032 -164740315 - MLT1A1-int LTR MaLR -580 1155 754 1266 130 0 0 chr4 37588032 37588224 -164740123 + MLT2A1 LTR ERVL 1 192 -252 1034 224 4 12 chr4 37639397 37639652 -164688695 - AluSx SINE Alu -59 253 1 214 212 47 24 chr4 37640582 37640667 -164687680 + (TATATG)n Simple_repeat Simple_repeat 5 91 0 283 350 84 7 chr4 37642557 37642700 -164685647 + L3 LINE CR1 1232 1385 -192 1675 151 0 14 chr4 37642749 37643033 -164685314 + AluY SINE Alu 1 280 -31 624 347 19 0 chr4 37643200 37643416 -164684931 + MIR SINE MIR 22 241 -21 3399 32 0 0 chr4 37643722 37644128 -164684219 - L1PA4 LINE L1 0 6155 5750 2258 103 0 3 chr4 37644363 37644663 -164683684 + AluSx SINE Alu 1 299 -13 23 33 0 0 chr4 37644944 37644974 -164683373 + AT_rich Low_complexity Low_complexity 1 30 0 303 166 20 40 chr4 37646010 37646161 -164682186 + (TTATA)n Simple_repeat Simple_repeat 1 148 0 2259 100 0 3 chr4 37648129 37648430 -164679917 - AluSc SINE Alu -9 300 1 623 320 93 22 chr4 37648801 37649261 -164679086 + HsTC2a DNA Tc2 44 536 -208 330 118 0 0 chr4 37649262 37649313 -164679034 - MADE1 DNA Mariner 0 80 30 279 277 0 0 chr4 37649369 37649434 -164678913 + MIR SINE MIR 173 237 -25 326 303 45 39 chr4 37649444 37649599 -164678748 - MIR SINE MIR -105 157 2 455 343 53 5 chr4 37650292 37650499 -164677848 + L2 LINE L2 2934 3150 -163 1364 133 0 19 chr4 37650524 37650735 -164677612 + MSTA LTR MaLR 220 426 -2 276 257 46 55 chr4 37650764 37650873 -164677474 + L2 LINE L2 3148 3255 -58 360 0 0 0 chr4 37650939 37650979 -164677368 + (TG)n Simple_repeat Simple_repeat 2 41 0 2005 138 0 3 chr4 37653705 37653995 -164674352 - AluSg SINE Alu -19 291 3 484 292 65 6 chr4 37655979 37656147 -164672200 + MIR SINE MIR 71 248 -14 245 98 24 0 chr4 37656498 37656539 -164671808 - MER54A LTR ERVL -2 899 858 1268 156 9 4 chr4 37656550 37656781 -164671566 - L1PA16 LINE L1 -10 6156 5925 1162 195 18 0 chr4 37656831 37657052 -164671295 - MER54B LTR ERVL -30 763 539 323 185 33 65 chr4 37657184 37657276 -164671071 - MER54B LTR ERVL -224 569 481 1841 59 98 0 chr4 37658193 37658447 -164669900 + AluY SINE Alu 1 279 -32 498 33 0 0 chr4 37658447 37658507 -164669840 + (GA)n Simple_repeat Simple_repeat 1 60 0 2294 100 3 0 chr4 37659893 37660202 -164668145 + AluSp SINE Alu 1 310 -3 243 331 71 26 chr4 37660670 37660824 -164667523 - MIR SINE MIR -30 232 72 35 54 0 0 chr4 37661565 37661621 -164666726 + AT_rich Low_complexity Low_complexity 1 56 0 220 300 62 0 chr4 37661909 37661989 -164666358 + L2 LINE L2 1902 1986 -1328 1005 171 6 0 chr4 37661991 37662161 -164666186 + FRAM SINE Alu 1 163 -13 1158 50 0 0 chr4 37662228 37662369 -164665978 - L1PA3 LINE L1 -3 6152 6012 1051 257 24 10 chr4 37662524 37662708 -164665639 + MLT1A2 LTR MaLR 1 192 -182 279 0 0 0 chr4 37662708 37662739 -164665608 + (TC)n Simple_repeat Simple_repeat 2 32 0 1051 257 24 10 chr4 37662739 37662850 -164665497 + MLT1A2 LTR MaLR 192 300 -74 234 0 0 0 chr4 37662853 37662879 -164665468 + (TA)n Simple_repeat Simple_repeat 2 27 0 1215 98 0 27 chr4 37662882 37663065 -164665282 + AluSq SINE Alu 31 208 -105 445 330 52 11 chr4 37663348 37663539 -164664808 + MIR SINE MIR 20 218 -44 1996 131 0 44 chr4 37663705 37664026 -164664321 - AluSx SINE Alu -3 309 3 752 349 124 18 chr4 37664028 37664735 -164663612 + L2 LINE L2 1751 2532 -782 1495 302 61 33 chr4 37664785 37665358 -164662989 + MLT1G1 LTR MaLR 7 595 0 188 391 23 16 chr4 37665370 37665498 -164662849 + L2 LINE L2 2596 2724 -590 1461 134 0 57 chr4 37665865 37666127 -164662220 - Tigger5 DNA MER2_type 0 2323 2077 394 298 98 4 chr4 37666230 37666465 -164661882 - L1ME2 LINE L1 -163 5935 5679 367 285 109 78 chr4 37666471 37666812 -164661535 - L1ME2 LINE L1 -2098 3982 3653 2495 65 0 3 chr4 37666812 37667119 -164661228 - AluY SINE Alu -5 306 1 367 285 109 78 chr4 37667119 37668135 -164660212 - L1ME2 LINE L1 -2427 3653 2582 11329 188 22 29 chr4 37668337 37670613 -164657734 + ERVL-D LTR ERVL 3459 5719 -45 376 153 42 0 chr4 37670618 37670690 -164657657 + ERVL-D LTR ERVL 5685 5759 -5 799 216 92 26 chr4 37670693 37670920 -164657427 + MLT2D LTR ERVL 6 247 -167 333 229 172 25 chr4 37671065 37671143 -164657204 + MLT2D LTR ERVL 275 340 -74 330 26 0 0 chr4 37671143 37671182 -164657165 + (CA)n Simple_repeat Simple_repeat 2 40 0 333 229 172 25 chr4 37671182 37671225 -164657122 + MLT2D LTR ERVL 340 414 0 369 269 95 65 chr4 37671274 37671612 -164656735 - L1ME2 LINE L1 -3671 2409 2062 23 54 0 0 chr4 37671684 37671721 -164656626 + AT_rich Low_complexity Low_complexity 1 37 0 32 26 0 0 chr4 37671887 37671926 -164656421 + AT_rich Low_complexity Low_complexity 1 39 0 266 267 96 20 chr4 37671986 37672132 -164656215 - L1ME2 LINE L1 -4527 1734 1578 201 39 0 0 chr4 37672215 37672241 -164656106 + (TA)n Simple_repeat Simple_repeat 1 26 0 1421 279 58 43 chr4 37672336 37673367 -164654980 - L1ME2 LINE L1 -4924 1158 253 4608 21 0 0 chr4 37673446 37673977 -164654370 - L1PA3 LINE L1 -3 6152 5622 18085 36 1 6 chr4 37673977 37676246 -164652101 + L1P LINE L1 1163 3420 -2726 7744 25 0 0 chr4 37677014 37677913 -164650434 - L1PA3 LINE L1 -3 6152 5254 265 286 12 0 chr4 37678558 37678642 -164649705 + HERVL LTR ERVL 3443 3527 -2127 2151 139 0 0 chr4 37679753 37680062 -164648285 + AluSx SINE Alu 1 309 -3 2066 141 0 0 chr4 37682888 37683187 -164645160 + AluSg SINE Alu 7 305 -5 2020 152 35 16 chr4 37683415 37683783 -164644564 - THE1C LTR MaLR 0 375 1 201 202 11 22 chr4 37684351 37684440 -164643907 + (TA)n Simple_repeat Simple_repeat 1 88 0 282 56 0 0 chr4 37684446 37684482 -164643865 + (TG)n Simple_repeat Simple_repeat 2 37 0 245 313 143 9 chr4 37684499 37684611 -164643736 + L2 LINE L2 3185 3311 -2 1879 162 32 24 chr4 37685494 37685865 -164642482 - THE1C LTR MaLR 0 375 2 8503 153 39 34 chr4 37685866 37687438 -164640909 - THE1C-int LTR MaLR 0 1580 1 1919 126 23 78 chr4 37687438 37687515 -164640832 - THE1C LTR MaLR 0 375 295 243 0 0 0 chr4 37687515 37687542 -164640805 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2086 87 0 28 chr4 37687544 37687831 -164640516 - AluY SINE Alu -32 279 1 1919 126 23 78 chr4 37687831 37688147 -164640200 - THE1C LTR MaLR -81 294 1 217 260 0 130 chr4 37688487 37688610 -164639737 + MIR SINE MIR 25 131 -77 235 342 51 17 chr4 37689859 37689976 -164638371 - MER5A DNA MER1_type -6 183 63 22 0 0 0 chr4 37689976 37689998 -164638349 + AT_rich Low_complexity Low_complexity 1 22 0 316 270 13 97 chr4 37690019 37690256 -164638091 - L2 LINE L2 -78 3235 3019 26 74 0 0 chr4 37690864 37690918 -164637429 + AT_rich Low_complexity Low_complexity 1 54 0 2825 100 18 5 chr4 37691173 37691572 -164636775 + MLT2A1 LTR ERVL 1 404 -40 311 318 0 0 chr4 37691572 37691660 -164636687 + L1MC4 LINE L1 6616 6703 -1339 235 222 19 0 chr4 37691677 37691731 -164636616 + MLT2A2 LTR ERVL 399 453 0 35246 101 9 12 chr4 37691731 37696681 -164631666 + HERVL-A2-A1 LTR ERVL 1 4937 -717 537 114 0 0 chr4 37696681 37696760 -164631587 + AluY SINE Alu 215 293 -18 4472 218 1 8 chr4 37696760 37697491 -164630856 + HERVL-A2-A1 LTR ERVL 4929 5654 0 3042 108 23 2 chr4 37697491 37697926 -164630421 + MLT2A1 LTR ERVL 1 444 0 31 88 0 0 chr4 37698008 37698088 -164630259 + AT_rich Low_complexity Low_complexity 1 80 0 323 340 73 0 chr4 37698403 37698609 -164629738 - LTR33 LTR ERVL -2 519 299 715 229 42 95 chr4 37698860 37699197 -164629150 - MLT1D LTR MaLR -6 499 181 2037 242 26 4 chr4 37699549 37700011 -164628336 + MER70A LTR ERVL 1 472 0 1581 151 148 75 chr4 37700244 37700642 -164627705 - MSTA LTR MaLR -1 427 1 634 143 0 9 chr4 37700642 37700754 -164627593 - MSTA-int LTR MaLR 0 1580 1470 5354 131 4 50 chr4 37700770 37701473 -164626874 + L1PA12 LINE L1 5263 5915 -253 2163 102 0 3 chr4 37701473 37701794 -164626553 + AluY SINE Alu 1 320 0 5354 131 4 50 chr4 37701794 37702036 -164626311 + L1PA12 LINE L1 5915 6166 -2 8002 182 6 34 chr4 37702046 37703564 -164624783 - MSTA-int LTR MaLR -102 1478 3 1749 158 103 79 chr4 37703566 37703984 -164624363 - MSTA LTR MaLR 0 428 1 23 78 0 0 chr4 37703987 37704038 -164624309 + AT_rich Low_complexity Low_complexity 1 51 0 2031 147 3 3 chr4 37704418 37704730 -164623617 + AluSx SINE Alu 1 312 0 243 252 41 32 chr4 37705343 37705466 -164622881 + L1MA9 LINE L1 6151 6274 -38 264 158 0 0 chr4 37705633 37705690 -164622657 + (TCCA)n Simple_repeat Simple_repeat 2 58 0 306 215 0 15 chr4 37705694 37705759 -164622588 + MIR SINE MIR 196 259 -3 524 164 9 0 chr4 37706015 37706125 -164622222 + (TAGA)n Simple_repeat Simple_repeat 3 113 0 22 56 0 0 chr4 37706747 37706783 -164621564 + AT_rich Low_complexity Low_complexity 1 36 0 2358 85 0 3 chr4 37707067 37707372 -164620975 + AluY SINE Alu 2 305 -6 403 325 123 0 chr4 37707464 37707627 -164620720 - L2 LINE L2 -2274 1040 858 364 175 62 38 chr4 37708913 37708993 -164619354 + MIR SINE MIR 181 262 0 224 305 0 12 chr4 37709269 37709351 -164618996 + MIR SINE MIR 112 192 -70 1513 223 130 66 chr4 37710388 37710979 -164617368 + MER92B LTR ERV1 7 635 -1 209 369 12 12 chr4 37711083 37711167 -164617180 + MIR SINE MIR 18 101 -107 955 73 0 0 chr4 37711628 37711752 -164616595 - L1PB1 LINE L1 -1 6866 6743 12649 176 59 14 chr4 37711752 37717602 -164610745 - L1PB1 LINE L1 -706 6161 1 239 295 53 11 chr4 37717630 37717725 -164610622 + MIR SINE MIR 118 216 -46 6314 159 9 27 chr4 37719173 37721045 -164607302 - L1PA14 LINE L1 -3 6158 4331 2091 88 0 20 chr4 37721045 37721339 -164607008 - AluY SINE Alu -23 288 1 6314 159 9 27 chr4 37721339 37721586 -164606761 - L1PA14 LINE L1 -1830 4331 4081 187 297 27 27 chr4 37721599 37721673 -164606674 + MIR3 SINE MIR 104 177 -31 1647 124 29 7 chr4 37721733 37722008 -164606339 + L1MA4A LINE L1 6011 6291 -12 23 68 0 0 chr4 37722008 37722052 -164606295 + AT_rich Low_complexity Low_complexity 1 44 0 1509 226 46 3 chr4 37722300 37722650 -164605697 - MLT1A1 LTR MaLR 0 365 1 185 364 16 50 chr4 37722978 37723099 -164605248 + MIR SINE MIR 90 206 -56 1924 151 0 10 chr4 37723905 37724217 -164604130 - AluSx SINE Alu -2 310 2 924 116 0 41 chr4 37724535 37724681 -164603666 + FRAM SINE Alu 29 168 -8 289 229 89 8 chr4 37725513 37725641 -164602706 - MER67B LTR ERV1 0 661 325 * 959 210 14 88 chr4 37725621 37725916 -164602431 - MER31A LTR ERV1 -212 273 1 28 0 0 0 chr4 37726622 37726650 -164601697 + AT_rich Low_complexity Low_complexity 1 28 0 4759 174 68 17 chr4 37728471 37728675 -164599672 + L1MA8 LINE L1 5095 5287 -1004 195 42 0 0 chr4 37728675 37728699 -164599648 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4759 174 68 17 chr4 37728699 37729644 -164598703 + L1MA8 LINE L1 5287 6288 -3 302 331 73 50 chr4 37730068 37730095 -164598252 - L1M4 LINE L1 -2227 3919 3894 2195 90 17 10 chr4 37730095 37730395 -164597952 + AluSg1 SINE Alu 1 302 -7 302 331 73 50 chr4 37730395 37730748 -164597599 - L1M4 LINE L1 -2252 3894 3530 1633 126 3 90 chr4 37731239 37731561 -164596786 + AluSc SINE Alu 4 299 0 1757 213 31 33 chr4 37733104 37733527 -164594820 + MSTB LTR MaLR 1 422 -4 298 277 0 0 chr4 37733933 37734016 -164594331 + (TA)n Simple_repeat Simple_repeat 2 84 0 1706 161 34 47 chr4 37734079 37734459 -164593888 - THE1C LTR MaLR 0 375 1 26 30 0 0 chr4 37734863 37734896 -164593451 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr4 37735261 37735292 -164593055 + AT_rich Low_complexity Low_complexity 1 31 0 231 125 0 0 chr4 37735382 37735422 -164592925 + (TG)n Simple_repeat Simple_repeat 2 41 0 22 0 0 0 chr4 37735831 37735853 -164592494 + AT_rich Low_complexity Low_complexity 1 22 0 1071 209 80 51 chr4 37736060 37736235 -164592112 + MLT1B LTR MaLR 5 173 -217 348 24 0 0 chr4 37736235 37736276 -164592071 + (TC)n Simple_repeat Simple_repeat 2 42 0 1071 209 80 51 chr4 37736276 37736474 -164591873 + MLT1B LTR MaLR 173 389 -1 314 307 35 9 chr4 37737705 37737819 -164590528 + MIR SINE MIR 73 189 -73 25 0 0 0 chr4 37737901 37737926 -164590421 + AT_rich Low_complexity Low_complexity 1 25 0 2373 87 3 0 chr4 37738537 37738848 -164589499 + AluSp SINE Alu 2 313 0 580 313 58 10 chr4 37739389 37739597 -164588750 + LTR33 LTR ERVL 1 218 -303 22 88 0 0 chr4 37739734 37739791 -164588556 + AT_rich Low_complexity Low_complexity 1 57 0 21 71 0 0 chr4 37740294 37740336 -164588011 + AT_rich Low_complexity Low_complexity 1 42 0 2279 162 78 14 chr4 37740483 37740908 -164587439 + L1PA16 LINE L1 5706 6157 -9 1126 204 15 27 chr4 37742564 37742824 -164585523 + AluJo SINE Alu 9 265 -47 22 35 0 0 chr4 37742903 37742932 -164585415 + AT_rich Low_complexity Low_complexity 1 29 0 2044 121 3 7 chr4 37743004 37743301 -164585046 - AluSx SINE Alu -16 296 1 585 228 12 47 chr4 37744261 37744432 -164583915 + MIR SINE MIR 42 206 -56 2177 108 3 3 chr4 37744442 37744737 -164583610 - AluSx SINE Alu -17 295 1 2103 128 7 3 chr4 37744774 37745080 -164583267 - AluSx SINE Alu -5 307 1 228 336 27 48 chr4 37745373 37745519 -164582828 - L2 LINE L2 -9 3304 3162 23 0 0 0 chr4 37746018 37746041 -164582306 + AT_rich Low_complexity Low_complexity 1 23 0 11329 153 113 15 chr4 37746043 37748176 -164580171 + Tigger1 DNA MER2_type 3 2345 -73 437 261 9 17 chr4 37748181 37748296 -164580051 + MIR SINE MIR 119 232 -30 23 33 0 0 chr4 37748660 37748690 -164579657 + AT_rich Low_complexity Low_complexity 1 30 0 2394 84 0 3 chr4 37748723 37749034 -164579313 + AluY SINE Alu 1 310 -1 986 250 67 89 chr4 37749084 37749437 -164578910 - MLT1E LTR MaLR 0 632 286 2797 181 63 12 chr4 37749474 37750048 -164578299 + L1MC1 LINE L1 5605 6207 -126 22 35 0 0 chr4 37751575 37751604 -164576743 + AT_rich Low_complexity Low_complexity 1 29 0 898 264 59 15 chr4 37751760 37752033 -164576314 + MER34 LTR ERV1 1 285 -257 792 140 87 0 chr4 37752081 37752231 -164576116 + MER34 LTR ERV1 380 542 0 24 100 0 0 chr4 37752705 37752785 -164575562 + AT_rich Low_complexity Low_complexity 1 80 0 453 345 49 30 chr4 37753224 37753528 -164574819 + MLT1I LTR MaLR 100 409 0 1646 79 9 0 chr4 37753838 37754066 -164574281 + L1PA8 LINE L1 5942 6171 -1 514 337 32 28 chr4 37754445 37754694 -164573653 + MIR SINE MIR 13 262 0 191 152 30 0 chr4 37754920 37754953 -164573394 + L2 LINE L2 3224 3257 -15 276 30 0 0 chr4 37755260 37755293 -164573054 + (TG)n Simple_repeat Simple_repeat 2 34 0 865 330 105 50 chr4 37755934 37756904 -164571443 + L2 LINE L2 2310 3313 0 1986 114 14 4 chr4 37757510 37757812 -164570535 + AluSq SINE Alu 1 305 0 244 312 33 5 chr4 37758055 37758153 -164570194 + MIR SINE MIR 56 146 -62 2205 122 11 8 chr4 37758704 37759056 -164569291 + THE1A LTR MaLR 3 355 0 11008 106 7 6 chr4 37759056 37760634 -164567713 + THE1A-int LTR MaLR 1 1580 0 1881 116 13 121 chr4 37760634 37761032 -164567315 + THE1A LTR MaLR 1 355 0 256 304 65 49 chr4 37761209 37761393 -164566954 + MER102b DNA MER1_type 145 331 -10 2227 122 6 42 chr4 37761610 37761970 -164566377 - THE1B LTR MaLR -17 347 1 206 182 0 23 chr4 37761998 37762042 -164566305 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 200 277 0 0 chr4 37762306 37762353 -164565994 + (CA)n Simple_repeat Simple_repeat 1 47 0 22 0 0 0 chr4 37762615 37762637 -164565710 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr4 37762950 37762993 -164565354 + AT_rich Low_complexity Low_complexity 1 43 0 312 248 74 13 chr4 37763794 37763943 -164564404 - L1MA10 LINE L1 -8 6326 6169 1144 225 3 5 chr4 37764121 37764369 -164563978 - L1PA16 LINE L1 -7 6167 5923 472 202 0 0 chr4 37765128 37765212 -164563135 + LTR29 LTR ERV1 464 547 -75 21 0 0 0 chr4 37765597 37765618 -164562729 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr4 37765733 37765782 -164562565 + AT_rich Low_complexity Low_complexity 1 49 0 332 231 0 0 chr4 37766025 37766103 -164562244 + L1MA10 LINE L1 6250 6327 -7 1431 186 3 41 chr4 37766468 37766784 -164561563 - AluJo SINE Alu 0 307 3 22 80 0 0 chr4 37767397 37767447 -164560900 + AT_rich Low_complexity Low_complexity 1 50 0 28 0 0 0 chr4 37767712 37767740 -164560607 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 37768271 37768299 -164560048 + AT_rich Low_complexity Low_complexity 1 28 0 225 243 9 122 chr4 37768575 37768682 -164559665 + L2 LINE L2 3171 3265 -7 21 0 0 0 chr4 37768966 37768987 -164559360 + AT_rich Low_complexity Low_complexity 1 21 0 13034 105 7 0 chr4 37768995 37771718 -164556629 + L1PA7 LINE L1 3357 6146 -8 231 114 0 0 chr4 37771819 37771854 -164556493 + (TA)n Simple_repeat Simple_repeat 1 35 0 249 57 0 0 chr4 37772103 37772138 -164556209 + (CA)n Simple_repeat Simple_repeat 2 36 0 29 104 0 0 chr4 37774244 37774350 -164553997 + AT_rich Low_complexity Low_complexity 1 106 0 306 272 111 12 chr4 37774449 37774530 -164553817 - L2 LINE L2 0 3313 3225 280 239 228 54 chr4 37774714 37774881 -164553466 + L2 LINE L2 3113 3308 -5 31 0 0 0 chr4 37775298 37775329 -164553018 + AT_rich Low_complexity Low_complexity 1 31 0 417 354 128 10 chr4 37775475 37775763 -164552584 - L2 LINE L2 -42 3271 2950 417 129 0 0 chr4 37775765 37775827 -164552520 + L1 LINE L1 3787 3848 -2298 645 174 0 23 chr4 37775842 37775974 -164552373 + L1PB4 LINE L1 6027 6155 -1 21 82 0 0 chr4 37777880 37777929 -164550418 + AT_rich Low_complexity Low_complexity 1 49 0 1179 194 127 8 chr4 37778095 37778363 -164549984 + AluJb SINE Alu 1 300 -2 1877 104 15 4 chr4 37778522 37778782 -164549565 - AluSg SINE Alu -25 285 23 229 253 32 32 chr4 37779477 37779572 -164548775 + (CAGAGA)n Simple_repeat Simple_repeat 2 96 0 214 276 35 0 chr4 37781341 37781399 -164546948 + L3 LINE CR1 86 145 -1432 405 229 41 41 chr4 37781622 37781792 -164546555 + MER104 DNA Tc2 10 179 -1 330 288 149 42 chr4 37782102 37782317 -164546030 - MIR SINE MIR -4 258 21 529 215 31 110 chr4 37782547 37782738 -164545609 + MLT1D LTR MaLR 1 176 -329 1602 169 78 36 chr4 37782738 37783098 -164545249 + THE1C LTR MaLR 1 375 0 6738 148 62 45 chr4 37783100 37784381 -164543966 + THE1C-int LTR MaLR 3 1304 -276 1075 127 41 15 chr4 37784664 37784861 -164543486 + THE1C-int LTR MaLR 1379 1580 0 1532 146 64 67 chr4 37784861 37785237 -164543110 + THE1C LTR MaLR 1 375 0 916 266 33 7 chr4 37785260 37785535 -164542812 + MLT1D LTR MaLR 224 505 0 23 0 0 0 chr4 37786800 37786823 -164541524 + AT_rich Low_complexity Low_complexity 1 23 0 195 182 0 0 chr4 37786968 37787001 -164541346 + L2 LINE L2 3221 3253 -19 1315 180 13 72 chr4 37788224 37788529 -164539818 + AluJo SINE Alu 1 287 -25 460 332 25 5 chr4 37788935 37789137 -164539210 - MIR SINE MIR -54 208 3 1521 210 60 9 chr4 37790192 37790539 -164537808 - MLT1A1 LTR MaLR 0 365 1 27 49 0 0 chr4 37790597 37790638 -164537709 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr4 37790924 37790947 -164537400 + AT_rich Low_complexity Low_complexity 1 23 0 250 299 125 14 chr4 37791895 37792039 -164536308 + MIR SINE MIR 47 206 -56 333 0 0 0 chr4 37793053 37793090 -164535257 + (CA)n Simple_repeat Simple_repeat 2 38 0 1970 191 4 71 chr4 37793090 37793552 -164534795 - Tigger2a DNA MER2_type -3 431 1 258 146 21 0 chr4 37793552 37793600 -164534747 + (TA)n Simple_repeat Simple_repeat 2 50 0 673 175 23 6 chr4 37793607 37793784 -164534563 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 229 232 30 71 chr4 37793868 37793967 -164534380 - L2 LINE L2 -67 3246 3152 1295 179 64 92 chr4 37794672 37795263 -164533084 - MER67C LTR ERV1 -4 510 1 1261 227 59 81 chr4 37795333 37795794 -164532553 - MLT1C LTR MaLR 0 467 1 21 0 0 0 chr4 37796681 37796702 -164531645 + AT_rich Low_complexity Low_complexity 1 21 0 2324 121 21 16 chr4 37796901 37797273 -164531074 + THE1C LTR MaLR 1 374 -1 8047 153 54 7 chr4 37797274 37798637 -164529710 + THE1C-int LTR MaLR 1 1427 -153 4818 160 19 19 chr4 37798783 37799747 -164528600 + L1M1 LINE L1 2535 3498 -4067 2643 201 13 12 chr4 37799747 37800673 -164527674 + L1PB3 LINE L1 4846 5772 -382 240 111 0 0 chr4 37800881 37800917 -164527430 + (TG)n Simple_repeat Simple_repeat 2 37 0 2005 155 8 44 chr4 37800928 37801314 -164527033 + L1PB3 LINE L1 5782 6153 -1 271 290 45 0 chr4 37801329 37801484 -164526863 + L1M1 LINE L1 3669 3830 -3735 7810 240 52 41 chr4 37801521 37802181 -164526166 + L1M1 LINE L1 3970 4621 -3211 948 26 0 0 chr4 37802181 37802295 -164526052 - L1PA3 LINE L1 -2 6153 6040 7810 240 52 41 chr4 37802295 37804406 -164523941 + L1M1 LINE L1 4621 6805 -1027 1672 130 93 31 chr4 37804406 37804759 -164523588 - THE1C LTR MaLR 0 375 1 7810 240 52 41 chr4 37804759 37805042 -164523305 + L1M1 LINE L1 6805 7083 -749 355 295 98 0 chr4 37805134 37805246 -164523101 + L2 LINE L2 3191 3313 0 36 23 0 0 chr4 37806674 37806717 -164521630 + AT_rich Low_complexity Low_complexity 1 43 0 447 355 88 37 chr4 37806859 37807053 -164521294 + L2 LINE L2 2489 2672 -600 1129 288 51 3 chr4 37807053 37807407 -164520940 + MLT1A2 LTR MaLR 4 374 0 447 355 88 37 chr4 37807407 37807755 -164520592 + L2 LINE L2 2672 3053 -219 521 108 161 11 chr4 37807836 37807929 -164520418 + MSTA LTR MaLR 1 107 -321 1193 191 57 15 chr4 37808039 37808301 -164520046 + MLT1B LTR MaLR 114 386 -4 * 1710 199 29 0 chr4 37808299 37808640 -164519707 + MER67C LTR ERV1 356 706 -4 239 294 69 29 chr4 37809002 37809104 -164519243 + MIR SINE MIR 46 151 -111 360 326 0 0 chr4 37809309 37809404 -164518943 - L2 LINE L2 -27 3286 3192 192 264 132 0 chr4 37809726 37809779 -164518568 + L2 LINE L2 2925 2984 -329 255 350 120 42 chr4 37811260 37811686 -164516661 - L2 LINE L2 -50 3263 2805 4332 177 17 9 chr4 37812122 37813508 -164514839 - L1PA16 LINE L1 -1 6165 4757 220 172 35 0 chr4 37813531 37813589 -164514758 + (TA)n Simple_repeat Simple_repeat 1 60 0 2218 185 15 3 chr4 37813603 37814070 -164514277 - L1M3b LINE L1 -4616 2880 2053 370 167 0 0 chr4 37814276 37814336 -164514011 + AluSp/q SINE Alu 241 300 -3 630 127 24 8 chr4 37814346 37814472 -164513875 + GA-rich Low_complexity Low_complexity 4 131 0 5651 217 12 14 chr4 37814478 37816322 -164512025 - L1 LINE L1 -2508 5057 3217 587 334 135 42 chr4 37816453 37817211 -164511136 + L2 LINE L2 1532 2359 -955 668 200 8 0 chr4 37817280 37817405 -164510942 - FLAM_C SINE Alu -17 126 1 431 327 48 57 chr4 37817471 37817804 -164510543 + L2 LINE L2 2929 3258 -55 2781 13 0 0 chr4 37817830 37818139 -164510208 + AluYb8 SINE Alu 1 309 -9 291 345 17 9 chr4 37818164 37818280 -164510067 + MIR SINE MIR 38 154 -108 333 301 75 27 chr4 37818447 37818593 -164509754 - MIR SINE MIR -7 255 103 21 36 0 0 chr4 37819529 37819557 -164508790 + AT_rich Low_complexity Low_complexity 1 28 0 251 190 20 20 chr4 37819783 37819883 -164508464 + (TA)n Simple_repeat Simple_repeat 1 100 0 774 143 24 0 chr4 37819950 37820076 -164508271 + MLT2B1 LTR ERVL 1 129 -391 261 0 0 0 chr4 37820170 37820199 -164508148 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 500 261 69 0 chr4 37820535 37820703 -164507644 - L1ME3A LINE L1 -180 5982 5803 2253 306 70 18 chr4 37820881 37821971 -164506376 + L1MEc LINE L1 5 1150 -5246 352 257 53 0 chr4 37821967 37822080 -164506267 + L1MB1 LINE L1 6033 6151 -38 * 574 242 160 57 chr4 37822125 37822443 -164505904 + L1ME1 LINE L1 5812 6162 -4 384 22 0 0 chr4 37822814 37822859 -164505488 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 293 311 0 82 chr4 37822944 37823066 -164505281 + L2 LINE L2 3202 3313 0 1547 92 8 52 chr4 37823447 37823697 -164504650 + L1PA13 LINE L1 5918 6156 -7 21 36 0 0 chr4 37824405 37824433 -164503914 + AT_rich Low_complexity Low_complexity 1 28 0 23 78 0 0 chr4 37826286 37826337 -164502010 + AT_rich Low_complexity Low_complexity 1 51 0 1691 211 31 86 chr4 37826542 37826584 -164501763 - MLT2B1 LTR ERVL 0 520 477 321 47 0 0 chr4 37826584 37826627 -164501720 + (CA)n Simple_repeat Simple_repeat 2 44 0 1691 211 31 86 chr4 37826627 37827134 -164501213 - MLT2B1 LTR ERVL -43 477 1 392 251 82 24 chr4 37827538 37827745 -164500602 - MER69 DNA AcHobo -114 2412 2194 22 0 0 0 chr4 37828090 37828112 -164500235 + AT_rich Low_complexity Low_complexity 1 22 0 664 207 0 0 chr4 37828548 37828669 -164499678 + AluJb SINE Alu 174 294 -18 3157 160 25 62 chr4 37828769 37828972 -164499375 - Tigger3(Golem) DNA MER2_type -2180 849 640 1526 130 5 0 chr4 37828972 37829195 -164499152 - AluSg/x SINE Alu -21 289 66 3157 160 25 62 chr4 37829195 37829624 -164498723 - Tigger3(Golem) DNA MER2_type -2389 640 240 7193 187 126 23 chr4 37829624 37831215 -164497132 + MER52A LTR ERV1 1 1755 0 1167 192 94 0 chr4 37831215 37831437 -164496910 - Tigger3(Golem) DNA MER2_type -2786 243 1 694 151 9 0 chr4 37831681 37831787 -164496560 + U6 snRNA snRNA 1 107 0 6101 88 16 33 chr4 37831787 37833552 -164494795 + L1PA11 LINE L1 4442 6167 -7 189 0 0 0 chr4 37833563 37833584 -164494763 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 465 189 41 41 chr4 37833964 37834086 -164494261 + LTR9 LTR ERV1 491 612 0 1221 206 13 0 chr4 37834202 37834435 -164493912 - MER46A DNA MER2_type 0 236 1 1623 140 47 4 chr4 37835076 37835333 -164493014 - THE1B LTR MaLR -96 268 1 23 92 0 0 chr4 37835518 37835583 -164492764 + AT_rich Low_complexity Low_complexity 1 65 0 1128 300 36 33 chr4 37835805 37836651 -164491696 - L1M4c LINE L1 -4705 1941 1099 1627 155 57 43 chr4 37836651 37837019 -164491328 + THE1C LTR MaLR 1 373 -2 1128 300 36 33 chr4 37837019 37837059 -164491288 - L1M4c LINE L1 -5547 1099 1061 457 48 0 0 chr4 37837151 37837213 -164491134 + L1PA6 LINE L1 6092 6153 -1 324 188 0 0 chr4 37837314 37837383 -164490964 + CT-rich Low_complexity Low_complexity 2 70 0 1878 139 71 8 chr4 37838074 37838427 -164489920 - THE1C LTR MaLR 0 375 1 22 70 0 0 chr4 37838507 37838550 -164489797 + AT_rich Low_complexity Low_complexity 1 43 0 211 319 58 0 chr4 37838603 37838672 -164489675 - L2 LINE L2 -4 3309 3237 266 290 28 85 chr4 37838752 37838928 -164489419 - MIR SINE MIR -13 249 84 201 315 8 100 chr4 37839037 37839167 -164489180 - L2 LINE L2 -17 3296 3179 1818 168 131 8 chr4 37839316 37839697 -164488650 + MSTA LTR MaLR 1 428 0 202 343 29 38 chr4 37840056 37840161 -164488186 + MIR SINE MIR 32 135 -73 255 312 164 21 chr4 37840990 37841179 -164487168 - MIR SINE MIR -44 218 3 345 47 0 0 chr4 37842262 37842305 -164486042 + (CA)n Simple_repeat Simple_repeat 2 44 0 1879 140 7 23 chr4 37842313 37842613 -164485734 - AluSx SINE Alu -17 295 1 21 0 0 0 chr4 37843723 37843744 -164484603 + AT_rich Low_complexity Low_complexity 1 21 0 4764 139 21 27 chr4 37843850 37844678 -164483669 - L1PA16 LINE L1 -2 6164 5338 355 330 91 24 chr4 37845114 37845323 -164483024 - MLT1I LTR MaLR -140 269 47 27 0 0 0 chr4 37846064 37846091 -164482256 + AT_rich Low_complexity Low_complexity 1 27 0 265 277 101 20 chr4 37846332 37846480 -164481867 - HAL1 LINE L1 -2285 222 63 309 26 0 0 chr4 37847219 37847257 -164481090 + (CA)n Simple_repeat Simple_repeat 2 39 0 13054 193 42 8 chr4 37848771 37851369 -164476978 - L1M1 LINE L1 -4873 2692 7 3465 176 47 41 chr4 37851811 37852591 -164475756 + LTR1 LTR ERV1 1 785 0 29 47 0 0 chr4 37852928 37852971 -164475376 + AT_rich Low_complexity Low_complexity 1 43 0 198 103 0 0 chr4 37853602 37853631 -164474716 + (TG)n Simple_repeat Simple_repeat 2 30 0 415 334 80 40 chr4 37853727 37854349 -164473998 + L1MEc LINE L1 88 734 -5662 1036 121 108 0 chr4 37854387 37854553 -164473794 - MER30 DNA MER1_type -46 184 1 692 286 68 13 chr4 37854567 37854948 -164473399 + L1MEc LINE L1 756 1157 -5239 22 35 0 0 chr4 37855778 37855807 -164472540 + AT_rich Low_complexity Low_complexity 1 29 0 426 69 0 0 chr4 37856691 37856749 -164471598 + (TG)n Simple_repeat Simple_repeat 2 59 0 1692 157 62 45 chr4 37857310 37857667 -164470680 + MLT2D LTR ERVL 1 363 -51 313 310 39 19 chr4 37857705 37857860 -164470487 - L2 LINE L2 -804 2510 2353 2126 221 30 14 chr4 37858028 37858462 -164469885 - MER70B LTR ERVL -137 441 1 552 279 153 50 chr4 37858470 37858543 -164469804 - L2 LINE L2 -1190 2124 2060 207 0 0 0 chr4 37858543 37858566 -164469781 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 552 279 153 50 chr4 37858566 37858833 -164469514 - L2 LINE L2 -1254 2060 1749 28 61 0 0 chr4 37858968 37859017 -164469330 + AT_rich Low_complexity Low_complexity 1 49 0 2494 83 23 0 chr4 37860075 37860423 -164467924 + L1PA7 LINE L1 5797 6152 -2 400 331 138 20 chr4 37860433 37860838 -164467509 + L1ME3A LINE L1 4814 5266 -880 524 320 62 28 chr4 37860857 37861423 -164466924 + L1ME3A LINE L1 5299 5883 -287 365 227 33 80 chr4 37862376 37862526 -164465821 - L1ME LINE L1 -361 5801 5659 342 267 44 65 chr4 37862573 37862862 -164465485 - L1ME LINE L1 -639 5523 5260 25 65 0 0 chr4 37864101 37864147 -164464200 + AT_rich Low_complexity Low_complexity 1 46 0 5419 135 64 72 chr4 37864357 37864924 -164463423 - Tigger3b DNA MER2_type -1798 1230 660 1618 128 34 4 chr4 37864924 37865190 -164463157 - AluSx SINE Alu -6 306 33 5419 135 64 72 chr4 37865190 37865863 -164462484 - Tigger3b DNA MER2_type -2368 660 1 21 36 0 0 chr4 37866092 37866120 -164462227 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 37866729 37866751 -164461596 + AT_rich Low_complexity Low_complexity 1 22 0 228 411 69 9 chr4 37867165 37867396 -164460951 + L2 LINE L2 728 972 -2342 209 398 0 9 chr4 37868017 37868125 -164460222 + L2 LINE L2 1245 1351 -1963 1600 251 107 81 chr4 37868218 37868908 -164459439 + MER21B LTR ERV1 1 708 -155 3119 133 2 12 chr4 37919526 37920024 -164408323 + L1P LINE L1 9 501 -5645 3013 238 40 48 chr4 37920124 37921580 -164406767 - L1 LINE L1 -1862 4520 2080 286 260 48 51 chr4 37921933 37922013 -164406334 + L1ME LINE L1 5411 5490 -694 1438 182 122 12 chr4 37922013 37922342 -164406005 - MLT1A1 LTR MaLR 0 365 1 286 260 48 51 chr4 37922342 37922430 -164405917 + L1ME LINE L1 5490 5577 -607 217 265 24 0 chr4 37922683 37922766 -164405581 + (TA)n Simple_repeat Simple_repeat 2 86 0 26 30 0 0 chr4 37922817 37922850 -164405497 + AT_rich Low_complexity Low_complexity 1 33 0 203 322 58 0 chr4 37923061 37923148 -164405199 - L2 LINE L2 -1606 1708 1617 1777 113 122 36 chr4 37923271 37923606 -164404741 + THE1B LTR MaLR 1 364 0 797 168 19 0 chr4 37923756 37923911 -164404436 - L1MB1 LINE L1 0 6168 6011 313 250 122 50 chr4 37924900 37925080 -164403267 + L1ME3A LINE L1 4309 4501 -1645 1817 149 4 0 chr4 37925080 37925355 -164402992 + AluSx SINE Alu 1 276 -36 397 348 123 10 chr4 37925654 37926045 -164402302 + L1ME3A LINE L1 4798 5232 -914 760 310 91 37 chr4 37926197 37927039 -164401308 + L1ME3A LINE L1 5257 6155 -15 22 0 0 0 chr4 37927045 37927067 -164401280 + AT_rich Low_complexity Low_complexity 1 22 0 2227 71 3 0 chr4 37927449 37927743 -164400604 - L1PA5 LINE L1 0 6154 5860 24 67 0 0 chr4 37928722 37928767 -164399580 + AT_rich Low_complexity Low_complexity 1 45 0 214 238 0 0 chr4 37929099 37929141 -164399206 + L2 LINE L2 3255 3296 -17 23 0 0 0 chr4 37929159 37929182 -164399165 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 37929237 37929261 -164399086 + AT_rich Low_complexity Low_complexity 1 24 0 28 48 0 0 chr4 37929288 37929330 -164399017 + AT_rich Low_complexity Low_complexity 1 42 0 1583 169 28 35 chr4 37930224 37930514 -164397833 - AluJb SINE Alu -22 290 3 2188 191 58 18 chr4 37930544 37931189 -164397158 + L1MC3 LINE L1 5186 5758 -586 360 322 109 35 chr4 37933132 37933334 -164395013 - L2 LINE L2 -1928 1386 1170 196 372 46 31 chr4 37934166 37934362 -164393985 + L3 LINE CR1 1345 1543 -34 238 367 61 14 chr4 37935249 37935396 -164392951 + MER117 DNA MER1_type 6 159 -38 23 33 0 0 chr4 37935583 37935613 -164392734 + AT_rich Low_complexity Low_complexity 1 30 0 2471 62 0 0 chr4 37935806 37936113 -164392234 + AluY SINE Alu 1 307 -4 31 26 0 0 chr4 37936745 37936783 -164391564 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr4 37936932 37936953 -164391394 + AT_rich Low_complexity Low_complexity 1 21 0 934 294 56 49 chr4 37937074 37937134 -164391213 - L1MEc LINE L1 -4329 2067 2009 2151 122 54 20 chr4 37937134 37937486 -164390861 + THE1B LTR MaLR 1 364 0 934 294 56 49 chr4 37937486 37938099 -164390248 - L1MEc LINE L1 -4387 2009 1389 2187 107 3 3 chr4 37938115 37938414 -164389933 - AluSp SINE Alu -14 299 1 378 319 46 74 chr4 37938567 37938893 -164389454 - L1ME4a LINE L1 -87 6034 5718 209 383 62 57 chr4 37939048 37939257 -164389090 - L2 LINE L2 -232 3040 2831 201 425 45 20 chr4 37941719 37941919 -164386428 + L2 LINE L2 421 625 -2689 288 70 0 0 chr4 37942078 37942121 -164386226 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 323 377 86 16 chr4 37942656 37942969 -164385378 - L2 LINE L2 -1 3312 2978 2054 138 35 0 chr4 37942972 37943312 -164385035 + L1PB4 LINE L1 5798 6149 -7 493 343 179 7 chr4 37943402 37943848 -164384499 - L2 LINE L2 -437 2877 2355 222 156 0 0 chr4 37944107 37944152 -164384195 + (CA)n Simple_repeat Simple_repeat 2 46 0 648 198 56 2 chr4 37944156 37944345 -164384002 - MER8 DNA MER2_type 0 239 1 190 363 12 12 chr4 37944754 37944834 -164383513 + MIR SINE MIR 89 168 -94 628 302 78 25 chr4 37945008 37945253 -164383094 - MIR SINE MIR -1 261 4 213 355 0 0 chr4 37945267 37945343 -164383004 + MIR SINE MIR 110 185 -77 34 42 0 0 chr4 37945379 37945427 -164382920 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr4 37945447 37945475 -164382872 + AT_rich Low_complexity Low_complexity 1 28 0 1965 133 60 31 chr4 37945677 37946030 -164382317 - THE1B LTR MaLR -1 363 1 1316 143 60 0 chr4 37946449 37946666 -164381681 - MER30 DNA MER1_type 0 230 1 2044 150 21 47 chr4 37947192 37947572 -164380775 - THE1C LTR MaLR -5 370 1 29 28 0 0 chr4 37947756 37947792 -164380555 + AT_rich Low_complexity Low_complexity 1 36 0 25 51 0 0 chr4 37948458 37948497 -164379850 + AT_rich Low_complexity Low_complexity 1 39 0 33 90 0 0 chr4 37949606 37949695 -164378652 + AT_rich Low_complexity Low_complexity 1 89 0 24 32 0 0 chr4 37949728 37949759 -164378588 + AT_rich Low_complexity Low_complexity 1 31 0 319 213 0 0 chr4 37950221 37950282 -164378065 - MLT1D LTR MaLR -3 502 442 192 319 0 0 chr4 37951577 37951624 -164376723 - MER5B DNA MER1_type -129 49 3 264 322 111 17 chr4 37951744 37951924 -164376423 - MIR SINE MIR -48 214 18 225 94 0 0 chr4 37952516 37952548 -164375799 + (CA)n Simple_repeat Simple_repeat 2 33 0 348 64 0 0 chr4 37953349 37953396 -164374951 + (GA)n Simple_repeat Simple_repeat 2 48 0 1102 126 7 0 chr4 37954319 37954470 -164373877 - AluSg SINE Alu -147 163 12 920 138 0 0 chr4 37954470 37954608 -164373739 + AluSg/x SINE Alu 174 311 -1 21 36 0 0 chr4 37955936 37955964 -164372383 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 37956101 37956131 -164372216 + AT_rich Low_complexity Low_complexity 1 30 0 7694 21 0 0 chr4 37956131 37957536 -164370811 - L1PA2 LINE L1 -4 6151 4748 311 316 8 31 chr4 37958898 37959044 -164369303 + MLT1F LTR MaLR 93 240 -323 5861 174 36 32 chr4 37959044 37960804 -164367543 + L1MA8 LINE L1 4028 5789 -502 186 43 0 0 chr4 37960804 37960827 -164367520 + (CA)n Simple_repeat Simple_repeat 2 24 0 5861 174 36 32 chr4 37960827 37961007 -164367340 + L1MA8 LINE L1 5789 5967 -324 369 165 62 21 chr4 37961089 37961186 -164367161 + MLT1H1 LTR MaLR 449 549 -6 243 319 18 48 chr4 37961200 37961366 -164366981 - MLT1J1 LTR MaLR -268 178 18 1611 228 33 64 chr4 37961715 37962372 -164365975 - LTR29 LTR ERV1 0 653 1 278 287 61 55 chr4 37962489 37962653 -164365694 - MIR SINE MIR -6 256 92 240 350 20 30 chr4 37963040 37963140 -164365207 + L2 LINE L2 3197 3295 -18 36 23 0 0 chr4 37963527 37963570 -164364777 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 37965616 37965638 -164362709 + AT_rich Low_complexity Low_complexity 1 22 0 1274 234 68 25 chr4 37965919 37966313 -164362034 + MLT1D LTR MaLR 91 501 -4 25 31 0 0 chr4 37966640 37966672 -164361675 + AT_rich Low_complexity Low_complexity 1 32 0 503 221 47 21 chr4 37966732 37966892 -164361455 - L1ME2 LINE L1 -2 6160 5996 666 237 11 86 chr4 37966922 37967201 -164361146 - L1ME2 LINE L1 -389 5777 5520 3376 161 45 8 chr4 37967358 37967955 -164360392 - L1PA16 LINE L1 -79 6087 5469 2701 199 5 0 chr4 37967951 37968654 -164359693 + L1PA16 LINE L1 4786 5493 -673 * 751 307 129 8 chr4 37968657 37969129 -164359218 - L1ME2 LINE L1 -1828 4318 3790 1061 274 80 28 chr4 37969149 37969678 -164358669 + MER34B LTR ERV1 1 560 -4 500 319 46 67 chr4 37970024 37970178 -164358169 + HERVL LTR ERVL 3481 3637 -2017 2044 133 0 0 chr4 37970178 37970486 -164357861 + AluSx SINE Alu 3 310 0 500 319 46 67 chr4 37970486 37970805 -164357542 + HERVL LTR ERVL 3637 3946 -1708 313 350 44 28 chr4 37971665 37971896 -164356451 + HERVL LTR ERVL 4069 4275 -1379 1371 239 53 111 chr4 37971908 37972493 -164355854 - MLT1E2 LTR MaLR -10 616 94 736 340 79 44 chr4 37972565 37972842 -164355505 + HERVL LTR ERVL 4323 4589 -1175 1160 208 101 23 chr4 37972842 37973189 -164355158 + MLT1A2 LTR MaLR 1 374 0 736 340 79 44 chr4 37973189 37973593 -164354754 + HERVL LTR ERVL 4589 5028 -736 273 252 0 0 chr4 37973621 37973724 -164354623 + (TA)n Simple_repeat Simple_repeat 1 103 0 262 270 101 0 chr4 37974020 37974109 -164354238 - MIR SINE MIR -19 243 146 23 33 0 0 chr4 37974174 37974204 -164354143 + AT_rich Low_complexity Low_complexity 1 30 0 248 341 53 16 chr4 37974934 37975134 -164353213 + MIR SINE MIR 20 262 0 21 0 0 0 chr4 37975528 37975549 -164352798 + AT_rich Low_complexity Low_complexity 1 21 0 249 57 0 0 chr4 37976022 37976057 -164352290 + (TG)n Simple_repeat Simple_repeat 2 36 0 205 328 16 0 chr4 37976105 37976169 -164352178 - L2 LINE L2 -15 3257 3193 1922 148 0 10 chr4 37976188 37976486 -164351861 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr4 37978457 37978478 -164349869 + AT_rich Low_complexity Low_complexity 1 21 0 710 212 15 64 chr4 37978843 37979046 -164349301 - L1MDa LINE L1 -6089 451 259 3587 225 47 22 chr4 37979161 37980028 -164348319 + L1MDa LINE L1 447 1335 -5205 599 258 35 55 chr4 37980058 37980403 -164347944 + L1MB8 LINE L1 4515 4852 -1294 233 214 14 29 chr4 37980397 37980467 -164347880 + L1MB8 LINE L1 5350 5418 -824 * 1319 224 61 12 chr4 37980573 37980917 -164347430 + L1MD1 LINE L1 5880 6240 -2 1979 149 0 0 chr4 37981238 37981534 -164346813 - AluSx SINE Alu -16 296 1 1323 238 179 9 chr4 37981700 37982230 -164346117 + L1MB8 LINE L1 5559 6178 0 329 354 70 9 chr4 37982232 37982447 -164345900 + L1ME4a LINE L1 5648 5875 -246 3505 41 5 0 chr4 37982458 37982898 -164345449 - L1PA4 LINE L1 -2441 3705 3264 13664 30 8 1 chr4 37982898 37985315 -164343032 + L1PA4 LINE L1 3720 6152 -3 226 49 24 24 chr4 37985413 37985454 -164342893 + (TA)n Simple_repeat Simple_repeat 2 42 0 4979 141 30 9 chr4 37986469 37987811 -164340536 + L1PA13 LINE L1 4789 6152 -11 336 322 49 0 chr4 37988025 37988168 -164340179 + MLT1H LTR MaLR 77 226 -323 202 221 29 15 chr4 37988751 37988819 -164339528 + T-rich Low_complexity Low_complexity 4 72 0 454 235 18 72 chr4 37988880 37989046 -164339301 + MLT1H LTR MaLR 386 542 -7 28 29 0 0 chr4 37989421 37989456 -164338891 + AT_rich Low_complexity Low_complexity 1 35 0 227 228 10 40 chr4 37989840 37989941 -164338406 + A-rich Low_complexity Low_complexity 2 99 0 806 305 41 19 chr4 37990269 37990754 -164337593 + L1ME LINE L1 497 992 -5404 359 287 71 71 chr4 37990800 37991238 -164337109 + L1ME LINE L1 1088 1528 -4868 2226 108 3 3 chr4 37991238 37991543 -164336804 + AluSq SINE Alu 1 305 -8 359 287 71 71 chr4 37991543 37991693 -164336654 + L1ME LINE L1 1527 1676 -4720 338 265 109 11 chr4 37991761 37991943 -164336404 + L1ME LINE L1 2751 2954 -3261 365 281 89 46 chr4 37991994 37992027 -164336320 + L1ME LINE L1 4929 4959 -1256 180 0 0 0 chr4 37992027 37992047 -164336300 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 365 281 89 46 chr4 37992047 37992362 -164335985 + L1ME LINE L1 4959 5292 -923 332 162 0 27 chr4 37992550 37992624 -164335723 + L1ME LINE L1 5397 5468 -763 2318 134 0 48 chr4 37992635 37993031 -164335316 - MER51B LTR ERV1 0 377 1 1279 138 138 21 chr4 37993031 37993330 -164335017 - MER1B DNA MER1_type -5 334 1 489 218 32 8 chr4 37993334 37993458 -164334889 + L1ME LINE L1 5467 5593 -640 233 299 81 11 chr4 37993773 37993860 -164334487 + MIR SINE MIR 164 256 -6 272 289 26 19 chr4 37993866 37994022 -164334325 + CT-rich Low_complexity Low_complexity 3 159 0 24 77 0 0 chr4 37995048 37995100 -164333247 + AT_rich Low_complexity Low_complexity 1 52 0 23 54 0 0 chr4 37995217 37995254 -164333093 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 37995264 37995286 -164333061 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 37996323 37996348 -164331999 + AT_rich Low_complexity Low_complexity 1 25 0 1956 166 33 61 chr4 37996433 37996991 -164331356 - MLT2A2 LTR ERVL -3 551 1 22 0 0 0 chr4 37996995 37997017 -164331330 + AT_rich Low_complexity Low_complexity 1 22 0 1481 190 3 42 chr4 37997974 37998263 -164330084 + AluJo SINE Alu 1 278 -34 22 35 0 0 chr4 37998596 37998625 -164329722 + AT_rich Low_complexity Low_complexity 1 29 0 1974 188 35 31 chr4 37998922 37999471 -164328876 + MLT2A2 LTR ERVL 1 554 0 4549 33 5 5 chr4 38000256 38000825 -164327522 - L1P LINE L1 -1395 4751 4183 3211 44 0 0 chr4 38000825 38001213 -164327134 + L1PA5 LINE L1 5764 6152 -2 881 170 0 0 chr4 38002293 38002440 -164325907 - AluSx SINE Alu -6 306 160 500 146 0 0 chr4 38002440 38002522 -164325825 - AluSx SINE Alu -231 82 1 243 293 0 0 chr4 38002547 38002622 -164325725 + (TAG)n Simple_repeat Simple_repeat 1 75 0 953 175 68 142 chr4 38002638 38002963 -164325384 - AluJo SINE Alu 0 302 2 293 0 27 0 chr4 38004139 38004176 -164324171 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 343 314 60 43 chr4 38004479 38004664 -164323683 - MIR SINE MIR -1 261 74 1521 210 36 80 chr4 38004670 38005151 -164323196 + MLT1D LTR MaLR 5 463 -42 2325 55 7 0 chr4 38005151 38005444 -164322903 + AluY SINE Alu 1 295 -16 1521 210 36 80 chr4 38005444 38005486 -164322861 + MLT1D LTR MaLR 463 505 0 1560 213 3 0 chr4 38005526 38005812 -164322535 + AluJb SINE Alu 1 287 -25 357 345 9 0 chr4 38005831 38005941 -164322406 - L2 LINE L2 -15 3298 3188 334 239 22 33 chr4 38007275 38007367 -164320980 + MER20 DNA MER1_type 36 126 -93 273 116 0 0 chr4 38007359 38007402 -164320945 - MSTA LTR MaLR -371 57 15 * 24 53 0 0 chr4 38007449 38007487 -164320860 + AT_rich Low_complexity Low_complexity 1 38 0 1749 241 56 22 chr4 38007503 38007544 -164320803 - LTR40a LTR ERVL 0 519 481 2964 92 8 42 chr4 38007544 38008021 -164320326 - L1PA13 LINE L1 -1 6162 5702 1749 241 56 22 chr4 38008021 38008478 -164319869 - LTR40a LTR ERVL -38 481 4 24 0 0 0 chr4 38009302 38009326 -164319021 + AT_rich Low_complexity Low_complexity 1 24 0 1373 76 0 0 chr4 38009454 38009639 -164318708 - L1PA5 LINE L1 -2 6152 5968 23 54 0 0 chr4 38009713 38009750 -164318597 + AT_rich Low_complexity Low_complexity 1 37 0 219 300 50 0 chr4 38009943 38010003 -164318344 + L2 LINE L2 3190 3252 -61 234 308 13 0 chr4 38010025 38010103 -164318244 - MIR SINE MIR -67 195 117 405 0 0 0 chr4 38010855 38010900 -164317447 + (TG)n Simple_repeat Simple_repeat 2 46 0 2174 133 52 3 chr4 38012598 38012945 -164315402 + THE1B LTR MaLR 1 364 0 815 78 0 0 chr4 38013437 38013540 -164314807 - L1PA7 LINE L1 -26 6128 6026 * 6102 94 7 3 chr4 38013531 38014396 -164313951 - L1P LINE L1 -959 5187 4320 1175 108 0 0 chr4 38014391 38014557 -164313790 + L1P LINE L1 4141 4306 -1840 * 2134 77 7 7 chr4 38015175 38015486 -164312861 + AluY SINE Alu 1 311 0 489 191 21 15 chr4 38016020 38016214 -164312133 + L1MA7 LINE L1 6056 6280 -11 23 0 0 0 chr4 38016215 38016238 -164312109 + AT_rich Low_complexity Low_complexity 1 23 0 1876 155 134 8 chr4 38017000 38017380 -164310967 - MSTA LTR MaLR 0 428 1 252 167 0 0 chr4 38018515 38018563 -164309784 + (TA)n Simple_repeat Simple_repeat 2 49 0 2111 102 0 3 chr4 38018721 38019004 -164309343 - AluSx SINE Alu -30 282 1 247 367 0 0 chr4 38019380 38019489 -164308858 + LTR67 LTR ERVL 412 520 -37 384 291 51 61 chr4 38019611 38019907 -164308440 + HsTC2 DNA Tc2 491 783 -1115 1498 252 25 18 chr4 38020008 38020533 -164307814 + L1MCb LINE L1 702 1237 -4867 738 237 12 31 chr4 38020544 38020801 -164307546 + L1M4 LINE L1 3257 3508 -2638 1299 222 56 96 chr4 38021160 38021661 -164306686 - MLT1D LTR MaLR -2 503 23 449 315 72 18 chr4 38022353 38022575 -164305772 + MIR SINE MIR 8 241 -21 226 192 14 14 chr4 38022705 38022778 -164305569 + (TA)n Simple_repeat Simple_repeat 1 73 0 185 298 329 37 chr4 38023752 38023941 -164304406 - MIR SINE MIR 0 262 20 23 54 0 0 chr4 38024467 38024504 -164303843 + AT_rich Low_complexity Low_complexity 1 37 0 249 358 153 9 chr4 38025013 38025334 -164303013 - L2 LINE L2 -1093 2221 1855 1065 250 85 0 chr4 38025472 38025767 -164302580 + AluJo SINE Alu 1 317 0 219 357 101 33 chr4 38025811 38026147 -164302200 - L2 LINE L2 -1646 1668 1310 37620 40 2 3 chr4 38026895 38031212 -164297135 - L1PA3 LINE L1 0 6155 1838 2758 16 0 0 chr4 38031212 38031523 -164296824 + AluY SINE Alu 1 311 0 37620 40 2 3 chr4 38031523 38032647 -164295700 - L1PA3 LINE L1 -4317 1838 715 253 269 0 19 chr4 38032753 38032857 -164295490 + L1M4 LINE L1 2938 3039 -3107 24 0 0 0 chr4 38032915 38032939 -164295408 + AT_rich Low_complexity Low_complexity 1 24 0 28 79 0 0 chr4 38033234 38033297 -164295050 + AT_rich Low_complexity Low_complexity 1 63 0 1113 299 59 37 chr4 38033523 38034119 -164294228 + L1PA16 LINE L1 789 1397 -6177 11547 237 32 34 chr4 38034560 38036244 -164292103 + L1PA16 LINE L1 2182 3866 -3738 336 48 0 0 chr4 38036244 38036286 -164292061 + (TTCC)n Simple_repeat Simple_repeat 4 45 0 2306 95 13 0 chr4 38036287 38036592 -164291755 - AluSx SINE Alu -3 309 1 11547 237 32 34 chr4 38036592 38039171 -164289176 + L1PA16 LINE L1 3866 6445 -1159 1624 176 26 0 chr4 38039171 38039469 -164288878 + AluSx SINE Alu 3 307 0 11547 237 32 34 chr4 38039469 38040609 -164287738 + L1PA16 LINE L1 6445 7585 -19 236 250 11 0 chr4 38040638 38040726 -164287621 + L1M4 LINE L1 3877 3965 -2181 225 191 0 0 chr4 38041114 38041161 -164287186 + T-rich Low_complexity Low_complexity 2 48 0 2460 116 13 3 chr4 38041161 38041533 -164286814 - MER75 DNA T2_type -24 490 115 594 247 55 0 chr4 38041851 38041997 -164286350 - AluJb SINE Alu -30 282 129 953 209 140 51 chr4 38042508 38042843 -164285504 - MLT1A1 LTR MaLR 0 365 1 35 24 0 0 chr4 38043786 38043828 -164284519 + AT_rich Low_complexity Low_complexity 1 42 0 240 373 40 0 chr4 38043832 38043982 -164284365 - MIR SINE MIR -3 259 104 677 132 28 0 chr4 38044135 38044279 -164284068 + (TCTA)n Simple_repeat Simple_repeat 1 148 0 193 281 21 83 chr4 38044673 38044769 -164283578 + L2 LINE L2 3182 3271 -1 962 142 0 0 chr4 38044841 38044982 -164283365 + THE1B LTR MaLR 1 141 -223 272 237 82 89 chr4 38044977 38045112 -164283235 - MER41A LTR ERV1 -312 242 109 * 283 359 38 15 chr4 38046782 38046913 -164281434 - MIR3 SINE MIR -34 174 41 1595 192 53 36 chr4 38048459 38048818 -164279529 + MLT1A1 LTR MaLR 1 365 0 21 57 0 0 chr4 38051258 38051293 -164277054 + AT_rich Low_complexity Low_complexity 1 35 0 744 273 171 98 chr4 38051927 38052949 -164275398 + MER52A LTR ERV1 656 1752 -3 2025 132 7 0 chr4 38053190 38053485 -164274862 + AluSq SINE Alu 1 297 -16 559 194 0 0 chr4 38053914 38054012 -164274335 - L1M3 LINE L1 -560 5774 5677 * 3544 150 57 69 chr4 38054007 38054093 -164274254 + L1MA7 LINE L1 5401 5486 -805 5802 28 1 1 chr4 38054093 38054782 -164273565 - L1PA3 LINE L1 -3 6152 5464 3544 150 57 69 chr4 38054782 38055496 -164272851 + L1MA7 LINE L1 5486 6192 -99 1487 195 19 16 chr4 38055496 38055972 -164272375 + LTR64 LTR ERVK 1 541 -17 583 126 0 0 chr4 38055981 38056084 -164272263 + L1MA7 LINE L1 6189 6291 0 698 238 12 12 chr4 38058344 38058504 -164269843 - FRAM SINE Alu -2 164 5 30 27 0 0 chr4 38061822 38061859 -164266488 + AT_rich Low_complexity Low_complexity 1 37 0 286 280 80 40 chr4 38062524 38062649 -164265698 + HsTC2c DNA Tc2 10 139 -590 883 272 120 38 chr4 38063011 38063485 -164264862 + HsTC2c DNA Tc2 150 662 -67 230 328 49 25 chr4 38063652 38063774 -164264573 - L3 LINE CR1 -1 1576 1452 24 32 0 0 chr4 38064153 38064184 -164264163 + AT_rich Low_complexity Low_complexity 1 31 0 234 348 87 0 chr4 38064311 38064403 -164263944 + L2 LINE L2 3210 3309 -4 21 0 0 0 chr4 38064502 38064523 -164263824 + AT_rich Low_complexity Low_complexity 1 21 0 22 94 0 0 chr4 38065017 38065081 -164263266 + AT_rich Low_complexity Low_complexity 1 64 0 275 377 71 6 chr4 38065732 38065915 -164262432 - MIR SINE MIR -12 250 56 2181 92 0 7 chr4 38065917 38066220 -164262127 + AluSx SINE Alu 1 301 -11 2588 102 14 27 chr4 38066327 38066740 -164261607 - L1PA13 LINE L1 0 6163 5756 2412 84 3 0 chr4 38066741 38067064 -164261283 + L1P4 LINE L1 5399 5722 -446 476 259 73 36 chr4 38068027 38068247 -164260100 - L1ME1 LINE L1 -4 6162 5935 1184 273 70 16 chr4 38068260 38068759 -164259588 - L1ME1 LINE L1 -451 5715 5189 2552 250 82 79 chr4 38068782 38070637 -164257710 - L1ME LINE L1 -781 5299 3439 1283 208 53 101 chr4 38070737 38070944 -164257403 + LTR52 LTR ERVL 1 216 -205 3279 26 5 0 chr4 38070944 38071335 -164257012 + L1PA4 LINE L1 5763 6155 0 1283 208 53 101 chr4 38071335 38071446 -164256901 + LTR52 LTR ERVL 216 295 -126 2229 58 3 79 chr4 38071446 38071776 -164256571 - AluY SINE Alu -6 305 1 1283 208 53 101 chr4 38071776 38071893 -164256454 + LTR52 LTR ERVL 295 416 -5 604 219 77 102 chr4 38072086 38072684 -164255663 - L1ME LINE L1 -2978 3102 2520 21 89 0 0 chr4 38072850 38072906 -164255441 + AT_rich Low_complexity Low_complexity 1 56 0 211 254 30 30 chr4 38072950 38073084 -164255263 + (TA)n Simple_repeat Simple_repeat 2 135 0 432 302 34 13 chr4 38073502 38073651 -164254696 - MIR SINE MIR -29 233 82 206 32 32 0 chr4 38073880 38073911 -164254436 + (TG)n Simple_repeat Simple_repeat 2 33 0 639 311 95 28 chr4 38074578 38075184 -164253163 + L2 LINE L2 2608 3312 -1 21 0 0 0 chr4 38075654 38075675 -164252672 + AT_rich Low_complexity Low_complexity 1 21 0 613 269 52 54 chr4 38075843 38076290 -164252057 - L1ME LINE L1 -5056 1014 569 268 139 0 0 chr4 38076520 38076563 -164251784 + MLT1A1 LTR MaLR 3 45 -329 * 508 268 77 12 chr4 38076553 38076721 -164251626 + MLT1A1 LTR MaLR 180 358 -7 404 333 108 32 chr4 38076752 38077130 -164251217 - L1ME LINE L1 -5652 418 12 216 324 42 14 chr4 38077360 38077431 -164250916 - L2 LINE L2 -21 3251 3179 1773 159 3 3 chr4 38077593 38077876 -164250471 + AluSx SINE Alu 6 288 -24 493 310 122 5 chr4 38079330 38079527 -164248820 - MIR SINE MIR -25 237 18 225 154 0 0 chr4 38079542 38079581 -164248766 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 26 30 0 0 chr4 38079739 38079772 -164248575 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr4 38080210 38080233 -164248114 + AT_rich Low_complexity Low_complexity 1 23 0 43 88 0 0 chr4 38081028 38081141 -164247206 + AT_rich Low_complexity Low_complexity 1 113 0 2345 86 0 0 chr4 38081249 38081553 -164246794 + AluY SINE Alu 1 304 -7 263 295 30 54 chr4 38081675 38081841 -164246506 + L1ME3A LINE L1 6009 6170 0 1662 150 3 31 chr4 38082627 38082921 -164245426 + AluSx SINE Alu 1 286 -26 216 0 0 0 chr4 38082921 38082945 -164245402 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 337 335 135 0 chr4 38083042 38083212 -164245135 - MIR SINE MIR -33 229 37 379 235 10 0 chr4 38084030 38084128 -164244219 + MER53 DNA DNA 1 99 -90 291 93 0 0 chr4 38084719 38084762 -164243585 + (T)n Simple_repeat Simple_repeat 1 43 0 222 91 0 0 chr4 38085078 38085111 -164243236 + (TG)n Simple_repeat Simple_repeat 1 33 0 186 103 0 0 chr4 38085217 38085246 -164243101 + (T)n Simple_repeat Simple_repeat 1 29 0 2408 74 3 0 chr4 38085479 38085789 -164242558 + AluY SINE Alu 1 311 0 23 33 0 0 chr4 38085957 38085987 -164242360 + AT_rich Low_complexity Low_complexity 1 30 0 260 377 77 14 chr4 38087060 38087267 -164241080 + L2 LINE L2 2632 2851 -463 222 295 144 29 chr4 38087524 38087663 -164240684 + L2 LINE L2 3151 3305 -8 197 206 0 16 chr4 38087861 38087924 -164240423 + (TA)n Simple_repeat Simple_repeat 1 62 0 * 213 65 0 0 chr4 38087923 38087954 -164240393 + (GA)n Simple_repeat Simple_repeat 2 32 0 207 190 0 0 chr4 38088148 38088206 -164240141 + GA-rich Low_complexity Low_complexity 2 59 0 305 146 0 0 chr4 38088224 38088272 -164240075 + MLT2B1 LTR ERVL 473 520 0 2408 84 0 0 chr4 38088757 38089068 -164239279 - AluY SINE Alu 0 311 1 375 73 0 0 chr4 38089228 38089283 -164239064 + (CA)n Simple_repeat Simple_repeat 2 56 0 197 259 37 83 chr4 38089369 38089477 -164238870 - L2 LINE L2 -58 3255 3153 1341 332 143 19 chr4 38089487 38090613 -164237734 + L2 LINE L2 532 1797 -1517 312 256 0 33 chr4 38090616 38090706 -164237641 - L1MC4 LINE L1 -1339 6703 6617 370 187 0 53 chr4 38090708 38090858 -164237489 + (TA)n Simple_repeat Simple_repeat 2 143 0 1021 307 130 8 chr4 38090860 38091368 -164236979 + L2 LINE L2 1790 2359 -955 279 0 0 0 chr4 38091482 38091513 -164236834 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr4 38092180 38092211 -164236136 + AT_rich Low_complexity Low_complexity 1 31 0 4379 187 10 1 chr4 38093101 38093969 -164234378 - L1 LINE L1 -1040 5106 4231 191 59 0 29 chr4 38094283 38094317 -164234030 + (TTTAG)n Simple_repeat Simple_repeat 3 35 0 8879 233 13 18 chr4 38094481 38097955 -164230392 - L1PA16 LINE L1 -5 6812 3358 1990 186 36 32 chr4 38097955 38098502 -164229845 - MLT2A2 LTR ERVL 0 554 1 301 250 0 0 chr4 38098510 38098574 -164229773 - L1 LINE L1 -3439 2707 2644 431 345 76 36 chr4 38099215 38099892 -164228455 - L1PA16 LINE L1 -5276 1511 134 1111 174 29 19 chr4 38099898 38100168 -164228179 + MLT2A2 LTR ERVL 271 445 -8 29 70 0 0 chr4 38100168 38100225 -164228122 + AT_rich Low_complexity Low_complexity 1 57 0 186 93 23 81 chr4 38100234 38100320 -164228027 + (TTATA)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr4 38100320 38100341 -164228006 + AT_rich Low_complexity Low_complexity 1 21 0 2821 96 20 8 chr4 38100347 38100741 -164227606 - MLT2A1 LTR ERVL -45 399 1 11076 204 46 57 chr4 38101186 38103355 -164224992 + L1MA4A LINE L1 2 2195 -4663 3388 37 2 0 chr4 38103355 38103763 -164224584 - L1PA3 LINE L1 -1 6154 5746 11076 204 46 57 chr4 38103763 38108080 -164220267 + L1MA4A LINE L1 2195 6377 -481 1567 173 27 13 chr4 38108080 38108380 -164219967 - AluJb SINE Alu -6 306 3 11076 204 46 57 chr4 38108380 38108851 -164219496 + L1MA4A LINE L1 6377 6852 -6 207 184 0 0 chr4 38108949 38108987 -164219360 + (CATA)n Simple_repeat Simple_repeat 4 41 0 1388 207 47 55 chr4 38109353 38109735 -164218612 - MLT1B LTR MaLR -11 379 1 21 0 0 0 chr4 38109991 38110012 -164218335 + AT_rich Low_complexity Low_complexity 1 21 0 195 310 62 18 chr4 38110323 38110436 -164217911 + MIR SINE MIR 76 193 -69 299 380 31 18 chr4 38110882 38111045 -164217302 - MIR SINE MIR -74 188 24 634 221 89 57 chr4 38111250 38111566 -164216781 + L1MCa LINE L1 2063 2388 -4038 * 1232 289 36 6 chr4 38111561 38112032 -164216315 + L1MCa LINE L1 2628 3112 -3314 1914 213 34 14 chr4 38112032 38112474 -164215873 + L1MC3 LINE L1 7071 7521 -264 598 163 0 0 chr4 38112476 38112574 -164215773 + AluJ/FLAM SINE Alu 1 98 -214 959 233 47 0 chr4 38112795 38113053 -164215294 + L1MC3 LINE L1 7508 7777 -8 1619 159 20 38 chr4 38113642 38113988 -164214359 - L1MC1 LINE L1 -1 6332 5993 726 209 81 12 chr4 38114096 38114268 -164214079 - MLT1E1 LTR MaLR 0 654 471 300 172 23 0 chr4 38114264 38114329 -164214018 - MLT1E LTR MaLR -536 57 5 * 272 392 12 12 chr4 38114363 38114529 -164213818 + MIR SINE MIR 14 179 -83 615 292 70 103 chr4 38115561 38116146 -164212201 + L2 LINE L2 2279 2844 -470 1259 144 50 67 chr4 38116242 38116540 -164211807 - L1MA5 LINE L1 0 6300 6008 228 231 19 0 chr4 38116771 38116823 -164211524 + (CA)n Simple_repeat Simple_repeat 2 54 0 221 402 103 0 chr4 38117087 38117174 -164211173 + MER91A DNA MER1_type 94 189 -7 2158 147 28 3 chr4 38117175 38117530 -164210817 - THE1B LTR MaLR 0 364 1 194 315 46 83 chr4 38118016 38118124 -164210223 + L2 LINE L2 3057 3160 -112 2443 84 0 0 chr4 38118633 38118942 -164209405 + AluY SINE Alu 1 309 -2 414 302 59 22 chr4 38121604 38121826 -164206521 + L2 LINE L2 1708 1937 -1377 737 326 67 20 chr4 38121831 38122322 -164206025 - LTR33 LTR ERVL 0 521 8 259 306 27 0 chr4 38122344 38122455 -164205892 + L2 LINE L2 1974 2087 -1227 1615 243 6 31 chr4 38122605 38122963 -164205384 - MER70B LTR ERVL -229 349 1 356 341 0 0 chr4 38123156 38123282 -164205065 - LTR33 LTR ERVL -385 136 11 193 293 208 9 chr4 38123451 38123557 -164204790 - MIR SINE MIR -57 205 79 634 272 68 34 chr4 38123621 38123827 -164204520 - MIR SINE MIR -25 237 25 1799 203 6 0 chr4 38125196 38125511 -164202836 + L1PA13 LINE L1 142 458 -6329 2044 180 38 44 chr4 38125511 38126079 -164202268 + MLT2A2 LTR ERVL 1 552 -2 1352 235 33 0 chr4 38126080 38126352 -164201995 + L1PA13 LINE L1 453 733 -6054 1957 236 102 30 chr4 38126355 38126405 -164201942 + L1PA13 LINE L1 758 803 -5984 2066 152 11 16 chr4 38126405 38126780 -164201567 + THE1C LTR MaLR 1 373 -2 1957 236 102 30 chr4 38126780 38127527 -164200820 + L1PA13 LINE L1 803 1758 -5029 578 259 149 92 chr4 38128324 38128565 -164199782 - MLT1H LTR MaLR -15 540 314 519 31 0 0 chr4 38128565 38128630 -164199717 + (TC)n Simple_repeat Simple_repeat 1 65 0 578 259 149 92 chr4 38128630 38128868 -164199479 - MLT1H LTR MaLR -241 314 38 2661 140 12 0 chr4 38129228 38129642 -164198705 - MSTA LTR MaLR -9 419 1 695 195 39 0 chr4 38129687 38129815 -164198532 + L1PA13 LINE L1 1 133 -6654 15273 210 38 19 chr4 38129915 38133713 -164194634 + L1PA13 LINE L1 1754 5648 -1149 1912 169 129 0 chr4 38133713 38134092 -164194255 - MSTA LTR MaLR 0 428 1 15273 210 38 19 chr4 38134092 38134190 -164194157 + L1PA13 LINE L1 5648 5743 -1054 701 116 78 0 chr4 38134194 38134323 -164194024 + L1PA13 LINE L1 6676 6814 0 23 0 0 0 chr4 38134487 38134510 -164193837 + AT_rich Low_complexity Low_complexity 1 23 0 1567 214 84 27 chr4 38135218 38135657 -164192690 - MLT1C LTR MaLR -2 465 2 1207 232 91 28 chr4 38136213 38136532 -164191815 + MER58B DNA MER1_type 2 340 -1 301 321 135 42 chr4 38137777 38137970 -164190377 + MIR SINE MIR 26 236 -26 294 338 113 50 chr4 38138330 38138570 -164189777 + L3 LINE CR1 1322 1576 -1 234 0 0 0 chr4 38138617 38138643 -164189704 + (CA)n Simple_repeat Simple_repeat 1 26 0 351 60 0 0 chr4 38138643 38138693 -164189654 + (GA)n Simple_repeat Simple_repeat 1 50 0 21 95 0 0 chr4 38139327 38139390 -164188957 + AT_rich Low_complexity Low_complexity 1 63 0 10724 179 85 29 chr4 38140145 38144273 -164184074 - L1MA3 LINE L1 0 7724 3347 4814 111 51 19 chr4 38144594 38145403 -164182944 - L1MA3 LINE L1 -4204 3361 2527 5003 189 26 13 chr4 38145406 38146325 -164182022 - L1MA3 LINE L1 -6619 946 16 226 299 154 17 chr4 38146712 38146829 -164181518 - L2 LINE L2 -4 3309 3177 378 17 51 0 chr4 38146861 38146920 -164181427 + (TA)n Simple_repeat Simple_repeat 1 62 0 294 403 22 0 chr4 38146961 38147095 -164181252 - L2 LINE L2 -261 3052 2916 226 352 77 25 chr4 38147232 38147428 -164180919 + MLT1L LTR MaLR 35 240 -375 1309 305 61 59 chr4 38147469 38148697 -164179650 + L1PA12 LINE L1 998 2187 -5394 4473 234 31 20 chr4 38148700 38149925 -164178422 + L1P LINE L1 3001 4239 -1907 1326 299 86 44 chr4 38149990 38151144 -164177203 - L1MEc LINE L1 -3930 2466 1265 2436 191 88 53 chr4 38151202 38151842 -164176505 + L1MB5 LINE L1 5511 6172 -2 338 290 149 8 chr4 38152073 38152321 -164176026 - L1MC4a LINE L1 -1934 5874 5592 * 4823 180 13 40 chr4 38152317 38153166 -164175181 - L1PA15 LINE L1 0 6165 5396 2157 124 0 3 chr4 38153166 38153473 -164174874 - AluY SINE Alu -3 308 3 4823 180 13 40 chr4 38153473 38154410 -164173937 - L1PA15 LINE L1 -769 5396 4435 1728 244 75 24 chr4 38154422 38154855 -164173492 + L1M4 LINE L1 2467 2955 -3191 2025 116 7 3 chr4 38154855 38155158 -164173189 - AluY SINE Alu -7 304 1 1728 244 75 24 chr4 38155158 38155470 -164172877 + L1M4 LINE L1 2955 3250 -2896 1652 267 80 35 chr4 38155477 38156285 -164172062 + L1M4 LINE L1 3268 4112 -2034 2014 118 3 0 chr4 38156679 38156983 -164171364 - AluY SINE Alu -6 305 1 349 349 64 23 chr4 38157309 38157527 -164170820 + MIR SINE MIR 34 260 -2 2367 53 0 31 chr4 38158183 38158504 -164169843 - AluY SINE Alu 0 311 1 2635 135 11 24 chr4 38159906 38160357 -164167990 - MER65A LTR ERV1 0 445 1 2093 134 0 0 chr4 38161457 38161748 -164166599 - AluSx SINE Alu -19 293 3 304 266 46 18 chr4 38162245 38162428 -164165919 - L1MC4a LINE L1 -285 5885 5698 22 0 0 0 chr4 38163105 38163127 -164165220 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr4 38163243 38163281 -164165066 + AT_rich Low_complexity Low_complexity 1 38 0 4058 152 11 18 chr4 38164957 38165673 -164162674 + MER50 LTR ERV1 1 711 -23 1937 93 12 0 chr4 38166032 38166320 -164162027 - AluSp SINE Alu 0 312 22 218 254 0 28 chr4 38168146 38168217 -164160130 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 30 0 0 0 chr4 38168518 38168548 -164159799 + AT_rich Low_complexity Low_complexity 1 30 0 345 279 0 0 chr4 38168849 38168935 -164159412 - MIR SINE MIR -73 189 104 21 57 0 0 chr4 38168953 38168988 -164159359 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr4 38169117 38169142 -164159205 + AT_rich Low_complexity Low_complexity 1 25 0 349 302 36 14 chr4 38169291 38169430 -164158917 - L2 LINE L2 -7 3306 3165 256 132 0 0 chr4 38169433 38169471 -164158876 - MLT2C2 LTR ERVL 0 464 427 523 0 30 0 chr4 38169471 38169538 -164158809 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 464 70 12 116 chr4 38169539 38169625 -164158722 + MADE1 DNA Mariner 1 77 -3 706 272 71 49 chr4 38169625 38170132 -164158215 - MLT2B1 LTR ERVL -2 518 1 210 395 117 0 chr4 38170291 38170453 -164157894 - L2 LINE L2 -408 2906 2726 5451 222 117 9 chr4 38173099 38174823 -164153524 + L1MA10 LINE L1 2982 4891 -1255 4004 174 33 62 chr4 38174824 38175788 -164152559 + L1MA10 LINE L1 5266 6201 -133 34 55 0 0 chr4 38175832 38175887 -164152460 + AT_rich Low_complexity Low_complexity 1 55 0 500 160 0 77 chr4 38176302 38176496 -164151851 + G-rich Low_complexity Low_complexity 1 179 0 286 259 169 24 chr4 38176616 38176906 -164151441 + L1M4 LINE L1 2686 3017 -3129 266 299 28 21 chr4 38177063 38177207 -164151140 + L1M4 LINE L1 2427 2571 -3575 278 235 10 0 chr4 38177268 38177370 -164150977 + GA-rich Low_complexity Low_complexity 3 105 0 752 253 13 0 chr4 38177548 38177706 -164150641 - MLT1E LTR MaLR -433 160 1 320 303 40 10 chr4 38177914 38178013 -164150334 - MIR SINE MIR -115 147 46 13058 205 31 14 chr4 38178484 38183492 -164144855 + L1MA6 LINE L1 2615 7715 -4 321 292 79 35 chr4 38184214 38184244 -164144103 - LTR65 LTR ERV1 -121 548 521 869 192 165 52 chr4 38184244 38184572 -164143775 + MLT1A1 LTR MaLR 1 365 0 321 292 79 35 chr4 38184572 38184743 -164143604 - LTR65 LTR ERV1 -148 521 338 6133 223 50 63 chr4 38185347 38185981 -164142366 + MER52A LTR ERV1 1 641 -1114 3992 87 128 26 chr4 38185981 38186605 -164141742 - LTR12 LTR ERV1 0 688 1 6133 223 50 63 chr4 38186605 38187806 -164140541 + MER52A LTR ERV1 641 1736 -19 2116 140 11 32 chr4 38187806 38188178 -164140169 - THE1B LTR MaLR 0 364 1 6133 223 50 63 chr4 38188178 38188198 -164140149 + MER52A LTR ERV1 1736 1755 0 23 0 0 0 chr4 38188345 38188368 -164139979 + AT_rich Low_complexity Low_complexity 1 23 0 270 279 29 48 chr4 38188519 38188623 -164139724 + L1ME LINE L1 4743 4844 -1302 46 54 0 0 chr4 38188635 38188709 -164139638 + AT_rich Low_complexity Low_complexity 1 74 0 311 333 68 23 chr4 38188717 38188894 -164139453 + L1ME LINE L1 4831 5015 -1131 228 289 47 0 chr4 38189188 38189316 -164139031 + L1ME LINE L1 5348 5481 -683 22 0 0 0 chr4 38191132 38191154 -164137193 + AT_rich Low_complexity Low_complexity 1 22 0 1609 169 52 21 chr4 38192536 38192618 -164135729 + AluJb SINE Alu 3 81 -231 1857 159 21 26 chr4 38192618 38192995 -164135352 - THE1C LTR MaLR 0 375 1 1609 169 52 21 chr4 38192995 38193202 -164135145 + AluJb SINE Alu 81 301 -11 366 80 0 0 chr4 38193202 38193252 -164135095 + (GA)n Simple_repeat Simple_repeat 1 50 0 341 301 80 55 chr4 38193301 38193508 -164134839 - L2 LINE L2 -4 3309 3092 1966 146 33 33 chr4 38193508 38193871 -164134476 + THE1B LTR MaLR 2 364 0 341 301 80 55 chr4 38193871 38193952 -164134395 - L2 LINE L2 -221 3092 3014 355 267 119 23 chr4 38194087 38194263 -164134084 + HAL1 LINE L1 794 986 -1521 231 286 175 13 chr4 38194938 38195092 -164133255 - MLT1L LTR MaLR -430 185 7 317 379 38 8 chr4 38197300 38197432 -164130915 + MIR SINE MIR 22 157 -105 582 152 18 0 chr4 38197938 38198050 -164130297 - AluSg/x SINE Alu -7 302 189 21 0 0 0 chr4 38199365 38199386 -164128961 + AT_rich Low_complexity Low_complexity 1 21 0 878 234 141 99 chr4 38200543 38201226 -164127121 + LTR50 LTR ERVL 2 795 0 2337 302 144 34 chr4 38203024 38204221 -164124126 + L2 LINE L2 1653 3025 -288 2193 101 7 7 chr4 38204221 38204528 -164123819 + AluSc SINE Alu 2 308 -1 2337 302 144 34 chr4 38204528 38204759 -164123588 + L2 LINE L2 3025 3229 -84 1123 88 12 0 chr4 38205371 38205531 -164122816 - L1PA7 LINE L1 -2 6152 5991 666 235 12 31 chr4 38205838 38206000 -164122347 + MER67D LTR ERV1 1 159 -502 * 1202 245 62 58 chr4 38205997 38206466 -164121881 + MLT2B1 LTR ERVL 10 480 -40 269 70 0 158 chr4 38206494 38206551 -164121796 + MLT2B1 LTR ERVL 473 520 0 1353 251 99 12 chr4 38206551 38207003 -164121344 + MER67D LTR ERV1 58 509 -5 338 243 0 0 chr4 38207091 38207165 -164121182 + MER45 DNA AcHobo 1507 1580 -1 278 348 163 26 chr4 38207631 38208197 -164120150 - L2 LINE L2 -966 2348 1706 2556 109 14 0 chr4 38209478 38209846 -164118501 - THE1C LTR MaLR 0 375 3 1981 129 0 22 chr4 38210509 38210826 -164117521 - AluSg SINE Alu 0 310 1 391 326 32 47 chr4 38211076 38211266 -164117081 + MIR3 SINE MIR 18 204 -4 345 208 0 0 chr4 38211669 38211746 -164116601 + (CATA)n Simple_repeat Simple_repeat 2 78 0 7605 26 0 0 chr4 38214165 38215156 -164113191 - L1PA3 LINE L1 -3 6152 5161 11855 36 3 0 chr4 38215156 38216599 -164111748 - L1PA3 LINE L1 -1300 4846 3400 5986 32 0 0 chr4 38216600 38217343 -164111004 + L1PA3 LINE L1 2656 3398 -2748 2210 93 0 10 chr4 38217392 38217693 -164110654 + AluY SINE Alu 1 298 -13 360 0 0 0 chr4 38217921 38217961 -164110386 + (TG)n Simple_repeat Simple_repeat 2 41 0 1316 199 55 43 chr4 38217969 38218367 -164109980 - MLT2B1 LTR ERVL -68 452 1 189 0 0 0 chr4 38218718 38218739 -164109608 + (TTTC)n Simple_repeat Simple_repeat 2 22 0 2335 93 0 3 chr4 38218746 38219056 -164109291 - AluY SINE Alu -2 309 1 330 300 12 0 chr4 38220604 38220684 -164107663 + MER5A DNA MER1_type 10 90 -99 239 313 37 37 chr4 38221219 38221353 -164106994 - MLT1L LTR MaLR -333 282 149 27 49 0 0 chr4 38223359 38223400 -164104947 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr4 38224546 38224569 -164103778 + AT_rich Low_complexity Low_complexity 1 23 0 1327 222 5 81 chr4 38227281 38227651 -164100696 - MLT1A1 LTR MaLR 0 365 24 325 310 74 25 chr4 38228469 38228645 -164099702 - MIR SINE MIR -62 146 10 348 24 0 0 chr4 38228779 38228820 -164099527 + (CA)n Simple_repeat Simple_repeat 2 42 0 272 285 49 24 chr4 38229643 38229766 -164098581 - MLT1K LTR MaLR 0 588 463 10326 203 44 11 chr4 38230226 38233698 -164094649 - L1PA16 LINE L1 0 6166 2585 27 29 0 0 chr4 38233853 38233887 -164094460 + AT_rich Low_complexity Low_complexity 1 34 0 244 292 73 0 chr4 38233904 38234000 -164094347 - MIR SINE MIR -115 147 45 1367 296 118 35 chr4 38234532 38235271 -164093076 + L2 LINE L2 1630 2429 -885 306 315 27 9 chr4 38235321 38235432 -164092915 + L2 LINE L2 2945 3057 -256 329 235 30 121 chr4 38235464 38235530 -164092817 + L2 LINE L2 3159 3229 -84 2494 59 7 0 chr4 38235530 38235834 -164092513 - AluY SINE Alu -3 308 3 329 235 30 121 chr4 38235834 38235933 -164092414 + L2 LINE L2 3229 3309 -4 1508 158 4 8 chr4 38236446 38236692 -164091655 + AluSx SINE Alu 1 245 -67 875 245 20 10 chr4 38236871 38237071 -164091276 - MLT1A2 LTR MaLR 0 374 173 252 154 0 0 chr4 38237071 38237123 -164091224 + GA-rich Low_complexity Low_complexity 2 53 0 525 266 59 41 chr4 38237133 38237302 -164091045 - MLT1A2 LTR MaLR -218 172 1 1259 208 133 11 chr4 38237432 38237889 -164090458 + MER114 LTR ERV 65 577 -71 1333 161 0 18 chr4 38239108 38239326 -164089021 + AluSx SINE Alu 1 214 -98 250 283 239 9 chr4 38240014 38240127 -164088220 + MLT1K LTR MaLR 146 284 -304 2362 66 10 0 chr4 38242011 38242313 -164086034 + AluY SINE Alu 1 305 -6 22 99 0 0 chr4 38242462 38242533 -164085814 + AT_rich Low_complexity Low_complexity 1 71 0 946 184 69 175 chr4 38242605 38243056 -164085291 - MER67D LTR ERV1 0 514 112 1479 218 156 7 chr4 38243056 38243460 -164084887 + MSTB1-int LTR MaLR 437 900 -751 453 162 0 0 chr4 38243465 38243533 -164084814 - LTR12 LTR ERV1 -30 684 617 355 235 59 0 chr4 38243533 38243635 -164084712 - LTR30 LTR ERV1 -70 652 545 1392 145 8 8 chr4 38243742 38243976 -164084371 - LTR12 LTR ERV1 -480 234 1 3135 118 2 0 chr4 38243976 38244424 -164083923 - HERV9 LTR ERV1 0 8399 7951 * 25318 110 27 20 chr4 38244393 38249055 -164079292 - HERV9 LTR ERV1 -3544 4855 80 660 156 22 28 chr4 38249055 38249202 -164079145 - LTR12 LTR ERV1 0 714 301 248 258 32 21 chr4 38249202 38249295 -164079052 - LTR30 LTR ERV1 -79 643 550 369 197 22 112 chr4 38249295 38249473 -164078874 - LTR12 LTR ERV1 -430 284 123 264 231 0 0 chr4 38249477 38249529 -164078818 - LTR30 LTR ERV1 -670 52 1 3587 200 45 25 chr4 38249531 38249833 -164078514 + MSTB1-int LTR MaLR 880 1175 -476 1682 154 6 60 chr4 38249833 38250164 -164078183 + AluSq SINE Alu 1 313 0 3587 200 45 25 chr4 38250164 38250615 -164077732 + MSTB1-int LTR MaLR 1175 1648 -3 2351 171 26 14 chr4 38250623 38251050 -164077297 + MSTB1 LTR MaLR 1 432 0 183 283 50 33 chr4 38251258 38251318 -164077029 - MIR SINE MIR -119 89 29 472 267 99 91 chr4 38251432 38251806 -164076541 - Charlie8 DNA MER1_type -2198 219 1 348 24 0 0 chr4 38252286 38252327 -164076020 + (CA)n Simple_repeat Simple_repeat 2 42 0 264 30 0 0 chr4 38253623 38253656 -164074691 + (CA)n Simple_repeat Simple_repeat 2 34 0 238 313 0 0 chr4 38254222 38254289 -164074058 + GA-rich Low_complexity Low_complexity 4 70 0 25 0 0 0 chr4 38255266 38255291 -164073056 + AT_rich Low_complexity Low_complexity 1 25 0 553 345 60 4 chr4 38255625 38255857 -164072490 + MIR SINE MIR 8 252 -10 937 179 79 5 chr4 38256108 38256396 -164071951 + MLT1C LTR MaLR 5 353 -114 366 206 174 0 chr4 38256665 38256757 -164071590 + MLT1C LTR MaLR 348 455 -12 477 301 46 18 chr4 38256892 38257102 -164071245 - LTR33 LTR ERVL 0 521 300 352 272 22 22 chr4 38257210 38257346 -164071001 - LTR33 LTR ERVL -374 147 12 32 0 0 0 chr4 38257419 38257451 -164070896 + AT_rich Low_complexity Low_complexity 1 32 0 1513 189 7 11 chr4 38257647 38257922 -164070425 - AluJo SINE Alu -20 292 19 272 207 117 72 chr4 38257990 38258101 -164070246 - MLT1L LTR MaLR -374 241 126 216 227 187 0 chr4 38258329 38258404 -164069943 + MIR SINE MIR 58 146 -62 292 268 41 73 chr4 38258595 38258718 -164069629 + MIR3 SINE MIR 41 159 -49 1556 116 72 108 chr4 38260285 38260674 -164067673 + THE1C LTR MaLR 1 375 0 1831 188 23 67 chr4 38262222 38262270 -164066077 - MLT2D LTR ERVL 0 414 365 279 0 0 0 chr4 38262270 38262301 -164066046 + (CA)n Simple_repeat Simple_repeat 2 32 0 1831 188 23 67 chr4 38262301 38262683 -164065664 - MLT2D LTR ERVL -49 365 3 1135 281 84 57 chr4 38262693 38263206 -164065141 - MER77 LTR ERV1 -13 592 66 195 273 45 15 chr4 38264982 38265048 -164063299 - MIR SINE MIR -107 155 88 193 188 0 175 chr4 38267144 38267224 -164061123 + MIR SINE MIR 122 187 -75 267 304 65 22 chr4 38268091 38268229 -164060118 + L2 LINE L2 2289 2432 -882 354 323 38 111 chr4 38268266 38268607 -164059740 - L2 LINE L2 -19 3253 2938 193 375 88 22 chr4 38269643 38269779 -164058568 - MIR3 SINE MIR -42 166 22 2746 134 7 2 chr4 38269827 38270251 -164058096 + MSTA LTR MaLR 3 428 0 325 307 106 17 chr4 38270295 38270474 -164057873 + L2 LINE L2 854 1048 -2266 286 265 78 10 chr4 38270559 38270661 -164057686 + MLT1J LTR MaLR 89 197 -314 2624 295 101 58 chr4 38270876 38273025 -164055322 + L2 LINE L2 1058 3309 -4 391 271 20 94 chr4 38274971 38275174 -164053173 - MLT1J2 LTR MaLR 0 450 263 2117 123 0 13 chr4 38275725 38276041 -164052306 - AluSx SINE Alu 0 312 1 204 97 0 0 chr4 38276121 38276152 -164052195 + (CA)n Simple_repeat Simple_repeat 2 32 0 471 18 0 0 chr4 38277687 38277743 -164050604 + (TA)n Simple_repeat Simple_repeat 1 56 0 606 293 40 13 chr4 38277848 38278073 -164050274 - L1ME LINE L1 -330 5791 5561 13998 154 20 8 chr4 38278734 38282154 -164046193 + L1PA12 LINE L1 2658 6113 -55 280 347 17 19 chr4 38282843 38282983 -164045364 - MER5B DNA MER1_type -36 142 16 30 45 0 0 chr4 38283065 38283109 -164045238 + AT_rich Low_complexity Low_complexity 1 44 0 316 300 58 52 chr4 38283244 38283548 -164044799 - HAL1b LINE L1 -677 1674 365 280 252 28 28 chr4 38283557 38283664 -164044683 - HAL1 LINE L1 -1125 1382 1276 432 256 0 0 chr4 38283793 38283883 -164044464 + MER21B LTR ERV1 1 90 -773 1918 258 33 36 chr4 38283907 38284485 -164043862 + MER21B LTR ERV1 20 595 -268 1096 256 98 17 chr4 38284505 38284911 -164043436 + LTR47B LTR ERVL 5 443 0 306 272 0 66 chr4 38284958 38285094 -164043253 + LTR47B-int LTR ERVL 43 169 -5174 582 307 43 46 chr4 38286499 38286848 -164041499 + LTR57-int LTR ERVL 1718 2065 -3278 426 315 36 75 chr4 38286864 38287488 -164040859 + LTR57-int LTR ERVL 2313 2820 -2523 433 328 19 14 chr4 38287769 38288065 -164040282 + LTR57-int LTR ERVL 3130 3408 -1935 1390 217 57 41 chr4 38289195 38289614 -164038733 + LTR47B LTR ERVL 18 443 0 749 232 57 10 chr4 38289630 38289824 -164038523 + MER21B LTR ERV1 613 815 -48 243 0 0 0 chr4 38290043 38290070 -164038277 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2018 132 3 10 chr4 38290072 38290376 -164037971 - AluSx SINE Alu -10 302 1 27 49 0 0 chr4 38290963 38291004 -164037343 + AT_rich Low_complexity Low_complexity 1 41 0 914 257 99 7 chr4 38291147 38291187 -164037160 - MLT2D LTR ERVL 0 414 379 183 42 0 0 chr4 38291187 38291211 -164037136 + (TG)n Simple_repeat Simple_repeat 2 25 0 914 257 99 7 chr4 38291211 38291368 -164036979 - MLT2D LTR ERVL -35 379 238 201 39 0 0 chr4 38291368 38291394 -164036953 + (TTG)n Simple_repeat Simple_repeat 2 27 0 914 257 99 7 chr4 38291394 38291498 -164036849 - MLT2D LTR ERVL -176 238 84 279 302 108 41 chr4 38291556 38291722 -164036625 + MIR SINE MIR 34 219 -43 2004 133 109 15 chr4 38291976 38292306 -164036041 + THE1B LTR MaLR 1 361 -3 10735 117 14 3 chr4 38292309 38293871 -164034476 + THE1B-int LTR MaLR 1 1580 0 2134 132 73 15 chr4 38293871 38294212 -164034135 + THE1B LTR MaLR 1 361 -3 580 264 67 36 chr4 38294214 38294407 -164033940 + MIR SINE MIR 52 250 -12 21 0 0 0 chr4 38295708 38295729 -164032618 + AT_rich Low_complexity Low_complexity 1 21 0 1326 220 95 35 chr4 38296685 38297116 -164031231 + MSTB2 LTR MaLR 1 457 0 193 274 68 82 chr4 38298951 38299097 -164029250 + MIR SINE MIR 73 216 -46 668 251 112 60 chr4 38300148 38300399 -164027948 - MLT1H1 LTR MaLR 0 555 292 297 203 16 0 chr4 38300585 38300649 -164027698 + AluJ/FLAM SINE Alu 1 65 -237 239 206 44 15 chr4 38300772 38300840 -164027507 - MLT1H1 LTR MaLR -484 71 2 28 71 0 0 chr4 38301864 38301920 -164026427 + AT_rich Low_complexity Low_complexity 1 56 0 256 305 54 84 chr4 38302148 38302387 -164025960 + L2 LINE L2 2958 3189 -124 376 278 32 29 chr4 38302570 38302766 -164025581 + L1MC4 LINE L1 6730 6934 -889 1530 269 45 31 chr4 38302792 38303343 -164025004 + L1MCb LINE L1 1 559 -5486 2741 221 83 15 chr4 38303449 38304671 -164023676 + L1MCb LINE L1 568 1967 -4597 589 281 25 21 chr4 38304759 38305001 -164023346 + L1MC5 LINE L1 6974 7216 -745 310 291 51 23 chr4 38305160 38305335 -164023012 + L1MC5 LINE L1 7306 7485 -476 232 274 71 71 chr4 38305338 38305718 -164022629 + L1MC5 LINE L1 7538 7917 -44 24 77 0 0 chr4 38306195 38306247 -164022100 + AT_rich Low_complexity Low_complexity 1 52 0 212 100 25 0 chr4 38306613 38306653 -164021694 + (TA)n Simple_repeat Simple_repeat 1 41 0 2664 51 0 0 chr4 38307634 38307945 -164020402 - AluY SINE Alu 0 311 1 297 0 0 0 chr4 38308093 38308126 -164020221 + (TG)n Simple_repeat Simple_repeat 2 34 0 327 285 58 7 chr4 38308273 38308410 -164019937 - L1MEd LINE L1 -5908 211 68 2507 202 63 16 chr4 38308588 38309260 -164019087 - Tigger7 DNA MER2_type -1 2586 3 288 87 0 0 chr4 38309896 38309942 -164018405 + L1PA6 LINE L1 6109 6154 0 316 340 16 58 chr4 38312235 38312426 -164015921 - MER5A DNA MER1_type -6 183 1 191 205 128 0 chr4 38312460 38312499 -164015848 - L2 LINE L2 -19 3253 3210 1565 189 89 50 chr4 38312550 38312990 -164015357 + MLT1C LTR MaLR 11 467 0 359 377 40 11 chr4 38313146 38313321 -164015026 + MER5A DNA MER1_type 10 189 0 833 342 112 32 chr4 38314807 38315521 -164012826 + L2 LINE L2 1924 2694 -620 578 124 62 0 chr4 38315694 38315807 -164012540 - L1MA7 LINE L1 0 6291 6172 662 355 74 19 chr4 38315866 38316328 -164012019 + L2 LINE L2 2823 3309 -4 525 320 30 20 chr4 38317227 38317430 -164010917 - MIR SINE MIR -4 258 54 201 309 109 27 chr4 38317461 38317571 -164010776 + L3 LINE CR1 938 1056 -521 271 308 13 0 chr4 38317578 38317656 -164010691 - L2 LINE L2 0 3272 3194 419 350 38 66 chr4 38317732 38318187 -164010160 + L3 LINE CR1 1054 1551 -26 995 256 79 30 chr4 38318268 38318662 -164009685 - LTR40c LTR ERVL -52 413 1 247 231 0 0 chr4 38320049 38320101 -164008246 - MER116 DNA Mariner -26 54 3 313 339 42 18 chr4 38320144 38320312 -164008035 + MIR SINE MIR 91 262 0 551 327 143 0 chr4 38320903 38321120 -164007227 + MIR SINE MIR 15 262 0 291 355 138 11 chr4 38321492 38321681 -164006666 - MIR SINE MIR -19 243 31 2743 42 0 0 chr4 38322109 38322439 -164005908 - L1PA4 LINE L1 -3 6152 5823 212 367 62 23 chr4 38322439 38322567 -164005780 + MIR SINE MIR 119 251 -11 396 265 193 31 chr4 38322567 38322790 -164005557 - MER112 DNA MER1_type -1 259 1 191 267 35 81 chr4 38323819 38323905 -164004442 - MIR SINE MIR -71 191 110 1813 201 60 29 chr4 38325524 38325976 -164002371 + MLT1C LTR MaLR 2 467 0 271 244 74 104 chr4 38326860 38326995 -164001352 - MIR3 SINE MIR -36 172 42 298 301 32 0 chr4 38328137 38328230 -164000117 + (TTAGGG)n Simple_repeat Simple_repeat 1 96 0 1378 85 6 0 chr4 38328675 38328852 -163999495 + AluY SINE Alu 9 186 -125 806 272 101 13 chr4 38328852 38329150 -163999197 + L1MC4 LINE L1 7563 7886 -156 397 313 101 61 chr4 38330779 38330834 -163997513 + L3 LINE CR1 1214 1265 -312 2384 64 0 0 chr4 38330834 38331131 -163997216 + AluY SINE Alu 1 297 -14 397 313 101 61 chr4 38331131 38331269 -163997078 + L3 LINE CR1 1265 1396 -181 1805 145 25 0 chr4 38331269 38331552 -163996795 + AluSx SINE Alu 1 290 -22 397 313 101 61 chr4 38331552 38331702 -163996645 + L3 LINE CR1 1396 1572 -5 23 0 0 0 chr4 38332056 38332079 -163996268 + AT_rich Low_complexity Low_complexity 1 23 0 249 33 0 0 chr4 38332405 38332435 -163995912 + (GA)n Simple_repeat Simple_repeat 2 31 0 28 86 0 0 chr4 38333266 38333336 -163995011 + AT_rich Low_complexity Low_complexity 1 70 0 313 304 74 70 chr4 38333605 38333848 -163994499 + MIR SINE MIR 17 260 -2 2223 109 18 3 chr4 38334846 38335177 -163993170 - THE1C-int LTR MaLR -1244 336 1 1488 181 54 43 chr4 38335177 38335548 -163992799 - THE1C LTR MaLR 0 375 1 2531 251 67 106 chr4 38335883 38337500 -163990847 + L1MC3 LINE L1 1 1194 -4851 4892 158 10 5 chr4 38337538 38337712 -163990635 - L1PA15 LINE L1 -8 6808 6636 2265 114 0 0 chr4 38337712 38338020 -163990327 + AluY SINE Alu 1 308 -3 4892 158 10 5 chr4 38338020 38339589 -163988758 - L1PA15 LINE L1 -180 6636 5058 5299 234 41 41 chr4 38339590 38340670 -163987677 - L1PA15 LINE L1 -3015 3782 2703 2012 114 0 14 chr4 38340670 38340960 -163987387 - AluSc SINE Alu -22 287 2 5299 234 41 41 chr4 38340960 38342414 -163985933 - L1PA15 LINE L1 -4094 2703 1245 337 68 0 0 chr4 38342503 38342547 -163985800 + THE1B LTR MaLR 1 44 -320 1846 59 4 0 chr4 38342557 38342794 -163985553 + THE1B-int LTR MaLR 1343 1580 0 1844 148 60 23 chr4 38342794 38343145 -163985202 + THE1B LTR MaLR 1 364 0 335 268 49 106 chr4 38343175 38343317 -163985030 - L1PA15 LINE L1 -6135 652 519 785 115 0 0 chr4 38343318 38343431 -163984916 + THE1C LTR MaLR 262 374 -1 962 269 50 12 chr4 38343454 38343878 -163984469 + L1MC3 LINE L1 3458 3897 -2667 4214 167 63 11 chr4 38343894 38344227 -163984120 - L1MC1 LINE L1 -111 6222 5908 7856 138 11 11 chr4 38344227 38345527 -163982820 + HSMAR2 DNA Mariner 1 1300 -2 4214 167 63 11 chr4 38345527 38345991 -163982356 - L1MC1 LINE L1 -425 5908 5384 3607 195 37 16 chr4 38346040 38346911 -163981436 + L1MC3 LINE L1 5559 5819 -745 5149 201 56 66 chr4 38346911 38347145 -163981202 + L1MC3 LINE L1 6753 6988 -1215 283 109 0 0 chr4 38347145 38347191 -163981156 + MADE1 DNA Mariner 34 79 -1 5149 201 56 66 chr4 38347191 38348371 -163979976 + L1MC3 LINE L1 6988 8197 -6 411 98 0 0 chr4 38348401 38348462 -163979885 + (TG)n Simple_repeat Simple_repeat 2 62 0 213 108 0 0 chr4 38348910 38348947 -163979400 + (CA)n Simple_repeat Simple_repeat 1 37 0 199 383 133 6 chr4 38348948 38349128 -163979219 + L2 LINE L2 2954 3156 -116 279 54 0 0 chr4 38349617 38349654 -163978693 + (TTA)n Simple_repeat Simple_repeat 3 39 0 191 309 179 8 chr4 38350391 38350514 -163977833 - L2 LINE L2 -17 3255 3112 941 205 61 72 chr4 38350726 38351101 -163977246 + LTR37A LTR ERV1 56 426 0 2199 116 0 0 chr4 38351750 38352044 -163976303 + AluSx SINE Alu 2 295 -17 2124 112 0 0 chr4 38352665 38352952 -163975395 + AluSc SINE Alu 3 289 -20 360 0 0 0 chr4 38353057 38353097 -163975250 + (CA)n Simple_repeat Simple_repeat 2 41 0 2058 125 0 3 chr4 38354250 38354554 -163973793 - AluSx SINE Alu -9 303 1 384 94 0 0 chr4 38354646 38354699 -163973648 - Alu SINE Alu -249 53 1 267 31 0 0 chr4 38354732 38354764 -163973583 + (CA)n Simple_repeat Simple_repeat 2 33 0 281 333 51 51 chr4 38354943 38355159 -163973188 - MLT1K LTR MaLR 0 588 373 241 246 35 0 chr4 38355290 38355347 -163973000 - MLT1K LTR MaLR -383 205 147 221 245 0 0 chr4 38355589 38355638 -163972709 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 307 220 71 99 chr4 38355687 38355828 -163972519 + L1ME4a LINE L1 5983 6119 -2 361 318 9 0 chr4 38356022 38356132 -163972215 - MIR3 SINE MIR -3 205 95 207 0 0 0 chr4 38356144 38356167 -163972180 + (CAAAAA)n Simple_repeat Simple_repeat 4 26 0 710 131 29 29 chr4 38357729 38357904 -163970443 + GA-rich Low_complexity Low_complexity 2 176 0 297 178 30 50 chr4 38357937 38358038 -163970309 + GA-rich Low_complexity Low_complexity 2 100 0 328 239 114 80 chr4 38358378 38358554 -163969793 + MIR SINE MIR 81 262 0 927 293 87 14 chr4 38358615 38359028 -163969319 - LTR16C LTR ERVL -11 480 38 424 307 68 6 chr4 38359417 38359580 -163968767 + MIR SINE MIR 78 250 -12 197 261 77 54 chr4 38359704 38359834 -163968513 + MIR SINE MIR 21 153 -109 2161 182 11 0 chr4 38360456 38360814 -163967533 - MLT1A1 LTR MaLR -3 362 1 2502 116 16 8 chr4 38361148 38361520 -163966827 + THE1C LTR MaLR 1 375 0 1417 271 58 27 chr4 38361636 38362120 -163966227 + LTR53 LTR ERVL 21 519 0 978 211 81 29 chr4 38362959 38363267 -163965080 - MER33 DNA MER1_type 0 324 1 419 350 6 19 chr4 38363277 38363437 -163964910 + MIR SINE MIR 41 198 -64 1964 131 0 0 chr4 38363487 38363823 -163964524 + AluSx SINE Alu 1 336 0 211 182 0 0 chr4 38363909 38363942 -163964405 + polypyrimidine Low_complexity Low_complexity 2 34 0 404 265 44 0 chr4 38364185 38364321 -163964026 + MIR SINE MIR 82 223 -39 192 338 66 60 chr4 38364579 38364730 -163963617 - MIR3 SINE MIR -3 205 54 27 0 0 0 chr4 38365382 38365409 -163962938 + AT_rich Low_complexity Low_complexity 1 27 0 1157 278 86 14 chr4 38365983 38366685 -163961662 + L1MDa LINE L1 1045 1862 -4520 4069 240 22 19 chr4 38367343 38368902 -163959445 + L1PA15 LINE L1 1532 3124 -3673 3795 124 24 14 chr4 38368901 38369570 -163958777 + L1MA2 LINE L1 2358 3033 -4532 * 4893 113 55 22 chr4 38369558 38369625 -163958722 + L1MA2 LINE L1 6740 6803 -920 1794 199 0 0 chr4 38369625 38369936 -163958411 + AluJb SINE Alu 2 312 0 4893 113 55 22 chr4 38369936 38370720 -163957627 + L1MA2 LINE L1 6803 7619 -104 11183 215 30 6 chr4 38370731 38371487 -163956860 + L1PA15 LINE L1 3115 3851 -2965 297 0 0 0 chr4 38371487 38371520 -163956827 + (GA)n Simple_repeat Simple_repeat 2 34 0 11183 215 30 6 chr4 38371520 38374371 -163953976 + L1PA15 LINE L1 3851 6806 -10 25 31 0 0 chr4 38374573 38374605 -163953742 + AT_rich Low_complexity Low_complexity 1 32 0 5638 214 59 44 chr4 38374681 38375256 -163953091 + L1MB7 LINE L1 1897 2462 -3791 1828 127 7 27 chr4 38375256 38375556 -163952791 - AluSx SINE Alu -18 294 1 5638 214 59 44 chr4 38375556 38378968 -163949379 + L1MB7 LINE L1 2462 6125 -128 1715 36 27 32 chr4 38378972 38379192 -163949155 - AluY SINE Alu -15 296 78 582 53 0 0 chr4 38379192 38379267 -163949080 + Alu SINE Alu 2 76 -234 244 91 0 45 chr4 38379290 38379334 -163949013 + L1MB7 LINE L1 6195 6236 -17 2242 97 0 7 chr4 38379572 38379881 -163948466 - AluSq SINE Alu -6 307 1 22 0 0 0 chr4 38380075 38380097 -163948250 + AT_rich Low_complexity Low_complexity 1 22 0 1809 133 11 0 chr4 38381070 38381334 -163947013 + AluSx SINE Alu 36 302 -10 1886 157 0 26 chr4 38381613 38381925 -163946422 - AluSx SINE Alu -3 309 6 254 299 0 0 chr4 38384245 38384312 -163944035 + GA-rich Low_complexity Low_complexity 4 70 0 339 327 46 18 chr4 38385774 38385983 -163942364 - LTR33 LTR ERVL -1 520 300 500 237 22 15 chr4 38386091 38386226 -163942121 - LTR33 LTR ERVL -374 147 12 32 0 0 0 chr4 38386299 38386331 -163942016 + AT_rich Low_complexity Low_complexity 1 32 0 1490 189 7 11 chr4 38386527 38386802 -163941545 - AluJo SINE Alu -20 292 19 1903 168 85 15 chr4 38387125 38387525 -163940822 - MSTA LTR MaLR 0 428 1 271 216 39 0 chr4 38387647 38387698 -163940649 + L2 LINE L2 3211 3263 -9 747 184 73 17 chr4 38387770 38387949 -163940398 + MER5A DNA MER1_type 1 189 0 4465 199 49 3 chr4 38389644 38390505 -163937842 + MER54A LTR ERVL 1 900 -1 2822 13 0 0 chr4 38390812 38391125 -163937222 - AluYb8 SINE Alu -5 313 1 497 302 134 47 chr4 38391245 38391802 -163936545 - L2 LINE L2 -2 3311 2710 1979 117 33 3 chr4 38391910 38392210 -163936137 + AluSx SINE Alu 2 310 -2 184 240 40 0 chr4 38392592 38392642 -163935705 - L2 LINE L2 0 3313 3262 21 0 0 0 chr4 38392834 38392855 -163935492 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 38394042 38394072 -163934275 + AT_rich Low_complexity Low_complexity 1 30 0 326 349 96 0 chr4 38395065 38395211 -163933136 - MIR SINE MIR -92 170 11 30 45 0 0 chr4 38395322 38395366 -163932981 + AT_rich Low_complexity Low_complexity 1 44 0 24 85 0 0 chr4 38395510 38395569 -163932778 + AT_rich Low_complexity Low_complexity 1 59 0 835 224 0 0 chr4 38395581 38395742 -163932605 + FRAM SINE Alu 2 162 -14 823 228 70 109 chr4 38395851 38396337 -163932010 + MLT1C LTR MaLR 1 467 0 314 227 13 0 chr4 38396451 38396526 -163931821 - AluJ/FRAM SINE Alu 0 302 227 4526 200 37 8 chr4 38396528 38398345 -163930002 + L1PA16 LINE L1 4297 6165 -1 213 224 55 24 chr4 38398812 38398977 -163929370 + (TA)n Simple_repeat Simple_repeat 1 170 0 276 335 143 12 chr4 38401494 38401810 -163926537 - L2 LINE L2 -1468 1846 1429 1532 168 29 7 chr4 38402134 38402408 -163925939 + AluJb SINE Alu 1 280 -32 1337 19 0 6 chr4 38402408 38402569 -163925778 + (GAAA)n Simple_repeat Simple_repeat 1 160 0 268 295 120 21 chr4 38402582 38402816 -163925531 + L1ME3A LINE L1 4093 4349 -1797 743 227 40 45 chr4 38402860 38403058 -163925289 + MLT1A2 LTR MaLR 1 197 -177 268 295 76 9 chr4 38403240 38403345 -163925002 + MLT1L LTR MaLR 465 576 -39 1019 285 61 37 chr4 38403513 38403983 -163924364 - MLT1H LTR MaLR -16 533 11 272 348 70 32 chr4 38403991 38404422 -163923925 + L1ME3A LINE L1 5493 5939 -231 902 301 79 43 chr4 38405442 38406023 -163922324 - L2 LINE L2 0 3313 2717 742 331 71 10 chr4 38406816 38407127 -163921220 + MLT1J LTR MaLR 9 338 -173 216 398 29 10 chr4 38407545 38407648 -163920699 - L2 LINE L2 -47 3225 3121 302 376 101 16 chr4 38407916 38408044 -163920303 - L2 LINE L2 -444 2870 2754 2151 177 44 118 chr4 38408044 38408316 -163920031 - MER44D DNA MER2_type -1883 604 313 1883 140 0 0 chr4 38408316 38408587 -163919760 + AluSq SINE Alu 5 275 -38 2151 177 44 118 chr4 38408587 38408907 -163919440 - MER44D DNA MER2_type -2174 313 1 302 376 101 16 chr4 38408907 38409283 -163919064 - L2 LINE L2 -560 2754 2323 2068 194 41 2 chr4 38409495 38409907 -163918440 + MSTA LTR MaLR 1 428 0 1774 198 24 0 chr4 38410028 38410362 -163917985 - MER7A DNA MER2_type -5 341 2 214 360 166 32 chr4 38410465 38410904 -163917443 - L2 LINE L2 -2505 809 312 409 35 17 0 chr4 38412088 38412146 -163916201 - L1PA3 LINE L1 -250 5905 5847 26 50 0 0 chr4 38412816 38412856 -163915491 + AT_rich Low_complexity Low_complexity 1 40 0 23 54 0 0 chr4 38412975 38413012 -163915335 + AT_rich Low_complexity Low_complexity 1 37 0 183 213 21 21 chr4 38414625 38414672 -163913675 + L2 LINE L2 3264 3310 -3 788 254 75 26 chr4 38415312 38415540 -163912807 - MIR SINE MIR -16 246 8 282 329 62 19 chr4 38415570 38415731 -163912616 + L2 LINE L2 2921 3088 -184 311 261 0 0 chr4 38415899 38415964 -163912383 - MIR SINE MIR -143 119 55 425 274 60 0 chr4 38416002 38416119 -163912228 - MER45A DNA AcHobo -53 125 2 304 301 8 32 chr4 38416216 38416339 -163912008 - L1M4 LINE L1 -2310 3836 3717 581 315 65 65 chr4 38416364 38417062 -163911285 - L1M4 LINE L1 -2486 3660 2963 311 333 55 71 chr4 38417101 38417651 -163910696 - L1M4 LINE L1 -3329 2817 2277 621 293 26 8 chr4 38418232 38418498 -163909849 - HAL1b LINE L1 -703 645 375 180 0 0 0 chr4 38418981 38419001 -163909346 + (T)n Simple_repeat Simple_repeat 1 20 0 2213 99 3 0 chr4 38419033 38419325 -163909022 + AluSc SINE Alu 1 293 -16 2399 86 0 0 chr4 38419850 38420152 -163908195 - AluSx SINE Alu -10 302 1 804 222 144 4 chr4 38420191 38420559 -163907788 - MER31B LTR ERV1 0 466 1 21 36 0 0 chr4 38420777 38420805 -163907542 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr4 38420840 38420860 -163907487 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 8478 202 41 4 chr4 38420860 38423534 -163904813 - L1PA13 LINE L1 -9 6154 3382 435 302 79 0 chr4 38423536 38423725 -163904622 - L1ME3A LINE L1 -339 5831 5628 436 222 10 0 chr4 38423731 38423830 -163904517 - L1ME3A LINE L1 -586 5576 5477 506 274 86 94 chr4 38423845 38424611 -163903736 - L1ME3A LINE L1 -998 5148 4389 709 338 42 50 chr4 38424894 38425294 -163903053 - L3 LINE CR1 -61 1516 1120 3436 194 29 14 chr4 38428547 38429305 -163899042 - L1P LINE L1 -1515 4631 3863 6051 101 13 2 chr4 38429316 38430372 -163897975 + L1PA14 LINE L1 5099 6160 -1 2223 128 0 0 chr4 38431019 38431323 -163897024 - AluSx SINE Alu -5 307 4 513 254 48 79 chr4 38431779 38431968 -163896379 + FAM SINE Alu 1 47 -2 531 158 24 16 chr4 38431968 38432095 -163896252 + GA-rich Low_complexity Low_complexity 3 130 0 210 156 0 0 chr4 38432096 38432128 -163896219 + polypurine Low_complexity Low_complexity 1 32 0 232 371 8 23 chr4 38432128 38432260 -163896087 - L2 LINE L2 -1051 2263 2134 525 275 103 44 chr4 38432296 38432616 -163895731 - L2 LINE L2 -1277 2037 1699 5081 170 28 23 chr4 38432666 38434012 -163894335 + L1MA7 LINE L1 4915 6270 -21 22 0 0 0 chr4 38434022 38434044 -163894303 + AT_rich Low_complexity Low_complexity 1 22 0 272 353 37 15 chr4 38434119 38434255 -163894092 - MIR SINE MIR -123 139 1 1491 186 17 34 chr4 38434382 38434673 -163893674 - AluJo SINE Alu -26 286 1 305 314 59 8 chr4 38435976 38436094 -163892253 - MIR SINE MIR -105 157 34 983 187 7 100 chr4 38436351 38436421 -163891926 - L1 LINE L1 -1290 4856 4781 3915 135 54 26 chr4 38436421 38437140 -163891207 - L1PA16 LINE L1 -9 6157 5419 983 187 7 100 chr4 38437140 38437358 -163890989 - L1 LINE L1 -1365 4781 4595 799 271 151 11 chr4 38438636 38438986 -163889361 - Charlie7 DNA MER1_type -1215 1397 999 401 272 99 30 chr4 38439186 38439388 -163888959 - Charlie7 DNA MER1_type -1864 748 533 1866 100 85 0 chr4 38439404 38439674 -163888673 + AluSg SINE Alu 1 293 -17 186 43 0 0 chr4 38439680 38439703 -163888644 + (TAA)n Simple_repeat Simple_repeat 2 24 0 651 286 128 65 chr4 38439762 38440175 -163888172 - Charlie7 DNA MER1_type -2115 497 59 1779 77 0 20 chr4 38440869 38441116 -163887231 + AluY SINE Alu 1 242 -69 1527 112 5 0 chr4 38441284 38441489 -163886858 - AluSg1 SINE Alu -103 206 1 502 263 11 26 chr4 38441518 38441708 -163886639 - L1ME2 LINE L1 -19 6145 5959 2287 117 0 0 chr4 38443740 38444049 -163884298 - AluSx SINE Alu -3 309 1 462 253 98 9 chr4 38444597 38444955 -163883392 - L1ME LINE L1 -3756 2324 1970 278 291 101 42 chr4 38445289 38446047 -163882300 - L1ME LINE L1 -4607 1473 677 192 97 0 0 chr4 38446763 38446794 -163881553 + (TTTTTG)n Simple_repeat Simple_repeat 4 34 0 824 276 116 42 chr4 38446856 38447288 -163881059 - L2 LINE L2 0 3313 2850 28 0 0 0 chr4 38447333 38447361 -163880986 + AT_rich Low_complexity Low_complexity 1 28 0 255 281 149 25 chr4 38447430 38447551 -163880796 - L2 LINE L2 -584 2730 2595 401 267 105 0 chr4 38447556 38447661 -163880686 + MIR SINE MIR 9 124 -138 1072 274 82 22 chr4 38447669 38448229 -163880118 - L2 LINE L2 -927 2387 1719 1981 161 46 49 chr4 38448783 38449173 -163879174 - MLT1B LTR MaLR 0 390 2 5549 132 72 2 chr4 38449261 38450418 -163877929 - L1MA2 LINE L1 -1 6303 5068 1085 210 39 0 chr4 38450436 38450669 -163877678 - L1M1 LINE L1 -7306 259 18 193 293 71 43 chr4 38450737 38450810 -163877537 - MIR SINE MIR -2 260 191 285 51 0 0 chr4 38450810 38450849 -163877498 + (TG)n Simple_repeat Simple_repeat 2 40 0 193 293 71 43 chr4 38450849 38450915 -163877432 - MIR SINE MIR -71 191 117 28 29 0 0 chr4 38451029 38451064 -163877283 + AT_rich Low_complexity Low_complexity 1 35 0 1982 73 8 0 chr4 38451396 38451656 -163876691 + L1PA6 LINE L1 5893 6154 0 1014 273 32 23 chr4 38451663 38451971 -163876376 + MER87 LTR ERV1 231 541 0 231 88 0 0 chr4 38452373 38452407 -163875940 + (T)n Simple_repeat Simple_repeat 1 34 0 22 35 0 0 chr4 38454083 38454112 -163874235 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr4 38454412 38454442 -163873905 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr4 38455121 38455150 -163873197 + AT_rich Low_complexity Low_complexity 1 29 0 2241 192 19 2 chr4 38456656 38457067 -163871280 + MER47B DNA MER2_type 1 418 0 237 215 177 0 chr4 38457228 38457307 -163871040 + L2 LINE L2 3221 3313 0 324 230 70 20 chr4 38457586 38457686 -163870661 + L1MB4 LINE L1 6069 6173 -7 2429 146 49 7 chr4 38457924 38458335 -163870012 + MSTA LTR MaLR 1 428 0 244 275 82 126 chr4 38458974 38459181 -163869166 - MIR SINE MIR -64 198 1 406 292 101 29 chr4 38459383 38459592 -163868755 - MIR SINE MIR -31 231 8 33 56 0 0 chr4 38459833 38459887 -163868460 + AT_rich Low_complexity Low_complexity 1 54 0 2363 22 0 0 chr4 38459887 38460164 -163868183 - L1PA2 LINE L1 0 6155 5879 28 29 0 0 chr4 38460215 38460250 -163868097 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr4 38460281 38460316 -163868031 + AT_rich Low_complexity Low_complexity 1 35 0 209 45 0 91 chr4 38460845 38460889 -163867458 + (A)n Simple_repeat Simple_repeat 1 40 0 952 329 158 42 chr4 38463684 38465190 -163863157 + L2 LINE L2 814 2547 -767 3714 136 53 5 chr4 38465190 38465773 -163862574 + LTR9 LTR ERV1 1 611 -1 952 329 158 42 chr4 38465773 38465993 -163862354 + L2 LINE L2 2547 2740 -574 294 338 46 57 chr4 38466044 38466325 -163862022 + L2 LINE L2 2883 3160 -153 277 322 13 123 chr4 38466404 38466631 -163861716 - L2 LINE L2 -92 3180 2979 2344 108 0 0 chr4 38467125 38467430 -163860917 + AluSx SINE Alu 1 305 -7 186 403 0 13 chr4 38469047 38469124 -163859223 - L2 LINE L2 -86 3186 3111 230 325 135 28 chr4 38469700 38469989 -163858358 - L2 LINE L2 -445 2869 2550 1650 242 119 45 chr4 38471990 38472502 -163855845 + MLT2B3 LTR ERVL 1 550 -4 390 244 109 29 chr4 38472517 38472741 -163855606 - MER46C DNA MER2_type -57 281 5 227 191 0 0 chr4 38474135 38474182 -163854165 - L1 LINE L1 -1821 4325 4279 339 265 94 53 chr4 38474182 38474352 -163853995 + L3 LINE CR1 1369 1545 -32 747 310 26 9 chr4 38476068 38476297 -163852050 + MIR SINE MIR 24 256 -6 2306 225 84 37 chr4 38477271 38478110 -163850237 - L1ME2 LINE L1 -78 6086 5205 23 54 0 0 chr4 38478191 38478228 -163850119 + AT_rich Low_complexity Low_complexity 1 37 0 2975 171 19 4 chr4 38478233 38478796 -163849551 + L1P LINE L1 3226 3797 -2349 2167 121 48 3 chr4 38478796 38479147 -163849200 + L1PA13 LINE L1 5791 6161 -2 436 213 21 13 chr4 38479255 38479367 -163848980 - L1ME3A LINE L1 0 6164 6059 271 278 98 0 chr4 38479382 38479515 -163848832 - MIR SINE MIR -60 202 57 1020 175 69 41 chr4 38480452 38480561 -163847786 + MER33 DNA MER1_type 26 131 -2454 2102 119 3 3 chr4 38480561 38480864 -163847483 + AluSx SINE Alu 1 303 -9 1020 175 69 41 chr4 38480864 38481045 -163847302 + MER33 DNA MER1_type 131 324 0 2900 91 2 0 chr4 38481192 38481590 -163846757 + L1PA13 LINE L1 5746 6144 -19 356 301 71 0 chr4 38481733 38481856 -163846491 - MIR SINE MIR -64 144 50 1127 207 58 4 chr4 38481866 38482108 -163846239 - L1PA16 LINE L1 -13 6153 5899 1369 191 78 19 chr4 38482333 38482652 -163845695 + MER58B DNA MER1_type 1 338 -3 209 304 76 0 chr4 38482737 38482816 -163845531 - L2 LINE L2 0 3272 3188 387 280 54 38 chr4 38482977 38483163 -163845184 - MIR SINE MIR -37 225 37 233 336 34 17 chr4 38483597 38483716 -163844631 - MIR SINE MIR -98 164 44 322 183 33 0 chr4 38483968 38484028 -163844319 + L2 LINE L2 2241 2302 -1012 29 47 0 0 chr4 38484268 38484311 -163844036 + AT_rich Low_complexity Low_complexity 1 43 0 2019 146 7 3 chr4 38484317 38484626 -163843721 + AluSx SINE Alu 3 312 0 267 152 0 0 chr4 38486690 38486736 -163841611 + (CA)n Simple_repeat Simple_repeat 2 47 0 183 310 98 71 chr4 38487349 38487533 -163840814 - MIR3 SINE MIR 0 208 20 2160 246 105 38 chr4 38488007 38489043 -163839304 - L1ME2 LINE L1 -35 6129 4062 22 35 0 0 chr4 38489092 38489121 -163839226 + AT_rich Low_complexity Low_complexity 1 29 0 736 217 49 69 chr4 38489244 38489552 -163838795 - L1ME2 LINE L1 -2998 3148 2843 333 0 0 0 chr4 38489852 38489889 -163838458 + (CA)n Simple_repeat Simple_repeat 2 38 0 411 317 108 51 chr4 38491997 38492744 -163835603 + L2 LINE L2 1615 2404 -910 288 303 112 39 chr4 38493519 38493697 -163834650 + MIR SINE MIR 72 262 0 28 29 0 0 chr4 38494588 38494623 -163833724 + AT_rich Low_complexity Low_complexity 1 35 0 683 206 7 14 chr4 38494875 38495042 -163833305 - FRAM SINE Alu 0 169 4 233 356 0 23 chr4 38496188 38496275 -163832072 + L2 LINE L2 3229 3313 0 1131 58 7 2 chr4 38496566 38496730 -163831617 - L1PA5 LINE L1 -6 6149 5988 455 355 12 33 chr4 38496770 38497015 -163831332 - MIR SINE MIR -12 250 11 495 291 81 31 chr4 38497542 38497803 -163830544 + MER20B DNA MER1_type 318 591 -192 21 0 0 0 chr4 38497809 38497830 -163830517 + AT_rich Low_complexity Low_complexity 1 21 0 261 200 0 0 chr4 38497859 38497909 -163830438 + MER20B DNA MER1_type 702 751 -32 200 222 0 0 chr4 38497973 38498018 -163830329 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 288 306 83 9 chr4 38499477 38499585 -163828762 - L2 LINE L2 -2 3311 3196 1540 167 0 16 chr4 38500470 38500728 -163827619 - AluSx SINE Alu -22 290 37 29 0 0 0 chr4 38502322 38502351 -163825996 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 38503325 38503346 -163825001 + AT_rich Low_complexity Low_complexity 1 21 0 201 340 72 36 chr4 38503766 38503960 -163824387 - L2 LINE L2 -1227 2087 1887 29 28 0 0 chr4 38504444 38504480 -163823867 + AT_rich Low_complexity Low_complexity 1 36 0 926 145 44 0 chr4 38504606 38504765 -163823582 + MER2 DNA MER2_type 45 210 -135 339 226 0 0 chr4 38504807 38504869 -163823478 + MER2 DNA MER2_type 284 345 0 180 77 0 0 chr4 38505032 38505058 -163823289 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 193 371 103 4 chr4 38505641 38505894 -163822453 - L2 LINE L2 -1195 2119 1842 29 28 0 0 chr4 38506441 38506477 -163821870 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 38508074 38508095 -163820252 + AT_rich Low_complexity Low_complexity 1 21 0 761 269 53 5 chr4 38509271 38509479 -163818868 - MIR SINE MIR -13 249 32 24 67 0 0 chr4 38509608 38509653 -163818694 + AT_rich Low_complexity Low_complexity 1 45 0 23 68 0 0 chr4 38510916 38510960 -163817387 + AT_rich Low_complexity Low_complexity 1 44 0 4857 91 29 12 chr4 38514687 38515416 -163812931 + L1PA13 LINE L1 5423 6163 0 211 269 56 56 chr4 38516368 38516476 -163811871 + L2 LINE L2 2747 2854 -460 1610 167 11 7 chr4 38519504 38519779 -163808568 - AluJo SINE Alu -34 278 3 23 68 0 0 chr4 38520408 38520452 -163807895 + AT_rich Low_complexity Low_complexity 1 44 0 243 0 0 0 chr4 38521123 38521150 -163807197 + (CA)n Simple_repeat Simple_repeat 2 28 0 207 188 29 14 chr4 38522443 38522512 -163805835 + (CATATA)n Simple_repeat Simple_repeat 6 75 0 328 321 54 103 chr4 38523014 38523459 -163804888 + L2 LINE L2 2850 3272 0 242 287 114 60 chr4 38524053 38524220 -163804127 + L2 LINE L2 3118 3293 -20 470 253 27 103 chr4 38525947 38526114 -163802233 + MIR SINE MIR 9 161 -64 288 53 0 0 chr4 38526669 38526707 -163801640 + (CA)n Simple_repeat Simple_repeat 2 39 0 180 367 0 0 chr4 38526958 38527007 -163801340 + L2 LINE L2 3202 3250 -22 369 43 0 0 chr4 38528729 38528776 -163799571 + (TG)n Simple_repeat Simple_repeat 2 48 0 230 252 213 24 chr4 38529887 38530014 -163798333 + L2 LINE L2 3161 3311 -2 1409 146 32 8 chr4 38530399 38530645 -163797702 + Tigger2a DNA MER2_type 1 252 -182 3331 154 10 18 chr4 38530754 38531351 -163796996 + L1PA16 LINE L1 5570 6161 -5 1807 313 94 28 chr4 38531351 38532544 -163795803 + L2 LINE L2 2034 3313 0 2246 90 17 0 chr4 38536013 38536303 -163792044 + AluSx SINE Alu 1 295 -17 585 167 17 223 chr4 38537220 38537626 -163790721 + L1MC4 LINE L1 7729 8039 -3 388 291 89 20 chr4 38539484 38539687 -163788660 - MIR SINE MIR -30 232 16 774 304 87 27 chr4 38540783 38541197 -163787150 - L2 LINE L2 -1 3312 2874 755 87 0 24 chr4 38541297 38541424 -163786923 - AluY SINE Alu 0 311 188 218 276 69 11 chr4 38541427 38541514 -163786833 - L2 LINE L2 -508 2806 2715 310 182 182 13 chr4 38541546 38541623 -163786724 - FLAM_A SINE Alu -13 120 31 1937 150 0 0 chr4 38541649 38541922 -163786425 + AluSx SINE Alu 1 273 -39 576 210 19 6 chr4 38541922 38542079 -163786268 + GA-rich Low_complexity Low_complexity 1 159 0 181 244 12 81 chr4 38542295 38542381 -163785966 - L3 LINE CR1 -1072 505 426 24 0 0 0 chr4 38544587 38544611 -163783736 + AT_rich Low_complexity Low_complexity 1 24 0 492 48 0 0 chr4 38545383 38545446 -163782901 + (CA)n Simple_repeat Simple_repeat 2 64 0 243 0 0 0 chr4 38546044 38546071 -163782276 + (A)n Simple_repeat Simple_repeat 1 27 0 2444 47 0 0 chr4 38546077 38546376 -163781971 + AluY SINE Alu 1 299 -12 233 254 0 0 chr4 38546388 38546451 -163781896 + L1MC4 LINE L1 6646 6708 -1334 450 325 148 48 chr4 38547005 38547571 -163780776 - L2 LINE L2 -685 2629 2007 189 74 0 0 chr4 38548531 38548558 -163779789 + (TG)n Simple_repeat Simple_repeat 2 28 0 327 175 0 16 chr4 38550096 38550159 -163778188 - L2 LINE L2 -1 3271 3210 198 312 83 46 chr4 38551881 38551990 -163776357 - MIR SINE MIR -73 135 23 1913 104 10 21 chr4 38553972 38554261 -163774086 - AluSc SINE Alu -12 297 12 2074 88 10 17 chr4 38554778 38555072 -163773275 - AluSc SINE Alu -12 297 6 226 319 112 65 chr4 38555297 38555466 -163772881 - MER5B DNA MER1_type -1 177 1 843 126 8 0 chr4 38555554 38555673 -163772674 + FLAM_C SINE Alu 3 122 -21 210 379 52 0 chr4 38556055 38556171 -163772176 - L2 LINE L2 -21 3292 3171 405 265 45 30 chr4 38556329 38556425 -163771922 + MIR SINE MIR 108 208 -54 4145 40 0 0 chr4 38556425 38556929 -163771418 + L1PA4 LINE L1 5652 6155 0 405 265 45 30 chr4 38556929 38556964 -163771383 + MIR SINE MIR 208 241 -21 22 0 0 0 chr4 38556986 38557008 -163771339 + AT_rich Low_complexity Low_complexity 1 22 0 418 319 56 12 chr4 38557474 38557647 -163770700 + MIR SINE MIR 26 207 -55 263 276 11 11 chr4 38608637 38608724 -163719623 + MLT1K LTR MaLR 481 567 -21 273 315 54 0 chr4 38608745 38608837 -163719510 - L2 LINE L2 -10 3303 3207 279 247 56 0 chr4 38609998 38610087 -163718260 - Charlie1 DNA MER1_type -39 2722 2629 1992 156 0 0 chr4 38610090 38610379 -163717968 - AluSx SINE Alu -23 289 1 2030 119 0 28 chr4 38610640 38610960 -163717387 - AluSx SINE Alu -1 311 1 412 143 50 75 chr4 38612518 38612679 -163715668 + L1MC5 LINE L1 7547 7703 -258 1163 248 58 84 chr4 38613052 38613178 -163715169 - HAL1 LINE L1 -1 2506 2378 2314 222 86 3 chr4 38613178 38613745 -163714602 - MER90 LTR ERV1 0 614 1 1163 248 58 84 chr4 38613745 38613973 -163714374 - HAL1 LINE L1 -129 2378 2146 2450 73 0 13 chr4 38613973 38614288 -163714059 - AluY SINE Alu 0 311 1 1163 248 58 84 chr4 38614288 38614638 -163713709 - HAL1 LINE L1 -361 2146 1819 1237 94 0 85 chr4 38614776 38614977 -163713370 + AluSp SINE Alu 119 302 -11 218 103 35 35 chr4 38615193 38615251 -163713096 + CT-rich Low_complexity Low_complexity 3 60 0 413 344 106 9 chr4 38615266 38615484 -163712863 - MIR SINE MIR -1 261 23 325 252 171 0 chr4 38615567 38615678 -163712669 + MIR SINE MIR 91 220 -42 2103 134 6 10 chr4 38616051 38616364 -163711983 - AluSx SINE Alu 0 312 1 2925 185 28 3 chr4 38616627 38617226 -163711121 - L1MA8 LINE L1 -6 6285 5672 386 311 171 5 chr4 38617316 38617509 -163710838 - MIR SINE MIR -32 230 6 2173 119 0 0 chr4 38617723 38618050 -163710297 - AluSq SINE Alu 0 327 1 24 67 0 0 chr4 38618326 38618371 -163709976 + AT_rich Low_complexity Low_complexity 1 45 0 374 195 37 0 chr4 38618730 38618812 -163709535 - MER65A LTR ERV1 0 445 361 * 511 155 68 0 chr4 38618802 38618905 -163709442 + MER65A LTR ERV1 336 445 0 30 59 0 0 chr4 38619032 38619083 -163709264 + AT_rich Low_complexity Low_complexity 1 51 0 422 233 23 90 chr4 38619176 38619309 -163709038 - L2 LINE L2 0 3313 3190 26602 69 4 2 chr4 38619397 38622924 -163705423 + L1P LINE L1 547 4080 -2066 795 296 128 17 chr4 38623640 38623998 -163704349 + MLT1I LTR MaLR 3 400 -9 594 257 154 40 chr4 38623988 38624358 -163703989 + MLT1K LTR MaLR 167 578 -10 * 255 213 0 0 chr4 38626037 38626084 -163702263 - MLT1K LTR MaLR 0 588 542 315 344 200 0 chr4 38627422 38627652 -163700695 + L1MEd LINE L1 561 836 -5283 221 274 291 26 chr4 38628043 38628160 -163700187 - MIR SINE MIR -81 181 34 253 346 103 7 chr4 38628299 38628435 -163699912 - MIR SINE MIR -88 174 26 206 319 193 7 chr4 38628604 38628739 -163699608 + MIR SINE MIR 85 244 -18 395 217 121 19 chr4 38628743 38628950 -163699397 + MER113 DNA MER1_type? 69 296 -225 344 262 21 50 chr4 38629997 38630138 -163698209 + L1MC5 LINE L1 7646 7782 -179 365 233 167 0 chr4 38631072 38631192 -163697155 + MIR SINE MIR 110 249 -13 2302 116 0 0 chr4 38631512 38631822 -163696525 + AluSx SINE Alu 1 310 -2 295 297 171 9 chr4 38632216 38632327 -163696020 + MIR SINE MIR 1 129 -133 26 0 0 0 chr4 38632451 38632477 -163695870 + AT_rich Low_complexity Low_complexity 1 26 0 187 79 53 0 chr4 38632482 38632520 -163695827 + (TA)n Simple_repeat Simple_repeat 2 41 0 238 357 74 41 chr4 38632656 38632900 -163695447 - L2 LINE L2 -413 2901 2650 389 400 53 4 chr4 38633122 38633387 -163694960 + L2 LINE L2 2480 2757 -557 190 375 19 19 chr4 38634094 38634198 -163694149 + L2 LINE L2 3179 3282 -31 417 264 18 42 chr4 38634529 38634696 -163693651 + GA-rich Low_complexity Low_complexity 3 165 0 293 347 92 22 chr4 38636145 38636459 -163691888 + L2 LINE L2 2808 3143 -170 1036 292 102 43 chr4 38636507 38637088 -163691259 - L2 LINE L2 -3 3310 2695 3097 161 46 0 chr4 38637088 38637592 -163690755 - MER1A DNA MER1_type 0 527 1 1036 292 102 43 chr4 38637592 38637658 -163690689 - L2 LINE L2 -618 2695 2634 622 277 16 27 chr4 38638508 38638692 -163689655 - MIR3 SINE MIR -8 200 19 917 325 58 25 chr4 38638798 38639375 -163688972 + L1MCa LINE L1 24 597 -5826 2068 250 51 30 chr4 38639522 38640327 -163688020 + L1MCa LINE L1 885 1712 -4889 1707 158 30 0 chr4 38640407 38640711 -163687636 + L1MC3 LINE L1 7257 7569 -216 404 20 0 0 chr4 38640720 38640769 -163687578 - MADE1 DNA Mariner -4 76 28 895 207 0 0 chr4 38640792 38640971 -163687376 + L1MC3 LINE L1 7575 7753 -32 305 226 58 51 chr4 38640974 38641111 -163687236 - MER113 DNA MER1_type? -383 138 1 254 310 35 0 chr4 38641649 38641736 -163686611 + MER117 DNA MER1_type 3 92 -105 210 248 248 80 chr4 38642696 38642809 -163685538 - L2 LINE L2 0 3272 3141 696 157 25 0 chr4 38643655 38643776 -163684571 - MER65A LTR ERV1 0 445 322 2442 259 103 60 chr4 38643876 38644505 -163683842 - HAL1 LINE L1 -814 1693 1093 2423 77 0 0 chr4 38644505 38644804 -163683543 + AluY SINE Alu 1 299 -12 2442 259 103 60 chr4 38644804 38645701 -163682646 - HAL1 LINE L1 -1414 1093 100 25 31 0 0 chr4 38645839 38645871 -163682476 + AT_rich Low_complexity Low_complexity 1 32 0 370 214 86 17 chr4 38648837 38648954 -163679393 - L1MC5 LINE L1 -108 7853 7729 189 0 0 0 chr4 38649452 38649473 -163678874 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 552 307 95 22 chr4 38649979 38650210 -163678137 + L3 LINE CR1 1055 1302 -275 1714 157 0 62 chr4 38651197 38651521 -163676826 + AluJb SINE Alu 1 304 -8 198 0 0 0 chr4 38651555 38651577 -163676770 + (T)n Simple_repeat Simple_repeat 1 22 0 399 323 23 0 chr4 38651636 38651766 -163676581 - MIR SINE MIR -12 250 118 639 204 57 40 chr4 38652186 38652362 -163675985 + MER3 DNA MER1_type 1 179 -30 28 48 0 0 chr4 38652680 38652722 -163675625 + AT_rich Low_complexity Low_complexity 1 42 0 2093 75 0 0 chr4 38652742 38653007 -163675340 - AluY SINE Alu -12 299 35 220 325 8 79 chr4 38654045 38654144 -163674203 - L2 LINE L2 -8 3264 3174 1078 212 31 25 chr4 38654144 38654465 -163673882 + MER33 DNA MER1_type 1 323 -1 220 325 8 79 chr4 38654465 38654491 -163673856 - L2 LINE L2 -98 3174 3148 685 270 99 5 chr4 38654828 38655039 -163673308 - MIR SINE MIR -31 231 1 2696 39 0 0 chr4 38655409 38655720 -163672627 - AluY SINE Alu 0 311 1 650 289 111 40 chr4 38655735 38656105 -163672242 + L2 LINE L2 2918 3313 0 476 214 55 53 chr4 38656903 38657102 -163671245 - MER106B DNA MER1_type -36 1023 1 205 298 181 32 chr4 38657109 38657203 -163671144 + L2 LINE L2 3164 3271 -1 202 250 48 48 chr4 38658195 38658299 -163670048 + L3b LINE CR1 1298 1401 -182 38 22 0 0 chr4 38659291 38659336 -163669011 + AT_rich Low_complexity Low_complexity 1 45 0 29 0 0 0 chr4 38659835 38659864 -163668483 + AT_rich Low_complexity Low_complexity 1 29 0 341 317 34 53 chr4 38661205 38661413 -163666934 + HAL1b LINE L1 277 480 -868 332 284 67 32 chr4 38661818 38662025 -163666322 - L1MEd LINE L1 -5013 1106 862 2574 139 5 31 chr4 38662025 38662470 -163665877 - Tigger2a DNA MER2_type -1 433 1 332 284 67 32 chr4 38662470 38662547 -163665800 - L1MEd LINE L1 -5257 862 789 315 104 0 0 chr4 38663127 38663175 -163665172 + (TG)n Simple_repeat Simple_repeat 1 48 0 192 406 104 10 chr4 38663223 38663415 -163664932 + L2 LINE L2 2874 3083 -189 235 286 87 61 chr4 38664445 38664676 -163663671 - L1M1 LINE L1 -4621 2944 2708 325 317 18 35 chr4 38664739 38664966 -163663381 - L1MEd LINE L1 -4879 1240 1018 1827 137 31 53 chr4 38665071 38665392 -163662955 - THE1B LTR MaLR -49 315 2 637 266 13 25 chr4 38665392 38665550 -163662797 - MIR SINE MIR -103 159 4 288 323 50 0 chr4 38665802 38665901 -163662446 + L2 LINE L2 3202 3305 -8 225 266 64 53 chr4 38666600 38666694 -163661653 - LTR16A1 LTR ERVL -112 345 251 1736 153 29 77 chr4 38666830 38667209 -163661138 - MLT1B LTR MaLR 0 390 30 691 161 0 51 chr4 38667525 38667662 -163660685 - FLAM_C SINE Alu -3 130 1 471 395 43 0 chr4 38668377 38668610 -163659737 + L2 LINE L2 2560 2802 -512 404 263 23 0 chr4 38668656 38668789 -163659558 + Charlie4 DNA MER1_type 1820 1955 -6 1631 81 8 92 chr4 38668800 38669061 -163659286 + AluSq SINE Alu 1 239 -74 381 231 45 126 chr4 38669099 38669298 -163659049 + L2 LINE L2 3094 3276 -37 2136 109 13 0 chr4 38669511 38669815 -163658532 - L1PA16 LINE L1 -172 5994 5687 217 146 0 36 chr4 38669937 38669992 -163658355 + (GAAAA)n Simple_repeat Simple_repeat 3 55 0 186 43 0 0 chr4 38671108 38671131 -163657216 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 219 234 62 16 chr4 38671416 38671480 -163656867 + L2 LINE L2 3205 3271 -1 22 56 0 0 chr4 38671519 38671555 -163656792 + AT_rich Low_complexity Low_complexity 1 36 0 782 278 137 30 chr4 38672032 38672646 -163655701 - L2 LINE L2 -90 3223 2550 457 281 56 75 chr4 38674375 38674902 -163653445 + L2 LINE L2 2513 3149 -164 1877 155 0 7 chr4 38675208 38675511 -163652836 + AluJb SINE Alu 1 301 -11 2154 164 40 26 chr4 38676671 38677091 -163651256 + MSTB LTR MaLR 1 426 0 243 0 0 0 chr4 38678250 38678277 -163650070 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 1965 126 38 7 chr4 38678305 38678598 -163649749 + AluSx SINE Alu 1 302 -10 1958 173 50 27 chr4 38678663 38679103 -163649244 + L1MB2 LINE L1 5720 6169 -2 338 326 53 0 chr4 38679319 38679414 -163648933 + MIR SINE MIR 48 147 -61 741 297 5 0 chr4 38679802 38679997 -163648350 + MIR SINE MIR 56 251 -11 189 309 148 12 chr4 38680821 38680902 -163647445 - L2 LINE L2 -48 3224 3133 880 171 46 78 chr4 38681969 38682134 -163646213 - MER65A LTR ERV1 -235 210 52 2270 85 0 22 chr4 38682134 38682451 -163645896 - AluY SINE Alu -1 310 1 880 171 46 78 chr4 38682451 38682502 -163645845 - MER65A LTR ERV1 -393 52 1 2284 229 70 8 chr4 38682503 38683100 -163645247 - MER65A-int LTR ERV1 -1 4870 4237 1003 247 114 0 chr4 38683100 38683363 -163644984 - MER65A-int LTR ERV1 -739 4132 3840 344 203 0 0 chr4 38683427 38683486 -163644861 - MER31-int LTR ERV1 -525 4411 4353 886 153 94 20 chr4 38683563 38683766 -163644581 - MER31-int LTR ERV1 -1145 3791 3574 524 269 117 51 chr4 38684030 38684287 -163644060 - MER102a DNA MER1_type -1 329 56 359 314 10 10 chr4 38684596 38684698 -163643649 + L2 LINE L2 3169 3270 -43 884 269 106 51 chr4 38685198 38685790 -163642557 - MER65-int LTR ERV1 -2746 5374 4750 24 96 0 0 chr4 38685792 38685865 -163642482 + AT_rich Low_complexity Low_complexity 1 73 0 306 177 85 0 chr4 38685978 38686142 -163642205 + (TA)n Simple_repeat Simple_repeat 2 179 0 33 56 0 0 chr4 38686142 38686196 -163642151 + AT_rich Low_complexity Low_complexity 1 54 0 1109 180 60 88 chr4 38686224 38686703 -163641644 - MER65-int LTR ERV1 -2096 4235 3730 565 216 34 49 chr4 38686778 38686982 -163641365 - MER65-int LTR ERV1 -2861 3737 3537 5902 185 70 81 chr4 38687059 38688565 -163639782 - MER65-int LTR ERV1 -2378 2493 1763 267 103 0 0 chr4 38688565 38688604 -163639743 + (CA)n Simple_repeat Simple_repeat 2 40 0 5902 185 70 81 chr4 38688604 38689772 -163638575 - MER65-int LTR ERV1 -3108 1763 583 2167 96 0 3 chr4 38689772 38690075 -163638272 - AluY SINE Alu 0 304 3 4097 99 83 35 chr4 38690242 38691548 -163636799 + pTR5 LTR ERV1 743 2468 0 661 220 60 56 chr4 38691551 38691801 -163636546 - MER65-int LTR ERV1 -4560 311 61 2226 163 11 6 chr4 38692106 38692469 -163635878 - MLT1A1 LTR MaLR 0 365 1 359 336 73 39 chr4 38693097 38693329 -163635018 + MIR SINE MIR 20 259 -3 309 320 25 16 chr4 38693453 38693575 -163634772 + MIR3 SINE MIR 85 207 -1 1837 199 3 3 chr4 38694038 38694374 -163633973 - MER7A DNA MER2_type 0 346 13 29 28 0 0 chr4 38694386 38694422 -163633925 + AT_rich Low_complexity Low_complexity 1 36 0 6386 126 9 26 chr4 38694428 38695545 -163632802 - L1PB1 LINE L1 0 6151 5069 2000 152 3 0 chr4 38695545 38695842 -163632505 - AluSx SINE Alu -12 300 3 6386 126 9 26 chr4 38695842 38696139 -163632208 - L1PB1 LINE L1 -1082 5069 4768 234 313 61 10 chr4 38696711 38696810 -163631537 - MIR SINE MIR -6 256 153 413 281 118 0 chr4 38696908 38697043 -163631304 + MIR SINE MIR 34 184 -78 26 30 0 0 chr4 38697079 38697112 -163631235 + AT_rich Low_complexity Low_complexity 1 33 0 932 252 51 13 chr4 38697519 38697753 -163630594 - MIR SINE MIR 0 262 20 651 281 41 21 chr4 38698644 38698886 -163629461 + MIR SINE MIR 3 249 -13 2215 105 3 0 chr4 38698993 38699288 -163629059 + AluSp SINE Alu 1 296 -17 24 0 0 0 chr4 38699454 38699478 -163628869 + AT_rich Low_complexity Low_complexity 1 24 0 249 139 0 0 chr4 38699758 38699801 -163628546 + (GA)n Simple_repeat Simple_repeat 2 44 0 1080 231 87 73 chr4 38700347 38701263 -163627084 + L1ME2 LINE L1 5122 6087 -77 297 268 12 0 chr4 38701303 38701385 -163626962 + (TA)n Simple_repeat Simple_repeat 1 83 0 404 253 105 11 chr4 38701411 38701601 -163626746 + L1ME3A LINE L1 5743 5950 -220 191 265 41 0 chr4 38701823 38701872 -163626475 - MIR SINE MIR -15 247 197 198 0 0 0 chr4 38701879 38701901 -163626446 + (TG)n Simple_repeat Simple_repeat 2 23 0 3634 138 160 6 chr4 38701916 38702963 -163625384 + Tigger3(Golem) DNA MER2_type 21 3025 -4 495 259 38 25 chr4 38703004 38703162 -163625185 - MIR SINE MIR -95 167 8 213 297 161 0 chr4 38703525 38703643 -163624704 - MIR SINE MIR -72 190 54 326 286 48 42 chr4 38703770 38703959 -163624388 + MIR SINE MIR 73 262 0 27 81 0 0 chr4 38704072 38704134 -163624213 + AT_rich Low_complexity Low_complexity 1 62 0 987 225 87 58 chr4 38705196 38705369 -163622978 + MLT1B LTR MaLR 1 168 -260 189 0 0 0 chr4 38705369 38705390 -163622957 + (TC)n Simple_repeat Simple_repeat 1 21 0 987 225 87 58 chr4 38705390 38705587 -163622760 + MLT1B LTR MaLR 168 428 0 22 0 0 0 chr4 38705699 38705721 -163622626 + AT_rich Low_complexity Low_complexity 1 22 0 294 29 0 0 chr4 38705867 38705902 -163622445 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 23 92 0 0 chr4 38706347 38706412 -163621935 + AT_rich Low_complexity Low_complexity 1 65 0 1838 170 140 45 chr4 38707943 38708414 -163619933 + MER34 LTR ERV1 27 542 0 318 279 147 7 chr4 38708750 38708886 -163619461 + MIR SINE MIR 13 167 -95 264 330 36 36 chr4 38709003 38709115 -163619232 - L2 LINE L2 -22 3291 3180 257 356 76 8 chr4 38709779 38709897 -163618450 - L2 LINE L2 -9 3263 3138 1252 226 50 47 chr4 38711494 38711959 -163616388 - LTR37B LTR ERV1 -2 466 1 276 210 284 0 chr4 38712251 38712332 -163616015 + L1ME3A LINE L1 6059 6162 -8 2118 106 7 13 chr4 38712704 38713032 -163615315 + AluSx SINE Alu 1 312 0 1273 249 21 42 chr4 38713477 38713859 -163614488 + MLT1A2 LTR MaLR 1 374 0 280 275 188 31 chr4 38713859 38714019 -163614328 + L2 LINE L2 2553 2737 -577 470 302 84 19 chr4 38715206 38715421 -163612926 + MIR SINE MIR 24 252 -10 204 40 0 0 chr4 38716382 38716407 -163611940 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr4 38717343 38717366 -163610981 + GC_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr4 38717513 38717552 -163610795 + GC_rich Low_complexity Low_complexity 1 39 0 1855 136 10 10 chr4 38718150 38718444 -163609903 - AluSx SINE Alu -14 298 5 21 0 0 0 chr4 38718451 38718472 -163609875 + AT_rich Low_complexity Low_complexity 1 21 0 1963 135 0 22 chr4 38718987 38719298 -163609049 - AluSx SINE Alu -8 304 1 821 238 182 25 chr4 38719962 38720248 -163608099 + HsTC2 DNA Tc2 6 336 -1562 267 156 26 52 chr4 38720235 38720312 -163608035 + HsTC2 DNA Tc2 1709 1783 -115 * 33 0 0 0 chr4 38720313 38720346 -163608001 + AT_rich Low_complexity Low_complexity 1 33 0 4901 148 23 31 chr4 38720448 38721407 -163606940 + L1PA16 LINE L1 5214 6165 -1 331 266 146 82 chr4 38721890 38722088 -163606259 + MER102b DNA MER1_type 1 228 -1200 2044 121 7 17 chr4 38722088 38722385 -163605962 + AluSx SINE Alu 1 294 -18 331 266 146 82 chr4 38722385 38722502 -163605845 + MER102b DNA MER1_type 228 336 -5 325 281 17 34 chr4 38722869 38723047 -163605300 + (TA)n Simple_repeat Simple_repeat 2 176 0 331 331 75 50 chr4 38723582 38723913 -163604434 - L2 LINE L2 -212 3060 2726 25 65 0 0 chr4 38726314 38726360 -163601987 + AT_rich Low_complexity Low_complexity 1 46 0 228 35 0 0 chr4 38726388 38726417 -163601930 + (CA)n Simple_repeat Simple_repeat 2 30 0 2286 91 10 10 chr4 38726427 38726734 -163601613 - AluSc SINE Alu -2 307 1 579 287 106 21 chr4 38726841 38727029 -163601318 - MIR SINE MIR -11 251 48 384 242 0 11 chr4 38728029 38728120 -163600227 - MER103 DNA DNA -75 91 2 198 289 52 62 chr4 38728761 38728858 -163599489 - MIR SINE MIR 0 262 167 21 36 0 0 chr4 38728868 38728896 -163599451 + AT_rich Low_complexity Low_complexity 1 28 0 1634 182 3 35 chr4 38728920 38729238 -163599109 - AluJo SINE Alu -4 308 1 310 273 20 40 chr4 38729241 38729340 -163599007 - MIR SINE MIR -115 147 51 235 227 196 0 chr4 38729402 38729499 -163598848 - MLT1J LTR MaLR -18 493 378 1388 202 47 16 chr4 38729527 38729844 -163598503 + MLT1A1 LTR MaLR 26 352 -13 325 337 0 0 chr4 38729850 38730025 -163598322 + (CAGC)n Simple_repeat Simple_repeat 2 176 0 224 359 6 0 chr4 38730101 38730268 -163598079 + (CAGC)n Simple_repeat Simple_repeat 2 169 0 749 312 52 55 chr4 38730270 38730566 -163597781 - MLT1J LTR MaLR -185 326 30 487 57 57 0 chr4 38730566 38730654 -163597693 + (TA)n Simple_repeat Simple_repeat 1 93 0 749 312 52 55 chr4 38730654 38730684 -163597663 - MLT1J LTR MaLR -481 30 1 1107 116 32 21 chr4 38731004 38731193 -163597154 + L1PA10 LINE L1 5978 6168 0 2264 118 0 9 chr4 38732550 38732865 -163595482 + AluSx SINE Alu 1 312 0 1157 259 56 38 chr4 38733484 38734031 -163594316 - MLT2E LTR ERVL 0 628 25 221 252 189 27 chr4 38734082 38734193 -163594154 + MIR SINE MIR 131 259 -3 748 320 20 70 chr4 38734275 38734763 -163593584 + LTR16B LTR ERVL 1 464 0 396 114 11 34 chr4 38735662 38735750 -163592597 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 23 0 0 0 chr4 38736068 38736091 -163592256 + AT_rich Low_complexity Low_complexity 1 23 0 795 228 0 6 chr4 38736167 38736334 -163592013 + FRAM SINE Alu 1 166 0 288 244 24 37 chr4 38736527 38736609 -163591738 + MIR3 SINE MIR 119 199 -9 190 197 0 171 chr4 38737408 38737484 -163590863 + L2 LINE L2 3246 3308 -5 228 35 0 0 chr4 38737797 38737826 -163590521 + (A)n Simple_repeat Simple_repeat 1 29 0 1605 162 54 0 chr4 38740727 38741005 -163587342 + AluSx SINE Alu 1 293 -19 742 121 0 10 chr4 38742341 38742601 -163585746 + AluSx SINE Alu 1 354 0 21 36 0 0 chr4 38743145 38743173 -163585174 + AT_rich Low_complexity Low_complexity 1 28 0 241 179 60 37 chr4 38743465 38743599 -163584748 + (TA)n Simple_repeat Simple_repeat 2 138 0 226 306 187 15 chr4 38744546 38744680 -163583667 + MER5A DNA MER1_type 33 189 0 2203 110 13 10 chr4 38744690 38745000 -163583347 - AluSx SINE Alu 0 312 2 1544 201 0 20 chr4 38745574 38745868 -163582479 - AluJo SINE Alu -24 288 1 3066 143 12 4 chr4 38746711 38747199 -163581148 - LTR38 LTR ERV1 -64 492 1 1971 225 166 0 chr4 38748197 38748779 -163579568 - L1MD3 LINE L1 -2 7993 5676 198 118 0 0 chr4 38752982 38753016 -163575331 + (TG)n Simple_repeat Simple_repeat 2 35 0 1694 117 3 65 chr4 38753135 38753426 -163574921 + AluSc SINE Alu 1 273 -36 216 0 0 0 chr4 38753426 38753450 -163574897 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 510 286 74 11 chr4 38753450 38753625 -163574722 + MER5A DNA MER1_type 3 188 -1 3872 121 11 28 chr4 38754546 38755165 -163573182 - MER4B LTR ERV1 0 610 2 281 281 10 21 chr4 38756065 38756161 -163572186 - L1ME4a LINE L1 -63 6058 5964 272 313 16 39 chr4 38756418 38756600 -163571747 + (CA)n Simple_repeat Simple_repeat 2 179 0 213 261 15 0 chr4 38756694 38756759 -163571588 + (CA)n Simple_repeat Simple_repeat 1 66 0 494 305 117 14 chr4 38757099 38757381 -163570966 + LTR33 LTR ERVL 210 520 -1 571 229 40 49 chr4 38757533 38757756 -163570591 - L1ME4a LINE L1 -195 5975 5755 243 0 0 0 chr4 38758177 38758204 -163570143 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 1664 177 0 7 chr4 38758204 38758475 -163569872 - AluJb SINE Alu -25 287 19 225 266 11 53 chr4 38758678 38758772 -163569575 - MER20B DNA MER1_type -629 154 65 206 298 70 76 chr4 38759287 38759445 -163568902 + L2 LINE L2 3130 3286 -27 437 351 26 7 chr4 38759711 38759862 -163568485 + L2 LINE L2 3115 3268 -4 3002 186 70 5 chr4 38759988 38760602 -163567745 + LTR65 LTR ERV1 8 661 -8 455 255 152 7 chr4 38760632 38760777 -163567570 - MER5B DNA MER1_type 0 178 13 426 329 136 5 chr4 38762510 38762723 -163565624 + MLT1I LTR MaLR 79 319 -90 275 271 147 0 chr4 38763029 38763158 -163565189 - MIR SINE MIR -13 249 102 186 143 0 0 chr4 38763206 38763241 -163565106 - L2 LINE L2 -4 3309 3275 267 288 100 38 chr4 38763454 38763614 -163564733 + MLT1E LTR MaLR 157 326 -298 630 180 0 47 chr4 38763635 38763763 -163564584 - FLAM_C SINE Alu -17 126 5 1002 280 29 13 chr4 38763775 38764086 -163564261 + MLT1E LTR MaLR 277 592 -1 231 36 0 0 chr4 38765346 38765374 -163562973 + (GCTTG)n Simple_repeat Simple_repeat 5 32 0 1592 121 136 11 chr4 38765466 38765621 -163562726 - AluSg SINE Alu -13 297 163 243 88 0 0 chr4 38765621 38765655 -163562692 + (TG)n Simple_repeat Simple_repeat 1 34 0 1592 121 136 11 chr4 38765655 38765763 -163562584 - AluSg SINE Alu -147 163 1 240 305 35 85 chr4 38765901 38766042 -163562305 + MIR3 SINE MIR 21 154 -54 672 237 87 0 chr4 38766441 38766614 -163561733 - MER5A DNA MER1_type 0 189 2 751 229 123 20 chr4 38766660 38766913 -163561434 + Charlie4a DNA MER1_type 21 299 -209 9550 42 6 1 chr4 38767026 38768982 -163559365 + L1PA5 LINE L1 4190 6152 -2 202 319 96 11 chr4 38769703 38769797 -163558550 + L2 LINE L2 2887 2988 -284 408 299 120 22 chr4 38770984 38771168 -163557179 - MIR SINE MIR -46 216 15 955 213 30 61 chr4 38771306 38771569 -163556778 + MLT1E2 LTR MaLR 1 255 -371 448 213 96 0 chr4 38771603 38771697 -163556650 - MER63 DNA MER1_type -333 729 1 188 309 18 0 chr4 38771723 38771778 -163556569 - MIR SINE MIR -118 144 89 516 279 79 57 chr4 38772375 38772640 -163555707 - LTR33 LTR ERVL -234 287 17 200 214 54 36 chr4 38774252 38774308 -163554039 + MIR SINE MIR 96 152 -56 436 238 222 26 chr4 38774463 38774652 -163553695 + LTR50 LTR ERVL 65 290 -505 1294 177 111 58 chr4 38774760 38775122 -163553225 - MLT1B LTR MaLR 0 390 10 505 310 141 11 chr4 38775107 38775455 -163552892 + LTR50 LTR ERVL 394 786 -9 * 1767 298 114 46 chr4 38775467 38776415 -163551932 - L2 LINE L2 -316 2997 1991 1215 119 4 123 chr4 38776436 38776713 -163551634 + Tigger4(Zombi) DNA MER2_type 2488 2731 0 534 243 22 132 chr4 38777002 38777274 -163551073 - MIR SINE MIR -3 259 18 284 279 96 29 chr4 38778309 38778413 -163549934 - L2 LINE L2 -2 3270 3160 355 340 9 56 chr4 38778413 38778645 -163549702 - MIR SINE MIR -13 249 29 596 274 178 8 chr4 38779209 38779519 -163548828 + MLT2E LTR ERVL 15 422 -206 242 238 16 0 chr4 38779570 38779633 -163548714 + MLT2E LTR ERVL 533 596 -32 22 35 0 0 chr4 38780137 38780166 -163548181 + AT_rich Low_complexity Low_complexity 1 29 0 2497 187 29 13 chr4 38780405 38781020 -163547327 - L1MC3 LINE L1 -1 7784 7160 1682 175 19 0 chr4 38781021 38781329 -163547018 - MLT1C LTR MaLR -1 466 153 240 211 40 23 chr4 38781723 38781898 -163546449 + (TA)n Simple_repeat Simple_repeat 1 178 0 2110 143 14 6 chr4 38782845 38783196 -163545151 - MLT1A1 LTR MaLR -8 357 4 347 253 212 54 chr4 38785829 38786070 -163542277 + L2 LINE L2 3033 3311 -2 340 264 0 22 chr4 38786206 38786297 -163542050 + L2 LINE L2 3215 3303 -10 190 326 37 74 chr4 38786723 38786858 -163541489 - L2 LINE L2 -211 3061 2932 7398 174 129 42 chr4 38786878 38788076 -163540271 - L1MCa LINE L1 -4250 2176 1084 1840 166 41 12 chr4 38788076 38788420 -163539927 - L1PA15 LINE L1 -1 6164 5811 7398 174 129 42 chr4 38788420 38788884 -163539463 - L1MCa LINE L1 -5342 1084 662 2215 110 72 20 chr4 38788884 38789229 -163539118 + THE1B LTR MaLR 1 363 -1 7398 174 129 42 chr4 38789229 38789559 -163538788 - L1MCa LINE L1 -5764 662 9 205 110 98 24 chr4 38790147 38790229 -163538118 + (AATAG)n Simple_repeat Simple_repeat 3 90 0 231 324 90 32 chr4 38790555 38790833 -163537514 - MER102a DNA MER1_type 0 330 37 645 148 90 0 chr4 38791063 38791185 -163537162 - Tigger1 DNA MER2_type -290 2128 1996 1063 153 0 16 chr4 38791190 38791379 -163536968 - L1PB1 LINE L1 0 6151 5966 2270 108 3 0 chr4 38791381 38791677 -163536670 - AluSg SINE Alu -11 299 3 1267 195 28 7 chr4 38791760 38792047 -163536300 - L1MB1 LINE L1 -1 6167 5875 221 303 182 30 chr4 38792785 38792917 -163535430 - MER5B DNA MER1_type -1 177 37 21 36 0 0 chr4 38793129 38793157 -163535190 + AT_rich Low_complexity Low_complexity 1 28 0 677 280 12 64 chr4 38796814 38797157 -163531190 + MER46C DNA MER2_type 6 330 -8 23 0 10 0 chr4 38797773 38797841 -163530506 + AT_rich Low_complexity Low_complexity 1 23 0 8097 85 2 32 chr4 38798018 38799254 -163529093 - HERV17 LTR ERV1 -1950 6676 5479 3916 241 39 21 chr4 38799512 38800698 -163527649 - L1M2 LINE L1 -4737 2472 1238 2084 139 34 42 chr4 38801341 38801910 -163526437 - L1P4 LINE L1 -486 5679 5121 180 0 0 0 chr4 38801910 38801930 -163526417 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2084 139 34 42 chr4 38801930 38802189 -163526158 - L1P4 LINE L1 -1044 5121 4861 283 156 69 107 chr4 38802197 38802359 -163525988 - AluSg/x SINE Alu -16 284 147 1329 300 19 16 chr4 38802958 38803565 -163524782 - ERVL LTR ERVL -4892 872 192 2059 102 0 0 chr4 38803565 38803839 -163524508 + AluSc SINE Alu 1 274 -35 3639 227 26 20 chr4 38804275 38805361 -163522986 + L1P LINE L1 2439 3530 -2616 808 189 61 0 chr4 38806427 38806591 -163521756 + MLT-int LTR MaLR 259 432 -1303 1647 115 70 0 chr4 38806592 38806836 -163521511 - AluSx SINE Alu -9 303 43 355 275 69 8 chr4 38806939 38807070 -163521277 + MIR SINE MIR 123 261 -1 231 377 66 9 chr4 38807257 38807469 -163520878 - HAL1 LINE L1 -1895 612 389 3881 142 10 3 chr4 38808381 38809056 -163519291 - Tigger1 DNA MER2_type -368 2050 1371 339 332 35 40 chr4 38809066 38809412 -163518935 + L1PA12 LINE L1 7 350 -7231 7284 73 6 6 chr4 38810143 38811146 -163517201 - HERV17 LTR ERV1 -3275 5351 4349 1498 74 0 52 chr4 38811144 38811375 -163516972 + HERV17 LTR ERV1 466 684 -7942 * 520 177 27 7 chr4 38811544 38811691 -163516656 + GA-rich Low_complexity Low_complexity 2 151 0 302 230 11 0 chr4 38812135 38812225 -163516122 - MLT1J2 LTR MaLR -308 142 70 7012 60 7 0 chr4 38812668 38813709 -163514638 - L1PA6 LINE L1 -6 6148 5105 3355 171 13 10 chr4 38814546 38815149 -163513198 - MER6A DNA MER2_type 0 605 1 26 30 0 0 chr4 38815300 38815333 -163513014 + AT_rich Low_complexity Low_complexity 1 33 0 705 244 34 30 chr4 38815986 38816220 -163512127 + MLT1B LTR MaLR 3 237 -153 13530 92 14 5 chr4 38816325 38818042 -163510305 - L1P LINE L1 -2098 4048 2309 180 0 0 0 chr4 38818042 38818062 -163510285 + (TG)n Simple_repeat Simple_repeat 1 20 0 13530 92 14 5 chr4 38818062 38818399 -163509948 - L1P LINE L1 -3837 2309 1976 6090 206 16 17 chr4 38818699 38820202 -163508145 + L1P LINE L1 3387 4888 -1258 1792 142 25 11 chr4 38820202 38820476 -163507871 + AluSc SINE Alu 1 278 -31 467 287 40 23 chr4 38821092 38821266 -163507081 - MIR SINE MIR -20 242 66 2570 147 50 59 chr4 38821342 38821939 -163506408 - LTR9 LTR ERV1 -11 601 10 217 244 22 56 chr4 38822171 38822261 -163506086 + MIR SINE MIR 71 157 -105 285 289 94 0 chr4 38822264 38822392 -163505955 - MIR SINE MIR 0 262 123 239 202 36 80 chr4 38822410 38822558 -163505789 - MLT1H LTR MaLR -16 533 444 * 448 244 74 74 chr4 38822545 38822787 -163505560 - MLT1H LTR MaLR -226 323 82 760 198 17 59 chr4 38823424 38823661 -163504686 + Charlie5 DNA MER1_type 2398 2624 0 221 57 29 0 chr4 38824600 38824635 -163503712 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 532 113 0 21 chr4 38825116 38825213 -163503134 + L1P4 LINE L1 5378 5472 -693 2541 203 42 12 chr4 38825844 38826553 -163501794 + L1MB2 LINE L1 5174 5906 -265 2166 174 34 0 chr4 38826553 38826962 -163501385 - Tigger1 DNA MER2_type 0 2418 1996 472 129 0 21 chr4 38826969 38827062 -163501285 - L1PB1 LINE L1 0 6151 6061 1878 183 85 23 chr4 38827446 38827844 -163500503 + MSTB1 LTR MaLR 1 423 -9 5061 97 7 7 chr4 38827942 38828673 -163499674 + L1PB1 LINE L1 5420 6150 -1 407 137 14 0 chr4 38830263 38830336 -163498011 + CT-rich Low_complexity Low_complexity 4 77 0 254 309 36 18 chr4 38831249 38831359 -163496988 + LTR67 LTR ERVL 332 443 -114 415 333 26 6 chr4 38833085 38833241 -163495106 + MIR SINE MIR 2 160 -102 2237 92 0 0 chr4 38834618 38834932 -163493415 + AluY SINE Alu 1 311 0 850 182 0 0 chr4 38835229 38835377 -163492970 - MSTC LTR MaLR 0 428 281 1849 89 57 14 chr4 38835378 38835658 -163492689 - AluY SINE Alu -2 309 18 1607 174 0 10 chr4 38835795 38836083 -163492264 - AluSg SINE Alu -25 285 1 14599 193 23 5 chr4 38836083 38841441 -163486906 - L1PB1 LINE L1 -178 6689 1093 3383 248 62 8 chr4 38841444 38842432 -163485915 - L1PB1 LINE L1 -5817 1046 6 9707 135 74 91 chr4 38842441 38843272 -163485075 - Tigger1 DNA MER2_type -408 2010 1167 713 173 24 16 chr4 38843272 38843399 -163484948 + FLAM_A SINE Alu 1 128 -14 9707 135 74 91 chr4 38843399 38844483 -163483864 - Tigger1 DNA MER2_type -1251 1167 2 1203 206 8 11 chr4 38844484 38844751 -163483596 + L1MB2 LINE L1 5905 6170 -1 1354 260 26 55 chr4 38846806 38847387 -163480960 + L1M3b LINE L1 8 553 -5728 387 299 145 58 chr4 38848431 38848672 -163479675 - MIR SINE MIR 0 262 1 1686 228 5 27 chr4 38848891 38849264 -163479083 - MLT1A1 LTR MaLR 0 365 1 4757 74 36 3 chr4 38849329 38849967 -163478380 - PABL_A LTR ERV1 0 660 2 401 251 34 56 chr4 38850536 38850715 -163477632 + MER104 DNA Tc2 2 176 -4 875 330 108 5 chr4 38851035 38851444 -163476903 + LTR16C LTR ERVL 1 451 -40 474 296 117 10 chr4 38851947 38852143 -163476204 + MER68 LTR ERV1 346 562 0 437 154 26 0 chr4 38852791 38852869 -163475478 - MADE1 DNA Mariner 0 80 1 651 178 35 98 chr4 38853317 38853490 -163474857 + MER44D DNA MER2_type 1 432 -177 610 152 0 10 chr4 38853490 38853589 -163474758 + MER4A LTR ERV1 1 98 -566 1682 127 8 96 chr4 38853589 38853978 -163474369 + MER4A LTR ERV1 261 664 0 1015 175 11 0 chr4 38853979 38854156 -163474191 + MER44D DNA MER2_type 526 704 -1 248 409 43 0 chr4 38854683 38854798 -163473549 + L2 LINE L2 3144 3263 -9 32 57 0 0 chr4 38854846 38854899 -163473448 + AT_rich Low_complexity Low_complexity 1 53 0 1015 184 86 17 chr4 38855655 38855888 -163472459 - L1MB1 LINE L1 -5 6184 5936 * 8869 200 17 59 chr4 38855886 38856067 -163472280 + L1P LINE L1 3004 3191 -2955 2414 67 0 10 chr4 38856067 38856367 -163471980 + AluY SINE Alu 1 297 -14 8869 200 17 59 chr4 38856367 38858611 -163469736 + L1P LINE L1 3191 5327 -819 2419 53 0 17 chr4 38858616 38858915 -163469432 + AluY SINE Alu 2 295 -16 565 96 10 10 chr4 38860384 38860488 -163467859 + (TAGA)n Simple_repeat Simple_repeat 4 107 0 331 125 0 18 chr4 38860922 38860978 -163467369 - MLT2A2 LTR ERVL 0 453 399 310 323 0 0 chr4 38861000 38861093 -163467254 - L1MC4 LINE L1 -1336 6706 6614 307 309 18 9 chr4 38861068 38861178 -163467169 + L1MC4 LINE L1 6615 6725 -1317 * 2260 128 78 5 chr4 38861200 38861574 -163466773 - MLT2A1 LTR ERVL -41 403 3 5133 71 1 26 chr4 38861576 38862311 -163466036 - HERVL-A1 LTR ERVL 0 5654 4938 2213 72 48 0 chr4 38862308 38862599 -163465748 - HERVL LTR ERVL -4233 1421 1117 * 674 235 108 12 chr4 38862701 38863024 -163465323 + L1M1 LINE L1 3314 3667 -3898 1771 121 104 48 chr4 38863024 38863379 -163464968 - THE1C LTR MaLR 0 375 1 1794 62 0 0 chr4 38863384 38863609 -163464738 - THE1C-int LTR MaLR -6 1574 1350 * 4227 164 90 14 chr4 38863605 38864406 -163463941 - THE1C-int LTR MaLR -718 862 1 1250 268 44 66 chr4 38864406 38864871 -163463476 - THE1C LTR MaLR 0 375 1 4444 220 21 92 chr4 38864873 38866095 -163462252 + L1M1 LINE L1 3665 4728 -2837 1465 198 3 24 chr4 38866095 38866410 -163461937 + AluJb SINE Alu 1 309 0 4444 220 21 92 chr4 38866410 38866939 -163461408 + L1M1 LINE L1 4728 5293 -2272 27 0 0 0 chr4 38868858 38868885 -163459462 + AT_rich Low_complexity Low_complexity 1 27 0 350 305 47 16 chr4 38868969 38869097 -163459250 + MIR SINE MIR 82 213 -49 1392 210 7 4 chr4 38869137 38869408 -163458939 + AluJo SINE Alu 21 292 -20 437 98 16 0 chr4 38869508 38869569 -163458778 - Alu SINE Alu -255 63 2 1336 153 59 4 chr4 38869570 38869825 -163458522 - L1MA4A LINE L1 -474 5829 5561 5375 203 32 20 chr4 38869826 38870299 -163458048 - L1 LINE L1 -2550 4298 3832 1746 181 0 23 chr4 38870299 38870608 -163457739 - AluJb SINE Alu -10 302 1 5375 203 32 20 chr4 38870608 38872319 -163456028 - L1 LINE L1 -3016 3832 2086 348 365 0 0 chr4 38872401 38872516 -163455831 - MLT1H LTR MaLR -205 344 230 872 136 43 5 chr4 38872517 38872701 -163455646 - L1M2 LINE L1 -4760 2089 1899 3447 248 23 58 chr4 38872884 38873901 -163454446 - L1M2 LINE L1 -4964 1885 905 756 191 30 83 chr4 38874058 38874288 -163454059 + MER20 DNA MER1_type 1 218 -1 368 310 120 0 chr4 38875514 38875672 -163452675 - MIR SINE MIR -22 240 64 2435 110 5 32 chr4 38875751 38876125 -163452222 - THE1B LTR MaLR 0 364 1 438 203 0 98 chr4 38876364 38876507 -163451840 - THE1B LTR MaLR -235 129 1 216 267 0 0 chr4 38876922 38876967 -163451380 + polypyrimidine Low_complexity Low_complexity 4 48 0 246 247 13 26 chr4 38877001 38877078 -163451269 - MLT1H1 LTR MaLR -15 540 465 792 241 96 5 chr4 38877301 38877500 -163450847 - MLT1H LTR MaLR -326 223 7 2494 180 12 96 chr4 38878138 38878685 -163449662 - MLT2B3 LTR ERVL 0 554 -38 186 43 0 0 chr4 38878685 38878708 -163449639 + (TC)n Simple_repeat Simple_repeat 2 24 0 1682 171 16 23 chr4 38878711 38879021 -163449326 - AluJb SINE Alu -4 308 1 2494 180 12 96 chr4 38879021 38879074 -163449273 - MLT2B3 LTR ERVL -497 57 1 880 321 46 27 chr4 38879497 38880123 -163448224 - L1MC4a LINE L1 -1877 6211 5574 258 281 25 25 chr4 38880273 38880394 -163447953 - L1MC4a LINE L1 -1121 5305 5185 4330 260 52 31 chr4 38880410 38881413 -163446934 - L1MCa LINE L1 -2155 4271 3211 2294 96 3 0 chr4 38881413 38881715 -163446632 - AluSc SINE Alu -6 303 1 4330 260 52 31 chr4 38881715 38882516 -163445831 - L1MCa LINE L1 -3215 3211 2428 626 90 0 0 chr4 38883281 38883370 -163444977 - AluSg/x SINE Alu -5 307 219 2623 72 35 0 chr4 38883370 38883716 -163444631 - L1P3 LINE L1 -377 5777 5420 1814 95 38 0 chr4 38883717 38884001 -163444346 + L1PA8 LINE L1 5883 6176 0 2576 223 35 22 chr4 38884014 38884926 -163443421 + L1M3b LINE L1 1109 1996 -4355 933 248 105 50 chr4 38884933 38885296 -163443051 - MSTD LTR MaLR -13 383 1 3477 240 58 12 chr4 38885307 38886792 -163441555 + L1MA9 LINE L1 2893 4461 -3104 1087 242 14 3 chr4 38886792 38887081 -163441266 + L1P LINE L1 5040 5331 -815 275 156 0 0 chr4 38887181 38887226 -163441121 + L1MA9 LINE L1 5227 5271 -2294 1445 188 33 8 chr4 38887226 38887632 -163440715 + L1MA9 LINE L1 6467 6879 -743 644 143 45 38 chr4 38887603 38887736 -163440611 + L1MA9 LINE L1 7208 7341 -390 * 2805 179 75 12 chr4 38887748 38888346 -163440001 + L1MC3 LINE L1 7149 7784 -1 1888 150 69 14 chr4 38888787 38889134 -163439213 - Tigger3(Golem) DNA MER2_type 0 3029 2664 270 321 24 54 chr4 38889230 38889398 -163438949 + L2 LINE L2 2472 2634 -680 253 331 72 33 chr4 38889471 38889652 -163438695 - L2 LINE L2 -212 3060 2873 640 254 104 0 chr4 38890386 38890559 -163437788 + MER20 DNA MER1_type 29 219 0 462 340 64 31 chr4 38891040 38891579 -163436768 + L2 LINE L2 2679 3313 0 312 309 69 17 chr4 38891840 38892015 -163436332 + MIR SINE MIR 79 262 0 761 147 0 0 chr4 38892480 38892596 -163435751 + THE1B LTR MaLR 13 128 -236 10744 114 10 5 chr4 38892633 38894191 -163434156 + THE1C-int LTR MaLR 15 1580 0 1081 163 64 21 chr4 38894191 38894421 -163433926 + THE1C LTR MaLR 1 230 -125 6352 145 15 2 chr4 38894730 38895811 -163432536 - L1P LINE L1 -791 5355 4261 275 395 55 0 chr4 38895896 38896005 -163432342 + L2 LINE L2 3140 3254 -18 29 28 0 0 chr4 38896305 38896341 -163432006 + AT_rich Low_complexity Low_complexity 1 36 0 1577 114 4 17 chr4 38896792 38897029 -163431318 + AluSg/x SINE Alu 66 299 -13 297 152 0 0 chr4 38897654 38897700 -163430647 - MIR SINE MIR -1 261 216 21 0 0 0 chr4 38897740 38897761 -163430586 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4 38898018 38898049 -163430298 + AT_rich Low_complexity Low_complexity 1 31 0 856 299 57 32 chr4 38898521 38899141 -163429206 - L1M4 LINE L1 -2741 4107 3449 2861 137 14 97 chr4 38899141 38899441 -163428906 - MER1A DNA MER1_type -2173 527 296 1966 109 14 0 chr4 38899441 38899726 -163428621 - AluSp SINE Alu -7 306 18 2861 137 14 97 chr4 38899726 38900000 -163428347 - MER1A DNA MER1_type -2404 296 1 856 299 57 32 chr4 38900000 38900426 -163427921 - L1M4 LINE L1 -3399 3449 3035 24 32 0 0 chr4 38900685 38900716 -163427631 + AT_rich Low_complexity Low_complexity 1 31 0 23 86 0 0 chr4 38900760 38900818 -163427529 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr4 38900866 38900888 -163427459 + AT_rich Low_complexity Low_complexity 1 22 0 300 279 53 42 chr4 38900925 38901115 -163427232 - L1M4 LINE L1 -4270 2579 2388 429 284 22 71 chr4 38901328 38901511 -163426836 + MIR SINE MIR 76 249 -13 1846 184 24 27 chr4 38901816 38902192 -163426155 - THE1C LTR MaLR 0 375 1 689 196 47 12 chr4 38902859 38903513 -163424834 + L1MC2 LINE L1 6137 6767 -997 2413 48 7 0 chr4 38903513 38903808 -163424539 + AluY SINE Alu 1 297 -14 689 196 47 12 chr4 38903808 38903821 -163424526 + L1MC2 LINE L1 6767 7764 0 232 182 0 0 chr4 38904061 38904116 -163424231 + L2 LINE L2 2047 2101 -1213 298 263 218 45 chr4 38904126 38904282 -163424065 + L2 LINE L2 2804 2986 -327 646 264 25 15 chr4 38904302 38904503 -163423844 + L2 LINE L2 3111 3313 0 820 293 88 65 chr4 38904725 38905383 -163422964 + L1ME3A LINE L1 2861 3533 -2613 380 317 138 6 chr4 38905871 38906038 -163422309 - MIR SINE MIR -24 238 50 368 314 78 52 chr4 38906129 38906186 -163422161 + L1ME3A LINE L1 4960 5014 -1132 2135 130 10 0 chr4 38906186 38906487 -163421860 + AluSx SINE Alu 1 304 -8 368 314 78 52 chr4 38906487 38906735 -163421612 + L1ME3A LINE L1 5014 5273 -873 442 291 103 54 chr4 38906744 38907373 -163420974 + L1ME3A LINE L1 5287 5946 -224 1271 239 73 5 chr4 38907724 38908134 -163420213 + MER69B DNA AcHobo 742 1179 -47 26 50 0 0 chr4 38908402 38908442 -163419905 + AT_rich Low_complexity Low_complexity 1 40 0 307 314 139 42 chr4 38908795 38909082 -163419265 - L2 LINE L2 -8 3305 2991 311 366 11 16 chr4 38909302 38909493 -163418854 + L1ME3A LINE L1 5779 5968 -202 523 138 23 0 chr4 38910000 38910087 -163418260 - L1MB2 LINE L1 -28 6143 6055 1892 53 29 0 chr4 38910112 38910356 -163417991 - L1PA4 LINE L1 -3 6152 5902 4845 33 3 0 chr4 38910356 38910932 -163417415 + L1PA4 LINE L1 5305 5882 -273 394 290 173 67 chr4 38912544 38912844 -163415503 + MLT1H LTR MaLR 13 344 -205 25 0 0 0 chr4 38913112 38913137 -163415210 + AT_rich Low_complexity Low_complexity 1 25 0 183 42 0 0 chr4 38913718 38913742 -163414605 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2407 60 0 0 chr4 38913742 38914044 -163414303 - L1PA7 LINE L1 -12 6142 5841 1284 279 65 6 chr4 38915473 38915981 -163412366 + L1MB4 LINE L1 3802 4339 -1807 332 321 75 16 chr4 38916023 38916210 -163412137 + L1MB4 LINE L1 4620 4817 -1329 514 232 75 75 chr4 38916356 38916452 -163411895 + MER33 DNA MER1_type 23 118 -2467 4517 33 2 2 chr4 38916452 38916994 -163411353 + L1PA3 LINE L1 5611 6152 -3 514 232 75 75 chr4 38916994 38917177 -163411170 + MER33 DNA MER1_type 117 302 -22 413 282 44 73 chr4 38917458 38917731 -163410616 + L1MB4 LINE L1 5304 5568 -2240 311 224 12 0 chr4 38917810 38917895 -163410452 + L1MB4 LINE L1 6095 6180 0 236 222 14 0 chr4 38918148 38918220 -163410127 + (TA)n Simple_repeat Simple_repeat 2 74 0 22 35 0 0 chr4 38918426 38918455 -163409892 + AT_rich Low_complexity Low_complexity 1 29 0 208 339 0 0 chr4 38918768 38918830 -163409517 + (CACCAT)n Simple_repeat Simple_repeat 5 66 0 3532 263 71 37 chr4 38919325 38920516 -163407831 + L1MB1 LINE L1 1 1151 -4740 1962 163 30 25 chr4 38920516 38920878 -163407469 - THE1B LTR MaLR 0 364 1 3532 263 71 37 chr4 38920878 38921054 -163407293 + L1MB1 LINE L1 1151 1054 -4837 209 33 33 0 chr4 38921054 38921084 -163407263 + (TTATA)n Simple_repeat Simple_repeat 1 31 0 3532 263 71 37 chr4 38921084 38921416 -163406931 + L1MB1 LINE L1 1053 1373 -4518 2618 102 22 59 chr4 38921418 38921879 -163406468 + MLT2A1 LTR ERVL 1 444 0 7810 86 8 5 chr4 38921879 38922932 -163405415 + HERVL-A1 LTR ERVL 1 1057 -4597 1277 179 0 42 chr4 38923209 38923471 -163404876 + AluJb SINE Alu 62 312 0 5447 206 20 20 chr4 38923496 38924943 -163403404 + L1MB1 LINE L1 3842 5298 -694 225 77 0 58 chr4 38924943 38924995 -163403352 + (TA)n Simple_repeat Simple_repeat 1 49 0 3078 159 45 37 chr4 38925071 38925697 -163402650 + L1MB1 LINE L1 5313 5946 -46 2127 120 0 0 chr4 38925697 38925996 -163402351 + AluSg SINE Alu 1 299 -11 3078 159 45 37 chr4 38925996 38926043 -163402304 + L1MB1 LINE L1 5946 5991 -1 268 278 65 47 chr4 38928049 38928218 -163400129 - MLT1K LTR MaLR -8 580 409 438 321 44 19 chr4 38928327 38928486 -163399861 - MLT1K LTR MaLR -319 269 107 342 304 107 9 chr4 38929146 38929258 -163399089 - L2 LINE L2 -4 3309 3187 3740 85 10 2 chr4 38929820 38930316 -163398031 + LTR3b LTR ERVK 1 500 0 1946 132 50 50 chr4 38930337 38930553 -163397794 - THE1B LTR MaLR 0 364 149 2008 103 7 3 chr4 38930553 38930835 -163397512 + AluY SINE Alu 2 284 -27 297 0 0 0 chr4 38930835 38930868 -163397479 + (CA)n Simple_repeat Simple_repeat 2 34 0 1946 132 50 50 chr4 38930868 38931014 -163397333 - THE1B LTR MaLR -213 151 1 293 266 13 13 chr4 38931700 38931779 -163396568 + MER81 DNA DNA 36 114 0 702 297 60 4 chr4 38931823 38932055 -163396292 + MIR SINE MIR 18 262 0 22 0 0 0 chr4 38932636 38932658 -163395689 + AT_rich Low_complexity Low_complexity 1 22 0 719 228 0 30 chr4 38933252 38933419 -163394928 + MER58B DNA MER1_type 177 338 -3 185 371 0 0 chr4 38935370 38935440 -163392907 + MIR SINE MIR 47 116 -146 292 288 12 0 chr4 38935489 38935569 -163392778 + L2 LINE L2 3232 3312 -1 289 245 51 96 chr4 38935830 38935891 -163392456 + MLT1H LTR MaLR 188 250 -299 4679 91 15 12 chr4 38935891 38936549 -163391798 + PABL_A LTR ERV1 1 660 0 289 245 51 96 chr4 38936549 38936769 -163391578 + MLT1H LTR MaLR 250 549 0 4780 204 30 25 chr4 38936894 38938948 -163389399 + L1MA9 LINE L1 4248 6310 -2 331 314 76 25 chr4 38939078 38939196 -163389151 - L2 LINE L2 0 3313 3190 2460 288 100 24 chr4 38939626 38939898 -163388449 - L2 LINE L2 -5 3308 3058 2205 87 39 0 chr4 38939898 38940184 -163388163 + AluSp SINE Alu 1 297 -16 2460 288 100 24 chr4 38940184 38941174 -163387173 - L2 LINE L2 -255 3058 1938 412 273 56 25 chr4 38941174 38941335 -163387012 - L2 LINE L2 -1587 1727 1562 22 70 0 0 chr4 38942988 38943031 -163385316 + AT_rich Low_complexity Low_complexity 1 43 0 888 258 35 62 chr4 38943089 38943564 -163384783 - PABL_B LTR ERV1 0 667 53 261 340 10 10 chr4 38944463 38944566 -163383781 + MER5B DNA MER1_type 2 104 -74 211 312 81 49 chr4 38944811 38945058 -163383289 - L2 LINE L2 -1812 1502 1248 956 251 115 75 chr4 38945181 38945702 -163382645 + MLT1F LTR MaLR 1 542 0 2215 78 13 3 chr4 38945820 38946127 -163382220 + AluY SINE Alu 1 310 -1 324 0 0 0 chr4 38946974 38947010 -163381337 + (CA)n Simple_repeat Simple_repeat 1 36 0 215 286 0 29 chr4 38947651 38947721 -163380626 + (CATATA)n Simple_repeat Simple_repeat 1 68 0 194 128 26 0 chr4 38947727 38947766 -163380581 + (CA)n Simple_repeat Simple_repeat 1 40 0 293 407 62 12 chr4 38948513 38948771 -163379576 + L2 LINE L2 2553 2823 -491 2310 145 46 5 chr4 38949325 38949739 -163378608 + MER39B LTR ERV1 1 431 -222 929 172 24 0 chr4 38949865 38950034 -163378313 + MER4A LTR ERV1 491 663 -1 1177 132 14 27 chr4 38950040 38950137 -163378210 + MER39B LTR ERV1 433 530 -123 3143 151 28 77 chr4 38950137 38950864 -163377483 - LTR8 LTR ERV1 0 691 1 1177 132 14 27 chr4 38950864 38950986 -163377361 + MER39B LTR ERV1 530 649 -4 2183 107 0 41 chr4 38952036 38952355 -163375992 + AluSx SINE Alu 1 306 -6 25 0 0 0 chr4 38952606 38952631 -163375716 + AT_rich Low_complexity Low_complexity 1 25 0 794 116 0 52 chr4 38952634 38952789 -163375558 - L1MA7 LINE L1 -7 6284 6138 21 0 0 0 chr4 38954312 38954333 -163374014 + AT_rich Low_complexity Low_complexity 1 21 0 247 333 43 0 chr4 38954919 38955012 -163373335 - L2 LINE L2 -1 3271 3175 361 321 37 19 chr4 38955554 38955716 -163372631 - L2 LINE L2 -466 2848 2684 1590 221 37 55 chr4 38957478 38957990 -163370357 + MLT1D LTR MaLR 1 503 -2 387 0 0 0 chr4 38959066 38959109 -163369238 + (CA)n Simple_repeat Simple_repeat 2 44 0 1831 188 97 13 chr4 38959239 38959632 -163368715 - MSTB LTR MaLR 0 426 1 21 0 0 0 chr4 38959755 38959776 -163368571 + AT_rich Low_complexity Low_complexity 1 21 0 26060 115 6 11 chr4 38960208 38964398 -163363949 + L1P LINE L1 11 4181 -1965 232 267 11 22 chr4 38964995 38965085 -163363262 + T-rich Low_complexity Low_complexity 1 89 0 22 0 0 0 chr4 38966601 38966623 -163361724 + AT_rich Low_complexity Low_complexity 1 22 0 220 270 0 36 chr4 38967922 38968033 -163360314 + (TTTG)n Simple_repeat Simple_repeat 2 108 0 331 269 55 28 chr4 38970152 38970334 -163358013 - L1M2 LINE L1 -4018 2831 2645 22 0 0 0 chr4 38971895 38971917 -163356430 + GC_rich Low_complexity Low_complexity 1 22 0 607 189 14 14 chr4 38975660 38975803 -163352544 + L1MA10 LINE L1 6179 6321 -13 378 282 145 22 chr4 38975838 38976065 -163352282 + L1ME4a LINE L1 5710 5964 -157 1253 202 81 42 chr4 38976186 38976567 -163351780 + L1MC3 LINE L1 6688 7083 -702 2215 144 14 5 chr4 38976587 38977023 -163351324 + L1P4 LINE L1 5208 5646 -520 22 35 0 0 chr4 38979736 38979765 -163348582 + GC_rich Low_complexity Low_complexity 1 29 0 3228 138 9 29 chr4 38980045 38980604 -163347743 + L1PB1 LINE L1 5591 6138 -13 1792 206 30 10 chr4 38980625 38981125 -163347222 + L1 LINE L1 3047 3556 -2590 8506 67 5 4 chr4 38981225 38982988 -163345359 + L1PA6 LINE L1 4170 5931 -223 222 265 24 12 chr4 38984574 38984657 -163343690 + CT-rich Low_complexity Low_complexity 1 84 0 351 0 0 0 chr4 38984768 38984807 -163343540 + (TG)n Simple_repeat Simple_repeat 1 39 0 700 263 52 5 chr4 38984989 38985183 -163343164 + MIR SINE MIR 60 262 0 299 306 0 12 chr4 38986440 38986525 -163341822 + CT-rich Low_complexity Low_complexity 3 86 0 358 349 53 13 chr4 38986574 38986726 -163341621 + MIR SINE MIR 93 250 -12 285 194 16 16 chr4 38986745 38986807 -163341540 - MER67D LTR ERV1 0 514 453 1392 211 12 56 chr4 38986870 38987211 -163341136 - MER67D LTR ERV1 -188 326 1 2608 166 29 73 chr4 38988352 38988983 -163339364 - MER6A DNA MER2_type 0 605 3 22 56 0 0 chr4 38990633 38990669 -163337678 + AT_rich Low_complexity Low_complexity 1 36 0 712 107 0 0 chr4 38991133 38991236 -163337111 - L1PA15 LINE L1 -6 6159 6057 2266 145 28 46 chr4 38991247 38991475 -163336872 - MSTA LTR MaLR 0 428 210 2342 81 0 0 chr4 38991475 38991773 -163336574 - AluY SINE Alu -13 298 1 2266 145 28 46 chr4 38991773 38991978 -163336369 - MSTA LTR MaLR -218 210 3 230 91 55 36 chr4 38992215 38992270 -163336077 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 311 147 0 13 chr4 38992719 38992794 -163335553 + (TC)n Simple_repeat Simple_repeat 2 75 0 234 0 0 0 chr4 38993129 38993155 -163335192 + (T)n Simple_repeat Simple_repeat 1 26 0 984 297 88 31 chr4 38993357 38994000 -163334347 - L2 LINE L2 -2 3311 2633 1005 221 18 9 chr4 38994641 38994863 -163333484 - MER58A DNA MER1_type 0 224 1 211 231 359 0 chr4 38994901 38994979 -163333368 + MER5A DNA MER1_type 9 114 -75 597 209 7 36 chr4 38995174 38995313 -163333034 + Charlie8 DNA MER1_type 94 228 -2189 1759 156 55 30 chr4 38996959 38997325 -163331022 - THE1C LTR MaLR 0 375 1 2196 116 0 3 chr4 38997350 38997653 -163330694 - AluSx SINE Alu -10 302 1 28 0 0 0 chr4 38998909 38998937 -163329410 + AT_rich Low_complexity Low_complexity 1 28 0 2022 212 77 27 chr4 38999513 39000036 -163328311 - MLT1H LTR MaLR 0 549 1 2974 197 46 18 chr4 39000248 39000970 -163327377 - L1ME1 LINE L1 -165 6070 5329 810 287 89 27 chr4 39000984 39001397 -163326950 + LTR40a LTR ERVL 5 457 -5 356 192 125 42 chr4 39001589 39001709 -163326638 - L1ME1 LINE L1 -3873 2523 2394 207 0 0 0 chr4 39001711 39001734 -163326613 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1350 201 4 36 chr4 39001745 39002019 -163326328 - AluJo SINE Alu -36 276 12 3630 269 63 35 chr4 39002037 39003819 -163324528 - L1ME1 LINE L1 -4008 2388 557 429 284 81 55 chr4 39004098 39004334 -163324013 - L1ME1 LINE L1 -5956 440 199 1411 207 27 27 chr4 39004334 39004629 -163323718 - AluJo SINE Alu -7 305 11 463 277 31 6 chr4 39004645 39004804 -163323543 - L1ME1 LINE L1 -6192 204 42 12038 221 29 16 chr4 39005346 39009671 -163318676 - L1PA16 LINE L1 -8 6158 1789 26 30 0 0 chr4 39009778 39009811 -163318536 + AT_rich Low_complexity Low_complexity 1 33 0 1840 158 0 7 chr4 39010007 39010292 -163318055 + AluSx SINE Alu 1 283 -29 268 264 40 16 chr4 39010629 39010754 -163317593 - L1ME4a LINE L1 -21 6100 5973 1230 279 78 25 chr4 39011549 39012065 -163316282 - MLT1H LTR MaLR 0 549 7 2541 84 14 0 chr4 39012200 39012545 -163315802 - HERVL-A2 LTR ERVL -5304 350 1 394 91 0 0 chr4 39012545 39012600 -163315747 - MLT2A2 LTR ERVL 0 453 399 315 190 0 100 chr4 39012631 39012731 -163315616 - L1MC4 LINE L1 -1339 6703 6614 348 103 0 0 chr4 39012739 39012797 -163315550 + (TA)n Simple_repeat Simple_repeat 2 59 0 1490 62 54 120 chr4 39012797 39013073 -163315274 - MLT2A2 LTR ERVL -195 258 1 789 209 37 28 chr4 39013073 39013288 -163315059 + THE1C LTR MaLR 107 323 -52 764 185 0 15 chr4 39013521 39013656 -163314691 + FLAM_C SINE Alu 1 133 0 326 217 103 98 chr4 39013920 39014307 -163314040 + L1ME4a LINE L1 5693 6081 -40 1638 112 13 70 chr4 39014343 39014655 -163313692 - L1MA6 LINE L1 0 6300 6007 2312 193 29 23 chr4 39014761 39015501 -163312846 + L1M3 LINE L1 5004 5745 -438 1721 139 102 24 chr4 39015501 39015833 -163312514 + MSTA LTR MaLR 1 358 -70 2462 243 42 9 chr4 39015934 39016903 -163311444 + L1M2 LINE L1 2540 3489 -4076 2097 111 3 7 chr4 39017005 39017293 -163311054 + AluSc SINE Alu 1 287 -22 945 268 43 31 chr4 39017403 39017754 -163310593 + HAL1 LINE L1 1347 1701 -806 2117 136 0 0 chr4 39018238 39018540 -163309807 - AluJb SINE Alu -10 302 1 200 213 21 0 chr4 39019233 39019280 -163309067 + GA-rich Low_complexity Low_complexity 2 49 0 690 262 87 34 chr4 39019319 39019573 -163308774 + MIR SINE MIR 3 261 -1 1980 188 3 6 chr4 39019754 39020100 -163308247 + MLT1A1 LTR MaLR 21 365 0 232 262 33 0 chr4 39020258 39020319 -163308028 + LTR16A LTR ERVL 383 445 -5 4691 81 11 0 chr4 39021484 39022123 -163306224 + L1PA13 LINE L1 5517 6162 -1 23 68 0 0 chr4 39024172 39024216 -163304131 + AT_rich Low_complexity Low_complexity 1 44 0 2013 83 12 0 chr4 39024723 39024975 -163303372 - AluSx SINE Alu -54 258 4 3578 129 81 24 chr4 39024978 39025985 -163302362 - L1MA5A LINE L1 -345 5952 4897 24 53 0 0 chr4 39027043 39027081 -163301266 + AT_rich Low_complexity Low_complexity 1 38 0 503 265 8 43 chr4 39027933 39028078 -163300269 + MIR SINE MIR 20 158 -61 300 53 0 0 chr4 39028671 39028709 -163299638 + (TC)n Simple_repeat Simple_repeat 2 39 0 383 0 21 0 chr4 39028899 39028946 -163299401 + (GA)n Simple_repeat Simple_repeat 1 48 0 387 307 34 39 chr4 39029061 39029266 -163299081 - MIR3 SINE MIR -2 206 3 5259 118 14 37 chr4 39029394 39030251 -163298096 + MER4D LTR ERV1 58 894 -9 402 79 11 0 chr4 39030559 39030625 -163297722 - L1M4 LINE L1 -638 5525 5456 24 0 0 0 chr4 39031056 39031080 -163297267 + AT_rich Low_complexity Low_complexity 1 24 0 313 281 73 21 chr4 39031821 39031917 -163296430 + L2 LINE L2 3208 3308 -5 298 227 21 41 chr4 39033080 39033177 -163295170 - MIR SINE MIR -46 216 122 219 151 27 5 chr4 39033881 39033958 -163294389 + L2 LINE L2 3191 3308 -5 366 345 52 11 chr4 39033972 39034146 -163294201 - MIR SINE MIR -61 201 21 193 80 0 0 chr4 39035502 39035527 -163292820 - L2 LINE L2 -20 3293 3269 497 296 19 51 chr4 39036052 39036268 -163292079 + MIR SINE MIR 2 210 -52 242 284 27 14 chr4 39036963 39037037 -163291310 - LTR67 LTR ERVL -383 174 100 267 151 159 103 chr4 39037178 39037304 -163291043 - MLT1F LTR MaLR 0 542 410 1925 159 207 19 chr4 39037829 39038369 -163289978 + LTR8A LTR ERV1 1 642 -85 184 179 0 36 chr4 39039639 39039695 -163288652 + CT-rich Low_complexity Low_complexity 5 58 0 207 0 0 0 chr4 39039855 39039878 -163288469 + (A)n Simple_repeat Simple_repeat 1 23 0 673 257 50 30 chr4 39040388 39040823 -163287524 - MLT1H LTR MaLR 0 549 13 2006 169 32 26 chr4 39041127 39041158 -163287189 + L1 LINE L1 3930 3959 -2187 2104 127 0 17 chr4 39041158 39041457 -163286890 + AluSx SINE Alu 1 294 -18 2006 169 32 26 chr4 39041457 39041887 -163286460 + L1 LINE L1 3959 4394 -1752 2090 127 14 0 chr4 39042098 39042389 -163285958 - AluSx SINE Alu -17 295 1 252 225 58 17 chr4 39042520 39042640 -163285707 + (TA)n Simple_repeat Simple_repeat 2 126 0 214 321 0 0 chr4 39042899 39042955 -163285392 + MIR SINE MIR 55 110 -152 259 253 0 0 chr4 39044015 39044090 -163284257 - MER103 DNA DNA -81 85 11 2100 124 0 0 chr4 39044243 39044557 -163283790 - AluSx SINE Alu 0 314 1 762 305 60 0 chr4 39044841 39045074 -163283273 - MIR SINE MIR -15 247 1 563 279 61 6 chr4 39045081 39045246 -163283101 - L2 LINE L2 -241 3072 2899 201 133 0 0 chr4 39046063 39046093 -163282254 + (CATA)n Simple_repeat Simple_repeat 3 32 0 308 314 146 22 chr4 39046190 39046327 -163282020 - L2 LINE L2 0 3272 3119 1541 205 30 19 chr4 39047268 39047629 -163280718 + MLT1A1 LTR MaLR 1 365 0 244 244 47 35 chr4 39047832 39047918 -163280429 - MLT1K LTR MaLR -320 268 182 1686 182 11 0 chr4 39049187 39049473 -163278874 + AluJo SINE Alu 1 289 -23 209 215 9 56 chr4 39050260 39050367 -163277980 + (TTTAA)n Simple_repeat Simple_repeat 4 105 0 571 286 98 10 chr4 39050576 39050779 -163277568 + MIR SINE MIR 29 249 -13 319 37 19 37 chr4 39050825 39050879 -163277468 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 195 42 0 0 chr4 39052452 39052476 -163275871 + (CA)n Simple_repeat Simple_repeat 2 25 0 216 0 0 0 chr4 39052685 39052709 -163275638 + (A)n Simple_repeat Simple_repeat 1 24 0 1941 145 13 32 chr4 39053298 39053392 -163274955 + L1MB1 LINE L1 5800 5894 -274 692 163 32 8 chr4 39053392 39053515 -163274832 + FLAM_C SINE Alu 1 126 -7 1941 145 13 32 chr4 39053515 39053793 -163274554 + L1MB1 LINE L1 5894 6165 -3 260 373 45 70 chr4 39054067 39054311 -163274036 - L2 LINE L2 -2 3270 3033 386 259 76 70 chr4 39054812 39054997 -163273350 + MER5A DNA MER1_type 1 186 -3 576 229 21 42 chr4 39055007 39055151 -163273196 + MER5B DNA MER1_type 36 176 -2 409 329 161 0 chr4 39055161 39055316 -163273031 - MER5A DNA MER1_type 0 189 10 205 162 0 0 chr4 39055792 39055829 -163272518 + (CA)n Simple_repeat Simple_repeat 1 37 0 1031 180 19 0 chr4 39055837 39056043 -163272304 + MLT2C2 LTR ERVL 1 210 -254 14303 83 2 1 chr4 39056144 39058225 -163270122 - L1P LINE L1 -1385 4761 2679 243 0 0 0 chr4 39059430 39059457 -163268890 + (T)n Simple_repeat Simple_repeat 1 27 0 195 42 0 0 chr4 39059664 39059688 -163268659 + (TG)n Simple_repeat Simple_repeat 2 25 0 1344 103 33 12 chr4 39060185 39060428 -163267919 - L1 LINE L1 -1338 4808 4561 216 278 28 28 chr4 39060974 39061082 -163267265 + GA-rich Low_complexity Low_complexity 1 108 0 630 245 20 7 chr4 39062247 39062394 -163265953 + MER58B DNA MER1_type 193 341 0 199 310 69 0 chr4 39062403 39062490 -163265857 - L2 LINE L2 -733 2581 2489 185 180 20 0 chr4 39062555 39062605 -163265742 + (TG)n Simple_repeat Simple_repeat 1 51 0 1992 157 16 0 chr4 39065015 39065320 -163263027 + AluSx SINE Alu 1 310 -2 665 211 0 0 chr4 39067084 39067207 -163261140 - FLAM_C SINE Alu -18 125 3 1000 261 32 19 chr4 39068085 39068399 -163259948 - LTR16A LTR ERVL 0 450 133 405 39 0 0 chr4 39068504 39068555 -163259792 + (TG)n Simple_repeat Simple_repeat 1 51 0 692 214 48 62 chr4 39068571 39068880 -163259467 + L1MC5 LINE L1 7634 7938 -23 1684 167 30 3 chr4 39069438 39069774 -163258573 + L1MA5 LINE L1 5948 6292 -8 382 164 14 0 chr4 39069879 39069952 -163258395 + L1MB7 LINE L1 6055 6128 -56 307 375 69 17 chr4 39070773 39071005 -163257342 + MIR SINE MIR 2 245 -17 361 268 131 16 chr4 39071073 39071256 -163257091 + L1ME LINE L1 5574 5777 -344 1058 150 82 0 chr4 39071350 39071644 -163256703 + L1MB2 LINE L1 5163 5474 -709 279 0 0 0 chr4 39071646 39071677 -163256670 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 680 188 8 23 chr4 39071681 39071814 -163256533 + FLAM_C SINE Alu 1 131 -12 1842 168 9 0 chr4 39071824 39072163 -163256184 + L1MB2 LINE L1 5486 5827 -344 2542 38 0 0 chr4 39072164 39072457 -163255890 + AluY SINE Alu 1 293 -18 1067 95 0 7 chr4 39072557 39072704 -163255643 + AluY SINE Alu 153 298 -13 7322 149 44 18 chr4 39072949 39074921 -163253426 - L1MA8 LINE L1 -12 6279 4239 192 40 0 0 chr4 39074921 39074946 -163253401 + (TA)n Simple_repeat Simple_repeat 1 25 0 7322 149 44 18 chr4 39074946 39075431 -163252916 - L1MA8 LINE L1 -2052 4239 3768 236 189 19 0 chr4 39077994 39078047 -163250300 + (CGGG)n Simple_repeat Simple_repeat 2 55 0 428 303 36 30 chr4 39078156 39078321 -163250026 - MIR SINE MIR -88 174 9 1058 269 49 59 chr4 39079941 39080432 -163247915 + L2 LINE L2 2815 3300 -13 272 329 19 25 chr4 39082012 39082173 -163246174 - L1M3c LINE L1 -5981 160 1 225 125 0 42 chr4 39082823 39082871 -163245476 + L1MC4 LINE L1 6658 6703 -1339 647 289 57 30 chr4 39082890 39083070 -163245277 - L1MC4a LINE L1 -813 5333 5682 2385 74 0 13 chr4 39083070 39083380 -163244967 - AluY SINE Alu -5 306 1 647 289 57 30 chr4 39083380 39084079 -163244268 - L1MC4a LINE L1 -463 5683 5004 230 292 0 0 chr4 39084079 39084144 -163244203 + MIR SINE MIR 129 193 -69 356 278 22 0 chr4 39084861 39084951 -163243396 + MER5A DNA MER1_type 9 100 -89 214 283 53 80 chr4 39085249 39085362 -163242985 + L2 LINE L2 3204 3313 0 987 153 33 0 chr4 39085603 39085786 -163242561 - L1MB3 LINE L1 0 6183 5995 5671 58 25 37 chr4 39085786 39087135 -163241212 + SVA Other Other 1 1166 -220 195 42 0 0 chr4 39087237 39087261 -163241086 + (CA)n Simple_repeat Simple_repeat 1 24 0 1764 145 9 69 chr4 39088614 39088946 -163239401 + AluSx SINE Alu 1 312 0 964 192 145 41 chr4 39089776 39090141 -163238206 + LTR37A LTR ERV1 1 403 -23 2393 109 0 0 chr4 39090141 39090453 -163237894 - AluSx SINE Alu 0 312 1 2279 117 0 0 chr4 39090464 39090773 -163237574 - AluSx SINE Alu -3 309 1 343 360 18 6 chr4 39091818 39091982 -163236365 + LTR67 LTR ERVL 45 210 -347 2204 110 0 10 chr4 39092045 39092345 -163236002 + AluSq SINE Alu 2 298 -15 733 215 135 33 chr4 39092392 39092500 -163235847 - HsTC2 DNA Tc2 0 1898 1802 1856 168 9 25 chr4 39092500 39092816 -163235531 - AluJo SINE Alu -1 311 1 733 215 135 33 chr4 39092816 39093106 -163235241 - HsTC2 DNA Tc2 -96 1802 1282 290 219 0 31 chr4 39093105 39093169 -163235178 - HsTC2 DNA Tc2 -1757 141 80 * 904 245 103 57 chr4 39093860 39094402 -163233945 - MLT1L LTR MaLR -7 608 42 4357 99 3 2 chr4 39095052 39095680 -163232667 - L1PB2 LINE L1 0 6151 5523 250 331 95 34 chr4 39095846 39095994 -163232353 - MIR3 SINE MIR -50 158 2 412 270 98 43 chr4 39097618 39097781 -163230566 - L2 LINE L2 0 3313 3142 255 253 0 72 chr4 39097870 39097953 -163230394 + L2 LINE L2 3196 3272 0 963 216 9 5 chr4 39100935 39101157 -163227190 + L1PA16 LINE L1 5944 6166 0 445 337 83 0 chr4 39101274 39101455 -163226892 + LTR33 LTR ERVL 2 197 -324 370 225 99 28 chr4 39101514 39101696 -163226651 + LTR33 LTR ERVL 327 521 0 285 357 32 22 chr4 39101742 39101927 -163226420 - MIR SINE MIR -54 208 19 310 311 161 22 chr4 39103233 39103413 -163224934 + L2 LINE L2 2428 2632 -682 1719 192 11 50 chr4 39103421 39103801 -163224546 - MLT1A1 LTR MaLR 0 365 1 3245 153 20 77 chr4 39104064 39104796 -163223551 - LTR8 LTR ERV1 0 691 1 1176 235 73 55 chr4 39104941 39105417 -163222930 + MLT1H LTR MaLR 62 546 -3 204 300 100 0 chr4 39105461 39105521 -163222826 - L2 LINE L2 -71 3201 3136 351 265 87 94 chr4 39105569 39105961 -163222386 - L2 LINE L2 -754 2560 2172 192 77 0 0 chr4 39107978 39108004 -163220343 + (T)n Simple_repeat Simple_repeat 1 26 0 198 287 57 82 chr4 39108034 39108156 -163220191 - L2 LINE L2 -15 3257 3139 271 371 48 30 chr4 39109842 39110009 -163218338 + L2 LINE L2 3041 3210 -62 413 218 129 0 chr4 39110044 39110145 -163218202 + MER45 DNA AcHobo 2 115 -1466 256 235 0 0 chr4 39110276 39110327 -163218020 + MER45 DNA AcHobo 1531 1581 0 501 265 74 6 chr4 39110391 39110553 -163217794 + MIR SINE MIR 51 223 -39 1222 197 46 21 chr4 39110568 39110893 -163217454 + L1MA7 LINE L1 5866 6198 -93 272 242 16 0 chr4 39111228 39111290 -163217057 + (TCTG)n Simple_repeat Simple_repeat 4 66 0 417 54 0 0 chr4 39111585 39111641 -163216706 + (GA)n Simple_repeat Simple_repeat 1 56 0 1004 211 57 8 chr4 39112014 39112279 -163216068 + MER33 DNA MER1_type 1 278 -46 797 61 18 0 chr4 39112380 39112494 -163215853 + L1P1 LINE L1 1 116 -6030 * 33752 35 0 0 chr4 39112476 39116901 -163211446 + L1P1 LINE L1 1094 5517 -638 478 306 46 65 chr4 39117046 39117369 -163210978 + L2 LINE L2 2997 3313 0 183 333 25 25 chr4 39117401 39117482 -163210865 - MER5A DNA MER1_type -26 163 83 284 328 15 45 chr4 39117621 39117758 -163210589 + MER5B DNA MER1_type 36 179 -10 561 321 100 6 chr4 39117899 39118238 -163210109 - MLT1L LTR MaLR -26 589 219 254 28 0 28 chr4 39118591 39118627 -163209720 + (TG)n Simple_repeat Simple_repeat 2 36 0 2133 127 3 22 chr4 39118880 39119196 -163209151 + AluSx SINE Alu 1 310 -2 1681 138 190 11 chr4 39119337 39119700 -163208647 + MSTA LTR MaLR 1 428 0 3577 89 47 0 chr4 39121949 39122478 -163205869 - MER41A LTR ERV1 0 554 1 332 359 87 21 chr4 39122892 39123179 -163205168 + L2 LINE L2 2656 2961 -353 186 322 67 94 chr4 39123274 39123454 -163204893 + L2 LINE L2 3090 3264 -8 23 0 0 0 chr4 39123507 39123530 -163204817 + AT_rich Low_complexity Low_complexity 1 23 0 316 93 0 173 chr4 39123557 39123632 -163204715 - Charlie5 DNA MER1_type 0 2623 2562 372 199 286 19 chr4 39123711 39123917 -163204430 - L1MEd LINE L1 -5270 849 589 498 271 61 124 chr4 39125052 39125388 -163202959 + HAL1 LINE L1 1113 1414 -1093 3617 108 15 0 chr4 39125388 39125918 -163202429 + L1PA13 LINE L1 5625 6162 -1 498 271 61 124 chr4 39125918 39126039 -163202308 + HAL1 LINE L1 1414 1541 -966 32 0 0 0 chr4 39126099 39126131 -163202216 + AT_rich Low_complexity Low_complexity 1 32 0 250 125 167 0 chr4 39126131 39126203 -163202144 - L1MA7 LINE L1 -1 6290 6207 3972 26 0 0 chr4 39126543 39127002 -163201345 + L1PA3 LINE L1 5694 6152 -3 1446 334 111 25 chr4 39127103 39128451 -163199896 + L2 LINE L2 1843 3312 -1 204 294 24 24 chr4 39128632 39128717 -163199630 + MIR SINE MIR 157 241 -21 2649 218 138 34 chr4 39130098 39130241 -163198106 - L1MC4a LINE L1 -82 7726 7599 2195 111 7 13 chr4 39130241 39130548 -163197799 - AluSp SINE Alu -8 305 1 2649 218 138 34 chr4 39130548 39130710 -163197637 - L1MC4a LINE L1 -209 7599 7455 1833 141 5 83 chr4 39130710 39131085 -163197262 + MER7A DNA MER2_type 2 345 -1 2649 218 138 34 chr4 39131085 39131796 -163196551 - L1MC4a LINE L1 -353 7455 6604 487 230 60 0 chr4 39132014 39132114 -163196233 + MER5A DNA MER1_type 4 109 -80 410 104 52 13 chr4 39132520 39132597 -163195750 - MADE1 DNA Mariner 0 80 1 21 0 0 0 chr4 39132687 39132708 -163195639 + AT_rich Low_complexity Low_complexity 1 21 0 2560 106 14 0 chr4 39132798 39133157 -163195190 + THE1B LTR MaLR 1 364 0 9455 137 36 17 chr4 39133158 39134707 -163193640 + THE1B-int LTR MaLR 2 1579 -1 2596 115 3 6 chr4 39134708 39135073 -163193274 + THE1B LTR MaLR 1 364 0 275 269 30 0 chr4 39135084 39135151 -163193196 - MIR SINE MIR -96 166 98 370 280 108 3 chr4 39135270 39135432 -163192915 + MIR SINE MIR 16 187 -73 379 229 144 8 chr4 39136398 39136516 -163191831 + MIR SINE MIR 33 166 -96 634 257 117 31 chr4 39136527 39136784 -163191563 + L2 LINE L2 3017 3295 -18 33 0 0 0 chr4 39136813 39136846 -163191501 + AT_rich Low_complexity Low_complexity 1 33 0 563 346 31 16 chr4 39137219 39137476 -163190871 - MIR SINE MIR 0 262 2 387 310 82 12 chr4 39137864 39138035 -163190312 - MIR SINE MIR -74 188 6 2239 107 0 10 chr4 39138321 39138620 -163189727 + AluY SINE Alu 1 296 -15 1092 235 94 11 chr4 39138670 39139071 -163189276 - MER57A LTR ERV1 -2 401 3 215 200 0 29 chr4 39139718 39139788 -163188559 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 243 185 25 99 chr4 39142619 39142700 -163185647 - MER106A DNA MER1_type 0 236 162 212 320 30 40 chr4 39142701 39142801 -163185546 + MER5B DNA MER1_type 79 177 -1 767 247 28 0 chr4 39142812 39142994 -163185353 - MER5A DNA MER1_type 0 189 3 465 304 143 19 chr4 39143014 39143175 -163185172 + MER5A DNA MER1_type 9 189 0 22 0 0 0 chr4 39143318 39143340 -163185007 + AT_rich Low_complexity Low_complexity 1 22 0 294 274 0 27 chr4 39144000 39144073 -163184274 + MER96 DNA MER1_type? 104 174 -1 1127 291 106 27 chr4 39144080 39144561 -163183786 - MLT1E LTR MaLR 0 593 75 2385 99 3 0 chr4 39144651 39144963 -163183384 - AluSq SINE Alu 0 313 1 303 191 0 0 chr4 39144968 39145036 -163183311 + CT-rich Low_complexity Low_complexity 2 69 0 450 176 0 44 chr4 39145184 39145275 -163183072 + MER90 LTR ERV1 3 89 -525 565 167 79 26 chr4 39145282 39145396 -163182951 + THE1C LTR MaLR 1 120 -255 319 81 0 32 chr4 39145410 39145472 -163182875 + (TA)n Simple_repeat Simple_repeat 2 61 0 260 149 0 54 chr4 39145484 39145558 -163182789 + (TA)n Simple_repeat Simple_repeat 2 71 0 414 195 0 0 chr4 39145566 39145653 -163182694 + (TATG)n Simple_repeat Simple_repeat 2 88 0 2725 101 23 8 chr4 39145655 39146051 -163182296 - MLT2A1 LTR ERVL -40 404 3 41713 88 17 2 chr4 39146051 39151621 -163176726 - HERVL-A1 LTR ERVL 0 5654 1 394 91 0 0 chr4 39151621 39151676 -163176671 - MLT2A1 LTR ERVL 0 453 399 315 190 0 100 chr4 39151707 39151807 -163176540 - L1MC4 LINE L1 -1339 6703 6614 348 103 0 0 chr4 39151815 39151873 -163176474 + (TA)n Simple_repeat Simple_repeat 2 59 0 1490 62 54 120 chr4 39151873 39152149 -163176198 - MLT2A2 LTR ERVL -195 258 1 1329 178 30 11 chr4 39152149 39152413 -163175934 + THE1C LTR MaLR 107 375 0 1193 261 43 10 chr4 39152415 39152864 -163175483 + MER90 LTR ERV1 106 610 -4 1967 125 0 20 chr4 39153418 39153721 -163174626 + AluSx SINE Alu 9 305 -7 267 103 0 0 chr4 39153982 39154021 -163174326 + (TA)n Simple_repeat Simple_repeat 2 40 0 951 129 29 0 chr4 39154348 39154487 -163173860 - MER30B DNA MER1_type -1 229 87 313 259 157 42 chr4 39156217 39156503 -163171844 - L1ME4a LINE L1 -38 6083 5765 212 338 0 0 chr4 39156508 39156582 -163171765 + (TAA)n Simple_repeat Simple_repeat 1 74 0 271 316 58 22 chr4 39156624 39156763 -163171584 - MIR SINE MIR -23 239 96 341 328 18 35 chr4 39156764 39156935 -163171412 - MER5A DNA MER1_type -11 178 11 390 313 14 14 chr4 39156785 39156932 -163171415 + MER5B DNA MER1_type 31 177 -1 856 264 33 7 chr4 39157073 39157346 -163171001 - MER93a LTR ERV1 -3 399 120 2265 105 0 0 chr4 39157487 39157783 -163170564 - AluSg SINE Alu -14 296 1 503 16 16 0 chr4 39158013 39158077 -163170270 + (TG)n Simple_repeat Simple_repeat 2 66 0 253 325 12 0 chr4 39158748 39158831 -163169516 + MIR3 SINE MIR 124 207 -1 22 35 0 0 chr4 39159008 39159037 -163169310 + AT_rich Low_complexity Low_complexity 1 29 0 2126 102 10 10 chr4 39159407 39159712 -163168635 - AluSx SINE Alu -2 310 6 248 311 14 0 chr4 39160235 39160309 -163168038 + L1MEd LINE L1 1362 1436 -5495 369 0 0 0 chr4 39160336 39160377 -163167970 + (CA)n Simple_repeat Simple_repeat 2 42 0 312 70 0 0 chr4 39160424 39160467 -163167880 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1263 141 52 19 chr4 39160540 39160810 -163167537 + L1MA5A LINE L1 6018 6296 -1 257 248 47 69 chr4 39160879 39161180 -163167167 + L1MEd LINE L1 1391 1872 -4967 620 289 98 68 chr4 39161204 39161779 -163166568 - L2 LINE L2 -73 3240 2661 23 33 0 0 chr4 39162193 39162223 -163166124 + AT_rich Low_complexity Low_complexity 1 30 0 417 280 130 34 chr4 39162400 39162639 -163165708 - L1ME3A LINE L1 -215 5947 5686 400 284 69 21 chr4 39162664 39162970 -163165377 - L1ME3A LINE L1 -580 5582 5288 234 180 0 0 chr4 39162984 39163061 -163165286 + A-rich Low_complexity Low_complexity 1 77 0 2198 138 31 14 chr4 39163179 39163533 -163164814 - THE1B LTR MaLR -4 360 1 234 321 58 11 chr4 39163567 39163757 -163164590 - L1ME3A LINE L1 -1039 5107 4909 235 262 36 12 chr4 39163923 39164007 -163164340 - L1ME3A LINE L1 -1546 4600 4515 447 291 54 41 chr4 39164150 39164445 -163163902 - L1ME3A LINE L1 -1983 4163 3865 2233 102 0 0 chr4 39164512 39164807 -163163540 + AluY SINE Alu 1 295 -16 22 0 0 0 chr4 39164808 39164830 -163163517 + AT_rich Low_complexity Low_complexity 1 22 0 188 292 62 0 chr4 39164872 39164937 -163163410 - MIR SINE MIR -70 192 124 484 274 132 15 chr4 39166249 39166453 -163161894 + MIR SINE MIR 26 253 -9 25 0 0 0 chr4 39166494 39166519 -163161828 + AT_rich Low_complexity Low_complexity 1 25 0 183 162 0 0 chr4 39166551 39166588 -163161759 + T-rich Low_complexity Low_complexity 1 37 0 1944 158 0 0 chr4 39166599 39166902 -163161445 - AluSx SINE Alu -9 303 1 212 317 106 16 chr4 39166917 39167040 -163161307 + MIR SINE MIR 129 262 0 1757 129 63 30 chr4 39167064 39167366 -163160981 + AluJb SINE Alu 1 312 0 297 0 0 0 chr4 39167371 39167404 -163160943 + (TA)n Simple_repeat Simple_repeat 2 34 0 2227 87 0 0 chr4 39167735 39168022 -163160325 + AluY SINE Alu 1 287 -24 216 0 0 0 chr4 39168025 39168049 -163160298 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 82 0 0 chr4 39168135 39168184 -163160163 + AT_rich Low_complexity Low_complexity 1 49 0 278 187 65 19 chr4 39169367 39169474 -163158873 + (TAGA)n Simple_repeat Simple_repeat 1 112 0 185 0 40 0 chr4 39170596 39170621 -163157726 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1849 148 0 14 chr4 39172435 39172725 -163155622 - AluSx SINE Alu -26 286 1 364 319 53 0 chr4 39172726 39172839 -163155508 - 7SLRNA srpRNA srpRNA -161 159 41 849 153 25 64 chr4 39173134 39173336 -163155011 - L1MA9 LINE L1 0 6312 6119 2373 151 16 50 chr4 39173484 39173927 -163154420 + MSTC LTR MaLR 1 428 0 3537 244 22 10 chr4 39173984 39175053 -163153294 + L1M4 LINE L1 2705 3786 -2360 2233 133 18 0 chr4 39175048 39175446 -163152901 - L1P LINE L1 -760 5386 4982 * 21 36 0 0 chr4 39175450 39175478 -163152869 + AT_rich Low_complexity Low_complexity 1 28 0 5027 114 13 8 chr4 39175482 39176237 -163152110 + L1PA11 LINE L1 5407 6165 -9 4418 226 60 15 chr4 39176374 39177766 -163150581 + L1M4 LINE L1 3861 5314 -832 526 144 0 99 chr4 39177764 39177875 -163150472 + L1MA9 LINE L1 5821 5920 -371 * 6470 134 38 47 chr4 39177875 39179143 -163149204 + MER52C LTR ERV1 22 1278 0 1720 162 53 21 chr4 39179145 39179521 -163148826 + L1MA9 LINE L1 5925 6312 0 434 200 0 0 chr4 39179524 39179609 -163148738 + L1M LINE L1 5315 5399 -934 2829 111 16 57 chr4 39179610 39180123 -163148224 + L1PA15-16 LINE L1 2081 2572 -4277 330 258 11 11 chr4 39180546 39180639 -163147708 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 314 256 22 44 chr4 39180641 39180731 -163147616 - L1MC4 LINE L1 -1341 6701 6614 35 24 0 0 chr4 39180802 39180844 -163147503 + AT_rich Low_complexity Low_complexity 1 42 0 578 269 108 17 chr4 39180885 39181326 -163147021 + L1MC/D LINE L1 5276 5761 -534 468 175 0 0 chr4 39182546 39182626 -163145721 + MADE1 DNA Mariner 1 80 0 217 371 95 0 chr4 39182948 39183064 -163145283 + L2 LINE L2 3146 3272 0 3875 36 0 2 chr4 39184377 39184848 -163143499 + L1PA4 LINE L1 5682 6151 -4 845 275 92 61 chr4 39185305 39185698 -163142649 + MLT1K LTR MaLR 165 569 -19 741 237 138 22 chr4 39186077 39186301 -163142046 - MIR SINE MIR -4 258 9 1536 154 4 0 chr4 39187291 39187550 -163140797 - L1MA5A LINE L1 -8 6289 6030 676 309 71 30 chr4 39187788 39188138 -163140209 + L2 LINE L2 2707 3078 -235 4030 116 26 3 chr4 39188138 39188759 -163139588 - MER41B LTR ERV1 0 635 1 676 309 71 30 chr4 39188759 39188854 -163139493 + L2 LINE L2 3078 3168 -145 457 188 62 18 chr4 39188957 39189069 -163139278 + MER4A LTR ERV1 1 117 -547 674 162 8 174 chr4 39189146 39189480 -163138867 + LTR34 LTR ERV1 136 260 -205 552 251 33 63 chr4 39189453 39189730 -163138617 + MER4C LTR ERV1 273 465 0 * 2209 85 3 26 chr4 39189745 39190080 -163138267 - AluSc SINE Alu 0 309 1 255 61 0 0 chr4 39190084 39190117 -163138230 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 325 220 69 107 chr4 39190153 39190204 -163138143 + L2 LINE L2 3158 3209 -104 2973 167 24 43 chr4 39190204 39190827 -163137520 - LTR9 LTR ERV1 0 612 2 325 220 69 107 chr4 39190827 39190934 -163137413 + L2 LINE L2 3209 3310 -3 316 240 70 30 chr4 39190939 39191039 -163137308 + MLT1J LTR MaLR 80 183 -328 271 311 71 49 chr4 39191370 39191553 -163136794 - L2 LINE L2 -831 2483 2297 2008 104 4 0 chr4 39192711 39192979 -163135368 + AluSg SINE Alu 1 269 -41 396 0 0 0 chr4 39192986 39193030 -163135317 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 23 54 0 0 chr4 39193418 39193455 -163134892 + AT_rich Low_complexity Low_complexity 1 37 0 478 282 46 24 chr4 39194231 39194429 -163133918 + MIR SINE MIR 6 208 -54 188 264 161 11 chr4 39195078 39195165 -163133182 - MIR SINE MIR -151 111 12 237 284 149 14 chr4 39196018 39196159 -163132188 - L2 LINE L2 -5 3267 3108 22 0 0 0 chr4 39196378 39196400 -163131947 + AT_rich Low_complexity Low_complexity 1 22 0 186 225 25 0 chr4 39196405 39196445 -163131902 - MIR SINE MIR -211 51 11 719 128 0 0 chr4 39196451 39196560 -163131787 + MER30B DNA MER1_type 1 109 -81 402 332 69 40 chr4 39196564 39196950 -163131397 - L2 LINE L2 -176 3137 2731 904 226 65 36 chr4 39196970 39197218 -163131129 - MIR SINE MIR 0 262 8 195 306 47 24 chr4 39197144 39197229 -163131118 + MIR SINE MIR 7 93 -169 * 199 184 0 0 chr4 39197987 39198025 -163130322 - MIR SINE MIR -3 259 222 * 260 211 203 65 chr4 39197991 39198114 -163130233 - L2 LINE L2 -13 3300 3161 835 281 111 47 chr4 39198619 39199106 -163129241 + LTR33A LTR ERVL 6 523 0 210 366 37 0 chr4 39199150 39199232 -163129115 + MIR SINE MIR 45 129 -79 544 300 77 14 chr4 39199451 39199671 -163128676 - MIR SINE MIR -25 237 4 214 167 0 0 chr4 39200198 39200234 -163128113 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 755 303 103 39 chr4 39200898 39201432 -163126915 + L1MCc LINE L1 23 590 -5833 430 230 137 14 chr4 39201437 39201576 -163126771 + MLT1A2 LTR MaLR 219 374 0 832 202 30 25 chr4 39201579 39201782 -163126565 - L1M4 LINE L1 -1099 5047 4844 2197 218 82 0 chr4 39201938 39202416 -163125931 + LTR53 LTR ERVL 2 518 -1 431 217 68 75 chr4 39204077 39204238 -163124109 + LTR50 LTR ERVL 8 167 -628 2190 110 3 10 chr4 39204253 39204562 -163123785 + AluSx SINE Alu 1 307 -5 365 232 36 9 chr4 39204863 39204975 -163123372 + LTR33A LTR ERVL 409 523 0 2337 97 0 6 chr4 39205646 39205957 -163122390 + AluSp SINE Alu 1 309 -4 29 0 0 0 chr4 39207135 39207164 -163121183 + AT_rich Low_complexity Low_complexity 1 29 0 205 400 136 7 chr4 39207439 39207594 -163120753 - L2 LINE L2 -3 3269 3095 1370 226 31 65 chr4 39207681 39208160 -163120187 + MLT1C LTR MaLR 1 463 -4 211 274 16 0 chr4 39208359 39208421 -163119926 + GA-rich Low_complexity Low_complexity 1 63 0 195 100 0 0 chr4 39208933 39208963 -163119384 + (TG)n Simple_repeat Simple_repeat 2 31 0 1502 154 138 0 chr4 39208993 39209253 -163119094 + AluSx SINE Alu 1 296 -16 2216 173 33 81 chr4 39209422 39209579 -163118768 - L1MA10 LINE L1 -1 6333 6170 2712 19 0 10 chr4 39209579 39209892 -163118455 - AluY SINE Alu -1 310 1 2216 173 33 81 chr4 39209892 39210279 -163118068 - L1MA10 LINE L1 -164 6170 5815 234 98 87 65 chr4 39210332 39210424 -163117923 + (TTTA)n Simple_repeat Simple_repeat 3 96 0 241 277 0 0 chr4 39210427 39210492 -163117855 + MER63 DNA MER1_type 686 750 -312 323 246 98 20 chr4 39210556 39210701 -163117646 - MIR SINE MIR -63 145 19 2591 99 8 5 chr4 39210841 39211216 -163117131 + L1PB1 LINE L1 5776 6151 0 218 191 44 0 chr4 39211219 39211287 -163117060 + A-rich Low_complexity Low_complexity 1 71 0 32 26 0 0 chr4 39211617 39211656 -163116691 + AT_rich Low_complexity Low_complexity 1 39 0 467 315 35 7 chr4 39213069 39213212 -163115135 + MIR SINE MIR 2 148 -114 2126 182 29 9 chr4 39213217 39213662 -163114685 + L1MA4 LINE L1 5845 6298 -2 186 379 16 0 chr4 39213684 39213808 -163114539 + MIR SINE MIR 137 262 0 547 231 8 0 chr4 39213863 39213980 -163114367 + MER45A DNA AcHobo 60 177 -1 2197 100 0 0 chr4 39214926 39215289 -163113058 - AluSc SINE Alu 0 363 1 1216 203 24 117 chr4 39215518 39215849 -163112498 - MLT1B LTR MaLR -10 380 94 2161 119 3 13 chr4 39215849 39216161 -163112186 + AluSc SINE Alu 1 309 0 1216 203 24 117 chr4 39216161 39216248 -163112099 - MLT1B LTR MaLR -296 94 1 239 263 18 0 chr4 39216419 39216476 -163111871 - L2 LINE L2 0 3272 3215 551 284 106 40 chr4 39217199 39217548 -163110799 + LTR16A1 LTR ERVL 1 372 -85 25 0 0 0 chr4 39217982 39218007 -163110340 + AT_rich Low_complexity Low_complexity 1 25 0 232 203 94 0 chr4 39219201 39219265 -163109082 - MARNA DNA Mariner -11 575 506 1705 39 0 14 chr4 39219459 39219666 -163108681 + AluY SINE Alu 92 295 -16 367 275 7 49 chr4 39219935 39220077 -163108270 - L1ME LINE L1 -394 5837 5702 393 284 88 15 chr4 39220140 39220344 -163108003 - L1ME LINE L1 -531 5704 5486 374 299 14 54 chr4 39220414 39220692 -163107655 + L1MEc LINE L1 1401 1667 -4729 2130 274 92 48 chr4 39221014 39222465 -163105882 - L1ME LINE L1 -1748 4467 2922 5684 116 66 5 chr4 39222465 39224063 -163104284 - L1PA13 LINE L1 0 6163 4519 2130 274 92 48 chr4 39224063 39224394 -163103953 - L1ME LINE L1 -3293 2922 2607 334 259 108 8 chr4 39224470 39224729 -163103618 - L1ME LINE L1 -3992 2404 2120 3295 253 76 43 chr4 39224850 39225356 -163102991 - L1MEc LINE L1 -1602 4613 4125 270 0 0 0 chr4 39225356 39225386 -163102961 + (GTTTG)n Simple_repeat Simple_repeat 1 30 0 3295 253 76 43 chr4 39225386 39226241 -163102106 - L1MEc LINE L1 -2090 4125 3190 1468 160 44 7 chr4 39226241 39226516 -163101831 - L1PA16 LINE L1 -9 6157 5873 3295 253 76 43 chr4 39226516 39226753 -163101594 - L1MEc LINE L1 -3025 3190 2962 666 231 55 48 chr4 39226758 39227098 -163101249 - L1MEc LINE L1 -3766 2461 2146 230 245 75 19 chr4 39227231 39227337 -163101010 - L1M4 LINE L1 -3034 3112 3001 3215 189 21 20 chr4 39227433 39228351 -163099996 + L1M1 LINE L1 4684 5609 -694 * 17469 166 32 7 chr4 39228346 39231333 -163097014 + L1MA3 LINE L1 12 3071 -4494 2741 98 31 0 chr4 39231354 39231741 -163096606 - MLT2A1 LTR ERVL -45 399 1 2944 148 37 31 chr4 39231741 39232613 -163095734 + L1MA3 LINE L1 3069 3952 -3613 356 94 0 0 chr4 39232613 39232666 -163095681 - MADE1 DNA Mariner -27 53 1 3642 171 16 72 chr4 39232671 39233078 -163095269 + L1MA3 LINE L1 5588 6016 -1670 234 0 0 0 chr4 39233078 39233104 -163095243 + (TTA)n Simple_repeat Simple_repeat 3 28 0 15663 70 7 0 chr4 39233104 39235950 -163092397 - L1PA6 LINE L1 -18 6136 3275 3642 171 16 72 chr4 39235950 39236986 -163091361 + L1MA3 LINE L1 6014 6943 -743 1051 118 24 0 chr4 39237008 39237177 -163091170 - L1MA3 LINE L1 0 6305 6133 4651 136 8 6 chr4 39237177 39237953 -163090394 + L1MA3 LINE L1 6947 7724 0 1041 235 116 78 chr4 39237993 39238841 -163089506 - L1MC4a LINE L1 -1346 6462 5583 1149 211 5 0 chr4 39238943 39239152 -163089195 - MER2 DNA MER2_type -135 210 1 693 287 23 11 chr4 39239159 39239420 -163088927 - L1MC4a LINE L1 -2230 5578 5315 520 315 53 50 chr4 39239426 39239953 -163088394 - L1MC4a LINE L1 -888 5258 4736 303 212 141 20 chr4 39240824 39240923 -163087424 - MLT1K LTR MaLR 0 588 478 406 267 111 47 chr4 39240955 39241127 -163087220 - MLT1K LTR MaLR -196 392 210 24 32 0 0 chr4 39242255 39242286 -163086061 + AT_rich Low_complexity Low_complexity 1 31 0 220 304 22 22 chr4 39242660 39242752 -163085595 - MIR SINE MIR -47 215 124 511 357 15 0 chr4 39243704 39243900 -163084447 + MIR SINE MIR 48 246 -16 1780 137 32 7 chr4 39244392 39244669 -163083678 + AluSx SINE Alu 1 284 -28 306 371 16 21 chr4 39244850 39245036 -163083311 + L2 LINE L2 3125 3309 -4 2358 84 3 0 chr4 39245245 39245555 -163082792 + AluY SINE Alu 1 311 0 252 103 0 0 chr4 39245662 39245701 -163082646 - MADE1 DNA Mariner -41 39 1 22 35 0 0 chr4 39245866 39245895 -163082452 + AT_rich Low_complexity Low_complexity 1 29 0 2443 189 37 2 chr4 39246107 39246595 -163081752 - LTR22 LTR ERVK -4 505 1 5916 200 29 10 chr4 39246672 39248190 -163080157 + L1P4 LINE L1 3947 5501 -665 2311 173 2 18 chr4 39248193 39248586 -163079761 + Ricksha DNA DNA 334 720 -2526 3064 185 5 10 chr4 39248588 39249177 -163079170 + Ricksha DNA DNA 2274 3214 -13 261 178 0 0 chr4 39249179 39249224 -163079123 - L1MA9 LINE L1 -322 5990 5946 27 0 0 0 chr4 39249806 39249833 -163078514 + AT_rich Low_complexity Low_complexity 1 27 0 186 327 19 39 chr4 39250386 39250490 -163077857 + MIR SINE MIR 5 106 -156 1225 224 81 48 chr4 39251039 39251459 -163076888 + LTR47B LTR ERVL 3 436 -7 814 293 39 4 chr4 39251652 39251884 -163076463 + MIR SINE MIR 23 262 0 21 36 0 0 chr4 39252213 39252241 -163076106 + AT_rich Low_complexity Low_complexity 1 28 0 3838 289 43 29 chr4 39253258 39254868 -163073479 + L1PBa LINE L1 7 1640 -5223 * 5485 179 31 18 chr4 39254838 39256143 -163072204 + L1PB3 LINE L1 653 1975 -4875 665 164 0 0 chr4 39256152 39256262 -163072085 - MSTA LTR MaLR -318 110 1 234 114 0 0 chr4 39256262 39256297 -163072050 + L1PB3 LINE L1 2604 2638 -4211 * 11250 205 31 12 chr4 39256287 39257248 -163071099 + L1PB3 LINE L1 3002 3943 -2914 2093 126 51 28 chr4 39257248 39257604 -163070743 + THE1B LTR MaLR 1 364 0 11250 205 31 12 chr4 39257604 39260419 -163067928 + L1PB3 LINE L1 3943 6850 -7 22 0 0 0 chr4 39260859 39260881 -163067466 + AT_rich Low_complexity Low_complexity 1 22 0 575 241 186 8 chr4 39261281 39261517 -163066830 - LTR16A1 LTR ERVL -2 455 178 216 97 0 0 chr4 39261551 39261582 -163066765 + (GA)n Simple_repeat Simple_repeat 1 31 0 253 139 0 0 chr4 39261612 39261648 -163066699 - LTR16A1 LTR ERVL -421 36 1 2074 96 20 27 chr4 39262065 39262366 -163065981 + AluY SINE Alu 1 299 -12 1803 168 0 3 chr4 39263430 39263722 -163064625 + AluSx SINE Alu 1 291 -21 23 54 0 0 chr4 39264108 39264145 -163064202 + AT_rich Low_complexity Low_complexity 1 37 0 249 33 0 0 chr4 39265106 39265136 -163063211 + (A)n Simple_repeat Simple_repeat 1 30 0 1259 211 33 0 chr4 39265262 39265561 -163062786 - MER33 DNA MER1_type -14 310 2 315 49 0 0 chr4 39265699 39265740 -163062607 + (CA)n Simple_repeat Simple_repeat 2 42 0 41 0 0 0 chr4 39266423 39266464 -163061883 + AT_rich Low_complexity Low_complexity 1 41 0 2574 61 0 0 chr4 39267256 39267566 -163060781 + AluY SINE Alu 2 311 0 201 152 0 0 chr4 39268474 39268507 -163059840 + (CA)n Simple_repeat Simple_repeat 2 34 0 407 298 94 21 chr4 39268906 39269097 -163059250 + L3 LINE CR1 1209 1413 -164 5415 66 18 8 chr4 39269208 39269931 -163058416 - HERVE LTR ERV1 -5904 992 263 691 93 0 46 chr4 39269924 39270032 -163058315 - HERVE LTR ERV1 -7428 385 283 * 1506 207 0 0 chr4 39270032 39270362 -163057985 - AluY SINE Alu 0 332 3 1400 220 3 14 chr4 39270364 39270660 -163057687 - HERVE LTR ERV1 -6603 293 1 2300 56 0 7 chr4 39271431 39271716 -163056631 + AluYb8 SINE Alu 23 305 -13 579 103 23 0 chr4 39272738 39272825 -163055522 + L1PA16 LINE L1 6067 6155 -11 24 0 0 0 chr4 39273477 39273501 -163054846 + AT_rich Low_complexity Low_complexity 1 24 0 351 227 21 62 chr4 39273588 39273685 -163054662 - MIR SINE MIR -71 137 45 323 317 42 8 chr4 39274415 39274535 -163053812 + MIR SINE MIR 28 151 -111 277 347 0 0 chr4 39274726 39274801 -163053546 + MIR3 SINE MIR 111 185 -23 2485 180 11 125 chr4 39276977 39277617 -163050730 - MER70B LTR ERVL 0 578 12 23 68 0 0 chr4 39277677 39277721 -163050626 + AT_rich Low_complexity Low_complexity 1 44 0 242 301 97 35 chr4 39278344 39278457 -163049890 + MIR SINE MIR 13 132 -130 370 259 26 26 chr4 39278522 39278638 -163049709 + L1ME LINE L1 5542 5657 -513 562 287 27 37 chr4 39278701 39278889 -163049458 - MER117 DNA MER1_type -7 190 5 258 297 121 15 chr4 39280366 39280508 -163047839 - MIR SINE MIR -62 146 17 599 283 113 13 chr4 39280608 39280838 -163047509 + MIR SINE MIR 9 261 -1 206 298 42 52 chr4 39281299 39281490 -163046857 - L2 LINE L2 -1059 2255 2067 322 337 91 36 chr4 39281873 39282125 -163046222 + L1ME LINE L1 5321 5586 -576 23 0 0 0 chr4 39282537 39282560 -163045787 + AT_rich Low_complexity Low_complexity 1 23 0 203 393 17 8 chr4 39282569 39282686 -163045661 - L3b LINE CR1 -337 1246 1129 258 164 0 0 chr4 39282755 39282810 -163045537 + (ATG)n Simple_repeat Simple_repeat 2 56 0 325 300 173 0 chr4 39282929 39283079 -163045268 + MIR SINE MIR 68 243 -19 342 115 0 0 chr4 39283750 39283802 -163044545 + (TG)n Simple_repeat Simple_repeat 1 52 0 * 380 20 20 0 chr4 39283801 39283850 -163044497 + (GA)n Simple_repeat Simple_repeat 1 50 0 1925 168 77 35 chr4 39283850 39284255 -163044092 + MSTA LTR MaLR 6 427 -1 363 96 0 0 chr4 39284255 39284307 -163044040 + (TG)n Simple_repeat Simple_repeat 1 52 0 1743 136 59 59 chr4 39284500 39284875 -163043472 - THE1C LTR MaLR 0 375 1 353 290 61 38 chr4 39284883 39285014 -163043333 + MIR SINE MIR 59 192 -70 360 250 116 27 chr4 39286055 39286167 -163042180 + L2 LINE L2 3187 3308 -5 2128 106 72 58 chr4 39286360 39286719 -163041628 + THE1B LTR MaLR 1 364 0 276 114 0 0 chr4 39287084 39287128 -163041219 - L1 LINE L1 -1323 4823 4780 2252 92 38 14 chr4 39287129 39287497 -163040850 + L1MA1 LINE L1 5926 6302 0 346 253 0 48 chr4 39288129 39288212 -163040135 + MIR SINE MIR 163 241 -21 291 298 37 81 chr4 39289133 39289294 -163039053 + L2 LINE L2 2946 3099 -173 1924 154 11 60 chr4 39289304 39289538 -163038809 - MER7A DNA MER2_type -2694 344 100 2053 131 54 23 chr4 39289538 39289889 -163038458 + THE1B LTR MaLR 3 364 0 11564 102 3 0 chr4 39289889 39291460 -163036887 + THE1B-int LTR MaLR 1 1576 -4 1846 130 73 45 chr4 39291470 39291824 -163036523 + THE1B LTR MaLR 1 364 0 1924 154 11 60 chr4 39291824 39291941 -163036406 - MER7A DNA MER2_type -2946 92 1 1618 140 3 107 chr4 39292509 39292845 -163035502 - MER50 LTR ERV1 0 734 434 1221 167 62 4 chr4 39292829 39293000 -163035347 - MER50 LTR ERV1 -494 240 51 * 354 91 0 0 chr4 39293000 39293055 -163035292 + (TG)n Simple_repeat Simple_repeat 1 55 0 1221 167 62 4 chr4 39293055 39293110 -163035237 - MER50 LTR ERV1 -683 51 1 1651 197 37 20 chr4 39293242 39293598 -163034749 + MLT1A1 LTR MaLR 1 465 -2 258 262 75 37 chr4 39293634 39293741 -163034606 + MLT1J LTR MaLR 243 353 -158 286 279 0 13 chr4 39293893 39293972 -163034375 - MLT1I LTR MaLR -10 399 322 341 265 143 7 chr4 39294132 39294279 -163034068 - MLT1I LTR MaLR -238 171 5 5369 126 21 19 chr4 39294338 39295415 -163032932 + L1PA15 LINE L1 4585 5674 -491 2318 52 42 0 chr4 39295415 39295701 -163032646 + AluY SINE Alu 1 298 -13 5369 126 21 19 chr4 39295701 39296190 -163032157 + L1PA15 LINE L1 5674 6160 -5 183 42 0 0 chr4 39296233 39296257 -163032090 + (A)n Simple_repeat Simple_repeat 1 24 0 279 259 85 22 chr4 39296924 39297059 -163031288 + MIR SINE MIR 51 183 -45 180 333 0 0 chr4 39297733 39297784 -163030563 - MIR SINE MIR -2 260 210 4238 147 14 0 chr4 39297798 39298499 -163029848 - Ricksha DNA DNA -30 3216 2506 325 167 0 0 chr4 39298508 39298568 -163029779 - Ricksha DNA DNA -1735 311 252 556 130 0 0 chr4 39298575 39298667 -163029680 - Ricksha DNA DNA -3146 100 9 379 306 71 18 chr4 39298667 39298837 -163029510 - MIR SINE MIR -36 226 48 740 294 86 53 chr4 39300898 39301305 -163027042 + MLT1J LTR MaLR 36 425 -21 811 0 20 0 chr4 39301886 39301985 -163026362 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 403 327 93 30 chr4 39302411 39302711 -163025636 - L2 LINE L2 -713 2601 2283 722 244 17 28 chr4 39302712 39302892 -163025455 + MER63A DNA MER1_type 3 180 -30 238 248 18 80 chr4 39302999 39303112 -163025235 - L1ME LINE L1 -3385 2695 2590 410 300 146 4 chr4 39303278 39303531 -163024816 - L1ME LINE L1 -3712 2368 2080 315 265 173 12 chr4 39303531 39303693 -163024654 - LTR41 LTR ERVL -2 771 584 4090 184 27 0 chr4 39303940 39304464 -163023883 + MER44D DNA MER2_type 2 423 -2064 2339 101 48 25 chr4 39304464 39304820 -163023527 + THE1B LTR MaLR 1 364 0 4090 184 27 0 chr4 39304820 39305006 -163023341 + MER44D DNA MER2_type 423 603 -2 972 294 27 61 chr4 39305009 39305451 -163022896 - ERVL LTR ERVL -387 5377 4951 * 3020 256 39 25 chr4 39305449 39306238 -163022109 - ERVL LTR ERVL -1284 4480 3676 2281 101 0 3 chr4 39306238 39306544 -163021803 - AluSq SINE Alu -8 305 1 3020 256 39 25 chr4 39306544 39306625 -163021722 - ERVL LTR ERVL -2088 3676 3598 362 316 38 48 chr4 39306722 39307013 -163021334 - L1ME LINE L1 -5174 896 609 1329 291 69 12 chr4 39307352 39307844 -163020503 + LTR33 LTR ERVL 2 521 0 261 283 28 9 chr4 39308114 39308220 -163020127 - L1ME3A LINE L1 -246 5924 5817 246 42 62 0 chr4 39308590 39308638 -163019709 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr4 39309465 39309486 -163018861 + AT_rich Low_complexity Low_complexity 1 21 0 2139 141 0 3 chr4 39310102 39310414 -163017933 + AluSq SINE Alu 1 311 -2 21 36 0 0 chr4 39310456 39310484 -163017863 + AT_rich Low_complexity Low_complexity 1 28 0 649 318 86 21 chr4 39310553 39311082 -163017265 + L1ME4a LINE L1 5259 5836 -285 302 222 0 25 chr4 39311144 39311225 -163017122 + L1ME4a LINE L1 6040 6118 -3 183 284 15 30 chr4 39311301 39311368 -163016979 + L2 LINE L2 352 417 -2897 192 367 163 0 chr4 39312305 39312403 -163015944 + L2 LINE L2 3140 3253 -19 298 282 14 0 chr4 39314084 39314155 -163014192 - L2 LINE L2 -47 3266 3195 544 265 20 20 chr4 39314301 39314452 -163013895 + MIR SINE MIR 2 152 -110 2157 121 3 0 chr4 39314738 39315036 -163013311 + AluSp SINE Alu 1 299 -14 2406 184 9 19 chr4 39315129 39315559 -163012788 - MSTC LTR MaLR -2 426 1 23 33 0 0 chr4 39315697 39315727 -163012620 + AT_rich Low_complexity Low_complexity 1 30 0 859 273 80 33 chr4 39315727 39316064 -163012283 - HAL1 LINE L1 -1659 848 496 1482 212 123 64 chr4 39316100 39316694 -163011653 + MLT1E2 LTR MaLR 3 626 0 2283 124 30 25 chr4 39316734 39317096 -163011251 - THE1B LTR MaLR 0 364 1 562 277 52 69 chr4 39317136 39317360 -163010987 - HAL1 LINE L1 -2116 391 174 1833 186 37 8 chr4 39317360 39317715 -163010632 + MLT1A1 LTR MaLR 1 365 0 562 277 52 69 chr4 39317715 39317837 -163010510 - HAL1 LINE L1 -2333 174 51 609 164 36 0 chr4 39318351 39318461 -163009886 + MER3 DNA MER1_type 49 162 -47 1250 192 62 19 chr4 39318464 39318833 -163009514 + MER3 DNA MER1_type 2234 2618 0 2242 96 7 3 chr4 39319522 39319815 -163008532 + AluSq SINE Alu 1 294 -19 196 269 169 50 chr4 39320170 39320330 -163008017 - L2 LINE L2 -1038 2276 2098 553 272 73 39 chr4 39320986 39321218 -163007129 - MLT1I LTR MaLR -7 402 163 1113 319 110 34 chr4 39321446 39322185 -163006162 - ERVL LTR ERVL -2270 2726 1851 2306 151 8 60 chr4 39322185 39322614 -163005733 - MER65A LTR ERV1 0 445 40 198 0 0 0 chr4 39322614 39322636 -163005711 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2306 151 8 60 chr4 39322636 39322675 -163005672 - MER65A LTR ERV1 -405 40 1 1113 319 110 34 chr4 39322675 39322942 -163005405 - ERVL LTR ERVL -3145 1851 1606 216 0 0 0 chr4 39323214 39323238 -163005109 + (T)n Simple_repeat Simple_repeat 1 24 0 310 314 10 0 chr4 39323261 39323363 -163004984 - ERVL LTR ERVL -3784 1212 1110 793 222 11 21 chr4 39323453 39323642 -163004705 - MER5A DNA MER1_type -1 188 2 1703 166 43 6 chr4 39323844 39323945 -163004402 + MER44D DNA MER2_type 2 98 -2393 365 39 20 0 chr4 39323945 39323996 -163004351 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 1703 166 43 6 chr4 39323996 39324220 -163004127 + MER44D DNA MER2_type 98 609 0 21 0 0 0 chr4 39324480 39324501 -163003846 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 39326084 39326107 -163002240 + AT_rich Low_complexity Low_complexity 1 23 0 329 317 156 18 chr4 39326306 39326473 -163001874 - MIR SINE MIR -24 238 49 2672 99 19 0 chr4 39326850 39327224 -163001123 - L1PA10 LINE L1 -4 6164 5784 349 286 67 39 chr4 39327506 39327684 -163000663 + L3 LINE CR1 749 931 -646 182 289 0 0 chr4 39327764 39327809 -163000538 - L2 LINE L2 0 3313 3269 563 306 69 25 chr4 39327813 39328058 -163000289 + MIR SINE MIR 7 262 0 30 27 0 0 chr4 39328062 39328099 -163000248 + AT_rich Low_complexity Low_complexity 1 37 0 863 331 90 44 chr4 39328102 39328470 -162999877 + L2 LINE L2 2197 2547 -766 2334 128 43 0 chr4 39328470 39328821 -162999526 - MER47A DNA MER2_type 0 366 1 863 331 90 44 chr4 39328821 39329514 -162998833 + L2 LINE L2 2547 3313 0 392 333 50 81 chr4 39329521 39330221 -162998126 - L2 LINE L2 -234 3038 2301 262 355 59 21 chr4 39330635 39330821 -162997526 - L2 LINE L2 -1424 1890 1698 339 346 43 25 chr4 39331031 39331193 -162997154 + L3 LINE CR1 1410 1574 -3 28 0 0 0 chr4 39331492 39331520 -162996827 + AT_rich Low_complexity Low_complexity 1 28 0 2137 125 7 0 chr4 39331617 39331913 -162996434 + AluSx SINE Alu 1 298 -14 23 33 0 0 chr4 39332654 39332684 -162995663 + AT_rich Low_complexity Low_complexity 1 30 0 2053 146 60 3 chr4 39332689 39333058 -162995289 + MLT1B LTR MaLR 1 390 0 795 239 34 6 chr4 39333103 39333279 -162995068 - MER5A DNA MER1_type -8 181 1 534 214 45 0 chr4 39333505 39333617 -162994730 - MER63 DNA MER1_type -319 743 1 2150 113 0 0 chr4 39333672 39333954 -162994393 + AluSx SINE Alu 1 282 -30 23 0 0 0 chr4 39334098 39334121 -162994226 + AT_rich Low_complexity Low_complexity 1 23 0 414 313 15 8 chr4 39334799 39334930 -162993417 - L2 LINE L2 0 3313 3182 200 303 22 0 chr4 39335008 39335097 -162993250 + (TA)n Simple_repeat Simple_repeat 2 92 0 489 146 13 26 chr4 39335129 39335280 -162993067 + (TA)n Simple_repeat Simple_repeat 1 149 0 270 176 0 0 chr4 39335369 39335420 -162992927 + (TA)n Simple_repeat Simple_repeat 1 51 0 386 181 0 28 chr4 39335505 39335649 -162992698 + (TA)n Simple_repeat Simple_repeat 2 141 0 1849 209 92 16 chr4 39336104 39336528 -162991819 + MER74B LTR ERVL 46 501 -121 239 121 0 0 chr4 39336528 39336561 -162991786 - MLT2B1 LTR ERVL 0 520 488 2005 110 16 50 chr4 39336561 39337002 -162991345 - MER51B LTR ERV1 0 377 3 2111 179 55 21 chr4 39337014 39337434 -162990913 - MLT2B1 LTR ERVL -80 440 7 511 170 62 18 chr4 39337448 39337560 -162990787 + MER74B LTR ERVL 506 622 0 356 244 76 30 chr4 39338009 39338140 -162990207 - MIR SINE MIR -33 229 93 261 295 27 27 chr4 39338442 39338554 -162989793 - MLT1L LTR MaLR -143 472 361 195 315 250 0 chr4 39338859 39338967 -162989380 + L2 LINE L2 3136 3270 -2 180 0 0 0 chr4 39338992 39339012 -162989335 + (TTG)n Simple_repeat Simple_repeat 2 21 0 279 0 0 0 chr4 39339215 39339246 -162989101 + (CA)n Simple_repeat Simple_repeat 2 32 0 584 292 36 43 chr4 39340208 39340637 -162987710 + LTR33 LTR ERVL 43 502 -19 22 0 0 0 chr4 39341375 39341397 -162986950 + AT_rich Low_complexity Low_complexity 1 22 0 196 369 12 12 chr4 39341411 39341495 -162986852 + MIR3 SINE MIR 75 158 -50 22 56 0 0 chr4 39341599 39341635 -162986712 + AT_rich Low_complexity Low_complexity 1 36 0 2125 132 0 3 chr4 39341678 39341981 -162986366 - AluSg SINE Alu -8 302 1 868 170 88 0 chr4 39342211 39342308 -162986039 - L1MA9 LINE L1 -422 5890 5803 213 94 0 0 chr4 39342308 39342340 -162986007 + (TG)n Simple_repeat Simple_repeat 2 33 0 868 170 88 0 chr4 39342340 39342413 -162985934 - L1MA9 LINE L1 -509 5803 5705 2189 140 36 0 chr4 39342416 39342801 -162985546 + L1MA9 LINE L1 5912 6310 -2 348 253 120 51 chr4 39342847 39343005 -162985342 + L1ME3 LINE L1 5269 5437 -725 348 364 70 17 chr4 39343022 39343324 -162985023 + L1ME3 LINE L1 5629 5946 -216 10209 208 59 22 chr4 39343332 39347159 -162981188 + L1MA1 LINE L1 15 4316 -3249 2108 143 41 14 chr4 39347159 39347524 -162980823 - THE1C LTR MaLR 0 375 1 9366 140 43 10 chr4 39347533 39349051 -162979296 - THE1C-int LTR MaLR -11 1569 1 2111 133 68 6 chr4 39349051 39349404 -162978943 - THE1C LTR MaLR 0 375 1 12071 154 20 13 chr4 39349405 39352754 -162975593 + L1MA1 LINE L1 4313 7692 -29 31 44 0 0 chr4 39353424 39353469 -162974878 + AT_rich Low_complexity Low_complexity 1 45 0 370 284 74 65 chr4 39353492 39353707 -162974640 - L1M4 LINE L1 -1197 4949 4733 261 303 184 13 chr4 39353719 39353871 -162974476 + MER5B DNA MER1_type 1 178 0 214 355 97 32 chr4 39354920 39355075 -162973272 + MIR SINE MIR 50 214 -48 567 211 67 62 chr4 39355119 39355327 -162973020 - MER112 DNA MER1_type -50 210 2 421 277 220 0 chr4 39356014 39356155 -162972192 + MIR SINE MIR 87 258 -4 337 229 99 104 chr4 39356155 39356356 -162971991 - LTR16A LTR ERVL 0 450 251 294 306 24 24 chr4 39356374 39356498 -162971849 - LTR16A1 LTR ERVL -311 146 23 288 384 60 0 chr4 39356678 39356863 -162971484 - HERVL LTR ERVL -648 5006 4811 819 299 47 58 chr4 39356864 39357312 -162971035 - HERVL LTR ERVL -852 4912 4470 393 340 84 20 chr4 39357378 39357515 -162970832 + MLT1K LTR MaLR 366 522 -66 1032 214 182 38 chr4 39357515 39357861 -162970486 - MSTD LTR MaLR 0 396 1 393 340 84 20 chr4 39357861 39357926 -162970421 + MLT1K LTR MaLR 522 581 -7 2237 86 3 17 chr4 39357959 39358260 -162970087 - AluY SINE Alu -14 297 1 352 337 51 20 chr4 39358510 39358706 -162969641 - MIR SINE MIR -8 254 53 1853 115 67 7 chr4 39358749 39359042 -162969305 - AluSx SINE Alu 0 309 1 2080 176 8 6 chr4 39359316 39359680 -162968667 - MLT1A1 LTR MaLR 0 365 1 303 229 180 25 chr4 39359681 39359803 -162968544 - MIR SINE MIR -114 148 8 2119 102 7 3 chr4 39359834 39360129 -162968218 + AluSx SINE Alu 2 297 -15 2375 65 16 3 chr4 39360131 39360438 -162967909 + AluY SINE Alu 1 311 0 237 201 5 5 chr4 39360445 39360504 -162967843 - MIR SINE MIR -78 130 71 2287 179 19 9 chr4 39361778 39362197 -162966150 - MER95 LTR ERV 0 431 9 243 103 0 0 chr4 39363138 39363177 -162965170 + (CA)n Simple_repeat Simple_repeat 2 40 0 456 284 71 22 chr4 39363983 39364166 -162964181 + MIR SINE MIR 6 197 -65 763 282 62 4 chr4 39364224 39364451 -162963896 - MIR SINE MIR -21 241 2 305 214 71 65 chr4 39364926 39365080 -162963267 + MER103 DNA DNA 11 165 -1 1486 216 108 19 chr4 39365081 39365585 -162962762 + MLT2F LTR ERVL 1 595 -68 7422 255 59 20 chr4 39365836 39368449 -162959898 - L1MEc LINE L1 -1227 4988 2247 880 216 50 40 chr4 39368449 39368671 -162959676 + MER58A DNA MER1_type 1 224 0 7422 255 59 20 chr4 39368671 39369228 -162959119 - L1MEc LINE L1 -3968 2247 1713 22 0 0 0 chr4 39369228 39369250 -162959097 + AT_rich Low_complexity Low_complexity 1 22 0 319 88 18 0 chr4 39369250 39369307 -162959040 - L1PA6 LINE L1 0 6154 6097 249 286 75 25 chr4 39369388 39369549 -162958798 - L1ME LINE L1 -389 5732 5564 381 231 54 68 chr4 39369599 39369746 -162958601 - MLT1H LTR MaLR -195 354 210 2498 79 0 0 chr4 39370213 39370516 -162957831 - AluSc SINE Alu -4 305 3 221 263 40 50 chr4 39371192 39371291 -162957056 - L2 LINE L2 -2 3270 3173 579 149 70 0 chr4 39371349 39371463 -162956884 + L1MB3 LINE L1 6060 6181 -2 338 24 0 0 chr4 39371683 39371725 -162956622 + MADE1 DNA Mariner 39 80 0 323 309 227 27 chr4 39371942 39372339 -162956008 - L2 LINE L2 -1257 2057 1741 1420 211 62 3 chr4 39372339 39372661 -162955686 - MER58B DNA MER1_type 0 341 1 323 309 227 27 chr4 39372661 39372814 -162955533 - L2 LINE L2 -1573 1741 1397 473 301 8 0 chr4 39372854 39372977 -162955370 - MIR SINE MIR -37 225 102 5415 154 53 8 chr4 39372985 39374382 -162953965 + L1PA16 LINE L1 4718 6157 -9 188 386 11 11 chr4 39374395 39374483 -162953864 - MIR SINE MIR -161 101 14 413 350 22 36 chr4 39374513 39374787 -162953560 - L2 LINE L2 -1975 1339 1070 246 269 231 0 chr4 39375581 39375689 -162952658 + MER5A DNA MER1_type 56 188 -1 646 247 25 16 chr4 39376880 39377071 -162951276 - MIR SINE MIR -57 205 9 536 322 43 111 chr4 39377561 39378642 -162949705 + L2 LINE L2 1572 2575 -739 1166 184 0 40 chr4 39378642 39378870 -162949477 - MER20 DNA MER1_type 0 219 1 536 322 43 111 chr4 39378870 39378916 -162949431 + L2 LINE L2 2575 2623 -691 363 328 74 59 chr4 39379136 39379542 -162948805 + L2 LINE L2 2898 3309 -4 26 30 0 0 chr4 39381518 39381551 -162946796 + AT_rich Low_complexity Low_complexity 1 33 0 2151 109 17 0 chr4 39382082 39382405 -162945942 + AluSg SINE Alu 1 310 0 249 368 48 32 chr4 39383472 39383597 -162944750 - MIR3 SINE MIR -54 154 28 2362 164 10 16 chr4 39383738 39384123 -162944224 - LTR32 LTR ERVL 0 471 89 251 185 123 0 chr4 39384607 39384672 -162943675 - MIR SINE MIR -99 163 91 255 233 27 14 chr4 39384682 39384755 -162943592 - MLT1K LTR MaLR 0 588 515 382 261 17 67 chr4 39384825 39384944 -162943403 - MLT1K LTR MaLR -250 338 226 23 54 0 0 chr4 39385427 39385464 -162942883 + AT_rich Low_complexity Low_complexity 1 37 0 388 145 14 0 chr4 39385628 39385697 -162942650 + L1PA16 LINE L1 6088 6157 -9 1850 180 18 6 chr4 39388387 39388726 -162939621 + MER2 DNA MER2_type 2 344 0 474 237 22 7 chr4 39388939 39389078 -162939269 - L1ME4a LINE L1 -16 6105 5965 7856 10 0 0 chr4 39389199 39390458 -162937889 - L1PA2 LINE L1 -4 6151 4899 11088 31 0 0 chr4 39390458 39391794 -162936553 + L1P LINE L1 2912 4247 -1899 191 333 108 18 chr4 39391966 39392077 -162936270 - L2 LINE L2 -11 3302 3182 2003 145 0 0 chr4 39392240 39392543 -162935804 - AluSg SINE Alu -7 303 1 183 359 41 69 chr4 39392597 39392742 -162935605 - MIR3 SINE MIR -64 144 4 322 297 103 65 chr4 39392860 39393045 -162935302 - MIR3 SINE MIR -12 196 5 454 271 116 40 chr4 39393236 39393461 -162934886 - MIR SINE MIR -10 252 11 927 292 8 8 chr4 39393677 39393927 -162934420 + MIR SINE MIR 3 252 -10 406 319 58 90 chr4 39393952 39394262 -162934085 + L2 LINE L2 2924 3223 -49 198 0 0 0 chr4 39394585 39394607 -162933740 + (TAA)n Simple_repeat Simple_repeat 1 22 0 2021 194 59 30 chr4 39394761 39395252 -162933095 - MLT1D LTR MaLR 0 505 1 880 296 61 40 chr4 39395346 39395772 -162932575 + LTR16A LTR ERVL 16 450 0 2756 224 32 13 chr4 39395940 39396573 -162931774 - MER82 DNA MER2_type -2 651 7 1812 139 7 0 chr4 39397237 39397538 -162930809 - L1PA13 LINE L1 0 6163 5861 1229 200 79 41 chr4 39398126 39398416 -162929931 - AluJo SINE Alu -1 301 1 223 261 127 45 chr4 39400179 39400313 -162928034 + L2 LINE L2 975 1119 -2195 322 355 111 29 chr4 39400827 39400963 -162927384 + L1PBa LINE L1 24 148 -6715 217 0 61 0 chr4 39400963 39400996 -162927351 + (CAA)n Simple_repeat Simple_repeat 2 36 0 322 355 111 29 chr4 39400996 39401338 -162927009 + L1PBa LINE L1 148 541 -6322 * 337 367 6 6 chr4 39401309 39401486 -162926861 + L1PBa LINE L1 1429 1605 -5258 581 346 12 19 chr4 39401550 39401871 -162926476 + L1P5 LINE L1 699 1017 -5833 11810 214 34 35 chr4 39402056 39406572 -162921775 + L1P5 LINE L1 1965 6476 -383 2328 164 16 27 chr4 39406703 39407153 -162921194 + MER65A LTR ERV1 1 445 0 180 111 0 0 chr4 39407393 39407420 -162920927 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 32 57 0 0 chr4 39408192 39408245 -162920102 + AT_rich Low_complexity Low_complexity 1 53 0 202 328 57 41 chr4 39408375 39408497 -162919850 - MIR SINE MIR -3 259 136 211 391 22 0 chr4 39408929 39409021 -162919326 + L2 LINE L2 2968 3061 -252 3929 201 24 38 chr4 39409031 39410215 -162918132 - L1MB7 LINE L1 -18 6664 5505 2409 62 3 0 chr4 39410215 39410505 -162917842 - AluY SINE Alu -20 291 1 3929 201 24 38 chr4 39410505 39410539 -162917808 - L1MB7 LINE L1 -1177 5505 5472 * 5301 252 78 21 chr4 39410535 39412195 -162916152 - L1MB7 LINE L1 -3536 3108 1198 7105 65 2 4 chr4 39412195 39413510 -162914837 - L1PA8 LINE L1 0 6172 4855 5301 252 78 21 chr4 39413510 39414776 -162913571 - L1MB7 LINE L1 -5446 1198 5 261 250 164 31 chr4 39414779 39414841 -162913506 + L2 LINE L2 3037 3089 -224 183 80 0 0 chr4 39414841 39414866 -162913481 + (TA)n Simple_repeat Simple_repeat 2 26 0 261 250 164 31 chr4 39414866 39414931 -162913416 + L2 LINE L2 3089 3181 -132 275 252 90 114 chr4 39415015 39415305 -162913042 + MLT1J LTR MaLR 99 381 -130 22 35 0 0 chr4 39415600 39415629 -162912718 + AT_rich Low_complexity Low_complexity 1 29 0 1455 105 22 4 chr4 39415937 39416165 -162912182 + L1PB1 LINE L1 5920 6151 0 24 0 0 0 chr4 39416167 39416191 -162912156 + AT_rich Low_complexity Low_complexity 1 24 0 34 72 0 0 chr4 39416952 39417021 -162911326 + AT_rich Low_complexity Low_complexity 1 69 0 564 317 54 18 chr4 39417100 39417324 -162911023 - MIR SINE MIR -7 255 24 737 251 158 43 chr4 39417387 39417849 -162910498 + MER113 DNA MER1_type? 4 518 -3 300 278 113 17 chr4 39417894 39418009 -162910338 + MIR SINE MIR 98 223 -39 428 331 12 54 chr4 39418274 39418440 -162909907 + MER91A DNA MER1_type 35 193 -3 384 215 101 108 chr4 39419212 39419370 -162908977 - MIR SINE MIR -41 221 65 2244 114 0 0 chr4 39420059 39420358 -162907989 - AluSx SINE Alu -13 299 1 654 201 34 98 chr4 39421381 39421615 -162906732 + LTR12 LTR ERV1 238 456 -258 513 348 58 5 chr4 39422192 39422416 -162905931 + MIR SINE MIR 18 253 -9 211 310 20 10 chr4 39422825 39422925 -162905422 + GA-rich Low_complexity Low_complexity 5 105 0 21 0 0 0 chr4 39423242 39423263 -162905084 + AT_rich Low_complexity Low_complexity 1 21 0 393 259 25 81 chr4 39424022 39424219 -162904128 + MIR SINE MIR 2 187 -75 1454 162 85 85 chr4 39424635 39425006 -162903341 + MER67C LTR ERV1 1 398 -242 260 263 132 9 chr4 39425067 39425181 -162903166 + MER67D LTR ERV1 384 511 -3 693 185 92 56 chr4 39425521 39425716 -162902631 - L2 LINE L2 0 3313 3112 954 149 80 5 chr4 39427054 39427242 -162901105 - L1MA9 LINE L1 0 6312 6111 1210 169 42 0 chr4 39427242 39427478 -162900869 + L1MA9 LINE L1 5878 6123 -189 1739 159 7 14 chr4 39427635 39427930 -162900417 - AluJo SINE Alu -9 303 11 23 0 0 0 chr4 39428203 39428226 -162900121 + AT_rich Low_complexity Low_complexity 1 23 0 575 242 114 0 chr4 39428301 39428433 -162899914 + MLT1J1 LTR MaLR 13 159 -287 540 250 121 1 chr4 39428482 39428628 -162899719 + MLT1J2 LTR MaLR 13 172 -237 767 313 68 26 chr4 39428663 39429047 -162899300 + MLT1J1 LTR MaLR 13 412 -34 1303 219 49 31 chr4 39430646 39430999 -162897348 - MLT1A1 LTR MaLR 0 365 3 193 226 113 19 chr4 39431009 39431062 -162897285 - L3 LINE CR1 -624 953 896 2023 131 3 0 chr4 39431064 39431370 -162896977 - AluSg SINE Alu 0 307 1 237 308 58 10 chr4 39431507 39431611 -162896736 - L1MC5 LINE L1 -1134 6827 6719 455 295 266 0 chr4 39431776 39431983 -162896364 + MIR SINE MIR 1 262 0 31 26 0 0 chr4 39432297 39432335 -162896012 + AT_rich Low_complexity Low_complexity 1 38 0 2251 107 3 0 chr4 39432765 39433065 -162895282 - AluSx SINE Alu -11 301 1 281 326 51 0 chr4 39433630 39433728 -162894619 + MIR3 SINE MIR 89 191 -17 181 83 56 0 chr4 39434708 39434744 -162893603 + (TA)n Simple_repeat Simple_repeat 1 38 0 901 225 23 28 chr4 39434785 39435003 -162893344 - MER20 DNA MER1_type 0 219 3 697 296 17 17 chr4 39435029 39435075 -162893272 + MIR SINE MIR 30 75 -187 480 105 0 70 chr4 39435075 39435161 -162893186 + MADE1 DNA Mariner 1 80 0 697 296 17 17 chr4 39435161 39435347 -162893000 + MIR SINE MIR 74 262 0 285 308 31 46 chr4 39436037 39436167 -162892180 - MER5B DNA MER1_type -50 128 1 394 333 0 0 chr4 39436266 39436377 -162891970 - L2 LINE L2 0 3272 3162 2207 218 26 2 chr4 39436379 39436848 -162891499 + MER67D LTR ERV1 1 480 -34 228 233 103 69 chr4 39436934 39437050 -162891297 - MER5A DNA MER1_type -69 120 1 2202 271 80 37 chr4 39437097 39437852 -162890495 + L1MC4 LINE L1 6925 7741 -301 240 35 0 0 chr4 39437852 39437881 -162890466 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2202 271 80 37 chr4 39437881 39438197 -162890150 + L1MC4 LINE L1 7741 8042 0 2334 77 23 0 chr4 39438628 39438928 -162889419 - AluSg SINE Alu -1 309 3 243 267 23 35 chr4 39439232 39439318 -162889029 + L2 LINE L2 3158 3242 -71 247 200 17 0 chr4 39439349 39439409 -162888938 + GA-rich Low_complexity Low_complexity 1 61 0 316 309 0 0 chr4 39439517 39439611 -162888736 + L1MC4 LINE L1 6614 6707 -1335 326 368 74 13 chr4 39440062 39440293 -162888054 - L2 LINE L2 -438 2876 2632 2940 15 0 0 chr4 39440370 39440713 -162887634 - L1P LINE L1 -949 5197 4855 3000 62 0 5 chr4 39440713 39441093 -162887254 + L1PA3 LINE L1 5773 6155 0 24 0 0 0 chr4 39442464 39442488 -162885859 + AT_rich Low_complexity Low_complexity 1 24 0 333 132 0 0 chr4 39442567 39442620 -162885727 - MLT1J LTR MaLR -39 472 420 315 339 85 16 chr4 39442681 39442870 -162885477 - MLT1J LTR MaLR -309 202 1 243 323 24 24 chr4 39444359 39444404 -162883943 - MLT1G1 LTR MaLR 0 595 551 1740 189 101 90 chr4 39444404 39444917 -162883430 + MLT2B1 LTR ERVL 1 519 -1 243 323 24 24 chr4 39444917 39444998 -162883349 - MLT1G1 LTR MaLR -43 552 469 462 300 104 72 chr4 39445314 39445831 -162882516 - L2 LINE L2 -789 2525 1992 1197 239 118 20 chr4 39446933 39447288 -162881059 - MSTD LTR MaLR -6 390 1 34 42 0 0 chr4 39447512 39447560 -162880787 + AT_rich Low_complexity Low_complexity 1 48 0 3244 167 18 70 chr4 39449333 39450057 -162878290 + LTR8 LTR ERV1 6 691 0 298 340 112 15 chr4 39450064 39450261 -162878086 + MIR SINE MIR 40 255 -7 476 256 42 84 chr4 39450310 39450501 -162877846 - MER5A DNA MER1_type -1 188 6 21 0 0 0 chr4 39450558 39450579 -162877768 + AT_rich Low_complexity Low_complexity 1 21 0 1370 228 46 11 chr4 39450792 39451143 -162877204 + MER31B LTR ERV1 1 363 -103 229 220 0 0 chr4 39451170 39451220 -162877127 + MER67B LTR ERV1 612 661 0 635 201 46 118 chr4 39451541 39451804 -162876543 + MLT1A1 LTR MaLR 1 244 -121 253 342 84 40 chr4 39451912 39452050 -162876297 - MLT1K LTR MaLR -8 580 449 1750 159 9 22 chr4 39452050 39452365 -162875982 + AluSx SINE Alu 1 311 -1 253 342 84 40 chr4 39452365 39452501 -162875846 - MLT1K LTR MaLR -139 449 294 1033 182 79 8 chr4 39452685 39453124 -162875223 + MER34 LTR ERV1 25 523 -19 796 254 151 15 chr4 39453315 39453587 -162874760 + L2 LINE L2 3000 3308 -5 180 442 0 17 chr4 39454143 39454263 -162874084 + MIR SINE MIR 18 135 -73 2003 138 31 0 chr4 39454730 39455020 -162873327 - AluSx SINE Alu -13 299 1 2886 125 7 0 chr4 39455748 39456203 -162872144 + L1MA1 LINE L1 5845 6302 0 331 140 168 28 chr4 39457261 39457297 -162871050 - L1MA9 LINE L1 -1 6311 6281 192 40 0 0 chr4 39457297 39457322 -162871025 + (TG)n Simple_repeat Simple_repeat 2 26 0 331 140 168 28 chr4 39457322 39457392 -162870955 - L1MA9 LINE L1 -31 6281 6190 1281 110 0 0 chr4 39457393 39457566 -162870781 + THE1B LTR MaLR 1 173 -191 52 0 0 16 chr4 39457576 39457608 -162870739 + AT_rich Low_complexity Low_complexity 1 33 -29 199 68 0 45 chr4 39457608 39457652 -162870695 + (TTAAA)n Simple_repeat Simple_repeat 5 46 0 52 0 0 16 chr4 39457652 39457682 -162870665 + AT_rich Low_complexity Low_complexity 33 62 0 459 178 34 0 chr4 39457694 39458165 -162870182 + (TA)n Simple_repeat Simple_repeat 1 487 0 1292 107 10 0 chr4 39458167 39458364 -162869983 + THE1B-int LTR MaLR 1382 1580 0 2422 115 34 14 chr4 39458364 39458721 -162869626 + THE1B LTR MaLR 1 364 0 405 115 23 58 chr4 39458729 39458816 -162869531 - L1MA9 LINE L1 -134 6178 6095 27 29 0 0 chr4 39459360 39459394 -162868953 + AT_rich Low_complexity Low_complexity 1 34 0 257 334 0 2 chr4 39460328 39460413 -162867934 + MIR SINE MIR 42 125 -83 3780 140 28 10 chr4 39460535 39461188 -162867159 - MER39 LTR ERV1 0 707 3 185 304 36 0 chr4 39461316 39461372 -162866975 + MIR SINE MIR 47 104 -104 300 318 18 0 chr4 39462183 39462293 -162866054 + MLT1J LTR MaLR 400 511 0 249 245 0 0 chr4 39462377 39462426 -162865921 + L2 LINE L2 3212 3260 -12 1272 240 108 68 chr4 39462570 39463115 -162865232 + MLT1F1 LTR MaLR 1 567 0 612 84 0 12 chr4 39464224 39464307 -162864040 - THE1B LTR MaLR -49 315 234 8587 93 24 10 chr4 39464309 39466346 -162862001 - L1PA7 LINE L1 0 6154 4103 301 262 120 71 chr4 39467341 39467524 -162860823 + HAL1b LINE L1 746 937 -411 290 177 32 0 chr4 39467551 39467613 -162860734 - MLT1A1 LTR MaLR -10 355 292 238 299 60 26 chr4 39467600 39467717 -162860630 - MLT1A1 LTR MaLR -333 124 4 * 2411 120 66 20 chr4 39468047 39468235 -162860112 + MSTA LTR MaLR 1 179 -249 2009 92 7 28 chr4 39468235 39468518 -162859829 + AluSq SINE Alu 16 292 -21 2411 120 66 20 chr4 39468518 39468738 -162859609 + MSTA LTR MaLR 179 428 0 2338 71 0 0 chr4 39469756 39470051 -162858296 - AluY SINE Alu -16 295 1 414 309 55 25 chr4 39470330 39470531 -162857816 - MIR SINE MIR -54 208 2 362 264 0 0 chr4 39471086 39471177 -162857170 + MIR SINE MIR 169 259 -3 345 275 55 0 chr4 39471197 39471306 -162857041 - MIR SINE MIR -47 215 101 9266 102 8 4 chr4 39471313 39472595 -162855752 - HSMAR1 DNA Mariner 0 1287 1 2128 125 7 0 chr4 39472883 39473179 -162855168 - AluSq SINE Alu -15 298 1 308 227 159 101 chr4 39473318 39473595 -162854752 - L2 LINE L2 0 3313 3021 239 308 13 0 chr4 39474244 39474322 -162854025 - MLT1L LTR MaLR -536 79 1 1055 119 0 0 chr4 39476998 39477149 -162851198 + AluSp/q SINE Alu 163 313 0 435 374 75 10 chr4 39477179 39477591 -162850756 + LTR16A LTR ERVL 9 447 -3 436 298 31 37 chr4 39477665 39477826 -162850521 + LTR16A LTR ERVL 147 306 -144 211 346 58 50 chr4 39478074 39478228 -162850119 + L2 LINE L2 2812 2970 -302 1885 192 14 27 chr4 39478228 39478598 -162849749 - MLT1A1 LTR MaLR 0 365 1 211 346 58 50 chr4 39478598 39478683 -162849664 + L2 LINE L2 2970 3053 -219 1766 137 0 0 chr4 39478802 39479050 -162849297 + AluSx SINE Alu 49 296 -16 237 33 0 0 chr4 39479569 39479599 -162848748 + (TC)n Simple_repeat Simple_repeat 1 30 0 833 200 28 0 chr4 39479601 39479746 -162848601 - MLT1A1 LTR MaLR -72 293 145 330 204 32 32 chr4 39479782 39479875 -162848472 - L1MC4 LINE L1 -1337 6705 6613 506 269 25 6 chr4 39480004 39480052 -162848295 - L1MA10 LINE L1 -3 6331 6284 2912 257 31 24 chr4 39480052 39481586 -162846761 - L1ME1 LINE L1 -44 6122 4571 2007 28 36 0 chr4 39481586 39481833 -162846514 + L1PA5 LINE L1 5895 6150 -4 2912 257 31 24 chr4 39481833 39482034 -162846313 - L1ME1 LINE L1 -1595 4571 4373 6270 134 32 8 chr4 39482052 39483672 -162844675 - L1MA1 LINE L1 -4 6298 4639 1379 191 24 42 chr4 39483685 39483881 -162844466 - L1MA1 LINE L1 -2451 3695 3506 2289 81 13 29 chr4 39483881 39484188 -162844159 - AluY SINE Alu -9 302 1 1379 191 24 42 chr4 39484188 39484326 -162844021 - L1MA1 LINE L1 -2640 3506 3367 * 1557 243 44 30 chr4 39484297 39484894 -162843453 - L1ME1 LINE L1 -1721 4425 3821 810 333 75 22 chr4 39484939 39485354 -162842993 - L2 LINE L2 -1 3312 2876 240 257 44 26 chr4 39485878 39485991 -162842356 + MER103 DNA DNA 9 123 -43 706 229 136 63 chr4 39486385 39486717 -162841630 + LTR18A LTR ERVL 1 356 -1 1336 230 40 9 chr4 39486977 39487485 -162840862 - MLT1E LTR MaLR 0 593 26 216 353 173 0 chr4 39487701 39487851 -162840496 + MIR SINE MIR 71 246 -16 381 301 10 70 chr4 39487980 39488179 -162840168 - L1ME2 LINE L1 -258 5906 5720 2087 135 48 22 chr4 39488196 39488551 -162839796 - THE1B LTR MaLR 0 364 1 9614 93 6 15 chr4 39488557 39488860 -162839487 - THE1B-int LTR MaLR -7 1573 1269 2808 13 0 0 chr4 39488860 39489166 -162839181 - AluYb8 SINE Alu -12 306 1 9614 93 6 15 chr4 39489166 39490443 -162837904 - THE1B-int LTR MaLR -311 1269 1 1514 122 7 28 chr4 39490443 39490751 -162837596 - THE1B LTR MaLR 0 364 1 434 151 93 0 chr4 39490990 39491076 -162837271 - MER81 DNA DNA 0 114 21 2306 165 31 13 chr4 39491204 39491759 -162836588 + L1MA4A LINE L1 5658 6283 -20 981 205 5 0 chr4 39492259 39492444 -162835903 - L1MB1 LINE L1 -80 6088 5903 2508 86 5 76 chr4 39492446 39492522 -162835825 - MER48 LTR ERV1 0 387 307 2284 75 0 0 chr4 39492522 39492817 -162835530 - AluY SINE Alu -15 296 2 2508 86 5 76 chr4 39492817 39493147 -162835200 - MER48 LTR ERV1 -80 307 10 2272 157 27 7 chr4 39493157 39493565 -162834782 - L1MB1 LINE L1 -267 5901 5486 416 122 27 0 chr4 39493586 39493660 -162834687 + L1MB1 LINE L1 6093 6168 0 462 18 0 0 chr4 39493702 39493757 -162834590 + (TA)n Simple_repeat Simple_repeat 2 56 0 22 35 0 0 chr4 39494586 39494615 -162833732 + AT_rich Low_complexity Low_complexity 1 29 0 426 303 53 43 chr4 39494870 39495170 -162833177 - MARNA DNA Mariner -206 380 78 2261 113 10 0 chr4 39495557 39495866 -162832481 - AluSx SINE Alu 0 312 1 284 308 110 14 chr4 39496145 39496291 -162832056 - MIR SINE MIR -50 212 53 509 296 111 18 chr4 39496917 39497197 -162831150 + MER90 LTR ERV1 212 517 -58 1445 197 33 16 chr4 39497283 39497587 -162830760 + AluJo SINE Alu 1 309 -3 408 71 0 0 chr4 39497874 39497930 -162830417 + (TA)n Simple_repeat Simple_repeat 1 56 0 1479 141 129 25 chr4 39497930 39498256 -162830091 + MER46B DNA MER2_type 1 235 -1 3539 194 87 8 chr4 39498661 39498710 -162829637 + MER21B LTR ERV1 1 45 -818 2104 123 14 0 chr4 39498710 39499003 -162829344 - AluSx SINE Alu -15 297 1 3539 194 87 8 chr4 39499003 39499668 -162828679 + MER21B LTR ERV1 45 771 -92 1445 228 6 10 chr4 39501044 39501355 -162826992 - AluJo SINE Alu -2 310 1 598 238 38 22 chr4 39501714 39501899 -162826448 - L1ME3A LINE L1 -239 5931 5744 1149 190 93 8 chr4 39501907 39502154 -162826193 - MLT1E3 LTR MaLR -1 623 356 340 321 95 24 chr4 39502155 39502650 -162825697 - L1MEc LINE L1 -4003 2718 2189 460 253 118 0 chr4 39502654 39502824 -162825523 - L1MEc LINE L1 -4579 2142 1953 815 119 56 0 chr4 39502847 39502973 -162825374 + AluSq/x SINE Alu 1 133 -179 1324 124 0 25 chr4 39502976 39503178 -162825169 + AluSg/x SINE Alu 97 293 -19 419 325 62 29 chr4 39503185 39503428 -162824919 - L1MEc LINE L1 -4776 1945 1695 845 150 0 14 chr4 39503593 39503733 -162824614 + FLAM_C SINE Alu 6 143 0 230 288 48 8 chr4 39503746 39503871 -162824476 - L1MEc LINE L1 -5111 1429 1300 24 32 0 0 chr4 39504698 39504729 -162823618 + AT_rich Low_complexity Low_complexity 1 31 0 407 278 71 17 chr4 39504824 39505161 -162823186 - L1MC5 LINE L1 -451 7510 7259 746 194 0 8 chr4 39505191 39505325 -162823022 - FLAM_A SINE Alu 0 133 1 956 220 28 60 chr4 39505336 39505765 -162822582 - L1MC5 LINE L1 -730 7231 6875 284 356 39 11 chr4 39505880 39506060 -162822287 - L1ME LINE L1 -522 5642 5458 * 910 255 88 17 chr4 39506058 39506352 -162821995 - L1ME1 LINE L1 -14 6152 5838 635 290 36 0 chr4 39506362 39506610 -162821737 - L1ME1 LINE L1 -1429 4717 4461 * 2653 121 25 119 chr4 39506608 39507087 -162821260 + L1PA3 LINE L1 5721 6154 -1 31 26 0 0 chr4 39507087 39507125 -162821222 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr4 39507918 39507941 -162820406 + AT_rich Low_complexity Low_complexity 1 23 0 506 16 16 0 chr4 39508102 39508165 -162820182 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 393 342 89 21 chr4 39508453 39508643 -162819704 - L2 LINE L2 0 3272 3070 5326 145 38 18 chr4 39509957 39510524 -162817823 - L1MA8 LINE L1 0 6291 5694 2829 89 54 12 chr4 39510524 39510950 -162817397 + MLT2A1 LTR ERVL 1 444 0 5326 145 38 18 chr4 39510950 39511377 -162816970 - L1MA8 LINE L1 -597 5694 5277 2600 11 0 0 chr4 39511730 39512054 -162816293 - AluY SINE Alu 0 326 3 2001 123 0 3 chr4 39512057 39512350 -162815997 - Harlequin LTR ERV1 -6604 292 1 1949 182 93 30 chr4 39512350 39512811 -162815536 - LTR2B LTR ERV1 0 490 1 1058 228 28 4 chr4 39513477 39513732 -162814615 + MLT1F1 LTR MaLR 307 567 0 2546 142 33 24 chr4 39514068 39514492 -162813855 + Tigger2a DNA MER2_type 1 428 -6 21 0 0 0 chr4 39515172 39515193 -162813154 + AT_rich Low_complexity Low_complexity 1 21 0 629 13 13 0 chr4 39515867 39515945 -162812402 + L1PA3 LINE L1 6076 6154 -1 31 26 0 0 chr4 39515945 39515983 -162812364 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr4 39516776 39516799 -162811548 + AT_rich Low_complexity Low_complexity 1 23 0 506 16 16 0 chr4 39516960 39517023 -162811324 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 393 342 89 21 chr4 39517311 39517501 -162810846 - L2 LINE L2 0 3272 3070 5326 145 38 18 chr4 39518814 39519381 -162808966 - L1MA8 LINE L1 0 6291 5694 2829 89 54 12 chr4 39519381 39519807 -162808540 + MLT2A1 LTR ERVL 1 444 0 5326 145 38 18 chr4 39519807 39520234 -162808113 - L1MA8 LINE L1 -597 5694 5277 2299 63 0 3 chr4 39520587 39520914 -162807433 - AluY SINE Alu 0 326 1 689 313 33 0 chr4 39520916 39521127 -162807220 + MIR SINE MIR 45 262 0 2367 220 44 22 chr4 39521170 39521413 -162806934 + MLT2B1 LTR ERVL 1 237 -283 4328 91 3 84 chr4 39521413 39522136 -162806211 + MER4A LTR ERV1 1 664 0 2367 220 44 22 chr4 39522136 39522393 -162805954 + MLT2B1 LTR ERVL 237 512 -8 268 221 65 0 chr4 39523006 39523083 -162805264 - HAL1 LINE L1 -167 2340 2259 700 242 6 12 chr4 39523253 39523414 -162804933 - MER5B DNA MER1_type -16 162 3 362 339 28 34 chr4 39524274 39524451 -162803896 - L2 LINE L2 -252 3061 2886 3455 170 26 5 chr4 39524671 39525334 -162803013 + L1MC1 LINE L1 5657 6333 0 600 206 46 105 chr4 39526021 39526240 -162802107 + MER63A DNA MER1_type 5 210 0 576 141 0 10 chr4 39526894 39526993 -162801354 + MER4A LTR ERV1 1 98 -566 1782 177 82 19 chr4 39526993 39527372 -162800975 + MER4A LTR ERV1 261 663 -1 1873 136 0 7 chr4 39527986 39528265 -162800082 + AluSx SINE Alu 16 292 -20 25 51 0 0 chr4 39529346 39529385 -162798962 + AT_rich Low_complexity Low_complexity 1 39 0 185 313 62 25 chr4 39529423 39529503 -162798844 + MIR SINE MIR 74 156 -106 2346 97 0 0 chr4 39529643 39529951 -162798396 - AluSx SINE Alu -4 308 1 21 0 0 0 chr4 39530253 39530274 -162798073 + AT_rich Low_complexity Low_complexity 1 21 0 1554 241 43 72 chr4 39530522 39531107 -162797240 + L1MCb LINE L1 3 570 -5475 1824 245 29 46 chr4 39531169 39532031 -162796316 + L1MCb LINE L1 553 1404 -4852 469 236 71 57 chr4 39532035 39532315 -162796032 - MER34B LTR ERV1 -3 562 279 5584 191 68 26 chr4 39532447 39533752 -162794595 + L1MC3 LINE L1 6411 7770 -15 255 217 0 0 chr4 39533881 39533941 -162794406 + (TA)n Simple_repeat Simple_repeat 2 61 0 452 300 17 44 chr4 39534037 39534330 -162794017 + L1MCb LINE L1 1346 1630 -4924 246 229 57 14 chr4 39534483 39534553 -162793794 - Zaphod DNA AcHobo -3550 481 409 489 60 24 24 chr4 39534577 39534660 -162793687 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 247 345 28 100 chr4 39534916 39535235 -162793112 - L2 LINE L2 -12 3260 2965 35 0 0 0 chr4 39535516 39535551 -162792796 + AT_rich Low_complexity Low_complexity 1 35 0 441 277 9 0 chr4 39535555 39535667 -162792680 + MER2 DNA MER2_type 1 113 -232 14893 137 10 19 chr4 39535667 39539050 -162789297 + L1PA10 LINE L1 2717 6065 -103 2498 121 8 19 chr4 39539051 39539430 -162788917 + THE1C LTR MaLR 1 375 0 9642 122 43 1 chr4 39539432 39540953 -162787394 + THE1C-int LTR MaLR 3 1580 0 2323 114 50 8 chr4 39540953 39541313 -162787034 + THE1C LTR MaLR 1 375 0 738 86 19 0 chr4 39541313 39541418 -162786929 + L1PA10 LINE L1 6062 6168 0 4475 114 13 10 chr4 39541442 39542133 -162786214 + L1PA11 LINE L1 5475 6167 -7 628 156 41 0 chr4 39542137 39542259 -162786088 + MER2 DNA MER2_type 84 210 -135 321 272 14 95 chr4 39542767 39542914 -162785433 - MLT1A2 LTR MaLR -68 328 194 199 172 17 17 chr4 39542920 39542978 -162785369 + GA-rich Low_complexity Low_complexity 4 61 0 755 250 0 12 chr4 39542988 39543156 -162785191 - MLT1A2 LTR MaLR -188 186 21 213 368 53 0 chr4 39543207 39543321 -162785026 - MIR SINE MIR -123 139 20 327 326 93 50 chr4 39543339 39543906 -162784441 + L2 LINE L2 2403 3084 -188 375 297 25 69 chr4 39544013 39544211 -162784136 - MLT1J LTR MaLR 0 511 323 596 234 108 0 chr4 39544211 39544369 -162783978 + MER58A DNA MER1_type 1 175 -49 726 181 7 28 chr4 39544470 39544614 -162783733 - FLAM_C SINE Alu -2 141 1 717 269 65 29 chr4 39544635 39544880 -162783467 - MLT1J LTR MaLR -257 254 1 181 250 0 0 chr4 39544902 39544946 -162783401 + L2 LINE L2 3262 3305 -8 243 326 33 11 chr4 39546271 39546363 -162781984 + MIR SINE MIR 82 175 -87 244 233 0 0 chr4 39546582 39546642 -162781705 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 25 0 0 0 chr4 39547623 39547648 -162780699 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr4 39547848 39547882 -162780465 + AT_rich Low_complexity Low_complexity 1 34 0 629 64 41 35 chr4 39547882 39547890 -162780457 + (TTATA)n Simple_repeat Simple_repeat 1 7 -166 1783 209 14 3 chr4 39547890 39548249 -162780098 - L1PB4 LINE L1 -11 6145 5783 629 64 41 35 chr4 39548249 39548412 -162779935 + (TTATA)n Simple_repeat Simple_repeat 7 173 0 1970 130 0 7 chr4 39548420 39548728 -162779619 - L1PB4 LINE L1 -375 5781 5476 * 31065 114 14 56 chr4 39548723 39555138 -162773209 - L1PA7 LINE L1 -4 6150 12 6212 229 58 23 chr4 39555106 39556854 -162771493 - L1MC/D LINE L1 -669 5487 3612 * 2358 115 19 19 chr4 39556854 39557218 -162771129 + THE1B LTR MaLR 1 364 0 6212 229 58 23 chr4 39557218 39557767 -162770580 - L1MC/D LINE L1 -2544 3612 3084 2606 258 55 1 chr4 39557763 39558654 -162769693 - L1M4 LINE L1 -2192 3954 3016 * 275 331 26 52 chr4 39560337 39560491 -162767856 - MER5A DNA MER1_type 0 189 40 53 78 0 0 chr4 39561181 39561297 -162767050 + AT_rich Low_complexity Low_complexity 1 116 0 22 0 0 0 chr4 39561479 39561501 -162766846 + AT_rich Low_complexity Low_complexity 1 22 0 402 277 8 39 chr4 39561832 39561962 -162766385 + MER58B DNA MER1_type 216 341 0 885 159 77 0 chr4 39561970 39562165 -162766182 - L1MA9 LINE L1 0 6312 6103 2620 142 23 9 chr4 39562171 39562609 -162765738 + L1M2 LINE L1 5298 5741 -550 757 346 116 31 chr4 39563831 39564544 -162763803 + L3 LINE CR1 743 1516 -61 211 335 119 23 chr4 39564569 39564745 -162763602 + MIR SINE MIR 41 233 -29 290 331 181 0 chr4 39564824 39564951 -162763396 - MER5A DNA MER1_type -6 183 34 285 98 0 0 chr4 39565758 39565799 -162762548 + (TG)n Simple_repeat Simple_repeat 2 42 0 21 36 0 0 chr4 39565830 39565858 -162762489 + AT_rich Low_complexity Low_complexity 1 28 0 183 42 0 0 chr4 39566401 39566425 -162761922 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 289 273 111 10 chr4 39568012 39568111 -162760236 + MIR SINE MIR 5 113 -149 288 0 0 0 chr4 39568141 39568173 -162760174 + (TG)n Simple_repeat Simple_repeat 1 32 0 2322 104 0 0 chr4 39569033 39569340 -162759007 - AluSg SINE Alu -3 307 1 2118 94 13 13 chr4 39569763 39570072 -162758275 + AluSc SINE Alu 1 309 0 323 287 23 47 chr4 39570072 39570201 -162758146 - MIR SINE MIR -90 172 47 403 262 29 35 chr4 39571225 39571397 -162756950 + L2 LINE L2 3143 3313 0 22 0 0 0 chr4 39572050 39572072 -162756275 + AT_rich Low_complexity Low_complexity 1 22 0 183 42 0 0 chr4 39572824 39572848 -162755499 + (TG)n Simple_repeat Simple_repeat 2 25 0 194 229 14 0 chr4 39572865 39572935 -162755412 + CT-rich Low_complexity Low_complexity 3 73 0 3895 143 22 2 chr4 39573026 39573661 -162754686 - MER39B LTR ERV1 -4 649 2 627 285 89 26 chr4 39573662 39573964 -162754383 - LTR16B LTR ERVL -47 417 97 812 172 0 0 chr4 39574007 39574158 -162754189 + MER67D LTR ERV1 1 151 -363 680 159 7 36 chr4 39574158 39574318 -162754029 - FLAM_C SINE Alu 0 143 7 1125 170 85 18 chr4 39574333 39574557 -162753790 + MER67C LTR ERV1 165 403 -307 287 136 85 17 chr4 39574636 39574695 -162753652 + MER67D LTR ERV1 448 510 -4 281 331 88 53 chr4 39574735 39574998 -162753349 - L2 LINE L2 -1 3312 3041 383 307 64 14 chr4 39575099 39575239 -162753108 + MIR SINE MIR 109 255 -7 298 306 161 33 chr4 39576051 39576231 -162752116 + MIR SINE MIR 9 211 -51 1988 169 91 41 chr4 39577084 39577545 -162750802 - LTR2B LTR ERV1 0 490 7 37254 64 13 11 chr4 39577546 39582379 -162745968 - Harlequin LTR ERV1 0 6896 2054 8526 59 22 17 chr4 39582373 39583525 -162744822 - Harlequin LTR ERV1 -5477 1419 263 * 691 93 0 46 chr4 39583518 39583626 -162744721 - HERVE LTR ERV1 -7428 385 283 * 781 288 13 13 chr4 39583626 39583955 -162744392 - AluY SINE Alu 0 331 3 298 326 11 22 chr4 39583957 39584135 -162744212 - HERVE LTR ERV1 -6603 293 118 3034 278 71 31 chr4 39585819 39587140 -162741207 + L2 LINE L2 1888 3255 -58 9417 33 1 0 chr4 39588777 39589930 -162738417 - L1PA4 LINE L1 -2038 4108 2955 * 10688 27 5 1 chr4 39589928 39591962 -162736385 + L1PA4 LINE L1 4111 6152 -3 1903 252 50 25 chr4 39591977 39592683 -162735664 - L1M4 LINE L1 -1671 4475 3753 3542 95 2 0 chr4 39592685 39593171 -162735176 + L1PA12 LINE L1 5679 6165 -3 2502 264 58 9 chr4 39593381 39594360 -162733987 - L1M4 LINE L1 -2415 3731 2705 361 115 0 0 chr4 39594367 39594428 -162733919 - L1MB3 LINE L1 -28 6155 6095 2242 109 0 10 chr4 39594436 39594740 -162733607 - AluSq SINE Alu -12 301 1 3347 167 15 2 chr4 39594800 39595404 -162732943 - L1MB3 LINE L1 -24 6159 5548 854 101 101 0 chr4 39595421 39595560 -162732787 - AluSg/x SINE Alu -1 309 157 1404 84 0 0 chr4 39595956 39596134 -162732213 + AluY SINE Alu 1 178 -133 441 0 0 0 chr4 39596135 39596184 -162732163 + (CA)n Simple_repeat Simple_repeat 2 50 0 295 324 7 56 chr4 39596411 39596553 -162731794 - MIR3 SINE MIR -2 206 72 783 158 82 53 chr4 39596576 39596747 -162731600 + MLT1C LTR MaLR 6 181 -286 * 785 227 17 11 chr4 39596743 39596919 -162731428 + MLT1C LTR MaLR 291 467 0 21 0 0 0 chr4 39598296 39598317 -162730030 + AT_rich Low_complexity Low_complexity 1 21 0 196 238 12 12 chr4 39598333 39598413 -162729934 + (TA)n Simple_repeat Simple_repeat 2 81 0 492 292 111 37 chr4 39598635 39599482 -162728865 - L1MB3 LINE L1 -846 5300 4391 2708 133 12 9 chr4 39599501 39599928 -162728419 - LTR9B LTR ERV1 -86 558 131 1247 89 78 0 chr4 39599926 39600106 -162728241 - LTR9B LTR ERV1 -450 194 1 * 9560 114 17 11 chr4 39600107 39602623 -162725724 - HUERS-P3b LTR ERV1 -7 7411 4714 5533 92 6 43 chr4 39602615 39603448 -162724899 - HUERS-P3b LTR ERV1 -3544 3874 3073 * 2097 171 67 3 chr4 39603448 39603823 -162724524 + LTR8 LTR ERV1 1 399 -292 6816 117 18 9 chr4 39603823 39605582 -162722765 - HUERS-P3b LTR ERV1 -4760 2658 747 2181 58 54 0 chr4 39605588 39605866 -162722481 - AluY SINE Alu -18 293 1 693 155 39 71 chr4 39605882 39605912 -162722435 - HUERS-P3b LTR ERV1 -6859 559 530 2406 59 0 7 chr4 39605912 39606218 -162722129 - AluY SINE Alu -7 304 1 693 155 39 71 chr4 39606218 39606342 -162722005 - HUERS-P3b LTR ERV1 -6888 530 410 379 206 41 52 chr4 39606346 39606443 -162721904 - HUERS-P3b LTR ERV1 -7322 96 1 908 165 13 0 chr4 39606443 39606601 -162721746 - LTR9B LTR ERV1 0 644 485 370 330 21 0 chr4 39606629 39606817 -162721530 - L1MB3 LINE L1 -1778 4368 4177 292 266 206 16 chr4 39607477 39607661 -162720686 + MIR SINE MIR 44 262 0 14658 225 35 8 chr4 39608795 39614869 -162713478 + L1PA15 LINE L1 2 6814 -2 190 313 15 30 chr4 39615449 39615516 -162712831 - MIR SINE MIR -109 153 88 30 59 0 0 chr4 39615552 39615603 -162712744 + AT_rich Low_complexity Low_complexity 1 51 0 643 257 116 33 chr4 39616035 39616276 -162712071 + LTR40a LTR ERVL 257 517 -2 301 328 50 8 chr4 39616289 39616408 -162711939 + MLT1J LTR MaLR 86 209 -302 218 316 188 26 chr4 39616587 39616704 -162711643 - L2 LINE L2 0 3272 3137 1193 325 102 5 chr4 39616780 39617346 -162711001 + L2 LINE L2 1054 1674 -1640 383 370 59 31 chr4 39619715 39620069 -162708278 - L2 LINE L2 -74 3198 2835 2538 7 0 0 chr4 39620349 39620622 -162707725 - AluYb8 SINE Alu -11 307 35 202 83 0 56 chr4 39621177 39621213 -162707134 + L2 LINE L2 3020 3053 -260 825 245 5 42 chr4 39621455 39621671 -162706676 - MIR SINE MIR -10 252 45 246 356 33 0 chr4 39621778 39621868 -162706479 - MIR SINE MIR -83 125 33 428 351 5 22 chr4 39622057 39622279 -162706068 - MLT2E LTR ERVL 0 628 411 400 273 15 45 chr4 39622342 39622474 -162705873 - MLT2E LTR ERVL -469 159 32 928 238 80 27 chr4 39622514 39622945 -162705402 + MLT1E LTR MaLR 20 569 -24 1759 154 57 13 chr4 39623538 39623837 -162704510 + AluJo SINE Alu 1 312 0 417 293 76 57 chr4 39624411 39624780 -162703567 + MLT1I LTR MaLR 1 376 -33 1061 318 134 26 chr4 39625991 39626917 -162701430 - L2 LINE L2 -215 3057 2029 316 301 33 104 chr4 39630489 39630788 -162697559 + L2 LINE L2 2578 2855 -459 243 330 85 17 chr4 39630866 39630984 -162697363 + MLT1J2 LTR MaLR 83 208 -242 916 9 0 0 chr4 39631022 39631128 -162697219 + L1PA4 LINE L1 6047 6152 -3 350 333 14 35 chr4 39631324 39631468 -162696879 + L2 LINE L2 2897 3037 -235 22 56 0 0 chr4 39632111 39632147 -162696200 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chr4 39632324 39632348 -162695999 + (TTA)n Simple_repeat Simple_repeat 2 25 0 294 50 0 0 chr4 39633040 39633080 -162695267 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 655 295 68 57 chr4 39633082 39633451 -162694896 - L2 LINE L2 -15 3298 2926 374 318 95 7 chr4 39633745 39633893 -162694454 - MLT1J2 LTR MaLR -18 432 272 430 251 51 55 chr4 39634181 39634416 -162693931 - L1ME3A LINE L1 -219 5951 5718 349 216 144 0 chr4 39635088 39635185 -162693162 - L1ME3A LINE L1 -584 5578 5468 512 117 26 0 chr4 39635370 39635447 -162692900 - THE1C LTR MaLR -296 79 1 22 70 0 0 chr4 39636088 39636131 -162692216 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 39636401 39636423 -162691924 + AT_rich Low_complexity Low_complexity 1 22 0 5031 133 48 10 chr4 39637070 39638021 -162690326 - L1PB3 LINE L1 -1 6153 5171 4100 219 22 5 chr4 39638016 39638843 -162689504 + L1PBb LINE L1 130 970 -5234 * 306 262 12 0 chr4 39639057 39639141 -162689206 + (TA)n Simple_repeat Simple_repeat 2 86 0 262 354 0 0 chr4 39639452 39639534 -162688813 + MIR3 SINE MIR 82 163 -45 33715 80 5 14 chr4 39639764 39640587 -162687760 - L1PA6 LINE L1 -10 6144 5315 2428 87 0 0 chr4 39640587 39640897 -162687450 + AluY SINE Alu 1 310 -1 33715 80 5 14 chr4 39640897 39645658 -162682689 - L1PA6 LINE L1 -839 5315 606 335 272 79 90 chr4 39645687 39645966 -162682381 + L2 LINE L2 3025 3300 -13 544 297 110 65 chr4 39646601 39647018 -162681329 - MLT1J LTR MaLR -75 436 1 1343 225 95 54 chr4 39647631 39648128 -162680219 + LTR40a LTR ERVL 3 519 0 318 87 0 0 chr4 39649532 39649578 -162678769 + (TG)n Simple_repeat Simple_repeat 1 46 0 27 0 0 0 chr4 39649868 39649895 -162678452 + AT_rich Low_complexity Low_complexity 1 27 0 360 262 191 49 chr4 39650841 39651066 -162677281 + MIR SINE MIR 3 259 -3 2619 158 14 9 chr4 39651471 39651895 -162676452 - MSTB LTR MaLR 0 426 1 853 166 13 0 chr4 39652999 39653150 -162675197 - L1PA16 LINE L1 -4 6162 6010 2016 116 0 3 chr4 39653550 39653835 -162674512 + AluSx SINE Alu 17 300 -12 228 244 122 37 chr4 39654028 39654110 -162674237 - L2 LINE L2 -5 3267 3179 302 294 86 25 chr4 39656115 39656278 -162672069 - MIR SINE MIR -53 209 37 548 323 85 38 chr4 39656671 39657073 -162671274 - L2 LINE L2 -36 3277 2804 806 294 50 32 chr4 39657086 39657426 -162670921 - LTR16B LTR ERVL -24 440 95 814 207 148 17 chr4 39657545 39657782 -162670565 - L2 LINE L2 -510 2804 2537 200 244 0 0 chr4 39658315 39658356 -162669991 + T-rich Low_complexity Low_complexity 1 41 0 284 348 35 0 chr4 39658475 39658590 -162669757 + MLT1H LTR MaLR 12 130 -419 2882 3 0 0 chr4 39659012 39659330 -162669017 + AluYb8 SINE Alu 1 318 0 2900 72 5 8 chr4 39659330 39659384 -162668963 + L1P1 LINE L1 5294 5347 -808 4105 24 0 0 chr4 39659384 39659852 -162668495 - L1PA3 LINE L1 -1 6154 5687 2900 72 5 8 chr4 39659852 39660188 -162668159 + L1PA3 LINE L1 5347 5683 -472 411 251 80 31 chr4 39660310 39660473 -162667874 + MIR SINE MIR 92 262 0 895 231 17 22 chr4 39662604 39662835 -162665512 - MSTD LTR MaLR 0 396 196 864 156 0 0 chr4 39662847 39663027 -162665320 + GA-rich Low_complexity Low_complexity 1 180 0 536 286 0 7 chr4 39663055 39663195 -162665152 - MSTD LTR MaLR -257 139 1 4569 45 0 0 chr4 39663299 39663854 -162664493 - L1P LINE L1 -4038 2108 1554 326 245 81 72 chr4 39664448 39664864 -162663483 - L1MCc LINE L1 -4955 1468 1163 534 99 0 0 chr4 39665749 39665840 -162662507 + (GA)n Simple_repeat Simple_repeat 1 91 0 1263 95 0 11 chr4 39667122 39667301 -162661046 - HERVK9 LTR ERVK -132 5784 5608 6746 82 14 0 chr4 39667368 39668222 -162660125 - HERVK9 LTR ERVK -282 5634 4769 288 239 0 30 chr4 39672024 39672091 -162656256 - MER81 DNA DNA -27 87 23 1268 277 101 36 chr4 39673027 39673721 -162654626 - MER21B LTR ERV1 -116 747 9 6720 27 0 1 chr4 39674032 39674803 -162653544 + L1P LINE L1 3559 4330 -1816 2287 78 3 3 chr4 39674803 39675111 -162653236 - AluYb8 SINE Alu -10 308 1 648 214 18 80 chr4 39675112 39675336 -162653011 - L1M4 LINE L1 -3319 2827 2618 * 208 272 0 52 chr4 39676554 39676727 -162651620 + (CCTG)n Simple_repeat Simple_repeat 4 167 0 1290 68 0 0 chr4 39678242 39678405 -162649942 - L1P3 LINE L1 -661 5511 5349 340 163 40 25 chr4 39678481 39678568 -162649779 - MLT1J2 LTR MaLR -10 440 303 270 243 68 61 chr4 39678671 39678819 -162649528 - MLT1I LTR MaLR -241 168 20 1065 142 117 95 chr4 39678928 39679203 -162649144 + MLT1A1 LTR MaLR 1 332 -64 1593 163 24 10 chr4 39679203 39679492 -162648855 - AluJb SINE Alu -15 297 5 1065 142 117 95 chr4 39679492 39679559 -162648788 + MLT1A1 LTR MaLR 332 396 0 309 231 123 23 chr4 39679622 39679752 -162648595 + MLT1C LTR MaLR 10 152 -315 480 279 61 5 chr4 39680073 39680270 -162648077 + L1MCc LINE L1 23 230 -6193 322 314 46 13 chr4 39680301 39680454 -162647893 + L1MCc LINE L1 398 555 -5868 1267 273 123 28 chr4 39680494 39681128 -162647219 + L1MCc LINE L1 658 1351 -5072 2005 117 0 3 chr4 39682046 39682346 -162646001 - AluSq SINE Alu -14 299 1 1576 219 35 33 chr4 39682982 39683438 -162644909 + MLT1C LTR MaLR 6 462 -5 392 266 30 0 chr4 39684778 39684927 -162643420 + MIR SINE MIR 17 171 -66 889 247 29 41 chr4 39685266 39685582 -162642765 - MLT1E2 LTR MaLR -37 589 278 629 238 63 120 chr4 39685758 39686107 -162642240 - MLT1C LTR MaLR 0 390 62 25 0 0 0 chr4 39687036 39687061 -162641286 + AT_rich Low_complexity Low_complexity 1 25 0 341 22 22 0 chr4 39687186 39687232 -162641115 + (CA)n Simple_repeat Simple_repeat 1 47 0 1834 136 176 16 chr4 39687332 39687701 -162640646 + MSTA LTR MaLR 1 428 0 2449 169 21 9 chr4 39688688 39689119 -162639228 - MER50 LTR ERV1 0 734 299 2281 182 92 25 chr4 39689119 39689596 -162638751 - LTR22 LTR ERVK 0 509 1 763 75 0 0 chr4 39689607 39689700 -162638647 - MER50 LTR ERV1 -444 290 198 1550 112 70 0 chr4 39689802 39690043 -162638304 + MSTA LTR MaLR 171 428 0 308 312 19 32 chr4 39690907 39691064 -162637283 - MER112 DNA MER1_type -103 157 3 323 43 0 22 chr4 39691209 39691255 -162637092 + (TG)n Simple_repeat Simple_repeat 2 46 0 1245 122 0 12 chr4 39691734 39691906 -162636441 - AluY SINE Alu -141 170 1 2144 128 3 0 chr4 39692103 39692400 -162635947 - AluJb SINE Alu -14 298 1 335 249 158 45 chr4 39694402 39694579 -162633768 - Charlie7 DNA MER1_type -541 2071 1875 3455 101 32 22 chr4 39696140 39696646 -162631701 + MER9 LTR ERVK 1 511 0 263 282 13 0 chr4 39698111 39698189 -162630158 - L2 LINE L2 -21 3251 3173 715 235 117 60 chr4 39699330 39699765 -162628582 - MLT1C LTR MaLR 0 467 1 247 285 168 19 chr4 39700444 39700700 -162627647 - MLT1J2 LTR MaLR -125 325 32 590 224 91 12 chr4 39700868 39701033 -162627314 + MER45A DNA AcHobo 1 178 0 767 319 94 32 chr4 39701620 39702143 -162626204 - LTR67 LTR ERVL -1 556 2 754 299 104 42 chr4 39702367 39702960 -162625387 + L2 LINE L2 2635 3271 -42 2666 74 6 0 chr4 39704986 39705324 -162623023 - THE1A LTR MaLR -15 340 1 201 280 0 0 chr4 39706237 39706287 -162622060 - L2 LINE L2 -4 3268 3219 2700 30 0 0 chr4 39707054 39707352 -162620995 + AluY SINE Alu 1 298 -13 731 334 31 26 chr4 39708189 39708539 -162619808 + MLT1I LTR MaLR 9 360 -49 4436 209 22 44 chr4 39708539 39710532 -162617815 - L1MB8 LINE L1 -13 6165 4217 1754 111 0 24 chr4 39710535 39710788 -162617559 + AluSq SINE Alu 35 281 -32 271 0 51 0 chr4 39710788 39710827 -162617520 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 240 186 0 0 chr4 39710849 39710892 -162617455 + MLT1I LTR MaLR 354 396 -13 269 367 86 0 chr4 39711828 39712019 -162616328 - MIR SINE MIR -21 241 35 293 313 21 0 chr4 39712477 39712573 -162615774 + MIR SINE MIR 56 153 -109 617 300 8 34 chr4 39712761 39713028 -162615319 + MIR SINE MIR 3 262 0 207 188 0 0 chr4 39713028 39713076 -162615271 + (CTA)n Simple_repeat Simple_repeat 2 49 0 363 44 0 0 chr4 39713379 39713424 -162614923 + (TG)n Simple_repeat Simple_repeat 1 45 0 319 288 42 17 chr4 39714247 39714365 -162613982 + LTR67 LTR ERVL 428 548 -9 2589 126 0 6 chr4 39714516 39714882 -162613465 - THE1B LTR MaLR 0 364 1 37 76 0 0 chr4 39715661 39715740 -162612607 + AT_rich Low_complexity Low_complexity 1 79 0 266 251 46 24 chr4 39716542 39716641 -162611706 + MIR SINE MIR 45 145 -63 21 57 0 0 chr4 39717198 39717233 -162611114 + AT_rich Low_complexity Low_complexity 1 35 0 376 273 61 20 chr4 39718985 39719084 -162609263 + MIR SINE MIR 25 127 -81 419 265 86 0 chr4 39719156 39719273 -162609074 - MIR SINE MIR -101 161 35 399 41 0 0 chr4 39719607 39719656 -162608691 + (TG)n Simple_repeat Simple_repeat 2 50 0 2342 98 0 0 chr4 39724823 39725119 -162603228 - AluSq SINE Alu -17 296 1 210 297 8 55 chr4 39725191 39725319 -162603028 - MIR SINE MIR -78 184 63 271 298 12 0 chr4 39725665 39725749 -162602598 - L3 LINE CR1 -6 1571 1487 298 185 37 49 chr4 39726041 39726122 -162602225 - MER46C DNA MER2_type 0 338 259 892 150 96 0 chr4 39726207 39726374 -162601973 + MER3 DNA MER1_type 1 183 -26 311 247 0 130 chr4 39726407 39726553 -162601794 - MER46C DNA MER2_type -201 137 11 243 0 0 0 chr4 39727369 39727396 -162600951 + (CA)n Simple_repeat Simple_repeat 2 28 0 738 295 31 0 chr4 39727587 39727814 -162600533 + MIR SINE MIR 29 262 0 2015 150 5 57 chr4 39727939 39728202 -162600145 - MER7A DNA MER2_type -2692 346 108 2100 113 14 14 chr4 39728202 39728494 -162599853 + AluSx SINE Alu 1 292 -20 2015 150 5 57 chr4 39728494 39728597 -162599750 - MER7A DNA MER2_type -2930 108 1 388 268 8 49 chr4 39729047 39729170 -162599177 - L2 LINE L2 0 3313 3196 1004 250 130 55 chr4 39729673 39730210 -162598137 - MLT1H1 LTR MaLR -2 553 1 342 145 10 0 chr4 39730952 39731016 -162597331 + MLT1H1 LTR MaLR 496 551 -4 2014 80 21 3 chr4 39731135 39731422 -162596925 + L1PA13 LINE L1 5869 6160 -3 248 227 106 0 chr4 39733311 39733377 -162594970 + MER117 DNA MER1_type 75 147 -50 626 228 150 43 chr4 39734093 39734536 -162593811 + MLT1G1 LTR MaLR 60 622 -2 418 292 43 0 chr4 39734619 39734780 -162593567 + MIR SINE MIR 90 257 -5 234 217 50 0 chr4 39736362 39736422 -162591925 + MIR SINE MIR 74 136 -126 191 176 0 0 chr4 39736610 39736644 -162591703 + L2 LINE L2 3272 3305 -8 350 276 110 23 chr4 39737408 39737593 -162590754 + MIR3 SINE MIR 6 203 -5 420 302 133 13 chr4 39738118 39738343 -162590004 + MIR SINE MIR 6 257 -5 221 309 0 0 chr4 39738747 39738815 -162589532 - L2 LINE L2 -13 3300 3233 863 272 40 45 chr4 39738842 39739217 -162589130 - L2 LINE L2 -68 3245 2873 1021 134 37 0 chr4 39739529 39739693 -162588654 - L1M2 LINE L1 -739 5573 5404 576 263 64 20 chr4 39740614 39740865 -162587482 + MIR SINE MIR 1 262 0 2171 159 52 109 chr4 39742599 39743133 -162585214 - MLT1D LTR MaLR -1 504 1 551 286 78 68 chr4 39743398 39743797 -162584550 - MLT1K LTR MaLR -3 585 183 190 336 38 69 chr4 39743958 39744089 -162584258 + L2 LINE L2 3138 3264 -8 188 395 59 52 chr4 39745455 39745761 -162582586 + L2 LINE L2 2948 3255 -17 278 344 31 8 chr4 39745948 39746076 -162582271 - L2 LINE L2 -607 2707 2577 2379 210 125 31 chr4 39746592 39747419 -162580928 - L1ME2 LINE L1 -1 6163 5258 715 164 0 0 chr4 39747688 39747804 -162580543 + L1PA12 LINE L1 11 126 -7455 3485 263 66 53 chr4 39747811 39750089 -162578258 - L1M4 LINE L1 -825 6132 3825 410 248 35 0 chr4 39750085 39750198 -162578149 - L1M4 LINE L1 -3404 3553 3437 * 1618 233 139 43 chr4 39750226 39750476 -162577871 - L1M4 LINE L1 -4606 2353 2128 24827 33 15 48 chr4 39750476 39754354 -162573993 + L1PA4 LINE L1 2324 6155 0 1618 233 139 43 chr4 39754354 39755175 -162573172 - L1M4 LINE L1 -4831 2128 1206 297 296 61 0 chr4 39755700 39755798 -162572549 - HsTC2 DNA Tc2 -1794 104 1 2931 160 100 6 chr4 39757264 39757813 -162570534 - MER6A DNA MER2_type 0 605 5 847 303 124 13 chr4 39757819 39758278 -162570069 - LTR33 LTR ERVL 0 521 12 214 396 31 10 chr4 39758561 39758657 -162569690 - L2 LINE L2 -20 3252 3155 580 295 17 6 chr4 39758765 39758938 -162569409 - MIR SINE MIR -49 213 39 223 307 43 57 chr4 39759960 39760100 -162568247 + MIR SINE MIR 82 219 -43 * 237 266 151 45 chr4 39760097 39760296 -162568051 - MIR SINE MIR -37 225 6 1629 209 19 48 chr4 39761264 39761638 -162566709 - MLT1A1 LTR MaLR 0 365 3 21 36 0 0 chr4 39762655 39762683 -162565664 + AT_rich Low_complexity Low_complexity 1 28 0 502 300 85 14 chr4 39763787 39764010 -162564337 + MIR SINE MIR 20 258 -4 6178 126 8 8 chr4 39764076 39765013 -162563334 + L1P3 LINE L1 1 937 -4938 3386 91 21 2 chr4 39765013 39765487 -162562860 + L1PA8A LINE L1 5633 6115 -16 40 59 0 0 chr4 39766194 39766262 -162562085 + AT_rich Low_complexity Low_complexity 1 68 0 315 252 49 14 chr4 39766601 39766744 -162561603 - L1MC4 LINE L1 -1 8041 7894 704 254 14 28 chr4 39766860 39767073 -162561274 - L1ME2 LINE L1 -10 6154 5945 201 171 0 24 chr4 39767380 39767421 -162560926 - MIR SINE MIR -5 257 218 522 310 94 66 chr4 39767523 39767949 -162560398 - L2 LINE L2 -15 3257 2820 29 0 0 0 chr4 39768869 39768898 -162559449 + AT_rich Low_complexity Low_complexity 1 29 0 1557 211 54 20 chr4 39769428 39769779 -162558568 + MLT1A1 LTR MaLR 1 363 -2 1989 154 0 10 chr4 39769892 39770204 -162558143 - MER1B DNA MER1_type -30 309 1 249 355 112 42 chr4 39771978 39771998 -162556349 - L3 LINE CR1 -5 1572 1555 2547 131 51 24 chr4 39771998 39772449 -162555898 - MER4C LTR ERV1 -2 463 1 249 355 112 42 chr4 39772449 39772642 -162555705 - L3 LINE CR1 -22 1555 1344 3018 194 42 37 chr4 39773087 39773598 -162554749 - MER82 DNA MER2_type 0 653 137 2710 156 11 7 chr4 39773598 39774060 -162554287 + L1PB3 LINE L1 5690 6153 -1 3018 194 42 37 chr4 39774060 39774197 -162554150 - MER82 DNA MER2_type -516 137 2 2004 230 122 29 chr4 39774197 39774338 -162554009 - L1MC4 LINE L1 -13 8029 7902 1315 196 149 10 chr4 39774338 39774639 -162553708 + MER2 DNA MER2_type 1 343 -1 2004 230 122 29 chr4 39774639 39775146 -162553201 - L1MC4 LINE L1 -140 7902 7321 1731 242 58 42 chr4 39775151 39775701 -162552646 - MER90 LTR ERV1 -11 564 6 256 258 0 16 chr4 39775748 39775810 -162552537 + (TAGG)n Simple_repeat Simple_repeat 2 62 0 659 210 200 0 chr4 39775810 39776010 -162552337 + L1MC4 LINE L1 7093 7332 -710 368 329 79 64 chr4 39777163 39777491 -162550856 + L2 LINE L2 2854 3186 -86 689 263 85 60 chr4 39778247 39778963 -162549384 - L1MEd LINE L1 -4723 1587 813 5899 164 39 10 chr4 39779115 39781211 -162547136 - L1MA5 LINE L1 -62 6940 4790 1130 190 117 70 chr4 39781211 39781569 -162546778 - THE1C LTR MaLR 0 375 1 6943 137 41 6 chr4 39781569 39782684 -162545663 - THE1C-int LTR MaLR 0 1580 427 5290 196 59 30 chr4 39782713 39783951 -162544396 - L1MA5 LINE L1 -2153 4695 3413 2078 103 7 13 chr4 39783951 39784252 -162544095 + AluSc SINE Alu 1 299 -10 5290 196 59 30 chr4 39784252 39784393 -162543954 - L1MA5 LINE L1 -3435 3413 3277 * 6028 236 73 97 chr4 39784364 39787163 -162541184 - L1MA5 LINE L1 -4106 2743 11 413 329 52 73 chr4 39787168 39787593 -162540754 - L1MEd LINE L1 -5702 417 2 4140 243 112 42 chr4 39787716 39787843 -162540504 - L1M4c LINE L1 -1994 4963 4846 18259 33 4 0 chr4 39787843 39790823 -162537524 - L1PA3 LINE L1 0 6155 3168 4140 243 112 42 chr4 39790823 39790895 -162537452 - L1M4c LINE L1 -2111 4846 4780 1995 121 4 0 chr4 39790895 39791206 -162537141 - AluSg SINE Alu 0 312 1 4140 243 112 42 chr4 39791206 39794200 -162534147 - L1M4c LINE L1 -2177 4780 1206 229 260 85 102 chr4 39794265 39794511 -162533836 - L1M4c LINE L1 -5662 1193 952 264 259 80 59 chr4 39794782 39794990 -162533357 - L1M4c LINE L1 -6320 535 16 2231 104 6 19 chr4 39795220 39795536 -162532811 - AluSq SINE Alu -1 312 1 187 333 0 14 chr4 39796405 39796474 -162531873 + MIR SINE MIR 60 127 -81 25 100 0 0 chr4 39796614 39796664 -162531683 + GC_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr4 39797090 39797113 -162531234 + AT_rich Low_complexity Low_complexity 1 23 0 906 225 25 6 chr4 39797117 39797317 -162531030 - MER33 DNA MER1_type -259 65 1 26 0 0 0 chr4 39797453 39797479 -162530868 + AT_rich Low_complexity Low_complexity 1 26 0 2112 84 11 21 chr4 39797509 39797794 -162530553 + AluSq SINE Alu 1 282 -31 4177 170 11 4 chr4 39798096 39798819 -162529528 - L1P3 LINE L1 -5147 728 1 225 304 82 30 chr4 39798913 39799048 -162529299 - MIR SINE MIR -38 224 83 1600 211 54 20 chr4 39799624 39799975 -162528372 + MLT1A1 LTR MaLR 1 363 -2 2019 154 0 10 chr4 39800088 39800400 -162527947 - MER1B DNA MER1_type -30 309 1 4571 203 21 57 chr4 39801112 39802620 -162525727 - L1PB3 LINE L1 -129 6025 4585 342 265 143 7 chr4 39802679 39802826 -162525521 + MLT1I LTR MaLR 5 171 -238 290 264 23 11 chr4 39802986 39803073 -162525274 + MLT1I LTR MaLR 322 409 0 248 227 106 0 chr4 39803962 39804028 -162524319 - MER117 DNA MER1_type -50 147 75 520 334 164 18 chr4 39805213 39805653 -162522694 - L2 LINE L2 -345 2969 2466 556 323 23 5 chr4 39805778 39805998 -162522349 + MIR SINE MIR 15 238 -24 2558 138 35 3 chr4 39806001 39806513 -162521834 + L1P4 LINE L1 5148 5669 -497 1568 115 5 0 chr4 39806629 39806877 -162521470 + AluSg/x SINE Alu 66 314 0 332 135 40 14 chr4 39806877 39806951 -162521396 + L1M4 LINE L1 3953 4028 -2118 * 15560 44 3 15 chr4 39806949 39808926 -162519421 + L1P LINE L1 3168 5120 -1026 576 263 64 20 chr4 39810180 39810431 -162517916 - MIR SINE MIR 0 262 1 530 188 127 30 chr4 39861119 39861316 -162467031 + Charlie5 DNA MER1_type 2362 2577 -35 2247 165 105 0 chr4 39861402 39861784 -162466563 - MSTB LTR MaLR -2 424 3 409 341 112 31 chr4 39861790 39862077 -162466270 - L2 LINE L2 -924 2390 2081 18912 102 20 2 chr4 39862591 39865420 -162462927 - L1P LINE L1 -2165 3981 1104 198 295 76 9 chr4 39865525 39865630 -162462717 + MIR SINE MIR 148 259 -3 224 340 53 40 chr4 39865648 39865798 -162462549 + L3 LINE CR1 1382 1533 -44 203 250 0 0 chr4 39867016 39867064 -162461283 + MIR SINE MIR 157 204 -58 5128 195 23 30 chr4 39867809 39868988 -162459359 + L1 LINE L1 3284 4453 -1693 6122 72 5 5 chr4 39869089 39869865 -162458482 + L1PA7 LINE L1 5379 6154 0 261 240 22 112 chr4 39869925 39870104 -162458243 + L1MC5 LINE L1 7764 7926 -35 523 251 37 59 chr4 39870515 39870702 -162457645 - MIR SINE MIR 0 262 80 296 287 106 0 chr4 39870971 39871065 -162457282 + MIR SINE MIR 94 197 -65 2423 77 0 0 chr4 39871154 39871452 -162456895 + AluY SINE Alu 1 298 -13 231 203 40 0 chr4 39872032 39872106 -162456241 + (TA)n Simple_repeat Simple_repeat 2 78 0 5070 88 16 22 chr4 39872152 39872847 -162455500 + L1PB1 LINE L1 5460 6150 -1 25 75 0 0 chr4 39872847 39872900 -162455447 + AT_rich Low_complexity Low_complexity 1 53 0 253 273 27 36 chr4 39872920 39873051 -162455296 + L1M4 LINE L1 5699 5828 -344 3559 164 73 32 chr4 39873324 39874109 -162454238 + L1MC3 LINE L1 6284 7100 -685 318 286 51 0 chr4 39874123 39874221 -162454126 + MLT1F1 LTR MaLR 35 137 -430 635 212 68 7 chr4 39874222 39874368 -162453979 + L1MC3 LINE L1 7200 7354 -431 2223 69 20 33 chr4 39874385 39874691 -162453656 - L1P3 LINE L1 -489 5665 5364 1094 160 10 0 chr4 39874686 39874892 -162453455 + L1P LINE L1 4696 4903 -1243 * 629 261 85 28 chr4 39875709 39875885 -162452462 - MER5A DNA MER1_type 0 189 4 1350 152 38 60 chr4 39875890 39876026 -162452321 + AluJo SINE Alu 1 138 -174 312 27 0 0 chr4 39876026 39876063 -162452284 + (TAA)n Simple_repeat Simple_repeat 2 38 0 1350 152 38 60 chr4 39876063 39876241 -162452106 + AluJo SINE Alu 138 308 -4 216 0 0 0 chr4 39877543 39877567 -162450780 + (CCG)n Simple_repeat Simple_repeat 1 24 0 200 154 26 51 chr4 39879809 39879848 -162448499 - L2 LINE L2 -620 2694 2657 428 143 13 0 chr4 39880625 39880702 -162447645 + LOR1a LTR ERV1 231 308 -189 991 153 158 18 chr4 39880715 39880943 -162447404 + LOR1a LTR ERV1 238 497 0 433 305 98 66 chr4 39881016 39881321 -162447026 + L2 LINE L2 2935 3249 -23 555 283 0 13 chr4 39882098 39882250 -162446097 + MIR SINE MIR 113 262 0 297 287 4 63 chr4 39882961 39883099 -162445248 - MIR SINE MIR -80 182 53 25 0 0 0 chr4 39883282 39883307 -162445040 + AT_rich Low_complexity Low_complexity 1 25 0 336 305 68 0 chr4 39885012 39885130 -162443217 - MIR SINE MIR -109 153 28 223 271 112 0 chr4 39885181 39885288 -162443059 - L3 LINE CR1 -251 1326 1208 550 286 106 5 chr4 39885308 39885507 -162442840 + L2 LINE L2 2565 2783 -531 714 271 107 57 chr4 39885661 39886044 -162442303 + L2 LINE L2 2836 3237 -76 482 218 213 11 chr4 39888493 39888667 -162439680 - MER3 DNA MER1_type 0 209 1 7779 88 9 12 chr4 39889106 39890411 -162437936 + L1P3 LINE L1 741 2043 -4418 203 289 51 83 chr4 39891235 39891391 -162436956 + L2 LINE L2 2883 3033 -239 * 634 263 74 131 chr4 39891378 39891591 -162436756 + L2 LINE L2 2827 3050 -263 3954 62 8 0 chr4 39891591 39892074 -162436273 - L1PA7 LINE L1 0 6154 5668 284 81 0 0 chr4 39892074 39892111 -162436236 + L1P3 LINE L1 1375 1411 -5050 634 263 74 131 chr4 39892111 39892373 -162435974 + L2 LINE L2 3048 3310 -3 204 260 0 115 chr4 39892402 39892498 -162435849 + L2 LINE L2 3010 3094 -178 769 266 133 42 chr4 39892526 39892909 -162435438 - L2 LINE L2 0 3313 2896 402 153 0 0 chr4 39892909 39892968 -162435379 + Alu SINE Alu 235 293 -19 236 289 284 5 chr4 39892971 39893179 -162435168 - L2 LINE L2 -413 2901 2636 296 305 67 0 chr4 39893981 39894086 -162434261 + L2 LINE L2 3144 3255 -17 12904 145 30 25 chr4 39894921 39897154 -162431193 + L1M1 LINE L1 15 2258 -5307 180 315 208 0 chr4 39897747 39897877 -162430470 - L2 LINE L2 -558 2756 2600 685 275 0 25 chr4 39899085 39899245 -162429102 - MIR3 SINE MIR -21 187 32 1570 216 102 30 chr4 39899370 39899870 -162428477 - MLT1H LTR MaLR -1 548 13 424 302 60 28 chr4 39899893 39900075 -162428272 - MIR SINE MIR -61 201 14 547 209 9 0 chr4 39900583 39900688 -162427659 + MER5A DNA MER1_type 4 109 -80 241 188 267 40 chr4 39900614 39900715 -162427632 - MER5A DNA MER1_type -23 166 43 * 6322 92 26 6 chr4 39900838 39902489 -162425858 - L1PA10 LINE L1 0 6168 4495 5406 96 17 2 chr4 39902591 39903418 -162424929 + L1P LINE L1 1794 2632 -3514 19204 97 6 1 chr4 39903420 39906311 -162422036 + L1P LINE L1 2451 5356 -790 325 294 54 29 chr4 39906621 39906897 -162421450 - L1ME LINE L1 -527 5594 5312 2281 117 3 3 chr4 39907103 39907412 -162420935 + AluSc SINE Alu 1 309 0 412 196 71 54 chr4 39907443 39907555 -162420792 + MER81 DNA DNA 1 114 0 197 340 47 9 chr4 39907595 39907701 -162420646 + L2 LINE L2 2225 2334 -980 767 114 0 0 chr4 39907706 39907811 -162420536 - AluY SINE Alu -77 234 130 187 276 58 35 chr4 39907811 39907898 -162420449 + L2 LINE L2 2326 2414 -900 1264 229 55 25 chr4 39908486 39908849 -162419498 - MLT1A2 LTR MaLR 0 374 1 2211 180 119 17 chr4 39909823 39910295 -162418052 - MLT2B1 LTR ERVL 0 520 1 328 229 9 0 chr4 39910636 39910713 -162417634 - MER91B DNA MER1_type -59 81 1 773 123 0 0 chr4 39911628 39911750 -162416597 - L1MB5 LINE L1 -1 6173 6052 189 184 0 0 chr4 39912894 39912932 -162415415 + L2 LINE L2 3273 3310 -3 186 349 56 40 chr4 39913160 39913286 -162415061 + MER5A DNA MER1_type 33 160 -29 237 355 36 30 chr4 39915027 39915193 -162413154 + MER5A DNA MER1_type 23 189 0 2215 117 0 0 chr4 39915260 39915551 -162412796 - AluSx SINE Alu -21 291 1 24 32 0 0 chr4 39915630 39915661 -162412686 + AT_rich Low_complexity Low_complexity 1 31 0 2050 142 0 3 chr4 39915840 39916135 -162412212 - AluSx SINE Alu -18 294 1 301 288 12 12 chr4 39916135 39916215 -162412132 - L1ME4a LINE L1 -202 5919 5840 413 288 50 18 chr4 39916249 39916468 -162411879 - L1ME4a LINE L1 -370 5751 5526 3725 162 90 28 chr4 39917447 39918257 -162410090 + L1MA9 LINE L1 5402 6261 -51 27 73 0 0 chr4 39918437 39918492 -162409855 + AT_rich Low_complexity Low_complexity 1 55 0 273 290 26 47 chr4 39918574 39918767 -162409580 - L1MEd LINE L1 -4864 1255 1067 260 281 82 14 chr4 39918962 39919108 -162409239 - L1MEd LINE L1 -5045 1074 919 301 289 44 0 chr4 39920223 39920313 -162408034 + MIR SINE MIR 151 244 -18 582 289 82 97 chr4 39920841 39921478 -162406869 - L2 LINE L2 -6 3307 2681 21 36 0 0 chr4 39922790 39922818 -162405529 + AT_rich Low_complexity Low_complexity 1 28 0 1320 187 19 19 chr4 39923750 39924018 -162404329 - MLT1A1 LTR MaLR -95 270 3 281 307 11 11 chr4 39924048 39924136 -162404211 + L2 LINE L2 3184 3271 -1 2554 65 0 0 chr4 39924495 39924802 -162403545 + AluY SINE Alu 1 307 -4 4775 114 50 38 chr4 39925768 39927345 -162401002 + L1PA16 LINE L1 4564 6157 -9 2197 83 0 51 chr4 39927365 39927679 -162400668 + AluSg SINE Alu 1 298 -12 306 0 0 0 chr4 39928215 39928249 -162400098 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr4 39929000 39929021 -162399326 + AT_rich Low_complexity Low_complexity 1 21 0 1470 233 70 86 chr4 39930100 39931026 -162397321 + L1M4 LINE L1 2214 3124 -3022 292 232 18 98 chr4 39931105 39931217 -162397130 - MIR3 SINE MIR -8 200 98 315 361 71 13 chr4 39931274 39931429 -162396918 - MIR SINE MIR -79 183 20 187 303 90 34 chr4 39931923 39932012 -162396335 - L2 LINE L2 -11 3261 3168 805 184 87 4 chr4 39932794 39933013 -162395334 - L1PB4 LINE L1 -4 6152 5897 2276 107 7 0 chr4 39934585 39934895 -162393452 - AluSx SINE Alu 0 312 1 640 237 30 12 chr4 39936400 39936600 -162391747 - MIR SINE MIR 0 262 13 2256 165 41 10 chr4 39937349 39937762 -162390585 + MSTB LTR MaLR 1 426 0 537 294 42 71 chr4 39938696 39938897 -162389450 - MIR SINE MIR -31 231 37 2485 57 3 0 chr4 39938897 39939197 -162389150 - AluY SINE Alu -10 301 1 537 294 42 71 chr4 39939197 39939233 -162389114 - MIR SINE MIR -225 37 1 430 313 74 14 chr4 39939257 39939624 -162388723 - L1ME4a LINE L1 -251 5870 5482 223 241 124 69 chr4 39939955 39940100 -162388247 + MIR SINE MIR 103 255 -7 208 296 148 0 chr4 39940169 39940257 -162388090 + L2 LINE L2 3141 3241 -31 2357 78 10 7 chr4 39940780 39941075 -162387272 + AluSp SINE Alu 1 296 -17 37 99 0 0 chr4 39941097 39941218 -162387129 + AT_rich Low_complexity Low_complexity 1 121 0 710 116 41 7 chr4 39941222 39941369 -162386978 + L1MA7 LINE L1 6136 6287 -4 614 271 66 0 chr4 39942636 39942802 -162385545 - MIR SINE MIR -66 196 20 257 337 42 36 chr4 39942827 39943020 -162385327 - MIR SINE MIR -50 212 19 551 252 144 31 chr4 39943470 39943692 -162384655 - MIR SINE MIR 0 262 16 682 323 24 24 chr4 39943784 39944032 -162384315 + MIR SINE MIR 15 262 0 337 299 119 11 chr4 39944092 39944269 -162384078 - MIR SINE MIR -65 197 2 225 30 30 0 chr4 39946108 39946141 -162382206 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1866 150 0 10 chr4 39946141 39946426 -162381921 - AluJb SINE Alu -28 284 1 963 131 38 19 chr4 39947386 39947546 -162380801 - L1PA10 LINE L1 0 6168 6006 522 176 17 42 chr4 39948379 39948498 -162379849 + L1MA8 LINE L1 6176 6291 0 543 133 0 0 chr4 39949348 39949423 -162378924 - AluJ/FLAM SINE Alu -232 80 6 1719 142 16 13 chr4 39949572 39949875 -162378472 - AluSq SINE Alu -9 304 1 1964 101 4 0 chr4 39949897 39950155 -162378192 - AluSx SINE Alu -10 302 44 704 185 5 116 chr4 39950197 39950386 -162377961 + MIR SINE MIR 45 212 -50 2086 132 14 0 chr4 39950413 39950708 -162377639 - AluSx SINE Alu -13 299 1 440 64 9 55 chr4 39950838 39950947 -162377400 + (TA)n Simple_repeat Simple_repeat 2 105 0 707 170 66 33 chr4 39950948 39951130 -162377217 - L1MB4 LINE L1 -17 6163 5976 208 298 61 61 chr4 39951233 39951364 -162376983 - L2 LINE L2 -197 3116 2986 2065 95 3 43 chr4 39952008 39952312 -162376035 - AluSx SINE Alu -20 292 1 221 191 0 63 chr4 39952439 39952502 -162375845 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 746 209 19 0 chr4 39952711 39952869 -162375478 - MER5B DNA MER1_type -17 161 1 436 308 53 8 chr4 39952872 39953005 -162375342 - MIR3 SINE MIR -6 202 64 236 284 49 0 chr4 39953895 39953976 -162374371 - MIR3 SINE MIR -13 195 111 2088 105 18 7 chr4 39954144 39954430 -162373917 + AluSx SINE Alu 1 289 -23 868 142 108 85 chr4 39954597 39954809 -162373538 - MER20 DNA MER1_type -2 217 1 2034 125 26 7 chr4 39957019 39957324 -162371023 - AluSx SINE Alu -1 311 1 767 63 0 0 chr4 39957734 39957829 -162370518 + AluSp/q SINE Alu 214 308 -5 309 53 0 0 chr4 39958123 39958161 -162370186 - L1P LINE L1 -1673 4473 4436 232 230 18 124 chr4 39958853 39958966 -162369381 - MIR SINE MIR -75 187 87 1264 91 157 19 chr4 39959398 39959608 -162368739 + AluSc SINE Alu 63 301 -8 524 271 69 21 chr4 39959611 39959799 -162368548 - MIR3 SINE MIR -4 204 8 203 345 23 11 chr4 39959847 39959934 -162368413 + MIR SINE MIR 2 89 -173 406 255 66 19 chr4 39960908 39961014 -162367333 + MIR SINE MIR 36 146 -116 196 237 51 17 chr4 39961017 39961076 -162367271 + MIR SINE MIR 105 165 -97 278 247 164 0 chr4 39961903 39961976 -162366371 - L2 LINE L2 -5 3267 3183 26 74 0 0 chr4 39962865 39962919 -162365428 + AT_rich Low_complexity Low_complexity 1 54 0 444 302 180 25 chr4 39963077 39963355 -162364992 - L2 LINE L2 -536 2778 2458 2184 123 0 0 chr4 39963440 39963732 -162364615 + AluSx SINE Alu 1 292 -20 631 299 5 33 chr4 39964130 39964314 -162364033 - MIR3 SINE MIR -14 194 16 1880 145 104 9 chr4 39965583 39965900 -162362447 + MER7A DNA MER2_type 1 345 -1 190 267 0 0 chr4 39967185 39967230 -162361117 - L2 LINE L2 -2 3311 3267 828 228 146 52 chr4 39967345 39967714 -162360633 - MER57A LTR ERV1 -3 400 1 246 250 0 44 chr4 39967763 39967831 -162360516 - L2 LINE L2 -20 3293 3229 191 337 58 0 chr4 39967987 39968073 -162360274 - L2 LINE L2 -213 3059 2969 272 289 141 0 chr4 39968116 39968244 -162360103 + MIR3 SINE MIR 33 178 -30 331 297 155 71 chr4 39968462 39968758 -162359589 + L2 LINE L2 1443 1713 -1601 192 40 0 0 chr4 39968758 39968783 -162359564 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 331 297 155 71 chr4 39968783 39969066 -162359281 + L2 LINE L2 1713 2071 -1243 23 0 0 0 chr4 39969514 39969537 -162358810 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 39969854 39969878 -162358469 + AT_rich Low_complexity Low_complexity 1 24 0 1957 159 85 37 chr4 39970316 39970694 -162357653 + MSTD LTR MaLR 1 396 0 293 273 45 0 chr4 39970890 39970956 -162357391 - MIR SINE MIR -3 259 191 246 239 53 97 chr4 39970966 39971079 -162357268 - MIR SINE MIR -88 120 13 262 217 26 17 chr4 39972197 39972312 -162356035 + (TTATA)n Simple_repeat Simple_repeat 3 118 0 426 220 178 94 chr4 39972799 39972990 -162355357 + MIR SINE MIR 1 207 -55 27 73 0 0 chr4 39973021 39973076 -162355271 + AT_rich Low_complexity Low_complexity 1 55 0 3748 164 30 34 chr4 39973106 39973844 -162354503 + L1MB8 LINE L1 5443 6177 -1 26 0 0 0 chr4 39974379 39974405 -162353942 + AT_rich Low_complexity Low_complexity 1 26 0 371 323 114 47 chr4 39975853 39976214 -162352133 - L2 LINE L2 -332 2981 2585 2322 132 62 94 chr4 39976396 39976475 -162351872 - LTR19A LTR ERV1 -1 485 405 2155 133 7 0 chr4 39976475 39976784 -162351563 + AluSx SINE Alu 1 311 -1 2322 132 62 94 chr4 39976784 39977205 -162351142 - LTR19A LTR ERV1 -81 405 1 516 188 21 0 chr4 39977251 39977347 -162351000 - MER103 DNA DNA -65 101 4 1865 100 4 26 chr4 39977487 39977758 -162350589 + AluSc SINE Alu 45 309 0 832 251 31 35 chr4 39977764 39978023 -162350324 - MLT1B LTR MaLR -90 300 43 2691 114 8 11 chr4 39978024 39978400 -162349947 + THE1C LTR MaLR 1 375 0 4707 126 65 15 chr4 39978400 39979144 -162349203 + THE1C-int LTR MaLR 1 781 -799 688 100 18 9 chr4 39979128 39979238 -162349109 + THE1C-int LTR MaLR 1470 1580 0 * 2846 102 8 8 chr4 39979238 39979611 -162348736 + THE1C LTR MaLR 1 373 -2 287 170 0 0 chr4 39979611 39979658 -162348689 - MLT1B LTR MaLR -342 48 2 2361 92 0 0 chr4 39981067 39981361 -162346986 + AluSq SINE Alu 1 294 -19 2104 127 9 12 chr4 39981585 39981916 -162346431 + MLT2D LTR ERVL 1 330 -84 270 81 0 0 chr4 39982105 39982142 -162346205 + (TC)n Simple_repeat Simple_repeat 1 37 0 497 274 61 6 chr4 39982377 39982541 -162345806 - MIR SINE MIR -3 259 87 2468 74 0 3 chr4 39982541 39982864 -162345483 + L1PA8 LINE L1 5767 6088 -84 255 311 27 0 chr4 39982865 39982939 -162345408 - MIR SINE MIR -173 89 14 712 240 56 22 chr4 39984084 39984263 -162344084 + MER5A DNA MER1_type 4 188 -1 267 176 0 0 chr4 39985204 39985255 -162343092 - MSTB2 LTR MaLR -406 51 1 1285 236 59 44 chr4 39986226 39986616 -162341731 + MSTD LTR MaLR 1 396 0 373 310 54 38 chr4 39986970 39987154 -162341193 + MIR3 SINE MIR 16 202 -6 577 220 50 14 chr4 39987447 39987588 -162340759 - L2 LINE L2 -9 3304 3159 219 346 28 37 chr4 39988420 39988527 -162339820 + MIR SINE MIR 5 110 -152 2747 135 24 7 chr4 39988931 39989352 -162338995 - MSTA LTR MaLR 0 428 1 648 0 0 0 chr4 39989735 39989807 -162338540 + (AATAG)n Simple_repeat Simple_repeat 4 75 0 346 250 14 0 chr4 39989857 39989929 -162338418 - MER5A DNA MER1_type -57 132 60 272 263 0 13 chr4 39989929 39990005 -162338342 - MER112 DNA MER1_type -178 82 8 264 208 28 14 chr4 39990491 39990563 -162337784 + L1MC5 LINE L1 7135 7207 -754 421 242 68 19 chr4 39990667 39990702 -162337645 + L1MC5 LINE L1 7268 7300 -661 4339 57 44 11 chr4 39990702 39990933 -162337414 + L1PA8 LINE L1 5593 5815 -357 2158 122 7 0 chr4 39990933 39991228 -162337119 + AluSp SINE Alu 5 301 -12 4339 57 44 11 chr4 39991228 39991544 -162336803 + L1PA8 LINE L1 5815 6158 -14 421 242 68 19 chr4 39991544 39991669 -162336678 + L1MC5 LINE L1 7300 7436 -525 716 179 107 7 chr4 39991692 39991832 -162336515 - MER5A DNA MER1_type -35 154 1 10749 117 25 4 chr4 39992052 39993633 -162334714 + L1P3 LINE L1 8 1621 -4840 374 133 0 0 chr4 39993750 39993810 -162334537 + L1M1 LINE L1 2632 2691 -4874 1982 118 105 7 chr4 39995091 39995397 -162332950 + MER1B DNA MER1_type 1 336 -1 315 169 28 14 chr4 39995534 39995605 -162332742 - MER33 DNA MER1_type -23 301 230 23 0 0 0 chr4 39995796 39995819 -162332528 + AT_rich Low_complexity Low_complexity 1 23 0 899 231 25 6 chr4 39995823 39996023 -162332324 - MER33 DNA MER1_type -255 69 1 26 0 0 0 chr4 39996159 39996185 -162332162 + AT_rich Low_complexity Low_complexity 1 26 0 2400 67 10 19 chr4 39996215 39996528 -162331819 + AluSq SINE Alu 1 310 -3 239 229 19 48 chr4 39997717 39997822 -162330525 + MER104 DNA Tc2 1 102 -78 1339 171 23 56 chr4 39999233 39999538 -162328809 - L1PB4 LINE L1 0 6156 5862 187 322 64 64 chr4 39999751 39999953 -162328394 + L2 LINE L2 2889 3090 -182 * 603 320 60 41 chr4 39999951 40000270 -162328077 - L2 LINE L2 -2 3270 2946 754 317 35 9 chr4 40000317 40000544 -162327803 - MIR SINE MIR -26 236 4 2235 151 3 3 chr4 40000579 40000944 -162327403 + MER47A DNA MER2_type 1 365 -1 285 299 0 19 chr4 40000944 40001051 -162327296 + (TATATG)n Simple_repeat Simple_repeat 3 107 0 600 256 35 25 chr4 40001170 40001371 -162326976 + MIR SINE MIR 2 204 -58 313 316 9 9 chr4 40001406 40001520 -162326827 - L2 LINE L2 -595 2719 2606 2378 171 14 7 chr4 40001611 40002032 -162326315 + MSTB LTR MaLR 1 424 -2 4363 179 34 22 chr4 40004287 40005392 -162322955 - L1MB8 LINE L1 0 6178 5048 2240 100 7 3 chr4 40005392 40005692 -162322655 + AluSq SINE Alu 1 301 -12 4363 179 34 22 chr4 40005692 40006381 -162321966 - L1MB8 LINE L1 -1130 5048 4369 486 183 69 8 chr4 40006406 40006537 -162321810 - L1MB8 LINE L1 -1741 4405 4267 542 167 56 21 chr4 40006546 40006690 -162321657 - L1MB8 LINE L1 -3130 3016 2868 335 298 21 85 chr4 40006844 40007079 -162321268 - L1MEc LINE L1 -4387 2009 1790 321 289 79 0 chr4 40007154 40007268 -162321079 + MER91B DNA MER1_type 12 134 -56 333 293 20 20 chr4 40007301 40007400 -162320947 + MER91B DNA MER1_type 90 188 -2 276 100 0 0 chr4 40007840 40007880 -162320467 + (T)n Simple_repeat Simple_repeat 1 40 0 351 0 0 0 chr4 40007914 40007953 -162320394 + (TA)n Simple_repeat Simple_repeat 1 39 0 252 0 0 0 chr4 40007952 40007980 -162320367 + (CA)n Simple_repeat Simple_repeat 2 29 0 * 465 140 0 70 chr4 40008375 40008452 -162319895 + MLT1A1 LTR MaLR 1 71 -294 2087 117 56 39 chr4 40008452 40008810 -162319537 - THE1B LTR MaLR 0 364 1 465 140 0 70 chr4 40008810 40008832 -162319515 + MLT1A1 LTR MaLR 71 93 -272 888 165 44 6 chr4 40008841 40009023 -162319324 + MSTA LTR MaLR 238 426 -2 * 1341 182 0 0 chr4 40009023 40009242 -162319105 + MLT1A1 LTR MaLR 145 363 -2 2071 138 29 16 chr4 40009533 40009911 -162318436 + MSTD LTR MaLR 1 383 -13 351 257 67 100 chr4 40011537 40011747 -162316600 - L1MC4 LINE L1 -12 8030 7828 1337 146 87 150 chr4 40011803 40012377 -162315970 - L1ME2 LINE L1 -14 6150 5613 882 198 14 55 chr4 40013159 40013376 -162314971 - MER8 DNA MER2_type 0 239 32 1174 125 27 0 chr4 40013376 40013560 -162314787 + L1MB1 LINE L1 5974 6162 -6 223 289 12 36 chr4 40013960 40014043 -162314304 - L2 LINE L2 -2 3311 3231 506 261 106 6 chr4 40014446 40014607 -162313740 - MIR SINE MIR -45 217 41 527 253 124 48 chr4 40015329 40015701 -162312646 - HAL1 LINE L1 -6 2501 2102 725 211 142 37 chr4 40015905 40016285 -162312062 - HAL1 LINE L1 -1079 1428 1009 1172 113 0 0 chr4 40016330 40016489 -162311858 - AluSg/x SINE Alu -10 300 142 1410 272 74 57 chr4 40016560 40017292 -162311055 - HAL1 LINE L1 -1636 871 128 310 296 0 56 chr4 40017321 40017429 -162310918 + L1MC4 LINE L1 6615 6716 -1326 27 29 0 0 chr4 40017607 40017641 -162310706 + AT_rich Low_complexity Low_complexity 1 34 0 2960 110 14 20 chr4 40017935 40018426 -162309921 - L1MA2 LINE L1 -222 6082 5595 * 5460 131 26 45 chr4 40018423 40019234 -162309113 - L1PA13 LINE L1 0 6163 5338 6602 48 37 6 chr4 40019234 40020160 -162308187 + L1PA7 LINE L1 5202 6154 0 5460 131 26 45 chr4 40020160 40021220 -162307127 - L1PA13 LINE L1 -825 5338 4320 3242 131 6 20 chr4 40021220 40021764 -162306583 - L1PB1 LINE L1 0 6854 6319 12795 173 36 52 chr4 40021766 40024344 -162304003 - L1PB1 LINE L1 -593 6261 3759 2316 82 3 10 chr4 40024344 40024649 -162303698 - AluY SINE Alu -8 303 1 12795 173 36 52 chr4 40024649 40025631 -162302716 - L1PB1 LINE L1 -3095 3759 2762 2163 119 9 24 chr4 40025631 40025968 -162302379 + MER1B DNA MER1_type 1 332 -7 744 176 7 0 chr4 40025969 40026122 -162302225 - L1PB1 LINE L1 -4081 2768 2615 * 8913 195 63 5 chr4 40026117 40027864 -162300483 - L1PB1 LINE L1 -4935 1904 55 7649 218 41 20 chr4 40027935 40029715 -162298632 - L1M1 LINE L1 -697 7027 5286 2327 104 48 22 chr4 40029715 40030070 -162298277 - THE1B LTR MaLR 0 364 1 7649 218 41 20 chr4 40030070 40032505 -162295842 - L1M1 LINE L1 -2438 5286 2612 12925 154 28 72 chr4 40032605 40033044 -162295303 - L1M1 LINE L1 -4932 2633 2176 10324 61 43 14 chr4 40033044 40034391 -162293956 - SVA Other Other 0 1386 1 12925 154 28 72 chr4 40034391 40036704 -162291643 - L1M1 LINE L1 -5389 2176 3 2164 102 10 16 chr4 40036828 40037131 -162291216 - AluSc SINE Alu -8 301 1 423 153 0 0 chr4 40037184 40037256 -162291091 + AluS SINE Alu 2 73 -239 1352 148 4 13 chr4 40037388 40037618 -162290729 + AluSp SINE Alu 86 313 0 188 336 92 25 chr4 40037626 40037745 -162290602 - MIR SINE MIR -115 147 21 1480 207 29 31 chr4 40037788 40038174 -162290173 - MLT1B LTR MaLR -5 385 1 210 298 58 29 chr4 40038175 40038279 -162290068 - L2 LINE L2 -1366 1948 1842 476 161 11 11 chr4 40038463 40038556 -162289791 - MSTD LTR MaLR -12 384 292 221 356 30 30 chr4 40038585 40038720 -162289627 + MIR SINE MIR 13 147 -115 603 174 19 3 chr4 40038724 40038866 -162289481 - MSTC LTR MaLR -218 147 1 710 268 208 52 chr4 40039141 40039507 -162288840 - MLT1G1 LTR MaLR -11 584 162 1667 186 29 14 chr4 40039507 40039852 -162288495 + MLT1A1 LTR MaLR 1 350 -15 709 271 6 11 chr4 40039842 40040023 -162288324 - MLT1G1 LTR MaLR -415 180 1 * 202 158 0 26 chr4 40040035 40040073 -162288274 + (CTATA)n Simple_repeat Simple_repeat 2 38 0 215 254 31 27 chr4 40040701 40040842 -162287505 + MER5A DNA MER1_type 4 189 0 228 297 10 20 chr4 40041004 40041105 -162287242 - Charlie7 DNA MER1_type -2512 100 1 2194 78 25 3 chr4 40041471 40041753 -162286594 + AluSq SINE Alu 1 288 -25 381 95 0 0 chr4 40041753 40041816 -162286531 + (TA)n Simple_repeat Simple_repeat 2 64 0 11968 182 16 20 chr4 40042120 40045103 -162283244 - L1MA1 LINE L1 0 7721 4839 2379 100 0 0 chr4 40045103 40045413 -162282934 - AluY SINE Alu -1 310 1 11968 182 16 20 chr4 40045413 40046519 -162281828 - L1MA1 LINE L1 -2882 4839 3730 5454 200 86 7 chr4 40046544 40048068 -162280279 - L1MA1 LINE L1 -5906 1659 16 1225 211 131 21 chr4 40048188 40048525 -162279822 - MLT1A2 LTR MaLR 0 374 1 1660 213 117 35 chr4 40048677 40049166 -162279181 - MLT1F LTR MaLR 0 542 14 198 0 0 0 chr4 40049410 40049432 -162278915 + (GGGAA)n Simple_repeat Simple_repeat 4 25 0 7161 142 37 7 chr4 40051053 40052034 -162276313 + Tigger3b DNA MER2_type 1 1025 -2003 2354 56 3 36 chr4 40052034 40052338 -162276009 + AluY SINE Alu 1 294 -17 7161 142 37 7 chr4 40052338 40052534 -162275813 + Tigger3b DNA MER2_type 1025 1214 -17 336 233 75 42 chr4 40054315 40054435 -162273912 - MIR SINE MIR -15 247 124 2085 140 3 7 chr4 40054786 40055094 -162273253 + AluSx SINE Alu 1 307 -5 2034 127 0 25 chr4 40055190 40055506 -162272841 + AluSx SINE Alu 1 308 -4 249 311 27 61 chr4 40055596 40055744 -162272603 - MIR SINE MIR -2 260 118 3251 203 119 9 chr4 40055982 40056106 -162272241 - MER63C DNA MER1_type -138 922 813 2577 59 0 0 chr4 40056106 40056411 -162271936 + AluY SINE Alu 1 305 -6 3251 203 119 9 chr4 40056411 40057111 -162271236 - MER63C DNA MER1_type -247 813 2 871 154 74 12 chr4 40057438 40057600 -162270747 + L1PB1 LINE L1 5972 6143 -8 38 39 0 0 chr4 40057605 40057657 -162270690 + AT_rich Low_complexity Low_complexity 1 52 0 1912 208 19 8 chr4 40059022 40059383 -162268964 - MLT1A1 LTR MaLR 0 365 1 245 329 24 12 chr4 40059423 40059505 -162268842 - L2 LINE L2 -1 3312 3230 859 210 6 6 chr4 40059737 40059894 -162268453 + FRAM SINE Alu 1 157 -19 219 283 78 20 chr4 40060186 40060328 -162268019 - MIR SINE MIR -58 150 41 753 242 88 23 chr4 40060328 40060543 -162267804 + MIR SINE MIR 28 256 -6 1163 184 60 17 chr4 40060810 40061044 -162267303 - MLT1F1 LTR MaLR -2 565 322 953 184 18 0 chr4 40061131 40061294 -162267053 - MER58B DNA MER1_type -2 339 174 347 326 89 42 chr4 40062275 40062465 -162265882 + MIR SINE MIR 46 244 -18 339 213 0 0 chr4 40062474 40062554 -162265793 + (CACCAT)n Simple_repeat Simple_repeat 2 81 0 204 40 0 0 chr4 40062562 40062587 -162265760 + (CA)n Simple_repeat Simple_repeat 1 25 0 2178 176 14 102 chr4 40063467 40063869 -162264478 + LTR32 LTR ERVL 15 366 -105 2262 96 10 0 chr4 40063869 40064162 -162264185 + AluSx SINE Alu 1 296 -16 2178 176 14 102 chr4 40064162 40064260 -162264087 + LTR32 LTR ERVL 366 471 0 591 186 16 0 chr4 40064367 40064491 -162263856 - L1MA6 LINE L1 -74 6226 6101 399 244 34 42 chr4 40066146 40066265 -162262082 - MIR SINE MIR -131 131 14 2521 157 26 47 chr4 40066265 40066731 -162261616 - LTR32 LTR ERVL -2 469 14 1075 185 39 19 chr4 40067033 40067238 -162261109 + MER3 DNA MER1_type 1 209 0 228 237 43 108 chr4 40067372 40067465 -162260882 + L2 LINE L2 3186 3272 0 290 190 10 70 chr4 40067624 40067724 -162260623 - HAL1 LINE L1 -133 2374 2281 2780 235 92 43 chr4 40067823 40068054 -162260293 - HAL1 LINE L1 -368 2139 1921 2309 38 45 21 chr4 40068054 40068343 -162260004 + AluY SINE Alu 1 296 -15 2780 235 92 43 chr4 40068343 40069156 -162259191 - HAL1 LINE L1 -586 1921 1044 2094 129 10 3 chr4 40069340 40069651 -162258696 - AluSp SINE Alu 0 313 1 725 286 127 40 chr4 40069706 40070084 -162258263 - HAL1 LINE L1 -1884 623 213 206 227 0 0 chr4 40070536 40070580 -162257767 + (ATG)n Simple_repeat Simple_repeat 3 46 0 184 320 82 0 chr4 40070587 40070684 -162257663 - MIR SINE MIR -3 259 155 3794 92 21 2 chr4 40070684 40071165 -162257182 + LTR2B LTR ERV1 1 490 0 2460 103 44 16 chr4 40071165 40071553 -162256794 + Harlequin LTR ERV1 1 399 -6497 750 138 21 35 chr4 40071524 40071669 -162256678 + HERVE LTR ERV1 255 397 -7416 * 4803 66 34 6 chr4 40071649 40072273 -162256074 + HERVE LTR ERV1 263 903 -5993 * 7191 56 16 17 chr4 40072258 40073262 -162255085 + HERVE LTR ERV1 1572 2574 -4322 4691 67 30 0 chr4 40073252 40073847 -162254500 + HERVE LTR ERV1 3342 3954 -2942 * 17509 129 11 8 chr4 40073832 40076476 -162251871 + HERVE LTR ERV1 4246 6896 0 3919 79 21 2 chr4 40076476 40076957 -162251390 + LTR2B LTR ERV1 1 490 0 205 246 70 0 chr4 40076957 40077014 -162251333 - MIR SINE MIR -104 158 98 187 114 45 0 chr4 40080946 40080990 -162247357 + CT-rich Low_complexity Low_complexity 3 48 0 2389 89 3 0 chr4 40081646 40081949 -162246398 - AluSp SINE Alu -9 304 1 1967 101 0 0 chr4 40082671 40082928 -162245419 + AluSx SINE Alu 1 257 -55 298 59 44 29 chr4 40082930 40082998 -162245349 + (TA)n Simple_repeat Simple_repeat 1 69 0 272 192 0 0 chr4 40083122 40083174 -162245173 + AluSx SINE Alu 256 307 -1 902 182 0 28 chr4 40084023 40084204 -162244143 - MER104 DNA MER2_type 0 180 5 193 314 65 65 chr4 40084305 40084458 -162243889 - L2 LINE L2 -35 3278 3126 2575 106 43 3 chr4 40084472 40084822 -162243525 + THE1B LTR MaLR 1 364 0 2022 115 14 0 chr4 40084846 40085146 -162243201 - AluSx SINE Alu 0 304 1 319 346 87 16 chr4 40085193 40085378 -162242969 - L2 LINE L2 -225 3047 2850 329 328 187 11 chr4 40085521 40085783 -162242564 + L2 LINE L2 2985 3292 -21 242 298 89 70 chr4 40085880 40086038 -162242309 + MIR3 SINE MIR 18 178 -30 260 268 14 14 chr4 40086576 40086647 -162241700 + L2 LINE L2 3200 3270 -2 2213 103 13 3 chr4 40086753 40087063 -162241284 - AluSq SINE Alu 0 313 1 1641 178 143 6 chr4 40087862 40088183 -162240164 - MLT1A1 LTR MaLR 0 365 1 435 147 0 0 chr4 40088912 40088987 -162239360 + MER5A DNA MER1_type 1 75 -114 7899 15 1 0 chr4 40088987 40090117 -162238230 + L1PA3 LINE L1 5036 6166 0 292 232 232 30 chr4 40090119 40090218 -162238129 + MER5A DNA MER1_type 68 186 -3 182 298 67 29 chr4 40091967 40092071 -162236276 - L2 LINE L2 -313 2959 2852 2989 218 52 8 chr4 40092156 40092775 -162235572 + MER82 DNA MER2_type 1 646 -7 360 317 34 58 chr4 40092886 40093091 -162235256 - L2 LINE L2 -556 2758 2559 311 300 0 0 chr4 40093294 40093364 -162234983 + L2 LINE L2 3200 3269 -3 999 204 53 22 chr4 40093691 40094128 -162234219 - MLT1A2 LTR MaLR 0 390 2 2265 115 0 3 chr4 40094491 40094804 -162233543 + AluSq SINE Alu 1 312 -1 260 241 23 23 chr4 40094845 40094932 -162233415 - MIR SINE MIR -8 254 168 2312 111 0 0 chr4 40095001 40095307 -162233040 - AluSq SINE Alu -7 306 1 197 222 0 0 chr4 40095353 40095389 -162232958 + MER5A DNA MER1_type 52 87 -102 285 75 0 0 chr4 40095456 40095496 -162232851 + (CA)n Simple_repeat Simple_repeat 2 41 0 3480 75 18 9 chr4 40096229 40096669 -162231678 + MLT2A1 LTR ERVL 1 444 0 1987 139 0 7 chr4 40096767 40097061 -162231286 - AluSx SINE Alu 0 312 21 2107 121 10 3 chr4 40097085 40097382 -162230965 - AluSx SINE Alu -13 299 1 264 30 0 0 chr4 40097562 40097595 -162230752 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 465 226 107 60 chr4 40097666 40097834 -162230513 + MIR SINE MIR 70 245 -17 608 274 68 26 chr4 40097852 40098086 -162230261 - MIR SINE MIR -17 245 2 195 42 0 0 chr4 40098151 40098175 -162230172 + (TC)n Simple_repeat Simple_repeat 1 24 0 258 211 19 0 chr4 40098221 40098273 -162230074 + L2 LINE L2 3197 3249 -23 189 237 0 0 chr4 40099351 40099389 -162228958 - MIR SINE MIR -63 145 108 1244 150 5 38 chr4 40099391 40099604 -162228743 + AluJb SINE Alu 86 291 -21 2305 99 0 3 chr4 40099680 40099997 -162228350 - AluSq SINE Alu 0 313 1 2427 41 3 60 chr4 40100478 40100795 -162227552 - AluY SINE Alu -12 299 1 2302 111 3 0 chr4 40101853 40102027 -162226320 - AluSx SINE Alu -4 308 131 2287 67 0 0 chr4 40102027 40102297 -162226050 - AluY SINE Alu -4 307 38 2302 111 3 0 chr4 40102297 40102429 -162225918 - AluSx SINE Alu -181 131 1 23 33 0 0 chr4 40102545 40102575 -162225772 + AT_rich Low_complexity Low_complexity 1 30 0 279 0 0 0 chr4 40103053 40103084 -162225263 + (A)n Simple_repeat Simple_repeat 1 31 0 480 295 35 12 chr4 40103301 40103474 -162224873 - MIR SINE MIR -40 222 46 2232 103 3 3 chr4 40103492 40103784 -162224563 - AluSx SINE Alu -20 292 1 3050 119 65 14 chr4 40103993 40104498 -162223849 - LTR26B LTR ERV1 0 531 1 356 237 122 15 chr4 40104654 40104785 -162223562 + MIR SINE MIR 118 262 0 2346 106 0 0 chr4 40104789 40105091 -162223256 + AluSx SINE Alu 3 304 -8 258 32 0 0 chr4 40105575 40105606 -162222741 + (TG)n Simple_repeat Simple_repeat 2 32 0 412 256 80 0 chr4 40106150 40106287 -162222060 - MIR SINE MIR -12 250 103 244 196 179 71 chr4 40106611 40106723 -162221624 - MLT1K LTR MaLR -19 569 446 1950 166 0 10 chr4 40106731 40107039 -162221308 + AluJb SINE Alu 1 305 -7 283 237 194 0 chr4 40107483 40107596 -162220751 - MIR SINE MIR -64 144 50 1510 192 7 14 chr4 40108606 40108892 -162219455 - AluJb SINE Alu 0 312 29 186 133 0 0 chr4 40109299 40109329 -162219018 + (CA)n Simple_repeat Simple_repeat 2 31 0 2112 208 40 99 chr4 40109386 40109560 -162218787 + L1MC4a LINE L1 6170 6353 -1455 1182 78 0 0 chr4 40109560 40109740 -162218607 + (CA)n Simple_repeat Simple_repeat 1 180 0 2112 208 40 99 chr4 40109740 40110272 -162218075 + L1MC4a LINE L1 6353 6834 -974 1944 154 7 0 chr4 40110279 40110565 -162217782 + AluSx SINE Alu 22 309 -3 807 187 42 6 chr4 40110575 40110871 -162217476 + GA-rich Low_complexity Low_complexity 1 306 0 249 108 0 0 chr4 40110898 40110935 -162217412 + (GGA)n Simple_repeat Simple_repeat 3 39 0 * 497 112 40 24 chr4 40110928 40111053 -162217294 + GA-rich Low_complexity Low_complexity 4 130 0 2096 251 65 15 chr4 40111134 40111177 -162217170 + L1MC4a LINE L1 7102 7141 -667 986 238 27 80 chr4 40111177 40111589 -162216758 + MLT1B LTR MaLR 1 390 0 2096 251 65 15 chr4 40111589 40112218 -162216129 + L1MC4a LINE L1 7141 7808 0 13545 124 47 48 chr4 40112226 40112366 -162215981 + Tigger1 DNA MER2_type 1 140 -2278 2165 119 0 31 chr4 40112366 40112686 -162215661 - AluSg SINE Alu 0 310 1 13545 124 47 48 chr4 40112686 40113445 -162214902 + Tigger1 DNA MER2_type 140 898 -1520 1964 141 53 0 chr4 40113445 40113729 -162214618 - AluSx SINE Alu -13 299 1 13545 124 47 48 chr4 40113729 40115248 -162213099 + Tigger1 DNA MER2_type 898 2418 0 2493 71 0 7 chr4 40116692 40117000 -162211347 + AluY SINE Alu 1 306 -5 231 61 0 0 chr4 40117121 40117154 -162211193 + (A)n Simple_repeat Simple_repeat 1 33 0 2268 110 0 3 chr4 40117154 40117454 -162210893 + AluSx SINE Alu 3 301 -11 195 204 0 0 chr4 40117724 40117768 -162210579 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr4 40118062 40118083 -162210264 + AT_rich Low_complexity Low_complexity 1 21 0 204 216 0 0 chr4 40118244 40118281 -162210066 + (CATCC)n Simple_repeat Simple_repeat 3 39 0 451 139 23 0 chr4 40118347 40118433 -162209914 + MSTA LTR MaLR 160 247 -181 561 264 82 24 chr4 40120914 40121122 -162207225 - MIR SINE MIR 0 262 43 365 297 28 33 chr4 40121916 40122098 -162206249 + MER5A DNA MER1_type 1 181 -8 2229 110 0 0 chr4 40122299 40122600 -162205747 + AluSx SINE Alu 1 301 0 425 268 119 43 chr4 40122931 40123008 -162205339 - L1MC4a LINE L1 -341 5780 5710 1569 150 9 98 chr4 40123008 40123335 -162205012 - AluJo SINE Alu -13 299 2 425 268 119 43 chr4 40123335 40123639 -162204708 - L1MC4a LINE L1 -411 5710 5501 2230 90 4 0 chr4 40123666 40123973 -162204374 - AluSp SINE Alu 0 312 5 2318 90 0 0 chr4 40123989 40124279 -162204068 - AluSg SINE Alu -20 290 1 449 227 55 16 chr4 40124296 40124388 -162203959 - MER94 DNA DNA -1 133 33 1734 151 4 15 chr4 40124388 40124659 -162203688 - AluJo SINE Alu -34 278 11 449 227 55 16 chr4 40124659 40124694 -162203653 - MER94 DNA DNA -101 33 1 232 243 81 0 chr4 40124731 40124805 -162203542 - L1P5 LINE L1 -721 5435 5356 626 246 22 28 chr4 40125701 40125880 -162202467 - MIR SINE MIR -84 178 1 2291 108 0 16 chr4 40125973 40126289 -162202058 + AluY SINE Alu 1 311 0 342 272 10 29 chr4 40127486 40127589 -162200758 + L2 LINE L2 3189 3289 -24 2300 102 0 3 chr4 40127596 40127899 -162200448 - AluSg SINE Alu -8 302 1 233 279 90 18 chr4 40128243 40128354 -162199993 + MIR SINE MIR 58 176 -86 2503 53 0 31 chr4 40129204 40129525 -162198822 - AluY SINE Alu 0 311 1 253 285 118 14 chr4 40129801 40129940 -162198407 - MIR3 SINE MIR -45 163 13 1668 139 37 3 chr4 40130051 40130346 -162198001 + L1MA8 LINE L1 5026 5330 -816 298 97 83 56 chr4 40130338 40130410 -162197937 + L1MA8 LINE L1 5982 6055 -236 * 1283 130 40 0 chr4 40130474 40130697 -162197650 + L1MA8 LINE L1 6060 6291 0 5375 146 36 10 chr4 40130717 40130992 -162197355 + L1MA8 LINE L1 5321 5587 -704 2072 138 7 7 chr4 40130992 40131297 -162197050 + AluSx SINE Alu 1 305 -7 5375 146 36 10 chr4 40131297 40131961 -162196386 + L1MA8 LINE L1 5587 6285 -6 505 248 81 50 chr4 40133042 40133264 -162195083 + MIR SINE MIR 33 261 -1 353 301 71 16 chr4 40134111 40134294 -162194053 + MIR SINE MIR 70 262 0 420 302 123 0 chr4 40134665 40134877 -162193470 - MIR SINE MIR 0 262 25 2565 44 0 35 chr4 40135152 40135470 -162192877 - AluY SINE Alu -4 307 1 374 242 130 101 chr4 40135717 40135994 -162192353 + MER102b DNA MER1_type 56 340 -1 2022 150 6 10 chr4 40136590 40136903 -162191444 + AluJb SINE Alu 1 312 0 2136 133 7 0 chr4 40136963 40137265 -162191082 - AluSq SINE Alu -9 304 1 2390 106 0 0 chr4 40137922 40138234 -162190113 + AluSx SINE Alu 1 312 0 489 295 116 11 chr4 40138487 40138677 -162189670 - MIR SINE MIR 0 262 53 493 313 10 21 chr4 40139078 40139270 -162189077 + MLT1J1 LTR MaLR 4 193 -253 394 274 80 34 chr4 40139298 40139473 -162188874 + MLT1J2 LTR MaLR 268 450 0 1859 166 7 3 chr4 40140139 40140435 -162187912 + AluJo SINE Alu 1 297 -15 830 263 5 18 chr4 40140800 40141024 -162187323 - MIR SINE MIR -41 221 1 2552 64 0 0 chr4 40141109 40141407 -162186940 + AluY SINE Alu 1 298 -13 226 316 20 31 chr4 40141851 40141949 -162186398 - L2 LINE L2 -3 3269 3173 232 264 14 42 chr4 40142481 40142553 -162185794 + L2 LINE L2 3242 3311 -2 488 280 50 33 chr4 40142717 40142899 -162185448 - MIR SINE MIR -69 193 9 982 193 14 45 chr4 40142929 40143152 -162185195 + MER20 DNA MER1_type 1 216 -3 22 35 0 0 chr4 40143306 40143335 -162185012 + AT_rich Low_complexity Low_complexity 1 29 0 2442 92 0 0 chr4 40143898 40144204 -162184143 + AluY SINE Alu 1 306 -5 546 246 91 82 chr4 40144710 40144942 -162183405 - MER106B DNA MER1_type -2 1057 1 1456 209 75 3 chr4 40145300 40145621 -162182726 + MER2 DNA MER2_type 1 344 -1 264 271 0 0 chr4 40146026 40146085 -162182262 + (CA)n Simple_repeat Simple_repeat 2 60 0 549 311 38 4 chr4 40146609 40146844 -162181503 - MIR SINE MIR -4 258 16 1453 192 177 85 chr4 40147335 40148052 -162180295 + MER21B LTR ERV1 21 871 -60 326 236 36 64 chr4 40149114 40149222 -162179125 + MIR SINE MIR 64 170 -92 2175 92 18 11 chr4 40149222 40149555 -162178792 - AluSx SINE Alu 0 335 1 326 236 36 64 chr4 40149555 40149585 -162178762 + MIR SINE MIR 170 199 -63 400 275 17 0 chr4 40149680 40149800 -162178547 + MIR SINE MIR 5 126 -136 390 258 177 29 chr4 40150399 40150608 -162177739 + MIR SINE MIR 1 240 -22 918 203 84 4 chr4 40151183 40151410 -162176937 + L1MB3 LINE L1 5932 6176 -7 1903 158 17 0 chr4 40151522 40151820 -162176527 - AluJo SINE Alu -9 303 1 327 244 42 50 chr4 40151820 40151939 -162176408 - MIR SINE MIR -97 165 48 205 188 0 47 chr4 40153746 40153810 -162174537 + (TTAAA)n Simple_repeat Simple_repeat 3 63 0 642 229 63 58 chr4 40154692 40154897 -162173450 + MIR SINE MIR 1 206 -56 378 211 90 75 chr4 40154911 40155044 -162173303 - L2 LINE L2 -12 3301 3167 313 278 26 43 chr4 40155141 40155256 -162173091 - L2 LINE L2 -1 3271 3159 1620 137 7 50 chr4 40155594 40155872 -162172475 + AluSx SINE Alu 36 301 -11 555 157 0 0 chr4 40155970 40156053 -162172294 + AluS SINE Alu 2 84 -229 1043 137 43 0 chr4 40156350 40156511 -162171836 + LTR28 LTR ERV1 1 168 -852 1042 188 80 80 chr4 40156508 40156869 -162171478 + LTR27 LTR ERV1 276 636 0 * 257 219 49 12 chr4 40157712 40157794 -162170553 + MIR SINE MIR 69 153 -109 1771 116 51 18 chr4 40157833 40158108 -162170239 + MER4C LTR ERV1 8 291 -174 936 166 0 6 chr4 40158253 40158410 -162169937 + MER4C LTR ERV1 310 465 0 732 229 60 37 chr4 40158423 40158641 -162169706 + MLT1G1 LTR MaLR 75 297 -298 666 199 41 34 chr4 40158700 40158846 -162169501 + MLT1G1 LTR MaLR 447 593 -2 243 258 30 15 chr4 40158847 40158913 -162169434 + MIR SINE MIR 158 224 -38 1227 163 0 28 chr4 40158956 40159171 -162169176 - MER3 DNA MER1_type 0 209 1 296 225 188 59 chr4 40159445 40159801 -162168546 + L1ME4a LINE L1 5707 6108 -13 25 0 0 0 chr4 40160036 40160061 -162168286 + AT_rich Low_complexity Low_complexity 1 25 0 1864 149 203 20 chr4 40160075 40160470 -162167877 + MLT1C LTR MaLR 1 467 0 3249 157 48 21 chr4 40160697 40161302 -162167045 + L1MB1 LINE L1 5543 6163 -5 1514 205 16 93 chr4 40161338 40161767 -162166580 + MSTD LTR MaLR 1 396 0 203 161 48 32 chr4 40161962 40162024 -162166323 + A-rich Low_complexity Low_complexity 1 63 0 963 180 126 75 chr4 40162450 40162715 -162165632 + AluJb SINE Alu 1 282 -20 183 80 0 0 chr4 40162715 40162740 -162165607 + (CA)n Simple_repeat Simple_repeat 1 25 0 963 180 126 75 chr4 40162740 40162752 -162165595 + AluJb SINE Alu 282 292 -10 450 205 0 0 chr4 40162778 40162856 -162165491 + FLAM_A SINE Alu 21 98 -44 624 225 6 38 chr4 40163251 40163411 -162164936 - MIR SINE MIR -72 190 36 450 195 0 0 chr4 40164381 40164468 -162163879 + MIR SINE MIR 62 148 -60 207 0 0 0 chr4 40164871 40164894 -162163453 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 396 181 0 0 chr4 40165013 40165085 -162163262 + MIR SINE MIR 71 142 -66 312 188 30 143 chr4 40165205 40165338 -162163009 + MER46C DNA MER2_type 12 129 -209 2580 65 0 0 chr4 40165544 40165851 -162162496 + AluY SINE Alu 1 307 -4 1966 134 11 3 chr4 40166062 40166374 -162161973 - AluSx SINE Alu 0 314 1 351 305 115 5 chr4 40168341 40168541 -162159806 - MIR SINE MIR -33 229 8 2115 86 45 38 chr4 40168890 40169182 -162159165 + AluSc SINE Alu 1 294 -15 374 244 59 37 chr4 40171176 40171311 -162157036 + MIR SINE MIR 74 211 -51 205 270 32 16 chr4 40171340 40171403 -162156944 - L2 LINE L2 -72 3200 3137 873 227 36 20 chr4 40172030 40172281 -162156066 - MIR SINE MIR 0 262 8 7058 65 5 29 chr4 40172994 40174847 -162153500 + SVA Other Other 15 1385 -1 192 77 0 0 chr4 40174850 40174876 -162153471 + (A)n Simple_repeat Simple_repeat 1 26 0 2217 97 0 41 chr4 40175346 40175665 -162152682 - AluSc SINE Alu -3 306 1 771 207 63 40 chr4 40175819 40176041 -162152306 - MER21B LTR ERV1 -111 752 526 4078 129 16 10 chr4 40176043 40176665 -162151682 + MER41B LTR ERV1 1 626 -9 1337 229 45 64 chr4 40176621 40177223 -162151124 - MER21B LTR ERV1 -295 568 13 * 2164 134 0 6 chr4 40177969 40178283 -162150064 - AluJo SINE Alu 0 312 1 199 250 24 71 chr4 40180196 40180280 -162148067 + MIR SINE MIR 110 189 -73 524 169 61 40 chr4 40180618 40180766 -162147581 + MER5A DNA MER1_type 39 189 0 328 260 106 19 chr4 40181029 40181133 -162147214 + L2 LINE L2 3160 3272 0 299 277 62 18 chr4 40181634 40181746 -162146601 - L2 LINE L2 -1 3271 3155 303 253 24 24 chr4 40181799 40181882 -162146465 + MIR3 SINE MIR 108 190 -18 230 265 39 49 chr4 40182099 40182201 -162146146 + MIR3 SINE MIR 101 201 -7 2663 114 28 37 chr4 40182442 40182480 -162145867 - MSTA LTR MaLR -3 425 388 2099 110 0 23 chr4 40182480 40182779 -162145568 + AluSx SINE Alu 1 292 -20 2663 114 28 37 chr4 40182779 40183169 -162145178 - MSTA LTR MaLR -40 388 1 259 256 124 16 chr4 40183483 40183612 -162144735 - MIR SINE MIR 0 262 120 756 254 125 39 chr4 40184272 40184464 -162143883 - MER46C DNA MER2_type 0 338 107 2256 91 10 7 chr4 40184464 40184760 -162143587 + AluSx SINE Alu 1 297 -15 756 254 125 39 chr4 40184760 40184878 -162143469 - MER46C DNA MER2_type -231 107 1 1430 107 5 0 chr4 40185181 40185377 -162142970 + AluSp SINE Alu 115 311 -2 252 0 0 0 chr4 40185377 40185405 -162142942 + (TA)n Simple_repeat Simple_repeat 2 29 0 414 269 8 8 chr4 40185730 40185849 -162142498 + MER5A DNA MER1_type 65 183 -6 438 159 9 37 chr4 40185877 40185984 -162142363 - MIR SINE MIR -112 150 47 192 235 0 0 chr4 40186628 40186679 -162141668 - L2 LINE L2 0 3313 3263 774 238 81 122 chr4 40188382 40188915 -162139432 + MLT1J LTR MaLR 1 511 0 464 243 218 5 chr4 40189279 40189485 -162138862 - MIR SINE MIR -6 256 7 806 158 8 15 chr4 40189746 40189879 -162138468 - FLAM_C SINE Alu 0 133 2 2469 73 0 7 chr4 40189886 40190188 -162138159 - AluSg SINE Alu -10 300 1 2115 110 7 0 chr4 40192193 40192475 -162135872 + AluSx SINE Alu 11 294 -18 2282 114 0 0 chr4 40194120 40194428 -162133919 - AluSx SINE Alu -4 308 1 1461 194 72 118 chr4 40194714 40195176 -162133171 + MLT1D LTR MaLR 1 439 -66 2209 109 0 0 chr4 40195176 40195487 -162132860 - AluSx SINE Alu 0 311 1 1461 194 72 118 chr4 40195487 40195550 -162132797 + MLT1D LTR MaLR 439 503 -2 314 239 0 0 chr4 40195703 40195770 -162132577 + L2 LINE L2 3204 3270 -2 260 305 38 0 chr4 40195919 40196024 -162132323 + MIR SINE MIR 111 219 -43 433 193 24 12 chr4 40196506 40196672 -162131675 + CT-rich Low_complexity Low_complexity 5 172 0 256 267 27 0 chr4 40196968 40197043 -162131304 + GA-rich Low_complexity Low_complexity 6 82 0 2152 44 0 4 chr4 40198147 40198399 -162129948 + AluY SINE Alu 60 310 -1 3105 192 112 39 chr4 40198621 40199464 -162128883 + L1MC4 LINE L1 6915 7818 -224 * 22566 146 30 16 chr4 40199461 40202750 -162125597 + L1MA3 LINE L1 10 3254 -4470 2117 105 27 10 chr4 40202750 40203045 -162125302 - AluSx SINE Alu -12 300 1 22566 146 30 16 chr4 40203045 40207362 -162120985 + L1MA3 LINE L1 3254 7724 0 23 33 0 0 chr4 40207362 40207392 -162120955 + AT_rich Low_complexity Low_complexity 1 30 0 421 276 129 43 chr4 40207537 40207619 -162120728 + L1ME LINE L1 5382 5456 -665 2333 108 0 0 chr4 40207619 40207916 -162120431 - AluSg SINE Alu -11 299 3 421 276 129 43 chr4 40207916 40208112 -162120235 + L1ME LINE L1 5456 5684 -437 301 299 186 5 chr4 40208367 40208561 -162119786 + MIR SINE MIR 2 230 -32 265 239 91 0 chr4 40208749 40208837 -162119510 + L1MC4 LINE L1 7933 8028 -14 1065 185 12 33 chr4 40208867 40208908 -162119439 + L1MC4 LINE L1 7804 7844 -198 1687 164 74 3 chr4 40208908 40209244 -162119103 + MER46B DNA MER2_type 2 236 0 1065 185 12 33 chr4 40209244 40209445 -162118902 + L1MC4 LINE L1 7844 8041 -1 2848 13 0 13 chr4 40209461 40209776 -162118571 + AluYa5 SINE Alu 1 311 0 2248 108 3 25 chr4 40209895 40210027 -162118320 + AluSx SINE Alu 1 134 -178 2256 65 0 0 chr4 40210027 40210289 -162118058 + AluY SINE Alu 38 299 -12 2248 108 3 25 chr4 40210289 40210471 -162117876 + AluSx SINE Alu 134 308 -4 2441 44 0 60 chr4 40211529 40211847 -162116500 + AluY SINE Alu 1 299 -12 2521 84 0 3 chr4 40212328 40212637 -162115710 + AluSq SINE Alu 1 308 -5 546 246 91 82 chr4 40213143 40213375 -162114972 - MER106B DNA MER1_type -2 1057 1 1456 209 75 3 chr4 40213733 40214054 -162114293 + MER2 DNA MER2_type 1 344 -1 264 271 0 0 chr4 40214459 40214518 -162113829 + (CA)n Simple_repeat Simple_repeat 2 60 0 549 311 38 4 chr4 40215042 40215277 -162113070 - MIR SINE MIR -4 258 16 1453 192 177 85 chr4 40215768 40216485 -162111862 + MER21B LTR ERV1 21 871 -60 326 236 36 64 chr4 40217547 40217655 -162110692 + MIR SINE MIR 64 170 -92 2175 92 18 11 chr4 40217655 40217988 -162110359 - AluSx SINE Alu 0 335 1 326 236 36 64 chr4 40217988 40218018 -162110329 + MIR SINE MIR 170 199 -63 400 275 17 0 chr4 40218113 40218233 -162110114 + MIR SINE MIR 5 126 -136 390 258 177 29 chr4 40218832 40219041 -162109306 + MIR SINE MIR 1 240 -22 918 203 84 4 chr4 40219616 40219843 -162108504 + L1MB3 LINE L1 5932 6176 -7 1903 158 17 0 chr4 40219955 40220253 -162108094 - AluJo SINE Alu -9 303 1 327 244 42 50 chr4 40220253 40220372 -162107975 - MIR SINE MIR -97 165 48 205 188 0 47 chr4 40222179 40222243 -162106104 + (TTAAA)n Simple_repeat Simple_repeat 3 63 0 642 229 63 58 chr4 40223125 40223330 -162105017 + MIR SINE MIR 1 206 -56 378 211 90 75 chr4 40223344 40223477 -162104870 - L2 LINE L2 -12 3301 3167 313 278 26 43 chr4 40223574 40223689 -162104658 - L2 LINE L2 -1 3271 3159 1620 137 7 50 chr4 40224027 40224305 -162104042 + AluSx SINE Alu 36 301 -11 555 157 0 0 chr4 40224403 40224486 -162103861 + AluS SINE Alu 2 84 -228 1043 137 43 0 chr4 40224783 40224944 -162103403 + LTR28 LTR ERV1 1 168 -852 1042 188 80 80 chr4 40224941 40225302 -162103045 + LTR27 LTR ERV1 276 636 0 * 257 219 49 12 chr4 40226145 40226227 -162102120 + MIR SINE MIR 69 153 -109 1771 116 51 18 chr4 40226266 40226541 -162101806 + MER4C LTR ERV1 8 291 -174 936 166 0 6 chr4 40226686 40226843 -162101504 + MER4C LTR ERV1 310 465 0 732 229 60 37 chr4 40226856 40227074 -162101273 + MLT1G1 LTR MaLR 75 297 -298 666 199 41 34 chr4 40227133 40227279 -162101068 + MLT1G1 LTR MaLR 447 593 -2 243 258 30 15 chr4 40227280 40227346 -162101001 + MIR SINE MIR 158 224 -38 1227 163 0 28 chr4 40227389 40227604 -162100743 - MER3 DNA MER1_type 0 209 1 296 225 188 59 chr4 40227878 40228234 -162100113 + L1ME4a LINE L1 5707 6108 -13 25 0 0 0 chr4 40228469 40228494 -162099853 + AT_rich Low_complexity Low_complexity 1 25 0 1864 149 203 20 chr4 40228508 40228903 -162099444 + MLT1C LTR MaLR 1 467 0 3249 157 48 21 chr4 40229130 40229735 -162098612 + L1MB1 LINE L1 5543 6163 -5 1514 205 16 93 chr4 40229771 40230200 -162098147 + MSTD LTR MaLR 1 396 0 203 161 48 32 chr4 40230395 40230457 -162097890 + A-rich Low_complexity Low_complexity 1 63 0 7409 87 51 2 chr4 40231009 40232168 -162096179 - L1P2 LINE L1 -722 5432 4233 244 304 0 22 chr4 40236043 40236135 -162092212 + L2 LINE L2 3183 3272 0 292 330 65 10 chr4 40236366 40236596 -162091751 - MIR3 SINE MIR -14 248 5 883 89 0 0 chr4 40239882 40239994 -162088353 + LTR8 LTR ERV1 580 691 0 1382 143 44 177 chr4 40239994 40240400 -162087947 + MSTB LTR MaLR 75 426 0 796 192 5 96 chr4 40240572 40240703 -162087644 - MER5A DNA MER1_type 0 189 82 1786 169 36 0 chr4 40240703 40241004 -162087343 - AluSx SINE Alu 0 312 1 796 192 5 96 chr4 40241004 40241080 -162087267 - MER5A DNA MER1_type -107 82 1 371 204 56 19 chr4 40241156 40241264 -162087083 - MER34 LTR ERV1 -3 539 428 2052 116 0 27 chr4 40241788 40242081 -162086266 - AluSg1 SINE Alu -20 289 5 4015 80 25 4 chr4 40242192 40242717 -162085630 + LTR17 LTR ERV1 1 536 -244 1327 148 17 25 chr4 40242819 40243055 -162085292 + L1PA16 LINE L1 5933 6166 0 1761 152 0 62 chr4 40243082 40243404 -162084943 - AluJo SINE Alu -10 302 1 299 311 25 19 chr4 40243407 40243568 -162084779 + LTR23 LTR ERV1 276 437 0 338 289 67 0 chr4 40243595 40243699 -162084648 - MER34B LTR ERV1 -3 562 452 1856 134 10 3 chr4 40243700 40243990 -162084357 + MER50 LTR ERV1 2 293 -441 2162 101 0 17 chr4 40244382 40244678 -162083669 + AluSx SINE Alu 14 304 -8 184 250 0 36 chr4 40245154 40245210 -162083137 - MIR SINE MIR -97 165 112 2442 101 0 0 chr4 40245243 40245551 -162082796 - AluSg SINE Alu -2 308 1 253 348 32 37 chr4 40245689 40245876 -162082471 + MIR SINE MIR 6 191 -71 254 116 93 0 chr4 40247047 40247090 -162081257 + MLT2F LTR ERVL 617 663 0 252 231 104 127 chr4 40247091 40247199 -162081148 + MIR SINE MIR 78 187 -75 2130 128 0 3 chr4 40247199 40247511 -162080836 + AluSx SINE Alu 1 311 -1 252 231 104 127 chr4 40247511 40247524 -162080823 + MIR SINE MIR 187 199 -63 2634 39 16 0 chr4 40247524 40247829 -162080518 + AluY SINE Alu 1 310 -1 252 231 104 127 chr4 40247829 40247879 -162080468 + MIR SINE MIR 199 246 -16 2181 134 0 0 chr4 40248395 40248701 -162079646 + AluSx SINE Alu 1 306 -6 302 227 92 135 chr4 40250002 40250130 -162078217 + L1M2a LINE L1 1073 1205 -5963 255 181 14 42 chr4 40250130 40250202 -162078145 + (CCCCG)n Simple_repeat Simple_repeat 1 70 0 302 227 92 135 chr4 40250202 40250284 -162078063 + L1M2a LINE L1 1205 1342 -5826 198 200 42 116 chr4 40251141 40251236 -162077111 + L2 LINE L2 3222 3309 -4 885 238 60 0 chr4 40251814 40251982 -162076365 - MER45A DNA AcHobo 0 178 1 2540 61 0 3 chr4 40252119 40252430 -162075917 + AluY SINE Alu 1 310 -1 211 248 277 10 chr4 40252507 40252608 -162075739 - MIR3 SINE MIR -37 171 44 193 244 12 12 chr4 40252711 40252793 -162075554 + GA-rich Low_complexity Low_complexity 3 84 0 206 341 123 35 chr4 40253122 40253292 -162075055 - MIR SINE MIR -62 200 16 2604 50 0 0 chr4 40254017 40254318 -162074029 + AluY SINE Alu 1 301 -10 261 294 178 27 chr4 40254324 40254470 -162073877 + MIR3 SINE MIR 28 195 -13 1175 168 57 10 chr4 40254518 40254727 -162073620 - MER20 DNA MER1_type 0 219 1 206 347 11 32 chr4 40254729 40254824 -162073523 - L2 LINE L2 -177 3095 3003 830 148 23 0 chr4 40255130 40255258 -162073089 + FLAM_C SINE Alu 2 132 -1 1941 124 0 4 chr4 40256046 40256319 -162072028 + AluJb SINE Alu 40 311 -1 1996 203 20 18 chr4 40256677 40257072 -162071275 + MSTD LTR MaLR 1 396 0 234 191 21 0 chr4 40257128 40257175 -162071172 + MER91A DNA MER1_type 2 49 -147 922 134 45 40 chr4 40258538 40258673 -162069674 - Charlie5 DNA MER1_type -11 2574 2436 2537 127 3 25 chr4 40258673 40259036 -162069311 - THE1A LTR MaLR 0 355 1 922 134 45 40 chr4 40259036 40259101 -162069246 - Charlie5 DNA MER1_type -149 2436 2373 416 67 17 0 chr4 40259638 40259698 -162068649 + (TC)n Simple_repeat Simple_repeat 2 62 0 799 200 13 7 chr4 40259849 40259999 -162068348 + Charlie4 DNA MER1_type 17 167 -1794 970 172 0 70 chr4 40260015 40260201 -162068146 - AluJo SINE Alu -139 173 1 625 144 9 9 chr4 40260206 40260317 -162068030 + Charlie4 DNA MER1_type 1823 1933 -28 387 60 0 0 chr4 40260321 40260371 -162067976 + (CA)n Simple_repeat Simple_repeat 1 50 0 207 0 0 0 chr4 40260690 40260713 -162067634 + (TC)n Simple_repeat Simple_repeat 1 23 0 897 285 62 27 chr4 40260739 40261160 -162067187 + LTR16A LTR ERVL 1 444 -6 1807 153 31 11 chr4 40261351 40261638 -162066709 - AluSx SINE Alu -19 293 1 2130 94 7 7 chr4 40261882 40262170 -162066177 + AluSg SINE Alu 1 288 -22 1130 202 158 97 chr4 40262396 40262673 -162065674 + MLT1D LTR MaLR 2 321 -184 2478 67 0 6 chr4 40262673 40262986 -162065361 + AluY SINE Alu 1 311 0 1130 202 158 97 chr4 40262986 40263183 -162065164 + MLT1D LTR MaLR 321 505 0 215 360 0 13 chr4 40263614 40263689 -162064658 + L2 LINE L2 3185 3258 -14 222 118 0 0 chr4 40263692 40263726 -162064621 + (T)n Simple_repeat Simple_repeat 1 34 0 696 132 47 0 chr4 40263728 40263834 -162064513 - HY1 scRNA scRNA -1 111 1 2302 97 3 7 chr4 40265419 40265728 -162062619 - AluSq SINE Alu -5 308 1 401 218 11 0 chr4 40265992 40266079 -162062268 - L1ME4a LINE L1 -235 5886 5799 1074 178 29 29 chr4 40266307 40266515 -162061832 + MER3 DNA MER1_type 1 208 -1 1815 148 11 4 chr4 40266540 40266818 -162061529 + AluJb SINE Alu 1 280 -32 30 0 0 0 chr4 40266943 40266973 -162061374 + AT_rich Low_complexity Low_complexity 1 30 0 270 277 128 11 chr4 40267721 40267815 -162060532 + L2 LINE L2 3168 3272 0 245 282 56 61 chr4 40267879 40267991 -162060356 - MIR SINE MIR -62 146 56 2196 131 0 13 chr4 40267991 40268304 -162060043 - AluSx SINE Alu -3 309 1 245 282 56 61 chr4 40268304 40268342 -162060005 - MIR SINE MIR -152 56 19 1070 190 24 6 chr4 40268421 40268739 -162059608 - MLT1C-int LTR MaLR -924 447 2 2148 127 10 3 chr4 40268742 40269050 -162059297 - AluSq SINE Alu -3 310 1 2080 204 76 7 chr4 40269058 40269494 -162058853 - MLT1C LTR MaLR -1 466 1 465 269 19 19 chr4 40269537 40269693 -162058654 - L1ME3A LINE L1 -78 6092 5937 * 3011 136 54 17 chr4 40269672 40270194 -162058153 - L1MB7 LINE L1 -5 6179 5639 821 144 0 0 chr4 40270857 40270975 -162057372 - FLAM_C SINE Alu -25 118 1 611 246 79 12 chr4 40271090 40271330 -162057017 - L1ME3A LINE L1 -219 5951 5696 841 131 86 157 chr4 40271332 40271696 -162056651 + LTR32 LTR ERVL 15 466 -5 354 183 0 0 chr4 40271707 40271778 -162056569 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 301 266 0 43 chr4 40271781 40271875 -162056472 - L1MC4 LINE L1 -1339 6703 6614 500 211 11 38 chr4 40271880 40272065 -162056282 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 230 262 95 24 chr4 40272070 40272154 -162056193 - L1MC4 LINE L1 -1339 6703 6614 236 198 0 116 chr4 40272174 40272260 -162056087 + L1MC3 LINE L1 6571 6646 -1139 240 233 0 0 chr4 40272260 40272333 -162056014 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 400 244 23 0 chr4 40272345 40272517 -162055830 + (CATATA)n Simple_repeat Simple_repeat 5 180 0 2059 96 4 4 chr4 40272531 40272822 -162055525 - AluY SINE Alu 0 302 12 591 258 74 26 chr4 40272867 40273057 -162055290 - L1ME3A LINE L1 -523 5639 5441 703 266 140 29 chr4 40273057 40273365 -162054982 - MLT1H LTR MaLR 0 549 208 1460 241 87 66 chr4 40273511 40273621 -162054726 - L1ME3A LINE L1 -735 5435 5329 2057 120 3 7 chr4 40273621 40273955 -162054392 - AluSx SINE Alu 0 333 1 1460 241 87 66 chr4 40273955 40274943 -162053404 - L1ME3A LINE L1 -841 5329 4299 2102 119 0 33 chr4 40274943 40275246 -162053101 + AluSx SINE Alu 3 295 -17 1460 241 87 66 chr4 40275246 40275506 -162052841 - L1ME3A LINE L1 -1871 4299 4046 523 274 15 50 chr4 40275937 40276010 -162052337 - MIR SINE MIR -46 216 142 595 197 32 75 chr4 40276010 40276198 -162052149 + MER104 DNA MER2_type 1 180 0 523 274 15 50 chr4 40276198 40276325 -162052022 - MIR SINE MIR -120 142 23 4372 136 69 80 chr4 40276407 40276941 -162051406 - MER4D LTR ERV1 0 903 382 2496 60 0 3 chr4 40276941 40277243 -162051104 + AluY SINE Alu 1 301 -10 4372 136 69 80 chr4 40277243 40277617 -162050730 - MER4D LTR ERV1 -521 382 5 181 306 81 36 chr4 40277782 40277893 -162050454 - L2 LINE L2 -4 3268 3153 786 259 82 0 chr4 40278220 40278440 -162049907 - LTR16C LTR ERVL -66 425 188 539 246 35 14 chr4 40279369 40279511 -162048836 + MIR SINE MIR 107 251 -11 218 184 0 0 chr4 40280107 40280145 -162048202 - MIR SINE MIR -65 197 160 189 107 0 0 chr4 40280302 40280330 -162048017 + (CAA)n Simple_repeat Simple_repeat 2 29 0 377 200 35 70 chr4 40280649 40280764 -162047583 + MIR SINE MIR 87 197 -65 373 270 0 0 chr4 40280764 40280864 -162047483 + L1ME3 LINE L1 5066 5165 -981 1424 245 107 88 chr4 40280905 40281003 -162047344 + MLT1G1 LTR MaLR 3 98 -497 2512 68 0 0 chr4 40281003 40281312 -162047035 + AluY SINE Alu 1 309 -2 1424 245 107 88 chr4 40281312 40281793 -162046554 + MLT1G1 LTR MaLR 98 593 -2 311 246 63 28 chr4 40281794 40281936 -162046411 + MLT1G1-int LTR MaLR 4 150 -1221 588 295 25 73 chr4 40281944 40282259 -162046088 + MLT1G1-int LTR MaLR 307 606 -765 189 0 0 0 chr4 40282592 40282613 -162045734 + (T)n Simple_repeat Simple_repeat 1 21 0 372 306 111 64 chr4 40282823 40283212 -162045135 + MLT1G1-int LTR MaLR 961 1367 -4 1059 245 97 92 chr4 40283216 40283635 -162044712 + MLT1G1 LTR MaLR 1 425 -170 2288 73 0 61 chr4 40283635 40283963 -162044384 + AluY SINE Alu 1 308 -3 1059 245 97 92 chr4 40283963 40284131 -162044216 + MLT1G1 LTR MaLR 425 591 -4 1020 244 67 42 chr4 40284147 40284188 -162044159 + L1ME3 LINE L1 5280 5318 -844 3709 122 61 0 chr4 40284188 40284729 -162043618 + L1PA15 LINE L1 5592 6165 0 1020 244 67 42 chr4 40284729 40285044 -162043303 + L1ME3 LINE L1 5318 5645 -517 1169 152 0 0 chr4 40285075 40285246 -162043101 + AluJb SINE Alu 128 298 -14 593 191 27 66 chr4 40285253 40285436 -162042911 + L1ME3 LINE L1 5984 6159 -3 2340 99 0 0 chr4 40285443 40285735 -162042612 + AluSg1 SINE Alu 1 292 -17 334 232 0 0 chr4 40285739 40285808 -162042539 + MIR SINE MIR 193 261 -1 670 302 133 27 chr4 40286742 40287405 -162040942 + L2 LINE L2 2531 3272 0 1160 152 0 0 chr4 40287831 40288002 -162040345 + AluJb SINE Alu 142 312 0 1216 135 0 0 chr4 40288344 40288514 -162039833 + AluSq SINE Alu 130 299 -14 2167 110 0 0 chr4 40289241 40289546 -162038801 + AluSx SINE Alu 1 305 0 234 91 0 0 chr4 40291313 40291346 -162037001 + (CA)n Simple_repeat Simple_repeat 1 33 0 419 35 0 17 chr4 40291826 40291884 -162036463 + (TG)n Simple_repeat Simple_repeat 2 58 0 3704 130 2 2 chr4 40292872 40293412 -162034935 - L1PA13 LINE L1 0 6163 5624 682 0 45 0 chr4 40293421 40293509 -162034838 + (TATAA)n Simple_repeat Simple_repeat 1 92 0 1942 74 0 8 chr4 40293586 40293830 -162034517 - AluY SINE Alu -11 300 59 250 272 40 24 chr4 40293831 40293956 -162034391 + L1MC2 LINE L1 3759 3885 -2261 2014 161 3 54 chr4 40293961 40294351 -162033996 + MLT1B LTR MaLR 2 371 -19 759 304 78 17 chr4 40294375 40294950 -162033397 + L1MC2 LINE L1 3891 4500 -1646 4793 192 20 41 chr4 40295124 40296339 -162032008 + L1MC2 LINE L1 5127 6318 -26 575 273 61 31 chr4 40296333 40296626 -162031721 + L1ME1 LINE L1 5791 6092 -74 * 339 277 28 11 chr4 40296987 40297164 -162031183 + (TA)n Simple_repeat Simple_repeat 1 180 0 458 85 0 0 chr4 40297171 40297230 -162031117 - AluSp/q SINE Alu -20 293 235 30 0 0 0 chr4 40297230 40297260 -162031087 + AT_rich Low_complexity Low_complexity 1 30 0 195 170 0 0 chr4 40297271 40297318 -162031029 + (TA)n Simple_repeat Simple_repeat 1 47 0 270 232 28 39 chr4 40297412 40297593 -162030754 + (TA)n Simple_repeat Simple_repeat 2 180 0 26 74 0 0 chr4 40298483 40298537 -162029810 + AT_rich Low_complexity Low_complexity 1 54 0 726 272 54 14 chr4 40298557 40298833 -162029514 + L1M4 LINE L1 4068 4354 -1792 5991 60 11 4 chr4 40298928 40299679 -162028668 + MER4E LTR ERV1 1 756 -10 243 0 0 0 chr4 40299684 40299711 -162028636 + (CA)n Simple_repeat Simple_repeat 2 28 0 575 307 75 16 chr4 40299724 40300112 -162028235 + L1M4 LINE L1 4473 4883 -1263 424 215 264 0 chr4 40300340 40300484 -162027863 + Charlie4 DNA MER1_type 14 195 -1766 2322 99 0 16 chr4 40300839 40301152 -162027195 - AluSg SINE Alu -2 308 1 2520 58 3 6 chr4 40301520 40301832 -162026515 - AluY SINE Alu 0 311 1 1043 184 0 0 chr4 40302389 40302563 -162025784 + AluJb SINE Alu 137 310 -2 192 257 69 20 chr4 40303074 40303175 -162025172 + L2 LINE L2 2231 2336 -978 691 298 89 17 chr4 40304277 40304740 -162023607 + MLT1D LTR MaLR 3 498 -7 1402 183 27 40 chr4 40307225 40307395 -162020952 - AluJo SINE Alu -16 296 130 1994 110 28 3 chr4 40307395 40307686 -162020661 - AluSx SINE Alu -14 298 1 1402 183 27 40 chr4 40307686 40307815 -162020532 - AluJo SINE Alu -182 130 1 1992 144 0 13 chr4 40308093 40308391 -162019956 + AluSx SINE Alu 1 294 -18 2529 67 0 3 chr4 40309807 40310107 -162018240 + AluY SINE Alu 1 299 -12 554 203 133 22 chr4 40310516 40310752 -162017595 - L1MCa LINE L1 -3951 2475 2270 1107 213 49 0 chr4 40310753 40310997 -162017350 - L1MCa LINE L1 -5693 733 478 1283 84 0 0 chr4 40310997 40311152 -162017195 + AluSg/x SINE Alu 137 291 -21 1268 263 7 0 chr4 40311153 40311423 -162016924 - L1MCa LINE L1 -5942 484 213 2548 99 31 6 chr4 40312044 40312399 -162015948 + THE1B LTR MaLR 1 364 0 357 237 21 10 chr4 40312750 40312847 -162015500 - MER5A DNA MER1_type -1 188 91 182 234 65 39 chr4 40313092 40313169 -162015178 - MIR SINE MIR -116 146 68 23 0 0 0 chr4 40313311 40313334 -162015013 + AT_rich Low_complexity Low_complexity 1 23 0 2165 118 0 3 chr4 40313382 40313679 -162014668 - AluSx SINE Alu -16 296 1 2108 144 0 0 chr4 40313741 40314053 -162014294 - AluSx SINE Alu 0 312 1 2193 121 18 49 chr4 40316518 40316905 -162011442 + THE1C LTR MaLR 1 375 0 10847 106 9 33 chr4 40316906 40318525 -162009822 + THE1C-int LTR MaLR 2 1580 0 2221 122 24 27 chr4 40318525 40318901 -162009446 + THE1C LTR MaLR 1 375 0 188 163 23 0 chr4 40319560 40319603 -162008744 + (CA)n Simple_repeat Simple_repeat 1 44 0 1919 128 14 10 chr4 40319845 40320134 -162008213 - AluSx SINE Alu -22 290 1 231 36 0 0 chr4 40320268 40320296 -162008051 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 322 26 0 0 chr4 40321070 40321109 -162007238 + L1PA8 LINE L1 6127 6165 -7 1352 192 0 33 chr4 40321990 40322266 -162006081 + AluJo SINE Alu 1 267 -45 324 336 79 0 chr4 40322894 40323034 -162005313 + MIR SINE MIR 12 162 -100 224 170 19 0 chr4 40324710 40324763 -162003584 + (CAGAA)n Simple_repeat Simple_repeat 2 55 0 252 289 13 0 chr4 40325645 40325721 -162002626 + MER103 DNA DNA 13 89 -77 559 294 20 15 chr4 40327331 40327535 -162000812 + MIR SINE MIR 12 216 -46 13336 115 42 11 chr4 40329014 40331097 -161997250 - Tigger1 DNA MER2_type 0 2418 272 1648 162 0 82 chr4 40331282 40331597 -161996750 + AluJb SINE Alu 1 289 -23 288 0 0 0 chr4 40332285 40332317 -161996030 + (CA)n Simple_repeat Simple_repeat 1 32 0 376 308 140 14 chr4 40333051 40333265 -161995082 - MER112 DNA MER1_type -17 243 3 2040 142 0 3 chr4 40335766 40336061 -161992286 + AluSx SINE Alu 1 294 -18 1998 140 0 17 chr4 40338657 40338950 -161989397 - AluSx SINE Alu -24 288 1 1959 156 0 13 chr4 40339963 40340271 -161988076 - AluJo SINE Alu -8 304 1 375 259 71 0 chr4 40341320 40341432 -161986915 - MIR3 SINE MIR -52 156 37 1900 145 3 7 chr4 40341642 40341925 -161986422 - AluJo SINE Alu -25 287 6 494 174 10 0 chr4 40342413 40342511 -161985836 - L1MA5 LINE L1 0 6300 6202 249 56 111 0 chr4 40342708 40342744 -161985603 - L1MA6 LINE L1 -101 6199 6160 180 0 0 0 chr4 40342882 40342902 -161985445 + (T)n Simple_repeat Simple_repeat 1 20 0 347 232 168 0 chr4 40343432 40343527 -161984820 + MIR SINE MIR 51 161 -101 460 224 239 0 chr4 40345655 40345789 -161982558 + MER5A DNA MER1_type 14 179 -10 186 325 0 36 chr4 40346280 40346363 -161981984 - MIR SINE MIR -29 233 154 315 216 62 31 chr4 40346364 40346461 -161981886 - L1ME3 LINE L1 -3 6159 6060 251 264 17 0 chr4 40346474 40346566 -161981781 - L1MB1 LINE L1 -197 5967 5872 189 0 0 0 chr4 40350297 40350318 -161978029 + (A)n Simple_repeat Simple_repeat 1 21 0 274 256 22 11 chr4 40350341 40350431 -161977916 + (TA)n Simple_repeat Simple_repeat 2 92 0 202 130 19 19 chr4 40352019 40352073 -161976274 + (TA)n Simple_repeat Simple_repeat 2 55 0 2357 108 0 9 chr4 40353241 40353556 -161974791 - AluSx SINE Alu 0 312 1 220 316 118 15 chr4 40353799 40353935 -161974412 + L2 LINE L2 2716 2865 -449 204 313 112 45 chr4 40354142 40354276 -161974071 + L2 LINE L2 3125 3267 -5 197 286 143 42 chr4 40354405 40354524 -161973823 - L2 LINE L2 -1 3271 3141 265 341 22 71 chr4 40354738 40354920 -161973427 - MIR3 SINE MIR -17 191 19 338 204 64 30 chr4 40355338 40355479 -161972868 + MLT1H LTR MaLR 250 549 0 1606 190 133 3 chr4 40356680 40357049 -161971298 + Charlie4a DNA MER1_type 5 421 -87 26 0 0 0 chr4 40357604 40357630 -161970717 + AT_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr4 40358263 40358287 -161970060 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1690 166 16 7 chr4 40358733 40359040 -161969307 + AluJb SINE Alu 1 310 -2 1623 143 136 10 chr4 40359571 40359872 -161968475 + MER44D DNA MER2_type 1 609 0 840 282 145 28 chr4 40362027 40362198 -161966149 - L2 LINE L2 -3 3310 3161 2009 98 36 0 chr4 40362198 40362472 -161965875 + AluSx SINE Alu 1 284 -28 441 0 0 0 chr4 40362472 40362521 -161965826 + (CATA)n Simple_repeat Simple_repeat 2 50 0 840 282 145 28 chr4 40362521 40363098 -161965249 - L2 LINE L2 -151 3162 2469 2241 83 38 0 chr4 40364107 40364397 -161963950 + AluSp SINE Alu 1 301 -12 1627 148 37 30 chr4 40365021 40365319 -161963028 - AluJb SINE Alu -12 300 1 2097 108 9 32 chr4 40365948 40366263 -161962084 + AluSq SINE Alu 1 308 -5 2233 102 3 0 chr4 40367743 40368038 -161960309 - AluSx SINE Alu -13 299 4 232 298 99 33 chr4 40369595 40369716 -161958631 + MIR SINE MIR 134 262 0 631 266 48 29 chr4 40370526 40370733 -161957614 + L3 LINE CR1 937 1147 -430 1604 141 59 59 chr4 40370763 40371069 -161957278 + AluJo SINE Alu 1 306 -6 198 0 0 0 chr4 40371261 40371283 -161957064 + (A)n Simple_repeat Simple_repeat 1 22 0 423 62 62 0 chr4 40372538 40372603 -161955744 + MER41B LTR ERV1 481 549 -86 200 35 35 0 chr4 40372914 40372943 -161955404 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 805 139 9 0 chr4 40372945 40373060 -161955287 - FLAM_C SINE Alu -17 116 1 795 250 46 124 chr4 40374236 40374494 -161953853 + L1MC4 LINE L1 7501 7689 -353 2318 99 3 0 chr4 40374494 40374798 -161953549 + AluSq SINE Alu 1 305 -8 795 250 46 124 chr4 40374798 40375127 -161953220 + L1MC4 LINE L1 7689 8042 0 536 240 55 7 chr4 40375154 40375300 -161953047 + L1MA10 LINE L1 6175 6327 -7 306 0 0 0 chr4 40375300 40375334 -161953013 + (CA)n Simple_repeat Simple_repeat 2 35 0 210 158 42 0 chr4 40375570 40375618 -161952729 + MIR SINE MIR 97 148 -62 22 0 0 0 chr4 40376135 40376157 -161952190 + AT_rich Low_complexity Low_complexity 1 22 0 202 348 27 36 chr4 40377306 40377418 -161950929 + L2 LINE L2 2214 2324 -990 203 100 0 50 chr4 40377846 40377886 -161950461 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 216 143 44 22 chr4 40377968 40378059 -161950288 + (TA)n Simple_repeat Simple_repeat 1 93 0 2291 112 3 0 chr4 40378143 40378448 -161949899 + AluSx SINE Alu 1 306 -6 260 236 0 36 chr4 40378473 40378613 -161949734 + (TA)n Simple_repeat Simple_repeat 1 135 0 210 269 65 0 chr4 40379349 40379442 -161948905 - MIR3 SINE MIR -14 194 96 718 151 8 8 chr4 40379640 40379766 -161948581 - L1MA4A LINE L1 -11 6292 6167 241 296 37 0 chr4 40381078 40381159 -161947188 + L2 LINE L2 2242 2325 -989 1851 188 9 15 chr4 40381171 40381512 -161946835 - MER34B LTR ERV1 -176 389 51 1838 174 91 43 chr4 40381512 40381950 -161946397 - LTR2B LTR ERV1 0 490 32 470 119 0 0 chr4 40381967 40382040 -161946307 - MER34C LTR ERV1 -472 93 1 263 261 26 124 chr4 40382606 40382759 -161945588 - L2 LINE L2 -3 3310 3173 21 0 0 0 chr4 40383866 40383887 -161944460 + AT_rich Low_complexity Low_complexity 1 21 0 3043 147 39 13 chr4 40383911 40384505 -161943842 + MER39 LTR ERV1 19 707 0 1091 216 35 94 chr4 40384543 40384946 -161943401 + LTR37B LTR ERV1 90 468 0 225 205 13 39 chr4 40385233 40385311 -161943036 + (TA)n Simple_repeat Simple_repeat 2 77 0 2117 180 115 22 chr4 40385579 40385664 -161942683 - MLT1D LTR MaLR 0 505 429 1037 64 41 177 chr4 40385664 40385884 -161942463 - MER30B DNA MER1_type 0 190 1 2117 180 115 22 chr4 40385884 40386260 -161942087 - MLT1D LTR MaLR -76 429 1 496 275 126 0 chr4 40386322 40386489 -161941858 - MER5A DNA MER1_type -1 188 1 24 32 0 0 chr4 40386582 40386613 -161941734 + AT_rich Low_complexity Low_complexity 1 31 0 439 270 38 87 chr4 40386731 40386852 -161941495 + MIR SINE MIR 87 197 -65 2328 97 0 0 chr4 40386852 40387152 -161941195 + AluY SINE Alu 2 301 -10 439 270 38 87 chr4 40387152 40387215 -161941132 + MIR SINE MIR 197 262 0 2969 82 3 6 chr4 40388503 40388868 -161939479 - THE1B LTR MaLR 0 364 1 244 225 69 4 chr4 40388884 40388958 -161939389 - MIR SINE MIR -66 142 69 566 175 0 0 chr4 40388978 40389058 -161939289 + AluS SINE Alu 1 80 -233 566 217 123 91 chr4 40389105 40389358 -161938989 - MIR SINE MIR 0 262 2 2248 104 0 0 chr4 40389421 40389710 -161938637 - AluSq SINE Alu -24 289 1 186 343 130 0 chr4 40390777 40390885 -161937462 + L2 LINE L2 3190 3311 -2 8387 166 67 38 chr4 40391077 40391704 -161936643 + L1MC3 LINE L1 5938 6545 -1240 1313 212 89 43 chr4 40391704 40392053 -161936294 - MLT1A1 LTR MaLR 0 365 1 8387 166 67 38 chr4 40392053 40392985 -161935362 + L1MC3 LINE L1 6545 7448 -337 2072 126 3 3 chr4 40392985 40393279 -161935068 + AluSx SINE Alu 1 294 -18 8387 166 67 38 chr4 40393279 40393321 -161935026 + L1MC3 LINE L1 7448 7487 -298 258 32 0 0 chr4 40393321 40393352 -161934995 + (CA)n Simple_repeat Simple_repeat 2 32 0 8387 166 67 38 chr4 40393352 40393537 -161934810 + L1MC3 LINE L1 7487 7779 -6 886 128 0 40 chr4 40394594 40394743 -161933604 - FLAM_C SINE Alu 0 143 1 600 14 0 0 chr4 40394868 40394937 -161933410 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 2068 108 0 0 chr4 40394937 40395216 -161933131 - AluY SINE Alu -32 279 1 1768 194 22 22 chr4 40395542 40395907 -161932440 + MLT1A1 LTR MaLR 1 365 0 253 205 0 0 chr4 40395944 40395983 -161932364 + AluJ/monomer SINE Alu 1 39 -263 1847 175 23 34 chr4 40396667 40397016 -161931331 + MLT1A1 LTR MaLR 1 345 -20 574 226 16 130 chr4 40397381 40397704 -161930643 - MER5C DNA MER1_type 0 324 39 2078 244 21 28 chr4 40397719 40398288 -161930059 + L1ME3A LINE L1 5403 5967 -203 1694 183 0 4 chr4 40398371 40398650 -161929697 + AluJb SINE Alu 1 278 -34 285 146 0 0 chr4 40398656 40398704 -161929643 + (TA)n Simple_repeat Simple_repeat 2 49 0 368 197 152 45 chr4 40398860 40399038 -161929309 - MER5C DNA MER1_type 0 324 128 396 0 0 0 chr4 40399284 40399328 -161929019 + (TG)n Simple_repeat Simple_repeat 2 45 0 2159 115 0 0 chr4 40399330 40399608 -161928739 - AluSc SINE Alu -31 278 1 2047 113 28 3 chr4 40399613 40399896 -161928451 - AluSx SINE Alu -22 290 1 1693 181 0 10 chr4 40400258 40400556 -161927791 + AluJo SINE Alu 11 305 -7 312 240 115 0 chr4 40401302 40401398 -161926949 - MER5C DNA MER1_type -213 111 5 790 169 0 16 chr4 40401880 40402004 -161926343 - FLAM_A SINE Alu -7 126 5 595 309 136 18 chr4 40402004 40402386 -161925961 + L2 LINE L2 2886 3312 -1 416 254 109 70 chr4 40402991 40403192 -161925155 + MIR SINE MIR 40 248 -14 1903 161 16 10 chr4 40403247 40403557 -161924790 - AluJb SINE Alu 0 312 1 1563 259 178 29 chr4 40403669 40404315 -161924032 - L2 LINE L2 -5 3308 2760 1430 208 16 22 chr4 40404315 40404602 -161923745 + AluJo SINE Alu 2 288 -24 243 0 0 0 chr4 40404602 40404629 -161923718 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 1430 208 16 22 chr4 40404629 40404654 -161923693 + AluJo SINE Alu 288 312 0 1563 259 178 29 chr4 40404654 40405174 -161923173 - L2 LINE L2 -553 2760 1156 1693 137 0 8 chr4 40405193 40405441 -161922906 + AluSq SINE Alu 1 246 -67 2533 134 74 12 chr4 40406144 40406547 -161921800 - MSTA LTR MaLR 0 428 1 1203 285 39 30 chr4 40406666 40407126 -161921221 + MLT1J LTR MaLR 13 476 -35 225 0 0 0 chr4 40407353 40407378 -161920969 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 462 275 39 39 chr4 40407410 40407592 -161920755 + MER5A DNA MER1_type 7 188 -1 2156 127 3 0 chr4 40407649 40407948 -161920399 + AluSq SINE Alu 1 300 -13 2434 116 124 18 chr4 40408387 40408774 -161919573 - MSTA LTR MaLR 0 428 1 183 318 59 12 chr4 40408900 40408985 -161919362 - L2 LINE L2 -4 3309 3221 1520 177 19 105 chr4 40409755 40409904 -161918443 + MER58B DNA MER1_type 2 162 -2258 1568 213 0 10 chr4 40409904 40410195 -161918152 + AluJb SINE Alu 1 288 -24 1520 177 19 105 chr4 40410195 40410417 -161917930 + MER58B DNA MER1_type 162 341 0 241 347 0 0 chr4 40410585 40410657 -161917690 + L2 LINE L2 3136 3207 -65 228 189 0 38 chr4 40410678 40410731 -161917616 + L1MC4 LINE L1 6653 6703 -1339 * 255 175 5 26 chr4 40410700 40410777 -161917570 - L1MCa LINE L1 -1339 6983 1995 203 271 0 0 chr4 40410782 40410830 -161917517 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 225 178 0 0 chr4 40410832 40410877 -161917470 + LTR66 LTR ERVL 395 439 -171 401 254 0 8 chr4 40410877 40411003 -161917344 + (CA)n Simple_repeat Simple_repeat 2 126 0 1820 165 23 96 chr4 40411086 40411480 -161916867 + MLT1A1 LTR MaLR 1 365 0 249 257 57 0 chr4 40411703 40411773 -161916574 - L1MC/D LINE L1 -1894 5914 5841 335 241 17 35 chr4 40412345 40412461 -161915886 - L1MC4a LINE L1 -1973 5835 5722 21 0 0 0 chr4 40412471 40412492 -161915855 + AT_rich Low_complexity Low_complexity 1 21 0 269 348 22 7 chr4 40412686 40412824 -161915523 + L2 LINE L2 2910 3049 -223 4091 149 5 19 chr4 40413115 40413212 -161915135 + MER41B LTR ERV1 1 98 -537 1987 142 7 0 chr4 40413212 40413508 -161914839 - AluSx SINE Alu -14 298 1 4091 149 5 19 chr4 40413508 40414054 -161914293 + MER41B LTR ERV1 98 635 0 415 286 55 39 chr4 40414105 40414287 -161914060 + MIR SINE MIR 20 204 -58 21 36 0 0 chr4 40414587 40414615 -161913732 + AT_rich Low_complexity Low_complexity 1 28 0 753 268 131 63 chr4 40415212 40415784 -161912563 + MLT1L LTR MaLR 5 615 0 2123 134 0 3 chr4 40415926 40416231 -161912116 + AluSx SINE Alu 2 305 -7 2127 133 3 3 chr4 40416549 40416857 -161911490 - AluSx SINE Alu -4 308 1 362 86 0 35 chr4 40416871 40416929 -161911418 - MADE1 DNA Mariner 0 80 25 2134 189 63 37 chr4 40417335 40417414 -161910933 + MLT1D LTR MaLR 1 76 -429 2280 159 19 11 chr4 40417414 40417786 -161910561 + THE1C LTR MaLR 1 375 0 2134 189 63 37 chr4 40417786 40418198 -161910149 + MLT1D LTR MaLR 76 505 0 249 299 216 0 chr4 40418209 40418343 -161910004 - MIR SINE MIR -38 224 62 662 254 17 6 chr4 40418404 40418577 -161909770 - MER5B DNA MER1_type 0 178 4 485 271 60 6 chr4 40418662 40418828 -161909519 - MER5B DNA MER1_type -2 176 2 309 311 60 70 chr4 40419600 40419899 -161908448 - MARNA DNA Mariner -148 438 143 1965 159 0 0 chr4 40419981 40420271 -161908076 + AluJb SINE Alu 1 290 -22 30 0 0 0 chr4 40420271 40420301 -161908046 + AT_rich Low_complexity Low_complexity 1 30 0 612 223 58 0 chr4 40420333 40420472 -161907875 + MIR SINE MIR 106 252 -10 737 298 62 48 chr4 40420532 40421029 -161907318 - MLT1K LTR MaLR -16 572 69 185 289 0 0 chr4 40421144 40421189 -161907158 - L2 LINE L2 -19 3294 3250 708 312 56 4 chr4 40421207 40421438 -161906909 - MIR SINE MIR 0 262 20 385 295 16 8 chr4 40421432 40421554 -161906793 - MIR SINE MIR -54 208 86 * 337 299 28 76 chr4 40421609 40421753 -161906594 + MER91A DNA MER1_type 1 137 -59 1950 116 49 0 chr4 40422237 40422521 -161905826 - AluSx SINE Alu -14 298 1 359 279 62 81 chr4 40422569 40422721 -161905626 + MLT1L LTR MaLR 11 159 -456 407 224 12 0 chr4 40422721 40422806 -161905541 - LTR16C LTR ERVL 0 491 406 413 185 107 24 chr4 40423389 40423503 -161904844 + MLT1J LTR MaLR 59 159 -291 2060 129 0 49 chr4 40424133 40424458 -161903889 - AluJb SINE Alu -3 309 1 249 254 87 32 chr4 40424750 40424876 -161903471 + MLT1J LTR MaLR 379 511 0 2901 19 0 0 chr4 40425300 40425618 -161902729 + AluYb8 SINE Alu 1 318 0 2154 127 0 0 chr4 40426076 40426384 -161901963 + AluSx SINE Alu 1 308 0 2064 142 3 0 chr4 40426984 40427293 -161901054 - AluSx SINE Alu -2 310 1 412 234 18 9 chr4 40427293 40427404 -161900943 - MIR SINE MIR -81 181 70 1059 194 55 5 chr4 40427404 40427605 -161900742 - MLT1D LTR MaLR -294 211 1 418 320 16 31 chr4 40427927 40428055 -161900292 + MER91A DNA MER1_type 44 169 -27 1642 194 7 10 chr4 40428546 40428850 -161899497 + AluJo SINE Alu 1 303 -9 425 337 39 10 chr4 40428991 40429196 -161899151 + MIR SINE MIR 34 244 -18 318 336 27 20 chr4 40429294 40429443 -161898904 - MIR SINE MIR -66 196 47 2145 205 51 24 chr4 40429784 40430276 -161898071 + MLT1D LTR MaLR 1 505 0 214 277 142 5 chr4 40430402 40430544 -161897803 - MIR SINE MIR -19 243 18 342 329 13 44 chr4 40430564 40430722 -161897625 - MIR SINE MIR -58 204 52 1500 158 0 60 chr4 40431444 40431729 -161896618 - AluJb SINE Alu -13 299 32 289 317 50 30 chr4 40431864 40431965 -161896382 + L2 LINE L2 3143 3245 -27 2129 97 7 3 chr4 40431986 40432274 -161896073 + AluSq SINE Alu 1 289 -24 261 267 44 0 chr4 40432429 40432519 -161895828 - MIR3 SINE MIR -23 185 92 200 213 147 80 chr4 40432809 40432884 -161895463 + MIR SINE MIR 20 99 -109 388 237 30 30 chr4 40432989 40433120 -161895227 + LTR16B LTR ERVL 332 462 -2 438 246 57 33 chr4 40433208 40433330 -161895017 - L2 LINE L2 0 3272 3148 1956 198 106 23 chr4 40433686 40434166 -161894181 + MER74A LTR ERVL 1 520 -38 2739 121 36 12 chr4 40434484 40434896 -161893451 - MSTB LTR MaLR -4 422 1 330 288 109 22 chr4 40434976 40435250 -161893097 - MLT1J2 LTR MaLR -124 322 7 305 264 27 64 chr4 40435309 40435419 -161892928 - MIR SINE MIR -110 152 47 21 0 0 0 chr4 40436168 40436189 -161892158 + AT_rich Low_complexity Low_complexity 1 21 0 558 242 160 52 chr4 40436567 40436798 -161891549 - MLT1J2 LTR MaLR -18 432 177 2335 169 93 0 chr4 40436976 40437384 -161890963 + MLT2B1 LTR ERVL 1 446 -74 688 138 83 28 chr4 40437408 40437553 -161890794 + MLT1E1 LTR MaLR 198 350 -304 1726 169 68 0 chr4 40437749 40438063 -161890284 - AluSx SINE Alu 0 337 5 272 258 155 32 chr4 40438232 40438387 -161889960 + L2 LINE L2 2684 2857 -457 21 0 0 0 chr4 40438647 40438668 -161889679 + AT_rich Low_complexity Low_complexity 1 21 0 387 0 0 0 chr4 40438744 40438787 -161889560 + (CA)n Simple_repeat Simple_repeat 2 44 0 697 273 130 9 chr4 40438879 40439110 -161889237 + MIR SINE MIR 2 260 -2 273 98 0 0 chr4 40439174 40439215 -161889132 + (TG)n Simple_repeat Simple_repeat 1 41 0 294 319 17 26 chr4 40439222 40439338 -161889009 + L2 LINE L2 3183 3297 -16 2415 157 38 26 chr4 40439631 40440052 -161888295 + MSTB LTR MaLR 1 426 0 2133 139 0 0 chr4 40440174 40440476 -161887871 + AluSx SINE Alu 5 306 -6 2889 104 3 3 chr4 40440930 40441305 -161887042 - THE1C LTR MaLR 0 375 1 2581 53 0 0 chr4 40442284 40442585 -161885762 - AluY SINE Alu -10 301 1 2248 147 30 41 chr4 40442995 40443068 -161885279 - THE1B LTR MaLR 0 364 292 2256 114 3 0 chr4 40443068 40443365 -161884982 + AluSp SINE Alu 1 298 -15 2248 147 30 41 chr4 40443365 40443659 -161884688 - THE1B LTR MaLR -72 292 1 415 271 23 16 chr4 40444151 40444280 -161884067 - LTR28 LTR ERV1 -54 966 837 508 258 112 39 chr4 40445233 40445411 -161882936 - MIR3 SINE MIR -2 206 16 346 324 49 0 chr4 40445991 40446093 -161882254 - L2 LINE L2 -6 3266 3160 428 302 126 42 chr4 40446415 40446700 -161881647 + L2 LINE L2 2999 3307 -6 860 274 101 42 chr4 40447643 40448262 -161880085 + L1ME4a LINE L1 5445 6101 -16 3386 42 0 0 chr4 40448262 40448648 -161879699 - L1PA4 LINE L1 0 6155 5770 334 78 16 16 chr4 40448672 40448736 -161879611 + (TTTTA)n Simple_repeat Simple_repeat 1 64 0 33446 38 1 0 chr4 40448736 40454644 -161873703 - L1PA3 LINE L1 -24 6131 221 1846 305 73 41 chr4 40454630 40454765 -161873582 + L1MCc LINE L1 262 391 -6032 * 1436 214 177 25 chr4 40454765 40455200 -161873147 + MLT1D LTR MaLR 1 501 -4 1846 305 73 41 chr4 40455200 40456184 -161872163 + L1MCc LINE L1 391 1417 -5006 597 149 25 8 chr4 40456188 40456309 -161872038 + L1M4 LINE L1 2801 2923 -3223 712 233 159 0 chr4 40456967 40457130 -161871217 + MER5A DNA MER1_type 1 189 0 1853 144 3 10 chr4 40457619 40457910 -161870437 - AluSx SINE Alu -15 297 9 2393 84 3 3 chr4 40459321 40459629 -161868718 + AluSp SINE Alu 1 308 -5 784 158 0 8 chr4 40459845 40459978 -161868369 - FLAM_C SINE Alu 0 133 2 369 62 0 0 chr4 40460955 40461003 -161867344 + (TG)n Simple_repeat Simple_repeat 1 48 0 1434 169 106 31 chr4 40461033 40461353 -161866994 - MER2 DNA MER2_type 0 344 1 2383 97 0 0 chr4 40461904 40462204 -161866143 + AluSg SINE Alu 1 300 -10 22 35 0 0 chr4 40462703 40462732 -161865615 + AT_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chr4 40462821 40462852 -161865495 + AT_rich Low_complexity Low_complexity 1 31 0 362 314 166 14 chr4 40463074 40463297 -161865050 - L2 LINE L2 -468 2846 2590 748 247 53 0 chr4 40463301 40463491 -161864856 - MIR SINE MIR -49 213 14 271 171 70 4 chr4 40463566 40463753 -161864594 + AluJo SINE Alu 27 302 0 361 248 60 53 chr4 40463753 40463886 -161864461 - L2 LINE L2 -1295 2019 1886 392 262 130 50 chr4 40464338 40464631 -161863716 + L1MC4a LINE L1 5152 5471 -760 341 262 105 37 chr4 40464733 40464924 -161863423 + L1MC4a LINE L1 5711 5914 -1894 30 45 0 0 chr4 40466258 40466302 -161862045 + AT_rich Low_complexity Low_complexity 1 44 0 668 354 101 51 chr4 40467418 40467908 -161860439 + L2 LINE L2 1638 2102 -1212 7518 134 31 7 chr4 40467908 40468130 -161860217 - HSMAR2 DNA Mariner -1 1301 1086 180 0 0 0 chr4 40468130 40468150 -161860197 + (TTG)n Simple_repeat Simple_repeat 3 22 0 7518 134 31 7 chr4 40468150 40469198 -161859149 - HSMAR2 DNA Mariner -216 1086 1 668 354 101 51 chr4 40469198 40469982 -161858365 + L2 LINE L2 2102 2976 -338 2292 112 0 0 chr4 40469989 40470294 -161858053 - AluSc SINE Alu -4 305 1 2120 116 14 0 chr4 40470431 40470725 -161857622 + AluSx SINE Alu 5 302 -10 290 341 40 16 chr4 40470826 40470952 -161857395 + L2 LINE L2 3144 3272 0 230 288 14 0 chr4 40470967 40471040 -161857307 - L1ME LINE L1 -456 5665 5592 3416 174 7 12 chr4 40471399 40472126 -161856221 - L1P LINE L1 -859 5287 4557 252 0 0 0 chr4 40472126 40472154 -161856193 + (TG)n Simple_repeat Simple_repeat 1 28 0 3416 174 7 12 chr4 40472154 40472786 -161855561 - L1P LINE L1 -1589 4557 3767 3025 121 4 0 chr4 40472790 40473252 -161855095 + L1PA13 LINE L1 5324 5787 -376 1740 103 117 0 chr4 40473253 40473526 -161854821 + L1PA13 LINE L1 5851 6155 -8 184 309 0 0 chr4 40474071 40474113 -161854234 + MIR SINE MIR 42 83 -125 255 350 196 7 chr4 40474211 40474354 -161853993 + MER5B DNA MER1_type 8 177 -1 291 145 13 40 chr4 40474895 40474971 -161853376 + GA-rich Low_complexity Low_complexity 3 76 0 1240 98 12 0 chr4 40475741 40475905 -161852442 - AluSp SINE Alu -11 302 137 323 102 0 0 chr4 40475905 40475954 -161852393 + MADE1 DNA Mariner 32 80 0 330 187 20 0 chr4 40475966 40476116 -161852231 + (TA)n Simple_repeat Simple_repeat 1 153 0 2291 93 0 0 chr4 40476116 40476406 -161851941 - AluSg SINE Alu -20 290 1 453 36 0 0 chr4 40476897 40476952 -161851395 + (TA)n Simple_repeat Simple_repeat 1 55 0 270 194 52 26 chr4 40477132 40477287 -161851060 + (TA)n Simple_repeat Simple_repeat 1 159 0 222 165 24 12 chr4 40477298 40477383 -161850964 + (TATAA)n Simple_repeat Simple_repeat 1 86 0 216 195 34 34 chr4 40477433 40477551 -161850796 + (TA)n Simple_repeat Simple_repeat 1 118 0 1960 130 18 0 chr4 40477646 40477923 -161850424 + AluSq SINE Alu 1 282 -31 207 0 0 0 chr4 40477926 40477949 -161850398 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 232 132 0 0 chr4 40479335 40479373 -161848974 + LTR50 LTR ERVL 1 38 -757 476 223 284 0 chr4 40479503 40479700 -161848647 + LTR50 LTR ERVL 215 467 -328 249 237 26 0 chr4 40479787 40479863 -161848484 + LTR33A LTR ERVL 421 498 -25 24 0 0 0 chr4 40479961 40479985 -161848362 + AT_rich Low_complexity Low_complexity 1 24 0 537 232 0 0 chr4 40480398 40480497 -161847850 + FLAM_A SINE Alu 1 99 -43 2205 140 14 14 chr4 40480549 40480913 -161847434 - THE1B LTR MaLR 0 364 1 517 296 40 13 chr4 40480989 40481141 -161847206 + LTR52 LTR ERVL 1 156 -265 1855 50 0 5 chr4 40481167 40481387 -161846960 - AluY SINE Alu -18 293 75 1047 190 15 0 chr4 40481481 40481676 -161846671 + LTR52 LTR ERVL 207 404 -17 1950 110 0 0 chr4 40481676 40481931 -161846416 + AluSq SINE Alu 36 290 -23 2355 249 57 16 chr4 40481935 40482562 -161845785 + LTR52-int LTR ERVL 20 672 -2884 2916 230 31 17 chr4 40482766 40483394 -161844953 + LTR52-int LTR ERVL 1117 1760 -3925 2209 194 24 5 chr4 40483394 40483812 -161844535 + MSTB LTR MaLR 1 426 0 2916 230 31 17 chr4 40483812 40483960 -161844387 + LTR52-int LTR ERVL 1760 1904 -3781 739 277 12 0 chr4 40483953 40484119 -161844228 + LTR52-int LTR ERVL 2544 2711 -845 * 520 218 73 8 chr4 40484213 40484337 -161844010 + LTR52-int LTR ERVL 3412 3543 -13 1195 256 50 30 chr4 40484368 40484766 -161843581 + LTR52 LTR ERVL 1 406 -15 3852 187 33 22 chr4 40484807 40485159 -161843188 - L1MB2 LINE L1 -8 6163 5816 266 71 0 24 chr4 40485159 40485201 -161843146 + (TA)n Simple_repeat Simple_repeat 2 42 0 2112 106 11 0 chr4 40485201 40485483 -161842864 - AluSx SINE Alu -27 285 1 3852 187 33 22 chr4 40485483 40485956 -161842391 - L1MB2 LINE L1 -354 5817 5328 3246 166 67 2 chr4 40486217 40486827 -161841520 + MER39B LTR ERV1 4 653 0 3139 149 20 13 chr4 40487187 40487960 -161840387 + L1PB4 LINE L1 5008 5791 -365 441 54 0 0 chr4 40487960 40488016 -161840331 + (TA)n Simple_repeat Simple_repeat 1 56 0 243 0 0 0 chr4 40488016 40488043 -161840304 + (CA)n Simple_repeat Simple_repeat 1 27 0 1996 182 11 5 chr4 40488043 40488412 -161839935 + L1PB4 LINE L1 5783 6153 -3 597 144 59 105 chr4 40488594 40488747 -161839600 + LTR23 LTR ERV1 6 151 -286 1472 119 11 60 chr4 40488821 40489106 -161839241 + LTR23 LTR ERV1 167 437 0 190 347 41 41 chr4 40489117 40489215 -161839132 - MIR SINE MIR -114 148 51 1346 175 4 4 chr4 40489471 40489705 -161838642 + MER74A LTR ERVL 325 558 0 336 323 6 24 chr4 40489709 40489873 -161838474 + MIR SINE MIR 94 254 -8 28 48 0 0 chr4 40490321 40490363 -161837984 + AT_rich Low_complexity Low_complexity 1 42 0 406 335 80 0 chr4 40491209 40491385 -161836962 - MIR SINE MIR -6 256 67 3446 156 61 45 chr4 40492963 40493655 -161834692 + L1MC1 LINE L1 5373 6075 -258 771 197 7 33 chr4 40493656 40493808 -161834539 + MLT1A1 LTR MaLR 1 148 -217 849 121 0 0 chr4 40493812 40493936 -161834411 + AluSp/q SINE Alu 182 305 -8 1302 153 43 0 chr4 40493942 40494151 -161834196 + MLT1A1 LTR MaLR 148 365 0 789 246 11 6 chr4 40494151 40494334 -161834013 + L1MC1 LINE L1 6074 6257 -76 1560 75 30 5 chr4 40494344 40494543 -161833804 - AluSq SINE Alu -109 204 1 1778 110 4 18 chr4 40494808 40495080 -161833267 - L1PA10 LINE L1 0 6168 5901 2820 53 68 35 chr4 40495080 40495123 -161833224 + L1PA10 LINE L1 5451 5491 -677 2038 127 7 0 chr4 40495123 40495414 -161832933 + AluSx SINE Alu 3 295 -17 2820 53 68 35 chr4 40495414 40495766 -161832581 + L1PA10 LINE L1 5491 5859 -309 282 227 43 43 chr4 40495766 40495907 -161832440 - MER113 DNA MER1_type? -349 172 32 217 313 10 10 chr4 40495933 40496032 -161832315 - L2 LINE L2 -1052 2262 2164 188 191 0 24 chr4 40496378 40496420 -161831927 - L2 LINE L2 -6 3307 3267 584 215 6 0 chr4 40497135 40497298 -161831049 + (TAGA)n Simple_repeat Simple_repeat 2 165 0 192 290 29 0 chr4 40497394 40497463 -161830884 + MIR SINE MIR 79 149 -113 332 313 124 39 chr4 40497505 40497738 -161830609 - MIR SINE MIR 0 262 10 438 139 14 0 chr4 40498437 40498509 -161829838 + MADE1 DNA Mariner 8 80 0 237 132 0 0 chr4 40498745 40498783 -161829564 + (TATG)n Simple_repeat Simple_repeat 3 40 0 2223 94 6 38 chr4 40498961 40499279 -161829068 - AluSp SINE Alu -5 308 1 360 273 68 37 chr4 40500762 40500923 -161827424 - MIR SINE MIR -89 173 8 1650 172 48 12 chr4 40501429 40501761 -161826586 - MER7A DNA MER2_type -3 343 2 271 373 98 28 chr4 40501764 40502019 -161826328 + L2 LINE L2 2999 3271 -1 640 280 95 13 chr4 40502734 40502969 -161825378 - MIR SINE MIR 0 262 5 2418 77 3 7 chr4 40503114 40503424 -161824923 + AluY SINE Alu 3 311 0 182 154 0 0 chr4 40504158 40504184 -161824163 - L3b LINE CR1 -264 1319 1294 315 290 122 19 chr4 40505419 40505526 -161822821 + MIR SINE MIR 6 123 -139 21 71 0 0 chr4 40506302 40506344 -161822003 + AT_rich Low_complexity Low_complexity 1 42 0 2282 108 0 3 chr4 40506634 40506940 -161821407 + AluSx SINE Alu 1 305 -7 622 176 16 66 chr4 40507247 40507429 -161820918 + MER53 DNA DNA 1 173 -16 992 87 0 16 chr4 40508133 40508259 -161820088 - AluSq/x SINE Alu -189 124 1 27 0 0 0 chr4 40508260 40508287 -161820060 + AT_rich Low_complexity Low_complexity 1 27 0 210 254 51 0 chr4 40510394 40510453 -161817894 + L3 LINE CR1 1516 1577 0 478 143 0 11 chr4 40511015 40511106 -161817241 - L1MA3 LINE L1 0 6305 6216 299 268 37 0 chr4 40511121 40511203 -161817144 - MIR SINE MIR -108 154 70 2279 80 23 7 chr4 40511456 40511758 -161816589 - AluY SINE Alu -4 307 1 291 28 0 0 chr4 40511949 40511985 -161816362 + (TG)n Simple_repeat Simple_repeat 1 36 0 1119 216 79 16 chr4 40512133 40512438 -161815909 + MER2 DNA MER2_type 22 345 0 422 314 128 39 chr4 40512579 40512916 -161815431 - L1MC/D LINE L1 -2138 5670 5304 460 261 188 0 chr4 40513062 40513296 -161815051 - L1ME2 LINE L1 -18 6146 5869 4576 234 81 9 chr4 40513303 40515245 -161813102 - L1ME2 LINE L1 -391 5775 3690 316 225 20 139 chr4 40515254 40515289 -161813058 + LTR41 LTR ERVL 549 587 -186 324 48 0 0 chr4 40515289 40515331 -161813016 + (TG)n Simple_repeat Simple_repeat 2 43 0 316 225 20 139 chr4 40515331 40515446 -161812901 + LTR41 LTR ERVL 587 681 -92 673 246 11 6 chr4 40515687 40515862 -161812485 - MER58A DNA MER1_type -12 212 37 2349 84 3 0 chr4 40516182 40516480 -161811867 - AluSp SINE Alu -14 299 1 505 290 120 0 chr4 40516505 40516688 -161811659 + MIR SINE MIR 7 211 -51 22 0 0 0 chr4 40516768 40516790 -161811557 + AT_rich Low_complexity Low_complexity 1 22 0 310 193 53 70 chr4 40517216 40517229 -161811118 - L1MC4 LINE L1 -124 7918 7906 531 0 0 0 chr4 40517229 40517288 -161811059 + (CTATT)n Simple_repeat Simple_repeat 1 59 0 310 193 53 70 chr4 40517288 40517388 -161810959 - L1MC4 LINE L1 -136 7906 7807 2274 64 0 3 chr4 40517389 40517707 -161810640 + AluY SINE Alu 1 317 0 621 167 54 40 chr4 40517715 40517896 -161810451 - MER31B LTR ERV1 -250 235 7 2294 106 0 3 chr4 40517962 40518273 -161810074 + AluSg SINE Alu 1 310 0 1149 199 171 50 chr4 40519571 40519952 -161808395 - MER31B LTR ERV1 -39 427 1 2468 61 3 0 chr4 40520783 40521079 -161807268 + AluY SINE Alu 1 297 -14 2419 80 0 0 chr4 40521633 40521932 -161806415 + AluY SINE Alu 1 299 -12 1846 192 14 11 chr4 40523796 40524155 -161804192 + MLT1A1 LTR MaLR 4 363 -2 770 227 23 0 chr4 40525416 40525592 -161802755 + MER5A DNA MER1_type 7 186 -3 181 316 0 51 chr4 40525643 40525722 -161802625 + L2 LINE L2 3198 3272 0 238 295 36 86 chr4 40525761 40525900 -161802447 - MER5A DNA MER1_type -2 187 56 312 48 0 0 chr4 40526227 40526269 -161802078 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 1738 139 15 7 chr4 40526280 40526554 -161801793 - AluJb SINE Alu -36 276 1 250 200 148 17 chr4 40529021 40529136 -161799211 - MER113 DNA MER1_type? -349 172 43 3498 200 24 48 chr4 40529475 40529655 -161798692 + L1MB8 LINE L1 5145 5328 -850 2144 138 0 0 chr4 40529655 40529959 -161798388 + AluSx SINE Alu 3 306 -6 3498 200 24 48 chr4 40529959 40530822 -161797525 + L1MB8 LINE L1 5328 6178 0 6152 129 14 8 chr4 40531061 40532553 -161795794 + L1PB1 LINE L1 4667 6170 0 234 377 74 0 chr4 40532689 40532811 -161795536 + L2 LINE L2 3137 3267 -5 2153 129 126 0 chr4 40533768 40534148 -161794199 + MSTA LTR MaLR 1 428 0 3263 177 32 16 chr4 40534177 40534856 -161793491 - L1MB5 LINE L1 -9 6165 5476 409 121 0 30 chr4 40534888 40534954 -161793393 - L1PA8A LINE L1 -6 6125 6062 1591 65 0 0 chr4 40534954 40535169 -161793178 + L1PA8A LINE L1 5845 6059 -72 755 159 88 6 chr4 40535166 40535348 -161792999 - L1MB5 LINE L1 -709 5471 5275 * 7087 198 26 9 chr4 40535345 40537029 -161791318 + L1MB5 LINE L1 3535 5246 -900 4400 144 38 28 chr4 40537005 40537907 -161790440 + L1PA16 LINE L1 5256 6166 0 * 333 0 0 0 chr4 40538628 40538665 -161789682 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 33 0 0 chr4 40538836 40538866 -161789481 + AT_rich Low_complexity Low_complexity 1 30 0 1122 247 20 102 chr4 40540510 40541008 -161787339 + LTR16A1 LTR ERVL 1 457 0 898 352 21 25 chr4 40541009 40541540 -161786807 + HERV16 LTR ERVL 2 530 -4466 497 324 79 33 chr4 40541711 40542286 -161786061 + HERV16 LTR ERVL 3351 3666 -1330 359 203 308 0 chr4 40542648 40542791 -161785556 + MIR SINE MIR 76 262 0 2109 131 9 19 chr4 40543128 40543586 -161784761 + LTR26B LTR ERV1 1 531 0 22 0 0 0 chr4 40543745 40543767 -161784580 + AT_rich Low_complexity Low_complexity 1 22 0 1178 200 90 60 chr4 40543848 40544314 -161784033 + LTR24B LTR ERV1 90 569 -7 391 237 52 21 chr4 40544652 40544749 -161783598 - L2 LINE L2 -8 3305 3206 548 122 0 56 chr4 40544791 40544898 -161783449 - L1PB4 LINE L1 -1 6155 6055 227 315 87 39 chr4 40544908 40545035 -161783312 - MIR3 SINE MIR -21 187 55 2188 69 8 2 chr4 40545575 40545932 -161782415 + LTR7 LTR ERV1 1 448 -2 18222 90 52 15 chr4 40545934 40548815 -161779532 + HERVH LTR ERV1 1 2987 -4726 805 131 41 0 chr4 40548809 40548954 -161779393 + HERVH LTR ERV1 3140 3290 -4423 * 3179 110 6 6 chr4 40548944 40549446 -161778901 + HERVH LTR ERV1 3492 3993 -3720 3998 145 6 1 chr4 40549448 40550104 -161778243 + HERVH LTR ERV1 4488 5146 -2567 1253 134 23 9 chr4 40550108 40550325 -161778022 + HERVH LTR ERV1 5600 5819 -1894 2264 93 48 13 chr4 40550325 40550702 -161777645 + HERVH LTR ERV1 7324 7713 0 2603 74 122 10 chr4 40550702 40551105 -161777242 + LTR7 LTR ERV1 1 448 -2 198 0 0 0 chr4 40552225 40552247 -161776100 + (TTA)n Simple_repeat Simple_repeat 3 24 0 15589 27 1 0 chr4 40552247 40554848 -161773499 - L1PA3 LINE L1 -18 6137 3535 565 299 53 44 chr4 40555216 40555557 -161772790 - L2 LINE L2 -15 3298 2955 32850 102 15 56 chr4 40556003 40562650 -161765697 + L1PA7 LINE L1 2 6154 0 452 221 11 0 chr4 40562884 40562979 -161765368 + L2 LINE L2 3176 3271 -1 419 241 18 112 chr4 40563250 40563420 -161764927 + MIR SINE MIR 90 243 -19 896 269 44 8 chr4 40563453 40563702 -161764645 + MIR SINE MIR 4 261 -1 1106 166 11 5 chr4 40563856 40564043 -161764304 - MER5A DNA MER1_type -1 188 1 225 170 19 19 chr4 40564173 40564226 -161764121 - L2 LINE L2 0 3313 3261 573 217 49 126 chr4 40564258 40564323 -161764024 + MIR SINE MIR 12 80 -182 2210 171 28 5 chr4 40564323 40564710 -161763637 + MSTD LTR MaLR 1 396 0 573 217 49 126 chr4 40564710 40564915 -161763432 + MIR SINE MIR 80 259 -3 1286 196 44 86 chr4 40565400 40565445 -161762902 + MER7A DNA MER2_type 2 47 -2991 1507 183 0 0 chr4 40565445 40565702 -161762645 + AluJb SINE Alu 41 297 -15 1286 196 44 86 chr4 40565702 40566018 -161762329 + MER7A DNA MER2_type 47 346 0 682 216 114 0 chr4 40566021 40566188 -161762159 - MIR SINE MIR -2 260 75 2385 89 0 6 chr4 40566825 40567139 -161761208 + AluSx SINE Alu 1 312 0 901 190 103 10 chr4 40567651 40567846 -161760501 - AluJo SINE Alu -16 296 84 409 276 102 53 chr4 40568142 40568388 -161759959 - MIR SINE MIR -2 260 3 1875 156 0 28 chr4 40568823 40569144 -161759203 + AluJo SINE Alu 1 312 0 2163 107 10 7 chr4 40570586 40570884 -161757463 - AluSx SINE Alu -13 299 1 1882 148 0 19 chr4 40570996 40571314 -161757033 - AluJo SINE Alu 0 312 1 2190 109 13 19 chr4 40571792 40572104 -161756243 - AluSx SINE Alu 0 312 3 2383 92 3 13 chr4 40572200 40572516 -161755831 - AluSp SINE Alu 0 313 1 1654 166 4 11 chr4 40573782 40574060 -161754287 - AluJo SINE Alu -36 276 1 1527 121 128 8 chr4 40574264 40574537 -161753810 - AluSg1 SINE Alu 0 303 1 205 302 116 12 chr4 40575460 40575546 -161752801 + L2 LINE L2 3177 3271 -1 337 129 29 0 chr4 40576216 40576286 -161752061 - L1MB4 LINE L1 0 6180 6109 1673 174 19 29 chr4 40576436 40576746 -161751601 - AluJo SINE Alu -5 307 1 180 280 0 20 chr4 40577380 40577430 -161750917 - MIR SINE MIR 0 262 214 233 347 0 31 chr4 40577565 40577663 -161750684 - MIR SINE MIR -160 102 8 671 213 124 40 chr4 40577876 40578078 -161750269 - MIR SINE MIR 0 262 44 198 303 114 48 chr4 40578181 40578409 -161749938 - L2 LINE L2 -616 2698 2456 194 188 83 21 chr4 40578502 40578550 -161749797 - L2 LINE L2 -1 3312 3262 237 336 55 18 chr4 40578827 40578937 -161749410 + MIR SINE MIR 39 152 -56 244 214 71 0 chr4 40579386 40579456 -161748891 - MIR3 SINE MIR -14 194 120 1809 183 0 7 chr4 40579577 40579877 -161748470 - AluJb SINE Alu -14 298 1 390 306 130 58 chr4 40582149 40582564 -161745783 - L3b LINE CR1 0 1583 1139 212 167 0 0 chr4 40582696 40582738 -161745609 + A-rich Low_complexity Low_complexity 1 42 0 347 329 122 45 chr4 40583026 40583272 -161745075 - L1 LINE L1 -2366 3780 3516 1330 245 55 46 chr4 40583588 40584381 -161743966 - L1ME3 LINE L1 -235 5935 5135 427 253 204 6 chr4 40584447 40584609 -161743738 + L2 LINE L2 3115 3308 -5 2481 209 86 49 chr4 40586502 40586994 -161741353 - L1ME3A LINE L1 -12 6158 5625 369 0 0 0 chr4 40586994 40587035 -161741312 + (CA)n Simple_repeat Simple_repeat 2 42 0 2481 209 86 49 chr4 40587035 40587336 -161741011 - L1ME3A LINE L1 -545 5625 5336 311 304 122 5 chr4 40587527 40587741 -161740606 - L1ME3A LINE L1 -999 5147 4909 21 57 0 0 chr4 40587792 40587827 -161740520 + AT_rich Low_complexity Low_complexity 1 35 0 2467 72 13 0 chr4 40588180 40588484 -161739863 - AluY SINE Alu -3 308 1 989 132 11 58 chr4 40589325 40589514 -161738833 - MER20 DNA MER1_type -38 181 2 232 258 10 20 chr4 40590128 40590215 -161738132 + MIR SINE MIR 53 138 -70 3761 199 28 26 chr4 40590530 40591414 -161736933 - L1MB8 LINE L1 0 6178 5293 430 325 25 39 chr4 40592223 40592426 -161735921 + L2 LINE L2 2693 2892 -422 2147 135 0 0 chr4 40593060 40593372 -161734975 + AluSx SINE Alu 1 312 0 255 31 0 0 chr4 40593613 40593645 -161734702 + (TA)n Simple_repeat Simple_repeat 1 32 0 2157 108 0 0 chr4 40593646 40593934 -161734413 - AluSc SINE Alu -21 288 1 305 138 0 17 chr4 40595046 40595104 -161733243 + (GGAA)n Simple_repeat Simple_repeat 2 58 0 543 271 14 0 chr4 40596551 40596691 -161731656 - MER103 DNA DNA -22 144 3 921 245 34 73 chr4 40597505 40597918 -161730429 - MLT2C1 LTR ERVL 0 397 1 279 0 0 0 chr4 40598006 40598037 -161730310 + (CA)n Simple_repeat Simple_repeat 2 32 0 255 327 50 20 chr4 40598332 40598433 -161729914 - MLT1J LTR MaLR -215 296 193 207 319 0 14 chr4 40598613 40598685 -161729662 + GA-rich Low_complexity Low_complexity 1 71 0 40 0 0 0 chr4 40599457 40599497 -161728850 + AT_rich Low_complexity Low_complexity 1 40 0 2204 78 36 0 chr4 40599801 40600082 -161728265 - AluSc SINE Alu -18 291 1 1293 202 50 29 chr4 40601107 40601324 -161727023 + MLT1B LTR MaLR 3 170 -220 2116 74 0 7 chr4 40601324 40601608 -161726739 + L1PA6 LINE L1 5873 6154 0 1293 202 50 29 chr4 40601608 40601834 -161726513 + MLT1B LTR MaLR 170 390 0 1998 138 68 11 chr4 40603458 40603813 -161724534 + THE1C LTR MaLR 1 375 0 227 350 86 0 chr4 40604352 40604469 -161723878 - L2 LINE L2 -5 3308 3182 3130 96 5 7 chr4 40604999 40605437 -161722910 + L1PA12 LINE L1 5732 6168 0 274 265 81 0 chr4 40605451 40605537 -161722810 - MIR3 SINE MIR -40 168 75 2136 137 0 0 chr4 40605780 40606087 -161722260 + AluSx SINE Alu 1 307 -5 363 136 0 0 chr4 40606471 40606530 -161721817 + (TG)n Simple_repeat Simple_repeat 2 60 0 306 203 74 41 chr4 40606648 40606756 -161721591 - MIR SINE MIR -78 130 19 223 154 0 0 chr4 40607492 40607531 -161720816 + (CACCC)n Simple_repeat Simple_repeat 4 42 0 1877 127 3 3 chr4 40607737 40608055 -161720292 - AluSx SINE Alu 0 318 1 311 229 29 0 chr4 40608416 40608486 -161719861 - L1ME4a LINE L1 -3 6118 6047 326 229 16 3 chr4 40608612 40608684 -161719663 + MIR SINE MIR 18 89 -119 1737 149 10 20 chr4 40608690 40609015 -161719332 - AluSx SINE Alu 0 312 5 195 359 0 26 chr4 40609079 40609157 -161719190 + L2 LINE L2 3238 3313 0 1625 173 10 10 chr4 40609202 40609508 -161718839 - AluJo SINE Alu -6 306 1 636 231 59 35 chr4 40609508 40609677 -161718670 + MIR SINE MIR 86 258 -4 187 313 45 0 chr4 40610040 40610107 -161718240 - MIR SINE MIR -74 188 119 717 151 18 90 chr4 40610619 40610785 -161717562 - MER5A DNA MER1_type 0 189 36 2154 95 20 0 chr4 40611176 40611471 -161716876 + AluSp SINE Alu 1 301 -12 366 262 110 28 chr4 40611945 40612090 -161716257 + MIR3 SINE MIR 31 187 -21 231 172 0 35 chr4 40612496 40612554 -161715793 + (CGGGG)n Simple_repeat Simple_repeat 4 59 0 556 131 10 0 chr4 40614030 40614129 -161714218 - Tigger2 DNA MER2_type -2617 101 2 279 358 204 11 chr4 40614406 40614582 -161713765 + MIR SINE MIR 53 262 0 925 297 15 4 chr4 40614592 40614851 -161713496 + MIR SINE MIR 1 262 0 281 329 73 0 chr4 40614882 40615019 -161713328 - MIR SINE MIR -6 256 110 285 303 50 54 chr4 40615384 40615701 -161712646 - L2 LINE L2 -34 3279 2964 2244 110 0 3 chr4 40616211 40616520 -161711827 - AluSg SINE Alu -2 308 1 1795 257 46 31 chr4 40616811 40617351 -161710996 - MER77 LTR ERV1 -4 601 54 999 139 39 0 chr4 40617384 40617564 -161710783 - L1MA7 LINE L1 0 6291 6105 1106 164 19 5 chr4 40617564 40617773 -161710574 + L1 LINE L1 2258 2469 -3677 210 71 0 0 chr4 40617982 40618010 -161710337 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1813 165 7 7 chr4 40618032 40618335 -161710012 + AluSx SINE Alu 1 303 -9 207 350 43 17 chr4 40618429 40618546 -161709801 - L2 LINE L2 -518 2796 2677 1080 274 53 35 chr4 40619385 40619783 -161708564 - MLT1D LTR MaLR -100 405 1 180 111 0 0 chr4 40619905 40619932 -161708415 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 200 247 123 0 chr4 40620837 40620918 -161707429 + MIR3 SINE MIR 107 197 -11 1690 266 89 8 chr4 40621724 40622238 -161706109 - MLT1G LTR MaLR 0 590 35 599 158 8 0 chr4 40623167 40623294 -161705053 + (CA)n Simple_repeat Simple_repeat 1 128 0 305 336 22 0 chr4 40624608 40624745 -161703602 - MIR SINE MIR -109 153 14 200 250 0 0 chr4 40626366 40626410 -161701937 - MIR SINE MIR -58 150 107 2277 61 10 3 chr4 40626544 40626841 -161701506 + AluSp SINE Alu 1 299 -14 1723 158 3 37 chr4 40627893 40628191 -161700156 + AluJb SINE Alu 5 292 -20 325 265 88 7 chr4 40628233 40628369 -161699978 - L1ME4a LINE L1 -52 6069 5923 387 60 0 0 chr4 40629919 40629969 -161698378 + (CATA)n Simple_repeat Simple_repeat 2 51 0 367 256 11 17 chr4 40630163 40630343 -161698004 + (TG)n Simple_repeat Simple_repeat 2 180 0 277 267 11 17 chr4 40630362 40630542 -161697805 + (TG)n Simple_repeat Simple_repeat 2 180 0 310 257 11 17 chr4 40630565 40630744 -161697603 + (TG)n Simple_repeat Simple_repeat 2 179 0 304 298 62 65 chr4 40631202 40631571 -161696776 - MLT1I LTR MaLR -4 405 38 2085 113 0 3 chr4 40631680 40631982 -161696365 + AluSx SINE Alu 1 301 -11 261 240 47 93 chr4 40632683 40632812 -161695535 - MLT1J LTR MaLR 0 511 389 264 161 23 0 chr4 40632959 40633016 -161695331 - MLT1J1 LTR MaLR -324 122 71 3594 53 0 15 chr4 40634173 40634628 -161693719 - LTR7 LTR ERV1 -2 448 1 2399 99 39 13 chr4 40634628 40635010 -161693337 - HERVH LTR ERV1 0 7713 7322 1298 118 43 0 chr4 40635008 40635219 -161693128 - HERVH LTR ERV1 -1894 5819 5600 * 4466 130 0 1 chr4 40635220 40635883 -161692464 - HERVH LTR ERV1 -2564 5149 4488 3529 83 0 6 chr4 40635885 40636390 -161691957 - HERVH LTR ERV1 -3720 3993 3492 946 133 7 0 chr4 40636380 40636530 -161691817 - HERVH LTR ERV1 -4423 3290 3140 * 20035 93 13 18 chr4 40636524 40639505 -161688842 - HERVH LTR ERV1 -4726 2987 22 3260 80 23 7 chr4 40639542 40639980 -161688367 - LTR7 LTR ERV1 -4 446 2 617 298 54 10 chr4 40640019 40640314 -161688033 - L1MC4a LINE L1 -1942 5866 5559 293 271 104 62 chr4 40640699 40640782 -161687565 + L2 LINE L2 3143 3237 -76 2141 79 0 4 chr4 40640782 40641093 -161687254 + AluSx SINE Alu 7 316 0 293 271 104 62 chr4 40641093 40641152 -161687195 + L2 LINE L2 3237 3292 -21 314 319 101 29 chr4 40641384 40641522 -161686825 - L1MC4a LINE L1 -2392 5416 5269 831 173 20 7 chr4 40641651 40641801 -161686546 - FRAM SINE Alu -5 171 20 405 0 0 0 chr4 40644991 40645036 -161683311 + (CA)n Simple_repeat Simple_repeat 2 46 0 246 284 60 26 chr4 40650049 40650165 -161678182 - L1ME4a LINE L1 -28 6093 5974 1837 105 8 4 chr4 40650479 40650737 -161677610 - AluSc SINE Alu -50 259 1 741 227 96 23 chr4 40652554 40652774 -161675573 - L1MC5 LINE L1 -1114 6847 6612 1759 161 0 26 chr4 40653054 40653358 -161674989 - AluJb SINE Alu -16 296 1 655 322 103 26 chr4 40653504 40653929 -161674418 + L2 LINE L2 759 1216 -2098 736 219 0 0 chr4 40653950 40654078 -161674269 - FLAM_A SINE Alu -2 131 4 193 392 66 6 chr4 40654099 40654280 -161674067 + L2 LINE L2 1736 1927 -1387 834 197 0 0 chr4 40654757 40654904 -161673443 - FAM SINE Alu -37 148 2 296 296 0 6 chr4 40655749 40655921 -161672426 + (TCCA)n Simple_repeat Simple_repeat 2 172 0 206 289 0 0 chr4 40655937 40655989 -161672358 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 264 77 0 0 chr4 40656024 40656063 -161672284 + (TCCA)n Simple_repeat Simple_repeat 1 39 0 1715 108 0 21 chr4 40657638 40657878 -161670469 - AluSg/x SINE Alu -7 303 69 436 335 56 37 chr4 40658591 40658806 -161669541 + L2 LINE L2 2569 2787 -527 21 0 0 0 chr4 40659742 40659763 -161668584 + AT_rich Low_complexity Low_complexity 1 21 0 262 241 160 0 chr4 40659765 40659885 -161668462 - MIR SINE MIR -16 246 100 313 131 47 0 chr4 40660752 40660859 -161667488 + (TA)n Simple_repeat Simple_repeat 1 112 0 320 200 14 14 chr4 40660861 40660931 -161667416 - L1MCa LINE L1 -4362 2064 1995 658 101 46 0 chr4 40660935 40661245 -161667102 + (TA)n Simple_repeat Simple_repeat 1 324 0 284 48 24 0 chr4 40661258 40661300 -161667047 + (TA)n Simple_repeat Simple_repeat 2 44 0 375 259 167 19 chr4 40662057 40662219 -161666128 - MIR SINE MIR 0 262 77 183 269 19 0 chr4 40662447 40662499 -161665848 + MIR SINE MIR 114 166 -96 1555 235 42 22 chr4 40662500 40662951 -161665396 - MLT1J LTR MaLR -28 483 24 2240 90 3 10 chr4 40663202 40663502 -161664845 - AluSg SINE Alu -12 298 1 318 292 180 25 chr4 40663761 40663922 -161664425 + MIR SINE MIR 63 248 -14 1611 187 103 29 chr4 40664048 40664466 -161663881 + L1ME2 LINE L1 5706 6154 -10 816 98 0 8 chr4 40664471 40664604 -161663743 + L1MB3 LINE L1 5318 5449 -734 256 167 0 19 chr4 40664604 40664658 -161663689 + MSTB1 LTR MaLR 1 53 -379 240 62 0 0 chr4 40664682 40664714 -161663633 + MSTB1 LTR MaLR 22 53 -373 239 86 0 0 chr4 40664707 40664742 -161663605 + MSTB LTR MaLR 19 53 -379 * 273 54 0 0 chr4 40664733 40664770 -161663577 + MSTB LTR MaLR 17 53 -373 239 86 0 0 chr4 40664791 40664826 -161663521 + MSTB LTR MaLR 19 53 -379 * 2061 163 25 11 chr4 40664811 40665211 -161663136 + MSTB1 LTR MaLR 10 392 -40 1286 134 104 5 chr4 40665211 40665547 -161662800 + LTR47A LTR ERVL 1 452 0 4255 144 26 1 chr4 40665575 40666310 -161662037 + L1MB3 LINE L1 5427 6179 -4 286 278 74 37 chr4 40666667 40666775 -161661572 - L2 LINE L2 0 3313 3202 385 288 141 61 chr4 40667732 40668505 -161659842 + L2 LINE L2 2453 3270 -2 651 297 59 41 chr4 40668535 40668976 -161659371 + LTR16B LTR ERVL 1 449 -15 1503 174 26 40 chr4 40669260 40669564 -161658783 + AluJo SINE Alu 5 304 -8 398 281 6 31 chr4 40669591 40669751 -161658596 - MER112 DNA MER1_type -99 161 6 228 239 303 0 chr4 40670541 40670650 -161657697 + MIR3 SINE MIR 23 164 -44 * 338 246 27 27 chr4 40670647 40670757 -161657590 - MIR3 SINE MIR -2 206 97 415 314 64 70 chr4 40671106 40671562 -161656785 - MLT1K LTR MaLR -3 585 133 251 132 0 0 chr4 40671958 40671996 -161656351 + MLT1L LTR MaLR 350 387 -228 237 242 61 10 chr4 40672060 40672159 -161656188 + MLT1L LTR MaLR 512 615 0 392 191 56 32 chr4 40672368 40672494 -161655853 - L1 LINE L1 -866 5280 5152 1937 138 3 14 chr4 40673249 40673540 -161654807 + AluSx SINE Alu 1 288 -24 1757 185 42 44 chr4 40673645 40674201 -161654146 - MLT2A2 LTR ERVL 0 554 1 1435 159 27 0 chr4 40676012 40676269 -161652078 + L1PA16 LINE L1 5894 6157 -9 221 100 80 0 chr4 40676269 40676319 -161652028 + (TA)n Simple_repeat Simple_repeat 1 54 0 22 35 0 0 chr4 40677815 40677844 -161650503 + AT_rich Low_complexity Low_complexity 1 29 0 753 273 16 5 chr4 40678641 40678835 -161649512 - MIR SINE MIR -21 241 46 250 178 0 67 chr4 40679261 40679396 -161648951 + (TTA)n Simple_repeat Simple_repeat 2 127 0 21 0 0 0 chr4 40679690 40679711 -161648636 + AT_rich Low_complexity Low_complexity 1 21 0 2021 147 17 0 chr4 40680022 40680321 -161648026 - AluSx SINE Alu -8 304 1 1567 290 53 43 chr4 40680409 40681308 -161647039 + L1ME LINE L1 7 918 -5152 2210 105 10 0 chr4 40681308 40681604 -161646743 + AluSg SINE Alu 1 299 -11 1567 290 53 43 chr4 40681604 40681703 -161646644 + L1ME LINE L1 918 1015 -5055 284 330 9 0 chr4 40681969 40682075 -161646272 + L1ME LINE L1 5477 5583 -579 198 171 0 0 chr4 40682219 40682260 -161646087 + (CA)n Simple_repeat Simple_repeat 2 42 0 392 281 46 49 chr4 40682629 40682914 -161645433 - L1ME2 LINE L1 -20 6144 5861 309 211 13 26 chr4 40682938 40683014 -161645333 - L1MCa LINE L1 -4363 2063 1989 443 203 11 11 chr4 40683026 40683203 -161645144 + (TA)n Simple_repeat Simple_repeat 2 178 0 293 300 45 31 chr4 40683203 40683426 -161644921 - L1ME2 LINE L1 -327 5837 5612 2336 66 7 3 chr4 40683439 40683741 -161644606 - AluY SINE Alu -8 303 1 2038 225 28 35 chr4 40683743 40684285 -161644062 + MER44D DNA MER2_type 1 593 -12 3138 236 25 16 chr4 40684332 40685259 -161643088 + L1ME LINE L1 2550 3484 -2596 620 169 70 95 chr4 40685252 40685336 -161643011 + L1MC5 LINE L1 7648 7733 -228 * 1984 105 61 0 chr4 40685336 40685613 -161642734 + AluSx SINE Alu 1 294 -18 620 169 70 95 chr4 40685613 40685801 -161642546 + L1MC5 LINE L1 7733 7913 -48 1926 156 0 23 chr4 40685812 40686114 -161642233 - AluSx SINE Alu -14 298 4 1183 220 226 36 chr4 40686133 40686747 -161641600 + HAL1 LINE L1 1140 1870 -637 258 237 49 112 chr4 40686846 40686948 -161641399 + HAL1 LINE L1 2043 2125 -382 1847 164 3 20 chr4 40686948 40687246 -161641101 + AluJo SINE Alu 1 293 -19 258 237 49 112 chr4 40687246 40687367 -161640980 + HAL1 LINE L1 2125 2252 -255 1802 157 23 26 chr4 40687379 40687684 -161640663 + AluJo SINE Alu 1 304 -8 2435 54 0 41 chr4 40687801 40688116 -161640231 - AluY SINE Alu -9 302 1 2230 107 3 3 chr4 40688736 40689036 -161639311 + AluSq SINE Alu 1 300 -13 759 284 81 49 chr4 40690477 40691047 -161637300 - L1MCa LINE L1 -5281 1135 548 2120 117 0 0 chr4 40691621 40691928 -161636419 + AluSx SINE Alu 1 307 0 2573 74 0 3 chr4 40692155 40692464 -161635883 + AluSq SINE Alu 1 308 -5 1604 198 0 18 chr4 40692524 40692807 -161635540 - AluSx SINE Alu -15 297 20 1310 206 29 39 chr4 40693096 40693407 -161634940 + AluJo SINE Alu 1 308 -4 2034 130 23 10 chr4 40693804 40694112 -161634235 + AluSx SINE Alu 1 312 0 1475 140 34 93 chr4 40694123 40694445 -161633902 + AluJb SINE Alu 1 303 -9 1969 73 91 22 chr4 40694596 40694871 -161633476 + AluSq SINE Alu 6 299 -14 198 0 0 0 chr4 40695817 40695839 -161632508 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3504 204 74 11 chr4 40696014 40696639 -161631708 + L1ME LINE L1 3647 4356 -1724 2092 134 0 3 chr4 40696639 40696938 -161631409 + AluSq SINE Alu 2 299 -14 3504 204 74 11 chr4 40696938 40697285 -161631062 + L1ME LINE L1 4356 4680 -1400 915 198 119 64 chr4 40697303 40697509 -161630838 + L1ME LINE L1 4891 5084 -1016 1693 214 0 0 chr4 40697509 40697812 -161630535 + AluJo SINE Alu 1 303 -9 915 198 119 64 chr4 40697812 40698137 -161630210 + L1ME LINE L1 5084 5458 -642 * 16608 135 17 94 chr4 40698131 40701965 -161626382 - L1P LINE L1 -2597 3549 12 380 261 43 26 chr4 40702008 40702123 -161626224 - MIR SINE MIR -141 121 5 487 265 73 0 chr4 40702197 40702333 -161626014 - MIR SINE MIR -56 206 61 264 326 99 23 chr4 40703092 40703220 -161625127 - MIR SINE MIR -56 152 30 21 0 0 0 chr4 40703724 40703745 -161624602 + AT_rich Low_complexity Low_complexity 1 21 0 240 346 0 48 chr4 40703807 40703911 -161624436 - MIR3 SINE MIR -6 202 104 2209 161 3 8 chr4 40704102 40704469 -161623878 - MLT1A1 LTR MaLR 0 365 1 242 278 41 21 chr4 40705167 40705264 -161623083 + LTR67 LTR ERVL 123 221 -336 373 213 56 120 chr4 40705318 40705534 -161622813 + LTR67 LTR ERVL 356 557 0 329 339 0 9 chr4 40705660 40705769 -161622578 + MIR SINE MIR 35 142 -120 1922 173 54 5 chr4 40705784 40706155 -161622192 + MLT1B LTR MaLR 1 389 -1 760 171 0 0 chr4 40706182 40706305 -161622042 + FLAM_C SINE Alu 2 124 -9 186 247 169 34 chr4 40706328 40706417 -161621930 + MIR SINE MIR 157 257 -5 455 309 48 39 chr4 40707063 40707293 -161621054 + L1MC/D LINE L1 5449 5680 -2128 881 160 0 0 chr4 40707324 40707455 -161620892 - FLAM_C SINE Alu -10 133 3 2240 114 3 0 chr4 40707713 40708010 -161620337 - AluSx SINE Alu -14 298 1 482 208 0 28 chr4 40708010 40708116 -161620231 - L1 LINE L1 -3058 3088 2986 894 197 39 35 chr4 40708786 40708989 -161619358 - MER20 DNA MER1_type -14 205 2 499 292 55 23 chr4 40709090 40709309 -161619038 + MIR SINE MIR 24 249 -13 2149 121 0 3 chr4 40709499 40709797 -161618550 + AluSx SINE Alu 1 297 -15 2264 101 0 38 chr4 40710455 40710772 -161617575 + AluSx SINE Alu 1 305 -7 236 179 134 15 chr4 40710787 40710854 -161617493 + Charlie7 DNA MER1_type 2063 2137 -475 381 269 72 45 chr4 40710970 40711193 -161617154 + HAL1 LINE L1 1234 1462 -1045 1437 179 0 4 chr4 40711213 40711448 -161616899 - Tigger2a DNA MER2_type 0 434 201 1126 146 0 0 chr4 40711453 40711624 -161616723 + FRAM SINE Alu 1 171 -5 958 132 143 37 chr4 40711628 40711817 -161616530 - Tigger2a DNA MER2_type -225 209 1 1563 212 102 28 chr4 40711817 40712247 -161616100 - MLT1C LTR MaLR 0 467 6 614 269 104 10 chr4 40712252 40712453 -161615894 + HAL1 LINE L1 1474 1693 -814 28 61 0 0 chr4 40712571 40712620 -161615727 + AT_rich Low_complexity Low_complexity 1 49 0 1233 224 118 41 chr4 40712691 40713518 -161614829 - HAL1 LINE L1 -85 2422 1425 479 245 180 61 chr4 40713523 40713768 -161614579 + MLT1J LTR MaLR 205 478 -33 420 288 91 64 chr4 40714622 40714975 -161613372 + L1M4 LINE L1 2382 2724 -3422 4171 98 8 16 chr4 40714975 40715610 -161612737 - L1MA4A LINE L1 0 6303 5674 420 288 91 64 chr4 40715610 40716190 -161612157 + L1M4 LINE L1 2724 3340 -2806 1994 150 38 9 chr4 40716531 40716871 -161611476 + MLT1A1 LTR MaLR 1 350 -15 186 118 0 0 chr4 40716999 40717033 -161611314 + (TC)n Simple_repeat Simple_repeat 2 35 0 533 260 35 98 chr4 40718014 40718095 -161610252 + MLT1I LTR MaLR 71 156 -253 1685 172 0 41 chr4 40718095 40718437 -161609910 - AluJo SINE Alu 0 312 1 533 260 35 98 chr4 40718437 40718701 -161609646 + MLT1I LTR MaLR 156 394 -15 262 298 73 73 chr4 40718773 40719018 -161609329 - L2 LINE L2 -1 3271 3027 183 80 0 0 chr4 40721304 40721329 -161607018 + (TG)n Simple_repeat Simple_repeat 2 26 0 817 175 2 10 chr4 40721345 40721505 -161606842 - MLT2B1 LTR ERVL -39 476 318 385 266 11 0 chr4 40721507 40721601 -161606746 - MLT2B1 LTR ERVL -356 164 70 1137 147 0 0 chr4 40721601 40721764 -161606583 - AluJb SINE Alu -16 296 134 327 240 40 0 chr4 40721764 40721839 -161606508 - MLT2B1 LTR ERVL -441 79 2 27 29 0 0 chr4 40723102 40723136 -161605211 + AT_rich Low_complexity Low_complexity 1 34 0 210 231 0 19 chr4 40723525 40723577 -161604770 + C-rich Low_complexity Low_complexity 5 55 0 2271 214 28 6 chr4 40724041 40724546 -161603801 + LTR53 LTR ERVL 4 519 0 221 233 27 14 chr4 40724596 40724669 -161603678 + MIR SINE MIR 80 153 -109 245 258 192 17 chr4 40725336 40725456 -161602891 + MIR SINE MIR 65 205 -57 205 326 42 0 chr4 40725783 40725878 -161602469 + CT-rich Low_complexity Low_complexity 5 103 0 181 333 13 0 chr4 40727454 40727532 -161600815 + L2 LINE L2 3194 3272 0 1969 197 61 14 chr4 40727579 40728020 -161600327 - MLT1C LTR MaLR 0 467 6 355 294 69 91 chr4 40728346 40728754 -161599593 + HAL1 LINE L1 63 461 -2046 287 287 16 41 chr4 40728910 40729032 -161599315 + MIR SINE MIR 47 165 -97 324 278 168 37 chr4 40729350 40729732 -161598615 - L2 LINE L2 -25 3288 2857 189 245 19 0 chr4 40730279 40730332 -161598015 + MIR SINE MIR 50 103 -159 253 301 146 8 chr4 40732649 40732772 -161595575 - MER91C DNA MER1_type 0 140 1 397 273 12 22 chr4 40733643 40734083 -161594264 + CT-rich Low_complexity Low_complexity 1 435 0 489 315 50 14 chr4 40735046 40735268 -161593079 - MIR SINE MIR -16 246 17 662 157 96 0 chr4 40735431 40735546 -161592801 - MER63 DNA MER1_type -84 752 1 193 224 41 0 chr4 40737315 40737364 -161590983 + L2 LINE L2 3262 3312 -1 203 229 36 24 chr4 40737635 40737718 -161590629 + GA-rich Low_complexity Low_complexity 6 89 0 216 156 44 0 chr4 40738760 40738805 -161589542 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2269 92 0 4 chr4 40739030 40739341 -161589006 - AluSx SINE Alu 0 312 3 1779 172 3 14 chr4 40739348 40739639 -161588708 - AluJb SINE Alu -24 288 1 746 183 0 8 chr4 40740227 40740353 -161587994 - FLAM_C SINE Alu -17 126 2 365 315 4 0 chr4 40740524 40740764 -161587583 + (CA)n Simple_repeat Simple_repeat 1 241 0 186 208 0 0 chr4 40740806 40740854 -161587493 + (CA)n Simple_repeat Simple_repeat 2 49 0 492 236 188 14 chr4 40740933 40741077 -161587270 - MER5A DNA MER1_type -12 177 9 23 33 0 0 chr4 40741204 40741234 -161587113 + AT_rich Low_complexity Low_complexity 1 30 0 585 329 88 7 chr4 40741590 40742020 -161586327 + L2 LINE L2 2606 3073 -240 1740 114 122 0 chr4 40742172 40742427 -161585920 + AluSq SINE Alu 1 286 -27 6612 46 2 3 chr4 40742427 40743887 -161584460 + L1PA5 LINE L1 4587 6045 -109 553 226 37 12 chr4 40743887 40744051 -161584296 + MIR SINE MIR 92 259 -3 189 107 0 0 chr4 40745049 40745077 -161583270 + (CTATT)n Simple_repeat Simple_repeat 3 30 0 321 289 26 46 chr4 40745244 40745396 -161582951 - MIR SINE MIR -46 216 68 22 0 0 0 chr4 40746839 40746861 -161581486 + AT_rich Low_complexity Low_complexity 1 22 0 397 299 126 0 chr4 40746891 40747065 -161581282 - MIR SINE MIR -56 206 11 216 0 0 0 chr4 40749334 40749358 -161578989 + (TA)n Simple_repeat Simple_repeat 2 25 0 276 224 0 61 chr4 40749358 40749456 -161578891 + L1MC4 LINE L1 6614 6705 -1337 31 0 0 0 chr4 40750094 40750125 -161578222 + AT_rich Low_complexity Low_complexity 1 31 0 1053 156 62 58 chr4 40751518 40751612 -161576735 + MER31-int LTR ERV1 3985 4077 -859 2540 81 0 0 chr4 40751612 40751919 -161576428 + AluY SINE Alu 1 307 -4 1053 156 62 58 chr4 40751919 40752048 -161576299 + MER31-int LTR ERV1 4077 4209 -727 295 210 136 12 chr4 40752067 40752148 -161576199 + LTR37A LTR ERV1 1 91 -335 986 186 16 78 chr4 40752159 40752401 -161575946 + MER31-int LTR ERV1 4340 4566 -370 1667 181 88 60 chr4 40752434 40752887 -161575460 + MER31B LTR ERV1 1 466 0 2299 86 0 49 chr4 40753622 40753947 -161574400 - AluSc SINE Alu 0 309 1 30 27 0 0 chr4 40754473 40754510 -161573837 + AT_rich Low_complexity Low_complexity 1 37 0 2250 97 31 0 chr4 40754608 40754896 -161573451 + AluSq SINE Alu 1 297 -16 370 273 55 0 chr4 40754968 40755078 -161573269 - MIR SINE MIR -136 126 11 2344 48 65 3 chr4 40755259 40755550 -161572797 + AluY SINE Alu 3 311 0 1812 109 0 127 chr4 40756316 40756656 -161571691 + AluSx SINE Alu 1 297 -5 23 33 0 0 chr4 40757051 40757081 -161571266 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 40757245 40757273 -161571074 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 40757713 40757738 -161570609 + AT_rich Low_complexity Low_complexity 1 25 0 467 213 0 0 chr4 40757920 40758014 -161570333 - MER92B LTR ERV1 0 636 543 1213 215 124 43 chr4 40758033 40758405 -161569942 - MER92B LTR ERV1 -233 403 2 1969 124 3 10 chr4 40758589 40758887 -161569460 + AluSx SINE Alu 1 296 -16 254 230 36 6 chr4 40759329 40759494 -161568853 + (TA)n Simple_repeat Simple_repeat 2 171 0 22 0 0 0 chr4 40759498 40759520 -161568827 + AT_rich Low_complexity Low_complexity 1 22 0 2330 77 0 3 chr4 40759525 40759825 -161568522 + AluSc SINE Alu 2 300 -9 240 257 28 9 chr4 40759857 40759966 -161568381 + (TA)n Simple_repeat Simple_repeat 1 111 0 209 278 217 17 chr4 40759981 40760096 -161568251 - L3 LINE CR1 -224 1353 1216 389 246 108 0 chr4 40761224 40761354 -161566993 - L1MD2 LINE L1 -2 6357 6214 980 151 104 0 chr4 40761368 40761560 -161566787 - L1PA16 LINE L1 -17 6149 5938 677 240 64 80 chr4 40761554 40761769 -161566578 - L1MD2 LINE L1 -131 6228 6018 * 2259 91 0 0 chr4 40761769 40762065 -161566282 + AluSg SINE Alu 1 296 -14 677 240 64 80 chr4 40762065 40762162 -161566185 - L1MD2 LINE L1 -341 6018 5921 2536 149 39 5 chr4 40762180 40762757 -161565590 - L1M2 LINE L1 -577 5714 5115 1657 155 44 26 chr4 40762759 40763101 -161565246 + L1MA7 LINE L1 5938 6285 -6 1227 244 16 142 chr4 40763118 40763822 -161564525 - L1MB3 LINE L1 -255 5928 5314 313 294 94 19 chr4 40764122 40764282 -161564065 + MIR SINE MIR 91 262 0 1551 179 3 27 chr4 40764566 40764862 -161563485 - AluJo SINE Alu -23 289 1 215 292 99 109 chr4 40765407 40765599 -161562748 - L2 LINE L2 -493 2821 2632 296 350 43 21 chr4 40765885 40766071 -161562276 + L2 LINE L2 1840 2029 -1285 228 209 58 122 chr4 40766409 40766548 -161561799 + L2 LINE L2 2915 3044 -228 370 247 0 34 chr4 40766944 40767033 -161561314 - MIR SINE MIR -121 141 56 215 279 16 0 chr4 40767397 40767458 -161560889 + GA-rich Low_complexity Low_complexity 3 64 0 229 281 124 11 chr4 40768156 40768245 -161560102 - L2 LINE L2 -5 3308 3210 4675 170 33 13 chr4 40768514 40769275 -161559072 + L1MB3 LINE L1 4697 5441 -742 333 82 0 0 chr4 40769275 40769324 -161559023 + (CA)n Simple_repeat Simple_repeat 2 50 0 4675 170 33 13 chr4 40769324 40769898 -161558449 + L1MB3 LINE L1 5441 6064 -119 2942 116 29 9 chr4 40769898 40770354 -161557993 + MER4C LTR ERV1 1 465 0 4675 170 33 13 chr4 40770354 40770467 -161557880 + L1MB3 LINE L1 6064 6173 -10 206 200 0 0 chr4 40770468 40770503 -161557844 + (TG)n Simple_repeat Simple_repeat 2 36 0 326 186 12 58 chr4 40770503 40770589 -161557758 + L1MC4 LINE L1 6172 6253 -1789 * 435 168 0 93 chr4 40770587 40770694 -161557653 - L1MC3 LINE L1 -1805 5980 5884 891 184 60 0 chr4 40770694 40770862 -161557485 + L1MC3 LINE L1 6224 6401 -1384 389 104 0 90 chr4 40770863 40770930 -161557417 - MER50 LTR ERV1 -30 704 644 230 296 34 34 chr4 40771360 40771448 -161556899 - MIR3 SINE MIR -9 199 112 192 268 0 36 chr4 40773198 40773254 -161555093 - MIR3 SINE MIR -54 154 101 2202 98 0 31 chr4 40774177 40774495 -161553852 - AluSc SINE Alu 0 309 2 192 311 81 0 chr4 40774571 40774645 -161553702 - L2 LINE L2 -5 3308 3229 182 281 158 24 chr4 40778364 40778446 -161549901 - MIR SINE MIR -59 149 57 500 275 17 51 chr4 40778461 40778639 -161549708 - MIR3 SINE MIR -5 203 32 294 238 16 0 chr4 40778641 40778704 -161549643 - MIR3 SINE MIR -52 156 93 222 347 0 13 chr4 40779622 40779697 -161548650 - L2 LINE L2 -6 3266 3193 252 0 0 0 chr4 40781718 40781746 -161546601 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2267 84 0 16 chr4 40782638 40782948 -161545399 + AluSp SINE Alu 1 305 -8 2014 116 41 0 chr4 40783806 40784100 -161544247 + AluSx SINE Alu 1 306 -6 693 180 52 82 chr4 40787029 40787223 -161541124 + MLT1E2 LTR MaLR 1 188 -438 731 116 50 16 chr4 40787253 40787374 -161540973 + FLAM_C SINE Alu 5 129 -14 1607 190 50 62 chr4 40787377 40787535 -161540812 + MLT1E2 LTR MaLR 235 394 -232 2250 61 3 71 chr4 40787535 40787861 -161540486 - AluSp SINE Alu -9 304 1 1607 190 50 62 chr4 40787861 40788086 -161540261 + MLT1E2 LTR MaLR 394 613 -13 407 250 0 22 chr4 40788321 40788413 -161539934 + MER21B LTR ERV1 3 92 -771 2342 78 0 0 chr4 40788434 40788728 -161539619 + AluSc SINE Alu 1 294 -15 2154 210 75 124 chr4 40788730 40789478 -161538869 + MER21B LTR ERV1 24 724 -139 300 53 0 0 chr4 40789478 40789516 -161538831 + (GGATG)n Simple_repeat Simple_repeat 5 42 0 2154 210 75 124 chr4 40789516 40789639 -161538708 + MER21B LTR ERV1 724 852 -11 181 365 0 0 chr4 40789657 40789720 -161538627 + L2 LINE L2 3208 3270 -2 443 229 0 7 chr4 40789980 40790120 -161538227 + (CCCTAA)n Simple_repeat Simple_repeat 1 139 0 219 355 0 6 chr4 40790220 40790389 -161537958 + (ACTTG)n Simple_repeat Simple_repeat 5 172 0 204 320 13 13 chr4 40790987 40791137 -161537210 + (ACTTG)n Simple_repeat Simple_repeat 4 153 0 255 326 6 6 chr4 40791201 40791379 -161536968 + (ACTTG)n Simple_repeat Simple_repeat 2 179 0 1030 166 0 0 chr4 40791972 40792141 -161536206 - AluJ SINE Alu -11 301 133 257 0 30 0 chr4 40792141 40792174 -161536173 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1778 139 4 7 chr4 40792174 40792455 -161535892 - AluSg SINE Alu -30 280 1 254 98 24 0 chr4 40792473 40792514 -161535833 - MADE1 DNA Mariner 0 80 39 771 177 39 0 chr4 40792514 40792644 -161535703 - AluJ SINE Alu -176 136 2 273 183 0 0 chr4 40792670 40792730 -161535617 + (CCCTAA)n Simple_repeat Simple_repeat 5 64 0 346 216 0 8 chr4 40792835 40792927 -161535420 + L1MC/D LINE L1 3668 3754 -2392 1089 204 0 0 chr4 40792937 40793113 -161535234 + MER8 DNA MER2_type 1 176 -63 2168 96 7 0 chr4 40793212 40793503 -161534844 + AluSp SINE Alu 1 293 -20 458 299 206 15 chr4 40793549 40793947 -161534400 + L1MC4 LINE L1 7373 7846 -196 267 253 24 0 chr4 40793983 40794066 -161534281 + L1MC4 LINE L1 7956 8040 -2 423 292 25 79 chr4 40794271 40794511 -161533836 - TAR1 Satellite telomeric -154 1957 1731 1984 96 4 0 chr4 40794674 40794954 -161533393 + AluSx SINE Alu 21 301 -11 1316 209 63 41 chr4 40795021 40795560 -161532787 + L1MC/D LINE L1 4898 5448 -872 2072 106 0 3 chr4 40795560 40795853 -161532494 + AluSq SINE Alu 2 293 -20 1316 209 63 41 chr4 40795853 40795986 -161532361 + L1MC/D LINE L1 5448 5577 -743 2590 127 52 15 chr4 40795986 40796423 -161531924 + MER34C LTR ERV1 2 455 -130 1590 88 0 9 chr4 40796423 40796613 -161531734 - AluSx SINE Alu 0 323 134 2044 82 3 60 chr4 40796613 40796949 -161531398 - AluSp SINE Alu 0 313 1 1590 88 0 9 chr4 40796949 40797012 -161531335 - AluSx SINE Alu -189 134 72 549 104 13 0 chr4 40797113 40797190 -161531157 - AluSx SINE Alu -233 79 2 1457 109 14 0 chr4 40797207 40797418 -161530929 - MER31A LTR ERV1 -9 476 263 2296 94 0 0 chr4 40797433 40797742 -161530605 + AluSg SINE Alu 2 310 0 1591 168 14 14 chr4 40797834 40798131 -161530216 + AluJo SINE Alu 1 297 -15 755 221 20 0 chr4 40798357 40798506 -161529841 + LTR51 LTR ERV1 236 387 -284 2605 201 48 70 chr4 40798510 40799242 -161529105 - MER50 LTR ERV1 -9 725 10 661 248 81 12 chr4 40799236 40799482 -161528865 + LTR51 LTR ERV1 380 842 -81 * 252 368 103 0 chr4 40800329 40800446 -161527901 - MIR SINE MIR -59 149 21 293 338 80 7 chr4 40801946 40802097 -161526250 + MLT1J2 LTR MaLR 263 424 -26 566 193 50 34 chr4 40802141 40802260 -161526087 - MLT1K LTR MaLR -89 499 379 438 240 120 8 chr4 40802474 40802599 -161525748 + MLT1D LTR MaLR 1 139 -366 392 258 106 0 chr4 40802732 40802864 -161525483 + MIR SINE MIR 78 223 -39 2209 120 0 0 chr4 40803030 40803355 -161524992 - L1PA14 LINE L1 0 6161 5837 1733 97 4 0 chr4 40803355 40803592 -161524755 + L1PA14 LINE L1 5575 5812 -349 196 288 51 0 chr4 40803592 40803651 -161524696 + MIR SINE MIR 123 184 -78 568 259 46 10 chr4 40803742 40803939 -161524408 + MER20 DNA MER1_type 2 205 -14 243 0 0 0 chr4 40804068 40804095 -161524252 + (TTTTTG)n Simple_repeat Simple_repeat 6 32 0 244 210 170 10 chr4 40804766 40804866 -161523481 - L2 LINE L2 -2 3311 3196 181 283 33 0 chr4 40804919 40804979 -161523368 + MIR SINE MIR 84 145 -63 696 130 0 0 chr4 40807524 40807639 -161520708 + (TG)n Simple_repeat Simple_repeat 1 115 0 2150 99 0 10 chr4 40808401 40808705 -161519642 + AluSq SINE Alu 1 301 -12 239 273 15 0 chr4 40808887 40808953 -161519394 + L2 LINE L2 3240 3306 -7 940 220 75 83 chr4 40810288 40810757 -161517590 + MLT1C LTR MaLR 3 467 0 874 227 85 7 chr4 40813997 40814443 -161513904 + MLT1D LTR MaLR 3 505 0 199 286 114 14 chr4 40814469 40814539 -161513808 + MIR SINE MIR 108 184 -78 210 241 17 0 chr4 40814769 40814827 -161513520 + CT-rich Low_complexity Low_complexity 3 61 0 190 93 23 23 chr4 40815779 40815822 -161512525 + (TG)n Simple_repeat Simple_repeat 2 44 0 442 188 40 40 chr4 40816016 40816192 -161512155 + (TG)n Simple_repeat Simple_repeat 1 176 0 357 129 51 45 chr4 40816230 40816408 -161511939 + (TG)n Simple_repeat Simple_repeat 1 179 0 357 239 246 0 chr4 40816652 40816782 -161511565 - MER5A DNA MER1_type -16 173 12 2120 104 7 3 chr4 40817622 40817930 -161510417 - AluSg1 SINE Alu 0 309 1 229 173 154 58 chr4 40818283 40818387 -161509960 - MER41C LTR ERV1 -39 515 402 397 242 11 0 chr4 40818745 40818836 -161509511 - LTR43 LTR ERV1 -324 278 187 711 185 33 29 chr4 40820301 40820463 -161507884 - MER45A DNA AcHobo 0 178 12 1780 199 20 34 chr4 40821567 40821622 -161506725 - MLT1B LTR MaLR 0 396 342 1880 153 9 24 chr4 40821622 40821961 -161506386 - MER1B DNA MER1_type 0 337 4 1780 199 20 34 chr4 40821961 40822299 -161506048 - MLT1B LTR MaLR -54 342 2 1745 194 33 22 chr4 40822444 40822809 -161505538 + L1MC3 LINE L1 7077 7445 -340 290 164 55 0 chr4 40822832 40822887 -161505460 + MER66B LTR ERV1 295 352 -134 336 291 126 46 chr4 40822919 40823070 -161505277 + HAL1 LINE L1 1530 1692 -815 533 302 99 18 chr4 40823532 40823754 -161504593 + MIR SINE MIR 10 249 -13 281 80 0 100 chr4 40824332 40824382 -161503965 + Alu SINE Alu 2 46 -256 234 0 0 0 chr4 40824397 40824423 -161503924 + (CA)n Simple_repeat Simple_repeat 2 27 0 591 147 83 9 chr4 40824499 40824608 -161503739 + AluJb SINE Alu 180 296 -16 252 243 14 27 chr4 40825331 40825405 -161502942 + GA-rich Low_complexity Low_complexity 1 73 0 232 302 0 0 chr4 40825524 40825587 -161502760 + (CA)n Simple_repeat Simple_repeat 2 64 0 322 297 123 81 chr4 40825736 40825969 -161502378 + L1MDb LINE L1 911 1133 -5296 2208 93 0 37 chr4 40825969 40826292 -161502055 + AluSq SINE Alu 1 311 -2 1343 189 39 23 chr4 40826296 40826603 -161501744 + AluJb SINE Alu 1 312 0 322 297 123 81 chr4 40826603 40826941 -161501406 + L1MDb LINE L1 1135 1440 -4989 429 277 155 18 chr4 40826947 40827225 -161501122 + HAL1 LINE L1 1427 1742 -765 306 289 183 35 chr4 40827583 40827780 -161500567 + HAL1b LINE L1 705 930 -418 399 315 107 27 chr4 40828242 40828652 -161499695 + L1ME4a LINE L1 5585 6027 -94 1095 133 0 28 chr4 40829929 40830110 -161498237 + FRAM SINE Alu 1 176 0 424 242 194 0 chr4 40830584 40830708 -161497639 - MIR SINE MIR -79 183 36 1889 227 130 11 chr4 40831866 40832413 -161495934 + MER90 LTR ERV1 3 614 0 664 219 31 0 chr4 40832806 40832934 -161495413 - AluJb SINE Alu -19 293 162 198 0 0 0 chr4 40832935 40832957 -161495390 + (A)n Simple_repeat Simple_repeat 1 22 0 1435 195 26 7 chr4 40833106 40833408 -161494939 + AluJb SINE Alu 1 308 -4 2053 125 0 7 chr4 40833430 40833735 -161494612 + AluSx SINE Alu 1 303 -9 817 94 0 0 chr4 40833892 40833998 -161494349 - AluY SINE Alu -16 295 190 1546 138 0 19 chr4 40834096 40834357 -161493990 - AluJb SINE Alu -32 280 25 2155 98 16 0 chr4 40834811 40835164 -161493183 - AluSx SINE Alu 0 358 1 580 306 83 25 chr4 40835724 40836156 -161492191 - L1ME1 LINE L1 -5 6161 5705 281 266 87 82 chr4 40836164 40836348 -161491999 - L2 LINE L2 -1512 1802 1618 1667 119 76 4 chr4 40836406 40836683 -161491664 + AluSx SINE Alu 1 297 -15 290 146 0 0 chr4 40836714 40836762 -161491585 - MLT2C1 LTR ERVL 0 397 350 185 230 7 37 chr4 40836797 40836932 -161491415 + (TA)n Simple_repeat Simple_repeat 1 131 0 231 250 16 0 chr4 40836999 40837063 -161491284 + (TA)n Simple_repeat Simple_repeat 2 66 0 316 244 23 43 chr4 40837068 40837178 -161491169 - L1MCa LINE L1 -1337 6985 1995 1940 99 23 10 chr4 40837356 40837659 -161490688 + AluSq SINE Alu 1 307 -6 1793 92 88 7 chr4 40837718 40837990 -161490357 + AluSc SINE Alu 1 294 -15 778 199 0 57 chr4 40837999 40838175 -161490172 + FRAM SINE Alu 1 165 -11 658 212 179 5 chr4 40838247 40838431 -161489916 + MER20 DNA MER1_type 1 216 -3 2157 90 7 0 chr4 40838438 40838727 -161489620 + AluSq SINE Alu 2 292 -21 612 252 30 70 chr4 40838745 40838943 -161489404 + L1ME3A LINE L1 5652 5841 -325 1914 139 0 20 chr4 40838943 40839245 -161489102 + AluSx SINE Alu 3 298 -14 612 252 30 70 chr4 40839245 40839276 -161489071 + L1ME3A LINE L1 5841 5872 -294 1815 145 32 0 chr4 40839592 40839874 -161488473 - AluSx SINE Alu -20 292 2 1677 118 0 0 chr4 40840070 40840299 -161488048 + AluSx SINE Alu 1 229 -83 226 48 0 48 chr4 40840311 40840353 -161487994 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 2071 128 3 0 chr4 40840471 40840768 -161487579 - AluSx SINE Alu -14 298 1 1695 150 7 20 chr4 40840963 40841263 -161487084 + AluJo SINE Alu 12 307 -5 2134 107 0 16 chr4 40841263 40841579 -161486768 + AluSx SINE Alu 1 312 0 2206 89 3 0 chr4 40841598 40841890 -161486457 + AluSp SINE Alu 2 294 -19 1658 74 5 0 chr4 40841891 40842106 -161486241 + AluSg/x SINE Alu 83 298 -14 2055 122 3 0 chr4 40842647 40842951 -161485396 + AluSx SINE Alu 1 305 -7 918 125 0 22 chr4 40843027 40843163 -161485184 + FLAM_C SINE Alu 1 133 0 2353 88 0 0 chr4 40843185 40843491 -161484856 + AluSg SINE Alu 1 306 -4 1994 136 7 0 chr4 40844049 40844359 -161483988 - AluSq SINE Alu 0 313 2 373 272 41 47 chr4 40844640 40844845 -161483502 - MIR SINE MIR -25 237 30 198 167 0 0 chr4 40844893 40844929 -161483418 + A-rich Low_complexity Low_complexity 2 37 0 2279 100 3 0 chr4 40845186 40845495 -161482852 + AluSq SINE Alu 1 310 -3 716 221 117 29 chr4 40845573 40845813 -161482534 + L1MC4 LINE L1 7602 7862 -180 22 35 0 0 chr4 40846331 40846360 -161481987 + AT_rich Low_complexity Low_complexity 1 29 0 1727 121 6 82 chr4 40846501 40846816 -161481531 + AluSx SINE Alu 1 291 -21 2237 86 0 10 chr4 40846819 40847133 -161481214 + AluY SINE Alu 1 311 0 640 150 154 91 chr4 40847914 40848134 -161480213 + MER46A DNA MER2_type 2 235 -1 23 33 0 0 chr4 40848138 40848168 -161480179 + AT_rich Low_complexity Low_complexity 1 30 0 2018 121 0 16 chr4 40848172 40848477 -161479870 + AluSx SINE Alu 2 301 -11 394 161 23 23 chr4 40848500 40848587 -161479760 - MER112 DNA MER1_type -151 109 23 359 294 99 60 chr4 40848622 40848986 -161479361 - L2 LINE L2 -2 3311 2934 202 299 81 58 chr4 40849167 40849475 -161478872 - L2 LINE L2 -710 2604 2290 300 200 67 40 chr4 40849687 40849762 -161478585 + L2 LINE L2 3204 3280 -33 2144 91 3 7 chr4 40850201 40850498 -161477849 + AluSp SINE Alu 1 296 -17 388 233 70 39 chr4 40850603 40850732 -161477615 - L1ME4a LINE L1 -2 6119 5987 238 234 90 112 chr4 40850853 40851041 -161477306 - L2 LINE L2 -221 3051 2868 2173 101 3 7 chr4 40851300 40851597 -161476750 + AluSq SINE Alu 1 296 -17 205 195 52 0 chr4 40851607 40851684 -161476663 + (TATAA)n Simple_repeat Simple_repeat 3 83 0 773 171 39 0 chr4 40851789 40851918 -161476429 + AluJo SINE Alu 2 135 -177 1752 64 0 0 chr4 40851942 40852161 -161476186 + L1PA6 LINE L1 5936 6154 0 1984 73 52 11 chr4 40852162 40852448 -161475899 + AluSg SINE Alu 1 298 -12 1201 209 60 11 chr4 40852640 40852923 -161475424 + AluJo SINE Alu 1 297 -15 2008 98 13 36 chr4 40852951 40853257 -161475090 + AluSx SINE Alu 1 299 -13 2238 73 0 7 chr4 40853388 40853717 -161474630 + AluY SINE Alu 1 327 0 180 0 0 0 chr4 40853794 40853814 -161474533 + (TA)n Simple_repeat Simple_repeat 1 20 0 2137 158 47 27 chr4 40853814 40854263 -161474084 + L1MB8 LINE L1 5649 6106 -72 1739 122 44 0 chr4 40854264 40854593 -161473754 - AluSx SINE Alu 0 341 1 2216 73 0 0 chr4 40857542 40857830 -161470517 - AluSx SINE Alu -24 288 1 591 236 52 17 chr4 40857952 40858126 -161470221 - MIR SINE MIR -6 256 77 1672 147 6 58 chr4 40858689 40858881 -161469466 - AluSx SINE Alu -2 310 140 2165 102 0 0 chr4 40858881 40859175 -161469172 - AluY SINE Alu -17 294 1 1672 147 6 58 chr4 40859175 40859309 -161469038 - AluSx SINE Alu -172 140 1 1820 145 7 7 chr4 40859361 40859671 -161468676 - AluJb SINE Alu -2 310 1 2110 132 0 0 chr4 40859752 40860063 -161468284 + AluSq SINE Alu 1 311 -2 2362 77 0 7 chr4 40860089 40860399 -161467948 + AluY SINE Alu 1 308 -3 865 195 51 96 chr4 40860475 40860692 -161467655 + MSTD LTR MaLR 87 340 -56 862 133 0 22 chr4 40860692 40860827 -161467520 + FLAM_C SINE Alu 2 133 0 865 195 51 96 chr4 40860827 40860882 -161467465 + MSTD LTR MaLR 340 396 0 411 317 8 16 chr4 40861531 40861562 -161466785 + L1MC4 LINE L1 6582 6612 -1430 1950 130 23 10 chr4 40861562 40861869 -161466478 + AluSq SINE Alu 1 311 -2 411 317 8 16 chr4 40861869 40861960 -161466387 + L1MC4 LINE L1 6612 6703 -1339 366 223 56 80 chr4 40861898 40862052 -161466295 - L1MC4 LINE L1 -1339 6983 1930 * 1848 151 0 0 chr4 40862269 40862593 -161465754 + AluJb SINE Alu 1 324 0 662 192 8 0 chr4 40862638 40862758 -161465589 + FRAM SINE Alu 43 163 -13 21 0 0 0 chr4 40862846 40862867 -161465480 + AT_rich Low_complexity Low_complexity 1 21 0 2844 6 0 0 chr4 40863499 40863815 -161464532 + AluYb8 SINE Alu 1 316 -2 2046 100 0 11 chr4 40864106 40864411 -161463936 - AluSq SINE Alu 0 308 7 331 276 158 8 chr4 40864670 40864824 -161463523 - MIR SINE MIR -28 180 1 420 252 98 0 chr4 40865128 40865271 -161463076 + L1ME3 LINE L1 6005 6161 -1 480 298 88 80 chr4 40865479 40865630 -161462717 - L3 LINE CR1 -42 1535 1387 1510 187 0 14 chr4 40865630 40865913 -161462434 - AluJo SINE Alu -33 279 1 480 298 88 80 chr4 40865913 40866161 -161462186 - L3 LINE CR1 -190 1387 1133 349 323 209 18 chr4 40866245 40866734 -161461613 - L3 LINE CR1 -652 925 344 2004 138 0 0 chr4 40867242 40867540 -161460807 + AluSx SINE Alu 1 298 -14 1803 142 24 7 chr4 40867990 40868285 -161460062 + AluSx SINE Alu 1 300 -12 581 279 108 21 chr4 40869507 40869747 -161458600 + MIR SINE MIR 2 262 0 28 48 0 0 chr4 40870250 40870292 -161458055 + AT_rich Low_complexity Low_complexity 1 42 0 2055 112 0 28 chr4 40870599 40870920 -161457427 + AluSx SINE Alu 1 312 0 775 118 15 59 chr4 40870956 40871092 -161457255 + AluJo SINE Alu 7 136 -176 534 314 162 23 chr4 40871137 40871440 -161456907 + L3 LINE CR1 1210 1554 -23 2230 86 0 0 chr4 40872399 40872690 -161455657 - AluY SINE Alu -20 291 1 21 0 0 0 chr4 40872703 40872724 -161455623 + AT_rich Low_complexity Low_complexity 1 21 0 376 300 100 6 chr4 40872833 40872993 -161455354 + MIR3 SINE MIR 31 205 -3 222 37 0 0 chr4 40874636 40874663 -161453684 + (CA)n Simple_repeat Simple_repeat 2 28 0 201 39 0 0 chr4 40874837 40874863 -161453484 + (TTA)n Simple_repeat Simple_repeat 2 27 0 582 319 122 28 chr4 40875998 40876673 -161451674 - L2 LINE L2 -13 3300 2555 4445 126 3 39 chr4 40877002 40877033 -161451314 + L1PA16 LINE L1 5456 5487 -679 1906 164 0 3 chr4 40877033 40877345 -161451002 + AluJo SINE Alu 1 311 -1 4445 126 3 39 chr4 40877345 40878051 -161450296 + L1PA16 LINE L1 5487 6166 0 905 209 69 5 chr4 40878052 40878261 -161450086 + MIR SINE MIR 31 246 -16 391 271 18 42 chr4 40878607 40878773 -161449574 + MER103 DNA DNA 3 164 -2 895 156 0 0 chr4 40879105 40879246 -161449101 - AluSg/x SINE Alu -43 267 127 303 223 9 0 chr4 40879279 40879341 -161449006 - AluJ/monomer SINE Alu -251 52 2 402 74 0 0 chr4 40880301 40880355 -161447992 + (CA)n Simple_repeat Simple_repeat 1 54 0 1599 235 90 11 chr4 40880907 40881353 -161446994 + MER41E LTR ERV1 22 502 -10 1867 109 0 0 chr4 40881891 40882178 -161446169 + AluSx SINE Alu 36 312 0 2775 164 82 25 chr4 40883816 40884340 -161444007 - MLT2B3 LTR ERVL 0 554 1 5261 157 55 18 chr4 40884340 40885293 -161443054 - ERVL-B3 LTR ERVL -7 5757 4770 285 280 0 65 chr4 40885293 40885386 -161442961 + L2 LINE L2 3186 3272 0 2478 102 20 28 chr4 40885454 40885645 -161442702 + L1PA13 LINE L1 5773 5964 -199 1856 103 11 0 chr4 40885645 40885907 -161442440 + AluSx SINE Alu 1 265 -47 2478 102 20 28 chr4 40885907 40886109 -161442238 + L1PA13 LINE L1 5964 6163 0 835 239 125 18 chr4 40888063 40888335 -161440012 - LTR16C LTR ERVL 0 491 191 752 276 5 10 chr4 40888475 40888674 -161439673 - MIR SINE MIR -18 244 47 209 300 50 38 chr4 40888838 40888918 -161439429 + MER5A DNA MER1_type 91 171 -18 285 261 201 47 chr4 40889938 40890172 -161438175 + L2 LINE L2 3043 3312 -1 657 253 93 6 chr4 40890531 40890713 -161437634 + MIR SINE MIR 65 262 0 504 227 74 45 chr4 40890845 40891029 -161437318 + MER113 DNA MER1_type? 6 183 -338 2303 171 55 0 chr4 40891029 40891433 -161436914 - MSTB LTR MaLR 0 426 1 504 227 74 45 chr4 40891433 40891639 -161436708 + MER113 DNA MER1_type? 183 467 -54 276 259 30 52 chr4 40891703 40891838 -161436509 + MIR3 SINE MIR 2 133 -75 182 278 33 78 chr4 40891940 40892030 -161436317 + MER5A DNA MER1_type 3 88 -101 552 245 92 10 chr4 40892374 40892570 -161435777 - L1ME3 LINE L1 0 6162 5951 416 233 19 19 chr4 40893007 40893110 -161435237 + MIR3 SINE MIR 85 187 -21 244 228 30 5 chr4 40893224 40893309 -161435038 + MIR SINE MIR 8 147 -61 270 192 33 15 chr4 40893783 40893857 -161434490 - MIR SINE MIR -63 145 76 415 207 59 112 chr4 40894837 40895006 -161433341 + MIR SINE MIR 29 188 -74 218 254 28 28 chr4 40896538 40896609 -161431738 + MIR SINE MIR 49 119 -143 287 329 52 7 chr4 40896789 40896944 -161431403 + (CATG)n Simple_repeat Simple_repeat 1 162 0 237 357 7 19 chr4 40896868 40897022 -161431325 + (TG)n Simple_repeat Simple_repeat 1 152 0 * 326 270 82 19 chr4 40897372 40897531 -161430816 - MIR SINE MIR -48 214 46 480 274 189 37 chr4 40898015 40898343 -161430004 + L2 LINE L2 2935 3312 -1 2188 110 0 0 chr4 40898594 40898904 -161429443 - AluSx SINE Alu -2 310 1 392 324 0 0 chr4 40898977 40899088 -161429259 + MIR3 SINE MIR 57 167 -41 1511 231 80 11 chr4 40899091 40899454 -161428893 + MLT1F LTR MaLR 1 388 -154 1662 143 3 64 chr4 40899513 40899827 -161428520 + AluJb SINE Alu 1 295 -17 521 321 108 22 chr4 40899835 40900308 -161428039 + L2 LINE L2 2703 3236 -36 194 232 275 0 chr4 40900501 40900570 -161427777 - MIR3 SINE MIR -30 178 91 298 322 113 0 chr4 40901234 40901419 -161426928 + MIR SINE MIR 16 223 -39 180 0 0 0 chr4 40901445 40901465 -161426882 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 395 255 43 0 chr4 40901465 40901559 -161426788 - L2 LINE L2 -13 3300 3203 706 282 102 42 chr4 40901619 40901952 -161426395 - MLT1I LTR MaLR -54 355 3 272 283 283 4 chr4 40901967 40902225 -161426122 - L2 LINE L2 -177 3136 2807 666 267 106 0 chr4 40902338 40902518 -161425829 + MIR SINE MIR 64 262 0 368 330 128 11 chr4 40903349 40903537 -161424810 - MIR SINE MIR -35 227 18 349 262 25 57 chr4 40903870 40903992 -161424355 + MIR3 SINE MIR 43 160 -48 318 257 208 7 chr4 40905712 40905856 -161422491 + MIR SINE MIR 20 192 -70 203 316 13 66 chr4 40906582 40906658 -161421689 + MIR3 SINE MIR 90 161 -47 475 266 188 33 chr4 40906868 40907139 -161421208 - L2 LINE L2 0 3313 3001 316 323 106 52 chr4 40907175 40907581 -161420766 - L2 LINE L2 -420 2894 2467 1594 178 0 34 chr4 40907620 40907941 -161420406 - AluJb SINE Alu -2 310 1 256 255 123 19 chr4 40908132 40908238 -161420109 - MLT1K LTR MaLR -8 580 464 262 243 107 29 chr4 40908622 40908725 -161419622 - MLT1K LTR MaLR -290 298 188 237 131 66 16 chr4 40909224 40909285 -161419062 + (GGGTG)n Simple_repeat Simple_repeat 3 66 0 295 274 0 48 chr4 40909446 40909530 -161418817 + MIR SINE MIR 69 148 -60 883 145 8 0 chr4 40909534 40909665 -161418682 + FLAM_C SINE Alu 3 132 -11 2056 142 6 13 chr4 40909769 40910080 -161418267 + AluJb SINE Alu 1 309 -3 475 265 37 56 chr4 40910299 40910388 -161417959 - MIR SINE MIR -15 247 158 1755 205 137 14 chr4 40910388 40910876 -161417471 - MLT1H LTR MaLR 0 549 2 475 265 37 56 chr4 40910876 40911001 -161417346 - MIR SINE MIR -104 158 37 269 231 154 11 chr4 40912846 40912937 -161415410 - L2 LINE L2 0 3313 3210 1765 138 37 0 chr4 40913383 40913724 -161414623 + AluSg SINE Alu 1 351 0 289 190 76 13 chr4 40913730 40913809 -161414538 - MLT1K LTR MaLR -331 257 174 328 265 41 0 chr4 40913922 40914020 -161414327 + MIR SINE MIR 117 218 -44 389 242 68 75 chr4 40914320 40914481 -161413866 + MIR SINE MIR 20 179 -83 232 248 10 59 chr4 40914591 40914692 -161413655 - L2 LINE L2 -50 3263 3168 210 241 12 12 chr4 40915024 40915107 -161413240 + (TG)n Simple_repeat Simple_repeat 2 84 0 256 329 7 7 chr4 40915192 40915335 -161413012 + (TG)n Simple_repeat Simple_repeat 2 144 0 414 0 0 0 chr4 40915418 40915464 -161412883 + (CA)n Simple_repeat Simple_repeat 2 47 0 353 22 22 0 chr4 40916775 40916821 -161411526 + (TC)n Simple_repeat Simple_repeat 2 48 0 1307 255 50 35 chr4 40917503 40918179 -161410168 - L2 LINE L2 -6 3307 2626 295 184 0 122 chr4 40918440 40918538 -161409809 + MER58B DNA MER1_type 251 336 -5 515 81 11 0 chr4 40918598 40918685 -161409662 + L1MA7 LINE L1 6204 6291 0 2105 130 7 0 chr4 40918791 40919098 -161409249 - AluSx SINE Alu -3 309 1 854 256 82 0 chr4 40919120 40919327 -161409020 - MER58A DNA MER1_type 0 224 1 266 291 107 15 chr4 40919359 40919505 -161408842 + MIR SINE MIR 29 196 -66 526 250 17 23 chr4 40920101 40920273 -161408074 + MER104 DNA Tc2 10 180 0 467 287 59 51 chr4 40920330 40920584 -161407763 - MIR SINE MIR -2 260 5 996 198 38 9 chr4 40920695 40920907 -161407440 - MER20 DNA MER1_type 0 219 2 317 267 115 0 chr4 40921974 40922139 -161406208 + L1P5 LINE L1 5254 5437 -714 249 238 99 16 chr4 40922163 40922327 -161406020 + L1ME LINE L1 5567 5751 -411 2307 116 0 0 chr4 40923011 40923322 -161405025 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr4 40924329 40924361 -161403986 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr4 40924491 40924513 -161403834 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr4 40924544 40924585 -161403762 + AT_rich Low_complexity Low_complexity 1 41 0 215 229 0 21 chr4 40925408 40925456 -161402891 + MER5A DNA MER1_type 1 47 -142 461 253 73 17 chr4 40927911 40928089 -161400258 + L2 LINE L2 1773 1960 -1354 1874 180 35 31 chr4 40928089 40928636 -161399711 - MLT2A2 LTR ERVL -2 552 1 1462 342 119 19 chr4 40928643 40928939 -161399408 + L2 LINE L2 1961 2226 -1087 1840 204 23 21 chr4 40928939 40929371 -161398976 + Tigger2a DNA MER2_type 1 433 -1 1462 342 119 19 chr4 40929371 40930257 -161398090 + L2 LINE L2 2226 3269 -44 281 406 0 0 chr4 40930315 40930438 -161397909 + L2 LINE L2 3150 3272 0 21 0 0 0 chr4 40930537 40930558 -161397789 + AT_rich Low_complexity Low_complexity 1 21 0 248 219 0 14 chr4 40930619 40930692 -161397655 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 566 230 18 0 chr4 40930867 40930980 -161397367 - FLAM_A SINE Alu -16 126 12 1993 145 3 3 chr4 40931685 40931981 -161396366 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr4 40932079 40932100 -161396247 + AT_rich Low_complexity Low_complexity 1 21 0 597 287 36 10 chr4 40934449 40934644 -161393703 + MLT1E LTR MaLR 41 240 -353 290 336 90 36 chr4 40935007 40935284 -161393063 + L2 LINE L2 3021 3312 -1 214 167 33 0 chr4 40935608 40935668 -161392679 + (TA)n Simple_repeat Simple_repeat 1 62 0 354 23 0 0 chr4 40936995 40937038 -161391309 + (TG)n Simple_repeat Simple_repeat 2 44 0 1179 184 19 99 chr4 40937069 40937434 -161390913 - MLT2C1 LTR ERVL -61 336 1 257 75 25 0 chr4 40937450 40937490 -161390857 + (TA)n Simple_repeat Simple_repeat 2 42 0 180 0 0 0 chr4 40937768 40937788 -161390559 + (TG)n Simple_repeat Simple_repeat 2 21 0 798 113 13 53 chr4 40937803 40937953 -161390394 - L1MB3 LINE L1 0 6183 6040 1487 153 0 66 chr4 40937959 40938247 -161390100 - AluJo SINE Alu -4 308 40 219 302 57 66 chr4 40938870 40938976 -161389371 - L2 LINE L2 -3 3310 3206 1568 148 11 4 chr4 40939104 40939368 -161388979 + L1PB3 LINE L1 5889 6154 0 1773 160 24 17 chr4 40939397 40939690 -161388657 + AluJb SINE Alu 1 295 -17 2881 151 12 2 chr4 40939700 40940209 -161388138 + L1MC1 LINE L1 5818 6331 -2 460 238 167 62 chr4 40941184 40941525 -161386822 + L1ME4a LINE L1 5743 6119 -2 2291 108 3 0 chr4 40942600 40942906 -161385441 + AluSx SINE Alu 1 307 -5 2349 93 3 6 chr4 40942947 40943258 -161385089 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr4 40943564 40943586 -161384761 + AT_rich Low_complexity Low_complexity 1 22 0 1950 110 0 0 chr4 40943587 40943841 -161384506 - AluSx SINE Alu -18 294 41 326 266 43 11 chr4 40944637 40944731 -161383616 - MER91B DNA MER1_type -2 188 92 361 293 17 26 chr4 40944752 40944868 -161383479 - MER91B DNA MER1_type -61 129 15 2038 121 16 16 chr4 40944993 40945298 -161383049 + AluSx SINE Alu 1 305 -7 1110 167 28 9 chr4 40945321 40945536 -161382811 + MER20 DNA MER1_type 1 219 0 404 275 46 9 chr4 40945731 40945840 -161382507 - MER81 DNA DNA 0 114 2 1806 167 3 43 chr4 40946372 40946695 -161381652 - AluJb SINE Alu -2 310 1 180 323 32 16 chr4 40948684 40948746 -161379601 + MIR SINE MIR 85 147 -61 2108 60 0 0 chr4 40948832 40949082 -161379265 + AluY SINE Alu 62 311 0 770 260 22 6 chr4 40949761 40949942 -161378405 - MIR SINE MIR -77 185 2 2384 95 0 0 chr4 40950344 40950648 -161377699 + AluSq SINE Alu 1 304 -9 479 246 232 0 chr4 40950771 40950909 -161377438 - MER5A DNA MER1_type -5 184 15 2125 86 54 0 chr4 40951401 40951681 -161376666 - AluSp SINE Alu -18 295 1 334 292 119 38 chr4 40951682 40951867 -161376480 + HAL1 LINE L1 813 1012 -1495 710 174 0 0 chr4 40951916 40952025 -161376322 + FLAM_C SINE Alu 1 109 -34 381 262 90 0 chr4 40952055 40952200 -161376147 + HAL1 LINE L1 1624 1781 -726 481 244 54 18 chr4 40952389 40952557 -161375790 + MER104 DNA MER2_type 4 177 -3 364 169 39 0 chr4 40952585 40952662 -161375685 - MIR SINE MIR -15 247 168 296 242 32 0 chr4 40953058 40953153 -161375194 + HAL1 LINE L1 2239 2336 -171 2267 101 7 13 chr4 40953546 40953853 -161374494 + AluSx SINE Alu 1 305 -7 477 295 23 0 chr4 40954951 40955080 -161373267 + L2 LINE L2 3182 3313 0 226 353 57 71 chr4 40955578 40955861 -161372486 + L2 LINE L2 2989 3267 -5 659 298 69 5 chr4 40956657 40956875 -161371472 - MIR SINE MIR -24 238 7 792 116 23 23 chr4 40956919 40957048 -161371299 - FRAM SINE Alu -19 157 29 550 301 77 19 chr4 40957366 40957731 -161370616 - L1ME LINE L1 -361 5801 5416 579 254 11 38 chr4 40957742 40957927 -161370420 - LTR67 LTR ERVL -368 189 10 270 219 44 37 chr4 40957955 40958048 -161370299 - MER5A DNA MER1_type 0 189 87 203 228 70 18 chr4 40958065 40958122 -161370225 - L2 LINE L2 -4 3268 3209 1578 64 14 5 chr4 40958605 40958824 -161369523 - L1MA2 LINE L1 0 6304 6084 343 197 0 42 chr4 40959503 40959574 -161368773 - MER5A DNA MER1_type -110 79 12 799 299 33 5 chr4 40959694 40959905 -161368442 - MIR SINE MIR -12 250 34 21 0 0 0 chr4 40959926 40959947 -161368400 + AT_rich Low_complexity Low_complexity 1 21 0 2259 114 0 0 chr4 40960183 40960489 -161367858 - AluSx SINE Alu -4 308 3 248 221 13 0 chr4 40960543 40960620 -161367727 + (TA)n Simple_repeat Simple_repeat 2 79 0 486 312 78 55 chr4 40961348 40961835 -161366512 + L1M4 LINE L1 4736 5233 -913 28 29 0 0 chr4 40961946 40961981 -161366366 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr4 40962486 40962511 -161365836 + AT_rich Low_complexity Low_complexity 1 25 0 4458 180 39 5 chr4 40963668 40964660 -161363687 + L1MB7 LINE L1 5155 6184 0 191 36 36 0 chr4 40968648 40968676 -161359671 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 215 243 126 78 chr4 40968883 40968986 -161359361 + MIR3 SINE MIR 14 121 -87 269 36 54 36 chr4 40969135 40969191 -161359156 + (TTTTTA)n Simple_repeat Simple_repeat 4 60 0 667 146 49 24 chr4 40969200 40969323 -161359024 - FLAM_C SINE Alu -3 130 5 342 230 98 46 chr4 40969365 40969539 -161358808 + MLT1J LTR MaLR 1 183 -328 616 116 0 0 chr4 40969543 40969638 -161358709 + Ricksha DNA DNA 9 103 -1151 8700 140 16 8 chr4 40969650 40971072 -161357275 + Ricksha DNA DNA 240 1673 -1573 2096 139 3 10 chr4 40971072 40971375 -161356972 + AluSq SINE Alu 1 301 -12 7200 133 73 20 chr4 40971375 40972082 -161356265 + Ricksha DNA DNA 1762 2430 -827 1815 154 13 29 chr4 40972082 40972388 -161355959 - AluJb SINE Alu -11 301 1 7200 133 73 20 chr4 40972388 40973004 -161355343 + Ricksha DNA DNA 2430 3145 -112 2364 94 0 7 chr4 40973004 40973312 -161355035 - AluY SINE Alu -5 306 1 7200 133 73 20 chr4 40973312 40973421 -161354926 + Ricksha DNA DNA 3145 3247 -10 540 266 51 62 chr4 40973492 40973748 -161354599 + MLT1J LTR MaLR 231 483 -28 23 33 0 0 chr4 40973992 40974022 -161354325 + AT_rich Low_complexity Low_complexity 1 30 0 712 163 114 0 chr4 40974374 40974497 -161353850 - FRAM SINE Alu -23 153 17 43 20 0 0 chr4 40974711 40974761 -161353586 + AT_rich Low_complexity Low_complexity 1 50 0 2371 68 0 0 chr4 40974786 40975089 -161353258 + AluY SINE Alu 1 303 0 886 167 0 0 chr4 40975585 40975723 -161352624 + FLAM_C SINE Alu 1 138 -5 350 270 235 20 chr4 40975948 40976144 -161352203 - MIR SINE MIR -6 256 19 2252 256 57 25 chr4 40976639 40977709 -161350638 + L1M4 LINE L1 3425 4600 -1546 806 121 0 26 chr4 40977772 40977888 -161350459 + AluJb SINE Alu 14 126 -186 453 76 0 0 chr4 40977902 40977968 -161350379 + (GA)n Simple_repeat Simple_repeat 2 67 0 858 161 0 0 chr4 40978033 40978163 -161350184 + FLAM_C SINE Alu 11 140 -3 1010 244 44 4 chr4 40978552 40978781 -161349566 + MIR SINE MIR 6 243 -19 2077 117 4 0 chr4 40979106 40979416 -161348931 - AluSq SINE Alu 0 311 1 197 321 24 48 chr4 40979493 40979577 -161348770 - L2 LINE L2 -54 3218 3137 2495 64 0 0 chr4 40979635 40979932 -161348415 + AluY SINE Alu 1 297 -14 299 301 46 105 chr4 40979992 40980145 -161348202 - L2 LINE L2 -219 3053 2910 28 29 0 0 chr4 40980393 40980428 -161347919 + AT_rich Low_complexity Low_complexity 1 35 0 1627 188 40 13 chr4 40980499 40980803 -161347544 + AluJo SINE Alu 1 312 0 516 165 0 0 chr4 40980833 40980918 -161347429 + FLAM SINE Alu 44 128 -15 23 0 0 0 chr4 40980985 40981008 -161347339 + AT_rich Low_complexity Low_complexity 1 23 0 582 236 138 0 chr4 40981424 40981627 -161346720 + L2 LINE L2 1859 2089 -1225 296 232 0 0 chr4 40981756 40981825 -161346522 + L2 LINE L2 2403 2471 -843 336 289 70 14 chr4 40982600 40982742 -161345605 - L1M4 LINE L1 -1316 4830 4681 2402 55 3 3 chr4 40982754 40983044 -161345303 - AluSc SINE Alu -19 290 1 191 321 45 68 chr4 40983266 40983487 -161344860 + L2 LINE L2 2050 2265 -1049 298 304 98 27 chr4 40983634 40983733 -161344614 + L2 LINE L2 3194 3303 -10 1326 191 125 4 chr4 40983733 40984005 -161344342 + AluJb SINE Alu 1 305 -7 298 304 98 27 chr4 40984005 40984017 -161344330 + L2 LINE L2 3303 3313 0 836 159 0 0 chr4 40984354 40984480 -161343867 + FLAM_C SINE Alu 1 126 -17 814 201 113 80 chr4 40984825 40984899 -161343448 + MSTC LTR MaLR 1 71 -357 2157 114 0 14 chr4 40984899 40985196 -161343151 - AluSq SINE Alu -20 293 1 814 201 113 80 chr4 40985196 40985535 -161342812 + MSTC LTR MaLR 71 428 0 194 274 20 0 chr4 40986133 40986184 -161342163 - MER5B DNA MER1_type 0 178 127 288 263 22 73 chr4 40986207 40986344 -161342003 - MER5B DNA MER1_type 0 178 49 443 261 102 97 chr4 40986386 40986485 -161341862 - L1ME LINE L1 -308 5813 5716 2330 70 0 14 chr4 40986485 40986771 -161341576 - AluSg SINE Alu -28 282 1 443 261 102 97 chr4 40986771 40987054 -161341293 - L1ME LINE L1 -405 5716 5429 219 230 253 23 chr4 40987077 40987164 -161341183 - L2 LINE L2 0 3313 3207 585 217 108 18 chr4 40987352 40987518 -161340829 - MIR SINE MIR -21 241 61 1455 170 75 21 chr4 40987518 40987800 -161340547 + AluJb SINE Alu 1 297 -15 185 91 0 30 chr4 40987962 40987995 -161340352 + (GGAAA)n Simple_repeat Simple_repeat 4 35 0 1632 168 39 19 chr4 40989607 40989971 -161338376 + L1MB3 LINE L1 5806 6176 -7 1966 182 141 61 chr4 40990044 40990604 -161337743 + MER77 LTR ERV1 1 605 0 367 350 169 20 chr4 40990975 40991145 -161337202 + L2 LINE L2 2824 2967 -305 1051 153 81 34 chr4 40991145 40991354 -161336993 - MER20 DNA MER1_type 0 219 1 367 350 169 20 chr4 40991354 40991574 -161336773 + L2 LINE L2 2967 3272 0 1675 177 3 21 chr4 40991977 40992304 -161336043 - MLT1B LTR MaLR -5 385 65 371 303 67 8 chr4 40992353 40992472 -161335875 - L2 LINE L2 0 3272 3147 4776 129 54 31 chr4 40992521 40992788 -161335559 - MER4D LTR ERV1 0 903 644 1602 152 69 10 chr4 40992788 40993078 -161335269 + AluJb SINE Alu 1 307 -5 4776 129 54 31 chr4 40993078 40993675 -161334672 - MER4D LTR ERV1 -259 644 19 2121 130 3 7 chr4 40993675 40993982 -161334365 - AluSx SINE Alu -6 306 1 847 117 88 0 chr4 40993983 40994120 -161334227 + AluSg/x SINE Alu 140 288 -24 247 331 55 55 chr4 40994184 40994329 -161334018 - L2 LINE L2 -182 3090 2946 325 177 9 43 chr4 40994425 40994541 -161333806 - MER41B LTR ERV1 -12 597 403 401 136 0 0 chr4 40994541 40994607 -161333740 + Alu SINE Alu 242 307 -5 2164 150 5 30 chr4 40994607 40995013 -161333334 - MER41B LTR ERV1 -127 508 113 207 69 0 0 chr4 40995230 40995259 -161333088 + (A)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr4 40996152 40996182 -161332165 + AT_rich Low_complexity Low_complexity 1 30 0 195 42 0 0 chr4 40996549 40996573 -161331774 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 392 358 68 27 chr4 40996578 40996726 -161331621 - L2 LINE L2 -15 3257 3104 263 243 43 0 chr4 40996755 40996825 -161331522 + MIR3 SINE MIR 120 192 -16 2076 97 4 4 chr4 40997233 40997512 -161330835 + AluSp SINE Alu 30 308 -5 234 0 0 0 chr4 40997824 40997850 -161330497 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2041 126 16 19 chr4 40999245 40999555 -161328792 - AluSx SINE Alu -3 309 1 22 35 0 0 chr4 40999707 40999736 -161328611 + AT_rich Low_complexity Low_complexity 1 29 0 249 239 159 34 chr4 40999862 41000038 -161328309 + L1M4 LINE L1 4080 4277 -1869 1611 184 16 32 chr4 41000057 41000372 -161327975 + AluJb SINE Alu 1 310 -2 28 29 0 0 chr4 41000481 41000516 -161327831 + AT_rich Low_complexity Low_complexity 1 35 0 252 216 32 56 chr4 41000576 41000701 -161327646 - L1MC4 LINE L1 -19 8023 7902 1922 133 4 4 chr4 41001086 41001365 -161326982 + AluSx SINE Alu 1 279 -33 3597 173 38 25 chr4 41001413 41002182 -161326165 - L1MB8 LINE L1 -59 6119 5341 505 167 21 0 chr4 41002194 41002290 -161326057 + MIR SINE MIR 164 261 -1 364 293 93 76 chr4 41002308 41002700 -161325647 - L1M4 LINE L1 -3546 2600 2197 1902 126 0 66 chr4 41002700 41003018 -161325329 - AluJb SINE Alu -5 307 11 364 293 93 76 chr4 41003018 41003086 -161325261 - L1M4 LINE L1 -3949 2197 2132 831 229 48 27 chr4 41003336 41003637 -161324710 - L1ME LINE L1 -574 5588 5257 1971 145 26 3 chr4 41003676 41003979 -161324368 + AluSx SINE Alu 1 310 -2 243 88 0 0 chr4 41003979 41004013 -161324334 + (GGGGA)n Simple_repeat Simple_repeat 4 37 0 261 265 81 42 chr4 41004013 41004273 -161324074 - L1ME LINE L1 -917 5229 4960 1080 128 12 18 chr4 41004273 41004437 -161323910 - FRAM SINE Alu -10 166 4 244 183 113 78 chr4 41004451 41004566 -161323781 - L1ME LINE L1 -1249 4897 4779 317 213 0 0 chr4 41004645 41004706 -161323641 + MER58 DNA MER1_type 2354 2414 -6 4908 140 34 12 chr4 41005201 41006106 -161322241 + L1MA8 LINE L1 5364 6288 -3 483 275 80 56 chr4 41006122 41006233 -161322114 + L1MC/D LINE L1 5173 5280 -1007 2280 108 3 3 chr4 41006233 41006540 -161321807 + AluSq SINE Alu 1 307 -6 483 275 80 56 chr4 41006540 41006779 -161321568 + L1MC/D LINE L1 5280 5539 -748 763 235 18 12 chr4 41006925 41007091 -161321256 - MIR SINE MIR -95 167 1 1773 124 55 68 chr4 41007158 41007466 -161320881 + THE1C LTR MaLR 1 305 -70 2190 77 6 49 chr4 41007466 41007791 -161320556 - AluY SINE Alu 0 311 1 1773 124 55 68 chr4 41007791 41007862 -161320485 + THE1C LTR MaLR 305 375 0 21 57 0 0 chr4 41008089 41008124 -161320223 + AT_rich Low_complexity Low_complexity 1 35 0 25 65 0 0 chr4 41008738 41008784 -161319563 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr4 41009528 41009549 -161318798 + AT_rich Low_complexity Low_complexity 1 21 0 2397 81 7 0 chr4 41009662 41009969 -161318378 - AluSp SINE Alu -3 310 2 3869 173 73 30 chr4 41010661 41010934 -161317413 + L1MC3 LINE L1 6817 7077 -708 2540 63 0 0 chr4 41010934 41011234 -161317113 + AluY SINE Alu 1 300 -11 3869 173 73 30 chr4 41011234 41011785 -161316562 + L1MC3 LINE L1 7077 7676 -109 402 125 28 28 chr4 41011785 41011853 -161316494 + L1MC2 LINE L1 6259 6330 -14 254 233 178 11 chr4 41011939 41012029 -161316318 + L2 LINE L2 3209 3313 0 185 397 0 0 chr4 41012177 41012255 -161316092 - L2 LINE L2 -7 3306 3229 2075 121 14 0 chr4 41012258 41012548 -161315799 + AluSx SINE Alu 1 294 -18 2079 137 0 13 chr4 41013113 41013426 -161314921 - AluJb SINE Alu -3 309 1 436 333 140 22 chr4 41013426 41013741 -161314606 + L2 LINE L2 2626 2977 -337 297 254 0 0 chr4 41013880 41013939 -161314408 + MER82 DNA MER2_type 1 59 -594 1420 174 157 53 chr4 41014223 41014531 -161313816 + MSTD LTR MaLR 1 352 -44 1967 142 28 0 chr4 41014531 41014819 -161313528 + AluSx SINE Alu 1 296 -16 1420 174 157 53 chr4 41014819 41014867 -161313480 + MSTD LTR MaLR 352 394 -2 872 163 0 15 chr4 41014947 41015082 -161313265 + FLAM_C SINE Alu 1 133 0 1085 0 0 8 chr4 41015191 41015317 -161313030 + (GAA)n Simple_repeat Simple_repeat 2 126 0 771 184 77 0 chr4 41016456 41016624 -161311723 - MER3 DNA MER1_type -28 181 1 684 120 0 0 chr4 41016682 41016782 -161311565 + L1MB3 LINE L1 6077 6176 -7 216 0 0 0 chr4 41017767 41017791 -161310556 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1315 139 0 5 chr4 41017797 41017984 -161310363 - AluJb SINE Alu -42 270 85 2274 78 7 0 chr4 41018965 41019274 -161309073 + AluSp SINE Alu 1 311 0 285 152 45 15 chr4 41019277 41019343 -161309004 + HAL1 LINE L1 1572 1639 -868 281 296 50 22 chr4 41019509 41019688 -161308659 + L1 LINE L1 2669 2852 -3294 1709 171 3 18 chr4 41019722 41020008 -161308339 + AluJo SINE Alu 1 282 -30 225 0 0 0 chr4 41020012 41020037 -161308310 + (CAA)n Simple_repeat Simple_repeat 2 26 0 26 64 0 0 chr4 41020130 41020177 -161308170 + AT_rich Low_complexity Low_complexity 1 47 0 232 226 0 97 chr4 41020306 41020399 -161307948 - L2 LINE L2 -9 3263 3180 1778 158 0 50 chr4 41021994 41022297 -161306050 + AluJo SINE Alu 3 290 -22 1815 215 42 58 chr4 41022489 41023010 -161305337 - L1ME1 LINE L1 -5 6161 5649 546 202 0 0 chr4 41023071 41023170 -161305177 - AluJo SINE Alu -83 229 131 1824 192 92 16 chr4 41023172 41023834 -161304513 - L1ME1 LINE L1 -510 5656 4943 816 186 12 12 chr4 41023881 41024042 -161304305 - L1ME1 LINE L1 -1191 4955 4795 25 75 0 0 chr4 41024050 41024103 -161304244 + AT_rich Low_complexity Low_complexity 1 53 0 2349 155 11 8 chr4 41024105 41024486 -161303861 + MER57A LTR ERV1 22 403 0 1852 218 37 7 chr4 41024489 41024943 -161303404 - L1ME1 LINE L1 -1358 4788 4321 724 147 0 0 chr4 41024944 41025046 -161303301 - AluJo SINE Alu -182 130 29 551 234 17 116 chr4 41025046 41025325 -161303022 - L1ME1 LINE L1 -1819 4327 4046 5917 36 0 13 chr4 41025328 41026015 -161302332 - SVA Other Other 0 1386 709 203 257 162 0 chr4 41026220 41026294 -161302053 + L2 LINE L2 2913 2998 -274 2596 60 0 0 chr4 41026327 41026627 -161301720 + AluSx SINE Alu 1 300 -12 1235 131 0 0 chr4 41026627 41026802 -161301545 + AluSg/x SINE Alu 134 308 -4 334 280 73 86 chr4 41026804 41027036 -161301311 + L2 LINE L2 3044 3272 0 2958 229 99 32 chr4 41027075 41028092 -161300255 - L1ME1 LINE L1 -2102 4044 2960 385 268 86 5 chr4 41028098 41028276 -161300071 + L2 LINE L2 996 1286 -2028 969 167 52 23 chr4 41028276 41028450 -161299897 - MER5A DNA MER1_type 0 189 11 678 266 119 52 chr4 41028426 41028948 -161299399 + L2 LINE L2 1253 3184 -129 * 276 206 40 119 chr4 41029286 41029412 -161298935 - MIR SINE MIR -13 249 134 305 294 125 15 chr4 41029995 41030131 -161298216 - L1M4 LINE L1 -1957 4189 4039 1946 91 15 8 chr4 41030172 41030435 -161297912 + AluSx SINE Alu 41 305 -7 4514 177 30 94 chr4 41031608 41032700 -161295647 + L1MC2 LINE L1 5192 6199 -145 2360 61 0 0 chr4 41032700 41033006 -161295341 - AluY SINE Alu 0 309 4 4514 177 30 94 chr4 41033006 41033144 -161295203 + L1MC2 LINE L1 6199 6344 0 1783 212 80 61 chr4 41033157 41033219 -161295128 + L1ME LINE L1 4832 4891 -1275 2360 92 0 3 chr4 41033219 41033523 -161294824 - AluSq SINE Alu -6 307 5 1783 212 80 61 chr4 41033523 41033577 -161294770 + L1ME LINE L1 4891 4942 -1224 225 0 0 0 chr4 41033577 41033602 -161294745 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1783 212 80 61 chr4 41033602 41033740 -161294607 + L1ME LINE L1 4942 5076 -1090 1580 188 0 20 chr4 41033740 41034032 -161294315 + AluJb SINE Alu 9 294 -18 1783 212 80 61 chr4 41034032 41034743 -161293604 + L1ME LINE L1 5076 5811 -355 897 341 79 30 chr4 41034753 41035578 -161292769 - MERVL LTR ERVL -897 4588 3724 256 282 86 8 chr4 41035708 41035825 -161292522 - MERVL LTR ERVL -1975 3510 3385 972 274 38 34 chr4 41036299 41036625 -161291722 - LTR16A LTR ERVL -55 395 58 300 283 53 41 chr4 41036815 41037301 -161291046 - L1MDa LINE L1 -851 1639 897 22 35 0 0 chr4 41037439 41037468 -161290879 + AT_rich Low_complexity Low_complexity 1 29 0 530 172 0 0 chr4 41037468 41037561 -161290786 - L1MA5A LINE L1 0 6297 6205 27 0 0 0 chr4 41039465 41039492 -161288855 + AT_rich Low_complexity Low_complexity 1 27 0 348 279 27 95 chr4 41039494 41039641 -161288706 - MIR SINE MIR -120 142 6 2464 86 0 0 chr4 41039656 41039960 -161288387 - AluY SINE Alu -7 304 1 186 103 0 0 chr4 41040395 41040424 -161287923 + (GA)n Simple_repeat Simple_repeat 1 29 0 806 11 0 0 chr4 41044955 41045045 -161283302 + 5S rRNA rRNA 1 90 -31 2354 81 0 7 chr4 41045237 41045544 -161282803 + AluSc SINE Alu 1 305 -4 2309 77 7 10 chr4 41045912 41046212 -161282135 - AluSx SINE Alu -13 299 1 21 0 0 0 chr4 41046418 41046439 -161281908 + AT_rich Low_complexity Low_complexity 1 21 0 454 106 106 0 chr4 41046447 41046513 -161281834 + AluS SINE Alu 4 76 -237 2152 77 4 7 chr4 41046514 41046788 -161281559 - AluSq SINE Alu -40 273 1 2049 114 3 50 chr4 41046808 41047125 -161281222 - AluSp SINE Alu -11 302 1 1450 181 12 116 chr4 41047507 41047705 -161280642 - AluJo SINE Alu 0 302 85 2013 142 0 26 chr4 41047705 41048015 -161280332 - AluSx SINE Alu -10 302 1 2334 83 0 3 chr4 41048018 41048319 -161280028 - AluSg SINE Alu -10 300 1 1450 181 12 116 chr4 41048319 41048453 -161279894 - AluJo SINE Alu -219 83 1 1602 163 0 78 chr4 41048827 41048949 -161279398 + AluJb SINE Alu 1 131 -181 2405 84 3 0 chr4 41048949 41049245 -161279102 - AluSp SINE Alu -16 297 1 1602 163 0 78 chr4 41049245 41049454 -161278893 + AluJb SINE Alu 131 306 -6 2007 100 0 4 chr4 41049558 41049828 -161278519 + AluSq SINE Alu 35 303 -10 368 331 47 0 chr4 41049840 41049967 -161278380 + HERVL68 LTR ERVL 1084 1216 -4314 406 56 14 113 chr4 41050011 41050082 -161278265 + Alu SINE Alu 237 300 -11 482 226 49 0 chr4 41050148 41050250 -161278097 + HERVL68 LTR ERVL 3510 3616 -1914 257 143 24 0 chr4 41050244 41050286 -161278061 + HERVL68 LTR ERVL 3765 3807 -1723 * 593 341 70 24 chr4 41050561 41050930 -161277417 + HERVL68 LTR ERVL 2490 2875 -2655 2197 92 0 3 chr4 41050946 41051260 -161277087 - AluSc SINE Alu 0 313 1 1422 177 106 40 chr4 41051266 41051588 -161276759 - MLT1D LTR MaLR 0 505 163 180 0 0 0 chr4 41051755 41051775 -161276572 + (TG)n Simple_repeat Simple_repeat 2 21 0 1406 120 0 14 chr4 41051915 41052123 -161276224 - AluSq SINE Alu -5 308 104 1407 127 0 14 chr4 41052132 41052344 -161276003 - AluSg/x SINE Alu 0 310 102 2138 123 16 7 chr4 41052349 41052658 -161275689 - AluSx SINE Alu 0 312 1 288 163 0 0 chr4 41052673 41052716 -161275631 - MER57A LTR ERV1 -66 337 295 2069 128 3 0 chr4 41053181 41053469 -161274878 - AluSx SINE Alu -23 289 1 2232 114 0 7 chr4 41053603 41053910 -161274437 + AluSq SINE Alu 1 305 -8 2255 85 10 3 chr4 41053910 41054217 -161274130 + AluY SINE Alu 1 309 -2 391 200 38 19 chr4 41054222 41054327 -161274020 + HERVL68 LTR ERVL 701 807 -2230 243 0 0 0 chr4 41054441 41054468 -161273879 + (A)n Simple_repeat Simple_repeat 1 27 0 696 200 13 13 chr4 41056357 41056507 -161271840 + HERVL68 LTR ERVL 770 919 -2118 2100 127 13 0 chr4 41056519 41056818 -161271529 + AluSg SINE Alu 1 303 -7 2277 101 0 3 chr4 41056830 41057137 -161271210 + AluSg SINE Alu 1 306 -4 2467 81 0 3 chr4 41057189 41057497 -161270850 + AluSg1 SINE Alu 1 307 -2 1687 159 17 23 chr4 41057528 41057830 -161270517 + AluJb SINE Alu 1 300 -12 1975 164 38 50 chr4 41057830 41058097 -161270250 + HERVL68 LTR ERVL 929 1191 -1846 2134 133 0 0 chr4 41058097 41058399 -161269948 + AluSx SINE Alu 1 302 -10 1975 164 38 50 chr4 41058399 41058552 -161269795 + HERVL68 LTR ERVL 1191 1344 -1693 2610 124 24 66 chr4 41058552 41058603 -161269744 - MER57B LTR ERV1 0 434 382 2487 64 0 0 chr4 41058603 41058898 -161269449 + AluY SINE Alu 1 295 -16 2610 124 24 66 chr4 41058898 41059299 -161269048 - MER57B LTR ERV1 -52 382 1 1595 81 124 4 chr4 41059303 41059537 -161268810 - MER57B-int LTR ERV1 -4 7533 7272 619 111 30 104 chr4 41059537 41059583 -161268764 - LTR54B LTR ERV1 -371 127 79 2493 59 9 31 chr4 41059583 41059903 -161268444 - AluSp SINE Alu 0 313 1 619 111 30 104 chr4 41059903 41059991 -161268356 - LTR54B LTR ERV1 -419 79 3 2814 94 0 0 chr4 41059991 41060352 -161267995 - MER57B-int LTR ERV1 -389 7148 6788 2493 74 7 0 chr4 41060357 41060666 -161267681 + AluY SINE Alu 1 311 0 619 94 0 62 chr4 41060674 41060770 -161267577 + AluS SINE Alu 2 91 -222 307 93 0 0 chr4 41060770 41060813 -161267534 - Alu SINE Alu -258 43 1 939 111 24 83 chr4 41060813 41060996 -161267351 - MER57-int LTR ERV1 -4402 1451 1259 2254 116 0 0 chr4 41060996 41061297 -161267050 + AluSx SINE Alu 1 301 -11 939 111 24 83 chr4 41061297 41061417 -161266930 - MER57-int LTR ERV1 -4594 1259 632 2736 179 48 25 chr4 41061441 41061867 -161266480 + HERVL68 LTR ERVL 1377 1821 -1216 4257 77 9 0 chr4 41061867 41062416 -161265931 - MER41A LTR ERV1 0 554 1 2736 179 48 25 chr4 41062416 41062553 -161265794 + HERVL68 LTR ERVL 1821 1953 -1084 2431 85 3 0 chr4 41062554 41062859 -161265488 - AluSp SINE Alu -7 306 1 735 239 117 9 chr4 41063434 41063656 -161264691 + REP3 LTR ERV 290 535 -27 2179 132 30 28 chr4 41063661 41064024 -161264323 + THE1B LTR MaLR 1 364 0 6546 95 3 0 chr4 41064025 41064889 -161263458 + THE1B-int LTR MaLR 2 868 -712 637 228 7 0 chr4 41064893 41065029 -161263318 + L1P LINE L1 4187 4323 -1823 1907 141 3 3 chr4 41065036 41065340 -161263007 + AluSx SINE Alu 3 306 -6 273 162 4 70 chr4 41065351 41065416 -161262931 + AluJo SINE Alu 83 134 -168 1476 85 39 61 chr4 41065435 41065644 -161262703 + L1P4 LINE L1 5128 5331 -834 2297 116 0 13 chr4 41065644 41065954 -161262393 + AluSq SINE Alu 1 306 -7 1476 85 39 61 chr4 41065954 41066122 -161262225 + L1P4 LINE L1 5331 5501 -664 1953 125 18 4 chr4 41066122 41066403 -161261944 + AluSq SINE Alu 1 285 -28 477 0 0 0 chr4 41066403 41066456 -161261891 + (CTAAA)n Simple_repeat Simple_repeat 3 55 0 1969 106 8 0 chr4 41066467 41066731 -161261616 + AluSx SINE Alu 1 266 -46 1397 128 0 137 chr4 41066734 41066891 -161261456 - AluJb SINE Alu -40 272 178 1437 117 147 71 chr4 41066891 41067157 -161261190 - AluSx SINE Alu -26 286 1 1397 128 0 137 chr4 41067157 41067312 -161261035 - AluJb SINE Alu -134 178 3 2049 133 0 0 chr4 41067359 41067645 -161260702 - AluSx SINE Alu -26 286 1 659 156 57 8 chr4 41067998 41068120 -161260227 + FLAM_C SINE Alu 12 139 -4 2227 119 0 6 chr4 41068151 41068462 -161259885 - AluSc SINE Alu 0 309 1 2396 70 0 0 chr4 41068467 41068775 -161259572 - AluY SINE Alu 0 308 1 2188 126 0 0 chr4 41068790 41069091 -161259256 - AluSx SINE Alu -11 301 1 1762 128 12 0 chr4 41069107 41069349 -161258998 - AluSg SINE Alu -16 294 50 736 218 49 71 chr4 41069349 41069391 -161258956 - L1MDa LINE L1 -4380 2160 2119 2142 118 3 3 chr4 41069391 41069695 -161258652 + AluSc SINE Alu 1 304 -5 736 218 49 71 chr4 41069695 41069960 -161258387 - L1MDa LINE L1 -4421 2119 1860 727 154 0 70 chr4 41069999 41070142 -161258205 - FLAM_C SINE Alu 0 133 1 1692 100 0 9 chr4 41070237 41070466 -161257881 - AluSg/x SINE Alu -4 306 80 718 95 0 0 chr4 41070466 41070561 -161257786 - AluSg SINE Alu -188 122 28 244 259 120 0 chr4 41070576 41070684 -161257663 - L1MDa LINE L1 -4782 1758 1638 244 195 0 0 chr4 41070695 41070736 -161257611 - MER57A LTR ERV1 -67 336 296 509 214 44 87 chr4 41070736 41070942 -161257405 - L1MDa LINE L1 -4873 1667 1471 334 175 0 0 chr4 41070956 41071019 -161257328 - AluS SINE Alu -7 295 233 875 129 0 0 chr4 41071178 41071302 -161257045 + AluSg/x SINE Alu 173 296 -14 1985 147 7 3 chr4 41071775 41072082 -161256265 - AluSx SINE Alu -4 308 1 857 168 0 0 chr4 41072192 41072323 -161256024 - FLAM_C SINE Alu -2 131 1 2336 103 0 3 chr4 41072520 41072820 -161255527 + AluSc SINE Alu 2 300 -9 681 197 15 29 chr4 41072832 41072969 -161255378 - AluJo SINE Alu -176 136 2 216 111 0 0 chr4 41073240 41073276 -161255071 + (TCC)n Simple_repeat Simple_repeat 3 38 0 233 186 314 0 chr4 41073490 41073592 -161254755 - Charlie1 DNA MER1_type -3 2758 2625 1472 171 75 0 chr4 41073592 41073873 -161254474 + AluJo SINE Alu 1 302 0 188 135 27 0 chr4 41073877 41073914 -161254433 + (TTATA)n Simple_repeat Simple_repeat 1 38 0 2073 113 13 17 chr4 41073914 41074077 -161254270 - AluSx SINE Alu -13 299 136 2271 106 13 0 chr4 41074077 41074379 -161253968 - AluSp SINE Alu -6 307 2 2073 113 13 17 chr4 41074379 41074515 -161253832 - AluSx SINE Alu -176 136 1 2365 43 4 7 chr4 41074537 41074817 -161253530 - AluY SINE Alu -7 304 26 234 0 0 0 chr4 41075023 41075049 -161253298 + (TG)n Simple_repeat Simple_repeat 2 27 0 275 80 0 100 chr4 41075064 41075114 -161253233 - AluY SINE Alu -256 46 2 2587 42 13 0 chr4 41075446 41075753 -161252594 + AluY SINE Alu 1 311 0 940 211 0 0 chr4 41075758 41075919 -161252428 + AluJb SINE Alu 129 289 -23 234 0 0 0 chr4 41075922 41075948 -161252399 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 583 248 101 50 chr4 41075951 41075985 -161252362 - Charlie1 DNA MER1_type -2517 244 213 2288 81 27 3 chr4 41075985 41076282 -161252065 + AluY SINE Alu 1 304 -7 583 248 101 50 chr4 41076282 41076445 -161251902 - Charlie1 DNA MER1_type -2548 213 37 1813 138 41 14 chr4 41076615 41076934 -161251413 + AluSx SINE Alu 1 312 0 2491 74 3 0 chr4 41076945 41077244 -161251103 + AluSp SINE Alu 1 300 -13 183 42 0 0 chr4 41077247 41077271 -161251076 + (TTA)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr4 41077733 41077756 -161250591 + AT_rich Low_complexity Low_complexity 1 23 0 1973 123 21 0 chr4 41077884 41078169 -161250178 - AluSp SINE Alu -22 291 1 1409 141 0 35 chr4 41078320 41078547 -161249800 + AluJo SINE Alu 91 309 -3 2326 107 3 0 chr4 41078555 41078864 -161249483 + AluSq SINE Alu 1 310 -3 2256 122 0 0 chr4 41079009 41079304 -161249043 + AluSg SINE Alu 1 295 -15 909 251 67 110 chr4 41079605 41080014 -161248333 - MLT1H LTR MaLR -11 538 154 1929 147 0 0 chr4 41080014 41080300 -161248047 + AluJb SINE Alu 1 286 -26 909 251 67 110 chr4 41080300 41080399 -161247948 - MLT1H LTR MaLR -395 154 52 2700 20 0 0 chr4 41080902 41081196 -161247151 + AluY SINE Alu 1 294 -17 1611 118 0 0 chr4 41081296 41081507 -161246840 - AluSx SINE Alu -101 211 1 4417 185 23 26 chr4 41081513 41081605 -161246742 - L1MB8 LINE L1 -6 6172 6081 2296 106 3 13 chr4 41081605 41081917 -161246430 + AluSx SINE Alu 1 309 -3 4417 185 23 26 chr4 41081917 41082867 -161245480 - L1MB8 LINE L1 -97 6081 5136 266 353 119 22 chr4 41083029 41083517 -161244830 - L2 LINE L2 -476 2838 2304 1231 240 148 5 chr4 41083519 41083890 -161244457 - LTR16A LTR ERVL 0 450 27 764 275 57 13 chr4 41084096 41084325 -161244022 - MLT1L LTR MaLR -9 606 368 1449 188 107 61 chr4 41084415 41084808 -161243539 - MER21B LTR ERV1 -69 794 384 1002 169 28 0 chr4 41085910 41086087 -161242260 - MER105 DNA DNA -2 202 21 2037 188 59 14 chr4 41086180 41086276 -161242071 - MER74C LTR ERVL -16 444 354 2928 127 2 2 chr4 41086276 41086701 -161241646 + MER61B LTR ERV1 1 425 0 2037 188 59 14 chr4 41086701 41087025 -161241322 - MER74C LTR ERVL -106 354 5 1666 211 13 40 chr4 41087203 41087583 -161240764 - MLT1A2 LTR MaLR -4 370 1 227 167 56 111 chr4 41087648 41087670 -161240677 + L2 LINE L2 1910 1932 -1382 2353 71 0 83 chr4 41087670 41088009 -161240338 - AluY SINE Alu 0 311 1 227 167 56 111 chr4 41088009 41088058 -161240289 + L2 LINE L2 1932 1977 -1337 180 0 0 0 chr4 41088172 41088192 -161240155 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2184 113 3 0 chr4 41088274 41088565 -161239782 - AluSg SINE Alu -5 305 14 1478 251 38 53 chr4 41088590 41089173 -161239174 + MER68 LTR ERV1 1 535 -27 1097 210 56 68 chr4 41089405 41089801 -161238546 - LTR37B LTR ERV1 -77 391 1 305 204 0 0 chr4 41090209 41090263 -161238084 + MLT1A1 LTR MaLR 5 58 -307 3505 94 41 8 chr4 41090271 41090779 -161237568 + MER11A LTR ERVK 1 525 -741 1697 171 0 52 chr4 41090968 41091278 -161237069 - AluJo SINE Alu -8 304 11 240 330 37 53 chr4 41091702 41092023 -161236324 - L2 LINE L2 -710 2604 2289 1664 139 52 8 chr4 41092404 41092671 -161235676 + AluSp SINE Alu 21 299 -14 2257 84 35 0 chr4 41093115 41093402 -161234945 - AluSp SINE Alu -16 297 1 203 183 49 24 chr4 41093879 41093961 -161234386 + T-rich Low_complexity Low_complexity 2 85 0 367 227 10 10 chr4 41094953 41095050 -161233297 + MIR SINE MIR 112 208 -54 318 308 10 19 chr4 41095448 41095552 -161232795 + CT-rich Low_complexity Low_complexity 4 106 0 1993 120 49 37 chr4 41095564 41095889 -161232458 + THE1B LTR MaLR 1 329 -35 186 43 0 0 chr4 41095902 41095925 -161232422 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 203 0 37 0 chr4 41096086 41096113 -161232234 + (GA)n Simple_repeat Simple_repeat 1 28 0 262 265 0 12 chr4 41096639 41096722 -161231625 + GA-rich Low_complexity Low_complexity 1 82 0 458 75 0 0 chr4 41096726 41096793 -161231554 + Alu SINE Alu 244 310 0 949 240 14 5 chr4 41097734 41097951 -161230396 + MER20 DNA MER1_type 1 219 0 43409 36 23 2 chr4 41098433 41104459 -161223888 - L1PA2 LINE L1 -1 6154 1 6611 127 57 11 chr4 41105566 41106544 -161221803 + L1M1 LINE L1 1814 2852 -4713 2080 126 7 7 chr4 41106544 41106846 -161221501 + AluSg SINE Alu 1 302 -8 6611 127 57 11 chr4 41106846 41106984 -161221363 + L1M1 LINE L1 2852 2982 -4583 6296 166 38 20 chr4 41106981 41108242 -161220105 + L1M1 LINE L1 5418 6734 -990 * 1833 50 0 0 chr4 41108242 41108464 -161219883 - L1PA5 LINE L1 -2 6152 5931 6296 166 38 20 chr4 41108464 41108962 -161219385 + L1M1 LINE L1 6734 7221 -503 995 123 19 0 chr4 41109079 41109234 -161219113 - MER4B LTR ERV1 -452 158 1 213 205 0 0 chr4 41111283 41111322 -161217025 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 1813 175 49 17 chr4 41112613 41113238 -161215109 + MER44D DNA MER2_type 2 705 0 341 267 77 62 chr4 41113280 41113475 -161214872 - HAL1 LINE L1 -4 2503 2306 512 117 0 68 chr4 41113630 41113645 -161214702 + L1P5 LINE L1 5693 5707 -449 962 206 0 0 chr4 41113645 41113829 -161214518 - L1PB4 LINE L1 0 6156 5973 512 117 0 68 chr4 41113829 41113916 -161214431 + L1P5 LINE L1 5707 5788 -368 223 289 26 26 chr4 41114626 41114702 -161213645 - L2 LINE L2 0 3313 3238 216 345 103 14 chr4 41115786 41115931 -161212416 - L2 LINE L2 -578 2736 2579 870 224 8 77 chr4 41116037 41116283 -161212064 + AluJo SINE Alu 1 229 -83 250 100 0 0 chr4 41116285 41116325 -161212022 + FLAM_A SINE Alu 20 59 -73 597 216 0 0 chr4 41116325 41116441 -161211906 + AluJb SINE Alu 158 273 -39 2025 132 27 0 chr4 41116761 41116935 -161211412 - AluSx SINE Alu -8 304 117 279 0 0 0 chr4 41116935 41116966 -161211381 + (TG)n Simple_repeat Simple_repeat 2 32 0 2025 132 27 0 chr4 41116966 41117086 -161211261 - AluSx SINE Alu -195 117 2 272 320 87 60 chr4 41117260 41117629 -161210718 + L2 LINE L2 2935 3313 0 3659 62 2 8 chr4 41117725 41118208 -161210139 + L1PA8 LINE L1 5693 6172 0 258 290 0 11 chr4 41118270 41118363 -161209984 - MIR SINE MIR -24 238 147 2239 121 0 0 chr4 41120484 41120782 -161207565 - AluSg SINE Alu -12 298 1 219 214 0 0 chr4 41120924 41120994 -161207353 + (TGAA)n Simple_repeat Simple_repeat 4 73 0 2156 121 7 0 chr4 41121105 41121412 -161206935 + AluY SINE Alu 3 311 0 6863 198 26 8 chr4 41121440 41122438 -161205909 - L1PA16 LINE L1 -10 6156 5177 2472 136 69 10 chr4 41122438 41122842 -161205505 - MSTA LTR MaLR 0 428 1 6863 198 26 8 chr4 41122842 41124471 -161203876 - L1PA16 LINE L1 -989 5177 3477 8325 175 13 8 chr4 41124487 41127163 -161201184 - L1PB1 LINE L1 -1 6853 4167 2871 221 20 1 chr4 41127162 41127923 -161200424 + L1 LINE L1 2698 3472 -2674 * 3116 271 26 14 chr4 41127920 41129359 -161198988 - L1PB1 LINE L1 -2662 4187 2731 3010 149 22 2 chr4 41129374 41129916 -161198431 + L1MB4 LINE L1 5628 6180 0 2356 103 0 0 chr4 41130297 41130597 -161197750 + AluSx SINE Alu 2 301 -11 4314 41 9 0 chr4 41130785 41131317 -161197030 + L1PA7 LINE L1 5618 6154 0 394 260 0 20 chr4 41131416 41131516 -161196831 - MLT1K LTR MaLR -329 259 162 1182 155 38 110 chr4 41132239 41132503 -161195844 + AluJo SINE Alu 1 245 -67 216 143 48 0 chr4 41132555 41132565 -161195782 + (TA)n Simple_repeat Simple_repeat 1 9 -57 2267 95 0 20 chr4 41132565 41132861 -161195486 + AluSc SINE Alu 1 290 -19 216 143 48 0 chr4 41132861 41132913 -161195434 + (TA)n Simple_repeat Simple_repeat 9 66 0 2581 52 0 0 chr4 41133138 41133448 -161194899 - AluY SINE Alu -1 310 1 283 285 46 69 chr4 41134045 41134141 -161194206 + L2 LINE L2 3146 3240 -32 2279 75 0 3 chr4 41134141 41134446 -161193901 - AluY SINE Alu -7 304 1 283 285 46 69 chr4 41134446 41134479 -161193868 + L2 LINE L2 3240 3272 0 1733 143 13 70 chr4 41134791 41135105 -161193242 + AluSx SINE Alu 1 296 -16 2307 108 0 0 chr4 41135530 41135835 -161192512 + AluSx SINE Alu 1 305 -7 2267 105 0 3 chr4 41136780 41137086 -161191261 - AluSx SINE Alu -7 305 1 484 101 51 0 chr4 41137086 41137165 -161191182 - L1M1 LINE L1 -5133 2432 2350 2821 41 8 0 chr4 41137169 41137533 -161190814 + L1P2 LINE L1 5374 5740 -414 212 352 0 0 chr4 41137633 41137687 -161190660 + (CGTG)n Simple_repeat Simple_repeat 2 55 0 227 246 79 35 chr4 41137687 41137801 -161190546 - L1ME LINE L1 -197 5924 5806 2263 59 41 31 chr4 41138037 41138357 -161189990 - L1PA12 LINE L1 0 6168 5846 1636 204 117 135 chr4 41138574 41139376 -161188971 + LTR28 LTR ERV1 1 972 -48 523 272 14 12 chr4 41139390 41139545 -161188802 + LTR28 LTR ERV1 666 1020 0 471 304 111 18 chr4 41140131 41140411 -161187936 + MLT1L LTR MaLR 308 613 -2 2230 124 48 22 chr4 41140493 41140848 -161187499 + THE1B LTR MaLR 1 364 0 11604 85 10 10 chr4 41140848 41142428 -161185919 + THE1B-int LTR MaLR 1 1580 0 1850 143 49 26 chr4 41142440 41142790 -161185557 + THE1B LTR MaLR 7 364 0 3674 136 12 71 chr4 41143263 41143997 -161184350 - LTR8 LTR ERV1 0 691 1 1627 160 225 13 chr4 41144135 41144517 -161183830 - LTR32 LTR ERVL 0 471 9 1495 180 107 42 chr4 41144815 41145142 -161183205 + LTR29 LTR ERV1 137 441 -154 2274 133 28 19 chr4 41145142 41145503 -161182844 + THE1B LTR MaLR 1 364 0 11390 94 14 6 chr4 41145503 41147071 -161181276 + THE1B-int LTR MaLR 1 1580 0 1924 128 7 126 chr4 41147071 41147484 -161180863 + THE1B LTR MaLR 1 364 0 1495 180 107 42 chr4 41147484 41147615 -161180732 + LTR29 LTR ERV1 440 591 -4 275 216 108 54 chr4 41147614 41147725 -161180622 - LTR8A LTR ERV1 -125 602 486 * 1074 134 13 71 chr4 41147846 41148070 -161180277 + MER20 DNA MER1_type 2 212 -7 1953 166 110 46 chr4 41148212 41148829 -161179518 - LTR8A LTR ERV1 0 691 34 214 318 101 16 chr4 41149456 41149585 -161178762 + L2 LINE L2 3133 3272 0 1031 217 55 38 chr4 41149924 41150376 -161177971 - LTR56 LTR ERV1 0 445 9 196 367 184 0 chr4 41151447 41151556 -161176791 - L2 LINE L2 0 3272 3144 795 240 47 47 chr4 41151573 41151873 -161176474 + LTR33 LTR ERVL 19 318 -203 674 174 94 7 chr4 41152541 41152679 -161175668 - MIR SINE MIR -105 157 8 716 252 69 12 chr4 41152707 41152953 -161175394 - MLT1J1 LTR MaLR 0 446 187 812 258 155 11 chr4 41153223 41153584 -161174763 - LTR33A LTR ERVL -4 519 107 528 186 145 8 chr4 41153585 41153709 -161174638 + MER49 LTR ERV1 1 141 -782 225 255 0 0 chr4 41153822 41153873 -161174474 + LTR67 LTR ERVL 146 196 -361 198 322 130 43 chr4 41154151 41154452 -161173895 + L2 LINE L2 1064 1390 -1924 227 30 0 30 chr4 41154684 41154717 -161173630 + (TG)n Simple_repeat Simple_repeat 1 32 0 269 291 9 18 chr4 41154822 41154932 -161173415 - L1ME LINE L1 -452 5669 5561 1892 172 3 0 chr4 41155343 41155646 -161172701 + AluJo SINE Alu 1 304 -8 355 331 24 0 chr4 41155734 41155861 -161172486 - L1ME LINE L1 -1131 5015 4886 332 245 21 43 chr4 41156027 41156121 -161172226 - MIR3 SINE MIR -12 196 105 511 287 52 0 chr4 41156643 41156779 -161171568 + MIR3 SINE MIR 60 202 -6 22 0 0 0 chr4 41157173 41157195 -161171152 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 41157926 41157948 -161170399 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr4 41158135 41158159 -161170188 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1595 147 0 0 chr4 41158166 41158397 -161169950 - AluSx SINE Alu -57 255 25 229 36 0 0 chr4 41158413 41158441 -161169906 - AluSx SINE Alu -254 48 21 382 303 119 25 chr4 41158481 41158758 -161169589 - L1ME3A LINE L1 -219 5951 5649 970 217 13 17 chr4 41158759 41158989 -161169358 + MER58B DNA MER1_type 1 229 -112 22 0 0 0 chr4 41159272 41159294 -161169053 + AT_rich Low_complexity Low_complexity 1 22 0 2216 131 141 48 chr4 41160045 41160580 -161167767 + MER4B LTR ERV1 1 772 -7 2552 90 0 0 chr4 41160580 41160892 -161167455 - AluSx SINE Alu 0 312 1 1693 139 3 110 chr4 41161262 41161486 -161166861 - AluJb SINE Alu -11 301 123 2194 116 61 12 chr4 41161486 41161832 -161166515 + THE1B LTR MaLR 2 364 0 1693 139 3 110 chr4 41161832 41161944 -161166403 - AluJb SINE Alu -189 123 1 256 226 0 2 chr4 41161965 41162032 -161166315 - L1ME3A LINE L1 -607 5577 5512 2148 138 0 0 chr4 41162757 41163062 -161165285 + AluSq SINE Alu 1 305 -8 2290 234 44 14 chr4 41163104 41163737 -161164610 - MER97a DNA MER1_type? 0 894 243 661 233 0 14 chr4 41163809 41163955 -161164392 + MER33 DNA MER1_type 2 145 -179 373 191 0 0 chr4 41163947 41164015 -161164332 + MLT1F1 LTR MaLR 500 567 0 * 565 158 39 31 chr4 41164188 41164315 -161164032 + L1MB3 LINE L1 6054 6181 -2 441 0 0 0 chr4 41164987 41165036 -161163311 + (TG)n Simple_repeat Simple_repeat 1 49 0 188 125 25 50 chr4 41165092 41165132 -161163215 - MER5B DNA MER1_type -124 54 16 2337 113 0 0 chr4 41165218 41165527 -161162820 - AluSc SINE Alu 0 309 1 541 222 216 0 chr4 41165540 41165707 -161162640 + L2 LINE L2 1945 2147 -1167 1496 271 93 37 chr4 41165788 41165982 -161162365 - HAL1 LINE L1 0 2507 2325 225 0 0 0 chr4 41165982 41166007 -161162340 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1496 271 93 37 chr4 41166007 41166042 -161162305 - HAL1 LINE L1 -182 2325 2293 1540 156 46 49 chr4 41166042 41166224 -161162123 - AluJb SINE Alu -6 306 124 2104 111 38 0 chr4 41166224 41166512 -161161835 + AluSp SINE Alu 5 303 -10 1540 156 46 49 chr4 41166512 41166636 -161161711 - AluJb SINE Alu -188 124 1 1496 271 93 37 chr4 41166636 41167154 -161161193 - HAL1 LINE L1 -214 2293 1717 3043 257 95 63 chr4 41167160 41167372 -161160975 - HAL1 LINE L1 -1087 1420 1216 1769 168 7 10 chr4 41167372 41167664 -161160683 + AluJb SINE Alu 1 291 -21 3043 257 95 63 chr4 41167664 41168818 -161159529 - HAL1 LINE L1 -1291 1216 10 2125 137 73 9 chr4 41169112 41169455 -161158892 + MLT1A1 LTR MaLR 1 365 0 258 32 0 0 chr4 41169990 41170021 -161158326 + (GA)n Simple_repeat Simple_repeat 2 32 0 2017 149 129 48 chr4 41170130 41170526 -161157821 - MSTA LTR MaLR 0 428 1 198 0 0 0 chr4 41170893 41170915 -161157432 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 180 0 0 0 chr4 41170977 41170997 -161157350 + (A)n Simple_repeat Simple_repeat 1 20 0 2494 77 0 3 chr4 41171500 41171812 -161156535 + AluSx SINE Alu 1 311 -1 361 267 23 0 chr4 41172152 41172238 -161156109 - L2 LINE L2 0 3313 3226 2164 187 19 16 chr4 41172361 41172453 -161155894 - MER63B DNA MER1_type -626 436 346 2514 122 96 15 chr4 41172453 41172848 -161155499 + MSTA LTR MaLR 1 427 -1 2164 187 19 16 chr4 41172848 41173182 -161155165 - MER63B DNA MER1_type -716 346 9 344 299 229 0 chr4 41173190 41173334 -161155013 - L2 LINE L2 -261 3052 2876 243 263 62 25 chr4 41173341 41173421 -161154926 - L2 LINE L2 -74 3198 3116 694 189 74 74 chr4 41173431 41173481 -161154866 + L1MC5 LINE L1 7350 7399 -562 2343 107 0 19 chr4 41173481 41173799 -161154548 + AluSx SINE Alu 1 312 0 694 189 74 74 chr4 41173799 41173992 -161154355 + L1MC5 LINE L1 7398 7593 -368 7094 52 13 19 chr4 41174001 41175507 -161152840 + SVA Other Other 5 1386 0 21 0 0 0 chr4 41176042 41176063 -161152284 + AT_rich Low_complexity Low_complexity 1 21 0 964 181 50 50 chr4 41176099 41176381 -161151966 + L1MC5 LINE L1 7580 7861 -100 448 322 20 45 chr4 41176715 41176914 -161151433 + MIR3 SINE MIR 3 196 -12 2253 119 0 0 chr4 41177349 41177643 -161150704 + AluSg SINE Alu 1 294 -16 1899 130 0 38 chr4 41178330 41178645 -161149702 + AluSx SINE Alu 1 304 0 1202 114 0 0 chr4 41178645 41178812 -161149535 + AluSg/x SINE Alu 137 303 -9 693 194 161 0 chr4 41178820 41179006 -161149341 - L1ME3A LINE L1 -28 6142 5927 809 219 70 0 chr4 41179028 41179229 -161149118 - L1ME1 LINE L1 -11 6155 5941 857 69 25 119 chr4 41179242 41179402 -161148945 - AluJb SINE Alu -10 302 158 798 234 20 63 chr4 41179444 41179696 -161148651 - L1ME1 LINE L1 -277 5893 5653 1727 208 39 48 chr4 41179848 41180261 -161148086 + LTR2 LTR ERV1 41 449 0 408 260 40 44 chr4 41180262 41180554 -161147793 - L1ME1 LINE L1 -1123 5023 4650 190 227 45 0 chr4 41180586 41180630 -161147717 + L2 LINE L2 3202 3247 -25 764 178 52 35 chr4 41181942 41182116 -161146231 + MER45A DNA AcHobo 1 177 -1 187 163 122 20 chr4 41182155 41182204 -161146143 + L2 LINE L2 3259 3312 -1 184 288 88 12 chr4 41183483 41183563 -161144784 + MIR SINE MIR 91 176 -86 297 346 37 0 chr4 41183768 41183904 -161144443 - MIR SINE MIR -86 176 36 237 65 0 0 chr4 41184034 41184065 -161144282 + (TA)n Simple_repeat Simple_repeat 1 31 0 411 211 192 0 chr4 41184528 41184632 -161143715 - L2 LINE L2 0 3313 3190 2163 134 3 0 chr4 41185103 41185408 -161142939 + AluJb SINE Alu 1 306 -6 1874 240 118 36 chr4 41185556 41186106 -161142241 - MLT1G1 LTR MaLR 0 595 1 227 330 0 62 chr4 41186303 41186415 -161141932 - L3 LINE CR1 -36 1541 1437 566 347 38 8 chr4 41186868 41187130 -161141217 - L3 LINE CR1 -128 1449 1180 1705 179 7 17 chr4 41187469 41187760 -161140587 + AluJo SINE Alu 5 292 -20 705 266 116 13 chr4 41187903 41188136 -161140211 - MIR SINE MIR -3 259 3 286 236 112 11 chr4 41188149 41188238 -161140109 + MIR SINE MIR 47 144 -118 1813 170 10 17 chr4 41188244 41188544 -161139803 + AluJo SINE Alu 1 298 -14 308 208 158 30 chr4 41189339 41189440 -161138907 - MIR SINE MIR 0 262 149 724 256 12 0 chr4 41189504 41189676 -161138671 - MER58B DNA MER1_type 0 341 168 216 135 0 0 chr4 41191037 41191074 -161137273 + (TG)n Simple_repeat Simple_repeat 2 38 0 849 175 44 92 chr4 41191178 41191406 -161136941 - MER20 DNA MER1_type -2 217 1 385 358 30 6 chr4 41191408 41191573 -161136774 + MIR3 SINE MIR 28 196 -12 2172 116 0 0 chr4 41192079 41192372 -161135975 - AluSx SINE Alu -19 293 1 2305 92 20 7 chr4 41193303 41193606 -161134741 - AluSq SINE Alu -6 307 1 2006 147 3 7 chr4 41194566 41194872 -161133475 - AluSx SINE Alu -3 309 5 659 211 15 0 chr4 41194911 41195044 -161133303 - MER58B DNA MER1_type -6 335 201 189 171 0 0 chr4 41195142 41195177 -161133170 + (TATATG)n Simple_repeat Simple_repeat 4 38 0 260 222 86 0 chr4 41195246 41195327 -161133020 + L1MC4 LINE L1 6619 6706 -1336 270 0 0 0 chr4 41195348 41195378 -161132969 + (TG)n Simple_repeat Simple_repeat 1 30 0 524 267 107 48 chr4 41195698 41195904 -161132443 - Charlie8 DNA MER1_type -2162 255 38 232 291 0 0 chr4 41196000 41196055 -161132292 + (CGTG)n Simple_repeat Simple_repeat 4 58 0 280 328 129 13 chr4 41196055 41196287 -161132060 - L1MC/D LINE L1 -2145 5663 5405 301 91 18 18 chr4 41196344 41196399 -161131948 + (TA)n Simple_repeat Simple_repeat 1 55 0 682 226 65 57 chr4 41196781 41196849 -161131498 - MIR SINE MIR 0 262 196 1945 148 0 7 chr4 41196849 41197152 -161131195 - AluJb SINE Alu -11 301 1 682 226 65 57 chr4 41197152 41197331 -161131016 - MIR SINE MIR -66 196 13 427 242 53 8 chr4 41197369 41197501 -161130846 - L1 LINE L1 -1310 4836 4699 25 23 0 23 chr4 41197778 41197800 -161130547 + AT_rich Low_complexity Low_complexity 1 23 -19 1996 110 4 0 chr4 41197800 41198063 -161130284 - AluSp SINE Alu -14 299 36 25 23 0 23 chr4 41198063 41198083 -161130264 + AT_rich Low_complexity Low_complexity 23 42 0 2160 133 0 25 chr4 41198875 41199191 -161129156 + AluSx SINE Alu 1 308 -4 198 0 0 0 chr4 41199294 41199316 -161129031 + (TTTAA)n Simple_repeat Simple_repeat 3 24 0 261 208 0 0 chr4 41202521 41202569 -161125778 - L2 LINE L2 -9 3263 3216 2509 77 0 10 chr4 41202977 41203288 -161125059 + AluSq SINE Alu 1 308 -5 305 214 0 71 chr4 41203442 41203526 -161124821 - MER58B DNA MER1_type -68 273 196 2229 105 16 3 chr4 41203594 41203899 -161124448 - AluSx SINE Alu -3 309 1 1990 121 14 3 chr4 41203961 41204278 -161124069 - AluSq SINE Alu 0 320 1 22 35 0 0 chr4 41204609 41204638 -161123709 + AT_rich Low_complexity Low_complexity 1 29 0 1083 128 0 7 chr4 41204709 41204858 -161123489 + AluSq/x SINE Alu 1 148 -164 235 274 62 106 chr4 41204874 41204899 -161123448 - MIR3 SINE MIR -20 188 163 2352 109 0 0 chr4 41204899 41205201 -161123146 + AluSx SINE Alu 1 302 -10 235 274 62 106 chr4 41205201 41205354 -161122993 - MIR3 SINE MIR -45 163 18 841 203 68 0 chr4 41205355 41205532 -161122815 - MER5A DNA MER1_type 0 189 1 680 250 61 56 chr4 41205869 41206144 -161122203 - HAL1 LINE L1 -168 2339 2060 1272 181 55 65 chr4 41206144 41206454 -161121893 - AluJb SINE Alu -2 310 4 680 250 61 56 chr4 41206454 41206538 -161121809 - HAL1 LINE L1 -447 2060 1978 1034 230 142 93 chr4 41206555 41207304 -161121043 - HAL1 LINE L1 -622 1885 1101 1304 139 10 10 chr4 41207345 41207546 -161120801 - AluJo SINE Alu -28 284 84 474 218 105 65 chr4 41207547 41207795 -161120552 - HAL1 LINE L1 -1467 1040 783 536 273 145 67 chr4 41207874 41208453 -161119894 - HAL1 LINE L1 -1848 659 36 2247 98 3 22 chr4 41208531 41208849 -161119498 - AluSq SINE Alu -1 312 1 21 36 0 0 chr4 41208856 41208884 -161119463 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 41209064 41209092 -161119255 + AT_rich Low_complexity Low_complexity 1 28 0 3267 104 25 40 chr4 41209098 41209618 -161118729 - L1MA8 LINE L1 -8 6283 5772 2385 57 0 0 chr4 41210295 41210600 -161117747 + AluY SINE Alu 1 305 0 247 296 37 19 chr4 41210614 41210722 -161117625 - L2 LINE L2 -3 3310 3201 1828 158 36 26 chr4 41210945 41211332 -161117015 - Charlie5 DNA MER1_type 0 2624 2234 639 186 0 31 chr4 41211329 41211458 -161116889 - Charlie5 DNA MER1_type -2485 127 3 * 2021 130 9 40 chr4 41212519 41212841 -161115506 - AluSx SINE Alu 0 312 1 355 228 13 0 chr4 41213037 41213116 -161115231 - L1MC4 LINE L1 0 8042 7963 831 178 41 0 chr4 41213117 41213263 -161115084 - MER58B DNA MER1_type -10 331 180 282 202 84 146 chr4 41213289 41213467 -161114880 - L1MC4 LINE L1 -73 7969 7803 1370 211 41 57 chr4 41213492 41213881 -161114466 - MLT2C1 LTR ERVL -1 396 14 686 260 56 5 chr4 41214529 41214725 -161113622 - MIR SINE MIR 0 262 57 260 250 162 0 chr4 41217728 41217796 -161110551 + MIR SINE MIR 49 127 -81 900 191 38 11 chr4 41217804 41217987 -161110360 - L1MC1 LINE L1 -1 6332 6145 1315 102 91 0 chr4 41217987 41218184 -161110163 + L1MC1 LINE L1 5948 6162 -171 1963 146 7 0 chr4 41218205 41218492 -161109855 + AluJb SINE Alu 1 289 -23 1536 171 82 4 chr4 41218628 41218909 -161109438 - AluSq SINE Alu -10 303 1 2398 71 3 0 chr4 41220439 41220736 -161107611 - AluY SINE Alu -4 307 10 559 194 24 118 chr4 41221248 41221459 -161106888 - L1MC5 LINE L1 -78 7883 7693 1772 187 71 16 chr4 41221464 41221960 -161106387 + LTR27 LTR ERV1 3 501 0 1325 205 48 51 chr4 41221962 41222377 -161105970 - L1MC5 LINE L1 -271 7690 7277 2153 105 20 3 chr4 41223281 41223576 -161104771 - AluSc SINE Alu -9 300 1 1894 118 81 0 chr4 41223579 41223851 -161104496 - AluSp SINE Alu -19 294 1 342 161 103 58 chr4 41224202 41224289 -161104058 - L1MC5 LINE L1 -2045 5763 5673 5754 116 61 19 chr4 41224559 41224684 -161103663 + L1MA9 LINE L1 5223 5341 -971 3347 88 36 28 chr4 41224684 41225031 -161103316 - L1MA4A LINE L1 -5 6298 5944 2052 43 0 0 chr4 41225031 41225263 -161103084 - AluY SINE Alu -16 295 64 3347 88 36 28 chr4 41225263 41225416 -161102931 - L1MA4A LINE L1 -359 5944 5794 5754 116 61 19 chr4 41225416 41225878 -161102469 + L1MA4A LINE L1 5341 5782 -530 2662 46 0 0 chr4 41225878 41226185 -161102162 + AluY SINE Alu 1 307 -4 5754 116 61 19 chr4 41226185 41226657 -161101690 + L1MA9 LINE L1 5782 6312 0 286 317 29 29 chr4 41226708 41226812 -161101535 + MIR SINE MIR 46 149 -113 258 277 23 39 chr4 41227216 41227346 -161101001 + L1M LINE L1 5254 5381 -2427 552 286 17 6 chr4 41227921 41228099 -161100248 - L1MC4a LINE L1 -1955 5853 5674 1626 160 88 0 chr4 41228205 41228468 -161099879 - AluJb SINE Alu -26 286 1 310 301 112 36 chr4 41228478 41228728 -161099619 - L1MCa LINE L1 -853 1637 1182 891 200 54 42 chr4 41228738 41228978 -161099369 - L1ME3 LINE L1 -2 6160 5918 306 283 49 87 chr4 41229054 41229137 -161099210 - L1MCa LINE L1 -5046 1073 988 2197 94 7 10 chr4 41229137 41229436 -161098911 - AluSc SINE Alu -11 298 1 306 283 49 87 chr4 41229436 41229858 -161098489 - L1MCa LINE L1 -5131 988 587 25 0 0 0 chr4 41230045 41230070 -161098277 + AT_rich Low_complexity Low_complexity 1 25 0 338 304 80 47 chr4 41230100 41230171 -161098176 + L1M4 LINE L1 4633 4700 -1446 1793 242 79 30 chr4 41230171 41230662 -161097685 + LTR40a LTR ERVL 1 515 -4 338 304 80 47 chr4 41230662 41230942 -161097405 + L1M4 LINE L1 4700 4969 -1177 1754 156 13 20 chr4 41230942 41231243 -161097104 + AluJo SINE Alu 1 299 -13 338 304 80 47 chr4 41231243 41231489 -161096858 + L1M4 LINE L1 4969 5251 -895 2584 68 0 0 chr4 41231796 41232106 -161096241 + AluY SINE Alu 1 310 -1 2089 123 0 3 chr4 41232316 41232608 -161095739 - AluJb SINE Alu -21 291 1 2281 97 0 3 chr4 41232687 41232987 -161095360 + AluSx SINE Alu 1 299 -13 2199 93 0 48 chr4 41233333 41233645 -161094702 - AluSq SINE Alu -16 297 1 516 179 20 169 chr4 41233819 41233942 -161094405 - MIR SINE MIR -22 240 157 2474 47 7 0 chr4 41233942 41234238 -161094109 + AluY SINE Alu 1 298 -13 516 179 20 169 chr4 41234238 41234315 -161094032 - MIR SINE MIR -105 157 70 1368 214 39 29 chr4 41234485 41234869 -161093478 + Charlie4a DNA MER1_type 1 388 -120 278 179 71 36 chr4 41235021 41235105 -161093242 - Charlie4 DNA MER1_type -120 1841 1755 * 542 234 0 0 chr4 41235102 41235213 -161093134 + Charlie4 DNA MER1_type 1851 1961 0 1395 196 78 37 chr4 41235223 41235453 -161092894 + MER58B DNA MER1_type 4 252 -2168 2451 83 0 0 chr4 41235453 41235755 -161092592 - AluSg SINE Alu -8 302 1 1395 196 78 37 chr4 41235755 41235846 -161092501 + MER58B DNA MER1_type 252 338 -3 213 121 0 0 chr4 41236786 41236819 -161091528 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 470 207 0 24 chr4 41238052 41238221 -161090126 + (CTATT)n Simple_repeat Simple_repeat 4 168 0 470 207 0 24 chr4 41238232 41238401 -161089946 + (CTATT)n Simple_repeat Simple_repeat 4 168 0 225 140 0 35 chr4 41238548 41238605 -161089742 + (CTATT)n Simple_repeat Simple_repeat 4 58 0 1545 249 59 27 chr4 41238810 41239024 -161089323 - L2 LINE L2 0 3313 3107 360 0 0 0 chr4 41239024 41239064 -161089283 + (TG)n Simple_repeat Simple_repeat 2 41 0 1545 249 59 27 chr4 41239064 41239547 -161088800 - L2 LINE L2 -206 3107 2601 1788 168 7 7 chr4 41240274 41240679 -161087668 + AluJo SINE Alu 3 407 0 1486 177 21 28 chr4 41240729 41241017 -161087330 - AluJb SINE Alu -26 286 1 365 310 13 19 chr4 41241058 41241216 -161087131 - MER117 DNA MER1_type 0 197 41 274 359 155 0 chr4 41243789 41243970 -161084377 - MIR SINE MIR -41 221 13 21 0 0 0 chr4 41244606 41244627 -161083720 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 41244841 41244865 -161083482 + GC_rich Low_complexity Low_complexity 1 24 0 357 82 0 0 chr4 41245234 41245283 -161083064 + (TCC)n Simple_repeat Simple_repeat 2 50 0 1016 154 0 12 chr4 41246608 41246770 -161081577 + FRAM SINE Alu 1 155 -21 1731 115 4 32 chr4 41247878 41248131 -161080216 + AluSx SINE Alu 1 246 -66 2284 92 3 0 chr4 41248333 41248628 -161079719 - AluSg SINE Alu -14 296 1 486 212 20 0 chr4 41248948 41249047 -161079300 + MIR SINE MIR 162 262 0 613 184 9 18 chr4 41249394 41249508 -161078839 + MIR SINE MIR 7 119 -143 1964 132 0 0 chr4 41249775 41250048 -161078299 + AluSx SINE Alu 13 285 -27 212 330 78 39 chr4 41250880 41250983 -161077364 - MIR3 SINE MIR -18 190 84 477 259 123 25 chr4 41251020 41251182 -161077165 + MIR3 SINE MIR 25 202 -6 496 145 0 36 chr4 41251544 41251627 -161076720 + MADE1 DNA Mariner 1 80 0 2002 171 83 43 chr4 41252717 41253161 -161075186 + LTR40b LTR ERVL 1 462 0 205 323 97 38 chr4 41253285 41253471 -161074876 - L2 LINE L2 -464 2850 2654 260 335 47 66 chr4 41253579 41253791 -161074556 - L2 LINE L2 -896 2418 2211 232 345 112 0 chr4 41253856 41253972 -161074375 + MIR SINE MIR 89 217 -45 247 341 158 31 chr4 41254084 41254180 -161074167 - L2 LINE L2 -1202 2112 2029 2511 42 0 3 chr4 41254180 41254487 -161073860 + AluY SINE Alu 1 306 -5 247 341 158 31 chr4 41254487 41254771 -161073576 - L2 LINE L2 -1285 2029 1684 461 288 25 0 chr4 41254810 41254928 -161073419 - L2 LINE L2 -2 3311 3191 2382 105 0 0 chr4 41255126 41255431 -161072916 + AluSx SINE Alu 1 305 -7 2230 133 0 0 chr4 41255484 41255792 -161072555 - AluSx SINE Alu -4 308 1 21 57 0 0 chr4 41256118 41256153 -161072194 + AT_rich Low_complexity Low_complexity 1 35 0 567 228 168 0 chr4 41257288 41257437 -161070910 - MER5A DNA MER1_type -7 182 9 642 297 70 31 chr4 41257513 41258124 -161070223 - Charlie7 DNA MER1_type -1930 682 7 467 293 122 0 chr4 41258482 41258629 -161069718 + MIR SINE MIR 35 199 -63 8884 106 25 29 chr4 41259664 41260632 -161067715 - HSMAR2 DNA Mariner -1 1301 338 2111 130 0 0 chr4 41260632 41260916 -161067431 - AluSx SINE Alu -28 284 1 8884 106 25 29 chr4 41260916 41261253 -161067094 - HSMAR2 DNA Mariner -964 338 1 2502 178 68 7 chr4 41261310 41261854 -161066493 - Charlie1 DNA MER1_type -7 2754 2178 1091 116 7 0 chr4 41261855 41262002 -161066345 - AluSg/x SINE Alu -17 293 146 1910 127 18 3 chr4 41262691 41262975 -161065372 - AluSx SINE Alu -24 288 1 22 0 0 0 chr4 41264644 41264666 -161063681 + AT_rich Low_complexity Low_complexity 1 22 0 1214 181 27 8 chr4 41264752 41265012 -161063335 + MER33 DNA MER1_type 6 270 -54 2734 101 32 10 chr4 41265012 41265417 -161062930 + L1MA3 LINE L1 5892 6305 0 28 0 0 0 chr4 41265423 41265451 -161062896 + AT_rich Low_complexity Low_complexity 1 28 0 285 189 0 0 chr4 41265451 41265504 -161062843 + MER33 DNA MER1_type 297 349 -14 180 0 0 0 chr4 41265600 41265620 -161062727 + (T)n Simple_repeat Simple_repeat 1 20 0 326 298 85 14 chr4 41266312 41266453 -161061894 + L3 LINE CR1 1214 1364 -213 283 381 25 5 chr4 41266540 41266737 -161061610 - L3 LINE CR1 -108 1469 1269 241 322 88 38 chr4 41266908 41267009 -161061338 - L2 LINE L2 -463 2851 2757 1654 219 16 30 chr4 41267009 41267379 -161060968 + MLT1A1 LTR MaLR 1 365 0 241 322 88 38 chr4 41267379 41267516 -161060831 - L2 LINE L2 -557 2757 2601 2369 105 0 0 chr4 41267782 41268087 -161060260 + AluSp SINE Alu 1 305 -8 366 332 123 23 chr4 41268176 41268396 -161059951 + L2 LINE L2 3031 3272 0 21 0 0 0 chr4 41268417 41268438 -161059909 + AT_rich Low_complexity Low_complexity 1 21 0 2939 66 0 43 chr4 41268876 41269077 -161059270 + L1PB1 LINE L1 5776 5953 -198 2211 126 0 0 chr4 41269077 41269378 -161058969 + AluSx SINE Alu 1 301 -11 2939 66 0 43 chr4 41269378 41269569 -161058778 + L1PB1 LINE L1 5953 6151 0 493 237 107 53 chr4 41269706 41269765 -161058582 - MER45A DNA AcHobo -1403 178 124 4757 44 9 2 chr4 41269765 41270316 -161058031 + L1PA5 LINE L1 5598 6152 -2 493 237 107 53 chr4 41270316 41270425 -161057922 - MER45A DNA AcHobo -1457 124 1 328 287 70 23 chr4 41270890 41271019 -161057328 + MLT1L LTR MaLR 47 181 -434 216 158 0 0 chr4 41271138 41271176 -161057171 + CT-rich Low_complexity Low_complexity 2 39 0 244 238 95 0 chr4 41271382 41271466 -161056881 + MLT1L LTR MaLR 524 615 0 207 69 0 0 chr4 41271798 41271827 -161056520 + (TG)n Simple_repeat Simple_repeat 2 30 0 1457 160 45 11 chr4 41272098 41272385 -161055962 - MER33 DNA MER1_type -22 302 6 375 202 65 40 chr4 41272540 41272664 -161055683 - MER103 DNA DNA -3 163 37 2494 11 0 0 chr4 41273062 41273334 -161055013 - AluYa5 SINE Alu -1 310 39 25 31 0 0 chr4 41274399 41274431 -161053916 + AT_rich Low_complexity Low_complexity 1 32 0 289 287 119 10 chr4 41275836 41275937 -161052410 - MIR3 SINE MIR -9 199 88 2333 113 3 0 chr4 41277679 41277990 -161050357 - AluSx SINE Alu 0 312 1 42980 59 4 3 chr4 41278245 41280379 -161047968 + L1P2 LINE L1 8 2139 -4016 2403 83 0 7 chr4 41280379 41280681 -161047666 + AluY SINE Alu 1 300 -11 42980 59 4 3 chr4 41280681 41284325 -161044022 + L1P2 LINE L1 2139 5787 -368 2112 134 7 0 chr4 41284520 41284819 -161043528 - AluSx SINE Alu -11 301 1 4624 152 35 29 chr4 41284868 41285709 -161042638 + L1MC1 LINE L1 5396 6241 -92 745 76 0 0 chr4 41285779 41285871 -161042476 + L1MC1 LINE L1 6240 6331 -2 2328 69 28 0 chr4 41285970 41286258 -161042089 + AluSc SINE Alu 4 299 -10 209 348 192 30 chr4 41287394 41287759 -161040588 + L2 LINE L2 2505 2928 -386 511 256 89 28 chr4 41287808 41287988 -161040359 + L2 LINE L2 3109 3299 -14 2143 122 0 0 chr4 41288135 41288429 -161039918 + AluSx SINE Alu 1 294 -18 2332 80 7 3 chr4 41289299 41289601 -161038746 + AluSp SINE Alu 1 303 -10 1883 153 0 3 chr4 41290201 41290489 -161037858 + AluSx SINE Alu 1 287 -25 13933 85 7 2 chr4 41291962 41293802 -161034545 - L1P LINE L1 -4290 1856 8 2333 113 3 0 chr4 41294057 41294368 -161033979 + AluSx SINE Alu 1 312 0 1546 145 8 0 chr4 41295045 41295294 -161033053 + L1MA5 LINE L1 6035 6285 -15 701 261 65 11 chr4 41295657 41295917 -161032430 + L1ME1 LINE L1 5619 5892 -272 2129 127 0 0 chr4 41295967 41296282 -161032065 - AluSx SINE Alu 0 315 1 997 159 48 48 chr4 41296290 41296497 -161031850 - AluJo SINE Alu -18 294 88 395 294 55 32 chr4 41296497 41296715 -161031632 + L1ME1 LINE L1 5901 6123 -43 239 200 0 0 chr4 41296753 41296798 -161031549 + MIR SINE MIR 213 257 -5 483 211 29 28 chr4 41296812 41296943 -161031404 - MIR SINE MIR -68 140 34 2380 151 28 47 chr4 41297137 41297169 -161031178 - L1MB7 LINE L1 -28 6156 6125 2087 117 3 7 chr4 41297169 41297467 -161030880 + AluSx SINE Alu 1 297 -15 2380 151 28 47 chr4 41297467 41297899 -161030448 - L1MB7 LINE L1 -59 6125 5701 509 310 124 44 chr4 41298347 41298505 -161029842 + LTR16C LTR ERVL 74 218 -273 1198 198 18 18 chr4 41298505 41298727 -161029620 - MER58A DNA MER1_type -1 223 2 509 310 124 44 chr4 41298727 41298955 -161029392 + LTR16C LTR ERVL 218 491 0 655 246 74 0 chr4 41299008 41299183 -161029164 + MIR SINE MIR 46 233 -29 1634 128 11 34 chr4 41299318 41299584 -161028763 - L1MC1 LINE L1 -9 6324 6065 2375 79 0 20 chr4 41299584 41299889 -161028458 - AluSq SINE Alu -14 299 1 622 236 55 6 chr4 41300042 41300224 -161028123 + L1MC5 LINE L1 7723 7913 -48 3453 78 2 2 chr4 41301195 41301620 -161026727 + L1PA10 LINE L1 5736 6160 -8 361 252 90 31 chr4 41302859 41303097 -161025250 - MLT1L LTR MaLR -78 537 205 269 250 60 24 chr4 41303292 41303376 -161024971 - MLT1L LTR MaLR -528 87 1 219 327 59 0 chr4 41303418 41303519 -161024828 - L2 LINE L2 -659 2655 2549 567 40 0 119 chr4 41303691 41303792 -161024555 - AluY SINE Alu 0 310 222 2169 157 6 23 chr4 41304147 41304497 -161023850 + MER2 DNA MER2_type 1 344 0 951 123 0 22 chr4 41304678 41304816 -161023531 + FLAM_C SINE Alu 1 135 -8 1499 146 70 35 chr4 41304856 41305143 -161023204 - AluSx SINE Alu -15 297 1 610 220 6 66 chr4 41305152 41305334 -161023013 + L2 LINE L2 3142 3312 -1 2094 118 27 0 chr4 41305489 41305785 -161022562 + AluSx SINE Alu 1 304 -8 1758 155 47 7 chr4 41306163 41306459 -161021888 + AluJo SINE Alu 2 309 -3 208 225 0 0 chr4 41306654 41306694 -161021653 + CT-rich Low_complexity Low_complexity 1 40 0 231 271 59 118 chr4 41307215 41307418 -161020929 + L2 LINE L2 2865 3055 -217 2431 158 47 26 chr4 41307965 41308390 -161019957 - Tigger2a DNA MER2_type 0 434 1 418 240 39 31 chr4 41308980 41309109 -161019238 - MIR SINE MIR -113 149 20 370 250 0 0 chr4 41310868 41310940 -161017407 + L2 LINE L2 3136 3207 -65 281 299 0 0 chr4 41311222 41311289 -161017058 + MIR SINE MIR 33 99 -163 211 175 0 0 chr4 41311410 41311450 -161016897 + L2 LINE L2 3274 3313 0 279 256 122 0 chr4 41311452 41311534 -161016813 + MIR3 SINE MIR 105 196 -12 1554 103 4 13 chr4 41311995 41312228 -161016119 - MSTA LTR MaLR -1 427 197 1751 123 0 16 chr4 41312236 41312489 -161015858 + AluSx SINE Alu 41 289 -23 22 56 0 0 chr4 41312571 41312607 -161015740 + AT_rich Low_complexity Low_complexity 1 36 0 402 266 112 43 chr4 41314229 41314533 -161013814 + L1ME4a LINE L1 5738 6062 -59 352 296 102 24 chr4 41314919 41315125 -161013222 - MIR SINE MIR -13 249 28 1251 94 16 11 chr4 41315809 41316000 -161012347 + L1PB2 LINE L1 5958 6149 -2 210 315 135 0 chr4 41318178 41318289 -161010058 + L2 LINE L2 3139 3264 -8 640 291 122 27 chr4 41318655 41319229 -161009118 + L2 LINE L2 2651 3290 -23 307 308 44 0 chr4 41320485 41320576 -161007771 + MIR SINE MIR 47 141 -121 241 222 37 0 chr4 41320680 41320734 -161007613 + MLT1I LTR MaLR 347 402 -7 236 286 87 24 chr4 41321072 41321198 -161007149 - MLT1K LTR MaLR -445 143 10 523 155 0 0 chr4 41321280 41321364 -161006983 - L1P LINE L1 -1390 4756 4673 247 298 67 10 chr4 41321366 41321470 -161006877 - MIR SINE MIR -66 142 33 8251 97 23 0 chr4 41322677 41323846 -161004501 + L1P LINE L1 3635 4830 -1316 1052 188 97 35 chr4 41323957 41324002 -161004345 - L1MCa LINE L1 -2967 3459 3418 351 0 0 0 chr4 41324002 41324041 -161004306 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1052 188 97 35 chr4 41324041 41324285 -161004062 - L1MCa LINE L1 -3008 3418 3144 2203 100 7 0 chr4 41324285 41324575 -161003772 + AluSp SINE Alu 1 292 -21 1052 188 97 35 chr4 41324575 41324624 -161003723 - L1MCa LINE L1 -3282 3144 3099 * 2048 184 29 40 chr4 41324620 41325214 -161003133 - L1MCa LINE L1 -3924 2683 2046 1498 177 21 6 chr4 41325430 41325855 -161002492 + L1 LINE L1 3429 3860 -3705 485 108 43 11 chr4 41325848 41325941 -161002406 - L1M1 LINE L1 -4007 3558 3463 * 6948 214 13 4 chr4 41325943 41327400 -161000947 + L1 LINE L1 5028 6497 -1068 325 278 27 32 chr4 41327524 41327711 -161000636 - AluY SINE Alu -28 273 88 329 214 71 0 chr4 41328553 41328637 -160999710 - MER58B DNA MER1_type -3 338 249 2389 87 0 13 chr4 41328644 41328953 -160999394 + AluSg SINE Alu 1 305 -5 294 214 0 71 chr4 41329107 41329191 -160999156 - MER58B DNA MER1_type -68 273 196 2196 112 16 3 chr4 41329259 41329563 -160998784 - AluSx SINE Alu -4 308 1 2010 121 14 3 chr4 41329625 41329942 -160998405 - AluSq SINE Alu 0 320 1 22 35 0 0 chr4 41330273 41330302 -160998045 + AT_rich Low_complexity Low_complexity 1 29 0 1092 128 0 7 chr4 41330373 41330522 -160997825 + AluSq/x SINE Alu 1 148 -165 184 274 62 106 chr4 41330537 41330562 -160997785 - MIR3 SINE MIR -20 188 163 2312 110 3 0 chr4 41330562 41330862 -160997485 + AluSx SINE Alu 1 301 -11 184 274 62 106 chr4 41330862 41331015 -160997332 - MIR3 SINE MIR -45 163 18 782 203 68 0 chr4 41331016 41331193 -160997154 - MER5A DNA MER1_type 0 189 1 1366 224 184 83 chr4 41331530 41331805 -160996542 - HAL1 LINE L1 -168 2339 2093 1282 177 55 65 chr4 41331805 41332115 -160996232 - AluJb SINE Alu -2 310 4 1366 224 184 83 chr4 41332115 41332965 -160995382 - HAL1 LINE L1 -414 2093 1101 1947 138 7 0 chr4 41333006 41333288 -160995059 - AluJb SINE Alu -28 284 1 456 212 20 0 chr4 41333608 41333707 -160994640 + MIR SINE MIR 162 262 0 572 184 9 18 chr4 41334054 41334168 -160994179 + MIR SINE MIR 7 119 -143 1986 132 0 0 chr4 41334435 41334708 -160993639 + AluSx SINE Alu 13 285 -27 182 330 78 39 chr4 41335539 41335642 -160992705 - MIR3 SINE MIR -18 190 84 385 261 130 25 chr4 41335679 41335840 -160992507 + MIR3 SINE MIR 25 202 -6 474 145 0 36 chr4 41336202 41336285 -160992062 + MADE1 DNA Mariner 1 80 0 1868 171 83 43 chr4 41337375 41337819 -160990528 + LTR40b LTR ERVL 1 462 0 196 322 55 71 chr4 41338266 41338449 -160989898 - L2 LINE L2 -924 2390 2211 207 336 125 0 chr4 41338519 41338623 -160989724 + MIR SINE MIR 94 210 -52 2449 48 0 10 chr4 41338836 41339145 -160989202 + AluY SINE Alu 1 306 -5 427 288 25 0 chr4 41339472 41339590 -160988757 - L2 LINE L2 -2 3311 3191 2181 96 7 7 chr4 41339788 41340080 -160988267 + AluSq SINE Alu 1 292 -21 1799 100 4 8 chr4 41340262 41340502 -160987845 + AluSg SINE Alu 49 287 -23 731 139 9 0 chr4 41340605 41340713 -160987634 - AluSg/x SINE Alu -11 298 190 1083 112 0 0 chr4 41340813 41340956 -160987391 + AluSg/x SINE Alu 160 302 -10 21 0 0 0 chr4 41341194 41341215 -160987132 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr4 41341346 41341369 -160986978 + (TG)n Simple_repeat Simple_repeat 2 24 0 1771 159 11 25 chr4 41341401 41341684 -160986663 + AluJo SINE Alu 11 289 -23 2260 101 3 7 chr4 41341796 41342093 -160986254 - AluSc SINE Alu -13 296 1 430 282 73 40 chr4 41342093 41342341 -160986006 + L2 LINE L2 3051 3306 -7 420 211 88 119 chr4 41344492 41344641 -160983706 - MIR SINE MIR -2 260 121 655 139 0 111 chr4 41344641 41344785 -160983562 + FLAM_A SINE Alu 1 128 -5 420 211 88 119 chr4 41344785 41344895 -160983452 - MIR SINE MIR -141 121 9 200 281 49 24 chr4 41344960 41345042 -160983305 - L3b LINE CR1 -197 1386 1303 677 190 61 37 chr4 41345459 41345622 -160982725 - MER5A DNA MER1_type -8 181 15 231 61 0 0 chr4 41345944 41345977 -160982370 + (CCCTG)n Simple_repeat Simple_repeat 3 35 0 222 384 20 0 chr4 41346263 41346414 -160981933 + L2 LINE L2 2934 3087 -185 2059 109 7 20 chr4 41346874 41347176 -160981171 + AluSc SINE Alu 1 298 -11 317 143 129 14 chr4 41347352 41347422 -160980925 - MADE1 DNA Mariner -2 78 1 307 319 76 0 chr4 41348104 41348248 -160980099 - L2 LINE L2 -5 3308 3154 777 246 0 6 chr4 41348576 41348747 -160979600 + FRAM SINE Alu 1 164 -12 1029 148 7 0 chr4 41349018 41349173 -160979174 + AluJb SINE Alu 136 291 -21 514 213 33 0 chr4 41349537 41349659 -160978688 + MER5B DNA MER1_type 53 178 0 302 298 16 0 chr4 41349671 41349792 -160978555 + MER5B DNA MER1_type 3 125 -53 2847 71 5 14 chr4 41350599 41350966 -160977381 - THE1B LTR MaLR 0 364 1 751 115 0 0 chr4 41351709 41351813 -160976534 + MLT1C LTR MaLR 1 104 -363 1467 155 21 4 chr4 41351813 41352052 -160976295 - Tigger5 DNA MER2_type 0 2323 2081 365 241 0 13 chr4 41352046 41352125 -160976222 - Tigger5 DNA MER2_type -2245 78 1 * 1979 159 13 27 chr4 41352125 41352495 -160975852 + MLT1C LTR MaLR 103 467 0 1655 186 13 19 chr4 41353357 41353669 -160974678 - AluJb SINE Alu 0 312 3 237 259 207 46 chr4 41354162 41354336 -160974011 + MIR SINE MIR 47 248 -14 4254 143 106 1 chr4 41354922 41356276 -160972071 - pTR5 LTR ERV1 0 2606 1524 25 0 0 0 chr4 41356302 41356327 -160972020 + AT_rich Low_complexity Low_complexity 1 25 0 2301 116 0 3 chr4 41356369 41356680 -160971667 - AluSg SINE Alu 0 310 1 261 351 93 0 chr4 41357691 41357842 -160970505 + MIR SINE MIR 97 261 -1 562 311 52 4 chr4 41358267 41358515 -160969832 - MIR SINE MIR 0 262 3 705 224 23 0 chr4 41359113 41359287 -160969060 - MER96B DNA MER1_type? -239 178 1 281 359 39 0 chr4 41360478 41360581 -160967766 + L2 LINE L2 3121 3227 -45 183 200 0 0 chr4 41360746 41360781 -160967566 - MIR SINE MIR -55 153 119 2508 64 0 10 chr4 41361756 41362093 -160966254 - AluY SINE Alu 0 334 1 842 224 0 0 chr4 41362095 41362256 -160966091 - FRAM SINE Alu -5 161 1 24 0 0 0 chr4 41362623 41362647 -160965700 + AT_rich Low_complexity Low_complexity 1 24 0 1567 174 64 7 chr4 41362656 41362937 -160965410 + AluJb SINE Alu 1 297 -15 324 229 48 12 chr4 41362974 41363057 -160965290 - MIR SINE MIR -72 190 105 446 157 90 60 chr4 41363264 41363398 -160964949 - MER117 DNA MER1_type -27 170 33 342 0 0 0 chr4 41363487 41363525 -160964822 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 459 286 141 5 chr4 41364613 41364812 -160963535 + MIR SINE MIR 27 252 -10 1401 244 48 11 chr4 41364884 41365319 -160963028 + L1 LINE L1 3223 3673 -2473 848 224 58 42 chr4 41365331 41365590 -160962757 + L2 LINE L2 3049 3311 -2 344 282 147 48 chr4 41365702 41365961 -160962386 - L2 LINE L2 -1262 2052 1735 2062 92 0 22 chr4 41365961 41366233 -160962114 + AluY SINE Alu 1 266 -45 344 282 147 48 chr4 41366233 41366388 -160961959 - L2 LINE L2 -1579 1735 1597 2079 87 80 0 chr4 41366928 41367215 -160961132 - AluSg SINE Alu 0 310 1 420 181 143 29 chr4 41368510 41368615 -160959732 - L2 LINE L2 0 3313 3197 252 154 0 0 chr4 41369032 41369084 -160959263 + (TG)n Simple_repeat Simple_repeat 2 53 0 190 317 129 10 chr4 41369170 41369271 -160959076 + MIR SINE MIR 20 132 -130 554 294 47 19 chr4 41369297 41369511 -160958836 - MIR SINE MIR -22 240 21 625 207 41 0 chr4 41369595 41369716 -160958631 - MLT1J LTR MaLR -133 378 253 22 0 0 0 chr4 41369926 41369948 -160958399 + AT_rich Low_complexity Low_complexity 1 22 0 689 243 102 35 chr4 41369963 41370189 -160958158 - MLT1J LTR MaLR -270 241 1 1969 183 46 3 chr4 41371065 41371415 -160956932 + MLT1A1 LTR MaLR 1 365 0 274 274 210 6 chr4 41372640 41372797 -160955550 - MIR3 SINE MIR 0 208 20 569 312 98 0 chr4 41373047 41373262 -160955085 + MIR SINE MIR 8 243 -19 22 35 0 0 chr4 41373431 41373460 -160954887 + AT_rich Low_complexity Low_complexity 1 29 0 2023 150 0 3 chr4 41373512 41373819 -160954528 + AluSx SINE Alu 1 306 -6 770 246 103 88 chr4 41373829 41374227 -160954120 - MLT1J2 LTR MaLR -15 431 28 464 243 0 0 chr4 41374333 41374436 -160953911 - L2 LINE L2 0 3313 3211 393 246 31 23 chr4 41374477 41374607 -160953740 + MER69 DNA AcHobo 2395 2525 -1 390 206 152 49 chr4 41374608 41374792 -160953555 - L2 LINE L2 -97 3216 3014 334 300 43 21 chr4 41374805 41374945 -160953402 - L1ME LINE L1 -381 5740 5598 2062 145 10 0 chr4 41375223 41375526 -160952821 + AluSg SINE Alu 1 306 -4 405 293 21 21 chr4 41375526 41375666 -160952681 - MIR3 SINE MIR -33 175 36 186 192 0 39 chr4 41375789 41375841 -160952506 + MIR SINE MIR 174 223 -39 895 58 69 0 chr4 41376648 41376922 -160951425 + (TAGA)n Simple_repeat Simple_repeat 3 294 0 257 328 8 47 chr4 41377336 41377464 -160950883 - L2 LINE L2 -1 3271 3149 731 281 13 91 chr4 41377694 41378045 -160950302 - MLT1I LTR MaLR -1 408 102 263 372 107 30 chr4 41378102 41378328 -160950019 - L2 LINE L2 -385 2929 2722 2420 100 0 0 chr4 41378328 41378637 -160949710 + AluSx SINE Alu 1 309 -3 263 372 107 30 chr4 41378637 41378970 -160949377 - L2 LINE L2 -592 2722 2319 1877 198 117 5 chr4 41378970 41379390 -160948957 + MLT1C LTR MaLR 1 467 0 263 372 107 30 chr4 41379390 41379428 -160948919 - L2 LINE L2 -995 2319 2285 510 312 89 61 chr4 41379678 41380139 -160948208 - L2 LINE L2 -8 3305 2832 234 0 0 0 chr4 41380139 41380165 -160948182 + (TG)n Simple_repeat Simple_repeat 2 27 0 328 281 70 9 chr4 41380179 41380293 -160948054 - L2 LINE L2 -638 2676 2556 2425 174 21 2 chr4 41380962 41381386 -160946961 + MSTB1 LTR MaLR 1 432 0 241 292 0 52 chr4 41382385 41382481 -160945866 + L1ME4a LINE L1 5955 6045 -76 189 0 0 0 chr4 41383086 41383107 -160945240 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 1305 194 69 22 chr4 41384501 41384584 -160943763 - MER33 DNA MER1_type -2261 324 246 2260 116 0 0 chr4 41384584 41384886 -160943461 + AluSc SINE Alu 1 302 -7 1305 194 69 22 chr4 41384886 41384908 -160943439 - MER33 DNA MER1_type -2339 246 226 941 252 132 22 chr4 41384908 41385265 -160943082 + MSTD LTR MaLR 1 396 0 1305 194 69 22 chr4 41385265 41385480 -160942867 - MER33 DNA MER1_type -2359 226 1 2288 184 44 0 chr4 41385631 41386039 -160942308 + MSTB LTR MaLR 1 426 0 2145 124 24 37 chr4 41386896 41387276 -160941071 + THE1C LTR MaLR 1 375 0 384 285 175 26 chr4 41388699 41389138 -160939209 - L2 LINE L2 -1 3312 2799 339 311 56 67 chr4 41389141 41389208 -160939139 + MLT1J LTR MaLR 5 71 -379 2412 72 0 20 chr4 41389208 41389514 -160938833 - AluSx SINE Alu -12 300 1 339 311 56 67 chr4 41389514 41389659 -160938688 + MLT1J LTR MaLR 71 175 -275 851 170 79 0 chr4 41389794 41389959 -160938388 + MER5A DNA MER1_type 12 189 0 1137 159 18 49 chr4 41389967 41390193 -160938154 - MER20 DNA MER1_type 0 219 1 313 243 40 81 chr4 41390203 41390351 -160937996 + MLT1J LTR MaLR 330 471 -40 418 255 59 39 chr4 41390390 41390543 -160937804 - L2 LINE L2 -511 2803 2648 350 234 175 36 chr4 41390547 41390684 -160937663 - L2 LINE L2 -809 2505 2350 288 271 0 24 chr4 41390777 41390862 -160937485 + L1MC4a LINE L1 5736 5818 -1990 2041 104 73 3 chr4 41390869 41391157 -160937190 + AluSc SINE Alu 1 308 -1 358 252 206 37 chr4 41391197 41391411 -160936936 + MIR SINE MIR 13 262 0 259 260 100 10 chr4 41391420 41391520 -160936827 + L1MC4a LINE L1 5829 5937 -1871 234 229 0 33 chr4 41392530 41392591 -160935756 + MIR SINE MIR 183 241 -21 266 288 127 67 chr4 41392822 41392883 -160935464 - L3 LINE CR1 -685 892 836 795 211 50 6 chr4 41392883 41393063 -160935284 - MER5A DNA MER1_type -1 188 1 266 288 127 67 chr4 41393063 41393316 -160935031 - L3 LINE CR1 -741 836 559 481 299 23 11 chr4 41393316 41393490 -160934857 - MER5B DNA MER1_type 0 178 3 342 263 66 29 chr4 41393588 41393725 -160934622 - L3 LINE CR1 -1102 475 334 229 283 150 0 chr4 41393811 41393931 -160934416 - MIR SINE MIR 0 262 125 1185 188 207 39 chr4 41395012 41395321 -160933026 - MLT1A1 LTR MaLR -4 361 1 248 235 134 84 chr4 41395531 41395650 -160932697 + L2 LINE L2 3155 3279 -34 904 248 178 9 chr4 41396636 41397079 -160931268 + Charlie7 DNA MER1_type 1803 2320 -292 1148 257 96 20 chr4 41398368 41398883 -160929464 + MLT2E LTR ERVL 7 608 -20 21 36 0 0 chr4 41400612 41400640 -160927707 + AT_rich Low_complexity Low_complexity 1 28 0 249 275 43 0 chr4 41401923 41401992 -160926355 + MLT1I LTR MaLR 330 401 -8 624 156 0 0 chr4 41402715 41402824 -160925523 + (CA)n Simple_repeat Simple_repeat 2 110 0 33602 46 5 3 chr4 41404694 41405587 -160922760 + L1PA5 LINE L1 1251 2141 -4013 2439 80 0 7 chr4 41405587 41405889 -160922458 + AluY SINE Alu 1 300 -11 33602 46 5 3 chr4 41405889 41409890 -160918457 + L1PA5 LINE L1 2141 6149 -5 684 226 0 0 chr4 41410202 41410326 -160918021 - FLAM_A SINE Alu -8 125 2 231 214 233 48 chr4 41411418 41411521 -160916826 + LTR67 LTR ERVL 429 550 -7 418 264 33 8 chr4 41411554 41411675 -160916672 - L2 LINE L2 0 3313 3190 469 301 36 107 chr4 41411913 41412019 -160916328 - L2 LINE L2 -38 3234 3122 1468 134 157 23 chr4 41412019 41412318 -160916029 + MER44D DNA MER2_type 1 609 0 469 301 36 107 chr4 41412318 41412659 -160915688 - L2 LINE L2 -150 3122 2819 532 323 164 15 chr4 41412761 41413229 -160915118 - L2 LINE L2 -611 2703 2166 1446 235 10 35 chr4 41413274 41413642 -160914705 + MLT1I LTR MaLR 48 409 0 351 0 0 0 chr4 41414951 41414990 -160913357 + (TG)n Simple_repeat Simple_repeat 2 40 0 283 222 17 28 chr4 41415054 41415230 -160913117 + (TATATG)n Simple_repeat Simple_repeat 1 174 0 2082 122 30 7 chr4 41415343 41415647 -160912700 - AluSx SINE Alu -1 311 1 358 264 179 0 chr4 41415713 41415853 -160912494 + MIR3 SINE MIR 36 200 -8 2357 87 0 0 chr4 41416647 41416936 -160911411 + AluSg SINE Alu 1 289 -21 1900 136 21 14 chr4 41417026 41417343 -160911004 + AluSx SINE Alu 1 288 -24 1496 207 7 17 chr4 41417796 41418086 -160910261 + AluJo SINE Alu 1 287 -25 1019 262 119 12 chr4 41418137 41418473 -160909874 - L1ME3A LINE L1 -235 5935 5564 201 301 27 0 chr4 41418486 41418559 -160909788 + CT-rich Low_complexity Low_complexity 1 75 0 257 250 12 24 chr4 41418866 41418950 -160909397 + MER5A DNA MER1_type 1 83 -106 734 203 31 12 chr4 41420231 41420394 -160907953 - MIR SINE MIR -28 234 69 984 139 0 26 chr4 41420498 41420649 -160907698 - FAM SINE Alu -21 164 18 2116 139 0 7 chr4 41421272 41421582 -160906765 - AluSx SINE Alu -4 308 1 238 309 94 54 chr4 41421914 41422063 -160906284 + MER91A DNA MER1_type 25 179 -17 25 31 0 0 chr4 41422571 41422603 -160905744 + AT_rich Low_complexity Low_complexity 1 32 0 239 194 43 32 chr4 41422608 41422701 -160905646 + L1ME4a LINE L1 6006 6099 -22 687 92 4 5 chr4 41422707 41422968 -160905379 - AluSc SINE Alu -4 305 12 378 207 80 0 chr4 41423370 41423474 -160904873 + MIR SINE MIR 85 199 -63 1802 168 14 1 chr4 41423478 41423797 -160904550 + L1MB3 LINE L1 5593 5918 -265 7928 43 4 8 chr4 41423798 41424741 -160903606 + LTR13 LTR ERVK 69 1007 0 2227 103 0 3 chr4 41424825 41425116 -160903231 + AluSx SINE Alu 1 290 -22 1903 151 0 27 chr4 41425145 41425444 -160902903 + AluJb SINE Alu 1 291 -21 481 228 158 25 chr4 41425687 41425845 -160902502 + MER5A DNA MER1_type 10 188 -1 2478 73 13 0 chr4 41426755 41427058 -160901289 - AluSp SINE Alu -6 307 1 2183 123 7 0 chr4 41427181 41427481 -160900866 - AluSp SINE Alu -11 302 1 262 277 0 0 chr4 41427481 41427546 -160900801 + MER5B DNA MER1_type 114 178 0 2169 136 19 30 chr4 41428068 41428436 -160899911 + THE1B LTR MaLR 1 364 0 182 254 0 0 chr4 41429179 41429234 -160899113 - L2 LINE L2 -293 2979 2925 2586 177 36 10 chr4 41429437 41429933 -160898414 + L1MB7 LINE L1 5657 6165 -19 2009 132 7 16 chr4 41430034 41430337 -160898010 + AluSq SINE Alu 1 300 -13 183 129 0 0 chr4 41430390 41430421 -160897926 + (TAG)n Simple_repeat Simple_repeat 3 33 0 2473 93 0 0 chr4 41432156 41432467 -160895880 - AluSx SINE Alu -1 311 1 1233 73 101 11 chr4 41432869 41433048 -160895299 + L1PA6 LINE L1 5958 6152 -2 346 264 36 9 chr4 41433475 41433585 -160894762 + MIR3 SINE MIR 68 180 -28 2060 125 14 0 chr4 41433633 41433948 -160894399 + AluSx SINE Alu 1 319 0 298 215 76 13 chr4 41434544 41434623 -160893724 - MIR SINE MIR -102 160 77 220 208 19 0 chr4 41434889 41434942 -160893405 + GA-rich Low_complexity Low_complexity 3 56 0 271 136 0 30 chr4 41435801 41435867 -160892480 + (GGGGA)n Simple_repeat Simple_repeat 5 68 0 1653 234 79 16 chr4 41436639 41437139 -160891208 - MLT1F1 LTR MaLR -1 566 25 8280 44 11 4 chr4 41437141 41438141 -160890206 + LTR13 LTR ERVK 1 1007 0 2227 103 0 3 chr4 41438225 41438516 -160889831 + AluSx SINE Alu 1 290 -22 1903 151 0 27 chr4 41438545 41438844 -160889503 + AluJb SINE Alu 1 291 -21 499 207 120 45 chr4 41439081 41439247 -160889100 + MER5A DNA MER1_type 4 188 -1 723 200 91 78 chr4 41440110 41440430 -160887917 + L1M4 LINE L1 5045 5368 -778 330 264 194 8 chr4 41440661 41440790 -160887557 + L2 LINE L2 3107 3259 -13 183 260 20 0 chr4 41441166 41441216 -160887131 + MIR3 SINE MIR 149 199 -9 2581 63 0 0 chr4 41441260 41441562 -160886785 - AluSq SINE Alu -11 302 1 495 209 11 0 chr4 41441686 41441777 -160886570 + MLT1A1 LTR MaLR 274 365 0 450 231 0 0 chr4 41443808 41443925 -160884422 + (CA)n Simple_repeat Simple_repeat 1 117 0 467 221 133 65 chr4 41443934 41444005 -160884342 - MIR SINE MIR -10 252 187 2700 49 0 0 chr4 41444005 41444311 -160884036 - AluY SINE Alu -5 306 1 467 221 133 65 chr4 41444311 41444443 -160883904 - MIR SINE MIR -75 187 36 232 98 0 0 chr4 41444458 41444499 -160883848 + MADE1 DNA Mariner 40 80 0 210 233 17 50 chr4 41444752 41444812 -160883535 + L2 LINE L2 3246 3303 -10 439 298 21 0 chr4 41445555 41445746 -160882601 - L1ME LINE L1 -317 5804 5610 2149 112 6 13 chr4 41445792 41446104 -160882243 - AluSx SINE Alu -2 310 1 602 263 86 17 chr4 41446813 41447045 -160881302 + LTR33 LTR ERVL 21 268 -253 2205 181 29 84 chr4 41447111 41447697 -160880650 + MLT2B3 LTR ERVL 1 554 0 309 240 60 20 chr4 41447716 41447816 -160880531 + LTR33 LTR ERVL 410 513 -8 426 217 0 11 chr4 41448047 41448139 -160880208 - L2 LINE L2 0 3313 3223 1941 157 0 10 chr4 41448374 41448680 -160879667 - AluJo SINE Alu -9 303 1 2169 114 3 3 chr4 41449403 41449701 -160878646 + AluSg SINE Alu 1 298 -12 2125 141 0 0 chr4 41450704 41451010 -160877337 + AluSx SINE Alu 1 306 -6 480 237 69 91 chr4 41451010 41451182 -160877165 + Charlie8 DNA MER1_type 48 215 -115 2411 88 0 7 chr4 41451182 41451488 -160876859 + AluSg1 SINE Alu 1 304 -5 480 237 69 91 chr4 41451488 41451547 -160876800 + Charlie8 DNA MER1_type 215 274 -56 197 311 33 44 chr4 41451554 41451644 -160876703 - MIR SINE MIR -90 118 30 1512 145 4 0 chr4 41452531 41452765 -160875582 - AluSg/x SINE Alu -7 303 69 331 258 98 89 chr4 41453202 41453427 -160874920 - L1M4 LINE L1 -1978 4168 3942 1743 177 128 41 chr4 41453428 41453524 -160874823 - LOR1b LTR ERV1 0 461 375 2103 108 47 0 chr4 41453524 41453821 -160874526 - AluY SINE Alu 0 311 1 1743 177 128 41 chr4 41453821 41454137 -160874210 - LOR1b LTR ERV1 -86 375 13 2196 130 0 0 chr4 41454240 41454547 -160873800 - AluSx SINE Alu -5 307 1 399 253 41 36 chr4 41454552 41454746 -160873601 - L1M4 LINE L1 -2365 3781 3587 302 256 87 99 chr4 41454765 41455077 -160873270 - L1M4 LINE L1 -2629 3517 3210 829 183 16 52 chr4 41455077 41455268 -160873079 - AluJo SINE Alu -3 309 126 2525 63 0 7 chr4 41455351 41455653 -160872694 - AluY SINE Alu -11 300 1 397 279 26 19 chr4 41455887 41456041 -160872306 - L1MEd LINE L1 -5961 158 4 2159 115 7 10 chr4 41456798 41457103 -160871244 - AluSg SINE Alu -6 304 1 815 297 81 44 chr4 41457106 41457624 -160870723 - L1MC4a LINE L1 -303 5818 5352 23 54 0 0 chr4 41457730 41457767 -160870580 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 41457927 41457949 -160870398 + AT_rich Low_complexity Low_complexity 1 22 0 260 276 35 0 chr4 41458317 41458404 -160869943 + MIR SINE MIR 3 92 -170 787 142 12 31 chr4 41458441 41458603 -160869744 - THE1C LTR MaLR -21 354 196 243 0 0 0 chr4 41458724 41458751 -160869596 + (T)n Simple_repeat Simple_repeat 1 27 0 382 238 12 0 chr4 41458877 41458957 -160869390 + MER5A DNA MER1_type 9 89 -100 291 284 32 0 chr4 41459557 41459652 -160868695 - L2 LINE L2 -24 3289 3192 567 96 64 8 chr4 41460115 41460240 -160868107 + CT-rich Low_complexity Low_complexity 6 137 0 2078 133 0 27 chr4 41460397 41460698 -160867649 - AluSx SINE Alu -19 293 1 210 368 21 21 chr4 41460837 41460981 -160867366 + MIR3 SINE MIR 42 185 -23 377 295 168 6 chr4 41461318 41461491 -160866856 + MIR SINE MIR 48 248 -14 2145 111 3 7 chr4 41461502 41461829 -160866518 + AluSx SINE Alu 1 312 0 286 300 41 59 chr4 41462160 41462330 -160866017 - MIR SINE MIR -65 197 31 230 265 0 0 chr4 41462547 41462596 -160865751 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 21 0 0 0 chr4 41462941 41462962 -160865385 + AT_rich Low_complexity Low_complexity 1 21 0 33 43 0 0 chr4 41464124 41464171 -160864176 + AT_rich Low_complexity Low_complexity 1 47 0 505 282 56 45 chr4 41464283 41464638 -160863709 - L1ME4a LINE L1 -91 6030 5672 914 124 8 0 chr4 41464871 41465000 -160863347 - FLAM_C SINE Alu -3 130 1 272 286 114 29 chr4 41466115 41466220 -160862127 - MIR3 SINE MIR -23 185 72 458 258 30 15 chr4 41467533 41467665 -160860682 - MER5A DNA MER1_type 0 189 56 25 0 0 0 chr4 41468976 41469001 -160859346 + AT_rich Low_complexity Low_complexity 1 25 0 1860 280 135 31 chr4 41469078 41469749 -160858598 + L2 LINE L2 1923 2523 -790 1853 69 53 4 chr4 41469749 41469996 -160858351 - AluY SINE Alu -15 296 38 1860 280 135 31 chr4 41469996 41470571 -160857776 + L2 LINE L2 2523 3301 -12 2099 212 54 17 chr4 41470633 41471152 -160857195 + MLT1F LTR MaLR 3 540 -2 238 125 214 0 chr4 41471169 41471225 -160857122 + MLT1F-int LTR MaLR 2 69 -1302 273 260 185 34 chr4 41472583 41472662 -160855685 + MER5A DNA MER1_type 22 88 -101 2703 45 0 3 chr4 41472662 41472971 -160855376 - AluY SINE Alu -3 308 1 273 260 185 34 chr4 41472971 41473037 -160855310 + MER5A DNA MER1_type 88 189 0 2386 156 68 29 chr4 41473260 41473746 -160854601 - MLT1D LTR MaLR 0 505 1 538 232 0 0 chr4 41473889 41474001 -160854346 - MER5A DNA MER1_type -77 112 1 1328 227 108 58 chr4 41474278 41474647 -160853700 + MLT1C LTR MaLR 1 397 -70 2561 71 0 3 chr4 41474647 41474955 -160853392 - AluSx SINE Alu -5 307 1 1328 227 108 58 chr4 41474955 41475030 -160853317 + MLT1C LTR MaLR 397 467 0 1095 218 4 27 chr4 41475349 41475574 -160852773 - MER58A DNA MER1_type 0 224 5 455 193 43 64 chr4 41476588 41476711 -160851636 - MIR SINE MIR -57 205 82 1982 143 167 19 chr4 41476711 41476897 -160851450 - MSTA LTR MaLR -2 426 269 180 0 0 0 chr4 41476897 41476917 -160851430 + (GA)n Simple_repeat Simple_repeat 1 20 0 1982 143 167 19 chr4 41476917 41477101 -160851246 - MSTA LTR MaLR -159 269 1 455 193 43 64 chr4 41477101 41477173 -160851174 - MIR SINE MIR -180 82 10 1617 188 0 14 chr4 41477607 41477921 -160850426 + AluJo SINE Alu 1 310 0 1880 225 118 6 chr4 41477982 41478458 -160849889 + MLT1H LTR MaLR 2 530 -19 281 253 50 66 chr4 41478491 41478673 -160849674 + L1MC1 LINE L1 5639 5817 -304 2050 121 74 6 chr4 41478829 41479152 -160849195 + L1MC1 LINE L1 5989 6333 0 2249 120 3 0 chr4 41479456 41479757 -160848590 - AluSx SINE Alu -10 302 1 2463 144 18 39 chr4 41479792 41479942 -160848405 - MSTA LTR MaLR 0 428 276 2399 54 0 10 chr4 41479942 41480236 -160848111 - AluY SINE Alu -19 292 2 2463 144 18 39 chr4 41480236 41480522 -160847825 - MSTA LTR MaLR -152 276 1 360 0 0 0 chr4 41480662 41480702 -160847645 + (TG)n Simple_repeat Simple_repeat 2 41 0 1282 194 53 106 chr4 41480762 41481359 -160846988 + L1MC5 LINE L1 6501 7065 -896 404 203 0 13 chr4 41481367 41481446 -160846901 - MLT1D LTR MaLR -421 84 7 322 315 138 7 chr4 41482812 41482961 -160845386 + MIR SINE MIR 17 182 -68 310 250 68 0 chr4 41483687 41483775 -160844572 - MER103 DNA DNA -51 115 22 516 260 67 0 chr4 41483877 41484027 -160844320 + LTR33 LTR ERVL 3 162 -359 542 236 76 0 chr4 41484084 41484228 -160844119 + LTR33 LTR ERVL 277 431 -90 205 273 45 11 chr4 41486718 41486806 -160841541 - MIR SINE MIR -70 192 102 281 297 49 22 chr4 41486811 41486996 -160841351 + MIR SINE MIR 53 242 -20 921 279 85 41 chr4 41488246 41488800 -160839547 - L1ME4a LINE L1 -216 5905 5320 649 220 45 34 chr4 41488932 41489109 -160839238 + MER97c DNA MER1_type? 1 179 -911 356 283 151 13 chr4 41489339 41489498 -160838849 - MER5A DNA MER1_type 0 189 9 626 246 31 66 chr4 41490412 41490640 -160837707 + MER58A DNA MER1_type 1 220 -4 216 157 214 14 chr4 41490737 41490807 -160837540 + MIR SINE MIR 93 176 -86 2173 133 3 0 chr4 41490818 41491120 -160837227 + AluSx SINE Alu 1 303 -9 1888 163 54 9 chr4 41492193 41492525 -160835822 + MER7A DNA MER2_type 1 345 -1 321 287 23 0 chr4 41495771 41495858 -160832489 - L2 LINE L2 -5 3308 3220 261 0 0 0 chr4 41496781 41496810 -160831537 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 231 237 34 0 chr4 41500621 41500680 -160827667 - L2 LINE L2 -4 3268 3208 343 309 120 42 chr4 41501843 41502202 -160826145 - L2 LINE L2 -5 3308 2922 505 208 71 56 chr4 41502217 41502429 -160825918 + MIR SINE MIR 10 234 -28 2229 114 0 3 chr4 41503110 41503418 -160824929 + AluSq SINE Alu 1 307 -6 204 97 0 0 chr4 41504431 41504462 -160823885 + (TG)n Simple_repeat Simple_repeat 2 32 0 1279 198 81 0 chr4 41504476 41504774 -160823573 - MER33 DNA MER1_type 0 324 3 909 222 6 0 chr4 41505220 41505387 -160822960 + MER45A DNA AcHobo 1 168 -10 336 203 14 54 chr4 41506738 41506812 -160821535 + Charlie1 DNA MER1_type 1 71 -2690 1111 173 112 46 chr4 41506812 41507206 -160821141 + Charlie1 DNA MER1_type 2342 2761 0 225 306 58 16 chr4 41508123 41508244 -160820103 + MER5A DNA MER1_type 37 162 -27 477 213 52 77 chr4 41508895 41509050 -160819297 - MER63 DNA MER1_type -59 777 1 207 0 0 0 chr4 41510904 41510927 -160817420 + (A)n Simple_repeat Simple_repeat 1 23 0 249 314 50 25 chr4 41512329 41512450 -160815897 - L2 LINE L2 -15 3298 3175 3397 156 7 4 chr4 41512518 41513071 -160815276 + L1PA16 LINE L1 5608 6162 -4 338 245 69 0 chr4 41513109 41513211 -160815136 + MIR SINE MIR 80 188 -74 2462 70 0 7 chr4 41513450 41513750 -160814597 + AluY SINE Alu 1 298 -13 451 214 0 2 chr4 41513850 41514019 -160814328 + MER2 DNA MER2_type 144 345 0 1816 175 3 7 chr4 41514795 41515103 -160813244 - AluJo SINE Alu -5 307 1 2314 40 0 0 chr4 41515452 41515725 -160812622 - L1PA4 LINE L1 -8 6147 5875 289 337 77 0 chr4 41516557 41516738 -160811609 - MIR SINE MIR -10 252 58 829 225 145 66 chr4 41517087 41517494 -160810853 + MLT1D LTR MaLR 5 390 0 540 206 38 23 chr4 41518154 41518285 -160810062 + MER94 DNA DNA 1 133 -1 450 324 140 8 chr4 41518879 41519129 -160809218 + L2 LINE L2 3028 3310 -3 2274 86 7 3 chr4 41522046 41522338 -160806009 + AluSg SINE Alu 1 293 -17 1640 176 33 3 chr4 41522564 41522866 -160805481 + AluJo SINE Alu 1 311 -1 2446 93 0 3 chr4 41523756 41524069 -160804278 - AluSp SINE Alu -1 312 1 235 354 55 40 chr4 41524284 41524682 -160803665 - L2 LINE L2 -667 2647 2244 304 283 52 58 chr4 41527043 41527216 -160801131 + MER5B DNA MER1_type 1 172 -6 2217 109 0 0 chr4 41527589 41527873 -160800474 + AluSx SINE Alu 5 288 -24 206 81 27 0 chr4 41527880 41527917 -160800430 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2444 81 0 10 chr4 41528359 41528669 -160799678 + AluSc SINE Alu 1 307 -2 2619 47 3 0 chr4 41528671 41528970 -160799377 + AluY SINE Alu 1 300 -11 1258 127 122 0 chr4 41531033 41531238 -160797109 + MER30 DNA MER1_type 1 230 0 275 362 7 27 chr4 41531440 41531589 -160796758 - L3b LINE CR1 -68 1515 1370 4721 140 77 26 chr4 41531873 41532732 -160795615 - MER4D LTR ERV1 0 903 1 310 293 9 26 chr4 41532779 41532895 -160795452 + MIR3 SINE MIR 85 198 -10 227 318 55 39 chr4 41532965 41533104 -160795243 - MIR SINE MIR -38 170 28 299 309 41 0 chr4 41533172 41533269 -160795078 - MIR3 SINE MIR -21 187 87 228 243 105 116 chr4 41534095 41534276 -160794071 + MIR SINE MIR 73 251 -11 1944 115 59 0 chr4 41534731 41535019 -160793328 + AluSx SINE Alu 1 305 -7 331 195 12 61 chr4 41535159 41535241 -160793106 + MIR SINE MIR 64 141 -67 191 333 62 10 chr4 41535648 41535744 -160792603 + L2 LINE L2 3121 3221 -51 2058 117 7 0 chr4 41536208 41536522 -160791825 + AluSx SINE Alu 1 316 0 243 188 0 0 chr4 41536902 41536950 -160791397 + (TA)n Simple_repeat Simple_repeat 1 48 0 1955 196 138 19 chr4 41537576 41538039 -160790308 + MLT2B1 LTR ERVL 3 520 0 1783 289 122 40 chr4 41538116 41539590 -160788757 - L2 LINE L2 0 3313 1712 299 164 16 0 chr4 41539610 41539671 -160788676 + (TA)n Simple_repeat Simple_repeat 1 62 0 1491 233 10 0 chr4 41539671 41539959 -160788388 - AluSp SINE Alu -22 291 1 1537 219 16 30 chr4 41540363 41540733 -160787614 - MLT1A1 LTR MaLR 0 365 1 236 391 25 5 chr4 41541005 41541202 -160787145 + L3 LINE CR1 1269 1469 -108 316 297 59 0 chr4 41541289 41541407 -160786940 - L3 LINE CR1 -213 1364 1240 207 0 0 0 chr4 41542122 41542145 -160786202 + (A)n Simple_repeat Simple_repeat 1 23 0 281 189 0 0 chr4 41542240 41542293 -160786054 - MER33 DNA MER1_type -14 310 258 28 0 0 0 chr4 41542293 41542321 -160786026 + AT_rich Low_complexity Low_complexity 1 28 0 2619 101 32 10 chr4 41542327 41542732 -160785615 - L1MA3 LINE L1 0 6305 5892 1183 181 27 8 chr4 41542732 41542992 -160785355 - MER33 DNA MER1_type -54 270 6 22 0 0 0 chr4 41543078 41543100 -160785247 + AT_rich Low_complexity Low_complexity 1 22 0 1938 126 14 3 chr4 41544768 41545053 -160783294 + AluSx SINE Alu 1 288 -24 1099 116 7 0 chr4 41545743 41545890 -160782457 + AluSg/x SINE Alu 148 295 -17 2446 178 68 7 chr4 41545891 41546435 -160781912 + Charlie1 DNA MER1_type 2178 2754 -7 8417 108 25 29 chr4 41546492 41546829 -160781518 + HSMAR2 DNA Mariner 1 338 -964 2131 130 0 0 chr4 41546829 41547113 -160781234 + AluSx SINE Alu 1 284 -28 8417 108 25 29 chr4 41547113 41548081 -160780266 + HSMAR2 DNA Mariner 338 1301 -1 423 286 121 0 chr4 41549116 41549256 -160779091 - MIR SINE MIR -63 199 43 631 297 70 31 chr4 41549621 41550232 -160778115 + Charlie7 DNA MER1_type 7 682 -1930 496 235 168 0 chr4 41550308 41550457 -160777890 + MER5A DNA MER1_type 9 182 -7 2176 132 0 7 chr4 41551820 41552130 -160776217 + AluSx SINE Alu 1 308 -4 211 339 33 33 chr4 41552921 41553042 -160775305 - MIR3 SINE MIR -16 192 72 213 319 14 0 chr4 41553141 41553210 -160775137 + MIR SINE MIR 77 146 -116 2138 100 0 48 chr4 41553350 41553486 -160774861 + AluSq SINE Alu 1 142 -171 2508 70 0 10 chr4 41553486 41553787 -160774560 + AluY SINE Alu 1 298 -13 2138 100 0 48 chr4 41553787 41553960 -160774387 + AluSq SINE Alu 142 295 -18 942 177 135 15 chr4 41554200 41554460 -160773887 - MER5C DNA MER1_type -1 323 33 456 274 98 12 chr4 41554533 41554697 -160773650 - MIR SINE MIR -79 183 6 192 254 153 25 chr4 41555375 41555493 -160772854 + L2 LINE L2 2442 2574 -740 393 224 84 35 chr4 41555604 41555747 -160772600 - L3 LINE CR1 -195 1382 1233 24 0 0 0 chr4 41556189 41556213 -160772134 + AT_rich Low_complexity Low_complexity 1 24 0 288 143 0 41 chr4 41557277 41557326 -160771021 + AluSp SINE Alu 120 166 -137 2185 130 0 0 chr4 41557455 41557762 -160770585 + AluSx SINE Alu 1 307 -5 1883 148 0 11 chr4 41558458 41558742 -160769605 - AluJb SINE Alu -31 281 1 196 349 18 28 chr4 41558769 41558878 -160769469 - MIR SINE MIR -147 115 8 23 33 0 0 chr4 41558899 41558929 -160769418 + AT_rich Low_complexity Low_complexity 1 30 0 1894 219 87 15 chr4 41559156 41559676 -160768671 + L1MB8 LINE L1 5622 6178 0 2391 55 0 39 chr4 41559937 41560286 -160768061 - AluY SINE Alu 0 338 2 470 261 19 6 chr4 41561280 41561437 -160766910 - MIR SINE MIR -15 247 89 593 288 74 93 chr4 41562020 41562547 -160765800 - L3 LINE CR1 -816 761 245 252 77 0 0 chr4 41562996 41563035 -160765312 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 477 286 49 5 chr4 41563235 41563420 -160764927 + MIR SINE MIR 16 208 -54 556 274 61 74 chr4 41563489 41563868 -160764479 + MLT1H LTR MaLR 29 402 -147 232 259 99 25 chr4 41563836 41563917 -160764430 + MLT1I LTR MaLR 281 367 -42 * 479 340 57 39 chr4 41564240 41564522 -160763825 - L2 LINE L2 -1 3312 3026 2092 108 0 0 chr4 41565063 41565332 -160763015 + AluSg SINE Alu 1 269 -41 368 255 201 7 chr4 41565426 41565575 -160762772 - MER5A DNA MER1_type -1 188 11 2258 91 0 0 chr4 41566102 41566387 -160761960 + AluSx SINE Alu 12 296 -16 544 292 68 68 chr4 41566437 41566910 -160761437 - L2 LINE L2 0 3313 2841 522 310 50 25 chr4 41568375 41568617 -160759730 + MIR SINE MIR 12 259 -3 735 75 83 8 chr4 41570580 41570679 -160757668 + MER30 DNA MER1_type 1 112 -118 216 0 0 0 chr4 41570679 41570703 -160757644 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 735 75 83 8 chr4 41570703 41570723 -160757624 + MER30 DNA MER1_type 112 129 -101 234 270 36 102 chr4 41571341 41571478 -160756869 + MIR3 SINE MIR 35 162 -46 527 139 66 209 chr4 41571717 41571961 -160756386 + MER3 DNA MER1_type 1 209 0 2355 74 3 14 chr4 41573390 41573686 -160754661 + AluSc SINE Alu 1 293 -16 1779 161 7 16 chr4 41573932 41574236 -160754111 + AluJo SINE Alu 1 301 -11 182 365 28 9 chr4 41574485 41574592 -160753755 + MIR SINE MIR 14 122 -140 2229 102 0 13 chr4 41574616 41574919 -160753428 + AluSx SINE Alu 3 301 -11 304 237 53 61 chr4 41575181 41575295 -160753052 + MER5A DNA MER1_type 77 189 0 500 104 0 104 chr4 41575320 41575416 -160752931 + AluS SINE Alu 5 90 -222 581 313 30 30 chr4 41576304 41576537 -160751810 - MIR SINE MIR 0 262 30 1062 68 0 0 chr4 41576546 41576679 -160751668 - AluSp/q SINE Alu -5 308 176 236 191 0 0 chr4 41577160 41577207 -160751140 - L2 LINE L2 -2 3311 3265 597 258 46 94 chr4 41577340 41577669 -160750678 + MLT1I LTR MaLR 72 384 -25 206 195 0 0 chr4 41578176 41578217 -160750130 - L2 LINE L2 -9 3304 3264 515 236 42 35 chr4 41579347 41579491 -160748856 - MIR SINE MIR -53 209 65 246 241 0 0 chr4 41581409 41581463 -160746884 - MER91B DNA MER1_type -136 54 1 267 164 127 0 chr4 41581729 41581784 -160746563 - HAL1 LINE L1 -2004 503 442 262 194 16 32 chr4 41581784 41581846 -160746501 + LTR49 LTR ERV1 459 519 -76 761 264 139 11 chr4 41581911 41582191 -160746156 - HAL1 LINE L1 -2107 400 85 1894 122 4 0 chr4 41582202 41582457 -160745890 + AluSx SINE Alu 1 256 -56 22 0 0 0 chr4 41582457 41582479 -160745868 + AT_rich Low_complexity Low_complexity 1 22 0 2168 118 3 0 chr4 41583108 41583397 -160744950 - AluSx SINE Alu -22 290 1 1685 285 93 25 chr4 41583596 41583948 -160744399 - L2 LINE L2 -5 3308 2981 2329 99 0 3 chr4 41583948 41584260 -160744087 + AluSx SINE Alu 1 311 -1 1685 285 93 25 chr4 41584260 41584857 -160743490 - L2 LINE L2 -332 2981 2268 1911 146 9 44 chr4 41584860 41585181 -160743166 + AluSx SINE Alu 1 310 -2 2350 179 179 0 chr4 41585232 41585680 -160742667 + MLT1A1-int LTR MaLR 1208 1735 0 774 167 35 14 chr4 41585680 41585824 -160742523 + MLT1A1 LTR MaLR 1 147 -218 2109 138 0 13 chr4 41586637 41586948 -160741399 - AluSx SINE Alu -5 307 1 312 27 0 0 chr4 41587893 41587930 -160740417 + (CCA)n Simple_repeat Simple_repeat 2 38 0 2239 114 7 7 chr4 41587945 41588253 -160740094 - AluSg SINE Alu -2 308 1 2230 116 3 0 chr4 41588802 41589103 -160739244 + AluSg SINE Alu 1 302 -8 210 209 0 0 chr4 41589371 41589414 -160738933 - L2 LINE L2 -216 3056 3014 315 214 351 15 chr4 41589494 41589625 -160738722 - MER5A DNA MER1_type -6 183 9 2379 59 0 3 chr4 41589992 41590302 -160738045 + AluY SINE Alu 1 309 0 503 293 129 24 chr4 41591003 41591337 -160737010 - L2 LINE L2 -18 3295 2927 860 203 127 38 chr4 41591445 41591682 -160736665 + MIR SINE MIR 5 262 0 205 280 13 13 chr4 41591883 41591958 -160736389 + L2 LINE L2 2440 2514 -800 2200 102 0 3 chr4 41591984 41592297 -160736050 - AluSx SINE Alu 0 312 1 1479 216 90 29 chr4 41592520 41593007 -160735340 - LTR33A LTR ERVL 0 523 7 4324 85 2 0 chr4 41593022 41593575 -160734772 + MER41A LTR ERV1 1 554 0 23 0 0 0 chr4 41594388 41594411 -160733936 + AT_rich Low_complexity Low_complexity 1 23 0 783 292 16 20 chr4 41594657 41594962 -160733385 + L1ME4a LINE L1 5546 5849 -272 249 167 0 0 chr4 41595008 41595044 -160733303 + Alu SINE Alu 136 171 -131 1332 167 4 43 chr4 41595044 41595156 -160733191 + 7SLRNA srpRNA srpRNA 75 175 -145 2324 108 0 0 chr4 41595156 41595462 -160732885 + AluSg SINE Alu 1 306 -4 1332 167 4 43 chr4 41595462 41595582 -160732765 + 7SLRNA srpRNA srpRNA 175 298 -22 319 241 0 27 chr4 41595596 41595671 -160732676 + L1ME4a LINE L1 5985 6058 -63 751 158 47 8 chr4 41595671 41595798 -160732549 - FLAM_A SINE Alu -1 132 1 319 241 0 27 chr4 41595798 41595834 -160732513 + L1ME4a LINE L1 6058 6093 -28 309 179 150 29 chr4 41595900 41595916 -160732431 - L1MA10 LINE L1 0 6334 6319 2013 215 111 46 chr4 41595916 41596610 -160731737 - L1ME1 LINE L1 -5 6161 5423 2030 150 73 51 chr4 41596610 41596662 -160731685 + LOR1b LTR ERV1 1 50 -411 848 173 0 0 chr4 41596662 41596795 -160731552 - FLAM_C SINE Alu 0 133 1 2030 150 73 51 chr4 41596795 41597155 -160731192 + LOR1b LTR ERV1 50 422 -39 1443 189 44 19 chr4 41597157 41597551 -160730796 - L1ME1 LINE L1 -752 5394 5016 443 197 111 0 chr4 41597544 41597661 -160730686 - L1M4 LINE L1 -890 5256 5127 * 613 178 11 38 chr4 41597715 41597900 -160730447 + CT-rich Low_complexity Low_complexity 1 180 0 1137 121 17 6 chr4 41599141 41599314 -160729033 + AluSg/x SINE Alu 129 303 -9 2129 181 27 74 chr4 41599621 41600021 -160728326 + L1MB8 LINE L1 5674 6045 -133 2162 110 0 0 chr4 41600021 41600312 -160728035 + AluSx SINE Alu 14 304 -8 2129 181 27 74 chr4 41600312 41600435 -160727912 + L1MB8 LINE L1 6045 6172 -6 777 209 17 6 chr4 41600548 41600720 -160727627 + MER96 DNA MER1_type 2 175 0 181 271 0 68 chr4 41600966 41601025 -160727322 - MIR SINE MIR -179 83 29 180 211 90 115 chr4 41601788 41601944 -160726403 + MER5B DNA MER1_type 8 159 -19 297 239 261 0 chr4 41603060 41603190 -160725157 + MER5A DNA MER1_type 26 189 0 6310 84 8 0 chr4 41603392 41604220 -160724127 + L1PA10 LINE L1 5334 6168 0 475 306 73 13 chr4 41606044 41606276 -160722071 + MIR SINE MIR 17 262 0 213 245 71 52 chr4 41606598 41606753 -160721594 - L2 LINE L2 -308 3005 2848 218 339 142 0 chr4 41606906 41607033 -160721314 + L3 LINE CR1 618 762 -815 1793 167 4 0 chr4 41607129 41607410 -160720937 - AluJo SINE Alu -30 282 1 431 162 0 14 chr4 41607943 41608017 -160720330 + MER6 DNA MER2_type 793 865 0 260 310 9 18 chr4 41609213 41609326 -160719021 + MARNA DNA Mariner 284 395 -191 22 35 0 0 chr4 41610558 41610587 -160717760 + AT_rich Low_complexity Low_complexity 1 29 0 745 268 51 0 chr4 41610592 41610827 -160717520 - MIR SINE MIR -10 252 6 412 282 144 17 chr4 41610901 41611082 -160717265 - MIR SINE MIR -27 235 32 666 298 31 4 chr4 41611337 41611562 -160716785 + MIR SINE MIR 18 248 -14 234 331 24 39 chr4 41611629 41611756 -160716591 + L2 LINE L2 3188 3312 -1 2348 111 0 13 chr4 41612338 41612654 -160715693 - AluSx SINE Alu 0 312 1 597 260 83 0 chr4 41613080 41613261 -160715086 - MIR SINE MIR -14 248 54 239 298 262 0 chr4 41613307 41613448 -160714899 - MER5A DNA MER1_type -2 187 10 642 199 194 52 chr4 41613752 41613943 -160714404 - MER20 DNA MER1_type -1 218 1 2528 60 10 0 chr4 41615980 41616279 -160712068 + AluY SINE Alu 1 302 -9 684 306 55 4 chr4 41616458 41616693 -160711654 + MIR SINE MIR 16 262 0 307 238 0 38 chr4 41618056 41618136 -160710211 - MIR3 SINE MIR -24 184 108 303 264 101 8 chr4 41618144 41618273 -160710074 - MIR SINE MIR -11 251 111 484 237 48 38 chr4 41618375 41618561 -160709786 + MIR SINE MIR 58 245 -17 798 188 47 18 chr4 41620100 41620270 -160708077 + MER5A DNA MER1_type 6 180 -9 2027 125 3 14 chr4 41620474 41620771 -160707576 - AluSq SINE Alu -19 294 1 1703 171 35 49 chr4 41621412 41621780 -160706567 - MLT1A2 LTR MaLR -11 363 1 22 0 0 0 chr4 41622565 41622587 -160705760 + AT_rich Low_complexity Low_complexity 1 22 0 2628 85 33 3 chr4 41623804 41624168 -160704179 + THE1C LTR MaLR 1 375 0 2284 102 3 0 chr4 41625154 41625448 -160702899 + AluSg SINE Alu 1 295 -15 235 346 90 8 chr4 41626484 41626617 -160701730 - MIR SINE MIR -93 169 26 891 173 31 45 chr4 41626617 41626842 -160701505 + L1MB2 LINE L1 5286 5474 -706 3653 149 31 16 chr4 41626924 41627601 -160700746 + L1MB2 LINE L1 5483 6169 -2 3732 171 33 14 chr4 41629084 41629778 -160698569 + MER50 LTR ERV1 2 708 -26 253 95 0 0 chr4 41630594 41630636 -160697711 + Alu SINE Alu 259 300 -2 303 93 0 0 chr4 41630757 41630800 -160697547 + (CA)n Simple_repeat Simple_repeat 2 44 0 799 204 26 0 chr4 41631322 41631474 -160696873 - FRAM SINE Alu -9 157 2 196 277 252 8 chr4 41632518 41632637 -160695710 - MIR3 SINE MIR -7 201 54 182 231 110 55 chr4 41633862 41633953 -160694394 + MIR SINE MIR 65 160 -102 21 36 0 0 chr4 41634204 41634232 -160694115 + AT_rich Low_complexity Low_complexity 1 28 0 746 184 6 31 chr4 41635386 41635549 -160692798 + L1PA16 LINE L1 6008 6166 0 22 0 0 0 chr4 41635601 41635623 -160692724 + AT_rich Low_complexity Low_complexity 1 22 0 2236 80 0 27 chr4 41635637 41635937 -160692410 - AluY SINE Alu -19 292 1 21 0 0 0 chr4 41636364 41636385 -160691962 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 41636701 41636722 -160691625 + AT_rich Low_complexity Low_complexity 1 21 0 1063 203 48 0 chr4 41636934 41637141 -160691206 - MER58A DNA MER1_type -6 218 2 3618 187 81 14 chr4 41640669 41641438 -160686909 + L1MC1 LINE L1 5514 6333 0 232 234 50 106 chr4 41641920 41641945 -160686402 - MARNA DNA Mariner -211 375 350 2377 89 0 22 chr4 41641945 41642261 -160686086 - AluY SINE Alu -2 309 1 232 234 50 106 chr4 41642261 41642376 -160685971 - MARNA DNA Mariner -236 350 243 634 289 53 19 chr4 41642388 41642476 -160685871 + L1ME3A LINE L1 5943 6027 -143 2170 120 0 13 chr4 41642476 41642777 -160685570 - AluSx SINE Alu -15 297 1 634 289 53 19 chr4 41642777 41642896 -160685451 + L1ME3A LINE L1 6027 6157 -13 230 180 20 20 chr4 41643022 41643072 -160685275 + Alu SINE Alu 137 186 -115 938 210 0 0 chr4 41643195 41643362 -160684985 + FAM SINE Alu 1 167 -8 248 241 52 0 chr4 41643412 41643470 -160684877 + MARNA DNA Mariner 454 514 -72 2090 122 0 7 chr4 41645320 41645616 -160682731 + AluSg SINE Alu 1 294 -16 1249 85 50 50 chr4 41646449 41646523 -160681824 - MER30 DNA MER1_type -31 199 126 2212 101 10 0 chr4 41646523 41646819 -160681528 + AluSg SINE Alu 1 299 -11 1249 85 50 50 chr4 41646819 41646846 -160681501 - MER30 DNA MER1_type -104 126 100 213 65 0 0 chr4 41646846 41646877 -160681470 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1249 85 50 50 chr4 41646877 41646973 -160681374 - MER30 DNA MER1_type -129 101 1 1889 148 0 42 chr4 41647332 41647642 -160680705 - AluJb SINE Alu -14 298 2 407 272 75 14 chr4 41647683 41647830 -160680517 - MIR SINE MIR -9 253 98 246 262 0 0 chr4 41648535 41648596 -160679751 - MIR SINE MIR -61 147 87 256 286 85 45 chr4 41648799 41648998 -160679349 - MIR SINE MIR -6 256 50 3036 193 70 35 chr4 41650939 41651643 -160676704 + L1MB3 LINE L1 5440 6167 -16 1845 108 10 98 chr4 41651724 41652031 -160676316 - AluSx SINE Alu -14 298 19 282 269 62 21 chr4 41652562 41652707 -160675640 + MIR SINE MIR 107 257 -5 233 367 39 31 chr4 41652728 41652957 -160675390 + L2 LINE L2 1757 1987 -1327 192 333 0 0 chr4 41653069 41653123 -160675224 + L2 LINE L2 3194 3247 -25 2904 72 6 0 chr4 41653615 41653977 -160674370 + THE1B LTR MaLR 1 364 0 2146 123 30 0 chr4 41654479 41654779 -160673568 - AluSq SINE Alu -4 309 1 25 0 0 0 chr4 41655072 41655097 -160673250 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 41655227 41655249 -160673098 + AT_rich Low_complexity Low_complexity 1 22 0 248 339 151 0 chr4 41657979 41658197 -160670150 + L2 LINE L2 2563 2813 -501 334 309 120 50 chr4 41658303 41658604 -160669743 - L2 LINE L2 -50 3263 2942 * 527 313 167 19 chr4 41658603 41658974 -160669373 + L2 LINE L2 2885 3310 -3 2274 86 7 3 chr4 41661890 41662182 -160666165 + AluSg SINE Alu 1 293 -17 1675 176 33 0 chr4 41662408 41662709 -160665638 + AluJo SINE Alu 1 311 -1 2336 100 6 3 chr4 41663600 41663911 -160664436 - AluSp SINE Alu -1 312 1 235 354 55 40 chr4 41664126 41664524 -160663823 - L2 LINE L2 -667 2647 2244 304 283 52 58 chr4 41666885 41667058 -160661289 + MER5B DNA MER1_type 1 172 -6 2171 109 3 0 chr4 41667431 41667714 -160660633 + AluSx SINE Alu 5 288 -24 206 81 27 0 chr4 41667721 41667758 -160660589 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2441 76 0 10 chr4 41668200 41668504 -160659843 + AluSc SINE Alu 1 301 -8 379 264 88 6 chr4 41670898 41671057 -160657290 + MIR SINE MIR 89 260 -2 1934 180 0 3 chr4 41671091 41671391 -160656956 - AluJb SINE Alu -13 299 1 1578 193 95 35 chr4 41671752 41672214 -160656133 - LTR54B LTR ERV1 -1 497 8 22 0 0 0 chr4 41672663 41672685 -160655662 + AT_rich Low_complexity Low_complexity 1 22 0 939 214 110 3 chr4 41672931 41673221 -160655126 - Charlie4a DNA MER1_type 0 508 188 227 204 0 23 chr4 41673254 41673298 -160655049 + MER21B LTR ERV1 41 83 -780 1820 214 90 84 chr4 41673377 41673739 -160654608 + MER21B LTR ERV1 98 457 -474 2320 75 0 0 chr4 41673739 41674046 -160654301 - AluY SINE Alu 0 307 1 1820 214 90 84 chr4 41674046 41674358 -160653989 + MER21B LTR ERV1 457 869 -62 602 145 16 32 chr4 41674372 41674410 -160653937 - Charlie4a DNA MER1_type -318 190 153 1296 133 87 5 chr4 41674410 41674628 -160653719 + MER46A DNA MER2_type 1 236 0 602 145 16 32 chr4 41674628 41674713 -160653634 - Charlie4a DNA MER1_type -355 153 69 2079 119 19 19 chr4 41675707 41676018 -160652329 - AluSq SINE Alu 0 313 3 293 229 110 18 chr4 41676177 41676286 -160652061 - MIR SINE MIR -12 250 132 21 0 0 0 chr4 41677399 41677420 -160650927 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 41677950 41677979 -160650368 + AT_rich Low_complexity Low_complexity 1 29 0 499 307 22 39 chr4 41678003 41678182 -160650165 - MER91A DNA MER1_type -18 178 3 440 358 25 37 chr4 41680077 41680320 -160648027 + L3 LINE CR1 878 1117 -460 580 168 11 0 chr4 41680442 41680537 -160647810 + AluJ/FLAM SINE Alu 2 97 -215 935 207 6 0 chr4 41680537 41680706 -160647641 + FRAM SINE Alu 1 40 0 2372 89 0 3 chr4 41681103 41681407 -160646940 + AluSx SINE Alu 1 303 -9 198 71 0 0 chr4 41681737 41681765 -160646582 + (TC)n Simple_repeat Simple_repeat 1 28 0 2458 91 3 0 chr4 41681882 41682191 -160646156 + AluSx SINE Alu 1 310 -2 2255 47 4 0 chr4 41682193 41682451 -160645896 + AluY SINE Alu 1 259 -52 238 111 0 0 chr4 41682757 41682793 -160645554 + MIR SINE MIR 198 233 -29 309 175 29 126 chr4 41683216 41683319 -160645028 + MLT1H LTR MaLR 457 549 0 2230 112 0 7 chr4 41683385 41683679 -160644668 + AluSx SINE Alu 1 292 -20 9355 218 61 43 chr4 41684422 41684733 -160643614 + L1ME1 LINE L1 2355 2659 -3507 2158 126 10 3 chr4 41684733 41685042 -160643305 - AluSq SINE Alu -2 311 1 9355 218 61 43 chr4 41685042 41686964 -160641383 + L1ME1 LINE L1 2659 4546 -1620 2241 96 20 0 chr4 41686964 41687267 -160641080 - AluY SINE Alu -2 309 1 1899 157 28 0 chr4 41687269 41687555 -160640792 - AluJb SINE Alu -18 294 1 9355 218 61 43 chr4 41687555 41688547 -160639800 + L1ME1 LINE L1 4546 5673 -493 2314 82 0 0 chr4 41688547 41688859 -160639488 - AluY SINE Alu 0 312 1 9355 218 61 43 chr4 41688859 41689307 -160639040 + L1ME1 LINE L1 5673 6112 -54 1846 146 7 4 chr4 41689314 41689594 -160638753 - AluJb SINE Alu -18 294 14 2151 151 43 3 chr4 41689720 41690072 -160638275 - MER47A DNA MER2_type 0 366 1 252 291 57 43 chr4 41690141 41690224 -160638123 + MIR3 SINE MIR 59 146 -62 1710 163 123 6 chr4 41690224 41690550 -160637797 - MLT1A1 LTR MaLR -1 364 1 252 291 57 43 chr4 41690550 41690607 -160637740 + MIR3 SINE MIR 146 201 -7 279 260 110 16 chr4 41690677 41690804 -160637543 - MIR SINE MIR -45 217 79 332 282 43 0 chr4 41691119 41691236 -160637111 - MIR SINE MIR -35 227 106 235 290 0 0 chr4 41691323 41691351 -160636996 + GA-rich Low_complexity Low_complexity 3 30 -41 2354 92 0 7 chr4 41691351 41691657 -160636690 + AluSg SINE Alu 1 304 -6 235 290 0 0 chr4 41691657 41691697 -160636650 + GA-rich Low_complexity Low_complexity 29 71 0 701 101 44 8 chr4 41691875 41692123 -160636224 + (CA)n Simple_repeat Simple_repeat 1 257 0 830 67 34 22 chr4 41692143 41692321 -160636026 + (CA)n Simple_repeat Simple_repeat 1 180 0 249 109 0 0 chr4 41692601 41692647 -160635700 + (TC)n Simple_repeat Simple_repeat 2 47 0 203 292 130 11 chr4 41692827 41692990 -160635357 + MIR SINE MIR 40 226 -36 350 258 21 75 chr4 41693673 41693859 -160634488 - L2 LINE L2 -598 2716 2541 2014 123 27 20 chr4 41693906 41694207 -160634140 - AluSq SINE Alu -9 304 2 447 222 17 8 chr4 41694260 41694377 -160633970 + L1M4 LINE L1 4132 4249 -1897 960 165 69 58 chr4 41744414 41744675 -160583672 - pTR5 LTR ERV1 -1432 1006 743 1642 86 108 4 chr4 41744675 41744907 -160583440 - LTR12 LTR ERV1 -406 308 53 248 269 0 0 chr4 41744907 41744959 -160583388 - LTR30 LTR ERV1 -670 52 1 3085 111 221 132 chr4 41746030 41747331 -160581016 + pTR5 LTR ERV1 1167 2438 0 1345 245 80 47 chr4 41748393 41748883 -160579464 - MLT1J LTR MaLR -5 506 1 546 214 54 36 chr4 41748884 41749052 -160579295 - MIR SINE MIR -61 201 31 430 115 29 29 chr4 41749917 41750021 -160578326 + CT-rich Low_complexity Low_complexity 3 106 0 432 67 0 0 chr4 41750068 41750128 -160578219 + (TG)n Simple_repeat Simple_repeat 2 61 0 263 65 0 0 chr4 41750130 41750161 -160578186 - U2 snRNA snRNA -152 36 6 183 80 0 0 chr4 41750785 41750810 -160577537 + (TCC)n Simple_repeat Simple_repeat 3 27 0 820 245 158 41 chr4 41751882 41752224 -160576123 + MLT1J1 LTR MaLR 17 431 -15 3463 139 22 17 chr4 41752357 41752812 -160575535 - L1MB3 LINE L1 -7 6176 5716 2391 155 46 10 chr4 41752812 41753225 -160575122 + MSTA LTR MaLR 1 428 0 3463 139 22 17 chr4 41753225 41753358 -160574989 - L1MB3 LINE L1 -467 5716 5585 2048 110 11 0 chr4 41753765 41754038 -160574309 + AluSx SINE Alu 10 285 -27 444 19 0 0 chr4 41754038 41754091 -160574256 + (CA)n Simple_repeat Simple_repeat 2 54 0 692 169 22 0 chr4 41755126 41755279 -160573068 + L1PA12 LINE L1 5918 6073 -95 363 208 14 0 chr4 41755387 41755459 -160572888 - MER5A DNA MER1_type -2 187 115 201 121 0 0 chr4 41755546 41755579 -160572768 + (CACCAT)n Simple_repeat Simple_repeat 1 33 0 516 262 13 13 chr4 41755643 41755792 -160572555 - MIR SINE MIR -101 161 13 189 0 0 0 chr4 41755920 41755941 -160572406 + (TTTC)n Simple_repeat Simple_repeat 2 22 0 1906 119 3 35 chr4 41755945 41756230 -160572117 - AluSx SINE Alu -36 276 1 377 294 12 25 chr4 41758017 41758180 -160570167 + MIR SINE MIR 31 191 -71 3904 91 16 44 chr4 41759511 41759635 -160568712 - MER41A LTR ERV1 0 554 428 1792 87 14 79 chr4 41759635 41759912 -160568435 + AluSx SINE Alu 35 293 -19 3904 91 16 44 chr4 41759912 41760357 -160567990 - MER41A LTR ERV1 -126 428 1 209 290 14 0 chr4 41760485 41760554 -160567793 - MIR SINE MIR -63 145 76 233 258 113 57 chr4 41760809 41761057 -160567290 - L1MC4a LINE L1 -1639 6169 5908 1740 166 17 84 chr4 41761552 41761942 -160566405 - MLT1B LTR MaLR -1 389 27 2162 104 10 0 chr4 41761942 41762231 -160566116 - AluSq SINE Alu -1 312 21 1740 166 17 84 chr4 41762231 41762257 -160566090 - MLT1B LTR MaLR -363 27 1 507 327 98 9 chr4 41765634 41765848 -160562499 - MIR SINE MIR 0 262 30 222 304 54 11 chr4 41765944 41766036 -160562311 - L2 LINE L2 -13 3300 3205 419 282 0 24 chr4 41766299 41766423 -160561924 + MIR SINE MIR 20 140 -122 1029 228 24 5 chr4 41766462 41766673 -160561674 - MER58A DNA MER1_type 0 224 10 198 200 0 0 chr4 41767219 41767259 -160561088 + L2 LINE L2 3273 3312 -1 181 387 32 26 chr4 41767429 41767481 -160560866 - L2 LINE L2 -852 2462 2412 1247 216 95 43 chr4 41767481 41767828 -160560519 - MLT1A1 LTR MaLR 0 365 1 181 387 32 26 chr4 41767828 41767930 -160560417 - L2 LINE L2 -902 2412 2307 235 292 84 4 chr4 41768976 41769091 -160559256 - MIR SINE MIR -77 131 26 216 0 0 0 chr4 41769334 41769358 -160558989 + (T)n Simple_repeat Simple_repeat 1 24 0 7502 193 10 22 chr4 41770559 41772400 -160555947 - L1P LINE L1 -1022 5124 3305 4413 212 7 1 chr4 41772395 41773400 -160554947 - L1PA15-16 LINE L1 -4040 2809 1799 * 1657 312 12 14 chr4 41773409 41773967 -160554380 - L1PA15-16 LINE L1 -6230 609 53 284 192 0 68 chr4 41773979 41774052 -160554295 - MLT1C LTR MaLR -346 121 54 387 338 82 28 chr4 41774657 41775045 -160553302 - LTR16C LTR ERVL -2 489 81 1943 158 20 0 chr4 41775079 41775376 -160552971 - AluJb SINE Alu -9 303 1 2184 80 19 15 chr4 41776542 41776866 -160551481 + THE1B LTR MaLR 40 364 0 670 286 72 10 chr4 41776909 41777213 -160551134 - MLT1L LTR MaLR -77 538 216 757 276 113 43 chr4 41777415 41777741 -160550606 + L1MC5 LINE L1 7272 7574 -387 2108 126 0 10 chr4 41777741 41778042 -160550305 + AluSx SINE Alu 1 298 -14 757 276 113 43 chr4 41778042 41778319 -160550028 + L1MC5 LINE L1 7574 7917 -44 2076 125 35 37 chr4 41778374 41778750 -160549597 - THE1C LTR MaLR 0 375 1 295 280 10 10 chr4 41779273 41779373 -160548974 - MLT1L LTR MaLR -483 132 33 623 177 24 6 chr4 41779574 41779738 -160548609 + CT-rich Low_complexity Low_complexity 2 168 0 1816 111 64 77 chr4 41781445 41781822 -160546525 - Tigger2 DNA MER2_type 0 2718 2347 611 211 0 0 chr4 41781821 41781949 -160546398 - Tigger2 DNA MER2_type -2590 128 1 * 4484 138 30 6 chr4 41782199 41782993 -160545354 + L1PA16 LINE L1 5259 6071 -95 912 235 154 10 chr4 41782996 41783307 -160545040 + MLT1C LTR MaLR 112 467 0 189 147 0 0 chr4 41783491 41783525 -160544822 + (TAATG)n Simple_repeat Simple_repeat 5 38 0 661 180 189 69 chr4 41783586 41783662 -160544685 - MIR SINE MIR -14 248 182 1983 107 11 4 chr4 41783662 41783969 -160544378 - AluSx SINE Alu 0 309 1 661 180 189 69 chr4 41783969 41784107 -160544240 - MIR SINE MIR -80 182 6 228 237 0 70 chr4 41784383 41784497 -160543850 + L1M4 LINE L1 4945 5050 -1096 203 184 0 0 chr4 41784513 41784551 -160543796 + T-rich Low_complexity Low_complexity 1 38 0 829 174 28 142 chr4 41784944 41785050 -160543297 - MER58A DNA MER1_type -2196 224 162 2269 103 3 3 chr4 41785050 41785350 -160542997 + AluSx SINE Alu 1 300 -12 829 174 28 142 chr4 41785350 41785496 -160542851 - MER58A DNA MER1_type -2258 162 1 820 223 27 5 chr4 41786298 41786522 -160541825 - MER97a DNA MER1_type? -607 287 59 258 32 0 0 chr4 41786561 41786592 -160541755 + (CA)n Simple_repeat Simple_repeat 1 31 0 2050 131 0 0 chr4 41788898 41789206 -160539141 + AluSx SINE Alu 1 308 0 2504 162 0 36 chr4 41789243 41789682 -160538665 + MSTC LTR MaLR 2 424 -4 976 168 6 28 chr4 41790027 41790206 -160538141 + FAM SINE Alu 1 175 0 345 263 115 32 chr4 41790522 41790678 -160537669 - MIR SINE MIR -42 220 52 639 248 132 15 chr4 41790678 41791044 -160537303 + LTR48 LTR ERV1 1 485 -302 417 182 104 6 chr4 41791077 41791216 -160537131 + LTR48 LTR ERV1 354 721 -36 383 241 102 24 chr4 41791284 41791450 -160536897 + LTR48 LTR ERV1 609 787 0 2246 128 0 3 chr4 41791702 41792061 -160536286 + AluSx SINE Alu 1 358 0 6279 228 58 25 chr4 41792297 41793000 -160535347 - L1P LINE L1 -1603 4543 3865 2064 92 28 0 chr4 41793000 41793283 -160535064 - AluY SINE Alu -20 291 1 6279 228 58 25 chr4 41793283 41794604 -160533743 - L1P LINE L1 -2281 3865 2452 669 250 65 13 chr4 41794602 41794944 -160533403 - L1ME LINE L1 -686 5476 5119 * 387 105 0 0 chr4 41794994 41795051 -160533296 + (TG)n Simple_repeat Simple_repeat 2 58 0 949 170 97 92 chr4 41795057 41795441 -160532906 - MLT2B1 LTR ERVL -42 478 1 755 224 10 15 chr4 41795506 41795702 -160532645 - L1ME LINE L1 -1217 4929 4735 1670 216 45 93 chr4 41795726 41796286 -160532061 - MLT1F LTR MaLR -9 533 1 268 270 0 0 chr4 41796286 41796360 -160531987 - L1ME LINE L1 -1407 4739 4666 934 209 16 0 chr4 41796372 41796704 -160531643 - AluJo SINE Alu 0 456 122 1041 254 82 11 chr4 41796704 41797169 -160531178 - L1ME LINE L1 -1491 4655 4158 914 196 38 5 chr4 41797169 41797353 -160530994 - MER58A DNA MER1_type -8 216 27 889 273 60 24 chr4 41797363 41797696 -160530651 + L1MC4 LINE L1 7557 7901 -141 252 281 0 31 chr4 41798231 41798295 -160530052 - L3 LINE CR1 -2 1575 1514 732 151 17 0 chr4 41798325 41798444 -160529903 - AluJo SINE Alu -181 121 1 595 127 37 124 chr4 41798452 41798630 -160529717 - L1M3 LINE L1 -571 5600 5428 1839 208 30 40 chr4 41798641 41799113 -160529234 + MLT1C LTR MaLR 1 467 0 325 282 0 0 chr4 41799250 41799321 -160529026 - L2 LINE L2 -4 3309 3239 2230 101 3 0 chr4 41800128 41800425 -160527922 + AluSg SINE Alu 12 309 -1 332 218 11 0 chr4 41800599 41800686 -160527661 + GA-rich Low_complexity Low_complexity 4 91 0 319 284 116 7 chr4 41801406 41801561 -160526786 + MIR SINE MIR 70 241 -21 262 355 40 24 chr4 41801674 41801798 -160526549 - MIR SINE MIR -133 129 4 1387 224 176 10 chr4 41801824 41802386 -160525961 - LTR50 LTR ERVL -2 793 87 222 348 96 15 chr4 41802548 41802683 -160525664 + L2 LINE L2 3127 3272 0 321 279 23 23 chr4 41803195 41803281 -160525066 - MIR3 SINE MIR -19 189 104 2244 115 0 0 chr4 41803383 41803678 -160524669 - AluSx SINE Alu -17 295 1 22 0 0 0 chr4 41803771 41803793 -160524554 + AT_rich Low_complexity Low_complexity 1 22 0 459 276 84 37 chr4 41804620 41804943 -160523404 - L1ME LINE L1 -399 5722 5385 255 276 184 20 chr4 41804948 41805046 -160523301 + L2 LINE L2 3195 3308 -5 197 378 0 0 chr4 41805277 41805351 -160522996 + MIR SINE MIR 49 122 -140 219 228 18 0 chr4 41807045 41807095 -160521252 + (CA)n Simple_repeat Simple_repeat 1 54 -4 2402 152 21 39 chr4 41807095 41807148 -160521199 + MSTC LTR MaLR 3 55 -373 2310 89 3 13 chr4 41807148 41807462 -160520885 + AluY SINE Alu 1 311 0 2402 152 21 39 chr4 41807462 41807842 -160520505 + MSTC LTR MaLR 55 428 0 219 228 18 0 chr4 41807842 41807848 -160520499 + (CA)n Simple_repeat Simple_repeat 54 58 0 197 307 32 75 chr4 41807914 41808064 -160520283 - MIR SINE MIR 0 262 74 1681 145 0 0 chr4 41808064 41808306 -160520041 - AluJb SINE Alu -22 290 49 197 307 32 75 chr4 41808306 41808376 -160519971 - MIR SINE MIR -188 74 3 1303 239 77 78 chr4 41808658 41809090 -160519257 + L1ME2 LINE L1 3226 3658 -2488 1834 151 7 26 chr4 41809090 41809395 -160518952 + AluJb SINE Alu 1 299 -13 1303 239 77 78 chr4 41809395 41809825 -160518522 + L1ME2 LINE L1 3658 4087 -2059 702 142 49 120 chr4 41809828 41809975 -160518372 - AluSg/x SINE Alu -22 288 155 4357 157 64 60 chr4 41809975 41811042 -160517305 - MER11C LTR ERVK 0 1071 1 702 142 49 120 chr4 41811042 41811077 -160517270 - AluSg/x SINE Alu -155 155 119 794 141 7 30 chr4 41811078 41811213 -160517134 - FLAM_C SINE Alu 0 133 2 1929 242 46 36 chr4 41811233 41812042 -160516305 + L1ME2 LINE L1 4112 4928 -1218 347 217 72 105 chr4 41812059 41812211 -160516136 + L1ME2 LINE L1 5160 5306 -840 1845 67 0 52 chr4 41812211 41812481 -160515866 + MER1A DNA MER1_type 136 391 -138 276 50 0 0 chr4 41812478 41812518 -160515829 - Charlie3 DNA MER1_type -92 2618 2579 * 252 105 26 0 chr4 41812528 41812566 -160515781 + Charlie3 DNA MER1_type 2668 2706 -4 1624 196 36 60 chr4 41812576 41813080 -160515267 + L1ME2 LINE L1 5650 6141 -23 1580 116 0 0 chr4 41813530 41813737 -160514610 - AluSg/x SINE Alu -12 300 94 1373 183 95 9 chr4 41813954 41814271 -160514076 + MLT1B LTR MaLR 47 390 0 265 261 102 64 chr4 41814438 41814595 -160513752 - MIR SINE MIR -72 190 28 531 251 29 82 chr4 41814738 41814908 -160513439 + MIR SINE MIR 57 216 -46 1585 175 11 118 chr4 41814908 41815372 -160512975 - MLT2D LTR ERVL 0 414 1 531 251 29 82 chr4 41815372 41815408 -160512939 + MIR SINE MIR 216 252 -10 28341 124 9 55 chr4 41815457 41821932 -160506415 - L1PA8 LINE L1 -1 6171 2 8149 28 1 0 chr4 41821965 41823079 -160505268 + L1PA3 LINE L1 5041 6155 0 393 329 79 30 chr4 41823744 41823908 -160504439 - L3 LINE CR1 -44 1533 1362 201 307 0 34 chr4 41823968 41824056 -160504291 + GA-rich Low_complexity Low_complexity 3 87 0 3136 219 29 38 chr4 41824139 41824946 -160503401 - L1ME1 LINE L1 -5 6230 5432 1118 238 44 47 chr4 41825054 41825437 -160502910 - L1ME1 LINE L1 -866 5349 4968 1104 301 48 15 chr4 41825457 41825918 -160502429 - L1ME1 LINE L1 -5885 511 36 43919 46 5 2 chr4 41826093 41832228 -160496119 - L1PA4 LINE L1 0 6155 1 668 75 25 108 chr4 41832359 41832436 -160495911 - L1PA13 LINE L1 -11 6152 6087 2276 105 3 7 chr4 41832436 41832742 -160495605 - AluSx SINE Alu -7 305 1 668 75 25 108 chr4 41832742 41832784 -160495563 - L1PA13 LINE L1 -76 6087 6043 198 267 100 0 chr4 41832962 41833022 -160495325 - L2 LINE L2 -228 3044 2979 543 240 8 0 chr4 41833429 41833550 -160494797 + Charlie8 DNA MER1_type 103 224 -2193 783 243 85 0 chr4 41833565 41833754 -160494593 - MER3 DNA MER1_type -4 205 1 237 33 0 0 chr4 41833950 41833980 -160494367 + (TG)n Simple_repeat Simple_repeat 2 31 0 327 78 0 0 chr4 41834425 41834476 -160493871 + (CA)n Simple_repeat Simple_repeat 2 52 0 214 280 93 5 chr4 41835125 41835248 -160493099 + MIR SINE MIR 19 160 -48 533 151 0 0 chr4 41835357 41835430 -160492917 + AluJ/FLAM SINE Alu 2 74 -238 261 0 0 0 chr4 41835453 41835482 -160492865 + (GAA)n Simple_repeat Simple_repeat 2 30 0 264 59 0 0 chr4 41835558 41835592 -160492755 + (A)n Simple_repeat Simple_repeat 1 34 0 264 256 12 37 chr4 41835601 41835683 -160492664 - MER5A DNA MER1_type 0 189 110 594 275 82 37 chr4 41835977 41836221 -160492126 + MER112 DNA MER1_type 2 256 0 675 278 9 54 chr4 41836976 41837199 -160491148 + MIR SINE MIR 28 240 -22 197 328 0 17 chr4 41837165 41837223 -160491124 + L2 LINE L2 3212 3268 -4 * 241 324 19 9 chr4 41837914 41838022 -160490325 + (TATG)n Simple_repeat Simple_repeat 4 112 0 1975 72 68 8 chr4 41838689 41838953 -160489394 + AluSp SINE Alu 6 285 -28 792 277 50 4 chr4 41839167 41839409 -160488938 + MIR SINE MIR 10 262 0 2375 145 45 5 chr4 41839440 41839840 -160488507 - MSTA LTR MaLR -1 427 12 224 170 21 0 chr4 41839841 41839888 -160488459 + (TTA)n Simple_repeat Simple_repeat 3 50 0 1127 191 30 0 chr4 41840189 41840388 -160487959 - MER3 DNA MER1_type -4 205 1 634 272 6 12 chr4 41840702 41840875 -160487472 + MER112 DNA MER1_type 4 175 -85 2317 136 19 32 chr4 41840914 41841283 -160487064 - THE1B LTR MaLR 0 364 1 12574 88 11 1 chr4 41841283 41842848 -160485499 - THE1B-int LTR MaLR 0 1580 1 2547 106 19 32 chr4 41842848 41843217 -160485130 - THE1B LTR MaLR 0 364 1 298 176 81 27 chr4 41843217 41843291 -160485056 + MER112 DNA MER1_type 183 260 0 879 264 63 21 chr4 41843295 41843579 -160484768 - MER102a DNA MER1_type -2 328 33 519 169 8 85 chr4 41844192 41844322 -160484025 - L1MD3 LINE L1 0 7995 7876 1041 218 0 36 chr4 41844324 41844544 -160483803 - MSTD LTR MaLR -1 395 184 2176 126 0 0 chr4 41844544 41844854 -160483493 - AluY SINE Alu -1 310 1 865 166 0 21 chr4 41844857 41845002 -160483345 - AluJo SINE Alu -170 142 1 1118 152 27 0 chr4 41845003 41845187 -160483160 - MSTD LTR MaLR -205 191 3 657 192 26 51 chr4 41845189 41845345 -160483002 - L1MD3 LINE L1 -116 7879 7728 192 308 0 0 chr4 41845568 41845620 -160482727 + L2 LINE L2 3254 3305 -8 2117 184 26 3 chr4 41845760 41846141 -160482206 - MLT1B LTR MaLR 0 390 1 658 314 31 23 chr4 41846574 41846924 -160481423 + MLT1F-int LTR MaLR 248 600 -771 682 290 59 108 chr4 41847131 41847838 -160480509 + MLT1F-int LTR MaLR 699 1371 0 511 291 29 23 chr4 41847839 41848011 -160480336 + MLT1F LTR MaLR 2 174 -368 10629 42 2 13 chr4 41848011 41849508 -160478839 + L1P2 LINE L1 4085 5565 -590 3388 243 38 30 chr4 41849813 41850348 -160477999 - MER21B LTR ERV1 -4 859 313 2255 88 3 36 chr4 41850348 41850653 -160477694 - AluY SINE Alu -16 295 1 3388 243 38 30 chr4 41850653 41850927 -160477420 - MER21B LTR ERV1 -550 313 43 345 291 0 0 chr4 41850925 41851004 -160477343 - MER21B LTR ERV1 -769 94 16 * 261 278 78 33 chr4 41851001 41851091 -160477256 - MER21B LTR ERV1 -758 105 12 * 5489 229 83 51 chr4 41851383 41853044 -160475303 + L1M3e LINE L1 7 1612 -5494 201 39 0 0 chr4 41853044 41853070 -160475277 + (CAA)n Simple_repeat Simple_repeat 1 26 0 5489 229 83 51 chr4 41853070 41855255 -160473092 + L1M3e LINE L1 1612 4783 -2323 1216 243 44 53 chr4 41855255 41855804 -160472543 - MER39 LTR ERV1 0 648 1 2294 181 38 15 chr4 41855804 41856280 -160472067 + L1M3e LINE L1 4780 5266 -1840 410 177 156 10 chr4 41856325 41856421 -160471926 - MER52A LTR ERV1 -743 1012 903 3062 220 173 42 chr4 41856423 41857400 -160470947 - MER52A LTR ERV1 -650 1105 1 2424 120 18 23 chr4 41857400 41857792 -160470555 + L1MA9 LINE L1 5914 6303 -9 5049 109 86 47 chr4 41858121 41858912 -160469435 + LTR12 LTR ERV1 5 826 0 2368 83 0 13 chr4 41858996 41859297 -160469050 - AluY SINE Alu -14 297 1 2155 110 0 38 chr4 41859504 41859821 -160468526 + AluSx SINE Alu 1 305 -7 1364 145 8 2 chr4 41860651 41860907 -160467440 + AluJo SINE Alu 1 300 -12 722 260 12 85 chr4 41861663 41861921 -160466426 - MIR SINE MIR -21 241 3 1853 213 83 120 chr4 41862021 41862230 -160466117 - L1MC5 LINE L1 -61 7900 7685 296 105 0 0 chr4 41862230 41862268 -160466079 - U2 snRNA snRNA -150 38 1 1853 213 83 120 chr4 41862268 41863078 -160465269 - L1MC5 LINE L1 -276 7685 6883 777 253 23 32 chr4 41863247 41863468 -160464879 + MIR SINE MIR 41 259 -3 345 275 57 82 chr4 41863529 41863845 -160464502 - L1ME4a LINE L1 -193 5928 5621 186 133 0 0 chr4 41864122 41864152 -160464195 + (A)n Simple_repeat Simple_repeat 1 30 0 219 300 67 33 chr4 41864335 41864425 -160463922 + MER91A DNA MER1_type 48 140 -56 201 213 49 98 chr4 41864455 41864516 -160463831 + MER91A DNA MER1_type 126 183 -13 314 279 163 58 chr4 41864794 41864984 -160463363 + MIR SINE MIR 5 214 -48 1353 225 64 89 chr4 41865811 41866482 -160461865 + L1MC5 LINE L1 7277 7930 -31 343 296 178 0 chr4 41866544 41866679 -160461668 + MIR SINE MIR 104 262 0 265 267 178 0 chr4 41867134 41867235 -160461112 + MIR SINE MIR 36 154 -108 647 271 168 19 chr4 41867257 41867471 -160460876 + MIR SINE MIR 17 262 0 1467 106 101 5 chr4 41869990 41870197 -160458150 + MER30 DNA MER1_type 4 230 0 198 306 32 0 chr4 41870217 41870279 -160458068 + MIR3 SINE MIR 111 174 -34 712 311 65 34 chr4 41870310 41870693 -160457654 + LTR16A LTR ERVL 56 450 0 500 213 55 24 chr4 41870693 41870808 -160457539 - LTR67 LTR ERVL -43 514 396 281 253 0 55 chr4 41870840 41870931 -160457416 - LTR67 LTR ERVL -467 90 5 1094 283 164 36 chr4 41871173 41872207 -160456140 + L2 LINE L2 2127 3312 -1 1301 201 88 64 chr4 41872281 41872688 -160455659 + Charlie4a DNA MER1_type 22 438 -70 1677 176 15 4 chr4 41872688 41872960 -160455387 + AluJb SINE Alu 1 275 -37 195 42 0 0 chr4 41872972 41872996 -160455351 + (TAA)n Simple_repeat Simple_repeat 2 25 0 244 133 44 0 chr4 41873079 41873124 -160455223 - MER3 DNA MER1_type 0 209 163 1501 167 0 44 chr4 41873208 41873483 -160454864 - AluJo SINE Alu -49 263 1 788 195 0 38 chr4 41873483 41873642 -160454705 - MER3 DNA MER1_type -29 180 28 1565 175 113 64 chr4 41875228 41875663 -160452684 + MLT1C LTR MaLR 6 461 -6 960 217 74 57 chr4 41877164 41877220 -160451127 + MLT1E LTR MaLR 1 55 -538 2342 64 0 3 chr4 41877220 41877538 -160450809 - AluY SINE Alu 0 317 1 960 217 74 57 chr4 41877538 41877951 -160450396 + MLT1E LTR MaLR 55 576 -17 667 261 16 96 chr4 41878280 41878471 -160449876 + L1ME4a LINE L1 5531 5687 -434 4944 131 7 4 chr4 41878471 41879206 -160449141 - L1PB4 LINE L1 -5 6151 5415 667 261 16 96 chr4 41879206 41879336 -160449011 + L1ME4a LINE L1 5687 5826 -295 899 161 19 37 chr4 41879346 41879508 -160448839 + FRAM SINE Alu 4 162 -14 304 285 139 30 chr4 41879665 41879830 -160448517 + L1ME4a LINE L1 5935 6117 -4 195 250 21 0 chr4 41880535 41880583 -160447764 - L2 LINE L2 -23 3249 3201 1448 226 33 9 chr4 41881037 41881374 -160446973 - LTR40b LTR ERVL -117 345 1 480 242 17 0 chr4 41881695 41881815 -160446532 - MIR SINE MIR -36 226 105 1987 123 0 46 chr4 41881911 41882235 -160446112 - AluSx SINE Alu -3 309 1 3811 135 25 22 chr4 41882301 41882900 -160445447 - MER7C DNA MER2_type -1 601 1 231 268 49 12 chr4 41883081 41883163 -160445184 + L2 LINE L2 3227 3311 -2 799 267 44 24 chr4 41883581 41883832 -160444515 - MIR SINE MIR -1 261 6 732 246 116 54 chr4 41884141 41884564 -160443783 + L1MC4 LINE L1 7594 8042 0 626 301 92 19 chr4 41884902 41885108 -160443239 + MIR SINE MIR 33 253 -9 186 133 0 0 chr4 41885838 41885868 -160442479 + (A)n Simple_repeat Simple_repeat 1 30 0 274 343 29 9 chr4 41886174 41886279 -160442068 - MIR SINE MIR -65 143 37 732 176 6 16 chr4 41889217 41889399 -160438948 + GA-rich Low_complexity Low_complexity 1 180 0 659 242 82 10 chr4 41889716 41889910 -160438437 + MIR SINE MIR 30 237 -25 188 301 41 14 chr4 41890160 41890233 -160438114 - MIR SINE MIR -154 108 34 957 81 16 0 chr4 41890694 41890817 -160437530 - AluSg/x SINE Alu -12 300 176 375 281 125 27 chr4 41891177 41891401 -160436946 - L1ME4a LINE L1 -29 6092 5847 904 254 61 20 chr4 41891422 41891717 -160436630 - L1ME4a LINE L1 -325 5796 5490 22 35 0 0 chr4 41891756 41891785 -160436562 + AT_rich Low_complexity Low_complexity 1 29 0 2363 111 60 20 chr4 41891794 41892144 -160436203 - THE1B LTR MaLR 0 364 1 440 256 130 72 chr4 41892179 41892386 -160435961 - MIR SINE MIR -14 248 30 505 302 31 9 chr4 41892461 41892686 -160435661 - LTR33 LTR ERVL 0 521 292 621 288 7 0 chr4 41892761 41892900 -160435447 - LTR33 LTR ERVL -356 165 26 248 315 33 0 chr4 41892991 41893083 -160435264 + MIR SINE MIR 168 262 0 483 275 67 96 chr4 41893251 41893470 -160434877 + MLT1J1 LTR MaLR 41 244 -202 2204 145 85 18 chr4 41893470 41893871 -160434476 + MSTA LTR MaLR 1 428 0 483 275 67 96 chr4 41893871 41894069 -160434278 + MLT1J1 LTR MaLR 244 446 0 2657 150 41 5 chr4 41894178 41894591 -160433756 + MSTA LTR MaLR 1 428 0 9707 165 43 11 chr4 41894591 41896003 -160432344 + MSTA-int LTR MaLR 1 1471 -180 2151 122 0 13 chr4 41896003 41896307 -160432040 - AluSg SINE Alu -10 300 1 9707 165 43 11 chr4 41896307 41896494 -160431853 + MSTA-int LTR MaLR 1471 1651 0 2584 138 59 5 chr4 41896494 41896900 -160431447 + MSTA LTR MaLR 1 428 0 318 252 34 5 chr4 41897077 41897222 -160431125 + MIR SINE MIR 21 245 -17 230 182 18 55 chr4 41897492 41897547 -160430800 + MIR SINE MIR 21 73 -189 552 42 0 0 chr4 41897816 41897887 -160430460 + (TGGA)n Simple_repeat Simple_repeat 4 74 0 2345 71 10 3 chr4 41898140 41898437 -160429910 + AluY SINE Alu 1 299 -12 189 229 229 0 chr4 41898611 41898672 -160429675 - MIR SINE MIR -23 239 165 321 297 7 11 chr4 41898711 41898851 -160429496 + MIR SINE MIR 19 214 -48 856 149 0 154 chr4 41898907 41899115 -160429232 - MER5B DNA MER1_type -1 177 2 266 236 42 29 chr4 41899499 41899604 -160428743 + MIR SINE MIR 43 148 -71 1922 118 14 0 chr4 41900166 41900445 -160427902 - AluSx SINE Alu -29 283 1 2111 151 106 22 chr4 41900482 41900679 -160427668 - L1MA9 LINE L1 -444 5868 5689 245 27 54 0 chr4 41900679 41900716 -160427631 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 2111 151 106 22 chr4 41900716 41900922 -160427425 - L1MA9 LINE L1 -623 5689 5431 1408 240 10 30 chr4 41900924 41901359 -160426988 - L1MB2 LINE L1 -259 5912 5511 35 54 0 0 chr4 41955084 41955140 -160373207 + AT_rich Low_complexity Low_complexity 1 56 0 620 261 63 4 chr4 41955196 41955449 -160372898 + Charlie2 DNA MER1_type 2222 2489 -373 1069 131 0 12 chr4 41955450 41955610 -160372737 + AluSx SINE Alu 1 158 -154 498 114 0 0 chr4 41955611 41955690 -160372657 + AluSc SINE Alu 231 309 0 1302 246 16 8 chr4 41955704 41956078 -160372269 + Charlie2 DNA MER1_type 2486 2862 0 211 256 39 39 chr4 41956100 41956178 -160372169 - MER5B DNA MER1_type -96 82 5 2299 131 56 8 chr4 41956391 41956749 -160371598 + THE1C LTR MaLR 1 375 0 2628 186 15 6 chr4 41957004 41957531 -160370816 + L1 LINE L1 4858 5389 -757 476 271 101 29 chr4 41958095 41958302 -160370045 + MIR SINE MIR 31 252 -10 290 257 0 14 chr4 41958505 41958575 -160369772 + Tigger6a DNA MER2_type 5 73 -1010 5056 173 31 40 chr4 41958732 41959091 -160369256 + Tigger6a DNA MER2_type 85 446 -1151 1173 199 82 69 chr4 41959091 41959382 -160368965 - AluJo SINE Alu -6 296 2 5056 173 31 40 chr4 41959382 41959897 -160368450 + Tigger6a DNA MER2_type 446 951 -646 1627 179 42 3 chr4 41959897 41960182 -160368165 - AluJo SINE Alu -16 296 1 5056 173 31 40 chr4 41960182 41960313 -160368034 + Tigger6a DNA MER2_type 951 1082 -1 926 174 64 55 chr4 41960768 41960987 -160367360 - AluSg/x SINE Alu -1 309 89 819 86 0 0 chr4 41961087 41961192 -160367155 - AluSp SINE Alu -208 105 1 1966 136 3 23 chr4 41962438 41962747 -160365600 - AluSq SINE Alu -10 303 1 957 171 34 49 chr4 41963135 41963340 -160365007 + MER20 DNA MER1_type 18 219 0 294 247 69 81 chr4 41963340 41963514 -160364833 + HAL1 LINE L1 22 193 -2314 1984 256 166 50 chr4 41963781 41964928 -160363419 + HAL1 LINE L1 202 1481 -1026 425 321 67 35 chr4 41964945 41965140 -160363207 + L1MCc LINE L1 17 204 -6219 1586 192 97 32 chr4 41965140 41965479 -160362868 - MLT1A1 LTR MaLR 0 365 5 425 321 67 35 chr4 41965479 41965734 -160362613 + L1MCc LINE L1 204 481 -5942 342 0 0 0 chr4 41966217 41966255 -160362092 + (CA)n Simple_repeat Simple_repeat 2 39 0 1432 234 63 52 chr4 41966461 41967013 -160361334 + L1M4 LINE L1 2132 2689 -3457 2122 128 80 80 chr4 41968667 41968955 -160359392 - MLT1B LTR MaLR 0 390 100 2223 122 0 0 chr4 41968955 41969251 -160359096 - AluSc SINE Alu -13 296 1 2122 128 80 80 chr4 41969251 41969352 -160358995 - MLT1B LTR MaLR -289 101 1 2494 87 3 0 chr4 41969855 41970167 -160358180 + AluSp SINE Alu 1 313 0 614 265 148 22 chr4 41970687 41970910 -160357437 - MIR SINE MIR 0 262 12 454 274 95 12 chr4 41970910 41971078 -160357269 + MIR SINE MIR 40 221 -41 279 296 41 20 chr4 41971116 41971214 -160357133 + L2 LINE L2 3181 3280 -33 197 309 181 0 chr4 41971237 41971331 -160357016 + L3b LINE CR1 1436 1546 -37 1809 124 35 0 chr4 41971343 41971600 -160356747 - AluSg1 SINE Alu -9 300 35 500 254 146 18 chr4 41971713 41971993 -160356354 + L1ME4a LINE L1 5767 6082 -39 184 289 168 54 chr4 41972316 41972465 -160355882 - L2 LINE L2 -99 3173 3008 1665 178 43 65 chr4 41972926 41973324 -160355023 + MLT1C LTR MaLR 66 454 -13 26 0 0 0 chr4 41973802 41973828 -160354519 + AT_rich Low_complexity Low_complexity 1 26 0 2233 160 9 98 chr4 41973855 41974306 -160354041 - MLT2D LTR ERVL -1 413 3 3777 138 8 7 chr4 41974332 41974921 -160353426 - L1MB3 LINE L1 -1 6182 5593 544 127 0 0 chr4 41974966 41975278 -160353069 + AluSx SINE Alu 2 313 0 709 281 115 66 chr4 41975400 41975912 -160352435 + MLT1L LTR MaLR 8 544 -71 399 256 41 16 chr4 41976026 41976147 -160352200 - LTR67 LTR ERVL 0 557 434 689 163 22 114 chr4 41976361 41976416 -160351931 - MER96 DNA MER1_type? -8 167 109 2508 81 0 3 chr4 41976416 41976726 -160351621 + AluY SINE Alu 1 309 -2 689 163 22 114 chr4 41976726 41976854 -160351493 - MER96 DNA MER1_type? -66 109 1 563 299 104 43 chr4 41979711 41980056 -160348291 + MLT1L LTR MaLR 246 611 -4 926 215 62 5 chr4 41980066 41980275 -160348072 + MLT1H LTR MaLR 14 234 -315 692 207 0 90 chr4 41980778 41980903 -160347444 - MER5B DNA MER1_type -5 173 69 2034 130 10 3 chr4 41980903 41981195 -160347152 - AluSx SINE Alu -18 294 1 692 207 0 90 chr4 41981195 41981257 -160347090 - MER5B DNA MER1_type -109 69 3 451 294 114 35 chr4 41982197 41982425 -160345922 - MIR SINE MIR 0 262 17 4843 180 24 33 chr4 41983046 41983502 -160344845 + L1MC3 LINE L1 6804 7263 -522 2336 115 72 26 chr4 41983502 41983849 -160344498 + THE1B LTR MaLR 1 363 -1 4843 180 24 33 chr4 41983849 41984383 -160343964 + L1MC3 LINE L1 7263 7785 0 1854 154 76 60 chr4 41984436 41984818 -160343529 + MLT1B LTR MaLR 1 388 -2 2388 77 3 3 chr4 41985175 41985473 -160342874 + AluY SINE Alu 1 298 -13 897 173 0 0 chr4 41985632 41985765 -160342582 - FLAM_C SINE Alu 0 133 1 226 360 0 0 chr4 41986728 41986803 -160341544 + CT-rich Low_complexity Low_complexity 3 77 0 2092 126 10 0 chr4 41987462 41987756 -160340591 + AluSx SINE Alu 1 297 -15 387 261 227 30 chr4 41987841 41988044 -160340303 + MIR SINE MIR 17 259 -3 356 255 74 40 chr4 41988678 41988840 -160339507 + MIR SINE MIR 22 186 -37 336 340 61 14 chr4 41988979 41989126 -160339221 + L2 LINE L2 3117 3270 -2 340 247 75 172 chr4 41989539 41989911 -160338436 - L2 LINE L2 -1 3271 2936 2215 80 0 14 chr4 41989929 41990241 -160338106 + AluY SINE Alu 1 308 0 1921 96 4 15 chr4 41990772 41991068 -160337279 + AluY SINE Alu 16 308 0 2047 166 32 56 chr4 41991540 41991914 -160336433 + MLT1A1 LTR MaLR 1 365 0 713 194 26 99 chr4 41992542 41992627 -160335720 - MER45A DNA AcHobo -1404 177 112 2244 115 0 3 chr4 41992627 41992940 -160335407 + AluSx SINE Alu 1 312 0 713 194 26 99 chr4 41992940 41993045 -160335302 - MER45A DNA AcHobo -1469 112 1 429 350 75 31 chr4 41993065 41993451 -160334896 - L2 LINE L2 -57 3215 2813 1831 142 10 23 chr4 41994583 41994893 -160333454 + AluJo SINE Alu 1 306 -6 856 202 21 21 chr4 41995448 41995636 -160332711 - MSTB LTR MaLR -48 378 191 1801 65 0 0 chr4 41995639 41995856 -160332491 - L1PA8 LINE L1 0 6172 5956 235 234 252 19 chr4 41995893 41996000 -160332347 - MIR3 SINE MIR -28 180 49 687 209 105 0 chr4 41996330 41996483 -160331864 + MER3 DNA MER1_type 1 122 -87 1972 158 54 36 chr4 41997399 41997944 -160330403 + MLT2A2 LTR ERVL 1 554 0 232 296 157 17 chr4 41998589 41998704 -160329643 + MIR3 SINE MIR 30 160 -48 2426 110 27 0 chr4 41998807 41999144 -160329203 - THE1B LTR MaLR 0 364 19 2147 154 26 6 chr4 42000454 42000805 -160327542 + MLT1A1 LTR MaLR 1 358 -7 192 292 135 0 chr4 42001003 42001092 -160327255 + L2 LINE L2 3208 3308 -5 280 264 109 45 chr4 42001733 42001843 -160326504 + MLT1J LTR MaLR 382 498 -13 492 302 80 31 chr4 42001881 42002106 -160326241 + MIR SINE MIR 25 260 -2 2144 121 0 3 chr4 42002826 42003111 -160325236 + AluSx SINE Alu 1 286 -26 243 0 0 0 chr4 42003111 42003138 -160325209 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 2144 121 0 3 chr4 42003138 42003157 -160325190 + AluSx SINE Alu 286 304 -8 881 296 46 72 chr4 42003634 42003824 -160324523 - MLT1K LTR MaLR -23 565 372 2192 115 0 3 chr4 42003824 42004129 -160324218 + AluSx SINE Alu 9 312 0 881 296 46 72 chr4 42004129 42004481 -160323866 - MLT1K LTR MaLR -216 372 37 409 276 20 53 chr4 42004816 42004916 -160323431 + MIR SINE MIR 3 98 -164 16439 119 33 7 chr4 42004916 42006037 -160322310 - Tigger1 DNA MER2_type -1 2417 1327 2092 103 7 7 chr4 42006037 42006329 -160322018 + AluSq SINE Alu 22 313 0 16439 119 33 7 chr4 42006329 42007563 -160320784 - Tigger1 DNA MER2_type -1091 1327 1 409 276 20 53 chr4 42007563 42007614 -160320733 + MIR SINE MIR 98 149 -113 2422 43 0 3 chr4 42007810 42008092 -160320255 - AluY SINE Alu -14 297 17 21 0 0 0 chr4 42008692 42008713 -160319634 + AT_rich Low_complexity Low_complexity 1 21 0 6273 91 9 11 chr4 42008731 42009597 -160318750 - L1MA2 LINE L1 0 6304 5441 430 71 0 0 chr4 42009693 42009749 -160318598 - L1MA2 LINE L1 -871 5431 5376 260 316 205 0 chr4 42009852 42010023 -160318324 - Charlie2 DNA MER1_type -2611 251 46 223 254 30 15 chr4 42010046 42010113 -160318234 - MER5B DNA MER1_type -110 68 1 514 304 46 59 chr4 42010584 42011147 -160317200 + L1MEd LINE L1 564 1119 -5000 222 270 7 124 chr4 42011424 42011525 -160316822 + L2 LINE L2 3152 3235 -78 2359 113 33 33 chr4 42011525 42011888 -160316459 + THE1B LTR MaLR 1 363 -1 222 270 7 124 chr4 42011888 42011923 -160316424 + L2 LINE L2 3235 3272 -41 528 297 67 33 chr4 42012009 42012309 -160316038 + HAL1 LINE L1 1416 1725 -782 228 178 22 0 chr4 42012928 42012973 -160315374 + CT-rich Low_complexity Low_complexity 2 47 0 375 322 70 72 chr4 42013048 42013082 -160315265 + L1ME4a LINE L1 5454 5487 -634 2069 116 19 26 chr4 42013082 42013393 -160314954 + AluSx SINE Alu 1 309 -3 375 322 70 72 chr4 42013393 42013814 -160314533 + L1ME4a LINE L1 5487 5908 -213 2008 129 51 46 chr4 42013942 42014109 -160314238 - THE1C LTR MaLR 0 375 210 210 37 0 0 chr4 42014109 42014136 -160314211 + (GA)n Simple_repeat Simple_repeat 1 27 0 2008 151 0 3 chr4 42014144 42014442 -160313905 + AluSx SINE Alu 3 299 -13 2008 129 51 46 chr4 42014442 42014638 -160313709 - THE1C LTR MaLR -171 204 1 319 228 68 74 chr4 42015172 42015334 -160313013 - L1MC5 LINE L1 -30 7931 7771 8766 151 12 18 chr4 42015367 42017130 -160311217 - L1PB1 LINE L1 -5 6146 4399 234 0 0 0 chr4 42017130 42017156 -160311191 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 8766 151 12 18 chr4 42017156 42017974 -160310373 - L1PB1 LINE L1 -1752 4399 3577 685 223 89 70 chr4 42018239 42018734 -160309613 + MLT1G1 LTR MaLR 1 571 -19 279 272 43 75 chr4 42018749 42019054 -160309293 - L1MC5 LINE L1 -332 7629 7335 740 190 212 11 chr4 42019054 42019238 -160309109 - MER58A DNA MER1_type 0 224 4 321 265 54 121 chr4 42019261 42019800 -160308547 + HAL1 LINE L1 818 1320 -1187 1634 152 0 73 chr4 42019823 42020125 -160308222 - AluJo SINE Alu -20 292 13 187 301 151 0 chr4 42020780 42020873 -160307474 - L2 LINE L2 -33 3239 3133 292 310 82 29 chr4 42020920 42021091 -160307256 + MER5A DNA MER1_type 7 186 -3 513 217 7 63 chr4 42022300 42022408 -160305939 - MIR SINE MIR -60 202 102 2160 134 67 92 chr4 42022408 42022842 -160305505 + MSTA LTR MaLR 2 424 -4 513 217 7 63 chr4 42022842 42022876 -160305471 - MIR SINE MIR -160 102 68 419 259 110 53 chr4 42022886 42023114 -160305233 - MLT1K LTR MaLR -19 569 329 1576 228 97 14 chr4 42023697 42024168 -160304179 - LTR33A LTR ERVL -7 516 38 258 240 40 0 chr4 42024204 42024279 -160304068 - L1ME4a LINE L1 -11 6110 6033 2556 56 0 0 chr4 42025497 42025801 -160302546 - AluY SINE Alu -7 304 1 240 143 0 0 chr4 42026269 42026311 -160302036 + (TG)n Simple_repeat Simple_repeat 2 43 0 201 39 0 0 chr4 42027064 42027090 -160301257 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 183 42 0 0 chr4 42027469 42027493 -160300854 + (GA)n Simple_repeat Simple_repeat 1 24 0 259 257 59 40 chr4 42028048 42028149 -160300198 - L2 LINE L2 -1 3312 3210 243 341 16 40 chr4 42028212 42028338 -160300009 + MIR3 SINE MIR 75 197 -11 233 224 0 0 chr4 42029344 42029393 -160298954 - MIR SINE MIR -48 214 166 22 0 0 0 chr4 42029790 42029812 -160298535 + AT_rich Low_complexity Low_complexity 1 22 0 2293 105 0 16 chr4 42030397 42030703 -160297644 + AluSx SINE Alu 1 301 -11 357 305 133 59 chr4 42032335 42032741 -160295606 - L2 LINE L2 -5 3267 2832 26 30 0 0 chr4 42032817 42032850 -160295497 + AT_rich Low_complexity Low_complexity 1 33 0 380 272 129 90 chr4 42033019 42033398 -160294949 - MLT1K LTR MaLR -3 585 192 2341 67 3 3 chr4 42034317 42034616 -160293731 - AluY SINE Alu -12 299 1 189 339 107 33 chr4 42034779 42034900 -160293447 + L2 LINE L2 3139 3268 -4 243 0 0 0 chr4 42034900 42034927 -160293420 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1996 105 84 7 chr4 42034995 42035281 -160293066 - AluSg SINE Alu -2 308 1 326 282 81 32 chr4 42035414 42035538 -160292809 - L2 LINE L2 -2 3270 3141 1813 139 0 8 chr4 42036453 42036719 -160291628 + AluSx SINE Alu 35 298 -14 2260 100 23 0 chr4 42036827 42037127 -160291220 - AluSg SINE Alu -3 307 1 180 27 81 0 chr4 42037254 42037291 -160291056 + A-rich Low_complexity Low_complexity 2 41 0 1063 32 0 8 chr4 42037948 42038073 -160290274 + L1PA5 LINE L1 6028 6151 -3 31 0 0 0 chr4 42038073 42038104 -160290243 + AT_rich Low_complexity Low_complexity 1 31 0 2140 117 3 0 chr4 42038302 42038602 -160289745 - AluY SINE Alu -10 301 1 1736 103 9 0 chr4 42039612 42039845 -160288502 - AluSg SINE Alu -75 235 1 2174 130 0 3 chr4 42039910 42040218 -160288129 - AluSx SINE Alu -5 307 1 216 324 171 41 chr4 42041345 42041515 -160286832 - MIR SINE MIR -6 256 65 834 182 8 0 chr4 42041620 42041752 -160286595 - FLAM_A SINE Alu 0 133 1 1257 271 67 23 chr4 42041890 42042325 -160286022 - MER69 DNA AcHobo -1933 593 140 2509 183 21 30 chr4 42042328 42042698 -160285649 + MER6A DNA MER2_type 1 366 -499 2372 66 7 3 chr4 42042698 42043001 -160285346 - AluY SINE Alu -7 304 1 2509 183 21 30 chr4 42043001 42043156 -160285191 + MER6A DNA MER2_type 366 521 -84 1845 147 25 0 chr4 42043256 42043541 -160284806 - AluSx SINE Alu -20 292 1 186 313 127 81 chr4 42043823 42043924 -160284423 + L3 LINE CR1 919 1014 -563 2174 132 0 0 chr4 42043924 42044234 -160284113 - AluSx SINE Alu -2 310 1 186 313 127 81 chr4 42044234 42044448 -160283899 + L3 LINE CR1 1014 1256 -321 1015 180 193 30 chr4 42044448 42044743 -160283604 - MER2 DNA MER2_type 0 344 2 186 313 127 81 chr4 42044743 42044797 -160283550 + L3 LINE CR1 1256 1306 -271 661 189 84 29 chr4 42044858 42045174 -160283173 - MER93b LTR ERV1 0 402 8 4985 142 10 16 chr4 42045931 42046701 -160281646 - LTR39 LTR ERV1 0 783 18 1123 114 0 0 chr4 42046810 42046959 -160281388 - AluSg SINE Alu -161 149 1 357 221 103 81 chr4 42047586 42047722 -160280625 - L2 LINE L2 0 3313 3175 23 33 0 0 chr4 42047973 42048003 -160280344 + AT_rich Low_complexity Low_complexity 1 30 0 1481 214 169 38 chr4 42048765 42049261 -160279086 + MER34B LTR ERV1 5 565 0 2239 129 3 0 chr4 42049286 42049597 -160278750 + AluSx SINE Alu 1 312 0 543 345 73 0 chr4 42050219 42050451 -160277896 - MIR SINE MIR 0 262 14 1709 112 50 8 chr4 42050495 42050755 -160277592 + AluSx SINE Alu 23 293 -19 258 32 0 0 chr4 42051128 42051159 -160277188 + (TG)n Simple_repeat Simple_repeat 1 31 0 2188 91 0 21 chr4 42051200 42051485 -160276862 + AluSg SINE Alu 1 279 -31 2342 101 0 0 chr4 42051511 42051817 -160276530 + AluSg1 SINE Alu 1 306 -3 1563 101 55 0 chr4 42051940 42052158 -160276189 + MER30 DNA MER1_type 1 230 0 2275 97 7 10 chr4 42052177 42052485 -160275862 + AluSx SINE Alu 1 307 -5 236 296 0 39 chr4 42052636 42052726 -160275621 + MER5A DNA MER1_type 84 168 -10 251 229 0 57 chr4 42052740 42052810 -160275537 + MER69 DNA AcHobo 1 66 -1160 254 94 0 0 chr4 42052857 42052889 -160275458 - MER6 DNA MER2_type 0 865 834 1022 159 0 6 chr4 42052991 42053520 -160274827 + (TGG)n Simple_repeat Simple_repeat 1 526 0 451 327 32 36 chr4 42053659 42053879 -160274468 + L2 LINE L2 3054 3272 0 192 200 0 0 chr4 42053901 42053946 -160274401 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 241 299 231 0 chr4 42054304 42054421 -160273926 - MIR SINE MIR -91 171 28 829 264 98 65 chr4 42054471 42054899 -160273448 - MLT1J1 LTR MaLR -4 442 1 421 285 143 72 chr4 42055123 42055443 -160272904 + MLT1K LTR MaLR 131 490 -98 2154 120 10 0 chr4 42055443 42055742 -160272605 - AluSx SINE Alu -10 302 1 421 285 143 72 chr4 42055742 42055849 -160272498 + MLT1K LTR MaLR 490 588 0 234 62 0 0 chr4 42055958 42055990 -160272357 + (TC)n Simple_repeat Simple_repeat 1 32 0 785 183 58 62 chr4 42056019 42056227 -160272120 + MLT1B LTR MaLR 19 225 -165 198 191 0 0 chr4 42056338 42056380 -160271967 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 195 42 0 0 chr4 42056437 42056461 -160271886 + (TG)n Simple_repeat Simple_repeat 2 25 0 2222 60 13 57 chr4 42056680 42056995 -160271352 + AluSc SINE Alu 1 301 -8 341 277 125 9 chr4 42057004 42057116 -160271231 + MIR SINE MIR 45 169 -93 1507 55 0 4 chr4 42057117 42057328 -160271019 + L1PA5 LINE L1 5701 5906 -225 2182 91 19 60 chr4 42063093 42063411 -160264936 - AluSg SINE Alu -5 305 1 581 248 52 7 chr4 42063651 42063804 -160264543 - MIR SINE MIR -2 260 101 226 138 52 52 chr4 42063804 42063862 -160264485 - LTR31 LTR ERV1 -82 537 480 242 311 0 19 chr4 42064145 42064248 -160264099 - L1MC4 LINE L1 -1328 6714 6614 308 275 0 22 chr4 42064326 42064417 -160263930 + L1MC4 LINE L1 6614 6702 -1340 1859 166 0 0 chr4 42064425 42064715 -160263632 - AluJb SINE Alu -22 290 1 3811 221 75 20 chr4 42064775 42066371 -160261976 - L1ME1 LINE L1 -78 6088 4398 249 315 33 11 chr4 42066376 42066468 -160261879 + L1MDb LINE L1 240 333 -5786 398 289 147 0 chr4 42066476 42066701 -160261646 + L1MEd LINE L1 601 858 -5261 291 156 0 0 chr4 42066793 42066838 -160261509 - Alu SINE Alu -257 46 2 2278 105 0 0 chr4 42066959 42067263 -160261084 - AluSg SINE Alu -6 304 1 774 121 0 48 chr4 42067280 42067404 -160260943 - FLAM_C SINE Alu -17 126 9 2338 236 49 9 chr4 42067613 42068304 -160260043 + L1MDb LINE L1 497 1226 -4893 418 223 22 58 chr4 42068445 42068584 -160259763 + LTR16A1 LTR ERVL 324 457 0 27 0 0 0 chr4 42068708 42068735 -160259612 + AT_rich Low_complexity Low_complexity 1 27 0 312 225 79 34 chr4 42068737 42068826 -160259521 + Zaphod DNA AcHobo 3939 4031 0 946 285 51 60 chr4 42068833 42069503 -160258844 - L1ME1 LINE L1 -1773 4373 3710 2792 173 29 35 chr4 42069558 42069857 -160258490 - MER89 LTR ERV1 0 559 263 2281 101 3 0 chr4 42069857 42070153 -160258194 + AluSx SINE Alu 1 297 -15 2792 173 29 35 chr4 42070153 42070403 -160257944 - MER89 LTR ERV1 -296 263 13 501 330 62 12 chr4 42070412 42070909 -160257438 - L1ME1 LINE L1 -2510 3636 3115 21 0 0 0 chr4 42070987 42071008 -160257339 + AT_rich Low_complexity Low_complexity 1 21 0 739 40 10 30 chr4 42071055 42071155 -160257192 - L1PA5 LINE L1 0 6154 6057 2480 123 22 8 chr4 42071173 42071532 -160256815 - THE1B LTR MaLR 0 364 1 276 321 86 0 chr4 42071728 42071809 -160256538 + MER91A DNA MER1_type 109 196 0 239 328 112 34 chr4 42071932 42072368 -160255979 + L1M4 LINE L1 4786 5255 -891 1451 188 43 8 chr4 42072440 42072695 -160255652 + Tigger7 DNA MER2_type 1 264 -2223 186 118 0 0 chr4 42072695 42072729 -160255618 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 571 185 0 0 chr4 42072730 42072822 -160255525 + Tigger7 DNA MER2_type 2400 2491 0 209 226 0 19 chr4 42072951 42073004 -160255343 + GA-rich Low_complexity Low_complexity 3 54 0 2524 25 0 3 chr4 42073218 42073526 -160254821 - AluYa5 SINE Alu 0 307 1 1129 218 54 51 chr4 42073976 42074348 -160253999 - MER69B DNA AcHobo -1 1225 853 2137 123 7 0 chr4 42074348 42074650 -160253697 - AluSx SINE Alu -4 308 5 684 141 0 0 chr4 42074685 42074777 -160253570 - FLAM SINE Alu -14 129 38 229 266 16 0 chr4 42074841 42074905 -160253442 - MER69B DNA AcHobo -378 848 784 965 140 6 0 chr4 42075036 42075214 -160253133 + (CCA)n Simple_repeat Simple_repeat 2 180 0 1920 144 7 7 chr4 42075393 42075678 -160252669 - AluSx SINE Alu -17 295 11 208 296 26 26 chr4 42075711 42075826 -160252521 + (TATATG)n Simple_repeat Simple_repeat 3 117 0 * 215 337 0 12 chr4 42075762 42075848 -160252499 + (CATATA)n Simple_repeat Simple_repeat 2 86 0 1511 194 52 3 chr4 42076021 42076040 -160252307 - AluJo SINE Alu -10 302 285 305 24 24 0 chr4 42076040 42076082 -160252265 + (TTAA)n Simple_repeat Simple_repeat 2 44 0 1511 194 52 3 chr4 42076082 42076350 -160251997 - AluJo SINE Alu -27 285 1 234 217 0 0 chr4 42076420 42076466 -160251881 + Alu SINE Alu 126 171 -132 872 176 35 129 chr4 42076596 42076851 -160251496 - MIR SINE MIR 0 262 32 1739 144 28 11 chr4 42077676 42077961 -160250386 + AluJb SINE Alu 14 303 -9 1945 170 11 40 chr4 42078118 42078443 -160249904 + MLT1A1 LTR MaLR 1 315 -50 2420 45 6 22 chr4 42078443 42078757 -160249590 + AluY SINE Alu 1 309 -2 1945 170 11 40 chr4 42078757 42078807 -160249540 + MLT1A1 LTR MaLR 315 365 0 601 323 23 18 chr4 42078926 42079146 -160249201 + MIR SINE MIR 41 261 -1 379 291 93 13 chr4 42079923 42080074 -160248273 + MIR SINE MIR 73 235 -27 188 317 117 78 chr4 42080075 42080255 -160248092 - MIR SINE MIR -27 235 49 2481 59 0 0 chr4 42080669 42080973 -160247374 + AluY SINE Alu 1 304 -7 1674 180 0 0 chr4 42080980 42081287 -160247060 + AluJb SINE Alu 1 307 0 2209 84 37 0 chr4 42081363 42081660 -160246687 + AluSp SINE Alu 1 308 -5 233 160 0 100 chr4 42081969 42082019 -160246328 - MLT2D LTR ERVL 0 414 370 570 256 117 36 chr4 42082133 42082356 -160245991 + MIR SINE MIR 7 247 -15 2111 135 25 25 chr4 42082411 42082766 -160245581 + THE1A LTR MaLR 1 355 0 198 0 0 0 chr4 42083505 42083527 -160244820 + (T)n Simple_repeat Simple_repeat 1 22 0 770 172 0 0 chr4 42084001 42084123 -160244224 - FLAM_A SINE Alu -11 122 1 711 212 41 0 chr4 42085129 42085275 -160243072 - L2 LINE L2 -4 3268 3117 25 31 0 0 chr4 42086352 42086384 -160241963 + AT_rich Low_complexity Low_complexity 1 32 0 304 243 54 14 chr4 42086534 42086608 -160241739 + L1MCa LINE L1 1991 2067 -4359 * 417 211 0 42 chr4 42086546 42086641 -160241706 - L1MC4 LINE L1 -1337 6705 6615 519 192 30 63 chr4 42087041 42087172 -160241175 + MIR SINE MIR 50 175 -62 239 320 126 0 chr4 42089125 42089228 -160239119 - MIR SINE MIR -135 127 12 264 305 176 21 chr4 42091415 42091602 -160236745 + L3 LINE CR1 234 449 -1128 431 250 9 26 chr4 42091745 42091861 -160236486 - MER81 DNA DNA 0 114 1 358 353 43 0 chr4 42091901 42092017 -160236330 + L3 LINE CR1 620 740 -837 2121 101 0 0 chr4 42092421 42092708 -160235639 + AluSx SINE Alu 1 287 -25 2321 55 3 29 chr4 42093704 42094011 -160234336 - AluSp SINE Alu -14 299 1 2113 118 0 0 chr4 42094268 42094572 -160233775 + AluSx SINE Alu 3 306 -6 344 299 91 49 chr4 42095103 42095540 -160232807 - L1ME LINE L1 -324 5797 5330 396 0 0 0 chr4 42096863 42096907 -160231440 + (CA)n Simple_repeat Simple_repeat 2 45 0 191 333 56 14 chr4 42097238 42097310 -160231037 + MIR SINE MIR 2 76 -186 2007 109 7 7 chr4 42097525 42097827 -160230520 + AluSq SINE Alu 1 302 -11 443 212 23 30 chr4 42097898 42098030 -160230317 + L1MC5 LINE L1 7071 7201 -760 2135 110 0 0 chr4 42098333 42098625 -160229722 - AluSx SINE Alu -20 292 1 606 233 44 7 chr4 42103032 42103191 -160225156 - MIR SINE MIR -58 150 2 406 274 49 37 chr4 42103493 42103657 -160224690 - MIR SINE MIR -77 185 20 205 98 0 98 chr4 42103909 42103950 -160224397 + L2 LINE L2 3277 3313 0 2417 81 0 0 chr4 42104863 42105170 -160223177 - AluSq SINE Alu -6 307 1 22 35 0 0 chr4 42106603 42106632 -160221715 + AT_rich Low_complexity Low_complexity 1 29 0 207 100 0 0 chr4 42108381 42108411 -160219936 + (A)n Simple_repeat Simple_repeat 1 30 0 258 321 0 0 chr4 42109764 42109870 -160218477 + G-rich Low_complexity Low_complexity 1 106 0 21 36 0 0 chr4 42110658 42110686 -160217661 + GC_rich Low_complexity Low_complexity 1 28 0 242 123 46 46 chr4 42110749 42110814 -160217533 + (CCCCG)n Simple_repeat Simple_repeat 4 68 0 23 0 0 0 chr4 42110857 42110880 -160217467 + GC_rich Low_complexity Low_complexity 1 23 0 294 198 9 43 chr4 42110932 42111048 -160217299 + C-rich Low_complexity Low_complexity 4 115 0 22 0 0 0 chr4 42111198 42111220 -160217127 + GC_rich Low_complexity Low_complexity 1 22 0 185 0 40 0 chr4 42111233 42111258 -160217089 + (CGCGG)n Simple_repeat Simple_repeat 5 30 0 1162 160 0 62 chr4 42111974 42112199 -160216148 - AluJo SINE Alu -17 295 85 481 309 72 7 chr4 42113103 42113255 -160215092 - MIR SINE MIR -4 258 97 223 307 9 97 chr4 42113641 42113755 -160214592 - L2 LINE L2 0 3272 3169 227 303 40 0 chr4 42113766 42113842 -160214505 + LTR33 LTR ERVL 273 351 -170 209 298 191 36 chr4 42114042 42114210 -160214137 - MIR SINE MIR -12 250 57 732 219 7 7 chr4 42114516 42114653 -160213694 - MLT1J LTR MaLR -328 183 47 1095 271 64 34 chr4 42115078 42115517 -160212830 - MLT1J LTR MaLR -7 504 53 540 189 53 15 chr4 42115528 42115660 -160212687 + MIR SINE MIR 82 218 -44 1552 96 55 0 chr4 42115793 42116011 -160212336 + MER30 DNA MER1_type 1 230 0 188 194 0 28 chr4 42116714 42116750 -160211597 - L2 LINE L2 -15 3298 3264 435 119 0 0 chr4 42117104 42117171 -160211176 + (TCCC)n Simple_repeat Simple_repeat 4 70 0 4290 126 20 88 chr4 42117540 42117640 -160210707 - LTR1 LTR ERV1 0 785 680 1970 131 10 3 chr4 42117640 42117945 -160210402 + AluSx SINE Alu 1 307 -5 4290 126 20 88 chr4 42117945 42118222 -160210125 - LTR1 LTR ERV1 -105 680 386 2060 130 3 0 chr4 42118222 42118521 -160209826 - AluSx SINE Alu -12 300 1 4290 126 20 88 chr4 42118521 42118984 -160209363 - LTR1 LTR ERV1 -399 386 1 1509 124 120 8 chr4 42119257 42119524 -160208823 - AluJb SINE Alu -15 297 1 1892 148 0 3 chr4 42119762 42120065 -160208282 + AluJb SINE Alu 1 302 -10 223 322 109 25 chr4 42120438 42120640 -160207707 - L2 LINE L2 -90 3223 3005 24 0 0 0 chr4 42120898 42120922 -160207425 + AT_rich Low_complexity Low_complexity 1 24 0 584 202 18 0 chr4 42121047 42121161 -160207186 - L2 LINE L2 -10 3303 3188 1564 123 72 93 chr4 42121161 42121493 -160206854 - MLT1B LTR MaLR 0 390 66 945 133 0 0 chr4 42121494 42121629 -160206718 + AluJo SINE Alu 1 135 -177 1532 206 27 0 chr4 42121629 42121921 -160206426 + AluJb SINE Alu 1 300 -12 417 183 24 24 chr4 42121927 42122009 -160206338 - MLT1B LTR MaLR -308 82 1 493 250 40 8 chr4 42122058 42122182 -160206165 - MIR SINE MIR -23 239 112 2074 118 0 13 chr4 42122412 42122717 -160205630 - AluSx SINE Alu 0 312 12 41 66 0 0 chr4 42122778 42122854 -160205493 + AT_rich Low_complexity Low_complexity 1 76 0 1060 158 0 0 chr4 42123459 42123636 -160204711 - FRAM SINE Alu 0 176 1 355 295 95 24 chr4 42123644 42123821 -160204526 - MIR SINE MIR -62 146 7 426 330 84 28 chr4 42123928 42124213 -160204134 - L2 LINE L2 -5 3308 3008 441 0 0 0 chr4 42124393 42124442 -160203905 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 191 267 0 0 chr4 42124447 42124492 -160203855 - L2 LINE L2 -8 3305 3261 212 208 0 38 chr4 42124503 42124556 -160203791 + T-rich Low_complexity Low_complexity 3 53 0 1914 88 4 0 chr4 42125020 42125269 -160203078 + AluSp SINE Alu 1 250 -63 2253 269 82 48 chr4 42125663 42126193 -160202154 + L1MEc LINE L1 122 632 -5764 823 215 115 5 chr4 42126193 42126395 -160201952 - MER58A DNA MER1_type 0 224 1 1447 148 170 0 chr4 42126403 42126680 -160201667 - MER33 DNA MER1_type 0 324 1 2253 269 82 48 chr4 42126680 42127000 -160201347 + L1MEc LINE L1 638 945 -5451 1458 203 37 11 chr4 42127000 42127271 -160201076 + AluJb SINE Alu 5 282 -30 958 211 0 16 chr4 42127271 42127305 -160201042 + AluJo SINE Alu 5 306 0 2253 269 82 48 chr4 42127305 42127691 -160200656 + L1MEc LINE L1 945 1316 -5080 635 211 8 16 chr4 42127691 42127819 -160200528 + FLAM_A SINE Alu 5 131 -2 2253 269 82 48 chr4 42127819 42128376 -160199971 + L1MEc LINE L1 1316 1971 -4425 1669 182 133 6 chr4 42128378 42128724 -160199623 - MER47B DNA MER2_type -1 417 28 5563 236 72 15 chr4 42128728 42130602 -160197745 + L1MEc LINE L1 1973 3890 -2325 577 333 61 4 chr4 42130720 42130951 -160197396 - MIR SINE MIR -9 253 10 238 259 122 38 chr4 42131279 42131410 -160196937 + MIR SINE MIR 47 188 -74 261 244 0 49 chr4 42131581 42131663 -160196684 + MER112 DNA MER1_type 8 85 -175 253 250 107 9 chr4 42131795 42131907 -160196440 + MER112 DNA MER1_type 113 235 -25 207 288 136 64 chr4 42132098 42132223 -160196124 - L2 LINE L2 0 3272 3139 2377 74 24 0 chr4 42132587 42132884 -160195463 - AluSq SINE Alu -9 304 1 388 284 30 56 chr4 42132952 42133149 -160195198 + L2 LINE L2 3103 3294 -19 318 80 0 0 chr4 42134374 42134424 -160193923 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1000 303 98 34 chr4 42134578 42135140 -160193207 + L1MC4a LINE L1 5333 5930 -1878 2389 79 3 0 chr4 42135175 42135478 -160192869 - AluY SINE Alu -7 304 1 1915 103 31 0 chr4 42135969 42136230 -160192117 - AluSx SINE Alu -43 269 1 2483 73 0 0 chr4 42136657 42136957 -160191390 + AluY SINE Alu 1 300 -11 503 266 70 25 chr4 42137872 42138071 -160190276 + L1ME LINE L1 5611 5818 -303 737 193 0 47 chr4 42138079 42138229 -160190118 + Tigger2a DNA MER2_type 1 143 -291 461 134 12 24 chr4 42138230 42138312 -160190035 - AluSg SINE Alu -12 297 217 1477 103 0 0 chr4 42138312 42138497 -160189850 - AluSg SINE Alu -125 185 1 1819 159 0 23 chr4 42138498 42138806 -160189541 + Tigger2a DNA MER2_type 144 444 0 2367 112 0 0 chr4 42139250 42139554 -160188793 - AluSx SINE Alu -8 304 1 4303 126 104 99 chr4 42139886 42141259 -160187088 - pTR5 LTR ERV1 0 2438 743 2199 130 0 0 chr4 42141292 42141593 -160186754 + AluSx SINE Alu 1 301 -11 232 353 110 15 chr4 42141596 42141732 -160186615 + L2 LINE L2 3121 3269 -3 216 0 0 0 chr4 42142599 42142623 -160185724 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 240 35 0 0 chr4 42142622 42142651 -160185696 + (TA)n Simple_repeat Simple_repeat 1 29 0 2216 107 7 3 chr4 42142655 42142954 -160185393 - AluSx SINE Alu -12 300 1 378 192 46 83 chr4 42143469 42143689 -160184658 + MIR SINE MIR 16 222 -40 820 61 0 0 chr4 42143701 42143799 -160184548 - AluSg/x SINE Alu -11 298 201 21 36 0 0 chr4 42143979 42144007 -160184340 + GC_rich Low_complexity Low_complexity 1 28 0 21 100 0 0 chr4 42144069 42144139 -160184208 + GC_rich Low_complexity Low_complexity 1 70 0 23 0 0 0 chr4 42144153 42144176 -160184171 + GC_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 42144347 42144375 -160183972 + GC_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr4 42145002 42145040 -160183307 + GC_rich Low_complexity Low_complexity 1 38 0 1801 125 4 0 chr4 42145313 42145569 -160182778 + AluSx SINE Alu 54 310 -2 2306 103 7 0 chr4 42145701 42146002 -160182345 - AluSp SINE Alu -10 303 1 337 290 39 7 chr4 42146268 42146425 -160181922 + L1ME2 LINE L1 5721 5886 -278 559 202 53 0 chr4 42148792 42148906 -160179441 + MIR SINE MIR 51 170 -92 2125 97 0 7 chr4 42148906 42149245 -160179102 + AluSg SINE Alu 4 340 0 1558 168 7 50 chr4 42150663 42150960 -160177387 - AluJb SINE Alu -28 284 1 590 244 118 39 chr4 42151510 42151739 -160176608 - MIR SINE MIR 0 262 16 1841 5 5 0 chr4 42152211 42152409 -160175938 - AluYa5 SINE Alu -2 309 111 539 282 51 0 chr4 42152418 42152574 -160175773 - MIR SINE MIR -70 192 29 2205 123 0 3 chr4 42152574 42152875 -160175472 - AluSx SINE Alu -12 300 1 385 294 14 14 chr4 42153581 42153727 -160174620 + MIR3 SINE MIR 17 162 -46 4005 168 16 48 chr4 42153796 42154607 -160173740 + LTR1 LTR ERV1 1 785 0 2746 265 127 25 chr4 42155778 42157149 -160171198 - L2 LINE L2 0 3313 1724 1330 266 53 36 chr4 42157151 42157552 -160170795 - HERV16 LTR ERVL -2318 3336 2924 2085 103 0 43 chr4 42157552 42157876 -160170471 - AluSg SINE Alu 0 310 1 1330 266 53 36 chr4 42157876 42157948 -160170399 - HERV16 LTR ERVL -2730 2924 2855 330 306 46 56 chr4 42158294 42158560 -160169787 - HERV16 LTR ERVL -3798 1198 1056 1924 146 3 3 chr4 42158863 42159157 -160169190 + AluJb SINE Alu 1 294 -18 261 323 57 16 chr4 42159476 42159600 -160168747 - L2 LINE L2 0 3272 3144 271 305 29 9 chr4 42160132 42160237 -160168110 - MIR SINE MIR -137 125 19 1795 155 41 33 chr4 42160260 42160622 -160167725 + MLT1A1 LTR MaLR 1 365 0 930 204 70 12 chr4 42160911 42161167 -160167180 - L1ME LINE L1 -553 5678 5410 1245 213 72 35 chr4 42161183 42161616 -160166731 - L1ME LINE L1 -3130 3085 2637 289 306 45 8 chr4 42161638 42161772 -160166575 - L1ME LINE L1 -3669 2546 2408 481 243 57 29 chr4 42161808 42162018 -160166329 - L1ME LINE L1 -4047 2349 2134 563 281 29 25 chr4 42162347 42162628 -160165719 - L1ME LINE L1 -4700 1696 1415 559 163 143 41 chr4 42162779 42162975 -160165372 + MER5C DNA MER1_type 55 270 -54 239 275 101 0 chr4 42163449 42163518 -160164829 - L1ME LINE L1 -5491 714 639 2204 122 13 3 chr4 42163753 42164057 -160164290 + AluSx SINE Alu 6 312 0 438 275 99 30 chr4 42164293 42164526 -160163821 + Charlie7 DNA MER1_type 346 594 -2018 * 1642 227 130 53 chr4 42164523 42164961 -160163386 + Charlie7 DNA MER1_type 1744 2147 -465 2291 96 13 0 chr4 42164961 42165263 -160163084 + AluSc SINE Alu 1 306 -3 1642 227 130 53 chr4 42165263 42165630 -160162717 + Charlie7 DNA MER1_type 2147 2611 -1 382 225 84 58 chr4 42165691 42165831 -160162516 + L2 LINE L2 3076 3224 -89 2429 72 0 10 chr4 42165831 42166137 -160162210 - AluY SINE Alu -8 303 1 382 225 84 58 chr4 42166137 42166187 -160162160 + L2 LINE L2 3224 3271 -42 1565 229 131 25 chr4 42166261 42166751 -160161596 + MLT1F LTR MaLR 1 542 0 970 206 16 16 chr4 42167257 42167446 -160160901 - MER5A DNA MER1_type 0 189 1 2361 96 3 6 chr4 42167508 42167821 -160160526 + AluSx SINE Alu 1 312 0 267 315 219 14 chr4 42167857 42168290 -160160057 + L2 LINE L2 2767 3302 -11 327 175 105 88 chr4 42169539 42169653 -160158694 - L2 LINE L2 -5 3308 3193 1190 247 97 43 chr4 42169707 42170172 -160158175 + MLT1H1 LTR MaLR 66 555 0 696 235 71 20 chr4 42170502 42170698 -160157649 - MIR SINE MIR -12 250 45 188 410 10 0 chr4 42170698 42170798 -160157549 - L2 LINE L2 -499 2815 2715 291 286 24 32 chr4 42171529 42171655 -160156692 + MIR3 SINE MIR 30 154 -54 1531 208 77 51 chr4 42171829 42172257 -160156090 - MLT1F LTR MaLR 0 542 104 582 226 17 0 chr4 42172422 42172537 -160155810 - MLT1F LTR MaLR -425 117 1 392 269 56 0 chr4 42172620 42172728 -160155619 + L2 LINE L2 3178 3291 -22 375 263 79 0 chr4 42172734 42172848 -160155499 - MIR SINE MIR -95 167 45 314 107 18 0 chr4 42173067 42173123 -160155224 + (GA)n Simple_repeat Simple_repeat 2 58 0 904 241 5 5 chr4 42174144 42174360 -160153987 + MIR SINE MIR 5 220 -42 873 296 84 74 chr4 42174415 42174490 -160153857 - L2 LINE L2 -50 3263 3190 1878 169 42 89 chr4 42174490 42174821 -160153526 + MLT1D LTR MaLR 2 300 -205 2060 154 0 7 chr4 42174821 42175127 -160153220 + AluSx SINE Alu 1 304 -8 1878 169 42 89 chr4 42175127 42175323 -160153024 + MLT1D LTR MaLR 300 504 -1 873 296 84 74 chr4 42175323 42176072 -160152275 - L2 LINE L2 -123 3190 2422 2163 129 0 0 chr4 42176072 42176367 -160151980 - AluSc SINE Alu -14 295 1 873 296 84 74 chr4 42176367 42176434 -160151913 - L2 LINE L2 -891 2422 2357 1474 174 4 0 chr4 42176587 42176822 -160151525 - AluSx SINE Alu -76 236 1 1640 156 54 10 chr4 42178807 42179102 -160149245 + AluSx SINE Alu 5 312 0 266 303 77 64 chr4 42179300 42179683 -160148664 + L2 LINE L2 2676 3078 -194 245 119 0 0 chr4 42179694 42179736 -160148611 + MSTB1 LTR MaLR 65 106 -326 319 228 238 0 chr4 42179800 42179901 -160148446 + L2 LINE L2 3189 3313 0 263 160 20 20 chr4 42180106 42180156 -160148191 + L2 LINE L2 3204 3253 -19 754 266 178 0 chr4 42180202 42180506 -160147841 + MLT1L LTR MaLR 43 400 -215 630 279 40 53 chr4 42180539 42180631 -160147716 + L2 LINE L2 2996 3088 -225 2017 162 105 37 chr4 42180631 42180831 -160147516 + MSTB1 LTR MaLR 1 186 -246 2140 117 0 20 chr4 42180831 42181130 -160147217 + AluSq SINE Alu 1 293 -20 2017 162 105 37 chr4 42181130 42181330 -160147017 + MSTB1 LTR MaLR 186 428 -4 630 279 40 53 chr4 42181330 42181559 -160146788 + L2 LINE L2 3088 3313 0 397 338 20 26 chr4 42182259 42182561 -160145786 - L2 LINE L2 -2353 961 662 2349 106 0 0 chr4 42182727 42183028 -160145319 + AluSx SINE Alu 1 301 -11 2056 120 11 11 chr4 42183629 42183960 -160144387 - AluSx SINE Alu 0 331 1 206 188 0 21 chr4 42184315 42184363 -160143984 - L2 LINE L2 -552 2762 2716 359 248 70 0 chr4 42184901 42185030 -160143317 + L1ME4a LINE L1 5982 6119 -2 2265 95 20 0 chr4 42185055 42185350 -160142997 + AluSx SINE Alu 2 302 -10 1026 104 8 0 chr4 42185731 42185865 -160142482 + AluSq/x SINE Alu 1 135 -178 1788 114 89 11 chr4 42185865 42186146 -160142201 + AluSx SINE Alu 1 303 -9 2149 123 13 0 chr4 42186320 42186622 -160141725 - AluSg SINE Alu -2 308 3 59 27 0 0 chr4 42186814 42186887 -160141460 + AT_rich Low_complexity Low_complexity 1 73 0 518 131 10 71 chr4 42186937 42187036 -160141311 - LTR1 LTR ERV1 0 785 693 2122 125 10 0 chr4 42187037 42187342 -160141005 + AluSx SINE Alu 1 308 -4 312 260 153 68 chr4 42187556 42187791 -160140556 + Charlie8 DNA MER1_type 3 257 -2160 182 289 0 0 chr4 42187881 42187919 -160140428 - MIR SINE MIR -21 241 204 638 168 7 0 chr4 42187925 42188062 -160140285 + (TCTA)n Simple_repeat Simple_repeat 2 139 0 1641 184 14 3 chr4 42188075 42188368 -160139979 + AluJo SINE Alu 1 296 -16 2018 141 0 7 chr4 42188370 42188676 -160139671 + AluSx SINE Alu 1 304 0 298 210 25 25 chr4 42188698 42188779 -160139568 - MIR SINE MIR -177 85 5 2175 113 0 10 chr4 42188921 42189222 -160139125 - AluSx SINE Alu -14 298 1 350 260 8 0 chr4 42189879 42190006 -160138341 + (TA)n Simple_repeat Simple_repeat 2 129 0 1507 116 27 4 chr4 42190929 42191154 -160137193 + MER30 DNA MER1_type 1 230 0 313 293 0 0 chr4 42191394 42191469 -160136878 + MIR3 SINE MIR 118 192 -16 258 285 33 98 chr4 42191599 42191683 -160136664 + MIR SINE MIR 51 139 -123 2054 130 0 3 chr4 42191683 42191983 -160136364 - AluSx SINE Alu -13 299 1 258 285 33 98 chr4 42191983 42192112 -160136235 + MIR SINE MIR 139 250 -12 2360 98 3 0 chr4 42192323 42192620 -160135727 + AluSx SINE Alu 3 300 -12 1586 142 37 15 chr4 42192787 42193055 -160135292 + AluJo SINE Alu 1 274 -38 237 173 77 0 chr4 42193108 42193160 -160135187 - MSTB1 LTR MaLR 0 457 402 315 65 0 0 chr4 42193171 42193217 -160135130 + (GA)n Simple_repeat Simple_repeat 2 47 0 2010 159 35 16 chr4 42193217 42193587 -160134760 - MSTB1 LTR MaLR -55 377 1 2351 94 3 10 chr4 42194307 42194614 -160133733 + AluSc SINE Alu 1 305 -4 25 0 0 0 chr4 42195113 42195138 -160133209 + AT_rich Low_complexity Low_complexity 1 25 0 277 273 0 0 chr4 42195517 42195583 -160132764 + MER5B DNA MER1_type 17 82 -96 201 238 16 32 chr4 42195797 42195860 -160132487 - MER5A DNA MER1_type 0 189 128 1981 161 6 3 chr4 42195977 42196288 -160132059 - AluJb SINE Alu 0 312 1 22 35 0 0 chr4 42196474 42196503 -160131844 + AT_rich Low_complexity Low_complexity 1 29 0 1809 147 22 26 chr4 42197595 42197908 -160130439 + AluJo SINE Alu 1 312 0 23 33 0 0 chr4 42198854 42198884 -160129463 + AT_rich Low_complexity Low_complexity 1 30 0 4993 119 39 11 chr4 42299886 42300651 -160027696 + MER11C LTR ERVK 271 1057 -14 192 77 0 0 chr4 42300823 42300849 -160027498 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 691 133 0 0 chr4 42300863 42300968 -160027379 - L1 LINE L1 -1314 4832 4728 2719 183 118 15 chr4 42301068 42301669 -160026678 + MER63C DNA MER1_type 268 930 0 294 304 80 0 chr4 42302688 42302826 -160025521 + MIR3 SINE MIR 47 195 -13 455 332 70 29 chr4 42303191 42303435 -160024912 + MIR SINE MIR 8 261 -1 323 303 90 0 chr4 42303870 42303992 -160024355 + L2 LINE L2 3180 3312 -1 402 176 0 0 chr4 42303995 42304063 -160024284 + AluS SINE Alu 2 69 -244 468 135 156 31 chr4 42304702 42304798 -160023549 + Ricksha DNA DNA 8 115 -1066 * 5874 131 20 44 chr4 42304781 42305128 -160023219 + Ricksha DNA DNA 1707 2061 -1185 2303 95 0 7 chr4 42305128 42305424 -160022923 + AluSg SINE Alu 6 299 -11 5874 131 20 44 chr4 42305424 42306080 -160022267 + Ricksha DNA DNA 2061 2686 -560 1295 173 4 13 chr4 42306081 42306312 -160022035 + AluJo SINE Alu 2 230 -82 2764 147 113 10 chr4 42306349 42306872 -160021475 + Ricksha DNA DNA 2678 3254 0 720 142 9 9 chr4 42307493 42307606 -160020741 - MLT1A1 LTR MaLR -252 113 1 375 292 112 52 chr4 42309148 42309543 -160018804 + L1M4 LINE L1 2429 2852 -3294 1910 128 0 18 chr4 42309543 42309817 -160018530 + AluSx SINE Alu 1 269 -43 375 292 112 52 chr4 42309817 42309842 -160018505 + L1M4 LINE L1 2852 2874 -3272 2206 191 34 46 chr4 42310071 42310573 -160017774 + MLT1D LTR MaLR 8 503 -2 2227 127 10 0 chr4 42310581 42310889 -160017458 + AluSx SINE Alu 1 311 -1 355 343 62 16 chr4 42311093 42311335 -160017012 + L1MEd LINE L1 849 1101 -5018 21 57 0 0 chr4 42311631 42311666 -160016681 + AT_rich Low_complexity Low_complexity 1 35 0 36992 60 14 1 chr4 42312070 42316722 -160011625 + L1P LINE L1 1 4711 -1435 22 35 0 0 chr4 42316886 42316915 -160011432 + GC_rich Low_complexity Low_complexity 1 29 0 30 109 0 0 chr4 42317010 42317138 -160011209 + GC_rich Low_complexity Low_complexity 1 128 0 491 328 65 4 chr4 42317425 42317672 -160010675 + L1ME LINE L1 5561 5822 -299 58 24 0 12 chr4 42318256 42318285 -160010062 + AT_rich Low_complexity Low_complexity 1 29 -53 2258 82 7 14 chr4 42318285 42318576 -160009771 - AluSx SINE Alu -23 289 1 58 24 0 12 chr4 42318576 42318629 -160009718 + AT_rich Low_complexity Low_complexity 29 82 0 1950 125 55 3 chr4 42318640 42318929 -160009418 - AluSx SINE Alu -8 304 1 1702 191 10 3 chr4 42319757 42320056 -160008291 - AluJo SINE Alu -11 301 1 245 301 98 22 chr4 42320170 42320353 -160007994 - L1ME LINE L1 -299 5871 5675 2658 262 137 78 chr4 42320426 42321891 -160006456 - L2 LINE L2 -3 3310 1932 2422 99 0 0 chr4 42321891 42322195 -160006152 + AluY SINE Alu 1 304 -7 1926 155 0 7 chr4 42322205 42322502 -160005845 + AluSx SINE Alu 1 295 -17 2658 262 137 78 chr4 42322502 42323766 -160004581 - L2 LINE L2 -1389 1924 394 629 252 26 41 chr4 42323876 42324247 -160004100 - L1ME LINE L1 -615 5549 5188 2319 99 0 0 chr4 42324303 42324596 -160003751 - AluSx SINE Alu -19 293 1 183 42 0 0 chr4 42324686 42324710 -160003637 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 236 227 0 0 chr4 42324981 42325025 -160003322 + MLT1J1 LTR MaLR 109 152 -294 247 259 74 25 chr4 42325026 42325107 -160003240 + MLT1J1 LTR MaLR 126 210 -236 476 346 91 5 chr4 42325254 42325462 -160002885 + MER115 DNA AcHobo 201 426 -267 600 185 9 0 chr4 42325492 42325600 -160002747 + MER115 DNA AcHobo 489 597 -96 2114 128 0 3 chr4 42325623 42325920 -160002427 - AluSx SINE Alu -16 296 1 1137 123 6 12 chr4 42325951 42326113 -160002234 - AluSx SINE Alu -151 161 1 983 147 21 32 chr4 42326150 42326340 -160002007 - MER53 DNA DNA 0 189 2 380 271 41 25 chr4 42326397 42326519 -160001828 + MLT1J2 LTR MaLR 268 391 -59 2287 93 3 26 chr4 42326542 42326855 -160001492 - AluSp SINE Alu -7 306 1 500 196 131 26 chr4 42327243 42327396 -160000951 - MIR SINE MIR -15 247 79 2179 101 17 0 chr4 42327441 42327601 -160000746 - AluSx SINE Alu -19 293 124 351 0 0 0 chr4 42327601 42327640 -160000707 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2179 101 17 0 chr4 42327640 42327767 -160000580 - AluSx SINE Alu -188 124 1 1356 229 70 11 chr4 42327773 42327972 -160000375 + LTR37A LTR ERV1 34 220 -206 2896 51 19 3 chr4 42327972 42328342 -160000005 - L1PA7 LINE L1 -3 6151 5776 1356 229 70 11 chr4 42328342 42328513 -159999834 + LTR37A LTR ERV1 220 426 0 450 0 0 0 chr4 42328995 42329045 -159999302 + (CA)n Simple_repeat Simple_repeat 2 51 0 1586 132 0 0 chr4 42329596 42329815 -159998532 - AluSq SINE Alu -94 219 1 320 249 294 11 chr4 42329921 42330098 -159998249 - MIR SINE MIR -30 232 6 313 371 7 53 chr4 42331929 42332080 -159996267 + L2 LINE L2 3128 3271 -1 628 270 86 35 chr4 42332811 42333024 -159995323 - L1ME4a LINE L1 -3 6118 5917 2540 26 7 17 chr4 42333024 42333326 -159995021 - AluY SINE Alu -12 299 1 628 270 86 35 chr4 42333326 42333722 -159994625 - L1ME4a LINE L1 -204 5917 5445 202 179 26 0 chr4 42333743 42333782 -159994565 + L2 LINE L2 1695 1734 -1580 259 253 38 13 chr4 42333974 42334053 -159994294 - L1MC4 LINE L1 -339 7703 7623 722 212 75 14 chr4 42334486 42334632 -159993715 + FRAM SINE Alu 1 155 -11 246 304 37 25 chr4 42334692 42334853 -159993494 - L1ME4a LINE L1 -1869 4277 4115 41610 53 11 1 chr4 42334861 42340827 -159987520 - L1PA5 LINE L1 0 6154 131 441 324 0 0 chr4 42343727 42343897 -159984450 + G-rich Low_complexity Low_complexity 1 170 0 526 188 8 8 chr4 42343897 42344014 -159984333 - AluSg1 SINE Alu -191 118 2 2444 96 10 23 chr4 42344016 42344054 -159984293 - L1PB1 LINE L1 -178 5973 5936 1783 220 12 99 chr4 42344054 42344649 -159983698 - L1PA11 LINE L1 -239 5935 5393 2322 91 0 7 chr4 42344652 42344949 -159983398 - AluSg SINE Alu -15 295 1 394 301 130 2 chr4 42346114 42346469 -159981878 - L1ME4a LINE L1 -2799 3347 3073 2566 115 8 11 chr4 42346501 42346866 -159981481 - THE1B LTR MaLR 0 364 1 393 200 9 36 chr4 42346868 42346978 -159981369 + LTR67 LTR ERVL 428 534 -23 623 225 47 35 chr4 42347004 42347173 -159981174 - MIR3 SINE MIR -3 205 35 1040 233 12 33 chr4 42347713 42347958 -159980389 - MIR SINE MIR -21 241 2 523 207 0 0 chr4 42348003 42348085 -159980262 - AluS SINE Alu -231 82 1 21 0 0 0 chr4 42348429 42348450 -159979897 + AT_rich Low_complexity Low_complexity 1 21 0 470 237 26 0 chr4 42348776 42348890 -159979457 + AluSq/x SINE Alu 1 117 -195 226 213 148 57 chr4 42349582 42349704 -159978643 - L1ME3A LINE L1 0 6170 6038 519 247 114 20 chr4 42349717 42349972 -159978375 - L1ME3A LINE L1 -194 5972 5694 * 2829 199 68 6 chr4 42349969 42350431 -159977916 + L1ME1 LINE L1 5514 6184 -150 2162 148 36 14 chr4 42350431 42350795 -159977552 + THE1C LTR MaLR 4 375 0 2829 199 68 6 chr4 42350795 42350957 -159977390 + L1ME1 LINE L1 6184 6334 0 553 260 156 22 chr4 42350952 42351109 -159977238 - L1ME3A LINE L1 -456 5714 5579 * 2051 122 7 3 chr4 42351109 42351397 -159976950 - AluSx SINE Alu -15 297 9 553 260 156 22 chr4 42351397 42351508 -159976839 - L1ME3A LINE L1 -591 5579 5410 463 243 127 51 chr4 42351532 42351824 -159976523 - L1ME3A LINE L1 -823 5323 5010 651 216 0 16 chr4 42351846 42351971 -159976376 + AluJ SINE Alu 3 125 -187 270 0 0 0 chr4 42351976 42352006 -159976341 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1571 138 3 42 chr4 42357935 42358224 -159970123 + AluSx SINE Alu 4 281 -31 1554 78 0 0 chr4 42358239 42358431 -159969916 + L1PB1 LINE L1 5959 6150 -1 1103 302 68 20 chr4 42358630 42359102 -159969245 + L2 LINE L2 2534 3027 -286 294 95 0 0 chr4 42359227 42359269 -159969078 + (A)n Simple_repeat Simple_repeat 1 42 0 2068 118 3 10 chr4 42359657 42359953 -159968394 + AluSq SINE Alu 4 297 -16 21 71 0 0 chr4 42359957 42359999 -159968348 + AT_rich Low_complexity Low_complexity 1 42 0 932 208 0 6 chr4 42360255 42360438 -159967909 + AluJ SINE Alu 131 312 0 344 165 113 31 chr4 42360466 42360532 -159967815 + L1P LINE L1 3711 3789 -2357 354 45 0 0 chr4 42360532 42360576 -159967771 + (CA)n Simple_repeat Simple_repeat 2 45 0 344 165 113 31 chr4 42360576 42360606 -159967741 + L1P LINE L1 3789 3815 -2331 2120 201 55 79 chr4 42361082 42361445 -159966902 - MLT1E1 LTR MaLR -2 652 311 2143 98 3 20 chr4 42361445 42361741 -159966606 - AluSc SINE Alu -18 291 1 2120 201 55 79 chr4 42361741 42362032 -159966315 - MLT1E1 LTR MaLR -343 311 14 1871 132 29 0 chr4 42362069 42362349 -159965998 + AluSg SINE Alu 1 288 -22 586 184 54 134 chr4 42362583 42362699 -159965648 + L1ME2 LINE L1 5771 5895 -269 1203 197 30 57 chr4 42362699 42362999 -159965348 + AluSx SINE Alu 2 293 -9 586 184 54 134 chr4 42362999 42363159 -159965188 + L1ME2 LINE L1 5895 6025 -139 2037 113 3 7 chr4 42363159 42363470 -159964877 - AluSg SINE Alu 0 310 1 1296 148 10 5 chr4 42363470 42363672 -159964675 - L1PA16 LINE L1 -11 6155 5953 208 267 0 0 chr4 42363787 42363832 -159964515 + MIR3 SINE MIR 148 192 -16 2597 134 10 10 chr4 42364002 42364405 -159963942 - MER9 LTR ERVK 0 511 109 184 430 18 0 chr4 42364580 42364694 -159963653 + MIR SINE MIR 37 152 -110 2219 91 10 0 chr4 42364842 42365140 -159963207 + AluY SINE Alu 1 301 -10 277 314 9 9 chr4 42365613 42365718 -159962629 + CT-rich Low_complexity Low_complexity 1 105 0 3146 123 119 4 chr4 42366779 42367275 -159961072 - MER41C LTR ERV1 -1 553 1 1053 150 52 16 chr4 42367318 42367511 -159960836 + L1MC1 LINE L1 453 652 -5774 1140 59 13 0 chr4 42367512 42367665 -159960682 + AluY SINE Alu 147 301 -10 2158 91 10 19 chr4 42367673 42367982 -159960365 + AluSx SINE Alu 1 306 -6 1207 108 0 0 chr4 42367982 42368140 -159960207 + AluSc SINE Alu 132 289 -20 2242 178 45 25 chr4 42368141 42368293 -159960054 + L1MC1 LINE L1 647 794 -5632 2635 140 35 37 chr4 42368293 42368722 -159959625 - MSTC LTR MaLR 0 428 1 2242 178 45 25 chr4 42368722 42369337 -159959010 + L1MC1 LINE L1 794 1663 -4763 1649 158 0 52 chr4 42369767 42370077 -159958270 + AluJo SINE Alu 1 294 -18 2665 118 101 49 chr4 42370577 42371170 -159957177 + L1MC1 LINE L1 1738 2361 -4065 1889 171 36 86 chr4 42371177 42371440 -159956907 + L1MC1 LINE L1 3049 3273 -3153 831 211 0 35 chr4 42371440 42371611 -159956736 - FRAM SINE Alu 0 166 2 1889 171 36 86 chr4 42371611 42371896 -159956451 + L1MC1 LINE L1 3273 3570 -2856 7223 187 39 49 chr4 42371916 42371968 -159956379 + L1MC1 LINE L1 3735 3786 -2827 2187 115 0 3 chr4 42371968 42372273 -159956074 + AluSq SINE Alu 1 304 -9 7223 187 39 49 chr4 42372273 42373595 -159954752 + L1MC1 LINE L1 3786 5119 -1494 2271 111 0 0 chr4 42373595 42373893 -159954454 - AluSx SINE Alu -14 298 1 7223 187 39 49 chr4 42373893 42375305 -159953042 + L1MC1 LINE L1 5119 6485 -128 4038 172 84 12 chr4 42375310 42376726 -159951621 + L1MB7 LINE L1 4654 6173 -11 2341 59 0 7 chr4 42376974 42377290 -159951057 + AluSc SINE Alu 5 318 0 2013 121 3 3 chr4 42378109 42378391 -159949956 + AluSg SINE Alu 1 282 -28 324 0 0 0 chr4 42378391 42378427 -159949920 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 876 274 102 64 chr4 42378427 42378946 -159949401 - MLT1G1 LTR MaLR -13 582 1 1601 103 0 0 chr4 42379592 42379795 -159948552 + AluSg/x SINE Alu 95 297 -15 4457 124 22 6 chr4 42379835 42380505 -159947842 - HSMAR2 DNA Mariner 0 1302 622 1937 153 0 20 chr4 42380516 42380811 -159947536 - AluSg SINE Alu -13 297 9 2306 157 16 0 chr4 42380824 42381194 -159947153 - HSMAR2 DNA Mariner -896 406 31 1591 191 3 10 chr4 42381194 42381492 -159946855 - AluJo SINE Alu -16 296 1 238 189 0 0 chr4 42381540 42381577 -159946770 - Alu SINE Alu -265 37 1 242 308 200 25 chr4 42381698 42381938 -159946409 - L2 LINE L2 -845 2469 2188 229 209 128 35 chr4 42382481 42382567 -159945780 + L2 LINE L2 3216 3309 -4 229 214 60 95 chr4 42383082 42383166 -159945181 - L1MC/D LINE L1 -1886 5922 5842 792 293 44 40 chr4 42383212 42383611 -159944736 - L1MC/D LINE L1 -456 5708 5312 2544 93 30 38 chr4 42383954 42384321 -159944026 - THE1B LTR MaLR 0 364 1 278 206 21 72 chr4 42384349 42384446 -159943901 + HERVE LTR ERV1 4170 4261 -3552 22 0 0 0 chr4 42384691 42384713 -159943634 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr4 42384762 42384804 -159943543 + AT_rich Low_complexity Low_complexity 1 42 0 277 289 73 10 chr4 42385098 42385208 -159943139 + MIR SINE MIR 39 153 -63 354 178 14 27 chr4 42385502 42385575 -159942772 - MER5A DNA MER1_type -117 72 1 29 60 0 0 chr4 42385748 42385798 -159942549 + AT_rich Low_complexity Low_complexity 1 50 0 338 308 100 15 chr4 42385992 42386122 -159942225 + MIR SINE MIR 109 249 -13 338 244 24 41 chr4 42386357 42386480 -159941867 + L1MC5 LINE L1 7805 7925 -36 1240 165 4 48 chr4 42386486 42386716 -159941631 + AluJo SINE Alu 1 220 -92 305 125 0 0 chr4 42386716 42386764 -159941583 + AluJb SINE Alu 86 133 -169 186 43 0 0 chr4 42386780 42386803 -159941544 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 1131 147 0 6 chr4 42386807 42386977 -159941370 + AluSg/x SINE Alu 129 297 -15 195 237 0 0 chr4 42387007 42387045 -159941302 - L2 LINE L2 -6 3266 3229 286 300 93 47 chr4 42387146 42387296 -159941051 - L2 LINE L2 -212 3060 2904 714 106 106 0 chr4 42387461 42387574 -159940773 - L1MA10 LINE L1 -7 6327 6203 2321 109 0 0 chr4 42388217 42388511 -159939836 - AluSx SINE Alu -16 296 3 1551 190 30 73 chr4 42389233 42389479 -159938868 + L1MC4 LINE L1 7459 7714 -328 2493 82 0 0 chr4 42389479 42389782 -159938565 + AluSg SINE Alu 1 303 -7 1551 190 30 73 chr4 42389782 42389839 -159938508 + L1MC4 LINE L1 7714 7772 -270 1955 143 0 3 chr4 42389839 42390126 -159938221 + AluSx SINE Alu 1 286 -26 1551 190 30 73 chr4 42390126 42390248 -159938099 + L1MC4 LINE L1 7772 7867 -175 1650 213 55 91 chr4 42390571 42391140 -159937207 + MER90 LTR ERV1 1 548 -27 865 124 90 0 chr4 42391509 42391654 -159936693 - AluJ SINE Alu -18 294 137 3559 194 68 9 chr4 42391656 42392385 -159935962 - L1MB8 LINE L1 -296 5882 5036 2247 107 0 7 chr4 42392385 42392683 -159935664 + AluSq SINE Alu 1 296 -17 3559 194 68 9 chr4 42392683 42393151 -159935196 - L1MB8 LINE L1 -1142 5036 4597 710 190 183 0 chr4 42393762 42393899 -159934448 - AluJo SINE Alu -4 298 137 728 190 0 49 chr4 42393899 42394015 -159934332 - AluJo SINE Alu -176 136 27 1601 157 240 17 chr4 42394015 42394365 -159933982 - MSTA LTR MaLR 0 428 1 728 190 0 49 chr4 42394365 42394390 -159933957 - AluJo SINE Alu -285 27 2 22 35 0 0 chr4 42394514 42394543 -159933804 + AT_rich Low_complexity Low_complexity 1 29 0 2043 128 3 53 chr4 42394545 42394865 -159933482 + AluSx SINE Alu 1 304 -8 334 100 0 0 chr4 42394870 42394920 -159933427 - L1MB5 LINE L1 -8 6166 6117 232 297 9 18 chr4 42394929 42395040 -159933307 - L1MC4 LINE L1 -1 8041 7932 2320 75 3 10 chr4 42395056 42395351 -159932996 - AluSq SINE Alu -20 293 1 931 183 0 0 chr4 42395632 42395785 -159932562 - FRAM SINE Alu -23 153 1 392 213 145 45 chr4 42395801 42395969 -159932378 - L1MC3 LINE L1 -298 5866 5696 2031 115 20 10 chr4 42395969 42396274 -159932073 - AluSx SINE Alu -4 308 1 2315 95 7 0 chr4 42396291 42396595 -159931752 - AluSc SINE Alu -3 306 1 219 248 23 105 chr4 42396616 42396749 -159931598 + MIR SINE MIR 4 147 -61 2289 84 3 13 chr4 42397505 42397803 -159930544 - AluSx SINE Alu -17 295 1 232 224 118 0 chr4 42398207 42398292 -159930055 + MLT1J LTR MaLR 416 510 -1 217 222 74 0 chr4 42398297 42398351 -159929996 + L3b LINE CR1 1526 1583 0 2530 47 56 19 chr4 42398658 42398979 -159929368 - L1PA8 LINE L1 0 6172 5840 2107 128 6 16 chr4 42399652 42399965 -159928382 - AluJb SINE Alu -2 310 1 342 0 0 0 chr4 42400297 42400335 -159928012 + (TG)n Simple_repeat Simple_repeat 1 38 0 28 0 0 0 chr4 42400724 42400752 -159927595 + AT_rich Low_complexity Low_complexity 1 28 0 2310 105 10 0 chr4 42400868 42401174 -159927173 + AluSx SINE Alu 1 309 -3 183 317 110 0 chr4 42401408 42401490 -159926857 - L2 LINE L2 -3 3310 3220 344 249 127 55 chr4 42401592 42401757 -159926590 + MER5B DNA MER1_type 2 178 0 3331 162 53 12 chr4 42401852 42402458 -159925889 + L1MB5 LINE L1 5544 6174 0 2227 105 3 7 chr4 42402522 42402828 -159925519 + AluSg SINE Alu 1 305 -5 3027 103 32 75 chr4 42403202 42403333 -159925014 + L1PB3 LINE L1 5654 5789 -365 824 145 8 0 chr4 42403333 42403450 -159924897 + FLAM_C SINE Alu 1 118 -15 3027 103 32 75 chr4 42403450 42403681 -159924666 + L1PB3 LINE L1 5789 5990 -164 2208 123 0 7 chr4 42403681 42403989 -159924358 + AluSx SINE Alu 1 306 -6 3027 103 32 75 chr4 42403989 42404148 -159924199 + L1PB3 LINE L1 5990 6154 0 2373 64 0 0 chr4 42404308 42404618 -159923729 + AluY SINE Alu 1 310 0 2719 244 61 26 chr4 42405147 42405913 -159922434 - L1MD2 LINE L1 -17 6342 5550 1411 75 6 0 chr4 42405982 42406155 -159922192 - AluSq SINE Alu -15 298 125 767 113 0 140 chr4 42406600 42406750 -159921597 - FLAM_C SINE Alu 0 133 5 2630 44 0 16 chr4 42406781 42407096 -159921251 + AluY SINE Alu 1 310 -1 2494 195 58 54 chr4 42407899 42408143 -159920204 - L1MC4 LINE L1 -142 7900 7658 2028 135 0 7 chr4 42408143 42408446 -159919901 - AluJb SINE Alu -11 301 1 2494 195 58 54 chr4 42408446 42408682 -159919665 - L1MC4 LINE L1 -384 7658 7424 2365 137 52 3 chr4 42408682 42409048 -159919299 - L1MC1 LINE L1 -5 6328 5945 2494 195 58 54 chr4 42409048 42409086 -159919261 - L1MC4 LINE L1 -618 7424 7388 2465 85 0 0 chr4 42409086 42409391 -159918956 - AluSq SINE Alu -8 305 1 2494 195 58 54 chr4 42409391 42409623 -159918724 - L1MC4 LINE L1 -654 7388 6997 5648 62 16 62 chr4 42409623 42410414 -159917933 - L1PA13 LINE L1 -4 6159 5405 370 46 0 0 chr4 42411211 42411271 -159917076 - MLT2A2 LTR ERVL 0 453 395 2892 110 5 2 chr4 42411619 42412019 -159916328 - MLT2A2 LTR ERVL -51 402 2 450 336 8 16 chr4 42412030 42412155 -159916192 - L2 LINE L2 -8 3264 3141 317 270 101 2 chr4 42412254 42412374 -159915973 - MIR SINE MIR -57 151 19 203 257 68 40 chr4 42413011 42413085 -159915262 - L2 LINE L2 -4 3268 3193 434 284 0 98 chr4 42413311 42413526 -159914821 + L2 LINE L2 3116 3309 -4 180 0 0 0 chr4 42413757 42413777 -159914570 + (T)n Simple_repeat Simple_repeat 1 20 0 937 176 6 0 chr4 42415018 42415177 -159913170 + AluJb SINE Alu 138 297 -15 268 240 125 31 chr4 42415479 42415575 -159912772 - L2 LINE L2 -6 3307 3203 2087 121 3 0 chr4 42416759 42417073 -159911274 + AluSx SINE Alu 1 315 0 260 296 10 31 chr4 42417137 42417235 -159911112 - MER5A DNA MER1_type -6 183 88 1607 185 67 34 chr4 42417300 42417657 -159910690 - MLT1E LTR MaLR -2 591 223 1022 185 83 11 chr4 42418144 42418409 -159909938 - L1P4 LINE L1 -626 5537 5254 1611 217 55 81 chr4 42418412 42418592 -159909755 - L1MC4 LINE L1 -1033 7009 6826 1699 148 14 14 chr4 42418592 42418869 -159909478 - AluJb SINE Alu -1 311 35 1611 217 55 81 chr4 42418869 42419255 -159909092 - L1MC4 LINE L1 -1216 6826 6458 2137 104 10 0 chr4 42419781 42420070 -159908277 + AluSx SINE Alu 1 292 -20 23 33 0 0 chr4 42420095 42420125 -159908222 + AT_rich Low_complexity Low_complexity 1 30 0 261 0 0 0 chr4 42420200 42420229 -159908118 + (CA)n Simple_repeat Simple_repeat 1 29 0 2345 94 0 0 chr4 42420316 42420613 -159907734 - AluSq SINE Alu -16 297 1 586 223 74 7 chr4 42420617 42420765 -159907582 + LTR41 LTR ERVL 5 162 -611 851 204 104 16 chr4 42420802 42421124 -159907223 + LTR40b LTR ERVL 77 447 -15 323 218 42 11 chr4 42421151 42421246 -159907101 + LTR41 LTR ERVL 684 795 0 414 222 23 55 chr4 42421752 42421923 -159906424 + MIR SINE MIR 40 244 -18 786 238 40 0 chr4 42422334 42422485 -159905862 - MER58A DNA MER1_type 0 162 6 26 0 0 0 chr4 42422623 42422649 -159905698 + AT_rich Low_complexity Low_complexity 1 26 0 834 131 0 8 chr4 42422650 42422772 -159905575 - FLAM_C SINE Alu -10 133 13 36 53 0 0 chr4 42423125 42423182 -159905165 + AT_rich Low_complexity Low_complexity 1 57 0 1845 181 3 0 chr4 42423597 42423906 -159904441 - AluSx SINE Alu 0 312 3 236 281 65 98 chr4 42424092 42424323 -159904024 - L1MEd LINE L1 -5733 386 172 2066 133 13 3 chr4 42424323 42424624 -159903723 - AluJb SINE Alu -6 306 3 236 281 65 98 chr4 42424624 42424791 -159903556 - L1MEd LINE L1 -5947 172 1 1865 155 0 29 chr4 42425082 42425392 -159902955 + AluJb SINE Alu 1 301 -11 274 306 174 49 chr4 42425578 42425682 -159902665 + MER5B DNA MER1_type 17 145 -33 3876 112 4 4 chr4 42425682 42426193 -159902154 + MER9 LTR ERVK 1 511 0 274 306 174 49 chr4 42426193 42426232 -159902115 + MER5B DNA MER1_type 145 178 0 208 267 0 0 chr4 42426364 42426409 -159901938 - MIR3 SINE MIR -16 192 148 1296 148 10 5 chr4 42426524 42426726 -159901621 + L1PA16 LINE L1 5953 6155 -11 2154 84 0 84 chr4 42426726 42427047 -159901300 + AluSg SINE Alu 1 294 -16 1744 130 65 24 chr4 42427260 42427552 -159900795 - AluJo SINE Alu -7 305 2 21 36 0 0 chr4 42427704 42427732 -159900615 + AT_rich Low_complexity Low_complexity 1 28 0 1571 155 7 63 chr4 42428474 42428777 -159899570 + AluJo SINE Alu 6 291 -21 1548 141 72 4 chr4 42428903 42429165 -159899182 - AluJo SINE Alu -17 295 16 2184 118 0 19 chr4 42429200 42429523 -159898824 - MER84 LTR ERVI -190 317 1 189 282 0 0 chr4 42430104 42430143 -159898204 - L2 LINE L2 -9 3263 3225 7824 189 43 25 chr4 42430412 42433126 -159895221 - L1MB5 LINE L1 -46 6128 3366 2265 76 6 28 chr4 42433395 42433712 -159894635 - AluY SINE Alu -1 310 1 731 265 85 18 chr4 42433747 42433970 -159894377 + MIR SINE MIR 19 256 -6 1944 137 10 3 chr4 42436624 42436930 -159891417 - AluSx SINE Alu -4 308 1 2280 102 0 0 chr4 42437467 42437761 -159890586 - AluSq SINE Alu -19 294 1 682 243 85 11 chr4 42437898 42438087 -159890260 + MIR SINE MIR 47 249 -13 1887 130 53 3 chr4 42438158 42438442 -159889905 - AluSx SINE Alu -14 298 1 1365 147 8 66 chr4 42438936 42439100 -159889247 - AluJo SINE Alu -30 282 137 2181 118 0 3 chr4 42439100 42439405 -159888942 + AluSg SINE Alu 1 304 -6 1365 147 8 66 chr4 42439405 42439498 -159888849 - AluJo SINE Alu -175 137 40 2344 99 0 7 chr4 42439880 42440184 -159888163 - AluSg SINE Alu -8 302 1 1475 183 183 35 chr4 42441727 42442125 -159886222 + MSTB2 LTR MaLR 1 457 0 245 285 44 38 chr4 42442284 42442442 -159885905 + L2 LINE L2 2745 2903 -411 228 234 160 21 chr4 42442835 42442929 -159885418 + MSTB2 LTR MaLR 202 308 -149 296 284 0 0 chr4 42443292 42443359 -159884988 - HsTC2 DNA Tc2 -3 1895 1829 235 81 27 0 chr4 42443388 42443425 -159884922 - HsTC2 DNA Tc2 -177 1721 1684 386 244 185 0 chr4 42443432 42443551 -159884796 - HsTC2 DNA Tc2 -1757 141 1 429 256 169 17 chr4 42443609 42443781 -159884566 - MIR SINE MIR -6 256 59 649 225 54 0 chr4 42444811 42444940 -159883407 + MIR SINE MIR 4 139 -123 28 29 0 0 chr4 42445249 42445284 -159883063 + AT_rich Low_complexity Low_complexity 1 35 0 1886 149 0 30 chr4 42445467 42445768 -159882579 + AluJb SINE Alu 1 292 -20 1289 125 0 11 chr4 42446285 42446469 -159881878 + AluSq SINE Alu 38 219 -94 586 124 7 109 chr4 42446469 42446606 -159881741 + AluSg/x SINE Alu 186 308 -2 2216 103 0 10 chr4 42446635 42446936 -159881411 + AluSx SINE Alu 1 298 -14 282 238 69 39 chr4 42446969 42447050 -159881297 - MIR3 SINE MIR -52 156 73 31 68 0 0 chr4 42448159 42448218 -159880129 + AT_rich Low_complexity Low_complexity 1 59 0 180 77 0 0 chr4 42448819 42448845 -159879502 + (TGGG)n Simple_repeat Simple_repeat 4 29 0 2203 130 0 0 chr4 42448886 42449194 -159879153 + AluSx SINE Alu 1 308 -4 996 212 125 23 chr4 42449202 42449466 -159878881 + AluJo SINE Alu 1 291 -11 1023 242 147 58 chr4 42449711 42450226 -159878121 - L2 LINE L2 -1 3312 2733 261 0 0 0 chr4 42450461 42450490 -159877857 + (TG)n Simple_repeat Simple_repeat 2 30 0 451 217 17 11 chr4 42450490 42450665 -159877682 + (TA)n Simple_repeat Simple_repeat 2 177 0 1770 193 0 0 chr4 42450781 42451077 -159877270 + AluJb SINE Alu 1 296 -16 2289 92 3 0 chr4 42451165 42451457 -159876890 + AluSc SINE Alu 1 293 -16 500 323 54 79 chr4 42451582 42451951 -159876396 - L3 LINE CR1 -431 1146 787 1656 142 32 79 chr4 42452233 42452549 -159875798 - AluJb SINE Alu -11 301 1 21 0 0 0 chr4 42453041 42453062 -159875285 + AT_rich Low_complexity Low_complexity 1 21 0 270 220 0 0 chr4 42453066 42453125 -159875222 + L2 LINE L2 2799 2857 -457 901 296 104 50 chr4 42453163 42453825 -159874522 - L2 LINE L2 -1213 2101 1404 342 256 49 0 chr4 42454233 42454315 -159874032 + L1MC4 LINE L1 6618 6703 -1339 309 51 0 0 chr4 42454316 42454355 -159873992 + (TG)n Simple_repeat Simple_repeat 2 40 0 1980 149 10 3 chr4 42454372 42454667 -159873680 - AluSx SINE Alu -15 297 1 384 22 0 0 chr4 42455086 42455131 -159873216 + (TA)n Simple_repeat Simple_repeat 2 46 0 330 353 16 1 chr4 42455618 42455806 -159872541 + MIR SINE MIR 38 252 -10 482 306 75 57 chr4 42456537 42456802 -159871545 - L2 LINE L2 -232 3081 2812 973 146 0 19 chr4 42456961 42457119 -159871228 - AluSg/x SINE Alu -23 289 135 3316 208 82 6 chr4 42457676 42458497 -159869850 - L1MC4 LINE L1 -344 7698 6816 354 201 7 50 chr4 42458961 42459100 -159869247 + L1ME4a LINE L1 5984 6116 -5 208 158 0 53 chr4 42459358 42459415 -159868932 + A-rich Low_complexity Low_complexity 2 55 0 21 71 0 0 chr4 42459551 42459593 -159868754 + AT_rich Low_complexity Low_complexity 1 42 0 266 311 23 40 chr4 42459621 42459798 -159868549 - L1MC4 LINE L1 -1904 5904 5731 294 179 0 0 chr4 42459800 42459856 -159868491 + (TA)n Simple_repeat Simple_repeat 1 56 0 236 209 0 15 chr4 42459969 42460036 -159868311 + (TATG)n Simple_repeat Simple_repeat 4 69 0 898 299 160 39 chr4 42460103 42461474 -159866873 - L1MC4 LINE L1 -608 5554 4020 2128 112 7 7 chr4 42461530 42461824 -159866523 - AluSx SINE Alu -18 294 1 3121 208 64 13 chr4 42461933 42462697 -159865650 - L1MB7 LINE L1 -11 6173 5371 1805 126 7 48 chr4 42463462 42463771 -159864576 + AluJo SINE Alu 1 296 -16 617 162 0 0 chr4 42464047 42464146 -159864201 + AluJb SINE Alu 27 125 -187 2145 139 0 3 chr4 42464158 42464468 -159863879 + AluSx SINE Alu 1 309 -3 2531 131 0 1 chr4 42464468 42464838 -159863509 + L1PA16 LINE L1 5776 6146 -20 1134 60 0 0 chr4 42465192 42465326 -159863021 + AluSq/x SINE Alu 1 134 -179 2197 107 7 3 chr4 42465329 42465638 -159862709 + AluSx SINE Alu 3 312 0 1824 165 0 28 chr4 42465685 42466006 -159862341 + AluJb SINE Alu 1 312 0 365 211 51 64 chr4 42466042 42466245 -159862102 - AluSc SINE Alu 0 325 125 594 181 9 0 chr4 42466364 42466469 -159861878 - AluSq/x SINE Alu -207 106 1 3713 208 75 6 chr4 42466470 42467366 -159860981 - L1MC4 LINE L1 -269 7773 6816 354 201 7 50 chr4 42467830 42467969 -159860378 + L1ME4a LINE L1 5984 6116 -5 208 158 0 53 chr4 42468227 42468284 -159860063 + A-rich Low_complexity Low_complexity 2 55 0 21 71 0 0 chr4 42468421 42468463 -159859884 + AT_rich Low_complexity Low_complexity 1 42 0 294 305 23 40 chr4 42468491 42468668 -159859679 - L1MC4 LINE L1 -1904 5904 5731 273 196 0 0 chr4 42468670 42468726 -159859621 + (TA)n Simple_repeat Simple_repeat 1 56 0 236 209 0 15 chr4 42468839 42468906 -159859441 + (TATG)n Simple_repeat Simple_repeat 4 69 0 898 299 160 39 chr4 42468973 42470344 -159858003 - L1MC4 LINE L1 -608 5554 4020 2128 112 7 7 chr4 42470400 42470694 -159857653 - AluSx SINE Alu -18 294 1 3135 208 63 12 chr4 42470803 42471567 -159856780 - L1MB7 LINE L1 -11 6173 5371 1777 129 7 52 chr4 42472333 42472643 -159855704 + AluJo SINE Alu 1 296 -16 1462 167 0 72 chr4 42472920 42473031 -159855316 + AluJb SINE Alu 27 144 -168 2269 116 0 3 chr4 42473031 42473333 -159855014 + AluSx SINE Alu 1 301 -11 1462 167 0 72 chr4 42473333 42473514 -159854833 + AluJb SINE Alu 144 298 -14 2239 100 3 3 chr4 42473570 42473869 -159854478 + AluSq SINE Alu 1 299 -14 922 198 33 0 chr4 42474454 42474636 -159853711 - MER5A DNA MER1_type -1 188 1 703 341 90 34 chr4 42474956 42475492 -159852855 + L2 LINE L2 2366 2931 -383 294 278 111 11 chr4 42475778 42475868 -159852479 + MIR3 SINE MIR 3 101 -107 286 345 60 0 chr4 42475923 42476039 -159852308 + MIR3 SINE MIR 85 207 -1 286 250 112 35 chr4 42476769 42476885 -159851462 - MIR SINE MIR -74 188 64 2279 120 0 0 chr4 42477108 42477417 -159850930 + AluSx SINE Alu 1 309 -3 351 274 40 50 chr4 42479213 42479414 -159848933 + L1ME LINE L1 5576 5774 -347 220 261 116 0 chr4 42479955 42480024 -159848323 - MIR SINE MIR -95 113 37 293 286 0 0 chr4 42481010 42481087 -159847260 - MIR SINE MIR -27 235 159 597 68 57 0 chr4 42481528 42481616 -159846731 - L1PA13 LINE L1 -5 6158 6066 949 181 0 33 chr4 42482634 42482816 -159845531 - AluJo SINE Alu -15 297 122 23 0 0 0 chr4 42483552 42483575 -159844772 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr4 42483695 42483732 -159844615 + AT_rich Low_complexity Low_complexity 1 37 0 1938 154 10 0 chr4 42483782 42484074 -159844273 - AluSx SINE Alu -17 295 1 23 78 0 0 chr4 42484138 42484189 -159844158 + AT_rich Low_complexity Low_complexity 1 51 0 437 227 169 5 chr4 42484264 42484467 -159843880 - L1ME LINE L1 -586 5576 5342 216 0 0 0 chr4 42484467 42484491 -159843856 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 1194 281 78 17 chr4 42484496 42485215 -159843132 - L2 LINE L2 -12 3301 2534 1838 135 0 24 chr4 42485396 42485906 -159842441 - AluSx SINE Alu 0 503 1 3727 77 7 75 chr4 42485411 42485916 -159842431 - L1PB1 LINE L1 -1 6150 5997 2168 119 3 0 chr4 42485916 42486209 -159842138 - AluSg SINE Alu -16 294 1 3727 77 7 75 chr4 42486209 42486589 -159841758 - L1PB1 LINE L1 -154 5997 5593 2095 145 13 26 chr4 42486617 42486838 -159841509 - L1PB1 LINE L1 -542 5609 5387 2450 67 0 13 chr4 42486838 42487138 -159841209 - AluY SINE Alu -15 296 1 2095 145 13 26 chr4 42487138 42487508 -159840839 - L1PB1 LINE L1 -764 5387 5030 2298 109 3 0 chr4 42488957 42489260 -159839087 - AluSp SINE Alu -5 308 5 411 283 70 108 chr4 42489272 42489587 -159838760 - L3 LINE CR1 -905 672 370 241 296 49 0 chr4 42489606 42489687 -159838660 - MIR SINE MIR -67 141 57 478 185 33 0 chr4 42489690 42489782 -159838565 + MLT1J2 LTR MaLR 6 100 -350 1933 102 0 79 chr4 42490370 42490674 -159837673 + AluSc SINE Alu 23 302 -7 208 331 42 0 chr4 42491107 42491210 -159837137 - MER5B DNA MER1_type -26 163 46 1213 208 47 15 chr4 42491226 42491584 -159836763 - L1MA6 LINE L1 -11 6289 5933 1059 164 72 0 chr4 42491653 42491848 -159836499 - MER3 DNA MER1_type 0 209 1 485 296 34 48 chr4 42491849 42492055 -159836292 + MIR SINE MIR 32 234 -28 404 279 53 10 chr4 42493779 42493987 -159834360 + L1ME4a LINE L1 5641 5857 -264 1571 271 27 7 chr4 42494116 42494530 -159833817 + MLT1K LTR MaLR 161 582 -6 370 229 112 22 chr4 42494551 42494730 -159833617 + L1ME4a LINE L1 5879 6073 -48 309 51 0 0 chr4 42494747 42494790 -159833557 + (TG)n Simple_repeat Simple_repeat 1 82 0 309 51 0 0 chr4 42494790 42494829 -159833518 + (TG)n Simple_repeat Simple_repeat 2 40 0 859 263 134 37 chr4 42494931 42495387 -159832960 + MLT1J LTR MaLR 12 511 0 401 237 53 9 chr4 42495638 42495752 -159832595 + LTR67 LTR ERVL 439 557 0 324 0 0 0 chr4 42495809 42495845 -159832502 + (CA)n Simple_repeat Simple_repeat 1 36 0 2126 127 0 23 chr4 42496300 42496607 -159831740 + AluSx SINE Alu 1 300 -12 2938 155 19 8 chr4 42496846 42497380 -159830967 + L1MC3 LINE L1 7246 7785 0 682 198 73 57 chr4 42497383 42497560 -159830787 + MIR SINE MIR 62 241 -21 322 200 0 0 chr4 42497591 42497651 -159830696 - Tigger5 DNA MER2_type 0 2323 2264 * 354 171 13 26 chr4 42497647 42497723 -159830624 + Tigger5 DNA MER2_type 2242 2316 -7 278 192 0 0 chr4 42497726 42497778 -159830569 - Tigger5 DNA MER2_type -2244 79 28 2324 88 7 0 chr4 42498629 42498926 -159829421 + AluSx SINE Alu 1 299 -13 26 0 0 0 chr4 42499993 42500019 -159828328 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr4 42501159 42501192 -159827155 + AT_rich Low_complexity Low_complexity 1 33 0 282 278 90 38 chr4 42503764 42503816 -159824531 + MER20B DNA MER1_type 4 52 -731 351 0 0 0 chr4 42503816 42503855 -159824492 + (TGG)n Simple_repeat Simple_repeat 2 40 0 282 278 90 38 chr4 42503855 42503935 -159824412 + MER20B DNA MER1_type 52 143 -640 353 267 164 45 chr4 42504087 42504379 -159823968 - L1MC4a LINE L1 -1879 5929 5603 1259 182 0 0 chr4 42504379 42504577 -159823770 - AluY SINE Alu -11 300 103 1902 110 0 4 chr4 42504577 42504832 -159823515 - AluSx SINE Alu -58 254 1 500 226 77 10 chr4 42504837 42505045 -159823302 - L1MC4a LINE L1 -681 5483 5262 791 248 128 16 chr4 42505270 42505520 -159822827 + L2 LINE L2 3036 3313 0 31 76 0 0 chr4 42505572 42505638 -159822709 + AT_rich Low_complexity Low_complexity 1 66 0 1546 173 59 0 chr4 42505674 42505946 -159822401 - AluJb SINE Alu -24 288 1 224 308 77 0 chr4 42506599 42506677 -159821670 + MIR3 SINE MIR 106 189 -19 22 35 0 0 chr4 42507086 42507115 -159821232 + AT_rich Low_complexity Low_complexity 1 29 0 234 341 186 21 chr4 42507223 42507595 -159820752 - L2 LINE L2 -570 2744 2312 1461 174 87 0 chr4 42507896 42508149 -159820198 + AluSx SINE Alu 1 275 -37 22 0 0 0 chr4 42508479 42508501 -159819846 + AT_rich Low_complexity Low_complexity 1 22 0 342 220 211 0 chr4 42509619 42509728 -159818619 + MIR3 SINE MIR 8 139 -69 270 329 48 72 chr4 42509828 42509995 -159818352 - MIR SINE MIR -50 212 50 227 274 121 24 chr4 42510050 42510174 -159818173 - MIR SINE MIR -63 199 64 203 354 52 66 chr4 42511646 42511858 -159816489 + L2 LINE L2 2669 2877 -437 1892 127 7 11 chr4 42511877 42512184 -159816163 + AluSg SINE Alu 1 306 0 180 0 0 0 chr4 42512562 42512582 -159815765 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2155 116 0 10 chr4 42514200 42514502 -159813845 - AluSx SINE Alu -13 299 1 238 291 0 81 chr4 42514502 42514551 -159813796 + L2 LINE L2 3189 3231 -41 1317 192 10 54 chr4 42514551 42514883 -159813464 - AluJb SINE Alu 0 319 1 238 291 0 81 chr4 42514883 42514918 -159813429 + L2 LINE L2 3231 3267 -5 943 236 80 58 chr4 42515168 42515345 -159813002 + MLT1I LTR MaLR 3 175 -234 2314 105 7 0 chr4 42515345 42515650 -159812697 + AluSq SINE Alu 3 309 -4 943 236 80 58 chr4 42515650 42515870 -159812477 + MLT1I LTR MaLR 175 409 0 290 326 95 0 chr4 42516284 42516431 -159811916 - MIR SINE MIR -101 161 1 2246 112 0 0 chr4 42516857 42517153 -159811194 - AluSx SINE Alu -16 296 1 282 220 121 21 chr4 42517193 42517334 -159811013 - MER103 DNA DNA -1 165 11 794 160 0 0 chr4 42517689 42517820 -159810527 - FLAM_C SINE Alu 0 133 3 407 322 132 58 chr4 42518920 42519504 -159808843 - L1M2 LINE L1 -5450 1399 773 206 267 0 0 chr4 42519620 42519680 -159808667 + G-rich Low_complexity Low_complexity 2 61 0 200 333 14 14 chr4 42520163 42520232 -159808115 - L2 LINE L2 -76 3196 3128 2125 126 0 3 chr4 42521104 42521420 -159806927 + AluSc SINE Alu 1 309 0 719 229 254 22 chr4 42521588 42521954 -159806393 + L2 LINE L2 2863 3313 0 2015 142 0 0 chr4 42522102 42522397 -159805950 + AluSx SINE Alu 1 295 -17 2227 112 3 3 chr4 42523207 42523511 -159804836 - AluSc SINE Alu -5 304 1 1344 144 194 11 chr4 42523776 42524039 -159804308 - AluJo SINE Alu -1 311 1 366 337 67 70 chr4 42524461 42524919 -159803428 + L2 LINE L2 2692 3180 -92 303 28 0 0 chr4 42524931 42524967 -159803380 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2231 62 0 78 chr4 42525323 42525644 -159802703 + AluY SINE Alu 1 296 -15 2131 92 43 13 chr4 42526882 42527185 -159801162 + AluSq SINE Alu 1 312 -1 1116 192 25 16 chr4 42527541 42527786 -159800561 - L1ME1 LINE L1 -5 6161 5915 425 316 55 73 chr4 42527789 42528061 -159800286 + L2 LINE L2 3042 3308 -5 1859 120 15 99 chr4 42528227 42528560 -159799787 + AluJb SINE Alu 1 305 -7 283 238 0 159 chr4 42528654 42528710 -159799637 + MIR SINE MIR 136 199 -63 712 111 86 0 chr4 42528710 42528827 -159799520 + L1PB1 LINE L1 6025 6151 0 283 238 0 159 chr4 42528827 42528866 -159799481 + MIR SINE MIR 199 201 -61 704 172 16 160 chr4 42528866 42528964 -159799383 + MER20 DNA MER1_type 1 41 -178 1554 197 25 0 chr4 42528964 42529238 -159799109 + AluJo SINE Alu 1 281 -31 704 172 16 160 chr4 42529238 42529395 -159798952 + MER20 DNA MER1_type 41 219 0 283 238 0 159 chr4 42529395 42529449 -159798898 + MIR SINE MIR 201 262 0 591 318 35 10 chr4 42529530 42529728 -159798619 + MIR SINE MIR 48 250 -12 2289 111 0 3 chr4 42530488 42530795 -159797552 + AluSc SINE Alu 1 306 -3 250 294 42 7 chr4 42530930 42531073 -159797274 + L1ME LINE L1 5181 5328 -818 306 278 122 0 chr4 42531080 42531195 -159797152 + L1ME LINE L1 5352 5480 -641 1673 177 31 7 chr4 42531334 42531628 -159796719 - AluJo SINE Alu -11 301 1 2269 98 16 7 chr4 42532372 42532679 -159795668 - AluSg SINE Alu 0 310 1 207 133 0 0 chr4 42533515 42533560 -159794787 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 803 148 66 0 chr4 42534091 42534213 -159794134 - FLAM_A SINE Alu -2 131 2 206 170 0 21 chr4 42534797 42534844 -159793503 + CT-rich Low_complexity Low_complexity 1 46 0 6284 145 23 17 chr4 42534850 42536752 -159791595 - L1MA4 LINE L1 -21 6921 5009 2218 126 0 3 chr4 42536752 42537061 -159791286 - AluSx SINE Alu -4 308 1 9049 202 40 36 chr4 42537062 42539469 -159788878 - L1MA4 LINE L1 -2472 4316 1764 2071 118 0 36 chr4 42539469 42539773 -159788574 - AluSq SINE Alu -20 293 1 9049 202 40 36 chr4 42539773 42541528 -159786819 - L1MA4 LINE L1 -5024 1764 17 2951 199 22 17 chr4 42541540 42542669 -159785678 - L1MC2 LINE L1 -517 5827 4697 301 134 104 0 chr4 42542669 42542736 -159785611 - L1M4c LINE L1 -5507 1139 1066 1980 227 41 98 chr4 42542888 42542979 -159785368 - L1M4c LINE L1 -5475 1067 972 207 0 0 0 chr4 42542979 42543002 -159785345 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1761 164 4 4 chr4 42543005 42543285 -159785062 - AluJb SINE Alu -32 280 1 1980 227 41 98 chr4 42543285 42543997 -159784350 - L1M4c LINE L1 -5572 970 322 227 231 19 0 chr4 42547735 42547787 -159780560 + L2 LINE L2 3261 3313 0 2165 125 0 10 chr4 42548621 42548925 -159779422 + AluSx SINE Alu 1 301 -11 239 173 0 19 chr4 42549112 42549164 -159779183 + (CAA)n Simple_repeat Simple_repeat 2 52 0 422 300 68 46 chr4 42549274 42549554 -159778793 + L2 LINE L2 3028 3313 0 23 0 0 0 chr4 42549621 42549644 -159778703 + GC_rich Low_complexity Low_complexity 1 23 0 225 164 73 0 chr4 42550003 42550058 -159778289 + A-rich Low_complexity Low_complexity 2 60 0 5747 118 101 72 chr4 42550285 42550521 -159777826 - Tigger3b DNA MER2_type -1824 1204 976 2290 131 48 14 chr4 42550521 42550873 -159777474 + THE1B LTR MaLR 1 364 0 5747 118 101 72 chr4 42550873 42551325 -159777022 - Tigger3b DNA MER2_type -2052 976 539 183 42 0 0 chr4 42551325 42551349 -159776998 + (CA)n Simple_repeat Simple_repeat 2 25 0 5747 118 101 72 chr4 42551349 42551829 -159776518 - Tigger3b DNA MER2_type -2489 539 1 1159 197 150 8 chr4 42551829 42552062 -159776285 - MLT1A1 LTR MaLR -32 333 68 497 234 11 0 chr4 42552062 42552156 -159776191 + MER2 DNA MER2_type 1 95 -250 1121 185 45 0 chr4 42552159 42552359 -159775988 + AluJo SINE Alu 85 293 -19 881 169 97 68 chr4 42552359 42552607 -159775740 + MER2 DNA MER2_type 91 345 0 415 127 0 28 chr4 42552607 42552678 -159775669 - MLT1A1 LTR MaLR -296 69 1 1234 167 23 5 chr4 42552894 42553115 -159775232 - MLT1C LTR MaLR 0 467 243 498 221 44 108 chr4 42553365 42553614 -159774733 - MLT1C LTR MaLR -229 238 6 347 246 36 96 chr4 42554391 42554558 -159773789 - MLT1J LTR MaLR 0 511 355 199 204 0 23 chr4 42555415 42555459 -159772888 - L2 LINE L2 -1792 1522 1480 22 0 0 0 chr4 42555501 42555523 -159772824 + AT_rich Low_complexity Low_complexity 1 22 0 2304 107 3 0 chr4 42555527 42555836 -159772511 + AluSp SINE Alu 1 310 -3 482 235 25 101 chr4 42555870 42556108 -159772239 + L1ME4a LINE L1 5696 5915 -206 26 0 0 0 chr4 42556291 42556317 -159772030 + AT_rich Low_complexity Low_complexity 1 26 0 2098 137 3 0 chr4 42556520 42556813 -159771534 + AluSq SINE Alu 1 294 -19 31 26 0 0 chr4 42556813 42556851 -159771496 + AT_rich Low_complexity Low_complexity 1 38 0 353 250 12 0 chr4 42556873 42556953 -159771394 - MER63 DNA MER1_type -311 751 671 2141 168 28 14 chr4 42557028 42557391 -159770956 + MSTA LTR MaLR 61 428 0 10304 156 35 2 chr4 42557391 42558989 -159769358 + MSTA-int LTR MaLR 1 1651 0 2362 162 43 24 chr4 42558989 42559409 -159768938 + MSTA LTR MaLR 1 428 0 520 299 78 0 chr4 42559410 42559767 -159768580 + L1ME LINE L1 5285 5701 -420 1965 194 80 48 chr4 42560182 42560352 -159767995 + L1MB8 LINE L1 3943 4106 -2040 1570 183 3 40 chr4 42560352 42560652 -159767695 - AluJo SINE Alu -23 289 1 1965 194 80 48 chr4 42560652 42560801 -159767546 + L1MB8 LINE L1 4106 4249 -1897 1607 205 57 17 chr4 42560801 42561152 -159767195 - MLT1A1 LTR MaLR 0 365 1 1965 194 80 48 chr4 42561152 42561408 -159766939 + L1MB8 LINE L1 4249 4537 -1609 1033 119 0 7 chr4 42561408 42561551 -159766796 - AluSg/x SINE Alu -8 304 163 274 204 0 0 chr4 42561551 42561600 -159766747 + L1MB8 LINE L1 5510 5558 -622 541 222 9 0 chr4 42561604 42561712 -159766635 + LTR47A LTR ERVL 6 114 -338 293 234 0 0 chr4 42561785 42561849 -159766498 - HERVL18 LTR ERVL -4723 1324 1261 2180 150 62 36 chr4 42561915 42562336 -159766011 - MER66B LTR ERV1 -54 432 1 319 197 53 0 chr4 42563120 42563196 -159765151 + MER4B-int LTR ERV1 5996 6075 -683 1882 211 6 64 chr4 42563197 42563667 -159764680 + LTR47B LTR ERVL 1 443 0 3002 154 76 36 chr4 42563667 42564269 -159764078 + L1MB8 LINE L1 5553 6178 0 904 175 118 5 chr4 42564487 42564705 -159763642 + MER33 DNA MER1_type 1 219 -105 249 241 19 0 chr4 42564844 42564898 -159763449 - MIR SINE MIR -195 67 13 360 202 18 9 chr4 42564900 42565015 -159763332 - L1ME LINE L1 -5182 888 782 6685 75 13 46 chr4 42565027 42566912 -159761435 - SVA Other Other -518 1379 1 2047 133 0 3 chr4 42567066 42567399 -159760948 - AluSx SINE Alu 0 332 1 2036 112 4 0 chr4 42569202 42569479 -159758868 + AluSp SINE Alu 28 305 -8 8091 21 0 0 chr4 42569765 42571233 -159757114 - L1PA3 LINE L1 -3 6152 4680 2088 78 0 58 chr4 42571388 42571682 -159756665 - AluY SINE Alu 0 311 35 2218 104 3 0 chr4 42571911 42572199 -159756148 - AluSx SINE Alu -23 289 1 287 338 42 7 chr4 42572241 42572383 -159755964 - MIR SINE MIR -50 212 66 1880 170 7 0 chr4 42572398 42572692 -159755655 - AluJb SINE Alu -16 296 1 1006 221 154 78 chr4 42572821 42573255 -159755092 + MLT1D LTR MaLR 1 505 0 1261 159 18 14 chr4 42573476 42573696 -159754651 + AluJo SINE Alu 90 310 -2 2252 98 3 7 chr4 42574243 42574540 -159753807 - AluSg SINE Alu -14 296 1 463 236 63 81 chr4 42574847 42575021 -159753326 + L2 LINE L2 3097 3267 -5 22 35 0 0 chr4 42575097 42575126 -159753221 + AT_rich Low_complexity Low_complexity 1 29 0 230 143 0 41 chr4 42575323 42575372 -159752975 - L1M LINE L1 -791 5389 5343 839 182 0 14 chr4 42575376 42575519 -159752828 - L1PB4 LINE L1 -11 6145 6005 344 227 13 0 chr4 42575712 42575787 -159752560 - MLT1G LTR MaLR 0 555 480 258 130 43 0 chr4 42575816 42575862 -159752485 - L1M3 LINE L1 -377 5791 5744 258 143 0 0 chr4 42575863 42575912 -159752435 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 2688 165 25 34 chr4 42575916 42576205 -159752142 - L1M3 LINE L1 -389 5779 5489 1927 107 10 45 chr4 42576205 42576520 -159751827 - AluSq SINE Alu 0 308 4 2688 165 25 34 chr4 42576520 42576834 -159751513 - L1M3 LINE L1 -679 5489 5180 719 276 53 31 chr4 42576834 42577059 -159751288 - MLT1G LTR MaLR -293 297 68 2238 106 3 0 chr4 42577074 42577366 -159750981 - AluSx SINE Alu -19 293 1 295 284 46 0 chr4 42577417 42577526 -159750821 + HAL1 LINE L1 1475 1588 -919 448 262 107 40 chr4 42577902 42578608 -159749739 + L1MEc LINE L1 2037 2765 -3450 2384 83 0 16 chr4 42578627 42578941 -159749406 + AluY SINE Alu 1 309 -2 1479 127 38 8 chr4 42578949 42579186 -159749161 + THE1B LTR MaLR 1 244 -120 1628 146 18 7 chr4 42579529 42579803 -159748544 - AluSc SINE Alu -32 277 1 236 241 37 0 chr4 42579813 42579867 -159748480 - MLT1E1 LTR MaLR -455 112 57 * 273 284 47 39 chr4 42579837 42579905 -159748442 - MLT1G1 LTR MaLR -467 128 57 2639 137 74 29 chr4 42579905 42580281 -159748066 + MLT1C LTR MaLR 1 402 -65 1809 162 38 0 chr4 42580281 42580571 -159747776 - AluSx SINE Alu -11 301 1 2639 137 74 29 chr4 42580571 42580641 -159747706 + MLT1C LTR MaLR 402 467 0 273 284 47 39 chr4 42580641 42580699 -159747648 - MLT1G1 LTR MaLR -538 57 1 1762 166 0 7 chr4 42580814 42581103 -159747244 + AluJo SINE Alu 1 287 -25 1957 125 0 11 chr4 42581806 42582086 -159746261 - AluJb SINE Alu -27 285 9 2237 111 0 0 chr4 42582181 42582479 -159745868 + AluY SINE Alu 1 298 -13 380 40 100 0 chr4 42582479 42582579 -159745768 + (TA)n Simple_repeat Simple_repeat 1 110 0 278 222 0 0 chr4 42582892 42582946 -159745401 - L2 LINE L2 -13 3259 3206 21 57 0 0 chr4 42583491 42583526 -159744821 + AT_rich Low_complexity Low_complexity 1 35 0 1837 164 10 10 chr4 42583718 42584022 -159744325 + AluJb SINE Alu 1 304 -8 2111 76 29 4 chr4 42584794 42585118 -159743229 + AluSq SINE Alu 1 331 0 2017 110 3 30 chr4 42586356 42586657 -159741690 + AluSx SINE Alu 1 293 -19 549 302 36 5 chr4 42587021 42587241 -159741106 + MIR SINE MIR 23 248 -14 315 258 32 54 chr4 42587558 42587651 -159740696 - MIR SINE MIR -114 148 58 2024 102 10 10 chr4 42588050 42588344 -159740003 - AluSg SINE Alu 0 310 17 294 177 0 32 chr4 42588653 42588715 -159739632 - MLT1E1 LTR MaLR -581 73 14 2140 135 13 0 chr4 42588752 42589056 -159739291 + AluSg SINE Alu 1 308 -2 2230 102 3 7 chr4 42589459 42589754 -159738593 + AluSq SINE Alu 4 297 -16 962 202 0 6 chr4 42590053 42590236 -159738111 + FRAM SINE Alu 1 176 0 905 281 88 48 chr4 42590257 42590330 -159738017 + L1M4 LINE L1 3705 3774 -2372 354 45 0 0 chr4 42590330 42590374 -159737973 + (CA)n Simple_repeat Simple_repeat 2 45 0 905 281 88 48 chr4 42590374 42591133 -159737214 + L1M4 LINE L1 3774 4570 -1576 404 306 102 46 chr4 42591279 42591739 -159736608 + L1MA4A LINE L1 4912 5397 -749 2326 107 10 0 chr4 42591878 42592186 -159736161 + AluSx SINE Alu 1 311 -1 2355 85 3 0 chr4 42592340 42592633 -159735714 + AluSp SINE Alu 1 294 -19 613 253 141 24 chr4 42594045 42594225 -159734122 - LTR33 LTR ERVL -4 517 359 189 0 0 0 chr4 42594225 42594246 -159734101 + (CAGAGA)n Simple_repeat Simple_repeat 2 22 0 613 253 141 24 chr4 42594246 42594261 -159734086 - LTR33 LTR ERVL -162 359 347 282 29 0 0 chr4 42594261 42594296 -159734051 + (CA)n Simple_repeat Simple_repeat 2 36 0 613 253 141 24 chr4 42594296 42594348 -159733999 - LTR33 LTR ERVL -174 347 240 3188 138 113 63 chr4 42594395 42594540 -159733807 + L1MA4A LINE L1 5520 5656 -647 2001 147 0 16 chr4 42594540 42594853 -159733494 + AluJb SINE Alu 5 312 0 3188 138 113 63 chr4 42594853 42595432 -159732915 + L1MA4A LINE L1 5656 6280 -23 603 262 33 11 chr4 42595433 42595616 -159732731 - LTR33 LTR ERVL -331 190 4 185 333 40 13 chr4 42595874 42595949 -159732398 - L2 LINE L2 -1 3312 3236 189 239 65 0 chr4 42596081 42596127 -159732220 + L2 LINE L2 3265 3313 0 1097 107 0 0 chr4 42596408 42596557 -159731790 + L1P5 LINE L1 5520 5668 -488 411 109 0 0 chr4 42596561 42596616 -159731731 + Alu SINE Alu 5 59 -250 2308 100 3 0 chr4 42597329 42597628 -159730719 + AluSc SINE Alu 1 300 -9 1086 252 55 77 chr4 42597929 42598490 -159729857 + MER39 LTR ERV1 1 707 0 189 282 0 0 chr4 42598961 42599000 -159729347 - L2 LINE L2 -95 3218 3180 595 303 0 56 chr4 42599201 42599399 -159728948 + L2 LINE L2 3081 3267 -5 899 170 7 7 chr4 42599406 42599559 -159728788 + FRAM SINE Alu 1 153 -23 236 288 220 0 chr4 42599571 42599689 -159728658 - MIR SINE MIR -13 249 106 5245 154 42 22 chr4 42601613 42602071 -159726276 + L1MA5 LINE L1 5325 5772 -528 2299 117 66 26 chr4 42602071 42602421 -159725926 - THE1B LTR MaLR 0 364 1 5245 154 42 22 chr4 42602421 42602914 -159725433 + L1MA5 LINE L1 5772 6295 -5 777 269 43 5 chr4 42602926 42603134 -159725213 - MLT1L LTR MaLR -23 592 377 2377 88 0 0 chr4 42603183 42603478 -159724869 - AluSg SINE Alu -15 295 1 584 194 0 0 chr4 42603516 42603609 -159724738 - FLAM_A SINE Alu -45 97 5 504 282 112 50 chr4 42603633 42603874 -159724473 - MLT1L LTR MaLR -335 280 25 2234 98 0 3 chr4 42603928 42604223 -159724124 - AluSg SINE Alu -16 294 1 2878 96 3 3 chr4 42604807 42605170 -159723177 - THE1B LTR MaLR -1 363 1 393 200 9 36 chr4 42605172 42605282 -159723065 + LTR67 LTR ERVL 428 534 -23 628 234 35 35 chr4 42605308 42605479 -159722868 - MIR3 SINE MIR -3 205 35 1060 229 12 33 chr4 42606019 42606264 -159722083 - MIR SINE MIR -21 241 2 523 207 0 0 chr4 42606308 42606390 -159721957 - AluS SINE Alu -231 82 1 21 0 0 0 chr4 42606734 42606755 -159721592 + AT_rich Low_complexity Low_complexity 1 21 0 2145 111 4 0 chr4 42607083 42607393 -159720954 + AluSx SINE Alu 1 311 0 2746 129 65 0 chr4 42607638 42608040 -159720307 - MSTA LTR MaLR 0 428 1 1593 217 20 14 chr4 42608065 42608415 -159719932 - LTR10D LTR ERV1 0 513 162 251 308 88 11 chr4 42608855 42608946 -159719401 + L2 LINE L2 3174 3271 -1 * 274 180 0 101 chr4 42608945 42609034 -159719313 - L2 LINE L2 -173 3099 3020 1853 134 40 3 chr4 42609790 42610089 -159718258 - AluSg SINE Alu 0 310 1 189 350 152 41 chr4 42610396 42610981 -159717366 - L2 LINE L2 -465 2849 2200 971 172 6 18 chr4 42611290 42611453 -159716894 - FRAM SINE Alu -5 161 1 252 0 0 0 chr4 42612972 42613000 -159715347 + (TG)n Simple_repeat Simple_repeat 2 29 0 257 227 55 45 chr4 42613039 42613149 -159715198 - L1MC/D LINE L1 -1921 5887 5777 725 289 179 7 chr4 42613479 42613780 -159714567 - L2 LINE L2 0 3313 2961 707 274 14 28 chr4 42614255 42614470 -159713877 + MIR SINE MIR 40 251 -11 194 91 30 0 chr4 42614471 42614504 -159713843 + (CACCAT)n Simple_repeat Simple_repeat 3 36 0 734 266 51 74 chr4 42615074 42615330 -159713017 + MIR SINE MIR 12 261 -1 404 52 39 26 chr4 42616054 42616068 -159712279 + (GAAA)n Simple_repeat Simple_repeat 3 15 -65 2106 119 13 7 chr4 42616068 42616378 -159711969 + AluSx SINE Alu 1 312 0 404 52 39 26 chr4 42616378 42616440 -159711907 + (GAAA)n Simple_repeat Simple_repeat 15 80 0 234 0 0 0 chr4 42616912 42616938 -159711409 + (CA)n Simple_repeat Simple_repeat 2 27 0 2111 115 3 13 chr4 42618158 42618470 -159709877 - AluSx SINE Alu -3 309 1 2043 86 2 176 chr4 42619528 42619936 -159708411 - MER1B DNA MER1_type 0 337 1 270 139 0 0 chr4 42620012 42620055 -159708292 + L2 LINE L2 3271 3313 0 2472 66 0 10 chr4 42620059 42620363 -159707984 + AluSc SINE Alu 1 301 -8 2235 87 7 7 chr4 42621217 42621506 -159706841 - AluSc SINE Alu -9 300 12 2576 125 28 14 chr4 42622196 42622555 -159705792 + THE1B LTR MaLR 1 364 0 506 262 44 38 chr4 42623582 42623765 -159704582 - MIR SINE MIR -20 242 59 609 172 48 86 chr4 42623843 42624029 -159704318 - MER96B DNA MER1_type? -238 179 1 213 184 0 0 chr4 42624194 42624232 -159704115 + L2 LINE L2 3217 3254 -18 2148 135 0 6 chr4 42624239 42624551 -159703796 + AluSx SINE Alu 1 310 -2 543 248 163 0 chr4 42625302 42625455 -159702892 + MER5A DNA MER1_type 12 189 0 310 172 0 62 chr4 42625669 42625733 -159702614 + MIR SINE MIR 91 150 -58 2276 91 0 7 chr4 42626394 42626692 -159701655 + AluSx SINE Alu 1 296 -16 1656 178 107 67 chr4 42626803 42627252 -159701095 + MLT1C LTR MaLR 1 467 0 244 301 12 12 chr4 42627410 42627493 -159700854 - MARNA DNA Mariner -27 559 477 2336 92 3 0 chr4 42627582 42627888 -159700459 + AluSg SINE Alu 2 308 -2 204 43 43 43 chr4 42628024 42628037 -159700310 + (CAAA)n Simple_repeat Simple_repeat 2 14 -34 2492 70 0 6 chr4 42628037 42628350 -159699997 + AluY SINE Alu 1 311 0 204 43 43 43 chr4 42628350 42628383 -159699964 + (CAAA)n Simple_repeat Simple_repeat 13 48 0 387 242 142 74 chr4 42629081 42629215 -159699132 - MIR SINE MIR -19 243 91 2241 98 7 10 chr4 42629215 42629520 -159698827 + AluSq SINE Alu 1 304 -9 387 242 142 74 chr4 42629520 42629575 -159698772 - MIR SINE MIR -171 91 41 295 307 31 24 chr4 42629682 42629809 -159698538 + L1ME LINE L1 5629 5756 -365 249 108 0 0 chr4 42629998 42630035 -159698312 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 2425 82 0 0 chr4 42631279 42631573 -159696774 + AluSc SINE Alu 1 294 -15 1875 179 0 0 chr4 42631634 42631946 -159696401 + AluJo SINE Alu 1 312 0 249 278 0 0 chr4 42632400 42632454 -159695893 + L2 LINE L2 3230 3283 -30 1062 96 0 84 chr4 42632530 42632697 -159695650 - AluSg/x SINE Alu -84 226 74 209 211 0 0 chr4 42634124 42634162 -159694185 + GA-rich Low_complexity Low_complexity 2 39 0 269 275 44 33 chr4 42634500 42634591 -159693756 - MIR SINE MIR -95 113 22 2214 110 7 13 chr4 42634626 42634934 -159693413 - AluSx SINE Alu -6 306 1 304 313 30 38 chr4 42635757 42635888 -159692459 + L2 LINE L2 3137 3266 -6 25 31 0 0 chr4 42635905 42635937 -159692410 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr4 42635950 42635986 -159692361 + AT_rich Low_complexity Low_complexity 1 36 0 2307 82 0 0 chr4 42636451 42636757 -159691590 + AluSg SINE Alu 3 308 0 383 265 134 26 chr4 42636758 42636846 -159691501 - L2 LINE L2 -146 3167 3090 1953 190 3 11 chr4 42636846 42637214 -159691133 + MLT1A1 LTR MaLR 1 365 0 383 265 134 26 chr4 42637214 42637431 -159690916 - L2 LINE L2 -223 3090 2829 202 303 0 64 chr4 42637546 42637655 -159690692 - L2 LINE L2 -226 3046 2945 222 149 0 21 chr4 42637659 42637675 -159690672 + (GA)n Simple_repeat Simple_repeat 2 17 -30 2138 128 0 3 chr4 42637675 42637973 -159690374 + AluSx SINE Alu 1 297 -15 222 149 0 21 chr4 42637973 42638003 -159690344 + (GA)n Simple_repeat Simple_repeat 17 47 0 330 285 27 37 chr4 42638155 42638370 -159689977 + MIR3 SINE MIR 3 212 -50 504 278 21 31 chr4 42640159 42640350 -159687997 - MIR SINE MIR -4 258 70 2477 68 3 0 chr4 42640910 42641206 -159687141 + AluSc SINE Alu 1 297 -12 219 300 0 0 chr4 42641281 42641331 -159687016 - L2 LINE L2 -17 3255 3206 398 246 189 0 chr4 42641777 42641952 -159686395 + MIR SINE MIR 48 255 -7 666 289 71 0 chr4 42641963 42642174 -159686173 + MIR SINE MIR 7 232 -30 2237 92 0 0 chr4 42642191 42642504 -159685843 + AluSc SINE Alu 1 313 0 1695 150 57 21 chr4 42642869 42643149 -159685198 + AluJo SINE Alu 1 290 -22 218 288 0 45 chr4 42644022 42644088 -159684259 - L2 LINE L2 -10 3303 3241 2115 105 11 0 chr4 42644202 42644487 -159683860 - AluSx SINE Alu -7 305 18 1884 114 43 11 chr4 42644589 42644870 -159683477 + AluSx SINE Alu 15 304 -8 2224 103 7 3 chr4 42645583 42645883 -159682464 + AluSg SINE Alu 1 301 -9 2394 96 3 3 chr4 42646104 42646453 -159681894 + AluSx SINE Alu 1 349 0 669 251 46 0 chr4 42646569 42646764 -159681583 + L2 LINE L2 2418 2621 -693 845 243 52 24 chr4 42646866 42647195 -159681152 + LTR16B LTR ERVL 114 451 -13 927 271 41 30 chr4 42647199 42647748 -159680599 + L2 LINE L2 2614 3156 -157 246 172 54 86 chr4 42647899 42647992 -159680355 + MLT1I LTR MaLR 319 408 -1 2247 114 0 19 chr4 42647999 42648314 -159680033 - AluSx SINE Alu -3 309 1 257 247 14 0 chr4 42648837 42648910 -159679437 + L1MC4a LINE L1 5393 5466 -2342 765 204 105 0 chr4 42648926 42649117 -159679230 - MIR SINE MIR -1 261 51 271 203 43 0 chr4 42649126 42649195 -159679152 + L1MC4a LINE L1 5845 5916 -1892 267 270 20 20 chr4 42649209 42649309 -159679038 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 22 0 0 0 chr4 42650338 42650360 -159677987 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr4 42650490 42650534 -159677813 + AT_rich Low_complexity Low_complexity 1 44 0 200 316 38 0 chr4 42651261 42651340 -159677007 + L2 LINE L2 3178 3259 -13 243 61 0 0 chr4 42651357 42651390 -159676957 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 2196 115 0 0 chr4 42651446 42651741 -159676606 + AluSq SINE Alu 17 311 -2 2215 112 0 13 chr4 42652845 42653150 -159675197 - AluSx SINE Alu -11 301 1 344 214 0 56 chr4 42653202 42653291 -159675056 + MIR SINE MIR 49 132 -130 216 293 95 43 chr4 42655760 42655958 -159672389 + MIR SINE MIR 34 246 -16 * 971 265 4 19 chr4 42655930 42656187 -159672160 - MIR SINE MIR -4 258 6 2020 109 3 42 chr4 42656674 42656986 -159671361 + AluSx SINE Alu 1 300 -12 3997 158 7 40 chr4 42657309 42658057 -159670290 - L1MB3 LINE L1 0 6183 5461 612 129 2 0 chr4 42658084 42658184 -159670163 - L1P2 LINE L1 -674 5480 5379 22 35 0 0 chr4 42658186 42658215 -159670132 + AT_rich Low_complexity Low_complexity 1 29 0 712 282 97 63 chr4 42658772 42659152 -159669195 + LTR16A LTR ERVL 52 444 -6 260 188 0 0 chr4 42659160 42659208 -159669139 - L1MC/D LINE L1 -1977 5831 5784 411 127 64 13 chr4 42659209 42659366 -159668981 + (TA)n Simple_repeat Simple_repeat 2 166 0 1765 140 4 29 chr4 42660291 42660569 -159667778 - AluSx SINE Alu -1 311 41 197 264 52 132 chr4 42660978 42661152 -159667195 - MIR3 SINE MIR -25 183 24 1853 153 72 3 chr4 42662301 42662622 -159665725 + MER7A DNA MER2_type 6 346 0 1515 236 58 28 chr4 42662629 42663061 -159665286 + MLT1E1 LTR MaLR 20 464 -190 713 187 59 53 chr4 42663300 42663487 -159664860 + MLT1E1 LTR MaLR 467 654 0 2323 117 0 0 chr4 42664077 42664385 -159663962 - AluSx SINE Alu -4 308 1 29 0 0 0 chr4 42665810 42665839 -159662508 + AT_rich Low_complexity Low_complexity 1 29 0 434 253 141 30 chr4 42666113 42666311 -159662036 + MIR SINE MIR 1 220 -42 398 238 0 0 chr4 42667432 42667516 -159660831 + L2 LINE L2 3227 3310 -3 204 40 0 0 chr4 42667703 42667728 -159660619 + (GGAA)n Simple_repeat Simple_repeat 2 26 0 2260 97 10 0 chr4 42667843 42668142 -159660205 - AluY SINE Alu -9 302 1 419 309 141 49 chr4 42668151 42668520 -159659827 + MLT1J LTR MaLR 109 511 0 395 270 72 99 chr4 42668532 42668795 -159659552 + MIR SINE MIR 2 257 -5 1740 175 24 17 chr4 42669728 42670025 -159658322 - AluJo SINE Alu -13 299 1 2282 103 0 0 chr4 42671321 42671621 -159656726 - AluSx SINE Alu -12 300 1 2389 84 3 0 chr4 42671949 42672247 -159656100 + AluSx SINE Alu 1 299 -13 297 255 47 38 chr4 42672308 42672414 -159655933 + L2 LINE L2 1862 1968 -1346 1719 158 0 4 chr4 42672852 42673117 -159655230 + AluJo SINE Alu 10 273 -39 2077 143 3 0 chr4 42673145 42673453 -159654894 + AluSx SINE Alu 1 309 -3 245 302 148 16 chr4 42673940 42674129 -159654218 + L2 LINE L2 2129 2342 -972 815 145 15 0 chr4 42674132 42674263 -159654084 + FLAM_C SINE Alu 1 133 -10 508 309 16 16 chr4 42674331 42674519 -159653828 + MER5A DNA MER1_type 2 189 0 202 250 62 0 chr4 42674520 42674584 -159653763 + L2 LINE L2 2398 2465 -849 200 372 0 81 chr4 42675096 42675244 -159653103 + L2 LINE L2 3040 3175 -97 180 133 44 44 chr4 42675278 42675323 -159653024 - MIR3 SINE MIR -19 189 145 209 286 57 0 chr4 42675329 42675399 -159652948 + L3 LINE CR1 1470 1543 -34 2419 79 3 0 chr4 42675780 42676072 -159652275 - AluSp SINE Alu -20 293 1 2938 10 0 0 chr4 42676078 42676389 -159651958 - AluYb8 SINE Alu -7 311 1 264 365 10 0 chr4 42676708 42676804 -159651543 + L3b LINE CR1 1402 1498 -85 2198 83 6 61 chr4 42677203 42677516 -159650831 - AluSx SINE Alu -16 296 1 211 303 26 13 chr4 42677758 42677834 -159650513 + MIR SINE MIR 21 97 -165 497 221 71 9 chr4 42678128 42678241 -159650106 + MER5B DNA MER1_type 7 126 -52 792 59 0 0 chr4 42678241 42678343 -159650004 + (CTATT)n Simple_repeat Simple_repeat 4 105 0 1218 159 20 10 chr4 42678345 42678546 -159649801 - AluJb SINE Alu -23 289 87 210 279 0 16 chr4 42678546 42678607 -159649740 + MER5B DNA MER1_type 119 178 0 290 292 80 29 chr4 42678706 42678843 -159649504 - L3 LINE CR1 -44 1533 1390 189 333 54 36 chr4 42678951 42679062 -159649285 - MIR SINE MIR -64 144 32 271 328 87 11 chr4 42679603 42679786 -159648561 + MIR SINE MIR 66 262 0 2511 64 3 0 chr4 42680439 42680736 -159647611 - AluSp SINE Alu -15 298 1 3524 113 25 25 chr4 42680777 42681301 -159647046 + MER1A DNA MER1_type 4 527 0 2173 196 33 25 chr4 42681309 42681793 -159646554 + MLT1D LTR MaLR 16 503 -2 2224 122 6 3 chr4 42681948 42682259 -159646088 + AluSx SINE Alu 1 312 0 267 229 0 0 chr4 42682522 42682570 -159645777 + MER3 DNA MER1_type 1 48 -161 6932 194 17 9 chr4 42682570 42684053 -159644294 + L1P4 LINE L1 3961 5455 -710 353 245 368 0 chr4 42684121 42684284 -159644063 - MIR SINE MIR -3 259 37 292 315 27 45 chr4 42684906 42685017 -159643330 + L2 LINE L2 3197 3305 -8 858 205 17 60 chr4 42685478 42685712 -159642635 + MER58A DNA MER1_type 1 224 0 42 71 0 0 chr4 42686913 42686997 -159641350 + AT_rich Low_complexity Low_complexity 1 84 0 2014 150 23 7 chr4 42687035 42687342 -159641005 + AluSx SINE Alu 1 312 0 763 149 66 0 chr4 42690902 42691023 -159637324 - FLAM_A SINE Alu -3 130 2 194 0 39 0 chr4 42691197 42691223 -159637124 + (TAA)n Simple_repeat Simple_repeat 1 27 0 2523 7 0 0 chr4 42691351 42691625 -159636722 - AluY SINE Alu 0 311 38 30 27 0 0 chr4 42691846 42691883 -159636464 + AT_rich Low_complexity Low_complexity 1 37 0 184 280 140 10 chr4 42692488 42692588 -159635759 - L2 LINE L2 -49 3264 3152 2039 95 0 101 chr4 42692907 42693049 -159635298 + AluY SINE Alu 1 91 -220 2017 139 36 0 chr4 42693049 42693350 -159634997 + AluSx SINE Alu 1 312 0 2039 95 0 101 chr4 42693350 42693543 -159634804 + AluY SINE Alu 91 302 -9 2116 148 0 0 chr4 42694145 42694450 -159633897 - AluSx SINE Alu -7 305 1 573 129 0 32 chr4 42694738 42694831 -159633516 - FLAM_A SINE Alu -20 122 33 613 244 22 62 chr4 42694891 42695116 -159633231 + L2 LINE L2 3097 3312 -1 2203 110 10 0 chr4 42695728 42696029 -159632318 - AluSx SINE Alu -8 304 1 1412 211 73 76 chr4 42696216 42696268 -159632079 - L1ME2 LINE L1 -1 6161 6110 2649 90 21 3 chr4 42696268 42696647 -159631700 - L1PA13 LINE L1 -11 6152 5767 1412 211 73 76 chr4 42696647 42696761 -159631586 - L1ME2 LINE L1 -52 6110 5997 1987 127 3 0 chr4 42696761 42697072 -159631275 + AluSx SINE Alu 1 312 0 1412 211 73 76 chr4 42697072 42697213 -159631134 - L1ME2 LINE L1 -165 5997 5857 2080 118 3 37 chr4 42697213 42697535 -159630812 - AluSx SINE Alu -1 311 1 1412 211 73 76 chr4 42697535 42697782 -159630565 - L1ME2 LINE L1 -305 5857 5615 1212 215 120 9 chr4 42697782 42698107 -159630240 - MLT1A1 LTR MaLR 0 365 5 1412 211 73 76 chr4 42698107 42698188 -159630159 - L1ME2 LINE L1 -547 5615 5535 851 297 53 18 chr4 42698807 42699201 -159629146 + L1ME2 LINE L1 502 909 -5296 3759 155 33 102 chr4 42699252 42699673 -159628674 + L1MA6 LINE L1 4941 5390 -910 1754 175 33 7 chr4 42699673 42699976 -159628371 - AluJo SINE Alu -1 311 1 3759 155 33 102 chr4 42699976 42700249 -159628098 + L1MA6 LINE L1 5390 5680 -620 2286 99 7 0 chr4 42700249 42700543 -159627804 + AluSc SINE Alu 1 296 -13 3759 155 33 102 chr4 42700543 42700566 -159627781 + L1MA6 LINE L1 5680 5703 -597 735 172 0 16 chr4 42700566 42700688 -159627659 + FLAM_A SINE Alu 5 124 -9 3759 155 33 102 chr4 42700688 42701418 -159626929 + L1MA6 LINE L1 5703 6292 -8 666 231 168 25 chr4 42701692 42702008 -159626339 + L1ME2 LINE L1 983 1343 -4862 2518 85 0 0 chr4 42702048 42702354 -159625993 - AluSx SINE Alu -6 306 1 261 281 12 0 chr4 42702432 42702514 -159625833 + HAL1 LINE L1 1506 1588 -919 917 264 133 42 chr4 42702890 42703614 -159624733 + L1ME2 LINE L1 2037 2694 -3521 2388 85 0 16 chr4 42703614 42703930 -159624417 + AluY SINE Alu 1 311 0 2414 104 28 3 chr4 42703939 42704294 -159624053 + THE1B LTR MaLR 1 364 0 917 264 133 42 chr4 42704294 42704693 -159623654 + L1ME2 LINE L1 2701 3062 -3153 2120 129 7 3 chr4 42704693 42705002 -159623345 - AluSg SINE Alu 0 310 1 917 264 133 42 chr4 42705002 42705063 -159623284 + L1ME2 LINE L1 3062 3116 -3099 1879 130 84 35 chr4 42705063 42705410 -159622937 - THE1B LTR MaLR 0 364 1 1802 212 75 37 chr4 42705411 42705892 -159622455 - MLT1D LTR MaLR -4 501 3 917 264 133 42 chr4 42705892 42706030 -159622317 + L1ME2 LINE L1 3115 3451 -2764 22 70 0 0 chr4 42706259 42706302 -159622045 + AT_rich Low_complexity Low_complexity 1 43 0 2191 121 3 0 chr4 42706320 42706618 -159621729 - AluSx SINE Alu -13 299 1 983 203 14 9 chr4 42706975 42707192 -159621155 + MER58B DNA MER1_type 120 337 -4 2074 82 7 11 chr4 42707395 42707705 -159620642 + AluSc SINE Alu 1 309 0 1852 165 0 28 chr4 42707740 42708061 -159620286 - AluJb SINE Alu 0 312 1 2209 109 6 3 chr4 42708108 42708419 -159619928 - AluSx SINE Alu 0 312 1 1143 60 0 0 chr4 42708420 42708554 -159619793 - AluSq/x SINE Alu -179 134 1 9884 188 37 10 chr4 42708908 42709278 -159619069 - L1PA16 LINE L1 -20 6146 5787 2214 121 0 0 chr4 42709278 42709576 -159618771 - AluSg1 SINE Alu -3 306 9 9884 188 37 10 chr4 42709576 42712450 -159615897 - L1PA16 LINE L1 -379 5787 2821 1865 285 82 32 chr4 42712450 42713321 -159615026 + L1ME2 LINE L1 3696 4522 -1693 1974 119 16 39 chr4 42713321 42713684 -159614663 + AluSc SINE Alu 1 309 0 1865 285 82 32 chr4 42713684 42714116 -159614231 + L1ME2 LINE L1 4522 5090 -1125 1712 170 11 0 chr4 42714116 42714291 -159614056 - AluJb SINE Alu 0 309 128 249 33 0 0 chr4 42714291 42714321 -159614026 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1712 170 11 0 chr4 42714321 42714449 -159613898 - AluJb SINE Alu -181 128 3 1865 285 82 32 chr4 42714449 42714667 -159613680 + L1ME2 LINE L1 5090 5296 -919 427 303 165 42 chr4 42714793 42715199 -159613148 + L2 LINE L2 2804 3259 -54 214 304 54 11 chr4 42716129 42716221 -159612126 - MER5A DNA MER1_type -26 163 68 881 113 0 15 chr4 42716382 42716515 -159611832 + AluY SINE Alu 1 131 -180 1496 96 5 10 chr4 42716674 42716882 -159611465 - AluSx SINE Alu -18 292 86 1134 210 56 0 chr4 42717057 42717362 -159610985 - MER33 DNA MER1_type 0 324 3 731 152 8 0 chr4 42718089 42718214 -159610133 - AluSg/x SINE Alu -4 305 180 1086 209 35 26 chr4 42718427 42719046 -159609301 + L1ME2 LINE L1 5395 6116 -117 535 146 0 0 chr4 42719057 42719139 -159609208 - AluSx SINE Alu -227 85 4 305 147 15 0 chr4 42719141 42719209 -159609138 + L1MA10 LINE L1 6264 6332 -2 209 338 39 0 chr4 42719289 42719366 -159608981 + MIR3 SINE MIR 4 83 -125 26 0 0 27 chr4 42719629 42719648 -159608699 + AT_rich Low_complexity Low_complexity 1 20 -16 704 162 0 63 chr4 42719648 42719790 -159608557 + AluJo SINE Alu 1 133 -169 26 0 0 27 chr4 42719790 42719807 -159608540 + AT_rich Low_complexity Low_complexity 20 36 0 207 0 0 0 chr4 42719818 42719841 -159608506 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1504 107 0 0 chr4 42719863 42720059 -159608288 + AluSg1 SINE Alu 1 196 -113 225 0 0 0 chr4 42720086 42720111 -159608236 + (A)n Simple_repeat Simple_repeat 1 25 0 222 171 0 0 chr4 42720129 42720170 -159608177 + A-rich Low_complexity Low_complexity 1 41 0 968 187 24 0 chr4 42720176 42720342 -159608005 + AluJo SINE Alu 120 289 -23 1750 150 13 19 chr4 42720420 42720734 -159607613 - AluJo SINE Alu 0 312 1 28131 35 5 3 chr4 42720983 42725402 -159602945 + L1PA4 LINE L1 1730 6151 -4 30 0 0 0 chr4 42725402 42725432 -159602915 + AT_rich Low_complexity Low_complexity 1 30 0 2285 122 3 0 chr4 42726053 42726365 -159601982 + AluSq SINE Alu 1 313 0 2348 97 0 0 chr4 42726994 42727294 -159601053 + AluY SINE Alu 1 300 -11 706 148 19 143 chr4 42728290 42728500 -159599847 + FAM SINE Alu 1 49 0 936 177 13 6 chr4 42728612 42728770 -159599577 - AluJb SINE Alu -18 294 136 2308 108 0 3 chr4 42728772 42729079 -159599268 - AluSx SINE Alu -6 306 1 437 293 30 15 chr4 42729888 42730021 -159598326 - MLT1K LTR MaLR -91 497 363 181 196 0 78 chr4 42730025 42730076 -159598271 + L3 LINE CR1 314 360 -1217 325 173 123 49 chr4 42730313 42730394 -159597953 + MIR SINE MIR 65 151 -111 1010 247 43 79 chr4 42732118 42732314 -159596033 - LTR16B LTR ERVL -8 456 254 230 0 33 0 chr4 42732314 42732344 -159596003 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1932 103 33 0 chr4 42732346 42732617 -159595730 - AluSq SINE Alu -33 280 1 1010 247 43 79 chr4 42732617 42732886 -159595461 - LTR16B LTR ERVL -211 253 5 2368 98 7 0 chr4 42733007 42733313 -159595034 - AluSg SINE Alu -2 308 1 435 269 28 46 chr4 42733464 42733592 -159594755 - L1MC4 LINE L1 -1040 7002 6878 868 203 39 0 chr4 42733592 42733774 -159594573 - MER5A DNA MER1_type 0 189 1 435 269 28 46 chr4 42733774 42733861 -159594486 - L1MC4 LINE L1 -1164 6878 6791 2271 99 0 3 chr4 42734953 42735255 -159593092 + AluSg SINE Alu 8 308 -2 2051 263 132 6 chr4 42736062 42736766 -159591581 + L2 LINE L2 2153 2945 -369 263 343 50 30 chr4 42736758 42736857 -159591490 - L2 LINE L2 -4 3268 3168 * 733 244 83 65 chr4 42736887 42737007 -159591340 - MIR SINE MIR -21 241 125 2149 123 16 7 chr4 42737007 42737316 -159591031 + AluSx SINE Alu 1 312 0 733 244 83 65 chr4 42737316 42737425 -159590922 - MIR SINE MIR -137 125 8 1863 159 3 17 chr4 42737702 42738003 -159590344 - AluJb SINE Alu -15 297 1 2395 58 0 10 chr4 42738138 42738431 -159589916 + AluY SINE Alu 1 290 -21 1845 162 3 7 chr4 42738445 42738579 -159589768 + AluJb SINE Alu 1 134 -178 2329 100 7 0 chr4 42738579 42738879 -159589468 + AluSx SINE Alu 1 302 -10 1845 162 3 7 chr4 42738879 42739041 -159589306 + AluJb SINE Alu 134 296 -16 186 353 0 0 chr4 42740050 42740101 -159588246 - L2 LINE L2 -17 3255 3205 1750 229 91 47 chr4 42740121 42740680 -159587667 - MLT1E LTR MaLR 0 593 10 573 284 62 46 chr4 42741000 42741306 -159587041 - MLT1J LTR MaLR -130 381 71 494 316 31 31 chr4 42741513 42741706 -159586641 - MER117 DNA MER1_type -3 194 2 854 248 81 22 chr4 42741800 42742174 -159586173 - L1MEd LINE L1 -4814 1315 935 1260 227 106 12 chr4 42742221 42742551 -159585796 + L1MC/D LINE L1 5328 5688 -2120 27 0 0 0 chr4 42742621 42742648 -159585699 + AT_rich Low_complexity Low_complexity 1 27 0 683 307 89 22 chr4 42742658 42742928 -159585419 - L1MEd LINE L1 -5348 771 484 936 126 86 7 chr4 42742971 42743122 -159585225 - FRAM SINE Alu 0 166 4 505 310 39 0 chr4 42743219 42743422 -159584925 - L1MEd LINE L1 -5903 216 6 25 31 0 0 chr4 42743864 42743896 -159584451 + AT_rich Low_complexity Low_complexity 1 32 0 2369 92 3 0 chr4 42743940 42744246 -159584101 - AluSp SINE Alu -6 307 1 272 286 41 35 chr4 42744258 42744429 -159583918 + MER104 DNA Tc2 6 177 -3 198 250 0 0 chr4 42745282 42745322 -159583025 + L2 LINE L2 3255 3294 -19 366 339 76 35 chr4 42745783 42746099 -159582248 + L1MD2 LINE L1 1 329 -6211 3636 237 144 11 chr4 42746648 42748165 -159580182 + L1MD2 LINE L1 917 2615 -3925 2341 94 13 0 chr4 42748165 42748464 -159579883 - AluSx SINE Alu -9 303 1 3636 237 144 11 chr4 42748464 42748584 -159579763 + L1MD2 LINE L1 2615 2718 -3822 1109 145 5 16 chr4 42748623 42748809 -159579538 - MER2 DNA MER2_type -161 184 1 4373 231 57 21 chr4 42748809 42749375 -159578972 + L1MD2 LINE L1 2958 3503 -3037 1648 97 5 0 chr4 42749375 42749591 -159578756 + AluSg/x SINE Alu 82 298 -12 4373 231 57 21 chr4 42749591 42750260 -159578087 + L1MD2 LINE L1 3503 4250 -2290 1716 167 31 10 chr4 42750260 42750554 -159577793 + AluJo SINE Alu 2 301 -11 4373 231 57 21 chr4 42750554 42750711 -159577636 + L1MD2 LINE L1 4250 4400 -2140 1033 160 151 10 chr4 42750716 42750922 -159577425 + AluSg SINE Alu 1 235 -75 1059 108 0 0 chr4 42750926 42751065 -159577282 + AluJb SINE Alu 157 295 -17 3096 279 68 67 chr4 42751065 42751747 -159576600 + L1MD2 LINE L1 4399 5084 -1456 525 55 0 0 chr4 42751747 42751820 -159576527 + (GA)n Simple_repeat Simple_repeat 2 74 0 3096 279 68 67 chr4 42751820 42752334 -159576013 + L1MD2 LINE L1 5084 5596 -944 754 154 0 0 chr4 42752335 42752452 -159575895 + AluSq/x SINE Alu 1 117 -195 470 218 18 0 chr4 42752468 42752578 -159575769 + L1MD2 LINE L1 5579 5690 -850 340 257 66 37 chr4 42752578 42752714 -159575633 - L1MEc LINE L1 -4466 1930 1791 5412 163 52 21 chr4 42752719 42753756 -159574591 + L1MD2 LINE L1 5677 6745 -8 2322 100 0 0 chr4 42754599 42754898 -159573449 - AluSx SINE Alu -13 299 1 231 180 0 0 chr4 42755140 42755190 -159573157 - Alu SINE Alu 0 302 253 * 1767 148 0 0 chr4 42755189 42755453 -159572894 + Tigger3(Golem) DNA MER2_type 2765 3028 -1 23 33 0 0 chr4 42755853 42755883 -159572464 + AT_rich Low_complexity Low_complexity 1 30 0 500 274 86 86 chr4 42756238 42756493 -159571854 + MIR SINE MIR 2 256 -6 22 99 0 0 chr4 42756783 42756854 -159571493 + AT_rich Low_complexity Low_complexity 1 71 0 2025 179 65 4 chr4 42758071 42758529 -159569818 - L1M4 LINE L1 -789 5357 4872 1395 133 61 14 chr4 42758561 42758989 -159569358 - L1MD1 LINE L1 -2 6240 5737 769 155 46 11 chr4 42758989 42759149 -159569198 + L1MB8 LINE L1 5998 6177 -1 2261 90 0 40 chr4 42759175 42759498 -159568849 - AluSg SINE Alu 0 310 1 1316 225 111 20 chr4 42759525 42760022 -159568325 - L1M4 LINE L1 -1286 4860 4319 21 36 0 0 chr4 42760044 42760072 -159568275 + AT_rich Low_complexity Low_complexity 1 28 0 2181 102 0 52 chr4 42760228 42760552 -159567795 - AluSg SINE Alu -3 307 1 418 133 0 24 chr4 42761652 42761735 -159566612 + (TTTCC)n Simple_repeat Simple_repeat 4 84 0 462 266 8 31 chr4 42762197 42762325 -159566022 + MIR SINE MIR 121 245 -17 1043 169 48 11 chr4 42762392 42762581 -159565766 + MIR SINE MIR 2 197 -65 547 131 25 16 chr4 42762601 42762723 -159565624 - MER33 DNA MER1_type -1 323 201 1104 92 20 0 chr4 42762723 42762876 -159565471 - L1P4 LINE L1 -574 5594 5439 740 125 86 7 chr4 42762876 42763028 -159565319 - MER33 DNA MER1_type -135 189 26 958 170 35 0 chr4 42763245 42763416 -159564931 - MER2 DNA MER2_type 0 345 169 2860 116 29 26 chr4 42763738 42764228 -159564119 - L1PB4 LINE L1 0 6156 5666 321 302 133 43 chr4 42764494 42764795 -159563552 + L2 LINE L2 2043 2370 -944 216 322 70 61 chr4 42764854 42765335 -159563012 + L2 LINE L2 2549 3096 -176 509 277 60 0 chr4 42765386 42765552 -159562795 + MIR SINE MIR 70 245 -17 285 331 153 37 chr4 42765546 42765709 -159562638 + L2 LINE L2 3091 3272 0 * 195 222 0 0 chr4 42765709 42765754 -159562593 + (TGGA)n Simple_repeat Simple_repeat 2 46 0 947 193 13 75 chr4 42765820 42765962 -159562385 - MER58A DNA MER1_type -2196 224 101 2209 98 0 16 chr4 42765962 42766269 -159562078 + AluY SINE Alu 1 302 -9 947 193 13 75 chr4 42766269 42766365 -159561982 - MER58A DNA MER1_type -2319 101 1 1673 142 0 15 chr4 42767274 42767534 -159560813 + AluSx SINE Alu 1 256 -56 883 110 0 0 chr4 42767537 42767655 -159560692 + AluSg/x SINE Alu 187 304 -8 712 200 14 0 chr4 42767935 42768075 -159560272 - MIR SINE MIR -7 255 114 654 274 112 19 chr4 42768231 42768446 -159559901 + MIR SINE MIR 2 236 -26 603 257 73 30 chr4 42768847 42769065 -159559282 + MIR SINE MIR 37 262 0 27 62 0 0 chr4 42769285 42769333 -159559014 + AT_rich Low_complexity Low_complexity 1 48 0 872 166 0 20 chr4 42769349 42769500 -159558847 - MER106B DNA MER1_type -910 149 2 1733 145 20 44 chr4 42770016 42770313 -159558034 - AluJo SINE Alu -22 290 1 662 242 50 6 chr4 42770336 42770497 -159557850 - HsTC2 DNA Tc2 -1012 886 719 5184 112 66 2 chr4 42770504 42771160 -159557187 + L1PB4 LINE L1 5126 5864 -292 237 33 0 0 chr4 42771160 42771190 -159557157 + (CA)n Simple_repeat Simple_repeat 2 31 0 5184 112 66 2 chr4 42771190 42771491 -159556856 + L1PB4 LINE L1 5864 6144 -12 410 309 48 19 chr4 42771518 42771725 -159556622 - HsTC2 DNA Tc2 -1171 727 515 1598 192 0 24 chr4 42772162 42772459 -159555888 + AluJo SINE Alu 3 292 -20 244 179 13 64 chr4 42773587 42773665 -159554682 - MIR SINE MIR -123 139 66 2240 92 0 3 chr4 42773855 42774159 -159554188 - AluSg SINE Alu 0 303 1 1080 77 7 0 chr4 42774424 42774567 -159553780 + L1PA10 LINE L1 6019 6162 -6 1984 138 3 16 chr4 42774783 42775087 -159553260 + AluJb SINE Alu 9 308 -4 33 25 0 0 chr4 42775101 42775141 -159553206 + AT_rich Low_complexity Low_complexity 1 40 0 2179 112 0 20 chr4 42775554 42775857 -159552490 + AluSg SINE Alu 1 297 -13 1547 129 4 4 chr4 42776170 42776395 -159551952 + AluSg/x SINE Alu 75 299 -13 2061 125 26 0 chr4 42776405 42776710 -159551637 + AluSq SINE Alu 1 313 0 1195 149 9 167 chr4 42776958 42777306 -159551041 - AluJo SINE Alu -9 293 1 265 203 39 12 chr4 42777314 42777423 -159550924 - L1MC/D LINE L1 -303 5818 5704 669 154 12 118 chr4 42777424 42777547 -159550800 + AluJo SINE Alu 1 103 -209 1966 144 7 7 chr4 42777547 42777852 -159550495 - AluSx SINE Alu -7 305 1 669 154 12 118 chr4 42777852 42777897 -159550450 + AluJo SINE Alu 103 151 -161 326 155 0 52 chr4 42777897 42777955 -159550392 + Alu SINE Alu 235 289 -13 37 39 0 0 chr4 42777962 42778013 -159550334 + AT_rich Low_complexity Low_complexity 1 51 0 425 284 84 55 chr4 42778097 42778407 -159549940 - L1MC/D LINE L1 -2199 5609 5291 904 173 130 0 chr4 42778440 42778625 -159549722 - MER3 DNA MER1_type 0 209 1 21 36 0 0 chr4 42778836 42778864 -159549483 + AT_rich Low_complexity Low_complexity 1 28 0 2133 95 19 35 chr4 42779810 42780125 -159548222 - AluSx SINE Alu -2 310 1 234 236 24 79 chr4 42780839 42781004 -159547343 + L1M LINE L1 5255 5410 -2398 830 164 0 0 chr4 42781108 42781242 -159547105 + AluJo SINE Alu 1 134 -178 19307 51 2 1 chr4 42781252 42783642 -159544705 + L1P LINE L1 1 2391 -3755 2308 104 0 3 chr4 42783760 42784059 -159544288 + AluSx SINE Alu 2 299 -13 1390 149 65 7 chr4 42784884 42785159 -159543188 - L1MB4 LINE L1 0 6180 5890 472 221 98 8 chr4 42786680 42786802 -159541545 - Charlie8 DNA MER1_type -2141 276 144 240 348 22 44 chr4 42787335 42787470 -159540877 + L2 LINE L2 3141 3272 0 576 298 34 10 chr4 42787874 42788082 -159540265 - L1MC5 LINE L1 -47 7914 7702 2229 222 27 35 chr4 42788089 42788421 -159539926 - L1ME3 LINE L1 -2 6160 5832 2289 85 10 0 chr4 42788421 42788714 -159539633 - AluSq SINE Alu -17 296 1 2229 222 27 35 chr4 42788714 42788930 -159539417 - L1ME3 LINE L1 -330 5832 5616 1570 216 69 44 chr4 42788930 42789104 -159539243 - L1MC/D LINE L1 -878 5268 5100 1864 122 0 0 chr4 42789104 42789358 -159538989 + AluSq SINE Alu 56 309 -4 1570 216 69 44 chr4 42789358 42789687 -159538660 - L1MC/D LINE L1 -1046 5100 4752 2412 156 71 4 chr4 42789705 42790155 -159538192 - L1MB7 LINE L1 -220 5964 5485 462 259 25 25 chr4 42790131 42790289 -159538058 - L1MC5 LINE L1 -302 7659 7502 * 183 80 0 0 chr4 42790306 42790331 -159538016 + (TC)n Simple_repeat Simple_repeat 2 26 0 549 222 151 16 chr4 42790376 42790561 -159537786 - L1MC5 LINE L1 -492 7469 7260 2260 118 0 10 chr4 42790590 42790903 -159537444 - AluSx SINE Alu -2 310 1 1031 191 206 65 chr4 42790914 42791239 -159537108 - MLT1A2 LTR MaLR 0 374 4 1617 105 56 49 chr4 42791288 42791554 -159536793 - AluSq SINE Alu -45 268 1 234 276 0 0 chr4 42791628 42791686 -159536661 - L1MC4 LINE L1 -787 7255 7198 433 41 0 0 chr4 42791687 42791736 -159536611 + MER30 DNA MER1_type 3 51 -179 250 292 11 22 chr4 42791786 42791875 -159536472 - MLT1K LTR MaLR -362 226 139 483 276 64 13 chr4 42792298 42792454 -159535893 - MIR3 SINE MIR -3 205 42 1667 144 59 0 chr4 42792533 42792803 -159535544 - AluJo SINE Alu -26 286 1 218 154 103 0 chr4 42793063 42793102 -159535245 + L2 LINE L2 3222 3264 -8 307 335 74 4 chr4 42793477 42793734 -159534613 + L2 LINE L2 1830 2104 -1210 2422 81 3 0 chr4 42793906 42794203 -159534144 + AluSp SINE Alu 1 298 -15 381 211 0 0 chr4 42794267 42794343 -159534004 - MER53 DNA DNA -113 76 1 613 276 133 0 chr4 42794352 42794548 -159533799 - MIR SINE MIR -39 223 2 2198 118 0 3 chr4 42795185 42795482 -159532865 - AluSx SINE Alu -16 296 1 202 333 42 0 chr4 42795486 42795558 -159532789 + L2 LINE L2 2226 2300 -1014 2425 93 0 0 chr4 42795755 42796056 -159532291 + AluSc SINE Alu 1 301 -8 1727 103 22 0 chr4 42796539 42796762 -159531585 + MER30 DNA MER1_type 1 228 -2 2285 109 3 0 chr4 42797066 42797370 -159530977 + AluSx SINE Alu 1 305 -7 420 266 18 9 chr4 42797557 42797670 -159530677 - MIR3 SINE MIR -13 195 82 589 215 21 14 chr4 42797961 42798105 -159530242 + MIR SINE MIR 108 252 -10 284 304 72 24 chr4 42798952 42799077 -159529270 - L2 LINE L2 -5 3267 3137 187 320 112 50 chr4 42799388 42799825 -159528522 - L2 LINE L2 -454 2860 2397 1115 171 180 13 chr4 42799828 42800067 -159528280 + AluSg1 SINE Alu 1 279 -30 251 235 25 49 chr4 42800451 42800532 -159527815 + L1MC4a LINE L1 5848 5926 -1882 2191 114 3 7 chr4 42800643 42800941 -159527406 - AluSx SINE Alu -15 297 1 2298 96 0 7 chr4 42801159 42801460 -159526887 - AluSx SINE Alu -13 299 1 944 163 6 12 chr4 42801674 42801840 -159526507 + AluJo SINE Alu 126 290 -22 1028 219 40 0 chr4 42802059 42802260 -159526087 + MER3 DNA MER1_type 1 209 0 2161 198 59 28 chr4 42803453 42803998 -159524349 - MER68 LTR ERV1 0 562 1 1723 191 60 0 chr4 42804167 42804486 -159523861 - MER58B DNA MER1_type 0 341 4 448 235 56 29 chr4 42804527 42804728 -159523619 + L1ME LINE L1 5490 5694 -427 2317 117 0 0 chr4 42805320 42805619 -159522728 + AluSx SINE Alu 1 299 -13 593 280 96 8 chr4 42805627 42805888 -159522459 - MLT1J LTR MaLR -2 509 226 994 182 88 0 chr4 42806717 42806909 -159521438 - MER3 DNA MER1_type 0 209 1 2035 135 7 0 chr4 42808033 42808329 -159520018 + AluSx SINE Alu 1 298 -14 520 240 39 13 chr4 42809339 42809493 -159518854 - MLT1J LTR MaLR -315 196 39 276 309 73 6 chr4 42809502 42809667 -159518680 + L2 LINE L2 2316 2491 -823 373 226 0 29 chr4 42809852 42809954 -159518393 - L1P5 LINE L1 -571 5585 5487 2179 116 7 3 chr4 42809961 42810263 -159518084 - AluSx SINE Alu -9 303 1 787 193 25 54 chr4 42810263 42810387 -159517960 - L1M4 LINE L1 -835 5311 5196 943 148 0 15 chr4 42810387 42810522 -159517825 - FLAM_C SINE Alu 0 133 1 787 193 25 54 chr4 42810522 42810636 -159517711 - L1M4 LINE L1 -950 5196 5080 1658 176 15 0 chr4 42810637 42810899 -159517448 + AluJb SINE Alu 1 266 -46 850 136 25 0 chr4 42810940 42811058 -159517289 + FLAM_A SINE Alu 5 125 -8 901 201 46 0 chr4 42811061 42811255 -159517092 - L1M4 LINE L1 -1063 5083 4881 584 178 109 25 chr4 42811256 42811458 -159516889 - L1M4 LINE L1 -831 5315 5097 237 132 0 0 chr4 42811459 42811497 -159516850 + (TA)n Simple_repeat Simple_repeat 2 39 0 249 33 0 0 chr4 42811497 42811527 -159516820 + (GA)n Simple_repeat Simple_repeat 2 31 0 1426 210 95 9 chr4 42811746 42812093 -159516254 - MLT1E1 LTR MaLR -277 377 1 2294 212 139 31 chr4 42812102 42812223 -159516124 - L1M4 LINE L1 -1559 4587 4480 2325 97 3 0 chr4 42812223 42812521 -159515826 - AluSq SINE Alu -14 299 1 2294 212 139 31 chr4 42812521 42813242 -159515105 - L1M4 LINE L1 -1666 4480 3654 327 280 40 0 chr4 42813231 42813381 -159514966 - L1MDa LINE L1 -4147 2416 2261 * 809 235 176 20 chr4 42813443 42814139 -159514208 - L1MDa LINE L1 -4482 2081 1178 1972 155 0 10 chr4 42814155 42814465 -159513882 - AluJo SINE Alu -5 307 1 198 0 0 0 chr4 42814469 42814491 -159513856 + (A)n Simple_repeat Simple_repeat 1 22 0 914 217 6 17 chr4 42814727 42814902 -159513445 + FAM SINE Alu 1 173 -2 785 113 19 0 chr4 42820103 42820209 -159508138 + AluSg/x SINE Alu 186 293 -17 2230 102 7 0 chr4 42820356 42820651 -159507696 + AluSx SINE Alu 1 297 -15 2027 102 11 21 chr4 42822439 42822768 -159505579 - AluSq SINE Alu 0 326 1 633 185 196 0 chr4 42823730 42823903 -159504444 - MLT1D LTR MaLR -186 319 113 471 113 0 38 chr4 42823925 42824005 -159504342 + MLT1D LTR MaLR 429 505 0 2144 117 13 3 chr4 42824214 42824523 -159503824 + AluSx SINE Alu 1 312 0 1909 156 7 3 chr4 42824544 42824846 -159503501 + AluSx SINE Alu 1 303 -9 298 359 0 0 chr4 42825259 42825365 -159502982 - MIR SINE MIR -69 139 34 8459 12 0 0 chr4 42826073 42827426 -159500921 - L1PA2 LINE L1 0 6155 4803 1041 9 0 0 chr4 42827426 42827533 -159500814 - U6 snRNA snRNA 0 107 1 417 311 107 4 chr4 42827545 42827770 -159500577 - L1ME4a LINE L1 -197 5924 5677 1871 156 23 0 chr4 42827854 42828155 -159500192 + AluJb SINE Alu 1 308 -4 820 79 0 0 chr4 42828658 42828759 -159499588 + AluY SINE Alu 1 101 -210 3493 94 0 6 chr4 42828771 42829238 -159499109 + MER9 LTR ERVK 40 503 -8 1524 116 9 0 chr4 42829238 42829462 -159498885 + AluY SINE Alu 86 311 0 1081 126 0 0 chr4 42829586 42829768 -159498579 + AluSg/x SINE Alu 133 314 0 4948 123 41 39 chr4 42830252 42830633 -159497714 + L1MC1 LINE L1 5450 5829 -504 2069 123 16 7 chr4 42830633 42830942 -159497405 + AluSx SINE Alu 1 312 0 4948 123 41 39 chr4 42830942 42831398 -159496949 + L1MC1 LINE L1 5829 6288 -45 326 100 0 20 chr4 42831420 42831470 -159496877 - AluSq/x SINE Alu -198 105 57 809 161 8 0 chr4 42831487 42831611 -159496736 + FLAM_C SINE Alu 2 126 -17 21 0 0 0 chr4 42832718 42832739 -159495608 + AT_rich Low_complexity Low_complexity 1 21 0 2392 85 7 0 chr4 42833281 42833575 -159494772 - AluSq SINE Alu -17 296 1 545 266 102 51 chr4 42833577 42833931 -159494416 - L1MC4a LINE L1 -1926 5882 5511 214 270 34 56 chr4 42834499 42834588 -159493759 + L2 LINE L2 3185 3271 -1 1936 156 0 7 chr4 42835145 42835446 -159492901 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr4 42835719 42835742 -159492605 + AT_rich Low_complexity Low_complexity 1 23 0 421 219 39 101 chr4 42836801 42836979 -159491368 + MIR SINE MIR 24 190 -72 2019 129 0 4 chr4 42837256 42837566 -159490781 + AluSg SINE Alu 1 309 0 23 0 0 0 chr4 42837675 42837698 -159490649 + AT_rich Low_complexity Low_complexity 1 23 0 484 313 51 63 chr4 42838022 42838373 -159489974 + L2 LINE L2 2926 3272 0 2221 166 58 7 chr4 42839188 42839651 -159488696 + L1MB7 LINE L1 5677 6163 -21 1899 195 67 50 chr4 42839682 42840246 -159488101 + L1MC4a LINE L1 7138 7711 -97 2080 132 3 7 chr4 42840681 42840976 -159487371 + AluSx SINE Alu 1 294 -18 252 167 37 0 chr4 42841823 42841877 -159486470 + MLT1J LTR MaLR 111 166 -345 289 246 329 6 chr4 42841957 42842124 -159486223 + MLT1L LTR MaLR 306 526 -89 557 306 68 42 chr4 42844174 42844481 -159483866 + L2 LINE L2 158 472 -2842 1770 292 126 47 chr4 42844641 42845772 -159482575 + L2 LINE L2 1553 2852 -461 2249 93 3 3 chr4 42845772 42846073 -159482274 + AluSp SINE Alu 1 301 -12 1770 292 126 47 chr4 42846073 42846516 -159481831 + L2 LINE L2 2852 3259 -54 214 304 54 11 chr4 42847445 42847537 -159480810 - MER5A DNA MER1_type -26 163 68 2342 68 0 3 chr4 42847698 42847992 -159480355 + AluY SINE Alu 1 293 -18 264 372 0 0 chr4 42848087 42848165 -159480182 - MER5A DNA MER1_type 0 189 112 490 243 292 0 chr4 42848947 42849149 -159479198 - MIR SINE MIR 0 262 2 785 240 64 0 chr4 42849152 42849356 -159478991 + MIR SINE MIR 40 256 -6 554 134 0 80 chr4 42849492 42849604 -159478743 - Tigger7 DNA MER2_type 0 2487 2385 * 1473 194 4 8 chr4 42849599 42849867 -159478480 - Tigger7 DNA MER2_type -2220 267 1 2459 85 3 0 chr4 42849891 42850198 -159478149 + AluSp SINE Alu 1 308 -5 40 0 0 0 chr4 42851920 42851960 -159476387 + AT_rich Low_complexity Low_complexity 1 40 0 1516 179 12 8 chr4 42851990 42852247 -159476100 + AluJb SINE Alu 44 301 -11 941 191 0 0 chr4 42852457 42852619 -159475728 + FRAM SINE Alu 2 163 -3 1759 167 43 3 chr4 42852625 42852925 -159475422 + AluJb SINE Alu 1 312 0 23 0 0 0 chr4 42853034 42853057 -159475290 + AT_rich Low_complexity Low_complexity 1 23 0 232 363 0 12 chr4 42854452 42854532 -159473815 - L2 LINE L2 -16 3256 3178 2145 262 85 33 chr4 42854750 42855224 -159473123 + L2 LINE L2 1964 2412 -902 1966 149 0 0 chr4 42855224 42855506 -159472841 - AluJb SINE Alu -30 282 1 2145 262 85 33 chr4 42855506 42855767 -159472580 + L2 LINE L2 2412 2745 -569 1776 127 91 4 chr4 42855767 42856042 -159472305 + AluSg SINE Alu 1 299 -11 2145 262 85 33 chr4 42856042 42856092 -159472255 + L2 LINE L2 2745 2791 -523 22 0 0 0 chr4 42857231 42857253 -159471094 + AT_rich Low_complexity Low_complexity 1 22 0 1784 164 24 14 chr4 42857673 42857966 -159470381 + AluJb SINE Alu 1 296 -16 1115 262 196 12 chr4 42858089 42858771 -159469576 - L2 LINE L2 -13 3300 2502 234 0 0 0 chr4 42858951 42858977 -159469370 + (A)n Simple_repeat Simple_repeat 1 26 0 1500 143 23 53 chr4 42859043 42859179 -159469168 + AluJo SINE Alu 1 127 -185 1527 116 112 0 chr4 42859179 42859411 -159468936 + AluSx SINE Alu 49 306 -6 1500 143 23 53 chr4 42859411 42859540 -159468807 + AluJo SINE Alu 127 258 -54 2124 124 3 0 chr4 42859576 42859867 -159468480 + AluSx SINE Alu 1 292 -20 237 154 39 58 chr4 42859991 42860043 -159468304 - L2 LINE L2 -6 3266 3216 25 51 0 0 chr4 42860119 42860158 -159468189 + AT_rich Low_complexity Low_complexity 1 39 0 192 200 0 0 chr4 42860718 42860758 -159467589 + (TA)n Simple_repeat Simple_repeat 2 41 0 416 276 113 23 chr4 42861378 42861683 -159466664 + L1ME4a LINE L1 5704 6050 -71 2050 126 85 18 chr4 42861692 42862033 -159466314 + THE1B LTR MaLR 1 364 0 422 303 107 32 chr4 42862288 42862598 -159465749 - L3 LINE CR1 -41 1536 1204 910 110 24 0 chr4 42862659 42862786 -159465561 + FLAM_C SINE Alu 1 130 -13 222 309 95 0 chr4 42862947 42863031 -159465316 + MIR3 SINE MIR 113 204 -4 473 278 115 26 chr4 42863102 42863372 -159464975 + L1ME LINE L1 5529 5822 -299 23 0 0 0 chr4 42864040 42864063 -159464284 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 42865683 42865707 -159462640 + AT_rich Low_complexity Low_complexity 1 24 0 355 315 143 60 chr4 42866031 42866379 -159461968 + L3 LINE CR1 83 400 -1177 973 182 106 0 chr4 42866379 42866577 -159461770 - MER20 DNA MER1_type 0 219 1 355 315 143 60 chr4 42866577 42866850 -159461497 + L3 LINE CR1 400 756 -821 2460 73 3 0 chr4 42866916 42867218 -159461129 + AluSp SINE Alu 1 303 -10 342 0 0 0 chr4 42867259 42867297 -159461050 + (TG)n Simple_repeat Simple_repeat 2 39 0 24 0 0 0 chr4 42867311 42867335 -159461012 + AT_rich Low_complexity Low_complexity 1 24 0 979 163 27 5 chr4 42868232 42868453 -159459894 - Charlie5 DNA MER1_type 0 2623 2398 4451 185 34 8 chr4 42868469 42869547 -159458800 - L1MA9 LINE L1 -38 6274 5169 414 230 17 17 chr4 42869549 42869668 -159458679 - MER33 DNA MER1_type -265 59 1 578 259 32 60 chr4 42869798 42869983 -159458364 - MIR SINE MIR 0 262 83 333 67 0 0 chr4 42870231 42870276 -159458071 + LTR54 LTR ERV1 402 446 -64 1849 143 38 126 chr4 42872449 42872855 -159455492 - MLT1D LTR MaLR 0 505 159 2280 89 24 0 chr4 42872855 42873146 -159455201 - AluSx SINE Alu -14 298 1 1849 143 38 126 chr4 42873146 42873293 -159455054 - MLT1D LTR MaLR -346 159 1 223 279 0 0 chr4 42873338 42873381 -159454966 + L2 LINE L2 3251 3293 -20 2248 107 0 7 chr4 42873653 42873952 -159454395 + AluSx SINE Alu 1 297 -15 27 0 0 26 chr4 42874291 42874308 -159454039 + AT_rich Low_complexity Low_complexity 1 17 -20 1460 163 16 82 chr4 42874308 42874614 -159453733 + AluSx SINE Alu 5 290 -22 27 0 0 26 chr4 42874614 42874634 -159453713 + AT_rich Low_complexity Low_complexity 17 37 0 2032 112 24 20 chr4 42874846 42875140 -159453207 - AluSx SINE Alu -13 299 5 1553 80 0 0 chr4 42875350 42875538 -159452809 - AluY SINE Alu -18 293 106 963 172 20 44 chr4 42875567 42875771 -159452576 + MER20 DNA MER1_type 1 199 -20 2389 88 3 0 chr4 42876018 42876315 -159452032 + AluSp SINE Alu 1 298 -15 1090 240 35 35 chr4 42876566 42876908 -159451439 + L1ME LINE L1 292 633 -5437 1015 224 101 58 chr4 42876939 42877336 -159451011 + MLT2D LTR ERVL 1 414 0 2637 204 21 38 chr4 42877336 42877967 -159450380 + MLT1-int LTR MaLR 1 620 -751 342 167 97 0 chr4 42877968 42878040 -159450307 + AluS SINE Alu 1 79 -223 1153 105 6 12 chr4 42878141 42878362 -159449985 + AluSg/x SINE Alu 124 343 0 292 220 0 0 chr4 42878362 42878421 -159449926 + MLT1-int LTR MaLR 611 669 -702 287 261 0 0 chr4 42878426 42878495 -159449852 + MLT1-int LTR MaLR 819 887 -484 293 197 0 56 chr4 42878530 42878601 -159449746 + MLT-int LTR MaLR 678 744 -991 2131 226 19 11 chr4 42878665 42879133 -159449214 + MLT1A2-int LTR MaLR 1264 1735 0 598 256 17 23 chr4 42879133 42879309 -159449038 + MLT1A2 LTR MaLR 1 175 -199 312 222 0 12 chr4 42879378 42879459 -159448888 + MLT1A2 LTR MaLR 178 257 -108 1761 271 76 18 chr4 42879502 42879600 -159448747 + L1M4b LINE L1 1413 1504 -5634 2211 106 3 0 chr4 42879600 42879892 -159448455 + AluSp SINE Alu 1 293 -20 1761 271 76 18 chr4 42879892 42880835 -159447512 + L1M4b LINE L1 1504 2686 -4452 2522 62 0 3 chr4 42880851 42881158 -159447189 + AluY SINE Alu 6 311 0 810 236 7 17 chr4 42881982 42882275 -159446072 + AluY SINE Alu 22 311 0 2311 94 0 16 chr4 42882670 42882978 -159445369 + AluSx SINE Alu 1 303 -9 448 286 105 0 chr4 42883473 42883606 -159444741 + MIR SINE MIR 5 151 -111 189 0 0 0 chr4 42884018 42884039 -159444308 + (CA)n Simple_repeat Simple_repeat 2 22 0 1992 158 10 6 chr4 42884109 42884420 -159443927 + AluSx SINE Alu 1 312 0 662 208 23 0 chr4 42885627 42885757 -159442590 + FLAM_A SINE Alu 1 133 0 1910 162 7 0 chr4 42885790 42886087 -159442260 + AluSx SINE Alu 1 299 -13 351 0 0 0 chr4 42886088 42886127 -159442220 + (CA)n Simple_repeat Simple_repeat 2 40 0 1587 152 20 54 chr4 42886130 42886426 -159441921 + AluJo SINE Alu 1 286 -26 457 243 102 52 chr4 42886457 42886711 -159441636 + L1ME LINE L1 5280 5558 -563 2360 94 0 0 chr4 42886711 42887008 -159441339 + AluSc SINE Alu 1 297 -12 457 243 102 52 chr4 42887008 42887099 -159441248 + L1ME LINE L1 5558 5643 -478 2091 116 3 7 chr4 42887108 42887402 -159440945 + AluSg SINE Alu 1 293 -17 473 254 70 0 chr4 42887969 42888083 -159440264 - L2 LINE L2 0 3313 3192 2034 117 34 7 chr4 42888606 42888897 -159439450 - AluSg SINE Alu -11 299 1 2244 92 14 3 chr4 42888983 42889276 -159439071 + AluSp SINE Alu 1 296 -17 232 171 0 0 chr4 42889544 42889579 -159438768 - L2 LINE L2 -95 3218 3184 244 296 131 48 chr4 42889862 42890214 -159438133 + L2 LINE L2 2209 2589 -725 2832 98 18 48 chr4 42890285 42890538 -159437809 + L1PB1 LINE L1 5725 5961 -190 2485 61 0 0 chr4 42890538 42890831 -159437516 + AluY SINE Alu 8 300 -11 2832 98 18 48 chr4 42890831 42891016 -159437331 + L1PB1 LINE L1 5961 6150 -1 29 0 0 0 chr4 42891016 42891045 -159437302 + AT_rich Low_complexity Low_complexity 1 29 0 1957 131 3 48 chr4 42891075 42891209 -159437138 + AluSx SINE Alu 1 139 -173 1992 123 0 11 chr4 42891209 42891494 -159436853 + AluSx SINE Alu 1 282 -30 517 14 14 14 chr4 42891499 42891570 -159436777 + (TAAAA)n Simple_repeat Simple_repeat 2 72 0 1957 131 3 48 chr4 42891570 42891743 -159436604 + AluSx SINE Alu 143 300 -12 1976 126 0 0 chr4 42892097 42892368 -159435979 + AluSx SINE Alu 1 271 -41 225 0 0 0 chr4 42892375 42892400 -159435947 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 3934 195 78 19 chr4 42892457 42892757 -159435590 + L1M4 LINE L1 4053 4334 -1812 1937 71 61 11 chr4 42892757 42893037 -159435310 + AluY SINE Alu 1 294 -17 3934 195 78 19 chr4 42893037 42893706 -159434641 + L1M4 LINE L1 4334 5080 -1066 278 254 114 0 chr4 42894813 42894927 -159433420 - L1MC/D LINE L1 -1942 5866 5740 1889 148 16 16 chr4 42895002 42895312 -159433035 + AluSx SINE Alu 1 310 -2 971 193 12 12 chr4 42895331 42895497 -159432850 + FRAM SINE Alu 1 166 0 445 184 43 85 chr4 42896116 42896257 -159432090 - MIR SINE MIR -54 208 74 206 288 303 0 chr4 42896418 42896484 -159431863 + MIR SINE MIR 3 89 -119 207 0 0 0 chr4 42896551 42896574 -159431773 + (A)n Simple_repeat Simple_repeat 1 23 0 2153 92 7 7 chr4 42898116 42898411 -159429936 + AluSx SINE Alu 1 295 -17 284 238 191 0 chr4 42898825 42898909 -159429438 + MIR SINE MIR 31 130 -132 1152 214 231 30 chr4 42899224 42899630 -159428717 + MLT1H1 LTR MaLR 66 553 -2 314 182 36 36 chr4 42899650 42899706 -159428641 + Alu SINE Alu 1 48 -253 5607 125 8 43 chr4 42899741 42900345 -159428002 - Tigger4(Zombi) DNA MER2_type -1489 1242 679 2089 97 0 0 chr4 42900345 42900614 -159427733 - AluSg SINE Alu -13 297 29 5607 125 8 43 chr4 42900614 42900921 -159427426 - Tigger4(Zombi) DNA MER2_type -2052 679 363 732 153 0 93 chr4 42900929 42901079 -159427268 + FLAM_C SINE Alu 2 137 -6 2202 136 0 0 chr4 42901205 42901507 -159426840 - AluSx SINE Alu -10 302 1 2401 119 22 38 chr4 42901520 42901890 -159426457 + THE1B LTR MaLR 1 364 0 13030 73 10 0 chr4 42901890 42903454 -159424893 + THE1B-int LTR MaLR 1 1580 0 2417 123 22 30 chr4 42903454 42903821 -159424526 + THE1B LTR MaLR 1 364 0 224 29 86 0 chr4 42904180 42904215 -159424132 + T-rich Low_complexity Low_complexity 2 39 0 829 125 0 0 chr4 42904215 42904335 -159424012 - FLAM_C SINE Alu -23 120 1 277 89 0 0 chr4 42904666 42904711 -159423636 - Alu SINE Alu 0 308 264 861 119 0 0 chr4 42904721 42904839 -159423508 - AluSq/x SINE Alu -194 119 2 2360 86 3 0 chr4 42904885 42905176 -159423171 + AluSp SINE Alu 1 292 -21 1708 156 7 30 chr4 42905574 42905869 -159422478 - AluSx SINE Alu -19 293 6 1152 65 179 6 chr4 42905998 42906166 -159422181 - AluYa8 SINE Alu -8 302 106 16110 141 18 20 chr4 42907569 42907635 -159420712 - L1MA2 LINE L1 -108 7615 7550 2072 71 93 0 chr4 42907635 42907904 -159420443 - AluSp SINE Alu -19 294 1 16110 141 18 20 chr4 42907904 42908147 -159420200 - L1MA2 LINE L1 -173 7550 7308 2376 100 0 0 chr4 42908147 42908448 -159419899 - AluSg SINE Alu -1 309 9 16110 141 18 20 chr4 42908448 42909972 -159418375 - L1MA2 LINE L1 -415 7308 5782 1695 106 80 4 chr4 42909972 42910274 -159418073 - AluSx SINE Alu 0 322 1 16110 141 18 20 chr4 42910274 42912319 -159416028 - L1MA2 LINE L1 -1941 5782 3741 1162 67 0 0 chr4 42912324 42912474 -159415873 - L1PA8 LINE L1 -104 6068 5919 * 18549 135 27 62 chr4 42912471 42912709 -159415638 - L1MA2 LINE L1 -4338 3227 2982 2150 117 0 17 chr4 42912709 42913009 -159415338 - AluSx SINE Alu -17 295 1 18549 135 27 62 chr4 42913009 42913660 -159414687 - L1MA2 LINE L1 -4583 2982 2310 2199 109 3 3 chr4 42913660 42913964 -159414383 + AluSp SINE Alu 1 304 -9 18549 135 27 62 chr4 42913964 42914053 -159414294 - L1MA2 LINE L1 -5255 2310 2219 1674 124 4 8 chr4 42914053 42914302 -159414045 - AluSp SINE Alu -60 253 6 18549 135 27 62 chr4 42914302 42916649 -159411698 - L1MA2 LINE L1 -5346 2219 17 1612 138 16 81 chr4 42916649 42916824 -159411523 - AluJo SINE Alu -13 299 153 2319 103 0 3 chr4 42916824 42917126 -159411221 - AluSg SINE Alu -9 301 1 1612 138 16 81 chr4 42917126 42917270 -159411077 - AluJo SINE Alu -159 153 1 1573 173 38 0 chr4 42917282 42917571 -159410776 - AluJo SINE Alu -2 310 11 27 29 0 0 chr4 42917727 42917761 -159410586 + AT_rich Low_complexity Low_complexity 1 34 0 2223 108 0 0 chr4 42917809 42918105 -159410242 - AluSq SINE Alu -17 296 1 3717 209 44 92 chr4 42918118 42918784 -159409563 + L1MC4a LINE L1 6568 7265 -543 2289 94 0 10 chr4 42918784 42919110 -159409237 + AluSc SINE Alu 1 323 0 3717 209 44 92 chr4 42919110 42919165 -159409182 + L1MC4a LINE L1 7265 7321 -487 2254 92 0 3 chr4 42919165 42919459 -159408888 + AluSg SINE Alu 1 293 -17 3717 209 44 92 chr4 42919459 42920073 -159408274 + L1MC4a LINE L1 7321 7808 0 835 138 9 0 chr4 42920158 42920274 -159408073 + FLAM_C SINE Alu 2 118 -15 2293 108 0 0 chr4 42920299 42920596 -159407751 + AluSg SINE Alu 1 297 -13 1860 147 0 13 chr4 42920710 42921010 -159407337 + AluJb SINE Alu 1 296 -16 878 221 0 17 chr4 42921076 42921248 -159407099 - FRAM SINE Alu -7 169 1 2555 257 93 33 chr4 42921266 42922164 -159406183 + L2 LINE L2 1997 2948 -366 194 0 0 37 chr4 42922432 42922459 -159405888 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 748 265 53 8 chr4 42922728 42922811 -159405536 + HAL1 LINE L1 1548 1626 -881 2134 108 11 0 chr4 42922811 42923141 -159405206 - AluSg SINE Alu 0 333 1 748 265 53 8 chr4 42923141 42923301 -159405046 + HAL1 LINE L1 1626 1803 -704 538 247 171 65 chr4 42923406 42923726 -159404621 + HAL1 LINE L1 1691 1976 -531 2329 110 0 7 chr4 42923726 42924036 -159404311 + AluSx SINE Alu 1 308 -4 538 247 171 65 chr4 42924036 42924266 -159404081 + HAL1 LINE L1 1976 2299 -208 2094 130 3 7 chr4 42924274 42924582 -159403765 + AluSx SINE Alu 1 307 -5 705 142 16 8 chr4 42924694 42924821 -159403526 + L1MB8 LINE L1 6051 6178 0 3974 111 5 12 chr4 42924898 42925474 -159402873 + L1MA5 LINE L1 5723 6294 -6 707 213 0 0 chr4 42925498 42925620 -159402727 + FLAM_A SINE Alu 6 127 -15 279 216 0 0 chr4 42925662 42925713 -159402634 + L3 LINE CR1 1525 1575 -2 2095 142 0 0 chr4 42925861 42926157 -159402190 + AluSx SINE Alu 3 298 -14 1642 185 29 77 chr4 42926216 42926412 -159401935 - MLT1A1 LTR MaLR 0 365 161 1255 158 224 8 chr4 42926412 42926666 -159401681 + AluSg SINE Alu 1 309 -1 1642 185 29 77 chr4 42926666 42926694 -159401653 - MLT1A1 LTR MaLR -204 161 133 2217 91 31 0 chr4 42926694 42926981 -159401366 - AluSg SINE Alu -14 296 1 1642 185 29 77 chr4 42926981 42927134 -159401213 - MLT1A1 LTR MaLR -232 133 5 1873 150 6 31 chr4 42927286 42927606 -159400741 - AluJb SINE Alu 0 312 1 1018 96 22 0 chr4 42927607 42927743 -159400604 - AluJb SINE Alu -171 141 3 1277 171 3 108 chr4 42927817 42927989 -159400358 - AluSp SINE Alu -28 285 97 3002 140 17 42 chr4 42927989 42928020 -159400327 - L1MB3 LINE L1 -2 6181 6151 2198 99 17 14 chr4 42928020 42928149 -159400198 + AluSg SINE Alu 1 128 -182 2674 42 0 0 chr4 42928149 42928460 -159399887 + AluY SINE Alu 1 311 0 2198 99 17 14 chr4 42928460 42928624 -159399723 + AluSg SINE Alu 128 295 -15 3002 140 17 42 chr4 42928624 42929119 -159399228 - L1MB3 LINE L1 -32 6151 5668 1760 137 54 7 chr4 42929119 42929418 -159398929 - AluSg SINE Alu 0 310 5 1277 171 3 108 chr4 42929418 42929531 -159398816 - AluSp SINE Alu -214 99 29 1186 194 16 25 chr4 42929545 42929787 -159398560 - L1MB3 LINE L1 -510 5673 5434 2365 107 3 0 chr4 42929978 42930286 -159398061 - AluSg SINE Alu -1 309 1 1212 187 9 23 chr4 42930324 42930543 -159397804 - AluJb SINE Alu -12 300 85 356 217 12 12 chr4 42930546 42930629 -159397718 - L1MB3 LINE L1 -1768 4378 4296 570 167 73 0 chr4 42930629 42930725 -159397622 + U6 snRNA snRNA 1 103 -4 231 174 43 0 chr4 42930732 42930778 -159397569 + Alu SINE Alu 86 133 0 244 254 0 0 chr4 42930835 42930890 -159397457 + A-rich Low_complexity Low_complexity 1 55 0 2093 123 10 23 chr4 42930900 42931210 -159397137 + AluSx SINE Alu 1 306 -6 2232 101 0 0 chr4 42931210 42931497 -159396850 + AluY SINE Alu 1 287 -24 321 243 156 10 chr4 42931497 42931631 -159396716 + MLT1C LTR MaLR 212 388 -117 1025 241 15 23 chr4 42931822 42932087 -159396260 - L1MB3 LINE L1 -1839 4307 4045 963 217 6 0 chr4 42932095 42932261 -159396086 - FAM SINE Alu -7 168 2 2192 118 3 10 chr4 42932323 42932628 -159395719 - AluSx SINE Alu -9 303 1 679 301 91 72 chr4 42932778 42933058 -159395289 - L1ME4a LINE L1 -260 5861 5588 1659 124 167 8 chr4 42933058 42933316 -159395031 + AluSg SINE Alu 1 299 -1 956 220 0 12 chr4 42933318 42933486 -159394861 + AluJo/FRAM SINE Alu 137 302 0 282 116 0 0 chr4 42933494 42933537 -159394810 + (TA)n Simple_repeat Simple_repeat 2 44 0 679 301 91 72 chr4 42933537 42933644 -159394703 - L1ME4a LINE L1 -539 5582 5479 2399 77 3 3 chr4 42933644 42933944 -159394403 + AluSx SINE Alu 1 300 -12 679 301 91 72 chr4 42933944 42934124 -159394223 - L1ME4a LINE L1 -642 5479 5270 48 53 0 0 chr4 42934194 42934270 -159394077 + AT_rich Low_complexity Low_complexity 1 76 0 283 186 47 23 chr4 42934328 42934414 -159393933 - L1MB2 LINE L1 0 6171 6084 880 174 0 0 chr4 42934631 42934763 -159393584 - FLAM_C SINE Alu -1 132 1 287 284 95 21 chr4 42934777 42934872 -159393475 - L2 LINE L2 -2 3270 3169 261 57 0 0 chr4 42934884 42934919 -159393428 + (GA)n Simple_repeat Simple_repeat 2 36 0 1977 87 33 4 chr4 42935075 42935351 -159392996 + L1PA13 LINE L1 5880 6163 0 2556 47 0 0 chr4 42935366 42935666 -159392681 + AluY SINE Alu 1 300 -11 288 176 0 0 chr4 42935889 42935940 -159392407 - MIR SINE MIR -25 237 187 427 183 349 0 chr4 42935975 42936101 -159392246 - MIR SINE MIR -62 200 31 2435 93 3 0 chr4 42936122 42936434 -159391913 - AluSq SINE Alu 0 313 1 732 180 0 39 chr4 42936443 42936571 -159391776 - FLAM_A SINE Alu -10 123 1 1201 185 0 10 chr4 42936635 42936864 -159391483 - AluJo SINE Alu 0 312 86 2175 130 10 0 chr4 42937074 42937382 -159390965 - AluSx SINE Alu -1 311 1 1672 168 11 7 chr4 42937419 42937705 -159390642 + AluJo SINE Alu 1 287 -25 40 73 0 0 chr4 42937698 42937780 -159390567 + AT_rich Low_complexity Low_complexity 1 82 0 201 122 0 49 chr4 42939666 42939707 -159388640 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 652 290 6 0 chr4 42939945 42940121 -159388226 - MIR SINE MIR 0 262 86 1300 132 6 0 chr4 42940769 42940951 -159387396 - AluSg/x SINE Alu -10 300 118 2213 109 13 0 chr4 42941093 42941396 -159386951 + AluSg SINE Alu 1 307 -3 21 0 0 0 chr4 42941811 42941832 -159386515 + AT_rich Low_complexity Low_complexity 1 21 0 1513 71 33 19 chr4 42942492 42942729 -159385618 - AluSp SINE Alu 0 308 69 861 64 0 0 chr4 42942754 42942913 -159385434 - AluSg/x SINE Alu 0 333 175 1209 101 0 0 chr4 42942972 42943131 -159385216 - AluSg/x SINE Alu -17 295 137 476 126 320 39 chr4 42943184 42943287 -159385060 + FLAM_C SINE Alu 1 132 -1 524 134 12 0 chr4 42943298 42943380 -159384967 + L1PB3 LINE L1 5868 5950 -204 302 87 12 22 chr4 42943388 42943443 -159384904 - L1PB3 LINE L1 -192 5959 5905 1252 136 10 20 chr4 42943472 42943671 -159384676 + L1PB3 LINE L1 5956 6152 -2 182 229 125 0 chr4 42943740 42943788 -159384559 - MIR SINE MIR -76 186 133 394 306 106 68 chr4 42944058 42944293 -159384054 + L2 LINE L2 3026 3269 -3 532 207 26 9 chr4 42944405 42944521 -159383826 - MLT1K LTR MaLR 0 588 471 1644 172 3 50 chr4 42944875 42945215 -159383132 + AluJb SINE Alu 1 326 0 1186 145 18 61 chr4 42945341 42945569 -159382778 - MER20 DNA MER1_type -1 218 1 2434 97 0 0 chr4 42946036 42946344 -159382003 + AluSg SINE Alu 1 308 -2 1435 116 5 0 chr4 42946460 42946659 -159381688 - AluSx SINE Alu -112 200 1 949 218 0 0 chr4 42946794 42946959 -159381388 + FRAM SINE Alu 1 165 -1 26 50 0 0 chr4 42947083 42947123 -159381224 + AT_rich Low_complexity Low_complexity 1 40 0 279 0 0 0 chr4 42947555 42947586 -159380761 + (CA)n Simple_repeat Simple_repeat 2 32 0 236 242 74 21 chr4 42947684 42947779 -159380568 + L1MC5 LINE L1 7832 7931 -30 1658 189 13 17 chr4 42947945 42948246 -159380101 + AluJo SINE Alu 1 300 -12 1826 122 76 0 chr4 42948751 42949041 -159379306 - AluSp SINE Alu 0 310 1 477 303 72 10 chr4 42949170 42949367 -159378980 - MIR SINE MIR -10 252 45 2074 109 20 10 chr4 42949690 42949984 -159378363 - AluSx SINE Alu -15 297 1 2084 143 13 0 chr4 42950112 42950419 -159377928 + AluSx SINE Alu 1 311 -1 2259 99 10 10 chr4 42950938 42951241 -159377106 + AluSx SINE Alu 1 303 -9 1296 118 0 0 chr4 42951241 42951410 -159376937 + AluSq SINE Alu 134 302 -11 1889 151 35 3 chr4 42951977 42952262 -159376085 - AluJb SINE Alu -18 294 1 256 240 50 84 chr4 42952266 42952445 -159375902 - L1ME4a LINE L1 -3 6118 5946 1976 144 7 17 chr4 42952914 42953213 -159375134 + AluSx SINE Alu 1 296 -16 1989 121 7 4 chr4 42953213 42953492 -159374855 - AluSx SINE Alu -31 281 1 341 277 66 108 chr4 42953665 42953831 -159374516 + MIR3 SINE MIR 30 188 -20 633 296 17 0 chr4 42953875 42954047 -159374300 + MIR SINE MIR 88 262 0 2276 100 0 17 chr4 42954212 42954513 -159373834 - AluSx SINE Alu -16 296 1 187 115 0 0 chr4 42954990 42955016 -159373331 + MIR SINE MIR 49 74 -188 281 252 126 39 chr4 42955126 42955253 -159373094 - L2 LINE L2 -3 3269 3132 28 0 0 0 chr4 42955289 42955317 -159373030 + AT_rich Low_complexity Low_complexity 1 28 0 661 139 191 0 chr4 42955351 42955466 -159372881 + AluJo SINE Alu 2 138 -174 2176 128 3 3 chr4 42955511 42955816 -159372531 - AluJb SINE Alu -6 306 2 372 247 0 0 chr4 42955923 42956008 -159372339 - MER69 DNA AcHobo -2441 85 1 21 0 0 0 chr4 42956036 42956057 -159372290 + AT_rich Low_complexity Low_complexity 1 21 0 2229 109 10 0 chr4 42956073 42956375 -159371972 - AluSx SINE Alu -7 305 1 1897 148 0 40 chr4 42956885 42957188 -159371159 - AluJb SINE Alu -21 291 1 2204 110 3 16 chr4 42957282 42957418 -159370929 + AluSx SINE Alu 1 137 -175 2262 88 3 0 chr4 42957418 42957712 -159370635 + AluY SINE Alu 1 295 -16 2204 110 3 16 chr4 42957712 42957885 -159370462 + AluSx SINE Alu 137 306 -6 1777 153 7 17 chr4 42958137 42958431 -159369916 - AluJo SINE Alu -17 295 5 523 191 0 0 chr4 42958541 42958630 -159369717 + FLAM SINE Alu 43 131 -12 2329 103 0 0 chr4 42958647 42958948 -159369399 + AluSx SINE Alu 1 301 -11 353 340 16 24 chr4 42959231 42959420 -159368927 - MIR SINE MIR -55 207 20 2357 106 0 3 chr4 42959593 42959905 -159368442 + AluSq SINE Alu 3 313 0 27 49 0 0 chr4 42960125 42960166 -159368181 + AT_rich Low_complexity Low_complexity 1 41 0 2199 93 0 7 chr4 42960166 42960455 -159367892 - AluSq SINE Alu -26 287 1 2201 112 0 29 chr4 42962040 42962354 -159365993 - AluSx SINE Alu -5 307 3 1826 153 3 42 chr4 42962362 42962675 -159365672 - AluJb SINE Alu -11 301 1 2351 67 3 27 chr4 42962698 42962997 -159365350 - AluSp SINE Alu -21 292 1 2177 119 3 0 chr4 42963451 42963746 -159364601 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr4 42963964 42963987 -159364360 + AT_rich Low_complexity Low_complexity 1 23 0 659 275 66 41 chr4 42964224 42964328 -159364019 - MIR SINE MIR 0 262 162 2240 105 0 3 chr4 42964328 42964624 -159363723 - AluSq SINE Alu -16 297 3 659 275 66 41 chr4 42964624 42964779 -159363568 - MIR SINE MIR -100 162 4 540 226 16 8 chr4 42964815 42964939 -159363408 - MIR SINE MIR 0 262 138 2378 109 0 0 chr4 42965024 42965335 -159363012 + AluSx SINE Alu 1 311 -1 2359 92 0 0 chr4 42966259 42966553 -159361794 - AluSx SINE Alu -18 294 1 2045 125 10 3 chr4 42966575 42966864 -159361483 - AluSx SINE Alu -21 291 1 2351 109 0 0 chr4 42966869 42967172 -159361175 - AluSq SINE Alu -10 303 1 2373 102 0 9 chr4 42968141 42968456 -159359891 - AluSq SINE Alu -1 312 1 359 261 23 0 chr4 42968501 42968589 -159359758 - MIR3 SINE MIR -8 200 111 216 272 152 11 chr4 42969611 42969703 -159358644 - L2 LINE L2 -22 3250 3146 608 256 103 51 chr4 42969890 42970202 -159358145 + L2 LINE L2 2984 3311 -2 21 0 0 0 chr4 42970218 42970239 -159358108 + AT_rich Low_complexity Low_complexity 1 21 0 304 270 0 14 chr4 42970270 42970344 -159358003 - MIR3 SINE MIR -21 187 115 1653 193 17 3 chr4 42970450 42970745 -159357602 - AluJo SINE Alu -13 299 1 277 276 0 0 chr4 42970759 42970817 -159357530 - MIR SINE MIR -115 147 90 2109 95 0 89 chr4 42970901 42971105 -159357242 - AluSx SINE Alu -1 311 147 2161 120 0 23 chr4 42971105 42971414 -159356933 - AluSq SINE Alu -11 302 1 2109 95 0 89 chr4 42971414 42971547 -159356800 - AluSx SINE Alu -165 147 4 2186 129 3 3 chr4 42971580 42971890 -159356457 - AluSx SINE Alu 0 312 3 1646 121 106 4 chr4 42972039 42972304 -159356043 - AluSq SINE Alu -21 292 1 1967 155 7 0 chr4 42972311 42972602 -159355745 - AluSx SINE Alu -19 293 1 383 337 12 66 chr4 42972990 42973113 -159355234 - MLT1K LTR MaLR -378 210 82 671 125 21 0 chr4 42973113 42973209 -159355138 + HY3 scRNA scRNA 1 98 -3 405 0 0 0 chr4 42973214 42973259 -159355088 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 383 337 12 66 chr4 42973259 42973295 -159355052 - MLT1K LTR MaLR -510 78 54 1834 128 40 40 chr4 42973408 42973704 -159354643 + AluJb SINE Alu 1 296 -16 2095 210 184 84 chr4 42973775 42973884 -159354463 - L1MC4 LINE L1 -1 8041 7944 2285 98 0 3 chr4 42973884 42974180 -159354167 - AluSg SINE Alu -15 295 1 2095 210 184 84 chr4 42974180 42974688 -159353659 - L1MC4 LINE L1 -98 7944 7489 568 210 0 57 chr4 42974688 42974812 -159353535 + FLAM_C SINE Alu 1 117 -16 2095 210 184 84 chr4 42974812 42974910 -159353437 - L1MC4 LINE L1 -553 7489 7402 1916 132 6 49 chr4 42974910 42975236 -159353111 + AluSx SINE Alu 1 312 0 2095 210 184 84 chr4 42975236 42975321 -159353026 - L1MC4 LINE L1 -640 7402 7327 2260 79 7 0 chr4 42975321 42975629 -159352718 + AluSq SINE Alu 1 310 0 2095 210 184 84 chr4 42975629 42975984 -159352363 - L1MC4 LINE L1 -715 7327 6765 209 337 12 0 chr4 42976638 42976721 -159351626 - MIR SINE MIR -71 191 108 2271 82 0 58 chr4 42976939 42977267 -159351080 - AluSp SINE Alu -4 309 1 420 109 94 0 chr4 42977666 42977730 -159350617 + AluJ/FLAM SINE Alu 2 71 -241 579 108 36 0 chr4 42979243 42979326 -159349021 - L1MA1 LINE L1 -9 6293 6208 205 330 43 32 chr4 42979326 42979413 -159348934 - L2 LINE L2 -1999 1315 1225 1974 124 26 10 chr4 42980488 42980794 -159347553 + AluSq SINE Alu 1 311 -2 2273 110 3 0 chr4 42981089 42981399 -159346948 + AluSx SINE Alu 1 311 -1 1578 170 52 0 chr4 42983135 42983405 -159344942 + AluJb SINE Alu 4 287 -25 502 289 168 36 chr4 42983815 42984179 -159344168 - L2 LINE L2 -35 3278 2867 248 288 280 0 chr4 42984254 42984372 -159343975 - L2 LINE L2 -561 2753 2603 1086 218 41 26 chr4 42984633 42984904 -159343443 + AluJo SINE Alu 5 279 -33 331 191 133 29 chr4 42985154 42985259 -159343088 - L2 LINE L2 -2447 867 752 1611 105 5 5 chr4 42986517 42986736 -159341611 + AluSc SINE Alu 1 219 -90 681 191 0 0 chr4 42986894 42986999 -159341348 + AluJo SINE Alu 38 142 -170 1115 177 19 0 chr4 42987019 42987228 -159341119 + AluJb SINE Alu 79 291 -21 735 174 45 39 chr4 42987423 42987578 -159340769 + L1MA7 LINE L1 6132 6287 -4 692 132 116 33 chr4 42988698 42988819 -159339528 + FLAM_C SINE Alu 2 132 -1 271 224 37 65 chr4 42990683 42990790 -159337557 - MIR SINE MIR 0 262 159 1820 66 0 4 chr4 42991214 42991441 -159336906 + AluSc SINE Alu 84 309 0 2632 40 0 10 chr4 42991702 42992005 -159336342 + AluY SINE Alu 1 300 -11 2293 106 7 0 chr4 42993143 42993445 -159334902 - AluSg SINE Alu -6 304 1 34 24 0 0 chr4 42993795 42993836 -159334511 + AT_rich Low_complexity Low_complexity 1 41 0 2011 119 14 10 chr4 42994155 42994448 -159333899 + AluSx SINE Alu 1 294 -18 562 220 113 12 chr4 42994551 42994719 -159333628 - AluJb SINE Alu -14 298 114 308 180 20 0 chr4 42996081 42996131 -159332216 - Alu SINE Alu -249 51 1 1838 168 3 20 chr4 42996800 42997104 -159331243 + AluJb SINE Alu 1 299 -13 1472 174 71 18 chr4 42997248 42997530 -159330817 - AluJo SINE Alu -15 297 1 344 250 20 0 chr4 42997660 42997760 -159330587 - L1ME3 LINE L1 -211 5951 5850 1989 114 28 0 chr4 42998420 42998709 -159329638 - AluSx SINE Alu -15 297 1 1728 144 7 31 chr4 42998711 42999002 -159329345 - AluJo SINE Alu -3 309 26 320 250 36 36 chr4 42999069 42999181 -159329166 + MER112 DNA MER1_type 138 249 -11 1479 165 55 52 chr4 42999190 42999481 -159328866 + AluJo SINE Alu 3 294 -18 32 81 0 0 chr4 43000646 43000720 -159327627 + AT_rich Low_complexity Low_complexity 1 74 0 2243 105 7 10 chr4 43000950 43001255 -159327092 + AluSp SINE Alu 1 304 -9 341 95 16 0 chr4 43001255 43001318 -159327029 + (TA)n Simple_repeat Simple_repeat 2 65 0 2032 112 35 11 chr4 43001360 43001647 -159326700 + AluSx SINE Alu 12 305 -7 266 151 0 0 chr4 43003043 43003096 -159325251 + L1PA15 LINE L1 6112 6164 -1 186 304 36 0 chr4 43003780 43003836 -159324511 + L2 LINE L2 3182 3239 -33 2035 131 0 64 chr4 43004079 43004270 -159324077 - AluSq SINE Alu -6 307 144 2280 103 10 13 chr4 43004270 43004580 -159323767 - AluSx SINE Alu -3 309 1 2035 131 0 64 chr4 43004580 43004716 -159323631 - AluSq SINE Alu -169 144 1 1989 113 33 95 chr4 43004716 43004863 -159323484 - Tigger2a DNA MER2_type -2334 374 219 318 106 0 0 chr4 43004863 43004910 -159323437 + (CA)n Simple_repeat Simple_repeat 2 48 0 1989 113 33 95 chr4 43004910 43005161 -159323186 - Tigger2a DNA MER2_type -2489 219 1 300 271 35 0 chr4 43005407 43005492 -159322855 - L2 LINE L2 0 3272 3185 2449 72 7 3 chr4 43006735 43007041 -159321306 + AluY SINE Alu 1 307 -4 911 151 36 18 chr4 43007044 43007210 -159321137 + AluJo/FRAM SINE Alu 137 305 -7 657 216 0 0 chr4 43007217 43007333 -159321014 + FLAM_A SINE Alu 1 116 -17 1959 127 7 0 chr4 43007338 43007622 -159320725 - AluSx SINE Alu -2 310 25 1115 150 0 27 chr4 43007723 43007910 -159320437 - AluJo SINE Alu -47 265 84 320 0 25 0 chr4 43007930 43007970 -159320377 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2195 87 0 7 chr4 43007971 43008246 -159320101 - AluSq SINE Alu -37 276 4 21 0 0 0 chr4 43008397 43008418 -159319929 + AT_rich Low_complexity Low_complexity 1 21 0 314 242 163 22 chr4 43008601 43008779 -159319568 + L1MC4a LINE L1 5972 6174 -1634 1013 78 0 28 chr4 43009089 43009230 -159319117 - AluSg/x SINE Alu 0 312 176 27 49 0 0 chr4 43009340 43009381 -159318966 + AT_rich Low_complexity Low_complexity 1 41 0 2380 105 0 0 chr4 43010710 43011016 -159317331 + AluSq SINE Alu 1 306 -7 1626 163 39 25 chr4 43011169 43011452 -159316895 + AluJb SINE Alu 6 292 -20 1966 149 7 0 chr4 43011685 43011974 -159316373 + AluSx SINE Alu 1 291 -21 1869 153 14 7 chr4 43012390 43012677 -159315670 + AluSx SINE Alu 2 290 -22 1786 142 24 27 chr4 43012696 43012991 -159315356 + AluSx SINE Alu 1 294 -18 34 0 0 0 chr4 43014400 43014434 -159313913 + AT_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr4 43014697 43014733 -159313614 + AT_rich Low_complexity Low_complexity 1 36 0 1774 149 29 0 chr4 43014817 43015121 -159313226 - AluSx SINE Alu 0 312 1 1057 98 0 0 chr4 43015124 43015257 -159313090 - AluSq/x SINE Alu -179 133 1 857 236 110 16 chr4 43015277 43015523 -159312824 + MLT1J LTR MaLR 203 471 -40 803 106 0 0 chr4 43015919 43016023 -159312324 - AluY SINE Alu -16 295 192 329 316 96 3 chr4 43016181 43016373 -159311974 - MIR SINE MIR -10 252 45 2096 109 20 10 chr4 43016696 43016990 -159311357 - AluSx SINE Alu -15 297 1 2094 143 13 0 chr4 43017118 43017425 -159310922 + AluSx SINE Alu 1 311 -1 1848 109 18 21 chr4 43017944 43018260 -159310087 + AluSx SINE Alu 1 315 0 2116 112 3 45 chr4 43018428 43018742 -159309605 + AluJb SINE Alu 1 301 -11 2380 105 0 0 chr4 43020093 43020399 -159307948 + AluSq SINE Alu 1 306 -7 1649 159 39 25 chr4 43020552 43020835 -159307512 + AluJb SINE Alu 6 292 -20 1988 145 7 0 chr4 43021068 43021357 -159306990 + AluSx SINE Alu 1 291 -21 1772 164 18 7 chr4 43021777 43022063 -159306284 + AluSx SINE Alu 2 290 -22 2142 117 17 3 chr4 43022082 43022380 -159305967 + AluSx SINE Alu 1 302 -10 1896 124 44 0 chr4 43022439 43022714 -159305633 - AluSx SINE Alu -17 295 9 1807 136 31 7 chr4 43022913 43023200 -159305147 + AluSx SINE Alu 1 294 -18 30 0 0 0 chr4 43024612 43024642 -159303705 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr4 43024905 43024941 -159303406 + AT_rich Low_complexity Low_complexity 1 36 0 1774 149 29 0 chr4 43025025 43025329 -159303018 - AluSx SINE Alu 0 312 1 1057 98 0 0 chr4 43025332 43025465 -159302882 - AluSq/x SINE Alu -180 133 1 835 235 109 20 chr4 43025485 43025732 -159302615 + MLT1J LTR MaLR 203 471 -40 2201 115 0 3 chr4 43026128 43026424 -159301923 - AluY SINE Alu -16 295 1 1769 165 7 29 chr4 43026424 43026733 -159301614 - AluJb SINE Alu -10 302 1 378 179 60 0 chr4 43026764 43026831 -159301516 + AluJ/FRAM SINE Alu 228 298 -4 2058 130 10 7 chr4 43026833 43027119 -159301228 + AluSq SINE Alu 1 290 -23 315 0 0 0 chr4 43027119 43027154 -159301193 + (CA)n Simple_repeat Simple_repeat 2 36 0 2058 130 10 7 chr4 43027154 43027168 -159301179 + AluSq SINE Alu 290 302 -11 1579 150 24 12 chr4 43027237 43027490 -159300857 - AluJb SINE Alu -22 290 35 1323 218 127 19 chr4 43027512 43027991 -159300356 + LTR61 LTR ERV1 16 595 0 2145 153 30 14 chr4 43027991 43028358 -159299989 + HERV3 LTR ERV1 2 374 -8052 587 176 0 0 chr4 43028377 43028468 -159299879 + HERV3 LTR ERV1 894 984 -7442 * 10662 167 2 2 chr4 43028456 43030081 -159298266 + HERV3 LTR ERV1 1332 2957 -5469 * 11972 154 6 16 chr4 43030071 43030355 -159297992 + HERV3 LTR ERV1 4258 4543 -3883 2447 58 3 0 chr4 43030355 43030648 -159297699 + AluY SINE Alu 1 294 -17 11972 154 6 16 chr4 43030648 43032283 -159296064 + HERV3 LTR ERV1 4543 6221 -2205 2440 71 0 0 chr4 43032283 43032578 -159295769 + AluY SINE Alu 1 295 -16 1010 251 5 0 chr4 43032581 43032780 -159295567 + HERV3 LTR ERV1 6381 6580 -1846 * 1534 222 46 10 chr4 43032779 43033085 -159295262 + HERV3 LTR ERV1 8110 8426 0 334 302 0 54 chr4 43033109 43033238 -159295109 + LTR4 LTR ERV1 16 137 -459 485 120 0 6 chr4 43033273 43033354 -159294993 - L1MB4 LINE L1 -36 6138 6066 2301 90 10 0 chr4 43033835 43034124 -159294223 - AluSq SINE Alu -21 292 1 1913 128 7 20 chr4 43034377 43034540 -159293807 - AluSx SINE Alu -16 296 137 2095 113 20 0 chr4 43034540 43034833 -159293514 - AluSq SINE Alu -14 299 1 1913 128 7 20 chr4 43034833 43034967 -159293380 - AluSx SINE Alu -175 137 3 1211 124 11 0 chr4 43035040 43035217 -159293130 - AluSg/x SINE Alu 0 312 134 2238 121 0 0 chr4 43035217 43035522 -159292825 - AluSq SINE Alu -8 305 1 879 261 128 47 chr4 43035608 43036114 -159292233 - MLT1L LTR MaLR -61 554 8 614 276 25 5 chr4 43036117 43036316 -159292031 - MIR SINE MIR -8 254 52 460 179 0 12 chr4 43036333 43036417 -159291930 + L1MC4 LINE L1 7176 7258 -784 2174 92 3 7 chr4 43036420 43036736 -159291611 - AluSx SINE Alu 0 315 1 1422 181 127 0 chr4 43036738 43036997 -159291350 - AluJb SINE Alu -20 292 1 2269 220 46 15 chr4 43037030 43037484 -159290863 + MLT1F LTR MaLR 6 473 -69 649 114 57 171 chr4 43037486 43037532 -159290815 + L1MC4 LINE L1 7836 7886 -156 2076 119 61 3 chr4 43037532 43037825 -159290522 - AluSx SINE Alu -2 310 1 649 114 57 171 chr4 43037825 43038006 -159290341 + L1MC4 LINE L1 7886 8037 -5 301 262 87 56 chr4 43038026 43038152 -159290195 + Charlie8 DNA MER1_type 11 140 -2277 1237 108 30 0 chr4 43038153 43038319 -159290028 + AluSq SINE Alu 126 296 -17 277 222 32 0 chr4 43038557 43038620 -159289727 + MIR SINE MIR 56 120 -142 289 304 74 40 chr4 43038869 43039017 -159289330 - MIR SINE MIR -20 242 90 2492 80 3 0 chr4 43039123 43039425 -159288922 - AluSp SINE Alu -10 303 1 32 0 0 0 chr4 43039536 43039568 -159288779 + AT_rich Low_complexity Low_complexity 1 32 0 1991 141 7 3 chr4 43039785 43040082 -159288265 - AluJb SINE Alu -14 298 1 2079 70 48 7 chr4 43040164 43040464 -159287883 - AluSq SINE Alu 0 312 2 687 146 23 8 chr4 43040633 43040763 -159287584 + AluSg/x SINE Alu 177 308 -1 581 160 30 0 chr4 43041098 43041198 -159287149 - MER58 DNA MER1_type 0 2420 2318 643 129 29 107 chr4 43041216 43041356 -159286991 - FLAM_C SINE Alu -12 131 3 368 148 171 45 chr4 43041364 43041452 -159286895 - MER58 DNA MER1_type -110 105 7 2385 90 7 0 chr4 43042595 43042894 -159285453 + AluY SINE Alu 1 301 -10 2266 109 10 0 chr4 43043495 43043797 -159284550 - AluSx SINE Alu -4 308 4 2252 95 0 10 chr4 43043816 43044112 -159284235 - AluSg SINE Alu -17 293 1 2531 51 3 0 chr4 43044123 43044419 -159283928 - AluY SINE Alu -14 297 1 331 287 208 5 chr4 43044419 43044621 -159283726 + MIR SINE MIR 8 250 -12 1815 168 3 13 chr4 43045598 43045760 -159282587 - AluSx SINE Alu -17 295 136 2360 103 0 0 chr4 43045760 43046060 -159282287 - AluSg SINE Alu -9 301 2 1815 168 3 13 chr4 43046060 43046195 -159282152 - AluSx SINE Alu -176 136 1 357 156 47 0 chr4 43046614 43046678 -159281669 + MLT2C1 LTR ERVL 1 67 -330 2538 75 0 0 chr4 43046873 43047181 -159281166 + AluY SINE Alu 1 308 -3 1047 193 176 35 chr4 43047411 43047741 -159280606 - Tigger7 DNA MER2_type 0 2491 2 28 29 0 0 chr4 43048336 43048371 -159279976 + AT_rich Low_complexity Low_complexity 1 35 0 1906 137 13 10 chr4 43048796 43049095 -159279252 + AluJb SINE Alu 1 300 -12 721 184 16 0 chr4 43049725 43049850 -159278497 + FLAM_A SINE Alu 1 127 -6 447 246 164 0 chr4 43049970 43050104 -159278243 + MIR SINE MIR 93 248 -14 841 125 0 0 chr4 43050243 43050355 -159277992 - AluSx SINE Alu -23 287 176 523 191 0 11 chr4 43050355 43050449 -159277898 - AluSx SINE Alu -218 94 2 1463 181 56 36 chr4 43050513 43050816 -159277531 + AluJo SINE Alu 1 309 -3 1819 164 0 14 chr4 43051094 43051380 -159276967 - AluJo SINE Alu -30 282 1 1783 161 0 33 chr4 43051826 43052131 -159276216 - AluJb SINE Alu -17 295 1 1196 193 14 0 chr4 43052132 43052350 -159275997 - MER58A DNA MER1_type -3 221 1 406 252 145 13 chr4 43052406 43052565 -159275782 + MIR SINE MIR 70 249 -13 21 36 0 0 chr4 43053840 43053868 -159274479 + AT_rich Low_complexity Low_complexity 1 28 0 2244 108 3 7 chr4 43054110 43054407 -159273940 - AluSx SINE Alu -16 296 1 2288 92 24 0 chr4 43054555 43054847 -159273500 - AluSx SINE Alu -13 299 1 188 234 78 0 chr4 43054925 43054989 -159273358 + MIR SINE MIR 84 152 -110 1816 163 52 0 chr4 43055664 43055952 -159272395 - AluJb SINE Alu -9 303 1 2493 85 0 0 chr4 43056373 43056679 -159271668 - AluSc SINE Alu -3 306 1 1684 155 14 41 chr4 43057225 43057515 -159270832 - AluJb SINE Alu -30 282 1 219 36 0 0 chr4 43057517 43057545 -159270802 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2058 132 4 0 chr4 43057545 43057826 -159270521 - AluSx SINE Alu -30 282 1 729 221 19 0 chr4 43057828 43057982 -159270365 - AluJb SINE Alu -19 293 137 27 62 0 0 chr4 43058265 43058313 -159270034 + AT_rich Low_complexity Low_complexity 1 48 0 472 217 89 38 chr4 43058390 43058547 -159269800 + L1MC5 LINE L1 7258 7422 -539 2082 127 7 0 chr4 43058552 43058844 -159269503 - AluSx SINE Alu -18 294 1 1395 134 0 14 chr4 43058926 43059142 -159269205 + AluJb SINE Alu 84 296 -16 373 251 246 0 chr4 43059142 43059309 -159269038 + L1MC5 LINE L1 7706 7913 -48 2389 72 3 23 chr4 43060048 43060353 -159267994 - AluSx SINE Alu -13 299 1 950 241 60 44 chr4 43060487 43060763 -159267584 - L1ME3A LINE L1 -114 6056 5773 2160 132 0 6 chr4 43060763 43061074 -159267273 - AluSx SINE Alu -3 309 1 950 241 60 44 chr4 43061074 43061116 -159267231 - L1ME3A LINE L1 -397 5773 5733 356 172 94 0 chr4 43061119 43061183 -159267164 - L1ME3A LINE L1 -485 5685 5616 1510 160 119 11 chr4 43061191 43061460 -159266887 - AluJb SINE Alu -14 298 1 186 43 0 0 chr4 43061463 43061486 -159266861 + (A)n Simple_repeat Simple_repeat 1 23 0 727 128 9 0 chr4 43061492 43061601 -159266746 - FLAM_C SINE Alu -32 111 2 488 245 98 7 chr4 43061604 43061747 -159266600 - L1ME3A LINE L1 -563 5607 5452 2131 142 0 0 chr4 43061758 43062060 -159266287 - AluSx SINE Alu -10 302 1 738 185 0 22 chr4 43062063 43062198 -159266149 - FLAM_A SINE Alu -1 132 1 2244 96 0 3 chr4 43062396 43062678 -159265669 - AluSx SINE Alu -26 286 6 1560 180 24 3 chr4 43062900 43063194 -159265153 + AluSq SINE Alu 1 300 -13 42 36 0 0 chr4 43063500 43063556 -159264791 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr4 43063567 43063588 -159264759 + AT_rich Low_complexity Low_complexity 1 21 0 2302 99 13 0 chr4 43063629 43063933 -159264414 + AluSx SINE Alu 1 308 -4 214 257 0 54 chr4 43065194 43065268 -159263079 - MIR3 SINE MIR -35 173 104 2231 97 10 7 chr4 43065602 43065891 -159262456 - AluSc SINE Alu -12 297 8 1794 150 17 17 chr4 43065894 43066188 -159262159 - AluSx SINE Alu -18 294 1 254 237 195 38 chr4 43066348 43066359 -159261988 - L1MC4a LINE L1 -1636 6172 6164 2243 97 7 7 chr4 43066359 43066659 -159261688 + AluSp SINE Alu 1 300 -13 254 237 195 38 chr4 43066659 43066909 -159261438 - L1MC4a LINE L1 -1644 6164 5870 216 253 177 13 chr4 43067150 43067229 -159261118 + L2 LINE L2 3222 3313 0 1870 154 3 23 chr4 43067339 43067644 -159260703 - AluSx SINE Alu -13 299 1 2374 92 7 0 chr4 43068026 43068329 -159260018 - AluSx SINE Alu -7 305 1 2618 55 0 10 chr4 43068332 43068644 -159259703 - AluY SINE Alu -2 309 1 2262 98 0 0 chr4 43071551 43071838 -159256509 - AluSq SINE Alu -26 287 1 346 292 70 76 chr4 43071874 43071966 -159256381 - L2 LINE L2 -1 3271 3179 1607 120 113 11 chr4 43071966 43072240 -159256107 + AluSg SINE Alu 1 302 -8 346 292 70 76 chr4 43072240 43072318 -159256029 - L2 LINE L2 -93 3179 3102 1831 193 134 7 chr4 43072547 43073009 -159255338 + Charlie1b DNA MER1_type 1 521 -2 2233 134 0 6 chr4 43073182 43073496 -159254851 - AluSx SINE Alu 0 312 1 6327 105 14 2 chr4 43073520 43074384 -159253963 - THE1B-int LTR MaLR -706 874 1 2308 122 44 20 chr4 43074384 43074727 -159253620 - THE1B LTR MaLR 0 364 14 736 183 28 0 chr4 43074768 43074910 -159253437 - AluJb SINE Alu -3 309 164 770 96 128 4 chr4 43074910 43075050 -159253297 + THE1B LTR MaLR 4 182 -182 1037 124 19 12 chr4 43075052 43075213 -159253134 + AluSq SINE Alu 137 298 -15 1026 120 47 58 chr4 43075213 43075404 -159252943 + THE1B LTR MaLR 176 364 0 11138 75 1 119 chr4 43075404 43075774 -159252573 + THE1B-int LTR MaLR 1 413 -1167 839 164 127 11 chr4 43075774 43075963 -159252384 - AluSq SINE Alu -13 300 90 11138 75 1 119 chr4 43075963 43076030 -159252317 + THE1B-int LTR MaLR 413 486 -1094 2210 117 3 0 chr4 43076030 43076330 -159252017 + AluSg SINE Alu 1 301 -9 11138 75 1 119 chr4 43076330 43077495 -159250852 + THE1B-int LTR MaLR 486 1580 0 1743 118 103 63 chr4 43077496 43077589 -159250758 + THE1B LTR MaLR 2 90 -274 2226 106 13 0 chr4 43077589 43077891 -159250456 + AluSq SINE Alu 1 306 -7 1743 118 103 63 chr4 43077891 43078076 -159250271 + THE1B LTR MaLR 90 299 -65 2462 73 0 13 chr4 43078076 43078390 -159249957 - AluY SINE Alu 0 311 2 1743 118 103 63 chr4 43078390 43078459 -159249888 + THE1B LTR MaLR 299 364 0 570 248 116 10 chr4 43078459 43078657 -159249690 + Charlie2 DNA MER1_type 253 471 -2391 330 234 117 29 chr4 43079132 43079269 -159249078 + MLT1J LTR MaLR 312 460 -51 866 299 148 28 chr4 43079313 43079932 -159248415 + L2 LINE L2 2357 3050 -263 733 233 25 117 chr4 43079936 43080262 -159248085 + AluJo SINE Alu 3 298 -4 2174 91 4 0 chr4 43080274 43080548 -159247799 - AluSg SINE Alu -25 285 11 1796 172 3 7 chr4 43080648 43080945 -159247402 - AluJb SINE Alu -16 296 1 1940 130 11 28 chr4 43080948 43081262 -159247085 - AluSx SINE Alu 0 313 5 21 0 0 0 chr4 43081269 43081290 -159247057 + AT_rich Low_complexity Low_complexity 1 21 0 869 142 0 0 chr4 43081507 43081634 -159246713 - FLAM_C SINE Alu -6 127 1 2826 129 0 14 chr4 43082074 43082509 -159245838 - LTR3 LTR ERVK 0 429 1 9167 229 10 3 chr4 43082512 43084356 -159243991 - HERVK3 LTR ERVK -2 7241 5384 7890 146 5 2 chr4 43084357 43085593 -159242754 - HERVK3 LTR ERVK -2054 5189 3950 6366 138 21 4 chr4 43085591 43086590 -159241757 - HERVK3 LTR ERVK -5757 1486 471 * 721 111 238 47 chr4 43086578 43086750 -159241597 - HERVK3 LTR ERVK -6971 272 68 * 2737 133 12 12 chr4 43086767 43087196 -159241151 - LTR3 LTR ERVK 0 429 1 1725 145 41 0 chr4 43087197 43087466 -159240881 + AluJb SINE Alu 14 293 -19 1252 175 16 29 chr4 43088039 43088285 -159240062 - AluJo SINE Alu -21 291 49 2434 78 3 7 chr4 43088305 43088614 -159239733 + AluSc SINE Alu 1 308 -1 2371 97 0 3 chr4 43088657 43088966 -159239381 + AluSg SINE Alu 1 308 -2 2333 100 3 0 chr4 43090733 43091032 -159237315 - AluSp SINE Alu -13 300 1 231 36 0 0 chr4 43091084 43091112 -159237235 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 903 131 15 0 chr4 43091189 43091319 -159237028 - FLAM_C SINE Alu -11 132 1 2107 126 7 0 chr4 43091740 43092041 -159236306 + AluSq SINE Alu 1 303 -10 1918 125 39 0 chr4 43092120 43092401 -159235946 - AluSx SINE Alu -20 292 1 2233 116 3 0 chr4 43093106 43093409 -159234938 - AluSx SINE Alu -8 304 1 22 0 0 0 chr4 43093621 43093643 -159234704 + AT_rich Low_complexity Low_complexity 1 22 0 2254 106 7 7 chr4 43093734 43094037 -159234310 - AluSx SINE Alu -9 303 1 40 59 0 0 chr4 43095000 43095068 -159233279 + AT_rich Low_complexity Low_complexity 1 68 0 263 255 128 28 chr4 43095508 43095649 -159232698 + MLT1K LTR MaLR 418 572 -16 2314 99 3 7 chr4 43095885 43096187 -159232160 - AluSx SINE Alu -11 301 1 2355 97 0 0 chr4 43096420 43096718 -159231629 - AluSq SINE Alu -15 298 1 878 128 15 0 chr4 43097015 43097148 -159231199 + AluSq/x SINE Alu 1 135 -178 2095 142 0 0 chr4 43097148 43097450 -159230897 + AluSx SINE Alu 1 302 -10 201 74 0 0 chr4 43097471 43097498 -159230849 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr4 43097518 43097539 -159230808 + AT_rich Low_complexity Low_complexity 1 21 0 543 148 28 9 chr4 43097541 43097649 -159230698 - L1MA8 LINE L1 -2 6289 6180 2473 88 0 0 chr4 43097653 43097958 -159230389 - AluSq SINE Alu -8 305 1 2019 132 3 3 chr4 43098059 43098355 -159229992 - AluSx SINE Alu -16 296 1 1133 149 55 10 chr4 43098798 43098999 -159229348 + AluJo SINE Alu 87 296 -16 1164 166 35 44 chr4 43099607 43099836 -159228511 - AluJo SINE Alu -9 303 77 2255 105 10 0 chr4 43099838 43100134 -159228213 - AluSx SINE Alu -13 299 1 325 164 27 55 chr4 43100134 43100207 -159228140 - AluJo SINE Alu -155 147 77 250 276 0 0 chr4 43100916 43100974 -159227373 + L2 LINE L2 3251 3308 -5 846 137 0 0 chr4 43101028 43101145 -159227202 + AluJb SINE Alu 1 117 -195 226 277 20 50 chr4 43101145 43101246 -159227101 + MER61E LTR ERV1 2 99 -470 505 138 25 0 chr4 43101284 43101364 -159226983 + LTR25 LTR ERV1 282 363 -431 2239 106 10 3 chr4 43101528 43101830 -159226517 - AluSg SINE Alu -6 304 1 1072 160 73 18 chr4 43101831 43102050 -159226297 + MER61E LTR ERV1 339 569 0 1112 171 0 0 chr4 43102054 43102241 -159226106 + AluSg/x SINE Alu 124 310 0 1954 142 0 16 chr4 43102657 43102960 -159225387 + AluJb SINE Alu 1 298 -14 628 305 93 21 chr4 43103004 43103338 -159225009 + L2 LINE L2 2344 2701 -613 1443 150 35 0 chr4 43103361 43103588 -159224759 - MER46A DNA MER2_type 0 236 2 23 0 0 0 chr4 43103592 43103615 -159224732 + AT_rich Low_complexity Low_complexity 1 23 0 698 136 0 19 chr4 43103621 43103724 -159224623 + AluJ/FLAM SINE Alu 2 102 -210 470 215 0 43 chr4 43103722 43103815 -159224532 - AluJ/FLAM SINE Alu -222 90 2 * 1824 135 7 51 chr4 43103940 43104236 -159224111 + AluSx SINE Alu 2 284 -28 1782 157 0 11 chr4 43104393 43104680 -159223667 + AluJo SINE Alu 1 284 -28 252 0 0 0 chr4 43104684 43104712 -159223635 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1708 171 0 57 chr4 43104792 43105108 -159223239 - AluJb SINE Alu -14 298 1 825 184 0 0 chr4 43105108 43105244 -159223103 - AluJo SINE Alu -175 137 2 2354 92 0 3 chr4 43105359 43105663 -159222684 - AluSq SINE Alu -10 303 1 376 279 19 65 chr4 43105687 43105841 -159222506 + MER5A DNA MER1_type 21 167 -22 233 163 20 0 chr4 43106169 43106218 -159222129 + CT-rich Low_complexity Low_complexity 2 51 0 823 139 0 0 chr4 43106218 43106347 -159222000 - AluSc SINE Alu 0 309 181 1104 152 157 5 chr4 43106661 43106865 -159221482 + MER46A DNA MER2_type 1 235 -1 1591 241 194 74 chr4 43106999 43107231 -159221116 - L2 LINE L2 -244 3069 2866 1864 170 0 20 chr4 43107231 43107537 -159220810 + AluJb SINE Alu 1 300 -12 1591 241 194 74 chr4 43107537 43107634 -159220713 - L2 LINE L2 -447 2866 2782 1773 157 25 0 chr4 43107634 43107920 -159220427 - AluJb SINE Alu -17 295 3 1591 241 194 74 chr4 43107920 43108024 -159220323 - L2 LINE L2 -531 2782 2692 2474 125 28 19 chr4 43108024 43108385 -159219962 + THE1B LTR MaLR 1 364 0 1591 241 194 74 chr4 43108385 43108834 -159219513 - L2 LINE L2 -621 2692 2076 2264 120 0 13 chr4 43108852 43108988 -159219359 + AluSx SINE Alu 1 137 -175 2407 93 0 0 chr4 43108988 43109288 -159219059 + AluSc SINE Alu 1 300 -9 2264 120 0 13 chr4 43109288 43109467 -159218880 + AluSx SINE Alu 137 312 0 1914 149 10 13 chr4 43109623 43109758 -159218589 + AluJb SINE Alu 1 135 -177 2457 80 7 0 chr4 43109758 43110059 -159218288 + AluSq SINE Alu 1 303 -10 1914 149 10 13 chr4 43110059 43110232 -159218115 + AluJb SINE Alu 135 308 -4 2298 107 0 3 chr4 43110297 43110597 -159217750 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr4 43110931 43110954 -159217393 + AT_rich Low_complexity Low_complexity 1 23 0 370 225 28 0 chr4 43111816 43111887 -159216460 + MER34C LTR ERV1 23 95 -490 1224 136 0 0 chr4 43111891 43112068 -159216279 + AluSg/x SINE Alu 134 310 0 1156 239 54 36 chr4 43112070 43112456 -159215891 + MER34B LTR ERV1 39 493 -72 2152 116 13 0 chr4 43112456 43112759 -159215588 - AluSx SINE Alu -4 308 2 1156 239 54 36 chr4 43112759 43112834 -159215513 + MER34B LTR ERV1 493 565 0 327 261 35 17 chr4 43112841 43112956 -159215391 + L1ME LINE L1 5689 5805 -316 1113 141 0 0 chr4 43112967 43113123 -159215224 - FRAM SINE Alu -21 155 1 1768 152 3 40 chr4 43113597 43113919 -159214428 + AluJb SINE Alu 1 310 -2 1917 151 0 10 chr4 43114101 43114406 -159213941 - AluJb SINE Alu -10 302 1 287 75 25 0 chr4 43114534 43114574 -159213773 - Alu SINE Alu -262 41 1 2336 96 3 0 chr4 43114786 43115088 -159213259 + AluSp SINE Alu 1 303 -10 1699 107 3 136 chr4 43115095 43115449 -159212898 + AluJb SINE Alu 2 308 -4 31 0 0 0 chr4 43116011 43116042 -159212305 + AT_rich Low_complexity Low_complexity 1 31 0 2329 101 0 16 chr4 43116132 43116439 -159211908 + AluSg SINE Alu 1 302 -8 1472 192 23 20 chr4 43116477 43116779 -159211568 + AluJb SINE Alu 1 303 -9 2248 114 3 3 chr4 43117090 43117397 -159210950 - AluSx SINE Alu -5 307 1 1925 170 0 3 chr4 43117519 43117831 -159210516 - AluJo SINE Alu -1 311 1 2204 98 14 3 chr4 43117949 43118244 -159210103 - AluSx SINE Alu -14 298 1 868 196 6 12 chr4 43118645 43118808 -159209539 + AluJb SINE Alu 136 297 -15 2170 125 3 0 chr4 43119231 43119526 -159208821 + AluSx SINE Alu 1 296 -16 2394 85 3 16 chr4 43119946 43120262 -159208085 + AluSx SINE Alu 1 312 0 372 119 0 0 chr4 43120262 43120321 -159208026 + (TA)n Simple_repeat Simple_repeat 1 59 0 192 319 59 76 chr4 43120465 43120584 -159207763 + L2 LINE L2 2870 2986 -327 2194 128 0 3 chr4 43120769 43121067 -159207280 + AluSx SINE Alu 1 297 -15 1883 144 7 33 chr4 43121070 43121376 -159206971 + AluJo SINE Alu 1 298 -14 765 120 34 34 chr4 43121464 43121581 -159206766 + FLAM_C SINE Alu 2 118 -25 25 0 0 0 chr4 43121585 43121610 -159206737 + AT_rich Low_complexity Low_complexity 1 25 0 1537 126 157 8 chr4 43121622 43121883 -159206464 + AluJb SINE Alu 3 302 -10 185 0 0 39 chr4 43121918 43121944 -159206403 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 978 138 0 13 chr4 43121959 43122111 -159206236 - AluJb SINE Alu -162 150 1 305 322 120 11 chr4 43122243 43122426 -159205921 - MIR SINE MIR 0 262 60 184 326 0 0 chr4 43122632 43122678 -159205669 + L2 LINE L2 3005 3050 -263 908 217 31 125 chr4 43122682 43123009 -159205338 + AluSq SINE Alu 3 298 -5 1953 150 10 0 chr4 43123115 43123421 -159204926 - AluSq SINE Alu -4 309 1 1798 152 3 40 chr4 43123422 43123725 -159204622 - AluJb SINE Alu -18 294 3 276 220 0 0 chr4 43123927 43123977 -159204370 - L2 LINE L2 -48 3265 3216 2356 119 0 0 chr4 43124529 43124863 -159203484 + AluSx SINE Alu 1 334 0 527 295 33 37 chr4 43124945 43125189 -159203158 + AluJb SINE Alu 70 312 0 21 0 0 0 chr4 43125229 43125250 -159203097 + AT_rich Low_complexity Low_complexity 1 21 0 441 0 0 0 chr4 43125515 43125564 -159202783 + (A)n Simple_repeat Simple_repeat 1 49 0 1900 183 0 0 chr4 43125572 43125884 -159202463 + AluJo SINE Alu 1 312 0 2354 78 0 0 chr4 43126340 43126655 -159201692 - AluSp SINE Alu 0 315 1 311 238 0 0 chr4 43126911 43126974 -159201373 - MLT-int LTR MaLR -993 742 680 3151 189 38 31 chr4 43127116 43127821 -159200526 - MLT1A2-int LTR MaLR -656 715 6 1616 214 55 28 chr4 43127826 43128190 -159200157 - MLT1A2 LTR MaLR 0 374 1 2477 62 3 3 chr4 43128273 43128578 -159199769 + AluY SINE Alu 1 305 -6 235 221 156 0 chr4 43128597 43128674 -159199673 + MLT1G3 LTR MaLR 11 99 -496 629 241 130 6 chr4 43128674 43128836 -159199511 + FRAM SINE Alu 1 176 0 925 273 106 16 chr4 43128855 43129299 -159199048 + MLT1G3 LTR MaLR 25 595 0 862 139 0 29 chr4 43129316 43129453 -159198894 + FLAM_C SINE Alu 1 133 0 40 37 0 0 chr4 43129860 43129914 -159198433 + AT_rich Low_complexity Low_complexity 1 54 0 2094 146 0 0 chr4 43130148 43130443 -159197904 - AluSx SINE Alu -17 295 1 1351 87 12 6 chr4 43130817 43130989 -159197358 + AluSg SINE Alu 1 173 -137 2278 116 0 0 chr4 43131223 43131526 -159196821 + AluSx SINE Alu 1 303 -9 2038 110 3 13 chr4 43131751 43132052 -159196295 + AluY SINE Alu 1 298 -13 1213 142 0 0 chr4 43132292 43132461 -159195886 - AluSx SINE Alu -143 169 1 335 236 0 45 chr4 43133197 43133286 -159195061 + L1MEc LINE L1 374 458 -6263 296 104 0 0 chr4 43133292 43133340 -159195007 - Alu SINE Alu -3 297 250 384 200 42 152 chr4 43133472 43133557 -159194790 - Charlie1a DNA MER1_type -2606 155 95 2214 116 0 0 chr4 43133557 43133858 -159194489 + AluY SINE Alu 1 301 -10 384 200 42 152 chr4 43133858 43133937 -159194410 - Charlie1a DNA MER1_type -2666 95 9 421 205 115 33 chr4 43133937 43134059 -159194288 + L2 LINE L2 3174 3305 -8 250 225 92 50 chr4 43134233 43134353 -159193994 - L1MC4a LINE L1 -1785 6023 5899 1035 192 10 10 chr4 43134416 43134614 -159193733 - AluJo SINE Alu -7 305 108 1305 91 0 34 chr4 43134622 43134797 -159193550 + AluSc SINE Alu 1 169 -140 1884 184 7 0 chr4 43134994 43135299 -159193048 + AluJo SINE Alu 1 307 -5 1584 136 78 61 chr4 43135315 43135609 -159192738 + AluJo SINE Alu 1 299 -13 518 209 28 11 chr4 43135770 43135947 -159192400 + (TA)n Simple_repeat Simple_repeat 1 180 0 745 152 29 0 chr4 43135982 43136153 -159192194 + (TA)n Simple_repeat Simple_repeat 1 176 0 1025 85 0 0 chr4 43136153 43136283 -159192064 - AluSg/x SINE Alu -20 292 163 4967 153 64 73 chr4 43136426 43136717 -159191630 + L1MEc LINE L1 1040 1332 -5208 1923 132 21 7 chr4 43136717 43137035 -159191312 + AluSx SINE Alu 1 312 0 4967 153 64 73 chr4 43137035 43137661 -159190686 + L1MEc LINE L1 1332 2013 -4527 531 43 0 14 chr4 43137661 43137730 -159190617 + AluSp/q SINE Alu 229 296 -17 4967 153 64 73 chr4 43137730 43137983 -159190364 + L1MEc LINE L1 2013 2267 -4273 628 189 78 5 chr4 43138002 43138205 -159190142 + L1MD2 LINE L1 6077 6347 -12 1856 140 8 0 chr4 43138205 43138470 -159189877 + AluSx SINE Alu 24 290 -22 628 189 78 5 chr4 43138470 43138482 -159189865 + L1MD2 LINE L1 6347 6357 -2 1673 95 14 5 chr4 43138495 43138716 -159189631 + AluSg SINE Alu 1 223 -87 222 118 0 0 chr4 43138826 43138860 -159189487 + (A)n Simple_repeat Simple_repeat 1 34 0 2102 111 38 0 chr4 43139050 43139338 -159189009 - AluSx SINE Alu -13 299 1 1899 124 48 96 chr4 43139542 43139896 -159188451 + MER1B DNA MER1_type 1 337 0 272 198 148 15 chr4 43140021 43140106 -159188241 - MIR SINE MIR -73 135 42 2264 136 19 11 chr4 43140538 43140898 -159187449 - MLT1A1 LTR MaLR 0 365 3 223 303 76 50 chr4 43141063 43141182 -159187165 + MIR SINE MIR 92 213 -49 869 134 0 8 chr4 43141317 43141444 -159186903 + MER30 DNA MER1_type 105 230 0 398 111 0 97 chr4 43141445 43141517 -159186830 - L1MDa LINE L1 -6182 358 294 2049 107 42 3 chr4 43141517 43141806 -159186541 + AluJo SINE Alu 1 300 -12 1421 211 3 17 chr4 43141828 43142117 -159186230 - L1MDa LINE L1 -6239 301 17 2154 104 47 0 chr4 43142137 43142435 -159185912 - AluSq SINE Alu -1 312 1 763 268 33 0 chr4 43142435 43142618 -159185729 - MIR SINE MIR -62 200 12 270 279 93 39 chr4 43142710 43142839 -159185508 - L2 LINE L2 -14 3299 3164 1172 183 0 23 chr4 43142948 43143167 -159185180 - AluJo SINE Alu -12 300 87 287 326 28 42 chr4 43143169 43143313 -159185034 - L2 LINE L2 -240 3032 2891 2218 104 6 31 chr4 43143504 43143822 -159184525 - AluSx SINE Alu -2 310 1 191 88 29 0 chr4 43144013 43144047 -159184300 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 350 293 140 39 chr4 43144084 43144313 -159184034 + MIR SINE MIR 8 259 -3 502 286 83 46 chr4 43144466 43144707 -159183640 - MLT1L LTR MaLR -361 254 5 299 337 151 29 chr4 43144717 43144968 -159183379 + L2 LINE L2 2335 2619 -695 634 240 89 0 chr4 43144968 43145114 -159183233 - MER5A DNA MER1_type 0 189 31 288 130 0 37 chr4 43145355 43145409 -159182938 - L1MB7 LINE L1 -10 6174 6123 2762 127 51 45 chr4 43145443 43145514 -159182833 - L1MB8 LINE L1 -1 6177 6108 2231 123 0 0 chr4 43145514 43145816 -159182531 + AluSx SINE Alu 1 302 -10 2762 127 51 45 chr4 43145816 43146233 -159182114 - L1MB8 LINE L1 -70 6108 5686 1061 179 24 63 chr4 43146268 43146520 -159181827 - AluJo SINE Alu -70 242 1 245 178 0 22 chr4 43146532 43146577 -159181770 + Alu SINE Alu 124 167 -135 2118 81 0 15 chr4 43147552 43147825 -159180522 + AluSg1 SINE Alu 39 307 -2 322 113 42 69 chr4 43148295 43148879 -159179468 + (TATAA)n Simple_repeat Simple_repeat 1 568 0 410 179 24 0 chr4 43148882 43149050 -159179297 + (TA)n Simple_repeat Simple_repeat 1 172 0 858 151 18 48 chr4 43149050 43149216 -159179131 - FRAM SINE Alu -17 159 1 881 152 15 15 chr4 43149233 43149365 -159178982 + FLAM_C SINE Alu 2 133 0 2324 53 7 23 chr4 43149375 43149678 -159178669 + AluY SINE Alu 5 302 -9 1354 40 0 0 chr4 43149793 43149945 -159178402 - AluY SINE Alu -159 152 1 1650 192 21 14 chr4 43149945 43150236 -159178111 - AluJo SINE Alu -13 299 7 824 170 69 0 chr4 43150288 43150447 -159177900 + FRAM SINE Alu 1 166 -10 1467 207 135 34 chr4 43150461 43150906 -159177441 + MLT1F LTR MaLR 3 492 -50 2248 97 13 3 chr4 43150931 43151241 -159177106 - AluSp SINE Alu 0 313 1 2256 87 24 0 chr4 43151242 43151531 -159176816 - AluSx SINE Alu -16 296 1 207 296 0 0 chr4 43151611 43151665 -159176682 + L2 LINE L2 3255 3308 -5 345 247 59 41 chr4 43151728 43151898 -159176449 + L1ME4a LINE L1 5256 5428 -2380 21 36 0 0 chr4 43151928 43151956 -159176391 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr4 43152092 43152115 -159176232 + (A)n Simple_repeat Simple_repeat 1 23 0 413 250 8 45 chr4 43152115 43152232 -159176115 + L1MC5 LINE L1 7769 7882 -79 2226 108 3 3 chr4 43152232 43152528 -159175819 - AluSq SINE Alu -17 296 1 413 250 8 45 chr4 43152528 43152542 -159175805 + L1MC5 LINE L1 7882 7895 -66 960 118 0 15 chr4 43153006 43153141 -159175206 - FLAM_C SINE Alu 0 133 1 671 145 17 8 chr4 43153144 43153261 -159175086 + L1MD3 LINE L1 7878 7995 0 1895 123 31 14 chr4 43153304 43153596 -159174751 + L1MC1 LINE L1 6020 6316 -17 272 264 151 0 chr4 43153639 43153745 -159174602 + L1MC5 LINE L1 7810 7931 -30 2105 131 3 0 chr4 43154035 43154341 -159174006 - AluSx SINE Alu -5 307 1 258 105 0 0 chr4 43154548 43154586 -159173761 + (A)n Simple_repeat Simple_repeat 1 38 0 680 163 32 16 chr4 43155349 43155472 -159172875 - FLAM_C SINE Alu -6 127 3 461 83 17 0 chr4 43155852 43155912 -159172435 + U7 snRNA snRNA 2 62 -1 777 263 145 34 chr4 43156265 43156522 -159171825 + L1ME4a LINE L1 5525 5752 -369 1694 167 43 7 chr4 43156522 43156821 -159171526 - AluJb SINE Alu -2 310 1 777 263 145 34 chr4 43156821 43156913 -159171434 + L1ME4a LINE L1 5752 5832 -289 2536 62 3 0 chr4 43156913 43157221 -159171126 - AluY SINE Alu -2 309 1 777 263 145 34 chr4 43157221 43157232 -159171115 + L1ME4a LINE L1 5832 5840 -281 2249 111 3 0 chr4 43157232 43157539 -159170808 - AluSx SINE Alu -4 308 1 777 263 145 34 chr4 43157539 43157713 -159170634 + L1ME4a LINE L1 5840 6121 0 629 244 202 50 chr4 43157753 43158130 -159170217 + L1MC5 LINE L1 7452 7885 -76 2188 118 0 7 chr4 43158417 43158721 -159169626 + AluSx SINE Alu 1 302 -10 191 250 56 14 chr4 43159151 43159223 -159169124 - MIR SINE MIR -122 140 66 2263 99 27 0 chr4 43159381 43159674 -159168673 + AluSx SINE Alu 1 301 -11 2165 124 0 40 chr4 43159764 43160087 -159168260 + AluSg SINE Alu 1 310 0 2184 89 17 14 chr4 43160234 43160526 -159167821 + AluSp SINE Alu 6 298 -15 2309 97 0 0 chr4 43160617 43160917 -159167430 + AluSx SINE Alu 1 300 -12 1153 193 36 5 chr4 43161084 43161377 -159166970 + MER2 DNA MER2_type 1 345 0 2037 114 7 33 chr4 43161664 43161963 -159166384 - AluSx SINE Alu -21 291 1 1552 180 14 17 chr4 43162019 43162313 -159166034 + AluJo SINE Alu 11 303 -9 231 36 0 0 chr4 43162314 43162342 -159166005 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 764 164 8 0 chr4 43162365 43162487 -159165860 - FLAM_C SINE Alu -7 136 14 6367 37 0 0 chr4 43162768 43163526 -159164821 + L1P LINE L1 3257 4014 -2132 1785 194 7 0 chr4 43163679 43163978 -159164369 - AluJo SINE Alu -11 301 1 22 35 0 0 chr4 43163991 43164020 -159164327 + AT_rich Low_complexity Low_complexity 1 29 0 594 217 72 14 chr4 43164036 43164174 -159164173 + LTR8 LTR ERV1 1 146 -545 1737 223 35 50 chr4 43164567 43165135 -159163212 + MER57-int LTR ERV1 2120 2779 -3552 829 181 0 8 chr4 43165138 43165265 -159163082 + FLAM_C SINE Alu 2 127 -16 897 214 5 16 chr4 43165281 43165473 -159162874 + MER57-int LTR ERV1 2768 2957 -3374 643 173 50 148 chr4 43165375 43165652 -159162695 + LTR57-int LTR ERVL 792 1041 -4302 * 871 148 54 0 chr4 43165511 43165660 -159162687 + MER57-int LTR ERV1 2951 3107 -3224 678 152 0 0 chr4 43165683 43165788 -159162559 - FLAM_C SINE Alu -3 140 36 779 173 12 30 chr4 43165789 43165957 -159162390 + MER57-int LTR ERV1 3093 3257 -3074 278 234 26 0 chr4 43165938 43166015 -159162332 + MER57-int LTR ERV1 3480 3558 -2705 * 2277 115 0 10 chr4 43166030 43166342 -159162005 - AluSx SINE Alu -3 309 1 249 208 0 0 chr4 43166491 43166544 -159161803 + L1MC5 LINE L1 7609 7661 -300 1143 149 0 0 chr4 43166575 43166743 -159161604 - AluSg/x SINE Alu -11 299 132 1999 117 19 29 chr4 43166744 43167089 -159161258 - AluSx SINE Alu 0 312 1 322 241 0 25 chr4 43167091 43167170 -159161177 + MER57-int LTR ERV1 6921 6997 -540 1030 147 31 127 chr4 43167199 43167378 -159160969 + LTR54 LTR ERV1 107 302 -208 2483 71 3 0 chr4 43167378 43167686 -159160661 - AluY SINE Alu -2 309 1 1030 147 31 127 chr4 43167686 43167848 -159160499 + LTR54 LTR ERV1 302 478 -32 1352 196 0 61 chr4 43167848 43168174 -159160173 - AluJo SINE Alu -6 306 1 1030 147 31 127 chr4 43168174 43168230 -159160117 + LTR54 LTR ERV1 478 538 28 1782 163 0 17 chr4 43168230 43168524 -159159823 - AluJb SINE Alu -23 289 1 1830 180 0 0 chr4 43168524 43168819 -159159528 - AluJb SINE Alu -17 295 1 1030 147 31 127 chr4 43168819 43168886 -159159461 + LTR54 LTR ERV1 437 509 -1 2153 113 7 10 chr4 43169696 43169998 -159158349 - AluSx SINE Alu -11 301 1 1271 122 0 11 chr4 43170022 43170202 -159158145 - AluSp SINE Alu -12 301 124 1230 167 83 26 chr4 43170413 43170641 -159157706 - AluJb SINE Alu -67 245 5 298 235 0 12 chr4 43170662 43170743 -159157604 - L1ME LINE L1 -345 5776 5697 2373 96 0 0 chr4 43170829 43171122 -159157225 - AluSx SINE Alu -19 293 1 32 0 0 0 chr4 43171219 43171251 -159157096 + AT_rich Low_complexity Low_complexity 1 32 0 1560 161 64 4 chr4 43171291 43171306 -159157041 - AluJb SINE Alu -15 297 284 468 0 0 0 chr4 43171306 43171358 -159156989 + (TG)n Simple_repeat Simple_repeat 1 52 0 1560 161 64 4 chr4 43171358 43171622 -159156725 - AluJb SINE Alu -28 284 1 2339 75 31 0 chr4 43171633 43171925 -159156422 - AluSc SINE Alu -8 301 1 27 49 0 0 chr4 43172003 43172044 -159156303 + AT_rich Low_complexity Low_complexity 1 41 0 2535 60 0 3 chr4 43172456 43172757 -159155590 - AluY SINE Alu -11 300 1 2131 112 25 0 chr4 43172787 43173073 -159155274 - AluSx SINE Alu -15 297 5 2259 101 6 22 chr4 43173236 43173554 -159154793 - AluSq SINE Alu 0 313 1 1455 177 30 39 chr4 43173709 43174014 -159154333 - AluJo SINE Alu -9 303 2 2220 91 0 33 chr4 43174290 43174597 -159153750 - AluSx SINE Alu -15 297 1 865 173 0 0 chr4 43174652 43174785 -159153562 - FLAM_C SINE Alu 0 133 1 2461 77 0 6 chr4 43174786 43175097 -159153250 - AluY SINE Alu -2 309 1 1733 176 11 3 chr4 43175103 43175387 -159152960 - AluJb SINE Alu -17 295 10 1818 146 3 43 chr4 43175574 43175875 -159152472 - AluJo SINE Alu -23 289 1 2019 95 0 0 chr4 43175906 43176192 -159152155 - AluY SINE Alu 0 305 20 325 149 16 174 chr4 43176255 43176301 -159152046 - LTR37B LTR ERV1 -168 300 283 2589 42 7 0 chr4 43176301 43176607 -159151740 - AluY SINE Alu -3 308 1 325 149 16 174 chr4 43176607 43176681 -159151666 - LTR37B LTR ERV1 -185 283 199 1228 167 146 68 chr4 43176847 43177230 -159151117 + L1M4 LINE L1 4671 5083 -1063 2605 101 58 5 chr4 43177235 43177612 -159150735 - L1PA13 LINE L1 -1 6162 5766 416 188 0 0 chr4 43177622 43177702 -159150645 - AluJb SINE Alu -5 307 228 1041 139 0 0 chr4 43177714 43177858 -159150489 - AluJb SINE Alu -167 145 2 189 0 0 0 chr4 43177858 43177879 -159150468 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 951 184 0 0 chr4 43177882 43178034 -159150313 - AluJb SINE Alu -32 280 129 764 153 0 0 chr4 43178186 43178297 -159150050 - AluSq/x SINE Alu -202 111 1 1563 178 135 131 chr4 43178297 43178399 -159149948 + MLT2B1 LTR ERVL 5 105 -415 1570 173 25 11 chr4 43178399 43178677 -159149670 + AluJo SINE Alu 1 282 -30 269 26 26 0 chr4 43178682 43178720 -159149627 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2136 103 3 0 chr4 43178724 43179006 -159149341 + AluSg SINE Alu 1 283 -27 1563 178 135 131 chr4 43179006 43179404 -159148943 + MLT2B1 LTR ERVL 110 518 -2 2226 104 0 7 chr4 43179888 43180186 -159148161 - AluSx SINE Alu -16 296 1 1742 178 14 3 chr4 43180249 43180542 -159147805 - AluJo SINE Alu -16 296 1 2049 88 4 11 chr4 43180735 43181007 -159147340 + AluSq SINE Alu 13 282 -31 236 71 48 0 chr4 43181011 43181053 -159147294 + A-rich Low_complexity Low_complexity 2 45 0 2371 80 0 7 chr4 43181326 43181626 -159146721 + AluY SINE Alu 1 298 -13 2445 71 0 0 chr4 43181951 43182246 -159146101 + AluY SINE Alu 1 295 -16 186 133 0 0 chr4 43182439 43182469 -159145878 + (TC)n Simple_repeat Simple_repeat 2 31 0 955 70 0 0 chr4 43182755 43182870 -159145477 + AluSq/x SINE Alu 1 115 -198 1754 110 4 49 chr4 43182871 43183134 -159145213 + MER1B DNA MER1_type 129 339 0 187 267 0 0 chr4 43183164 43183209 -159145138 + L2 LINE L2 3203 3247 -25 2021 123 31 3 chr4 43183213 43183506 -159144841 + AluSx SINE Alu 1 301 -11 2296 97 3 10 chr4 43183506 43183806 -159144541 + AluSx SINE Alu 1 298 -14 701 192 0 31 chr4 43184838 43184968 -159143379 - FLAM_C SINE Alu -4 139 14 2243 92 3 0 chr4 43185136 43185420 -159142927 - AluSg SINE Alu -25 285 1 2099 122 3 13 chr4 43185425 43185729 -159142618 - AluSx SINE Alu -11 301 1 584 171 0 0 chr4 43185760 43185848 -159142499 + FRAM SINE Alu 68 155 -21 594 346 28 15 chr4 43185863 43186187 -159142160 + L1MEc LINE L1 38 365 -6031 2100 106 0 50 chr4 43186285 43186605 -159141742 - AluSx SINE Alu -8 304 1 806 145 0 55 chr4 43186605 43186750 -159141597 - FLAM_C SINE Alu -6 137 1 649 300 32 20 chr4 43186751 43186998 -159141349 + L1M4 LINE L1 3918 4167 -1979 564 204 0 29 chr4 43187004 43187107 -159141240 - MLT2B1 LTR ERVL -206 309 210 207 0 0 0 chr4 43187114 43187137 -159141210 + (TG)n Simple_repeat Simple_repeat 1 23 0 2149 118 0 0 chr4 43187154 43187434 -159140913 - AluSx SINE Alu -32 280 1 1382 133 9 5 chr4 43187435 43187645 -159140702 - MLT2B1 LTR ERVL -309 211 1 243 400 94 0 chr4 43187665 43187900 -159140447 + L2 LINE L2 2488 2744 -570 218 319 48 122 chr4 43188005 43188275 -159140072 + L2 LINE L2 2932 3181 -91 240 111 0 0 chr4 43189002 43189038 -159139309 + (T)n Simple_repeat Simple_repeat 1 36 0 407 342 141 8 chr4 43189380 43189614 -159138733 + L3 LINE CR1 129 393 -1184 208 274 68 41 chr4 43189643 43189716 -159138631 + MIR SINE MIR 23 97 -165 1457 151 5 0 chr4 43189939 43190158 -159138189 + AluJo SINE Alu 1 220 -92 1088 191 0 5 chr4 43190158 43190209 -159138138 + AluJb SINE Alu 86 136 -176 2177 128 0 0 chr4 43190209 43190507 -159137840 + AluSq SINE Alu 1 298 -15 1088 191 0 5 chr4 43190507 43190644 -159137703 + AluJb SINE Alu 136 273 -39 188 86 29 0 chr4 43190718 43190753 -159137594 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 826 187 0 74 chr4 43190982 43191103 -159137244 + AluJo SINE Alu 2 130 -182 237 98 0 0 chr4 43191103 43191144 -159137203 + (TA)n Simple_repeat Simple_repeat 1 41 0 2023 138 3 0 chr4 43191148 43191439 -159136908 - AluSx SINE Alu -20 292 1 826 187 0 74 chr4 43191439 43191492 -159136855 + AluJo SINE Alu 133 165 -147 1539 166 0 0 chr4 43191592 43191827 -159136520 + AluJb SINE Alu 62 296 -16 2467 81 0 0 chr4 43191828 43192123 -159136224 + AluSc SINE Alu 1 295 -14 638 281 6 11 chr4 43192123 43192301 -159136046 + L1MEc LINE L1 137 313 -6083 * 677 214 29 5 chr4 43192288 43192494 -159135853 + L1MEc LINE L1 961 1171 -5225 664 184 0 0 chr4 43192505 43192619 -159135728 + FLAM_A SINE Alu 21 134 -8 312 136 0 0 chr4 43192630 43192674 -159135673 + L1MEc LINE L1 1200 1243 -5153 350 203 13 0 chr4 43192678 43192757 -159135590 + L1MA10 LINE L1 6240 6319 -15 850 163 0 15 chr4 43192937 43193072 -159135275 + FLAM_C SINE Alu 1 133 0 187 304 0 0 chr4 43193092 43193138 -159135209 - L2 LINE L2 -90 3182 3137 1827 190 64 93 chr4 43193188 43193659 -159134688 + L1MC4 LINE L1 5175 5272 -908 542 99 0 0 chr4 43193659 43193730 -159134617 + AluJ/FLAM SINE Alu 5 75 -237 1827 190 64 93 chr4 43193730 43194124 -159134223 + L1MC4 LINE L1 5272 5676 -504 * 2353 177 57 16 chr4 43193772 43194280 -159134067 + L1MB4 LINE L1 5651 6179 -1 936 139 53 91 chr4 43194289 43194433 -159133914 + L1MB8 LINE L1 5973 6108 -70 2134 119 0 13 chr4 43194433 43194744 -159133603 - AluY SINE Alu -4 307 1 936 139 53 91 chr4 43194744 43194808 -159133539 + L1MB8 LINE L1 6108 6173 -5 311 304 54 80 chr4 43194843 43195323 -159133024 - L2 LINE L2 -203 3069 2590 1812 156 14 0 chr4 43195469 43195751 -159132596 - AluJb SINE Alu -26 286 1 1245 155 14 46 chr4 43195962 43196181 -159132166 + AluJo SINE Alu 87 298 -14 26 0 0 0 chr4 43196307 43196333 -159132014 + AT_rich Low_complexity Low_complexity 1 26 0 2261 111 0 0 chr4 43196692 43196990 -159131357 + AluSx SINE Alu 1 298 -14 968 139 76 0 chr4 43196991 43197135 -159131212 + AluSg/x SINE Alu 132 286 -26 241 287 89 25 chr4 43197222 43197379 -159130968 + L1MC/D LINE L1 5713 5879 -1929 1001 163 12 0 chr4 43197716 43197876 -159130471 - AluSp SINE Alu -4 309 148 1760 175 3 16 chr4 43198065 43198368 -159129979 - AluJb SINE Alu -13 299 1 1674 121 32 12 chr4 43199376 43199624 -159128723 + AluSx SINE Alu 1 253 -59 11787 24 0 0 chr4 43199724 43201835 -159126512 + L1PA3 LINE L1 4040 6152 -3 1892 147 3 23 chr4 43201879 43202185 -159126162 - AluSx SINE Alu -12 300 1 231 227 164 27 chr4 43202236 43202346 -159126001 - L1MC4a LINE L1 -1634 6174 6050 2490 73 3 0 chr4 43202364 43202665 -159125682 - AluSp SINE Alu -11 302 1 198 204 74 0 chr4 43202808 43202862 -159125485 + MIR SINE MIR 116 173 -89 1658 186 0 0 chr4 43203082 43203346 -159125001 - AluJb SINE Alu -48 264 1 189 0 0 0 chr4 43203356 43203377 -159124970 + (T)n Simple_repeat Simple_repeat 1 21 0 1019 251 126 19 chr4 43203473 43203709 -159124638 + MER20B DNA MER1_type 170 380 -403 1746 86 0 0 chr4 43203709 43203929 -159124418 - AluSx SINE Alu -7 303 84 1019 251 126 19 chr4 43203929 43204106 -159124241 + MER20B DNA MER1_type 380 627 -156 2277 233 146 50 chr4 43204559 43205502 -159122845 - HAL1 LINE L1 -15 2492 1459 1299 237 152 45 chr4 43205504 43205912 -159122435 - L2 LINE L2 -411 2903 2413 2494 81 0 3 chr4 43205912 43206221 -159122126 + AluSc SINE Alu 1 308 -1 1299 237 152 45 chr4 43206221 43206391 -159121956 - L2 LINE L2 -901 2413 2263 576 145 0 0 chr4 43206524 43206607 -159121740 - AluSx SINE Alu -228 84 2 2486 83 0 0 chr4 43206677 43206990 -159121357 + AluSq SINE Alu 1 313 0 1158 94 0 0 chr4 43206992 43207168 -159121179 + AluSg/x SINE Alu 133 308 0 27 29 0 0 chr4 43207193 43207227 -159121120 + AT_rich Low_complexity Low_complexity 1 34 0 309 77 0 0 chr4 43207228 43207267 -159121080 + LTR23 LTR ERV1 320 358 -79 22 35 0 0 chr4 43207272 43207301 -159121046 + AT_rich Low_complexity Low_complexity 1 29 0 1935 157 3 7 chr4 43207938 43208238 -159120109 + AluJo SINE Alu 5 303 -9 1799 152 11 0 chr4 43208247 43208530 -159119817 + AluJb SINE Alu 11 296 -16 2288 103 3 0 chr4 43208581 43208882 -159119465 + AluSx SINE Alu 1 302 -10 183 42 0 0 chr4 43209146 43209170 -159119177 + (CA)n Simple_repeat Simple_repeat 2 25 0 625 258 220 32 chr4 43209226 43209722 -159118625 + L3 LINE CR1 388 976 -601 25 51 0 0 chr4 43209765 43209804 -159118543 + AT_rich Low_complexity Low_complexity 1 39 0 714 160 0 17 chr4 43209809 43209928 -159118419 - FLAM_C SINE Alu -25 118 2 248 270 0 29 chr4 43209969 43210058 -159118289 + MIR SINE MIR 38 123 -85 1165 127 0 0 chr4 43210138 43210288 -159118059 - AluJo SINE Alu -29 283 134 2366 98 3 0 chr4 43210288 43210593 -159117754 - AluSx SINE Alu -6 306 1 14224 80 8 1 chr4 43210605 43211294 -159117053 - L1PA7 LINE L1 0 6154 5472 2428 92 0 0 chr4 43211294 43211599 -159116748 - AluY SINE Alu -6 305 1 14224 80 8 1 chr4 43211599 43213589 -159114758 - L1PA7 LINE L1 -682 5472 3464 7217 137 17 30 chr4 43213589 43214856 -159113491 - L1PA7 LINE L1 -4121 2025 775 770 211 0 25 chr4 43214856 43215017 -159113330 - AluJo SINE Alu -154 158 2 2602 40 0 7 chr4 43215331 43215632 -159112715 + AluY SINE Alu 1 299 -12 2174 100 7 13 chr4 43215861 43215996 -159112351 + AluSx SINE Alu 1 135 -177 2271 90 0 32 chr4 43215996 43216358 -159111989 + AluY SINE Alu 1 311 0 2174 100 7 13 chr4 43216358 43216521 -159111826 + AluSx SINE Alu 135 297 -15 294 95 0 0 chr4 43216637 43216679 -159111668 + (TTTTC)n Simple_repeat Simple_repeat 4 45 0 1017 105 13 7 chr4 43216891 43217043 -159111304 + BC200 scRNA scRNA 6 158 -42 1988 116 7 7 chr4 43217101 43217393 -159110954 - AluSx SINE Alu -20 292 1 212 281 0 47 chr4 43217717 43217781 -159110566 - MIR3 SINE MIR -41 167 107 910 94 8 16 chr4 43218113 43218241 -159110106 - AluJb SINE Alu -185 127 1 2515 51 3 10 chr4 43218254 43218566 -159109781 - AluY SINE Alu -1 310 1 1726 99 4 4 chr4 43218612 43218867 -159109480 - AluSx SINE Alu 0 305 51 264 250 40 0 chr4 43218893 43218969 -159109378 - L2 LINE L2 0 3313 3235 391 151 32 43 chr4 43219074 43219167 -159109180 + MER5A DNA MER1_type 1 92 -97 279 0 0 0 chr4 43219186 43219217 -159109130 + (TG)n Simple_repeat Simple_repeat 1 31 0 252 0 0 0 chr4 43219216 43219244 -159109103 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 224 258 0 15 chr4 43219982 43220048 -159108299 + (CGG)n Simple_repeat Simple_repeat 2 66 0 201 23 47 47 chr4 43222109 43222152 -159106195 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 24 0 0 0 chr4 43222885 43222909 -159105438 + AT_rich Low_complexity Low_complexity 1 24 0 223 325 181 0 chr4 43223225 43223308 -159105039 - MIR SINE MIR -118 144 47 2242 121 0 13 chr4 43223491 43223806 -159104541 - AluSx SINE Alu -1 311 1 2144 135 3 0 chr4 43223952 43224299 -159104048 - AluSp SINE Alu 0 348 1 740 134 30 144 chr4 43224525 43224726 -159103621 - MER20B DNA MER1_type -2 217 40 1487 105 14 5 chr4 43224747 43224956 -159103391 - AluSg/x SINE Alu -20 292 82 1463 189 38 7 chr4 43224983 43225274 -159103073 + AluJo SINE Alu 1 300 -12 2481 67 3 0 chr4 43225312 43225612 -159102735 + AluSc SINE Alu 1 301 -8 938 161 6 6 chr4 43225854 43226015 -159102332 + AluJb SINE Alu 136 296 -16 25 31 0 0 chr4 43226019 43226051 -159102296 + AT_rich Low_complexity Low_complexity 1 32 0 1977 146 7 7 chr4 43226286 43226587 -159101760 - AluJb SINE Alu -11 301 1 2061 86 6 86 chr4 43226615 43226939 -159101408 - AluSg SINE Alu -10 300 3 2244 115 0 3 chr4 43226940 43227244 -159101103 - AluSx SINE Alu -9 303 1 954 134 34 50 chr4 43227423 43227602 -159100745 - AluSg/x SINE Alu -3 307 132 1780 120 23 78 chr4 43227602 43227764 -159100583 - AluSx SINE Alu -19 293 154 2357 77 0 17 chr4 43227764 43228061 -159100286 - AluY SINE Alu -19 292 1 1780 120 23 78 chr4 43228061 43228207 -159100140 - AluSx SINE Alu -158 154 2 1396 157 149 4 chr4 43228217 43228478 -159099869 - AluSg SINE Alu -1 299 1 1964 132 13 10 chr4 43228649 43228953 -159099394 - AluSx SINE Alu -5 307 3 1834 152 45 0 chr4 43228955 43229245 -159099102 - AluSx SINE Alu -9 303 1 1921 135 50 0 chr4 43229283 43229565 -159098782 - AluJo SINE Alu -16 296 1 2186 91 10 14 chr4 43229649 43229945 -159098402 - AluSp SINE Alu -18 295 1 303 247 227 27 chr4 43230185 43230335 -159098012 - L1ME3A LINE L1 -94 6076 5897 318 264 194 14 chr4 43230408 43230552 -159097795 - MIR3 SINE MIR -7 201 32 207 271 189 41 chr4 43230756 43230878 -159097469 + MIR SINE MIR 7 146 -116 1649 138 173 0 chr4 43231142 43231425 -159096922 + MER44D DNA MER2_type 2 603 -6 25 0 0 0 chr4 43231807 43231832 -159096515 + AT_rich Low_complexity Low_complexity 1 25 0 599 94 35 0 chr4 43231832 43231917 -159096430 - HY3 scRNA scRNA -1 100 13 225 0 0 0 chr4 43232003 43232028 -159096319 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 1521 128 67 67 chr4 43232032 43232314 -159096033 - AluJo SINE Alu -30 282 1 223 341 96 22 chr4 43232337 43232472 -159095875 - MIR SINE MIR -88 174 30 25 75 0 0 chr4 43232808 43232861 -159095486 + AT_rich Low_complexity Low_complexity 1 53 0 2574 62 0 0 chr4 43232901 43233206 -159095141 - AluY SINE Alu -5 306 2 1999 126 30 0 chr4 43233378 43233679 -159094668 - AluSg SINE Alu 0 309 1 293 247 105 53 chr4 43233698 43233821 -159094526 - L1ME LINE L1 -691 5473 5341 2148 109 7 10 chr4 43233821 43234123 -159094224 - AluSx SINE Alu -11 301 1 293 247 105 53 chr4 43234123 43234152 -159094195 - L1ME LINE L1 -823 5341 5315 288 130 0 2 chr4 43234162 43234208 -159094139 + AluSp/q SINE Alu 254 294 -9 231 143 20 0 chr4 43234246 43234295 -159094052 - Alu SINE Alu -4 295 246 707 158 26 0 chr4 43234302 43234416 -159093931 - AluSq/x SINE Alu -194 118 2 1140 147 78 4 chr4 43234509 43234741 -159093606 - L1MB3 LINE L1 0 6183 5935 1498 147 33 90 chr4 43234851 43235151 -159093196 - AluJb SINE Alu -20 292 10 303 67 93 0 chr4 43235406 43235459 -159092888 - L1MB3 LINE L1 -273 5910 5859 306 0 0 0 chr4 43235477 43235511 -159092836 + (TA)n Simple_repeat Simple_repeat 2 35 0 2136 108 3 17 chr4 43235511 43235808 -159092539 - AluSc SINE Alu -16 293 1 1443 156 3 81 chr4 43235819 43235985 -159092362 - AluJo SINE Alu -25 287 154 2573 40 3 13 chr4 43235985 43236287 -159092060 - AluY SINE Alu -12 299 1 1443 156 3 81 chr4 43236287 43236428 -159091919 - AluJo SINE Alu -158 154 4 988 104 0 15 chr4 43236434 43236569 -159091778 - AluSq/x SINE Alu -179 133 1 24 0 0 0 chr4 43236801 43236825 -159091522 + AT_rich Low_complexity Low_complexity 1 24 0 1575 184 0 36 chr4 43237204 43237508 -159090839 - AluJb SINE Alu -19 293 1 1330 206 34 17 chr4 43237546 43237675 -159090672 + AluJo SINE Alu 9 134 -178 2159 129 3 3 chr4 43237675 43237978 -159090369 + AluSx SINE Alu 1 303 -9 1330 206 34 17 chr4 43237978 43238139 -159090208 + AluJo SINE Alu 134 304 -8 2237 122 10 0 chr4 43238184 43238488 -159089859 - AluSg SINE Alu -3 307 1 4884 96 104 114 chr4 43238626 43240029 -159088318 - pTR5 LTR ERV1 0 2438 740 1679 193 7 10 chr4 43241708 43242004 -159086343 - AluJo SINE Alu -17 295 1 271 295 70 26 chr4 43242050 43242206 -159086141 - MLT1J LTR MaLR -335 176 14 187 336 43 17 chr4 43242210 43242326 -159086021 - L2 LINE L2 -644 2670 2552 1906 133 0 11 chr4 43242345 43242616 -159085731 - AluJo SINE Alu -44 268 1 1394 178 34 41 chr4 43242766 43243059 -159085288 + AluJb SINE Alu 1 291 -21 547 227 44 46 chr4 43243237 43243455 -159084892 - L1MC5 LINE L1 -547 7495 7261 1112 205 80 8 chr4 43243503 43243742 -159084605 - MER6A DNA MER2_type -349 256 1 1886 107 40 0 chr4 43243744 43243997 -159084350 - AluSx SINE Alu -1 311 49 1666 172 17 14 chr4 43243999 43244290 -159084057 - AluJb SINE Alu -8 304 13 2314 107 0 0 chr4 43244317 43244627 -159083720 - AluY SINE Alu -1 310 1 2068 135 0 0 chr4 43244783 43245072 -159083275 - AluSq SINE Alu -24 289 1 1690 151 58 14 chr4 43245073 43245364 -159082983 - AluJo SINE Alu -8 304 1 263 122 0 0 chr4 43245364 43245405 -159082942 - L1MCa LINE L1 -5571 993 953 1865 139 0 60 chr4 43245518 43245834 -159082513 + AluJb SINE Alu 1 297 -15 1387 215 42 67 chr4 43245835 43246148 -159082199 - L1MCa LINE L1 -5108 937 680 1681 167 33 23 chr4 43246148 43246453 -159081894 + AluJb SINE Alu 1 308 -4 1387 215 42 67 chr4 43246453 43246777 -159081570 - L1MCa LINE L1 -5365 680 349 1365 179 0 0 chr4 43246777 43246989 -159081358 - AluJo SINE Alu -100 212 1 925 192 73 26 chr4 43246998 43247232 -159081115 - MLT1C LTR MaLR -24 443 199 828 111 0 0 chr4 43247235 43247343 -159081004 - AluSq/x SINE Alu -204 108 1 916 128 0 8 chr4 43247430 43247563 -159080784 - FLAM_C SINE Alu -6 137 6 2053 137 7 3 chr4 43247646 43247945 -159080402 - AluSx SINE Alu -12 300 1 419 144 39 19 chr4 43248267 43248371 -159079976 + HsTC2 DNA Tc2 1557 1662 -236 861 213 35 35 chr4 43248426 43248628 -159079719 - AluJb SINE Alu -29 283 82 2029 96 0 31 chr4 43248751 43249044 -159079303 - AluY SINE Alu -27 284 1 1051 90 0 0 chr4 43249044 43249178 -159079169 - AluSg1 SINE Alu -175 134 1 257 180 0 0 chr4 43249179 43249229 -159079118 + L1ME LINE L1 5631 5680 -486 1799 158 11 3 chr4 43249345 43249629 -159078718 + AluJo SINE Alu 2 287 -25 910 144 11 86 chr4 43249639 43249826 -159078521 + AluJb SINE Alu 129 301 -11 692 77 0 0 chr4 43250037 43250128 -159078219 + AluSg SINE Alu 2 92 -218 1078 88 40 0 chr4 43250128 43250276 -159078071 + AluY SINE Alu 126 279 -32 623 186 0 0 chr4 43250389 43250491 -159077856 - AluJb SINE Alu -209 103 2 1859 133 14 21 chr4 43250654 43250940 -159077407 + AluJb SINE Alu 15 298 -14 1858 151 17 3 chr4 43250940 43251232 -159077115 + AluSg SINE Alu 1 296 -14 330 278 32 8 chr4 43251390 43251516 -159076831 - AluY SINE Alu -10 291 163 1002 157 5 56 chr4 43251616 43251832 -159076515 + AluSc SINE Alu 99 303 -6 811 117 0 0 chr4 43251836 43251947 -159076400 - FLAM_C SINE Alu -32 111 1 2062 103 57 7 chr4 43252181 43252462 -159075885 - AluSx SINE Alu -17 295 1 382 146 15 7 chr4 43252824 43253023 -159075324 + AluJo SINE Alu 38 276 -26 370 234 16 0 chr4 43253025 43253149 -159075198 + (TG)n Simple_repeat Simple_repeat 1 126 0 933 165 10 72 chr4 43253319 43253398 -159074949 + AluJo SINE Alu 65 147 -165 414 0 0 0 chr4 43253398 43253444 -159074903 + (TA)n Simple_repeat Simple_repeat 1 46 0 933 165 10 72 chr4 43253444 43253558 -159074789 + AluJo SINE Alu 147 246 -66 2323 104 0 0 chr4 43253679 43253977 -159074370 - AluSg SINE Alu -12 298 1 2197 130 0 0 chr4 43254467 43254767 -159073580 + AluSx SINE Alu 1 300 -12 250 289 0 0 chr4 43254867 43254943 -159073404 - L1MB7 LINE L1 -25 6159 6084 1217 132 6 0 chr4 43254945 43255119 -159073228 - AluSq SINE Alu -138 175 1 2252 79 7 0 chr4 43255132 43255446 -159072901 - AluY SINE Alu 0 316 1 1623 121 89 39 chr4 43255727 43256008 -159072339 + AluSg SINE Alu 1 295 -15 664 196 108 39 chr4 43256023 43256227 -159072120 + MIR SINE MIR 34 251 -11 1250 117 27 0 chr4 43256547 43256761 -159071586 - AluSp SINE Alu 0 347 126 2727 42 0 3 chr4 43256761 43257073 -159071274 - AluY SINE Alu 0 311 1 2059 143 10 0 chr4 43257330 43257631 -159070716 - AluSq SINE Alu -9 304 1 1885 138 3 18 chr4 43257645 43257927 -159070420 - AluSx SINE Alu -21 291 14 21 57 0 0 chr4 43258521 43258556 -159069791 + AT_rich Low_complexity Low_complexity 1 35 0 2300 97 0 0 chr4 43259113 43259402 -159068945 - AluSg SINE Alu -19 291 3 2543 60 3 3 chr4 43259512 43259813 -159068534 - AluY SINE Alu -10 301 1 1313 201 25 36 chr4 43259832 43260111 -159068236 + AluJb SINE Alu 17 292 -20 256 353 0 0 chr4 43260173 43260258 -159068089 - L2 LINE L2 0 3272 3188 211 294 110 22 chr4 43260878 43261014 -159067333 - L2 LINE L2 -926 2388 2241 1974 141 10 7 chr4 43261031 43261328 -159067019 + AluSx SINE Alu 1 298 -14 2280 65 0 88 chr4 43261335 43261674 -159066673 + AluY SINE Alu 1 309 -2 192 200 0 0 chr4 43261697 43261737 -159066610 + GA-rich Low_complexity Low_complexity 1 40 0 473 291 7 33 chr4 43261836 43261987 -159066360 - AluJo SINE Alu -41 271 125 2187 117 0 13 chr4 43262144 43262453 -159065894 - AluSg SINE Alu -5 305 1 308 147 167 20 chr4 43262485 43262587 -159065760 - HsTC2 DNA Tc2 -56 1842 1726 315 184 0 17 chr4 43262590 43262661 -159065686 + AluS SINE Alu 1 57 -244 911 107 15 0 chr4 43262852 43262983 -159065364 + BC200 scRNA scRNA 2 134 -66 1495 207 0 14 chr4 43263083 43263378 -159064969 - AluJo SINE Alu -21 291 1 275 235 108 0 chr4 43263417 43263519 -159064828 - L1MDa LINE L1 -3272 3268 3156 466 188 0 0 chr4 43263524 43263604 -159064743 - FRAM SINE Alu -50 126 47 2336 94 3 19 chr4 43263666 43263975 -159064372 + AluSx SINE Alu 1 304 -8 468 241 96 54 chr4 43263975 43264162 -159064185 - L1MDa LINE L1 -3461 3079 2876 2240 98 7 3 chr4 43264162 43264459 -159063888 - AluSp SINE Alu -15 298 1 468 241 96 54 chr4 43264459 43264532 -159063815 - L1MDa LINE L1 -3664 2876 2808 1531 159 0 23 chr4 43264534 43264709 -159063638 - AluJb SINE Alu -10 302 133 2174 101 10 7 chr4 43264709 43265007 -159063340 - AluSx SINE Alu -13 299 1 1531 159 0 23 chr4 43265007 43265095 -159063252 - AluJb SINE Alu -179 133 45 2227 125 0 0 chr4 43265107 43265411 -159062936 - AluSx SINE Alu -8 304 1 324 167 61 0 chr4 43265412 43265478 -159062869 - L1MDa LINE L1 -3927 2613 2544 2010 143 6 13 chr4 43265496 43265810 -159062537 - AluSx SINE Alu 0 312 1 2089 127 3 3 chr4 43265826 43266140 -159062207 - AluSq SINE Alu 0 314 1 344 286 261 14 chr4 43266349 43266538 -159061809 + L2 LINE L2 1299 1440 -1874 2216 110 0 13 chr4 43266538 43266838 -159061509 - AluSg SINE Alu -14 296 1 344 286 261 14 chr4 43266838 43267001 -159061346 + L2 LINE L2 1440 1738 -1576 211 291 0 0 chr4 43267002 43267057 -159061290 - MIR SINE MIR -198 64 10 1387 75 0 0 chr4 43267080 43267254 -159061093 - AluY SINE Alu -9 302 129 2250 95 3 3 chr4 43267359 43267654 -159060693 + AluY SINE Alu 1 295 -16 1327 172 82 53 chr4 43267816 43268119 -159060228 + AluJb SINE Alu 1 312 0 1144 206 81 0 chr4 43268247 43268470 -159059877 - AluJb SINE Alu -71 241 1 1647 183 67 0 chr4 43268512 43268797 -159059550 + AluJb SINE Alu 1 304 -8 1779 183 40 108 chr4 43268815 43268994 -159059353 + MSTA LTR MaLR 1 191 -237 2248 105 7 0 chr4 43268994 43269290 -159059057 + AluSp SINE Alu 1 298 -15 1852 147 39 29 chr4 43269299 43269606 -159058741 + AluSx SINE Alu 1 310 -2 1939 114 25 0 chr4 43269615 43269895 -159058452 + AluSg SINE Alu 1 287 -23 1779 183 40 108 chr4 43269895 43270149 -159058198 + MSTA LTR MaLR 207 423 -5 733 204 0 0 chr4 43270183 43270315 -159058032 + AluJo SINE Alu 3 134 -178 261 0 0 0 chr4 43270332 43270361 -159057986 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1997 104 0 24 chr4 43270365 43270652 -159057695 - AluSg1 SINE Alu -29 280 1 1859 199 0 0 chr4 43271234 43271546 -159056801 - 7SLRNA srpRNA srpRNA -8 312 1 403 254 43 7 chr4 43271591 43271725 -159056622 - L1ME3 LINE L1 -52 6110 5972 182 128 43 0 chr4 43271726 43271773 -159056574 + T-rich Low_complexity Low_complexity 2 50 0 1276 29 0 0 chr4 43271793 43271930 -159056417 - AluY SINE Alu -174 137 1 1756 95 4 4 chr4 43271976 43272231 -159056116 - AluSx SINE Alu 0 305 51 264 250 40 0 chr4 43272257 43272333 -159056014 - L2 LINE L2 0 3313 3235 391 151 32 43 chr4 43272438 43272531 -159055816 + MER5A DNA MER1_type 1 92 -97 264 30 0 0 chr4 43272550 43272583 -159055764 + (TG)n Simple_repeat Simple_repeat 1 33 0 180 0 0 0 chr4 43272582 43272602 -159055745 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 259 261 0 0 chr4 43273340 43273405 -159054942 + (CGG)n Simple_repeat Simple_repeat 2 66 0 201 23 47 47 chr4 43275466 43275509 -159052838 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 270 154 31 15 chr4 43275987 43276052 -159052295 + L1MC4a LINE L1 5871 5936 -1872 24 0 0 0 chr4 43276245 43276269 -159052078 + AT_rich Low_complexity Low_complexity 1 24 0 223 325 181 0 chr4 43276585 43276668 -159051679 - MIR SINE MIR -118 144 47 2242 121 0 13 chr4 43276851 43277166 -159051181 - AluSx SINE Alu -1 311 1 2373 103 3 0 chr4 43277317 43277627 -159050720 - AluSp SINE Alu -2 311 1 740 134 30 144 chr4 43277853 43278054 -159050293 - MER20B DNA MER1_type -2 217 40 1487 105 14 5 chr4 43278075 43278284 -159050063 - AluSg/x SINE Alu -20 292 82 899 192 44 11 chr4 43278311 43278493 -159049854 + AluJo SINE Alu 1 188 -124 1139 74 0 0 chr4 43278595 43278730 -159049617 - AluSc SINE Alu -174 135 1 209 221 162 78 chr4 43278946 43279100 -159049247 + MIR SINE MIR 96 262 0 272 321 18 37 chr4 43279147 43279256 -159049091 - MER5A DNA MER1_type -1 188 82 636 306 174 34 chr4 43279400 43280093 -159048254 - L2 LINE L2 -1 3312 2527 2309 110 3 0 chr4 43280394 43280703 -159047644 + AluSx SINE Alu 1 310 -2 248 184 0 20 chr4 43281011 43281060 -159047287 - MER44D DNA MER2_type -1 704 657 722 167 0 62 chr4 43281060 43281204 -159047143 + AluJo SINE Alu 2 136 -176 1426 102 127 36 chr4 43281216 43281491 -159046856 - MER44D DNA MER2_type -39 570 1 2198 99 7 0 chr4 43284002 43284285 -159044062 + AluSx SINE Alu 1 285 -27 249 57 0 0 chr4 43285165 43285200 -159043147 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2076 69 0 101 chr4 43285202 43285520 -159042827 - AluY SINE Alu -25 286 1 1988 138 10 7 chr4 43285527 43285824 -159042523 - AluSx SINE Alu -14 298 1 211 294 110 22 chr4 43285841 43285977 -159042370 + L2 LINE L2 2241 2388 -926 256 353 0 0 chr4 43286597 43286682 -159041665 + L2 LINE L2 3188 3272 0 1327 197 25 36 chr4 43286744 43287023 -159041324 - AluJb SINE Alu -20 292 17 1840 106 98 7 chr4 43287042 43287317 -159041030 + AluSx SINE Alu 1 300 -12 466 219 159 7 chr4 43287771 43287922 -159040425 - MIR SINE MIR -17 245 72 326 113 81 0 chr4 43287983 43288045 -159040302 + L2 LINE L2 3173 3239 -74 1896 186 0 0 chr4 43288317 43288623 -159039724 - AluSx SINE Alu -6 306 1 21 0 0 0 chr4 43288700 43288721 -159039626 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 43288887 43288909 -159039438 + AT_rich Low_complexity Low_complexity 1 22 0 2245 120 3 0 chr4 43288978 43289278 -159039069 - AluSx SINE Alu -11 301 1 265 307 47 31 chr4 43289361 43289488 -159038859 - MIR SINE MIR -114 148 20 1564 149 111 0 chr4 43289751 43290012 -159038335 - AluSg SINE Alu -12 298 9 1495 181 3 50 chr4 43290161 43290464 -159037883 + AluJb SINE Alu 1 289 -23 1152 147 6 0 chr4 43290844 43291021 -159037326 - AluSg/x SINE Alu -1 309 132 2542 59 0 3 chr4 43291022 43291326 -159037021 - AluY SINE Alu -8 303 1 2175 100 7 3 chr4 43291825 43292114 -159036233 + AluSq SINE Alu 1 290 -23 512 246 146 6 chr4 43293911 43294082 -159034265 - MIR SINE MIR -55 207 13 715 256 64 12 chr4 43294130 43294302 -159034045 - AluJo SINE Alu -5 307 127 1990 125 16 13 chr4 43294308 43294619 -159033728 - AluSx SINE Alu 0 312 1 2358 61 0 14 chr4 43294678 43294974 -159033373 - AluY SINE Alu -19 292 1 2378 84 0 0 chr4 43295086 43295384 -159032963 - AluSg SINE Alu -7 303 6 691 250 0 0 chr4 43295396 43295532 -159032815 - FLAM_C SINE Alu -6 137 2 1203 78 12 6 chr4 43296035 43296202 -159032145 + AluY SINE Alu 131 298 -13 2569 57 0 3 chr4 43296225 43296525 -159031822 + AluY SINE Alu 1 299 -12 2284 97 0 0 chr4 43296635 43296924 -159031423 + AluSg SINE Alu 3 291 -19 21 57 0 0 chr4 43297481 43297516 -159030831 + AT_rich Low_complexity Low_complexity 1 35 0 1874 154 3 17 chr4 43298099 43298392 -159029955 + AluSx SINE Alu 3 291 -21 2041 143 10 0 chr4 43298406 43298707 -159029640 + AluSq SINE Alu 1 304 -9 339 214 232 6 chr4 43298917 43298964 -159029383 - L1MC5 LINE L1 -32 7929 7894 2573 43 0 3 chr4 43298964 43299263 -159029084 + AluY SINE Alu 1 298 -13 339 214 232 6 chr4 43299263 43299383 -159028964 - L1MC5 LINE L1 -67 7894 7724 2292 81 0 3 chr4 43299560 43299894 -159028453 + AluY SINE Alu 1 333 0 34 24 0 0 chr4 43299937 43299978 -159028369 + AT_rich Low_complexity Low_complexity 1 41 0 595 179 8 49 chr4 43299978 43300101 -159028246 - FLAM_C SINE Alu -25 118 1 230 83 0 56 chr4 43300109 43300145 -159028202 + HSMAR1 DNA Mariner 1 34 -1253 21 0 0 0 chr4 43300803 43300824 -159027523 + AT_rich Low_complexity Low_complexity 1 21 0 308 333 8 60 chr4 43301101 43301218 -159027129 - L2 LINE L2 -26 3246 3136 2409 181 35 0 chr4 43302115 43302545 -159025802 - L1MB3 LINE L1 -1 6182 5738 1298 100 0 6 chr4 43302548 43302728 -159025619 - AluY SINE Alu -8 303 125 1878 89 0 0 chr4 43302736 43302972 -159025375 - AluSg/x SINE Alu -11 301 66 25 31 0 0 chr4 43303117 43303149 -159025198 + AT_rich Low_complexity Low_complexity 1 32 0 851 211 0 26 chr4 43303169 43303325 -159025022 - FRAM SINE Alu -21 155 4 903 152 0 36 chr4 43303433 43303571 -159024776 + FLAM_C SINE Alu 1 133 0 217 358 11 0 chr4 43303604 43303699 -159024648 - L3 LINE CR1 -163 1414 1319 29 47 0 0 chr4 43303724 43303767 -159024580 + AT_rich Low_complexity Low_complexity 1 43 0 1545 178 34 17 chr4 43304314 43304437 -159023910 + AluSx SINE Alu 1 120 -192 183 42 0 0 chr4 43304437 43304461 -159023886 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1545 178 34 17 chr4 43304461 43304629 -159023718 + AluSx SINE Alu 120 297 -15 2327 93 17 0 chr4 43304852 43305152 -159023195 + AluSx SINE Alu 1 305 -7 717 241 0 0 chr4 43305495 43305628 -159022719 - AluJo SINE Alu -178 134 2 1945 148 3 22 chr4 43305663 43305981 -159022366 - AluJb SINE Alu 0 312 1 772 163 0 31 chr4 43306031 43306160 -159022187 - FLAM_C SINE Alu 0 143 19 1064 175 0 10 chr4 43306260 43306454 -159021893 + AluSg/x SINE Alu 121 312 0 1194 70 16 81 chr4 43306587 43306773 -159021574 - AluY SINE Alu -11 300 127 2614 58 0 0 chr4 43306778 43307089 -159021258 - AluY SINE Alu 0 311 1 847 193 0 0 chr4 43307179 43307319 -159021028 + MER46A DNA MER2_type 2 141 -95 879 184 0 46 chr4 43307323 43307497 -159020850 + FRAM SINE Alu 1 166 0 1115 202 46 5 chr4 43307564 43307782 -159020565 + AluJb SINE Alu 5 231 -81 872 86 0 9 chr4 43308291 43308407 -159019940 + AluSq/x SINE Alu 1 115 -197 429 145 0 0 chr4 43308422 43308491 -159019856 + AluYb8 SINE Alu 229 297 -21 315 350 84 15 chr4 43308512 43308715 -159019632 - L2 LINE L2 -548 2766 2550 1641 148 19 4 chr4 43308989 43309245 -159019102 - AluJb SINE Alu -37 275 16 191 244 0 0 chr4 43309246 43309291 -159019056 + MIR SINE MIR 192 236 -26 717 255 75 19 chr4 43310690 43310902 -159017445 + MIR SINE MIR 4 227 -35 1403 152 18 0 chr4 43310902 43311119 -159017228 - AluJb SINE Alu -7 305 85 2492 93 0 0 chr4 43311467 43311780 -159016567 - AluSq SINE Alu 0 313 1 1474 267 166 13 chr4 43312233 43312850 -159015497 + L2 LINE L2 2003 2735 -579 2177 142 0 0 chr4 43312850 43313159 -159015188 + AluSx SINE Alu 2 310 -2 1474 267 166 13 chr4 43313159 43313220 -159015127 + L2 LINE L2 2735 2785 -529 2081 121 0 22 chr4 43313722 43314037 -159014310 - AluSx SINE Alu -4 308 1 623 215 144 63 chr4 43314223 43314347 -159014000 + L1ME LINE L1 5385 5498 -664 2353 98 0 16 chr4 43314347 43314664 -159013683 + AluSx SINE Alu 1 312 0 623 215 144 63 chr4 43314664 43314890 -159013457 + L1ME LINE L1 5498 5769 -393 2539 174 40 65 chr4 43315005 43315609 -159012738 - L1M3 LINE L1 -404 5779 5161 839 168 0 0 chr4 43315609 43315734 -159012613 - FLAM_A SINE Alu -4 129 5 2539 174 40 65 chr4 43315734 43315766 -159012581 - L1M3 LINE L1 -1022 5161 5130 2141 134 3 6 chr4 43315766 43316079 -159012268 - AluSx SINE Alu 0 312 1 2539 174 40 65 chr4 43316079 43316301 -159012046 - L1M3 LINE L1 -1053 5130 4941 2245 72 20 10 chr4 43316313 43316651 -159011696 - AluY SINE Alu 0 311 1 28 0 0 0 chr4 43316874 43316902 -159011445 + AT_rich Low_complexity Low_complexity 1 28 0 1987 116 0 47 chr4 43317184 43317503 -159010844 + AluSx SINE Alu 4 307 -5 801 162 0 0 chr4 43317593 43317710 -159010637 - AluJb SINE Alu -195 117 1 1065 134 35 6 chr4 43317710 43317882 -159010465 - L1M2 LINE L1 -683 5608 5432 1458 161 124 22 chr4 43317882 43318156 -159010191 - AluSx SINE Alu -6 306 5 366 161 0 0 chr4 43318167 43318223 -159010124 - MER5A DNA MER1_type 0 189 134 243 140 0 0 chr4 43318232 43318282 -159010065 + (T)n Simple_repeat Simple_repeat 1 50 0 381 170 217 19 chr4 43320718 43320824 -159007523 - MER5A DNA MER1_type -62 127 1 1700 156 22 0 chr4 43320889 43321165 -159007182 - AluSx SINE Alu -30 282 1 667 180 47 0 chr4 43321165 43321293 -159007054 + MER105 DNA DNA 70 203 -1 1868 149 0 48 chr4 43321317 43321632 -159006715 + AluJb SINE Alu 12 311 -1 2514 25 0 0 chr4 43321775 43322057 -159006290 + AluY SINE Alu 1 282 -29 198 0 0 0 chr4 43322057 43322079 -159006268 + (CTAAA)n Simple_repeat Simple_repeat 3 24 0 1766 147 3 33 chr4 43322151 43322457 -159005890 + AluSx SINE Alu 1 297 -15 2216 86 0 32 chr4 43322457 43322771 -159005576 + AluY SINE Alu 1 304 -7 298 216 159 0 chr4 43323514 43323602 -159004745 + MER58B DNA MER1_type 231 332 -9 1879 157 3 10 chr4 43323603 43323897 -159004450 + AluSx SINE Alu 1 292 -20 286 297 150 12 chr4 43323956 43324202 -159004145 + L2 LINE L2 1998 2277 -1037 26 74 0 0 chr4 43325102 43325156 -159003191 + AT_rich Low_complexity Low_complexity 1 54 0 1387 145 63 0 chr4 43326037 43326258 -159002089 + AluJb SINE Alu 73 307 -5 207 0 0 0 chr4 43329231 43329254 -158999093 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 254 211 213 43 chr4 43331242 43331386 -158996961 + MIR SINE MIR 40 204 -58 1843 132 7 7 chr4 43331829 43332102 -158996245 + AluSx SINE Alu 1 273 -39 833 190 25 12 chr4 43332342 43332505 -158995842 + FRAM SINE Alu 6 170 -6 2295 94 0 17 chr4 43332515 43332813 -158995534 + AluSg SINE Alu 3 295 -15 2042 95 20 34 chr4 43332816 43333110 -158995237 + AluSq SINE Alu 1 290 -23 1885 119 0 43 chr4 43333575 43333711 -158994636 + AluSq SINE Alu 1 120 -193 2030 118 16 39 chr4 43333711 43334016 -158994331 + AluSx SINE Alu 1 298 -14 1885 119 0 43 chr4 43334016 43334156 -158994191 + AluSq SINE Alu 120 265 -48 1789 64 14 0 chr4 43334160 43334379 -158993968 + AluSg/x SINE Alu 75 296 -16 2197 101 0 3 chr4 43334580 43334876 -158993471 + AluSx SINE Alu 1 295 -17 1689 153 3 28 chr4 43334952 43335240 -158993107 + AluJb SINE Alu 14 294 -18 1802 88 88 8 chr4 43335482 43335777 -158992570 - AluSp SINE Alu 0 316 1 307 295 127 34 chr4 43336252 43336489 -158991858 + HAL1 LINE L1 1 259 -2248 2286 47 82 0 chr4 43336573 43336852 -158991495 + AluY SINE Alu 1 302 -9 318 229 73 9 chr4 43337322 43337431 -158990916 + HAL1 LINE L1 1451 1566 -941 1082 221 47 37 chr4 43337431 43337593 -158990754 + AluJo SINE Alu 1 169 -133 194 0 39 0 chr4 43337593 43337619 -158990728 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 1082 221 47 37 chr4 43337619 43337755 -158990592 + AluJo SINE Alu 169 302 0 523 267 136 62 chr4 43337777 43338151 -158990196 + HAL1 LINE L1 1632 2033 -474 737 35 0 0 chr4 43338169 43338256 -158990091 + L1PA4 LINE L1 6066 6152 -3 2311 76 0 3 chr4 43338409 43338697 -158989650 + AluY SINE Alu 1 287 -24 422 83 14 0 chr4 43338697 43338769 -158989578 + (TA)n Simple_repeat Simple_repeat 1 73 0 953 160 64 0 chr4 43338772 43338928 -158989419 + AluJb SINE Alu 127 292 -20 728 129 60 9 chr4 43338939 43339055 -158989292 + FLAM_C SINE Alu 2 123 -20 308 141 141 39 chr4 43339074 43339152 -158989195 + L1MA9 LINE L1 6227 6312 0 613 191 17 0 chr4 43339152 43339267 -158989080 - L1MB7 LINE L1 -58 6126 6010 21 0 0 0 chr4 43339275 43339296 -158989051 + AT_rich Low_complexity Low_complexity 1 21 0 2484 54 0 7 chr4 43339464 43339760 -158988587 + AluSq SINE Alu 1 294 -19 229 260 42 0 chr4 43339768 43339864 -158988483 - L1MC4 LINE L1 -1339 6703 6604 1784 179 3 3 chr4 43339930 43340227 -158988120 + AluJb SINE Alu 1 297 -15 1432 171 9 65 chr4 43340474 43340795 -158987552 + AluJb SINE Alu 1 303 -9 243 195 0 0 chr4 43340849 43340890 -158987457 + HAL1 LINE L1 794 834 -1673 1308 153 0 26 chr4 43340915 43341144 -158987203 + AluJb SINE Alu 82 304 -8 1742 97 4 13 chr4 43341242 43341479 -158986868 + AluSg SINE Alu 1 235 -75 1383 183 18 5 chr4 43341598 43341822 -158986525 + AluSc SINE Alu 64 290 -19 1979 130 10 0 chr4 43341943 43342235 -158986112 - AluSx SINE Alu 0 312 18 664 161 0 0 chr4 43342247 43342340 -158986007 - AluS SINE Alu -213 99 7 2147 118 0 16 chr4 43342423 43342736 -158985611 - AluSc SINE Alu -1 308 1 24 0 0 0 chr4 43342736 43342760 -158985587 + AT_rich Low_complexity Low_complexity 1 24 0 2229 88 0 17 chr4 43342764 43343059 -158985288 - AluSp SINE Alu -23 290 1 1871 127 14 3 chr4 43343061 43343353 -158984994 - AluSq SINE Alu -18 295 1 2097 128 3 0 chr4 43343415 43343711 -158984636 - AluSx SINE Alu -9 303 7 2203 102 0 13 chr4 43343725 43344028 -158984319 - AluY SINE Alu -12 299 1 1701 178 40 3 chr4 43344065 43344363 -158983984 + AluJo SINE Alu 1 309 -3 361 170 28 102 chr4 43344411 43344540 -158983807 + FRAM SINE Alu 71 157 -9 1656 112 0 125 chr4 43344546 43344658 -158983689 + AluSx SINE Alu 25 149 -305 2393 94 7 0 chr4 43344658 43344967 -158983380 + AluSq SINE Alu 1 311 -2 1656 112 0 125 chr4 43344967 43345321 -158983026 + AluSx SINE Alu 149 454 0 210 71 0 0 chr4 43345321 43345349 -158982998 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 2176 83 41 10 chr4 43345360 43345650 -158982697 + AluSp SINE Alu 1 299 -14 2310 86 10 7 chr4 43345664 43345966 -158982381 + AluSq SINE Alu 7 309 -4 1218 116 29 0 chr4 43345966 43346138 -158982209 + AluSp SINE Alu 137 313 0 227 30 0 30 chr4 43346142 43346175 -158982172 + (GAAA)n Simple_repeat Simple_repeat 3 34 0 664 196 108 39 chr4 43346495 43346699 -158981648 - MIR SINE MIR -11 251 34 1787 106 89 32 chr4 43346714 43346996 -158981351 - AluSq SINE Alu -15 298 1 2301 91 7 3 chr4 43347154 43347461 -158980886 - AluY SINE Alu -3 308 1 1847 120 62 67 chr4 43347520 43347679 -158980668 + THE1C LTR MaLR 1 159 -216 2108 134 0 0 chr4 43347679 43347986 -158980361 - AluSx SINE Alu -5 307 1 1847 120 62 67 chr4 43347986 43348200 -158980147 + THE1C LTR MaLR 159 372 -3 1823 112 89 0 chr4 43348201 43348482 -158979865 + AluSx SINE Alu 4 307 0 1338 157 5 9 chr4 43348847 43349063 -158979284 - AluJb SINE Alu -11 301 87 914 199 45 15 chr4 43349190 43349390 -158978957 - AluJo SINE Alu -3 309 104 1069 85 0 0 chr4 43349390 43349519 -158978828 + AluY SINE Alu 1 129 -182 1119 63 0 0 chr4 43349632 43349759 -158978588 - AluY SINE Alu -180 131 5 369 274 82 30 chr4 43349765 43349900 -158978447 - HAL1 LINE L1 -1130 1377 1236 2362 106 0 0 chr4 43349977 43350278 -158978069 - AluSg SINE Alu -8 302 2 794 270 155 74 chr4 43350364 43350783 -158977564 - L2 LINE L2 0 3313 2930 1377 193 38 51 chr4 43350783 43351099 -158977248 + AluJo SINE Alu 1 312 0 794 270 155 74 chr4 43351099 43351281 -158977066 - L2 LINE L2 -383 2930 2764 1953 109 41 31 chr4 43351281 43351574 -158976773 + AluSx SINE Alu 1 296 -16 794 270 155 74 chr4 43351574 43351854 -158976493 - L2 LINE L2 -549 2764 2373 2346 85 6 19 chr4 43351883 43352200 -158976147 - AluSp SINE Alu 0 313 1 1826 107 11 4 chr4 43352203 43352466 -158975881 - AluSx SINE Alu -4 308 44 * 1901 135 0 0 chr4 43352465 43352732 -158975615 - AluJb SINE Alu -2 310 44 1378 169 0 58 chr4 43352949 43353063 -158975284 - AluJo SINE Alu -66 246 127 198 0 0 0 chr4 43353063 43353085 -158975262 + (TA)n Simple_repeat Simple_repeat 1 22 0 1378 169 0 58 chr4 43353085 43353231 -158975116 - AluJo SINE Alu -185 127 1 191 138 0 0 chr4 43353240 43353269 -158975078 - MIR SINE MIR -116 146 118 2476 63 3 0 chr4 43353427 43353726 -158974621 + AluY SINE Alu 1 300 -11 2240 99 17 3 chr4 43354438 43354740 -158973607 - AluSp SINE Alu -7 306 1 1755 99 91 60 chr4 43355089 43355131 -158973216 - THE1C LTR MaLR 0 375 336 1768 66 160 0 chr4 43355131 43355412 -158972935 + AluSq SINE Alu 2 321 0 1755 99 91 60 chr4 43355412 43355732 -158972615 - THE1C LTR MaLR -39 336 1 1047 173 41 10 chr4 43355970 43356167 -158972180 - AluJb SINE Alu -18 294 92 422 143 0 0 chr4 43356484 43356547 -158971800 - Alu SINE Alu -14 298 236 2205 101 0 3 chr4 43356576 43356863 -158971484 - AluSx SINE Alu -26 286 1 2228 94 7 7 chr4 43356868 43357156 -158971191 - AluSp SINE Alu -25 288 1 1714 171 10 14 chr4 43357158 43357450 -158970897 - AluSx SINE Alu -21 291 1 612 200 157 29 chr4 43357637 43357777 -158970570 + AluJb SINE Alu 134 291 -21 23 0 0 0 chr4 43358126 43358149 -158970198 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr4 43359730 43359769 -158968578 + AT_rich Low_complexity Low_complexity 1 39 0 1486 153 19 88 chr4 43360743 43361063 -158967284 - AluJo SINE Alu -13 299 2 2179 93 0 4 chr4 43361632 43361955 -158966392 - AluSc SINE Alu 0 322 1 2075 121 10 0 chr4 43362177 43362467 -158965880 - AluSg SINE Alu -17 293 1 2094 138 7 0 chr4 43364539 43364835 -158963512 + AluSg SINE Alu 1 298 -12 2414 87 0 6 chr4 43364840 43365152 -158963195 + AluY SINE Alu 1 310 -1 956 186 0 23 chr4 43365387 43365559 -158962788 - AluJo SINE Alu -46 266 99 2163 118 3 10 chr4 43365583 43365888 -158962459 - AluSx SINE Alu -9 303 1 1208 165 46 42 chr4 43366065 43366302 -158962045 + AluJo SINE Alu 51 288 -24 1819 118 20 106 chr4 43366311 43366659 -158961688 + AluYb8 SINE Alu 1 318 0 1120 92 18 0 chr4 43366660 43366824 -158961523 + HSMAR2 DNA Mariner 154 320 -982 1441 189 7 33 chr4 43366840 43367115 -158961232 - AluJb SINE Alu -32 280 13 2331 135 53 5 chr4 43367126 43367505 -158960842 + HSMAR2 DNA Mariner 318 714 -588 647 165 241 0 chr4 43367505 43367638 -158960709 + AluJb SINE Alu 134 298 -14 3816 103 31 18 chr4 43367638 43368211 -158960136 + HSMAR2 DNA Mariner 715 1295 -7 484 182 20 0 chr4 43368219 43368318 -158960029 - L1MB3 LINE L1 -85 6098 5998 394 191 138 21 chr4 43368321 43368415 -158959932 - AluJb SINE Alu -81 221 117 1646 131 120 22 chr4 43368415 43368682 -158959665 - AluSx SINE Alu -19 293 1 2238 115 0 0 chr4 43368955 43369260 -158959087 - AluSx SINE Alu -7 305 1 337 256 26 51 chr4 43369493 43369610 -158958737 - MIR SINE MIR 0 262 149 1943 101 0 89 chr4 43369874 43370201 -158958146 - AluSx SINE Alu -14 298 1 2138 97 0 72 chr4 43370248 43370569 -158957778 - AluSx SINE Alu -14 298 1 207 298 274 0 chr4 43371786 43371870 -158956477 + L2 LINE L2 3157 3263 -9 1843 164 0 3 chr4 43371877 43372164 -158956183 + AluJb SINE Alu 1 286 -26 1553 91 5 0 chr4 43372175 43372373 -158955974 + AluSp SINE Alu 1 199 -114 404 197 0 0 chr4 43372373 43372439 -158955908 + AluSp SINE Alu 231 296 -17 2160 106 3 0 chr4 43372727 43373011 -158955336 + AluSg SINE Alu 1 285 -25 283 277 39 69 chr4 43373220 43373273 -158955074 - MIR SINE MIR -78 184 131 2162 70 16 0 chr4 43373273 43373568 -158954779 + AluSg SINE Alu 23 321 0 283 277 39 69 chr4 43373568 43373643 -158954704 - MIR SINE MIR -131 131 59 180 0 0 0 chr4 43373742 43373762 -158954585 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 541 84 0 0 chr4 43373803 43373874 -158954473 + AluS SINE Alu 14 84 -229 1904 124 0 0 chr4 43373874 43374133 -158954214 - AluSx SINE Alu -53 259 1 303 134 239 30 chr4 43374133 43374200 -158954147 - AluSc SINE Alu -119 180 100 1894 138 4 7 chr4 43374216 43374492 -158953855 - AluSx SINE Alu -37 275 1 2231 102 3 0 chr4 43374589 43374874 -158953473 - AluSg SINE Alu -24 286 1 1228 138 5 0 chr4 43374951 43375139 -158953208 - AluSg/x SINE Alu -13 299 111 680 154 7 60 chr4 43376058 43376207 -158952140 + L1MA5A LINE L1 6145 6285 -12 261 0 0 0 chr4 43376347 43376376 -158951971 + (TA)n Simple_repeat Simple_repeat 1 29 0 579 179 104 60 chr4 43376381 43376515 -158951832 - FRAM SINE Alu -30 146 7 813 193 16 128 chr4 43376530 43376773 -158951574 - AluJo SINE Alu -95 217 2 1408 164 109 8 chr4 43376889 43377145 -158951202 + AluSg SINE Alu 1 282 -28 2075 121 10 0 chr4 43377422 43377712 -158950635 + AluSg SINE Alu 1 293 -17 2439 87 0 10 chr4 43377934 43378243 -158950104 + AluSq SINE Alu 1 306 -7 1579 184 42 3 chr4 43378673 43378956 -158949391 + AluSx SINE Alu 1 294 -18 198 103 0 0 chr4 43379624 43379653 -158948694 + (A)n Simple_repeat Simple_repeat 1 29 0 1917 127 10 20 chr4 43379951 43380243 -158948104 + AluSq SINE Alu 1 289 -24 31 68 0 0 chr4 43380480 43380539 -158947808 + AT_rich Low_complexity Low_complexity 1 59 0 1561 143 68 11 chr4 43381065 43381344 -158947003 + AluJb SINE Alu 1 295 -17 2044 145 0 62 chr4 43381555 43381913 -158946434 + MER1B DNA MER1_type 2 337 0 1383 175 91 29 chr4 43383647 43383729 -158944618 + AluJo SINE Alu 1 76 -236 2426 80 3 3 chr4 43383729 43384030 -158944317 + AluY SINE Alu 1 301 -10 1383 175 91 29 chr4 43384030 43384221 -158944126 + AluJo SINE Alu 76 291 -21 345 276 98 62 chr4 43384910 43385031 -158943316 - MIR SINE MIR -5 257 124 1481 200 44 0 chr4 43385031 43385326 -158943021 - AluJo SINE Alu -4 308 1 345 276 98 62 chr4 43385326 43385413 -158942934 - MIR SINE MIR -138 124 42 302 351 145 21 chr4 43386132 43386691 -158941656 + L2 LINE L2 189 816 -2498 798 181 9 126 chr4 43386726 43386941 -158941406 - AluJo SINE Alu -84 228 39 26 0 0 0 chr4 43387101 43387127 -158941220 + AT_rich Low_complexity Low_complexity 1 26 0 225 303 181 13 chr4 43387476 43387631 -158940716 + L2 LINE L2 1739 1919 -1395 218 226 226 92 chr4 43387696 43387763 -158940584 + MIR SINE MIR 71 128 -134 2196 122 0 3 chr4 43387763 43388067 -158940280 + AluSx SINE Alu 7 309 -3 218 226 226 92 chr4 43388067 43388163 -158940184 + MIR SINE MIR 128 256 -6 195 276 81 57 chr4 43388430 43388553 -158939794 + L2 LINE L2 3184 3309 -4 3915 244 85 34 chr4 43388949 43390269 -158938078 + L1M4 LINE L1 836 2087 -4557 2364 85 0 0 chr4 43390269 43390582 -158937765 + AluSx SINE Alu 1 313 0 3915 244 85 34 chr4 43390582 43390806 -158937541 + L1M4 LINE L1 2087 2298 -4346 2616 68 0 0 chr4 43390806 43391113 -158937234 + AluY SINE Alu 1 307 -4 3915 244 85 34 chr4 43391113 43391563 -158936784 + L1M4 LINE L1 2298 3059 -3585 831 114 7 57 chr4 43391565 43391705 -158936642 - FLAM_C SINE Alu 0 133 1 2464 221 111 42 chr4 43391705 43391784 -158936563 + L1M4 LINE L1 4899 4971 -1673 212 75 0 25 chr4 43391784 43391824 -158936523 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2464 221 111 42 chr4 43391824 43392363 -158935984 + L1M4 LINE L1 4971 5600 -1044 1812 112 0 4 chr4 43392363 43392605 -158935742 - AluSq SINE Alu -17 296 56 2464 221 111 42 chr4 43392605 43392876 -158935471 + L1M4 LINE L1 5600 5851 -793 251 178 41 14 chr4 43392873 43392946 -158935401 + L1MB3 LINE L1 6109 6183 0 * 748 194 22 0 chr4 43393038 43393177 -158935170 - FRAM SINE Alu -31 145 4 271 125 0 0 chr4 43393647 43393687 -158934660 + L1MA4 LINE L1 5554 5593 -575 911 159 0 0 chr4 43393687 43393825 -158934522 + FLAM_C SINE Alu 1 138 -5 2361 148 6 59 chr4 43393825 43393917 -158934430 + L1MA4 LINE L1 5585 5680 -620 1858 169 0 6 chr4 43393917 43394230 -158934117 + AluSx SINE Alu 1 311 -1 2361 148 6 59 chr4 43394230 43394523 -158933824 + L1MA4 LINE L1 5680 5987 -313 1920 148 20 7 chr4 43394523 43394827 -158933520 + AluJo SINE Alu 1 308 -4 2361 148 6 59 chr4 43394827 43394915 -158933432 + L1MA4 LINE L1 5987 6007 -293 1903 127 21 17 chr4 43394915 43395206 -158933141 + AluSg SINE Alu 2 293 -17 2361 148 6 59 chr4 43395206 43395324 -158933023 + L1MA4 LINE L1 6007 6130 -170 500 165 11 11 chr4 43395340 43395431 -158932916 - FRAM SINE Alu -23 153 63 574 164 0 0 chr4 43395431 43395535 -158932812 + L1MA4 LINE L1 6185 6288 -12 28 29 0 0 chr4 43395862 43395897 -158932450 + AT_rich Low_complexity Low_complexity 1 35 0 2288 114 0 3 chr4 43397577 43397883 -158930464 + AluSc SINE Alu 1 305 -4 274 232 49 24 chr4 43398450 43398532 -158929815 - MIR SINE MIR -2 260 177 345 311 142 16 chr4 43398635 43398944 -158929403 - L1ME LINE L1 -388 5733 5386 640 154 106 0 chr4 43399141 43399245 -158929102 + FLAM_A SINE Alu 4 118 -15 23 0 0 0 chr4 43399249 43399272 -158929075 + AT_rich Low_complexity Low_complexity 1 23 0 1462 153 110 4 chr4 43399294 43399530 -158928817 - AluSx SINE Alu -51 261 1 2279 103 0 13 chr4 43399834 43400146 -158928201 - AluSg SINE Alu -2 308 1 254 309 106 0 chr4 43400217 43400311 -158928036 + L2 LINE L2 3202 3305 -8 469 250 48 24 chr4 43400869 43401037 -158927310 - MIR SINE MIR 0 262 91 1836 123 0 85 chr4 43401140 43401458 -158926889 + AluSx SINE Alu 1 291 -21 270 0 0 0 chr4 43401463 43401493 -158926854 + (CA)n Simple_repeat Simple_repeat 2 31 0 1489 126 11 101 chr4 43401909 43402061 -158926286 - AluJo SINE Alu -43 269 152 1985 147 0 0 chr4 43402061 43402346 -158926001 - AluSx SINE Alu -27 285 1 1489 126 11 101 chr4 43402346 43402471 -158925876 - AluJo SINE Alu -160 152 17 713 198 0 0 chr4 43402907 43403023 -158925324 + FLAM_C SINE Alu 2 117 -16 1285 178 57 70 chr4 43403310 43403543 -158924804 + L1MB4 LINE L1 4697 4931 -1215 1956 155 0 7 chr4 43403543 43403853 -158924494 + AluSx SINE Alu 1 308 -4 1285 178 57 70 chr4 43403853 43404107 -158924240 + L1MB4 LINE L1 4931 5332 -814 1207 166 0 10 chr4 43404107 43404333 -158924014 + AluJb SINE Alu 86 309 0 1645 176 117 28 chr4 43404341 43405018 -158923329 + L1MB4 LINE L1 5323 6180 0 2314 97 7 7 chr4 43405409 43405719 -158922628 - AluSq SINE Alu -3 310 1 1257 112 6 0 chr4 43405886 43406056 -158922291 - AluSq SINE Alu -10 303 133 1886 115 49 7 chr4 43406095 43406382 -158921965 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr4 43406552 43406574 -158921773 + AT_rich Low_complexity Low_complexity 1 22 0 1759 200 3 3 chr4 43407475 43407780 -158920567 + AluJo SINE Alu 1 305 -7 277 346 0 0 chr4 43407819 43407900 -158920447 - L2 LINE L2 -49 3264 3184 614 312 55 9 chr4 43408630 43408848 -158919499 - MIR SINE MIR -27 235 8 248 162 44 0 chr4 43409056 43409124 -158919223 + L1ME4a LINE L1 6050 6120 -1 185 149 128 43 chr4 43409941 43409988 -158918359 + L2 LINE L2 3175 3225 -88 276 214 18 0 chr4 43410975 43411031 -158917316 + MLT1J LTR MaLR 86 142 -369 1442 158 139 8 chr4 43411352 43411618 -158916729 - AluJo SINE Alu -11 301 1 2395 79 0 7 chr4 43412037 43412340 -158916007 + AluY SINE Alu 1 301 -10 2155 108 7 0 chr4 43412469 43412765 -158915582 - AluSc SINE Alu -11 298 1 29 47 0 0 chr4 43413249 43413292 -158915055 + AT_rich Low_complexity Low_complexity 1 43 0 3821 132 38 29 chr4 43414399 43415132 -158913215 - L1MA5A LINE L1 -10 6287 5548 827 189 82 25 chr4 43415271 43415514 -158912833 - L1MB8 LINE L1 -16 6162 5906 1791 152 38 3 chr4 43415517 43415832 -158912515 + THE1B LTR MaLR 3 328 -36 277 136 0 0 chr4 43415821 43415889 -158912458 + Alu SINE Alu 250 317 0 * 505 193 181 0 chr4 43415902 43416096 -158912251 - L1MA5A LINE L1 -742 5424 5205 265 340 31 10 chr4 43416319 43416416 -158911931 - L2 LINE L2 -6 3266 3168 30 0 0 0 chr4 43416521 43416551 -158911796 + AT_rich Low_complexity Low_complexity 1 30 0 2205 96 4 0 chr4 43416924 43417204 -158911143 - AluSx SINE Alu -31 281 1 1628 197 20 0 chr4 43417354 43417653 -158910694 - AluJb SINE Alu -7 305 1 2167 105 21 0 chr4 43417664 43417950 -158910397 - AluSg SINE Alu -18 292 1 1740 142 64 10 chr4 43418703 43418999 -158909348 + AluSx SINE Alu 1 312 0 204 125 0 0 chr4 43419010 43419042 -158909305 + (GAGAA)n Simple_repeat Simple_repeat 4 35 0 1410 183 58 17 chr4 43419047 43419342 -158909005 + AluJb SINE Alu 6 312 0 1694 143 0 117 chr4 43419356 43419698 -158908649 + AluJb SINE Alu 1 302 0 5350 180 31 24 chr4 43419707 43420155 -158908192 - L1MA5A LINE L1 -1158 4988 4544 2201 108 3 0 chr4 43420155 43420450 -158907897 + AluSp SINE Alu 1 296 -17 5350 180 31 24 chr4 43420450 43421275 -158907072 - L1MA5A LINE L1 -1602 4544 3707 1125 214 57 9 chr4 43421273 43421609 -158906738 + L1MA4 LINE L1 4955 5306 -840 * 233 143 54 0 chr4 43421609 43421665 -158906682 + A-rich Low_complexity Low_complexity 5 63 0 2203 88 24 0 chr4 43421688 43421984 -158906363 + AluSc SINE Alu 1 303 -6 3285 164 95 13 chr4 43421991 43422740 -158905607 + L1MA4 LINE L1 5471 6280 -20 1574 204 39 34 chr4 43422740 43423128 -158905219 + MLT1B LTR MaLR 1 390 0 2171 87 11 3 chr4 43424345 43424631 -158903716 - AluSx SINE Alu -18 294 7 1723 163 0 42 chr4 43424851 43425158 -158903189 + AluJo SINE Alu 13 306 -6 2360 86 0 22 chr4 43425161 43425476 -158902871 + AluY SINE Alu 1 308 -3 2121 143 82 86 chr4 43425482 43425956 -158902391 + Tigger3(Golem) DNA MER2_type 2507 2980 -49 2169 57 96 0 chr4 43425956 43426238 -158902109 - AluY SINE Alu -2 309 1 2121 143 82 86 chr4 43426238 43426287 -158902060 + Tigger3(Golem) DNA MER2_type 2980 3028 -1 2079 148 0 3 chr4 43426758 43427055 -158901292 - AluJb SINE Alu -12 300 5 236 146 0 0 chr4 43427207 43427248 -158901099 + Alu SINE Alu 1 41 -261 216 209 209 22 chr4 43427361 43427452 -158900895 + MIR SINE MIR 59 166 -96 249 268 189 55 chr4 43428095 43428222 -158900125 + MIR SINE MIR 47 190 -72 287 247 0 62 chr4 43428657 43428738 -158899609 - L2 LINE L2 -220 3052 2977 642 115 10 10 chr4 43428930 43429026 -158899321 - AluS SINE Alu -216 96 1 1487 174 71 20 chr4 43429063 43429357 -158898990 - AluSx SINE Alu -3 309 1 2091 72 11 0 chr4 43429523 43429788 -158898559 - AluSp SINE Alu -16 297 30 584 213 55 6 chr4 43430249 43430432 -158897915 + L1M4 LINE L1 2896 3087 -3059 571 125 0 0 chr4 43430478 43430558 -158897789 + AluJ/FLAM SINE Alu 1 80 -232 1053 153 10 49 chr4 43430560 43430763 -158897584 - AluJb SINE Alu -31 281 87 1727 261 65 4 chr4 43430776 43431270 -158897077 - MLT1F LTR MaLR -8 534 11 2123 139 0 3 chr4 43431344 43431646 -158896701 - AluSx SINE Alu -11 301 1 2002 92 50 7 chr4 43432017 43432300 -158896047 + AluSg SINE Alu 2 296 -14 2045 136 0 0 chr4 43432339 43432626 -158895721 + AluSq SINE Alu 1 287 -26 889 200 7 0 chr4 43432751 43432906 -158895441 + FRAM SINE Alu 9 164 -12 237 65 0 0 chr4 43434055 43434086 -158894261 + (T)n Simple_repeat Simple_repeat 1 31 0 1469 191 144 62 chr4 43434260 43434576 -158893771 - L1M4 LINE L1 -748 5398 5109 231 36 0 0 chr4 43434576 43434604 -158893743 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 1644 114 138 0 chr4 43434605 43434851 -158893496 - AluSx SINE Alu -32 280 1 1469 191 144 62 chr4 43434851 43435172 -158893175 - L1M4 LINE L1 -1036 5110 4707 909 232 65 4 chr4 43435218 43435494 -158892853 + L1ME LINE L1 5526 5818 -348 280 245 71 31 chr4 43435534 43435632 -158892715 + L1MA10 LINE L1 6170 6271 -63 778 210 109 16 chr4 43435643 43435900 -158892447 - MER21B LTR ERV1 -109 754 474 1697 132 43 29 chr4 43435907 43436188 -158892159 - AluSx SINE Alu -27 285 1 325 237 13 13 chr4 43436233 43436309 -158892038 + 5S rRNA rRNA 44 119 -2 744 213 209 4 chr4 43436552 43436782 -158891565 - MER21B LTR ERV1 -566 297 21 1587 182 40 24 chr4 43436864 43437160 -158891187 - AluJb SINE Alu -11 301 1 269 256 111 17 chr4 43437186 43437303 -158891044 + L1ME LINE L1 5514 5641 -521 2065 163 19 11 chr4 43437350 43437725 -158890622 + MER57A LTR ERV1 8 385 -18 2289 80 3 0 chr4 43437726 43438013 -158890334 + AluSx SINE Alu 1 288 -24 2265 100 0 0 chr4 43438143 43438432 -158889915 + AluSc SINE Alu 1 289 -20 540 214 43 8 chr4 43438522 43438639 -158889708 + AluJo SINE Alu 121 241 -71 1712 164 10 27 chr4 43438645 43438944 -158889403 + AluJo SINE Alu 10 303 -9 2019 143 3 10 chr4 43438967 43439281 -158889066 + AluSx SINE Alu 1 312 0 314 211 56 0 chr4 43439336 43439407 -158888940 + AluJo SINE Alu 226 300 -2 1437 164 148 0 chr4 43439430 43439693 -158888654 + AluSx SINE Alu 1 302 0 195 315 37 65 chr4 43440092 43440115 -158888232 - MIR SINE MIR -73 135 113 1531 151 49 66 chr4 43440115 43440419 -158887928 - AluJb SINE Alu -13 299 1 195 315 37 65 chr4 43440419 43440503 -158887844 - MIR SINE MIR -95 113 31 282 242 154 77 chr4 43440549 43440731 -158887616 + L2 LINE L2 3117 3312 -1 685 211 6 42 chr4 43441227 43441393 -158886954 + FRAM SINE Alu 3 162 -4 1290 215 96 0 chr4 43441909 43442170 -158886177 - AluJo SINE Alu -21 291 6 375 197 0 0 chr4 43442302 43442373 -158885974 + FRAM SINE Alu 25 95 -71 498 75 0 0 chr4 43442573 43442640 -158885707 + (CA)n Simple_repeat Simple_repeat 2 68 0 2015 112 9 67 chr4 43442953 43443284 -158885063 + AluSx SINE Alu 1 312 0 2369 79 0 7 chr4 43443346 43443649 -158884698 + AluY SINE Alu 1 301 -10 2270 98 3 3 chr4 43443861 43444168 -158884179 + AluSp SINE Alu 1 307 -6 2529 50 7 3 chr4 43444770 43445073 -158883274 + AluY SINE Alu 1 304 -7 2176 123 0 16 chr4 43445511 43445828 -158882519 + AluSx SINE Alu 1 312 0 428 185 74 62 chr4 43446084 43446225 -158882122 + L1 LINE L1 3190 3335 -2811 2001 141 10 7 chr4 43446225 43446529 -158881818 + AluSx SINE Alu 1 305 -7 428 185 74 62 chr4 43446529 43446549 -158881798 + L1 LINE L1 3335 3353 -2793 591 201 0 37 chr4 43446551 43446685 -158881662 + FLAM_C SINE Alu 1 129 -14 1740 162 30 3 chr4 43446764 43447066 -158881281 + AluSx SINE Alu 1 310 -2 1512 122 13 13 chr4 43447103 43447333 -158881014 + MER30 DNA MER1_type 1 230 0 796 173 89 0 chr4 43447357 43447536 -158880811 - MSTB2 LTR MaLR -262 195 1 1037 216 166 12 chr4 43447562 43447821 -158880526 + AluJo SINE Alu 2 300 -2 373 124 25 0 chr4 43447822 43447904 -158880443 + L1P1 LINE L1 5653 5741 -414 2268 88 0 26 chr4 43447904 43448210 -158880137 - AluSg1 SINE Alu -9 300 3 2139 135 0 0 chr4 43448211 43448514 -158879833 - AluSx SINE Alu -9 303 1 28 95 0 0 chr4 43448759 43448843 -158879504 + AT_rich Low_complexity Low_complexity 1 84 0 2426 73 13 0 chr4 43449064 43449364 -158878983 + AluSp SINE Alu 1 304 -9 248 301 84 38 chr4 43450241 43450480 -158877867 + MARNA DNA Mariner 307 556 -30 1231 187 0 0 chr4 43451458 43451667 -158876680 + AluJo SINE Alu 90 298 -14 2604 77 50 79 chr4 43451981 43452346 -158876001 + MLT2A1 LTR ERVL 1 375 -69 315 0 0 0 chr4 43452346 43452381 -158875966 + (TA)n Simple_repeat Simple_repeat 1 35 0 2604 77 50 79 chr4 43452381 43452431 -158875916 + MLT2A1 LTR ERVL 375 404 -40 180 0 0 0 chr4 43452431 43452451 -158875896 + (TG)n Simple_repeat Simple_repeat 2 21 0 2604 77 50 79 chr4 43452451 43452491 -158875856 + MLT2A1 LTR ERVL 404 444 0 931 220 0 0 chr4 43452561 43452734 -158875613 - AluJb SINE Alu -7 305 133 1348 200 4 8 chr4 43452857 43453107 -158875240 + AluJb SINE Alu 50 298 -14 413 136 0 45 chr4 43453108 43453196 -158875151 - Tigger3(Golem) DNA MER2_type -669 2360 2277 353 200 0 148 chr4 43453187 43453229 -158875118 - Tigger3(Golem) DNA MER2_type -2921 108 61 * 688 113 19 0 chr4 43453229 43453335 -158875012 - L1PA7 LINE L1 0 6154 6047 353 200 0 148 chr4 43453335 43453407 -158874940 - Tigger3(Golem) DNA MER2_type -2968 61 11 1617 137 4 4 chr4 43453440 43453674 -158874673 + AluSx SINE Alu 3 236 -76 958 195 61 17 chr4 43453675 43453723 -158874624 + AluJo SINE Alu 60 104 -208 2059 149 7 0 chr4 43453723 43454024 -158874323 - AluSx SINE Alu -9 303 1 958 195 61 17 chr4 43454024 43454206 -158874141 + AluJo SINE Alu 104 300 -12 373 284 78 0 chr4 43455724 43455865 -158872482 + MER58A DNA MER1_type 42 193 -31 1704 190 0 16 chr4 43455889 43456200 -158872147 + AluJb SINE Alu 1 306 -6 207 211 0 0 chr4 43457922 43457960 -158870387 + T-rich Low_complexity Low_complexity 1 38 0 1601 167 0 11 chr4 43458067 43458330 -158870017 - AluSx SINE Alu -52 260 1 582 310 84 10 chr4 43459102 43459305 -158869042 - MIR SINE MIR -21 241 24 22 88 0 0 chr4 43459426 43459483 -158868864 + AT_rich Low_complexity Low_complexity 1 57 0 2417 45 21 0 chr4 43459846 43460136 -158868211 - AluY SINE Alu -15 296 1 653 173 0 18 chr4 43460202 43460312 -158868035 - FLAM_A SINE Alu -14 128 21 500 155 0 0 chr4 43460521 43460605 -158867742 + AluJ/FLAM SINE Alu 1 84 -228 465 257 65 65 chr4 43460700 43460780 -158867567 + HAL1 LINE L1 759 838 -1669 2279 111 0 0 chr4 43460780 43461086 -158867261 + AluSx SINE Alu 1 306 -6 465 257 65 65 chr4 43461086 43461266 -158867081 + HAL1 LINE L1 837 1019 -1488 316 235 17 9 chr4 43461281 43461396 -158866951 + GA-rich Low_complexity Low_complexity 2 117 0 201 152 0 0 chr4 43461435 43461468 -158866879 + A-rich Low_complexity Low_complexity 2 34 0 284 233 44 0 chr4 43461504 43461594 -158866753 + HAL1 LINE L1 1163 1256 -1251 1997 123 0 27 chr4 43461594 43461887 -158866460 + AluJb SINE Alu 14 298 -14 649 244 0 0 chr4 43462139 43462262 -158866085 + FLAM_A SINE Alu 1 123 -10 201 158 0 0 chr4 43462420 43462458 -158865889 + A-rich Low_complexity Low_complexity 1 38 0 2680 42 0 0 chr4 43463078 43463387 -158864960 - AluY SINE Alu -1 310 2 1404 167 7 57 chr4 43464244 43464599 -158863748 + AluJb SINE Alu 1 340 0 1688 168 7 23 chr4 43464614 43464923 -158863424 - AluSx SINE Alu -4 308 5 296 230 92 35 chr4 43465441 43465528 -158862819 + AluJo SINE Alu 122 213 -89 805 178 0 0 chr4 43466217 43466352 -158861995 + AluJo SINE Alu 3 137 -175 1489 196 21 14 chr4 43466353 43466639 -158861708 + AluJo SINE Alu 4 291 -21 1156 121 0 6 chr4 43466749 43466914 -158861433 + AluSg/x SINE Alu 133 296 -14 2491 59 0 7 chr4 43467053 43467357 -158860990 + AluY SINE Alu 1 302 -9 1858 137 31 7 chr4 43468587 43468879 -158859468 - AluSx SINE Alu -13 299 1 2169 110 10 3 chr4 43469659 43469959 -158858388 - AluSg SINE Alu -8 302 1 1749 178 3 20 chr4 43470541 43470839 -158857508 - AluJo SINE Alu -19 293 1 1954 152 0 29 chr4 43470842 43471157 -158857190 - AluJb SINE Alu -6 306 1 1085 174 181 15 chr4 43471450 43471709 -158856638 + AluJo SINE Alu 1 302 0 308 204 0 0 chr4 43471711 43471765 -158856582 + AluJo/FRAM SINE Alu 178 231 -71 2134 132 7 0 chr4 43472081 43472385 -158855962 + AluSp SINE Alu 1 306 -7 22 0 0 0 chr4 43472502 43472524 -158855823 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr4 43472742 43472778 -158855569 + AT_rich Low_complexity Low_complexity 1 36 0 1397 154 0 21 chr4 43473162 43473395 -158854952 + AluJo SINE Alu 76 303 -9 1996 135 4 0 chr4 43473765 43474046 -158854301 + AluSx SINE Alu 1 282 -30 2324 83 0 0 chr4 43474557 43474846 -158853501 + AluY SINE Alu 1 289 -22 25 0 0 0 chr4 43475122 43475147 -158853200 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr4 43476151 43476179 -158852168 + AT_rich Low_complexity Low_complexity 1 28 0 1160 227 0 4 chr4 43476314 43476539 -158851808 - MER58A DNA MER1_type 0 224 1 1703 160 0 56 chr4 43476647 43476953 -158851394 + AluJo SINE Alu 1 289 -23 21 36 0 0 chr4 43477077 43477105 -158851242 + AT_rich Low_complexity Low_complexity 1 28 0 207 261 0 0 chr4 43477947 43477993 -158850354 + GA-rich Low_complexity Low_complexity 2 47 0 2097 132 3 6 chr4 43478242 43478553 -158849794 + AluSx SINE Alu 1 310 -2 1047 146 87 11 chr4 43478649 43478834 -158849513 + AluJb SINE Alu 87 285 -27 312 27 0 0 chr4 43478834 43478871 -158849476 + (CA)n Simple_repeat Simple_repeat 2 38 0 395 193 26 79 chr4 43479445 43479559 -158848788 + MLT1H LTR MaLR 442 549 0 255 259 0 0 chr4 43479766 43479824 -158848523 + Charlie5 DNA MER1_type 2 59 -2553 473 127 36 27 chr4 43479833 43479943 -158848404 + Charlie5 DNA MER1_type 2430 2540 -72 2163 137 0 0 chr4 43480025 43480325 -158848022 + AluSx SINE Alu 1 300 -12 180 97 0 0 chr4 43480365 43480396 -158847951 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 283 300 20 60 chr4 43480458 43480558 -158847789 + MIR3 SINE MIR 90 185 -23 735 183 9 113 chr4 43481145 43481232 -158847115 - MER2 DNA MER2_type -138 207 112 2032 146 10 0 chr4 43481232 43481533 -158846814 + AluSx SINE Alu 1 304 -8 735 183 9 113 chr4 43481533 43481674 -158846673 - MER2 DNA MER2_type -233 112 3 1756 131 25 135 chr4 43481750 43481913 -158846434 - LTR24C LTR ERV1 0 635 456 1806 125 90 0 chr4 43481913 43482192 -158846155 - AluSx SINE Alu -8 304 1 2141 106 3 3 chr4 43482195 43482488 -158845859 - AluSx SINE Alu -19 293 1 783 181 0 15 chr4 43482490 43482623 -158845724 - AluJo/FLAM SINE Alu -171 131 1 1756 131 25 135 chr4 43482623 43482768 -158845579 - LTR24C LTR ERV1 -182 453 294 2519 65 0 10 chr4 43482768 43483078 -158845269 - AluY SINE Alu -4 307 1 1984 161 0 3 chr4 43483080 43483384 -158844963 - AluSx SINE Alu -9 303 1 1756 131 25 135 chr4 43483384 43483552 -158844795 - LTR24C LTR ERV1 -342 293 202 367 94 0 0 chr4 43483654 43483713 -158844634 + AluSq/x SINE Alu 75 124 -178 1990 131 0 20 chr4 43483718 43484016 -158844331 - AluSx SINE Alu -16 296 5 1539 188 37 24 chr4 43484024 43484322 -158844025 - AluJb SINE Alu -10 302 1 892 209 74 81 chr4 43484613 43484749 -158843598 + HsTC2 DNA Tc2 1234 1369 -529 2425 70 3 0 chr4 43484749 43485050 -158843297 + AluY SINE Alu 2 303 -8 892 209 74 81 chr4 43485050 43485179 -158843168 + HsTC2 DNA Tc2 1369 1497 -401 1893 134 3 13 chr4 43485179 43485477 -158842870 + AluSx SINE Alu 3 297 -15 892 209 74 81 chr4 43485477 43485640 -158842707 + HsTC2 DNA Tc2 1497 1836 -62 699 328 49 56 chr4 43485644 43485857 -158842490 + ERVL LTR ERVL 4559 4772 -992 2186 128 0 0 chr4 43485857 43486155 -158842192 - AluSq SINE Alu -10 303 6 699 328 49 56 chr4 43486155 43486515 -158841832 + ERVL LTR ERVL 4772 5128 -636 306 189 9 90 chr4 43486519 43486582 -158841765 - MER5C DNA MER1_type 0 324 272 1830 171 3 0 chr4 43486582 43486868 -158841479 + AluJb SINE Alu 3 289 -23 306 189 9 90 chr4 43486868 43486915 -158841432 - MER5C DNA MER1_type -52 272 223 247 222 63 16 chr4 43486951 43487014 -158841333 - MER5C DNA MER1_type -210 114 49 1787 140 0 67 chr4 43487192 43487507 -158840840 + AluJo SINE Alu 1 294 -18 1719 105 0 16 chr4 43487509 43487756 -158840591 - AluSx SINE Alu -69 243 1 201 39 0 0 chr4 43487806 43487832 -158840515 + (A)n Simple_repeat Simple_repeat 1 26 0 1518 169 17 30 chr4 43487892 43488188 -158840159 + AluJb SINE Alu 1 292 -20 318 132 91 141 chr4 43488400 43488454 -158839893 + L1MC1 LINE L1 6138 6193 -140 2043 130 10 7 chr4 43488454 43488761 -158839586 + AluSx SINE Alu 1 308 -4 318 132 91 141 chr4 43488761 43488827 -158839520 + L1MC1 LINE L1 6193 6252 -81 486 149 11 11 chr4 43488861 43488955 -158839392 + L1MC1 LINE L1 6240 6333 0 2034 128 3 22 chr4 43488968 43489280 -158839067 + AluSx SINE Alu 1 306 -6 2032 139 7 7 chr4 43489343 43489644 -158838703 + AluSx SINE Alu 1 301 -11 955 132 0 0 chr4 43489932 43490068 -158838279 + AluSq SINE Alu 146 281 -32 294 95 0 0 chr4 43490068 43490110 -158838237 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 1598 109 126 18 chr4 43490110 43490395 -158837952 + LTR9 LTR ERV1 79 394 -218 558 119 0 0 chr4 43490395 43490479 -158837868 + MER30 DNA MER1_type 114 197 -33 698 197 0 0 chr4 43490711 43490828 -158837519 + AluJb SINE Alu 3 119 -193 259 146 0 0 chr4 43490843 43490884 -158837463 - L1MEd LINE L1 -5987 132 92 2009 152 7 3 chr4 43490887 43491190 -158837157 + AluSx SINE Alu 1 304 -8 1166 153 0 97 chr4 43491310 43491372 -158836975 + AluJb SINE Alu 86 152 -160 2372 95 0 0 chr4 43491372 43491677 -158836670 + AluSq SINE Alu 1 305 -8 1608 60 120 0 chr4 43491683 43491899 -158836448 + AluSc SINE Alu 54 295 -14 1166 153 0 97 chr4 43491899 43492057 -158836290 + AluJb SINE Alu 157 291 -21 865 172 64 9 chr4 43492760 43492971 -158835376 + L1ME1 LINE L1 5661 5873 -293 1802 112 22 11 chr4 43492971 43493248 -158835099 - AluSx SINE Alu -10 302 23 469 294 56 12 chr4 43493379 43493539 -158834808 - L2 LINE L2 0 3313 3147 522 100 0 0 chr4 43493569 43493639 -158834708 - Alu SINE Alu -16 295 226 928 96 0 0 chr4 43493641 43493756 -158834591 - AluSg SINE Alu -195 115 1 338 246 51 58 chr4 43494239 43494377 -158833970 + MIR3 SINE MIR 66 202 -6 1615 166 95 11 chr4 43494396 43494679 -158833668 - AluJb SINE Alu -5 307 1 2234 91 13 7 chr4 43494752 43495061 -158833286 - AluY SINE Alu 0 311 1 1921 132 10 17 chr4 43495074 43495363 -158832984 - AluSx SINE Alu -23 289 3 2380 76 0 0 chr4 43495845 43496128 -158832219 + AluSg SINE Alu 1 286 -24 195 0 39 0 chr4 43496128 43496154 -158832193 + (TAAA)n Simple_repeat Simple_repeat 2 124 0 599 159 84 0 chr4 43496163 43496270 -158832077 - FLAM_C SINE Alu -17 116 1 23 33 0 0 chr4 43496305 43496335 -158832012 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 43496620 43496643 -158831704 + AT_rich Low_complexity Low_complexity 1 23 0 2272 48 17 7 chr4 43497449 43497742 -158830605 + AluY SINE Alu 1 296 -15 1287 99 16 0 chr4 43498142 43498333 -158830014 - AluSp SINE Alu -5 308 115 488 227 27 8 chr4 43498433 43498617 -158829730 + L1PA15 LINE L1 5958 6143 -22 2242 78 0 3 chr4 43498617 43498937 -158829410 - AluY SINE Alu 0 319 1 488 227 27 8 chr4 43498937 43498961 -158829386 + L1PA15 LINE L1 6143 6165 0 2173 114 0 0 chr4 43499187 43499495 -158828852 - AluSg SINE Alu -2 308 1 1442 231 96 19 chr4 43499519 43499926 -158828421 - MLT1C LTR MaLR 0 467 24 474 18 0 0 chr4 43499926 43499981 -158828366 + (TG)n Simple_repeat Simple_repeat 2 56 0 1442 231 96 19 chr4 43499981 43500002 -158828345 - MLT1C LTR MaLR -443 24 6 1686 124 0 19 chr4 43500145 43500311 -158828036 - AluSg SINE Alu -13 297 136 2238 86 3 3 chr4 43500311 43500613 -158827734 - AluY SINE Alu -8 303 2 1686 124 0 19 chr4 43500613 43500711 -158827636 - AluSg SINE Alu -174 136 38 342 187 133 0 chr4 43500714 43500789 -158827558 + AluSg/x SINE Alu 86 170 -132 806 135 24 0 chr4 43500902 43501028 -158827319 + AluSc SINE Alu 119 247 -62 208 323 55 55 chr4 43501277 43501404 -158826943 + L2 LINE L2 2509 2635 -679 448 183 34 33 chr4 43501404 43501521 -158826826 - MER20 DNA MER1_type -137 82 1 207 0 0 0 chr4 43503343 43503366 -158824981 + (CCG)n Simple_repeat Simple_repeat 2 24 0 276 286 12 24 chr4 43504211 43504295 -158824052 + MER5A DNA MER1_type 2 84 -105 237 188 0 50 chr4 43504332 43504412 -158823935 + A-rich Low_complexity Low_complexity 1 76 0 207 227 0 0 chr4 43504413 43504457 -158823890 + MER5B DNA MER1_type 89 132 -46 2366 53 0 23 chr4 43505080 43505384 -158822963 - AluY SINE Alu -14 297 1 1681 112 0 23 chr4 43505547 43505806 -158822541 - AluSq SINE Alu -60 253 1 3249 119 57 16 chr4 43505826 43506332 -158822015 - MER1A DNA MER1_type 0 527 1 836 170 0 21 chr4 43506472 43506613 -158821734 - AluJo SINE Alu -173 139 2 2306 91 0 7 chr4 43507247 43507556 -158820791 - AluSx SINE Alu -5 307 1 2056 96 7 3 chr4 43507579 43507872 -158820475 - AluSq SINE Alu -19 294 1 1875 139 0 29 chr4 43507872 43508187 -158820160 - AluSx SINE Alu -3 309 3 2278 90 0 13 chr4 43508220 43508394 -158819953 - AluSq SINE Alu -6 307 137 2323 58 37 0 chr4 43508394 43508689 -158819658 - AluY SINE Alu -4 307 2 2278 90 0 13 chr4 43508689 43508825 -158819522 - AluSq SINE Alu -176 137 1 276 289 230 37 chr4 43508879 43509014 -158819333 + MIR SINE MIR 10 170 -92 2054 88 7 7 chr4 43509015 43509329 -158819018 - AluSq SINE Alu 0 314 1 1903 147 0 0 chr4 43509331 43509624 -158818723 - AluJb SINE Alu -19 293 1 1792 79 0 4 chr4 43509853 43510093 -158818254 - AluY SINE Alu 0 311 73 1018 212 0 14 chr4 43510194 43510416 -158817931 - AluJb SINE Alu -85 227 9 771 200 18 36 chr4 43510430 43510595 -158817752 - AluJb SINE Alu -17 295 134 1067 125 12 0 chr4 43510640 43510800 -158817547 + AluSg/x SINE Alu 135 296 -14 231 182 0 0 chr4 43511283 43511316 -158817031 + Alu SINE Alu 1 33 -275 293 230 14 27 chr4 43511316 43511390 -158816957 + MIR SINE MIR 188 260 -2 2058 133 0 3 chr4 43511390 43511699 -158816648 - AluSg SINE Alu -2 308 1 24 32 0 0 chr4 43511798 43511829 -158816518 + AT_rich Low_complexity Low_complexity 1 31 0 1945 151 0 0 chr4 43511979 43512278 -158816069 - AluSq SINE Alu -14 299 1 2018 95 0 7 chr4 43512359 43512669 -158815678 - AluSg SINE Alu 0 308 1 764 146 57 0 chr4 43512672 43512795 -158815552 - AluSq/x SINE Alu -181 131 2 2176 87 7 0 chr4 43513281 43513569 -158814778 - AluSq SINE Alu -13 300 11 1579 117 4 16 chr4 43513731 43513801 -158814546 + AluSg/x SINE Alu 65 134 -176 1932 131 0 13 chr4 43513801 43514113 -158814234 + AluSg SINE Alu 1 308 -2 1579 117 4 16 chr4 43514113 43514291 -158814056 + AluSg/x SINE Alu 134 310 0 1221 151 131 19 chr4 43514543 43514688 -158813659 - AluJo SINE Alu -16 296 169 2081 103 7 3 chr4 43514688 43514980 -158813367 - AluSc SINE Alu -16 293 1 1221 151 131 19 chr4 43514980 43515093 -158813254 - AluJo SINE Alu -143 169 9 226 125 0 25 chr4 43515158 43515198 -158813149 - U3 snRNA snRNA -178 39 1 1206 323 6 78 chr4 43515281 43515615 -158812732 - AluSx SINE Alu -2 310 1 1121 171 3 147 chr4 43515622 43515778 -158812569 - AluJb SINE Alu -13 289 205 1997 127 3 0 chr4 43515778 43516069 -158812278 - AluSp SINE Alu -18 295 4 1121 171 3 147 chr4 43516069 43516245 -158812102 - AluJb SINE Alu -97 205 5 2110 113 0 7 chr4 43516250 43516551 -158811796 - AluSg SINE Alu -11 299 1 2228 82 3 3 chr4 43516563 43516855 -158811492 - AluSg SINE Alu -14 296 5 388 163 0 50 chr4 43516877 43516957 -158811390 + AluS SINE Alu 226 301 0 1200 120 0 0 chr4 43516963 43517138 -158811209 + AluSg/x SINE Alu 118 292 -18 209 257 29 29 chr4 43517144 43517249 -158811098 + (CATA)n Simple_repeat Simple_repeat 2 106 0 1216 154 68 45 chr4 43517337 43517629 -158810718 - AluSx SINE Alu -13 299 1 1756 182 16 3 chr4 43517803 43518111 -158810236 + AluJo SINE Alu 1 312 0 772 209 68 0 chr4 43518112 43518275 -158810072 + AluJb SINE Alu 134 307 -5 2348 75 0 3 chr4 43518304 43518610 -158809737 - AluY SINE Alu -6 305 1 596 311 32 44 chr4 43518636 43518828 -158809519 + MIR SINE MIR 3 193 -69 1718 135 0 83 chr4 43518828 43518963 -158809384 + AluSx SINE Alu 1 146 -166 1902 117 0 58 chr4 43518963 43519289 -158809058 + AluSx SINE Alu 1 307 -5 1718 135 0 83 chr4 43519289 43519478 -158808869 + AluSx SINE Alu 146 298 -14 596 311 32 44 chr4 43519478 43519533 -158808814 + MIR SINE MIR 193 247 -15 226 236 46 75 chr4 43519542 43519716 -158808631 - L1ME4a LINE L1 -22 6099 5931 23 0 0 0 chr4 43519721 43519744 -158808603 + AT_rich Low_complexity Low_complexity 1 23 0 1256 112 0 21 chr4 43519766 43519954 -158808393 - AluJb SINE Alu -128 184 1 2294 57 0 10 chr4 43520259 43520556 -158807791 - AluY SINE Alu -17 294 1 338 240 110 10 chr4 43520571 43520671 -158807676 + LTR33 LTR ERVL 404 513 -8 310 294 138 46 chr4 43520743 43520955 -158807392 - MIR SINE MIR -3 259 32 1683 154 31 0 chr4 43520997 43521283 -158807064 + AluSx SINE Alu 6 300 -12 365 260 0 48 chr4 43521306 43521410 -158806937 - MER5A DNA MER1_type -70 119 21 1599 113 9 0 chr4 43521626 43521882 -158806465 + AluSx SINE Alu 58 315 0 23 0 0 0 chr4 43523269 43523292 -158805055 + AT_rich Low_complexity Low_complexity 1 23 0 1533 145 60 18 chr4 43523294 43523457 -158804890 - AluSg SINE Alu -16 294 113 2412 63 0 0 chr4 43523457 43523760 -158804587 - AluY SINE Alu -8 303 1 1533 145 60 18 chr4 43523760 43523878 -158804469 - AluSg SINE Alu -197 113 1 1228 157 0 24 chr4 43524032 43524078 -158804269 + AluSg/x SINE Alu 88 134 -176 2007 114 0 0 chr4 43524078 43524417 -158803930 + AluSx SINE Alu 2 340 0 1228 157 0 24 chr4 43524417 43524579 -158803768 + AluSg/x SINE Alu 134 292 -18 383 296 100 98 chr4 43524586 43524662 -158803685 - L2 LINE L2 -3 3310 3236 2245 109 0 0 chr4 43524662 43524975 -158803372 + AluSq SINE Alu 1 313 0 383 296 100 98 chr4 43524975 43525058 -158803289 - L2 LINE L2 -77 3236 3155 1725 158 0 20 chr4 43525058 43525350 -158802997 + AluJb SINE Alu 1 286 -26 383 296 100 98 chr4 43525350 43525568 -158802779 - L2 LINE L2 -158 3155 2931 1819 144 40 0 chr4 43525803 43526101 -158802246 + AluSx SINE Alu 1 310 -2 1244 175 52 4 chr4 43526118 43526423 -158801924 + AluJo SINE Alu 1 318 0 1209 99 0 0 chr4 43526424 43526586 -158801761 + AluSq SINE Alu 1 162 -151 1976 128 0 10 chr4 43526695 43526985 -158801362 + AluSx SINE Alu 7 293 -19 1132 171 201 13 chr4 43527073 43527372 -158800975 + L1M4 LINE L1 4976 5330 -816 1680 165 10 10 chr4 43527376 43527673 -158800674 + AluJo SINE Alu 1 297 -15 2109 131 3 0 chr4 43527675 43527981 -158800366 + AluSx SINE Alu 1 307 -5 324 247 24 0 chr4 43528087 43528172 -158800175 - L1MD2 LINE L1 -417 5942 5856 311 195 13 52 chr4 43528307 43528384 -158799963 + L1MC4 LINE L1 6648 6721 -1321 869 202 52 0 chr4 43528844 43529017 -158799330 - AluJb SINE Alu -13 299 118 819 164 0 0 chr4 43529248 43529376 -158798971 + FLAM_C SINE Alu 5 132 -1 1621 129 111 7 chr4 43529439 43529718 -158798629 + AluSg SINE Alu 1 308 -2 1524 183 3 13 chr4 43529843 43530144 -158798203 + AluJb SINE Alu 11 308 -4 1484 158 79 0 chr4 43530224 43530503 -158797844 + AluSx SINE Alu 1 301 -11 366 23 0 0 chr4 43530504 43530547 -158797800 + (CA)n Simple_repeat Simple_repeat 2 44 0 710 82 0 21 chr4 43530678 43530775 -158797572 - U6 snRNA snRNA 0 107 13 2210 111 0 0 chr4 43530907 43531205 -158797142 + AluSx SINE Alu 1 298 -14 1818 134 53 0 chr4 43531213 43531497 -158796850 + AluSx SINE Alu 1 299 -13 1986 88 29 0 chr4 43531873 43532145 -158796202 + AluY SINE Alu 1 280 -31 1045 167 0 0 chr4 43532161 43532335 -158796012 + AluSg/x SINE Alu 132 305 -7 911 140 37 30 chr4 43532397 43532524 -158795823 + AluSx SINE Alu 11 141 -171 1938 131 0 10 chr4 43532524 43532821 -158795526 + AluSq SINE Alu 1 294 -19 911 140 37 30 chr4 43532821 43532857 -158795490 + AluSx SINE Alu 141 175 -137 1416 184 50 14 chr4 43532914 43533191 -158795156 + AluJb SINE Alu 1 287 -25 515 203 8 17 chr4 43533264 43533382 -158794965 - AluSc SINE Alu -16 293 177 466 218 76 76 chr4 43533576 43533773 -158794574 + L1MC4a LINE L1 6477 6673 -1135 1319 197 52 21 chr4 43533776 43534065 -158794282 + AluJo SINE Alu 2 299 -3 1330 110 237 0 chr4 43534070 43534327 -158794020 + AluSg SINE Alu 3 313 0 1273 276 131 28 chr4 43534374 43534824 -158793523 + MLT1H1 LTR MaLR 1 510 -45 2463 117 26 78 chr4 43534824 43535321 -158793026 + L1MB3 LINE L1 5710 6180 -3 1273 276 131 28 chr4 43535321 43535373 -158792974 + MLT1H1 LTR MaLR 510 555 0 2117 113 10 3 chr4 43536069 43536371 -158791976 + AluSq SINE Alu 1 304 -9 2022 138 3 3 chr4 43536376 43536681 -158791666 + AluSx SINE Alu 1 305 -7 2172 110 0 3 chr4 43536720 43537030 -158791317 + AluSg SINE Alu 2 310 0 1295 97 11 5 chr4 43537031 43537216 -158791131 + AluSq SINE Alu 1 186 -127 355 125 0 36 chr4 43537216 43537299 -158791048 + AluSc SINE Alu 228 308 0 740 179 0 8 chr4 43537472 43537595 -158790752 - AluJb SINE Alu -178 134 13 488 47 0 0 chr4 43537698 43537762 -158790585 - AluSp/q SINE Alu -12 301 238 1389 103 5 0 chr4 43537787 43537981 -158790366 - AluSp SINE Alu -14 299 105 433 81 48 0 chr4 43538081 43538143 -158790204 - L1MC/D LINE L1 -420 5822 5758 2181 117 0 0 chr4 43538159 43538458 -158789889 - AluSx SINE Alu -13 299 1 650 269 22 70 chr4 43538459 43538730 -158789617 - HAL1 LINE L1 -1614 893 636 1750 110 4 19 chr4 43538889 43539153 -158789194 - AluSg SINE Alu -8 302 43 195 100 0 0 chr4 43539178 43539208 -158789139 + (A)n Simple_repeat Simple_repeat 1 30 0 1967 123 3 10 chr4 43539234 43539535 -158788812 - AluSx SINE Alu -13 299 1 849 166 3 180 chr4 43540136 43540275 -158788072 - MER96B DNA MER1_type? -183 234 72 2290 80 0 7 chr4 43540275 43540576 -158787771 + AluSp SINE Alu 1 299 -14 849 166 3 180 chr4 43540576 43540596 -158787751 - MER96B DNA MER1_type? -345 72 50 1824 132 0 40 chr4 43540596 43540731 -158787616 + AluSq SINE Alu 1 140 -173 2149 58 0 0 chr4 43540731 43540991 -158787356 + AluY SINE Alu 40 299 -12 1824 132 0 40 chr4 43540991 43541158 -158787189 + AluSq SINE Alu 140 291 -22 849 166 3 180 chr4 43541158 43541281 -158787066 - MER96B DNA MER1_type? -367 50 1 180 0 0 0 chr4 43541290 43541310 -158787037 + (T)n Simple_repeat Simple_repeat 1 20 0 289 220 0 0 chr4 43541417 43541476 -158786871 - MER2 DNA MER2_type -9 336 278 2023 121 3 10 chr4 43541476 43541790 -158786557 + AluSp SINE Alu 1 312 -1 1797 136 0 7 chr4 43541796 43542082 -158786265 + AluJb SINE Alu 5 288 -24 2401 68 0 0 chr4 43542112 43542419 -158785928 + AluY SINE Alu 1 307 -4 1746 79 0 0 chr4 43542451 43542680 -158785667 + AluY SINE Alu 1 229 -82 484 111 0 0 chr4 43542780 43542843 -158785504 - AluSg/x SINE Alu -30 279 217 1818 147 0 0 chr4 43542899 43543178 -158785169 - AluSx SINE Alu -33 279 1 23 54 0 0 chr4 43543442 43543479 -158784868 + AT_rich Low_complexity Low_complexity 1 37 0 1932 111 17 0 chr4 43543859 43544148 -158784199 + AluSx SINE Alu 11 304 -8 718 247 7 0 chr4 43544149 43544303 -158784044 - MER3 DNA MER1_type -54 155 1 2076 126 0 7 chr4 43544339 43544649 -158783698 - AluSx SINE Alu -2 310 3 906 66 0 8 chr4 43544795 43544917 -158783430 - AluSc SINE Alu -188 121 1 947 174 0 0 chr4 43545026 43545217 -158783130 - AluSg/x SINE Alu 0 322 132 2152 96 0 3 chr4 43545217 43545509 -158782838 - AluSx SINE Alu -21 291 1 2051 118 7 0 chr4 43545520 43545817 -158782530 - AluSg SINE Alu -11 299 1 1984 130 3 0 chr4 43545819 43546112 -158782235 - AluSx SINE Alu -18 294 1 324 0 0 0 chr4 43546263 43546299 -158782048 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 337 178 11 67 chr4 43546300 43546390 -158781957 - MLT1E1 LTR MaLR -402 252 168 1111 181 5 0 chr4 43546556 43546744 -158781603 - AluJ SINE Alu -19 293 105 236 200 53 13 chr4 43546817 43546892 -158781455 + L1MC4 LINE L1 6628 6705 -1337 417 323 0 0 chr4 43546899 43547072 -158781275 + (TA)n Simple_repeat Simple_repeat 1 271 -36 309 313 0 42 chr4 43547072 43547168 -158781179 - L1MC4 LINE L1 -1337 6705 6614 417 323 0 0 chr4 43547168 43547206 -158781141 + (TA)n Simple_repeat Simple_repeat 270 307 0 238 152 43 0 chr4 43547206 43547252 -158781095 - L1MC3 LINE L1 -1139 6646 6599 2195 96 3 7 chr4 43547256 43547548 -158780799 - AluSg SINE Alu -19 291 1 758 125 0 17 chr4 43547573 43547693 -158780654 - AluJ SINE Alu -184 118 1 2252 148 80 48 chr4 43547694 43548132 -158780215 + MLT2B3 LTR ERVL 103 554 0 333 316 70 13 chr4 43548133 43548291 -158780056 - L2 LINE L2 -1324 1990 1824 3532 194 42 57 chr4 43548298 43548431 -158779916 + L1MC4a LINE L1 6553 6687 -1121 2002 132 42 0 chr4 43548431 43548719 -158779628 + AluSx SINE Alu 1 300 -12 1623 113 0 4 chr4 43548723 43548954 -158779393 + AluSq SINE Alu 81 310 -3 3532 194 42 57 chr4 43548954 43549000 -158779347 + L1MC4a LINE L1 6690 6735 -1073 2013 130 3 59 chr4 43549000 43549324 -158779023 + AluJb SINE Alu 1 306 -6 3532 194 42 57 chr4 43549324 43549523 -158778824 + L1MC4a LINE L1 6735 6936 -872 1736 184 7 7 chr4 43549523 43549833 -158778514 + AluJo SINE Alu 1 310 -2 3532 194 42 57 chr4 43549833 43550025 -158778322 + L1MC4a LINE L1 6936 7129 -679 2457 72 0 25 chr4 43550025 43550365 -158777982 - AluY SINE Alu 0 311 2 3532 194 42 57 chr4 43550365 43550506 -158777841 + L1MC4a LINE L1 7129 7271 -537 1745 172 7 10 chr4 43550506 43550809 -158777538 + AluJo SINE Alu 3 304 -8 3532 194 42 57 chr4 43550809 43551131 -158777216 + L1MC4a LINE L1 7271 7492 -316 1253 226 10 24 chr4 43551136 43551428 -158776919 + AluJo SINE Alu 6 293 -19 822 143 0 0 chr4 43551429 43551555 -158776792 + L1MD3 LINE L1 7657 7782 -213 1253 131 5 30 chr4 43551555 43551787 -158776560 + AluSg/x SINE Alu 94 312 0 2349 79 3 0 chr4 43551788 43552080 -158776267 + AluY SINE Alu 1 293 -18 1031 177 9 9 chr4 43552080 43552295 -158776052 + L1MD3 LINE L1 7775 7989 -6 2179 113 0 0 chr4 43552352 43552675 -158775672 + AluSx SINE Alu 1 323 0 264 216 81 0 chr4 43552935 43553009 -158775338 + MIR SINE MIR 74 153 -109 437 226 20 10 chr4 43553018 43553120 -158775227 + MLT1J1 LTR MaLR 1 103 -343 2353 104 0 0 chr4 43553424 43553722 -158774625 + AluSq SINE Alu 1 298 -15 310 209 191 35 chr4 43553725 43553840 -158774507 + FLAM_A SINE Alu 1 133 0 2359 110 0 0 chr4 43553880 43554188 -158774159 + AluSg SINE Alu 1 308 -2 1219 150 16 5 chr4 43554590 43554783 -158773564 - AluJb SINE Alu -13 299 105 2505 164 63 36 chr4 43554911 43554998 -158773349 + MER4E LTR ERV1 92 175 -604 2201 85 0 61 chr4 43554998 43555187 -158773160 - AluSc SINE Alu 0 309 147 2205 102 3 0 chr4 43555187 43555481 -158772866 - AluSg SINE Alu -15 295 1 2201 85 0 61 chr4 43555481 43555620 -158772727 - AluSc SINE Alu -162 147 1 2505 164 63 36 chr4 43555620 43556027 -158772320 + MER4E LTR ERV1 175 599 -180 1002 154 59 0 chr4 43556031 43556200 -158772147 - AluSg/x SINE Alu -2 308 130 1178 146 0 0 chr4 43556378 43556556 -158771791 - AluSg/x SINE Alu 0 310 133 2257 109 0 0 chr4 43556557 43556850 -158771497 - AluSx SINE Alu -19 293 1 832 117 0 29 chr4 43558093 43558230 -158770117 + FLAM_C SINE Alu 1 133 0 1154 153 0 0 chr4 43558239 43558415 -158769932 - AluSg/x SINE Alu -3 309 134 1951 158 0 0 chr4 43558442 43558746 -158769601 + AluJb SINE Alu 1 304 -8 213 367 27 27 chr4 43558756 43558903 -158769444 - MIR SINE MIR -113 149 3 1726 179 20 3 chr4 43559228 43559525 -158768822 + AluJo SINE Alu 1 302 -10 28 0 0 0 chr4 43559610 43559638 -158768709 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 43559737 43559758 -158768589 + AT_rich Low_complexity Low_complexity 1 21 0 195 129 0 0 chr4 43559874 43559905 -158768442 + (T)n Simple_repeat Simple_repeat 1 31 0 2053 148 3 0 chr4 43560399 43560709 -158767638 + AluSx SINE Alu 1 311 -1 303 244 45 119 chr4 43560725 43561036 -158767311 - MLT1K LTR MaLR -12 576 289 665 157 104 0 chr4 43561092 43561207 -158767140 - FLAM_A SINE Alu -6 127 1 2035 117 0 64 chr4 43561245 43561571 -158766776 + AluSx SINE Alu 1 305 -7 2098 99 10 30 chr4 43561575 43561713 -158766634 + AluSx SINE Alu 1 140 -172 2184 90 25 0 chr4 43561713 43562020 -158766327 + AluSp SINE Alu 1 314 0 2098 99 10 30 chr4 43562020 43562182 -158766165 + AluSx SINE Alu 140 296 -16 1033 201 141 34 chr4 43562189 43562281 -158766066 + AluJo SINE Alu 6 87 -225 2310 100 7 0 chr4 43562281 43562581 -158765766 + AluSx SINE Alu 1 302 -10 1033 201 141 34 chr4 43562581 43562751 -158765596 + AluJo SINE Alu 87 296 -16 469 0 0 32 chr4 43562883 43562946 -158765401 + (TCCA)n Simple_repeat Simple_repeat 3 63 0 479 254 137 34 chr4 43562981 43563254 -158765093 - L1MC4a LINE L1 -394 5771 5652 322 240 23 31 chr4 43563225 43563354 -158764993 - L1MC4a LINE L1 -2427 5381 5254 * 1515 129 22 9 chr4 43563772 43563997 -158764350 + AluSx SINE Alu 37 264 -48 186 71 0 0 chr4 43564002 43564030 -158764317 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 2295 106 0 3 chr4 43564290 43564593 -158763754 + AluSx SINE Alu 1 302 -10 345 188 59 20 chr4 43565062 43565163 -158763184 - MER103 DNA DNA -8 158 54 1480 157 0 0 chr4 43565348 43565571 -158762776 - AluJb SINE Alu -4 308 86 1449 161 0 0 chr4 43565669 43565886 -158762461 - AluJb SINE Alu -11 301 85 220 248 101 0 chr4 43565967 43566094 -158762253 - MIR SINE MIR -27 235 86 2270 105 0 0 chr4 43566288 43566582 -158761765 - AluSg SINE Alu -16 294 1 2709 45 0 0 chr4 43567088 43567398 -158760949 - AluY SINE Alu -1 310 1 1821 134 11 4 chr4 43567655 43567930 -158760417 + AluSq SINE Alu 1 277 -36 264 59 0 0 chr4 43569065 43569099 -158759248 + (CCA)n Simple_repeat Simple_repeat 1 34 0 1839 155 3 0 chr4 43572181 43572477 -158755870 - AluJb SINE Alu -15 297 1 207 0 0 0 chr4 43572742 43572765 -158755582 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1352 137 173 12 chr4 43572765 43573007 -158755340 - AluSg SINE Alu -18 282 1 379 299 111 0 chr4 43573145 43573289 -158755058 - MIR SINE MIR -36 226 67 894 129 0 15 chr4 43573356 43573488 -158754859 - FLAM_C SINE Alu 0 133 4 2125 126 0 0 chr4 43573608 43573902 -158754445 - AluSx SINE Alu -18 294 1 1827 179 0 7 chr4 43573960 43574261 -158754086 - AluJo SINE Alu -13 299 1 760 157 0 57 chr4 43574330 43574470 -158753877 - FLAM_C SINE Alu 0 133 2 1218 138 0 0 chr4 43574540 43574707 -158753640 - AluSg/x SINE Alu -26 284 118 2186 113 0 0 chr4 43574713 43575024 -158753323 - AluSq SINE Alu 0 312 2 2221 107 3 0 chr4 43575027 43575325 -158753022 - AluSq SINE Alu -14 299 1 190 28 28 56 chr4 43575369 43575405 -158752942 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1927 93 0 0 chr4 43575439 43575685 -158752662 - AluY SINE Alu -11 300 55 501 314 104 9 chr4 43575692 43575912 -158752435 + L2 LINE L2 2532 2772 -542 246 287 7 100 chr4 43576092 43576242 -158752105 + L2 LINE L2 2948 3083 -189 298 200 71 35 chr4 43576532 43576617 -158751730 - MLT1K LTR MaLR -2 586 499 2231 107 3 3 chr4 43576980 43576991 -158751356 - AluSq SINE Alu -13 300 290 194 0 0 37 chr4 43576991 43577018 -158751329 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2231 107 3 3 chr4 43577018 43577306 -158751041 - AluSq SINE Alu -22 291 1 720 148 19 0 chr4 43577349 43577457 -158750890 - FLAM_C SINE Alu -32 111 2 2311 94 0 0 chr4 43577648 43577934 -158750413 - AluSg SINE Alu -23 287 2 2064 96 14 14 chr4 43578150 43578430 -158749917 - AluSg SINE Alu -30 280 1 266 343 50 0 chr4 43578651 43578750 -158749597 - L2 LINE L2 -965 2349 2246 2314 99 0 0 chr4 43579298 43579591 -158748756 - AluSc SINE Alu -16 293 1 2176 140 0 3 chr4 43579676 43579983 -158748364 - AluSx SINE Alu -6 306 1 4643 171 32 23 chr4 43580082 43580413 -158747934 - L1MB2 LINE L1 0 6171 5844 1897 149 30 17 chr4 43580413 43580715 -158747632 - AluJb SINE Alu -6 306 1 4643 171 32 23 chr4 43580715 43581050 -158747297 - L1MB2 LINE L1 -327 5844 5513 1945 138 65 0 chr4 43581050 43581340 -158747007 - AluSx SINE Alu -3 309 1 4643 171 32 23 chr4 43581340 43582166 -158746181 - L1MB2 LINE L1 -658 5513 4664 2416 84 6 3 chr4 43582197 43582508 -158745839 + AluSx SINE Alu 1 312 0 1667 124 98 4 chr4 43582516 43582782 -158745565 + AluSx SINE Alu 1 291 -21 1484 159 32 62 chr4 43582986 43583295 -158745052 + AluJo SINE Alu 1 300 -12 325 244 154 0 chr4 43583441 43583564 -158744783 - L1MC4 LINE L1 -26 8016 7875 1853 152 0 7 chr4 43583811 43584094 -158744253 - AluJb SINE Alu -14 298 18 1562 139 0 0 chr4 43584179 43584402 -158743945 - AluSg/x SINE Alu -6 304 82 460 274 35 27 chr4 43584603 43584923 -158743424 - L1MC5 LINE L1 -547 7495 7260 2352 96 3 0 chr4 43584923 43585226 -158743121 - AluSq SINE Alu -9 304 1 216 0 0 0 chr4 43585251 43585275 -158743072 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1087 135 0 6 chr4 43585280 43585436 -158742911 - AluSg/x SINE Alu -24 288 134 1731 150 0 66 chr4 43585436 43585603 -158742744 - AluSx SINE Alu -13 299 161 2392 90 0 0 chr4 43585603 43585903 -158742444 - AluSc SINE Alu -9 300 1 1731 150 0 66 chr4 43585903 43586055 -158742292 - AluSx SINE Alu -151 161 1 2048 109 29 29 chr4 43586068 43586380 -158741967 - AluSx SINE Alu 0 312 1 437 231 43 62 chr4 43586388 43586622 -158741725 - L1MC4 LINE L1 -728 7233 7028 21 0 0 0 chr4 43586715 43586736 -158741611 + AT_rich Low_complexity Low_complexity 1 21 0 1184 168 0 5 chr4 43586959 43587144 -158741203 - AluJo SINE Alu -19 293 110 416 226 11 11 chr4 43587256 43587349 -158740998 - AluJ/FLAM SINE Alu -209 93 1 482 73 0 0 chr4 43587380 43587448 -158740899 + Alu SINE Alu 241 308 -4 342 0 0 0 chr4 43587449 43587487 -158740860 + (TA)n Simple_repeat Simple_repeat 1 38 0 3708 218 81 25 chr4 43587487 43588074 -158740273 - L1M4 LINE L1 -2380 3766 3213 2400 110 0 0 chr4 43588074 43588384 -158739963 - AluSx SINE Alu -2 310 1 2254 122 0 0 chr4 43588389 43588684 -158739663 - AluSq SINE Alu -18 295 1 3708 218 81 25 chr4 43588684 43588856 -158739491 - L1M4 LINE L1 -2936 3210 3049 1729 149 0 58 chr4 43588856 43589014 -158739333 - AluSx SINE Alu -21 291 158 1730 132 62 7 chr4 43589014 43589336 -158739011 - AluSp SINE Alu 0 313 5 1729 149 0 58 chr4 43589336 43589486 -158738861 - AluSx SINE Alu -154 158 1 3708 218 81 25 chr4 43589486 43589984 -158738363 - L1M4 LINE L1 -3097 3049 2431 2165 119 13 0 chr4 43589984 43590286 -158738061 - AluSp SINE Alu 0 313 8 1263 160 91 9 chr4 43590286 43590517 -158737830 - AluSx SINE Alu -62 250 1 2221 96 14 3 chr4 43590531 43590822 -158737525 - AluSq SINE Alu -19 294 1 363 243 10 10 chr4 43590825 43590928 -158737419 - L1M4 LINE L1 -3710 2436 2334 439 125 14 0 chr4 43590937 43591009 -158737338 + MER3 DNA MER1_type 137 209 0 305 301 45 61 chr4 43591018 43591264 -158737083 - L2 LINE L2 -122 3191 2950 537 276 107 5 chr4 43591264 43591460 -158736887 - L2 LINE L2 -517 2797 2582 292 226 0 60 chr4 43591481 43591565 -158736782 - L2 LINE L2 -943 2371 2293 1810 252 152 9 chr4 43591590 43592391 -158735956 - L2 LINE L2 -92 3221 2292 1102 188 20 0 chr4 43593290 43593487 -158734860 - MER20 DNA MER1_type -17 202 2 409 289 0 9 chr4 43593490 43593604 -158734743 + L2 LINE L2 3191 3303 -10 380 263 206 31 chr4 43593658 43593818 -158734529 + MIR SINE MIR 2 189 -73 344 318 71 30 chr4 43594423 43594688 -158733659 - L1ME LINE L1 -375 5746 5458 2220 96 0 23 chr4 43594688 43594991 -158733356 - AluSq SINE Alu -17 296 1 344 318 71 30 chr4 43594991 43595121 -158733226 - L1ME LINE L1 -663 5458 5335 805 248 64 4 chr4 43595482 43595716 -158732631 - MIR SINE MIR -14 248 1 1696 168 32 23 chr4 43595804 43596113 -158732234 - AluJb SINE Alu 0 312 1 434 247 115 39 chr4 43596145 43596327 -158732020 + MIR SINE MIR 19 214 -48 2139 96 0 11 chr4 43596592 43596896 -158731451 - AluSx SINE Alu 0 306 6 29 0 0 0 chr4 43597355 43597384 -158730963 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 43597442 43597463 -158730884 + AT_rich Low_complexity Low_complexity 1 21 0 205 152 0 0 chr4 43597479 43597512 -158730835 + (TTG)n Simple_repeat Simple_repeat 3 35 0 2472 45 7 0 chr4 43599401 43599693 -158728654 - AluY SINE Alu -17 294 1 2328 65 7 0 chr4 43600249 43600539 -158727808 - AluY SINE Alu -15 296 5 1484 138 9 5 chr4 43600767 43600991 -158727356 - AluSg/x SINE Alu -12 300 76 * 1942 159 0 10 chr4 43600990 43601292 -158727055 - AluJo SINE Alu -13 299 1 540 186 0 20 chr4 43601411 43601513 -158726834 + L2 LINE L2 3187 3286 -27 1049 216 39 0 chr4 43601769 43601977 -158726370 - AluJo SINE Alu -15 297 82 1740 139 0 0 chr4 43601983 43602235 -158726112 - AluSx SINE Alu -5 307 56 1595 158 88 0 chr4 43602543 43602815 -158725532 - AluJo SINE Alu -14 298 3 2148 119 3 0 chr4 43602831 43603125 -158725222 - AluSx SINE Alu -17 295 1 291 267 12 0 chr4 43603200 43603286 -158725061 + MIR SINE MIR 160 246 -16 1767 150 3 36 chr4 43603368 43603675 -158724672 - AluSx SINE Alu -15 297 1 2334 82 0 10 chr4 43603762 43604054 -158724293 - AluSg SINE Alu -20 290 2 2258 119 0 0 chr4 43604262 43604556 -158723791 - AluSc SINE Alu -15 294 1 532 252 39 0 chr4 43604730 43604857 -158723490 + MIR SINE MIR 60 191 -71 2205 129 0 0 chr4 43604877 43605172 -158723175 + AluSx SINE Alu 1 295 -17 2937 163 150 63 chr4 43605237 43606008 -158722339 - L1MB8 LINE L1 -2 6176 5327 2065 118 0 0 chr4 43606008 43606279 -158722068 - AluSx SINE Alu -41 271 1 2937 163 150 63 chr4 43606279 43606334 -158722013 - L1MB8 LINE L1 -851 5327 5278 698 220 67 0 chr4 43606540 43606749 -158721598 - L1MD3 LINE L1 -8 7987 7765 2235 104 0 0 chr4 43606773 43607060 -158721287 - AluSg SINE Alu -23 287 1 2068 146 0 0 chr4 43607063 43607357 -158720990 - AluSx SINE Alu -18 294 1 22 0 0 0 chr4 43607881 43607903 -158720444 + AT_rich Low_complexity Low_complexity 1 22 0 2153 113 3 3 chr4 43608145 43608445 -158719902 - AluSq SINE Alu -13 300 1 341 270 87 93 chr4 43608448 43608748 -158719599 - L1ME4a LINE L1 -222 5882 5585 841 119 0 0 chr4 43609216 43609334 -158719013 - FLAM_C SINE Alu -15 118 1 1268 177 50 3 chr4 43609729 43610011 -158718336 - L1MB7 LINE L1 -78 6106 5812 391 301 22 11 chr4 43610012 43610195 -158718152 - L1ME4a LINE L1 -2365 3764 3580 908 276 98 54 chr4 43610273 43610658 -158717689 - L1ME4a LINE L1 -2740 3389 2955 1781 180 3 0 chr4 43610658 43610952 -158717395 + AluJb SINE Alu 2 296 -16 908 276 98 54 chr4 43610952 43611260 -158717087 - L1ME4a LINE L1 -3174 2955 2662 630 288 63 14 chr4 43611320 43611733 -158716614 - L1ME4a LINE L1 -3583 2546 2114 22 80 0 0 chr4 43611867 43611917 -158716430 + AT_rich Low_complexity Low_complexity 1 50 0 601 276 50 35 chr4 43612089 43612728 -158715619 - L1MEd LINE L1 -4586 1724 1043 251 269 0 26 chr4 43612817 43612895 -158715452 + L1MEd LINE L1 279 354 -5765 307 322 116 0 chr4 43612908 43613054 -158715293 + L1MEd LINE L1 591 753 -5366 2084 96 10 51 chr4 43613579 43613893 -158714454 + AluSp SINE Alu 1 301 -12 732 256 94 27 chr4 43614457 43614680 -158713667 + MIR SINE MIR 1 238 -24 259 301 14 0 chr4 43615120 43615193 -158713154 - L2 LINE L2 -4 3309 3236 29 28 0 0 chr4 43615233 43615269 -158713078 + AT_rich Low_complexity Low_complexity 1 36 0 1219 124 0 0 chr4 43617813 43617982 -158710365 - AluSg/x SINE Alu -9 301 133 1672 118 51 8 chr4 43618834 43619089 -158709258 - AluSc SINE Alu -43 266 1 2121 91 29 33 chr4 43619113 43619420 -158708927 - AluY SINE Alu -4 307 2 266 225 36 27 chr4 43619595 43619706 -158708641 - L1ME4a LINE L1 -1 6120 6009 2200 118 7 0 chr4 43619817 43620122 -158708225 + AluSx SINE Alu 1 307 -5 2158 125 0 3 chr4 43620147 43620284 -158708063 + AluSx SINE Alu 1 137 -175 2234 106 10 3 chr4 43620284 43620585 -158707762 + AluSp SINE Alu 1 303 -10 2158 125 0 3 chr4 43620585 43620752 -158707595 + AluSx SINE Alu 137 304 -8 670 157 50 6 chr4 43620846 43621005 -158707342 + L1MB7 LINE L1 5284 5449 -729 400 160 0 0 chr4 43621029 43621104 -158707243 + FLAM_C SINE Alu 64 138 -5 2437 70 0 0 chr4 43621157 43621455 -158706892 - AluY SINE Alu -13 298 1 215 241 0 0 chr4 43621578 43621632 -158706715 + A-rich Low_complexity Low_complexity 1 54 0 3464 159 34 12 chr4 43621634 43622311 -158706036 + L1MB7 LINE L1 5485 6176 -8 773 266 90 69 chr4 43622350 43622430 -158705917 - L2 LINE L2 -715 2599 2522 1943 109 33 4 chr4 43622430 43622706 -158705641 - AluSx SINE Alu -28 284 1 773 266 90 69 chr4 43622706 43622890 -158705457 - L2 LINE L2 -792 2522 2343 1694 139 25 96 chr4 43622890 43623087 -158705260 - AluSx SINE Alu -11 301 92 2029 92 60 0 chr4 43623087 43623369 -158704978 - AluSp SINE Alu -14 299 1 2349 101 0 0 chr4 43623369 43623665 -158704682 - AluSg SINE Alu -13 297 1 1694 139 25 96 chr4 43623665 43623790 -158704557 - AluSx SINE Alu -218 94 1 773 266 90 69 chr4 43623790 43623903 -158704444 - L2 LINE L2 -971 2343 2213 1175 152 11 11 chr4 43623905 43624096 -158704251 - AluJo SINE Alu -8 304 114 452 241 51 23 chr4 43624099 43624295 -158704052 - L2 LINE L2 -1148 2166 1916 702 110 0 131 chr4 43624347 43624412 -158703935 + FLAM_C SINE Alu 15 52 -260 1432 115 119 81 chr4 43624412 43624707 -158703640 - AluSq SINE Alu -5 308 3 702 110 0 131 chr4 43624707 43624786 -158703561 + FLAM_C SINE Alu 52 140 -172 2090 133 10 0 chr4 43624789 43625089 -158703258 - AluSx SINE Alu -9 303 1 37 23 0 0 chr4 43625171 43625215 -158703132 + AT_rich Low_complexity Low_complexity 1 44 0 1738 161 14 18 chr4 43625216 43625501 -158702846 - AluJo SINE Alu -26 286 3 278 274 35 9 chr4 43625537 43625650 -158702697 - L1M4 LINE L1 -3439 2707 2592 203 318 0 16 chr4 43625656 43625719 -158702628 + CT-rich Low_complexity Low_complexity 3 64 0 23 0 0 0 chr4 43625719 43625742 -158702605 + AT_rich Low_complexity Low_complexity 1 23 0 1745 175 4 4 chr4 43625828 43626108 -158702239 - AluSx SINE Alu -22 290 11 3047 203 70 67 chr4 43626153 43626200 -158702147 - L1MD1 LINE L1 -309 5933 5888 1735 99 61 87 chr4 43626200 43626512 -158701835 - AluSx SINE Alu -8 304 1 3047 203 70 67 chr4 43626512 43626957 -158701390 - L1MD1 LINE L1 -354 5888 5446 2175 114 3 0 chr4 43626957 43627254 -158701093 - AluSp SINE Alu -15 298 1 3047 203 70 67 chr4 43627254 43627388 -158700959 - L1MD1 LINE L1 -796 5446 5314 1648 172 0 60 chr4 43627388 43627719 -158700628 - AluJo SINE Alu 0 312 2 3047 203 70 67 chr4 43627719 43627890 -158700457 - L1MD1 LINE L1 -928 5314 5145 2213 126 0 0 chr4 43627890 43628191 -158700156 - AluSx SINE Alu -11 301 1 3047 203 70 67 chr4 43628191 43628936 -158699411 - L1MD1 LINE L1 -1097 5145 4382 879 199 28 38 chr4 43628936 43629104 -158699243 + MER6B DNA MER2_type 2 169 -696 2482 82 0 0 chr4 43629104 43629407 -158698940 + AluSx SINE Alu 1 303 -9 879 199 28 38 chr4 43629407 43629449 -158698898 + MER6B DNA MER2_type 169 210 0 3047 203 70 67 chr4 43629449 43630056 -158698291 - L1MD1 LINE L1 -1860 4382 3779 1652 174 7 11 chr4 43630056 43630337 -158698010 - AluJo SINE Alu -7 305 26 1833 163 13 7 chr4 43630442 43630749 -158697598 - AluJo SINE Alu -3 309 1 23 0 0 0 chr4 43630844 43630867 -158697480 + AT_rich Low_complexity Low_complexity 1 23 0 2219 103 0 0 chr4 43631297 43631611 -158696736 - AluSx SINE Alu 0 314 1 29 47 0 0 chr4 43631616 43631659 -158696688 + AT_rich Low_complexity Low_complexity 1 43 0 2513 53 0 3 chr4 43632568 43632869 -158695478 + AluSx SINE Alu 1 300 -12 1387 183 57 23 chr4 43633557 43633722 -158694625 - AluJb SINE Alu -2 310 129 2053 142 0 3 chr4 43633722 43634018 -158694329 - AluSx SINE Alu -13 299 5 1387 183 57 23 chr4 43634018 43634152 -158694195 - AluJb SINE Alu -183 129 1 1949 162 13 7 chr4 43634170 43634478 -158693869 - AluJb SINE Alu -2 310 1 2247 83 0 3 chr4 43634635 43634924 -158693423 - AluY SINE Alu -23 288 1 211 222 32 79 chr4 43635119 43635182 -158693165 - L3 LINE CR1 -2 1575 1516 21 0 0 0 chr4 43635315 43635336 -158693011 + AT_rich Low_complexity Low_complexity 1 21 0 2146 108 50 0 chr4 43635485 43635782 -158692565 - AluSx SINE Alu 0 312 1 29 0 0 0 chr4 43635796 43635825 -158692522 + AT_rich Low_complexity Low_complexity 1 29 0 934 188 12 0 chr4 43636008 43636178 -158692169 - AluSc SINE Alu -5 304 133 200 35 35 0 chr4 43636180 43636209 -158692138 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2090 128 0 0 chr4 43636209 43636490 -158691857 - AluSx SINE Alu -31 281 1 713 188 0 43 chr4 43636598 43636736 -158691611 - FLAM_C SINE Alu -1 132 1 1487 176 79 21 chr4 43637014 43637293 -158691054 - AluJo SINE Alu -17 295 1 1044 195 83 25 chr4 43637479 43637720 -158690627 - AluJo SINE Alu -12 300 46 265 346 12 12 chr4 43638394 43638556 -158689791 + (TATATG)n Simple_repeat Simple_repeat 3 164 0 1037 145 64 51 chr4 43638979 43639213 -158689134 - Tigger7 DNA MER2_type 0 2491 2255 28 29 0 0 chr4 43639326 43639361 -158688986 + AT_rich Low_complexity Low_complexity 1 35 0 331 291 104 80 chr4 43639683 43639972 -158688375 - L1M4 LINE L1 -2225 3921 3626 2282 106 0 0 chr4 43640298 43640599 -158687748 - AluSx SINE Alu -11 301 1 824 201 7 0 chr4 43640605 43640759 -158687588 + Tigger4(Zombi) DNA MER2_type 2574 2728 -3 1958 130 7 11 chr4 43640788 43641072 -158687275 - AluJb SINE Alu -29 283 1 503 171 9 0 chr4 43641794 43641899 -158686448 + CT-rich Low_complexity Low_complexity 3 108 0 5319 20 0 0 chr4 43641906 43642515 -158685832 - L1PA3 LINE L1 0 6155 5547 194 0 0 37 chr4 43642515 43642542 -158685805 + (TTTC)n Simple_repeat Simple_repeat 1 26 0 2189 86 4 14 chr4 43642542 43642822 -158685525 - AluSq SINE Alu -33 280 4 432 0 0 0 chr4 43643302 43643350 -158684997 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 2169 96 0 10 chr4 43643350 43643642 -158684705 - AluSx SINE Alu -23 289 1 709 201 6 41 chr4 43644353 43644522 -158683825 - L1M4 LINE L1 -578 5606 5444 1910 194 49 75 chr4 43644539 43645095 -158683252 - MER74A LTR ERVL -17 541 1 3727 171 54 25 chr4 43645095 43646137 -158682210 - L1M4 LINE L1 -727 5451 4382 21 71 0 0 chr4 43646193 43646235 -158682112 + AT_rich Low_complexity Low_complexity 1 42 0 764 110 9 0 chr4 43646242 43646351 -158681996 - FLAM_C SINE Alu -33 110 1 330 274 0 0 chr4 43646363 43646436 -158681911 - L1M4 LINE L1 -1776 4370 4298 2290 100 0 3 chr4 43646446 43646746 -158681601 - AluSg SINE Alu -11 299 1 1822 113 117 11 chr4 43646764 43647046 -158681301 - AluJb SINE Alu 0 312 1 21 0 0 0 chr4 43647046 43647067 -158681280 + AT_rich Low_complexity Low_complexity 1 21 0 7445 62 12 42 chr4 43647536 43647764 -158680583 - SVA Other Other -520 1385 1152 1546 110 4 9 chr4 43647764 43647992 -158680355 - LTR5 LTR ERVK -741 228 2 7445 62 12 42 chr4 43647992 43649100 -158679247 - SVA Other Other -753 1152 1 180 0 0 0 chr4 43649100 43649120 -158679227 + (GGGAGA)n Simple_repeat Simple_repeat 2 21 0 251 0 0 31 chr4 43649124 43649156 -158679191 + MER51A LTR ERV1 243 273 -361 1645 172 48 0 chr4 43650264 43650556 -158677791 - AluJb SINE Alu 0 305 1 2103 192 112 59 chr4 43650783 43651309 -158677038 - MLT2B3 LTR ERVL 0 554 1 1911 134 0 0 chr4 43652170 43652445 -158675902 - AluSx SINE Alu -3 309 35 316 290 159 9 chr4 43652649 43652756 -158675591 - L2 LINE L2 -5 3267 3145 2330 86 3 3 chr4 43652836 43653166 -158675181 + AluSx SINE Alu 1 312 0 1506 211 42 135 chr4 43653484 43653865 -158674482 - L1MA9 LINE L1 0 6300 5885 7173 52 38 21 chr4 43653865 43655457 -158672890 - SVA Other Other -723 1386 1 1506 211 42 135 chr4 43655457 43655607 -158672740 - L1MA9 LINE L1 -415 5885 5846 844 175 0 29 chr4 43655607 43655744 -158672603 - FLAM_C SINE Alu 0 133 1 1506 211 42 135 chr4 43655744 43655849 -158672498 - L1MA9 LINE L1 -454 5846 5733 233 100 40 60 chr4 43655851 43655901 -158672446 + Alu SINE Alu 250 298 -3 2386 221 117 13 chr4 43655919 43656543 -158671804 + L1MB7 LINE L1 5480 6168 -16 2539 67 0 10 chr4 43656567 43656881 -158671466 + AluY SINE Alu 1 311 0 1416 205 90 59 chr4 43657157 43657339 -158671008 + L1MC5 LINE L1 7251 7426 -535 1977 145 0 13 chr4 43657339 43657643 -158670704 + AluSx SINE Alu 1 300 -12 1416 205 90 59 chr4 43657643 43657972 -158670375 + L1MC5 LINE L1 7426 7778 -183 1689 161 14 10 chr4 43658234 43658526 -158669821 - AluSx SINE Alu -19 293 1 560 254 22 7 chr4 43659173 43659311 -158669036 - MIR SINE MIR -93 169 30 255 311 58 0 chr4 43659308 43659411 -158668936 + MIR SINE MIR 154 262 0 * 21 71 0 0 chr4 43661283 43661325 -158667022 + AT_rich Low_complexity Low_complexity 1 42 0 2263 108 3 19 chr4 43662064 43662380 -158665967 + AluSx SINE Alu 1 311 -1 1184 174 34 34 chr4 43663668 43663903 -158664444 + MER46A DNA MER2_type 2 236 0 21 0 0 0 chr4 43665253 43665274 -158663073 + AT_rich Low_complexity Low_complexity 1 21 0 1667 149 100 0 chr4 43665470 43665739 -158662608 + AluSx SINE Alu 1 296 -16 190 347 137 0 chr4 43665985 43666124 -158662223 - MIR SINE MIR -51 157 32 1085 293 80 27 chr4 43666283 43666733 -158661614 - MLT1J LTR MaLR -37 474 1 406 127 0 0 chr4 43666827 43666890 -158661457 - AluSq SINE Alu -11 300 238 1362 130 0 0 chr4 43666890 43667074 -158661273 - AluSq SINE Alu -129 184 1 1021 259 51 22 chr4 43667248 43667603 -158660744 + MER47A DNA MER2_type 1 365 -1 235 346 38 69 chr4 43667853 43668200 -158660147 + L1MC4a LINE L1 392 727 -5478 1205 201 165 35 chr4 43668214 43668735 -158659612 + L1MC5 LINE L1 7318 7906 -55 1588 130 169 8 chr4 43669174 43669428 -158658919 + AluSg SINE Alu 1 295 -5 1110 192 58 9 chr4 43669668 43669892 -158658455 - MLT2B3 LTR ERVL 0 554 320 1064 268 42 0 chr4 43669900 43670161 -158658186 - MLT1F1 LTR MaLR -293 274 3 244 293 73 0 chr4 43670162 43670244 -158658103 - MIR SINE MIR -24 238 151 1530 247 146 13 chr4 43670251 43670785 -158657562 + MLT1L LTR MaLR 3 607 -8 333 287 41 8 chr4 43670797 43670919 -158657428 - MIR SINE MIR -117 145 20 26 30 0 0 chr4 43671971 43672004 -158656343 + AT_rich Low_complexity Low_complexity 1 33 0 1788 160 29 0 chr4 43672219 43672494 -158655853 - AluSx SINE Alu -20 292 10 209 250 0 40 chr4 43672572 43672648 -158655699 + (TATATG)n Simple_repeat Simple_repeat 5 77 0 2287 112 3 0 chr4 43673362 43673667 -158654680 + AluSp SINE Alu 1 306 -7 1636 93 73 4 chr4 43673691 43673938 -158654409 - L1MA3 LINE L1 0 6305 6042 447 341 141 17 chr4 43674156 43674675 -158653672 + HAL1b LINE L1 118 1504 -648 488 248 40 28 chr4 43675104 43675397 -158652950 + L1MC4a LINE L1 2169 2315 -3902 1557 141 16 4 chr4 43675751 43676000 -158652347 + AluSx SINE Alu 45 296 -16 343 323 52 22 chr4 43676004 43676233 -158652114 + L1MC4a LINE L1 2832 3067 -3148 2268 112 3 0 chr4 43676289 43676593 -158651754 + AluSx SINE Alu 1 305 -7 1663 147 3 67 chr4 43676943 43677257 -158651090 + AluJb SINE Alu 1 294 -18 675 127 18 9 chr4 43678103 43678212 -158650135 + MLT1B LTR MaLR 1 110 -357 2144 146 47 71 chr4 43678212 43678523 -158649824 - MLT2A2 LTR ERVL 0 554 230 2080 107 0 30 chr4 43678523 43678821 -158649526 - AluSx SINE Alu -23 289 1 2144 146 47 71 chr4 43678821 43679046 -158649301 - MLT2A2 LTR ERVL -324 230 1 1369 131 30 102 chr4 43679047 43679352 -158648995 + MLT1B LTR MaLR 108 390 0 181 269 15 45 chr4 43679676 43679743 -158648604 - L3 LINE CR1 -16 1561 1497 281 245 0 41 chr4 43680397 43680495 -158647852 + T-rich Low_complexity Low_complexity 2 95 0 1643 136 8 0 chr4 43680703 43680938 -158647409 + AluJo SINE Alu 1 237 -75 1587 188 32 133 chr4 43680943 43681127 -158647220 + L1MA6 LINE L1 5593 5794 -506 2184 112 3 0 chr4 43681127 43681421 -158646926 + AluSx SINE Alu 1 295 -17 1587 188 32 133 chr4 43681421 43681624 -158646723 + L1MA6 LINE L1 5794 5902 -398 1499 172 40 40 chr4 43681624 43681927 -158646420 - AluJo SINE Alu -7 305 3 1587 188 32 133 chr4 43681927 43682134 -158646213 + L1MA6 LINE L1 5902 6128 -172 1673 128 69 10 chr4 43682145 43682434 -158645913 + AluSq SINE Alu 1 306 -7 2423 58 0 0 chr4 43682435 43682726 -158645621 + AluY SINE Alu 21 311 0 1930 139 63 27 chr4 43683329 43683660 -158644687 + MER61A LTR ERV1 1 343 0 2346 112 0 0 chr4 43683940 43684252 -158644095 + AluSx SINE Alu 1 312 0 192 309 73 0 chr4 43684334 43684402 -158643945 + MIR3 SINE MIR 121 193 -15 1082 94 7 0 chr4 43684637 43684786 -158643561 + AluSg/x SINE Alu 154 303 -9 247 181 60 78 chr4 43684893 43685009 -158643338 + L1MC4a LINE L1 3204 3317 -2898 767 53 21 0 chr4 43685688 43685782 -158642565 - AluS SINE Alu -215 97 2 706 245 106 72 chr4 43685814 43686472 -158641875 + L1MC4a LINE L1 5221 5472 -743 2283 105 0 0 chr4 43686589 43686883 -158641464 + AluSg SINE Alu 1 294 -16 1551 259 101 27 chr4 43687121 43687386 -158640961 - MLT1J LTR MaLR -2 509 265 2130 121 0 7 chr4 43687386 43687691 -158640656 + AluSx SINE Alu 3 305 -7 1551 259 101 27 chr4 43687691 43687899 -158640448 - MLT1J LTR MaLR -246 265 1 1429 119 23 9 chr4 43688167 43688385 -158639962 - AluJb SINE Alu -9 303 83 2121 117 0 0 chr4 43688414 43688696 -158639651 - AluSx SINE Alu -30 282 1 26 0 0 0 chr4 43688698 43688724 -158639623 + AT_rich Low_complexity Low_complexity 1 26 0 368 262 20 74 chr4 43688830 43689032 -158639315 - L1ME4a LINE L1 -194 5927 5737 2481 50 0 3 chr4 43689057 43689355 -158638992 - AluY SINE Alu -14 297 1 377 283 161 49 chr4 43689578 43689907 -158638440 - MLT1L LTR MaLR -241 374 9 23 0 0 0 chr4 43690079 43690102 -158638245 + AT_rich Low_complexity Low_complexity 1 23 0 370 289 25 0 chr4 43690205 43690326 -158638021 - L1ME4a LINE L1 0 6121 5998 2177 112 0 0 chr4 43690393 43690718 -158637629 + AluSx SINE Alu 1 325 0 392 228 0 65 chr4 43690935 43691027 -158637320 + MIR SINE MIR 72 157 -105 615 171 0 9 chr4 43692190 43692301 -158636046 - MER1B DNA MER1_type -187 110 1 488 113 0 0 chr4 43692362 43692433 -158635914 - L1ME4a LINE L1 -223 5898 5828 1014 110 0 7 chr4 43693203 43693339 -158635008 - AluJo SINE Alu -177 135 1 785 215 31 31 chr4 43694022 43694182 -158634165 + MIR SINE MIR 56 218 -44 1875 155 3 3 chr4 43694182 43694486 -158633861 + AluJb SINE Alu 1 304 -8 785 215 31 31 chr4 43694486 43694520 -158633827 + MIR SINE MIR 217 250 -12 2211 91 3 3 chr4 43694582 43694911 -158633436 + AluSx SINE Alu 1 329 0 2006 110 0 21 chr4 43695326 43695617 -158632730 + AluSq SINE Alu 1 285 -28 336 64 0 0 chr4 43695617 43695664 -158632683 + (CA)n Simple_repeat Simple_repeat 2 48 0 604 272 63 66 chr4 43695726 43696013 -158632334 + L2 LINE L2 3028 3313 0 23 0 0 0 chr4 43696404 43696427 -158631920 + AT_rich Low_complexity Low_complexity 1 23 0 1052 295 42 32 chr4 43696855 43697329 -158631018 - MARNA DNA Mariner -98 488 10 21 36 0 0 chr4 43697655 43697683 -158630664 + AT_rich Low_complexity Low_complexity 1 28 0 241 368 24 8 chr4 43698591 43698716 -158629631 + MIR SINE MIR 56 182 -80 287 25 25 0 chr4 43699193 43699233 -158629114 + (GA)n Simple_repeat Simple_repeat 1 41 0 1579 183 13 36 chr4 43700650 43700956 -158627391 - AluJo SINE Alu -13 299 1 25 0 0 0 chr4 43700958 43700983 -158627364 + AT_rich Low_complexity Low_complexity 1 25 0 2092 107 0 0 chr4 43700983 43701264 -158627083 - AluSx SINE Alu -31 281 1 330 355 118 33 chr4 43701848 43702237 -158626110 + L2 LINE L2 987 1408 -1906 210 296 136 30 chr4 43702425 43702557 -158625790 + L2 LINE L2 1791 1936 -1378 711 146 0 0 chr4 43703645 43703755 -158624592 + MSTD LTR MaLR 1 110 -286 1744 140 56 7 chr4 43704852 43705137 -158623210 + AluSg SINE Alu 1 299 -11 2444 55 0 0 chr4 43705497 43705789 -158622558 - AluY SINE Alu -15 296 5 471 257 0 18 chr4 43705905 43706014 -158622333 - L2 LINE L2 0 3313 3207 651 215 23 0 chr4 43706198 43706328 -158622019 - MER94 DNA DNA 0 134 2 289 240 171 0 chr4 43707051 43707180 -158621167 + L1ME4a LINE L1 5754 5904 -217 216 259 86 12 chr4 43707397 43707478 -158620869 - MIR SINE MIR -79 129 43 330 289 144 6 chr4 43707819 43707984 -158620363 - MIR SINE MIR -56 206 18 268 326 155 0 chr4 43708406 43708535 -158619812 - MIR3 SINE MIR -17 191 43 386 110 68 14 chr4 43708737 43708810 -158619537 - AluSg/x SINE Alu -140 160 84 998 157 17 61 chr4 43708810 43709040 -158619307 - AluJo SINE Alu -92 220 1 225 0 0 0 chr4 43709719 43709744 -158618603 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 971 163 0 0 chr4 43709872 43710032 -158618315 + AluSg/x SINE Alu 127 286 -24 1817 139 24 0 chr4 43710037 43710325 -158618022 + AluSx SINE Alu 1 295 -17 433 252 45 96 chr4 43710356 43710689 -158617658 + L1MC5 LINE L1 7611 7926 -35 2204 106 6 0 chr4 43710710 43711021 -158617326 - AluSp SINE Alu 0 313 1 305 147 133 0 chr4 43711973 43712048 -158616299 - L1ME4a LINE L1 -4 6117 6033 406 232 77 50 chr4 43712118 43712299 -158616048 - L1ME4a LINE L1 -187 5934 5749 1089 79 0 0 chr4 43712401 43712541 -158615806 - AluSg1 SINE Alu -169 140 1 1668 206 110 30 chr4 43712784 43713074 -158615273 + Charlie4a DNA MER1_type 1 343 -1618 1927 133 0 17 chr4 43713074 43713374 -158614973 + AluSq SINE Alu 1 295 -18 1668 206 110 30 chr4 43713374 43713545 -158614802 + Charlie4a DNA MER1_type 343 499 -9 269 169 0 92 chr4 43713556 43713621 -158614726 + L2 LINE L2 3254 3312 -1 2347 97 3 0 chr4 43713736 43714047 -158614300 + AluSq SINE Alu 1 312 -1 528 328 138 3 chr4 43714100 43714420 -158613927 - L2 LINE L2 -530 2784 2422 705 177 24 0 chr4 43714587 43714711 -158613636 + MLT1A1 LTR MaLR 239 365 0 4893 111 18 10 chr4 43714986 43715672 -158612675 + LTR8 LTR ERV1 1 691 0 628 234 122 54 chr4 43715686 43715891 -158612456 - MIR SINE MIR -35 227 9 180 0 0 0 chr4 43716800 43716820 -158611527 + (T)n Simple_repeat Simple_repeat 1 20 0 274 342 124 43 chr4 43717441 43717675 -158610672 + L2 LINE L2 3007 3259 -13 1491 153 3 92 chr4 43717710 43718036 -158610311 - AluSq SINE Alu -16 297 1 304 250 16 133 chr4 43718036 43718164 -158610183 + L3 LINE CR1 885 997 -580 257 295 95 33 chr4 43718172 43718382 -158609965 + L2 LINE L2 2813 3035 -237 291 327 29 19 chr4 43718480 43718584 -158609763 - MIR SINE MIR -1 261 157 471 266 8 23 chr4 43718587 43718715 -158609632 - MIR SINE MIR 0 262 137 456 241 139 0 chr4 43718751 43718888 -158609459 - MIR SINE MIR -98 164 9 365 246 30 75 chr4 43718907 43719041 -158609306 - MIR3 SINE MIR -78 130 3 1154 157 127 4 chr4 43719045 43719281 -158609066 - MER58B DNA MER1_type -1 340 76 256 119 24 24 chr4 43719279 43719321 -158609026 + AluSg/x SINE Alu 153 194 -106 * 27 62 0 0 chr4 43719431 43719479 -158608868 + AT_rich Low_complexity Low_complexity 1 48 0 2354 81 0 0 chr4 43719787 43720096 -158608251 + AluSx SINE Alu 1 309 -3 2100 130 0 7 chr4 43720498 43720806 -158607541 - AluSg SINE Alu -4 306 1 407 279 0 10 chr4 43720922 43721026 -158607321 - MIR SINE MIR -6 256 154 1014 99 13 20 chr4 43721029 43721181 -158607166 + AluSq/x SINE Alu 1 151 -161 * 1386 157 0 0 chr4 43721180 43721397 -158606950 + AluSg/x SINE Alu 88 304 -6 21 0 0 0 chr4 43721522 43721543 -158606804 + AT_rich Low_complexity Low_complexity 1 21 0 1890 170 51 48 chr4 43722139 43722534 -158605813 + MSTD LTR MaLR 1 396 0 572 275 54 0 chr4 43722618 43722767 -158605580 + L2 LINE L2 1825 1981 -1333 1595 198 13 0 chr4 43722941 43723249 -158605098 - AluSx SINE Alu 0 312 1 1153 153 0 5 chr4 43723423 43723612 -158604735 - AluSx SINE Alu -124 188 1 249 303 28 37 chr4 43723636 43723745 -158604602 + MIR SINE MIR 154 261 -1 1810 99 84 0 chr4 43723973 43724246 -158604101 - AluSx SINE Alu -16 296 1 2064 131 3 0 chr4 43724904 43725216 -158603131 + AluSq SINE Alu 1 313 0 1746 159 13 25 chr4 43725236 43725550 -158602797 + AluJo SINE Alu 1 310 -2 24 0 0 0 chr4 43725746 43725770 -158602577 + AT_rich Low_complexity Low_complexity 1 24 0 1041 80 0 20 chr4 43725770 43725921 -158602426 + AluY SINE Alu 163 310 -1 28 0 0 0 chr4 43725921 43725949 -158602398 + AT_rich Low_complexity Low_complexity 1 28 0 289 241 35 11 chr4 43726070 43726157 -158602190 + MIR SINE MIR 56 145 -63 1689 183 30 19 chr4 43726336 43726697 -158601650 + MLT1A1 LTR MaLR 1 365 0 1927 112 58 10 chr4 43728117 43728411 -158599936 - AluSg SINE Alu -2 308 1 2006 114 0 0 chr4 43728840 43729120 -158599227 - AluSq SINE Alu -27 286 7 261 148 123 49 chr4 43729135 43729216 -158599131 - MER5C DNA MER1_type -169 155 69 724 198 108 78 chr4 43729216 43729574 -158598773 - LTR56 LTR ERV1 0 445 100 2327 191 74 7 chr4 43729584 43730046 -158598301 - LTR22 LTR ERVK -16 493 1 511 157 35 25 chr4 43730046 43730155 -158598192 - LTR56 LTR ERV1 -318 119 1 184 339 65 0 chr4 43730156 43730218 -158598129 - MER5C DNA MER1_type -253 71 6 306 0 0 0 chr4 43730665 43730699 -158597648 + (TA)n Simple_repeat Simple_repeat 2 35 0 2153 109 3 3 chr4 43730699 43731003 -158597344 - AluSx SINE Alu -8 304 1 387 268 101 48 chr4 43731218 43731386 -158596961 + MIR SINE MIR 85 261 -1 1869 188 133 40 chr4 43731415 43731545 -158596802 + MER34 LTR ERV1 1 118 -424 2269 90 3 0 chr4 43731545 43731846 -158596501 + AluSp SINE Alu 1 302 -11 1869 188 133 40 chr4 43731846 43732211 -158596136 + MER34 LTR ERV1 118 542 0 3115 160 17 96 chr4 43732249 43732338 -158596009 - LTR8 LTR ERV1 -1 690 596 2099 110 0 7 chr4 43732338 43732638 -158595709 + AluSg1 SINE Alu 1 298 -11 3115 160 17 96 chr4 43732638 43733297 -158595050 - LTR8 LTR ERV1 -95 596 1 239 53 18 70 chr4 43733880 43733937 -158594410 + (GGGAGA)n Simple_repeat Simple_repeat 1 54 0 469 305 79 6 chr4 43734075 43734252 -158594095 - MER91A DNA MER1_type -6 190 1 4056 113 10 20 chr4 43734526 43735128 -158593219 - MER4A LTR ERV1 -4 596 1 4357 75 11 0 chr4 43735164 43735712 -158592635 - MER41A LTR ERV1 0 554 1 1322 132 0 5 chr4 43736434 43736623 -158591724 + MER4D LTR ERV1 1 188 -715 2170 108 13 3 chr4 43736672 43736978 -158591369 + AluSx SINE Alu 1 309 -3 1220 140 33 0 chr4 43737003 43737207 -158591140 + MER4D LTR ERV1 157 370 -502 703 84 53 0 chr4 43737207 43737302 -158591045 - AluJ/FLAM SINE Alu -212 100 1 2746 151 32 47 chr4 43737302 43737837 -158590510 + MER4D LTR ERV1 367 893 -10 390 305 46 15 chr4 43738042 43738173 -158590174 + L2 LINE L2 3137 3271 -1 473 285 8 23 chr4 43738251 43738381 -158589966 + MER5A DNA MER1_type 37 164 -25 1603 86 133 0 chr4 43738403 43738637 -158589710 + LTR9 LTR ERV1 1 265 -347 1824 109 3 78 chr4 43738637 43738957 -158589390 + AluSx SINE Alu 1 296 -16 1446 139 68 0 chr4 43739076 43739328 -158589019 - AluJo SINE Alu -35 277 9 447 285 13 20 chr4 43739497 43739648 -158588699 + L2 LINE L2 2837 2986 -286 347 295 29 19 chr4 43739660 43739765 -158588582 + MER5B DNA MER1_type 19 124 -54 21 0 0 0 chr4 43741405 43741426 -158586921 + AT_rich Low_complexity Low_complexity 1 21 0 181 327 56 9 chr4 43741801 43741908 -158586439 - L2 LINE L2 -251 3021 2910 631 234 7 122 chr4 43742566 43742844 -158585503 + MIR SINE MIR 5 250 -12 306 181 244 87 chr4 43743945 43744072 -158584275 + MER5B DNA MER1_type 2 148 -41 183 271 0 0 chr4 43744607 43744655 -158583692 - MIR SINE MIR -116 146 99 343 200 86 0 chr4 43745006 43745076 -158583271 - MER63B DNA MER1_type 0 436 361 * 887 217 22 57 chr4 43745075 43745305 -158583042 - MER63B DNA MER1_type -214 222 1 608 292 96 19 chr4 43745329 43745537 -158582810 + L1ME4a LINE L1 5571 5814 -307 1833 134 27 0 chr4 43745537 43745836 -158582511 - AluJb SINE Alu -5 307 1 608 292 96 19 chr4 43745836 43745949 -158582398 + L1ME4a LINE L1 5814 5917 -204 2407 47 0 19 chr4 43746546 43746863 -158581484 - AluY SINE Alu 0 311 1 463 253 25 101 chr4 43746864 43747062 -158581285 - MER5A DNA MER1_type -5 184 2 264 127 0 0 chr4 43747108 43747163 -158581184 + (TG)n Simple_repeat Simple_repeat 2 56 0 1970 118 3 10 chr4 43748572 43748868 -158579479 + AluSx SINE Alu 1 294 -18 2295 99 0 0 chr4 43750518 43750812 -158577535 + AluSg1 SINE Alu 1 294 -15 290 164 0 55 chr4 43751132 43751187 -158577160 - MER58 DNA MER1_type -285 56 5 873 165 0 0 chr4 43751886 43752019 -158576328 - FLAM_C SINE Alu 0 133 1 633 189 0 39 chr4 43752281 43752408 -158575939 - L1ME3A LINE L1 0 6170 6049 2500 83 3 3 chr4 43752437 43752750 -158575597 + AluSq SINE Alu 1 313 0 1862 155 0 26 chr4 43752829 43753139 -158575208 + AluJb SINE Alu 9 310 -2 227 255 32 32 chr4 43753260 43753354 -158574993 + MIR SINE MIR 31 124 -138 297 239 0 34 chr4 43753388 43753476 -158574871 + L2 LINE L2 3188 3272 0 2199 96 7 10 chr4 43753638 43753931 -158574416 + AluSc SINE Alu 1 292 -17 2121 121 0 7 chr4 43754300 43754607 -158573740 + AluSx SINE Alu 1 305 -7 2386 93 3 0 chr4 43756727 43757027 -158571320 + AluSx SINE Alu 1 301 -11 578 280 5 31 chr4 43757050 43757243 -158571104 - MIR SINE MIR -72 190 3 1623 187 28 3 chr4 43757326 43757615 -158570732 + AluJb SINE Alu 1 296 -16 2206 126 0 0 chr4 43757625 43757919 -158570428 + AluSx SINE Alu 1 294 -18 180 0 0 0 chr4 43757922 43757942 -158570405 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 872 157 0 29 chr4 43758005 43758145 -158570202 + AluJo SINE Alu 1 136 -176 21 0 0 0 chr4 43758145 43758166 -158570181 + AT_rich Low_complexity Low_complexity 1 21 0 434 250 29 0 chr4 43758508 43758612 -158569735 - MIR SINE MIR -77 185 79 2148 117 3 3 chr4 43758738 43759045 -158569302 + AluJo SINE Alu 1 307 -5 328 344 46 7 chr4 43759503 43759654 -158568693 - MIR SINE MIR -73 189 33 459 0 0 0 chr4 43760076 43760127 -158568220 + (TG)n Simple_repeat Simple_repeat 2 52 0 751 277 53 59 chr4 43762425 43762731 -158565616 + LTR33 LTR ERVL 1 305 -216 2218 77 0 14 chr4 43762731 43763060 -158565287 + AluY SINE Alu 1 325 0 751 277 53 59 chr4 43763060 43763276 -158565071 + LTR33 LTR ERVL 305 521 0 383 275 127 11 chr4 43763536 43763725 -158564622 + L1ME3A LINE L1 5258 5468 -694 365 138 4 0 chr4 43763735 43763798 -158564549 + Alu SINE Alu 1 49 -253 1748 81 5 0 chr4 43763798 43764021 -158564326 + AluSg/x SINE Alu 87 310 -2 1181 160 0 0 chr4 43764025 43764200 -158564147 + AluSg/x SINE Alu 138 312 0 1004 290 83 42 chr4 43764203 43764659 -158563688 + L1ME3A LINE L1 5477 5970 -200 2405 79 0 0 chr4 43764659 43764950 -158563397 + AluSc SINE Alu 2 292 -17 1004 290 83 42 chr4 43764950 43765158 -158563189 + L1ME3A LINE L1 5970 6168 -2 684 232 127 6 chr4 43765162 43765343 -158563004 + MIR SINE MIR 28 230 -32 2304 98 3 0 chr4 43765979 43766276 -158562071 + AluY SINE Alu 1 298 -13 404 374 34 0 chr4 43767419 43767598 -158560749 - MIR SINE MIR -50 212 28 363 270 128 7 chr4 43768077 43768225 -158560122 - MIR3 SINE MIR -24 184 19 2251 122 0 0 chr4 43768318 43768622 -158559725 + AluSx SINE Alu 2 305 -7 300 295 115 19 chr4 43768999 43769155 -158559192 - L1ME4a LINE L1 -111 6010 5840 186 43 0 0 chr4 43769265 43769288 -158559059 + (TG)n Simple_repeat Simple_repeat 1 23 0 222 233 0 0 chr4 43769288 43769348 -158558999 + (CATA)n Simple_repeat Simple_repeat 1 60 0 406 299 176 0 chr4 43769385 43769572 -158558775 - MIR SINE MIR -31 231 12 2174 113 14 0 chr4 43769705 43769998 -158558349 - AluSx SINE Alu -15 297 1 209 321 0 0 chr4 43770354 43770410 -158557937 + GA-rich Low_complexity Low_complexity 2 57 0 2291 102 3 10 chr4 43770765 43771079 -158557268 + AluSx SINE Alu 1 312 0 232 100 0 0 chr4 43771910 43771940 -158556407 + Alu SINE Alu 259 288 -14 22 35 0 0 chr4 43771947 43771976 -158556371 + AT_rich Low_complexity Low_complexity 1 29 0 1848 152 20 7 chr4 43772520 43772822 -158555525 - AluJb SINE Alu -6 306 1 354 61 0 0 chr4 43773163 43773212 -158555135 + (TG)n Simple_repeat Simple_repeat 2 50 0 240 258 100 84 chr4 43773459 43773649 -158554698 - MLT1L LTR MaLR -226 389 197 725 209 33 0 chr4 43773864 43774017 -158554330 + MER106B DNA MER1_type 902 1059 0 1757 135 0 38 chr4 43774332 43774620 -158553727 - AluSx SINE Alu -1 311 35 229 253 36 48 chr4 43774915 43774998 -158553349 + MIR SINE MIR 110 191 -71 299 127 0 18 chr4 43776416 43776471 -158551876 + (TC)n Simple_repeat Simple_repeat 1 54 0 2169 122 3 0 chr4 43776841 43777137 -158551210 - AluSx SINE Alu -15 297 1 615 170 9 0 chr4 43777482 43777588 -158550759 - FLAM_A SINE Alu 0 142 36 202 182 0 0 chr4 43778564 43778597 -158549750 + polypyrimidine Low_complexity Low_complexity 2 34 0 2064 123 31 0 chr4 43778731 43779023 -158549324 + AluSx SINE Alu 5 305 -7 2240 122 0 0 chr4 43779267 43779578 -158548769 + AluSx SINE Alu 1 311 -1 225 280 189 8 chr4 43780456 43780588 -158547759 - L1ME4a LINE L1 -1 6120 5965 393 304 95 6 chr4 43781775 43781943 -158546404 - MIR3 SINE MIR -3 205 23 24 32 0 0 chr4 43782008 43782039 -158546308 + AT_rich Low_complexity Low_complexity 1 31 0 2423 87 3 0 chr4 43782210 43782510 -158545837 + AluSx SINE Alu 1 301 -11 239 277 24 24 chr4 43782774 43782857 -158545490 - L2 LINE L2 -222 3050 2968 21 0 0 0 chr4 43783687 43783708 -158544639 + AT_rich Low_complexity Low_complexity 1 21 0 15158 122 24 24 chr4 43784417 43786554 -158541793 + Tigger1 DNA MER2_type 24 2160 -258 840 161 129 0 chr4 43786554 43786709 -158541638 - FAM SINE Alu 0 175 1 15158 122 24 24 chr4 43786709 43786848 -158541499 + Tigger1 DNA MER2_type 2160 2303 -115 2468 82 3 0 chr4 43786848 43787152 -158541195 - AluSp SINE Alu -8 305 1 15158 122 24 24 chr4 43787152 43787269 -158541078 + Tigger1 DNA MER2_type 2302 2418 0 445 311 49 29 chr4 43787306 43787550 -158540797 - L1MC4a LINE L1 -1983 5825 5577 643 233 39 0 chr4 43787557 43787686 -158540661 + MER97b DNA MER1_type? 13 146 -907 1233 216 64 20 chr4 43787695 43787991 -158540356 + MER97b DNA MER1_type? 389 697 -356 1035 172 6 0 chr4 43788001 43788158 -158540189 - AluJb SINE Alu -23 289 132 1404 173 116 7 chr4 43788189 43788466 -158539881 - AluSx SINE Alu -5 307 1 493 209 47 34 chr4 43788506 43788654 -158539693 + MER97a DNA MER1_type? 745 894 0 736 266 10 14 chr4 43788925 43789132 -158539215 + MIR SINE MIR 26 231 -31 182 328 0 0 chr4 43789261 43789319 -158539028 - MIR SINE MIR -154 108 51 2521 84 3 0 chr4 43789327 43789637 -158538710 + AluSp SINE Alu 3 313 0 2218 109 26 0 chr4 43789957 43790261 -158538086 + AluSx SINE Alu 1 312 0 240 254 0 30 chr4 43790544 43790611 -158537736 + MIR3 SINE MIR 107 171 -37 2029 139 7 0 chr4 43791050 43791372 -158536975 + AluSx SINE Alu 1 324 0 347 267 0 0 chr4 43791521 43791596 -158536751 - MIR SINE MIR -180 82 8 2484 40 27 0 chr4 43791596 43791893 -158536454 + AluY SINE Alu 1 305 -6 2021 156 24 9 chr4 43792057 43792391 -158535956 + MER2 DNA MER2_type 1 339 -6 778 239 61 57 chr4 43792521 43792560 -158535787 - Charlie8 DNA MER1_type -93 248 211 1733 169 45 10 chr4 43792560 43792726 -158535621 - AluJo SINE Alu -12 300 118 183 42 0 0 chr4 43792726 43792750 -158535597 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1733 169 45 10 chr4 43792750 43792873 -158535474 - AluJo SINE Alu -194 118 1 778 239 61 57 chr4 43792873 43792919 -158535428 - Charlie8 DNA MER1_type -130 211 167 1785 234 64 36 chr4 43792919 43793453 -158534894 - MLT1H LTR MaLR 0 549 1 778 239 61 57 chr4 43793453 43793613 -158534734 - Charlie8 DNA MER1_type -174 167 1 202 313 188 0 chr4 43793688 43793800 -158534547 - L2 LINE L2 -1 3271 3139 2334 113 33 30 chr4 43793950 43794313 -158534034 + THE1B LTR MaLR 1 364 0 1930 152 41 0 chr4 43794620 43794910 -158533437 - AluSq SINE Alu -11 302 1 204 40 0 0 chr4 43795022 43795047 -158533300 + (CA)n Simple_repeat Simple_repeat 1 25 0 1932 136 35 32 chr4 43795120 43795430 -158532917 - AluJo SINE Alu -1 311 1 2201 104 0 0 chr4 43796064 43796352 -158531995 - AluSc SINE Alu -21 288 1 784 184 35 0 chr4 43796786 43796927 -158531420 + FAM SINE Alu 22 167 -18 224 326 22 0 chr4 43796964 43797056 -158531291 + MIR SINE MIR 132 225 -37 2284 107 10 3 chr4 43797466 43797775 -158530572 + AluSx SINE Alu 1 311 -1 1592 180 20 36 chr4 43798415 43798721 -158529626 + AluJb SINE Alu 12 312 0 302 335 138 13 chr4 43798743 43798895 -158529452 + MIR SINE MIR 17 187 -75 2087 114 137 22 chr4 43799149 43799190 -158529157 - MSTA LTR MaLR 0 428 393 2359 91 0 26 chr4 43799190 43799498 -158528849 + AluSg SINE Alu 1 300 -10 2087 114 137 22 chr4 43799498 43799815 -158528532 - MSTA LTR MaLR -35 393 29 2171 125 0 7 chr4 44000158 44000462 -158327885 - AluSx SINE Alu -10 302 1 266 289 58 16 chr4 44000533 44000654 -158327693 + MIR SINE MIR 22 147 -61 247 238 56 63 chr4 44000701 44000827 -158327520 + L2 LINE L2 2585 2709 -605 1920 105 19 0 chr4 44000835 44001093 -158327254 + AluSx SINE Alu 1 263 -49 520 273 54 69 chr4 44001465 44001478 -158326869 - L2 LINE L2 0 3313 3301 2292 102 0 0 chr4 44001478 44001772 -158326575 - AluSq SINE Alu -19 294 1 520 273 54 69 chr4 44001772 44002092 -158326255 - L2 LINE L2 -12 3301 2985 273 71 0 0 chr4 44002253 44002295 -158326052 + AluSx SINE Alu 260 301 -1 284 263 25 0 chr4 44002634 44002714 -158325633 + MIR SINE MIR 24 105 -157 662 288 34 5 chr4 44002739 44002944 -158325403 - MER46C DNA MER2_type -13 325 115 1773 148 48 14 chr4 44002963 44003098 -158325249 + AluSx SINE Alu 1 130 -182 2271 89 16 3 chr4 44003098 44003401 -158324946 + AluSq SINE Alu 1 307 -6 1773 148 48 14 chr4 44003401 44003555 -158324792 + AluSx SINE Alu 130 300 -12 202 154 0 39 chr4 44003555 44003607 -158324740 + GA-rich Low_complexity Low_complexity 1 50 0 180 77 0 0 chr4 44003898 44003924 -158324423 + (T)n Simple_repeat Simple_repeat 1 26 0 224 271 0 0 chr4 44004202 44004261 -158324086 - L2 LINE L2 -23 3249 3191 353 258 100 8 chr4 44004581 44004701 -158323646 - L2 LINE L2 -5 3267 3137 2124 117 3 0 chr4 44004733 44005039 -158323308 + AluSx SINE Alu 1 307 0 1380 77 0 0 chr4 44005201 44005371 -158322976 + AluSg/x SINE Alu 140 309 -3 378 292 35 77 chr4 44005371 44005678 -158322669 - L2 LINE L2 -255 3058 2761 198 256 64 13 chr4 44005949 44006027 -158322320 + MIR SINE MIR 53 134 -128 365 136 17 0 chr4 44006312 44006371 -158321976 + U7 snRNA snRNA 3 62 -1 180 0 0 0 chr4 44006386 44006406 -158321941 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr4 44006596 44006617 -158321730 + AT_rich Low_complexity Low_complexity 1 21 0 1518 158 82 14 chr4 44006781 44007060 -158321287 - AluJo SINE Alu -14 298 1 213 219 41 14 chr4 44007232 44007305 -158321042 - L2 LINE L2 -528 2786 2712 714 179 114 0 chr4 44007305 44007445 -158320902 - MLT1B LTR MaLR 0 390 235 829 236 121 73 chr4 44007452 44007626 -158320721 - L2 LINE L2 -33 3280 3116 1508 116 31 18 chr4 44007626 44007850 -158320497 + AluJb SINE Alu 84 310 -2 829 236 121 73 chr4 44007850 44008029 -158320318 - L2 LINE L2 -197 3116 2947 2941 131 33 2 chr4 44008029 44008480 -158319867 - MER4C LTR ERV1 0 465 1 829 236 121 73 chr4 44008480 44008672 -158319675 - L2 LINE L2 -366 2947 2702 1808 147 73 50 chr4 44008672 44008928 -158319419 - MLT1B LTR MaLR 0 390 121 2031 107 13 44 chr4 44008928 44009245 -158319102 - AluSx SINE Alu -5 307 1 1808 147 73 50 chr4 44009245 44009369 -158318978 - MLT1B LTR MaLR -269 121 1 829 236 121 73 chr4 44009369 44009442 -158318905 - L2 LINE L2 -611 2702 2634 1123 240 72 26 chr4 44009442 44009746 -158318601 + MLT1F1 LTR MaLR 248 565 -2 360 246 97 30 chr4 44009931 44010065 -158318282 - L1ME3A LINE L1 -1 6169 6027 1743 112 14 41 chr4 44010152 44010201 -158318146 - L1MB3 LINE L1 -2 6181 6132 2107 138 0 0 chr4 44010201 44010491 -158317856 - AluSx SINE Alu -22 290 1 1743 112 14 41 chr4 44010491 44010736 -158317611 - L1MB3 LINE L1 -51 6132 5895 26 30 0 0 chr4 44010750 44010783 -158317564 + AT_rich Low_complexity Low_complexity 1 33 0 844 267 22 13 chr4 44011125 44011357 -158316990 - MIR SINE MIR -12 250 17 665 166 136 18 chr4 44011357 44011526 -158316821 - MER5A DNA MER1_type 0 189 1 903 119 0 8 chr4 44011900 44012034 -158316313 + FLAM_A SINE Alu 1 133 0 1967 153 3 0 chr4 44012227 44012528 -158315819 - AluSx SINE Alu -10 302 1 936 232 33 25 chr4 44012922 44013163 -158315184 + MLT1L LTR MaLR 45 287 -328 2569 69 0 0 chr4 44013182 44013486 -158314861 - AluY SINE Alu -7 304 1 882 103 0 22 chr4 44014244 44014380 -158313967 + FLAM_C SINE Alu 1 133 0 287 252 153 9 chr4 44014935 44015046 -158313301 - L2 LINE L2 -2 3270 3144 2371 109 0 0 chr4 44015066 44015370 -158312977 + AluSx SINE Alu 1 304 -8 191 317 125 0 chr4 44015882 44016002 -158312345 + L2 LINE L2 3179 3313 0 2222 121 10 0 chr4 44016011 44016317 -158312030 - AluSg SINE Alu -1 309 1 21 0 0 0 chr4 44017015 44017036 -158311311 + AT_rich Low_complexity Low_complexity 1 21 0 785 251 20 20 chr4 44017213 44017408 -158310939 + MER58A DNA MER1_type 30 224 0 509 284 58 36 chr4 44017408 44017633 -158310714 + MIR SINE MIR 31 260 -2 29 0 0 0 chr4 44017641 44017670 -158310677 + AT_rich Low_complexity Low_complexity 1 29 0 1932 123 7 7 chr4 44017674 44017951 -158310396 - AluSx SINE Alu -10 302 26 481 278 114 13 chr4 44018477 44018659 -158309688 + MIR SINE MIR 13 224 -38 1810 162 43 13 chr4 44018659 44018962 -158309385 + AluJb SINE Alu 1 312 0 481 278 114 13 chr4 44018962 44019006 -158309341 + MIR SINE MIR 224 262 0 1885 106 15 103 chr4 44019738 44020078 -158308269 - AluJb SINE Alu -2 310 1 1728 170 35 0 chr4 44020251 44020539 -158307808 - AluJb SINE Alu -14 298 1 22 35 0 0 chr4 44020546 44020575 -158307772 + AT_rich Low_complexity Low_complexity 1 29 0 2045 189 13 57 chr4 44020575 44021047 -158307300 + L1MB5 LINE L1 5724 6174 0 920 139 0 7 chr4 44021053 44021190 -158307157 + AluJo SINE Alu 1 136 -176 270 0 0 0 chr4 44021330 44021360 -158306987 + (A)n Simple_repeat Simple_repeat 1 30 0 525 144 0 0 chr4 44021786 44021876 -158306471 + L1MA5A LINE L1 6206 6295 -2 2392 89 7 0 chr4 44021948 44022250 -158306097 + AluSp SINE Alu 1 304 -9 215 30 0 30 chr4 44022349 44022382 -158305965 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1686 146 91 0 chr4 44022591 44022866 -158305481 + AluJo SINE Alu 1 300 -12 2312 100 3 6 chr4 44023040 44023351 -158304996 + AluSq SINE Alu 2 311 -2 192 77 0 0 chr4 44023865 44023891 -158304456 + (TCTCCC)n Simple_repeat Simple_repeat 1 26 0 1049 194 5 5 chr4 44024087 44024278 -158304069 - AluJ SINE Alu -9 303 113 817 131 16 0 chr4 44024288 44024410 -158303937 - AluJ SINE Alu -177 135 12 400 225 26 113 chr4 44024492 44024643 -158303704 + L2 LINE L2 3172 3309 -4 2148 121 10 13 chr4 44025096 44025402 -158302945 + AluSx SINE Alu 1 305 -7 187 293 61 10 chr4 44026041 44026140 -158302207 + MIR SINE MIR 80 183 -79 1365 158 73 12 chr4 44026386 44026632 -158301715 + AluJo SINE Alu 16 276 -36 1674 77 0 5 chr4 44026632 44026840 -158301507 - AluSg/x SINE Alu -9 301 95 1769 129 8 0 chr4 44026940 44027181 -158301166 - AluSg SINE Alu -67 243 1 351 175 0 0 chr4 44027196 44027253 -158301094 + MER3 DNA MER1_type 153 209 0 282 232 0 0 chr4 44027210 44027266 -158301081 - MER3 DNA MER1_type -119 90 35 * 401 270 19 116 chr4 44027276 44027399 -158300948 - MER117 DNA MER1_type -3 194 99 1578 181 7 4 chr4 44027399 44027676 -158300671 + AluJb SINE Alu 1 278 -34 401 270 19 116 chr4 44027676 44027767 -158300580 - MER117 DNA MER1_type -98 99 1 2356 107 0 0 chr4 44028583 44028891 -158299456 - AluY SINE Alu -2 309 2 2451 83 3 3 chr4 44028892 44029193 -158299154 - AluSc SINE Alu -8 301 1 240 222 0 0 chr4 44029208 44029262 -158299085 + T-rich Low_complexity Low_complexity 1 54 0 1806 173 0 10 chr4 44029734 44030034 -158298313 + AluSx SINE Alu 1 297 -15 975 146 11 54 chr4 44030034 44030219 -158298128 + AluSg/x SINE Alu 132 308 -2 410 200 35 0 chr4 44030443 44030528 -158297819 + MER58C DNA MER1_type 36 123 -92 1228 157 22 26 chr4 44030537 44030766 -158297581 + AluJb SINE Alu 85 312 0 357 200 130 0 chr4 44030768 44030868 -158297479 + MER58C DNA MER1_type 103 215 0 1351 135 4 82 chr4 44031924 44032168 -158296179 - AluSx SINE Alu -87 225 1 802 100 0 0 chr4 44032535 44032635 -158295712 + AluJb SINE Alu 133 232 -80 471 283 142 30 chr4 44032936 44033169 -158295178 + MIR SINE MIR 2 260 -2 808 190 46 0 chr4 44033247 44033421 -158294926 - MER53 DNA DNA -7 182 1 1459 151 4 54 chr4 44033434 44033658 -158294689 - AluJb SINE Alu -4 308 97 2275 111 0 0 chr4 44033658 44033955 -158294392 - AluSq SINE Alu -16 297 1 1459 151 4 54 chr4 44033955 44033988 -158294359 - AluJb SINE Alu -215 97 64 2570 53 0 3 chr4 44034341 44034644 -158293703 + AluY SINE Alu 1 302 -9 400 306 21 72 chr4 44034657 44034892 -158293455 + MIR SINE MIR 40 262 0 192 271 0 0 chr4 44034902 44034950 -158293397 + MIR3 SINE MIR 161 208 0 2298 74 3 59 chr4 44035056 44035235 -158293112 - AluSx SINE Alu -7 305 150 2229 106 3 6 chr4 44035235 44035546 -158292801 - AluSg SINE Alu 0 310 1 2298 74 3 59 chr4 44035546 44035689 -158292658 - AluSx SINE Alu -162 150 1 1678 123 15 22 chr4 44036406 44036675 -158291672 - AluSx SINE Alu -2 310 44 1374 157 13 17 chr4 44036790 44036966 -158291381 - AluJo SINE Alu -2 310 134 1514 150 91 15 chr4 44036966 44037240 -158291107 - AluJb SINE Alu -17 295 1 1374 157 13 17 chr4 44037240 44037299 -158291048 - AluJo SINE Alu -178 134 76 1003 151 0 70 chr4 44037514 44037700 -158290647 - FRAM SINE Alu -5 171 1 2385 95 0 0 chr4 44038017 44038311 -158290036 - AluSc SINE Alu -13 296 3 1853 149 14 11 chr4 44038316 44038624 -158289723 - AluSx SINE Alu 0 309 1 201 121 0 0 chr4 44038879 44038912 -158289435 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 2214 78 7 20 chr4 44039095 44039391 -158288956 + AluSx SINE Alu 1 292 -20 1754 148 55 0 chr4 44039392 44039663 -158288684 + AluJb SINE Alu 1 286 -26 671 241 75 30 chr4 44040511 44040710 -158287637 + MER3 DNA MER1_type 1 208 -1 1843 172 0 7 chr4 44041626 44041917 -158286430 + AluJb SINE Alu 2 290 -22 752 154 0 70 chr4 44041920 44042063 -158286284 + AluJo SINE Alu 1 133 -169 315 164 0 0 chr4 44042809 44042870 -158285477 + (CA)n Simple_repeat Simple_repeat 2 62 0 906 117 0 29 chr4 44042953 44043090 -158285257 + AluJo SINE Alu 1 133 -169 2203 122 0 10 chr4 44043345 44043656 -158284691 - AluSx SINE Alu -4 308 1 961 201 6 0 chr4 44044104 44044268 -158284079 + AluJo SINE Alu 133 297 -15 1941 127 53 23 chr4 44044270 44044570 -158283777 + AluSx SINE Alu 1 309 -3 1969 120 17 21 chr4 44044669 44044993 -158283354 + AluSg SINE Alu 1 310 0 965 132 0 0 chr4 44045917 44046046 -158282301 + AluSq/x SINE Alu 1 129 -184 242 0 0 0 chr4 44046052 44046081 -158282266 - Alu SINE Alu -33 267 239 961 97 0 0 chr4 44046181 44046305 -158282042 + Alu SINE Alu 176 299 -12 453 256 78 96 chr4 44046343 44046613 -158281734 - L2 LINE L2 -3 3269 3005 2028 125 10 14 chr4 44046825 44047121 -158281226 - AluSq SINE Alu -17 296 2 578 327 67 7 chr4 44047129 44047429 -158280918 - L2 LINE L2 -573 2741 2424 853 244 5 10 chr4 44047464 44047665 -158280682 - MIR SINE MIR -43 219 20 2377 108 0 13 chr4 44047679 44047995 -158280352 - AluSx SINE Alu 0 312 1 259 285 24 85 chr4 44048022 44048187 -158280160 - L2 LINE L2 -890 2424 2270 342 96 0 0 chr4 44049219 44049271 -158279076 + MADE1 DNA Mariner 1 52 -28 781 219 12 0 chr4 44049358 44049527 -158278820 - MIR SINE MIR -43 219 49 294 114 0 0 chr4 44049527 44049571 -158278776 + MADE1 DNA Mariner 37 80 0 1924 151 0 29 chr4 44050446 44050758 -158277589 - AluJb SINE Alu -9 303 1 3044 171 34 109 chr4 44050758 44051177 -158277170 - L1M4 LINE L1 -1019 5127 4678 2233 105 0 3 chr4 44051177 44051462 -158276885 + AluSp SINE Alu 1 326 0 221 48 48 24 chr4 44051462 44051504 -158276843 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 3044 171 34 109 chr4 44051504 44051826 -158276521 - L1M4 LINE L1 -1468 4678 4459 853 160 0 0 chr4 44051826 44051957 -158276390 - FLAM_C SINE Alu 0 133 3 3044 171 34 109 chr4 44051957 44052095 -158276252 - L1M4 LINE L1 -1687 4459 4312 2320 107 48 20 chr4 44052383 44052737 -158275610 - THE1B LTR MaLR 0 364 1 11713 83 20 10 chr4 44052737 44053877 -158274470 - THE1B-int LTR MaLR 0 1580 418 2259 112 3 3 chr4 44053877 44054180 -158274167 + AluSq SINE Alu 1 303 -10 11713 83 20 10 chr4 44054180 44054603 -158273744 - THE1B-int LTR MaLR -1162 418 1 350 70 0 0 chr4 44054603 44054646 -158273701 - THE1B LTR MaLR 0 364 322 * 506 221 6 76 chr4 44054642 44054814 -158273533 + MER63 DNA MER1_type 894 1053 -9 273 239 219 7 chr4 44054864 44055019 -158273328 + MIR SINE MIR 20 207 -55 2360 100 0 22 chr4 44056082 44056402 -158271945 + AluSq SINE Alu 1 313 0 332 299 84 7 chr4 44056449 44056603 -158271744 + MIR SINE MIR 89 254 -8 447 197 33 16 chr4 44056621 44056745 -158271602 + MIR3 SINE MIR 75 205 -3 1717 148 0 86 chr4 44057525 44057863 -158270484 + AluSx SINE Alu 3 311 -1 256 147 0 59 chr4 44057887 44057955 -158270392 + (CATATA)n Simple_repeat Simple_repeat 4 67 0 231 280 0 32 chr4 44057955 44058048 -158270299 + L1MC4 LINE L1 6614 6703 -1339 338 216 26 9 chr4 44058058 44058174 -158270173 + (TA)n Simple_repeat Simple_repeat 2 119 0 947 119 77 0 chr4 44058563 44058706 -158269641 - AluJb SINE Alu -70 242 89 1692 142 125 40 chr4 44058781 44058998 -158269349 - MLT1B LTR MaLR -2 388 127 1900 141 0 11 chr4 44058998 44059318 -158269029 - AluJb SINE Alu 0 317 1 1692 142 125 40 chr4 44059318 44059452 -158268895 - MLT1B LTR MaLR -263 127 6 1096 64 0 83 chr4 44060811 44060967 -158267380 - AluSp SINE Alu -19 294 152 2150 110 10 10 chr4 44061216 44061526 -158266821 + AluSg SINE Alu 1 310 0 303 336 0 0 chr4 44062010 44062120 -158266227 + MIR SINE MIR 153 262 0 1903 150 24 3 chr4 44062155 44062449 -158265898 + AluJb SINE Alu 1 300 -12 1693 174 6 29 chr4 44062513 44062824 -158265523 + AluSx SINE Alu 9 312 0 1097 83 0 0 chr4 44062913 44063046 -158265301 + AluSq/x SINE Alu 1 133 -180 1970 80 4 0 chr4 44063055 44063332 -158265015 + AluY SINE Alu 34 311 0 2299 98 13 3 chr4 44065028 44065335 -158263012 + AluSq SINE Alu 1 310 -3 220 163 0 20 chr4 44065442 44065491 -158262856 - MIR SINE MIR -150 112 65 2091 124 0 47 chr4 44065843 44066165 -158262182 - AluSq SINE Alu -6 307 1 2034 115 48 0 chr4 44066303 44066598 -158261749 - AluSx SINE Alu -3 309 1 2130 147 0 0 chr4 44066771 44067077 -158261270 - AluJb SINE Alu -6 306 1 423 274 164 14 chr4 44067131 44067339 -158261008 - MIR SINE MIR -4 258 20 252 250 42 10 chr4 44067366 44067462 -158260885 - L1MC4a LINE L1 -1737 6071 5973 2352 99 0 7 chr4 44067661 44067965 -158260382 - AluSx SINE Alu -10 302 1 389 224 44 78 chr4 44068596 44068801 -158259546 - LTR41 LTR ERVL -13 760 563 2182 133 0 0 chr4 44068944 44069238 -158259109 + AluSx SINE Alu 1 294 -18 393 194 81 100 chr4 44069367 44069527 -158258820 - LTR41 LTR ERVL -616 157 1 393 365 24 10 chr4 44069798 44070006 -158258341 - MIR SINE MIR -12 250 40 327 257 153 42 chr4 44070066 44070327 -158258020 - L1M4 LINE L1 -3644 2502 2213 1629 104 9 0 chr4 44070427 44070647 -158257700 - AluSg/x SINE Alu -6 304 83 381 326 0 30 chr4 44071377 44071509 -158256838 - MIR SINE MIR -65 143 16 1153 251 104 28 chr4 44071578 44072009 -158256338 + L2 LINE L2 2850 3313 0 668 97 0 0 chr4 44072116 44072209 -158256138 - AluSg/x SINE Alu -13 297 205 1995 146 0 3 chr4 44072211 44072498 -158255849 - AluSx SINE Alu -24 288 3 1625 162 27 3 chr4 44072498 44072795 -158255552 - L1MC1 LINE L1 -8 6325 6022 1836 167 10 16 chr4 44072820 44073132 -158255215 + AluJb SINE Alu 1 310 -2 2299 106 0 3 chr4 44073248 44073549 -158254798 + AluSx SINE Alu 1 300 -12 2285 91 3 0 chr4 44073568 44073874 -158254473 + AluSp SINE Alu 1 307 0 482 225 25 67 chr4 44074000 44074179 -158254168 - L1ME LINE L1 -448 5673 5501 336 111 0 0 chr4 44074179 44074233 -158254114 + (TCCCC)n Simple_repeat Simple_repeat 4 57 0 431 153 0 12 chr4 44074662 44074747 -158253600 + CT-rich Low_complexity Low_complexity 1 84 0 1068 175 0 0 chr4 44074747 44074924 -158253423 - AluJb SINE Alu -5 307 131 867 189 23 23 chr4 44074990 44075185 -158253162 - AluJo SINE Alu 0 302 108 2009 101 67 24 chr4 44075288 44075616 -158252731 - L1MA3 LINE L1 -23 6282 5941 2384 90 3 0 chr4 44075616 44075915 -158252432 - AluY SINE Alu -11 300 1 23463 135 11 20 chr4 44075919 44076536 -158251811 - L1 LINE L1 -3542 4023 3402 2343 110 3 0 chr4 44076536 44076845 -158251502 - AluSq SINE Alu -3 310 1 23463 135 11 20 chr4 44076845 44077442 -158250905 - L1 LINE L1 -4163 3402 2801 2214 133 3 0 chr4 44077442 44077751 -158250596 - AluSx SINE Alu -2 310 1 23463 135 11 20 chr4 44077751 44079323 -158249024 - L1 LINE L1 -4764 2801 1275 2395 103 0 0 chr4 44079323 44079634 -158248713 - AluSx SINE Alu -1 311 1 23463 135 11 20 chr4 44079634 44080875 -158247472 - L1 LINE L1 -6290 1275 24 363 279 123 41 chr4 44080978 44081197 -158247150 - MIR SINE MIR -8 254 18 2192 111 3 10 chr4 44082279 44082576 -158245771 - AluSq SINE Alu -18 295 1 645 81 18 18 chr4 44083104 44083215 -158245132 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 790 154 29 15 chr4 44085870 44086006 -158242341 + MER2 DNA MER2_type 1 138 -207 674 129 0 10 chr4 44086010 44086111 -158242236 - FLAM_C SINE Alu -15 128 29 598 218 165 11 chr4 44086111 44086299 -158242048 + MER2 DNA MER2_type 124 340 -5 216 368 37 15 chr4 44086691 44086827 -158241520 - L2 LINE L2 -182 3090 2952 233 153 14 42 chr4 44087295 44087367 -158240980 + (TAA)n Simple_repeat Simple_repeat 3 72 0 1773 168 0 11 chr4 44087373 44087705 -158240642 + AluJo SINE Alu 1 329 0 294 286 150 0 chr4 44087715 44087848 -158240499 - MIR SINE MIR -37 225 73 226 175 0 0 chr4 44088336 44088376 -158239971 + MIR SINE MIR 106 145 -63 2917 152 52 4 chr4 44088395 44088877 -158239470 + Tigger7 DNA MER2_type 22 526 -1961 557 94 19 94 chr4 44088853 44088959 -158239388 + Tigger7 DNA MER2_type 2391 2488 -3 * 983 79 0 0 chr4 44089062 44089188 -158239159 + AluSg/x SINE Alu 185 310 0 2186 81 3 7 chr4 44089387 44089731 -158238616 + AluY SINE Alu 1 343 0 269 380 8 8 chr4 44090149 44090278 -158238069 + MER5B DNA MER1_type 5 133 -45 1706 153 60 0 chr4 44090291 44090573 -158237774 + AluJo SINE Alu 14 312 0 2604 55 0 0 chr4 44090850 44091158 -158237189 + AluY SINE Alu 1 308 -3 1682 141 43 16 chr4 44091417 44091673 -158236674 - AluSq SINE Alu -50 263 1 614 167 0 42 chr4 44091798 44091918 -158236429 + FLAM_C SINE Alu 29 143 0 234 160 0 0 chr4 44093182 44093232 -158235115 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 1099 137 0 28 chr4 44093357 44093539 -158234808 + FRAM SINE Alu 1 176 0 1924 112 3 70 chr4 44093670 44094001 -158234346 - AluSp SINE Alu -4 309 1 192 77 0 0 chr4 44094160 44094186 -158234161 + (T)n Simple_repeat Simple_repeat 1 26 0 369 286 105 0 chr4 44094368 44094473 -158233874 + MIR SINE MIR 33 148 -114 857 121 0 0 chr4 44094475 44094591 -158233756 + AluSg/x SINE Alu 138 253 -59 1872 124 0 4 chr4 44094591 44094856 -158233491 + AluSx SINE Alu 41 304 -8 2291 95 0 23 chr4 44095593 44095898 -158232449 + AluSq SINE Alu 1 298 -15 1814 208 30 1 chr4 44096704 44097133 -158231214 + L1M3 LINE L1 4946 5384 -747 1573 166 15 25 chr4 44097179 44097528 -158230819 + L1M3 LINE L1 5353 5698 -476 506 123 12 0 chr4 44097760 44097841 -158230506 + AluSp/q SINE Alu 221 302 -11 213 358 53 7 chr4 44097847 44097998 -158230349 + L2 LINE L2 2720 2877 -437 373 197 13 0 chr4 44098128 44098204 -158230143 - MER116 DNA Mariner -1 79 3 2082 115 49 3 chr4 44098422 44098710 -158229637 + AluSq SINE Alu 2 302 -11 595 340 14 5 chr4 44099257 44099472 -158228875 - MIR SINE MIR 0 262 46 398 243 29 10 chr4 44102278 44102381 -158225966 + MIR SINE MIR 148 252 -10 1193 101 0 2 chr4 44103082 44103331 -158225016 + AluSx SINE Alu 2 302 -10 2550 71 3 0 chr4 44104135 44104443 -158223904 - AluSp SINE Alu -4 309 1 732 183 24 0 chr4 44104788 44104914 -158223433 - FLAM_C SINE Alu -4 129 1 1650 182 33 4 chr4 44105449 44105765 -158222582 + AluJb SINE Alu 1 324 0 705 171 16 0 chr4 44105805 44105928 -158222419 - FLAM_A SINE Alu -7 126 2 649 230 57 72 chr4 44106021 44106105 -158222242 - MIR SINE MIR -36 226 142 2271 119 3 0 chr4 44106105 44106407 -158221940 - AluSq SINE Alu -10 303 1 649 230 57 72 chr4 44106407 44106531 -158221816 - MIR SINE MIR -120 142 21 1263 130 0 0 chr4 44107399 44107576 -158220771 - AluSx SINE Alu -8 302 126 369 58 0 0 chr4 44107576 44107628 -158220719 + (TTA)n Simple_repeat Simple_repeat 2 53 0 2238 116 7 0 chr4 44107686 44107979 -158220368 - AluSx SINE Alu -17 295 1 968 112 0 8 chr4 44107979 44108113 -158220234 - AluSx SINE Alu -179 133 1 2031 143 3 7 chr4 44108372 44108680 -158219667 - AluSx SINE Alu -5 307 1 187 294 87 0 chr4 44109403 44109495 -158218852 - L2 LINE L2 0 3313 3214 214 220 17 17 chr4 44109610 44109669 -158218678 - L2 LINE L2 -566 2748 2690 1124 133 0 0 chr4 44109676 44109834 -158218513 + AluSg/x SINE Alu 134 291 -19 258 32 0 0 chr4 44109834 44109865 -158218482 + (CAATA)n Simple_repeat Simple_repeat 2 32 0 383 277 126 10 chr4 44109956 44110162 -158218185 + L1ME4a LINE L1 5558 5787 -334 232 177 0 97 chr4 44110301 44110363 -158217984 + L1ME4a LINE L1 5982 6037 -84 195 114 0 0 chr4 44111121 44111156 -158217191 + (T)n Simple_repeat Simple_repeat 1 35 0 1658 183 3 36 chr4 44111903 44112209 -158216138 + AluJb SINE Alu 1 296 -16 803 133 9 0 chr4 44112628 44112741 -158215606 + AluSq/x SINE Alu 1 114 -198 1982 137 20 7 chr4 44113403 44113703 -158214644 - AluSx SINE Alu -8 304 1 1976 108 26 52 chr4 44114151 44114456 -158213891 + AluSx SINE Alu 1 297 -15 710 265 55 47 chr4 44114905 44115158 -158213189 - MIR SINE MIR -3 259 5 3921 234 56 24 chr4 44115353 44116670 -158211677 + L1M4 LINE L1 3052 4410 -1736 1027 80 173 0 chr4 44116718 44116880 -158211467 + AluSc SINE Alu 113 302 -7 2245 222 23 57 chr4 44116883 44117810 -158210537 + L1M4 LINE L1 4497 5356 -790 2043 132 23 3 chr4 44118198 44118501 -158209846 + AluJb SINE Alu 1 309 -3 189 0 0 0 chr4 44118887 44118908 -158209439 + (TG)n Simple_repeat Simple_repeat 2 22 0 191 360 72 14 chr4 44119293 44119432 -158208915 - L2 LINE L2 -50 3222 3076 2129 97 42 0 chr4 44119613 44119901 -158208446 + AluSx SINE Alu 1 300 -12 1168 127 0 0 chr4 44119901 44120059 -158208288 + AluSg/x SINE Alu 134 291 -21 23 0 0 0 chr4 44120061 44120084 -158208263 + AT_rich Low_complexity Low_complexity 1 23 0 861 137 0 8 chr4 44121086 44121217 -158207130 - FLAM_A SINE Alu -3 130 1 266 206 39 0 chr4 44121218 44121275 -158207072 + MLT1K LTR MaLR 529 613 -2 2024 145 17 0 chr4 44121436 44121732 -158206615 + AluSq SINE Alu 1 301 -12 315 0 0 0 chr4 44122441 44122476 -158205871 + (CA)n Simple_repeat Simple_repeat 2 36 0 203 167 42 198 chr4 44122491 44122587 -158205760 + MER5B DNA MER1_type 92 172 -6 346 266 42 100 chr4 44122753 44122871 -158205476 - MIR SINE MIR -24 238 140 2417 99 0 3 chr4 44122871 44123183 -158205164 + AluSq SINE Alu 3 313 0 346 266 42 100 chr4 44123183 44123305 -158205042 - MIR SINE MIR -122 140 12 1561 139 98 8 chr4 44123450 44123716 -158204631 + AluJo SINE Alu 1 290 -22 42 0 0 0 chr4 44123716 44123758 -158204589 + AT_rich Low_complexity Low_complexity 1 42 0 1672 172 0 56 chr4 44123805 44124108 -158204239 + AluJo SINE Alu 1 286 -26 261 0 0 0 chr4 44124168 44124197 -158204150 + (TA)n Simple_repeat Simple_repeat 2 30 0 1821 112 93 0 chr4 44124532 44124810 -158203537 + AluSx SINE Alu 1 304 -8 1618 108 5 0 chr4 44124965 44125187 -158203160 + AluSp SINE Alu 86 308 -5 269 236 46 52 chr4 44125200 44125340 -158203007 + L1MC4 LINE L1 7790 8041 -1 216 0 0 0 chr4 44125610 44125634 -158202713 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 277 159 0 0 chr4 44125635 44125679 -158202668 - L2 LINE L2 -14 3258 3215 355 302 22 14 chr4 44126136 44126275 -158202072 + MIR SINE MIR 7 146 -116 674 246 92 10 chr4 44126278 44126485 -158201862 - MIR SINE MIR -2 260 37 298 264 46 0 chr4 44126489 44126576 -158201771 + MIR SINE MIR 164 254 -8 2094 157 0 3 chr4 44126596 44126909 -158201438 + AluJo SINE Alu 1 312 0 2073 90 0 36 chr4 44127749 44127869 -158200478 + AluSg1 SINE Alu 13 136 -166 2545 71 0 3 chr4 44127869 44128180 -158200167 + AluY SINE Alu 1 310 -1 2073 90 0 36 chr4 44128180 44128359 -158199988 + AluSg1 SINE Alu 136 302 0 300 83 0 0 chr4 44128407 44128455 -158199892 + (TG)n Simple_repeat Simple_repeat 2 49 0 429 269 85 0 chr4 44128722 44128852 -158199495 + MIR SINE MIR 19 159 -103 2044 129 0 10 chr4 44129827 44130122 -158198225 - AluSx SINE Alu -20 292 1 2172 113 3 26 chr4 44130452 44130762 -158197585 + AluSx SINE Alu 1 303 -9 649 230 57 72 chr4 44131631 44131755 -158196592 + MIR SINE MIR 21 142 -120 2263 120 3 0 chr4 44131755 44132056 -158196291 + AluSq SINE Alu 1 302 -11 649 230 57 72 chr4 44132056 44132140 -158196207 + MIR SINE MIR 142 226 -36 733 156 16 0 chr4 44132233 44132355 -158195992 + FLAM_A SINE Alu 2 125 -8 642 171 81 0 chr4 44132395 44132547 -158195800 - AluJb SINE Alu 0 325 165 2186 112 3 0 chr4 44132924 44133219 -158195128 + AluSx SINE Alu 1 296 -16 2394 81 0 43 chr4 44133534 44133856 -158194491 + AluY SINE Alu 1 308 -3 924 128 0 0 chr4 44134615 44134748 -158193599 + FLAM_C SINE Alu 1 133 0 584 68 39 0 chr4 44134749 44134852 -158193495 + (TA)n Simple_repeat Simple_repeat 2 108 0 372 331 70 6 chr4 44134871 44135028 -158193319 - MIR3 SINE MIR -17 191 25 296 269 81 48 chr4 44137326 44137535 -158190812 - MIR SINE MIR -42 220 10 543 127 0 0 chr4 44137574 44137653 -158190694 + Charlie5 DNA MER1_type 21 99 -2513 256 263 12 25 chr4 44138003 44138083 -158190264 - L1ME LINE L1 -249 5872 5794 666 261 94 37 chr4 44138298 44138543 -158189804 + MIR SINE MIR 2 260 -2 904 130 20 14 chr4 44138806 44138952 -158189395 + BC200 scRNA scRNA 1 147 -53 315 247 120 53 chr4 44139458 44139608 -158188739 + L1ME3 LINE L1 5562 5721 -400 1894 115 38 60 chr4 44139769 44140116 -158188231 - MER44D DNA MER2_type 0 609 1 2412 50 40 13 chr4 44140136 44140435 -158187912 + AluY SINE Alu 1 307 -4 337 205 164 0 chr4 44140468 44140590 -158187757 + L1ME4a LINE L1 5979 6120 -1 1906 114 3 63 chr4 44140897 44141212 -158187135 + AluSx SINE Alu 1 296 -16 243 135 0 0 chr4 44141216 44141253 -158187094 - Alu SINE Alu -65 237 201 2064 149 7 3 chr4 44141504 44141813 -158186534 + AluSx SINE Alu 1 310 -2 248 318 70 0 chr4 44142655 44142784 -158185563 - MER117 DNA MER1_type -48 149 12 2161 119 0 3 chr4 44142815 44143109 -158185238 - AluSx SINE Alu -18 294 2 2126 131 6 13 chr4 44143523 44143836 -158184511 + AluSx SINE Alu 1 311 -1 316 329 82 19 chr4 44144470 44144628 -158183719 + MIR SINE MIR 43 210 -52 2402 80 0 0 chr4 44145339 44145627 -158182720 + AluSg1 SINE Alu 1 288 -21 1312 89 0 0 chr4 44145746 44145914 -158182433 + AluSp SINE Alu 131 298 -15 1441 232 40 19 chr4 44146315 44146690 -158181657 + L1ME3 LINE L1 5776 6158 -4 2309 85 3 0 chr4 44146711 44147023 -158181324 + AluSx SINE Alu 1 313 0 761 153 0 0 chr4 44147299 44147410 -158180937 + FLAM_C SINE Alu 13 123 -20 2350 66 10 20 chr4 44147432 44147736 -158180611 + AluY SINE Alu 1 301 -10 2252 121 3 3 chr4 44147738 44148051 -158180296 + AluSq SINE Alu 1 313 0 209 370 0 10 chr4 44148254 44148354 -158179993 - L2 LINE L2 -50 3263 3165 914 116 23 8 chr4 44148625 44148754 -158179593 + AluSq/x SINE Alu 1 131 -182 1957 124 72 0 chr4 44149509 44149800 -158178547 + AluSx SINE Alu 1 312 0 2249 92 27 3 chr4 44149976 44150269 -158178078 + AluSx SINE Alu 2 301 -11 2342 110 3 0 chr4 44150269 44150608 -158177739 + AluSx SINE Alu 1 340 0 2405 92 0 0 chr4 44151550 44151854 -158176493 - AluSq SINE Alu -9 304 1 195 42 0 0 chr4 44153446 44153470 -158174877 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 314 164 60 0 chr4 44153501 44153568 -158174779 + MIR SINE MIR 71 141 -121 211 281 0 18 chr4 44153987 44154044 -158174303 + CT-rich Low_complexity Low_complexity 3 58 0 2551 77 3 0 chr4 44154087 44154398 -158173949 - AluSx SINE Alu 0 312 1 276 130 0 0 chr4 44154934 44154980 -158173367 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 2070 132 10 7 chr4 44154980 44155275 -158173072 - AluSx SINE Alu -16 296 1 1839 165 45 15 chr4 44155436 44155501 -158172846 - MER2 DNA MER2_type 0 345 283 374 50 33 0 chr4 44155501 44155561 -158172786 + L1MA3 LINE L1 6244 6305 0 1839 165 45 15 chr4 44155561 44155829 -158172518 - MER2 DNA MER2_type -62 283 2 21 0 0 0 chr4 44155875 44155896 -158172451 + AT_rich Low_complexity Low_complexity 1 21 0 2237 103 3 25 chr4 44155988 44156307 -158172040 - AluSx SINE Alu 0 312 1 248 212 195 42 chr4 44156377 44156495 -158171852 - MIR3 SINE MIR -71 137 2 1189 94 198 0 chr4 44156535 44156727 -158171620 + MER30 DNA MER1_type 1 230 0 1569 161 7 61 chr4 44156746 44157056 -158171291 + AluJb SINE Alu 3 295 -17 2444 84 3 0 chr4 44157128 44157426 -158170921 - AluSp SINE Alu -13 300 2 2441 84 0 7 chr4 44157490 44157798 -158170549 - AluSc SINE Alu -3 306 1 1691 193 165 85 chr4 44158716 44159018 -158169329 + Charlie1a DNA MER1_type 1 277 -2484 2237 105 13 16 chr4 44159018 44159332 -158169015 - AluSq SINE Alu 0 313 1 1691 193 165 85 chr4 44159332 44159642 -158168705 + Charlie1a DNA MER1_type 277 662 -793 295 147 213 0 chr4 44159618 44159693 -158168654 + MER66A LTR ERV1 246 336 -142 * 21 36 0 0 chr4 44159693 44159721 -158168626 + AT_rich Low_complexity Low_complexity 1 28 0 1769 186 9 3 chr4 44159728 44160054 -158168293 + Charlie1a DNA MER1_type 645 972 -483 245 121 0 0 chr4 44160054 44160087 -158168260 + AluSx SINE Alu 1 33 -100 2290 114 0 0 chr4 44160279 44160586 -158167761 - AluY SINE Alu -4 307 1 2277 107 0 3 chr4 44160761 44161059 -158167288 + AluSx SINE Alu 9 305 -7 233 254 34 0 chr4 44161072 44161131 -158167216 + CT-rich Low_complexity Low_complexity 3 63 0 548 201 58 58 chr4 44161959 44161985 -158166362 - L1ME2 LINE L1 -9 6155 6130 2238 110 0 0 chr4 44161985 44162276 -158166071 + AluSx SINE Alu 1 291 -21 548 201 58 58 chr4 44162276 44162423 -158165924 - L1ME2 LINE L1 -33 6131 5982 2302 66 33 0 chr4 44162740 44163014 -158165333 + AluSg SINE Alu 7 289 -21 1357 94 0 11 chr4 44163014 44163195 -158165152 + AluSg/x SINE Alu 134 312 0 236 219 158 12 chr4 44163225 44163307 -158165040 - MIR SINE MIR -66 196 103 2106 105 30 30 chr4 44163312 44163607 -158164740 + AluSx SINE Alu 1 295 -17 2131 126 3 0 chr4 44163738 44164032 -158164315 + AluSq SINE Alu 1 295 -18 269 319 147 0 chr4 44164183 44164299 -158164048 + L2 LINE L2 2623 2755 -559 319 273 91 9 chr4 44164735 44164845 -158163502 + L2 LINE L2 3154 3272 0 236 158 0 0 chr4 44164969 44165007 -158163340 + Charlie8 DNA MER1_type 221 258 -2159 2046 190 3 11 chr4 44165113 44165486 -158162861 - MLT1B LTR MaLR 0 390 21 2092 99 4 0 chr4 44166275 44166547 -158161800 + AluSq SINE Alu 23 295 -18 438 269 119 26 chr4 44166726 44166919 -158161428 - MIR SINE MIR 0 262 52 1863 139 0 4 chr4 44166997 44167319 -158161028 - AluSq SINE Alu 0 340 20 383 188 0 0 chr4 44167319 44167383 -158160964 - AluJo SINE Alu -160 142 79 191 310 102 32 chr4 44167613 44167800 -158160547 - L2 LINE L2 -463 2851 2652 2085 109 17 3 chr4 44167801 44168095 -158160252 + AluSg SINE Alu 1 298 -12 266 270 0 0 chr4 44168116 44168179 -158160168 + MIR SINE MIR 88 150 -112 241 250 36 60 chr4 44168175 44168259 -158160088 + L2 LINE L2 3188 3269 -3 * 2047 149 0 3 chr4 44168688 44168996 -158159351 + AluJb SINE Alu 1 307 -5 379 336 0 14 chr4 44169323 44169469 -158158878 + MIR SINE MIR 23 166 -96 764 209 109 5 chr4 44169486 44169696 -158158651 + L1ME3A LINE L1 5939 6170 0 2712 106 11 0 chr4 44170598 44170958 -158157389 - THE1B LTR MaLR 0 364 1 2318 106 0 3 chr4 44171913 44172214 -158156133 - AluSx SINE Alu -12 300 1 566 264 38 13 chr4 44172214 44172373 -158155974 - MIR SINE MIR -68 194 32 1105 75 0 0 chr4 44172804 44172938 -158155409 + AluY SINE Alu 1 134 -177 264 91 0 0 chr4 44173038 44173082 -158155265 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 2064 120 18 0 chr4 44173089 44173365 -158154982 - AluSx SINE Alu -31 281 1 2185 110 6 35 chr4 44173373 44173690 -158154657 - AluSx SINE Alu -4 308 1 416 174 12 35 chr4 44173690 44173767 -158154580 + Tigger5 DNA MER2_type 2247 2323 0 443 236 43 36 chr4 44173767 44173907 -158154440 - MER3 DNA MER1_type -68 141 1 1212 68 0 0 chr4 44173912 44174117 -158154230 - AluYa8 SINE Alu 0 337 133 1822 111 66 15 chr4 44174118 44174389 -158153958 - AluSx SINE Alu -5 307 23 2080 101 20 10 chr4 44174486 44174784 -158153563 - AluSc SINE Alu -8 301 1 182 176 0 0 chr4 44174896 44174930 -158153417 + L3 LINE CR1 711 744 -833 2087 159 118 20 chr4 44174959 44175349 -158152998 + MSTA LTR MaLR 1 428 0 3509 162 32 2 chr4 44175349 44175948 -158152399 + MSTA-int LTR MaLR 1 617 -1034 547 118 0 0 chr4 44176049 44176125 -158152222 + AluS SINE Alu 220 295 -17 699 239 35 80 chr4 44176254 44176455 -158151892 - MER58A DNA MER1_type -26 198 7 2033 159 0 6 chr4 44176564 44176878 -158151469 - AluJb SINE Alu 0 312 1 233 37 0 0 chr4 44177041 44177068 -158151279 + (T)n Simple_repeat Simple_repeat 1 27 0 664 293 36 28 chr4 44177178 44177427 -158150920 - L1MEc LINE L1 -6115 281 31 269 231 31 0 chr4 44178951 44179016 -158149331 - MER103 DNA DNA -25 141 75 183 42 0 0 chr4 44179269 44179293 -158149054 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1602 55 5 32 chr4 44179296 44179516 -158148831 - AluY SINE Alu -20 291 78 1559 104 0 28 chr4 44179838 44180050 -158148297 - AluY SINE Alu -105 206 1 307 100 0 0 chr4 44180050 44180090 -158148257 + MSTA LTR MaLR 389 428 0 189 314 167 19 chr4 44180091 44180247 -158148100 + MIR SINE MIR 54 232 -30 402 360 118 22 chr4 44180398 44180862 -158147485 + L3 LINE CR1 794 1302 -275 1005 150 0 0 chr4 44231105 44231252 -158097095 + AluSg/x SINE Alu 154 300 -12 2244 116 0 0 chr4 44231785 44232086 -158096261 - AluSx SINE Alu -7 305 5 236 109 0 43 chr4 44232348 44232394 -158095953 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 1077 89 0 20 chr4 44232398 44232544 -158095803 + AluSq/x SINE Alu 1 143 -170 280 98 0 0 chr4 44232544 44232585 -158095762 + AluSq/x SINE Alu 95 135 -168 407 58 0 0 chr4 44232585 44232637 -158095710 + AluSc SINE Alu 82 133 -176 1586 113 0 5 chr4 44232637 44232849 -158095498 + AluSg/x SINE Alu 82 292 -18 264 300 80 10 chr4 44232944 44233044 -158095303 + MIR3 SINE MIR 70 176 -32 1610 185 3 23 chr4 44233068 44233376 -158094971 - AluJb SINE Alu -10 302 1 809 150 0 34 chr4 44233821 44233968 -158094379 + AluSg/x SINE Alu 171 312 0 1971 126 18 4 chr4 44233976 44234253 -158094094 + AluSq SINE Alu 1 281 -32 243 0 0 0 chr4 44234253 44234280 -158094067 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 268 311 47 58 chr4 44234864 44235054 -158093293 - L2 LINE L2 -10 3262 3075 518 139 78 0 chr4 44235132 44235153 -158093194 - L1MB5 LINE L1 -2 6172 6154 1818 159 14 3 chr4 44235153 44235443 -158092904 - AluSx SINE Alu -19 293 1 518 139 78 0 chr4 44235443 44235536 -158092811 - L1MB5 LINE L1 -20 6154 6049 1326 205 4 0 chr4 44235536 44235775 -158092572 - AluJb SINE Alu -7 305 66 2174 93 0 4 chr4 44235875 44236144 -158092203 - AluSg SINE Alu -41 269 2 2084 103 7 3 chr4 44236202 44236507 -158091840 - AluSx SINE Alu 0 306 1 302 304 43 22 chr4 44237113 44237251 -158091096 + L2 LINE L2 2596 2736 -578 1860 131 29 4 chr4 44237278 44237577 -158090770 + AluJb SINE Alu 1 306 0 715 180 0 0 chr4 44237799 44237921 -158090426 + FLAM_C SINE Alu 5 126 -17 1889 140 4 0 chr4 44238057 44238329 -158090018 - AluSx SINE Alu -39 273 1 184 296 87 35 chr4 44238366 44238538 -158089809 + L2 LINE L2 2771 2951 -363 22 35 0 0 chr4 44238725 44238754 -158089593 + AT_rich Low_complexity Low_complexity 1 29 0 2812 135 8 70 chr4 44238890 44238949 -158089398 + L1MC1 LINE L1 5835 5896 -437 2206 121 3 3 chr4 44238949 44239256 -158089091 + AluSx SINE Alu 1 307 -5 2812 135 8 70 chr4 44239256 44239728 -158088619 + L1MC1 LINE L1 5896 6333 0 460 241 6 6 chr4 44239731 44239901 -158088446 + (TA)n Simple_repeat Simple_repeat 2 171 0 2139 123 3 3 chr4 44239973 44240273 -158088074 + AluSx SINE Alu 3 302 -10 359 125 66 75 chr4 44240356 44240519 -158087828 - MER3 DNA MER1_type -1 208 5 2211 122 0 0 chr4 44240671 44240965 -158087382 - AluSx SINE Alu -18 294 1 831 122 0 14 chr4 44241210 44241349 -158086998 - Alu SINE Alu 0 310 174 635 115 0 10 chr4 44241449 44241545 -158086802 - AluSq/x SINE Alu -180 133 39 32 48 0 48 chr4 44241698 44241752 -158086595 + AT_rich Low_complexity Low_complexity 1 51 -28 2490 43 3 13 chr4 44241752 44242053 -158086294 + AluY SINE Alu 14 311 0 32 48 0 48 chr4 44242053 44242081 -158086266 + AT_rich Low_complexity Low_complexity 51 79 0 1382 176 38 22 chr4 44242201 44242297 -158086050 + AluJo SINE Alu 40 133 -179 2462 88 3 0 chr4 44242297 44242605 -158085742 + AluSp SINE Alu 1 309 -4 1382 176 38 22 chr4 44242605 44242775 -158085572 + AluJo SINE Alu 133 310 -2 1328 131 5 0 chr4 44243300 44243491 -158084856 - AluSg/x SINE Alu -3 307 116 2551 4 0 0 chr4 44243594 44243863 -158084484 - AluYa5 SINE Alu -42 269 1 2358 108 0 0 chr4 44244236 44244543 -158083804 - AluSx SINE Alu -4 308 2 313 167 61 0 chr4 44244846 44244912 -158083435 - MIR SINE MIR -91 171 102 1632 87 59 5 chr4 44245113 44245332 -158083015 - AluSx SINE Alu -21 291 61 1258 204 24 8 chr4 44245420 44245675 -158082672 - MER58 DNA MER1_type -2160 260 2 2338 99 0 3 chr4 44246110 44246412 -158081935 + AluSx SINE Alu 1 301 -11 392 191 17 98 chr4 44246412 44246506 -158081841 - MER113 DNA MER1_type? -345 176 101 1932 138 0 0 chr4 44246506 44246788 -158081559 + AluSx SINE Alu 30 311 -1 392 191 17 98 chr4 44246788 44246866 -158081481 - MER113 DNA MER1_type? -420 101 18 641 227 182 0 chr4 44247133 44247336 -158081011 + MIR SINE MIR 2 241 -21 277 141 0 113 chr4 44247366 44247437 -158080910 + AluSq/x SINE Alu 84 146 -156 719 158 0 0 chr4 44247437 44247551 -158080796 + AluJo/FRAM SINE Alu 176 289 -23 1578 143 18 22 chr4 44247655 44247928 -158080419 + L1MB7 LINE L1 5738 6009 -175 1862 141 0 33 chr4 44248207 44248513 -158079834 + AluJb SINE Alu 1 296 -16 29 28 0 0 chr4 44248710 44248746 -158079601 + AT_rich Low_complexity Low_complexity 1 36 0 2333 108 0 0 chr4 44248821 44249127 -158079220 - AluY SINE Alu -5 306 1 2175 119 0 10 chr4 44249130 44249432 -158078915 - AluSx SINE Alu -13 299 1 367 267 140 7 chr4 44249439 44249589 -158078758 - MIR SINE MIR -11 251 82 1964 178 81 35 chr4 44249794 44250278 -158078069 - LTR54 LTR ERV1 0 510 5 735 191 0 0 chr4 44250278 44250404 -158077943 - FLAM_A SINE Alu -16 126 1 1129 61 0 0 chr4 44250637 44250769 -158077578 - AluY SINE Alu -179 132 1 1738 60 0 19 chr4 44250771 44250986 -158077361 - AluSg SINE Alu -99 211 1 606 276 98 14 chr4 44250986 44251261 -158077086 - L2 LINE L2 -559 2755 2458 3053 87 7 39 chr4 44251268 44251538 -158076809 + L1PB2 LINE L1 5703 5953 -198 2149 120 7 7 chr4 44251538 44251839 -158076508 + AluSg SINE Alu 1 301 -9 3053 87 7 39 chr4 44251839 44252029 -158076318 + L1PB2 LINE L1 5953 6148 -3 2434 100 0 0 chr4 44252545 44252854 -158075493 + AluSg SINE Alu 1 309 -1 468 243 167 65 chr4 44252983 44253246 -158075101 + L2 LINE L2 3023 3312 -1 195 324 14 0 chr4 44253241 44253312 -158075035 + MIR SINE MIR 183 254 -8 * 30 45 0 0 chr4 44253387 44253431 -158074916 + AT_rich Low_complexity Low_complexity 1 44 0 1386 126 0 24 chr4 44253534 44253740 -158074607 - AluSx SINE Alu -111 201 1 1417 176 118 14 chr4 44253809 44253979 -158074368 - Charlie4a DNA MER1_type -1578 383 232 1914 164 0 23 chr4 44253979 44254283 -158074064 - AluJb SINE Alu -14 298 2 1417 176 118 14 chr4 44254283 44254459 -158073888 - Charlie4a DNA MER1_type -1729 232 1 2618 62 0 0 chr4 44254593 44254898 -158073449 - AluY SINE Alu -6 305 1 2213 66 21 3 chr4 44255522 44255809 -158072538 - AluSx SINE Alu -20 292 1 380 130 0 0 chr4 44256291 44256367 -158071980 + AluSp/q SINE Alu 232 307 0 1865 123 13 26 chr4 44256552 44256854 -158071493 - AluSx SINE Alu -14 298 1 317 257 54 0 chr4 44258086 44258160 -158070187 + L2 LINE L2 3230 3307 -6 2142 96 4 0 chr4 44258319 44258635 -158069712 + AluSg SINE Alu 1 317 0 892 158 0 0 chr4 44258915 44259054 -158069293 - FLAM_C SINE Alu -4 139 1 1675 122 46 0 chr4 44259069 44259331 -158069016 - AluSx SINE Alu 0 312 39 329 200 21 74 chr4 44259431 44259526 -158068821 - AluS SINE Alu -213 90 1 187 262 0 0 chr4 44259669 44259711 -158068636 - MIR SINE MIR -16 246 205 184 311 96 53 chr4 44259837 44260046 -158068301 - L2 LINE L2 -226 3046 2829 2229 109 0 0 chr4 44260104 44260416 -158067931 - AluSx SINE Alu 0 312 1 192 321 89 48 chr4 44260444 44260839 -158067508 - L2 LINE L2 -654 2660 2250 250 287 141 75 chr4 44261184 44261211 -158067136 + L2 LINE L2 2732 2756 -557 329 0 24 0 chr4 44261211 44261252 -158067095 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1832 155 3 0 chr4 44261257 44261547 -158066800 - AluJb SINE Alu -21 291 1 250 287 141 75 chr4 44261547 44261917 -158066430 + L2 LINE L2 2759 3152 -161 591 309 81 13 chr4 44262488 44262513 -158065834 - L2 LINE L2 -179 3134 3112 2114 117 3 0 chr4 44262513 44262821 -158065526 + AluSx SINE Alu 1 309 -3 591 309 81 13 chr4 44262821 44263102 -158065245 - L2 LINE L2 -201 3112 2807 221 350 29 10 chr4 44263588 44263691 -158064656 + MIR SINE MIR 44 148 -114 1467 229 56 74 chr4 44263700 44264136 -158064211 - MLT1E3 LTR MaLR -2 622 169 839 153 0 0 chr4 44264136 44264260 -158064087 - FLAM_C SINE Alu -6 127 4 1467 229 56 74 chr4 44264260 44264427 -158063920 - MLT1E3 LTR MaLR -455 169 1 2148 92 7 0 chr4 44264590 44264883 -158063464 + AluSx SINE Alu 2 296 -16 628 106 0 0 chr4 44265290 44265375 -158062972 - AluY SINE Alu -232 86 2 2066 201 16 19 chr4 44266070 44266268 -158062079 + MER63B DNA MER1_type 1 198 -864 2065 129 0 0 chr4 44266268 44266570 -158061777 + AluSx SINE Alu 1 302 -10 2165 101 0 3 chr4 44266572 44266868 -158061479 + AluSx SINE Alu 1 295 -17 2066 201 16 19 chr4 44266868 44267093 -158061254 + MER63B DNA MER1_type 199 426 -10 638 295 40 40 chr4 44267389 44267640 -158060707 - MIR SINE MIR -1 261 11 629 121 379 21 chr4 44267914 44268054 -158060293 + AluJo SINE Alu 112 301 -11 1802 143 24 3 chr4 44268054 44268348 -158059999 + AluSx SINE Alu 1 300 -12 2463 57 0 0 chr4 44268513 44268813 -158059534 - AluY SINE Alu -11 300 1 1116 130 0 6 chr4 44268835 44269004 -158059343 - FRAM SINE Alu -9 167 1 246 239 39 67 chr4 44269012 44269192 -158059155 + L1MC4a LINE L1 5765 5939 -1869 1890 136 0 7 chr4 44269372 44269658 -158058689 + AluJb SINE Alu 14 297 -15 577 111 11 0 chr4 44269696 44269786 -158058561 + MER53 DNA DNA 99 189 0 29 28 0 0 chr4 44269989 44270025 -158058322 + AT_rich Low_complexity Low_complexity 1 36 0 745 289 45 12 chr4 44270762 44271004 -158057343 + LTR33 LTR ERVL 38 287 -234 2061 109 16 13 chr4 44271006 44271317 -158057030 - AluSx SINE Alu 0 312 1 22 80 0 0 chr4 44271558 44271608 -158056739 + AT_rich Low_complexity Low_complexity 1 50 0 30 19 0 39 chr4 44271719 44271750 -158056597 + AT_rich Low_complexity Low_complexity 1 31 -19 717 167 18 0 chr4 44271750 44271864 -158056483 - FLAM_A SINE Alu -17 116 1 30 19 0 39 chr4 44271864 44271884 -158056463 + AT_rich Low_complexity Low_complexity 31 50 0 22 96 0 0 chr4 44271929 44271981 -158056366 + AT_rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chr4 44272390 44272418 -158055929 + AT_rich Low_complexity Low_complexity 1 28 0 2596 29 0 7 chr4 44273119 44273429 -158054918 - AluY SINE Alu -3 308 1 195 42 0 0 chr4 44273693 44273717 -158054630 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2127 113 0 0 chr4 44273717 44274001 -158054346 - AluSx SINE Alu -28 284 1 1219 167 0 22 chr4 44274072 44274294 -158054053 - AluJb SINE Alu -45 267 51 231 205 0 0 chr4 44274303 44274342 -158054005 - MIR SINE MIR -4 258 220 862 206 0 11 chr4 44274345 44274529 -158053818 - FRAM SINE Alu -1 175 1 322 211 161 21 chr4 44274529 44274648 -158053699 - MIR SINE MIR -62 146 58 1277 210 15 4 chr4 44274686 44274948 -158053399 - AluJo SINE Alu -47 265 1 1143 144 0 93 chr4 44275410 44275646 -158052701 + MER20 DNA MER1_type 4 217 -2 764 100 8 25 chr4 44275680 44275800 -158052547 - FLAM_C SINE Alu 0 143 26 1165 141 0 0 chr4 44275927 44276104 -158052243 - AluSg/x SINE Alu -2 308 132 1868 122 7 23 chr4 44276104 44276407 -158051940 - AluSx SINE Alu -14 298 1 960 272 66 25 chr4 44276469 44276939 -158051408 - L1MEc LINE L1 -4863 1250 762 745 175 0 44 chr4 44276939 44277076 -158051271 - FLAM_A SINE Alu -1 132 2 1072 146 5 60 chr4 44277078 44277246 -158051101 - AluJo SINE Alu -17 295 138 2072 129 0 7 chr4 44277246 44277555 -158050792 - AluSc SINE Alu -2 307 1 1072 146 5 60 chr4 44277555 44277585 -158050762 - AluJo SINE Alu -174 138 108 306 0 0 0 chr4 44277585 44277619 -158050728 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2066 104 13 0 chr4 44277623 44277921 -158050426 - AluSx SINE Alu -10 302 1 1657 157 20 7 chr4 44277985 44278278 -158050069 - AluJb SINE Alu -13 299 3 344 235 5 103 chr4 44278281 44278494 -158049853 - L1MEc LINE L1 -5341 776 585 895 179 5 77 chr4 44278722 44278917 -158049430 - MER5A DNA MER1_type -8 181 1 1718 111 13 70 chr4 44278942 44279257 -158049090 - AluJb SINE Alu -15 297 1 437 345 64 77 chr4 44279443 44279713 -158048634 - L1MEc LINE L1 -5931 465 199 2137 92 3 0 chr4 44279713 44280023 -158048324 + AluY SINE Alu 1 311 0 437 345 64 77 chr4 44280023 44280142 -158048205 - L1MEc LINE L1 -6197 199 80 241 270 48 0 chr4 44280255 44280318 -158048029 + L2 LINE L2 3248 3313 0 2172 112 3 0 chr4 44280493 44280798 -158047549 + AluSp SINE Alu 1 306 -7 2086 103 23 7 chr4 44280834 44281136 -158047211 + AluSx SINE Alu 1 307 -5 288 323 10 0 chr4 44281141 44281240 -158047107 + MIR SINE MIR 56 155 -107 240 375 0 0 chr4 44281325 44281413 -158046934 + MIR SINE MIR 35 122 -86 474 191 140 59 chr4 44281602 44281738 -158046609 - L2 LINE L2 -9 3304 3158 2182 92 6 13 chr4 44281741 44282055 -158046292 + AluSx SINE Alu 1 312 0 896 254 11 128 chr4 44282091 44282219 -158046128 + MER21B LTR ERV1 13 154 -709 1467 155 53 50 chr4 44282219 44282522 -158045825 - AluJo SINE Alu -8 304 1 896 254 11 128 chr4 44282522 44282775 -158045572 + MER21B LTR ERV1 154 349 -514 984 228 69 13 chr4 44282829 44283061 -158045286 + MER21B LTR ERV1 355 599 -264 1562 123 0 0 chr4 44283239 44283458 -158044889 + AluSx SINE Alu 1 219 -93 686 237 82 27 chr4 44283510 44283729 -158044618 + MER21B LTR ERV1 612 842 -21 515 288 120 32 chr4 44283752 44284061 -158044286 - L2 LINE L2 -172 3141 2806 568 218 36 0 chr4 44284085 44284195 -158044152 + MER81 DNA DNA 1 114 0 655 68 23 0 chr4 44284264 44284352 -158043995 - AluSp/q SINE Alu -18 295 206 1432 294 3 71 chr4 44284352 44284678 -158043669 - AluY SINE Alu -5 306 3 2035 95 14 0 chr4 44284881 44285164 -158043183 + AluSp SINE Alu 1 287 -26 219 36 0 0 chr4 44285167 44285195 -158043152 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 878 260 32 14 chr4 44285216 44285409 -158042938 + MIR SINE MIR 30 229 -33 2105 78 41 3 chr4 44285409 44285702 -158042645 + AluY SINE Alu 1 304 -7 878 260 32 14 chr4 44285702 44285727 -158042620 + MIR SINE MIR 229 252 -10 2572 90 8 11 chr4 44285730 44286086 -158042261 + THE1A LTR MaLR 1 355 0 1892 85 35 35 chr4 44286513 44286830 -158041517 + AluSp SINE Alu 1 317 0 1580 124 85 35 chr4 44287317 44287599 -158040748 + AluSx SINE Alu 1 296 -16 240 35 0 0 chr4 44288565 44288594 -158039753 + (GA)n Simple_repeat Simple_repeat 2 30 0 1955 122 10 7 chr4 44288612 44288926 -158039421 - AluSx SINE Alu 0 312 1 1574 205 0 19 chr4 44289186 44289503 -158038844 - AluJb SINE Alu -1 311 1 217 265 111 68 chr4 44289626 44289743 -158038604 + L2 LINE L2 3150 3271 -1 181 219 0 0 chr4 44289787 44289819 -158038528 + MIR SINE MIR 113 144 -118 2265 101 0 0 chr4 44291034 44291340 -158037007 - AluSx SINE Alu -6 306 1 776 289 29 0 chr4 44291536 44291782 -158036565 + LTR16C LTR ERVL 232 484 -7 2262 86 0 0 chr4 44291972 44292264 -158036083 - AluSx SINE Alu -20 292 1 318 292 62 0 chr4 44292334 44292430 -158035917 + L2 LINE L2 3212 3313 0 2199 103 0 0 chr4 44293249 44293541 -158034806 + AluSg SINE Alu 3 294 -16 2069 114 27 0 chr4 44293543 44293841 -158034506 + AluSx SINE Alu 1 306 -6 1780 152 9 19 chr4 44295382 44295697 -158032650 - AluJb SINE Alu 0 312 1 180 0 0 0 chr4 44295747 44295767 -158032580 + (TA)n Simple_repeat Simple_repeat 2 21 0 2367 79 3 0 chr4 44295767 44296071 -158032276 - AluSp SINE Alu -8 305 1 642 202 8 0 chr4 44296196 44296325 -158032022 + FLAM_C SINE Alu 11 140 -3 839 223 46 0 chr4 44296427 44296602 -158031745 + AluJb SINE Alu 121 303 -9 344 240 104 79 chr4 44296779 44296958 -158031389 - MIR3 SINE MIR -43 165 16 194 250 25 0 chr4 44297580 44297620 -158030727 - L3 LINE CR1 -25 1552 1512 434 167 250 9 chr4 44297640 44297748 -158030599 - L2 LINE L2 -1 3312 3179 2021 13 0 0 chr4 44297750 44297978 -158030369 - AluYa5 SINE Alu -9 302 75 739 155 9 0 chr4 44298012 44298128 -158030219 - Tigger1 DNA MER2_type 0 2418 2302 * 9875 117 25 15 chr4 44298118 44298185 -158030162 - Tigger1 DNA MER2_type -882 1536 1471 1743 151 10 10 chr4 44298185 44298497 -158029850 - AluJb SINE Alu 0 312 1 9875 117 25 15 chr4 44298497 44299471 -158028876 - Tigger1 DNA MER2_type -947 1471 472 1955 115 11 0 chr4 44299471 44299781 -158028566 - AluSx SINE Alu 0 313 1 9875 117 25 15 chr4 44299781 44300235 -158028112 - Tigger1 DNA MER2_type -1946 472 24 930 257 72 26 chr4 44300241 44300695 -158027652 - L2 LINE L2 -158 3155 2669 1640 153 4 0 chr4 44300929 44301191 -158027156 - AluSx SINE Alu -39 273 11 811 112 0 0 chr4 44301458 44301565 -158026782 + AluSq/x SINE Alu 1 107 -206 463 167 0 0 chr4 44301665 44301731 -158026616 - AluJ/FLAM SINE Alu -244 68 3 2328 160 11 33 chr4 44301781 44302031 -158026316 - L1MB5 LINE L1 -17 6157 5920 2067 110 0 0 chr4 44302031 44302322 -158026025 + AluSx SINE Alu 1 291 -21 2328 160 11 33 chr4 44302322 44302522 -158025825 - L1MB5 LINE L1 -254 5920 5717 838 189 37 30 chr4 44302722 44302886 -158025461 - FRAM SINE Alu -12 164 1 300 289 99 82 chr4 44302901 44303243 -158025104 + Charlie8 DNA MER1_type 75 422 -1995 437 165 16 211 chr4 44303327 44303395 -158024952 - L1MB7 LINE L1 -3 6181 6101 2004 87 0 54 chr4 44303395 44303731 -158024616 + AluSx SINE Alu 1 320 0 437 165 16 211 chr4 44303731 44303866 -158024481 - L1MB7 LINE L1 -83 6101 6028 1947 86 118 0 chr4 44303866 44304145 -158024202 + AluSx SINE Alu 1 312 0 437 165 16 211 chr4 44304145 44304181 -158024166 - L1MB7 LINE L1 -156 6028 5987 328 143 16 0 chr4 44304952 44305015 -158023332 + MER53 DNA DNA 124 187 -2 273 258 124 10 chr4 44305387 44305484 -158022863 - MIR SINE MIR -68 194 87 200 209 93 0 chr4 44305678 44305721 -158022626 + L2 LINE L2 3226 3272 0 372 282 0 27 chr4 44306097 44306207 -158022140 - MIR3 SINE MIR -18 190 84 316 279 35 0 chr4 44307256 44307342 -158021005 - L2 LINE L2 0 3313 3225 228 35 0 0 chr4 44308245 44308274 -158020073 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 614 186 152 0 chr4 44308284 44308429 -158019918 + Charlie5 DNA MER1_type 1 167 -2445 * 1342 144 148 38 chr4 44308423 44308762 -158019585 + Charlie5 DNA MER1_type 2249 2624 0 1573 157 30 0 chr4 44308874 44309142 -158019205 + AluJb SINE Alu 1 276 -36 1061 126 164 65 chr4 44309250 44309422 -158018925 - AluJo SINE Alu -37 275 73 2126 88 23 10 chr4 44309422 44309729 -158018618 + AluSp SINE Alu 2 312 -1 1061 126 164 65 chr4 44309729 44309787 -158018560 - AluJo SINE Alu -239 73 22 405 0 0 0 chr4 44309788 44309833 -158018514 + (TG)n Simple_repeat Simple_repeat 2 46 0 299 326 103 17 chr4 44309965 44310198 -158018149 - L2 LINE L2 -1063 2251 1999 617 234 19 32 chr4 44310257 44310411 -158017936 - MIR SINE MIR -77 185 34 2119 117 10 0 chr4 44310506 44310815 -158017532 + AluSx SINE Alu 1 312 0 499 243 57 14 chr4 44311224 44311364 -158016983 + L3b LINE CR1 1248 1393 -190 983 256 49 4 chr4 44311474 44311720 -158016627 - MIR SINE MIR 0 262 6 331 254 107 89 chr4 44311818 44312156 -158016191 + MLT1H LTR MaLR 17 360 -182 1615 142 3 66 chr4 44312236 44312568 -158015779 - AluSx SINE Alu -1 311 1 959 85 0 0 chr4 44312574 44312703 -158015644 - L1MB3 LINE L1 0 6183 6055 1971 102 0 66 chr4 44312703 44313035 -158015312 - AluSq SINE Alu -3 310 1 1560 133 0 0 chr4 44313041 44313282 -158015065 - L1MB3 LINE L1 0 6183 5943 539 250 32 0 chr4 44313548 44313672 -158014675 - MIR SINE MIR -54 208 81 343 194 134 148 chr4 44314018 44314235 -158014112 - MER112 DNA MER1_type -46 214 1 596 68 0 0 chr4 44314239 44314313 -158014034 + Alu SINE Alu 223 296 -13 727 209 16 0 chr4 44314706 44314835 -158013512 + FLAM_C SINE Alu 1 131 -2 2342 71 0 3 chr4 44314842 44315138 -158013209 - AluSp SINE Alu -18 295 1 773 129 73 0 chr4 44315578 44315702 -158012645 - FLAM_C SINE Alu 0 133 1 1123 131 11 0 chr4 44315962 44316137 -158012210 - AluSg/x SINE Alu -2 310 134 188 0 0 69 chr4 44316139 44316168 -158012179 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 760 126 0 9 chr4 44316168 44316279 -158012068 - AluSp/q SINE Alu -29 284 175 183 281 175 18 chr4 44316386 44316500 -158011847 + L2 LINE L2 2924 3055 -217 239 233 50 0 chr4 44316694 44316754 -158011593 + MLT1L LTR MaLR 3 65 -550 2020 124 13 0 chr4 44316951 44317258 -158011089 + AluSx SINE Alu 1 311 -1 1878 116 0 75 chr4 44317343 44317663 -158010684 + AluSx SINE Alu 1 296 -16 828 233 73 12 chr4 44318197 44318442 -158009905 - MER58B DNA MER1_type -1 340 81 27 73 0 0 chr4 44318660 44318715 -158009632 + AT_rich Low_complexity Low_complexity 1 55 0 2182 89 0 7 chr4 44318716 44319008 -158009339 + AluSc SINE Alu 1 290 -19 21 26 0 26 chr4 44319033 44319051 -158009296 + AT_rich Low_complexity Low_complexity 1 18 -20 1950 97 50 0 chr4 44319051 44319330 -158009017 + AluSx SINE Alu 1 293 -19 21 26 0 26 chr4 44319330 44319350 -158008997 + AT_rich Low_complexity Low_complexity 18 38 0 1714 154 0 11 chr4 44319978 44320287 -158008060 - AluJb SINE Alu 0 306 1 1996 131 3 13 chr4 44320708 44321020 -158007327 + AluSx SINE Alu 1 309 -3 1034 239 143 67 chr4 44321146 44321657 -158006690 + MLT1H1 LTR MaLR 1 550 -5 1507 163 23 46 chr4 44321747 44322054 -158006293 - AluJo SINE Alu -12 300 1 2463 37 0 0 chr4 44322094 44322389 -158005958 + AluY SINE Alu 1 295 -16 275 356 27 27 chr4 44322393 44322440 -158005907 + L3 LINE CR1 1315 1361 -216 2284 73 6 19 chr4 44322440 44322757 -158005590 + AluSp SINE Alu 1 313 0 275 356 27 27 chr4 44322757 44322855 -158005492 + L3 LINE CR1 1360 1460 -117 433 303 103 36 chr4 44322917 44323112 -158005235 + MIR SINE MIR 47 254 -8 192 333 64 0 chr4 44323092 44323170 -158005177 + L3 LINE CR1 1471 1553 -24 * 305 291 95 90 chr4 44323549 44323638 -158004709 + MIR SINE MIR 14 101 -161 1959 125 3 26 chr4 44323638 44323950 -158004397 + AluSx SINE Alu 1 305 -7 305 291 95 90 chr4 44323950 44324049 -158004298 + MIR SINE MIR 101 203 -59 2398 67 0 0 chr4 44324119 44324418 -158003929 + AluSc SINE Alu 1 299 -10 1485 258 79 22 chr4 44324599 44324658 -158003689 - L1ME3A LINE L1 -5 6165 6111 739 180 8 23 chr4 44324658 44324786 -158003561 + FLAM_C SINE Alu 1 126 -7 1485 258 79 22 chr4 44324786 44325269 -158003078 - L1ME3A LINE L1 -59 6111 5592 354 133 0 40 chr4 44325291 44325366 -158002981 + (TCTCC)n Simple_repeat Simple_repeat 2 73 0 940 82 0 0 chr4 44325668 44325813 -158002534 + AluSg/x SINE Alu 160 304 0 393 270 103 24 chr4 44326064 44326190 -158002157 - MIR3 SINE MIR -3 205 70 787 137 23 23 chr4 44326531 44326662 -158001685 + FLAM_C SINE Alu 3 133 -10 847 232 49 99 chr4 44326721 44327126 -158001221 + MLT1J1 LTR MaLR 62 446 0 305 313 36 27 chr4 44328159 44328271 -158000076 + MIR SINE MIR 15 127 -135 1782 158 16 0 chr4 44328390 44328693 -157999654 + AluJo SINE Alu 1 308 -4 733 234 70 28 chr4 44328947 44328965 -157999382 + MIR SINE MIR 17 33 -229 2202 102 0 0 chr4 44328965 44329260 -157999087 + AluSg SINE Alu 2 296 -14 733 234 70 28 chr4 44329260 44329455 -157998892 + MIR SINE MIR 33 239 -23 399 158 0 45 chr4 44329468 44329560 -157998787 - AluJ/FLAM SINE Alu -240 62 1 230 321 0 25 chr4 44329667 44329748 -157998599 - MIR SINE MIR -135 127 49 509 313 34 0 chr4 44329907 44330083 -157998264 - MIR SINE MIR -1 261 80 696 140 0 0 chr4 44330620 44330727 -157997620 + AluSg/x SINE Alu 191 297 -15 1862 140 0 22 chr4 44330738 44331052 -157997295 + AluJb SINE Alu 1 307 -5 244 247 41 14 chr4 44331062 44331135 -157997212 + L1M4 LINE L1 4514 4588 -1558 1946 81 0 0 chr4 44331333 44331581 -157996766 + AluSq SINE Alu 39 286 -27 576 77 0 0 chr4 44331581 44331659 -157996688 + (TAGA)n Simple_repeat Simple_repeat 2 79 0 2474 50 0 0 chr4 44332008 44332306 -157996041 - AluY SINE Alu -13 298 1 2171 92 0 3 chr4 44332315 44332608 -157995739 - AluSx SINE Alu -20 292 1 3372 108 8 35 chr4 44332691 44333182 -157995165 - MER1A DNA MER1_type 0 529 52 336 281 117 56 chr4 44333198 44333447 -157994900 + L1MC4a LINE L1 1712 1975 -4421 2049 113 0 0 chr4 44333529 44333841 -157994506 + AluSx SINE Alu 1 312 0 399 342 53 9 chr4 44333864 44334206 -157994141 + L1MC4a LINE L1 4870 5226 -989 1028 93 6 49 chr4 44334227 44334333 -157994014 + L1PB1 LINE L1 5997 6095 -56 2178 101 3 16 chr4 44334333 44334640 -157993707 + AluSx SINE Alu 1 303 -9 1028 93 6 49 chr4 44334640 44334695 -157993652 + L1PB1 LINE L1 6095 6151 0 1740 94 68 4 chr4 44334711 44334976 -157993371 + AluSx SINE Alu 12 293 -19 488 253 82 10 chr4 44334979 44335173 -157993174 + L1MC4a LINE L1 5888 6095 -1782 651 144 135 0 chr4 44335215 44335319 -157993028 + FLAM_C SINE Alu 1 118 -15 44 0 0 0 chr4 44335319 44335363 -157992984 + AT_rich Low_complexity Low_complexity 1 44 0 2011 128 7 10 chr4 44335468 44335772 -157992575 + AluSx SINE Alu 1 303 -9 1640 140 45 21 chr4 44336058 44336344 -157992003 + AluSx SINE Alu 1 293 -19 706 97 32 0 chr4 44336348 44336472 -157991875 + GA-rich Low_complexity Low_complexity 1 128 0 2115 128 0 0 chr4 44337187 44337485 -157990862 + AluSx SINE Alu 1 298 -14 733 220 177 5 chr4 44337609 44337795 -157990552 + MER20 DNA MER1_type 1 218 -1 2092 91 17 3 chr4 44337893 44338189 -157990158 + AluSp SINE Alu 1 300 -13 369 164 0 0 chr4 44338313 44338368 -157989979 - MER81 DNA DNA -2 112 58 186 167 0 0 chr4 44338836 44338872 -157989475 + T-rich Low_complexity Low_complexity 1 36 0 429 131 12 83 chr4 44338923 44339007 -157989340 - AluJo SINE Alu -167 145 68 821 134 0 54 chr4 44339188 44339337 -157989010 - FRAM SINE Alu -18 158 18 854 235 54 5 chr4 44339404 44339608 -157988739 - MIR SINE MIR -26 236 23 309 313 46 23 chr4 44340503 44340634 -157987713 + L2 LINE L2 2603 2736 -578 1689 150 21 4 chr4 44340661 44340962 -157987385 + AluSp SINE Alu 1 306 0 408 322 187 0 chr4 44341257 44341589 -157986758 + L2 LINE L2 1647 2040 -1274 407 274 22 115 chr4 44341837 44341945 -157986402 + L2 LINE L2 2611 2727 -587 2040 119 0 7 chr4 44341945 44342239 -157986108 + AluSx SINE Alu 3 294 -18 2207 99 0 0 chr4 44342248 44342542 -157985805 + AluSg SINE Alu 1 294 -16 407 274 22 115 chr4 44342542 44342693 -157985654 + L2 LINE L2 2735 2855 -459 387 0 0 0 chr4 44342702 44342745 -157985602 + (TG)n Simple_repeat Simple_repeat 2 44 0 2057 91 4 4 chr4 44342746 44343021 -157985326 - AluSq SINE Alu -33 280 6 816 221 122 9 chr4 44343082 44343295 -157985052 - AluJo SINE Alu 0 312 76 244 175 0 0 chr4 44343295 44343335 -157985012 - Alu SINE Alu -128 175 136 2148 117 0 3 chr4 44343346 44343653 -157984694 - AluSx SINE Alu -6 306 1 2070 64 0 21 chr4 44343653 44343933 -157984414 - AluY SINE Alu -1 310 37 2415 53 0 0 chr4 44343940 44344239 -157984108 - AluY SINE Alu -2 309 11 1496 153 45 8 chr4 44344246 44344514 -157983833 - L1PA13 LINE L1 0 6163 5886 357 298 69 38 chr4 44344534 44344665 -157983682 + MIR3 SINE MIR 25 159 -49 746 94 0 27 chr4 44344769 44344826 -157983521 - L1PA13 LINE L1 -281 5882 5826 1651 143 82 0 chr4 44344826 44345106 -157983241 - AluJb SINE Alu -9 303 1 746 94 0 27 chr4 44345106 44345158 -157983189 - L1PA13 LINE L1 -337 5826 5774 2461 65 0 0 chr4 44345161 44345468 -157982879 - AluY SINE Alu -4 307 1 1148 259 19 49 chr4 44345509 44345879 -157982468 + L2 LINE L2 2953 3311 -2 184 246 61 44 chr4 44345904 44346018 -157982329 + L2 LINE L2 2468 2583 -731 238 308 116 30 chr4 44346101 44346299 -157982048 + L2 LINE L2 2807 3021 -251 195 319 66 11 chr4 44346414 44346505 -157981842 + L2 LINE L2 3143 3238 -75 2031 116 36 7 chr4 44346538 44346898 -157981449 - AluSq SINE Alu 0 369 1 272 338 0 0 chr4 44346901 44346975 -157981372 + L2 LINE L2 3231 3304 -9 491 272 129 32 chr4 44347000 44347217 -157981130 - MIR SINE MIR 0 262 25 952 80 7 33 chr4 44347240 44347390 -157980957 - L1MA5 LINE L1 -3 6297 6152 35 0 0 0 chr4 44347400 44347435 -157980912 + AT_rich Low_complexity Low_complexity 1 35 0 1405 172 55 45 chr4 44347435 44347579 -157980768 - AluJb SINE Alu -19 293 152 2090 71 67 0 chr4 44347579 44347862 -157980485 - AluSx SINE Alu -10 302 1 1405 172 55 45 chr4 44347862 44348007 -157980340 - AluJb SINE Alu -160 152 1 742 182 0 0 chr4 44348249 44348370 -157979977 - FLAM_A SINE Alu -12 121 1 349 246 0 0 chr4 44348510 44348579 -157979768 - L2 LINE L2 -2 3311 3243 921 230 60 17 chr4 44348655 44348890 -157979457 + MIR SINE MIR 15 259 -3 21 57 0 0 chr4 44349483 44349518 -157978829 + AT_rich Low_complexity Low_complexity 1 35 0 2187 88 0 10 chr4 44349633 44349928 -157978419 + AluSg SINE Alu 1 292 -18 822 160 0 0 chr4 44349997 44350116 -157978231 + AluJb SINE Alu 2 120 -192 720 57 0 0 chr4 44350305 44350393 -157977954 - AluS SINE Alu -223 89 2 2154 105 0 7 chr4 44350495 44350791 -157977556 + AluSc SINE Alu 1 294 -15 35 54 0 0 chr4 44350902 44350958 -157977389 + AT_rich Low_complexity Low_complexity 1 56 0 1674 167 26 7 chr4 44351178 44351484 -157976863 + AluJb SINE Alu 1 312 0 790 159 68 25 chr4 44351500 44351663 -157976684 + FRAM SINE Alu 1 169 -7 2282 94 0 0 chr4 44351747 44352054 -157976293 + AluSg SINE Alu 1 307 -3 393 207 58 58 chr4 44352064 44352185 -157976162 + L2 LINE L2 2300 2420 -894 1518 174 8 4 chr4 44352366 44352625 -157975722 + AluJo SINE Alu 1 260 -52 388 315 61 52 chr4 44352650 44352953 -157975394 + L2 LINE L2 2742 3066 -247 2033 118 7 0 chr4 44353135 44353440 -157974907 + AluSx SINE Alu 1 307 -5 2166 88 3 3 chr4 44353445 44353740 -157974607 + AluSg SINE Alu 1 295 -15 857 128 0 40 chr4 44353904 44354053 -157974294 - FLAM_C SINE Alu 0 143 1 1025 258 135 45 chr4 44355283 44355817 -157972530 - L2 LINE L2 0 3313 2699 2087 123 0 0 chr4 44355817 44356110 -157972237 + AluSx SINE Alu 17 293 -19 1025 258 135 45 chr4 44356110 44356204 -157972143 - L2 LINE L2 -614 2699 2615 997 195 0 0 chr4 44356728 44356892 -157971455 - FAM SINE Alu -11 164 1 234 0 0 0 chr4 44357058 44357084 -157971263 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1713 163 14 0 chr4 44357087 44357364 -157970983 - AluSx SINE Alu -31 281 1 659 182 200 36 chr4 44357367 44357532 -157970815 - MIR SINE MIR -65 197 6 2297 87 37 0 chr4 44358063 44358363 -157969984 - AluSq SINE Alu -2 311 1 21 0 0 0 chr4 44358621 44358642 -157969705 + AT_rich Low_complexity Low_complexity 1 21 0 306 130 0 0 chr4 44364240 44364286 -157964061 + MIR SINE MIR 189 234 -28 371 253 4 29 chr4 44364352 44364456 -157963891 + MIR SINE MIR 20 128 -80 378 188 103 43 chr4 44364953 44365070 -157963277 - MIR SINE MIR -51 211 88 24 0 0 0 chr4 44365133 44365157 -157963190 + AT_rich Low_complexity Low_complexity 1 24 0 2183 108 0 0 chr4 44365679 44365975 -157962372 + AluSx SINE Alu 2 297 -15 25 31 0 0 chr4 44365978 44366010 -157962337 + AT_rich Low_complexity Low_complexity 1 32 0 28 0 0 0 chr4 44366383 44366411 -157961936 + AT_rich Low_complexity Low_complexity 1 28 0 1611 118 4 21 chr4 44366664 44366901 -157961446 - AluSg/x SINE Alu -8 304 72 1906 130 0 4 chr4 44367018 44367288 -157961059 + AluSq SINE Alu 25 293 -20 2870 217 36 16 chr4 44367293 44368043 -157960304 + L1M4 LINE L1 2397 3161 -2985 202 102 0 61 chr4 44368186 44368235 -157960112 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 2008 129 0 7 chr4 44368827 44369122 -157959225 - AluSx SINE Alu -19 293 1 2105 115 51 3 chr4 44369134 44369429 -157958918 - AluSx SINE Alu -3 309 1 267 340 62 0 chr4 44370081 44370178 -157958169 - MIR SINE MIR -71 137 35 1629 174 3 20 chr4 44370344 44370637 -157957710 - AluJo SINE Alu -24 288 1 2229 111 0 3 chr4 44370662 44370959 -157957388 - AluSx SINE Alu -14 298 3 1540 209 137 36 chr4 44370980 44371453 -157956894 - MER113 DNA MER1_type? 0 521 1 2553 63 3 0 chr4 44371522 44371822 -157956525 - AluSp SINE Alu -12 301 1 1625 147 26 15 chr4 44372389 44372654 -157955693 + AluJo SINE Alu 1 268 -44 2445 54 0 3 chr4 44373767 44374063 -157954284 - AluY SINE Alu -16 295 1 265 363 0 0 chr4 44374086 44374166 -157954181 + L2 LINE L2 3193 3272 0 726 220 174 18 chr4 44374267 44374485 -157953862 + MLT1J LTR MaLR 11 262 -249 292 323 10 31 chr4 44374576 44374672 -157953675 + MER5A DNA MER1_type 1 94 -95 188 306 188 24 chr4 44374609 44374694 -157953653 - MER5A DNA MER1_type -22 167 69 * 822 114 0 53 chr4 44374701 44374832 -157953515 + FLAM_C SINE Alu 2 125 -8 2162 101 0 0 chr4 44374843 44375130 -157953217 + AluSx SINE Alu 6 292 -20 22 0 0 0 chr4 44375137 44375159 -157953188 + AT_rich Low_complexity Low_complexity 1 22 0 733 179 0 30 chr4 44376804 44376938 -157951409 - FLAM_C SINE Alu -12 131 2 1518 193 7 11 chr4 44377227 44377507 -157950840 + AluJb SINE Alu 1 279 -33 438 243 36 50 chr4 44377605 44377745 -157950602 - MARNA DNA Mariner -378 208 71 777 195 0 0 chr4 44377810 44377928 -157950419 + AluJo/FLAM SINE Alu 1 118 -194 2463 85 0 0 chr4 44377928 44378235 -157950112 - AluY SINE Alu -4 307 1 24 0 0 0 chr4 44378244 44378268 -157950079 + AT_rich Low_complexity Low_complexity 1 24 0 1790 120 22 11 chr4 44378785 44379059 -157949288 - AluSg1 SINE Alu -5 304 28 2455 107 72 17 chr4 44379212 44379557 -157948790 + THE1B LTR MaLR 1 364 0 2144 107 3 17 chr4 44379656 44379955 -157948392 - AluSx SINE Alu -9 303 9 33 0 0 23 chr4 44380605 44380625 -157947722 + AT_rich Low_complexity Low_complexity 1 20 -23 2165 93 4 0 chr4 44380625 44380903 -157947444 - AluY SINE Alu -32 279 1 33 0 0 23 chr4 44380903 44380926 -157947421 + AT_rich Low_complexity Low_complexity 20 43 0 2264 201 7 21 chr4 44381188 44381728 -157946619 - MER77 LTR ERV1 -3 602 19 916 212 88 9 chr4 44382082 44382299 -157946048 + MIR SINE MIR 8 241 -21 2080 154 5 60 chr4 44382305 44382464 -157945883 + MER47A DNA MER2_type 4 170 -2153 2202 104 0 0 chr4 44382464 44382777 -157945570 + AluSg SINE Alu 1 313 0 2080 154 5 60 chr4 44382777 44383000 -157945347 + MER47A DNA MER2_type 170 366 0 544 175 41 6 chr4 44383051 44383222 -157945125 + (TA)n Simple_repeat Simple_repeat 2 178 0 273 57 0 0 chr4 44383241 44383276 -157945071 + (CA)n Simple_repeat Simple_repeat 2 36 0 279 0 0 0 chr4 44383418 44383449 -157944898 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2055 115 7 4 chr4 44383456 44383735 -157944612 - AluSq SINE Alu -33 280 1 801 181 8 0 chr4 44384059 44384192 -157944155 + AluSq/x SINE Alu 1 134 -179 29 47 0 0 chr4 44384192 44384235 -157944112 + AT_rich Low_complexity Low_complexity 1 43 0 1205 151 0 0 chr4 44384235 44384414 -157943933 + AluJb SINE Alu 118 296 -16 2121 113 0 3 chr4 44384544 44384847 -157943500 + AluSx SINE Alu 2 303 0 426 290 43 29 chr4 44384923 44385061 -157943286 + L2 LINE L2 2899 3038 -275 787 199 68 52 chr4 44385061 44385274 -157943073 + L1M4 LINE L1 3530 3749 -2397 2159 129 10 0 chr4 44385274 44385576 -157942771 + AluSx SINE Alu 1 305 -7 787 199 68 52 chr4 44385576 44385613 -157942734 + L1M4 LINE L1 3749 3784 -2362 2389 73 10 7 chr4 44386096 44386397 -157941950 + AluSp SINE Alu 1 302 -11 198 0 0 0 chr4 44386605 44386627 -157941720 + (GAATG)n Simple_repeat Simple_repeat 3 24 0 300 248 58 41 chr4 44387307 44387428 -157940919 + MIR SINE MIR 140 262 0 1356 220 77 34 chr4 44387431 44387781 -157940566 + MLT1A1 LTR MaLR 1 365 0 650 232 110 69 chr4 44388006 44388149 -157940198 - MIR SINE MIR 0 262 103 2053 107 0 182 chr4 44388149 44388561 -157939786 + MER1B DNA MER1_type 1 337 0 650 232 110 69 chr4 44388561 44388663 -157939684 - MIR SINE MIR -159 103 7 26 0 0 0 chr4 44389564 44389590 -157938757 + AT_rich Low_complexity Low_complexity 1 26 0 24883 26 2 0 chr4 44389590 44393157 -157935190 - L1PA3 LINE L1 0 6155 2586 2083 117 40 0 chr4 44393707 44394005 -157934342 - AluSx SINE Alu -2 310 1 662 320 79 37 chr4 44394477 44394805 -157933542 + L2 LINE L2 2369 2710 -604 616 305 67 22 chr4 44394811 44395080 -157933267 + L1MEc LINE L1 49 329 -6067 362 252 30 38 chr4 44395086 44395217 -157933130 - L1M4 LINE L1 -2259 3887 3758 2341 95 3 3 chr4 44395443 44395749 -157932598 + AluSp SINE Alu 1 306 -7 2129 160 30 0 chr4 44395752 44396089 -157932258 - MER7A DNA MER2_type 0 346 2 2403 94 0 0 chr4 44396286 44396585 -157931762 + AluSc SINE Alu 1 299 -10 216 184 0 0 chr4 44397221 44397270 -157931077 + (TA)n Simple_repeat Simple_repeat 2 50 0 654 303 61 17 chr4 44398663 44398894 -157929453 - MIR SINE MIR -2 260 20 2268 111 0 0 chr4 44398918 44399215 -157929132 + AluSx SINE Alu 1 297 -15 2198 88 30 0 chr4 44399314 44399610 -157928737 - AluSq SINE Alu -8 305 1 187 269 0 39 chr4 44399730 44399782 -157928565 + L2 LINE L2 3137 3186 -86 22 80 0 0 chr4 44399851 44399901 -157928446 + AT_rich Low_complexity Low_complexity 1 50 0 30 19 0 39 chr4 44400012 44400043 -157928304 + AT_rich Low_complexity Low_complexity 1 31 -19 757 167 18 0 chr4 44400043 44400157 -157928190 - FLAM_A SINE Alu -17 116 1 30 19 0 39 chr4 44400157 44400177 -157928170 + AT_rich Low_complexity Low_complexity 31 50 0 24 77 0 0 chr4 44400222 44400274 -157928073 + AT_rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chr4 44400683 44400711 -157927636 + AT_rich Low_complexity Low_complexity 1 28 0 1851 176 0 10 chr4 44401122 44401434 -157926913 - AluJb SINE Alu -3 309 1 301 311 15 8 chr4 44401527 44401659 -157926688 + (TA)n Simple_repeat Simple_repeat 1 133 0 227 140 0 88 chr4 44401688 44401745 -157926602 + LTR66 LTR ERVL 390 441 -169 1223 174 7 51 chr4 44401786 44402080 -157926267 + L1MEc LINE L1 391 671 -5442 264 104 21 42 chr4 44402081 44402120 -157926227 - Alu SINE Alu -255 47 8 2263 116 3 0 chr4 44402120 44402423 -157925924 - AluSp SINE Alu -9 304 1 644 170 0 10 chr4 44402597 44402697 -157925650 - AluS SINE Alu -213 100 2 1878 174 3 0 chr4 44402783 44403093 -157925254 - AluJo SINE Alu -1 311 1 596 274 113 8 chr4 44403108 44403374 -157924973 + L1MEc LINE L1 2279 2572 -3643 4593 178 57 38 chr4 44403386 44403667 -157924680 + L1MB7 LINE L1 4224 4498 -1686 1536 137 78 19 chr4 44403667 44403923 -157924424 + AluJb SINE Alu 40 310 -2 1946 148 7 7 chr4 44403933 44404230 -157924117 + AluJo SINE Alu 1 297 -15 4593 178 57 38 chr4 44404230 44404913 -157923434 + L1MB7 LINE L1 4506 5175 -1009 2247 118 0 0 chr4 44404913 44405209 -157923138 + AluSx SINE Alu 1 296 -16 4593 178 57 38 chr4 44405209 44406112 -157922235 + L1MB7 LINE L1 5175 6128 -56 550 263 130 15 chr4 44406119 44406389 -157921958 + L1MEc LINE L1 2558 2858 -3357 994 204 15 0 chr4 44406399 44406595 -157921752 - AluJo SINE Alu -25 287 89 464 259 77 67 chr4 44406628 44406714 -157921633 + L1MEc LINE L1 2851 2935 -3280 2381 85 0 3 chr4 44406714 44407008 -157921339 - AluSq SINE Alu -20 293 1 464 259 77 67 chr4 44407008 44407234 -157921113 + L1MEc LINE L1 2935 3166 -3049 229 275 99 18 chr4 44408352 44408523 -157919824 + L1MEc LINE L1 3113 3297 -2918 1221 60 0 30 chr4 44408525 44408691 -157919656 + SVA Other Other 1226 1386 0 29 60 0 0 chr4 44408705 44408755 -157919592 + AT_rich Low_complexity Low_complexity 1 50 0 385 243 95 40 chr4 44408798 44408946 -157919401 + L1MEc LINE L1 3374 3529 -2686 312 250 101 101 chr4 44408996 44409164 -157919183 + L1MEc LINE L1 3551 3718 -2497 2307 101 0 10 chr4 44409173 44409481 -157918866 - AluSg SINE Alu -5 305 1 1155 239 173 12 chr4 44409481 44409816 -157918531 - L2 LINE L2 -891 2423 2035 417 259 130 6 chr4 44409832 44409994 -157918353 + LTR50 LTR ERVL 1 182 -613 231 202 30 111 chr4 44410161 44410260 -157918087 + LTR50 LTR ERVL 569 659 -136 520 187 0 19 chr4 44410308 44410415 -157917932 + L1MC5 LINE L1 7081 7185 -776 1466 209 120 38 chr4 44410521 44411070 -157917277 + L1MC5 LINE L1 7334 7927 -34 259 237 92 59 chr4 44411143 44411295 -157917052 - L2 LINE L2 -1670 1644 1488 498 308 167 0 chr4 44411478 44411699 -157916648 - MIR SINE MIR -3 259 2 28 29 0 0 chr4 44412135 44412170 -157916177 + AT_rich Low_complexity Low_complexity 1 35 0 215 247 141 0 chr4 44412195 44412280 -157916067 - MIR SINE MIR 0 262 166 420 316 46 13 chr4 44412371 44412523 -157915824 - MIR SINE MIR -89 173 17 25 31 0 0 chr4 44412649 44412681 -157915666 + AT_rich Low_complexity Low_complexity 1 32 0 822 272 25 8 chr4 44412682 44412921 -157915426 - MIR SINE MIR -7 255 13 602 344 47 0 chr4 44413109 44413321 -157915026 - MIR SINE MIR -3 259 38 2288 100 0 3 chr4 44413818 44414128 -157914219 + AluSx SINE Alu 1 309 -3 746 279 51 14 chr4 44414369 44414584 -157913763 - MIR SINE MIR -12 250 28 288 0 0 0 chr4 44414760 44414792 -157913555 + (TG)n Simple_repeat Simple_repeat 2 33 0 425 331 7 0 chr4 44414792 44414934 -157913413 + MIR SINE MIR 71 213 -49 198 0 0 0 chr4 44415071 44415093 -157913254 + (A)n Simple_repeat Simple_repeat 1 22 0 2073 127 10 0 chr4 44415925 44416216 -157912131 + AluSx SINE Alu 1 294 -18 1754 183 3 16 chr4 44416542 44416853 -157911494 - AluJo SINE Alu -5 307 1 441 246 44 19 chr4 44416989 44417183 -157911164 - MIR SINE MIR -19 243 37 325 213 222 0 chr4 44417677 44417785 -157910562 + L2 LINE L2 3182 3313 0 2357 70 13 0 chr4 44418470 44418768 -157909579 - AluSx SINE Alu -10 302 1 607 242 8 0 chr4 44418891 44419019 -157909328 - FLAM_A SINE Alu -4 129 1 741 243 60 0 chr4 44419284 44419469 -157908878 + MER58A DNA MER1_type 1 196 -28 1239 158 18 35 chr4 44419472 44419700 -157908647 + AluJb SINE Alu 69 292 -20 238 147 0 0 chr4 44419713 44419747 -157908600 + MER58A DNA MER1_type 191 224 0 441 237 42 17 chr4 44419791 44419909 -157908438 - MER45A DNA AcHobo 0 178 58 201 74 0 0 chr4 44420457 44420484 -157907863 + (TA)n Simple_repeat Simple_repeat 1 27 0 2086 105 34 7 chr4 44420822 44421116 -157907231 + AluSx SINE Alu 1 302 -10 1899 147 3 13 chr4 44421389 44421688 -157906659 - AluSx SINE Alu -16 296 1 188 294 207 26 chr4 44421837 44422022 -157906325 + L2 LINE L2 2482 2632 -681 188 200 25 0 chr4 44422022 44422062 -157906285 - L3 LINE CR1 -1144 433 393 188 294 207 26 chr4 44422062 44422198 -157906149 + L2 LINE L2 2632 2742 -571 2218 111 3 23 chr4 44422198 44422505 -157905842 - AluSx SINE Alu -11 301 1 188 294 207 26 chr4 44422505 44422785 -157905562 + L2 LINE L2 2742 3278 -35 183 270 40 40 chr4 44422908 44422982 -157905365 - L2 LINE L2 -3 3310 3237 2309 108 0 6 chr4 44423253 44423568 -157904779 + AluSq SINE Alu 1 313 0 323 270 81 63 chr4 44423997 44424108 -157904239 + L2 LINE L2 3156 3268 -4 2227 118 0 6 chr4 44424200 44424514 -157903833 + AluSx SINE Alu 1 312 0 24 77 0 0 chr4 44425911 44425963 -157902384 + GC_rich Low_complexity Low_complexity 1 52 0 2319 77 7 3 chr4 44426218 44426518 -157901829 - AluSx SINE Alu -11 301 1 1086 61 0 0 chr4 44427096 44427227 -157901120 + AluSg/x SINE Alu 176 306 -6 230 184 82 0 chr4 44427437 44427486 -157900861 - L2 LINE L2 -2 3270 3218 569 120 150 10 chr4 44428036 44428136 -157900211 - AluSc SINE Alu -14 295 182 885 120 0 0 chr4 44428136 44428253 -157900094 - AluSq/x SINE Alu -195 117 1 500 235 65 111 chr4 44428253 44428771 -157899576 + L2 LINE L2 2616 3111 -161 1978 237 51 16 chr4 44428919 44429413 -157898934 + MER77 LTR ERV1 78 588 -17 225 359 0 13 chr4 44429437 44429515 -157898832 + L2 LINE L2 3233 3309 -4 1134 127 5 99 chr4 44429762 44429817 -157898530 + AluJo SINE Alu 83 142 -170 2304 99 3 0 chr4 44429817 44430110 -157898237 + AluSx SINE Alu 1 294 -18 1134 127 5 99 chr4 44430110 44430275 -157898072 + AluJo SINE Alu 142 282 -30 207 100 0 0 chr4 44430278 44430308 -157898039 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1476 131 0 0 chr4 44431327 44431541 -157896806 + AluSg SINE Alu 1 214 -96 2064 138 0 0 chr4 44431765 44432054 -157896293 + AluSx SINE Alu 1 289 -23 384 272 68 34 chr4 44432227 44432374 -157895973 + MIR SINE MIR 2 153 -109 27 29 0 0 chr4 44432444 44432478 -157895869 + AT_rich Low_complexity Low_complexity 1 34 0 210 307 13 0 chr4 44434488 44434563 -157893784 - MIR SINE MIR -10 252 177 660 266 121 94 chr4 44434600 44434692 -157893655 + L2 LINE L2 10 98 -3216 1780 120 116 0 chr4 44434692 44434959 -157893388 + AluSx SINE Alu 1 298 -14 1567 176 41 10 chr4 44434965 44435255 -157893092 + AluJo SINE Alu 1 299 -13 660 266 121 94 chr4 44435255 44435527 -157892820 + L2 LINE L2 102 391 -2923 3317 276 88 12 chr4 44435530 44436923 -157891424 + L2 LINE L2 1815 3313 0 521 238 79 8 chr4 44436924 44437050 -157891297 - MIR SINE MIR -100 162 28 2113 108 0 11 chr4 44437680 44437967 -157890380 - AluSx SINE Alu -2 310 27 855 157 0 15 chr4 44437984 44438118 -157890229 + FLAM_C SINE Alu 1 132 -1 203 363 0 25 chr4 44438287 44438367 -157889980 + L3 LINE CR1 1471 1548 -29 207 337 24 0 chr4 44438376 44438459 -157889888 - L3 LINE CR1 -11 1566 1482 237 329 57 7 chr4 44438722 44438862 -157889485 - L1MC/D LINE L1 -2289 5519 5373 495 235 7 46 chr4 44438910 44438950 -157889397 - Charlie2 DNA MER1_type 0 2862 2822 2259 118 0 0 chr4 44438950 44439246 -157889101 - AluSx SINE Alu -16 296 1 495 235 7 46 chr4 44439246 44439358 -157888989 - Charlie2 DNA MER1_type -40 2822 2716 * 577 202 119 41 chr4 44439333 44439551 -157888796 - Charlie2a DNA MER1_type -1163 1699 1465 434 148 0 11 chr4 44439607 44439695 -157888652 + (GGGA)n Simple_repeat Simple_repeat 4 90 0 557 180 98 0 chr4 44439773 44439895 -157888452 - Charlie2a DNA MER1_type -2553 309 176 352 299 103 0 chr4 44439908 44440025 -157888322 + MIR SINE MIR 133 261 -1 456 250 161 88 chr4 44440045 44440222 -157888125 - L1MC/D LINE L1 -798 5348 5185 2094 143 0 13 chr4 44440222 44440536 -157887811 + AluJb SINE Alu 1 310 -2 456 250 161 88 chr4 44440536 44440929 -157887418 - L1MC/D LINE L1 -961 5185 4736 272 232 218 35 chr4 44441267 44441409 -157886938 + MER112 DNA MER1_type 12 179 -81 6563 34 4 0 chr4 44441409 44442169 -157886178 - L1PA3 LINE L1 -14 6141 5379 598 123 9 61 chr4 44442219 44442333 -157886014 - L1MB8 LINE L1 -2 6176 6069 695 204 15 0 chr4 44442333 44442470 -157885877 - L1M4 LINE L1 -1158 4988 4850 722 153 368 0 chr4 44442478 44442641 -157885706 + AluJo SINE Alu 85 307 -5 334 187 11 110 chr4 44442646 44442737 -157885610 - L1M4 LINE L1 -1296 4850 4769 2433 74 3 0 chr4 44442764 44443060 -157885287 + AluSx SINE Alu 1 297 -15 262 272 0 29 chr4 44443060 44443163 -157885184 - L1M4 LINE L1 -2197 3949 3850 1064 284 33 20 chr4 44443339 44443746 -157884601 - HERV16 LTR ERVL -3536 1460 1083 970 243 187 29 chr4 44443746 44444195 -157884152 - MLT1E3 LTR MaLR 0 624 105 857 195 17 59 chr4 44444203 44444439 -157883908 - MLT1C LTR MaLR 0 467 242 1022 159 0 0 chr4 44444464 44444615 -157883732 - AluSg/x SINE Alu -28 284 134 2096 108 35 0 chr4 44444615 44444901 -157883446 - AluSq SINE Alu -17 296 1 29 0 0 0 chr4 44444971 44445000 -157883347 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 44445456 44445487 -157882860 + AT_rich Low_complexity Low_complexity 1 31 0 1138 69 0 14 chr4 44445954 44446099 -157882248 - AluSg/x SINE Alu -11 298 156 2078 112 41 0 chr4 44446366 44446660 -157881687 + AluSx SINE Alu 1 306 -6 186 231 0 0 chr4 44448744 44448783 -157879564 + MIR3 SINE MIR 157 195 -13 1926 150 0 25 chr4 44448894 44449208 -157879139 + AluJb SINE Alu 1 306 -6 1752 117 98 11 chr4 44449891 44450165 -157878182 + AluSx SINE Alu 1 298 -14 27 29 0 0 chr4 44451891 44451925 -157876422 + AT_rich Low_complexity Low_complexity 1 34 0 262 300 145 25 chr4 44452993 44453210 -157875137 + MIR SINE MIR 1 228 -34 25 0 0 0 chr4 44453495 44453520 -157874827 + AT_rich Low_complexity Low_complexity 1 25 0 471 217 67 67 chr4 44455268 44455462 -157872885 + MIR SINE MIR 57 256 -6 2053 135 3 3 chr4 44455732 44456036 -157872311 + AluJb SINE Alu 1 304 -8 1172 178 69 35 chr4 44456038 44456269 -157872078 - MER8 DNA MER2_type 0 239 1 742 149 0 0 chr4 44457496 44457603 -157870744 - FLAM_A SINE Alu -18 124 18 2179 117 7 7 chr4 44457783 44458092 -157870255 - AluSx SINE Alu -3 309 1 367 153 0 0 chr4 44458172 44458231 -157870116 + FLAM SINE Alu 73 131 -2 1013 139 6 0 chr4 44458417 44458583 -157869764 - FRAM SINE Alu -10 166 1 213 188 106 71 chr4 44458649 44458734 -157869613 + L2 LINE L2 3139 3226 -46 2107 99 3 3 chr4 44458991 44459295 -157869052 + AluSq SINE Alu 1 304 0 2079 90 14 0 chr4 44459574 44459862 -157868485 - AluSp SINE Alu -21 292 1 467 284 76 41 chr4 44459961 44460158 -157868189 + MIR SINE MIR 3 206 -56 572 271 64 0 chr4 44461766 44461906 -157866441 + MIR SINE MIR 2 150 -112 781 103 12 6 chr4 44462617 44462879 -157865468 + AluSq SINE Alu 1 312 -1 2956 192 28 49 chr4 44463087 44463193 -157865154 - L1MB7 LINE L1 -7 6177 6070 1840 153 0 10 chr4 44463193 44463481 -157864866 - AluJb SINE Alu -21 291 7 2956 192 28 49 chr4 44463481 44464062 -157864285 - L1MB7 LINE L1 -114 6070 5505 1518 127 116 15 chr4 44465070 44465337 -157863010 - AluSg SINE Alu -16 294 1 705 128 18 0 chr4 44465353 44465462 -157862885 - HY1 scRNA scRNA -1 111 1 639 228 85 38 chr4 44466300 44466511 -157861836 + MIR SINE MIR 31 251 -11 2160 133 36 30 chr4 44466518 44466880 -157861467 + THE1B LTR MaLR 1 364 0 244 233 17 17 chr4 44467186 44467246 -157861101 - MIR SINE MIR 0 262 203 576 197 8 39 chr4 44467248 44467375 -157860972 + L2 LINE L2 3191 3313 0 660 307 83 80 chr4 44467685 44468489 -157859858 + L3 LINE CR1 768 1574 -3 1303 201 3 98 chr4 44469483 44469801 -157858546 + AluJo SINE Alu 1 288 -14 2069 90 7 13 chr4 44469818 44470118 -157858229 + AluSq SINE Alu 5 302 -11 22 0 0 0 chr4 44470688 44470710 -157857637 + AT_rich Low_complexity Low_complexity 1 22 0 372 43 0 0 chr4 44470710 44470756 -157857591 + (CA)n Simple_repeat Simple_repeat 2 47 0 288 276 195 8 chr4 44471440 44471563 -157856784 + L2 LINE L2 3123 3268 -4 466 286 130 6 chr4 44472322 44472483 -157855864 + MIR3 SINE MIR 18 198 -10 966 210 80 5 chr4 44473252 44473626 -157854721 + MLT1D LTR MaLR 45 505 0 2336 54 7 0 chr4 44473695 44473990 -157854357 + AluY SINE Alu 3 299 -12 1867 144 0 3 chr4 44474892 44475209 -157853138 + AluSx SINE Alu 1 316 0 182 311 16 0 chr4 44476141 44476202 -157852145 + MIR3 SINE MIR 113 174 -34 1968 122 0 11 chr4 44476834 44477027 -157851320 - AluSx SINE Alu 0 326 136 2297 69 3 7 chr4 44477027 44477331 -157851016 - AluSc SINE Alu -6 303 1 1968 122 0 11 chr4 44477331 44477465 -157850882 - AluSx SINE Alu -190 136 2 201 333 118 20 chr4 44477626 44477728 -157850619 - L3 LINE CR1 -73 1504 1393 1100 139 0 0 chr4 44477774 44477940 -157850407 - FRAM SINE Alu -11 165 1 327 330 0 0 chr4 44477950 44478038 -157850309 - L3 LINE CR1 -199 1378 1291 202 256 0 0 chr4 44478246 44478285 -157850062 + MIR SINE MIR 223 261 -1 2322 91 0 0 chr4 44478355 44478662 -157849685 - AluSx SINE Alu -5 307 1 1841 141 0 3 chr4 44480367 44480677 -157847670 - AluSx SINE Alu 0 309 1 207 0 0 0 chr4 44480921 44480944 -157847403 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 342 346 43 39 chr4 44482080 44482288 -157846059 + L1ME4a LINE L1 5843 6051 -70 400 302 101 0 chr4 44482460 44482609 -157845738 - MIR SINE MIR -80 182 19 219 211 18 35 chr4 44482908 44482965 -157845382 - L2 LINE L2 -1 3271 3216 316 240 73 31 chr4 44483386 44483482 -157844865 + MIR SINE MIR 44 143 -65 243 0 0 0 chr4 44484286 44484313 -157844034 + (A)n Simple_repeat Simple_repeat 1 27 0 421 139 23 47 chr4 44484996 44485082 -157843265 + AluSg/x SINE Alu 215 298 -12 306 333 40 0 chr4 44485307 44485406 -157842941 + L2 LINE L2 3137 3239 -33 410 273 137 19 chr4 44485558 44485719 -157842628 - MER5A DNA MER1_type 0 189 10 2160 108 7 3 chr4 44485818 44486124 -157842223 + AluSx SINE Alu 1 307 -5 1856 129 11 0 chr4 44486184 44486498 -157841849 + AluSc SINE Alu 1 317 0 2117 137 3 0 chr4 44487058 44487365 -157840982 - AluSx SINE Alu -4 308 1 1056 218 120 0 chr4 44487677 44487943 -157840404 - L1ME1 LINE L1 -170 5996 5699 * 1598 205 18 71 chr4 44487942 44488391 -157839956 + L1ME LINE L1 5290 5714 -452 1991 96 0 113 chr4 44488932 44489267 -157839080 - AluSx SINE Alu -5 297 1 654 201 162 7 chr4 44489312 44489466 -157838881 + MER58A DNA MER1_type 46 223 -1 251 320 160 28 chr4 44489541 44489722 -157838625 - MIR SINE MIR -7 255 51 327 167 0 17 chr4 44490023 44490083 -157838264 - MER69 DNA AcHobo 0 2526 2468 347 161 86 49 chr4 44490106 44490187 -157838160 - MER69 DNA AcHobo -1083 143 60 891 173 64 0 chr4 44490194 44490367 -157837980 - AluJo SINE Alu -127 185 2 816 226 21 21 chr4 44490367 44490553 -157837794 + MER5A DNA MER1_type 4 189 0 495 211 0 0 chr4 44491087 44491182 -157837165 - U13 snRNA snRNA -9 95 1 1781 163 13 0 chr4 44491235 44491536 -157836811 - AluSx SINE Alu -7 305 1 1615 190 0 7 chr4 44493495 44493790 -157834557 - AluJb SINE Alu -19 293 1 892 288 73 55 chr4 44494069 44494187 -157834160 + L1MEd LINE L1 553 667 -5643 1974 86 60 20 chr4 44494187 44494488 -157833859 - AluSq SINE Alu 0 313 1 892 288 73 55 chr4 44494488 44494644 -157833703 + L1MEd LINE L1 667 819 -5491 775 197 0 0 chr4 44494644 44494771 -157833576 - FLAM_A SINE Alu -6 127 1 892 288 73 55 chr4 44494771 44495236 -157833111 + L1MEd LINE L1 819 1332 -4978 1998 166 37 6 chr4 44495236 44495585 -157832762 + MLT1A1 LTR MaLR 3 362 -3 892 288 73 55 chr4 44495585 44495890 -157832457 + L1MEd LINE L1 1332 1630 -4680 1475 196 29 7 chr4 44495918 44496194 -157832153 + AluJo SINE Alu 1 282 -30 1464 84 0 10 chr4 44496195 44496398 -157831949 + AluY SINE Alu 2 202 -109 1230 158 37 46 chr4 44496539 44496780 -157831567 + AluJo SINE Alu 62 300 -12 252 288 123 46 chr4 44497481 44497700 -157830647 - MIR SINE MIR -9 253 18 315 186 86 0 chr4 44497797 44497867 -157830480 + MLT1D LTR MaLR 1 76 -429 225 237 0 51 chr4 44497872 44497909 -157830438 + (TA)n Simple_repeat Simple_repeat 1 35 -21 1546 112 126 11 chr4 44497909 44498178 -157830169 - AluSx SINE Alu -12 300 1 225 237 0 51 chr4 44498178 44498199 -157830148 + (TA)n Simple_repeat Simple_repeat 35 56 0 543 184 0 19 chr4 44498204 44498307 -157830040 - MLT1D LTR MaLR -321 184 84 1988 125 0 10 chr4 44498322 44498619 -157829728 - AluSx SINE Alu -18 294 1 328 325 72 6 chr4 44498709 44498875 -157829472 + MIR SINE MIR 19 195 -67 1228 126 0 0 chr4 44499144 44499334 -157829013 + AluSq SINE Alu 121 310 -3 757 280 69 13 chr4 44499573 44499805 -157828542 - MIR SINE MIR -10 252 8 1749 98 119 7 chr4 44499890 44500167 -157828180 - AluSx SINE Alu -4 308 1 4974 163 23 71 chr4 44500459 44501741 -157826606 - L1MB7 LINE L1 -16 6168 4973 2137 85 3 27 chr4 44502653 44502947 -157825400 + AluSg SINE Alu 3 289 -21 1884 134 17 0 chr4 44502956 44503247 -157825100 + AluSx SINE Alu 1 296 -16 388 230 140 0 chr4 44503790 44503890 -157824457 + L2 LINE L2 3195 3308 -5 295 227 7 39 chr4 44503891 44503903 -157824444 + GA-rich Low_complexity Low_complexity 2 13 -137 1822 177 3 3 chr4 44503903 44504213 -157824134 + AluSx SINE Alu 1 310 -2 295 227 7 39 chr4 44504213 44504354 -157823993 + GA-rich Low_complexity Low_complexity 13 150 0 2321 90 0 0 chr4 44504543 44504844 -157823503 - AluSq SINE Alu -12 301 1 453 279 42 79 chr4 44504877 44504948 -157823399 - L3 LINE CR1 -8 1569 1497 815 187 147 20 chr4 44504948 44505146 -157823201 - MER58A DNA MER1_type 0 224 2 453 279 42 79 chr4 44505146 44505314 -157823033 - L3 LINE CR1 -80 1497 1339 2033 231 72 23 chr4 44505440 44506006 -157822341 + L1MEc LINE L1 37 630 -5766 2115 79 0 39 chr4 44506222 44506527 -157821820 - AluSx SINE Alu -19 293 1 413 330 0 0 chr4 44506540 44506646 -157821701 - L1MEd LINE L1 -5448 671 566 450 0 0 0 chr4 44506997 44507047 -157821300 + (TTTTC)n Simple_repeat Simple_repeat 5 54 0 1882 125 38 3 chr4 44507069 44507357 -157820990 - AluSx SINE Alu -14 298 1 806 145 0 0 chr4 44507532 44507656 -157820691 + AluSg/x SINE Alu 168 291 -19 435 68 0 0 chr4 44507679 44507738 -157820609 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 21 0 0 0 chr4 44508340 44508361 -157819986 + AT_rich Low_complexity Low_complexity 1 21 0 323 311 142 16 chr4 44508368 44508419 -157819928 - MIR SINE MIR -5 257 214 2623 239 37 5 chr4 44508419 44509012 -157819335 + MER90 LTR ERV1 3 614 0 323 311 142 16 chr4 44509012 44509143 -157819204 - MIR SINE MIR -48 214 52 2078 117 3 17 chr4 44509698 44510017 -157818330 - AluSx SINE Alu 0 312 1 22 0 0 0 chr4 44510017 44510039 -157818308 + AT_rich Low_complexity Low_complexity 1 22 0 1988 151 0 7 chr4 44510480 44510779 -157817568 + AluJb SINE Alu 1 297 -15 591 111 11 0 chr4 44510817 44510907 -157817440 + MER53 DNA DNA 99 189 0 29 28 0 0 chr4 44511110 44511146 -157817201 + AT_rich Low_complexity Low_complexity 1 36 0 754 285 45 12 chr4 44511883 44512125 -157816222 + LTR33 LTR ERVL 38 287 -234 2136 125 0 22 chr4 44512127 44512446 -157815901 - AluSx SINE Alu 0 312 1 30 27 0 0 chr4 44512446 44512483 -157815864 + AT_rich Low_complexity Low_complexity 1 37 0 1803 156 11 7 chr4 44512513 44512796 -157815551 + AluJb SINE Alu 3 286 -26 1945 110 20 20 chr4 44513088 44513388 -157814959 + AluSp SINE Alu 14 313 0 254 210 32 0 chr4 44513568 44513630 -157814717 + L1MB7 LINE L1 5945 6008 -176 301 193 0 57 chr4 44513652 44513740 -157814607 - L2 LINE L2 -62 3251 3169 1086 322 163 47 chr4 44514047 44515020 -157813327 - L2 LINE L2 -558 2756 1898 2282 105 10 0 chr4 44515020 44515324 -157813023 + AluSx SINE Alu 1 307 -5 1086 322 163 47 chr4 44515324 44515505 -157812842 - L2 LINE L2 -1416 1898 1740 703 269 33 42 chr4 44515505 44515717 -157812630 - MER63A DNA MER1_type 0 210 1 1086 322 163 47 chr4 44515717 44516171 -157812176 - L2 LINE L2 -1574 1740 959 310 204 41 129 chr4 44516179 44516326 -157812021 - L3 LINE CR1 -393 1184 1051 369 62 0 0 chr4 44518636 44518684 -157809663 + (T)n Simple_repeat Simple_repeat 1 48 0 963 182 0 12 chr4 44518690 44518860 -157809487 - AluJo SINE Alu -144 168 1 410 289 0 26 chr4 44518860 44518974 -157809373 + MIR3 SINE MIR 50 160 -48 340 294 25 10 chr4 44518982 44519148 -157809199 + MIR SINE MIR 34 261 -1 441 74 12 25 chr4 44519532 44519613 -157808734 - AluSp SINE Alu -1 312 233 1832 95 4 0 chr4 44519657 44519889 -157808458 - AluSp SINE Alu -80 233 1 2388 117 11 25 chr4 44520268 44520533 -157807814 - MER47A DNA MER2_type -1957 366 106 2395 86 3 0 chr4 44520533 44520834 -157807513 - AluY SINE Alu -9 302 1 2388 117 11 25 chr4 44520834 44520935 -157807412 - MER47A DNA MER2_type -2217 106 5 1934 135 0 10 chr4 44520990 44521287 -157807060 + AluSx SINE Alu 18 311 -1 332 273 113 54 chr4 44521308 44521935 -157806412 + L1M4 LINE L1 3024 3687 -2459 1084 193 169 49 chr4 44521937 44522263 -157806084 + MLT1A1 LTR MaLR 1 365 0 530 320 49 0 chr4 44522270 44522517 -157805830 + L1M4 LINE L1 3692 3950 -2196 335 196 18 0 chr4 44522544 44522600 -157805747 + Tigger5 DNA MER2_type 2 58 -2265 * 977 109 0 0 chr4 44522598 44522736 -157805611 + Tigger5 DNA MER2_type 2058 2195 -128 1899 138 62 0 chr4 44522798 44523087 -157805260 + AluSq SINE Alu 1 307 -6 627 186 59 0 chr4 44523087 44523205 -157805142 + Tigger5 DNA MER2_type 2199 2323 0 2178 115 0 3 chr4 44523896 44524191 -157804156 + AluSx SINE Alu 1 294 -18 2340 111 0 0 chr4 44524204 44524510 -157803837 + AluSg SINE Alu 2 307 -3 909 100 23 8 chr4 44524516 44524646 -157803701 + AluSq/x SINE Alu 1 132 -181 4533 153 30 24 chr4 44524647 44525515 -157802832 + L1MB2 LINE L1 5299 6171 0 281 315 69 39 chr4 44525541 44525744 -157802603 + L2 LINE L2 2197 2405 -909 267 103 0 0 chr4 44525756 44525795 -157802552 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 4704 138 12 81 chr4 44525871 44526166 -157802181 - L1MB8 LINE L1 0 6178 5864 2309 114 0 0 chr4 44526166 44526472 -157801875 - AluSx SINE Alu -6 306 1 4704 138 12 81 chr4 44526472 44527074 -157801273 - L1MB8 LINE L1 -314 5864 5374 862 196 0 0 chr4 44527074 44527207 -157801140 - FLAM_C SINE Alu 0 133 1 4704 138 12 81 chr4 44527207 44527464 -157800883 - L1MB8 LINE L1 -804 5374 5101 722 152 0 0 chr4 44527467 44527572 -157800775 - FLAM_C SINE Alu -6 137 33 3412 209 23 25 chr4 44527578 44528295 -157800052 - L1MB8 LINE L1 -1047 5099 4383 1885 169 0 7 chr4 44528295 44528603 -157799744 - AluJb SINE Alu -6 306 1 3412 209 23 25 chr4 44528603 44528716 -157799631 - L1MB8 LINE L1 -1763 4383 4271 2292 95 16 0 chr4 44529253 44529557 -157798790 - AluSc SINE Alu 0 309 1 385 286 101 71 chr4 44529667 44529741 -157798606 - L1MEc LINE L1 -4143 2253 2183 1927 163 6 19 chr4 44529741 44530054 -157798293 - AluJb SINE Alu -3 309 1 385 286 101 71 chr4 44530054 44530065 -157798282 - L1MEc LINE L1 -4213 2183 2174 243 0 0 0 chr4 44530065 44530092 -157798255 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 1834 149 7 0 chr4 44530094 44530375 -157797972 - AluSx SINE Alu -29 283 1 385 286 101 71 chr4 44530375 44530621 -157797726 - L1MEc LINE L1 -4222 2174 1908 931 148 32 0 chr4 44530765 44530920 -157797427 - AluY SINE Alu -21 290 131 2235 161 66 2 chr4 44582198 44582607 -157745740 + L1MB7 LINE L1 5721 6155 -29 2823 81 43 28 chr4 44582620 44582991 -157745356 - L1PA14 LINE L1 -3 6158 5779 1925 125 0 78 chr4 44582991 44583326 -157745021 - AluSx SINE Alu -3 309 1 2823 81 43 28 chr4 44583326 44583351 -157744996 - L1PA14 LINE L1 -382 5779 5756 401 176 0 0 chr4 44583606 44583674 -157744673 - MLT1C LTR MaLR -2 503 436 1023 97 15 0 chr4 44583674 44583808 -157744539 + AluSq/x SINE Alu 1 136 -176 705 196 93 55 chr4 44583826 44583880 -157744467 - MLT1C LTR MaLR -51 416 365 2356 96 0 0 chr4 44583880 44584172 -157744175 + AluSx SINE Alu 1 292 -20 705 196 93 55 chr4 44584172 44584478 -157743869 - MLT1C LTR MaLR -102 365 6 525 315 87 8 chr4 44585071 44585312 -157743035 + Charlie8 DNA MER1_type 1 260 -2157 21 0 0 0 chr4 44586095 44586116 -157742231 + AT_rich Low_complexity Low_complexity 1 21 0 1463 141 86 112 chr4 44586299 44586603 -157741744 + AluJb SINE Alu 2 297 -5 304 149 15 15 chr4 44587272 44587339 -157741008 + GA-rich Low_complexity Low_complexity 1 67 0 845 139 0 8 chr4 44587339 44587461 -157740886 - 5S rRNA rRNA 0 121 1 551 157 0 39 chr4 44587462 44587564 -157740783 - L1M3 LINE L1 -347 5824 5727 244 314 121 0 chr4 44587640 44587780 -157740567 - Tigger8 DNA MER2_type -179 487 331 1510 161 15 29 chr4 44588028 44588302 -157740045 + AluJo SINE Alu 17 286 -26 288 264 46 46 chr4 44588325 44588412 -157739935 - L2 LINE L2 -37 3276 3190 214 273 0 0 chr4 44588436 44588480 -157739867 + MER5A DNA MER1_type 30 73 -116 313 98 39 0 chr4 44588497 44588548 -157739799 + MER5A DNA MER1_type 52 104 -85 1619 146 55 29 chr4 44588764 44588883 -157739464 + AluJb SINE Alu 1 116 -192 516 105 0 0 chr4 44588883 44588959 -157739388 + (TG)n Simple_repeat Simple_repeat 2 77 0 1619 146 55 29 chr4 44588959 44589140 -157739207 + AluJb SINE Alu 116 308 0 282 215 25 63 chr4 44589282 44589361 -157738986 - MIR SINE MIR -87 175 100 2438 96 0 0 chr4 44590448 44590760 -157737587 + AluSx SINE Alu 1 312 0 1283 183 36 88 chr4 44591258 44591424 -157736923 - AluJo SINE Alu -22 290 146 1579 181 39 3 chr4 44591424 44591706 -157736641 - AluJb SINE Alu -15 297 6 1283 183 36 88 chr4 44591706 44591845 -157736502 - AluJo SINE Alu -166 146 1 3601 112 6 12 chr4 44592718 44593218 -157735129 + LOR1a LTR ERV1 1 497 0 5099 202 71 9 chr4 44593492 44594580 -157733767 + Charlie1a DNA MER1_type 52 1206 -249 760 154 8 0 chr4 44594574 44594691 -157733656 - Tigger7 DNA MER2_type -2102 385 268 * 499 323 34 78 chr4 44594911 44595205 -157733142 - L2 LINE L2 -6 3266 2986 247 204 37 0 chr4 44595205 44595259 -157733088 - L2 LINE L2 -13 3300 3245 343 196 125 45 chr4 44595454 44595566 -157732781 + MER3 DNA MER1_type 43 163 -46 1528 139 58 19 chr4 44595579 44595889 -157732458 + MER3 DNA MER1_type 2233 2554 0 487 270 172 30 chr4 44595889 44596072 -157732275 - MER20B DNA MER1_type -459 324 109 373 104 15 15 chr4 44596094 44596161 -157732186 + MER3 DNA MER1_type 2549 2615 0 1027 116 7 0 chr4 44596208 44596346 -157732001 + AluSg SINE Alu 1 139 -171 327 104 0 0 chr4 44596673 44596721 -157731626 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 1287 258 73 20 chr4 44597155 44597766 -157730581 - MER20B DNA MER1_type -10 773 83 248 358 47 37 chr4 44597855 44598045 -157730302 + MIR SINE MIR 66 257 -5 1492 174 94 14 chr4 44598046 44598322 -157730025 + AluJo SINE Alu 1 298 -14 196 171 29 0 chr4 44598430 44598465 -157729882 + L2 LINE L2 3265 3300 -13 216 304 63 0 chr4 44598795 44598874 -157729473 + MIR3 SINE MIR 114 197 -11 * 782 231 15 31 chr4 44598872 44599067 -157729280 - MIR SINE MIR -10 252 61 1756 76 0 0 chr4 44599826 44600037 -157728310 + AluSq SINE Alu 1 211 -102 3923 105 0 4 chr4 44600037 44600550 -157727797 + MER9 LTR ERVK 1 511 0 647 148 0 9 chr4 44600550 44600658 -157727689 + AluSq SINE Alu 206 312 -1 181 277 21 0 chr4 44601034 44601081 -157727266 - L2 LINE L2 0 3313 3266 249 340 69 21 chr4 44601660 44601804 -157726543 - L2 LINE L2 -557 2757 2607 2218 132 0 87 chr4 44601911 44602290 -157726057 - MER7A DNA MER2_type -1 345 2 297 0 0 0 chr4 44602805 44602838 -157725509 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 1814 111 0 23 chr4 44602843 44603104 -157725243 - AluSq SINE Alu -36 277 23 364 189 14 0 chr4 44603737 44603811 -157724536 - MER116 DNA Mariner 0 80 6 506 138 85 0 chr4 44603844 44603938 -157724409 - MER58 DNA MER1_type -1 2419 2318 379 253 88 0 chr4 44603950 44604041 -157724306 - MER58 DNA MER1_type -242 99 1 2007 131 0 0 chr4 44604326 44604600 -157723747 - AluJb SINE Alu -12 300 27 2238 76 0 70 chr4 44604600 44604926 -157723421 - AluY SINE Alu -6 305 1 1641 171 4 11 chr4 44605347 44605627 -157722720 - AluJo SINE Alu -34 278 1 420 237 112 20 chr4 44606428 44606580 -157721767 + MIR SINE MIR 96 261 -1 231 314 92 72 chr4 44606644 44606851 -157721496 - L2 LINE L2 -18 3254 3044 552 101 0 0 chr4 44608168 44608247 -157720100 + HERV9 LTR ERV1 4866 4944 -3455 2098 151 104 126 chr4 44608248 44609148 -157719199 + HERV9 LTR ERV1 840 1720 -5176 * 4636 94 13 2 chr4 44609143 44609779 -157718568 + HERV9 LTR ERV1 7757 8399 0 6017 78 71 20 chr4 44609779 44610565 -157717782 + LTR12 LTR ERV1 1 826 0 771 184 20 14 chr4 44610438 44610585 -157717762 + LTR12 LTR ERV1 452 599 -115 636 235 16 71 chr4 44610595 44610778 -157717569 - MER5B DNA MER1_type -5 173 1 281 244 11 44 chr4 44611073 44611163 -157717184 + L2 LINE L2 3223 3309 -4 259 116 0 0 chr4 44611807 44611850 -157716497 - L1MB7 LINE L1 0 6184 6142 5509 183 11 3 chr4 44611850 44612885 -157715462 + L1P LINE L1 4228 5270 -876 604 263 19 44 chr4 44612899 44613104 -157715243 + LTR4 LTR ERV1 1 200 -396 256 224 41 0 chr4 44613161 44613210 -157715137 + LTR4 LTR ERV1 307 357 -239 942 209 20 65 chr4 44613296 44613588 -157714759 + LTR4 LTR ERV1 317 595 -1 1283 71 142 27 chr4 44613589 44613814 -157714533 + L1P4 LINE L1 5268 5518 -643 1918 130 7 7 chr4 44613976 44614268 -157714079 - AluSc SINE Alu -17 292 1 2085 116 0 7 chr4 44615326 44615646 -157712701 - AluSx SINE Alu 0 318 1 1192 171 198 53 chr4 44615946 44616320 -157712027 + MSTC LTR MaLR 1 428 0 258 331 35 125 chr4 44616627 44616914 -157711433 - L2 LINE L2 0 3272 3012 181 250 0 0 chr4 44617053 44617089 -157711258 + MIR SINE MIR 39 74 -134 610 244 187 14 chr4 44617521 44617730 -157710617 - MIR SINE MIR 0 262 18 209 152 0 43 chr4 44618701 44618747 -157709600 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 458 233 90 63 chr4 44618920 44619143 -157709204 - MARNA DNA Mariner -343 243 15 340 264 95 27 chr4 44619525 44619673 -157708674 + L1MC4a LINE L1 5731 5888 -1920 553 213 90 13 chr4 44619732 44619887 -157708460 - L1MC5 LINE L1 -51 7910 7744 40 37 0 0 chr4 44620004 44620058 -157708289 + AT_rich Low_complexity Low_complexity 1 54 0 1835 108 4 16 chr4 44620058 44620316 -157708031 - AluSg SINE Alu -12 298 44 1939 132 7 3 chr4 44620318 44620606 -157707741 - AluSx SINE Alu -18 294 6 1513 144 76 47 chr4 44620755 44621032 -157707315 - AluJo SINE Alu -24 288 4 23 33 0 0 chr4 44624799 44624829 -157703518 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 44625200 44625228 -157703119 + AT_rich Low_complexity Low_complexity 1 28 0 2290 71 41 0 chr4 44625260 44625554 -157702793 + AluSp SINE Alu 1 306 -7 2156 177 18 13 chr4 44625672 44626057 -157702290 + LOR1b LTR ERV1 75 461 0 289 196 54 0 chr4 44626059 44626115 -157702232 - L1M4 LINE L1 -519 5665 5607 375 23 0 0 chr4 44626161 44626205 -157702142 + (TA)n Simple_repeat Simple_repeat 1 44 0 1013 175 22 0 chr4 44626205 44626388 -157701959 - L1M4 LINE L1 -579 5599 5413 265 250 138 0 chr4 44626479 44626559 -157701788 - L2 LINE L2 -2 3311 3221 457 223 11 0 chr4 44626929 44627023 -157701324 - L2 LINE L2 0 3313 3219 895 287 151 31 chr4 44627070 44627495 -157700852 + MLT1K LTR MaLR 1 476 0 652 125 0 0 chr4 44628410 44628514 -157699833 + L1MA8 LINE L1 6186 6289 -2 2263 102 0 0 chr4 44628674 44628968 -157699379 + AluY SINE Alu 1 294 -17 1059 165 41 18 chr4 44629193 44629363 -157698984 - FAM SINE Alu -1 174 1 296 276 117 37 chr4 44629462 44629625 -157698722 - MARNA DNA Mariner -286 300 125 180 241 37 0 chr4 44629652 44629706 -157698641 - L2 LINE L2 -225 3047 2992 2214 117 0 0 chr4 44629742 44630059 -157698288 + AluSx SINE Alu 1 317 0 2714 26 3 0 chr4 44631574 44631882 -157696465 - AluY SINE Alu -2 309 1 342 0 0 0 chr4 44632384 44632422 -157695925 + (CA)n Simple_repeat Simple_repeat 1 38 0 722 306 115 21 chr4 44632570 44633099 -157695248 + L1MC4a LINE L1 5254 5832 -1976 2264 112 0 0 chr4 44633128 44633424 -157694923 - AluSx SINE Alu -16 296 1 525 233 267 0 chr4 44633736 44633946 -157694401 + L1ME3A LINE L1 5904 6169 -1 1331 126 36 22 chr4 44634467 44634689 -157693658 - MER2 DNA MER2_type 0 345 121 709 190 92 7 chr4 44634691 44634833 -157693514 + AluJo SINE Alu 4 157 -155 749 154 7 44 chr4 44634933 44635069 -157693278 + FRAM SINE Alu 43 173 -3 490 184 156 7 chr4 44635899 44636040 -157692307 - L1ME3A LINE L1 -5 6165 6004 487 355 47 41 chr4 44636113 44636431 -157691916 - L2 LINE L2 -5 3267 2948 266 292 242 8 chr4 44636492 44636732 -157691615 - L2 LINE L2 -469 2845 2550 2315 90 3 7 chr4 44636888 44637187 -157691160 + AluSp SINE Alu 10 307 -6 298 301 0 21 chr4 44637477 44637570 -157690777 - L2 LINE L2 -1366 1948 1858 1390 127 122 21 chr4 44637830 44638067 -157690280 - Tigger7 DNA MER2_type 0 2491 2231 2464 85 0 0 chr4 44638540 44638845 -157689502 - AluSc SINE Alu -4 305 1 180 305 189 37 chr4 44640431 44640621 -157687726 + L2 LINE L2 3080 3298 -15 254 250 42 0 chr4 44640628 44640700 -157687647 - MIR SINE MIR -8 254 180 333 0 0 0 chr4 44640799 44640836 -157687511 + (CA)n Simple_repeat Simple_repeat 2 38 0 1770 127 20 38 chr4 44641806 44642098 -157686249 + AluJo SINE Alu 5 291 -21 2023 143 10 0 chr4 44642364 44642658 -157685689 - AluSq SINE Alu -16 297 1 26 30 0 0 chr4 44643562 44643595 -157684752 + AT_rich Low_complexity Low_complexity 1 33 0 233 255 122 20 chr4 44644062 44644160 -157684187 + MIR3 SINE MIR 78 185 -23 1683 205 106 133 chr4 44644347 44645009 -157683338 + MLT1E1 LTR MaLR 11 654 0 2073 128 0 3 chr4 44645071 44645369 -157682978 - AluSx SINE Alu -15 297 1 429 294 51 34 chr4 44645925 44646102 -157682245 + MER5A DNA MER1_type 7 186 -3 190 379 105 0 chr4 44646109 44646204 -157682143 - MIR3 SINE MIR -48 160 56 1650 107 94 4 chr4 44646204 44646437 -157681910 + AluSc SINE Alu 37 290 -19 433 222 62 0 chr4 44646868 44646949 -157681398 + AluJ/FLAM SINE Alu 2 87 -225 2284 119 3 0 chr4 44646949 44647260 -157681087 + AluSq SINE Alu 1 312 -1 1100 123 0 6 chr4 44647260 44647439 -157680908 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 507 45 0 0 chr4 44647443 44647509 -157680838 + (GAAA)n Simple_repeat Simple_repeat 2 67 0 1515 130 18 80 chr4 44647570 44647846 -157680501 + AluJb SINE Alu 39 297 -15 809 240 138 22 chr4 44648097 44648322 -157680025 - MIR SINE MIR -6 256 6 1857 155 3 0 chr4 44648626 44648916 -157679431 - AluSx SINE Alu -16 296 6 21 0 0 0 chr4 44649775 44649796 -157678551 + AT_rich Low_complexity Low_complexity 1 21 0 1850 151 28 0 chr4 44649974 44650258 -157678089 - AluJb SINE Alu -20 292 1 27 73 0 0 chr4 44650341 44650396 -157677951 + AT_rich Low_complexity Low_complexity 1 55 0 203 359 75 0 chr4 44652864 44652970 -157675377 + L3 LINE CR1 1458 1571 -6 180 333 119 0 chr4 44653028 44653112 -157675235 + MIR SINE MIR 104 197 -65 334 159 0 16 chr4 44653397 44653460 -157674887 + AluS SINE Alu 1 62 -241 2218 104 7 3 chr4 44654137 44654436 -157673911 - AluSc SINE Alu -9 300 1 595 245 187 98 chr4 44654560 44655037 -157673310 + MLT1H LTR MaLR 21 539 -10 596 227 81 10 chr4 44655355 44655553 -157672794 + L1ME4a LINE L1 5704 5915 -206 1643 211 142 56 chr4 44655933 44656624 -157671723 - L1MC5 LINE L1 -435 7526 6777 573 311 90 43 chr4 44656629 44657183 -157671164 - HAL1b LINE L1 -708 640 61 2432 79 3 0 chr4 44657434 44657738 -157670609 - AluY SINE Alu -5 306 2 352 246 205 33 chr4 44657876 44657998 -157670349 + L2 LINE L2 3152 3294 -19 292 279 52 26 chr4 44658004 44658158 -157670189 + L1ME4a LINE L1 5963 6120 -1 420 352 61 12 chr4 44659624 44659871 -157668476 - MIR SINE MIR -3 259 1 1027 169 47 59 chr4 44660294 44660530 -157667817 + MER46A DNA MER2_type 4 236 0 494 290 68 12 chr4 44660552 44660714 -157667633 - MIR SINE MIR -28 234 64 6432 73 27 48 chr4 44660787 44662281 -157666066 + SVA Other Other 3 1386 0 283 255 21 32 chr4 44662458 44662552 -157665795 - MIR SINE MIR -55 207 115 255 172 17 52 chr4 44662839 44662897 -157665450 + GA-rich Low_complexity Low_complexity 5 60 0 185 282 0 70 chr4 44663584 44663655 -157664692 + L2 LINE L2 3009 3074 -198 723 323 47 0 chr4 44663946 44664178 -157664169 + MIR SINE MIR 18 260 -2 781 173 0 15 chr4 44664233 44664355 -157663992 + FLAM_C SINE Alu 2 123 -189 324 0 0 0 chr4 44664355 44664391 -157663956 + (CATA)n Simple_repeat Simple_repeat 2 37 0 2138 108 20 3 chr4 44664905 44665211 -157663136 - AluSx SINE Alu -1 311 1 516 232 128 97 chr4 44666143 44666658 -157661689 - MLT1L LTR MaLR -19 492 7 537 310 132 31 chr4 44666997 44667576 -157660771 + L2 LINE L2 2622 3264 -49 798 224 101 32 chr4 44667813 44668032 -157660315 + MIR SINE MIR 14 247 -15 2031 85 52 4 chr4 44668057 44668378 -157659969 + AluSq SINE Alu 1 334 0 1904 92 0 0 chr4 44668609 44668849 -157659498 + AluSq SINE Alu 59 298 -15 328 91 0 0 chr4 44670319 44670363 -157657984 - Alu SINE Alu -258 44 1 21 57 0 0 chr4 44671062 44671097 -157657250 + AT_rich Low_complexity Low_complexity 1 35 0 2293 89 0 26 chr4 44671159 44671472 -157656875 + AluSx SINE Alu 1 305 -7 199 316 137 34 chr4 44672613 44672730 -157655617 + MIR SINE MIR 63 191 -71 1397 162 3 114 chr4 44673567 44673900 -157654447 + AluJo SINE Alu 1 296 -16 1713 63 0 0 chr4 44674372 44674577 -157653770 - AluY SINE Alu -14 297 93 1412 183 60 7 chr4 44674627 44674911 -157653436 + AluJb SINE Alu 1 299 -13 26 30 0 0 chr4 44675042 44675075 -157653272 + AT_rich Low_complexity Low_complexity 1 33 0 2391 280 168 57 chr4 44676027 44676769 -157651578 + HAL1 LINE L1 307 965 -1542 1485 181 3 35 chr4 44676769 44677051 -157651296 - AluJo SINE Alu -17 295 23 2391 280 168 57 chr4 44677051 44678191 -157650156 + HAL1 LINE L1 965 2398 -109 676 273 76 98 chr4 44678694 44679233 -157649114 + LTR67 LTR ERVL 31 557 0 2420 84 0 0 chr4 44679428 44679725 -157648622 - AluSc SINE Alu -12 297 1 1419 109 0 0 chr4 44680577 44680769 -157647578 - AluSq SINE Alu -8 305 114 583 85 110 0 chr4 44680806 44680888 -157647459 - AluSq SINE Alu -179 134 44 264 100 0 0 chr4 44681137 44681177 -157647170 + (TG)n Simple_repeat Simple_repeat 2 41 0 689 176 0 25 chr4 44682443 44682562 -157645785 - FRAM SINE Alu -6 170 55 314 238 67 30 chr4 44682612 44682752 -157645595 + L1ME LINE L1 5677 5822 -299 2030 112 0 11 chr4 44682760 44683046 -157645301 + AluY SINE Alu 1 283 -28 2391 91 3 0 chr4 44683288 44683595 -157644752 + AluSc SINE Alu 1 308 -1 271 209 60 0 chr4 44683687 44683754 -157644593 - HsTC2 DNA Tc2 -3 1895 1825 433 243 9 9 chr4 44683799 44683906 -157644441 - MER104 DNA Tc2 -72 108 2 2244 123 3 0 chr4 44684023 44684332 -157644015 + AluSp SINE Alu 1 310 -3 832 123 0 0 chr4 44684488 44684594 -157643753 + U6 snRNA snRNA 2 107 0 283 191 58 14 chr4 44684594 44684680 -157643667 + L1MA9 LINE L1 6213 6291 0 2408 93 0 3 chr4 44684849 44685150 -157643197 + AluY SINE Alu 1 300 -11 4587 199 44 11 chr4 44685737 44686801 -157641546 + L1 LINE L1 3148 4251 -1895 198 0 0 0 chr4 44686801 44686823 -157641524 + (CA)n Simple_repeat Simple_repeat 1 22 0 4587 199 44 11 chr4 44686823 44686857 -157641490 + L1 LINE L1 4251 4282 -1864 944 206 0 0 chr4 44686868 44687033 -157641314 + FRAM SINE Alu 1 165 -11 485 270 103 0 chr4 44687047 44687173 -157641174 + L1 LINE L1 4497 4635 -1511 1782 174 7 3 chr4 44687305 44687603 -157640744 - AluSx SINE Alu -13 299 1 359 293 72 44 chr4 44687928 44688109 -157640238 - MIR3 SINE MIR -2 206 21 1368 145 30 34 chr4 44689090 44689325 -157639022 - MER46A DNA MER2_type -1 235 2 230 307 148 0 chr4 44689487 44689575 -157638772 - MIR SINE MIR -108 154 54 607 240 16 0 chr4 44690516 44690645 -157637702 + MER94 DNA DNA 1 131 -3 351 300 0 10 chr4 44691455 44691555 -157636792 + L2 LINE L2 3174 3272 0 244 242 0 45 chr4 44691750 44691816 -157636531 + MIR SINE MIR 85 147 -115 1859 264 124 25 chr4 44691925 44692036 -157636311 + L1MC4 LINE L1 6905 7004 -1038 1861 177 0 3 chr4 44692036 44692330 -157636017 + AluSx SINE Alu 1 293 -19 1859 264 124 25 chr4 44692330 44693122 -157635225 + L1MC4 LINE L1 7004 7897 -145 797 179 19 56 chr4 44694133 44694295 -157634052 + FRAM SINE Alu 6 161 -15 1298 81 0 0 chr4 44694304 44694465 -157633882 - AluSc SINE Alu -17 292 132 2351 99 0 6 chr4 44694465 44694777 -157633570 - AluY SINE Alu -1 310 1 241 293 49 0 chr4 44694809 44694891 -157633456 - MIR SINE MIR -105 157 72 208 174 87 22 chr4 44695217 44695263 -157633084 + L2 LINE L2 3219 3267 -5 2254 107 0 3 chr4 44695330 44695628 -157632719 + AluSg SINE Alu 1 297 -13 3631 143 8 9 chr4 44695780 44696306 -157632041 - MER1A DNA MER1_type 0 527 3 542 198 0 0 chr4 44696362 44696458 -157631889 - MER5A DNA MER1_type -83 106 11 2291 90 3 0 chr4 44697715 44698005 -157630342 + AluSg SINE Alu 1 291 -19 304 75 0 0 chr4 44698408 44698448 -157629899 - L1P LINE L1 -1916 4230 4191 957 98 0 15 chr4 44698455 44698588 -157629759 + L1P LINE L1 4103 4233 -1913 284 271 13 33 chr4 44698661 44698812 -157629535 + L1MC5 LINE L1 7607 7754 -207 2160 91 3 52 chr4 44698814 44698949 -157629398 + AluSq SINE Alu 1 141 -172 786 96 29 0 chr4 44698949 44699053 -157629294 + U6 snRNA snRNA 1 107 0 13036 80 14 2 chr4 44699056 44701481 -157626866 + L1PA7 LINE L1 3715 6151 -3 2160 91 3 52 chr4 44701481 44701650 -157626697 + AluSq SINE Alu 143 294 -19 230 376 8 36 chr4 44701894 44702141 -157626206 + L2 LINE L2 2872 3111 -161 522 295 44 57 chr4 44702184 44702275 -157626072 - MIR SINE MIR -11 251 160 2388 91 0 0 chr4 44702275 44702598 -157625749 - AluSg SINE Alu 0 323 1 522 295 44 57 chr4 44702598 44702732 -157625615 - MIR SINE MIR -102 160 28 226 296 45 11 chr4 44702819 44702907 -157625440 - L2 LINE L2 -9 3263 3173 1583 168 16 29 chr4 44702932 44703248 -157625099 + AluJb SINE Alu 1 312 0 269 238 24 103 chr4 44703339 44703465 -157624882 + MIR SINE MIR 74 189 -73 594 179 140 39 chr4 44703700 44703865 -157624482 + L1MC2 LINE L1 6143 6329 -15 1661 168 11 3 chr4 44703865 44704150 -157624197 + AluJb SINE Alu 1 287 -25 594 179 140 39 chr4 44704150 44704163 -157624184 + L1MC2 LINE L1 6329 6339 -5 249 265 0 29 chr4 44704182 44704250 -157624097 - MARNA DNA Mariner -363 223 158 180 0 0 0 chr4 44704531 44704551 -157623796 + (A)n Simple_repeat Simple_repeat 1 20 0 221 261 62 93 chr4 44704993 44705154 -157623193 - MIR SINE MIR -73 189 34 258 298 106 0 chr4 44706585 44706689 -157621658 + LTR33 LTR ERVL 25 139 -382 287 239 46 39 chr4 44706726 44706856 -157621491 + LTR33 LTR ERVL 303 433 -88 378 61 0 0 chr4 44706902 44706951 -157621396 + (TG)n Simple_repeat Simple_repeat 2 50 0 1555 169 14 11 chr4 44706952 44707231 -157621116 - AluJb SINE Alu -29 283 4 23 33 0 0 chr4 44707346 44707376 -157620971 + AT_rich Low_complexity Low_complexity 1 30 0 201 336 32 24 chr4 44707385 44707510 -157620837 + L2 LINE L2 2633 2758 -556 480 284 131 36 chr4 44707749 44708306 -157620041 + L2 LINE L2 2690 3313 0 2062 110 39 0 chr4 44708558 44708840 -157619507 + AluSx SINE Alu 1 293 -19 192 40 0 0 chr4 44708844 44708869 -157619478 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 398 214 34 11 chr4 44708919 44709008 -157619339 - MER58B DNA MER1_type -19 322 232 1029 188 9 65 chr4 44709096 44709216 -157619131 - MER58B DNA MER1_type -2204 216 113 2164 51 44 14 chr4 44709216 44709518 -157618829 - AluY SINE Alu 0 310 1 1029 188 9 65 chr4 44709518 44709625 -157618722 - MER58B DNA MER1_type -2307 113 1 1801 148 3 14 chr4 44711106 44711389 -157616958 + AluJo SINE Alu 1 280 -32 2011 113 63 121 chr4 44711591 44712005 -157616342 - MLT1B LTR MaLR 0 390 1 688 165 0 8 chr4 44712581 44712707 -157615640 + L1 LINE L1 5207 5331 -815 776 93 0 0 chr4 44712707 44712804 -157615543 + AluS SINE Alu 2 97 -216 2194 133 0 0 chr4 44712806 44713115 -157615232 + AluSx SINE Alu 1 309 -3 2056 115 19 0 chr4 44713115 44713436 -157614911 + L1P4 LINE L1 5332 5658 -508 542 248 39 0 chr4 44713616 44713745 -157614602 - L2 LINE L2 0 3313 3180 340 299 49 60 chr4 44714062 44714246 -157614101 + L2 LINE L2 3072 3253 -19 887 254 42 121 chr4 44714684 44715165 -157613182 - L2 LINE L2 0 3313 2871 761 246 84 24 chr4 44715377 44715674 -157612673 + L2 LINE L2 2565 2879 -435 449 247 84 13 chr4 44716063 44716309 -157612038 + Charlie8 DNA MER1_type 53 1417 -1000 202 211 0 0 chr4 44716456 44716494 -157611853 + (CATA)n Simple_repeat Simple_repeat 3 40 0 2242 106 0 0 chr4 44716766 44717095 -157611252 + AluSx SINE Alu 1 312 0 1062 185 13 53 chr4 44718983 44719210 -157609137 - AluJo SINE Alu -10 302 85 250 242 0 45 chr4 44719398 44719464 -157608883 + MIR SINE MIR 85 147 -115 1811 84 0 0 chr4 44720004 44720229 -157608118 + AluSg/x SINE Alu 73 297 -13 2332 90 3 3 chr4 44721095 44721394 -157606953 + AluSp SINE Alu 1 299 -14 207 191 0 191 chr4 44721394 44721488 -157606859 - MIR SINE MIR -181 81 6 679 106 8 8 chr4 44721532 44721655 -157606692 + L1MA8 LINE L1 6169 6291 0 2167 118 0 0 chr4 44722099 44722388 -157605959 - AluSx SINE Alu -23 289 1 657 326 25 0 chr4 44722604 44722843 -157605504 + MIR SINE MIR 3 247 -15 241 291 25 0 chr4 44722939 44723018 -157605329 - MIR SINE MIR -107 155 75 481 311 62 6 chr4 44723122 44723283 -157605064 - MER91A DNA MER1_type -26 170 1 360 371 80 17 chr4 44723283 44723707 -157604640 + L2 LINE L2 2634 3084 -188 199 191 0 85 chr4 44724427 44724474 -157603873 + MIR SINE MIR 210 252 -10 * 243 217 0 0 chr4 44724443 44724489 -157603858 + L2 LINE L2 3267 3312 -1 1620 168 20 14 chr4 44725715 44726007 -157602340 - AluJo SINE Alu -18 294 1 182 152 0 22 chr4 44726688 44726734 -157601613 + (TG)n Simple_repeat Simple_repeat 2 46 0 2065 94 0 8 chr4 44726753 44727019 -157601328 - AluSp SINE Alu -14 299 36 26 19 0 58 chr4 44727080 44727132 -157601215 + AT_rich Low_complexity Low_complexity 1 49 0 2936 9 0 0 chr4 44728706 44729024 -157599323 + AluYb8 SINE Alu 1 318 0 2442 87 0 3 chr4 44729201 44729512 -157598835 + AluSg SINE Alu 1 310 0 204 250 31 16 chr4 44729828 44729892 -157598455 - MIR SINE MIR -8 254 190 2895 129 2 32 chr4 44732000 44732473 -157595874 - L1PA15 LINE L1 0 6165 5707 1121 246 35 3 chr4 44733189 44733477 -157594870 - AluJo SINE Alu -4 298 2 216 0 0 0 chr4 44733608 44733632 -157594715 + (T)n Simple_repeat Simple_repeat 1 24 0 575 223 294 5 chr4 44733769 44733966 -157594381 + MIR SINE MIR 9 262 0 254 269 82 45 chr4 44734176 44734310 -157594037 - MIR3 SINE MIR -38 170 32 981 133 0 0 chr4 44734765 44734923 -157593424 + (TTC)n Simple_repeat Simple_repeat 2 159 0 385 291 69 21 chr4 44735196 44735361 -157592986 + MIR SINE MIR 19 178 -57 237 159 0 0 chr4 44735541 44735585 -157592762 + GA-rich Low_complexity Low_complexity 2 45 0 263 261 269 0 chr4 44735917 44736036 -157592311 + MIR SINE MIR 106 256 -6 229 269 209 15 chr4 44736220 44736354 -157591993 - MER5A DNA MER1_type 0 189 30 211 291 228 8 chr4 44736243 44736370 -157591977 + MER5A DNA MER1_type 35 189 0 * 517 204 242 13 chr4 44736551 44736708 -157591639 - MIR SINE MIR -50 212 20 2237 94 7 3 chr4 44736806 44737092 -157591255 - AluSx SINE Alu -25 287 1 448 281 57 64 chr4 44737627 44737719 -157590628 - MIR SINE MIR -23 239 148 2170 115 3 3 chr4 44737719 44738015 -157590332 - AluSx SINE Alu -12 300 5 448 281 57 64 chr4 44738015 44738129 -157590218 - MIR SINE MIR -114 148 37 185 300 0 0 chr4 44738943 44738993 -157589354 - L2 LINE L2 -8 3264 3215 318 299 79 16 chr4 44739311 44739438 -157588909 + MER5A DNA MER1_type 1 135 -54 252 0 0 0 chr4 44739533 44739561 -157588786 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 712 226 6 18 chr4 44740067 44740231 -157588116 - MER4D LTR ERV1 -7 896 735 21 36 0 0 chr4 44740954 44740982 -157587365 + AT_rich Low_complexity Low_complexity 1 28 0 188 363 25 25 chr4 44741273 44741433 -157586914 - L2 LINE L2 -801 2513 2354 995 197 87 9 chr4 44741668 44741886 -157586461 + MER46A DNA MER2_type 1 235 -1 621 285 74 44 chr4 44741978 44742175 -157586172 + L1MEc LINE L1 647 837 -5368 2437 70 0 19 chr4 44742175 44742489 -157585858 + AluY SINE Alu 1 308 -3 621 285 74 44 chr4 44742489 44742792 -157585555 + L1MEc LINE L1 837 1162 -5043 331 291 77 13 chr4 44743073 44743360 -157584987 + L1MEc LINE L1 1512 1812 -937 714 167 73 27 chr4 44743363 44743513 -157584834 - MER3 DNA MER1_type -52 157 1 1788 143 11 0 chr4 44743795 44744068 -157584279 + AluSx SINE Alu 31 306 -6 251 323 91 0 chr4 44744208 44744307 -157584040 - L2 LINE L2 -222 3050 2943 262 173 76 19 chr4 44744667 44744738 -157583609 + MER5B DNA MER1_type 1 80 -109 2457 121 3 24 chr4 44744763 44745135 -157583212 - THE1B LTR MaLR 0 364 1 31 0 0 0 chr4 44745411 44745442 -157582905 + AT_rich Low_complexity Low_complexity 1 31 0 30 27 0 0 chr4 44745498 44745535 -157582812 + AT_rich Low_complexity Low_complexity 1 37 0 348 304 78 17 chr4 44745927 44746042 -157582305 + L2 LINE L2 3190 3311 -2 277 272 105 9 chr4 44746204 44746318 -157582029 + L2 LINE L2 3185 3309 -4 278 271 112 19 chr4 44746368 44746475 -157581872 - MIR SINE MIR -87 175 59 22 0 0 0 chr4 44746810 44746832 -157581515 + AT_rich Low_complexity Low_complexity 1 22 0 1864 102 11 8 chr4 44747057 44747321 -157581026 + AluSq SINE Alu 44 308 -5 1031 202 14 22 chr4 44748286 44748509 -157579838 - AluJb SINE Alu -7 305 85 1431 203 61 81 chr4 44749087 44749257 -157579090 + MLT1C LTR MaLR 5 177 -290 2323 102 0 7 chr4 44749257 44749561 -157578786 + AluSg SINE Alu 1 302 -8 1431 203 61 81 chr4 44749561 44749862 -157578485 + MLT1C LTR MaLR 177 467 0 300 355 7 0 chr4 44749926 44750067 -157578280 - LTR33 LTR ERVL -81 440 299 435 257 60 19 chr4 44750119 44750318 -157578029 - LTR33 LTR ERVL -330 193 1 1217 167 5 51 chr4 44750605 44750674 -157577673 - AluJo SINE Alu -106 206 135 1981 146 7 0 chr4 44750674 44750969 -157577378 - AluSx SINE Alu -5 307 11 1217 167 5 51 chr4 44750969 44751114 -157577233 - AluJo SINE Alu -177 135 2 260 252 108 45 chr4 44751608 44751719 -157576628 + MIR3 SINE MIR 2 119 -89 1692 197 0 9 chr4 44751871 44752186 -157576161 - AluJb SINE Alu 0 312 1 286 240 251 17 chr4 44752533 44752712 -157575635 - L1ME4a LINE L1 -22 6099 5879 254 172 16 47 chr4 44754221 44754285 -157574062 + CT-rich Low_complexity Low_complexity 2 63 0 412 288 86 58 chr4 44754899 44755056 -157573291 + MLT1K LTR MaLR 10 161 -427 2116 132 42 31 chr4 44755056 44755412 -157572935 + THE1B LTR MaLR 1 360 -4 412 288 86 58 chr4 44755412 44755597 -157572750 + MLT1K LTR MaLR 161 432 -156 300 200 0 0 chr4 44755630 44755700 -157572647 + (CA)n Simple_repeat Simple_repeat 1 70 0 3170 148 6 11 chr4 44755899 44756425 -157571922 - MER1A DNA MER1_type 0 529 7 2875 155 63 15 chr4 44756972 44757586 -157570761 - L1MC2 LINE L1 -53 6291 5648 760 215 40 4 chr4 44757579 44757807 -157570540 - L1M4 LINE L1 -2090 4056 3821 * 1066 232 49 42 chr4 44757805 44758257 -157570090 - L1M4 LINE L1 -1543 4603 4149 614 164 216 0 chr4 44758411 44758582 -157569765 - L1MC2 LINE L1 -763 5383 5176 793 225 56 123 chr4 44758660 44758825 -157569522 - L1MC2 LINE L1 -949 5197 5023 1624 138 16 0 chr4 44758825 44759072 -157569275 - AluY SINE Alu -14 297 47 793 225 56 123 chr4 44759072 44759369 -157568978 - L1MC2 LINE L1 -1123 5023 4766 781 154 0 31 chr4 44761036 44761166 -157567181 + FLAM_A SINE Alu 2 127 -6 198 0 0 0 chr4 44761813 44761835 -157566512 + (T)n Simple_repeat Simple_repeat 1 22 0 261 317 141 28 chr4 44762297 44762439 -157565908 - MIR SINE MIR -71 191 34 261 139 0 0 chr4 44762793 44762836 -157565511 + (TCCC)n Simple_repeat Simple_repeat 2 44 0 2101 113 10 16 chr4 44762843 44763154 -157565193 - AluSc SINE Alu 0 309 1 213 222 60 120 chr4 44763362 44763382 -157564965 - MER5A DNA MER1_type -22 167 147 2294 74 14 3 chr4 44763382 44763678 -157564669 - AluY SINE Alu -12 299 1 289 264 144 0 chr4 44763678 44763803 -157564544 + MER5A DNA MER1_type 44 186 -3 22 35 0 0 chr4 44763940 44763969 -157564378 + AT_rich Low_complexity Low_complexity 1 29 0 2030 130 3 40 chr4 44763999 44764323 -157564024 + AluJo SINE Alu 1 312 0 701 264 50 10 chr4 44764446 44764647 -157563700 + MIR SINE MIR 53 261 -1 1468 160 36 59 chr4 44765212 44765519 -157562828 + AluJo SINE Alu 6 305 -7 1773 168 84 0 chr4 44766869 44767190 -157561157 - MER46B DNA MER2_type -13 223 1 213 290 224 0 chr4 44768023 44768130 -157560217 + MIR SINE MIR 56 186 -76 303 252 54 9 chr4 44768144 44768255 -157560092 - MER21B LTR ERV1 -113 750 635 3404 108 47 97 chr4 44768296 44768728 -157559619 + LTR36 LTR ERV1 1 453 -158 2516 21 0 4 chr4 44768728 44769008 -157559339 - AluY SINE Alu -11 300 22 3404 108 47 97 chr4 44769008 44769109 -157559238 + LTR36 LTR ERV1 453 558 -53 1682 126 11 121 chr4 44769109 44769457 -157558890 + AluJo SINE Alu 1 310 -2 1847 118 0 33 chr4 44769461 44769731 -157558616 + AluSx SINE Alu 1 261 -51 3404 108 47 97 chr4 44769731 44769829 -157558518 + LTR36 LTR ERV1 561 606 -5 1860 236 97 32 chr4 44769829 44770388 -157557959 - MER21B LTR ERV1 -256 607 13 255 179 90 26 chr4 44770686 44770764 -157557583 + MLT1K LTR MaLR 330 412 -176 303 152 18 161 chr4 44770779 44770844 -157557503 + MER5C DNA MER1_type 58 102 -222 2350 62 3 53 chr4 44770844 44771167 -157557180 + AluY SINE Alu 1 307 -4 303 152 18 161 chr4 44771167 44771213 -157557134 + MER5C DNA MER1_type 102 153 -171 23 0 0 0 chr4 44771213 44771236 -157557111 + AT_rich Low_complexity Low_complexity 1 23 0 588 229 239 5 chr4 44771561 44771766 -157556581 - MIR SINE MIR 0 262 10 276 374 113 22 chr4 44771848 44772070 -157556277 + L2 LINE L2 2985 3226 -46 738 256 62 20 chr4 44772129 44772324 -157556023 - MIR SINE MIR -26 236 34 255 343 10 10 chr4 44772454 44772556 -157555791 + L2 LINE L2 3163 3264 -8 804 230 43 0 chr4 44772614 44772801 -157555546 - MIR SINE MIR -37 225 31 953 246 72 11 chr4 44772806 44773070 -157555277 - MLT1C LTR MaLR 0 467 188 254 175 70 18 chr4 44773075 44773132 -157555215 - MLT1C LTR MaLR -243 224 165 779 180 49 33 chr4 44773169 44773352 -157554995 - MLT1C LTR MaLR -281 186 1 23 0 0 0 chr4 44774543 44774566 -157553781 + AT_rich Low_complexity Low_complexity 1 23 0 407 282 88 17 chr4 44775124 44775305 -157553042 + MIR SINE MIR 68 261 -1 390 195 189 77 chr4 44775935 44776066 -157552281 + MIR SINE MIR 46 202 -60 1724 132 4 0 chr4 44776066 44776301 -157552046 - MER46A DNA MER2_type 0 236 1 390 195 189 77 chr4 44776301 44776338 -157552009 + MIR SINE MIR 202 233 -29 486 275 53 0 chr4 44776772 44776903 -157551444 + L2 LINE L2 3134 3271 -1 317 305 136 8 chr4 44777028 44777146 -157551201 - MIR3 SINE MIR -72 136 4 1547 162 3 65 chr4 44778625 44778743 -157549604 + AluJo SINE Alu 1 125 -187 183 42 0 0 chr4 44778743 44778767 -157549580 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1547 162 3 65 chr4 44778767 44778969 -157549378 + AluJo SINE Alu 125 301 -11 2368 81 16 3 chr4 44779966 44780275 -157548072 + AluSp SINE Alu 1 313 0 193 209 23 0 chr4 44780472 44780515 -157547832 + L2 LINE L2 1784 1827 -1487 509 106 0 0 chr4 44780634 44780700 -157547647 - AluSq SINE Alu -114 199 134 449 203 70 42 chr4 44780718 44780861 -157547486 + MER5C DNA MER1_type 172 318 -6 377 307 7 21 chr4 44781044 44781099 -157547248 + GA-rich Low_complexity Low_complexity 4 58 -83 2395 96 0 0 chr4 44781099 44781400 -157546947 + AluSc SINE Alu 1 301 -8 377 307 7 21 chr4 44781400 44781484 -157546863 + GA-rich Low_complexity Low_complexity 58 141 0 25 0 0 0 chr4 44782427 44782452 -157545895 + AT_rich Low_complexity Low_complexity 1 25 0 1830 202 82 32 chr4 44782637 44783078 -157545269 + L1MC4a LINE L1 7346 7808 0 185 267 100 17 chr4 44783810 44783870 -157544477 + L2 LINE L2 2686 2750 -564 1013 97 0 8 chr4 44783870 44784004 -157544343 + AluSq/x SINE Alu 1 133 -180 1963 138 0 13 chr4 44784008 44784313 -157544034 + AluSx SINE Alu 1 301 -11 440 292 119 25 chr4 44784576 44784819 -157543528 + L2 LINE L2 3009 3274 -39 2261 132 12 0 chr4 44785745 44786078 -157542269 + MER7A DNA MER2_type 12 346 0 523 156 57 41 chr4 44786698 44786820 -157541527 + MER5C DNA MER1_type 1 124 -200 202 243 338 0 chr4 44787583 44787731 -157540616 + MER5C DNA MER1_type 127 324 0 1637 146 26 0 chr4 44790173 44790440 -157537907 - L1MB3 LINE L1 -42 6141 5868 220 329 30 108 chr4 44792603 44792834 -157535513 + L2 LINE L2 3030 3242 -30 413 235 27 107 chr4 44793839 44794026 -157534321 - MIR SINE MIR -37 225 54 635 211 79 26 chr4 44794053 44794205 -157534142 - MER20 DNA MER1_type -59 160 1 285 268 14 0 chr4 44794473 44794544 -157533803 + L2 LINE L2 3241 3312 -1 2100 131 0 3 chr4 44795019 44795316 -157533031 + AluSx SINE Alu 14 309 -3 2271 100 0 0 chr4 44796359 44796650 -157531697 - AluSx SINE Alu -19 293 3 1788 149 43 0 chr4 44798004 44798306 -157530041 - MER1B DNA MER1_type -24 315 1 358 267 37 52 chr4 44798398 44798533 -157529814 - MIR SINE MIR -56 152 20 2158 112 0 0 chr4 44799063 44799370 -157528977 + AluSx SINE Alu 1 307 0 284 47 0 23 chr4 44799547 44799590 -157528757 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1147 87 40 0 chr4 44799703 44799853 -157528494 - L1PA11 LINE L1 -10 6164 6009 846 134 0 0 chr4 44800193 44800312 -157528035 - FRAM SINE Alu -17 159 41 925 204 11 16 chr4 44803151 44803337 -157525010 - MER5A DNA MER1_type 0 189 5 313 339 70 0 chr4 44803475 44803590 -157524757 - L2 LINE L2 -44 3228 3106 229 305 46 53 chr4 44804919 44805050 -157523297 - MIR3 SINE MIR -48 160 31 848 204 48 0 chr4 44805295 44805462 -157522885 + FAM SINE Alu 1 175 0 930 283 28 0 chr4 44805872 44806119 -157522228 - MIR SINE MIR -3 259 6 930 236 15 5 chr4 44806411 44806610 -157521737 - MER3 DNA MER1_type -8 201 1 616 237 126 0 chr4 44806798 44806988 -157521359 + MIR SINE MIR 20 233 -29 467 293 96 53 chr4 44806999 44807374 -157520973 + L2 LINE L2 2384 2774 -540 309 325 37 75 chr4 44807530 44807798 -157520549 + L2 LINE L2 2827 3084 -188 569 332 20 5 chr4 44807839 44808041 -157520306 + MIR SINE MIR 42 246 -16 35 78 0 0 chr4 44808105 44808182 -157520165 + AT_rich Low_complexity Low_complexity 1 77 0 313 259 36 45 chr4 44808283 44808395 -157519952 - LTR67 LTR ERVL -15 542 432 180 290 48 16 chr4 44808626 44808667 -157519680 + L2 LINE L2 2926 2971 -301 1473 164 70 0 chr4 44808667 44808923 -157519424 - AluJo SINE Alu -38 274 1 180 290 48 16 chr4 44808923 44808943 -157519404 + L2 LINE L2 2971 2989 -283 195 219 0 0 chr4 44809040 44809081 -157519266 + L2 LINE L2 3272 3312 -1 485 234 53 128 chr4 44809109 44809145 -157519202 - MIR SINE MIR -38 224 187 1989 137 0 3 chr4 44809145 44809452 -157518895 + AluSx SINE Alu 3 308 0 485 234 53 128 chr4 44809452 44809641 -157518706 - MIR SINE MIR -75 187 15 180 0 0 0 chr4 44810746 44810766 -157517581 + (A)n Simple_repeat Simple_repeat 1 20 0 214 140 40 0 chr4 44811556 44811606 -157516741 + (TA)n Simple_repeat Simple_repeat 2 53 0 26 30 0 0 chr4 44811667 44811700 -157516647 + AT_rich Low_complexity Low_complexity 1 33 0 388 306 37 25 chr4 44811931 44812173 -157516174 - L1M4 LINE L1 -1312 4834 4590 1922 189 96 32 chr4 44812378 44812817 -157515530 + MLT1C LTR MaLR 1 467 0 2169 113 0 0 chr4 44812869 44813160 -157515187 - AluSq SINE Alu -22 291 1 1252 104 14 77 chr4 44813516 44813692 -157514655 + L1MB3 LINE L1 5976 6137 -46 2383 72 0 13 chr4 44813692 44813997 -157514350 + AluY SINE Alu 1 301 -10 1252 104 14 77 chr4 44813997 44814041 -157514306 + L1MB3 LINE L1 6137 6182 -1 736 102 0 0 chr4 44814298 44814396 -157513951 - AluSg/x SINE Alu -5 304 207 684 164 26 0 chr4 44814497 44814613 -157513734 + L2 LINE L2 1833 1951 -1363 192 348 14 0 chr4 44814669 44814738 -157513609 + L2 LINE L2 2181 2250 -1064 269 132 0 0 chr4 44814738 44814776 -157513571 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 1458 237 104 43 chr4 44814777 44814866 -157513481 + L2 LINE L2 2240 2322 -992 2451 122 16 21 chr4 44814866 44815243 -157513104 - THE1C LTR MaLR 0 375 1 1458 237 104 43 chr4 44815243 44815643 -157512704 + L2 LINE L2 2322 2759 -555 2723 135 48 33 chr4 44815643 44816046 -157512301 + MLT1C LTR MaLR 1 413 -54 3722 123 9 26 chr4 44816046 44816582 -157511765 - MER1A DNA MER1_type 0 527 1 2723 135 48 33 chr4 44816582 44816638 -157511709 + MLT1C LTR MaLR 413 467 0 378 212 284 14 chr4 44816682 44816904 -157511443 + L2 LINE L2 2862 3143 -170 550 263 121 31 chr4 44816923 44817295 -157511052 + LTR16A LTR ERVL 1 450 0 352 202 124 22 chr4 44817296 44817385 -157510962 + L2 LINE L2 3176 3273 -40 345 177 0 0 chr4 44818968 44819030 -157509317 - Tigger5 DNA MER2_type -26 2297 2236 197 107 0 0 chr4 44819077 44819105 -157509242 - MIR SINE MIR -82 180 153 271 336 26 17 chr4 44819831 44819947 -157508400 + MIR SINE MIR 84 200 -62 186 133 0 0 chr4 44820157 44820187 -157508160 + (TATG)n Simple_repeat Simple_repeat 3 32 0 1806 159 84 18 chr4 44820637 44820971 -157507376 + MLT1A1 LTR MaLR 10 365 0 913 157 18 18 chr4 44821049 44821215 -157507132 + AluJb SINE Alu 132 297 -15 1655 250 120 5 chr4 44821225 44821777 -157506570 + L1ME3 LINE L1 5529 6143 -19 2179 104 7 7 chr4 44822528 44822836 -157505511 - AluSg SINE Alu -2 308 1 4524 183 36 30 chr4 44823758 44825188 -157503159 + L1MA9 LINE L1 4843 6278 -34 574 260 69 12 chr4 44825576 44825749 -157502598 - MIR SINE MIR -22 240 58 222 37 0 0 chr4 44826031 44826058 -157502289 + (GA)n Simple_repeat Simple_repeat 2 28 0 1668 145 6 93 chr4 44826298 44826622 -157501725 + AluJo SINE Alu 1 296 -16 1491 158 75 4 chr4 44826687 44826975 -157501372 + AluJo SINE Alu 1 307 0 21 36 0 0 chr4 44827132 44827160 -157501187 + AT_rich Low_complexity Low_complexity 1 28 0 1705 274 143 35 chr4 44827220 44828165 -157500182 + L2 LINE L2 1952 3109 -204 2435 61 3 0 chr4 44828165 44828458 -157499889 + AluY SINE Alu 1 294 -17 1705 274 143 35 chr4 44828458 44828688 -157499659 + L2 LINE L2 3109 3313 0 207 0 0 0 chr4 44828886 44828909 -157499438 + (T)n Simple_repeat Simple_repeat 1 23 0 2266 99 10 0 chr4 44829893 44830195 -157498152 + AluSx SINE Alu 1 305 -7 186 43 0 0 chr4 44830196 44830219 -157498128 + (CA)n Simple_repeat Simple_repeat 2 24 0 516 272 89 0 chr4 44830529 44830687 -157497660 - MIR SINE MIR -2 260 89 327 177 0 0 chr4 44830972 44831034 -157497313 + (TCTG)n Simple_repeat Simple_repeat 3 64 0 2041 130 3 7 chr4 44831706 44832005 -157496342 - AluJo SINE Alu -12 300 3 26 50 0 0 chr4 44832364 44832404 -157495943 + AT_rich Low_complexity Low_complexity 1 40 0 2557 61 0 10 chr4 44832404 44832716 -157495631 - AluY SINE Alu -2 309 1 310 301 57 20 chr4 44833305 44833506 -157494841 + MIR SINE MIR 48 205 -3 833 135 8 8 chr4 44833525 44833651 -157494696 + FLAM_C SINE Alu 1 126 -7 840 215 47 70 chr4 44833656 44833954 -157494393 + L1ME1 LINE L1 5874 6164 -2 255 229 29 0 chr4 44833960 44834030 -157494317 + MIR SINE MIR 179 250 -12 2020 140 0 10 chr4 44834330 44834650 -157493697 - AluJb SINE Alu 0 312 1 1738 213 147 15 chr4 44834695 44835239 -157493108 - L2 LINE L2 -767 2547 1932 2372 147 21 2 chr4 44835279 44835701 -157492646 + L1M4 LINE L1 5322 5751 -427 1196 202 19 4 chr4 44835692 44835954 -157492393 + L1M4 LINE L1 1041 1306 -5236 * 1876 195 47 31 chr4 44835997 44836315 -157492032 - MER101 LTR ERV1 -32 442 114 3319 201 19 43 chr4 44836315 44836382 -157491965 - MER72 LTR ERV1 0 722 655 2405 85 0 16 chr4 44836382 44836699 -157491648 + AluSx SINE Alu 1 312 0 3319 201 19 43 chr4 44836699 44837371 -157490976 - MER72 LTR ERV1 -67 655 1 1876 195 47 31 chr4 44837371 44837477 -157490870 - MER101 LTR ERV1 -360 114 11 247 75 0 25 chr4 44837477 44837517 -157490830 + L1M4 LINE L1 1305 1343 -5303 * 252 187 27 53 chr4 44837513 44837588 -157490759 - L1M4 LINE L1 -5512 1030 958 1754 195 3 3 chr4 44837617 44837925 -157490422 - L1M4 LINE L1 -5690 852 545 327 209 15 0 chr4 44838007 44838074 -157490273 - L1M4 LINE L1 -6474 68 1 1199 289 87 29 chr4 44838075 44838587 -157489760 - L1MDa LINE L1 -2523 4017 3536 1617 204 0 10 chr4 44838587 44838895 -157489452 - AluJo SINE Alu -7 305 1 1199 289 87 29 chr4 44838895 44839304 -157489043 - L1MDa LINE L1 -3004 3536 3011 22 0 0 0 chr4 44839305 44839327 -157489020 + AT_rich Low_complexity Low_complexity 1 22 0 6414 17 6 0 chr4 44839327 44840019 -157488328 - L1PA2 LINE L1 0 6155 5460 2424 223 59 19 chr4 44840038 44840617 -157487730 - MER76 LTR ERV -10 678 77 491 300 53 11 chr4 44840617 44840880 -157487467 - L1MDa LINE L1 -3653 2887 2614 993 190 35 10 chr4 44840882 44841082 -157487265 + AluJo SINE Alu 84 288 -24 2468 72 0 0 chr4 44841508 44841820 -157486527 - AluY SINE Alu 0 312 1 25 31 0 0 chr4 44841828 44841860 -157486487 + AT_rich Low_complexity Low_complexity 1 32 0 1087 179 6 0 chr4 44841892 44842060 -157486287 - FAM SINE Alu -3 172 4 433 299 85 22 chr4 44842113 44842337 -157486010 - L1MDa LINE L1 -4534 2006 1769 25 31 0 0 chr4 44842388 44842420 -157485927 + AT_rich Low_complexity Low_complexity 1 32 0 1952 167 0 0 chr4 44842651 44842945 -157485402 + AluSx SINE Alu 1 294 -18 2280 82 0 17 chr4 44843081 44843372 -157484975 - AluSc SINE Alu -23 286 1 994 112 14 7 chr4 44843372 44843515 -157484832 - AluSq/x SINE Alu -168 145 2 816 176 0 8 chr4 44843515 44843646 -157484701 - FLAM_A SINE Alu -3 130 1 270 189 19 0 chr4 44844134 44844187 -157484160 + L2 LINE L2 3254 3307 -6 476 299 40 19 chr4 44844687 44844874 -157483473 + MIR SINE MIR 3 192 -62 2229 105 0 23 chr4 44844967 44845273 -157483074 + AluY SINE Alu 1 299 -12 2233 111 3 0 chr4 44845487 44845784 -157482563 - AluSx SINE Alu -14 298 1 329 225 105 20 chr4 44845973 44846125 -157482222 - LTR67 LTR ERVL -2 523 384 2118 123 3 25 chr4 44846803 44847121 -157481226 - AluSx SINE Alu -1 311 1 1730 176 0 10 chr4 44847221 44847511 -157480836 - AluJo SINE Alu -25 287 1 486 280 182 19 chr4 44848068 44848282 -157480065 + MIR SINE MIR 5 253 -9 262 252 56 37 chr4 44848296 44848403 -157479944 + L1M4 LINE L1 17 125 -6417 317 303 46 13 chr4 44848784 44848936 -157479411 + L1M4 LINE L1 719 875 -5667 888 165 62 88 chr4 44849061 44849321 -157479026 + L1M4 LINE L1 4220 4472 -1674 1258 180 36 60 chr4 44849424 44849496 -157478851 - MER69 DNA AcHobo -359 2167 2095 2252 159 37 0 chr4 44849496 44849848 -157478499 - MLT1A1 LTR MaLR 0 365 1 1258 180 36 60 chr4 44849848 44850109 -157478238 - MER69 DNA AcHobo -431 2095 1842 * 1768 254 80 19 chr4 44850107 44850209 -157478138 - MER69 DNA AcHobo -1772 754 660 2899 121 41 2 chr4 44850209 44850621 -157477726 - MSTA LTR MaLR 0 428 1 1768 254 80 19 chr4 44850621 44851046 -157477301 - MER69 DNA AcHobo -1866 660 195 1039 183 15 60 chr4 44851149 44851344 -157477003 - MER69 DNA AcHobo -122 2404 2223 2100 109 30 13 chr4 44851344 44851647 -157476700 - AluSg SINE Alu -2 308 1 1039 183 15 60 chr4 44851647 44851719 -157476628 - MER69 DNA AcHobo -303 2223 2149 309 51 0 0 chr4 44851849 44851888 -157476459 + (T)n Simple_repeat Simple_repeat 1 39 0 779 197 5 116 chr4 44851980 44852068 -157476279 - MER97c DNA MER1_type? -523 567 511 1722 159 16 29 chr4 44852068 44852377 -157475970 + AluJo SINE Alu 1 305 -7 779 197 5 116 chr4 44852377 44852486 -157475861 - MER97c DNA MER1_type? -579 511 392 416 250 20 20 chr4 44852596 44852696 -157475651 + MER117 DNA MER1_type 97 196 -1 207 256 0 0 chr4 44852772 44852815 -157475532 + L2 LINE L2 3266 3308 -5 191 288 139 78 chr4 44852825 44853120 -157475227 + L3 LINE CR1 1091 1403 -174 757 228 133 9 chr4 44853170 44853403 -157474944 - MIR SINE MIR 0 262 1 2601 119 3 0 chr4 44853405 44853741 -157474606 + MER1B DNA MER1_type 1 337 0 233 273 34 0 chr4 44853764 44853852 -157474495 - MLT1L LTR MaLR -33 582 492 2696 133 7 5 chr4 44853858 44854263 -157474084 - MER65A LTR ERV1 0 445 40 2315 93 6 3 chr4 44854272 44854583 -157473764 - AluSq SINE Alu -1 312 1 803 215 6 0 chr4 44854586 44854749 -157473598 - AluJo/FRAM SINE Alu -20 292 129 2450 84 7 0 chr4 44854751 44855061 -157473286 - AluSp SINE Alu -1 312 1 332 68 0 0 chr4 44855065 44855109 -157473238 - MER65B LTR ERV1 -487 44 1 434 280 91 14 chr4 44855112 44855255 -157473092 - MLT1L LTR MaLR -135 480 327 338 114 0 0 chr4 44855358 44855402 -157472945 - Alu SINE Alu -257 44 1 2254 215 46 10 chr4 44855699 44856221 -157472126 + L1ME1 LINE L1 5621 6161 -5 890 198 59 102 chr4 44856224 44856547 -157471800 + MER52A LTR ERV1 662 970 -785 * 1176 229 205 64 chr4 44856541 44857117 -157471230 + MER52A LTR ERV1 1099 1755 0 1601 110 144 19 chr4 44857833 44858097 -157470250 - AluSx SINE Alu -15 297 1 201 281 256 37 chr4 44858225 44858307 -157470040 + MIR SINE MIR 40 139 -69 2203 96 24 0 chr4 44858376 44858667 -157469680 - AluSx SINE Alu -14 298 1 4093 208 26 15 chr4 44858962 44859911 -157468436 - L1ME1 LINE L1 -6 6160 5204 293 170 0 0 chr4 44859940 44859993 -157468354 - FLAM_A SINE Alu 0 133 81 231 220 17 0 chr4 44859995 44860054 -157468293 + AluJ/FLAM SINE Alu 42 101 -201 2179 195 53 8 chr4 44860105 44860617 -157467730 - L1ME1 LINE L1 -961 5185 4651 1183 109 18 0 chr4 44860757 44860922 -157467425 + AluSc SINE Alu 141 308 -1 852 100 0 0 chr4 44860929 44861039 -157467308 - AluSq/x SINE Alu -203 110 1 21 0 0 0 chr4 44861202 44861223 -157467124 + AT_rich Low_complexity Low_complexity 1 21 0 758 149 4 14 chr4 44861284 44861542 -157466805 + AluJo SINE Alu 1 306 -6 462 300 93 36 chr4 44861572 44862118 -157466229 - L1ME4a LINE L1 -83 6038 5400 1733 175 3 7 chr4 44862120 44862423 -157465924 - AluJo SINE Alu -9 303 2 2115 120 3 0 chr4 44862795 44863086 -157465261 - AluSx SINE Alu -20 292 1 180 0 0 0 chr4 44863322 44863342 -157465005 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 320 326 39 56 chr4 44863807 44863985 -157464362 + MIR SINE MIR 8 182 -80 2255 128 42 31 chr4 44864008 44864368 -157463979 - THE1B LTR MaLR 0 364 1 685 227 58 112 chr4 44864718 44864996 -157463351 - Charlie8 DNA MER1_type -2128 289 27 2211 208 68 30 chr4 44866024 44866045 -157462302 + L1MB7 LINE L1 5585 5604 -580 2203 97 14 3 chr4 44866045 44866333 -157462014 + AluSx SINE Alu 1 291 -21 2211 208 68 30 chr4 44866333 44866866 -157461481 + L1MB7 LINE L1 5604 6164 -20 2443 88 0 0 chr4 44866866 44867161 -157461186 - AluSq SINE Alu -18 295 1 2211 208 68 30 chr4 44867161 44867181 -157461166 + L1MB7 LINE L1 6164 6182 -2 21 0 0 0 chr4 44867925 44867946 -157460401 + AT_rich Low_complexity Low_complexity 1 21 0 342 45 0 0 chr4 44868455 44868499 -157459848 + (GA)n Simple_repeat Simple_repeat 2 45 0 486 159 34 0 chr4 44868732 44868820 -157459527 + MER53 DNA DNA 1 91 -98 256 293 60 10 chr4 44868888 44868999 -157459348 + MIR SINE MIR 45 160 -61 605 254 97 6 chr4 44869078 44869243 -157459104 - MLT1J LTR MaLR -331 180 1 1226 130 6 0 chr4 44869544 44869721 -157458626 - AluY SINE Alu -1 310 133 239 314 23 0 chr4 44869965 44870051 -157458296 - L3 LINE CR1 -1169 408 321 186 133 0 0 chr4 44870149 44870179 -157458168 + (TTC)n Simple_repeat Simple_repeat 2 31 0 359 333 114 38 chr4 44870387 44870530 -157457817 + L2 LINE L2 2989 3120 -152 2579 42 3 6 chr4 44870530 44870842 -157457505 + AluY SINE Alu 1 311 0 359 333 114 38 chr4 44870842 44870962 -157457385 + L2 LINE L2 3120 3272 0 278 189 0 0 chr4 44871057 44871110 -157457237 - L1MB8 LINE L1 0 6178 6126 336 301 92 12 chr4 44871217 44871390 -157456957 + MIR SINE MIR 21 207 -55 25 0 0 0 chr4 44875321 44875346 -157453001 + AT_rich Low_complexity Low_complexity 1 25 0 531 176 0 0 chr4 44875353 44875438 -157452909 - FLAM_A SINE Alu -57 85 1 1537 166 96 0 chr4 44877789 44878060 -157450287 + AluJb SINE Alu 1 297 -15 1500 150 92 8 chr4 44878277 44878517 -157449830 - AluSx SINE Alu -52 260 1 26 30 0 0 chr4 44878649 44878682 -157449665 + AT_rich Low_complexity Low_complexity 1 33 0 1782 162 15 0 chr4 44878682 44878954 -157449393 - AluJo SINE Alu -23 289 14 203 297 69 20 chr4 44879017 44879118 -157449229 + MIR SINE MIR 8 113 -149 1306 172 56 8 chr4 44879186 44879436 -157448911 - MER61A LTR ERV1 -81 262 1 186 350 112 0 chr4 44879619 44879762 -157448585 + L2 LINE L2 2471 2629 -685 21 0 0 0 chr4 44879768 44879789 -157448558 + AT_rich Low_complexity Low_complexity 1 21 0 4495 137 12 59 chr4 44879789 44880145 -157448202 - L1MB3 LINE L1 -1 6182 5811 2224 107 3 0 chr4 44880145 44880480 -157447867 - AluSg SINE Alu 0 310 1 4495 137 12 59 chr4 44880480 44880965 -157447382 - L1MB3 LINE L1 -372 5811 5381 398 202 96 0 chr4 44880970 44881074 -157447273 + L1 LINE L1 5185 5298 -848 2469 86 0 13 chr4 44881110 44881425 -157446922 - AluY SINE Alu 0 311 1 734 181 7 0 chr4 44881489 44881638 -157446709 + GA-rich Low_complexity Low_complexity 3 152 0 534 235 22 7 chr4 44881766 44881902 -157446445 - MER5B DNA MER1_type -1 177 40 358 167 127 28 chr4 44881905 44882028 -157446319 + L1MB5 LINE L1 6039 6180 0 241 323 0 24 chr4 44882097 44882221 -157446126 - MER5A DNA MER1_type -25 164 44 2137 104 35 0 chr4 44882221 44882508 -157445839 - AluSg SINE Alu -13 297 1 1173 140 0 0 chr4 44882642 44882806 -157445541 - AluSg/x SINE Alu -12 300 137 2054 91 24 170 chr4 44883219 44883637 -157444710 + LTR18A LTR ERVL 1 357 0 7874 108 35 16 chr4 44884421 44884823 -157443524 + Tigger3b DNA MER2_type 1 394 -2634 2638 52 0 3 chr4 44884823 44885130 -157443217 + AluY SINE Alu 1 306 -5 7874 108 35 16 chr4 44885130 44885935 -157442412 + Tigger3b DNA MER2_type 394 1231 0 229 375 62 7 chr4 44885961 44886105 -157442242 + L2 LINE L2 3121 3272 0 216 0 0 0 chr4 44886740 44886764 -157441583 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5541 158 38 35 chr4 44887643 44888676 -157439671 - L1PA16 LINE L1 -8 6158 5118 1770 161 21 3 chr4 44888676 44888962 -157439385 - AluSx SINE Alu -21 291 1 5541 158 38 35 chr4 44888962 44889865 -157438482 - L1PA16 LINE L1 -1048 5118 4219 673 129 69 9 chr4 44889865 44889981 -157438366 + AluJb SINE Alu 171 293 -19 2883 172 19 2 chr4 44889981 44890499 -157437848 - L1 LINE L1 -1924 4222 3696 731 91 0 0 chr4 44890499 44890598 -157437749 - AluY SINE Alu -9 302 204 270 0 0 0 chr4 44891117 44891147 -157437200 + (TTA)n Simple_repeat Simple_repeat 1 30 0 787 41 10 0 chr4 44891148 44891245 -157437102 - HY3 scRNA scRNA -3 98 1 500 188 278 0 chr4 44891393 44891537 -157436810 + MER5A DNA MER1_type 1 184 -5 453 283 133 47 chr4 44892872 44893305 -157435042 - MLT1H LTR MaLR 0 549 22 1341 209 89 17 chr4 44893488 44893847 -157434500 + LTR16A1 LTR ERVL 1 385 -72 1835 155 13 35 chr4 44893965 44894282 -157434065 - AluSx SINE Alu -2 310 1 2364 148 45 26 chr4 44894646 44894946 -157433401 - MSTB LTR MaLR 0 426 114 2006 145 59 17 chr4 44894946 44895304 -157433043 - THE1C LTR MaLR -2 373 1 2364 148 45 26 chr4 44895304 44895421 -157432926 - MSTB LTR MaLR -312 114 1 945 264 74 82 chr4 44895454 44895966 -157432381 + MLT1K LTR MaLR 67 574 -14 23 0 0 0 chr4 44896368 44896391 -157431956 + AT_rich Low_complexity Low_complexity 1 23 0 306 283 35 96 chr4 44896544 44896671 -157431676 - MIR SINE MIR -57 205 93 1810 125 0 0 chr4 44896671 44896919 -157431428 + AluSx SINE Alu 40 287 -25 306 283 35 96 chr4 44896919 44896989 -157431358 - MIR SINE MIR -169 93 20 616 267 44 19 chr4 44897122 44897328 -157431019 - L2 LINE L2 0 3313 3103 846 83 0 0 chr4 44897332 44897439 -157430908 + MSTB LTR MaLR 1 107 -319 3024 146 7 11 chr4 44897439 44897898 -157430449 - LTR32 LTR ERVL 0 471 15 1564 164 53 50 chr4 44897898 44898221 -157430126 + MSTB LTR MaLR 103 426 0 458 252 7 59 chr4 44898221 44898356 -157429991 - L2 LINE L2 -226 3087 2960 468 121 0 0 chr4 44898376 44898442 -157429905 - THE1B LTR MaLR 0 364 299 610 41 0 0 chr4 44898542 44898615 -157429732 - THE1C LTR MaLR -302 73 1 1260 134 22 60 chr4 44898818 44898910 -157429437 + L1MD3 LINE L1 7727 7821 -174 2385 157 74 0 chr4 44898910 44899331 -157429016 + LTR47A LTR ERVL 1 452 0 1260 134 22 60 chr4 44899331 44899507 -157428840 + L1MD3 LINE L1 7821 7985 -10 1614 143 0 40 chr4 44899516 44899767 -157428580 + AluJo SINE Alu 1 241 -71 662 233 82 48 chr4 44899778 44900183 -157428164 + LTR1B LTR ERV1 39 1216 -333 314 121 30 45 chr4 44900386 44900452 -157427895 + AluJo SINE Alu 238 302 0 9969 104 3 0 chr4 44900517 44901918 -157426429 + L1P LINE L1 3952 5356 -790 363 194 129 0 chr4 44902018 44902111 -157426236 - L1ME3 LINE L1 -33 6129 6025 400 281 54 9 chr4 44902156 44902377 -157425970 + HAL1 LINE L1 1002 1232 -1275 1091 96 75 64 chr4 44902385 44902572 -157425775 - AluJo SINE Alu -38 274 86 1962 139 0 0 chr4 44902599 44902873 -157425474 - AluSx SINE Alu -38 274 1 586 267 104 10 chr4 44902892 44903094 -157425253 - L1MEd LINE L1 -5359 760 540 1531 167 4 19 chr4 44903248 44903512 -157424835 + AluJb SINE Alu 38 297 -15 743 170 0 13 chr4 44903591 44903908 -157424439 + (TG)n Simple_repeat Simple_repeat 1 312 0 549 277 67 32 chr4 44903913 44904198 -157424149 - L1MEd LINE L1 -5799 320 26 192 302 0 19 chr4 44904363 44904416 -157423931 - L2 LINE L2 -254 3059 3008 23 54 0 0 chr4 44904554 44904591 -157423756 + AT_rich Low_complexity Low_complexity 1 37 0 1008 273 96 13 chr4 44904736 44905132 -157423215 + LTR16B LTR ERVL 1 429 -35 2269 121 3 0 chr4 44905142 44905449 -157422898 - AluSx SINE Alu 0 312 5 1775 167 0 46 chr4 44905463 44905787 -157422560 - AluJo SINE Alu -3 309 1 231 219 0 0 chr4 44905793 44905834 -157422513 + LTR16B LTR ERVL 424 464 0 2729 172 20 7 chr4 44905864 44906642 -157421705 + L1MB8 LINE L1 4980 5766 -412 40407 73 6 7 chr4 44906653 44912823 -157415524 + L1PA6 LINE L1 11 6172 0 1389 115 50 0 chr4 44912933 44913151 -157415196 + L1MB8 LINE L1 5756 5984 -200 820 123 0 8 chr4 44913164 44913294 -157415053 + L1MB8 LINE L1 6045 6173 -5 216 0 0 0 chr4 44913299 44913323 -157415024 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2021 129 30 10 chr4 44913425 44913551 -157414796 + AluSx SINE Alu 1 123 -189 315 0 0 0 chr4 44913551 44913586 -157414761 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2021 129 30 10 chr4 44913586 44913761 -157414586 + AluSx SINE Alu 123 308 -4 243 230 160 0 chr4 44913793 44913893 -157414454 + L1ME4a LINE L1 6004 6119 -2 3188 100 29 23 chr4 44913935 44914281 -157414066 + L1MA3 LINE L1 5791 6142 -163 2259 112 0 0 chr4 44914281 44914584 -157413763 + AluSg SINE Alu 1 303 -7 3188 100 29 23 chr4 44914584 44914749 -157413598 + L1MA3 LINE L1 6142 6305 0 657 228 40 7 chr4 44916946 44917095 -157411252 - MER58B DNA MER1_type 0 341 188 426 238 139 45 chr4 44917148 44917304 -157411043 - MIR SINE MIR -38 224 43 2005 147 3 3 chr4 44917304 44917604 -157410743 + AluSx SINE Alu 1 300 -12 426 238 139 45 chr4 44917604 44917649 -157410698 - MIR SINE MIR -219 43 4 777 124 51 66 chr4 44918092 44918229 -157410118 - AluJo SINE Alu -177 135 1 189 0 0 0 chr4 44918234 44918255 -157410092 + (T)n Simple_repeat Simple_repeat 1 21 0 1543 173 66 0 chr4 44918639 44918910 -157409437 - AluJo SINE Alu -23 289 1 195 69 0 0 chr4 44919237 44919266 -157409081 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2240 74 0 11 chr4 44919268 44919553 -157408794 - AluY SINE Alu -29 282 1 231 186 0 144 chr4 44920655 44920752 -157407595 - L1MC3 LINE L1 -21 7764 7682 1185 100 6 0 chr4 44920752 44920912 -157407435 - MLT2A2 LTR ERVL 0 453 293 1957 113 37 10 chr4 44920960 44921260 -157407087 - MLT2A2 LTR ERVL -145 308 1 3181 176 112 22 chr4 44921269 44922001 -157406346 - L1MC3 LINE L1 -153 7632 6835 45263 36 2 1 chr4 44922429 44928562 -157399785 - L1PA4 LINE L1 0 6155 15 1762 161 7 3 chr4 44928568 44928859 -157399488 - AluJb SINE Alu -20 292 1 2147 113 3 44 chr4 44928869 44929188 -157399159 - AluSx SINE Alu -6 306 1 2305 117 20 8 chr4 44929692 44930043 -157398304 - THE1A LTR MaLR 0 355 1 2261 110 0 0 chr4 44930517 44930816 -157397531 - AluSq SINE Alu -14 299 1 495 257 176 11 chr4 44930994 44931181 -157397166 - MIR SINE MIR -19 243 26 292 256 239 0 chr4 44931205 44931322 -157397025 + MER69 DNA AcHobo 1 145 -2381 23 33 0 0 chr4 44931418 44931448 -157396899 + AT_rich Low_complexity Low_complexity 1 30 0 2754 92 0 11 chr4 44931596 44931964 -157396383 - THE1B LTR MaLR 0 364 1 578 194 21 56 chr4 44931983 44932127 -157396220 - FRAM SINE Alu -5 171 33 467 288 87 0 chr4 44932139 44932323 -157396024 + MIR SINE MIR 42 241 -21 2290 61 55 0 chr4 44932512 44932805 -157395542 - AluY SINE Alu -1 310 2 2110 146 0 3 chr4 44933802 44934111 -157394236 - AluSx SINE Alu -4 308 1 1949 148 3 3 chr4 44934960 44935251 -157393096 + AluJo SINE Alu 1 291 -21 631 204 9 0 chr4 44935329 44935442 -157392905 + Charlie1 DNA MER1_type 7 120 -2641 * 887 162 114 57 chr4 44935441 44935598 -157392749 + Charlie1 DNA MER1_type 2423 2570 -191 1814 168 3 10 chr4 44935598 44935895 -157392452 - AluJb SINE Alu -17 295 1 887 162 114 57 chr4 44935895 44936052 -157392295 + Charlie1 DNA MER1_type 2570 2755 -6 2402 107 3 0 chr4 44936107 44936415 -157391932 - AluSq SINE Alu -4 309 1 22 70 0 0 chr4 44936572 44936615 -157391732 + AT_rich Low_complexity Low_complexity 1 43 0 312 247 10 21 chr4 44936647 44936743 -157391604 - MLT1A1 LTR MaLR -103 287 180 1298 240 123 20 chr4 44937300 44937963 -157390384 - MER20B DNA MER1_type -3 780 2 1370 207 22 20 chr4 44937995 44938535 -157389812 + MLT1E3 LTR MaLR 1 624 0 772 191 0 0 chr4 44938548 44938679 -157389668 - FLAM_C SINE Alu -2 131 1 1230 106 0 0 chr4 44939360 44939520 -157388827 + AluSg/x SINE Alu 134 293 -17 1305 254 76 27 chr4 44939990 44940435 -157387912 - MLT1C LTR MaLR 0 467 1 2206 139 129 5 chr4 44941845 44942226 -157386121 + MSTA LTR MaLR 1 428 0 353 276 31 20 chr4 44942370 44942468 -157385879 - MLT1K LTR MaLR -346 242 144 1717 166 9 52 chr4 44942643 44942969 -157385378 - AluJo SINE Alu 0 312 1 1744 166 28 0 chr4 44943009 44943292 -157385055 - AluJo SINE Alu -21 291 1 2022 118 0 17 chr4 44944211 44944537 -157383810 + AluSx SINE Alu 1 321 0 1364 153 13 13 chr4 44944543 44944771 -157383576 + AluJo SINE Alu 5 232 -80 380 140 0 0 chr4 44945018 44945075 -157383272 + AluJo SINE Alu 235 291 -11 405 289 74 7 chr4 44946389 44946524 -157381823 - MER5B DNA MER1_type 0 178 35 2326 147 29 154 chr4 44946846 44947546 -157380801 + LTR9 LTR ERV1 1 612 0 1562 204 7 20 chr4 44947640 44947944 -157380403 + AluSx SINE Alu 1 300 -12 31 0 0 0 chr4 44947944 44947975 -157380372 + AT_rich Low_complexity Low_complexity 1 31 0 3037 158 72 2 chr4 44948055 44948648 -157379699 - L1MB7 LINE L1 -9 6175 5541 2349 122 51 46 chr4 44949155 44949574 -157378773 + LTR23 LTR ERV1 1 424 -13 2220 173 110 115 chr4 44949574 44950303 -157378044 + LTR8A LTR ERV1 1 725 -2 2349 122 51 46 chr4 44950303 44950318 -157378029 + LTR23 LTR ERV1 424 437 0 2367 100 0 0 chr4 44950513 44950813 -157377534 - AluSg SINE Alu -10 300 1 2223 197 76 15 chr4 44950836 44951308 -157377039 - LTR31 LTR ERV1 -15 604 104 744 292 6 38 chr4 44951555 44951891 -157376456 + L1ME LINE L1 5483 5810 -352 185 267 22 0 chr4 44951901 44951946 -157376401 + MER5A DNA MER1_type 12 57 -132 332 164 134 0 chr4 44952137 44952204 -157376143 + LTR43 LTR ERV1 1 76 -526 1917 135 58 15 chr4 44952222 44952548 -157375799 + LTR43 LTR ERV1 25 364 -238 2132 135 143 11 chr4 44952548 44952926 -157375421 + MSTA LTR MaLR 1 428 0 3958 119 11 63 chr4 44952928 44953593 -157374754 + MSTA-int LTR MaLR 3 632 -948 673 155 0 17 chr4 44953593 44953709 -157374638 + MLT1I LTR MaLR 296 409 0 1585 195 7 17 chr4 44954258 44954555 -157373792 - AluJo SINE Alu -18 294 1 1146 272 72 17 chr4 44955390 44955849 -157372498 - L2 LINE L2 -1 3312 2829 203 147 0 0 chr4 44955846 44955880 -157372467 + L2 LINE L2 3280 3313 0 * 205 331 57 32 chr4 44956581 44956705 -157371642 + MER5A DNA MER1_type 63 189 0 1622 198 47 48 chr4 44957087 44957567 -157370780 + MLT1F LTR MaLR 1 559 -8 959 214 90 53 chr4 44957652 44957974 -157370373 - L1ME3A LINE L1 -1 6169 5836 941 279 107 7 chr4 44957999 44958081 -157370266 - L1ME3A LINE L1 -852 5294 5222 1962 114 26 65 chr4 44958081 44958388 -157369959 - AluSx SINE Alu -17 295 1 941 279 107 7 chr4 44958388 44958743 -157369604 - L1ME3A LINE L1 -924 5222 4813 2398 171 42 133 chr4 44958757 44959521 -157368826 + LTR8A LTR ERV1 34 727 0 2384 76 0 13 chr4 44959534 44959838 -157368509 - AluY SINE Alu -11 300 1 256 268 0 0 chr4 44959851 44959922 -157368425 - L1ME3A LINE L1 -1592 4554 4484 962 75 0 45 chr4 44959927 44960061 -157368286 - L1PA8A LINE L1 -13 6118 5991 328 83 0 42 chr4 44960161 44960209 -157368138 - THE1C LTR MaLR -329 46 1 474 244 218 5 chr4 44960589 44960786 -157367561 + MIR SINE MIR 14 252 -10 211 320 110 35 chr4 44961170 44961370 -157366977 + L2 LINE L2 2845 3059 -254 265 220 70 20 chr4 44961387 44961487 -157366860 - LTR33 LTR ERVL -24 497 393 374 262 16 84 chr4 44961739 44961852 -157366495 + L2 LINE L2 3132 3228 -85 307 54 0 36 chr4 44961852 44961908 -157366439 + (TG)n Simple_repeat Simple_repeat 2 55 0 374 262 16 84 chr4 44961908 44961985 -157366362 + L2 LINE L2 3228 3309 -4 230 173 0 19 chr4 44962568 44962620 -157365727 + G-rich Low_complexity Low_complexity 1 51 0 542 205 31 16 chr4 44964482 44964609 -157363738 - L1ME3 LINE L1 -7 6155 6027 379 308 0 8 chr4 44965813 44965933 -157362414 + MIR SINE MIR 3 121 -141 532 209 8 30 chr4 44966004 44966138 -157362209 + MIR SINE MIR 130 260 -2 279 264 0 0 chr4 44966139 44966230 -157362117 + (TTA)n Simple_repeat Simple_repeat 2 92 0 217 244 0 0 chr4 44966712 44966757 -157361590 + CT-rich Low_complexity Low_complexity 4 48 0 208 217 0 0 chr4 44968004 44968050 -157360297 + (ATG)n Simple_repeat Simple_repeat 3 48 0 1979 151 51 43 chr4 44968687 44969059 -157359288 - THE1C LTR MaLR 0 375 1 2115 99 0 81 chr4 44969409 44969741 -157358606 + AluY SINE Alu 1 305 -6 23 54 0 0 chr4 44969924 44969961 -157358386 + AT_rich Low_complexity Low_complexity 1 37 0 412 312 138 4 chr4 44970151 44970404 -157357943 - L2 LINE L2 -15 3298 3012 540 310 29 36 chr4 44971051 44971332 -157357015 - MLT1J LTR MaLR -209 302 24 180 0 0 0 chr4 44971790 44971810 -157356537 + (TG)n Simple_repeat Simple_repeat 2 21 0 632 288 13 0 chr4 44972718 44972871 -157355476 - MIR SINE MIR -98 164 10 350 323 169 60 chr4 44974824 44975226 -157353121 - L2 LINE L2 0 3272 2827 498 233 214 37 chr4 44975383 44975598 -157352749 - MIR SINE MIR -4 258 6 2455 114 141 5 chr4 44975604 44975981 -157352366 + MSTA LTR MaLR 1 428 0 22 56 0 0 chr4 44976346 44976382 -157351965 + AT_rich Low_complexity Low_complexity 1 36 0 542 241 75 35 chr4 44976427 44976626 -157351721 - MLT1L LTR MaLR 0 615 409 27 29 0 0 chr4 44978431 44978465 -157349882 + AT_rich Low_complexity Low_complexity 1 34 0 703 150 56 50 chr4 44978666 44978826 -157349521 + L1MB7 LINE L1 6008 6168 -16 308 219 45 63 chr4 44978923 44979076 -157349271 - MLT1G LTR MaLR -13 577 421 264 287 43 17 chr4 44979209 44979324 -157349023 - MLT1I LTR MaLR -265 144 27 1965 174 59 50 chr4 44979442 44979866 -157348481 - MSTC LTR MaLR 0 428 1 678 260 96 23 chr4 44980126 44980345 -157348002 + MIR SINE MIR 28 262 0 290 312 178 7 chr4 44980358 44980634 -157347713 - L2 LINE L2 -530 2784 2462 2802 188 26 42 chr4 44980885 44981453 -157346894 - MLT1F1 LTR MaLR -8 559 1 2186 121 3 22 chr4 44981640 44981955 -157346392 - AluSx SINE Alu -3 309 1 186 43 0 0 chr4 44981972 44981995 -157346352 + (CCA)n Simple_repeat Simple_repeat 1 23 0 797 170 21 21 chr4 44982155 44982296 -157346051 - FLAM_C SINE Alu -1 142 2 180 111 0 0 chr4 44982314 44982341 -157346006 + (T)n Simple_repeat Simple_repeat 1 27 0 436 209 281 36 chr4 44982394 44982533 -157345814 - MER5B DNA MER1_type 0 178 6 256 224 0 0 chr4 44982883 44982932 -157345415 - L2 LINE L2 0 3313 3265 1217 241 30 45 chr4 44983330 44983666 -157344681 + MLT1H LTR MaLR 23 353 -196 952 193 45 5 chr4 44983680 44983882 -157344465 - MER20 DNA MER1_type -4 215 6 236 208 151 0 chr4 44983903 44983956 -157344391 + MLT1L LTR MaLR 343 403 -146 205 286 174 0 chr4 44984500 44984598 -157343749 + L2 LINE L2 2933 3047 -225 1757 159 7 7 chr4 44984652 44984941 -157343406 - AluJo SINE Alu -23 289 1 330 380 7 15 chr4 44985033 44985170 -157343177 - L2 LINE L2 -18 3254 3119 275 373 0 17 chr4 44985441 44985559 -157342788 + MER5B DNA MER1_type 4 119 -59 210 193 0 0 chr4 44985559 44985616 -157342731 + (TA)n Simple_repeat Simple_repeat 2 58 0 232 239 0 0 chr4 44985616 44985662 -157342685 + MER5B DNA MER1_type 128 173 -5 468 260 50 98 chr4 44985696 44986034 -157342313 - L2 LINE L2 -1195 2119 1798 2428 60 0 13 chr4 44986057 44986358 -157341989 - AluY SINE Alu -14 297 1 653 258 7 0 chr4 44988190 44988345 -157340002 + MIR SINE MIR 90 245 -17 2965 149 149 2 chr4 44988769 44989325 -157339022 + L1MD3 LINE L1 7356 7993 -2 1129 231 73 55 chr4 44989449 44989830 -157338517 - L2 LINE L2 -36 3277 2890 2147 107 10 3 chr4 44990065 44990363 -157337984 + AluSx SINE Alu 1 300 -12 2316 89 0 32 chr4 44992545 44992858 -157335489 - AluSq SINE Alu -10 303 1 1167 249 128 19 chr4 44993039 44993501 -157334846 - L2 LINE L2 0 3313 2756 195 69 0 0 chr4 44993834 44993863 -157334484 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 2148 109 16 7 chr4 44993934 44994238 -157334109 + AluSx SINE Alu 1 307 -5 392 276 157 33 chr4 44994361 44994571 -157333776 + MLT1L LTR MaLR 150 385 -230 330 274 105 8 chr4 44994597 44994721 -157333626 + MLT1L LTR MaLR 475 610 -5 360 257 34 84 chr4 44994999 44995236 -157333111 - L1M4 LINE L1 -3525 2621 2397 729 12 0 0 chr4 44995525 44995607 -157332740 - L1PA3 LINE L1 -1 6154 6073 400 222 109 154 chr4 44996940 44997001 -157331346 - MIR SINE MIR -51 211 149 2122 84 27 34 chr4 44997001 44997297 -157331050 - AluSc SINE Alu -15 294 1 400 222 109 154 chr4 44997297 44997456 -157330891 - MIR SINE MIR -113 149 1 195 167 28 0 chr4 44997531 44997567 -157330780 - L3b LINE CR1 -8 1575 1539 10513 30 0 0 chr4 44998210 44999434 -157328913 - L1PA3 LINE L1 -856 5290 4067 7899 25 1 0 chr4 44999434 45000304 -157328043 + L1PA3 LINE L1 5283 6154 -1 2276 114 0 0 chr4 45000615 45000921 -157327426 + AluSx SINE Alu 2 307 -5 451 232 20 0 chr4 45001387 45001486 -157326861 - MLT1I LTR MaLR -15 394 294 2211 116 0 3 chr4 45001811 45002104 -157326243 + AluSx SINE Alu 1 292 -20 565 161 93 0 chr4 45002991 45003109 -157325238 + L1MA4 LINE L1 6172 6300 0 527 237 0 0 chr4 45053476 45053594 -157274753 + MIR SINE MIR 132 249 -13 959 140 35 0 chr4 45053762 45053933 -157274414 - L1MB3 LINE L1 0 6183 6007 522 334 78 22 chr4 45055988 45056488 -157271859 + L2 LINE L2 1744 2271 -1043 213 320 175 21 chr4 45057201 45057298 -157271049 + L2 LINE L2 3136 3247 -25 223 344 32 39 chr4 45057319 45057473 -157270874 + L3 LINE CR1 1424 1576 -1 462 310 65 10 chr4 45058374 45058574 -157269773 - MIR SINE MIR 0 262 52 236 235 20 0 chr4 45058771 45058822 -157269525 - L2 LINE L2 -15 3257 3206 396 0 0 0 chr4 45060265 45060309 -157268038 + (CA)n Simple_repeat Simple_repeat 2 45 0 1476 252 57 12 chr4 45061675 45062096 -157266251 + MLT1J1 LTR MaLR 1 440 -6 189 306 56 0 chr4 45062547 45062619 -157265728 - MIR SINE MIR -76 132 57 252 310 85 64 chr4 45062812 45063202 -157265145 - L2 LINE L2 -935 2379 1982 268 348 36 0 chr4 45063296 45063408 -157264939 - L3 LINE CR1 -1008 569 454 421 261 46 31 chr4 45063487 45063617 -157264730 + MER94 DNA DNA 1 132 -2 335 267 181 19 chr4 45064119 45064224 -157264123 - L2 LINE L2 0 3313 3192 1080 196 28 14 chr4 45065048 45065284 -157263063 - AluJb SINE Alu 0 305 67 401 211 86 97 chr4 45065983 45066158 -157262189 - MER104 DNA Tc2 -5 175 3 397 349 29 34 chr4 45066174 45066383 -157261964 - L2 LINE L2 -850 2464 2257 862 164 7 33 chr4 45066643 45066795 -157261552 + AluJo SINE Alu 6 153 -159 666 272 53 19 chr4 45066933 45067139 -157261208 + MIR SINE MIR 3 215 -47 195 162 0 0 chr4 45067186 45067223 -157261124 + GA-rich Low_complexity Low_complexity 3 39 0 2006 116 0 0 chr4 45067370 45067628 -157260719 + AluSq SINE Alu 1 258 -55 198 233 174 35 chr4 45067694 45067780 -157260567 - L2 LINE L2 -21 3251 3154 487 294 28 33 chr4 45068588 45068768 -157259579 + MIR3 SINE MIR 19 197 -11 422 268 71 0 chr4 45068801 45068928 -157259419 - MIR SINE MIR -6 256 121 368 230 46 0 chr4 45070787 45070874 -157257473 + MIR SINE MIR 72 162 -100 1152 255 90 53 chr4 45072704 45073139 -157255208 - MLT1J LTR MaLR -60 451 1 194 333 0 16 chr4 45073395 45073458 -157254889 - L2 LINE L2 -196 3076 3015 290 271 114 65 chr4 45073530 45073792 -157254555 - MLT1K LTR MaLR -151 437 163 534 227 107 70 chr4 45073874 45074116 -157254231 + L2 LINE L2 3058 3308 -5 2111 121 0 0 chr4 45075188 45075469 -157252878 - AluSx SINE Alu -31 281 1 26 0 0 0 chr4 45075471 45075497 -157252850 + AT_rich Low_complexity Low_complexity 1 26 0 254 71 0 24 chr4 45075872 45075914 -157252433 + (GA)n Simple_repeat Simple_repeat 1 41 0 2118 156 36 46 chr4 45076049 45076465 -157251882 - L1MA7 LINE L1 0 6291 5880 486 274 51 25 chr4 45076487 45076644 -157251703 + MIR SINE MIR 46 206 -56 308 229 10 62 chr4 45076660 45076756 -157251591 + L1MC4 LINE L1 6613 6703 -1339 303 157 37 46 chr4 45076756 45076864 -157251483 + (CATATA)n Simple_repeat Simple_repeat 2 108 0 23 33 0 0 chr4 45077797 45077827 -157250520 + AT_rich Low_complexity Low_complexity 1 30 0 693 267 92 5 chr4 45078644 45078861 -157249486 - MIR SINE MIR 0 262 27 766 226 81 60 chr4 45079045 45079280 -157249067 - MIR SINE MIR -18 244 5 212 162 0 0 chr4 45079302 45079339 -157249008 + MIR SINE MIR 170 206 -56 411 318 0 31 chr4 45081555 45081684 -157246663 + L2 LINE L2 3148 3272 0 378 0 0 0 chr4 45082335 45082377 -157245970 + (TG)n Simple_repeat Simple_repeat 2 43 0 742 232 59 32 chr4 45082471 45082691 -157245656 - MER112 DNA MER1_type -6 254 29 2121 132 0 0 chr4 45082794 45083090 -157245257 + AluSx SINE Alu 1 296 -16 629 318 81 0 chr4 45083114 45083350 -157244997 - MIR SINE MIR 0 262 8 2618 154 41 30 chr4 45084393 45084672 -157243675 - MLT1C LTR MaLR -1 466 192 234 0 0 0 chr4 45084672 45084698 -157243649 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1913 138 7 3 chr4 45084700 45084982 -157243365 - AluSq SINE Alu -30 283 1 2618 154 41 30 chr4 45084982 45085160 -157243187 - MLT1C LTR MaLR -275 192 1 2515 169 24 14 chr4 45087803 45088217 -157240130 + MER47B DNA MER2_type 1 418 0 270 279 117 9 chr4 45088919 45089030 -157239317 + MIR SINE MIR 104 226 -36 731 166 13 76 chr4 45089349 45089506 -157238841 - BC200 scRNA scRNA -53 147 1 636 275 50 18 chr4 45091745 45091967 -157236380 + MIR SINE MIR 28 256 -6 799 200 35 0 chr4 45092269 45092439 -157235908 + MER104 DNA MER2_type 4 179 -1 22 35 0 0 chr4 45093487 45093516 -157234831 + AT_rich Low_complexity Low_complexity 1 29 0 939 230 92 18 chr4 45093606 45093988 -157234359 - L1ME4a LINE L1 0 6121 5712 21 0 0 0 chr4 45095856 45095877 -157232470 + AT_rich Low_complexity Low_complexity 1 21 0 1524 123 0 0 chr4 45096800 45096812 -157231535 - AluSq SINE Alu -20 293 282 351 0 0 0 chr4 45096812 45096851 -157231496 + (TG)n Simple_repeat Simple_repeat 1 39 0 1524 123 0 0 chr4 45096851 45097050 -157231297 - AluSq SINE Alu -30 283 82 595 178 105 40 chr4 45097363 45097413 -157230934 + MER5B DNA MER1_type 1 46 -132 1588 168 3 71 chr4 45097413 45097735 -157230612 + AluJo SINE Alu 1 300 -12 595 178 105 40 chr4 45097735 45097836 -157230511 + MER5B DNA MER1_type 46 162 -16 390 239 46 28 chr4 45097955 45098064 -157230283 - L2 LINE L2 -2 3311 3201 348 169 146 0 chr4 45098519 45098608 -157229739 - Charlie4 DNA MER1_type -16 1945 1844 1140 102 45 0 chr4 45100631 45100788 -157227559 + AluSc SINE Alu 128 291 -18 890 134 8 15 chr4 45101527 45101661 -157226686 + FLAM_C SINE Alu 1 133 0 21 36 0 0 chr4 45101661 45101689 -157226658 + AT_rich Low_complexity Low_complexity 1 28 0 2664 125 14 8 chr4 45102371 45102731 -157225616 - THE1B LTR MaLR 0 364 3 564 283 66 28 chr4 45102771 45102983 -157225364 + MIR SINE MIR 24 243 -19 744 173 154 0 chr4 45103119 45103281 -157225066 - MER5A DNA MER1_type -2 187 1 387 0 0 0 chr4 45105075 45105118 -157223229 + (CA)n Simple_repeat Simple_repeat 2 44 0 623 95 0 25 chr4 45105354 45105585 -157222762 + AluSg SINE Alu 1 303 -7 2206 119 0 0 chr4 45105770 45106065 -157222282 + AluSx SINE Alu 6 300 -12 372 346 31 12 chr4 45106520 45106682 -157221665 + MIR SINE MIR 78 242 -20 261 344 119 13 chr4 45107364 45107515 -157220832 - L2 LINE L2 0 3272 3106 397 222 19 28 chr4 45108206 45108227 -157220120 + MER103 DNA DNA 18 38 -128 2210 165 5 16 chr4 45108227 45108597 -157219750 - MER47A DNA MER2_type 0 366 1 397 222 19 28 chr4 45108597 45108683 -157219664 + MER103 DNA DNA 38 124 -42 328 216 0 34 chr4 45108754 45108842 -157219505 - Zaphod DNA AcHobo -5 4026 3942 2092 134 7 0 chr4 45110558 45110850 -157217497 + AluSx SINE Alu 1 294 -18 1887 108 15 8 chr4 45110850 45111116 -157217231 + AluSp SINE Alu 44 313 0 660 295 43 17 chr4 45111248 45111482 -157216865 - MIR SINE MIR -3 259 20 207 0 0 0 chr4 45111515 45111538 -157216809 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2074 57 4 0 chr4 45111618 45111863 -157216484 - L1PA7 LINE L1 -4 6150 5905 754 156 14 57 chr4 45115217 45115358 -157212989 + AluJb SINE Alu 157 291 -21 905 110 59 7 chr4 45115368 45115504 -157212843 + L1PA10 LINE L1 6025 6167 -1 2185 125 6 6 chr4 45116342 45116654 -157211693 - AluSx SINE Alu 0 312 1 476 273 91 7 chr4 45120008 45120151 -157208196 - MIR SINE MIR -55 207 53 647 199 81 0 chr4 45120253 45120389 -157207958 + MIR SINE MIR 33 179 -83 266 278 67 22 chr4 45122454 45122544 -157205803 - L2 LINE L2 -40 3232 3139 413 329 57 0 chr4 45122555 45122713 -157205634 - MIR3 SINE MIR -11 197 31 504 308 141 34 chr4 45123781 45124015 -157204332 + L2 LINE L2 3014 3272 0 207 298 0 0 chr4 45124016 45124063 -157204284 + MIR SINE MIR 23 69 -139 2163 109 0 50 chr4 45125142 45125463 -157202884 + AluSx SINE Alu 1 305 -7 313 274 195 40 chr4 45125635 45125861 -157202486 + MIR SINE MIR 1 261 -1 212 177 44 44 chr4 45127217 45127330 -157201017 + (TA)n Simple_repeat Simple_repeat 2 114 0 839 274 103 21 chr4 45128266 45128783 -157199564 - L1ME LINE L1 -298 5823 5265 28 61 0 0 chr4 45128870 45128919 -157199428 + AT_rich Low_complexity Low_complexity 1 49 0 364 339 42 10 chr4 45129067 45129356 -157198991 - L1ME LINE L1 -1177 4969 4672 264 119 46 184 chr4 45130151 45130260 -157198087 - MER53 DNA DNA 0 189 96 * 294 174 29 0 chr4 45130196 45130265 -157198082 + MER53 DNA DNA 36 106 -83 428 240 16 0 chr4 45130272 45130393 -157197954 - MER53 DNA DNA -65 124 2 383 286 11 0 chr4 45130606 45130697 -157197650 - MER5A DNA MER1_type -89 100 9 200 94 19 75 chr4 45131018 45131071 -157197276 + (TTTTTG)n Simple_repeat Simple_repeat 1 50 0 237 146 0 0 chr4 45132650 45132698 -157195649 + (A)n Simple_repeat Simple_repeat 1 48 0 2061 145 3 3 chr4 45134078 45134389 -157193958 - AluJb SINE Alu -1 311 1 2328 84 7 7 chr4 45134660 45134959 -157193388 - AluSq SINE Alu -14 299 1 263 216 85 111 chr4 45135349 45135502 -157192845 - MER102b DNA MER1_type -1 340 192 230 236 36 18 chr4 45136079 45136134 -157192213 - MIR SINE MIR -59 149 94 2366 143 48 21 chr4 45136376 45136797 -157191550 - MSTB1 LTR MaLR 0 432 1 21 0 0 0 chr4 45137984 45138005 -157190342 + AT_rich Low_complexity Low_complexity 1 21 0 318 259 98 0 chr4 45138073 45138185 -157190162 + L1ME4a LINE L1 5321 5443 -721 820 121 8 15 chr4 45138189 45138321 -157190026 + AluJb SINE Alu 1 131 -181 625 291 53 27 chr4 45138466 45138752 -157189595 + L1ME3A LINE L1 5257 5557 -613 5071 85 36 1 chr4 45138752 45139468 -157188879 + L1PA11 LINE L1 5434 6174 0 625 291 53 27 chr4 45139468 45139556 -157188791 + L1ME3A LINE L1 5557 5641 -529 367 294 31 31 chr4 45139657 45139820 -157188527 + L1ME3A LINE L1 5789 5951 -219 272 295 98 34 chr4 45140004 45140238 -157188109 - L1ME LINE L1 -557 5613 5365 1747 151 44 4 chr4 45140317 45140639 -157187708 - AluSx SINE Alu 0 333 1 609 284 99 3 chr4 45140785 45141147 -157187200 - L1ME LINE L1 -1176 4970 4574 335 263 143 8 chr4 45141153 45141404 -157186943 - L1ME LINE L1 -1785 4361 4077 331 262 33 33 chr4 45141400 45141583 -157186764 + L1ME4a LINE L1 5705 5887 -234 * 1881 174 0 3 chr4 45141586 45141891 -157186456 + AluJb SINE Alu 1 304 -8 347 105 18 0 chr4 45141944 45142001 -157186346 + (TA)n Simple_repeat Simple_repeat 1 58 0 933 233 11 0 chr4 45142746 45142926 -157185421 + MIR SINE MIR 20 201 -61 325 292 83 24 chr4 45143213 45143381 -157184966 + L1ME4a LINE L1 5942 6119 -2 194 31 0 62 chr4 45144464 45144496 -157183851 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1823 153 28 3 chr4 45144559 45144846 -157183501 + AluSx SINE Alu 1 294 -18 2792 92 0 4 chr4 45145493 45145902 -157182445 + L1PA8 LINE L1 5746 6151 -21 389 304 96 72 chr4 45146462 45146933 -157181414 + MLT1L LTR MaLR 107 615 0 2260 163 30 2 chr4 45147074 45147479 -157180868 - MSTB LTR MaLR 0 426 11 22 56 0 0 chr4 45147910 45147946 -157180401 + AT_rich Low_complexity Low_complexity 1 36 0 1186 127 0 50 chr4 45150047 45150268 -157178079 + MLT1C LTR MaLR 1 210 -257 1426 190 56 0 chr4 45150298 45150567 -157177780 + MLT1C LTR MaLR 184 467 0 346 304 27 18 chr4 45150805 45150917 -157177430 + MIR3 SINE MIR 92 204 -4 558 246 24 8 chr4 45151305 45151431 -157176916 - MIR SINE MIR -95 167 40 1725 180 26 7 chr4 45151436 45151742 -157176605 - AluJo SINE Alu 0 312 1 25 0 0 0 chr4 45152295 45152320 -157176027 + AT_rich Low_complexity Low_complexity 1 25 0 334 351 155 7 chr4 45152403 45152551 -157175796 - L2 LINE L2 -1 3271 3102 199 281 0 0 chr4 45152570 45152627 -157175720 + L2 LINE L2 3257 3313 0 318 276 95 9 chr4 45152640 45152756 -157175591 - L2 LINE L2 -181 3091 2966 224 393 23 17 chr4 45152882 45153055 -157175292 - L2 LINE L2 -459 2855 2682 629 247 150 68 chr4 45153240 45153732 -157174615 - MLT1H1 LTR MaLR -8 547 19 499 331 149 14 chr4 45153750 45154119 -157174228 - L2 LINE L2 -889 2425 2007 292 167 0 33 chr4 45154152 45154212 -157174135 - MLT1I LTR MaLR -6 403 346 1185 90 6 0 chr4 45154212 45154389 -157173958 + MER41B LTR ERV1 1 178 -457 866 158 30 6 chr4 45154390 45154555 -157173792 + MER41B LTR ERV1 467 635 0 215 229 0 0 chr4 45154907 45154955 -157173392 - L2 LINE L2 -1357 1957 1910 301 143 0 0 chr4 45156528 45156584 -157171763 + L1PA15 LINE L1 6110 6165 0 2160 116 30 0 chr4 45156587 45156890 -157171457 + AluSx SINE Alu 1 312 0 186 43 0 0 chr4 45157221 45157244 -157171103 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2151 94 38 7 chr4 45157789 45158076 -157170271 + AluSg SINE Alu 1 296 -14 180 0 0 0 chr4 45159210 45159230 -157169117 + (TAAAAA)n Simple_repeat Simple_repeat 5 24 0 281 250 14 0 chr4 45160523 45160595 -157167752 - MLT1K LTR MaLR -24 564 492 684 278 100 14 chr4 45161362 45161744 -157166603 - MLT1J LTR MaLR -53 458 1 264 258 117 62 chr4 45162694 45162822 -157165525 + MIR SINE MIR 112 246 -16 268 246 15 15 chr4 45163229 45163294 -157165053 + L2 LINE L2 3249 3313 0 323 335 22 75 chr4 45163922 45164200 -157164147 - L2 LINE L2 -455 2859 2597 482 217 65 16 chr4 45164920 45165104 -157163243 - MER113 DNA MER1_type? -326 195 3 234 167 71 0 chr4 45165203 45165245 -157163102 + MIR SINE MIR 128 172 -90 370 282 50 55 chr4 45165893 45166074 -157162273 + MIR SINE MIR 23 202 -60 820 260 55 28 chr4 45166803 45167057 -157161290 + MIR SINE MIR 2 262 0 1936 121 50 0 chr4 45167629 45167911 -157160436 - AluSq SINE Alu -17 296 1 660 198 102 37 chr4 45168332 45168519 -157159828 - MLT1J LTR MaLR -312 199 1 320 298 65 24 chr4 45168604 45168728 -157159619 + L1MC4a LINE L1 5796 5924 -1884 1949 158 0 16 chr4 45169292 45169632 -157158715 - AluSx SINE Alu 0 312 1 3840 108 6 2 chr4 45169632 45170142 -157158205 - L1PA15 LINE L1 -16 6149 5638 646 107 17 2 chr4 45170144 45170252 -157158095 - L1PA15 LINE L1 -579 5586 5475 190 0 0 0 chr4 45170399 45170420 -157157927 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1949 135 3 0 chr4 45170420 45170702 -157157645 - AluSq SINE Alu -30 283 1 804 152 0 0 chr4 45171201 45171326 -157157021 - L1MB7 LINE L1 -19 6165 6041 2173 129 3 0 chr4 45171377 45171687 -157156660 + AluSq SINE Alu 1 311 -2 382 380 78 0 chr4 45171775 45171980 -157156367 + MIR SINE MIR 28 248 -14 197 293 240 0 chr4 45172381 45172456 -157155891 + MIR SINE MIR 7 99 -163 328 263 11 42 chr4 45172862 45172957 -157155390 - Charlie4a DNA MER1_type -7 501 410 1680 140 31 20 chr4 45172971 45173263 -157155084 + L1MA8 LINE L1 5990 6284 -7 29 47 0 0 chr4 45173264 45173307 -157155040 + AT_rich Low_complexity Low_complexity 1 43 0 1777 186 58 13 chr4 45173323 45173716 -157154631 - Charlie4a DNA MER1_type -97 411 1 808 275 24 40 chr4 45174367 45174618 -157153729 + MIR SINE MIR 13 259 -3 315 293 140 18 chr4 45174844 45175008 -157153339 - MIR SINE MIR 0 262 79 1287 190 34 78 chr4 45176151 45176472 -157151875 - AluJo SINE Alu -5 307 1 904 131 29 0 chr4 45176946 45177083 -157151264 - MER5A DNA MER1_type -48 141 1 398 337 20 45 chr4 45177088 45177287 -157151060 + MIR SINE MIR 17 210 -52 230 160 0 40 chr4 45177727 45177802 -157150545 + A-rich Low_complexity Low_complexity 1 72 0 215 336 0 0 chr4 45178984 45179103 -157149244 + T-rich Low_complexity Low_complexity 1 119 0 210 71 0 0 chr4 45179500 45179528 -157148819 + (CCG)n Simple_repeat Simple_repeat 3 30 0 307 288 73 68 chr4 45179652 45179843 -157148504 + L1M2 LINE L1 687 878 -5971 25 51 0 0 chr4 45181694 45181733 -157146614 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr4 45183238 45183260 -157145087 + AT_rich Low_complexity Low_complexity 1 22 0 213 309 0 0 chr4 45187132 45187187 -157141160 + MIR SINE MIR 200 254 -8 216 0 0 0 chr4 45188232 45188256 -157140091 + (TC)n Simple_repeat Simple_repeat 1 24 0 391 378 38 24 chr4 45188315 45188812 -157139535 + L2 LINE L2 1396 1899 -1415 1207 255 43 23 chr4 45188856 45189158 -157139189 + MLT1I LTR MaLR 7 314 -95 381 337 20 40 chr4 45189171 45189373 -157138974 - L2 LINE L2 -219 3053 2856 183 80 0 0 chr4 45189801 45189826 -157138521 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 536 146 10 0 chr4 45191045 45191148 -157137199 + CT-rich Low_complexity Low_complexity 3 106 0 29 0 0 0 chr4 45192020 45192049 -157136298 + AT_rich Low_complexity Low_complexity 1 29 0 703 227 43 138 chr4 45192055 45192496 -157135851 - L1ME4a LINE L1 -236 5885 5487 2103 122 0 3 chr4 45192683 45192993 -157135354 - AluSq SINE Alu 0 309 1 37 0 0 0 chr4 45193126 45193163 -157135184 + AT_rich Low_complexity Low_complexity 1 37 0 1423 144 0 92 chr4 45193165 45193436 -157134911 - AluJb SINE Alu -66 246 1 1151 226 32 63 chr4 45193799 45194272 -157134075 - L1MC5 LINE L1 -51 7910 7453 2099 118 6 16 chr4 45194280 45194594 -157133753 + AluSx SINE Alu 1 311 -1 404 152 25 0 chr4 45194594 45194673 -157133674 + GA-rich Low_complexity Low_complexity 1 81 0 325 257 144 8 chr4 45194688 45194938 -157133409 - L1MC5 LINE L1 -527 7478 7260 * 1303 158 123 145 chr4 45194932 45195502 -157132845 - L1MC4a LINE L1 -632 7232 6700 413 258 114 30 chr4 45195724 45195891 -157132456 - L2 LINE L2 -202 3070 2890 * 1434 292 77 10 chr4 45195886 45196366 -157131981 + L3 LINE CR1 355 866 -711 4683 112 5 0 chr4 45196465 45197102 -157131245 + L1PA13 LINE L1 5522 6161 -2 316 272 41 124 chr4 45197286 45197455 -157130892 + L3 LINE CR1 1265 1419 -158 216 286 0 0 chr4 45197732 45197774 -157130573 + MIR SINE MIR 28 69 -139 939 252 24 19 chr4 45197802 45198012 -157130335 + MLT1H1 LTR MaLR 2 212 -343 189 0 0 0 chr4 45198028 45198049 -157130298 + (GA)n Simple_repeat Simple_repeat 2 22 0 588 214 78 58 chr4 45198086 45198240 -157130107 + MLT1G1 LTR MaLR 439 595 0 345 286 31 0 chr4 45198243 45198341 -157130006 + MIR3 SINE MIR 95 195 -13 2393 193 35 2 chr4 45198357 45198843 -157129504 - Charlie1b DNA MER1_type -21 502 1 1926 82 11 32 chr4 45200028 45200309 -157128038 + L1MA1 LINE L1 6028 6302 0 4196 197 45 85 chr4 45201121 45202058 -157126289 + L1MD2 LINE L1 5057 5926 -433 2157 108 7 19 chr4 45202058 45202365 -157125982 + AluSq SINE Alu 1 303 -10 4196 197 45 85 chr4 45202365 45202770 -157125577 + L1MD2 LINE L1 5926 6346 -13 655 303 32 0 chr4 45202981 45203136 -157125211 + MLT1I LTR MaLR 42 201 -208 311 249 167 90 chr4 45203280 45203682 -157124665 + L1ME4a LINE L1 5550 5982 -139 * 807 264 135 19 chr4 45203651 45204308 -157124039 + L1MC4a LINE L1 5171 5396 -750 311 215 141 15 chr4 45204567 45204702 -157123645 + L1ME4a LINE L1 5968 6119 -2 904 30 0 0 chr4 45205193 45205293 -157123054 + L1PA7 LINE L1 6052 6151 -3 707 255 19 0 chr4 45205359 45205516 -157122831 - U1 snRNA snRNA -3 162 3 303 305 112 15 chr4 45205598 45205727 -157122620 + MIR3 SINE MIR 14 158 -50 2001 65 40 0 chr4 45205794 45206042 -157122305 - L1PA8 LINE L1 -3 6169 5912 371 62 0 0 chr4 45206043 45206091 -157122256 + L1P LINE L1 5343 5390 -782 733 317 61 28 chr4 45206153 45206516 -157121831 - MLT1K LTR MaLR -113 475 101 213 299 45 0 chr4 45206620 45206687 -157121660 + MIR SINE MIR 172 241 -21 306 284 101 0 chr4 45206819 45206928 -157121419 + MER117 DNA MER1_type 21 140 -57 1973 121 36 0 chr4 45207046 45207327 -157121020 + AluJo SINE Alu 1 291 -21 242 222 189 33 chr4 45207398 45207488 -157120859 + L2 LINE L2 3168 3271 -1 22 35 0 0 chr4 45207613 45207642 -157120705 + AT_rich Low_complexity Low_complexity 1 29 0 526 323 124 4 chr4 45208160 45208386 -157119961 + MIR SINE MIR 10 262 0 1486 193 167 44 chr4 45209066 45209516 -157118831 + MLT1D LTR MaLR 1 505 0 324 0 0 0 chr4 45209536 45209572 -157118775 + (TG)n Simple_repeat Simple_repeat 2 37 0 422 264 37 48 chr4 45209576 45209612 -157118735 - MIR3 SINE MIR -67 141 106 1982 145 3 0 chr4 45209612 45209908 -157118439 - AluSx SINE Alu -15 297 1 422 264 37 48 chr4 45209908 45210060 -157118287 - MIR3 SINE MIR -102 106 4 524 268 97 63 chr4 45210149 45210530 -157117817 - L1MCc LINE L1 -5223 1200 807 31 58 0 0 chr4 45211824 45211876 -157116471 + AT_rich Low_complexity Low_complexity 1 52 0 304 293 72 65 chr4 45211941 45212231 -157116116 + HAL1 LINE L1 849 1140 -1367 1691 190 3 7 chr4 45212254 45212554 -157115793 + AluJb SINE Alu 1 299 -13 339 85 0 0 chr4 45212727 45212774 -157115573 + (CA)n Simple_repeat Simple_repeat 2 48 0 2258 173 45 28 chr4 45212776 45213198 -157115149 + Tigger2a DNA MER2_type 5 433 -1 1042 99 0 0 chr4 45213693 45213835 -157114512 + AluSp/q SINE Alu 160 301 -12 2031 138 0 0 chr4 45213966 45214284 -157114063 - AluSx SINE Alu 0 318 1 849 286 31 12 chr4 45214311 45214566 -157113781 - MIR SINE MIR -1 261 2 263 209 122 96 chr4 45214668 45214783 -157113564 + L2 LINE L2 2845 2962 -352 242 311 120 12 chr4 45214846 45215013 -157113334 + L2 LINE L2 3118 3302 -11 355 316 88 7 chr4 45215286 45215422 -157112925 - MIR SINE MIR -115 147 1 261 119 51 0 chr4 45215521 45215580 -157112767 - MER96B DNA MER1_type? -61 356 295 922 142 171 17 chr4 45215585 45215761 -157112586 + AluSg/x SINE Alu 89 291 -21 216 0 0 0 chr4 45215761 45215785 -157112562 + (CA)n Simple_repeat Simple_repeat 2 25 0 749 198 23 23 chr4 45215899 45216076 -157112271 - MER96B DNA MER1_type? -238 179 3 310 148 13 0 chr4 45216202 45216258 -157112089 + AluS SINE Alu 226 273 -29 2252 113 3 0 chr4 45216577 45216870 -157111477 + AluSx SINE Alu 1 294 -18 300 53 0 0 chr4 45216909 45216947 -157111400 + (TA)n Simple_repeat Simple_repeat 2 39 0 247 36 0 0 chr4 45217158 45217186 -157111161 - AluY SINE Alu -258 44 17 355 307 88 7 chr4 45221231 45221368 -157106979 - MIR SINE MIR -109 153 6 291 93 0 0 chr4 45221690 45221733 -157106614 + (GA)n Simple_repeat Simple_repeat 2 44 0 649 236 94 43 chr4 45222288 45222521 -157105826 + MIR SINE MIR 6 250 -12 26 0 0 0 chr4 45223166 45223192 -157105155 + AT_rich Low_complexity Low_complexity 1 26 0 2947 132 21 12 chr4 45223470 45223894 -157104453 - MSTA LTR MaLR 0 428 1 213 379 48 0 chr4 45224024 45224127 -157104220 - MIR SINE MIR -153 109 2 400 188 196 80 chr4 45224522 45224660 -157103687 - MIR SINE MIR -101 161 8 238 238 138 129 chr4 45224683 45224923 -157103424 + L3 LINE CR1 1303 1544 -33 209 148 19 74 chr4 45225135 45225189 -157103158 + L3 LINE CR1 1527 1577 0 1331 274 64 9 chr4 45225299 45225778 -157102569 + L2 LINE L2 2540 3039 -274 304 312 91 19 chr4 45225778 45225932 -157102415 - MER91B DNA MER1_type 0 190 26 837 207 60 56 chr4 45225957 45226223 -157102124 + L2 LINE L2 3047 3313 0 765 177 158 13 chr4 45228028 45228186 -157100161 + MER5A DNA MER1_type 9 189 0 2053 121 16 3 chr4 45231126 45231432 -157096915 - AluSx SINE Alu -2 310 1 993 164 11 11 chr4 45231605 45231782 -157096565 + FRAM SINE Alu 1 176 0 252 157 57 0 chr4 45232358 45232428 -157095919 - L1ME4a LINE L1 -1 6120 6047 1574 171 45 11 chr4 45233280 45233566 -157094781 + AluJb SINE Alu 1 296 -16 1912 204 29 74 chr4 45233569 45233634 -157094713 - MLT1F1 LTR MaLR -103 464 398 1743 192 6 9 chr4 45233634 45233951 -157094396 + L1MB3 LINE L1 5861 6176 -7 1912 204 29 74 chr4 45233951 45234371 -157093976 - MLT1F1 LTR MaLR -169 398 1 1288 243 123 41 chr4 45234371 45234768 -157093579 + L2 LINE L2 2656 3103 -210 2277 127 38 57 chr4 45234768 45234926 -157093421 + THE1B LTR MaLR 1 160 -204 2304 113 0 0 chr4 45234926 45235227 -157093120 - AluSx SINE Alu -11 301 1 2277 127 38 57 chr4 45235227 45235439 -157092908 + THE1B LTR MaLR 160 364 0 1288 243 123 41 chr4 45235439 45235662 -157092685 + L2 LINE L2 3103 3306 -7 2195 126 0 0 chr4 45236248 45236549 -157091798 + AluSx SINE Alu 6 306 -6 222 315 140 21 chr4 45236746 45236889 -157091458 + MIR SINE MIR 20 179 -83 244 197 158 13 chr4 45236949 45237025 -157091322 + MIR SINE MIR 170 256 -6 508 219 19 0 chr4 45237068 45237173 -157091174 + MER81 DNA DNA 1 107 -7 538 234 130 87 chr4 45237377 45237608 -157090739 - MIR SINE MIR -6 256 16 2038 127 34 0 chr4 45237787 45238079 -157090268 + AluSx SINE Alu 7 308 -4 283 301 62 9 chr4 45238460 45238573 -157089774 + MIR3 SINE MIR 81 199 -9 992 144 0 0 chr4 45238772 45238945 -157089402 - AluSg/x SINE Alu 0 314 142 1171 180 45 0 chr4 45240828 45241028 -157087319 + MER3 DNA MER1_type 1 209 0 806 261 28 28 chr4 45241028 45241228 -157087119 + MIR SINE MIR 15 217 -45 715 225 32 59 chr4 45241282 45241469 -157086878 + MER20 DNA MER1_type 37 218 -1 845 242 183 45 chr4 45241699 45242055 -157086292 + L2 LINE L2 2908 3312 -1 206 333 0 0 chr4 45243346 45243394 -157084953 + L2 LINE L2 3153 3200 -72 917 185 114 17 chr4 45243512 45243799 -157084548 - MER33 DNA MER1_type 0 324 50 5434 147 79 11 chr4 45243799 45244648 -157083699 - L1MC1 LINE L1 -39 6294 5358 2191 127 44 41 chr4 45244648 45245011 -157083336 - THE1B LTR MaLR 0 364 1 5434 147 79 11 chr4 45245011 45245194 -157083153 - L1MC1 LINE L1 -975 5358 5189 453 170 0 0 chr4 45245212 45245286 -157083061 - MER33 DNA MER1_type -259 65 1 1212 188 151 0 chr4 45245354 45245599 -157082748 + AluJo SINE Alu 1 282 -30 189 74 0 0 chr4 45245607 45245634 -157082713 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 432 323 7 0 chr4 45245655 45245810 -157082537 - L2 LINE L2 -1023 2291 2136 975 303 126 15 chr4 45245822 45246291 -157082056 + L2 LINE L2 2291 2811 -503 466 301 84 0 chr4 45246496 45246639 -157081708 + L2 LINE L2 3116 3270 -2 1462 173 41 114 chr4 45246882 45247276 -157081071 - MLT1A1 LTR MaLR 0 365 1 357 313 43 17 chr4 45247865 45247980 -157080367 + MIR SINE MIR 8 125 -137 1672 243 51 26 chr4 45247984 45248477 -157079870 - MLT1D LTR MaLR 0 505 1 29 47 0 0 chr4 45248492 45248535 -157079812 + AT_rich Low_complexity Low_complexity 1 43 0 652 254 48 45 chr4 45248608 45248899 -157079448 - LTR16C LTR ERVL -15 476 185 182 196 36 36 chr4 45249095 45249151 -157079196 + MIR SINE MIR 134 189 -73 233 308 31 0 chr4 45249237 45249302 -157079045 + L2 LINE L2 3201 3267 -5 333 208 0 0 chr4 45249313 45249390 -157078957 + (TGGA)n Simple_repeat Simple_repeat 4 80 0 2083 121 4 0 chr4 45249651 45249967 -157078380 - AluSq SINE Alu 0 319 3 398 238 25 0 chr4 45250923 45251003 -157077344 - L2 LINE L2 0 3313 3232 453 328 22 18 chr4 45251140 45251369 -157076978 - L2 LINE L2 -337 2977 2748 786 282 50 38 chr4 45251504 45251766 -157076581 - MLT1J LTR MaLR -246 265 1 297 350 39 0 chr4 45251819 45251922 -157076425 - L2 LINE L2 -18 3254 3148 557 253 47 7 chr4 45251923 45252073 -157076274 + MER5B DNA MER1_type 2 157 -21 281 304 40 64 chr4 45252207 45252332 -157076015 - L2 LINE L2 -219 3053 2932 471 268 151 6 chr4 45254668 45254847 -157073500 + MIR SINE MIR 48 252 -10 21 36 0 0 chr4 45255360 45255388 -157072959 + AT_rich Low_complexity Low_complexity 1 28 0 2206 117 7 0 chr4 45256801 45257100 -157071247 + AluSx SINE Alu 1 301 -11 787 267 122 63 chr4 45258062 45258538 -157069809 - MLT1J LTR MaLR -7 504 1 1118 187 47 0 chr4 45258703 45258917 -157069430 - MIR SINE MIR -3 259 36 190 258 59 86 chr4 45259364 45259550 -157068797 + L2 LINE L2 2851 3031 -241 1172 235 231 20 chr4 45259820 45260310 -157068037 + LTR50 LTR ERVL 43 635 -160 8906 105 8 40 chr4 45260319 45261298 -157067049 - HSMAR2 DNA Mariner -1 1301 293 2200 109 0 0 chr4 45261298 45261591 -157066756 + AluSg SINE Alu 1 293 -17 2330 101 0 3 chr4 45261600 45261906 -157066441 + AluSp SINE Alu 1 305 -8 8906 105 8 40 chr4 45261906 45262258 -157066089 - HSMAR2 DNA Mariner -1017 285 2 396 189 24 0 chr4 45262291 45262380 -157065967 + LTR50 LTR ERVL 434 795 0 337 340 49 28 chr4 45262381 45262525 -157065822 + L2 LINE L2 2657 2803 -511 1397 275 31 21 chr4 45262568 45262993 -157065354 + LTR16A LTR ERVL 16 444 -6 1338 269 49 39 chr4 45263000 45263136 -157065211 + HERV16 LTR ERVL 2 135 -4861 1557 131 8 13 chr4 45263136 45263373 -157064974 - MER46A DNA MER2_type 0 236 1 1338 269 49 39 chr4 45263373 45263726 -157064621 + HERV16 LTR ERVL 135 496 -4500 443 141 0 0 chr4 45313871 45313935 -157014412 - AluJ/FLAM SINE Alu -248 64 1 795 161 0 0 chr4 45315543 45315661 -157012686 - FLAM_C SINE Alu -11 122 5 426 20 0 0 chr4 45316047 45316098 -157012249 + (TG)n Simple_repeat Simple_repeat 2 52 0 23 0 0 0 chr4 45319682 45319705 -157008642 + GC_rich Low_complexity Low_complexity 1 23 0 459 214 54 18 chr4 45320164 45320276 -157008071 - MIR SINE MIR -130 132 17 1074 144 0 0 chr4 45321034 45321214 -157007133 + (TA)n Simple_repeat Simple_repeat 1 180 0 301 333 0 0 chr4 45321239 45321329 -157007018 + L1MC4 LINE L1 6614 6703 -1339 * 336 238 71 0 chr4 45321249 45321333 -157007014 - L1MC4 LINE L1 -1339 6703 6614 217 200 0 0 chr4 45321333 45321368 -157006979 + (CA)n Simple_repeat Simple_repeat 2 36 0 226 156 22 0 chr4 45322761 45322806 -157005541 + T-rich Low_complexity Low_complexity 3 48 0 303 19 38 38 chr4 45323063 45323116 -157005231 + (TTTC)n Simple_repeat Simple_repeat 2 54 0 225 0 0 0 chr4 45324957 45324982 -157003365 + (TTG)n Simple_repeat Simple_repeat 2 26 0 242 289 33 66 chr4 45328348 45328469 -156999878 - MIR SINE MIR -46 216 100 289 303 28 0 chr4 45328741 45328850 -156999497 - MIR3 SINE MIR -53 155 44 2013 92 53 4 chr4 45329119 45329400 -156998947 - AluSx SINE Alu -10 302 8 183 80 0 0 chr4 45329403 45329428 -156998919 + (A)n Simple_repeat Simple_repeat 1 25 0 236 226 69 78 chr4 45329672 45329774 -156998573 + L3 LINE CR1 1477 1577 0 290 123 18 0 chr4 45333371 45333428 -156994919 + CT-rich Low_complexity Low_complexity 2 59 0 202 100 75 0 chr4 45335709 45335749 -156992598 + A-rich Low_complexity Low_complexity 1 43 0 2258 105 10 0 chr4 45338458 45338762 -156989585 - AluSx SINE Alu -5 307 1 397 283 0 9 chr4 45339166 45339272 -156989075 - MER5B DNA MER1_type -73 105 1 305 313 60 27 chr4 45339463 45339613 -156988734 + MIR SINE MIR 45 199 -63 323 283 9 26 chr4 45339623 45339736 -156988611 - MIR SINE MIR 0 262 152 416 251 179 17 chr4 45341105 45341284 -156987063 - MIR SINE MIR -48 214 7 2185 154 36 71 chr4 45341843 45342291 -156986056 + MSTB1 LTR MaLR 1 432 0 295 351 34 27 chr4 45344277 45344425 -156983922 - MER5A DNA MER1_type -2 187 39 1903 142 0 0 chr4 45344437 45344711 -156983636 - AluJb SINE Alu -38 274 1 576 212 28 6 chr4 45345156 45345276 -156983071 + MER5A DNA MER1_type 7 113 -65 1526 168 42 28 chr4 45345772 45346058 -156982289 + AluJo SINE Alu 1 290 -22 259 246 304 23 chr4 45346082 45346253 -156982094 - MIR SINE MIR -33 229 11 914 167 155 0 chr4 45346946 45347185 -156981162 - MER63 DNA MER1_type -606 324 49 1213 208 108 46 chr4 45347199 45347550 -156980797 + MLT1B LTR MaLR 2 374 -16 5411 114 47 91 chr4 45348155 45349121 -156979226 - MER49 LTR ERV1 0 923 1 3028 118 197 6 chr4 45349433 45349965 -156978382 + MER51A LTR ERV1 1 634 0 354 309 114 30 chr4 45349971 45350233 -156978114 + L2 LINE L2 2989 3272 0 1636 150 4 11 chr4 45351666 45351971 -156976376 + AluJo SINE Alu 6 308 0 313 185 109 101 chr4 45351978 45352097 -156976250 + FLAM_A SINE Alu 1 120 -13 321 259 23 61 chr4 45352098 45352229 -156976118 - L1MC4 LINE L1 -389 7653 7528 733 238 32 0 chr4 45352261 45352446 -156975901 - L1MC4 LINE L1 -618 7424 7234 23 68 0 0 chr4 45352885 45352929 -156975418 + AT_rich Low_complexity Low_complexity 1 44 0 635 180 218 9 chr4 45352936 45353147 -156975200 - MER112 DNA MER1_type 0 256 2 606 106 279 0 chr4 45355459 45355563 -156972784 - FLAM_C SINE Alu 0 133 1 1197 107 36 6 chr4 45355938 45356106 -156972241 + AluY SINE Alu 1 173 -138 280 146 21 0 chr4 45356876 45356924 -156971423 + L2 LINE L2 3220 3268 -4 336 294 128 28 chr4 45357335 45357515 -156970832 - MIR3 SINE MIR -8 200 3 2353 94 0 0 chr4 45358633 45358931 -156969416 + AluSq SINE Alu 1 298 -15 2310 124 0 6 chr4 45361079 45361393 -156966954 + AluSx SINE Alu 1 312 0 21 0 0 0 chr4 45361752 45361773 -156966574 + AT_rich Low_complexity Low_complexity 1 21 0 2328 81 0 3 chr4 45362344 45362639 -156965708 + AluSc SINE Alu 1 294 -15 313 272 111 28 chr4 45363239 45363456 -156964891 + L1MC4a LINE L1 5639 5873 -1935 2367 113 103 10 chr4 45363791 45364181 -156964166 + MSTA LTR MaLR 2 427 -1 4765 107 15 10 chr4 45364551 45365225 -156963122 + LTR8 LTR ERV1 1 677 -14 1363 181 77 3 chr4 45365276 45365575 -156962772 + MER33 DNA MER1_type 4 324 0 2401 60 0 7 chr4 45365718 45366016 -156962331 - AluSp SINE Alu -6 307 12 676 271 26 26 chr4 45366157 45366349 -156961998 + MLT1I LTR MaLR 98 289 -120 460 243 56 0 chr4 45366547 45366654 -156961693 + L2 LINE L2 3201 3313 0 368 198 32 71 chr4 45366660 45366786 -156961561 - MER69 DNA AcHobo 0 2526 2406 2291 120 0 0 chr4 45366786 45367086 -156961261 - AluSx SINE Alu -11 301 2 1857 150 0 14 chr4 45367635 45367948 -156960399 + AluJb SINE Alu 2 310 0 284 304 11 0 chr4 45368066 45368158 -156960189 + L2 LINE L2 3175 3267 -46 2058 148 0 19 chr4 45368676 45368994 -156959353 - AluJb SINE Alu 0 312 1 1055 195 37 78 chr4 45369482 45369896 -156958451 - MLT1C LTR MaLR 0 467 1 1705 170 3 16 chr4 45369972 45370278 -156958069 + AluJb SINE Alu 1 302 -10 1681 177 40 40 chr4 45370501 45370873 -156957474 + MLT1A2 LTR MaLR 1 372 -2 686 220 249 0 chr4 45371139 45371348 -156956999 - MIR SINE MIR 0 262 2 246 62 0 0 chr4 45371465 45371497 -156956850 + (TG)n Simple_repeat Simple_repeat 2 33 0 297 265 12 0 chr4 45372104 45372187 -156956160 + (TA)n Simple_repeat Simple_repeat 2 85 0 29638 99 8 40 chr4 45372240 45377223 -156951124 - L1PA7 LINE L1 -3 6466 1325 17656 26 0 1 chr4 45377223 45380075 -156948272 + L1PA3 LINE L1 3302 6152 -3 29638 99 8 40 chr4 45380075 45381557 -156946790 - L1PA7 LINE L1 -5144 1325 75 2114 134 7 0 chr4 45381557 45381863 -156946484 + AluSq SINE Alu 1 308 -5 29638 99 8 40 chr4 45381863 45381936 -156946411 - L1PA7 LINE L1 -6394 75 1 1601 153 53 18 chr4 45381947 45382228 -156946119 - AluJb SINE Alu -21 291 1 2298 65 44 0 chr4 45382319 45382612 -156945735 - AluY SINE Alu -5 306 1 320 316 0 10 chr4 45382761 45382859 -156945488 + MIR3 SINE MIR 101 197 -11 304 149 0 0 chr4 45383316 45383363 -156944984 - Alu SINE Alu -254 48 2 595 157 0 199 chr4 45383406 45383666 -156944681 - MER69 DNA AcHobo -161 2365 2164 1872 140 11 0 chr4 45383666 45383974 -156944373 - AluSx SINE Alu 0 311 1 595 157 0 199 chr4 45383974 45383998 -156944349 - MER69 DNA AcHobo -362 2164 2137 2156 129 0 0 chr4 45384011 45384298 -156944049 - AluSx SINE Alu -25 287 1 27 92 0 0 chr4 45384301 45384377 -156943970 + AT_rich Low_complexity Low_complexity 1 76 0 2178 118 0 0 chr4 45384377 45384665 -156943682 - AluSg SINE Alu -22 288 1 296 130 14 14 chr4 45385455 45385524 -156942823 - L1M4 LINE L1 -1081 5065 4997 4431 154 23 43 chr4 45385552 45386456 -156941891 + L1MB3 LINE L1 5073 5950 -233 2286 170 10 0 chr4 45386456 45386855 -156941492 + MER57A LTR ERV1 1 403 0 4431 154 23 43 chr4 45386855 45387074 -156941273 + L1MB3 LINE L1 5950 6172 -11 1511 130 63 183 chr4 45387254 45387342 -156941005 - MER83 LTR ERV1 0 448 351 1509 95 0 11 chr4 45387342 45387532 -156940815 + AluSg/x SINE Alu 85 272 -40 1511 130 63 183 chr4 45387532 45387950 -156940397 - MER83 LTR ERV1 -97 351 3 2308 92 12 12 chr4 45387976 45388321 -156940026 + THE1C LTR MaLR 1 430 -27 5814 110 3 5 chr4 45388321 45388937 -156939410 + THE1C-int LTR MaLR 721 1337 -243 2297 168 75 21 chr4 45388937 45389420 -156938927 + LTR22 LTR ERVK 1 509 0 5814 110 3 5 chr4 45389420 45389664 -156938683 + THE1C-int LTR MaLR 1337 1580 0 2352 142 5 3 chr4 45389664 45390038 -156938309 + THE1C LTR MaLR 1 375 0 2013 162 27 0 chr4 45390039 45390367 -156937980 + MER1B DNA MER1_type 1 337 0 489 245 177 7 chr4 45390508 45390655 -156937692 + MIR SINE MIR 2 173 -89 846 243 0 5 chr4 45390655 45390844 -156937503 + LTR33 LTR ERVL 1 188 -333 880 194 12 0 chr4 45390844 45391009 -156937338 - FAM SINE Alu -7 42 1 2016 198 19 68 chr4 45391170 45391711 -156936636 + LTR9 LTR ERV1 99 612 0 2230 102 7 13 chr4 45392269 45392574 -156935773 + AluSg SINE Alu 1 303 -7 22 70 0 0 chr4 45393234 45393277 -156935070 + AT_rich Low_complexity Low_complexity 1 43 0 999 168 11 112 chr4 45393278 45393380 -156934967 - LTR37A LTR ERV1 -49 377 266 1464 167 68 48 chr4 45393380 45393673 -156934674 - AluJo SINE Alu -9 303 5 999 168 11 112 chr4 45393673 45393820 -156934527 - LTR37A LTR ERV1 -160 266 172 1692 192 28 90 chr4 45393820 45394039 -156934308 + MLT1D LTR MaLR 1 232 -273 1961 113 33 50 chr4 45394039 45394340 -156934007 + AluSx SINE Alu 1 296 -16 1692 192 28 90 chr4 45394340 45394656 -156933691 + MLT1D LTR MaLR 232 503 -2 999 168 11 112 chr4 45394656 45394762 -156933585 - LTR37A LTR ERV1 -254 172 57 234 0 0 0 chr4 45395281 45395307 -156933040 + (T)n Simple_repeat Simple_repeat 1 26 0 846 151 0 37 chr4 45395374 45395631 -156932716 - MER50 LTR ERV1 -22 712 407 1353 128 8 44 chr4 45395632 45395881 -156932466 - MER50 LTR ERV1 -492 242 3 464 317 61 29 chr4 45395920 45396330 -156932017 + MLT1K LTR MaLR 141 588 0 2363 107 3 0 chr4 45396403 45396713 -156931634 + AluSp SINE Alu 1 311 -2 1370 140 92 12 chr4 45397640 45397890 -156930457 + MER51A LTR ERV1 1 270 -364 633 196 57 6 chr4 45397919 45398077 -156930270 + MLT1B LTR MaLR 8 173 -217 1403 126 108 71 chr4 45398097 45398422 -156929925 + MER51A LTR ERV1 298 634 0 298 208 101 84 chr4 45398469 45398540 -156929807 + L1ME LINE L1 5274 5342 -820 2037 134 0 3 chr4 45398540 45398831 -156929516 + AluSg SINE Alu 1 290 -20 298 208 101 84 chr4 45398831 45398937 -156929410 + L1ME LINE L1 5342 5454 -708 22 0 0 0 chr4 45399681 45399703 -156928644 + AT_rich Low_complexity Low_complexity 1 22 0 198 71 0 0 chr4 45399948 45399976 -156928371 + (TA)n Simple_repeat Simple_repeat 1 28 0 191 320 210 27 chr4 45404608 45404942 -156923405 - L2 LINE L2 -339 2975 2581 244 270 262 1 chr4 45405105 45405248 -156923099 + MIR SINE MIR 38 215 -47 380 251 134 21 chr4 45405918 45406105 -156922242 - MER3 DNA MER1_type 0 209 2 221 253 32 32 chr4 45407361 45407456 -156920891 - L2 LINE L2 -448 2866 2772 26 0 0 0 chr4 45407643 45407669 -156920678 + AT_rich Low_complexity Low_complexity 1 26 0 33 0 0 0 chr4 45407755 45407788 -156920559 + AT_rich Low_complexity Low_complexity 1 33 0 879 152 26 0 chr4 45407978 45408129 -156920218 - Tigger1 DNA MER2_type -1 2417 2263 2952 165 75 21 chr4 45408131 45408742 -156919605 - Tigger1 DNA MER2_type -1751 667 24 592 215 11 48 chr4 45410662 45410700 -156917647 - L1MD3 LINE L1 -30 7965 7927 2101 82 0 78 chr4 45410700 45411031 -156917316 - AluSc SINE Alu -4 305 1 592 215 11 48 chr4 45411031 45411178 -156917169 - L1MD3 LINE L1 -68 7927 7787 2115 90 21 0 chr4 45412736 45413038 -156915309 - AluSq SINE Alu 0 308 1 2276 107 0 28 chr4 45413431 45413748 -156914599 - AluSx SINE Alu -4 308 1 24 32 0 0 chr4 45414729 45414760 -156913587 + AT_rich Low_complexity Low_complexity 1 31 0 249 279 86 36 chr4 45416155 45416377 -156911970 - L1MC5 LINE L1 -51 7910 7678 22 35 0 0 chr4 45416912 45416941 -156911406 + AT_rich Low_complexity Low_complexity 1 29 0 758 146 15 31 chr4 45417435 45417565 -156910782 + FLAM_A SINE Alu 6 133 -9 2779 10 0 0 chr4 45418202 45418507 -156909840 + AluYa5 SINE Alu 1 305 -6 2333 86 23 0 chr4 45418738 45419040 -156909307 - AluSc SINE Alu 0 309 1 28 29 0 0 chr4 45419434 45419469 -156908878 + AT_rich Low_complexity Low_complexity 1 35 0 423 66 0 0 chr4 45419634 45419695 -156908652 - AluSc SINE Alu -10 299 239 1150 82 0 0 chr4 45419695 45419841 -156908506 - AluY SINE Alu -165 146 1 200 261 3 0 chr4 45420191 45420247 -156908100 + MIR SINE MIR 93 148 -62 502 82 35 0 chr4 45420512 45420597 -156907750 - L1PB1 LINE L1 0 6151 6064 5829 128 73 23 chr4 45420960 45421598 -156906749 + Tigger3b DNA MER2_type 17 622 -2406 1537 183 11 21 chr4 45421598 45421882 -156906465 + AluJo SINE Alu 1 281 -31 5829 128 73 23 chr4 45421882 45422399 -156905948 + Tigger3b DNA MER2_type 622 1230 -1 333 214 176 23 chr4 45422462 45422593 -156905754 + MIR SINE MIR 111 261 -1 841 108 0 64 chr4 45422608 45422765 -156905582 + THE1C LTR MaLR 1 147 -228 323 137 0 0 chr4 45422763 45422814 -156905533 + MSTA LTR MaLR 378 428 0 * 10341 102 30 33 chr4 45422814 45424399 -156903948 + THE1C-int LTR MaLR 1 1580 0 2513 110 62 6 chr4 45424399 45424754 -156903593 + THE1C LTR MaLR 1 375 0 309 213 38 0 chr4 45425032 45425112 -156903235 + MIR SINE MIR 72 154 -108 1659 161 3 24 chr4 45425259 45425557 -156902790 + AluJb SINE Alu 13 304 -8 432 0 0 0 chr4 45425842 45425890 -156902457 + (TG)n Simple_repeat Simple_repeat 1 48 0 1235 137 105 82 chr4 45425894 45426209 -156902138 - MER33 DNA MER1_type -1 323 2 1559 194 32 60 chr4 45426498 45426775 -156901572 - MLT1B LTR MaLR 0 390 107 2246 138 30 22 chr4 45426775 45427136 -156901211 + THE1B LTR MaLR 1 364 0 12598 83 10 2 chr4 45427136 45428705 -156899642 + THE1B-int LTR MaLR 1 1580 0 2383 112 30 33 chr4 45428705 45429070 -156899277 + THE1B LTR MaLR 1 364 0 1559 194 32 60 chr4 45429070 45429191 -156899156 - MLT1B LTR MaLR -280 110 1 1233 254 95 58 chr4 45429645 45429706 -156898641 + L2 LINE L2 2487 2544 -769 659 225 8 0 chr4 45429706 45429826 -156898521 + FLAM_A SINE Alu 2 122 -11 194 0 39 0 chr4 45429829 45429855 -156898492 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1233 254 95 58 chr4 45429855 45430580 -156897767 + L2 LINE L2 2545 3306 -7 612 300 171 28 chr4 45430585 45431042 -156897305 - LTR67 LTR ERVL -29 528 7 215 227 0 0 chr4 45431549 45431593 -156896754 + T-rich Low_complexity Low_complexity 3 46 0 860 155 174 0 chr4 45432824 45432985 -156895362 - MER20 DNA MER1_type -30 189 1 2051 79 0 56 chr4 45433317 45433378 -156894969 + L1MA1 LINE L1 6017 6080 -222 2114 129 0 0 chr4 45433378 45433688 -156894659 + AluSg SINE Alu 1 310 0 2051 79 0 56 chr4 45433688 45433929 -156894418 + L1MA1 LINE L1 6080 6302 0 216 318 47 65 chr4 45434105 45434212 -156894135 - L2 LINE L2 -35 3237 3133 894 130 45 162 chr4 45435093 45435294 -156893053 - AluJb SINE Alu -3 309 141 2217 103 0 3 chr4 45435294 45435605 -156892742 - AluY SINE Alu 0 311 2 894 130 45 162 chr4 45435605 45435650 -156892697 - AluJb SINE Alu -171 141 92 2091 77 4 7 chr4 45435953 45436226 -156892121 + AluY SINE Alu 36 307 -4 1529 188 31 0 chr4 45436230 45436522 -156891825 + AluJo SINE Alu 1 301 -11 22 0 0 0 chr4 45438230 45438252 -156890095 + AT_rich Low_complexity Low_complexity 1 22 0 800 252 126 60 chr4 45438781 45439234 -156889113 + L1ME3 LINE L1 5678 6160 -2 383 291 42 36 chr4 45439244 45439409 -156888938 - L2 LINE L2 -680 2634 2469 769 33 0 0 chr4 45439416 45439506 -156888841 - AluY SINE Alu -9 302 213 310 276 207 5 chr4 45439521 45439738 -156888609 - L2 LINE L2 -865 2449 2189 1992 205 124 51 chr4 45440206 45440875 -156887472 + L1ME3A LINE L1 5292 6009 -161 2233 183 66 5 chr4 45440902 45441324 -156887023 - LTR32 LTR ERVL 0 471 24 315 198 115 0 chr4 45441336 45441432 -156886915 + L1ME3A LINE L1 6062 6168 -2 257 300 11 22 chr4 45442002 45442092 -156886255 + MIR SINE MIR 28 116 -92 676 164 90 16 chr4 45442294 45442416 -156885931 - AluJb SINE Alu -181 131 1 1335 188 0 0 chr4 45442424 45442648 -156885699 - AluSg/x SINE Alu -4 308 85 207 329 13 0 chr4 45443432 45443508 -156884839 + L2 LINE L2 3158 3234 -79 633 252 143 23 chr4 45444622 45444888 -156883459 - L2 LINE L2 -40 3273 2976 731 162 34 0 chr4 45446620 45446737 -156881610 + FLAM_A SINE Alu 1 121 -12 1690 145 28 47 chr4 45447034 45447352 -156880995 + AluJb SINE Alu 1 312 0 21 0 0 0 chr4 45447661 45447682 -156880665 + AT_rich Low_complexity Low_complexity 1 21 0 959 140 77 166 chr4 45448026 45448376 -156879971 - MER33 DNA MER1_type -5 319 1 280 254 127 20 chr4 45448385 45448646 -156879701 + L1ME4a LINE L1 5257 5550 -571 246 218 147 121 chr4 45448648 45448857 -156879490 + L1ME4a LINE L1 5607 5828 -293 2390 87 7 0 chr4 45448857 45449156 -156879191 + AluSq SINE Alu 1 301 -12 246 218 147 121 chr4 45449156 45449253 -156879094 + L1ME4a LINE L1 5828 5921 -200 1016 94 0 0 chr4 45449672 45449799 -156878548 + AluSq SINE Alu 82 208 -105 2246 87 0 27 chr4 45449960 45450259 -156878088 + AluSq SINE Alu 1 291 -22 188 277 0 0 chr4 45450329 45450376 -156877971 + MIR SINE MIR 134 180 -82 402 264 15 94 chr4 45450481 45450682 -156877665 - L2 LINE L2 -197 3116 2932 1923 153 0 0 chr4 45450707 45450994 -156877353 - AluJb SINE Alu -25 287 1 751 136 8 0 chr4 45451072 45451190 -156877157 - AluSp/q SINE Alu -4 309 191 234 0 0 0 chr4 45451844 45451870 -156876477 + (A)n Simple_repeat Simple_repeat 1 26 0 440 263 54 59 chr4 45451937 45451968 -156876379 - MIR SINE MIR -29 233 203 2366 67 0 7 chr4 45451968 45452266 -156876081 - AluY SINE Alu -12 299 4 440 263 54 59 chr4 45452266 45452420 -156875927 - MIR SINE MIR -59 203 49 2386 76 3 3 chr4 45452644 45452945 -156875402 - AluSc SINE Alu -8 301 1 1981 118 11 0 chr4 45452993 45453309 -156875038 - AluSg SINE Alu 0 319 1 2327 86 3 0 chr4 45453479 45453769 -156874578 + AluSg SINE Alu 1 291 -19 1593 171 84 19 chr4 45453780 45454101 -156874246 + MER2 DNA MER2_type 2 343 -1 208 210 16 16 chr4 45454253 45454315 -156874032 + (TA)n Simple_repeat Simple_repeat 2 63 0 1095 148 61 5 chr4 45454443 45454639 -156873708 - MER3 DNA MER1_type -1 208 2 2208 119 0 0 chr4 45455158 45455469 -156872878 + AluY SINE Alu 1 311 0 24 77 0 0 chr4 45455501 45455553 -156872794 + AT_rich Low_complexity Low_complexity 1 52 0 1550 216 165 66 chr4 45456239 45456613 -156871734 + L2 LINE L2 1671 2129 -1185 2092 106 40 13 chr4 45456613 45456914 -156871433 - AluSx SINE Alu -3 309 1 1550 216 165 66 chr4 45456914 45457144 -156871203 + L2 LINE L2 2129 2335 -979 281 296 0 0 chr4 45457213 45457230 -156871117 + L1ME4a LINE L1 5574 5590 -531 608 214 30 30 chr4 45457230 45457361 -156870986 + FLAM_C SINE Alu 3 133 0 281 296 0 0 chr4 45457361 45457424 -156870923 + L1ME4a LINE L1 5589 5654 -467 1677 192 0 23 chr4 45457515 45457822 -156870525 + AluJb SINE Alu 1 300 -12 344 211 258 0 chr4 45457990 45458118 -156870229 + L1ME4a LINE L1 5955 6115 -6 2156 98 0 0 chr4 45458144 45458420 -156869927 + AluSx SINE Alu 1 276 -36 315 0 0 0 chr4 45458426 45458461 -156869886 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 203 173 96 58 chr4 45458871 45458923 -156869424 - L2 LINE L2 -3 3310 3257 6169 133 47 17 chr4 45459925 45461206 -156867141 - L1MA6 LINE L1 0 6300 4977 2604 159 103 0 chr4 45461206 45461670 -156866677 - MER44D DNA MER2_type 0 705 194 996 184 108 1 chr4 45461670 45461826 -156866521 - MER44D DNA MER2_type -2243 344 206 6197 51 6 48 chr4 45461826 45462636 -156865711 + L1PA8 LINE L1 5395 6170 -2 996 184 108 1 chr4 45462636 45462743 -156865604 - MER44D DNA MER2_type -2381 206 21 2410 94 7 0 chr4 45462745 45463053 -156865294 + AluSg SINE Alu 1 310 0 1352 104 136 14 chr4 45463094 45463314 -156865033 - L1MA6 LINE L1 -1168 4978 4732 667 275 82 38 chr4 45463386 45463753 -156864594 + MARNA DNA Mariner 197 579 -7 402 248 195 0 chr4 45463970 45464083 -156864264 + MER5A DNA MER1_type 52 186 -3 797 244 92 30 chr4 45464266 45464419 -156863928 + L1MEc LINE L1 1066 1208 -5188 1718 185 201 19 chr4 45464419 45464846 -156863501 - MLT1D LTR MaLR 0 505 1 797 244 92 30 chr4 45464846 45465028 -156863319 + L1MEc LINE L1 1208 1422 -4974 1800 177 7 0 chr4 45465267 45465549 -156862798 + AluJo SINE Alu 3 286 -26 21 0 0 0 chr4 45465731 45465752 -156862595 + AT_rich Low_complexity Low_complexity 1 21 0 1530 201 52 41 chr4 45465952 45466120 -156862227 - MER7A DNA MER2_type -2692 346 181 1325 93 111 46 chr4 45466120 45466254 -156862093 - MER30 DNA MER1_type 0 230 75 2154 75 61 7 chr4 45466254 45466549 -156861798 - AluY SINE Alu 0 311 1 1325 93 111 46 chr4 45466549 45466630 -156861717 - MER30 DNA MER1_type -155 75 1 1530 201 52 41 chr4 45466630 45466804 -156861543 - MER7A DNA MER2_type -2857 181 2 1623 169 10 29 chr4 45466816 45467130 -156861217 - AluJo SINE Alu -4 308 1 650 229 59 0 chr4 45467651 45467769 -156860578 - FLAM_C SINE Alu -8 125 1 242 256 44 22 chr4 45467885 45467975 -156860372 + L2 LINE L2 3222 3313 0 3472 208 132 9 chr4 45468071 45469544 -156858803 - L1MB7 LINE L1 -237 5947 4268 1889 153 0 19 chr4 45469544 45469857 -156858490 - AluJb SINE Alu -5 307 1 3472 208 132 9 chr4 45469857 45469888 -156858459 - L1MB7 LINE L1 -1916 4268 4242 1931 138 45 3 chr4 45470047 45470338 -156858009 + AluJb SINE Alu 3 305 -7 510 194 48 8 chr4 45472260 45472384 -156855963 + MIR SINE MIR 121 249 -13 250 287 28 19 chr4 45479069 45479177 -156849170 + MER5A DNA MER1_type 81 189 0 264 278 113 50 chr4 45481488 45481617 -156846730 + MIR SINE MIR 31 164 -44 400 262 48 8 chr4 45482379 45482505 -156845842 + L2 LINE L2 3181 3311 -2 4774 193 23 62 chr4 45483492 45484769 -156843578 - L1P LINE L1 -4740 1406 180 722 284 63 35 chr4 45487091 45487485 -156840862 + L1ME3A LINE L1 5359 5763 -399 222 37 0 0 chr4 45487486 45487513 -156840834 + (TAGA)n Simple_repeat Simple_repeat 2 28 0 457 252 61 0 chr4 45487564 45487679 -156840668 - MIR SINE MIR 0 262 141 338 276 52 22 chr4 45487680 45487814 -156840533 + L1ME3A LINE L1 5814 5951 -219 627 222 66 12 chr4 45488092 45488259 -156840088 - MIR SINE MIR -11 251 76 259 273 91 36 chr4 45488272 45488382 -156839965 - MIR SINE MIR -133 129 14 2001 138 3 6 chr4 45489022 45489333 -156839014 - AluJb SINE Alu -2 310 1 1729 104 112 22 chr4 45489343 45489612 -156838735 - AluSg SINE Alu -11 299 7 2070 151 21 44 chr4 45490775 45491089 -156837258 + MER6 DNA MER2_type 443 746 -119 2299 87 3 7 chr4 45491089 45491389 -156836958 - AluSp SINE Alu -14 299 1 2070 151 21 44 chr4 45491389 45491504 -156836843 + MER6 DNA MER2_type 746 862 -3 23 0 0 0 chr4 45492162 45492185 -156836162 + AT_rich Low_complexity Low_complexity 1 23 0 32 26 0 0 chr4 45493850 45493889 -156834458 + AT_rich Low_complexity Low_complexity 1 39 0 1008 173 15 30 chr4 45495086 45495283 -156833064 + AluJb SINE Alu 96 289 -23 2176 119 0 0 chr4 45495290 45495614 -156832733 + AluSx SINE Alu 5 312 0 561 214 174 15 chr4 45496071 45496272 -156832075 - L1ME4a LINE L1 -199 5922 5690 2060 129 3 7 chr4 45496994 45497296 -156831051 - AluSg SINE Alu -8 302 2 2686 220 67 66 chr4 45497512 45498636 -156829711 + L1MC5 LINE L1 6805 7929 -32 32 26 0 0 chr4 45499937 45499976 -156828371 + AT_rich Low_complexity Low_complexity 1 39 0 794 260 159 45 chr4 45500342 45500813 -156827534 - L1MEd LINE L1 -2535 3680 3264 3986 117 46 9 chr4 45500813 45501463 -156826884 - L1PA16 LINE L1 -10 6156 5483 794 260 159 45 chr4 45501463 45502101 -156826246 - L1MEd LINE L1 -2951 3264 2444 285 231 172 18 chr4 45502170 45502339 -156826008 - L1MEd LINE L1 -3953 2262 2108 1049 275 70 72 chr4 45502658 45503183 -156825164 - L1MEd LINE L1 -953 1623 1099 1861 149 27 7 chr4 45503183 45503478 -156824869 - AluJo SINE Alu 0 312 12 1049 275 70 72 chr4 45503478 45503957 -156824390 - L1MEd LINE L1 -1477 1099 526 219 283 0 61 chr4 45504350 45504449 -156823898 - L2 LINE L2 0 3313 3221 2095 144 9 6 chr4 45504462 45504803 -156823544 - MER2 DNA MER2_type 0 344 3 2061 147 3 0 chr4 45504941 45505240 -156823107 + AluJb SINE Alu 1 300 -12 2210 87 0 20 chr4 45506005 45506303 -156822044 + AluY SINE Alu 1 292 -19 879 310 65 59 chr4 45506307 45506968 -156821379 + L2 LINE L2 2557 3227 -86 351 253 158 37 chr4 45507015 45507256 -156821091 - L2 LINE L2 -1052 2262 1993 25 31 0 0 chr4 45508549 45508581 -156819766 + AT_rich Low_complexity Low_complexity 1 32 0 1779 139 7 15 chr4 45508740 45509041 -156819306 + AluJb SINE Alu 12 310 0 1723 149 94 23 chr4 45509613 45509963 -156818384 - THE1C LTR MaLR 0 375 1 258 231 83 19 chr4 45510561 45510669 -156817678 + L1MEd LINE L1 1143 1257 -4862 1664 96 73 0 chr4 45511008 45511269 -156817078 - L1MA1 LINE L1 -4 6298 6019 1675 185 11 3 chr4 45511537 45511824 -156816523 + AluJo SINE Alu 3 291 -21 3048 149 27 37 chr4 45511942 45512929 -156815418 + L1MA3 LINE L1 4688 5662 -643 1322 77 0 12 chr4 45512929 45513098 -156815249 + AluSc SINE Alu 119 285 -24 4094 108 25 6 chr4 45513098 45513739 -156814608 + L1MA3 LINE L1 5652 6304 -1 23 54 0 0 chr4 45513766 45513803 -156814544 + AT_rich Low_complexity Low_complexity 1 37 0 349 281 91 8 chr4 45514455 45514576 -156813771 + MIR SINE MIR 2 132 -130 648 216 66 12 chr4 45514586 45514753 -156813594 + MIR SINE MIR 76 251 -11 350 269 52 22 chr4 45515031 45515165 -156813182 - L1ME3A LINE L1 -219 5951 5814 457 252 61 0 chr4 45515166 45515281 -156813066 + MIR SINE MIR 141 262 0 315 0 0 0 chr4 45515332 45515367 -156812980 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 996 254 90 62 chr4 45515368 45516226 -156812121 - L1ME3A LINE L1 -399 5763 4879 737 290 102 11 chr4 45516211 45516583 -156811764 - L1ME3A LINE L1 -1997 4149 3744 * 473 317 0 19 chr4 45517176 45517337 -156811010 + MIR SINE MIR 15 172 -90 207 171 0 0 chr4 45517392 45517427 -156810920 + (CAT)n Simple_repeat Simple_repeat 1 35 0 33 0 0 0 chr4 45517462 45517495 -156810852 + AT_rich Low_complexity Low_complexity 1 33 0 385 140 70 53 chr4 45518111 45518225 -156810122 + MER112 DNA MER1_type 2 117 -143 1754 109 8 23 chr4 45518317 45518596 -156809751 - AluSx SINE Alu 0 313 39 185 359 39 13 chr4 45519824 45519902 -156808445 - MIR SINE MIR -103 105 26 2001 138 3 6 chr4 45520274 45520585 -156807762 - AluJb SINE Alu -2 310 1 1801 97 112 15 chr4 45520595 45520862 -156807485 - AluSg SINE Alu -11 299 7 1839 164 35 24 chr4 45522059 45522430 -156805917 - THE1C LTR MaLR 0 375 1 230 395 0 0 chr4 45522467 45522553 -156805794 - L2 LINE L2 0 3272 3187 266 179 0 0 chr4 45522560 45522599 -156805748 + AluSp SINE Alu 136 174 -129 648 73 0 0 chr4 45522600 45522682 -156805665 + FLAM_A SINE Alu 20 101 -41 526 310 56 29 chr4 45522701 45523208 -156805139 - L1MC4a LINE L1 -375 5746 5355 785 232 36 23 chr4 45523370 45523590 -156804757 - L1MC5 LINE L1 -36 7925 7703 2185 97 41 0 chr4 45524017 45524307 -156804040 - AluY SINE Alu -8 303 2 1119 173 0 0 chr4 45524316 45524484 -156803863 - FAM SINE Alu -7 168 1 7023 179 69 27 chr4 45525445 45526466 -156801881 + Cheshire DNA MER1_type 4 980 -1440 208 0 0 0 chr4 45526466 45526489 -156801858 + (TTTTA)n Simple_repeat Simple_repeat 2 180 0 2123 106 0 11 chr4 45526489 45526772 -156801575 - AluSc SINE Alu -29 280 1 7023 179 69 27 chr4 45526772 45527430 -156800917 + Cheshire DNA MER1_type 979 1750 -670 3058 160 50 27 chr4 45529640 45530245 -156798102 + Cheshire DNA MER1_type 1766 2388 -32 2435 122 62 8 chr4 45530245 45530647 -156797700 - MSTA LTR MaLR -4 424 1 3058 160 50 27 chr4 45530647 45530678 -156797669 + Cheshire DNA MER1_type 2388 2417 -3 683 267 52 0 chr4 45531060 45531251 -156797096 - L1MC4 LINE L1 -1046 6996 6796 233 292 105 6 chr4 45531476 45531647 -156796700 - L1MC4a LINE L1 -1571 6237 6050 811 154 0 15 chr4 45531710 45531846 -156796501 + AluJo SINE Alu 1 134 -178 23 0 0 0 chr4 45531846 45531869 -156796478 + AT_rich Low_complexity Low_complexity 1 23 0 484 228 137 43 chr4 45531910 45531938 -156796409 - L1MC4a LINE L1 -1896 5912 5888 2286 93 0 0 chr4 45531938 45532228 -156796119 - AluY SINE Alu -21 290 1 484 228 137 43 chr4 45532228 45532410 -156795937 - L1MC4a LINE L1 -1920 5888 5682 4975 137 14 22 chr4 45532587 45533457 -156794890 - L1MB2 LINE L1 -2 6169 5307 2284 106 7 0 chr4 45533820 45534122 -156794225 - AluSq SINE Alu -9 304 1 887 281 95 61 chr4 45534249 45534691 -156793656 + L2 LINE L2 1050 1506 -1808 355 266 31 23 chr4 45534726 45534854 -156793493 + L2 LINE L2 1803 1931 -1383 243 0 0 0 chr4 45535576 45535603 -156792744 + (T)n Simple_repeat Simple_repeat 1 27 0 1676 131 69 14 chr4 45536106 45536401 -156791946 - AluSq SINE Alu 0 313 1 2283 99 0 0 chr4 45537796 45538089 -156790258 - AluSc SINE Alu -16 293 1 277 250 106 50 chr4 45538417 45538577 -156789770 - L2 LINE L2 -847 2467 2299 587 276 49 66 chr4 45538705 45538891 -156789456 - L2 LINE L2 -1028 2286 2098 2026 69 34 4 chr4 45538891 45539153 -156789194 + AluY SINE Alu 37 306 -5 587 276 49 66 chr4 45539153 45539223 -156789124 - L2 LINE L2 -1216 2098 2033 2184 121 25 25 chr4 45539223 45539587 -156788760 - THE1B LTR MaLR 0 364 1 587 276 49 66 chr4 45539587 45539615 -156788732 - L2 LINE L2 -1281 2033 2006 1167 75 0 7 chr4 45539618 45539765 -156788582 - AluSc SINE Alu -14 295 150 1483 171 38 48 chr4 45539782 45540075 -156788272 + AluJo SINE Alu 4 293 -19 31299 109 12 61 chr4 45540085 45546567 -156781780 + L1PA7 LINE L1 1 6154 0 181 303 119 9 chr4 45546574 45546683 -156781664 - L2 LINE L2 -1311 2003 1883 187 206 0 0 chr4 45546774 45546808 -156781539 + MIR SINE MIR 121 154 -108 1711 185 3 13 chr4 45547280 45547594 -156780753 - AluJo SINE Alu -1 311 1 283 210 49 0 chr4 45548890 45548971 -156779376 + L1MC4a LINE L1 5813 5897 -1911 2062 303 93 23 chr4 45548982 45550095 -156778252 + L1ME2 LINE L1 37 1227 -5169 647 255 50 66 chr4 45550098 45550400 -156777947 + L1ME2 LINE L1 3615 3911 -2304 2972 212 75 37 chr4 45550406 45551737 -156776610 + L1ME2 LINE L1 4365 5767 -464 2176 97 13 23 chr4 45551737 45552047 -156776300 + AluSq SINE Alu 1 307 -6 2972 212 75 37 chr4 45552047 45552216 -156776131 + L1ME2 LINE L1 5767 5928 -303 539 217 37 63 chr4 45552256 45552395 -156775952 + L1ME2 LINE L1 6040 6174 -59 2040 125 10 10 chr4 45552395 45552698 -156775649 + AluSx SINE Alu 1 303 -9 539 217 37 63 chr4 45552698 45552747 -156775600 + L1ME2 LINE L1 6174 6223 -10 623 181 56 105 chr4 45552763 45552816 -156775531 + L1MC5 LINE L1 7608 7662 -299 2441 65 0 36 chr4 45552816 45553124 -156775223 - AluY SINE Alu -14 297 1 623 181 56 105 chr4 45553124 45553336 -156775011 + L1MC5 LINE L1 7662 7860 -101 964 77 0 0 chr4 45553365 45553482 -156774865 + AluSq/x SINE Alu 1 117 -196 24 0 0 0 chr4 45553577 45553601 -156774746 + AT_rich Low_complexity Low_complexity 1 24 0 1504 103 0 0 chr4 45553703 45553921 -156774426 - AluY SINE Alu 0 307 90 195 162 0 0 chr4 45554537 45554574 -156773773 + (TA)n Simple_repeat Simple_repeat 1 37 0 2023 119 122 15 chr4 45554610 45554938 -156773409 - THE1B LTR MaLR 0 364 2 11094 93 6 37 chr4 45554941 45556147 -156772200 - THE1B-int LTR MaLR -2 1578 436 2447 84 0 0 chr4 45556147 45556445 -156771902 + AluSc SINE Alu 1 298 -11 11094 93 6 37 chr4 45556445 45556868 -156771479 - THE1B-int LTR MaLR -1144 436 1 2092 123 85 18 chr4 45556868 45557209 -156771138 - THE1B LTR MaLR 0 364 1 227 293 13 0 chr4 45557763 45557838 -156770509 + GA-rich Low_complexity Low_complexity 1 76 0 316 252 93 81 chr4 45558066 45558475 -156769872 - L1MC4a LINE L1 -171 5950 5537 1242 146 25 5 chr4 45559490 45559689 -156768658 + MER3 DNA MER1_type 2 204 -5 2375 81 0 7 chr4 45559940 45560237 -156768110 + AluSp SINE Alu 1 295 -18 2321 91 10 0 chr4 45560238 45560535 -156767812 + AluSp SINE Alu 2 301 -12 1292 187 19 3 chr4 45563862 45564177 -156764170 + MER6 DNA MER2_type 221 628 -237 219 231 90 82 chr4 45565765 45565899 -156762448 + MIR SINE MIR 73 207 -55 2629 160 21 21 chr4 45565917 45566571 -156761776 + MER6 DNA MER2_type 5 749 -116 2313 83 3 7 chr4 45566571 45566871 -156761476 - AluSp SINE Alu -14 299 1 2629 160 21 21 chr4 45566871 45566986 -156761361 + MER6 DNA MER2_type 749 862 -3 21 0 0 0 chr4 45567738 45567759 -156760588 + AT_rich Low_complexity Low_complexity 1 21 0 870 192 39 0 chr4 45568137 45568293 -156760054 - MER5A DNA MER1_type -25 164 3 608 190 9 0 chr4 45568295 45568411 -156759936 + MER105 DNA DNA 46 162 -42 23 0 0 0 chr4 45569408 45569431 -156758916 + AT_rich Low_complexity Low_complexity 1 23 0 970 169 23 23 chr4 45569845 45570017 -156758330 + FAM SINE Alu 3 174 -1 3208 218 84 7 chr4 45570083 45571132 -156757215 - L1M4 LINE L1 -2448 3698 2569 1785 84 0 30 chr4 45571133 45571370 -156756977 - AluSq SINE Alu -13 300 71 690 61 79 61 chr4 45571370 45571484 -156756863 - AluSq/x SINE Alu -196 116 1 339 264 47 8 chr4 45571488 45571617 -156756730 - L1M4 LINE L1 -3574 2572 2439 1220 241 147 19 chr4 45571772 45572236 -156756111 - MLT1F LTR MaLR 0 542 20 336 287 33 47 chr4 45572859 45573009 -156755338 + MIR3 SINE MIR 3 150 -58 277 237 61 53 chr4 45573031 45573145 -156755202 - MIR SINE MIR -12 250 136 288 0 0 0 chr4 45573340 45573372 -156754975 + (TA)n Simple_repeat Simple_repeat 2 33 0 1210 183 0 61 chr4 45573372 45573683 -156754664 - AluSx SINE Alu -2 310 19 1514 178 4 4 chr4 45574343 45574607 -156753740 - AluSx SINE Alu -47 265 2 324 310 61 33 chr4 45575206 45575419 -156752928 - MIR SINE MIR -25 237 19 573 292 89 51 chr4 45575698 45575916 -156752431 - L1ME3A LINE L1 -223 5947 5739 2500 65 0 3 chr4 45575916 45576225 -156752122 + AluSc SINE Alu 1 308 -1 573 292 89 51 chr4 45576225 45576479 -156751868 - L1ME3A LINE L1 -431 5739 5456 700 291 82 44 chr4 45577230 45577448 -156750899 - L1ME3A LINE L1 -223 5947 5739 2500 65 0 3 chr4 45577448 45577757 -156750590 + AluSc SINE Alu 1 308 -1 700 291 82 44 chr4 45577757 45578040 -156750307 - L1ME3A LINE L1 -431 5739 5427 1697 97 0 0 chr4 45578188 45578404 -156749943 - AluSg/x SINE Alu -24 285 70 23 33 0 0 chr4 45578505 45578535 -156749812 + AT_rich Low_complexity Low_complexity 1 30 0 290 273 106 13 chr4 45578540 45578767 -156749580 - L1ME3A LINE L1 -1014 5132 4885 201 279 249 48 chr4 45579141 45579306 -156749041 - MIR SINE MIR -14 248 51 1450 178 127 29 chr4 45579899 45580068 -156748279 - Charlie1 DNA MER1_type -16 2745 2594 2096 115 0 33 chr4 45580068 45580373 -156747974 - AluSx SINE Alu -15 297 3 2119 103 0 42 chr4 45580378 45580688 -156747659 - AluSg SINE Alu -13 297 1 1450 178 127 29 chr4 45580688 45580929 -156747418 - Charlie1 DNA MER1_type -170 2591 2288 1731 239 101 23 chr4 45581011 45581540 -156746807 - MER77 LTR ERV1 -6 599 54 1955 194 106 8 chr4 45581559 45582330 -156746017 - Charlie1 DNA MER1_type -546 2215 2 2378 77 0 13 chr4 45582704 45583016 -156745331 + AluY SINE Alu 1 308 -3 2323 104 0 0 chr4 45583333 45583632 -156744715 + AluSx SINE Alu 1 299 -13 431 261 152 9 chr4 45584901 45585131 -156743216 - HAL1 LINE L1 -4 2503 2241 2487 72 0 3 chr4 45585233 45585540 -156742807 - AluSc SINE Alu -3 306 1 277 215 100 100 chr4 45585639 45585769 -156742578 + L2 LINE L2 3180 3309 -4 528 253 6 99 chr4 45586067 45586229 -156742118 + MIR SINE MIR 7 153 -109 2839 10 0 0 chr4 45587215 45587525 -156740822 + AluYa5 SINE Alu 1 310 -1 22 70 0 0 chr4 45589154 45589197 -156739150 + AT_rich Low_complexity Low_complexity 1 43 0 876 142 0 0 chr4 45589753 45589880 -156738467 + AluJ SINE Alu 1 127 -175 948 150 31 38 chr4 45589881 45589906 -156738441 + AluJ SINE Alu 134 158 -154 2274 116 85 10 chr4 45589906 45590304 -156738043 - MSTA LTR MaLR 0 428 1 948 150 31 38 chr4 45590304 45590438 -156737909 + AluJ SINE Alu 158 292 -20 288 180 20 0 chr4 45590745 45590795 -156737552 + Tigger5 DNA MER2_type 2273 2323 0 2030 112 27 0 chr4 45590912 45591206 -156737141 - AluSp SINE Alu -6 307 6 2413 35 48 0 chr4 45592115 45592404 -156735943 - AluY SINE Alu -8 303 1 1546 64 0 0 chr4 45593031 45593219 -156735128 + AluY SINE Alu 1 188 -123 23 0 0 0 chr4 45594956 45594979 -156733368 + AT_rich Low_complexity Low_complexity 1 23 0 970 169 23 23 chr4 45595393 45595565 -156732782 + FAM SINE Alu 3 174 -1 1034 245 105 24 chr4 45595631 45596096 -156732251 - L1 LINE L1 -2448 3698 3196 1911 132 18 4 chr4 45646545 45646825 -156681522 - AluSx SINE Alu -11 301 18 1358 170 25 0 chr4 45647386 45647621 -156680726 - MER58B DNA MER1_type 0 341 101 262 133 0 83 chr4 45647600 45647660 -156680687 - AluSc SINE Alu 0 299 245 * 471 159 46 113 chr4 45650101 45650296 -156678051 - L1MC4 LINE L1 -1 8041 7860 2133 93 0 35 chr4 45650344 45650633 -156677714 + AluSq SINE Alu 23 301 -12 2255 136 0 63 chr4 45650767 45651164 -156677183 + pTR5 LTR ERV1 1661 2032 -406 302 253 11 0 chr4 45651165 45651256 -156677091 + LTR30 LTR ERV1 552 643 -79 1317 114 87 14 chr4 45651256 45651475 -156676872 + LTR12 LTR ERV1 480 714 0 317 273 70 56 chr4 45651477 45651590 -156676757 + MER110A LTR ERV1 217 331 -137 2449 154 100 34 chr4 45651590 45652166 -156676181 + MER4B LTR ERV1 1 779 0 477 286 100 45 chr4 45652565 45653037 -156675310 + L2 LINE L2 1682 2179 -1135 575 150 35 9 chr4 45653049 45653162 -156675185 - MER33 DNA MER1_type -2 361 246 2842 131 63 4 chr4 45653232 45653685 -156674662 - LTR12 LTR ERV1 -133 581 31 1923 128 13 10 chr4 45654442 45654740 -156673607 - AluSx SINE Alu -8 304 6 240 307 11 11 chr4 45654752 45654840 -156673507 - MIR SINE MIR -12 250 163 2152 101 3 7 chr4 45655413 45655699 -156672648 - AluSg SINE Alu -25 285 1 936 140 6 11 chr4 45655707 45655886 -156672461 + CT-rich Low_complexity Low_complexity 3 180 0 1870 119 0 79 chr4 45655911 45655924 -156672423 - AluJo SINE Alu -15 297 285 895 113 0 13 chr4 45655924 45656074 -156672273 + (TTCC)n Simple_repeat Simple_repeat 3 150 0 1870 119 0 79 chr4 45656074 45656378 -156671969 - AluJo SINE Alu -27 285 5 608 240 16 0 chr4 45657043 45657172 -156671175 + MER58 DNA MER1_type 1 131 -210 972 103 0 0 chr4 45657173 45657299 -156671048 + AluSq/x SINE Alu 1 126 -187 1818 153 0 39 chr4 45657446 45657753 -156670594 + AluJb SINE Alu 9 303 -9 287 116 0 0 chr4 45657754 45657797 -156670550 + L1MC/D LINE L1 5422 5464 -702 383 190 21 21 chr4 45657815 45658054 -156670293 + GA-rich Low_complexity Low_complexity 1 239 0 268 122 24 0 chr4 45658183 45658224 -156670123 + L1MC/D LINE L1 5550 5591 -2404 2347 108 0 9 chr4 45658245 45658561 -156669786 + AluSq SINE Alu 1 313 0 298 339 96 0 chr4 45659327 45659442 -156668905 + L2 LINE L2 3147 3272 0 277 359 54 19 chr4 45659437 45659808 -156668539 - L2 LINE L2 -965 2349 1966 * 1537 184 18 0 chr4 45660494 45660771 -156667576 - AluSx SINE Alu -30 282 1 1253 198 44 76 chr4 45661831 45661915 -156666432 - L1ME3A LINE L1 -1 6169 6084 2447 73 0 16 chr4 45661915 45662231 -156666116 + AluY SINE Alu 1 311 0 1253 198 44 76 chr4 45662231 45662272 -156666075 - L1ME3A LINE L1 -86 6084 6043 2399 113 0 0 chr4 45662272 45662582 -156665765 + AluSx SINE Alu 1 310 -2 1253 198 44 76 chr4 45662582 45662838 -156665509 - L1ME3A LINE L1 -127 6043 5799 1792 210 10 27 chr4 45662995 45663475 -156664872 - L1ME3A LINE L1 -755 5391 4920 5361 95 24 62 chr4 45664778 45665713 -156662634 - BaEV-int LTR ERV1 -5478 1418 711 258 187 132 77 chr4 45665745 45665836 -156662511 - BaEV-int LTR ERV1 -5579 1070 975 1473 129 194 217 chr4 45665942 45666984 -156661363 + LTR12 LTR ERV1 1 579 -135 1898 102 4 19 chr4 45667118 45667384 -156660963 + AluSc SINE Alu 36 297 -12 806 239 117 4 chr4 45667388 45667618 -156660729 + MIR SINE MIR 2 257 -5 392 176 35 0 chr4 45667698 45667783 -156660564 + L1MA5A LINE L1 6205 6292 -5 2014 114 32 11 chr4 45667914 45668195 -156660152 + AluSx SINE Alu 1 287 -25 2049 143 10 0 chr4 45668501 45668802 -156659545 + AluJb SINE Alu 7 310 -2 730 160 29 28 chr4 45668831 45669123 -156659224 + GA-rich Low_complexity Low_complexity 1 292 0 327 307 71 8 chr4 45669477 45669604 -156658743 - MIR3 SINE MIR -54 154 20 369 280 24 8 chr4 45669659 45669766 -156658581 + MLT1D LTR MaLR 1 112 -393 1973 171 35 22 chr4 45669766 45670135 -156658212 - MLT1A2 LTR MaLR 0 374 1 369 280 24 8 chr4 45670135 45670152 -156658195 + MLT1D LTR MaLR 112 127 -378 1671 182 11 0 chr4 45670510 45670790 -156657557 - AluJb SINE Alu -21 291 9 568 244 55 6 chr4 45672614 45672778 -156655569 + MER104 DNA Tc2 1 172 -8 550 269 0 48 chr4 45673364 45673572 -156654775 - MIR SINE MIR -62 200 3 485 149 35 0 chr4 45674036 45674150 -156654197 + (TG)n Simple_repeat Simple_repeat 2 119 0 1292 179 9 0 chr4 45674827 45675051 -156653296 - MLT1D LTR MaLR -2 503 278 270 276 141 12 chr4 45675817 45675980 -156652367 - MIR SINE MIR -12 250 67 370 242 67 33 chr4 45676162 45676282 -156652065 - MIR SINE MIR -114 148 25 411 298 43 75 chr4 45677799 45678054 -156650293 - MIR SINE MIR -12 250 4 2355 53 27 30 chr4 45678176 45678475 -156649872 - AluY SINE Alu -11 300 3 2287 70 6 32 chr4 45678484 45678800 -156649547 - AluY SINE Alu 0 311 4 1528 177 14 24 chr4 45679836 45680130 -156648217 + AluJo SINE Alu 1 291 -21 281 295 74 34 chr4 45680132 45680281 -156648066 - L2 LINE L2 -16 3297 3143 956 149 0 0 chr4 45680385 45680533 -156647814 - pTR5 LTR ERV1 -939 1499 1352 370 225 99 0 chr4 45680744 45680855 -156647492 - pTR5 LTR ERV1 -1574 864 743 1481 156 0 0 chr4 45680865 45681096 -156647251 - AluJb SINE Alu -81 231 1 759 149 55 81 chr4 45681096 45681199 -156647148 - MER33 DNA MER1_type -2356 229 125 2013 84 18 3 chr4 45681199 45681485 -156646862 - AluSg SINE Alu -20 290 1 759 149 55 81 chr4 45681485 45681616 -156646731 - MER33 DNA MER1_type -2460 125 1 790 259 255 18 chr4 45681629 45682076 -156646271 + L2 LINE L2 2191 2743 -571 698 142 9 0 chr4 45682087 45682193 -156646154 + FLAM_A SINE Alu 1 107 -35 201 350 10 31 chr4 45682295 45682392 -156645955 + L2 LINE L2 2800 2894 -420 2381 78 3 0 chr4 45682399 45682707 -156645640 - AluSc SINE Alu 0 309 1 537 245 68 80 chr4 45682766 45683003 -156645344 + L2 LINE L2 3078 3311 -2 25 0 0 0 chr4 45683016 45683041 -156645306 + AT_rich Low_complexity Low_complexity 1 25 0 306 295 85 20 chr4 45684067 45684267 -156644080 + L2 LINE L2 2836 3048 -224 243 356 96 9 chr4 45684412 45684527 -156643820 + L2 LINE L2 3136 3260 -12 198 71 0 0 chr4 45684530 45684558 -156643789 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 996 144 12 0 chr4 45685003 45685170 -156643177 - L1MA5 LINE L1 -6 6294 6126 933 219 184 72 chr4 45685626 45686056 -156642291 - MLT1J LTR MaLR -7 504 27 215 189 0 0 chr4 45686075 45686112 -156642235 - MER5A DNA MER1_type -19 170 134 1017 123 0 43 chr4 45686112 45686274 -156642073 - Tigger7 DNA MER2_type 0 2487 2333 1679 129 16 55 chr4 45686377 45686687 -156641660 - pTR5 LTR ERV1 -932 1506 1209 253 346 0 0 chr4 45686689 45686770 -156641577 + G-rich Low_complexity Low_complexity 1 81 0 2085 184 17 28 chr4 45686772 45687233 -156641114 - pTR5 LTR ERV1 -1240 1198 743 1520 47 11 5 chr4 45687233 45687424 -156640923 + AluY SINE Alu 108 299 -12 1516 102 74 5 chr4 45687429 45687644 -156640703 - MER30 DNA MER1_type 0 230 1 419 290 6 56 chr4 45687644 45687806 -156640541 + MER5B DNA MER1_type 25 178 0 352 337 57 29 chr4 45687817 45687992 -156640355 - MER5A DNA MER1_type -3 186 7 1813 124 53 3 chr4 45688280 45688563 -156639784 - AluSx SINE Alu -15 297 1 2163 93 0 31 chr4 45689019 45689340 -156639007 - AluSx SINE Alu -1 311 1 582 211 16 8 chr4 45689438 45689566 -156638781 - L1MC1 LINE L1 -6 6327 6199 1527 175 26 72 chr4 45689566 45689915 -156638432 + MER41C LTR ERV1 9 341 -213 1526 197 37 53 chr4 45689908 45690283 -156638064 + MER41C LTR ERV1 186 554 0 * 4292 133 33 46 chr4 45690283 45691071 -156637276 - L1MC1 LINE L1 -123 6210 5433 806 158 105 57 chr4 45691174 45691383 -156636964 - Tigger7 DNA MER2_type -119 2372 2 507 272 40 0 chr4 45691383 45691508 -156636839 - MER5A DNA MER1_type -53 136 7 1795 155 0 20 chr4 45691542 45691873 -156636474 - AluSx SINE Alu 0 312 1 2142 82 0 4 chr4 45693068 45693378 -156634969 + AluSp SINE Alu 5 313 0 823 163 0 0 chr4 45693379 45693502 -156634845 - AluJo/FLAM SINE Alu -179 123 1 252 304 78 17 chr4 45693615 45693730 -156634617 - MIR3 SINE MIR -1 207 86 1722 131 7 52 chr4 45693771 45694077 -156634270 - AluJb SINE Alu -20 292 1 2222 67 0 67 chr4 45694185 45694513 -156633834 - AluY SINE Alu -5 306 1 205 344 21 32 chr4 45694543 45694636 -156633711 - L2 LINE L2 -31 3241 3150 1284 191 78 28 chr4 45694997 45695279 -156633068 - MLT1B LTR MaLR -2 388 93 187 89 0 67 chr4 45698296 45698341 -156630006 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 2346 97 0 0 chr4 45698481 45698790 -156629557 - AluSx SINE Alu -3 309 1 1097 145 16 16 chr4 45698846 45699032 -156629315 + AluJb SINE Alu 1 186 -126 11730 58 11 2 chr4 45699132 45700555 -156627792 - HERV17 LTR ERV1 -4761 3865 2430 2778 71 0 0 chr4 45700540 45700876 -156627471 - HERV17 LTR ERV1 -6612 2014 1679 * 14311 67 31 7 chr4 45700873 45702693 -156625654 - HERV17 LTR ERV1 -6762 1864 1 1885 80 88 0 chr4 45702693 45702943 -156625404 - LTR17 LTR ERV1 0 780 509 2425 70 3 0 chr4 45703043 45703344 -156625003 - LTR17 LTR ERV1 -478 302 1 314 256 168 8 chr4 45703363 45703488 -156624859 + MER110 LTR ERV1 346 490 -1 4135 92 16 2 chr4 45703519 45704065 -156624282 + MER41A LTR ERV1 1 554 0 2326 84 0 7 chr4 45705697 45706005 -156622342 - AluSq SINE Alu -7 306 1 326 167 14 0 chr4 45706271 45706277 -156622070 + (TA)n Simple_repeat Simple_repeat 1 5 -68 2210 63 18 0 chr4 45706277 45706563 -156621784 + AluY SINE Alu 1 291 -20 326 167 14 0 chr4 45706563 45706628 -156621719 + (TA)n Simple_repeat Simple_repeat 5 73 0 241 326 130 0 chr4 45706660 45706752 -156621595 - L2 LINE L2 0 3313 3210 298 319 243 0 chr4 45707196 45707340 -156621007 + MER91A DNA MER1_type 1 179 -17 1930 131 13 3 chr4 45707498 45707796 -156620551 + AluJo SINE Alu 11 311 -1 2325 101 0 0 chr4 45707807 45708115 -156620232 + AluSp SINE Alu 1 308 -5 682 186 0 0 chr4 45708127 45708245 -156620102 + FLAM_C SINE Alu 2 119 -24 294 29 0 0 chr4 45708248 45708283 -156620064 + (TAA)n Simple_repeat Simple_repeat 2 36 0 250 298 0 0 chr4 45708799 45708856 -156619491 - MER113 DNA MER1_type? -7 514 458 28 48 0 0 chr4 45708888 45708930 -156619417 + AT_rich Low_complexity Low_complexity 1 42 0 1985 148 0 0 chr4 45708998 45709301 -156619046 - AluSx SINE Alu -9 303 1 240 260 167 0 chr4 45709321 45709417 -156618930 - MER113 DNA MER1_type? -399 122 11 207 226 0 19 chr4 45709525 45709578 -156618769 + GA-rich Low_complexity Low_complexity 1 52 0 1684 189 0 10 chr4 45709990 45710291 -156618056 + AluJo SINE Alu 1 298 -14 688 124 86 0 chr4 45710306 45710411 -156617936 - MER21B LTR ERV1 -161 702 589 723 188 12 12 chr4 45710411 45710657 -156617690 + CT-rich Low_complexity Low_complexity 1 246 0 1998 118 0 53 chr4 45710657 45710978 -156617369 - AluSg SINE Alu -4 306 3 593 213 14 21 chr4 45710980 45711120 -156617227 - MER21B LTR ERV1 -259 604 466 1842 143 272 57 chr4 45711120 45711768 -156616579 - LTR48 LTR ERV1 0 787 1 * 2234 209 13 26 chr4 45711768 45712231 -156616116 - MER21B LTR ERV1 -406 457 1 588 296 206 26 chr4 45712704 45713126 -156615221 - LTR33 LTR ERVL -4 517 20 475 125 0 14 chr4 45713243 45713315 -156615032 - MLT1B LTR MaLR -292 98 28 390 169 0 52 chr4 45713315 45713392 -156614955 - MLT1B LTR MaLR -317 73 1 2175 97 0 10 chr4 45713465 45713763 -156614584 + AluSq SINE Alu 1 295 -18 991 206 0 29 chr4 45713892 45714101 -156614246 + L1MB7 LINE L1 5626 5828 -356 7196 179 41 13 chr4 45714106 45715451 -156612896 - MER52A LTR ERV1 0 1755 374 602 186 18 54 chr4 45715449 45715616 -156612731 - MER52A LTR ERV1 -1594 161 1 * 1279 239 24 0 chr4 45715622 45715919 -156612428 + L1MB7 LINE L1 5869 6172 -12 343 302 19 88 chr4 45716186 45716401 -156611946 - MIR3 SINE MIR -6 202 3 320 216 16 80 chr4 45716404 45716529 -156611818 + MIR SINE MIR 103 219 -43 574 284 107 69 chr4 45717429 45717681 -156610666 - L1M4 LINE L1 -871 5275 5034 1582 156 33 29 chr4 45717681 45717988 -156610359 - AluJo SINE Alu -4 308 1 574 284 107 69 chr4 45717988 45718587 -156609760 - L1M4 LINE L1 -1112 5034 4392 282 313 12 12 chr4 45719183 45719266 -156609081 + L2 LINE L2 3001 3083 -189 2197 117 98 3 chr4 45719450 45719818 -156608529 + MER57A LTR ERV1 1 403 0 1117 185 118 85 chr4 45719841 45720231 -156608116 + MER57A LTR ERV1 1 403 0 1806 125 6 44 chr4 45720237 45720556 -156607791 - AluSx SINE Alu -5 307 1 826 218 103 16 chr4 45720564 45720807 -156607540 + MER110A LTR ERV1 27 290 -178 5746 77 1 6 chr4 45720807 45721546 -156606801 - LTR17 LTR ERV1 0 780 1 2211 83 10 3 chr4 45721546 45721836 -156606511 - HERV17 LTR ERV1 0 8626 8335 306 51 0 0 chr4 45721826 45721865 -156606482 - HERV17 LTR ERV1 -1078 7548 7510 * 16328 41 11 0 chr4 45721858 45723749 -156604598 - HERV17 LTR ERV1 -2607 6019 4108 212 259 86 0 chr4 45723908 45723966 -156604381 + L2 LINE L2 3250 3312 -1 595 0 13 13 chr4 45724831 45724907 -156603440 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 2080 113 0 3 chr4 45724910 45725211 -156603136 - AluY SINE Alu -11 300 1 223 111 0 44 chr4 45725211 45725256 -156603091 + (TCTA)n Simple_repeat Simple_repeat 1 43 0 4360 85 59 69 chr4 45725512 45725742 -156602605 - LTR12 LTR ERV1 0 688 457 2328 57 17 0 chr4 45725742 45726038 -156602309 + AluY SINE Alu 1 301 -10 4360 85 59 69 chr4 45726038 45726502 -156601845 - LTR12 LTR ERV1 -231 457 1 1229 138 177 53 chr4 45727123 45727406 -156600941 - MLT1D LTR MaLR -2 503 186 2603 112 10 8 chr4 45727406 45727790 -156600557 + LOR1a LTR ERV1 1 385 -112 1128 115 0 0 chr4 45727815 45727963 -156600384 + LOR1a LTR ERV1 350 497 0 1269 123 73 5 chr4 45727973 45728177 -156600170 - MLT1D LTR MaLR -287 218 1 514 275 191 25 chr4 45728274 45728830 -156599517 - L1ME3A LINE L1 -230 5923 5276 22 0 0 0 chr4 45728888 45728910 -156599437 + AT_rich Low_complexity Low_complexity 1 22 0 225 221 71 94 chr4 45729403 45729530 -156598817 - L1P LINE L1 -1133 5013 4890 500 294 52 72 chr4 45729580 45729677 -156598670 - L1ME3A LINE L1 -3393 2736 2639 1476 94 38 13 chr4 45729677 45729916 -156598431 - L1MA8 LINE L1 0 6291 6047 500 294 52 72 chr4 45729916 45730449 -156597898 - L1ME3A LINE L1 -3490 2639 2114 1478 171 0 12 chr4 45730454 45730705 -156597642 - AluSx SINE Alu -64 248 1 739 277 29 55 chr4 45730964 45731232 -156597115 - L1MEd LINE L1 -4729 1581 1307 2405 98 0 0 chr4 45731232 45731538 -156596809 - AluSx SINE Alu -6 306 1 739 277 29 55 chr4 45731538 45731809 -156596538 - L1MEd LINE L1 -5003 1307 1016 2027 149 7 3 chr4 45731809 45732111 -156596236 + AluJb SINE Alu 1 303 -9 739 277 29 55 chr4 45732111 45732224 -156596123 - L1MEd LINE L1 -5294 1016 902 10319 100 6 66 chr4 45732324 45732406 -156595941 + Tigger1 DNA MER2_type 865 950 -1468 2352 92 20 0 chr4 45732406 45732711 -156595636 + AluSx SINE Alu 1 311 -1 10319 100 6 66 chr4 45732711 45733248 -156595099 + Tigger1 DNA MER2_type 950 1518 -900 2240 108 3 0 chr4 45733248 45733545 -156594802 + AluSg SINE Alu 1 298 -12 10319 100 6 66 chr4 45733545 45734135 -156594212 + Tigger1 DNA MER2_type 1518 2142 -276 2169 116 3 0 chr4 45734135 45734438 -156593909 - AluSg SINE Alu -6 304 1 10319 100 6 66 chr4 45734438 45734627 -156593720 + Tigger1 DNA MER2_type 2142 2154 -264 2249 107 3 3 chr4 45734627 45734926 -156593421 - AluSq SINE Alu -14 299 1 10319 100 6 66 chr4 45734926 45735177 -156593170 + Tigger1 DNA MER2_type 2154 2418 0 687 220 0 75 chr4 45735177 45735233 -156593114 - MER33 DNA MER1_type -2387 198 139 2058 119 0 7 chr4 45735233 45735526 -156592821 + AluSx SINE Alu 1 291 -21 687 220 0 75 chr4 45735526 45735669 -156592678 - MER33 DNA MER1_type -2446 139 14 320 335 38 29 chr4 45735704 45735913 -156592434 + L2 LINE L2 2513 2723 -591 488 263 15 29 chr4 45736192 45736329 -156592018 + L2 LINE L2 3136 3270 -2 192 267 187 0 chr4 45736815 45736890 -156591457 - L2 LINE L2 -10 3262 3174 353 345 35 0 chr4 45737517 45737688 -156590659 - MLT1I LTR MaLR -232 177 1 232 343 0 0 chr4 45737699 45737766 -156590581 - L2 LINE L2 -978 2336 2270 432 260 16 16 chr4 45737772 45737895 -156590452 - MER5A DNA MER1_type -7 182 60 228 302 43 58 chr4 45737788 45737927 -156590420 + MER5A DNA MER1_type 35 171 -18 * 526 257 150 81 chr4 45737975 45738162 -156590185 - L2 LINE L2 -1216 2098 1925 2244 85 0 0 chr4 45738162 45738443 -156589904 - AluSg SINE Alu -29 281 1 526 257 150 81 chr4 45738443 45738628 -156589719 - L2 LINE L2 -1389 1925 1754 1300 45 13 0 chr4 45738628 45738785 -156589562 - L1PA4 LINE L1 -1 6154 5996 526 257 150 81 chr4 45738785 45738979 -156589368 - L2 LINE L2 -1560 1754 1492 603 205 20 46 chr4 45738996 45739147 -156589200 - MER5B DNA MER1_type -17 161 15 282 338 76 40 chr4 45739202 45739400 -156588947 + L2 LINE L2 3008 3212 -60 2435 70 0 7 chr4 45739722 45740023 -156588324 + AluY SINE Alu 1 299 -12 1263 121 0 0 chr4 45740023 45740197 -156588150 + AluSg/x SINE Alu 132 305 -5 489 261 0 17 chr4 45740493 45740608 -156587739 - MER58B DNA MER1_type -35 306 194 1426 203 92 45 chr4 45740608 45741173 -156587174 - MLT1E1 LTR MaLR 0 593 1 658 205 19 68 chr4 45741176 45741381 -156586966 - MER58B DNA MER1_type -146 195 1 2407 83 3 0 chr4 45742166 45742466 -156585881 + AluSq SINE Alu 1 301 -12 542 301 116 14 chr4 45742468 45742684 -156585663 - MIR SINE MIR -22 240 3 21 0 0 0 chr4 45743514 45743535 -156584812 + AT_rich Low_complexity Low_complexity 1 21 0 428 252 153 0 chr4 45744956 45745067 -156583280 - L2 LINE L2 -1 3271 3144 1581 94 14 0 chr4 45745245 45745457 -156582890 - AluSp SINE Alu -98 215 1 392 251 51 42 chr4 45745462 45745677 -156582670 - L1MEd LINE L1 -5244 875 659 287 320 53 67 chr4 45746089 45746314 -156582033 + L2 LINE L2 2580 2801 -513 271 62 0 0 chr4 45746339 45746371 -156581976 + LOR1b LTR ERV1 1 32 -429 3327 132 4 0 chr4 45746373 45746857 -156581490 + LOR1a LTR ERV1 12 497 0 1614 159 50 25 chr4 45747423 45747610 -156580737 - AluJb SINE Alu 0 312 117 405 0 0 0 chr4 45747610 45747655 -156580692 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1614 159 50 25 chr4 45747655 45747769 -156580578 - AluJb SINE Alu -195 117 7 263 286 0 16 chr4 45747881 45747944 -156580403 + L2 LINE L2 3246 3307 -6 606 136 52 97 chr4 45747991 45748087 -156580260 - MER69 DNA AcHobo -1 2525 2437 1737 185 0 19 chr4 45748087 45748401 -156579946 + AluJo SINE Alu 1 308 -4 606 136 52 97 chr4 45748401 45748458 -156579889 - MER69 DNA AcHobo -89 2437 2379 432 175 0 52 chr4 45748459 45748556 -156579791 - L1MA9 LINE L1 0 6312 6221 520 289 96 70 chr4 45748571 45748883 -156579464 + L2 LINE L2 2953 3272 0 1669 99 13 4 chr4 45749036 45749269 -156579078 + AluSx SINE Alu 1 235 -77 2241 124 0 0 chr4 45749796 45750103 -156578244 - AluSq SINE Alu -6 307 1 2323 110 0 0 chr4 45750678 45750986 -156577361 - AluSx SINE Alu -4 308 1 1947 103 44 0 chr4 45751417 45751689 -156576658 + AluY SINE Alu 1 284 -27 352 258 101 0 chr4 45751818 45751907 -156576440 + MIR SINE MIR 43 140 -122 285 351 37 11 chr4 45752106 45752294 -156576053 - MER117 DNA MER1_type -1 196 4 1133 184 109 141 chr4 45752356 45752889 -156575458 - LTR49 LTR ERV1 -50 545 30 276 156 21 10 chr4 45752889 45752985 -156575362 + (TA)n Simple_repeat Simple_repeat 2 98 0 1916 117 0 8 chr4 45752985 45753241 -156575106 - AluSx SINE Alu -21 291 38 613 219 126 27 chr4 45753282 45753465 -156574882 - MIR SINE MIR -28 234 34 514 108 0 14 chr4 45753589 45753663 -156574684 - MER34 LTR ERV1 0 542 470 747 186 0 8 chr4 45753663 45753792 -156574555 + FRAM SINE Alu 47 174 -2 1105 222 74 28 chr4 45753795 45753962 -156574385 - MER34 LTR ERV1 -55 487 300 2285 101 0 7 chr4 45753962 45754260 -156574087 + AluSg SINE Alu 6 301 -9 1105 222 74 28 chr4 45754260 45754375 -156573972 - MER34 LTR ERV1 -242 300 192 268 61 0 0 chr4 45754375 45754408 -156573939 + MER34B LTR ERV1 1 33 -532 * 1358 177 30 97 chr4 45754379 45754740 -156573607 + LTR49 LTR ERV1 5 341 -254 490 171 63 9 chr4 45754790 45754901 -156573446 + LTR48 LTR ERV1 614 730 -57 820 139 0 56 chr4 45754901 45755045 -156573302 - FLAM_C SINE Alu -7 136 1 515 216 37 45 chr4 45755098 45755232 -156573115 - MER34 LTR ERV1 -332 210 78 851 120 165 0 chr4 45755232 45755365 -156572982 + AluSg/x SINE Alu 152 306 -6 404 153 0 0 chr4 45755365 45755424 -156572923 - MER34 LTR ERV1 -471 71 13 370 282 48 8 chr4 45756433 45756557 -156571790 - L2 LINE L2 -3 3269 3141 1179 108 0 0 chr4 45756631 45756788 -156571559 + AluSc SINE Alu 1 157 -152 216 0 0 0 chr4 45756793 45756817 -156571530 + (A)n Simple_repeat Simple_repeat 1 24 0 1965 143 23 0 chr4 45756872 45757172 -156571175 - AluSx SINE Alu -5 307 1 918 112 0 22 chr4 45757699 45757833 -156570514 - AluSx SINE Alu -18 294 164 589 157 0 0 chr4 45757833 45757916 -156570431 - AluSx SINE Alu -229 83 1 10123 32 6 0 chr4 45758276 45760205 -156568142 + L1PA4 LINE L1 4234 6171 0 219 341 22 50 chr4 45760281 45760463 -156567884 - L2 LINE L2 -322 2991 2815 204 231 0 19 chr4 45760886 45760938 -156567409 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 192 298 0 0 chr4 45761037 45761084 -156567263 + L2 LINE L2 2608 2654 -660 327 239 73 9 chr4 45762849 45762958 -156565389 - MIR SINE MIR -66 196 81 508 241 57 71 chr4 45764016 45764228 -156564119 - MER112 DNA MER1_type -1 259 51 2143 95 3 26 chr4 45764299 45764603 -156563744 + AluSx SINE Alu 1 297 -15 187 240 100 0 chr4 45764670 45764720 -156563627 - L2 LINE L2 -1 3271 3217 2367 251 27 6 chr4 45764986 45765513 -156562834 + MLT1H1 LTR MaLR 18 555 0 23 0 0 0 chr4 45765686 45765709 -156562638 + AT_rich Low_complexity Low_complexity 1 23 0 310 257 229 0 chr4 45765752 45765861 -156562486 - MER94 DNA DNA 0 134 1 654 243 60 16 chr4 45766265 45766450 -156561897 + MIR SINE MIR 12 204 -58 277 287 324 7 chr4 45766702 45766838 -156561509 + MER91A DNA MER1_type 4 182 -14 261 0 0 0 chr4 45767095 45767124 -156561223 + (TG)n Simple_repeat Simple_repeat 1 29 0 817 238 63 40 chr4 45767190 45767442 -156560905 - MIR SINE MIR -2 260 3 303 256 96 8 chr4 45768282 45768407 -156559940 + L1ME4a LINE L1 5927 6062 -59 2420 84 0 0 chr4 45768743 45769041 -156559306 - AluSx SINE Alu -13 299 2 744 117 27 9 chr4 45769316 45769427 -156558920 - FRAM SINE Alu -16 160 48 237 224 0 0 chr4 45769431 45769489 -156558858 + (TA)n Simple_repeat Simple_repeat 1 58 0 242 114 0 0 chr4 45769491 45769526 -156558821 - L1MC4 LINE L1 -144 7898 7864 1354 157 83 12 chr4 45769780 45770022 -156558325 - AluJo SINE Alu -53 259 1 2065 122 0 16 chr4 45770029 45770333 -156558014 - AluSx SINE Alu -13 299 1 4846 94 30 5 chr4 45771232 45771860 -156556487 - LTR9B LTR ERV1 0 644 1 554 282 103 54 chr4 45771863 45772292 -156556055 - LTR33 LTR ERVL -1 520 71 1429 160 29 0 chr4 45772306 45772544 -156555803 + L1MC/D LINE L1 5488 5732 -612 483 310 38 22 chr4 45772623 45772807 -156555540 + L2 LINE L2 2588 2774 -540 21 36 0 0 chr4 45773074 45773102 -156555245 + AT_rich Low_complexity Low_complexity 1 28 0 4832 140 48 26 chr4 45773121 45773249 -156555098 - L1MC2 LINE L1 -18 6326 6202 2022 191 93 30 chr4 45773249 45773710 -156554637 - LTR2B LTR ERV1 0 490 1 4832 140 48 26 chr4 45773710 45774437 -156553910 - L1MC2 LINE L1 -142 6202 5452 1798 198 65 72 chr4 45774437 45774989 -156553358 + LTR10A LTR ERV1 1 548 -61 873 226 81 103 chr4 45774998 45775541 -156552806 + LTR10A-int LTR ERV1 1 531 -6118 733 42 53 0 chr4 45775712 45775807 -156552540 + LTR10A-int LTR ERV1 1621 1720 -5176 359 226 167 0 chr4 45775809 45775893 -156552454 - LTR8 LTR ERV1 -438 253 156 11803 156 12 19 chr4 45775894 45779042 -156549305 + Harlequin LTR ERV1 1806 6623 -26 1867 163 152 40 chr4 45779071 45779528 -156548819 + LTR10A LTR ERV1 1 570 -39 2457 68 3 10 chr4 45779528 45779838 -156548509 - AluY SINE Alu -3 308 1 1867 163 152 40 chr4 45779838 45779883 -156548464 + LTR10A LTR ERV1 570 609 0 495 128 0 32 chr4 45779883 45779977 -156548370 - L1MC2 LINE L1 -2540 5455 5365 351 285 92 40 chr4 45780031 45780377 -156547970 - MLT1H LTR MaLR 0 549 114 285 220 0 0 chr4 45780662 45780721 -156547626 - MLT1I LTR MaLR -269 140 82 1195 257 88 14 chr4 45781219 45781710 -156546637 + Charlie2a DNA MER1_type 1628 2154 -708 726 103 206 0 chr4 45781736 45781862 -156546485 - L1PA10 LINE L1 0 6168 6017 608 262 20 0 chr4 45782061 45782210 -156546137 + MER5A DNA MER1_type 32 183 -6 479 250 60 49 chr4 45782753 45783088 -156545259 - MLT1H LTR MaLR -7 542 123 258 279 29 0 chr4 45783264 45783332 -156545015 + L2 LINE L2 3242 3311 -2 7245 47 10 0 chr4 45783418 45784691 -156543656 + L1PA6 LINE L1 4868 6149 -5 281 216 11 0 chr4 45785357 45785445 -156542902 + GA-rich Low_complexity Low_complexity 3 91 0 760 94 28 33 chr4 45785464 45785644 -156542703 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 287 232 12 0 chr4 45785668 45785750 -156542597 + GA-rich Low_complexity Low_complexity 3 85 0 2392 92 10 0 chr4 45785853 45786157 -156542190 + AluSx SINE Alu 1 307 -5 518 244 90 6 chr4 45786954 45787172 -156541175 - MIR SINE MIR -21 241 4 350 204 68 0 chr4 45787637 45787725 -156540622 + MIR SINE MIR 79 172 -90 2209 106 0 26 chr4 45787726 45788038 -156540309 - AluSq SINE Alu -9 304 1 344 302 58 13 chr4 45788208 45788421 -156539926 + MIR SINE MIR 1 222 -40 383 292 91 27 chr4 45789977 45790196 -156538151 - L2 LINE L2 -6 3307 3075 207 0 0 0 chr4 45790216 45790239 -156538108 + (A)n Simple_repeat Simple_repeat 1 23 0 2013 128 7 7 chr4 45790383 45790673 -156537674 + AluSx SINE Alu 1 290 -22 1741 184 125 21 chr4 45791589 45792012 -156536335 + MLT1C LTR MaLR 1 467 0 209 95 0 24 chr4 45792086 45792128 -156536219 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 2250 146 42 30 chr4 45792404 45792907 -156535440 - MLT2A2 LTR ERVL 0 515 1 1843 172 3 3 chr4 45793748 45794044 -156534303 + AluJb SINE Alu 1 296 -16 2202 98 0 3 chr4 45794067 45794385 -156533962 + AluSx SINE Alu 1 317 0 247 220 17 18 chr4 45796176 45796246 -156532101 + MIR SINE MIR 43 116 -92 1019 270 114 36 chr4 45796994 45797714 -156530633 + L1ME4a LINE L1 5337 6119 -2 1830 150 44 0 chr4 45797718 45798011 -156530336 - AluJo SINE Alu -6 306 1 1001 217 82 3 chr4 45798678 45799132 -156529215 + LTR33 LTR ERVL 2 513 -8 2586 74 0 0 chr4 45799862 45800173 -156528174 + AluY SINE Alu 1 311 0 1069 168 110 70 chr4 45800985 45801023 -156527324 - L1MC4 LINE L1 -256 7786 7751 2472 91 0 0 chr4 45801023 45801331 -156527016 - AluY SINE Alu -3 308 1 1069 168 110 70 chr4 45801331 45801429 -156526918 - L1MC4 LINE L1 -291 7751 7658 2162 140 0 0 chr4 45801429 45801736 -156526611 - AluSx SINE Alu -5 307 1 1069 168 110 70 chr4 45801736 45801943 -156526404 - L1MC4 LINE L1 -384 7658 7428 194 306 27 27 chr4 45803561 45803708 -156524639 - L2 LINE L2 -171 3101 2955 510 208 85 176 chr4 45803718 45803962 -156524385 + L2 LINE L2 2876 3056 -257 2300 104 3 0 chr4 45803962 45804260 -156524087 - AluSq SINE Alu -14 299 1 510 208 85 176 chr4 45804260 45804497 -156523850 + L2 LINE L2 3056 3313 0 549 327 36 14 chr4 45804944 45805357 -156522990 + L2 LINE L2 2365 2786 -528 2091 117 127 24 chr4 45805358 45805735 -156522612 + MSTA LTR MaLR 1 416 -12 333 306 169 4 chr4 45805736 45805997 -156522350 + L2 LINE L2 2804 3107 -206 1086 250 42 7 chr4 45806057 45806520 -156521827 - LTR33 LTR ERVL -3 518 1 2071 71 0 26 chr4 45806582 45806851 -156521496 + AluY SINE Alu 39 300 -11 2156 95 0 0 chr4 45806891 45807219 -156521128 + AluY SINE Alu 1 328 0 2006 144 3 0 chr4 45807228 45807513 -156520834 + AluSx SINE Alu 1 286 -26 2471 76 7 3 chr4 45807755 45808057 -156520290 + AluSp SINE Alu 1 303 -10 2016 115 40 0 chr4 45808306 45808584 -156519763 - AluSx SINE Alu -21 291 3 2436 72 3 0 chr4 45808663 45808967 -156519380 - AluY SINE Alu -5 306 2 2209 96 24 0 chr4 45809015 45809306 -156519041 - AluSc SINE Alu -11 298 1 210 154 0 26 chr4 45809601 45809640 -156518707 + GA-rich Low_complexity Low_complexity 3 40 0 391 275 38 0 chr4 45809698 45809829 -156518518 - MIR SINE MIR -61 201 66 2516 41 7 0 chr4 45810371 45810661 -156517686 - AluY SINE Alu -19 292 1 2266 110 0 0 chr4 45811042 45811343 -156517004 + AluSx SINE Alu 1 301 -11 537 267 47 58 chr4 45811397 45811655 -156516692 + MLT1I LTR MaLR 28 282 -127 2257 108 0 10 chr4 45812041 45812348 -156515999 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr4 45813070 45813092 -156515255 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 45813548 45813571 -156514776 + AT_rich Low_complexity Low_complexity 1 23 0 2091 125 3 13 chr4 45813571 45813883 -156514464 - AluSc SINE Alu 0 309 1 494 267 41 12 chr4 45814016 45814188 -156514159 + MER117 DNA MER1_type 1 177 -20 287 308 44 15 chr4 45814927 45815107 -156513240 - MIR SINE MIR -2 260 3 1091 199 7 15 chr4 45816852 45817114 -156511233 + MLT1A1 LTR MaLR 1 328 -37 2413 93 0 0 chr4 45817114 45817416 -156510931 + AluY SINE Alu 1 302 -9 1091 199 7 15 chr4 45817416 45817454 -156510893 + MLT1A1 LTR MaLR 328 365 0 373 329 0 7 chr4 45817482 45817622 -156510725 + (TG)n Simple_repeat Simple_repeat 1 139 0 457 229 0 71 chr4 45818719 45818798 -156509549 - MIR SINE MIR -26 236 169 2174 97 0 21 chr4 45818798 45819111 -156509236 - AluSg SINE Alu 0 308 2 457 229 0 71 chr4 45819111 45819170 -156509177 - MIR SINE MIR -93 169 107 1899 212 105 26 chr4 45819259 45819717 -156508630 + MLT2B1 LTR ERVL 1 494 -26 184 122 49 0 chr4 45819718 45819759 -156508588 + (TA)n Simple_repeat Simple_repeat 2 44 0 380 297 126 28 chr4 45819881 45820063 -156508284 + MIR SINE MIR 8 207 -55 512 167 23 61 chr4 45820066 45820198 -156508149 - Charlie5 DNA MER1_type -30 2582 2456 5401 132 19 16 chr4 45820204 45820428 -156507919 + Tigger1 DNA MER2_type 24 246 -2172 2313 105 0 0 chr4 45820428 45820724 -156507623 - AluSx SINE Alu -16 296 1 5401 132 19 16 chr4 45820724 45821330 -156507017 + Tigger1 DNA MER2_type 246 857 -1561 24 0 0 0 chr4 45823305 45823329 -156505018 + AT_rich Low_complexity Low_complexity 1 24 0 396 267 133 38 chr4 45823425 45823635 -156504712 + MER102a DNA MER1_type 99 328 -2 2255 109 85 15 chr4 45824044 45824384 -156503963 - THE1B LTR MaLR 0 364 1 2210 104 20 0 chr4 45824826 45825123 -156503224 - AluSc SINE Alu -6 303 1 21 0 0 0 chr4 45825223 45825244 -156503103 + AT_rich Low_complexity Low_complexity 1 21 0 620 236 68 44 chr4 45825320 45825570 -156502777 + MER112 DNA MER1_type 1 256 0 1653 176 37 4 chr4 45825770 45826077 -156502270 + AluJo SINE Alu 1 316 0 1580 180 0 21 chr4 45826621 45826904 -156501443 + AluJb SINE Alu 1 277 -35 2385 96 3 0 chr4 45826957 45827258 -156501089 + AluSp SINE Alu 1 302 -11 332 274 29 98 chr4 45828773 45828977 -156499370 - MIR SINE MIR 0 262 73 515 274 42 30 chr4 45829567 45829870 -156498477 - MER115 DNA AcHobo -256 437 67 390 235 12 0 chr4 45829872 45829957 -156498390 + MER5A DNA MER1_type 9 94 -95 2382 90 0 7 chr4 45829975 45830274 -156498073 - AluSx SINE Alu -15 297 1 2409 69 0 16 chr4 45931091 45931396 -156396951 - AluY SINE Alu -3 308 9 8268 99 24 4 chr4 45931497 45932636 -156395711 + THE1-int LTR MaLR 420 1580 0 279 180 86 35 chr4 45932841 45932943 -156395404 - MLT1L LTR MaLR 0 615 399 2376 61 34 0 chr4 45933400 45933694 -156394653 + AluY SINE Alu 1 304 -7 286 257 80 26 chr4 45935677 45935790 -156392557 - Tigger8 DNA MER2_type -413 253 135 510 299 34 48 chr4 45936426 45936633 -156391714 + MIR SINE MIR 53 256 -6 1787 117 4 0 chr4 45936682 45936922 -156391425 + AluSx SINE Alu 2 242 -70 243 0 0 0 chr4 45936924 45936951 -156391396 + (A)n Simple_repeat Simple_repeat 1 27 0 1683 122 0 9 chr4 45936953 45937182 -156391165 + AluSq SINE Alu 1 227 -86 250 323 121 10 chr4 45937326 45937425 -156390922 + L2 LINE L2 3127 3236 -36 25 0 0 0 chr4 45937473 45937498 -156390849 + AT_rich Low_complexity Low_complexity 1 25 0 229 269 108 84 chr4 45939360 45939527 -156388820 - MIR3 SINE MIR -27 181 1 23 0 0 0 chr4 45940607 45940630 -156387717 + AT_rich Low_complexity Low_complexity 1 23 0 216 67 0 0 chr4 45940900 45940930 -156387417 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 254 344 98 47 chr4 45941628 45942060 -156386287 + L2 LINE L2 2614 3053 -219 1089 244 18 0 chr4 45942405 45942622 -156385725 + MER58A DNA MER1_type 1 221 -3 642 232 140 0 chr4 45942632 45942796 -156385551 + MER5A DNA MER1_type 1 187 -2 214 313 212 0 chr4 45942947 45943046 -156385301 + L2 LINE L2 3191 3310 -3 266 130 43 0 chr4 45943378 45943424 -156384923 + MIR SINE MIR 183 230 -32 3876 70 12 0 chr4 45943603 45944103 -156384244 - THE1B-int LTR MaLR -1073 507 2 2431 122 48 17 chr4 45944104 45944457 -156383890 - THE1B LTR MaLR 0 364 1 183 42 0 0 chr4 45944656 45944680 -156383667 + (CAG)n Simple_repeat Simple_repeat 1 24 0 1051 296 30 21 chr4 45945097 45945760 -156382587 + L2 LINE L2 2570 3313 0 385 269 218 24 chr4 45947764 45948062 -156380285 + L1MC4a LINE L1 5352 5707 -2101 505 163 0 0 chr4 45948063 45948143 -156380204 - AluJ/FRAM SINE Alu -9 303 224 1940 123 0 0 chr4 45948143 45948396 -156379951 - AluSx SINE Alu -59 253 1 433 256 191 15 chr4 45948407 45948680 -156379667 + L1MC4a LINE L1 5710 6030 -1778 595 167 25 17 chr4 45949013 45949133 -156379214 + MLT1B LTR MaLR 259 379 -11 2069 138 3 6 chr4 45949902 45950214 -156378133 + AluSq SINE Alu 3 313 0 267 54 0 0 chr4 45950241 45950278 -156378069 + (A)n Simple_repeat Simple_repeat 1 37 0 384 322 47 0 chr4 45951312 45951461 -156376886 + MER103 DNA DNA 11 166 0 246 292 88 26 chr4 45951586 45951699 -156376648 + MIR3 SINE MIR 69 188 -20 299 339 85 0 chr4 45952744 45952874 -156375473 + L2 LINE L2 2637 2777 -537 565 251 139 71 chr4 45952894 45953217 -156375130 + L2 LINE L2 2965 3309 -4 1387 107 13 31 chr4 45953488 45953713 -156374634 - L1PBa LINE L1 -6007 856 636 700 168 17 0 chr4 45953715 45953834 -156374513 - L1PBa LINE L1 -6663 200 80 835 166 109 49 chr4 45953834 45954221 -156374126 - LTR7 LTR ERV1 0 450 1 517 125 25 0 chr4 45954222 45954302 -156374045 - L1PBa LINE L1 -6780 83 2 846 118 128 21 chr4 45954304 45954430 -156373917 - L1 LINE L1 -1535 4611 4457 1953 94 24 42 chr4 45954430 45954718 -156373629 - AluSq SINE Alu -12 301 19 846 118 128 21 chr4 45954718 45954778 -156373569 - L1 LINE L1 -1689 4457 4405 436 242 11 0 chr4 45955750 45955845 -156372502 + MER103 DNA DNA 21 116 -50 204 313 45 45 chr4 45956563 45956675 -156371672 + MIR SINE MIR 16 127 -81 2166 140 100 124 chr4 45956803 45957254 -156371093 - Charlie1 DNA MER1_type -6 2755 2295 2317 123 0 0 chr4 45957254 45957564 -156370783 - AluSx SINE Alu -2 310 1 2166 140 100 124 chr4 45957564 45957695 -156370652 - Charlie1 DNA MER1_type -466 2295 2187 2340 106 0 0 chr4 45957695 45957997 -156370350 - AluSx SINE Alu -10 302 1 2166 140 100 124 chr4 45957997 45958042 -156370305 - Charlie1 DNA MER1_type -574 2187 2142 782 180 156 47 chr4 45958069 45958280 -156370067 - Charlie1 DNA MER1_type -1034 1727 1494 283 211 19 0 chr4 45958290 45958342 -156370005 - Charlie1 DNA MER1_type -2708 53 1 413 75 0 0 chr4 45958495 45958548 -156369799 + MLT2A1 LTR ERVL 392 444 0 7774 74 8 0 chr4 45958548 45959523 -156368824 + HERVL-A1 LTR ERVL 1 983 -4671 * 29035 62 16 19 chr4 45959502 45963219 -156365128 + HERVL-A1 LTR ERVL 1659 5361 -293 1807 189 27 3 chr4 45963221 45963597 -156364750 + L1 LINE L1 4014 4398 -1748 319 151 0 14 chr4 45963597 45963659 -156364688 + Alu SINE Alu 1 44 -264 211 224 15 0 chr4 46013683 46013750 -156314597 + (TA)n Simple_repeat Simple_repeat 1 68 0 629 230 153 9 chr4 46014668 46014890 -156313457 + MIR SINE MIR 2 255 -7 478 305 107 30 chr4 46014909 46015106 -156313241 + MIR SINE MIR 36 247 -15 4182 139 39 53 chr4 46015471 46015531 -156312816 - L1P LINE L1 -766 5380 5321 2289 101 3 0 chr4 46015531 46015828 -156312519 - AluSp SINE Alu -15 298 1 4182 139 39 53 chr4 46015828 46016146 -156312201 - L1P LINE L1 -825 5321 5000 2248 101 3 19 chr4 46016146 46016462 -156311885 - AluSq SINE Alu -2 311 1 4182 139 39 53 chr4 46016462 46017029 -156311318 - L1P LINE L1 -1146 5000 4447 2346 114 0 0 chr4 46017246 46017553 -156310794 - AluSx SINE Alu -5 307 1 306 0 0 0 chr4 46017753 46017787 -156310560 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 406 278 35 26 chr4 46017874 46017989 -156310358 + L2 LINE L2 3196 3311 -2 21 0 0 0 chr4 46018092 46018113 -156310234 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr4 46018141 46018170 -156310177 + AT_rich Low_complexity Low_complexity 1 29 0 2205 101 0 16 chr4 46018699 46019006 -156309341 + AluSx SINE Alu 1 302 -10 216 0 0 0 chr4 46019009 46019033 -156309314 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 295 275 89 30 chr4 46019412 46019681 -156308666 - L1M4 LINE L1 -1608 4538 4254 522 263 93 111 chr4 46019866 46020679 -156307668 + L2 LINE L2 2511 3310 -3 2829 188 28 2 chr4 46020823 46021404 -156306943 + L1MB7 LINE L1 5570 6165 -19 2384 92 0 0 chr4 46024581 46024875 -156303472 - AluSg SINE Alu -16 294 1 705 193 133 0 chr4 46025384 46025550 -156302797 + MER5A DNA MER1_type 2 189 0 234 313 79 62 chr4 46025656 46025896 -156302451 + L2 LINE L2 1745 1988 -1326 21 0 0 0 chr4 46026373 46026394 -156301953 + AT_rich Low_complexity Low_complexity 1 21 0 1228 152 148 65 chr4 46029552 46029786 -156298561 + MER2 DNA MER2_type 1 269 -76 2217 118 0 9 chr4 46029786 46030101 -156298246 - AluSx SINE Alu 0 312 1 1228 152 148 65 chr4 46030101 46030176 -156298171 + MER2 DNA MER2_type 269 336 -9 180 128 0 103 chr4 46031214 46031253 -156297094 - MIR3 SINE MIR -42 166 132 22 0 0 0 chr4 46031941 46031963 -156296384 + AT_rich Low_complexity Low_complexity 1 22 0 387 325 179 16 chr4 46034364 46034817 -156293530 + L2 LINE L2 1977 2503 -811 * 582 253 114 12 chr4 46034815 46034981 -156293366 - L2 LINE L2 0 3313 3131 336 198 55 44 chr4 46035169 46035260 -156293087 - MIR SINE MIR -1 261 170 736 118 0 0 chr4 46035268 46035378 -156292969 - Alu SINE Alu -12 298 189 217 301 143 30 chr4 46035385 46035518 -156292829 + L2 LINE L2 3165 3312 -1 210 333 194 14 chr4 46036114 46036258 -156292089 + MIR SINE MIR 23 192 -70 618 311 79 9 chr4 46036266 46036494 -156291853 - MIR SINE MIR -6 256 13 2179 118 0 0 chr4 46036616 46036904 -156291443 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr4 46037458 46037479 -156290868 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr4 46038404 46038438 -156289909 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr4 46040820 46040843 -156287504 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 46041246 46041267 -156287080 + AT_rich Low_complexity Low_complexity 1 21 0 221 326 155 39 chr4 46042122 46042251 -156286096 - MIR3 SINE MIR -27 181 38 185 338 62 0 chr4 46045352 46045432 -156282915 + MIR SINE MIR 173 257 -5 2266 67 0 17 chr4 46045566 46045866 -156282481 + AluY SINE Alu 17 311 0 816 331 36 24 chr4 46046048 46046383 -156281964 + L3 LINE CR1 1038 1376 -201 26 64 0 0 chr4 46046944 46046991 -156281356 + AT_rich Low_complexity Low_complexity 1 47 0 260 350 38 27 chr4 46047188 46047374 -156280973 - MIR SINE MIR -46 216 29 26 0 0 0 chr4 46048370 46048396 -156279951 + AT_rich Low_complexity Low_complexity 1 26 0 27 49 0 0 chr4 46048683 46048724 -156279623 + AT_rich Low_complexity Low_complexity 1 41 0 304 171 45 0 chr4 46048730 46048818 -156279529 + (TA)n Simple_repeat Simple_repeat 2 93 0 2506 66 0 0 chr4 46050491 46050793 -156277554 - AluY SINE Alu -9 302 1 1369 225 44 19 chr4 46051319 46051684 -156276663 + MLT1A2 LTR MaLR 1 374 0 22 35 0 0 chr4 46052339 46052368 -156275979 + AT_rich Low_complexity Low_complexity 1 29 0 219 267 0 33 chr4 46053598 46053658 -156274689 + GA-rich Low_complexity Low_complexity 4 61 0 1530 269 170 11 chr4 46053665 46054324 -156274023 + L2 LINE L2 1719 2482 -832 820 298 28 92 chr4 46054296 46054733 -156273614 + L2 LINE L2 2804 3212 -101 * 1125 186 67 1 chr4 46054733 46055042 -156273305 + MLT1A1 LTR MaLR 1 364 -1 361 257 40 10 chr4 46055043 46055144 -156273203 + L2 LINE L2 3208 3311 -2 295 147 80 27 chr4 46056582 46056657 -156271690 - L1PA13 LINE L1 -11 6152 6074 2271 103 10 0 chr4 46056658 46056959 -156271388 - AluSg SINE Alu -2 308 5 2486 47 0 7 chr4 46056972 46057268 -156271079 - AluY SINE Alu -17 294 1 34 24 0 0 chr4 46061178 46061219 -156267128 + AT_rich Low_complexity Low_complexity 1 41 0 1397 190 123 3 chr4 46061972 46062282 -156266065 - MER7A DNA MER2_type 0 346 2 22 56 0 0 chr4 46062979 46063015 -156265332 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr4 46063506 46063537 -156264810 + AT_rich Low_complexity Low_complexity 1 31 0 247 279 108 62 chr4 46064096 46064225 -156264122 - MIR SINE MIR -79 183 49 21 0 0 0 chr4 46064278 46064299 -156264048 + AT_rich Low_complexity Low_complexity 1 21 0 2359 100 10 0 chr4 46065748 46066057 -156262290 + AluSx SINE Alu 1 312 0 259 238 213 12 chr4 46066815 46066895 -156261452 + L2 LINE L2 3214 3309 -4 323 226 71 58 chr4 46066960 46067115 -156261232 - L1ME LINE L1 -329 5792 5636 21 0 0 0 chr4 46068922 46068943 -156259404 + AT_rich Low_complexity Low_complexity 1 21 0 4277 60 24 24 chr4 46070224 46070811 -156257536 + L1PA12 LINE L1 5567 6153 -15 35 24 0 0 chr4 46071107 46071149 -156257198 + AT_rich Low_complexity Low_complexity 1 42 0 544 267 67 29 chr4 46071811 46072126 -156256221 + L1ME4a LINE L1 5758 6084 -37 287 313 110 87 chr4 46074804 46075104 -156253243 + L2 LINE L2 2962 3268 -4 319 308 69 25 chr4 46077789 46077948 -156250399 + MIR SINE MIR 86 251 -11 407 326 21 28 chr4 46079713 46079854 -156248493 + MIR3 SINE MIR 58 197 -11 334 315 87 0 chr4 46080354 46080481 -156247866 - L2 LINE L2 0 3313 3176 522 225 84 28 chr4 46080544 46080686 -156247661 + MIR SINE MIR 110 259 -3 311 284 148 18 chr4 46080730 46080899 -156247448 - L2 LINE L2 -239 3074 2884 349 328 52 0 chr4 46080997 46081131 -156247216 - L2 LINE L2 -663 2651 2511 335 208 57 9 chr4 46081229 46081335 -156247012 + Charlie5 DNA MER1_type 2436 2546 -66 222 267 82 30 chr4 46081532 46081681 -156246666 + MIR SINE MIR 66 262 0 308 273 136 0 chr4 46081722 46081832 -156246515 + MIR SINE MIR 26 150 -112 264 264 0 0 chr4 46082667 46082754 -156245593 - L1MC4 LINE L1 -1339 6703 6617 351 0 0 0 chr4 46083042 46083081 -156245266 + (CA)n Simple_repeat Simple_repeat 2 40 0 1073 216 97 22 chr4 46086679 46086998 -156241349 + MER2 DNA MER2_type 2 344 0 188 333 13 26 chr4 46088112 46088190 -156240157 + L3 LINE CR1 812 888 -689 413 179 295 58 chr4 46088242 46088398 -156239949 + L3 LINE CR1 1385 1577 0 668 265 60 19 chr4 46090314 46090529 -156237818 + L2 LINE L2 2381 2604 -710 410 230 40 0 chr4 46090536 46090636 -156237711 + MER5B DNA MER1_type 65 168 -10 289 266 75 20 chr4 46090670 46090818 -156237529 - MIR SINE MIR -64 144 10 561 217 63 57 chr4 46092360 46092535 -156235812 - MER5B DNA MER1_type 0 178 3 667 191 88 4 chr4 46094247 46094448 -156233899 + MER33 DNA MER1_type 1 218 -106 32 86 0 0 chr4 46094448 46094529 -156233818 + AT_rich Low_complexity Low_complexity 1 81 0 349 244 93 63 chr4 46094978 46095183 -156233164 + L1ME LINE L1 4498 4708 -1438 624 260 114 4 chr4 46095815 46096061 -156232286 + L1ME LINE L1 5479 5751 -370 403 237 32 11 chr4 46096134 46096227 -156232120 - L2 LINE L2 0 3313 3219 381 280 40 8 chr4 46096551 46096676 -156231671 - L2 LINE L2 0 3313 3185 468 138 154 49 chr4 46096757 46096880 -156231467 - L2 LINE L2 0 3313 3178 2403 104 34 14 chr4 46097827 46098184 -156230163 + THE1B LTR MaLR 1 364 0 1298 68 39 10 chr4 46098184 46098391 -156229956 + THE1B-int LTR MaLR 1 213 -1367 359 65 0 0 chr4 46098392 46098438 -156229909 + THE1A LTR MaLR 310 355 0 566 253 61 31 chr4 46098592 46098821 -156229526 + MLT1J LTR MaLR 231 466 -45 238 295 179 6 chr4 46098899 46099055 -156229292 + L2 LINE L2 2138 2320 -994 252 294 87 11 chr4 46099173 46099265 -156229082 + MER5A DNA MER1_type 7 105 -84 2429 91 67 3 chr4 46099488 46099830 -156228517 + THE1B LTR MaLR 1 364 0 183 204 23 0 chr4 46099833 46099877 -156228470 + L2 LINE L2 2827 2871 -443 588 98 22 11 chr4 46099886 46099978 -156228369 + THE1B LTR MaLR 272 364 0 885 254 206 24 chr4 46099981 46100394 -156227953 + L2 LINE L2 2826 3313 0 190 371 34 0 chr4 46100600 46100689 -156227658 + L3 LINE CR1 1478 1569 -8 546 220 176 6 chr4 46100908 46101067 -156227280 + MER5A DNA MER1_type 4 189 0 320 265 49 29 chr4 46101986 46102088 -156226259 - L2 LINE L2 -18 3254 3151 * 342 293 17 12 chr4 46102071 46102245 -156226102 + MIR SINE MIR 48 222 -40 193 301 151 11 chr4 46102939 46103032 -156225315 - L2 LINE L2 -10 3262 3157 381 312 138 42 chr4 46103792 46104177 -156224170 - L1M2 LINE L1 -5919 930 509 3752 156 70 39 chr4 46107404 46107700 -156220647 + L1MB8 LINE L1 4869 5154 -1024 2256 92 4 0 chr4 46107700 46108009 -156220338 + AluSx SINE Alu 3 312 0 3752 156 70 39 chr4 46108009 46108148 -156220199 + L1MB8 LINE L1 5154 5287 -891 1580 185 11 17 chr4 46108148 46108435 -156219912 + AluJb SINE Alu 13 297 -15 3752 156 70 39 chr4 46108435 46109271 -156219076 + L1MB8 LINE L1 5287 6177 -1 603 330 136 16 chr4 46109947 46110314 -156218033 + L2 LINE L2 2483 2893 -421 374 293 138 25 chr4 46110302 46110541 -156217806 + L2 LINE L2 3048 3313 0 * 25 31 0 0 chr4 46111298 46111330 -156217017 + AT_rich Low_complexity Low_complexity 1 32 0 638 204 20 13 chr4 46111511 46111663 -156216684 - L1MA10 LINE L1 -2 6332 6180 279 378 15 22 chr4 46111706 46111841 -156216506 - L2 LINE L2 -1 3312 3179 26 0 0 0 chr4 46112113 46112139 -156216208 + AT_rich Low_complexity Low_complexity 1 26 0 1279 96 0 0 chr4 46112325 46112482 -156215865 + AluSc SINE Alu 1 157 -152 2303 110 0 0 chr4 46112582 46112881 -156215466 + AluSc SINE Alu 5 303 -6 292 328 25 25 chr4 46114255 46114374 -156213973 + MIR3 SINE MIR 3 121 -87 780 251 16 5 chr4 46114379 46114566 -156213781 + MIR SINE MIR 7 195 -67 1690 156 7 0 chr4 46114617 46114887 -156213460 - AluSx SINE Alu -36 276 5 450 230 155 29 chr4 46115284 46115458 -156212889 - MLT1J LTR MaLR -16 495 300 401 241 28 28 chr4 46115549 46115694 -156212653 - MLT1J LTR MaLR -364 147 3 194 311 113 9 chr4 46116112 46116218 -156212129 - L2 LINE L2 -575 2739 2623 27 29 0 0 chr4 46116301 46116335 -156212012 + AT_rich Low_complexity Low_complexity 1 34 0 2082 201 181 2 chr4 46118321 46118963 -156209384 - L1MC4 LINE L1 -5 8037 7281 856 225 98 41 chr4 46120865 46121109 -156207238 + MIR SINE MIR 5 262 0 254 316 53 18 chr4 46121344 46121458 -156206889 - MIR SINE MIR -142 120 3 900 197 27 11 chr4 46121487 46121670 -156206677 - MER5A DNA MER1_type 0 189 4 2758 134 7 2 chr4 46122064 46122496 -156205851 + MER57B LTR ERV1 1 434 0 4250 130 18 5 chr4 46122496 46123159 -156205188 + MER57B-int LTR ERV1 1 672 -6865 3405 128 61 0 chr4 46123156 46123695 -156204652 + MER57B-int LTR ERV1 288 859 -5087 * 1315 154 5 0 chr4 46123678 46123886 -156204461 + MER57B-int LTR ERV1 1550 1758 -5779 * 5437 152 82 18 chr4 46123881 46126090 -156202257 + MER57B-int LTR ERV1 1505 4041 -1720 * 11392 104 105 59 chr4 46126081 46128212 -156200135 + MER57B-int LTR ERV1 5307 7535 -2 2549 157 14 0 chr4 46128213 46128641 -156199706 + MER57B LTR ERV1 1 434 0 582 299 57 7 chr4 46129592 46129873 -156198474 - MLT1L LTR MaLR -224 391 97 428 84 24 60 chr4 46129879 46129908 -156198439 + MADE1 DNA Mariner 1 30 -50 2770 192 32 68 chr4 46129908 46130623 -156197724 - LTR8 LTR ERV1 0 691 3 428 84 24 60 chr4 46130623 46130676 -156197671 + MADE1 DNA Mariner 30 80 0 231 130 26 130 chr4 46130696 46130773 -156197574 - MLT1L LTR MaLR -540 75 7 22 0 0 0 chr4 46131012 46131034 -156197313 + AT_rich Low_complexity Low_complexity 1 22 0 5364 175 22 13 chr4 46131800 46132912 -156195435 - L1P LINE L1 -1913 4233 3111 2052 78 9 96 chr4 46134435 46134769 -156193578 + AluSc SINE Alu 5 309 0 375 298 105 14 chr4 46134930 46135298 -156193049 + L1ME3A LINE L1 5457 5876 -294 301 262 79 8 chr4 46135915 46136041 -156192306 - MIR SINE MIR 0 262 128 943 194 12 0 chr4 46136416 46136581 -156191766 - AluSg/x SINE Alu -13 297 131 622 277 70 9 chr4 46136973 46137186 -156191161 - MIR SINE MIR -36 226 1 260 225 113 120 chr4 46138109 46138251 -156190096 - MIR SINE MIR -66 142 1 278 258 104 121 chr4 46138708 46138948 -156189399 - MIR SINE MIR -24 238 3 693 204 167 0 chr4 46139859 46140021 -156188326 + MER5A DNA MER1_type 1 189 0 472 292 73 36 chr4 46140021 46140205 -156188142 - MIR SINE MIR -46 216 26 43804 41 2 1 chr4 46140379 46146411 -156181936 - L1PA4 LINE L1 -113 6042 1 2939 126 94 97 chr4 46146413 46147128 -156181219 - Tigger3b DNA MER2_type -518 713 1 21 0 0 0 chr4 46147392 46147413 -156180934 + AT_rich Low_complexity Low_complexity 1 21 0 288 270 141 87 chr4 46147884 46148069 -156180278 + MER91A DNA MER1_type 1 195 -1 2249 113 3 3 chr4 46148196 46148507 -156179840 + AluSx SINE Alu 1 311 -1 2053 111 33 23 chr4 46149554 46149861 -156178486 - AluSx SINE Alu 0 312 3 1566 245 81 26 chr4 46150690 46151147 -156177200 - MLT1J LTR MaLR -25 486 5 334 322 98 80 chr4 46151834 46152098 -156176249 + L2 LINE L2 2305 2563 -751 2245 88 0 7 chr4 46152098 46152392 -156175955 - AluSq SINE Alu -21 292 1 334 322 98 80 chr4 46152392 46152788 -156175559 + L2 LINE L2 2563 2977 -337 198 191 0 0 chr4 46154743 46154790 -156173557 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1486 206 38 83 chr4 46154818 46155152 -156173195 + MER63B DNA MER1_type 10 321 -741 1981 133 0 16 chr4 46155152 46155461 -156172886 - AluSx SINE Alu -3 309 6 1486 206 38 83 chr4 46155461 46155573 -156172774 + MER63B DNA MER1_type 321 436 0 922 267 62 12 chr4 46156321 46156561 -156171786 + MIR SINE MIR 2 253 -9 391 183 98 0 chr4 46156563 46156645 -156171702 + MIR SINE MIR 172 261 -1 452 284 93 62 chr4 46157221 46157651 -156170696 - LTR33A LTR ERVL -24 499 3 2322 98 90 0 chr4 46158553 46158899 -156169448 - MER51B LTR ERV1 0 377 1 201 237 197 0 chr4 46158953 46159029 -156169318 + MIR SINE MIR 137 227 -35 309 51 0 0 chr4 46159068 46159107 -156169240 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 534 161 0 11 chr4 46159111 46159198 -156169149 - FRAM SINE Alu -30 146 61 863 265 96 35 chr4 46159198 46159698 -156168649 + MER41C LTR ERV1 3 557 0 464 207 0 11 chr4 46159699 46159786 -156168561 - AluSp SINE Alu -112 201 116 1748 192 178 28 chr4 46160342 46160626 -156167721 - LTR50 LTR ERVL -27 768 528 2061 151 19 19 chr4 46160626 46160991 -156167356 + MLT1A1 LTR MaLR 1 365 0 1748 192 178 28 chr4 46160991 46161329 -156167018 - LTR50 LTR ERVL -267 528 1 22 0 0 0 chr4 46161611 46161633 -156166714 + AT_rich Low_complexity Low_complexity 1 22 0 189 322 69 23 chr4 46161979 46162066 -156166281 - L2 LINE L2 0 3313 3223 371 318 128 12 chr4 46162069 46162327 -156166020 + MLT1L LTR MaLR 1 288 -327 1887 141 52 33 chr4 46162868 46163236 -156165111 - THE1C LTR MaLR 0 375 1 384 296 75 59 chr4 46163647 46163994 -156164353 + L1ME4a LINE L1 5310 5673 -448 439 188 0 0 chr4 46163994 46164079 -156164268 - L1PB4 LINE L1 -2 6154 6070 384 296 75 59 chr4 46164079 46164360 -156163987 + L1ME4a LINE L1 5673 5948 -173 286 211 0 13 chr4 46164407 46164483 -156163864 + L1ME4a LINE L1 6047 6121 0 1756 212 60 50 chr4 46165223 46165723 -156162624 - MLT1D LTR MaLR 0 505 1 256 169 39 65 chr4 46165737 46165814 -156162533 - L1ME4a LINE L1 -66 6055 5981 806 295 77 0 chr4 46166045 46166279 -156162068 - MIR SINE MIR 0 262 11 363 181 128 53 chr4 46166745 46166878 -156161469 + MLT1J LTR MaLR 369 511 0 184 328 128 15 chr4 46166900 46167095 -156161252 + L3 LINE CR1 1056 1272 -305 1759 192 74 42 chr4 46167204 46167636 -156160711 - MLT1C LTR MaLR 0 467 22 437 228 120 44 chr4 46167735 46167910 -156160437 + MLT1H LTR MaLR 230 428 -167 227 125 0 25 chr4 46167938 46167978 -156160369 + MLT1H LTR MaLR 474 512 -55 184 233 23 0 chr4 46168070 46168113 -156160234 + L3b LINE CR1 1538 1581 -2 229 372 0 0 chr4 46168136 46168222 -156160125 + L3 LINE CR1 1335 1420 -157 370 276 166 6 chr4 46169124 46169287 -156159060 - MIR SINE MIR -4 258 70 822 286 28 0 chr4 46170391 46170608 -156157739 - MIR SINE MIR -16 246 24 1809 146 6 37 chr4 46170616 46170938 -156157409 - AluSx SINE Alu 0 312 1 2801 128 18 87 chr4 46171835 46172436 -156155911 - L1MA7 LINE L1 0 6291 5732 2254 234 4 0 chr4 46172664 46173122 -156155225 + MLT1C LTR MaLR 1 460 -7 2296 109 29 55 chr4 46173122 46173507 -156154840 - THE1C LTR MaLR 0 375 1 416 100 0 0 chr4 46174280 46174340 -156154007 - Alu SINE Alu -18 292 233 187 317 8 75 chr4 46174693 46174813 -156153534 - L2 LINE L2 -2 3311 3200 2248 78 0 28 chr4 46175682 46176002 -156152345 + AluY SINE Alu 1 311 0 458 323 114 9 chr4 46176172 46176392 -156151955 + MIR SINE MIR 2 244 -18 541 266 82 11 chr4 46176740 46176924 -156151423 - LTR67 LTR ERVL -3 554 358 2267 76 10 0 chr4 46177046 46177337 -156151010 - AluSg SINE Alu -13 297 4 1150 193 36 129 chr4 46177481 46177862 -156150485 - L1MC5 LINE L1 -36 7925 7631 2180 120 13 0 chr4 46177862 46178171 -156150176 - AluSq SINE Alu 0 313 1 1150 193 36 129 chr4 46178171 46178454 -156149893 - L1MC5 LINE L1 -330 7631 7323 250 242 15 45 chr4 46178473 46178539 -156149808 - MIR3 SINE MIR -139 69 6 484 319 67 38 chr4 46179948 46180262 -156148085 + L1M4 LINE L1 2879 3201 -2945 5191 171 14 2 chr4 46180268 46181121 -156147226 + L1PA16 LINE L1 1 863 -5986 * 12549 197 42 15 chr4 46181115 46183321 -156145026 + L1PA16 LINE L1 1254 3401 -3468 189 0 0 0 chr4 46183321 46183342 -156145005 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 12549 197 42 15 chr4 46183342 46183566 -156144781 + L1PA16 LINE L1 3401 3618 -3251 243 0 0 0 chr4 46183566 46183593 -156144754 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 12549 197 42 15 chr4 46183593 46186629 -156141718 + L1PA16 LINE L1 3618 6860 -9 464 279 125 26 chr4 46186928 46187279 -156141068 + L1M4 LINE L1 3554 3939 -2207 195 321 4 4 chr4 46188248 46188334 -156140013 - MIR SINE MIR -66 142 56 1833 233 62 43 chr4 46189470 46190212 -156138135 + L1MC5 LINE L1 7035 7790 -171 444 275 70 112 chr4 46191313 46191571 -156136776 + MIR SINE MIR 2 248 -14 192 303 105 13 chr4 46191607 46191683 -156136664 + L2 LINE L2 2217 2299 -1015 3090 145 15 28 chr4 46192293 46192838 -156135509 - MER34 LTR ERV1 -4 538 1 946 240 203 69 chr4 46192926 46193272 -156135075 - L1MC4 LINE L1 -2 8040 7742 1939 151 0 0 chr4 46193272 46193556 -156134791 - AluSx SINE Alu -28 284 1 946 240 203 69 chr4 46193556 46193589 -156134758 - L1MC4 LINE L1 -300 7742 7715 180 0 0 0 chr4 46193589 46193609 -156134738 + (TA)n Simple_repeat Simple_repeat 2 21 0 946 240 203 69 chr4 46193609 46194073 -156134274 - L1MC4 LINE L1 -327 7715 6981 1922 126 7 0 chr4 46194331 46194602 -156133745 - AluSx SINE Alu -39 273 1 3262 131 15 9 chr4 46194874 46195400 -156132947 - Tigger3(Golem) DNA MER2_type -1 3028 2500 5586 45 0 3 chr4 46195400 46196086 -156132261 - L1PA4 LINE L1 0 6155 5472 410 154 13 0 chr4 46196363 46196441 -156131906 + (TG)n Simple_repeat Simple_repeat 2 80 0 361 193 114 0 chr4 46196488 46196576 -156131771 + MIR SINE MIR 117 214 -48 343 159 0 0 chr4 46197158 46197221 -156131126 + THE1B LTR MaLR 1 63 -301 415 91 61 15 chr4 46197321 46197387 -156130960 + L1M4c LINE L1 630 698 -5686 276 65 43 22 chr4 46197410 46197456 -156130891 + AluSc SINE Alu 87 133 -166 2399 76 3 3 chr4 46197456 46197757 -156130590 + AluY SINE Alu 1 301 -10 1895 118 29 46 chr4 46197766 46198072 -156130275 + AluSx SINE Alu 2 302 -10 1930 160 14 0 chr4 46198072 46198429 -156129918 + L1M4c LINE L1 892 1253 -5131 1907 126 18 24 chr4 46198577 46198679 -156129668 - L1MA5A LINE L1 -6 6291 6190 5077 63 17 5 chr4 46198679 46199331 -156129016 - PABL_A LTR ERV1 0 660 1 1907 126 18 24 chr4 46199331 46199562 -156128785 - L1MA5A LINE L1 -107 6190 5960 588 196 9 0 chr4 46199571 46199678 -156128669 - AluSc SINE Alu -53 256 149 968 130 4 145 chr4 46199678 46199853 -156128494 - L1MA5A LINE L1 -325 5972 5845 1719 188 0 10 chr4 46199853 46200145 -156128202 - AluJb SINE Alu -23 289 1 968 130 4 145 chr4 46200145 46200231 -156128116 - L1MA5A LINE L1 -452 5845 5748 2921 78 90 0 chr4 46200403 46200816 -156127531 - L1P3 LINE L1 -390 5782 5333 238 353 48 60 chr4 46200840 46200859 -156127488 + MIR SINE MIR 81 99 -163 2271 191 65 63 chr4 46200859 46201462 -156126885 - MER77 LTR ERV1 0 605 2 238 353 48 60 chr4 46201462 46201609 -156126738 + MIR SINE MIR 99 245 -17 3527 223 23 6 chr4 46201769 46202739 -156125608 + L1M4 LINE L1 4444 5428 -743 2277 157 20 3 chr4 46202756 46203416 -156124931 + L1P5 LINE L1 4934 5605 -546 219 69 0 0 chr4 46203905 46203934 -156124413 + (TC)n Simple_repeat Simple_repeat 2 30 0 254 289 13 40 chr4 46204256 46204332 -156124015 + MIR3 SINE MIR 129 202 -6 665 55 0 11 chr4 46204368 46204459 -156123888 + (GGAA)n Simple_repeat Simple_repeat 1 90 0 232 344 0 0 chr4 46205192 46205282 -156123065 + MER117 DNA MER1_type 1 90 -107 350 210 65 101 chr4 46205536 46205623 -156122724 - L2 LINE L2 -5 3308 3226 2271 110 0 0 chr4 46205623 46205922 -156122425 + AluSq SINE Alu 1 299 -14 350 210 65 101 chr4 46205922 46205972 -156122375 - L2 LINE L2 -87 3226 3176 234 280 140 45 chr4 46206456 46206656 -156121691 - MLT1L LTR MaLR -18 597 379 22 0 0 0 chr4 46207051 46207073 -156121274 + AT_rich Low_complexity Low_complexity 1 22 0 284 360 58 53 chr4 46207219 46207636 -156120711 + L2 LINE L2 2852 3270 -2 381 43 0 0 chr4 46208002 46208049 -156120298 + (CA)n Simple_repeat Simple_repeat 1 47 0 489 300 95 14 chr4 46208472 46208682 -156119665 - MLT1L LTR MaLR -84 531 305 313 185 0 46 chr4 46208825 46208890 -156119457 - MLT1L LTR MaLR -553 62 1 190 385 48 29 chr4 46210217 46210321 -156118026 + MIR3 SINE MIR 8 113 -95 2199 209 18 12 chr4 46210323 46210826 -156117521 - L1MB7 LINE L1 0 6184 5679 239 371 65 24 chr4 46211101 46211271 -156117076 - L2 LINE L2 0 3272 3096 3320 67 30 0 chr4 46211664 46212095 -156116252 - MLT2A1 LTR ERVL 0 444 1 259 172 94 0 chr4 46212885 46212949 -156115398 - L1PA10 LINE L1 -12 6156 6087 6721 126 1 0 chr4 46213053 46214094 -156114253 - L1P LINE L1 -852 5294 4253 245 394 21 16 chr4 46214194 46214387 -156113960 + L2 LINE L2 1158 1351 -1963 381 239 11 0 chr4 46214517 46214605 -156113742 + L1P LINE L1 4801 4889 -1257 1028 275 86 48 chr4 46214704 46215021 -156113326 + LTR33 LTR ERVL 1 345 -176 2068 142 3 7 chr4 46215021 46215331 -156113016 - AluSx SINE Alu -3 309 1 1028 275 86 48 chr4 46215331 46215515 -156112832 + LTR33 LTR ERVL 345 521 0 991 208 80 109 chr4 46215550 46216026 -156112321 + LTR37B LTR ERV1 7 468 0 283 315 55 42 chr4 46216198 46216363 -156111984 + L2 LINE L2 1776 1942 -1372 38 22 0 0 chr4 46216410 46216455 -156111892 + AT_rich Low_complexity Low_complexity 1 45 0 3960 113 3 18 chr4 46216562 46216725 -156111622 + L1PA16 LINE L1 5512 5676 -490 1730 171 10 23 chr4 46216725 46217029 -156111318 + AluJo SINE Alu 3 302 -10 3960 113 3 18 chr4 46217029 46217467 -156110880 + L1PA16 LINE L1 5676 6104 -62 556 270 0 0 chr4 46217471 46217586 -156110761 - FLAM_A SINE Alu -18 115 1 251 343 176 27 chr4 46217712 46218263 -156110084 + L2 LINE L2 2251 2883 -431 21 0 0 0 chr4 46218376 46218397 -156109950 + AT_rich Low_complexity Low_complexity 1 21 0 1541 256 14 26 chr4 46218471 46218897 -156109450 + LTR40c LTR ERVL 23 443 -22 267 372 80 15 chr4 46219343 46219480 -156108867 - L2 LINE L2 0 3272 3127 251 250 23 0 chr4 46219680 46219768 -156108579 + L1MC4 LINE L1 6614 6703 -1339 192 176 44 0 chr4 46219829 46219897 -156108450 + (TA)n Simple_repeat Simple_repeat 2 72 0 297 0 0 0 chr4 46220001 46220034 -156108313 + (TA)n Simple_repeat Simple_repeat 2 34 0 2092 109 0 64 chr4 46221185 46221514 -156106833 - AluSx SINE Alu -4 308 1 2557 48 0 13 chr4 46221835 46222146 -156106201 + AluY SINE Alu 1 307 -4 15253 197 16 6 chr4 46222177 46226944 -156101403 + L1P5 LINE L1 3 4720 -2147 213 39 0 0 chr4 46226944 46226970 -156101377 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 15253 197 16 6 chr4 46226970 46227356 -156100991 + L1P5 LINE L1 4720 5101 -1766 2176 82 11 11 chr4 46227356 46227698 -156100649 + AluY SINE Alu 1 342 0 15253 197 16 6 chr4 46227698 46228694 -156099653 + L1P5 LINE L1 5101 6507 -360 246 221 70 12 chr4 46228676 46228762 -156099585 - L1MC4 LINE L1 -1337 6705 6615 * 259 319 24 0 chr4 46228795 46228961 -156099386 + (TATATG)n Simple_repeat Simple_repeat 5 174 0 327 83 4 0 chr4 46228961 46229019 -156099328 - L1ME LINE L1 -323 5828 5783 275 158 0 18 chr4 46229022 46229079 -156099268 + (TA)n Simple_repeat Simple_repeat 1 56 0 231 154 0 64 chr4 46229421 46229499 -156098848 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 236 247 0 0 chr4 46229515 46229588 -156098759 - L1MCa LINE L1 -4359 2067 1995 260 209 0 15 chr4 46229592 46229659 -156098688 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 200 135 0 27 chr4 46229686 46229723 -156098624 + (TA)n Simple_repeat Simple_repeat 2 37 0 302 298 12 0 chr4 46229747 46229831 -156098516 - L1MC4 LINE L1 -1344 6698 6614 2523 109 0 11 chr4 46229832 46230199 -156098148 + L1PB1 LINE L1 5782 6144 -7 22 35 0 0 chr4 46230401 46230430 -156097917 + AT_rich Low_complexity Low_complexity 1 29 0 352 287 55 25 chr4 46230518 46230720 -156097627 + L1MC4 LINE L1 6799 7006 -1036 1807 163 46 30 chr4 46230781 46231150 -156097197 - THE1C LTR MaLR 0 375 1 240 86 0 0 chr4 46231255 46231290 -156097057 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 82 0 0 chr4 46231569 46231618 -156096729 + AT_rich Low_complexity Low_complexity 1 49 0 549 280 109 0 chr4 46233383 46233558 -156094789 + MIR SINE MIR 69 262 0 218 279 82 49 chr4 46233571 46233693 -156094654 - MIR SINE MIR -46 216 91 433 317 152 6 chr4 46234729 46234893 -156093454 + MER5A DNA MER1_type 2 189 0 1075 210 66 68 chr4 46235361 46235727 -156092620 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr4 46235869 46235890 -156092457 + AT_rich Low_complexity Low_complexity 1 21 0 358 332 37 80 chr4 46236073 46236450 -156091897 - L2 LINE L2 -16 3256 2896 22 0 0 0 chr4 46237008 46237030 -156091317 + AT_rich Low_complexity Low_complexity 1 22 0 198 349 128 0 chr4 46237106 46237215 -156091132 + L2 LINE L2 3189 3311 -2 844 258 9 9 chr4 46237670 46237883 -156090464 + MER69 DNA AcHobo 75 287 -939 7382 242 35 30 chr4 46238144 46239080 -156089267 - L1PA12 LINE L1 -2736 4848 3918 312 91 0 0 chr4 46239080 46239124 -156089223 + (TATG)n Simple_repeat Simple_repeat 2 45 0 318 67 0 0 chr4 46239124 46239169 -156089178 + (CA)n Simple_repeat Simple_repeat 2 46 0 7382 242 35 30 chr4 46239169 46240081 -156088266 - L1PA12 LINE L1 -3666 3918 3012 2013 166 54 54 chr4 46240081 46240509 -156087838 + MSTA LTR MaLR 1 428 0 7382 242 35 30 chr4 46240509 46243188 -156085159 - L1PA12 LINE L1 -4572 3012 32 2455 163 26 5 chr4 46243742 46244159 -156084188 + MSTB LTR MaLR 1 426 0 945 355 29 12 chr4 46244260 46244739 -156083608 + HERVL LTR ERVL 3850 4336 -1318 231 242 15 0 chr4 46244799 46244865 -156083482 + MLT1G LTR MaLR 517 583 -7 238 391 20 10 chr4 46245027 46245156 -156083191 + MLT1G-int LTR MaLR 285 418 -953 2119 130 141 5 chr4 46245156 46245532 -156082815 - MSTA LTR MaLR 0 428 2 238 391 20 10 chr4 46245532 46245599 -156082748 + MLT1G-int LTR MaLR 418 483 -888 192 170 57 38 chr4 46245941 46245994 -156082353 - L2 LINE L2 -113 3200 3147 804 156 7 0 chr4 46246039 46246180 -156082167 - LTR47B LTR ERVL -1 442 301 10193 38 1 1 chr4 46246205 46247513 -156080834 - L1PA5 LINE L1 -1596 4550 3243 7482 40 1 0 chr4 46247513 46249094 -156079253 + L1PA5 LINE L1 4570 6151 -3 521 243 72 18 chr4 46249103 46249325 -156079022 - L1MC5 LINE L1 -60 7901 7668 24 0 0 0 chr4 46251803 46251827 -156076520 + AT_rich Low_complexity Low_complexity 1 24 0 277 318 54 0 chr4 46253835 46254077 -156074270 - L1M4 LINE L1 -824 5322 5068 655 323 104 10 chr4 46254247 46254650 -156073697 - L1M4 LINE L1 -1308 4838 4398 2394 71 3 13 chr4 46254802 46255110 -156073237 - AluY SINE Alu -6 305 1 285 350 57 24 chr4 46255155 46255524 -156072823 - L1M4 LINE L1 -2017 4129 3749 385 267 170 0 chr4 46255528 46255663 -156072684 + MIR SINE MIR 84 241 -21 1397 208 78 40 chr4 46255875 46256274 -156072073 - MLT1C LTR MaLR -1 466 53 21 36 0 0 chr4 46256394 46256422 -156071925 + AT_rich Low_complexity Low_complexity 1 28 0 848 141 0 15 chr4 46256422 46256557 -156071790 - FLAM_C SINE Alu 0 133 1 1466 231 30 68 chr4 46256558 46256998 -156071349 - L1MC/D LINE L1 -743 5403 4948 2449 133 44 7 chr4 46256998 46257411 -156070936 - MSTA LTR MaLR 0 428 1 7767 161 50 39 chr4 46257411 46258972 -156069375 - MSTA-int LTR MaLR 0 1580 3 2436 146 44 5 chr4 46258974 46259386 -156068961 - MSTA LTR MaLR 0 428 1 1466 231 30 68 chr4 46259386 46260012 -156068335 - L1MC/D LINE L1 -1198 4948 4464 241 273 23 0 chr4 46260022 46260110 -156068237 - HAL1 LINE L1 -975 1532 1443 400 149 0 81 chr4 46260240 46260327 -156068020 - MLT1C LTR MaLR -285 80 1 190 104 21 42 chr4 46260478 46260526 -156067821 + (CATA)n Simple_repeat Simple_repeat 2 48 0 384 285 15 65 chr4 46260532 46260748 -156067599 - L1MDa LINE L1 -5060 1470 1257 2498 81 0 0 chr4 46261232 46261542 -156066805 - AluY SINE Alu -1 310 1 511 336 199 10 chr4 46262929 46263397 -156064950 - L2 LINE L2 -13 3300 2750 218 324 14 0 chr4 46263396 46263470 -156064877 + L2 LINE L2 2490 2564 -750 * 5942 104 15 35 chr4 46263545 46264820 -156063527 - L1PA13 LINE L1 -5 6158 4892 3609 212 133 9 chr4 46264845 46265777 -156062570 - L1PA13 LINE L1 -5659 1128 81 1981 302 157 23 chr4 46265799 46267133 -156061214 - L2 LINE L2 -575 2739 1227 1513 300 92 28 chr4 46267155 46267805 -156060542 + MER115 DNA AcHobo 2 693 0 988 187 56 0 chr4 46267826 46268024 -156060323 + MER3 DNA MER1_type 1 209 0 387 286 98 79 chr4 46269143 46269614 -156058733 - L2 LINE L2 -263 3009 2530 761 193 25 109 chr4 46269618 46269641 -156058706 - MER20 DNA MER1_type 0 219 196 1627 156 50 102 chr4 46269641 46270025 -156058322 - THE1B LTR MaLR 0 364 1 761 193 25 109 chr4 46270025 46270239 -156058108 - MER20 DNA MER1_type -23 196 2 534 307 191 48 chr4 46270273 46271049 -156057298 - L2 LINE L2 -814 2500 1614 519 258 113 48 chr4 46271156 46271385 -156056962 - MIR SINE MIR -1 261 18 233 227 0 0 chr4 46272035 46272079 -156056268 + (TG)n Simple_repeat Simple_repeat 2 45 0 366 171 0 0 chr4 46272493 46272563 -156055784 + A-rich Low_complexity Low_complexity 1 70 0 306 0 0 0 chr4 46272929 46272963 -156055384 + (T)n Simple_repeat Simple_repeat 1 34 0 1329 208 13 20 chr4 46273066 46273561 -156054786 - L1PA15-16 LINE L1 -3670 2476 1989 25 31 0 0 chr4 46273953 46273985 -156054362 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr4 46275091 46275114 -156053233 + AT_rich Low_complexity Low_complexity 1 23 0 850 213 16 86 chr4 46275656 46275970 -156052377 + MLT1A1 LTR MaLR 4 295 -70 228 111 0 0 chr4 46276861 46276897 -156051450 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 1451 247 55 13 chr4 46277132 46277609 -156050738 + L1MC4 LINE L1 7102 7598 -444 464 309 102 37 chr4 46277789 46278083 -156050264 - L1PA15-16 LINE L1 -632 1875 1563 1790 116 45 116 chr4 46278964 46279368 -156048979 - THE1C LTR MaLR 0 375 1 2123 130 52 11 chr4 46279374 46279743 -156048604 - THE1C-int LTR MaLR -6 1574 1191 265 320 55 6 chr4 46280196 46280377 -156047970 + Charlie8 DNA MER1_type 75 264 -2153 1932 172 34 3 chr4 46282147 46282501 -156045846 + MLT1A1 LTR MaLR 1 365 0 1387 303 43 53 chr4 46283133 46283714 -156044633 - MER115 DNA AcHobo -3 690 116 7886 128 34 14 chr4 46285523 46286841 -156041506 - THE1C-int LTR MaLR -234 1346 2 1661 155 64 64 chr4 46286842 46287217 -156041130 - THE1C LTR MaLR 0 375 1 462 304 54 0 chr4 46287217 46287421 -156040926 - Tigger8 DNA MER2_type -301 365 151 188 423 21 0 chr4 46288012 46288109 -156040238 + L2 LINE L2 2828 2926 -387 665 251 87 27 chr4 46288165 46288384 -156039963 - MIR SINE MIR -30 232 1 367 255 64 11 chr4 46288826 46288920 -156039427 - L2 LINE L2 0 3313 3215 1853 136 69 30 chr4 46289700 46290061 -156038286 + THE1C LTR MaLR 1 375 0 187 326 170 7 chr4 46290179 46290320 -156038027 - L2 LINE L2 -527 2787 2624 218 96 58 39 chr4 46290515 46290567 -156037780 + T-rich Low_complexity Low_complexity 2 54 0 241 284 0 27 chr4 46290644 46290718 -156037629 + MER63 DNA MER1_type 677 748 -312 497 137 0 0 chr4 46290738 46290811 -156037536 + LTR32 LTR ERVL 15 87 -384 252 59 29 0 chr4 46290792 46290826 -156037521 + LTR32 LTR ERVL 15 49 -422 * 1434 165 13 0 chr4 46290827 46291063 -156037284 + LTR32 LTR ERVL 233 471 0 270 330 0 10 chr4 46291729 46291832 -156036515 + HERVL LTR ERVL 3408 3509 -2145 711 348 68 30 chr4 46291847 46292569 -156035778 + HERVL LTR ERVL 4575 5323 -441 610 239 61 15 chr4 46292832 46293029 -156035318 + LTR16A1 LTR ERVL 251 456 -1 287 308 75 30 chr4 46293159 46293292 -156035055 + MIR SINE MIR 120 258 -4 292 313 138 0 chr4 46294347 46294507 -156033840 + MLT1L LTR MaLR 362 543 -72 541 318 64 17 chr4 46295285 46295518 -156032829 - MIR SINE MIR 0 262 19 2156 72 22 4 chr4 46296413 46296689 -156031658 + AluY SINE Alu 28 308 -3 1687 84 13 4 chr4 46297139 46297378 -156030969 - L1PA11 LINE L1 -4 6170 5930 1749 78 4 0 chr4 46297378 46297608 -156030739 + L1PA11 LINE L1 5665 5895 -279 21 0 0 0 chr4 46297951 46297972 -156030375 + AT_rich Low_complexity Low_complexity 1 21 0 295 247 0 13 chr4 46298111 46298188 -156030159 - MLT1H LTR MaLR -388 161 86 2017 202 103 19 chr4 46298309 46298775 -156029572 + MLT1D LTR MaLR 1 505 0 209 330 149 0 chr4 46300629 46300723 -156027624 + L2 LINE L2 3163 3270 -2 317 269 106 19 chr4 46301291 46301395 -156026952 + MIR SINE MIR 147 259 -3 414 39 0 0 chr4 46302031 46302083 -156026264 + (TAA)n Simple_repeat Simple_repeat 3 54 0 23 54 0 0 chr4 46302902 46302939 -156025408 + AT_rich Low_complexity Low_complexity 1 37 0 214 313 10 52 chr4 46303292 46303388 -156024959 - MER5B DNA MER1_type 0 178 87 257 253 69 0 chr4 46304303 46304390 -156023957 + MER91B DNA MER1_type 1 96 -44 367 328 0 8 chr4 46307479 46307598 -156020749 - 7SK RNA RNA -68 125 8 274 225 147 0 chr4 46307792 46307921 -156020426 - L1ME4a LINE L1 -1 6120 5973 393 265 47 74 chr4 46307994 46308302 -156020045 + MLT1J2 LTR MaLR 102 448 -2 372 335 71 22 chr4 46308321 46308727 -156019620 - L1ME4a LINE L1 -209 5912 5487 13659 142 57 2 chr4 46308727 46309670 -156018677 - Tigger1 DNA MER2_type 0 2418 1528 1787 159 3 38 chr4 46309670 46309984 -156018363 + AluJb SINE Alu 1 303 -9 13659 142 57 2 chr4 46309984 46311330 -156017017 - Tigger1 DNA MER2_type -890 1528 3 204 40 0 0 chr4 46311547 46311572 -156016775 + (GA)n Simple_repeat Simple_repeat 2 26 0 8751 192 33 21 chr4 46312268 46314363 -156013984 + L1MA4A LINE L1 1804 3955 -2893 1820 180 10 0 chr4 46314363 46314668 -156013679 + AluJo SINE Alu 3 310 -2 8751 192 33 21 chr4 46314668 46315761 -156012586 + L1MA4A LINE L1 3955 5033 -1815 5450 134 20 4 chr4 46315861 46317011 -156011336 + L1MA4A LINE L1 5700 7005 0 565 259 98 10 chr4 46318377 46318570 -156009777 + MIR SINE MIR 5 214 -48 2080 130 3 0 chr4 46318707 46318999 -156009348 + AluSx SINE Alu 1 293 -19 190 333 0 29 chr4 46319103 46319172 -156009175 - L2 LINE L2 -2 3270 3204 320 196 0 0 chr4 46321433 46321484 -156006863 - Alu SINE Alu -251 51 1 410 210 153 24 chr4 46322565 46322689 -156005658 + HsTC2 DNA Tc2 1 140 -1758 * 1610 235 16 25 chr4 46322686 46323132 -156005215 + HsTC2 DNA Tc2 1283 1900 0 212 321 12 12 chr4 46324338 46324422 -156003925 - L2 LINE L2 0 3313 3230 21 36 0 0 chr4 46325686 46325714 -156002633 + AT_rich Low_complexity Low_complexity 1 28 0 287 300 3 0 chr4 46326025 46326121 -156002226 + L1ME LINE L1 5614 5711 -450 305 172 16 0 chr4 46326681 46326745 -156001602 - L1ME1 LINE L1 -12 6154 6090 281 281 116 16 chr4 46329131 46329252 -155999095 + MIR SINE MIR 9 141 -121 231 304 13 0 chr4 46329253 46329332 -155999015 - MER116 DNA Mariner 0 80 1 322 288 84 63 chr4 46330360 46330551 -155997796 + L2 LINE L2 3115 3309 -4 21 0 0 0 chr4 46330590 46330611 -155997736 + AT_rich Low_complexity Low_complexity 1 21 0 180 343 14 14 chr4 46331248 46331318 -155997029 + MIR SINE MIR 17 86 -122 328 279 18 9 chr4 46331983 46332094 -155996253 - MER20B DNA MER1_type 0 783 672 678 247 85 17 chr4 46332108 46332336 -155996011 + MER46C DNA MER2_type 5 248 -90 336 102 41 0 chr4 46332336 46332385 -155995962 - THE1C LTR MaLR 0 375 325 2019 88 33 0 chr4 46332386 46332660 -155995687 - THE1C LTR MaLR 0 375 93 807 186 23 121 chr4 46332793 46333057 -155995290 + MLT1B LTR MaLR 8 245 -145 315 0 0 0 chr4 46333157 46333192 -155995155 + (T)n Simple_repeat Simple_repeat 1 35 0 197 275 44 44 chr4 46334499 46334590 -155993757 + MIR SINE MIR 79 169 -93 1956 305 109 28 chr4 46334598 46335974 -155992373 - L2 LINE L2 -2 3311 1829 550 282 107 48 chr4 46336208 46336289 -155992058 + MLT1L LTR MaLR 143 218 -397 2795 89 54 14 chr4 46336289 46336716 -155991631 - MLT2A1 LTR ERVL 0 444 1 550 282 107 48 chr4 46336716 46336925 -155991422 + MLT1L LTR MaLR 218 450 -165 391 223 97 19 chr4 46337075 46337178 -155991169 - MIR SINE MIR -119 143 33 180 329 53 47 chr4 46337499 46337669 -155990678 - MIR SINE MIR -1 261 91 240 226 97 11 chr4 46337790 46337883 -155990464 + L1ME4a LINE L1 5949 6049 -72 5640 80 1 1 chr4 46337976 46339216 -155989131 - L1P3 LINE L1 -335 5819 4580 232 351 35 35 chr4 46339336 46339507 -155988840 + MIR SINE MIR 91 261 -1 1650 63 0 0 chr4 46339681 46339887 -155988460 + L1PA7 LINE L1 5935 6140 -14 313 198 17 112 chr4 46341023 46341139 -155987208 - L1ME LINE L1 -310 5811 5707 985 259 9 4 chr4 46341156 46341388 -155986959 - MIR SINE MIR -1 261 29 375 320 98 39 chr4 46341404 46341710 -155986637 - L1ME LINE L1 -438 5683 5360 232 303 40 0 chr4 46341721 46341797 -155986550 + MIR SINE MIR 155 233 -29 1050 187 83 0 chr4 46341797 46342038 -155986309 - MER93b LTR ERV1 0 373 113 3191 172 70 42 chr4 46342069 46342801 -155985546 + MER21B LTR ERV1 111 862 -1 516 92 0 13 chr4 46342801 46342877 -155985470 - MER93b LTR ERV1 -298 75 1 250 204 41 0 chr4 46342992 46343041 -155985306 - MER2 DNA MER2_type -15 330 280 978 174 0 46 chr4 46343089 46343132 -155985215 - MER2 DNA MER2_type -136 209 166 15017 136 57 12 chr4 46343132 46345744 -155982603 - Tigger4(Zombi) DNA MER2_type 0 2731 2 978 174 0 46 chr4 46345744 46345919 -155982428 - MER2 DNA MER2_type -179 166 1 2209 117 32 32 chr4 46346612 46346987 -155981360 - THE1C LTR MaLR 0 375 1 248 276 66 21 chr4 46347200 46347248 -155981099 - MIR SINE MIR -20 242 198 2497 124 6 0 chr4 46347248 46347610 -155980737 + THE1B LTR MaLR 1 364 0 10922 106 8 25 chr4 46347610 46349218 -155979129 + THE1B-int LTR MaLR 1 1580 0 2715 110 0 0 chr4 46349218 46349582 -155978765 + THE1B LTR MaLR 1 364 0 248 276 66 21 chr4 46349582 46349706 -155978641 - MIR SINE MIR -63 199 13 242 279 0 0 chr4 46349805 46349866 -155978481 - L2 LINE L2 -15 3298 3238 251 282 226 28 chr4 46349942 46350123 -155978224 - MIR SINE MIR 0 262 46 432 0 0 0 chr4 46350359 46350407 -155977940 + (CA)n Simple_repeat Simple_repeat 2 49 0 200 316 0 53 chr4 46350911 46350987 -155977360 + MIR SINE MIR 80 151 -111 1117 265 79 18 chr4 46351106 46351290 -155977057 + MLT1H1 LTR MaLR 200 371 -184 2054 197 0 0 chr4 46351290 46351655 -155976692 + MLT1A1 LTR MaLR 1 365 0 1117 265 79 18 chr4 46351655 46351798 -155976549 + MLT1H1 LTR MaLR 371 547 -8 208 129 0 0 chr4 46351823 46351854 -155976493 + MIR SINE MIR 232 262 0 201 253 86 81 chr4 46351856 46352030 -155976317 - L2 LINE L2 -18 3295 3121 259 307 29 71 chr4 46352165 46352225 -155976122 - MIR SINE MIR -103 159 98 2214 193 49 28 chr4 46352225 46352732 -155975615 - LTR53 LTR ERVL 0 519 2 259 307 29 71 chr4 46352732 46352811 -155975536 - MIR SINE MIR -164 98 26 279 250 0 0 chr4 46352972 46353032 -155975315 + L1MD3 LINE L1 7869 7928 -67 995 245 26 40 chr4 46353137 46353410 -155974937 + L2 LINE L2 961 1229 -2085 2087 285 70 16 chr4 46353424 46354193 -155974154 + L2 LINE L2 1817 2627 -687 431 314 64 40 chr4 46354389 46354717 -155973630 + LTR16C LTR ERVL 156 491 0 1185 271 45 59 chr4 46354717 46355417 -155972930 + L2 LINE L2 2624 3313 0 273 397 30 0 chr4 46355941 46356072 -155972275 + L2 LINE L2 3129 3263 -9 649 284 15 46 chr4 46356153 46356414 -155971933 - Charlie2 DNA MER1_type -2528 254 2 378 299 9 28 chr4 46356419 46356526 -155971821 + L2 LINE L2 3168 3272 0 1944 172 19 14 chr4 46357448 46357809 -155970538 + MLT1A1 LTR MaLR 1 363 -2 2274 92 0 10 chr4 46358172 46358477 -155969870 + AluY SINE Alu 1 302 -9 435 318 13 26 chr4 46359846 46359997 -155968350 - MER5B DNA MER1_type -29 149 1 1985 240 111 72 chr4 46360987 46362164 -155966183 + MER69B DNA AcHobo 3 1225 -1 281 222 0 0 chr4 46362404 46362458 -155965889 - MIR SINE MIR -51 211 158 199 253 0 101 chr4 46362579 46362658 -155965689 + MIR SINE MIR 122 192 -70 8787 187 27 27 chr4 46363360 46366484 -155961863 - L1PA16 LINE L1 0 6166 3046 1842 149 0 40 chr4 46366484 46366786 -155961561 - AluJb SINE Alu -22 290 1 8787 187 27 27 chr4 46366786 46366863 -155961484 - L1PA16 LINE L1 -3120 3046 2971 1078 236 16 19 chr4 46366883 46367197 -155961150 - L1PA16 LINE L1 -3417 2729 2417 268 268 0 16 chr4 46367299 46367422 -155960925 + (CATA)n Simple_repeat Simple_repeat 2 122 0 * 341 95 16 0 chr4 46367421 46367484 -155960863 + (GA)n Simple_repeat Simple_repeat 2 65 0 461 305 34 50 chr4 46367706 46367945 -155960402 + HAL1 LINE L1 1113 1347 -1160 2578 163 29 2 chr4 46369834 46370283 -155958064 + MLT1C LTR MaLR 5 465 -2 192 385 0 18 chr4 46371168 46371277 -155957070 - MIR SINE MIR 0 262 156 2970 237 57 10 chr4 46371716 46372008 -155956339 - L1ME1 LINE L1 -292 5874 5597 2249 130 0 0 chr4 46372008 46372316 -155956031 + AluSg SINE Alu 1 308 -2 2970 237 57 10 chr4 46372316 46373551 -155954796 - L1ME1 LINE L1 -569 5597 4269 321 329 129 30 chr4 46373612 46373946 -155954401 - L2 LINE L2 -821 2493 2127 2276 102 0 3 chr4 46374288 46374583 -155953764 + AluSx SINE Alu 1 294 -18 257 273 55 62 chr4 46376388 46376516 -155951831 + MIR3 SINE MIR 71 197 -11 332 289 118 7 chr4 46377053 46377188 -155951159 + MIR SINE MIR 53 202 -60 2231 74 0 14 chr4 46377433 46377789 -155950558 + AluSc SINE Alu 1 352 0 242 274 24 12 chr4 46378957 46379041 -155949306 + MER20B DNA MER1_type 6 90 -693 473 232 20 66 chr4 46379219 46379370 -155948977 + MER20B DNA MER1_type 338 481 -302 303 383 0 8 chr4 46379616 46379736 -155948611 - MIR SINE MIR -112 150 32 520 257 20 118 chr4 46379784 46380080 -155948267 - L2 LINE L2 -1 3312 3046 462 239 8 62 chr4 46381498 46381628 -155946719 + L2 LINE L2 3190 3312 -1 188 375 0 12 chr4 46382079 46382159 -155946188 - L2 LINE L2 0 3313 3235 795 216 216 42 chr4 46383017 46383304 -155945043 - LTR16C LTR ERVL 0 491 155 1051 208 131 67 chr4 46383772 46384223 -155944124 - MER74B LTR ERVL -74 548 69 592 314 21 5 chr4 46385027 46385227 -155943120 - MIR SINE MIR -32 230 23 290 281 231 29 chr4 46385845 46386029 -155942318 + MIR SINE MIR 38 256 -6 1284 173 18 14 chr4 46386790 46387000 -155941347 - L1MA8 LINE L1 -1 6290 6077 2544 77 46 6 chr4 46387000 46387350 -155940997 - THE1B LTR MaLR 0 364 1 1284 173 18 14 chr4 46387350 46387422 -155940925 - L1MA8 LINE L1 -214 6077 6007 387 0 0 0 chr4 46387776 46387819 -155940528 + (TA)n Simple_repeat Simple_repeat 1 43 0 * 414 0 0 0 chr4 46387818 46387864 -155940483 + (GA)n Simple_repeat Simple_repeat 2 47 0 1530 194 79 9 chr4 46388739 46389068 -155939279 + MLT1A1 LTR MaLR 14 365 0 219 69 0 0 chr4 46389439 46389468 -155938879 + (TA)n Simple_repeat Simple_repeat 1 29 0 183 200 0 0 chr4 46390522 46390552 -155937795 - MER5A DNA MER1_type -159 30 1 6626 166 62 20 chr4 46391623 46392955 -155935392 - L1MC3 LINE L1 -2 7783 6397 4313 132 12 21 chr4 46392978 46393735 -155934612 - L1MA3 LINE L1 0 6305 5556 5713 165 12 6 chr4 46393739 46394800 -155933547 - L1MA3 LINE L1 -1026 5120 4053 1727 284 37 90 chr4 46394783 46395710 -155932637 - L1MCb LINE L1 -5224 894 4 * 596 275 0 34 chr4 46396276 46396454 -155931893 + MIR SINE MIR 91 262 0 21 0 0 0 chr4 46396600 46396621 -155931726 + AT_rich Low_complexity Low_complexity 1 21 0 303 316 123 0 chr4 46396765 46396879 -155931468 - MIR3 SINE MIR -48 160 33 204 257 257 46 chr4 46397792 46397944 -155930403 - MER5A DNA MER1_type -2 187 4 412 251 191 16 chr4 46398277 46398460 -155929887 + MIR SINE MIR 45 259 -3 229 284 98 29 chr4 46398512 46398602 -155929745 - MIR SINE MIR -80 128 32 284 261 65 85 chr4 46398602 46398755 -155929592 - MER5A DNA MER1_type 0 189 29 342 333 8 48 chr4 46398897 46398957 -155929390 - L2 LINE L2 0 3313 3259 819 238 33 28 chr4 46398957 46399171 -155929176 + MER20 DNA MER1_type 1 215 -4 342 333 8 48 chr4 46399171 46399236 -155929111 - L2 LINE L2 -54 3259 3193 262 331 167 14 chr4 46399322 46399669 -155928678 - L2 LINE L2 -795 2519 2120 1687 225 17 0 chr4 46400134 46400489 -155927858 + MLT1A1 LTR MaLR 5 365 0 226 176 0 59 chr4 46400624 46400675 -155927672 + CT-rich Low_complexity Low_complexity 3 50 0 1797 204 22 0 chr4 46401689 46402046 -155926301 - MLT1A1 LTR MaLR 0 365 1 207 311 127 32 chr4 46402280 46402563 -155925784 - L2 LINE L2 -1011 2303 1994 399 279 103 0 chr4 46402566 46402702 -155925645 + MIR SINE MIR 84 233 -29 1133 153 16 0 chr4 46403816 46404005 -155924342 + MLT1D LTR MaLR 24 215 -290 754 238 17 6 chr4 46454070 46454242 -155874105 + MLT1D LTR MaLR 332 505 0 1993 102 30 36 chr4 46454276 46454579 -155873768 + AluSc SINE Alu 1 301 -8 474 282 15 30 chr4 46454705 46454836 -155873511 + MIR SINE MIR 45 173 -89 209 355 27 0 chr4 46455898 46456008 -155872339 - MIR SINE MIR -72 190 78 302 175 0 0 chr4 46456009 46456066 -155872281 - MLT2B1 LTR ERVL 0 520 464 454 245 0 0 chr4 46456149 46456247 -155872100 - MLT2B1 LTR ERVL -44 476 379 27792 52 3 6 chr4 46456347 46460782 -155867565 + L1PA3 LINE L1 1733 6154 -1 332 276 94 8 chr4 46460782 46460909 -155867438 - LTR33A LTR ERVL -24 499 362 385 239 72 94 chr4 46461015 46461195 -155867152 - LTR33A LTR ERVL -341 182 7 989 215 39 0 chr4 46461583 46461788 -155866559 - MER58A DNA MER1_type -5 219 7 589 270 162 5 chr4 46461887 46462072 -155866275 + MIR SINE MIR 28 241 -21 267 79 0 0 chr4 46462412 46462450 -155865897 + (TA)n Simple_repeat Simple_repeat 1 38 0 294 276 115 45 chr4 46462732 46462888 -155865459 - MIR3 SINE MIR -40 168 2 204 67 0 0 chr4 46463245 46463275 -155865072 + (TA)n Simple_repeat Simple_repeat 1 30 0 27 29 0 0 chr4 46463375 46463409 -155864938 + AT_rich Low_complexity Low_complexity 1 34 0 344 261 0 22 chr4 46463409 46463501 -155864846 + L1MC4 LINE L1 6614 6703 -1339 261 0 0 0 chr4 46463501 46463530 -155864817 + (TA)n Simple_repeat Simple_repeat 1 29 0 1262 107 6 0 chr4 46463537 46463705 -155864642 + AluSq SINE Alu 1 169 -144 203 165 33 11 chr4 46463739 46463830 -155864517 + (TA)n Simple_repeat Simple_repeat 1 93 0 206 118 0 0 chr4 46463838 46463872 -155864475 + (CA)n Simple_repeat Simple_repeat 2 35 0 922 40 0 151 chr4 46464229 46464381 -155863966 + AluY SINE Alu 163 291 -20 234 220 0 0 chr4 46465762 46465821 -155862526 + (TG)n Simple_repeat Simple_repeat 2 60 0 22 0 0 0 chr4 46466090 46466112 -155862235 + AT_rich Low_complexity Low_complexity 1 22 0 582 254 16 38 chr4 46466886 46467071 -155861276 - MER112 DNA MER1_type 0 260 80 2052 158 2 56 chr4 46467087 46467143 -155861204 + MLT1B LTR MaLR 1 58 -332 2069 133 42 33 chr4 46467143 46467504 -155860843 + THE1B LTR MaLR 1 364 0 2052 158 2 56 chr4 46467504 46467859 -155860488 + MLT1B LTR MaLR 58 390 0 1961 101 0 0 chr4 46468917 46469193 -155859154 + L1PA13 LINE L1 5877 6152 -11 27 29 0 0 chr4 46469488 46469522 -155858825 + AT_rich Low_complexity Low_complexity 1 34 0 286 83 104 0 chr4 46469897 46469945 -155858402 - MLT2B2 LTR ERVL -462 53 1 2224 111 29 14 chr4 46470096 46470447 -155857900 - L1P4 LINE L1 -456 5712 5357 724 285 35 18 chr4 46470734 46470962 -155857385 - LTR16A1 LTR ERVL -213 244 13 1439 253 129 21 chr4 46471695 46472169 -155856178 + MLT1G1 LTR MaLR 19 543 -52 404 309 67 26 chr4 46472347 46472541 -155855806 - MIR SINE MIR 0 262 61 377 312 186 21 chr4 46472580 46472859 -155855488 - L2 LINE L2 -15 3298 2974 314 273 45 53 chr4 46472965 46473097 -155855250 + MIR SINE MIR 20 150 -112 24 0 0 0 chr4 46473184 46473208 -155855139 + AT_rich Low_complexity Low_complexity 1 24 0 364 247 22 11 chr4 46473659 46473748 -155854599 + MIR SINE MIR 27 116 -92 244 302 127 75 chr4 46474009 46474221 -155854126 + MIR SINE MIR 7 229 -33 291 327 47 0 chr4 46475243 46475350 -155852997 - MER91C DNA MER1_type -12 128 17 329 339 82 92 chr4 46475374 46475933 -155852414 + L2 LINE L2 2694 3232 -40 4417 138 27 7 chr4 46475973 46476717 -155851630 - L1M1 LINE L1 -4933 2632 1874 231 180 66 66 chr4 46476728 46476789 -155851558 + LTR43 LTR ERV1 526 586 -16 3292 187 41 28 chr4 46476805 46477918 -155850429 + L1MA9 LINE L1 4823 5959 -353 547 264 23 17 chr4 46478083 46478257 -155850090 - MER5B DNA MER1_type -3 175 1 410 213 35 92 chr4 46478970 46479111 -155849236 - MIR SINE MIR -70 192 60 3232 106 2 0 chr4 46479150 46479614 -155848733 - L1PA10 LINE L1 -4 6164 5700 425 351 63 25 chr4 46479631 46479950 -155848397 + MER102b DNA MER1_type 6 336 -5 24 32 0 0 chr4 46480991 46481022 -155847325 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 46481775 46481803 -155846544 + AT_rich Low_complexity Low_complexity 1 28 0 237 259 0 0 chr4 46482515 46482573 -155845774 + (TAA)n Simple_repeat Simple_repeat 2 59 0 752 259 132 4 chr4 46482645 46482873 -155845474 + MIR SINE MIR 5 261 -1 287 280 136 25 chr4 46482868 46482986 -155845361 - MIR SINE MIR -112 150 20 * 232 337 50 20 chr4 46483001 46483102 -155845245 + L2 LINE L2 3210 3313 0 204 310 0 0 chr4 46484032 46484103 -155844244 + GA-rich Low_complexity Low_complexity 1 71 0 2054 182 14 19 chr4 46484982 46485721 -155842626 - L1MC/D LINE L1 -743 5403 4787 2416 278 53 19 chr4 46485769 46486621 -155841726 - L1MEc LINE L1 -5385 1011 131 307 314 16 83 chr4 46486883 46487053 -155841294 - MLT1J LTR MaLR -141 474 215 25 0 0 0 chr4 46487434 46487459 -155840888 + AT_rich Low_complexity Low_complexity 1 25 0 1536 163 68 102 chr4 46487623 46488066 -155840281 - MSTA LTR MaLR 0 428 1 9050 144 20 38 chr4 46488066 46489672 -155838675 - MSTA-int LTR MaLR 0 1580 3 1667 168 125 33 chr4 46489674 46490066 -155838281 - MSTA LTR MaLR 0 428 1 993 200 15 5 chr4 46490228 46490423 -155837924 - AluJb SINE Alu -34 278 82 359 310 52 61 chr4 46490902 46491115 -155837232 - MIR SINE MIR -34 228 18 264 315 72 0 chr4 46492103 46492214 -155836133 + MIR SINE MIR 139 257 -5 3730 129 20 10 chr4 46492323 46492920 -155835427 - LTR26 LTR ERV1 0 603 1 510 137 63 0 chr4 46493231 46493326 -155835021 - MER49 LTR ERV1 -685 238 138 1192 166 0 5 chr4 46493326 46493519 -155834828 - LOR1-int LTR ERV1 -1100 7020 6829 1100 119 38 136 chr4 46493540 46493776 -155834571 - LOR1-int LTR ERV1 -4122 3998 3786 484 267 20 22 chr4 46494757 46494947 -155833400 - L1ME3A LINE L1 -5 6165 5985 5065 162 22 17 chr4 46494988 46495968 -155832379 - L1MA8 LINE L1 0 7710 6726 3904 198 18 14 chr4 46496076 46496946 -155831401 - L1MA8 LINE L1 -1075 6490 5617 2009 141 16 56 chr4 46496946 46497323 -155831024 + THE1C LTR MaLR 1 362 -13 5236 173 63 30 chr4 46497324 46498597 -155829750 - L1MA8 LINE L1 -1947 5618 4304 3411 242 25 53 chr4 46498748 46499495 -155828852 - L1MA8 LINE L1 -4291 3274 2508 7814 16 1 0 chr4 46499495 46501117 -155827230 - L1PA2 LINE L1 -1 6154 4532 3411 242 25 53 chr4 46501117 46501269 -155827078 - L1MA8 LINE L1 -5057 2508 2353 2106 144 0 0 chr4 46501269 46501575 -155826772 - AluSx SINE Alu -6 306 1 3411 242 25 53 chr4 46501575 46501990 -155826357 - L1MA8 LINE L1 -5212 2353 1996 1742 251 96 55 chr4 46502033 46502670 -155825677 - L1MA8 LINE L1 -6361 1128 466 32 0 0 0 chr4 46503066 46503098 -155825249 + AT_rich Low_complexity Low_complexity 1 32 0 192 245 0 19 chr4 46503869 46503922 -155824425 + MIR3 SINE MIR 107 158 -50 312 27 0 0 chr4 46504436 46504473 -155823874 + (TG)n Simple_repeat Simple_repeat 2 38 0 453 0 78 0 chr4 46504641 46504718 -155823629 + (TA)n Simple_repeat Simple_repeat 2 84 0 267 31 0 0 chr4 46504717 46504749 -155823598 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 1432 187 12 12 chr4 46504749 46504995 -155823352 - AluJo SINE Alu -39 273 28 21 0 0 0 chr4 46505793 46505814 -155822533 + AT_rich Low_complexity Low_complexity 1 21 0 1032 205 114 24 chr4 46506572 46506826 -155821521 - MLT1B LTR MaLR 0 390 114 30 45 0 0 chr4 46507614 46507658 -155820689 + AT_rich Low_complexity Low_complexity 1 44 0 183 156 0 0 chr4 46507674 46507706 -155820641 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 228 135 39 39 chr4 46507952 46508004 -155820343 - MER106B DNA MER1_type -113 946 895 * 357 154 0 103 chr4 46507999 46508077 -155820270 - MER106A DNA MER1_type -163 73 4 223 229 14 43 chr4 46509280 46509350 -155818997 + CT-rich Low_complexity Low_complexity 1 68 0 2236 158 0 6 chr4 46509643 46509998 -155818349 - MER47A DNA MER2_type 0 366 14 221 294 25 157 chr4 46510792 46510989 -155817358 - L2 LINE L2 -112 3160 2990 2444 70 20 0 chr4 46512956 46513257 -155815090 + AluY SINE Alu 1 307 -4 2582 192 18 3 chr4 46513258 46513826 -155814521 + L1 LINE L1 3088 3663 -2483 907 224 113 39 chr4 46513823 46514037 -155814310 - L1MC4 LINE L1 -1212 6830 6581 * 1385 191 0 84 chr4 46514037 46514357 -155813990 - AluJo SINE Alu -19 293 1 907 224 113 39 chr4 46514357 46514477 -155813870 - L1MC4 LINE L1 -1461 6581 6471 228 269 143 34 chr4 46514966 46515085 -155813262 - MIR3 SINE MIR -8 200 69 2107 125 3 0 chr4 46515273 46515561 -155812786 - AluSp SINE Alu -24 289 1 430 236 89 16 chr4 46515629 46515752 -155812595 - MIR SINE MIR -124 138 7 691 200 89 0 chr4 46516771 46516906 -155811441 + Tigger3(Golem) DNA MER2_type 1 147 -2882 340 250 0 0 chr4 46516887 46516971 -155811376 + Tigger3(Golem) DNA MER2_type 2269 2352 -677 * 1126 188 23 9 chr4 46516987 46517205 -155811142 + AluJo SINE Alu 87 307 -5 3372 134 73 8 chr4 46517210 46517809 -155810538 + Tigger3(Golem) DNA MER2_type 2390 3027 -2 25 0 0 0 chr4 46518620 46518645 -155809702 + AT_rich Low_complexity Low_complexity 1 25 0 252 280 13 40 chr4 46518881 46518956 -155809391 + L2 LINE L2 3233 3305 -8 2357 94 0 0 chr4 46519731 46520028 -155808319 - AluSx SINE Alu -10 302 6 358 327 147 6 chr4 46520210 46520366 -155807981 + L2 LINE L2 3095 3272 0 1803 108 97 0 chr4 46520448 46520740 -155807607 + AluSq SINE Alu 1 317 0 257 315 82 131 chr4 46520806 46521064 -155807283 - L2 LINE L2 -14 3258 3024 1999 121 24 3 chr4 46521064 46521354 -155806993 + AluSc SINE Alu 5 300 -9 257 315 82 131 chr4 46521354 46521485 -155806862 - L2 LINE L2 -248 3024 2888 23 0 0 0 chr4 46521632 46521655 -155806692 + AT_rich Low_complexity Low_complexity 1 23 0 251 224 17 0 chr4 46522175 46522233 -155806114 + MIR SINE MIR 183 241 -21 504 262 37 45 chr4 46522592 46522836 -155805511 - LTR38 LTR ERV1 -26 530 289 2760 160 48 14 chr4 46522840 46523538 -155804809 + LTR1B LTR ERV1 1 826 0 1339 116 39 138 chr4 46523541 46523902 -155804445 - LTR38B LTR ERV1 -285 325 1 14363 155 3 10 chr4 46524585 46526895 -155801452 + HERVI LTR ERV1 5466 7758 -27 3691 65 18 12 chr4 46526924 46527434 -155800913 + LTR10D LTR ERV1 1 513 0 1835 193 9 6 chr4 46527606 46527943 -155800404 - MLT1A1 LTR MaLR 0 365 28 1760 136 8 84 chr4 46527991 46528365 -155799982 - MER4A LTR ERV1 0 664 261 486 144 89 0 chr4 46528365 46528455 -155799892 - MER4A LTR ERV1 -566 98 1 15567 122 57 36 chr4 46528462 46530624 -155797723 - MER4A-int LTR ERV1 -1 6597 4481 2053 131 0 0 chr4 46530624 46530932 -155797415 + AluSg SINE Alu 5 312 0 15567 122 57 36 chr4 46530932 46531744 -155796603 - MER4A-int LTR ERV1 -2117 4481 3687 2438 82 3 0 chr4 46531744 46532050 -155796297 + AluY SINE Alu 2 308 -3 15567 122 57 36 chr4 46532050 46532277 -155796070 - MER4A-int LTR ERV1 -2911 3687 1862 1229 175 98 0 chr4 46532277 46532511 -155795836 + LTR8 LTR ERV1 1 257 -434 3964 87 62 45 chr4 46532511 46533224 -155795123 - MER4A-int LTR ERV1 -4103 2495 1771 1495 91 12 169 chr4 46533222 46533588 -155794759 - MER4A-int LTR ERV1 -4266 1284 503 * 2799 100 136 64 chr4 46533556 46534042 -155794305 - MER4A-int LTR ERV1 -5997 601 68 6205 58 12 10 chr4 46534042 46534821 -155793526 + LTR17 LTR ERV1 1 780 0 2799 100 136 64 chr4 46534821 46534895 -155793452 - MER4A-int LTR ERV1 -6530 68 1 1351 161 27 0 chr4 46534898 46535121 -155793226 - MER4A LTR ERV1 0 664 436 3841 177 43 7 chr4 46535122 46536324 -155792023 - L1P4 LINE L1 -515 5651 4406 343 328 78 14 chr4 46536624 46536796 -155791551 + MIR SINE MIR 13 191 -61 275 221 33 25 chr4 46537478 46537567 -155790780 - MIR SINE MIR -71 191 103 797 264 73 12 chr4 46537592 46538081 -155790266 - L1M4 LINE L1 -1462 4684 4160 2619 208 12 2 chr4 46538090 46538589 -155789758 + MER82 DNA MER2_type 1 504 -149 244 193 11 45 chr4 46538793 46538881 -155789466 + L1MC4 LINE L1 6608 6692 -1350 213 196 0 0 chr4 46538888 46538939 -155789408 + (TATG)n Simple_repeat Simple_repeat 1 51 0 588 206 174 28 chr4 46540017 46540264 -155788083 - L1M4 LINE L1 -801 5345 5063 * 1396 241 58 44 chr4 46540247 46540748 -155787599 + L1ME1 LINE L1 5643 6150 -16 225 281 16 0 chr4 46540953 46541020 -155787327 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 2493 82 0 0 chr4 46543011 46543317 -155785030 + AluY SINE Alu 1 306 -5 190 313 107 36 chr4 46543665 46543777 -155784570 - MIR SINE MIR -66 142 23 27 0 0 0 chr4 46544071 46544098 -155784249 + AT_rich Low_complexity Low_complexity 1 27 0 183 42 0 0 chr4 46544545 46544569 -155783778 + (TG)n Simple_repeat Simple_repeat 1 24 0 15143 66 1 3 chr4 46544782 46546822 -155781525 + L1P LINE L1 1 2035 -4111 39 50 0 0 chr4 46546976 46547036 -155781311 + AT_rich Low_complexity Low_complexity 1 60 0 23 33 0 0 chr4 46547282 46547312 -155781035 + AT_rich Low_complexity Low_complexity 1 30 0 2657 178 27 25 chr4 46547630 46548187 -155780160 + MER74A LTR ERVL 1 558 0 336 331 36 14 chr4 46548258 46548397 -155779950 - MIR SINE MIR -95 167 26 2489 180 42 31 chr4 46550135 46550394 -155777953 + MER44D DNA MER2_type 1 256 -2231 2226 110 7 0 chr4 46550394 46550693 -155777654 + AluSc SINE Alu 5 305 -4 2489 180 42 31 chr4 46550693 46550977 -155777370 + MER44D DNA MER2_type 256 605 0 1229 146 5 41 chr4 46551112 46551331 -155777016 - AluSg/x SINE Alu -5 307 97 3561 185 28 86 chr4 46551826 46552854 -155775493 - LTR5 LTR ERVK 0 969 1 1479 195 136 16 chr4 46553041 46553410 -155774937 + MSTA LTR MaLR 1 413 -15 737 62 0 0 chr4 46553410 46553506 -155774841 + L1PA4 LINE L1 6057 6152 -3 9361 139 14 35 chr4 46553544 46555155 -155773192 + MSTA-int LTR MaLR 3 1580 0 1861 143 135 23 chr4 46555155 46555540 -155772807 + MSTA LTR MaLR 1 428 0 220 358 12 0 chr4 46556016 46556097 -155772250 - L2 LINE L2 -5 3267 3186 8669 61 2 2 chr4 46556112 46557183 -155771164 + MER11C LTR ERVK 1 1071 0 784 321 97 52 chr4 46557436 46557950 -155770397 - L2 LINE L2 -366 2948 2412 203 268 52 31 chr4 46558777 46558874 -155769473 - MIR SINE MIR -13 249 151 306 279 34 101 chr4 46558926 46559105 -155769242 + MIR SINE MIR 47 213 -49 22 0 0 0 chr4 46559538 46559560 -155768787 + AT_rich Low_complexity Low_complexity 1 22 0 1725 189 9 9 chr4 46559672 46560032 -155768315 - MLT1A1 LTR MaLR 0 365 1 228 194 16 16 chr4 46560036 46560098 -155768249 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 472 287 40 49 chr4 46560286 46560328 -155768019 - MLT1J LTR MaLR -268 243 202 2250 92 0 3 chr4 46560328 46560611 -155767736 + AluSq SINE Alu 17 298 -15 472 287 40 49 chr4 46560611 46560791 -155767556 - MLT1J LTR MaLR -309 202 23 541 252 107 0 chr4 46561042 46561201 -155767146 - MIR SINE MIR -30 232 57 676 274 140 25 chr4 46561539 46561860 -155766487 + LTR33 LTR ERVL 162 519 -2 632 274 81 0 chr4 46562764 46562961 -155765386 - MIR SINE MIR -2 260 48 23 33 0 0 chr4 46562961 46562991 -155765356 + AT_rich Low_complexity Low_complexity 1 30 0 2971 209 94 5 chr4 46563039 46563834 -155764513 + L1PA14 LINE L1 5291 6156 -5 239 192 39 0 chr4 46564585 46564637 -155763710 - L2 LINE L2 -11 3261 3208 322 395 8 41 chr4 46565115 46565358 -155762989 - L2 LINE L2 -159 3113 2879 199 263 0 35 chr4 46565405 46565462 -155762885 - L2 LINE L2 -496 2818 2764 25 0 0 0 chr4 46565941 46565966 -155762381 + AT_rich Low_complexity Low_complexity 1 25 0 227 190 17 0 chr4 46565967 46566025 -155762322 + (TA)n Simple_repeat Simple_repeat 1 59 0 296 301 45 45 chr4 46566746 46566818 -155761529 + L2 LINE L2 3158 3229 -84 285 75 0 0 chr4 46566818 46566858 -155761489 + (TG)n Simple_repeat Simple_repeat 1 40 0 296 301 45 45 chr4 46566858 46566941 -155761406 + L2 LINE L2 3228 3313 0 348 336 37 65 chr4 46567526 46567754 -155760593 + MIR SINE MIR 1 222 -40 230 283 97 80 chr4 46569301 46569601 -155758746 + L2 LINE L2 2998 3302 -11 318 341 11 0 chr4 46569635 46569726 -155758621 - L2 LINE L2 -14 3258 3167 308 287 74 25 chr4 46569882 46570004 -155758343 + MIR SINE MIR 12 139 -123 331 274 43 8 chr4 46571180 46571297 -155757050 + MER94 DNA DNA 12 132 -2 329 211 99 0 chr4 46571712 46571783 -155756564 - L2 LINE L2 0 3313 3236 345 302 54 27 chr4 46572069 46572218 -155756129 + MIR3 SINE MIR 31 183 -25 307 323 43 49 chr4 46572379 46572543 -155755804 - L1M4 LINE L1 -1331 4815 4653 202 269 0 0 chr4 46572659 46572711 -155755636 - MIR SINE MIR -114 148 97 679 300 53 21 chr4 46573018 46573261 -155755086 - MIR SINE MIR -10 252 2 379 331 43 0 chr4 46573816 46573955 -155754392 + L2 LINE L2 3128 3272 0 22 0 0 0 chr4 46574023 46574045 -155754302 + AT_rich Low_complexity Low_complexity 1 22 0 443 217 87 17 chr4 46575489 46575604 -155752743 + L2 LINE L2 3191 3313 0 2526 47 0 0 chr4 46575887 46576185 -155752162 + AluY SINE Alu 1 298 -13 233 234 131 65 chr4 46576902 46577009 -155751338 + MIR SINE MIR 70 183 -79 460 214 10 0 chr4 46577351 46577449 -155750898 - MIR SINE MIR 0 262 164 2178 115 3 14 chr4 46578022 46578318 -155750029 + AluSx SINE Alu 3 295 -17 694 142 15 0 chr4 46578412 46578546 -155749801 - MER53 DNA DNA -3 186 51 204 125 0 0 chr4 46578647 46578679 -155749668 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 200 433 48 0 chr4 46578992 46579179 -155749168 - L2 LINE L2 -225 3047 2852 228 182 0 0 chr4 46579460 46579504 -155748843 + A-rich Low_complexity Low_complexity 1 44 0 2202 102 10 0 chr4 46579624 46579928 -155748419 - AluSq SINE Alu -6 307 1 23 0 0 0 chr4 46580028 46580051 -155748296 + AT_rich Low_complexity Low_complexity 1 23 0 361 210 94 17 chr4 46580085 46580266 -155748081 + MER113 DNA MER1_type? 17 211 -310 604 236 69 64 chr4 46581244 46581447 -155746900 + MIR SINE MIR 31 234 -28 1687 182 30 57 chr4 46581536 46581937 -155746410 + MLT1B LTR MaLR 1 390 0 497 206 52 7 chr4 46583013 46583149 -155745198 - MER63 DNA MER1_type 0 1061 920 900 223 47 39 chr4 46583157 46583516 -155744831 - Charlie2a DNA MER1_type -1108 1754 1393 15496 160 43 40 chr4 46583517 46585232 -155743115 + L1M1 LINE L1 17 1725 -5840 704 79 0 0 chr4 46585232 46585333 -155743014 + AluY SINE Alu 211 311 0 15496 160 43 40 chr4 46585333 46586385 -155741962 + L1M1 LINE L1 1725 2898 -4667 369 0 0 0 chr4 46586385 46586426 -155741921 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 15496 160 43 40 chr4 46586426 46586779 -155741568 + L1M1 LINE L1 2898 3248 -4317 206 274 16 0 chr4 46587392 46587454 -155740893 + (TG)n Simple_repeat Simple_repeat 2 64 0 21 0 0 0 chr4 46588702 46588723 -155739624 + AT_rich Low_complexity Low_complexity 1 21 0 327 231 0 0 chr4 46588801 46588866 -155739481 - L2 LINE L2 0 3313 3249 252 0 0 0 chr4 46589257 46589285 -155739062 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 251 0 0 0 chr4 46589289 46589321 -155739026 - L1PA14 LINE L1 -24 6137 6106 2089 111 4 0 chr4 46589731 46590034 -155738313 + AluY SINE Alu 1 304 0 330 361 42 37 chr4 46590073 46590289 -155738058 - L2 LINE L2 -179 3093 2877 385 331 6 17 chr4 46590528 46590703 -155737644 + L1ME LINE L1 256 428 -5642 807 256 84 34 chr4 46590880 46591699 -155736648 + L1ME LINE L1 3953 4885 -1195 585 223 0 23 chr4 46591735 46591865 -155736482 + MER20 DNA MER1_type 93 219 0 1099 199 87 46 chr4 46591956 46592453 -155735894 + L1ME LINE L1 5069 5599 -499 2093 137 22 28 chr4 46592454 46592818 -155735529 + THE1B LTR MaLR 3 364 0 11086 98 34 3 chr4 46592818 46594351 -155733996 + THE1B-int LTR MaLR 1 1580 0 2003 150 19 25 chr4 46594351 46594717 -155733630 + THE1B LTR MaLR 1 364 0 29 28 0 0 chr4 46594971 46595007 -155733340 + AT_rich Low_complexity Low_complexity 1 36 0 189 267 35 78 chr4 46595235 46595351 -155732996 + MIR SINE MIR 102 212 -50 203 242 99 77 chr4 46595494 46595585 -155732762 - MIR3 SINE MIR -28 180 88 675 292 65 0 chr4 46598507 46598723 -155729624 + MIR SINE MIR 3 232 -30 796 336 69 24 chr4 46598912 46599539 -155728808 + ERVL LTR ERVL 4716 5370 -394 6849 231 39 36 chr4 46600131 46601800 -155726547 + L1 LINE L1 2251 3957 -2189 1122 156 0 0 chr4 46601800 46601967 -155726380 + AluSg/x SINE Alu 131 297 -15 6849 231 39 36 chr4 46601967 46602682 -155725665 + L1 LINE L1 3957 4668 -1478 429 88 0 0 chr4 46602676 46602744 -155725603 + L1MA1 LINE L1 5296 5363 -939 * 2388 101 6 37 chr4 46602802 46603157 -155725190 - THE1A LTR MaLR -11 344 1 11191 103 7 14 chr4 46603157 46604748 -155723599 - THE1A-int LTR MaLR 0 1580 1 2711 66 20 0 chr4 46604748 46605096 -155723251 - THE1A LTR MaLR 0 355 1 6629 98 2 4 chr4 46605096 46606041 -155722306 + L1MA1 LINE L1 5360 6302 0 31 92 0 0 chr4 46606134 46606221 -155722126 + AT_rich Low_complexity Low_complexity 1 87 0 1423 217 78 52 chr4 46606255 46606679 -155721668 - MLT1C LTR MaLR -32 435 1 1390 297 104 15 chr4 46606732 46607695 -155720652 - Charlie2a DNA MER1_type -1698 1164 65 193 245 0 0 chr4 46608295 46608344 -155720003 + L2 LINE L2 3262 3310 -3 550 287 62 39 chr4 46608721 46609028 -155719319 + L2 LINE L2 2326 2639 -675 427 280 36 80 chr4 46609042 46609267 -155719080 + L2 LINE L2 3075 3289 -24 2045 140 36 0 chr4 46609276 46609634 -155718713 + L1MA4 LINE L1 5927 6297 -3 378 365 121 30 chr4 46609690 46610325 -155718022 - L2 LINE L2 -550 2764 2072 276 217 72 24 chr4 46610652 46610735 -155717612 + MLT1H LTR MaLR 1 87 -462 3820 158 34 16 chr4 46611186 46611931 -155716416 - L1MA10 LINE L1 -7 6327 5570 801 178 44 11 chr4 46611931 46612111 -155716236 + L1M3 LINE L1 5044 5229 -917 2847 121 30 5 chr4 46612122 46612560 -155715787 - L1PA14 LINE L1 -2 6159 5711 492 82 0 0 chr4 46612656 46612729 -155715618 - L1PA7 LINE L1 -3 6151 6079 1404 167 15 62 chr4 46612729 46613135 -155715212 + L1M3 LINE L1 5216 5583 -585 299 293 90 8 chr4 46613297 46613430 -155714917 - MARNA DNA Mariner -45 541 398 297 356 58 6 chr4 46613309 46613483 -155714864 + MARNA DNA Mariner 58 240 -346 * 1872 183 91 57 chr4 46613529 46614022 -155714325 + MER67D LTR ERV1 1 510 -4 1662 165 8 0 chr4 46614183 46614449 -155713898 + AluSx SINE Alu 1 268 -44 2380 89 0 0 chr4 46615876 46616180 -155712167 + AluSg SINE Alu 1 304 -6 395 206 14 0 chr4 46616356 46616429 -155711918 - MER5A DNA MER1_type -83 106 33 200 324 49 49 chr4 46616445 46616547 -155711800 + MIR3 SINE MIR 12 113 -95 596 287 58 27 chr4 46617413 46617636 -155710711 + MIR SINE MIR 31 260 -2 2204 172 31 17 chr4 46618435 46618854 -155709493 + MSTB LTR MaLR 1 425 -1 223 316 13 13 chr4 46619055 46619131 -155709216 + L2 LINE L2 3234 3309 -4 23 68 0 0 chr4 46619412 46619456 -155708891 + AT_rich Low_complexity Low_complexity 1 44 0 1928 166 14 6 chr4 46619561 46619916 -155708431 - MER46B DNA MER2_type 0 236 4 1249 25 13 6 chr4 46620823 46620980 -155707367 - L1PA4 LINE L1 -2 6153 5996 2275 103 0 6 chr4 46624150 46624462 -155703885 + AluY SINE Alu 1 310 -1 304 325 97 13 chr4 46624929 46625083 -155703264 - MLT2E LTR ERVL -420 208 42 234 0 0 0 chr4 46626565 46626591 -155701756 + (CA)n Simple_repeat Simple_repeat 1 26 0 1473 211 116 6 chr4 46627329 46627684 -155700663 + MSTD LTR MaLR 1 394 -2 2008 134 5 102 chr4 46627729 46628038 -155700309 + MER47A DNA MER2_type 1 264 -2059 1650 171 35 3 chr4 46628038 46628324 -155700023 - AluJb SINE Alu -17 295 1 2008 134 5 102 chr4 46628324 46628418 -155699929 + MER47A DNA MER2_type 264 365 -1 5734 269 62 24 chr4 46628418 46630042 -155698305 + MSTD-int LTR MaLR 38 1722 -13 1817 209 29 13 chr4 46630043 46630420 -155697927 + MSTD LTR MaLR 11 393 -3 25 31 0 0 chr4 46630597 46630629 -155697718 + AT_rich Low_complexity Low_complexity 1 32 0 1257 271 22 35 chr4 46630874 46631328 -155697019 - L1ME2 LINE L1 -2 6162 5715 3208 243 113 9 chr4 46631413 46632397 -155695950 - L1MC4 LINE L1 -143 7899 6814 * 19627 178 30 15 chr4 46632395 46636537 -155691810 + L1M1 LINE L1 17 4219 -3346 259 281 90 90 chr4 46686552 46686719 -155641628 - MLT1K LTR MaLR -415 173 7 531 306 68 19 chr4 46686840 46687046 -155641301 - MIR SINE MIR -32 230 15 363 44 0 0 chr4 46687729 46687774 -155640573 + (CA)n Simple_repeat Simple_repeat 2 46 0 944 190 4 18 chr4 46687777 46688003 -155640344 + L1P LINE L1 5141 5363 -783 192 40 0 0 chr4 46688012 46688037 -155640310 + (CA)n Simple_repeat Simple_repeat 1 25 0 351 162 54 0 chr4 46688441 46688515 -155639832 + MIR SINE MIR 129 206 -56 450 143 0 14 chr4 46688519 46688612 -155639735 - AluSg/x SINE Alu 0 304 213 962 48 16 0 chr4 46688712 46688837 -155639510 - L1PA8 LINE L1 -292 5880 5754 * 12563 184 37 65 chr4 46688812 46689231 -155639116 - L1 LINE L1 -753 6812 6383 2143 114 20 0 chr4 46689231 46689529 -155638818 + AluSx SINE Alu 1 304 -8 12563 184 37 65 chr4 46689529 46692633 -155635714 - L1 LINE L1 -1182 6383 3386 462 114 0 0 chr4 46692996 46693066 -155635281 + (TA)n Simple_repeat Simple_repeat 2 71 0 311 111 74 0 chr4 46694093 46694147 -155634200 + MER53 DNA DNA 131 188 -1 672 188 0 38 chr4 46694150 46694283 -155634064 + MLT1E1 LTR MaLR 134 261 -393 1281 217 14 11 chr4 46694353 46694629 -155633718 + MLT1E1 LTR MaLR 378 654 0 2450 90 0 0 chr4 46695034 46695368 -155632979 - L1PA7 LINE L1 0 6154 5821 363 282 45 9 chr4 46695378 46695488 -155632859 - MIR SINE MIR -87 175 62 22 56 0 0 chr4 46696151 46696187 -155632160 + AT_rich Low_complexity Low_complexity 1 36 0 219 125 0 0 chr4 46696390 46696430 -155631917 + (TG)n Simple_repeat Simple_repeat 1 40 0 180 152 0 0 chr4 46696567 46696600 -155631747 + A-rich Low_complexity Low_complexity 3 35 0 192 340 78 48 chr4 46696633 46696736 -155631611 + L2 LINE L2 3164 3269 -3 30 0 0 0 chr4 46698806 46698836 -155629511 + AT_rich Low_complexity Low_complexity 1 30 0 747 327 16 4 chr4 46699828 46700076 -155628271 + MIR SINE MIR 12 262 0 2374 88 0 0 chr4 46700709 46701017 -155627330 - AluY SINE Alu -1 310 3 1329 203 62 31 chr4 46701828 46702148 -155626199 + MLT1B LTR MaLR 61 390 0 364 335 71 13 chr4 46702244 46702399 -155625948 - L2 LINE L2 -8 3264 3101 327 324 57 68 chr4 46702787 46702912 -155625435 - MLT1K LTR MaLR -67 521 396 632 64 11 0 chr4 46702912 46703006 -155625341 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 327 324 57 68 chr4 46703006 46703247 -155625100 - MLT1K LTR MaLR -192 396 159 2504 58 0 3 chr4 46703425 46703735 -155624612 - AluY SINE Alu -2 309 1 2800 220 26 5 chr4 46703884 46704680 -155623667 + L1PA16 LINE L1 4657 5471 -695 2723 51 0 11 chr4 46704680 46705026 -155623321 + L1PA6 LINE L1 5801 6147 -7 3732 149 32 30 chr4 46705026 46705710 -155622637 + L1PA16 LINE L1 5469 6165 -1 182 152 30 0 chr4 46707531 46707564 -155620783 + L2 LINE L2 3258 3291 -22 195 301 82 27 chr4 46708041 46708114 -155620233 + L2 LINE L2 3219 3295 -18 559 311 149 32 chr4 46710074 46710659 -155617688 + HAL1 LINE L1 426 1078 -1429 291 239 125 0 chr4 46710660 46710748 -155617599 + L1 LINE L1 4904 5002 -1144 9134 184 58 13 chr4 46710769 46711221 -155617126 - L1MA4 LINE L1 -6 7713 7283 2410 64 0 0 chr4 46711221 46711518 -155616829 - AluY SINE Alu -14 297 1 9134 184 58 13 chr4 46711518 46713918 -155614429 - L1MA4 LINE L1 -436 7283 4729 3317 142 81 0 chr4 46713921 46714542 -155613805 - L1MA4 LINE L1 -4436 3129 2459 * 4400 168 18 20 chr4 46714530 46715017 -155613330 + L1PA16 LINE L1 4983 5470 -696 252 0 0 0 chr4 46715017 46715045 -155613302 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4400 168 18 20 chr4 46715045 46715647 -155612700 + L1PA16 LINE L1 5470 6072 -94 483 260 76 29 chr4 46715704 46716019 -155612328 + HAL1 LINE L1 1121 1450 -1057 274 248 248 0 chr4 46716043 46716156 -155612191 + HAL1 LINE L1 1681 1821 -686 325 297 75 75 chr4 46719164 46719470 -155608877 - HAL1 LINE L1 -356 2151 1846 652 335 28 22 chr4 46719528 46719889 -155608458 - HAL1 LINE L1 -788 1719 1357 468 272 38 24 chr4 46720018 46720188 -155608159 - MER52A LTR ERV1 -395 1232 449 * 799 206 92 163 chr4 46720169 46720506 -155607841 - LTR28 LTR ERV1 -785 970 1 9395 120 10 9 chr4 46720506 46721893 -155606454 - LTR28-int LTR ERV1 0 7091 5703 613 196 103 127 chr4 46721977 46722464 -155605883 - MER52A LTR ERV1 -23 970 1 460 270 157 100 chr4 46722543 46723453 -155604894 - HAL1 LINE L1 -1286 1221 260 5520 158 13 2 chr4 46724173 46725118 -155603229 - L1MA3 LINE L1 -8 6297 5343 222 37 0 0 chr4 46725118 46725145 -155603202 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1530 85 5 5 chr4 46725145 46725356 -155602991 - L1PA8 LINE L1 -17 6155 5945 22 0 0 0 chr4 46727022 46727044 -155601303 + AT_rich Low_complexity Low_complexity 1 22 0 235 358 60 8 chr4 46727099 46727233 -155601114 - MIR SINE MIR -3 259 119 694 247 55 22 chr4 46727888 46728070 -155600277 - MIR SINE MIR -11 251 64 320 346 10 0 chr4 46728068 46728172 -155600175 + MIR3 SINE MIR 81 185 -23 * 216 293 134 12 chr4 46728390 46728472 -155599875 + L2 LINE L2 3221 3312 -1 913 33 0 0 chr4 46729732 46729854 -155598493 - L1PA2 LINE L1 -2807 3339 3218 17434 22 0 0 chr4 46729854 46732667 -155595680 + L1PA2 LINE L1 3341 6153 -2 201 39 0 0 chr4 46732670 46732696 -155595651 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 222 37 0 0 chr4 46732779 46732806 -155595541 + (A)n Simple_repeat Simple_repeat 1 27 0 210 359 33 22 chr4 46733259 46733351 -155594996 - MIR3 SINE MIR -31 177 85 1017 182 6 0 chr4 46734632 46734808 -155593539 - AluJb SINE Alu -16 296 120 3036 290 88 34 chr4 46734962 46735327 -155593020 - HERV16 LTR ERVL -3645 1351 1007 1791 204 27 0 chr4 46735327 46735665 -155592682 - MER7A DNA MER2_type -1 345 1 3036 290 88 34 chr4 46735665 46736581 -155591766 - HERV16 LTR ERVL -3989 1007 1 966 281 51 37 chr4 46736619 46736914 -155591433 - LTR16A LTR ERVL -93 357 59 187 363 58 43 chr4 46737633 46738120 -155590227 - L2 LINE L2 -909 2405 1912 371 349 9 9 chr4 46738132 46738238 -155590109 - L2 LINE L2 -4 3268 3163 229 325 96 5 chr4 46738399 46738543 -155589804 - MIR SINE MIR -58 150 9 249 293 37 12 chr4 46738677 46738759 -155589588 - L2 LINE L2 -48 3224 3141 25 31 0 0 chr4 46739233 46739265 -155589082 + AT_rich Low_complexity Low_complexity 1 32 0 2596 36 7 0 chr4 46740390 46740699 -155587648 - AluY SINE Alu 0 311 1 360 0 0 0 chr4 46740834 46740874 -155587473 + (CA)n Simple_repeat Simple_repeat 2 41 0 481 291 17 0 chr4 46741181 46741298 -155587049 - L2 LINE L2 -8 3305 3187 297 297 178 0 chr4 46741955 46742056 -155586291 + L2 LINE L2 3195 3313 0 294 95 0 0 chr4 46742176 46742218 -155586129 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 180 271 21 0 chr4 46742441 46742489 -155585858 + L2 LINE L2 3263 3311 -2 240 335 21 37 chr4 46743508 46743638 -155584709 - L1M1 LINE L1 -760 5543 5415 2195 127 33 30 chr4 46743638 46744000 -155584347 - THE1B LTR MaLR 0 364 2 240 335 21 37 chr4 46744000 46744060 -155584287 - L1M1 LINE L1 -888 5415 5356 4330 151 30 37 chr4 46744188 46744310 -155584037 - L1MA9 LINE L1 -26 6286 6165 363 23 0 0 chr4 46744310 46744354 -155583993 + (TG)n Simple_repeat Simple_repeat 1 44 0 4330 151 30 37 chr4 46744354 46745737 -155582610 - L1MA9 LINE L1 -147 6165 4501 537 330 132 0 chr4 46746175 46746402 -155581945 + MIR SINE MIR 4 260 -2 185 189 57 38 chr4 46747045 46747098 -155581249 + L2 LINE L2 3219 3272 0 3702 139 25 3 chr4 46747871 46748502 -155579845 + L1MA2 LINE L1 5565 6209 -95 28 29 0 0 chr4 46748534 46748569 -155579778 + AT_rich Low_complexity Low_complexity 1 35 0 211 100 14 57 chr4 46748631 46748701 -155579646 + (TA)n Simple_repeat Simple_repeat 2 68 0 824 214 12 6 chr4 46748730 46748903 -155579444 - MER5A DNA MER1_type -15 174 1 303 394 113 5 chr4 46749664 46749877 -155578470 + MIR SINE MIR 20 255 -7 180 337 48 0 chr4 46749884 46749967 -155578380 - L3 LINE CR1 -92 1485 1399 38 61 0 0 chr4 46750127 46750193 -155578154 + AT_rich Low_complexity Low_complexity 1 66 0 1040 252 100 30 chr4 46750355 46750724 -155577623 - MLT1I LTR MaLR -8 401 7 2357 97 0 3 chr4 46751752 46752060 -155576287 - AluSx SINE Alu -5 307 1 270 73 0 0 chr4 46752408 46752449 -155575898 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1234 211 16 12 chr4 46752451 46752693 -155575654 - AluJo SINE Alu -30 282 40 358 312 84 25 chr4 46752896 46753098 -155575249 + L2 LINE L2 2274 2487 -827 764 205 60 32 chr4 46753508 46753693 -155574654 + MER20 DNA MER1_type 30 219 0 269 280 75 21 chr4 46753712 46753805 -155574542 + L2 LINE L2 2919 3016 -256 220 297 0 14 chr4 46754436 46754510 -155573837 - MIR SINE MIR 0 262 190 370 302 21 0 chr4 46754605 46754701 -155573646 + LTR33 LTR ERVL 21 118 -403 2299 137 19 6 chr4 46754725 46755084 -155573263 + THE1B LTR MaLR 1 364 0 10925 116 5 29 chr4 46755084 46756694 -155571653 + THE1B-int LTR MaLR 1 1571 -9 2485 117 17 6 chr4 46756702 46757062 -155571285 + THE1B LTR MaLR 1 364 0 571 262 10 64 chr4 46757210 46757412 -155570935 + LTR33 LTR ERVL 328 518 -3 321 341 53 29 chr4 46758261 46758431 -155569916 - L3 LINE CR1 -624 953 780 298 146 0 18 chr4 46758529 46758584 -155569763 - MADE1 DNA Mariner -26 54 1 26 0 0 0 chr4 46758689 46758715 -155569632 + AT_rich Low_complexity Low_complexity 1 26 0 1598 219 40 47 chr4 46758734 46759204 -155569143 + MLT1C LTR MaLR 1 467 0 2093 120 7 0 chr4 46760266 46760549 -155567798 + AluSx SINE Alu 1 285 -27 259 317 33 97 chr4 46761197 46761528 -155566819 - MLT1J LTR MaLR -46 465 156 28 29 0 0 chr4 46761685 46761720 -155566627 + AT_rich Low_complexity Low_complexity 1 35 0 663 285 58 96 chr4 46762352 46762851 -155565496 - LTR33A LTR ERVL -8 515 36 676 286 25 23 chr4 46763146 46763593 -155564754 + LTR33 LTR ERVL 15 512 -9 28 0 0 0 chr4 46764257 46764285 -155564062 + AT_rich Low_complexity Low_complexity 1 28 0 255 31 0 0 chr4 46765236 46765268 -155563079 + (CA)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr4 46765495 46765516 -155562831 + AT_rich Low_complexity Low_complexity 1 21 0 361 284 71 59 chr4 46766213 46766250 -155562097 - MLT1L LTR MaLR -6 505 470 1929 148 7 0 chr4 46766250 46766560 -155561787 + AluSx SINE Alu 1 312 0 361 284 71 59 chr4 46766560 46767025 -155561322 - MLT1L LTR MaLR -41 470 4 1588 232 46 0 chr4 46767226 46767575 -155560772 + MLT1A1 LTR MaLR 1 365 0 184 352 65 19 chr4 46769214 46769322 -155559025 + MIR SINE MIR 93 205 -57 1590 231 50 57 chr4 46769730 46770276 -155558071 - MER34 LTR ERV1 0 542 1 224 29 86 0 chr4 46771164 46771199 -155557148 + A-rich Low_complexity Low_complexity 2 39 0 21 0 0 0 chr4 46771206 46771227 -155557120 + AT_rich Low_complexity Low_complexity 1 21 0 237 185 19 0 chr4 46771270 46771324 -155557023 + T-rich Low_complexity Low_complexity 5 59 0 2819 6 0 10 chr4 46771731 46772045 -155556302 - AluYa5 SINE Alu 0 311 1 1723 201 22 6 chr4 46772548 46772907 -155555440 - MLT1A1 LTR MaLR 0 365 1 453 348 57 27 chr4 46773016 46773384 -155554963 + L2 LINE L2 2158 2536 -778 853 144 20 0 chr4 46773409 46773555 -155554792 - LTR52 LTR ERVL -3 418 270 57 28 0 0 chr4 46773991 46774062 -155554285 + AT_rich Low_complexity Low_complexity 1 71 0 216 352 67 21 chr4 46774121 46774314 -155554033 - L2 LINE L2 -527 2787 2586 1567 207 39 24 chr4 46774331 46774712 -155553635 + LTR52 LTR ERVL 32 418 -3 272 330 89 51 chr4 46774746 46775082 -155553265 - L2 LINE L2 -806 2508 2160 25 31 0 0 chr4 46775623 46775655 -155552692 + AT_rich Low_complexity Low_complexity 1 32 0 536 332 27 31 chr4 46775944 46776200 -155552147 + MIR SINE MIR 8 262 0 23 0 0 0 chr4 46777167 46777190 -155551157 + AT_rich Low_complexity Low_complexity 1 23 0 180 176 0 0 chr4 46779214 46779248 -155549099 + (CA)n Simple_repeat Simple_repeat 2 35 0 481 318 29 33 chr4 46779316 46779561 -155548786 - HAL1 LINE L1 -579 1928 1685 783 315 71 19 chr4 46779616 46780160 -155548187 - HERV16 LTR ERVL -1340 4424 3778 673 365 38 45 chr4 46780353 46780955 -155547392 - HERV16 LTR ERVL -4003 993 396 2187 123 3 0 chr4 46780961 46781263 -155547084 - AluSx SINE Alu -7 305 3 649 296 132 35 chr4 46781586 46781958 -155546389 - LTR16A LTR ERVL 0 457 50 343 220 135 14 chr4 46781969 46782110 -155546237 - HAL1 LINE L1 -821 1686 1529 1575 236 108 55 chr4 46782111 46782620 -155545727 + MLT1F1 LTR MaLR 7 567 0 188 35 35 0 chr4 46782694 46782723 -155545624 + (TC)n Simple_repeat Simple_repeat 2 31 0 547 260 123 50 chr4 46782724 46783226 -155545121 - HAL1 LINE L1 -1052 1455 895 367 286 69 37 chr4 46783238 46783427 -155544920 - HAL1 LINE L1 -1852 655 461 1426 289 77 43 chr4 46783510 46784071 -155544276 - MLT1G LTR MaLR -2 588 9 1313 142 59 1 chr4 46784606 46785032 -155543315 + LTR54 LTR ERV1 1 510 0 180 326 0 0 chr4 46785973 46786022 -155542325 - MIR SINE MIR -96 166 118 226 398 0 0 chr4 46786159 46786252 -155542095 + MER5A DNA MER1_type 69 161 -28 717 136 7 14 chr4 46786254 46786401 -155541946 + (TTCC)n Simple_repeat Simple_repeat 3 148 0 793 199 18 0 chr4 46786422 46786703 -155541644 + CT-rich Low_complexity Low_complexity 1 286 0 2121 103 3 28 chr4 46786829 46787148 -155541199 - AluY SINE Alu 0 311 1 234 62 0 0 chr4 46787566 46787598 -155540749 + (T)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr4 46788063 46788084 -155540263 + AT_rich Low_complexity Low_complexity 1 21 0 334 298 7 53 chr4 46789414 46789512 -155538835 - MIR SINE MIR -3 259 169 1647 221 121 43 chr4 46789512 46790091 -155538256 + MLT1E2 LTR MaLR 1 624 -2 334 298 7 53 chr4 46790091 46790143 -155538204 - MIR SINE MIR -93 169 116 264 203 62 31 chr4 46790168 46790232 -155538115 + L2 LINE L2 3207 3272 0 1706 88 4 8 chr4 46792359 46792598 -155535749 + AluSq SINE Alu 1 238 -75 1905 111 46 0 chr4 46792643 46792923 -155535424 + AluSp SINE Alu 16 308 -5 21 0 0 0 chr4 46793322 46793343 -155535004 + AT_rich Low_complexity Low_complexity 1 21 0 1112 214 109 19 chr4 46793938 46794251 -155534096 - L1MD3 LINE L1 -263 7732 7392 1794 217 44 28 chr4 46794262 46794719 -155533628 + L1ME1 LINE L1 5698 6161 -5 793 299 148 17 chr4 46794872 46795290 -155533057 + LTR16C LTR ERVL 5 477 -14 1414 198 90 32 chr4 46795451 46795851 -155532496 + MER31B LTR ERV1 1 423 -43 1835 118 3 112 chr4 46796933 46797272 -155531075 + AluSq SINE Alu 2 303 0 27 29 0 0 chr4 46797308 46797342 -155531005 + AT_rich Low_complexity Low_complexity 1 34 0 241 343 50 50 chr4 46797903 46798101 -155530246 + MIR SINE MIR 14 211 -51 348 293 122 11 chr4 46798178 46798359 -155529988 + MIR SINE MIR 38 238 -24 822 289 91 0 chr4 46798409 46798641 -155529706 - MIR SINE MIR -8 254 2 3332 144 24 14 chr4 46798799 46798907 -155529440 + L1MA7 LINE L1 5675 5780 -511 990 23 30 0 chr4 46798907 46799039 -155529308 + (TCTA)n Simple_repeat Simple_repeat 3 138 0 3332 144 24 14 chr4 46799039 46799513 -155528834 + L1MA7 LINE L1 5780 6263 -28 21 0 0 0 chr4 46799612 46799633 -155528714 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 46800453 46800482 -155527865 + AT_rich Low_complexity Low_complexity 1 29 0 255 273 0 0 chr4 46801598 46801653 -155526694 - L2 LINE L2 -15 3257 3203 1731 143 63 38 chr4 46802181 46802546 -155525801 + THE1C LTR MaLR 1 374 -1 291 277 24 12 chr4 46802588 46802671 -155525676 + MIR3 SINE MIR 114 197 -11 2764 22 0 0 chr4 46803791 46804113 -155524234 + L1PA4 LINE L1 5833 6154 -1 232 271 122 80 chr4 46804375 46804563 -155523784 + MIR SINE MIR 26 221 -41 2207 120 3 0 chr4 46804760 46805069 -155523278 - AluSq SINE Alu -3 310 1 26 30 0 0 chr4 46805291 46805324 -155523023 + AT_rich Low_complexity Low_complexity 1 33 0 337 323 30 15 chr4 46807042 46807175 -155521172 - MLT2E LTR ERVL -456 172 38 2071 85 0 41 chr4 46807953 46808305 -155520042 + AluY SINE Alu 1 340 0 2090 108 0 10 chr4 46809314 46809628 -155518719 + AluYa5 SINE Alu 1 311 0 237 185 19 0 chr4 46810035 46810089 -155518258 + A-rich Low_complexity Low_complexity 5 59 0 21 0 0 0 chr4 46810132 46810153 -155518194 + AT_rich Low_complexity Low_complexity 1 21 0 224 29 86 0 chr4 46810160 46810195 -155518152 + T-rich Low_complexity Low_complexity 2 39 0 876 200 45 10 chr4 46811083 46811283 -155517064 + MER34 LTR ERV1 1 207 -335 26899 82 15 2 chr4 46811386 46814732 -155513615 - HERVL LTR ERVL -1024 4630 1237 1745 122 3 113 chr4 46814732 46815068 -155513279 - AluSx SINE Alu -3 299 1 26899 82 15 2 chr4 46815068 46815227 -155513120 - HERVL LTR ERVL -4417 1237 1081 39 0 0 0 chr4 46815238 46815277 -155513070 + AT_rich Low_complexity Low_complexity 1 39 0 463 32 114 13 chr4 46815282 46815440 -155512907 + (TA)n Simple_repeat Simple_repeat 1 174 0 414 106 50 38 chr4 46815412 46815572 -155512775 + (TATAA)n Simple_repeat Simple_repeat 5 166 0 * 217 121 64 29 chr4 46815602 46815742 -155512605 + (TATAA)n Simple_repeat Simple_repeat 3 147 0 218 150 50 0 chr4 46815901 46815941 -155512406 - MIR SINE MIR -1 261 220 671 270 17 6 chr4 46815973 46816147 -155512200 + AluJb SINE Alu 129 304 -8 683 152 0 8 chr4 46816172 46816304 -155512043 + GA-rich Low_complexity Low_complexity 1 131 0 276 349 38 23 chr4 46816304 46816436 -155511911 - MIR SINE MIR -128 134 1 225 65 0 0 chr4 46818513 46818544 -155509803 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 676 33 0 22 chr4 46819034 46819126 -155509221 + L1MA1 LINE L1 6209 6298 -4 21 36 0 0 chr4 46819981 46820009 -155508338 + AT_rich Low_complexity Low_complexity 1 28 0 2919 92 7 9 chr4 46821209 46821631 -155506716 - L1MA1 LINE L1 0 6302 5882 26 0 0 0 chr4 46822536 46822562 -155505785 + AT_rich Low_complexity Low_complexity 1 26 0 1112 159 0 17 chr4 46823432 46823608 -155504739 - AluJo SINE Alu -16 296 124 2251 212 29 46 chr4 46823653 46823697 -155504650 - MLT2B2 LTR ERVL 0 515 472 614 84 0 21 chr4 46823697 46823792 -155504555 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 2251 212 29 46 chr4 46823792 46824271 -155504076 - MLT2B2 LTR ERVL -43 472 1 1813 175 0 3 chr4 46824342 46824634 -155503713 + AluSx SINE Alu 1 291 -21 184 333 33 11 chr4 46824754 46824844 -155503503 - MIR SINE MIR -11 251 160 363 200 0 0 chr4 46825064 46825139 -155503208 - L1PA10 LINE L1 -1869 4277 4203 5933 146 35 6 chr4 46825140 46826975 -155501372 + L1PA10 LINE L1 4278 6160 -8 389 290 103 27 chr4 46827202 46827440 -155500907 + MLT1H LTR MaLR 47 267 -142 598 224 147 39 chr4 46828098 46828254 -155500093 - MER5A DNA MER1_type 0 189 17 207 348 96 39 chr4 46829551 46829833 -155498514 + L2 LINE L2 2597 2894 -420 392 273 154 36 chr4 46829876 46830096 -155498251 + L1M4 LINE L1 4341 4586 -1560 417 155 21 10 chr4 46832239 46832336 -155496011 + (TATG)n Simple_repeat Simple_repeat 3 100 0 288 0 0 0 chr4 46833472 46833504 -155494843 + (TC)n Simple_repeat Simple_repeat 2 33 0 * 522 86 0 0 chr4 46833503 46833584 -155494763 + (TA)n Simple_repeat Simple_repeat 2 82 0 203 324 0 29 chr4 46833755 46833823 -155494524 - L2 LINE L2 -16 3297 3232 352 306 188 16 chr4 46833896 46834151 -155494196 - L2 LINE L2 -1 3312 3014 257 250 0 16 chr4 46834867 46834931 -155493416 - L2 LINE L2 0 3313 3251 184 328 148 0 chr4 46835879 46835940 -155492407 - MIR SINE MIR -107 101 32 423 238 91 21 chr4 46836097 46836240 -155492107 + MLT1C LTR MaLR 1 153 -314 263 203 91 161 chr4 46838934 46839077 -155489270 - MIR SINE MIR -82 180 48 194 396 0 11 chr4 46840706 46840797 -155487550 - MIR SINE MIR -116 146 57 702 269 52 0 chr4 46840871 46841064 -155487283 + MIR SINE MIR 14 216 -46 242 288 42 34 chr4 46841100 46841218 -155487129 + L2 LINE L2 2222 2340 -974 2378 230 33 29 chr4 46841224 46841751 -155486596 + MER90 LTR ERV1 1 532 -82 1874 184 74 2 chr4 46841751 46842154 -155486193 - MSTB1 LTR MaLR 0 432 1 2378 230 33 29 chr4 46842154 46842238 -155486109 + MER90 LTR ERV1 532 614 0 3883 155 52 8 chr4 46842556 46843353 -155484994 + Tigger3b DNA MER2_type 1 847 -384 672 199 262 19 chr4 46843353 46843559 -155484788 + MSTB LTR MaLR 1 256 -170 317 48 0 0 chr4 46843559 46843601 -155484746 - MADE1 DNA Mariner -35 45 4 3012 218 48 11 chr4 46843604 46844229 -155484118 + MSTA-int LTR MaLR 620 1267 -384 2114 154 36 33 chr4 46844229 46844592 -155483755 - THE1B LTR MaLR 0 364 1 2284 128 8 28 chr4 46844592 46844983 -155483364 + MSTA-int LTR MaLR 1263 1645 -6 1929 152 119 35 chr4 46844988 46845162 -155483185 + MSTA LTR MaLR 1 159 -269 2712 16 0 3 chr4 46845162 46845467 -155482880 + AluYb8 SINE Alu 1 304 -14 1929 152 119 35 chr4 46845467 46845687 -155482660 + MSTA LTR MaLR 159 428 0 2205 164 46 5 chr4 46845688 46846061 -155482286 + Tigger3b DNA MER2_type 844 1231 0 540 242 24 0 chr4 46846118 46846242 -155482105 - MER94 DNA DNA -7 127 1 487 316 30 6 chr4 46847991 46848159 -155480188 + MLT1F LTR MaLR 1 172 -370 408 176 0 0 chr4 46848163 46848231 -155480116 + AluJ/FRAM SINE Alu 231 298 -14 1917 226 35 41 chr4 46848255 46848796 -155479551 + LTR55 LTR ERV 1 538 -10 1034 256 142 15 chr4 46848816 46849148 -155479199 + MLT1F LTR MaLR 169 542 0 26 0 0 0 chr4 46849290 46849316 -155479031 + AT_rich Low_complexity Low_complexity 1 26 0 1926 106 50 3 chr4 46850024 46850307 -155478040 + AluSg1 SINE Alu 1 296 -13 292 342 26 17 chr4 46850456 46850573 -155477774 - L2 LINE L2 -1 3312 3195 23 33 0 0 chr4 46850778 46850808 -155477539 + AT_rich Low_complexity Low_complexity 1 30 0 521 308 32 32 chr4 46851020 46851267 -155477080 + MER102a DNA MER1_type 81 327 -3 228 285 138 16 chr4 46851704 46851827 -155476520 - MIR SINE MIR 0 262 125 22 35 0 0 chr4 46852388 46852417 -155475930 + AT_rich Low_complexity Low_complexity 1 29 0 2152 133 33 11 chr4 46854164 46854531 -155473816 + THE1C LTR MaLR 1 375 0 6481 164 37 52 chr4 46854532 46855930 -155472417 + THE1C-int LTR MaLR 2 1378 -202 1755 180 31 52 chr4 46855930 46856269 -155472078 + THE1C LTR MaLR 1 333 -42 1736 199 43 6 chr4 46856269 46856620 -155471727 - THE1B LTR MaLR 0 364 1 1755 180 31 52 chr4 46856620 46856663 -155471684 + THE1C LTR MaLR 333 375 0 1225 154 0 5 chr4 46856663 46856871 -155471476 + THE1C-int LTR MaLR 1374 1580 0 2093 154 27 11 chr4 46856871 46857240 -155471107 + THE1C LTR MaLR 1 375 0 268 296 139 17 chr4 46857240 46857355 -155470992 + MIR SINE MIR 5 133 -129 2254 97 0 0 chr4 46857714 46858013 -155470334 + AluY SINE Alu 1 299 -12 2114 212 63 2 chr4 46858091 46858649 -155469698 + L1MA4 LINE L1 2288 2908 -3238 10805 182 27 16 chr4 46859629 46861429 -155466918 + L1MA4 LINE L1 2924 4703 -1597 194 0 39 0 chr4 46861429 46861455 -155466892 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 10805 182 27 16 chr4 46861455 46862293 -155466054 + L1MA4 LINE L1 4703 5530 -770 2213 125 0 3 chr4 46862293 46862606 -155465741 - AluSx SINE Alu 0 312 1 10805 182 27 16 chr4 46862606 46862801 -155465546 + L1MA4 LINE L1 5530 5721 -579 258 32 0 0 chr4 46862801 46862832 -155465515 + (CA)n Simple_repeat Simple_repeat 2 32 0 10805 182 27 16 chr4 46862832 46863327 -155465020 + L1MA4 LINE L1 5721 6293 -7 1347 205 7 41 chr4 46863353 46863646 -155464701 + AluJo SINE Alu 1 283 -29 189 74 0 0 chr4 46863932 46863959 -155464388 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2957 9 0 0 chr4 46863959 46864293 -155464054 - L1PA2 LINE L1 -11 6144 5811 2847 186 30 32 chr4 46864293 46864917 -155463430 + MER67C LTR ERV1 88 710 0 1770 148 29 60 chr4 46865017 46865402 -155462945 - THE1C LTR MaLR 0 375 3 9148 141 47 8 chr4 46865404 46866534 -155461813 - THE1C-int LTR MaLR 0 1580 495 2007 141 0 0 chr4 46866534 46866824 -155461523 - AluSx SINE Alu -17 295 6 9148 141 47 8 chr4 46866824 46866889 -155461458 - THE1C-int LTR MaLR -1085 495 434 4961 83 22 8 chr4 46866889 46867601 -155460746 - LTR30 LTR ERV1 0 722 1 9148 141 47 8 chr4 46867601 46867926 -155460421 - THE1C-int LTR MaLR -1146 434 1 1838 168 21 37 chr4 46867926 46868306 -155460041 - THE1C LTR MaLR 0 375 2 657 251 48 139 chr4 46868465 46868796 -155459551 + L1M4b LINE L1 18 318 -6541 807 207 49 32 chr4 46868805 46869090 -155459257 + L1M4b LINE L1 1526 1815 -5040 31 0 0 0 chr4 46869268 46869299 -155459048 + AT_rich Low_complexity Low_complexity 1 31 0 2557 49 0 3 chr4 46869825 46870132 -155458215 - AluY SINE Alu -5 306 1 219 235 0 0 chr4 46871336 46871387 -155456960 + (TG)n Simple_repeat Simple_repeat 1 51 0 235 277 62 0 chr4 46872090 46872155 -155456192 + L2 LINE L2 3245 3313 0 297 328 135 10 chr4 46872506 46872727 -155455620 - MIR SINE MIR -2 260 15 1649 211 71 14 chr4 46873110 46873474 -155454873 - MLT1B LTR MaLR 0 390 6 21 0 0 0 chr4 46874405 46874426 -155453921 + AT_rich Low_complexity Low_complexity 1 21 0 188 83 0 28 chr4 46875201 46875237 -155453110 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6711 74 5 2 chr4 46875239 46876593 -155451754 - L1PA7 LINE L1 -7 6147 4791 1373 226 35 73 chr4 46877062 46877461 -155450886 + MLT1B LTR MaLR 2 385 -5 33 73 0 0 chr4 46878214 46878282 -155450065 + AT_rich Low_complexity Low_complexity 1 68 0 349 366 31 7 chr4 46880761 46881048 -155447299 + L1ME LINE L1 5526 5819 -302 4246 176 53 6 chr4 46881068 46881896 -155446451 + L1MC1 LINE L1 5467 6333 0 3212 123 15 2 chr4 46882034 46882514 -155445833 + LTR15 LTR ERV1 1 486 -7 280 314 78 31 chr4 46882628 46882886 -155445461 + L1MEd LINE L1 561 830 -5289 1980 122 9 28 chr4 46882999 46883320 -155445027 + LTR15 LTR ERV1 172 486 -7 293 280 116 49 chr4 46883434 46883881 -155444466 + L1MEd LINE L1 561 1037 -5082 349 243 79 29 chr4 46884038 46884178 -155444169 - MLT1F1 LTR MaLR -113 454 308 391 232 0 0 chr4 46884473 46884555 -155443792 + Tigger5 DNA MER2_type 2241 2322 -1 461 311 56 0 chr4 46884720 46884819 -155443528 + MIR SINE MIR 20 133 -129 1412 204 128 85 chr4 46884819 46885303 -155443044 - MLT1D LTR MaLR 0 505 1 461 311 56 0 chr4 46885303 46885364 -155442983 + MIR SINE MIR 133 189 -73 28 0 0 0 chr4 46885407 46885435 -155442912 + AT_rich Low_complexity Low_complexity 1 28 0 1712 197 134 8 chr4 46885966 46886346 -155442001 + LTR3 LTR ERVK 5 432 0 524 311 94 24 chr4 46886761 46887106 -155441241 - HERV16 LTR ERVL -2261 2735 2397 294 201 201 62 chr4 46887137 46887281 -155441066 - L1M4 LINE L1 -837 5309 5146 441 376 25 10 chr4 46887356 46887553 -155440794 - HERV16 LTR ERVL -2777 2219 2020 548 331 5 0 chr4 46887656 46887840 -155440507 - HERV16 LTR ERVL -3039 1957 1773 924 337 57 14 chr4 46888080 46888570 -155439777 - HERV16 LTR ERVL -4484 512 2 403 339 132 23 chr4 46888573 46888877 -155439470 - LTR16A LTR ERVL -2 448 112 22 35 0 0 chr4 46889020 46889049 -155439298 + AT_rich Low_complexity Low_complexity 1 29 0 357 250 41 78 chr4 46889197 46889431 -155438916 - MER5C DNA MER1_type -3 321 5 306 304 6 35 chr4 46889431 46889669 -155438678 - L1MDb LINE L1 -5021 1375 1137 22 94 0 0 chr4 46890235 46890299 -155438048 + AT_rich Low_complexity Low_complexity 1 64 0 329 324 20 0 chr4 46890392 46890494 -155437853 + ERVL LTR ERVL 3314 3417 -2347 317 354 29 17 chr4 46890613 46890788 -155437559 + L1ME3A LINE L1 5706 5882 -288 226 78 62 16 chr4 46890870 46890934 -155437413 + (TA)n Simple_repeat Simple_repeat 1 67 0 368 337 67 6 chr4 46891236 46891414 -155436933 + LTR33 LTR ERVL 1 189 -332 266 177 104 52 chr4 46891533 46891629 -155436718 + LTR33A LTR ERVL 327 427 -96 192 369 148 17 chr4 46893017 46893193 -155435154 - L2 LINE L2 -414 2900 2702 508 371 38 4 chr4 46893843 46894083 -155434264 - MIR SINE MIR 0 262 15 229 126 57 40 chr4 46894723 46894898 -155433449 + (TA)n Simple_repeat Simple_repeat 2 179 0 * 258 96 72 24 chr4 46894863 46894988 -155433359 + (TTATA)n Simple_repeat Simple_repeat 1 131 0 383 211 20 20 chr4 46894990 46895142 -155433205 + (TATAA)n Simple_repeat Simple_repeat 3 154 0 347 95 101 0 chr4 46895152 46895310 -155433037 + (TA)n Simple_repeat Simple_repeat 2 175 0 40 21 0 0 chr4 46895310 46895357 -155432990 + AT_rich Low_complexity Low_complexity 1 47 0 328 92 98 6 chr4 46895357 46895521 -155432826 + (TA)n Simple_repeat Simple_repeat 2 180 0 290 178 35 11 chr4 46895547 46895721 -155432626 + (TA)n Simple_repeat Simple_repeat 2 179 0 229 156 92 18 chr4 46895734 46895843 -155432504 + (TTATA)n Simple_repeat Simple_repeat 5 121 0 324 77 87 0 chr4 46895848 46895952 -155432395 + (TA)n Simple_repeat Simple_repeat 1 113 0 67 42 0 0 chr4 46895955 46896050 -155432297 + AT_rich Low_complexity Low_complexity 1 95 0 2946 85 18 5 chr4 46896050 46896448 -155431899 - MLT2A1 LTR ERVL -41 403 1 1677 174 31 29 chr4 46897894 46898280 -155430067 - L1MA7 LINE L1 -1 6290 5904 293 200 0 0 chr4 46898283 46898343 -155430004 + L1MA7 LINE L1 5832 5891 -421 496 353 173 12 chr4 46899746 46900225 -155428122 + LTR67 LTR ERVL 1 556 -1 213 39 0 0 chr4 46900414 46900440 -155427907 + (TG)n Simple_repeat Simple_repeat 2 27 0 737 300 14 0 chr4 46900902 46901125 -155427222 - LTR16A LTR ERVL 0 450 225 516 291 78 19 chr4 46901222 46901490 -155426857 - LTR43 LTR ERV1 -132 470 187 481 306 25 20 chr4 46901815 46902014 -155426333 - LTR16A LTR ERVL -233 217 18 21 0 0 0 chr4 46902029 46902050 -155426297 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr4 46902074 46902105 -155426242 + (CA)n Simple_repeat Simple_repeat 2 32 0 52 85 0 0 chr4 46902193 46902322 -155426025 + AT_rich Low_complexity Low_complexity 1 129 0 24 0 0 0 chr4 46902880 46902904 -155425443 + AT_rich Low_complexity Low_complexity 1 24 0 30 0 0 0 chr4 46903040 46903070 -155425277 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr4 46903254 46903291 -155425056 + AT_rich Low_complexity Low_complexity 1 37 0 22 70 0 0 chr4 46903867 46903910 -155424437 + AT_rich Low_complexity Low_complexity 1 43 0 21 71 0 0 chr4 46905628 46905670 -155422677 + AT_rich Low_complexity Low_complexity 1 42 0 4441 197 32 41 chr4 46906104 46906259 -155422088 - L1MA9 LINE L1 -2 6310 6155 306 0 0 0 chr4 46906259 46906293 -155422054 + (TG)n Simple_repeat Simple_repeat 1 34 0 4441 197 32 41 chr4 46906293 46906409 -155421938 - L1MA9 LINE L1 -157 6155 6039 1863 149 7 0 chr4 46906409 46906704 -155421643 - AluSx SINE Alu -15 297 1 4441 197 32 41 chr4 46906704 46907110 -155421237 - L1MA9 LINE L1 -273 6039 5631 2412 74 3 0 chr4 46907110 46907420 -155420927 + AluY SINE Alu 1 311 0 4441 197 32 41 chr4 46907420 46908286 -155420061 - L1MA9 LINE L1 -681 5631 4790 1629 124 17 21 chr4 46908286 46908576 -155419771 - AluSc SINE Alu -15 294 6 4441 197 32 41 chr4 46908576 46909059 -155419288 - L1MA9 LINE L1 -1522 4790 4304 9455 168 29 5 chr4 46909090 46912035 -155416312 - L1MA1 LINE L1 -6 7715 4696 2155 107 3 83 chr4 46912037 46912411 -155415936 + LTR14A LTR ERVK 1 344 0 4634 96 3 8 chr4 46912411 46913055 -155415292 + HERVK14 LTR ERVK 1 641 -5304 1416 65 16 0 chr4 46913038 46913223 -155415124 + HERVK14 LTR ERVK 1366 1553 -4392 * 12591 67 0 32 chr4 46913226 46914959 -155413388 + HERVK14 LTR ERVK 3976 5579 -366 1226 165 14 14 chr4 46914961 46914992 -155413355 + PRIMA41-int LTR ERV1 7545 7756 0 1369 88 6 0 chr4 46914992 46915173 -155413174 + HERVK14 LTR ERVK 5578 5759 -186 315 210 0 16 chr4 46915173 46915235 -155413112 + MER41C LTR ERV1 1 61 -493 506 77 0 0 chr4 46915235 46915300 -155413047 + HERVK14 LTR ERVK 5822 5886 -59 718 326 19 16 chr4 46915342 46915664 -155412683 + HERVK14 LTR ERVK 7070 7392 -25 2292 78 3 83 chr4 46915676 46916048 -155412299 + LTR14A LTR ERVK 1 342 -2 18795 190 36 9 chr4 46916050 46920617 -155407730 - L1MA1 LINE L1 -2865 4700 13 4597 218 101 14 chr4 46920618 46921920 -155406427 - L1MA9 LINE L1 -1830 4316 2902 218 203 31 16 chr4 46922072 46922136 -155406211 + (TA)n Simple_repeat Simple_repeat 2 66 0 3586 109 5 35 chr4 46922295 46922866 -155405481 - MER41A LTR ERV1 0 554 1 23 0 0 0 chr4 46924036 46924059 -155404288 + AT_rich Low_complexity Low_complexity 1 23 0 235 276 55 87 chr4 46924777 46924904 -155403443 - MLT1K LTR MaLR -177 411 289 203 319 56 0 chr4 46925559 46925631 -155402716 - MER5A DNA MER1_type -27 162 87 21 0 0 0 chr4 46926019 46926040 -155402307 + AT_rich Low_complexity Low_complexity 1 21 0 215 167 21 0 chr4 46926125 46926173 -155402174 + (TA)n Simple_repeat Simple_repeat 2 50 0 23 0 0 0 chr4 46926317 46926340 -155402007 + AT_rich Low_complexity Low_complexity 1 23 0 473 291 72 45 chr4 46926513 46926778 -155401569 + L1ME LINE L1 817 1088 -4982 596 339 89 8 chr4 46926790 46927304 -155401043 + L1ME LINE L1 1193 1748 -4513 2387 136 22 2 chr4 46927306 46927712 -155400635 + L1MA3 LINE L1 5784 6197 -108 30 27 0 0 chr4 46927713 46927750 -155400597 + AT_rich Low_complexity Low_complexity 1 37 0 404 256 39 35 chr4 46927752 46927955 -155400392 + L1ME LINE L1 1749 1952 -4309 616 213 69 65 chr4 46927997 46928213 -155400134 + MLT1B LTR MaLR 1 217 -173 254 191 0 0 chr4 46928215 46928262 -155400085 + L1ME LINE L1 2072 2118 -3962 448 100 0 0 chr4 46928262 46928322 -155400025 - MSTA LTR MaLR 0 428 369 451 139 13 13 chr4 46928322 46928401 -155399946 - THE1C-int LTR MaLR -1500 80 2 1983 133 74 11 chr4 46928402 46928755 -155399592 - THE1C LTR MaLR 0 375 1 228 312 0 0 chr4 46929326 46929403 -155398944 - L1MEc LINE L1 -1541 4605 4529 725 322 51 19 chr4 46929428 46930216 -155398131 - L1MEc LINE L1 -2485 3661 2849 395 360 45 0 chr4 46930439 46930639 -155397708 - MIR SINE MIR -48 214 6 330 333 47 16 chr4 46930727 46930856 -155397491 + L2 LINE L2 2903 3035 -237 6648 76 16 4 chr4 46930863 46931866 -155396481 - L1PA7 LINE L1 0 6154 5147 4037 97 0 0 chr4 46931883 46932451 -155395896 + L1P LINE L1 4533 5100 -1046 595 277 117 39 chr4 46932550 46932965 -155395382 - L1MEc LINE L1 -3611 2535 2124 25 0 0 0 chr4 46932985 46933010 -155395337 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr4 46933726 46933764 -155394583 + AT_rich Low_complexity Low_complexity 1 38 0 390 314 15 7 chr4 46934200 46934337 -155394010 + MIR3 SINE MIR 67 204 -4 2008 61 51 24 chr4 46934403 46934696 -155393651 + AluY SINE Alu 1 301 -10 831 274 65 65 chr4 46935089 46935505 -155392842 - L2 LINE L2 0 3313 2898 1018 240 24 35 chr4 46935581 46935869 -155392478 - MLT1A1 LTR MaLR -8 357 73 1894 102 39 14 chr4 46936800 46937083 -155391264 + AluSq SINE Alu 23 312 -1 236 331 46 23 chr4 46938056 46938186 -155390161 - LTR16B LTR ERVL -147 317 185 28 86 0 0 chr4 46939160 46939230 -155389117 + AT_rich Low_complexity Low_complexity 1 70 0 456 313 45 28 chr4 46939388 46939564 -155388783 - MIR SINE MIR -48 214 36 186 256 33 83 chr4 46939745 46939866 -155388481 + MIR SINE MIR 148 262 0 367 229 201 45 chr4 46940474 46940653 -155387694 + MIR SINE MIR 1 207 -55 264 59 0 0 chr4 46941261 46941295 -155387052 + (CA)n Simple_repeat Simple_repeat 2 35 0 3505 133 71 16 chr4 46941526 46941941 -155386406 - L1MC1 LINE L1 -17 6316 5851 2587 87 3 11 chr4 46941941 46942298 -155386049 - THE1A LTR MaLR 0 355 2 3505 133 71 16 chr4 46942298 46942528 -155385819 - L1MC1 LINE L1 -482 5851 5635 499 339 91 4 chr4 46943107 46943152 -155385195 + MLT1J2 LTR MaLR 201 241 -209 823 193 30 30 chr4 46943152 46943354 -155384993 - MER105 DNA DNA -2 202 1 499 339 91 4 chr4 46943354 46943538 -155384809 + MLT1J2 LTR MaLR 241 450 0 1160 21 0 14 chr4 46943739 46943883 -155384464 - L1PA4 LINE L1 0 6155 6014 21 36 0 0 chr4 46944924 46944952 -155383395 + AT_rich Low_complexity Low_complexity 1 28 0 251 259 76 38 chr4 46944981 46945112 -155383235 - L2 LINE L2 -62 3251 3116 252 347 133 5 chr4 46945236 46945432 -155382915 - L2 LINE L2 -2618 696 476 528 350 70 60 chr4 46946208 46946853 -155381494 + L2 LINE L2 632 1282 -2032 815 367 113 15 chr4 46946871 46947817 -155380530 + L2 LINE L2 1792 2830 -484 300 344 63 28 chr4 46947938 46948191 -155380156 + L2 LINE L2 3047 3308 -5 2264 108 3 0 chr4 46948412 46948718 -155379629 + AluSx SINE Alu 3 309 -3 395 222 145 8 chr4 46948936 46949053 -155379294 - MER63 DNA MER1_type 0 1062 930 13603 85 15 3 chr4 46949154 46951435 -155376912 + HERVL LTR ERVL 2733 5034 -620 1684 213 19 62 chr4 46951537 46951959 -155376388 - MER67D LTR ERV1 -110 404 1 436 235 26 0 chr4 46952068 46952183 -155376164 - L1MC4 LINE L1 -124 7918 7801 623 191 18 12 chr4 46953018 46953186 -155375161 + CT-rich Low_complexity Low_complexity 4 172 0 3138 97 21 1 chr4 46953290 46953979 -155374368 - L1P3 LINE L1 -566 5588 4891 981 120 38 0 chr4 46954995 46955153 -155373194 - MER2 DNA MER2_type -136 209 46 335 122 0 0 chr4 46955156 46955205 -155373142 + L1M1 LINE L1 5651 5699 -603 354 234 45 9 chr4 46955443 46955554 -155372793 + L1MC4 LINE L1 7922 8036 -6 2264 86 0 7 chr4 46955592 46955893 -155372454 - AluY SINE Alu -12 299 1 358 368 187 20 chr4 46956179 46956478 -155371869 - L3 LINE CR1 -3 1574 1226 2528 146 38 11 chr4 46957504 46957955 -155370392 - L1PB3 LINE L1 -7 6147 5685 309 169 0 0 chr4 46958055 46958114 -155370233 + CT-rich Low_complexity Low_complexity 2 60 0 1686 161 0 11 chr4 46958122 46958395 -155369952 - AluSx SINE Alu -39 273 4 2421 149 18 25 chr4 46958453 46958890 -155369457 + Tigger2a DNA MER2_type 1 434 0 532 315 72 0 chr4 46958937 46959118 -155369229 - MER58C DNA MER1_type -1 214 21 244 330 60 10 chr4 46959611 46959711 -155368636 + L2 LINE L2 3209 3313 0 21 0 0 0 chr4 46960515 46960536 -155367811 + AT_rich Low_complexity Low_complexity 1 21 0 36 0 0 0 chr4 46960991 46961027 -155367320 + AT_rich Low_complexity Low_complexity 1 36 0 2257 95 0 0 chr4 46961124 46961419 -155366928 + AluSc SINE Alu 1 295 -14 22 35 0 0 chr4 46962600 46962629 -155365718 + AT_rich Low_complexity Low_complexity 1 29 0 842 292 77 9 chr4 46962763 46963112 -155365235 + ERVL LTR ERVL 5064 5436 -328 193 179 0 45 chr4 46963116 46963183 -155365164 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 2239 92 3 7 chr4 46963652 46963957 -155364390 - AluSg1 SINE Alu -5 304 1 838 55 0 0 chr4 46964297 46964406 -155363941 + L1PA6 LINE L1 6046 6154 0 521 257 105 0 chr4 46965004 46965175 -155363172 - MER5A DNA MER1_type 0 189 1 1361 216 50 47 chr4 46965366 46965728 -155362619 + MLT1A1 LTR MaLR 3 365 0 1811 189 19 22 chr4 46965955 46966321 -155362026 + MLT1A1 LTR MaLR 1 365 0 671 304 117 26 chr4 46966326 46966711 -155361636 + MLT1J2 LTR MaLR 1 420 -30 221 176 0 20 chr4 46966724 46966775 -155361572 + (TATG)n Simple_repeat Simple_repeat 3 52 0 439 342 86 6 chr4 46966825 46967069 -155361278 + MLT1H1 LTR MaLR 2 303 -292 1644 188 44 29 chr4 46967186 46967527 -155360820 - THE1B LTR MaLR 0 364 19 10822 112 9 5 chr4 46967530 46969098 -155359249 - THE1B-int LTR MaLR -6 1574 1 398 169 0 0 chr4 46969098 46969163 -155359184 - THE1C LTR MaLR 0 364 300 * 1100 134 6 0 chr4 46969160 46969317 -155359030 - THE1C LTR MaLR -216 159 2 748 333 77 16 chr4 46969789 46970216 -155358131 - MER20B DNA MER1_type -328 455 3 193 370 62 0 chr4 46970218 46970299 -155358048 - L2 LINE L2 -504 2810 2725 803 275 95 75 chr4 46970371 46970825 -155357522 - L2 LINE L2 -599 2715 2253 593 321 14 24 chr4 46970845 46971057 -155357290 - MLT2E LTR ERVL -206 422 213 1724 135 193 11 chr4 46971127 46971489 -155356858 - MSTA LTR MaLR 0 428 1 186 351 33 60 chr4 46971775 46971926 -155356421 - MIR SINE MIR -62 200 54 324 340 58 5 chr4 46972787 46972978 -155355369 + MIR SINE MIR 54 254 -8 228 390 49 16 chr4 46973198 46973321 -155355026 - L2 LINE L2 -1 3271 3145 237 359 0 0 chr4 46973381 46973459 -155354888 + MER5A DNA MER1_type 112 189 0 1913 101 7 0 chr4 46973614 46973891 -155354456 - L1PA13 LINE L1 -3 6160 5882 3488 243 82 58 chr4 46974021 46975783 -155352564 + L1ME1 LINE L1 3014 4817 -1329 1402 234 6 30 chr4 46975791 46976124 -155352223 - MLT1B LTR MaLR -4 386 62 1066 282 26 53 chr4 46976135 46976589 -155351758 + L1ME1 LINE L1 5675 6116 -50 272 200 0 0 chr4 46976651 46976701 -155351646 - Alu SINE Alu -5 296 247 8410 26 0 0 chr4 46977505 46978513 -155349834 - L1PA4 LINE L1 -788 5358 4351 2491 37 0 0 chr4 46978514 46978809 -155349538 + L1PA4 LINE L1 5367 5661 -494 2196 51 0 0 chr4 46978909 46979182 -155349165 + L1PA4 LINE L1 5880 6152 -3 23 0 0 0 chr4 46979628 46979651 -155348696 + AT_rich Low_complexity Low_complexity 1 23 0 325 287 48 43 chr4 46980432 46980620 -155347727 + L1M4 LINE L1 2200 2388 -3758 1509 172 40 23 chr4 46980880 46981182 -155347165 + AluJb SINE Alu 1 307 -5 295 343 29 0 chr4 46981388 46981525 -155346822 + L1ME LINE L1 5507 5647 -474 31 68 0 0 chr4 46982643 46982702 -155345645 + AT_rich Low_complexity Low_complexity 1 59 0 32 26 0 0 chr4 46982745 46982784 -155345563 + AT_rich Low_complexity Low_complexity 1 39 0 870 122 64 0 chr4 46983836 46983992 -155344355 + L1MA4A LINE L1 6132 6297 -6 34 24 0 0 chr4 46984024 46984065 -155344282 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chr4 46984098 46984127 -155344220 + AT_rich Low_complexity Low_complexity 1 29 0 186 303 105 13 chr4 46984430 46984506 -155343841 + L2 LINE L2 3213 3295 -18 24 0 0 0 chr4 46985187 46985211 -155343136 + AT_rich Low_complexity Low_complexity 1 24 0 548 308 106 40 chr4 46985219 46985671 -155342676 + L2 LINE L2 1811 2292 -1022 5275 55 1 199 chr4 46987411 46988441 -155339906 + LTR12 LTR ERV1 1 826 0 1642 160 18 24 chr4 47039183 47039514 -155288833 + L1MA7 LINE L1 5962 6290 -1 22 35 0 0 chr4 47039754 47039783 -155288564 + AT_rich Low_complexity Low_complexity 1 29 0 916 198 210 21 chr4 47039960 47040288 -155288059 - MER63D DNA MER1_type -629 432 43 325 294 33 0 chr4 47040288 47040380 -155287967 + (CATG)n Simple_repeat Simple_repeat 1 95 0 191 167 0 42 chr4 47040530 47040578 -155287769 + (CATA)n Simple_repeat Simple_repeat 3 48 0 285 225 14 14 chr4 47040580 47040651 -155287696 - MER63D DNA MER1_type -988 73 3 654 298 58 10 chr4 47040805 47041010 -155287337 + MIR SINE MIR 13 227 -35 7579 25 1 1 chr4 47041262 47042913 -155285434 - L1PA3 LINE L1 -3 6152 4505 6349 16 3 1 chr4 47043013 47043761 -155284586 - L1P LINE L1 -890 5256 4508 11127 194 15 19 chr4 47043761 47046452 -155281895 + L1M1 LINE L1 2799 5442 -743 7461 36 1 0 chr4 47046452 47047420 -155280927 + L1PA3 LINE L1 5184 6152 -3 627 279 26 11 chr4 47048464 47048654 -155279693 - MIR SINE MIR -50 212 20 459 0 0 0 chr4 47048837 47048888 -155279459 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2018 130 14 0 chr4 47048994 47049287 -155279060 + AluSx SINE Alu 4 300 -12 356 261 9 118 chr4 47049504 47049715 -155278632 + MIR SINE MIR 68 255 -7 2217 108 0 19 chr4 47050177 47050491 -155277856 - AluSg SINE Alu -2 308 1 1735 227 117 8 chr4 47051136 47051616 -155276731 + MER34 LTR ERV1 11 542 0 391 325 36 7 chr4 47052048 47052200 -155276147 + LTR67 LTR ERVL 347 502 -55 309 85 0 0 chr4 47052386 47052433 -155275914 + Alu SINE Alu 1 47 -254 * 339 132 0 0 chr4 47052431 47052484 -155275863 - Alu SINE Alu -249 53 1 6672 65 7 0 chr4 47052491 47053525 -155274822 - L1PA6 LINE L1 -5 6149 5119 186 118 0 0 chr4 47054906 47054940 -155273407 + (CAGAGA)n Simple_repeat Simple_repeat 1 34 0 21 36 0 0 chr4 47055423 47055451 -155272896 + AT_rich Low_complexity Low_complexity 1 28 0 1701 172 31 16 chr4 47055755 47056075 -155272272 - THE1C LTR MaLR 0 375 51 34748 53 2 0 chr4 47056176 47060531 -155267816 - L1P LINE L1 -1780 4366 1 916 259 118 94 chr4 47060638 47061189 -155267158 - MLT1E LTR MaLR 0 567 4 301 379 38 24 chr4 47062312 47062523 -155265824 - MLT1I LTR MaLR -53 356 143 349 263 0 12 chr4 47062551 47062631 -155265716 - MLT1I LTR MaLR -328 81 3 333 291 51 0 chr4 47062632 47062749 -155265598 - MIR SINE MIR -59 203 81 2076 164 42 40 chr4 47062749 47063298 -155265049 - MLT2A2 LTR ERVL 0 554 1 25 0 0 0 chr4 47064042 47064067 -155264280 + AT_rich Low_complexity Low_complexity 1 25 0 201 39 0 0 chr4 47064959 47064985 -155263362 + (TG)n Simple_repeat Simple_repeat 1 26 0 822 232 143 15 chr4 47065109 47065437 -155262910 - LTR37B LTR ERV1 0 468 99 399 303 123 50 chr4 47065715 47066472 -155261875 + L1MEd LINE L1 441 1252 -4867 492 182 11 11 chr4 47067383 47067471 -155260876 - MER119 DNA MER1_type 0 583 496 1516 181 0 36 chr4 47068601 47068878 -155259469 - AluJo SINE Alu -33 279 13 2269 144 83 5 chr4 47068936 47069333 -155259014 + MSTA LTR MaLR 1 428 0 7518 196 51 20 chr4 47069333 47070934 -155257413 + MSTA-int LTR MaLR 1 1651 0 2390 118 75 8 chr4 47070936 47071335 -155257012 + MSTA LTR MaLR 3 428 0 1861 197 103 7 chr4 47073254 47073661 -155254686 - Tigger2 DNA MER2_type 0 2718 2273 375 214 0 0 chr4 47073650 47073720 -155254627 + MER8 DNA MER2_type 170 239 0 * 23 68 0 0 chr4 47074498 47074542 -155253805 + AT_rich Low_complexity Low_complexity 1 44 0 352 331 85 87 chr4 47074989 47075048 -155253299 - L2 LINE L2 -481 2833 2775 2764 13 0 0 chr4 47075048 47075351 -155252996 - AluY SINE Alu -8 303 1 352 331 85 87 chr4 47075351 47076000 -155252347 - L2 LINE L2 -539 2775 2127 5697 146 23 32 chr4 47076279 47077358 -155250989 - MER11C LTR ERVK 0 1071 3 351 290 22 40 chr4 47077534 47077698 -155250649 - MIR SINE MIR -58 204 37 249 241 19 0 chr4 47077900 47077954 -155250393 - L2 LINE L2 -52 3261 3207 19752 47 5 1 chr4 47078439 47080964 -155247383 - L1P LINE L1 -836 5310 2776 279 273 67 47 chr4 47081437 47081587 -155246760 - L2 LINE L2 -55 3258 3106 1807 243 94 24 chr4 47082387 47082688 -155245659 + MER21B LTR ERV1 12 291 -572 189 0 0 0 chr4 47082688 47082709 -155245638 + (CCA)n Simple_repeat Simple_repeat 1 21 0 1807 243 94 24 chr4 47082709 47083075 -155245272 + MER21B LTR ERV1 291 794 -69 463 331 24 0 chr4 47083392 47083561 -155244786 - MER5B DNA MER1_type 0 178 6 7463 43 0 0 chr4 47083951 47085245 -155243102 - L1PA5 LINE L1 0 6154 4861 14515 55 5 0 chr4 47085245 47087104 -155241243 + L1PA5 LINE L1 3022 4890 -1256 193 342 171 8 chr4 47087351 47087468 -155240879 - L2 LINE L2 -16 3297 3162 2137 109 3 29 chr4 47087786 47088097 -155240250 + AluSx SINE Alu 6 308 -4 362 221 35 18 chr4 47088334 47088447 -155239900 - Charlie1a DNA MER1_type 0 1455 1341 853 228 0 0 chr4 47088493 47088686 -155239661 - L1P LINE L1 -1007 5139 4947 2974 226 45 28 chr4 47088720 47089630 -155238717 - Charlie1a DNA MER1_type -112 1343 418 661 287 22 0 chr4 47089638 47089819 -155238528 - Charlie1a DNA MER1_type -1259 196 12 1070 229 119 21 chr4 47089906 47090243 -155238104 + MLT1A2 LTR MaLR 1 370 -4 22 0 0 0 chr4 47090361 47090383 -155237964 + AT_rich Low_complexity Low_complexity 1 22 0 210 430 0 0 chr4 47090679 47090779 -155237568 - L2 LINE L2 -24 3289 3190 331 335 61 6 chr4 47092297 47092461 -155235886 - MIR SINE MIR -74 188 16 24 0 0 0 chr4 47092676 47092700 -155235647 + AT_rich Low_complexity Low_complexity 1 24 0 4305 132 34 18 chr4 47092700 47092714 -155235633 - L1MA3 LINE L1 -2 6303 6291 2144 123 0 10 chr4 47092714 47093022 -155235325 + AluSq SINE Alu 1 305 -8 4305 132 34 18 chr4 47093022 47093775 -155234572 - L1MA3 LINE L1 -14 6291 5524 687 83 0 10 chr4 47093875 47093971 -155234376 - AluS SINE Alu -218 95 1 5930 226 69 59 chr4 47093988 47096262 -155232085 - L1MA3 LINE L1 -812 5334 3038 2191 127 0 0 chr4 47096684 47096992 -155231355 + AluSx SINE Alu 3 310 -2 710 256 133 50 chr4 47097420 47097803 -155230544 + MSTC LTR MaLR 1 415 -13 6130 236 85 30 chr4 47097804 47099442 -155228905 + MLT1A1-int LTR MaLR 2 1728 -7 730 231 34 130 chr4 47099448 47099803 -155228544 + MLT1A1 LTR MaLR 1 321 -44 274 374 98 6 chr4 47099864 47100038 -155228309 + MIR SINE MIR 59 248 -14 214 224 41 0 chr4 47101236 47101285 -155227062 + CT-rich Low_complexity Low_complexity 1 51 0 275 275 18 9 chr4 47101710 47101819 -155226528 + L1ME3A LINE L1 4478 4587 -1559 366 248 25 8 chr4 47101860 47101981 -155226366 + L1ME3A LINE L1 5732 5854 -316 22 56 0 0 chr4 47102370 47102406 -155225941 + AT_rich Low_complexity Low_complexity 1 36 0 508 260 26 13 chr4 47103210 47103364 -155224983 - MLT2E LTR ERVL -1 627 472 848 334 95 53 chr4 47103378 47103926 -155224421 - MLT2F LTR ERVL -92 571 1 29 84 0 0 chr4 47104090 47104161 -155224186 + AT_rich Low_complexity Low_complexity 1 71 0 262 351 30 8 chr4 47104314 47104445 -155223902 + L2 LINE L2 3137 3270 -2 2173 110 0 13 chr4 47105397 47105698 -155222649 + AluSx SINE Alu 1 297 -15 189 0 0 0 chr4 47106424 47106445 -155221902 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2014 122 0 0 chr4 47106726 47107005 -155221342 - AluSx SINE Alu -33 279 1 385 318 83 50 chr4 47107005 47107307 -155221040 + L1MDa LINE L1 1283 1594 -4946 2451 60 0 16 chr4 47107328 47107642 -155220705 - AluY SINE Alu -2 309 1 566 157 25 0 chr4 47108280 47108439 -155219908 + (TA)n Simple_repeat Simple_repeat 2 164 0 368 224 24 0 chr4 47108450 47108620 -155219727 + (TA)n Simple_repeat Simple_repeat 1 174 0 351 165 22 55 chr4 47108622 47108989 -155219358 + (TATATG)n Simple_repeat Simple_repeat 1 354 0 567 117 53 0 chr4 47109030 47109201 -155219146 + (TA)n Simple_repeat Simple_repeat 1 180 0 26 64 0 0 chr4 47109212 47109259 -155219088 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr4 47110121 47110142 -155218205 + AT_rich Low_complexity Low_complexity 1 21 0 222 37 0 0 chr4 47110647 47110674 -155217673 + (CA)n Simple_repeat Simple_repeat 1 27 0 893 190 42 19 chr4 47112764 47112980 -155215367 + L1MA4 LINE L1 6071 6291 -9 1184 302 84 56 chr4 47113549 47114364 -155213983 - L2 LINE L2 0 3313 2466 2243 167 18 41 chr4 47114364 47114800 -155213547 - MSTB LTR MaLR 0 426 1 1184 302 84 56 chr4 47114800 47114894 -155213453 - L2 LINE L2 -847 2466 2376 536 324 34 5 chr4 47115644 47115851 -155212496 - MIR SINE MIR -3 259 47 335 340 80 6 chr4 47115893 47116055 -155212292 - MIR SINE MIR -87 175 2 210 204 23 0 chr4 47116215 47116259 -155212088 + MIR SINE MIR 218 262 0 207 88 0 0 chr4 47116891 47116925 -155211422 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 360 64 0 0 chr4 47117388 47117435 -155210912 + (CA)n Simple_repeat Simple_repeat 2 48 0 281 273 67 47 chr4 47118453 47118603 -155209744 - L2 LINE L2 -55 3258 3106 1877 245 89 20 chr4 47119404 47119705 -155208642 + MER21B LTR ERV1 12 291 -572 189 0 0 0 chr4 47119705 47119726 -155208621 + (CCA)n Simple_repeat Simple_repeat 1 21 0 1877 245 89 20 chr4 47119726 47120092 -155208255 + MER21B LTR ERV1 291 794 -69 468 331 24 0 chr4 47120409 47120578 -155207769 - MER5B DNA MER1_type 0 178 6 7438 43 0 0 chr4 47120968 47122262 -155206085 - L1PA5 LINE L1 0 6154 4861 11827 146 11 12 chr4 47122262 47126376 -155201971 + L1MA3 LINE L1 2799 5449 -743 7351 37 1 2 chr4 47126369 47127316 -155201031 + L1PA4 LINE L1 5184 6130 -25 * 212 57 0 29 chr4 47127316 47127351 -155200996 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 4950 144 14 14 chr4 47127351 47128216 -155200131 + L1MA3 LINE L1 5441 6305 0 7351 37 1 2 chr4 47128216 47128237 -155200110 + L1PA4 LINE L1 6128 6152 -3 23 0 0 0 chr4 47129022 47129045 -155199302 + AT_rich Low_complexity Low_complexity 1 23 0 228 348 34 49 chr4 47129570 47129774 -155198573 + L1MC/D LINE L1 5396 5596 -2212 1036 158 35 10 chr4 47129916 47130118 -155198229 - L1MA3 LINE L1 -92 6213 6007 2096 144 23 9 chr4 47130222 47130568 -155197779 - THE1-int LTR MaLR -228 1352 1002 27 29 0 0 chr4 47130755 47130789 -155197558 + AT_rich Low_complexity Low_complexity 1 34 0 585 300 87 9 chr4 47131094 47131324 -155197023 + MIR SINE MIR 12 259 -3 1183 8 0 0 chr4 47131324 47131458 -155196889 + L1HS LINE L1 6020 6153 -2 26 0 0 0 chr4 47131458 47131484 -155196863 + AT_rich Low_complexity Low_complexity 1 26 0 208 231 31 31 chr4 47132183 47132248 -155196099 + CT-rich Low_complexity Low_complexity 4 68 0 26 30 0 0 chr4 47134552 47134585 -155193762 + AT_rich Low_complexity Low_complexity 1 33 0 236 239 142 68 chr4 47134726 47134902 -155193445 - MER5A DNA MER1_type 0 189 1 1627 126 45 29 chr4 47134931 47135247 -155193100 - THE1B LTR MaLR 0 355 2 410 289 51 26 chr4 47135286 47135442 -155192905 - MER5B DNA MER1_type -16 162 3 237 159 0 0 chr4 47136630 47136674 -155191673 + CT-rich Low_complexity Low_complexity 3 46 0 21 0 0 0 chr4 47137002 47137023 -155191324 + AT_rich Low_complexity Low_complexity 1 21 0 200 375 92 0 chr4 47137348 47137468 -155190879 - L2 LINE L2 -21 3251 3121 244 214 0 18 chr4 47137475 47137531 -155190816 + L2 LINE L2 3153 3207 -65 22 70 0 0 chr4 47138267 47138310 -155190037 + AT_rich Low_complexity Low_complexity 1 43 0 184 114 0 29 chr4 47138653 47138688 -155189659 - L2 LINE L2 -567 2747 2714 302 308 0 0 chr4 47139001 47139066 -155189281 + MER81 DNA DNA 6 70 -44 1208 267 76 60 chr4 47139300 47139530 -155188817 - MER90 LTR ERV1 0 575 350 940 256 16 72 chr4 47139530 47139917 -155188430 + MLT1A1 LTR MaLR 1 365 0 1208 267 76 60 chr4 47139917 47140252 -155188095 - MER90 LTR ERV1 -225 350 1 300 368 0 0 chr4 47140662 47140776 -155187571 - L2 LINE L2 -1983 1331 1218 384 291 95 34 chr4 47140964 47141143 -155187204 + MIR SINE MIR 23 212 -50 421 291 7 40 chr4 47141229 47141377 -155186970 + MER77 LTR ERV1 54 196 -409 * 638 258 46 91 chr4 47141351 47141812 -155186535 + MER77 LTR ERV1 98 554 -51 407 378 17 52 chr4 47142069 47142416 -155185931 + L2 LINE L2 2631 2965 -349 239 222 69 0 chr4 47142504 47142576 -155185771 + (TGAA)n Simple_repeat Simple_repeat 1 77 0 26 74 0 0 chr4 47143221 47143275 -155185072 + AT_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr4 47143600 47143629 -155184718 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 47143659 47143688 -155184659 + AT_rich Low_complexity Low_complexity 1 29 0 3098 146 10 2 chr4 47143956 47144469 -155183878 - L1PA15 LINE L1 -1 6164 5648 1582 221 3 3 chr4 47144476 47144834 -155183513 - L1PA13 LINE L1 -1730 5067 4710 1149 172 50 23 chr4 47144982 47145243 -155183104 + THE1C LTR MaLR 108 375 0 2963 191 3 14 chr4 47145244 47145820 -155182527 + THE1C-int LTR MaLR 2 571 -1080 4059 157 10 16 chr4 47145829 47146512 -155181835 + THE1C-int LTR MaLR 895 1573 -7 1569 174 54 64 chr4 47146512 47146885 -155181462 + THE1C LTR MaLR 7 375 0 8450 249 43 17 chr4 47146885 47148833 -155179514 - L1PA13 LINE L1 -2083 4714 2819 207 0 0 0 chr4 47148833 47148856 -155179491 + (TG)n Simple_repeat Simple_repeat 1 23 0 8450 249 43 17 chr4 47148856 47148870 -155179477 - L1PA13 LINE L1 -3978 2819 2807 1997 130 10 7 chr4 47148870 47149169 -155179178 - AluSx SINE Alu -10 302 3 8450 249 43 17 chr4 47149169 47150509 -155177838 - L1PA13 LINE L1 -3990 2807 1283 440 283 119 82 chr4 47150841 47151195 -155177152 - L2 LINE L2 -4 3309 2943 545 291 108 18 chr4 47151407 47151630 -155176717 + MIR SINE MIR 20 262 0 210 158 0 0 chr4 47151657 47151695 -155176652 + (TTA)n Simple_repeat Simple_repeat 3 40 0 18080 36 2 0 chr4 47151736 47154708 -155173639 + L1PA3 LINE L1 3176 6152 -3 665 241 6 19 chr4 47155004 47155166 -155173181 - MER34 LTR ERV1 -372 170 11 2354 89 0 19 chr4 47155809 47156123 -155172224 + AluSg SINE Alu 1 308 -2 356 261 9 118 chr4 47156585 47156796 -155171551 - MIR SINE MIR -7 255 68 1997 133 14 0 chr4 47157013 47157306 -155171041 - AluSx SINE Alu -12 300 4 22 56 0 0 chr4 47157770 47157806 -155170541 + AT_rich Low_complexity Low_complexity 1 36 0 377 248 25 8 chr4 47158195 47158316 -155170031 - L1ME3A LINE L1 -316 5854 5732 285 275 18 9 chr4 47158357 47158466 -155169881 - L1ME3A LINE L1 -1559 4587 4478 214 224 41 0 chr4 47158891 47158940 -155169407 + GA-rich Low_complexity Low_complexity 1 51 0 281 374 98 6 chr4 47160138 47160312 -155168035 - MIR SINE MIR -14 248 59 728 231 33 125 chr4 47160344 47160728 -155167619 - MLT1A1 LTR MaLR -16 489 1 6038 237 87 31 chr4 47160734 47162369 -155165978 - MLT1A1-int LTR MaLR -7 1728 2 712 256 133 50 chr4 47162370 47162753 -155165594 - MSTC LTR MaLR -13 415 1 2162 127 0 0 chr4 47163181 47163489 -155164858 - AluSx SINE Alu -2 310 3 6127 217 68 49 chr4 47163895 47166187 -155162160 + L1MB3 LINE L1 3038 5410 -773 2152 104 3 0 chr4 47166187 47166474 -155161873 + AluSp SINE Alu 1 288 -25 6127 217 68 49 chr4 47166474 47167203 -155161144 + L1MB3 LINE L1 5410 6124 -59 877 152 18 6 chr4 47167308 47167473 -155160874 + L1MB3 LINE L1 6014 6180 -3 23 0 0 0 chr4 47168251 47168274 -155160073 + AT_rich Low_complexity Low_complexity 1 23 0 1744 164 0 35 chr4 47168282 47168593 -155159754 - AluSx SINE Alu -8 304 5 580 124 0 0 chr4 47168656 47168745 -155159602 + AluJ/FRAM SINE Alu 221 309 -3 21 57 0 0 chr4 47169103 47169138 -155159209 + AT_rich Low_complexity Low_complexity 1 35 0 1869 144 3 3 chr4 47170413 47170704 -155157643 + AluSx SINE Alu 3 293 -19 1203 226 155 49 chr4 47171569 47172059 -155156288 + MLT1F LTR MaLR 1 542 0 807 259 57 0 chr4 47172206 47172418 -155155929 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chr4 47172475 47172496 -155155851 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 47172688 47172709 -155155638 + AT_rich Low_complexity Low_complexity 1 21 0 671 189 71 92 chr4 47172963 47173201 -155155146 - MER110A LTR ERV1 -2 466 234 276 188 81 7 chr4 47173309 47173458 -155154889 + (TA)n Simple_repeat Simple_repeat 1 160 0 257 50 99 30 chr4 47173487 47173588 -155154759 + (TA)n Simple_repeat Simple_repeat 2 109 0 244 174 81 0 chr4 47173633 47173719 -155154628 + (TA)n Simple_repeat Simple_repeat 2 94 0 372 191 68 0 chr4 47173776 47173923 -155154424 + (TA)n Simple_repeat Simple_repeat 2 158 0 255 200 0 0 chr4 47173978 47174023 -155154324 + MER69 DNA AcHobo 12 56 -2470 293 250 22 43 chr4 47174029 47174121 -155154226 + LTR33 LTR ERVL 431 520 -1 28 0 0 0 chr4 47175360 47175388 -155152959 + AT_rich Low_complexity Low_complexity 1 28 0 257 150 0 0 chr4 47175585 47175625 -155152722 - MSTC LTR MaLR -387 41 2 942 278 31 0 chr4 47175642 47175869 -155152478 + L1MD2 LINE L1 33 266 -6143 295 203 29 14 chr4 47175866 47175935 -155152412 + L1MD2 LINE L1 1244 1313 -5096 * 1641 261 50 3 chr4 47175996 47176376 -155151971 + MLT1D LTR MaLR 1 398 -107 1996 254 31 44 chr4 47176485 47177139 -155151208 + MLT1D-int LTR MaLR 1 645 -726 1620 273 39 84 chr4 47177206 47177500 -155150847 + MLT1D-int LTR MaLR 664 970 -401 2395 102 0 0 chr4 47177500 47177813 -155150534 + AluSp SINE Alu 1 313 0 1620 273 39 84 chr4 47177813 47178259 -155150088 + MLT1D-int LTR MaLR 970 1371 0 1101 221 55 17 chr4 47178266 47178704 -155149643 + MLT1D LTR MaLR 12 500 -5 1145 176 96 35 chr4 47178714 47179026 -155149321 + L1MD2 LINE L1 1320 1650 -4756 976 254 101 63 chr4 47179060 47179855 -155148492 + L1MD2 LINE L1 1777 2643 -3893 799 214 23 23 chr4 47179853 47180068 -155148279 + L1MD2 LINE L1 5810 6024 -595 * 1630 252 40 17 chr4 47180073 47180545 -155147802 + L1MD2 LINE L1 6133 6615 -4 407 262 151 0 chr4 47180563 47180735 -155147612 - L1M4 LINE L1 -3218 2928 2731 2384 66 20 0 chr4 47180741 47181043 -155147304 - AluY SINE Alu -3 308 1 521 194 47 76 chr4 47181990 47182201 -155146146 - L1MC5 LINE L1 -35 7926 7722 31 44 0 0 chr4 47182246 47182291 -155146056 + AT_rich Low_complexity Low_complexity 1 45 0 235 260 208 0 chr4 47182667 47182744 -155145603 - MIR SINE MIR -120 142 50 23 0 0 0 chr4 47184840 47184863 -155143484 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr4 47185098 47185127 -155143220 + AT_rich Low_complexity Low_complexity 1 29 0 231 340 67 20 chr4 47185433 47185583 -155142764 - L3 LINE CR1 -200 1377 1221 210 333 62 0 chr4 47186596 47186677 -155141670 + L2 LINE L2 3148 3233 -39 2047 130 13 0 chr4 47187977 47188277 -155140070 - AluSx SINE Alu -8 304 1 13803 187 67 21 chr4 47188500 47191297 -155137050 + L1M1 LINE L1 22 2946 -4619 334 58 58 0 chr4 47191299 47191351 -155136996 + L1M1 LINE L1 2892 2946 -4619 324 41 61 0 chr4 47191353 47191402 -155136945 + L1M1 LINE L1 2892 2943 -4622 374 53 53 0 chr4 47191402 47191459 -155136888 + L1M1 LINE L1 2887 2946 -4619 14550 176 19 33 chr4 47191462 47192996 -155135351 + L1MA1 LINE L1 1643 3196 -3386 2015 162 115 5 chr4 47192996 47193378 -155134969 - MSTA LTR MaLR 0 428 5 14550 176 19 33 chr4 47193378 47196803 -155131544 + L1MA1 LINE L1 3196 6582 0 23 0 0 0 chr4 47196877 47196900 -155131447 + AT_rich Low_complexity Low_complexity 1 23 0 254 345 42 14 chr4 47198194 47198336 -155130011 + MIR SINE MIR 7 152 -110 415 322 102 21 chr4 47198484 47198720 -155129627 - MIR SINE MIR 0 262 8 340 221 26 0 chr4 47199265 47199342 -155129005 + MLT1G1 LTR MaLR 1 79 -516 542 350 58 63 chr4 47199909 47200746 -155127601 - L2 LINE L2 -7 3265 2438 441 365 97 32 chr4 47201074 47201509 -155126838 - L3 LINE CR1 -21 1556 1094 210 71 0 0 chr4 47201512 47201540 -155126807 + (TA)n Simple_repeat Simple_repeat 2 29 0 436 324 83 17 chr4 47201645 47201886 -155126461 + MIR SINE MIR 6 262 0 254 318 23 78 chr4 47201916 47202045 -155126302 - L2 LINE L2 0 3272 3151 1838 130 61 66 chr4 47202126 47202209 -155126138 - THE1C LTR MaLR 0 375 293 2274 117 0 0 chr4 47202209 47202516 -155125831 + AluSc SINE Alu 1 307 -2 1838 130 61 66 chr4 47202516 47202809 -155125538 - THE1C LTR MaLR -82 293 1 1050 121 17 0 chr4 47203049 47203222 -155125125 - L1MA4A LINE L1 -9 6294 6119 334 318 78 51 chr4 47203889 47204106 -155124241 - L2 LINE L2 -258 3055 2833 4196 103 2 13 chr4 47204281 47204893 -155123454 + L1PA13 LINE L1 5554 6158 -5 2057 99 51 0 chr4 47205252 47205544 -155122803 - AluSp SINE Alu -4 309 3 209 333 0 0 chr4 47205676 47205745 -155122602 - MIR SINE MIR -12 250 182 * 252 372 33 8 chr4 47205744 47205865 -155122482 + L2 LINE L2 3188 3311 -2 321 319 86 37 chr4 47205867 47206030 -155122317 - MIR SINE MIR -75 187 17 21 0 0 0 chr4 47206056 47206077 -155122270 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr4 47206298 47206322 -155122025 + (TTG)n Simple_repeat Simple_repeat 2 25 0 414 0 0 0 chr4 47206670 47206716 -155121631 + (CA)n Simple_repeat Simple_repeat 2 47 0 1748 242 73 42 chr4 47207905 47208508 -155119839 + MLT1E3 LTR MaLR 3 624 0 267 92 46 0 chr4 47208544 47208609 -155119738 + (TA)n Simple_repeat Simple_repeat 1 68 0 6621 72 0 0 chr4 47208609 47209472 -155118875 - L1PA8 LINE L1 -17 6155 5293 203 171 0 0 chr4 47209526 47209567 -155118780 + T-rich Low_complexity Low_complexity 1 41 0 7911 17 0 0 chr4 47209573 47211049 -155117298 - L1HS LINE L1 0 6155 4680 7605 118 8 3 chr4 47211039 47212212 -155116135 - L1PA8 LINE L1 -830 5316 4138 * 475 343 36 36 chr4 47212702 47213005 -155115342 - MLT1J1 LTR MaLR -138 308 6 340 304 27 0 chr4 47213203 47213315 -155115032 + MIR SINE MIR 142 256 -6 1936 189 58 19 chr4 47213418 47213830 -155114517 - MSTA LTR MaLR 0 428 1 6107 230 31 40 chr4 47213830 47215135 -155113212 - MLT1C-int LTR MaLR 0 1651 447 1450 234 3 7 chr4 47215135 47215438 -155112909 + AluJb SINE Alu 1 302 0 6107 230 31 40 chr4 47215438 47215881 -155112466 - MLT1C-int LTR MaLR -1204 447 2 1859 169 50 83 chr4 47215883 47216326 -155112021 - MSTA LTR MaLR 0 428 1 2183 143 30 16 chr4 47217483 47217853 -155110494 - THE1C LTR MaLR 0 375 1 1171 313 93 19 chr4 47218808 47218902 -155109445 + L2 LINE L2 2376 2462 -852 2270 167 18 41 chr4 47218902 47219338 -155109009 + MSTB LTR MaLR 1 426 0 1171 313 93 19 chr4 47219338 47219779 -155108568 + L2 LINE L2 2462 2951 -363 51 58 0 0 chr4 47220534 47220620 -155107727 + AT_rich Low_complexity Low_complexity 1 86 0 1990 152 32 6 chr4 47220989 47221337 -155107010 + THE1B LTR MaLR 1 357 -7 23 0 0 0 chr4 47221847 47221870 -155106477 + AT_rich Low_complexity Low_complexity 1 23 0 2220 120 0 13 chr4 47222329 47222645 -155105702 - AluSq SINE Alu -1 312 1 6191 82 7 3 chr4 47222652 47223506 -155104841 - L1PA7 LINE L1 -5 6149 5293 7911 19 0 0 chr4 47223604 47225080 -155103267 - L1HS LINE L1 0 6155 4680 5966 122 8 2 chr4 47225070 47225998 -155102349 - L1PA7 LINE L1 -830 5316 4384 * 980 240 106 34 chr4 47226101 47226488 -155101859 - MLT1C LTR MaLR -52 415 1 315 329 0 0 chr4 47226488 47226564 -155101783 - MIR SINE MIR -173 89 14 220 222 37 0 chr4 47226613 47226667 -155101680 + MIR SINE MIR 193 248 -14 4091 181 50 15 chr4 47226852 47227712 -155100635 + L1MC1 LINE L1 5426 6315 -18 544 141 0 11 chr4 47228572 47228664 -155099683 + MER4A LTR ERV1 2 92 -572 1668 121 16 77 chr4 47228665 47229036 -155099311 + MER4A LTR ERV1 256 662 -2 439 296 127 33 chr4 47229075 47229288 -155099059 - MIR SINE MIR 0 262 30 1880 129 0 45 chr4 47229710 47230021 -155098326 + AluSc SINE Alu 3 299 -10 252 0 0 0 chr4 47230252 47230280 -155098067 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3498 197 28 34 chr4 47230666 47231378 -155096969 + MER50 LTR ERV1 1 708 -26 1995 152 7 3 chr4 47231778 47232080 -155096267 + AluSx SINE Alu 1 303 -9 245 361 33 0 chr4 47232284 47232406 -155095941 - MIR SINE MIR -36 226 101 1244 107 6 0 chr4 47232419 47232596 -155095751 + MER4E LTR ERV1 589 766 0 2916 180 18 76 chr4 47232903 47233293 -155095054 + LTR51 LTR ERV1 1 333 -338 1890 159 3 10 chr4 47233293 47233595 -155094752 - AluSx SINE Alu -12 300 1 2916 180 18 76 chr4 47233595 47233914 -155094433 + LTR51 LTR ERV1 333 669 -2 2300 144 41 3 chr4 47235235 47235623 -155092724 - MER57A LTR ERV1 0 403 1 325 364 146 5 chr4 47235880 47236100 -155092247 - MIR SINE MIR -10 252 2 437 205 26 86 chr4 47236189 47236306 -155092041 - FLAM_C SINE Alu -20 123 14 200 362 0 0 chr4 47236321 47236379 -155091968 - L2 LINE L2 -15 3257 3200 21 0 0 0 chr4 47237555 47237576 -155090771 + AT_rich Low_complexity Low_complexity 1 21 0 3101 184 34 5 chr4 47237576 47238191 -155090156 - L1MC1 LINE L1 -5 6328 5696 2239 145 42 31 chr4 47238191 47238555 -155089792 + L1M1 LINE L1 5115 5488 -815 1775 131 0 0 chr4 47238555 47238799 -155089548 + AluSx SINE Alu 46 289 -23 2239 145 42 31 chr4 47238799 47239028 -155089319 + L1M1 LINE L1 5488 5713 -590 4541 260 26 8 chr4 47239033 47240600 -155087747 - L1MCa LINE L1 -2464 3962 2366 4230 195 82 42 chr4 47240606 47241654 -155086693 - L1MCa LINE L1 -5332 1094 5 198 353 70 39 chr4 47241655 47241741 -155086606 - L2 LINE L2 -616 2698 2603 2249 142 17 3 chr4 47241741 47242100 -155086247 - THE1B LTR MaLR 0 364 1 198 353 70 39 chr4 47242100 47242169 -155086178 - L2 LINE L2 -711 2603 2538 51 58 0 0 chr4 47242469 47242555 -155085792 + AT_rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr4 47243845 47243866 -155084481 + AT_rich Low_complexity Low_complexity 1 21 0 227 114 23 0 chr4 47244445 47244489 -155083858 + (CA)n Simple_repeat Simple_repeat 2 46 0 180 0 0 0 chr4 47245483 47245503 -155082844 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 481 299 35 17 chr4 47245686 47245860 -155082487 + MIR SINE MIR 12 188 -74 4818 100 54 66 chr4 47245895 47247351 -155080996 + pTR5 LTR ERV1 742 2606 0 2097 143 22 22 chr4 47247756 47248119 -155080228 - THE1B LTR MaLR 0 364 2 266 296 30 53 chr4 47248417 47248549 -155079798 - MIR SINE MIR -46 216 88 2037 214 89 39 chr4 47248874 47249393 -155078954 + MER74A LTR ERVL 3 547 -11 345 24 0 0 chr4 47249395 47249437 -155078910 + (TAA)n Simple_repeat Simple_repeat 1 42 0 2327 106 0 0 chr4 47250329 47250641 -155077706 + AluSx SINE Alu 1 312 0 1521 184 9 43 chr4 47250984 47251310 -155077037 + LTR62 LTR ERVK 1 315 -404 2321 176 7 18 chr4 47251866 47252304 -155076043 - Tigger2a DNA MER2_type 0 434 2 655 344 90 19 chr4 47252812 47253178 -155075169 - MLT1H LTR MaLR -16 533 142 1868 196 14 6 chr4 47253390 47253752 -155074595 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chr4 47255975 47255998 -155072349 + AT_rich Low_complexity Low_complexity 1 23 0 2226 121 0 9 chr4 47256457 47256772 -155071575 - AluSq SINE Alu -1 312 1 19205 68 5 4 chr4 47256779 47260146 -155068201 - L1PA6 LINE L1 -5 6149 2776 234 0 0 0 chr4 47260203 47260229 -155068118 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2052 121 0 0 chr4 47260230 47260510 -155067837 - AluSx SINE Alu -32 280 1 1190 201 35 129 chr4 47260787 47261181 -155067166 + MLT1A1 LTR MaLR 9 365 0 185 298 79 44 chr4 47261629 47261743 -155066604 - L2 LINE L2 -12 3301 3184 1239 213 0 8 chr4 47263269 47263518 -155064829 + 7SLRNA srpRNA srpRNA 70 316 -4 674 240 162 0 chr4 47264620 47264799 -155063548 + MER3 DNA MER1_type 2 209 0 252 122 0 0 chr4 47265797 47265838 -155062509 + (CA)n Simple_repeat Simple_repeat 2 42 0 628 289 151 16 chr4 47266418 47266722 -155061625 + L2 LINE L2 2359 2703 -611 451 297 83 59 chr4 47266722 47267237 -155061110 - L1M4b LINE L1 -4894 2053 1374 2236 87 0 3 chr4 47267247 47267534 -155060813 - AluSx SINE Alu -21 291 6 565 319 70 12 chr4 47268010 47268251 -155060096 + L2 LINE L2 2696 2950 -364 861 253 7 90 chr4 47268327 47268616 -155059731 - MLT2F LTR ERVL -2 661 397 256 300 29 43 chr4 47268860 47269000 -155059347 - MLT2F LTR ERVL -516 147 10 266 211 14 14 chr4 47269008 47269079 -155059268 - HERVL-F LTR ERVL 0 5654 5584 458 202 20 10 chr4 47269079 47269178 -155059169 - L1MA6 LINE L1 -313 5987 5888 1385 307 40 6 chr4 47269180 47269652 -155058695 - HERVL-F LTR ERVL -532 5232 4745 4143 159 15 15 chr4 47270102 47270975 -155057372 - L1M1 LINE L1 -743 6822 5989 10678 173 24 43 chr4 47270976 47274261 -155054086 - L1M1 LINE L1 -2669 4896 1670 540 364 57 4 chr4 47275240 47275468 -155052879 - MIR SINE MIR 0 262 23 2865 290 76 43 chr4 47275535 47277450 -155050897 + L1MEc LINE L1 35 2012 -4384 40006 81 8 6 chr4 47277593 47283348 -155044999 - L1P2 LINE L1 -380 5774 11 305 238 12 12 chr4 47283356 47283436 -155044911 + MER39 LTR ERV1 628 707 0 23 0 0 0 chr4 47283557 47283580 -155044767 + AT_rich Low_complexity Low_complexity 1 23 0 385 347 37 11 chr4 47284319 47284509 -155043838 - L3 LINE CR1 -115 1462 1268 557 313 91 0 chr4 47285236 47285444 -155042903 - MIR SINE MIR -21 241 15 204 301 233 0 chr4 47285444 47285547 -155042800 - MIR SINE MIR -86 176 50 1572 187 111 48 chr4 47287013 47287450 -155040897 + MER31A LTR ERV1 1 539 -4 27 62 0 0 chr4 47288104 47288152 -155040195 + AT_rich Low_complexity Low_complexity 1 48 0 1394 191 58 0 chr4 47288307 47288584 -155039763 + MER82 DNA MER2_type 1 293 -360 3810 133 54 83 chr4 47288590 47289384 -155038963 + LTR1 LTR ERV1 1 771 -14 16757 159 36 20 chr4 47289402 47292380 -155035967 + HUERS-P2 LTR ERV1 1 3088 0 3939 143 48 63 chr4 47292393 47293184 -155035163 + LTR1 LTR ERV1 7 785 0 1222 239 51 27 chr4 47293193 47293528 -155034819 + MER82 DNA MER2_type 305 647 -6 1745 136 80 0 chr4 47294765 47295052 -155033295 + AluY SINE Alu 2 311 0 503 118 12 0 chr4 47295054 47295139 -155033208 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 210 143 0 0 chr4 47295247 47295282 -155033065 + (TA)n Simple_repeat Simple_repeat 2 36 0 423 234 48 73 chr4 47295850 47296205 -155032142 + L1MEc LINE L1 2086 2431 -3965 * 4690 230 41 66 chr4 47296196 47296724 -155031623 + L1MEc LINE L1 3281 3821 -2394 1908 147 3 0 chr4 47296724 47297016 -155031331 + AluSx SINE Alu 1 293 -19 4690 230 41 66 chr4 47297016 47297993 -155030354 + L1MEc LINE L1 3821 4736 -1479 3331 39 2 2 chr4 47297993 47298390 -155029957 + L1PA3 LINE L1 5746 6152 -3 4690 230 41 66 chr4 47298390 47298669 -155029678 + L1MEc LINE L1 4736 5021 -1194 835 74 67 0 chr4 47298711 47298860 -155029487 + GA-rich Low_complexity Low_complexity 5 163 0 26 64 0 0 chr4 47299107 47299154 -155029193 + AT_rich Low_complexity Low_complexity 1 47 0 799 278 95 14 chr4 47300581 47300865 -155027482 + MLT1I LTR MaLR 85 391 -18 1275 156 10 51 chr4 47300867 47301156 -155027191 + MER1B DNA MER1_type 1 339 0 30 27 0 0 chr4 47301189 47301226 -155027121 + AT_rich Low_complexity Low_complexity 1 37 0 1081 147 9 51 chr4 47301480 47301855 -155026492 - MER4B LTR ERV1 -1 860 264 2322 64 0 0 chr4 47301855 47302172 -155026175 - AluY SINE Alu 0 317 1 675 111 0 10 chr4 47302186 47302285 -155026062 - MER4A LTR ERV1 -566 98 1 1418 269 69 22 chr4 47302320 47302825 -155025522 - L1MC4a LINE L1 -1864 5944 5416 5464 209 28 5 chr4 47304441 47305912 -155022435 - L1MC1 LINE L1 -1 6726 5224 2291 96 13 0 chr4 47305973 47306276 -155022071 - AluSg SINE Alu -3 307 1 295 219 94 49 chr4 47306928 47307073 -155021274 - L1MC1 LINE L1 -3961 2579 2449 202 341 114 42 chr4 47307183 47307350 -155020997 + L2 LINE L2 2552 2730 -584 201 39 0 0 chr4 47308261 47308287 -155020060 + (CATA)n Simple_repeat Simple_repeat 3 28 0 30 0 0 0 chr4 47308502 47308532 -155019815 + AT_rich Low_complexity Low_complexity 1 30 0 226 314 40 65 chr4 47308722 47308846 -155019501 + MIR SINE MIR 20 140 -122 204 343 152 0 chr4 47308916 47309015 -155019332 + L2 LINE L2 3200 3313 0 635 208 26 26 chr4 47309110 47309264 -155019083 - MER39 LTR ERV1 0 707 554 296 170 0 0 chr4 47309269 47309316 -155019031 + MER34-int LTR ERV1 6119 6165 -166 244 196 0 0 chr4 47309389 47309435 -155018912 + MER34 LTR ERV1 1 46 -496 * 976 253 107 30 chr4 47309430 47309794 -155018553 + MER39 LTR ERV1 102 620 -87 1822 101 0 0 chr4 47309968 47310206 -155018141 + AluSx SINE Alu 1 238 -74 1302 216 97 40 chr4 47310216 47310238 -155018109 + MLT2B1 LTR ERVL 69 88 -432 1864 127 82 23 chr4 47310238 47310592 -155017755 - THE1C LTR MaLR 0 375 1 1302 216 97 40 chr4 47310592 47310898 -155017449 + MLT2B1 LTR ERVL 88 416 -104 5357 146 15 27 chr4 47311098 47312031 -155016316 - MER49 LTR ERV1 -1 922 1 258 256 32 80 chr4 47312142 47312267 -155016080 - MLT1I LTR MaLR -262 147 37 1507 319 114 28 chr4 47312882 47313989 -155014358 - L2 LINE L2 0 3313 2046 27 0 0 0 chr4 47314879 47314906 -155013441 + AT_rich Low_complexity Low_complexity 1 27 0 849 317 54 46 chr4 47315793 47316417 -155011930 - L2 LINE L2 -1 3312 2682 555 123 0 0 chr4 47316417 47316498 -155011849 + MER67A LTR ERV1 1 81 -462 1631 205 35 79 chr4 47316576 47316849 -155011498 + MER67A LTR ERV1 82 326 -217 1980 113 7 3 chr4 47316849 47317132 -155011215 + AluY SINE Alu 1 287 -24 268 42 0 42 chr4 47317132 47317180 -155011167 + (TTAA)n Simple_repeat Simple_repeat 1 46 0 1631 205 35 79 chr4 47317189 47317398 -155010949 + MER67A LTR ERV1 326 543 0 266 362 117 0 chr4 47317411 47317574 -155010773 - L2 LINE L2 -640 2674 2493 2148 126 0 0 chr4 47317683 47317984 -155010363 - AluSc SINE Alu -8 301 1 1742 132 24 17 chr4 47318025 47318314 -155010033 - AluSq SINE Alu -22 291 1 896 224 12 29 chr4 47318334 47318580 -155009767 - L1ME2 LINE L1 -118 6046 5805 1292 266 16 30 chr4 47318580 47318948 -155009399 + MLT1A2 LTR MaLR 1 363 -11 1849 243 66 10 chr4 47318953 47319502 -155008845 - L1ME2 LINE L1 -353 5811 5237 1885 156 0 29 chr4 47319513 47319860 -155008487 + MER1B DNA MER1_type 1 337 0 995 284 46 5 chr4 47319879 47320249 -155008098 - L1ME2 LINE L1 -1053 5093 4709 660 324 37 4 chr4 47322032 47322273 -155006074 + MIR SINE MIR 1 249 -13 1227 168 9 5 chr4 47323121 47323335 -155005012 + L1PB3 LINE L1 5939 6153 -1 204 234 156 0 chr4 47323355 47323432 -155004915 - MIR SINE MIR -50 212 124 2399 63 7 3 chr4 47323489 47323791 -155004556 + AluY SINE Alu 1 303 -8 344 279 133 42 chr4 47324019 47324184 -155004163 + MIR SINE MIR 34 213 -49 580 291 134 26 chr4 47325889 47326258 -155002089 + L2 LINE L2 2594 3006 -307 1353 183 107 69 chr4 47326522 47326944 -155001403 + LTR21B LTR ERV1 1 438 0 614 322 198 35 chr4 47327262 47328150 -155000197 + L2 LINE L2 548 1580 -1734 363 361 137 6 chr4 47328151 47328464 -154999883 + L2 LINE L2 1917 2270 -1044 201 207 37 0 chr4 47328534 47328616 -154999731 + (TA)n Simple_repeat Simple_repeat 1 85 0 240 349 136 39 chr4 47328624 47328962 -154999385 + L2 LINE L2 2290 2660 -654 302 119 0 0 chr4 47329044 47329086 -154999261 - MLT1A2 LTR MaLR 0 374 333 222 333 21 21 chr4 47329093 47329186 -154999161 + L2 LINE L2 2967 3059 -254 200 434 0 0 chr4 47329702 47329808 -154998539 - L2 LINE L2 -8 3305 3200 271 341 24 0 chr4 47329928 47330013 -154998334 - L2 LINE L2 -1355 1959 1873 234 288 0 0 chr4 47330557 47330616 -154997731 + MER3 DNA MER1_type 2 60 -149 10507 156 36 11 chr4 47330626 47332542 -154995805 + L1PA12 LINE L1 3310 5273 -873 5411 109 9 42 chr4 47332730 47333476 -154994871 + L1PA12 LINE L1 5317 6086 -82 1916 105 12 0 chr4 47333476 47333733 -154994614 + AluSq SINE Alu 1 260 -53 446 0 19 0 chr4 47333735 47333789 -154994558 + (CA)n Simple_repeat Simple_repeat 2 56 0 5411 109 9 42 chr4 47333789 47333920 -154994427 + L1PA12 LINE L1 6087 6168 0 572 225 31 0 chr4 47333924 47334053 -154994294 + MER3 DNA MER1_type 77 209 0 233 361 109 0 chr4 47334486 47334605 -154993742 - L2 LINE L2 -4 3268 3137 235 235 86 3 chr4 47335577 47335672 -154992675 + MLT1J LTR MaLR 67 140 -310 6189 68 17 1 chr4 47335718 47336540 -154991807 - L1PA8 LINE L1 -13 6159 5325 3947 105 10 0 chr4 47336539 47337129 -154991218 + L1PA8 LINE L1 4704 5299 -847 * 2244 49 56 14 chr4 47337507 47337795 -154990552 + AluY SINE Alu 1 300 -11 469 304 42 57 chr4 47338494 47338777 -154989570 + L1MC4a LINE L1 5586 5864 -1944 21 0 0 0 chr4 47338915 47338936 -154989411 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr4 47339308 47339344 -154989003 + AT_rich Low_complexity Low_complexity 1 36 0 413 248 79 10 chr4 47340180 47340281 -154988066 - MIR SINE MIR -150 112 5 192 381 0 12 chr4 47341027 47341111 -154987236 - L2 LINE L2 -517 2797 2715 250 294 29 0 chr4 47341112 47341180 -154987167 - L2 LINE L2 0 3313 3244 1813 186 44 26 chr4 47341448 47341984 -154986363 + MLT2A2 LTR ERVL 1 544 -10 389 311 57 26 chr4 47342037 47342230 -154986117 - L2 LINE L2 -874 2440 2242 489 77 44 0 chr4 47342445 47342536 -154985811 + (TAGA)n Simple_repeat Simple_repeat 1 95 0 1817 279 81 11 chr4 47342562 47343280 -154985067 - L1ME2 LINE L1 -117 6047 5280 3001 243 43 37 chr4 47343293 47343540 -154984807 + L1MC4a LINE L1 4114 4358 -1788 2315 53 0 3 chr4 47343540 47343849 -154984498 + AluY SINE Alu 1 308 0 3001 243 43 37 chr4 47343849 47344724 -154983623 + L1MC4a LINE L1 4358 5246 -900 445 264 90 14 chr4 47344734 47344878 -154983469 + L2 LINE L2 3159 3313 0 300 309 181 7 chr4 47344981 47345130 -154983217 - MER5A DNA MER1_type -6 183 9 2452 58 0 3 chr4 47345790 47346098 -154982249 - AluY SINE Alu -4 307 1 374 329 193 26 chr4 47346180 47346569 -154981778 - L3 LINE CR1 -156 1421 968 428 344 58 22 chr4 47346852 47347076 -154981271 + MIR SINE MIR 10 241 -21 21 0 0 0 chr4 47347127 47347148 -154981199 + AT_rich Low_complexity Low_complexity 1 21 0 301 305 86 16 chr4 47347434 47347562 -154980785 - MIR SINE MIR -21 241 105 843 209 0 13 chr4 47350307 47350460 -154977887 + FRAM SINE Alu 1 151 -15 189 139 0 0 chr4 47350460 47350503 -154977844 + (TA)n Simple_repeat Simple_repeat 2 44 0 208 268 70 84 chr4 47350716 47350858 -154977489 - L2 LINE L2 -463 2851 2712 23 92 0 0 chr4 47350964 47351029 -154977318 + AT_rich Low_complexity Low_complexity 1 65 0 33 80 0 0 chr4 47351081 47351156 -154977191 + AT_rich Low_complexity Low_complexity 1 75 0 1430 291 60 7 chr4 47351213 47351750 -154976597 + L1MC4a LINE L1 5255 5819 -1989 4576 179 47 23 chr4 47351752 47352427 -154975920 + L1PB4 LINE L1 4757 5415 -741 2133 130 0 0 chr4 47352427 47352727 -154975620 + AluSq SINE Alu 1 300 -13 4576 179 47 23 chr4 47352727 47353417 -154974930 + L1PB4 LINE L1 5415 6153 -3 777 279 86 21 chr4 47353429 47353802 -154974545 + L1MC4a LINE L1 5812 6208 -1600 372 256 70 3 chr4 47354134 47354334 -154974013 + LTR37A LTR ERV1 38 312 -114 1316 199 37 54 chr4 47354343 47354730 -154973617 - MLT2B3 LTR ERVL 0 554 183 1612 203 0 3 chr4 47354800 47355090 -154973257 + AluJb SINE Alu 4 292 -20 1703 264 99 69 chr4 47355153 47356379 -154971968 - L1MC4 LINE L1 -91 7951 6690 240 86 0 0 chr4 47356737 47356772 -154971575 + (TA)n Simple_repeat Simple_repeat 1 35 0 540 159 0 0 chr4 47356897 47356985 -154971362 - L1PA16 LINE L1 -49 6117 6030 24 0 0 0 chr4 47357282 47357306 -154971041 + AT_rich Low_complexity Low_complexity 1 24 0 2403 123 0 0 chr4 47357446 47357812 -154970535 - L1PA16 LINE L1 0 6166 5801 2565 114 11 0 chr4 47357912 47358288 -154970059 - L1PA16 LINE L1 -373 5793 5414 1403 214 19 3 chr4 47358285 47358654 -154969693 + L1PA16 LINE L1 5021 5395 -751 * 271 288 66 61 chr4 47358671 47358869 -154969478 - MLT1H LTR MaLR -240 309 111 2151 187 78 0 chr4 47359006 47359401 -154968946 + MSTB LTR MaLR 1 426 0 593 286 162 72 chr4 47359482 47359987 -154968360 - L2 LINE L2 -98 3215 2659 622 268 82 33 chr4 47360010 47360253 -154968094 - L2 LINE L2 -1411 1903 1649 748 259 97 23 chr4 47360264 47360573 -154967774 + L1MB7 LINE L1 5812 6143 -41 3653 90 39 8 chr4 47361923 47362458 -154965889 - MER41A LTR ERV1 -2 552 1 599 308 106 10 chr4 47363101 47363542 -154964805 + LTR33 LTR ERVL 1 507 -14 2740 81 42 104 chr4 47363595 47364077 -154964270 + MLT2A2 LTR ERVL 1 452 -1 869 252 19 80 chr4 47364552 47364929 -154963418 - LTR37B LTR ERV1 -65 403 50 1878 124 7 11 chr4 47364933 47365208 -154963139 + AluSq SINE Alu 1 274 -39 965 104 35 6 chr4 47365218 47365391 -154962956 + GA-rich Low_complexity Low_complexity 3 180 0 1376 249 50 42 chr4 47366032 47366533 -154961814 + MLT1D LTR MaLR 1 505 0 225 281 135 0 chr4 47366555 47366644 -154961703 + L1MC/D LINE L1 5414 5514 -2294 344 303 84 67 chr4 47366806 47367149 -154961198 + L2 LINE L2 1489 1837 -1477 42 36 0 0 chr4 47367149 47367205 -154961142 + AT_rich Low_complexity Low_complexity 1 56 0 218 190 0 17 chr4 47367349 47367407 -154960940 + (TA)n Simple_repeat Simple_repeat 2 58 0 351 22 0 0 chr4 47367483 47367529 -154960818 - L1PA6 LINE L1 -1 6153 6108 4273 76 9 2 chr4 47367529 47368097 -154960250 + L1P LINE L1 592 1163 -4983 261 301 76 43 chr4 47368107 47368383 -154959964 - L1MC/D LINE L1 -2213 5595 5311 370 309 72 80 chr4 47368620 47369034 -154959313 - L1MC/D LINE L1 -1234 4912 4502 25 31 0 0 chr4 47369681 47369713 -154958634 + AT_rich Low_complexity Low_complexity 1 32 0 552 371 75 36 chr4 47370527 47371185 -154957162 - L2 LINE L2 -410 2904 2222 189 323 48 0 chr4 47371845 47371907 -154956440 - MIR SINE MIR -115 93 29 982 284 45 33 chr4 47371924 47372283 -154956064 + MER69 DNA AcHobo 18 380 -846 432 302 24 30 chr4 47374115 47374284 -154954063 + L2 LINE L2 3144 3311 -2 22 0 0 0 chr4 47374839 47374861 -154953486 + AT_rich Low_complexity Low_complexity 1 22 0 202 200 156 22 chr4 47375093 47375183 -154953164 + MIR SINE MIR 83 184 -78 1022 253 69 31 chr4 47375616 47375976 -154952371 - MLT1A2 LTR MaLR 0 374 1 180 0 0 0 chr4 47376136 47376156 -154952191 + (CA)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr4 47377120 47377149 -154951198 + AT_rich Low_complexity Low_complexity 1 29 0 1035 194 235 0 chr4 47377212 47377536 -154950811 + L1MA4A LINE L1 5881 6280 -23 24 53 0 0 chr4 47378054 47378092 -154950255 + AT_rich Low_complexity Low_complexity 1 38 0 844 281 38 0 chr4 47378358 47378596 -154949751 + MIR SINE MIR 5 251 -11 213 39 0 0 chr4 47378713 47378739 -154949608 + (CAA)n Simple_repeat Simple_repeat 2 27 0 22 80 0 0 chr4 47379681 47379731 -154948616 + AT_rich Low_complexity Low_complexity 1 50 0 255 31 0 0 chr4 47380796 47380828 -154947519 + (CA)n Simple_repeat Simple_repeat 1 32 0 25 31 0 0 chr4 47381126 47381158 -154947189 + AT_rich Low_complexity Low_complexity 1 32 0 292 357 75 18 chr4 47381603 47381830 -154946517 + MIR SINE MIR 11 250 -12 204 163 0 0 chr4 47381832 47381875 -154946472 + (TG)n Simple_repeat Simple_repeat 2 44 0 27 0 0 0 chr4 47382354 47382381 -154945966 + AT_rich Low_complexity Low_complexity 1 27 0 940 141 0 22 chr4 47382603 47382787 -154945560 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 853 168 5 9 chr4 47382787 47383008 -154945339 + GA-rich Low_complexity Low_complexity 1 220 0 2223 115 41 0 chr4 47383022 47383361 -154944986 - L1PA13 LINE L1 -191 5972 5620 1248 125 0 0 chr4 47383361 47383544 -154944803 + L1PA13 LINE L1 5975 6158 -5 1364 197 36 11 chr4 47383556 47383835 -154944512 + AluJb SINE Alu 10 295 -17 600 170 23 23 chr4 47383846 47384017 -154944330 + GA-rich Low_complexity Low_complexity 2 172 0 2034 141 3 0 chr4 47384211 47384515 -154943832 + AluSx SINE Alu 1 305 -7 351 316 51 42 chr4 47384644 47384859 -154943488 - LTR16B LTR ERVL -247 217 1 977 255 14 39 chr4 47385053 47385335 -154943012 - MLT2C1 LTR ERVL -106 291 17 22 35 0 0 chr4 47385706 47385735 -154942612 + AT_rich Low_complexity Low_complexity 1 29 0 2054 118 0 10 chr4 47385756 47386052 -154942295 - AluSc SINE Alu -16 293 1 21 82 0 0 chr4 47386112 47386161 -154942186 + AT_rich Low_complexity Low_complexity 1 49 0 21 57 0 0 chr4 47386269 47386304 -154942043 + AT_rich Low_complexity Low_complexity 1 35 0 437 215 35 35 chr4 47386406 47386550 -154941797 + L1MEc LINE L1 1023 1166 -5230 2023 109 7 10 chr4 47386752 47387055 -154941292 + AluSx SINE Alu 1 302 -10 257 344 0 8 chr4 47387076 47387198 -154941149 + L1MEc LINE L1 1250 1370 -4845 45 45 0 0 chr4 47387201 47387267 -154941080 + AT_rich Low_complexity Low_complexity 1 66 0 1409 270 41 39 chr4 47387301 47388011 -154940336 + L1MEc LINE L1 1565 2275 -4121 726 261 29 10 chr4 47388013 47388220 -154940127 - MER58C DNA MER1_type -2 213 3 338 275 42 26 chr4 47388223 47388416 -154939931 + L1MEc LINE L1 3112 3307 -2908 21 0 0 0 chr4 47388514 47388535 -154939812 + AT_rich Low_complexity Low_complexity 1 21 0 1664 162 75 25 chr4 47389080 47389438 -154938909 + MLT1B LTR MaLR 15 390 0 270 291 128 18 chr4 47389504 47389731 -154938616 + L1M4 LINE L1 2112 2363 -3783 884 304 71 65 chr4 47389800 47390460 -154937887 - PABL_B LTR ERV1 0 667 4 282 302 117 6 chr4 47390707 47390886 -154937461 + HAL1 LINE L1 1704 1902 -605 225 189 0 57 chr4 47391378 47391431 -154936916 + HAL1 LINE L1 2259 2308 -199 637 176 24 0 chr4 47393210 47393335 -154935012 - L1MA9 LINE L1 -341 5950 5823 968 221 53 50 chr4 47393339 47393661 -154934686 + L1MA9 LINE L1 5952 6274 -38 2091 81 3 52 chr4 47393968 47394278 -154934069 + AluY SINE Alu 2 296 -15 4711 156 51 27 chr4 47394700 47395450 -154932897 + L1PB4 LINE L1 5026 5757 -399 327 85 0 0 chr4 47395450 47395497 -154932850 + (CA)n Simple_repeat Simple_repeat 2 48 0 279 0 0 0 chr4 47395496 47395527 -154932820 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 4711 156 51 27 chr4 47395497 47395893 -154932454 + L1PB4 LINE L1 5757 6154 -2 192 219 0 0 chr4 47396186 47396227 -154932120 - L2 LINE L2 -5 3308 3268 21 71 0 0 chr4 47396946 47396988 -154931359 + AT_rich Low_complexity Low_complexity 1 42 0 247 316 26 26 chr4 47398212 47398288 -154930059 + MER91A DNA MER1_type 5 80 -116 421 71 0 0 chr4 47449694 47449750 -154878597 + AluSc SINE Alu 235 290 -19 2136 78 61 0 chr4 47449768 47450061 -154878286 - AluY SINE Alu 0 311 1 3663 82 0 11 chr4 47450729 47451254 -154877093 - L1PA3 LINE L1 -2 6153 5635 250 319 205 12 chr4 47451875 47452041 -154876306 - MIR SINE MIR -36 226 29 339 98 20 0 chr4 47452391 47452442 -154875905 - MER53 DNA DNA -137 52 1 670 187 6 84 chr4 47452624 47452790 -154875557 + MER39 LTR ERV1 1 153 -554 3438 196 18 16 chr4 47452952 47453713 -154874634 - L1MC2 LINE L1 -11 6333 5571 334 169 0 0 chr4 47453840 47453899 -154874448 + MLT1A1 LTR MaLR 10 68 -297 622 256 26 0 chr4 47454002 47454158 -154874189 + MLT1A1 LTR MaLR 204 363 -2 252 258 67 98 chr4 47454174 47454368 -154873979 + L2 LINE L2 3114 3301 -12 1905 136 21 7 chr4 47454368 47454655 -154873692 + AluSg SINE Alu 1 291 -19 1317 253 36 71 chr4 47454710 47455149 -154873198 - LTR40b LTR ERVL -36 426 3 1202 87 12 6 chr4 47456428 47456600 -154871747 + L1PB1 LINE L1 5978 6150 -1 902 165 6 0 chr4 47456909 47457067 -154871280 + L1PA16 LINE L1 5997 6155 -11 369 301 17 0 chr4 47457321 47457422 -154870925 + MIR SINE MIR 45 152 -62 495 302 94 42 chr4 47457486 47457698 -154870649 - MIR SINE MIR -25 237 15 8392 151 39 15 chr4 47458125 47459062 -154869285 + Tigger1 DNA MER2_type 8 921 -1497 451 0 0 0 chr4 47459062 47459112 -154869235 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1914 131 29 0 chr4 47459112 47459386 -154868961 - AluSx SINE Alu -1 331 1 8392 151 39 15 chr4 47459386 47459719 -154868628 + Tigger1 DNA MER2_type 921 1245 -1173 7893 107 1 0 chr4 47459719 47461660 -154866687 + L1PA7 LINE L1 4193 6143 -11 8392 151 39 15 chr4 47461660 47461979 -154866368 + Tigger1 DNA MER2_type 1245 1630 -788 26 50 0 0 chr4 47461979 47462019 -154866328 + AT_rich Low_complexity Low_complexity 1 40 0 326 71 0 0 chr4 47462032 47462074 -154866273 + Tigger1 DNA MER2_type 1615 1656 -762 1277 296 140 11 chr4 47462074 47462594 -154865753 + L2 LINE L2 2050 2636 -678 722 301 119 30 chr4 47462587 47463049 -154865298 - L2 LINE L2 -414 2900 2398 * 765 175 0 7 chr4 47463172 47463309 -154865038 + FLAM_C SINE Alu 1 136 -7 433 330 26 42 chr4 47463495 47463686 -154864661 - L3 LINE CR1 -85 1492 1305 302 302 38 9 chr4 47463752 47463858 -154864489 - MER117 DNA MER1_type -48 149 41 480 288 61 58 chr4 47464228 47464541 -154863806 + HAL1b LINE L1 432 745 -603 395 266 121 32 chr4 47464554 47464893 -154863454 + HAL1b LINE L1 860 1228 -120 29 78 0 0 chr4 47465020 47465084 -154863263 + AT_rich Low_complexity Low_complexity 1 64 0 306 281 73 0 chr4 47465100 47465182 -154863165 + MIR SINE MIR 126 213 -49 203 239 0 60 chr4 47465223 47465340 -154863007 + (TATAA)n Simple_repeat Simple_repeat 5 114 0 814 341 13 56 chr4 47465471 47465920 -154862427 + L1PA16 LINE L1 123 552 -6287 4533 254 11 4 chr4 47465930 47467331 -154861016 + L1PA16 LINE L1 2767 4178 -2671 * 5006 232 11 25 chr4 47467316 47468718 -154859629 + L1PA16 LINE L1 5486 6860 -9 23 0 0 0 chr4 47469155 47469178 -154859169 + AT_rich Low_complexity Low_complexity 1 23 0 1435 188 7 14 chr4 47470870 47471146 -154857201 + AluJo SINE Alu 37 310 -2 24 67 0 0 chr4 47471326 47471371 -154856976 + AT_rich Low_complexity Low_complexity 1 45 0 623 156 101 0 chr4 47471438 47471547 -154856800 - MSTD LTR MaLR -4 392 273 468 233 10 0 chr4 47471569 47471672 -154856675 - MSTD LTR MaLR -292 104 1 188 361 59 50 chr4 47473814 47473933 -154854414 + L2 LINE L2 3147 3266 -6 23 33 0 0 chr4 47474805 47474835 -154853512 + AT_rich Low_complexity Low_complexity 1 30 0 1241 102 6 0 chr4 47475273 47475440 -154852907 + AluSc SINE Alu 2 169 -140 1274 132 24 5 chr4 47475542 47475747 -154852600 - MSTA LTR MaLR -219 209 1 2315 68 0 0 chr4 47475752 47476074 -154852273 - AluY SINE Alu 0 311 1 583 253 12 42 chr4 47476080 47476246 -154852101 + MIR SINE MIR 96 256 -6 23 54 0 0 chr4 47476436 47476473 -154851874 + AT_rich Low_complexity Low_complexity 1 37 0 446 277 108 14 chr4 47476808 47476956 -154851391 + MIR SINE MIR 32 193 -69 592 185 0 25 chr4 47477733 47477878 -154850469 + FLAM_A SINE Alu 1 142 0 270 316 88 35 chr4 47478053 47478224 -154850123 + L3 LINE CR1 284 463 -1114 784 267 69 4 chr4 47478846 47479078 -154849269 - MIR SINE MIR 0 262 16 23 33 0 0 chr4 47479423 47479453 -154848894 + AT_rich Low_complexity Low_complexity 1 30 0 484 340 119 32 chr4 47479857 47480295 -154848052 - L2 LINE L2 0 3313 2838 2004 134 50 31 chr4 47481274 47481631 -154846716 - THE1B LTR MaLR 0 364 1 1515 206 3 3 chr4 47482197 47482483 -154845864 + AluJo SINE Alu 3 288 -24 216 0 0 0 chr4 47482484 47482508 -154845839 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 2197 116 0 0 chr4 47482523 47482825 -154845522 + AluSc SINE Alu 1 302 -7 22 0 0 0 chr4 47482973 47482995 -154845352 + AT_rich Low_complexity Low_complexity 1 22 0 12927 149 52 11 chr4 47483029 47484288 -154844059 + Tigger1 DNA MER2_type 1 1207 -1211 2153 99 17 3 chr4 47484288 47484590 -154843757 - AluY SINE Alu -5 306 1 12927 149 52 11 chr4 47484590 47485653 -154842694 + Tigger1 DNA MER2_type 1207 2418 0 1237 250 181 39 chr4 47485691 47486071 -154842276 - L1ME3 LINE L1 -12 6150 5825 2248 72 0 36 chr4 47486071 47486377 -154841970 + AluY SINE Alu 1 295 -16 1237 250 181 39 chr4 47486377 47486761 -154841586 - L1ME3 LINE L1 -337 5825 5284 809 233 172 14 chr4 47486794 47487231 -154841116 - L1ME3 LINE L1 -3259 2887 2382 405 272 115 14 chr4 47488432 47488719 -154839628 - L1ME4a LINE L1 -13 6108 5793 246 62 0 0 chr4 47488969 47489001 -154839346 + (TA)n Simple_repeat Simple_repeat 2 33 0 2125 123 0 0 chr4 47489001 47489286 -154839061 - AluSg SINE Alu -25 285 1 34516 35 1 0 chr4 47489798 47494772 -154833575 + L1PA3 LINE L1 1175 6155 0 338 220 33 55 chr4 47495596 47495687 -154832660 + MIR SINE MIR 1 89 -173 3448 106 10 6 chr4 47495687 47496196 -154832151 + MER9 LTR ERVK 1 511 0 23 42 0 21 chr4 47496952 47496987 -154831360 + AT_rich Low_complexity Low_complexity 1 36 -11 2815 13 0 0 chr4 47496987 47497298 -154831049 - AluYa5 SINE Alu 0 311 1 23 42 0 21 chr4 47497298 47497310 -154831037 + AT_rich Low_complexity Low_complexity 36 47 0 23 0 0 0 chr4 47497589 47497612 -154830735 + AT_rich Low_complexity Low_complexity 1 23 0 503 106 11 11 chr4 47497693 47497787 -154830560 - L1PA15 LINE L1 -4 6161 6068 28 29 0 0 chr4 47497834 47497869 -154830478 + AT_rich Low_complexity Low_complexity 1 35 0 294 357 70 0 chr4 47498855 47498984 -154829363 + L2 LINE L2 3170 3307 -6 470 154 26 13 chr4 47500203 47500281 -154828066 + MER20 DNA MER1_type 3 81 -138 325 253 16 54 chr4 47501307 47501493 -154826854 + (TA)n Simple_repeat Simple_repeat 1 179 0 21 36 0 0 chr4 47501498 47501526 -154826821 + AT_rich Low_complexity Low_complexity 1 28 0 284 304 165 25 chr4 47502388 47502546 -154825801 - MIR SINE MIR -17 245 66 21 36 0 0 chr4 47503306 47503334 -154825013 + AT_rich Low_complexity Low_complexity 1 28 0 278 273 68 38 chr4 47504137 47504297 -154824050 - MIR3 SINE MIR -64 144 9 235 298 0 0 chr4 47505260 47505317 -154823030 + MIR SINE MIR 203 259 -3 410 277 32 45 chr4 47505317 47505472 -154822875 - MIR SINE MIR -62 200 48 24 53 0 0 chr4 47505524 47505562 -154822785 + AT_rich Low_complexity Low_complexity 1 38 0 1158 82 29 0 chr4 47507522 47507692 -154820655 - L1MA1 LINE L1 -1 6301 6127 701 311 61 40 chr4 47507694 47507990 -154820357 - MER115 DNA AcHobo -60 633 332 195 390 81 17 chr4 47508150 47508322 -154820025 - MIR SINE MIR -62 200 18 243 79 0 0 chr4 47509084 47509122 -154819225 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1205 8 0 0 chr4 47509123 47509257 -154819090 - L1PA2 LINE L1 -13 6142 6009 346 65 0 0 chr4 47509460 47509506 -154818841 - MADE1 DNA Mariner 0 80 35 27 0 0 0 chr4 47509630 47509657 -154818690 + AT_rich Low_complexity Low_complexity 1 27 0 2091 117 0 0 chr4 47509672 47509955 -154818392 - AluSq SINE Alu -30 283 1 6025 151 19 6 chr4 47509974 47511704 -154816643 + L1MA4 LINE L1 4548 6300 0 182 301 146 0 chr4 47511848 47511951 -154816396 - L2 LINE L2 0 3313 3196 2174 110 7 3 chr4 47512925 47513235 -154815112 - AluSx SINE Alu -1 311 1 241 342 145 49 chr4 47513571 47514660 -154813687 + L2 LINE L2 837 2030 -1284 825 236 23 0 chr4 47514720 47514894 -154813453 + AluJo SINE Alu 127 304 -8 558 206 97 85 chr4 47515342 47515364 -154812983 - MER58B DNA MER1_type -2079 341 321 1059 79 0 0 chr4 47515364 47515503 -154812844 + MER85 DNA T2_type 1 139 0 558 206 97 85 chr4 47515503 47515586 -154812761 - MER58B DNA MER1_type -2099 321 231 2839 13 0 0 chr4 47515586 47515900 -154812447 + AluYb8 SINE Alu 1 314 -4 558 206 97 85 chr4 47515900 47515958 -154812389 - MER58B DNA MER1_type -2189 231 175 16822 34 1 0 chr4 47516202 47518998 -154809349 - L1PA3 LINE L1 -2 6153 3357 1973 151 10 0 chr4 47519017 47519316 -154809031 + AluJo SINE Alu 1 302 -10 353 156 0 31 chr4 47520259 47520323 -154808024 + L1ME1 LINE L1 6033 6094 -72 584 223 0 23 chr4 47520325 47520455 -154807892 + FLAM_A SINE Alu 1 127 -6 24 32 0 0 chr4 47520732 47520763 -154807584 + AT_rich Low_complexity Low_complexity 1 31 0 293 314 129 36 chr4 47520847 47521689 -154806658 + L1M4 LINE L1 2255 3175 -2971 186 313 141 0 chr4 47522110 47522174 -154806173 + MER5A DNA MER1_type 9 81 -108 304 369 166 29 chr4 47522368 47522712 -154805635 + L3 LINE CR1 1111 1501 -76 1555 210 3 13 chr4 47524522 47524822 -154803525 - AluJb SINE Alu -15 297 1 235 328 0 0 chr4 47528921 47528985 -154799362 - L2 LINE L2 -6 3307 3244 243 326 160 28 chr4 47529062 47529295 -154799052 - L2 LINE L2 -237 3035 2778 286 292 45 88 chr4 47529346 47529654 -154798693 - L2 LINE L2 -785 2529 2235 430 263 59 28 chr4 47529859 47530098 -154798249 - L1MC4a LINE L1 -116 6005 5769 22 56 0 0 chr4 47530098 47530134 -154798213 + AT_rich Low_complexity Low_complexity 1 36 0 624 244 52 80 chr4 47530857 47531196 -154797151 - L1MEd LINE L1 -860 1630 1251 315 291 66 48 chr4 47531299 47531526 -154796821 - L1MEd LINE L1 -4973 1146 916 215 226 12 36 chr4 47531606 47531690 -154796657 + T-rich Low_complexity Low_complexity 2 83 0 1779 110 0 90 chr4 47531937 47532247 -154796100 + AluY SINE Alu 1 282 -29 25 0 0 0 chr4 47532261 47532286 -154796061 + AT_rich Low_complexity Low_complexity 1 25 0 243 61 0 0 chr4 47532547 47532580 -154795767 + (TC)n Simple_repeat Simple_repeat 2 34 0 459 0 0 0 chr4 47532582 47532633 -154795714 + (TA)n Simple_repeat Simple_repeat 1 51 0 289 264 0 0 chr4 47532697 47532784 -154795563 + (TA)n Simple_repeat Simple_repeat 2 88 0 231 348 0 59 chr4 47532827 47532949 -154795398 + MIR SINE MIR 53 168 -40 273 57 0 0 chr4 47533028 47533063 -154795284 + (CAT)n Simple_repeat Simple_repeat 2 36 0 279 264 141 0 chr4 47533348 47533469 -154794878 + L2 LINE L2 3171 3308 -5 185 418 13 0 chr4 47533900 47533979 -154794368 + L2 LINE L2 3136 3215 -57 557 207 20 53 chr4 47533982 47534132 -154794215 + MIR SINE MIR 118 262 0 339 307 52 39 chr4 47534084 47534237 -154794110 - MIR SINE MIR -33 229 75 * 21 71 0 0 chr4 47535053 47535095 -154793252 + AT_rich Low_complexity Low_complexity 1 42 0 337 274 34 96 chr4 47535115 47535323 -154793024 - HAL1 LINE L1 -4 2503 2309 32 26 0 0 chr4 47535323 47535362 -154792985 + AT_rich Low_complexity Low_complexity 1 39 0 192 324 0 98 chr4 47536050 47536152 -154792195 + MER5A DNA MER1_type 95 186 -3 240 184 0 0 chr4 47536327 47536376 -154791971 + GA-rich Low_complexity Low_complexity 2 50 0 1098 79 0 0 chr4 47537962 47538102 -154790245 - MER50 LTR ERV1 -2 732 593 1571 48 35 35 chr4 47538102 47538331 -154790016 + L1PA7 LINE L1 5926 6154 0 468 179 75 9 chr4 47538341 47538447 -154789900 - L1M4c LINE L1 -5442 942 830 1403 240 101 36 chr4 47538458 47538992 -154789355 - MER50 LTR ERV1 -156 578 10 474 326 29 6 chr4 47539004 47539179 -154789168 - MIR SINE MIR -45 217 39 841 298 178 35 chr4 47539303 47539670 -154788677 - L2 LINE L2 -4 3309 2996 2103 152 35 3 chr4 47539670 47540046 -154788301 + MLT1B LTR MaLR 1 388 -2 841 298 178 35 chr4 47540046 47540433 -154787914 - L2 LINE L2 -317 2996 2438 6646 74 3 25 chr4 47540723 47542031 -154786316 + L1PA8 LINE L1 4760 6045 -127 2411 61 0 26 chr4 47542031 47542343 -154786004 + AluY SINE Alu 1 304 -7 6646 74 3 25 chr4 47542343 47542462 -154785885 + L1PA8 LINE L1 6045 6165 -7 709 190 56 7 chr4 47542656 47542798 -154785549 - MER58A DNA MER1_type -39 185 37 863 258 96 75 chr4 47543129 47543513 -154784834 + MLT1J1 LTR MaLR 55 446 0 862 215 57 0 chr4 47544180 47544357 -154783990 - MER58A DNA MER1_type -1 223 37 377 325 176 65 chr4 47544776 47545380 -154782967 + L2 LINE L2 2305 2975 -339 1264 295 63 37 chr4 47545430 47546030 -154782317 + MLT2F LTR ERVL 38 653 -10 196 311 234 12 chr4 47546032 47546199 -154782148 + L2 LINE L2 3008 3211 -102 1975 164 42 41 chr4 47546211 47546761 -154781586 + MLT2A2 LTR ERVL 1 554 0 318 50 0 0 chr4 47546788 47546828 -154781519 + (CA)n Simple_repeat Simple_repeat 2 41 0 675 182 72 33 chr4 47546867 47547048 -154781299 - LTR41 LTR ERVL -585 188 1 22 0 0 0 chr4 47547288 47547310 -154781037 + AT_rich Low_complexity Low_complexity 1 22 0 1626 223 41 37 chr4 47548413 47548875 -154779472 - MLT1C LTR MaLR -3 464 1 1767 194 16 80 chr4 47549519 47549968 -154778379 - MLT2B3 LTR ERVL -134 420 1 29 0 0 0 chr4 47551412 47551441 -154776906 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 47552047 47552068 -154776279 + AT_rich Low_complexity Low_complexity 1 21 0 3732 148 18 65 chr4 47552132 47552857 -154775490 - LTR8 LTR ERV1 0 691 1 1039 235 127 62 chr4 47553121 47553666 -154774681 - MER34C LTR ERV1 0 585 6 252 293 0 49 chr4 47553970 47554052 -154774295 + MIR SINE MIR 16 93 -115 26 0 0 0 chr4 47554157 47554183 -154774164 + AT_rich Low_complexity Low_complexity 1 26 0 2076 78 7 3 chr4 47554201 47554514 -154773833 + AluY SINE Alu 1 314 0 432 282 5 20 chr4 47554591 47554793 -154773554 + L1M4 LINE L1 2132 2330 -3816 1776 205 99 14 chr4 47554794 47554826 -154773521 - L1MD2 LINE L1 0 6359 6331 1104 251 17 0 chr4 47554826 47555061 -154773286 - MER8 DNA MER2_type 0 239 1 1776 205 99 14 chr4 47555061 47555443 -154772904 - L1MD2 LINE L1 -28 6331 5910 26 74 0 0 chr4 47555520 47555574 -154772773 + AT_rich Low_complexity Low_complexity 1 54 0 683 292 58 12 chr4 47555746 47555989 -154772358 + L1ME3A LINE L1 5630 5883 -287 25 65 0 0 chr4 47556279 47556325 -154772022 + AT_rich Low_complexity Low_complexity 1 46 0 192 361 0 0 chr4 47557749 47557810 -154770537 + MIR SINE MIR 195 255 -7 210 71 0 0 chr4 47557845 47557873 -154770474 + (CAAT)n Simple_repeat Simple_repeat 3 30 0 401 97 14 0 chr4 47557875 47557947 -154770400 + (TG)n Simple_repeat Simple_repeat 2 74 0 211 258 269 47 chr4 47559900 47560156 -154768191 - L2 LINE L2 0 3313 3001 197 213 43 0 chr4 47560201 47560248 -154768099 - L2 LINE L2 -1 3312 3264 397 325 11 0 chr4 47560252 47560382 -154767965 - MIR SINE MIR -37 171 38 308 318 88 35 chr4 47560553 47560723 -154767624 - MIR SINE MIR -73 189 11 224 338 68 47 chr4 47561130 47561278 -154767069 - MIR3 SINE MIR -17 191 41 33 0 0 0 chr4 47561321 47561354 -154766993 + AT_rich Low_complexity Low_complexity 1 33 0 293 324 20 0 chr4 47561927 47562075 -154766272 - L1M4 LINE L1 -1116 5732 5582 347 328 95 15 chr4 47562162 47562424 -154765923 - L1M4 LINE L1 -1394 5454 5172 24 56 0 42 chr4 47562594 47562665 -154765682 + AT_rich Low_complexity Low_complexity 1 68 0 2099 172 68 32 chr4 47562736 47563179 -154765168 - LTR2B LTR ERV1 0 490 32 336 269 97 22 chr4 47563519 47563653 -154764694 - L1M4 LINE L1 -2664 4184 4041 377 282 63 91 chr4 47563693 47563922 -154764425 - L1M4 LINE L1 -2869 3979 3762 1805 139 44 17 chr4 47563922 47564216 -154764131 - AluSq SINE Alu -11 302 1 377 282 63 91 chr4 47564216 47564348 -154763999 - L1M4 LINE L1 -3086 3762 3628 912 191 23 70 chr4 47564370 47564627 -154763720 - MER45B DNA AcHobo -11 1029 785 14234 227 16 22 chr4 47564634 47570076 -154758271 - L1PA16 LINE L1 0 7604 2231 838 317 17 35 chr4 47570692 47571096 -154757251 - L1M4 LINE L1 -6452 397 1 1888 185 107 36 chr4 47571105 47571554 -154756793 - MER45B DNA AcHobo -250 790 310 22 35 0 0 chr4 47572344 47572373 -154755974 + AT_rich Low_complexity Low_complexity 1 29 0 1459 89 0 98 chr4 47572388 47572612 -154755735 + AluSx SINE Alu 6 207 -105 2729 176 103 48 chr4 47572721 47573391 -154754956 + MER39 LTR ERV1 1 707 0 22 0 0 0 chr4 47573668 47573690 -154754657 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 47573980 47574001 -154754346 + AT_rich Low_complexity Low_complexity 1 21 0 465 312 136 70 chr4 47574938 47575778 -154752569 + L2 LINE L2 1684 2578 -736 255 61 0 0 chr4 47575835 47575868 -154752479 + (TG)n Simple_repeat Simple_repeat 1 33 0 2342 145 51 13 chr4 47575868 47576316 -154752031 - L1MB1 LINE L1 -15 6153 5689 678 94 0 0 chr4 47576316 47576412 -154751935 + L1MB1 LINE L1 5588 5683 -651 313 188 21 62 chr4 47576638 47576734 -154751613 + MER53 DNA DNA 98 189 0 201 74 0 0 chr4 47576848 47576875 -154751472 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 594 293 106 8 chr4 47577001 47577293 -154751054 + MLT1J1 LTR MaLR 69 377 -73 34 0 0 0 chr4 47577769 47577803 -154750544 + AT_rich Low_complexity Low_complexity 1 34 0 819 292 24 0 chr4 47577829 47578038 -154750309 - MER58A DNA MER1_type 0 224 11 243 162 15 29 chr4 47578147 47578215 -154750132 + CT-rich Low_complexity Low_complexity 3 69 0 360 297 75 0 chr4 47578577 47578756 -154749591 - L1MC/D LINE L1 -741 5687 5494 638 284 81 36 chr4 47578770 47578992 -154749355 - MIR SINE MIR -14 248 17 679 261 81 44 chr4 47579428 47580046 -154748301 - L1MC/D LINE L1 -1194 5021 4381 227 342 11 43 chr4 47580055 47580239 -154748108 - L1MC/D LINE L1 -2057 4158 3981 4713 99 18 16 chr4 47580267 47580975 -154747372 - L1PB1 LINE L1 -5 6146 5437 456 307 84 18 chr4 47580975 47581200 -154747147 - L1MC/D LINE L1 -2221 3994 3755 253 259 15 76 chr4 47581616 47581747 -154746600 - L1MC/D LINE L1 -2588 3627 3505 559 289 128 53 chr4 47581787 47582256 -154746091 + MLT1H LTR MaLR 3 549 0 243 154 19 19 chr4 47582256 47582308 -154746039 + MLT1H-int LTR MaLR 1 52 -1683 342 365 17 12 chr4 47582361 47582602 -154745745 + MLT1H-int LTR MaLR 303 544 -827 251 304 61 14 chr4 47583122 47583270 -154745077 - L1MC/D LINE L1 -6211 185 31 408 324 65 88 chr4 47583467 47583865 -154744482 - L1MEd LINE L1 -5664 455 67 475 301 51 42 chr4 47584074 47584305 -154744042 + L1ME3A LINE L1 4923 5151 -995 2316 104 55 0 chr4 47584305 47584650 -154743697 - THE1B LTR MaLR 0 364 1 475 301 51 42 chr4 47584650 47584890 -154743457 + L1ME3A LINE L1 5151 5398 -748 1349 206 180 13 chr4 47584943 47585331 -154743016 + MLT1D LTR MaLR 51 503 -2 587 239 174 18 chr4 47585360 47585636 -154742711 + L1ME3A LINE L1 5851 6169 -1 555 168 32 0 chr4 47586683 47586808 -154741539 + L1MB7 LINE L1 6056 6184 0 723 252 187 19 chr4 47587179 47587393 -154740954 + MIR SINE MIR 13 262 0 276 314 169 0 chr4 47587883 47588007 -154740340 - L3b LINE CR1 -43 1540 1396 1821 316 46 43 chr4 47588686 47589851 -154738496 - L2 LINE L2 -4 3309 2147 1961 133 30 3 chr4 47589857 47590194 -154738153 - L1MA9 LINE L1 -176 6136 5791 612 231 0 0 chr4 47590192 47590326 -154738021 + L1MA9 LINE L1 6157 6290 -22 * 946 251 73 50 chr4 47590339 47590682 -154737665 - L2 LINE L2 -1157 2157 1807 21 0 0 0 chr4 47591129 47591150 -154737197 + AT_rich Low_complexity Low_complexity 1 21 0 208 250 0 42 chr4 47591944 47592016 -154736331 + A-rich Low_complexity Low_complexity 3 71 0 437 351 42 5 chr4 47592381 47592572 -154735775 + MIR SINE MIR 63 260 -2 8030 64 0 11 chr4 47592857 47593897 -154734450 + L1P LINE L1 66 1094 -5052 183 42 0 0 chr4 47594562 47594586 -154733761 + (CAA)n Simple_repeat Simple_repeat 2 25 0 537 329 107 0 chr4 47594952 47595168 -154733179 + MIR SINE MIR 23 261 -1 3210 98 16 11 chr4 47595261 47595712 -154732635 - MLT2A2 LTR ERVL 0 453 1 369 0 0 0 chr4 47595838 47595879 -154732468 + (TG)n Simple_repeat Simple_repeat 2 42 0 4441 78 20 23 chr4 47596213 47597347 -154731000 - MER11A LTR ERVK 0 1266 1 21 71 0 0 chr4 47597461 47597503 -154730844 + AT_rich Low_complexity Low_complexity 1 42 0 280 370 76 43 chr4 47598048 47598654 -154729693 - L2 LINE L2 -447 2867 2242 244 253 25 38 chr4 47598848 47598927 -154729420 + L3 LINE CR1 1220 1297 -280 622 333 34 19 chr4 47598956 47599220 -154729127 + L3 LINE CR1 1220 1487 -90 1274 223 134 43 chr4 47599368 47599831 -154728516 - MLT1D LTR MaLR 0 505 1 186 267 13 53 chr4 47599856 47599931 -154728416 - MIR SINE MIR -81 181 110 348 127 0 0 chr4 47600341 47600396 -154727951 + (TG)n Simple_repeat Simple_repeat 2 56 0 191 183 150 17 chr4 47600626 47600686 -154727661 - MIR SINE MIR -70 192 125 183 80 0 0 chr4 47601402 47601427 -154726920 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 3748 145 19 71 chr4 47601608 47602436 -154725911 - LTR1 LTR ERV1 0 785 1 215 79 26 0 chr4 47602445 47602483 -154725864 + (TG)n Simple_repeat Simple_repeat 1 39 0 216 0 0 0 chr4 47603900 47603924 -154724423 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 322 230 8 135 chr4 47604234 47604360 -154723987 + L2 LINE L2 3158 3267 -5 259 287 32 83 chr4 47605116 47605273 -154723074 - MIR SINE MIR -56 206 58 425 274 155 18 chr4 47605374 47605542 -154722805 - MIR SINE MIR 0 262 72 194 0 39 0 chr4 47605543 47605569 -154722778 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 9685 47 2 138 chr4 47605569 47607151 -154721196 - SVA Other Other -19 1367 2 296 0 0 102 chr4 47607160 47607209 -154721138 + (GGGAGA)n Simple_repeat Simple_repeat 3 46 0 209 268 0 0 chr4 47607210 47607251 -154721096 - MIR SINE MIR -182 80 40 315 71 0 0 chr4 47607735 47607777 -154720570 + (TG)n Simple_repeat Simple_repeat 2 43 0 27 29 0 0 chr4 47608368 47608402 -154719945 + AT_rich Low_complexity Low_complexity 1 34 0 198 159 43 0 chr4 47608821 47608890 -154719457 + (TA)n Simple_repeat Simple_repeat 2 73 0 251 341 57 34 chr4 47609351 47609439 -154718908 + L2 LINE L2 3155 3244 -28 520 274 54 32 chr4 47610119 47610305 -154718042 - MIR SINE MIR -41 221 32 2326 121 28 25 chr4 47610559 47610922 -154717425 - THE1B LTR MaLR 0 364 1 205 250 0 0 chr4 47610966 47611006 -154717341 + polypurine Low_complexity Low_complexity 6 45 0 273 328 101 8 chr4 47611089 47611208 -154717139 - LTR33 LTR ERVL -364 157 28 360 0 0 0 chr4 47611456 47611496 -154716851 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 674 192 0 0 chr4 47611562 47611692 -154716655 - L1ME1 LINE L1 -12 6154 6025 502 224 145 0 chr4 47611898 47612050 -154716297 + MER5B DNA MER1_type 1 174 -4 354 155 119 12 chr4 47612062 47612146 -154716201 - MER5B DNA MER1_type 0 178 86 272 291 35 12 chr4 47615262 47615348 -154712999 + MIR SINE MIR 8 95 -167 344 354 84 14 chr4 47615418 47615633 -154712714 - LTR33A LTR ERVL -162 361 132 1350 218 128 0 chr4 47616474 47616786 -154711561 + L1MDa LINE L1 10 361 -6179 805 281 102 44 chr4 47616915 47617386 -154710961 - MLT1H LTR MaLR -2 547 1 191 307 20 69 chr4 47617511 47617612 -154710735 + L2 LINE L2 2976 3071 -201 23 68 0 0 chr4 47618784 47618828 -154709519 + AT_rich Low_complexity Low_complexity 1 44 0 805 204 74 17 chr4 47619078 47619254 -154709093 - MER97b DNA MER1_type? -844 209 24 234 382 38 28 chr4 47619366 47619683 -154708664 + L2 LINE L2 2583 2902 -412 6071 81 11 11 chr4 47619765 47621071 -154707276 - SVA Other Other -954 1384 1 243 88 0 0 chr4 47621671 47621705 -154706642 + (A)n Simple_repeat Simple_repeat 1 34 0 2196 138 48 3 chr4 47622187 47622558 -154705789 - MLT1B LTR MaLR 0 390 3 311 273 0 56 chr4 47624608 47624751 -154703596 + CT-rich Low_complexity Low_complexity 4 138 0 204 158 0 0 chr4 47625336 47625374 -154702973 + GA-rich Low_complexity Low_complexity 3 40 0 727 140 26 0 chr4 47626801 47626915 -154701432 + FLAM_C SINE Alu 1 117 -16 26 50 0 0 chr4 47627040 47627080 -154701267 + AT_rich Low_complexity Low_complexity 1 40 0 407 263 133 40 chr4 47629220 47629520 -154698827 + L1ME4a LINE L1 5629 5956 -165 243 0 0 0 chr4 47631626 47631653 -154696694 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 2077 142 39 25 chr4 47631726 47632085 -154696262 - THE1B LTR MaLR 0 364 1 317 294 94 84 chr4 47634643 47634929 -154693418 + L2 LINE L2 2573 2861 -453 2782 259 64 17 chr4 47637890 47638661 -154689686 + L1M4 LINE L1 51 857 -5685 * 3860 166 54 57 chr4 47638641 47639601 -154688746 + L1MB7 LINE L1 5219 6167 -17 200 243 0 27 chr4 47640229 47640303 -154688044 + (TTTA)n Simple_repeat Simple_repeat 1 72 0 992 243 84 36 chr4 47641749 47642536 -154685811 - L1MC5 LINE L1 -60 7901 7154 2448 136 5 14 chr4 47642732 47643174 -154685173 + SVA Other Other 1 438 -948 185 0 40 0 chr4 47643322 47643347 -154685000 + (TA)n Simple_repeat Simple_repeat 1 26 0 197 395 44 9 chr4 47643893 47644007 -154684340 - L2 LINE L2 -8 3264 3147 368 41 20 0 chr4 47645552 47645601 -154682746 + MADE1 DNA Mariner 7 56 -24 191 189 19 0 chr4 47646544 47646597 -154681750 + CT-rich Low_complexity Low_complexity 4 57 0 527 305 117 9 chr4 47647237 47647262 -154681085 + MIR SINE MIR 14 35 -227 2646 252 39 23 chr4 47647262 47648140 -154680207 + MER97a DNA MER1_type 2 893 -1 527 305 117 9 chr4 47648140 47648337 -154680010 + MIR SINE MIR 35 260 -2 243 0 0 0 chr4 47648736 47648763 -154679584 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 185 0 40 0 chr4 47648847 47648872 -154679475 + (TTAA)n Simple_repeat Simple_repeat 2 27 0 346 324 153 19 chr4 47648882 47649098 -154679249 - MIR SINE MIR -15 247 3 271 358 82 15 chr4 47650198 47650332 -154678015 + MIR SINE MIR 12 154 -108 893 235 132 58 chr4 47650355 47650885 -154677462 - MLT1E3 LTR MaLR -11 613 3 182 323 0 71 chr4 47650887 47650986 -154677361 + MIR SINE MIR 168 259 -3 297 300 67 47 chr4 47652269 47652419 -154675928 - MIR3 SINE MIR -3 205 53 1997 104 75 0 chr4 47703111 47703390 -154624957 - AluSx SINE Alu -8 304 5 911 223 67 70 chr4 47703393 47703738 -154624609 - L1M4 LINE L1 -6189 353 10 836 164 23 35 chr4 47704117 47704288 -154624059 - Tigger4(Zombi) DNA MER2_type 0 2731 2563 735 353 107 22 chr4 47704437 47704559 -154623788 - L2 LINE L2 -1381 1933 1823 2451 119 19 5 chr4 47704559 47704929 -154623418 - THE1C LTR MaLR 0 375 1 735 353 107 22 chr4 47704929 47705565 -154622782 - L2 LINE L2 -1491 1823 1111 180 188 62 21 chr4 47705783 47705831 -154622516 - MIR SINE MIR -113 149 100 231 285 104 35 chr4 47706267 47706411 -154621936 - MER102a DNA MER1_type -9 321 168 180 0 0 0 chr4 47706805 47706825 -154621522 + (A)n Simple_repeat Simple_repeat 1 20 0 253 298 111 6 chr4 47707167 47707338 -154621009 - MIR SINE MIR -26 236 48 2119 89 0 4 chr4 47707520 47707914 -154620433 + AluSg SINE Alu 1 393 0 24 0 0 0 chr4 47708530 47708554 -154619793 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr4 47709038 47709065 -154619282 + AT_rich Low_complexity Low_complexity 1 27 0 3208 128 49 6 chr4 47710439 47710969 -154617378 + MER41C LTR ERV1 1 553 -1 2285 205 19 40 chr4 47711834 47711870 -154616477 - MLT2B3 LTR ERVL -4 550 515 216 111 0 0 chr4 47711870 47711906 -154616441 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 2285 205 19 40 chr4 47711906 47712348 -154615999 - MLT2B3 LTR ERVL -39 515 82 365 175 0 0 chr4 47712448 47712511 -154615836 - MLT2B3 LTR ERVL -489 65 3 272 277 108 15 chr4 47712562 47712692 -154615655 - L2 LINE L2 -370 2944 2803 216 311 66 0 chr4 47713902 47713963 -154614384 - L2 LINE L2 -34 3279 3215 21 0 0 0 chr4 47714002 47714023 -154614324 + AT_rich Low_complexity Low_complexity 1 21 0 412 138 24 16 chr4 47714624 47714747 -154613600 + (TA)n Simple_repeat Simple_repeat 2 125 0 241 356 0 0 chr4 47715266 47715339 -154613008 - L2 LINE L2 -6 3266 3194 1088 267 233 10 chr4 47715342 47715815 -154612532 + MLT1G1 LTR MaLR 3 549 0 1326 302 63 73 chr4 47716334 47717275 -154611072 + L2 LINE L2 2383 3313 0 188 343 20 39 chr4 47717940 47718042 -154610305 - L2 LINE L2 -22 3291 3192 244 314 57 48 chr4 47718186 47718310 -154610037 - L2 LINE L2 -12 3301 3177 2690 26 3 0 chr4 47718505 47718814 -154609533 - AluY SINE Alu -1 310 1 278 205 0 51 chr4 47719344 47719422 -154608925 + L1MEc LINE L1 20 93 -6303 1793 293 81 10 chr4 47719426 47720154 -154608193 + L1MEc LINE L1 131 910 -5486 1111 230 97 27 chr4 47721171 47721595 -154606752 + MLT1D LTR MaLR 1 467 0 1333 254 75 32 chr4 47721719 47722188 -154606159 - LTR16C LTR ERVL -2 489 1 266 191 0 0 chr4 47722343 47722390 -154605957 - L1M2 LINE L1 -635 7075 7029 * 293 163 0 0 chr4 47722381 47722430 -154605917 + L1 LINE L1 4752 4800 -1346 13988 190 26 19 chr4 47722435 47723187 -154605160 - L1M2 LINE L1 -684 7026 6280 631 191 64 0 chr4 47723187 47723297 -154605050 + FLAM_A SINE Alu 2 118 -15 13988 190 26 19 chr4 47723297 47726083 -154602264 - L1M2 LINE L1 -1430 6280 3463 293 115 0 19 chr4 47726552 47726604 -154601743 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 194 308 132 0 chr4 47726847 47726938 -154601409 + L2 LINE L2 3008 3110 -203 1009 244 47 6 chr4 47726993 47727453 -154600894 + MLT1F1 LTR MaLR 13 558 -9 546 235 118 0 chr4 47727510 47727646 -154600701 + MER3 DNA MER1_type 47 198 -11 422 208 20 101 chr4 47727674 47727823 -154600524 + L2 LINE L2 3164 3300 -13 1603 214 46 20 chr4 47727831 47728182 -154600165 - MLT1A2 LTR MaLR -11 363 4 3476 94 31 10 chr4 47728192 47728712 -154599635 - L1PA15 LINE L1 -8 6157 5627 354 296 10 10 chr4 47728715 47728813 -154599534 - L1M2 LINE L1 -5096 2400 2303 * 473 92 0 0 chr4 47728810 47728875 -154599472 - L1P4 LINE L1 -543 5622 5558 6447 141 53 25 chr4 47729086 47730006 -154598341 - Tigger3b DNA MER2_type -1797 1231 268 2436 161 101 19 chr4 47730006 47730522 -154597825 - LTR64 LTR ERVK 0 558 1 6447 141 53 25 chr4 47730522 47730782 -154597565 - Tigger3b DNA MER2_type -2760 268 17 207 0 0 0 chr4 47730880 47730903 -154597444 + (A)n Simple_repeat Simple_repeat 1 23 0 665 256 101 22 chr4 47731466 47731693 -154596654 - MIR SINE MIR -10 252 8 1301 223 32 7 chr4 47732132 47732442 -154595905 - MER82 DNA MER2_type -193 460 143 816 246 109 8 chr4 47732455 47732703 -154595644 + L1M4 LINE L1 3589 3861 -2285 1523 265 116 41 chr4 47732712 47733144 -154595203 + MLT2F LTR ERVL 10 495 -168 1531 202 0 6 chr4 47733144 47733456 -154594891 - AluSg SINE Alu 0 310 1 1523 265 116 41 chr4 47733456 47733582 -154594765 + MLT2F LTR ERVL 495 610 -53 1274 271 48 56 chr4 47733823 47734130 -154594217 + MLT2F LTR ERVL 185 488 -175 2210 123 0 0 chr4 47734130 47734440 -154593907 - AluSg SINE Alu 0 310 1 1274 271 48 56 chr4 47734440 47734615 -154593732 + MLT2F LTR ERVL 488 663 0 3842 233 82 25 chr4 47734636 47735961 -154592386 + L1M4 LINE L1 3873 5272 -874 282 120 40 0 chr4 47735963 47736038 -154592309 + (TA)n Simple_repeat Simple_repeat 2 79 0 3763 0 0 0 chr4 47736344 47736762 -154591585 + L1HS LINE L1 5738 6155 0 180 0 0 0 chr4 47736777 47736797 -154591550 + (A)n Simple_repeat Simple_repeat 1 20 0 1410 173 188 10 chr4 47737260 47737425 -154590922 - L1MB7 LINE L1 -22 6162 6028 1944 150 10 0 chr4 47737425 47737719 -154590628 - AluSp SINE Alu -16 297 1 1410 173 188 10 chr4 47737719 47737946 -154590401 - L1MB7 LINE L1 -156 6028 5700 1836 245 57 64 chr4 47738008 47738435 -154589912 - L1M4 LINE L1 -3437 3207 2779 2187 93 13 17 chr4 47738435 47738737 -154589610 - AluY SINE Alu -10 301 1 1836 245 57 64 chr4 47738737 47739519 -154588828 - L1M4 LINE L1 -3865 2779 2041 39222 77 10 8 chr4 47739528 47745647 -154582700 + L1PA5 LINE L1 11 6146 -8 4547 227 54 40 chr4 47745664 47746362 -154581985 - L1M4 LINE L1 -4769 1877 1191 3067 116 13 2 chr4 47746362 47746810 -154581537 + MLT2A2 LTR ERVL 1 453 0 4547 227 54 40 chr4 47746810 47746885 -154581462 - L1M4 LINE L1 -5455 1191 1119 1049 253 122 6 chr4 47746885 47747205 -154581142 - LTR18A LTR ERVL 0 357 1 4547 227 54 40 chr4 47747205 47747920 -154580427 - L1M4 LINE L1 -5527 1119 343 183 80 0 0 chr4 47747920 47747945 -154580402 + (T)n Simple_repeat Simple_repeat 1 25 0 1425 185 73 7 chr4 47747954 47748240 -154580107 - AluSx SINE Alu -3 309 5 2031 148 0 10 chr4 47749478 47749775 -154578572 - AluJb SINE Alu -18 294 1 27 0 0 0 chr4 47750902 47750929 -154577418 + AT_rich Low_complexity Low_complexity 1 27 0 1307 236 0 14 chr4 47751126 47751410 -154576937 + AluJo SINE Alu 3 282 -30 481 275 85 37 chr4 47752053 47752242 -154576105 - MIR SINE MIR -2 260 63 2527 216 40 60 chr4 47752287 47752953 -154575394 - MER82 DNA MER2_type 0 653 1 249 298 210 0 chr4 47753033 47753157 -154575190 - MIR SINE MIR -108 154 5 1318 223 132 12 chr4 47753160 47753479 -154574868 - LTR18A LTR ERVL 0 357 1 1529 147 0 0 chr4 47753499 47753723 -154574624 - HERVL18 LTR ERVL -139 5908 5685 * 7375 172 7 5 chr4 47753698 47755163 -154573184 - HERVL18 LTR ERVL -4509 1538 2 1301 232 155 3 chr4 47755170 47755480 -154572867 - LTR18A LTR ERVL 0 357 1 431 306 28 46 chr4 47756289 47756505 -154571842 + MIR SINE MIR 1 212 -50 3325 162 67 28 chr4 47759641 47760344 -154568003 - L1MB5 LINE L1 -22 6152 5423 189 0 0 0 chr4 47760866 47760887 -154567460 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2284 240 56 13 chr4 47761369 47762048 -154566299 + L1ME1 LINE L1 5454 6161 -5 269 346 39 0 chr4 47762086 47762190 -154566157 - MIR SINE MIR 0 262 155 679 133 9 18 chr4 47762200 47762313 -154566034 - AluSq SINE Alu -90 223 112 366 329 41 7 chr4 47762320 47762466 -154565881 - MIR SINE MIR -110 152 2 219 209 23 12 chr4 47763187 47763273 -154565074 + (TA)n Simple_repeat Simple_repeat 2 88 0 527 313 13 0 chr4 47763375 47763540 -154564807 + MIR SINE MIR 61 227 -35 21 36 0 0 chr4 47764024 47764052 -154564295 + AT_rich Low_complexity Low_complexity 1 28 0 376 273 39 19 chr4 47764322 47764479 -154563868 - MIR SINE MIR -67 141 30 1164 234 62 31 chr4 47764880 47765234 -154563113 - MLT1A1 LTR MaLR 0 365 1 451 257 176 0 chr4 47765234 47765382 -154562965 - MIR SINE MIR -25 237 64 261 0 0 0 chr4 47765655 47765684 -154562663 + (CA)n Simple_repeat Simple_repeat 2 30 0 899 272 32 24 chr4 47766038 47766284 -154562063 - MIR SINE MIR -2 260 13 925 228 47 24 chr4 47766792 47767047 -154561300 - MIR SINE MIR -1 261 1 348 247 47 0 chr4 47767098 47767183 -154561164 - L2 LINE L2 0 3272 3184 1026 239 95 88 chr4 47767470 47767967 -154560380 - LTR33 LTR ERVL -6 515 16 225 240 33 7 chr4 47769272 47769422 -154558925 + (TA)n Simple_repeat Simple_repeat 2 155 0 283 191 191 21 chr4 47769779 47769873 -154558474 - MIR SINE MIR -4 258 149 203 268 89 106 chr4 47769917 47770040 -154558307 + MIR SINE MIR 84 204 -58 465 19 0 0 chr4 47770059 47770113 -154558234 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 22 0 0 0 chr4 47770735 47770757 -154557590 + AT_rich Low_complexity Low_complexity 1 22 0 1239 202 46 83 chr4 47771249 47771345 -154557002 + MER58B DNA MER1_type 4 102 -2318 2110 119 6 16 chr4 47771345 47771656 -154556691 - AluSc SINE Alu -1 308 1 1239 202 46 83 chr4 47771656 47771910 -154556437 + MER58B DNA MER1_type 102 341 0 2451 54 0 0 chr4 47772283 47772578 -154555769 + AluY SINE Alu 1 295 -16 1505 195 82 39 chr4 47773989 47774353 -154553994 - MLT1B LTR MaLR 0 390 11 22 0 0 0 chr4 47774393 47774415 -154553932 + AT_rich Low_complexity Low_complexity 1 22 0 1948 187 14 17 chr4 47774610 47774968 -154553379 - MLT1A1 LTR MaLR 0 365 9 300 118 44 0 chr4 47775002 47775070 -154553277 + (TA)n Simple_repeat Simple_repeat 2 72 0 421 280 39 50 chr4 47775658 47775867 -154552480 - MIR SINE MIR -52 210 6 217 317 87 48 chr4 47776706 47776810 -154551537 - L2 LINE L2 -56 3216 3109 446 199 54 102 chr4 47777131 47777317 -154551030 + MIR SINE MIR 64 240 -22 21 36 0 0 chr4 47777326 47777354 -154550993 + AT_rich Low_complexity Low_complexity 1 28 0 258 310 16 62 chr4 47777431 47777560 -154550787 - L2 LINE L2 -1 3312 3190 1162 380 31 53 chr4 47777623 47778041 -154550306 + MLT2D LTR ERVL 1 409 -5 585 345 19 19 chr4 47778880 47779138 -154549209 - MIR SINE MIR -2 260 3 310 235 0 0 chr4 47779345 47779413 -154548934 + L1MC4 LINE L1 6636 6703 -1339 262 243 0 43 chr4 47779605 47779675 -154548672 - L2 LINE L2 -5 3267 3201 765 241 37 5 chr4 47781432 47781623 -154546724 + LTR33 LTR ERVL 21 217 -304 306 297 169 62 chr4 47782026 47782380 -154545967 - L2 LINE L2 -727 2587 2196 318 331 39 39 chr4 47782412 47782590 -154545757 - MER5A DNA MER1_type -5 184 7 2241 176 32 17 chr4 47782647 47783112 -154545235 + L1M3 LINE L1 5256 5727 -456 26 0 0 0 chr4 47783161 47783187 -154545160 + AT_rich Low_complexity Low_complexity 1 26 0 244 294 53 47 chr4 47783339 47783699 -154544648 + L1M4 LINE L1 2205 2566 -3580 1121 182 15 0 chr4 47783804 47784002 -154544345 - AluJb SINE Alu -20 292 92 27 49 0 0 chr4 47784190 47784231 -154544116 + AT_rich Low_complexity Low_complexity 1 41 0 363 324 148 55 chr4 47784634 47785000 -154543347 + L2 LINE L2 1473 1914 -1400 1457 162 4 4 chr4 47785000 47785259 -154543088 - L1MA4A LINE L1 -5 6298 6040 363 324 148 55 chr4 47785259 47785472 -154542875 + L2 LINE L2 1914 2106 -1208 22 35 0 0 chr4 47785695 47785724 -154542623 + AT_rich Low_complexity Low_complexity 1 29 0 8591 155 24 4 chr4 47786759 47788983 -154539364 + L1PA15 LINE L1 3718 5985 -178 1442 173 124 59 chr4 47788983 47789158 -154539189 + MSTA LTR MaLR 1 163 -265 4778 58 2 8 chr4 47789158 47789803 -154538544 + L1PA7 LINE L1 5535 6175 0 1442 173 124 59 chr4 47789803 47790014 -154538333 + MSTA LTR MaLR 163 413 -15 1021 143 10 25 chr4 47790015 47790211 -154538136 + L1PA15 LINE L1 5971 6163 -2 202 250 19 0 chr4 47790812 47790864 -154537483 + L2 LINE L2 2394 2446 -868 474 387 54 5 chr4 47791247 47791433 -154536914 + MER91A DNA MER1_type 2 196 0 252 306 120 35 chr4 47791656 47792031 -154536316 + MLT1L LTR MaLR 124 611 -3 446 306 77 33 chr4 47793204 47793541 -154534806 + L1M4 LINE L1 2683 3034 -3112 405 0 0 0 chr4 47793871 47793916 -154534431 + (TG)n Simple_repeat Simple_repeat 1 45 0 25 0 0 0 chr4 47793967 47793992 -154534355 + AT_rich Low_complexity Low_complexity 1 25 0 267 153 0 51 chr4 47793992 47794051 -154534296 - L1MA4 LINE L1 -14 6286 6231 5635 157 20 5 chr4 47794054 47795276 -154533071 - L1MA4 LINE L1 -36 6264 5027 22 0 0 0 chr4 47795585 47795607 -154532740 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr4 47796603 47796646 -154531701 + AT_rich Low_complexity Low_complexity 1 43 0 249 229 17 34 chr4 47796653 47796771 -154531576 + (TA)n Simple_repeat Simple_repeat 1 116 0 2503 47 0 0 chr4 47796965 47797264 -154531083 - AluY SINE Alu -12 299 1 383 293 134 66 chr4 47797437 47797555 -154530792 + MLT1G1 LTR MaLR 79 188 -407 552 286 91 63 chr4 47797555 47798080 -154530267 - MER34 LTR ERV1 -2 540 1 383 293 134 66 chr4 47798080 47798415 -154529932 + MLT1G1 LTR MaLR 188 563 -32 330 263 0 32 chr4 47798961 47799056 -154529291 - L2 LINE L2 0 3313 3222 2129 110 10 0 chr4 47799354 47799644 -154528703 - AluSg SINE Alu -14 296 4 21 0 0 0 chr4 47800097 47800118 -154528229 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr4 47801149 47801181 -154527166 + AT_rich Low_complexity Low_complexity 1 32 0 620 300 95 44 chr4 47803729 47804046 -154524301 - MLT1K LTR MaLR -18 570 238 270 303 33 33 chr4 47804102 47804224 -154524123 - L2 LINE L2 -1073 2241 2120 23 68 0 0 chr4 47804885 47804929 -154523418 + AT_rich Low_complexity Low_complexity 1 44 0 277 365 14 20 chr4 47805593 47805741 -154522606 + L1PB4 LINE L1 122 268 -5936 7402 255 42 45 chr4 47806015 47808423 -154519924 + L1PB4 LINE L1 395 2814 -3389 2188 84 3 42 chr4 47808423 47808731 -154519616 + AluSq SINE Alu 1 296 -17 7402 255 42 45 chr4 47808731 47810358 -154517989 + L1PB4 LINE L1 2814 4444 -1759 5037 148 20 10 chr4 47810358 47811615 -154516732 + L1PB4 LINE L1 4939 6211 -2 1613 204 23 0 chr4 47812073 47812377 -154515970 + AluJo SINE Alu 1 311 -1 193 222 120 83 chr4 47812412 47812520 -154515827 + MER5A DNA MER1_type 56 167 -22 * 321 289 0 31 chr4 47812455 47812552 -154515795 - MER5A DNA MER1_type -94 95 2 601 310 75 19 chr4 47813168 47813436 -154514911 - L2 LINE L2 -1 3312 3030 265 266 238 7 chr4 47813520 47813663 -154514684 - MLT1L LTR MaLR -122 493 318 2047 128 0 3 chr4 47814997 47815286 -154513061 + AluSx SINE Alu 1 288 -24 32 0 0 0 chr4 47815454 47815486 -154512861 + AT_rich Low_complexity Low_complexity 1 32 0 279 161 0 0 chr4 47815556 47815612 -154512735 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 244 300 0 0 chr4 47815685 47815775 -154512572 - L1MC4 LINE L1 -1339 6703 6614 35508 80 10 3 chr4 47815827 47820637 -154507710 + L1PA5 LINE L1 11 4851 -1295 7196 56 2 1 chr4 47820737 47821718 -154506629 + L1PA5 LINE L1 5174 6154 0 224 219 0 0 chr4 47821905 47821946 -154506401 + (TATG)n Simple_repeat Simple_repeat 2 42 0 228 214 0 0 chr4 47822011 47822067 -154506280 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 756 262 172 25 chr4 47823001 47823444 -154504903 - L1MC4 LINE L1 0 8042 7535 12326 52 2 1 chr4 47824204 47826537 -154501810 - L1PA5 LINE L1 0 6154 3822 2292 46 0 0 chr4 47826537 47826822 -154501525 + L1P LINE L1 3504 3788 -2358 675 260 149 29 chr4 47826822 47827164 -154501183 - MLT1L LTR MaLR -115 500 118 1729 192 32 17 chr4 47827184 47827528 -154500819 - MLT1A1 LTR MaLR -16 349 1 2110 144 0 0 chr4 47827697 47827995 -154500352 - AluSx SINE Alu -14 298 1 494 254 21 42 chr4 47828324 47828466 -154499881 - MER63 DNA MER1_type -241 821 683 279 203 17 0 chr4 47828488 47828547 -154499800 + MER63 DNA MER1_type 2 687 -149 1757 202 32 3 chr4 47828567 47828914 -154499433 - MLT1A1 LTR MaLR -6 359 3 263 167 0 0 chr4 47828932 47828974 -154499373 - MER63 DNA MER1_type -1018 43 2 294 291 94 8 chr4 47829555 47829682 -154498665 + L2 LINE L2 2872 3009 -263 1247 203 95 54 chr4 47829682 47830051 -154498296 - MLT1B LTR MaLR -6 384 1 341 351 45 57 chr4 47830063 47830328 -154498019 + L2 LINE L2 3036 3297 -16 209 274 16 0 chr4 47830416 47830478 -154497869 - MIR SINE MIR -29 233 171 313 283 190 5 chr4 47830545 47830729 -154497618 - L1ME LINE L1 -485 5636 5419 303 332 81 69 chr4 47831277 47831524 -154496823 + L2 LINE L2 3023 3272 0 372 42 0 0 chr4 47831605 47831653 -154496694 - MADE1 DNA Mariner 0 80 33 491 248 14 35 chr4 47831779 47831924 -154496423 - MER76 LTR ERV -153 535 394 2874 196 32 56 chr4 47831931 47832624 -154495723 + LTR8 LTR ERV1 16 691 0 697 234 71 53 chr4 47832666 47832948 -154495399 - MER76 LTR ERV -401 287 1 314 233 67 73 chr4 47834012 47834162 -154494185 + L1ME4a LINE L1 5955 6103 -18 260 357 90 62 chr4 47834165 47834588 -154493759 - L2 LINE L2 -2054 1260 826 456 312 50 15 chr4 47835517 47835716 -154492631 - MLT1H LTR MaLR -236 313 108 929 189 0 56 chr4 47835980 47836094 -154492253 + MLT1B LTR MaLR 1 120 -270 1983 141 7 3 chr4 47836094 47836393 -154491954 + AluSx SINE Alu 12 311 -1 929 189 0 56 chr4 47836393 47836609 -154491738 + MLT1B LTR MaLR 120 388 -2 268 286 0 11 chr4 47838586 47838677 -154489670 - LTR67 LTR ERVL -11 546 457 397 350 40 20 chr4 47839299 47839499 -154488848 - MIR SINE MIR -12 250 47 192 158 0 0 chr4 47839512 47839550 -154488797 + CT-rich Low_complexity Low_complexity 2 39 0 23 0 0 0 chr4 47839712 47839735 -154488612 + AT_rich Low_complexity Low_complexity 1 23 0 856 261 100 9 chr4 47840586 47840816 -154487531 + MIR SINE MIR 1 251 -11 255 254 97 22 chr4 47840840 47840974 -154487373 - L1ME LINE L1 -263 5858 5715 420 300 36 16 chr4 47840986 47841233 -154487114 - L1ME LINE L1 -1487 4659 4408 2412 76 0 3 chr4 47841493 47841796 -154486551 + AluY SINE Alu 1 302 -9 1323 167 0 4 chr4 47841917 47842150 -154486197 + AluY SINE Alu 80 311 0 522 334 163 24 chr4 47842614 47842988 -154485359 - L2 LINE L2 -84 3229 2804 605 232 172 0 chr4 47843010 47843161 -154485186 - MER5A DNA MER1_type -6 183 7 1938 303 213 22 chr4 47843181 47844783 -154483564 - L2 LINE L2 -528 2786 879 2394 76 7 0 chr4 47846893 47847196 -154481151 - AluSp SINE Alu -8 305 1 818 310 39 0 chr4 47848019 47848251 -154480096 - MIR SINE MIR -5 257 17 23 33 0 0 chr4 47848658 47848688 -154479659 + AT_rich Low_complexity Low_complexity 1 30 0 2264 91 0 22 chr4 47849596 47849914 -154478433 - AluY SINE Alu 0 311 1 206 416 74 0 chr4 47850544 47850693 -154477654 - MIR3 SINE MIR -17 191 32 1666 173 30 0 chr4 47852913 47853214 -154475133 - AluJo SINE Alu -2 310 1 343 362 116 9 chr4 47853927 47854151 -154474196 - MIR SINE MIR 0 262 15 32 0 0 0 chr4 47854747 47854779 -154473568 + AT_rich Low_complexity Low_complexity 1 32 0 1952 130 11 59 chr4 47855824 47856178 -154472169 + MER1B DNA MER1_type 1 337 0 376 235 83 136 chr4 47856963 47857197 -154471150 + L1ME4a LINE L1 5615 5811 -310 1953 153 3 0 chr4 47857197 47857492 -154470855 + AluSx SINE Alu 1 296 -16 376 235 83 136 chr4 47857492 47857750 -154470597 + L1ME4a LINE L1 5811 6081 -40 269 316 34 26 chr4 47859299 47859416 -154468931 - MIR SINE MIR -89 173 56 4622 163 17 0 chr4 47859706 47860529 -154467818 - L1PB4 LINE L1 -3 6153 5317 2565 99 0 0 chr4 47860544 47860898 -154467449 - L1PB1 LINE L1 -1 6150 5797 1296 82 41 0 chr4 47860906 47861102 -154467245 + L1P5 LINE L1 5254 5457 -694 250 78 0 78 chr4 47861099 47861150 -154467197 - L1M LINE L1 -972 5331 5285 * 239 377 0 0 chr4 47861242 47861319 -154467028 - L1M2 LINE L1 -5933 916 840 1032 73 20 0 chr4 47861320 47861471 -154466876 + L1P5 LINE L1 5304 5457 -694 2371 53 6 35 chr4 47912567 47912885 -154415462 + AluY SINE Alu 1 309 -2 25 0 0 0 chr4 47912988 47913013 -154415334 + AT_rich Low_complexity Low_complexity 1 25 0 4189 161 25 3 chr4 47913944 47914650 -154413697 + MER50 LTR ERV1 1 722 -12 9774 196 46 16 chr4 47914650 47916440 -154411907 + MER50-int LTR ERV1 7 1849 -5356 * 11476 156 39 42 chr4 47916433 47919792 -154408555 + MER50-int LTR ERV1 2787 6200 -1005 2518 106 3 3 chr4 47919790 47920147 -154408200 + MER50-int LTR ERV1 6841 7197 -8 * 3527 136 62 67 chr4 47920147 47920854 -154407493 + MER50 LTR ERV1 1 704 -30 1590 200 82 58 chr4 47922132 47922583 -154405764 - MLT1C LTR MaLR 0 467 6 1559 169 13 55 chr4 47923037 47923345 -154405002 - AluJo SINE Alu -17 295 1 216 280 0 0 chr4 47923439 47923489 -154404858 + CT-rich Low_complexity Low_complexity 3 52 0 225 65 0 0 chr4 47923500 47923531 -154404816 + (CA)n Simple_repeat Simple_repeat 2 32 0 230 362 130 7 chr4 47924121 47924259 -154404088 + MIR SINE MIR 12 166 -96 672 84 0 37 chr4 47924307 47924437 -154403910 - AluSc SINE Alu 0 309 183 21 0 0 0 chr4 47924553 47924574 -154403773 + AT_rich Low_complexity Low_complexity 1 21 0 275 302 62 31 chr4 47925333 47925409 -154402938 - L2 LINE L2 -594 2720 2637 2623 207 18 4 chr4 47925409 47925922 -154402425 + MLT2B1 LTR ERVL 1 520 0 275 302 62 31 chr4 47925922 47925974 -154402373 - L2 LINE L2 -677 2637 2588 1908 240 15 43 chr4 47926594 47927128 -154401219 - LTR40a LTR ERVL 0 519 1 628 237 140 79 chr4 47927389 47927786 -154400561 - MLT1A1 LTR MaLR -2 403 4 1112 236 4 4 chr4 47928408 47928658 -154399689 + AluJo SINE Alu 4 253 -59 3574 189 42 4 chr4 47928758 47929519 -154398828 - L1 LINE L1 -1895 4953 4164 1712 314 21 74 chr4 47929534 47930492 -154397855 - L1 LINE L1 -5933 916 10 2464 133 57 0 chr4 47931692 47932097 -154396250 + MSTA LTR MaLR 1 428 0 8272 174 53 11 chr4 47932099 47933383 -154394964 + MSTA-int LTR MaLR 3 1367 -284 1443 127 45 0 chr4 47933383 47933603 -154394744 + MER30 DNA MER1_type 1 230 0 8272 174 53 11 chr4 47933603 47933901 -154394446 + MSTA-int LTR MaLR 1367 1651 0 2115 165 57 2 chr4 47933902 47934307 -154394040 + MSTA LTR MaLR 2 428 0 366 255 33 39 chr4 47935019 47935172 -154393175 + L1ME4a LINE L1 5934 6085 -36 204 143 71 0 chr4 47935950 47935992 -154392355 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 660 248 20 106 chr4 47937213 47937330 -154391017 + MIR SINE MIR 37 124 -138 1366 159 17 0 chr4 47937330 47937562 -154390785 - MER46A DNA MER2_type 0 236 1 660 248 20 106 chr4 47937562 47937690 -154390657 + MIR SINE MIR 124 261 -1 466 301 81 11 chr4 47937874 47938060 -154390287 - MIR SINE MIR -53 209 11 226 389 0 9 chr4 47938212 47938320 -154390027 + L2 LINE L2 3165 3271 -1 1333 177 4 31 chr4 47938637 47938891 -154389456 + AluSx SINE Alu 7 253 -59 242 93 47 0 chr4 47939070 47939113 -154389234 + AluSx SINE Alu 255 299 -1 255 170 0 0 chr4 47939628 47939675 -154388672 + (CA)n Simple_repeat Simple_repeat 1 47 0 463 270 196 0 chr4 47941914 47942077 -154386270 - MIR SINE MIR -36 226 32 337 334 183 22 chr4 47942127 47942590 -154385757 - L2 LINE L2 -172 3100 2549 460 314 244 22 chr4 47943539 47943997 -154384350 + L2 LINE L2 2049 2608 -706 253 342 92 8 chr4 47944442 47944562 -154383785 - MIR3 SINE MIR -74 134 5 241 284 12 12 chr4 47945460 47945541 -154382806 + MIR SINE MIR 96 176 -86 954 142 0 0 chr4 47947079 47947213 -154381134 + AluJo SINE Alu 1 134 -178 1549 184 29 56 chr4 47947228 47947603 -154380744 + MLT1A1 LTR MaLR 1 365 0 366 235 129 67 chr4 47947756 47947800 -154380547 + Charlie7 DNA MER1_type 41 81 -2531 1430 159 137 31 chr4 47947800 47948121 -154380226 - THE1A LTR MaLR 0 355 1 366 235 129 67 chr4 47948121 47948417 -154379930 + Charlie7 DNA MER1_type 81 402 -2210 322 320 44 19 chr4 47948743 47948949 -154379398 + L1MC/D LINE L1 5456 5666 -455 2472 66 0 3 chr4 47948974 47949278 -154379069 + AluY SINE Alu 1 303 -8 270 286 0 0 chr4 47949292 47949362 -154378985 + L1MC/D LINE L1 5737 5806 -2002 942 290 113 4 chr4 47949371 47949846 -154378501 + MLT1H1 LTR MaLR 7 595 0 2195 161 74 83 chr4 47951235 47951752 -154376595 - MER44D DNA MER2_type -1882 605 37 2346 168 26 5 chr4 47951752 47952175 -154376172 + MSTB1 LTR MaLR 1 432 0 2195 161 74 83 chr4 47952175 47952211 -154376136 - MER44D DNA MER2_type -2450 37 2 197 33 33 0 chr4 47952697 47952727 -154375620 + (TG)n Simple_repeat Simple_repeat 2 32 0 40724 72 3 2 chr4 47953805 47959465 -154368882 - L1P2 LINE L1 -488 5666 3 5796 126 27 4 chr4 47959802 47961516 -154366831 - L1PA10 LINE L1 -29 6139 4391 1702 220 49 63 chr4 47961916 47962241 -154366106 - MLT1D LTR MaLR 0 505 188 1625 117 0 0 chr4 47962241 47962464 -154365883 + AluSc SINE Alu 86 308 -1 1702 220 49 63 chr4 47962464 47962648 -154365699 - MLT1D LTR MaLR -317 188 3 252 266 0 25 chr4 47964415 47964494 -154363853 + L2 LINE L2 2399 2475 -839 603 208 15 15 chr4 47964511 47964641 -154363706 + MLT1H LTR MaLR 12 141 -408 41 0 0 0 chr4 47964641 47964682 -154363665 + AT_rich Low_complexity Low_complexity 1 41 0 3356 202 6 13 chr4 47964805 47965507 -154362840 - L1MB8 LINE L1 -1 6177 5481 25 51 0 0 chr4 47966205 47966244 -154362103 + AT_rich Low_complexity Low_complexity 1 39 0 411 255 78 116 chr4 47966766 47967225 -154361122 - MLT1J2 LTR MaLR -4 446 1 184 191 71 0 chr4 47967248 47967290 -154361057 - MIR SINE MIR -124 138 94 186 240 80 0 chr4 47967443 47967493 -154360854 + MIR SINE MIR 47 100 -162 206 326 206 16 chr4 47967512 47967696 -154360651 + MIR SINE MIR 44 262 0 260 306 139 0 chr4 47970037 47970181 -154358166 + MIR3 SINE MIR 42 205 -3 396 305 86 11 chr4 47970722 47970909 -154357438 + L1ME LINE L1 380 580 -5625 1258 267 69 81 chr4 47971222 47971756 -154356591 + L1ME LINE L1 782 1321 -5075 1354 191 24 60 chr4 47971756 47972054 -154356293 + AluJo SINE Alu 3 289 -23 1258 267 69 81 chr4 47972054 47972789 -154355558 + L1ME LINE L1 1321 2036 -4360 1964 218 89 103 chr4 47972994 47973429 -154354918 + L1MB4 LINE L1 2220 2660 -3486 258 111 0 0 chr4 47973429 47973465 -154354882 + U2 snRNA snRNA 1 36 -152 1964 218 89 103 chr4 47973465 47974149 -154354198 + L1MB4 LINE L1 2660 3360 -2786 328 308 8 0 chr4 47974276 47974396 -154353951 + L1MB4 LINE L1 4927 5047 -1099 1461 184 0 21 chr4 47975010 47975293 -154353054 + AluJo SINE Alu 35 311 -1 918 281 147 19 chr4 47975752 47976243 -154352104 - L2 LINE L2 -11 3302 2736 349 301 148 34 chr4 47976661 47976870 -154351477 + MIR SINE MIR 29 261 -1 2945 168 52 28 chr4 47977290 47977939 -154350408 + L1MB4 LINE L1 5515 6179 -1 519 312 58 31 chr4 47978681 47978829 -154349518 - L1ME4a LINE L1 -237 6382 6239 1958 148 27 51 chr4 47978829 47979202 -154349145 + THE1B LTR MaLR 1 364 0 519 312 58 31 chr4 47979202 47979571 -154348776 - L1ME4a LINE L1 -380 6239 5837 22 0 0 0 chr4 47979952 47979974 -154348373 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr4 47980269 47980302 -154348045 + (TG)n Simple_repeat Simple_repeat 2 34 0 7111 121 14 6 chr4 47980489 47982002 -154346345 - L1MA1 LINE L1 -2 6300 4777 1682 183 23 9 chr4 47982048 47982398 -154345949 - L1MA4 LINE L1 -7 6293 5939 705 280 62 12 chr4 47982949 47983252 -154345095 - L1ME3 LINE L1 -6 6158 5840 2080 200 65 15 chr4 47983254 47983734 -154344613 + LTR22 LTR ERVK 1 504 -5 4229 122 42 21 chr4 47983750 47984072 -154344275 + HERVK22 LTR ERVK 3 317 -6520 1881 107 89 0 chr4 47984072 47984353 -154343994 - AluY SINE Alu -5 306 1 4229 122 42 21 chr4 47984353 47984701 -154343646 + HERVK22 LTR ERVK 317 687 -6150 257 146 36 18 chr4 47984783 47984838 -154343509 - L1ME3 LINE L1 -352 5814 5759 * 7155 243 71 25 chr4 47984822 47985630 -154342717 - L1M4 LINE L1 -1456 5188 4419 846 219 166 53 chr4 47985630 47985986 -154342361 - MSTD LTR MaLR 0 396 1 7155 243 71 25 chr4 47985986 47987301 -154341046 - L1M4 LINE L1 -2225 4419 2934 241 26 53 0 chr4 47987301 47987339 -154341008 + (TA)n Simple_repeat Simple_repeat 1 40 0 7155 243 71 25 chr4 47987339 47988147 -154340200 - L1M4 LINE L1 -3710 2934 2165 3299 217 130 86 chr4 47988148 47988616 -154339731 - L1M4 LINE L1 -4690 1956 1510 2157 145 50 38 chr4 47988616 47988807 -154339540 + MSTA LTR MaLR 3 190 -238 1872 145 0 18 chr4 47988807 47989130 -154339217 + AluSc SINE Alu 1 318 0 2157 145 50 38 chr4 47989130 47989358 -154338989 + MSTA LTR MaLR 190 428 0 8480 185 36 2 chr4 47989358 47990950 -154337397 + MSTA-int LTR MaLR 1 1647 -4 2447 118 62 5 chr4 47990960 47991365 -154336982 + MSTA LTR MaLR 1 428 0 3299 217 130 86 chr4 47991365 47992651 -154335696 - L1M4 LINE L1 -5144 1502 46 423 380 0 16 chr4 47992682 47992869 -154335478 + L2 LINE L2 2617 2800 -514 830 315 74 33 chr4 47993402 47993793 -154334554 + HERV16 LTR ERVL 2112 2518 -2478 * 2313 340 83 54 chr4 47993778 47996163 -154332184 + HERV16 LTR ERVL 2667 5134 -630 1555 185 36 36 chr4 47996163 47996526 -154331821 + MLT1A1 LTR MaLR 3 365 0 2313 340 83 54 chr4 47996526 47996725 -154331622 + HERV16 LTR ERVL 5134 5326 -438 556 333 62 29 chr4 47996845 47997121 -154331226 + LTR16A LTR ERVL 79 363 -87 37 76 0 0 chr4 47998090 47998169 -154330178 + AT_rich Low_complexity Low_complexity 1 79 0 33 90 0 0 chr4 47998181 47998270 -154330077 + AT_rich Low_complexity Low_complexity 1 89 0 340 254 55 114 chr4 47998274 47998494 -154329853 - L1ME3A LINE L1 -2 6168 5962 687 205 36 20 chr4 47998529 47998744 -154329603 - L1ME3A LINE L1 -220 5950 5760 900 245 0 60 chr4 47998750 47999064 -154329283 - L1MA4 LINE L1 -3 6297 6003 1190 247 104 7 chr4 47999070 47999839 -154328508 - L1ME3A LINE L1 -405 5757 4917 418 251 61 32 chr4 48000021 48000268 -154328079 - L1ME3A LINE L1 -1594 4552 4299 5144 106 14 39 chr4 48000294 48001109 -154327238 - L1PA11 LINE L1 -21 7591 6798 477 94 35 0 chr4 48001109 48001194 -154327153 + (TA)n Simple_repeat Simple_repeat 2 89 0 18870 196 75 21 chr4 48001194 48003261 -154325086 - L1PA11 LINE L1 -792 6792 4838 2171 106 0 3 chr4 48003261 48003554 -154324793 - AluY SINE Alu -19 292 1 18870 196 75 21 chr4 48003554 48006634 -154321713 - L1PA11 LINE L1 -2746 4838 576 1807 80 4 17 chr4 48006734 48006972 -154321375 - AluSp SINE Alu -69 244 10 466 321 74 14 chr4 48008680 48008895 -154319452 - MIR SINE MIR -6 256 29 23 0 0 0 chr4 48009746 48009769 -154318578 + AT_rich Low_complexity Low_complexity 1 23 0 349 293 213 5 chr4 48010145 48010333 -154318014 - MIR SINE MIR -28 234 8 273 350 20 20 chr4 48010712 48010812 -154317535 - MIR SINE MIR -93 115 16 22 0 0 0 chr4 48011808 48011830 -154316517 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 48012226 48012247 -154316100 + AT_rich Low_complexity Low_complexity 1 21 0 532 293 86 10 chr4 48012869 48013067 -154315280 - MIR SINE MIR -24 238 26 189 0 0 0 chr4 48013104 48013125 -154315222 + (CAAAG)n Simple_repeat Simple_repeat 2 22 0 208 310 92 23 chr4 48014007 48014094 -154314253 - MIR SINE MIR -59 203 111 25 65 0 0 chr4 48014326 48014372 -154313975 + AT_rich Low_complexity Low_complexity 1 46 0 1935 144 35 3 chr4 48015195 48015514 -154312833 - MER2 DNA MER2_type -16 329 1 423 246 153 0 chr4 48015521 48015639 -154312708 - MIR SINE MIR -74 188 53 670 274 30 4 chr4 48015682 48015912 -154312435 - HAL1b LINE L1 -264 1084 849 3089 160 54 42 chr4 48015948 48016375 -154311972 - L1MA4 LINE L1 0 6300 5730 3945 92 48 30 chr4 48016375 48017004 -154311343 - MER51C LTR ERV1 0 640 1 3089 160 54 42 chr4 48017004 48017220 -154311127 - L1MA4 LINE L1 -570 5730 5518 308 226 23 60 chr4 48017218 48017351 -154310996 - HAL1b LINE L1 -568 780 653 * 253 313 45 0 chr4 48017820 48017887 -154310460 - L2 LINE L2 -9 3263 3194 349 281 13 65 chr4 48018078 48018231 -154310116 + MER5A DNA MER1_type 40 184 -5 254 333 0 24 chr4 48018623 48018707 -154309640 - MIR3 SINE MIR -116 92 11 276 301 81 15 chr4 48019692 48019828 -154308519 - MER90 LTR ERV1 -69 545 401 788 213 25 35 chr4 48020011 48020208 -154308139 - LTR65 LTR ERV1 -273 396 202 759 160 0 0 chr4 48020274 48020399 -154307948 + FLAM_C SINE Alu 1 125 -18 6195 138 51 28 chr4 48020571 48020888 -154307459 + Tigger3b DNA MER2_type 1 309 -2719 2191 109 3 6 chr4 48020888 48021199 -154307148 - AluSg SINE Alu 0 310 1 6195 138 51 28 chr4 48021199 48021563 -154306784 + Tigger3b DNA MER2_type 309 663 -2365 2120 115 0 0 chr4 48021563 48021858 -154306489 - AluY SINE Alu -16 295 1 6195 138 51 28 chr4 48021858 48022379 -154305968 + Tigger3b DNA MER2_type 663 1231 0 1151 247 55 68 chr4 48022485 48022999 -154305348 - L1M4 LINE L1 -2196 3950 3444 3998 182 62 20 chr4 48023007 48024032 -154304315 - L1MB7 LINE L1 -16 6666 5599 773 136 88 0 chr4 48024049 48024196 -154304151 + MER5C DNA MER1_type 165 324 0 3662 236 63 119 chr4 48024391 48025126 -154303221 - L1MB7 LINE L1 -1072 5572 4797 4632 119 25 4 chr4 48025126 48025841 -154302506 + L1PA16 LINE L1 5427 6156 -10 3662 236 63 119 chr4 48025841 48026117 -154302230 - L1MB7 LINE L1 -1847 4797 4507 264 30 0 0 chr4 48026117 48026150 -154302197 + (TG)n Simple_repeat Simple_repeat 2 34 0 3662 236 63 119 chr4 48026150 48027254 -154301093 - L1MB7 LINE L1 -2137 4507 3575 2522 239 119 29 chr4 48027262 48027284 -154301063 - L1MB7 LINE L1 -5575 967 948 234 0 0 0 chr4 48027284 48027310 -154301037 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2522 239 119 29 chr4 48027310 48027457 -154300890 - L1MB7 LINE L1 -5594 948 816 276 30 0 0 chr4 48027457 48027490 -154300857 + (TG)n Simple_repeat Simple_repeat 2 34 0 2522 239 119 29 chr4 48027490 48028151 -154300196 - L1MB7 LINE L1 -5726 816 61 2944 259 21 38 chr4 48028159 48029107 -154299240 - L1MEc LINE L1 -5419 977 46 23 0 0 0 chr4 48030346 48030369 -154297978 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 48030651 48030681 -154297666 + AT_rich Low_complexity Low_complexity 1 30 0 289 352 22 0 chr4 48031372 48031463 -154296884 + L2 LINE L2 3199 3291 -22 373 339 210 10 chr4 48032293 48032807 -154295540 + L2 LINE L2 1884 2500 -814 411 299 67 41 chr4 48032924 48033118 -154295229 + MLT1L LTR MaLR 172 370 -245 2571 197 38 2 chr4 48033185 48033687 -154294660 + MLT2B1 LTR ERVL 1 520 0 402 347 39 53 chr4 48033779 48034116 -154294231 + L2 LINE L2 2516 2847 -467 198 219 31 62 chr4 48034424 48034488 -154293859 + L2 LINE L2 2916 2977 -336 894 287 31 46 chr4 48034697 48035021 -154293326 - LTR40a LTR ERVL -118 401 83 1831 292 138 10 chr4 48035072 48035823 -154292524 + L2 LINE L2 2202 3037 -276 272 235 12 59 chr4 48035849 48035934 -154292413 + L2 LINE L2 2288 2368 -946 233 298 0 0 chr4 48035934 48035991 -154292356 + L2 LINE L2 3257 3313 0 451 267 133 24 chr4 48036002 48036167 -154292180 + MIR SINE MIR 60 242 -20 33 43 0 0 chr4 48036242 48036289 -154292058 + AT_rich Low_complexity Low_complexity 1 47 0 1033 151 0 24 chr4 48036375 48036541 -154291806 + FRAM SINE Alu 1 161 -15 303 288 127 8 chr4 48036553 48036671 -154291676 - MIR SINE MIR -45 217 86 2741 62 3 0 chr4 48036697 48037050 -154291297 - L1PA5 LINE L1 0 6154 5801 330 279 0 0 chr4 48037396 48037464 -154290883 + L2 LINE L2 3205 3272 0 23 54 0 0 chr4 48037655 48037692 -154290655 + AT_rich Low_complexity Low_complexity 1 37 0 21 71 0 0 chr4 48038018 48038060 -154290287 + AT_rich Low_complexity Low_complexity 1 42 0 1548 257 67 60 chr4 48038341 48038892 -154289455 + MLT1E LTR MaLR 1 550 -40 324 344 16 0 chr4 48039323 48039448 -154288899 + MIR3 SINE MIR 53 179 -29 21 0 0 0 chr4 48039486 48039507 -154288840 + AT_rich Low_complexity Low_complexity 1 21 0 704 234 0 14 chr4 48040625 48040770 -154287577 - FRAM SINE Alu -30 146 4 22 35 0 0 chr4 48040902 48040931 -154287416 + AT_rich Low_complexity Low_complexity 1 29 0 715 284 57 18 chr4 48042045 48042274 -154286073 + MIR SINE MIR 14 251 -11 311 324 0 0 chr4 48042482 48042556 -154285791 + L2 LINE L2 3234 3307 -6 1974 147 22 46 chr4 48042572 48042940 -154285407 + THE1C LTR MaLR 17 375 0 434 269 19 50 chr4 48042992 48043152 -154285195 - MLT1G1 LTR MaLR 0 595 441 226 175 53 0 chr4 48043163 48043220 -154285127 - MLT1G1 LTR MaLR -202 328 269 2026 221 63 20 chr4 48043236 48043747 -154284600 + MLT1E2 LTR MaLR 94 626 0 1789 182 80 42 chr4 48044074 48044524 -154283823 + MLT1C LTR MaLR 1 467 0 2320 166 53 30 chr4 48044534 48045040 -154283307 + MLT1C-int LTR MaLR 14 531 -840 719 222 6 54 chr4 48045040 48045220 -154283127 + MLT2C2 LTR ERVL 231 349 -48 191 217 17 0 chr4 48045256 48045316 -154283031 + (TA)n Simple_repeat Simple_repeat 2 62 0 417 195 73 0 chr4 48045771 48045853 -154282494 + MER67B LTR ERV1 109 196 -465 340 203 259 25 chr4 48045848 48046084 -154282263 - MER113 DNA MER1_type? -159 362 72 * 350 242 53 0 chr4 48046096 48046191 -154282156 + MER67A LTR ERV1 1 100 -443 423 178 0 0 chr4 48046226 48046306 -154282041 + MER67A LTR ERV1 34 141 -402 238 314 204 0 chr4 48046309 48046446 -154281901 + L2 LINE L2 2452 2616 -698 2305 60 3 0 chr4 48046460 48046745 -154281602 - AluY SINE Alu -25 286 1 1986 168 39 21 chr4 48047360 48047741 -154280606 + MLT1B LTR MaLR 1 388 -2 528 332 59 21 chr4 48048014 48048252 -154280095 + MIR SINE MIR 13 259 -3 555 248 110 8 chr4 48048628 48049015 -154279332 - MER113 DNA MER1_type? -4 517 53 414 165 99 0 chr4 48049015 48049089 -154279258 + MER67A LTR ERV1 1 83 -460 1780 203 70 51 chr4 48049089 48049602 -154278745 + MER67A LTR ERV1 1 543 0 2204 95 0 0 chr4 48049774 48050070 -154278277 + AluSg SINE Alu 1 296 -14 182 352 112 0 chr4 48050625 48050821 -154277526 + MIR SINE MIR 29 246 -16 233 198 198 10 chr4 48051429 48051525 -154276822 + MIR SINE MIR 21 134 -128 226 294 44 0 chr4 48051551 48051619 -154276728 - MIR SINE MIR -35 227 157 199 240 80 13 chr4 48051651 48051726 -154276621 + MIR SINE MIR 67 146 -116 182 294 0 127 chr4 48053157 48053283 -154275064 - L2 LINE L2 -1605 1709 1600 277 331 105 24 chr4 48054378 48054502 -154273845 + L2 LINE L2 3134 3267 -5 23 54 0 0 chr4 48055313 48055350 -154272997 + AT_rich Low_complexity Low_complexity 1 37 0 321 303 31 55 chr4 48055956 48056163 -154272184 - MIR3 SINE MIR -56 206 3 290 364 165 0 chr4 48056837 48057155 -154271192 - L2 LINE L2 -301 2971 2585 390 362 105 20 chr4 48057391 48057688 -154270659 - L2 LINE L2 -2098 1216 875 995 171 62 24 chr4 48057688 48057898 -154270449 + MER20 DNA MER1_type 1 218 -1 390 362 105 20 chr4 48057898 48058001 -154270346 - L2 LINE L2 -2439 875 782 229 264 55 45 chr4 48058054 48058164 -154270183 - MIR SINE MIR -45 217 107 21 36 0 0 chr4 48058864 48058892 -154269455 + AT_rich Low_complexity Low_complexity 1 28 0 21 95 0 0 chr4 48058957 48059020 -154269327 + AT_rich Low_complexity Low_complexity 1 63 0 227 200 0 0 chr4 48059708 48059748 -154268599 - L2 LINE L2 -12 3301 3262 196 310 80 26 chr4 48059753 48059866 -154268481 + MIR3 SINE MIR 84 202 -6 21 0 0 0 chr4 48061973 48061994 -154266353 + AT_rich Low_complexity Low_complexity 1 21 0 205 195 0 0 chr4 48063494 48063535 -154264812 + (TA)n Simple_repeat Simple_repeat 1 41 0 28 29 0 0 chr4 48063536 48063571 -154264776 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr4 48064923 48064944 -154263403 + (TTG)n Simple_repeat Simple_repeat 1 21 0 207 351 15 84 chr4 48065898 48066029 -154262318 + L2 LINE L2 3150 3271 -1 518 187 0 11 chr4 48066352 48066443 -154261904 - MIR SINE MIR -18 244 155 183 42 0 0 chr4 48067316 48067340 -154261007 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2199 71 4 0 chr4 48067346 48067615 -154260732 - AluSc SINE Alu -35 274 5 242 248 116 16 chr4 48067638 48067759 -154260588 + L1ME LINE L1 5725 5857 -264 463 221 115 9 chr4 48068832 48068945 -154259402 + FLAM_A SINE Alu 1 125 -17 30 27 0 0 chr4 48070154 48070191 -154258156 + AT_rich Low_complexity Low_complexity 1 37 0 1849 149 7 3 chr4 48070384 48070672 -154257675 + AluSx SINE Alu 7 295 -17 744 248 98 14 chr4 48071338 48071552 -154256795 + MIR SINE MIR 14 245 -17 672 176 93 69 chr4 48071560 48071707 -154256640 + MER6B DNA MER2_type 1 156 -709 2033 97 49 3 chr4 48071707 48071995 -154256352 - AluSg SINE Alu -9 301 1 672 176 93 69 chr4 48071995 48072051 -154256296 + MER6B DNA MER2_type 156 209 -1 2719 124 115 51 chr4 48072665 48073229 -154255118 + MER4A LTR ERV1 1 600 0 22 0 0 0 chr4 48077159 48077181 -154251166 + AT_rich Low_complexity Low_complexity 1 22 0 600 294 39 35 chr4 48078213 48078444 -154249903 + MIR SINE MIR 2 233 -29 386 201 186 41 chr4 48078787 48078981 -154249366 + L1ME4a LINE L1 5712 5933 -188 322 210 0 0 chr4 48078993 48079055 -154249292 + MER113 DNA MER1_type? 1 62 -459 467 233 67 0 chr4 48079116 48079236 -154249111 - MER104 DNA Tc2 -3 177 50 472 276 177 0 chr4 48081353 48081534 -154246813 - MIR SINE MIR -38 224 12 236 175 0 0 chr4 48081986 48082026 -154246321 + MER5A DNA MER1_type 150 189 0 906 193 46 69 chr4 48082248 48082466 -154245881 + AluJb SINE Alu 81 293 -19 300 342 59 26 chr4 48083968 48084120 -154244227 - MIR3 SINE MIR -46 162 6 224 256 0 49 chr4 48084145 48084227 -154244120 + MIR3 SINE MIR 94 171 -37 641 236 65 41 chr4 48084241 48084297 -154244050 + MER112 DNA MER1_type 8 61 -199 210 71 0 0 chr4 48084297 48084325 -154244022 + (TA)n Simple_repeat Simple_repeat 1 28 0 641 236 65 41 chr4 48084325 48084514 -154243833 + MER112 DNA MER1_type 61 259 -1 22 0 0 0 chr4 48085016 48085038 -154243309 + AT_rich Low_complexity Low_complexity 1 22 0 194 359 13 26 chr4 48085335 48085413 -154242934 + L2 LINE L2 2977 3053 -219 492 251 89 94 chr4 48135426 48135661 -154192686 - MIR SINE MIR -27 235 2 1762 261 41 32 chr4 48135790 48136274 -154192073 - MLT1F LTR MaLR 0 542 51 1970 187 3 14 chr4 48136274 48136643 -154191704 - MLT1A1 LTR MaLR 0 365 1 1762 261 41 32 chr4 48136643 48136695 -154191652 - MLT1F LTR MaLR -491 51 1 6663 144 17 2 chr4 48136877 48138349 -154189998 + L1MA2 LINE L1 4807 6304 0 312 222 30 11 chr4 48138378 48138492 -154189855 + L1MC4 LINE L1 7880 8038 -1 26 0 0 0 chr4 48138659 48138685 -154189662 + AT_rich Low_complexity Low_complexity 1 26 0 272 93 0 19 chr4 48138685 48138739 -154189608 + (TTTTTA)n Simple_repeat Simple_repeat 3 55 0 1032 207 19 9 chr4 48138874 48139087 -154189260 + MER20 DNA MER1_type 1 215 -4 9039 182 38 33 chr4 48139248 48141257 -154187090 - L1 LINE L1 -1635 5930 3933 227 136 0 0 chr4 48141257 48141301 -154187046 + LTR66 LTR ERVL 395 438 -172 9039 182 38 33 chr4 48141301 48141870 -154186477 - L1 LINE L1 -3632 3933 3368 2523 47 0 0 chr4 48141870 48142169 -154186178 + AluY SINE Alu 1 299 -12 9039 182 38 33 chr4 48142169 48142690 -154185657 - L1 LINE L1 -4197 3368 2771 9883 209 27 59 chr4 48142791 48146614 -154181733 - L1PA16 LINE L1 -177 5989 2299 410 372 94 47 chr4 48147750 48148132 -154180215 - L2 LINE L2 -3 3269 2870 259 211 0 0 chr4 48149882 48149934 -154178413 - L2 LINE L2 -5 3308 3257 2372 24 48 10 chr4 48149953 48150247 -154178100 + AluY SINE Alu 1 305 -6 604 196 35 7 chr4 48150415 48150558 -154177789 - L1MA10 LINE L1 -8 6326 6180 744 281 71 10 chr4 48150600 48150964 -154177383 - L1ME1 LINE L1 -163 6070 5669 228 35 0 0 chr4 48150973 48151002 -154177345 + (TA)n Simple_repeat Simple_repeat 2 30 0 1142 227 32 41 chr4 48151014 48151055 -154177292 - L1ME1 LINE L1 -581 5650 5610 1651 139 73 21 chr4 48151055 48151343 -154177004 - AluSq SINE Alu -6 307 5 1142 227 32 41 chr4 48151343 48151887 -154176460 - L1ME1 LINE L1 -621 5610 5095 362 355 152 12 chr4 48152636 48152971 -154175376 + L2 LINE L2 2860 3241 -31 188 314 14 0 chr4 48152990 48153060 -154175287 + MIR SINE MIR 90 160 -102 381 251 34 17 chr4 48153352 48153555 -154174792 - HAL1b LINE L1 -119 2388 797 752 327 65 22 chr4 48154249 48154756 -154173591 - HAL1 LINE L1 -749 1758 1230 225 239 23 11 chr4 48154775 48154863 -154173484 + (TTTA)n Simple_repeat Simple_repeat 4 92 0 361 241 85 18 chr4 48158120 48158231 -154170116 - FLAM_A SINE Alu -28 105 2 2383 68 0 34 chr4 48159256 48159578 -154168769 + AluY SINE Alu 1 311 0 684 297 156 3 chr4 48160581 48160971 -154167376 + LTR16A LTR ERVL 1 450 0 895 210 118 32 chr4 48161506 48161834 -154166513 - MLT1A1 LTR MaLR 0 396 3 231 227 45 15 chr4 48162957 48163023 -154165324 - LTR33A LTR ERVL -8 515 448 1463 236 41 6 chr4 48163753 48164219 -154164128 - L1ME1 LINE L1 -1428 4787 4306 3064 256 64 51 chr4 48164230 48166618 -154161729 - L1ME1 LINE L1 -2005 4210 32 2284 90 0 3 chr4 48167738 48168049 -154160298 - AluY SINE Alu 0 311 2 3792 182 3 3 chr4 48168076 48168735 -154159612 + L1PA16 LINE L1 5484 6142 -24 295 321 150 35 chr4 48169128 48169495 -154158852 - LTR33 LTR ERVL -112 409 1 392 297 10 0 chr4 48169721 48169822 -154158525 + MER81 DNA DNA 12 113 -1 600 176 8 15 chr4 48170044 48170175 -154158172 - L1 LINE L1 -873 5273 5144 2267 118 8 35 chr4 48170177 48170551 -154157796 + THE1B LTR MaLR 1 364 0 11279 104 1 0 chr4 48170551 48172129 -154156218 + THE1B-int LTR MaLR 1 1580 0 2418 109 5 35 chr4 48172129 48172504 -154155843 + THE1B LTR MaLR 1 364 0 5791 180 7 6 chr4 48172509 48173653 -154154694 - L1 LINE L1 -1005 5141 3997 1927 171 8 13 chr4 48173653 48174031 -154154316 + L1MA4 LINE L1 5921 6297 -3 317 311 89 0 chr4 48175320 48175455 -154152892 + L3 LINE CR1 1229 1375 -202 1741 71 0 0 chr4 48175628 48175838 -154152509 - AluY SINE Alu -14 297 88 340 235 15 0 chr4 48178226 48178294 -154150053 + MIR SINE MIR 7 75 -187 536 258 57 48 chr4 48178381 48178590 -154149757 + MIR SINE MIR 52 262 0 205 258 16 0 chr4 48178593 48178655 -154149692 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 417 309 159 23 chr4 48178820 48179040 -154149307 - MIR SINE MIR -2 260 11 1256 78 0 0 chr4 48179843 48180009 -154148338 - AluY SINE Alu 0 311 146 199 254 45 15 chr4 48180643 48180710 -154147637 + MIR3 SINE MIR 125 193 -15 1123 171 47 33 chr4 48181772 48181983 -154146364 - MER20 DNA MER1_type 0 219 6 329 194 9 111 chr4 48182322 48182430 -154145917 - MLT1F-int LTR MaLR -1269 102 6 1426 260 79 37 chr4 48182439 48182893 -154145454 - MLT1F LTR MaLR -4 538 66 1636 133 60 38 chr4 48182995 48183310 -154145037 + THE1C LTR MaLR 54 375 0 1008 242 112 9 chr4 48183310 48183641 -154144706 - L1 LINE L1 -3139 3007 2643 356 260 133 54 chr4 48184039 48184408 -154143939 + L1ME4a LINE L1 5721 6118 -3 29 0 0 0 chr4 48184827 48184856 -154143491 + AT_rich Low_complexity Low_complexity 1 29 0 218 305 42 68 chr4 48185114 48185232 -154143115 - L2 LINE L2 -263 3050 2936 192 97 0 0 chr4 48187003 48187034 -154141313 + (TTTTTG)n Simple_repeat Simple_repeat 1 31 0 777 276 51 0 chr4 48189074 48189288 -154139059 + MIR SINE MIR 4 228 -34 2212 230 77 35 chr4 48189408 48190044 -154138303 + L1MD2 LINE L1 5696 6358 -1 205 186 51 0 chr4 48190139 48190198 -154138149 + A-rich Low_complexity Low_complexity 5 66 0 417 20 0 0 chr4 48190307 48190357 -154137990 + (TG)n Simple_repeat Simple_repeat 2 51 0 741 211 0 14 chr4 48191611 48191758 -154136589 + MLT2C1 LTR ERVL 251 395 -2 23 33 0 0 chr4 48193380 48193410 -154134937 + AT_rich Low_complexity Low_complexity 1 30 0 217 279 25 0 chr4 48193607 48193686 -154134661 + (TA)n Simple_repeat Simple_repeat 2 82 0 672 351 86 5 chr4 48195772 48196205 -154132142 - L1MC4a LINE L1 -1903 5905 5438 2625 104 3 26 chr4 48197173 48197557 -154130790 + THE1C LTR MaLR 1 375 0 536 294 118 25 chr4 48198452 48198962 -154129385 - L1ME4a LINE L1 -1 6120 5564 364 176 28 50 chr4 48199129 48199311 -154129036 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 286 312 129 18 chr4 48200146 48200316 -154128031 + L2 LINE L2 2224 2412 -902 297 326 0 0 chr4 48202191 48202280 -154126067 - MIR SINE MIR -3 259 171 300 250 91 0 chr4 48203005 48203093 -154125254 - L2 LINE L2 -1 3271 3176 191 200 0 25 chr4 48203341 48203381 -154124966 - L2 LINE L2 -606 2708 2670 745 309 193 15 chr4 48203730 48204333 -154124014 - L2 LINE L2 0 3313 2593 755 332 84 22 chr4 48204493 48204848 -154123499 - L2 LINE L2 -2725 589 213 310 341 23 16 chr4 48204851 48204980 -154123367 + MER94 DNA DNA 5 134 0 491 309 13 0 chr4 48204983 48205135 -154123212 - L2 LINE L2 -3113 201 48 354 246 134 58 chr4 48205131 48205302 -154123045 - L2 LINE L2 -235 3037 2854 * 458 306 141 21 chr4 48208281 48208523 -154119824 + Charlie8 DNA MER1_type 1 271 -2146 28 0 0 0 chr4 48208739 48208767 -154119580 + AT_rich Low_complexity Low_complexity 1 28 0 210 250 39 0 chr4 48208802 48208854 -154119493 + GA-rich Low_complexity Low_complexity 2 55 0 307 286 149 83 chr4 48209298 48209634 -154118713 + L3 LINE CR1 337 694 -883 301 289 19 109 chr4 48209813 48209903 -154118444 + L3 LINE CR1 928 1000 -577 484 326 53 0 chr4 48209903 48210090 -154118257 + MER117 DNA MER1_type 1 197 0 301 289 19 109 chr4 48210090 48210155 -154118192 + L3 LINE CR1 1000 1069 -508 387 127 0 0 chr4 48210208 48210271 -154118076 - L1P5 LINE L1 -619 5537 5475 1589 127 0 0 chr4 48210620 48210873 -154117474 - L1MA2 LINE L1 0 6304 6052 1034 209 43 0 chr4 48210939 48211149 -154117198 + MER20 DNA MER1_type 1 219 0 195 241 35 35 chr4 48211274 48211332 -154117015 - L3 LINE CR1 -283 1294 1237 228 322 81 57 chr4 48211347 48211558 -154116789 + MIR SINE MIR 21 236 -26 556 250 67 17 chr4 48212578 48212786 -154115561 + MIR SINE MIR 12 235 -27 309 213 50 0 chr4 48214331 48214411 -154113936 - L1MCa LINE L1 -4362 2064 1981 314 200 14 14 chr4 48215232 48215302 -154113045 - MIR SINE MIR -21 241 172 216 0 0 0 chr4 48215314 48215338 -154113009 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1839 18 9 4 chr4 48215371 48215596 -154112751 - L1PA2 LINE L1 -2 6153 5928 1759 70 7 12 chr4 48215596 48215864 -154112483 + L1HS LINE L1 5744 5942 -213 319 226 0 0 chr4 48216387 48216449 -154111898 + MER116 DNA Mariner 18 79 -1 201 290 80 80 chr4 48216975 48217175 -154111172 - L2 LINE L2 -219 3053 2854 279 294 72 57 chr4 48218236 48218430 -154109917 - L2 LINE L2 -10 3303 3107 49 52 0 0 chr4 48219408 48219485 -154108862 + AT_rich Low_complexity Low_complexity 1 77 0 1869 223 49 25 chr4 48220277 48220766 -154107581 + MLT1D LTR MaLR 5 505 0 187 316 154 17 chr4 48220779 48220896 -154107451 - MIR SINE MIR -46 216 84 585 300 40 18 chr4 48221193 48221416 -154106931 - L2 LINE L2 0 3313 3086 359 285 34 106 chr4 48221568 48221775 -154106572 - L2 LINE L2 -225 3088 2897 22 35 0 0 chr4 48221802 48221831 -154106516 + AT_rich Low_complexity Low_complexity 1 29 0 1653 217 16 27 chr4 48221962 48222331 -154106016 - MLT1A1 LTR MaLR 0 365 1 1051 282 11 57 chr4 48222982 48223478 -154104869 - L1PA13 LINE L1 -4973 2601 2182 372 343 29 69 chr4 48224143 48224318 -154104029 - L1M2 LINE L1 -5902 947 780 1204 351 19 19 chr4 48224329 48224915 -154103432 - L1PA13 LINE L1 -6200 1374 789 260 161 36 0 chr4 48225514 48225570 -154102777 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 2014 153 100 8 chr4 48225597 48225988 -154102359 + MSTA LTR MaLR 1 427 -1 185 304 0 0 chr4 48227331 48227377 -154100970 + L2 LINE L2 2928 2973 -341 618 228 89 33 chr4 48227964 48228144 -154100203 - MIR SINE MIR -33 229 40 203 324 102 37 chr4 48228164 48228272 -154100075 + L2 LINE L2 3184 3298 -15 333 314 100 14 chr4 48228556 48228696 -154099651 + MIR3 SINE MIR 32 183 -25 277 136 23 0 chr4 48228760 48228804 -154099543 - L2 LINE L2 -2 3311 3267 41 72 0 0 chr4 48229599 48229682 -154098665 + AT_rich Low_complexity Low_complexity 1 83 0 556 270 27 7 chr4 48230370 48230518 -154097829 + MIR SINE MIR 1 151 -111 689 261 60 5 chr4 48230522 48230721 -154097626 - MIR SINE MIR -2 260 51 247 274 0 0 chr4 48232191 48232242 -154096105 + MIR SINE MIR 27 77 -185 1950 244 98 37 chr4 48232242 48232923 -154095424 - MER50 LTR ERV1 0 734 12 325 229 0 190 chr4 48232944 48232995 -154095352 + MIR SINE MIR 92 151 -111 883 83 0 0 chr4 48232995 48233115 -154095232 + L1MA2 LINE L1 6184 6303 -1 325 229 0 190 chr4 48233115 48233242 -154095105 + MIR SINE MIR 151 236 -26 43970 42 2 0 chr4 48233465 48239603 -154088744 + L1PA4 LINE L1 3 6152 -3 217 353 8 68 chr4 48239620 48239753 -154088594 - L2 LINE L2 -7 3306 3182 686 34 0 0 chr4 48240157 48240245 -154088102 - L1M1 LINE L1 -4839 2726 2639 682 207 215 21 chr4 48240305 48240542 -154087805 - L1MC4 LINE L1 -188 7854 7572 1144 212 69 101 chr4 48240552 48240929 -154087418 + MLT1B LTR MaLR 11 375 -15 246 111 0 0 chr4 48240948 48240984 -154087363 - L1MC4 LINE L1 -466 7576 7541 464 296 31 6 chr4 48241026 48241188 -154087159 - L2 LINE L2 -680 2634 2469 245 289 226 26 chr4 48241389 48241579 -154086768 - MARNA DNA Mariner -222 364 137 13624 134 38 38 chr4 48242102 48243156 -154085191 + Tigger1 DNA MER2_type 1 1054 -1364 801 85 93 16 chr4 48243156 48243285 -154085062 + MER85 DNA T2_type 1 139 0 13624 134 38 38 chr4 48243285 48244650 -154083697 + Tigger1 DNA MER2_type 1054 2418 0 306 291 48 10 chr4 48244659 48244762 -154083585 - L2 LINE L2 -42 3271 3165 27 62 0 0 chr4 48244767 48244815 -154083532 + AT_rich Low_complexity Low_complexity 1 48 0 23 33 0 0 chr4 48246443 48246473 -154081874 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr4 48246675 48246699 -154081648 + AT_rich Low_complexity Low_complexity 1 24 0 2084 119 0 3 chr4 48247853 48248146 -154080201 - AluSx SINE Alu -20 292 1 335 209 38 38 chr4 48248745 48248850 -154079497 + L1MA4 LINE L1 5981 6085 -215 761 296 111 33 chr4 48249031 48249429 -154078918 + MLT1J2 LTR MaLR 3 431 -19 16124 195 89 101 chr4 48251804 48252566 -154075781 - L1PA16 LINE L1 -9 6860 6091 2437 50 26 0 chr4 48252566 48252869 -154075478 - AluY SINE Alu 0 311 1 16124 195 89 101 chr4 48252869 48254166 -154074181 - L1PA16 LINE L1 -778 6091 4780 2444 153 98 14 chr4 48254166 48254605 -154073742 + MER61D LTR ERV1 26 501 0 16124 195 89 101 chr4 48254605 48259036 -154069311 - L1PA16 LINE L1 -2089 4780 5 355 222 19 49 chr4 48259326 48259488 -154068859 - MER113 DNA MER1_type? -282 239 83 553 220 160 64 chr4 48259771 48260084 -154068263 - MER52A LTR ERV1 -2 1230 292 315 98 0 0 chr4 48260168 48260209 -154068138 - LTR3b LTR ERVK 0 500 460 3408 121 16 2 chr4 48260210 48260699 -154067648 - LTR3b LTR ERVK -4 496 1 243 88 0 0 chr4 48261752 48261786 -154066561 + (CA)n Simple_repeat Simple_repeat 1 34 0 482 279 75 12 chr4 48263040 48263201 -154065146 - MIR SINE MIR -2 260 90 1580 180 24 14 chr4 48263609 48263903 -154064444 - AluJo SINE Alu -15 297 1 206 265 44 29 chr4 48265060 48265128 -154063219 - L2 LINE L2 -1 3271 3203 21 0 0 0 chr4 48265396 48265417 -154062930 + AT_rich Low_complexity Low_complexity 1 21 0 378 93 0 0 chr4 48265480 48265534 -154062813 - MLT2B1 LTR ERVL 0 520 467 230 120 120 0 chr4 48265571 48265621 -154062726 - MLT2B1 LTR ERVL -45 475 420 367 127 42 0 chr4 48265635 48265753 -154062594 + (TA)n Simple_repeat Simple_repeat 1 123 0 231 88 0 0 chr4 48265753 48265787 -154062560 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2555 179 25 5 chr4 48265791 48266238 -154062109 - MLT2B1 LTR ERVL -64 456 1 228 35 0 0 chr4 48266694 48266723 -154061624 + (TG)n Simple_repeat Simple_repeat 1 29 0 456 270 49 54 chr4 48266772 48266976 -154061371 - MLT1K LTR MaLR -1 587 385 854 248 87 6 chr4 48267863 48268186 -154060161 - L1MC4 LINE L1 -160 7882 7534 227 204 136 19 chr4 48268210 48268313 -154060034 - L1MC4a LINE L1 -558 7250 7136 2912 61 70 70 chr4 48269103 48269503 -154058844 + MLT2A1 LTR ERVL 1 403 -41 387 0 0 0 chr4 48269503 48269546 -154058801 + (CA)n Simple_repeat Simple_repeat 2 44 0 2912 61 70 70 chr4 48269546 48269589 -154058758 + MLT2A1 LTR ERVL 402 444 0 237 305 152 0 chr4 48270251 48270356 -154057991 + L2 LINE L2 3177 3297 -16 10030 23 0 0 chr4 48270506 48271680 -154056667 - L1PA2 LINE L1 -1260 4886 3713 7874 14 0 0 chr4 48271680 48272965 -154055382 + L1PA2 LINE L1 4871 6155 0 392 258 61 30 chr4 48274325 48274457 -154053890 - MER20 DNA MER1_type -23 196 61 2159 138 119 13 chr4 48375099 48375484 -153952863 + MSTA LTR MaLR 3 428 0 8249 161 19 34 chr4 48375486 48377087 -153951260 + MSTA-int LTR MaLR 3 1580 0 1880 157 121 21 chr4 48377087 48377476 -153950871 + MSTA LTR MaLR 1 428 0 3132 191 90 104 chr4 48377968 48378569 -153949778 - L1MC3 LINE L1 -1 7784 7125 249 282 0 13 chr4 48378569 48378647 -153949700 - MLT1F1 LTR MaLR -443 124 48 3132 191 90 104 chr4 48378647 48379033 -153949314 - L1MC3 LINE L1 -660 7125 6735 1880 173 116 10 chr4 48379584 48379971 -153948376 - MSTA LTR MaLR 0 428 1 2317 197 30 6 chr4 48380364 48380872 -153947475 - L1MB7 LINE L1 -15 6169 5650 453 97 42 0 chr4 48381353 48381425 -153946922 - L1P4 LINE L1 -683 5483 5409 * 1657 181 13 3 chr4 48381420 48381724 -153946623 + L1PA16 LINE L1 5756 6062 -104 391 254 18 0 chr4 48382427 48382537 -153945810 - MER94 DNA DNA -19 115 4 27 49 0 0 chr4 48382554 48382595 -153945752 + AT_rich Low_complexity Low_complexity 1 41 0 351 0 0 0 chr4 48382644 48382683 -153945664 + (CA)n Simple_repeat Simple_repeat 2 40 0 2826 164 3 23 chr4 48383186 48384061 -153944286 + L1PA15 LINE L1 4795 5651 -514 2142 159 43 22 chr4 48384061 48384477 -153943870 - MSTB LTR MaLR 0 426 2 5236 192 11 12 chr4 48384489 48385453 -153942894 - MSTB-int LTR MaLR -10 1641 679 2513 112 19 11 chr4 48385458 48385825 -153942522 + THE1C LTR MaLR 6 375 0 3503 193 18 5 chr4 48385826 48386499 -153941848 - MSTB-int LTR MaLR -969 682 1 2179 172 62 2 chr4 48386499 48386901 -153941446 - MSTB LTR MaLR 0 426 1 3148 137 4 0 chr4 48386907 48387410 -153940937 + L1PA15 LINE L1 5654 6158 -7 219 188 0 129 chr4 48387852 48387937 -153940410 + MIR SINE MIR 178 251 -11 22 99 0 0 chr4 48389627 48389698 -153938649 + AT_rich Low_complexity Low_complexity 1 71 0 307 294 145 56 chr4 48390152 48390366 -153937981 - MIR SINE MIR -17 245 13 283 29 0 0 chr4 48390433 48390468 -153937879 + MADE1 DNA Mariner 1 35 -45 504 149 0 0 chr4 48390688 48390775 -153937572 + L1MA3 LINE L1 6218 6304 -1 966 197 71 4 chr4 48391387 48391641 -153936706 - Charlie5 DNA MER1_type 0 2624 2354 266 286 127 0 chr4 48391662 48391788 -153936559 - Charlie5 DNA MER1_type -2451 161 20 1848 232 120 17 chr4 48392050 48392515 -153935832 + MLT2B1 LTR ERVL 8 520 0 1141 92 12 0 chr4 48393947 48394120 -153934227 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 501 295 20 0 chr4 48394271 48394420 -153933927 - MIR SINE MIR 0 262 111 545 291 24 0 chr4 48394424 48394589 -153933758 - MLT1H LTR MaLR 0 549 381 973 218 94 34 chr4 48394631 48394897 -153933450 - MLT1H LTR MaLR -252 297 16 1269 135 0 5 chr4 48395100 48395293 -153933054 - AluY SINE Alu 0 311 120 291 205 74 49 chr4 48396659 48396781 -153931566 - MIR SINE MIR -54 208 84 203 345 0 12 chr4 48396802 48396886 -153931461 + L2 LINE L2 2404 2486 -828 1353 255 60 58 chr4 48396912 48397446 -153930901 - L1MC5 LINE L1 -810 7151 6617 180 341 187 0 chr4 48397487 48397578 -153930769 - MIR SINE MIR -124 138 31 183 325 140 44 chr4 48398354 48398468 -153929879 - L2 LINE L2 -2 3270 3146 3641 145 72 13 chr4 48398632 48399302 -153929045 - L1PA16 LINE L1 -95 6071 5363 1072 193 0 5 chr4 48399300 48399518 -153928829 - L1 LINE L1 -2177 3969 3753 * 987 211 21 16 chr4 48399528 48399770 -153928577 - AluJb SINE Alu -4 308 66 5726 256 25 11 chr4 48399771 48401968 -153926379 - L1PA15-16 LINE L1 -2612 4237 2014 777 172 13 0 chr4 48401962 48402113 -153926234 - L1M4 LINE L1 -2200 3946 3794 * 2153 89 3 0 chr4 48403452 48403761 -153924586 - AluY SINE Alu 0 310 1 2026 129 6 10 chr4 48403844 48404155 -153924192 - AluSg SINE Alu 0 310 1 539 271 59 0 chr4 48404421 48404539 -153923808 + L2 LINE L2 3185 3309 -4 270 354 75 12 chr4 48404819 48405059 -153923288 + MLT1J LTR MaLR 257 511 0 229 176 44 73 chr4 48405872 48405940 -153922407 + Tigger5 DNA MER2_type 293 358 -1965 250 260 73 100 chr4 48406178 48406328 -153922019 - MIR SINE MIR -69 193 48 258 32 0 0 chr4 48406463 48406494 -153921853 + (TAGA)n Simple_repeat Simple_repeat 1 31 0 499 281 30 40 chr4 48406535 48406734 -153921613 + L2 LINE L2 2549 2745 -569 367 222 68 0 chr4 48406737 48406854 -153921493 + MER53 DNA DNA 10 134 -55 387 0 0 0 chr4 48406893 48406936 -153921411 + (TA)n Simple_repeat Simple_repeat 2 44 0 261 194 0 16 chr4 48406942 48407004 -153921343 - MER53 DNA DNA -125 64 4 283 337 20 0 chr4 48407004 48407102 -153921245 + L2 LINE L2 2770 2869 -445 397 295 91 55 chr4 48407171 48407425 -153920922 + L2 LINE L2 3049 3311 -2 1603 173 182 6 chr4 48408452 48408793 -153919554 + MSTA LTR MaLR 28 428 0 279 0 0 0 chr4 48409158 48409189 -153919158 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 10115 68 6 5 chr4 48409312 48411450 -153916897 - L1PA6 LINE L1 0 6154 4016 25408 111 15 12 chr4 48411452 48415307 -153913040 - L1PA6 LINE L1 -2268 3878 11 374 299 62 21 chr4 48415403 48415547 -153912800 + MIR3 SINE MIR 31 180 -28 322 223 9 62 chr4 48415909 48416021 -153912326 - L1ME3A LINE L1 -219 5951 5846 803 270 26 20 chr4 48416059 48416326 -153912021 - L1PA8 LINE L1 -325 5847 5580 615 330 68 63 chr4 48416329 48417238 -153911109 - L1MEd LINE L1 -4762 1548 602 24 32 0 0 chr4 48417774 48417805 -153910542 + AT_rich Low_complexity Low_complexity 1 31 0 292 179 26 0 chr4 48418908 48418986 -153909361 + (TA)n Simple_repeat Simple_repeat 1 80 0 312 261 35 162 chr4 48419069 48419353 -153908994 + MER102b DNA MER1_type 84 331 -10 337 336 141 0 chr4 48422129 48422257 -153906090 - MIR SINE MIR -15 247 102 319 340 39 55 chr4 48422411 48422667 -153905680 + MLT1K LTR MaLR 199 450 -138 2107 144 125 8 chr4 48422919 48423302 -153905045 - MSTA LTR MaLR 0 428 1 233 263 0 18 chr4 48424099 48424156 -153904191 + CT-rich Low_complexity Low_complexity 6 61 0 357 283 62 0 chr4 48425823 48425936 -153902411 + MIR SINE MIR 7 126 -136 5843 202 39 12 chr4 48426163 48427409 -153900938 - L1MC3 LINE L1 -18 7767 6488 253 323 20 0 chr4 48427465 48427564 -153900783 - MIR SINE MIR -10 252 152 1423 186 106 13 chr4 48428488 48428799 -153899548 - MER4D LTR ERV1 -17 886 547 2114 29 0 0 chr4 48428800 48429045 -153899302 - L1P2 LINE L1 -475 5680 5436 1303 36 0 0 chr4 48429038 48429232 -153899115 + L1PA4 LINE L1 5915 6154 -1 * 2297 183 45 28 chr4 48429265 48429794 -153898553 - MER4D LTR ERV1 -334 538 1 455 307 125 0 chr4 48429968 48430144 -153898203 - MIR SINE MIR -30 232 35 311 281 141 37 chr4 48430187 48430514 -153897833 - MLT1J1 LTR MaLR -18 428 68 1253 220 96 41 chr4 48430541 48430905 -153897442 + MLT1B LTR MaLR 1 384 -6 25 31 0 0 chr4 48430998 48431030 -153897317 + AT_rich Low_complexity Low_complexity 1 32 0 660 221 0 22 chr4 48431041 48431177 -153897170 + FLAM_A SINE Alu 1 133 0 2063 137 124 18 chr4 48431510 48431897 -153896450 + MSTA LTR MaLR 1 428 0 244 111 0 0 chr4 48432541 48432577 -153895770 - MLT2C2 LTR ERVL 0 464 429 240 254 169 16 chr4 48432634 48432823 -153895524 - L1MC5 LINE L1 -271 7690 7473 2623 182 34 48 chr4 48432827 48433387 -153894960 + MER21A LTR ERV1 378 929 -2 1741 221 45 94 chr4 48433390 48433799 -153894548 - L1MC5 LINE L1 -569 7392 6965 2094 102 0 20 chr4 48433799 48434092 -153894255 + AluSg SINE Alu 1 287 -23 1741 221 45 94 chr4 48434092 48434340 -153894007 - L1MC5 LINE L1 -996 6965 6771 4254 181 6 38 chr4 48434340 48435159 -153893188 - MER54B LTR ERVL 0 793 1 1741 221 45 94 chr4 48435159 48435346 -153893001 - L1MC5 LINE L1 -1190 6771 6576 1559 256 98 26 chr4 48435556 48436324 -153892023 - L1MEc LINE L1 -4907 1489 667 324 157 52 7 chr4 48436324 48436477 -153891870 + (TA)n Simple_repeat Simple_repeat 2 161 0 1721 288 34 26 chr4 48436486 48437107 -153891240 - L1MEc LINE L1 -5732 664 39 468 329 52 9 chr4 48437328 48437559 -153890788 + L1ME3A LINE L1 5638 5878 -292 2157 106 72 29 chr4 48437890 48438238 -153890109 - THE1B LTR MaLR 0 364 2 11076 113 4 4 chr4 48438239 48439817 -153888530 - THE1B-int LTR MaLR 0 1580 2 2095 137 57 20 chr4 48439818 48440169 -153888178 - THE1B LTR MaLR 0 364 1 22 80 0 0 chr4 48440813 48440863 -153887484 + AT_rich Low_complexity Low_complexity 1 50 0 474 330 101 25 chr4 48441581 48441857 -153886490 + MLT1J2 LTR MaLR 33 329 -121 504 143 0 0 chr4 48441925 48442002 -153886345 + MER101 LTR ERV1 1 77 -397 * 1114 181 10 0 chr4 48441998 48442203 -153886144 - MER101 LTR ERV1 -7 467 261 1993 177 71 3 chr4 48442209 48442577 -153885770 + MER101 LTR ERV1 82 474 0 410 326 58 0 chr4 48442699 48442837 -153885510 + MIR SINE MIR 28 173 -89 819 151 0 32 chr4 48446816 48447002 -153881345 + CT-rich Low_complexity Low_complexity 1 180 0 337 351 155 0 chr4 48447074 48447242 -153881105 + MIR SINE MIR 15 208 -54 2422 201 76 86 chr4 48447313 48448106 -153880241 - L1MD2 LINE L1 -11 6231 5447 21 36 0 0 chr4 48448201 48448229 -153880118 + AT_rich Low_complexity Low_complexity 1 28 0 505 326 113 67 chr4 48448340 48449014 -153879333 - L2 LINE L2 -340 2974 2270 258 32 0 0 chr4 48452312 48452343 -153876004 + (TG)n Simple_repeat Simple_repeat 2 32 0 341 149 15 0 chr4 48452392 48452459 -153875888 + (TA)n Simple_repeat Simple_repeat 1 68 0 345 270 175 8 chr4 48453065 48453191 -153875156 + MLT1J2 LTR MaLR 399 545 -4 392 337 74 55 chr4 48453408 48453812 -153874535 + L3 LINE CR1 423 834 -743 3016 30 0 3 chr4 48453852 48454214 -153874133 - L1P3 LINE L1 -470 5684 5324 1727 73 0 0 chr4 48454214 48454445 -153873902 + L1PA7 LINE L1 5920 6151 -3 21 0 0 0 chr4 48456158 48456179 -153872168 + AT_rich Low_complexity Low_complexity 1 21 0 473 276 79 114 chr4 48457414 48457611 -153870736 - MLT1J1 LTR MaLR -59 391 214 198 0 0 0 chr4 48457611 48457633 -153870714 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 473 276 79 114 chr4 48457633 48457840 -153870507 - MLT1J1 LTR MaLR -236 214 1 24 0 0 0 chr4 48457980 48458004 -153870343 + AT_rich Low_complexity Low_complexity 1 24 0 2286 114 0 0 chr4 48458055 48458362 -153869985 - AluSg SINE Alu -3 307 1 320 208 91 26 chr4 48458706 48458783 -153869564 + MIR3 SINE MIR 81 162 -46 323 295 83 26 chr4 48460117 48460273 -153868074 - MIR3 SINE MIR -7 201 37 1995 158 3 0 chr4 48460872 48461182 -153867165 + AluSx SINE Alu 1 311 -1 1053 241 134 6 chr4 48461645 48461965 -153866382 + Charlie2b DNA MER1_type 200 560 -2222 302 100 0 0 chr4 48461967 48462007 -153866340 + AluSc SINE Alu 192 231 -68 268 255 49 49 chr4 48462038 48462140 -153866207 + Charlie2b DNA MER1_type 569 670 -2112 747 284 58 14 chr4 48462226 48462571 -153865776 + Charlie2a DNA MER1_type 1485 1844 -1018 2602 183 4 26 chr4 48462605 48463147 -153865200 - L1MA10 LINE L1 -7 6327 5798 2062 231 55 69 chr4 48463149 48463772 -153864575 - MLT1E1 LTR MaLR -9 645 32 647 196 86 94 chr4 48463783 48464038 -153864309 + Charlie2a DNA MER1_type 1841 2093 -769 311 320 88 52 chr4 48464061 48464461 -153863886 + MLT1J LTR MaLR 30 443 -68 26 30 0 0 chr4 48464945 48464978 -153863369 + AT_rich Low_complexity Low_complexity 1 33 0 208 308 33 66 chr4 48466286 48466377 -153861970 + L2 LINE L2 3116 3203 -69 185 302 135 10 chr4 48466533 48466629 -153861718 - MIR SINE MIR -5 257 150 4367 194 73 2 chr4 48466629 48466783 -153861564 - L1MA10 LINE L1 -1 6333 6191 270 0 0 0 chr4 48466783 48466813 -153861534 + (TTA)n Simple_repeat Simple_repeat 1 30 0 4367 194 73 2 chr4 48466813 48466859 -153861488 - L1MA10 LINE L1 -143 6191 6150 3233 164 11 6 chr4 48466859 48467383 -153860964 - MER1A DNA MER1_type 0 527 1 4367 194 73 2 chr4 48467383 48468097 -153860250 - L1MA10 LINE L1 -184 6150 5353 400 282 65 0 chr4 48468110 48468234 -153860113 - MIR SINE MIR -119 143 12 1505 182 59 76 chr4 48469191 48469532 -153858815 + LTR32 LTR ERVL 15 349 -122 792 205 0 6 chr4 48469575 48469731 -153858616 + LTR32 LTR ERVL 317 471 0 1614 214 72 47 chr4 48469849 48470322 -153858025 - MLT1D LTR MaLR 0 505 21 3278 136 41 2 chr4 48470344 48470851 -153857496 - MER1A DNA MER1_type 0 527 1 10585 113 10 2 chr4 48471147 48473591 -153854756 - L1PA8 LINE L1 0 6487 4060 1249 159 0 0 chr4 48473593 48473788 -153854559 - AluSg/x SINE Alu -6 306 112 752 181 0 0 chr4 48473810 48473943 -153854404 - FLAM_C SINE Alu 0 133 1 6706 181 37 24 chr4 48473944 48477407 -153850940 - L1PA8 LINE L1 -2390 4071 3 201 260 20 0 chr4 48479567 48479617 -153848730 - L2 LINE L2 -7 3306 3256 1371 180 85 20 chr4 48479978 48480272 -153848075 + MER2 DNA MER2_type 33 345 0 3816 212 44 1 chr4 48480652 48481854 -153846493 + L1M3 LINE L1 4376 5635 -677 1842 235 18 3 chr4 48481854 48482241 -153846106 - MER70A LTR ERVL 0 472 80 752 178 0 7 chr4 48482245 48482380 -153845967 - FLAM_C SINE Alu -9 134 1 461 192 13 0 chr4 48482381 48482459 -153845888 - MER70B LTR ERVL -499 79 1 690 192 7 34 chr4 48482462 48482608 -153845739 + L1M3 LINE L1 5634 5775 -559 598 143 19 54 chr4 48482632 48482759 -153845588 - MSTB1 LTR MaLR 0 432 306 568 234 0 0 chr4 48482781 48482888 -153845459 - FLAM_A SINE Alu -20 122 16 234 0 0 0 chr4 48483005 48483031 -153845316 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 26 50 0 0 chr4 48483850 48483890 -153844457 + AT_rich Low_complexity Low_complexity 1 40 0 182 333 45 36 chr4 48484294 48484405 -153843942 + MIR SINE MIR 14 125 -137 2211 246 78 58 chr4 48484675 48485542 -153842805 - L1ME2 LINE L1 0 6164 5280 182 396 31 44 chr4 48486496 48486655 -153841692 - L2 LINE L2 -1 3271 3115 2217 154 19 47 chr4 48487118 48487546 -153840801 - Tigger2a DNA MER2_type 0 434 19 356 211 21 0 chr4 48489531 48489626 -153838721 + (CATATA)n Simple_repeat Simple_repeat 5 101 0 462 300 89 59 chr4 48490095 48490398 -153837949 - L2 LINE L2 0 3313 3002 628 192 0 13 chr4 48490622 48490778 -153837569 + CT-rich Low_complexity Low_complexity 4 157 0 423 320 31 0 chr4 48490821 48490949 -153837398 - L2 LINE L2 -1 3312 3181 309 327 235 7 chr4 48491180 48491333 -153837014 - MER5A DNA MER1_type 0 189 2 527 198 9 9 chr4 48491550 48491661 -153836686 - LTR52 LTR ERVL -273 148 38 2118 114 7 3 chr4 48491662 48491970 -153836377 + AluSg SINE Alu 1 309 -1 1887 98 4 0 chr4 48492300 48492555 -153835792 + AluY SINE Alu 56 311 0 598 25 25 0 chr4 48492931 48493011 -153835336 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 21 0 0 0 chr4 48493154 48493175 -153835172 + AT_rich Low_complexity Low_complexity 1 21 0 242 28 0 28 chr4 48493945 48493981 -153834366 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 296 253 44 22 chr4 48494068 48494159 -153834188 - MIR SINE MIR -75 187 95 601 297 80 55 chr4 48494160 48494524 -153833823 - MLT1I LTR MaLR -1 408 36 234 370 37 0 chr4 48494559 48494640 -153833707 - MIR SINE MIR -166 96 13 43 20 0 0 chr4 48496624 48496674 -153831673 + AT_rich Low_complexity Low_complexity 1 50 0 258 301 30 38 chr4 48496995 48497128 -153831219 + MIR SINE MIR 81 212 -50 411 268 9 0 chr4 48497635 48497747 -153830600 - MIR SINE MIR -26 236 124 293 309 81 52 chr4 48498163 48498299 -153830048 + MIR SINE MIR 49 188 -74 21 36 0 0 chr4 48499838 48499866 -153828481 + AT_rich Low_complexity Low_complexity 1 28 0 297 164 36 0 chr4 48500334 48500389 -153827958 - MLT2C1 LTR ERVL 0 520 464 518 164 25 19 chr4 48500395 48500554 -153827793 + (TA)n Simple_repeat Simple_repeat 1 160 0 1500 180 97 3 chr4 48500596 48500907 -153827440 - MLT2C1 LTR ERVL -57 340 1 249 158 53 105 chr4 48502821 48502897 -153825450 - L1M4 LINE L1 -552 5632 5561 255 339 12 12 chr4 48502900 48503065 -153825282 - L1M4 LINE L1 -2596 3550 3386 225 0 0 0 chr4 48503165 48503190 -153825157 + (T)n Simple_repeat Simple_repeat 1 25 0 369 206 71 40 chr4 48503190 48503316 -153825031 - L1M4 LINE L1 -3774 2372 2243 1069 72 93 0 chr4 48503863 48504002 -153824345 - AluSq/x SINE Alu -160 152 1 2544 181 216 82 chr4 48504013 48504913 -153823434 - LTR28 LTR ERV1 0 1020 1 2413 71 0 0 chr4 48505111 48505421 -153822926 + AluY SINE Alu 1 310 -1 183 304 72 0 chr4 48505614 48505683 -153822664 + MER5A DNA MER1_type 88 161 -28 * 193 243 7 7 chr4 48505628 48505684 -153822663 - MER5B DNA MER1_type -95 94 21 2125 176 0 7 chr4 48507395 48507798 -153820549 - L1P4 LINE L1 -845 5301 4902 1779 146 7 0 chr4 48507799 48508100 -153820247 + L1P4 LINE L1 5316 5618 -547 2085 132 30 28 chr4 48508100 48508463 -153819884 + THE1B LTR MaLR 1 364 0 5635 88 9 6 chr4 48508463 48509245 -153819102 + THE1B-int LTR MaLR 1 784 -796 325 309 114 13 chr4 48509563 48509712 -153818635 - L2 LINE L2 0 3313 3150 615 248 41 0 chr4 48510413 48510597 -153817750 + AluJb SINE Alu 132 321 0 192 363 41 29 chr4 48511370 48511541 -153816806 - L2 LINE L2 -1294 2020 1848 251 297 139 0 chr4 48512237 48512338 -153816009 + MIR3 SINE MIR 87 201 -7 186 265 0 20 chr4 48514907 48514956 -153813391 - L2 LINE L2 -5 3267 3220 22 0 0 0 chr4 48515558 48515580 -153812767 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr4 48515777 48515815 -153812532 + AT_rich Low_complexity Low_complexity 1 38 0 210 143 0 0 chr4 48516035 48516070 -153812277 + (T)n Simple_repeat Simple_repeat 1 35 0 624 232 192 10 chr4 48516738 48516936 -153811411 + MIR SINE MIR 3 236 -26 410 345 74 13 chr4 48517103 48517332 -153811015 + MIR SINE MIR 17 259 -3 26 64 0 0 chr4 48517461 48517508 -153810839 + AT_rich Low_complexity Low_complexity 1 47 0 2037 118 7 3 chr4 48517731 48518037 -153810310 - AluSp SINE Alu -6 307 1 46 68 0 0 chr4 48518121 48518209 -153810138 + AT_rich Low_complexity Low_complexity 1 88 0 23 78 0 0 chr4 48518352 48518403 -153809944 + AT_rich Low_complexity Low_complexity 1 51 0 564 262 184 20 chr4 48518456 48518907 -153809440 - L1ME3 LINE L1 -216 5946 5422 3638 237 28 42 chr4 48518964 48520770 -153807577 - L1MCb LINE L1 -4771 1793 3 26 50 0 0 chr4 48520900 48520940 -153807407 + AT_rich Low_complexity Low_complexity 1 40 0 22 94 0 0 chr4 48520957 48521021 -153807326 + AT_rich Low_complexity Low_complexity 1 64 0 222 356 19 29 chr4 48521690 48521794 -153806553 + MER5B DNA MER1_type 21 123 -55 186 318 37 65 chr4 48523562 48523578 -153804769 - MER5B DNA MER1_type -48 130 115 1535 202 40 48 chr4 48523578 48523974 -153804373 + MLT2C1 LTR ERVL 5 397 0 186 318 37 65 chr4 48523974 48524064 -153804283 - MER5B DNA MER1_type -63 115 27 28 29 0 0 chr4 48524226 48524261 -153804086 + AT_rich Low_complexity Low_complexity 1 35 0 1207 229 23 49 chr4 48524330 48524636 -153803711 - AluJb SINE Alu -14 298 1 1057 172 13 12 chr4 48524648 48524868 -153803479 + L1MB7 LINE L1 5710 5928 -256 790 161 0 7 chr4 48524868 48525011 -153803336 + L1MB7 LINE L1 6034 6175 -9 1057 172 13 12 chr4 48525011 48525035 -153803312 + L1MB7 LINE L1 5928 6175 -9 2498 172 106 18 chr4 48525056 48525749 -153802598 + L1MB2 LINE L1 4727 5525 -646 1634 174 19 32 chr4 48525749 48526065 -153802282 - AluJo SINE Alu 0 312 1 2498 172 106 18 chr4 48526065 48526357 -153801990 + L1MB2 LINE L1 5525 5790 -381 499 99 74 6 chr4 48526377 48526539 -153801808 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 1485 184 59 6 chr4 48526544 48526864 -153801483 + L1MB2 LINE L1 5783 6119 -52 310 288 88 0 chr4 48527018 48527098 -153801249 - MIR SINE MIR -69 139 53 462 262 9 0 chr4 48527368 48527475 -153800872 - MER69 DNA AcHobo -2414 112 5 243 210 84 132 chr4 48527863 48528030 -153800317 + MIR SINE MIR 94 252 -10 234 250 83 56 chr4 48528266 48528410 -153799937 - L1MA9 LINE L1 -130 6182 6035 1759 157 0 33 chr4 48530601 48530906 -153797441 - AluSx SINE Alu -14 298 4 21 36 0 0 chr4 48531891 48531919 -153796428 + AT_rich Low_complexity Low_complexity 1 28 0 372 305 23 15 chr4 48532606 48532737 -153795610 + MLT1I LTR MaLR 81 212 -197 201 347 24 24 chr4 48533461 48533585 -153794762 + L2 LINE L2 2937 3060 -212 21 0 0 0 chr4 48533667 48533688 -153794659 + AT_rich Low_complexity Low_complexity 1 21 0 201 196 0 0 chr4 48533778 48533829 -153794518 + CT-rich Low_complexity Low_complexity 2 52 0 22 0 0 0 chr4 48534376 48534398 -153793949 + AT_rich Low_complexity Low_complexity 1 22 0 1874 132 7 4 chr4 48534467 48534782 -153793565 + AluY SINE Alu 6 321 0 295 218 53 117 chr4 48535025 48535254 -153793093 - L1ME LINE L1 -408 5754 5558 381 323 60 8 chr4 48535254 48535489 -153792858 - L1M4 LINE L1 -2596 3550 3304 225 0 0 0 chr4 48535515 48535540 -153792807 + (T)n Simple_repeat Simple_repeat 1 25 0 231 262 71 40 chr4 48535540 48535666 -153792681 - L1M4 LINE L1 -3774 2372 2243 620 319 110 12 chr4 48537813 48538148 -153790199 - ERVL LTR ERVL -1236 4528 4161 734 350 78 43 chr4 48538672 48539350 -153788997 - ERVL LTR ERVL -2163 3491 2790 989 280 145 11 chr4 48539369 48539841 -153788506 + L1MC4a LINE L1 5312 5720 -2088 387 0 0 0 chr4 48539841 48539884 -153788463 + (TA)n Simple_repeat Simple_repeat 1 43 0 2166 108 0 3 chr4 48539886 48540181 -153788166 - AluY SINE Alu -17 294 1 989 280 145 11 chr4 48540181 48540237 -153788110 + L1MC4a LINE L1 5720 5914 -1894 9672 185 27 11 chr4 48540299 48543171 -153785176 - L1PB4 LINE L1 -1 6155 3242 2042 187 23 26 chr4 48543505 48543890 -153784457 + MLT2B3 LTR ERVL 1 384 -170 1317 297 153 30 chr4 48543891 48544631 -153783716 + L2 LINE L2 2045 2875 -439 387 266 7 77 chr4 48544670 48544813 -153783534 + MLT1H LTR MaLR 78 210 -339 5993 112 52 20 chr4 48544821 48547266 -153781081 + SVA Other Other 18 1385 -1 466 295 86 53 chr4 48547266 48547568 -153780779 + MLT1H LTR MaLR 209 520 -29 575 295 20 45 chr4 48547778 48547978 -153780369 + MLT1J2 LTR MaLR 3 197 -253 220 337 56 0 chr4 48547980 48548069 -153780278 + L2 LINE L2 3212 3305 -8 2165 219 105 48 chr4 48548214 48548825 -153779522 - MLT1E1 LTR MaLR -8 646 1 633 239 185 22 chr4 48548831 48548925 -153779422 + HAL1 LINE L1 1557 1634 -873 1141 232 78 99 chr4 48548925 48549499 -153778848 + MER68 LTR ERV1 1 562 0 633 239 185 22 chr4 48549499 48549680 -153778667 + HAL1 LINE L1 1634 1877 -630 232 125 83 0 chr4 48549802 48549898 -153778449 + (TATAA)n Simple_repeat Simple_repeat 1 104 0 45 69 0 0 chr4 48549917 48550004 -153778343 + AT_rich Low_complexity Low_complexity 1 87 0 975 127 17 0 chr4 48550035 48550208 -153778139 + (TA)n Simple_repeat Simple_repeat 2 177 0 354 85 0 0 chr4 48550208 48550255 -153778092 - Alu SINE Alu -9 291 245 237 341 11 11 chr4 48550259 48550347 -153778000 - MIR SINE MIR -15 247 160 21 36 0 0 chr4 48552659 48552687 -153775660 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr4 48553455 48553499 -153774848 + AT_rich Low_complexity Low_complexity 1 44 0 304 154 0 19 chr4 48553566 48553616 -153774731 + MLT1A1 LTR MaLR 1 49 -316 3997 174 58 33 chr4 48553616 48554658 -153773689 - MER11C LTR ERVK 0 1071 56 252 0 0 0 chr4 48554946 48554974 -153773373 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 627 348 68 65 chr4 48555642 48556635 -153771712 - HERVL LTR ERVL -1807 3847 2852 326 349 47 8 chr4 48556628 48556757 -153771590 - HERVL LTR ERVL -4102 1662 1529 * 197 286 15 135 chr4 48557505 48557574 -153770773 + L2 LINE L2 3180 3227 -86 1769 183 0 6 chr4 48557574 48557885 -153770462 - AluJb SINE Alu -3 309 1 197 286 15 135 chr4 48557885 48557948 -153770399 + L2 LINE L2 3227 3296 -17 28 0 0 0 chr4 48558698 48558726 -153769621 + AT_rich Low_complexity Low_complexity 1 28 0 292 342 92 0 chr4 48559525 48559645 -153768702 - L2 LINE L2 -4 3309 3179 565 288 217 21 chr4 48559769 48560189 -153768158 + LTR50 LTR ERVL 8 509 -286 341 347 50 57 chr4 48560440 48560740 -153767607 + L2 LINE L2 2233 2530 -784 678 258 14 70 chr4 48561383 48561596 -153766751 + MIR SINE MIR 40 240 -22 203 282 24 0 chr4 48561599 48561684 -153766663 + (TA)n Simple_repeat Simple_repeat 2 88 0 1041 300 53 45 chr4 48561693 48561865 -153766482 + L2 LINE L2 1927 2096 -1218 2206 139 5 39 chr4 48561865 48562253 -153766094 - THE1C LTR MaLR 0 375 1 1041 300 53 45 chr4 48562253 48562547 -153765800 + L2 LINE L2 2096 2397 -917 23 33 0 0 chr4 48562626 48562656 -153765691 + AT_rich Low_complexity Low_complexity 1 30 0 227 171 0 0 chr4 48563049 48563090 -153765257 + CT-rich Low_complexity Low_complexity 2 42 0 6283 104 0 23 chr4 48564780 48565877 -153762470 - L1PA3 LINE L1 -5 6150 5108 5283 37 1 0 chr4 48565877 48566523 -153761824 + L1PA3 LINE L1 4463 5109 -1037 283 307 20 10 chr4 48567015 48567116 -153761231 - MLT1I LTR MaLR -229 180 79 434 310 100 39 chr4 48568432 48568822 -153759525 + HAL1b LINE L1 322 735 -613 617 277 90 61 chr4 48569033 48569612 -153758735 + L1MC5 LINE L1 6476 6984 -824 1084 259 57 40 chr4 48569732 48570156 -153758191 + MLT1C LTR MaLR 37 467 0 21 0 0 0 chr4 48570322 48570343 -153758004 + AT_rich Low_complexity Low_complexity 1 21 0 5888 55 22 4 chr4 48572116 48572873 -153755474 + L1PA5 LINE L1 5384 6154 0 4187 226 16 35 chr4 48573328 48574744 -153753603 - L1MB3 LINE L1 0 6183 4798 1529 146 77 0 chr4 48574744 48575004 -153753343 - AluSx SINE Alu -12 300 21 4187 226 16 35 chr4 48575004 48575100 -153753247 - L1MB3 LINE L1 -1385 4798 4702 351 266 119 68 chr4 48575109 48575286 -153753061 + L1M4c LINE L1 1282 1467 -4917 284 250 88 38 chr4 48575288 48575448 -153752899 + L1M4c LINE L1 1635 1802 -4761 5216 209 31 17 chr4 48575537 48576841 -153751506 + L1M4c LINE L1 2603 3925 -2457 3975 180 30 25 chr4 48576825 48578149 -153750198 + L1MA1 LINE L1 4453 5847 -455 * 180 0 0 0 chr4 48578149 48578169 -153750178 + (TA)n Simple_repeat Simple_repeat 2 21 0 3975 180 30 25 chr4 48578169 48578628 -153749719 + L1MA1 LINE L1 5847 6302 0 581 262 63 4 chr4 48578624 48578895 -153749452 + L1ME1 LINE L1 2250 2536 -4027 * 756 238 12 0 chr4 48578895 48579059 -153749288 + L1 LINE L1 4742 4907 -1239 * 861 248 28 61 chr4 48579050 48579441 -153748906 + L1ME1 LINE L1 2477 2854 -3528 836 249 60 3 chr4 48579435 48579769 -153748578 + L1ME1 LINE L1 4607 4959 -1423 * 2535 240 39 40 chr4 48579818 48580588 -153747759 + L1ME1 LINE L1 5587 6355 -47 408 267 0 30 chr4 48580485 48580620 -153747727 + L1MA10 LINE L1 6416 6546 -24 * 213 196 0 0 chr4 48580628 48580674 -153747673 + GA-rich Low_complexity Low_complexity 3 48 0 2010 95 3 54 chr4 48580762 48581078 -153747269 + AluSq SINE Alu 1 300 -13 32 56 0 0 chr4 48581736 48581772 -153746575 + AT_rich Low_complexity Low_complexity 1 36 0 978 86 22 0 chr4 48581774 48581913 -153746434 - AluYa5 SINE Alu -30 281 140 2094 102 16 3 chr4 48582721 48583026 -153745321 - AluY SINE Alu 0 311 3 597 277 179 28 chr4 48583644 48584012 -153744335 - MLT1G LTR MaLR 0 590 114 377 253 99 50 chr4 48584088 48584309 -153744038 + MLT1J1 LTR MaLR 73 304 -142 27 62 0 0 chr4 48584604 48584652 -153743695 + AT_rich Low_complexity Low_complexity 1 48 0 28 0 0 0 chr4 48584851 48584879 -153743468 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 48585527 48585555 -153742792 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr4 48586486 48586518 -153741829 + AT_rich Low_complexity Low_complexity 1 32 0 311 307 13 13 chr4 48586518 48586670 -153741677 + MIR SINE MIR 45 196 -64 26 50 0 0 chr4 48587255 48587295 -153741052 + AT_rich Low_complexity Low_complexity 1 40 0 350 314 157 0 chr4 48587363 48587567 -153740780 - MIR SINE MIR -14 248 13 393 179 15 0 chr4 48587637 48587704 -153740643 + MER2 DNA MER2_type 1 68 -277 210 71 0 0 chr4 48588132 48588160 -153740187 + (T)n Simple_repeat Simple_repeat 1 28 0 249 136 0 85 chr4 48589152 48589211 -153739136 + MLT1D LTR MaLR 54 107 -519 328 179 0 0 chr4 48589250 48589306 -153739041 + MLT1D LTR MaLR 111 166 -460 518 244 9 0 chr4 48589313 48589428 -153738919 - FRAM SINE Alu -16 160 45 927 210 45 106 chr4 48589429 48589786 -153738561 + MLT1D LTR MaLR 169 503 -2 209 256 0 0 chr4 48589791 48589834 -153738513 + L2 LINE L2 3178 3220 -52 7031 182 41 65 chr4 48590086 48591774 -153736573 - MER52A LTR ERV1 0 1755 1 25 31 0 0 chr4 48592914 48592946 -153735401 + AT_rich Low_complexity Low_complexity 1 32 0 16892 201 37 16 chr4 48593740 48594799 -153733548 - L1PA13 LINE L1 -1 6813 5777 2913 100 23 11 chr4 48594799 48595183 -153733164 + MLT2A1 LTR ERVL 1 379 -65 459 0 0 0 chr4 48595183 48595234 -153733113 + (TA)n Simple_repeat Simple_repeat 2 52 0 204 40 0 0 chr4 48595238 48595263 -153733084 + (CA)n Simple_repeat Simple_repeat 2 26 0 2913 100 23 11 chr4 48595263 48595312 -153733035 + MLT2A1 LTR ERVL 381 444 0 16892 201 37 16 chr4 48595312 48600161 -153728186 - L1PA13 LINE L1 -1037 5777 774 1104 218 75 70 chr4 48600161 48600697 -153727650 - LTR25 LTR ERV1 -189 605 29 1034 252 5 0 chr4 48601335 48601557 -153726790 - MER58A DNA MER1_type 0 224 2 22 0 0 0 chr4 48601862 48601884 -153726463 + AT_rich Low_complexity Low_complexity 1 22 0 264 363 62 0 chr4 48602031 48602177 -153726170 - L2 LINE L2 -1192 2122 1968 188 246 98 0 chr4 48602216 48602277 -153726070 + L2 LINE L2 2775 2841 -473 21 0 0 0 chr4 48603660 48603681 -153724666 + AT_rich Low_complexity Low_complexity 1 21 0 561 229 78 39 chr4 48603700 48603859 -153724488 - L1MDa LINE L1 -2154 4386 4216 1149 220 163 3 chr4 48603859 48604159 -153724188 + MER7A DNA MER2_type 1 346 0 561 229 78 39 chr4 48604159 48604204 -153724143 - L1MDa LINE L1 -2324 4216 4174 658 289 120 11 chr4 48604206 48604739 -153723608 - L1MDa LINE L1 -2534 4006 3416 * 3492 235 51 30 chr4 48604732 48606310 -153722037 - L1MDa LINE L1 -3458 3082 1470 730 168 8 0 chr4 48606317 48606442 -153721905 + MSTA LTR MaLR 1 126 -302 1334 133 44 5 chr4 48606481 48606684 -153721663 + MER30 DNA MER1_type 20 230 0 * 1810 164 30 3 chr4 48606684 48606987 -153721360 + MSTA LTR MaLR 118 428 0 270 0 0 0 chr4 48606998 48607028 -153721319 + (TG)n Simple_repeat Simple_repeat 2 31 0 1183 198 118 3 chr4 48607032 48607371 -153720976 - L1MDa LINE L1 -5086 1454 1077 335 330 39 18 chr4 48607492 48607777 -153720570 + L1MEc LINE L1 1739 2029 -4367 273 262 40 60 chr4 48607775 48608023 -153720324 - L1MDa LINE L1 -3613 2927 2685 * 2936 199 20 5 chr4 48608099 48608833 -153719514 + L1P4 LINE L1 4697 5442 -724 1795 304 59 12 chr4 48608927 48609587 -153718760 - L1MDa LINE L1 -5460 1080 72 244 333 32 11 chr4 48610036 48610129 -153718218 + MIR SINE MIR 58 152 -110 370 318 45 11 chr4 48610147 48610178 -153718169 - L1M4 LINE L1 -2665 3481 3453 7343 29 3 0 chr4 48610178 48611562 -153716785 - L1PA4 LINE L1 -2 6153 4758 370 318 45 11 chr4 48611562 48611709 -153716638 - L1M4 LINE L1 -2693 3453 3297 308 336 0 0 chr4 48612060 48612173 -153716174 + L1 LINE L1 4596 4708 -1438 336 341 42 6 chr4 48612290 48612457 -153715890 + L1 LINE L1 4882 5054 -1092 404 283 131 30 chr4 48612825 48613062 -153715285 - L2 LINE L2 -755 2559 2299 233 272 0 0 chr4 48613437 48613518 -153714829 + L1MEc LINE L1 1020 1100 -5296 243 273 72 0 chr4 48613740 48613854 -153714493 + L1MEc LINE L1 1155 1279 -4834 374 272 90 107 chr4 48613870 48614271 -153714076 + L1MEc LINE L1 1414 1807 -4408 2827 242 41 25 chr4 48614319 48615400 -153712947 - L1MC/D LINE L1 -743 5403 4352 427 285 80 93 chr4 48615524 48615826 -153712521 + L2 LINE L2 3014 3311 -2 1667 254 66 17 chr4 48615974 48616446 -153711901 + MLT1D LTR MaLR 3 497 -8 317 303 56 0 chr4 48616513 48616602 -153711745 - LTR16C LTR ERVL -201 290 197 4398 242 122 16 chr4 48616676 48616947 -153711400 + L1MA9 LINE L1 7 248 -6920 2385 76 0 0 chr4 48616947 48617250 -153711097 + AluY SINE Alu 1 303 -8 4398 242 122 16 chr4 48617250 48618121 -153710226 + L1MA9 LINE L1 248 1270 -5898 1110 267 16 6 chr4 48618125 48618447 -153709900 + L1MA9 LINE L1 3170 3494 -3673 2275 237 5 99 chr4 48618455 48618517 -153709830 + L1MA9 LINE L1 5376 5442 -1725 1985 159 0 0 chr4 48618517 48618813 -153709534 + AluSx SINE Alu 1 296 -16 2275 237 5 99 chr4 48618813 48619534 -153708813 + L1MA9 LINE L1 5442 6085 -1082 672 226 5 25 chr4 48619553 48619737 -153708610 + L1P LINE L1 2352 2533 -3613 1580 199 3 3 chr4 48619737 48620024 -153708323 + AluJo SINE Alu 12 298 -14 3611 208 25 61 chr4 48620024 48621011 -153707336 + L1MA9 LINE L1 6344 7295 -38 805 281 34 34 chr4 48621864 48622188 -153706159 + L2 LINE L2 2455 2778 -536 401 304 77 17 chr4 48622188 48622369 -153705978 - MIR SINE MIR -34 228 37 219 114 0 0 chr4 48622632 48622667 -153705680 + (TC)n Simple_repeat Simple_repeat 2 36 0 235 277 119 30 chr4 48623251 48623352 -153704995 - L2 LINE L2 -1 3312 3203 251 298 0 24 chr4 48623396 48623480 -153704867 + GA-rich Low_complexity Low_complexity 3 84 0 223 295 143 38 chr4 48623919 48624024 -153704323 - MIR3 SINE MIR -4 204 89 29 94 0 0 chr4 48625551 48625636 -153702711 + AT_rich Low_complexity Low_complexity 1 85 0 354 310 65 65 chr4 48626109 48626354 -153701993 + MLT1I LTR MaLR 6 250 -159 1010 279 20 59 chr4 48626432 48626938 -153701409 - L1ME1 LINE L1 -24 6142 5657 1835 191 34 33 chr4 48626938 48627476 -153700871 - MLT2A2 LTR ERVL -12 542 1 1364 211 65 45 chr4 48627483 48628131 -153700216 - L1ME1 LINE L1 -525 5641 4993 306 250 0 0 chr4 48628169 48628249 -153700098 - L1MA10 LINE L1 -1 6333 6254 878 289 79 26 chr4 48628285 48628389 -153699958 - L1ME1 LINE L1 -1198 4948 4851 566 244 9 0 chr4 48628389 48628504 -153699843 + FLAM_A SINE Alu 1 116 -17 878 289 79 26 chr4 48628504 48628866 -153699481 - L1ME1 LINE L1 -1295 4851 4457 371 230 58 54 chr4 48628891 48629073 -153699274 - L1ME1 LINE L1 -1982 4164 3979 25 83 0 0 chr4 48629076 48629136 -153699211 + AT_rich Low_complexity Low_complexity 1 60 0 2131 187 41 0 chr4 48631596 48632008 -153696339 + MSTB1 LTR MaLR 2 430 -2 519 95 0 0 chr4 48632451 48632525 -153695822 + (TG)n Simple_repeat Simple_repeat 1 74 0 1817 167 3 0 chr4 48632994 48633293 -153695054 - AluSx SINE Alu -12 300 1 720 216 36 21 chr4 48633298 48633492 -153694855 - L1ME1 LINE L1 -2263 3883 3687 2622 176 13 40 chr4 48633539 48634068 -153694279 - MLT2B1 LTR ERVL -5 515 1 550 275 11 0 chr4 48634068 48634257 -153694090 - L1ME1 LINE L1 -2531 3615 3425 22 94 0 0 chr4 48634942 48635006 -153693341 + AT_rich Low_complexity Low_complexity 1 64 0 884 199 13 55 chr4 48635510 48635746 -153692601 + MER31B LTR ERV1 1 226 -240 1228 174 25 16 chr4 48635862 48636104 -153692243 + MER31B LTR ERV1 223 466 0 181 250 0 0 chr4 48636562 48636598 -153691749 - L2 LINE L2 -69 3203 3168 749 312 123 11 chr4 48636714 48637153 -153691194 - L2 LINE L2 -841 2473 1986 1098 139 14 43 chr4 48637153 48637362 -153690985 - L1MA8 LINE L1 -137 6154 5952 570 175 9 9 chr4 48637361 48637475 -153690872 + L1MA8 LINE L1 6160 6273 -18 * 1025 301 71 52 chr4 48637488 48638010 -153690337 - L2 LINE L2 -1296 2018 1487 2062 129 0 0 chr4 48638032 48638326 -153690021 - AluSx SINE Alu -18 294 1 1604 233 76 52 chr4 48638455 48638992 -153689355 - MLT2B3 LTR ERVL -4 550 1 250 341 39 31 chr4 48639565 48639694 -153688653 - MER91B DNA MER1_type -58 132 3 1458 225 51 34 chr4 48640248 48640715 -153687632 + MLT1D LTR MaLR 1 475 -30 234 91 0 0 chr4 48640957 48640990 -153687357 + (T)n Simple_repeat Simple_repeat 1 33 0 253 185 12 12 chr4 48641089 48641170 -153687177 + (TGAA)n Simple_repeat Simple_repeat 1 81 0 23 54 0 0 chr4 48641394 48641431 -153686916 + AT_rich Low_complexity Low_complexity 1 37 0 1085 122 6 0 chr4 48641629 48641785 -153686562 - AluYa5 SINE Alu -24 287 131 1332 193 117 9 chr4 48642013 48642339 -153686008 - MER46B DNA MER2_type 0 236 1 2611 48 0 3 chr4 48645500 48645810 -153682537 - AluY SINE Alu -2 309 1 21 0 0 0 chr4 48645812 48645833 -153682514 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr4 48646477 48646527 -153681820 + AT_rich Low_complexity Low_complexity 1 50 0 288 169 39 0 chr4 48646686 48646763 -153681584 + (TA)n Simple_repeat Simple_repeat 1 80 0 24 32 0 0 chr4 48647846 48647877 -153680470 + AT_rich Low_complexity Low_complexity 1 31 0 394 209 35 0 chr4 48648544 48648659 -153679688 - MER96B DNA MER1_type? -58 359 241 1286 191 35 51 chr4 48648763 48649078 -153679269 - AluJo SINE Alu 0 312 3 1835 179 121 67 chr4 48649260 48649363 -153678984 - L1MA9 LINE L1 -38 6274 6178 180 77 0 0 chr4 48649363 48649389 -153678958 + (TG)n Simple_repeat Simple_repeat 1 26 0 1835 179 121 67 chr4 48649389 48649871 -153678476 - L1MA9 LINE L1 -134 6178 5657 1000 150 0 0 chr4 48649875 48650035 -153678312 + L1MA9 LINE L1 5505 5664 -648 23 0 0 0 chr4 48650161 48650184 -153678163 + AT_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr4 48650497 48650542 -153677805 + AT_rich Low_complexity Low_complexity 1 45 0 225 281 0 16 chr4 48651062 48651126 -153677221 + MER117 DNA MER1_type 5 67 -130 342 337 84 12 chr4 48652542 48652708 -153675639 - LTR33 LTR ERVL -343 178 1 327 326 36 22 chr4 48653385 48653523 -153674824 - MIR SINE MIR -98 164 25 6344 83 8 3 chr4 48654896 48655963 -153672384 + L1PA8A LINE L1 5056 6127 -4 879 283 30 0 chr4 48656058 48656288 -153672059 + MIR SINE MIR 3 239 -23 903 282 163 20 chr4 48657193 48657692 -153670655 - MLT1F1 LTR MaLR 0 567 1 25 51 0 0 chr4 48657742 48657781 -153670566 + AT_rich Low_complexity Low_complexity 1 39 0 673 318 211 18 chr4 48658646 48659037 -153669310 - L2 LINE L2 -865 2449 2135 339 113 0 0 chr4 48659037 48659090 -153669257 + (CA)n Simple_repeat Simple_repeat 2 54 0 673 318 211 18 chr4 48659090 48659252 -153669095 - L2 LINE L2 -1179 2135 1789 533 313 41 38 chr4 48659392 48659526 -153668821 + L1M4 LINE L1 3146 3278 -2868 768 201 7 0 chr4 48659526 48659665 -153668682 + L1PB4 LINE L1 6004 6143 -13 533 313 41 38 chr4 48659665 48659953 -153668394 + L1M4 LINE L1 3278 3565 -2581 1091 220 20 24 chr4 48660199 48660454 -153667893 + MER119 DNA MER1_type 85 338 -245 238 147 0 0 chr4 48661433 48661467 -153666880 - MER3 DNA MER1_type -175 34 1 225 347 48 0 chr4 48662104 48662251 -153666096 + L1P1 LINE L1 5381 5534 -621 21 0 0 0 chr4 48662430 48662451 -153665896 + AT_rich Low_complexity Low_complexity 1 21 0 399 305 109 23 chr4 48663106 48663805 -153664542 + L1MC/D LINE L1 2418 3176 -2970 300 296 48 38 chr4 48663819 48664133 -153664214 + L1MC/D LINE L1 4103 4419 -1727 1075 260 183 46 chr4 48664133 48664653 -153663694 - MLT1E2 LTR MaLR -3 623 33 2033 127 140 11 chr4 48664979 48665357 -153662990 + MSTA LTR MaLR 2 428 0 5054 177 27 4 chr4 48665358 48666269 -153662078 + MSTA-int LTR MaLR 2 933 -718 1797 180 39 17 chr4 48666269 48666625 -153661722 + THE1C LTR MaLR 1 364 -11 9329 148 11 35 chr4 48666636 48668246 -153660101 + THE1C-int LTR MaLR 1 1571 -9 1370 146 158 82 chr4 48668255 48668585 -153659762 + THE1C LTR MaLR 1 375 0 4323 154 17 10 chr4 48668585 48669300 -153659047 + MSTA-int LTR MaLR 861 1580 0 1637 169 148 13 chr4 48669303 48669676 -153658671 + MSTA LTR MaLR 4 426 -2 354 331 115 32 chr4 48669724 48670220 -153658127 + L1MC/D LINE L1 4845 5381 -765 360 0 0 0 chr4 48670542 48670582 -153657765 + (TG)n Simple_repeat Simple_repeat 2 41 0 232 242 30 30 chr4 48670687 48670753 -153657594 + L1MC/D LINE L1 5467 5532 -2276 281 259 198 49 chr4 48670775 48670937 -153657410 - LTR16A LTR ERVL 0 450 265 217 333 37 44 chr4 48671815 48671950 -153656397 - MIR SINE MIR -89 173 40 1046 217 23 101 chr4 48672305 48672701 -153655646 - MLT1A1 LTR MaLR 0 365 1 958 76 0 0 chr4 48672764 48672882 -153655465 + AluY SINE Alu 1 118 -193 269 26 26 0 chr4 48672882 48672920 -153655427 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 342 336 0 18 chr4 48673141 48673254 -153655093 - MIR3 SINE MIR -31 177 67 441 273 0 48 chr4 48673544 48673585 -153654762 - MER103 DNA DNA -8 158 117 1728 197 52 50 chr4 48673585 48674007 -153654340 + MSTB LTR MaLR 4 426 0 441 273 0 48 chr4 48674007 48674130 -153654217 - MER103 DNA DNA -49 117 2 490 300 38 79 chr4 48675240 48675507 -153652840 + MIR SINE MIR 1 256 -6 1197 216 61 27 chr4 48676122 48676450 -153651897 - MER44D DNA MER2_type 0 609 1 469 238 115 30 chr4 48676563 48676798 -153651549 + Charlie5 DNA MER1_type 2369 2623 0 482 382 5 19 chr4 48677628 48677835 -153650512 + MIR3 SINE MIR 5 208 0 237 289 103 83 chr4 48677914 48678118 -153650229 - L2 LINE L2 -4 3309 3102 23 68 0 0 chr4 48678225 48678269 -153650078 + AT_rich Low_complexity Low_complexity 1 44 0 189 317 188 10 chr4 48678280 48678381 -153649966 - L2 LINE L2 -31 3282 3164 994 249 140 35 chr4 48678384 48678555 -153649792 + L1MCc LINE L1 17 169 -6254 2423 68 0 13 chr4 48678555 48678866 -153649481 + AluY SINE Alu 1 307 -4 994 249 140 35 chr4 48678866 48679116 -153649231 + L1MCc LINE L1 169 482 -5941 832 175 0 0 chr4 48679376 48679513 -153648834 + FAM SINE Alu 16 152 -33 276 100 0 0 chr4 48679524 48679564 -153648783 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 666 283 71 69 chr4 48679626 48680032 -153648315 + L1MCc LINE L1 738 1144 -5279 1700 185 27 18 chr4 48680093 48680422 -153647925 + MLT1A1 LTR MaLR 34 365 0 317 319 145 11 chr4 48680422 48680702 -153647645 + MLT1J1 LTR MaLR 126 443 -3 25 0 0 0 chr4 48681638 48681663 -153646684 + AT_rich Low_complexity Low_complexity 1 25 0 461 153 0 10 chr4 48681663 48681761 -153646586 - L1MA7 LINE L1 -6 6285 6189 4155 226 54 26 chr4 48682459 48683688 -153644659 - L1 LINE L1 -1062 5084 3822 249 33 0 0 chr4 48684716 48684746 -153643601 + (TG)n Simple_repeat Simple_repeat 2 31 0 1495 194 18 12 chr4 48684751 48685081 -153643266 - L1MB8 LINE L1 -3 6175 5844 2115 85 57 0 chr4 48685932 48686215 -153642132 - AluSx SINE Alu -13 299 1 259 302 67 20 chr4 48686544 48686693 -153641654 + MLT1J2 LTR MaLR 20 175 -275 27 49 0 0 chr4 48687358 48687399 -153640948 + AT_rich Low_complexity Low_complexity 1 41 0 2210 143 8 76 chr4 48688429 48688903 -153639444 + L1PB4 LINE L1 5715 6156 0 246 317 85 37 chr4 48689837 48690001 -153638346 - MER5B DNA MER1_type 0 178 7 383 163 59 7 chr4 48690106 48690259 -153638088 + (TA)n Simple_repeat Simple_repeat 1 161 0 184 296 74 25 chr4 48690374 48690455 -153637892 + MER5A DNA MER1_type 94 178 -11 1948 147 30 22 chr4 48690592 48690960 -153637387 + THE1C LTR MaLR 4 374 -1 212 393 0 12 chr4 48691194 48691278 -153637069 - MIR SINE MIR -155 107 25 30 0 0 0 chr4 48691546 48691576 -153636771 + AT_rich Low_complexity Low_complexity 1 30 0 5209 187 24 20 chr4 48691626 48693507 -153634840 - L1PA15 LINE L1 -1 6164 4280 486 282 21 32 chr4 48743967 48744155 -153584192 - MER101B LTR ERV1 -51 519 334 232 281 0 37 chr4 48744197 48744279 -153584068 - MER101B LTR ERV1 -479 91 13 378 0 0 0 chr4 48744996 48745038 -153583309 + (TA)n Simple_repeat Simple_repeat 2 43 0 1326 227 34 29 chr4 48745039 48745448 -153582899 + L1MC2 LINE L1 5934 6344 0 1350 248 70 22 chr4 48749495 48749895 -153578452 - LOR1b LTR ERV1 -42 419 1 1134 192 92 30 chr4 48749963 48750234 -153578113 - AluJb SINE Alu -14 288 1 214 284 126 11 chr4 48750448 48750543 -153577804 + MIR SINE MIR 124 229 -33 541 186 0 0 chr4 48751839 48751936 -153576411 - pTR5 LTR ERV1 -2282 156 60 266 147 54 88 chr4 48751936 48752029 -153576318 - LTR30 LTR ERV1 -75 627 227 2812 239 106 38 chr4 48752029 48753014 -153575333 - pTR5 LTR ERV1 -413 2025 974 280 164 0 119 chr4 48753252 48753291 -153575056 + MLT1I LTR MaLR 349 378 -31 1861 163 22 25 chr4 48753291 48753653 -153574694 + THE1B LTR MaLR 1 361 -3 280 164 0 119 chr4 48753653 48753680 -153574667 + MLT1I LTR MaLR 378 407 -2 367 154 51 0 chr4 48755439 48755517 -153572830 + MLT2B3 LTR ERVL 1 82 -371 1095 226 42 38 chr4 48755621 48755933 -153572414 + MLT2B3 LTR ERVL 216 480 -40 302 309 0 10 chr4 48755943 48756040 -153572307 + L1MC4 LINE L1 6610 6705 -1337 1130 161 134 9 chr4 48756056 48756273 -153572074 + MSTB LTR MaLR 168 411 -15 5179 244 40 23 chr4 48756273 48757947 -153570400 + ERVL LTR ERVL 82 1784 -3870 10922 202 19 8 chr4 48758621 48760663 -153567684 + ERVL LTR ERVL 1812 3875 -1889 926 210 51 0 chr4 48760667 48760843 -153567504 + MER70A LTR ERVL 204 388 -84 7935 188 31 10 chr4 48760849 48761200 -153567147 - L1PB1 LINE L1 -3 6864 6522 414 0 0 0 chr4 48761200 48761246 -153567101 + (TG)n Simple_repeat Simple_repeat 2 47 0 270 0 0 0 chr4 48761245 48761275 -153567072 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 7935 188 31 10 chr4 48761246 48762622 -153565725 - L1PB1 LINE L1 -345 6522 5086 186 43 0 0 chr4 48762622 48762645 -153565702 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 7935 188 31 10 chr4 48762645 48763692 -153564655 - L1PB1 LINE L1 -1781 5086 4063 3884 155 54 48 chr4 48763692 48764638 -153563709 + pTR5 LTR ERV1 744 2019 -419 336 219 44 53 chr4 48764638 48764752 -153563595 + LTR30 LTR ERV1 544 721 -73 1518 99 5 0 chr4 48764755 48764966 -153563381 + pTR5 LTR ERV1 181 392 -2046 11688 164 41 5 chr4 48764976 48768036 -153560311 - L1PB1 LINE L1 -2805 4057 888 254 399 7 14 chr4 48768156 48768299 -153560048 - L2 LINE L2 -3116 198 57 208 158 35 0 chr4 48768430 48768487 -153559860 + (TA)n Simple_repeat Simple_repeat 1 59 0 3383 134 23 4 chr4 48769505 48770019 -153558328 - MER1A DNA MER1_type 0 527 4 355 273 0 0 chr4 48770407 48770484 -153557863 - AluJ/FRAM SINE Alu -4 298 222 219 69 0 0 chr4 48770855 48770884 -153557463 + (CA)n Simple_repeat Simple_repeat 2 30 0 4558 108 0 42 chr4 48770896 48771635 -153556712 - L1PB1 LINE L1 -6 6145 5438 350 269 80 77 chr4 48771746 48772003 -153556344 + L1MEc LINE L1 838 946 -5271 2269 96 0 0 chr4 48772003 48772296 -153556051 + AluY SINE Alu 1 293 -18 350 269 80 77 chr4 48772296 48772697 -153555650 + L1MEc LINE L1 946 1344 -4873 343 275 93 38 chr4 48772705 48773211 -153555136 + L1MEc LINE L1 2805 3338 -2877 577 155 47 16 chr4 48773348 48773477 -153554870 + L1PA15 LINE L1 6024 6156 -9 232 320 46 39 chr4 48774657 48774810 -153553537 - MIR SINE MIR -89 173 20 26 0 0 0 chr4 48774847 48774873 -153553474 + AT_rich Low_complexity Low_complexity 1 26 0 1257 317 80 22 chr4 48775184 48776046 -153552301 + L1MEc LINE L1 34 945 -5451 975 284 78 47 chr4 48776126 48777650 -153550697 - L1ME3A LINE L1 -215 5955 4385 228 296 12 0 chr4 48778514 48778595 -153549752 + T-rich Low_complexity Low_complexity 2 83 0 22 0 0 0 chr4 48779432 48779454 -153548893 + AT_rich Low_complexity Low_complexity 1 22 0 461 347 23 0 chr4 48779660 48779833 -153548514 + MIR SINE MIR 84 260 -2 285 182 0 0 chr4 48780006 48780061 -153548286 + (CATATA)n Simple_repeat Simple_repeat 2 56 0 24 32 0 0 chr4 48780083 48780114 -153548233 + AT_rich Low_complexity Low_complexity 1 31 0 3923 112 71 31 chr4 48780226 48780351 -153547996 + L1PA16 LINE L1 5460 5579 -587 1955 139 14 0 chr4 48780351 48780646 -153547701 - AluSq SINE Alu -14 299 1 3923 112 71 31 chr4 48780646 48781200 -153547147 + L1PA16 LINE L1 5579 6166 0 274 276 171 33 chr4 48781536 48781688 -153546659 + MIR SINE MIR 90 262 0 236 234 125 16 chr4 48781736 48781800 -153546547 + L2 LINE L2 3186 3256 -16 370 49 33 0 chr4 48782874 48782935 -153545412 + (TA)n Simple_repeat Simple_repeat 2 64 0 389 296 101 17 chr4 48784067 48784246 -153544101 - L1ME3A LINE L1 -223 5947 5754 236 344 0 0 chr4 48784281 48784345 -153544002 - MIR SINE MIR -188 74 11 451 326 75 15 chr4 48784351 48785116 -153543231 - L1ME3A LINE L1 -449 5721 4906 259 240 40 0 chr4 48785263 48785338 -153543009 - L1ME3A LINE L1 -1436 4710 4633 765 221 92 31 chr4 48786207 48786402 -153541945 + MER63A DNA MER1_type 1 207 -3 293 252 76 69 chr4 48786423 48786554 -153541793 + MLT1I LTR MaLR 10 141 -268 478 244 0 67 chr4 48786748 48786839 -153541508 + MLT1I LTR MaLR 297 380 -29 2125 135 22 25 chr4 48786839 48787201 -153541146 + THE1B LTR MaLR 1 361 -3 478 244 0 67 chr4 48787201 48787228 -153541119 + MLT1I LTR MaLR 380 407 -2 21 57 0 0 chr4 48788763 48788798 -153539549 + AT_rich Low_complexity Low_complexity 1 35 0 1996 171 38 55 chr4 48788985 48789529 -153538818 + MLT2A2 LTR ERVL 1 546 -8 3490 153 38 10 chr4 48789860 48790468 -153537879 - MER4D LTR ERV1 -2 901 277 1223 150 20 47 chr4 48790568 48790821 -153537526 - MER4D LTR ERV1 -657 246 1 224 130 22 0 chr4 48792129 48792175 -153536172 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 400 281 26 26 chr4 48793486 48793600 -153534747 - MER91B DNA MER1_type -52 138 25 2199 161 28 0 chr4 48793621 48793974 -153534373 + THE1B LTR MaLR 2 364 0 364 317 97 68 chr4 48794562 48794871 -153533476 + L1M4c LINE L1 32 349 -6035 402 159 129 38 chr4 48794896 48795028 -153533319 + L1MB7 LINE L1 6034 6177 -7 1748 245 33 59 chr4 48795062 48795140 -153533207 + L1ME1 LINE L1 5486 5564 -620 1997 113 0 36 chr4 48795140 48795442 -153532905 - AluY SINE Alu -14 297 7 1748 245 33 59 chr4 48795442 48795960 -153532387 + L1ME1 LINE L1 5564 6060 -124 2222 74 0 7 chr4 48795960 48796273 -153532074 + AluY SINE Alu 1 311 0 1748 245 33 59 chr4 48796273 48796338 -153532009 + L1ME1 LINE L1 6060 6125 -59 551 236 52 29 chr4 48797197 48797371 -153530976 + LTR41 LTR ERVL 5 182 -591 1988 244 18 15 chr4 48798159 48798708 -153529639 - L1MB4 LINE L1 -7 6173 5623 4879 161 139 115 chr4 48800108 48801591 -153526756 - pTR5 LTR ERV1 0 2438 731 2260 124 0 0 chr4 48801632 48801991 -153526356 + AluSg SINE Alu 1 359 0 365 292 138 64 chr4 48803176 48803523 -153524824 + L1ME3 LINE L1 5557 5920 -242 4079 137 219 28 chr4 48803736 48804698 -153523649 + MER11B LTR ERVK 1 1236 0 29 47 0 0 chr4 48805211 48805254 -153523093 + AT_rich Low_complexity Low_complexity 1 43 0 2370 84 0 3 chr4 48805263 48805562 -153522785 + AluY SINE Alu 1 298 -13 330 287 9 26 chr4 48805567 48805682 -153522665 - MIR SINE MIR -47 215 103 3465 38 0 0 chr4 48805694 48806116 -153522231 - L1P LINE L1 -988 5158 4737 3242 16 0 0 chr4 48806116 48806487 -153521860 + L1PA2 LINE L1 5785 6155 0 186 43 0 0 chr4 48806492 48806515 -153521832 + (A)n Simple_repeat Simple_repeat 1 23 0 2047 136 3 0 chr4 48806683 48806978 -153521369 - AluSq SINE Alu -16 297 2 253 209 15 30 chr4 48807624 48807691 -153520656 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 312 327 132 24 chr4 48807704 48807909 -153520438 - HAL1b LINE L1 -1061 287 61 1776 160 0 23 chr4 48808300 48808600 -153519747 + AluSx SINE Alu 1 293 -19 184 375 36 27 chr4 48809297 48809409 -153518938 - MIR SINE MIR -135 127 15 26 30 0 0 chr4 48809650 48809683 -153518664 + AT_rich Low_complexity Low_complexity 1 33 0 239 286 14 0 chr4 48809791 48809861 -153518486 + (TA)n Simple_repeat Simple_repeat 1 71 0 325 229 24 12 chr4 48809875 48809958 -153518389 - MIR SINE MIR -97 165 82 976 217 31 18 chr4 48809959 48810052 -153518295 + MLT1D LTR MaLR 1 91 -414 2455 91 27 19 chr4 48810052 48810424 -153517923 - THE1C LTR MaLR 0 375 1 976 217 31 18 chr4 48810424 48810556 -153517791 + MLT1D LTR MaLR 91 229 -276 285 276 112 10 chr4 48810619 48810717 -153517630 + MLT1D LTR MaLR 252 359 -146 275 220 83 13 chr4 48810895 48811007 -153517340 + MLT1D LTR MaLR 349 505 0 291 278 69 0 chr4 48811133 48811205 -153517142 + MLT1D LTR MaLR 285 361 -144 380 203 61 101 chr4 48811343 48811491 -153516856 + MLT1D LTR MaLR 364 505 0 220 273 61 15 chr4 48811974 48812040 -153516307 + L2 LINE L2 3244 3312 -1 493 333 103 81 chr4 48812858 48813402 -153514945 - L1MEd LINE L1 -5561 558 3 200 350 27 73 chr4 48814299 48814668 -153513679 + L2 LINE L2 2227 2578 -736 1137 261 19 21 chr4 48814678 48815053 -153513294 - LTR37B LTR ERV1 -8 460 87 410 284 21 77 chr4 48815369 48815563 -153512784 - MER31-int LTR ERV1 -936 4000 3818 6130 211 61 66 chr4 48815632 48817283 -153511064 + MER52A LTR ERV1 1 1755 0 319 193 18 79 chr4 48817299 48817413 -153510934 - MER31-int LTR ERV1 -1194 3742 3657 22 0 0 0 chr4 48817532 48817554 -153510793 + AT_rich Low_complexity Low_complexity 1 22 0 1397 251 101 64 chr4 48817982 48818544 -153509803 - MLT1E2 LTR MaLR 0 626 44 255 97 32 16 chr4 48818743 48818805 -153509542 + A-rich Low_complexity Low_complexity 3 65 0 1536 213 148 16 chr4 48818983 48819430 -153508917 - LTR22 LTR ERVK 0 509 4 289 259 15 38 chr4 48819487 48819618 -153508729 - LTR37B LTR ERV1 -10 458 331 204 313 28 76 chr4 48819657 48819801 -153508546 + L2 LINE L2 2619 2755 -559 3639 97 31 24 chr4 48820008 48820584 -153507763 + LTR19B LTR ERV1 1 580 0 416 208 0 0 chr4 48820777 48820854 -153507493 + MLT1A2 LTR MaLR 5 81 -293 4639 114 91 121 chr4 48820861 48822290 -153506057 - pTR5 LTR ERV1 -1 2437 743 952 205 129 23 chr4 48822293 48822556 -153505791 + MLT1A2 LTR MaLR 84 374 0 1779 141 22 0 chr4 48822628 48822905 -153505442 - AluSx SINE Alu -25 287 5 22 80 0 0 chr4 48823416 48823466 -153504881 + AT_rich Low_complexity Low_complexity 1 50 0 326 258 70 38 chr4 48823834 48824020 -153504327 - L1ME LINE L1 -330 5791 5600 293 274 102 38 chr4 48824036 48824222 -153504125 + MIR SINE MIR 65 262 0 27 62 0 0 chr4 48824284 48824332 -153504015 + AT_rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr4 48824347 48824376 -153503971 + AT_rich Low_complexity Low_complexity 1 29 0 651 155 0 0 chr4 48824418 48824515 -153503832 + U6 snRNA snRNA 5 101 -6 36 53 0 0 chr4 48824515 48824572 -153503775 + AT_rich Low_complexity Low_complexity 1 57 0 22 70 0 0 chr4 48824700 48824743 -153503604 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr4 48824807 48824840 -153503507 + AT_rich Low_complexity Low_complexity 1 33 0 277 327 9 9 chr4 48824988 48825095 -153503252 + MLT1L LTR MaLR 128 234 -381 23 54 0 0 chr4 48825847 48825884 -153502463 + AT_rich Low_complexity Low_complexity 1 37 0 27 100 0 0 chr4 48825999 48826089 -153502258 + AT_rich Low_complexity Low_complexity 1 90 0 1408 210 37 30 chr4 48826497 48826901 -153501446 - L1MC2 LINE L1 0 6344 5938 396 0 0 0 chr4 48826906 48826950 -153501397 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 257 333 36 30 chr4 48828949 48829117 -153499230 - MIR SINE MIR 0 262 94 3537 328 100 20 chr4 48829244 48831118 -153497229 + L2 LINE L2 949 2973 -341 22 0 0 0 chr4 48831950 48831972 -153496375 + AT_rich Low_complexity Low_complexity 1 22 0 1959 116 55 3 chr4 48832824 48833117 -153495230 - AluSq SINE Alu -5 308 1 21 0 0 0 chr4 48833674 48833695 -153494652 + AT_rich Low_complexity Low_complexity 1 21 0 203 267 0 0 chr4 48833762 48833807 -153494540 + T-rich Low_complexity Low_complexity 5 49 0 24 32 0 0 chr4 48834121 48834152 -153494195 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 48834467 48834491 -153493856 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 48834709 48834734 -153493613 + AT_rich Low_complexity Low_complexity 1 25 0 565 225 267 0 chr4 48835140 48835376 -153492971 - MER33 DNA MER1_type -22 302 4 321 280 93 8 chr4 48835994 48836112 -153492235 + MIR SINE MIR 103 230 -32 306 73 0 0 chr4 48836271 48836312 -153492035 + (CA)n Simple_repeat Simple_repeat 2 42 0 287 339 37 32 chr4 48836830 48836967 -153491380 - Charlie2 DNA MER1_type -2312 470 330 1512 184 87 0 chr4 48836967 48837233 -153491114 + AluJb SINE Alu 6 294 -18 287 339 37 32 chr4 48837233 48837284 -153491063 - Charlie2 DNA MER1_type -2452 330 281 339 316 124 18 chr4 48837529 48837754 -153490593 - MIR SINE MIR -3 259 11 33 0 0 0 chr4 48837774 48837807 -153490540 + AT_rich Low_complexity Low_complexity 1 33 0 1491 131 7 25 chr4 48837807 48838082 -153490265 - L1MA2 LINE L1 0 6304 6035 1294 196 29 7 chr4 48838235 48838515 -153489832 - L1MA9 LINE L1 -38 6274 5989 406 253 8 48 chr4 48838555 48838665 -153489682 + L1MC4a LINE L1 6627 6707 -1101 1669 186 8 51 chr4 48838665 48839057 -153489290 - THE1C LTR MaLR 0 375 1 406 253 8 48 chr4 48839057 48839096 -153489251 + L1MC4a LINE L1 6707 6746 -1062 782 273 15 8 chr4 48839252 48839519 -153488828 + L1ME2 LINE L1 651 919 -5477 472 286 140 60 chr4 48839639 48840359 -153487988 + L1ME2 LINE L1 5204 6018 -215 2223 182 9 23 chr4 48840359 48840799 -153487548 - Tigger2a DNA MER2_type 0 434 1 472 286 140 60 chr4 48840799 48841034 -153487313 + L1ME2 LINE L1 6018 6233 0 21 0 0 0 chr4 48841596 48841617 -153486730 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr4 48841775 48841801 -153486546 + AT_rich Low_complexity Low_complexity 1 26 0 6236 103 72 25 chr4 48842007 48843030 -153485317 - MER11C LTR ERVK 0 1071 1 379 304 82 82 chr4 48843663 48843920 -153484427 + L2 LINE L2 2626 2882 -432 282 216 67 75 chr4 48843921 48844055 -153484292 - L2 LINE L2 -76 3237 3105 30 100 0 0 chr4 48844726 48844826 -153483521 + AT_rich Low_complexity Low_complexity 1 100 0 23 33 0 0 chr4 48845858 48845888 -153482459 + AT_rich Low_complexity Low_complexity 1 30 0 815 263 48 67 chr4 48846228 48846703 -153481644 + LTR37B LTR ERV1 1 466 -2 26 30 0 0 chr4 48847537 48847570 -153480777 + AT_rich Low_complexity Low_complexity 1 33 0 3504 176 18 15 chr4 48847933 48848604 -153479743 - L1PB4 LINE L1 -47 6109 5437 396 331 76 0 chr4 48848789 48848961 -153479386 - MIR SINE MIR -9 253 69 180 163 47 47 chr4 48849576 48849619 -153478728 + L2 LINE L2 3271 3313 0 23 54 0 0 chr4 48849803 48849840 -153478507 + AT_rich Low_complexity Low_complexity 1 37 0 10562 220 46 18 chr4 48850337 48851869 -153476478 - L1MB1 LINE L1 -1 6167 4680 1981 105 0 60 chr4 48851869 48852183 -153476164 + AluY SINE Alu 1 295 -16 10562 220 46 18 chr4 48852183 48854397 -153473950 - L1MB1 LINE L1 -1488 4680 2303 1680 165 7 26 chr4 48854397 48854700 -153473647 + AluJb SINE Alu 7 303 -9 10562 220 46 18 chr4 48854700 48854898 -153473449 - L1MB1 LINE L1 -3865 2303 2112 3749 136 80 13 chr4 48854905 48855584 -153472763 - L1PB1 LINE L1 0 6151 5428 198 71 0 0 chr4 48855585 48855613 -153472734 + (T)n Simple_repeat Simple_repeat 1 28 0 6926 18 1 0 chr4 48855672 48856471 -153471876 - L1PA2 LINE L1 0 6155 5356 317 24 0 0 chr4 48856467 48856509 -153471838 + L1P LINE L1 5088 5129 -1017 * 9556 220 8 10 chr4 48856657 48859136 -153469211 - L1PB1 LINE L1 -725 5426 2955 796 282 87 49 chr4 48859145 48859677 -153468670 - L1MEc LINE L1 -3429 2786 2235 252 176 29 15 chr4 48859694 48859762 -153468585 + (TA)n Simple_repeat Simple_repeat 2 70 0 236 205 26 8 chr4 48859781 48859898 -153468449 + (TA)n Simple_repeat Simple_repeat 1 119 0 210 118 0 0 chr4 48859902 48859936 -153468411 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1690 258 68 23 chr4 48859942 48860672 -153467675 - L1MEc LINE L1 -4149 2247 1485 21 36 0 0 chr4 48860889 48860917 -153467430 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr4 48861855 48861892 -153466455 + AT_rich Low_complexity Low_complexity 1 37 0 797 216 0 33 chr4 48862543 48862724 -153465623 + FRAM SINE Alu 2 176 0 1999 101 10 62 chr4 48862890 48863198 -153465149 - AluSx SINE Alu -20 292 1 2643 192 43 46 chr4 48863245 48863976 -153464371 - LTR1 LTR ERV1 -2 820 100 343 135 0 0 chr4 48863979 48864031 -153464316 - L1P LINE L1 -1976 4170 4119 1646 104 2 5 chr4 48864031 48864276 -153464071 - LTR12 LTR ERV1 -13 701 355 366 213 0 0 chr4 48864278 48864353 -153463994 - LTR30 LTR ERV1 -104 618 544 455 211 157 12 chr4 48864354 48864520 -153463827 - LTR12 LTR ERV1 -424 290 101 742 94 9 0 chr4 48864626 48864732 -153463615 - L1P LINE L1 -2064 4082 3976 499 191 0 0 chr4 48864941 48865025 -153463322 - L1M3 LINE L1 -394 5777 5694 23 92 0 0 chr4 48865658 48865723 -153462624 + AT_rich Low_complexity Low_complexity 1 65 0 1206 258 19 30 chr4 48865734 48866103 -153462244 - MLT1A2 LTR MaLR -7 367 3 202 346 28 19 chr4 48868052 48868159 -153460188 - MER5A DNA MER1_type -75 114 7 593 226 102 0 chr4 48868204 48868341 -153460006 - FRAM SINE Alu -25 151 1 1960 95 3 52 chr4 48868441 48868782 -153459565 + AluY SINE Alu 3 311 0 24 0 0 0 chr4 48869015 48869039 -153459308 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 48869740 48869764 -153458583 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr4 48870075 48870101 -153458246 + AT_rich Low_complexity Low_complexity 1 26 0 1101 153 0 0 chr4 48870291 48870454 -153457893 - AluSg/x SINE Alu -18 294 132 440 357 24 45 chr4 48870588 48870879 -153457468 + LTR16B LTR ERVL 39 323 -141 21 71 0 0 chr4 48871431 48871473 -153456874 + AT_rich Low_complexity Low_complexity 1 42 0 26 64 0 0 chr4 48871522 48871569 -153456778 + AT_rich Low_complexity Low_complexity 1 47 0 1762 156 7 30 chr4 48871991 48872293 -153456054 + AluSx SINE Alu 1 295 -17 23 54 0 0 chr4 48872461 48872498 -153455849 + AT_rich Low_complexity Low_complexity 1 37 0 320 287 104 9 chr4 48872811 48872926 -153455421 - MIR SINE MIR -13 249 124 1314 155 92 30 chr4 48873139 48873410 -153454937 + AluJb SINE Alu 1 288 -24 1809 188 70 22 chr4 48873478 48873878 -153454469 + LOR1b LTR ERV1 1 419 -42 22 56 0 0 chr4 48874027 48874063 -153454284 + AT_rich Low_complexity Low_complexity 1 36 0 230 132 0 113 chr4 48874514 48874567 -153453780 + L1MC3 LINE L1 6706 6752 -1033 5094 182 92 37 chr4 48874567 48875783 -153452564 + pTR5 LTR ERV1 743 2025 -413 319 125 54 76 chr4 48875783 48875875 -153452472 + LTR30 LTR ERV1 227 302 -75 2186 139 0 6 chr4 48875880 48876217 -153452130 + pTR5 LTR ERV1 168 502 -1936 * 31492 97 7 6 chr4 48876194 48880603 -153447744 + HERV9 LTR ERV1 17 4428 -3971 1054 153 0 0 chr4 48880610 48880796 -153447551 + LTR12 LTR ERV1 101 277 -437 295 273 10 0 chr4 48880796 48880895 -153447452 + LTR30 LTR ERV1 544 643 -79 1485 123 0 0 chr4 48880895 48881107 -153447240 + LTR12 LTR ERV1 480 691 -23 2338 190 85 11 chr4 48881117 48881926 -153446421 + L1MC3 LINE L1 6746 7766 -19 1906 145 6 28 chr4 48882037 48882369 -153445978 + AluSx SINE Alu 1 325 0 215 440 0 0 chr4 48882424 48882508 -153445839 - L2 LINE L2 0 3272 3189 242 370 125 18 chr4 48882552 48882776 -153445571 + L2 LINE L2 2846 3093 -220 219 203 145 29 chr4 48883229 48883298 -153445049 - MIR SINE MIR -121 141 65 276 247 49 0 chr4 48884594 48884675 -153443672 + L1MA6 LINE L1 3036 3120 -3026 2962 189 26 4 chr4 48884687 48885820 -153442527 + L1MA6 LINE L1 4691 5848 -452 322 310 99 21 chr4 48887969 48888211 -153440136 + L1M4 LINE L1 5287 5547 -627 236 222 14 0 chr4 48888634 48888706 -153439641 + CT-rich Low_complexity Low_complexity 1 73 0 23 0 0 0 chr4 48888982 48889005 -153439342 + AT_rich Low_complexity Low_complexity 1 23 0 334 92 15 15 chr4 48889060 48889125 -153439222 + (CA)n Simple_repeat Simple_repeat 2 66 0 317 264 0 0 chr4 48889556 48889662 -153438685 + (TA)n Simple_repeat Simple_repeat 1 106 0 21 71 0 0 chr4 48889837 48889879 -153438468 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr4 48894118 48894143 -153434204 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr4 48899500 48899535 -153428812 + AT_rich Low_complexity Low_complexity 1 35 0 388 278 0 0 chr4 48899747 48899819 -153428528 + Tigger3(Golem) DNA MER2_type 9 80 -2949 515 208 10 0 chr4 48899947 48900043 -153428304 + Tigger3(Golem) DNA MER2_type 2929 3025 -4 339 25 0 0 chr4 48900085 48900125 -153428222 + (TG)n Simple_repeat Simple_repeat 1 40 0 1970 189 8 34 chr4 48900144 48900579 -153427768 + THE1-int LTR MaLR 635 1135 -516 2618 111 3 0 chr4 48905308 48905685 -153422662 + L1PA13 LINE L1 5783 6160 -3 261 278 113 46 chr4 48905723 48905874 -153422473 + LTR37B LTR ERV1 4 164 -304 371 267 57 29 chr4 48905988 48906198 -153422149 + LTR37B LTR ERV1 201 416 -52 26 82 0 0 chr4 48909388 48909449 -153418898 + AT_rich Low_complexity Low_complexity 1 61 0 21 0 0 0 chr4 48909462 48909483 -153418864 + AT_rich Low_complexity Low_complexity 1 21 0 229 185 12 12 chr4 48909484 48909565 -153418782 + (TTTAA)n Simple_repeat Simple_repeat 5 85 0 288 0 0 0 chr4 48921864 48921896 -153406451 + (CA)n Simple_repeat Simple_repeat 2 33 0 39 60 0 0 chr4 48922331 48922398 -153405949 + AT_rich Low_complexity Low_complexity 1 67 0 367 238 0 28 chr4 48922609 48922752 -153405595 + (CATATA)n Simple_repeat Simple_repeat 3 141 0 1430 223 0 10 chr4 48923085 48923386 -153404961 + AluJo SINE Alu 3 300 -12 276 30 0 0 chr4 48923389 48923422 -153404925 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 2948 152 27 10 chr4 48923524 48925598 -153402749 - L1PBa LINE L1 -3408 3454 1297 198 0 0 0 chr4 48927648 48927670 -153400677 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 747 307 64 3 chr4 48928226 48928509 -153399838 + MLT1H LTR MaLR 5 304 -245 210 32 0 32 chr4 48928652 48928683 -153399664 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 734 104 43 18 chr4 48928694 48928857 -153399490 + CT-rich Low_complexity Low_complexity 2 168 0 1934 163 14 20 chr4 48929640 48929989 -153398358 + MER7A DNA MER2_type 2 346 0 1393 123 0 18 chr4 48930174 48930402 -153397945 - L1PA8 LINE L1 -10 6162 5939 436 276 49 16 chr4 48930406 48930529 -153397818 + MIR SINE MIR 24 150 -112 1199 121 12 0 chr4 48930698 48930864 -153397483 - AluSg/x SINE Alu -16 296 129 1734 158 3 7 chr4 48930867 48931165 -153397182 - AluYb8 SINE Alu 0 318 22 604 150 0 17 chr4 48931589 48931709 -153396638 + (GGAA)n Simple_repeat Simple_repeat 1 118 0 2311 203 34 28 chr4 48931753 48932427 -153395920 - LTR27 LTR ERV1 -1 635 3 2122 130 61 9 chr4 48932733 48933079 -153395268 - THE1B LTR MaLR 0 364 1 10701 100 21 1 chr4 48933079 48934628 -153393719 - THE1B-int LTR MaLR 0 1580 2 2212 133 34 11 chr4 48934629 48934983 -153393364 - THE1B LTR MaLR 0 364 3 24 0 0 0 chr4 48935934 48935958 -153392389 + AT_rich Low_complexity Low_complexity 1 24 0 204 111 0 0 chr4 48936033 48936069 -153392278 + (TA)n Simple_repeat Simple_repeat 2 37 0 350 143 26 65 chr4 48936108 48936185 -153392162 + Tigger2 DNA MER2_type 1 74 -2644 * 1766 172 32 98 chr4 48936172 48936458 -153391889 + Tigger2 DNA MER2_type 2275 2519 -199 2029 150 0 0 chr4 48936458 48936758 -153391589 + AluSq SINE Alu 1 300 -13 1766 172 32 98 chr4 48936758 48936943 -153391404 + Tigger2 DNA MER2_type 2519 2715 -3 252 59 0 0 chr4 48936945 48936979 -153391368 + (TG)n Simple_repeat Simple_repeat 2 35 0 255 234 53 31 chr4 48937576 48937775 -153390572 + L1MEc LINE L1 906 1088 -5031 1958 104 61 0 chr4 48937799 48938078 -153390269 + AluSx SINE Alu 10 305 -7 484 319 60 52 chr4 48938228 48938595 -153389752 + L1MEc LINE L1 1096 1665 -4645 39 38 0 0 chr4 48938931 48938984 -153389363 + AT_rich Low_complexity Low_complexity 1 53 0 426 353 84 21 chr4 48939361 48939599 -153388748 + MIR SINE MIR 10 262 0 21 0 0 0 chr4 48939810 48939831 -153388516 + AT_rich Low_complexity Low_complexity 1 21 0 1349 267 167 35 chr4 48940019 48940769 -153387578 + L2 LINE L2 2215 3068 -245 182 333 39 0 chr4 48940896 48940947 -153387400 + L2 LINE L2 3216 3268 -4 207 0 0 0 chr4 48940963 48940986 -153387361 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 969 110 0 0 chr4 48940985 48941130 -153387217 + (TA)n Simple_repeat Simple_repeat 1 145 0 561 103 37 0 chr4 48941565 48941672 -153386675 + (TAGA)n Simple_repeat Simple_repeat 4 114 0 1080 231 97 59 chr4 48942520 48943064 -153385283 + MER34B LTR ERV1 11 565 0 2180 108 3 3 chr4 48943318 48943625 -153384722 - AluSg SINE Alu -3 307 1 405 344 35 40 chr4 48944130 48944212 -153384135 + MIR SINE MIR 35 116 -146 2080 148 0 0 chr4 48944212 48944517 -153383830 - AluSx SINE Alu -7 305 1 405 344 35 40 chr4 48944517 48944661 -153383686 + MIR SINE MIR 116 260 -2 1549 173 100 0 chr4 48945094 48945424 -153382923 + MLT1A1 LTR MaLR 3 365 0 724 466 12 15 chr4 48947116 48947457 -153380890 + L1M4 LINE L1 5284 5623 -561 1050 258 31 11 chr4 48949746 48950167 -153378180 + MSTD LTR MaLR 24 396 0 24 85 0 0 chr4 48950942 48951001 -153377346 + AT_rich Low_complexity Low_complexity 1 59 0 6430 84 2 7 chr4 48951399 48952607 -153375740 + L1PA7 LINE L1 4935 6138 -16 240 161 0 65 chr4 48952725 48952787 -153375560 + L1MDa LINE L1 2579 2636 -3904 242 329 55 9 chr4 48953179 48953398 -153374949 - L1MEc LINE L1 -4637 1673 1445 398 292 68 28 chr4 48953544 48953794 -153374553 - L1MEc LINE L1 -4867 1252 993 232 188 47 0 chr4 48954000 48954064 -153374283 + A-rich Low_complexity Low_complexity 5 71 0 34 24 0 0 chr4 48954132 48954173 -153374174 + AT_rich Low_complexity Low_complexity 1 41 0 235 182 26 0 chr4 48954311 48954388 -153373959 + (TA)n Simple_repeat Simple_repeat 1 79 0 210 71 0 0 chr4 48954387 48954415 -153373932 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 2417 204 19 34 chr4 48954421 48954956 -153373391 - MER68 LTR ERV1 0 562 36 2713 105 3 5 chr4 48956060 48956450 -153371897 + L1PA10 LINE L1 5777 6165 -3 767 325 44 5 chr4 48956531 48956959 -153371388 - L1M4 LINE L1 -1572 4574 4130 322 234 21 11 chr4 48956992 48957086 -153371261 - L1M4 LINE L1 -2457 3689 3595 557 373 55 21 chr4 48957165 48957734 -153370613 + L1MEc LINE L1 92 679 -5717 295 192 0 0 chr4 48957736 48957788 -153370559 - Alu SINE Alu -250 52 1 21 36 0 0 chr4 48957825 48957853 -153370494 + AT_rich Low_complexity Low_complexity 1 28 0 2734 318 81 16 chr4 48957999 48959210 -153369137 + L1M3de LINE L1 4 1352 -5301 1963 242 15 17 chr4 48959218 48959739 -153368608 + L1M3de LINE L1 1618 2137 -4516 9038 186 23 4 chr4 48959756 48962424 -153365923 + L1PA15 LINE L1 3431 6132 -33 2343 165 69 22 chr4 48962412 48962903 -153365444 + L1MA5 LINE L1 5781 6294 -6 * 979 175 12 0 chr4 48963181 48963347 -153365000 - AluSg/x SINE Alu -16 294 127 2330 63 3 7 chr4 48963350 48963652 -153364695 - AluYb8 SINE Alu 0 318 18 343 221 13 26 chr4 48964181 48964258 -153364089 - MIR SINE MIR -111 151 76 266 87 0 0 chr4 48964301 48964347 -153364000 - LTR66 LTR ERVL -171 439 394 291 306 38 51 chr4 48965617 48965774 -153362573 + MIR3 SINE MIR 46 200 -8 542 173 31 24 chr4 48966514 48966641 -153361706 - Looper DNA T2_type 0 1558 1431 1994 177 46 7 chr4 48966663 48967098 -153361249 - L1MD1 LINE L1 -8 6234 5783 245 182 0 0 chr4 48967212 48967256 -153361091 - L1MC/D LINE L1 -419 5823 5780 1642 228 40 69 chr4 48967291 48967525 -153360822 - L1MC/D LINE L1 -569 5673 5434 192 97 0 0 chr4 48967525 48967556 -153360791 + (TG)n Simple_repeat Simple_repeat 2 32 0 1642 228 40 69 chr4 48967556 48968358 -153359989 - L1MC/D LINE L1 -808 5434 4849 3659 236 42 61 chr4 48968382 48968599 -153359748 + L1MCb LINE L1 2 222 -6342 1902 160 0 0 chr4 48968599 48968916 -153359431 - AluSx SINE Alu 0 317 1 3659 236 42 61 chr4 48968916 48970698 -153357649 + L1MCb LINE L1 222 2055 -4509 * 5996 204 36 63 chr4 48970695 48972353 -153355994 + L1MC3 LINE L1 6163 7774 -11 966 258 37 61 chr4 48972367 48972828 -153355519 - L1MC/D LINE L1 -1287 4859 4410 1394 219 21 0 chr4 48972830 48973113 -153355234 - AluJb SINE Alu -7 305 17 1947 260 23 19 chr4 48973136 48973786 -153354561 - L1MC/D LINE L1 -1741 4405 3753 224 262 16 16 chr4 48974052 48974113 -153354234 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 1954 120 21 52 chr4 48974113 48974495 -153353852 + L1PB2 LINE L1 5782 6151 0 7880 12 0 0 chr4 48975119 48976293 -153352054 + L1PA2 LINE L1 4981 6152 -3 202 302 20 7 chr4 48977386 48977535 -153350812 + (TA)n Simple_repeat Simple_repeat 2 152 0 373 391 78 9 chr4 48977567 48977902 -153350445 + L2 LINE L2 2396 2753 -561 867 317 18 9 chr4 48978071 48978399 -153349948 - LTR16A LTR ERVL -8 442 112 207 407 7 27 chr4 48978478 48978628 -153349719 + L2 LINE L2 2935 3081 -191 219 336 73 36 chr4 48978705 48978815 -153349532 + L2 LINE L2 3200 3313 0 31 68 0 0 chr4 48980644 48980703 -153347644 + AT_rich Low_complexity Low_complexity 1 59 0 12631 206 48 12 chr4 48981041 48984259 -153344088 - L1PB1 LINE L1 0 6867 3765 422 37 0 0 chr4 48984259 48984313 -153344034 - L1PA3 LINE L1 -3 6152 6099 12631 206 48 12 chr4 48984313 48987564 -153340783 - L1PB1 LINE L1 -3102 3765 6 1374 181 107 15 chr4 48987575 48987846 -153340501 - AluJb SINE Alu -16 296 1 228 266 106 18 chr4 48987895 48988008 -153340339 - MIR SINE MIR -29 233 111 1108 249 94 26 chr4 48988713 48989055 -153339292 + MLT1A1 LTR MaLR 1 365 0 242 381 21 0 chr4 48989400 48989497 -153338850 - L2 LINE L2 -188 3084 2986 2663 92 0 0 chr4 48990088 48990456 -153337891 - L1P LINE L1 -861 5285 4918 4376 94 0 0 chr4 48990456 48991058 -153337289 + L1PA7 LINE L1 5552 6154 0 26 0 0 0 chr4 48991058 48991084 -153337263 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr4 48991153 48991188 -153337159 + AT_rich Low_complexity Low_complexity 1 35 0 255 278 109 43 chr4 48992014 48992185 -153336162 + MIR3 SINE MIR 8 196 -12 1766 203 65 30 chr4 48992445 48992908 -153335439 + MLT1D LTR MaLR 27 505 0 215 315 136 25 chr4 48994151 48994313 -153334034 - MIR SINE MIR -14 248 69 732 231 0 25 chr4 48995409 48995569 -153332778 - FRAM SINE Alu -20 156 1 2347 114 22 6 chr4 48996054 48996412 -153331935 + THE1B LTR MaLR 1 364 0 1975 136 0 3 chr4 48996704 48996998 -153331349 + AluSc SINE Alu 1 293 -16 267 315 19 9 chr4 48997546 48997654 -153330693 + MIR3 SINE MIR 99 207 -1 1701 209 50 92 chr4 49000202 49000780 -153327567 + MLT2B3 LTR ERVL 1 554 0 1282 195 0 88 chr4 49000793 49001121 -153327226 - AluJo SINE Alu -1 301 3 9138 182 32 9 chr4 49001387 49001746 -153326601 - L1PB1 LINE L1 0 6151 5802 342 0 0 0 chr4 49001746 49001784 -153326563 + (TA)n Simple_repeat Simple_repeat 2 39 0 9138 182 32 9 chr4 49001784 49003071 -153325276 - L1PB1 LINE L1 -349 5802 4546 1845 151 0 36 chr4 49003071 49003376 -153324971 - AluSg SINE Alu -14 296 3 9138 182 32 9 chr4 49003376 49004734 -153323613 - L1PB1 LINE L1 -1605 4546 3073 22 0 0 0 chr4 49004900 49004922 -153323425 + AT_rich Low_complexity Low_complexity 1 22 0 2146 126 46 5 chr4 49005241 49005614 -153322733 - L1MA5A LINE L1 -3 6294 5907 1334 297 130 19 chr4 49005614 49006230 -153322117 + L2 LINE L2 1758 2441 -873 208 363 59 49 chr4 49006507 49006609 -153321738 - L2 LINE L2 -8 3264 3162 28 48 0 0 chr4 49007708 49007750 -153320597 + AT_rich Low_complexity Low_complexity 1 42 0 530 208 0 62 chr4 49010106 49010236 -153318111 - MLT1E LTR MaLR 0 593 472 837 244 139 96 chr4 49010507 49011016 -153317331 - MLT1E1 LTR MaLR -122 532 2 7267 85 11 1 chr4 49012650 49013663 -153314684 + L1P LINE L1 4058 5080 -1066 6564 77 17 0 chr4 49013663 49014836 -153313511 + L1PA6 LINE L1 4966 6152 -2 489 234 116 75 chr4 49014836 49015207 -153313140 - HsTC2 DNA Tc2 -67 1831 1270 834 275 166 18 chr4 49015211 49015651 -153312696 - HsTC2 DNA Tc2 -1391 507 3 3535 165 117 7 chr4 49015795 49016539 -153311808 - LTR1B LTR ERV1 0 826 1 2542 133 33 5 chr4 49016669 49016878 -153311469 + L1P5 LINE L1 5353 5555 -599 2481 62 3 3 chr4 49016878 49017185 -153311162 - AluY SINE Alu -4 307 1 2542 133 33 5 chr4 49017185 49017402 -153310945 + L1P5 LINE L1 5555 5791 -363 398 270 77 52 chr4 49017595 49017958 -153310389 + L1M4 LINE L1 2663 3034 -3112 2626 153 11 42 chr4 49017961 49018312 -153310035 - L1 LINE L1 -1482 4664 4335 2078 116 0 31 chr4 49018312 49018632 -153309715 - AluY SINE Alu -1 310 1 2626 153 11 42 chr4 49018632 49018829 -153309518 - L1 LINE L1 -1811 4335 4133 313 260 110 8 chr4 49018924 49019051 -153309296 + L1M4 LINE L1 3179 3318 -2828 643 306 81 30 chr4 49019747 49020080 -153308267 - LTR33 LTR ERVL 0 521 172 526 242 108 38 chr4 49020279 49020465 -153307882 + MER58A DNA MER1_type 11 209 -15 221 253 0 13 chr4 49022094 49022173 -153306174 + A-rich Low_complexity Low_complexity 5 82 0 25 75 0 0 chr4 49022454 49022507 -153305840 + AT_rich Low_complexity Low_complexity 1 53 0 24 32 0 0 chr4 49022649 49022680 -153305667 + AT_rich Low_complexity Low_complexity 1 31 0 13220 45 3 4 chr4 49022680 49025108 -153303239 - L1PA5 LINE L1 -1 6153 3722 243 332 49 34 chr4 49025433 49025638 -153302709 + L1MC/D LINE L1 5703 5910 -1898 386 43 58 0 chr4 49025724 49025793 -153302554 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 184 320 20 20 chr4 49026177 49026277 -153302070 + MER5A DNA MER1_type 7 106 -83 376 301 43 84 chr4 49026455 49026777 -153301570 - MLT1I LTR MaLR -17 392 84 25 0 0 0 chr4 49026906 49026931 -153301416 + AT_rich Low_complexity Low_complexity 1 25 0 242 203 0 29 chr4 49027038 49027107 -153301240 + CT-rich Low_complexity Low_complexity 1 67 0 510 289 96 15 chr4 49027257 49027454 -153300893 + MIR SINE MIR 37 249 -13 21 57 0 0 chr4 49027853 49027888 -153300459 + AT_rich Low_complexity Low_complexity 1 35 0 2115 128 0 0 chr4 49030073 49030370 -153297977 - AluSx SINE Alu -11 301 5 554 243 81 67 chr4 49030472 49030682 -153297665 + MLT1I LTR MaLR 195 407 -2 228 67 0 0 chr4 49030745 49030775 -153297572 + (TA)n Simple_repeat Simple_repeat 2 31 0 18449 47 0 1 chr4 49030821 49033905 -153294442 + L1PA4 LINE L1 3060 6147 -8 1759 200 107 69 chr4 49033940 49034432 -153293915 + MLT2B3 LTR ERVL 1 514 -40 624 73 9 27 chr4 49034432 49034542 -153293805 + (TCTA)n Simple_repeat Simple_repeat 3 110 0 1759 200 107 69 chr4 49034542 49034553 -153293794 + MLT2B3 LTR ERVL 514 523 -31 1281 178 22 30 chr4 49035945 49036214 -153292133 - AluJo SINE Alu -9 303 37 418 351 181 14 chr4 49037216 49037714 -153290633 - L1MC4a LINE L1 -1901 5907 5327 21 82 0 0 chr4 49037775 49037824 -153290523 + AT_rich Low_complexity Low_complexity 1 49 0 316 276 57 24 chr4 49037891 49038014 -153290333 - L1MC5 LINE L1 -44 7917 7791 21 0 0 0 chr4 49038580 49038601 -153289746 + AT_rich Low_complexity Low_complexity 1 21 0 10918 213 51 13 chr4 49038645 49038761 -153289586 + L1MA4A LINE L1 2314 2424 -3879 336 102 0 0 chr4 49038761 49038810 -153289537 + (TA)n Simple_repeat Simple_repeat 2 50 0 10918 213 51 13 chr4 49038810 49042372 -153285975 + L1MA4A LINE L1 2424 6121 -182 338 250 11 0 chr4 49042376 49042468 -153285879 + L1MA4A LINE L1 6188 6280 -23 35 63 0 0 chr4 49043324 49043387 -153284960 + AT_rich Low_complexity Low_complexity 1 63 0 902 155 11 46 chr4 49044462 49044636 -153283711 + FRAM SINE Alu 1 160 -16 555 78 0 0 chr4 49044636 49044713 -153283634 + (GGAA)n Simple_repeat Simple_repeat 1 77 0 370 299 56 14 chr4 49044777 49044921 -153283426 - MIR SINE MIR -16 246 97 21 0 0 0 chr4 49045360 49045381 -153282966 + AT_rich Low_complexity Low_complexity 1 21 0 790 202 48 40 chr4 49045493 49045745 -153282602 - PABL_B LTR ERV1 0 667 414 229 349 16 16 chr4 49045905 49046031 -153282316 - PABL_A LTR ERV1 -463 197 72 1072 162 94 42 chr4 49046592 49046723 -153281624 + MER33 DNA MER1_type 1 124 -2461 1886 133 10 7 chr4 49046723 49047024 -153281323 + AluSx SINE Alu 1 302 -10 1072 162 94 42 chr4 49047024 49047200 -153281147 + MER33 DNA MER1_type 124 324 0 1335 210 3 46 chr4 49047221 49047545 -153280802 - L1MA10 LINE L1 -8 6326 6017 2940 56 3 0 chr4 49047591 49047964 -153280383 - L1PA7 LINE L1 -14 6140 5767 8141 258 75 19 chr4 49048297 49052206 -153276141 - L1MC1 LINE L1 -431 6320 2195 1453 127 4 21 chr4 49052232 49052468 -153275879 - Tigger5 DNA MER2_type -3 2320 2089 1005 216 133 31 chr4 49052474 49052745 -153275602 - L1MC1 LINE L1 -4851 1194 1048 1559 179 82 20 chr4 49052745 49053098 -153275249 - THE1C LTR MaLR 0 375 1 1005 216 133 31 chr4 49053098 49053224 -153275123 - L1MC1 LINE L1 -4997 1048 936 290 307 159 0 chr4 49053284 49053447 -153274900 - MIR SINE MIR -1 261 73 31 68 0 0 chr4 49053692 49053751 -153274596 + AT_rich Low_complexity Low_complexity 1 59 0 28 0 0 0 chr4 49054081 49054109 -153274238 + AT_rich Low_complexity Low_complexity 1 28 0 28003 37 2 0 chr4 49054576 49058819 -153269528 + L1PA3 LINE L1 1905 6155 0 22 35 0 0 chr4 49059056 49059085 -153269262 + AT_rich Low_complexity Low_complexity 1 29 0 1911 143 0 0 chr4 49059322 49059627 -153268720 + AluSg SINE Alu 5 309 0 21 0 0 0 chr4 49060108 49060129 -153268218 + AT_rich Low_complexity Low_complexity 1 21 0 210 37 0 0 chr4 49060412 49060439 -153267908 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 321 75 0 0 chr4 49060737 49060777 -153267570 - MER85 DNA T2_type -1 138 99 733 322 45 54 chr4 49060837 49061278 -153267069 + MLT1J LTR MaLR 1 437 -74 264 301 59 35 chr4 49061371 49061627 -153266720 + L1MC/D LINE L1 5257 5518 -815 2206 240 58 16 chr4 49061732 49062423 -153265924 + L1MC4a LINE L1 6856 7575 -233 26 64 0 0 chr4 49063435 49063482 -153264865 + AT_rich Low_complexity Low_complexity 1 47 0 2400 108 6 0 chr4 49063483 49063844 -153264503 - L1PB1 LINE L1 -4 6147 5785 235 182 76 15 chr4 49063868 49063934 -153264413 - L1MC4 LINE L1 -1339 6703 6634 * 531 122 12 0 chr4 49063907 49063989 -153264358 - L1PB1 LINE L1 -360 5791 5709 2818 249 45 7 chr4 49063989 49065033 -153263314 + L1MB7 LINE L1 4479 5564 -610 * 4772 174 30 36 chr4 49065027 49066400 -153261947 + L1MA7 LINE L1 4489 5860 -431 2792 107 61 5 chr4 49066400 49066840 -153261507 + MER4C LTR ERV1 1 465 0 4772 174 30 36 chr4 49066840 49067269 -153261078 + L1MA7 LINE L1 5860 6290 -1 22 0 0 0 chr4 49067269 49067291 -153261056 + AT_rich Low_complexity Low_complexity 1 22 0 589 212 93 0 chr4 49067300 49067451 -153260896 + L1MB7 LINE L1 5550 5714 -470 * 5169 159 36 8 chr4 49067449 49067819 -153260528 - L1PA15 LINE L1 -5 6811 6453 421 99 25 49 chr4 49067819 49067900 -153260447 + MADE1 DNA Mariner 2 80 0 5169 159 36 8 chr4 49067900 49068763 -153259584 - L1PA15 LINE L1 -363 6453 5548 2486 94 14 20 chr4 49068770 49069122 -153259225 + THE1B LTR MaLR 15 364 0 12247 219 14 16 chr4 49069128 49071202 -153257145 - L1PA15 LINE L1 -1253 5544 3479 1699 23 0 28 chr4 49071202 49071417 -153256930 - L1PA3 LINE L1 0 6155 5947 12247 219 14 16 chr4 49071417 49072317 -153256030 - L1PA15 LINE L1 -3318 3479 2578 367 276 32 8 chr4 49072300 49072423 -153255924 - L1PA15 LINE L1 -5393 1394 1269 * 1689 239 14 46 chr4 49072423 49072920 -153255427 + L1MB7 LINE L1 5702 6182 -2 31 45 0 30 chr4 49073428 49073450 -153254897 + AT_rich Low_complexity Low_complexity 1 22 -43 2217 208 149 19 chr4 49073450 49074069 -153254278 - LTR34 LTR ERV1 0 699 1 31 45 0 30 chr4 49074069 49074113 -153254234 + AT_rich Low_complexity Low_complexity 22 65 0 446 253 20 48 chr4 49075319 49075465 -153252882 - MER58B DNA MER1_type 0 341 200 1567 233 28 6 chr4 49075632 49075988 -153252359 - MLT1A1 LTR MaLR -1 364 1 1216 151 10 15 chr4 49075993 49076198 -153252149 - MLT1A1-int LTR MaLR -5 1730 1527 41 58 0 0 chr4 49076198 49076267 -153252080 + AT_rich Low_complexity Low_complexity 1 69 0 270 218 18 0 chr4 49076273 49076328 -153252019 - MLT1A1-int LTR MaLR -225 1510 1455 23 92 0 0 chr4 49076519 49076584 -153251763 + AT_rich Low_complexity Low_complexity 1 65 0 34 34 0 17 chr4 49076694 49076731 -153251616 + AT_rich Low_complexity Low_complexity 1 38 -20 1707 166 29 0 chr4 49076731 49077009 -153251338 + AluSx SINE Alu 1 286 -26 34 34 0 17 chr4 49077009 49077030 -153251317 + AT_rich Low_complexity Low_complexity 38 58 0 27 73 0 0 chr4 49077214 49077269 -153251078 + AT_rich Low_complexity Low_complexity 1 55 0 242 304 22 0 chr4 49078185 49078277 -153250070 - L2 LINE L2 -74 3239 3146 191 111 0 28 chr4 49078279 49078315 -153250032 + (TA)n Simple_repeat Simple_repeat 2 36 0 1825 134 0 38 chr4 49078356 49078647 -153249700 + AluSx SINE Alu 2 281 -31 813 161 0 0 chr4 49078647 49078796 -153249551 + GA-rich Low_complexity Low_complexity 1 149 0 362 322 114 15 chr4 49078797 49079061 -153249286 - L2 LINE L2 -189 3124 2835 2002 188 13 61 chr4 49079109 49079587 -153248760 + MER31B LTR ERV1 12 466 0 24 32 0 0 chr4 49079679 49079710 -153248637 + AT_rich Low_complexity Low_complexity 1 31 0 2112 113 59 34 chr4 49080205 49080560 -153247787 + THE1B LTR MaLR 1 364 0 878 216 12 3 chr4 49082636 49082878 -153245469 - MER2 DNA MER2_type -7 338 27 1678 235 25 43 chr4 49083217 49083731 -153244616 - MLT1D LTR MaLR 0 505 1 1198 184 40 12 chr4 49083872 49084122 -153244225 - Tigger2 DNA MER2_type -10 2708 2452 3806 164 45 18 chr4 49084177 49084282 -153244065 - Tigger2 DNA MER2_type -1961 757 656 2420 59 7 0 chr4 49084282 49084587 -153243760 - AluY SINE Alu -4 307 1 3806 164 45 18 chr4 49084587 49085218 -153243129 - Tigger2 DNA MER2_type -2062 656 1 224 340 40 13 chr4 49085569 49085686 -153242661 - MIR SINE MIR -108 154 29 629 229 99 50 chr4 49085743 49085944 -153242403 + MER20 DNA MER1_type 1 211 -8 225 65 0 0 chr4 49086099 49086130 -153242217 + (ATG)n Simple_repeat Simple_repeat 3 33 0 25 31 0 0 chr4 49086809 49086841 -153241506 + AT_rich Low_complexity Low_complexity 1 32 0 409 223 121 13 chr4 49086841 49086998 -153241349 - L1ME3A LINE L1 -13 6157 5984 1278 264 57 28 chr4 49087002 49087544 -153240803 - L1ME2 LINE L1 -2 6162 5605 13949 184 29 33 chr4 49087838 49090428 -153237919 - L1MA3 LINE L1 -3 7721 5121 189 74 0 0 chr4 49090428 49090455 -153237892 + (TTG)n Simple_repeat Simple_repeat 2 28 0 13949 184 29 33 chr4 49090455 49091153 -153237194 - L1MA3 LINE L1 -2603 5121 4421 5705 26 0 0 chr4 49091153 49091815 -153236532 - L1PA3 LINE L1 -5 6150 5489 13949 184 29 33 chr4 49091815 49095718 -153232629 - L1MA3 LINE L1 -3303 4421 208 283 335 76 5 chr4 49096101 49096286 -153232061 - ERVL LTR ERVL -1904 3860 3663 633 363 32 11 chr4 49096788 49097288 -153231059 - ERVL LTR ERVL -1900 3096 2541 410 346 34 37 chr4 49097336 49097634 -153230713 - ERVL LTR ERVL -2564 2432 2136 578 283 93 21 chr4 49097636 49097926 -153230421 - ERVL LTR ERVL -2815 2181 1871 347 288 72 26 chr4 49097977 49098130 -153230217 - ERVL LTR ERVL -3211 1785 1626 2064 226 58 20 chr4 49098462 49098963 -153229384 - MLT2B1 LTR ERVL 0 520 1 543 199 41 7 chr4 49099008 49099154 -153229193 - L1MA10 LINE L1 -7 6327 6177 455 290 7 0 chr4 49099256 49099418 -153228929 + L1ME1 LINE L1 5996 6161 -5 209 424 31 31 chr4 49099896 49100087 -153228260 - MIR3 SINE MIR -4 204 14 1817 242 26 7 chr4 49100996 49101451 -153226896 + MLT1C LTR MaLR 3 466 -1 1587 254 96 33 chr4 49101554 49102097 -153226250 + MER74B LTR ERVL 44 620 -2 218 315 8 62 chr4 49102325 49102455 -153225892 + MIR SINE MIR 59 181 -81 21 0 0 0 chr4 49103902 49103923 -153224424 + AT_rich Low_complexity Low_complexity 1 21 0 259 167 125 0 chr4 49104252 49104348 -153223999 + (TTAA)n Simple_repeat Simple_repeat 3 110 0 226 163 0 0 chr4 49105072 49105115 -153223232 - L1MC4 LINE L1 -1340 6702 6660 229 87 43 0 chr4 49105121 49105167 -153223180 - LTR66 LTR ERVL -171 439 392 312 240 23 54 chr4 49105746 49105875 -153222472 + L1ME2 LINE L1 1475 1599 -4941 315 320 134 0 chr4 49105920 49106092 -153222255 + L1ME2 LINE L1 1862 2056 -4484 1915 191 4 9 chr4 49106498 49107048 -153221299 + L1PB4 LINE L1 4921 5470 -686 2366 181 6 25 chr4 49107055 49107541 -153220806 + L1PB4 LINE L1 5677 6153 -3 369 263 169 19 chr4 49107568 49107728 -153220619 + L1ME2 LINE L1 2501 2684 -4037 275 283 65 22 chr4 49107733 49107871 -153220476 - MER31B LTR ERV1 0 466 323 1923 181 9 0 chr4 49107872 49108208 -153220139 - MER47A DNA MER2_type -1 365 27 1444 165 35 86 chr4 49108220 49108559 -153219788 - MER31B LTR ERV1 -143 323 2 1473 175 76 4 chr4 49108565 49108870 -153219477 - AluSx SINE Alu 0 326 3 250 320 92 12 chr4 49108888 49109138 -153219209 + L1ME2 LINE L1 2642 2911 -3629 685 276 116 53 chr4 49109166 49110048 -153218299 + L1ME2 LINE L1 3521 4457 -2083 2649 251 70 25 chr4 49110048 49110862 -153217485 + L1ME2 LINE L1 4908 5683 -875 2368 88 0 0 chr4 49110862 49111169 -153217178 + AluY SINE Alu 1 307 -4 2649 251 70 25 chr4 49111169 49111920 -153216427 + L1ME2 LINE L1 5683 6549 -9 38 61 0 0 chr4 49111941 49112007 -153216340 + AT_rich Low_complexity Low_complexity 1 66 0 1947 120 18 4 chr4 49112836 49113158 -153215189 - AluSc SINE Alu 0 326 1 244 250 71 0 chr4 49113964 49114020 -153214327 - MIR SINE MIR -108 154 95 56 0 0 0 chr4 49114038 49114094 -153214253 + AT_rich Low_complexity Low_complexity 1 56 0 2637 16 7 3 chr4 49114331 49114638 -153213709 + AluY SINE Alu 1 308 -3 326 248 103 26 chr4 49115165 49115282 -153213065 - MIR SINE MIR -42 220 95 22 0 0 0 chr4 49115303 49115325 -153213022 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 49115366 49115387 -153212960 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 49115447 49115470 -153212877 + AT_rich Low_complexity Low_complexity 1 23 0 188 139 0 23 chr4 49116143 49116186 -153212161 + (TA)n Simple_repeat Simple_repeat 2 43 0 1729 199 65 41 chr4 49116431 49116847 -153211500 - MSTB LTR MaLR 0 426 1 226 339 33 33 chr4 49117294 49117415 -153210932 - MIR SINE MIR -63 145 25 22 56 0 0 chr4 49117489 49117525 -153210822 + AT_rich Low_complexity Low_complexity 1 36 0 352 311 95 46 chr4 49118031 49118146 -153210201 + MIR SINE MIR 10 118 -144 8800 102 28 14 chr4 49118146 49119415 -153208932 - HSMAR1 DNA Mariner 0 1287 1 352 311 95 46 chr4 49119415 49119540 -153208807 + MIR SINE MIR 118 262 0 1300 234 49 38 chr4 49119768 49120354 -153207993 - MER76 LTR ERV -32 656 1 297 0 0 0 chr4 49121433 49121466 -153206881 + (CA)n Simple_repeat Simple_repeat 2 34 0 1481 124 105 14 chr4 49122050 49122379 -153205968 - LTR7 LTR ERV1 -38 412 1 3512 112 12 20 chr4 49122379 49122940 -153205407 - HERVH LTR ERV1 0 7713 7157 1160 133 30 5 chr4 49122933 49123136 -153205211 - HERVH LTR ERV1 -1697 6016 5809 * 1361 262 4 8 chr4 49123986 49124462 -153203885 - MLT1F1 LTR MaLR -1 566 1 327 264 34 102 chr4 49124463 49124728 -153203619 - MLT1F1-int LTR MaLR -1 1370 1124 675 347 52 41 chr4 49124745 49125301 -153203046 + HERV16 LTR ERVL 2896 3457 -2307 1633 216 87 65 chr4 49125386 49125894 -153202453 + MLT1F LTR MaLR 10 528 -14 318 318 55 63 chr4 49125992 49126354 -153201993 + HERV16 LTR ERVL 3230 3588 -1408 260 383 51 46 chr4 49126595 49126801 -153201546 + LTR16A LTR ERVL 60 270 -180 1773 126 8 0 chr4 49126801 49127063 -153201284 - AluSq SINE Alu -8 305 42 260 383 51 46 chr4 49127063 49127245 -153201102 + LTR16A LTR ERVL 270 450 0 710 280 75 49 chr4 49127535 49127881 -153200466 + L2 LINE L2 2959 3313 0 2554 99 6 0 chr4 49128056 49128421 -153199926 - L1PA7 LINE L1 0 6154 5788 2878 124 22 41 chr4 49128421 49128784 -153199563 - L1PA7 LINE L1 -1179 4967 4615 2219 107 0 7 chr4 49128784 49129092 -153199255 - AluY SINE Alu -5 306 1 2878 124 22 41 chr4 49129092 49129237 -153199110 - L1PA7 LINE L1 -1531 4615 4469 24 53 0 0 chr4 49129623 49129661 -153198686 + AT_rich Low_complexity Low_complexity 1 38 0 369 43 0 0 chr4 49130855 49130902 -153197445 + (CA)n Simple_repeat Simple_repeat 1 47 0 614 227 8 23 chr4 49130943 49131075 -153197272 + FLAM_A SINE Alu 2 131 -2 26 0 0 0 chr4 49131745 49131771 -153196576 + AT_rich Low_complexity Low_complexity 1 26 0 211 320 67 27 chr4 49132263 49132413 -153195934 - L2 LINE L2 -368 2946 2791 318 200 0 100 chr4 49132504 49132604 -153195743 - L1ME1 LINE L1 -4 6162 6073 2243 101 0 3 chr4 49132614 49132911 -153195436 + AluY SINE Alu 1 296 -15 410 287 9 17 chr4 49132936 49133051 -153195296 - HERV16 LTR ERVL -3201 1795 1682 1848 319 48 45 chr4 49133122 49133587 -153194760 - HERV16 LTR ERVL -3461 1535 1073 2326 95 0 7 chr4 49133587 49133893 -153194454 + AluSx SINE Alu 1 304 -8 1848 319 48 45 chr4 49133893 49134049 -153194298 - HERV16 LTR ERVL -3923 1073 919 2150 155 59 15 chr4 49134049 49134456 -153193891 - MSTB LTR MaLR -1 425 1 1848 319 48 45 chr4 49134456 49134729 -153193618 - HERV16 LTR ERVL -4077 919 637 3927 146 63 36 chr4 49135035 49135784 -153192563 + LTR1 LTR ERV1 16 784 -1 715 346 33 11 chr4 49135784 49136148 -153192199 - HERV16 LTR ERVL -4622 374 3 276 77 0 0 chr4 49136186 49136225 -153192122 + (TG)n Simple_repeat Simple_repeat 1 39 0 303 381 73 12 chr4 49136236 49136483 -153191864 - LTR16A LTR ERVL -75 375 114 463 271 72 73 chr4 49136744 49137212 -153191135 + L1MDa LINE L1 1526 1971 -4569 5409 180 21 18 chr4 49137504 49139321 -153189026 + L1MA4 LINE L1 4477 6295 -5 1221 313 97 15 chr4 49139325 49140104 -153188243 + L1ME3A LINE L1 5296 6170 0 7135 149 19 4 chr4 49140614 49142319 -153186028 - L1PA13 LINE L1 -383 5785 4056 2174 110 53 11 chr4 49142319 49142660 -153185687 + L1PA13 LINE L1 5790 6159 -4 1788 166 7 0 chr4 49142706 49143002 -153185345 - AluSx SINE Alu -14 298 1 453 289 56 0 chr4 49143381 49143523 -153184824 + MIR SINE MIR 37 186 -76 32 0 0 0 chr4 49143589 49143621 -153184726 + AT_rich Low_complexity Low_complexity 1 32 0 567 211 15 30 chr4 49144008 49144141 -153184206 + MER3 DNA MER1_type 2 132 -77 596 359 15 9 chr4 49144475 49144812 -153183535 - L1ME3A LINE L1 -303 5867 5529 231 326 23 23 chr4 49144937 49145023 -153183324 - MIR SINE MIR -139 123 38 842 224 158 11 chr4 49145109 49145525 -153182822 + MLT1D LTR MaLR 1 505 0 21 0 0 0 chr4 49146180 49146201 -153182146 + AT_rich Low_complexity Low_complexity 1 21 0 237 231 39 0 chr4 49146333 49146411 -153181936 + (TA)n Simple_repeat Simple_repeat 1 81 0 186 150 0 0 chr4 49146480 49146520 -153181827 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 1625 163 40 22 chr4 49146522 49146798 -153181549 - AluJo SINE Alu -31 281 1 344 244 0 8 chr4 49147478 49147595 -153180752 - MER46C DNA MER2_type -130 208 1 2202 102 3 0 chr4 49147744 49148039 -153180308 + AluSg SINE Alu 1 296 -14 353 326 37 7 chr4 49148197 49148332 -153180015 + MLT1I LTR MaLR 63 201 -208 267 361 36 36 chr4 49149559 49149833 -153178514 - HERV16 LTR ERVL -4354 642 369 247 208 0 0 chr4 49150693 49150746 -153177601 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 189 107 0 0 chr4 49151900 49151928 -153176419 + (CA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr4 49152634 49152655 -153175692 + AT_rich Low_complexity Low_complexity 1 21 0 1405 113 38 14 chr4 49153053 49153265 -153175082 - AluSg/x SINE Alu -11 301 85 23 0 0 0 chr4 49153338 49153361 -153174986 + AT_rich Low_complexity Low_complexity 1 23 0 29 47 0 0 chr4 49153684 49153727 -153174620 + AT_rich Low_complexity Low_complexity 1 43 0 532 273 28 23 chr4 49154333 49154598 -153173749 - MLT1A1-int LTR MaLR -881 490 108 381 174 47 0 chr4 49154617 49154703 -153173644 + MLT1F1 LTR MaLR 470 559 -8 333 226 51 73 chr4 49154710 49154847 -153173500 + MLT1F1-int LTR MaLR 1 134 -1237 28 61 0 0 chr4 49154929 49154978 -153173369 + AT_rich Low_complexity Low_complexity 1 49 0 702 290 62 23 chr4 49155235 49155382 -153172965 - L1ME3A LINE L1 -241 5929 5789 1450 212 31 11 chr4 49155382 49155736 -153172611 - MLT1A1 LTR MaLR -3 362 2 183 42 0 0 chr4 49155736 49155760 -153172587 + (TA)n Simple_repeat Simple_repeat 2 25 0 702 290 62 23 chr4 49155760 49155963 -153172384 - L1ME3A LINE L1 -380 5790 5564 232 266 101 37 chr4 49156504 49156613 -153171734 - L1ME3A LINE L1 -626 5538 5423 39291 42 2 0 chr4 49156882 49162507 -153165840 - L1PA4 LINE L1 0 6155 525 212 111 22 0 chr4 49163232 49163277 -153165070 + (TA)n Simple_repeat Simple_repeat 2 47 0 813 159 55 0 chr4 49163289 49163434 -153164913 - BC200 scRNA scRNA -47 153 1 1146 281 212 18 chr4 49164667 49165290 -153163057 + HAL1 LINE L1 102 845 -1662 260 246 158 44 chr4 49165292 49165589 -153162758 + HAL1 LINE L1 891 1221 -1286 523 369 18 50 chr4 49165719 49166161 -153162186 - L2 LINE L2 -6 3307 2880 226 282 26 0 chr4 49166207 49166285 -153162062 + HAL1 LINE L1 1634 1713 -794 10105 156 39 14 chr4 49166303 49168072 -153160275 + Tigger1 DNA MER2_type 1 1814 -604 481 273 99 25 chr4 49168307 49168589 -153159758 + HAL1 LINE L1 2036 2338 -169 1728 139 57 0 chr4 49168592 49168893 -153159454 + L1PA16 LINE L1 5845 6162 -4 24 53 0 0 chr4 49168964 49169002 -153159345 + AT_rich Low_complexity Low_complexity 1 38 0 275 325 36 24 chr4 49170258 49170424 -153157923 + L2 LINE L2 3146 3313 0 31 26 0 0 chr4 49171099 49171137 -153157210 + AT_rich Low_complexity Low_complexity 1 38 0 327 254 87 38 chr4 49171368 49171659 -153156688 + L1MEd LINE L1 942 1143 -4988 2017 107 0 30 chr4 49171659 49171958 -153156389 + AluSc SINE Alu 1 290 -19 327 254 87 38 chr4 49171958 49172040 -153156307 + L1MEd LINE L1 1143 1220 -4911 336 83 0 0 chr4 49172242 49172290 -153156057 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 1690 183 0 3 chr4 49172386 49172722 -153155625 - AluSx SINE Alu 0 336 2 2794 120 69 95 chr4 49173318 49173926 -153154421 - LTR14B LTR ERVK 0 608 17 337 379 53 26 chr4 49174040 49174420 -153153927 + HAL1b LINE L1 70 459 -889 241 265 162 25 chr4 49174518 49174722 -153153625 + L1MEd LINE L1 2456 2687 -3442 405 342 77 25 chr4 49175669 49176113 -153152234 + L1MEd LINE L1 2921 3387 -2742 988 244 71 86 chr4 49176138 49176233 -153152114 - MLT1C LTR MaLR -6 461 366 2054 142 33 3 chr4 49176233 49176600 -153151747 - L1PB4 LINE L1 -2 6154 5777 988 244 71 86 chr4 49176600 49176967 -153151380 - MLT1C LTR MaLR -101 366 6 238 270 27 97 chr4 49176975 49177160 -153151187 + L1MEd LINE L1 3456 3627 -2502 556 292 106 61 chr4 49177168 49178117 -153150230 + L1M4 LINE L1 3503 4494 -1652 473 98 27 80 chr4 49178116 49178228 -153150119 - L1M LINE L1 -930 5370 5265 * 14237 179 28 9 chr4 49178258 49182674 -153145673 - L1MA3 LINE L1 0 7724 3217 9745 181 30 63 chr4 49182672 49182928 -153145419 - L1MA3 LINE L1 -5529 2036 1773 * 207 0 0 0 chr4 49182928 49182951 -153145396 + (TC)n Simple_repeat Simple_repeat 2 24 0 9745 181 30 63 chr4 49182951 49184783 -153143564 - L1MA3 LINE L1 -5792 1773 17 1222 230 0 7 chr4 49184790 49185086 -153143261 - L1 LINE L1 -876 5270 4977 5367 159 11 5 chr4 49185090 49186041 -153142306 + L1MA4 LINE L1 5345 6300 0 2134 122 3 0 chr4 49186883 49187186 -153141161 + AluSg SINE Alu 1 304 -6 665 260 24 6 chr4 49187195 49187364 -153140983 - MIR SINE MIR -25 237 66 701 338 70 3 chr4 49187838 49188140 -153140207 + MLT1I LTR MaLR 85 406 -3 194 292 0 0 chr4 49188199 49188247 -153140100 - L2 LINE L2 -78 3194 3147 27 0 0 0 chr4 49188600 49188627 -153139720 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chr4 49189357 49189388 -153138959 + AT_rich Low_complexity Low_complexity 1 31 0 323 264 73 36 chr4 49189608 49189718 -153138629 + L2 LINE L2 3188 3301 -12 189 378 88 54 chr4 49190182 49190330 -153138017 + L2 LINE L2 3102 3254 -18 282 381 38 6 chr4 49191417 49191577 -153136770 - L2 LINE L2 -260 3053 2889 401 316 16 62 chr4 49191577 49191770 -153136577 + MIR SINE MIR 72 255 -7 1474 251 91 0 chr4 49191836 49192222 -153136125 - MLT1D LTR MaLR -1 504 84 186 167 0 0 chr4 49192264 49192300 -153136047 + (TA)n Simple_repeat Simple_repeat 1 36 0 2289 321 146 22 chr4 49192454 49193787 -153134560 - L2 LINE L2 -955 2359 862 554 246 65 40 chr4 49193804 49194003 -153134344 - L2 LINE L2 -2757 557 354 202 381 19 9 chr4 49194128 49194233 -153134114 + MIR SINE MIR 2 107 -155 1212 211 100 4 chr4 49196164 49196424 -153131923 + AluJo SINE Alu 3 287 -25 22 0 0 0 chr4 49196673 49196695 -153131652 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 49196868 49196890 -153131457 + AT_rich Low_complexity Low_complexity 1 22 0 1835 116 16 46 chr4 49196900 49197203 -153131144 + AluSg SINE Alu 1 294 -16 315 71 0 0 chr4 49197536 49197578 -153130769 + (CA)n Simple_repeat Simple_repeat 1 42 0 244 376 70 28 chr4 49197701 49197914 -153130433 - L2 LINE L2 -86 3227 3006 197 374 68 27 chr4 49198238 49198457 -153129890 + L2 LINE L2 3000 3227 -86 294 143 0 0 chr4 49198644 49198693 -153129654 + (TA)n Simple_repeat Simple_repeat 1 49 0 351 317 103 0 chr4 49198837 49198982 -153129365 - L2 LINE L2 -1842 1472 1313 757 239 33 48 chr4 49199051 49199323 -153129024 + L1MB8 LINE L1 5910 6177 -1 982 240 116 31 chr4 49199767 49200121 -153128226 + MER57B LTR ERV1 2 385 -49 1971 112 112 73 chr4 49200121 49200504 -153127843 - MER48 LTR ERV1 0 398 1 17496 114 16 3 chr4 49200504 49203056 -153125291 - HERVH48 LTR ERV1 0 6654 4069 * 24583 125 23 9 chr4 49203045 49206886 -153121461 - HERVH48 LTR ERV1 -2758 3896 1 2185 120 64 51 chr4 49206886 49207279 -153121068 - MER48 LTR ERV1 0 398 1 229 113 0 19 chr4 49207279 49207332 -153121015 + MER57A LTR ERV1 350 401 -2 216 86 0 0 chr4 49207457 49207492 -153120855 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 749 250 0 18 chr4 49207520 49207684 -153120663 - FRAM SINE Alu -4 162 2 1334 251 51 11 chr4 49207701 49208075 -153120272 - LTR52 LTR ERVL -32 389 1 261 0 0 0 chr4 49208954 49208983 -153119364 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 27 0 0 0 chr4 49209599 49209626 -153118721 + AT_rich Low_complexity Low_complexity 1 27 0 32 0 0 0 chr4 49209739 49209771 -153118576 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr4 49210349 49210380 -153117967 + AT_rich Low_complexity Low_complexity 1 31 0 612 295 133 3 chr4 49211008 49211310 -153117037 + MER58B DNA MER1_type 1 341 0 1130 190 49 36 chr4 49211590 49211837 -153116510 + MLT1A1 LTR MaLR 116 365 0 2265 87 7 10 chr4 49211933 49212232 -153116115 + AluSq SINE Alu 3 300 -13 3208 226 25 42 chr4 49213279 49214481 -153113866 - L1MB5 LINE L1 -12 6162 4971 1328 214 77 17 chr4 49214504 49214854 -153113493 + MLT2C2 LTR ERVL 19 389 -75 652 276 92 35 chr4 49214916 49215144 -153113203 + MIR SINE MIR 12 252 -10 25 0 0 0 chr4 49215218 49215243 -153113104 + AT_rich Low_complexity Low_complexity 1 25 0 269 218 13 0 chr4 49215384 49215462 -153112885 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 21 36 0 0 chr4 49216110 49216138 -153112209 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 49216905 49216927 -153111420 + AT_rich Low_complexity Low_complexity 1 22 0 300 381 23 6 chr4 49216969 49217142 -153111205 + L1MEd LINE L1 42 217 -5902 404 220 33 0 chr4 49217156 49217246 -153111101 - MLT1B LTR MaLR -46 344 252 1277 196 4 22 chr4 49217246 49217517 -153110830 - MER31A LTR ERV1 0 485 220 432 205 0 0 chr4 49217519 49217597 -153110750 - MER31A LTR ERV1 -399 86 9 508 206 58 152 chr4 49217610 49217887 -153110460 - MLT1B LTR MaLR -139 251 1 2295 131 45 13 chr4 49217918 49218316 -153110031 + L1PA15 LINE L1 5745 6155 -10 23 0 0 0 chr4 49218701 49218724 -153109623 + AT_rich Low_complexity Low_complexity 1 23 0 1574 277 80 15 chr4 49218725 49219793 -153108554 + L1ME2 LINE L1 4817 5954 -210 2397 70 0 7 chr4 49219856 49220154 -153108193 + AluY SINE Alu 2 297 -14 1826 195 147 20 chr4 49220282 49220738 -153107609 + MLT2B1 LTR ERVL 7 520 0 1523 189 40 0 chr4 49221146 49221421 -153106926 + AluJo SINE Alu 21 306 -6 2232 121 0 0 chr4 49222081 49222379 -153105968 + AluSg SINE Alu 1 298 -12 1930 159 0 7 chr4 49222543 49222852 -153105495 - AluJb SINE Alu -5 307 1 21 36 0 0 chr4 49222877 49222905 -153105442 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 49223104 49223132 -153105215 + AT_rich Low_complexity Low_complexity 1 28 0 231 114 0 0 chr4 49223766 49223801 -153104546 + (CA)n Simple_repeat Simple_repeat 2 36 0 368 71 0 0 chr4 49223943 49223999 -153104348 - L1PA6 LINE L1 0 6154 6099 15701 104 15 4 chr4 49224290 49226754 -153101593 - L1PA7 LINE L1 -685 5487 3002 5313 59 9 0 chr4 49226754 49227427 -153100920 + L1PA7 LINE L1 5473 6154 0 2312 62 7 26 chr4 49227480 49227788 -153100559 - AluY SINE Alu -9 302 1 5599 251 57 78 chr4 49227891 49230131 -153098216 + L1MA4 LINE L1 6 2197 -4652 * 9707 202 23 8 chr4 49230114 49233374 -153094973 + L1MA4 LINE L1 3685 6995 -7 203 179 0 0 chr4 49234255 49234294 -153094053 + T-rich Low_complexity Low_complexity 1 39 0 180 341 109 14 chr4 49234445 49234583 -153093764 + MIR SINE MIR 37 187 -75 254 210 173 12 chr4 49235236 49235317 -153093030 + MLT1L LTR MaLR 522 615 0 21 0 0 0 chr4 49235654 49235675 -153092672 + AT_rich Low_complexity Low_complexity 1 21 0 6985 213 83 18 chr4 49236011 49236843 -153091504 - L1MC3 LINE L1 -1 7784 7008 260 27 27 0 chr4 49236843 49236880 -153091467 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 6985 213 83 18 chr4 49236880 49238024 -153090323 - L1MC3 LINE L1 -777 7008 5679 * 16549 41 2 3 chr4 49238019 49240824 -153087523 - L1PA4 LINE L1 -3 6152 3350 1688 239 30 13 chr4 49240832 49241521 -153086826 - L1MC3 LINE L1 -745 5401 4978 1437 214 61 12 chr4 49241548 49241894 -153086453 + MLT1A1 LTR MaLR 1 363 -2 2727 236 21 58 chr4 49241897 49242040 -153086307 + MLT1A1-int LTR MaLR 2 149 -1586 381 58 0 0 chr4 49242040 49242092 -153086255 + (TATG)n Simple_repeat Simple_repeat 3 54 0 2419 101 6 0 chr4 49242092 49242437 -153085910 - L1PA7 LINE L1 -19 6135 5789 2727 236 21 58 chr4 49242437 49243088 -153085259 + MLT1A1-int LTR MaLR 147 768 -967 1273 312 144 9 chr4 49243307 49243961 -153084386 + L2 LINE L2 1620 2361 -953 588 210 41 54 chr4 49243997 49244254 -153084093 + LOR1-int LTR ERV1 3059 3174 -1762 470 237 51 39 chr4 49244470 49244626 -153083721 - MIR SINE MIR -13 249 92 5547 110 105 58 chr4 49245894 49247335 -153081012 - pTR5 LTR ERV1 0 2025 29 21 57 0 0 chr4 49247964 49247999 -153080348 + AT_rich Low_complexity Low_complexity 1 35 0 3936 32 36 14 chr4 49248087 49248230 -153080117 + L1PA4 LINE L1 5640 5778 -377 2901 13 0 0 chr4 49248230 49248548 -153079799 + AluYb8 SINE Alu 1 318 0 3936 32 36 14 chr4 49248548 49248908 -153079439 + L1PA4 LINE L1 5778 6154 -1 533 264 134 10 chr4 49249956 49250157 -153078190 + MIR SINE MIR 15 240 -22 634 272 40 44 chr4 49250449 49250699 -153077648 + MER46C DNA MER2_type 86 334 -4 361 323 24 67 chr4 49251806 49252060 -153076287 - MIR SINE MIR -1 261 19 1634 172 51 0 chr4 49252795 49253068 -153075279 + AluJb SINE Alu 1 287 -25 189 94 0 0 chr4 49254424 49254456 -153073891 + (TA)n Simple_repeat Simple_repeat 1 32 0 1699 216 18 0 chr4 49255980 49256308 -153072039 + MSTB1 LTR MaLR 1 334 -98 351 0 0 0 chr4 49257459 49257498 -153070849 + (TG)n Simple_repeat Simple_repeat 2 40 0 369 341 16 0 chr4 49257664 49257787 -153070560 + LTR16A LTR ERVL 201 325 -125 263 170 0 19 chr4 49257790 49257843 -153070504 + L1MDa LINE L1 1846 1897 -4643 2312 81 0 7 chr4 49257874 49258172 -153070175 + AluY SINE Alu 16 311 0 779 287 79 63 chr4 49258284 49258827 -153069520 + L1ME LINE L1 102 653 -5417 1080 334 58 27 chr4 49258979 49259965 -153068382 + MERVL LTR ERVL 2572 3630 -1982 351 0 0 0 chr4 49260010 49260049 -153068298 + (TA)n Simple_repeat Simple_repeat 1 39 0 1125 260 120 29 chr4 49260065 49260507 -153067840 - MER101B LTR ERV1 -65 505 24 540 222 0 59 chr4 49260547 49260682 -153067665 - LTR38-int LTR ERV1 -1024 7096 6970 314 273 0 118 chr4 49261299 49261409 -153066938 - LTR38-int LTR ERV1 -4238 3882 3786 443 255 57 25 chr4 49261487 49261644 -153066703 - LTR38-int LTR ERV1 -459 1327 1166 457 198 38 24 chr4 49261656 49261860 -153066487 - MER34 LTR ERV1 -184 358 122 286 135 0 58 chr4 49262187 49262239 -153066108 - LTR57-int LTR ERVL -4992 351 303 739 223 39 60 chr4 49262770 49263003 -153065344 - MER101B LTR ERV1 -15 519 236 298 229 0 29 chr4 49263045 49263115 -153065232 - MER101B LTR ERV1 -479 91 24 26 82 0 0 chr4 49263597 49263658 -153064689 + AT_rich Low_complexity Low_complexity 1 61 0 26 64 0 0 chr4 49263777 49263824 -153064523 + AT_rich Low_complexity Low_complexity 1 47 0 621 202 219 84 chr4 49264254 49264601 -153063746 - MSTD LTR MaLR 0 396 3 2516 252 51 8 chr4 49264603 49265191 -153063156 - MSTD-int LTR MaLR 0 1735 1123 1275 247 22 10 chr4 49265187 49265499 -153062848 + MLT-int LTR MaLR 311 626 -1109 * 214 185 0 46 chr4 49265723 49265788 -153062559 + T-rich Low_complexity Low_complexity 5 66 0 6149 202 40 74 chr4 49265791 49267698 -153060649 - L1PA16 LINE L1 -9 6157 4188 519 139 0 57 chr4 49267698 49267820 -153060527 - Tigger7 DNA MER2_type -111 2476 2362 6149 202 40 74 chr4 49267820 49268034 -153060313 - L1PA16 LINE L1 -1978 4188 3968 5318 198 5 2 chr4 49268034 49269931 -153058416 - L1PA14 LINE L1 -2 6159 4253 6149 202 40 74 chr4 49269931 49271298 -153057049 - L1PA16 LINE L1 -2198 3968 2684 1430 62 273 217 chr4 49271298 49271731 -153056616 - LTR12 LTR ERV1 -205 509 53 228 216 20 0 chr4 49271731 49271782 -153056565 - LTR30 LTR ERV1 -670 52 1 1156 110 42 16 chr4 49271782 49271973 -153056374 - MSTA LTR MaLR -232 196 1 8338 195 40 0 chr4 49271973 49273560 -153054787 - MSTA-int LTR MaLR 0 1651 1 1912 156 99 13 chr4 49273560 49273945 -153054402 - MSTA LTR MaLR 0 428 11 801 137 192 0 chr4 49273947 49274093 -153054254 - L1PA12 LINE L1 -7403 178 5 1507 301 160 13 chr4 49274338 49274624 -153053723 - MLT-int LTR MaLR -325 1410 1167 3313 193 69 14 chr4 49274624 49275366 -153052981 - LTR39 LTR ERV1 0 783 1 1507 301 160 13 chr4 49275366 49275690 -153052657 - MLT-int LTR MaLR -568 1167 710 * 2988 194 28 2 chr4 49275683 49276281 -153052066 - MLT1A1-int LTR MaLR -1120 615 2 1593 234 21 0 chr4 49276304 49276637 -153051710 - MLT1A1 LTR MaLR -25 340 1 1761 197 144 3 chr4 49276697 49277078 -153051269 - LTR47A LTR ERVL -13 439 5 705 209 82 33 chr4 49277138 49277445 -153050902 - LTR35 LTR ERV1 0 669 192 2772 200 6 21 chr4 49278014 49278677 -153049670 - MER44D DNA MER2_type 0 605 2 2032 276 31 33 chr4 49279465 49279576 -153048771 + L1M1 LINE L1 17 127 -7438 1574 80 9 31 chr4 49279576 49279802 -153048545 + AluY SINE Alu 77 297 -14 2032 276 31 33 chr4 49279802 49280328 -153048019 + L1M1 LINE L1 127 653 -6912 1542 203 64 88 chr4 49280328 49280825 -153047522 - LTR8A LTR ERV1 0 727 243 23 33 0 0 chr4 49332067 49332097 -152996250 + AT_rich Low_complexity Low_complexity 1 30 0 291 28 0 0 chr4 49332500 49332536 -152995811 + (T)n Simple_repeat Simple_repeat 1 36 0 876 230 35 62 chr4 49332675 49332824 -152995523 - MLT1E1 LTR MaLR -2 652 511 1013 227 58 37 chr4 49332824 49333119 -152995228 + AluJo SINE Alu 2 302 0 876 230 35 62 chr4 49333119 49333226 -152995121 - MLT1E1 LTR MaLR -143 511 403 557 249 99 59 chr4 49333276 49333549 -152994798 - MLT1E1 LTR MaLR -357 297 14 373 296 125 31 chr4 49333550 49333935 -152994412 + L1M4 LINE L1 4572 4992 -1154 180 0 0 0 chr4 49334079 49334099 -152994248 + (T)n Simple_repeat Simple_repeat 1 20 0 277 206 219 14 chr4 49334148 49334221 -152994126 - MLT1E LTR MaLR -499 94 7 1462 258 68 48 chr4 49334221 49335567 -152992780 + L1ME2 LINE L1 4577 5950 -214 658 152 45 15 chr4 49335564 49335696 -152992651 - L1MA8 LINE L1 -230 6061 5926 * 21 0 0 0 chr4 49335962 49335983 -152992364 + AT_rich Low_complexity Low_complexity 1 21 0 248 333 54 0 chr4 49336525 49336618 -152991729 - MIR SINE MIR -79 183 86 794 146 0 0 chr4 49336628 49336751 -152991596 + LTR69 LTR ERVL 2 124 -464 583 175 53 9 chr4 49336759 49336873 -152991474 + LTR69 LTR ERVL 225 343 -245 5961 40 18 3 chr4 49336873 49337647 -152990700 - L1P LINE L1 -2758 3388 2603 * 7372 37 0 1 chr4 49337633 49338898 -152989449 + L1PA5 LINE L1 4908 6171 0 1094 250 4 4 chr4 49338902 49339138 -152989209 + LTR69 LTR ERVL 343 578 -10 226 360 43 31 chr4 49339672 49339833 -152988514 + MIR SINE MIR 49 211 -51 1991 175 14 14 chr4 49340107 49340472 -152987875 - MLT1A1 LTR MaLR 0 365 1 426 313 128 19 chr4 49341041 49341252 -152987095 - MIR SINE MIR -8 254 21 556 238 45 78 chr4 49341883 49342152 -152986195 - L2 LINE L2 -7 3306 3047 800 197 167 1 chr4 49343226 49343424 -152984923 + MLT1D LTR MaLR 230 448 -57 210 344 21 11 chr4 49343542 49343635 -152984712 - MER5A DNA MER1_type -31 158 65 2009 123 13 3 chr4 49345181 49345490 -152982857 - AluSx SINE Alu 0 312 1 784 317 63 45 chr4 49345490 49345982 -152982365 - L2 LINE L2 -8 3305 2805 351 0 0 0 chr4 49346149 49346188 -152982159 + (TG)n Simple_repeat Simple_repeat 2 40 0 443 281 37 13 chr4 49347343 49347538 -152980809 - MLT1L LTR MaLR -44 558 347 312 375 51 13 chr4 49348005 49348240 -152980107 + MIR SINE MIR 17 260 -2 475 158 0 0 chr4 49349630 49349728 -152978619 - L1MA9 LINE L1 -8 6288 6186 332 211 67 11 chr4 49349734 49349824 -152978523 - L2 LINE L2 -1 3312 3218 4146 229 46 36 chr4 49350191 49351424 -152976923 + MER45R DNA AcHobo 333 1578 -3 379 185 94 60 chr4 49351490 49351664 -152976683 + MIR SINE MIR 47 224 -38 624 257 103 18 chr4 49351714 49351986 -152976361 - MER110 LTR ERV1 -28 463 169 238 155 24 131 chr4 49352083 49352167 -152976180 - MER110A LTR ERV1 -324 144 70 234 356 24 76 chr4 49353473 49353723 -152974624 - LTR16B LTR ERVL -227 237 1 310 339 16 0 chr4 49354920 49355041 -152973306 + CT-rich Low_complexity Low_complexity 2 124 0 309 357 47 39 chr4 49355843 49356098 -152972249 - LTR16B LTR ERVL -173 291 35 2403 56 38 3 chr4 49356855 49357174 -152971173 - L1PA7 LINE L1 -2 6152 5823 24 0 0 0 chr4 49358136 49358160 -152970187 + AT_rich Low_complexity Low_complexity 1 24 0 481 211 83 23 chr4 49360772 49360905 -152967442 + MER58C DNA MER1_type 67 207 -8 2576 61 0 0 chr4 49360905 49361216 -152967131 + AluY SINE Alu 1 311 0 1548 222 48 13 chr4 49361255 49361651 -152966696 - MLT1C LTR MaLR 0 467 58 232 313 30 53 chr4 49361780 49361911 -152966436 + L2 LINE L2 2964 3091 -222 24 77 0 0 chr4 49362382 49362434 -152965913 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr4 49362525 49362547 -152965800 + AT_rich Low_complexity Low_complexity 1 22 0 3374 147 41 48 chr4 49362650 49363360 -152964987 + MER67C LTR ERV1 2 706 -4 1984 60 86 26 chr4 49363530 49363798 -152964549 - AluY SINE Alu -7 304 21 471 338 70 0 chr4 49364513 49364714 -152963633 + MIR SINE MIR 17 231 -31 22 0 0 0 chr4 49365042 49365064 -152963283 + AT_rich Low_complexity Low_complexity 1 22 0 555 272 84 71 chr4 49365098 49365550 -152962797 + MLT1H1 LTR MaLR 1 436 -106 29 28 0 0 chr4 49365814 49365850 -152962497 + AT_rich Low_complexity Low_complexity 1 36 0 1570 179 32 65 chr4 49365951 49366354 -152961993 + MLT1B LTR MaLR 1 390 0 308 219 27 0 chr4 49366544 49366617 -152961730 + LTR67 LTR ERVL 479 553 -4 207 298 244 15 chr4 49367029 49367160 -152961187 + MIR SINE MIR 48 208 -54 1887 128 22 22 chr4 49367213 49367526 -152960821 + AluSq SINE Alu 1 313 0 318 304 0 36 chr4 49368868 49368980 -152959367 - L2 LINE L2 -1 3312 3205 267 114 0 0 chr4 49369166 49369210 -152959137 + (TG)n Simple_repeat Simple_repeat 1 44 0 28 0 0 0 chr4 49369561 49369589 -152958758 + AT_rich Low_complexity Low_complexity 1 28 0 405 307 57 11 chr4 49370263 49370439 -152957908 - MIR SINE MIR -12 250 67 191 316 32 71 chr4 49370550 49370705 -152957642 - MIR SINE MIR -55 207 59 201 269 15 60 chr4 49371410 49371477 -152956870 + L2 LINE L2 3207 3270 -2 239 306 0 0 chr4 49372015 49372064 -152956283 - Alu SINE Alu -116 185 137 427 316 166 0 chr4 49372282 49372469 -152955878 + MIR SINE MIR 18 235 -27 308 288 0 0 chr4 49372471 49372551 -152955796 - MER116 DNA Mariner 0 80 1 231 284 34 23 chr4 49373017 49373105 -152955242 + LTR23 LTR ERV1 336 424 -13 415 333 0 0 chr4 49373724 49373859 -152954488 + GA-rich Low_complexity Low_complexity 2 136 0 24 53 0 0 chr4 49373868 49373906 -152954441 + AT_rich Low_complexity Low_complexity 1 38 0 2216 235 75 65 chr4 49373968 49374610 -152953737 - MER21B LTR ERV1 -11 852 199 738 23 0 0 chr4 49374610 49374697 -152953650 - L1PA5 LINE L1 -8 6146 6060 2216 235 75 65 chr4 49374697 49374898 -152953449 - MER21B LTR ERV1 -664 199 1 519 309 50 27 chr4 49374917 49375137 -152953210 + MIR SINE MIR 28 252 -10 27 29 0 0 chr4 49375166 49375200 -152953147 + AT_rich Low_complexity Low_complexity 1 34 0 1326 167 21 0 chr4 49375219 49375452 -152952895 + LTR24C LTR ERV1 398 635 0 336 290 131 36 chr4 49375453 49375814 -152952533 - MLT1J1 LTR MaLR -46 363 1 618 335 15 8 chr4 49375849 49376109 -152952238 - MLT1J LTR MaLR -247 264 3 1171 199 64 4 chr4 49377837 49378103 -152950244 - L1MA6 LINE L1 -2 6298 6017 * 1395 194 24 18 chr4 49378102 49378431 -152949916 - L1 LINE L1 -2042 5523 5193 40 21 0 0 chr4 49378441 49378488 -152949859 + AT_rich Low_complexity Low_complexity 1 47 0 5960 107 23 10 chr4 49378508 49379548 -152948799 - L1PA13 LINE L1 -4 6810 5785 1979 147 25 20 chr4 49379548 49379901 -152948446 - THE1A LTR MaLR 0 355 1 11035 113 11 1 chr4 49379901 49381464 -152946883 - THE1A-int LTR MaLR 0 1580 1 2212 130 11 11 chr4 49381464 49381819 -152946528 - THE1A LTR MaLR 0 355 1 5960 107 23 10 chr4 49381819 49382358 -152945989 - L1PA13 LINE L1 -1028 5786 5214 9460 194 15 11 chr4 49382463 49383480 -152944867 - L1PA13 LINE L1 -1606 5191 4161 207 0 0 0 chr4 49383480 49383503 -152944844 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 9460 194 15 11 chr4 49383503 49384447 -152943900 - L1PA13 LINE L1 -2636 4161 3222 1803 226 39 3 chr4 49384443 49384806 -152943541 - L1PA13 LINE L1 -6409 378 3 * 1685 203 0 3 chr4 49384823 49385128 -152943219 - AluJo SINE Alu -7 305 2 6016 236 26 17 chr4 49385129 49385984 -152942363 - L1 LINE L1 -2357 5208 4362 1936 181 3 11 chr4 49385984 49386360 -152941987 - L1PA16 LINE L1 0 6166 5794 6016 236 26 17 chr4 49386360 49386997 -152941350 - L1 LINE L1 -3203 4362 3695 2190 193 24 7 chr4 49386997 49387416 -152940931 + MSTB LTR MaLR 1 426 0 6016 236 26 17 chr4 49387416 49387817 -152940530 - L1 LINE L1 -3870 3695 3299 1588 241 14 32 chr4 49388125 49388557 -152939790 + L1M2 LINE L1 2203 2626 -4223 742 299 19 34 chr4 49388580 49388848 -152939499 - L1 LINE L1 -5165 2401 2138 1178 321 73 30 chr4 49389401 49390005 -152938342 - L1 LINE L1 -6154 1412 783 987 230 44 0 chr4 49390053 49390257 -152938090 + Tigger3b DNA MER2_type 2 214 -1017 2643 73 0 5 chr4 49390257 49390627 -152937720 - L1PA7 LINE L1 -787 5359 4992 5532 90 4 1 chr4 49390627 49391400 -152936947 + L1PA7 LINE L1 5363 6138 -16 4635 145 87 26 chr4 49391408 49391437 -152936910 + Tigger3b DNA MER2_type 198 224 -2804 1911 158 39 18 chr4 49391437 49391767 -152936580 - MER1B DNA MER1_type 0 337 1 4635 145 87 26 chr4 49391767 49392711 -152935636 + Tigger3b DNA MER2_type 224 1231 0 27 49 0 0 chr4 49393432 49393473 -152934874 + AT_rich Low_complexity Low_complexity 1 41 0 1240 261 78 14 chr4 49394152 49394950 -152933397 - L1MEc LINE L1 -3701 2514 1703 514 266 0 0 chr4 49394960 49395073 -152933274 + FLAM_C SINE Alu 7 119 -24 273 98 0 0 chr4 49395073 49395114 -152933233 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 536 312 55 30 chr4 49395163 49395705 -152932642 - L1MEc LINE L1 -4752 1644 1089 5675 71 0 4 chr4 49396044 49396794 -152931553 - L1PA7 LINE L1 0 6154 5408 2373 108 5 5 chr4 49396794 49397177 -152931170 + L1P LINE L1 5031 5413 -741 473 274 133 6 chr4 49397177 49397494 -152930853 - Charlie1 DNA MER1_type -1896 865 509 889 62 0 0 chr4 49397658 49397771 -152930576 - AluY SINE Alu -198 113 1 631 278 65 26 chr4 49397799 49398029 -152930318 - Charlie1 DNA MER1_type -2521 240 2 2287 89 0 13 chr4 49398234 49398547 -152929800 + AluY SINE Alu 1 309 -2 224 357 23 16 chr4 49398757 49398886 -152929461 + MIR SINE MIR 79 208 -54 214 198 70 12 chr4 49398916 49399002 -152929345 + (TTATG)n Simple_repeat Simple_repeat 2 92 0 376 304 100 32 chr4 49399425 49399645 -152928702 - MIR SINE MIR -3 259 25 3935 190 11 11 chr4 49399748 49400475 -152927872 + MER57-int LTR ERV1 6419 7145 -392 607 200 66 47 chr4 49400475 49400712 -152927635 + LTR54B LTR ERV1 6 249 -261 1202 170 45 34 chr4 49400737 49400869 -152927478 + MER57A LTR ERV1 133 262 -141 2921 138 88 0 chr4 49400869 49401382 -152926965 + LTR64 LTR ERVK 1 558 0 1202 170 45 34 chr4 49401382 49401514 -152926833 + MER57A LTR ERV1 262 400 -3 1690 120 70 99 chr4 49401661 49402044 -152926303 + THE1C LTR MaLR 1 372 -3 383 305 82 65 chr4 49402050 49402450 -152925897 - MLT1K LTR MaLR -49 539 133 27 29 0 0 chr4 49402984 49403018 -152925329 + AT_rich Low_complexity Low_complexity 1 34 0 473 268 16 8 chr4 49403103 49403226 -152925121 + MIR SINE MIR 83 206 -56 379 269 43 62 chr4 49403772 49403969 -152924378 + MIR SINE MIR 21 212 -50 4219 178 31 66 chr4 49404118 49404926 -152923421 + L1MA7 LINE L1 4549 5384 -907 2905 81 2 0 chr4 49404926 49405320 -152923027 + L1PA13 LINE L1 5750 6144 -19 4219 178 31 66 chr4 49405320 49406304 -152922043 + L1MA7 LINE L1 5384 6291 0 39 38 0 0 chr4 49406304 49406357 -152921990 + AT_rich Low_complexity Low_complexity 1 53 0 2692 216 49 9 chr4 49406357 49406991 -152921356 + MER67C LTR ERV1 52 710 0 21 0 0 0 chr4 49407549 49407570 -152920777 + AT_rich Low_complexity Low_complexity 1 21 0 228 326 30 0 chr4 49407683 49407818 -152920529 + L1ME LINE L1 5297 5435 -731 244 324 0 0 chr4 49407920 49407994 -152920353 + L1ME LINE L1 5565 5638 -532 1936 216 21 10 chr4 49408114 49408503 -152919844 - MER70B LTR ERVL -102 476 84 722 282 94 25 chr4 49408714 49408959 -152919388 + MIR SINE MIR 1 262 0 212 229 0 0 chr4 49409555 49409603 -152918744 + L2 LINE L2 3265 3312 -1 2666 3 40 0 chr4 49409699 49409997 -152918350 - AluYb8 SINE Alu -8 310 1 2036 222 57 2 chr4 49410979 49411402 -152916945 - MER70A LTR ERVL -26 446 1 21 0 0 0 chr4 49412192 49412213 -152916134 + AT_rich Low_complexity Low_complexity 1 21 0 226 119 0 0 chr4 49412460 49412502 -152915845 + LTR66 LTR ERVL 398 439 -171 23 54 0 0 chr4 49412623 49412660 -152915687 + AT_rich Low_complexity Low_complexity 1 37 0 452 309 119 10 chr4 49412686 49412880 -152915467 + MIR SINE MIR 1 215 -47 860 131 0 182 chr4 49413128 49413364 -152914983 + 7SK RNA RNA 1 193 0 266 305 41 16 chr4 49413401 49413582 -152914765 + L1ME LINE L1 5445 5630 -491 378 336 163 52 chr4 49413753 49414197 -152914150 - L2 LINE L2 -5 3267 2733 399 21 0 0 chr4 49414197 49414245 -152914102 + (TTG)n Simple_repeat Simple_repeat 2 49 0 378 336 163 52 chr4 49414245 49414436 -152913911 - L2 LINE L2 -539 2733 2565 6973 59 0 6 chr4 49415325 49416246 -152912101 - L1PA7 LINE L1 -1 6153 5235 28398 128 26 71 chr4 49416349 49421855 -152906492 - L1P LINE L1 -876 5270 12 21 0 0 0 chr4 49422795 49422816 -152905531 + AT_rich Low_complexity Low_complexity 1 21 0 290 243 68 0 chr4 49422960 49423034 -152905313 + Tigger3(Golem) DNA MER2_type 3 81 -2948 733 175 0 0 chr4 49423039 49423159 -152905188 + Tigger3(Golem) DNA MER2_type 2908 3027 -2 293 246 131 23 chr4 49423766 49423896 -152904451 + MER103 DNA DNA 3 146 -20 374 269 103 0 chr4 49424065 49424210 -152904137 - L1MC4a LINE L1 -1220 6588 6429 * 777 281 63 21 chr4 49424201 49424532 -152903815 + L1MC4 LINE L1 6688 7032 -1010 803 221 21 131 chr4 49424563 49424650 -152903697 + MLT2D LTR ERVL 1 96 -366 1705 89 57 0 chr4 49424650 49424896 -152903451 - L1PA6 LINE L1 -6 6148 5889 803 221 21 131 chr4 49424896 49425086 -152903261 + MLT2D LTR ERVL 96 229 -233 207 0 0 0 chr4 49425086 49425109 -152903238 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 803 221 21 131 chr4 49425109 49425214 -152903133 + MLT2D LTR ERVL 229 344 -118 408 216 0 48 chr4 49425265 49425390 -152902957 + L1MC4 LINE L1 7097 7215 -827 21 36 0 0 chr4 49425853 49425881 -152902466 + AT_rich Low_complexity Low_complexity 1 28 0 1704 173 6 16 chr4 49427074 49427386 -152900961 + AluSx SINE Alu 3 311 -1 22 0 0 0 chr4 49427886 49427908 -152900439 + AT_rich Low_complexity Low_complexity 1 22 0 681 319 30 15 chr4 49428040 49428379 -152899968 - L2 LINE L2 -226 3087 2748 493 176 0 102 chr4 49428383 49428491 -152899856 - Tigger7 DNA MER2_type -1 2490 2394 * 2402 215 36 16 chr4 49428485 49428982 -152899365 - Tigger7 DNA MER2_type -1973 514 8 1245 260 188 26 chr4 49428982 49429524 -152898823 - L2 LINE L2 -557 2757 2128 2390 222 41 42 chr4 49429746 49430435 -152897912 + MER76 LTR ERV 1 688 0 29 60 0 0 chr4 49430674 49430724 -152897623 + AT_rich Low_complexity Low_complexity 1 50 0 1248 181 60 115 chr4 49430798 49431217 -152897130 + MSTD LTR MaLR 1 396 0 2298 183 21 2 chr4 49431226 49431646 -152896701 - MSTA LTR MaLR 0 428 1 1659 154 4 0 chr4 49431952 49432227 -152896120 - AluSx SINE Alu 0 315 40 202 315 34 11 chr4 49432359 49432448 -152895899 + MIR SINE MIR 51 141 -121 243 326 99 50 chr4 49432857 49433078 -152895269 + MIR SINE MIR 6 237 -25 286 237 0 0 chr4 49433313 49433372 -152894975 + AluJ/FLAM SINE Alu 3 61 -241 240 35 0 0 chr4 49433465 49433494 -152894853 + (GA)n Simple_repeat Simple_repeat 2 30 0 209 345 35 44 chr4 49433781 49433894 -152894453 - MIR SINE MIR -120 142 31 295 164 0 238 chr4 49435170 49435292 -152893055 - AluJ/FLAM SINE Alu -205 97 5 1084 325 35 9 chr4 49436591 49437043 -152891304 + LTR16B LTR ERVL 1 464 0 21 0 0 0 chr4 49437184 49437205 -152891142 + AT_rich Low_complexity Low_complexity 1 21 0 212 255 20 143 chr4 49438417 49438515 -152889832 + MIR SINE MIR 6 91 -171 26 30 0 0 chr4 49439331 49439364 -152888983 + AT_rich Low_complexity Low_complexity 1 33 0 2594 243 101 17 chr4 49439738 49440494 -152887853 - MER21B LTR ERV1 -2 861 43 308 286 14 0 chr4 49440497 49440567 -152887780 - MER21B LTR ERV1 -774 89 19 240 317 12 24 chr4 49440586 49440668 -152887679 - MER21B LTR ERV1 -770 93 13 258 32 0 0 chr4 49440923 49440954 -152887393 + (TG)n Simple_repeat Simple_repeat 2 32 0 229 229 0 0 chr4 49441092 49441153 -152887194 - LTR66 LTR ERVL -146 464 404 285 309 98 72 chr4 49441430 49441666 -152886681 - L2 LINE L2 -562 2752 2511 1088 302 67 58 chr4 49442024 49442607 -152885740 - MLT1G1 LTR MaLR -5 590 3 356 318 34 14 chr4 49443864 49444012 -152884335 - MIR SINE MIR -83 179 29 9313 219 45 19 chr4 49444101 49444769 -152883578 + L1PB1 LINE L1 2299 2948 -3203 2081 110 3 10 chr4 49444769 49445069 -152883278 + AluSx SINE Alu 1 298 -14 9313 219 45 19 chr4 49445069 49447791 -152880556 + L1PB1 LINE L1 2948 5804 -347 540 0 0 0 chr4 49447791 49447851 -152880496 + (TA)n Simple_repeat Simple_repeat 2 61 0 9313 219 45 19 chr4 49447851 49448201 -152880146 + L1PB1 LINE L1 5804 6143 -8 194 284 42 63 chr4 49448507 49448602 -152879745 + MIR SINE MIR 2 94 -168 535 237 39 39 chr4 49448614 49448783 -152879564 + MIR SINE MIR 71 241 -21 645 282 47 28 chr4 49450625 49450880 -152877467 + LTR33 LTR ERVL 14 273 -248 255 31 0 0 chr4 49450899 49450931 -152877416 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 883 127 12 92 chr4 49450986 49451159 -152877188 - AluSc SINE Alu -62 247 89 22 0 0 0 chr4 49452063 49452085 -152876262 + AT_rich Low_complexity Low_complexity 1 22 0 654 231 20 7 chr4 49452684 49452831 -152875516 - MER58B DNA MER1_type -5 336 188 180 158 0 0 chr4 49454432 49454470 -152873877 + (TA)n Simple_repeat Simple_repeat 2 39 0 187 304 0 0 chr4 49455331 49455377 -152872970 + MIR SINE MIR 207 252 -10 35 0 0 0 chr4 49457507 49457542 -152870805 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr4 49458781 49458823 -152869524 + AT_rich Low_complexity Low_complexity 1 42 0 25 83 0 0 chr4 49458850 49458910 -152869437 + AT_rich Low_complexity Low_complexity 1 60 0 22 0 0 0 chr4 49459620 49459642 -152868705 + AT_rich Low_complexity Low_complexity 1 22 0 289 302 87 24 chr4 49460196 49460322 -152868025 + MIR SINE MIR 110 243 -19 1734 179 0 26 chr4 49462339 49462646 -152865701 + AluJb SINE Alu 1 299 -13 26 30 0 0 chr4 49463834 49463867 -152864480 + AT_rich Low_complexity Low_complexity 1 33 0 944 123 14 0 chr4 49463873 49464011 -152864336 - AluY SINE Alu -169 142 3 252 254 0 0 chr4 49464235 49464306 -152864041 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 189 207 69 35 chr4 49464345 49464403 -152863944 + MIR3 SINE MIR 139 198 -10 291 393 55 22 chr4 49464856 49465131 -152863216 + L2 LINE L2 2558 2841 -473 1046 219 15 0 chr4 49465185 49465390 -152862957 + MER3 DNA MER1_type 2 209 0 49 66 0 0 chr4 49465774 49465865 -152862482 + AT_rich Low_complexity Low_complexity 1 91 0 513 0 0 0 chr4 49466519 49466576 -152861771 + (GGAA)n Simple_repeat Simple_repeat 2 58 0 542 78 23 55 chr4 49466738 49466866 -152861481 + (GGAA)n Simple_repeat Simple_repeat 1 124 0 245 194 45 0 chr4 49466870 49466937 -152861410 + GA-rich Low_complexity Low_complexity 4 73 0 234 246 18 0 chr4 49467816 49467873 -152860474 + L2 LINE L2 3256 3313 0 250 293 94 9 chr4 49468888 49468994 -152859353 + MIR SINE MIR 148 262 0 21 0 0 0 chr4 49469909 49469930 -152858417 + AT_rich Low_complexity Low_complexity 1 21 0 792 299 57 66 chr4 49469999 49470511 -152857836 + MLT1J LTR MaLR 5 511 0 221 319 58 0 chr4 49471138 49471207 -152857140 + MIR SINE MIR 49 121 -141 494 261 165 23 chr4 49471295 49471647 -152856700 - L1M4 LINE L1 -3276 2870 2469 8728 17 0 0 chr4 49472139 49473147 -152855200 - L1HS LINE L1 -1132 5014 4007 7960 9 0 2 chr4 49473141 49474271 -152854076 + L1HS LINE L1 5028 6155 0 * 879 231 8 15 chr4 49474372 49474640 -152853707 + L1HS LINE L1 5890 6155 0 25 0 0 0 chr4 49474647 49474672 -152853675 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr4 49474672 49474695 -152853652 + (A)n Simple_repeat Simple_repeat 1 23 0 680 363 50 28 chr4 49474695 49475251 -152853096 + L2 LINE L2 2746 3310 -3 354 153 0 0 chr4 49475511 49475570 -152852777 - L1M1 LINE L1 -705 5600 5542 307 228 97 61 chr4 49477406 49477520 -152850827 - L1ME3A LINE L1 -90 6080 5963 582 274 97 66 chr4 49477734 49477982 -152850365 - L1ME3A LINE L1 -370 5799 5560 1756 125 0 82 chr4 49477982 49478301 -152850046 - AluSx SINE Alu -19 293 1 582 274 97 66 chr4 49478301 49478586 -152849761 - L1ME3A LINE L1 -609 5560 5254 276 30 0 0 chr4 49478842 49478875 -152849472 + (TG)n Simple_repeat Simple_repeat 2 34 0 184 356 0 11 chr4 49479466 49479553 -152848794 + MIR SINE MIR 105 190 -72 24 0 0 0 chr4 49480196 49480220 -152848127 + AT_rich Low_complexity Low_complexity 1 24 0 206 118 0 0 chr4 49480407 49480441 -152847906 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6813 32 1 0 chr4 49480468 49481279 -152847068 - L1PA3 LINE L1 0 6155 5344 * 9602 27 7 17 chr4 49481271 49482475 -152845872 + L1PA3 LINE L1 4153 5344 -802 21 71 0 0 chr4 49482794 49482836 -152845511 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr4 49483272 49483296 -152845051 + AT_rich Low_complexity Low_complexity 1 24 0 2316 65 0 0 chr4 49484324 49484614 -152843733 - AluY SINE Alu -21 290 1 480 354 41 4 chr4 49484951 49485197 -152843150 - MIR SINE MIR -6 256 2 316 191 22 11 chr4 49485438 49485527 -152842820 + (TATG)n Simple_repeat Simple_repeat 3 92 0 21 0 0 0 chr4 49486193 49486214 -152842133 + AT_rich Low_complexity Low_complexity 1 21 0 248 197 0 33 chr4 49489150 49489211 -152839136 - MLT2D LTR ERVL 0 520 462 1384 210 17 10 chr4 49489263 49489558 -152838789 - MLT2D LTR ERVL -68 346 50 1649 186 27 30 chr4 49489558 49489886 -152838461 + Tigger3(Golem) DNA MER2_type 1 327 -2702 203 119 48 36 chr4 49490013 49490097 -152838250 + (TATATG)n Simple_repeat Simple_repeat 5 89 0 4242 155 77 5 chr4 49490108 49490939 -152837408 + Tigger3b DNA MER2_type 341 1231 0 367 85 0 0 chr4 49490943 49490990 -152837357 - MLT2D LTR ERVL -417 47 1 27 29 0 0 chr4 49491540 49491574 -152836773 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr4 49491640 49491665 -152836682 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr4 49491715 49491743 -152836604 + AT_rich Low_complexity Low_complexity 1 28 0 1761 184 12 12 chr4 49492231 49492562 -152835785 - MER44D DNA MER2_type -8 601 1 22 0 0 0 chr4 49492920 49492942 -152835405 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chr4 49493644 49493685 -152834662 + AT_rich Low_complexity Low_complexity 1 41 0 27 49 0 0 chr4 49493928 49493969 -152834378 + AT_rich Low_complexity Low_complexity 1 41 0 713 185 0 0 chr4 49493969 49494088 -152834259 - FLAM_C SINE Alu -14 119 1 1371 181 40 16 chr4 49494385 49494706 -152833641 + L1PB4 LINE L1 5827 6155 -1 378 0 0 0 chr4 49494955 49494997 -152833350 + (TA)n Simple_repeat Simple_repeat 2 43 0 23 0 0 0 chr4 49495522 49495545 -152832802 + AT_rich Low_complexity Low_complexity 1 23 0 1756 36 0 5 chr4 49495688 49495907 -152832440 + L1PA4 LINE L1 5938 6155 0 23 92 0 0 chr4 49496396 49496461 -152831886 + AT_rich Low_complexity Low_complexity 1 65 0 22 35 0 0 chr4 49496563 49496592 -152831755 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr4 49496619 49496668 -152831679 + AT_rich Low_complexity Low_complexity 1 49 0 186 246 0 0 chr4 49497054 49497115 -152831232 + GA-rich Low_complexity Low_complexity 2 62 0 28 61 0 0 chr4 49497385 49497434 -152830913 + AT_rich Low_complexity Low_complexity 1 49 0 1237 178 167 55 chr4 49500276 49500624 -152827723 + MLT1B LTR MaLR 3 389 -1 220 275 0 29 chr4 49500902 49500971 -152827376 + CT-rich Low_complexity Low_complexity 5 71 0 369 357 100 60 chr4 49501171 49502253 -152826094 + L2 LINE L2 1853 2977 -337 28 71 0 0 chr4 49505234 49505290 -152823057 + AT_rich Low_complexity Low_complexity 1 56 0 390 62 0 173 chr4 49505471 49505552 -152822795 - MER41A LTR ERV1 -90 464 398 516 292 38 5 chr4 49505644 49505829 -152822518 - L1M4 LINE L1 -2423 3723 3533 259 270 80 0 chr4 49505876 49505976 -152822371 + L1MC4 LINE L1 7699 7806 -236 * 399 232 54 27 chr4 49505973 49506158 -152822189 + L1M4 LINE L1 2764 2953 -3193 698 237 34 29 chr4 49506502 49506709 -152821638 - MER3 DNA MER1_type 0 209 2 1423 301 86 12 chr4 49506712 49507284 -152821063 + MER20B DNA MER1_type 1 614 -169 252 0 0 0 chr4 49507331 49507359 -152820988 + (CA)n Simple_repeat Simple_repeat 2 29 0 411 38 0 0 chr4 49507384 49507437 -152820910 + (TG)n Simple_repeat Simple_repeat 2 54 0 1727 182 0 3 chr4 49508273 49508569 -152819778 + AluJb SINE Alu 1 295 -17 21 0 0 0 chr4 49509247 49509268 -152819079 + AT_rich Low_complexity Low_complexity 1 21 0 537 16 0 0 chr4 49509526 49509588 -152818759 + (CA)n Simple_repeat Simple_repeat 2 63 0 581 319 72 17 chr4 49510249 49510810 -152817537 + L1MDa LINE L1 1455 2060 -4481 330 283 25 74 chr4 49511076 49511372 -152816975 + L1MDa LINE L1 2461 2733 -3988 2160 107 3 26 chr4 49511372 49511680 -152816667 + AluSp SINE Alu 1 301 -12 330 283 25 74 chr4 49511680 49511789 -152816558 + L1MDa LINE L1 2733 2846 -3875 3005 137 35 4 chr4 49511820 49512339 -152816008 + L1MA3 LINE L1 5769 6303 -2 274 247 62 62 chr4 49512361 49512507 -152815840 + L1MDa LINE L1 2824 2969 -3571 314 252 30 15 chr4 49512557 49512688 -152815659 + L1MDa LINE L1 3178 3310 -3230 300 283 34 73 chr4 49514101 49514334 -152814013 + HAL1b LINE L1 349 572 -776 1594 149 45 3 chr4 49514416 49514704 -152813643 - L1PA14 LINE L1 -6 6155 5856 209 227 0 0 chr4 49514805 49514849 -152813498 + A-rich Low_complexity Low_complexity 1 44 0 234 248 106 26 chr4 49515378 49515491 -152812856 + L1MDa LINE L1 4503 4624 -1916 234 381 0 0 chr4 49516230 49516293 -152812054 - MER91B DNA MER1_type -126 64 2 257 336 74 16 chr4 49516601 49516723 -152811624 - MIR3 SINE MIR -27 181 53 1047 265 66 18 chr4 49517758 49518118 -152810229 + MLT1I LTR MaLR 46 406 -3 319 237 51 51 chr4 49518398 49518516 -152809831 - MIR SINE MIR -105 157 40 1647 100 16 0 chr4 49518829 49519079 -152809268 + L1PA13 LINE L1 5908 6161 -2 195 307 148 0 chr4 49519761 49519849 -152808498 - MIR SINE MIR -109 153 53 189 417 52 0 chr4 49520135 49520250 -152808097 - L2 LINE L2 -18 3254 3134 1007 291 69 5 chr4 49520777 49521152 -152807195 + LTR16B LTR ERVL 1 399 -65 403 264 45 9 chr4 49521562 49521672 -152806675 - MER94 DNA DNA -19 115 2 24 0 0 0 chr4 49522058 49522082 -152806265 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 49522234 49522259 -152806088 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 49522474 49522496 -152805851 + AT_rich Low_complexity Low_complexity 1 22 0 299 338 15 15 chr4 49522577 49522713 -152805634 - MIR3 SINE MIR -6 202 67 283 296 0 57 chr4 49523317 49523405 -152804942 - L2 LINE L2 -5 3308 3226 222 355 82 0 chr4 49523410 49523520 -152804827 + MIR SINE MIR 16 134 -74 260 279 96 48 chr4 49524073 49524281 -152804066 + HAL1 LINE L1 1958 2175 -332 643 95 19 0 chr4 49524331 49524436 -152803911 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 1693 98 16 0 chr4 49525520 49525775 -152802572 - L1MA1 LINE L1 -9 6293 6035 351 333 8 0 chr4 49526061 49526181 -152802166 + CT-rich Low_complexity Low_complexity 4 124 0 385 255 38 0 chr4 49527203 49527309 -152801038 + L2 LINE L2 3203 3312 -1 359 304 40 16 chr4 49527322 49527447 -152800900 - MIR SINE MIR -90 172 45 425 275 12 84 chr4 49527477 49527644 -152800703 + L2 LINE L2 2619 2773 -541 4279 268 20 12 chr4 49527650 49529078 -152799269 - L1PA16 LINE L1 -2534 3612 2174 * 6860 213 24 7 chr4 49529077 49531542 -152796805 + L1PA16 LINE L1 3618 6162 -1 2175 136 24 27 chr4 49531753 49532129 -152796218 - THE1C LTR MaLR 0 375 1 314 303 67 18 chr4 49532244 49532409 -152795938 + L2 LINE L2 3141 3313 0 403 292 66 29 chr4 49535465 49535602 -152792745 - MER91B DNA MER1_type 0 190 49 246 295 105 21 chr4 49535815 49535910 -152792437 + L2 LINE L2 3209 3311 -2 501 58 0 0 chr4 49536138 49536207 -152792140 + (TC)n Simple_repeat Simple_repeat 2 70 0 303 296 23 0 chr4 49536209 49536297 -152792050 - L1MC4 LINE L1 -1339 6703 6614 210 191 0 0 chr4 49536297 49536339 -152792008 + (TA)n Simple_repeat Simple_repeat 2 43 0 287 278 0 0 chr4 49536339 49536429 -152791918 - L1MC4 LINE L1 -1339 6703 6614 301 282 47 0 chr4 49536446 49536565 -152791782 + L1MC4 LINE L1 6615 6703 -1339 197 219 0 0 chr4 49537154 49537195 -152791152 - L2 LINE L2 -11 3302 3262 26 0 0 0 chr4 49537363 49537389 -152790958 + AT_rich Low_complexity Low_complexity 1 26 0 1658 116 0 146 chr4 49537391 49537726 -152790621 - AluSx SINE Alu -26 286 1 324 166 7 159 chr4 49538771 49538916 -152789431 - L1ME4a LINE L1 -32 6089 5967 337 317 0 29 chr4 49539370 49539474 -152788873 + L2 LINE L2 3210 3310 -3 259 358 73 0 chr4 49539689 49539826 -152788521 - L3 LINE CR1 -189 1388 1242 192 40 0 0 chr4 49539880 49539905 -152788442 + (TG)n Simple_repeat Simple_repeat 2 26 0 219 385 48 0 chr4 49539914 49539997 -152788350 - L3 LINE CR1 -450 1127 1041 303 404 20 7 chr4 49540152 49540298 -152788049 + MIR SINE MIR 12 159 -103 379 282 69 27 chr4 49540328 49540516 -152787831 - HAL1 LINE L1 -899 1608 1413 33 25 0 0 chr4 49540523 49540563 -152787784 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr4 49542228 49542252 -152786095 + AT_rich Low_complexity Low_complexity 1 24 0 207 247 140 32 chr4 49542778 49542871 -152785476 - MIR3 SINE MIR -1 207 105 432 37 0 0 chr4 49543875 49543929 -152784418 + (CA)n Simple_repeat Simple_repeat 1 54 0 228 86 0 0 chr4 49545340 49545375 -152782972 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 23 33 0 0 chr4 49546285 49546315 -152782032 + AT_rich Low_complexity Low_complexity 1 30 0 898 261 9 9 chr4 49547321 49547539 -152780808 + MER20 DNA MER1_type 2 219 0 314 259 37 0 chr4 49547959 49548040 -152780307 - L2 LINE L2 0 3272 3189 486 239 0 18 chr4 49548046 49548159 -152780188 + MIR SINE MIR 116 226 -36 209 233 17 50 chr4 49548653 49548713 -152779634 - MIR SINE MIR 0 262 205 447 289 14 21 chr4 49548910 49549052 -152779295 + L2 LINE L2 3169 3309 -4 231 36 0 0 chr4 49549106 49549134 -152779213 + (TA)n Simple_repeat Simple_repeat 2 29 0 410 329 106 57 chr4 49549667 49550138 -152778209 + L2 LINE L2 1794 2287 -1027 346 259 59 0 chr4 49550358 49550443 -152777904 + MIR SINE MIR 163 252 -10 425 366 80 22 chr4 49550529 49550991 -152777356 + L2 LINE L2 2552 3048 -224 249 317 50 42 chr4 49551072 49551192 -152777155 - L2 LINE L2 0 3313 3193 180 320 133 16 chr4 49551259 49551387 -152776960 + L2 LINE L2 3170 3312 -1 22 0 0 0 chr4 49551522 49551544 -152776803 + AT_rich Low_complexity Low_complexity 1 22 0 295 374 45 7 chr4 49551658 49551813 -152776534 + MIR SINE MIR 37 197 -65 717 317 15 27 chr4 49551942 49552204 -152776143 - MIR SINE MIR -3 259 1 22 0 0 0 chr4 49552580 49552602 -152775745 + AT_rich Low_complexity Low_complexity 1 22 0 650 324 57 17 chr4 49552881 49553384 -152774963 + ERVL LTR ERVL 955 1515 -4249 1452 231 31 22 chr4 49553573 49553932 -152774415 + MLT1A1 LTR MaLR 2 363 -2 4818 317 68 19 chr4 49553936 49556493 -152771854 + ERVL LTR ERVL 1635 4335 -1429 4589 179 11 3 chr4 49556494 49557626 -152770721 + L1PA15 LINE L1 4886 6031 -134 2079 111 7 0 chr4 49557770 49558058 -152770289 - AluSc SINE Alu -19 290 1 2174 165 70 1 chr4 49558179 49558571 -152769776 + MSTA LTR MaLR 14 428 0 21 57 0 0 chr4 49559326 49559361 -152768986 + AT_rich Low_complexity Low_complexity 1 35 0 201 369 43 14 chr4 49559444 49559585 -152768762 + MER5B DNA MER1_type 11 155 -23 213 208 26 52 chr4 49560321 49560398 -152767949 + L3 LINE CR1 521 595 -982 2011 245 128 29 chr4 49560552 49561312 -152767035 - L1ME1 LINE L1 -6 6160 5326 13107 215 43 17 chr4 49561326 49562852 -152765495 - L1PB2 LINE L1 0 6867 5381 1952 125 7 37 chr4 49562852 49563149 -152765198 - AluSx SINE Alu -19 293 6 13107 215 43 17 chr4 49563149 49569127 -152759220 - L1PB2 LINE L1 -1486 5381 3 897 271 45 0 chr4 49569189 49569481 -152758866 - L1ME1 LINE L1 -850 5296 4992 2634 17 7 3 chr4 49569495 49569795 -152758552 - AluYb8 SINE Alu -17 301 1 1061 228 9 0 chr4 49569795 49570023 -152758324 + MLT2B1 LTR ERVL 3 232 -288 478 204 65 25 chr4 49570040 49570241 -152758106 + L1M4 LINE L1 3125 3333 -2813 530 246 76 6 chr4 49570248 49570419 -152757928 - MER58C DNA MER1_type -6 209 27 638 306 23 7 chr4 49570427 49570734 -152757613 + L1M4 LINE L1 3328 3639 -2507 710 241 20 41 chr4 49570780 49570975 -152757372 - MLT1D LTR MaLR 0 505 315 1065 274 78 8 chr4 49570980 49571338 -152757009 - L1MCc LINE L1 -6022 401 19 34 72 0 0 chr4 49572083 49572152 -152756195 + AT_rich Low_complexity Low_complexity 1 69 0 2515 31 3 0 chr4 49572445 49572735 -152755612 + AluY SINE Alu 20 310 -1 34 0 0 0 chr4 49573054 49573088 -152755259 + AT_rich Low_complexity Low_complexity 1 34 0 274 218 141 0 chr4 49573100 49573178 -152755169 + MER103 DNA DNA 52 140 -26 25 65 0 0 chr4 49573527 49573573 -152754774 + AT_rich Low_complexity Low_complexity 1 46 0 674 191 0 0 chr4 49574281 49574396 -152753951 + Tigger4(Zombi) DNA MER2_type 1 115 -2616 331 298 53 15 chr4 49574528 49574659 -152753688 + L2 LINE L2 3137 3272 0 198 204 23 0 chr4 49576096 49576140 -152752207 - MIR SINE MIR -14 248 204 2625 92 85 12 chr4 49577394 49577769 -152750578 + MLT2A1 LTR ERVL 1 410 -34 216 0 0 0 chr4 49577769 49577793 -152750554 + (TA)n Simple_repeat Simple_repeat 2 25 0 2625 92 85 12 chr4 49577793 49577830 -152750517 + MLT2A1 LTR ERVL 410 443 -1 6580 78 1 6 chr4 49577831 49578684 -152749663 + HERVL-A1 LTR ERVL 1 849 -4805 * 11791 83 13 2 chr4 49578668 49580226 -152748121 + HERVL-A1 LTR ERVL 4080 5654 0 2886 108 28 7 chr4 49580226 49580653 -152747694 + MLT2A1 LTR ERVL 1 436 -8 234 0 0 0 chr4 49580985 49581011 -152747336 + (TG)n Simple_repeat Simple_repeat 2 27 0 279 336 56 9 chr4 49581769 49581876 -152746471 + L2 LINE L2 3196 3307 -6 21 0 0 0 chr4 49581926 49581947 -152746400 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 49583006 49583043 -152745304 + AT_rich Low_complexity Low_complexity 1 37 0 2834 107 27 14 chr4 49583456 49584029 -152744318 - L1P4 LINE L1 -477 5691 5110 1367 199 13 23 chr4 49584029 49584335 -152744012 - AluJo SINE Alu -4 308 6 21 36 0 0 chr4 49584418 49584446 -152743901 + AT_rich Low_complexity Low_complexity 1 28 0 246 246 15 0 chr4 49584646 49584711 -152743636 + MER46C DNA MER2_type 263 328 -10 197 355 0 16 chr4 49584873 49584935 -152743412 + L2 LINE L2 3201 3261 -11 1923 94 71 4 chr4 49585975 49586284 -152742063 - AluSq SINE Alu 0 327 1 228 261 49 92 chr4 49586766 49586908 -152741439 - MER46C DNA MER2_type -178 160 25 251 302 249 10 chr4 49586936 49586983 -152741364 - MIR SINE MIR 0 262 227 2282 153 0 21 chr4 49586983 49587355 -152740992 - THE1B LTR MaLR 0 364 1 251 302 249 10 chr4 49587355 49587512 -152740835 - MIR SINE MIR -35 227 9 182 329 67 46 chr4 49587704 49587944 -152740403 - L2 LINE L2 -922 2392 2148 2202 151 8 30 chr4 49587970 49588342 -152740005 - THE1B LTR MaLR 0 364 1 29 28 0 0 chr4 49588476 49588512 -152739835 + AT_rich Low_complexity Low_complexity 1 36 0 462 149 214 24 chr4 49588718 49588845 -152739502 + MSTA LTR MaLR 207 362 -70 1828 257 60 21 chr4 49588845 49589327 -152739020 + L1PA12 LINE L1 16 516 -7065 5087 250 31 9 chr4 49589343 49590815 -152737532 + L1PA12 LINE L1 2390 3892 -3692 444 216 0 0 chr4 49590815 49590917 -152737430 + (CATATA)n Simple_repeat Simple_repeat 4 105 0 2194 160 5 19 chr4 49590936 49591305 -152737042 + THE1B LTR MaLR 1 364 0 760 137 61 0 chr4 49591305 49591436 -152736911 + THE1B-int LTR MaLR 1 139 -1441 1208 118 15 0 chr4 49591536 49591731 -152736616 + L1PA13 LINE L1 5966 6163 0 1965 121 50 0 chr4 49591807 49592104 -152736243 - AluSx SINE Alu 0 312 1 2487 187 36 28 chr4 49592274 49592776 -152735571 + MER67A LTR ERV1 25 530 -13 7055 44 3 0 chr4 49593158 49594020 -152734327 - L1P LINE L1 -1843 4303 3439 2361 32 0 0 chr4 49594020 49594296 -152734051 + L1PA5 LINE L1 5870 6148 -6 934 71 0 2 chr4 49594643 49594897 -152733450 + AluY SINE Alu 1 309 -2 357 332 87 29 chr4 49596420 49596661 -152731686 - MLT1I LTR MaLR -13 396 142 3916 41 0 4 chr4 49597175 49597701 -152730646 + L1PA4 LINE L1 5667 6190 0 449 193 167 0 chr4 49597726 49597840 -152730507 + L1PB4 LINE L1 6021 6153 -3 215 233 0 0 chr4 49598659 49598702 -152729645 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 261 308 121 0 chr4 49598703 49598794 -152729553 + MIR SINE MIR 90 191 -71 2622 186 21 40 chr4 49598876 49599457 -152728890 + MER101B LTR ERV1 1 570 0 382 243 19 28 chr4 49599474 49599581 -152728766 - L2 LINE L2 -20 3293 3188 2378 68 0 0 chr4 49599895 49600191 -152728156 + THE1B-int LTR MaLR 1285 1580 0 562 118 0 0 chr4 49600191 49600267 -152728080 + THE1B LTR MaLR 1 76 -288 6943 196 17 0 chr4 49600267 49601657 -152726690 + L1PA11 LINE L1 2543 3956 -2190 1539 43 0 0 chr4 49601657 49601840 -152726507 + L1PA3 LINE L1 5968 6153 -2 * 7473 159 34 0 chr4 49601835 49604025 -152724322 + L1PA11 LINE L1 3951 6172 -2 39 84 0 0 chr4 49604130 49604225 -152724122 + AT_rich Low_complexity Low_complexity 1 95 0 2194 55 0 0 chr4 49604941 49605213 -152723134 + L1PA3 LINE L1 5878 6149 -6 207 0 0 0 chr4 49605221 49605244 -152723103 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1182 221 101 45 chr4 49605453 49605829 -152722518 + MLT1E1 LTR MaLR 1 397 -257 231 246 53 53 chr4 49605951 49606065 -152722282 - MIR SINE MIR -57 205 92 236 152 152 22 chr4 49606259 49606351 -152721996 + L1ME4a LINE L1 6008 6111 -10 263 278 19 0 chr4 49606542 49606596 -152721751 + MIR SINE MIR 15 69 -193 234 363 0 67 chr4 49606657 49606792 -152721555 + MIR SINE MIR 14 139 -123 28 29 0 0 chr4 49606848 49606883 -152721464 + AT_rich Low_complexity Low_complexity 1 35 0 305 348 7 28 chr4 49607279 49607420 -152720927 - L2 LINE L2 -5 3308 3171 2094 121 3 0 chr4 49607421 49607711 -152720636 + AluSc SINE Alu 1 291 -18 250 221 0 53 chr4 49607712 49607807 -152720540 + L1MC4 LINE L1 6614 6703 -1339 315 310 0 0 chr4 49607808 49607895 -152720452 + L1MC4 LINE L1 6615 6701 -1341 189 147 0 0 chr4 49608995 49609029 -152719318 + (A)n Simple_repeat Simple_repeat 1 34 0 2307 98 3 0 chr4 49609237 49609543 -152718804 + AluSp SINE Alu 1 307 -6 540 302 69 51 chr4 49609543 49609934 -152718413 + MLT1J2 LTR MaLR 2 399 -51 428 380 45 4 chr4 49610838 49611080 -152717267 + MIR SINE MIR 3 254 -8 22 70 0 0 chr4 49611080 49611123 -152717224 + AT_rich Low_complexity Low_complexity 1 43 0 259 351 52 0 chr4 49611212 49611366 -152716981 - MIR SINE MIR -15 247 86 897 245 79 100 chr4 49611561 49612030 -152716317 - MLT1C LTR MaLR -6 461 3 22 0 0 0 chr4 49612835 49612857 -152715490 + AT_rich Low_complexity Low_complexity 1 22 0 628 220 234 14 chr4 49613394 49613744 -152714603 - L1ME3A LINE L1 -5 6165 5739 28 48 0 0 chr4 49613794 49613836 -152714511 + AT_rich Low_complexity Low_complexity 1 42 0 589 259 143 11 chr4 49614914 49615103 -152713244 + MIR SINE MIR 49 262 0 384 313 28 0 chr4 49615203 49615347 -152713000 + MIR SINE MIR 50 197 -65 1623 155 74 19 chr4 49615891 49616214 -152712133 + MER61A LTR ERV1 3 343 0 340 410 65 24 chr4 49617258 49617751 -152710596 + L2 LINE L2 2325 2837 -477 189 329 0 14 chr4 49617859 49617929 -152710418 + L2 LINE L2 2985 3053 -219 593 320 30 5 chr4 49618290 49618490 -152709857 + MIR SINE MIR 49 253 -9 21 0 0 0 chr4 49618911 49618932 -152709415 + AT_rich Low_complexity Low_complexity 1 21 0 272 374 143 25 chr4 49619106 49619539 -152708808 + L2 LINE L2 2830 3313 0 1850 163 21 3 chr4 49619588 49619919 -152708428 + MER1B DNA MER1_type 1 337 0 329 304 22 51 chr4 49620310 49620448 -152707899 - MIR SINE MIR -3 259 126 308 294 78 106 chr4 49620466 49620587 -152707760 - L1MEc LINE L1 -6122 274 162 2394 83 3 0 chr4 49620587 49620889 -152707458 - AluSp SINE Alu -10 303 1 308 294 78 106 chr4 49620889 49621012 -152707335 - L1MEc LINE L1 -6234 162 37 21 71 0 0 chr4 49621600 49621642 -152706705 + AT_rich Low_complexity Low_complexity 1 42 0 331 231 68 43 chr4 49621841 49621958 -152706389 + MIR SINE MIR 82 201 -61 416 298 36 74 chr4 49622753 49623465 -152704882 + L1MEd LINE L1 569 1253 -4866 4742 163 26 12 chr4 49623803 49624683 -152703664 + L1PB4 LINE L1 5263 6154 -2 298 268 105 30 chr4 49624677 49624972 -152703375 + L1MEd LINE L1 2913 3229 -2900 * 721 299 53 70 chr4 49624973 49625444 -152702903 + MLT1J LTR MaLR 47 509 -2 399 344 82 33 chr4 49625484 49625850 -152702497 - L2 LINE L2 -1898 1416 1033 577 208 0 9 chr4 49625930 49626075 -152702272 + FLAM_A SINE Alu 13 156 0 22 80 0 0 chr4 49626317 49626367 -152701980 + AT_rich Low_complexity Low_complexity 1 50 0 180 111 0 0 chr4 49628352 49628379 -152699968 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 355 222 9 9 chr4 49628494 49628602 -152699745 + (CATA)n Simple_repeat Simple_repeat 4 111 0 615 223 8 0 chr4 49629654 49629784 -152698563 + FLAM_A SINE Alu 1 131 -2 457 307 19 42 chr4 49629926 49630138 -152698209 + MIR SINE MIR 48 254 -8 1576 216 14 14 chr4 49630527 49630875 -152697472 + MLT1A1 LTR MaLR 10 357 -8 15516 34 1 3 chr4 49631100 49633743 -152694604 + L1PA4 LINE L1 3520 6161 0 446 258 107 56 chr4 49634090 49634268 -152694079 - MIR SINE MIR -12 250 64 21 0 0 0 chr4 49634671 49634692 -152693655 + AT_rich Low_complexity Low_complexity 1 21 0 309 399 75 4 chr4 49634730 49634958 -152693389 + HAL1b LINE L1 410 653 -695 555 245 37 83 chr4 49634971 49635091 -152693256 - MIR SINE MIR -1 261 137 1509 201 99 9 chr4 49635091 49635434 -152692913 - MLT1A2 LTR MaLR 0 374 1 555 245 37 83 chr4 49635434 49635460 -152692887 - MIR SINE MIR -125 137 111 2200 172 60 0 chr4 49635460 49635861 -152692486 - MSTB LTR MaLR -1 425 1 555 245 37 83 chr4 49635861 49635954 -152692393 - MIR SINE MIR -151 111 32 340 180 11 11 chr4 49636340 49636429 -152691918 + CT-rich Low_complexity Low_complexity 1 89 0 271 313 50 10 chr4 49636889 49636988 -152691359 - L3 LINE CR1 -1081 496 394 3990 196 54 34 chr4 49637064 49637280 -152691067 - L1MA10 LINE L1 -7 6327 6117 1959 155 0 3 chr4 49637280 49637576 -152690771 - AluSx SINE Alu -17 295 1 3990 196 54 34 chr4 49637576 49638328 -152690019 - L1MA10 LINE L1 -217 6117 5340 2031 204 35 4 chr4 49638327 49638789 -152689558 + L1 LINE L1 4318 4793 -1353 * 1566 134 21 90 chr4 49638806 49639141 -152689206 + MER44D DNA MER2_type 4 585 -24 2192 222 33 49 chr4 49639142 49639696 -152688651 + Tigger7 DNA MER2_type 2 564 -2023 3278 83 5 0 chr4 49639696 49640142 -152688205 - L1PA7 LINE L1 0 6154 5707 2192 222 33 49 chr4 49640142 49640217 -152688130 + Tigger7 DNA MER2_type 564 2506 -81 274 302 0 0 chr4 49640218 49640281 -152688066 - MER2 DNA MER2_type -3 342 280 1116 145 6 6 chr4 49640319 49640498 -152687849 - AluSg SINE Alu -88 222 44 1214 228 22 96 chr4 49640498 49640977 -152687370 + MLT2B3 LTR ERVL 128 507 -8 18125 211 37 26 chr4 49640986 49646637 -152681710 + ERVL-B3-B2 LTR ERVL 2 5755 -9 1999 229 45 11 chr4 49646639 49647080 -152681267 + MLT2B2 LTR ERVL 1 456 -59 525 80 0 0 chr4 49647080 49647155 -152681192 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 198 156 0 0 chr4 49647168 49647213 -152681134 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 641 226 0 8 chr4 49647236 49647360 -152680987 - FLAM_C SINE Alu -12 131 9 803 131 7 15 chr4 49647390 49647527 -152680820 - MLT2B1 LTR ERVL -384 136 1 10348 32 2 0 chr4 49648863 49650880 -152677467 - L1PA4 LINE L1 0 6155 4137 227 320 8 57 chr4 49652844 49652966 -152675381 + LTR67 LTR ERVL 102 217 -340 3942 30 2 0 chr4 49653082 49653556 -152674791 - L1PA3 LINE L1 -1 6154 5680 3499 31 0 0 chr4 49653556 49654102 -152674245 + L1PA3 LINE L1 5128 5673 -482 501 295 104 46 chr4 49654641 49654882 -152673465 + MIR SINE MIR 8 262 0 1409 269 67 20 chr4 49654915 49655409 -152672938 - LTR40a LTR ERVL 0 519 3 670 259 25 13 chr4 49655410 49655568 -152672779 - HERVL40 LTR ERVL 0 5530 5371 28 48 0 0 chr4 49655902 49655944 -152672403 + AT_rich Low_complexity Low_complexity 1 42 0 576 226 74 52 chr4 49656052 49656282 -152672065 + L1MEd LINE L1 1023 1257 -4862 1807 138 10 30 chr4 49657537 49657841 -152670506 + AluSx SINE Alu 1 298 -14 1338 189 32 32 chr4 49658284 49658596 -152669751 - AluJo SINE Alu 0 312 1 23 68 0 0 chr4 49659968 49660012 -152668335 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr4 49661024 49661053 -152667294 + AT_rich Low_complexity Low_complexity 1 29 0 196 53 53 0 chr4 49662494 49662532 -152665815 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 254 359 0 0 chr4 49662627 49662705 -152665642 + MIR SINE MIR 170 247 -15 226 152 0 22 chr4 49663173 49663219 -152665128 + (CA)n Simple_repeat Simple_repeat 2 46 0 30 93 0 0 chr4 49663753 49663839 -152664508 + AT_rich Low_complexity Low_complexity 1 86 0 32 26 0 0 chr4 49664666 49664705 -152663642 + AT_rich Low_complexity Low_complexity 1 39 0 24 64 0 39 chr4 49666414 49666492 -152661855 + AT_rich Low_complexity Low_complexity 1 75 0 483 48 0 0 chr4 49666509 49666571 -152661776 + (TG)n Simple_repeat Simple_repeat 1 62 0 398 329 102 36 chr4 49668690 49668915 -152659432 + L2 LINE L2 2557 2796 -518 362 385 60 25 chr4 49669053 49669370 -152658977 + L2 LINE L2 2967 3294 -19 27 49 0 0 chr4 49669375 49669416 -152658931 + AT_rich Low_complexity Low_complexity 1 41 0 363 321 95 33 chr4 49669866 49670109 -152658238 - MIR SINE MIR 0 262 5 22 35 0 0 chr4 49671542 49671571 -152656776 + AT_rich Low_complexity Low_complexity 1 29 0 346 286 124 54 chr4 49672481 49672722 -152655625 + L2 LINE L2 3015 3272 0 31 26 0 0 chr4 49673017 49673055 -152655292 + AT_rich Low_complexity Low_complexity 1 38 0 244 194 15 15 chr4 49674164 49674231 -152654116 + T-rich Low_complexity Low_complexity 1 67 0 281 388 35 61 chr4 49674540 49674897 -152653450 - L2 LINE L2 -36 3236 2890 233 278 137 35 chr4 49674897 49675033 -152653314 + MIR SINE MIR 2 148 -66 199 337 47 0 chr4 49675184 49675270 -152653077 - L2 LINE L2 -588 2726 2637 218 359 60 85 chr4 49675691 49675939 -152652408 - L2 LINE L2 -17 3255 3014 319 254 0 0 chr4 49677617 49677680 -152650667 - L2 LINE L2 0 3272 3210 27 29 0 0 chr4 49678003 49678037 -152650310 + AT_rich Low_complexity Low_complexity 1 34 0 596 296 53 16 chr4 49678982 49679225 -152649122 + MIR SINE MIR 1 252 -10 21 36 0 0 chr4 49679742 49679770 -152648577 + AT_rich Low_complexity Low_complexity 1 28 0 1992 143 3 0 chr4 49680119 49680420 -152647927 + AluSg1 SINE Alu 1 302 -7 470 149 11 0 chr4 49680420 49680507 -152647840 + GA-rich Low_complexity Low_complexity 1 88 0 260 186 17 0 chr4 49680562 49680621 -152647726 + (TA)n Simple_repeat Simple_repeat 1 60 0 3794 244 79 107 chr4 49680772 49682461 -152645886 - L1 LINE L1 -1044 5102 3368 372 43 0 0 chr4 49682461 49682507 -152645840 + (TA)n Simple_repeat Simple_repeat 1 46 0 3794 244 79 107 chr4 49682507 49682545 -152645802 - L1 LINE L1 -2778 3368 3330 1684 167 0 34 chr4 49682545 49682839 -152645508 - AluSx SINE Alu -28 284 1 3794 244 79 107 chr4 49682839 49682855 -152645492 - L1 LINE L1 -2816 3330 3315 189 0 0 0 chr4 49682855 49682876 -152645471 + (TG)n Simple_repeat Simple_repeat 2 22 0 3794 244 79 107 chr4 49682876 49683628 -152644719 - L1 LINE L1 -2831 3315 2674 131 39 0 0 chr4 49683708 49683888 -152644459 + AT_rich Low_complexity Low_complexity 1 180 0 2859 234 27 31 chr4 49683888 49684205 -152644142 - L1M4c LINE L1 -4749 1897 1580 2173 118 0 7 chr4 49684205 49684509 -152643838 - AluSx SINE Alu -4 308 7 2859 234 27 31 chr4 49684509 49685239 -152643108 - L1M4c LINE L1 -5066 1580 845 684 228 56 43 chr4 49685287 49685520 -152642827 + MER46A DNA MER2_type 1 236 0 186 43 0 0 chr4 49685561 49685584 -152642763 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4238 219 32 23 chr4 49685589 49686830 -152641517 + L1MA7 LINE L1 5039 6291 0 298 273 11 11 chr4 49688382 49688470 -152639877 + MIR SINE MIR 121 208 -54 187 283 38 0 chr4 49689393 49689446 -152638901 + L2 LINE L2 2927 2981 -291 370 287 9 19 chr4 49689482 49689590 -152638757 - L2 LINE L2 -5 3308 3202 28 0 0 0 chr4 49689818 49689846 -152638501 + AT_rich Low_complexity Low_complexity 1 28 0 366 365 95 32 chr4 49689917 49690394 -152637953 - L2 LINE L2 -1 3271 2737 1185 81 6 0 chr4 49690394 49690555 -152637792 - L1PA7 LINE L1 -7 6147 5986 366 365 95 32 chr4 49690555 49690618 -152637729 - L2 LINE L2 -535 2737 2679 681 196 76 31 chr4 49690640 49690865 -152637482 - L1MCa LINE L1 -4926 1500 1266 240 35 0 0 chr4 49690872 49690901 -152637446 + (TG)n Simple_repeat Simple_repeat 2 30 0 528 59 0 0 chr4 49690960 49691028 -152637319 + (TA)n Simple_repeat Simple_repeat 2 69 0 349 323 73 24 chr4 49691224 49691388 -152636959 - MLT1J LTR MaLR -144 367 196 703 319 10 5 chr4 49691621 49691825 -152636522 - MIR SINE MIR -56 206 2 279 229 96 0 chr4 49692196 49692279 -152636068 + MIR SINE MIR 101 191 -71 356 333 41 40 chr4 49694121 49694384 -152633963 + MIR SINE MIR 2 262 0 249 167 106 0 chr4 49694558 49694624 -152633723 + HSAT6 Satellite Satellite 26 98 -28 669 236 37 42 chr4 49695185 49695376 -152632971 - MER102a DNA MER1_type 0 330 141 255 344 8 24 chr4 49695775 49695900 -152632447 - MIR SINE MIR -50 212 90 33 66 0 0 chr4 49696452 49696513 -152631834 + AT_rich Low_complexity Low_complexity 1 61 0 25 0 0 0 chr4 49696986 49697011 -152631336 + AT_rich Low_complexity Low_complexity 1 25 0 2441 285 158 39 chr4 49697469 49698155 -152630192 - L2 LINE L2 0 3313 2710 1111 205 19 129 chr4 49698155 49698575 -152629772 + MLT1A2 LTR MaLR 1 374 0 2441 285 158 39 chr4 49698575 49699613 -152628734 - L2 LINE L2 -603 2710 1372 317 343 56 7 chr4 49699712 49699855 -152628492 + MLT1K LTR MaLR 114 263 -325 683 269 6 22 chr4 49700365 49700547 -152627800 - MIR SINE MIR -74 188 10 542 293 35 66 chr4 49700760 49701016 -152627331 + MLT1J LTR MaLR 230 477 -34 2317 89 0 0 chr4 49701246 49701549 -152626798 - AluY SINE Alu -8 303 1 22 0 0 0 chr4 49701599 49701621 -152626726 + AT_rich Low_complexity Low_complexity 1 22 0 43 56 0 0 chr4 49702266 49702337 -152626010 + AT_rich Low_complexity Low_complexity 1 71 0 21 57 0 0 chr4 49702659 49702694 -152625653 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr4 49702817 49702841 -152625506 + AT_rich Low_complexity Low_complexity 1 24 0 3723 226 32 20 chr4 49703444 49704750 -152623597 - L1MB5 LINE L1 -11 6163 4847 489 122 37 0 chr4 49704749 49704831 -152623516 - L1P LINE L1 -1417 4729 4645 * 305 97 0 139 chr4 49704849 49704867 -152623480 + L1 LINE L1 4515 4534 -1612 3602 12 0 0 chr4 49704867 49705279 -152623068 + L1PA3 LINE L1 5744 6155 0 305 97 0 139 chr4 49705279 49705306 -152623041 + L1 LINE L1 4534 4549 -1597 2222 152 5 19 chr4 49705306 49705675 -152622672 - THE1B LTR MaLR 0 364 1 305 97 0 139 chr4 49705675 49705700 -152622647 + L1 LINE L1 4549 4576 -1570 1041 178 0 0 chr4 49705703 49705894 -152622453 - L1P LINE L1 -1752 4394 4204 5751 111 21 1 chr4 49705894 49707195 -152621152 + L1PA13 LINE L1 4833 6153 -10 1893 244 13 42 chr4 49707209 49707366 -152620981 - L1MB5 LINE L1 -1287 4859 4699 279 0 0 0 chr4 49707366 49707397 -152620950 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2064 62 41 17 chr4 49707400 49707690 -152620657 - AluY SINE Alu -14 297 1 1893 244 13 42 chr4 49707690 49708150 -152620197 - L1MB5 LINE L1 -1449 4697 4256 1273 261 33 4 chr4 49708361 49708816 -152619531 - L1MB5 LINE L1 -2277 3869 3402 2911 119 25 5 chr4 49708864 49709262 -152619085 + MLT2A2 LTR ERVL 1 410 -43 312 91 0 0 chr4 49709262 49709306 -152619041 + (TA)n Simple_repeat Simple_repeat 2 45 0 2911 119 25 5 chr4 49709306 49709351 -152618996 + MLT2A2 LTR ERVL 410 453 0 4636 108 0 1 chr4 49709351 49709999 -152618348 + HERVL-A2-A2 LTR ERVL 1 647 -5007 33665 91 19 4 chr4 49709999 49714571 -152613776 + HERVL-A2-A2 LTR ERVL 1017 5654 0 2947 87 13 3 chr4 49714571 49714962 -152613385 + MLT2A2 LTR ERVL 1 395 -58 360 0 0 0 chr4 49714962 49715002 -152613345 + (TA)n Simple_repeat Simple_repeat 2 41 0 1841 253 51 8 chr4 49715083 49715715 -152612632 - L1MB5 LINE L1 -2835 3311 2653 24 96 0 0 chr4 49716462 49716535 -152611812 + AT_rich Low_complexity Low_complexity 1 73 0 22 70 0 0 chr4 49716714 49716757 -152611590 + AT_rich Low_complexity Low_complexity 1 43 0 204 171 24 0 chr4 49717523 49717564 -152610783 + (TAA)n Simple_repeat Simple_repeat 1 42 0 1071 217 21 69 chr4 49718482 49718814 -152609533 + L1MA10 LINE L1 6019 6334 0 201 328 0 0 chr4 49718820 49718881 -152609466 - MIR SINE MIR -8 254 194 372 367 63 38 chr4 49718883 49719382 -152608965 + L2 LINE L2 2732 3272 0 1575 174 31 0 chr4 49719546 49719833 -152608514 - AluJo SINE Alu -4 308 13 21 0 0 0 chr4 49721188 49721209 -152607138 + AT_rich Low_complexity Low_complexity 1 21 0 1101 193 16 49 chr4 49721324 49721568 -152606779 - MER46A DNA MER2_type 0 236 1 211 208 0 0 chr4 49721943 49721996 -152606351 + T-rich Low_complexity Low_complexity 1 53 0 2312 74 10 0 chr4 49722133 49722429 -152605918 + AluSc SINE Alu 1 299 -10 329 247 213 53 chr4 49722508 49722610 -152605737 - MER5A DNA MER1_type 0 189 105 2505 30 7 0 chr4 49722610 49722910 -152605437 + L1PA4 LINE L1 5854 6155 0 329 247 213 53 chr4 49722910 49722957 -152605390 - MER5A DNA MER1_type -84 105 16 183 129 0 0 chr4 49724568 49724599 -152603748 + (TA)n Simple_repeat Simple_repeat 2 32 0 247 273 61 0 chr4 49725051 49725117 -152603230 + L2 LINE L2 3171 3240 -32 21 0 0 0 chr4 49727941 49727962 -152600385 + AT_rich Low_complexity Low_complexity 1 21 0 283 176 54 14 chr4 49729105 49729179 -152599168 + MER116 DNA Mariner 3 79 -1 1972 135 0 0 chr4 49729302 49729590 -152598757 + AluSx SINE Alu 1 288 -24 387 0 0 0 chr4 49730602 49730645 -152597702 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 282 217 0 0 chr4 49730651 49730720 -152597627 + A-rich Low_complexity Low_complexity 1 69 0 270 125 0 0 chr4 49731047 49731095 -152597252 + (TC)n Simple_repeat Simple_repeat 2 49 0 24 32 0 0 chr4 49731952 49731983 -152596364 + AT_rich Low_complexity Low_complexity 1 31 0 5299 130 31 13 chr4 49731984 49732860 -152595487 - L1PA16 LINE L1 -10 6156 5265 411 345 56 35 chr4 49733311 49733421 -152594926 - L1ME3A LINE L1 -233 5937 5831 216 97 0 0 chr4 49733421 49733452 -152594895 + (CA)n Simple_repeat Simple_repeat 2 32 0 411 345 56 35 chr4 49733452 49733715 -152594632 - L1ME3A LINE L1 -339 5831 5684 1036 263 9 0 chr4 49733755 49733972 -152594375 - MER58A DNA MER1_type 0 224 6 266 328 97 18 chr4 49733976 49734308 -152594039 - L1ME3A LINE L1 -597 5569 5299 1149 302 149 12 chr4 49734798 49735456 -152592891 + Charlie7 DNA MER1_type 1 748 -1864 262 272 0 25 chr4 49735463 49735544 -152592803 + Charlie7 DNA MER1_type 2108 2186 -426 32 26 0 0 chr4 49735611 49735650 -152592697 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr4 49735741 49735766 -152592581 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr4 49735780 49735803 -152592544 + AT_rich Low_complexity Low_complexity 1 23 0 229 359 103 0 chr4 49736397 49736514 -152591833 - MIR3 SINE MIR -37 171 43 21 0 0 0 chr4 49737288 49737309 -152591038 + AT_rich Low_complexity Low_complexity 1 21 0 3561 205 107 19 chr4 49737672 49738968 -152589379 + L1MA9 LINE L1 4888 6274 -38 531 283 7 7 chr4 49739091 49739243 -152589104 + MIR SINE MIR 86 237 -25 257 349 28 28 chr4 49740107 49740213 -152588134 + L2 LINE L2 3208 3313 0 37 62 0 0 chr4 49740459 49740524 -152587823 + AT_rich Low_complexity Low_complexity 1 65 0 303 326 144 13 chr4 49741461 49741774 -152586573 + L2 LINE L2 1690 2043 -1271 4728 155 26 14 chr4 49742050 49743625 -152584722 - L1PA16 LINE L1 0 6166 4591 686 289 138 52 chr4 49744063 49744606 -152583741 + L2 LINE L2 2065 2654 -660 267 152 0 0 chr4 49745756 49745802 -152582545 + (TG)n Simple_repeat Simple_repeat 2 47 0 1059 23 0 8 chr4 49746110 49746240 -152582107 - L1PA2 LINE L1 0 6155 6027 643 232 11 74 chr4 49746652 49746842 -152581505 + LTR41 LTR ERVL 6 183 -590 402 74 0 0 chr4 49748029 49748083 -152580264 + (TA)n Simple_repeat Simple_repeat 1 54 0 243 0 0 0 chr4 49748082 49748109 -152580238 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 1451 199 44 4 chr4 49749250 49749521 -152578826 - AluJb SINE Alu -30 282 1 23 33 0 0 chr4 49749844 49749874 -152578473 + AT_rich Low_complexity Low_complexity 1 30 0 516 282 84 20 chr4 49751172 49751374 -152576973 - MIR SINE MIR -18 244 30 23 0 0 0 chr4 49751589 49751612 -152576735 + AT_rich Low_complexity Low_complexity 1 23 0 605 247 46 23 chr4 49751640 49751814 -152576533 + MER45A DNA AcHobo 1 178 0 273 257 14 0 chr4 49752622 49752692 -152575655 + GA-rich Low_complexity Low_complexity 4 74 0 2239 109 10 0 chr4 49752967 49753269 -152575078 - AluSq SINE Alu -8 305 1 436 308 111 57 chr4 49753286 49753673 -152574674 + L2 LINE L2 2906 3313 0 198 0 0 0 chr4 49755149 49755171 -152573176 + (A)n Simple_repeat Simple_repeat 1 22 0 186 43 0 0 chr4 49756552 49756575 -152571772 + (TGAG)n Simple_repeat Simple_repeat 1 23 0 654 192 99 29 chr4 49756681 49756853 -152571494 - MER3 DNA MER1_type -13 196 13 328 312 65 14 chr4 49756860 49756998 -152571349 + L2 LINE L2 3169 3313 0 226 236 31 79 chr4 49757023 49757150 -152571197 - L2 LINE L2 -81 3232 3112 994 317 205 0 chr4 49757153 49757676 -152570671 + L2 LINE L2 1989 2618 -696 1127 203 27 4 chr4 49757714 49757975 -152570372 - L1MB7 LINE L1 -5 6179 5913 840 241 25 0 chr4 49757982 49758223 -152570124 - L1M4 LINE L1 -2163 4481 4235 * 4535 236 68 52 chr4 49758217 49759856 -152568491 - L1M4 LINE L1 -4863 1679 16 435 282 81 79 chr4 49759877 49760154 -152568193 + L2 LINE L2 2697 3005 -308 1507 192 0 48 chr4 49760159 49760472 -152567875 - AluJo SINE Alu -14 298 1 227 274 14 0 chr4 49760486 49760559 -152567788 - MIR SINE MIR -5 257 184 * 350 358 53 43 chr4 49760550 49760852 -152567495 + L2 LINE L2 3004 3308 -5 327 269 134 27 chr4 49761148 49761297 -152567050 + MIR SINE MIR 68 232 -30 433 276 96 0 chr4 49761403 49761559 -152566788 + MIR SINE MIR 92 262 0 324 311 104 81 chr4 49761646 49762312 -152566035 - L2 LINE L2 -1192 2122 1442 2125 138 47 14 chr4 49762458 49762821 -152565526 + THE1C LTR MaLR 1 375 0 903 301 125 11 chr4 49762911 49763263 -152565084 + LTR16C LTR ERVL 86 477 -14 187 77 0 77 chr4 49764084 49764149 -152564198 + (TTTA)n Simple_repeat Simple_repeat 3 62 0 5375 203 42 5 chr4 49764229 49765434 -152562913 + L1 LINE L1 4071 5320 -826 7591 30 0 0 chr4 49765434 49766445 -152561902 + L1PA4 LINE L1 5142 6152 -3 1935 149 40 0 chr4 49766455 49766783 -152561564 + Tigger1 DNA MER2_type 2078 2418 0 253 206 16 24 chr4 49767934 49768060 -152560287 + (TA)n Simple_repeat Simple_repeat 2 126 0 327 188 0 16 chr4 49770694 49770758 -152557589 + MIR SINE MIR 86 148 -114 468 235 139 67 chr4 49771268 49771653 -152556694 + MLT1J2 LTR MaLR 75 450 0 320 276 18 74 chr4 49771675 49771838 -152556509 - L2 LINE L2 -5 3308 3155 205 298 39 29 chr4 49772039 49772143 -152556204 + L2 LINE L2 1971 2075 -1239 1509 197 3 31 chr4 49772400 49772713 -152555634 - AluJo SINE Alu 0 305 1 243 319 97 45 chr4 49772731 49773019 -152555328 + L2 LINE L2 2551 2853 -461 8632 42 2 2 chr4 49773162 49774237 -152554110 - L1P LINE L1 -1362 4784 3710 632 318 59 5 chr4 49774344 49774564 -152553783 - MIR SINE MIR -29 233 2 226 52 69 17 chr4 49777256 49777314 -152551033 + T-rich Low_complexity Low_complexity 4 64 0 404 296 0 0 chr4 49777714 49777812 -152550535 + MIR SINE MIR 34 131 -131 538 198 18 9 chr4 49777813 49777924 -152550423 - L2 LINE L2 -2 3311 3200 2216 105 16 0 chr4 49777932 49778236 -152550111 - AluSc SINE Alu 0 309 1 213 253 69 46 chr4 49778299 49778386 -152549961 + MIR SINE MIR 165 253 -9 2062 86 0 0 chr4 49779960 49780217 -152548130 + AluY SINE Alu 47 303 -8 432 188 30 0 chr4 49780414 49780515 -152547832 + L1MA10 LINE L1 6205 6308 -26 2292 138 5 19 chr4 49780515 49780884 -152547463 + THE1B LTR MaLR 1 364 0 10892 109 14 2 chr4 49780884 49782445 -152545902 + THE1B-int LTR MaLR 1 1580 0 1851 136 7 55 chr4 49782463 49782772 -152545575 + THE1B LTR MaLR 71 364 0 232 306 14 28 chr4 49783111 49783183 -152545164 - L2 LINE L2 -4 3309 3239 544 326 59 5 chr4 49784393 49784614 -152543733 + MIR SINE MIR 19 251 -11 1839 213 152 18 chr4 49784644 49785218 -152543129 - MLT1E2 LTR MaLR -5 621 2 416 362 33 21 chr4 49785830 49786073 -152542274 - MIR SINE MIR -16 246 1 331 330 84 21 chr4 49786784 49786975 -152541372 + MIR SINE MIR 22 224 -38 196 278 93 0 chr4 49787643 49787697 -152540650 - L2 LINE L2 -48 3224 3166 1087 271 21 51 chr4 49788108 49788444 -152539903 + MLT1I LTR MaLR 1 326 -83 208 318 136 15 chr4 49788753 49788885 -152539462 + MER5A DNA MER1_type 14 161 -28 477 288 96 45 chr4 49788919 49789232 -152539115 + MER102a DNA MER1_type 1 329 -1 299 295 36 22 chr4 49789476 49789615 -152538732 - Charlie8 DNA MER1_type -2160 257 117 203 327 0 0 chr4 49790135 49790187 -152538160 - L2 LINE L2 -254 3059 3008 244 335 64 27 chr4 49790477 49790665 -152537682 - L2 LINE L2 -1057 2257 2063 221 0 35 0 chr4 49791172 49791201 -152537146 + (CA)n Simple_repeat Simple_repeat 1 30 0 261 267 76 19 chr4 49791214 49791319 -152537028 - MIR3 SINE MIR -17 191 81 426 239 11 0 chr4 49792232 49792324 -152536023 + MER5A DNA MER1_type 11 103 -86 223 289 74 44 chr4 49792308 49792443 -152535904 - MIR SINE MIR -58 204 66 * 282 305 53 78 chr4 49792648 49792930 -152535417 + MLT1J LTR MaLR 234 508 -3 23 33 0 0 chr4 49793804 49793834 -152534513 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 49795191 49795213 -152533134 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr4 49795495 49795540 -152532807 + AT_rich Low_complexity Low_complexity 1 45 0 294 345 0 0 chr4 49796093 49796177 -152532170 + L2 LINE L2 3187 3270 -2 748 165 63 0 chr4 49796883 49797010 -152531337 + AluJ SINE Alu 1 135 -177 5333 78 44 62 chr4 49797016 49798326 -152530021 + SVA Other Other 1 866 -627 5811 24 0 0 chr4 49798716 49799344 -152529003 + SVA Other Other 753 1380 -6 1044 178 0 6 chr4 49799347 49799516 -152528831 + AluJ SINE Alu 129 296 -16 522 283 78 19 chr4 49801167 49801372 -152526975 - MIR SINE MIR -1 261 45 356 274 19 28 chr4 49802365 49802471 -152525876 - MIR SINE MIR -118 144 40 850 278 63 71 chr4 49802663 49803288 -152525059 - L2 LINE L2 -6 3307 2693 415 302 83 0 chr4 49803814 49804007 -152524340 - MIR SINE MIR -12 250 43 198 243 243 20 chr4 49804710 49804858 -152523489 - MIR SINE MIR -71 191 11 279 0 0 0 chr4 49805753 49805784 -152522563 + (TA)n Simple_repeat Simple_repeat 1 31 0 38 81 0 0 chr4 49806068 49806155 -152522192 + AT_rich Low_complexity Low_complexity 1 87 0 186 133 0 0 chr4 49808894 49808924 -152519423 + (A)n Simple_repeat Simple_repeat 1 30 0 294 29 0 0 chr4 49809593 49809628 -152518719 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 234 91 0 0 chr4 49809771 49809804 -152518543 + (GGAGA)n Simple_repeat Simple_repeat 4 36 0 540 0 0 0 chr4 49810477 49810537 -152517810 + (GA)n Simple_repeat Simple_repeat 1 60 0 315 71 0 0 chr4 49810665 49810707 -152517640 + (GGA)n Simple_repeat Simple_repeat 1 42 0 246 236 24 0 chr4 49813870 49813993 -152514354 + (TA)n Simple_repeat Simple_repeat 2 127 0 601 255 163 0 chr4 49815104 49815288 -152513059 - MIR SINE MIR -43 219 6 408 40 0 0 chr4 49815963 49816013 -152512334 + (CA)n Simple_repeat Simple_repeat 1 50 0 247 292 89 74 chr4 49816032 49816234 -152512113 + L2 LINE L2 2523 2727 -587 234 191 0 0 chr4 49816357 49816404 -152511943 + (CA)n Simple_repeat Simple_repeat 2 48 0 1568 191 96 6 chr4 49816717 49817052 -152511295 - MLT1A1 LTR MaLR 0 365 1 2006 186 66 10 chr4 49817195 49817604 -152510743 + MSTB1 LTR MaLR 1 432 0 532 340 97 0 chr4 49817663 49817869 -152510478 + MIR SINE MIR 16 241 -21 811 316 31 28 chr4 49818918 49819310 -152509037 + MLT1I LTR MaLR 10 402 -7 219 253 187 22 chr4 49820125 49820216 -152508131 + L2 LINE L2 3199 3304 -9 427 333 54 93 chr4 49820297 49820950 -152507397 + L2 LINE L2 2620 3263 -9 2114 125 3 0 chr4 49821253 49821548 -152506799 - AluSg1 SINE Alu -1 308 13 565 128 0 21 chr4 49823000 49823094 -152505253 + LTR26E LTR ERV1 1 92 -530 448 363 4 4 chr4 49823100 49823326 -152505021 - LTR26E-int LTR ERV1 -512 7608 7383 484 321 46 53 chr4 49823428 49823973 -152504374 - LTR26E-int LTR ERV1 -1964 5826 4822 1107 344 37 34 chr4 49824283 49825196 -152503151 - LTR26E-int LTR ERV1 -2837 4285 3510 210 143 0 0 chr4 49825281 49825316 -152503031 + (TA)n Simple_repeat Simple_repeat 1 35 0 596 113 0 0 chr4 49825316 49825413 -152502934 - L1MA1 LINE L1 0 6302 6206 33406 107 11 8 chr4 49825457 49831580 -152496767 + L1PA6 LINE L1 11 6154 0 569 338 48 35 chr4 49831591 49832256 -152496091 - LTR26E-int LTR ERV1 -3855 3267 2654 384 333 5 42 chr4 49834319 49834511 -152493836 - LTR26E-int LTR ERV1 -4977 969 785 297 350 38 31 chr4 49834899 49835059 -152493288 - LTR26E-int LTR ERV1 -6067 196 36 2884 174 45 11 chr4 49835098 49835671 -152492676 - LTR26E LTR ERV1 0 622 30 602 164 10 0 chr4 49835671 49835775 -152492572 - AluSg/x SINE Alu -8 304 200 1422 206 24 45 chr4 49836727 49836879 -152491468 - AluJo SINE Alu -26 286 141 2278 85 0 7 chr4 49836879 49837172 -152491175 - AluY SINE Alu -20 291 1 1422 206 24 45 chr4 49837172 49837311 -152491036 - AluJo SINE Alu -171 141 1 416 321 61 38 chr4 49837859 49838046 -152490301 - MIR SINE MIR 0 262 68 785 193 69 69 chr4 49838046 49838321 -152490026 + ORSL DNA AcHobo 1 275 0 416 321 61 38 chr4 49838321 49838345 -152490002 - MIR SINE MIR -194 68 46 228 111 0 0 chr4 49838553 49838589 -152489758 + (A)n Simple_repeat Simple_repeat 1 36 0 25 65 0 0 chr4 49839143 49839189 -152489158 + AT_rich Low_complexity Low_complexity 1 46 0 27 29 0 0 chr4 49839245 49839279 -152489068 + AT_rich Low_complexity Low_complexity 1 34 0 314 293 21 107 chr4 49839363 49839605 -152488742 + L2 LINE L2 359 579 -2735 1151 291 36 22 chr4 49839645 49839710 -152488637 + L2 LINE L2 2254 2317 -997 1600 153 206 19 chr4 49839710 49840070 -152488277 - MSTA LTR MaLR 0 428 2 1151 291 36 22 chr4 49840070 49840420 -152487927 + L2 LINE L2 2317 2675 -639 518 315 55 3 chr4 49840684 49840973 -152487374 - HAL1 LINE L1 -108 2399 2096 199 328 43 35 chr4 49841168 49841284 -152487063 + MIR SINE MIR 76 192 -70 325 254 92 22 chr4 49841640 49841825 -152486522 - L1MD3 LINE L1 -2 7993 7796 546 250 119 8 chr4 49841870 49842114 -152486233 - L1ME3A LINE L1 -57 6113 5843 2565 95 8 11 chr4 49842246 49842615 -152485732 - L1PB1 LINE L1 -2 6149 5782 355 176 33 52 chr4 49842615 49842768 -152485579 + (TA)n Simple_repeat Simple_repeat 1 150 0 6614 175 9 12 chr4 49842769 49844748 -152483599 - L1PB1 LINE L1 -365 5786 3818 278 238 89 30 chr4 49844761 49844862 -152483485 - MLT1J2 LTR MaLR -3 447 341 249 318 37 9 chr4 49844942 49845049 -152483298 - MLT1I LTR MaLR -196 213 104 271 311 0 14 chr4 49845406 49845480 -152482867 - L2 LINE L2 -1 3312 3240 24 0 0 0 chr4 49846087 49846111 -152482236 + AT_rich Low_complexity Low_complexity 1 24 0 247 343 192 0 chr4 49847207 49847405 -152480942 + MIR SINE MIR 16 251 -11 31 26 0 0 chr4 49847814 49847852 -152480495 + AT_rich Low_complexity Low_complexity 1 38 0 279 215 0 0 chr4 49848337 49848402 -152479945 + CT-rich Low_complexity Low_complexity 1 65 0 22 56 0 0 chr4 49848514 49848550 -152479797 + AT_rich Low_complexity Low_complexity 1 36 0 391 91 0 0 chr4 49849100 49849155 -152479192 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2094 134 0 0 chr4 49849155 49849439 -152478908 - AluSx SINE Alu -1 338 1 180 200 0 0 chr4 49849558 49849598 -152478749 + T-rich Low_complexity Low_complexity 1 40 0 * 1131 288 91 83 chr4 49849566 49849843 -152478504 + L2 LINE L2 2037 2310 -1003 974 211 156 46 chr4 49849843 49850170 -152478177 + MLT1A1 LTR MaLR 1 363 -2 1131 288 91 83 chr4 49850170 49851149 -152477198 + L2 LINE L2 2310 3313 0 363 154 0 0 chr4 49852235 49852300 -152476047 + (CA)n Simple_repeat Simple_repeat 2 66 0 1145 184 24 0 chr4 49853046 49853296 -152475051 - L1MA9 LINE L1 0 6312 6057 611 324 101 37 chr4 49853297 49853702 -152474645 + MLT1L LTR MaLR 167 597 -18 25 0 0 0 chr4 49853749 49853774 -152474573 + AT_rich Low_complexity Low_complexity 1 25 0 273 333 78 26 chr4 49854461 49854653 -152473694 - L2 LINE L2 -500 2814 2613 3968 195 46 57 chr4 49854952 49856249 -152472098 - L1MA9 LINE L1 -42 6270 4980 456 237 94 54 chr4 49856360 49856575 -152471772 + MIR SINE MIR 39 262 0 7463 36 0 0 chr4 49857010 49858201 -152470146 - L1PA3 LINE L1 0 6155 4963 8594 32 3 1 chr4 49858203 49859235 -152469112 + L1PA3 LINE L1 3942 4975 -1171 492 220 24 70 chr4 49859675 49859899 -152468448 - MER5C DNA MER1_type -2 322 4 681 239 34 6 chr4 49859995 49860171 -152468176 - L1MB1 LINE L1 0 6168 5988 23 0 0 53 chr4 49860177 49860193 -152468154 + AT_rich Low_complexity Low_complexity 1 16 -20 2013 131 0 0 chr4 49860193 49860534 -152467813 - AluSx SINE Alu 0 341 1 23 0 0 53 chr4 49860534 49860554 -152467793 + AT_rich Low_complexity Low_complexity 16 36 0 234 0 0 0 chr4 49860820 49860846 -152467501 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 30 0 0 0 chr4 49860856 49860886 -152467461 + AT_rich Low_complexity Low_complexity 1 30 0 1433 50 0 0 chr4 49860886 49861066 -152467281 - L1PA2 LINE L1 0 6155 5976 1511 0 0 0 chr4 49861066 49861235 -152467112 + L1PA2 LINE L1 5801 5969 -186 21 36 0 0 chr4 49861572 49861600 -152466747 + AT_rich Low_complexity Low_complexity 1 28 0 3727 115 62 2 chr4 49862651 49863251 -152465096 - L1MA3 LINE L1 -7 6298 5663 492 303 46 50 chr4 49863343 49863584 -152464763 - MIR SINE MIR -3 259 20 1817 146 18 4 chr4 49864537 49864840 -152463507 + AluSx SINE Alu 1 307 0 36 40 0 0 chr4 49865021 49865071 -152463276 + AT_rich Low_complexity Low_complexity 1 50 0 247 332 96 21 chr4 49865851 49866038 -152462309 - MIR SINE MIR -56 206 6 29 0 0 0 chr4 49866164 49866193 -152462154 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr4 49866220 49866256 -152462091 + AT_rich Low_complexity Low_complexity 1 36 0 315 282 37 86 chr4 49867162 49867325 -152461022 + MIR SINE MIR 99 253 -9 23 33 0 0 chr4 49868044 49868074 -152460273 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 49868232 49868253 -152460094 + AT_rich Low_complexity Low_complexity 1 21 0 2425 74 3 6 chr4 49869728 49870040 -152458307 + AluY SINE Alu 1 311 0 22 35 0 0 chr4 49870116 49870145 -152458202 + AT_rich Low_complexity Low_complexity 1 29 0 725 189 126 15 chr4 49870231 49870305 -152458042 + L1MA9 LINE L1 6078 6142 -170 243 0 0 0 chr4 49870305 49870332 -152458015 + (CA)n Simple_repeat Simple_repeat 1 27 0 725 189 126 15 chr4 49870332 49870463 -152457884 + L1MA9 LINE L1 6142 6306 -6 2182 113 7 0 chr4 49870897 49871198 -152457149 + AluSp SINE Alu 1 303 -10 2066 106 3 0 chr4 49872283 49872567 -152455780 + AluSp SINE Alu 1 285 -28 23 54 0 0 chr4 49872840 49872877 -152455470 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr4 49873627 49873660 -152454687 + AT_rich Low_complexity Low_complexity 1 33 0 452 327 6 42 chr4 49874616 49874784 -152453563 - MLT1J2 LTR MaLR -269 181 20 26 30 0 0 chr4 49875685 49875718 -152452629 + AT_rich Low_complexity Low_complexity 1 33 0 560 341 54 42 chr4 49875786 49876284 -152452063 + L1M3b LINE L1 1216 1719 -5777 5341 224 50 33 chr4 49876742 49879646 -152448701 + L1M3b LINE L1 2097 4943 -2622 2190 128 0 0 chr4 49879650 49879956 -152448391 + AluSx SINE Alu 6 311 -1 23 0 0 0 chr4 49980270 49980293 -152348054 + AT_rich Low_complexity Low_complexity 1 23 0 2105 121 17 0 chr4 49980297 49980594 -152347753 + AluSx SINE Alu 1 302 -10 1091 286 21 58 chr4 49981121 49981604 -152346743 + L2 LINE L2 2848 3312 -1 1409 157 21 0 chr4 49984641 49984922 -152343425 - L1MA4 LINE L1 -6 6294 6008 2486 76 0 0 chr4 49985811 49986114 -152342233 + AluY SINE Alu 1 303 -8 206 294 43 43 chr4 49987678 49987770 -152340577 - L2 LINE L2 -220 3093 3002 2427 93 0 0 chr4 49988117 49988427 -152339920 + AluSg SINE Alu 1 310 0 649 245 83 32 chr4 49988696 49988949 -152339398 - MLT1J1 LTR MaLR 0 446 181 1229 173 10 35 chr4 49988949 49989262 -152339085 + pTR5 LTR ERV1 760 1064 -1374 184 350 41 16 chr4 49989440 49989563 -152338784 - MIR SINE MIR -65 143 18 3855 179 47 22 chr4 49989751 49990234 -152338113 + L1MA9 LINE L1 5301 5819 -493 213 39 0 0 chr4 49990234 49990260 -152338087 + (CA)n Simple_repeat Simple_repeat 1 26 0 3855 179 47 22 chr4 49990260 49990688 -152337659 + L1MA9 LINE L1 5819 6235 -77 198 143 0 0 chr4 49990700 49990735 -152337612 + (TA)n Simple_repeat Simple_repeat 2 36 0 833 325 33 15 chr4 49990794 49991185 -152337162 - MLT1J LTR MaLR -63 448 51 740 170 14 41 chr4 49991329 49991476 -152336871 - FRAM SINE Alu -1 175 33 482 158 0 0 chr4 49991537 49991613 -152336734 - AluJo SINE Alu -15 297 222 * 732 134 8 39 chr4 49991611 49991738 -152336609 - AluJo SINE Alu -169 143 21 2478 194 18 24 chr4 49992162 49992944 -152335403 - L1P LINE L1 -1985 4161 3205 2376 4 0 0 chr4 49992944 49993222 -152335125 + L1HS LINE L1 5878 6155 0 1058 132 4 101 chr4 49993334 49993607 -152334740 - MER4A LTR ERV1 -99 565 261 1272 128 230 25 chr4 49993623 49993878 -152334469 + AluSx SINE Alu 1 303 0 466 107 95 0 chr4 49993881 49993965 -152334382 - MER4A LTR ERV1 -572 92 1 4052 195 14 6 chr4 49993966 49994877 -152333470 - L1P LINE L1 -3023 3123 2205 21 0 0 0 chr4 49994946 49994967 -152333380 + AT_rich Low_complexity Low_complexity 1 21 0 1724 149 0 86 chr4 49995596 49995932 -152332415 + AluJb SINE Alu 1 307 -5 254 271 0 14 chr4 49996210 49996280 -152332067 - MIR SINE MIR -108 154 86 792 201 6 13 chr4 49996338 49996497 -152331850 - FRAM SINE Alu -17 159 2 594 294 28 0 chr4 49997314 49997491 -152330856 + MIR SINE MIR 8 189 -73 23 0 0 0 chr4 49997592 49997615 -152330732 + AT_rich Low_complexity Low_complexity 1 23 0 249 295 115 39 chr4 49997629 49997785 -152330562 + MIR3 SINE MIR 36 203 -5 1801 156 11 7 chr4 49998318 49998601 -152329746 - AluSx SINE Alu -28 284 1 399 292 16 22 chr4 49999559 49999706 -152328641 + MIR SINE MIR 20 162 -46 1368 221 105 17 chr4 49999864 50000285 -152328062 + MER66A LTR ERV1 97 477 -1 5519 222 61 65 chr4 50000310 50002172 -152326175 + MER66A-int LTR ERV1 21 1873 -4803 519 278 10 76 chr4 50002174 50002372 -152325975 + MER66A-int LTR ERV1 2918 3102 -3574 2228 129 55 32 chr4 50002381 50002815 -152325532 + LOR1-int LTR ERV1 1125 1568 -218 2272 163 21 18 chr4 50002817 50003645 -152324702 + LOR1-int LTR ERV1 1199 4351 -529 35 78 0 10 chr4 50003874 50003934 -152324413 + AT_rich Low_complexity Low_complexity 1 61 -40 1874 101 8 0 chr4 50003934 50004181 -152324166 - AluSx SINE Alu -63 249 1 35 78 0 10 chr4 50004181 50004222 -152324125 + AT_rich Low_complexity Low_complexity 61 101 0 289 268 78 11 chr4 50004369 50004548 -152323799 - L1ME4a LINE L1 -240 5881 5691 191 267 228 10 chr4 50004591 50004692 -152323655 - L2 LINE L2 0 3313 3191 311 155 70 36 chr4 50004694 50004824 -152323523 + MER3 DNA MER1_type 1 203 -6 1345 233 37 79 chr4 50005440 50005993 -152322354 + L1MC4a LINE L1 6098 6601 -1184 2780 217 60 13 chr4 50005993 50006114 -152322233 + MER82 DNA MER2_type 1 115 -538 198 0 0 0 chr4 50006114 50006136 -152322211 + (CAAT)n Simple_repeat Simple_repeat 3 24 0 2780 217 60 13 chr4 50006136 50006632 -152321715 + MER82 DNA MER2_type 115 647 -6 261 57 0 0 chr4 50006638 50006673 -152321674 + (TG)n Simple_repeat Simple_repeat 2 36 0 3872 237 67 19 chr4 50006677 50007821 -152320526 + L1MC4a LINE L1 6609 7807 -1 338 226 19 0 chr4 50008957 50009063 -152319284 + (TTAAA)n Simple_repeat Simple_repeat 1 108 0 1534 47 0 0 chr4 50009347 50009538 -152318809 + L1PA4 LINE L1 5961 6151 -4 207 310 145 28 chr4 50009707 50009852 -152318495 - L2 LINE L2 -10 3303 3142 201 356 10 10 chr4 50010066 50010091 -152318256 + (TATATG)n Simple_repeat Simple_repeat 3 27 -79 1749 184 33 0 chr4 50010091 50010423 -152317924 - MER2 DNA MER2_type -1 343 1 201 356 10 10 chr4 50010423 50010501 -152317846 + (TATATG)n Simple_repeat Simple_repeat 26 106 0 226 162 0 0 chr4 50010600 50010637 -152317710 + L2 LINE L2 3277 3313 0 362 250 10 20 chr4 50011479 50011579 -152316768 + L2 LINE L2 2035 2133 -1181 1105 246 50 53 chr4 50011585 50012090 -152316257 - MLT1E LTR MaLR -3 590 8 531 229 207 38 chr4 50012096 50012410 -152315937 + L2 LINE L2 2131 2497 -817 185 274 94 0 chr4 50012842 50012948 -152315399 - L3 LINE CR1 -297 1280 1165 321 276 66 52 chr4 50013131 50013280 -152315067 + MIR SINE MIR 23 172 -62 190 280 220 64 chr4 50013300 50013483 -152314864 - MIR SINE MIR -7 255 31 6506 29 0 0 chr4 50013483 50014243 -152314104 + L1PA4 LINE L1 5393 6152 -3 190 280 220 64 chr4 50014243 50014277 -152314070 - MIR SINE MIR -231 31 4 351 0 0 0 chr4 50015272 50015311 -152313036 + (CA)n Simple_repeat Simple_repeat 2 40 0 222 298 60 99 chr4 50015394 50015545 -152312802 + L2 LINE L2 2608 2752 -562 7019 118 62 52 chr4 50016147 50017426 -152310921 + pTR5 LTR ERV1 1005 2295 -143 2268 167 28 26 chr4 50017578 50017922 -152310425 + MSTB LTR MaLR 1 348 -78 2339 88 3 0 chr4 50017922 50018218 -152310129 - AluSp SINE Alu -12 301 5 2268 167 28 26 chr4 50018218 50018298 -152310049 + MSTB LTR MaLR 348 426 0 275 278 37 56 chr4 50019146 50019308 -152309039 + L1MB4 LINE L1 4507 4665 -1481 723 264 148 42 chr4 50019952 50020338 -152308009 + L1MB4 LINE L1 5298 5724 -2084 6097 157 37 33 chr4 50020745 50021967 -152306380 - Tigger3b DNA MER2_type -1 1230 4 1942 177 41 5 chr4 50022220 50022278 -152306069 + L1MB4 LINE L1 5724 5778 -402 408 55 0 0 chr4 50022278 50022333 -152306014 + (CA)n Simple_repeat Simple_repeat 2 56 0 1942 177 41 5 chr4 50022333 50022715 -152305632 + L1MB4 LINE L1 5778 6180 0 407 260 30 10 chr4 50025124 50025224 -152303123 + L1MC4a LINE L1 5544 5645 -2163 229 195 37 49 chr4 50025329 50025411 -152302936 + L1MC4a LINE L1 5869 5949 -1859 444 269 228 6 chr4 50025506 50025673 -152302674 + MIR SINE MIR 29 232 -30 2802 28 0 0 chr4 50026344 50026662 -152301685 - AluYb8 SINE Alu 0 318 1 2284 86 3 0 chr4 50028382 50028684 -152299663 - AluSc SINE Alu -6 303 1 2543 33 0 13 chr4 50029293 50029593 -152298754 + AluY SINE Alu 1 296 -15 297 229 29 0 chr4 50030185 50030255 -152298092 + MER94 DNA DNA 1 72 -62 1827 106 4 4 chr4 50030434 50030688 -152297659 + AluSq SINE Alu 34 287 -26 1093 239 75 22 chr4 50030935 50031122 -152297225 + MER114 LTR ERV 93 269 -379 2216 89 7 13 chr4 50031122 50031425 -152296922 - AluSg SINE Alu -9 301 1 1093 239 75 22 chr4 50031425 50031730 -152296617 + MER114 LTR ERV 269 611 -37 21 0 0 0 chr4 50032182 50032203 -152296144 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 50032314 50032335 -152296012 + AT_rich Low_complexity Low_complexity 1 21 0 2225 143 8 27 chr4 50032432 50032803 -152295544 - THE1B LTR MaLR 0 364 1 2289 100 0 0 chr4 50034590 50034880 -152293467 - AluSg SINE Alu -16 294 5 727 278 116 80 chr4 50035015 50035530 -152292817 + MLT1G LTR MaLR 1 536 -6 2017 146 0 3 chr4 50035555 50035850 -152292497 + AluSx SINE Alu 1 294 -18 315 341 0 7 chr4 50036294 50036432 -152291915 - L2 LINE L2 -339 2974 2838 2039 164 40 24 chr4 50036618 50036995 -152291352 + MLT1B LTR MaLR 1 383 -7 644 315 31 23 chr4 50037069 50037326 -152291021 - L2 LINE L2 -513 2801 2543 480 288 146 26 chr4 50037383 50037616 -152290731 - MIR SINE MIR -1 261 1 236 195 0 0 chr4 50037836 50037877 -152290470 + L2 LINE L2 3215 3255 -17 300 284 108 51 chr4 50039014 50039599 -152288748 + L1MC4a LINE L1 5289 5870 -300 26 30 0 0 chr4 50039609 50039642 -152288705 + AT_rich Low_complexity Low_complexity 1 33 0 185 0 40 0 chr4 50040349 50040374 -152287973 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 2153 276 184 35 chr4 50040531 50041926 -152286421 + L2 LINE L2 1609 3219 -94 779 327 64 55 chr4 50041932 50042828 -152285519 + L2 LINE L2 2392 3313 0 207 0 0 0 chr4 50044540 50044563 -152283784 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2174 96 10 23 chr4 50045322 50045625 -152282722 + AluSx SINE Alu 1 299 -13 391 314 68 8 chr4 50045683 50045801 -152282546 + MIR SINE MIR 21 145 -63 569 216 0 9 chr4 50045925 50046041 -152282306 + MER66A-int LTR ERV1 4319 4433 -2243 481 165 51 0 chr4 50046044 50046123 -152282224 + MER4B LTR ERV1 79 161 -449 1183 226 4 12 chr4 50046124 50046447 -152281900 + MER66A-int LTR ERV1 4608 6176 -1580 2193 56 30 0 chr4 50046732 50047035 -152281312 - AluY SINE Alu 0 313 3 2617 162 22 12 chr4 50047060 50047555 -152280792 - L1PB3 LINE L1 -5 6149 5650 10020 173 23 32 chr4 50047555 50049420 -152278927 + MER66A-int LTR ERV1 4828 6676 0 753 232 126 28 chr4 50049466 50049778 -152278569 + MER66A LTR ERV1 97 373 -105 10675 199 16 9 chr4 50049780 50052284 -152276063 - L1PA14 LINE L1 -2305 5279 2760 7120 184 20 1 chr4 50052280 50054582 -152273765 + L1PA14 LINE L1 5279 7599 0 509 198 0 0 chr4 50054592 50054678 -152273669 + MER66B LTR ERV1 401 486 0 590 293 11 6 chr4 50054742 50054916 -152273431 + MIR SINE MIR 5 179 -83 6235 57 6 1 chr4 50054920 50055705 -152272642 - L1PA7 LINE L1 -4 6150 5362 1972 68 0 0 chr4 50055765 50056017 -152272330 - L1PA5 LINE L1 -1 6153 5902 2298 76 3 7 chr4 50058498 50058799 -152269548 - AluY SINE Alu -11 300 1 2402 70 0 10 chr4 50059171 50059483 -152268864 - AluY SINE Alu -2 309 1 1305 80 11 0 chr4 50059683 50059859 -152268488 + L1MA2 LINE L1 6119 6296 -8 31 26 0 0 chr4 50059859 50059897 -152268450 + AT_rich Low_complexity Low_complexity 1 38 0 310 318 19 39 chr4 50060551 50060705 -152267642 + L1ME4a LINE L1 5971 6121 0 1834 294 182 20 chr4 50061136 50062265 -152266082 - L2 LINE L2 0 3313 1990 2037 114 80 17 chr4 50063514 50063866 -152264481 + THE1C LTR MaLR 2 375 0 439 229 59 33 chr4 50063866 50064019 -152264328 + MER103 DNA DNA 8 164 -2 256 354 111 0 chr4 50064156 50064255 -152264092 + L2 LINE L2 3148 3257 -15 518 223 126 28 chr4 50064408 50064592 -152263755 + MER69 DNA AcHobo 2085 2300 -226 5430 133 12 13 chr4 50064592 50066388 -152261959 + L1PA14 LINE L1 4331 6152 -9 518 223 126 28 chr4 50066388 50066450 -152261897 + MER69 DNA AcHobo 2300 2355 -171 285 321 109 53 chr4 50068773 50069113 -152259234 + L2 LINE L2 2187 2545 -769 1815 153 0 24 chr4 50069165 50069460 -152258887 - AluJo SINE Alu -22 290 3 221 169 15 108 chr4 50069669 50069734 -152258613 + L2 LINE L2 3188 3246 -67 208 305 0 0 chr4 50070548 50070607 -152257740 - MIR SINE MIR -1 261 203 2259 223 94 37 chr4 50070642 50071323 -152257024 - LTR68 LTR ERV1 0 740 17 1758 167 66 14 chr4 50071323 50071670 -152256677 + MLT1A1 LTR MaLR 1 365 0 2259 223 94 37 chr4 50071670 50071688 -152256659 - LTR68 LTR ERV1 -723 17 1 2313 231 16 46 chr4 50072332 50072899 -152255448 + MLT2B3 LTR ERVL 5 554 0 1517 134 0 0 chr4 50073484 50073708 -152254639 + AluSg/x SINE Alu 86 309 -3 3478 141 29 20 chr4 50074137 50074734 -152253613 + MER7C DNA MER2_type 1 602 0 358 279 130 65 chr4 50074809 50075117 -152253230 + L1M4 LINE L1 4928 5255 -891 254 217 63 42 chr4 50075121 50075264 -152253083 + L1M LINE L1 5260 5405 -759 180 77 0 0 chr4 50076789 50076815 -152251532 + (TG)n Simple_repeat Simple_repeat 2 27 0 202 259 17 0 chr4 50076821 50076879 -152251468 + (TA)n Simple_repeat Simple_repeat 1 59 0 25 31 0 0 chr4 50076916 50076948 -152251399 + AT_rich Low_complexity Low_complexity 1 32 0 1416 148 209 11 chr4 50081773 50082056 -152246291 + MER1B DNA MER1_type 1 339 0 355 286 165 43 chr4 50082183 50082438 -152245909 + HAL1b LINE L1 1002 1287 -61 993 186 58 18 chr4 50083080 50083306 -152245041 - MER96B DNA MER1_type? -182 235 1 288 351 134 15 chr4 50083337 50083471 -152244876 + L2 LINE L2 3118 3267 -5 421 307 26 0 chr4 50083729 50083843 -152244504 - MIR3 SINE MIR -7 201 85 201 304 38 25 chr4 50084029 50084108 -152244239 + L3 LINE CR1 1489 1568 -9 486 49 0 0 chr4 50084635 50084696 -152243651 + (TTA)n Simple_repeat Simple_repeat 2 62 0 23 0 0 0 chr4 50084707 50084730 -152243617 + AT_rich Low_complexity Low_complexity 1 23 0 291 28 0 0 chr4 50084991 50085027 -152243320 + (CAA)n Simple_repeat Simple_repeat 1 36 0 200 271 17 0 chr4 50085058 50085117 -152243230 + L2 LINE L2 3250 3309 -4 243 292 0 52 chr4 50085246 50085342 -152243005 + MIR3 SINE MIR 114 204 -4 255 271 0 0 chr4 50086395 50086454 -152241893 + L2 LINE L2 3250 3308 -5 21 82 0 0 chr4 50087047 50087096 -152241251 + AT_rich Low_complexity Low_complexity 1 49 0 2071 296 63 13 chr4 50089671 50090351 -152237996 + L1MEc LINE L1 35 748 -5648 855 264 47 80 chr4 50090414 50090777 -152237570 + MLT1H LTR MaLR 1 351 -198 342 306 40 16 chr4 50091152 50091276 -152237071 - MIR3 SINE MIR -7 201 75 1580 227 28 11 chr4 50091396 50091854 -152236493 + LTR37B LTR ERV1 1 466 -2 628 308 85 5 chr4 50094158 50094369 -152233978 + MIR SINE MIR 17 244 -18 1706 63 5 0 chr4 50094566 50094789 -152233558 + L1PA7 LINE L1 5926 6149 -5 2262 100 3 3 chr4 50095204 50095513 -152232834 - AluSp SINE Alu -4 309 1 207 0 0 0 chr4 50096887 50096910 -152231437 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 307 385 159 13 chr4 50096912 50097138 -152231209 - L2 LINE L2 -38 3234 2976 450 299 111 18 chr4 50097414 50097631 -152230716 - MIR SINE MIR -13 249 13 21 0 0 0 chr4 50098013 50098034 -152230313 + AT_rich Low_complexity Low_complexity 1 21 0 668 293 67 38 chr4 50099347 50099586 -152228761 + MIR SINE MIR 17 262 0 475 214 26 26 chr4 50100165 50100282 -152228065 - L2 LINE L2 -3 3310 3194 1571 116 0 22 chr4 50100482 50100706 -152227641 + AluSg/x SINE Alu 82 300 -10 447 167 114 53 chr4 50101082 50101196 -152227151 - L2 LINE L2 0 3313 3193 265 364 82 29 chr4 50101410 50101726 -152226621 + L2 LINE L2 2555 2887 -427 473 175 9 35 chr4 50101858 50101972 -152226375 - L1MA4A LINE L1 -4 6299 6189 1023 434 3 9 chr4 50102008 50102324 -152226023 + L1MA9 LINE L1 5963 6276 -36 611 276 111 12 chr4 50102376 50102619 -152225728 + LTR16C LTR ERVL 225 491 0 293 339 63 67 chr4 50102625 50103032 -152225315 + L2 LINE L2 2871 3268 -4 310 284 0 0 chr4 50104732 50104799 -152223548 + L2 LINE L2 3247 3313 0 22 0 0 0 chr4 50104966 50104988 -152223359 + AT_rich Low_complexity Low_complexity 1 22 0 310 215 0 19 chr4 50105571 50105678 -152222669 + GA-rich Low_complexity Low_complexity 1 105 0 489 229 126 56 chr4 50105838 50106069 -152222278 - MLT1G1 LTR MaLR -2 593 347 288 0 0 0 chr4 50108850 50108882 -152219465 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 49 32 0 0 chr4 50109398 50109461 -152218886 + AT_rich Low_complexity Low_complexity 1 63 0 402 173 0 0 chr4 50109874 50109949 -152218398 + (TG)n Simple_repeat Simple_repeat 2 76 0 24 32 0 0 chr4 50110964 50110995 -152217352 + AT_rich Low_complexity Low_complexity 1 31 0 226 211 40 66 chr4 50111112 50111188 -152217159 - L2 LINE L2 -6 3266 3193 734 260 151 5 chr4 50112037 50112256 -152216091 + MIR SINE MIR 12 262 0 2249 90 7 3 chr4 50112408 50112707 -152215640 + AluSq SINE Alu 1 300 -13 229 336 109 29 chr4 50112772 50112909 -152215438 - MIR3 SINE MIR -25 183 36 611 280 36 27 chr4 50112966 50113191 -152215156 + MIR SINE MIR 32 258 -4 236 346 0 0 chr4 50113828 50113906 -152214441 - L2 LINE L2 -1007 2307 2230 303 319 50 14 chr4 50115191 50115332 -152213015 - MIR SINE MIR 0 262 117 435 280 85 30 chr4 50115882 50116082 -152212265 + MIR SINE MIR 50 260 -2 214 250 16 16 chr4 50116134 50116198 -152212149 + (TA)n Simple_repeat Simple_repeat 1 64 0 410 302 148 35 chr4 50116241 50116443 -152211904 + MIR SINE MIR 6 230 -32 355 273 10 10 chr4 50117013 50117112 -152211235 + MARNA DNA Mariner 385 483 -103 208 244 0 0 chr4 50117239 50117284 -152211063 + CT-rich Low_complexity Low_complexity 2 46 0 210 71 0 0 chr4 50117892 50117920 -152210427 + (A)n Simple_repeat Simple_repeat 1 28 0 279 54 0 0 chr4 50117968 50118005 -152210342 + (TG)n Simple_repeat Simple_repeat 2 38 0 22 70 0 0 chr4 50118222 50118265 -152210082 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr4 50118407 50118435 -152209912 + AT_rich Low_complexity Low_complexity 1 28 0 549 314 84 54 chr4 50118678 50119306 -152209041 + L1M4 LINE L1 2791 3437 -2709 380 246 44 95 chr4 50119478 50119730 -152208617 + L2 LINE L2 3075 3313 0 183 156 0 0 chr4 50119967 50119999 -152208348 + GA-rich Low_complexity Low_complexity 1 32 0 5787 159 19 10 chr4 50120340 50121430 -152206917 + L1MA1 LINE L1 4239 5349 -840 2570 110 0 0 chr4 50121430 50121785 -152206562 + THE1A LTR MaLR 1 355 0 5787 159 19 10 chr4 50121785 50122443 -152205904 + L1MA1 LINE L1 5349 6000 -189 197 326 23 35 chr4 50123393 50123479 -152204868 + MIR3 SINE MIR 8 92 -116 237 268 108 108 chr4 50126478 50126635 -152201712 + MIR SINE MIR 31 187 -75 785 270 63 8 chr4 50126961 50127198 -152201149 - MIR SINE MIR -2 260 11 204 247 97 84 chr4 50127644 50127798 -152200549 - MIR SINE MIR -28 234 79 25 51 0 0 chr4 50128398 50128437 -152199910 + AT_rich Low_complexity Low_complexity 1 39 0 211 191 0 0 chr4 50129624 50129666 -152198681 + (CA)n Simple_repeat Simple_repeat 1 42 0 201 189 0 19 chr4 50129700 50129753 -152198594 + (TA)n Simple_repeat Simple_repeat 2 53 0 1689 219 20 5 chr4 50130434 50130836 -152197511 - L1MA10 LINE L1 -2 6332 5925 654 317 80 5 chr4 50130979 50131203 -152197144 + MIR SINE MIR 18 258 -4 1561 196 25 41 chr4 50131203 50131571 -152196776 + MLT1A1 LTR MaLR 1 362 -3 565 279 86 46 chr4 50132832 50133112 -152195235 - L3b LINE CR1 -3 1580 1290 529 316 31 58 chr4 50134179 50134505 -152193842 + L2 LINE L2 2494 2810 -504 267 54 0 0 chr4 50134662 50134699 -152193648 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 28 48 0 0 chr4 50134712 50134754 -152193593 + AT_rich Low_complexity Low_complexity 1 42 0 850 173 0 11 chr4 50135220 50135399 -152192948 + GA-rich Low_complexity Low_complexity 4 180 0 21 0 0 0 chr4 50135881 50135902 -152192445 + AT_rich Low_complexity Low_complexity 1 21 0 212 151 38 57 chr4 50136401 50136412 -152191935 + GA-rich Low_complexity Low_complexity 2 12 -41 2187 125 3 0 chr4 50136412 50136724 -152191623 + AluSp SINE Alu 1 313 0 212 151 38 57 chr4 50136724 50136765 -152191582 + GA-rich Low_complexity Low_complexity 12 53 0 289 184 0 0 chr4 50137660 50137709 -152190638 + MIR SINE MIR 65 113 -149 276 305 32 46 chr4 50138001 50138189 -152190158 + MIR SINE MIR 23 262 0 460 229 18 28 chr4 50139035 50139144 -152189203 - MER5A DNA MER1_type -43 146 39 399 299 17 57 chr4 50139554 50139731 -152188616 - L2 LINE L2 -3 3269 3100 220 286 0 29 chr4 50139877 50139947 -152188400 + L2 LINE L2 3176 3243 -70 248 299 47 56 chr4 50140029 50140136 -152188211 + L2 LINE L2 3132 3237 -35 214 175 0 0 chr4 50140775 50140815 -152187532 + (CAGA)n Simple_repeat Simple_repeat 4 43 0 198 0 0 0 chr4 50142481 50142503 -152185844 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 411 38 0 0 chr4 50142502 50142555 -152185792 + (GA)n Simple_repeat Simple_repeat 1 53 0 328 320 33 8 chr4 50143081 50143203 -152185144 + L2 LINE L2 3143 3267 -5 1359 197 11 25 chr4 50143390 50143674 -152184673 - AluJo SINE Alu -24 288 9 1143 220 64 105 chr4 50145213 50145745 -152182602 - L1MA10 LINE L1 -43 6291 5782 263 197 0 30 chr4 50145716 50145782 -152182565 + L1MC4 LINE L1 6588 6646 -1139 * 1642 158 4 7 chr4 50145807 50146079 -152182268 - L1MA10 LINE L1 -523 5789 5519 27 29 0 0 chr4 50146285 50146319 -152182028 + AT_rich Low_complexity Low_complexity 1 34 0 2257 85 0 7 chr4 50146469 50146774 -152181573 + AluY SINE Alu 1 303 -8 487 320 75 3 chr4 50147319 50147641 -152180706 + L1ME3 LINE L1 5553 5897 -265 286 225 0 14 chr4 50147858 50147929 -152180418 + MER72 LTR ERV1 410 479 -243 546 239 81 29 chr4 50147956 50148165 -152180182 + LTR45 LTR ERV1 304 523 -2 640 274 87 72 chr4 50148460 50149004 -152179343 - MLT1H1 LTR MaLR -5 537 7 1822 178 32 87 chr4 50149072 50149153 -152179194 + MLT2D LTR ERVL 1 85 -329 2554 52 0 0 chr4 50149153 50149460 -152178887 - AluY SINE Alu -4 307 1 1822 178 32 87 chr4 50149460 50149816 -152178531 + MLT2D LTR ERVL 85 414 0 1010 192 43 118 chr4 50200752 50201143 -152127204 - MLT1A1 LTR MaLR -2 363 2 27 62 0 0 chr4 50201366 50201414 -152126933 + AT_rich Low_complexity Low_complexity 1 48 0 29 28 0 0 chr4 50201510 50201546 -152126801 + AT_rich Low_complexity Low_complexity 1 36 0 547 14 92 39 chr4 50201651 50201935 -152126412 + (TA)n Simple_repeat Simple_repeat 1 299 0 260 170 21 0 chr4 50201936 50201983 -152126364 - MER4-int LTR ERV1 -5444 1154 1107 2331 247 56 21 chr4 50202256 50203427 -152124920 + L1M3a LINE L1 795 1855 -4519 26 64 0 0 chr4 50203430 50203477 -152124870 + AT_rich Low_complexity Low_complexity 1 47 0 2699 13 0 0 chr4 50203525 50203824 -152124523 - AluYa5 SINE Alu -12 299 1 233 231 62 0 chr4 50203855 50203920 -152124427 + L1P5 LINE L1 5723 5791 -363 230 216 108 0 chr4 50203974 50204048 -152124299 - L1MC4 LINE L1 -1344 6698 6617 2436 164 62 4 chr4 50204049 50204549 -152123798 + L1MA9 LINE L1 5783 6311 -1 246 268 0 0 chr4 50205275 50205331 -152123016 + (TA)n Simple_repeat Simple_repeat 2 57 0 282 300 20 20 chr4 50205671 50205771 -152122576 + MIR SINE MIR 65 164 -98 535 280 25 18 chr4 50205771 50206050 -152122297 + L1MEc LINE L1 2026 2306 -4090 430 282 62 4 chr4 50206151 50206378 -152121969 + L1MEc LINE L1 2994 3233 -2982 480 173 25 38 chr4 50206455 50206587 -152121760 + L1ME1 LINE L1 5841 5967 -199 465 355 27 75 chr4 50207423 50207863 -152120484 - L2 LINE L2 0 3272 2854 350 350 97 19 chr4 50208040 50208297 -152120050 + L2 LINE L2 2610 2886 -428 1451 69 0 0 chr4 50208427 50208602 -152119745 - AluSg/x SINE Alu -9 303 129 636 112 10 0 chr4 50208766 50208864 -152119483 - AluSg SINE Alu -211 99 1 220 374 8 46 chr4 50208898 50209029 -152119318 + MIR SINE MIR 16 141 -67 441 224 131 0 chr4 50209142 50209249 -152119098 - L2 LINE L2 0 3313 3193 24 32 0 0 chr4 50209306 50209337 -152119010 + AT_rich Low_complexity Low_complexity 1 31 0 2246 106 3 3 chr4 50209562 50209863 -152118484 + AluSx SINE Alu 1 301 -11 689 168 56 35 chr4 50211195 50211338 -152117009 - MER45A DNA AcHobo -4 174 29 198 354 94 22 chr4 50211352 50211671 -152116676 + L2 LINE L2 1995 2336 -978 23 54 0 0 chr4 50211946 50211983 -152116364 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr4 50212375 50212403 -152115944 + AT_rich Low_complexity Low_complexity 1 28 0 2016 143 122 10 chr4 50213177 50213562 -152114785 - MSTA LTR MaLR 0 428 1 265 276 186 14 chr4 50214226 50214371 -152113976 + MIR SINE MIR 92 261 -1 265 341 0 24 chr4 50214438 50214520 -152113827 + L2 LINE L2 3225 3304 -9 222 189 0 38 chr4 50215154 50215207 -152113140 + (CATA)n Simple_repeat Simple_repeat 2 52 0 23 0 0 0 chr4 50215385 50215408 -152112939 + AT_rich Low_complexity Low_complexity 1 23 0 610 314 76 41 chr4 50215507 50215954 -152112393 + L1M4 LINE L1 4757 5222 -924 2281 101 3 3 chr4 50215954 50216261 -152112086 - AluSp SINE Alu 0 313 7 610 314 76 41 chr4 50216261 50216275 -152112072 + L1M4 LINE L1 5222 5234 -912 344 256 70 37 chr4 50216312 50216487 -152111860 + L1P4 LINE L1 5304 5485 -680 1072 177 10 84 chr4 50216536 50216835 -152111512 + L1 LINE L1 2347 2623 -3523 * 6973 156 37 20 chr4 50216832 50218018 -152110329 - L1M1 LINE L1 -6348 1217 12 1023 240 144 32 chr4 50218833 50219459 -152108888 - LTR50 LTR ERVL -2 793 6 237 268 0 0 chr4 50219700 50219756 -152108591 + (TA)n Simple_repeat Simple_repeat 1 56 0 207 0 0 0 chr4 50220027 50220050 -152108297 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1699 109 120 4 chr4 50220054 50220321 -152108026 - AluSp SINE Alu -15 298 1 418 272 136 0 chr4 50220387 50220534 -152107813 + MIR SINE MIR 84 250 -12 372 290 11 0 chr4 50221836 50221929 -152106418 - MER69 DNA AcHobo -2430 96 3 2296 60 3 3 chr4 50221986 50222270 -152106077 + AluY SINE Alu 1 284 -27 1233 13 13 6 chr4 50222270 50222426 -152105921 + (TAGA)n Simple_repeat Simple_repeat 4 160 0 209 119 24 0 chr4 50222597 50222639 -152105708 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 269 338 224 0 chr4 50222652 50222853 -152105494 - MIR SINE MIR -16 246 1 214 216 0 20 chr4 50223796 50223847 -152104500 + L2 LINE L2 3167 3216 -97 282 339 54 23 chr4 50224554 50224684 -152103663 + L2 LINE L2 3139 3272 0 3334 204 31 89 chr4 50225208 50225639 -152102708 + MLT1-int LTR MaLR 3 458 -913 1834 141 57 43 chr4 50225639 50226009 -152102338 - THE1C LTR MaLR 0 375 1 3334 204 31 89 chr4 50226009 50226557 -152101790 + MLT1-int LTR MaLR 458 925 -446 2428 296 59 7 chr4 50226559 50227334 -152101013 - L2 LINE L2 -1812 1502 687 23 54 0 0 chr4 50228608 50228645 -152099702 + AT_rich Low_complexity Low_complexity 1 37 0 2054 138 13 39 chr4 50228963 50229348 -152098999 + THE1C LTR MaLR 1 375 0 182 267 22 0 chr4 50229371 50229416 -152098931 - L2 LINE L2 -1 3271 3226 213 65 0 0 chr4 50231404 50231435 -152096912 + (CCCTAA)n Simple_repeat Simple_repeat 1 31 0 2273 111 16 35 chr4 50231440 50231809 -152096538 + THE1B LTR MaLR 1 362 -2 190 273 91 15 chr4 50233537 50233603 -152094744 - MIR SINE MIR -160 102 32 306 164 0 0 chr4 50233720 50233775 -152094572 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 2242 202 6 8 chr4 50234896 50235386 -152092961 + L1MB4 LINE L1 5686 6174 -6 500 129 0 0 chr4 50235403 50235488 -152092859 + L1MB8 LINE L1 6093 6177 -1 254 341 85 31 chr4 50236454 50236583 -152091764 + L2 LINE L2 3137 3272 0 444 308 85 81 chr4 50237546 50237793 -152090554 - L2 LINE L2 0 3272 3025 244 299 153 60 chr4 50238297 50238659 -152089688 + L2 LINE L2 2842 3252 -61 2226 125 0 0 chr4 50238659 50238970 -152089377 - AluSq SINE Alu -2 311 1 244 299 153 60 chr4 50238970 50239039 -152089308 + L2 LINE L2 3252 3313 0 2032 100 6 42 chr4 50239099 50239410 -152088937 - AluSg1 SINE Alu -9 300 1 22 35 0 0 chr4 50240358 50240387 -152087960 + AT_rich Low_complexity Low_complexity 1 29 0 2246 101 10 3 chr4 50240713 50241020 -152087327 - AluSc SINE Alu 0 309 1 1531 90 14 5 chr4 50241052 50241274 -152087073 + L1PA13 LINE L1 5939 6162 -1 2040 161 28 102 chr4 50242972 50243514 -152084833 + MLT1D LTR MaLR 4 505 0 1339 277 43 32 chr4 50243518 50244201 -152084146 + L2 LINE L2 2634 3313 0 354 23 0 0 chr4 50244645 50244688 -152083659 + (CA)n Simple_repeat Simple_repeat 2 44 0 270 386 17 59 chr4 50245331 50245567 -152082780 - L3 LINE CR1 -79 1498 1273 25 0 0 0 chr4 50247181 50247206 -152081141 + AT_rich Low_complexity Low_complexity 1 25 0 296 296 0 72 chr4 50247614 50247739 -152080608 + L2 LINE L2 3157 3272 0 281 330 185 18 chr4 50249014 50249241 -152079106 - L2 LINE L2 -201 3071 2807 202 368 144 14 chr4 50249302 50249579 -152078768 - L2 LINE L2 -638 2676 2364 24 32 0 0 chr4 50249677 50249708 -152078639 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr4 50250188 50250218 -152078129 + AT_rich Low_complexity Low_complexity 1 30 0 926 280 48 36 chr4 50250428 50251004 -152077343 - L1MCc LINE L1 -4546 2576 1792 225 0 0 0 chr4 50251004 50251029 -152077318 + (TC)n Simple_repeat Simple_repeat 2 26 0 926 280 48 36 chr4 50251029 50251215 -152077132 - L1MCc LINE L1 -5330 1792 1610 1502 273 62 53 chr4 50251331 50252180 -152076167 - L1MCc LINE L1 -4892 1531 816 724 270 124 48 chr4 50252384 50252821 -152075526 - L1MCc LINE L1 -5918 505 36 328 293 20 0 chr4 50252833 50252932 -152075415 - MIR SINE MIR -71 191 91 220 294 0 0 chr4 50253977 50254028 -152074319 - L3 LINE CR1 -71 1506 1456 211 309 0 0 chr4 50254032 50254087 -152074260 - L3 LINE CR1 -410 1167 1113 711 209 39 55 chr4 50254194 50254376 -152073971 + MIR SINE MIR 58 236 -26 206 317 128 18 chr4 50255760 50255924 -152072423 - L2 LINE L2 -546 2768 2587 212 314 0 0 chr4 50255957 50256008 -152072339 + MIR3 SINE MIR 143 193 -15 255 331 24 24 chr4 50256270 50256436 -152071911 - L2 LINE L2 -933 2381 2216 208 239 22 0 chr4 50256752 50256798 -152071549 - L2 LINE L2 -405 2908 2862 291 149 0 0 chr4 50257521 50257568 -152070779 - L2 LINE L2 -4 3309 3263 203 164 16 0 chr4 50258057 50258118 -152070229 + (TA)n Simple_repeat Simple_repeat 2 63 0 1747 159 7 4 chr4 50258255 50258532 -152069815 + AluJb SINE Alu 1 278 -34 1240 273 89 23 chr4 50258743 50258892 -152069455 - LTR33 LTR ERVL -14 507 369 1943 195 94 13 chr4 50258892 50259359 -152068988 - MLT1D LTR MaLR 0 505 1 1240 273 89 23 chr4 50259359 50259682 -152068665 - LTR33 LTR ERVL -152 369 4 1815 148 10 16 chr4 50259687 50259992 -152068355 + AluSx SINE Alu 1 303 -9 180 0 0 0 chr4 50260214 50260234 -152068113 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 318 320 121 43 chr4 50260291 50260613 -152067734 + L2 LINE L2 2944 3290 -23 414 167 8 17 chr4 50260714 50260834 -152067513 + CT-rich Low_complexity Low_complexity 1 119 0 519 285 7 15 chr4 50262111 50262248 -152066099 + MLT1J LTR MaLR 1 136 -375 267 229 29 14 chr4 50262265 50262335 -152066012 + Tigger5 DNA MER2_type 2251 2321 -2 299 315 20 14 chr4 50262335 50262481 -152065866 + MLT1J LTR MaLR 133 279 -232 304 279 54 23 chr4 50262549 50262678 -152065669 - L1 LINE L1 -1727 4419 4287 21 57 0 0 chr4 50262945 50262980 -152065367 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr4 50263813 50263850 -152064497 + AT_rich Low_complexity Low_complexity 1 37 0 524 316 92 40 chr4 50264061 50264387 -152063960 + L1ME3A LINE L1 5549 5891 -275 5782 146 16 3 chr4 50264990 50265960 -152062387 - L1MA4 LINE L1 -1 6299 5317 239 362 85 34 chr4 50266275 50266452 -152061895 + MIR SINE MIR 21 206 -56 421 301 108 33 chr4 50267676 50268008 -152060339 + L2 LINE L2 2137 2493 -821 201 333 41 97 chr4 50268455 50268722 -152059625 + L2 LINE L2 3016 3267 -5 534 232 0 0 chr4 50268882 50268981 -152059366 + MER82 DNA MER2_type 5 103 -550 2831 209 5 9 chr4 50269052 50269603 -152058744 + MER82 DNA MER2_type 105 653 0 523 248 121 30 chr4 50269633 50270090 -152058257 + MLT1H1 LTR MaLR 21 549 0 522 251 15 96 chr4 50271375 50271574 -152056773 + MER92C LTR ERV1 1 183 -371 26 0 0 0 chr4 50271586 50271612 -152056735 + AT_rich Low_complexity Low_complexity 1 26 0 1877 206 41 18 chr4 50271612 50272050 -152056297 - MER31B LTR ERV1 -18 448 1 288 256 93 0 chr4 50272084 50272170 -152056177 + MER92C LTR ERV1 459 552 -2 2230 109 0 0 chr4 50272187 50272480 -152055867 - AluSp SINE Alu -12 301 9 661 292 72 59 chr4 50273331 50273718 -152054629 - L2 LINE L2 0 3313 2922 745 302 57 16 chr4 50274698 50274943 -152053404 - LTR16A LTR ERVL -10 440 186 1833 184 17 47 chr4 50274979 50275381 -152052966 - MLT1B LTR MaLR 0 390 1 1374 214 61 13 chr4 50275382 50275695 -152052652 - MLT1B-int LTR MaLR -1 1370 1043 317 339 39 51 chr4 50275695 50275949 -152052398 - ERVL LTR ERVL -2722 3042 2792 383 255 102 0 chr4 50275959 50276057 -152052290 - LTR16A LTR ERVL -107 343 236 213 224 17 17 chr4 50276257 50276315 -152052032 - L2 LINE L2 -11 3261 3204 213 290 318 0 chr4 50276319 50276426 -152051921 - MIR SINE MIR -114 148 8 856 223 129 107 chr4 50276798 50277286 -152051061 + MLT1D LTR MaLR 1 499 -6 272 268 0 0 chr4 50278630 50278686 -152049661 + MIR3 SINE MIR 99 154 -54 187 361 141 35 chr4 50279534 50280170 -152048177 + L2 LINE L2 1882 2618 -696 2034 132 0 3 chr4 50280170 50280465 -152047882 - AluSx SINE Alu -14 298 5 187 361 141 35 chr4 50280465 50280609 -152047738 + L2 LINE L2 2618 2745 -569 1009 102 0 0 chr4 50281499 50281626 -152046721 + AluSg SINE Alu 1 127 -183 187 331 169 0 chr4 50281752 50281888 -152046459 + L2 LINE L2 2896 3054 -218 453 274 0 10 chr4 50282078 50282180 -152046167 + L2 LINE L2 3200 3300 -13 2129 103 14 0 chr4 50282493 50282785 -152045562 - AluSx SINE Alu -16 296 1 446 148 0 12 chr4 50282831 50282912 -152045435 - MADE1 DNA Mariner 0 80 1 576 40 0 0 chr4 50283704 50283779 -152044568 + (GTTTG)n Simple_repeat Simple_repeat 1 75 0 613 328 50 47 chr4 50284188 50284529 -152043818 + L2 LINE L2 2935 3276 -37 1781 217 75 2 chr4 50284839 50285263 -152043084 - L1MC4 LINE L1 -364 7678 7224 1366 192 62 4 chr4 50286162 50286285 -152042062 + AluJo SINE Alu 1 115 -197 180 0 0 0 chr4 50286285 50286305 -152042042 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1366 192 62 4 chr4 50286305 50286457 -152041890 + AluJo SINE Alu 115 292 -20 380 367 49 8 chr4 50286876 50287143 -152041204 + L2 LINE L2 2502 2779 -535 224 338 14 14 chr4 50287229 50287303 -152041044 + L2 LINE L2 2952 3025 -247 1625 188 0 3 chr4 50287319 50287601 -152040746 - AluJo SINE Alu -13 299 19 24 0 0 0 chr4 50287840 50287864 -152040483 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 50288157 50288178 -152040169 + AT_rich Low_complexity Low_complexity 1 21 0 791 286 43 86 chr4 50289743 50290256 -152038091 + MLT1K LTR MaLR 98 588 0 212 329 58 51 chr4 50290824 50290961 -152037386 - MER5A DNA MER1_type -7 182 45 522 232 218 0 chr4 50291063 50291205 -152037142 - MER5A DNA MER1_type -5 184 12 441 0 0 0 chr4 50291421 50291470 -152036877 + (CA)n Simple_repeat Simple_repeat 2 50 0 322 272 144 39 chr4 50293280 50293460 -152034887 - L2 LINE L2 -8 3305 3107 447 333 83 48 chr4 50293713 50294133 -152034214 - L2 LINE L2 -431 2883 2449 196 329 13 0 chr4 50295133 50295212 -152033135 + L2 LINE L2 2886 2965 -349 * 366 326 62 0 chr4 50295194 50295323 -152033024 + L2 LINE L2 3177 3313 0 563 223 31 15 chr4 50295566 50295696 -152032651 - MLT1C LTR MaLR -5 462 331 371 338 42 25 chr4 50295850 50296062 -152032285 - MIR SINE MIR -2 260 1 186 263 0 0 chr4 50297606 50297663 -152030684 + CT-rich Low_complexity Low_complexity 2 58 0 26 30 0 0 chr4 50298387 50298420 -152029927 + AT_rich Low_complexity Low_complexity 1 33 0 276 320 115 8 chr4 50298765 50298887 -152029460 - L2 LINE L2 0 3313 3179 474 331 170 36 chr4 50299073 50299631 -152028716 - L2 LINE L2 -337 2977 2345 252 353 89 22 chr4 50300309 50300533 -152027814 + MIR SINE MIR 5 243 -19 261 359 63 19 chr4 50300697 50300856 -152027491 - MIR SINE MIR -57 205 40 443 18 18 0 chr4 50301497 50301553 -152026794 + (CA)n Simple_repeat Simple_repeat 2 58 0 546 57 0 0 chr4 50301640 50301710 -152026637 + (CA)n Simple_repeat Simple_repeat 1 70 0 367 337 27 4 chr4 50301717 50301945 -152026402 + L1MC4a LINE L1 5679 5810 -360 22 0 0 0 chr4 50303292 50303314 -152025033 + AT_rich Low_complexity Low_complexity 1 22 0 190 320 169 67 chr4 50303620 50303798 -152024549 - L2 LINE L2 0 3272 3077 332 246 36 65 chr4 50304313 50304451 -152023896 - LTR33A LTR ERVL -15 508 375 285 326 70 39 chr4 50304458 50304587 -152023760 + L2 LINE L2 3140 3272 0 181 258 0 140 chr4 50305789 50305882 -152022465 + MIR3 SINE MIR 98 177 -31 270 0 0 0 chr4 50307246 50307276 -152021071 + (TA)n Simple_repeat Simple_repeat 2 31 0 2114 160 30 5 chr4 50307279 50307672 -152020675 - L1M1 LINE L1 -518 5782 5380 971 205 5 19 chr4 50307675 50307880 -152020467 - MER20 DNA MER1_type 0 219 18 2015 129 7 3 chr4 50308019 50308313 -152020034 + AluSx SINE Alu 4 298 -14 805 118 99 6 chr4 50309600 50309761 -152018586 - L1MA8 LINE L1 -4 6287 6112 225 311 108 54 chr4 50310238 50310324 -152018023 - MIR SINE MIR -46 216 136 1376 207 13 22 chr4 50310324 50310638 -152017709 + AluJo SINE Alu 1 311 -1 225 311 108 54 chr4 50310638 50310718 -152017629 - MIR SINE MIR -126 136 41 1491 212 0 21 chr4 50312083 50312422 -152015925 - AluJb SINE Alu 0 333 1 536 308 47 12 chr4 50313899 50314071 -152014276 - MIR3 SINE MIR -29 179 2 247 415 8 8 chr4 50314385 50314508 -152013839 + MIR SINE MIR 16 138 -70 185 250 15 73 chr4 50314727 50314795 -152013552 - L2 LINE L2 -6 3266 3203 1051 197 24 0 chr4 50314826 50315034 -152013313 + L1PA16 LINE L1 5952 6164 -2 343 313 148 0 chr4 50315059 50315187 -152013160 + MIR3 SINE MIR 30 176 -32 1819 156 34 42 chr4 50315189 50315567 -152012780 - THE1C LTR MaLR 0 375 1 319 188 14 14 chr4 50317538 50317607 -152010740 + Tigger2 DNA MER2_type 1 69 -2649 * 2267 169 25 34 chr4 50317597 50318041 -152010306 + Tigger2 DNA MER2_type 2273 2712 -6 399 152 0 13 chr4 50318040 50318119 -152010228 + MER53 DNA DNA 112 189 0 * 1223 223 66 31 chr4 50318911 50319292 -152009055 + MSTD LTR MaLR 1 394 -2 269 351 9 0 chr4 50319486 50319600 -152008747 - MIR SINE MIR -17 245 131 238 267 15 74 chr4 50319655 50319790 -152008557 - L1MC5 LINE L1 -383 7578 7452 262 189 33 122 chr4 50319857 50319947 -152008400 - L1MC5 LINE L1 -630 7331 7250 1937 184 2 85 chr4 50320048 50320473 -152007874 - MLT1B LTR MaLR 0 390 1 764 251 68 4 chr4 50320473 50320708 -152007639 - L1MC5 LINE L1 -739 7222 6973 2276 91 3 3 chr4 50320834 50321131 -152007216 - AluSq SINE Alu -16 297 1 468 51 0 0 chr4 50321710 50321769 -152006578 + (CA)n Simple_repeat Simple_repeat 2 60 0 274 211 0 28 chr4 50322601 50322672 -152005675 + A-rich Low_complexity Low_complexity 2 70 0 23 0 0 0 chr4 50323019 50323042 -152005305 + AT_rich Low_complexity Low_complexity 1 23 0 1959 129 0 0 chr4 50323961 50324241 -152004106 - AluSx SINE Alu -2 310 31 1234 191 43 39 chr4 50325412 50325694 -152002653 - AluJo SINE Alu -29 283 1 412 280 0 0 chr4 50325964 50326071 -152002276 + Tigger5 DNA MER2_type 2217 2323 0 1040 100 11 11 chr4 50326173 50326219 -152002128 + (TTCC)n Simple_repeat Simple_repeat 1 226 0 1040 100 11 11 chr4 50326219 50326399 -152001948 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 662 207 7 14 chr4 50326517 50326686 -152001661 - FLAM_C SINE Alu 0 168 1 973 283 123 20 chr4 50327697 50328103 -152000244 - L2 LINE L2 -802 2512 2065 518 305 57 17 chr4 50328190 50328367 -151999980 - MIR SINE MIR -72 190 7 335 309 60 34 chr4 50328390 50328539 -151999808 + L3 LINE CR1 1052 1204 -373 334 281 72 48 chr4 50328671 50328838 -151999509 + L3 LINE CR1 1194 1364 -213 292 380 41 0 chr4 50329001 50329122 -151999225 + MIR SINE MIR 61 186 -76 214 191 0 0 chr4 50329146 50329188 -151999159 + T-rich Low_complexity Low_complexity 1 42 0 445 283 99 54 chr4 50329349 50329572 -151998775 + MIR SINE MIR 18 250 -12 2690 62 88 0 chr4 50330299 50330673 -151997674 - L1PA7 LINE L1 -3 6151 5745 1571 36 0 5 chr4 50330673 50330866 -151997481 + L1PA7 LINE L1 5556 5747 -407 558 175 0 0 chr4 50331285 50331382 -151996965 + FLAM_A SINE Alu 33 129 -13 371 307 37 54 chr4 50332259 50332698 -151995649 - L1MEd LINE L1 -1063 1427 897 711 314 52 0 chr4 50332797 50333045 -151995302 + MIR SINE MIR 2 262 0 24 0 0 0 chr4 50333707 50333731 -151994616 + AT_rich Low_complexity Low_complexity 1 24 0 324 0 0 0 chr4 50334674 50334710 -151993637 + (TA)n Simple_repeat Simple_repeat 2 37 0 445 264 186 6 chr4 50337127 50337294 -151991053 + MIR SINE MIR 54 250 -12 616 284 42 34 chr4 50338380 50338619 -151989728 - MIR SINE MIR -14 248 8 191 302 35 47 chr4 50338855 50338941 -151989406 + L2 LINE L2 2532 2616 -698 830 293 159 25 chr4 50339154 50339679 -151988668 + L2 LINE L2 2709 3313 0 306 307 54 36 chr4 50339792 50339958 -151988389 + MARNA DNA Mariner 182 350 -236 301 346 114 34 chr4 50340419 50340682 -151987665 - L2 LINE L2 -2 3270 2987 249 330 85 8 chr4 50340878 50340996 -151987351 + L2 LINE L2 3142 3268 -4 261 259 62 12 chr4 50341791 50341872 -151986475 - MIR SINE MIR -150 112 28 330 211 267 0 chr4 50341875 50341965 -151986382 - MER5A DNA MER1_type -3 186 73 348 349 101 6 chr4 50342373 50342542 -151985805 + L2 LINE L2 2888 3072 -241 261 0 0 0 chr4 50343230 50343259 -151985088 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 22 70 0 0 chr4 50343716 50343759 -151984588 + AT_rich Low_complexity Low_complexity 1 43 0 270 294 50 59 chr4 50344357 50344476 -151983871 - L2 LINE L2 0 3272 3155 2047 120 7 0 chr4 50344790 50345089 -151983258 + AluSg SINE Alu 3 303 -7 194 355 0 11 chr4 50345090 50345183 -151983164 - MIR3 SINE MIR -6 202 111 32 26 0 0 chr4 50345282 50345321 -151983026 + AT_rich Low_complexity Low_complexity 1 39 0 620 294 48 17 chr4 50345438 50345669 -151982678 - L3 LINE CR1 -350 1227 990 24 32 0 0 chr4 50345669 50345700 -151982647 + AT_rich Low_complexity Low_complexity 1 31 0 255 375 0 0 chr4 50345766 50345854 -151982493 - L2 LINE L2 -44 3269 3182 242 323 94 10 chr4 50346033 50346129 -151982218 - MIR SINE MIR -111 151 48 261 343 38 9 chr4 50346219 50346324 -151982023 - L3 LINE CR1 -1200 377 270 23 86 0 0 chr4 50346565 50346623 -151981724 + AT_rich Low_complexity Low_complexity 1 58 0 212 403 40 8 chr4 50346805 50346929 -151981418 - L2 LINE L2 -16 3256 3129 26 93 0 0 chr4 50347444 50347519 -151980828 + AT_rich Low_complexity Low_complexity 1 75 0 209 211 19 0 chr4 50348536 50348588 -151979759 + T-rich Low_complexity Low_complexity 4 56 0 675 220 71 49 chr4 50348591 50348966 -151979381 - L1ME3 LINE L1 -1 6161 5665 379 333 20 7 chr4 50350195 50350348 -151977999 + MIR SINE MIR 92 246 -16 15776 49 3 1 chr4 50351406 50354170 -151974177 - L1PA5 LINE L1 -1 6153 3384 4279 53 0 2 chr4 50354170 50354735 -151973612 + L1PA5 LINE L1 2796 3359 -2787 219 323 32 91 chr4 50355095 50355281 -151973066 + L3 LINE CR1 926 1100 -477 222 118 0 0 chr4 50355327 50355361 -151972986 + (T)n Simple_repeat Simple_repeat 1 34 0 2271 138 3 5 chr4 50355436 50355807 -151972540 - L1PB1 LINE L1 0 6151 5782 228 267 0 0 chr4 50355810 50355900 -151972447 - L1MC4 LINE L1 -1339 6703 6614 10306 181 70 18 chr4 50355907 50361990 -151966357 - L1P5 LINE L1 -360 6507 80 2208 119 0 32 chr4 50362027 50362339 -151966008 - AluSx SINE Alu -10 302 1 942 229 40 20 chr4 50362451 50362704 -151965643 - MIR SINE MIR 0 262 5 2192 85 29 23 chr4 50363884 50364191 -151964156 - AluY SINE Alu -2 309 1 29 47 0 0 chr4 50364343 50364386 -151963961 + AT_rich Low_complexity Low_complexity 1 43 0 381 302 108 31 chr4 50364613 50364742 -151963605 + MIR SINE MIR 6 144 -118 826 262 5 16 chr4 50365166 50365357 -151962990 - MER5A DNA MER1_type 0 189 1 248 350 73 34 chr4 50365538 50365715 -151962632 - L2 LINE L2 -610 2704 2521 444 274 26 39 chr4 50365962 50366015 -151962332 - MIR SINE MIR -17 245 193 2152 136 125 8 chr4 50366015 50366398 -151961949 - MSTA LTR MaLR 0 428 1 444 274 26 39 chr4 50366398 50366497 -151961850 - MIR SINE MIR -69 193 95 290 253 13 0 chr4 50366506 50366585 -151961762 + LTR33 LTR ERVL 10 89 -432 431 286 27 58 chr4 50366747 50366971 -151961376 + LTR33 LTR ERVL 305 521 0 22 0 0 0 chr4 50368856 50368878 -151959469 + AT_rich Low_complexity Low_complexity 1 22 0 367 290 54 48 chr4 50369065 50369251 -151959096 - MIR SINE MIR -65 197 11 6405 41 1 1 chr4 50369408 50370238 -151958109 - L1P LINE L1 -3556 2590 1761 14199 32 1 0 chr4 50370238 50372747 -151955600 + L1PA4 LINE L1 3657 6174 0 369 294 43 108 chr4 50373068 50373299 -151955048 + HAL1 LINE L1 1 216 -2291 1393 201 45 28 chr4 50373401 50373690 -151954657 + AluJb SINE Alu 15 308 -4 470 314 60 60 chr4 50373695 50374013 -151954334 + HAL1 LINE L1 308 625 -1882 925 198 32 53 chr4 50374165 50374448 -151953899 - L1ME1 LINE L1 -2 6164 5888 4251 156 35 11 chr4 50374547 50376019 -151952328 - L1PB4 LINE L1 -8 6148 4581 1738 248 4 4 chr4 50376028 50376488 -151951859 - L1PB4 LINE L1 -3224 2922 2463 359 202 0 0 chr4 50376489 50376573 -151951774 + L1PB4 LINE L1 2368 2451 -3695 824 289 75 39 chr4 50376581 50377035 -151951312 + HAL1 LINE L1 805 1241 -1266 2246 128 0 0 chr4 50377035 50377348 -151950999 + AluSq SINE Alu 1 313 0 824 289 75 39 chr4 50377348 50377789 -151950558 + HAL1 LINE L1 1241 1732 -775 258 208 168 46 chr4 50377857 50378030 -151950317 + HAL1 LINE L1 2314 2507 0 229 259 24 12 chr4 50379122 50379207 -151949140 + T-rich Low_complexity Low_complexity 3 88 0 321 257 250 0 chr4 50379224 50379360 -151948987 - MIR SINE MIR -16 246 77 369 0 0 0 chr4 50379458 50379499 -151948848 + (CA)n Simple_repeat Simple_repeat 2 42 0 244 286 71 32 chr4 50380619 50380745 -151947602 - L1ME4a LINE L1 -22 6099 5969 1723 245 52 35 chr4 50381226 50381789 -151946558 + MER97a DNA MER1_type? 1 572 -322 289 252 0 35 chr4 50382065 50382180 -151946167 + MER97b DNA MER1_type? 943 1053 0 399 264 9 0 chr4 50382244 50382373 -151945974 - L1ME4a LINE L1 -315 5806 5675 333 225 112 34 chr4 50383043 50383132 -151945215 + MIR SINE MIR 1 96 -166 200 271 21 73 chr4 50383134 50383230 -151945117 - L2 LINE L2 -41 3272 3182 348 24 0 0 chr4 50383384 50383425 -151944922 + (CA)n Simple_repeat Simple_repeat 2 42 0 266 232 30 40 chr4 50383460 50383559 -151944788 + (CATA)n Simple_repeat Simple_repeat 3 100 0 389 313 40 7 chr4 50383700 50383850 -151944497 + MIR SINE MIR 102 256 -6 507 284 16 33 chr4 50384871 50385054 -151943293 + MIR SINE MIR 12 191 -71 296 316 75 61 chr4 50386049 50386234 -151942113 - MIR SINE MIR -32 230 40 870 209 17 78 chr4 50386234 50386464 -151941883 - MER20 DNA MER1_type 0 219 4 296 316 75 61 chr4 50386464 50386490 -151941857 - MIR SINE MIR -222 40 16 521 204 43 56 chr4 50386517 50386679 -151941668 + Charlie4a DNA MER1_type 24 183 -325 3436 81 24 2 chr4 50386682 50387176 -151941171 + L1MA1 LINE L1 5792 6296 -6 32 0 0 0 chr4 50387176 50387208 -151941139 + AT_rich Low_complexity Low_complexity 1 32 0 693 218 76 13 chr4 50387248 50387527 -151940820 + Charlie4a DNA MER1_type 196 492 -16 293 286 160 0 chr4 50387664 50387783 -151940564 + MIR SINE MIR 125 262 0 552 30 0 0 chr4 50388607 50388673 -151939674 + (TGGA)n Simple_repeat Simple_repeat 4 69 0 707 209 98 13 chr4 50388800 50389034 -151939313 - MER112 DNA MER1_type -1 255 2 876 217 22 43 chr4 50389079 50389402 -151938945 - L1 LINE L1 -3645 3920 3605 1227 234 90 70 chr4 50389403 50390000 -151938347 - L1 LINE L1 -3891 3674 3090 192 40 0 0 chr4 50390000 50390025 -151938322 + (TA)n Simple_repeat Simple_repeat 1 25 0 1227 234 90 70 chr4 50390025 50390164 -151938183 - L1 LINE L1 -4475 3090 2955 1474 207 10 32 chr4 50390164 50390478 -151937869 - AluJo SINE Alu -5 307 1 1227 234 90 70 chr4 50390478 50390607 -151937740 - L1 LINE L1 -4610 2955 2791 * 4480 176 23 15 chr4 50390585 50391705 -151936642 + L1MA7 LINE L1 5158 6287 -4 490 228 0 0 chr4 50392252 50392375 -151935972 - LTR37A LTR ERV1 -21 405 283 204 307 257 5 chr4 50392376 50392578 -151935769 - L2 LINE L2 -1359 1955 1703 198 0 0 0 chr4 50392882 50392904 -151935443 + (T)n Simple_repeat Simple_repeat 1 22 0 2112 355 17 18 chr4 50393007 50394121 -151934226 + ERVL LTR ERVL 2463 3575 -2189 631 235 117 6 chr4 50394484 50394646 -151933701 - MER5A DNA MER1_type -2 187 8 282 254 63 0 chr4 50395220 50395283 -151933064 + L2 LINE L2 3203 3269 -3 7598 76 1 2 chr4 50395394 50396452 -151931895 + L1P LINE L1 3620 4676 -1470 902 162 35 15 chr4 50397468 50397665 -151930682 + MLT1A1 LTR MaLR 1 201 -164 21 0 0 0 chr4 50398193 50398214 -151930133 + AT_rich Low_complexity Low_complexity 1 21 0 332 323 116 8 chr4 50398227 50398378 -151929969 + MIR SINE MIR 16 185 -62 * 460 275 53 48 chr4 50398372 50398410 -151929937 - L3 LINE CR1 -364 1213 1177 2407 93 3 0 chr4 50398410 50398720 -151929627 - AluSp SINE Alu -2 311 1 460 275 53 48 chr4 50398720 50398870 -151929477 - L3 LINE CR1 -400 1177 1024 762 87 0 0 chr4 50398991 50399094 -151929253 - AluSq/x SINE Alu -208 105 3 210 326 151 23 chr4 50399298 50399470 -151928877 - L2 LINE L2 -4 3268 3075 991 240 53 0 chr4 50400402 50400759 -151927588 + L1ME1 LINE L1 5723 6166 0 2278 110 3 3 chr4 50400764 50401074 -151927273 + AluSg SINE Alu 1 310 0 241 172 188 16 chr4 50401232 50401296 -151927051 + MLT1J1 LTR MaLR 76 150 -296 1195 148 5 0 chr4 50401579 50401782 -151926565 - L1MB7 LINE L1 -251 5933 5730 396 208 79 67 chr4 50402799 50402977 -151925370 + MLT1K LTR MaLR 387 566 -22 321 252 183 9 chr4 50402997 50403112 -151925235 + L3 LINE CR1 1374 1508 -69 457 230 260 15 chr4 50403128 50403324 -151925023 - MIR SINE MIR -1 261 18 256 229 43 0 chr4 50403616 50403686 -151924661 - Charlie4 DNA MER1_type -1 1960 1888 406 260 29 0 chr4 50404407 50404511 -151923836 + MIR SINE MIR 48 154 -108 7876 109 25 4 chr4 50404519 50405763 -151922584 - Tigger1 DNA MER2_type 0 2418 1149 1617 140 41 3 chr4 50405863 50406155 -151922192 + L1M4 LINE L1 5484 5786 -398 450 245 0 0 chr4 50406155 50406249 -151922098 + MER21B LTR ERV1 1 94 -769 573 179 26 43 chr4 50406318 50406435 -151921912 - FLAM_A SINE Alu -27 115 1 2269 113 3 0 chr4 50406440 50406742 -151921605 - AluSx SINE Alu -7 305 3 1186 30 0 7 chr4 50406753 50406888 -151921459 - AluYb8 SINE Alu -164 154 21 249 215 49 153 chr4 50406940 50407103 -151921244 - MER5A DNA MER1_type -43 146 1 272 219 31 0 chr4 50407211 50407275 -151921072 + MIR SINE MIR 82 147 -115 779 266 162 29 chr4 50407453 50407897 -151920450 + MLT1J LTR MaLR 1 503 -8 312 282 109 16 chr4 50408018 50408176 -151920171 + MIR SINE MIR 17 190 -65 235 298 38 61 chr4 50408270 50408401 -151919946 - MER5A DNA MER1_type -26 163 36 782 296 22 15 chr4 50408692 50408966 -151919381 + L1MEc LINE L1 81 356 -6040 466 256 8 38 chr4 50409195 50409338 -151919009 - MIR3 SINE MIR -37 171 32 303 104 0 0 chr4 50409756 50409804 -151918543 + (ATG)n Simple_repeat Simple_repeat 1 48 0 454 264 56 0 chr4 50409833 50409958 -151918389 - MIR SINE MIR -51 211 80 469 216 162 20 chr4 50410002 50410150 -151918197 + MER5A DNA MER1_type 13 181 -8 361 279 158 12 chr4 50412374 50412539 -151915808 - MIR SINE MIR -73 189 1 247 316 0 41 chr4 50412547 50412645 -151915702 - MIR SINE MIR -92 170 77 205 225 50 0 chr4 50413084 50413124 -151915223 + MIR SINE MIR 84 125 -137 1068 217 45 39 chr4 50413416 50413725 -151914622 + MLT1A1 LTR MaLR 1 311 -54 2449 104 0 0 chr4 50413887 50414196 -151914151 + AluSq SINE Alu 1 309 -4 2295 117 0 0 chr4 50414819 50415118 -151913229 + AluSx SINE Alu 1 299 -13 202 276 0 17 chr4 50415757 50415815 -151912532 + GA-rich Low_complexity Low_complexity 4 60 0 249 323 32 70 chr4 50416136 50416294 -151912053 - L3b LINE CR1 -202 1381 1230 1981 111 0 0 chr4 50417528 50417781 -151910566 - AluSx SINE Alu -22 290 38 360 399 68 6 chr4 50418113 50418451 -151909896 + L2 LINE L2 1348 1706 -1608 231 36 0 0 chr4 50418463 50418491 -151909856 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 281 102 41 0 chr4 50419113 50419162 -151909185 - L2 LINE L2 -218 3054 3004 335 308 87 46 chr4 50421948 50422143 -151906204 - MIR SINE MIR -49 213 11 315 223 145 84 chr4 50423071 50423237 -151905110 - L1ME3A LINE L1 -155 6015 5840 183 42 0 0 chr4 50423262 50423286 -151905061 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 332 234 75 0 chr4 50423287 50423378 -151904969 - L1ME3A LINE L1 -408 5754 5658 1708 245 77 102 chr4 50423423 50424527 -151903820 + L2 LINE L2 2223 3306 -7 706 187 138 10 chr4 50424582 50424785 -151903562 + L1MEc LINE L1 1633 1861 -4535 1058 161 28 50 chr4 50424803 50425120 -151903227 + L1MEc LINE L1 2131 2440 -3956 1061 197 35 20 chr4 50425121 50425166 -151903181 + AluJo SINE Alu 1 44 -268 1779 69 0 0 chr4 50425166 50425383 -151902964 + AluY SINE Alu 87 303 -8 1061 197 35 20 chr4 50425383 50425535 -151902812 + AluJo SINE Alu 44 201 -111 335 242 210 8 chr4 50426806 50426930 -151901417 + MIR SINE MIR 108 256 -6 230 296 28 0 chr4 50427304 50427375 -151900972 - MIR SINE MIR -55 153 81 12362 86 9 7 chr4 50428299 50430014 -151898333 - L1P3 LINE L1 -4734 1727 10 901 113 0 0 chr4 50430025 50430181 -151898166 - AluSx SINE Alu 0 324 169 783 120 9 0 chr4 50430184 50430292 -151898055 - AluSx SINE Alu -202 110 2 1017 273 77 18 chr4 50430294 50430715 -151897632 + L2 LINE L2 2069 2557 -757 487 285 261 13 chr4 50430824 50431203 -151897144 + L2 LINE L2 2836 3308 -5 991 281 159 16 chr4 50432065 50432517 -151895830 - LTR33 LTR ERVL -2 519 3 1714 320 82 25 chr4 50432768 50433634 -151894713 + L2 LINE L2 2127 3062 -251 208 233 0 23 chr4 50433746 50433789 -151894558 + L2 LINE L2 3209 3250 -22 2190 111 13 0 chr4 50433916 50434214 -151894133 + AluSq SINE Alu 1 302 -11 216 0 0 0 chr4 50434465 50434489 -151893858 + (TTG)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr4 50435817 50435839 -151892508 + AT_rich Low_complexity Low_complexity 1 22 0 1755 190 0 26 chr4 50435847 50436158 -151892189 + AluSx SINE Alu 1 303 -9 657 145 7 138 chr4 50436158 50436310 -151892037 + AluJo/FRAM SINE Alu 137 268 -44 355 144 130 62 chr4 50437074 50437220 -151891127 - L1ME4a LINE L1 -20 6101 5946 31 0 0 0 chr4 50439387 50439418 -151888929 + AT_rich Low_complexity Low_complexity 1 31 0 2364 102 0 13 chr4 50440627 50440941 -151887406 + AluSx SINE Alu 1 310 -2 1981 179 0 0 chr4 50440951 50441288 -151887059 + AluJb SINE Alu 1 312 0 964 187 183 56 chr4 50443522 50443790 -151884557 - AluJo SINE Alu 0 302 1 199 244 0 0 chr4 50445075 50445120 -151883227 + MIR SINE MIR 108 152 -110 450 0 0 0 chr4 50445201 50445251 -151883096 + (TG)n Simple_repeat Simple_repeat 2 51 0 31 0 0 0 chr4 50445251 50445282 -151883065 + AT_rich Low_complexity Low_complexity 1 31 0 2261 103 0 10 chr4 50445288 50445589 -151882758 - AluSq SINE Alu -15 298 1 431 246 66 4 chr4 50445635 50445762 -151882585 - MIR SINE MIR -31 177 45 310 227 11 57 chr4 50445810 50445898 -151882449 + MIR SINE MIR 33 116 -92 690 279 49 11 chr4 50446621 50446908 -151881439 + LTR16C LTR ERVL 192 489 -2 502 213 102 82 chr4 50446909 50447153 -151881194 + MER102b DNA MER1_type 92 340 -1 526 309 85 38 chr4 50447153 50447389 -151880958 + MIR SINE MIR 1 247 -15 200 214 24 0 chr4 50449996 50450038 -151878309 + L2 LINE L2 3262 3304 -9 235 316 105 0 chr4 50450848 50450943 -151877404 - L2 LINE L2 -50 3222 3118 279 265 71 20 chr4 50451368 50451466 -151876881 - L2 LINE L2 -782 2532 2430 2283 110 3 3 chr4 50451939 50452249 -151876098 + AluSg SINE Alu 1 310 0 2365 115 0 3 chr4 50453027 50453339 -151875008 - AluSx SINE Alu -1 311 1 207 0 0 0 chr4 50453343 50453366 -151874981 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 307 195 230 0 chr4 50453474 50453561 -151874786 - L1M4 LINE L1 -2177 3969 3863 247 275 12 12 chr4 50454319 50454399 -151873948 + (CATATA)n Simple_repeat Simple_repeat 5 84 0 2381 189 27 35 chr4 50454409 50455089 -151873258 - L1 LINE L1 -2005 4141 3336 1831 75 0 0 chr4 50455840 50456068 -151872279 - AluY SINE Alu -1 310 83 320 360 22 7 chr4 50457566 50457702 -151870645 - MIR SINE MIR -84 178 41 2060 124 7 0 chr4 50457777 50458093 -151870254 + AluSx SINE Alu 8 325 0 428 285 71 71 chr4 50459328 50459724 -151868623 + L2 LINE L2 1511 1906 -1408 1488 323 67 41 chr4 50459724 50460236 -151868111 + L2 LINE L2 2204 2742 -530 2176 122 0 0 chr4 50460236 50460531 -151867816 + AluSg SINE Alu 1 295 -15 1488 323 67 41 chr4 50460531 50460875 -151867472 + L2 LINE L2 2742 3076 -196 2089 188 5 14 chr4 50460915 50461047 -151867300 + MLT1A1 LTR MaLR 1 133 -232 3506 157 83 18 chr4 50461047 50461708 -151866639 + MER44D DNA MER2_type 1 704 -1 2089 188 5 14 chr4 50461708 50461943 -151866404 + MLT1A1 LTR MaLR 133 365 0 330 325 48 24 chr4 50461978 50462104 -151866243 + L2 LINE L2 3136 3264 -8 772 196 0 0 chr4 50462291 50462424 -151865923 + FLAM_A SINE Alu 1 133 0 3119 27 0 3 chr4 50462913 50463516 -151864831 - L1PA4 LINE L1 -522 5633 5032 4001 48 0 0 chr4 50463516 50464012 -151864335 + L1PA4 LINE L1 5658 6155 0 258 327 30 10 chr4 50464154 50464255 -151864092 + L3 LINE CR1 1001 1103 -474 35 41 0 0 chr4 50464453 50464502 -151863845 + AT_rich Low_complexity Low_complexity 1 49 0 202 178 41 27 chr4 50464522 50464595 -151863752 + (TA)n Simple_repeat Simple_repeat 2 75 0 257 155 26 39 chr4 50464779 50464934 -151863413 + (TA)n Simple_repeat Simple_repeat 2 154 0 1722 212 29 74 chr4 50465016 50465502 -151862845 - MLT2B1 LTR ERVL -56 464 1 222 253 53 53 chr4 50465533 50465628 -151862719 - L2 LINE L2 -1 3312 3218 * 378 344 70 31 chr4 50465620 50465847 -151862500 + L3 LINE CR1 1328 1563 -14 187 348 71 9 chr4 50466961 50467073 -151861274 - MIR SINE MIR -133 129 11 607 203 22 14 chr4 50467711 50467849 -151860498 + MER5B DNA MER1_type 40 178 0 342 240 102 91 chr4 50468390 50468665 -151859682 - LTR37A LTR ERV1 -68 358 81 232 250 0 0 chr4 50468926 50468982 -151859365 + MIR SINE MIR 169 224 -38 21 0 0 0 chr4 50469239 50469260 -151859087 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4 50470112 50470132 -151858215 + (TC)n Simple_repeat Simple_repeat 2 21 0 4301 157 137 3 chr4 50470371 50471351 -151856996 - L1MA9 LINE L1 -22 6290 5177 484 233 0 0 chr4 50472678 50472781 -151855566 - U13 snRNA snRNA 0 104 2 309 288 11 30 chr4 50472900 50472922 -151855425 + GA-rich Low_complexity Low_complexity 1 22 -332 338 103 0 44 chr4 50472922 50473013 -151855334 + L1PA7 LINE L1 6090 6154 0 309 288 11 30 chr4 50473013 50473261 -151855086 + GA-rich Low_complexity Low_complexity 22 354 0 309 310 53 11 chr4 50473482 50473669 -151854678 - L1ME3A LINE L1 -270 5900 5706 240 313 115 32 chr4 50473716 50473933 -151854414 - L1ME3A LINE L1 -2170 5638 5404 24 32 0 0 chr4 50474453 50474484 -151853863 + AT_rich Low_complexity Low_complexity 1 31 0 352 321 149 37 chr4 50474607 50474928 -151853419 + L1ME4a LINE L1 5420 5776 -2032 329 158 0 0 chr4 50475608 50475665 -151852682 - U2 snRNA snRNA -131 57 1 237 222 62 0 chr4 50476519 50476600 -151851747 + L1ME4a LINE L1 6025 6110 -11 191 268 0 0 chr4 50476667 50476708 -151851639 - L2 LINE L2 -11 3302 3262 276 363 51 25 chr4 50477344 50477501 -151850846 + MIR SINE MIR 31 191 -71 558 167 35 44 chr4 50477507 50477621 -151850726 + MLT1D LTR MaLR 1 113 -392 503 116 0 0 chr4 50477626 50477695 -151850652 + AluS SINE Alu 1 69 -243 965 69 15 8 chr4 50477697 50477828 -151850519 + AluSp/q SINE Alu 175 306 -7 2134 105 27 7 chr4 50477860 50477982 -151850365 + AluSx SINE Alu 5 123 -189 225 0 0 0 chr4 50477982 50478007 -151850340 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2134 105 27 7 chr4 50478007 50478178 -151850169 + AluSx SINE Alu 123 304 -8 1475 145 90 1 chr4 50478185 50478491 -151849856 + MLT1D LTR MaLR 129 504 -1 306 0 0 0 chr4 50478781 50478815 -151849532 + (TG)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr4 50478892 50478913 -151849434 + AT_rich Low_complexity Low_complexity 1 21 0 226 219 0 0 chr4 50479576 50479617 -151848730 + (TG)n Simple_repeat Simple_repeat 2 42 0 4023 133 19 72 chr4 50481379 50482505 -151845842 + L1PA15 LINE L1 4832 5873 -292 1780 125 31 0 chr4 50482615 50482902 -151845445 - L1MA4 LINE L1 -317 5983 5688 787 196 139 26 chr4 50483426 50483620 -151844727 - MER20 DNA MER1_type 0 219 4 551 200 9 0 chr4 50484222 50484327 -151844020 - L1 LINE L1 -2309 3837 3732 583 365 64 0 chr4 50484424 50484643 -151843704 + MIR SINE MIR 30 262 0 180 0 0 0 chr4 50484786 50484806 -151843541 + (CAT)n Simple_repeat Simple_repeat 1 20 0 532 295 115 5 chr4 50486553 50486753 -151841594 + MIR SINE MIR 13 234 -28 25 0 0 0 chr4 50487288 50487313 -151841034 + AT_rich Low_complexity Low_complexity 1 25 0 195 42 0 0 chr4 50488074 50488098 -151840249 + (GA)n Simple_repeat Simple_repeat 1 24 0 212 333 65 28 chr4 50488355 50488463 -151839884 + L2 LINE L2 2911 3022 -250 1435 297 83 34 chr4 50488517 50489080 -151839267 + MLT1E LTR MaLR 1 591 -2 312 91 0 0 chr4 50489185 50489229 -151839118 + (CTA)n Simple_repeat Simple_repeat 1 44 0 2161 107 0 0 chr4 50489229 50489509 -151838838 - AluY SINE Alu -31 280 1 512 269 192 0 chr4 50489629 50489837 -151838510 - MIR SINE MIR -1 261 14 22 0 0 0 chr4 50489891 50489913 -151838434 + AT_rich Low_complexity Low_complexity 1 22 0 1514 151 190 19 chr4 50491078 50491389 -151836958 + THE1B LTR MaLR 1 364 0 11372 96 3 8 chr4 50491391 50492975 -151835372 + THE1B-int LTR MaLR 4 1580 0 2037 137 76 17 chr4 50492975 50493319 -151835028 + THE1B LTR MaLR 1 364 0 1278 227 59 50 chr4 50493571 50493928 -151834419 - MSTD LTR MaLR -2 394 35 207 0 0 0 chr4 50494060 50494083 -151834264 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2091 113 10 0 chr4 50494091 50494384 -151833963 - AluSp SINE Alu -17 296 1 44047 40 4 1 chr4 50495062 50501196 -151827151 + L1PA3 LINE L1 2 6152 -3 522 29 0 0 chr4 50501579 50501649 -151826698 - L1MA3 LINE L1 0 6305 6236 203 194 0 0 chr4 50501810 50501846 -151826501 + (TA)n Simple_repeat Simple_repeat 1 36 0 1998 130 0 4 chr4 50502141 50502417 -151825930 + AluSq SINE Alu 1 275 -38 490 285 44 13 chr4 50502755 50502913 -151825434 - MER5A DNA MER1_type -18 171 9 231 36 0 0 chr4 50502934 50502962 -151825385 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 796 298 61 8 chr4 50504818 50505080 -151823267 - L2 LINE L2 -955 2359 2084 327 246 23 146 chr4 50505097 50505268 -151823079 - MIR SINE MIR -50 212 63 577 262 6 12 chr4 50505282 50505450 -151822897 - L2 LINE L2 -1243 2071 1905 653 235 105 178 chr4 50505450 50505856 -151822491 - L2 LINE L2 -2391 923 498 551 188 21 0 chr4 50505856 50505952 -151822395 + AluSg/x SINE Alu 182 279 -30 653 235 105 178 chr4 50505952 50506229 -151822118 - L2 LINE L2 -2816 498 202 2110 129 0 16 chr4 50506232 50506543 -151821804 + AluSx SINE Alu 1 306 -6 221 274 0 16 chr4 50506569 50506631 -151821716 + MIR SINE MIR 195 255 -7 221 261 173 84 chr4 50507734 50507983 -151820364 - L2 LINE L2 0 3313 3043 339 85 0 0 chr4 50508233 50508280 -151820067 + (TG)n Simple_repeat Simple_repeat 2 48 0 350 349 52 31 chr4 50508286 50508478 -151819869 - MIR SINE MIR -56 206 11 297 0 0 0 chr4 50508533 50508566 -151819781 + (CA)n Simple_repeat Simple_repeat 1 33 0 1596 197 39 11 chr4 50509108 50509463 -151818884 - MLT1A1 LTR MaLR 0 365 1 217 286 0 0 chr4 50509774 50509830 -151818517 - L2 LINE L2 -72 3241 3186 382 324 28 21 chr4 50510634 50510776 -151817571 - MIR3 SINE MIR -10 198 56 442 293 78 29 chr4 50512493 50512698 -151815649 - MIR SINE MIR -47 215 1 2250 114 7 0 chr4 50513425 50513731 -151814616 - AluSx SINE Alu -3 309 2 1161 331 107 47 chr4 50513917 50514355 -151813992 - L2 LINE L2 0 3272 2862 16523 129 26 9 chr4 50514355 50515708 -151812639 + Tigger4(Zombi) DNA MER2_type 2 1330 -1401 1816 149 7 3 chr4 50515708 50515990 -151812357 + AluSx SINE Alu 1 283 -29 275 0 0 28 chr4 50515993 50516029 -151812318 + (TAA)n Simple_repeat Simple_repeat 3 37 0 16523 129 26 9 chr4 50516029 50517355 -151810992 + Tigger4(Zombi) DNA MER2_type 1331 2731 0 1161 331 107 47 chr4 50517355 50518111 -151810236 - L2 LINE L2 -410 2862 2004 1412 176 4 19 chr4 50518113 50518380 -151809967 + Tigger7 DNA MER2_type 1 263 -287 23 54 0 0 chr4 50518800 50518837 -151809510 + AT_rich Low_complexity Low_complexity 1 37 0 203 135 54 0 chr4 50518894 50518931 -151809416 + (TATG)n Simple_repeat Simple_repeat 2 40 0 201 39 0 0 chr4 50518931 50518957 -151809390 + (GA)n Simple_repeat Simple_repeat 2 27 0 376 247 143 44 chr4 50519134 50519316 -151809031 + MIR SINE MIR 35 234 -28 6605 28 0 0 chr4 50520126 50520927 -151807420 - L1PA3 LINE L1 -2 6153 5353 3514 34 0 0 chr4 50520927 50521367 -151806980 + L1P LINE L1 3435 3874 -2272 2489 108 8 3 chr4 50521626 50521979 -151806368 - THE1A LTR MaLR 0 355 1 457 214 52 70 chr4 50522379 50522608 -151805739 - HAL1 LINE L1 0 2507 2283 243 61 0 0 chr4 50522643 50522676 -151805671 + (CA)n Simple_repeat Simple_repeat 2 34 0 787 285 179 13 chr4 50522981 50523455 -151804892 - HAL1 LINE L1 -325 2182 1630 381 58 0 0 chr4 50523610 50523662 -151804685 + (CCTG)n Simple_repeat Simple_repeat 2 53 0 2108 112 26 3 chr4 50523692 50523996 -151804351 - AluSx SINE Alu -1 311 1 415 37 0 0 chr4 50524030 50524084 -151804263 - L1PA6 LINE L1 -2 6152 6099 485 298 147 16 chr4 50524547 50524755 -151803592 + MIR SINE MIR 33 262 0 348 203 0 0 chr4 50524757 50524821 -151803526 + L2 LINE L2 3250 3313 0 334 384 0 0 chr4 50524852 50524964 -151803383 + L2 LINE L2 3134 3245 -27 277 366 79 20 chr4 50525604 50525806 -151802541 - MIR SINE MIR -29 233 20 674 293 93 39 chr4 50526177 50526587 -151801760 + LTR67 LTR ERVL 81 512 -45 758 280 85 8 chr4 50526657 50526893 -151801454 - MIR SINE MIR -2 260 7 258 164 0 39 chr4 50526954 50527012 -151801335 - MLT2D LTR ERVL 0 414 367 280 187 13 13 chr4 50527013 50527088 -151801259 + (TA)n Simple_repeat Simple_repeat 2 76 0 695 246 5 6 chr4 50527097 50527120 -151801227 - MLT2D LTR ERVL -41 479 457 264 30 0 0 chr4 50527120 50527153 -151801194 + (GA)n Simple_repeat Simple_repeat 2 34 0 695 246 5 6 chr4 50527153 50527294 -151801053 - MLT2D LTR ERVL -63 457 217 * 1018 135 45 35 chr4 50527286 50527486 -151800861 - MLT1B LTR MaLR -188 202 1 794 302 9 17 chr4 50529577 50529809 -151798538 - MIR SINE MIR 0 262 33 1170 313 202 15 chr4 50530059 50531115 -151797232 - L2 LINE L2 -350 2964 1712 322 362 51 29 chr4 50531493 50531631 -151796716 - L2 LINE L2 -9 3263 3123 291 28 0 0 chr4 50531735 50531771 -151796576 + (TG)n Simple_repeat Simple_repeat 2 37 0 707 222 198 5 chr4 50531843 50532050 -151796297 - MIR SINE MIR -11 251 5 255 339 0 28 chr4 50533075 50533255 -151795092 + GA-rich Low_complexity Low_complexity 3 177 0 * 274 273 16 44 chr4 50533201 50533384 -151794963 + A-rich Low_complexity Low_complexity 2 179 0 1381 229 60 56 chr4 50534254 50534751 -151793596 + LTR33 LTR ERVL 23 521 0 271 326 29 47 chr4 50535070 50535242 -151793105 + L2 LINE L2 2605 2773 -541 932 212 5 0 chr4 50537094 50537283 -151791064 + MER20 DNA MER1_type 30 219 0 2087 126 0 10 chr4 50537541 50537835 -151790512 + AluSx SINE Alu 1 291 -21 450 254 112 15 chr4 50537935 50538069 -151790278 + MIR3 SINE MIR 10 156 -52 252 0 0 0 chr4 50538150 50538178 -151790169 + (CA)n Simple_repeat Simple_repeat 2 29 0 309 326 74 37 chr4 50538305 50538440 -151789907 + MIR3 SINE MIR 54 193 -15 22 35 0 0 chr4 50538702 50538731 -151789616 + AT_rich Low_complexity Low_complexity 1 29 0 2186 124 0 0 chr4 50538934 50539232 -151789115 + AluSg SINE Alu 13 310 0 6481 98 5 0 chr4 50539637 50541053 -151787294 - L1PA11 LINE L1 0 6174 4752 271 324 83 9 chr4 50542246 50542354 -151785993 + MIR SINE MIR 36 151 -111 911 196 101 49 chr4 50542612 50542898 -151785449 - LTR53 LTR ERVL 0 519 219 1283 180 0 9 chr4 50542901 50543129 -151785218 + AluJb SINE Alu 82 307 -5 1174 179 19 0 chr4 50543129 50543341 -151785006 - LTR53 LTR ERVL -295 224 9 188 300 33 56 chr4 50543547 50543637 -151784710 - L2 LINE L2 -463 2851 2764 326 358 6 30 chr4 50543905 50544070 -151784277 - L2 LINE L2 -560 2754 2594 528 287 57 81 chr4 50544145 50544480 -151783867 - MLT1I LTR MaLR -2 407 81 447 326 58 39 chr4 50544544 50544802 -151783545 - L2 LINE L2 -826 2488 2226 2484 50 0 3 chr4 50545081 50545382 -151782965 + AluY SINE Alu 1 300 -11 270 143 0 0 chr4 50545483 50545546 -151782801 + (G)n Simple_repeat Simple_repeat 1 63 0 190 86 60 52 chr4 50545544 50545660 -151782687 + (GTGTG)n Simple_repeat Simple_repeat 5 121 0 * 628 143 0 0 chr4 50545647 50545780 -151782567 + (G)n Simple_repeat Simple_repeat 1 133 0 210 222 0 0 chr4 50545802 50545847 -151782500 + G-rich Low_complexity Low_complexity 1 45 0 1100 79 0 0 chr4 50546180 50546319 -151782028 - AluSp/q SINE Alu -13 300 162 1328 99 14 5 chr4 50546319 50546532 -151781815 - pTR5 LTR ERV1 -2047 391 177 317 255 10 0 chr4 50546541 50546639 -151781708 - LTR30 LTR ERV1 -80 642 544 4245 132 41 61 chr4 50546639 50547655 -151780692 - pTR5 LTR ERV1 -413 2025 743 1302 90 0 6 chr4 50547655 50547822 -151780525 - AluSx SINE Alu -146 166 1 283 253 280 0 chr4 50547837 50547990 -151780357 - MIR SINE MIR -65 197 9 349 71 35 47 chr4 50548211 50548281 -151780066 + (CTATA)n Simple_repeat Simple_repeat 2 72 -13 1990 183 3 5 chr4 50548281 50548648 -151779699 + MER47A DNA MER2_type 1 366 0 349 71 35 47 chr4 50548648 50548662 -151779685 + (CTATA)n Simple_repeat Simple_repeat 72 85 0 263 190 38 38 chr4 50548683 50548762 -151779585 - MER116 DNA Mariner -1 79 1 408 304 123 22 chr4 50548844 50549071 -151779276 + MIR SINE MIR 13 262 0 855 198 94 0 chr4 50551098 50551290 -151777057 - MER20 DNA MER1_type -9 210 1 369 234 81 27 chr4 50553040 50553151 -151775196 - L1ME4a LINE L1 -75 6046 5930 221 208 19 0 chr4 50553302 50553355 -151774992 + A-rich Low_complexity Low_complexity 2 55 0 21 0 0 0 chr4 50553742 50553763 -151774584 + AT_rich Low_complexity Low_complexity 1 21 0 2167 241 96 43 chr4 50554450 50555210 -151773137 - MER21B LTR ERV1 -51 812 13 658 330 59 20 chr4 50555817 50556075 -151772272 + L3 LINE CR1 491 764 -813 1884 141 13 37 chr4 50556075 50556374 -151771973 + AluSx SINE Alu 3 294 -18 658 330 59 20 chr4 50556374 50556418 -151771929 + L3 LINE CR1 764 805 -772 220 303 53 75 chr4 50557585 50557773 -151770574 + L3 LINE CR1 1209 1392 -185 246 314 31 38 chr4 50558848 50559007 -151769340 - MLT1K LTR MaLR -290 298 141 2185 118 0 0 chr4 50559679 50559984 -151768363 + AluSg SINE Alu 1 305 -5 291 348 43 7 chr4 50560568 50560706 -151767641 - L2 LINE L2 0 3313 3171 321 202 40 50 chr4 50560779 50560878 -151767469 - LTR33A LTR ERVL -9 514 417 2346 89 0 16 chr4 50561122 50561425 -151766922 - AluSc SINE Alu -11 298 1 238 307 0 0 chr4 50561429 50561504 -151766843 - LTR33 LTR ERVL -347 174 100 234 280 0 0 chr4 50561501 50561576 -151766771 - LTR50 LTR ERVL -718 77 3 * 232 211 0 39 chr4 50562083 50562135 -151766212 - L2 LINE L2 -91 3181 3132 253 341 192 37 chr4 50562475 50562689 -151765658 + L2 LINE L2 3009 3255 -17 2029 116 131 28 chr4 50563934 50564322 -151764025 - MSTA LTR MaLR 0 428 1 343 278 62 60 chr4 50564566 50564832 -151763515 - L1MC4a LINE L1 -302 5819 5739 2029 128 21 53 chr4 50564832 50565208 -151763139 - THE1B LTR MaLR 0 364 1 343 278 62 60 chr4 50565208 50565326 -151763021 - L1MC4a LINE L1 -382 5739 5623 619 302 98 35 chr4 50565465 50566351 -151761996 - L1MC4a LINE L1 -771 5375 4610 2245 118 0 20 chr4 50566351 50566656 -151761691 - AluSx SINE Alu -13 299 1 619 302 98 35 chr4 50566656 50567290 -151761057 - L1MC4a LINE L1 -1536 4610 4018 306 67 0 0 chr4 50567341 50567386 -151760961 + (GA)n Simple_repeat Simple_repeat 2 46 0 1149 76 0 0 chr4 50567386 50567543 -151760804 - AluY SINE Alu -30 281 125 2242 75 0 0 chr4 50567552 50567873 -151760474 - AluY SINE Alu 0 321 1 316 269 99 16 chr4 50567924 50568106 -151760241 - L1MC4a LINE L1 -2208 3938 3742 372 302 41 30 chr4 50568724 50568893 -151759454 - HAL1 LINE L1 -1170 1337 1167 252 0 0 0 chr4 50569310 50569338 -151759009 + (TC)n Simple_repeat Simple_repeat 1 28 0 2078 128 27 3 chr4 50569368 50569696 -151758651 - L1PB3 LINE L1 -3 6151 5816 901 76 0 0 chr4 50569700 50569819 -151758528 - AluY SINE Alu 0 311 193 1192 129 15 10 chr4 50569819 50570020 -151758327 - L1PB3 LINE L1 -341 5813 5612 605 124 106 0 chr4 50570018 50570131 -151758216 + L1PB3 LINE L1 5469 5593 -563 * 631 24 24 0 chr4 50570582 50570667 -151757680 + (TCTA)n Simple_repeat Simple_repeat 2 88 0 405 58 0 0 chr4 50573261 50573313 -151755034 + (CA)n Simple_repeat Simple_repeat 1 52 0 252 302 23 12 chr4 50574322 50574408 -151753939 + MIR SINE MIR 77 163 -99 209 287 99 40 chr4 50575826 50575927 -151752420 - MIR SINE MIR -56 152 46 536 278 11 84 chr4 50576047 50576238 -151752109 + MIR SINE MIR 9 185 -77 918 278 56 72 chr4 50576452 50576609 -151751738 - L2 LINE L2 -44 3269 3111 1829 152 26 0 chr4 50576609 50576879 -151751468 + AluJb SINE Alu 10 286 -26 918 278 56 72 chr4 50576879 50577167 -151751180 - L2 LINE L2 -202 3111 2831 209 320 90 40 chr4 50577310 50577410 -151750937 - L2 LINE L2 -25 3288 3184 3602 150 108 6 chr4 50577827 50578529 -151749818 - LTR1B LTR ERV1 -52 774 1 437 353 42 15 chr4 50579077 50579338 -151749009 + L1ME LINE L1 914 1181 -5766 426 230 54 13 chr4 50579754 50579922 -151748425 + L1ME LINE L1 1316 1563 -5384 1906 193 21 19 chr4 50580004 50580428 -151747919 + L1MD2 LINE L1 5718 6142 -217 666 234 7 0 chr4 50580429 50580583 -151747764 + L1MD2 LINE L1 6195 6349 -10 252 282 176 0 chr4 50580997 50581082 -151747265 + L2 LINE L2 3214 3313 0 1957 167 37 130 chr4 50581367 50582042 -151746305 - LTR9 LTR ERV1 0 612 1 25 51 0 0 chr4 50582299 50582338 -151746009 + AT_rich Low_complexity Low_complexity 1 39 0 1808 131 3 22 chr4 50582949 50583301 -151745046 - MER4A LTR ERV1 0 664 261 605 112 10 10 chr4 50583301 50583399 -151744948 - MER4A LTR ERV1 -566 98 1 855 308 58 50 chr4 50583945 50584425 -151743922 - MLT1K LTR MaLR -10 578 95 220 191 16 48 chr4 50584569 50584632 -151743715 + MER5A DNA MER1_type 127 187 -2 457 242 35 91 chr4 50584735 50584966 -151743381 - L2 LINE L2 -7 3306 3089 294 228 118 59 chr4 50584964 50585100 -151743247 - L2 LINE L2 -340 2974 2831 * 373 302 58 29 chr4 50585750 50585889 -151742458 + MIR3 SINE MIR 4 146 -62 2059 111 0 14 chr4 50586096 50586420 -151741927 - AluSx SINE Alu 0 320 1 249 105 0 0 chr4 50586430 50586468 -151741879 - Alu SINE Alu -7 294 257 279 364 23 49 chr4 50586468 50586732 -151741615 - L2 LINE L2 -600 2714 2458 864 168 28 11 chr4 50586752 50586931 -151741416 - MLT2C2 LTR ERVL -250 214 33 2171 175 42 26 chr4 50587829 50588281 -151740066 - MLT2C2 LTR ERVL 0 464 6 521 215 50 8 chr4 50588304 50588425 -151739922 - L2 LINE L2 0 3313 3188 302 230 44 53 chr4 50588405 50588518 -151739829 - L2 LINE L2 -890 2424 2313 * 253 296 0 0 chr4 50588771 50588842 -151739505 + L2 LINE L2 3182 3252 -61 343 260 0 13 chr4 50589330 50589407 -151738940 + L2 LINE L2 3238 3313 0 387 41 0 0 chr4 50590598 50590647 -151737700 + (CA)n Simple_repeat Simple_repeat 2 50 0 353 335 99 28 chr4 50591167 50591349 -151736998 - MIR3 SINE MIR -3 205 11 259 318 146 34 chr4 50592002 50592323 -151736024 + L2 LINE L2 1737 2093 -1221 265 359 77 34 chr4 50592336 50592715 -151735632 + L2 LINE L2 2230 2624 -690 324 340 86 14 chr4 50592803 50593094 -151735253 + MER102b DNA MER1_type 2 313 -28 207 311 0 16 chr4 50593194 50593255 -151735092 + L2 LINE L2 3238 3297 -16 * 214 71 0 0 chr4 50593229 50593257 -151735090 + MIR SINE MIR 227 254 -8 244 314 52 57 chr4 50593403 50593613 -151734734 + MIR SINE MIR 52 260 -2 467 257 82 23 chr4 50593893 50594064 -151734283 + MIR SINE MIR 20 200 -62 197 263 18 18 chr4 50594264 50594321 -151734026 - L2 LINE L2 0 3272 3216 624 270 160 5 chr4 50594615 50594996 -151733351 + L1ME4a LINE L1 5613 6052 -69 378 0 0 0 chr4 50595046 50595088 -151733259 + (CA)n Simple_repeat Simple_repeat 1 42 0 357 43 0 0 chr4 50595149 50595196 -151733151 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 213 65 0 0 chr4 50596097 50596128 -151732219 + (A)n Simple_repeat Simple_repeat 1 31 0 24 32 0 0 chr4 50598052 50598083 -151730264 + AT_rich Low_complexity Low_complexity 1 31 0 1777 165 25 35 chr4 50600117 50600432 -151727915 + AluJo SINE Alu 1 312 0 2378 95 3 0 chr4 50701938 50702244 -151626103 + AluSg SINE Alu 1 307 -3 2202 112 3 13 chr4 50702654 50702966 -151625381 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr4 50702977 50702998 -151625349 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr4 50703043 50703064 -151625283 + (A)n Simple_repeat Simple_repeat 1 21 0 1763 148 0 53 chr4 50703207 50703510 -151624837 - AluSx SINE Alu -25 287 1 207 323 91 10 chr4 50703525 50703624 -151624723 - MIR SINE MIR -70 192 86 637 196 9 0 chr4 50703792 50703904 -151624443 - MER81 DNA DNA 0 114 2 433 208 0 0 chr4 50704033 50704110 -151624237 + MIR SINE MIR 47 123 -139 1313 210 52 36 chr4 50704110 50704318 -151624029 - MLT1A1 LTR MaLR 0 365 149 2437 29 0 0 chr4 50704318 50704595 -151623752 - AluYa5 SINE Alu -5 306 30 1313 210 52 36 chr4 50704595 50704695 -151623652 - MLT1A1 LTR MaLR -216 149 52 303 291 33 5 chr4 50704845 50704982 -151623365 + L1MC4a LINE L1 5792 5936 -185 497 309 22 17 chr4 50705206 50705384 -151622963 - MIR SINE MIR -25 237 59 26 82 0 0 chr4 50705515 50705576 -151622771 + AT_rich Low_complexity Low_complexity 1 61 0 484 261 179 63 chr4 50705582 50705981 -151622366 + MLT1G1 LTR MaLR 1 529 -66 233 19 19 75 chr4 50705988 50706041 -151622306 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 1075 186 0 5 chr4 50706148 50706336 -151622011 + MLT2D LTR ERVL 1 187 -227 7568 15 0 0 chr4 50706336 50707181 -151621166 - L1PA2 LINE L1 -4 6151 5307 326 278 35 9 chr4 50707184 50707299 -151621048 + MLT2D LTR ERVL 190 307 -90 1807 186 43 32 chr4 50707468 50707838 -151620509 + MLT1A2 LTR MaLR 1 374 0 2313 120 45 31 chr4 50707905 50708263 -151620084 + THE1B LTR MaLR 1 363 -1 1874 186 46 11 chr4 50708792 50709142 -151619205 + MLT1A1 LTR MaLR 4 365 0 249 214 0 0 chr4 50710076 50710118 -151618229 + MER82 DNA MER2_type 612 653 0 188 316 97 35 chr4 50710884 50710998 -151617349 - L2 LINE L2 -4 3309 3189 398 281 79 0 chr4 50711053 50711167 -151617180 + L2 LINE L2 3191 3313 0 638 272 67 0 chr4 50711194 50711400 -151616947 - MIR SINE MIR -3 259 41 781 302 112 33 chr4 50711580 50712129 -151616218 + L2 LINE L2 2669 3307 -6 379 270 102 22 chr4 50712408 50712545 -151615802 - MER5B DNA MER1_type -3 175 28 256 300 43 50 chr4 50712833 50712973 -151615374 - L2 LINE L2 -35 3278 3140 1736 168 20 23 chr4 50713001 50713305 -151615042 - AluJo SINE Alu -9 303 1 762 182 6 11 chr4 50713364 50713545 -151614802 + CT-rich Low_complexity Low_complexity 1 180 0 2079 61 0 26 chr4 50713927 50714191 -151614156 + AluY SINE Alu 50 306 -5 1293 121 0 0 chr4 50714547 50714720 -151613627 + AluSg/x SINE Alu 130 302 -8 2044 138 3 0 chr4 50714790 50715086 -151613261 + AluSq SINE Alu 1 297 -16 2269 123 0 0 chr4 50715983 50716291 -151612056 - AluSq SINE Alu -5 308 1 6698 78 39 0 chr4 50716340 50717497 -151610850 - L1PA11 LINE L1 0 6174 4999 395 265 109 83 chr4 50718852 50719082 -151609265 + MIR SINE MIR 22 257 -5 629 244 86 10 chr4 50719086 50719295 -151609052 - MIR SINE MIR 0 262 38 183 269 0 19 chr4 50720124 50720176 -151608171 + L2 LINE L2 3256 3306 -7 2191 130 0 0 chr4 50720571 50720879 -151607468 - AluSx SINE Alu -4 308 1 668 254 117 10 chr4 50720925 50721122 -151607225 + MIR SINE MIR 2 219 -43 760 109 0 0 chr4 50722713 50722823 -151605524 - L1PA5 LINE L1 -4 6150 6041 28 61 0 0 chr4 50723885 50723934 -151604413 + AT_rich Low_complexity Low_complexity 1 49 0 606 229 98 6 chr4 50724460 50724707 -151603640 - MER46C DNA MER2_type -26 312 1 194 172 35 69 chr4 50726399 50726457 -151601890 - MIR SINE MIR -74 188 133 1327 114 16 102 chr4 50726516 50726770 -151601577 - AluJb SINE Alu -16 296 65 1838 88 4 25 chr4 50727228 50727494 -151600853 + AluSx SINE Alu 50 310 0 531 174 82 0 chr4 50728083 50728181 -151600166 - AluJb SINE Alu -33 279 174 2642 72 44 6 chr4 50728222 50728583 -151599764 + THE1C LTR MaLR 1 375 0 513 287 123 27 chr4 50729303 50729564 -151598783 + L2 LINE L2 1890 2175 -1139 252 0 0 0 chr4 50729792 50729820 -151598527 + (TC)n Simple_repeat Simple_repeat 2 29 0 198 0 0 0 chr4 50729819 50729841 -151598506 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 297 324 108 44 chr4 50731173 50731377 -151596970 + L3 LINE CR1 1175 1391 -186 281 329 91 29 chr4 50731746 50731989 -151596358 + L2 LINE L2 3044 3301 -12 195 276 86 0 chr4 50732080 50732138 -151596209 - MIR SINE MIR -115 93 31 229 295 133 60 chr4 50732385 50732551 -151595796 + MIR SINE MIR 26 203 -59 1932 153 11 0 chr4 50733395 50733706 -151594641 - AluSx SINE Alu 0 314 1 5488 144 12 2 chr4 50734181 50735368 -151592979 - L1P LINE L1 -1385 4761 3541 397 298 30 18 chr4 50735461 50735629 -151592718 - Charlie8 DNA MER1_type -2178 239 70 348 311 34 46 chr4 50735692 50735908 -151592439 - MIR SINE MIR -46 216 5 2252 110 0 0 chr4 50736371 50736663 -151591684 + AluSg SINE Alu 5 296 -14 3978 15 0 0 chr4 50736711 50737165 -151591182 + L1PA2 LINE L1 5701 6154 -1 2126 118 0 19 chr4 50737379 50737693 -151590654 - AluSq SINE Alu -5 308 1 2822 294 81 81 chr4 50737953 50738610 -151589737 - L2 LINE L2 -6 3307 2651 1591 204 138 15 chr4 50738610 50739022 -151589325 + MLT1C LTR MaLR 3 465 -2 2822 294 81 81 chr4 50739022 50740520 -151587827 - L2 LINE L2 -662 2651 1150 233 241 98 54 chr4 50740943 50741055 -151587292 + L3 LINE CR1 293 409 -1168 2301 108 10 0 chr4 50741247 50741554 -151586793 + AluSq SINE Alu 1 310 -3 252 86 0 0 chr4 50741554 50741589 -151586758 + (GGGAA)n Simple_repeat Simple_repeat 1 35 0 2483 71 3 0 chr4 50741732 50742040 -151586307 + AluY SINE Alu 1 309 -2 272 271 47 28 chr4 50743405 50743512 -151584835 - L2 LINE L2 -223 3049 2941 422 294 109 16 chr4 50745061 50745245 -151583102 + MIR SINE MIR 12 212 -50 6766 130 21 0 chr4 50748083 50749784 -151578563 - L1MA3 LINE L1 -2 7722 5980 2474 162 16 14 chr4 50749784 50750209 -151578138 + MSTB LTR MaLR 1 426 0 5291 174 150 50 chr4 50750211 50751646 -151576701 + MSTB-int LTR MaLR 3 1580 0 2027 135 108 42 chr4 50751646 50752000 -151576347 + MSTB LTR MaLR 1 385 -41 2427 87 0 6 chr4 50752000 50752312 -151576035 - AluY SINE Alu -1 310 1 2027 135 108 42 chr4 50752312 50752357 -151575990 + MSTB LTR MaLR 385 426 0 5846 186 10 13 chr4 50752359 50753110 -151575237 - L1MA3 LINE L1 -1583 5982 5234 2225 120 0 0 chr4 50753110 50753411 -151574936 + AluSq SINE Alu 3 303 -10 5846 186 10 13 chr4 50753411 50753909 -151574438 - L1MA3 LINE L1 -2331 5234 4736 8532 134 29 21 chr4 50753909 50755309 -151573038 - L1MA3 LINE L1 -6142 1423 13 21 36 0 0 chr4 50755311 50755339 -151573008 + AT_rich Low_complexity Low_complexity 1 28 0 1704 144 31 34 chr4 50756240 50756566 -151571781 - MER44D DNA MER2_type -8 601 7 26 0 0 0 chr4 50756625 50756651 -151571696 + AT_rich Low_complexity Low_complexity 1 26 0 223 306 28 0 chr4 50759908 50759980 -151568367 + MIR SINE MIR 45 118 -90 338 313 0 18 chr4 50761121 50761233 -151567114 + MER81 DNA DNA 1 110 -4 686 268 26 41 chr4 50761624 50761818 -151566529 - MIR SINE MIR -69 193 3 313 331 93 6 chr4 50761858 50762030 -151566317 + MIR SINE MIR 45 231 -31 201 74 0 0 chr4 50762038 50762065 -151566282 + (TTA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr4 50763575 50763597 -151564750 + AT_rich Low_complexity Low_complexity 1 22 0 333 237 88 9 chr4 50763659 50763773 -151564574 + MIR SINE MIR 130 252 -10 259 167 0 0 chr4 50763776 50763818 -151564529 - MLT1C LTR MaLR 0 467 426 2639 199 40 49 chr4 50763819 50764513 -151563834 - MLT1D-int LTR MaLR -511 860 173 513 266 222 12 chr4 50764527 50764937 -151563410 + L1M4 LINE L1 3809 4304 -1842 * 782 173 18 18 chr4 50764934 50765102 -151563245 - MLT1D-int LTR MaLR -1203 168 1 1570 234 82 19 chr4 50765102 50765576 -151562771 - MLT1D LTR MaLR 0 505 2 947 243 24 0 chr4 50765862 50766068 -151562279 - MER58A DNA MER1_type -8 216 6 299 203 54 14 chr4 50766344 50766418 -151561929 + MLT1J LTR MaLR 1 77 -434 825 222 135 24 chr4 50766588 50766915 -151561432 + MLT1A1 LTR MaLR 1 396 0 304 284 0 68 chr4 50766933 50767081 -151561266 + MLT1J LTR MaLR 328 465 -46 539 288 32 48 chr4 50767818 50768068 -151560279 + MLT1I LTR MaLR 2 247 -162 6145 86 8 9 chr4 50768221 50769093 -151559254 + L1MA1 LINE L1 5428 6298 -4 658 247 82 13 chr4 50769232 50769463 -151558884 + MER113 DNA MER1_type? 275 521 0 2327 85 0 25 chr4 50769755 50770074 -151558273 + AluY SINE Alu 1 311 0 579 284 19 13 chr4 50771140 50771295 -151557052 - L2 LINE L2 0 3272 3117 1548 202 28 0 chr4 50771296 50771583 -151556764 - AluJo SINE Alu -17 295 1 27 0 0 0 chr4 50771595 50771622 -151556725 + AT_rich Low_complexity Low_complexity 1 27 0 295 385 142 5 chr4 50771777 50771982 -151556365 - L2 LINE L2 -357 2957 2725 671 349 68 79 chr4 50772564 50773381 -151554966 - L3 LINE CR1 -58 1519 715 1916 169 0 3 chr4 50773381 50773671 -151554676 - AluJo SINE Alu -23 289 1 671 349 68 79 chr4 50773671 50773887 -151554460 - L3 LINE CR1 -862 715 498 253 305 121 11 chr4 50774336 50774526 -151553821 + L2 LINE L2 2494 2704 -610 266 93 70 0 chr4 50774526 50774569 -151553778 - MER75 DNA T2_type 0 514 469 571 328 119 44 chr4 50774602 50775172 -151553175 + L2 LINE L2 2702 3312 -1 438 185 37 0 chr4 50775310 50775391 -151552956 + MER117 DNA MER1_type 67 150 -47 245 271 156 57 chr4 50776893 50777015 -151551332 - MIR SINE MIR -26 182 48 457 305 43 11 chr4 50777051 50777238 -151551109 + MIR SINE MIR 70 262 0 21 0 0 0 chr4 50777833 50777854 -151550493 + AT_rich Low_complexity Low_complexity 1 21 0 451 193 88 26 chr4 50777886 50778000 -151550347 - MIR SINE MIR -23 239 119 438 296 22 15 chr4 50778586 50778721 -151549626 + MLT1K LTR MaLR 94 229 -359 32 43 0 0 chr4 50778722 50778768 -151549579 + AT_rich Low_complexity Low_complexity 1 46 0 201 98 39 20 chr4 50778799 50778850 -151549497 + (TATAA)n Simple_repeat Simple_repeat 5 56 0 346 337 34 17 chr4 50778980 50779155 -151549192 + MLT1K LTR MaLR 248 425 -163 1466 303 114 30 chr4 50779176 50779279 -151549068 + L2 LINE L2 2113 2206 -1107 2013 155 3 0 chr4 50779279 50779588 -151548759 - AluSx SINE Alu -2 310 1 1466 303 114 30 chr4 50779588 50780601 -151547746 + L2 LINE L2 2206 3312 -1 3708 185 45 67 chr4 50781468 50781612 -151546735 - L1MA10 LINE L1 0 6334 6188 324 0 0 0 chr4 50781612 50781648 -151546699 + (TG)n Simple_repeat Simple_repeat 2 37 0 3708 185 45 67 chr4 50781648 50782636 -151545711 - L1MA10 LINE L1 -146 6188 5232 668 307 61 4 chr4 50782928 50783159 -151545188 - MIR SINE MIR -1 261 18 263 301 143 19 chr4 50783206 50783465 -151544882 - L1MC/D LINE L1 -1992 5816 5526 671 179 133 0 chr4 50783771 50783922 -151544425 - MER115 DNA AcHobo -27 666 496 988 175 11 16 chr4 50783927 50784116 -151544231 - MER5A DNA MER1_type 0 189 2 606 226 26 37 chr4 50784219 50784409 -151543938 - MER20 DNA MER1_type 0 219 32 3336 107 49 8 chr4 50784410 50784917 -151543430 + MER1A DNA MER1_type 1 528 -1 230 108 27 0 chr4 50784918 50784955 -151543392 - MER20 DNA MER1_type -181 38 1 475 15 45 0 chr4 50785894 50785961 -151542386 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2146 115 0 7 chr4 50785961 50786256 -151542091 - AluSx SINE Alu -19 293 1 23 0 0 0 chr4 50786489 50786512 -151541835 + AT_rich Low_complexity Low_complexity 1 23 0 21 89 0 0 chr4 50787149 50787205 -151541142 + AT_rich Low_complexity Low_complexity 1 56 0 2227 120 10 0 chr4 50787527 50787828 -151540519 + AluSq SINE Alu 1 304 -9 466 337 115 33 chr4 50788424 50788869 -151539478 - L2 LINE L2 -85 3228 2751 2210 134 25 27 chr4 50789638 50790003 -151538344 + THE1B LTR MaLR 1 364 0 11973 78 12 2 chr4 50790003 50791567 -151536780 + THE1B-int LTR MaLR 1 1580 0 2252 135 28 28 chr4 50791567 50791931 -151536416 + THE1B LTR MaLR 1 364 0 180 111 0 0 chr4 50792361 50792388 -151535959 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 236 305 160 46 chr4 50792520 50792651 -151535696 + L2 LINE L2 3108 3253 -19 2041 167 52 20 chr4 50793398 50793836 -151534511 + L1MB5 LINE L1 5715 6166 -8 260 324 7 50 chr4 50795321 50795460 -151532887 - L2 LINE L2 -1 3312 3180 247 147 44 88 chr4 50796910 50796978 -151531369 + MLT1L LTR MaLR 15 79 -536 329 308 142 4 chr4 50797695 50798166 -151530181 - L1ME4a LINE L1 -4 6117 5582 1029 139 0 58 chr4 50798464 50798637 -151529710 + AluSg/x SINE Alu 134 296 -16 1960 126 18 4 chr4 50798780 50799057 -151529290 + AluSx SINE Alu 1 281 -31 345 146 0 0 chr4 50799215 50799270 -151529077 - AluSg/x SINE Alu -37 263 209 198 0 0 0 chr4 50799275 50799297 -151529050 + (A)n Simple_repeat Simple_repeat 1 22 0 196 309 0 0 chr4 50799880 50799935 -151528412 + L2 LINE L2 3247 3301 -12 2425 71 0 3 chr4 50801157 50801453 -151526894 - AluY SINE Alu -16 295 1 662 241 59 68 chr4 50801532 50801972 -151526375 - L1MC5 LINE L1 -436 7525 7090 447 132 29 0 chr4 50802697 50802765 -151525582 - MER5B DNA MER1_type -6 172 103 2343 84 0 16 chr4 50803162 50803473 -151524874 - AluY SINE Alu -5 306 1 256 319 25 25 chr4 50803711 50803830 -151524517 + L2 LINE L2 3141 3259 -13 21 0 0 0 chr4 50803896 50803917 -151524430 + AT_rich Low_complexity Low_complexity 1 21 0 228 184 0 0 chr4 50804219 50804268 -151524079 + (TA)n Simple_repeat Simple_repeat 2 50 0 1769 117 120 0 chr4 50804663 50804764 -151523583 + AluSx SINE Alu 1 88 -224 432 0 0 0 chr4 50804764 50804812 -151523535 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1769 117 120 0 chr4 50804812 50804976 -151523371 + AluSx SINE Alu 88 298 -14 942 124 5 4 chr4 50805370 50805563 -151522784 + AluSx SINE Alu 21 288 -22 187 257 57 71 chr4 50807130 50807200 -151521147 - L2 LINE L2 0 3272 3204 846 163 0 7 chr4 50807316 50807457 -151520890 - FLAM_C SINE Alu -3 140 1 219 300 29 0 chr4 50807527 50807597 -151520750 - L2 LINE L2 -282 2990 2919 482 299 68 103 chr4 50807807 50808245 -151520102 + L2 LINE L2 2846 3268 -4 529 318 45 9 chr4 50808691 50808911 -151519436 - MIR SINE MIR -31 231 4 567 309 55 9 chr4 50809888 50810108 -151518239 - MIR SINE MIR 0 262 33 1878 144 41 0 chr4 50810945 50811236 -151517111 - AluSx SINE Alu -9 303 1 935 162 7 7 chr4 50812346 50812500 -151515847 - FRAM SINE Alu -22 154 1 275 317 19 29 chr4 50813116 50813220 -151515127 + MIR3 SINE MIR 105 207 -1 4333 126 20 33 chr4 50813280 50813747 -151514600 + L1MA5 LINE L1 5546 6001 -299 2301 106 0 0 chr4 50813747 50814048 -151514299 + AluSg SINE Alu 2 302 -8 4333 126 20 33 chr4 50814048 50814345 -151514002 + L1MA5 LINE L1 6001 6300 0 282 309 32 21 chr4 50815505 50815599 -151512748 - MIR3 SINE MIR -28 180 86 273 304 31 46 chr4 50816070 50816232 -151512115 + MIR SINE MIR 45 203 -59 307 170 0 0 chr4 50816232 50816285 -151512062 + L1MB7 LINE L1 4873 4925 -1221 2274 228 64 57 chr4 50816289 50817251 -151511096 + L1MB7 LINE L1 5219 6173 -11 239 290 16 0 chr4 50817784 50817846 -151510501 - MIR3 SINE MIR -6 202 140 384 327 123 6 chr4 50818966 50819128 -151509219 - MIR3 SINE MIR -12 196 16 1030 155 0 44 chr4 50819149 50819355 -151508992 - MER20 DNA MER1_type -1 218 22 1911 148 0 20 chr4 50819567 50819870 -151508477 + AluJb SINE Alu 1 297 -15 21 0 0 0 chr4 50820106 50820127 -151508220 + AT_rich Low_complexity Low_complexity 1 21 0 724 312 51 4 chr4 50820472 50820706 -151507641 - MIR SINE MIR -15 247 3 258 234 0 0 chr4 50820897 50820944 -151507403 - L2 LINE L2 -18 3254 3208 437 270 9 9 chr4 50821005 50821116 -151507231 + MER5B DNA MER1_type 1 111 -67 306 235 43 61 chr4 50822875 50822990 -151505357 + MER103 DNA DNA 42 154 -12 497 277 43 25 chr4 50825152 50825434 -151502913 + L1ME4a LINE L1 5575 5861 -260 330 209 82 36 chr4 50825505 50825615 -151502732 + L1ME4a LINE L1 6007 6121 0 279 54 0 0 chr4 50825709 50825746 -151502601 + (TG)n Simple_repeat Simple_repeat 2 38 0 249 304 49 39 chr4 50825888 50825990 -151502357 + L2 LINE L2 3153 3255 -17 525 240 25 0 chr4 50827629 50827750 -151500597 - L2 LINE L2 -1 3312 3189 2135 128 3 13 chr4 50828681 50828994 -151499353 + AluSx SINE Alu 1 310 -2 25 31 0 0 chr4 50829289 50829321 -151499026 + AT_rich Low_complexity Low_complexity 1 32 0 1082 271 70 64 chr4 50829344 50829950 -151498397 - L2 LINE L2 -81 3232 2619 1935 176 21 0 chr4 50830000 50830340 -151498007 + MER7A DNA MER2_type 2 346 0 472 240 34 48 chr4 50830725 50830871 -151497476 + L2 LINE L2 3170 3313 0 219 150 25 0 chr4 50832574 50832614 -151495733 + GA-rich Low_complexity Low_complexity 1 41 0 1086 31 0 0 chr4 50833692 50833822 -151494525 - L1PA7 LINE L1 0 6154 6025 297 252 145 30 chr4 50834310 50834441 -151493906 + MIR SINE MIR 72 217 -45 293 343 9 9 chr4 50836115 50836223 -151492124 + L2 LINE L2 3192 3299 -14 364 291 94 8 chr4 50838776 50838893 -151489454 - MIR SINE MIR -128 134 8 901 211 38 37 chr4 50838903 50839361 -151488986 - MLT1D LTR MaLR -1 504 1 1838 157 7 0 chr4 50840044 50840364 -151487983 - AluJb SINE Alu 0 322 1 4945 211 30 48 chr4 50840418 50841799 -151486548 - MER45R DNA AcHobo -224 1357 1 589 314 92 20 chr4 50842022 50842468 -151485879 + MLT1J LTR MaLR 1 478 -33 331 268 9 45 chr4 50842830 50842942 -151485405 + MIR SINE MIR 155 262 0 285 190 13 25 chr4 50842965 50843044 -151485303 + (TATAA)n Simple_repeat Simple_repeat 2 79 0 1827 171 0 0 chr4 50843063 50843355 -151484992 - AluJb SINE Alu -20 292 1 22 35 0 0 chr4 50844550 50844579 -151483768 + AT_rich Low_complexity Low_complexity 1 29 0 292 313 181 26 chr4 50844785 50845012 -151483335 + MIR SINE MIR 1 262 0 427 309 28 39 chr4 50845137 50845318 -151483029 - MIR3 SINE MIR 0 208 30 1138 218 18 0 chr4 50845333 50845553 -151482794 - MER58A DNA MER1_type 0 224 1 1765 140 32 7 chr4 50846096 50846381 -151481966 + AluSx SINE Alu 1 292 -20 558 308 138 10 chr4 50846503 50846792 -151481555 + L3b LINE CR1 1242 1567 -16 499 271 35 0 chr4 50849220 50849364 -151478983 + MIR SINE MIR 114 262 0 268 346 11 50 chr4 50849765 50849947 -151478400 + L2 LINE L2 2119 2293 -1021 474 233 83 0 chr4 50850116 50850236 -151478111 + L2 LINE L2 3184 3313 0 662 282 20 40 chr4 50851730 50851824 -151476523 + MIR SINE MIR 50 144 -118 1161 203 53 77 chr4 50851824 50852003 -151476344 - MLT1A2 LTR MaLR 0 374 192 183 42 0 0 chr4 50852003 50852027 -151476320 + (GA)n Simple_repeat Simple_repeat 2 25 0 1161 203 53 77 chr4 50852027 50852108 -151476239 - MLT1A2 LTR MaLR -182 192 111 2347 103 3 0 chr4 50852108 50852409 -151475938 - AluSx SINE Alu -10 302 1 1161 203 53 77 chr4 50852409 50852526 -151475821 - MLT1A2 LTR MaLR -263 111 5 662 282 20 40 chr4 50852526 50852633 -151475714 + MIR SINE MIR 144 247 -15 737 298 56 10 chr4 50853058 50853360 -151474987 + Charlie2b DNA MER1_type 1 316 -2466 291 290 58 36 chr4 50853373 50853511 -151474836 + Charlie2b DNA MER1_type 523 663 -2119 365 392 65 36 chr4 50853597 50853903 -151474444 + L1ME1 LINE L1 34 348 -6192 782 251 104 62 chr4 50854412 50854486 -151473861 + L1ME1 LINE L1 1044 1113 -5427 2363 86 7 0 chr4 50854486 50854788 -151473559 + AluY SINE Alu 1 304 -7 782 251 104 62 chr4 50854788 50855308 -151473039 + L1ME1 LINE L1 1113 1642 -4898 564 199 36 24 chr4 50855380 50855546 -151472801 + L1ME1 LINE L1 4185 4352 -2188 499 233 38 14 chr4 50855564 50855767 -151472580 - MLT1E1 LTR MaLR -422 202 1 2480 223 94 45 chr4 50855767 50857467 -151470880 + L1ME1 LINE L1 4733 6539 -21 2954 224 116 19 chr4 50857467 50858722 -151469625 + Charlie2a DNA MER1_type 1485 2860 -2 187 331 70 28 chr4 50860194 50860316 -151468031 - L2 LINE L2 -364 2950 2823 255 261 63 72 chr4 50860316 50860373 -151467974 - MER91C DNA MER1_type 0 140 83 3378 182 72 28 chr4 50860373 50860961 -151467386 + LTR1B LTR ERV1 1 634 -192 2577 59 0 0 chr4 50860961 50861265 -151467082 + AluSg SINE Alu 1 304 -6 3378 182 72 28 chr4 50861265 50861467 -151466880 + LTR1B LTR ERV1 634 826 0 255 261 63 72 chr4 50861467 50861520 -151466827 - MER91C DNA MER1_type -57 83 31 1849 247 94 90 chr4 50861545 50862357 -151465990 - L2 LINE L2 -525 2789 1971 2408 96 0 0 chr4 50862357 50862658 -151465689 + AluSg SINE Alu 1 301 -9 1849 247 94 90 chr4 50862658 50862826 -151465521 - L2 LINE L2 -1343 1971 1805 266 329 118 16 chr4 50862827 50863082 -151465265 - L2 LINE L2 -1066 2248 1968 620 193 66 66 chr4 50863210 50863334 -151465013 + LTR16C LTR ERVL 228 354 -137 2186 108 7 3 chr4 50863334 50863631 -151464716 - AluSx SINE Alu -14 298 1 620 193 66 66 chr4 50863631 50863750 -151464597 + LTR16C LTR ERVL 353 471 -20 363 296 112 8 chr4 50863757 50863882 -151464465 + L2 LINE L2 3133 3270 -2 260 355 28 0 chr4 50863934 50864041 -151464306 - MIR SINE MIR -61 201 92 278 302 63 32 chr4 50864893 50865019 -151463328 + MIR SINE MIR 105 234 -28 1224 146 0 60 chr4 50865468 50865701 -151462646 - MER20 DNA MER1_type 0 219 1 2187 71 11 0 chr4 50916180 50916449 -151411898 + AluSq SINE Alu 26 297 -16 3879 100 11 89 chr4 50917667 50917788 -151410559 - L1MA2 LINE L1 -61 6243 6114 2146 62 0 0 chr4 50917788 50918070 -151410277 - AluY SINE Alu 0 319 38 3879 100 11 89 chr4 50918070 50918685 -151409662 - L1MA2 LINE L1 -190 6114 5564 887 174 14 68 chr4 50919767 50919986 -151408361 + MER3 DNA MER1_type 3 209 0 182 398 23 0 chr4 50920628 50920716 -151407631 - L2 LINE L2 -6 3266 3177 202 316 35 0 chr4 50921208 50921265 -151407082 - L2 LINE L2 -539 2775 2717 299 260 150 55 chr4 50922575 50922848 -151405499 - L1M4 LINE L1 -1956 4190 3892 380 290 107 22 chr4 50922853 50923451 -151404896 - L1M4 LINE L1 -2378 3768 3120 262 236 71 47 chr4 50923669 50923796 -151404551 - L1M4 LINE L1 -3330 2816 2687 1720 188 0 16 chr4 50923912 50924221 -151404126 - AluJo SINE Alu -3 309 6 242 133 100 0 chr4 50924342 50924402 -151403945 + L1MA4A LINE L1 5968 6033 -270 1116 109 11 6 chr4 50924403 50924578 -151403769 + L1MA4A LINE L1 6120 6295 -8 263 224 0 52 chr4 50925267 50925325 -151403022 - Tigger5 DNA MER2_type -2268 55 1 542 274 61 37 chr4 50925375 50925539 -151402808 - MIR SINE MIR -58 204 37 23 0 0 0 chr4 50925891 50925914 -151402433 + AT_rich Low_complexity Low_complexity 1 23 0 235 158 18 88 chr4 50926180 50926237 -151402110 - MLT1J2 LTR MaLR -299 151 99 772 211 101 101 chr4 50927066 50927483 -151400864 + L1ME LINE L1 5384 5800 -362 459 250 118 7 chr4 50928283 50928435 -151399912 - MIR SINE MIR -4 258 90 2230 123 0 3 chr4 50928506 50928815 -151399532 + AluSg SINE Alu 1 308 -2 1234 224 86 17 chr4 50928817 50929178 -151399169 + L1MA8 LINE L1 5884 6269 -22 535 253 15 45 chr4 50929552 50929750 -151398597 + AluSq SINE Alu 107 298 -15 1802 161 94 11 chr4 50929765 50930137 -151398210 + L1MA8 LINE L1 5884 6286 -5 243 314 124 22 chr4 50930398 50930535 -151397812 - L2 LINE L2 0 3272 3122 705 222 20 66 chr4 50930621 50930752 -151397595 + MER5A DNA MER1_type 1 122 -67 2273 80 0 26 chr4 50930752 50931054 -151397293 - AluSq SINE Alu -19 294 1 705 222 20 66 chr4 50931054 50931120 -151397227 + MER5A DNA MER1_type 122 189 0 206 231 0 0 chr4 50932396 50932435 -151395912 + (CA)n Simple_repeat Simple_repeat 1 39 0 24 32 0 0 chr4 50933228 50933259 -151395088 + AT_rich Low_complexity Low_complexity 1 31 0 2000 163 0 0 chr4 50933356 50933656 -151394691 + AluSx SINE Alu 1 300 -12 1684 163 67 30 chr4 50934237 50934696 -151393651 + MER39 LTR ERV1 1 523 -184 390 225 0 0 chr4 50934829 50934918 -151393429 + L1ME3A LINE L1 6038 6126 -44 1759 170 10 10 chr4 50934923 50935223 -151393124 - AluJo SINE Alu -12 300 1 2149 115 0 0 chr4 50936548 50936843 -151391504 + AluSc SINE Alu 1 295 -14 1173 211 103 22 chr4 50937132 50937540 -151390807 + L1MC5 LINE L1 7300 7740 -221 436 272 175 10 chr4 50937566 50937772 -151390575 - L1M4 LINE L1 -2081 4065 3826 258 176 0 0 chr4 50938213 50938264 -151390083 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 2299 141 34 36 chr4 50938557 50938975 -151389372 + L1MC1 LINE L1 5819 6235 -98 1700 157 0 14 chr4 50939173 50939453 -151388894 - AluJo SINE Alu -24 288 13 10221 132 32 5 chr4 50940131 50941778 -151386569 + Tigger1 DNA MER2_type 1 1691 -727 2291 156 31 50 chr4 50942548 50942971 -151385376 + MER21A LTR ERV1 498 912 -19 1745 131 3 76 chr4 50943491 50943819 -151384528 + AluJb SINE Alu 1 304 -8 198 0 0 0 chr4 50943920 50943942 -151384405 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 2659 213 37 4 chr4 50944404 50944948 -151383399 + MER68 LTR ERV1 1 562 0 283 302 56 49 chr4 50945448 50945753 -151382594 + HAL1b LINE L1 339 645 -703 2480 70 0 13 chr4 50945816 50946131 -151382216 + AluY SINE Alu 1 311 0 8424 190 138 9 chr4 50946972 50948762 -151379585 + L1 LINE L1 7 2028 -5537 4978 174 6 1 chr4 50948760 50949703 -151378644 + L1 LINE L1 5838 6785 -780 * 271 315 194 29 chr4 50949803 50950082 -151378265 + L2 LINE L2 2447 2771 -543 187 333 100 8 chr4 50951005 50951125 -151377222 + L2 LINE L2 3141 3271 -1 207 305 91 46 chr4 50952493 50952690 -151375657 + L2 LINE L2 2338 2543 -771 187 303 61 50 chr4 50953282 50953381 -151374966 - L2 LINE L2 -69 3203 3104 1790 114 22 11 chr4 50953818 50954091 -151374256 - AluSg SINE Alu -4 306 31 2212 54 7 11 chr4 50956371 50956647 -151371700 + AluY SINE Alu 37 311 0 461 180 0 0 chr4 50956798 50956887 -151371460 + L1MC4 LINE L1 7182 7270 -772 2460 91 0 0 chr4 50957448 50957755 -151370592 + AluSg SINE Alu 1 307 -3 14464 106 67 5 chr4 50957775 50960050 -151368297 - Tigger1 DNA MER2_type -2 2416 1 1170 303 162 20 chr4 50961425 50962226 -151366121 - L2 LINE L2 -6 3307 2392 364 288 117 37 chr4 50962345 50962508 -151365839 + MIR3 SINE MIR 14 189 -19 23 68 0 0 chr4 50963049 50963093 -151365254 + AT_rich Low_complexity Low_complexity 1 44 0 26 0 0 0 chr4 50963355 50963381 -151364966 + AT_rich Low_complexity Low_complexity 1 26 0 3060 230 68 25 chr4 50964486 50965380 -151362967 + L1MC2 LINE L1 4272 5217 -929 1541 149 6 98 chr4 50965380 50965715 -151362632 + AluJb SINE Alu 1 304 -8 3060 230 68 25 chr4 50965715 50965835 -151362512 + L1MC2 LINE L1 5217 5330 -816 1064 206 9 9 chr4 50965842 50966070 -151362277 + Tigger1 DNA MER2_type 73 300 -2118 198 0 0 0 chr4 50966075 50966097 -151362250 + (A)n Simple_repeat Simple_repeat 1 22 0 886 129 94 0 chr4 50966132 50966302 -151362045 + L1MA5A LINE L1 5897 6082 -215 1134 193 9 9 chr4 50966518 50966746 -151361601 + Tigger1 DNA MER2_type 73 300 -2118 198 0 0 0 chr4 50966750 50966772 -151361575 + (A)n Simple_repeat Simple_repeat 1 22 0 698 194 94 0 chr4 50966808 50966978 -151361369 + L1MA5A LINE L1 5897 6082 -215 1067 120 51 51 chr4 50967070 50967287 -151361060 + L1MA5A LINE L1 6076 6292 -5 4539 157 24 16 chr4 50967287 50968152 -151360195 + L1MC2 LINE L1 5460 6331 -13 252 232 205 18 chr4 50968169 50968281 -151360066 + MLT1L LTR MaLR 171 303 -312 386 260 100 47 chr4 50968373 50968523 -151359824 + MLT1L LTR MaLR 389 546 -69 1606 267 37 12 chr4 50968531 50969093 -151359254 - L1M4 LINE L1 -1653 4493 3918 623 136 39 0 chr4 50969102 50969205 -151359142 + AluSg/x SINE Alu 197 303 -7 190 270 0 0 chr4 50969936 50969973 -151358374 - L2 LINE L2 -97 3175 3139 318 265 15 0 chr4 50970708 50970776 -151357571 + L2 LINE L2 3229 3297 -16 2137 109 7 0 chr4 50970786 50971134 -151357213 + AluSx SINE Alu 1 350 0 194 358 119 0 chr4 50971260 50971369 -151356978 + L2 LINE L2 3142 3263 -9 1302 173 104 12 chr4 50971994 50972408 -151355939 + Charlie1b DNA MER1_type 7 521 -2 282 333 124 46 chr4 50972592 50972745 -151355602 + MIR SINE MIR 47 211 -51 25 0 0 0 chr4 50973257 50973282 -151355065 + AT_rich Low_complexity Low_complexity 1 25 0 1636 203 7 0 chr4 50973324 50973634 -151354713 - AluJb SINE Alu 0 312 1 1297 101 0 6 chr4 50974003 50974172 -151354175 + AluSg/x SINE Alu 128 295 -17 4736 259 59 25 chr4 50974292 50976129 -151352218 + L1MEc LINE L1 37 1936 -4460 612 272 88 21 chr4 50977063 50977302 -151351045 - MIR SINE MIR -1 261 7 277 278 52 31 chr4 50977346 50977443 -151350904 + MIR3 SINE MIR 89 187 -21 266 225 25 25 chr4 50978408 50978488 -151349859 - L2 LINE L2 -73 3240 3161 189 0 0 0 chr4 50979050 50979071 -151349276 + (CACCT)n Simple_repeat Simple_repeat 3 23 0 292 286 105 9 chr4 50979245 50979350 -151348997 + MIR SINE MIR 122 236 -26 461 261 35 0 chr4 50979384 50979499 -151348848 - MIR SINE MIR -110 152 34 189 161 0 0 chr4 50979590 50979621 -151348726 - L2 LINE L2 -1 3271 3241 284 245 32 11 chr4 50979633 50979727 -151348620 + MLT1C LTR MaLR 17 112 -355 * 546 184 18 9 chr4 50979726 50979835 -151348512 + MLT1C LTR MaLR 357 466 -1 522 243 61 80 chr4 50979836 50980099 -151348248 - L2 LINE L2 -27 3286 3029 508 310 149 30 chr4 50981591 50982174 -151346173 + L2 LINE L2 2651 3313 0 2067 111 0 84 chr4 50982617 50982949 -151345398 + AluSx SINE Alu 1 304 -8 10260 29 1 0 chr4 50983005 50985016 -151343331 + L1PA4 LINE L1 4141 6167 0 2287 75 0 0 chr4 50986538 50986846 -151341501 + AluY SINE Alu 1 308 0 1102 209 118 29 chr4 50987661 50987976 -151340371 + MER2 DNA MER2_type 1 343 -1 322 322 116 0 chr4 50990666 50990787 -151337560 + MIR SINE MIR 20 154 -108 4971 180 23 51 chr4 50990878 50992587 -151335760 - L1MA10 LINE L1 0 6334 4672 659 283 37 0 chr4 50992696 50992887 -151335460 - MER3 DNA MER1_type -10 199 2 1871 134 37 7 chr4 50992951 50993249 -151335098 + AluSx SINE Alu 6 312 0 843 164 119 10 chr4 50993761 50993962 -151334385 - MLT1C LTR MaLR -244 223 1 302 260 171 32 chr4 50995066 50995189 -151333158 - L2 LINE L2 0 3313 3174 278 336 35 0 chr4 50995735 50995848 -151332499 + MIR3 SINE MIR 85 201 -7 1416 177 118 30 chr4 50995951 50996324 -151332023 - MER21B LTR ERV1 -83 848 415 1124 219 60 17 chr4 50996322 50996496 -151331851 - MER33 DNA MER1_type -2270 315 121 * 2707 39 0 0 chr4 50996496 50996805 -151331542 - AluY SINE Alu -2 309 1 1124 219 60 17 chr4 50996805 50996932 -151331415 - MER33 DNA MER1_type -2464 121 1 866 188 41 51 chr4 50996944 50997141 -151331206 + MLT1D LTR MaLR 1 195 -310 * 1175 249 57 74 chr4 50997127 50997532 -151330815 - MER21B LTR ERV1 -454 409 12 23 33 0 0 chr4 50997962 50997992 -151330355 + AT_rich Low_complexity Low_complexity 1 30 0 388 293 70 25 chr4 50998168 50998325 -151330022 + MIR SINE MIR 49 212 -50 1400 208 39 3 chr4 50998558 50998870 -151329477 - MER33 DNA MER1_type -1 323 1 2333 206 43 6 chr4 50998893 50999363 -151328984 + MLT1D LTR MaLR 12 498 -7 2000 141 3 10 chr4 50999679 50999984 -151328363 + AluSx SINE Alu 1 303 -9 730 248 19 12 chr4 51000163 51000324 -151328023 - MER5A DNA MER1_type 0 189 28 831 137 0 15 chr4 51001064 51001195 -151327152 + FLAM_C SINE Alu 5 133 0 2272 214 43 41 chr4 51001937 51002568 -151325779 + L1MC4 LINE L1 6459 7090 -952 2382 74 3 0 chr4 51002569 51002865 -151325482 + AluSc SINE Alu 1 297 -12 1393 249 206 11 chr4 51002867 51003421 -151324926 + L1MC4 LINE L1 7239 7900 -142 25 65 0 0 chr4 51004180 51004226 -151324121 + AT_rich Low_complexity Low_complexity 1 46 0 31 68 0 0 chr4 51004273 51004332 -151324015 + AT_rich Low_complexity Low_complexity 1 59 0 2175 122 0 0 chr4 51004428 51004723 -151323624 - AluSg SINE Alu -15 295 1 229 363 50 0 chr4 51004864 51004944 -151323403 + L2 LINE L2 3141 3224 -48 504 274 160 87 chr4 51004949 51005537 -151322810 - L1MEd LINE L1 -5390 729 99 1832 172 7 7 chr4 51006781 51007089 -151321258 - AluJb SINE Alu -4 308 1 180 326 61 45 chr4 51009689 51009821 -151318526 - MIR3 SINE MIR -62 146 13 1745 231 14 3 chr4 51011562 51011921 -151316426 + MER119 DNA MER1_type 5 367 -216 230 310 11 46 chr4 51012054 51012141 -151316206 - L2 LINE L2 0 3313 3230 180 0 0 0 chr4 51012359 51012379 -151315968 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1555 193 0 25 chr4 51012384 51012669 -151315678 - AluJo SINE Alu -34 278 1 950 250 18 0 chr4 51012935 51013155 -151315192 - MER58A DNA MER1_type 0 224 1 327 106 0 0 chr4 51013220 51013267 -151315080 + AluJb SINE Alu 1 47 -261 353 206 0 0 chr4 51013304 51013372 -151314975 + 7SK RNA RNA 126 193 0 298 240 20 40 chr4 51013701 51013801 -151314546 - L2 LINE L2 -620 2694 2597 * 354 296 93 0 chr4 51013799 51013907 -151314440 + L2 LINE L2 3173 3290 -23 * 476 285 258 38 chr4 51013901 51014270 -151314077 - L2 LINE L2 -890 2424 1975 1587 154 26 22 chr4 51014437 51014768 -151313579 + AluJb SINE Alu 38 369 0 594 95 0 0 chr4 51015179 51015263 -151313084 + AluSg SINE Alu 1 84 -226 357 213 79 11 chr4 51015386 51015548 -151312799 - LTR24B LTR ERV1 -416 160 1 1012 244 58 13 chr4 51016002 51016227 -151312120 - MIR SINE MIR -10 252 18 2188 124 3 0 chr4 51016291 51016598 -151311749 + AluSq SINE Alu 1 308 -5 433 230 44 0 chr4 51016968 51017081 -151311266 - MIR SINE MIR 0 262 145 30545 92 13 9 chr4 51017088 51023152 -151305195 - L1PA6 LINE L1 -4 6465 387 528 99 0 0 chr4 51023498 51023569 -151304778 - L1PA6 LINE L1 -6374 87 17 236 258 48 16 chr4 51023605 51023667 -151304680 - MIR SINE MIR -190 72 9 4907 155 15 34 chr4 51023965 51024845 -151303502 + L1PB3 LINE L1 4450 5302 -852 1915 153 0 13 chr4 51024845 51025146 -151303201 + AluSx SINE Alu 1 297 -15 4907 155 15 34 chr4 51025146 51025983 -151302364 + L1PB3 LINE L1 5302 6153 -1 29 0 0 0 chr4 51026099 51026128 -151302219 + AT_rich Low_complexity Low_complexity 1 29 0 1177 211 45 27 chr4 51026130 51026467 -151301880 + L1ME LINE L1 5454 5796 -366 611 157 0 0 chr4 51026479 51026581 -151301766 - MER8 DNA MER2_type -137 102 1 326 259 88 20 chr4 51026702 51026849 -151301498 + LTR41 LTR ERVL 1 157 -616 1139 325 124 4 chr4 51028457 51029037 -151299310 - L2 LINE L2 0 3313 2652 23 33 0 0 chr4 51029149 51029179 -151299168 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr4 51029711 51029733 -151298614 + (A)n Simple_repeat Simple_repeat 1 22 0 654 167 96 45 chr4 51030298 51030496 -151297851 + MER3 DNA MER1_type 1 208 -1 2122 129 3 3 chr4 51030780 51031082 -151297265 - AluSx SINE Alu -10 302 1 25 65 0 0 chr4 51031755 51031801 -151296546 + AT_rich Low_complexity Low_complexity 1 46 0 238 370 43 22 chr4 51032242 51032380 -151295967 + MIR3 SINE MIR 5 145 -63 2092 128 3 13 chr4 51032472 51032785 -151295562 + AluSq SINE Alu 1 310 -3 229 167 0 21 chr4 51032831 51032879 -151295468 - MER69 DNA AcHobo -2478 48 2 1681 142 32 14 chr4 51033448 51033730 -151294617 + AluSq SINE Alu 1 287 -26 26 50 0 0 chr4 51034154 51034194 -151294153 + AT_rich Low_complexity Low_complexity 1 40 0 472 321 42 30 chr4 51034678 51034915 -151293432 - LTR16C LTR ERVL -95 396 157 335 194 291 52 chr4 51036514 51036648 -151291699 - MIR SINE MIR -9 253 88 25 0 0 0 chr4 51037100 51037125 -151291222 + AT_rich Low_complexity Low_complexity 1 25 0 301 291 21 50 chr4 51037415 51037556 -151290791 - L2 LINE L2 -582 2732 2596 * 386 209 93 54 chr4 51037553 51037682 -151290665 + MIR SINE MIR 86 219 -43 1582 193 35 14 chr4 51038721 51039011 -151289336 + AluJo SINE Alu 1 296 -16 2516 65 0 0 chr4 51039249 51039556 -151288791 + AluY SINE Alu 1 307 -4 679 296 45 28 chr4 51039632 51039879 -151288468 - MIR SINE MIR -10 252 2 326 271 33 36 chr4 51039969 51040080 -151288267 + MIR SINE MIR 29 139 -69 2369 93 0 13 chr4 51040223 51040536 -151287811 - AluSx SINE Alu -3 309 1 22 56 0 0 chr4 51040587 51040623 -151287724 + AT_rich Low_complexity Low_complexity 1 36 0 850 180 6 37 chr4 51040773 51040934 -151287413 + FRAM SINE Alu 1 156 -10 25 0 0 0 chr4 51041404 51041429 -151286918 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr4 51041445 51041473 -151286874 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 51041492 51041517 -151286830 + AT_rich Low_complexity Low_complexity 1 25 0 2292 86 3 0 chr4 51041521 51041811 -151286536 + AluSx SINE Alu 1 291 -21 2455 69 3 0 chr4 51041811 51042114 -151286233 + AluY SINE Alu 1 304 -7 702 176 20 20 chr4 51044100 51044248 -151284099 - LTR24 LTR ERV1 -55 412 265 1637 288 170 6 chr4 51044376 51045075 -151283272 - L2 LINE L2 -999 2315 1502 216 0 0 0 chr4 51045810 51045834 -151282513 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 226 213 88 75 chr4 51046676 51046756 -151281591 + MIR SINE MIR 34 114 -148 2152 117 0 10 chr4 51047126 51047424 -151280923 + AluSx SINE Alu 1 295 -17 806 161 12 48 chr4 51047426 51047594 -151280753 + AluSc SINE Alu 133 294 -15 237 188 14 14 chr4 51047595 51047664 -151280683 + AluS SINE Alu 3 71 -229 281 248 64 89 chr4 51047861 51048018 -151280329 - MIR SINE MIR -66 196 44 433 209 9 0 chr4 51048046 51048156 -151280191 + MER53 DNA DNA 79 189 0 2134 133 0 9 chr4 51048431 51048746 -151279601 + AluSx SINE Alu 1 312 0 279 0 0 0 chr4 51048746 51048761 -151279586 + (CA)n Simple_repeat Simple_repeat 1 46 0 279 0 0 0 chr4 51048761 51048792 -151279555 + (CA)n Simple_repeat Simple_repeat 2 32 0 581 324 55 17 chr4 51049068 51049306 -151279041 + MIR SINE MIR 1 247 -15 461 263 53 9 chr4 51049926 51050040 -151278307 + MIR SINE MIR 76 194 -68 1945 128 39 0 chr4 51050235 51050517 -151277830 + AluSx SINE Alu 2 294 -18 244 226 234 8 chr4 51050727 51050851 -151277496 - L2 LINE L2 -3 3310 3159 336 24 0 0 chr4 51051079 51051120 -151277227 + (TTGTG)n Simple_repeat Simple_repeat 4 44 0 282 350 25 104 chr4 51051507 51051670 -151276677 + L2 LINE L2 3117 3266 -6 * 1145 280 95 26 chr4 51051636 51052090 -151276257 - L2 LINE L2 -2 3311 2827 994 274 7 24 chr4 51052101 51052397 -151275950 - L2 LINE L2 -674 2640 2350 24 85 0 0 chr4 51052736 51052795 -151275552 + AT_rich Low_complexity Low_complexity 1 59 0 482 129 0 0 chr4 51052969 51053039 -151275308 + MER8 DNA MER2_type 169 238 -1 237 337 0 33 chr4 51053165 51053257 -151275090 + MIR SINE MIR 15 103 -159 22 35 0 0 chr4 51053619 51053648 -151274699 + AT_rich Low_complexity Low_complexity 1 29 0 1149 117 5 10 chr4 51053753 51053949 -151274398 - L1PB1 LINE L1 0 6867 6673 3491 127 71 30 chr4 51053949 51054937 -151273410 + MER11A LTR ERVK 4 1264 -2 14174 188 35 4 chr4 51054941 51056757 -151271590 - L1PB1 LINE L1 -188 6679 4920 248 0 31 0 chr4 51056757 51056789 -151271558 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 14174 188 35 4 chr4 51056789 51060123 -151268224 - L1PB1 LINE L1 -1947 4920 1392 707 246 5 5 chr4 51060121 51060312 -151268035 - L1PB1 LINE L1 -6667 196 6 * 310 305 59 66 chr4 51060431 51060687 -151267660 + MIR SINE MIR 9 262 0 1448 136 14 14 chr4 51060869 51061090 -151267257 + AluSx SINE Alu 1 221 -91 278 197 0 16 chr4 51061429 51061490 -151266857 - L2 LINE L2 0 3313 3254 1900 162 0 0 chr4 51061721 51062024 -151266323 - AluJb SINE Alu -9 303 1 1019 189 12 0 chr4 51062529 51062698 -151265649 + AluJo SINE Alu 126 296 -16 1833 130 0 0 chr4 51062936 51063205 -151265142 + AluY SINE Alu 1 269 -42 7159 64 7 1 chr4 51063951 51065095 -151263252 + L1P2 LINE L1 4429 5575 -579 362 238 88 39 chr4 51065400 51065581 -151262766 + LTR33 LTR ERVL 328 517 -4 215 366 28 7 chr4 51065597 51065739 -151262608 + L2 LINE L2 3154 3298 -15 1054 164 0 11 chr4 51065823 51066006 -151262341 + AluSx SINE Alu 1 181 -131 1647 168 0 14 chr4 51066565 51066845 -151261502 + AluJo SINE Alu 13 288 -24 2161 141 34 36 chr4 51067043 51067461 -151260886 - L1MC1 LINE L1 -98 6235 5819 452 250 0 19 chr4 51069131 51069235 -151259112 - AluJ/FLAM SINE Alu -210 102 1 1276 107 0 6 chr4 51069604 51069773 -151258574 + AluSg/x SINE Alu 126 293 -17 1154 291 55 23 chr4 51069893 51070423 -151257924 + L1MEc LINE L1 37 583 -5813 5510 136 35 33 chr4 51070710 51071458 -151256889 + MER41-int LTR ERV1 4405 4472 -651 2056 111 4 4 chr4 51071458 51071769 -151256578 + AluSg SINE Alu 1 311 0 5510 136 35 33 chr4 51071769 51071935 -151256412 + MER41-int LTR ERV1 4472 4636 -487 2059 204 59 43 chr4 51072066 51072595 -151255752 - L1P3 LINE L1 -5538 923 387 611 69 0 0 chr4 51072989 51073061 -151255286 - L1P3 LINE L1 -6373 88 17 239 258 48 16 chr4 51073097 51073159 -151255188 - MIR SINE MIR -190 72 9 349 286 0 0 chr4 51073453 51073558 -151254789 + L1P LINE L1 4446 4550 -1596 212 298 0 0 chr4 51073617 51073711 -151254636 + C-rich Low_complexity Low_complexity 1 94 0 189 0 0 0 chr4 51074306 51074327 -151254020 + (T)n Simple_repeat Simple_repeat 1 21 0 528 150 0 0 chr4 51074327 51074407 -151253940 + Charlie1 DNA MER1_type 2442 2521 -240 1482 121 0 22 chr4 51074520 51074744 -151253603 + MER1B DNA MER1_type 3 221 -76 25 0 0 0 chr4 51074744 51074769 -151253578 + AT_rich Low_complexity Low_complexity 1 25 0 4747 162 32 9 chr4 51075272 51076116 -151252231 + Tigger1 DNA MER2_type 829 1691 -727 7343 40 0 7 chr4 51076555 51077879 -151250468 - L1HS LINE L1 -82 6073 4762 2101 122 25 0 chr4 51080025 51080337 -151248010 - LTR28 LTR ERV1 -712 802 8 292 219 16 16 chr4 51080409 51080473 -151247874 + MIR3 SINE MIR 117 180 -28 25 51 0 0 chr4 51080741 51080780 -151247567 + AT_rich Low_complexity Low_complexity 1 39 0 28 0 0 0 chr4 51080933 51080961 -151247386 + AT_rich Low_complexity Low_complexity 1 28 0 270 188 0 29 chr4 51082062 51082131 -151246216 + GA-rich Low_complexity Low_complexity 3 69 0 272 188 62 50 chr4 51082408 51082488 -151245859 + MER117 DNA MER1_type 64 144 -53 460 182 273 0 chr4 51082569 51082690 -151245657 - MER5A DNA MER1_type -3 186 33 25 0 0 0 chr4 51082840 51082865 -151245482 + AT_rich Low_complexity Low_complexity 1 25 0 180 158 0 0 chr4 51082897 51082935 -151245412 + (TA)n Simple_repeat Simple_repeat 2 39 0 934 169 19 0 chr4 51085166 51085326 -151243021 + AluJb SINE Alu 150 312 0 350 219 73 37 chr4 51085423 51085505 -151242842 + MER21B LTR ERV1 1 85 -778 2225 106 3 0 chr4 51085520 51085813 -151242534 - AluSg SINE Alu -16 294 1 336 256 24 0 chr4 51085835 51085917 -151242430 + MER21B LTR ERV1 20 103 -760 701 209 45 0 chr4 51085918 51086052 -151242295 + FLAM_C SINE Alu 2 141 -2 280 127 48 0 chr4 51086441 51086504 -151241843 + GA-rich Low_complexity Low_complexity 3 68 0 2371 239 93 26 chr4 51086507 51087192 -151241155 + MER21B LTR ERV1 85 815 -48 432 167 104 0 chr4 51088543 51088639 -151239708 + L1MA4A LINE L1 6015 6120 -183 521 145 16 48 chr4 51088640 51088764 -151239583 + L1MA4A LINE L1 6183 6302 -1 1316 130 0 0 chr4 51089026 51089218 -151239129 + L1PA14 LINE L1 5968 6159 -2 23 0 0 0 chr4 51089440 51089463 -151238884 + AT_rich Low_complexity Low_complexity 1 23 0 528 150 0 0 chr4 51089899 51089979 -151238368 + Charlie1 DNA MER1_type 2442 2521 -240 1482 121 0 22 chr4 51090092 51090316 -151238031 + MER1B DNA MER1_type 3 221 -76 25 0 0 0 chr4 51090316 51090341 -151238006 + AT_rich Low_complexity Low_complexity 1 25 0 250 164 0 30 chr4 51090704 51090771 -151237576 + T-rich Low_complexity Low_complexity 5 69 0 203 191 0 24 chr4 51090883 51090925 -151237422 + T-rich Low_complexity Low_complexity 2 42 0 26 0 0 0 chr4 51091247 51091273 -151237074 + AT_rich Low_complexity Low_complexity 1 26 0 197 378 42 21 chr4 51091651 51091794 -151236553 - L2 LINE L2 -211 3061 2916 2589 312 52 37 chr4 51091893 51092603 -151235744 + HERV16 LTR ERVL 941 1676 -3320 918 131 0 0 chr4 51092603 51092725 -151235622 + FLAM_C SINE Alu 5 126 -7 2589 312 52 37 chr4 51092725 51093198 -151235149 + HERV16 LTR ERVL 1676 2141 -2855 396 297 20 27 chr4 51093273 51093421 -151234926 + HERV16 LTR ERVL 2330 2476 -2520 265 241 0 0 chr4 51093435 51093489 -151234858 + HERV16 LTR ERVL 2133 2186 -3578 1049 298 61 41 chr4 51093626 51094116 -151234231 + HERV16 LTR ERVL 2262 2761 -2235 294 29 0 0 chr4 51094289 51094324 -151234023 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1892 123 7 14 chr4 51094326 51094602 -151233745 - AluSx SINE Alu -35 277 4 604 256 64 95 chr4 51095149 51095370 -151232977 + HERV16 LTR ERVL 3372 3510 -1486 1911 139 19 13 chr4 51095370 51095680 -151232667 + AluSx SINE Alu 1 312 0 604 256 64 95 chr4 51095680 51095855 -151232492 + HERV16 LTR ERVL 3510 3689 -1307 1074 336 65 30 chr4 51095888 51096902 -151231445 + HERV16 LTR ERVL 4263 5327 -437 709 298 67 47 chr4 51097126 51097512 -151230835 + LTR16A LTR ERVL 57 450 0 2656 106 3 3 chr4 51098102 51098459 -151229888 + THE1B LTR MaLR 1 357 -7 200 194 0 0 chr4 51098624 51098660 -151229687 + A-rich Low_complexity Low_complexity 4 39 0 976 78 78 0 chr4 51099164 51099292 -151229055 - MER85 DNA T2_type 0 139 2 2054 125 0 17 chr4 51100058 51100389 -151227958 + AluSx SINE Alu 1 326 0 2788 123 0 3 chr4 51100757 51101122 -151227225 - THE1B LTR MaLR 0 364 1 1728 202 156 90 chr4 51101800 51102536 -151225811 + LTR1 LTR ERV1 1 785 0 2373 103 0 0 chr4 51103149 51103461 -151224886 - AluSx SINE Alu 0 312 1 181 239 163 22 chr4 51103528 51103620 -151224727 + L2 LINE L2 2869 2973 -299 224 255 20 0 chr4 51103818 51103869 -151224478 + L2 LINE L2 3262 3313 0 241 167 0 30 chr4 51104665 51104731 -151223616 + GA-rich Low_complexity Low_complexity 1 64 0 2295 118 0 6 chr4 51104900 51105214 -151223133 - AluSx SINE Alu 0 312 1 1593 101 37 0 chr4 51105506 51105724 -151222623 - AluY SINE Alu -85 226 1 292 358 0 96 chr4 51105763 51105880 -151222467 + L2 LINE L2 2934 3014 -258 2108 109 14 0 chr4 51105880 51106173 -151222174 + AluSq SINE Alu 1 297 -16 292 358 0 96 chr4 51106173 51106315 -151222032 + L2 LINE L2 3014 3168 -104 1353 219 69 33 chr4 51106967 51107159 -151221188 + L1ME LINE L1 4942 5126 -1038 1936 116 21 7 chr4 51107159 51107443 -151220904 - AluSx SINE Alu -24 288 1 1353 219 69 33 chr4 51107443 51107925 -151220422 + L1ME LINE L1 5126 5653 -511 742 238 14 9 chr4 51107921 51108135 -151220212 + L1ME2 LINE L1 4985 5199 -947 * 1831 192 84 17 chr4 51108126 51108600 -151219747 + L1ME2 LINE L1 5656 6161 -3 719 135 9 0 chr4 51108635 51108746 -151219601 + MSTC LTR MaLR 317 428 0 1578 173 56 3 chr4 51108998 51109282 -151219065 + AluSx SINE Alu 1 299 -13 617 159 28 0 chr4 51109284 51109391 -151218956 + MER3 DNA MER1_type 53 162 -47 895 157 130 58 chr4 51109401 51109601 -151218746 + MER3 DNA MER1_type 2247 2472 -152 2418 78 0 3 chr4 51109601 51109897 -151218450 + AluSc SINE Alu 1 295 -14 895 157 130 58 chr4 51109897 51109957 -151218390 + MER3 DNA MER1_type 2472 2526 -98 181 262 71 0 chr4 51110007 51110049 -151218298 - L2 LINE L2 -4 3268 3224 * 430 299 107 47 chr4 51110019 51110253 -151218094 - MIR SINE MIR -13 249 2 22 0 0 0 chr4 51110302 51110324 -151218023 + AT_rich Low_complexity Low_complexity 1 22 0 1788 181 24 0 chr4 51110500 51110788 -151217559 - AluJo SINE Alu -17 295 1 607 330 31 18 chr4 51110866 51111090 -151217257 - L3 LINE CR1 -3 1574 1348 386 214 124 0 chr4 51111075 51111164 -151217183 + MIR SINE MIR 151 250 -12 * 26 30 0 0 chr4 51111579 51111612 -151216735 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr4 51112039 51112066 -151216281 + AT_rich Low_complexity Low_complexity 1 27 0 264 298 15 61 chr4 51112088 51112219 -151216128 - L1P LINE L1 -1140 5006 4882 229 283 110 62 chr4 51112711 51112964 -151215383 - L1 LINE L1 -2083 4063 3787 2289 113 0 0 chr4 51112964 51113264 -151215083 - AluSx SINE Alu -12 300 1 229 283 110 62 chr4 51113264 51113364 -151214983 - L1 LINE L1 -2359 3787 3693 469 274 111 13 chr4 51113722 51113875 -151214472 + MIR SINE MIR 1 168 -94 444 315 62 11 chr4 51113945 51114123 -151214224 - MER5A DNA MER1_type -1 188 2 1635 203 37 90 chr4 51114323 51114558 -151213789 + L1M4 LINE L1 3813 4059 -2087 2276 122 0 0 chr4 51114558 51114869 -151213478 + AluSx SINE Alu 1 311 -1 1635 203 37 90 chr4 51114869 51115224 -151213123 + L1M4 LINE L1 4059 4372 -1774 2296 100 0 0 chr4 51115235 51115526 -151212821 + AluY SINE Alu 2 292 -19 527 272 140 16 chr4 51115983 51116233 -151212114 - LTR33A LTR ERVL 0 523 243 2325 109 0 0 chr4 51116995 51117307 -151211040 - AluSx SINE Alu 0 312 1 190 366 28 7 chr4 51117391 51117533 -151210814 - L2 LINE L2 -15 3298 3154 511 216 88 39 chr4 51117549 51117730 -151210617 - LTR33 LTR ERVL -4 517 328 2119 111 7 3 chr4 51117920 51118209 -151210138 + AluSp SINE Alu 15 304 -9 787 104 4 2 chr4 51118411 51118652 -151209695 + AluSx SINE Alu 1 293 -19 272 26 0 26 chr4 51118706 51118744 -151209603 + (TG)n Simple_repeat Simple_repeat 2 38 0 2121 104 0 7 chr4 51119147 51119425 -151208922 + AluSx SINE Alu 1 276 -36 234 0 0 0 chr4 51119431 51119457 -151208890 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 678 320 58 53 chr4 51119629 51120254 -151208093 - L1MC4a LINE L1 -1889 5919 5292 230 214 0 54 chr4 51120251 51120307 -151208040 - L2 LINE L2 0 3313 3261 * 2161 97 7 32 chr4 51120604 51120913 -151207434 - AluSx SINE Alu -11 301 1 25 51 0 0 chr4 51121342 51121381 -151206966 + AT_rich Low_complexity Low_complexity 1 39 0 1038 121 0 0 chr4 51121448 51121589 -151206758 + AluJb SINE Alu 1 141 -171 584 14 14 0 chr4 51121606 51121679 -151206668 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 22 0 0 0 chr4 51121683 51121705 -151206642 + AT_rich Low_complexity Low_complexity 1 22 0 327 225 119 44 chr4 51121753 51121913 -151206434 + L1ME4a LINE L1 5943 6114 -7 290 78 74 65 chr4 51121975 51122052 -151206295 + L1MA9 LINE L1 6001 6078 -233 362 141 55 10 chr4 51122080 51122165 -151206182 + L1MA9 LINE L1 6001 6084 -207 262 274 75 47 chr4 51122371 51122477 -151205870 + MIR SINE MIR 46 154 -108 248 270 40 40 chr4 51123121 51123195 -151205152 + L2 LINE L2 3189 3262 -51 762 113 0 0 chr4 51123300 51123415 -151204932 + (TA)n Simple_repeat Simple_repeat 2 116 0 351 269 64 28 chr4 51123993 51124134 -151204213 - L2 LINE L2 -212 3060 2915 1893 156 46 46 chr4 51124154 51124544 -151203803 + MLT1B LTR MaLR 1 390 0 2449 77 3 0 chr4 51124883 51125180 -151203167 - AluSp SINE Alu -15 298 1 358 303 65 33 chr4 51125258 51125848 -151202499 - L1M4 LINE L1 -1500 4646 4039 2060 145 0 0 chr4 51126093 51126396 -151201951 + AluJb SINE Alu 1 303 -9 278 197 0 16 chr4 51126627 51126688 -151201659 + L2 LINE L2 3254 3313 0 1997 152 7 3 chr4 51127519 51127828 -151200519 - AluJb SINE Alu -2 310 1 250 351 43 0 chr4 51127891 51127985 -151200362 + MIR SINE MIR 51 148 -114 21 0 0 0 chr4 51128556 51128577 -151199770 + AT_rich Low_complexity Low_complexity 1 21 0 250 283 22 14 chr4 51129695 51129833 -151198514 - L1ME LINE L1 -240 5881 5743 2136 120 3 0 chr4 51129866 51130158 -151198189 - AluSx SINE Alu -19 293 1 1962 138 10 10 chr4 51130434 51130730 -151197617 + AluSx SINE Alu 1 296 -16 269 308 82 7 chr4 51130783 51130929 -151197418 - HAL1 LINE L1 -2225 282 126 1670 206 125 7 chr4 51130931 51131493 -151196854 - Zaphod DNA AcHobo 0 4031 3404 459 214 10 0 chr4 51131505 51131608 -151196739 - Tigger5 DNA MER2_type -1 2322 2219 249 218 0 0 chr4 51131601 51131656 -151196691 - Tigger5 DNA MER2_type -2268 55 1 * 536 314 33 20 chr4 51131805 51132108 -151196239 + L1MEc LINE L1 253 559 -5837 2054 139 3 7 chr4 51132154 51132456 -151195891 + AluSx SINE Alu 6 306 -6 503 239 0 0 chr4 51132523 51132632 -151195715 + Tigger7 DNA MER2_type 5 113 -620 * 1914 135 72 22 chr4 51132629 51132991 -151195356 + Tigger7 DNA MER2_type 2205 2584 -3 1429 257 80 66 chr4 51133011 51133246 -151195101 + L1MEc LINE L1 664 894 -5502 1970 137 3 7 chr4 51133246 51133531 -151194816 + AluSx SINE Alu 3 286 -26 1429 257 80 66 chr4 51133531 51134030 -151194317 + L1MEc LINE L1 894 1419 -4977 2239 96 7 0 chr4 51134030 51134323 -151194024 - AluSp SINE Alu -17 296 2 1429 257 80 66 chr4 51134323 51134627 -151193720 + L1MEc LINE L1 1419 1717 -4679 826 271 11 28 chr4 51134638 51134839 -151193508 + L1MEc LINE L1 2184 2378 -3837 2137 127 0 10 chr4 51134839 51135130 -151193217 + AluSx SINE Alu 1 288 -24 826 271 11 28 chr4 51135130 51135286 -151193061 + L1MEc LINE L1 2378 2535 -3680 2237 222 24 20 chr4 51135331 51135967 -151192380 + L1MEc LINE L1 2695 3332 -2883 2521 186 18 52 chr4 51136037 51136635 -151191712 - LTR8A LTR ERV1 -30 697 120 1637 131 3 77 chr4 51136635 51137008 -151191339 - MER4A LTR ERV1 0 664 261 512 182 0 10 chr4 51137008 51137107 -151191240 - MER4A LTR ERV1 -566 98 1 8289 55 7 0 chr4 51137122 51138122 -151190225 + LTR13 LTR ERVK 1 1007 0 15759 99 39 32 chr4 51138122 51138751 -151189596 - MER4A-int LTR ERV1 -2 6596 5973 2054 111 4 4 chr4 51138751 51139078 -151189269 - AluSg SINE Alu 0 327 1 15759 99 39 32 chr4 51139078 51140293 -151188054 - MER4A-int LTR ERV1 -625 5973 4725 2056 119 0 4 chr4 51140293 51140570 -151187777 - AluSx SINE Alu -23 289 14 15759 99 39 32 chr4 51140570 51141466 -151186881 - MER4A-int LTR ERV1 -1873 4725 3836 7012 101 148 108 chr4 51141464 51142839 -151185508 - MER4A-int LTR ERV1 -2917 3681 2363 * 2184 108 3 3 chr4 51142839 51143136 -151185211 + AluSg SINE Alu 1 297 -13 7012 101 148 108 chr4 51143136 51143177 -151185170 - MER4A-int LTR ERV1 -4235 2363 2325 2031 153 3 0 chr4 51143177 51143478 -151184869 + AluSp SINE Alu 1 302 -11 7012 101 148 108 chr4 51143478 51144110 -151184237 - MER4A-int LTR ERV1 -4273 2325 1720 6116 64 6 26 chr4 51144110 51144906 -151183441 - LTR17 LTR ERV1 0 780 1 7012 101 148 108 chr4 51144906 51145162 -151183185 - MER4A-int LTR ERV1 -4878 1720 504 4230 131 50 21 chr4 51145170 51145927 -151182420 - MER4E LTR ERV1 0 779 1 970 135 31 45 chr4 51145927 51146210 -151182137 - MER4A-int LTR ERV1 -5564 1034 687 3026 99 197 1 chr4 51146348 51146723 -151181624 - MER4A-int LTR ERV1 -5761 837 537 183 42 0 0 chr4 51146723 51146747 -151181600 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3026 99 197 1 chr4 51146747 51147045 -151181302 - MER4A-int LTR ERV1 -6061 537 1 1624 125 6 91 chr4 51147048 51147368 -151180979 - MER4A LTR ERV1 0 664 372 487 153 10 10 chr4 51147412 51147510 -151180837 - MER4A LTR ERV1 -566 98 1 397 143 194 0 chr4 51147517 51147615 -151180732 - LTR8A LTR ERV1 -609 118 2 945 274 21 0 chr4 51148324 51148561 -151179786 + MIR SINE MIR 16 257 -5 2393 41 0 20 chr4 51148673 51148968 -151179379 + AluY SINE Alu 1 289 -22 195 42 0 0 chr4 51148979 51149003 -151179344 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1752 145 35 14 chr4 51149391 51149674 -151178673 - AluJb SINE Alu -18 294 6 335 238 191 14 chr4 51149722 51149869 -151178478 + MIR SINE MIR 88 260 -2 21 0 0 0 chr4 51151154 51151175 -151177172 + GC_rich Low_complexity Low_complexity 1 21 0 287 164 0 15 chr4 51151610 51151677 -151176670 + (TA)n Simple_repeat Simple_repeat 1 66 0 371 292 76 60 chr4 51152575 51152760 -151175587 - L2 LINE L2 -167 3146 2959 1841 150 29 0 chr4 51152806 51153086 -151175261 - AluSx SINE Alu -14 298 11 198 147 0 0 chr4 51153269 51153303 -151175044 - L2 LINE L2 -245 3068 3035 541 326 22 11 chr4 51153424 51153602 -151174745 - L2 LINE L2 -452 2862 2683 436 233 133 7 chr4 51153797 51153947 -151174400 + L2 LINE L2 3144 3312 -1 282 326 96 59 chr4 51153932 51154171 -151174176 - L2 LINE L2 -405 2909 2662 * 36 0 0 0 chr4 51154717 51154753 -151173594 + AT_rich Low_complexity Low_complexity 1 36 0 371 248 24 0 chr4 51155071 51155165 -151173182 - MIR3 SINE MIR -36 172 75 262 215 25 13 chr4 51155233 51155312 -151173035 - MER116 DNA Mariner 0 80 1 293 306 58 23 chr4 51155312 51155485 -151172862 + L1ME LINE L1 5688 5866 -304 30 0 0 0 chr4 51155673 51155703 -151172644 + AT_rich Low_complexity Low_complexity 1 30 0 1376 170 0 18 chr4 51156568 51156791 -151171556 + AluJb SINE Alu 84 302 -10 773 154 37 0 chr4 51156857 51156993 -151171354 - FLAM_C SINE Alu -2 141 1 2094 90 17 21 chr4 51157752 51158040 -151170307 - AluSx SINE Alu -3 309 23 2005 150 7 7 chr4 51158057 51158363 -151169984 - AluJb SINE Alu -5 307 2 486 301 84 25 chr4 51158445 51158731 -151169616 - MER102a DNA MER1_type -25 305 3 878 170 0 7 chr4 51159499 51159646 -151168701 - THE1B LTR MaLR -218 146 1 1109 148 15 83 chr4 51160324 51160588 -151167759 + LTR1 LTR ERV1 1 246 -539 12139 31 0 0 chr4 51161063 51162598 -151165749 + L1P LINE L1 2938 4472 -1674 1250 158 26 48 chr4 51162763 51163086 -151165261 + AluSx SINE Alu 47 363 0 407 296 50 0 chr4 51163247 51163406 -151164941 + MLT1K LTR MaLR 137 303 -285 785 181 34 0 chr4 51163573 51163722 -151164625 - MER20 DNA MER1_type -7 212 59 258 299 0 13 chr4 51164213 51164290 -151164057 - Charlie4 DNA MER1_type -1 1960 1885 1018 188 12 0 chr4 51164290 51164460 -151163887 - AluJb SINE Alu -5 307 136 771 163 6 51 chr4 51164609 51164787 -151163560 - MLT1A2 LTR MaLR -204 170 1 403 282 149 11 chr4 51164820 51165001 -151163346 - MIR SINE MIR -3 259 54 450 145 46 76 chr4 51165321 51165444 -151162903 + MER53 DNA DNA 1 119 -70 1101 224 135 6 chr4 51165444 51165792 -151162555 + LTR52 LTR ERVL 2 394 -27 351 184 13 0 chr4 51165831 51165907 -151162440 + MER53 DNA DNA 113 189 0 493 244 154 39 chr4 51166350 51166506 -151161841 + MER5A DNA MER1_type 16 189 0 654 224 93 6 chr4 51166520 51166681 -151161666 - MER5B DNA MER1_type -3 175 1 431 184 87 135 chr4 51166689 51166874 -151161473 + MER5B DNA MER1_type 1 176 -2 234 0 0 0 chr4 51168025 51168051 -151160296 + (TTC)n Simple_repeat Simple_repeat 2 27 0 2169 105 0 0 chr4 51168061 51168346 -151160001 - AluSx SINE Alu -27 285 1 1090 285 43 61 chr4 51168723 51169214 -151159133 - L2 LINE L2 -6 3307 2826 2008 137 23 7 chr4 51169597 51169953 -151158394 + AluSx SINE Alu 1 361 0 280 287 23 0 chr4 51170114 51170201 -151158146 + MLT1K LTR MaLR 137 225 -363 279 286 32 24 chr4 51170322 51170448 -151157899 - LTR40b LTR ERVL -149 313 187 1230 205 11 8 chr4 51170448 51170711 -151157636 - L1PA16 LINE L1 -102 6064 5801 258 308 11 22 chr4 51171100 51171191 -151157156 + GA-rich Low_complexity Low_complexity 3 92 0 228 264 7 68 chr4 51172335 51172483 -151155864 + GA-rich Low_complexity Low_complexity 1 139 0 203 313 10 20 chr4 51172518 51172617 -151155730 + GA-rich Low_complexity Low_complexity 3 100 0 33 56 0 0 chr4 51174242 51174296 -151154051 + AT_rich Low_complexity Low_complexity 1 54 0 1789 120 45 3 chr4 51174355 51174664 -151153683 + L1MA5 LINE L1 5979 6300 0 16373 22 0 0 chr4 51175239 51178002 -151150345 + L1HS LINE L1 3380 6142 -13 347 313 195 29 chr4 51178102 51178415 -151149932 + L2 LINE L2 2949 3313 0 336 318 95 43 chr4 51178546 51178914 -151149433 + L1ME LINE L1 4640 5026 -1120 2408 81 3 0 chr4 51178914 51179211 -151149136 - AluSx SINE Alu -14 298 1 23 0 0 0 chr4 51179260 51179283 -151149064 + AT_rich Low_complexity Low_complexity 1 23 0 410 312 53 15 chr4 51179323 51179567 -151148780 + L1ME LINE L1 5178 5430 -740 5074 153 22 11 chr4 51180314 51181762 -151146585 + L1PB4 LINE L1 4682 6141 -15 29 28 0 0 chr4 51182423 51182459 -151145888 + AT_rich Low_complexity Low_complexity 1 36 0 2211 108 13 0 chr4 51183152 51183458 -151144889 - AluSx SINE Alu -2 310 1 22 0 0 0 chr4 51183783 51183805 -151144542 + AT_rich Low_complexity Low_complexity 1 22 0 2181 117 0 0 chr4 51183846 51184136 -151144211 - AluSq SINE Alu -23 290 1 201 279 164 0 chr4 51185325 51185386 -151142961 + MIR SINE MIR 81 151 -111 302 189 0 0 chr4 51185940 51185993 -151142354 + MIR SINE MIR 166 218 -44 213 39 0 0 chr4 51186014 51186040 -151142307 + (TAG)n Simple_repeat Simple_repeat 1 26 0 1472 118 41 0 chr4 51186288 51186509 -151141838 - MER30 DNA MER1_type 0 230 1 184 203 23 156 chr4 51187375 51187503 -151140844 + MIR SINE MIR 112 222 -40 1915 167 0 0 chr4 51188724 51189024 -151139323 + AluJb SINE Alu 1 300 -12 780 171 4 6 chr4 51190450 51190693 -151137654 + AluJo SINE Alu 9 288 -24 23 33 0 0 chr4 51190728 51190758 -151137589 + AT_rich Low_complexity Low_complexity 1 30 0 2093 117 10 0 chr4 51191143 51191434 -151136913 + AluSg SINE Alu 1 294 -16 183 295 66 0 chr4 51191775 51191836 -151136511 + MIR SINE MIR 184 248 -14 2084 96 14 4 chr4 51192343 51192623 -151135724 + AluSx SINE Alu 1 283 -29 1463 201 32 11 chr4 51193044 51193327 -151135020 + AluJo SINE Alu 1 289 -23 1986 108 0 72 chr4 51193339 51193671 -151134676 + AluSp SINE Alu 1 308 -5 189 0 0 0 chr4 51193671 51193692 -151134655 + (GA)n Simple_repeat Simple_repeat 2 22 0 4031 115 17 65 chr4 51193851 51194575 -151133772 - LTR8 LTR ERV1 -2 689 1 2228 106 0 0 chr4 51196080 51196372 -151131975 + AluSx SINE Alu 6 297 -15 637 205 8 8 chr4 51196413 51196530 -151131817 + MER5B DNA MER1_type 60 176 -2 23499 41 42 3 chr4 51196681 51199786 -151128561 - L1P LINE L1 -2906 3240 13 1044 166 56 123 chr4 51199786 51200232 -151128115 - Charlie4a DNA MER1_type -59 449 34 1029 172 106 5 chr4 51200262 51200460 -151127887 + MER20 DNA MER1_type 1 218 -1 1248 197 238 6 chr4 51201029 51201394 -151126953 + MER31B LTR ERV1 7 456 -10 17190 130 82 32 chr4 51201631 51205392 -151122955 + L1ME3A LINE L1 2059 6047 -123 1903 144 6 49 chr4 51205392 51205718 -151122629 - AluSx SINE Alu 0 312 1 17190 130 82 32 chr4 51205718 51205824 -151122523 + L1ME3A LINE L1 6047 6146 -24 2170 103 10 3 chr4 51206629 51206919 -151121428 - AluSx SINE Alu -20 292 1 1630 142 51 58 chr4 51207587 51207882 -151120465 - AluJb SINE Alu -19 293 1 1000 82 0 0 chr4 51209289 51209424 -151118923 - MER85 DNA T2_type -4 135 1 886 158 45 0 chr4 51209613 51209790 -151118557 - MER3 DNA MER1_type -22 187 3 619 186 145 8 chr4 51210579 51210703 -151117644 + AluJo SINE Alu 3 143 -169 2148 103 7 7 chr4 51210821 51211112 -151117235 - AluSg SINE Alu -19 291 1 2150 126 0 0 chr4 51212045 51212365 -151115982 - AluSx SINE Alu 0 320 1 2422 84 0 3 chr4 51212377 51212686 -151115661 - AluSx SINE Alu -4 308 1 643 90 0 0 chr4 51213512 51213601 -151114746 - AluSg/x SINE Alu -5 304 216 1962 120 4 0 chr4 51213601 51213868 -151114479 - AluSx SINE Alu -44 268 1 339 307 79 24 chr4 51214158 51214285 -151114062 - L2 LINE L2 0 3272 3139 1985 152 0 7 chr4 51214501 51214790 -151113557 - AluJo SINE Alu -23 289 3 1886 132 10 0 chr4 51216936 51217224 -151111123 + AluJb SINE Alu 1 291 -21 1831 183 0 0 chr4 51218202 51218492 -151109855 - AluSx SINE Alu -20 292 3 23 33 0 0 chr4 51218643 51218673 -151109674 + AT_rich Low_complexity Low_complexity 1 30 0 663 209 195 47 chr4 51219321 51219510 -151108837 - MIR SINE MIR -3 259 33 838 176 11 59 chr4 51219510 51219697 -151108650 - MER5B DNA MER1_type 0 178 1 663 209 195 47 chr4 51219697 51219722 -151108625 - MIR SINE MIR -229 33 13 374 232 0 0 chr4 51220397 51220466 -151107881 + L2 LINE L2 3231 3299 -14 188 200 20 0 chr4 51220476 51220526 -151107821 + GA-rich Low_complexity Low_complexity 1 51 0 4573 84 34 12 chr4 51220623 51221291 -151107056 + LTR8 LTR ERV1 1 683 -8 378 0 0 0 chr4 51222049 51222091 -151106256 + (CA)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr4 51222487 51222511 -151105836 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr4 51222926 51222962 -151105385 + AT_rich Low_complexity Low_complexity 1 36 0 1070 268 45 43 chr4 51222986 51223407 -151104940 + L2 LINE L2 2152 2573 -741 3001 133 38 64 chr4 51223629 51224024 -151104323 + MER4B LTR ERV1 1 376 -234 4526 146 64 9 chr4 51224024 51224807 -151103540 + LTR1B LTR ERV1 1 826 0 3001 133 38 64 chr4 51224807 51225037 -151103310 + MER4B LTR ERV1 376 610 0 254 246 0 0 chr4 51225058 51225119 -151103228 + MIR SINE MIR 125 185 -77 518 301 92 46 chr4 51225124 51225406 -151102941 - L2 LINE L2 0 3313 3019 22 0 0 0 chr4 51225477 51225499 -151102848 + AT_rich Low_complexity Low_complexity 1 22 0 1527 176 0 16 chr4 51225573 51225823 -151102524 - AluJb SINE Alu -32 280 35 2403 162 138 62 chr4 51226962 51227689 -151100658 + LTR1B LTR ERV1 1 785 0 535 233 42 0 chr4 51227693 51227813 -151100534 - MIR SINE MIR -57 205 81 226 360 22 11 chr4 51227814 51227903 -151100444 - MIR SINE MIR -153 109 20 2004 152 7 3 chr4 51228915 51229225 -151099122 - AluSx SINE Alu -1 311 1 1706 239 66 44 chr4 51229236 51230114 -151098233 + L1ME3A LINE L1 5036 5953 -217 25 51 0 0 chr4 51230151 51230190 -151098157 + AT_rich Low_complexity Low_complexity 1 39 0 2255 117 0 3 chr4 51230873 51231182 -151097165 - AluSx SINE Alu -4 308 1 264 211 0 0 chr4 51231844 51231901 -151096446 - L1ME LINE L1 -552 5569 5513 585 247 199 81 chr4 51232069 51232450 -151095897 - L2 LINE L2 0 3313 2888 294 268 8 98 chr4 51232454 51232577 -151095770 - L2 LINE L2 -22 3291 3180 505 320 202 38 chr4 51232863 51232986 -151095361 - L2 LINE L2 -482 2832 2731 2332 114 3 0 chr4 51232986 51233294 -151095053 - AluSq SINE Alu -4 309 1 505 320 202 38 chr4 51233294 51234219 -151094128 - L2 LINE L2 -583 2731 1612 841 280 53 7 chr4 51236008 51236312 -151092035 - LTR16C LTR ERVL -85 406 89 312 316 38 51 chr4 51236399 51236557 -151091790 - MIR3 SINE MIR -47 161 6 809 294 79 73 chr4 51237901 51237996 -151090351 + L1MC/D LINE L1 2777 2870 -3276 2179 125 0 25 chr4 51237996 51238316 -151090031 - AluSx SINE Alu 0 312 1 809 294 79 73 chr4 51238316 51238904 -151089443 + L1MC/D LINE L1 2870 3501 -2645 2177 83 0 60 chr4 51238910 51239224 -151089123 - AluSc SINE Alu -14 295 1 2522 47 0 0 chr4 51239237 51239535 -151088812 - AluY SINE Alu -13 298 1 1270 96 5 43 chr4 51240010 51240218 -151088129 - L1PA11 LINE L1 -1 6173 5974 2325 64 0 29 chr4 51240251 51240565 -151087782 + AluY SINE Alu 1 305 -6 1237 294 62 11 chr4 51240723 51241372 -151086975 + L1MC4a LINE L1 5293 5974 -1834 319 267 92 37 chr4 51241730 51241947 -151086400 + L1MC/D LINE L1 3587 3815 -2331 35 83 0 0 chr4 51241949 51242033 -151086314 + AT_rich Low_complexity Low_complexity 1 84 0 324 211 128 89 chr4 51242147 51242327 -151086020 + L1MC/D LINE L1 5083 5269 -877 2409 89 0 6 chr4 51242333 51242647 -151085700 - AluSx SINE Alu 0 312 1 548 328 115 15 chr4 51242690 51243089 -151085258 + L1MC/D LINE L1 5313 5751 -2057 1781 150 11 11 chr4 51244288 51244574 -151083773 + AluJb SINE Alu 1 286 -26 749 21 83 17 chr4 51244574 51244857 -151083490 + (TA)n Simple_repeat Simple_repeat 1 301 0 180 0 0 0 chr4 51244856 51244876 -151083471 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 26 50 0 0 chr4 51245223 51245263 -151083084 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr4 51245370 51245398 -151082949 + AT_rich Low_complexity Low_complexity 1 28 0 943 212 8 25 chr4 51245703 51245939 -151082408 + L1PB4 LINE L1 5911 6142 -14 287 312 58 19 chr4 51245987 51246141 -151082206 + L2 LINE L2 2805 2964 -308 712 82 0 10 chr4 51246349 51246447 -151081900 - U6 snRNA snRNA -10 97 1 1289 91 5 43 chr4 51247799 51248007 -151080340 - L1PA11 LINE L1 -1 6173 5974 2149 75 0 31 chr4 51248040 51248355 -151079992 + AluY SINE Alu 1 306 0 308 341 42 12 chr4 51248643 51248786 -151079561 - MIR SINE MIR -86 122 23 250 200 73 0 chr4 51248814 51248869 -151079478 + MIR SINE MIR 202 260 -2 927 151 0 27 chr4 51249441 51249587 -151078760 - FLAM_C SINE Alu -1 142 1 457 67 0 0 chr4 51249613 51249673 -151078674 - U6 snRNA snRNA -47 60 1 281 291 38 0 chr4 51250251 51250330 -151078017 + MIR3 SINE MIR 121 202 -6 253 179 0 18 chr4 51251181 51251237 -151077110 - L1P5 LINE L1 -319 5837 5783 339 322 79 9 chr4 51251251 51251478 -151076869 - L1ME LINE L1 -395 5726 5484 456 235 44 0 chr4 51251964 51252100 -151076247 - MER117 DNA MER1_type -53 144 3 555 283 14 7 chr4 51252284 51252429 -151075918 - MIR SINE MIR -109 153 8 241 254 68 0 chr4 51253327 51253386 -151074961 - L2 LINE L2 -3 3269 3207 231 347 111 7 chr4 51253697 51253841 -151074506 + MIR SINE MIR 73 231 -31 752 277 40 0 chr4 51253948 51254180 -151074167 + MIR SINE MIR 19 259 -3 291 333 66 51 chr4 51254258 51254531 -151073816 - L2 LINE L2 -62 3210 2934 539 220 7 92 chr4 51255146 51255287 -151073060 + MER5B DNA MER1_type 2 130 -48 3051 58 0 0 chr4 51255293 51255670 -151072677 - L1PA8 LINE L1 -2 6170 5794 1765 159 7 26 chr4 51255823 51256131 -151072216 + AluJb SINE Alu 1 302 -10 390 244 94 47 chr4 51256224 51256378 -151071969 + MIR3 SINE MIR 2 165 -62 626 287 11 15 chr4 51256386 51256586 -151071761 + MIR SINE MIR 64 261 -1 791 252 150 41 chr4 51256651 51257119 -151071228 - LTR33 LTR ERVL -2 519 1 2092 121 0 16 chr4 51257138 51257444 -151070903 - AluSx SINE Alu -11 301 1 1415 311 63 11 chr4 51257520 51258156 -151070191 - ERVL LTR ERVL -508 5256 4588 1249 324 75 12 chr4 51258244 51258898 -151069449 - ERVL LTR ERVL -1749 4015 3321 250 294 137 14 chr4 51259137 51259283 -151069064 - LTR33 LTR ERVL -31 490 327 252 163 0 41 chr4 51259779 51259828 -151068519 + CT-rich Low_complexity Low_complexity 2 48 0 243 197 0 84 chr4 51260170 51260241 -151068106 - MER102b DNA MER1_type -35 306 242 218 305 21 0 chr4 51260250 51260345 -151068002 + L2 LINE L2 1582 1678 -1636 248 247 0 22 chr4 51260507 51260596 -151067751 + L1MC4 LINE L1 6614 6700 -1342 347 182 13 0 chr4 51260648 51260725 -151067622 + (TA)n Simple_repeat Simple_repeat 2 79 0 2091 122 0 0 chr4 51260824 51261111 -151067236 - AluSx SINE Alu -13 299 13 2735 255 121 42 chr4 51261135 51261797 -151066550 + L2 LINE L2 1792 2400 -913 2023 159 6 3 chr4 51261797 51262136 -151066211 + MER2 DNA MER2_type 1 340 -4 820 138 13 0 chr4 51262144 51262296 -151066051 + L1MB3 LINE L1 6028 6181 -2 2735 255 121 42 chr4 51262296 51263034 -151065313 + L2 LINE L2 2406 3301 -12 189 0 0 0 chr4 51263037 51263058 -151065289 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 591 217 184 0 chr4 51263922 51264074 -151064273 - MIR SINE MIR -62 200 21 860 171 20 130 chr4 51264464 51264710 -151063637 - MER20 DNA MER1_type 0 219 1 344 250 0 12 chr4 51264773 51264853 -151063494 + L2 LINE L2 3229 3307 -6 388 215 162 42 chr4 51265344 51265535 -151062812 - MIR SINE MIR -7 255 42 1837 186 22 5 chr4 51266054 51266425 -151061922 - MLT2D LTR ERVL -37 377 1 1786 131 24 6 chr4 51266445 51266791 -151061556 + Tigger2 DNA MER2_type 4 2641 -77 2134 123 3 10 chr4 51266835 51267136 -151061211 - AluSx SINE Alu -13 299 1 2484 59 3 10 chr4 51268895 51269200 -151059147 - AluY SINE Alu -8 303 1 959 258 161 34 chr4 51270558 51271035 -151057312 - MLT1F LTR MaLR -4 538 1 221 258 45 56 chr4 51271190 51271279 -151057068 + MER5A DNA MER1_type 101 188 -1 661 170 0 18 chr4 51271651 51271763 -151056584 - FRAM SINE Alu -12 164 55 389 257 171 11 chr4 51272038 51272213 -151056134 - L3b LINE CR1 -157 1426 1224 221 276 0 0 chr4 51272893 51272951 -151055396 + (TA)n Simple_repeat Simple_repeat 1 58 0 2259 102 14 0 chr4 51273000 51273293 -151055054 + AluSx SINE Alu 1 297 -15 380 335 82 6 chr4 51273302 51273484 -151054863 + MIR SINE MIR 54 249 -13 186 43 0 0 chr4 51274064 51274087 -151054260 + (TG)n Simple_repeat Simple_repeat 2 24 0 382 319 64 6 chr4 51274781 51274938 -151053409 - MIR3 SINE MIR -3 205 40 2889 73 17 111 chr4 51275582 51276050 -151052297 + L1PA10 LINE L1 5737 6160 -8 29 47 0 0 chr4 51277142 51277185 -151051162 + AT_rich Low_complexity Low_complexity 1 43 0 532 260 162 15 chr4 51278330 51278534 -151049813 + MIR SINE MIR 2 235 -27 702 246 67 33 chr4 51279403 51279643 -151048704 - Tigger8 DNA MER2_type -187 479 232 591 274 111 19 chr4 51280152 51280360 -151047987 - Tigger8 DNA MER2_type -429 237 11 335 325 106 25 chr4 51280531 51280768 -151047579 + L2 LINE L2 2804 3059 -254 1793 101 3 71 chr4 51281021 51281318 -151047029 - AluSc SINE Alu -32 277 1 2516 47 0 3 chr4 51281332 51281631 -151046716 - AluY SINE Alu -13 298 1 751 300 93 52 chr4 51281814 51281985 -151046362 + L1M4 LINE L1 3682 3845 -2301 362 121 197 0 chr4 51281985 51282051 -151046296 - MADE1 DNA Mariner 0 80 2 751 300 93 52 chr4 51282051 51282264 -151046083 + L1M4 LINE L1 3845 4048 -2098 1694 137 119 0 chr4 51282264 51282542 -151045805 + AluSx SINE Alu 1 311 -1 751 300 93 52 chr4 51282542 51282912 -151045435 + L1M4 LINE L1 4048 4468 -1678 336 253 213 53 chr4 51283089 51283484 -151044863 + L1M4 LINE L1 4562 5019 -1127 1987 25 51 0 chr4 51283486 51283723 -151044624 + AluY SINE Alu 1 249 -62 249 328 48 75 chr4 51283995 51284181 -151044166 + L2 LINE L2 2985 3165 -107 2418 219 29 67 chr4 51284245 51284528 -151043819 + MER21B LTR ERV1 98 390 -473 2931 80 5 11 chr4 51284528 51284903 -151043444 - THE1C LTR MaLR 0 375 3 2418 219 29 67 chr4 51284903 51285277 -151043070 + MER21B LTR ERV1 390 730 -133 2380 104 0 0 chr4 51285499 51285807 -151042540 - AluSg SINE Alu -2 308 1 532 353 145 12 chr4 51285992 51286706 -151041641 + L2 LINE L2 2266 3084 -188 1367 151 33 44 chr4 51287186 51287457 -151040890 + THE1C LTR MaLR 108 375 0 504 258 23 0 chr4 51287828 51287960 -151040387 - MIR SINE MIR -38 224 90 327 253 143 0 chr4 51288611 51288702 -151039645 - MIR SINE MIR -74 188 85 243 0 0 0 chr4 51288749 51288776 -151039571 + (TA)n Simple_repeat Simple_repeat 1 27 0 226 227 0 27 chr4 51288838 51288913 -151039434 + (CACCC)n Simple_repeat Simple_repeat 3 75 0 823 211 49 15 chr4 51289195 51289399 -151038948 - MER58 DNA MER1_type -55 2365 76 282 260 98 32 chr4 51289486 51289609 -151038738 + L2 LINE L2 3183 3313 0 26 30 0 0 chr4 51289668 51289701 -151038646 + AT_rich Low_complexity Low_complexity 1 33 0 1623 141 99 3 chr4 51290309 51290592 -151037755 - AluSg SINE Alu 0 310 1 518 157 45 11 chr4 51290829 51290918 -151037429 + AluS SINE Alu 2 93 -220 2277 80 3 22 chr4 51291133 51291445 -151036902 - AluSc SINE Alu -3 306 1 889 206 86 19 chr4 51292160 51292369 -151035978 + MIR SINE MIR 3 225 -37 1940 127 42 0 chr4 51292407 51292691 -151035656 + AluJb SINE Alu 1 296 -16 228 203 16 31 chr4 51292924 51292988 -151035359 + GA-rich Low_complexity Low_complexity 5 67 0 311 309 75 70 chr4 51293139 51293340 -151035007 + MIR SINE MIR 14 215 -47 364 250 14 97 chr4 51295420 51295564 -151032783 + L2 LINE L2 3137 3268 -4 1055 148 67 22 chr4 51295673 51295896 -151032451 + L1M4 LINE L1 5584 5816 -368 205 292 104 0 chr4 51296268 51296364 -151031983 - MIR SINE MIR 0 262 157 1856 140 36 47 chr4 51296370 51296734 -151031613 + L1MB8 LINE L1 5814 6173 -5 4832 87 11 3 chr4 51297140 51297770 -151030577 - L1PA13 LINE L1 -5 6158 5524 259 289 121 91 chr4 51298532 51299094 -151029253 + L2 LINE L2 2683 3265 -7 2042 147 0 0 chr4 51299957 51300249 -151028098 - AluSx SINE Alu -20 292 1 1891 123 0 42 chr4 51300606 51300891 -151027456 + AluSx SINE Alu 1 273 -39 351 0 0 0 chr4 51300898 51300937 -151027410 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 760 212 75 55 chr4 51300943 51301176 -151027171 - MIR SINE MIR 0 262 20 243 280 65 32 chr4 51301385 51301478 -151026869 - MIR3 SINE MIR -5 203 108 736 109 0 0 chr4 51301892 51301993 -151026354 + HY3 scRNA scRNA 1 101 0 949 70 85 8 chr4 51301996 51302125 -151026222 - MER85 DNA T2_type 0 139 1 253 278 22 22 chr4 51302533 51302623 -151025724 + LTR23-int LTR ERV1 1305 1394 -3729 372 221 41 41 chr4 51302655 51302777 -151025570 + LTR57-int LTR ERVL 1011 1132 -4211 * 983 156 59 21 chr4 51302669 51302855 -151025492 + LTR23-int LTR ERV1 3082 3274 -3057 706 204 11 91 chr4 51302853 51303128 -151025219 + LTR23-int LTR ERV1 3462 3714 -2617 * 6299 185 25 47 chr4 51303144 51304598 -151023749 + LTR23-int LTR ERV1 1215 5442 -1316 878 171 103 0 chr4 51304872 51305047 -151023300 + LTR47A LTR ERVL 260 452 0 342 285 142 38 chr4 51305287 51305603 -151022744 - L1ME4a LINE L1 -59 6062 5714 1987 167 3 0 chr4 51305979 51306273 -151022074 - AluSx SINE Alu -17 295 1 1274 126 33 14 chr4 51307634 51307848 -151020499 - MSTB1 LTR MaLR -22 410 193 1158 125 0 0 chr4 51307848 51308008 -151020339 - AluSg/x SINE Alu -11 301 142 1997 107 48 7 chr4 51308011 51308300 -151020047 - AluSq SINE Alu -12 301 1 813 203 30 41 chr4 51308300 51308497 -151019850 - MSTB1 LTR MaLR -231 195 1 807 271 30 5 chr4 51308497 51308696 -151019651 - MIR SINE MIR -35 227 24 239 277 89 30 chr4 51308721 51308822 -151019525 - MIR SINE MIR -122 140 34 2226 131 0 0 chr4 51308902 51309278 -151019069 + AluSx SINE Alu 1 376 0 297 75 0 0 chr4 51309284 51309324 -151019023 + (GGGA)n Simple_repeat Simple_repeat 3 42 0 21 0 0 0 chr4 51310055 51310076 -151018271 + AT_rich Low_complexity Low_complexity 1 21 0 3794 73 7 0 chr4 51310096 51310546 -151017801 + MLT2A2 LTR ERVL 1 453 0 488 234 155 50 chr4 51311320 51311559 -151016788 + L1ME LINE L1 5526 5789 -332 194 375 0 0 chr4 51311574 51311646 -151016701 + L2 LINE L2 3240 3311 -2 410 292 42 52 chr4 51312379 51312571 -151015776 - MIR SINE MIR -53 209 20 287 351 69 23 chr4 51312707 51312881 -151015466 + MER5A DNA MER1_type 7 188 -1 1179 259 103 76 chr4 51312894 51313173 -151015174 + L1MC5 LINE L1 6479 6749 -1212 2075 129 0 28 chr4 51313173 51313490 -151014857 + AluSx SINE Alu 3 310 -2 1179 259 103 76 chr4 51313490 51314297 -151014050 + L1MC5 LINE L1 6749 7593 -368 308 261 15 0 chr4 51314337 51314402 -151013945 + Zaphod DNA AcHobo 3 68 -3963 1151 266 161 52 chr4 51314431 51314908 -151013439 + MER115 DNA AcHobo 164 692 -1 335 161 0 37 chr4 51315669 51315750 -151012597 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 237 229 0 0 chr4 51315813 51315861 -151012486 - L1MC4 LINE L1 -1342 6700 6653 485 214 69 42 chr4 51317449 51317813 -151010534 + MLT1J LTR MaLR 64 445 -1 2369 103 0 0 chr4 51319220 51319521 -151008826 + AluSx SINE Alu 1 301 -11 323 266 153 0 chr4 51320293 51320417 -151007930 - MIR SINE MIR -3 259 117 2094 115 17 0 chr4 51320785 51321080 -151007267 + AluSx SINE Alu 1 300 -12 313 274 153 0 chr4 51321852 51321976 -151006371 - MIR SINE MIR -3 259 117 834 212 6 18 chr4 51322459 51322624 -151005723 - FRAM SINE Alu -13 163 1 250 313 50 44 chr4 51322997 51323157 -151005190 - MIR SINE MIR 0 262 102 2233 132 0 0 chr4 51324401 51324704 -151003643 + AluSx SINE Alu 1 303 -9 215 284 15 0 chr4 51324798 51324865 -151003482 + (TAG)n Simple_repeat Simple_repeat 3 70 0 763 219 140 26 chr4 51324865 51325109 -151003238 - MIR SINE MIR 0 262 7 234 298 96 0 chr4 51325631 51325725 -151002622 + MIR SINE MIR 63 165 -97 1971 148 0 7 chr4 51326463 51326754 -151001593 + AluSx SINE Alu 1 289 -23 1264 194 23 43 chr4 51327689 51328034 -151000313 + THE1C LTR MaLR 1 338 -37 398 58 0 0 chr4 51328192 51328244 -151000103 + MLT2B1 LTR ERVL 469 520 0 598 288 84 0 chr4 51328470 51328661 -150999686 - MIR SINE MIR -4 258 52 333 0 0 0 chr4 51329175 51329212 -150999135 + (CA)n Simple_repeat Simple_repeat 2 38 0 206 269 19 0 chr4 51329680 51329732 -150998615 + L3b LINE CR1 1296 1348 -235 421 143 99 0 chr4 51330039 51330130 -150998217 - MLT1A2 LTR MaLR -274 100 1 5867 87 60 19 chr4 51330343 51331254 -150997093 + SVA Other Other 438 1386 0 662 276 41 65 chr4 51331710 51332029 -150996318 + MLT1J2 LTR MaLR 5 320 -130 253 313 20 10 chr4 51332395 51332494 -150995853 + (CATATA)n Simple_repeat Simple_repeat 4 103 0 219 69 0 0 chr4 51332664 51332693 -150995654 + (TG)n Simple_repeat Simple_repeat 1 29 0 508 220 93 28 chr4 51332793 51333007 -150995340 - MER113 DNA MER1_type? -293 228 1 292 280 54 11 chr4 51333567 51333660 -150994687 - MIR SINE MIR 0 262 166 364 270 103 81 chr4 51334812 51334997 -150993350 + MIR SINE MIR 2 190 -72 22 35 0 0 chr4 51335414 51335443 -150992904 + AT_rich Low_complexity Low_complexity 1 29 0 1267 153 121 16 chr4 51335487 51335735 -150992612 + AluJo SINE Alu 2 275 -37 1351 243 36 32 chr4 51335820 51336293 -150992054 + L1ME1 LINE L1 5648 6122 -44 363 247 65 26 chr4 51336182 51336336 -150992011 + L1MA10 LINE L1 6175 6334 0 * 201 237 119 0 chr4 51336780 51336839 -150991508 + L2 LINE L2 3248 3313 0 551 144 67 10 chr4 51336955 51337059 -150991288 - FLAM_A SINE Alu 0 142 33 212 143 48 0 chr4 51337390 51337432 -150990915 + T-rich Low_complexity Low_complexity 2 45 0 266 279 87 45 chr4 51338793 51339058 -150989289 + L1MC5 LINE L1 7620 7895 -66 2395 131 64 15 chr4 51340107 51340513 -150987834 - MSTB LTR MaLR 0 426 1 298 306 12 12 chr4 51340772 51340857 -150987490 - MIR SINE MIR -173 89 5 3891 171 34 76 chr4 51340864 51341860 -150986487 - LTR13 LTR ERVK 0 954 1 304 245 226 0 chr4 51342376 51342482 -150985865 + FLAM_C SINE Alu 4 133 0 24 0 0 0 chr4 51343045 51343069 -150985278 + AT_rich Low_complexity Low_complexity 1 24 0 1994 128 3 10 chr4 51343108 51343396 -150984951 + AluSx SINE Alu 4 289 -23 1014 136 96 0 chr4 51343411 51343588 -150984759 + Tigger5 DNA MER2_type 2128 2321 -2 413 329 98 0 chr4 51343729 51343893 -150984454 + MIR3 SINE MIR 21 200 -8 322 254 9 21 chr4 51343984 51344089 -150984258 + L2 LINE L2 2897 3004 -309 300 273 27 18 chr4 51344476 51344586 -150983761 - MARNA DNA Mariner -111 475 365 2239 108 0 0 chr4 51344989 51345284 -150983063 - AluSg SINE Alu -15 295 1 401 215 23 169 chr4 51345574 51345770 -150982577 + L1MC4 LINE L1 7554 7814 -101 399 318 80 0 chr4 51346207 51346383 -150981964 + MIR SINE MIR 73 262 0 2794 156 95 2 chr4 51346394 51346908 -150981439 + MER68 LTR ERV1 1 562 0 23 33 0 0 chr4 51347846 51347876 -150980471 + AT_rich Low_complexity Low_complexity 1 30 0 2162 131 3 6 chr4 51347914 51348227 -150980120 - AluSx SINE Alu 0 312 1 243 88 0 0 chr4 51348447 51348481 -150979866 + (T)n Simple_repeat Simple_repeat 1 34 0 364 175 0 0 chr4 51349038 51349101 -150979246 + Tigger2 DNA MER2_type 1 63 -2655 2589 115 21 11 chr4 51349107 51349541 -150978806 + Tigger2 DNA MER2_type 2280 2717 -1 533 209 0 0 chr4 51349679 51349789 -150978558 - MER46C DNA MER2_type -56 282 173 224 200 0 0 chr4 51349789 51349829 -150978518 + (CA)n Simple_repeat Simple_repeat 1 40 0 2169 119 7 3 chr4 51350111 51350413 -150977934 + AluSx SINE Alu 1 303 -9 1828 132 51 0 chr4 51352258 51352531 -150975816 + AluSx SINE Alu 1 287 -25 2332 70 0 3 chr4 51352543 51352853 -150975494 + AluSq SINE Alu 1 309 0 250 231 115 0 chr4 51353079 51353157 -150975190 + MIR SINE MIR 109 195 -67 202 396 24 24 chr4 51353208 51353501 -150974846 + L2 LINE L2 2565 2857 -457 497 230 32 24 chr4 51353764 51353890 -150974457 - MER5A DNA MER1_type -1 188 62 2422 63 0 3 chr4 51354223 51354524 -150973823 + AluY SINE Alu 1 300 -11 2109 144 0 0 chr4 51354761 51355067 -150973280 + AluSx SINE Alu 7 312 0 387 278 232 7 chr4 51355104 51355255 -150973092 - MIR3 SINE MIR -5 203 19 3462 251 145 56 chr4 51355381 51356091 -150972256 + HAL1 LINE L1 1 647 -1860 791 187 0 8 chr4 51356091 51356225 -150972122 - FLAM_A SINE Alu 0 133 1 3462 251 145 56 chr4 51356225 51357662 -150970685 + HAL1 LINE L1 647 2350 -157 1506 171 146 31 chr4 51357662 51358107 -150970240 - LTR54B LTR ERV1 -2 496 1 3462 251 145 56 chr4 51358107 51358156 -150970191 + HAL1 LINE L1 2350 2393 -114 395 271 39 46 chr4 51358508 51358721 -150969626 - MIR SINE MIR 0 262 4 2548 46 0 3 chr4 51359028 51359330 -150969017 - AluY SINE Alu -10 301 1 23 19 0 39 chr4 51359661 51359673 -150968674 + AT_rich Low_complexity Low_complexity 1 12 -38 689 120 0 0 chr4 51359673 51359781 -150968566 + L1MA5A LINE L1 6190 6297 0 23 19 0 39 chr4 51359781 51359798 -150968549 + AT_rich Low_complexity Low_complexity 12 28 -22 1920 153 40 0 chr4 51359798 51360098 -150968249 + AluSx SINE Alu 1 312 0 23 19 0 39 chr4 51360098 51360119 -150968228 + AT_rich Low_complexity Low_complexity 28 50 0 194 215 13 0 chr4 51361398 51361477 -150966870 + (TA)n Simple_repeat Simple_repeat 2 81 0 456 227 0 10 chr4 51361478 51361575 -150966772 + MLT1J2 LTR MaLR 68 163 -287 636 211 91 26 chr4 51362684 51362728 -150965619 + L1MC5 LINE L1 7632 7672 -289 219 36 0 0 chr4 51362728 51362756 -150965591 + (TG)n Simple_repeat Simple_repeat 1 28 0 636 211 91 26 chr4 51362756 51362976 -150965371 + L1MC5 LINE L1 7672 7913 -48 1211 263 162 10 chr4 51363971 51364476 -150963871 + MLT1G LTR MaLR 9 590 0 257 292 0 31 chr4 51365089 51365154 -150963193 + L2 LINE L2 3249 3311 -2 209 316 52 29 chr4 51365614 51365750 -150962597 + MIR3 SINE MIR 66 204 -4 604 319 92 0 chr4 51366048 51366233 -150962114 + MIR SINE MIR 47 248 -14 1767 84 0 0 chr4 51366491 51366729 -150961618 + L1PA6 LINE L1 5917 6154 0 2255 87 56 34 chr4 51366984 51367340 -150961007 - THE1B LTR MaLR 0 364 1 329 311 66 16 chr4 51367381 51367503 -150960844 - L2 LINE L2 0 3272 3145 233 343 0 0 chr4 51367629 51367696 -150960651 - MIR3 SINE MIR -39 169 103 2092 120 0 0 chr4 51367763 51368062 -150960285 + AluSc SINE Alu 1 299 -10 237 108 0 0 chr4 51368155 51368192 -150960155 + (CA)n Simple_repeat Simple_repeat 2 38 0 261 192 0 19 chr4 51368242 51368294 -150960053 + MIR SINE MIR 183 233 -29 1983 136 7 0 chr4 51368580 51368874 -150959473 + AluSq SINE Alu 1 296 -17 3675 195 59 14 chr4 51368937 51370646 -150957701 + L1MB7 LINE L1 4401 6184 0 254 235 107 60 chr4 51370913 51371062 -150957285 - MLT1H LTR MaLR -2 547 392 918 312 40 9 chr4 51372756 51373105 -150955242 + L2 LINE L2 2213 2572 -742 241 231 0 0 chr4 51373116 51373168 -150955179 + MLT1H LTR MaLR 1 52 -497 560 217 22 153 chr4 51373368 51373682 -150954665 + MLT1H LTR MaLR 259 531 -18 955 277 68 45 chr4 51373706 51374403 -150953944 + L2 LINE L2 2588 3305 -8 647 299 79 17 chr4 51374796 51375037 -150953310 + MIR SINE MIR 6 261 -1 452 219 42 25 chr4 51375195 51375314 -150953033 + MIR3 SINE MIR 14 134 -74 192 77 0 0 chr4 51375655 51375681 -150952666 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 832 196 19 0 chr4 51375800 51375958 -150952389 + MLT2B3 LTR ERVL 5 165 -389 1008 263 8 15 chr4 51376009 51376271 -150952076 + MIR SINE MIR 1 260 -2 968 240 53 4 chr4 51376943 51377168 -150951179 + MIR SINE MIR 2 237 -25 2099 185 37 62 chr4 51377168 51377437 -150950910 + MER34 LTR ERV1 21 272 -270 4777 159 14 27 chr4 51377437 51378241 -150950106 - MER54B LTR ERVL 0 793 1 2099 185 37 62 chr4 51378241 51378506 -150949841 + MER34 LTR ERV1 272 542 0 415 263 51 0 chr4 51378790 51378908 -150949439 - MIR SINE MIR -111 151 28 186 346 39 19 chr4 51378969 51379125 -150949222 + L2 LINE L2 2224 2382 -932 2389 103 0 6 chr4 51379186 51379498 -150948849 - AluSg SINE Alu 0 310 1 236 248 9 115 chr4 51379544 51379657 -150948690 - MIR SINE MIR -4 258 158 1370 335 97 12 chr4 51379811 51380249 -150948098 - L2 LINE L2 -195 3077 2678 1322 201 84 86 chr4 51380249 51380761 -150947586 + MLT1J LTR MaLR 1 511 0 1370 335 97 12 chr4 51380761 51381282 -150947065 - L2 LINE L2 -594 2678 2040 1383 26 0 0 chr4 51381684 51381838 -150946509 - AluYa5 SINE Alu -8 303 150 1957 135 0 0 chr4 51382015 51382282 -150946065 + AluSx SINE Alu 1 267 -45 813 249 5 66 chr4 51382333 51382605 -150945742 - MIR SINE MIR -4 258 4 2183 126 0 3 chr4 51382813 51383115 -150945232 + AluSx SINE Alu 1 301 -11 2877 148 32 55 chr4 51383783 51384298 -150944049 + MER68 LTR ERV1 1 503 -59 2176 146 3 40 chr4 51384298 51384648 -150943699 - MER1B DNA MER1_type 0 337 1 2877 148 32 55 chr4 51384648 51384701 -150943646 + MER68 LTR ERV1 503 556 -6 376 331 57 2 chr4 51384705 51384889 -150943458 + MIR SINE MIR 1 194 -63 312 209 60 0 chr4 51384924 51384991 -150943356 - MER91 DNA MER1_type -66 74 4 905 225 38 34 chr4 51385028 51385237 -150943110 - MER63A DNA MER1_type 0 210 1 3986 178 42 13 chr4 51385315 51386086 -150942261 + L1MB5 LINE L1 5374 6166 -8 417 264 51 15 chr4 51386152 51386374 -150941973 + L1ME LINE L1 5259 5481 -689 1506 201 3 49 chr4 51386392 51386716 -150941631 + AluJo SINE Alu 1 309 -3 190 347 121 25 chr4 51386796 51386995 -150941352 - L2 LINE L2 -240 3032 2815 2005 148 0 16 chr4 51387230 51387535 -150940812 + AluJb SINE Alu 1 300 -12 311 291 63 44 chr4 51387543 51387701 -150940646 + HAL1 LINE L1 10 170 -2337 403 259 167 12 chr4 51387937 51388099 -150940248 - MIR3 SINE MIR -7 201 15 452 282 209 33 chr4 51388113 51388601 -150939746 + L2 LINE L2 2705 3313 0 23 0 0 0 chr4 51388915 51388938 -150939409 + AT_rich Low_complexity Low_complexity 1 23 0 1551 139 8 45 chr4 51389084 51389350 -150938997 + AluJo SINE Alu 35 290 -22 485 205 10 146 chr4 51389704 51389909 -150938438 - MER69A DNA AcHobo 0 177 1 1639 179 7 20 chr4 51389930 51390226 -150938121 + AluJo SINE Alu 1 292 -20 390 57 0 0 chr4 51390227 51390280 -150938067 + (GGA)n Simple_repeat Simple_repeat 1 53 0 892 267 64 4 chr4 51390674 51390910 -150937437 - MIR SINE MIR 0 262 13 24 0 0 0 chr4 51391146 51391170 -150937177 + AT_rich Low_complexity Low_complexity 1 24 0 2133 131 0 3 chr4 51391553 51391851 -150936496 + AluSx SINE Alu 1 297 -15 186 43 0 0 chr4 51391851 51391874 -150936473 + (TA)n Simple_repeat Simple_repeat 1 23 0 282 281 62 27 chr4 51392362 51392508 -150935839 - MIR3 SINE MIR -14 194 44 207 262 233 10 chr4 51392585 51392688 -150935659 + L2 LINE L2 3186 3311 -2 508 233 101 50 chr4 51393530 51393689 -150934658 - FAM SINE Alu -18 167 1 958 127 27 7 chr4 51394137 51394287 -150934060 + MER47A DNA MER2_type 1 153 -213 1892 163 0 7 chr4 51394287 51394582 -150933765 + AluJb SINE Alu 1 293 -19 2007 143 0 0 chr4 51394588 51394881 -150933466 + AluSx SINE Alu 1 293 -19 276 71 24 0 chr4 51394899 51394941 -150933406 + MER47A DNA MER2_type 141 183 -183 281 51 26 0 chr4 51394943 51394982 -150933365 + Alu SINE Alu 2 41 -259 325 214 145 46 chr4 51395082 51395213 -150933134 + L1M4 LINE L1 3356 3499 -2647 5500 74 30 54 chr4 51395217 51396320 -150932027 + SVA Other Other 1 868 -520 690 155 28 72 chr4 51397223 51397404 -150930943 - HAL1 LINE L1 -183 2324 2152 2241 110 0 0 chr4 51397423 51397714 -150930633 - AluSp SINE Alu -6 307 17 2174 121 0 13 chr4 51398229 51398535 -150929812 - AluSx SINE Alu -10 302 1 337 379 39 0 chr4 51398604 51398757 -150929590 + L2 LINE L2 2902 3060 -212 1021 271 137 31 chr4 51399741 51400166 -150928181 - MLT1K LTR MaLR -52 536 67 884 234 54 38 chr4 51400236 51400475 -150927872 + MIR SINE MIR 20 262 0 215 297 189 0 chr4 51400668 51400742 -150927605 - L2 LINE L2 -10 3262 3175 2030 133 0 35 chr4 51400961 51401278 -150927069 + AluJb SINE Alu 1 306 -6 550 340 19 0 chr4 51401283 51401442 -150926905 - MER91B DNA MER1_type -28 162 1 998 187 93 16 chr4 51401557 51401803 -150926544 + Charlie5 DNA MER1_type 1 265 -2347 859 114 69 6 chr4 51401798 51401973 -150926374 + Charlie5 DNA MER1_type 2400 2585 -27 * 614 259 96 19 chr4 51402120 51402352 -150925995 + MIR SINE MIR 15 252 -10 2294 105 7 3 chr4 51402796 51403100 -150925247 - AluSx SINE Alu -7 305 1 22 0 0 0 chr4 51403208 51403230 -150925117 + AT_rich Low_complexity Low_complexity 1 22 0 257 257 68 0 chr4 51403660 51403734 -150924613 + MIR SINE MIR 85 163 -99 676 91 30 0 chr4 51403941 51404040 -150924307 + L1PA14 LINE L1 6060 6161 0 2142 138 0 19 chr4 51404093 51404411 -150923936 + AluSx SINE Alu 1 312 0 1446 204 0 61 chr4 51404961 51405289 -150923058 + AluJo SINE Alu 1 308 -4 248 217 161 18 chr4 51405520 51405642 -150922705 + HAL1b LINE L1 1236 1347 -1 2259 115 0 0 chr4 51406861 51407156 -150921191 - AluSx SINE Alu -17 295 1 2049 87 70 33 chr4 51408093 51408393 -150919954 + AluSx SINE Alu 1 311 -1 354 308 75 6 chr4 51408443 51408602 -150919745 + MER117 DNA MER1_type 13 182 -15 630 255 69 23 chr4 51408813 51409029 -150919318 + HAL1 LINE L1 233 458 -2049 1307 239 88 51 chr4 51409046 51409301 -150919046 + HAL1 LINE L1 518 762 -1745 2168 99 3 7 chr4 51409301 51409595 -150918752 - AluSx SINE Alu -16 296 4 1307 239 88 51 chr4 51409595 51409825 -150918522 + HAL1 LINE L1 762 1021 -1486 225 191 0 0 chr4 51410032 51410079 -150918268 - LTR66 LTR ERVL -169 441 395 296 289 0 0 chr4 51410084 51410174 -150918173 + L1MC4 LINE L1 6614 6703 -1339 * 319 173 99 0 chr4 51410094 51410175 -150918172 - L1MC4 LINE L1 -1339 6703 6615 2276 108 0 0 chr4 51410175 51410472 -150917875 - AluSx SINE Alu -15 297 1 1766 229 77 38 chr4 51410472 51411004 -150917343 + HAL1 LINE L1 1280 1832 -675 830 153 6 23 chr4 51411135 51411311 -150917036 + AluYa5 SINE Alu 134 306 -5 6098 184 56 39 chr4 51411320 51411391 -150916956 - L1MDa LINE L1 -4295 2245 2177 880 149 0 22 chr4 51411391 51411545 -150916802 - FLAM_C SINE Alu 0 133 2 6098 184 56 39 chr4 51411545 51411780 -150916567 - L1MDa LINE L1 -4363 2177 1948 2046 135 0 7 chr4 51411780 51412083 -150916264 - AluSq SINE Alu -12 301 1 6098 184 56 39 chr4 51412083 51412618 -150915729 - L1MDa LINE L1 -4592 1948 1424 2194 93 0 4 chr4 51412618 51412927 -150915420 - AluSc SINE Alu 0 308 1 6098 184 56 39 chr4 51412927 51413558 -150914789 - L1MDa LINE L1 -5116 1424 744 2493 188 41 8 chr4 51413925 51414410 -150913937 - MLT1D LTR MaLR -4 501 1 343 270 10 20 chr4 51414450 51414550 -150913797 + L2 LINE L2 3178 3276 -37 267 293 24 0 chr4 51414569 51414651 -150913696 - L2 LINE L2 -310 3003 2920 822 247 78 9 chr4 51414932 51415163 -150913184 + MIR SINE MIR 16 262 0 1730 120 4 4 chr4 51415372 51415614 -150912733 + AluSx SINE Alu 60 301 -11 1021 237 72 16 chr4 51415619 51415977 -150912370 + L1M4 LINE L1 2477 2835 -3311 32784 107 12 57 chr4 51415986 51421721 -150906626 + L1PA7 LINE L1 12 5415 -739 6880 113 5 12 chr4 51421721 51422697 -150905650 - LTR5 LTR ERVK 0 969 1 32784 107 12 57 chr4 51422697 51423402 -150904945 + L1PA7 LINE L1 5415 6150 -4 1709 236 22 72 chr4 51423397 51424079 -150904268 + L1M4 LINE L1 2821 3468 -2678 * 3400 184 52 109 chr4 51424084 51425054 -150903293 + MER21A LTR ERV1 1 914 -17 1229 228 22 3 chr4 51425073 51425385 -150902962 + L1M4 LINE L1 3476 3793 -2353 832 169 118 47 chr4 51425385 51425639 -150902708 + MSTA LTR MaLR 1 272 -156 1941 155 6 23 chr4 51425640 51425994 -150902353 + L1MD1 LINE L1 5526 5873 -369 1707 150 78 3 chr4 51426251 51426584 -150901763 + L1MD1 LINE L1 5879 6236 -6 887 244 122 9 chr4 51426611 51426840 -150901507 - MIR SINE MIR -1 261 7 362 191 16 186 chr4 51426892 51427086 -150901261 + Charlie8 DNA MER1_type 170 1428 -989 30 27 0 0 chr4 51427146 51427183 -150901164 + AT_rich Low_complexity Low_complexity 1 37 0 2400 52 35 0 chr4 51427238 51427528 -150900819 + AluY SINE Alu 2 301 -10 773 170 54 28 chr4 51427753 51427946 -150900401 + MLT1B LTR MaLR 1 183 -191 468 136 0 0 chr4 51427947 51428013 -150900334 + AluSc SINE Alu 46 111 -198 3703 68 2 59 chr4 51428013 51428093 -150900254 - MER9 LTR ERVK 0 511 428 6406 66 11 46 chr4 51428093 51429770 -150898577 + SVA Other Other 1 1386 0 3703 68 2 59 chr4 51429770 51430229 -150898118 - MER9 LTR ERVK -83 428 2 1518 109 0 5 chr4 51430229 51430430 -150897917 + AluSc SINE Alu 105 304 -5 833 179 52 61 chr4 51430446 51430658 -150897689 + MLT1B LTR MaLR 181 390 0 346 178 75 62 chr4 51430813 51430959 -150897388 + LTR16C LTR ERVL 344 491 0 1203 186 29 51 chr4 51433096 51433407 -150894940 - MER33 DNA MER1_type 0 324 21 23 86 0 0 chr4 51434340 51434398 -150893949 + AT_rich Low_complexity Low_complexity 1 58 0 2016 157 7 0 chr4 51434432 51434732 -150893615 - AluJb SINE Alu -10 302 1 21 0 0 0 chr4 51435327 51435348 -150892999 + AT_rich Low_complexity Low_complexity 1 21 0 244 95 95 0 chr4 51436574 51436616 -150891731 + L2 LINE L2 3227 3272 0 2018 128 10 7 chr4 51436764 51437060 -150891287 - AluSx SINE Alu -13 299 3 24 0 0 0 chr4 51437113 51437137 -150891210 + AT_rich Low_complexity Low_complexity 1 24 0 2529 127 22 8 chr4 51437477 51437958 -150890389 + MER1A DNA MER1_type 1 529 0 6422 108 27 26 chr4 51438014 51438049 -150890298 + L1MA3 LINE L1 4928 4961 -1344 3553 54 11 9 chr4 51438049 51438492 -150889855 - MLT2A1 LTR ERVL 0 444 1 6422 108 27 26 chr4 51438492 51439303 -150889044 + L1MA3 LINE L1 4961 5777 -528 2597 43 0 0 chr4 51439303 51439604 -150888743 + AluY SINE Alu 1 301 -10 6422 108 27 26 chr4 51439604 51440126 -150888221 + L1MA3 LINE L1 5777 6297 -8 399 298 176 10 chr4 51440163 51440653 -150887694 + L1ME4a LINE L1 5539 6109 -12 406 261 118 20 chr4 51441775 51442283 -150886064 + L1ME2 LINE L1 5153 5716 -454 315 354 62 20 chr4 51442297 51442492 -150885855 + L1ME2 LINE L1 5727 5929 -235 2142 106 10 0 chr4 51442568 51442860 -150885487 - AluSx SINE Alu -17 295 1 321 26 0 0 chr4 51442930 51442968 -150885379 + (TG)n Simple_repeat Simple_repeat 2 39 0 31 44 0 0 chr4 51443198 51443243 -150885104 + AT_rich Low_complexity Low_complexity 1 45 0 212 0 36 0 chr4 51443593 51443621 -150884726 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1572 109 92 13 chr4 51443626 51443865 -150884482 - AluSx SINE Alu -54 258 1 2103 202 36 39 chr4 51443990 51444549 -150883798 + L1MC4 LINE L1 7175 7731 -311 258 413 8 0 chr4 51445119 51445240 -150883107 + MIR3 SINE MIR 64 185 -23 1195 269 72 2 chr4 51445450 51445828 -150882519 + L1M1 LINE L1 5440 5840 -465 4534 157 85 8 chr4 51445926 51446522 -150881825 + L1MC2 LINE L1 5299 6004 -340 1693 220 116 20 chr4 51446522 51447022 -150881325 + MER44D DNA MER2_type 2 604 -1 4534 157 85 8 chr4 51447022 51447380 -150880967 + L1MC2 LINE L1 6004 6333 -11 776 181 62 0 chr4 51447776 51447936 -150880411 + FRAM SINE Alu 1 170 -6 856 287 39 8 chr4 51448073 51448433 -150879914 + L1MC4 LINE L1 6558 7009 -883 760 208 55 119 chr4 51448456 51448633 -150879714 + L1ME1 LINE L1 5869 6056 -110 2119 125 7 0 chr4 51448633 51448929 -150879418 + AluSx SINE Alu 1 298 -14 760 208 55 119 chr4 51448929 51449004 -150879343 + L1ME1 LINE L1 6056 6100 -66 13417 29 4 2 chr4 51449004 51451386 -150876961 - L1PA4 LINE L1 -1 6154 3770 760 208 55 119 chr4 51451386 51451444 -150876903 + L1ME1 LINE L1 6100 6160 -6 2384 179 31 0 chr4 51451575 51451994 -150876353 + MSTB1 LTR MaLR 1 432 0 573 264 48 9 chr4 51451994 51452238 -150876109 + L1MC5 LINE L1 7001 7252 -728 243 206 28 65 chr4 51452341 51452448 -150875899 + L1MC5 LINE L1 7260 7362 -599 234 344 47 0 chr4 51452441 51452569 -150875778 + L1ME3A LINE L1 5439 5572 -598 * 284 103 69 40 chr4 51453086 51453260 -150875087 + (TA)n Simple_repeat Simple_repeat 2 180 0 3491 195 116 85 chr4 51453260 51454026 -150874321 - L1MC4 LINE L1 -126 7916 7176 2294 92 10 3 chr4 51454026 51454321 -150874026 - AluSq SINE Alu -16 297 1 3491 195 116 85 chr4 51454321 51454678 -150873669 - L1MC4 LINE L1 -866 7176 6832 2664 29 3 0 chr4 51454678 51454986 -150873361 + AluYb8 SINE Alu 9 317 -1 3491 195 116 85 chr4 51454986 51455171 -150873176 - L1MC4 LINE L1 -1210 6832 6654 1557 119 9 0 chr4 51455171 51455389 -150872958 - AluSc SINE Alu -15 294 75 3491 195 116 85 chr4 51455389 51455479 -150872868 - L1MC4 LINE L1 -1388 6654 6472 2388 53 0 10 chr4 51455863 51456163 -150872184 + AluY SINE Alu 1 297 -14 232 143 143 0 chr4 51456688 51456779 -150871568 - L1ME4a LINE L1 -2 6119 6016 1134 164 96 36 chr4 51456860 51457110 -150871237 - AluJo SINE Alu -4 308 44 556 292 105 12 chr4 51457112 51457444 -150870903 - L1ME4a LINE L1 -239 5882 5520 397 288 158 70 chr4 51457759 51458259 -150870088 + L2 LINE L2 2434 2977 -337 971 264 84 39 chr4 51458329 51458662 -150869685 + MLT1I LTR MaLR 60 407 -2 2286 138 40 35 chr4 51458770 51459196 -150869151 + MSTA LTR MaLR 1 428 0 282 294 70 79 chr4 51459236 51459450 -150868897 + LTR67 LTR ERVL 79 290 -267 2400 109 0 3 chr4 51459592 51459905 -150868442 - AluSx SINE Alu 0 312 1 446 288 70 9 chr4 51460444 51460745 -150867602 + L1ME3A LINE L1 5548 5883 -287 597 282 69 9 chr4 51460789 51461005 -150867342 + MIR SINE MIR 1 229 -33 1504 112 173 8 chr4 51461215 51461464 -150866883 + AluSg SINE Alu 1 290 -10 254 209 15 0 chr4 51461465 51461532 -150866815 + (TA)n Simple_repeat Simple_repeat 1 68 0 2014 107 14 31 chr4 51461534 51461825 -150866522 - AluSx SINE Alu -20 292 7 1827 207 50 14 chr4 51461948 51462484 -150865863 + L1MB7 LINE L1 5626 6184 0 1977 157 3 3 chr4 51462492 51462804 -150865543 + AluJb SINE Alu 1 312 0 866 311 152 24 chr4 51463209 51463482 -150864865 + L2 LINE L2 2211 2448 -865 4492 151 50 10 chr4 51463482 51464276 -150864071 + LTR1B LTR ERV1 1 826 0 866 311 152 24 chr4 51464276 51464963 -150863384 + L2 LINE L2 2448 3308 -5 2270 78 20 3 chr4 51465094 51465387 -150862960 - AluSc SINE Alu -11 298 1 1870 204 78 13 chr4 51465503 51465964 -150862383 - LTR40a LTR ERVL -24 495 5 641 62 0 0 chr4 51467175 51467256 -150861091 - AluY SINE Alu -229 82 2 972 170 101 36 chr4 51467516 51467793 -150860554 + MER5C DNA MER1_type 30 324 0 910 241 60 57 chr4 51468313 51468689 -150859658 + L2 LINE L2 2681 3054 -259 2158 104 7 3 chr4 51468689 51468987 -150859360 + AluSx SINE Alu 1 299 -13 1811 185 0 0 chr4 51468997 51469299 -150859048 + AluJb SINE Alu 1 302 -10 910 241 60 57 chr4 51469299 51469365 -150858982 + L2 LINE L2 3062 3133 -180 835 278 107 18 chr4 51469375 51469767 -150858580 - L1MC4a LINE L1 -1756 6052 5626 2068 121 3 26 chr4 51472171 51472476 -150855871 - AluSq SINE Alu -15 298 1 714 214 51 56 chr4 51472715 51472911 -150855436 + MIR SINE MIR 19 213 -49 1742 264 84 46 chr4 51474734 51475702 -150852645 - L2 LINE L2 -6 3307 2310 193 322 34 0 chr4 51475696 51475755 -150852592 + L2 LINE L2 3248 3308 -5 * 323 336 107 7 chr4 51475896 51476036 -150852311 - MIR3 SINE MIR -27 181 28 281 233 0 14 chr4 51477224 51477297 -150851050 + MIR SINE MIR 188 259 -3 21 0 0 0 chr4 51477842 51477863 -150850484 + GC_rich Low_complexity Low_complexity 1 21 0 201 39 0 0 chr4 51478093 51478119 -150850228 + (CGG)n Simple_repeat Simple_repeat 2 27 0 216 0 0 0 chr4 51479098 51479122 -150849225 + (T)n Simple_repeat Simple_repeat 1 24 0 705 214 93 24 chr4 51479559 51479754 -150848593 + MIR SINE MIR 35 238 -24 421 192 128 70 chr4 51480873 51481029 -150847318 + MER103 DNA DNA 2 166 0 726 245 35 54 chr4 51481060 51481321 -150847026 + MER112 DNA MER1_type 1 256 0 486 283 24 124 chr4 51481581 51481871 -150846476 - L3 LINE CR1 -283 1294 1034 917 331 123 39 chr4 51482288 51483269 -150845078 - L3 LINE CR1 -352 1225 162 899 173 0 0 chr4 51483836 51483969 -150844378 - FLAM_C SINE Alu 0 133 1 569 93 0 0 chr4 51484208 51484283 -150844064 - Charlie3 DNA MER1_type -8 2702 2628 1368 146 0 79 chr4 51484291 51484544 -150843803 - AluJb SINE Alu -79 233 1 247 243 209 88 chr4 51484545 51484603 -150843744 - MIR SINE MIR -55 207 157 1940 133 54 18 chr4 51484603 51484935 -150843412 - L1MB3 LINE L1 -9 6174 5831 247 243 209 88 chr4 51484935 51485024 -150843323 - MIR SINE MIR -105 157 42 * 334 345 161 14 chr4 51485015 51485363 -150842984 + L3 LINE CR1 1161 1559 -18 2284 118 0 7 chr4 51485401 51485705 -150842642 + AluSx SINE Alu 1 302 -10 477 248 41 8 chr4 51485775 51485896 -150842451 - MARNA DNA Mariner -177 409 285 258 246 186 70 chr4 51486334 51486533 -150841814 - MARNA DNA Mariner -328 258 37 268 226 66 47 chr4 51486548 51486654 -150841693 + L1ME4a LINE L1 6011 6118 -3 186 200 0 146 chr4 51486804 51486859 -150841488 - L2 LINE L2 -9 3263 3217 240 263 26 26 chr4 51486936 51487012 -150841335 - MER57A LTR ERV1 -25 378 303 496 147 136 7 chr4 51489505 51489666 -150838681 - MER20 DNA MER1_type 0 219 1 2106 132 8 54 chr4 51489790 51490161 -150838186 + THE1A LTR MaLR 1 354 -1 247 297 20 30 chr4 51490198 51490299 -150838048 + MER94 DNA DNA 33 132 -2 193 302 0 0 chr4 51490308 51490351 -150837996 - L2 LINE L2 -10 3262 3220 210 332 126 36 chr4 51490780 51491027 -150837320 - L2 LINE L2 -673 2641 2373 1928 131 10 20 chr4 51491462 51491759 -150836588 - AluSx SINE Alu -18 294 1 1919 123 61 3 chr4 51491882 51492175 -150836172 - AluSg SINE Alu 0 310 1 221 227 30 0 chr4 51492739 51492805 -150835542 + (TA)n Simple_repeat Simple_repeat 2 69 0 25 51 0 0 chr4 51492845 51492884 -150835463 + AT_rich Low_complexity Low_complexity 1 39 0 235 256 26 13 chr4 51493405 51493483 -150834864 + (TATG)n Simple_repeat Simple_repeat 4 82 0 24 53 0 0 chr4 51494215 51494253 -150834094 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr4 51494276 51494312 -150834035 + AT_rich Low_complexity Low_complexity 1 36 0 1762 157 0 50 chr4 51494537 51494710 -150833637 - AluJo SINE Alu -10 302 151 2097 118 3 20 chr4 51494710 51495015 -150833332 - AluSp SINE Alu -13 300 1 1762 157 0 50 chr4 51495015 51495159 -150833188 - AluJo SINE Alu -161 151 1 903 249 83 4 chr4 51495216 51495457 -150832890 + MIR SINE MIR 2 261 -1 2344 72 17 0 chr4 51495484 51495775 -150832572 - AluSp SINE Alu -17 296 1 2332 107 0 0 chr4 51495870 51496180 -150832167 - AluSq SINE Alu -3 310 1 23 54 0 0 chr4 51496534 51496571 -150831776 + AT_rich Low_complexity Low_complexity 1 37 0 2532 71 0 0 chr4 51497033 51497329 -150831018 + AluSg SINE Alu 1 296 -14 1376 147 34 144 chr4 51497405 51497470 -150830877 - L1MB8 LINE L1 -2 6176 6105 1898 153 7 13 chr4 51497470 51497771 -150830576 + AluSx SINE Alu 1 299 -13 1376 147 34 144 chr4 51497771 51498087 -150830260 - L1MB8 LINE L1 -73 6105 5837 323 329 43 89 chr4 51498316 51498759 -150829588 - L2 LINE L2 -254 3059 2652 2186 211 79 14 chr4 51498786 51499417 -150828930 - L1M4 LINE L1 -1443 4703 4032 355 216 52 52 chr4 51499413 51499547 -150828800 - L1M4 LINE L1 -2538 3608 3475 * 2031 137 3 3 chr4 51499570 51499877 -150828470 - AluY SINE Alu -4 307 1 24 32 0 0 chr4 51499879 51499910 -150828437 + AT_rich Low_complexity Low_complexity 1 31 0 6893 60 9 43 chr4 51499914 51500901 -150827446 - SVA Other Other 0 1386 433 1490 96 23 40 chr4 51500967 51501270 -150827077 - SVA Other Other -520 866 569 2379 95 0 0 chr4 51501672 51501968 -150826379 + AluSg SINE Alu 1 296 -14 243 235 34 134 chr4 51503333 51503452 -150824895 + MIR SINE MIR 20 126 -82 1792 132 6 15 chr4 51503483 51503870 -150824477 + Charlie3 DNA MER1_type 1 2712 0 471 254 160 57 chr4 51503986 51504198 -150824149 + L2 LINE L2 2939 3199 -114 2583 147 136 9 chr4 51504198 51504653 -150823694 + LTR64 LTR ERVK 1 513 0 471 254 160 57 chr4 51504653 51504771 -150823576 + L2 LINE L2 3199 3303 -10 636 247 88 62 chr4 51504773 51505000 -150823347 + MIR SINE MIR 2 234 -28 303 312 183 43 chr4 51505449 51505750 -150822597 - L1M2 LINE L1 -5711 1138 796 1088 24 16 0 chr4 51506125 51506249 -150822098 + L1PA5 LINE L1 6026 6151 -3 180 0 0 0 chr4 51506474 51506494 -150821853 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 580 168 0 0 chr4 51508841 51508942 -150819405 + HY3 scRNA scRNA 1 101 0 907 85 85 8 chr4 51508945 51509074 -150819273 - MER85 DNA T2_type 0 139 1 462 172 46 67 chr4 51509604 51509762 -150818585 + LTR49-int LTR ERV1 994 3222 -3109 186 191 0 0 chr4 51509959 51510001 -150818346 + (CA)n Simple_repeat Simple_repeat 1 42 0 1866 166 0 0 chr4 51510283 51510572 -150817775 + AluSx SINE Alu 1 289 -23 371 278 232 7 chr4 51510633 51510784 -150817563 - MIR3 SINE MIR -5 203 19 335 161 0 37 chr4 51513094 51513175 -150815172 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 237 229 0 0 chr4 51513238 51513286 -150815061 - L1MC4 LINE L1 -1342 6700 6653 4627 240 27 15 chr4 51513833 51514883 -150813464 - MER4B-int LTR ERV1 -1915 2276 1215 588 169 6 54 chr4 51514865 51515031 -150813316 - MER4B-int LTR ERV1 -3649 3109 2952 * 1017 65 0 0 chr4 51515867 51515991 -150812356 - L1PA5 LINE L1 -5 6149 6026 2888 228 87 9 chr4 51516956 51516992 -150811355 - L1M4 LINE L1 -3004 3142 3110 2255 109 0 6 chr4 51516992 51517305 -150811042 - AluSx SINE Alu -1 311 1 2888 228 87 9 chr4 51517305 51518149 -150810198 - L1M4 LINE L1 -3036 3110 2193 192 297 55 85 chr4 51518926 51519091 -150809256 - L2 LINE L2 -781 2533 2374 783 171 146 104 chr4 51519177 51519493 -150808854 - L1MB7 LINE L1 0 6184 5856 1968 97 16 58 chr4 51519494 51519803 -150808544 - AluSq SINE Alu -17 296 1 233 269 65 0 chr4 51521537 51521630 -150806717 + MER113 DNA MER1_type? 2 100 -421 245 301 180 8 chr4 51521782 51521995 -150806352 + MIR SINE MIR 3 251 -11 1607 129 118 7 chr4 51522536 51522815 -150805532 - AluYa8 SINE Alu 0 310 1 1538 160 72 24 chr4 51523115 51523408 -150804939 + AluJb SINE Alu 1 307 -5 462 219 0 0 chr4 51523414 51523519 -150804828 + (CA)n Simple_repeat Simple_repeat 2 106 0 458 247 26 52 chr4 51523591 51523745 -150804602 - L2 LINE L2 -1 3312 3163 1182 214 9 5 chr4 51523750 51523965 -150804382 - MER58A DNA MER1_type -8 216 1 694 166 5 139 chr4 51524575 51524798 -150803549 - L1MB3 LINE L1 -7 6176 5984 691 334 123 57 chr4 51524913 51525201 -150803146 - L2 LINE L2 0 3272 3005 2077 101 14 0 chr4 51525201 51525487 -150802860 + AluSp SINE Alu 1 290 -23 691 334 123 57 chr4 51525487 51525675 -150802672 - L2 LINE L2 -267 3005 2831 2206 115 0 10 chr4 51525675 51525980 -150802367 - AluSx SINE Alu -9 303 2 691 334 123 57 chr4 51525980 51526647 -150801700 - L2 LINE L2 -441 2831 2066 198 329 24 12 chr4 51527298 51527380 -150800967 + L2 LINE L2 2977 3059 -213 2109 139 7 3 chr4 51527613 51527916 -150800431 + AluSx SINE Alu 1 304 -8 2203 83 7 13 chr4 51528061 51528361 -150799986 - AluSx SINE Alu -10 302 5 508 303 96 83 chr4 51528368 51528479 -150799868 - L1MEd LINE L1 -5050 1069 961 294 50 0 0 chr4 51528479 51528519 -150799828 + (TG)n Simple_repeat Simple_repeat 2 41 0 1465 180 12 4 chr4 51528524 51528768 -150799579 - AluJo SINE Alu -30 282 37 508 303 96 83 chr4 51528768 51529267 -150799080 - L1MEd LINE L1 -5161 958 445 397 125 70 16 chr4 51529267 51529395 -150798952 + CT-rich Low_complexity Low_complexity 2 136 0 1988 144 20 3 chr4 51529731 51530036 -150798311 - AluJb SINE Alu 0 312 3 231 360 12 37 chr4 51531167 51531331 -150797016 + L2 LINE L2 2150 2309 -1005 350 384 37 32 chr4 51531380 51531570 -150796777 - L2 LINE L2 0 3272 3082 5513 157 21 8 chr4 51531620 51532644 -150795703 - L1MC1 LINE L1 -6 6327 5290 331 185 62 0 chr4 51532669 51532750 -150795597 - L1PA16 LINE L1 -6 6160 6075 4761 130 15 3 chr4 51532755 51533709 -150794638 - L1PA16 LINE L1 -150 6015 5053 240 35 0 0 chr4 51533751 51533780 -150794567 + (TG)n Simple_repeat Simple_repeat 2 30 0 421 317 18 45 chr4 51533783 51534007 -150794340 + HAL1 LINE L1 1400 1617 -890 1797 216 19 12 chr4 51534012 51534423 -150793924 - MLT2D LTR ERVL 0 414 1 208 145 66 13 chr4 51534454 51534530 -150793817 + (TTATA)n Simple_repeat Simple_repeat 1 80 0 189 143 71 18 chr4 51534537 51534705 -150793642 + (TA)n Simple_repeat Simple_repeat 1 177 0 21 0 0 0 chr4 51534705 51534726 -150793621 + AT_rich Low_complexity Low_complexity 1 21 0 207 232 60 12 chr4 51534766 51534934 -150793413 + (TA)n Simple_repeat Simple_repeat 2 177 0 29 0 0 0 chr4 51534934 51534963 -150793384 + AT_rich Low_complexity Low_complexity 1 29 0 184 168 64 0 chr4 51534970 51535095 -150793252 + (TA)n Simple_repeat Simple_repeat 1 133 0 447 205 82 0 chr4 51535130 51535252 -150793095 + HAL1 LINE L1 1650 1781 -726 585 238 8 0 chr4 51535397 51535519 -150792828 + MIR SINE MIR 17 139 -123 883 101 0 32 chr4 51535621 51535779 -150792568 - L1MB7 LINE L1 -290 5894 5742 4091 115 0 2 chr4 51535787 51536403 -150791944 - L1PA13 LINE L1 -3 6160 5546 1287 164 3 44 chr4 51536503 51536796 -150791551 + L1MC3 LINE L1 7504 7784 -1 2274 101 7 0 chr4 51537734 51538031 -150790316 - AluSq SINE Alu -14 299 1 378 243 210 7 chr4 51538526 51538802 -150789545 - L1MEc LINE L1 -3939 2457 2126 445 266 42 120 chr4 51538913 51539030 -150789317 - L1MEc LINE L1 -4642 1754 1629 1734 145 45 17 chr4 51539030 51539319 -150789028 - AluJo SINE Alu -15 297 1 445 266 42 120 chr4 51539319 51539383 -150788964 - L1MEc LINE L1 -4767 1629 1594 1060 242 107 16 chr4 51539383 51539747 -150788600 + MLT2C1 LTR ERVL 1 397 0 445 266 42 120 chr4 51539747 51539805 -150788542 - L1MEc LINE L1 -4802 1594 1533 1082 147 0 12 chr4 51539806 51539976 -150788371 - AluSg/x SINE Alu -8 304 137 238 88 0 0 chr4 51540450 51540484 -150787863 + MSTA LTR MaLR 2 35 -393 1685 109 0 4 chr4 51540486 51540716 -150787631 - AluSq SINE Alu -84 229 1 536 69 0 0 chr4 51540716 51540788 -150787559 + MSTA LTR MaLR 357 428 0 588 277 119 72 chr4 51540878 51541201 -150787146 - MLT1J2 LTR MaLR 0 450 101 696 275 25 10 chr4 51541201 51541401 -150786946 - MER63A DNA MER1_type -4 206 4 588 277 119 72 chr4 51541401 51541507 -150786840 - MLT1J2 LTR MaLR -349 101 1 381 178 0 0 chr4 51541863 51541936 -150786411 - MER116 DNA Mariner -4 76 4 499 50 0 0 chr4 51544813 51544873 -150783474 + Alu SINE Alu 233 292 -19 281 368 60 24 chr4 51545865 51546031 -150782316 - L2 LINE L2 -191 3081 2910 600 181 0 35 chr4 51546138 51546254 -150782093 - FAM SINE Alu -56 129 18 183 184 79 0 chr4 51546683 51546721 -150781626 - MIR SINE MIR -55 153 113 1073 204 26 12 chr4 51548576 51548876 -150779471 - L1MC5 LINE L1 -1038 6967 6639 650 335 130 26 chr4 51549264 51549792 -150778555 - HAL1b LINE L1 -794 1713 47 1600 144 19 13 chr4 51550283 51550595 -150777752 - L1MB7 LINE L1 -43 6141 5828 1704 158 36 23 chr4 51550624 51550928 -150777419 + AluJb SINE Alu 1 308 -4 238 232 377 0 chr4 51550929 51550998 -150777349 + Tigger3(Golem) DNA MER2_type 18 112 -2917 * 3206 102 91 37 chr4 51550996 51551615 -150776732 + Tigger3(Golem) DNA MER2_type 2241 2892 -137 1716 110 26 0 chr4 51551625 51551898 -150776449 - L1MA1 LINE L1 -6 6296 6017 766 191 14 0 chr4 51551904 51552051 -150776296 + Tigger3(Golem) DNA MER2_type 2880 3028 -1 2462 150 49 35 chr4 51552051 51552174 -150776173 - L1MB7 LINE L1 -355 5829 5709 2221 108 0 0 chr4 51552174 51552460 -150775887 + AluSx SINE Alu 1 286 -26 2462 150 49 35 chr4 51552460 51553085 -150775262 - L1MB7 LINE L1 -475 5709 5071 217 216 0 0 chr4 51553528 51553565 -150774782 + polypyrimidine Low_complexity Low_complexity 1 37 0 198 71 0 0 chr4 51553668 51553696 -150774651 + (TG)n Simple_repeat Simple_repeat 2 29 0 765 142 14 14 chr4 51553944 51554092 -150774255 - L1MB7 LINE L1 -1090 5056 4909 1676 174 0 3 chr4 51554718 51555012 -150773335 + AluSx SINE Alu 17 309 -3 851 177 94 31 chr4 51555015 51555325 -150773022 + L1ME1 LINE L1 5665 5975 -189 2046 236 75 0 chr4 51555358 51555961 -150772386 + L1M4 LINE L1 3545 4192 -1954 209 138 15 46 chr4 51555962 51556027 -150772320 + GA-rich Low_complexity Low_complexity 2 64 0 414 258 139 19 chr4 51556027 51556236 -150772111 + L1M4 LINE L1 4151 4384 -1762 * 9794 28 0 0 chr4 51556233 51557466 -150770881 - L1P LINE L1 -2134 4012 2780 * 10886 15 0 0 chr4 51557462 51559554 -150768793 + L1HS LINE L1 4065 6155 0 319 280 42 35 chr4 51560676 51560819 -150767528 - MIR3 SINE MIR -44 164 21 1670 190 7 7 chr4 51560862 51561157 -150767190 - AluSx SINE Alu -17 295 1 414 0 0 0 chr4 51561682 51561728 -150766619 + (TG)n Simple_repeat Simple_repeat 2 47 0 450 272 76 6 chr4 51563081 51563239 -150765108 - HAL1 LINE L1 -1895 612 444 1547 194 77 9 chr4 51563253 51563593 -150764754 - MLT1A1 LTR MaLR -2 363 1 230 174 0 0 chr4 51563719 51563765 -150764582 - L1ME2 LINE L1 -9 6155 6110 270 284 15 56 chr4 51563969 51564166 -150764181 - L1MEd LINE L1 -5663 456 268 338 232 11 11 chr4 51564242 51564337 -150764010 - L1MEd LINE L1 -6015 104 10 237 276 42 148 chr4 51564339 51564622 -150763725 + L2 LINE L2 2981 3233 -39 618 320 6 0 chr4 51564803 51564978 -150763369 + L2 LINE L2 2886 3061 -252 206 308 62 15 chr4 51565086 51565151 -150763196 + L2 LINE L2 3243 3310 -3 1638 171 36 4 chr4 51565839 51566164 -150762183 + AluJb SINE Alu 1 334 0 377 315 69 8 chr4 51566475 51566605 -150761742 - MER5A DNA MER1_type -40 149 12 206 303 66 0 chr4 51566623 51566699 -150761648 - MIR SINE MIR -13 249 169 470 228 152 5 chr4 51566861 51567020 -150761327 + MER5A DNA MER1_type 4 189 0 206 239 106 28 chr4 51567852 51567994 -150760353 + L2 LINE L2 2811 2963 -309 2171 125 10 0 chr4 51567999 51568294 -150760053 - AluSx SINE Alu -9 303 6 6799 68 9 0 chr4 51568332 51569427 -150758920 - L1PA8 LINE L1 -13 6159 5053 191 333 15 0 chr4 51569435 51569501 -150758846 + L2 LINE L2 3206 3272 0 203 200 0 22 chr4 51569524 51569569 -150758778 + GA-rich Low_complexity Low_complexity 6 49 0 238 235 73 44 chr4 51569739 51569807 -150758540 + L2 LINE L2 3155 3224 -48 215 357 110 55 chr4 51570858 51571239 -150757108 - L2 LINE L2 0 3272 2871 1704 170 72 0 chr4 51571347 51571624 -150756723 + AluJb SINE Alu 1 297 -15 849 18 118 0 chr4 51571890 51572000 -150756347 - AluY SINE Alu -188 123 1 189 0 0 0 chr4 51572003 51572024 -150756323 + (T)n Simple_repeat Simple_repeat 1 21 0 868 152 0 0 chr4 51572148 51572273 -150756074 + AluJb SINE Alu 1 125 -187 1985 92 49 32 chr4 51572284 51572568 -150755779 - AluSx SINE Alu -23 289 1 267 289 0 26 chr4 51574473 51574549 -150753798 - L2 LINE L2 -10 3303 3230 920 184 43 30 chr4 51575276 51575509 -150752838 - MER106A DNA MER1_type 0 236 1 186 250 59 29 chr4 51576711 51576779 -150751568 + MER5A DNA MER1_type 116 185 -4 37 39 0 0 chr4 51577590 51577641 -150750706 + AT_rich Low_complexity Low_complexity 1 51 0 1364 170 0 18 chr4 51578056 51578279 -150750068 + AluJo SINE Alu 85 303 -9 1022 129 82 12 chr4 51580710 51580880 -150747467 - AluJb SINE Alu 0 312 131 1038 151 132 59 chr4 51580980 51581199 -150747148 + AluJo SINE Alu 72 306 -6 612 271 19 0 chr4 51581313 51581468 -150746879 - MIR SINE MIR -56 206 49 259 351 97 9 chr4 51583644 51583758 -150744589 - MIR SINE MIR -67 141 18 327 342 17 25 chr4 51585303 51585423 -150742924 - MER5A DNA MER1_type -3 186 68 1768 148 32 0 chr4 51585446 51585739 -150742608 - AluJb SINE Alu 0 324 23 506 307 104 15 chr4 51585896 51586098 -150742249 - MIR SINE MIR -41 221 2 23 0 0 0 chr4 51588596 51588619 -150739728 + AT_rich Low_complexity Low_complexity 1 23 0 1729 122 8 12 chr4 51590813 51591059 -150737288 - AluSx SINE Alu -16 296 52 967 98 0 8 chr4 51591139 51591272 -150737075 - FLAM_C SINE Alu -1 132 1 21 0 0 0 chr4 51591294 51591315 -150737032 + AT_rich Low_complexity Low_complexity 1 21 0 246 250 34 57 chr4 51591718 51591806 -150736541 - MER5A DNA MER1_type -31 158 73 239 257 83 28 chr4 51592256 51592400 -150735947 - L1ME2 LINE L1 -1 6163 6012 794 133 0 16 chr4 51592450 51592578 -150735769 + FLAM_C SINE Alu 1 126 -7 4859 137 172 1 chr4 51592618 51593664 -150734683 + Tigger3b DNA MER2_type 7 1231 0 234 170 75 0 chr4 51593668 51593721 -150734626 - L1ME2 LINE L1 -219 5951 5895 562 220 34 38 chr4 51593786 51593966 -150734381 - L1ME3A LINE L1 -308 5862 5688 300 272 111 72 chr4 51593973 51594153 -150734194 + L1ME LINE L1 24 210 -5860 687 263 21 11 chr4 51594746 51594932 -150733415 - L1MEd LINE L1 -5455 664 477 561 239 62 34 chr4 51594946 51595122 -150733225 + MER63A DNA MER1_type 16 196 -14 331 368 169 13 chr4 51595139 51595664 -150732683 + L2 LINE L2 2252 2892 -422 1791 106 56 81 chr4 51595664 51595984 -150732363 - AluSx SINE Alu 0 312 1 331 368 169 13 chr4 51595984 51596085 -150732262 + L2 LINE L2 2892 2976 -338 25 51 0 0 chr4 51596411 51596450 -150731897 + AT_rich Low_complexity Low_complexity 1 39 0 198 0 0 0 chr4 51598420 51598442 -150729905 + (A)n Simple_repeat Simple_repeat 1 22 0 531 168 0 0 chr4 51599655 51599756 -150728591 - MER53 DNA DNA -88 101 1 1823 133 19 16 chr4 51600221 51600543 -150727804 - MER44D DNA MER2_type 0 605 228 1034 118 7 0 chr4 51600584 51600737 -150727610 + AluSg/x SINE Alu 154 307 -5 287 146 98 98 chr4 51600835 51600917 -150727430 + FAM SINE Alu 84 165 -10 308 245 0 43 chr4 51601007 51601101 -150727246 - L1ME LINE L1 -307 5814 5725 25 31 0 0 chr4 51601172 51601204 -150727143 + AT_rich Low_complexity Low_complexity 1 32 0 390 246 25 26 chr4 51601385 51601561 -150726786 + MLT1K LTR MaLR 16 222 -366 22 0 0 0 chr4 51601580 51601602 -150726745 + AT_rich Low_complexity Low_complexity 1 22 0 262 206 87 32 chr4 51601837 51601963 -150726384 - L1P4 LINE L1 -716 5450 5318 1366 153 69 56 chr4 51602310 51602598 -150725749 - AluJb SINE Alu -20 292 1 1891 171 0 0 chr4 51602907 51603205 -150725142 - AluSx SINE Alu -14 298 1 198 297 0 0 chr4 51603725 51603762 -150724585 - L2 LINE L2 -95 3177 3141 351 274 48 32 chr4 51604451 51604575 -150723772 + MIR SINE MIR 106 231 -31 355 328 62 75 chr4 51604931 51605464 -150722883 - L1M2 LINE L1 -5759 1090 565 * 490 283 86 96 chr4 51605026 51605587 -150722760 + L1M2 LINE L1 543 1097 -5752 224 309 12 0 chr4 51607922 51608006 -150720341 + (TA)n Simple_repeat Simple_repeat 1 85 0 58 0 0 0 chr4 51608140 51608198 -150720149 + AT_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr4 51608549 51608572 -150719775 + AT_rich Low_complexity Low_complexity 1 23 0 623 312 92 8 chr4 51609147 51609397 -150718950 + L3 LINE CR1 1001 1271 -306 2396 93 0 6 chr4 51609443 51609754 -150718593 - AluSg1 SINE Alu 0 309 1 340 355 18 12 chr4 51609800 51609969 -150718378 + L3 LINE CR1 1297 1466 -111 388 283 35 21 chr4 51611371 51611516 -150716831 + MER5A DNA MER1_type 43 189 0 287 306 134 39 chr4 51611839 51612228 -150716119 - L2 LINE L2 -349 2965 2540 1731 115 37 19 chr4 51612234 51612504 -150715843 - AluSx SINE Alu 0 312 38 412 255 89 30 chr4 51612613 51612915 -150715432 - MER97c DNA MER1_type? -5 1085 766 1880 204 83 39 chr4 51613227 51613796 -150714551 - MER97a DNA MER1_type? -291 603 10 1350 299 54 11 chr4 51614680 51615124 -150713223 + L2 LINE L2 2850 3312 -1 1099 88 0 0 chr4 51615253 51615389 -150712958 + AluSq/x SINE Alu 1 136 -176 1217 188 76 50 chr4 51615398 51615549 -150712798 - AluJo SINE Alu -28 284 121 333 0 0 0 chr4 51615549 51615586 -150712761 + (TG)n Simple_repeat Simple_repeat 2 38 0 1217 188 76 50 chr4 51615586 51615711 -150712636 - AluJo SINE Alu -191 121 1 237 100 125 0 chr4 51619044 51619084 -150709263 + L2 LINE L2 3265 3309 -4 593 36 12 0 chr4 51619402 51619486 -150708861 + L1P LINE L1 5304 5388 -773 22135 166 40 21 chr4 51619662 51622545 -150705802 - L1PA10 LINE L1 0 6483 3657 2090 132 3 16 chr4 51622545 51622855 -150705492 - AluSx SINE Alu -6 306 1 22135 166 40 21 chr4 51622855 51622918 -150705429 - L1PA10 LINE L1 -2826 3657 3597 189 74 0 0 chr4 51622918 51622945 -150705402 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 22135 166 40 21 chr4 51622945 51626387 -150701960 - L1PA10 LINE L1 -2886 3597 1 1157 222 52 70 chr4 51627518 51628108 -150700239 - L1MC5 LINE L1 -430 7531 6952 1050 214 146 30 chr4 51628256 51628715 -150699632 + L1MDb LINE L1 894 1405 -5004 290 248 37 9 chr4 51628775 51628884 -150699463 - L1M LINE L1 -803 5371 5260 846 237 267 46 chr4 51629081 51629945 -150698402 + L2 LINE L2 2124 3215 -98 378 276 76 0 chr4 51629979 51630084 -150698263 + L2 LINE L2 3196 3308 -5 740 146 31 31 chr4 51630151 51630281 -150698066 + FLAM_C SINE Alu 2 131 -12 473 271 104 46 chr4 51630287 51630567 -150697780 + L1MC4a LINE L1 5600 5895 -1913 1015 81 56 44 chr4 51630747 51630907 -150697440 - FRAM SINE Alu 0 166 5 797 196 63 0 chr4 51631504 51631647 -150696700 - FRAM SINE Alu -14 152 1 2810 143 50 79 chr4 51631684 51632242 -150696105 - L1PA16 LINE L1 -9 6157 5616 2326 138 27 3 chr4 51632243 51632816 -150695531 + L1PA16 LINE L1 5024 5613 -543 194 295 16 0 chr4 51633549 51633610 -150694737 - L2 LINE L2 0 3313 3252 26 50 0 0 chr4 51634021 51634061 -150694286 + AT_rich Low_complexity Low_complexity 1 40 0 464 274 144 14 chr4 51634346 51634554 -150693793 - MIR SINE MIR 0 262 28 12240 142 119 64 chr4 51634620 51635003 -150693344 - L1 LINE L1 -3333 4232 3871 423 0 0 0 chr4 51635003 51635050 -150693297 + (TA)n Simple_repeat Simple_repeat 1 47 0 12240 142 119 64 chr4 51635050 51635702 -150692645 - L1 LINE L1 -3694 3871 3256 2343 107 0 0 chr4 51635702 51636000 -150692347 - AluSx SINE Alu -14 298 1 12240 142 119 64 chr4 51636000 51638660 -150689687 - L1 LINE L1 -4309 3256 30 2351 104 35 35 chr4 51638920 51639295 -150689052 + THE1C LTR MaLR 1 375 0 395 306 71 41 chr4 51639441 51639637 -150688710 + MIR SINE MIR 1 202 -60 528 284 103 49 chr4 51639794 51640164 -150688183 - MLT1J LTR MaLR -118 393 4 21 0 0 0 chr4 51640236 51640257 -150688090 + AT_rich Low_complexity Low_complexity 1 21 0 36 0 0 0 chr4 51640953 51640989 -150687358 + AT_rich Low_complexity Low_complexity 1 36 0 11480 23 1 0 chr4 51640989 51643016 -150685331 - L1PA4 LINE L1 -7 6148 4121 5932 29 0 0 chr4 51643018 51643704 -150684643 + L1PA4 LINE L1 3430 4115 -2031 186 67 67 22 chr4 51643816 51643861 -150684486 + T-rich Low_complexity Low_complexity 1 47 0 1940 65 62 45 chr4 51643864 51644089 -150684258 - L1MA2 LINE L1 0 6304 6071 2173 114 10 0 chr4 51644089 51644387 -150683960 - AluSx SINE Alu -11 301 1 1940 65 62 45 chr4 51644387 51644469 -150683878 - L1MA2 LINE L1 -233 6071 5992 205 374 104 9 chr4 51644666 51644781 -150683566 + L2 LINE L2 3141 3266 -6 2045 133 13 3 chr4 51644981 51645290 -150683057 - L1MB7 LINE L1 -3 6181 5870 825 238 264 45 chr4 51645567 51646432 -150681915 + L2 LINE L2 2124 3215 -98 270 273 64 36 chr4 51646466 51646576 -150681771 + L2 LINE L2 3196 3308 -5 3747 136 108 0 chr4 51646739 51647370 -150680977 + L1M1 LINE L1 70 768 -6797 1309 259 17 6 chr4 51647376 51647731 -150680616 + L1M1 LINE L1 823 1181 -6384 2841 168 37 27 chr4 51648052 51648580 -150679767 + L1MC2 LINE L1 5380 5916 -428 1849 216 106 30 chr4 51648580 51649089 -150679258 + MER44D DNA MER2_type 2 604 -1 2841 168 37 27 chr4 51649089 51649157 -150679190 + L1MC2 LINE L1 5916 5982 -362 831 170 54 28 chr4 51649415 51649608 -150678739 + MLT1B LTR MaLR 1 183 -191 495 136 0 0 chr4 51649609 51649675 -150678672 + AluSc SINE Alu 46 111 -198 413 125 0 0 chr4 51649675 51649739 -150678608 - MER9 LTR ERVK 0 511 448 243 61 0 0 chr4 51649741 51649774 -150678573 + (TCTCCC)n Simple_repeat Simple_repeat 1 33 0 5434 163 4 19 chr4 51650446 51651544 -150676803 + L1P4 LINE L1 4380 5457 -711 1550 174 80 12 chr4 51651688 51652025 -150676322 + L1MD1 LINE L1 5879 6236 -6 881 244 122 9 chr4 51652052 51652281 -150676066 - MIR SINE MIR -1 261 7 405 191 16 186 chr4 51652333 51652527 -150675820 + MER102b DNA MER1_type 181 341 0 31 26 0 0 chr4 51652587 51652625 -150675722 + AT_rich Low_complexity Low_complexity 1 38 0 256 195 0 26 chr4 51652680 51652757 -150675590 + AluS SINE Alu 2 76 -225 908 266 70 3 chr4 51653283 51653659 -150674688 + L2 LINE L2 2681 3079 -234 2095 114 7 3 chr4 51653659 51653957 -150674390 + AluSx SINE Alu 1 299 -13 1561 205 0 0 chr4 51653967 51654245 -150674102 + AluJb SINE Alu 1 278 -34 193 289 35 53 chr4 51654617 51654731 -150673616 - MIR SINE MIR -120 142 31 267 293 24 0 chr4 51655026 51655108 -150673239 + L2 LINE L2 2920 3003 -310 343 270 10 20 chr4 51655127 51655227 -150673120 - L2 LINE L2 -37 3276 3178 2243 203 45 12 chr4 51655267 51655756 -150672591 + MLT1D LTR MaLR 1 505 0 5114 33 0 0 chr4 51655901 51656499 -150671848 + L1P LINE L1 3415 4012 -2134 414 280 24 30 chr4 51656496 51656664 -150671683 - L1M4 LINE L1 -1762 4384 4218 * 894 184 52 61 chr4 51658694 51658906 -150669441 - MLT1B LTR MaLR 0 390 181 1537 110 0 0 chr4 51658922 51659122 -150669225 - AluSc SINE Alu -5 304 105 3667 72 0 4 chr4 51659122 51659581 -150668766 + MER9 LTR ERVK 2 458 -53 5558 46 0 0 chr4 51659581 51660213 -150668134 - SVA Other Other 0 1386 755 646 251 83 5 chr4 51713534 51713888 -150614459 - L1ME LINE L1 -709 5455 5078 1073 251 91 76 chr4 51713899 51714428 -150613919 + MLT1H LTR MaLR 4 540 -9 1038 190 51 11 chr4 51714428 51714702 -150613645 + L1M4 LINE L1 4381 4665 -1481 527 303 56 0 chr4 51714731 51714873 -150613474 + MER58A DNA MER1_type 1 150 0 23 0 0 0 chr4 51715729 51715752 -150612595 + AT_rich Low_complexity Low_complexity 1 23 0 327 170 0 9 chr4 51715926 51715995 -150612352 + Alu SINE Alu 1 47 -253 516 101 0 0 chr4 51717787 51717856 -150610491 - U5 snRNA snRNA -47 69 1 24 53 0 0 chr4 51718141 51718179 -150610168 + AT_rich Low_complexity Low_complexity 1 38 0 1900 151 0 13 chr4 51719630 51719935 -150608412 - AluJb SINE Alu -11 301 1 395 314 144 11 chr4 51720123 51720575 -150607772 - L1ME4a LINE L1 -60 6061 5550 443 259 93 32 chr4 51720767 51720983 -150607364 - L2 LINE L2 -31 3282 3054 638 194 8 0 chr4 51721422 51721546 -150606801 + MIR3 SINE MIR 82 206 -2 2104 94 21 3 chr4 51722145 51722432 -150605915 + AluSc SINE Alu 4 295 -14 1829 274 136 63 chr4 51723013 51723595 -150604752 + HAL1 LINE L1 55 593 -1914 360 0 0 0 chr4 51723595 51723635 -150604712 + (TG)n Simple_repeat Simple_repeat 2 41 0 1829 274 136 63 chr4 51723635 51724112 -150604235 + HAL1 LINE L1 593 1191 -1316 221 255 0 0 chr4 51724311 51724362 -150603985 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 286 303 46 0 chr4 51724441 51724550 -150603797 - L1MA9 LINE L1 -38 6274 6161 204 67 0 0 chr4 51725002 51725032 -150603315 + (A)n Simple_repeat Simple_repeat 1 30 0 682 245 112 5 chr4 51725208 51725396 -150602951 + MIR SINE MIR 28 235 -27 318 187 99 22 chr4 51725509 51725600 -150602747 + MER5A DNA MER1_type 9 106 -83 735 109 0 0 chr4 51725690 51725800 -150602547 - AluSg/x SINE Alu -13 299 190 618 289 69 10 chr4 51726735 51726939 -150601408 - MIR SINE MIR -32 230 15 31 0 0 0 chr4 51727830 51727861 -150600486 + AT_rich Low_complexity Low_complexity 1 31 0 1905 94 0 43 chr4 51729043 51729319 -150599028 - AluSc SINE Alu -45 264 1 21 36 0 0 chr4 51729368 51729396 -150598951 + AT_rich Low_complexity Low_complexity 1 28 0 201 156 0 0 chr4 51730301 51730333 -150598014 + MIR3 SINE MIR 129 160 -48 918 147 7 0 chr4 51731776 51731919 -150596428 + AluSg/x SINE Alu 160 303 -9 914 196 0 0 chr4 51732013 51732166 -150596181 - FRAM SINE Alu -24 152 1 22 0 0 0 chr4 51732373 51732395 -150595952 + AT_rich Low_complexity Low_complexity 1 22 0 2258 96 0 16 chr4 51733069 51733372 -150594975 + AluSx SINE Alu 1 298 -14 232 264 23 46 chr4 51735263 51735350 -150592997 - MIR SINE MIR -148 114 30 490 304 199 5 chr4 51735406 51735607 -150592740 + MIR SINE MIR 23 262 0 761 147 0 22 chr4 51737058 51737194 -150591153 + FLAM_C SINE Alu 1 133 0 306 0 0 0 chr4 51737422 51737456 -150590891 + (TA)n Simple_repeat Simple_repeat 2 35 0 311 0 26 0 chr4 51738490 51738529 -150589818 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 1755 142 58 0 chr4 51740385 51740660 -150587687 + AluJb SINE Alu 2 292 -20 21 57 0 0 chr4 51740951 51740986 -150587361 + AT_rich Low_complexity Low_complexity 1 35 0 282 306 14 0 chr4 51741165 51741237 -150587110 - MER112 DNA MER1_type -1 259 187 286 222 200 0 chr4 51741254 51741344 -150587003 - L2 LINE L2 -1 3312 3205 2020 127 33 0 chr4 51741698 51741997 -150586350 - AluSp SINE Alu -4 309 1 1687 193 3 3 chr4 51742209 51742509 -150585838 - AluJb SINE Alu -7 305 6 358 288 104 43 chr4 51744562 51744725 -150583622 - MER5A DNA MER1_type 0 189 17 278 303 83 48 chr4 51744861 51745006 -150583341 + L2 LINE L2 2935 3084 -188 355 280 93 47 chr4 51745308 51745501 -150582846 + MIR SINE MIR 48 249 -13 1010 280 72 28 chr4 51745638 51746109 -150582238 - L2 LINE L2 0 3313 2822 2359 103 0 0 chr4 51746284 51746594 -150581753 - AluSx SINE Alu -2 310 1 23 33 0 0 chr4 51747331 51747361 -150580986 + AT_rich Low_complexity Low_complexity 1 30 0 3316 147 14 49 chr4 51748346 51749014 -150579333 + L1MB2 LINE L1 5528 6171 0 192 239 209 0 chr4 51749110 51749177 -150579170 - MIR SINE MIR -24 238 158 490 297 68 22 chr4 51749363 51749585 -150578762 + MIR SINE MIR 13 244 -18 934 179 14 43 chr4 51749811 51750018 -150578329 + AluJo SINE Alu 1 201 -111 352 180 0 40 chr4 51750021 51750121 -150578226 + GA-rich Low_complexity Low_complexity 1 96 0 25 31 0 0 chr4 51751784 51751816 -150576531 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr4 51752100 51752125 -150576222 + AT_rich Low_complexity Low_complexity 1 25 0 1864 169 3 6 chr4 51752136 51752449 -150575898 + AluJo SINE Alu 1 312 0 1116 119 49 22 chr4 51753592 51753777 -150574570 + MER30B DNA MER1_type 1 190 0 1709 157 45 14 chr4 51753838 51754125 -150574222 + AluJo SINE Alu 1 296 -16 816 182 0 0 chr4 51754127 51754259 -150574088 - MER2 DNA MER2_type -212 133 2 748 298 171 22 chr4 51755022 51755431 -150572916 + L2 LINE L2 2844 3313 0 1768 88 0 13 chr4 51755909 51756148 -150572199 - AluSc SINE Alu -2 307 72 2277 92 3 0 chr4 51756157 51756449 -150571898 - AluSc SINE Alu -16 293 1 280 269 0 15 chr4 51756539 51756606 -150571741 + L2 LINE L2 3246 3311 -2 409 282 214 19 chr4 51757971 51758177 -150570170 + MIR SINE MIR 16 261 -1 1820 170 0 10 chr4 51758414 51758714 -150569633 + AluJo SINE Alu 1 297 -15 209 128 0 106 chr4 51760844 51760891 -150567456 + L2 LINE L2 3272 3313 0 457 240 44 87 chr4 51761442 51761671 -150566676 - MER112 DNA MER1_type -41 219 1 393 180 33 71 chr4 51762012 51762195 -150566152 + (TATATG)n Simple_repeat Simple_repeat 1 176 0 223 174 41 46 chr4 51762206 51762405 -150565942 + (TATATG)n Simple_repeat Simple_repeat 1 198 0 239 121 24 60 chr4 51762482 51762565 -150565782 + (TATATG)n Simple_repeat Simple_repeat 1 80 0 466 288 62 23 chr4 51762746 51762923 -150565424 + MLT1L LTR MaLR 93 276 -339 184 118 24 82 chr4 51763403 51763488 -150564859 + (TATATG)n Simple_repeat Simple_repeat 1 80 0 24 0 0 0 chr4 51763654 51763678 -150564669 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 51764819 51764847 -150563500 + AT_rich Low_complexity Low_complexity 1 28 0 358 337 97 29 chr4 51765347 51765800 -150562547 + L2 LINE L2 2766 3268 -4 209 224 35 17 chr4 51766115 51766173 -150562174 + L2 LINE L2 1974 2032 -1282 525 335 73 52 chr4 51766401 51767234 -150561113 + L2 LINE L2 2199 3051 -221 269 353 53 23 chr4 51767367 51767500 -150560847 + L2 LINE L2 3136 3272 0 2072 132 16 0 chr4 51768781 51769085 -150559262 + AluSx SINE Alu 1 309 -3 642 266 89 0 chr4 51769361 51769564 -150558783 + MER102a DNA MER1_type 85 305 -25 21 36 0 0 chr4 51769659 51769687 -150558660 + AT_rich Low_complexity Low_complexity 1 28 0 317 201 161 84 chr4 51770265 51770349 -150557998 - L1ME4a LINE L1 -4 6117 6041 2307 98 3 0 chr4 51770349 51770646 -150557701 + AluSx SINE Alu 1 298 -14 317 201 161 84 chr4 51770646 51770810 -150557537 - L1ME4a LINE L1 -80 6041 5850 283 281 0 35 chr4 51770831 51770945 -150557402 - L1ME4a LINE L1 -341 5780 5671 366 23 0 0 chr4 51771998 51772020 -150556327 + (CA)n Simple_repeat Simple_repeat 1 65 0 366 23 0 0 chr4 51772020 51772063 -150556284 + (CA)n Simple_repeat Simple_repeat 2 44 0 25 31 0 0 chr4 51773530 51773562 -150554785 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr4 51774471 51774507 -150553840 + AT_rich Low_complexity Low_complexity 1 36 0 383 347 62 103 chr4 51775787 51776176 -150552171 + L2 LINE L2 2898 3270 -2 202 280 144 30 chr4 51777742 51777874 -150550473 + L2 LINE L2 2343 2489 -825 272 265 44 108 chr4 51778031 51778280 -150550067 - L2 LINE L2 -176 3096 2864 1178 275 108 51 chr4 51778814 51778898 -150549449 + L2 LINE L2 2432 2510 -803 2090 132 3 0 chr4 51778898 51779201 -150549146 - AluSx SINE Alu -8 304 1 1178 275 108 51 chr4 51779201 51779895 -150548452 + L2 LINE L2 2510 3266 -47 857 145 135 40 chr4 51780684 51780884 -150547463 - MER20 DNA MER1_type 0 219 1 213 208 0 0 chr4 51782230 51782278 -150546069 + L2 LINE L2 3264 3311 -2 248 368 61 0 chr4 51785472 51785586 -150542761 + L2 LINE L2 3152 3272 0 251 266 38 13 chr4 51785682 51785761 -150542586 - MIR SINE MIR -66 142 62 24 0 0 0 chr4 51785761 51785785 -150542562 + AT_rich Low_complexity Low_complexity 1 24 0 888 209 0 17 chr4 51786257 51786434 -150541913 + FRAM SINE Alu 2 175 -1 195 139 0 0 chr4 51786485 51786521 -150541826 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr4 51787266 51787294 -150541053 + AT_rich Low_complexity Low_complexity 1 28 0 906 127 29 63 chr4 51788336 51788541 -150539806 + L1MA6 LINE L1 6102 6299 -1 21 36 0 0 chr4 51788541 51788569 -150539778 + AT_rich Low_complexity Low_complexity 1 28 0 1967 35 47 16 chr4 51789572 51789826 -150538521 - AluY SINE Alu -11 300 39 224 310 76 35 chr4 51790283 51790428 -150537919 + MIR3 SINE MIR 2 152 -56 2239 93 0 0 chr4 51791681 51791970 -150536377 - AluY SINE Alu -14 297 9 2253 114 0 7 chr4 51792148 51792454 -150535893 + AluSx SINE Alu 1 304 -8 2535 52 3 3 chr4 51792768 51793078 -150535269 - AluY SINE Alu -1 310 1 3428 60 0 9 chr4 51793732 51794183 -150534164 + L1PA7 LINE L1 5708 6154 0 277 250 288 6 chr4 51794341 51794501 -150533846 - MIR SINE MIR 0 262 58 1163 151 0 53 chr4 51795300 51795506 -150532841 - AluJo SINE Alu -14 298 104 217 284 15 0 chr4 51795589 51795656 -150532691 + GA-rich Low_complexity Low_complexity 3 70 0 21 0 0 0 chr4 51796536 51796557 -150531790 + AT_rich Low_complexity Low_complexity 1 21 0 263 182 73 0 chr4 51796691 51796746 -150531601 + L2 LINE L2 3254 3312 -1 1582 173 54 7 chr4 51797452 51797747 -150530600 - AluJo SINE Alu -1 311 3 348 312 19 32 chr4 51800318 51800472 -150527875 - MER5B DNA MER1_type 0 178 27 289 334 21 7 chr4 51801515 51801658 -150526689 + MIR SINE MIR 6 152 -56 2061 205 3 85 chr4 51802611 51803177 -150525170 + MLT2B1 LTR ERVL 1 520 0 267 301 118 27 chr4 51803200 51803359 -150524988 + L1ME LINE L1 5614 5794 -327 1982 161 27 0 chr4 51803359 51803694 -150524653 - MER2 DNA MER2_type 0 344 1 267 301 118 27 chr4 51803694 51803720 -150524627 + L1ME LINE L1 5794 5816 -305 366 245 101 14 chr4 51804012 51804151 -150524196 + HAL1b LINE L1 691 841 -507 198 209 0 0 chr4 51804200 51804243 -150524104 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 311 217 142 8 chr4 51804247 51804367 -150523980 + HAL1b LINE L1 961 1096 -252 21 0 0 0 chr4 51805570 51805591 -150522756 + AT_rich Low_complexity Low_complexity 1 21 0 1914 121 4 0 chr4 51805757 51806022 -150522325 - AluSx SINE Alu -46 266 1 298 248 121 27 chr4 51806208 51806357 -150521990 + L1MC4a LINE L1 5741 5903 -1905 294 29 0 0 chr4 51806380 51806415 -150521932 + (TG)n Simple_repeat Simple_repeat 2 36 0 1870 112 35 29 chr4 51806417 51806764 -150521583 + L1MA5A LINE L1 5940 6288 -9 213 183 61 24 chr4 51806956 51807038 -150521309 + (TTATA)n Simple_repeat Simple_repeat 1 85 0 287 255 239 21 chr4 51807210 51807398 -150520949 + HAL1 LINE L1 10 238 -2269 411 267 30 30 chr4 51807421 51807552 -150520795 - L2 LINE L2 0 3313 3183 994 286 161 30 chr4 51807655 51808214 -150520133 + HAL1 LINE L1 197 828 -1679 198 0 0 0 chr4 51809393 51809415 -150518932 + (TTA)n Simple_repeat Simple_repeat 1 22 0 239 293 158 30 chr4 51809477 51809610 -150518737 - L2 LINE L2 -8 3264 3115 1780 147 47 10 chr4 51809736 51810035 -150518312 + AluJb SINE Alu 1 310 -2 239 0 32 0 chr4 51810035 51810066 -150518281 + (TA)n Simple_repeat Simple_repeat 2 33 0 27 0 0 0 chr4 51810082 51810109 -150518238 + AT_rich Low_complexity Low_complexity 1 27 0 287 228 11 33 chr4 51810186 51810278 -150518069 + L1MC5 LINE L1 7828 7917 -44 737 186 161 40 chr4 51811999 51812127 -150516220 + MER58A DNA MER1_type 1 163 -2257 1212 191 15 0 chr4 51812127 51812389 -150515958 - L1MA4 LINE L1 -7 6293 6028 737 186 161 40 chr4 51812389 51812459 -150515888 + MER58A DNA MER1_type 163 223 -1 37 39 0 0 chr4 51813438 51813489 -150514858 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr4 51813798 51813820 -150514527 + AT_rich Low_complexity Low_complexity 1 22 0 2469 74 0 3 chr4 51813967 51814279 -150514068 - AluSq SINE Alu -2 311 1 1894 162 103 3 chr4 51814329 51814710 -150513637 + Tigger6 DNA MER2_type 2 421 -1176 2336 181 9 17 chr4 51814710 51815131 -150513216 - MER54A LTR ERVL 0 901 484 695 167 62 14 chr4 51815316 51815460 -150512887 + Tigger6 DNA MER2_type 1016 1166 -431 22 0 0 0 chr4 51815811 51815833 -150512514 + AT_rich Low_complexity Low_complexity 1 22 0 1940 160 3 3 chr4 51816635 51816947 -150511400 + AluSx SINE Alu 1 312 0 633 307 123 43 chr4 51817989 51818550 -150509797 + L2 LINE L2 1821 2426 -888 999 274 138 24 chr4 51818598 51818680 -150509667 + Charlie7 DNA MER1_type 1 72 -2540 297 0 0 0 chr4 51818680 51818713 -150509634 + (TA)n Simple_repeat Simple_repeat 2 34 0 999 274 138 24 chr4 51818713 51819049 -150509298 + Charlie7 DNA MER1_type 72 467 -2145 244 252 18 54 chr4 51819121 51819232 -150509115 + Charlie7 DNA MER1_type 1773 1879 -733 290 305 37 0 chr4 51819249 51819331 -150509016 - Charlie7 DNA MER1_type -2511 101 17 359 286 39 7 chr4 51819332 51819486 -150508861 + Charlie7 DNA MER1_type 1874 2032 -580 368 188 58 0 chr4 51819744 51819813 -150508534 + L2 LINE L2 3239 3311 -2 2137 80 3 61 chr4 51819935 51820261 -150508086 - AluSp SINE Alu -6 307 1 315 84 0 2 chr4 51820290 51820357 -150507990 + AluSp/q SINE Alu 243 304 0 459 227 21 21 chr4 51820385 51820482 -150507865 - MIR SINE MIR -148 114 18 23 33 0 0 chr4 51820496 51820526 -150507821 + AT_rich Low_complexity Low_complexity 1 30 0 242 389 44 53 chr4 51820643 51820756 -150507591 - L2 LINE L2 -32 3240 3129 494 251 74 59 chr4 51820873 51821076 -150507271 + HAL1 LINE L1 1786 1991 -516 238 304 45 9 chr4 51821792 51821904 -150506443 + LTR67 LTR ERVL 439 554 -3 29 47 0 0 chr4 51822810 51822853 -150505494 + AT_rich Low_complexity Low_complexity 1 43 0 614 242 181 14 chr4 51823075 51823290 -150505057 + MIR SINE MIR 11 261 -1 23 0 0 0 chr4 51823312 51823335 -150505012 + AT_rich Low_complexity Low_complexity 1 23 0 2073 145 0 28 chr4 51823833 51824191 -150504156 + L1MC1 LINE L1 5977 6324 -9 24 77 0 0 chr4 51824243 51824295 -150504052 + AT_rich Low_complexity Low_complexity 1 52 0 374 176 324 20 chr4 51824714 51824816 -150503531 + FLAM_A SINE Alu 1 133 0 1270 60 6 0 chr4 51824882 51825048 -150503299 + L1MA1 LINE L1 6136 6302 0 2053 123 3 0 chr4 51826423 51826715 -150501632 + AluSx SINE Alu 1 293 -19 24 0 0 0 chr4 51827407 51827431 -150500916 + AT_rich Low_complexity Low_complexity 1 24 0 216 314 49 20 chr4 51827690 51827792 -150500555 + MIR SINE MIR 42 146 -62 405 323 32 45 chr4 51829092 51829312 -150499035 + MIR SINE MIR 14 230 -32 1713 121 103 0 chr4 51829486 51829758 -150498589 + MER7A DNA MER2_type 48 345 -1 955 318 38 38 chr4 51830437 51830934 -150497413 + L2 LINE L2 2816 3312 -1 227 196 0 20 chr4 51830975 51831026 -150497321 - L2 LINE L2 -295 2977 2928 2227 168 49 9 chr4 51831026 51831473 -150496874 + MLT1C LTR MaLR 1 465 -2 452 264 120 6 chr4 51832179 51832346 -150496001 + L1MEc LINE L1 40 225 -6171 2103 93 0 48 chr4 51832672 51832985 -150495362 + AluSx SINE Alu 1 298 -14 27 73 0 0 chr4 51834874 51834929 -150493418 + AT_rich Low_complexity Low_complexity 1 55 0 1943 145 7 7 chr4 51836034 51836331 -150492016 + AluJb SINE Alu 1 297 -15 317 272 70 0 chr4 51837258 51837372 -150490975 + L1MC3 LINE L1 6526 6647 -1138 551 133 54 6 chr4 51837376 51837542 -150490805 + (TA)n Simple_repeat Simple_repeat 1 174 0 345 323 98 0 chr4 51837570 51837734 -150490613 - L1MC/D LINE L1 -2019 5789 5610 1326 120 10 24 chr4 51837770 51837979 -150490368 + MER2 DNA MER2_type 1 206 -139 23 68 0 0 chr4 51837982 51838026 -150490321 + AT_rich Low_complexity Low_complexity 1 44 0 283 106 0 0 chr4 51838033 51838080 -150490267 - L1MA3 LINE L1 0 6305 6259 844 282 29 11 chr4 51838149 51838422 -150489925 - L1MC/D LINE L1 -1306 4840 4563 310 276 90 21 chr4 51838497 51838642 -150489705 + L1ME LINE L1 5386 5540 -622 438 152 10 135 chr4 51838662 51838773 -150489574 + MER34 LTR ERV1 1 97 -448 395 197 25 92 chr4 51838764 51838936 -150489411 + MER34B LTR ERV1 242 385 -157 * 277 233 11 44 chr4 51839018 51839108 -150489239 + MER34 LTR ERV1 456 542 0 1313 192 110 47 chr4 51839108 51839184 -150489163 + MER44D DNA MER2_type 1 71 -2420 333 68 0 0 chr4 51839184 51839228 -150489119 + (TG)n Simple_repeat Simple_repeat 1 44 0 1313 192 110 47 chr4 51839228 51839277 -150489070 + MER44D DNA MER2_type 71 115 -2376 2198 77 6 48 chr4 51839277 51839590 -150488757 - AluY SINE Alu -11 300 1 1313 192 110 47 chr4 51839590 51839694 -150488653 + MER44D DNA MER2_type 115 211 -2280 2221 116 52 3 chr4 51839694 51840038 -150488309 - MER46B DNA MER2_type 0 236 1 1313 192 110 47 chr4 51840038 51840124 -150488223 + MER44D DNA MER2_type 211 608 -1 210 184 26 0 chr4 51840273 51840311 -150488036 - MIR SINE MIR -58 150 112 2163 118 3 0 chr4 51840375 51840672 -150487675 + AluSx SINE Alu 1 298 -14 2203 126 0 0 chr4 51841141 51841451 -150486896 + AluSx SINE Alu 1 310 -2 333 0 0 0 chr4 51841778 51841815 -150486532 + (TA)n Simple_repeat Simple_repeat 2 38 0 287 228 11 33 chr4 51841935 51842027 -150486320 + L1MC5 LINE L1 7828 7917 -44 228 156 52 26 chr4 51842224 51842301 -150486046 + (TA)n Simple_repeat Simple_repeat 2 80 0 287 342 99 42 chr4 51843022 51843516 -150484831 + L2 LINE L2 2157 2678 -636 468 235 68 130 chr4 51844196 51844519 -150483828 + L2 LINE L2 3011 3313 0 841 305 122 56 chr4 51844528 51845219 -150483128 - L2 LINE L2 -167 3146 2394 21 0 0 0 chr4 51845954 51845975 -150482372 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 51846431 51846458 -150481889 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr4 51847474 51847500 -150480847 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 51847531 51847552 -150480795 + AT_rich Low_complexity Low_complexity 1 21 0 5752 56 1 0 chr4 51848084 51848801 -150479546 + L1PA7 LINE L1 5434 6151 -3 5727 176 55 3 chr4 51848873 51850492 -150477855 + L1MC2 LINE L1 4627 6336 -8 29 0 0 0 chr4 51851046 51851075 -150477272 + AT_rich Low_complexity Low_complexity 1 29 0 298 218 83 143 chr4 51851107 51851240 -150477107 + MER63 DNA MER1_type 2 752 -310 313 301 149 42 chr4 51851581 51851870 -150476477 - L1M4 LINE L1 -1092 5054 4735 274 304 104 24 chr4 51852530 51852655 -150475692 + MIR3 SINE MIR 26 160 -48 458 280 67 89 chr4 51853302 51853634 -150474713 + L1M4 LINE L1 4265 4581 -1565 2243 92 7 0 chr4 51853634 51853927 -150474420 - AluSp SINE Alu -18 295 1 458 280 67 89 chr4 51853927 51854050 -150474297 + L1M4 LINE L1 4581 4705 -1441 207 0 0 0 chr4 51854362 51854385 -150473962 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 290 270 64 31 chr4 51854623 51854810 -150473537 + L1M4 LINE L1 5259 5464 -714 279 0 0 0 chr4 51854810 51854841 -150473506 + (TA)n Simple_repeat Simple_repeat 1 31 0 290 270 64 31 chr4 51854841 51854989 -150473358 + L1M4 LINE L1 5464 5606 -572 518 209 35 26 chr4 51855289 51855404 -150472943 + MER5B DNA MER1_type 63 178 0 22 35 0 0 chr4 51857185 51857214 -150471133 + AT_rich Low_complexity Low_complexity 1 29 0 182 306 16 32 chr4 51857751 51857813 -150470534 + L2 LINE L2 3251 3311 -2 392 306 169 14 chr4 51857894 51858200 -150470147 + L2 LINE L2 2702 3049 -264 987 168 105 3 chr4 51858333 51858684 -150469663 + L1MB7 LINE L1 5751 6184 0 23 78 0 0 chr4 51859700 51859751 -150468596 + AT_rich Low_complexity Low_complexity 1 51 0 198 350 121 42 chr4 51859992 51860298 -150468049 - L2 LINE L2 -16 3256 2927 501 160 160 19 chr4 51860792 51860898 -150467449 - FRAM SINE Alu -38 138 18 522 87 8 63 chr4 51860899 51861026 -150467321 + (TG)n Simple_repeat Simple_repeat 2 121 0 638 189 0 0 chr4 51861045 51861156 -150467191 - FLAM_C SINE Alu -31 112 2 185 218 0 73 chr4 51861564 51861619 -150466728 - L3 LINE CR1 -943 634 584 304 309 111 16 chr4 51862517 51862643 -150465704 + MIR SINE MIR 23 160 -102 369 86 0 0 chr4 51863483 51863541 -150464806 + (CAG)n Simple_repeat Simple_repeat 1 58 0 26 0 0 0 chr4 51863913 51863939 -150464408 + AT_rich Low_complexity Low_complexity 1 26 0 268 116 84 0 chr4 51865321 51865416 -150462931 + (TA)n Simple_repeat Simple_repeat 1 103 0 259 178 37 9 chr4 51865493 51865600 -150462747 + (TA)n Simple_repeat Simple_repeat 1 110 0 260 194 89 16 chr4 51865600 51865724 -150462623 + (TATATG)n Simple_repeat Simple_repeat 3 135 0 280 176 67 0 chr4 51865724 51865889 -150462458 + (TA)n Simple_repeat Simple_repeat 2 177 0 384 131 66 24 chr4 51865920 51866270 -150462077 + (TA)n Simple_repeat Simple_repeat 1 364 0 396 101 28 73 chr4 51866270 51866449 -150461898 + (TATATG)n Simple_repeat Simple_repeat 1 171 0 237 167 115 0 chr4 51866449 51866527 -150461820 + L1MCa LINE L1 1993 2079 -4347 25 0 0 0 chr4 51866527 51866552 -150461795 + AT_rich Low_complexity Low_complexity 1 25 0 943 202 0 0 chr4 51866974 51867152 -150461195 - AluJo SINE Alu -15 297 120 180 0 0 0 chr4 51867154 51867174 -150461173 + (T)n Simple_repeat Simple_repeat 1 20 0 1370 161 14 65 chr4 51868259 51868551 -150459796 + AluJb SINE Alu 1 277 -35 216 0 0 0 chr4 51868552 51868576 -150459771 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1900 151 0 10 chr4 51868868 51869167 -150459180 + AluSx SINE Alu 1 296 -16 1200 111 0 0 chr4 51869179 51869359 -150458988 + (GAA)n Simple_repeat Simple_repeat 1 180 0 207 0 0 0 chr4 51869372 51869395 -150458952 + (CAG)n Simple_repeat Simple_repeat 2 24 0 896 140 202 88 chr4 51869395 51869667 -150458680 + L1MC3 LINE L1 6760 7062 -723 1719 180 27 12 chr4 51869682 51870015 -150458332 + MER68 LTR ERV1 7 344 -218 2774 192 34 12 chr4 51870016 51870600 -150457747 + L1MC3 LINE L1 7189 7785 0 625 291 61 5 chr4 51870610 51870823 -150457524 + L1MEc LINE L1 34 258 -6138 1271 259 74 85 chr4 51870835 51871549 -150456798 + L1MEc LINE L1 541 1244 -5152 1253 184 111 8 chr4 51871549 51871810 -150456537 + AluJo SINE Alu 4 291 -21 1271 259 74 85 chr4 51871810 51872026 -150456321 + L1MEc LINE L1 1244 1461 -4935 837 148 0 7 chr4 51872038 51872173 -150456174 + FLAM_C SINE Alu 7 140 -3 2062 254 45 21 chr4 51872187 51872722 -150455625 + L1MEc LINE L1 1538 2097 -4299 198 0 0 0 chr4 51872722 51872744 -150455603 + (TTTAA)n Simple_repeat Simple_repeat 2 23 0 2062 254 45 21 chr4 51872744 51872935 -150455412 + L1MEc LINE L1 2097 2282 -4114 1996 14 0 0 chr4 51872964 51873186 -150455161 + AluY SINE Alu 83 304 -7 206 326 96 7 chr4 51873260 51873395 -150454952 - L2 LINE L2 -142 3171 3025 233 302 21 31 chr4 51875106 51875202 -150453145 + MER94 DNA DNA 39 133 -1 2091 100 3 21 chr4 51875468 51875803 -150452544 + AluSx SINE Alu 1 330 0 236 273 15 15 chr4 51875998 51876064 -150452283 + MER5A DNA MER1_type 123 188 -1 28 0 0 0 chr4 51876513 51876541 -150451806 + AT_rich Low_complexity Low_complexity 1 28 0 197 347 56 0 chr4 51876836 51876908 -150451439 - MIR3 SINE MIR -24 184 109 201 379 0 0 chr4 51876938 51876996 -150451351 - L2 LINE L2 -10 3262 3205 2079 132 0 0 chr4 51877041 51877336 -150451011 - AluSx SINE Alu -17 295 1 1052 217 14 5 chr4 51877420 51877641 -150450706 + MER58A DNA MER1_type 2 224 0 465 108 0 24 chr4 51877716 51877799 -150450548 + Alu SINE Alu 230 310 0 265 274 105 24 chr4 51877958 51878082 -150450265 - L2 LINE L2 -3 3310 3177 56 33 0 49 chr4 51878922 51879044 -150449303 + AT_rich Low_complexity Low_complexity 1 116 0 25 65 0 0 chr4 51879078 51879124 -150449223 + AT_rich Low_complexity Low_complexity 1 46 0 24 85 0 0 chr4 51879284 51879343 -150449004 + AT_rich Low_complexity Low_complexity 1 59 0 5891 94 17 46 chr4 51879344 51879545 -150448802 - L1MA3 LINE L1 -1 6304 6099 2093 118 4 0 chr4 51879545 51879824 -150448523 + AluSx SINE Alu 6 285 -27 306 73 0 0 chr4 51879824 51879865 -150448482 + (TA)n Simple_repeat Simple_repeat 2 42 0 5891 94 17 46 chr4 51879865 51880606 -150447741 - L1MA3 LINE L1 -204 6101 5388 2080 117 3 13 chr4 51880774 51881092 -150447255 + AluSq SINE Alu 1 313 0 1287 101 0 0 chr4 51881092 51881271 -150447076 + AluSg/x SINE Alu 132 310 0 882 222 0 0 chr4 51882770 51882937 -150445410 - FAM SINE Alu -5 170 4 21 57 0 0 chr4 51883442 51883477 -150444870 + AT_rich Low_complexity Low_complexity 1 35 0 2153 61 0 0 chr4 51883884 51884146 -150444201 + AluY SINE Alu 41 302 -9 890 75 0 0 chr4 51884429 51884549 -150443798 - AluY SINE Alu -5 306 187 2879 133 227 61 chr4 51884549 51885877 -150442470 + pTR5 LTR ERV1 745 2606 0 1471 59 0 50 chr4 51885877 51886079 -150442268 - AluY SINE Alu -119 192 1 2376 85 0 0 chr4 51886800 51887094 -150441253 - AluSx SINE Alu -13 299 6 832 75 0 9 chr4 51887499 51887605 -150440742 + AluSc SINE Alu 1 105 -204 341 86 0 0 chr4 51887674 51887732 -150440615 + L1P LINE L1 4980 5037 -1109 1429 96 0 5 chr4 51887732 51887920 -150440427 + AluSc SINE Alu 117 303 -6 21 36 0 0 chr4 51888001 51888029 -150440318 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr4 51888259 51888297 -150440050 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr4 51888539 51888565 -150439782 + AT_rich Low_complexity Low_complexity 1 26 0 333 365 93 18 chr4 51888772 51888892 -150439455 + L1MC4a LINE L1 5481 5591 -2217 1922 102 38 6 chr4 51888892 51889206 -150439141 + L1MA5A LINE L1 5964 6287 -10 333 365 93 18 chr4 51889206 51889417 -150438930 + L1MC4a LINE L1 5591 5837 -1971 7097 54 3 2 chr4 51891649 51892818 -150435529 + L1PA7 LINE L1 4980 6154 0 192 192 68 123 chr4 51893536 51893609 -150434738 - L2 LINE L2 -1 3312 3244 228 239 87 33 chr4 51893676 51893768 -150434579 + LTR16A LTR ERVL 273 369 -81 856 198 59 66 chr4 51894344 51894799 -150433548 - L1MC5 LINE L1 -36 7925 7474 2145 71 57 4 chr4 51895149 51895429 -150432918 - AluSq SINE Alu -18 295 1 226 272 98 33 chr4 51896985 51897077 -150431270 + L3 LINE CR1 370 467 -1110 295 340 42 60 chr4 51897236 51897451 -150430896 + L3 LINE CR1 1350 1560 -17 26 0 0 0 chr4 51897992 51898018 -150430329 + AT_rich Low_complexity Low_complexity 1 26 0 2277 112 7 3 chr4 51898047 51898351 -150429996 - AluSx SINE Alu -7 305 1 395 227 154 0 chr4 51898971 51899081 -150429266 - L2 LINE L2 -2 3311 3185 2462 59 0 34 chr4 51899272 51899593 -150428754 - AluY SINE Alu -1 310 1 188 189 27 0 chr4 51900305 51900342 -150428005 - MIR SINE MIR -156 106 69 619 292 29 17 chr4 51900542 51900782 -150427565 + L1ME LINE L1 5572 5814 -307 512 195 93 0 chr4 51900908 51901026 -150427321 + MIR SINE MIR 119 247 -15 230 235 0 29 chr4 51901085 51901153 -150427194 - L1ME4a LINE L1 -65 6056 5991 21 0 0 0 chr4 51901256 51901277 -150427070 + AT_rich Low_complexity Low_complexity 1 21 0 408 308 36 55 chr4 51901662 51901775 -150426572 + MIR SINE MIR 3 117 -145 1998 148 27 0 chr4 51901775 51902073 -150426274 - AluSx SINE Alu -6 306 1 408 308 36 55 chr4 51902073 51902212 -150426135 + MIR SINE MIR 117 250 -12 371 296 16 0 chr4 51902277 51902402 -150425945 - L1ME4a LINE L1 -387 5734 5608 278 290 124 12 chr4 51902707 51902876 -150425471 + L1MC5 LINE L1 7701 7888 -73 24 53 0 0 chr4 51903649 51903687 -150424660 + AT_rich Low_complexity Low_complexity 1 38 0 2046 134 10 0 chr4 51903693 51903985 -150424362 - AluSx SINE Alu -17 295 1 1545 188 41 4 chr4 51904178 51904477 -150423870 + AluJb SINE Alu 1 309 0 21 0 0 0 chr4 51904873 51904894 -150423453 + AT_rich Low_complexity Low_complexity 1 21 0 6704 83 4 0 chr4 51904995 51906087 -150422260 + L1PA8 LINE L1 5068 6163 -9 459 0 0 0 chr4 51906234 51906285 -150422062 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 1671 126 122 0 chr4 51906885 51907147 -150421200 - AluSx SINE Alu -18 294 1 266 250 112 9 chr4 51908360 51908476 -150419871 - MIR SINE MIR -15 247 120 183 263 53 35 chr4 51909417 51909474 -150418873 - L2 LINE L2 -29 3243 3186 2123 116 7 16 chr4 51909909 51910219 -150418128 + AluJo SINE Alu 1 307 -5 2512 96 0 0 chr4 51911562 51911874 -150416473 + AluSx SINE Alu 1 312 0 2250 68 51 3 chr4 51911883 51912179 -150416168 + AluY SINE Alu 2 311 0 232 338 86 46 chr4 51912524 51912675 -150415672 - L2 LINE L2 -562 2752 2596 358 256 53 30 chr4 51912721 51912854 -150415493 + L2 LINE L2 2588 2723 -591 * 575 384 67 34 chr4 51912851 51913268 -150415079 + L2 LINE L2 2840 3270 -2 925 226 85 92 chr4 51913581 51913919 -150414428 + L1MC4a LINE L1 5258 5594 -2214 1858 134 17 17 chr4 51913919 51914055 -150414292 + AluSx SINE Alu 1 136 -176 2462 79 0 0 chr4 51914055 51914360 -150413987 + AluSq SINE Alu 1 305 -8 1858 134 17 17 chr4 51914360 51914521 -150413826 + AluSx SINE Alu 135 298 -14 925 226 85 92 chr4 51914521 51914629 -150413718 + L1MC4a LINE L1 5594 5701 -2107 604 266 60 0 chr4 51914710 51914909 -150413438 + L1MC4a LINE L1 5717 5927 -1881 2118 125 14 0 chr4 51915233 51915521 -150412826 - AluSx SINE Alu -20 292 1 1096 222 72 102 chr4 51915521 51915586 -150412761 + MLT1F1 LTR MaLR 67 132 -435 2539 143 45 13 chr4 51915586 51916054 -150412293 + L1MB3 LINE L1 5693 6175 -8 1096 222 72 102 chr4 51916054 51916505 -150411842 + MLT1F1 LTR MaLR 132 567 0 21 0 0 0 chr4 51916574 51916595 -150411752 + AT_rich Low_complexity Low_complexity 1 21 0 423 233 0 0 chr4 51916635 51916721 -150411626 + L1ME LINE L1 5628 5713 -449 596 230 27 16 chr4 51916741 51916928 -150411419 + L1MC5 LINE L1 7713 7901 -60 2263 109 0 0 chr4 51917205 51917508 -150410839 - AluY SINE Alu -8 303 1 1144 162 44 105 chr4 51917539 51917667 -150410680 + AluSx SINE Alu 20 154 -158 246 32 0 0 chr4 51917667 51917698 -150410649 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1144 162 44 105 chr4 51917698 51917865 -150410482 + AluSx SINE Alu 154 297 -15 343 275 14 36 chr4 51917876 51918014 -150410333 + L1MC/D LINE L1 5605 5739 -2069 1578 193 0 4 chr4 51918017 51918281 -150410066 - AluJo SINE Alu -49 263 1 2539 55 7 0 chr4 51918298 51918607 -150409740 - AluY SINE Alu 0 311 1 242 336 105 21 chr4 51919054 51919197 -150409150 - MIR3 SINE MIR -37 171 17 1453 148 67 10 chr4 51920177 51920475 -150407872 + L1MB7 LINE L1 5574 5888 -296 * 7742 55 2 8 chr4 51920462 51921487 -150406860 + L1P LINE L1 1 1019 -5127 1039 132 96 0 chr4 51921587 51921754 -150406593 + AluSp SINE Alu 131 313 0 928 224 157 0 chr4 51922024 51922279 -150406068 - L2 LINE L2 -1091 2223 1929 2613 144 44 2 chr4 51922379 51922830 -150405517 - L1MC1 LINE L1 -18 6315 5846 198 0 0 0 chr4 51922843 51922865 -150405482 + (TTA)n Simple_repeat Simple_repeat 2 23 0 221 244 0 0 chr4 51923376 51923417 -150404930 + polypyrimidine Low_complexity Low_complexity 2 42 0 995 151 11 6 chr4 51923425 51923604 -150404743 - L1MB7 LINE L1 -8 6176 5997 241 146 0 0 chr4 51923718 51923759 -150404588 - MLT2D LTR ERVL -7 407 367 1610 149 102 3 chr4 51923836 51924158 -150404189 - MLT2D LTR ERVL -60 354 1 351 304 122 14 chr4 51924188 51924336 -150404011 + MIR3 SINE MIR 16 179 -29 888 168 0 14 chr4 51924635 51924778 -150403569 + FLAM_C SINE Alu 3 143 0 2897 143 58 54 chr4 51924889 51924944 -150403403 - L1MC1 LINE L1 -436 5897 5844 1628 171 25 14 chr4 51924944 51925120 -150403227 - AluJb SINE Alu 0 316 134 1943 144 10 0 chr4 51925120 51925412 -150402935 - AluY SINE Alu -16 295 1 1628 171 25 14 chr4 51925412 51925548 -150402799 - AluJb SINE Alu -182 134 1 2897 143 58 54 chr4 51925548 51926079 -150402268 - L1MC1 LINE L1 -489 5844 5306 2421 102 0 0 chr4 51926079 51926384 -150401963 + AluSx SINE Alu 1 305 -7 2897 143 58 54 chr4 51926384 51926551 -150401796 - L1MC1 LINE L1 -1027 5306 5141 1676 179 64 14 chr4 51926553 51926910 -150401437 - MSTC LTR MaLR 0 428 54 189 360 0 27 chr4 51927212 51927287 -150401060 - L2 LINE L2 -375 2897 2825 5200 34 2 2 chr4 51927376 51927996 -150400351 + L1PA5 LINE L1 5535 6154 0 2242 73 73 0 chr4 51928515 51928804 -150399543 + AluY SINE Alu 1 310 -1 559 250 217 27 chr4 51928811 51929258 -150399089 + MLT1G LTR MaLR 14 582 -13 22 35 0 0 chr4 51929674 51929703 -150398644 + AT_rich Low_complexity Low_complexity 1 29 0 2102 134 0 0 chr4 51930194 51930486 -150397861 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr4 51930489 51930510 -150397837 + AT_rich Low_complexity Low_complexity 1 21 0 307 345 28 0 chr4 51930516 51930658 -150397689 + MLT1J LTR MaLR 17 162 -349 1006 290 100 30 chr4 51930887 51931485 -150396862 - L2 LINE L2 -27 3286 2634 1757 208 0 10 chr4 51932081 51932394 -150395953 + AluJo SINE Alu 1 310 -2 2053 164 0 0 chr4 51932409 51932721 -150395626 + AluJb SINE Alu 1 312 0 936 259 113 0 chr4 51932753 51933019 -150395328 - L2 LINE L2 -691 2623 2328 342 246 313 5 chr4 51933029 51933253 -150395094 - MLT1L LTR MaLR -206 409 117 216 286 45 68 chr4 51933336 51933469 -150394878 - L2 LINE L2 -2585 729 600 231 303 260 10 chr4 51933598 51933898 -150394449 + HAL1 LINE L1 1528 1902 -605 372 272 142 51 chr4 51934002 51934256 -150394091 + MLT1L LTR MaLR 1 277 -338 34062 36 1 10 chr4 51934369 51939588 -150388759 + L1PA3 LINE L1 984 6154 -1 1422 165 16 53 chr4 51939592 51939851 -150388496 + L1MB8 LINE L1 5861 6107 -71 1633 201 3 3 chr4 51939851 51940144 -150388203 - AluJo SINE Alu -19 293 1 1422 165 16 53 chr4 51940144 51940205 -150388142 + L1MB8 LINE L1 6107 6169 -9 258 211 103 103 chr4 51941685 51941841 -150386506 + MIR SINE MIR 97 252 -10 2321 102 0 0 chr4 51942173 51942467 -150385880 + AluSc SINE Alu 1 294 -15 1502 133 28 59 chr4 51942477 51942519 -150385828 - L1MB3 LINE L1 -28 6155 6113 2132 126 3 7 chr4 51942519 51942828 -150385519 + AluSg SINE Alu 1 308 -2 1502 133 28 59 chr4 51942828 51943109 -150385238 - L1MB3 LINE L1 -70 6113 5842 281 272 79 18 chr4 51943264 51943378 -150384969 - MIR SINE MIR -30 232 112 206 252 55 63 chr4 51943404 51943531 -150384816 + L2 LINE L2 3081 3206 -107 878 128 30 8 chr4 51943685 51943818 -150384529 + AluJo SINE Alu 1 136 -176 2125 102 3 3 chr4 51943958 51944242 -150384105 - AluSx SINE Alu -28 284 1 964 264 151 71 chr4 51945407 51945433 -150382914 + L2 LINE L2 2317 2339 -974 1944 148 0 0 chr4 51945433 51945745 -150382602 - AluJb SINE Alu 0 312 1 964 264 151 71 chr4 51945745 51946106 -150382241 + L2 LINE L2 2339 2670 -643 1721 181 0 20 chr4 51946106 51946238 -150382109 + AluJo SINE Alu 1 134 -178 272 27 27 0 chr4 51946238 51946275 -150382072 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1721 181 0 20 chr4 51946275 51946440 -150381907 + AluJo SINE Alu 134 292 -20 964 264 151 71 chr4 51946440 51946966 -150381381 + L2 LINE L2 2670 3312 -1 3200 119 30 22 chr4 51947742 51948278 -150380069 + MER44D DNA MER2_type 10 604 -1 423 208 67 83 chr4 51948566 51948686 -150379661 + MLT1I LTR MaLR 32 143 -266 2256 96 0 0 chr4 51948702 51949009 -150379338 + AluSx SINE Alu 1 307 0 379 188 10 42 chr4 51949131 51949227 -150379120 + MLT1I LTR MaLR 317 409 0 5741 131 112 87 chr4 51949516 51951049 -150377298 + L1MCa LINE L1 4 1573 -4853 13746 135 28 24 chr4 51951057 51953576 -150374771 + L1P LINE L1 11 2539 -3607 6903 67 1 2 chr4 51953576 51955242 -150373105 + L1PA7 LINE L1 4480 6154 0 3454 162 33 56 chr4 51955257 51955296 -150373051 + L1MCa LINE L1 1603 1641 -4785 2318 105 3 6 chr4 51955296 51955609 -150372738 + AluSx SINE Alu 1 312 0 3454 162 33 56 chr4 51955609 51956964 -150371383 + L1MCa LINE L1 1641 3026 -3400 1399 18 0 0 chr4 51956982 51957149 -150371198 - L1HS LINE L1 -1131 5015 4849 * 7651 12 0 0 chr4 51957147 51958287 -150370060 + L1HS LINE L1 5016 6155 0 6208 204 34 102 chr4 51958294 51958870 -150369477 + L1MCa LINE L1 3042 3656 -2770 2437 100 0 0 chr4 51958870 51959180 -150369167 + AluSx SINE Alu 1 310 -2 6208 204 34 102 chr4 51959180 51959300 -150369047 + L1MCa LINE L1 3656 3783 -2643 1952 110 79 3 chr4 51959300 51959590 -150368757 + AluSx SINE Alu 1 312 0 6208 204 34 102 chr4 51959590 51960819 -150367528 + L1MCa LINE L1 3783 5095 -1331 1538 188 3 28 chr4 51960819 51961106 -150367241 - AluJo SINE Alu -30 282 3 6208 204 34 102 chr4 51961106 51961421 -150366926 + L1MCa LINE L1 5095 5098 -1328 2113 132 0 0 chr4 51961421 51961724 -150366623 + AluSx SINE Alu 1 303 -9 6208 204 34 102 chr4 51961724 51961974 -150366373 + L1MCa LINE L1 5098 5364 -1062 534 247 14 74 chr4 51962900 51963196 -150365151 + L1MC4 LINE L1 7759 8036 -6 230 140 0 18 chr4 51963828 51963885 -150364462 - L1MB8 LINE L1 0 6178 6123 1850 181 60 59 chr4 51963891 51964420 -150363927 - L1M4 LINE L1 -826 5320 4791 2790 173 108 9 chr4 51964429 51965059 -150363288 - L1MB5 LINE L1 0 6174 5483 1913 102 92 18 chr4 51965062 51965346 -150363001 - AluSx SINE Alu -7 305 1 941 337 111 37 chr4 51965354 51966049 -150362298 - L3 LINE CR1 -473 1104 359 1663 185 7 7 chr4 51966355 51966653 -150361694 + AluJo SINE Alu 1 298 -14 1764 166 0 0 chr4 51967081 51967352 -150360995 + AluJo SINE Alu 12 282 -30 10606 40 0 0 chr4 51967569 51969648 -150358699 + L1PA5 LINE L1 4057 6154 0 803 157 162 10 chr4 51969809 51970006 -150358341 - MLT1D LTR MaLR 0 505 279 838 134 7 34 chr4 51970006 51970155 -150358192 - AluJo SINE Alu -167 145 1 741 181 32 74 chr4 51970158 51970374 -150357973 - MLT1D LTR MaLR -298 207 1 218 205 192 122 chr4 51970375 51970531 -150357816 - MIR SINE MIR -40 222 56 904 112 0 8 chr4 51970572 51970697 -150357650 - AluSg/x SINE Alu -18 294 171 953 193 66 88 chr4 51970712 51971074 -150357273 - L1M4 LINE L1 -1774 4372 4019 2014 127 0 3 chr4 51971074 51971382 -150356965 - AluSx SINE Alu 0 307 1 390 21 0 0 chr4 51971408 51971455 -150356892 + (TG)n Simple_repeat Simple_repeat 2 48 0 2232 156 48 88 chr4 51971721 51972323 -150356024 + MER7C DNA MER2_type 14 591 -11 1034 238 40 13 chr4 51972339 51972642 -150355705 + MLT1A1 LTR MaLR 55 365 0 207 0 0 0 chr4 51973511 51973534 -150354813 + (A)n Simple_repeat Simple_repeat 1 23 0 1886 150 0 26 chr4 51973583 51973890 -150354457 + AluJo SINE Alu 1 299 -13 5084 170 64 31 chr4 51974054 51974302 -150354045 + L1MA9 LINE L1 4000 4238 -2074 1863 142 0 4 chr4 51974302 51974600 -150353747 + AluSx SINE Alu 12 308 0 5084 170 64 31 chr4 51974600 51974651 -150353696 + L1MA9 LINE L1 4238 4286 -2026 1730 176 0 7 chr4 51974651 51974964 -150353383 + AluJo SINE Alu 1 311 0 5084 170 64 31 chr4 51974964 51975254 -150353093 + L1MA9 LINE L1 4286 4565 -1747 2185 116 0 0 chr4 51975254 51975547 -150352800 - AluSg SINE Alu -17 293 1 5084 170 64 31 chr4 51975547 51976624 -150351723 + L1MA9 LINE L1 4565 5732 -580 311 230 22 30 chr4 51977191 51977326 -150351021 - L1MC5 LINE L1 -910 7051 6918 226 75 100 0 chr4 51977381 51977461 -150350886 + (TA)n Simple_repeat Simple_repeat 2 89 0 1982 137 129 26 chr4 51977465 51977853 -150350494 - MSTA LTR MaLR 0 428 1 1562 132 30 20 chr4 51977858 51978153 -150350194 + L1MA9 LINE L1 5783 6080 -232 695 282 53 25 chr4 51978499 51978818 -150349529 + Charlie7 DNA MER1_type 208 535 -2077 700 190 24 79 chr4 51978831 51978927 -150349420 + L1MD2 LINE L1 5022 5122 -1035 2024 117 42 0 chr4 51978927 51979210 -150349137 + AluSg SINE Alu 1 295 -15 700 190 24 79 chr4 51979210 51979253 -150349094 + L1MD2 LINE L1 5122 5166 -991 1725 162 14 20 chr4 51979253 51979549 -150348798 + AluJo SINE Alu 1 294 -18 700 190 24 79 chr4 51979549 51979726 -150348621 + L1MD2 LINE L1 5166 5316 -841 2717 193 77 73 chr4 51979749 51980662 -150347685 + L1MD2 LINE L1 5411 6326 -33 259 214 175 31 chr4 51980668 51980828 -150347519 + Charlie7 DNA MER1_type 2285 2421 -191 2411 93 3 0 chr4 51980828 51981138 -150347209 - AluSp SINE Alu 0 313 3 259 214 175 31 chr4 51981138 51981234 -150347113 + Charlie7 DNA MER1_type 2421 2578 -34 201 286 63 0 chr4 51981456 51981519 -150346828 + MIR3 SINE MIR 118 184 -24 574 176 0 0 chr4 51982702 51982804 -150345543 + AluJb SINE Alu 196 297 -15 225 0 0 0 chr4 51983083 51983108 -150345239 + (A)n Simple_repeat Simple_repeat 1 25 0 316 161 16 0 chr4 51983351 51983413 -150344934 + HsTC2 DNA Tc2 1227 1289 -609 1591 165 32 29 chr4 51984056 51984335 -150344012 + AluJo SINE Alu 10 289 -23 579 164 47 23 chr4 51984468 51984696 -150343651 + L1MB7 LINE L1 5915 6183 -1 2142 107 10 7 chr4 51984950 51985248 -150343099 - AluSx SINE Alu -13 299 1 249 108 0 0 chr4 51986447 51986484 -150341863 + (A)n Simple_repeat Simple_repeat 1 37 0 849 141 0 22 chr4 51986556 51986691 -150341656 - FLAM_C SINE Alu -1 132 1 25 31 0 0 chr4 51987228 51987260 -150341087 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 51987768 51987789 -150340558 + AT_rich Low_complexity Low_complexity 1 21 0 1055 170 5 50 chr4 51988308 51988526 -150339821 + AluJo SINE Alu 1 208 -104 22 88 0 0 chr4 51989906 51989963 -150338384 + GC_rich Low_complexity Low_complexity 1 57 0 1806 131 4 4 chr4 51992995 51993263 -150335084 + AluSx SINE Alu 1 268 -44 351 0 0 0 chr4 51993274 51993313 -150335034 + (CA)n Simple_repeat Simple_repeat 1 39 0 2306 91 0 16 chr4 51993399 51993706 -150334641 + AluSx SINE Alu 3 304 -8 2139 102 14 0 chr4 51993894 51994187 -150334160 + AluSp SINE Alu 1 297 -16 734 186 0 9 chr4 51994353 51994466 -150333881 + FLAM_A SINE Alu 5 116 -17 1627 191 7 30 chr4 51995667 51995971 -150332376 + AluJo SINE Alu 1 297 -15 707 168 15 23 chr4 51995971 51996096 -150332251 + AluJb SINE Alu 174 297 -15 2167 116 3 0 chr4 51996239 51996533 -150331814 - AluSx SINE Alu -5 307 13 1570 97 5 0 chr4 51996667 51996874 -150331473 + AluSg/x SINE Alu 66 273 -39 222 37 0 0 chr4 51997042 51997069 -150331278 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 603 250 0 9 chr4 51997076 51997192 -150331155 - FLAM_C SINE Alu -17 116 2 2008 176 9 9 chr4 51997752 51998093 -150330254 - MER58B DNA MER1_type 0 341 1 589 294 151 71 chr4 51998144 51998610 -150329737 - L2 LINE L2 -27 3245 2818 185 0 0 39 chr4 51998610 51998636 -150329711 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1536 192 4 7 chr4 51998646 51998922 -150329425 - AluJo SINE Alu -37 275 1 734 168 15 44 chr4 51998928 51999065 -150329282 - FLAM_A SINE Alu 0 133 1 589 294 151 71 chr4 51999065 51999134 -150329213 - L2 LINE L2 -466 2806 2647 276 283 85 0 chr4 51999236 51999342 -150329005 - MIR SINE MIR -35 227 113 2148 142 48 11 chr4 51999600 51999953 -150328394 - MER47A DNA MER2_type 0 366 1 404 255 0 0 chr4 51999965 52000059 -150328288 - MER53 DNA DNA -73 116 23 1953 132 3 10 chr4 52000401 52000704 -150327643 - AluJb SINE Alu -2 310 10 24 0 0 0 chr4 52001043 52001067 -150327280 + AT_rich Low_complexity Low_complexity 1 24 0 2206 139 30 46 chr4 52001440 52001808 -150326539 + THE1B LTR MaLR 3 364 0 2133 129 0 10 chr4 52003330 52003640 -150324707 - AluSx SINE Alu -1 311 5 2207 114 0 0 chr4 52004048 52004338 -150324009 + AluSx SINE Alu 1 290 -22 2020 146 7 0 chr4 52004877 52005185 -150323162 - AluSx SINE Alu -2 310 1 248 246 31 0 chr4 52005187 52005252 -150323095 - MLT1K LTR MaLR -8 580 514 2171 114 0 10 chr4 52005784 52006083 -150322264 - AluSx SINE Alu -11 301 6 657 196 98 0 chr4 52006088 52006231 -150322116 - MIR SINE MIR -99 163 7 386 260 48 0 chr4 52006748 52006852 -150321495 - L2 LINE L2 -6 3307 3199 305 242 292 0 chr4 52007432 52007552 -150320795 - L2 LINE L2 -380 2934 2780 1562 213 0 6 chr4 52007559 52007873 -150320474 + AluJo SINE Alu 1 312 0 308 193 24 0 chr4 52007894 52007977 -150320370 + GA-rich Low_complexity Low_complexity 4 88 0 522 241 59 99 chr4 52007978 52008189 -150320158 - L2 LINE L2 -1208 2106 1905 694 168 80 16 chr4 52008189 52008314 -150320033 - FLAM_A SINE Alu 0 133 1 522 241 59 99 chr4 52008314 52008355 -150319992 - L2 LINE L2 -1409 1905 1864 1049 160 23 0 chr4 52008606 52008781 -150319566 - L1PB4 LINE L1 -41 6115 5937 187 270 0 96 chr4 52008874 52008989 -150319358 - L2 LINE L2 -2470 844 741 1902 140 11 7 chr4 52008995 52009281 -150319066 + AluJo SINE Alu 8 294 -18 207 146 55 0 chr4 52009281 52009336 -150319011 + GA-rich Low_complexity Low_complexity 1 58 0 794 296 166 67 chr4 52009346 52009984 -150318363 - L2 LINE L2 -2538 776 76 2083 102 4 0 chr4 52010020 52010295 -150318052 + AluSc SINE Alu 1 276 -33 1459 140 36 8 chr4 52010472 52010573 -150317774 - L1PB4 LINE L1 -139 6017 5917 386 241 59 87 chr4 52010573 52010722 -150317625 - L1MB7 LINE L1 -276 5908 5756 2224 105 20 3 chr4 52010722 52011026 -150317321 - AluSx SINE Alu -3 309 1 1644 178 0 11 chr4 52011026 52011312 -150317035 + AluJo SINE Alu 26 308 -4 386 241 59 87 chr4 52011312 52011414 -150316933 - L1MB7 LINE L1 -426 5758 5663 2103 112 0 14 chr4 52012748 52013057 -150315290 + AluSq SINE Alu 1 305 0 302 338 93 0 chr4 52013181 52013320 -150315027 + MIR SINE MIR 39 190 -72 1522 180 24 20 chr4 52013426 52013720 -150314627 - AluJo SINE Alu -17 295 1 243 177 23 131 chr4 52013894 52014024 -150314323 - L1ME4a LINE L1 -43 6078 5963 463 339 31 15 chr4 52014025 52014220 -150314127 - MIR SINE MIR -52 210 13 441 243 112 0 chr4 52014282 52014434 -150313913 - L1ME4a LINE L1 -238 5883 5715 32 0 0 0 chr4 52014614 52014646 -150313701 + AT_rich Low_complexity Low_complexity 1 32 0 552 250 77 24 chr4 52014791 52014999 -150313348 - MLT1K LTR MaLR 0 588 370 372 319 25 31 chr4 52015077 52015237 -150313110 - MLT1K LTR MaLR -419 169 11 325 258 61 0 chr4 52015319 52015385 -150312962 - AluJ/FRAM SINE Alu -12 290 221 1817 215 95 0 chr4 52015385 52015785 -150312562 + MLT1F LTR MaLR 105 542 0 810 134 87 24 chr4 52015887 52016014 -150312333 + AluJb SINE Alu 162 296 -16 2130 88 11 11 chr4 52016295 52016601 -150311746 + AluSq SINE Alu 1 306 0 2250 108 0 0 chr4 52016921 52017217 -150311130 - AluSc SINE Alu -13 296 1 1643 170 0 11 chr4 52017217 52017498 -150310849 - AluJo SINE Alu -11 301 23 643 137 10 29 chr4 52017549 52017651 -150310696 + FRAM SINE Alu 66 165 -11 788 288 34 8 chr4 52017653 52017889 -150310458 + MIR SINE MIR 19 260 -2 474 239 23 31 chr4 52017991 52018121 -150310226 - MER5A DNA MER1_type -27 162 34 261 284 220 0 chr4 52018269 52018378 -150309969 - MIR SINE MIR -56 206 74 * 760 316 92 52 chr4 52018376 52018429 -150309918 + L2 LINE L2 2269 2318 -954 1135 215 68 76 chr4 52018429 52018499 -150309848 + MLT1A1 LTR MaLR 1 70 -295 1798 192 0 6 chr4 52018499 52018812 -150309535 + AluJb SINE Alu 1 311 -1 1135 215 68 76 chr4 52018812 52019109 -150309238 + MLT1A1 LTR MaLR 70 365 0 760 316 92 52 chr4 52019109 52019553 -150308794 + L2 LINE L2 2318 2801 -471 1993 112 0 14 chr4 52019553 52019873 -150308474 + AluSx SINE Alu 1 316 0 760 316 92 52 chr4 52019873 52020136 -150308211 + L2 LINE L2 2801 3052 -220 684 297 100 9 chr4 52020210 52020439 -150307908 + MIR SINE MIR 13 262 0 2387 50 0 0 chr4 52020528 52020805 -150307542 + AluY SINE Alu 28 304 -7 321 265 0 15 chr4 52020805 52020873 -150307474 - AluJo/FLAM SINE Alu -186 116 50 472 245 144 29 chr4 52020922 52021130 -150307217 - L2 LINE L2 0 3313 3082 1542 176 153 4 chr4 52021208 52021470 -150306877 - AluSx SINE Alu -1 301 1 1288 270 66 5 chr4 52021471 52021849 -150306498 + L2 LINE L2 2548 2948 -366 563 176 0 0 chr4 52021882 52021967 -150306380 + AluJb SINE Alu 201 285 -27 2443 239 89 84 chr4 52021983 52022315 -150306032 - L2 LINE L2 -752 2562 2233 2311 100 10 6 chr4 52022315 52022626 -150305721 + AluSx SINE Alu 1 312 0 2443 239 89 84 chr4 52022626 52023383 -150304964 - L2 LINE L2 -1081 2233 1468 1759 169 3 7 chr4 52023685 52023992 -150304355 + AluJb SINE Alu 1 306 -6 21 0 0 0 chr4 52024269 52024290 -150304057 + AT_rich Low_complexity Low_complexity 1 21 0 2124 121 10 3 chr4 52025344 52025642 -150302705 + AluSg SINE Alu 1 300 -10 281 324 72 22 chr4 52026153 52026375 -150301972 + L2 LINE L2 857 1089 -2225 1293 96 0 2 chr4 52026664 52026862 -150301485 + AluSc SINE Alu 68 297 -12 2023 116 3 14 chr4 52027001 52027293 -150301054 + AluSx SINE Alu 1 289 -23 2507 145 82 2 chr4 52027309 52027709 -150300638 + L1PA8 LINE L1 10 441 -6020 * 29296 126 15 26 chr4 52027695 52033937 -150294410 + L1PA8 LINE L1 243 6487 0 1573 187 6 25 chr4 52034013 52034329 -150294018 - AluJo SINE Alu -2 310 1 1916 160 0 10 chr4 52034338 52034644 -150293703 - AluJb SINE Alu -9 303 1 1333 186 69 4 chr4 52034736 52034907 -150293440 - AluJo SINE Alu -5 307 114 207 0 0 0 chr4 52034907 52034930 -150293417 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1333 186 69 4 chr4 52034930 52035005 -150293342 - AluJo SINE Alu -198 114 45 1931 160 0 3 chr4 52035106 52035399 -150292948 - AluJb SINE Alu -20 292 1 244 158 35 0 chr4 52036119 52036176 -150292171 + CT-rich Low_complexity Low_complexity 2 60 0 2023 146 3 16 chr4 52036184 52036500 -150291847 - AluSx SINE Alu 0 312 1 2863 47 0 8 chr4 52036513 52036875 -150291472 - L1PA5 LINE L1 0 6154 5796 662 108 45 0 chr4 52036965 52037076 -150291271 + L1MA5 LINE L1 6181 6296 -4 676 317 121 16 chr4 52037093 52037399 -150290948 + L2 LINE L2 1700 2037 -1277 3812 124 151 126 chr4 52038125 52039237 -150289110 + pTR5 LTR ERV1 1299 2438 0 1807 185 3 0 chr4 52039346 52039643 -150288704 + AluSx SINE Alu 6 303 -9 872 248 195 19 chr4 52039765 52040124 -150288223 - L2 LINE L2 -4 3309 2888 180 188 213 25 chr4 52040900 52040980 -150287367 - MIR SINE MIR -74 188 94 598 185 206 0 chr4 52043120 52043266 -150285081 + MER45A DNA AcHobo 3 178 0 2329 74 3 7 chr4 52043325 52043623 -150284724 + AluSq SINE Alu 1 297 -16 480 282 17 66 chr4 52044107 52044288 -150284059 - MIR SINE MIR -86 176 5 195 100 0 0 chr4 52044358 52044388 -150283959 + (TA)n Simple_repeat Simple_repeat 2 31 0 2201 115 20 0 chr4 52044516 52044821 -150283526 - AluSq SINE Alu -1 312 2 1595 162 7 36 chr4 52044847 52045149 -150283198 + AluJo SINE Alu 6 298 -14 2138 128 0 0 chr4 52045275 52045587 -150282760 - AluSx SINE Alu 0 312 1 645 120 0 162 chr4 52045905 52045957 -150282390 + AluJo/FLAM SINE Alu 1 60 -252 703 221 0 0 chr4 52045957 52046088 -150282259 - AluJo/FLAM SINE Alu -171 131 1 645 120 0 162 chr4 52046088 52046177 -150282170 + AluJo/FLAM SINE Alu 60 119 -193 2229 96 0 7 chr4 52047326 52047617 -150280730 - AluY SINE Alu -13 298 10 2157 125 6 10 chr4 52047631 52047944 -150280403 - AluSq SINE Alu -1 312 1 186 43 0 0 chr4 52047993 52048016 -150280331 + (T)n Simple_repeat Simple_repeat 1 23 0 2437 92 0 0 chr4 52048389 52048694 -150279653 + AluSx SINE Alu 1 305 -7 2248 121 3 0 chr4 52049507 52049804 -150278543 + AluSx SINE Alu 1 298 -14 673 261 57 0 chr4 52049804 52049961 -150278386 + MIR SINE MIR 22 187 -75 645 266 42 36 chr4 52050228 52050420 -150277927 + MIR3 SINE MIR 13 205 -3 191 234 324 36 chr4 52050427 52050538 -150277809 - MIR3 SINE MIR -14 194 52 1328 194 78 19 chr4 52050981 52051067 -150277280 + MER58B DNA MER1_type 1 80 -2340 1736 155 3 62 chr4 52051067 52051389 -150276958 + AluJb SINE Alu 1 303 -9 1328 194 78 19 chr4 52051389 52051622 -150276725 + MER58B DNA MER1_type 80 339 -2 282 200 0 0 chr4 52051634 52051689 -150276658 - MER3 DNA MER1_type -2 207 153 1619 156 85 0 chr4 52051690 52051997 -150276350 - MER68 LTR ERV1 -95 467 135 764 304 16 24 chr4 52052363 52052616 -150275731 + MIR SINE MIR 12 262 0 245 259 17 0 chr4 52053316 52053374 -150274973 + MER5A DNA MER1_type 26 84 -105 212 0 36 0 chr4 52054060 52054088 -150274259 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1879 104 0 11 chr4 52054724 52054984 -150273363 + AluSc SINE Alu 39 295 -14 1660 149 84 12 chr4 52055061 52055382 -150272965 + MER2 DNA MER2_type 1 344 0 332 297 148 7 chr4 52055690 52055845 -150272502 + L2 LINE L2 1894 2070 -1244 206 270 202 0 chr4 52055852 52055941 -150272406 - L2 LINE L2 -17 3296 3190 181 362 143 10 chr4 52056105 52056301 -150272046 + L2 LINE L2 2443 2664 -650 262 308 98 30 chr4 52056402 52056535 -150271812 + L2 LINE L2 3171 3312 -1 190 205 0 26 chr4 52056582 52056621 -150271726 - MIR SINE MIR -107 155 118 293 167 137 10 chr4 52056621 52056723 -150271624 - L1ME3A LINE L1 -206 5964 5850 389 250 109 26 chr4 52056723 52056819 -150271528 - MER63 DNA MER1_type 0 1061 974 2324 87 3 3 chr4 52056819 52057117 -150271230 + AluSc SINE Alu 1 298 -11 389 250 109 26 chr4 52057117 52057200 -150271147 - MER63 DNA MER1_type -87 974 1 1144 265 165 34 chr4 52057357 52058582 -150269765 - L1ME3A LINE L1 -541 5629 4234 23 33 0 0 chr4 52058831 52058861 -150269486 + AT_rich Low_complexity Low_complexity 1 30 0 3244 46 0 0 chr4 52059251 52059677 -150268670 + L1PA5 LINE L1 5746 6171 0 180 0 0 0 chr4 52060613 52060633 -150267714 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 1391 192 14 39 chr4 52060635 52060916 -150267431 - AluJo SINE Alu -36 276 3 1843 148 0 7 chr4 52060924 52061227 -150267120 - AluJb SINE Alu 0 301 1 1837 140 49 7 chr4 52061758 52062044 -150266303 + AluJo SINE Alu 1 298 -14 270 335 65 94 chr4 52062474 52062749 -150265598 - L2 LINE L2 -1 3271 3005 298 239 104 153 chr4 52062888 52063110 -150265237 + MIR SINE MIR 46 256 -6 765 256 14 95 chr4 52063164 52063222 -150265125 + MER46C DNA MER2_type 1 62 -276 2333 78 10 3 chr4 52063222 52063531 -150264816 - AluY SINE Alu 0 311 1 765 256 14 95 chr4 52063531 52063839 -150264508 + MER46C DNA MER2_type 62 337 -1 991 150 61 0 chr4 52063982 52064162 -150264185 - MER3 DNA MER1_type -17 192 2 589 134 10 0 chr4 52064480 52064577 -150263770 - Tigger7 DNA MER2_type 0 2487 2390 1557 167 0 0 chr4 52064583 52064835 -150263512 - Tigger7 DNA MER2_type -481 252 1 553 314 13 7 chr4 52065464 52065617 -150262730 - MIR3 SINE MIR -15 193 40 2134 125 7 0 chr4 52065888 52066184 -150262163 + AluSx SINE Alu 1 298 -14 25 31 0 0 chr4 52066282 52066314 -150262033 + AT_rich Low_complexity Low_complexity 1 32 0 2188 102 24 0 chr4 52066741 52067035 -150261312 - AluSp SINE Alu -12 301 1 2156 103 21 3 chr4 52067875 52068165 -150260182 - AluSc SINE Alu -14 295 1 1890 151 0 0 chr4 52068224 52068503 -150259844 + AluSx SINE Alu 1 279 -33 1559 196 22 19 chr4 52068796 52069107 -150259240 - AluJo SINE Alu 0 312 1 584 166 27 139 chr4 52070192 52070379 -150257968 - Charlie1 DNA MER1_type -2550 211 46 291 255 210 32 chr4 52070709 52070866 -150257481 + MIR SINE MIR 3 187 -75 1797 166 3 3 chr4 52071757 52072053 -150256294 + AluJo SINE Alu 1 296 -16 1200 143 119 4 chr4 52072207 52072451 -150255896 - MER2 DNA MER2_type 0 345 74 258 180 60 0 chr4 52072483 52072533 -150255814 - MLT1G1 LTR MaLR -522 73 21 262 349 7 7 chr4 52073625 52073774 -150254573 - MLT1-int LTR MaLR -1221 150 2 5658 103 43 20 chr4 52073792 52074754 -150253593 - L1MA3 LINE L1 -6 7718 6735 721 176 7 29 chr4 52074776 52074912 -150253435 - FLAM_C SINE Alu 0 133 1 22 0 0 0 chr4 52074917 52074939 -150253408 + AT_rich Low_complexity Low_complexity 1 22 0 42308 40 2 2 chr4 52074939 52081090 -150247257 - L1PA4 LINE L1 -3 6152 3 17258 143 34 48 chr4 52081136 52081985 -150246362 - L1MA3 LINE L1 -818 6747 5887 2001 160 7 0 chr4 52081985 52082292 -150246055 - AluSx SINE Alu -3 309 1 17258 143 34 48 chr4 52082292 52082338 -150246009 - L1MA3 LINE L1 -1678 5887 5842 1718 179 0 45 chr4 52082338 52082505 -150245842 - AluJo SINE Alu -14 298 125 348 24 0 0 chr4 52082505 52082546 -150245801 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 1897 127 3 25 chr4 52082546 52082830 -150245517 - AluSc SINE Alu -31 278 1 1718 179 0 45 chr4 52082830 52082973 -150245374 - AluJo SINE Alu -185 127 1 17258 143 34 48 chr4 52082973 52084503 -150243844 - L1MA3 LINE L1 -1723 5842 4291 387 0 0 0 chr4 52084503 52084546 -150243801 + (TG)n Simple_repeat Simple_repeat 2 44 0 17258 143 34 48 chr4 52084546 52085785 -150242562 - L1MA3 LINE L1 -3274 4291 3035 1626 178 11 18 chr4 52085785 52086071 -150242276 + AluJb SINE Alu 2 285 -27 17258 143 34 48 chr4 52086071 52089234 -150239113 - L1MA3 LINE L1 -4530 3035 14 407 282 76 0 chr4 52089244 52089375 -150238972 - MLT2F LTR ERVL -4 659 519 373 293 92 56 chr4 52089380 52089629 -150238718 - MLT1H LTR MaLR -289 260 3 929 233 34 4 chr4 52089673 52089909 -150238438 - MIR SINE MIR 0 262 20 190 308 249 4 chr4 52089926 52090163 -150238184 + L3 LINE CR1 1012 1306 -271 442 277 0 8 chr4 52090530 52090649 -150237698 + L2 LINE L2 3193 3310 -3 365 193 0 45 chr4 52090651 52090739 -150237608 + Charlie8 DNA MER1_type 88 171 -2246 1840 146 36 7 chr4 52092125 52092427 -150235920 + AluSx SINE Alu 1 311 -1 2047 120 33 0 chr4 52092657 52092958 -150235389 + AluY SINE Alu 1 311 0 536 70 12 0 chr4 52093433 52093519 -150234828 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 2102 134 3 0 chr4 52093519 52093809 -150234538 - AluSx SINE Alu -21 291 1 2042 140 10 0 chr4 52093968 52094261 -150234086 - AluSg SINE Alu -14 296 1 329 74 0 19 chr4 52094544 52094555 -150233792 + (CAAAAA)n Simple_repeat Simple_repeat 2 12 -42 1919 169 7 0 chr4 52094555 52094863 -150233484 + AluJb SINE Alu 1 310 -2 329 74 0 19 chr4 52094863 52094905 -150233442 + (CAAAAA)n Simple_repeat Simple_repeat 12 54 0 450 0 0 0 chr4 52095316 52095366 -150232981 + (TG)n Simple_repeat Simple_repeat 1 50 0 2070 112 0 11 chr4 52095366 52095643 -150232704 - AluSx SINE Alu -33 279 6 595 159 48 63 chr4 52096018 52096144 -150232203 - FLAM_A SINE Alu -9 124 1 3922 51 0 2 chr4 52096216 52096702 -150231645 - L1P LINE L1 -924 5222 4738 18341 41 4 1 chr4 52096702 52099698 -150228649 - L1PA5 LINE L1 -4 6150 3152 7308 50 7 1 chr4 52099698 52100627 -150227720 + L1PA5 LINE L1 5220 6153 -1 22 0 0 0 chr4 52100880 52100902 -150227445 + AT_rich Low_complexity Low_complexity 1 22 0 475 283 155 13 chr4 52102521 52102747 -150225600 - MIR SINE MIR -3 259 2 400 182 10 61 chr4 52102749 52102848 -150225499 - MER103 DNA DNA -40 126 33 201 349 12 12 chr4 52102867 52102950 -150225397 + L2 LINE L2 3230 3312 -1 23 33 0 0 chr4 52104198 52104228 -150224119 + AT_rich Low_complexity Low_complexity 1 30 0 807 143 0 8 chr4 52104228 52104347 -150224000 - AluJb SINE Alu -194 118 1 25 65 0 0 chr4 52104441 52104487 -150223860 + AT_rich Low_complexity Low_complexity 1 46 0 2185 93 7 7 chr4 52104576 52104867 -150223480 + AluSx SINE Alu 1 291 -21 302 89 0 0 chr4 52105053 52105098 -150223249 - L1PA5 LINE L1 0 6154 6110 1250 232 108 43 chr4 52105191 52105661 -150222686 + MLT1D LTR MaLR 3 503 -2 1526 171 154 14 chr4 52105708 52106053 -150222294 - MSTD LTR MaLR 0 396 4 2045 131 0 55 chr4 52106097 52106425 -150221922 + AluSx SINE Alu 1 310 -2 25 31 0 0 chr4 52106497 52106529 -150221818 + AT_rich Low_complexity Low_complexity 1 32 0 1575 178 42 11 chr4 52106673 52106959 -150221388 + AluJb SINE Alu 1 295 -17 716 185 0 23 chr4 52107018 52107148 -150221199 + FLAM_A SINE Alu 1 127 -6 329 331 40 40 chr4 52107385 52107536 -150220811 - MER91A DNA MER1_type -45 151 1 1523 187 89 79 chr4 52107594 52108022 -150220325 - MLT1D LTR MaLR -53 452 21 938 241 100 60 chr4 52108586 52109038 -150219309 - L1MC4 LINE L1 -4 8038 7569 253 278 48 48 chr4 52109750 52109876 -150218471 - L2 LINE L2 -1 3312 3187 33 0 0 0 chr4 52110956 52110989 -150217358 + AT_rich Low_complexity Low_complexity 1 33 0 1246 197 161 0 chr4 52111019 52111273 -150217074 - AluJb SINE Alu -7 295 1 231 275 29 0 chr4 52111546 52111615 -150216732 - L1ME LINE L1 -287 5877 5807 1707 147 9 83 chr4 52112120 52112446 -150215901 - AluJo SINE Alu -10 302 1 244 254 0 0 chr4 52112672 52112735 -150215612 - MIR SINE MIR -4 258 196 2009 122 4 0 chr4 52113071 52113341 -150215006 + AluSx SINE Alu 21 291 -21 801 127 0 24 chr4 52113754 52113880 -150214467 + FLAM_C SINE Alu 21 143 0 2554 68 3 0 chr4 52114015 52114324 -150214023 - AluY SINE Alu -1 310 1 33 0 0 0 chr4 52114338 52114371 -150213976 + AT_rich Low_complexity Low_complexity 1 33 0 1529 196 18 7 chr4 52114549 52114830 -150213517 + AluJo SINE Alu 1 284 -28 238 327 159 0 chr4 52115216 52115323 -150213024 - L2 LINE L2 -23 3249 3126 289 244 73 40 chr4 52116162 52116301 -150212046 + MIR SINE MIR 4 150 -63 4098 118 9 37 chr4 52117685 52117805 -150210542 - MER41B LTR ERV1 0 635 513 2326 99 3 3 chr4 52117805 52118117 -150210230 + AluSx SINE Alu 1 312 0 4098 118 9 37 chr4 52118117 52118646 -150209701 - MER41B LTR ERV1 -122 513 4 323 268 185 56 chr4 52118806 52119201 -150209146 + L2 LINE L2 2855 3300 -13 273 57 0 0 chr4 52119201 52119236 -150209111 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 342 88 0 18 chr4 52119630 52119687 -150208660 - FAM SINE Alu -2 173 118 201 285 117 15 chr4 52120256 52120393 -150207954 + L2 LINE L2 2956 3106 -166 1113 167 0 6 chr4 52120452 52120626 -150207721 - FAM SINE Alu -2 173 1 280 121 0 61 chr4 52120627 52120693 -150207654 + (TCCC)n Simple_repeat Simple_repeat 4 65 0 193 281 0 0 chr4 52120706 52120763 -150207584 + CT-rich Low_complexity Low_complexity 4 60 0 24 207 0 0 chr4 52120763 52120821 -150207526 + AT_rich Low_complexity Low_complexity 1 58 0 300 205 31 18 chr4 52120821 52121039 -150207308 + A-rich Low_complexity Low_complexity 1 220 0 27 49 0 0 chr4 52121052 52121093 -150207254 + AT_rich Low_complexity Low_complexity 1 41 0 543 162 44 73 chr4 52121261 52121397 -150206950 + MSTB1 LTR MaLR 22 153 -279 251 222 0 0 chr4 52121402 52121447 -150206900 - MSTB1 LTR MaLR -224 208 164 1026 171 28 33 chr4 52121581 52121792 -150206555 + MSTB1 LTR MaLR 223 432 0 427 323 52 19 chr4 52121792 52122061 -150206286 + L2 LINE L2 1903 2180 -1134 227 286 136 43 chr4 52122259 52122399 -150205948 - L2 LINE L2 -838 2476 2324 2345 114 0 0 chr4 52122529 52122836 -150205511 - AluY SINE Alu -3 308 2 392 43 0 0 chr4 52122839 52122885 -150205462 - AluSq/x SINE Alu -170 133 88 276 274 9 19 chr4 52122989 52123095 -150205252 + CT-rich Low_complexity Low_complexity 4 108 0 200 344 0 31 chr4 52123092 52123188 -150205159 + C-rich Low_complexity Low_complexity 3 95 0 * 751 112 0 42 chr4 52123220 52123363 -150204984 + (TTCC)n Simple_repeat Simple_repeat 2 138 0 362 104 0 0 chr4 52123367 52123415 -150204932 + (TCCCC)n Simple_repeat Simple_repeat 1 48 0 1194 146 24 29 chr4 52123415 52123621 -150204726 - AluJb SINE Alu -21 291 87 243 220 0 51 chr4 52123991 52124050 -150204297 + polypyrimidine Low_complexity Low_complexity 4 59 0 27 0 0 0 chr4 52124105 52124132 -150204215 + AT_rich Low_complexity Low_complexity 1 27 0 1634 93 0 0 chr4 52124132 52124347 -150204000 - L1PA8 LINE L1 -3 6169 5955 5662 54 0 14 chr4 52124350 52124753 -150203594 + L1PA8 LINE L1 5073 5480 -692 2192 114 0 0 chr4 52124753 52125042 -150203305 + AluSg SINE Alu 1 289 -21 5662 54 0 14 chr4 52125042 52125520 -150202827 + L1PA8 LINE L1 5480 5942 -230 659 265 35 0 chr4 52125559 52125729 -150202618 - MIR SINE MIR -86 176 1 1812 136 13 43 chr4 52125913 52126215 -150202132 + AluJb SINE Alu 11 303 -9 2079 88 0 4 chr4 52126835 52127096 -150201251 - AluSx SINE Alu -16 296 37 181 250 0 0 chr4 52127919 52127967 -150200380 + MIR SINE MIR 205 252 -10 5667 146 31 33 chr4 52129616 52130813 -150197534 - L1MC1 LINE L1 -2 6331 5198 195 42 0 0 chr4 52130813 52130837 -150197510 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 42641 37 26 3 chr4 52130837 52136814 -150191533 - L1PA3 LINE L1 -4 6151 32 2544 57 0 0 chr4 52136834 52137130 -150191217 - AluY SINE Alu -15 296 1 2021 111 7 14 chr4 52137159 52137456 -150190891 - AluSc SINE Alu -12 297 3 914 204 0 35 chr4 52137473 52137645 -150190702 - FRAM SINE Alu 0 166 1 368 275 76 64 chr4 52137758 52138202 -150190145 + L1MC5 LINE L1 7352 7904 -138 659 259 24 33 chr4 52138305 52138443 -150189904 + MIR SINE MIR 14 150 -112 2268 163 31 8 chr4 52138443 52138798 -150189549 - THE1B LTR MaLR 0 364 2 659 259 24 33 chr4 52138798 52138885 -150189462 + MIR SINE MIR 150 236 -26 2242 112 0 3 chr4 52139834 52140137 -150188210 - AluSg SINE Alu -6 304 3 28 29 0 0 chr4 52140166 52140201 -150188146 + AT_rich Low_complexity Low_complexity 1 35 0 377 270 88 14 chr4 52140212 52140383 -150187964 - MIR SINE MIR -34 228 46 377 242 42 21 chr4 52140397 52140492 -150187855 - L2 LINE L2 -7 3306 3210 956 153 45 17 chr4 52140697 52140873 -150187474 + FRAM SINE Alu 1 173 -3 1944 141 3 0 chr4 52141600 52141906 -150186441 - AluSx SINE Alu 0 307 1 2178 102 7 10 chr4 52141966 52142259 -150186088 - AluSx SINE Alu -20 292 1 497 214 26 58 chr4 52142847 52143001 -150185346 - L2 LINE L2 -9 3304 3156 182 114 0 29 chr4 52143003 52143038 -150185309 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 885 242 73 16 chr4 52143040 52143288 -150185059 + MIR SINE MIR 1 262 0 675 276 23 72 chr4 52143290 52143554 -150184793 - L2 LINE L2 -196 3117 2867 878 229 113 19 chr4 52143570 52143880 -150184467 - LTR16A1 LTR ERVL -2 455 117 2053 125 0 56 chr4 52144179 52144500 -150183847 - AluSx SINE Alu -9 303 1 250 206 20 118 chr4 52144836 52144938 -150183409 + MLT2E LTR ERVL 19 110 -518 1406 134 130 8 chr4 52144947 52145185 -150183162 - AluSx SINE Alu -45 267 1 481 165 13 0 chr4 52145716 52145795 -150182552 - U6 snRNA snRNA -1 106 27 287 316 13 0 chr4 52145800 52145879 -150182468 + MLT2E LTR ERVL 96 175 -453 449 55 0 0 chr4 52145896 52145951 -150182396 + Alu SINE Alu 2 56 -254 974 106 0 0 chr4 52145951 52146141 -150182206 + AluSp/q SINE Alu 154 343 0 1366 238 132 5 chr4 52146141 52146528 -150181819 + MLT2E LTR ERVL 193 628 0 1895 145 198 3 chr4 52146671 52147029 -150181318 - MSTA LTR MaLR 0 428 1 273 261 164 56 chr4 52147176 52147213 -150181134 - L1MC4a LINE L1 -1651 6157 6125 2068 147 0 0 chr4 52147213 52147512 -150180835 + AluSx SINE Alu 1 299 -13 273 261 164 56 chr4 52147512 52147669 -150180678 - L1MC4a LINE L1 -1683 6125 5942 1631 155 3 80 chr4 52148078 52148414 -150179933 - AluJb SINE Alu -2 310 1 1051 263 50 156 chr4 52148522 52148764 -150179583 + Charlie7 DNA MER1_type 167 433 -2179 2150 29 8 0 chr4 52148764 52149007 -150179340 + L1PA4 LINE L1 5910 6154 -1 1051 263 50 156 chr4 52149007 52149385 -150178962 + Charlie7 DNA MER1_type 433 721 -1891 22 56 0 0 chr4 52149960 52149996 -150178351 + AT_rich Low_complexity Low_complexity 1 36 0 2326 100 0 0 chr4 52150485 52150784 -150177563 - AluSc SINE Alu -10 299 1 382 263 26 35 chr4 52151059 52151173 -150177174 - MLT1I LTR MaLR -17 392 280 1564 169 83 7 chr4 52151197 52151499 -150176848 + MLT1D LTR MaLR 12 336 -169 340 203 0 0 chr4 52151499 52151558 -150176789 - MER115 DNA AcHobo -38 655 597 450 231 7 82 chr4 52151824 52151971 -150176376 - MER103 DNA DNA -9 157 22 186 43 0 0 chr4 52152174 52152197 -150176150 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 599 143 9 18 chr4 52152204 52152316 -150176031 - ORSL DNA AcHobo -16 259 149 802 144 23 38 chr4 52152317 52152330 -150176017 - FLAM_C SINE Alu -181 131 119 243 0 0 0 chr4 52152330 52152357 -150175990 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 802 144 23 38 chr4 52152357 52152475 -150175872 - FLAM_C SINE Alu -193 119 2 834 150 48 14 chr4 52152476 52152623 -150175724 - ORSL DNA AcHobo -120 155 4 308 347 20 7 chr4 52152941 52153088 -150175259 - L1MC4a LINE L1 -2097 5711 5563 296 319 96 0 chr4 52154531 52154666 -150173681 - L2 LINE L2 -4 3309 3162 835 263 101 29 chr4 52154842 52155260 -150173087 - LTR16A LTR ERVL 0 450 12 350 308 33 33 chr4 52155316 52155498 -150172849 - MER5A DNA MER1_type -4 185 4 433 187 155 91 chr4 52155503 52155690 -150172657 + MLT1E2 LTR MaLR 1 199 -425 686 177 5 19 chr4 52155690 52155904 -150172443 + CT-rich Low_complexity Low_complexity 1 211 0 236 147 0 0 chr4 52155904 52155938 -150172409 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 877 150 0 8 chr4 52155938 52156071 -150172276 - FLAM_C SINE Alu 0 133 2 1657 235 97 2 chr4 52156071 52156492 -150171855 + MLT1E2 LTR MaLR 164 624 -2 189 290 16 0 chr4 52156643 52156705 -150171642 + MIR SINE MIR 157 219 -43 866 101 21 0 chr4 52156838 52157178 -150171169 + (TA)n Simple_repeat Simple_repeat 1 347 0 812 212 7 7 chr4 52157182 52157333 -150171014 - FRAM SINE Alu -15 151 1 690 242 59 33 chr4 52157537 52158062 -150170285 - LTR50 LTR ERVL 0 684 1 29 47 0 0 chr4 52158674 52158717 -150169630 + AT_rich Low_complexity Low_complexity 1 43 0 2458 61 3 0 chr4 52158718 52159011 -150169336 - AluY SINE Alu -16 295 2 2221 184 35 26 chr4 52160006 52160052 -150168295 + MER65C LTR ERV1 1 45 -416 2394 133 41 6 chr4 52160052 52160414 -150167933 - THE1C LTR MaLR 0 375 1 2221 184 35 26 chr4 52160414 52160824 -150167523 + MER65C LTR ERV1 45 461 0 778 149 122 140 chr4 52161917 52162139 -150166208 - MER20 DNA MER1_type 0 219 2 278 314 50 58 chr4 52163289 52163547 -150164800 - L2 LINE L2 -189 3083 2828 215 333 47 53 chr4 52163593 52163743 -150164604 - L2 LINE L2 -481 2833 2685 455 203 38 0 chr4 52163997 52164076 -150164271 + FRAM/FAM SINE Alu 1 81 -95 24 53 0 0 chr4 52164092 52164130 -150164217 + AT_rich Low_complexity Low_complexity 1 38 0 226 239 127 0 chr4 52164215 52164286 -150164061 - MER113 DNA MER1_type? -441 80 1 2707 111 0 48 chr4 52164534 52164930 -150163417 - MER51B LTR ERV1 0 377 1 23 33 0 0 chr4 52165216 52165246 -150163101 + AT_rich Low_complexity Low_complexity 1 30 0 520 194 186 52 chr4 52165295 52165543 -150162804 - L1ME4a LINE L1 -118 6003 5723 1641 174 0 63 chr4 52165855 52166188 -150162159 + AluJb SINE Alu 1 312 0 23 54 0 0 chr4 52166337 52166374 -150161973 + AT_rich Low_complexity Low_complexity 1 37 0 321 217 72 12 chr4 52166564 52166647 -150161700 - L1ME4a LINE L1 -542 5579 5492 1094 155 187 68 chr4 52166926 52167236 -150161111 - L1MB7 LINE L1 -5 6179 5833 198 191 0 0 chr4 52167406 52167448 -150160899 + CT-rich Low_complexity Low_complexity 2 43 0 1397 227 85 87 chr4 52167514 52168069 -150160278 - MER41C LTR ERV1 0 554 1 441 0 0 0 chr4 52168148 52168197 -150160150 + (CA)n Simple_repeat Simple_repeat 2 50 0 597 162 39 7 chr4 52168376 52168530 -150159817 + CT-rich Low_complexity Low_complexity 2 160 0 1754 156 40 0 chr4 52168535 52168810 -150159537 - AluSx SINE Alu -26 286 1 227 320 80 16 chr4 52169140 52169265 -150159082 - L2 LINE L2 -205 3067 2935 2081 121 13 20 chr4 52169522 52169828 -150158519 + AluSq SINE Alu 1 304 -9 25 31 0 0 chr4 52169941 52169973 -150158374 + AT_rich Low_complexity Low_complexity 1 32 0 303 339 0 18 chr4 52170016 52170125 -150158222 - L2 LINE L2 -44 3269 3163 4267 95 2 26 chr4 52170346 52170914 -150157433 + MER41A LTR ERV1 1 554 0 198 352 0 0 chr4 52171406 52171460 -150156887 + L2 LINE L2 3217 3270 -2 319 328 70 16 chr4 52171478 52171606 -150156741 - MIR SINE MIR -108 154 20 270 299 204 47 chr4 52171778 52172053 -150156294 - L2 LINE L2 -559 2755 2525 216 0 0 0 chr4 52172053 52172077 -150156270 + (GGGAA)n Simple_repeat Simple_repeat 5 28 0 270 299 204 47 chr4 52172077 52172711 -150155636 - L2 LINE L2 -789 2525 1703 781 227 43 0 chr4 52172985 52173148 -150155199 + MIR SINE MIR 5 174 -88 1671 84 5 0 chr4 52173153 52173367 -150154980 - AluSp SINE Alu -11 302 88 277 79 0 0 chr4 52173367 52173405 -150154942 - AluSp SINE Alu -263 38 1 4603 142 56 42 chr4 52174183 52174226 -150154121 - MER4D LTR ERV1 0 872 831 2242 182 42 121 chr4 52174226 52174890 -150153457 - LTR9 LTR ERV1 0 612 1 4603 142 56 42 chr4 52174890 52175628 -150152719 - MER4D LTR ERV1 -41 831 108 1596 171 53 0 chr4 52175628 52175909 -150152438 - AluSg SINE Alu -14 296 1 4603 142 56 42 chr4 52175909 52176019 -150152328 - MER4D LTR ERV1 -764 108 1 3781 209 82 13 chr4 52176412 52176700 -150151647 - MER69 DNA AcHobo 0 2526 2259 2011 105 10 24 chr4 52176700 52176994 -150151353 - AluSx SINE Alu -22 290 1 3781 209 82 13 chr4 52176994 52177607 -150150740 - MER69 DNA AcHobo -267 2259 1690 1594 182 34 7 chr4 52177607 52177903 -150150444 + AluJo SINE Alu 5 308 -4 225 0 0 0 chr4 52177913 52177938 -150150409 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 3781 209 82 13 chr4 52177938 52178025 -150150322 - MER69 DNA AcHobo -844 1682 1457 1011 222 10 0 chr4 52178021 52178219 -150150128 - MER69 DNA AcHobo -945 281 82 * 187 367 93 13 chr4 52178437 52178587 -150149760 + MIR3 SINE MIR 26 187 -21 2952 136 37 50 chr4 52178591 52179203 -150149144 + MER4B LTR ERV1 1 779 0 215 301 0 65 chr4 52181845 52181938 -150146409 + L2 LINE L2 3226 3312 -1 233 351 110 0 chr4 52182287 52182441 -150145906 + L2 LINE L2 3096 3266 -6 480 230 40 16 chr4 52182888 52183014 -150145333 - L1MB8 LINE L1 -68 6110 5982 25 0 0 0 chr4 52183122 52183147 -150145200 + AT_rich Low_complexity Low_complexity 1 25 0 847 176 0 0 chr4 52183147 52183283 -150145064 - AluJo SINE Alu -176 136 1 239 231 15 15 chr4 52183286 52183351 -150144996 - MLT1K LTR MaLR -10 578 514 1718 180 97 112 chr4 52183357 52183885 -150144462 + MLT2B1 LTR ERVL 1 520 0 1498 199 76 3 chr4 52184005 52184296 -150144051 - AluJb SINE Alu 0 312 1 455 118 0 100 chr4 52184297 52184358 -150143989 - L1MA7 LINE L1 -1 6290 6243 2112 148 3 0 chr4 52184358 52184669 -150143678 - AluSx SINE Alu 0 312 1 455 118 0 100 chr4 52184669 52184717 -150143630 - L1MA7 LINE L1 -48 6243 6192 1405 163 0 119 chr4 52184891 52185024 -150143323 + AluJo SINE Alu 1 148 -155 2008 114 75 36 chr4 52185024 52185385 -150142962 + THE1C LTR MaLR 1 375 0 1405 163 0 119 chr4 52185385 52185592 -150142755 + AluJo SINE Alu 148 303 0 1173 306 22 8 chr4 52185923 52186279 -150142068 + MLT1J LTR MaLR 135 495 -16 1573 219 133 73 chr4 52186355 52186725 -150141622 + HAL1 LINE L1 1621 1967 -540 189 74 0 0 chr4 52186725 52186752 -150141595 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1573 219 133 73 chr4 52186752 52187138 -150141209 + HAL1 LINE L1 1967 2423 -84 242 155 0 103 chr4 52187430 52187488 -150140859 - L2 LINE L2 0 3272 3221 1928 140 0 31 chr4 52187516 52187837 -150140510 + AluSx SINE Alu 1 311 -1 341 247 67 0 chr4 52188027 52188116 -150140231 - MIR SINE MIR -121 141 47 701 264 23 5 chr4 52188606 52188822 -150139525 + LTR16B LTR ERVL 233 452 -12 276 234 56 37 chr4 52188956 52189063 -150139284 + LTR67 LTR ERVL 326 434 -123 277 254 16 16 chr4 52189064 52189127 -150139220 - MIR SINE MIR -180 82 20 275 268 195 44 chr4 52189570 52189775 -150138572 - MLT1J2 LTR MaLR -156 294 59 2199 117 3 0 chr4 52189968 52190268 -150138079 - AluSg SINE Alu -9 301 1 1927 135 18 7 chr4 52190268 52190549 -150137798 - AluSx SINE Alu -13 299 16 241 195 26 163 chr4 52190803 52190900 -150137447 + L1ME LINE L1 5734 5794 -327 1457 172 114 0 chr4 52190900 52191162 -150137185 + AluJo SINE Alu 1 292 -20 241 195 26 163 chr4 52191162 52191254 -150137093 + L1ME LINE L1 5794 5897 -224 755 138 17 0 chr4 52191264 52191380 -150136967 + AluJb SINE Alu 195 312 0 347 277 79 0 chr4 52191779 52191880 -150136467 + MLT1I LTR MaLR 231 339 -70 524 81 0 27 chr4 52191896 52191970 -150136377 + AluSc SINE Alu 226 297 -12 1576 179 45 14 chr4 52192167 52192457 -150135890 + AluJo SINE Alu 1 299 -13 378 0 0 0 chr4 52192539 52192581 -150135766 + (T)n Simple_repeat Simple_repeat 1 42 0 2104 139 0 0 chr4 52192688 52192990 -150135357 - AluSx SINE Alu -10 302 1 931 147 0 0 chr4 52193022 52193165 -150135182 - L1MA5 LINE L1 0 6300 6158 603 93 0 0 chr4 52193317 52193392 -150134955 + AluSc SINE Alu 223 297 -12 1956 124 0 0 chr4 52193632 52193889 -150134458 + AluSx SINE Alu 1 257 -55 1783 92 92 0 chr4 52194484 52194766 -150133581 + AluSq SINE Alu 12 316 0 482 240 10 10 chr4 52194797 52194901 -150133446 + MLT1J2 LTR MaLR 1 104 -346 2181 169 64 32 chr4 52195250 52195717 -150132630 - L1MB8 LINE L1 -6 6172 5691 1804 184 19 69 chr4 52195730 52195760 -150132587 - L1MB7 LINE L1 -29 6155 6125 2049 125 3 16 chr4 52195760 52196073 -150132274 - AluSx SINE Alu -1 311 3 1804 184 19 69 chr4 52196073 52196465 -150131882 - L1MB7 LINE L1 -59 6125 5754 5706 63 1 6 chr4 52196990 52197707 -150130640 + L1PA7 LINE L1 5418 6131 -23 1757 206 24 12 chr4 52197718 52198136 -150130211 - L1MB7 LINE L1 -941 5205 4783 2226 109 0 0 chr4 52198181 52198484 -150129863 + AluSg SINE Alu 1 303 -7 234 274 171 0 chr4 52200452 52200569 -150127778 - MIR SINE MIR -8 254 118 483 244 35 150 chr4 52200599 52200886 -150127461 + MIR SINE MIR 9 262 0 181 302 38 0 chr4 52200887 52200940 -150127407 - MIR SINE MIR -109 99 45 358 270 112 28 chr4 52201133 52201311 -150127036 - LTR33 LTR ERVL -2 519 327 260 225 11 67 chr4 52201326 52201415 -150126932 + L1MC/D LINE L1 5620 5703 -2105 847 263 85 24 chr4 52202235 52202670 -150125677 + L1MC4a LINE L1 5200 5664 -779 757 171 31 16 chr4 52202770 52202899 -150125448 - FLAM_C SINE Alu -11 132 2 4221 145 40 26 chr4 52203775 52204494 -150123853 + L1MB7 LINE L1 5454 6182 -2 825 241 29 65 chr4 52206825 52206935 -150121412 + MIR SINE MIR 15 128 -134 2241 96 0 23 chr4 52206935 52207238 -150121109 - AluSq SINE Alu -17 296 1 825 241 29 65 chr4 52207238 52207372 -150120975 + MIR SINE MIR 128 250 -12 188 325 147 64 chr4 52208710 52209350 -150118997 + L2 LINE L2 2285 2977 -337 297 0 0 0 chr4 52209475 52209508 -150118839 + (CA)n Simple_repeat Simple_repeat 2 34 0 345 213 12 12 chr4 52210152 52210232 -150118115 - MER103 DNA DNA -10 156 77 949 180 0 44 chr4 52210352 52210535 -150117812 - AluJo SINE Alu -137 175 1 613 193 69 21 chr4 52210539 52210684 -150117663 + L2 LINE L2 3151 3302 -11 548 269 63 36 chr4 52210830 52211018 -150117329 + MIR SINE MIR 50 241 -21 325 190 8 91 chr4 52212052 52212069 -150116278 - L1MA4A LINE L1 -5 6298 6282 363 217 36 43 chr4 52212069 52212123 -150116224 - L1PB4 LINE L1 0 6156 6103 4461 100 35 0 chr4 52212123 52212722 -150115625 - L1PA13 LINE L1 -19 6144 5525 363 217 36 43 chr4 52212722 52212805 -150115542 - L1PB4 LINE L1 -53 6103 6020 261 316 26 9 chr4 52214596 52214710 -150113637 + L1MC4a LINE L1 5859 5974 -1834 230 114 45 0 chr4 52215055 52215099 -150113248 + L1M LINE L1 5383 5428 -693 398 273 145 32 chr4 52215455 52215766 -150112581 + L1ME4a LINE L1 5774 6119 -2 220 209 0 0 chr4 52216222 52216265 -150112082 - L2 LINE L2 -6 3266 3224 525 294 47 18 chr4 52216624 52216794 -150111553 + MIR3 SINE MIR 13 187 -21 1625 148 59 11 chr4 52217543 52217813 -150110534 - AluJo SINE Alu -24 288 6 21 0 0 0 chr4 52218024 52218045 -150110302 + AT_rich Low_complexity Low_complexity 1 21 0 376 171 0 0 chr4 52218336 52218406 -150109941 - L1PB4 LINE L1 -2 6154 6085 1490 162 72 0 chr4 52218506 52218771 -150109576 - AluJo SINE Alu -5 307 24 250 280 67 0 chr4 52220320 52220395 -150107952 - L1MC5 LINE L1 -50 7911 7832 37690 92 8 10 chr4 52220430 52226575 -150101772 - L1PA6 LINE L1 -6 6148 14 1613 180 22 41 chr4 52227124 52227441 -150100906 + AluJb SINE Alu 1 311 -1 2236 187 5 3 chr4 52227674 52228064 -150100283 - L1MC1 LINE L1 -17 6316 5926 1011 254 105 55 chr4 52228306 52229096 -150099251 - L1MEd LINE L1 -4813 1497 634 32 0 0 0 chr4 52230144 52230176 -150098171 + AT_rich Low_complexity Low_complexity 1 32 0 2377 134 28 100 chr4 52230559 52230791 -150097556 - MSTA LTR MaLR 0 428 181 2007 92 34 24 chr4 52230791 52231084 -150097263 - AluSc SINE Alu -12 297 2 2377 134 28 100 chr4 52231084 52231168 -150097179 - MSTA LTR MaLR -247 181 93 207 0 0 0 chr4 52231168 52231191 -150097156 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2377 134 28 100 chr4 52231191 52231334 -150097013 - MSTA LTR MaLR -335 93 1 673 290 147 12 chr4 52232009 52232486 -150095861 - L2 LINE L2 0 3313 2766 849 86 22 79 chr4 52232516 52232532 -150095815 - L1PB1 LINE L1 -1 6150 6135 2045 133 0 13 chr4 52232532 52232833 -150095514 - AluSx SINE Alu -15 297 1 849 86 22 79 chr4 52232833 52232955 -150095392 - L1PB1 LINE L1 -16 6135 6020 15192 152 54 9 chr4 52232969 52233338 -150095009 - L1PB1 LINE L1 -4 6863 6512 297 0 0 0 chr4 52233338 52233371 -150094976 + (CA)n Simple_repeat Simple_repeat 2 34 0 15192 152 54 9 chr4 52233371 52236327 -150092020 - L1PB1 LINE L1 -355 6512 3689 2219 116 0 7 chr4 52236327 52236628 -150091719 - AluSp SINE Alu -12 301 3 15192 152 54 9 chr4 52236628 52239253 -150089094 - L1PB1 LINE L1 -3178 3689 636 1215 160 0 0 chr4 52239255 52239455 -150088892 - L1PB1 LINE L1 -6663 200 1 3583 95 6 4 chr4 52239462 52239955 -150088392 - L1PB2 LINE L1 -116 6035 5542 1053 305 52 12 chr4 52239961 52240364 -150087983 - L2 LINE L2 -540 2774 2356 1925 93 38 7 chr4 52240508 52240797 -150087550 - L1MA1 LINE L1 -6 6296 5999 437 275 37 25 chr4 52241136 52241334 -150087013 - L1ME3A LINE L1 -257 5905 5706 4225 186 25 52 chr4 52242055 52243051 -150085296 + LTR5 LTR ERVK 1 969 0 994 281 242 16 chr4 52244117 52245072 -150083275 - L2 LINE L2 -34 3279 2126 307 265 129 47 chr4 52245908 52246078 -150082269 - MIR SINE MIR -32 230 47 624 280 107 33 chr4 52247605 52247848 -150080499 + MIR SINE MIR 2 262 0 543 280 136 14 chr4 52249082 52249296 -150079051 - LTR33 LTR ERVL -276 245 6 1349 233 81 40 chr4 52249587 52250081 -150078266 + LTR33A LTR ERVL 1 514 -9 1912 156 7 3 chr4 52250242 52250537 -150077810 + AluSx SINE Alu 1 296 -16 714 243 98 27 chr4 52251232 52251589 -150076758 - MLT1G1 LTR MaLR -5 590 116 369 247 11 0 chr4 52251618 52251711 -150076636 - MLT1G1 LTR MaLR -501 94 1 2317 84 0 7 chr4 52251730 52252080 -150076267 + AluY SINE Alu 1 311 0 215 708 0 0 chr4 52252260 52252407 -150075940 + (TA)n Simple_repeat Simple_repeat 1 147 0 318 258 0 41 chr4 52252409 52252506 -150075841 - L1MC4 LINE L1 -1336 6706 6614 9264 32 0 3 chr4 52252804 52254699 -150073648 - L1PA4 LINE L1 -3 6152 4259 626 286 42 46 chr4 52254829 52255088 -150073259 - MLT1J LTR MaLR -249 262 5 508 222 117 44 chr4 52255102 52255413 -150072934 - MLT1G1 LTR MaLR -36 559 131 499 303 35 86 chr4 52255413 52255869 -150072478 - L2 LINE L2 -852 2462 2030 455 206 120 28 chr4 52255882 52256083 -150072264 - MLT1B LTR MaLR 0 549 322 621 215 41 35 chr4 52256136 52256308 -150072039 + MIR SINE MIR 67 239 -23 191 88 29 0 chr4 52256788 52256822 -150071525 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 32 26 0 0 chr4 52256890 52256929 -150071418 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr4 52257121 52257149 -150071198 + AT_rich Low_complexity Low_complexity 1 28 0 194 337 0 24 chr4 52257326 52257409 -150070938 - L2 LINE L2 -4 3268 3188 259 260 0 65 chr4 52257619 52257696 -150070651 + L2 LINE L2 3242 3313 0 228 377 19 9 chr4 52258217 52258323 -150070024 + MIR SINE MIR 4 110 -152 1796 142 30 82 chr4 52258471 52258791 -150069556 + MER7A DNA MER2_type 2 337 -2701 1631 131 79 21 chr4 52258791 52259120 -150069227 - L1MA6 LINE L1 0 6300 5953 213 39 0 0 chr4 52259122 52259148 -150069199 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 311 70 0 0 chr4 52259148 52259191 -150069156 - L1PA3 LINE L1 -10 6145 6103 1796 142 30 82 chr4 52259191 52259232 -150069115 + MER7A DNA MER2_type 336 346 0 300 53 0 0 chr4 52259369 52259407 -150068940 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 768 297 70 31 chr4 52259407 52259852 -150068495 - L2 LINE L2 -13 3300 2839 669 290 89 50 chr4 52260339 52260866 -150067481 - L2 LINE L2 -7 3306 2755 279 191 6 49 chr4 52261339 52261501 -150066846 + (TA)n Simple_repeat Simple_repeat 2 156 0 1213 210 33 57 chr4 52261516 52261882 -150066465 - MLT1B LTR MaLR -19 371 15 1252 291 138 23 chr4 52262411 52262590 -150065757 + L2 LINE L2 2564 2721 -592 300 53 0 0 chr4 52262590 52262628 -150065719 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1252 291 138 23 chr4 52262628 52263128 -150065219 + L2 LINE L2 2721 3313 0 315 85 0 0 chr4 52264134 52264181 -150064166 + (CAT)n Simple_repeat Simple_repeat 1 47 0 565 271 102 0 chr4 52264195 52264372 -150063975 - MIR SINE MIR -4 258 64 742 235 6 12 chr4 52264417 52264583 -150063764 + MER5B DNA MER1_type 7 171 -7 2197 117 0 0 chr4 52264646 52264937 -150063410 - AluSx SINE Alu -21 291 1 694 265 84 14 chr4 52265289 52265504 -150062843 + MIR SINE MIR 14 243 -19 9485 155 18 11 chr4 52265875 52266761 -150061586 - L1MA8 LINE L1 -164 7546 6668 1275 168 35 0 chr4 52266761 52266987 -150061360 + MER46A DNA MER2_type 2 235 -1 9485 155 18 11 chr4 52266987 52268640 -150059707 - L1MA8 LINE L1 -1042 6668 4991 2136 125 0 23 chr4 52268641 52268946 -150059401 - AluSq SINE Alu -4 309 12 2916 3 0 0 chr4 52268975 52269316 -150059031 - L1HS LINE L1 0 6155 5815 2610 227 45 11 chr4 52269307 52270153 -150058194 - L1MA8 LINE L1 -2571 4994 4120 * 1726 99 25 79 chr4 52270157 52270524 -150057823 - MER4A LTR ERV1 0 664 262 672 73 0 10 chr4 52270526 52270622 -150057725 - MER4A LTR ERV1 -567 97 3 2444 254 62 23 chr4 52270629 52272727 -150055620 - L1MA8 LINE L1 -3451 4114 2012 2310 242 126 50 chr4 52272730 52273883 -150054464 - L1MA8 LINE L1 -5786 1703 464 217 254 18 0 chr4 52273933 52273988 -150054359 + (TATG)n Simple_repeat Simple_repeat 4 59 0 459 266 95 23 chr4 52273992 52274255 -150054092 - L1ME4a LINE L1 -225 5896 5615 25 0 0 0 chr4 52274846 52274871 -150053476 + AT_rich Low_complexity Low_complexity 1 25 0 453 246 9 0 chr4 52275254 52275364 -150052983 - AluJb SINE Alu -2 310 200 1615 193 14 3 chr4 52275372 52275667 -150052680 - AluJo SINE Alu -14 298 1 2454 121 3 0 chr4 52276235 52276600 -150051747 - THE1C LTR MaLR -2 373 8 1616 219 180 6 chr4 52276653 52277136 -150051211 + MLT1F1 LTR MaLR 1 567 0 211 200 77 46 chr4 52277181 52277246 -150051101 - L2 LINE L2 -11 3261 3195 1805 259 62 16 chr4 52278129 52278951 -150049396 + L1M4 LINE L1 2596 3455 -2691 1149 233 49 3 chr4 52279006 52279293 -150049054 + MLT2F LTR ERVL 362 661 -2 1159 234 82 33 chr4 52279293 52279450 -150048897 + L1M4 LINE L1 3499 3647 -2499 2040 199 58 54 chr4 52279450 52279931 -150048416 + MLT2B1 LTR ERVL 1 486 -34 216 0 0 0 chr4 52279931 52279955 -150048392 + (CA)n Simple_repeat Simple_repeat 2 25 0 2040 199 58 54 chr4 52279955 52279991 -150048356 + MLT2B1 LTR ERVL 486 520 0 1159 234 82 33 chr4 52279991 52280258 -150048089 + L1M4 LINE L1 3647 3949 -2197 1306 54 0 6 chr4 52280258 52280424 -150047923 - L1PA4 LINE L1 -5 6150 5986 814 53 0 0 chr4 52280424 52280537 -150047810 + L1PA4 LINE L1 5861 5973 -182 750 289 62 3 chr4 52280561 52280865 -150047482 + L1M4 LINE L1 3951 4272 -1874 30555 57 4 5 chr4 52280905 52284996 -150043351 + L1P LINE L1 7 4093 -2053 15022 62 62 3 chr4 52284984 52287076 -150041271 + L1P LINE L1 1 2215 -3931 * 821 38 0 0 chr4 52287077 52287183 -150041164 - L1P LINE L1 -1480 4666 4561 16515 43 3 1 chr4 52287607 52289775 -150038572 + L1P LINE L1 2202 4374 -1772 850 156 0 0 chr4 55289775 55289952 -147038395 - ALR/Alpha Satellite centromeric 0 177 1 427 247 0 0 chr4 55289953 55290042 -147038305 - HERVI LTR ERV1 -4926 2859 2771 1154 167 7 3 chr4 55290049 55300248 -147028099 - ALR/Alpha Satellite centromeric 0 10236 1 1126 157 10 3 chr4 55300393 55302223 -147026124 - ALR/Alpha Satellite centromeric 0 1843 1 7323 253 17 16 chr4 55302224 55303949 -147024398 - HERVI LTR ERV1 -4926 2859 1132 1310 278 111 45 chr4 55304272 55304895 -147023452 - HERVI LTR ERV1 -6647 1138 475 1202 155 4 0 chr4 55304907 55307711 -147020636 + ALR/Alpha Satellite centromeric 1 2814 -75 5059 179 42 3 chr4 55307984 55309028 -147019319 - L1MB5 LINE L1 0 6174 5197 500 296 163 42 chr4 55309593 55309833 -147018514 - MLT1K LTR MaLR -164 424 156 3354 213 33 25 chr4 55309835 55309888 -147018459 - L1M4 LINE L1 -548 5636 5585 16493 176 13 8 chr4 55309888 55313695 -147014652 - L1PA13 LINE L1 -2 6161 2346 3354 213 33 25 chr4 55313695 55314621 -147013726 - L1M4 LINE L1 -599 5585 4650 455 200 12 12 chr4 55314726 55314811 -147013536 + L2 LINE L2 3229 3313 0 351 290 68 68 chr4 55314865 55315086 -147013261 + MLT1K LTR MaLR 22 242 -346 268 380 36 26 chr4 55315321 55315513 -147012834 - LTR67 LTR ERVL -9 548 355 1907 171 97 3 chr4 55315945 55316337 -147012010 - MLT1D LTR MaLR -1 504 76 248 361 89 0 chr4 55316355 55316513 -147011834 - MIR SINE MIR -61 201 30 200 238 0 0 chr4 55317492 55317534 -147010813 - L2 LINE L2 -15 3298 3257 316 264 100 9 chr4 55317832 55317942 -147010405 + L2 LINE L2 2931 3050 -222 687 280 54 6 chr4 55318037 55318205 -147010142 - MER91A DNA MER1_type -16 180 5 418 221 8 41 chr4 55318299 55318421 -147009926 + L2 LINE L2 3195 3312 -1 190 321 37 12 chr4 55318780 55318861 -147009486 + MIR3 SINE MIR 113 195 -13 420 20 0 0 chr4 55319115 55319164 -147009183 + (TC)n Simple_repeat Simple_repeat 2 50 0 264 122 0 0 chr4 55319164 55319205 -147009142 + (T)n Simple_repeat Simple_repeat 1 41 0 851 269 35 19 chr4 55320250 55320507 -147007840 + MIR SINE MIR 2 262 0 2401 34 47 3 chr4 55322462 55322760 -147005587 + AluY SINE Alu 1 311 0 1673 141 24 4 chr4 55322970 55323225 -147005122 + AluSx SINE Alu 1 260 -52 1637 170 3 7 chr4 55323452 55323758 -147004589 - AluJb SINE Alu 0 305 1 2202 102 3 0 chr4 55323869 55324154 -147004193 + AluSx SINE Alu 1 286 -26 894 125 36 0 chr4 55324175 55324343 -147004004 + GA-rich Low_complexity Low_complexity 3 176 0 524 269 126 31 chr4 55324364 55324587 -147003760 + MIR SINE MIR 18 261 -1 504 346 13 6 chr4 55325531 55325690 -147002657 + MIR3 SINE MIR 37 196 -12 211 207 52 17 chr4 55326061 55326119 -147002228 - L2 LINE L2 -7 3265 3206 191 336 55 81 chr4 55326431 55326666 -147001681 + L3 LINE CR1 1342 1570 -7 22 35 0 0 chr4 55326689 55326718 -147001629 + AT_rich Low_complexity Low_complexity 1 29 0 227 210 65 0 chr4 55327016 55327078 -147001269 + G-rich Low_complexity Low_complexity 1 66 0 344 302 156 72 chr4 55327960 55328712 -146999635 - L1M2 LINE L1 -5640 1209 395 206 217 0 0 chr4 55329235 55329281 -146999066 + C-rich Low_complexity Low_complexity 2 47 0 1759 172 13 19 chr4 55329590 55329898 -146998449 + AluJo SINE Alu 1 306 -6 838 171 85 28 chr4 55331017 55331193 -146997154 - MER5A DNA MER1_type -2 187 2 1951 185 36 11 chr4 55331325 55331681 -146996666 - MLT1A1 LTR MaLR 0 365 1 200 270 11 45 chr4 55332932 55333021 -146995326 + G-rich Low_complexity Low_complexity 4 89 0 811 256 0 24 chr4 55335010 55335221 -146993126 - L1MEd LINE L1 -5913 206 1 840 277 117 16 chr4 55335512 55335887 -146992460 - MLT1L LTR MaLR 0 615 203 743 199 15 0 chr4 55336470 55336601 -146991746 - FLAM_A SINE Alu 0 133 1 241 284 156 28 chr4 55336755 55336864 -146991483 + L2 LINE L2 3142 3264 -8 432 191 0 86 chr4 55338213 55338318 -146990029 + LTR67 LTR ERVL 454 549 -8 252 86 0 0 chr4 55338682 55338717 -146989630 + (TG)n Simple_repeat Simple_repeat 2 36 0 398 191 269 21 chr4 55338786 55338927 -146989420 - L1ME1 LINE L1 -6 6160 5985 307 287 9 46 chr4 55339289 55339397 -146988950 + MIR SINE MIR 37 140 -122 796 266 185 63 chr4 55339415 55339859 -146988488 - L2 LINE L2 -5 3308 2811 945 231 7 11 chr4 55340581 55340794 -146987553 - MIR SINE MIR -44 218 8 569 278 48 29 chr4 55341515 55341724 -146986623 - MIR SINE MIR -3 259 47 487 248 76 14 chr4 55342455 55342600 -146985747 - MER5B DNA MER1_type -13 165 12 547 221 44 15 chr4 55342736 55342872 -146985475 - MIR SINE MIR -1 261 122 266 343 76 30 chr4 55343393 55343591 -146984756 + L2 LINE L2 1729 1935 -1379 1231 168 45 0 chr4 55343653 55343873 -146984474 + MER46A DNA MER2_type 1 230 -6 359 243 48 10 chr4 55343884 55343987 -146984360 - L2 LINE L2 -64 3249 3143 1143 127 127 31 chr4 55343989 55344249 -146984098 + L1MB8 LINE L1 5890 6174 -4 455 289 192 23 chr4 55344249 55344575 -146983772 - L2 LINE L2 -165 3148 2765 24 32 0 0 chr4 55345299 55345330 -146983017 + AT_rich Low_complexity Low_complexity 1 31 0 232 294 44 0 chr4 55345462 55345530 -146982817 + MIR SINE MIR 30 100 -108 1530 277 45 16 chr4 55346708 55346976 -146981371 - L2 LINE L2 -1 3312 3053 679 100 36 0 chr4 55346976 55347086 -146981261 - L1MA7 LINE L1 0 6291 6178 1530 277 45 16 chr4 55347086 55347349 -146980998 - L2 LINE L2 -260 3053 2764 385 300 109 65 chr4 55347365 55347587 -146980760 - L1M4 LINE L1 -1164 4982 4738 986 171 81 19 chr4 55347587 55347798 -146980549 + MER58A DNA MER1_type 1 224 0 385 300 109 65 chr4 55347798 55347915 -146980432 - L1M4 LINE L1 -1408 4738 4628 234 0 0 0 chr4 55348487 55348513 -146979834 + (A)n Simple_repeat Simple_repeat 1 26 0 2273 137 76 13 chr4 55349307 55349701 -146978646 - MSTA LTR MaLR -9 419 1 323 221 35 72 chr4 55349873 55350060 -146978287 - MIR SINE MIR -14 248 29 22 0 0 0 chr4 55351967 55351989 -146976358 + AT_rich Low_complexity Low_complexity 1 22 0 303 28 0 0 chr4 55352143 55352179 -146976168 + (ATG)n Simple_repeat Simple_repeat 1 36 0 325 328 51 60 chr4 55352193 55352428 -146975919 - L1ME2 LINE L1 -252 5912 5680 6885 164 152 32 chr4 55352599 55354164 -146974183 - MER52A LTR ERV1 -2 1753 1 2251 108 0 16 chr4 55354604 55354911 -146973436 + AluSg SINE Alu 1 302 -8 25 0 0 0 chr4 55354928 55354953 -146973394 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr4 55356067 55356105 -146972242 + AT_rich Low_complexity Low_complexity 1 38 0 232 179 0 0 chr4 55356314 55356353 -146971994 - L2 LINE L2 -3 3310 3272 192 273 0 0 chr4 55356389 55356433 -146971914 - L2 LINE L2 -44 3269 3226 189 244 11 67 chr4 55356662 55356752 -146971595 + MIR SINE MIR 50 134 -74 567 254 146 35 chr4 55358085 55358372 -146969975 + L2 LINE L2 1738 2056 -1258 237 298 99 16 chr4 55358456 55358577 -146969770 + MIR SINE MIR 11 141 -121 189 317 168 18 chr4 55358714 55358881 -146969466 - MIR SINE MIR -39 223 32 651 221 197 19 chr4 55359194 55359402 -146968945 + MIR SINE MIR 18 262 0 740 224 165 6 chr4 55361237 55361595 -146966752 - L1MB7 LINE L1 -30 6154 5788 3317 26 5 12 chr4 55361931 55362349 -146965998 + L1PA4 LINE L1 5741 6155 0 1099 229 17 4 chr4 55362357 55362593 -146965754 - MER8 DNA MER2_type 0 239 1 2079 112 3 3 chr4 55365092 55365387 -146962960 + AluSx SINE Alu 1 295 -17 2165 113 7 0 chr4 55366616 55366908 -146961439 + AluY SINE Alu 1 294 -17 225 65 0 0 chr4 55367428 55367459 -146960888 + (A)n Simple_repeat Simple_repeat 1 31 0 799 168 0 0 chr4 55367653 55367778 -146960569 + FLAM_C SINE Alu 1 125 -8 2184 81 3 3 chr4 55368253 55368563 -146959784 + AluY SINE Alu 1 310 0 461 271 26 13 chr4 55369285 55369436 -146958911 + L1M4 LINE L1 4072 4224 -1922 213 185 0 0 chr4 55369742 55369807 -146958540 + (TA)n Simple_repeat Simple_repeat 2 66 0 923 303 112 67 chr4 55370812 55371842 -146956505 - L2 LINE L2 -463 2851 1776 21 0 0 0 chr4 55372475 55372496 -146955851 + AT_rich Low_complexity Low_complexity 1 21 0 2085 92 10 14 chr4 55372875 55373167 -146955180 - AluSc SINE Alu -18 291 1 186 71 0 0 chr4 55373660 55373688 -146954659 + (T)n Simple_repeat Simple_repeat 1 28 0 2016 91 77 18 chr4 55374226 55374511 -146953836 + AluSx SINE Alu 1 302 -10 2084 124 7 13 chr4 55374592 55374898 -146953449 + AluSx SINE Alu 1 304 -8 371 203 87 22 chr4 55374928 55375066 -146953281 - MER104 DNA Tc2 -10 170 24 851 277 70 30 chr4 55376937 55377366 -146950981 - L1MC4a LINE L1 -1905 5903 5458 1059 169 68 37 chr4 55377903 55378199 -146950148 - MER33 DNA MER1_type -28 296 1 298 265 72 51 chr4 55378790 55378965 -146949382 - MIR SINE MIR -64 198 16 1971 112 18 4 chr4 55379180 55379491 -146948856 - AluSx SINE Alu 0 315 1 185 221 59 44 chr4 55379731 55379799 -146948548 - L2 LINE L2 -193 3079 3011 192 301 75 54 chr4 55380179 55380272 -146948075 - L2 LINE L2 -2 3311 3217 1537 203 49 23 chr4 55380593 55380943 -146947404 - MLT1A1 LTR MaLR 0 365 7 252 0 0 0 chr4 55381329 55381357 -146946990 + (A)n Simple_repeat Simple_repeat 1 28 0 28 0 0 0 chr4 55382328 55382356 -146945991 + AT_rich Low_complexity Low_complexity 1 28 0 512 367 28 14 chr4 55382433 55382930 -146945417 + L2 LINE L2 2549 3055 -217 2147 221 181 20 chr4 55383421 55383816 -146944531 + L1MC4 LINE L1 6813 7143 -899 1876 199 104 7 chr4 55383816 55384239 -146944108 + MER88 LTR ERVL 1 464 0 2147 221 181 20 chr4 55384239 55384893 -146943454 + L1MC4 LINE L1 7143 8031 -11 23 0 0 0 chr4 55385895 55385918 -146942429 + AT_rich Low_complexity Low_complexity 1 23 0 1180 173 59 55 chr4 55386220 55386440 -146941907 + AluJo SINE Alu 1 221 -91 219 337 119 0 chr4 55387062 55387163 -146941184 - MIR SINE MIR -65 143 31 4712 253 96 15 chr4 55387725 55390552 -146937795 - L1MEc LINE L1 -3161 3054 36 288 263 13 0 chr4 55390972 55391048 -146937299 - MIR3 SINE MIR -23 185 109 22 0 0 0 chr4 55391258 55391280 -146937067 + AT_rich Low_complexity Low_complexity 1 22 0 218 368 23 0 chr4 55392147 55392234 -146936113 - L3b LINE CR1 -173 1410 1322 586 250 186 15 chr4 55392617 55392821 -146935526 + MIR SINE MIR 14 252 -10 354 231 51 68 chr4 55398648 55398765 -146929582 - MIR SINE MIR -14 248 134 300 111 0 0 chr4 55399234 55399279 -146929068 + (TTA)n Simple_repeat Simple_repeat 2 46 0 599 297 105 39 chr4 55402719 55403109 -146925238 - L1MC4 LINE L1 -30 8012 7597 240 180 0 60 chr4 55403336 55403386 -146924961 + L2 LINE L2 3178 3224 -89 330 287 32 0 chr4 55405763 55405857 -146922490 - MIR SINE MIR -132 130 34 1634 217 165 23 chr4 55405952 55406468 -146921879 - L1ME1 LINE L1 -136 6030 5442 372 325 29 53 chr4 55406958 55407164 -146921183 - MIR SINE MIR -41 221 21 1563 221 86 68 chr4 55407669 55408180 -146920167 - MLT2B1 LTR ERVL 0 520 1 13347 149 58 17 chr4 55408180 55408481 -146919866 - ERVL-B1 LTR ERVL -7 5757 5470 1702 182 45 28 chr4 55408481 55408839 -146919508 + MLT1A1 LTR MaLR 1 364 -1 13347 149 58 17 chr4 55408839 55410882 -146917465 - ERVL-B1 LTR ERVL -294 5470 3316 2480 200 22 0 chr4 55410884 55411333 -146917014 - ERVL-B1 LTR ERVL -2762 3002 2544 2093 140 72 35 chr4 55411375 55411912 -146916435 - MLT2A2 LTR ERVL 0 554 1 364 102 0 0 chr4 55411915 55411964 -146916383 - ERVL-B1 LTR ERVL -4604 1160 1112 815 93 0 0 chr4 55412307 55412414 -146915933 - ERVL-B1 LTR ERVL -3224 2540 2434 * 8789 210 31 24 chr4 55412409 55412621 -146915726 - ERVL-B1 LTR ERVL -3606 2048 1839 2194 103 13 7 chr4 55412621 55412922 -146915425 - AluSg SINE Alu -7 303 1 8789 210 31 24 chr4 55412922 55413809 -146914538 - ERVL-B1 LTR ERVL -3815 1839 960 2262 116 0 0 chr4 55413809 55414110 -146914237 - AluSx SINE Alu -11 301 1 8789 210 31 24 chr4 55414110 55415148 -146913199 - ERVL-B1 LTR ERVL -4694 960 1 302 95 0 95 chr4 55415148 55415211 -146913136 - MLT2B1 LTR ERVL 0 520 464 355 158 35 9 chr4 55415213 55415327 -146913020 + (TA)n Simple_repeat Simple_repeat 1 117 0 25 31 0 0 chr4 55415347 55415379 -146912968 + AT_rich Low_complexity Low_complexity 1 32 0 241 232 14 14 chr4 55415499 55415568 -146912779 + (TA)n Simple_repeat Simple_repeat 2 70 0 2126 218 54 19 chr4 55415598 55416062 -146912285 - MLT2B1 LTR ERVL -40 480 1 517 208 100 0 chr4 55416066 55416186 -146912161 - MLT1B LTR MaLR -256 134 3 1041 258 48 16 chr4 55417191 55417505 -146910842 + L1ME3A LINE L1 5842 6165 -5 658 205 31 45 chr4 55417908 55418124 -146910223 - MIR SINE MIR -67 195 11 1754 145 10 38 chr4 55419300 55419589 -146908758 + AluJo SINE Alu 2 282 -30 546 43 0 0 chr4 55419592 55419661 -146908686 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 868 124 8 0 chr4 55419668 55419789 -146908558 + AluSq/x SINE Alu 1 122 -190 309 315 0 0 chr4 55419789 55419878 -146908469 - L1MC4 LINE L1 -1340 6702 6614 459 152 0 0 chr4 55419878 55419957 -146908390 + (CA)n Simple_repeat Simple_repeat 2 80 0 974 158 0 12 chr4 55419958 55420122 -146908225 + AluSg/x SINE Alu 138 299 -13 808 283 84 19 chr4 55420388 55420710 -146907637 + L1MCc LINE L1 88 430 -5993 537 275 135 0 chr4 55420718 55420911 -146907436 - LTR40c LTR ERVL -226 239 21 42789 42 21 2 chr4 55421001 55427016 -146901331 - L1PA3 LINE L1 0 6155 22 397 195 11 11 chr4 55428756 55428843 -146899504 - MER102b DNA MER1_type -2 339 253 674 176 21 117 chr4 55428965 55429153 -146899194 - MIR SINE MIR -70 192 23 346 307 63 8 chr4 55429416 55429543 -146898804 - MARNA DNA Mariner -54 532 399 * 421 284 101 7 chr4 55429440 55429588 -146898759 + MARNA DNA Mariner 85 246 -340 2835 159 16 5 chr4 55429740 55430308 -146898039 + MER41B LTR ERV1 1 635 0 1654 187 53 36 chr4 55430596 55430955 -146897392 - MLT1A1 LTR MaLR 0 365 1 722 160 8 0 chr4 55430955 55431080 -146897267 - MLT1A1-int LTR MaLR 0 1735 1610 2302 157 72 5 chr4 55431093 55431494 -146896853 + MSTA LTR MaLR 1 428 0 8445 185 39 5 chr4 55431508 55433063 -146895284 + MSTA-int LTR MaLR 45 1651 0 1758 173 104 6 chr4 55433063 55433428 -146894919 + MSTA LTR MaLR 1 401 -27 38092 70 48 1 chr4 55433428 55439285 -146889062 - L1PA5 LINE L1 -6 6148 11 1851 289 60 18 chr4 55439338 55440023 -146888324 - MLT1A1-int LTR MaLR -138 1513 797 2216 139 92 8 chr4 55440038 55440420 -146887927 + MSTA LTR MaLR 1 414 -14 1800 199 21 12 chr4 55440450 55440787 -146887560 - MLT1A1-int LTR MaLR -945 790 451 3056 175 58 12 chr4 55440888 55441478 -146886869 - LTR24C LTR ERV1 0 635 19 424 165 10 78 chr4 55441497 55441600 -146886747 - FLAM_C SINE Alu -21 122 27 1833 183 39 74 chr4 55441614 55441989 -146886358 - MLT1A1-int LTR MaLR -1284 451 93 2114 101 11 0 chr4 55441989 55442267 -146886080 + AluY SINE Alu 1 281 -30 1833 183 39 74 chr4 55442267 55442349 -146885998 - MLT1A1-int LTR MaLR -1642 93 10 1560 174 106 30 chr4 55442352 55442543 -146885804 - MLT1A1 LTR MaLR 0 365 190 2885 202 25 20 chr4 55442543 55443097 -146885250 - MER41D LTR ERV1 0 557 1 1560 174 106 30 chr4 55443097 55443244 -146885103 - MLT1A1 LTR MaLR -175 190 1 433 276 32 16 chr4 55443293 55443416 -146884931 - MIR SINE MIR -28 234 110 236 231 77 15 chr4 55443416 55443481 -146884866 + MER63A DNA MER1_type 24 92 0 541 212 183 15 chr4 55443515 55443760 -146884587 + MER54A LTR ERVL 113 554 -264 455 282 19 0 chr4 55443998 55444101 -146884246 + MER63A DNA MER1_type 99 203 -7 430 288 76 15 chr4 55444817 55444949 -146883398 + MIR3 SINE MIR 46 185 -23 681 233 7 0 chr4 55445052 55445202 -146883145 - MIR SINE MIR -1 261 111 532 194 166 33 chr4 55445840 55446051 -146882296 + LTR40c LTR ERVL 1 239 -226 243 0 0 0 chr4 55446346 55446373 -146881974 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2143 131 7 0 chr4 55447066 55447372 -146880975 + AluY SINE Alu 1 308 -3 758 336 126 16 chr4 55447529 55448074 -146880273 - L2 LINE L2 0 3313 2710 2396 146 22 19 chr4 55448098 55448508 -146879839 - MER65A LTR ERV1 -34 411 1 1680 156 6 48 chr4 55448718 55449033 -146879314 - AluJo SINE Alu 0 312 11 614 160 84 15 chr4 55450449 55450580 -146877767 + MER53 DNA DNA 1 140 -49 4728 37 7 2 chr4 55450580 55451163 -146877184 - L1P2 LINE L1 -348 5807 5222 23 0 0 0 chr4 55451163 55451186 -146877161 + AT_rich Low_complexity Low_complexity 1 23 0 1005 122 11 11 chr4 55451980 55452005 -146876342 + (TTCC)n Simple_repeat Simple_repeat 1 205 0 1005 122 11 11 chr4 55452005 55452185 -146876162 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1932 162 7 0 chr4 55452273 55452570 -146875777 - AluJb SINE Alu -13 299 1 591 126 0 0 chr4 55452720 55452807 -146875540 + L1PA8 LINE L1 6085 6171 -1 19183 141 7 8 chr4 55453164 55454912 -146873435 - L1PA10 LINE L1 -6 7600 5852 2038 153 0 6 chr4 55454912 55455226 -146873121 - AluSx SINE Alu 0 312 1 19183 141 7 8 chr4 55455226 55457290 -146871057 - L1PA10 LINE L1 -1754 5852 3790 846 40 0 20 chr4 55457290 55457424 -146870923 - L1PA3 LINE L1 0 6155 6048 2161 195 10 2 chr4 55457425 55457836 -146870511 - L1PA10 LINE L1 -3784 3800 3387 6260 57 6 0 chr4 55457937 55458805 -146869542 + L1P2 LINE L1 4603 5473 -681 8226 41 41 0 chr4 55458805 55460489 -146867858 + L1PA5 LINE L1 4427 6145 -9 34 0 0 0 chr4 55460511 55460545 -146867802 + AT_rich Low_complexity Low_complexity 1 34 0 1660 167 25 0 chr4 55460612 55460893 -146867454 - MLT2B1 LTR ERVL -232 288 1 251 306 37 28 chr4 55460893 55461001 -146867346 + L2 LINE L2 2644 2752 -562 300 111 63 48 chr4 55461034 55461097 -146867250 - LTR36 LTR ERV1 0 611 548 28878 80 1 0 chr4 55461198 55464954 -146863393 - L1P LINE L1 -2353 3793 34 1218 244 26 8 chr4 55464954 55465220 -146863127 + MLT2B1 LTR ERVL 250 520 0 612 296 64 72 chr4 55465313 55465813 -146862534 - L2 LINE L2 -774 2540 2045 1557 235 143 2 chr4 55465816 55466262 -146862085 + LTR33 LTR ERVL 1 509 -12 717 214 0 0 chr4 55467558 55467675 -146860672 + FLAM_C SINE Alu 2 118 -25 22 0 0 0 chr4 55467675 55467697 -146860650 + AT_rich Low_complexity Low_complexity 1 22 0 1372 173 4 37 chr4 55470718 55470989 -146857358 - AluJo SINE Alu -50 262 1 4500 237 23 65 chr4 55471584 55473673 -146854674 - L1PA10 LINE L1 -4185 3399 52 5708 181 77 36 chr4 55473675 55475185 -146853162 - L1MA8 LINE L1 -1 6290 4685 186 43 0 0 chr4 55475185 55475208 -146853139 + (TTA)n Simple_repeat Simple_repeat 2 24 0 5708 181 77 36 chr4 55475208 55475391 -146852956 - L1MA8 LINE L1 -1606 4685 4511 833 238 0 0 chr4 55475404 55475551 -146852796 - AluJo SINE Alu -33 279 133 872 211 39 22 chr4 55475630 55475842 -146852505 - MLT1H1 LTR MaLR -294 296 83 3838 142 12 40 chr4 55475842 55476851 -146851496 + L1MA5 LINE L1 4619 5594 -706 815 219 28 51 chr4 55476851 55477029 -146851318 + FAM SINE Alu 1 174 -1 3838 142 12 40 chr4 55477029 55477056 -146851291 + L1MA5 LINE L1 5594 5620 -680 1518 165 4 24 chr4 55477073 55477328 -146851019 + AluJo SINE Alu 1 250 -62 1662 158 83 20 chr4 55477341 55477690 -146850657 + L1MA5 LINE L1 5754 6124 -176 1253 124 21 0 chr4 55478072 55478265 -146850082 + L1MA5 LINE L1 6102 6298 -2 233 232 71 0 chr4 55478282 55478338 -146850009 - MLT1H1 LTR MaLR -452 103 44 456 240 118 34 chr4 55479028 55479232 -146849115 + L1MC4 LINE L1 6796 7016 -1026 366 61 0 0 chr4 55479394 55479443 -146848904 + (CA)n Simple_repeat Simple_repeat 2 50 0 300 297 134 66 chr4 55481495 55481845 -146846502 - L2 LINE L2 -1 3312 2939 941 120 27 60 chr4 55481866 55482040 -146846307 + LTR36 LTR ERV1 1 170 -441 446 72 159 0 chr4 55482040 55482109 -146846238 - MADE1 DNA Mariner 0 80 1 655 178 8 42 chr4 55483591 55483709 -146844638 - AluJo SINE Alu -178 134 21 189 175 88 70 chr4 55484079 55484136 -146844211 + L2 LINE L2 3195 3252 -20 2643 222 60 18 chr4 55485584 55486152 -146842195 + MLT1E LTR MaLR 1 592 -1 292 283 143 70 chr4 55486186 55486600 -146841747 - L2 LINE L2 -1 3312 2869 694 227 76 15 chr4 55486733 55486931 -146841416 - MIR SINE MIR -50 212 3 274 248 158 30 chr4 55487124 55487225 -146841122 - L2 LINE L2 0 3313 3200 1201 211 57 7 chr4 55487225 55487505 -146840842 + MER33 DNA MER1_type 31 324 0 485 277 108 28 chr4 55488577 55488903 -146839444 + L1MC4a LINE L1 5657 6004 -117 2205 110 3 19 chr4 55489174 55489484 -146838863 - AluSx SINE Alu -5 307 3 424 217 211 12 chr4 55490311 55490477 -146837870 + Charlie8 DNA MER1_type 43 241 -2176 708 130 4 6 chr4 55490531 55490794 -146837553 + AluSx SINE Alu 1 310 -2 310 223 126 10 chr4 55491079 55491182 -146837165 + Charlie8 DNA MER1_type 435 549 -1868 5238 16 0 0 chr4 55491320 55491906 -146836441 + L1PA3 LINE L1 5583 6168 0 280 0 0 0 chr4 55491875 55491941 -146836406 + (TAA)n Simple_repeat Simple_repeat 3 68 0 356 221 168 20 chr4 55491986 55492135 -146836212 - MIR SINE MIR -44 218 48 1921 155 3 23 chr4 55492361 55492664 -146835683 - AluJo SINE Alu -15 297 1 395 249 131 40 chr4 55492831 55493060 -146835287 + MLT1I LTR MaLR 19 304 -245 22 0 0 0 chr4 55493154 55493176 -146835171 + AT_rich Low_complexity Low_complexity 1 22 0 975 264 97 10 chr4 55493734 55494269 -146834078 + L1MEc LINE L1 1493 2065 -4331 1726 267 57 12 chr4 55494305 55495301 -146833046 + L1MEc LINE L1 2936 3999 -2216 443 155 223 0 chr4 55495353 55495456 -146832891 + L1ME1 LINE L1 5699 5824 -342 3193 118 62 15 chr4 55495510 55496043 -146832304 - L1PA16 LINE L1 -11 6155 5598 734 209 20 70 chr4 55496043 55496287 -146832060 + L1ME1 LINE L1 5815 6046 -120 314 261 19 116 chr4 55496837 55497044 -146831303 - MIR SINE MIR -6 256 70 2176 129 0 7 chr4 55497081 55497383 -146830964 + AluSq SINE Alu 1 300 -13 2249 92 7 0 chr4 55499150 55499453 -146828894 + AluSp SINE Alu 1 305 -8 211 290 29 65 chr4 55499583 55499721 -146828626 - MIR SINE MIR -11 251 119 27 29 0 0 chr4 55501211 55501245 -146827102 + AT_rich Low_complexity Low_complexity 1 34 0 200 362 64 37 chr4 55503701 55503919 -146824428 + L2 LINE L2 2594 2817 -497 2187 99 7 0 chr4 55504070 55504353 -146823994 - AluSp SINE Alu -28 285 1 180 0 0 0 chr4 55504555 55504575 -146823772 + (TCTA)n Simple_repeat Simple_repeat 3 22 0 21 71 0 0 chr4 55505120 55505162 -146823185 + AT_rich Low_complexity Low_complexity 1 42 0 2311 77 0 24 chr4 55506555 55506852 -146821495 + AluSc SINE Alu 1 290 -19 28 48 0 0 chr4 55507149 55507191 -146821156 + AT_rich Low_complexity Low_complexity 1 42 0 804 242 76 0 chr4 55508269 55508480 -146819867 + MIR SINE MIR 36 262 0 2444 72 3 0 chr4 55509725 55510030 -146818317 + AluY SINE Alu 1 306 -5 1971 258 97 19 chr4 55510247 55511264 -146817083 - L2 LINE L2 -1 3312 2196 2453 82 0 0 chr4 55511423 55511729 -146816618 - AluSg SINE Alu -4 306 1 44 46 0 0 chr4 55512570 55512635 -146815712 + AT_rich Low_complexity Low_complexity 1 65 0 553 263 101 61 chr4 55512763 55513090 -146815257 - L1ME4a LINE L1 0 6121 5782 226 282 115 14 chr4 55513391 55513508 -146814839 - MIR SINE MIR -67 141 13 2424 38 7 0 chr4 55513527 55513816 -146814531 + AluY SINE Alu 1 291 -20 23 0 0 0 chr4 55514653 55514676 -146813671 + AT_rich Low_complexity Low_complexity 1 23 0 2640 251 110 80 chr4 55515193 55516502 -146811845 - HAL1 LINE L1 0 2507 1238 258 32 0 0 chr4 55516502 55516533 -146811814 + (CCTA)n Simple_repeat Simple_repeat 1 31 0 2640 251 110 80 chr4 55516533 55516563 -146811784 - HAL1 LINE L1 -1269 1238 1210 303 28 0 0 chr4 55516563 55516599 -146811748 + (TG)n Simple_repeat Simple_repeat 1 36 0 2640 251 110 80 chr4 55516599 55517447 -146810900 - HAL1 LINE L1 -1297 1210 254 274 105 0 0 chr4 55518295 55518333 -146810014 - tRNA-Lys-AAG tRNA tRNA -37 39 2 28 0 0 0 chr4 55519097 55519125 -146809222 + AT_rich Low_complexity Low_complexity 1 28 0 1868 162 30 3 chr4 55519131 55519199 -146809148 - MER2 DNA MER2_type 0 345 280 2512 61 0 10 chr4 55519199 55519509 -146808838 + AluSg1 SINE Alu 1 307 -2 1868 162 30 3 chr4 55519509 55519774 -146808573 - MER2 DNA MER2_type -65 280 3 481 246 197 20 chr4 55519869 55520072 -146808275 + Charlie1 DNA MER1_type 1 239 -2522 * 757 142 14 7 chr4 55520056 55520197 -146808150 + Charlie1 DNA MER1_type 2620 2761 0 565 326 116 61 chr4 55521086 55521847 -146806500 - L2 LINE L2 -16 3256 2454 502 193 114 0 chr4 55521852 55521966 -146806381 - MER45A DNA AcHobo -1 177 51 226 204 0 20 chr4 55522053 55522102 -146806245 - L2 LINE L2 -954 2360 2313 225 259 0 35 chr4 55522664 55522722 -146805625 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 423 266 113 100 chr4 55523013 55523209 -146805138 + L1M2 LINE L1 566 758 -6091 192 97 0 0 chr4 55523209 55523240 -146805107 + (CCCCG)n Simple_repeat Simple_repeat 2 32 0 423 266 113 100 chr4 55523240 55523675 -146804672 + L1M2 LINE L1 758 1380 -5469 265 324 122 75 chr4 55524535 55524813 -146803534 + L2 LINE L2 2934 3224 -48 290 278 119 16 chr4 55525168 55525294 -146803053 - MIR SINE MIR -115 147 9 343 245 21 0 chr4 55525427 55525521 -146802826 + MLT1C LTR MaLR 6 101 -366 517 171 0 38 chr4 55525521 55525618 -146802729 + MLT1A1 LTR MaLR 1 93 -281 548 214 30 0 chr4 55525618 55525749 -146802598 - MSTD LTR MaLR 0 396 262 518 200 9 0 chr4 55525804 55525914 -146802433 - MSTD LTR MaLR -283 113 3 1341 178 46 0 chr4 55525953 55526194 -146802153 + MLT1A1 LTR MaLR 114 365 0 841 223 165 6 chr4 55526194 55526489 -146801858 + MLT1C LTR MaLR 96 483 -22 228 306 82 10 chr4 55526489 55526587 -146801760 + L2 LINE L2 2322 2426 -888 266 198 109 79 chr4 55526621 55526722 -146801625 + L2 LINE L2 2686 2789 -525 232 366 45 18 chr4 55526936 55527048 -146801299 + L2 LINE L2 2945 3059 -213 2141 125 3 0 chr4 55529451 55529748 -146798599 + AluSp SINE Alu 1 298 -15 181 294 162 0 chr4 55529980 55530048 -146798299 - L2 LINE L2 -36 3236 3158 349 333 21 21 chr4 55530428 55530572 -146797775 - MIR3 SINE MIR -5 203 60 1878 148 30 14 chr4 55530754 55531051 -146797296 - AluSx SINE Alu -10 302 1 24 0 0 0 chr4 55531420 55531444 -146796903 + AT_rich Low_complexity Low_complexity 1 24 0 2227 116 48 20 chr4 55532149 55532503 -146795844 - THE1B LTR MaLR 0 364 1 9843 79 64 39 chr4 55532503 55532691 -146795656 - THE1B-int LTR MaLR 0 1580 1398 411 19 0 0 chr4 55532691 55532743 -146795604 + L1PA6 LINE L1 6102 6153 -1 9843 79 64 39 chr4 55532743 55532892 -146795455 - THE1B-int LTR MaLR -182 1398 1254 433 30 30 15 chr4 55532892 55532959 -146795388 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 1869 122 69 0 chr4 55532963 55533225 -146795122 - AluSx SINE Alu -32 280 1 9843 79 64 39 chr4 55533225 55534406 -146793941 - THE1B-int LTR MaLR -328 1252 18 1793 143 116 6 chr4 55534421 55534749 -146793598 - THE1B LTR MaLR 0 364 1 294 29 0 0 chr4 55535337 55535372 -146792975 + (TA)n Simple_repeat Simple_repeat 1 35 0 470 330 30 25 chr4 55537597 55537800 -146790547 + MIR3 SINE MIR 4 207 -1 189 229 145 90 chr4 55538519 55538685 -146789662 + L2 LINE L2 2220 2394 -920 1285 256 143 25 chr4 55538717 55539076 -146789271 + L2 LINE L2 2484 2909 -404 917 180 111 5 chr4 55539076 55539265 -146789082 + MER3 DNA MER1_type 1 209 0 1285 256 143 25 chr4 55539265 55539380 -146788967 + L2 LINE L2 2909 3009 -304 3179 165 80 15 chr4 55539380 55540047 -146788300 - MER49 LTR ERV1 -37 886 177 284 243 130 17 chr4 55540467 55540644 -146787703 + MER112 DNA MER1_type 29 225 -35 470 242 145 8 chr4 55540646 55540770 -146787577 + MER5B DNA MER1_type 3 143 -35 476 272 143 27 chr4 55541318 55541542 -146786805 + MIR SINE MIR 8 257 -5 192 286 59 42 chr4 55541545 55541664 -146786683 + L2 LINE L2 2295 2415 -899 200 286 52 68 chr4 55542104 55542296 -146786051 + L2 LINE L2 3125 3313 0 237 286 13 39 chr4 55542524 55542601 -146785746 - L2 LINE L2 -4 3268 3194 223 288 65 42 chr4 55542657 55542805 -146785542 - MIR3 SINE MIR -42 166 7 499 255 96 43 chr4 55542834 55543022 -146785325 - MIR SINE MIR -43 219 22 435 291 117 28 chr4 55543534 55543713 -146784634 + L2 LINE L2 2867 3061 -252 1060 211 24 36 chr4 55543781 55544032 -146784315 + MIR SINE MIR 2 249 -13 248 250 0 42 chr4 55544096 55544168 -146784179 - L2 LINE L2 -45 3268 3200 251 290 62 69 chr4 55544513 55544658 -146783689 + L2 LINE L2 2923 3066 -206 1152 189 73 16 chr4 55544959 55545334 -146783013 - MLT1J2 LTR MaLR -19 426 1 1032 17 17 0 chr4 55545685 55545803 -146782544 - L1PA4 LINE L1 0 6155 6036 1975 92 8 8 chr4 55546249 55546548 -146781799 + L1PA8 LINE L1 5894 6192 0 422 328 23 11 chr4 55546649 55546826 -146781521 + MIR SINE MIR 84 262 0 838 217 191 13 chr4 55546924 55547228 -146781119 - L1ME2 LINE L1 0 6164 5807 252 59 0 0 chr4 55547506 55547540 -146780807 + (GA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr4 55548168 55548190 -146780157 + AT_rich Low_complexity Low_complexity 1 22 0 239 248 211 8 chr4 55548284 55548417 -146779930 - L1ME4a LINE L1 -2 6119 5960 331 226 167 30 chr4 55549070 55549203 -146779144 - L1MD3 LINE L1 0 8042 7891 189 0 0 0 chr4 55549203 55549224 -146779123 + (TA)n Simple_repeat Simple_repeat 2 22 0 331 226 167 30 chr4 55549224 55549259 -146779088 - L1MD3 LINE L1 -151 7891 7862 6337 119 16 23 chr4 55549297 55550599 -146777748 - L1PB2 LINE L1 0 6151 4869 335 365 25 25 chr4 55550920 55551162 -146777185 + L2 LINE L2 2471 2715 -599 2462 85 0 0 chr4 55551162 55551469 -146776878 - AluY SINE Alu -4 307 1 335 365 25 25 chr4 55551469 55551511 -146776836 + L2 LINE L2 2714 2755 -559 4956 86 16 0 chr4 55551527 55552154 -146776193 - L1PA10 LINE L1 -11 6157 5521 4492 90 7 0 chr4 55552254 55552855 -146775492 - L1PA10 LINE L1 -287 5881 5277 573 286 36 99 chr4 55552860 55553410 -146774937 + L2 LINE L2 2751 3311 -2 281 296 83 0 chr4 55553794 55553902 -146774445 - L2 LINE L2 0 3313 3197 1854 171 0 17 chr4 55554348 55554646 -146773701 - AluJo SINE Alu -19 293 1 201 140 20 60 chr4 55555413 55555463 -146772884 - L3 LINE CR1 -579 998 951 36 0 0 0 chr4 55555502 55555538 -146772809 + AT_rich Low_complexity Low_complexity 1 36 0 277 295 162 21 chr4 55555706 55555947 -146772400 - L1ME4a LINE L1 -217 5904 5630 1732 37 0 0 chr4 55555982 55556172 -146772175 + L1PA3 LINE L1 5963 6152 -3 239 241 0 35 chr4 55557322 55557380 -146770967 + C-rich Low_complexity Low_complexity 2 57 0 2252 109 0 10 chr4 55557879 55558183 -146770164 - AluSx SINE Alu -11 301 1 301 203 17 0 chr4 55558667 55558726 -146769621 - MER63 DNA MER1_type -331 729 670 991 157 51 51 chr4 55558992 55559209 -146769138 + AluJo SINE Alu 27 243 -69 4202 91 21 31 chr4 55559209 55559816 -146768531 - MER84-int LTR ERV1 -436 4518 3918 11223 129 25 10 chr4 55560353 55562025 -146766322 - MER84-int LTR ERV1 -2543 2411 715 1218 126 6 6 chr4 55562025 55562208 -146766139 - MER84 LTR ERVI -324 183 1 550 202 4 24 chr4 55562672 55562920 -146765427 + CT-rich Low_complexity Low_complexity 1 243 0 24 53 0 0 chr4 55562971 55563009 -146765338 + AT_rich Low_complexity Low_complexity 1 38 0 572 211 115 96 chr4 55563469 55563677 -146764670 + MER58C DNA MER1_type 4 215 0 211 255 0 0 chr4 55563763 55563810 -146764537 + L2 LINE L2 3262 3308 -5 839 308 8 0 chr4 55564611 55564864 -146763483 + MIR SINE MIR 6 260 -2 562 297 22 16 chr4 55565713 55565895 -146762452 + MER5A DNA MER1_type 7 189 0 863 298 38 8 chr4 55566072 55566310 -146762037 + MIR SINE MIR 8 252 -10 1523 306 155 19 chr4 55566809 55567725 -146760622 - L3 LINE CR1 -254 1323 283 22 0 0 0 chr4 55568253 55568275 -146760072 + AT_rich Low_complexity Low_complexity 1 22 0 1701 164 25 0 chr4 55568945 55569219 -146759128 + AluJo SINE Alu 1 281 -31 408 53 18 0 chr4 55569219 55569276 -146759071 - Alu SINE Alu -13 297 240 568 273 93 6 chr4 55569628 55569789 -146758558 + MIR SINE MIR 69 243 -19 26 30 0 0 chr4 55570119 55570152 -146758195 + AT_rich Low_complexity Low_complexity 1 33 0 213 178 0 0 chr4 55570268 55570313 -146758034 + (TA)n Simple_repeat Simple_repeat 1 45 0 1164 274 95 14 chr4 55570403 55570962 -146757385 - L1MC4a LINE L1 -1890 5918 5315 1228 195 27 38 chr4 55571021 55571414 -146756933 + AluJb SINE Alu 51 440 0 26 0 0 0 chr4 55571535 55571561 -146756786 + AT_rich Low_complexity Low_complexity 1 26 0 30889 115 19 59 chr4 55572870 55579282 -146749065 - L1PA7 LINE L1 -2 6152 12 431 263 38 38 chr4 55579494 55579680 -146748667 - MIR3 SINE MIR -4 204 19 4442 143 68 21 chr4 55579781 55580527 -146747820 + LTR39 LTR ERV1 1 781 -2 408 20 0 0 chr4 55580570 55580619 -146747728 + (CA)n Simple_repeat Simple_repeat 2 50 0 1987 160 0 0 chr4 55580998 55581291 -146747056 + AluJb SINE Alu 1 293 -19 646 240 16 0 chr4 55581797 55581918 -146746429 + AluJo SINE Alu 45 167 -145 2085 124 14 0 chr4 55582747 55583038 -146745309 + AluSg SINE Alu 1 295 -15 1404 173 8 8 chr4 55583044 55583304 -146745043 + L1MB5 LINE L1 5664 5923 -251 6436 115 26 32 chr4 55583304 55584006 -146744341 - Tigger3b DNA MER2_type -1797 1231 536 1890 132 49 3 chr4 55584006 55584293 -146744054 + AluSx SINE Alu 1 300 -12 6436 115 26 32 chr4 55584293 55584663 -146743684 - Tigger3b DNA MER2_type -2492 536 165 1107 167 43 5 chr4 55584763 55584949 -146743398 - Tigger3b DNA MER2_type -1029 202 10 869 171 56 64 chr4 55584951 55585234 -146743113 + L1MB5 LINE L1 5921 6180 0 1936 102 0 0 chr4 55586861 55587105 -146741242 - AluSg SINE Alu -66 244 1 455 236 0 47 chr4 55587547 55587674 -146740673 - L2 LINE L2 0 3313 3193 787 194 0 8 chr4 55588648 55588782 -146739565 + AluJb SINE Alu 2 134 -178 1087 150 0 17 chr4 55588823 55588996 -146739351 + AluJb SINE Alu 131 300 -12 23 0 0 0 chr4 55589130 55589153 -146739194 + AT_rich Low_complexity Low_complexity 1 23 0 32575 110 10 22 chr4 55589331 55595730 -146732617 - L1PA7 LINE L1 -4 6465 10 2028 123 21 0 chr4 55595893 55596219 -146732128 + L1PA13 LINE L1 5824 6156 -7 22 0 0 0 chr4 55597317 55597339 -146731008 + AT_rich Low_complexity Low_complexity 1 22 0 389 285 36 6 chr4 55599339 55599449 -146728898 + MIR3 SINE MIR 44 154 -54 1454 204 100 25 chr4 55599464 55599935 -146728412 - MER20B DNA MER1_type -7 776 271 1877 121 66 38 chr4 55600399 55600764 -146727583 - THE1C LTR MaLR 0 375 1 268 313 36 0 chr4 55601137 55601220 -146727127 - L2 LINE L2 0 3272 3187 386 198 11 66 chr4 55602486 55602577 -146725770 - L2 LINE L2 0 3272 3187 449 294 9 25 chr4 55603718 55603925 -146724422 - MIR SINE MIR -2 260 6 349 259 161 7 chr4 55603956 55604099 -146724248 + MER103 DNA DNA 1 165 -1 2363 113 26 31 chr4 55604584 55605001 -146723346 + L1MA4A LINE L1 5881 6295 -8 236 267 167 44 chr4 55605315 55605405 -146722942 + MER5A DNA MER1_type 43 143 -46 279 179 0 0 chr4 55606851 55606918 -146721429 + A-rich Low_complexity Low_complexity 1 67 0 33 25 0 0 chr4 55607372 55607412 -146720935 + AT_rich Low_complexity Low_complexity 1 40 0 216 0 0 0 chr4 55607692 55607716 -146720631 + (CA)n Simple_repeat Simple_repeat 1 24 0 295 382 0 0 chr4 55608517 55608640 -146719707 + MIR SINE MIR 21 143 -119 2637 132 11 25 chr4 55611068 55611508 -146716839 + Tigger2a DNA MER2_type 1 434 0 2270 129 3 0 chr4 55612139 55612448 -146715899 - AluSq SINE Alu -3 310 1 401 238 38 124 chr4 55612883 55613027 -146715320 - MER102a DNA MER1_type -1100 317 195 1863 157 29 37 chr4 55613027 55613404 -146714943 + MLT1A2 LTR MaLR 1 374 0 401 238 38 124 chr4 55613404 55613469 -146714878 - MER102a DNA MER1_type -1222 195 126 496 228 65 99 chr4 55613554 55613703 -146714644 + MIR SINE MIR 10 150 -112 340 20 0 39 chr4 55613703 55613754 -146714593 + (TA)n Simple_repeat Simple_repeat 2 50 0 496 228 65 99 chr4 55613754 55613836 -146714511 + MIR SINE MIR 150 233 -29 1835 168 19 16 chr4 55613843 55614218 -146714129 + L1MC2 LINE L1 5877 6252 -92 1059 231 98 89 chr4 55614266 55614808 -146713539 - MLT1H LTR MaLR 0 549 3 399 215 70 38 chr4 55616066 55616224 -146712123 - MER103 DNA DNA -1 165 3 1889 181 7 0 chr4 55617405 55617715 -146710632 - AluJb SINE Alu 0 312 1 22 0 0 0 chr4 55618254 55618276 -146710071 + AT_rich Low_complexity Low_complexity 1 22 0 1966 159 0 25 chr4 55618708 55619028 -146709319 - AluJb SINE Alu 0 312 1 21 36 0 0 chr4 55619049 55619077 -146709270 + AT_rich Low_complexity Low_complexity 1 28 0 799 152 0 20 chr4 55619082 55619233 -146709114 - L1PA13 LINE L1 -5 6158 6011 697 285 34 10 chr4 55620159 55620366 -146707981 + MIR SINE MIR 1 212 -50 669 212 91 12 chr4 55620445 55620610 -146707737 - MER45A DNA AcHobo 0 178 1 1142 183 15 0 chr4 55620724 55620926 -146707421 + AluJb SINE Alu 1 205 -107 198 0 0 0 chr4 55620942 55620964 -146707383 + (A)n Simple_repeat Simple_repeat 1 22 0 29192 57 5 0 chr4 55622066 55625944 -146702403 - L1P LINE L1 -2242 3904 7 2794 243 27 25 chr4 55625977 55626315 -146702032 - L1M4 LINE L1 -1923 4223 3887 1964 141 10 20 chr4 55626315 55626619 -146701728 - AluSx SINE Alu -11 301 1 2794 243 27 25 chr4 55626619 55627274 -146701073 - L1M4 LINE L1 -2259 3887 3228 2657 235 18 13 chr4 55627306 55627992 -146700355 - L1MEc LINE L1 -5673 723 35 228 221 118 0 chr4 55628012 55628080 -146700267 - MIR SINE MIR -8 254 179 546 323 7 19 chr4 55628140 55628295 -146700052 - MIR SINE MIR -102 160 8 1578 136 0 85 chr4 55628526 55628847 -146699500 - AluSx SINE Alu 0 309 14 251 160 0 20 chr4 55630264 55630314 -146698033 - LTR67 LTR ERVL -16 541 493 370 265 114 48 chr4 55630416 55630582 -146697765 - MER115 DNA AcHobo -516 177 1 236 333 19 28 chr4 55631218 55631326 -146697021 + MLT1K LTR MaLR 111 217 -371 207 156 22 44 chr4 55631702 55631747 -146696600 + MIR SINE MIR 107 150 -112 204 344 10 31 chr4 55631894 55631990 -146696357 + L2 LINE L2 3173 3266 -6 1061 267 108 50 chr4 55633696 55633739 -146694608 + MLT1J LTR MaLR 1 40 -471 1920 124 71 0 chr4 55633739 55634022 -146694325 - AluSx SINE Alu -7 305 3 1061 267 108 50 chr4 55634022 55634461 -146693886 + MLT1J LTR MaLR 40 511 0 348 305 50 21 chr4 55634475 55634616 -146693731 - L1M4 LINE L1 -1519 4627 4483 236 280 0 86 chr4 55635166 55635259 -146693088 + MIR SINE MIR 78 162 -100 2443 163 55 0 chr4 55635348 55635752 -146692595 + MSTB LTR MaLR 1 426 0 1622 130 3 27 chr4 55635752 55636044 -146692303 + MSTB-int LTR MaLR 1 285 -1366 274 239 235 42 chr4 55636053 55636411 -146691936 - MLT1K LTR MaLR -17 571 183 1543 275 24 2 chr4 55636587 55637009 -146691338 + LTR16C LTR ERVL 58 488 -3 23 33 0 0 chr4 55637475 55637505 -146690842 + AT_rich Low_complexity Low_complexity 1 30 0 28 79 0 0 chr4 55638373 55638436 -146689911 + AT_rich Low_complexity Low_complexity 1 63 0 5866 111 2 16 chr4 55639345 55640413 -146687934 + L1PA13 LINE L1 5106 6160 -3 3046 189 23 40 chr4 55640762 55640834 -146687513 + L1MB3 LINE L1 4572 4644 -1536 2526 48 3 0 chr4 55640834 55641181 -146687166 + L1PA5 LINE L1 5825 6173 0 3046 189 23 40 chr4 55641181 55641860 -146686487 + L1MB3 LINE L1 4644 5318 -862 2153 97 42 0 chr4 55641860 55642149 -146686198 + AluY SINE Alu 1 301 -10 3046 189 23 40 chr4 55642149 55642304 -146686043 + L1MB3 LINE L1 5318 5474 -706 5578 112 27 3 chr4 55642313 55644059 -146684288 + L1PA13 LINE L1 4382 6159 -4 3397 163 26 40 chr4 55644094 55644428 -146683919 + L1MB3 LINE L1 5479 5816 -367 850 165 0 0 chr4 55644428 55644561 -146683786 + FLAM_A SINE Alu 1 133 0 3397 163 26 40 chr4 55644561 55644930 -146683417 + L1MB3 LINE L1 5816 6172 -11 1634 84 23 27 chr4 55645190 55645238 -146683109 - L1MA2 LINE L1 0 6304 6257 2523 125 18 10 chr4 55645238 55645638 -146682709 - MER57A LTR ERV1 0 403 1 1634 84 23 27 chr4 55645638 55645852 -146682495 - L1MA2 LINE L1 -47 6257 6043 443 317 35 0 chr4 55646821 55646966 -146681381 + AluJb SINE Alu 141 290 -22 388 167 104 0 chr4 55647866 55647962 -146680385 + L1MA4A LINE L1 6015 6120 -183 493 131 10 40 chr4 55647963 55648062 -146680285 + L1MA4A LINE L1 6183 6278 -25 24 0 0 0 chr4 55648068 55648092 -146680255 + AT_rich Low_complexity Low_complexity 1 24 0 307 262 20 27 chr4 55648351 55648500 -146679847 + L1PA14 LINE L1 5969 6116 -45 4978 91 6 38 chr4 55648718 55649514 -146678833 + LTR17 LTR ERV1 10 780 0 1823 106 43 0 chr4 55649514 55649796 -146678551 + MER4-int LTR ERV1 707 1000 -4015 2723 112 201 1 chr4 55649896 55650164 -146678183 + MER4-int LTR ERV1 32 245 -6353 183 42 0 0 chr4 55650164 55650188 -146678159 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2723 112 201 1 chr4 55650188 55650560 -146677787 + MER4-int LTR ERV1 245 831 -5767 504 199 50 50 chr4 55650657 55650838 -146677509 + MER4-int LTR ERV1 852 1032 -5566 518 227 55 14 chr4 55650854 55651074 -146677273 + MER4E LTR ERV1 22 250 -529 6221 145 9 36 chr4 55651337 55652709 -146675638 + L1P3 LINE L1 1058 2415 -4046 960 195 71 3 chr4 55652885 55653167 -146675180 + Charlie4a DNA MER1_type 149 449 -59 5060 86 5 14 chr4 55653167 55653939 -146674408 + L1P LINE L1 13 777 -5369 905 78 78 0 chr4 55655011 55655139 -146673208 + MER85 DNA T2_type 2 139 0 6302 44 3 3 chr4 55655582 55656746 -146671601 + L1PA2 LINE L1 4838 6000 -155 541 326 22 11 chr4 55657155 55657333 -146671014 + L2 LINE L2 2683 2862 -452 198 147 0 0 chr4 55657454 55657488 -146670859 + L2 LINE L2 3035 3068 -245 1841 150 29 0 chr4 55657671 55657951 -146670396 + AluSx SINE Alu 11 298 -14 371 292 76 60 chr4 55657997 55658182 -146670165 + L2 LINE L2 2959 3146 -167 10264 36 4 0 chr4 55658679 55660134 -146668213 + L1P2 LINE L1 4089 5547 -607 813 218 73 17 chr4 55660236 55660415 -146667932 + MIR SINE MIR 64 252 -10 880 240 122 43 chr4 55660869 55661358 -146666989 + LTR24B LTR ERV1 1 515 -61 700 183 16 0 chr4 55661753 55661879 -146666468 + AluJb SINE Alu 180 307 -5 258 299 0 13 chr4 55661879 55661956 -146666391 + Charlie4a DNA MER1_type 432 507 -1 785 181 34 0 chr4 55662447 55662596 -146665751 + MER20 DNA MER1_type 59 212 -7 407 296 50 0 chr4 55662763 55662922 -146665425 - MLT1K LTR MaLR -285 303 137 188 333 14 14 chr4 55664837 55664909 -146663438 - L3 LINE CR1 -160 1417 1346 258 32 0 0 chr4 55665013 55665044 -146663303 + (TG)n Simple_repeat Simple_repeat 2 32 0 217 333 19 9 chr4 55665158 55665263 -146663084 - L3 LINE CR1 -228 1349 1244 818 260 45 16 chr4 55665570 55665812 -146662535 + MIR SINE MIR 14 262 0 1137 209 20 0 chr4 55666091 55666345 -146662002 - L1 LINE L1 -3573 2573 2315 38972 67 6 4 chr4 55666468 55672614 -146655733 - L1PA5 LINE L1 -2 6152 2 304 138 46 0 chr4 55672616 55672681 -146655666 - L1 LINE L1 -3821 2325 2258 797 186 0 0 chr4 55672696 55672825 -146655522 - FLAM_C SINE Alu -3 130 2 385 334 70 83 chr4 55674665 55674967 -146653380 + L2 LINE L2 2974 3271 -1 461 256 188 0 chr4 55675067 55675200 -146653147 - MIR3 SINE MIR -21 187 30 404 168 92 50 chr4 55675783 55675902 -146652445 + Charlie8 DNA MER1_type 39 162 -2255 783 205 83 10 chr4 55675922 55676127 -146652220 - MLT1C LTR MaLR -3 464 245 27 29 0 0 chr4 55676311 55676345 -146652002 + AT_rich Low_complexity Low_complexity 1 34 0 24 67 0 0 chr4 55676535 55676580 -146651767 + AT_rich Low_complexity Low_complexity 1 45 0 2486 144 30 21 chr4 55676879 55677309 -146651038 - Tigger2a DNA MER2_type 0 434 1 26 50 0 0 chr4 55677474 55677514 -146650833 + AT_rich Low_complexity Low_complexity 1 40 0 24 53 0 0 chr4 55677528 55677566 -146650781 + AT_rich Low_complexity Low_complexity 1 38 0 948 203 88 98 chr4 55677791 55678191 -146650156 - MSTD LTR MaLR 0 396 1 232 309 97 0 chr4 55678334 55678437 -146649910 - MIR SINE MIR -95 113 54 313 333 31 0 chr4 55678542 55678638 -146649709 - MIR SINE MIR -134 128 30 6670 208 42 22 chr4 55678681 55680547 -146647800 + L1MB7 LINE L1 16 1918 -4728 9178 171 59 32 chr4 55680547 55681910 -146646437 + L1MC3 LINE L1 5556 6998 -787 2039 128 57 23 chr4 55681910 55682262 -146646085 + THE1B LTR MaLR 1 364 0 9178 171 59 32 chr4 55682262 55683050 -146645297 + L1MC3 LINE L1 6998 7764 -21 965 265 36 63 chr4 55683094 55683792 -146644555 + L1MB7 LINE L1 2069 2707 -3939 447 196 0 0 chr4 55683789 55683881 -146644466 + L1MB7 LINE L1 5422 5513 -1131 * 3908 170 54 25 chr4 55683885 55684098 -146644249 + L1MB7 LINE L1 5554 5759 -923 222 37 0 0 chr4 55684098 55684125 -146644222 + (CAA)n Simple_repeat Simple_repeat 1 27 0 3908 170 54 25 chr4 55684125 55684861 -146643486 + L1MB7 LINE L1 5759 6548 -134 2172 115 0 0 chr4 55684861 55685156 -146643191 - AluSg SINE Alu -15 295 1 3908 170 54 25 chr4 55685156 55685225 -146643122 + L1MB7 LINE L1 6548 6613 -69 496 137 0 150 chr4 55685221 55685293 -146643054 + L1MB7 LINE L1 6545 6584 -98 * 1606 195 7 23 chr4 55685293 55685596 -146642751 + AluJb SINE Alu 1 298 -14 496 137 0 150 chr4 55685596 55685676 -146642671 + L1MB7 LINE L1 6584 6674 -8 23 0 0 0 chr4 55686339 55686362 -146641985 + AT_rich Low_complexity Low_complexity 1 23 0 313 324 20 24 chr4 55687318 55687481 -146640866 - MIR SINE MIR -62 146 34 704 220 17 57 chr4 55687506 55687683 -146640664 + MER5B DNA MER1_type 6 175 -3 346 244 77 0 chr4 55687783 55687861 -146640486 - L2 LINE L2 -5 3308 3225 804 303 72 42 chr4 55688212 55688687 -146639660 - LTR33 LTR ERVL 0 521 33 308 274 71 9 chr4 55689213 55689326 -146639021 - L1ME4a LINE L1 -24 6097 5978 651 302 153 0 chr4 55689390 55689592 -146638755 - MIR SINE MIR -8 254 22 1842 95 8 0 chr4 55689773 55690037 -146638310 - L1PA15 LINE L1 -1 6164 5899 251 333 0 0 chr4 55690248 55690308 -146638039 - L2 LINE L2 -25 3247 3188 832 176 44 6 chr4 55690738 55690920 -146637427 - MER5A DNA MER1_type 0 189 1 468 272 119 8 chr4 55691314 55691557 -146636790 - L1ME4a LINE L1 -249 5872 5603 27 0 0 0 chr4 55692413 55692440 -146635907 + AT_rich Low_complexity Low_complexity 1 27 0 23 78 0 0 chr4 55693172 55693223 -146635124 + AT_rich Low_complexity Low_complexity 1 51 0 622 265 64 56 chr4 55694508 55694757 -146633590 - MIR SINE MIR 0 262 12 2215 124 0 3 chr4 55694951 55695257 -146633090 - AluSx SINE Alu -7 305 1 1522 178 40 27 chr4 55695984 55696282 -146632065 - AluJo SINE Alu -10 302 1 277 307 135 57 chr4 55696282 55696757 -146631590 + L2 LINE L2 2164 2675 -639 483 294 87 11 chr4 55697071 55697255 -146631092 - MIR SINE MIR -50 212 15 579 310 69 80 chr4 55697825 55698202 -146630145 - L2 LINE L2 0 3272 2900 805 254 48 65 chr4 55698432 55698723 -146629624 + MLT1J LTR MaLR 226 511 0 634 238 108 54 chr4 55698800 55698901 -146629446 + MIR SINE MIR 10 104 -158 717 194 0 16 chr4 55698901 55699030 -146629317 - FLAM_A SINE Alu -6 127 1 634 238 108 54 chr4 55699030 55699168 -146629179 + MIR SINE MIR 104 262 0 216 0 0 0 chr4 55699833 55699857 -146628490 + (TG)n Simple_repeat Simple_repeat 1 24 0 2122 198 44 35 chr4 55699859 55700338 -146628009 + MER74A LTR ERVL 3 485 -73 1601 164 4 18 chr4 55700341 55700621 -146627726 + AluJb SINE Alu 1 276 -36 23 0 0 0 chr4 55700625 55700648 -146627699 + AT_rich Low_complexity Low_complexity 1 23 0 252 22 67 0 chr4 55700755 55700800 -146627547 + (TG)n Simple_repeat Simple_repeat 2 49 0 1200 188 0 27 chr4 55701078 55701302 -146627045 - AluJo SINE Alu -94 218 1 1727 111 25 0 chr4 55701700 55701943 -146626404 - AluSx SINE Alu -6 306 58 273 170 21 0 chr4 55702204 55702251 -146626096 + Alu SINE Alu 1 48 -254 1807 196 72 47 chr4 55702373 55702858 -146625489 + MLT1D LTR MaLR 1 497 -8 299 214 26 8 chr4 55704701 55704818 -146623529 + CT-rich Low_complexity Low_complexity 2 120 0 758 221 19 0 chr4 55704917 55705071 -146623276 - MER5B DNA MER1_type -21 157 1 885 162 92 49 chr4 55705934 55706119 -146622228 - MER20 DNA MER1_type 0 219 27 588 252 68 160 chr4 55706401 55706956 -146621391 + MLT1K LTR MaLR 75 578 -10 1793 148 0 47 chr4 55706962 55707284 -146621063 + AluJb SINE Alu 1 308 0 5446 144 9 0 chr4 55707284 55708144 -146620203 - L1P LINE L1 -1521 4625 3758 467 133 27 0 chr4 55708145 55708220 -146620127 + L1P LINE L1 5302 5378 -788 * 3166 125 7 0 chr4 55708209 55708710 -146619637 + L1PA8 LINE L1 2 652 -5809 8724 150 26 37 chr4 55708714 55710401 -146617946 + L1PA8 LINE L1 989 2694 -3767 5172 162 24 30 chr4 55710390 55710878 -146617469 + L1PA8 LINE L1 4502 4991 -1496 * 1076 142 13 0 chr4 55710878 55711033 -146617314 + AluSg/x SINE Alu 141 297 -15 5172 162 24 30 chr4 55711033 55712499 -146615848 + L1PA8 LINE L1 4991 6487 0 449 337 123 24 chr4 55712572 55712955 -146615392 - L3 LINE CR1 -2 1575 1155 197 276 48 57 chr4 55712965 55713070 -146615277 + MIR SINE MIR 26 129 -133 31948 74 3 15 chr4 55713077 55718173 -146610174 - L1PA5 LINE L1 -1 6153 1121 44025 49 1 1 chr4 55718211 55724360 -146603987 - L1PA3 LINE L1 -3 6152 9 3189 100 88 0 chr4 55724373 55724841 -146603506 - L1PA5 LINE L1 -5015 1131 623 674 111 0 30 chr4 55724839 55724938 -146603409 - L1PA5 LINE L1 -6048 98 3 * 283 280 70 10 chr4 55725093 55725193 -146603154 - L3 LINE CR1 -420 1157 1052 351 273 84 42 chr4 55725899 55726042 -146602305 - MIR SINE MIR -108 154 6 211 305 8 51 chr4 55726526 55726644 -146601703 + GA-rich Low_complexity Low_complexity 2 114 0 202 410 0 0 chr4 55727286 55727364 -146600983 + L2 LINE L2 2996 3073 -199 398 280 9 19 chr4 55727534 55727641 -146600706 + L2 LINE L2 3203 3308 -5 772 208 193 5 chr4 55729853 55730050 -146598297 + MIR SINE MIR 24 257 -5 592 203 54 27 chr4 55730810 55730958 -146597389 - MIR SINE MIR 0 262 111 403 248 60 154 chr4 55730968 55731415 -146596932 - LTR16A1 LTR ERVL -1 456 52 649 286 117 49 chr4 55731714 55732022 -146596325 + MER102a DNA MER1_type 1 329 -1 1000 205 22 0 chr4 55734251 55734436 -146593911 - MER5A DNA MER1_type 0 189 1 260 282 55 74 chr4 55734436 55734638 -146593709 - L2 LINE L2 -514 2800 2603 2282 119 7 0 chr4 55734764 55735074 -146593273 + AluSx SINE Alu 1 312 0 353 248 126 72 chr4 55736153 55736431 -146591916 - MLT1K LTR MaLR -110 478 186 1526 141 33 22 chr4 55736565 55736835 -146591512 - MER58B DNA MER1_type -3 338 66 4312 152 23 4 chr4 55736905 55737603 -146590744 - MER50 LTR ERV1 -23 711 1 230 133 44 22 chr4 55737607 55737652 -146590695 + MLT1L LTR MaLR 230 275 -340 401 169 0 0 chr4 55737673 55737732 -146590615 + AluJ/FLAM SINE Alu 2 60 -252 545 267 53 23 chr4 55737740 55738006 -146590341 + MLT1L LTR MaLR 316 589 -26 221 271 21 0 chr4 55739449 55739497 -146588850 + MER91 DNA MER1_type 137 185 -5 247 197 49 49 chr4 55740388 55740449 -146587898 - AluYb8 SINE Alu -12 296 236 432 228 61 122 chr4 55740530 55740727 -146587620 - L1MC5 LINE L1 -730 7231 7047 315 50 0 0 chr4 55740727 55740767 -146587580 + MER4E LTR ERV1 1 40 -726 2850 158 94 2 chr4 55740771 55741279 -146587068 + MER4D LTR ERV1 349 903 0 5266 118 27 18 chr4 55741409 55742181 -146586166 + MER4E LTR ERV1 1 779 0 220 342 0 0 chr4 55743403 55743479 -146584868 - L2 LINE L2 -1 3312 3237 2009 190 232 48 chr4 55743702 55743888 -146584459 + L1MB2 LINE L1 3431 3581 -2565 842 172 0 15 chr4 55743888 55744022 -146584325 + FLAM_C SINE Alu 2 133 0 2009 190 232 48 chr4 55744022 55744482 -146583865 + L1MB2 LINE L1 3581 4196 -1950 1975 163 16 28 chr4 55744509 55744646 -146583701 + L1MB2 LINE L1 5053 5190 -981 3472 133 8 6 chr4 55744646 55745159 -146583188 + MER75 DNA T2_type 1 514 0 1975 163 16 28 chr4 55745159 55745589 -146582758 + L1MB2 LINE L1 5190 5614 -557 1565 129 4 0 chr4 55745611 55745844 -146582503 + L1PA14 LINE L1 5 238 -7343 * 10257 123 25 43 chr4 55745835 55746770 -146581577 + L1PA14 LINE L1 1500 2450 -5134 420 95 0 0 chr4 55746770 55746833 -146581514 + AluSp/q SINE Alu 239 301 -12 261 0 0 0 chr4 55746833 55746862 -146581485 + (TA)n Simple_repeat Simple_repeat 2 30 0 10257 123 25 43 chr4 55746862 55747549 -146580798 + L1PA14 LINE L1 2448 3159 -4425 15789 30 2 1 chr4 55747555 55749539 -146578808 - L1PA3 LINE L1 -743 5403 3417 6139 30 0 9 chr4 55749540 55750273 -146578074 + L1PA3 LINE L1 5430 6155 0 17401 172 13 7 chr4 55750273 55754704 -146573643 + L1PA14 LINE L1 3145 7596 -3 1242 197 48 3 chr4 55754696 55754991 -146573356 + L1MB2 LINE L1 5591 5898 -273 * 389 171 0 14 chr4 55754991 55755061 -146573286 + Tigger2 DNA MER2_type 1 69 -2649 * 1103 152 57 5 chr4 55755051 55755261 -146573086 + Tigger2 DNA MER2_type 2273 2493 -225 21 0 0 0 chr4 55755265 55755286 -146573061 + AT_rich Low_complexity Low_complexity 1 21 0 4504 137 45 11 chr4 55755286 55756101 -146572246 - L1PA15 LINE L1 -3 6162 5320 5847 136 13 6 chr4 55756110 55757598 -146570749 - L1PB2 LINE L1 -6 6145 4647 1034 151 141 0 chr4 55757598 55757804 -146570543 + Tigger2 DNA MER2_type 2484 2718 0 1187 175 43 4 chr4 55757804 55758061 -146570286 + L1MB2 LINE L1 5905 6171 0 203 234 21 0 chr4 55758096 55758143 -146570204 + (TA)n Simple_repeat Simple_repeat 2 49 0 607 190 14 0 chr4 55758588 55758730 -146569617 - MER103 DNA DNA -12 154 11 1940 150 24 0 chr4 55758812 55759105 -146569242 + AluSx SINE Alu 1 300 -12 21 57 0 0 chr4 55759105 55759140 -146569207 + AT_rich Low_complexity Low_complexity 1 35 0 468 271 84 20 chr4 55759740 55759920 -146568427 - MIR3 SINE MIR -50 158 20 424 232 171 11 chr4 55759969 55760150 -146568197 + L1ME4a LINE L1 5618 5827 -294 314 229 61 38 chr4 55760239 55760370 -146567977 + L1ME4a LINE L1 5982 6115 -6 32 26 0 0 chr4 55760380 55760419 -146567928 + AT_rich Low_complexity Low_complexity 1 39 0 764 178 25 89 chr4 55761022 55761224 -146567123 - MER5A DNA MER1_type 0 189 1 1573 181 33 25 chr4 55763461 55763821 -146564526 - MLT1A1 LTR MaLR -2 363 1 1193 155 76 66 chr4 55764161 55764478 -146563869 - MER33 DNA MER1_type -4 320 1 257 215 0 15 chr4 55764764 55764829 -146563518 - MER5A DNA MER1_type -116 73 10 489 288 41 18 chr4 55764888 55765058 -146563289 + MIR SINE MIR 2 175 -87 223 273 55 0 chr4 55765184 55765239 -146563108 + L2 LINE L2 3017 3074 -198 6495 129 84 7 chr4 55765241 55766384 -146561963 - Tigger3b DNA MER2_type 0 1231 1 2147 170 3 6 chr4 55766446 55766811 -146561536 - MLT1A1 LTR MaLR -1 364 1 468 311 24 24 chr4 55766926 55767090 -146561257 - MER5B DNA MER1_type -14 164 1 245 286 26 13 chr4 55767092 55767169 -146561178 + L2 LINE L2 3190 3267 -5 3262 242 93 31 chr4 55767239 55768394 -146559953 - MER69B DNA AcHobo 0 1226 1 733 226 79 11 chr4 55769147 55769324 -146559023 - MER5A DNA MER1_type 0 189 1 1032 115 5 91 chr4 55769512 55769720 -146558627 - MER20 DNA MER1_type -28 191 2 229 374 22 0 chr4 55770037 55770128 -146558219 - MIR SINE MIR -87 121 29 2198 106 0 0 chr4 55770316 55770621 -146557726 - AluSx SINE Alu 0 305 1 237 33 0 0 chr4 55770891 55770921 -146557426 + (TC)n Simple_repeat Simple_repeat 1 30 0 379 287 50 4 chr4 55772270 55772416 -146555931 + MIR SINE MIR 35 185 -68 335 316 45 76 chr4 55772543 55772834 -146555513 + HAL1 LINE L1 2225 2506 -1 692 263 71 55 chr4 55773310 55773565 -146554782 + MIR SINE MIR 4 262 0 1514 95 0 9 chr4 55773597 55773818 -146554529 - L1PA6 LINE L1 0 6154 5936 7161 23 0 0 chr4 55773844 55774716 -146553631 - L1PA3 LINE L1 0 6155 5284 4051 60 2 0 chr4 55774716 55775249 -146553098 - L1PA6 LINE L1 -218 5936 5403 2188 112 0 14 chr4 55776068 55776391 -146551956 + AluSc SINE Alu 1 319 0 22 35 0 0 chr4 55776458 55776487 -146551860 + AT_rich Low_complexity Low_complexity 1 29 0 244 229 0 0 chr4 55776826 55776874 -146551473 + MIR SINE MIR 82 129 -133 304 190 6 229 chr4 55776899 55777078 -146551269 - L2 LINE L2 0 3313 3175 214 314 43 0 chr4 55777131 55777201 -146551146 + L2 LINE L2 2992 3064 -249 260 382 15 35 chr4 55777253 55777452 -146550895 - L2 LINE L2 -302 3011 2817 25 0 0 0 chr4 55777476 55777501 -146550846 + AT_rich Low_complexity Low_complexity 1 25 0 754 248 9 9 chr4 55777605 55777819 -146550528 - MLT1F-int LTR MaLR -761 610 397 759 222 0 0 chr4 55777821 55777956 -146550391 + FRAM SINE Alu 1 131 -45 408 284 36 31 chr4 55778035 55778229 -146550118 - MLT1F-int LTR MaLR -1176 195 1 1554 293 47 6 chr4 55778231 55778723 -146549624 - MLT1F LTR MaLR -13 529 18 7321 179 23 8 chr4 55778724 55780433 -146547914 - L1PB4 LINE L1 -8 6148 4466 345 24 0 0 chr4 55780433 55780475 -146547872 + (TG)n Simple_repeat Simple_repeat 2 43 0 7321 179 23 8 chr4 55780475 55780494 -146547853 - L1PB4 LINE L1 -1690 4466 4449 1514 191 20 30 chr4 55780494 55780798 -146547549 - AluJb SINE Alu -10 302 2 7321 179 23 8 chr4 55780798 55781517 -146546830 - L1PB4 LINE L1 -1707 4449 3664 368 250 130 0 chr4 55781534 55781642 -146546705 + L2 LINE L2 2632 2753 -561 1360 224 0 26 chr4 55781675 55781712 -146546635 + L1PA15-16 LINE L1 2523 2559 -4290 793 147 0 22 chr4 55781712 55781848 -146546499 + FLAM_C SINE Alu 1 133 0 1360 224 0 26 chr4 55781848 55782149 -146546198 + L1PA15-16 LINE L1 2559 2852 -3997 * 2399 218 77 110 chr4 55782145 55783622 -146544725 - L1M4 LINE L1 -1560 4586 3160 240 286 12 24 chr4 55784854 55784938 -146543409 - MER5A DNA MER1_type -100 89 7 233 103 26 0 chr4 55785060 55785099 -146543248 - L2 LINE L2 0 3313 3274 215 248 101 28 chr4 55785618 55785727 -146542620 - MIR SINE MIR -65 197 81 222 37 0 0 chr4 55786063 55786090 -146542257 + (TA)n Simple_repeat Simple_repeat 2 28 0 45 34 0 0 chr4 55786102 55786161 -146542186 + AT_rich Low_complexity Low_complexity 1 59 0 242 184 0 0 chr4 55786789 55786838 -146541509 - MLT1H LTR MaLR -15 534 486 1734 140 67 0 chr4 55786965 55787250 -146541097 + AluSq SINE Alu 1 304 -9 2330 93 30 0 chr4 55787301 55787602 -146540745 + AluSg SINE Alu 1 310 0 315 306 0 16 chr4 55787637 55787758 -146540589 - MLT1H LTR MaLR -396 153 35 950 191 64 39 chr4 55787936 55788381 -146539966 - LTR48B LTR ERV1 -2 711 132 251 315 0 0 chr4 55788384 55788473 -146539874 - MER34 LTR ERV1 -453 89 1 197 286 63 32 chr4 55789308 55789371 -146538976 + L2 LINE L2 3199 3263 -50 194 197 33 0 chr4 55789419 55789480 -146538867 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 339 25 0 0 chr4 55789914 55789954 -146538393 + (TG)n Simple_repeat Simple_repeat 2 41 0 1906 179 2 76 chr4 55790019 55790439 -146537908 - MLT1B LTR MaLR -1 389 1 570 252 104 22 chr4 55790652 55790922 -146537425 - LTR43 LTR ERV1 -124 478 187 650 204 56 14 chr4 55791858 55792074 -146536273 - L1MA6 LINE L1 -6 6294 6070 2676 117 0 0 chr4 55792339 55792732 -146535615 + LOR1a LTR ERV1 105 497 0 198 0 0 0 chr4 55792777 55792799 -146535548 + (A)n Simple_repeat Simple_repeat 1 22 0 2185 131 0 3 chr4 55793081 55793387 -146534960 + AluSx SINE Alu 1 305 -7 25 83 0 0 chr4 55793509 55793569 -146534778 + AT_rich Low_complexity Low_complexity 1 60 0 185 360 20 20 chr4 55795669 55795769 -146532578 - MIR3 SINE MIR -39 169 70 213 250 40 135 chr4 55797176 55797324 -146531023 + L2 LINE L2 2508 2641 -673 347 312 99 35 chr4 55797707 55797848 -146530499 + L2 LINE L2 3123 3272 0 273 289 47 87 chr4 55798665 55798814 -146529533 - L2 LINE L2 -2 3270 3128 288 224 218 34 chr4 55799057 55799236 -146529111 - L1ME4a LINE L1 -66 6055 5844 348 24 0 0 chr4 55800122 55800163 -146528184 + (CA)n Simple_repeat Simple_repeat 2 42 0 255 140 0 0 chr4 55800163 55800213 -146528134 + (GA)n Simple_repeat Simple_repeat 1 50 0 2246 108 56 34 chr4 55800322 55800730 -146527617 + L1MA3 LINE L1 5889 6305 0 930 135 24 18 chr4 55801649 55801819 -146526528 + MER53 DNA DNA 4 174 -15 668 117 67 8 chr4 55802021 55802141 -146526206 + LTR54B LTR ERV1 1 127 -371 265 159 299 0 chr4 55802203 55802310 -146526037 + LTR54B LTR ERV1 234 372 -126 492 155 107 0 chr4 55802311 55802414 -146525933 + MER57A-int LTR ERV1 7424 7537 0 1689 179 50 14 chr4 55802414 55802778 -146525569 + MER57A LTR ERV1 1 377 -26 1729 196 25 6 chr4 55802923 55803281 -146525066 + MLT1A1 LTR MaLR 1 365 0 684 249 14 105 chr4 55803389 55803462 -146524885 + MIR SINE MIR 10 88 -174 1820 191 56 73 chr4 55803462 55803981 -146524366 + LTR54 LTR ERV1 1 510 0 684 249 14 105 chr4 55803981 55804184 -146524163 + MIR SINE MIR 88 261 -1 957 240 45 4 chr4 55805107 55805353 -146522994 + MIR SINE MIR 7 262 0 7525 26 5 0 chr4 55805445 55806645 -146521702 + L1PA4 LINE L1 4964 6167 0 180 111 0 0 chr4 55806668 55806695 -146521652 + (A)n Simple_repeat Simple_repeat 1 27 0 1072 342 69 36 chr4 55807101 55807931 -146520416 + L2 LINE L2 2197 3057 -215 692 215 95 20 chr4 55807994 55808194 -146520153 - L2 LINE L2 -5 3308 3094 387 241 88 80 chr4 55808214 55808351 -146519996 + L2 LINE L2 3159 3296 -17 1115 195 93 60 chr4 55808416 55808846 -146519501 + LTR56 LTR ERV1 1 444 -1 387 253 29 63 chr4 55810026 55810234 -146518113 - MIR SINE MIR -50 212 17 254 106 21 0 chr4 55810612 55810659 -146517688 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 661 171 81 0 chr4 55810868 55810991 -146517356 - FLAM_A SINE Alu 0 133 1 1204 188 5 10 chr4 55811121 55811328 -146517019 - AluJb SINE Alu -106 206 1 21 0 0 0 chr4 55811335 55811356 -146516991 + AT_rich Low_complexity Low_complexity 1 21 0 2103 97 29 0 chr4 55811393 55811672 -146516675 + AluSg SINE Alu 3 289 -21 238 187 0 53 chr4 55812460 55812535 -146515812 - L1ME4a LINE L1 0 6121 6051 34 42 0 0 chr4 55812535 55812583 -146515764 + AT_rich Low_complexity Low_complexity 1 48 0 1661 171 0 11 chr4 55812583 55812846 -146515501 - AluSx SINE Alu -52 260 1 438 279 73 18 chr4 55813684 55813849 -146514498 - MLT1J LTR MaLR -312 199 26 1028 214 11 34 chr4 55815053 55815319 -146513028 + MER46C DNA MER2_type 71 330 -8 267 248 202 0 chr4 55816189 55816298 -146512049 + L2 LINE L2 2871 3001 -312 233 219 31 31 chr4 55816334 55816398 -146511949 + L2 LINE L2 3209 3272 0 243 88 0 0 chr4 55816611 55816645 -146511702 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 685 98 0 11 chr4 55817124 55817216 -146511131 + AluJb SINE Alu 24 114 -198 322 223 72 29 chr4 55817361 55817500 -146510847 - L1ME4a LINE L1 0 6121 5977 330 304 19 25 chr4 55817608 55817769 -146510578 - L1ME4a LINE L1 -196 5925 5766 690 249 54 29 chr4 55817771 55818048 -146510299 - L1ME LINE L1 -308 5813 5530 2289 94 3 0 chr4 55818233 55818520 -146509827 - AluSp SINE Alu -25 288 1 1171 209 87 22 chr4 55818854 55818893 -146509454 - MLT2B3 LTR ERVL 0 554 519 588 33 44 0 chr4 55818893 55818983 -146509364 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 4014 169 24 3 chr4 55818983 55819688 -146508659 + MER72 LTR ERV1 2 721 -1 1171 209 87 22 chr4 55819688 55819958 -146508389 - MLT2B3 LTR ERVL -34 520 224 3128 132 16 0 chr4 55820291 55820805 -146507542 - L1MA6 LINE L1 -10 6472 5951 39669 47 21 1 chr4 55820824 55826849 -146501498 - L1PA3 LINE L1 -4 6151 3 14256 196 33 26 chr4 55826848 55832223 -146496124 - L1MA6 LINE L1 -522 5960 552 * 1053 309 40 3 chr4 55832757 55833084 -146495263 - L1MA6 LINE L1 -5614 635 297 300 285 81 0 chr4 55833093 55833216 -146495131 + MLT1J LTR MaLR 65 197 -314 219 36 0 0 chr4 55833730 55833758 -146494589 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2153 146 0 9 chr4 55833801 55834116 -146494231 + AluSx SINE Alu 1 312 0 2090 112 3 7 chr4 55834560 55834846 -146493501 - AluSx SINE Alu -27 285 1 2179 129 3 0 chr4 55835056 55835365 -146492982 + AluSp SINE Alu 1 310 -3 381 314 40 57 chr4 55835533 55835719 -146492628 + L1M4 LINE L1 3514 3697 -2449 2078 74 0 0 chr4 55835719 55835975 -146492372 + AluY SINE Alu 39 294 -17 381 314 40 57 chr4 55835975 55836036 -146492311 + L1M4 LINE L1 3697 3757 -2389 364 282 79 25 chr4 55836039 55836241 -146492106 + L1M4 LINE L1 3733 3945 -2201 331 299 164 22 chr4 55836561 55836969 -146491378 + L1M4 LINE L1 4499 4964 -1182 773 307 98 31 chr4 55837008 55837428 -146490919 - MLT1E LTR MaLR -145 448 1 950 270 31 0 chr4 55837566 55837788 -146490559 + MIR SINE MIR 21 249 -13 933 212 35 5 chr4 55837917 55838120 -146490227 + MER6B DNA MER2_type 2 210 0 292 153 56 49 chr4 55838697 55838841 -146489506 + (CACAA)n Simple_repeat Simple_repeat 4 148 0 6343 204 64 51 chr4 55839043 55840737 -146487610 + MSTD-int LTR MaLR 20 1735 0 689 169 136 71 chr4 55840737 55841045 -146487302 + MSTD LTR MaLR 1 396 0 1027 198 8 53 chr4 55841062 55841325 -146487022 + MLT1A2 LTR MaLR 124 374 0 1595 144 125 78 chr4 55841744 55842153 -146486194 - MSTA LTR MaLR 0 428 1 5706 150 76 13 chr4 55842153 55842317 -146486030 - MSTA-int LTR MaLR 0 1580 1428 450 0 0 0 chr4 55842317 55842367 -146485980 + (TAAAA)n Simple_repeat Simple_repeat 1 50 0 5706 150 76 13 chr4 55842367 55842927 -146485420 - MSTA-int LTR MaLR -152 1428 905 195 42 0 0 chr4 55842927 55842951 -146485396 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 207 0 0 0 chr4 55842950 55842973 -146485374 + (GA)n Simple_repeat Simple_repeat 2 24 0 5706 150 76 13 chr4 55842951 55843375 -146484972 - MSTA-int LTR MaLR -675 905 423 1809 132 11 22 chr4 55843376 55843725 -146484622 - MER4A LTR ERV1 0 664 261 569 140 0 30 chr4 55843726 55843826 -146484521 - MER4A LTR ERV1 -567 97 1 2302 157 12 0 chr4 55843842 55844244 -146484103 - MSTA-int LTR MaLR -1171 409 3 768 152 146 0 chr4 55844246 55844397 -146483950 - MSTA LTR MaLR 0 428 256 3540 183 31 19 chr4 55844911 55845615 -146482732 + MER72 LTR ERV1 10 722 0 3139 152 60 0 chr4 55845857 55846378 -146481969 - MER41C LTR ERV1 -2 552 1 4167 71 2 0 chr4 55846378 55846926 -146481421 - MER41C-int LTR ERV1 0 7756 7208 * 14238 91 2 3 chr4 55846922 55848926 -146479421 - MER41C-int LTR ERV1 -1361 6395 4394 11057 96 35 18 chr4 55848921 55850587 -146477760 - MER41C-int LTR ERV1 -4701 3055 1363 * 6395 98 44 3 chr4 55850579 55851471 -146476876 - MER41C-int LTR ERV1 -6826 930 3 * 3505 140 65 0 chr4 55851473 55851993 -146476354 - MER41C LTR ERV1 0 554 1 5439 86 25 0 chr4 55852183 55852857 -146475490 + LTR8 LTR ERV1 1 691 0 713 195 46 46 chr4 55853055 55853229 -146475118 + MLT1J LTR MaLR 23 196 -315 1773 316 77 10 chr4 55853268 55853891 -146474456 + MER115 DNA AcHobo 7 671 -22 459 230 81 73 chr4 55853907 55854155 -146474192 + MLT1J LTR MaLR 227 476 -35 777 223 34 39 chr4 55854325 55854489 -146473858 + MIR SINE MIR 31 195 -67 1913 202 26 3 chr4 55854489 55854841 -146473506 - MLT1A1 LTR MaLR -2 363 4 777 223 34 39 chr4 55854841 55854909 -146473438 + MIR SINE MIR 195 262 0 673 242 124 38 chr4 55854938 55855233 -146473114 - MLT1I LTR MaLR -19 390 96 355 336 0 0 chr4 55855678 55855782 -146472565 + MLT1I LTR MaLR 63 166 -243 461 253 51 6 chr4 55856315 55856473 -146471874 - L2 LINE L2 -65 3248 3084 24 0 0 0 chr4 55856986 55857010 -146471337 + AT_rich Low_complexity Low_complexity 1 24 0 209 308 177 32 chr4 55857177 55857371 -146470976 + MIR SINE MIR 40 261 -1 1124 156 131 134 chr4 55857400 55857465 -146470882 + MLT1A1 LTR MaLR 1 65 -300 2726 124 3 0 chr4 55857465 55857828 -146470519 - THE1B LTR MaLR 0 364 1 1124 156 131 134 chr4 55857828 55858128 -146470219 + MLT1A1 LTR MaLR 65 365 0 381 249 30 79 chr4 55858174 55858339 -146470008 - MER103 DNA DNA -8 158 2 2287 119 0 0 chr4 55858638 55858950 -146469397 + AluSx SINE Alu 1 312 0 289 277 185 0 chr4 55859644 55859774 -146468573 + MIR SINE MIR 100 253 -9 217 269 19 39 chr4 55860294 55860398 -146467949 + GA-rich Low_complexity Low_complexity 2 103 0 749 236 62 70 chr4 55860659 55860917 -146467430 + MIR SINE MIR 7 262 0 612 260 120 21 chr4 55860982 55861174 -146467173 - MIR SINE MIR -21 241 31 488 245 20 0 chr4 55861192 55861294 -146467053 + MER58A DNA MER1_type 37 140 0 465 229 0 18 chr4 55861378 55861487 -146466860 + MER53 DNA DNA 1 107 -82 2159 164 16 46 chr4 55861762 55862149 -146466198 + L1MA8 LINE L1 5844 6218 -73 2519 139 56 15 chr4 55862149 55862560 -146465787 + MSTA LTR MaLR 1 428 0 2159 164 16 46 chr4 55862560 55862604 -146465743 + L1MA8 LINE L1 6218 6262 -29 1910 264 55 32 chr4 55863343 55863911 -146464436 + MLT1G LTR MaLR 10 590 0 180 0 0 0 chr4 55863922 55863942 -146464405 + (GA)n Simple_repeat Simple_repeat 1 20 0 271 316 145 0 chr4 55864963 55865080 -146463267 - MIR3 SINE MIR -41 167 34 2543 80 0 0 chr4 55865549 55865860 -146462487 + AluY SINE Alu 1 311 0 180 0 0 0 chr4 55865865 55865885 -146462462 + (TA)n Simple_repeat Simple_repeat 2 21 0 27707 49 5 0 chr4 55866002 55869437 -146458910 - L1P LINE L1 -865 5281 1831 43438 53 3 4 chr4 55869502 55875636 -146452711 + L1PA3 LINE L1 27 6155 0 9472 81 5 0 chr4 55875648 55876883 -146451464 - L1P LINE L1 -4304 1842 602 5665 73 7 0 chr4 55876880 55877956 -146450391 - L1P2 LINE L1 -443 5711 4631 * 26024 112 13 12 chr4 55877950 55881844 -146446503 - L1P2 LINE L1 -2238 3908 13 788 240 17 6 chr4 55881855 55882030 -146446317 - L1M4 LINE L1 -1979 4167 3991 243 0 0 0 chr4 55882153 55882180 -146446167 + (TA)n Simple_repeat Simple_repeat 1 27 0 2066 146 0 0 chr4 55882222 55882524 -146445823 + AluSx SINE Alu 6 307 -5 3747 143 39 25 chr4 55882767 55882895 -146445452 + L1MA9 LINE L1 5654 5779 -533 279 0 0 0 chr4 55882895 55882926 -146445421 + (CA)n Simple_repeat Simple_repeat 2 32 0 3747 143 39 25 chr4 55882926 55883447 -146444900 + L1MA9 LINE L1 5779 6312 0 213 225 0 0 chr4 55885081 55885121 -146443226 + (TG)n Simple_repeat Simple_repeat 2 41 0 198 171 0 0 chr4 55885266 55885307 -146443040 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 733 248 54 27 chr4 55885571 55885617 -146442730 - MIR SINE MIR -17 245 202 1973 115 112 0 chr4 55885617 55885922 -146442425 - MER44D DNA MER2_type 0 609 1 733 248 54 27 chr4 55885922 55886097 -146442250 - MIR SINE MIR -60 202 18 276 326 29 14 chr4 55886323 55886461 -146441886 + HAL1b LINE L1 1191 1330 -18 317 261 169 21 chr4 55886521 55886663 -146441684 + MIR SINE MIR 29 191 -71 295 266 159 66 chr4 55887332 55887411 -146440936 + LTR67 LTR ERVL 118 188 -369 3080 154 18 42 chr4 55887411 55887955 -146440392 - LTR26B LTR ERV1 0 531 1 295 266 159 66 chr4 55887955 55888270 -146440077 + LTR67 LTR ERVL 188 549 -8 784 206 29 11 chr4 55888514 55888689 -146439658 + MER5B DNA MER1_type 1 178 0 871 117 49 127 chr4 55888696 55888763 -146439584 + MER5A DNA MER1_type 1 72 -117 1970 145 30 0 chr4 55888763 55889067 -146439280 + AluSq SINE Alu 1 313 0 871 117 49 127 chr4 55889067 55889204 -146439143 + MER5A DNA MER1_type 72 189 0 209 275 301 26 chr4 55890416 55890609 -146437738 - MIR SINE MIR 0 262 17 308 305 85 33 chr4 55890806 55891121 -146437226 - L2 LINE L2 -238 3034 2633 309 299 63 8 chr4 55891123 55891250 -146437097 - L2 LINE L2 -12 3301 3168 187 71 14 157 chr4 55891503 55891544 -146436803 - MER5C DNA MER1_type -207 117 87 1994 130 0 7 chr4 55891544 55891867 -146436480 - AluSx SINE Alu 0 321 1 187 71 14 157 chr4 55891867 55891894 -146436453 - MER5C DNA MER1_type -237 87 58 993 129 5 54 chr4 55893008 55893194 -146435153 + FRAM SINE Alu 1 172 -4 201 147 0 0 chr4 55893368 55893402 -146434945 + (A)n Simple_repeat Simple_repeat 1 34 0 640 226 19 13 chr4 55894178 55894333 -146434014 - MLT1C LTR MaLR 0 467 312 226 191 0 0 chr4 55894333 55894375 -146433972 - MSTA LTR MaLR 0 428 387 25420 132 16 30 chr4 55894375 55900885 -146427462 + L1PA8A LINE L1 3 6446 0 1855 133 147 11 chr4 55900885 55901238 -146427109 - MSTA LTR MaLR -27 401 1 1099 210 55 39 chr4 55901240 55901549 -146426798 - MLT1C LTR MaLR -153 314 1 203 267 0 0 chr4 55901613 55901658 -146426689 + MIR SINE MIR 99 143 -119 1084 68 0 7 chr4 55901923 55902069 -146426278 - MER4A LTR ERV1 -519 145 1 6155 163 24 4 chr4 55902253 55904248 -146424099 - L1PA16 LINE L1 -9 6157 4125 493 242 94 62 chr4 55904882 55905278 -146423069 + MLT1F1 LTR MaLR 2 413 -154 8110 101 5 1 chr4 55905310 55907174 -146421173 - L1PA7 LINE L1 0 6154 4287 7472 101 4 28 chr4 55907175 55908252 -146420095 + MER11C LTR ERVK 7 1057 -14 1584 89 0 0 chr4 55908288 55908490 -146419857 - L1PA7 LINE L1 -1846 4300 4099 570 221 118 41 chr4 55908490 55908685 -146419662 + MLT1F1 LTR MaLR 384 567 0 192 107 18 36 chr4 55908705 55908761 -146419586 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 766 188 0 8 chr4 55909396 55909513 -146418834 + FLAM_C SINE Alu 2 117 -26 195 69 0 0 chr4 55909514 55909543 -146418804 + (TC)n Simple_repeat Simple_repeat 2 30 0 229 89 44 0 chr4 55909544 55909589 -146418758 + (TA)n Simple_repeat Simple_repeat 2 48 0 392 282 291 5 chr4 55909652 55909858 -146418489 - L2 LINE L2 -992 2322 2058 646 314 14 28 chr4 55910168 55910451 -146417896 + L2 LINE L2 3025 3303 -10 5196 126 57 57 chr4 55910509 55911326 -146417021 + L1MA9 LINE L1 5109 5925 -387 8103 33 0 0 chr4 55911326 55912415 -146415932 + L1PA3 LINE L1 5065 6152 -3 5196 126 57 57 chr4 55912415 55912450 -146415897 + L1MA9 LINE L1 5925 5959 -353 2098 68 57 7 chr4 55912450 55912730 -146415617 + AluY SINE Alu 1 294 -17 5196 126 57 57 chr4 55912730 55913077 -146415270 + L1MA9 LINE L1 5959 6311 -1 563 147 18 55 chr4 55913084 55913193 -146415154 - L1MD1 LINE L1 -9 6627 6523 227 114 0 114 chr4 55913193 55913237 -146415110 - L1MD1 LINE L1 -583 6170 6132 * 948 157 113 0 chr4 55913225 55913410 -146414937 - L1MA7 LINE L1 -426 5865 5660 2128 189 20 11 chr4 55913414 55913864 -146414483 - L1MD1 LINE L1 -499 6137 5684 1677 219 67 17 chr4 55914019 55914485 -146413862 - L1MD1 LINE L1 -847 5693 5205 3513 115 0 22 chr4 55914494 55915000 -146413347 + MER1A DNA MER1_type 35 529 0 5975 251 101 49 chr4 55915002 55916126 -146412221 - L1MD1 LINE L1 -1330 5210 4146 2318 113 0 0 chr4 55916126 55916435 -146411912 - AluSc SINE Alu 0 309 1 5975 251 101 49 chr4 55916435 55917725 -146410622 - L1MD1 LINE L1 -2394 4146 2925 2121 138 67 0 chr4 55917725 55918066 -146410281 - MER47A DNA MER2_type -2 364 1 5975 251 101 49 chr4 55918066 55918198 -146410149 - L1MD1 LINE L1 -3615 2925 2801 1173 82 0 0 chr4 55918198 55918345 -146410002 - L1PA8 LINE L1 0 6172 6026 2116 121 26 0 chr4 55918354 55918659 -146409688 - AluSq SINE Alu 0 313 1 5975 251 101 49 chr4 55918659 55919040 -146409307 - L1MD1 LINE L1 -3746 2794 2106 228 114 0 0 chr4 55919049 55919084 -146409263 - AluSc SINE Alu -33 266 232 1422 93 42 0 chr4 55919084 55919277 -146409070 - AluSc SINE Alu -108 201 1 620 163 30 59 chr4 55919279 55919414 -146408933 - AluJo/FLAM SINE Alu -170 132 2 2341 79 7 0 chr4 55919435 55919739 -146408608 - AluY SINE Alu -5 306 1 912 190 6 29 chr4 55919740 55919914 -146408433 - MER21B LTR ERV1 -545 318 149 293 226 0 108 chr4 55920067 55920160 -146408187 - MER21B LTR ERV1 -765 98 16 1332 122 54 0 chr4 55920160 55920382 -146407965 + MER44D DNA MER2_type 1 504 -105 22 0 0 0 chr4 55920393 55920415 -146407932 + AT_rich Low_complexity Low_complexity 1 22 0 883 124 23 0 chr4 55920416 55920545 -146407802 - FLAM_C SINE Alu -11 132 1 542 171 0 124 chr4 55920546 55920675 -146407672 + MER44D DNA MER2_type 493 605 0 2607 171 35 21 chr4 55920702 55921270 -146407077 - L1MD1 LINE L1 -4464 2076 1501 274 283 142 17 chr4 55922020 55922140 -146406207 + L2 LINE L2 3134 3268 -4 244 338 0 14 chr4 55922217 55922288 -146406059 - L2 LINE L2 -2 3270 3201 269 266 0 0 chr4 55922445 55922509 -146405838 + MER58 DNA MER1_type 2357 2420 0 947 251 119 10 chr4 55922885 55922954 -146405393 - L2 LINE L2 -378 2936 2876 2390 132 28 6 chr4 55922954 55923310 -146405037 + THE1B LTR MaLR 1 364 0 947 251 119 10 chr4 55923310 55923543 -146404804 - L2 LINE L2 -438 2876 2601 2299 102 3 0 chr4 55923690 55924016 -146404331 + AluSp SINE Alu 1 313 0 330 299 129 10 chr4 55924016 55924201 -146404146 - MARNA DNA Mariner -361 225 15 214 315 54 11 chr4 55925548 55925640 -146402707 + MIR SINE MIR 117 212 -50 239 367 0 8 chr4 55925760 55925880 -146402467 - L2 LINE L2 -217 3055 2937 805 199 0 0 chr4 55925989 55926130 -146402217 - MER89 LTR ERV1 0 559 419 694 165 0 9 chr4 55926158 55926273 -146402074 - MER89 LTR ERV1 -122 437 324 1605 83 5 5 chr4 55926273 55926491 -146401856 - pTR5 LTR ERV1 -2050 388 171 357 204 31 20 chr4 55926493 55926591 -146401756 - LTR30 LTR ERV1 -80 642 544 5799 122 47 62 chr4 55926591 55927758 -146400589 - pTR5 LTR ERV1 -413 2025 743 919 192 111 13 chr4 55927758 55927992 -146400355 - MER89 LTR ERV1 -229 330 74 597 244 54 45 chr4 55928094 55928315 -146400032 - MER89 LTR ERV1 -336 223 1 2300 125 73 14 chr4 55929574 55929918 -146398429 - THE1B LTR MaLR 0 364 1 1104 174 42 14 chr4 55929970 55930183 -146398164 + MER20 DNA MER1_type 1 219 0 317 320 70 101 chr4 55930426 55930754 -146397593 + L2 LINE L2 2926 3243 -29 193 216 0 0 chr4 55930889 55930926 -146397421 + MIR SINE MIR 197 233 -29 601 306 121 18 chr4 55931234 55931574 -146396773 + MLT1J2 LTR MaLR 76 450 0 539 315 77 38 chr4 55932174 55932514 -146395833 + HAL1 LINE L1 744 1096 -1411 243 314 10 10 chr4 55932537 55932639 -146395708 + MLT1F1 LTR MaLR 24 125 -442 3085 191 3 8 chr4 55932653 55933243 -146395104 + L1MC3 LINE L1 7198 7784 -1 551 302 26 19 chr4 55933236 55933504 -146394843 + HAL1 LINE L1 1072 1341 -1166 * 247 106 0 0 chr4 55933537 55933584 -146394763 + LTR66 LTR ERVL 394 440 -170 1121 272 49 8 chr4 55934475 55934861 -146393486 + HAL1 LINE L1 1388 1789 -718 287 224 0 0 chr4 55935374 55935432 -146392915 + HAL1 LINE L1 2245 2302 -205 2159 145 3 0 chr4 55935617 55935928 -146392419 - AluJb SINE Alu 0 312 1 189 0 0 0 chr4 55936328 55936349 -146391998 + (CA)n Simple_repeat Simple_repeat 2 22 0 246 116 0 0 chr4 55936419 55936462 -146391885 + (CA)n Simple_repeat Simple_repeat 2 44 0 213 139 0 0 chr4 55936544 55936587 -146391760 + (CA)n Simple_repeat Simple_repeat 1 43 0 181 274 0 20 chr4 55936622 55936673 -146391674 + L2 LINE L2 3261 3310 -3 192 246 70 18 chr4 55936689 55936746 -146391601 + L2 LINE L2 3127 3186 -86 595 325 33 33 chr4 55937099 55937280 -146391067 + MIR SINE MIR 13 196 -66 1322 226 86 43 chr4 55937280 55937652 -146390695 - MLT1B LTR MaLR 0 390 3 595 325 33 33 chr4 55937652 55937710 -146390637 + MIR SINE MIR 195 252 -10 200 287 146 27 chr4 55938774 55938962 -146389385 - MIR SINE MIR -6 256 45 184 158 79 0 chr4 55939736 55939774 -146388573 - L2 LINE L2 -1896 1418 1378 555 256 80 6 chr4 55939933 55940109 -146388238 + L1ME4a LINE L1 5682 5870 -251 225 289 23 55 chr4 55940304 55940432 -146387915 - L2 LINE L2 -647 2667 2544 286 326 0 0 chr4 55940458 55940544 -146387803 + (TGG)n Simple_repeat Simple_repeat 2 87 0 1381 232 62 68 chr4 55940659 55940766 -146387581 + MER113 DNA MER1_type? 11 117 -404 213 65 0 0 chr4 55940766 55940797 -146387550 + (TTA)n Simple_repeat Simple_repeat 3 33 0 962 53 9 0 chr4 55940797 55940910 -146387437 - L1PA3 LINE L1 -18 6137 6024 1381 232 62 68 chr4 55940910 55941271 -146387076 + MER113 DNA MER1_type? 115 477 -44 22 35 0 0 chr4 55941734 55941763 -146386584 + AT_rich Low_complexity Low_complexity 1 29 0 271 162 105 76 chr4 55941892 55941997 -146386350 - MIR SINE MIR -56 206 99 3545 74 35 7 chr4 55942038 55942058 -146386289 - L1PA8 LINE L1 -2 6170 6152 2597 58 0 0 chr4 55942058 55942368 -146385979 + AluY SINE Alu 1 310 -1 3545 74 35 7 chr4 55942368 55942804 -146385543 - L1PA8 LINE L1 -20 6152 5701 189 0 0 0 chr4 55944364 55944385 -146383962 + (CA)n Simple_repeat Simple_repeat 2 22 0 538 153 51 0 chr4 55944444 55944542 -146383805 + MER68 LTR ERV1 1 103 -459 225 65 65 0 chr4 55944565 55944596 -146383751 - MLT1J LTR MaLR -478 33 1 393 114 0 57 chr4 55944668 55944738 -146383609 + MER68 LTR ERV1 188 253 -309 349 180 110 60 chr4 55944739 55944839 -146383508 + MER68 LTR ERV1 450 554 -8 1282 230 86 39 chr4 55944845 55945228 -146383119 - MLT1J LTR MaLR -110 401 1 488 226 91 84 chr4 55946905 55947320 -146381027 - MLT1J LTR MaLR -42 469 19 284 281 72 43 chr4 55947516 55947655 -146380692 + MIR SINE MIR 2 144 -118 1650 152 12 4 chr4 55947936 55948193 -146380154 + AluJb SINE Alu 25 283 -29 389 316 13 123 chr4 55948380 55948681 -146379666 + L2 LINE L2 3004 3271 -1 264 270 9 81 chr4 55948889 55949000 -146379347 + MIR SINE MIR 88 190 -72 830 219 117 0 chr4 55949944 55950140 -146378207 - MER20 DNA MER1_type 0 219 1 583 282 40 5 chr4 55950154 55950356 -146377991 - L1M4 LINE L1 -3463 2683 2475 1878 131 0 0 chr4 55950363 55950623 -146377724 - AluSx SINE Alu -19 293 34 612 164 75 22 chr4 55950656 55950790 -146377557 - MER20 DNA MER1_type -78 141 1 876 184 7 0 chr4 55951168 55951320 -146377027 + FRAM SINE Alu 1 151 -25 926 280 25 21 chr4 55951489 55951775 -146376572 - MLT1L LTR MaLR -11 604 318 227 250 28 14 chr4 55951902 55951974 -146376373 - MLT1L LTR MaLR -532 83 11 5063 53 12 7 chr4 55952042 55952647 -146375700 - L1PA7 LINE L1 -2 6152 5545 359 305 52 52 chr4 55952655 55952809 -146375538 - MIR SINE MIR -104 158 5 194 0 39 0 chr4 55953280 55953306 -146375041 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 458 269 42 124 chr4 55953831 55954162 -146374185 + L2 LINE L2 2909 3212 -60 920 259 86 75 chr4 55954282 55954816 -146373531 + MER115 DNA AcHobo 42 690 -3 243 0 0 0 chr4 55955781 55955808 -146372539 + (CA)n Simple_repeat Simple_repeat 2 28 0 242 231 39 135 chr4 55956136 55956344 -146372003 + L1MC4 LINE L1 7829 8016 -26 22 70 0 0 chr4 55956344 55956387 -146371960 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr4 55956802 55956825 -146371522 + AT_rich Low_complexity Low_complexity 1 23 0 807 93 19 0 chr4 55959008 55959115 -146369232 + AluSp/q SINE Alu 190 298 -15 7933 36 0 0 chr4 55959422 55960348 -146367999 - L1PA4 LINE L1 -2 6153 5226 24693 88 6 6 chr4 55960653 55964005 -146364342 + L1P LINE L1 11 3361 -2785 1521 204 58 29 chr4 55964158 55964365 -146363982 + L1ME LINE L1 4770 4970 -1176 2684 99 34 0 chr4 55964365 55964717 -146363630 - THE1B LTR MaLR 0 364 1 1521 204 58 29 chr4 55964717 55964926 -146363421 + L1ME LINE L1 4970 5198 -948 2704 163 50 2 chr4 55964936 55965379 -146362968 + L1P3 LINE L1 10 473 -5988 4271 91 9 0 chr4 55965483 55966034 -146362313 - L1PA14 LINE L1 0 6161 5606 2171 55 4 7 chr4 55966972 55967244 -146361103 - AluY SINE Alu -40 271 1 263 308 73 38 chr4 55967413 55967710 -146360637 - L1ME LINE L1 -359 5762 5450 1535 130 30 4 chr4 55967710 55967940 -146360407 + MER46A DNA MER2_type 1 236 0 263 308 73 38 chr4 55967940 55967983 -146360364 - L1ME LINE L1 -671 5450 5410 840 73 0 40 chr4 55968666 55968790 -146359557 + L1PA8 LINE L1 6052 6170 -2 689 214 68 19 chr4 55968796 55969002 -146359345 + L1ME LINE L1 5185 5400 -746 713 218 75 11 chr4 55969010 55969184 -146359163 + L1ME LINE L1 5480 5664 -502 267 118 235 0 chr4 55969184 55969235 -146359112 + AluS SINE Alu 1 63 -240 569 245 47 62 chr4 55969356 55969548 -146358799 - MIR SINE MIR -56 206 18 376 198 198 16 chr4 55969636 55969762 -146358585 - MER5B DNA MER1_type -10 168 20 736 154 8 17 chr4 55970124 55970241 -146358106 - FLAM_A SINE Alu -20 122 7 5437 161 42 21 chr4 55970550 55971609 -146356738 + L1P3 LINE L1 1272 2352 -4109 241 236 0 0 chr4 55972420 55972475 -146355872 + FLAM SINE Alu 67 121 -12 1878 145 10 7 chr4 55972572 55972862 -146355485 + AluJo SINE Alu 6 296 -16 1313 115 8 107 chr4 55972965 55973062 -146355285 - AluSq SINE Alu -102 211 106 2045 102 7 14 chr4 55973062 55973355 -146354992 - AluSc SINE Alu -18 291 1 1313 115 8 107 chr4 55973355 55973491 -146354856 - AluSq SINE Alu -207 106 1 388 305 204 43 chr4 55973600 55974450 -146353897 + L2 LINE L2 552 1537 -1777 495 96 0 43 chr4 55974550 55974665 -146353682 - SVA Other Other -612 774 665 1147 127 94 75 chr4 55974682 55975108 -146353239 - SVA Other Other -520 866 433 5431 71 36 54 chr4 55975165 55975992 -146352355 - SVA Other Other -518 868 57 366 23 0 0 chr4 55975992 55976035 -146352312 + (GGGAGA)n Simple_repeat Simple_repeat 1 43 0 13959 52 1 1 chr4 55976036 55977746 -146350601 - L1P LINE L1 -1012 5134 3424 2238 94 3 10 chr4 55977884 55978193 -146350154 - AluSc SINE Alu -2 307 1 854 182 12 24 chr4 55978193 55978358 -146349989 + AluJb SINE Alu 117 279 -33 2047 138 0 0 chr4 55979162 55979453 -146348894 - AluJb SINE Alu -21 291 1 1109 152 35 113 chr4 55979931 55980036 -146348311 - MLT1B LTR MaLR 0 390 278 1690 85 36 5 chr4 55980036 55980259 -146348088 + MER30 DNA MER1_type 1 230 0 1109 152 35 113 chr4 55980259 55980446 -146347901 - MLT1B LTR MaLR -112 278 130 3732 177 13 81 chr4 55980451 55980956 -146347391 - L1PB1 LINE L1 -12 6139 5602 717 135 0 0 chr4 55980956 55981060 -146347287 - U13 snRNA snRNA 0 104 1 3732 177 13 81 chr4 55981060 55981440 -146346907 - L1PB1 LINE L1 -549 5602 5362 2127 92 13 32 chr4 55981440 55981676 -146346671 - L1MA2 LINE L1 0 6304 6074 1737 169 3 35 chr4 55981676 55981990 -146346357 - AluJb SINE Alu -8 304 1 2127 92 13 32 chr4 55981990 55982069 -146346278 - L1MA2 LINE L1 -230 6074 5995 3732 177 13 81 chr4 55982069 55982489 -146345858 - L1PB1 LINE L1 -789 5362 4915 702 184 7 21 chr4 55982489 55982630 -146345717 - MLT1B LTR MaLR -251 139 1 1281 255 129 29 chr4 55983455 55984271 -146344076 - L2 LINE L2 0 3313 2428 372 138 0 0 chr4 55984440 55984505 -146343842 + (TTCA)n Simple_repeat Simple_repeat 2 66 0 181 241 37 19 chr4 55984946 55985000 -146343347 - L2 LINE L2 -609 2705 2651 3668 184 63 11 chr4 55985280 55986088 -146342259 - MER45R DNA AcHobo -47 1534 685 732 65 0 0 chr4 55986095 55986187 -146342160 + L1PA4 LINE L1 1 92 -6054 38306 45 9 3 chr4 55986187 55991691 -146336656 + L1PA4 LINE L1 617 6154 -1 5119 191 29 30 chr4 55992343 55992727 -146335620 + Charlie1a DNA MER1_type 108 491 -2270 2281 167 3 19 chr4 55992727 55993098 -146335249 - MLT1A1 LTR MaLR 0 365 1 5119 191 29 30 chr4 55993098 55993861 -146334486 + Charlie1a DNA MER1_type 491 1253 -202 2669 205 26 48 chr4 55993865 55994553 -146333794 - L1ME1 LINE L1 -5 6161 5489 499 168 37 0 chr4 55994695 55994733 -146333614 - L1ME1 LINE L1 -761 5405 5370 1634 229 58 32 chr4 55994733 55995165 -146333182 - LTR47B LTR ERVL 0 443 1 499 168 37 0 chr4 55995165 55995267 -146333080 - L1ME1 LINE L1 -796 5370 5301 15085 172 35 18 chr4 55995271 55996122 -146332225 - L1MA4A LINE L1 -11 6994 6158 750 126 29 0 chr4 55996122 55996225 -146332122 - U6 snRNA snRNA -1 106 1 15085 172 35 18 chr4 55996225 55996518 -146331829 - L1MA4A LINE L1 -847 6158 5871 2189 142 47 33 chr4 55996518 55996877 -146331470 - THE1B LTR MaLR 0 364 1 15085 172 35 18 chr4 55996877 55997337 -146331010 - L1MA4A LINE L1 -1134 5871 5420 1904 81 100 8 chr4 55997337 55997597 -146330750 - AluSq SINE Alu -29 284 1 15085 172 35 18 chr4 55997597 56000230 -146328117 - L1MA4A LINE L1 -1585 5420 2688 239 186 0 17 chr4 56000236 56000295 -146328052 + CT-rich Low_complexity Low_complexity 4 61 0 1136 68 17 11 chr4 56000300 56000385 -146327962 + (TTCC)n Simple_repeat Simple_repeat 1 84 -94 2501 70 0 0 chr4 56000385 56000687 -146327660 - AluY SINE Alu -9 302 1 1136 68 17 11 chr4 56000687 56000778 -146327569 + (TTCC)n Simple_repeat Simple_repeat 84 178 0 905 40 52 29 chr4 56000783 56000956 -146327391 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 2520 247 70 71 chr4 56000974 56001979 -146326368 - L1M4 LINE L1 -5536 1006 3 1244 224 93 26 chr4 56001979 56002016 -146326331 - L1MEc LINE L1 -2982 3233 3200 2378 159 3 3 chr4 56002016 56002381 -146325966 - MER47A DNA MER2_type 0 366 2 1244 224 93 26 chr4 56002381 56002838 -146325509 - L1MEc LINE L1 -3015 3200 2706 2369 258 71 22 chr4 56002847 56003856 -146324491 - L1MEc LINE L1 -4024 2372 1314 1909 256 18 7 chr4 56003863 56004422 -146323925 - L1MEc LINE L1 -5472 924 360 1088 134 0 27 chr4 56004423 56004609 -146323738 + MER1B DNA MER1_type 1 181 -116 347 213 11 43 chr4 56004606 56004700 -146323647 + MER1B DNA MER1_type 243 333 0 * 263 232 145 0 chr4 56004700 56004769 -146323578 - L1MEc LINE L1 -6033 363 285 347 175 0 0 chr4 56004818 56004881 -146323466 + MER58 DNA MER1_type 2355 2417 -3 621 217 0 81 chr4 56004882 56005080 -146323267 - L1MEc LINE L1 -6171 225 44 635 137 33 38 chr4 56005091 56005274 -146323073 + Charlie1a DNA MER1_type 1233 1414 -41 22 0 0 0 chr4 56005279 56005301 -146323046 + AT_rich Low_complexity Low_complexity 1 22 0 860 114 0 0 chr4 56005301 56005415 -146322932 - AluSc SINE Alu -24 285 172 3002 180 41 2 chr4 56005421 56006032 -146322315 - L1MC2 LINE L1 -21 6323 5689 446 355 12 83 chr4 56006179 56006503 -146321844 - L2 LINE L2 -4 3268 2968 290 237 21 41 chr4 56006568 56006665 -146321682 + CT-rich Low_complexity Low_complexity 5 99 0 977 201 170 61 chr4 56006738 56007067 -146321280 - MSTD LTR MaLR 0 396 1 394 244 101 12 chr4 56008071 56008239 -146320108 + L1M4 LINE L1 2401 2583 -3563 * 757 235 21 51 chr4 56008227 56008461 -146319886 + L1ME2 LINE L1 5935 6161 -3 989 298 56 20 chr4 56008481 56008823 -146319524 - L2 LINE L2 -957 2357 2004 11747 30 4 2 chr4 56008823 56010603 -146317744 - L1PA3 LINE L1 -470 5685 3902 3742 46 0 0 chr4 56010603 56011054 -146317293 + L1PA3 LINE L1 5699 6155 0 557 268 80 36 chr4 56011054 56011278 -146317069 - L2 LINE L2 -1304 2010 1777 862 267 143 42 chr4 56011818 56012271 -146316076 - MLT1J LTR MaLR -7 504 6 1401 180 89 126 chr4 56012520 56013058 -146315289 + MLT2B1 LTR ERVL 1 518 -2 248 349 128 0 chr4 56013111 56013220 -146315127 - MIR3 SINE MIR -71 137 15 1434 198 16 0 chr4 56013606 56013914 -146314433 - L1MB7 LINE L1 -12 6172 5860 473 128 0 0 chr4 56013924 56014010 -146314337 - L1PB4 LINE L1 -3 6153 6068 4356 250 42 46 chr4 56014042 56016386 -146311961 - L1MB7 LINE L1 -314 5870 3540 306 280 125 6 chr4 56016402 56016570 -146311777 - LTR16A LTR ERVL -4 446 259 288 313 62 6 chr4 56016810 56016970 -146311377 - L1MEc LINE L1 -6194 202 34 21 0 0 0 chr4 56017209 56017230 -146311117 + AT_rich Low_complexity Low_complexity 1 21 0 1829 182 19 30 chr4 56017412 56017781 -146310566 - MLT1A1 LTR MaLR 0 365 1 514 200 0 0 chr4 56018975 56019065 -146309282 - Tigger7 DNA MER2_type -1 2486 2397 559 301 90 0 chr4 56019397 56019612 -146308735 - MIR SINE MIR 0 262 31 321 292 54 23 chr4 56019864 56019994 -146308353 + L1ME LINE L1 58 191 -5879 29 0 0 0 chr4 56019994 56020023 -146308324 + AT_rich Low_complexity Low_complexity 1 29 0 629 156 64 9 chr4 56020023 56020132 -146308215 - FLAM_C SINE Alu -24 119 5 318 297 74 20 chr4 56020588 56020736 -146307611 + L1ME LINE L1 320 475 -5595 897 282 19 39 chr4 56020785 56021327 -146307020 + L1ME LINE L1 448 978 -5105 1531 283 44 8 chr4 56021348 56021967 -146306380 + L1ME LINE L1 2889 3529 -2551 201 237 0 0 chr4 56022019 56022057 -146306290 + polypurine Low_complexity Low_complexity 3 40 0 627 216 7 8 chr4 56022059 56022241 -146306106 + L1M4 LINE L1 4648 4828 -1318 472 280 13 7 chr4 56022247 56022397 -146305950 + L1ME LINE L1 3652 3802 -2278 264 304 13 0 chr4 56022420 56022499 -146305848 - L2 LINE L2 0 3313 3234 7177 53 0 0 chr4 56022586 56023613 -146304734 - L1PA5 LINE L1 -8 6146 5118 744 178 0 20 chr4 56023613 56023625 -146304722 - L1P5 LINE L1 -661 5493 5482 616 220 110 107 chr4 56023625 56023925 -146304422 - AluJo SINE Alu -1 301 1 744 178 0 20 chr4 56023925 56024096 -146304251 - L1P5 LINE L1 -672 5482 5317 6781 62 5 43 chr4 56024130 56025122 -146303225 - SVA Other Other 0 1386 433 29 0 0 0 chr4 56025463 56025492 -146302855 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 56025703 56025725 -146302622 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr4 56025834 56025873 -146302474 + (T)n Simple_repeat Simple_repeat 1 39 0 13501 134 9 24 chr4 56025873 56026138 -146302209 - L1P LINE L1 -3825 2321 2054 2296 104 7 0 chr4 56026138 56026447 -146301900 - AluY SINE Alu 0 311 1 13501 134 9 24 chr4 56026447 56028526 -146299821 - L1P LINE L1 -4092 2054 11 1450 157 93 19 chr4 56028557 56028724 -146299623 - AluJo SINE Alu -4 308 112 198 0 0 0 chr4 56028724 56028746 -146299601 + (TTTTA)n Simple_repeat Simple_repeat 1 22 0 1450 157 93 19 chr4 56028746 56028846 -146299501 - AluJo SINE Alu -200 112 21 180 0 0 0 chr4 56028865 56028885 -146299462 + (A)n Simple_repeat Simple_repeat 1 20 0 261 221 191 0 chr4 56028977 56029045 -146299302 - MIR SINE MIR -65 197 117 230 282 24 35 chr4 56029101 56029186 -146299161 - MIR SINE MIR -133 129 46 246 313 31 0 chr4 56029393 56029489 -146298858 + MER5A DNA MER1_type 14 112 -77 191 62 31 31 chr4 56029481 56029513 -146298834 - MER5A DNA MER1_type -114 75 44 * 328 283 47 19 chr4 56030234 56030340 -146298007 - MIR3 SINE MIR -17 191 83 38 22 0 0 chr4 56031201 56031246 -146297101 + AT_rich Low_complexity Low_complexity 1 45 0 816 137 8 0 chr4 56031252 56031369 -146296978 - FLAM_C SINE Alu -15 118 1 2192 217 54 104 chr4 56031591 56032003 -146296344 - L1ME3 LINE L1 -50 6112 5681 1907 132 30 46 chr4 56032003 56032306 -146296041 + AluSx SINE Alu 1 298 -14 2192 217 54 104 chr4 56032306 56032793 -146295554 - L1ME3 LINE L1 -481 5681 5315 998 172 4 38 chr4 56032793 56033031 -146295316 - L1MA4 LINE L1 -1 6299 6070 2192 217 54 104 chr4 56033031 56033504 -146294843 - L1ME3 LINE L1 -847 5315 4820 1940 101 109 0 chr4 56033870 56034146 -146294201 + AluSg SINE Alu 1 306 -4 398 82 0 14 chr4 56034485 56034539 -146293808 - THE1B LTR MaLR 0 364 306 9687 31 1 0 chr4 56034539 56036467 -146291880 + L1PA3 LINE L1 4226 6155 0 2271 101 0 12 chr4 56036497 56036824 -146291523 - THE1B LTR MaLR -41 323 1 745 192 0 0 chr4 56037064 56037189 -146291158 + FLAM_C SINE Alu 1 125 -18 21754 71 18 8 chr4 56037292 56041473 -146286874 + L1PA6 LINE L1 2116 6154 0 573 115 0 0 chr4 56041473 56041560 -146286787 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 1747 168 31 49 chr4 56041709 56042096 -146286251 + MLT1B LTR MaLR 1 380 -10 24 32 0 0 chr4 56042206 56042237 -146286110 + AT_rich Low_complexity Low_complexity 1 31 0 1624 185 174 39 chr4 56042455 56042892 -146285455 + MLT1D LTR MaLR 2 497 -8 180 77 0 0 chr4 56042974 56043000 -146285347 + (TTTTTG)n Simple_repeat Simple_repeat 1 26 0 271 333 31 16 chr4 56043371 56043500 -146284847 + MIR SINE MIR 132 262 0 586 315 8 58 chr4 56044055 56044312 -146284035 + MIR SINE MIR 16 259 -3 405 333 162 41 chr4 56044317 56044854 -146283493 + L2 LINE L2 2033 2634 -680 2095 114 4 0 chr4 56045390 56045702 -146282645 - AluSp SINE Alu 0 313 1 6640 86 4 4 chr4 56046384 56048202 -146280145 + L1PA11 LINE L1 4347 6165 -9 512 184 28 22 chr4 56048204 56048383 -146279964 + (TA)n Simple_repeat Simple_repeat 1 180 0 471 223 69 27 chr4 56048712 56048900 -146279447 + MLT1J2 LTR MaLR 6 201 -249 413 234 81 86 chr4 56048901 56049110 -146279237 + MLT1J1 LTR MaLR 239 446 0 209 311 0 0 chr4 56050428 56050502 -146277845 + GA-rich Low_complexity Low_complexity 4 77 0 35662 32 12 1 chr4 56051322 56057344 -146271003 + L1HS LINE L1 3 6155 0 1632 171 11 14 chr4 56057492 56057779 -146270568 + AluJo SINE Alu 1 286 -26 424 81 27 0 chr4 56057879 56057953 -146270394 + (TC)n Simple_repeat Simple_repeat 2 77 0 783 155 78 28 chr4 56057956 56058098 -146270249 - FRAM SINE Alu -27 149 1 257 298 12 24 chr4 56058658 56058742 -146269605 - MIR3 SINE MIR -5 203 121 1124 192 11 49 chr4 56058909 56059175 -146269172 - MER33 DNA MER1_type -68 256 1 2279 115 3 0 chr4 56060329 56060641 -146267706 + AluSq SINE Alu 1 313 0 1025 153 25 0 chr4 56060656 56060813 -146267534 + AluSg/x SINE Alu 120 280 -32 430 247 58 72 chr4 56060846 56060869 -146267478 - MIR SINE MIR -42 220 198 2661 169 33 7 chr4 56060869 56061324 -146267023 - MLT1C LTR MaLR 0 467 1 430 247 58 72 chr4 56061324 56061443 -146266904 - MIR SINE MIR -64 198 80 2553 117 31 14 chr4 56061443 56061801 -146266546 - THE1B LTR MaLR 0 364 1 430 247 58 72 chr4 56061801 56061880 -146266467 - MIR SINE MIR -182 80 1 424 333 30 6 chr4 56061880 56062027 -146266320 - MIR SINE MIR -106 156 6 302 217 33 0 chr4 56062907 56062967 -146265380 + L2 LINE L2 3200 3261 -52 331 231 83 9 chr4 56062979 56063087 -146265260 - L1MC4a LINE L1 -1840 5968 5853 513 218 113 8 chr4 56063964 56064097 -146264250 + L2 LINE L2 3167 3313 0 2898 176 24 0 chr4 56064219 56064679 -146263668 - MER70A LTR ERVL -1 471 1 2326 214 207 16 chr4 56064957 56065633 -146262714 + MER21B LTR ERV1 5 809 -54 2097 233 39 2 chr4 56065647 56066115 -146262232 - MLT1F LTR MaLR -54 488 4 339 210 0 0 chr4 56066850 56066912 -146261435 - L2 LINE L2 -1 3312 3251 390 281 83 97 chr4 56066925 56067203 -146261144 + L2 LINE L2 3008 3281 -32 260 277 128 0 chr4 56067203 56067297 -146261050 + MER21B LTR ERV1 704 809 -54 377 188 0 0 chr4 56067316 56067385 -146260962 - MLT1F LTR MaLR -54 488 420 249 33 0 0 chr4 56067491 56067521 -146260826 + (TC)n Simple_repeat Simple_repeat 1 30 0 739 208 86 25 chr4 56068500 56068560 -146259787 - MER3 DNA MER1_type 0 209 154 4085 67 6 0 chr4 56068560 56069053 -146259294 - L1PA5 LINE L1 -8 6146 5651 739 208 86 25 chr4 56069053 56069189 -146259158 - MER3 DNA MER1_type -55 154 1 693 256 93 93 chr4 56069553 56070032 -146258315 + MLT1G1 LTR MaLR 1 442 -148 853 267 89 49 chr4 56070161 56070566 -146257781 - MLT1L LTR MaLR 0 615 195 242 28 0 28 chr4 56070923 56070959 -146257388 + (CA)n Simple_repeat Simple_repeat 2 36 0 2428 94 0 0 chr4 56071063 56071371 -146256976 - AluSc SINE Alu -1 308 1 1580 199 101 18 chr4 56071458 56071795 -146256552 - MLT1A1 LTR MaLR 0 365 1 1016 96 0 0 chr4 56072879 56073015 -146255332 + MLT2D LTR ERVL 3 138 -276 1743 123 68 89 chr4 56073015 56073041 -146255306 - THE1C LTR MaLR 0 375 350 384 177 25 13 chr4 56073041 56073120 -146255227 + MADE1 DNA Mariner 1 80 0 1743 123 68 89 chr4 56073120 56073476 -146254871 - THE1C LTR MaLR -25 350 1 967 174 43 110 chr4 56073476 56073774 -146254573 + MLT2D LTR ERVL 134 411 -3 372 103 0 0 chr4 56073774 56073832 -146254515 + (CA)n Simple_repeat Simple_repeat 2 59 0 1078 249 35 57 chr4 56074028 56074429 -146253918 + LTR16A LTR ERVL 56 447 -3 2346 90 7 0 chr4 56074639 56074938 -146253409 - AluSq SINE Alu -12 301 1 244 122 24 0 chr4 56075174 56075215 -146253132 + MADE1 DNA Mariner 1 42 -38 331 276 224 19 chr4 56075241 56075505 -146252842 + L2 LINE L2 2951 3268 -4 338 339 17 76 chr4 56075571 56075807 -146252540 - L3 LINE CR1 -154 1423 1202 1180 185 189 0 chr4 56076140 56076415 -146251932 + AluJo SINE Alu 1 223 -330 975 121 11 22 chr4 56076415 56076597 -146251750 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1180 185 189 0 chr4 56076597 56076645 -146251702 + AluJo SINE Alu 223 553 0 482 285 53 33 chr4 56076652 56076803 -146251544 + L2 LINE L2 3103 3256 -16 2257 102 0 10 chr4 56077690 56077993 -146250354 - AluSq SINE Alu -13 300 1 227 253 95 70 chr4 56078062 56078220 -146250127 - HAL1 LINE L1 -1728 779 618 356 290 0 40 chr4 56078905 56079005 -146249342 - L2 LINE L2 -30 3283 3188 236 125 62 21 chr4 56079488 56079536 -146248811 + LTR24B LTR ERV1 70 119 -457 * 1239 194 29 56 chr4 56079531 56079871 -146248476 + LTR24B LTR ERV1 244 574 -2 407 291 56 114 chr4 56080125 56080678 -146247669 + MLT1K LTR MaLR 66 586 -2 285 29 0 0 chr4 56081829 56081863 -146246484 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 274 216 97 3 chr4 56081887 56081983 -146246364 - MLT1J1 LTR MaLR -16 415 316 807 255 42 19 chr4 56081998 56082257 -146246090 - MLT1J2 LTR MaLR -184 266 2 366 238 20 20 chr4 56082362 56082463 -146245884 - MIR SINE MIR -46 216 116 297 323 10 0 chr4 56082528 56082627 -146245720 + MIR SINE MIR 2 101 -161 342 259 48 88 chr4 56082785 56082932 -146245415 - MIR SINE MIR -70 192 52 1023 201 170 18 chr4 56082960 56083243 -146245104 - LTR16C LTR ERVL -2 489 164 260 211 122 44 chr4 56083578 56083668 -146244679 + MIR SINE MIR 89 185 -77 366 255 0 64 chr4 56083677 56083771 -146244576 + L2 LINE L2 3149 3236 -36 207 161 0 0 chr4 56083795 56083826 -146244521 + polypurine Low_complexity Low_complexity 4 34 0 196 271 0 0 chr4 56083858 56083906 -146244441 + L2 LINE L2 3213 3260 -12 216 0 0 0 chr4 56084424 56084448 -146243899 + (T)n Simple_repeat Simple_repeat 1 24 0 448 163 50 0 chr4 56084507 56084587 -146243760 - L2 LINE L2 0 3272 3189 2130 195 11 0 chr4 56084779 56085138 -146243209 - MLT1A1 LTR MaLR -2 363 1 209 235 176 0 chr4 56085308 56085376 -146242971 - MIR SINE MIR -85 123 44 286 242 141 10 chr4 56085408 56085507 -146242840 - L2 LINE L2 -2 3311 3200 * 459 328 150 11 chr4 56085483 56085770 -146242577 - L2 LINE L2 -508 2806 2480 1260 198 82 80 chr4 56085789 56086153 -146242194 + MLT1A1 LTR MaLR 1 365 0 1993 199 32 44 chr4 56086453 56086926 -146241421 - MLT1C LTR MaLR 0 467 1 922 211 51 34 chr4 56087434 56087671 -146240676 - MIR SINE MIR -16 246 6 2001 94 66 25 chr4 56087876 56088194 -146240153 + L1MA3 LINE L1 5966 6296 -9 555 132 0 0 chr4 56088361 56088452 -146239895 + (GGGGA)n Simple_repeat Simple_repeat 5 95 0 1085 149 0 6 chr4 56088505 56088666 -146239681 + AluJb SINE Alu 129 288 -24 267 261 127 8 chr4 56088745 56088879 -146239468 + L1ME3 LINE L1 5931 6080 -82 338 326 76 29 chr4 56089016 56089188 -146239159 + HAL1 LINE L1 2326 2505 -2 1491 175 10 23 chr4 56089201 56089331 -146239016 + L1MD3 LINE L1 7690 7820 -175 2164 134 27 48 chr4 56089331 56089703 -146238644 - THE1B LTR MaLR 0 364 1 1491 175 10 23 chr4 56089703 56089875 -146238472 + L1MD3 LINE L1 7820 7988 -7 687 144 63 0 chr4 56089880 56089991 -146238356 + MLT1A1 LTR MaLR 171 288 -77 21 82 0 0 chr4 56090227 56090276 -146238071 + AT_rich Low_complexity Low_complexity 1 49 0 273 57 0 0 chr4 56090314 56090349 -146237998 + (CA)n Simple_repeat Simple_repeat 2 36 0 200 299 23 23 chr4 56090611 56090698 -146237649 - L2 LINE L2 -350 2922 2836 1857 212 64 41 chr4 56090841 56091407 -146236940 + L1MC4 LINE L1 7464 8042 0 211 281 34 34 chr4 56091452 56091541 -146236806 - L2 LINE L2 -706 2608 2520 1815 151 26 30 chr4 56092989 56093293 -146235054 - AluJb SINE Alu -9 303 1 2099 119 0 3 chr4 56093360 56093646 -146234701 - AluSx SINE Alu -22 290 6 27 49 0 0 chr4 56093724 56093765 -146234582 + AT_rich Low_complexity Low_complexity 1 41 0 766 221 121 43 chr4 56095118 56095349 -146232998 - MIR SINE MIR -8 254 6 400 261 58 51 chr4 56095491 56095629 -146232718 + MIR SINE MIR 113 251 -11 4946 155 55 15 chr4 56096768 56096932 -146231415 + L1MA9 LINE L1 5360 5516 -796 1537 218 99 11 chr4 56096932 56097295 -146231052 + MSTD LTR MaLR 1 395 -1 4946 155 55 15 chr4 56097295 56097554 -146230793 + L1MA9 LINE L1 5516 5763 -549 408 88 0 0 chr4 56097554 56097611 -146230736 + (TA)n Simple_repeat Simple_repeat 2 58 0 4946 155 55 15 chr4 56097611 56098103 -146230244 + L1MA9 LINE L1 5763 6312 0 211 287 46 23 chr4 56098518 56098605 -146229742 + MIR3 SINE MIR 111 199 -9 356 200 87 52 chr4 56099191 56099306 -146229041 + L1MC5 LINE L1 7811 7929 -32 1967 141 0 7 chr4 56099530 56099827 -146228520 - AluJb SINE Alu -17 295 1 462 114 0 14 chr4 56100332 56100402 -146227945 + LTR24B LTR ERV1 9 77 -499 635 241 96 47 chr4 56100457 56100799 -146227548 + LTR24 LTR ERV1 161 466 -1 1664 231 105 9 chr4 56101875 56102428 -146225919 - MER90 LTR ERV1 -8 606 1 728 141 63 14 chr4 56103220 56103362 -146224985 + MER4C LTR ERV1 1 149 -316 340 189 221 74 chr4 56103362 56103484 -146224863 + MER4A LTR ERV1 238 377 -220 * 1261 149 27 131 chr4 56103452 56103788 -146224559 + MER4C LTR ERV1 165 465 0 271 303 73 9 chr4 56105102 56105211 -146223136 + L2 LINE L2 3179 3294 -19 2259 116 119 38 chr4 56105320 56105496 -146222851 + MSTA LTR MaLR 1 161 -267 1973 140 38 0 chr4 56105496 56105789 -146222558 + AluSx SINE Alu 1 304 -8 2259 116 119 38 chr4 56105789 56106008 -146222339 + MSTA LTR MaLR 161 428 0 23 86 0 0 chr4 56111177 56111235 -146217112 + AT_rich Low_complexity Low_complexity 1 58 0 185 369 87 19 chr4 56111785 56111888 -146216459 - L2 LINE L2 -27 3245 3136 715 245 74 93 chr4 56111906 56112504 -146215843 - L2 LINE L2 -10 3303 2695 580 273 117 82 chr4 56112733 56113187 -146215160 + L2 LINE L2 2808 3277 -36 225 229 217 38 chr4 56114454 56114611 -146213736 - L1ME LINE L1 -201 5920 5736 462 254 33 8 chr4 56115473 56115595 -146212752 + MIR3 SINE MIR 34 158 -50 473 240 87 7 chr4 56115653 56115803 -146212544 - MER103 DNA DNA -2 164 3 2230 131 0 0 chr4 56116627 56116932 -146211415 - AluSx SINE Alu -7 305 1 198 274 48 0 chr4 56117062 56117124 -146211223 - MIR SINE MIR -16 246 182 342 175 18 0 chr4 56117164 56117221 -146211126 + L2 LINE L2 3215 3272 0 200 299 206 9 chr4 56118525 56118632 -146209715 - L2 LINE L2 0 3313 3186 486 269 283 16 chr4 56118740 56119108 -146209239 + L2 LINE L2 2848 3313 0 2638 101 28 8 chr4 56119261 56119617 -146208730 - THE1B LTR MaLR -1 363 1 2970 138 14 9 chr4 56120501 56120927 -146207420 + MSTA LTR MaLR 1 428 0 684 100 0 0 chr4 56120928 56121018 -146207329 + HY1 scRNA scRNA 1 90 -22 231 114 0 0 chr4 56121018 56121053 -146207294 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 643 160 10 146 chr4 56121513 56121719 -146206628 + MER5B DNA MER1_type 1 178 0 2753 23 3 0 chr4 56122862 56123172 -146205175 - AluY SINE Alu 0 311 1 2113 115 3 14 chr4 56124553 56124848 -146203499 + AluSx SINE Alu 1 292 -20 726 216 141 22 chr4 56124886 56125071 -146203276 + MIR SINE MIR 43 249 -13 897 241 122 66 chr4 56125297 56125815 -146202532 + MLT1H LTR MaLR 3 549 0 2739 252 105 42 chr4 56125910 56126390 -146201957 + L1ME4a LINE L1 29 477 -5603 2301 116 0 0 chr4 56126390 56126700 -146201647 + AluSg SINE Alu 1 310 0 2739 252 105 42 chr4 56126700 56128477 -146199870 + L1ME4a LINE L1 477 2422 -3658 1349 216 93 25 chr4 56128477 56128842 -146199505 + L1MB7 LINE L1 5795 6184 0 578 269 61 19 chr4 56128847 56129059 -146199288 + L1ME4a LINE L1 2409 2629 -3451 1143 219 33 0 chr4 56129062 56129272 -146199075 + MER20 DNA MER1_type 2 218 -1 290 132 19 0 chr4 56129272 56129325 -146199022 + CT-rich Low_complexity Low_complexity 1 54 0 2164 126 0 0 chr4 56129325 56129618 -146198729 - AluSx SINE Alu -16 296 4 1454 187 37 9 chr4 56129632 56129953 -146198394 + L1ME4a LINE L1 2623 2952 -3128 281 283 76 22 chr4 56129972 56130064 -146198283 + L2 LINE L2 3215 3311 -2 813 184 17 40 chr4 56131047 56131173 -146197174 + AluJo SINE Alu 1 123 -189 1943 135 0 4 chr4 56131173 56131447 -146196900 + AluSx SINE Alu 19 291 -21 813 184 17 40 chr4 56131447 56131494 -146196853 + AluJo SINE Alu 123 170 -142 180 0 0 0 chr4 56131521 56131541 -146196806 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 183 80 0 0 chr4 56132249 56132274 -146196073 + (A)n Simple_repeat Simple_repeat 1 25 0 625 276 29 0 chr4 56132624 56132798 -146195549 + L3 LINE CR1 1375 1553 -24 192 40 0 0 chr4 56133158 56133183 -146195164 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1291 253 74 17 chr4 56133543 56134017 -146194330 + L1ME3A LINE L1 5456 5956 -214 408 232 156 33 chr4 56134046 56134322 -146194025 + L1ME4a LINE L1 3479 3788 -2292 2080 134 0 0 chr4 56134333 56134625 -146193722 + AluSx SINE Alu 12 303 -9 804 281 102 16 chr4 56134646 56135009 -146193338 + L1ME4a LINE L1 5492 5885 -219 648 332 186 31 chr4 56135450 56136172 -146192175 - L2 LINE L2 0 3313 2461 377 279 158 23 chr4 56136367 56136592 -146191755 + L1MDa LINE L1 2244 2524 -4046 2147 120 19 7 chr4 56136592 56136900 -146191447 + AluSx SINE Alu 1 312 0 377 279 158 23 chr4 56136900 56136921 -146191426 + L1MDa LINE L1 2524 2541 -4029 322 216 118 20 chr4 56136942 56137044 -146191303 + L1MC5 LINE L1 7376 7487 -474 245 224 79 13 chr4 56137383 56137459 -146190888 + L1ME4a LINE L1 5943 6023 -32 1717 199 59 14 chr4 56137593 56137950 -146190397 + MLT1A2 LTR MaLR 2 374 0 977 247 60 4 chr4 56138100 56138335 -146190012 - MIR SINE MIR 0 262 15 2136 107 7 14 chr4 56139279 56139570 -146188777 - AluSc SINE Alu -20 289 1 725 283 28 28 chr4 56142647 56142898 -146185449 - MIR SINE MIR -6 256 6 2039 114 62 0 chr4 56143419 56143709 -146184638 + AluSx SINE Alu 1 308 -4 459 169 35 92 chr4 56144477 56144619 -146183728 - L2 LINE L2 0 3313 3180 2030 133 4 0 chr4 56144670 56144948 -146183399 + AluSx SINE Alu 1 279 -33 238 184 26 26 chr4 56144949 56145025 -146183322 + GA-rich Low_complexity Low_complexity 1 76 0 550 289 45 0 chr4 56145025 56145181 -146183166 - MIR SINE MIR -96 166 4 1707 143 42 29 chr4 56145485 56145793 -146182554 + AluJb SINE Alu 1 312 0 1064 55 24 18 chr4 56145819 56145984 -146182363 + (GAAA)n Simple_repeat Simple_repeat 4 169 0 273 109 0 0 chr4 56146820 56146866 -146181481 + (CACAG)n Simple_repeat Simple_repeat 1 46 0 202 302 132 44 chr4 56146882 56147041 -146181306 + L2 LINE L2 341 513 -2801 792 145 0 0 chr4 56147050 56147174 -146181173 - AluSc SINE Alu 0 309 186 2336 104 0 0 chr4 56147174 56147472 -146180875 + AluSq SINE Alu 1 298 -15 1630 82 0 0 chr4 56147572 56147768 -146180579 - AluSq SINE Alu -117 196 1 341 293 152 71 chr4 56147871 56148753 -146179594 + L2 LINE L2 660 1612 -1702 295 211 167 58 chr4 56148852 56149008 -146179339 + L1MC5 LINE L1 7723 7895 -66 1952 185 66 62 chr4 56149022 56149469 -146178878 + MLT1D LTR MaLR 6 457 -48 2407 99 0 0 chr4 56149469 56149773 -146178574 + AluSg SINE Alu 1 304 -6 1952 185 66 62 chr4 56149773 56149823 -146178524 + MLT1D LTR MaLR 457 505 0 1888 156 7 7 chr4 56149852 56150153 -146178194 - AluJb SINE Alu -11 301 1 731 299 149 16 chr4 56150346 56150844 -146177503 + L2 LINE L2 2192 2755 -559 2711 166 44 34 chr4 56151057 56151557 -146176790 + MLT1D LTR MaLR 1 505 0 22 0 0 0 chr4 56151618 56151640 -146176707 + AT_rich Low_complexity Low_complexity 1 22 0 201 150 33 17 chr4 56151661 56151721 -146176626 + (TA)n Simple_repeat Simple_repeat 2 62 0 242 315 28 28 chr4 56151725 56151833 -146176514 + L2 LINE L2 3165 3272 0 1418 267 41 28 chr4 56152321 56152748 -146175599 - MLT1J LTR MaLR -35 476 41 1617 180 0 27 chr4 56152748 56153048 -146175299 - AluJb SINE Alu -20 292 1 1418 267 41 28 chr4 56153048 56153081 -146175266 - MLT1J LTR MaLR -470 41 10 256 250 158 54 chr4 56153084 56153268 -146175079 + L1MC/D LINE L1 5697 5899 -1909 289 177 89 13 chr4 56153301 56153380 -146174967 - L2 LINE L2 -1 3271 3187 26 0 0 0 chr4 56153544 56153570 -146174777 + AT_rich Low_complexity Low_complexity 1 26 0 2019 127 3 20 chr4 56153575 56153867 -146174480 + AluSp SINE Alu 14 300 -13 186 121 0 30 chr4 56154006 56154039 -146174308 + MIR SINE MIR 99 130 -78 258 253 108 0 chr4 56154722 56154805 -146173542 - MIR3 SINE MIR -29 179 88 770 281 49 9 chr4 56155286 56155510 -146172837 - MIR SINE MIR -28 234 2 387 268 123 76 chr4 56156195 56156384 -146171963 + L2 LINE L2 2956 3166 -106 911 255 23 5 chr4 56156384 56156600 -146171747 + MER58A DNA MER1_type 5 224 0 387 268 123 76 chr4 56156600 56156712 -146171635 + L2 LINE L2 3166 3271 -1 543 259 99 10 chr4 56156739 56156940 -146171407 - MIR SINE MIR -30 232 14 242 197 158 0 chr4 56157204 56157280 -146171067 - MIR SINE MIR -110 152 65 1908 125 86 13 chr4 56157449 56157762 -146170585 + MER1B DNA MER1_type 1 336 -1 189 0 0 0 chr4 56157782 56157803 -146170544 + (A)n Simple_repeat Simple_repeat 1 21 0 2245 103 0 3 chr4 56157820 56158120 -146170227 + AluSg SINE Alu 1 299 -11 1215 127 0 0 chr4 56158120 56158293 -146170054 + AluSg/x SINE Alu 132 304 -6 2032 139 128 8 chr4 56158776 56159158 -146169189 + MSTA LTR MaLR 1 428 0 721 213 111 13 chr4 56159529 56159764 -146168583 + MER5C DNA MER1_type 61 318 -6 1069 242 170 32 chr4 56159807 56160208 -146168139 + L1MC4a LINE L1 5370 5825 -1983 211 276 102 20 chr4 56160863 56160961 -146167386 - MIR SINE MIR -87 121 16 297 208 99 20 chr4 56161512 56161613 -146166734 - MER113 DNA MER1_type? -412 109 1 21 0 0 0 chr4 56161726 56161747 -146166600 + AT_rich Low_complexity Low_complexity 1 21 0 393 282 161 0 chr4 56162550 56162699 -146165648 + MER5A DNA MER1_type 9 181 -8 463 189 0 83 chr4 56162750 56162882 -146165465 - L2 LINE L2 -1 3312 3192 221 127 55 55 chr4 56162887 56162942 -146165405 - MER5B DNA MER1_type -2 176 122 544 322 50 18 chr4 56163056 56163398 -146164949 + L1ME3A LINE L1 5552 5904 -266 24 0 0 0 chr4 56163725 56163749 -146164598 + AT_rich Low_complexity Low_complexity 1 24 0 198 250 19 0 chr4 56163750 56163802 -146164545 - MER5B DNA MER1_type -125 53 1 2264 100 13 0 chr4 56163861 56164162 -146164185 + AluSc SINE Alu 1 305 -4 291 273 0 30 chr4 56164361 56164460 -146163887 + MER5A DNA MER1_type 50 145 -44 871 254 64 54 chr4 56165167 56165671 -146162676 + L1ME3A LINE L1 5374 5886 -284 251 309 41 24 chr4 56165793 56165916 -146162431 + L1ME3A LINE L1 5969 6093 -77 240 233 67 0 chr4 56165884 56165944 -146162403 + L1MC4 LINE L1 7964 8027 -15 * 2163 115 37 0 chr4 56166270 56166566 -146161781 + AluSq SINE Alu 1 307 -6 21 0 0 0 chr4 56167419 56167440 -146160907 + AT_rich Low_complexity Low_complexity 1 21 0 785 178 15 0 chr4 56167603 56167738 -146160609 - FLAM_C SINE Alu -5 138 2 263 272 73 88 chr4 56169714 56169805 -146158542 - MIR SINE MIR -108 154 64 1850 160 10 10 chr4 56169805 56170112 -146158235 + AluJb SINE Alu 2 308 -4 263 272 73 88 chr4 56170112 56170156 -146158191 - MIR SINE MIR -198 64 21 208 147 0 0 chr4 56171546 56171580 -146156767 - MIR SINE MIR -113 149 116 25 31 0 0 chr4 56172041 56172073 -146156274 + GC_rich Low_complexity Low_complexity 1 32 0 313 239 30 15 chr4 56172321 56172455 -146155892 + (CGGGG)n Simple_repeat Simple_repeat 2 137 0 21 0 0 0 chr4 56172504 56172525 -146155822 + GC_rich Low_complexity Low_complexity 1 21 0 654 151 0 126 chr4 56173701 56173860 -146154487 - FLAM_C SINE Alu 0 143 5 226 266 35 18 chr4 56173864 56173977 -146154370 - MIR SINE MIR -56 206 92 1877 173 81 66 chr4 56174762 56175184 -146153163 + MSTA LTR MaLR 1 428 0 8621 177 6 121 chr4 56175186 56176970 -146151377 + MSTA-int LTR MaLR 3 1651 0 2337 161 46 19 chr4 56176970 56177387 -146150960 + MSTA LTR MaLR 1 428 0 438 222 24 0 chr4 56177424 56177529 -146150818 + MER5A DNA MER1_type 4 111 -78 1423 266 144 12 chr4 56177579 56178087 -146150260 + MLT1K LTR MaLR 14 588 0 2167 196 57 2 chr4 56178163 56178567 -146149780 - MSTB LTR MaLR 0 426 1 701 230 191 0 chr4 56178925 56179134 -146149213 + MIR SINE MIR 14 262 0 492 158 0 0 chr4 56179236 56179312 -146149035 + AluJo SINE Alu 2 77 -235 574 190 19 13 chr4 56179321 56179479 -146148868 + GA-rich Low_complexity Low_complexity 1 159 0 287 235 0 0 chr4 56179479 56179530 -146148817 + polypurine Low_complexity Low_complexity 1 51 0 271 267 0 0 chr4 56179870 56179930 -146148417 - L2 LINE L2 -3 3310 3251 669 208 0 16 chr4 56180150 56180275 -146148072 + FLAM_A SINE Alu 1 123 -10 443 324 61 98 chr4 56180482 56181077 -146147270 - L2 LINE L2 -675 2639 2074 1851 145 0 34 chr4 56181077 56181374 -146146973 + AluJo SINE Alu 1 287 -25 443 324 61 98 chr4 56181374 56181503 -146146844 - L2 LINE L2 -1240 2074 1942 187 240 20 0 chr4 56181549 56181599 -146146748 - MIR SINE MIR -72 190 140 1424 161 4 37 chr4 56181603 56181845 -146146502 + AluJo SINE Alu 57 290 -22 207 255 20 0 chr4 56182276 56182327 -146146020 + L2 LINE L2 2999 3050 -222 284 235 118 0 chr4 56182974 56183059 -146145288 + L2 LINE L2 3214 3308 -5 2459 147 71 0 chr4 56183114 56183535 -146144812 - LTR47A LTR ERVL -1 451 1 777 218 48 74 chr4 56184491 56184762 -146143585 - L1ME3A LINE L1 0 6170 5907 1298 186 25 25 chr4 56184770 56184858 -146143489 + AluSx SINE Alu 22 109 -203 216 0 0 0 chr4 56184858 56184882 -146143465 + (TA)n Simple_repeat Simple_repeat 2 25 0 2044 109 33 0 chr4 56184882 56185158 -146143189 + AluSx SINE Alu 2 286 -26 1298 186 25 25 chr4 56185158 56185172 -146143175 + AluSx SINE Alu 108 121 -191 703 182 15 15 chr4 56185172 56185304 -146143043 + FLAM_C SINE Alu 1 132 -1 9169 48 1 2 chr4 56185305 56186377 -146141970 - MER11C LTR ERVK 0 1071 1 1298 186 25 25 chr4 56186377 56186555 -146141792 + AluSx SINE Alu 120 306 -6 1484 219 39 3 chr4 56186556 56186889 -146141458 - L1ME3A LINE L1 -249 5921 5577 2364 97 0 0 chr4 56186994 56187284 -146141063 + AluSg SINE Alu 1 290 -20 1352 167 41 12 chr4 56187319 56187564 -146140783 + MLT1A1 LTR MaLR 102 353 -12 830 211 211 25 chr4 56187577 56187899 -146140448 + L2 LINE L2 2200 2581 -733 264 30 0 0 chr4 56187919 56187952 -146140395 + (TG)n Simple_repeat Simple_repeat 2 34 0 724 192 64 13 chr4 56187952 56188108 -146140239 - AluJo SINE Alu -27 285 122 633 231 0 14 chr4 56188123 56188270 -146140077 + L2 LINE L2 3168 3312 -1 252 100 0 0 chr4 56188306 56188346 -146140001 + (ATG)n Simple_repeat Simple_repeat 2 41 0 356 270 88 0 chr4 56188354 56188491 -146139856 - MIR SINE MIR -14 248 100 770 70 0 0 chr4 56188495 56188595 -146139752 + HY3 scRNA scRNA 2 101 0 205 258 30 15 chr4 56188623 56188689 -146139658 - MIR SINE MIR -148 114 48 620 244 207 57 chr4 56188713 56189171 -146139176 + L1ME4a LINE L1 5521 6047 -74 198 0 0 0 chr4 56189212 56189234 -146139113 + (TTA)n Simple_repeat Simple_repeat 1 22 0 1821 171 4 4 chr4 56189240 56189521 -146138826 - AluJo SINE Alu -31 281 1 2305 75 4 0 chr4 56189532 56189813 -146138534 - AluY SINE Alu -8 303 22 24 53 0 0 chr4 56189873 56189911 -146138436 + AT_rich Low_complexity Low_complexity 1 38 0 240 122 0 0 chr4 56190817 56190858 -146137489 + (CA)n Simple_repeat Simple_repeat 1 41 0 2311 105 0 0 chr4 56191614 56191910 -146136437 - AluSc SINE Alu -11 298 3 1792 154 13 27 chr4 56192114 56192413 -146135934 - AluJb SINE Alu -13 299 5 532 249 8 100 chr4 56193541 56193790 -146134557 + MIR SINE MIR 23 248 -14 2754 197 71 32 chr4 56194000 56194579 -146133768 + LTR23-int LTR ERV1 1178 1800 -3323 2229 118 7 0 chr4 56194579 56194875 -146133472 + AluSx SINE Alu 1 298 -14 2754 197 71 32 chr4 56194875 56195109 -146133238 + LTR23-int LTR ERV1 1800 2023 -3100 425 99 74 25 chr4 56195119 56195200 -146133147 + MER4B LTR ERV1 1 85 -525 2268 112 10 0 chr4 56195240 56195544 -146132803 + AluSx SINE Alu 3 309 -3 256 117 17 33 chr4 56195564 56195624 -146132723 + A-rich Low_complexity Low_complexity 3 61 0 2039 111 4 4 chr4 56195787 56196106 -146132241 + AluSc SINE Alu 1 319 0 247 263 85 42 chr4 56197072 56197190 -146131157 - L1ME4a LINE L1 -11 6110 5988 252 0 0 0 chr4 56197201 56197229 -146131118 + (CA)n Simple_repeat Simple_repeat 1 28 0 231 153 20 41 chr4 56197240 56197338 -146131009 + (TA)n Simple_repeat Simple_repeat 1 96 0 549 195 208 13 chr4 56197575 56197729 -146130618 - MER5A DNA MER1_type -2 187 4 812 194 29 0 chr4 56197781 56197956 -146130391 - FRAM SINE Alu -4 172 1 3003 214 16 22 chr4 56198060 56198746 -146129601 + LTR23-int LTR ERV1 4442 5123 0 1005 146 17 28 chr4 56198747 56198925 -146129422 + LTR23 LTR ERV1 1 176 -261 2084 114 0 7 chr4 56198925 56199230 -146129117 - AluSg SINE Alu 0 303 1 1072 110 0 0 chr4 56199230 56199366 -146128981 - AluSq/x SINE Alu -177 136 1 773 100 14 36 chr4 56199367 56199507 -146128840 + LTR23 LTR ERV1 167 303 -134 22 0 0 0 chr4 56199532 56199554 -146128793 + AT_rich Low_complexity Low_complexity 1 22 0 1499 161 40 25 chr4 56199567 56199841 -146128506 + AluJo SINE Alu 26 303 -9 707 143 4 11 chr4 56199842 56199982 -146128365 + LTR56 LTR ERV1 298 437 0 357 62 0 0 chr4 56199982 56200030 -146128317 + (CA)n Simple_repeat Simple_repeat 2 49 0 192 77 0 0 chr4 56200340 56200366 -146127981 + (T)n Simple_repeat Simple_repeat 1 26 0 1314 214 38 70 chr4 56200813 56200865 -146127482 + MER74A LTR ERVL 20 72 -486 2086 140 0 6 chr4 56200865 56201179 -146127168 + AluSx SINE Alu 1 312 0 1314 214 38 70 chr4 56201179 56201467 -146126880 + MER74A LTR ERVL 72 349 -209 2298 96 3 0 chr4 56201674 56201966 -146126381 + AluSp SINE Alu 1 293 -20 1242 170 0 46 chr4 56202769 56203010 -146125337 - AluJo SINE Alu -7 305 76 1889 226 18 38 chr4 56203127 56203631 -146124716 - L1ME LINE L1 -359 5811 5318 309 307 27 67 chr4 56203661 56203886 -146124461 - L1MC4 LINE L1 -1 8041 7826 1880 193 21 10 chr4 56203917 56204306 -146124041 - L1ME2 LINE L1 -10 6154 5762 789 198 5 40 chr4 56204315 56204517 -146123830 - L1MA10 LINE L1 -2 6332 6138 1030 136 24 0 chr4 56204517 56204683 -146123664 + L1PA16 LINE L1 5994 6166 0 773 187 0 7 chr4 56205186 56205325 -146123022 + FLAM_C SINE Alu 6 143 0 250 303 59 25 chr4 56205537 56205656 -146122691 + PABL_B-int LTR ERV1 5299 5421 -1701 726 158 58 0 chr4 56207377 56207497 -146120850 - MER3 DNA MER1_type -82 127 1 878 184 25 25 chr4 56208120 56208283 -146120064 + FRAM SINE Alu 1 159 -17 336 220 18 9 chr4 56208285 56208394 -146119953 + GA-rich Low_complexity Low_complexity 1 110 0 1209 144 11 0 chr4 56209255 56209436 -146118911 + AluSg/x SINE Alu 121 303 -7 221 285 192 46 chr4 56209451 56209602 -146118745 + L2 LINE L2 2804 2976 -296 525 251 155 16 chr4 56209693 56209880 -146118467 + MIR SINE MIR 7 219 -43 21 36 0 0 chr4 56210723 56210751 -146117596 + GC_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr4 56210853 56210893 -146117454 + GC_rich Low_complexity Low_complexity 1 40 0 735 213 236 69 chr4 56211925 56212358 -146115989 + LTR21A LTR ERV1 1 505 0 610 117 219 0 chr4 56212796 56212924 -146115423 + MSTA LTR MaLR 37 192 -236 499 161 10 3 chr4 56212929 56213128 -146115219 + AluJ SINE Alu 1 258 -54 963 98 275 0 chr4 56213212 56213405 -146114942 + MSTA LTR MaLR 183 428 0 362 261 13 70 chr4 56213502 56213659 -146114688 - L2 LINE L2 -299 3014 2867 263 139 0 23 chr4 56214257 56214300 -146114047 + U6 snRNA snRNA 1 42 -65 191 300 71 29 chr4 56214339 56214409 -146113938 - L2 LINE L2 -20 3293 3221 278 179 232 0 chr4 56214433 56214489 -146113858 - MER3 DNA MER1_type -104 105 37 327 192 205 0 chr4 56214753 56214831 -146113516 - MER3 DNA MER1_type -115 94 1 1175 206 227 8 chr4 56214898 56215295 -146113052 + MLT1D LTR MaLR 5 488 -17 198 0 0 0 chr4 56215412 56215434 -146112913 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 2275 55 4 0 chr4 56215438 56215712 -146112635 - AluY SINE Alu -36 275 1 25 0 0 0 chr4 56216228 56216253 -146112094 + AT_rich Low_complexity Low_complexity 1 25 0 1321 148 80 4 chr4 56216265 56216515 -146111832 + AluJo SINE Alu 21 289 -23 252 0 0 0 chr4 56217308 56217336 -146111011 + (TG)n Simple_repeat Simple_repeat 2 29 0 2537 74 0 0 chr4 56217354 56217663 -146110684 - AluY SINE Alu -1 310 2 1708 151 3 44 chr4 56218485 56218802 -146109545 - AluJo SINE Alu -8 304 1 2357 74 7 0 chr4 56219551 56219848 -146108499 + AluSx SINE Alu 1 299 -13 313 235 61 31 chr4 56221057 56221155 -146107192 - MIR SINE MIR -70 192 92 285 241 63 0 chr4 56221414 56221493 -146106854 - L1ME3A LINE L1 -7 6163 6080 420 269 45 0 chr4 56221593 56221749 -146106598 - MIR SINE MIR -31 231 69 370 246 0 0 chr4 56221896 56221965 -146106382 + L2 LINE L2 3223 3291 -22 306 206 27 14 chr4 56221990 56222063 -146106284 - L1MCa LINE L1 -4358 2068 1995 308 253 72 0 chr4 56222063 56222146 -146106201 - L1MC4 LINE L1 -1339 6703 6615 213 231 0 0 chr4 56222146 56222185 -146106162 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 234 218 62 88 chr4 56222185 56222257 -146106090 - L1MCa LINE L1 -4359 2067 1995 2212 95 14 0 chr4 56222257 56222541 -146105806 - AluSq SINE Alu -25 288 1 234 218 62 88 chr4 56222541 56222661 -146105686 - L1MCa LINE L1 -4431 1995 1880 311 308 58 36 chr4 56222778 56223036 -146105311 - L2 LINE L2 -263 3050 2702 2100 121 13 0 chr4 56223049 56223354 -146104993 - AluY SINE Alu -2 309 1 1013 94 0 7 chr4 56223354 56223492 -146104855 - AluSq/x SINE Alu -176 137 1 835 335 100 11 chr4 56223493 56223952 -146104395 - L2 LINE L2 -588 2726 2227 1067 222 30 52 chr4 56223953 56224297 -146104050 - MLT2D LTR ERVL -119 295 1 413 192 169 15 chr4 56224678 56224808 -146103539 - L1MD2 LINE L1 -10 6349 6200 343 243 48 29 chr4 56224810 56224913 -146103434 - L1MD2 LINE L1 -210 6149 6045 212 184 0 0 chr4 56225459 56225497 -146102850 + (TA)n Simple_repeat Simple_repeat 2 39 0 1700 186 42 109 chr4 56225510 56226016 -146102331 + L1MC4a LINE L1 6296 6767 -1041 25964 52 8 2 chr4 56226116 56229888 -146098459 + L1PA5 LINE L1 2093 5883 -271 828 209 44 103 chr4 56230123 56230443 -146097904 + AluJo SINE Alu 2 302 0 598 337 48 7 chr4 56231311 56231602 -146096745 + MER102b DNA MER1_type 38 340 -1 2236 120 0 0 chr4 56232453 56232753 -146095594 + AluSx SINE Alu 1 300 -12 286 271 94 0 chr4 56233047 56233143 -146095204 + Charlie8 DNA MER1_type 35 139 -2278 2143 118 26 7 chr4 56233337 56233643 -146094704 - AluSx SINE Alu 0 312 1 411 285 29 22 chr4 56233646 56233783 -146094564 - MER5A DNA MER1_type -51 138 1 590 186 103 171 chr4 56233823 56234163 -146094184 + L1MC5 LINE L1 6900 7167 -794 2159 131 7 0 chr4 56234163 56234469 -146093878 - AluSq SINE Alu -5 308 1 590 186 103 171 chr4 56234469 56234854 -146093493 + L1MC5 LINE L1 7167 7576 -385 310 240 80 20 chr4 56234938 56235038 -146093309 + L1MC5 LINE L1 7808 7913 -48 2306 102 3 0 chr4 56235255 56235560 -146092787 + AluSx SINE Alu 1 306 -6 1848 157 13 7 chr4 56236258 56236558 -146091789 + AluJb SINE Alu 1 302 -10 463 331 44 17 chr4 56236634 56236697 -146091650 + MER5A DNA MER1_type 1 61 -128 1939 148 10 7 chr4 56236697 56236995 -146091352 + AluJo SINE Alu 1 299 -13 463 331 44 17 chr4 56236995 56237112 -146091235 + MER5A DNA MER1_type 61 186 -3 1616 163 148 15 chr4 56237262 56237660 -146090687 + L1MB7 LINE L1 5734 6184 0 1862 180 40 36 chr4 56237864 56238369 -146089978 - MLT2A2 LTR ERVL 0 554 30 356 276 76 24 chr4 56238382 56238592 -146089755 + L1MC5 LINE L1 7705 7925 -36 1294 189 0 9 chr4 56238601 56238829 -146089518 + AluJb SINE Alu 68 293 -19 1323 249 93 64 chr4 56239648 56240197 -146088150 + L2 LINE L2 1424 1988 -1326 2208 53 4 0 chr4 56240198 56240463 -146087884 - L1PA4 LINE L1 0 6155 5890 4949 30 7 0 chr4 56240469 56241045 -146087302 + L1PA4 LINE L1 5254 5833 -322 1550 230 35 42 chr4 56241177 56241754 -146086593 + LTR23-int LTR ERV1 1 718 -4405 2585 153 52 5 chr4 56241754 56242159 -146086188 - MSTB LTR MaLR -2 424 1 1550 230 35 42 chr4 56242159 56242185 -146086162 + LTR23-int LTR ERV1 718 743 -4380 200 182 0 0 chr4 56242584 56242617 -146085730 + CT-rich Low_complexity Low_complexity 3 35 0 804 184 0 15 chr4 56243329 56243465 -146084882 + AluJb SINE Alu 1 134 -178 1436 185 0 0 chr4 56243779 56244011 -146084336 + AluSx SINE Alu 5 236 -76 451 279 102 10 chr4 56244113 56244310 -146084037 - L1M4 LINE L1 -1199 4947 4733 413 92 171 13 chr4 56244322 56244398 -146083949 + MER3 DNA MER1_type 122 209 0 * 583 136 23 0 chr4 56244398 56244445 -146083902 - MER3 DNA MER1_type -160 49 1 514 160 11 32 chr4 56245101 56245195 -146083152 - FRAM SINE Alu -14 162 71 282 259 74 28 chr4 56245234 56245342 -146083005 - L2 LINE L2 -11 3302 3190 242 306 176 35 chr4 56245323 56245493 -146082854 - MIR SINE MIR -17 245 52 * 260 273 0 15 chr4 56245535 56245601 -146082746 + MLT1J LTR MaLR 260 324 -187 2354 195 35 4 chr4 56245605 56246057 -146082290 + MLT1C LTR MaLR 2 467 0 2391 102 0 3 chr4 56246062 56246375 -146081972 + AluSq SINE Alu 1 312 -1 279 298 184 35 chr4 56246462 56246603 -146081744 + MLT1J LTR MaLR 336 497 -14 416 191 48 0 chr4 56247208 56247292 -146081055 + MER3 DNA MER1_type 1 88 -121 1305 203 92 64 chr4 56247329 56247909 -146080438 + MLT1D LTR MaLR 1 626 0 3195 127 8 8 chr4 56248738 56249233 -146079114 - L1MB4 LINE L1 0 6180 5686 674 236 28 34 chr4 56249321 56249499 -146078848 + MER5B DNA MER1_type 2 178 0 2138 106 3 3 chr4 56249822 56250127 -146078220 - AluSx SINE Alu 0 305 1 793 261 30 9 chr4 56250449 56250679 -146077668 + MIR SINE MIR 1 235 -27 237 218 10 20 chr4 56251194 56251295 -146077052 + (TA)n Simple_repeat Simple_repeat 2 101 0 304 272 0 33 chr4 56251295 56251387 -146076960 - L1MC4 LINE L1 -1339 6703 6615 493 213 0 28 chr4 56251388 56251529 -146076818 + (CATA)n Simple_repeat Simple_repeat 4 140 0 1717 175 75 9 chr4 56251644 56251992 -146076355 + MER4D LTR ERV1 307 677 -226 753 215 95 0 chr4 56252001 56252201 -146076146 + LTR23-int LTR ERV1 2244 2462 -2661 10088 229 28 19 chr4 56252201 56253462 -146074885 + L1PA13 LINE L1 917 2165 -4632 2327 100 0 7 chr4 56253462 56253762 -146074585 + AluSx SINE Alu 1 298 -14 10088 229 28 19 chr4 56253762 56256079 -146072268 + L1PA13 LINE L1 2165 4537 -2260 1206 129 0 0 chr4 56256083 56256246 -146072101 + AluJb SINE Alu 1 163 -149 346 208 39 0 chr4 56256246 56256323 -146072024 + L1PA15 LINE L1 2433 2512 -4337 781 204 15 0 chr4 56256374 56256506 -146071841 + AluJb SINE Alu 165 298 -14 1024 107 0 0 chr4 56256508 56256639 -146071708 + AluSg SINE Alu 1 131 -179 555 115 69 23 chr4 56256643 56256752 -146071595 + AluSc SINE Alu 211 309 0 * 5813 138 50 23 chr4 56256741 56256830 -146071517 + L1PA15 LINE L1 4570 4655 -2213 2322 107 3 0 chr4 56256830 56257138 -146071209 + AluSg SINE Alu 2 310 0 5813 138 50 23 chr4 56257138 56257571 -146070776 + L1PA15 LINE L1 4655 5075 -1793 2016 143 10 0 chr4 56257571 56257878 -146070469 + AluSx SINE Alu 1 310 -2 5813 138 50 23 chr4 56257878 56258174 -146070173 + L1PA15 LINE L1 5075 5361 -1507 257 0 30 0 chr4 56258174 56258207 -146070140 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5813 138 50 23 chr4 56258207 56259201 -146069146 + L1PA15 LINE L1 5361 6503 -365 414 0 0 0 chr4 56259201 56259247 -146069100 + (CA)n Simple_repeat Simple_repeat 2 47 0 5813 138 50 23 chr4 56259247 56259624 -146068723 + L1PA15 LINE L1 6503 6868 0 27 29 0 0 chr4 56260053 56260087 -146068260 + AT_rich Low_complexity Low_complexity 1 34 0 8598 148 30 58 chr4 56260203 56261010 -146067337 + LTR49-int LTR ERV1 3720 4548 -1783 192 40 0 0 chr4 56261010 56261035 -146067312 + (TATG)n Simple_repeat Simple_repeat 4 28 0 2140 112 0 3 chr4 56261035 56261322 -146067025 - AluSx SINE Alu -26 286 1 8598 148 30 58 chr4 56261322 56262325 -146066022 + LTR49-int LTR ERV1 4547 5382 -949 2306 88 10 0 chr4 56262325 56262622 -146065725 + AluSp SINE Alu 1 300 -13 8598 148 30 58 chr4 56262622 56262651 -146065696 + LTR49-int LTR ERV1 5382 5410 -921 2388 66 3 3 chr4 56262651 56262952 -146065395 + AluY SINE Alu 1 301 -10 12919 109 10 5 chr4 56263061 56264900 -146063447 - L1P LINE L1 -4296 1850 3 1260 184 5 0 chr4 56264910 56265122 -146063225 - L1 LINE L1 -1984 4162 3950 934 192 73 55 chr4 56265574 56265654 -146062693 - MER8 DNA MER2_type -1 238 161 2221 105 16 0 chr4 56265654 56265958 -146062389 + AluSx SINE Alu 1 309 -3 934 192 73 55 chr4 56265958 56266096 -146062251 - MER8 DNA MER2_type -78 161 16 228 35 0 0 chr4 56266410 56266439 -146061908 + (TG)n Simple_repeat Simple_repeat 2 30 0 574 214 9 0 chr4 56266938 56267050 -146061297 + FLAM_A SINE Alu 26 138 -4 407 68 17 0 chr4 56267052 56267111 -146061236 + (GA)n Simple_repeat Simple_repeat 1 60 0 804 239 0 0 chr4 56267544 56267711 -146060636 - AluJb SINE Alu -10 302 136 1750 275 34 16 chr4 56267775 56268277 -146060070 + MLT1J LTR MaLR 1 511 0 1725 94 0 5 chr4 56268434 56268658 -146059689 + AluSp SINE Alu 86 308 -5 1944 155 95 35 chr4 56268805 56269033 -146059314 - MSTA LTR MaLR 0 428 164 1742 90 132 19 chr4 56269033 56269299 -146059048 - AluSg1 SINE Alu -13 296 1 1944 155 95 35 chr4 56269299 56269469 -146058878 - MSTA LTR MaLR -264 164 6 228 261 80 23 chr4 56269522 56269610 -146058737 + MLT1K LTR MaLR 191 283 -305 309 298 111 30 chr4 56269715 56269913 -146058434 + MLT1K LTR MaLR 373 586 -2 481 242 23 16 chr4 56269940 56270068 -146058279 + MIR3 SINE MIR 32 160 -48 493 316 47 5 chr4 56270068 56270258 -146058089 + MER20B DNA MER1_type 1 198 -585 394 276 9 19 chr4 56270395 56270500 -146057847 + MER5A DNA MER1_type 1 104 -85 785 203 0 0 chr4 56270519 56270647 -146057700 + FLAM_A SINE Alu 4 131 -2 300 259 58 127 chr4 56270792 56270997 -146057350 - MIR SINE MIR -39 223 33 868 205 92 120 chr4 56271301 56271803 -146056544 + MLT1J2 LTR MaLR 3 409 0 2354 61 0 0 chr4 56272317 56272597 -146055750 + AluY SINE Alu 18 297 -14 226 234 0 31 chr4 56273849 56273913 -146054434 + (CGGGG)n Simple_repeat Simple_repeat 3 64 0 192 296 185 6 chr4 56274427 56274589 -146053758 - L2 LINE L2 -8 3305 3115 2017 91 44 0 chr4 56274857 56275161 -146053186 + AluSp SINE Alu 1 316 0 334 316 44 29 chr4 56275980 56276116 -146052231 - L2 LINE L2 -1 3271 3134 256 362 0 0 chr4 56276593 56276720 -146051627 - MIR SINE MIR 0 262 136 931 206 306 0 chr4 56276720 56276939 -146051408 + AluJb SINE Alu 1 286 -16 2318 104 0 0 chr4 56276939 56277238 -146051109 - AluSg SINE Alu -11 299 1 735 162 0 0 chr4 56278532 56278643 -146049704 - FAM SINE Alu -8 177 67 1142 277 69 16 chr4 56278663 56279039 -146049308 + LTR32 LTR ERVL 30 425 -46 333 148 125 0 chr4 56279074 56279141 -146049206 - FRAM/FAM SINE Alu -95 71 11 641 126 0 0 chr4 56279204 56279291 -146049056 + AluJb SINE Alu 2 88 -224 465 283 69 29 chr4 56279291 56279464 -146048883 + LTR32 LTR ERVL 34 213 -258 1302 148 0 19 chr4 56279464 56279674 -146048673 + AluJb SINE Alu 92 297 -15 23 0 0 0 chr4 56280160 56280183 -146048164 + AT_rich Low_complexity Low_complexity 1 23 0 1670 192 13 3 chr4 56280213 56280515 -146047832 - AluJo SINE Alu -5 307 3 234 246 0 0 chr4 56280865 56280922 -146047425 + L2 LINE L2 3257 3313 0 2056 123 14 0 chr4 56280950 56281242 -146047105 - AluSq SINE Alu -13 300 5 252 320 13 0 chr4 56281838 56281913 -146046434 - L2 LINE L2 -11 3302 3227 430 272 80 16 chr4 56282878 56283003 -146045344 + MIR SINE MIR 22 154 -108 1029 251 130 35 chr4 56283743 56283868 -146044479 - L1ME4a LINE L1 -22 6099 5987 2232 100 0 53 chr4 56283868 56284188 -146044159 - AluY SINE Alu -8 303 1 1029 251 130 35 chr4 56284188 56284555 -146043792 - L1ME4a LINE L1 -134 5987 5560 2341 107 0 0 chr4 56284937 56285237 -146043110 - AluSx SINE Alu -12 300 1 1975 192 16 25 chr4 56285581 56285946 -146042401 - MLT1A1 LTR MaLR -3 362 1 512 274 31 24 chr4 56286007 56286261 -146042086 - L1ME4a LINE L1 -842 5517 5259 832 169 78 0 chr4 56286470 56286632 -146041715 - FRAM SINE Alu 0 167 1 272 252 10 58 chr4 56287001 56287104 -146041243 + LTR33A LTR ERVL 426 523 0 25 51 0 0 chr4 56287267 56287306 -146041041 + AT_rich Low_complexity Low_complexity 1 39 0 1862 172 29 82 chr4 56287366 56287576 -146040771 + MLT1B LTR MaLR 1 180 -210 2192 128 0 6 chr4 56287576 56287889 -146040458 + AluSq SINE Alu 3 313 0 1862 172 29 82 chr4 56287889 56288090 -146040257 + MLT1B LTR MaLR 180 390 0 1207 191 0 25 chr4 56288189 56288425 -146039922 - AluJo SINE Alu -82 230 1 6619 144 31 16 chr4 56288446 56290396 -146037951 - L1MA2 LINE L1 -1 6303 4322 2388 85 6 20 chr4 56340452 56340794 -145987553 + L1PA8 LINE L1 5835 6171 -1 2652 16 0 0 chr4 56340798 56341101 -145987246 + AluY SINE Alu 1 303 -8 2180 231 38 25 chr4 56341106 56341811 -145986536 + L1M4 LINE L1 4235 4948 -1198 399 135 11 22 chr4 56341811 56341900 -145986447 + GA-rich Low_complexity Low_complexity 1 88 0 387 225 67 0 chr4 56341900 56341989 -145986358 + L1M4 LINE L1 4942 5036 -1110 1086 100 69 0 chr4 56342057 56342217 -145986130 + AluSg/x SINE Alu 131 301 -11 329 279 76 63 chr4 56342391 56342549 -145985798 - L2 LINE L2 0 3313 3154 593 156 65 9 chr4 56342557 56342697 -145985650 + L1MA9 LINE L1 6114 6274 -25 1817 126 0 66 chr4 56343225 56343366 -145984981 + AluSx SINE Alu 5 115 -197 2410 63 0 0 chr4 56343366 56343667 -145984680 + AluY SINE Alu 1 301 -10 1817 126 0 66 chr4 56343667 56343842 -145984505 + AluSx SINE Alu 115 300 -12 198 0 0 0 chr4 56343881 56343903 -145984444 + (T)n Simple_repeat Simple_repeat 1 22 0 475 0 30 15 chr4 56344020 56344087 -145984260 + L1HS LINE L1 6086 6153 -2 299 330 10 0 chr4 56344110 56344213 -145984134 - L1ME LINE L1 -256 5865 5762 1871 219 44 16 chr4 56345336 56345789 -145982558 - MLT1C LTR MaLR -1 466 1 344 324 9 9 chr4 56345790 56345895 -145982452 + MIR SINE MIR 33 137 -71 258 272 125 44 chr4 56347291 56347427 -145980920 + L2 LINE L2 2255 2401 -913 366 243 70 24 chr4 56347560 56347756 -145980591 + MER115 DNA AcHobo 179 417 -276 297 356 53 0 chr4 56347896 56348084 -145980263 + L2 LINE L2 2503 2700 -614 254 307 222 23 chr4 56348116 56348292 -145980055 + L2 LINE L2 2982 3192 -80 2635 177 25 46 chr4 56348341 56348860 -145979487 + MLT2B3 LTR ERVL 1 508 -46 1733 160 7 0 chr4 56348861 56349155 -145979192 + AluJo SINE Alu 1 296 -16 697 232 0 0 chr4 56349159 56349297 -145979050 + FLAM_C SINE Alu 3 140 -3 370 143 0 29 chr4 56349308 56349378 -145978969 + MLT2B2 LTR ERVL 448 515 0 1926 142 3 13 chr4 56349449 56349760 -145978587 + AluSc SINE Alu 2 309 0 747 137 8 0 chr4 56350082 56350206 -145978141 - L1MA4 LINE L1 0 6300 6176 1946 62 0 0 chr4 56350206 56350446 -145977901 - L1PA5 LINE L1 0 6154 5912 1748 123 67 0 chr4 56350449 56350734 -145977613 - L1MA4 LINE L1 -110 6190 5887 877 267 55 75 chr4 56351076 56351477 -145976870 + MLT1J LTR MaLR 115 507 -4 228 259 19 0 chr4 56352148 56352202 -145976145 - MIR SINE MIR -88 120 66 200 33 0 33 chr4 56352209 56352239 -145976108 + (TAA)n Simple_repeat Simple_repeat 2 30 0 400 344 69 5 chr4 56352259 56352448 -145975899 - MIR SINE MIR -4 258 58 330 106 0 0 chr4 56352558 56352605 -145975742 - L1PB1 LINE L1 -3 6148 6102 685 95 87 26 chr4 56352605 56352706 -145975641 + L1P5 LINE L1 5680 5794 -357 621 40 0 0 chr4 56352706 56352782 -145975565 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 685 95 87 26 chr4 56352782 56352800 -145975547 + L1P5 LINE L1 5794 5809 -342 452 266 41 97 chr4 56354105 56354372 -145973975 + L2 LINE L2 3011 3262 -10 441 294 138 9 chr4 56354400 56354618 -145973729 + MIR SINE MIR 1 246 -16 1820 222 20 10 chr4 56354955 56355347 -145973000 - MSTD LTR MaLR 0 396 1 330 256 28 63 chr4 56355503 56355668 -145972679 - MIR SINE MIR -61 147 39 770 131 0 0 chr4 56355686 56355793 -145972554 + MSTB1 LTR MaLR 7 113 -319 575 239 100 97 chr4 56355807 56356336 -145972011 + MLT1F1 LTR MaLR 31 559 0 2226 80 6 16 chr4 56356662 56356974 -145971373 - AluSp SINE Alu -4 309 1 22 0 0 0 chr4 56357179 56357201 -145971146 + AT_rich Low_complexity Low_complexity 1 22 0 1958 132 3 0 chr4 56357201 56357488 -145970859 - AluSx SINE Alu -24 288 1 1331 130 48 13 chr4 56357612 56357843 -145970504 + L1MA7 LINE L1 5587 5825 -466 1614 175 11 32 chr4 56357843 56358123 -145970224 + AluJo SINE Alu 1 274 -38 838 146 6 6 chr4 56358125 56358283 -145970064 + GA-rich Low_complexity Low_complexity 2 159 0 381 98 0 0 chr4 56358284 56358335 -145970012 + (GAAA)n Simple_repeat Simple_repeat 4 54 0 393 186 0 43 chr4 56358335 56358405 -145969942 + AluSc SINE Alu 127 193 -106 207 161 0 0 chr4 56358405 56358436 -145969911 + polypurine Low_complexity Low_complexity 1 31 0 * 653 142 18 35 chr4 56358407 56358576 -145969771 + GA-rich Low_complexity Low_complexity 3 168 0 630 226 0 23 chr4 56358584 56358717 -145969630 + FLAM_A SINE Alu 1 130 -3 1432 134 27 7 chr4 56358724 56359132 -145969215 + L1MA7 LINE L1 5814 6291 0 198 206 32 32 chr4 56359771 56359834 -145968513 - L2 LINE L2 -2 3270 3208 216 0 0 0 chr4 56359851 56359875 -145968472 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 180 211 26 0 chr4 56359883 56359921 -145968426 - L2 LINE L2 -19 3294 3256 303 216 45 80 chr4 56359948 56360036 -145968311 + L2 LINE L2 3210 3294 -19 2573 51 0 0 chr4 56360272 56360568 -145967779 + AluY SINE Alu 1 296 -15 256 325 116 31 chr4 56360600 56360835 -145967512 - MIR SINE MIR -1 261 9 471 281 100 33 chr4 56360929 56361139 -145967208 - MIR SINE MIR -37 225 2 1739 186 96 82 chr4 56361174 56361664 -145966683 + MLT1D LTR MaLR 1 497 -8 276 214 14 14 chr4 56361670 56361740 -145966607 - L2 LINE L2 -25 3288 3219 1497 201 80 0 chr4 56361921 56362235 -145966112 - MER2 DNA MER2_type 0 345 7 2754 118 26 12 chr4 56362388 56362810 -145965537 - MSTA LTR MaLR 0 428 1 29 47 0 0 chr4 56363032 56363075 -145965272 + AT_rich Low_complexity Low_complexity 1 43 0 1076 234 72 9 chr4 56363640 56363986 -145964361 + L1M4 LINE L1 3612 3979 -2167 1217 205 44 34 chr4 56364025 56364323 -145964024 + L1M4 LINE L1 3950 4250 -1896 30998 114 8 18 chr4 56364327 56370582 -145957765 + L1PA8 LINE L1 1 6222 -265 1672 97 50 23 chr4 56370684 56370943 -145957404 - AluSg SINE Alu -44 266 1 973 266 86 34 chr4 56370988 56371555 -145956792 - L2 LINE L2 -795 2519 1923 1890 155 0 3 chr4 56371577 56371884 -145956463 + AluJb SINE Alu 1 306 0 526 254 233 0 chr4 56371997 56372186 -145956161 - MIR SINE MIR -22 240 8 862 263 60 91 chr4 56372441 56372582 -145955765 + MLT1H1 LTR MaLR 30 174 -381 2056 132 0 0 chr4 56372582 56372902 -145955445 - AluSx SINE Alu 0 320 1 862 263 60 91 chr4 56372902 56373295 -145955052 + MLT1H1 LTR MaLR 174 548 -7 257 234 252 0 chr4 56373471 56373578 -145954769 + L1ME4a LINE L1 5986 6119 -2 618 270 33 114 chr4 56373752 56374181 -145954166 + MLT1L LTR MaLR 222 615 0 204 311 15 30 chr4 56374193 56374217 -145954130 - L3b LINE CR1 -177 1406 1383 1280 224 0 8 chr4 56374217 56374458 -145953889 + MER8 DNA MER2_type 1 239 0 204 311 15 30 chr4 56374458 56374565 -145953782 - L3b LINE CR1 -200 1383 1277 595 189 118 37 chr4 56374570 56374755 -145953592 + MLT2B1 LTR ERVL 217 520 0 894 217 42 18 chr4 56374813 56375099 -145953248 - L1MC5 LINE L1 -61 7900 7608 2030 124 29 16 chr4 56375125 56375431 -145952916 + AluJb SINE Alu 1 310 -2 291 229 37 37 chr4 56375461 56375570 -145952777 - L1ME4a LINE L1 -13 6108 6000 226 218 153 40 chr4 56375704 56375828 -145952519 - L1ME4a LINE L1 -114 6007 5870 43751 33 22 2 chr4 56375838 56381858 -145946489 + L1HS LINE L1 1 6147 -8 1728 279 66 31 chr4 56382223 56383010 -145945337 + L2 LINE L2 2284 3080 -233 761 206 87 143 chr4 56383053 56383431 -145944916 + LTR16A1 LTR ERVL 19 370 -87 2169 122 3 25 chr4 56383431 56383750 -145944597 + AluSq SINE Alu 1 312 -1 761 206 87 143 chr4 56383750 56383818 -145944529 + LTR16A1 LTR ERVL 370 440 -17 592 217 120 0 chr4 56383833 56384008 -145944339 + L2 LINE L2 3118 3313 0 581 279 45 49 chr4 56384746 56384993 -145943354 - MIR SINE MIR 0 262 17 2342 78 172 5 chr4 56385053 56385437 -145942910 + LTR7 LTR ERV1 1 448 -2 1708 74 59 0 chr4 56385655 56385769 -145942578 + L1MA2 LINE L1 6034 6140 -164 2026 142 0 0 chr4 56385769 56386162 -145942185 + AluSx SINE Alu 1 393 0 1708 74 59 0 chr4 56386162 56386302 -145942045 + L1MA2 LINE L1 6140 6304 0 2273 231 53 12 chr4 56386346 56386856 -145941491 - MLT1F LTR MaLR -10 532 2 243 204 0 0 chr4 56386923 56386977 -145941370 + (CA)n Simple_repeat Simple_repeat 1 54 0 277 217 183 8 chr4 56386989 56387109 -145941238 + MIR SINE MIR 122 262 0 332 231 0 0 chr4 56387907 56387972 -145940375 - L2 LINE L2 -48 3265 3201 837 286 82 34 chr4 56388155 56388592 -145939755 + LTR33A LTR ERVL 66 523 0 512 240 13 32 chr4 56390379 56390533 -145937814 + MIR SINE MIR 111 261 -1 229 305 8 53 chr4 56390863 56390994 -145937353 - L1ME4a LINE L1 -1952 5856 5732 244 212 106 12 chr4 56392780 56392865 -145935482 - L2 LINE L2 -8 3305 3213 * 508 299 18 6 chr4 56392859 56393026 -145935321 - MIR SINE MIR -24 238 70 1642 274 81 16 chr4 56393698 56394402 -145933945 + L2 LINE L2 754 1503 -1811 225 224 45 60 chr4 56394443 56394510 -145933837 - MLT1L LTR MaLR -343 272 207 1760 153 28 14 chr4 56395245 56395533 -145932814 + AluJb SINE Alu 1 292 -20 423 276 78 57 chr4 56395809 56396092 -145932255 - MLT1L LTR MaLR -326 289 1 337 294 15 33 chr4 56396098 56396266 -145932081 + MIR SINE MIR 4 246 -16 209 69 0 0 chr4 56396266 56396295 -145932052 + L2 LINE L2 3224 3252 -20 337 294 15 33 chr4 56396295 56396312 -145932035 + MIR SINE MIR 246 262 0 231 344 48 16 chr4 56396353 56396478 -145931869 - MIR SINE MIR -78 184 56 1143 270 71 48 chr4 56396837 56397333 -145931014 + MLT1K LTR MaLR 79 585 -3 216 0 0 0 chr4 56398523 56398547 -145929800 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 1757 183 0 16 chr4 56398785 56399102 -145929245 - AluJb SINE Alu 0 312 1 285 128 0 0 chr4 56400784 56400831 -145927516 + (CA)n Simple_repeat Simple_repeat 2 48 0 752 303 4 9 chr4 56401026 56401254 -145927093 + MIR SINE MIR 28 254 -8 2334 110 7 0 chr4 56401393 56401702 -145926645 + AluY SINE Alu 1 311 0 393 250 20 10 chr4 56401769 56401869 -145926478 - L2 LINE L2 -5 3267 3167 653 191 58 75 chr4 56402635 56402823 -145925524 - L2 LINE L2 0 3313 3129 2329 101 0 3 chr4 56404029 56404327 -145924020 + AluSx SINE Alu 1 297 -15 360 0 0 0 chr4 56405770 56405810 -145922537 + (TG)n Simple_repeat Simple_repeat 2 41 0 206 309 15 0 chr4 56406403 56406471 -145921876 + L3 LINE CR1 1408 1476 -101 2900 143 56 24 chr4 56406509 56407047 -145921300 - L1MC1 LINE L1 0 6333 5779 778 266 102 23 chr4 56407279 56407584 -145920763 - MLT1K LTR MaLR -28 560 232 2024 146 99 45 chr4 56407813 56408145 -145920202 + MSTB LTR MaLR 1 360 -66 216 0 0 0 chr4 56408145 56408169 -145920178 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2024 146 99 45 chr4 56408169 56408240 -145920107 + MSTB LTR MaLR 360 426 0 225 136 0 68 chr4 56408486 56408530 -145919817 + MLT1J LTR MaLR 93 133 -378 * 233 322 69 11 chr4 56408506 56408593 -145919754 + LTR67 LTR ERVL 114 205 -352 406 282 49 6 chr4 56408752 56408915 -145919432 + LTR67 LTR ERVL 359 528 -29 190 226 75 38 chr4 56409241 56409294 -145919053 - L2 LINE L2 -1 3312 3258 434 308 38 44 chr4 56409495 56409654 -145918693 + L2 LINE L2 3107 3264 -8 267 31 0 0 chr4 56409840 56409872 -145918475 + (A)n Simple_repeat Simple_repeat 1 32 0 266 299 52 0 chr4 56409872 56409949 -145918398 + MIR SINE MIR 63 143 -119 909 216 242 80 chr4 56409953 56410429 -145917918 + MLT1H1 LTR MaLR 2 554 -1 332 293 19 19 chr4 56410429 56410535 -145917812 + MIR SINE MIR 141 246 -16 312 27 0 0 chr4 56410872 56410909 -145917438 + (TG)n Simple_repeat Simple_repeat 2 38 0 182 236 18 0 chr4 56416430 56416485 -145911862 + CT-rich Low_complexity Low_complexity 2 57 0 442 243 99 20 chr4 56417150 56417302 -145911045 - MIR SINE MIR -15 247 84 302 264 54 47 chr4 56417728 56417857 -145910490 - MIR SINE MIR -51 211 82 182 212 0 0 chr4 56418613 56418646 -145909701 - MIR SINE MIR -90 118 86 197 167 0 17 chr4 56418651 56418711 -145909636 + GA-rich Low_complexity Low_complexity 1 59 0 419 293 115 19 chr4 56419040 56419197 -145909150 - MIR SINE MIR -13 249 78 415 260 240 0 chr4 56421075 56421271 -145907076 - MIR SINE MIR -19 243 1 336 274 170 22 chr4 56421477 56421612 -145906735 - MIR SINE MIR -80 182 28 1719 124 15 11 chr4 56422154 56422419 -145905928 - AluSp SINE Alu -12 301 36 25 51 0 0 chr4 56422419 56422458 -145905889 + AT_rich Low_complexity Low_complexity 1 39 0 417 195 42 42 chr4 56422720 56422838 -145905509 + L2 LINE L2 3154 3271 -1 25 31 0 0 chr4 56423993 56424025 -145904322 + AT_rich Low_complexity Low_complexity 1 32 0 1501 185 30 52 chr4 56424779 56425146 -145903201 - MLT1B LTR MaLR -30 360 2 757 299 33 18 chr4 56425161 56425411 -145902936 - MIR SINE MIR 0 262 10 486 0 0 0 chr4 56426038 56426092 -145902255 + (TA)n Simple_repeat Simple_repeat 1 54 0 279 337 84 10 chr4 56426344 56426546 -145901801 + MIR SINE MIR 40 256 -6 2116 111 0 22 chr4 56426705 56427020 -145901327 + AluSx SINE Alu 3 310 -2 766 236 75 28 chr4 56427647 56427859 -145900488 + MIR SINE MIR 6 227 -35 251 217 84 124 chr4 56428202 56428428 -145899919 + L2 LINE L2 2918 3134 -138 207 250 0 0 chr4 56428421 56428457 -145899890 + L2 LINE L2 3255 3290 -23 * 191 180 0 164 chr4 56428428 56428489 -145899858 + L2 LINE L2 3221 3271 -1 * 245 295 0 42 chr4 56429153 56429248 -145899099 + CT-rich Low_complexity Low_complexity 4 94 0 23 0 0 0 chr4 56430521 56430544 -145897803 + AT_rich Low_complexity Low_complexity 1 23 0 2098 119 3 3 chr4 56430570 56430881 -145897466 + AluSx SINE Alu 1 311 -1 410 286 27 54 chr4 56431595 56431780 -145896567 + L2 LINE L2 3102 3281 -32 360 318 60 13 chr4 56431840 56431991 -145896356 + L3 LINE CR1 805 962 -615 277 314 47 0 chr4 56432070 56432156 -145896191 - L2 LINE L2 -7 3306 3217 * 342 277 50 0 chr4 56432138 56432257 -145896090 - L2 LINE L2 -408 2906 2782 841 288 50 74 chr4 56432263 56432648 -145895699 + L3 LINE CR1 1022 1396 -181 3610 71 7 0 chr4 56432648 56433096 -145895251 + MLT2A2 LTR ERVL 3 453 0 841 288 50 74 chr4 56433096 56433172 -145895175 + L3 LINE CR1 1396 1472 -105 569 284 88 44 chr4 56434599 56434916 -145893431 + LTR16C LTR ERVL 161 491 0 312 315 174 23 chr4 56435099 56435318 -145893029 - MIR SINE MIR -6 256 5 2468 193 36 18 chr4 56436190 56436741 -145891606 + LTR27 LTR ERV1 3 1252 -137 399 218 49 70 chr4 56436761 56436903 -145891444 + LTR27 LTR ERV1 498 636 0 187 263 70 0 chr4 56437055 56437112 -145891235 + L3b LINE CR1 1180 1240 -343 625 255 22 69 chr4 56437154 56437385 -145890962 + L2 LINE L2 3094 3313 0 2450 14 0 0 chr4 56438127 56438405 -145889942 - AluYb8 SINE Alu -2 316 39 843 328 161 24 chr4 56438683 56439478 -145888869 + L2 LINE L2 1809 2712 -602 313 336 18 0 chr4 56439496 56439606 -145888741 - MIR SINE MIR -37 225 114 589 210 60 24 chr4 56439895 56440062 -145888285 - L1ME3A LINE L1 -39 6131 5959 222 240 80 0 chr4 56440175 56440225 -145888122 + L2 LINE L2 3218 3271 -1 778 250 14 38 chr4 56441425 56441637 -145886710 - L2 LINE L2 0 3313 3107 352 327 95 6 chr4 56441642 56441810 -145886537 - MIR SINE MIR -49 213 31 184 318 156 17 chr4 56442597 56442776 -145885571 + L2 LINE L2 2678 2881 -433 207 253 212 0 chr4 56442833 56442932 -145885415 + L2 LINE L2 2990 3109 -163 243 214 36 0 chr4 56443413 56443469 -145884878 + CT-rich Low_complexity Low_complexity 5 62 0 605 203 86 0 chr4 56443470 56443598 -145884749 - FLAM_A SINE Alu 0 142 4 233 290 29 0 chr4 56443599 56443668 -145884679 + MIR3 SINE MIR 118 188 -20 261 194 0 42 chr4 56443861 56443933 -145884414 + MLT1K LTR MaLR 194 262 -326 221 196 59 20 chr4 56443990 56444041 -145884306 - L2 LINE L2 -3 3310 3258 266 254 0 0 chr4 56445345 56445400 -145882947 + MLT1G1 LTR MaLR 6 60 -535 44367 44 7 0 chr4 56445408 56451522 -145876825 - L1PA4 LINE L1 -2 6153 1 1108 263 234 26 chr4 56451538 56451957 -145876390 + MLT1G1 LTR MaLR 90 595 0 1099 239 73 0 chr4 56452855 56453089 -145875258 - MIR SINE MIR 0 262 12 240 331 58 36 chr4 56453252 56453391 -145874956 - L3b LINE CR1 -153 1430 1289 201 264 76 111 chr4 56453781 56453925 -145874422 - L2 LINE L2 -20 3293 3155 430 213 44 52 chr4 56453963 56454099 -145874248 + MER112 DNA MER1_type 119 253 -7 236 272 62 12 chr4 56455003 56455084 -145873263 + MIR SINE MIR 14 98 -164 462 221 25 33 chr4 56455143 56455265 -145873082 + MIR SINE MIR 101 221 -41 289 296 23 23 chr4 56456138 56456270 -145872077 - MER103 DNA DNA -27 139 8 213 309 29 0 chr4 56456381 56456449 -145871898 - MER91A DNA MER1_type -123 73 4 315 0 0 0 chr4 56457938 56457973 -145870374 + (TG)n Simple_repeat Simple_repeat 2 36 0 1378 272 91 15 chr4 56459194 56459742 -145868605 + L1MC4a LINE L1 5392 5981 -1827 186 43 0 0 chr4 56459836 56459859 -145868488 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 330 229 114 0 chr4 56459891 56460022 -145868325 + L1ME4a LINE L1 5908 6053 -68 28 29 0 0 chr4 56460063 56460098 -145868249 + AT_rich Low_complexity Low_complexity 1 35 0 1166 265 59 20 chr4 56460292 56460734 -145867613 + MLT1J LTR MaLR 43 501 -10 2623 112 5 3 chr4 56460891 56461265 -145867082 + THE1C LTR MaLR 1 375 0 716 211 73 18 chr4 56461753 56461971 -145866376 - MER69 DNA AcHobo -93 2433 2204 893 172 78 0 chr4 56461976 56462168 -145866179 + LTR50 LTR ERVL 1 207 -588 758 276 94 66 chr4 56463325 56463422 -145864925 - MLT1J2 LTR MaLR -74 372 279 3265 129 21 21 chr4 56463422 56463949 -145864398 + MER1A DNA MER1_type 1 527 0 758 276 94 66 chr4 56463949 56464213 -145864134 - MLT1J2 LTR MaLR -167 279 1 794 207 77 22 chr4 56464837 56465059 -145863288 - ORSL DNA AcHobo 0 275 42 228 67 0 0 chr4 56465812 56465842 -145862505 + (TCCA)n Simple_repeat Simple_repeat 1 30 0 394 315 47 7 chr4 56465869 56466020 -145862327 - MIR3 SINE MIR -39 169 8 2165 91 3 14 chr4 56466516 56466832 -145861515 + AluSx SINE Alu 1 313 0 1608 189 10 33 chr4 56467126 56467433 -145860914 - AluJo SINE Alu -11 301 2 829 276 9 0 chr4 56467434 56467644 -145860703 - MIR SINE MIR -44 218 7 226 330 33 11 chr4 56467724 56467815 -145860532 - L2 LINE L2 -18 3254 3162 531 252 0 9 chr4 56468584 56468691 -145859656 - L2 LINE L2 -12 3301 3196 23 0 0 0 chr4 56468694 56468717 -145859630 + AT_rich Low_complexity Low_complexity 1 23 0 225 245 19 0 chr4 56469004 56469057 -145859290 - LTR16C LTR ERVL 0 491 438 294 344 50 19 chr4 56470583 56470743 -145857604 - MIR3 SINE MIR -20 188 24 217 274 0 0 chr4 56470810 56470861 -145857486 - MIR3 SINE MIR -21 187 137 213 39 0 0 chr4 56471199 56471225 -145857122 + (TTA)n Simple_repeat Simple_repeat 2 27 0 412 267 43 0 chr4 56471767 56471883 -145856464 - MIR SINE MIR -43 219 99 635 323 142 3 chr4 56472036 56472367 -145855980 + LTR16C LTR ERVL 86 462 -29 3445 168 30 39 chr4 56472399 56473145 -145855202 - L1MB7 LINE L1 0 6184 5446 1920 134 0 3 chr4 56473421 56473744 -145854603 + AluSx SINE Alu 1 322 0 999 274 17 0 chr4 56475225 56475459 -145852888 - MIR SINE MIR -24 238 1 284 157 8 50 chr4 56475481 56475602 -145852745 + (TA)n Simple_repeat Simple_repeat 2 117 0 198 118 0 0 chr4 56476598 56476632 -145851715 + (CA)n Simple_repeat Simple_repeat 2 35 0 1901 146 14 10 chr4 56478279 56478567 -145849780 + AluJo SINE Alu 1 289 -23 283 255 153 10 chr4 56478993 56479091 -145849256 + L2 LINE L2 3161 3272 0 455 285 31 10 chr4 56479142 56479335 -145849012 - MARNA DNA Mariner -350 236 40 4580 119 9 7 chr4 56479987 56480740 -145847607 + L1P LINE L1 4390 5144 -1002 1034 210 181 62 chr4 56483986 56484339 -145844008 + MSTD LTR MaLR 1 395 -1 313 276 55 8 chr4 56484913 56485040 -145843307 + L1ME LINE L1 5629 5761 -360 1033 183 30 0 chr4 56485137 56485334 -145843013 + MER3 DNA MER1_type 7 209 0 270 204 0 0 chr4 56485288 56485342 -145843005 - MER3 DNA MER1_type -116 93 40 * 262 156 0 0 chr4 56485406 56485451 -145842896 + L2 LINE L2 3264 3308 -5 2411 140 68 14 chr4 56485586 56486015 -145842332 + LTR47A LTR ERVL 1 452 0 2433 85 3 0 chr4 56486054 56486361 -145841986 - AluSp SINE Alu -3 310 3 235 300 30 0 chr4 56487001 56487101 -145841246 + MER113 DNA MER1_type? 4 106 -415 946 247 242 5 chr4 56487144 56487549 -145840798 - L2 LINE L2 -5 3308 2808 375 260 70 0 chr4 56488208 56488308 -145840039 - L2 LINE L2 0 3313 3207 1404 206 16 0 chr4 56488351 56488599 -145839748 - MIR SINE MIR -3 259 8 400 264 152 11 chr4 56489070 56489248 -145839099 + MLT1I LTR MaLR 19 221 -188 391 264 47 0 chr4 56489276 56489382 -145838965 + MLT1I LTR MaLR 282 392 -17 248 259 265 38 chr4 56489459 56489644 -145838703 - MIR SINE MIR 0 262 36 310 211 200 11 chr4 56489767 56489857 -145838490 - L2 LINE L2 -30 3242 3136 232 188 0 21 chr4 56489939 56489987 -145838360 + GA-rich Low_complexity Low_complexity 2 48 0 298 326 29 7 chr4 56491110 56491248 -145837099 + L2 LINE L2 2931 3071 -201 510 305 56 5 chr4 56491395 56491608 -145836739 - L2 LINE L2 -4 3309 3086 230 301 282 0 chr4 56491784 56491887 -145836460 + L2 LINE L2 3138 3269 -3 1398 126 39 17 chr4 56492020 56492251 -145836096 - MER46A DNA MER2_type 0 236 1 756 239 65 5 chr4 56492685 56492886 -145835461 + MIR SINE MIR 17 229 -33 708 171 51 32 chr4 56493536 56493694 -145834653 - MSTD LTR MaLR 0 396 236 475 175 112 33 chr4 56493846 56493979 -145834368 - MSTC LTR MaLR -215 150 6 29 0 0 0 chr4 56495529 56495558 -145832789 + AT_rich Low_complexity Low_complexity 1 29 0 722 261 99 20 chr4 56497581 56497934 -145830413 + L1M4 LINE L1 4538 4918 -1228 23 0 0 0 chr4 56498022 56498045 -145830302 + AT_rich Low_complexity Low_complexity 1 23 0 395 284 39 19 chr4 56498046 56498201 -145830146 + L1M4 LINE L1 5176 5333 -813 1415 86 16 4 chr4 56498534 56498773 -145829574 - L1PA8A LINE L1 -286 5845 5643 1817 112 12 8 chr4 56498773 56499032 -145829315 - AluSx SINE Alu -52 260 1 1615 209 7 7 chr4 56501425 56501727 -145826620 - AluJo SINE Alu -10 302 1 261 340 133 44 chr4 56502630 56502833 -145825514 - L2 LINE L2 -86 3186 2966 240 190 249 71 chr4 56503674 56503854 -145824493 + MIR SINE MIR 2 199 -57 409 226 12 0 chr4 56503970 56504054 -145824293 + L2 LINE L2 3229 3313 0 22 0 0 0 chr4 56505740 56505762 -145822585 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 56506910 56506932 -145821415 + AT_rich Low_complexity Low_complexity 1 22 0 303 28 0 0 chr4 56507250 56507286 -145821061 + (TC)n Simple_repeat Simple_repeat 1 36 0 198 0 0 0 chr4 56507285 56507307 -145821040 + (CA)n Simple_repeat Simple_repeat 1 22 0 * 207 0 0 0 chr4 56507723 56507746 -145820601 + (TG)n Simple_repeat Simple_repeat 2 24 0 245 212 76 0 chr4 56508592 56508658 -145819689 - MIR3 SINE MIR -26 182 112 233 337 43 0 chr4 56509092 56509184 -145819163 - L2 LINE L2 -260 3012 2917 262 186 309 0 chr4 56509564 56509661 -145818686 + L2 LINE L2 3142 3268 -4 402 310 162 28 chr4 56510202 56510418 -145817929 - L2 LINE L2 -6 3266 3022 26 0 0 0 chr4 56510593 56510619 -145817728 + AT_rich Low_complexity Low_complexity 1 26 0 304 276 13 0 chr4 56514169 56514245 -145814102 + Charlie8 DNA MER1_type 158 234 -2183 33 56 0 0 chr4 56515575 56515629 -145812718 + AT_rich Low_complexity Low_complexity 1 54 0 845 297 29 53 chr4 56515787 56516269 -145812078 + LTR16B LTR ERVL 17 462 -2 347 172 25 64 chr4 56516303 56516460 -145811887 + CT-rich Low_complexity Low_complexity 3 153 0 204 167 0 0 chr4 56516690 56516738 -145811609 + C-rich Low_complexity Low_complexity 6 53 0 23 0 0 0 chr4 56517329 56517352 -145810995 + AT_rich Low_complexity Low_complexity 1 23 0 347 271 83 15 chr4 56517762 56517895 -145810452 - MIR3 SINE MIR -23 185 44 330 239 94 17 chr4 56518260 56518377 -145809970 + MIR SINE MIR 72 197 -65 505 257 108 92 chr4 56521458 56521773 -145806574 + MLT1I LTR MaLR 71 390 -19 201 247 0 0 chr4 56522085 56522166 -145806181 + C-rich Low_complexity Low_complexity 3 83 0 21 0 0 0 chr4 56522447 56522468 -145805879 + AT_rich Low_complexity Low_complexity 1 21 0 201 358 101 9 chr4 56522970 56523079 -145805268 - MIR SINE MIR -15 247 129 216 315 112 0 chr4 56523296 56523385 -145804962 - MIR SINE MIR -84 178 80 762 258 75 0 chr4 56523765 56523978 -145804369 + MIR SINE MIR 5 233 -29 339 188 0 0 chr4 56524363 56524427 -145803920 - MER116 DNA Mariner -4 76 13 772 288 21 25 chr4 56525263 56525503 -145802844 - MIR SINE MIR -8 254 16 460 268 68 75 chr4 56526199 56526479 -145801868 - MLT1K LTR MaLR 0 588 311 232 247 0 99 chr4 56528259 56528340 -145800007 + MIR3 SINE MIR 125 197 -11 802 295 19 31 chr4 56528740 56528998 -145799349 - MIR SINE MIR -2 260 6 346 232 84 28 chr4 56529016 56529158 -145799189 + MIR3 SINE MIR 11 160 -48 515 267 93 17 chr4 56529158 56529330 -145799017 + MER5A DNA MER1_type 1 185 -4 203 133 0 0 chr4 56529716 56529746 -145798601 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 252 0 0 0 chr4 56529758 56529786 -145798561 + (CA)n Simple_repeat Simple_repeat 2 29 0 2470 81 3 3 chr4 56530220 56530529 -145797818 - AluSp SINE Alu -4 309 1 289 0 49 0 chr4 56530570 56530611 -145797736 + (CA)n Simple_repeat Simple_repeat 2 44 0 212 325 181 47 chr4 56530641 56530918 -145797429 - L2 LINE L2 -11 3261 2948 887 273 54 22 chr4 56530990 56531268 -145797079 + MLT1K LTR MaLR 153 439 -149 864 296 51 0 chr4 56531415 56531689 -145796658 + MLT1K LTR MaLR 164 451 -137 241 291 13 13 chr4 56532003 56532082 -145796265 + L3 LINE CR1 1491 1569 -8 244 239 90 0 chr4 56532422 56532489 -145795858 + L3 LINE CR1 1503 1575 -2 301 436 41 4 chr4 56532545 56532788 -145795559 - L3 LINE CR1 -27 1550 1299 249 284 80 0 chr4 56533092 56533180 -145795167 - L3 LINE CR1 -283 1294 1200 240 35 0 0 chr4 56534958 56534987 -145793360 + (CA)n Simple_repeat Simple_repeat 2 30 0 210 37 0 0 chr4 56535277 56535304 -145793043 + (CA)n Simple_repeat Simple_repeat 2 28 0 799 174 13 67 chr4 56536869 56537093 -145791254 - L1MC3 LINE L1 0 7785 7574 1833 137 27 30 chr4 56537098 56537434 -145790913 - L1MB3 LINE L1 -7 6176 5842 713 239 143 33 chr4 56537634 56537870 -145790477 - MIR SINE MIR -11 251 1 199 67 33 0 chr4 56538464 56538494 -145789853 - L2 LINE L2 -32 3240 3210 211 194 0 0 chr4 56538753 56538789 -145789558 + (TG)n Simple_repeat Simple_repeat 2 37 0 201 196 0 0 chr4 56539002 56539053 -145789294 + (TG)n Simple_repeat Simple_repeat 2 52 0 2931 156 8 4 chr4 56539127 56539601 -145788746 + MER31A LTR ERV1 1 476 -9 935 286 43 25 chr4 56539713 56540111 -145788236 + MLT1I LTR MaLR 1 405 -4 43543 50 3 2 chr4 56540301 56546447 -145781900 + L1PA4 LINE L1 1 6153 -2 1033 247 8 3 chr4 56547069 56547308 -145781039 + MIR SINE MIR 6 241 -21 370 241 62 62 chr4 56548237 56548382 -145779965 + L2 LINE L2 3159 3303 -10 370 259 114 15 chr4 56548685 56548816 -145779531 + MIR SINE MIR 119 262 0 776 175 24 0 chr4 56549197 56549323 -145779024 - FLAM_C SINE Alu -13 130 2 23 0 0 0 chr4 56549668 56549691 -145778656 + AT_rich Low_complexity Low_complexity 1 23 0 237 222 62 74 chr4 56550255 56550336 -145778011 + MER91C DNA MER1_type 31 110 -30 644 233 74 28 chr4 56550457 56550633 -145777714 - MIR SINE MIR 0 262 79 255 322 104 26 chr4 56551128 56551243 -145777104 + L2 LINE L2 3129 3252 -20 302 195 52 39 chr4 56551865 56551942 -145776405 - MIR SINE MIR -62 146 69 491 326 193 8 chr4 56552012 56552405 -145775942 - L2 LINE L2 -508 2806 2341 24 0 0 0 chr4 56553797 56553821 -145774526 + AT_rich Low_complexity Low_complexity 1 24 0 2576 59 0 3 chr4 56556948 56557254 -145771093 - AluY SINE Alu -5 306 2 301 217 29 0 chr4 56557343 56557412 -145770935 + MER116 DNA Mariner 7 77 -3 2005 84 52 3 chr4 56557485 56557771 -145770576 - AluY SINE Alu -11 300 1 211 188 80 14 chr4 56559072 56559210 -145769137 + (CACAA)n Simple_repeat Simple_repeat 3 149 0 1361 87 15 15 chr4 56559423 56559618 -145768729 + L1PA8A LINE L1 5935 6129 -2 418 322 66 0 chr4 56560419 56560571 -145767776 + MER5B DNA MER1_type 17 178 0 720 281 120 39 chr4 56560682 56561149 -145767198 + HAL1 LINE L1 2 506 -2001 216 237 68 0 chr4 56561165 56561224 -145767123 - MIR SINE MIR -74 188 126 217 311 33 33 chr4 56561913 56562003 -145766344 - MIR3 SINE MIR -13 195 106 1486 192 135 35 chr4 56562425 56562847 -145765500 + Charlie1b DNA MER1_type 60 523 0 615 230 189 23 chr4 56563164 56563381 -145764966 - MIR SINE MIR 0 262 10 31 76 0 0 chr4 56563950 56564016 -145764331 + AT_rich Low_complexity Low_complexity 1 66 0 2015 125 14 0 chr4 56564016 56564305 -145764042 + AluSx SINE Alu 1 293 -19 258 32 0 0 chr4 56564312 56564343 -145764004 + (TAA)n Simple_repeat Simple_repeat 2 32 0 320 309 93 19 chr4 56565408 56565570 -145762777 - MIR SINE MIR -56 206 33 230 133 0 22 chr4 56565896 56565941 -145762406 + (TTCC)n Simple_repeat Simple_repeat 3 46 0 1551 92 24 0 chr4 56566046 56566252 -145762095 - L1PA16 LINE L1 -4 6162 5952 638 260 105 6 chr4 56566665 56566846 -145761501 + MIR SINE MIR 51 249 -13 489 315 24 106 chr4 56568588 56568918 -145759429 + L2 LINE L2 2930 3232 -40 2297 114 67 22 chr4 56569364 56569723 -145758624 + THE1C LTR MaLR 1 375 0 377 152 105 19 chr4 56570079 56570184 -145758163 - L1MC2 LINE L1 -1 6343 6230 508 271 54 51 chr4 56570332 56570682 -145757665 - L1ME4a LINE L1 -29 6092 5742 261 271 57 41 chr4 56571582 56571704 -145756643 - L1ME4a LINE L1 0 6121 5998 22 35 0 0 chr4 56571862 56571891 -145756456 + AT_rich Low_complexity Low_complexity 1 29 0 1657 255 9 35 chr4 56572859 56573287 -145755060 + MLT1J LTR MaLR 95 511 0 22 0 0 0 chr4 56573657 56573679 -145754668 + AT_rich Low_complexity Low_complexity 1 22 0 2066 188 30 124 chr4 56574170 56574846 -145753501 + LTR9 LTR ERV1 1 612 0 1456 136 51 118 chr4 56574929 56575261 -145753086 - MER2 DNA MER2_type -20 325 16 16191 129 26 8 chr4 56575580 56577956 -145750391 - Tigger1 DNA MER2_type 0 2418 1 206 205 0 0 chr4 56579753 56579792 -145748555 + CT-rich Low_complexity Low_complexity 3 41 0 347 240 0 0 chr4 56580331 56580406 -145747941 - MIR SINE MIR -98 164 90 235 162 0 0 chr4 56580518 56580555 -145747792 + L2 LINE L2 3168 3204 -68 301 227 164 31 chr4 56581014 56581142 -145747205 - MIR SINE MIR -2 260 116 10654 58 7 36 chr4 56581801 56583226 -145745121 + SVA Other Other 1 1384 -2 23 33 0 0 chr4 56583239 56583269 -145745078 + AT_rich Low_complexity Low_complexity 1 30 0 382 211 82 68 chr4 56584138 56584285 -145744062 + MIR3 SINE MIR 7 155 -53 195 182 15 136 chr4 56584306 56584372 -145743975 - MIR3 SINE MIR -32 176 119 2824 101 0 8 chr4 56584792 56585264 -145743083 - MER1A DNA MER1_type -21 508 1 188 295 179 11 chr4 56585276 56585371 -145742976 + L2 LINE L2 3161 3271 -42 417 322 7 20 chr4 56587809 56587958 -145740389 - MIR3 SINE MIR -14 194 48 287 222 111 20 chr4 56588029 56588128 -145740219 - L2 LINE L2 -3 3269 3162 212 57 0 29 chr4 56588603 56588638 -145739709 + (TAA)n Simple_repeat Simple_repeat 1 34 0 312 183 96 87 chr4 56589790 56589905 -145738442 + L2 LINE L2 3139 3254 -18 621 225 185 15 chr4 56590117 56590317 -145738030 + MER102a DNA MER1_type 89 322 -8 669 172 15 37 chr4 56590615 56590749 -145737598 - MER1B DNA MER1_type -166 131 1 660 333 22 9 chr4 56591571 56591802 -145736545 - MIR SINE MIR -23 239 6 340 289 22 22 chr4 56592371 56592506 -145735841 - L2 LINE L2 -8 3305 3171 2677 146 31 9 chr4 56592550 56592969 -145735378 - MSTA LTR MaLR 0 428 1 236 236 18 0 chr4 56592973 56593028 -145735319 + CT-rich Low_complexity Low_complexity 1 56 0 364 292 11 0 chr4 56593029 56593118 -145735229 - L2 LINE L2 -33 3280 3191 1091 206 25 0 chr4 56593120 56593324 -145735023 - MER3 DNA MER1_type 0 209 1 213 359 13 0 chr4 56593331 56593409 -145734938 + L2 LINE L2 3228 3306 -7 560 222 157 0 chr4 56594249 56594402 -145733945 - MIR SINE MIR -4 258 82 187 357 10 10 chr4 56594557 56594655 -145733692 + L2 LINE L2 2009 2106 -1208 1757 180 24 3 chr4 56595082 56595377 -145732970 - AluJb SINE Alu -11 301 1 2232 117 0 13 chr4 56595525 56595834 -145732513 - AluSx SINE Alu -7 305 1 266 273 50 10 chr4 56595898 56595997 -145732350 - L2 LINE L2 -5 3308 3206 1793 169 3 7 chr4 56596029 56596336 -145732011 + AluJo SINE Alu 3 308 -4 1960 151 3 0 chr4 56596931 56597216 -145731131 + AluSx SINE Alu 1 286 -26 189 74 0 0 chr4 56597228 56597255 -145731092 + (CATA)n Simple_repeat Simple_repeat 3 29 0 1264 197 0 21 chr4 56597321 56597555 -145730792 + AluJb SINE Alu 6 234 -78 294 152 0 0 chr4 56597762 56597840 -145730507 + AluJb SINE Alu 237 314 0 504 219 271 29 chr4 56598235 56598445 -145729902 - MIR SINE MIR 0 262 2 545 282 115 47 chr4 56599482 56600043 -145728304 + L2 LINE L2 2647 3313 0 461 237 173 96 chr4 56600092 56600509 -145727838 + MLT1J2 LTR MaLR 1 449 -1 540 295 63 16 chr4 56600909 56601181 -145727166 + L2 LINE L2 2698 2978 -335 1186 207 109 39 chr4 56601641 56601801 -145726546 + L1ME3 LINE L1 5780 5927 -235 2173 114 7 10 chr4 56601801 56602100 -145726247 + AluSx SINE Alu 1 298 -14 1186 207 109 39 chr4 56602100 56602296 -145726051 + L1ME3 LINE L1 5927 6161 -1 381 349 33 46 chr4 56602309 56602671 -145725676 + L2 LINE L2 2727 3075 -197 2234 199 45 4 chr4 56602671 56603154 -145725193 - L1MA4 LINE L1 -11 6289 5787 381 349 33 46 chr4 56603154 56603336 -145725011 + L2 LINE L2 3075 3258 -14 1926 165 3 7 chr4 56603506 56603815 -145724532 - AluJo SINE Alu -4 308 1 558 263 105 5 chr4 56603957 56604164 -145724183 - MIR SINE MIR -5 257 32 189 316 63 13 chr4 56605739 56605818 -145722529 - MIR3 SINE MIR -14 194 112 352 310 150 0 chr4 56605847 56605947 -145722400 + L2 LINE L2 3158 3272 0 1982 158 0 0 chr4 56607065 56607376 -145720971 + AluJb SINE Alu 1 311 -1 2242 113 0 0 chr4 56607484 56607807 -145720540 + AluSx SINE Alu 1 312 0 251 278 28 0 chr4 56608145 56608217 -145720130 + GA-rich Low_complexity Low_complexity 2 75 0 236 219 192 14 chr4 56608927 56609000 -145719347 - Charlie7 DNA MER1_type -2522 90 5 2303 220 41 26 chr4 56609165 56609948 -145718399 + L1ME1 LINE L1 4804 5604 -562 2137 107 10 0 chr4 56609948 56610239 -145718108 - AluSx SINE Alu -18 294 1 2303 220 41 26 chr4 56610239 56610543 -145717804 + L1ME1 LINE L1 5604 5902 -264 25925 94 6 16 chr4 56610544 56615437 -145712910 + L1P3 LINE L1 1389 7027 -565 2205 109 0 3 chr4 56616149 56616429 -145711918 + AluSg SINE Alu 1 281 -29 180 0 0 0 chr4 56616429 56616449 -145711898 + (CA)n Simple_repeat Simple_repeat 1 20 0 2205 109 0 3 chr4 56616449 56616462 -145711885 + AluSg SINE Alu 281 293 -17 1080 248 108 49 chr4 56616991 56617501 -145710846 + L2 LINE L2 2729 3274 -39 918 266 104 3 chr4 56618295 56618592 -145709755 + L1ME LINE L1 5478 5804 -317 201 245 0 0 chr4 56618663 56618716 -145709631 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 189 254 119 0 chr4 56619772 56619839 -145708508 + L2 LINE L2 2440 2514 -800 495 178 59 0 chr4 56619932 56620033 -145708314 + MLT1J1 LTR MaLR 6 112 -334 2046 122 3 20 chr4 56620634 56620938 -145707409 - AluSx SINE Alu -13 299 1 1059 240 132 39 chr4 56621737 56622146 -145706201 + L2 LINE L2 27 473 -2841 494 316 47 5 chr4 56622518 56622733 -145705614 - MER102a DNA MER1_type 0 330 107 1796 166 7 0 chr4 56622736 56623013 -145705334 + AluJo SINE Alu 1 279 -33 746 179 23 0 chr4 56623014 56623187 -145705160 + GA-rich Low_complexity Low_complexity 1 177 0 764 253 6 0 chr4 56623251 56623409 -145704938 + MIR SINE MIR 7 165 -97 198 329 140 28 chr4 56623614 56623757 -145704590 - L2 LINE L2 -160 3112 2954 648 184 0 16 chr4 56623762 56623887 -145704460 - LTR33 LTR ERVL 0 521 399 392 195 30 146 chr4 56623974 56624138 -145704209 - LTR33 LTR ERVL -339 182 38 419 230 42 61 chr4 56625073 56625238 -145703109 + MER103 DNA DNA 3 164 -2 285 288 0 0 chr4 56626332 56626398 -145701949 + L2 LINE L2 3248 3313 0 2250 112 3 3 chr4 56626974 56627286 -145701061 + AluSx SINE Alu 1 312 0 389 250 9 46 chr4 56628073 56628181 -145700166 + L2 LINE L2 3173 3276 -37 20154 56 4 0 chr4 56628329 56630845 -145697502 - L1P LINE L1 -3122 3024 499 21 0 0 0 chr4 56631835 56631856 -145696491 + AT_rich Low_complexity Low_complexity 1 21 0 1103 99 7 0 chr4 56632256 56632397 -145695950 - AluSp SINE Alu -171 142 1 2386 100 0 3 chr4 56632412 56632723 -145695624 - AluSg SINE Alu 0 310 1 635 190 0 9 chr4 56632731 56632847 -145695500 + MLT-int LTR MaLR 432 546 -1189 228 140 0 60 chr4 56632848 56632898 -145695449 - Charlie1 DNA MER1_type -2271 490 444 635 182 0 76 chr4 56632900 56633032 -145695315 + MLT-int LTR MaLR 618 739 -996 2232 223 24 15 chr4 56633136 56633602 -145694745 + MLT-int LTR MaLR 1262 1731 -4 1264 197 0 21 chr4 56633753 56633987 -145694360 - AluJb SINE Alu -78 234 6 189 74 0 0 chr4 56634053 56634080 -145694267 + (TATG)n Simple_repeat Simple_repeat 3 29 0 2030 113 3 21 chr4 56634092 56634383 -145693964 - AluSx SINE Alu -26 286 1 851 276 86 3 chr4 56634383 56634687 -145693660 + L1ME1 LINE L1 5574 5902 -264 * 3286 91 55 38 chr4 56634684 56635189 -145693158 + L1PA4 LINE L1 1045 1558 -4903 17807 44 7 2 chr4 56635289 56638137 -145690210 + L1PA4 LINE L1 3619 6468 -2 492 226 83 36 chr4 56688374 56688542 -145639805 + MER104 DNA MER2_type 1 176 -4 1904 106 40 4 chr4 56689003 56689277 -145639070 + AluSp SINE Alu 1 284 -29 513 139 0 0 chr4 56689495 56689567 -145638780 - AluS SINE Alu -13 296 225 1142 84 12 18 chr4 56689567 56689733 -145638614 - AluSq SINE Alu -131 182 18 1009 254 129 29 chr4 56690072 56690526 -145637821 - L2 LINE L2 -19 3294 2781 418 54 0 0 chr4 56690899 56690955 -145637392 - MSTB LTR MaLR -331 95 40 879 269 31 46 chr4 56691070 56691419 -145636928 + L1ME LINE L1 5303 5646 -524 290 73 73 0 chr4 56691423 56691464 -145636883 - MSTB LTR MaLR -382 44 1 3414 196 30 7 chr4 56691464 56692137 -145636210 - MSTB-int LTR MaLR 0 1651 964 456 248 59 98 chr4 56693297 56693604 -145634743 - HAL1 LINE L1 0 2507 2213 314 272 111 33 chr4 56694027 56694207 -145634140 + L1M4 LINE L1 3084 3277 -2869 12201 40 4 3 chr4 56694417 56695914 -145632433 - L1P LINE L1 -1454 4692 3195 27 49 0 0 chr4 56696172 56696213 -145632134 + AT_rich Low_complexity Low_complexity 1 41 0 352 326 37 32 chr4 56696532 56696719 -145631628 + L2 LINE L2 2874 3061 -211 967 255 108 53 chr4 56697009 56697165 -145631182 + MLT1H1 LTR MaLR 11 157 -398 2296 98 3 0 chr4 56697165 56697460 -145630887 + AluSg SINE Alu 1 296 -14 967 255 108 53 chr4 56697460 56697664 -145630683 + MLT1H1 LTR MaLR 157 391 -164 21 57 0 0 chr4 56697810 56697845 -145630502 + GC_rich Low_complexity Low_complexity 1 35 0 820 188 94 0 chr4 56698368 56698506 -145629841 - FAM SINE Alu -33 152 2 5993 197 4 26 chr4 56699305 56700822 -145627525 - L1P LINE L1 -1989 4157 2747 405 59 0 0 chr4 56701003 56701054 -145627293 + L1P LINE L1 1808 1858 -4288 7746 45 3 6 chr4 56701060 56702506 -145625841 - L1PA4 LINE L1 0 6155 4708 220 145 33 53 chr4 56702511 56702663 -145625684 + G-rich Low_complexity Low_complexity 5 153 0 278 212 34 8 chr4 56702746 56702864 -145625483 + (GGGTG)n Simple_repeat Simple_repeat 1 121 0 1499 115 36 36 chr4 56703171 56703424 -145624923 + MLT2A1 LTR ERVL 125 377 -67 244 237 0 26 chr4 56703435 56703511 -145624836 + (TATATG)n Simple_repeat Simple_repeat 3 76 0 405 54 0 18 chr4 56703511 56703567 -145624780 + MLT2A1 LTR ERVL 390 444 0 31 44 0 0 chr4 56703763 56703808 -145624539 + AT_rich Low_complexity Low_complexity 1 45 0 437 0 19 0 chr4 56703865 56703918 -145624429 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 6017 45 5 12 chr4 56703918 56704659 -145623688 - SVA Other Other -23 1363 628 308 242 55 0 chr4 56704961 56705052 -145623295 + MER3 DNA MER1_type 29 124 -85 2232 85 4 0 chr4 56705067 56705443 -145622904 - AluY SINE Alu 0 378 2 5677 65 49 35 chr4 56705455 56706365 -145621982 - SVA Other Other 0 1386 492 933 246 88 11 chr4 56706790 56707050 -145621297 - L1ME3 LINE L1 -9 6153 5874 617 293 79 0 chr4 56707057 56707310 -145621037 - L1ME3 LINE L1 -345 5825 5553 2177 116 3 0 chr4 56707328 56707630 -145620717 - AluSg SINE Alu -7 303 1 362 311 53 53 chr4 56707985 56708194 -145620153 + MER102b DNA MER1_type 104 312 -29 609 125 0 29 chr4 56708371 56708475 -145619872 + L1MD3 LINE L1 7895 7995 0 808 210 50 109 chr4 56709398 56709808 -145618539 + MLT1A2 LTR MaLR 1 348 -26 451 250 99 71 chr4 56709873 56710164 -145618183 - MER21B LTR ERV1 -258 347 17 192 200 0 0 chr4 56710864 56710909 -145617438 + (CA)n Simple_repeat Simple_repeat 2 46 0 7477 57 3 0 chr4 56711265 56712326 -145616021 - L1PA5 LINE L1 -1 6153 5086 2119 120 0 0 chr4 56712361 56712688 -145615659 + AluSx SINE Alu 1 327 0 1188 220 121 22 chr4 56713101 56713482 -145614865 + L1ME3A LINE L1 5748 6165 -5 1872 5 0 0 chr4 56714634 56714841 -145613506 - L1P1 LINE L1 -517 5638 5432 1576 45 5 10 chr4 56714841 56715040 -145613307 + L1PA3 LINE L1 5952 6152 -3 436 316 111 24 chr4 56715158 56715446 -145612901 + L2 LINE L2 2295 2607 -707 257 364 128 72 chr4 56715643 56715948 -145612399 + L2 LINE L2 2924 3245 -27 407 280 127 7 chr4 56716030 56716180 -145612167 - MIR SINE MIR -65 197 30 1114 251 102 18 chr4 56716939 56717322 -145611025 - L2 LINE L2 -457 2857 2443 22 0 0 0 chr4 56718183 56718205 -145610142 + AT_rich Low_complexity Low_complexity 1 22 0 471 269 192 5 chr4 56718990 56719198 -145609149 - MIR SINE MIR -12 250 4 7008 204 16 39 chr4 56720297 56722589 -145605758 - L1PA13 LINE L1 -3551 3246 1039 1845 242 41 30 chr4 56722823 56723582 -145604765 - MSTB-int LTR MaLR -822 829 3 2504 153 36 2 chr4 56723584 56723996 -145604351 - MSTB LTR MaLR 0 426 1 1994 189 62 28 chr4 56724068 56724534 -145603813 + MLT1D LTR MaLR 24 505 0 1166 199 114 47 chr4 56724617 56724959 -145603388 + MLT1A1 LTR MaLR 1 365 0 1161 200 37 87 chr4 56725218 56725518 -145602829 + Charlie1a DNA MER1_type 1 285 -1170 2001 110 6 57 chr4 56725520 56725837 -145602510 + AluSg SINE Alu 1 301 -9 5715 29 0 0 chr4 56725938 56726618 -145601729 - L1P LINE L1 -1608 4538 3859 3467 263 103 36 chr4 56726847 56728521 -145599826 + HAL1 LINE L1 89 1873 -634 250 336 0 35 chr4 56728606 56728749 -145599598 + HAL1 LINE L1 1702 1839 -668 644 57 11 11 chr4 56728906 56728994 -145599353 + AluY SINE Alu 32 119 -192 277 260 154 0 chr4 56729139 56729262 -145599085 + HAL1 LINE L1 1996 2137 -370 1703 217 3 12 chr4 56729282 56729623 -145598724 + Tigger6 DNA MER2_type 67 404 -679 * 2065 161 91 17 chr4 56729600 56730060 -145598287 + Tigger6 DNA MER2_type 1097 1590 -7 1302 181 18 43 chr4 56730127 56730408 -145597939 - MSTD LTR MaLR 0 396 123 662 176 23 0 chr4 56730768 56730899 -145597448 - Charlie1b DNA MER1_type 0 523 390 3146 148 33 31 chr4 56730919 56731439 -145596908 - MER21A LTR ERV1 -7 924 401 2110 119 3 3 chr4 56731439 56731733 -145596614 - AluSc SINE Alu -15 294 1 3146 148 33 31 chr4 56731733 56731758 -145596589 - MER21A LTR ERV1 -530 401 378 1372 122 105 0 chr4 56731764 56732002 -145596345 - MER21A LTR ERV1 -666 265 3 * 1824 176 35 11 chr4 56732002 56732376 -145595971 - Charlie1b DNA MER1_type -140 383 1 199 308 145 43 chr4 56732984 56733101 -145595246 + L2 LINE L2 3136 3264 -8 347 244 26 0 chr4 56733573 56733651 -145594696 - MER81 DNA DNA 0 114 35 1616 140 21 35 chr4 56734184 56734470 -145593877 + AluSq SINE Alu 1 282 -31 192 310 62 26 chr4 56734756 56734869 -145593478 + MIR SINE MIR 95 211 -51 1869 143 26 10 chr4 56735253 56735560 -145592787 + AluSx SINE Alu 1 312 0 188 219 34 101 chr4 56736222 56736341 -145592006 + L2 LINE L2 2782 2892 -422 * 610 263 45 62 chr4 56736328 56736571 -145591776 + L2 LINE L2 3075 3313 0 1575 185 10 7 chr4 56736643 56737035 -145591312 - L1MB3 LINE L1 0 6183 5645 268 308 26 43 chr4 56737818 56737935 -145590412 + L2 LINE L2 2950 3064 -208 2229 119 0 0 chr4 56738243 56738538 -145589809 + AluSx SINE Alu 3 297 -15 1114 149 11 0 chr4 56738538 56738713 -145589634 + AluSg/x SINE Alu 135 311 -1 338 94 19 0 chr4 56739349 56739402 -145588945 + L1MA9 LINE L1 6254 6307 -5 427 356 43 0 chr4 56739545 56739708 -145588639 - MIR SINE MIR -86 176 7 232 325 50 67 chr4 56740030 56740150 -145588197 - L3b LINE CR1 -263 1320 1203 188 327 0 0 chr4 56740191 56740243 -145588104 - L2 LINE L2 -4 3268 3217 371 272 149 40 chr4 56740421 56740724 -145587623 - MER102a DNA MER1_type 0 330 5 2205 116 0 0 chr4 56741302 56741595 -145586752 + AluSx SINE Alu 3 295 -17 568 309 43 16 chr4 56741820 56742008 -145586339 + MIR SINE MIR 20 212 -50 239 231 33 22 chr4 56742047 56742138 -145586209 + T-rich Low_complexity Low_complexity 1 92 0 888 291 51 32 chr4 56742660 56743088 -145585259 + MLT1J LTR MaLR 49 424 -22 498 258 8 8 chr4 56744548 56744668 -145583679 - MIR SINE MIR -10 252 133 284 311 52 121 chr4 56744674 56744963 -145583384 + L2 LINE L2 2995 3263 -9 324 333 31 0 chr4 56745320 56745449 -145582898 + MIR SINE MIR 120 252 -10 342 240 66 16 chr4 56745750 56745871 -145582476 + L1ME4a LINE L1 5491 5617 -504 436 280 180 51 chr4 56745917 56746306 -145582041 + L1ME4a LINE L1 5601 6039 -82 414 0 0 0 chr4 56746905 56746951 -145581396 + (TG)n Simple_repeat Simple_repeat 2 47 0 1005 334 65 28 chr4 56747340 56747801 -145580546 + MLT1K LTR MaLR 2 479 -109 1193 158 16 53 chr4 56747909 56748218 -145580129 - MLT1A2 LTR MaLR 0 374 1 220 281 24 24 chr4 56748346 56748428 -145579919 + L2 LINE L2 3191 3272 0 13565 194 31 15 chr4 56748582 56750875 -145577472 - L1M2 LINE L1 -743 6822 4567 296 102 0 17 chr4 56750875 56750934 -145577413 + (TTTA)n Simple_repeat Simple_repeat 4 61 0 2066 118 7 3 chr4 56750943 56751231 -145577116 - AluSc SINE Alu -20 289 1 13565 194 31 15 chr4 56751231 56752085 -145576262 - L1M2 LINE L1 -3005 4560 3755 417 187 0 99 chr4 56752085 56752176 -145576171 - Tigger5 DNA MER2_type 0 2323 2242 * 433 187 13 0 chr4 56752166 56752241 -145576106 + Tigger5 DNA MER2_type 2242 2317 -6 389 213 53 0 chr4 56752243 56752318 -145576029 - Tigger5 DNA MER2_type -2244 79 1 1239 202 22 7 chr4 56752319 56752767 -145575580 - L1M2 LINE L1 -3810 3755 3298 523 186 44 0 chr4 56753196 56753309 -145575038 + MLT1K LTR MaLR 436 553 -2 421 279 111 56 chr4 56753311 56753956 -145574391 - L1ME4a LINE L1 -97 6024 5340 431 302 89 32 chr4 56754128 56754376 -145573971 - MIR SINE MIR 0 262 1 560 224 9 9 chr4 56754524 56754640 -145573707 - FLAM_C SINE Alu -15 118 3 257 315 171 7 chr4 56755121 56755267 -145573080 - L2 LINE L2 -15 3298 3129 768 288 56 13 chr4 56756491 56756724 -145571623 + MIR SINE MIR 3 245 -17 12193 28 2 4 chr4 56757096 56759330 -145569017 + L1PA4 LINE L1 3921 6155 0 402 326 17 33 chr4 56759772 56759953 -145568394 + L2 LINE L2 3136 3313 0 25 0 0 0 chr4 56763096 56763121 -145565226 + AT_rich Low_complexity Low_complexity 1 25 0 1188 278 54 12 chr4 56763310 56763720 -145564627 - MLT1J LTR MaLR -2 509 83 230 321 38 0 chr4 56763877 56763983 -145564364 + HAL1 LINE L1 1436 1545 -962 21 82 0 0 chr4 56764807 56764856 -145563491 + AT_rich Low_complexity Low_complexity 1 49 0 270 301 117 29 chr4 56765218 56765321 -145563026 + MIR3 SINE MIR 86 197 -11 2143 114 13 3 chr4 56766125 56766431 -145561916 + AluSq SINE Alu 5 313 0 239 224 15 30 chr4 56766482 56766549 -145561798 + CT-rich Low_complexity Low_complexity 1 66 0 370 296 61 103 chr4 56766564 56766875 -145561472 - L2 LINE L2 -3 3269 2972 246 62 0 0 chr4 56766882 56766914 -145561433 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 24154 55 8 3 chr4 56766980 56770198 -145558149 + L1P LINE L1 1 3235 -2911 886 95 0 14 chr4 56770298 56770446 -145557901 - Ricksha DNA DNA -1662 384 239 445 225 63 0 chr4 56770458 56770569 -145557778 - Ricksha DNA DNA -1927 119 2 303 28 0 0 chr4 56772050 56772086 -145556261 + (CA)n Simple_repeat Simple_repeat 2 37 0 802 141 0 37 chr4 56772423 56772558 -145555789 + FLAM_C SINE Alu 1 130 -3 446 240 11 11 chr4 56772574 56772753 -145555594 + (TA)n Simple_repeat Simple_repeat 2 180 0 205 50 75 0 chr4 56772785 56772825 -145555522 + (TA)n Simple_repeat Simple_repeat 2 44 0 1734 140 68 16 chr4 56773119 56773441 -145554906 + MER1B DNA MER1_type 1 339 0 867 182 69 25 chr4 56774762 56774912 -145553435 - L2 LINE L2 -2 3311 3148 1556 139 73 45 chr4 56774912 56775242 -145553105 + MER44D DNA MER2_type 1 609 0 867 182 69 25 chr4 56775242 56775294 -145553053 - L2 LINE L2 -165 3148 3100 517 163 0 0 chr4 56775338 56775418 -145552929 + FRAM SINE Alu 75 154 -22 1368 139 45 14 chr4 56775939 56776162 -145552185 + MER30 DNA MER1_type 1 230 0 22 70 0 0 chr4 56776420 56776463 -145551884 + AT_rich Low_complexity Low_complexity 1 43 0 1678 159 54 4 chr4 56777105 56777381 -145550966 + AluJo SINE Alu 1 290 -22 2188 183 175 120 chr4 56777411 56777917 -145550430 + L1MC3 LINE L1 6568 7045 -740 440 190 9 78 chr4 56777917 56778033 -145550314 + MLT1F1 LTR MaLR 35 142 -425 2188 183 175 120 chr4 56778033 56778556 -145549791 + L1MC3 LINE L1 7045 7775 -10 261 290 0 0 chr4 56778556 56778618 -145549729 + GA-rich Low_complexity Low_complexity 1 62 0 267 304 70 44 chr4 56778642 56778800 -145549547 + L3 LINE CR1 1371 1532 -45 671 236 0 29 chr4 56778967 56779107 -145549240 + MIR SINE MIR 16 151 -111 1373 171 45 4 chr4 56780084 56780353 -145547994 - MSTB LTR MaLR -1 425 146 594 219 49 60 chr4 56780618 56780801 -145547546 - L2 LINE L2 -9 3304 3124 555 271 29 33 chr4 56780897 56781107 -145547240 - L2 LINE L2 -175 3138 2930 38985 64 6 1 chr4 56781319 56786647 -145541700 + L1P LINE L1 1 5359 -787 381 200 40 80 chr4 56787198 56787323 -145541024 - MER5A DNA MER1_type -53 136 17 488 171 23 0 chr4 56788313 56788401 -145539946 - MIR SINE MIR -88 174 85 204 331 16 48 chr4 56788509 56788633 -145539714 - L2 LINE L2 -211 3061 2942 2041 116 35 3 chr4 56789719 56790003 -145538344 - AluSx SINE Alu -15 297 5 382 287 156 106 chr4 56790756 56791160 -145537187 - L2 LINE L2 -1 3271 2848 180 0 0 0 chr4 56791442 56791462 -145536885 + (A)n Simple_repeat Simple_repeat 1 20 0 282 116 0 0 chr4 56792611 56792654 -145535693 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 21 71 0 0 chr4 56792796 56792838 -145535509 + AT_rich Low_complexity Low_complexity 1 42 0 232 225 0 38 chr4 56793318 56793398 -145534949 + L1ME4a LINE L1 5982 6058 -63 455 161 0 0 chr4 56793414 56793495 -145534852 + L1PB4 LINE L1 6069 6149 -7 24 0 0 0 chr4 56794625 56794649 -145533698 + AT_rich Low_complexity Low_complexity 1 24 0 501 250 95 12 chr4 56794969 56795137 -145533210 - MIR3 SINE MIR -6 202 21 192 40 0 0 chr4 56795839 56795864 -145532483 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2606 36 0 7 chr4 56796435 56796741 -145531606 + AluY SINE Alu 1 304 -7 493 227 0 0 chr4 56797274 56797371 -145530976 - L1MB1 LINE L1 -401 5767 5671 1970 127 32 40 chr4 56797372 56797750 -145530597 + L1MB1 LINE L1 5793 6167 -1 250 303 158 30 chr4 56798666 56798831 -145529516 + Charlie8 DNA MER1_type 20 205 -2212 2220 81 7 30 chr4 56798843 56799140 -145529207 + AluSc SINE Alu 1 290 -19 259 288 15 0 chr4 56799247 56799313 -145529034 + Charlie8 DNA MER1_type 2351 2417 0 342 332 34 83 chr4 56799597 56799802 -145528545 + MIR3 SINE MIR 10 204 -4 238 267 3 28 chr4 56800102 56800188 -145528159 - MIR SINE MIR -120 88 3 194 273 18 0 chr4 56800213 56800268 -145528079 + MIR SINE MIR 203 258 -4 21 0 0 0 chr4 56800327 56800348 -145527999 + AT_rich Low_complexity Low_complexity 1 21 0 257 271 90 48 chr4 56800428 56800594 -145527753 + MLT1J LTR MaLR 1 173 -338 5685 68 55 17 chr4 56801820 56802653 -145525694 - SVA Other Other -520 866 2 430 131 42 6 chr4 56802687 56802757 -145525590 + MSTA LTR MaLR 347 418 -8 536 132 33 0 chr4 56802757 56802848 -145525499 + L1PA13 LINE L1 6051 6144 -19 13860 147 51 9 chr4 56803920 56804283 -145524064 - L1PB1 LINE L1 -1 6866 6520 417 86 0 0 chr4 56804283 56804341 -145524006 + (TA)n Simple_repeat Simple_repeat 1 58 0 13860 147 51 9 chr4 56804341 56806935 -145521412 - L1PB1 LINE L1 -347 6520 4036 192 97 0 0 chr4 56806935 56806966 -145521381 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 13860 147 51 9 chr4 56806966 56809992 -145518355 - L1PB1 LINE L1 -2831 4036 634 966 152 49 0 chr4 56809995 56810179 -145518168 - L1PB1 LINE L1 -6668 195 3 830 93 0 0 chr4 56811205 56811312 -145517035 - U6 snRNA snRNA 0 107 1 1628 131 94 36 chr4 56811476 56811773 -145516574 - AluJb SINE Alu 0 312 1 308 264 85 0 chr4 56812044 56812150 -145516197 - MIR SINE MIR 0 262 148 365 165 114 0 chr4 56812205 56812284 -145516063 - MIR SINE MIR -59 203 116 769 188 94 0 chr4 56813350 56813488 -145514859 - FAM SINE Alu -33 152 2 628 199 14 76 chr4 56814642 56814782 -145513565 + L1MC4 LINE L1 6444 6577 -1465 1854 164 3 26 chr4 56814782 56815087 -145513260 + AluJb SINE Alu 1 298 -14 628 199 14 76 chr4 56815087 56815122 -145513225 + L1MC4 LINE L1 6577 6650 -1392 206 200 0 0 chr4 56815122 56815157 -145513190 + (CAGAGA)n Simple_repeat Simple_repeat 4 38 0 24 0 0 0 chr4 56815283 56815307 -145513040 + AT_rich Low_complexity Low_complexity 1 24 0 330 292 56 41 chr4 56815360 56815489 -145512858 + L1ME3A LINE L1 3569 3703 -2443 2016 141 10 3 chr4 56815489 56815787 -145512560 + AluSx SINE Alu 1 300 -12 330 292 56 41 chr4 56815787 56815852 -145512495 + L1ME3A LINE L1 3703 3766 -2380 192 231 0 0 chr4 56815856 56815908 -145512439 + (TG)n Simple_repeat Simple_repeat 1 52 0 722 294 53 42 chr4 56815909 56816534 -145511813 + L1ME3A LINE L1 3793 4424 -1722 249 205 133 0 chr4 56816670 56816753 -145511594 - MLT1L LTR MaLR -17 598 505 350 289 85 78 chr4 56816973 56817027 -145511320 + L1ME3A LINE L1 5667 5719 -451 304 77 39 0 chr4 56817027 56817079 -145511268 + (CA)n Simple_repeat Simple_repeat 1 54 0 350 289 85 78 chr4 56817079 56817181 -145511166 + L1ME3A LINE L1 5719 5819 -351 2117 120 0 0 chr4 56817181 56817508 -145510839 - AluSx SINE Alu 0 327 1 350 289 85 78 chr4 56817508 56817543 -145510804 + L1ME3A LINE L1 5819 5852 -318 7424 30 6 3 chr4 56817543 56818610 -145509737 + L1PA4 LINE L1 5086 6154 -1 350 289 85 78 chr4 56818610 56818709 -145509638 + L1ME3A LINE L1 5852 5962 -208 21 57 0 0 chr4 56818984 56819019 -145509328 + AT_rich Low_complexity Low_complexity 1 35 0 243 329 51 0 chr4 56819923 56820002 -145508345 - MIR SINE MIR -105 157 75 2151 214 20 51 chr4 56821256 56821764 -145506583 - L1ME1 LINE L1 -5 6161 5672 225 0 0 0 chr4 56821764 56821789 -145506558 + (TG)n Simple_repeat Simple_repeat 2 26 0 2151 214 20 51 chr4 56821789 56821868 -145506479 - L1ME1 LINE L1 -494 5672 5592 1750 124 0 0 chr4 56822204 56822469 -145505878 - L1PA13 LINE L1 -2 6161 5897 1560 173 43 15 chr4 56822469 56822793 -145505554 - L1ME1 LINE L1 -557 5609 5277 256 256 171 17 chr4 56822808 56822925 -145505422 - L2 LINE L2 0 3313 3179 222 281 37 24 chr4 56823244 56823326 -145505021 + L2 LINE L2 2765 2847 -467 2340 72 3 3 chr4 56823516 56823823 -145504524 + AluY SINE Alu 1 307 -4 2064 120 27 0 chr4 56823831 56824130 -145504217 + AluSx SINE Alu 2 308 -4 1087 122 83 0 chr4 56824133 56824289 -145504058 + AluSg/x SINE Alu 129 297 -15 23 0 0 0 chr4 56824656 56824679 -145503668 + AT_rich Low_complexity Low_complexity 1 23 0 830 168 44 0 chr4 56825024 56825161 -145503186 - FLAM_C SINE Alu 0 143 1 2054 139 35 14 chr4 56825397 56825764 -145502583 - THE1C LTR MaLR 0 375 1 2075 152 0 0 chr4 56825979 56826282 -145502065 + AluSx SINE Alu 1 303 -9 260 212 44 18 chr4 56826431 56826544 -145501803 - Tigger8 DNA MER2_type -327 339 224 282 117 17 0 chr4 56827853 56827913 -145500434 - L1PA15 LINE L1 -6 6159 6099 416 290 85 53 chr4 56827927 56828210 -145500137 - HAL1 LINE L1 -1155 1352 1061 943 137 25 0 chr4 56828212 56828373 -145499974 - L1MB7 LINE L1 0 6184 6020 940 239 31 4 chr4 56828718 56828978 -145499369 + L1 LINE L1 3833 4099 -2047 23140 93 6 6 chr4 56828987 56833201 -145495146 - L1PA7 LINE L1 -13 6141 1846 32442 49 0 1 chr4 56833208 56837431 -145490916 + L1P LINE L1 7 4226 -1920 241 345 55 48 chr4 56837906 56838071 -145490276 + L3b LINE CR1 1272 1437 -146 6356 227 31 78 chr4 56838804 56841240 -145487107 + L1MB4 LINE L1 13 2562 -4605 805 158 0 27 chr4 56841240 56841386 -145486961 + FLAM_C SINE Alu 1 142 -1 6356 227 31 78 chr4 56841386 56842365 -145485982 + L1MB4 LINE L1 2562 3585 -3582 2289 108 0 3 chr4 56842365 56842679 -145485668 + AluSq SINE Alu 1 313 0 6356 227 31 78 chr4 56842679 56844586 -145483761 + L1MB4 LINE L1 3585 4868 -2299 5983 107 3 46 chr4 56844583 56846139 -145482208 + L1MB4 LINE L1 5336 6809 -392 * 1537 95 0 0 chr4 56846139 56846331 -145482016 + L1PA8 LINE L1 5961 6171 -1 5983 107 3 46 chr4 56846331 56846392 -145481955 + L1MB4 LINE L1 6809 6871 -330 1408 78 0 0 chr4 56846362 56846554 -145481793 + L1PA10 LINE L1 6790 6981 -208 * 6229 38 12 7 chr4 56846670 56847445 -145480902 + SVA Other Other 635 1386 0 2221 85 4 0 chr4 56847457 56847833 -145480514 + AluY SINE Alu 2 378 0 379 228 30 0 chr4 56847847 56847948 -145480399 - MER3 DNA MER1_type -85 124 21 1033 79 0 0 chr4 56847988 56848114 -145480233 + AluSq/x SINE Alu 1 126 -187 1560 138 28 49 chr4 56848145 56848470 -145479877 - THE1C LTR MaLR -57 318 1 1497 122 4 0 chr4 56848473 56848710 -145479637 - L1PA12 LINE L1 -114 6054 5817 21653 41 20 2 chr4 56848724 56854717 -145473630 - L1PA3 LINE L1 0 6155 1 2854 9 0 6 chr4 56854733 56855049 -145473298 - AluYb8 SINE Alu -4 314 1 4502 150 17 74 chr4 56855049 56856625 -145471722 - L1PA12 LINE L1 -331 5830 4297 9744 40 3 0 chr4 56856725 56858693 -145469654 + L1PA4 LINE L1 4183 6155 0 4857 159 5 26 chr4 56858699 56859679 -145468668 - L1PA12 LINE L1 -4288 1858 900 321 123 108 0 chr4 56859675 56859740 -145468607 - L1MB1 LINE L1 -331 5858 5787 * 25 0 0 0 chr4 56859760 56859785 -145468562 + AT_rich Low_complexity Low_complexity 1 25 0 1196 168 22 0 chr4 56859785 56860017 -145468330 - L1MB1 LINE L1 -1052 5094 4858 1110 143 18 117 chr4 56860082 56860424 -145467923 + Charlie1 DNA MER1_type 2449 2756 -5 25 0 0 0 chr4 56861062 56861087 -145467260 + AT_rich Low_complexity Low_complexity 1 25 0 237 179 0 0 chr4 56861509 56861548 -145466799 - LTR33 LTR ERVL 0 521 483 * 583 259 97 9 chr4 56861521 56861749 -145466598 - LTR33 LTR ERVL -262 259 12 1007 220 368 7 chr4 56862085 56862667 -145465680 - LTR50 LTR ERVL -3 792 1 361 339 23 18 chr4 56862667 56862838 -145465509 + MIR SINE MIR 85 256 -6 235 102 20 20 chr4 56863045 56863094 -145465253 + (TC)n Simple_repeat Simple_repeat 2 50 0 2378 73 0 13 chr4 56863429 56863731 -145464616 + AluSg SINE Alu 1 298 -12 421 323 63 0 chr4 56863769 56863927 -145464420 + L3 LINE CR1 1056 1223 -354 200 333 0 18 chr4 56864541 56864598 -145463749 - MIR SINE MIR -181 81 26 208 335 160 16 chr4 56864669 56864857 -145463490 - L2 LINE L2 -1345 1969 1755 21 0 0 0 chr4 56865942 56865963 -145462384 + AT_rich Low_complexity Low_complexity 1 21 0 2232 103 0 0 chr4 56866224 56866514 -145461833 - AluSc SINE Alu -19 290 1 200 143 24 0 chr4 56866641 56866683 -145461664 + GA-rich Low_complexity Low_complexity 1 43 0 829 285 56 0 chr4 56866902 56867116 -145461231 + MIR SINE MIR 34 259 -3 34 24 0 0 chr4 56867498 56867539 -145460808 + AT_rich Low_complexity Low_complexity 1 41 0 199 313 78 16 chr4 56870480 56870544 -145457803 + MIR SINE MIR 7 74 -188 814 248 84 61 chr4 56870603 56870946 -145457401 + L2 LINE L2 2961 3311 -2 310 259 122 15 chr4 56870943 56871074 -145457273 + MIR SINE MIR 68 212 -50 * 2178 122 3 0 chr4 56871415 56871711 -145456636 + AluSg SINE Alu 1 297 -13 699 273 83 5 chr4 56872279 56872495 -145455852 + MIR SINE MIR 9 241 -21 201 161 0 0 chr4 56872497 56872528 -145455819 + (TAG)n Simple_repeat Simple_repeat 2 32 0 291 292 88 71 chr4 56873054 56873294 -145455053 - L3b LINE CR1 -70 1513 1270 825 122 8 0 chr4 56874119 56874242 -145454105 - AluSg/x SINE Alu -11 299 176 1643 188 56 0 chr4 56875623 56875910 -145452437 - AluJo SINE Alu -7 305 3 1140 268 151 7 chr4 56876158 56876655 -145451692 - L2 LINE L2 0 3313 2692 414 229 76 17 chr4 56876786 56876904 -145451443 - L2 LINE L2 -1426 1888 1764 1938 153 0 23 chr4 56877185 56877485 -145450862 + AluSx SINE Alu 1 293 -19 916 217 35 15 chr4 56877927 56878125 -145450222 + MIR SINE MIR 19 220 -42 1795 139 32 18 chr4 56878312 56878414 -145449933 + AluSx SINE Alu 21 120 -192 195 69 0 0 chr4 56878414 56878443 -145449904 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1795 139 32 18 chr4 56878443 56878620 -145449727 + AluSx SINE Alu 120 304 -8 519 250 0 0 chr4 56879030 56879130 -145449217 + L2 LINE L2 3205 3304 -9 21 0 0 0 chr4 56879365 56879386 -145448961 + AT_rich Low_complexity Low_complexity 1 21 0 650 165 9 9 chr4 56879505 56879620 -145448727 + FLAM_C SINE Alu 16 130 -13 382 221 39 10 chr4 56880277 56880381 -145447966 + L1MC4 LINE L1 7787 7893 -149 24 0 0 0 chr4 56880431 56880455 -145447892 + AT_rich Low_complexity Low_complexity 1 24 0 210 346 96 10 chr4 56881112 56881216 -145447131 + MIR SINE MIR 20 132 -130 1670 191 33 7 chr4 56881216 56881541 -145446806 - AluJo SINE Alu 0 312 1 986 246 149 17 chr4 56881662 56881764 -145446583 + L1ME1 LINE L1 5382 5469 -697 1835 155 12 81 chr4 56881764 56882183 -145446164 - MLT1B LTR MaLR 0 390 1 986 246 149 17 chr4 56882183 56882555 -145445792 + L1ME1 LINE L1 5469 5919 -247 1081 201 118 35 chr4 56882640 56882954 -145445393 + MLT1D LTR MaLR 139 478 -27 611 308 82 19 chr4 56883072 56883390 -145444957 - L2 LINE L2 -1661 1653 1316 1635 170 22 62 chr4 56883444 56883767 -145444580 - AluJo SINE Alu -2 310 1 2300 31 42 21 chr4 56883874 56884163 -145444184 + AluY SINE Alu 5 299 -12 383 364 98 7 chr4 56885226 56885369 -145442978 + L2 LINE L2 3116 3271 -1 182 368 118 13 chr4 56886814 56887042 -145441305 + L2 LINE L2 2447 2698 -616 273 259 71 35 chr4 56887508 56887593 -145440754 + L2 LINE L2 3182 3269 -3 2313 98 0 0 chr4 56887609 56887905 -145440442 + AluSx SINE Alu 1 296 -16 447 347 54 60 chr4 56888148 56888856 -145439491 - L2 LINE L2 -215 3057 2340 2349 158 12 65 chr4 56888873 56889368 -145438979 - L1MB2 LINE L1 -9 6162 5694 438 300 75 5 chr4 56889730 56889930 -145438417 + MLT1J LTR MaLR 1 214 -297 1081 174 13 30 chr4 56889952 56890182 -145438165 - L1MB2 LINE L1 -498 5673 5448 194 325 165 21 chr4 56890182 56890425 -145437922 - L2 LINE L2 -968 2346 2069 1828 156 3 52 chr4 56890727 56890905 -145437442 - AluJo SINE Alu -1 311 155 2246 101 0 7 chr4 56890905 56891203 -145437144 - AluY SINE Alu -15 296 1 1828 156 3 52 chr4 56891203 56891351 -145436996 - AluJo SINE Alu -157 155 1 1154 222 49 49 chr4 56891925 56892290 -145436057 - MLT1A1 LTR MaLR 0 365 1 203 229 29 86 chr4 56892325 56892395 -145435952 - MER91B DNA MER1_type -115 75 10 241 309 0 53 chr4 56892401 56892495 -145435852 - L2 LINE L2 -491 2823 2735 349 318 0 75 chr4 56892513 56892686 -145435661 - L2 LINE L2 -739 2575 2416 1264 140 0 0 chr4 56892796 56892974 -145435373 + AluSg/x SINE Alu 111 288 -24 2320 101 0 0 chr4 56893672 56893968 -145434379 - AluSx SINE Alu -16 296 1 1157 268 135 5 chr4 56895060 56895452 -145432895 + L2 LINE L2 2831 3273 -40 194 339 183 0 chr4 56895717 56895832 -145432515 + L2 LINE L2 3137 3272 0 420 280 70 0 chr4 56895941 56896041 -145432306 - MIR3 SINE MIR -28 180 74 1623 177 4 14 chr4 56896058 56896335 -145432012 + AluJb SINE Alu 1 274 -38 387 0 0 0 chr4 56896343 56896386 -145431961 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 2241 111 3 0 chr4 56896391 56896698 -145431649 + AluSx SINE Alu 1 308 -4 195 129 0 0 chr4 56899271 56899302 -145429045 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1671 186 118 15 chr4 56900042 56900657 -145427690 + L1MB7 LINE L1 5439 6175 -9 2171 110 0 38 chr4 56901838 56902156 -145426191 - AluSg1 SINE Alu -3 306 1 454 180 11 0 chr4 56903038 56903127 -145425220 + AluSp/q SINE Alu 217 306 -7 230 369 123 0 chr4 56904347 56904477 -145423870 - L2 LINE L2 0 3272 3127 2455 89 6 12 chr4 56904541 56904926 -145423421 + MER41B LTR ERV1 1 344 -210 1359 203 42 61 chr4 56905855 56906166 -145422181 - AluJb SINE Alu -7 305 1 2072 147 0 13 chr4 56906621 56906927 -145421420 + AluJo SINE Alu 1 302 -10 1410 208 167 32 chr4 56906949 56907392 -145420955 - MER74A LTR ERVL -55 503 1 395 306 11 68 chr4 56908429 56908614 -145419733 + L1M4 LINE L1 3771 3927 -2219 1969 142 0 0 chr4 56908614 56908929 -145419418 - AluJb SINE Alu 0 315 1 395 306 11 68 chr4 56908929 56909108 -145419239 + L1M4 LINE L1 3927 4115 -2031 2241 223 91 10 chr4 56910163 56910351 -145417996 + L1MC4 LINE L1 6460 6631 -1411 1966 104 54 17 chr4 56910351 56910648 -145417699 + AluY SINE Alu 1 308 -3 2241 223 91 10 chr4 56910648 56910673 -145417674 + L1MC4 LINE L1 6631 6653 -1389 240 86 0 0 chr4 56910673 56910708 -145417639 + (TG)n Simple_repeat Simple_repeat 2 36 0 2241 223 91 10 chr4 56910708 56911072 -145417275 + L1MC4 LINE L1 6653 7106 -936 180 77 0 0 chr4 56911072 56911098 -145417249 + (CATA)n Simple_repeat Simple_repeat 2 27 0 2241 223 91 10 chr4 56911098 56911213 -145417134 + L1MC4 LINE L1 7106 7210 -832 40630 38 21 2 chr4 56911218 56917251 -145411096 + L1PA2 LINE L1 1 6153 -2 298 218 20 7 chr4 56917250 56917396 -145410951 + L1MC4 LINE L1 7213 7430 -612 * 1680 167 4 0 chr4 56917403 56917661 -145410686 + AluSq SINE Alu 1 259 -54 1202 66 0 0 chr4 56917764 56917915 -145410432 + AluY SINE Alu 154 304 -7 1858 149 7 4 chr4 56917922 56918203 -145410144 + AluJb SINE Alu 1 282 -30 2532 175 27 33 chr4 56918214 56918735 -145409612 + MLT1F1 LTR MaLR 16 533 -34 727 283 48 12 chr4 56918735 56919070 -145409277 - L2 LINE L2 -277 3036 2690 497 264 115 5 chr4 56919130 56919299 -145409048 + MIR SINE MIR 37 219 -43 327 104 0 0 chr4 56919427 56919475 -145408872 - MLT2A1 LTR ERVL -2 442 395 770 189 63 0 chr4 56919722 56919865 -145408482 + FRAM SINE Alu 1 40 0 323 143 36 0 chr4 56919959 56920015 -145408332 - L2 LINE L2 0 3313 3256 2207 194 44 29 chr4 56920015 56920608 -145407739 + pTR5 LTR ERV1 743 1344 -1094 4439 86 12 189 chr4 56920624 56921622 -145406725 + LTR12 LTR ERV1 5 825 -1 276 200 17 17 chr4 56921623 56921683 -145406664 - L2 LINE L2 -54 3259 3200 21 57 0 0 chr4 56922711 56922746 -145405601 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 56923115 56923136 -145405211 + AT_rich Low_complexity Low_complexity 1 21 0 562 280 93 51 chr4 56923440 56923637 -145404710 - MIR SINE MIR -11 251 41 2147 135 0 0 chr4 56923637 56923934 -145404413 + AluSx SINE Alu 1 297 -15 562 280 93 51 chr4 56923934 56923972 -145404375 - MIR SINE MIR -221 41 6 339 197 26 0 chr4 56924090 56924166 -145404181 - LTR67 LTR ERVL -22 535 458 300 300 11 0 chr4 56924429 56924519 -145403828 - MLT1K LTR MaLR -494 94 4 790 287 69 20 chr4 56924522 56924769 -145403578 - MIR SINE MIR 0 262 4 354 113 32 0 chr4 56925005 56925067 -145403280 + MLT1L LTR MaLR 150 213 -402 300 198 25 12 chr4 56925290 56925371 -145402976 + MLT1L LTR MaLR 516 597 -18 213 265 29 29 chr4 56925386 56925454 -145402893 + MIR3 SINE MIR 111 178 -30 2118 115 0 21 chr4 56925643 56925930 -145402417 + AluSx SINE Alu 17 297 -15 820 254 174 51 chr4 56926805 56927317 -145401030 + L2 LINE L2 2740 3308 -5 264 323 62 0 chr4 56927925 56927990 -145400357 + L2 LINE L2 3117 3185 -87 2339 108 3 0 chr4 56928074 56928380 -145399967 + AluSq SINE Alu 1 307 -6 21 57 0 0 chr4 56928504 56928539 -145399808 + AT_rich Low_complexity Low_complexity 1 35 0 38419 73 5 1 chr4 56928540 56934658 -145393689 - L1PA6 LINE L1 -5 6149 11 589 206 51 62 chr4 56934658 56934861 -145393486 - L1MDa LINE L1 -3942 2598 2397 2163 114 3 3 chr4 56934861 56935160 -145393187 - AluSx SINE Alu -13 299 1 589 206 51 62 chr4 56935160 56935213 -145393134 - L1MDa LINE L1 -4143 2397 2345 2259 114 0 3 chr4 56935613 56935921 -145392426 + AluSx SINE Alu 1 307 -5 219 245 0 0 chr4 56936022 56936071 -145392276 + (ATG)n Simple_repeat Simple_repeat 1 49 0 2177 136 0 0 chr4 56936361 56936663 -145391684 + AluSx SINE Alu 1 302 -10 183 296 0 19 chr4 56937782 56937836 -145390511 + L2 LINE L2 3219 3271 -1 229 262 35 28 chr4 56937886 56938027 -145390320 - L1MC4 LINE L1 -1 8041 7900 1433 84 0 30 chr4 56939018 56939220 -145389127 - MER107 DNA MER1_type 0 197 2 638 239 8 0 chr4 56939417 56939547 -145388800 + FLAM_A SINE Alu 1 131 -2 293 316 34 26 chr4 56940088 56940205 -145388142 + L2 LINE L2 3192 3309 -4 2131 73 24 7 chr4 56940579 56940868 -145387479 - AluY SINE Alu -17 294 1 431 266 46 12 chr4 56941231 56941404 -145386943 - L1ME3 LINE L1 -51 6111 5933 823 152 0 16 chr4 56941769 56941894 -145386453 + FLAM_C SINE Alu 1 123 -20 1703 198 0 3 chr4 56942175 56942473 -145385874 - AluSx SINE Alu -15 297 1 22 35 0 0 chr4 56942941 56942970 -145385377 + AT_rich Low_complexity Low_complexity 1 29 0 180 97 0 0 chr4 56945991 56946022 -145382325 + (C)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr4 56946228 56946249 -145382098 + GC_rich Low_complexity Low_complexity 1 21 0 828 239 136 62 chr4 56946373 56947000 -145381347 - HAL1 LINE L1 -1235 1272 600 458 256 45 0 chr4 56946992 56947148 -145381199 - HAL1 LINE L1 -2205 302 140 * 31 0 0 0 chr4 56947252 56947283 -145381064 + AT_rich Low_complexity Low_complexity 1 31 0 282 311 40 0 chr4 56948109 56948183 -145380164 - L2 LINE L2 -3 3310 3234 219 69 0 0 chr4 56948195 56948224 -145380123 + (TG)n Simple_repeat Simple_repeat 2 30 0 2194 127 0 0 chr4 56948380 56948679 -145379668 - AluSq SINE Alu -14 299 1 2214 95 0 14 chr4 56948868 56949164 -145379183 - AluSg SINE Alu -18 292 1 472 242 135 17 chr4 56950255 56950433 -145377914 - L2 LINE L2 -865 2449 2251 1865 135 4 7 chr4 56951330 56951604 -145376743 + AluSx SINE Alu 1 273 -39 188 269 39 77 chr4 56951604 56951698 -145376649 - L2 LINE L2 -839 2475 2384 844 243 44 8 chr4 56953413 56953664 -145374683 + MIR SINE MIR 2 261 -1 4588 243 53 54 chr4 56953743 56954880 -145373467 - L2 LINE L2 -494 2820 1684 1868 164 0 0 chr4 56954880 56955167 -145373180 + AluSx SINE Alu 1 287 -25 4588 243 53 54 chr4 56955167 56955598 -145372749 - L2 LINE L2 -1630 1684 1254 460 191 78 0 chr4 56955598 56955713 -145372634 - L2 LINE L2 -1577 1737 1614 377 197 265 0 chr4 56955720 56955837 -145372510 + MER44D DNA MER2_type 1 418 -191 4429 101 9 0 chr4 56955838 56956475 -145371872 - HSMAR1 DNA Mariner 0 1287 645 41380 40 6 2 chr4 56956475 56962598 -145365749 - L1PA3 LINE L1 -1 6154 7 4172 98 41 12 chr4 56962603 56963243 -145365104 - HSMAR1 DNA Mariner -629 658 1 797 156 88 0 chr4 56963243 56963400 -145364947 + MER44D DNA MER2_type 423 593 -16 410 317 83 26 chr4 56963462 56963727 -145364620 - L2 LINE L2 -2073 1241 962 22 0 0 0 chr4 56964265 56964287 -145364060 + AT_rich Low_complexity Low_complexity 1 22 0 430 271 58 13 chr4 56964322 56964477 -145363870 - L1ME3A LINE L1 -3 6167 6006 3595 228 68 57 chr4 56964506 56966446 -145361901 - L1MC4 LINE L1 -1 8041 5948 185 62 0 31 chr4 56967978 56968010 -145360337 + (TTTTTG)n Simple_repeat Simple_repeat 5 35 0 23 33 0 0 chr4 56968064 56968094 -145360253 + AT_rich Low_complexity Low_complexity 1 30 0 395 375 12 0 chr4 56968804 56968964 -145359383 + MIR3 SINE MIR 46 207 -1 260 257 44 80 chr4 56968973 56969086 -145359261 - MIR SINE MIR -68 140 32 1917 136 7 0 chr4 56969143 56969437 -145358910 + AluSx SINE Alu 1 296 -16 2376 73 0 9 chr4 56969819 56970135 -145358212 + AluSp SINE Alu 1 313 0 234 0 0 0 chr4 56970199 56970225 -145358122 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 513 0 0 0 chr4 56970224 56970281 -145358066 + (TC)n Simple_repeat Simple_repeat 1 57 0 319 329 46 13 chr4 56970743 56970895 -145357452 - L1ME3A LINE L1 -227 5894 5738 315 305 35 58 chr4 56971426 56971600 -145356747 + MIR3 SINE MIR 30 199 -9 281 198 0 37 chr4 56972374 56972455 -145355892 + CT-rich Low_complexity Low_complexity 3 80 0 203 239 0 0 chr4 56972793 56972839 -145355508 - MIR SINE MIR -108 154 109 198 156 0 0 chr4 56972846 56972878 -145355469 + L2 LINE L2 3272 3303 -10 194 294 120 43 chr4 56972884 56972976 -145355371 - MIR3 SINE MIR -97 111 13 209 186 0 23 chr4 56972978 56973021 -145355326 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 223 274 16 16 chr4 56973199 56973261 -145355086 + MIR SINE MIR 200 261 -1 373 296 275 35 chr4 56973466 56974266 -145354081 - L2 LINE L2 -231 3041 2035 1490 63 9 10 chr4 56974420 56974627 -145353720 - L1PA4 LINE L1 -82 6073 5874 967 117 132 143 chr4 56974636 56974902 -145353445 - AluJb SINE Alu -45 267 5 952 178 17 11 chr4 56974903 56975083 -145353264 - MLT1B LTR MaLR -209 181 1 2238 73 3 0 chr4 56975159 56975447 -145352900 - AluSp SINE Alu -24 289 1 1114 257 80 15 chr4 56975543 56975882 -145352465 + MLT1G LTR MaLR 10 370 -220 588 232 78 7 chr4 56976690 56976832 -145351515 + MIR SINE MIR 1 152 -110 24 53 0 0 chr4 56976854 56976892 -145351455 + AT_rich Low_complexity Low_complexity 1 38 0 188 235 59 59 chr4 56976892 56976960 -145351387 + MIR SINE MIR 175 242 -20 212 261 67 25 chr4 56977217 56977336 -145351011 - L2 LINE L2 -1139 2175 2052 207 208 19 0 chr4 56977436 56977489 -145350858 + (TG)n Simple_repeat Simple_repeat 2 55 0 37 26 0 0 chr4 56979032 56979071 -145349276 + AT_rich Low_complexity Low_complexity 1 39 0 390 125 16 16 chr4 56979079 56979143 -145349204 - AluJ/FRAM SINE Alu -16 286 223 495 278 73 49 chr4 56979265 56979470 -145348877 + L3 LINE CR1 1262 1471 -106 491 329 57 8 chr4 56980466 56980712 -145347635 + MIR SINE MIR 2 259 -3 1221 80 0 0 chr4 56980881 56981032 -145347315 + THE1A LTR MaLR 205 355 0 10083 97 11 5 chr4 56981032 56982410 -145345937 + THE1A-int LTR MaLR 1 1386 -194 738 226 32 0 chr4 56982517 56982672 -145345675 + MIR SINE MIR 27 186 -76 554 245 35 31 chr4 56982861 56983122 -145345225 - L1M4 LINE L1 -1588 4558 4297 180 281 16 16 chr4 56983409 56983473 -145344874 - L2 LINE L2 -81 3232 3169 660 232 28 0 chr4 56983491 56983633 -145344714 - MER58A DNA MER1_type 0 224 79 2848 90 0 3 chr4 56984185 56984550 -145343797 - THE1B LTR MaLR 0 364 1 810 154 88 0 chr4 56985013 56985149 -145343198 + FRAM SINE Alu 1 146 -30 564 136 0 68 chr4 56985520 56985623 -145342724 - MER67A LTR ERV1 -447 96 1 337 332 63 39 chr4 56985903 56986316 -145342031 + L2 LINE L2 2256 2678 -636 239 267 193 24 chr4 56986331 56986585 -145341762 + L2 LINE L2 2779 3076 -237 1237 101 5 0 chr4 56986778 56986967 -145341380 + AluY SINE Alu 120 309 -2 213 132 26 0 chr4 56988118 56988156 -145340191 + G-rich Low_complexity Low_complexity 1 39 0 1750 170 0 0 chr4 56988884 56989201 -145339146 + AluJb SINE Alu 1 317 0 385 331 103 17 chr4 56989521 56989696 -145338651 - MIR SINE MIR -2 260 71 2068 132 3 0 chr4 56989707 56990002 -145338345 + AluSx SINE Alu 1 296 -16 325 277 87 41 chr4 56990118 56990360 -145337987 + L1ME LINE L1 5543 5795 -326 4147 147 55 11 chr4 56990779 56991475 -145336872 + MER44D DNA MER2_type 1 598 -7 225 216 14 68 chr4 56991518 56991592 -145336755 + L2 LINE L2 3234 3303 -10 593 209 124 13 chr4 56991991 56992144 -145336203 - MER5B DNA MER1_type -8 170 1 244 259 65 9 chr4 56992608 56992716 -145335631 - L2 LINE L2 -213 3059 2946 459 248 19 76 chr4 56992731 56992888 -145335459 + MIR3 SINE MIR 54 201 -7 303 185 32 6 chr4 56993567 56993724 -145334623 + (TG)n Simple_repeat Simple_repeat 2 162 0 227 233 17 35 chr4 56993750 56993866 -145334481 + (TG)n Simple_repeat Simple_repeat 2 115 0 781 188 8 0 chr4 56994009 56994142 -145334205 - AluJo SINE Alu -92 220 87 532 313 18 18 chr4 56994210 56994373 -145333974 - MIR3 SINE MIR -10 198 36 573 283 127 19 chr4 56994436 56994648 -145333699 - MIR SINE MIR -25 237 3 421 238 150 69 chr4 56995592 56995780 -145332567 + MIR SINE MIR 28 224 -38 1739 116 17 20 chr4 56995848 56996140 -145332207 + AluSx SINE Alu 1 291 -21 363 292 116 25 chr4 56996159 56996362 -145331985 - MIR SINE MIR -4 258 37 254 258 0 16 chr4 56996931 56996993 -145331354 + CT-rich Low_complexity Low_complexity 2 62 0 754 281 0 0 chr4 56997091 56997262 -145331085 - MIR SINE MIR -90 172 2 190 308 209 33 chr4 56997302 56997393 -145330954 - L3b LINE CR1 -34 1549 1443 191 36 36 0 chr4 56998262 56998290 -145330057 + (TTG)n Simple_repeat Simple_repeat 2 30 0 634 136 56 8 chr4 56998517 56998642 -145329705 - AluSq/x SINE Alu -168 145 15 207 368 109 53 chr4 56999328 56999443 -145328904 + L2 LINE L2 988 1095 -2219 2253 61 3 7 chr4 56999443 56999740 -145328607 - AluSg SINE Alu -14 296 1 207 368 109 53 chr4 56999740 57000037 -145328310 + L2 LINE L2 1095 1423 -1891 1159 80 105 0 chr4 57000328 57000490 -145327857 - AluSp SINE Alu -134 179 1 1681 182 0 13 chr4 57000568 57000875 -145327472 + AluJb SINE Alu 1 303 -9 545 201 114 55 chr4 57001074 57001293 -145327054 - L1MC4 LINE L1 0 8042 7811 26 30 0 0 chr4 57001303 57001336 -145327011 + AT_rich Low_complexity Low_complexity 1 33 0 440 180 172 0 chr4 57001510 57001639 -145326708 - L1ME2 LINE L1 0 6166 6015 260 227 0 0 chr4 57001642 57001686 -145326661 - U6 snRNA snRNA -1 106 63 426 231 112 30 chr4 57001832 57001966 -145326381 + MER58A DNA MER1_type 1 145 0 356 253 168 23 chr4 57002360 57002664 -145325683 + L1ME4a LINE L1 5709 6056 -65 198 143 0 0 chr4 57002698 57002733 -145325614 + (TG)n Simple_repeat Simple_repeat 2 36 0 1992 115 4 0 chr4 57002733 57003012 -145325335 - AluSx SINE Alu -32 280 1 384 203 246 8 chr4 57003326 57003444 -145324903 + MER5A DNA MER1_type 9 154 -35 3492 131 34 20 chr4 57003798 57004395 -145323952 - MER6A DNA MER2_type 0 605 1 198 0 0 0 chr4 57004494 57004516 -145323831 + (T)n Simple_repeat Simple_repeat 1 22 0 1526 153 35 0 chr4 57004637 57004808 -145323539 - AluJo SINE Alu -13 299 115 207 0 0 0 chr4 57004808 57004831 -145323516 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1526 153 35 0 chr4 57004831 57004913 -145323434 - AluJo SINE Alu -197 115 37 459 282 74 25 chr4 57005219 57005382 -145322965 + L2 LINE L2 2560 2730 -584 316 243 236 28 chr4 57005451 57005595 -145322752 + MLT1H LTR MaLR 1 174 -375 610 304 135 22 chr4 57006087 57006531 -145321816 - L2 LINE L2 0 3313 2820 255 272 99 12 chr4 57007584 57007665 -145320682 - MIR SINE MIR -13 249 162 2264 166 43 86 chr4 57008009 57008568 -145319779 + MER44D DNA MER2_type 1 590 -15 531 238 19 0 chr4 57008575 57008680 -145319667 + MIR SINE MIR 154 260 -2 407 303 88 66 chr4 57010472 57010789 -145317558 - L3 LINE CR1 -3 1574 1251 1709 193 98 28 chr4 57011018 57011257 -145317090 - MLT1C LTR MaLR 0 467 246 2419 118 25 6 chr4 57011257 57011613 -145316734 + THE1B LTR MaLR 1 363 -1 1709 193 98 28 chr4 57011613 57011803 -145316544 - MLT1C LTR MaLR -221 246 8 223 279 23 35 chr4 57011817 57011903 -145316444 + CT-rich Low_complexity Low_complexity 4 88 0 284 302 101 19 chr4 57013288 57013447 -145314900 + MIR3 SINE MIR 30 201 -7 242 333 116 0 chr4 57013598 57013727 -145314620 - MIR SINE MIR -10 252 109 398 322 129 0 chr4 57013790 57013961 -145314386 - MIR SINE MIR 0 262 70 1521 138 40 40 chr4 57014139 57014415 -145313932 + AluJo SINE Alu 1 276 -36 336 64 0 0 chr4 57014423 57014470 -145313877 + (CAAAC)n Simple_repeat Simple_repeat 2 48 0 295 261 120 49 chr4 57014647 57014789 -145313558 + MIR3 SINE MIR 11 162 -46 557 298 21 0 chr4 57014839 57014980 -145313367 - MIR SINE MIR -90 172 29 32 0 0 0 chr4 57015601 57015633 -145312714 + AT_rich Low_complexity Low_complexity 1 32 0 1040 166 77 75 chr4 57016923 57017196 -145311151 + MER63B DNA MER1_type 12 288 -774 1547 156 42 3 chr4 57017196 57017479 -145310868 - AluJo SINE Alu -18 294 1 1040 166 77 75 chr4 57017479 57017567 -145310780 + MER63B DNA MER1_type 288 374 -62 389 222 0 77 chr4 57017768 57017885 -145310462 + MER58 DNA MER1_type 1 108 -233 993 140 0 83 chr4 57018027 57018256 -145310091 + L1MB8 LINE L1 5759 5967 -207 557 290 7 0 chr4 57018874 57019029 -145309318 - LTR33 LTR ERVL -53 468 313 523 259 113 16 chr4 57019094 57019279 -145309068 - LTR33 LTR ERVL -305 216 14 197 238 32 0 chr4 57019563 57019626 -145308721 - L2 LINE L2 -1080 2234 2170 324 0 0 0 chr4 57020095 57020131 -145308216 + (TG)n Simple_repeat Simple_repeat 2 37 0 232 136 77 13 chr4 57020131 57020286 -145308061 + (TA)n Simple_repeat Simple_repeat 1 165 0 1603 174 0 11 chr4 57020292 57020573 -145307774 - AluJo SINE Alu -30 282 5 421 261 8 8 chr4 57020690 57020809 -145307538 - MER113 DNA MER1_type? -6 515 397 367 197 118 40 chr4 57020836 57020988 -145307359 - MER113 DNA MER1_type? -190 331 168 464 250 48 0 chr4 57021234 57021338 -145307009 + MER81 DNA DNA 1 109 -5 1746 107 0 0 chr4 57021579 57021812 -145306535 - AluSc SINE Alu -76 233 1 388 284 9 33 chr4 57021825 57021967 -145306380 - MIR SINE MIR -62 146 16 283 301 37 31 chr4 57022130 57022293 -145306054 + MIR3 SINE MIR 11 174 -34 352 187 19 28 chr4 57022381 57022488 -145305859 + MER113 DNA MER1_type? 8 113 -408 480 283 59 11 chr4 57022551 57022738 -145305609 - L2 LINE L2 0 3313 3118 225 140 0 0 chr4 57022845 57022895 -145305452 + Alu SINE Alu 254 303 0 285 284 101 34 chr4 57023165 57023313 -145305034 + MLT1-int LTR MaLR 692 849 -522 373 287 123 49 chr4 57023554 57023878 -145304469 + MLT1-int LTR MaLR 1023 1370 -1 203 202 5 96 chr4 57023957 57024155 -145304192 + (TAG)n Simple_repeat Simple_repeat 1 180 0 561 254 21 7 chr4 57024219 57024361 -145303986 + MIR SINE MIR 7 150 -112 427 279 22 50 chr4 57024949 57025128 -145303219 + MER5B DNA MER1_type 4 177 -1 1948 146 3 10 chr4 57025747 57026048 -145302299 - AluSx SINE Alu -13 299 1 816 165 274 0 chr4 57026069 57026396 -145301951 + Charlie1b DNA MER1_type 37 455 -68 30 59 0 0 chr4 57027281 57027332 -145301015 + AT_rich Low_complexity Low_complexity 1 51 0 695 176 141 18 chr4 57027586 57027756 -145300591 + AluSg/x SINE Alu 119 309 -1 1253 157 27 0 chr4 57028064 57028287 -145300060 - L1MC1 LINE L1 0 6333 6105 1783 177 0 19 chr4 57028297 57028613 -145299734 + AluJb SINE Alu 1 310 -2 1420 147 188 0 chr4 57028614 57028923 -145299424 - MSTB1 LTR MaLR -99 333 1 4256 130 43 6 chr4 57028923 57029640 -145298707 - L1MC1 LINE L1 -265 6068 5325 2558 49 7 0 chr4 57029807 57030111 -145298236 - AluY SINE Alu -5 306 1 46 45 0 0 chr4 57030485 57030552 -145297795 + AT_rich Low_complexity Low_complexity 1 67 0 534 120 0 0 chr4 57030651 57030726 -145297621 + AluJ/FLAM SINE Alu 3 77 -235 270 274 14 0 chr4 57031265 57031338 -145297009 + MIR SINE MIR 100 173 -89 387 237 118 120 chr4 57031414 57031907 -145296440 + LTR33 LTR ERVL 19 510 -11 197 261 46 31 chr4 57031908 57031973 -145296374 + MIR SINE MIR 195 260 -2 915 207 17 68 chr4 57032134 57032486 -145295861 + Charlie1a DNA MER1_type 59 447 -1008 899 164 85 0 chr4 57032514 57032703 -145295644 + Charlie1a DNA MER1_type 537 741 -714 242 304 160 53 chr4 57034293 57034556 -145293791 - L2 LINE L2 -12 3260 2970 6416 135 21 5 chr4 57034890 57035911 -145292436 - L1PA12 LINE L1 -5300 2281 1245 4375 188 30 32 chr4 57036014 57037019 -145291328 + L1MA10 LINE L1 5329 6331 -3 389 254 12 0 chr4 57037017 57037186 -145291161 + L1M4 LINE L1 3073 3243 -2903 * 2011 130 34 0 chr4 57037413 57037706 -145290641 - AluSx SINE Alu -9 303 1 28 29 0 0 chr4 57037790 57037825 -145290522 + AT_rich Low_complexity Low_complexity 1 35 0 334 275 75 51 chr4 57037908 57038279 -145290068 + L1MEc LINE L1 1375 1754 -4642 244 271 0 0 chr4 57038292 57038351 -145289996 + (CA)n Simple_repeat Simple_repeat 2 60 0 7667 173 47 2 chr4 57038594 57040200 -145288147 - L1P LINE L1 -1357 4789 3111 21722 75 7 1 chr4 57040300 57043360 -145284987 - L1P LINE L1 -2513 3633 557 963 98 33 0 chr4 57043460 57043613 -145284734 - MER4B LTR ERV1 -452 158 1 734 173 14 132 chr4 57043613 57043832 -145284515 + MLT1C LTR MaLR 198 467 0 263 301 18 35 chr4 57043836 57043949 -145284398 - MLT1I LTR MaLR -185 224 114 36 0 0 0 chr4 57044064 57044100 -145284247 + AT_rich Low_complexity Low_complexity 1 36 0 246 269 128 0 chr4 57044215 57044293 -145284054 + MIR3 SINE MIR 111 198 -10 23 68 0 0 chr4 57044563 57044607 -145283740 + AT_rich Low_complexity Low_complexity 1 44 0 261 283 20 30 chr4 57046365 57046464 -145281883 - MIR SINE MIR -75 187 90 441 364 63 22 chr4 57046763 57047032 -145281315 - HAL1 LINE L1 -1593 914 635 824 281 115 16 chr4 57047601 57047967 -145280380 - LTR33 LTR ERVL -20 501 100 2015 275 93 20 chr4 57049640 57050827 -145277520 - L1M4 LINE L1 -1131 5015 3743 360 229 64 18 chr4 57051706 57051815 -145276532 - L1ME4a LINE L1 -49 6072 5959 314 257 29 0 chr4 57052104 57052174 -145276173 + L2 LINE L2 3201 3272 0 972 178 0 61 chr4 57052182 57052396 -145275951 + MLT1B LTR MaLR 2 202 -188 709 193 28 7 chr4 57052390 57052535 -145275812 + MLT2D LTR ERVL 219 366 -48 * 29 0 0 0 chr4 57052849 57052878 -145275469 + AT_rich Low_complexity Low_complexity 1 29 0 437 354 122 23 chr4 57052987 57053510 -145274837 + L2 LINE L2 1841 2415 -899 3390 179 61 18 chr4 57053547 57054318 -145274029 + L1MB7 LINE L1 5379 6182 -2 698 351 24 26 chr4 57057043 57057501 -145270846 + L1PA13 LINE L1 788 1244 -6330 393 276 0 0 chr4 57057764 57057862 -145270485 + L1PA13 LINE L1 2085 2182 -5399 2285 183 54 32 chr4 57058354 57058822 -145269525 + MLT2B1 LTR ERVL 1 482 -38 186 71 0 0 chr4 57058822 57058850 -145269497 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 2285 183 54 32 chr4 57058850 57058885 -145269462 + MLT2B1 LTR ERVL 482 515 -5 2408 234 22 8 chr4 57058885 57059561 -145268786 + ERVL LTR ERVL 1 706 -4966 12367 48 59 1 chr4 57059668 57061364 -145266983 - L1P LINE L1 -3573 2573 779 1368 39 6 0 chr4 57061464 57061642 -145266705 + THE1B-int LTR MaLR 1396 1574 -6 2221 123 73 15 chr4 57061647 57061989 -145266358 + THE1B LTR MaLR 1 362 -2 251 254 79 18 chr4 57062531 57062645 -145265702 - L1ME4a LINE L1 -12 6109 5989 1754 191 28 18 chr4 57062651 57063038 -145265309 + L1M1 LINE L1 14 404 -7161 566 294 86 56 chr4 57063155 57063569 -145264778 - L1ME4a LINE L1 -216 5946 5513 2129 109 34 0 chr4 57063569 57063862 -145264485 - AluSx SINE Alu -9 303 1 566 294 86 56 chr4 57063862 57063950 -145264397 - L1ME4a LINE L1 -649 5513 5429 227 309 61 35 chr4 57064121 57064351 -145263996 - L1ME4a LINE L1 -866 5280 5045 361 243 100 29 chr4 57064384 57064594 -145263753 - L1ME4a LINE L1 -1163 4983 4759 329 250 154 0 chr4 57064641 57064797 -145263550 - L1ME4a LINE L1 -1698 4448 4269 376 229 64 8 chr4 57064803 57064973 -145263374 - L1M LINE L1 -743 5403 5228 2190 112 0 3 chr4 57065553 57065856 -145262491 + AluSc SINE Alu 1 302 -7 1159 96 0 0 chr4 57066935 57067092 -145261255 - AluY SINE Alu 0 311 155 5422 258 14 29 chr4 57067678 57069487 -145258860 + L1PA12 LINE L1 2803 4602 -2982 781 191 0 0 chr4 57069487 57069618 -145258729 + FLAM_C SINE Alu 1 131 -2 5422 258 14 29 chr4 57069618 57069874 -145258473 + L1PA12 LINE L1 4602 4860 -2724 4263 206 12 19 chr4 57069977 57070799 -145257548 - L1 LINE L1 -2870 3480 2654 252 0 0 0 chr4 57070799 57070827 -145257520 + (TA)n Simple_repeat Simple_repeat 2 29 0 1595 149 78 18 chr4 57070827 57071108 -145257239 - AluSx SINE Alu -14 298 1 4263 206 12 19 chr4 57071108 57071393 -145256954 - L1 LINE L1 -3694 2656 2380 386 272 246 5 chr4 57072166 57072361 -145255986 - MIR SINE MIR -3 259 18 4914 266 50 45 chr4 57072598 57075318 -145253029 - L1 LINE L1 -3957 2393 2 1468 239 41 39 chr4 57075365 57075900 -145252447 + MER20B DNA MER1_type 182 717 -66 2474 216 16 59 chr4 57075939 57076688 -145251659 + L1ME1 LINE L1 5446 6162 -4 731 283 52 25 chr4 57076805 57077130 -145251217 + MLT1L LTR MaLR 133 466 -149 1743 158 10 14 chr4 57077151 57077443 -145250904 + MER1B DNA MER1_type 49 339 0 322 294 68 7 chr4 57077443 57077589 -145250758 + MLT1L LTR MaLR 461 615 0 420 285 50 103 chr4 57077600 57077881 -145250466 + L2 LINE L2 3007 3272 0 648 318 41 8 chr4 57078703 57078945 -145249402 + MIR SINE MIR 12 261 -1 462 234 78 26 chr4 57079092 57079246 -145249101 - MIR SINE MIR -15 247 86 967 194 5 41 chr4 57079272 57079468 -145248879 - MER5A DNA MER1_type 0 189 1 2045 133 24 0 chr4 57079470 57079763 -145248584 - AluSx SINE Alu -12 300 1 551 190 22 92 chr4 57080325 57080509 -145247838 + LTR41 LTR ERVL 1 171 -602 355 176 152 44 chr4 57080983 57081140 -145247207 + LTR41 LTR ERVL 604 794 -1 355 370 26 13 chr4 57081402 57081632 -145246715 + ERVL LTR ERVL 380 612 -5152 390 319 41 76 chr4 57082095 57082530 -145245817 + L1ME4a LINE L1 4737 5156 -990 2110 123 84 56 chr4 57082636 57083205 -145245142 + MER4A LTR ERV1 1 444 -21 429 281 131 31 chr4 57083431 57083908 -145244439 + L1ME4a LINE L1 5494 6026 -95 21 0 0 0 chr4 57083996 57084017 -145244330 + AT_rich Low_complexity Low_complexity 1 21 0 356 283 36 48 chr4 57084153 57084319 -145244028 + MIR3 SINE MIR 20 183 -25 213 159 0 0 chr4 57084770 57084814 -145243533 + (TG)n Simple_repeat Simple_repeat 1 44 0 559 265 36 6 chr4 57084819 57084985 -145243362 - MIR SINE MIR -7 255 85 1788 156 11 47 chr4 57086148 57086513 -145241834 + MLT1A1 LTR MaLR 14 365 0 453 238 9 9 chr4 57086513 57086618 -145241729 + L2 LINE L2 3209 3313 0 860 310 85 26 chr4 57086626 57087119 -145241228 + MLT1K LTR MaLR 2 523 -65 23 0 0 0 chr4 57087149 57087172 -145241175 + AT_rich Low_complexity Low_complexity 1 23 0 553 264 146 9 chr4 57087282 57087502 -145240845 - MLT1J LTR MaLR -35 476 227 470 299 0 8 chr4 57087602 57087719 -145240628 - L2 LINE L2 -5 3308 3193 2017 138 39 36 chr4 57087726 57088089 -145240258 - THE1B LTR MaLR 0 364 1 1147 180 111 69 chr4 57088304 57088423 -145239924 + MER7A DNA MER2_type 1 114 -2924 23956 29 1 0 chr4 57088423 57092070 -145236277 - L1PA3 LINE L1 -5 6150 2503 1147 180 111 69 chr4 57092070 57092283 -145236064 + MER7A DNA MER2_type 114 345 -1 315 292 10 0 chr4 57092393 57092489 -145235858 + MIR SINE MIR 124 220 -42 297 278 91 34 chr4 57092966 57093142 -145235205 - MLT1L LTR MaLR -233 382 197 2043 132 68 14 chr4 57093357 57093712 -145234635 - THE1C LTR MaLR -1 374 1 2334 259 42 28 chr4 57093724 57094735 -145233612 - HAL1b LINE L1 -157 1191 167 1593 66 5 5 chr4 57094908 57095120 -145233227 + L1PA6 LINE L1 5940 6151 -3 368 293 112 60 chr4 57095724 57095973 -145232374 - L3 LINE CR1 -2 1575 1314 264 100 0 0 chr4 57096991 57097031 -145231316 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 1671 183 11 0 chr4 57097031 57097347 -145231000 - AluJb SINE Alu 0 312 1 628 338 45 0 chr4 57097591 57097792 -145230555 - MIR SINE MIR -52 210 1 744 275 34 4 chr4 57098034 57098303 -145230044 + L1MEd LINE L1 2 278 -5841 455 276 167 45 chr4 57098332 57098912 -145229435 + L1MEd LINE L1 356 1006 -5113 585 268 71 10 chr4 57099075 57099273 -145229074 - MER58C DNA MER1_type -5 210 1 562 267 35 30 chr4 57099283 57099485 -145228862 + MLT1K LTR MaLR 325 527 -61 482 31 0 15 chr4 57099486 57099551 -145228796 + (TTTTA)n Simple_repeat Simple_repeat 1 64 0 28642 32 10 0 chr4 57099551 57103936 -145224411 - L1PA3 LINE L1 -24 6131 1719 336 319 78 14 chr4 57104194 57104335 -145224012 - MIR SINE MIR -30 232 83 465 202 0 0 chr4 57104337 57104426 -145223921 + MER58B DNA MER1_type 250 338 -3 526 344 55 28 chr4 57105153 57105516 -145222831 - L2 LINE L2 -69 3203 2831 493 254 127 41 chr4 57105815 57105914 -145222433 + MIR SINE MIR 43 132 -130 2050 164 0 0 chr4 57105914 57106219 -145222128 + AluJb SINE Alu 1 305 -7 493 254 127 41 chr4 57106219 57106316 -145222031 + MIR SINE MIR 132 256 -6 1553 166 9 18 chr4 57106377 57106703 -145221644 + MER33 DNA MER1_type 2 324 0 192 77 0 0 chr4 57107241 57107267 -145221080 + (CA)n Simple_repeat Simple_repeat 1 26 0 193 315 63 35 chr4 57107541 57107684 -145220663 + L2 LINE L2 1800 1946 -1368 1161 300 92 54 chr4 57107763 57107963 -145220384 + L2 LINE L2 1814 2005 -1309 1902 143 101 18 chr4 57107963 57108299 -145220048 + THE1B LTR MaLR 1 364 0 1161 300 92 54 chr4 57108299 57108947 -145219400 + L2 LINE L2 2005 2694 -620 269 177 13 24 chr4 57109196 57109435 -145218912 + AluJo SINE Alu 1 282 -20 189 0 0 0 chr4 57109438 57109459 -145218888 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 372 336 52 0 chr4 57109533 57109649 -145218698 - L2 LINE L2 -4 3268 3147 184 348 0 0 chr4 57109666 57109735 -145218612 - L2 LINE L2 -395 2877 2809 362 247 12 121 chr4 57109797 57109963 -145218384 - Charlie8 DNA MER1_type -1017 1400 166 1901 182 25 6 chr4 57110168 57110526 -145217821 - MLT1A1 LTR MaLR 0 365 1 2126 125 13 13 chr4 57110685 57110996 -145217351 - AluSx SINE Alu -1 311 1 696 285 91 55 chr4 57110996 57111449 -145216898 + MLT1J LTR MaLR 39 507 -4 903 281 25 0 chr4 57111579 57111821 -145216526 - MIR SINE MIR -13 249 2 601 274 81 5 chr4 57111837 57112060 -145216287 + L2 LINE L2 2816 3055 -258 922 317 85 7 chr4 57112390 57112850 -145215497 + MLT1J LTR MaLR 6 501 -10 355 327 97 65 chr4 57112856 57113321 -145215026 - L2 LINE L2 -458 2856 2377 378 267 167 41 chr4 57113437 57113658 -145214689 + MIR SINE MIR 14 262 0 294 95 0 0 chr4 57114484 57114526 -145213821 + (CA)n Simple_repeat Simple_repeat 2 43 0 1669 161 18 12 chr4 57114980 57115309 -145213038 - L1MB7 LINE L1 0 6184 5854 733 268 24 14 chr4 57115393 57115602 -145212745 - MIR SINE MIR -50 212 2 26 30 0 0 chr4 57115955 57115988 -145212359 + AT_rich Low_complexity Low_complexity 1 33 0 468 239 106 21 chr4 57116683 57116871 -145211476 + MIR SINE MIR 3 206 -56 252 276 17 0 chr4 57116961 57117019 -145211328 + MIR SINE MIR 204 262 0 429 331 65 0 chr4 57117416 57117600 -145210747 - MER91A DNA MER1_type 0 196 1 382 274 52 6 chr4 57117760 57117919 -145210428 - LTR16A LTR ERVL -7 443 226 392 319 42 0 chr4 57117984 57118128 -145210219 - LTR16A LTR ERVL -292 158 9 2826 231 12 9 chr4 57118164 57118808 -145209539 + MER82 DNA MER2_type 8 653 0 2103 125 14 3 chr4 57118816 57119112 -145209235 - AluSx SINE Alu -9 303 5 518 308 138 30 chr4 57120917 57121316 -145207031 + MLT1J1 LTR MaLR 5 446 0 1859 152 48 63 chr4 57121343 57121739 -145206608 + MLT1B LTR MaLR 1 390 0 213 39 0 0 chr4 57121945 57121971 -145206376 + (CA)n Simple_repeat Simple_repeat 1 26 0 339 295 43 72 chr4 57123944 57124083 -145204264 + L2 LINE L2 3137 3271 -1 3142 138 48 33 chr4 57124464 57125009 -145203338 + L1PA16 LINE L1 5614 6166 0 483 300 146 9 chr4 57125357 57125577 -145202770 + MIR SINE MIR 13 262 0 231 88 0 0 chr4 57125907 57125941 -145202406 + (GA)n Simple_repeat Simple_repeat 1 34 0 589 261 6 45 chr4 57126969 57127145 -145201202 - L1ME3 LINE L1 0 6162 5994 1351 231 43 48 chr4 57127163 57127535 -145200812 - MLT1A2 LTR MaLR -4 370 1 3037 68 0 0 chr4 57127560 57127915 -145200432 + THE1A LTR MaLR 1 355 0 12488 97 3 0 chr4 57127915 57129490 -145198857 + THE1A-int LTR MaLR 1 1580 0 2933 85 0 0 chr4 57129490 57129842 -145198505 + THE1A LTR MaLR 1 352 -3 416 242 16 62 chr4 57129883 57130000 -145198347 + L1ME3A LINE L1 5707 5816 -354 2285 118 0 6 chr4 57130000 57130313 -145198034 + AluSx SINE Alu 1 311 -1 23 0 0 0 chr4 57131154 57131177 -145197170 + AT_rich Low_complexity Low_complexity 1 23 0 319 242 82 28 chr4 57131251 57131370 -145196977 + MIR SINE MIR 40 165 -63 475 245 104 0 chr4 57131423 57131529 -145196818 - L2 LINE L2 -2 3270 3154 4614 130 26 36 chr4 57131551 57132502 -145195845 + L1MB1 LINE L1 5372 6332 -2 457 210 60 72 chr4 57132565 57132619 -145195728 + L2 LINE L2 3107 3160 -153 550 223 127 6 chr4 57132619 57132776 -145195571 + MER104 DNA MER2_type 4 179 -1 457 210 60 72 chr4 57132776 57132888 -145195459 + L2 LINE L2 3160 3271 -42 195 42 0 0 chr4 57132940 57132964 -145195383 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 480 196 0 37 chr4 57133835 57133942 -145194405 - ORSL DNA AcHobo -24 251 149 260 298 66 8 chr4 57134249 57134370 -145193977 - MIR SINE MIR -7 255 128 183 42 0 0 chr4 57134430 57134454 -145193893 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1577 119 123 8 chr4 57134522 57134773 -145193574 - AluSx SINE Alu -11 301 22 2671 164 20 7 chr4 57135131 57135582 -145192765 + MSTB2 LTR MaLR 1 457 0 189 375 78 39 chr4 57135648 57135776 -145192571 - L2 LINE L2 0 3272 3140 * 983 291 87 45 chr4 57135774 57136329 -145192018 + L2 LINE L2 2574 3192 -121 2318 116 3 0 chr4 57136329 57136639 -145191708 - AluSx SINE Alu -1 311 1 983 291 87 45 chr4 57136639 57136767 -145191580 + L2 LINE L2 3192 3313 0 370 329 93 55 chr4 57136872 57137259 -145191088 - L2 LINE L2 -235 3037 2626 913 283 113 27 chr4 57137394 57137801 -145190546 - L2 LINE L2 -4 3309 2868 2195 136 0 0 chr4 57137838 57138148 -145190199 - AluSx SINE Alu -2 310 1 3388 264 123 41 chr4 57138155 57139675 -145188672 - L2 LINE L2 -536 2778 1135 284 283 167 0 chr4 57139712 57139832 -145188515 - L2 LINE L2 -947 2367 2228 251 361 41 21 chr4 57139879 57139976 -145188371 - L2 LINE L2 -32 3240 3142 388 308 0 0 chr4 57139992 57140096 -145188251 + Charlie7 DNA MER1_type 1 104 -2508 * 418 229 39 34 chr4 57140078 57140257 -145188090 + Charlie7 DNA MER1_type 2432 2611 -1 396 248 97 78 chr4 57140439 57140645 -145187702 + L3 LINE CR1 1367 1576 -1 506 300 40 20 chr4 57140963 57141113 -145187234 - MIR SINE MIR -109 153 1 2865 62 3 11 chr4 57141186 57141539 -145186808 - L1PA8 LINE L1 -1 6171 5822 974 295 101 36 chr4 57141592 57142039 -145186308 - MLT1J LTR MaLR -35 476 1 231 376 20 13 chr4 57142274 57142423 -145185924 - L2 LINE L2 -526 2788 2639 256 282 28 0 chr4 57142498 57142569 -145185778 + MIR SINE MIR 9 81 -181 230 267 145 38 chr4 57142625 57142756 -145185591 + MIR3 SINE MIR 64 208 0 2297 194 45 14 chr4 57143289 57143732 -145184615 + MLT1C LTR MaLR 11 467 0 307 210 48 0 chr4 57143758 57143820 -145184527 + L2 LINE L2 3249 3313 0 1212 257 77 44 chr4 57145775 57146527 -145181820 - L2 LINE L2 0 3313 2530 4323 249 66 53 chr4 57146554 57148027 -145180320 + L1MCc LINE L1 17 1508 -4915 448 222 47 53 chr4 57148044 57148215 -145180132 - MLT1L LTR MaLR -434 181 12 272 222 0 0 chr4 57148863 57148917 -145179430 - MLT1J LTR MaLR -212 299 246 290 222 0 42 chr4 57149122 57149194 -145179153 - MLT1L LTR MaLR -542 73 5 195 267 53 27 chr4 57149203 57149278 -145179069 + MIR SINE MIR 184 260 -2 620 232 36 7 chr4 57150474 57150612 -145177735 - MLT1J LTR MaLR -67 444 303 1875 180 81 3 chr4 57150621 57150966 -145177381 - MLT1B LTR MaLR -16 374 3 575 230 77 81 chr4 57150967 57151176 -145177171 - MLT1J LTR MaLR -206 305 98 480 227 85 13 chr4 57151225 57151407 -145176940 + L1ME3 LINE L1 5669 5871 -333 651 162 36 0 chr4 57151536 57151647 -145176700 - MIR SINE MIR -24 238 124 2625 119 89 5 chr4 57151661 57152056 -145176291 - MSTA LTR MaLR 0 428 1 239 244 122 22 chr4 57152335 57152425 -145175922 - L2 LINE L2 -1564 1750 1652 192 309 15 15 chr4 57152805 57152873 -145175474 - L2 LINE L2 -5 3308 3241 * 318 250 125 17 chr4 57152865 57152985 -145175362 - MIR3 SINE MIR 0 208 76 465 221 97 14 chr4 57153192 57153397 -145174950 + L1ME3 LINE L1 5640 5871 -333 871 140 53 0 chr4 57153526 57153676 -145174671 - MIR SINE MIR -24 238 81 294 274 94 9 chr4 57154520 57154626 -145173721 - MIR SINE MIR -39 223 109 1706 149 0 0 chr4 57154992 57155240 -145173107 + AluSx SINE Alu 1 248 -64 325 213 65 65 chr4 57155475 57155630 -145172717 + HAL1b LINE L1 1187 1341 -7 278 294 33 11 chr4 57156160 57156252 -145172095 + L3b LINE CR1 1388 1481 -102 437 159 0 0 chr4 57156611 57156680 -145171667 - MER3 DNA MER1_type -1 208 140 922 330 20 6 chr4 57157842 57158185 -145170162 - LTR16B LTR ERVL -74 390 43 243 83 0 0 chr4 57158185 57158221 -145170126 + MLT2D LTR ERVL 1 36 -361 332 236 14 28 chr4 57158246 57158390 -145169957 + GA-rich Low_complexity Low_complexity 4 145 0 2332 208 22 20 chr4 57158391 57158848 -145169499 - MLT2B2 LTR ERVL -57 458 1 373 125 0 0 chr4 57158885 57158941 -145169406 - MADE1 DNA Mariner 0 80 25 31964 99 8 25 chr4 57158942 57165423 -145162924 + L1PA7 LINE L1 2 6461 -8 262 71 24 0 chr4 57165423 57165465 -145162882 - MADE1 DNA Mariner -37 43 1 1505 144 120 4 chr4 57165485 57165769 -145162578 + MLT2D LTR ERVL 70 480 -40 576 275 61 55 chr4 57166488 57166889 -145161458 - MLT1L LTR MaLR 0 615 108 193 293 0 40 chr4 57167004 57167079 -145161268 + MIR SINE MIR 64 135 -127 351 321 126 26 chr4 57167663 57168012 -145160335 + L1MC4a LINE L1 5527 5910 -1898 725 171 19 28 chr4 57168012 57168166 -145160181 - MLT1H LTR MaLR 0 549 431 266 49 0 24 chr4 57168360 57168401 -145159946 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 2139 111 19 16 chr4 57168401 57168716 -145159631 - L1PA16 LINE L1 -26 6140 5825 468 229 29 35 chr4 57168716 57168841 -145159506 - MLT1H LTR MaLR -376 173 30 2612 222 17 13 chr4 57168841 57169381 -145158966 + MLT1F LTR MaLR 1 542 0 468 229 29 35 chr4 57169381 57169401 -145158946 - MLT1H LTR MaLR -519 30 11 28 0 0 0 chr4 57169580 57169608 -145158739 + AT_rich Low_complexity Low_complexity 1 28 0 275 311 101 8 chr4 57170851 57170970 -145157377 + MIR SINE MIR 21 150 -58 2241 90 10 7 chr4 57171583 57171884 -145156463 + AluSq SINE Alu 1 302 -11 210 366 98 0 chr4 57172933 57173015 -145155332 - L2 LINE L2 -20 3252 3163 1030 323 92 42 chr4 57173170 57173968 -145154379 - L2 LINE L2 -237 3035 2197 538 268 77 12 chr4 57175984 57176152 -145152195 + MIR SINE MIR 76 254 -8 360 43 0 0 chr4 57177142 57177188 -145151159 + (TC)n Simple_repeat Simple_repeat 1 46 0 629 340 42 16 chr4 57178052 57178296 -145150051 + MIR SINE MIR 2 255 -7 773 160 91 53 chr4 57178603 57178790 -145149557 - L1MC4 LINE L1 -1390 6652 6459 351 324 144 37 chr4 57179267 57179671 -145148676 - L2 LINE L2 0 3272 2826 560 275 52 64 chr4 57179711 57179944 -145148403 + MIR SINE MIR 18 247 -15 5330 156 27 9 chr4 57180599 57181616 -145146731 + L1MB3 LINE L1 5149 6182 -1 192 152 0 0 chr4 57181802 57181835 -145146512 + GA-rich Low_complexity Low_complexity 2 34 0 514 250 23 8 chr4 57182507 57182639 -145145708 + MER102b DNA MER1_type 56 189 -152 299 214 0 71 chr4 57182641 57182725 -145145622 - L2 LINE L2 -1 3271 3194 266 132 11 132 chr4 57182891 57182982 -145145365 + MER102b DNA MER1_type 251 330 -11 1981 152 0 16 chr4 57184780 57185095 -145143252 - AluSx SINE Alu -2 310 1 603 284 100 26 chr4 57185316 57185545 -145142802 - MIR SINE MIR 0 262 17 204 283 0 0 chr4 57185547 57185593 -145142754 + GA-rich Low_complexity Low_complexity 5 50 0 1978 152 7 0 chr4 57185761 57186058 -145142289 + AluJo SINE Alu 1 299 -13 1085 228 33 0 chr4 57186061 57186272 -145142075 - MER20 DNA MER1_type 0 219 2 1622 170 0 11 chr4 57186964 57187229 -145141118 - AluJo SINE Alu -8 304 43 1439 227 60 23 chr4 57187229 57187645 -145140702 + L1ME1 LINE L1 5698 6289 -45 2005 141 3 19 chr4 57189148 57189460 -145138887 - AluSx SINE Alu -5 307 1 557 186 0 0 chr4 57189608 57189705 -145138642 + MER82 DNA MER2_type 98 194 -459 4364 109 16 2 chr4 57189787 57190411 -145137936 - L1PA16 LINE L1 -79 6087 5455 2278 216 37 4 chr4 57190411 57190865 -145137482 + MER82 DNA MER2_type 183 651 -2 201 176 40 149 chr4 57191393 57191420 -145136927 + MIR SINE MIR 122 150 -112 609 231 5 59 chr4 57191420 57191606 -145136741 + MER104 DNA MER2_type 1 176 -4 201 176 40 149 chr4 57191606 57191652 -145136695 + MIR SINE MIR 150 187 -75 246 263 135 30 chr4 57192586 57192719 -145135628 - MIR SINE MIR -34 228 82 219 69 0 0 chr4 57193000 57193029 -145135318 + (A)n Simple_repeat Simple_repeat 1 29 0 300 336 63 7 chr4 57193138 57193281 -145135066 - MIR3 SINE MIR -56 152 2 24 32 0 0 chr4 57193651 57193682 -145134665 + AT_rich Low_complexity Low_complexity 1 31 0 1624 154 38 63 chr4 57194080 57194399 -145133948 + AluJo SINE Alu 1 311 -1 226 266 70 55 chr4 57194413 57194541 -145133806 - MLT1K LTR MaLR -317 271 142 2127 104 17 3 chr4 57194668 57194957 -145133390 + AluSx SINE Alu 3 295 -17 239 306 22 37 chr4 57195332 57195466 -145132881 - MIR3 SINE MIR -74 134 3 324 321 80 62 chr4 57195958 57196182 -145132165 - MIR SINE MIR -15 247 20 296 242 81 20 chr4 57196223 57196322 -145132025 - LTR16A1 LTR ERVL 0 457 353 890 210 140 52 chr4 57196568 57196897 -145131450 - LTR16A1 LTR ERVL -99 358 1 261 306 190 16 chr4 57197326 57197447 -145130900 - MER5B DNA MER1_type -36 142 1 575 244 36 48 chr4 57197466 57197634 -145130713 - MER5B DNA MER1_type -12 166 1 3199 217 18 0 chr4 57198353 57198965 -145129382 + MER82 DNA MER2_type 31 653 0 5333 152 29 3 chr4 57200076 57201027 -145127320 - L1PB3 LINE L1 -4 6150 5178 21 0 0 0 chr4 57201576 57201597 -145126750 + AT_rich Low_complexity Low_complexity 1 21 0 199 184 61 0 chr4 57202616 57202665 -145125682 + L2 LINE L2 2654 2705 -609 219 288 41 14 chr4 57202665 57202738 -145125609 + L2 LINE L2 3239 3313 0 2946 171 28 35 chr4 57202777 57203326 -145125021 - L1MB7 LINE L1 0 6184 5638 342 0 0 0 chr4 57203326 57203364 -145124983 + (CA)n Simple_repeat Simple_repeat 2 39 0 2946 171 28 35 chr4 57203364 57203394 -145124953 - L1MB7 LINE L1 -546 5638 5609 1694 172 3 37 chr4 57203398 57203694 -145124653 - AluJb SINE Alu -26 286 1 2158 181 26 0 chr4 57203694 57204155 -145124192 - L1MB7 LINE L1 -738 5440 4968 2340 130 33 33 chr4 57204632 57204994 -145123353 - THE1B LTR MaLR 0 364 3 746 259 16 21 chr4 57205300 57205493 -145122854 + MIR SINE MIR 21 212 -50 1797 125 3 94 chr4 57205677 57206005 -145122342 + AluSx SINE Alu 3 300 -12 246 323 89 51 chr4 57207268 57207426 -145120921 - MIR3 SINE MIR -28 180 17 340 304 123 41 chr4 57207709 57207929 -145120418 - L2 LINE L2 -5 3267 3030 321 303 232 0 chr4 57207995 57208137 -145120210 - MER5A DNA MER1_type -6 183 9 620 259 0 4 chr4 57208482 57208630 -145119717 - L1PB4 LINE L1 0 6166 6024 803 213 0 0 chr4 57208761 57208911 -145119436 - MER5A DNA MER1_type -1 188 39 317 82 20 0 chr4 57208993 57209042 -145119305 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 3543 176 13 48 chr4 57209285 57210030 -145118317 + L1MB7 LINE L1 5447 6165 -19 932 201 56 85 chr4 57210081 57210158 -145118189 + MER33 DNA MER1_type 1 71 -2514 926 131 8 0 chr4 57210158 57210288 -145118059 + FLAM_C SINE Alu 1 131 -2 932 201 56 85 chr4 57210288 57210552 -145117795 + MER33 DNA MER1_type 71 324 0 250 241 90 8 chr4 57211145 57211278 -145117069 - L1ME4a LINE L1 -4 6117 5974 21 0 0 0 chr4 57211988 57212009 -145116338 + AT_rich Low_complexity Low_complexity 1 21 0 227 258 264 13 chr4 57212368 57212523 -145115824 + MIR SINE MIR 63 256 -6 186 209 0 0 chr4 57212524 57212567 -145115780 + (CTA)n Simple_repeat Simple_repeat 3 45 0 2799 96 37 5 chr4 57213042 57213447 -145114900 + L1MA2 LINE L1 5883 6300 -4 22 56 0 0 chr4 57213447 57213483 -145114864 + AT_rich Low_complexity Low_complexity 1 36 0 685 266 199 31 chr4 57213513 57213930 -145114417 - MLT1H LTR MaLR 0 549 63 263 225 56 14 chr4 57213958 57214029 -145114318 - MLT1H1 LTR MaLR -12 543 470 5181 117 75 15 chr4 57215013 57215867 -145112480 + L1PA10 LINE L1 5263 6167 -1 684 90 0 30 chr4 57216222 57216322 -145112025 + AluSg/x SINE Alu 213 309 -1 4565 78 4 0 chr4 57217388 57217936 -145110411 - MER41A LTR ERV1 0 554 5 386 302 78 62 chr4 57218372 57218506 -145109841 - L2 LINE L2 -5 3267 3137 1971 148 3 3 chr4 57218506 57218803 -145109544 + AluJb SINE Alu 1 297 -15 386 302 78 62 chr4 57218803 57218926 -145109421 - L2 LINE L2 -135 3137 3006 345 307 10 0 chr4 57218931 57219032 -145109315 + MIR SINE MIR 35 136 -126 250 321 80 22 chr4 57220171 57220308 -145108039 - L2 LINE L2 -2493 821 677 1942 146 3 7 chr4 57222038 57222340 -145106007 + AluJb SINE Alu 12 312 0 267 79 0 0 chr4 57222860 57222898 -145105449 + (TA)n Simple_repeat Simple_repeat 2 39 0 339 279 202 22 chr4 57223109 57223292 -145105055 + MIR SINE MIR 46 261 -1 409 235 59 44 chr4 57227367 57227503 -145100844 + MIR SINE MIR 89 226 -36 434 231 237 32 chr4 57228525 57228711 -145099636 + MIR SINE MIR 7 230 -32 394 280 135 20 chr4 57228754 57228954 -145099393 + MIR SINE MIR 40 262 0 531 270 25 6 chr4 57229819 57229982 -145098365 + L3 LINE CR1 1293 1458 -119 183 129 0 0 chr4 57230019 57230050 -145098297 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 320 295 54 8 chr4 57230084 57230213 -145098134 + MIR SINE MIR 128 262 0 1228 232 62 53 chr4 57231155 57231604 -145096743 - MLT1C LTR MaLR -9 458 6 394 335 30 25 chr4 57231808 57232005 -145096342 + L3 LINE CR1 942 1139 -438 402 21 0 0 chr4 57233058 57233105 -145095242 + (TTG)n Simple_repeat Simple_repeat 2 48 0 783 141 68 34 chr4 57234963 57235140 -145093207 + MER96B DNA MER1_type? 1 183 -234 2553 121 3 6 chr4 57235231 57235596 -145092751 + THE1B LTR MaLR 1 364 0 378 290 217 34 chr4 57236519 57236929 -145091418 + L3 LINE CR1 950 1434 -143 201 132 0 53 chr4 57238312 57238350 -145089997 + (GAAAA)n Simple_repeat Simple_repeat 5 40 0 1965 151 48 3 chr4 57238460 57238792 -145089555 + MER7A DNA MER2_type 1 345 -1 293 218 0 81 chr4 57239025 57239112 -145089235 + MIR SINE MIR 175 254 -8 804 163 0 0 chr4 57239322 57239445 -145088902 + FLAM_C SINE Alu 1 123 -10 195 194 42 83 chr4 57240404 57240476 -145087871 + L2 LINE L2 3154 3222 -91 2284 114 0 0 chr4 57241755 57242054 -145086293 + AluSx SINE Alu 1 299 -13 614 213 198 0 chr4 57242189 57242386 -145085961 - MIR SINE MIR -15 247 12 1628 159 23 10 chr4 57243611 57243913 -145084434 - L1MB3 LINE L1 -1 6182 5877 231 61 0 0 chr4 57244221 57244254 -145084093 + (CA)n Simple_repeat Simple_repeat 1 33 0 2072 178 17 37 chr4 57245011 57245075 -145083272 - MLT1D LTR MaLR 0 505 441 1898 162 14 0 chr4 57245075 57245371 -145082976 + AluJo SINE Alu 2 301 -11 2072 178 17 37 chr4 57245371 57245716 -145082631 - MLT1D LTR MaLR -64 441 104 1822 125 77 4 chr4 57245717 57245989 -145082358 + AluSx SINE Alu 2 293 -19 2389 81 0 0 chr4 57245991 57246289 -145082058 - AluY SINE Alu -13 298 1 306 0 0 0 chr4 57246336 57246370 -145081977 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 43718 33 22 4 chr4 57246370 57252396 -145075951 - L1PA3 LINE L1 -13 6142 8 681 174 66 0 chr4 57252396 57252517 -145075830 - MLT1D LTR MaLR -376 129 1 2418 91 0 0 chr4 57253201 57253499 -145074848 + AluSg SINE Alu 1 298 -12 1945 104 52 0 chr4 57253814 57254105 -145074242 - AluY SINE Alu 0 305 1 1576 146 14 4 chr4 57254114 57254389 -145073958 - L1MA8 LINE L1 -3 6288 6011 562 162 10 0 chr4 57255082 57255181 -145073166 - L1PA8 LINE L1 0 6172 6073 2222 127 0 0 chr4 57255508 57255808 -145072539 + AluSc SINE Alu 1 300 -9 612 299 121 57 chr4 57256149 57256620 -145071727 - MLT1J LTR MaLR 0 511 11 1516 175 7 52 chr4 57257075 57257383 -145070964 + AluJo SINE Alu 3 296 -16 488 300 0 33 chr4 57257423 57257603 -145070744 - MIR SINE MIR -56 206 33 214 226 60 36 chr4 57258174 57258258 -145070089 - MIR SINE MIR -98 164 79 468 227 166 18 chr4 57259697 57259860 -145068487 - L1MC4 LINE L1 -59 7983 7797 1251 229 74 43 chr4 57260574 57261018 -145067329 - MLT1C LTR MaLR 0 467 15 227 150 0 0 chr4 57262125 57262165 -145066182 - Charlie8 DNA MER1_type -1000 1417 1378 2402 98 0 0 chr4 57262166 57262462 -145065885 - AluSg SINE Alu -14 296 1 2371 152 27 90 chr4 57262680 57263160 -145065187 - LTR32 LTR ERVL 0 471 22 327 272 25 63 chr4 57263543 57263701 -145064646 + MER5A DNA MER1_type 14 165 -24 2397 104 0 0 chr4 57264188 57264487 -145063860 - AluSx SINE Alu -13 299 1 3813 144 55 11 chr4 57265143 57265804 -145062543 - MER50 LTR ERV1 -44 690 1 336 217 70 47 chr4 57267216 57267345 -145061002 - L1MC5 LINE L1 -30 7931 7800 266 141 103 64 chr4 57267346 57267424 -145060923 - Charlie6 DNA MER1_type -1839 1661 1581 312 208 31 0 chr4 57267443 57267573 -145060774 - L1MC5 LINE L1 -277 7684 7502 4524 94 18 2 chr4 57267852 57268480 -145059867 - L1PA14 LINE L1 -2 6159 5522 375 260 53 65 chr4 57269024 57269193 -145059154 - MER69A DNA AcHobo -8 169 3 617 229 171 5 chr4 57269522 57269727 -145058620 + MIR SINE MIR 6 244 -18 332 249 77 30 chr4 57269767 57269936 -145058411 + MER104 DNA MER2_type 4 180 0 408 217 77 7 chr4 57270348 57270459 -145057888 - MIR3 SINE MIR -7 201 80 264 281 0 0 chr4 57270453 57270510 -145057837 + MIR SINE MIR 61 117 -91 * 2209 132 3 0 chr4 57270926 57271230 -145057117 + AluSx SINE Alu 1 305 -7 449 264 162 10 chr4 57271233 57271430 -145056917 + MIR SINE MIR 28 254 -8 184 329 0 0 chr4 57271496 57271566 -145056781 - MIR SINE MIR -116 146 77 347 257 170 18 chr4 57272109 57272280 -145056067 + MIR SINE MIR 37 233 -29 2004 143 13 3 chr4 57272539 57272846 -145055501 + AluSx SINE Alu 1 310 -2 191 77 0 51 chr4 57273101 57273140 -145055207 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 407 250 353 16 chr4 57273604 57273848 -145054499 - L2 LINE L2 -12 3301 2976 762 201 15 8 chr4 57273875 57274009 -145054338 + AluJo SINE Alu 4 138 -174 2289 119 0 0 chr4 57275866 57276178 -145052169 - AluSx SINE Alu 0 312 1 1677 89 9 5 chr4 57276324 57276548 -145051799 - AluSq SINE Alu -2 311 87 1702 160 7 4 chr4 57276654 57276923 -145051424 - AluJb SINE Alu -32 280 11 992 151 6 6 chr4 57277488 57277654 -145050693 + AluJb SINE Alu 122 287 -25 267 31 0 0 chr4 57278898 57278930 -145049417 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 205 281 62 16 chr4 57281067 57281131 -145047216 + MIR SINE MIR 86 153 -55 1579 183 10 21 chr4 57282382 57282671 -145045676 - AluJo SINE Alu -22 290 5 231 284 23 34 chr4 57283092 57283180 -145045167 + MER5B DNA MER1_type 1 87 -91 1154 160 28 38 chr4 57283181 57283332 -145045015 - MER20 DNA MER1_type -9 210 60 1958 150 0 3 chr4 57283332 57283625 -145044722 + AluSx SINE Alu 1 292 -20 1154 160 28 38 chr4 57283625 57283685 -145044662 - MER20 DNA MER1_type -159 60 1 207 289 19 0 chr4 57283710 57283762 -145044585 + MER5A DNA MER1_type 112 164 -25 261 57 0 0 chr4 57284556 57284591 -145043756 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1745 115 4 0 chr4 57284603 57284838 -145043509 - AluSx SINE Alu -76 236 1 420 364 8 0 chr4 57285579 57285711 -145042636 - MIR3 SINE MIR -8 200 68 1393 154 4 13 chr4 57285917 57286150 -145042197 - AluJb SINE Alu -81 231 1 249 287 92 0 chr4 57286158 57286245 -145042102 - L1MC5 LINE L1 -138 7823 7729 466 211 213 70 chr4 57286249 57286662 -145041685 - L1ME4a LINE L1 -294 5827 5356 366 61 0 0 chr4 57287880 57287929 -145040418 + (TG)n Simple_repeat Simple_repeat 2 50 0 349 236 104 19 chr4 57288126 57288232 -145040115 - MLT1K LTR MaLR -340 248 134 1831 150 68 31 chr4 57288337 57288690 -145039657 - Tigger7 DNA MER2_type 0 2487 2122 672 162 38 0 chr4 57288692 57288797 -145039550 - Tigger7 DNA MER2_type -621 112 4 205 87 65 65 chr4 57289030 57289076 -145039271 + L2 LINE L2 3267 3312 -1 189 0 0 0 chr4 57289959 57289980 -145038367 + (T)n Simple_repeat Simple_repeat 1 21 0 278 53 0 0 chr4 57291357 57291395 -145036952 - MADE1 DNA Mariner -1 79 42 1592 157 23 4 chr4 57291568 57291829 -145036518 - AluSx SINE Alu -46 266 1 386 323 55 49 chr4 57292151 57292315 -145036032 - MER91A DNA MER1_type -17 179 15 252 288 27 0 chr4 57292520 57292593 -145035754 + MIR SINE MIR 77 151 -111 23 0 0 0 chr4 57292854 57292877 -145035470 + AT_rich Low_complexity Low_complexity 1 23 0 1927 157 0 29 chr4 57293445 57293757 -145034590 + AluSx SINE Alu 1 303 -9 399 261 87 26 chr4 57293930 57294045 -145034302 - MER5B DNA MER1_type -56 122 1 346 242 32 11 chr4 57294100 57294195 -145034152 + L1ME4a LINE L1 5936 6032 -89 212 0 0 35 chr4 57294197 57294226 -145034121 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 274 105 0 0 chr4 57294230 57294268 -145034079 - Alu SINE Alu -15 287 250 180 257 14 114 chr4 57294624 57294694 -145033653 + L2 LINE L2 3210 3272 0 1365 171 47 19 chr4 57294942 57295199 -145033148 + AluJo SINE Alu 5 268 -44 21 0 0 0 chr4 57295273 57295294 -145033053 + AT_rich Low_complexity Low_complexity 1 21 0 2127 128 7 0 chr4 57296055 57296352 -145031995 - AluSx SINE Alu -13 299 1 594 269 66 22 chr4 57297035 57297064 -145031283 + MIR SINE MIR 48 74 -188 503 219 26 26 chr4 57297064 57297178 -145031169 - MER81 DNA DNA 0 114 1 594 269 66 22 chr4 57297178 57297330 -145031017 + MIR SINE MIR 74 237 -25 216 158 0 0 chr4 57297332 57297370 -145030977 + (TG)n Simple_repeat Simple_repeat 2 39 0 361 237 21 21 chr4 57297426 57297519 -145030828 + MIR SINE MIR 59 151 -111 21 0 0 0 chr4 57297571 57297592 -145030755 + AT_rich Low_complexity Low_complexity 1 21 0 846 244 33 5 chr4 57298307 57298520 -145029827 + MIR SINE MIR 44 262 0 253 294 50 50 chr4 57299922 57300041 -145028306 - L2 LINE L2 -35 3278 3160 215 263 111 0 chr4 57300258 57300357 -145027990 + MIR SINE MIR 28 137 -71 393 276 125 86 chr4 57300459 57300691 -145027656 + L2 LINE L2 2988 3228 -44 325 234 82 109 chr4 57300723 57300789 -145027558 - MIR SINE MIR -15 247 181 1411 199 44 11 chr4 57300789 57301061 -145027286 - AluJo SINE Alu -31 281 1 325 234 82 109 chr4 57301061 57301178 -145027169 - MIR SINE MIR -81 181 69 26 0 0 0 chr4 57302085 57302111 -145026236 + AT_rich Low_complexity Low_complexity 1 26 0 2560 123 17 3 chr4 57302351 57302710 -145025637 + THE1B LTR MaLR 1 364 0 1564 233 239 24 chr4 57302739 57303587 -145024760 - L2 LINE L2 -1 3312 2261 273 286 171 19 chr4 57303592 57303759 -145024588 + MIR SINE MIR 14 208 -51 300 27 0 0 chr4 57304511 57304548 -145023799 + (CA)n Simple_repeat Simple_repeat 1 37 0 505 144 8 93 chr4 57304691 57304809 -145023538 + Charlie8 DNA MER1_type 35 142 -2275 1988 253 115 24 chr4 57306650 57307318 -145021029 - HsTC2c DNA MER2_type 0 729 1 226 290 0 14 chr4 57307489 57307558 -145020789 - MIR SINE MIR -152 110 43 331 211 218 38 chr4 57309373 57309506 -145018841 - L1ME4a LINE L1 -10 6111 5955 761 211 82 67 chr4 57310063 57310154 -145018193 - MIR SINE MIR -28 234 146 2183 103 7 13 chr4 57310154 57310456 -145017891 - AluSp SINE Alu -12 301 2 761 211 82 67 chr4 57310456 57310572 -145017775 - MIR SINE MIR -116 146 24 806 247 31 5 chr4 57310726 57310920 -145017427 - MIR SINE MIR -62 200 2 267 277 106 0 chr4 57311297 57311391 -145016956 + L2 LINE L2 3210 3313 0 2353 101 0 3 chr4 57311478 57311784 -145016563 + AluSq SINE Alu 1 305 -8 234 0 0 0 chr4 57311858 57311884 -145016463 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 513 0 0 0 chr4 57311883 57311940 -145016407 + (TC)n Simple_repeat Simple_repeat 1 57 0 1555 181 25 4 chr4 57312125 57312428 -145015919 + AluJo SINE Alu 1 309 0 1751 155 14 20 chr4 57313566 57313863 -145014484 - AluJo SINE Alu -17 295 1 786 83 0 0 chr4 57313950 57314046 -145014301 + AluSp SINE Alu 1 96 -217 2480 34 40 7 chr4 57314046 57314344 -145014003 + AluY SINE Alu 1 308 -3 1554 100 13 35 chr4 57314345 57314574 -145013773 + AluSp SINE Alu 85 308 -5 308 77 0 0 chr4 57314868 57314907 -145013440 - AluJ/FLAM SINE Alu -201 101 63 22 56 0 0 chr4 57314974 57315010 -145013337 + AT_rich Low_complexity Low_complexity 1 36 0 612 178 219 14 chr4 57315078 57315224 -145013123 - MER5B DNA MER1_type -2 176 1 334 157 43 14 chr4 57316252 57316322 -145012025 - MER112 DNA MER1_type -11 249 178 25 31 0 0 chr4 57316358 57316390 -145011957 + AT_rich Low_complexity Low_complexity 1 32 0 453 212 35 0 chr4 57316415 57316528 -145011819 - MER112 DNA MER1_type -143 117 1 515 248 60 30 chr4 57316574 57316707 -145011640 + MIR SINE MIR 126 262 0 213 39 0 0 chr4 57316817 57316843 -145011504 + (TA)n Simple_repeat Simple_repeat 2 27 0 1640 194 0 4 chr4 57316843 57317122 -145011225 - AluJo SINE Alu -21 291 14 21 0 0 0 chr4 57319798 57319819 -145008528 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 57320091 57320112 -145008235 + AT_rich Low_complexity Low_complexity 1 21 0 1427 177 52 55 chr4 57320314 57320676 -145007671 - MER46B DNA MER2_type 0 236 1 202 340 85 11 chr4 57321404 57321498 -145006849 - MER5A DNA MER1_type -6 183 83 201 239 0 0 chr4 57322219 57322265 -145006082 + CT-rich Low_complexity Low_complexity 1 46 0 2543 114 94 29 chr4 57323800 57324246 -145004101 - L1MA7 LINE L1 0 6291 5817 1956 119 41 0 chr4 57324461 57324756 -145003591 - AluJb SINE Alu -5 307 1 21 57 0 0 chr4 57325583 57325618 -145002729 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr4 57325728 57325752 -145002595 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 441 186 106 44 chr4 57325760 57325873 -145002474 - MER94 DNA DNA 0 134 15 185 304 29 29 chr4 57326128 57326197 -145002150 + L3 LINE CR1 115 183 -1394 2262 130 0 6 chr4 57326233 57326548 -145001799 + AluSq SINE Alu 1 313 0 654 285 123 9 chr4 57326699 57326927 -145001420 - MIR SINE MIR -1 261 8 1257 198 80 10 chr4 57327243 57327531 -145000816 - L1MB4 LINE L1 0 6180 5873 1903 167 88 56 chr4 57328183 57328591 -144999756 - Charlie1b DNA MER1_type -2238 523 95 2165 115 14 0 chr4 57328591 57328887 -144999460 - AluSp SINE Alu -13 300 1 1903 167 88 56 chr4 57328887 57328980 -144999367 - Charlie1b DNA MER1_type -2666 95 6 24 32 0 0 chr4 57329341 57329372 -144998975 + AT_rich Low_complexity Low_complexity 1 31 0 969 251 112 36 chr4 57330268 57330768 -144997579 - MLT1E LTR MaLR 0 593 4 988 132 0 0 chr4 57331027 57331163 -144997184 + AluJb SINE Alu 1 136 -176 1978 133 19 13 chr4 57331164 57331473 -144996874 + AluJb SINE Alu 1 311 -1 889 194 41 12 chr4 57331643 57331813 -144996534 + MER5A DNA MER1_type 1 175 -14 249 57 0 0 chr4 57331819 57331854 -144996493 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2176 108 0 0 chr4 57331856 57332144 -144996203 - AluY SINE Alu -23 288 1 243 0 0 0 chr4 57335267 57335294 -144993053 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 288 308 165 41 chr4 57335717 57335983 -144992364 + L3b LINE CR1 1104 1402 -181 259 361 69 8 chr4 57336452 57336582 -144991765 - MIR3 SINE MIR -67 141 4 189 143 0 0 chr4 57337256 57337284 -144991063 + L3 LINE CR1 1279 1306 -271 249 320 163 0 chr4 57337405 57337552 -144990795 + MIR SINE MIR 92 262 0 1639 160 90 0 chr4 57338723 57338991 -144989356 - AluJb SINE Alu -20 292 1 2801 169 21 28 chr4 57339467 57340036 -144988311 - MER34B LTR ERV1 0 565 1 345 311 148 0 chr4 57340582 57340704 -144987643 + MIR SINE MIR 2 141 -121 21 0 0 0 chr4 57340926 57340947 -144987400 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr4 57341059 57341088 -144987259 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 237 203 17 0 chr4 57341655 57341714 -144986633 - HAL1 LINE L1 -340 2167 2108 1912 147 43 0 chr4 57341772 57342118 -144986229 - MER46B DNA MER2_type 0 236 1 726 256 142 14 chr4 57342605 57342824 -144985523 - MIR SINE MIR -10 252 6 1225 276 144 54 chr4 57342824 57344599 -144983748 - L1M4 LINE L1 -1548 4598 2665 745 175 98 14 chr4 57344663 57344806 -144983541 + FRAM SINE Alu 6 160 -16 347 320 57 26 chr4 57344809 57345083 -144983264 - L1M4 LINE L1 -3538 2608 2317 2076 111 3 33 chr4 57345083 57345390 -144982957 - AluSx SINE Alu -14 298 1 347 320 57 26 chr4 57345390 57345502 -144982845 - L1M4 LINE L1 -3829 2317 2210 2107 119 7 0 chr4 57346005 57346298 -144982049 - AluSg SINE Alu -14 296 2 225 224 28 126 chr4 57346396 57346437 -144981910 - HAL1 LINE L1 -908 1599 1556 2025 138 10 0 chr4 57346437 57346735 -144981612 - AluSx SINE Alu -11 301 1 225 224 28 126 chr4 57346735 57346836 -144981511 - HAL1 LINE L1 -951 1556 1471 258 183 0 0 chr4 57347119 57347190 -144981157 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 448 228 94 23 chr4 57347418 57347589 -144980758 - Charlie2 DNA MER1_type 0 2862 2680 395 135 27 54 chr4 57347604 57347678 -144980669 - AluJo SINE Alu -14 288 217 * 723 117 0 0 chr4 57347672 57347775 -144980572 + Tigger1 DNA MER2_type 990 1092 -1326 749 192 0 8 chr4 57347801 57347931 -144980416 - AluJo SINE Alu -97 215 87 531 243 92 50 chr4 57347931 57348248 -144980099 - Charlie2 DNA MER1_type -179 2683 2354 1758 156 73 0 chr4 57348253 57348555 -144979792 + MER7A DNA MER2_type 25 346 0 5987 119 25 57 chr4 57348680 57349785 -144978562 - Tigger1 DNA MER2_type -1150 1268 199 878 98 23 0 chr4 57349742 57349875 -144978472 - HSMAR2 DNA Mariner -1165 137 2 * 423 270 179 19 chr4 57351211 57351424 -144976923 - MIR SINE MIR -12 250 4 21 0 0 0 chr4 57352552 57352573 -144975774 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4 57353394 57353414 -144974933 + (T)n Simple_repeat Simple_repeat 1 20 0 197 160 40 20 chr4 57357668 57357718 -144970629 - L2 LINE L2 -76 3237 3187 22 0 0 0 chr4 57358398 57358420 -144969927 + AT_rich Low_complexity Low_complexity 1 22 0 418 165 110 28 chr4 57358698 57358807 -144969540 - MER5C DNA MER1_type -2 322 205 43049 44 6 3 chr4 57360740 57366879 -144961468 + L1PA4 LINE L1 6 6153 -2 23 0 0 0 chr4 57366962 57366985 -144961362 + AT_rich Low_complexity Low_complexity 1 23 0 219 103 0 0 chr4 57367044 57367083 -144961264 + (CAA)n Simple_repeat Simple_repeat 1 39 0 222 37 0 0 chr4 57367465 57367492 -144960855 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 3108 114 0 2 chr4 57367742 57368197 -144960150 + L1PA13 LINE L1 5703 6156 -7 341 307 39 13 chr4 57368340 57368493 -144959854 + HAL1b LINE L1 369 525 -823 975 201 98 0 chr4 57368683 57368887 -144959460 + MER58A DNA MER1_type 1 224 0 2254 107 0 3 chr4 57369149 57369448 -144958899 - AluSx SINE Alu -14 298 1 2052 139 0 3 chr4 57370395 57370696 -144957651 + AluSx SINE Alu 1 300 -12 377 301 116 0 chr4 57370744 57370890 -144957457 - MER91A DNA MER1_type -33 163 1 252 279 16 0 chr4 57371733 57371794 -144956553 + L2 LINE L2 3206 3267 -5 623 183 78 0 chr4 57373456 57373571 -144954776 - FLAM_C SINE Alu -19 124 1 207 193 36 36 chr4 57374820 57374903 -144953444 + (TTAA)n Simple_repeat Simple_repeat 1 83 0 3282 105 14 0 chr4 57376803 57377241 -144951106 + L1PB3 LINE L1 5710 6153 -1 2609 117 31 0 chr4 57377402 57377754 -144950593 + THE1B LTR MaLR 2 364 0 1036 228 42 15 chr4 57378256 57378519 -144949828 + MLT1A1 LTR MaLR 1 270 -95 1887 132 0 0 chr4 57378673 57378939 -144949408 + AluSx SINE Alu 35 300 -12 1161 155 10 5 chr4 57380542 57380742 -144947605 - 7SLRNA srpRNA srpRNA -119 201 1 11241 111 24 33 chr4 57382301 57383231 -144945116 + Tigger1 DNA MER2_type 56 964 -1454 2250 96 0 20 chr4 57383231 57383534 -144944813 - AluSx SINE Alu -15 297 1 11241 111 24 33 chr4 57383534 57384328 -144944019 + Tigger1 DNA MER2_type 964 1764 -654 991 74 0 0 chr4 57384329 57384451 -144943896 + AluY SINE Alu 174 295 -16 3810 114 67 26 chr4 57384451 57385093 -144943254 + Tigger1 DNA MER2_type 1751 2418 0 199 288 15 0 chr4 57385196 57385262 -144943085 + MIR SINE MIR 195 261 -1 526 284 21 58 chr4 57385710 57385803 -144942544 + MIR SINE MIR 61 145 -117 1650 171 27 30 chr4 57385803 57386102 -144942245 + AluJb SINE Alu 3 300 -12 526 284 21 58 chr4 57386102 57386198 -144942149 + MIR SINE MIR 145 243 -19 211 252 92 101 chr4 57387221 57387340 -144941007 + MIR SINE MIR 21 138 -70 1814 166 37 0 chr4 57387925 57388220 -144940127 + AluJb SINE Alu 1 306 -6 231 333 133 24 chr4 57388332 57388497 -144939850 - L2 LINE L2 -256 3016 2834 294 324 23 6 chr4 57388909 57389085 -144939262 + CT-rich Low_complexity Low_complexity 2 180 0 258 305 0 0 chr4 57390393 57390498 -144937849 + (CA)n Simple_repeat Simple_repeat 2 106 0 2206 108 3 3 chr4 57391536 57391831 -144936516 + AluSx SINE Alu 1 295 -17 1882 162 45 11 chr4 57392154 57392512 -144935835 - L1MD1 LINE L1 -13 6229 5860 2290 113 57 28 chr4 57392966 57393320 -144935027 - THE1B LTR MaLR 0 364 1 208 355 102 18 chr4 57393387 57393553 -144934794 - L2 LINE L2 -483 2831 2652 2197 110 7 0 chr4 57394113 57394405 -144933942 + AluSg SINE Alu 1 294 -16 629 265 191 64 chr4 57394425 57394836 -144933511 + L2 LINE L2 2218 2575 -738 333 0 0 0 chr4 57394836 57394873 -144933474 + (TC)n Simple_repeat Simple_repeat 1 37 0 629 265 191 64 chr4 57394873 57395228 -144933119 + L2 LINE L2 2575 3107 -206 1074 92 7 7 chr4 57395293 57395435 -144932912 + AluSq/x SINE Alu 1 142 -171 884 289 72 29 chr4 57396120 57396494 -144931853 - L3 LINE CR1 -1 1576 1187 255 296 112 0 chr4 57399535 57399633 -144928714 + L2 LINE L2 3160 3268 -4 219 69 0 0 chr4 57399940 57399969 -144928378 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 464 298 26 33 chr4 57401074 57401469 -144926878 - LTR16B LTR ERVL -11 453 1 218 175 11 0 chr4 57401842 57401892 -144926455 + MIR SINE MIR 92 144 -64 2502 132 72 8 chr4 57402297 57402698 -144925649 - MSTA LTR MaLR 0 428 2 774 220 45 25 chr4 57403884 57404105 -144924242 - MLT1G1 LTR MaLR -325 224 1 2948 179 55 35 chr4 57404153 57404841 -144923506 - L1MA9 LINE L1 -33 6279 5578 12028 166 20 6 chr4 57404871 57405308 -144923039 + L1PA15 LINE L1 3063 3493 -2672 243 22 44 22 chr4 57405308 57405353 -144922994 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 12028 166 20 6 chr4 57405353 57407844 -144920503 + L1PA15 LINE L1 3493 6029 -136 1051 173 14 10 chr4 57407834 57408042 -144920305 + L1P LINE L1 4717 4925 -1221 * 765 141 0 0 chr4 57408018 57408139 -144920208 + L1PA15 LINE L1 6045 6165 0 * 29 47 0 0 chr4 57408171 57408214 -144920133 + AT_rich Low_complexity Low_complexity 1 43 0 266 111 71 30 chr4 57408384 57408483 -144919864 + (TA)n Simple_repeat Simple_repeat 1 103 0 272 143 39 32 chr4 57408483 57408637 -144919710 + (TTATA)n Simple_repeat Simple_repeat 2 156 0 23 54 0 0 chr4 57408637 57408674 -144919673 + AT_rich Low_complexity Low_complexity 1 37 0 328 314 255 16 chr4 57408725 57408913 -144919434 - MIR SINE MIR -28 234 2 312 322 91 17 chr4 57408972 57409202 -144919145 + L1MC/D LINE L1 2689 2935 -3211 2521 46 0 7 chr4 57409281 57409583 -144918764 + AluY SINE Alu 9 308 -3 371 250 120 47 chr4 57409866 57410250 -144918097 + L1MC/D LINE L1 4163 4574 -1572 544 67 67 0 chr4 57410456 57410531 -144917816 - MADE1 DNA Mariner 0 80 1 799 309 55 37 chr4 57410850 57411397 -144916950 + L1MC/D LINE L1 5264 5820 -1988 972 122 0 8 chr4 57411401 57411532 -144916815 + AluJo SINE Alu 19 148 -164 304 58 0 115 chr4 57411535 57411587 -144916760 - AluJo SINE Alu -161 141 96 1034 196 0 0 chr4 57411587 57411750 -144916597 + AluJo SINE Alu 140 302 0 7086 170 32 25 chr4 57411952 57414100 -144914247 + L1MA7 LINE L1 3900 6063 -228 390 21 0 0 chr4 57414100 57414147 -144914200 + (TTTTG)n Simple_repeat Simple_repeat 3 49 0 7086 170 32 25 chr4 57414147 57414328 -144914019 + L1MA7 LINE L1 6063 6241 -50 359 328 52 0 chr4 57414506 57414622 -144913725 + L2 LINE L2 3147 3268 -4 189 0 0 0 chr4 57414696 57414717 -144913630 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 285 138 0 22 chr4 57414717 57414772 -144913575 - AluJo SINE Alu -20 282 240 842 192 16 22 chr4 57414777 57414959 -144913388 - AluJo SINE Alu -131 181 1 1140 300 92 54 chr4 57415208 57415856 -144912491 - L2 LINE L2 -620 2694 2005 2057 143 101 18 chr4 57415856 57416192 -144912155 - THE1B LTR MaLR 0 364 1 1140 300 92 54 chr4 57416192 57416392 -144911955 - L2 LINE L2 -1309 2005 1814 193 315 63 35 chr4 57416471 57416614 -144911733 - L2 LINE L2 -1368 1946 1800 192 77 0 0 chr4 57416888 57416914 -144911433 + (TG)n Simple_repeat Simple_repeat 1 26 0 1721 166 9 18 chr4 57417452 57417778 -144910569 - MER33 DNA MER1_type 0 324 2 480 254 127 41 chr4 57417839 57417936 -144910411 - MIR SINE MIR -6 256 169 1978 171 0 0 chr4 57417936 57418240 -144910107 - AluJb SINE Alu -8 304 1 480 254 127 41 chr4 57418240 57418339 -144910008 - MIR SINE MIR -93 169 43 504 347 55 28 chr4 57418638 57419001 -144909346 + L2 LINE L2 2831 3203 -69 506 202 0 0 chr4 57419728 57419817 -144908530 - MER58B DNA MER1_type -3 338 250 329 319 78 14 chr4 57419819 57419960 -144908387 + MIR SINE MIR 83 232 -30 31061 34 0 1 chr4 57420201 57424654 -144903693 + L1PA3 LINE L1 1706 6155 0 538 219 9 0 chr4 57424663 57424768 -144903579 - MER7A DNA MER2_type -242 104 1 2186 138 39 36 chr4 57424983 57425346 -144903001 + THE1B LTR MaLR 1 364 0 466 299 0 8 chr4 57425353 57425470 -144902877 + L2 LINE L2 3193 3308 -5 637 264 146 9 chr4 57425570 57425790 -144902557 + MLT1J LTR MaLR 227 476 -35 23 0 0 0 chr4 57425900 57425923 -144902424 + AT_rich Low_complexity Low_complexity 1 23 0 1018 310 85 26 chr4 57425953 57426446 -144901901 - MLT1K LTR MaLR -65 523 2 443 238 9 9 chr4 57426454 57426559 -144901788 - L2 LINE L2 0 3313 3209 1925 159 11 47 chr4 57426559 57426924 -144901423 - MLT1A1 LTR MaLR 0 365 14 551 265 36 6 chr4 57428087 57428253 -144900094 + MIR SINE MIR 85 255 -7 213 159 0 0 chr4 57428258 57428302 -144900045 + (CA)n Simple_repeat Simple_repeat 1 44 0 351 283 36 48 chr4 57428753 57428919 -144899428 - MIR3 SINE MIR -25 183 20 21 0 0 0 chr4 57429055 57429076 -144899271 + AT_rich Low_complexity Low_complexity 1 21 0 562 285 127 27 chr4 57429164 57429641 -144898706 - L1ME4a LINE L1 -95 6026 5494 2294 124 83 56 chr4 57429867 57430436 -144897911 - MER4A LTR ERV1 -21 444 1 364 319 41 76 chr4 57430542 57430977 -144897370 - L1ME4a LINE L1 -990 5156 4737 420 359 31 23 chr4 57431440 57431699 -144896648 - ERVL LTR ERVL -5152 612 352 604 217 92 134 chr4 57431932 57432746 -144895601 - LTR41 LTR ERVL -1 794 1 2023 134 24 0 chr4 57433308 57433600 -144894747 + AluSx SINE Alu 1 299 -13 1048 194 5 41 chr4 57433602 57433798 -144894549 + MER5A DNA MER1_type 1 189 0 449 234 78 26 chr4 57433824 57433978 -144894369 + MIR SINE MIR 86 247 -15 605 322 41 8 chr4 57434125 57434367 -144893980 - MIR SINE MIR -1 261 12 400 287 50 106 chr4 57435189 57435471 -144892876 - L2 LINE L2 0 3272 3007 380 294 68 7 chr4 57435482 57435628 -144892719 - MLT1L LTR MaLR 0 615 461 1862 158 10 14 chr4 57435628 57435920 -144892427 - MER1B DNA MER1_type 0 339 49 875 268 96 23 chr4 57435920 57436263 -144892084 - MLT1L LTR MaLR -115 500 133 606 182 6 111 chr4 57436364 57436545 -144891802 - L1MA10 LINE L1 -1 6333 6172 292 276 134 30 chr4 57437417 57437551 -144890796 - MIR SINE MIR -40 222 75 708 257 17 0 chr4 57437559 57437734 -144890613 - MIR SINE MIR 0 262 85 1827 179 155 103 chr4 57437734 57438141 -144890206 - MSTD LTR MaLR 0 396 1 276 77 0 0 chr4 57438240 57438279 -144890068 + (TG)n Simple_repeat Simple_repeat 1 39 0 2594 164 29 5 chr4 57438686 57439102 -144889245 + MSTB LTR MaLR 1 426 0 261 333 82 13 chr4 57439268 57439427 -144888920 + MLT1K LTR MaLR 412 581 -7 21 0 0 0 chr4 57440013 57440034 -144888313 + AT_rich Low_complexity Low_complexity 1 21 0 849 240 40 36 chr4 57440078 57440328 -144888019 + MIR SINE MIR 11 261 -1 240 217 0 0 chr4 57440613 57440659 -144887688 - L2 LINE L2 -1 3312 3267 575 250 81 0 chr4 57441986 57442134 -144886213 - MIR SINE MIR -3 259 100 213 121 0 0 chr4 57442727 57442760 -144885587 + (TCCA)n Simple_repeat Simple_repeat 2 34 0 409 299 47 8 chr4 57442760 57442887 -144885460 - L2 LINE L2 0 3272 3141 2889 128 70 4 chr4 57443216 57443684 -144884663 - Tigger3(Golem) DNA MER2_type -2 3027 2529 592 317 57 26 chr4 57444079 57444309 -144884038 - MIR SINE MIR -1 261 25 311 316 83 15 chr4 57445740 57445873 -144882474 + MIR SINE MIR 8 149 -113 341 239 60 47 chr4 57446013 57446281 -144882066 + MLT1J2 LTR MaLR 119 436 -14 259 303 11 0 chr4 57447376 57447465 -144880882 + MIR SINE MIR 163 252 -10 257 365 29 14 chr4 57447631 57447769 -144880578 + MIR SINE MIR 8 147 -61 478 294 88 12 chr4 57447951 57448121 -144880226 - MER5A DNA MER1_type 0 189 7 2340 112 3 3 chr4 57448549 57448861 -144879486 + AluSx SINE Alu 1 312 0 225 196 0 0 chr4 57449420 57449471 -144878876 + (AAATG)n Simple_repeat Simple_repeat 5 55 0 495 270 126 43 chr4 57450556 57450618 -144877729 - L1ME LINE L1 -331 5790 5735 2216 137 0 3 chr4 57450618 57450931 -144877416 - AluSx SINE Alu 0 312 1 495 270 126 43 chr4 57450931 57451353 -144876994 - L1ME LINE L1 -386 5735 5266 23 33 0 0 chr4 57451353 57451383 -144876964 + AT_rich Low_complexity Low_complexity 1 30 0 774 165 0 0 chr4 57451383 57451510 -144876837 - L1MA3 LINE L1 0 6305 6179 617 92 55 9 chr4 57451511 57451620 -144876727 + L1M1 LINE L1 5570 5683 -622 965 338 54 35 chr4 57452519 57453060 -144875287 + MLT1K LTR MaLR 12 562 -26 467 257 86 13 chr4 57453121 57453273 -144875074 + MIR3 SINE MIR 15 177 -31 207 264 0 103 chr4 57453969 57454056 -144874291 + MIR SINE MIR 185 262 0 946 224 175 60 chr4 57454110 57454574 -144873773 + LTR33A LTR ERVL 4 520 -3 234 0 0 0 chr4 57455042 57455068 -144873279 + (T)n Simple_repeat Simple_repeat 1 26 0 237 137 39 59 chr4 57455117 57455168 -144873179 + LTR67 LTR ERVL 104 153 -404 * 510 265 85 69 chr4 57455129 57455389 -144872958 + MLT1J LTR MaLR 110 373 -138 1554 186 35 0 chr4 57455449 57455734 -144872613 - AluJo SINE Alu -14 298 4 279 256 81 0 chr4 57455754 57455840 -144872507 + MLT1J LTR MaLR 417 509 -2 2078 159 32 27 chr4 57455974 57456307 -144872040 + MLT2D LTR ERVL 3 387 -77 1871 166 0 10 chr4 57456307 57456608 -144871739 - AluJb SINE Alu -12 300 3 2078 159 32 27 chr4 57456608 57456667 -144871680 + MLT2D LTR ERVL 387 444 -20 258 56 0 0 chr4 57456676 57456712 -144871635 + (CA)n Simple_repeat Simple_repeat 1 36 0 275 80 0 60 chr4 57456758 57456808 -144871539 + MLT2D LTR ERVL 474 520 0 472 307 85 16 chr4 57457709 57457898 -144870449 + MER58C DNA MER1_type 5 206 -9 465 283 161 10 chr4 57458186 57458391 -144869956 - MIR SINE MIR -25 237 2 1149 245 155 59 chr4 57458974 57459326 -144869021 - MLT1D LTR MaLR 0 505 98 2104 107 7 17 chr4 57459326 57459615 -144868732 - AluSx SINE Alu -25 287 2 1149 245 155 59 chr4 57459615 57459719 -144868628 - MLT1D LTR MaLR -407 98 5 465 270 95 102 chr4 57459879 57460254 -144868093 - MLT1J LTR MaLR -50 461 88 414 0 0 0 chr4 57460254 57460300 -144868047 + (TG)n Simple_repeat Simple_repeat 1 46 0 465 270 95 102 chr4 57460300 57460387 -144867960 - MLT1J LTR MaLR -423 88 2 570 276 65 30 chr4 57460465 57460697 -144867650 - MIR SINE MIR 0 262 23 213 213 21 0 chr4 57461242 57461289 -144867058 + CT-rich Low_complexity Low_complexity 5 52 0 1408 258 24 52 chr4 57463024 57463489 -144864858 - L1ME3 LINE L1 -32 6130 5679 773 67 126 0 chr4 57463940 57464059 -144864288 - LTR9B LTR ERV1 -63 581 448 1130 94 13 158 chr4 57464061 57464136 -144864211 - LTR9B LTR ERV1 -441 203 119 2004 103 26 0 chr4 57464136 57464407 -144863940 - AluSg SINE Alu -32 278 1 1130 94 13 158 chr4 57464407 57464565 -144863782 - LTR9B LTR ERV1 -525 119 4 247 253 71 10 chr4 57464698 57464797 -144863550 + L2 LINE L2 3150 3254 -18 3888 158 14 34 chr4 57465788 57466067 -144862280 - L1MC1 LINE L1 -4 6329 6046 1911 129 31 7 chr4 57466067 57466361 -144861986 - AluSg SINE Alu -9 301 1 3888 158 14 34 chr4 57466361 57466782 -144861565 - L1MC1 LINE L1 -287 6046 5643 2613 72 6 0 chr4 57467151 57467472 -144860875 + L1PA10 LINE L1 5842 6164 -4 1589 221 124 45 chr4 57467766 57467962 -144860385 + MLT1D LTR MaLR 1 180 -325 2295 101 0 13 chr4 57467962 57468278 -144860069 + AluSx SINE Alu 1 312 0 1589 221 124 45 chr4 57468278 57468547 -144859800 + MLT1D LTR MaLR 180 503 -2 279 204 0 0 chr4 57468616 57468665 -144859682 + LTR67 LTR ERVL 12 60 -497 1019 246 124 29 chr4 57469364 57469775 -144858572 + MLT1J2 LTR MaLR 1 450 0 920 125 0 8 chr4 57470082 57470210 -144858137 - FLAM_C SINE Alu -2 131 5 690 284 112 32 chr4 57470284 57470848 -144857499 - L1ME4a LINE L1 -217 5904 5296 526 143 19 48 chr4 57470920 57471025 -144857322 - L2 LINE L2 -6 3307 3206 218 292 23 69 chr4 57471055 57471185 -144857162 + L2 LINE L2 3136 3259 -13 390 216 144 102 chr4 57471331 57471498 -144856849 + MER5B DNA MER1_type 4 177 -1 287 129 145 16 chr4 57471747 57471809 -144856538 + L2 LINE L2 3189 3258 -55 735 264 79 58 chr4 57474071 57474114 -144854233 - MLT1K LTR MaLR 0 588 547 1862 144 24 7 chr4 57474114 57474406 -144853941 - AluSx SINE Alu -15 297 1 735 264 79 58 chr4 57474406 57474654 -144853693 - MLT1K LTR MaLR -41 547 291 211 213 0 43 chr4 57475199 57475246 -144853101 - MER5A DNA MER1_type -32 157 113 403 278 37 47 chr4 57475561 57475778 -144852569 + MLT1H LTR MaLR 75 292 -117 251 248 99 30 chr4 57475820 57475921 -144852426 + MLT1H LTR MaLR 423 530 -19 200 242 168 21 chr4 57476195 57476290 -144852057 - L2 LINE L2 -11 3261 3153 981 180 35 0 chr4 57476651 57476823 -144851524 - MER45A DNA AcHobo 0 178 1 590 156 0 0 chr4 57477747 57477837 -144850510 + AluSg/x SINE Alu 196 285 -27 550 26 26 0 chr4 57477837 57477913 -144850434 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 419 207 12 0 chr4 57477924 57478006 -144850341 + MER5A DNA MER1_type 86 168 -21 1966 172 42 26 chr4 57478038 57478422 -144849925 - MLT1B LTR MaLR 0 390 1 291 289 88 7 chr4 57478477 57478680 -144849667 - MIR SINE MIR 0 262 12 285 234 48 57 chr4 57478734 57478858 -144849489 - L1MC/D LINE L1 -1963 5845 5723 5017 173 40 25 chr4 57478866 57479324 -144849023 - L1MA9 LINE L1 -38 6274 5825 279 0 0 0 chr4 57479324 57479355 -144848992 + (TG)n Simple_repeat Simple_repeat 2 32 0 5017 173 40 25 chr4 57479355 57480338 -144848009 - L1MA9 LINE L1 -487 5825 4805 218 271 17 0 chr4 57480673 57480732 -144847615 + L2 LINE L2 3196 3255 -17 2080 175 3 6 chr4 57480814 57481152 -144847195 + MER1B DNA MER1_type 1 337 0 317 316 220 24 chr4 57481973 57482182 -144846165 - MIR SINE MIR 0 262 13 2214 128 0 0 chr4 57483733 57484030 -144844317 - AluSx SINE Alu -13 299 3 263 93 23 0 chr4 57484069 57484112 -144844235 + (CA)n Simple_repeat Simple_repeat 1 44 0 459 229 70 55 chr4 57484929 57485130 -144843217 - MLT1J LTR MaLR -30 466 213 541 287 11 33 chr4 57485163 57485322 -144843025 - MLT1J LTR MaLR -312 199 43 2140 129 7 0 chr4 57485322 57485632 -144842715 + AluSx SINE Alu 1 312 0 541 287 11 33 chr4 57485632 57485653 -144842694 - MLT1J LTR MaLR -468 43 23 949 261 120 7 chr4 57486550 57486833 -144841514 + MLT1J LTR MaLR 1 315 -196 952 134 34 68 chr4 57486952 57486990 -144841357 + THE1C LTR MaLR 175 213 -162 204 40 0 0 chr4 57486990 57487015 -144841332 + (TC)n Simple_repeat Simple_repeat 1 25 0 952 134 34 68 chr4 57487015 57487186 -144841161 + THE1C LTR MaLR 213 373 -2 441 235 134 0 chr4 57488097 57488216 -144840131 - MLT1J LTR MaLR -450 143 9 22 0 0 0 chr4 57489873 57489895 -144838452 + AT_rich Low_complexity Low_complexity 1 22 0 253 185 37 0 chr4 57490439 57490493 -144837854 + MER5A DNA MER1_type 9 64 -125 1644 163 35 3 chr4 57490496 57490912 -144837435 + L1MB7 LINE L1 5057 5490 -688 1229 180 33 25 chr4 57490887 57491131 -144837216 + L1MB7 LINE L1 5808 6053 -131 * 911 199 8 3 chr4 57491236 57491853 -144836494 + ALR/Alpha Satellite centromeric 1 619 -14 1201 176 5 1 chr4 57491864 57493719 -144834628 + ALR/Alpha Satellite centromeric 1 1862 -14 1160 184 6 1 chr4 57493730 57495584 -144832763 + ALR/Alpha Satellite centromeric 1 1862 -14 1211 179 7 2 chr4 57495595 57497447 -144830900 + ALR/Alpha Satellite centromeric 1 1860 -14 1179 181 6 1 chr4 57497458 57499313 -144829034 + ALR/Alpha Satellite centromeric 1 1863 -14 1201 175 6 1 chr4 57499324 57501178 -144827169 + ALR/Alpha Satellite centromeric 1 1861 -14 1186 160 4 0 chr4 57501189 57502207 -144826140 + ALR/Alpha Satellite centromeric 1 1022 0 184 341 49 57 chr4 57502868 57502991 -144825356 + MIR SINE MIR 28 149 -113 1032 181 13 48 chr4 57503344 57503571 -144824776 - MER20 DNA MER1_type 0 219 1 279 222 14 0 chr4 57503579 57503651 -144824696 - MIR SINE MIR -72 190 118 287 217 75 19 chr4 57503884 57503990 -144824357 - L2 LINE L2 -1245 2069 1958 1812 140 59 0 chr4 57505256 57505527 -144822820 + AluSx SINE Alu 1 287 -25 24 0 0 0 chr4 57505626 57505650 -144822697 + AT_rich Low_complexity Low_complexity 1 24 0 260 278 50 83 chr4 57505744 57505924 -144822423 - MIR SINE MIR -79 183 10 1879 178 81 14 chr4 57505930 57506301 -144822046 - MSTD LTR MaLR 0 396 1 2287 104 0 0 chr4 57506590 57506878 -144821469 + AluSg SINE Alu 1 288 -22 430 197 177 44 chr4 57507608 57507811 -144820536 + L2 LINE L2 3078 3307 -6 408 20 0 0 chr4 57507812 57507861 -144820486 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 181 247 182 0 chr4 57508002 57508079 -144820268 + MIR SINE MIR 2 92 -170 1362 137 9 13 chr4 57509152 57509356 -144818991 - L1MA9 LINE L1 -321 5991 5787 333 0 0 0 chr4 57509356 57509393 -144818954 + (CA)n Simple_repeat Simple_repeat 1 37 0 1362 137 9 13 chr4 57509393 57509414 -144818933 - L1MA9 LINE L1 -525 5787 5767 1052 125 0 59 chr4 57509425 57509464 -144818883 + L1M2 LINE L1 5403 5443 -721 1775 162 0 37 chr4 57509464 57509761 -144818586 + AluSx SINE Alu 1 286 -26 279 0 0 0 chr4 57509761 57509792 -144818555 + (CA)n Simple_repeat Simple_repeat 2 32 0 1052 125 0 59 chr4 57509792 57509943 -144818404 + L1M2 LINE L1 5441 5582 -582 272 360 43 12 chr4 57510084 57510248 -144818099 + MIR SINE MIR 19 187 -75 365 260 0 10 chr4 57510444 57510544 -144817803 + L1MA10 LINE L1 6171 6269 -65 1718 201 0 0 chr4 57510551 57510850 -144817497 - AluJb SINE Alu -13 299 1 332 208 0 0 chr4 57510851 57510928 -144817419 + L1MA10 LINE L1 6256 6332 -2 1104 286 64 60 chr4 57512885 57513480 -144814867 + MLT1L LTR MaLR 1 597 -18 238 266 81 24 chr4 57513698 57513822 -144814525 + MIR SINE MIR 126 256 -6 30 0 0 0 chr4 57513837 57513867 -144814480 + AT_rich Low_complexity Low_complexity 1 30 0 206 185 46 15 chr4 57514032 57514097 -144814250 + T-rich Low_complexity Low_complexity 5 71 0 7239 43 1 1 chr4 57514097 57514961 -144813386 - L1PA3 LINE L1 0 6155 5292 28829 53 1 2 chr4 57515061 57518622 -144809725 - L1PA3 LINE L1 -2582 3564 8 240 311 136 34 chr4 57518641 57518681 -144809666 - MIR SINE MIR -48 214 179 263 28 28 0 chr4 57518681 57518717 -144809630 + (TA)n Simple_repeat Simple_repeat 2 38 0 2076 130 0 7 chr4 57518717 57519009 -144809338 - AluSg SINE Alu -20 290 1 240 311 136 34 chr4 57519009 57519144 -144809203 - MIR SINE MIR -82 180 20 354 91 0 0 chr4 57519606 57519661 -144808686 + (GA)n Simple_repeat Simple_repeat 2 56 0 203 264 57 38 chr4 57519960 57520066 -144808281 + L3 LINE CR1 1451 1558 -19 2353 123 82 12 chr4 57520221 57520621 -144807726 + MSTA LTR MaLR 1 428 0 8653 189 22 9 chr4 57520621 57522190 -144806157 + MSTA-int LTR MaLR 1 1589 -62 20833 122 9 11 chr4 57522197 57525345 -144803002 + L1P LINE L1 11 3151 -2995 7333 52 0 1 chr4 57525445 57526483 -144801864 + L1PA6 LINE L1 5118 6154 0 560 106 0 12 chr4 57526485 57526570 -144801777 + MSTA-int LTR MaLR 1568 1651 0 2207 144 83 10 chr4 57526570 57526965 -144801382 + MSTA LTR MaLR 1 424 -4 1108 245 107 27 chr4 57527401 57528650 -144799697 + HAL1 LINE L1 10 1157 -1350 1376 256 72 43 chr4 57528650 57529092 -144799255 + LTR16A1 LTR ERVL 3 457 0 1108 245 107 27 chr4 57529092 57529407 -144798940 + HAL1 LINE L1 1157 1445 -1062 3657 181 44 31 chr4 57529407 57530118 -144798229 - MER72 LTR ERV1 -2 720 1 1108 245 107 27 chr4 57530118 57530285 -144798062 + HAL1 LINE L1 1445 1597 -910 1945 143 33 0 chr4 57530285 57530585 -144797762 + AluSx SINE Alu 1 310 -2 1108 245 107 27 chr4 57530585 57531033 -144797314 + HAL1 LINE L1 1597 2507 0 342 349 68 36 chr4 57532449 57532701 -144795646 + MIR SINE MIR 3 262 0 230 269 0 60 chr4 57532852 57532919 -144795428 - MIR SINE MIR -169 93 31 2024 222 65 16 chr4 57534016 57534507 -144793840 + L1ME1 LINE L1 5647 6161 -5 480 310 71 41 chr4 57534529 57535019 -144793328 + L1ME4a LINE L1 5382 5886 -235 777 256 43 17 chr4 57535053 57535287 -144793060 + MIR SINE MIR 2 241 -21 33 43 0 0 chr4 57535693 57535740 -144792607 + AT_rich Low_complexity Low_complexity 1 47 0 952 135 0 0 chr4 57536676 57536817 -144791530 + AluJb SINE Alu 1 141 -171 337 120 0 0 chr4 57537429 57537479 -144790868 + MADE1 DNA Mariner 1 50 -30 843 222 96 10 chr4 57537479 57537677 -144790670 + MIR SINE MIR 12 226 -36 2020 135 21 0 chr4 57537800 57538089 -144790258 + AluSq SINE Alu 1 295 -18 310 346 77 0 chr4 57538202 57538358 -144789989 + MIR SINE MIR 50 217 -45 22 56 0 0 chr4 57538806 57538842 -144789505 + AT_rich Low_complexity Low_complexity 1 36 0 2282 157 74 39 chr4 57539717 57540066 -144788281 + L1MA10 LINE L1 5774 6146 -188 2114 128 0 10 chr4 57540066 57540379 -144787968 - AluSx SINE Alu -2 310 1 2282 157 74 39 chr4 57540379 57540513 -144787834 + L1MA10 LINE L1 6146 6274 -60 1311 174 113 14 chr4 57540514 57540807 -144787540 - MER2 DNA MER2_type -1 344 23 305 129 0 65 chr4 57540820 57540882 -144787465 + L1MA10 LINE L1 6277 6334 0 643 309 10 101 chr4 57541357 57541843 -144786504 + L2 LINE L2 2831 3272 0 1182 258 123 15 chr4 57542973 57543373 -144784974 - MLT1J1 LTR MaLR -2 444 2 420 20 0 0 chr4 57543573 57543622 -144784725 + (CA)n Simple_repeat Simple_repeat 1 49 0 462 294 63 11 chr4 57544638 57545005 -144783342 - L1MEc LINE L1 -4109 2287 1902 1191 270 93 58 chr4 57545029 57545421 -144782926 - L1MEc LINE L1 -4579 1817 1440 1748 161 0 32 chr4 57545421 57545731 -144782616 - AluJo SINE Alu -12 300 1 1191 270 93 58 chr4 57545731 57546312 -144782035 - L1MEc LINE L1 -4956 1440 810 3578 126 37 14 chr4 57546931 57547519 -144780828 - L1MA8 LINE L1 -2 6289 5688 212 269 39 0 chr4 57547687 57547739 -144780608 - MER5A DNA MER1_type -135 54 1 238 236 225 0 chr4 57548313 57548402 -144779945 + MLT1L LTR MaLR 507 615 0 204 183 83 0 chr4 57549104 57549164 -144779183 - MIR SINE MIR -76 186 122 814 258 32 40 chr4 57549298 57549550 -144778797 - Charlie8 DNA MER1_type -2167 250 1 269 333 145 18 chr4 57550621 57550849 -144777498 - L2 LINE L2 -13 3300 3044 651 294 115 32 chr4 57551350 57551786 -144776561 + L2 LINE L2 2833 3304 -9 319 339 18 41 chr4 57551799 57551970 -144776377 - MIR SINE MIR -19 243 77 304 282 68 85 chr4 57552875 57552930 -144775417 - MIR SINE MIR -76 132 78 1627 188 0 21 chr4 57552930 57553381 -144774966 + AluJo SINE Alu 1 445 0 304 282 68 85 chr4 57553381 57553480 -144774867 - MIR SINE MIR -130 78 1 492 284 53 6 chr4 57553985 57554154 -144774193 + Charlie8 DNA MER1_type 2 178 -2239 520 204 180 28 chr4 57554465 57554720 -144773627 + MLT1H LTR MaLR 235 616 -8 309 26 0 0 chr4 57554855 57554893 -144773454 + (CA)n Simple_repeat Simple_repeat 1 38 0 392 191 138 0 chr4 57554905 57554999 -144773348 + L2 LINE L2 3207 3313 0 189 302 31 85 chr4 57555729 57555785 -144772562 + MIR SINE MIR 85 142 -120 2045 132 3 3 chr4 57555785 57556089 -144772258 + AluSx SINE Alu 1 304 -8 189 302 31 85 chr4 57556089 57556161 -144772186 + MIR SINE MIR 142 206 -56 250 213 0 0 chr4 57556440 57556487 -144771860 + MLT1K LTR MaLR 2 48 -540 21 0 0 0 chr4 57556822 57556843 -144771504 + AT_rich Low_complexity Low_complexity 1 21 0 648 232 63 55 chr4 57557239 57557493 -144770854 + MIR SINE MIR 8 247 -15 183 318 16 0 chr4 57557514 57557577 -144770770 + L3 LINE CR1 1166 1229 -348 902 180 22 142 chr4 57557951 57558268 -144770079 + MLT1A1 LTR MaLR 1 279 -86 231 308 90 13 chr4 57558374 57558452 -144769895 + ORSL DNA AcHobo 192 275 0 27 49 0 0 chr4 57559173 57559214 -144769133 + AT_rich Low_complexity Low_complexity 1 41 0 386 316 38 38 chr4 57559636 57559794 -144768553 - MIR SINE MIR -76 186 29 203 284 68 14 chr4 57560873 57560947 -144767400 + MIR SINE MIR 64 141 -67 211 184 0 68 chr4 57560947 57561050 -144767297 + GA-rich Low_complexity Low_complexity 2 97 0 1356 225 79 32 chr4 57561076 57561638 -144766709 - L1MEc LINE L1 -3633 2582 2033 43360 35 23 1 chr4 57561640 57567659 -144760688 + L1PA2 LINE L1 1 6154 -1 2306 241 61 51 chr4 57567692 57568641 -144759706 - L1MEc LINE L1 -4358 2038 1080 484 214 38 8 chr4 57568653 57568784 -144759563 + L1MC4 LINE L1 7108 7242 -800 25 0 0 0 chr4 57569011 57569036 -144759311 + AT_rich Low_complexity Low_complexity 1 25 0 355 270 102 36 chr4 57569206 57569343 -144759004 + L2 LINE L2 3168 3313 0 1778 171 0 0 chr4 57569378 57569652 -144758695 + AluJo SINE Alu 7 280 -32 330 26 0 0 chr4 57569652 57569691 -144758656 + (GAA)n Simple_repeat Simple_repeat 1 39 0 863 236 79 9 chr4 57569928 57570157 -144758190 + MIR SINE MIR 18 262 0 1680 159 40 14 chr4 57570195 57570471 -144757876 + AluSx SINE Alu 3 285 -27 439 224 84 96 chr4 57570530 57570797 -144757550 - MIR SINE MIR 0 262 16 263 204 19 17 chr4 57572379 57572455 -144755892 + FLAM_A SINE Alu 67 130 -3 430 351 96 4 chr4 57572856 57573095 -144755252 - MIR SINE MIR -1 261 1 751 248 88 13 chr4 57573238 57573464 -144754883 - MIR SINE MIR -19 243 1 656 274 28 16 chr4 57573531 57573786 -144754561 + L1MC1 LINE L1 5601 5858 -475 * 4364 30 0 0 chr4 57573562 57574102 -144754245 + L1PA3 LINE L1 5635 6174 0 255 100 25 0 chr4 57574429 57574469 -144753878 - MSTD LTR MaLR -354 42 2 22 35 0 0 chr4 57574572 57574601 -144753746 + AT_rich Low_complexity Low_complexity 1 29 0 693 172 22 52 chr4 57574704 57574838 -144753509 + FLAM_A SINE Alu 1 130 -3 735 294 27 32 chr4 57575080 57575403 -144752944 + L1MC/D LINE L1 5386 5709 -442 2474 68 7 7 chr4 57575486 57575793 -144752554 + AluSc SINE Alu 1 307 -2 504 203 148 0 chr4 57575912 57576040 -144752307 + MIR SINE MIR 116 262 0 188 261 261 0 chr4 57576617 57576705 -144751642 - L3b LINE CR1 -255 1328 1218 731 270 159 3 chr4 57577117 57577413 -144750934 + L2 LINE L2 2969 3310 -3 291 396 42 0 chr4 57577586 57577682 -144750665 + L2 LINE L2 3155 3254 -18 2207 129 0 0 chr4 57577690 57578001 -144750346 + AluSx SINE Alu 1 311 -1 390 194 46 46 chr4 57578024 57578132 -144750215 - MIR SINE MIR -31 231 124 182 277 0 0 chr4 57578395 57578442 -144749905 + L2 LINE L2 3256 3302 -11 432 147 0 39 chr4 57578446 57578548 -144749799 + (GGAA)n Simple_repeat Simple_repeat 2 99 0 645 174 13 31 chr4 57578553 57578934 -144749413 + GA-rich Low_complexity Low_complexity 1 374 0 352 253 103 20 chr4 57579593 57579739 -144748608 + MER46C DNA MER2_type 1 158 -180 1171 222 9 9 chr4 57579739 57579969 -144748378 + Tigger7 DNA MER2_type 1 230 -503 1726 179 11 11 chr4 57580004 57580289 -144748058 + AluJb SINE Alu 1 285 -27 305 214 0 24 chr4 57580291 57580375 -144747972 + GA-rich Low_complexity Low_complexity 3 84 0 * 751 92 8 8 chr4 57580356 57580475 -144747872 + (GAAA)n Simple_repeat Simple_repeat 4 122 0 475 214 10 0 chr4 57580479 57580577 -144747770 + Tigger7 DNA MER2_type 2389 2487 0 573 200 93 13 chr4 57580593 57580743 -144747604 + MER46C DNA MER2_type 164 325 -13 360 306 67 11 chr4 57580764 57580944 -144747403 - L2 LINE L2 -38 3275 3086 243 255 0 0 chr4 57581047 57581094 -144747253 + L2 LINE L2 2919 2965 -349 1886 133 7 0 chr4 57584882 57585153 -144743194 - AluSx SINE Alu -39 273 1 186 250 150 12 chr4 57586504 57586584 -144741763 - L2 LINE L2 -13 3259 3169 1996 81 4 0 chr4 57586618 57586865 -144741482 + AluSp SINE Alu 53 300 -13 2469 85 3 0 chr4 57587059 57587364 -144740983 + AluSp SINE Alu 1 306 -7 2014 158 0 0 chr4 57588243 57588534 -144739813 + AluSx SINE Alu 1 291 -21 2187 115 3 3 chr4 57588722 57589026 -144739321 + AluSg SINE Alu 1 304 -6 411 327 44 9 chr4 57589136 57589342 -144739005 + MIR SINE MIR 42 248 -14 325 42 0 21 chr4 57589789 57589837 -144738510 + MADE1 DNA Mariner 34 80 0 880 206 78 18 chr4 57589896 57590115 -144738232 + MIR SINE MIR 14 245 -17 242 341 24 0 chr4 57590125 57590207 -144738140 - MIR SINE MIR -61 147 64 5596 103 3 3 chr4 57590207 57590990 -144737357 + L1PA13 LINE L1 5381 6163 0 213 225 127 70 chr4 57591425 57591496 -144736851 + L3b LINE CR1 1404 1478 -105 291 68 136 0 chr4 57591646 57591690 -144736657 + MADE1 DNA Mariner 31 80 0 279 275 211 35 chr4 57591737 57591908 -144736439 + MIR SINE MIR 53 253 -9 328 287 107 0 chr4 57592138 57592260 -144736087 + L2 LINE L2 2616 2750 -564 1800 139 11 17 chr4 57592305 57592592 -144735755 + AluJb SINE Alu 1 285 -27 341 242 0 0 chr4 57592627 57592689 -144735658 - MER91A DNA MER1_type -42 154 93 1174 270 56 31 chr4 57592739 57593220 -144735127 + L2 LINE L2 2821 3313 0 263 321 0 0 chr4 57593552 57593636 -144734711 + MIR SINE MIR 36 119 -89 266 350 28 47 chr4 57593644 57593858 -144734489 - L2 LINE L2 -756 2558 2349 768 248 61 58 chr4 57594076 57594439 -144733908 + L2 LINE L2 2919 3282 -31 513 181 0 11 chr4 57594439 57594533 -144733814 + L2 LINE L2 3213 3305 -8 188 298 0 0 chr4 57594692 57594739 -144733608 - MIR3 SINE MIR -54 154 108 379 264 125 51 chr4 57595049 57595086 -144733261 - MIR SINE MIR -11 251 218 2498 156 34 19 chr4 57595086 57595560 -144732787 + L1MB5 LINE L1 5688 6168 -6 379 264 125 51 chr4 57595560 57595738 -144732609 - MIR SINE MIR -44 218 20 1124 166 0 0 chr4 57595992 57596167 -144732180 - FRAM SINE Alu -2 174 1 1929 141 26 10 chr4 57596200 57596505 -144731842 + AluSq SINE Alu 1 310 -3 642 216 30 0 chr4 57597960 57598094 -144730253 + MIR SINE MIR 14 151 -111 2106 117 20 3 chr4 57598113 57598413 -144729934 - AluSx SINE Alu -7 305 1 26 0 0 0 chr4 57598513 57598539 -144729808 + AT_rich Low_complexity Low_complexity 1 26 0 279 221 221 8 chr4 57598997 57599124 -144729223 - MIR SINE MIR -74 188 35 992 155 42 28 chr4 57599370 57599583 -144728764 + MER20 DNA MER1_type 4 219 0 1663 91 0 0 chr4 57599770 57599969 -144728378 + AluSx SINE Alu 1 199 -113 413 159 0 0 chr4 57599971 57600040 -144728307 + AluSx SINE Alu 239 307 -4 2219 120 0 0 chr4 57600293 57600585 -144727762 + AluSx SINE Alu 1 292 -20 1244 81 0 0 chr4 57600613 57600762 -144727585 + AluSc SINE Alu 1 149 -160 1033 98 0 0 chr4 57600820 57600963 -144727384 - L1PB1 LINE L1 -2 6149 6007 835 211 15 35 chr4 57602122 57602321 -144726026 + MIR SINE MIR 60 254 -8 658 184 74 25 chr4 57602375 57602538 -144725809 + LTR16A1 LTR ERVL 61 231 -226 586 191 157 14 chr4 57602590 57602800 -144725547 + LTR16A1 LTR ERVL 201 440 -17 328 164 0 10 chr4 57603962 57604032 -144724315 + AluJo SINE Alu 1 46 -254 2363 83 3 40 chr4 57605147 57605471 -144722876 - AluSx SINE Alu 0 312 1 1506 179 0 16 chr4 57605755 57606012 -144722335 + AluJo SINE Alu 44 296 -16 292 253 115 17 chr4 57606037 57606211 -144722136 - L1ME4a LINE L1 -78 6043 5853 2209 125 0 6 chr4 57606539 57606852 -144721495 - AluJo SINE Alu -1 311 1 298 261 150 13 chr4 57607362 57607515 -144720832 - MIR SINE MIR -79 183 10 327 239 35 18 chr4 57607727 57607840 -144720507 - MER69 DNA AcHobo 0 2526 2412 949 147 0 20 chr4 57607840 57607990 -144720357 + AluJo SINE Alu 1 147 -165 1120 158 0 0 chr4 57608220 57608391 -144719956 - AluJo SINE Alu -141 171 1 567 153 227 25 chr4 57608397 57608560 -144719787 - MER69 DNA AcHobo -150 2376 2181 * 3379 249 81 21 chr4 57608541 57609551 -144718796 - MER69 DNA AcHobo -1431 1095 25 7598 35 1 1 chr4 57610571 57612041 -144716306 + L1PA4 LINE L1 4686 6155 0 2109 112 11 0 chr4 57613095 57613394 -144714953 - AluSx SINE Alu 0 305 4 37 23 0 0 chr4 57613397 57613441 -144714906 + AT_rich Low_complexity Low_complexity 1 44 0 2006 143 7 3 chr4 57613979 57614272 -144714075 - AluSx SINE Alu -18 294 1 244 364 9 0 chr4 57614323 57614433 -144713914 + L2 LINE L2 3185 3295 -18 2244 108 0 0 chr4 57615245 57615531 -144712816 + AluSq SINE Alu 1 286 -27 7634 73 3 2 chr4 57615531 57617316 -144711031 + L1PA7 LINE L1 4355 6154 0 4049 126 37 20 chr4 57617316 57618036 -144710311 + L1P4 LINE L1 4635 5384 -777 1781 153 50 0 chr4 57618036 57618318 -144710029 + AluSx SINE Alu 1 296 -16 4049 126 37 20 chr4 57618318 57618726 -144709621 + L1P4 LINE L1 5384 5784 -377 310 579 11 11 chr4 57618889 57619126 -144709221 + polypurine Low_complexity Low_complexity 1 237 0 243 340 32 0 chr4 57619471 57619565 -144708782 + L2 LINE L2 2964 3060 -212 2262 105 10 13 chr4 57619920 57620225 -144708122 + AluSq SINE Alu 1 304 -9 2312 104 0 0 chr4 57620617 57620905 -144707442 - AluSx SINE Alu -20 292 5 437 232 0 10 chr4 57621504 57621603 -144706744 + MER5A DNA MER1_type 9 106 -83 936 281 88 38 chr4 57621991 57622390 -144705957 - MLT1H LTR MaLR -4 545 127 367 282 171 6 chr4 57622428 57622598 -144705749 + MIR SINE MIR 65 262 0 2415 139 8 8 chr4 57622628 57623003 -144705344 - THE1C LTR MaLR 0 375 1 252 0 0 0 chr4 57623122 57623150 -144705197 + (TG)n Simple_repeat Simple_repeat 2 29 0 367 57 19 0 chr4 57623190 57623243 -144705104 + L1P4 LINE L1 5423 5476 -687 400 162 0 0 chr4 57623243 57623311 -144705036 - Alu SINE Alu -1 301 234 4293 137 17 4 chr4 57623315 57624021 -144704326 + L1PA16 LINE L1 5449 6163 -3 256 125 0 0 chr4 57624025 57624065 -144704282 + L1MB5 LINE L1 6127 6166 -8 24 0 0 0 chr4 57624065 57624089 -144704258 + AT_rich Low_complexity Low_complexity 1 24 0 313 234 32 11 chr4 57624227 57624321 -144704026 + MER5A DNA MER1_type 10 105 -84 28 0 0 0 chr4 57625548 57625576 -144702771 + AT_rich Low_complexity Low_complexity 1 28 0 6816 38 2 9 chr4 57626414 57627145 -144701202 - L1P LINE L1 -2120 4026 3300 1341 26 0 0 chr4 57627145 57627299 -144701048 - L1PA3 LINE L1 -1 6154 6001 6816 38 2 9 chr4 57627299 57627408 -144700939 - L1P LINE L1 -2846 3300 3192 * 11221 40 9 1 chr4 57627400 57629117 -144699230 + L1P2 LINE L1 4034 5761 -393 265 167 26 0 chr4 57629229 57629307 -144699040 + (TA)n Simple_repeat Simple_repeat 2 81 0 1182 133 0 0 chr4 57629322 57629487 -144698860 - AluSp SINE Alu -12 301 137 1128 98 12 37 chr4 57629534 57629698 -144698649 - AluSg/x SINE Alu -15 297 138 198 281 0 81 chr4 57629753 57629894 -144698453 - MIR3 SINE MIR -3 205 79 458 220 11 0 chr4 57630078 57630169 -144698178 - L2 LINE L2 0 3272 3181 205 312 18 55 chr4 57630196 57630267 -144698080 - MIR SINE MIR 0 262 195 2197 123 0 3 chr4 57630267 57630575 -144697772 - AluSx SINE Alu -5 307 1 205 312 18 55 chr4 57630575 57630612 -144697735 - MIR SINE MIR -67 195 158 2437 30 26 0 chr4 57630910 57631214 -144697133 + SVA Other Other 12 323 -1063 290 207 174 0 chr4 57631243 57631364 -144696983 + L1ME1 LINE L1 2396 2537 -3609 236 281 70 26 chr4 57631381 57631495 -144696852 - L1ME LINE L1 -574 5592 5474 1983 119 138 8 chr4 57631504 57631873 -144696474 + MSTA LTR MaLR 12 428 0 6857 243 75 15 chr4 57631873 57632777 -144695570 - L1ME LINE L1 -686 5480 4632 2093 129 3 3 chr4 57632777 57633071 -144695276 + AluSp SINE Alu 2 295 -18 6857 243 75 15 chr4 57633071 57634935 -144693412 - L1ME LINE L1 -1534 4632 2540 1730 127 169 17 chr4 57634936 57635298 -144693049 - MSTA LTR MaLR -4 424 8 242 281 70 26 chr4 57635303 57635417 -144692930 + L1ME1 LINE L1 5474 5592 -574 1438 178 179 38 chr4 57635466 57635737 -144692610 + L1ME1 LINE L1 5593 5824 -488 1703 163 54 14 chr4 57635737 57636032 -144692315 + AluJb SINE Alu 1 307 -5 1438 178 179 38 chr4 57636032 57636267 -144692080 + L1ME1 LINE L1 5824 6312 0 1164 215 105 14 chr4 57636283 57636729 -144691618 + L1ME1 LINE L1 2705 3191 -2955 * 4014 209 67 24 chr4 57636718 57637394 -144690953 + L1ME1 LINE L1 4068 4713 -1453 900 113 0 64 chr4 57637394 57637535 -144690812 + FLAM_C SINE Alu 1 132 -1 4014 209 67 24 chr4 57637535 57638853 -144689494 + L1ME1 LINE L1 4713 6143 -23 2024 116 3 11 chr4 57638940 57639074 -144689273 + AluSq SINE Alu 2 135 -178 2243 113 3 7 chr4 57639074 57639383 -144688964 + AluSq SINE Alu 1 308 -5 2024 116 3 11 chr4 57639383 57639533 -144688814 + AluSq SINE Alu 135 284 -29 224 224 26 0 chr4 57639680 57639756 -144688591 + GA-rich Low_complexity Low_complexity 3 80 0 301 389 69 0 chr4 57639901 57640117 -144688230 + L3 LINE CR1 1019 1249 -328 352 216 186 0 chr4 57640148 57640245 -144688102 - L2 LINE L2 0 3272 3158 515 315 195 0 chr4 57640329 57640529 -144687818 + MIR SINE MIR 2 240 -22 883 114 0 0 chr4 57640824 57640947 -144687400 - FRAM SINE Alu -12 164 42 222 288 0 0 chr4 57641208 57641267 -144687080 + L2 LINE L2 3206 3264 -8 309 26 0 0 chr4 57641458 57641484 -144686863 + (TG)n Simple_repeat Simple_repeat 1 64 0 309 26 0 0 chr4 57641484 57641522 -144686825 + (TG)n Simple_repeat Simple_repeat 2 39 0 260 294 76 0 chr4 57641960 57642052 -144686295 + MIR SINE MIR 45 143 -65 1323 177 113 21 chr4 57642098 57642398 -144685949 + MLT1A2 LTR MaLR 1 335 -39 1791 187 22 22 chr4 57642398 57642762 -144685585 + MLT1A1 LTR MaLR 2 365 0 1323 177 113 21 chr4 57642762 57642789 -144685558 + MLT1A2 LTR MaLR 335 358 -16 2812 160 103 140 chr4 57642798 57643180 -144685167 - MER21B LTR ERV1 -2 861 466 195 42 0 0 chr4 57643180 57643204 -144685143 + (CATTT)n Simple_repeat Simple_repeat 2 25 0 2812 160 103 140 chr4 57643204 57643278 -144685069 - MER21B LTR ERV1 -397 466 391 1606 161 0 8 chr4 57643278 57643526 -144684821 - AluJb SINE Alu -66 246 1 2812 160 103 140 chr4 57643526 57643962 -144684385 - MER21B LTR ERV1 -472 391 1 180 111 0 0 chr4 57643996 57644023 -144684324 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 892 298 33 61 chr4 57644023 57644499 -144683848 - L2 LINE L2 -13 3259 2794 2193 100 3 7 chr4 57644571 57644918 -144683429 - AluSq SINE Alu 0 313 1 339 345 18 0 chr4 57645013 57645126 -144683221 + MLT1K LTR MaLR 47 161 -427 472 206 73 67 chr4 57645391 57645556 -144682791 + MER46A DNA MER2_type 2 167 -69 851 249 18 52 chr4 57645556 57645785 -144682562 - MIR SINE MIR -40 222 2 258 273 0 0 chr4 57645827 57645882 -144682465 + L2 LINE L2 3243 3297 -16 1043 80 0 0 chr4 57645888 57646013 -144682334 + AluSg SINE Alu 1 125 -185 2256 76 7 33 chr4 57646208 57646511 -144681836 + AluY SINE Alu 1 295 -16 497 316 15 56 chr4 57646892 57646988 -144681359 - L3 LINE CR1 -239 1338 1240 2201 94 14 0 chr4 57646988 57647275 -144681072 + AluY SINE Alu 3 293 -18 497 316 15 56 chr4 57647275 57647444 -144680903 - L3 LINE CR1 -337 1240 1084 2095 210 126 10 chr4 57647467 57647953 -144680394 + MLT1F LTR MaLR 1 542 0 2187 95 0 14 chr4 57648071 57648365 -144679982 + AluSc SINE Alu 1 290 -19 345 24 0 0 chr4 57648786 57648828 -144679519 + (CA)n Simple_repeat Simple_repeat 2 43 0 1961 153 10 13 chr4 57649022 57649335 -144679012 + AluJb SINE Alu 1 312 0 2042 130 23 0 chr4 57649744 57650043 -144678304 - AluSx SINE Alu -6 306 1 1656 175 24 24 chr4 57650201 57650493 -144677854 + AluJo SINE Alu 1 292 -20 32 0 0 0 chr4 57650493 57650525 -144677822 + AT_rich Low_complexity Low_complexity 1 32 0 724 211 0 0 chr4 57651002 57651130 -144677217 + AluJb SINE Alu 150 277 -35 201 74 0 0 chr4 57651133 57651160 -144677187 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 223 158 26 0 chr4 57651191 57651229 -144677118 + L3 LINE CR1 1527 1565 -12 2357 74 17 0 chr4 57652631 57652930 -144675417 - AluY SINE Alu -7 304 1 2146 122 7 0 chr4 57655475 57655771 -144672576 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr4 57656100 57656122 -144672225 + AT_rich Low_complexity Low_complexity 1 22 0 1826 110 11 4 chr4 57658127 57658390 -144669957 + AluSx SINE Alu 36 300 -12 293 164 66 33 chr4 57659415 57659476 -144668871 - MIR SINE MIR -93 169 107 281 341 45 0 chr4 57660276 57660364 -144667983 + MIR3 SINE MIR 108 199 -9 23 0 0 0 chr4 57660669 57660692 -144667655 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 57660846 57660876 -144667471 + AT_rich Low_complexity Low_complexity 1 30 0 489 213 41 25 chr4 57660969 57661091 -144667256 - FLAM_A SINE Alu -9 124 1 21 36 0 0 chr4 57661258 57661286 -144667061 + AT_rich Low_complexity Low_complexity 1 28 0 252 0 0 0 chr4 57666669 57666697 -144661650 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 21 36 0 0 chr4 57667921 57667949 -144660398 + AT_rich Low_complexity Low_complexity 1 28 0 22 88 0 0 chr4 57668736 57668793 -144659554 + AT_rich Low_complexity Low_complexity 1 57 0 1340 192 97 56 chr4 57668929 57669361 -144658986 + LTR7 LTR ERV1 1 450 0 1175 177 23 12 chr4 57669361 57669766 -144658581 + HERVH LTR ERV1 1 446 -7267 5105 131 30 15 chr4 57669841 57670752 -144657595 + HERVH LTR ERV1 793 1716 -5997 2716 127 2 0 chr4 57670868 57671285 -144657062 + L1PA13 LINE L1 5745 6162 -1 630 181 160 0 chr4 57671285 57671429 -144656918 + MIR SINE MIR 22 188 -74 766 251 26 15 chr4 57671651 57671846 -144656501 - MIR SINE MIR -38 224 28 2101 104 15 70 chr4 57672023 57672351 -144655996 + AluSx SINE Alu 1 310 -2 619 262 100 22 chr4 57673484 57673713 -144654634 - MLT1I LTR MaLR 0 409 163 256 300 38 0 chr4 57673753 57673833 -144654514 - MLT1I LTR MaLR -324 85 3 2161 130 0 0 chr4 57674311 57674603 -144653744 - AluSx SINE Alu -17 295 4 306 0 0 0 chr4 57674630 57674664 -144653683 + (TG)n Simple_repeat Simple_repeat 2 35 0 4228 144 108 25 chr4 57674664 57675505 -144652842 + MER21A LTR ERV1 21 931 0 630 271 85 25 chr4 57675691 57675972 -144652375 - LTR16C LTR ERVL -4 487 190 595 275 59 20 chr4 57676064 57676443 -144651904 + LTR16B LTR ERVL 2 462 -2 1156 189 61 94 chr4 57676517 57676912 -144651435 + MLT2D LTR ERVL 1 479 -41 29 47 0 0 chr4 57676912 57676955 -144651392 + AT_rich Low_complexity Low_complexity 1 43 0 356 250 9 9 chr4 57677017 57677133 -144651214 - ALR/Alpha Satellite centromeric -43 129 14 4861 127 8 8 chr4 57677271 57678096 -144650251 + HERVH LTR ERV1 2004 2828 -4885 4124 142 8 14 chr4 57678094 57679360 -144648987 + HERVH LTR ERV1 3354 4552 -2287 * 1568 165 0 0 chr4 57679350 57679611 -144648736 + HERVH LTR ERV1 5756 6016 -1697 * 3897 102 3 16 chr4 57679601 57680168 -144648179 + HERVH LTR ERV1 7154 7713 0 1570 160 110 59 chr4 57680168 57680594 -144647753 + LTR7 LTR ERV1 1 448 -2 1945 136 24 10 chr4 57680628 57680922 -144647425 + AluJb SINE Alu 1 298 -14 444 333 76 13 chr4 57681015 57681252 -144647095 - MIR SINE MIR -6 256 5 2036 129 7 0 chr4 57681303 57681583 -144646764 + AluSx SINE Alu 13 294 -18 270 237 72 20 chr4 57682088 57682240 -144646107 + L1ME LINE L1 740 899 -5171 21 0 0 0 chr4 57683349 57683370 -144644977 + AT_rich Low_complexity Low_complexity 1 21 0 307 333 93 31 chr4 57683396 57683598 -144644749 + MIR SINE MIR 16 237 -25 195 267 47 58 chr4 57683624 57683710 -144644637 + MIR SINE MIR 152 236 -26 2185 112 3 3 chr4 57683894 57684197 -144644150 + AluSc SINE Alu 1 303 -6 239 121 0 0 chr4 57684920 57684953 -144643394 + MLT2B2 LTR ERVL 483 515 0 312 190 0 0 chr4 57684953 57685032 -144643315 + (TGGA)n Simple_repeat Simple_repeat 3 81 0 205 317 95 53 chr4 57685038 57685300 -144643047 - L2 LINE L2 -181 3091 2819 333 296 174 24 chr4 57685454 57685667 -144642680 + L2 LINE L2 3027 3271 -42 2136 144 0 0 chr4 57685708 57686013 -144642334 + AluSx SINE Alu 1 305 -7 589 250 116 31 chr4 57686020 57686220 -144642127 + MIR SINE MIR 44 262 0 980 230 0 36 chr4 57686555 57686777 -144641570 + AluJo SINE Alu 5 218 -94 2352 123 8 25 chr4 57686777 57687135 -144641212 - THE1B LTR MaLR -4 360 9 1146 103 0 0 chr4 57687582 57687727 -144640620 - AluSq/x SINE Alu -168 145 1 197 379 142 5 chr4 57687727 57687938 -144640409 - L2 LINE L2 -712 2602 2363 244 333 142 16 chr4 57688102 57688285 -144640062 + MIR SINE MIR 17 222 -40 295 268 31 24 chr4 57688662 57688789 -144639558 - L1ME4a LINE L1 -23 6098 5971 459 52 0 0 chr4 57689302 57689360 -144638987 + (CA)n Simple_repeat Simple_repeat 2 59 0 2215 112 7 0 chr4 57689578 57689882 -144638465 + AluSx SINE Alu 1 306 -6 423 0 0 0 chr4 57690699 57690746 -144637601 + (TAAAA)n Simple_repeat Simple_repeat 4 50 0 203 79 26 0 chr4 57690759 57690797 -144637550 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 679 95 0 69 chr4 57691447 57691545 -144636802 + AluSq/x SINE Alu 2 92 -220 1660 105 109 8 chr4 57691545 57691792 -144636555 + AluSx SINE Alu 31 302 -10 679 95 0 69 chr4 57691792 57691809 -144636538 + AluSq/x SINE Alu 92 109 -203 310 318 81 0 chr4 57692054 57692202 -144636145 + MIR SINE MIR 29 188 -74 1037 260 53 78 chr4 57692208 57692730 -144635617 - L2 LINE L2 -3 3310 2779 1969 221 136 50 chr4 57692835 57693576 -144634771 - L2 LINE L2 -1673 1641 837 822 280 107 30 chr4 57693661 57693961 -144634386 - MER46C DNA MER2_type -15 323 1 5441 133 42 5 chr4 57694121 57694953 -144633394 + Tigger4(Zombi) DNA MER2_type 2 864 -1867 2478 139 94 10 chr4 57695460 57695855 -144632492 + MSTA LTR MaLR 1 428 0 234 0 0 0 chr4 57696074 57696100 -144632247 + (T)n Simple_repeat Simple_repeat 1 26 0 470 188 256 45 chr4 57696968 57697101 -144631246 - FRAM SINE Alu -5 161 1 1435 159 148 8 chr4 57697115 57697372 -144630975 - AluJo SINE Alu -8 294 2 21 57 0 0 chr4 57698411 57698446 -144629901 + AT_rich Low_complexity Low_complexity 1 35 0 183 42 0 0 chr4 57698769 57698793 -144629554 + (CA)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr4 57699548 57699571 -144628776 + AT_rich Low_complexity Low_complexity 1 23 0 599 149 0 11 chr4 57699574 57699661 -144628686 - FLAM_C SINE Alu -25 118 33 1920 151 23 0 chr4 57699988 57700293 -144628054 - AluJb SINE Alu 0 312 1 277 281 77 88 chr4 57700335 57700609 -144627738 - L1MC/D LINE L1 -2026 5782 5512 238 281 43 127 chr4 57701285 57702010 -144626337 - L1MC/D LINE L1 -1488 4658 3995 354 330 49 7 chr4 57702173 57702311 -144626036 + MIR3 SINE MIR 35 183 -25 1496 162 17 0 chr4 57702421 57702656 -144625691 + AluJb SINE Alu 1 239 -73 336 190 89 0 chr4 57702661 57702740 -144625607 + AluSg/x SINE Alu 213 298 -4 334 283 108 18 chr4 57702839 57703005 -144625342 - MIR SINE MIR 0 262 82 322 288 54 0 chr4 57703399 57703510 -144624837 + LTR67 LTR ERVL 433 549 -8 421 250 33 17 chr4 57703596 57703716 -144624631 + MIR SINE MIR 31 152 -56 1507 224 87 19 chr4 57705063 57705429 -144622918 - MER82 DNA MER2_type -2 651 261 305 301 149 40 chr4 57705673 57705969 -144622378 + L2 LINE L2 2442 2769 -545 189 216 39 20 chr4 57706322 57706373 -144621974 + L2 LINE L2 3216 3267 -5 1638 175 0 62 chr4 57706779 57707104 -144621243 + AluSx SINE Alu 1 305 -7 227 310 88 9 chr4 57708216 57708329 -144620018 - L2 LINE L2 -1 3312 3191 307 237 40 106 chr4 57708603 57708801 -144619546 - L2 LINE L2 -73 3240 3056 960 248 74 26 chr4 57710784 57711095 -144617252 - L2 LINE L2 -590 2724 2399 198 374 11 11 chr4 57711238 57711329 -144617018 + MIR3 SINE MIR 102 192 -16 416 133 0 17 chr4 57711457 57711517 -144616830 + FRAM SINE Alu 58 116 -60 231 114 0 0 chr4 57711517 57711552 -144616795 + (TA)n Simple_repeat Simple_repeat 2 36 0 1361 157 99 27 chr4 57711984 57712278 -144616069 + MER46B DNA MER2_type 47 236 0 30 0 0 0 chr4 57712292 57712322 -144616025 + AT_rich Low_complexity Low_complexity 1 30 0 1963 147 7 0 chr4 57712322 57712607 -144615740 - AluSx SINE Alu -25 287 1 379 276 19 0 chr4 57712735 57712840 -144615507 - MIR SINE MIR -16 246 140 200 325 48 0 chr4 57713111 57713194 -144615153 + L2 LINE L2 3185 3271 -1 1091 50 14 21 chr4 57713681 57713822 -144614525 + L1PB1 LINE L1 6012 6151 0 296 254 151 8 chr4 57714524 57714650 -144613697 + MIR3 SINE MIR 3 146 -62 381 281 8 33 chr4 57714652 57714773 -144613574 - L2 LINE L2 -2 3270 3153 202 210 309 0 chr4 57714831 57714912 -144613435 - L2 LINE L2 -1 3312 3207 477 210 59 17 chr4 57715001 57715120 -144613227 + MIR SINE MIR 138 261 -1 496 275 21 42 chr4 57715150 57715343 -144613004 + MIR SINE MIR 63 251 -11 222 248 228 10 chr4 57715796 57715897 -144612450 - MIR SINE MIR -20 242 120 250 244 26 26 chr4 57715986 57716064 -144612283 + L2 LINE L2 2956 3033 -239 213 65 0 0 chr4 57718672 57718703 -144609644 + (A)n Simple_repeat Simple_repeat 1 31 0 3816 55 2 7 chr4 57719381 57719834 -144608513 + L1PA5 LINE L1 5704 6154 0 230 329 89 36 chr4 57719938 57720163 -144608184 + L2 LINE L2 3077 3313 0 1844 152 3 3 chr4 57720292 57720607 -144607740 + AluJb SINE Alu 1 315 0 442 335 30 0 chr4 57720786 57720953 -144607394 - MIR SINE MIR -15 247 76 206 294 17 92 chr4 57721146 57721265 -144607082 - L2 LINE L2 -21 3292 3183 1150 168 62 164 chr4 57723072 57723488 -144604859 - MLT1A2 LTR MaLR 0 374 1 187 286 32 48 chr4 57724881 57724944 -144603403 - MIR3 SINE MIR -32 176 115 448 251 11 20 chr4 57725979 57726158 -144602189 - MIR SINE MIR -4 258 30 972 223 5 28 chr4 57726209 57726420 -144601927 - MER3 DNA MER1_type -3 206 1 186 103 0 0 chr4 57726683 57726712 -144601635 + (CA)n Simple_repeat Simple_repeat 2 30 0 25 0 0 0 chr4 57727525 57727550 -144600797 + AT_rich Low_complexity Low_complexity 1 25 0 2123 115 3 37 chr4 57727559 57727881 -144600466 + AluSx SINE Alu 1 311 -1 297 0 0 0 chr4 57727888 57727921 -144600426 + (CA)n Simple_repeat Simple_repeat 2 34 0 2314 91 0 0 chr4 57729326 57729624 -144598723 + AluSx SINE Alu 1 298 -14 997 197 16 0 chr4 57730115 57730303 -144598044 + MER82 DNA MER2_type 1 191 -462 1561 114 31 9 chr4 57730303 57730530 -144597817 - AluSc SINE Alu -16 293 62 694 226 53 53 chr4 57730749 57730975 -144597372 + Charlie4 DNA MER1_type 4 229 -1732 578 120 106 70 chr4 57730968 57731202 -144597145 + Charlie4 DNA MER1_type 1737 1961 0 * 1501 52 5 10 chr4 57731207 57731401 -144596946 + L1PA7 LINE L1 5962 6154 0 643 162 45 0 chr4 57732406 57732517 -144595830 + AluJo/FLAM SINE Alu 1 116 -196 2412 89 0 0 chr4 57732517 57732821 -144595526 + AluY SINE Alu 1 304 -7 28429 29 2 0 chr4 57732825 57737189 -144591158 + L1PA4 LINE L1 1782 6154 -1 68 48 0 0 chr4 57737202 57737305 -144591042 + AT_rich Low_complexity Low_complexity 1 103 0 2217 122 0 3 chr4 57737364 57737667 -144590680 - AluSq SINE Alu -11 302 1 280 270 122 0 chr4 57737713 57737828 -144590519 - L1ME4a LINE L1 -2 6119 5991 336 311 90 0 chr4 57737868 57738054 -144590293 - MIR SINE MIR -2 260 51 23 0 0 0 chr4 57738121 57738144 -144590203 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 57738299 57738324 -144590023 + AT_rich Low_complexity Low_complexity 1 25 0 205 325 0 39 chr4 57739107 57739184 -144589163 + GA-rich Low_complexity Low_complexity 2 75 0 1190 90 104 14 chr4 57739924 57740135 -144588212 + MER7A DNA MER2_type 1 228 -118 1878 132 16 19 chr4 57740295 57740606 -144587741 + AluSx SINE Alu 3 312 0 3449 136 51 120 chr4 57740636 57741843 -144586504 + L1MA9 LINE L1 5004 6293 0 2028 128 38 3 chr4 57741843 57742131 -144586216 + AluSx SINE Alu 1 298 -14 3449 136 51 120 chr4 57742131 57742302 -144586045 + L1MA9 LINE L1 6293 6233 -60 342 0 0 0 chr4 57742302 57742340 -144586007 + (TA)n Simple_repeat Simple_repeat 1 38 0 3449 136 51 120 chr4 57742340 57742396 -144585951 + L1MA9 LINE L1 6232 6290 -3 437 273 64 86 chr4 57742444 57742510 -144585837 + MIR SINE MIR 47 113 -149 886 159 0 0 chr4 57742510 57742642 -144585705 - FLAM_A SINE Alu -1 132 1 437 273 64 86 chr4 57742642 57742795 -144585552 + MIR SINE MIR 113 261 -1 820 150 0 0 chr4 57743066 57743215 -144585132 - FLAM_C SINE Alu 0 149 1 189 250 42 0 chr4 57744263 57744311 -144584036 + L2 LINE L2 2176 2225 -1089 251 217 0 17 chr4 57744333 57744393 -144583954 + CT-rich Low_complexity Low_complexity 4 62 0 10211 120 37 53 chr4 57744581 57744738 -144583609 + Tigger4(Zombi) DNA MER2_type 762 920 -1811 1527 169 19 47 chr4 57744738 57745057 -144583290 + AluJo SINE Alu 1 310 -2 10211 120 37 53 chr4 57745057 57745939 -144582408 + Tigger4(Zombi) DNA MER2_type 920 1815 -916 2002 121 0 3 chr4 57745939 57746248 -144582099 - AluSg SINE Alu 0 308 1 1828 112 58 22 chr4 57746258 57746535 -144581812 - AluSx SINE Alu -25 287 1 10211 120 37 53 chr4 57746535 57746546 -144581801 + Tigger4(Zombi) DNA MER2_type 1824 1834 -897 1858 168 0 0 chr4 57746546 57746843 -144581504 - AluJb SINE Alu -15 297 1 10211 120 37 53 chr4 57746843 57747748 -144580599 + Tigger4(Zombi) DNA MER2_type 1834 2699 -32 412 287 71 32 chr4 57747921 57748087 -144580260 + MIR SINE MIR 39 208 -54 1533 207 138 18 chr4 57748087 57748595 -144579752 - MER90 LTR ERV1 -4 571 3 412 287 71 32 chr4 57748595 57748641 -144579706 + MIR SINE MIR 208 251 -11 356 269 126 29 chr4 57748952 57749127 -144579220 + L2 LINE L2 3121 3312 -1 273 317 50 0 chr4 57749164 57749265 -144579082 - MIR SINE MIR -6 256 151 712 291 83 38 chr4 57749367 57749680 -144578667 + L2 LINE L2 1028 1354 -1960 1309 266 161 29 chr4 57749682 57750444 -144577903 + L2 LINE L2 1640 2502 -812 492 348 152 26 chr4 57750575 57750995 -144577352 + L2 LINE L2 2804 3276 -37 391 312 157 34 chr4 57751175 57751588 -144576759 + L2 LINE L2 729 1192 -2122 208 331 60 53 chr4 57751931 57752215 -144576132 + L2 LINE L2 1609 1894 -1420 26 0 0 0 chr4 57752929 57752955 -144575392 + AT_rich Low_complexity Low_complexity 1 26 0 272 271 128 32 chr4 57752984 57753265 -144575082 + L1ME LINE L1 5525 5832 -289 293 234 8 97 chr4 57753436 57753506 -144574841 + L1ME LINE L1 5548 5604 -517 2268 101 7 3 chr4 57753506 57753812 -144574535 + AluSq SINE Alu 1 307 -6 293 234 8 97 chr4 57753812 57753865 -144574482 + L1ME LINE L1 5604 5660 -461 2034 120 20 0 chr4 57754120 57754412 -144573935 - AluSx SINE Alu -13 299 2 24 67 0 0 chr4 57754831 57754876 -144573471 + AT_rich Low_complexity Low_complexity 1 45 0 526 285 88 60 chr4 57755126 57755445 -144572902 - L2 LINE L2 -352 2962 2635 677 178 0 25 chr4 57755471 57755589 -144572758 - FLAM_A SINE Alu -18 124 10 541 305 35 10 chr4 57755676 57755876 -144572471 - L2 LINE L2 -780 2534 2330 557 341 147 34 chr4 57757992 57758399 -144569948 + L2 LINE L2 2812 3264 -8 318 307 147 25 chr4 57758943 57759106 -144569241 - MIR SINE MIR -74 188 6 477 50 0 0 chr4 57759213 57759273 -144569074 + (CA)n Simple_repeat Simple_repeat 1 60 0 25 0 0 0 chr4 57759505 57759530 -144568817 + AT_rich Low_complexity Low_complexity 1 25 0 1314 213 6 69 chr4 57759921 57760254 -144568093 + AluJb SINE Alu 1 312 0 217 345 124 0 chr4 57760570 57760683 -144567664 - L2 LINE L2 -1 3312 3186 338 275 67 0 chr4 57762775 57762895 -144565452 - MIR SINE MIR 0 262 135 458 234 57 51 chr4 57763075 57763119 -144565228 - MER5B DNA MER1_type -1 177 135 270 0 0 0 chr4 57763119 57763149 -144565198 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 458 234 57 51 chr4 57763149 57763279 -144565068 - MER5B DNA MER1_type -43 135 2 180 0 0 0 chr4 57764364 57764384 -144563963 + (TTG)n Simple_repeat Simple_repeat 3 22 0 291 167 0 0 chr4 57765463 57765529 -144562818 + (CGGG)n Simple_repeat Simple_repeat 1 66 0 25 31 0 0 chr4 57765592 57765624 -144562723 + GC_rich Low_complexity Low_complexity 1 32 0 264 267 0 0 chr4 57766229 57766289 -144562058 + GA-rich Low_complexity Low_complexity 1 60 0 1423 178 0 17 chr4 57767681 57767911 -144560436 + AluJo SINE Alu 24 249 -63 311 247 12 12 chr4 57769372 57769457 -144558890 - MIR SINE MIR -49 213 129 557 167 0 0 chr4 57819567 57819663 -144508684 + FRAM SINE Alu 68 163 -13 2109 144 24 13 chr4 57819668 57820044 -144508303 + MER41B LTR ERV1 162 541 -94 280 192 0 110 chr4 57820041 57820114 -144508233 + MER66B LTR ERV1 410 474 -12 * 202 152 0 0 chr4 57820464 57820497 -144507850 + T-rich Low_complexity Low_complexity 1 33 0 397 236 125 19 chr4 57820675 57820883 -144507464 + LTR54B LTR ERV1 267 496 -2 846 220 62 5 chr4 57820884 57821093 -144507254 + L1MC4 LINE L1 7386 7606 -436 1403 115 16 36 chr4 57821225 57821477 -144506870 - SVA Other Other -708 678 432 225 325 0 12 chr4 57821481 57821561 -144506786 + L1MC4 LINE L1 7592 7670 -372 333 272 89 42 chr4 57821735 57821926 -144506421 + L1MCa LINE L1 2221 2420 -4006 1689 161 35 0 chr4 57822385 57822640 -144505707 - AluJb SINE Alu -16 296 33 1216 159 159 4 chr4 57822657 57822934 -144505413 + MER46B DNA MER2_type 2 196 -40 1387 161 7 36 chr4 57823557 57823862 -144504485 - pTR5 LTR ERV1 -1401 1037 742 2401 172 17 0 chr4 57823996 57824415 -144503932 - MSTB LTR MaLR 0 426 1 267 284 15 15 chr4 57824943 57825010 -144503337 + MLT1K LTR MaLR 182 248 -340 1301 163 10 5 chr4 57825020 57825229 -144503118 + AluJb SINE Alu 1 210 -102 2432 43 0 4 chr4 57825582 57825859 -144502488 - AluSx SINE Alu -36 276 1 2044 134 10 3 chr4 57828794 57829085 -144499262 + AluSx SINE Alu 3 295 -17 1126 105 47 0 chr4 57829087 57829278 -144499069 + L1MC2 LINE L1 6140 6339 -5 183 228 316 0 chr4 57829354 57829433 -144498914 + L2 LINE L2 3161 3264 -8 1692 184 14 3 chr4 57829472 57829766 -144498581 + AluJb SINE Alu 1 297 -15 679 262 48 77 chr4 57829834 57829989 -144498358 - MIR SINE MIR -2 260 113 2081 131 13 3 chr4 57829989 57830111 -144498236 + AluSx SINE Alu 1 120 -192 180 0 0 0 chr4 57830111 57830131 -144498216 + (CA)n Simple_repeat Simple_repeat 2 21 0 2081 131 13 3 chr4 57830131 57830306 -144498041 + AluSx SINE Alu 120 301 -11 679 262 48 77 chr4 57830306 57830398 -144497949 - MIR SINE MIR -149 113 20 1888 179 16 27 chr4 57830744 57831113 -144497234 - MLT1A1 LTR MaLR 0 365 1 362 290 65 0 chr4 57831440 57831547 -144496800 + MIR SINE MIR 35 148 -60 2159 104 7 0 chr4 57831566 57831844 -144496503 - AluSx SINE Alu -32 280 1 398 200 0 0 chr4 57832158 57832228 -144496119 + AluS SINE Alu 228 297 -5 21 0 0 0 chr4 57832228 57832249 -144496098 + AT_rich Low_complexity Low_complexity 1 21 0 379 331 186 13 chr4 57832327 57832708 -144495639 - L2 LINE L2 -660 2654 2208 575 231 8 17 chr4 57832710 57832827 -144495520 + FLAM_A SINE Alu 1 116 -17 198 0 0 0 chr4 57832827 57832849 -144495498 + (T)n Simple_repeat Simple_repeat 1 22 0 2421 97 0 3 chr4 57832860 57833168 -144495179 + AluSq SINE Alu 3 309 -4 2200 93 16 32 chr4 57833172 57833484 -144494863 + AluSq SINE Alu 7 313 0 2218 92 16 7 chr4 57833733 57834037 -144494310 + AluSp SINE Alu 1 307 -6 2402 75 0 32 chr4 57834243 57834551 -144493796 + AluSg SINE Alu 6 303 -7 522 294 100 39 chr4 57834712 57834943 -144493404 - MLT1K LTR MaLR -15 573 329 2132 125 0 7 chr4 57834978 57835283 -144493064 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr4 57835619 57835640 -144492707 + GC_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 57836193 57836221 -144492126 + AT_rich Low_complexity Low_complexity 1 28 0 1194 127 0 6 chr4 57838213 57838379 -144489968 + AluSg SINE Alu 2 166 -144 2123 124 0 7 chr4 57839330 57839629 -144488718 - AluSx SINE Alu -2 310 14 1184 96 12 18 chr4 57839781 57839948 -144488399 - AluSg/x SINE Alu -18 294 129 277 304 0 0 chr4 57840263 57840332 -144488015 + MER102b DNA MER1_type 249 317 -24 495 274 73 27 chr4 57840625 57841012 -144487335 + L1MCc LINE L1 1317 1934 -4923 1582 229 19 36 chr4 57841043 57841405 -144486942 - MSTD LTR MaLR -2 394 39 263 311 68 7 chr4 57841598 57841746 -144486601 - L2 LINE L2 -805 2509 2353 1985 161 3 0 chr4 57843010 57843315 -144485032 + AluJo SINE Alu 1 306 -6 2040 147 3 13 chr4 57843540 57843852 -144484495 - AluSx SINE Alu -3 309 1 196 207 121 17 chr4 57845769 57845827 -144482520 - MIR SINE MIR -79 183 120 226 244 26 26 chr4 57845916 57845994 -144482353 + L2 LINE L2 2956 3033 -239 273 253 143 22 chr4 57846359 57846450 -144481897 + MER5B DNA MER1_type 74 175 -3 252 143 36 36 chr4 57846836 57846892 -144481455 + L2 LINE L2 3246 3301 -12 10767 138 15 12 chr4 57849425 57849693 -144478654 - L1MA2 LINE L1 -4 6300 6034 1915 156 10 0 chr4 57849693 57849988 -144478359 + AluSx SINE Alu 1 298 -14 10767 138 15 12 chr4 57849988 57852609 -144475738 - L1MA2 LINE L1 -270 6034 3401 1672 178 33 6 chr4 57852709 57853040 -144475307 + L1 LINE L1 4952 5291 -855 1027 158 11 21 chr4 57853448 57853638 -144474709 + AluSp SINE Alu 96 283 -30 4416 138 7 0 chr4 57853638 57854317 -144474030 + L1PA16 LINE L1 5477 6160 -6 675 340 32 40 chr4 57854894 57855297 -144473050 - MLT1K LTR MaLR -168 420 21 21 0 0 0 chr4 57855778 57855799 -144472548 + AT_rich Low_complexity Low_complexity 1 21 0 24 77 0 0 chr4 57856072 57856124 -144472223 + AT_rich Low_complexity Low_complexity 1 52 0 1446 237 35 48 chr4 57856569 57856666 -144471681 + MLT1H LTR MaLR 8 105 -444 2083 104 4 7 chr4 57856666 57856946 -144471401 + AluSq SINE Alu 1 279 -34 1446 237 35 48 chr4 57856946 57857224 -144471123 + MLT1H LTR MaLR 105 378 -171 2234 109 0 13 chr4 57857792 57858104 -144470243 + AluSg SINE Alu 3 310 0 4261 127 244 114 chr4 57858338 57859572 -144468775 + pTR5 LTR ERV1 1045 2438 0 1444 164 230 65 chr4 57859619 57860063 -144468284 - MLT2B1 LTR ERVL -3 517 1 214 376 16 21 chr4 57860138 57860332 -144468015 + L2 LINE L2 2823 3015 -257 945 169 6 12 chr4 57860342 57860502 -144467845 + FRAM SINE Alu 1 153 -23 654 217 76 13 chr4 57860614 57860771 -144467576 - MLT1C LTR MaLR -43 424 258 692 236 313 12 chr4 57861062 57861507 -144466840 + L2 LINE L2 2733 3308 -5 2065 136 0 0 chr4 57861666 57861945 -144466402 + AluSx SINE Alu 13 291 -21 345 308 82 0 chr4 57862692 57862851 -144465496 - MIR SINE MIR -31 231 60 637 161 48 8 chr4 57862943 57863067 -144465280 - L1MB5 LINE L1 -8 6166 6038 1425 197 19 4 chr4 57863197 57863456 -144464891 + AluJb SINE Alu 33 295 -17 4265 150 29 71 chr4 57863863 57865277 -144463070 + pTR5 LTR ERV1 741 2606 0 2163 126 0 3 chr4 57865460 57865769 -144462578 - AluSq SINE Alu -5 308 1 318 260 14 0 chr4 57865783 57865856 -144462491 - U3 snRNA snRNA 0 217 144 600 214 0 0 chr4 57865856 57865954 -144462393 + AluSp SINE Alu 2 99 -213 390 94 47 0 chr4 57865975 57866039 -144462308 - MER41B LTR ERV1 -87 548 482 399 77 19 0 chr4 57866040 57866092 -144462255 + AluSp SINE Alu 104 156 -147 1934 149 7 3 chr4 57866739 57867047 -144461300 - AluSx SINE Alu -1 311 3 1483 157 0 46 chr4 57867055 57867379 -144460968 - AluSc SINE Alu 0 309 1 510 227 15 30 chr4 57868572 57868704 -144459643 + AluJo SINE Alu 5 134 -178 286 268 126 8 chr4 57868830 57868957 -144459390 + L2 LINE L2 3166 3307 -6 2366 106 0 0 chr4 57869013 57869315 -144459032 - AluSx SINE Alu -10 302 1 1701 167 0 0 chr4 57869664 57869922 -144458425 - AluSx SINE Alu -54 258 1 245 93 53 120 chr4 57870404 57870479 -144457868 - MLT1J LTR MaLR -2 509 440 767 179 76 0 chr4 57870518 57870663 -144457684 + AluJb SINE Alu 147 302 -10 2430 74 0 10 chr4 57870663 57870961 -144457386 + AluSp SINE Alu 1 295 -18 744 299 63 51 chr4 57871457 57871888 -144456459 - MLT1J LTR MaLR -57 454 19 1460 155 7 86 chr4 57872268 57872558 -144455789 - AluJb SINE Alu -28 284 18 345 189 81 0 chr4 57872573 57872647 -144455700 + L1M4 LINE L1 5182 5261 -885 2248 120 0 0 chr4 57872655 57872955 -144455392 + AluSx SINE Alu 13 312 0 265 115 96 0 chr4 57873060 57873112 -144455235 - MIR SINE MIR -67 141 85 1711 142 86 0 chr4 57873500 57873767 -144454580 + AluSx SINE Alu 1 290 -22 382 255 75 0 chr4 57873808 57873914 -144454433 + MER81 DNA DNA 1 114 0 1045 162 0 0 chr4 57874142 57874296 -144454051 + AluSx SINE Alu 11 164 -148 252 192 77 77 chr4 57874296 57874452 -144453895 + (GTATG)n Simple_repeat Simple_repeat 1 156 0 841 186 50 0 chr4 57874452 57874631 -144453716 + AluSg/x SINE Alu 137 322 0 2177 126 0 10 chr4 57874631 57874941 -144453406 + AluSg SINE Alu 2 308 -2 224 380 16 16 chr4 57875035 57875164 -144453183 + MIR SINE MIR 34 162 -100 1820 155 17 10 chr4 57875409 57875700 -144452647 + AluJo SINE Alu 5 297 -15 21 0 0 0 chr4 57875700 57875721 -144452626 + AT_rich Low_complexity Low_complexity 1 21 0 2185 113 0 7 chr4 57875721 57876021 -144452326 + AluSx SINE Alu 2 299 -13 2323 105 0 3 chr4 57876029 57876335 -144452012 + AluSg SINE Alu 1 305 -5 1490 157 45 19 chr4 57876910 57877178 -144451169 + AluJo SINE Alu 13 287 -25 1921 154 0 3 chr4 57877298 57877583 -144450764 - AluSg SINE Alu -26 284 1 371 104 0 0 chr4 57877585 57877633 -144450714 - MSTD LTR MaLR -345 51 4 408 306 82 14 chr4 57877634 57878080 -144450267 + L1MEd LINE L1 1196 1625 -4590 288 272 130 12 chr4 57878134 57878296 -144450051 + L1MEd LINE L1 1831 2011 -4385 752 179 0 0 chr4 57878396 57878513 -144449834 + AluJb SINE Alu 2 118 -194 216 158 0 0 chr4 57878513 57878551 -144449796 + (CATA)n Simple_repeat Simple_repeat 2 39 0 2592 55 0 10 chr4 57878623 57878935 -144449412 - AluY SINE Alu -2 309 1 406 324 74 23 chr4 57879105 57879414 -144448933 - L1M4 LINE L1 -1086 5060 4736 2218 89 14 3 chr4 57879442 57879733 -144448614 + AluSp SINE Alu 1 294 -19 606 209 74 7 chr4 57879752 57879900 -144448447 - U3 snRNA snRNA -59 158 1 2206 105 10 3 chr4 57880410 57880706 -144447641 + AluSx SINE Alu 1 298 -14 2139 147 0 0 chr4 57880903 57881215 -144447132 + AluSx SINE Alu 1 312 0 194 356 11 0 chr4 57882079 57882166 -144446181 - L3 LINE CR1 -360 1217 1130 248 267 14 21 chr4 57882302 57882412 -144445935 - MIR SINE MIR -46 162 56 910 109 0 0 chr4 57882416 57882535 -144445812 + AluSq/x SINE Alu 1 119 -194 1371 155 15 0 chr4 57883159 57883365 -144444982 - AluSg/x SINE Alu -31 281 73 257 86 0 0 chr4 57883366 57883401 -144444946 - Alu SINE Alu -265 35 1 208 250 0 0 chr4 57883832 57883872 -144444475 + (TATG)n Simple_repeat Simple_repeat 4 43 0 194 58 96 19 chr4 57884016 57884068 -144444279 + T-rich Low_complexity Low_complexity 1 56 0 4799 27 0 0 chr4 57884068 57884616 -144443731 - L1PA3 LINE L1 -3 6152 5605 642 240 142 44 chr4 57885236 57885553 -144442794 - MER7A DNA MER2_type 0 346 1 238 154 0 0 chr4 57885633 57885672 -144442675 + MLT1J LTR MaLR 99 137 -374 781 177 24 0 chr4 57885744 57885868 -144442479 + AluJ SINE Alu 1 127 -175 631 158 16 0 chr4 57885869 57885996 -144442351 + GA-rich Low_complexity Low_complexity 2 130 0 1706 195 34 14 chr4 57886469 57886823 -144441524 - MLT1A1 LTR MaLR -2 363 3 2679 168 12 35 chr4 57886899 57886992 -144441355 + L1MA4 LINE L1 4130 4224 -1922 1938 148 16 13 chr4 57886992 57887303 -144441044 - AluJb SINE Alu 0 312 1 2679 168 12 35 chr4 57887303 57887787 -144440560 + L1MA4 LINE L1 4224 4694 -1452 756 237 0 6 chr4 57887787 57887956 -144440391 + AluJ SINE Alu 119 286 -26 3782 144 17 35 chr4 57887970 57889230 -144439117 + L1MA4 LINE L1 4696 5930 -370 2079 144 3 10 chr4 57889860 57890172 -144438175 - AluSx SINE Alu -2 310 1 1141 91 154 4 chr4 57890172 57890385 -144437962 - LTR54 LTR ERV1 -218 280 5 553 212 0 0 chr4 57890451 57890550 -144437797 - FRAM SINE Alu -19 157 59 1922 234 100 79 chr4 57890550 57891231 -144437116 - L1MC4 LINE L1 -673 7135 6441 479 246 0 56 chr4 57891493 57891672 -144436675 + GA-rich Low_complexity Low_complexity 5 173 0 2282 115 0 7 chr4 57891736 57892040 -144436307 + AluSx SINE Alu 1 302 -10 1564 161 51 18 chr4 57892048 57892321 -144436026 + AluJb SINE Alu 3 284 -28 824 230 86 30 chr4 57892457 57892761 -144435586 - MER5C DNA MER1_type -3 321 1 2353 105 0 0 chr4 57892816 57893121 -144435226 + AluSg SINE Alu 1 305 -5 2158 120 7 0 chr4 57894902 57895201 -144433146 - AluSq SINE Alu -10 303 3 640 105 89 24 chr4 57895290 57895414 -144432933 - L1MA8 LINE L1 -4 6287 6156 1410 137 0 5 chr4 57895553 57895758 -144432589 - AluSc SINE Alu 0 309 106 22 0 0 0 chr4 57895918 57895940 -144432407 + AT_rich Low_complexity Low_complexity 1 22 0 624 270 102 66 chr4 57895958 57896149 -144432198 + L1MC4a LINE L1 5298 5481 -2327 1870 185 0 3 chr4 57896149 57896447 -144431900 + AluJb SINE Alu 1 297 -15 624 270 102 66 chr4 57896447 57896832 -144431515 + L1MC4a LINE L1 5481 5895 -1913 224 316 23 53 chr4 57897132 57897265 -144431082 - MER5B DNA MER1_type -49 129 1 3538 137 8 0 chr4 57897410 57897937 -144430410 + LTR26B LTR ERV1 1 531 0 18014 151 85 15 chr4 57897967 57899974 -144428373 + L1M1 LINE L1 12 1877 -5688 1829 148 79 0 chr4 57899974 57900252 -144428095 - AluSx SINE Alu -12 300 1 18014 151 85 15 chr4 57900252 57901005 -144427342 + L1M1 LINE L1 1877 2576 -4989 2003 145 10 0 chr4 57901005 57901301 -144427046 + AluSx SINE Alu 1 299 -13 18014 151 85 15 chr4 57901301 57901702 -144426645 + L1M1 LINE L1 2576 3396 -4169 1876 160 3 7 chr4 57901706 57902012 -144426335 + AluSx SINE Alu 3 307 -5 3210 208 39 19 chr4 57902062 57902813 -144425534 + L1M1 LINE L1 3799 4564 -3001 1521 150 49 4 chr4 57902816 57903082 -144425265 + AluSx SINE Alu 5 282 -30 195 200 40 20 chr4 57903380 57903430 -144424917 + L2 LINE L2 3136 3186 -86 1595 133 0 0 chr4 57903432 57903657 -144424690 - AluSx SINE Alu -5 307 83 1959 182 17 28 chr4 57903658 57904016 -144424331 - MLT1A1 LTR MaLR -11 354 1 541 151 12 0 chr4 57904059 57904145 -144424202 - AluSx SINE Alu -224 88 2 297 109 0 0 chr4 57904217 57904263 -144424084 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 24 0 0 0 chr4 57904470 57904494 -144423853 + AT_rich Low_complexity Low_complexity 1 24 0 240 346 0 0 chr4 57904834 57904915 -144423432 + MIR SINE MIR 177 257 -5 399 249 315 10 chr4 57905250 57905447 -144422900 - MIR SINE MIR 0 262 6 757 215 13 13 chr4 57905824 57905982 -144422365 + FRAM SINE Alu 1 158 -8 1795 157 0 11 chr4 57906708 57906989 -144421358 + AluSx SINE Alu 1 278 -34 207 0 0 0 chr4 57906993 57907016 -144421331 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1726 150 10 48 chr4 57907272 57907629 -144420718 + AluJo SINE Alu 1 346 0 441 317 126 39 chr4 57907672 57908231 -144420116 - L2 LINE L2 0 3272 2687 2694 232 37 38 chr4 57908231 57908745 -144419602 + L1ME3A LINE L1 5455 5969 -201 3225 76 0 2 chr4 57908745 57909155 -144419192 + L1PA7 LINE L1 5736 6144 -10 2694 232 37 38 chr4 57909155 57909346 -144419001 + L1ME3A LINE L1 5969 6159 -11 2229 122 0 0 chr4 57909386 57909680 -144418667 - AluSq SINE Alu -19 294 1 250 235 0 29 chr4 57909921 57909989 -144418358 - AluJ/FLAM SINE Alu -236 66 1 437 217 0 9 chr4 57910113 57910228 -144418119 + CT-rich Low_complexity Low_complexity 1 114 0 800 157 8 0 chr4 57910228 57910349 -144417998 - FRAM SINE Alu -20 156 35 2246 87 43 0 chr4 57910603 57910903 -144417444 - AluSp SINE Alu 0 313 1 2113 125 7 0 chr4 57911267 57911555 -144416792 - AluSg SINE Alu -20 290 1 1382 175 0 32 chr4 57911561 57911813 -144416534 - AluJo SINE Alu -23 289 46 813 181 0 0 chr4 57912318 57912445 -144415902 - FLAM_C SINE Alu -16 127 1 210 330 0 0 chr4 57917401 57917489 -144410858 + G-rich Low_complexity Low_complexity 1 88 0 373 267 52 7 chr4 57920528 57920663 -144407684 + MIR SINE MIR 1 141 -121 3204 153 10 61 chr4 57921145 57921323 -144407024 + MER41B LTR ERV1 3 189 -289 1328 179 21 45 chr4 57921323 57921640 -144406707 + AluJb SINE Alu 1 310 0 3204 153 10 61 chr4 57921640 57922111 -144406236 + MER41B LTR ERV1 189 455 -23 21 0 0 0 chr4 57922462 57922483 -144405864 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr4 57922483 57922505 -144405842 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1929 151 0 7 chr4 57922508 57922792 -144405555 - AluJb SINE Alu -30 282 1 1764 143 151 32 chr4 57922847 57923415 -144404932 + MER41-int LTR ERV1 693 1428 -5248 1556 185 61 33 chr4 57923416 57924154 -144404193 + MER41-int LTR ERV1 1220 1936 -4740 2022 125 3 14 chr4 57924154 57924492 -144403855 - AluSq SINE Alu 0 335 1 1556 185 61 33 chr4 57924492 57924655 -144403692 + MER41-int LTR ERV1 1936 4194 -2482 * 2448 219 15 19 chr4 57924654 57925192 -144403155 + MER41-int LTR ERV1 1674 2209 -2671 2326 171 23 86 chr4 57925204 57925858 -144402489 + MER41-int LTR ERV1 565 2495 -3451 2060 143 14 11 chr4 57925851 57926214 -144402133 + MER41-int LTR ERV1 3167 3530 -2416 * 45067 38 2 14 chr4 57926220 57932440 -144395907 + L1PA3 LINE L1 7 6155 0 7945 159 29 33 chr4 57932456 57933423 -144394924 + MER41-int LTR ERV1 3057 4027 -1919 2336 111 0 9 chr4 57933423 57933738 -144394609 + AluSq SINE Alu 1 312 -1 7945 159 29 33 chr4 57933738 57935094 -144393253 + MER41-int LTR ERV1 4027 5781 -165 2191 134 0 0 chr4 57936320 57936625 -144391722 - AluSx SINE Alu -7 305 1 348 279 52 15 chr4 57937675 57937811 -144390536 + MIR SINE MIR 1 141 -121 2569 60 0 0 chr4 57938145 57938443 -144389904 - AluY SINE Alu -9 302 5 207 0 0 0 chr4 57938463 57938486 -144389861 + (CAA)n Simple_repeat Simple_repeat 2 24 0 207 245 0 0 chr4 57939074 57939127 -144389220 + (CCA)n Simple_repeat Simple_repeat 1 53 0 291 122 0 0 chr4 57939135 57939184 -144389163 + (CGG)n Simple_repeat Simple_repeat 1 49 0 38 0 0 0 chr4 57940799 57940837 -144387510 + AT_rich Low_complexity Low_complexity 1 38 0 396 0 0 0 chr4 57941962 57942006 -144386341 + (CA)n Simple_repeat Simple_repeat 1 44 0 261 0 0 0 chr4 57942806 57942835 -144385512 + (A)n Simple_repeat Simple_repeat 1 29 0 213 210 32 16 chr4 57943339 57943401 -144384946 + GA-rich Low_complexity Low_complexity 1 63 0 22 35 0 0 chr4 57944668 57944697 -144383650 + AT_rich Low_complexity Low_complexity 1 29 0 183 100 0 0 chr4 57945028 57945058 -144383289 + (A)n Simple_repeat Simple_repeat 1 30 0 447 84 24 12 chr4 57945732 57945815 -144382532 + (GA)n Simple_repeat Simple_repeat 1 84 0 225 0 0 0 chr4 57946371 57946396 -144381951 + (T)n Simple_repeat Simple_repeat 1 25 0 246 174 0 0 chr4 57946737 57946783 -144381564 + T-rich Low_complexity Low_complexity 4 49 0 546 278 106 72 chr4 57948529 57948971 -144379376 + LTR33 LTR ERVL 3 459 -62 406 285 68 36 chr4 57949039 57949260 -144379087 - L3 LINE CR1 -73 1504 1277 347 283 51 58 chr4 57949240 57949378 -144378969 + L2 LINE L2 3136 3272 0 * 452 236 35 35 chr4 57949574 57949718 -144378629 + MIR SINE MIR 64 207 -55 475 320 13 7 chr4 57949729 57949882 -144378465 - L2 LINE L2 -245 3068 2915 341 202 123 26 chr4 57949882 57949996 -144378351 + L1MEc LINE L1 1786 1910 -4486 821 152 0 62 chr4 57950011 57950156 -144378191 - FLAM_C SINE Alu -4 139 4 1529 196 85 3 chr4 57950159 57950465 -144377882 + MER82 DNA MER2_type 1 331 -322 1344 146 19 27 chr4 57950492 57950752 -144377595 - L1MB3 LINE L1 -1 6182 5925 1289 253 38 33 chr4 57950752 57951148 -144377199 - LTR47B LTR ERVL 0 443 46 2542 181 21 59 chr4 57951150 57951649 -144376698 - L1MB1 LINE L1 -220 5942 5426 1805 148 9 50 chr4 57951649 57951966 -144376381 - AluJb SINE Alu -8 304 1 2542 181 21 59 chr4 57951966 57952316 -144376031 - L1MB1 LINE L1 -736 5426 5052 1899 152 7 3 chr4 57952316 57952605 -144375742 - AluJb SINE Alu -20 292 3 2542 181 21 59 chr4 57952605 57952674 -144375673 - L1MB1 LINE L1 -1110 5052 4982 21 36 0 0 chr4 57952674 57952702 -144375645 + AT_rich Low_complexity Low_complexity 1 28 0 263 191 3 80 chr4 57952728 57952812 -144375535 - MLT1C LTR MaLR -310 80 1 4775 170 15 66 chr4 57953129 57953175 -144375172 - L1MB2 LINE L1 -7 6164 6117 2194 119 0 0 chr4 57953175 57953470 -144374877 - AluSx SINE Alu -17 295 1 4775 170 15 66 chr4 57953470 57954292 -144374055 - L1MB2 LINE L1 -54 6117 5255 2439 111 11 22 chr4 57954292 57954625 -144373722 - L1PA15 LINE L1 -6 6159 5829 1977 119 42 0 chr4 57954625 57954910 -144373437 - AluSg SINE Alu -12 298 2 2439 111 11 22 chr4 57954910 57954947 -144373400 - L1PA15 LINE L1 -336 5829 5793 4775 170 15 66 chr4 57954947 57955337 -144373010 - L1MB2 LINE L1 -916 5255 4847 2719 26 0 7 chr4 57955337 57955645 -144372702 - AluY SINE Alu -5 306 1 4775 170 15 66 chr4 57955645 57955720 -144372627 - L1MB2 LINE L1 -1324 4847 4770 2450 87 7 0 chr4 57955720 57956030 -144372317 - AluSx SINE Alu 0 312 1 4775 170 15 66 chr4 57956030 57956507 -144371840 - L1MB2 LINE L1 -1401 4770 4441 1185 240 27 10 chr4 57956510 57956802 -144371545 + MER82 DNA MER2_type 351 647 -6 398 213 18 148 chr4 57956815 57956924 -144371423 + L1MEc LINE L1 1914 1995 -4401 2269 108 3 7 chr4 57956924 57957229 -144371118 + AluSx SINE Alu 1 304 -8 398 213 18 148 chr4 57957229 57957288 -144371059 + L1MEc LINE L1 1995 2060 -4336 867 218 0 6 chr4 57957288 57957458 -144370889 + FRAM SINE Alu 1 169 -7 194 294 118 12 chr4 57957649 57957734 -144370613 + L3 LINE CR1 1056 1149 -428 1915 161 0 3 chr4 57958141 57958302 -144370045 - AluJb SINE Alu -21 291 130 216 0 0 0 chr4 57958302 57958326 -144370021 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1915 161 0 3 chr4 57958326 57958456 -144369891 - AluJb SINE Alu -182 130 1 22 0 0 0 chr4 57958529 57958551 -144369796 + AT_rich Low_complexity Low_complexity 1 22 0 1771 173 0 39 chr4 57958551 57958857 -144369490 - AluJo SINE Alu -18 294 1 759 298 107 41 chr4 57958857 57959222 -144369125 - L1ME LINE L1 -623 5524 5185 2210 103 17 3 chr4 57959222 57959522 -144368825 - AluSx SINE Alu -8 304 1 759 298 107 41 chr4 57959522 57960076 -144368271 - L1ME LINE L1 -962 5185 4539 645 194 12 133 chr4 57960230 57960478 -144367869 - L1MC4 LINE L1 -5 8037 7820 398 245 105 95 chr4 57960480 57960818 -144367529 - L1MEd LINE L1 -4773 1537 1204 2396 82 0 0 chr4 57960818 57961109 -144367238 - AluSg SINE Alu -18 292 2 398 245 105 95 chr4 57961109 57961406 -144366941 - L1MEd LINE L1 -5106 1204 860 495 214 0 0 chr4 57961468 57961566 -144366781 - U13 snRNA snRNA -2 102 5 242 314 25 25 chr4 57962230 57962348 -144365999 - L1MB3 LINE L1 -96 6087 5970 1078 148 0 0 chr4 57962392 57962541 -144365806 - AluSg/x SINE Alu -38 274 126 2296 119 0 0 chr4 57962541 57962851 -144365496 - AluSx SINE Alu -2 310 1 1105 159 25 179 chr4 57963218 57963602 -144364745 - MLT1A2 LTR MaLR -2 372 63 2101 128 3 3 chr4 57963602 57963899 -144364448 - AluSq SINE Alu -16 297 1 1105 159 25 179 chr4 57963899 57963954 -144364393 - MLT1A2 LTR MaLR -311 63 1 1633 162 50 36 chr4 57964896 57965199 -144363148 + AluJo SINE Alu 1 307 -5 1093 228 35 114 chr4 57965310 57965714 -144362633 - MLT1A2 LTR MaLR 0 374 3 1443 177 35 124 chr4 57966048 57966363 -144361984 - MLT1A1 LTR MaLR -4 361 86 1706 156 37 34 chr4 57966363 57966658 -144361689 - AluJo SINE Alu -16 296 1 1443 177 35 124 chr4 57966658 57966738 -144361609 - MLT1A1 LTR MaLR -279 86 1 407 305 33 13 chr4 57967069 57967220 -144361127 + MIR SINE MIR 5 158 -104 243 259 24 24 chr4 57967565 57967650 -144360697 - Charlie8 DNA MER1_type -2272 145 61 549 125 0 0 chr4 57967673 57967753 -144360594 + AluS SINE Alu 5 84 -229 870 106 65 0 chr4 57967772 57967895 -144360452 + AluSg SINE Alu 1 131 -179 1541 175 0 81 chr4 57967898 57968230 -144360117 + AluJb SINE Alu 1 305 -7 287 226 65 0 chr4 57968368 57968461 -144359886 - L2 LINE L2 -590 2724 2626 269 196 131 75 chr4 57968662 57968769 -144359578 - MIR SINE MIR -6 256 144 2018 105 0 0 chr4 57968769 57969027 -144359320 - AluSx SINE Alu -12 300 43 284 328 38 15 chr4 57969630 57969761 -144358586 + L2 LINE L2 3139 3272 0 2119 121 7 0 chr4 57970183 57970473 -144357874 - AluSx SINE Alu -19 293 2 659 196 0 36 chr4 57970528 57970666 -144357681 + FLAM_A SINE Alu 1 133 0 1695 169 3 33 chr4 57971019 57971321 -144357026 - AluJb SINE Alu -11 301 9 2241 108 0 3 chr4 57971726 57972054 -144356293 - AluSp SINE Alu 0 327 1 1869 174 7 3 chr4 57972078 57972388 -144355959 - AluSx SINE Alu -1 311 1 181 211 56 78 chr4 57972505 57972595 -144355752 + MIR SINE MIR 37 124 -84 446 264 0 11 chr4 57972597 57972775 -144355572 + GA-rich Low_complexity Low_complexity 3 178 0 4196 169 28 28 chr4 57973010 57973184 -144355163 + L1P4 LINE L1 4479 4652 -1514 1962 124 63 17 chr4 57973184 57973483 -144354864 - AluSq SINE Alu 0 313 1 4196 169 28 28 chr4 57973483 57974346 -144354001 + L1P4 LINE L1 4652 5500 -666 949 194 5 11 chr4 57974346 57974532 -144353815 + AluSp SINE Alu 1 185 -128 689 195 74 13 chr4 57976003 57976152 -144352195 + FAM SINE Alu 10 167 -18 365 104 0 4 chr4 57976992 57977078 -144351269 + Alu SINE Alu 237 313 0 1629 166 36 36 chr4 57977229 57977536 -144350811 - AluJo SINE Alu -1 311 5 27 29 0 0 chr4 57978313 57978347 -144350000 + AT_rich Low_complexity Low_complexity 1 34 0 1934 135 9 41 chr4 57978705 57978729 -144349618 - AluSx SINE Alu 0 312 289 312 27 0 0 chr4 57978729 57978766 -144349581 + (TA)n Simple_repeat Simple_repeat 1 37 0 1934 135 9 41 chr4 57978766 57979059 -144349288 - AluSx SINE Alu -23 289 5 931 113 0 35 chr4 57979059 57979200 -144349147 - AluJb SINE Alu -176 136 1 903 119 0 22 chr4 57980113 57980247 -144348100 - AluJo SINE Alu -170 142 12 200 100 0 0 chr4 57981295 57981325 -144347022 - L2 LINE L2 -38 3234 3205 257 308 178 14 chr4 57981904 57982050 -144346297 + MIR3 SINE MIR 8 177 -31 215 276 17 0 chr4 57982411 57982469 -144345878 - L2 LINE L2 -6 3266 3208 353 171 14 0 chr4 57983085 57983155 -144345192 - L1ME4a LINE L1 -2 6119 6049 725 183 0 36 chr4 57983201 57983383 -144344964 - FLAM_C SINE Alu 0 178 2 2031 152 0 10 chr4 57983532 57983842 -144344505 + AluJo SINE Alu 1 307 -5 1132 164 55 0 chr4 57983877 57984078 -144344269 - L1MC1 LINE L1 -8 6325 6114 1864 148 61 91 chr4 57985635 57985871 -144342476 - L1MB8 LINE L1 -1 6177 5935 187 51 0 51 chr4 57985871 57985910 -144342437 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 1610 202 3 3 chr4 57985910 57986192 -144342155 - AluJo SINE Alu -30 282 1 1864 148 61 91 chr4 57986192 57986414 -144341933 - L1MB8 LINE L1 -241 5937 5732 23 0 0 0 chr4 57986764 57986787 -144341560 + AT_rich Low_complexity Low_complexity 1 23 0 260 89 152 38 chr4 57987130 57987209 -144341138 - Charlie7 DNA MER1_type -41 2571 2484 222 37 0 0 chr4 57987283 57987310 -144341037 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 650 238 28 66 chr4 57988100 57988281 -144340066 - MER5B DNA MER1_type -4 174 1 460 229 62 21 chr4 57988921 57989065 -144339282 - MER103 DNA DNA -16 150 1 22 0 0 0 chr4 57989730 57989752 -144338595 + AT_rich Low_complexity Low_complexity 1 22 0 422 65 16 0 chr4 57990053 57990115 -144338232 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 243 229 12 6 chr4 57990568 57990734 -144337613 + (TA)n Simple_repeat Simple_repeat 2 168 0 804 156 0 8 chr4 57990790 57990912 -144337435 + AluJb SINE Alu 1 121 -191 686 227 0 0 chr4 57991196 57991337 -144337010 + FLAM_C SINE Alu 3 143 0 830 83 0 8 chr4 57991360 57991481 -144336866 + (TTCC)n Simple_repeat Simple_repeat 2 121 0 216 252 9 56 chr4 57991497 57991604 -144336743 + L2 LINE L2 2127 2228 -1086 2219 108 0 29 chr4 57991706 57992013 -144336334 - AluSx SINE Alu -14 298 1 277 262 60 0 chr4 57992224 57992308 -144336039 - L1MC1 LINE L1 -1943 5865 5777 23 0 0 0 chr4 57992367 57992390 -144335957 + AT_rich Low_complexity Low_complexity 1 23 0 818 136 51 0 chr4 57993046 57993164 -144335183 - FLAM_C SINE Alu -19 124 1 595 192 6 28 chr4 57993618 57993800 -144334547 + CT-rich Low_complexity Low_complexity 1 178 0 663 160 0 48 chr4 57993827 57994014 -144334333 + CT-rich Low_complexity Low_complexity 2 179 0 421 81 40 14 chr4 57994017 57994091 -144334256 + C-rich Low_complexity Low_complexity 1 76 0 545 178 0 20 chr4 57994099 57994200 -144334147 - FLAM_A SINE Alu -36 106 8 517 149 0 0 chr4 57995936 57996033 -144332314 - AluSg/x SINE Alu 0 307 211 220 250 0 0 chr4 57996745 57996801 -144331546 + L2 LINE L2 3214 3269 -3 3322 129 58 110 chr4 57997807 57998536 -144329811 + LTR8 LTR ERV1 1 691 0 200 407 0 0 chr4 57999600 57999686 -144328661 - MIR SINE MIR -144 118 33 270 0 0 0 chr4 58000286 58000316 -144328031 + (A)n Simple_repeat Simple_repeat 1 30 0 261 0 0 0 chr4 58000906 58000935 -144327412 + (A)n Simple_repeat Simple_repeat 1 29 0 3405 90 13 58 chr4 58002357 58002910 -144325437 - L1PB1 LINE L1 0 6151 5624 27 0 0 0 chr4 58003553 58003580 -144324767 + AT_rich Low_complexity Low_complexity 1 27 0 2635 162 2 14 chr4 58004988 58005421 -144322926 - MSTA LTR MaLR 0 428 1 9178 164 42 14 chr4 58005423 58006569 -144321778 - MSTA-int LTR MaLR -2 1649 445 828 137 15 15 chr4 58006569 58006700 -144321647 - FLAM_C SINE Alu -2 131 1 9178 164 42 14 chr4 58006700 58007158 -144321189 - MSTA-int LTR MaLR -1206 445 1 2649 102 92 8 chr4 58007160 58007353 -144320994 - MSTA LTR MaLR -2 426 251 372 22 0 0 chr4 58007353 58007398 -144320949 + (GA)n Simple_repeat Simple_repeat 1 45 0 2649 102 92 8 chr4 58007398 58007597 -144320750 - MSTA LTR MaLR -177 251 1 2220 117 0 37 chr4 58007671 58007995 -144320352 - AluSx SINE Alu 0 312 1 805 244 23 14 chr4 58008902 58009119 -144319228 + MIR SINE MIR 40 258 -4 259 111 0 0 chr4 58009119 58009198 -144319149 - Alu SINE Alu 0 336 258 334 149 176 0 chr4 58009514 58009588 -144318759 - L2 LINE L2 0 3313 3227 191 158 0 26 chr4 58012997 58013035 -144315312 - MER5B DNA MER1_type -119 59 23 346 266 21 0 chr4 58013250 58013344 -144315003 + MER5B DNA MER1_type 13 108 -70 5439 87 14 0 chr4 58013606 58014331 -144314016 + L1PA11 LINE L1 5440 6174 0 2272 118 14 9 chr4 58014339 58014685 -144313662 + L1PA15 LINE L1 5814 6161 -4 1026 211 74 40 chr4 58014714 58015065 -144313282 - L1MC5 LINE L1 -399 7562 7200 2302 121 0 0 chr4 58015066 58015371 -144312976 - AluSx SINE Alu -7 305 1 315 0 0 0 chr4 58015548 58015583 -144312764 + (TG)n Simple_repeat Simple_repeat 2 36 0 300 271 42 21 chr4 58016135 58016231 -144312116 - MIR SINE MIR -152 110 13 205 294 73 9 chr4 58018254 58018363 -144309984 - MER5B DNA MER1_type -62 116 1 21 36 0 0 chr4 58019685 58019713 -144308634 + AT_rich Low_complexity Low_complexity 1 28 0 2399 96 0 3 chr4 58019989 58020290 -144308057 - AluSq SINE Alu -13 300 1 796 190 98 16 chr4 58020763 58020947 -144307400 - L1MC1 LINE L1 0 6333 6135 497 264 61 15 chr4 58020999 58021196 -144307151 - L1ME LINE L1 -306 5815 5610 8798 152 38 11 chr4 58021609 58023402 -144304945 + L1P5 LINE L1 6 1748 -5114 2748 75 0 6 chr4 58023402 58023762 -144304585 + L1PA6 LINE L1 5797 6154 0 8798 152 38 11 chr4 58023762 58025125 -144303222 + L1P5 LINE L1 1748 3503 -3359 5766 183 4 4 chr4 58025226 58026595 -144301752 + L1P5 LINE L1 4870 6238 -629 810 108 0 0 chr4 58026697 58026799 -144301548 + AluSg/x SINE Alu 195 296 -13 724 167 0 9 chr4 58026799 58026913 -144301434 - AluJb SINE Alu -196 116 4 1580 175 13 36 chr4 58027080 58027389 -144300958 + AluJb SINE Alu 1 302 -10 968 257 100 2 chr4 58027418 58027706 -144300641 - MER74B LTR ERVL -67 555 82 246 350 51 17 chr4 58029064 58029181 -144299166 - MER91A DNA MER1_type -34 162 42 286 96 77 0 chr4 58029234 58029338 -144299009 + (TA)n Simple_repeat Simple_repeat 1 112 0 933 251 92 99 chr4 58029764 58030267 -144298080 - MLT1J LTR MaLR -12 499 1 792 294 106 33 chr4 58030586 58031096 -144297251 + L2 LINE L2 2431 2977 -337 189 178 0 0 chr4 58031327 58031372 -144296975 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 305 225 8 0 chr4 58031970 58032090 -144296257 + (TA)n Simple_repeat Simple_repeat 2 122 0 274 278 41 10 chr4 58033266 58033363 -144294984 - MER81 DNA DNA 0 114 15 1337 221 96 52 chr4 58033951 58034389 -144293958 + MLT1E3 LTR MaLR 6 462 -162 9726 26 3 223 chr4 58034394 58036171 -144292176 - SVA Other Other 0 1386 1 709 224 61 0 chr4 58036188 58036353 -144291994 + MLT1E3 LTR MaLR 480 654 0 4117 151 5 61 chr4 58036768 58036951 -144291396 + L1PB1 LINE L1 5417 5609 -542 2206 122 3 3 chr4 58036951 58037263 -144291084 - AluSx SINE Alu 0 312 1 4117 151 5 61 chr4 58037263 58037854 -144290493 + L1PB1 LINE L1 5609 6148 -3 205 360 22 11 chr4 58038182 58038271 -144290076 - MIR SINE MIR -65 143 54 210 333 17 0 chr4 58039883 58039943 -144288404 - L2 LINE L2 -38 3275 3215 279 128 43 0 chr4 58039951 58039998 -144288349 + LTR40a LTR ERVL 117 165 -354 658 146 58 51 chr4 58040056 58040193 -144288154 + LTR40a LTR ERVL 117 254 -265 4062 238 73 40 chr4 58040196 58040738 -144287609 - L1M4 LINE L1 -1680 4466 3943 1374 215 84 16 chr4 58040738 58041059 -144287288 - MER2 DNA MER2_type 0 344 2 4062 238 73 40 chr4 58041059 58041488 -144286859 - L1M4 LINE L1 -2203 3943 3529 1756 157 11 7 chr4 58041488 58041775 -144286572 - AluJo SINE Alu -24 288 1 4062 238 73 40 chr4 58041775 58042185 -144286162 - L1M4 LINE L1 -2617 3529 3032 1945 147 20 0 chr4 58042185 58042484 -144285863 - AluSx SINE Alu -7 305 1 4062 238 73 40 chr4 58042484 58042560 -144285787 - L1M4 LINE L1 -3114 3032 2960 472 313 78 45 chr4 58043373 58043641 -144284706 + MLT1J LTR MaLR 212 488 -23 1836 213 53 159 chr4 58043733 58044070 -144284277 + L2 LINE L2 2004 2375 -938 556 14 27 0 chr4 58044070 58044143 -144284204 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 1836 213 53 159 chr4 58044143 58044158 -144284189 + L2 LINE L2 2375 2390 -923 632 168 9 28 chr4 58044158 58044265 -144284082 - FLAM_A SINE Alu -22 120 16 1836 213 53 159 chr4 58044265 58044308 -144284039 + L2 LINE L2 2390 2436 -877 1616 144 0 8 chr4 58044308 58044558 -144283789 + AluJb SINE Alu 60 307 -5 1836 213 53 159 chr4 58044558 58044569 -144283778 + L2 LINE L2 2436 2447 -866 2156 129 7 7 chr4 58044569 58044878 -144283469 + AluSg SINE Alu 1 309 -1 1836 213 53 159 chr4 58044878 58045849 -144282498 + L2 LINE L2 2447 3313 0 338 217 0 0 chr4 58046706 58046766 -144281581 + MER96 DNA MER1_type? 116 175 0 363 315 47 0 chr4 58047682 58047831 -144280516 + L2 LINE L2 2393 2548 -766 306 288 131 7 chr4 58047859 58048012 -144280335 - MIR SINE MIR -13 249 78 2402 100 0 0 chr4 58048679 58048990 -144279357 - AluY SINE Alu 0 311 1 641 361 4 21 chr4 58049009 58049250 -144279097 + L2 LINE L2 2566 2802 -512 375 213 50 0 chr4 58049448 58049528 -144278819 - LTR33A LTR ERVL -7 516 433 299 245 126 49 chr4 58049538 58049681 -144278666 - LTR50 LTR ERVL -161 634 481 255 286 45 30 chr4 58049798 58049963 -144278384 + L2 LINE L2 2793 2958 -314 1612 237 154 14 chr4 58049963 58050482 -144277865 - MLT1G1 LTR MaLR -2 593 2 261 408 32 0 chr4 58050631 58050788 -144277559 + L2 LINE L2 3107 3268 -4 1404 186 10 73 chr4 58051195 58051522 -144276825 + AluJo SINE Alu 1 308 0 426 335 25 6 chr4 58051736 58051894 -144276453 - MIR SINE MIR -46 216 56 270 277 59 0 chr4 58052124 58052225 -144276122 + L1ME4a LINE L1 5538 5644 -477 1204 185 28 0 chr4 58052250 58052466 -144275881 + AluJo SINE Alu 1 222 -90 347 183 63 78 chr4 58052537 58052679 -144275668 + L1ME4a LINE L1 5748 5887 -234 1278 165 40 53 chr4 58053339 58053661 -144274686 - MER33 DNA MER1_type 0 324 7 14490 195 43 7 chr4 58053712 58059989 -144268358 + L1PB1 LINE L1 6 6867 0 338 277 45 0 chr4 58060028 58060140 -144268207 + L1ME4a LINE L1 5708 5824 -297 1801 118 52 24 chr4 58060140 58060429 -144267918 - AluSx SINE Alu -15 297 1 39 22 0 0 chr4 58060429 58060475 -144267872 + AT_rich Low_complexity Low_complexity 1 46 0 638 257 40 101 chr4 58060684 58061167 -144267180 - L2 LINE L2 -30 3283 2325 2551 228 132 29 chr4 58061294 58062160 -144266187 - L2 LINE L2 -981 2333 1379 263 257 27 0 chr4 58062163 58062237 -144266110 + L1ME4a LINE L1 5974 6049 -72 227 200 0 0 chr4 58062337 58062377 -144265970 + MIR SINE MIR 67 106 -156 21 57 0 0 chr4 58062378 58062413 -144265934 + AT_rich Low_complexity Low_complexity 1 35 0 659 153 27 0 chr4 58062413 58062524 -144265823 - L1MA5A LINE L1 -3 6294 6181 887 221 321 12 chr4 58064124 58064464 -144263883 + MLT1H LTR MaLR 1 445 -104 1999 160 0 0 chr4 58064527 58064834 -144263513 - AluJb SINE Alu -5 307 1 408 254 146 16 chr4 58064893 58065057 -144263290 + L1MC/D LINE L1 5602 5794 -2014 3719 152 33 23 chr4 58065057 58065720 -144262627 - L1PB4 LINE L1 -3 6153 5484 408 254 146 16 chr4 58065720 58065740 -144262607 + L1MC/D LINE L1 5794 5810 -1998 22 70 0 0 chr4 58066329 58066372 -144261975 + AT_rich Low_complexity Low_complexity 1 43 0 364 245 61 0 chr4 58066731 58066829 -144261518 - L1ME4a LINE L1 -49 6072 5969 1987 115 7 4 chr4 58066906 58067221 -144261126 + AluSq SINE Alu 5 320 0 795 235 109 9 chr4 58067431 58067652 -144260695 - MIR SINE MIR -10 252 10 308 304 13 0 chr4 58068367 58068446 -144259901 + L2 LINE L2 3180 3259 -54 644 270 12 38 chr4 58068704 58068938 -144259409 - MIR SINE MIR -10 252 27 218 220 100 0 chr4 58069190 58069240 -144259107 - L2 LINE L2 -12 3301 3247 796 296 143 2 chr4 58069297 58069696 -144258651 + L1MC4a LINE L1 5561 6015 -1793 538 306 88 5 chr4 58070108 58070324 -144258023 - L2 LINE L2 -252 3061 2828 221 295 186 21 chr4 58070802 58070995 -144257352 + L2 LINE L2 3003 3227 -86 341 231 182 84 chr4 58071434 58071637 -144256710 + MIR SINE MIR 30 252 -10 806 309 76 40 chr4 58071911 58072384 -144255963 - MLT1J LTR MaLR 0 511 22 255 299 35 23 chr4 58073226 58073313 -144255034 - MIR SINE MIR -105 157 70 2339 82 14 0 chr4 58073350 58073643 -144254704 - AluSp SINE Alu -15 298 2 25 31 0 0 chr4 58074681 58074713 -144253634 + AT_rich Low_complexity Low_complexity 1 32 0 815 217 0 7 chr4 58074727 58074879 -144253468 - FRAM SINE Alu -30 146 1 694 146 49 116 chr4 58074943 58075045 -144253302 + MLT1E LTR MaLR 3 91 -502 1935 169 0 3 chr4 58075045 58075347 -144253000 - AluJb SINE Alu -11 301 1 694 146 49 116 chr4 58075347 58075408 -144252939 + MLT1E LTR MaLR 91 155 -438 852 259 69 59 chr4 58076018 58076305 -144252042 - LTR16C LTR ERVL 0 491 197 189 0 0 0 chr4 58076305 58076326 -144252021 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 852 259 69 59 chr4 58076326 58076428 -144251919 - LTR16C LTR ERVL -294 197 98 251 228 70 0 chr4 58076728 58076785 -144251562 - MER94 DNA DNA -61 73 13 2053 140 17 0 chr4 58076904 58077204 -144251143 + AluSx SINE Alu 1 305 -7 326 276 35 9 chr4 58077265 58077381 -144250966 + LTR16C LTR ERVL 306 424 -67 284 247 180 0 chr4 58078716 58078805 -144249542 + MIR SINE MIR 158 262 0 21 0 0 0 chr4 58079373 58079394 -144248953 + AT_rich Low_complexity Low_complexity 1 21 0 534 229 43 21 chr4 58080236 58080376 -144247971 - L2 LINE L2 -597 2717 2575 1020 178 9 93 chr4 58080379 58080604 -144247743 - MER20 DNA MER1_type -13 206 1 676 167 177 56 chr4 58080604 58080819 -144247528 - L2 LINE L2 -729 2585 2345 348 48 0 48 chr4 58081680 58081742 -144246605 + (TTCTC)n Simple_repeat Simple_repeat 5 63 0 817 150 57 7 chr4 58081744 58081884 -144246463 - FRAM SINE Alu -32 144 1 1046 132 93 0 chr4 58082624 58082806 -144245541 + MER3 DNA MER1_type 6 204 -5 213 257 149 14 chr4 58082928 58083002 -144245345 - L2 LINE L2 -15 3257 3174 248 259 59 47 chr4 58084005 58084090 -144244257 - L2 LINE L2 0 3313 3228 182 294 176 10 chr4 58084211 58084313 -144244034 - L2 LINE L2 -211 3061 2943 379 328 20 40 chr4 58084313 58084514 -144243833 + L2 LINE L2 3110 3306 -7 687 336 76 3 chr4 58084530 58084872 -144243475 - L2 LINE L2 -388 2926 2560 3866 142 10 44 chr4 58084891 58084907 -144243440 + L1MB8 LINE L1 5295 5310 -868 2283 114 0 0 chr4 58084907 58085204 -144243143 + AluSx SINE Alu 1 297 -15 3866 142 10 44 chr4 58085204 58085892 -144242455 + L1MB8 LINE L1 5310 5973 -205 397 319 34 48 chr4 58085606 58085960 -144242387 + L1PB3 LINE L1 5682 6030 -124 * 207 254 62 108 chr4 58089229 58089359 -144238988 - L2 LINE L2 -5 3267 3144 581 203 159 6 chr4 58089826 58089984 -144238363 - MER5A DNA MER1_type 0 189 4 357 159 266 53 chr4 58090252 58090365 -144237982 - MIR SINE MIR -106 156 20 1976 129 0 14 chr4 58090443 58090758 -144237589 + AluSx SINE Alu 1 311 0 1610 217 48 46 chr4 58090976 58091349 -144236998 - MLT1A2 LTR MaLR 0 374 1 2019 142 42 17 chr4 58092150 58092503 -144235844 + MLT1B LTR MaLR 27 388 -2 684 179 13 54 chr4 58092612 58092783 -144235564 - MLT1B LTR MaLR -155 235 90 2052 136 7 3 chr4 58092805 58093115 -144235232 - AluSx SINE Alu -1 311 1 380 167 0 13 chr4 58093152 58093230 -144235117 + CT-rich Low_complexity Low_complexity 1 77 0 1112 204 19 9 chr4 58093288 58093499 -144234848 - AluJo SINE Alu -96 216 4 364 133 17 0 chr4 58093500 58093560 -144234787 - MLT1B LTR MaLR -406 61 1 2086 139 10 0 chr4 58095135 58095444 -144232903 + AluJb SINE Alu 1 312 0 1539 236 50 17 chr4 58095909 58096269 -144232078 + MLT1A2 LTR MaLR 1 372 -2 322 332 144 38 chr4 58099037 58099550 -144228797 + L2 LINE L2 2704 3271 -1 357 106 0 0 chr4 58099645 58099692 -144228655 - THE1B LTR MaLR 0 364 318 201 39 0 0 chr4 58099694 58099720 -144228627 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2542 127 6 0 chr4 58099720 58100082 -144228265 - L1PB1 LINE L1 -6 6145 5782 205 218 18 18 chr4 58100105 58100160 -144228187 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 3980 143 10 3 chr4 58100160 58101259 -144227088 - L1PB1 LINE L1 -360 5791 4691 2372 103 19 6 chr4 58101259 58101579 -144226768 - THE1B LTR MaLR -38 326 3 564 260 0 8 chr4 58101669 58101792 -144226555 - L2 LINE L2 -1 3312 3191 1025 205 54 5 chr4 58101821 58102026 -144226321 + MIR SINE MIR 48 262 0 215 140 0 120 chr4 58102018 58102068 -144226279 - MIR SINE MIR -107 155 112 * 587 276 35 49 chr4 58102504 58102707 -144225640 + MIR SINE MIR 63 262 0 615 280 53 44 chr4 58102935 58103274 -144225073 - MLT1I LTR MaLR -6 403 62 2263 113 3 3 chr4 58104260 58104570 -144223777 + AluSg SINE Alu 1 310 0 429 311 140 9 chr4 58104714 58104936 -144223411 - MIR SINE MIR -10 252 2 212 283 0 0 chr4 58105276 58105329 -144223018 + MIR SINE MIR 81 133 -129 546 231 55 50 chr4 58108923 58109122 -144219225 + MIR SINE MIR 63 262 0 673 142 67 8 chr4 58109520 58109640 -144218707 + L2 LINE L2 3187 3313 0 451 327 54 30 chr4 58109631 58110004 -144218343 - L2 LINE L2 -882 2432 2051 * 1984 100 43 4 chr4 58110007 58110287 -144218060 + AluSx SINE Alu 1 291 -21 279 0 0 0 chr4 58111704 58111735 -144216612 + (TG)n Simple_repeat Simple_repeat 1 31 0 195 42 0 0 chr4 58111734 58111758 -144216589 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 245 185 19 0 chr4 58112082 58112136 -144216211 + (TG)n Simple_repeat Simple_repeat 1 55 0 1700 173 0 3 chr4 58112307 58112615 -144215732 + AluJo SINE Alu 1 307 0 208 277 0 0 chr4 58112894 58112941 -144215406 + GA-rich Low_complexity Low_complexity 2 48 0 863 197 0 0 chr4 58113962 58114114 -144214233 + FRAM SINE Alu 4 155 -21 1401 165 142 0 chr4 58114590 58114844 -144213503 + AluJo SINE Alu 5 294 -18 351 250 31 88 chr4 58114909 58115101 -144213246 + L1ME4a LINE L1 5879 6059 -62 817 266 66 95 chr4 58115223 58115769 -144212578 - LTR67 LTR ERVL 0 557 28 2300 81 0 16 chr4 58115769 58116079 -144212268 + AluSg SINE Alu 1 305 -5 729 258 174 35 chr4 58116133 58116478 -144211869 - MLT1K LTR MaLR -10 578 186 613 276 25 31 chr4 58116559 58116755 -144211592 + MIR SINE MIR 58 252 -10 238 268 18 0 chr4 58116836 58116892 -144211455 - L2 LINE L2 -1012 2302 2246 625 291 187 23 chr4 58117876 58118339 -144210008 + L2 LINE L2 2478 3058 -255 334 191 95 11 chr4 58118340 58118430 -144209917 + MER34 LTR ERV1 1 89 -453 759 230 86 59 chr4 58118435 58118872 -144209475 + LTR48B LTR ERV1 134 778 -9 2251 193 24 17 chr4 58119451 58119918 -144208429 + L1MC3 LINE L1 7314 7783 -2 24 0 0 0 chr4 58120655 58120679 -144207668 + AT_rich Low_complexity Low_complexity 1 24 0 346 263 97 0 chr4 58120862 58120976 -144207371 - MLT1K LTR MaLR -424 125 1 225 163 23 58 chr4 58121288 58121361 -144206986 - L1ME3A LINE L1 -208 5962 5891 7979 45 5 6 chr4 58121361 58122259 -144206088 - MER11D LTR ERVK 0 897 1 225 163 23 58 chr4 58122259 58122271 -144206076 - L1ME3A LINE L1 -279 5891 5880 872 307 27 45 chr4 58122325 58122853 -144205494 - L1MDa LINE L1 -3291 3249 2713 2298 113 0 0 chr4 58122853 58123154 -144205193 - AluSg SINE Alu -9 301 1 872 307 27 45 chr4 58123154 58123165 -144205182 - L1MDa LINE L1 -3827 2713 2703 2314 94 0 10 chr4 58123165 58123464 -144204883 - AluY SINE Alu -15 296 1 872 307 27 45 chr4 58123464 58123656 -144204691 - L1MDa LINE L1 -3837 2703 2530 2968 171 24 77 chr4 58123945 58124530 -144203817 - MLT2B3 LTR ERVL 0 554 1 2620 159 77 35 chr4 58124770 58125419 -144202928 - L1MDa LINE L1 -4463 2077 1402 1372 193 0 0 chr4 58125438 58125671 -144202676 - L1MDa LINE L1 -6275 265 33 344 294 118 48 chr4 58125694 58126230 -144202117 - L1MEc LINE L1 -940 1550 1174 616 216 0 0 chr4 58126247 58126363 -144201984 - MLT1A1 LTR MaLR -116 249 134 508 289 24 28 chr4 58126396 58126607 -144201740 - L1MEc LINE L1 -4988 1131 922 1064 221 7 40 chr4 58126652 58126955 -144201392 - L1MC5 LINE L1 -38 7923 7631 876 275 60 105 chr4 58126956 58127895 -144200452 - L1MEc LINE L1 -5219 900 5 1906 175 48 17 chr4 58128009 58128142 -144200205 - MLT1A1 LTR MaLR 0 365 238 2413 100 109 0 chr4 58128142 58128482 -144199865 - MER51B LTR ERV1 0 377 1 1906 175 48 17 chr4 58128482 58128702 -144199645 - MLT1A1 LTR MaLR -127 238 1 320 186 139 35 chr4 58130093 58130179 -144198168 + MIR SINE MIR 47 141 -67 4340 84 13 16 chr4 58130474 58131030 -144197317 - MER41A LTR ERV1 0 554 1 269 241 219 36 chr4 58131107 58131204 -144197143 - MER112 DNA MER1_type -97 163 85 2565 132 50 34 chr4 58131204 58131642 -144196705 + MER65A LTR ERV1 1 445 0 269 241 219 36 chr4 58131642 58131681 -144196666 - MER112 DNA MER1_type -175 85 2 308 193 49 19 chr4 58131700 58131980 -144196367 + AluJo SINE Alu 1 302 0 699 259 207 33 chr4 58132072 58132527 -144195820 + MLT1H LTR MaLR 3 536 -13 405 95 0 0 chr4 58133370 58133433 -144194914 + (TG)n Simple_repeat Simple_repeat 2 64 0 198 358 60 0 chr4 58133648 58133715 -144194632 - L2 LINE L2 -26 3246 3176 3068 84 28 79 chr4 58134797 58135263 -144193084 + MLT2A1 LTR ERVL 1 442 -2 238 275 88 22 chr4 58135349 58135440 -144192907 - MIR3 SINE MIR -14 194 98 187 236 56 42 chr4 58136167 58136239 -144192108 + MIR SINE MIR 128 200 -62 1550 189 0 0 chr4 58136365 58136608 -144191739 - AluJo SINE Alu -32 280 38 292 315 100 45 chr4 58136628 58136828 -144191519 - MIR SINE MIR -19 243 33 1876 184 7 0 chr4 58138524 58138833 -144189514 + AluJo SINE Alu 2 312 0 2367 103 3 0 chr4 58139863 58140175 -144188172 - AluSp SINE Alu 0 313 1 198 0 0 0 chr4 58140507 58140529 -144187818 + (A)n Simple_repeat Simple_repeat 1 22 0 1597 210 3 13 chr4 58140913 58141227 -144187120 + AluJb SINE Alu 1 311 -1 25 65 0 0 chr4 58141267 58141313 -144187034 + AT_rich Low_complexity Low_complexity 1 46 0 186 284 104 0 chr4 58141552 58141619 -144186728 + L2 LINE L2 3153 3226 -46 1997 132 17 3 chr4 58142802 58143089 -144185258 + AluSx SINE Alu 1 291 -21 294 73 0 0 chr4 58143494 58143535 -144184812 + (TG)n Simple_repeat Simple_repeat 2 42 0 199 304 0 54 chr4 58144013 58144105 -144184242 + MIR SINE MIR 98 184 -78 1872 172 0 0 chr4 58145159 58145456 -144182891 + AluJb SINE Alu 1 297 -15 196 313 30 15 chr4 58145687 58145754 -144182593 - L2 LINE L2 -241 3072 3005 1233 186 35 31 chr4 58146426 58146744 -144181603 + MER33 DNA MER1_type 6 324 0 426 357 65 0 chr4 58147577 58147745 -144180602 - MIR SINE MIR -71 191 13 221 376 50 0 chr4 58148020 58148121 -144180226 + L2 LINE L2 3146 3251 -21 1746 151 7 23 chr4 58150162 58150466 -144177881 + AluJb SINE Alu 12 310 -2 307 211 28 28 chr4 58150558 58150629 -144177718 - MER5B DNA MER1_type -58 120 50 4661 155 4 44 chr4 58150643 58151772 -144176575 - L1MB1 LINE L1 0 6168 5086 316 191 0 44 chr4 58151773 58151841 -144176506 - MER5B DNA MER1_type -112 66 2 585 162 36 9 chr4 58152133 58152244 -144176103 + L2 LINE L2 3191 3304 -9 27 0 0 0 chr4 58153653 58153680 -144174667 + AT_rich Low_complexity Low_complexity 1 27 0 184 311 101 0 chr4 58154279 58154349 -144173998 + MIR SINE MIR 41 113 -105 516 279 147 29 chr4 58154362 58154566 -144173781 + MIR SINE MIR 22 249 -13 198 343 19 19 chr4 58154990 58155095 -144173252 + L2 LINE L2 3169 3273 -40 787 265 18 32 chr4 58155158 58155377 -144172970 + MIR SINE MIR 5 220 -42 21 0 0 0 chr4 58157192 58157213 -144171134 + AT_rich Low_complexity Low_complexity 1 21 0 547 319 38 19 chr4 58157323 58157533 -144170814 + MIR SINE MIR 14 227 -35 231 400 30 0 chr4 58157713 58157813 -144170534 - L2 LINE L2 -20 3252 3150 21 0 0 0 chr4 58157923 58157944 -144170403 + AT_rich Low_complexity Low_complexity 1 21 0 636 319 39 9 chr4 58159459 58159691 -144168656 - MIR SINE MIR -16 246 8 290 352 21 28 chr4 58159759 58159855 -144168492 - MIR3 SINE MIR -44 164 68 1327 164 142 25 chr4 58159855 58160129 -144168218 + AluJo SINE Alu 1 306 -6 290 352 21 28 chr4 58160129 58160177 -144168170 - MIR3 SINE MIR -140 68 21 386 279 116 29 chr4 58160879 58161291 -144167056 - LTR33 LTR ERVL 0 521 38 318 248 26 68 chr4 58161927 58161977 -144166370 + MIR SINE MIR 15 66 -196 6223 120 25 47 chr4 58161977 58163072 -144165275 + MER11C LTR ERVK 1 1071 0 318 248 26 68 chr4 58163072 58163138 -144165209 + MIR SINE MIR 66 126 -136 335 275 50 17 chr4 58163138 58163258 -144165089 + MIR SINE MIR 90 213 -49 12238 139 18 117 chr4 58163276 58166299 -144162048 + L1P LINE L1 12 2733 -3413 186 133 0 0 chr4 58167706 58167736 -144160611 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 644 205 27 0 chr4 58167751 58167863 -144160484 - FLAM_A SINE Alu -18 115 1 327 25 0 0 chr4 58167993 58168033 -144160314 + (TG)n Simple_repeat Simple_repeat 2 41 0 359 322 88 67 chr4 58168033 58168272 -144160075 - MIR SINE MIR -17 245 2 733 247 43 63 chr4 58168337 58168592 -144159755 + MIR SINE MIR 13 262 0 919 270 79 60 chr4 58169822 58170318 -144158029 + MLT1J LTR MaLR 1 505 -6 362 301 80 48 chr4 58170511 58170743 -144157604 - L1MEd LINE L1 -4925 1194 952 2028 141 0 17 chr4 58170743 58171115 -144157232 - AluSx SINE Alu 0 312 1 362 301 80 48 chr4 58171115 58171131 -144157216 - L1MEd LINE L1 -5167 952 938 4083 193 50 23 chr4 58171151 58172078 -144156269 + L1PA6 LINE L1 11 962 -5184 3989 84 35 5 chr4 58172121 58173123 -144155224 + MER11A LTR ERVK 1 1266 0 27418 82 7 67 chr4 58173125 58174015 -144154332 + L1PA6 LINE L1 978 1919 -4235 2107 132 3 10 chr4 58174015 58174319 -144154028 + AluSx SINE Alu 1 302 -10 27418 82 7 67 chr4 58174319 58178782 -144149565 + L1PA6 LINE L1 1919 6000 -154 3989 98 25 6 chr4 58178882 58179565 -144148782 + MER11A LTR ERVK 429 1266 0 25630 92 7 18 chr4 58179567 58180457 -144147890 + L1PA6 LINE L1 978 1876 -4270 2107 132 3 10 chr4 58180457 58180761 -144147586 + AluSx SINE Alu 1 302 -10 25630 92 7 18 chr4 58180761 58183817 -144144530 + L1PA6 LINE L1 1876 4882 -1264 5471 68 6 12 chr4 58183917 58184641 -144143706 + L1PA6 LINE L1 5425 6143 -11 724 190 19 0 chr4 58184662 58184820 -144143527 - L1MA6 LINE L1 -7 6293 6133 654 186 40 15 chr4 58184826 58185028 -144143319 - L1MCa LINE L1 -3947 2617 2458 4556 69 22 6 chr4 58185028 58186041 -144142306 + MER11A LTR ERVK 1 1266 0 1396 225 37 14 chr4 58186041 58186319 -144142028 - L1MCa LINE L1 -4101 2484 2214 1895 174 25 0 chr4 58186319 58186676 -144141671 + MER47A DNA MER2_type 1 366 0 1396 225 37 14 chr4 58186676 58187021 -144141326 - L1MCa LINE L1 -4371 2214 1832 1088 185 87 33 chr4 58187028 58187095 -144141252 - MLT1B LTR MaLR 0 390 328 405 0 0 0 chr4 58187095 58187140 -144141207 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1088 185 87 33 chr4 58187140 58187407 -144140940 - MLT1B LTR MaLR -62 328 38 2341 200 45 28 chr4 58187473 58187832 -144140515 - L1MCa LINE L1 -4893 1671 1294 2454 93 0 0 chr4 58187832 58188143 -144140204 - AluY SINE Alu 0 311 1 2341 200 45 28 chr4 58188143 58188452 -144139895 - L1MCa LINE L1 -5270 1294 992 1127 232 12 12 chr4 58188455 58188714 -144139633 - L1MCa LINE L1 -5172 873 615 1099 163 0 0 chr4 58188714 58188880 -144139467 + AluJb SINE Alu 134 299 -13 1605 246 75 58 chr4 58188880 58189510 -144138837 - L1MCa LINE L1 -5421 624 1 2115 138 0 3 chr4 58189554 58189865 -144138482 - AluSx SINE Alu -2 310 1 180 0 0 0 chr4 58190021 58190041 -144138306 + (TAA)n Simple_repeat Simple_repeat 2 21 0 711 159 0 0 chr4 58190712 58190819 -144137528 - AluJo SINE Alu -166 146 40 611 242 132 32 chr4 58192275 58192465 -144135882 - MER63A DNA MER1_type -1 209 1 1690 187 3 7 chr4 58192952 58193246 -144135101 + AluJb SINE Alu 1 293 -19 317 298 62 39 chr4 58193331 58193539 -144134808 - L2 LINE L2 -222 3050 2838 676 297 148 38 chr4 58193592 58194167 -144134180 - L2 LINE L2 -596 2718 2081 559 207 43 82 chr4 58194167 58194399 -144133948 + L1MB8 LINE L1 5956 6178 0 1826 120 51 4 chr4 58194447 58194721 -144133626 + AluSx SINE Alu 26 312 0 271 177 0 0 chr4 58195217 58195271 -144133076 + L2 LINE L2 3209 3303 -10 1307 166 37 5 chr4 58195938 58196155 -144132192 - AluJb SINE Alu -4 308 85 1797 93 9 0 chr4 58196182 58196408 -144131939 - AluSc SINE Alu -11 298 71 26 0 0 0 chr4 58196903 58196929 -144131418 + AT_rich Low_complexity Low_complexity 1 26 0 186 312 29 80 chr4 58197431 58197569 -144130778 + L2 LINE L2 2937 3067 -205 1416 242 74 94 chr4 58197698 58198290 -144130057 - L1ME LINE L1 -5366 704 127 1833 175 69 23 chr4 58198290 58198639 -144129708 - MLT1A1 LTR MaLR 0 365 1 1416 242 74 94 chr4 58198639 58198760 -144129587 - L1ME LINE L1 -5943 127 5 205 254 178 92 chr4 58199345 58199530 -144128817 + L3 LINE CR1 614 814 -763 1838 146 0 64 chr4 58199574 58199903 -144128444 + AluJo SINE Alu 4 311 -1 387 329 6 37 chr4 58200353 58200517 -144127830 + L2 LINE L2 3153 3311 -2 289 265 120 26 chr4 58200529 58200646 -144127701 - MIR3 SINE MIR -48 160 33 * 625 271 59 46 chr4 58200629 58200932 -144127415 + L2 LINE L2 2996 3302 -11 * 721 276 101 4 chr4 58200904 58201132 -144127215 - MIR SINE MIR -4 258 9 328 278 123 27 chr4 58201826 58201953 -144126394 - MIR SINE MIR -46 162 21 760 252 52 74 chr4 58202029 58202354 -144125993 - L2 LINE L2 0 3313 2996 188 274 150 35 chr4 58202341 58202454 -144125893 + MIR3 SINE MIR 35 160 -48 * 452 276 42 52 chr4 58202466 58202658 -144125689 - L2 LINE L2 -2 3311 3122 252 185 0 0 chr4 58203159 58203213 -144125134 + GA-rich Low_complexity Low_complexity 3 56 0 362 281 79 30 chr4 58204300 58204464 -144123883 - MIR SINE MIR -1 261 90 207 0 0 0 chr4 58204482 58204505 -144123842 + (CA)n Simple_repeat Simple_repeat 2 24 0 415 258 22 19 chr4 58204548 58204755 -144123592 + MIR SINE MIR 3 260 -2 477 268 9 9 chr4 58204969 58205081 -144123266 - L2 LINE L2 0 3313 3202 1905 161 26 71 chr4 58205299 58205395 -144122952 + MLT1A1 LTR MaLR 3 102 -263 2872 22 0 0 chr4 58205395 58205713 -144122634 - AluYb8 SINE Alu 0 318 1 1905 161 26 71 chr4 58205713 58205996 -144122351 + MLT1A1 LTR MaLR 102 365 0 2033 164 0 3 chr4 58206789 58207100 -144121247 + AluJb SINE Alu 1 310 -2 602 292 0 12 chr4 58207954 58208125 -144120222 - MER117 DNA MER1_type -26 171 3 450 284 30 0 chr4 58208274 58208408 -144119939 - MIR SINE MIR -34 228 91 404 296 128 10 chr4 58208496 58208692 -144119655 + Charlie7 DNA MER1_type 80 298 -2314 3335 206 108 27 chr4 58208725 58209771 -144118576 + Charlie7 DNA MER1_type 1482 2612 0 780 211 101 14 chr4 58210897 58211105 -144117242 + L1ME3 LINE L1 5935 6160 -2 1609 195 0 17 chr4 58211340 58211638 -144116709 - AluJo SINE Alu -19 293 1 394 320 51 11 chr4 58211663 58211838 -144116509 - MIR SINE MIR -18 244 63 1702 150 63 3 chr4 58211928 58212214 -144116133 - AluSx SINE Alu -9 303 1 342 311 0 3 chr4 58212736 58212841 -144115506 + MIR SINE MIR 53 155 -53 570 198 6 79 chr4 58212848 58213025 -144115322 - MIR SINE MIR 0 262 99 2345 97 6 0 chr4 58213818 58214129 -144114218 + AluSp SINE Alu 1 313 0 218 274 48 0 chr4 58214202 58214264 -144114083 + L2 LINE L2 3248 3312 -1 481 287 14 56 chr4 58214546 58214762 -144113585 - LTR67 LTR ERVL -1 556 350 315 0 0 0 chr4 58215322 58215357 -144112990 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1866 156 0 11 chr4 58215359 58215642 -144112705 - AluSx SINE Alu -32 280 1 309 259 78 26 chr4 58215956 58216072 -144112275 - MIR SINE MIR -114 148 27 757 285 124 32 chr4 58216290 58216745 -144111602 - MLT1K LTR MaLR 0 588 41 350 265 0 24 chr4 58216850 58216933 -144111414 + L2 LINE L2 3190 3270 -2 684 194 82 24 chr4 58218446 58218616 -144109731 - MER104 DNA MER2_type 0 180 1 2169 115 3 0 chr4 58219077 58219364 -144108983 - AluSx SINE Alu -20 292 5 186 43 0 0 chr4 58220393 58220416 -144107931 + (CA)n Simple_repeat Simple_repeat 2 24 0 881 323 10 36 chr4 58221237 58221540 -144106807 + MLT1K LTR MaLR 3 297 -291 900 193 45 0 chr4 58221550 58221726 -144106621 - MER20 DNA MER1_type -5 214 31 430 259 89 44 chr4 58221791 58221949 -144106398 + MLT1K LTR MaLR 321 485 -103 4861 221 37 33 chr4 58221956 58222467 -144105880 + L1ME1 LINE L1 4084 4591 -1575 2237 102 0 16 chr4 58222467 58222770 -144105577 - AluSx SINE Alu -14 298 1 4861 221 37 33 chr4 58222770 58224325 -144104022 + L1ME1 LINE L1 4591 6161 -5 1698 171 26 7 chr4 58224417 58224721 -144103626 - MER58B DNA MER1_type -31 310 1 713 260 64 92 chr4 58225114 58225506 -144102841 + L2 LINE L2 2931 3311 -2 21 36 0 0 chr4 58226001 58226029 -144102318 + AT_rich Low_complexity Low_complexity 1 28 0 702 223 17 6 chr4 58226583 58226758 -144101589 + MER104 DNA MER2_type 4 180 0 22 0 0 0 chr4 58226772 58226794 -144101553 + AT_rich Low_complexity Low_complexity 1 22 0 266 235 3 27 chr4 58227666 58227757 -144100590 + MIR SINE MIR 25 111 -97 312 192 0 2 chr4 58227758 58227825 -144100522 - MLT2D LTR ERVL 0 414 357 2448 79 0 3 chr4 58227916 58228221 -144100126 + AluY SINE Alu 1 304 -7 369 0 0 0 chr4 58228221 58228262 -144100085 + (TA)n Simple_repeat Simple_repeat 1 41 0 1558 219 35 79 chr4 58228289 58228810 -144099537 - MLT2B1 LTR ERVL -22 498 1 322 250 23 0 chr4 58228811 58228899 -144099448 + MIR SINE MIR 112 201 -61 186 43 0 0 chr4 58230787 58230810 -144097537 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 357 43 0 0 chr4 58230809 58230856 -144097491 + (GA)n Simple_repeat Simple_repeat 2 48 0 607 324 53 28 chr4 58231197 58231518 -144096829 - L2 LINE L2 0 3313 2985 505 299 92 9 chr4 58232436 58232653 -144095694 + MIR SINE MIR 14 248 -14 861 162 17 23 chr4 58232763 58232936 -144095411 - MER53 DNA DNA -7 182 11 360 119 0 0 chr4 58233245 58233304 -144095043 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 1454 202 44 45 chr4 58233585 58233757 -144094590 - MSTD LTR MaLR -28 362 191 2150 104 0 0 chr4 58233757 58234060 -144094287 - AluSg SINE Alu 0 303 1 1454 202 44 45 chr4 58234060 58234248 -144094099 - MSTD LTR MaLR -199 191 1 311 325 33 20 chr4 58234248 58234399 -144093948 - MIR SINE MIR -104 158 6 305 208 14 14 chr4 58235396 58235468 -144092879 - L2 LINE L2 0 3313 3242 438 238 6 116 chr4 58235539 58235703 -144092644 + MER69 DNA AcHobo 2 147 -2379 2077 192 24 3 chr4 58236508 58236888 -144091459 + MLT1B LTR MaLR 1 388 -2 2391 100 0 3 chr4 58237173 58237483 -144090864 + AluSx SINE Alu 1 309 -3 316 262 103 8 chr4 58237581 58237707 -144090640 - L1ME4a LINE L1 -6 6115 5978 454 176 59 96 chr4 58237861 58237971 -144090376 + L1MC5 LINE L1 6997 7103 -858 2326 118 0 3 chr4 58237971 58238284 -144090063 - AluSx SINE Alu 0 312 1 454 176 59 96 chr4 58238284 58238309 -144090038 + L1MC5 LINE L1 7103 7127 -834 3375 193 46 53 chr4 58238530 58238827 -144089520 + L1ME1 LINE L1 5187 5484 -682 1384 167 114 11 chr4 58238827 58239108 -144089239 - AluSx SINE Alu -2 310 1 3375 193 46 53 chr4 58239108 58239732 -144088615 + L1ME1 LINE L1 5484 6094 -72 426 213 21 0 chr4 58239769 58239863 -144088484 + L1ME1 LINE L1 6066 6161 -5 2366 238 43 67 chr4 58240149 58241108 -144087239 + L1MC5 LINE L1 6619 7530 -431 1073 165 30 12 chr4 58241223 58241550 -144086797 + MLT1B LTR MaLR 3 386 -4 376 281 42 18 chr4 58241564 58241731 -144086616 + L1ME3A LINE L1 5993 6163 -7 282 286 60 15 chr4 58241734 58241867 -144086480 - L2 LINE L2 -654 2660 2522 481 212 41 27 chr4 58241913 58242059 -144086288 + L1MC5 LINE L1 7783 7930 -31 258 239 0 0 chr4 58243096 58243142 -144085205 + L1M4 LINE L1 5431 5476 -708 858 134 0 28 chr4 58243419 58243561 -144084786 + FLAM_C SINE Alu 6 143 0 552 315 126 23 chr4 58244015 58244364 -144083983 + MLT1J LTR MaLR 6 390 -121 336 209 278 0 chr4 58244503 58244618 -144083729 - MER5A DNA MER1_type -19 170 24 684 152 123 0 chr4 58244640 58244778 -144083569 + AluJo SINE Alu 66 220 -92 226 314 43 0 chr4 58245324 58245394 -144082953 - MIR SINE MIR -80 182 110 320 222 206 0 chr4 58247062 58247188 -144081159 - MIR SINE MIR -1 261 110 44984 42 1 1 chr4 58247312 58253471 -144074876 - L1PA3 LINE L1 0 6155 1 2203 139 0 0 chr4 58253909 58254212 -144074135 + AluSx SINE Alu 1 303 -9 309 212 24 6 chr4 58254219 58254301 -144074046 + MIR3 SINE MIR 87 157 -51 211 273 76 15 chr4 58254479 58254545 -144073802 + L2 LINE L2 3231 3300 -13 400 289 150 14 chr4 58254717 58255054 -144073293 + L1MC/D LINE L1 5362 5765 -356 397 332 40 20 chr4 58255239 58255438 -144072909 - MLT1I LTR MaLR -191 218 16 291 215 0 0 chr4 58255469 58255534 -144072813 + L1MC/D LINE L1 5780 5844 -1964 22 35 0 0 chr4 58255591 58255620 -144072727 + AT_rich Low_complexity Low_complexity 1 29 0 236 327 167 20 chr4 58256052 58256358 -144071989 - LTR16A LTR ERVL -76 374 24 226 265 0 0 chr4 58256469 58256518 -144071829 + L2 LINE L2 3224 3272 0 371 250 134 87 chr4 58257002 58257099 -144071248 - MER5A DNA MER1_type 0 189 79 2004 139 20 0 chr4 58257099 58257401 -144070946 - AluSx SINE Alu -4 308 1 371 250 134 87 chr4 58257401 58257475 -144070872 - MER5A DNA MER1_type -110 79 10 269 318 111 21 chr4 58257573 58257762 -144070585 - MIR SINE MIR -44 218 13 2876 0 0 0 chr4 58258667 58258967 -144069380 + AluYa5 SINE Alu 1 300 -11 367 306 9 0 chr4 58259117 58259225 -144069122 - MER91A DNA MER1_type -83 113 5 863 234 49 78 chr4 58260194 58260502 -144067845 - MER102b DNA MER1_type -14 327 29 192 77 0 0 chr4 58261812 58261838 -144066509 + (ATG)n Simple_repeat Simple_repeat 2 27 0 569 241 106 12 chr4 58261838 58262008 -144066339 - MIR SINE MIR 0 262 77 280 254 7 87 chr4 58263773 58263911 -144064436 - MIR SINE MIR -87 175 49 312 242 33 22 chr4 58264940 58265031 -144063316 - MER94 DNA DNA -42 92 1 400 226 25 27 chr4 58265280 58265411 -144062936 - MIR SINE MIR -66 142 7 368 267 48 20 chr4 58266587 58266733 -144061614 - MIR SINE MIR -73 189 40 303 259 175 35 chr4 58266783 58266926 -144061421 - MER5A DNA MER1_type -6 183 21 541 178 12 104 chr4 58266937 58267100 -144061247 - MER58C DNA MER1_type -1 214 67 310 217 175 54 chr4 58268257 58268423 -144059924 - MER5A DNA MER1_type 0 189 4 367 322 71 6 chr4 58269239 58269422 -144058925 - MIR SINE MIR -5 257 63 859 256 139 76 chr4 58269602 58270024 -144058323 + MLT1L LTR MaLR 30 495 -120 1800 173 0 20 chr4 58270024 58270325 -144058022 + AluJb SINE Alu 5 299 -13 859 256 139 76 chr4 58270325 58270440 -144057907 + MLT1L LTR MaLR 495 601 -14 1890 193 68 52 chr4 58270728 58271225 -144057122 + MLT1D LTR MaLR 1 505 0 407 311 52 20 chr4 58271266 58271514 -144056833 + MIR SINE MIR 5 260 -2 1497 244 88 0 chr4 58271721 58272130 -144056217 - LTR16C LTR ERVL -14 477 33 266 323 16 31 chr4 58272202 58272329 -144056018 + MIR SINE MIR 137 261 -1 644 86 0 0 chr4 58274242 58274335 -144054012 + L1MB2 LINE L1 6076 6168 -3 219 352 23 0 chr4 58274512 58274600 -144053747 - L2 LINE L2 -21 3251 3162 718 174 0 45 chr4 58274650 58274782 -144053565 + FLAM_C SINE Alu 2 127 -16 620 235 133 0 chr4 58275238 58275404 -144052943 - MIR SINE MIR -32 230 43 1661 132 101 4 chr4 58275419 58275676 -144052671 + AluJb SINE Alu 1 282 -30 264 250 88 0 chr4 58275676 58275744 -144052603 - MIR SINE MIR -108 154 81 434 174 70 0 chr4 58276042 58276128 -144052219 - L2 LINE L2 0 3313 3222 448 330 71 6 chr4 58276261 58276443 -144051904 - MER91A DNA MER1_type 0 196 3 494 277 24 108 chr4 58277132 58277381 -144050966 + L2 LINE L2 3044 3271 -1 270 81 0 0 chr4 58277555 58277592 -144050755 + (TCCA)n Simple_repeat Simple_repeat 4 40 0 318 265 103 17 chr4 58277603 58277720 -144050627 - L2 LINE L2 -19 3294 3168 344 298 56 37 chr4 58277800 58277961 -144050386 + MIR SINE MIR 2 165 -97 307 213 43 0 chr4 58278883 58278977 -144049370 + (CATA)n Simple_repeat Simple_repeat 4 101 0 1628 213 57 37 chr4 58279484 58279996 -144048351 + Charlie1b DNA MER1_type 1 522 -1 216 158 0 0 chr4 58281330 58281368 -144046979 + A-rich Low_complexity Low_complexity 1 38 0 1407 156 19 51 chr4 58281852 58282135 -144046212 - AluJo SINE Alu 0 309 35 704 320 17 4 chr4 58282245 58282476 -144045871 + MIR SINE MIR 28 261 -1 21 71 0 0 chr4 58282629 58282671 -144045676 + AT_rich Low_complexity Low_complexity 1 42 0 472 274 42 9 chr4 58282820 58283032 -144045315 - MER113 DNA MER1_type? -256 265 47 330 362 69 11 chr4 58283445 58283721 -144044626 - L1M4 LINE L1 -3437 2709 2418 22 0 0 0 chr4 58283989 58284011 -144044336 + AT_rich Low_complexity Low_complexity 1 22 0 2072 133 3 0 chr4 58284093 58284387 -144043960 + AluSx SINE Alu 1 295 -17 236 333 29 43 chr4 58284618 58284756 -144043591 - L2 LINE L2 -213 3059 2924 206 312 101 29 chr4 58285450 58285588 -144042759 - L2 LINE L2 0 3272 3125 715 279 22 22 chr4 58285704 58285930 -144042417 - MIR SINE MIR -33 229 4 390 278 28 21 chr4 58286013 58286157 -144042190 - MIR SINE MIR 0 262 118 213 276 35 0 chr4 58286632 58286690 -144041657 + MER91A DNA MER1_type 127 186 -10 644 194 28 0 chr4 58287165 58287308 -144041039 - MER20B DNA MER1_type -6 777 631 323 93 0 0 chr4 58287308 58287351 -144040996 + MADE1 DNA Mariner 1 43 -37 * 1317 278 16 24 chr4 58287350 58287800 -144040547 - MER20B DNA MER1_type -137 646 201 188 339 0 0 chr4 58288024 58288083 -144040264 - L2 LINE L2 0 3272 3214 2007 132 0 0 chr4 58288220 58288507 -144039840 + AluSq SINE Alu 19 305 -8 214 171 0 0 chr4 58289173 58289208 -144039139 + GA-rich Low_complexity Low_complexity 3 37 0 609 43 21 21 chr4 58289331 58289425 -144038922 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 483 274 13 39 chr4 58289997 58290150 -144038197 + L3b LINE CR1 1112 1260 -323 375 236 133 25 chr4 58291164 58291367 -144036980 + L1ME4a LINE L1 5895 6119 -2 1712 171 3 17 chr4 58291429 58291728 -144036619 - AluJo SINE Alu -12 300 6 641 134 0 0 chr4 58292817 58292914 -144035433 - L1MB5 LINE L1 -6 6168 6072 1386 128 50 37 chr4 58292914 58293156 -144035191 + MSTA LTR MaLR 2 246 -182 479 329 23 51 chr4 58293544 58293894 -144034453 + LTR16C LTR ERVL 152 491 0 400 280 61 18 chr4 58293929 58294076 -144034271 - MIR SINE MIR -58 150 11 896 279 17 0 chr4 58294260 58294500 -144033847 - MIR SINE MIR -1 261 18 392 185 76 42 chr4 58294670 58294789 -144033558 - Charlie8 DNA MER1_type -2251 166 44 443 224 75 34 chr4 58295186 58295333 -144033014 - L1ME4a LINE L1 -6 6115 5963 27 49 0 0 chr4 58295570 58295611 -144032736 + AT_rich Low_complexity Low_complexity 1 41 0 2111 109 0 3 chr4 58295823 58296128 -144032219 - AluSx SINE Alu 0 304 1 362 330 45 10 chr4 58296505 58296705 -144031642 + MLT1L LTR MaLR 409 615 0 204 313 62 12 chr4 58297362 58297442 -144030905 - L3 LINE CR1 -592 985 902 1241 229 53 0 chr4 58297628 58297929 -144030418 + L1ME2 LINE L1 5839 6155 -9 607 263 80 32 chr4 58297974 58298286 -144030061 + L1MC4a LINE L1 5769 6095 -1713 2008 127 27 0 chr4 58298322 58298614 -144029733 + AluSx SINE Alu 2 301 -11 4323 119 24 15 chr4 58298820 58299483 -144028864 - Tigger4(Zombi) DNA MER2_type 0 2731 2063 1143 122 61 0 chr4 58299479 58299659 -144028688 - Tigger4(Zombi) DNA MER2_type -2540 191 1 * 2234 112 0 0 chr4 58299956 58300251 -144028096 + AluSx SINE Alu 1 295 -17 21 36 0 0 chr4 58300522 58300550 -144027797 + AT_rich Low_complexity Low_complexity 1 28 0 207 69 0 0 chr4 58301921 58301950 -144026397 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 609 209 13 57 chr4 58302201 58302359 -144025988 + L2 LINE L2 3163 3313 0 1180 132 22 0 chr4 58302657 58302839 -144025508 - AluSp SINE Alu -8 305 120 557 320 101 5 chr4 58303481 58303700 -144024647 - MIR SINE MIR -21 241 2 343 354 39 0 chr4 58304177 58304304 -144024043 + MIR SINE MIR 19 150 -112 326 157 0 0 chr4 58304327 58304378 -144023969 - MER50 LTR ERV1 -23 711 661 3937 148 10 7 chr4 58304917 58305526 -144022821 - MER50 LTR ERV1 -123 611 1 272 284 51 54 chr4 58305867 58306091 -144022256 + L3 LINE CR1 1250 1527 -50 345 265 68 34 chr4 58306153 58306300 -144022047 - MIR SINE MIR -60 202 51 30 59 0 0 chr4 58306526 58306577 -144021770 + AT_rich Low_complexity Low_complexity 1 51 0 300 310 11 0 chr4 58307072 58307159 -144021188 + MIR SINE MIR 60 147 -115 293 266 44 18 chr4 58307924 58308037 -144020310 - MIR SINE MIR 0 262 147 2292 93 7 3 chr4 58308353 58308654 -144019693 - AluSx SINE Alu -10 302 1 27 0 0 0 chr4 58310092 58310119 -144018228 + AT_rich Low_complexity Low_complexity 1 27 0 291 344 41 25 chr4 58310325 58310447 -144017900 - L2 LINE L2 -1 3271 3148 2343 60 11 0 chr4 58311293 58311577 -144016770 + L1PA13 LINE L1 5877 6163 0 1507 136 20 99 chr4 58311615 58311967 -144016380 + MER33 DNA MER1_type 1 324 0 334 304 78 106 chr4 58312161 58312802 -144015545 - L2 LINE L2 -78 3235 2578 2091 108 0 54 chr4 58312802 58313117 -144015230 + AluSx SINE Alu 1 298 -14 334 304 78 106 chr4 58313117 58313329 -144015018 - L2 LINE L2 -735 2578 1751 809 169 0 22 chr4 58313556 58313692 -144014655 + FLAM_C SINE Alu 1 133 0 328 272 34 30 chr4 58314045 58314231 -144014116 + L1M3 LINE L1 5319 5506 -665 274 310 10 10 chr4 58314246 58314346 -144014001 - LTR16A LTR ERVL -15 435 336 1146 153 23 10 chr4 58314380 58314629 -144013718 - L1M2 LINE L1 -743 5403 5218 5384 109 50 14 chr4 58314629 58315463 -144012884 + L1MA9 LINE L1 5445 6312 0 883 173 6 6 chr4 58315781 58315937 -144012410 - L1MA10 LINE L1 -16 6318 6163 704 144 106 31 chr4 58315942 58316102 -144012245 - MER96B DNA MER1_type? -245 172 1 2207 110 3 0 chr4 58316274 58316564 -144011783 + AluSq SINE Alu 1 291 -22 813 119 17 0 chr4 58316568 58316686 -144011661 + AluSg1 SINE Alu 1 120 -189 1490 97 10 0 chr4 58316692 58316888 -144011459 + MER57-int LTR ERV1 6940 7137 -400 1044 121 0 0 chr4 58316888 58317071 -144011276 + AluSg/x SINE Alu 144 326 0 2917 141 21 0 chr4 58317185 58317610 -144010737 - MER57B LTR ERV1 0 434 1 12690 94 113 61 chr4 58317612 58319729 -144008618 - MER57B-int LTR ERV1 -2 7535 5309 5972 149 51 35 chr4 58319734 58320732 -144007615 - MER57B-int LTR ERV1 -1702 3313 2586 2080 115 4 0 chr4 58320732 58321062 -144007285 - AluSg SINE Alu 0 331 1 5972 149 51 35 chr4 58321062 58321490 -144006857 - MER57B-int LTR ERV1 -2429 2586 2166 1423 113 42 21 chr4 58321464 58321704 -144006643 - MER57B-int LTR ERV1 -3957 3580 3336 * 307 146 55 0 chr4 58321681 58321736 -144006611 - MER57B-int LTR ERV1 -3722 2224 2167 * 2042 155 59 6 chr4 58321732 58322247 -144006100 - MER57B-int LTR ERV1 -3929 2017 1371 * 3432 142 42 7 chr4 58322237 58322974 -144005373 - MER57B-int LTR ERV1 -4810 1136 288 2013 141 18 7 chr4 58322971 58323556 -144004791 - MER57B-int LTR ERV1 -6865 672 1 * 2885 121 48 0 chr4 58323556 58323970 -144004377 - MER57B LTR ERV1 0 434 1 2362 79 0 0 chr4 58324337 58324627 -144003720 + AluY SINE Alu 5 294 -17 281 286 181 29 chr4 58325558 58325768 -144002579 + L2 LINE L2 2662 2903 -411 2359 204 18 63 chr4 58325919 58326169 -144002178 + LTR40a LTR ERVL 1 216 -303 2156 131 0 6 chr4 58326169 58326482 -144001865 + L1PA13 LINE L1 5848 6158 -5 2359 204 18 63 chr4 58326482 58326774 -144001573 + LTR40a LTR ERVL 216 519 0 513 259 14 0 chr4 58326775 58326918 -144001429 + L1MC4 LINE L1 7753 7897 -145 1637 248 38 61 chr4 58327027 58327716 -144000631 - L1MC4 LINE L1 -723 7238 6565 260 139 23 0 chr4 58327981 58328024 -144000323 + MER81 DNA DNA 70 113 -1 253 283 153 35 chr4 58328061 58328375 -143999972 - L1MC4a LINE L1 -1564 6244 5894 1957 125 0 4 chr4 58328388 58328709 -143999638 - AluSg SINE Alu 0 320 1 2048 115 0 14 chr4 58329239 58329557 -143998790 + AluSx SINE Alu 1 314 0 520 278 53 74 chr4 58330061 58330239 -143998108 + MIR SINE MIR 8 179 -68 529 205 97 151 chr4 58330243 58330367 -143997980 + MLT1C LTR MaLR 1 130 -337 1520 172 19 0 chr4 58330367 58330635 -143997712 - AluJb SINE Alu -14 298 26 529 205 97 151 chr4 58330635 58330841 -143997506 + MLT1C LTR MaLR 130 313 -154 196 171 0 49 chr4 58330845 58330886 -143997461 + L2 LINE L2 3179 3217 -96 2065 112 11 0 chr4 58331888 58332165 -143996182 + AluSx SINE Alu 1 280 -32 195 42 0 0 chr4 58332167 58332191 -143996156 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 234 282 0 28 chr4 58332514 58332585 -143995762 + MIR3 SINE MIR 125 193 -15 572 287 19 34 chr4 58334089 58334298 -143994049 - MIR SINE MIR -6 256 51 205 204 56 0 chr4 58334405 58334459 -143993888 + MIR SINE MIR 174 230 -32 2898 7 0 0 chr4 58334647 58334957 -143993390 + AluYa8 SINE Alu 1 310 0 1814 180 71 52 chr4 58334973 58335340 -143993007 + MLT1A2 LTR MaLR 1 374 0 22 0 0 0 chr4 58335690 58335712 -143992635 + AT_rich Low_complexity Low_complexity 1 22 0 203 309 89 32 chr4 58336438 58336561 -143991786 - MIR SINE MIR -63 145 16 1742 150 78 40 chr4 58336937 58337071 -143991276 + MLT1A1 LTR MaLR 2 130 -235 2334 106 0 0 chr4 58337071 58337373 -143990974 + AluSx SINE Alu 1 302 -10 1742 150 78 40 chr4 58337373 58337584 -143990763 + MLT1A1 LTR MaLR 130 360 -5 4953 199 23 15 chr4 58337907 58338892 -143989455 + MER45B DNA AcHobo 4 996 -44 27 0 0 0 chr4 58339155 58339182 -143989165 + AT_rich Low_complexity Low_complexity 1 27 0 2509 141 15 7 chr4 58339234 58339639 -143988708 - L1MB7 LINE L1 -19 6165 5758 1327 222 3 48 chr4 58339680 58339995 -143988352 - AluJb SINE Alu -11 301 1 2203 99 0 45 chr4 58340031 58340343 -143988004 + AluSq SINE Alu 1 298 -15 600 286 63 17 chr4 58340344 58340694 -143987653 - HAL1 LINE L1 -72 2435 2070 1928 257 105 27 chr4 58340705 58340874 -143987473 + L2 LINE L2 2095 2249 -1064 873 44 0 9 chr4 58340874 58340988 -143987359 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2172 102 0 0 chr4 58340988 58341271 -143987076 - AluSq SINE Alu -1 396 1 1928 257 105 27 chr4 58341271 58342227 -143986120 + L2 LINE L2 2248 3313 0 201 74 0 0 chr4 58342572 58342599 -143985748 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 357 241 37 0 chr4 58342697 58342805 -143985542 - L3b LINE CR1 -229 1354 1243 2126 133 0 7 chr4 58343127 58343436 -143984911 - AluSx SINE Alu 0 312 6 2269 119 0 6 chr4 58343487 58343799 -143984548 - AluSx SINE Alu 0 312 3 4677 140 49 77 chr4 58344999 58345367 -143982980 - MER21A LTR ERV1 0 931 554 753 138 0 16 chr4 58345367 58345511 -143982836 - FLAM_C SINE Alu 0 142 1 4677 140 49 77 chr4 58345511 58346099 -143982248 - MER21A LTR ERV1 -377 554 1 192 243 0 0 chr4 58346363 58346400 -143981947 + MIR SINE MIR 60 96 -112 561 301 60 12 chr4 58346607 58346856 -143981491 - MIR SINE MIR 0 262 2 847 215 123 5 chr4 58346946 58347165 -143981182 - MIR SINE MIR -3 259 15 200 184 0 61 chr4 58347237 58347286 -143981061 + MIR SINE MIR 66 111 -97 1683 187 20 7 chr4 58347363 58347668 -143980679 - AluJb SINE Alu -1 311 3 1796 130 48 0 chr4 58348082 58348406 -143979941 - AluSx SINE Alu 0 337 1 2122 181 138 2 chr4 58349145 58349587 -143978760 - MLT1D LTR MaLR -3 502 1 183 333 133 7 chr4 58349625 58349775 -143978572 + MIR SINE MIR 73 241 -21 606 301 120 16 chr4 58349856 58350262 -143978085 - LTR16A LTR ERVL 0 450 1 328 271 172 0 chr4 58350374 58350496 -143977851 + MIR SINE MIR 46 188 -74 3543 118 80 83 chr4 58350718 58351983 -143976364 + pTR5 LTR ERV1 732 2438 0 337 274 18 4 chr4 58351986 58352135 -143976212 + MIR SINE MIR 18 240 -22 2362 109 0 3 chr4 58352617 58352929 -143975418 + AluSx SINE Alu 1 311 -1 23 0 0 0 chr4 58353481 58353504 -143974843 + AT_rich Low_complexity Low_complexity 1 23 0 492 330 112 33 chr4 58353844 58354572 -143973775 + L2 LINE L2 2529 3312 -1 27 0 0 0 chr4 58354622 58354649 -143973698 + AT_rich Low_complexity Low_complexity 1 27 0 1704 189 3 10 chr4 58354654 58354961 -143973386 - AluJo SINE Alu -7 305 1 248 254 55 0 chr4 58355115 58355170 -143973177 + L2 LINE L2 3229 3286 -27 633 269 82 12 chr4 58355265 58355510 -143972837 + Charlie8 DNA MER1_type 2 263 -2154 189 107 0 0 chr4 58356027 58356055 -143972292 + (CAT)n Simple_repeat Simple_repeat 3 30 0 231 340 107 10 chr4 58356866 58356969 -143971378 - MER5A DNA MER1_type -23 166 54 271 296 128 16 chr4 58357187 58357274 -143971073 + MIR3 SINE MIR 30 137 -71 1512 206 82 90 chr4 58357274 58357809 -143970538 - LTR26B LTR ERV1 0 531 1 271 296 128 16 chr4 58357809 58357846 -143970501 + MIR3 SINE MIR 137 168 -40 540 289 60 69 chr4 58357853 58358171 -143970176 + MER102b DNA MER1_type 5 319 -22 2246 96 0 0 chr4 58358359 58358650 -143969697 + AluSc SINE Alu 1 291 -18 2424 86 0 10 chr4 58359367 58359681 -143968666 - AluY SINE Alu 0 311 1 206 344 8 69 chr4 58359897 58360060 -143968287 - L2 LINE L2 -439 2875 2730 1713 193 0 10 chr4 58360060 58360361 -143967986 - AluJo SINE Alu -12 300 3 206 344 8 69 chr4 58360361 58360444 -143967903 - L2 LINE L2 -584 2730 2644 23 54 0 0 chr4 58360641 58360678 -143967669 + AT_rich Low_complexity Low_complexity 1 37 0 469 301 47 21 chr4 58361751 58361944 -143966403 + MIR SINE MIR 10 207 -55 1202 146 9 52 chr4 58361944 58362156 -143966191 - MER20 DNA MER1_type 0 219 17 233 253 107 0 chr4 58362922 58362997 -143965350 - L2 LINE L2 -1 3312 3230 2342 106 0 0 chr4 58363721 58364024 -143964323 - AluSq SINE Alu -10 303 1 946 181 5 27 chr4 58364793 58364981 -143963366 - MIR SINE MIR -12 250 67 2008 119 3 72 chr4 58365102 58365437 -143962910 - AluSx SINE Alu 0 312 1 328 203 31 70 chr4 58365461 58365589 -143962758 - MIR3 SINE MIR -2 206 84 869 193 81 72 chr4 58365698 58366030 -143962317 - L1MC5 LINE L1 -46 7915 7581 648 0 0 0 chr4 58366226 58366298 -143962049 + (CTATT)n Simple_repeat Simple_repeat 4 75 0 2383 99 3 0 chr4 58366298 58366601 -143961746 - AluSq SINE Alu -9 304 1 261 0 0 0 chr4 58366603 58366632 -143961715 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 674 184 0 0 chr4 58366633 58366736 -143961611 - FLAM_A SINE Alu -27 115 13 719 289 14 0 chr4 58366741 58366959 -143961388 + MIR SINE MIR 42 262 0 2330 104 7 0 chr4 58367143 58367450 -143960897 - AluSg SINE Alu -1 309 1 325 224 0 0 chr4 58367706 58367764 -143960583 - MER94 DNA DNA -76 58 1 2262 118 0 0 chr4 58368043 58368339 -143960008 + AluSg SINE Alu 11 306 -4 2169 99 3 26 chr4 58368537 58368873 -143959474 + AluSp SINE Alu 1 313 0 257 133 0 0 chr4 58369688 58369733 -143958614 - AluJo SINE Alu 0 302 258 1230 181 5 0 chr4 58369736 58369935 -143958412 - AluJo SINE Alu -107 205 6 540 227 0 0 chr4 58370291 58370401 -143957946 + MIR SINE MIR 108 217 -45 247 286 0 0 chr4 58370450 58370520 -143957827 + L2 LINE L2 1932 2001 -1313 2101 138 3 0 chr4 58370586 58370883 -143957464 - AluSx SINE Alu -14 298 1 2014 138 23 7 chr4 58371069 58371373 -143956974 + AluJo SINE Alu 1 309 -3 2245 73 55 14 chr4 58371376 58371665 -143956682 + AluY SINE Alu 1 301 -10 243 353 85 33 chr4 58371813 58372493 -143955854 + L2 LINE L2 2549 3267 -5 915 224 146 48 chr4 58372657 58373135 -143955212 + L1ME4a LINE L1 5592 6116 -5 900 259 85 92 chr4 58373195 58373748 -143954599 + MLT1K LTR MaLR 36 584 -4 281 146 21 0 chr4 58373847 58373895 -143954452 - MER3 DNA MER1_type -160 49 1 244 299 215 0 chr4 58374247 58374354 -143953993 + L2 LINE L2 3138 3267 -5 310 321 7 58 chr4 58374757 58374894 -143953453 + L2 LINE L2 3143 3272 0 320 213 83 28 chr4 58378993 58379101 -143949246 - MIR SINE MIR -28 234 121 296 221 15 0 chr4 58379204 58379272 -143949075 - L2 LINE L2 -4 3309 3241 337 258 84 52 chr4 58380323 58380478 -143947869 + Charlie8 DNA MER1_type 2 161 -2256 369 206 29 5 chr4 58380720 58380858 -143947489 + MIR SINE MIR 58 262 0 2309 107 0 0 chr4 58380947 58381247 -143947100 - AluSx SINE Alu -12 300 1 708 258 62 18 chr4 58381574 58381799 -143946548 + MIR SINE MIR 5 239 -23 1546 138 97 26 chr4 58382951 58383266 -143945081 - AluJo SINE Alu 0 312 1 2310 171 100 2 chr4 58383275 58383724 -143944623 - L1MB2 LINE L1 0 6171 5679 403 257 15 29 chr4 58384428 58384564 -143943783 + L3b LINE CR1 1126 1259 -324 2404 61 0 0 chr4 58384636 58384955 -143943392 - AluSc SINE Alu 0 320 2 250 284 0 40 chr4 58387964 58388038 -143940309 - L2 LINE L2 -56 3257 3187 1185 153 141 4 chr4 58388897 58389325 -143939022 + MER39 LTR ERV1 1 549 -158 1102 239 186 19 chr4 58390154 58390693 -143937654 - L1MC5 LINE L1 -34 7927 7299 264 297 65 26 chr4 58391020 58391175 -143937172 - HAL1b LINE L1 -515 833 673 258 286 112 90 chr4 58391263 58391718 -143936629 - HAL1b LINE L1 -804 544 80 195 42 0 0 chr4 58392191 58392215 -143936132 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1645 110 0 5 chr4 58392230 58392449 -143935898 - AluSx SINE Alu -94 218 1 1134 128 33 6 chr4 58394544 58394724 -143933623 + MER5A DNA MER1_type 5 189 0 228 323 85 71 chr4 58394986 58395526 -143932821 + L2 LINE L2 2688 3272 0 240 255 0 0 chr4 58395612 58395663 -143932684 + C-rich Low_complexity Low_complexity 3 53 0 657 69 0 0 chr4 58396669 58396756 -143931591 + (TTCC)n Simple_repeat Simple_repeat 1 87 0 218 277 61 46 chr4 58396914 58397060 -143931287 - MIR3 SINE MIR -70 138 10 728 151 190 0 chr4 58397154 58397325 -143931022 - L1MD3 LINE L1 -1 8039 7849 2424 158 32 2 chr4 58398155 58398565 -143929782 + L1MB4 LINE L1 5757 6178 -2 209 294 0 0 chr4 58398591 58398642 -143929705 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 2277 88 3 10 chr4 58398764 58399070 -143929277 - AluSq SINE Alu -9 304 1 1137 118 0 0 chr4 58400136 58400289 -143928058 + AluSq SINE Alu 1 153 -160 564 99 49 0 chr4 58400289 58400370 -143927977 + AluSg/x SINE Alu 215 299 -11 201 250 67 0 chr4 58400414 58400464 -143927883 - L2 LINE L2 0 3272 3216 1958 159 7 0 chr4 58400464 58400766 -143927581 - AluJb SINE Alu -8 304 1 2005 145 13 13 chr4 58400796 58401107 -143927240 - AluSx SINE Alu -1 311 1 2161 123 0 3 chr4 58401128 58401429 -143926918 - AluSx SINE Alu -12 300 1 358 204 63 33 chr4 58401444 58401568 -143926779 - L1MA4 LINE L1 -38 6264 6134 232 293 0 17 chr4 58401580 58401638 -143926709 - MIR SINE MIR -60 148 92 896 110 16 0 chr4 58401732 58401859 -143926488 + BC200 scRNA scRNA 1 129 -71 234 0 0 0 chr4 58402550 58402576 -143925771 + (GGGTG)n Simple_repeat Simple_repeat 5 30 0 420 39 0 0 chr4 58403372 58403423 -143924924 - MADE1 DNA Mariner -27 53 3 199 309 135 16 chr4 58403713 58404017 -143924330 + L2 LINE L2 2394 2733 -581 1866 175 0 0 chr4 58404925 58405222 -143923125 - AluJb SINE Alu -15 297 1 1871 126 0 11 chr4 58405568 58405838 -143922509 + AluSx SINE Alu 36 302 -10 2294 149 37 77 chr4 58408078 58408621 -143919726 - L1MB4 LINE L1 -3 6177 5657 209 238 0 0 chr4 58409052 58409094 -143919253 - L2 LINE L2 -8 3264 3223 24 0 0 0 chr4 58409358 58409382 -143918965 + AT_rich Low_complexity Low_complexity 1 24 0 795 208 149 27 chr4 58410399 58410620 -143917727 - MIR SINE MIR -8 254 7 584 198 62 28 chr4 58410659 58410820 -143917527 - MIR SINE MIR -28 234 69 1598 146 0 94 chr4 58412727 58413057 -143915290 - AluJo SINE Alu -13 299 1 310 278 22 0 chr4 58415862 58415952 -143912395 - MER94 DNA DNA -14 120 29 520 284 70 25 chr4 58416296 58416497 -143911850 + MIR SINE MIR 47 256 -6 215 304 18 0 chr4 58418758 58418814 -143909533 - L2 LINE L2 -3 3310 3254 260 298 84 53 chr4 58420316 58420447 -143907900 - MIR3 SINE MIR -12 196 62 1321 182 52 0 chr4 58420577 58420863 -143907484 - MER33 DNA MER1_type 0 324 24 266 246 0 0 chr4 58421278 58421339 -143907008 - L1ME4a LINE L1 0 6121 6061 23 0 0 0 chr4 58421652 58421675 -143906672 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 58423021 58423043 -143905304 + AT_rich Low_complexity Low_complexity 1 22 0 530 235 27 17 chr4 58423819 58423985 -143904362 - L1MA9 LINE L1 -38 6274 6118 1980 132 7 0 chr4 58423985 58424273 -143904074 + AluJb SINE Alu 11 300 -12 530 235 27 17 chr4 58424273 58424289 -143904058 - L1MA9 LINE L1 -194 6118 6104 244 239 84 14 chr4 58424290 58424361 -143903986 + MIR SINE MIR 183 258 -4 234 154 0 0 chr4 58425863 58425904 -143902443 + MIR SINE MIR 107 147 -61 593 237 44 46 chr4 58426149 58426361 -143901986 - MIR SINE MIR -19 243 31 517 204 125 0 chr4 58426671 58426823 -143901524 - LTR16A1 LTR ERVL -16 441 271 1938 137 13 7 chr4 58428913 58429213 -143899134 - AluSx SINE Alu -10 302 1 1516 189 36 4 chr4 58429278 58429553 -143898794 - AluJo SINE Alu -28 284 1 333 234 72 27 chr4 58429759 58429870 -143898477 + MER103 DNA DNA 44 159 -7 2152 111 0 23 chr4 58430012 58430319 -143898028 + AluSx SINE Alu 1 300 -12 998 237 81 20 chr4 58430487 58430782 -143897565 - MER5C DNA MER1_type -3 321 9 1495 121 14 0 chr4 58431492 58431707 -143896640 - L1PB2 LINE L1 -3 6148 5931 2032 164 68 36 chr4 58433718 58434133 -143894214 - MSTB1 LTR MaLR -4 428 1 24 0 0 0 chr4 58434883 58434907 -143893440 + AT_rich Low_complexity Low_complexity 1 24 0 1161 214 64 70 chr4 58436411 58436460 -143891887 + MER58B DNA MER1_type 1 49 -2371 1929 128 66 0 chr4 58436460 58436749 -143891598 - AluSg SINE Alu -2 308 1 1161 214 64 70 chr4 58436749 58437041 -143891306 + MER58B DNA MER1_type 49 340 -1 561 255 137 0 chr4 58438329 58438482 -143889865 - MER96 DNA MER1_type -1 174 1 245 313 94 31 chr4 58438482 58438578 -143889769 - MER5A DNA MER1_type -25 164 63 * 266 366 65 0 chr4 58438504 58438627 -143889720 + MER5A DNA MER1_type 59 189 0 317 234 45 36 chr4 58438936 58439047 -143889300 - L1ME4a LINE L1 -45 6076 5965 322 268 115 84 chr4 58439420 58439681 -143888666 - L2 LINE L2 -1 3271 3003 1905 116 32 18 chr4 58440375 58440659 -143887688 - AluSx SINE Alu -23 289 2 594 299 51 0 chr4 58440662 58440859 -143887488 - MIR SINE MIR 0 262 56 311 262 26 0 chr4 58441175 58441270 -143887077 - L1MC4 LINE L1 -1339 6703 6614 220 273 0 0 chr4 58441776 58441831 -143886516 - L3 LINE CR1 -216 1361 1307 270 274 179 28 chr4 58442916 58443022 -143885325 - L2 LINE L2 -3 3310 3189 1503 92 60 0 chr4 58443022 58443239 -143885108 + MER30 DNA MER1_type 1 230 0 2263 85 0 0 chr4 58443470 58443772 -143884575 - AluSx SINE Alu 0 302 1 253 252 90 36 chr4 58443860 58443971 -143884376 - MIR SINE MIR -27 235 119 24 77 0 0 chr4 58444748 58444800 -143883547 + AT_rich Low_complexity Low_complexity 1 52 0 357 183 43 11 chr4 58445153 58445246 -143883101 - L1ME4a LINE L1 0 6121 6026 180 269 19 0 chr4 58450112 58450164 -143878183 - L3 LINE CR1 -978 599 547 261 75 0 0 chr4 58450399 58450439 -143877908 + (T)n Simple_repeat Simple_repeat 1 40 0 196 297 57 75 chr4 58452080 58452232 -143876115 - MIR SINE MIR -58 150 40 382 326 112 21 chr4 58452618 58452805 -143875542 + MIR SINE MIR 31 234 -28 1481 213 46 75 chr4 58453123 58453645 -143874702 - Charlie4a DNA MER1_type 0 508 2 213 39 0 0 chr4 58453736 58453762 -143874585 + (A)n Simple_repeat Simple_repeat 1 26 0 270 273 58 58 chr4 58453978 58454117 -143874230 - MIR SINE MIR -32 230 92 551 263 58 79 chr4 58454165 58454507 -143873840 - MLT1J LTR MaLR -94 417 83 184 237 42 110 chr4 58454564 58454682 -143873665 + MIR SINE MIR 103 212 -50 216 0 0 0 chr4 58458269 58458293 -143870054 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr4 58458670 58458691 -143869656 + AT_rich Low_complexity Low_complexity 1 21 0 206 254 179 104 chr4 58459769 58459903 -143868444 + MIR SINE MIR 39 182 -80 2502 141 58 16 chr4 58461423 58461871 -143866476 - MLT1C LTR MaLR 0 467 1 203 286 125 0 chr4 58462007 58462063 -143866284 + L2 LINE L2 3250 3312 -1 592 208 125 0 chr4 58462293 58462461 -143865886 - MER53 DNA DNA 0 189 1 796 250 47 54 chr4 58462579 58463168 -143865179 - L1MEd LINE L1 -4688 1622 985 494 247 12 29 chr4 58463186 58463356 -143864991 - L1MB8 LINE L1 -2 6176 6010 610 352 31 0 chr4 58463566 58463793 -143864554 - MIR SINE MIR 0 262 29 900 146 8 0 chr4 58463904 58464034 -143864313 + FLAM_C SINE Alu 1 131 -12 247 257 93 14 chr4 58465018 58465158 -143863189 + MER117 DNA MER1_type 12 162 -35 882 212 74 5 chr4 58465206 58465409 -143862938 - MIR SINE MIR -44 218 2 1912 137 67 6 chr4 58465756 58466071 -143862276 - MER1B DNA MER1_type 0 337 4 461 266 93 0 chr4 58466141 58466280 -143862067 - MIR SINE MIR -14 248 97 23 68 0 0 chr4 58466716 58466760 -143861587 + AT_rich Low_complexity Low_complexity 1 44 0 2240 132 40 19 chr4 58466898 58467322 -143861025 + LTR56 LTR ERV1 13 445 0 424 117 26 0 chr4 58467352 58467429 -143860918 + (TA)n Simple_repeat Simple_repeat 1 79 0 233 221 15 0 chr4 58467478 58467546 -143860801 - L1MB8 LINE L1 -1911 5897 5829 226 339 0 16 chr4 58468526 58468588 -143859759 + MIR SINE MIR 36 96 -112 4391 157 33 11 chr4 58468589 58468982 -143859365 + L1PB4 LINE L1 5254 5637 -519 1734 175 17 3 chr4 58468982 58469273 -143859074 + AluJb SINE Alu 1 295 -17 4391 157 33 11 chr4 58469273 58469763 -143858584 + L1PB4 LINE L1 5637 6156 0 433 111 25 0 chr4 58470953 58471034 -143857313 - L1MA10 LINE L1 0 6334 6252 180 258 48 16 chr4 58471129 58471191 -143857156 - L2 LINE L2 -1045 2269 2206 * 183 298 21 0 chr4 58471177 58471224 -143857123 + MIR SINE MIR 8 55 -207 217 324 0 15 chr4 58471333 58471401 -143856946 + L2 LINE L2 3187 3253 -19 249 239 84 14 chr4 58473096 58473167 -143855180 - MIR SINE MIR -4 258 183 1984 132 7 0 chr4 58473184 58473472 -143854875 - AluJb SINE Alu -12 300 11 475 237 10 5 chr4 58473490 58473638 -143854709 + L1MA9 LINE L1 6141 6274 -38 190 167 0 0 chr4 58476001 58476031 -143852316 + L2 LINE L2 3264 3293 -20 202 361 0 21 chr4 58476565 58476662 -143851685 + MIR SINE MIR 55 149 -59 319 332 45 82 chr4 58477300 58477544 -143850803 - L2 LINE L2 -2 3270 3036 239 163 23 0 chr4 58477543 58477586 -143850761 + L2 LINE L2 3264 3307 -6 * 808 231 67 34 chr4 58477602 58477810 -143850537 + MIR SINE MIR 26 240 -22 296 307 11 28 chr4 58478007 58478183 -143850164 + CT-rich Low_complexity Low_complexity 3 175 0 2317 55 34 3 chr4 58478215 58478508 -143849839 - AluY SINE Alu -9 302 1 467 294 84 62 chr4 58479096 58479559 -143848788 - L2 LINE L2 -63 3250 2784 588 188 8 0 chr4 58479791 58479908 -143848439 - MLT2B2 LTR ERVL -397 118 1 274 263 13 0 chr4 58480028 58480104 -143848243 - LTR67 LTR ERVL -479 78 2 1307 294 47 39 chr4 58480120 58480657 -143847690 - L2 LINE L2 -535 2779 2239 487 303 0 0 chr4 58480662 58480784 -143847563 + MIR SINE MIR 23 144 -118 1347 187 143 58 chr4 58480788 58481215 -143847132 - MLT1C LTR MaLR -2 465 3 13617 184 34 15 chr4 58481290 58486306 -143842041 - L1PB1 LINE L1 0 6867 1596 2000 147 0 3 chr4 58486306 58486605 -143841742 - AluSq SINE Alu -15 298 1 13617 184 34 15 chr4 58486605 58487313 -143841034 - L1PB1 LINE L1 -5271 1596 903 703 239 5 0 chr4 58487313 58487501 -143840846 - L1PB1 LINE L1 -6669 194 6 273 222 93 0 chr4 58487830 58487884 -143840463 + L2 LINE L2 3234 3292 -21 267 231 0 66 chr4 58488208 58488329 -143840018 - L1MC4 LINE L1 -2 8040 7928 376 227 0 0 chr4 58488551 58488639 -143839708 - L1ME3A LINE L1 -8 6162 6075 1763 265 79 31 chr4 58488654 58489530 -143838817 - L1M4 LINE L1 -1377 4769 3852 494 319 25 13 chr4 58490000 58490235 -143838112 - MLT1H1-int LTR MaLR -831 540 303 446 245 124 25 chr4 58490350 58490591 -143837756 - MLT1H1 LTR MaLR 0 555 291 1639 130 52 45 chr4 58491314 58491644 -143836703 + MER44D DNA MER2_type 8 609 0 286 312 189 16 chr4 58491704 58492107 -143836240 - L2 LINE L2 -54 3259 2790 237 215 231 0 chr4 58492106 58492171 -143836176 + MIR SINE MIR 71 150 -112 * 1834 102 83 50 chr4 58492182 58492543 -143835804 + THE1C LTR MaLR 3 375 0 1677 297 84 26 chr4 58492555 58493517 -143834830 + L2 LINE L2 2246 3313 0 472 211 0 19 chr4 58494562 58494666 -143833681 + MIR SINE MIR 15 116 -146 388 294 73 65 chr4 58494691 58494779 -143833568 - MIR SINE MIR -8 254 168 2696 45 0 0 chr4 58494779 58495090 -143833257 - AluY SINE Alu 0 311 1 388 294 73 65 chr4 58495090 58495246 -143833101 - MIR SINE MIR -94 168 8 219 333 69 10 chr4 58495257 58495359 -143832988 + MIR SINE MIR 150 257 -5 448 258 165 61 chr4 58495612 58495988 -143832359 - L2 LINE L2 -345 2969 2555 424 276 52 46 chr4 58497044 58497218 -143831129 - MIR SINE MIR -46 216 42 * 599 278 128 77 chr4 58497216 58497670 -143830677 - L2 LINE L2 -6 3307 2831 217 250 47 0 chr4 58497715 58497779 -143830568 - L2 LINE L2 -652 2662 2596 448 222 8 180 chr4 58498103 58498342 -143830005 + MIR SINE MIR 64 261 -1 1840 159 6 32 chr4 58499499 58499814 -143828533 - AluJb SINE Alu -5 307 1 2981 183 10 10 chr4 58551472 58552056 -143776291 + L1MB5 LINE L1 5581 6164 -10 344 278 66 7 chr4 58552062 58552213 -143776134 + L1MEd LINE L1 946 1105 -5014 472 304 69 26 chr4 58552255 58552601 -143775746 + L1MEd LINE L1 1198 1558 -4752 2654 152 118 30 chr4 58552677 58553211 -143775136 + L1MCa LINE L1 20 600 -5826 238 170 21 43 chr4 58553224 58553271 -143775076 + L1MCa LINE L1 573 618 -5808 2082 197 30 26 chr4 58553272 58553769 -143774578 + L1MCa LINE L1 573 1071 -5355 233 257 54 0 chr4 58554006 58554080 -143774267 + MLT1J LTR MaLR 9 86 -425 2561 114 6 0 chr4 58554083 58554441 -143773906 - THE1B LTR MaLR -4 360 1 295 321 136 6 chr4 58554704 58554866 -143773481 + MLT1I LTR MaLR 153 335 -74 1981 89 117 11 chr4 58555615 58555897 -143772450 - AluSx SINE Alu 0 312 1 237 312 101 45 chr4 58557830 58558029 -143770318 + L2 LINE L2 3004 3213 -100 254 257 72 26 chr4 58558245 58558397 -143769950 + L1MCa LINE L1 2412 2570 -3856 2049 157 62 14 chr4 58558552 58558922 -143769425 + MLT1B LTR MaLR 1 388 -2 182 200 22 22 chr4 58560071 58560161 -143768186 + CT-rich Low_complexity Low_complexity 3 92 0 5760 124 4 13 chr4 58560215 58561279 -143767068 + L1PA15 LINE L1 5104 6159 -6 660 249 68 6 chr4 58561448 58561625 -143766722 + MIR SINE MIR 20 207 -55 299 343 76 40 chr4 58563198 58563449 -143764898 - L2 LINE L2 -182 3090 2831 213 320 0 98 chr4 58563714 58563783 -143764564 + MIR SINE MIR 37 90 -118 2012 114 44 3 chr4 58563783 58564081 -143764266 + AluY SINE Alu 1 310 -1 213 320 0 98 chr4 58564081 58564133 -143764214 + MIR SINE MIR 90 146 -62 1351 203 180 18 chr4 58564319 58564708 -143763639 - MER66A LTR ERV1 -26 452 1 22 0 0 0 chr4 58564988 58565010 -143763337 + AT_rich Low_complexity Low_complexity 1 22 0 2161 138 0 3 chr4 58566202 58566513 -143761834 - AluSx SINE Alu 0 312 3 265 295 19 9 chr4 58566621 58566726 -143761621 - MER103 DNA DNA -59 107 2 581 257 71 19 chr4 58566815 58567025 -143761322 - LTR33 LTR ERVL 0 521 301 1701 163 64 16 chr4 58567062 58567436 -143760911 + MER63B DNA MER1_type 1 392 -44 216 259 35 0 chr4 58567775 58567833 -143760514 + MER5B DNA MER1_type 112 171 -7 1663 185 14 35 chr4 58568199 58568566 -143759781 - MLT1A2 LTR MaLR -15 359 1 481 167 21 0 chr4 58568872 58568968 -143759379 + MER105 DNA DNA 2 99 -105 362 163 87 33 chr4 58568968 58569060 -143759287 - MER58 DNA MER1_type 0 2420 2324 400 235 0 0 chr4 58569068 58569153 -143759194 - MER58 DNA MER1_type -242 99 15 430 367 74 17 chr4 58569605 58570008 -143758339 + L2 LINE L2 2520 2945 -369 1848 231 30 4 chr4 58570484 58570947 -143757400 - L1ME2 LINE L1 -7 6157 5683 480 252 97 48 chr4 58570927 58571300 -143757047 + L1ME4a LINE L1 5675 6065 -56 * 41 87 0 0 chr4 58571317 58571421 -143756926 + AT_rich Low_complexity Low_complexity 1 104 0 255 264 69 14 chr4 58571700 58571772 -143756575 + L2 LINE L2 3237 3312 -1 277 376 81 6 chr4 58571891 58572064 -143756283 - L2 LINE L2 -221 3051 2866 222 280 72 118 chr4 58572579 58572883 -143755464 + L2 LINE L2 2585 2874 -440 599 277 68 18 chr4 58572913 58573133 -143755214 + MIR SINE MIR 31 261 -1 1346 391 33 13 chr4 58573952 58574405 -143753942 - MLT1C LTR MaLR 0 467 6 2285 88 0 44 chr4 58575082 58575401 -143752946 - AluSg SINE Alu -5 305 1 1783 180 28 8 chr4 58575487 58575887 -143752460 + L1MC3 LINE L1 7378 7785 0 212 326 11 32 chr4 58576560 58576655 -143751692 + MIR SINE MIR 61 153 -109 1132 245 92 40 chr4 58576657 58577127 -143751220 + MLT1F1 LTR MaLR 1 521 -72 301 167 0 19 chr4 58577231 58577285 -143751062 + L2 LINE L2 3259 3311 -2 205 206 14 41 chr4 58577294 58577367 -143750980 + (TA)n Simple_repeat Simple_repeat 2 72 0 1608 160 12 50 chr4 58577607 58577926 -143750421 + AluJo SINE Alu 1 307 -5 183 240 70 62 chr4 58578865 58578994 -143749353 + MIR3 SINE MIR 2 131 -77 236 250 47 0 chr4 58579038 58579102 -143749245 - MER5A DNA MER1_type -48 141 75 944 195 33 17 chr4 58579325 58579566 -143748781 + MER33 DNA MER1_type 1 245 -79 5712 160 16 33 chr4 58579566 58580432 -143747915 - L1MA10 LINE L1 -8 6326 5491 1859 183 0 0 chr4 58580432 58580743 -143747604 - AluJo SINE Alu -1 311 1 5712 160 16 33 chr4 58580743 58581497 -143746850 - L1MA10 LINE L1 -843 5491 4726 497 112 0 61 chr4 58581501 58581599 -143746748 + MER33 DNA MER1_type 233 324 0 700 334 36 5 chr4 58581993 58582439 -143745908 + L1ME4a LINE L1 5456 5915 -206 1074 286 62 20 chr4 58584563 58585011 -143743336 + MLT1J LTR MaLR 37 503 -8 499 250 0 16 chr4 58585153 58585281 -143743066 - MIR SINE MIR -8 254 129 1264 196 36 73 chr4 58585284 58585747 -143742600 - MLT1B LTR MaLR -2 388 1 422 256 22 66 chr4 58585747 58585884 -143742463 - MIR SINE MIR -130 132 2 736 273 72 0 chr4 58586840 58587034 -143741313 - MIR SINE MIR -46 216 9 761 226 29 12 chr4 58587273 58587445 -143740902 - MIR SINE MIR -52 210 37 363 323 120 0 chr4 58588323 58588490 -143739857 + MIR SINE MIR 49 235 -27 264 372 67 18 chr4 58588892 58589115 -143739232 - L2 LINE L2 -35 3237 3004 1044 282 82 63 chr4 58589142 58589738 -143738609 - L2 LINE L2 0 3313 2695 584 256 24 0 chr4 58590117 58590242 -143738105 - MIR SINE MIR -64 144 17 331 295 79 0 chr4 58590293 58590432 -143737915 - MER20B DNA MER1_type -604 179 30 194 250 0 23 chr4 58590464 58590508 -143737839 - MIR3 SINE MIR -52 156 114 301 286 54 18 chr4 58590533 58590645 -143737702 - L2 LINE L2 -1 3312 3197 186 323 202 0 chr4 58590783 58590882 -143737465 + L3 LINE CR1 1370 1488 -89 1067 217 16 43 chr4 58591026 58591284 -143737063 + MLT1A1 LTR MaLR 115 365 0 7228 50 0 8 chr4 58591344 58592733 -143735614 - L1PA6 LINE L1 0 6154 4770 14487 64 8 1 chr4 58592733 58594737 -143733610 + L1PA6 LINE L1 2747 4764 -1382 329 235 204 8 chr4 58596072 58596204 -143732143 - L1ME4a LINE L1 -19 6102 5945 402 345 6 42 chr4 58596402 58596567 -143731780 - MER5B DNA MER1_type -13 165 7 3713 155 36 23 chr4 58596785 58597430 -143730917 - MER39B LTR ERV1 0 653 1 357 109 0 0 chr4 58597882 58597937 -143730410 + (TG)n Simple_repeat Simple_repeat 1 55 0 6084 151 18 7 chr4 58598168 58599463 -143728884 + L1PB1 LINE L1 4480 5793 -358 330 26 0 0 chr4 58599463 58599502 -143728845 + (TA)n Simple_repeat Simple_repeat 2 40 0 6084 151 18 7 chr4 58599502 58599865 -143728482 + L1PB1 LINE L1 5793 6151 0 818 151 31 11 chr4 58599872 58600224 -143728123 + GA-rich Low_complexity Low_complexity 1 359 0 285 259 0 0 chr4 58600228 58600286 -143728061 + polypurine Low_complexity Low_complexity 2 59 0 611 202 0 9 chr4 58600617 58600731 -143727616 - Tigger1 DNA MER2_type -2 2416 2304 39154 83 11 11 chr4 58600742 58606879 -143721468 + L1PA6 LINE L1 11 6144 -10 712 101 28 0 chr4 58606879 58606988 -143721359 - Tigger1 DNA MER2_type -105 2313 2202 * 953 158 12 18 chr4 58606969 58607133 -143721214 - Tigger1 DNA MER2_type -2255 163 1 1457 178 45 119 chr4 58607293 58607633 -143720714 - MLT1B LTR MaLR 0 390 85 1614 67 0 14 chr4 58607633 58607841 -143720506 + AluY SINE Alu 103 307 -4 1457 178 45 119 chr4 58607841 58607921 -143720426 - MLT1B LTR MaLR -305 85 1 21 57 0 0 chr4 58608262 58608297 -143720050 + AT_rich Low_complexity Low_complexity 1 35 0 457 313 12 25 chr4 58608496 58608656 -143719691 + MLT1I LTR MaLR 249 406 -3 468 292 66 41 chr4 58610502 58610745 -143717602 + MIR SINE MIR 14 262 0 531 223 48 36 chr4 58613671 58613837 -143714510 + MIR SINE MIR 20 187 -75 286 289 122 11 chr4 58614113 58614203 -143714144 + MIR SINE MIR 31 130 -132 322 265 0 0 chr4 58614363 58614431 -143713916 - L2 LINE L2 0 3313 3246 294 269 60 40 chr4 58614764 58614878 -143713469 - L1MC4a LINE L1 -1916 5892 5773 207 0 0 0 chr4 58614878 58614901 -143713446 + (CA)n Simple_repeat Simple_repeat 1 23 0 294 269 60 40 chr4 58614901 58614935 -143713412 - L1MC4a LINE L1 -2035 5773 5741 252 322 79 35 chr4 58615241 58615383 -143712964 + MIR SINE MIR 4 150 -62 5129 157 40 30 chr4 58615570 58615982 -143712365 - L1MC1 LINE L1 -5 6328 5922 2559 50 3 0 chr4 58615982 58616279 -143712068 - AluY SINE Alu -13 298 1 5129 157 40 30 chr4 58616279 58616835 -143711512 - L1MC1 LINE L1 -411 5922 5350 1853 181 37 5 chr4 58617041 58617444 -143710903 - Charlie1 DNA MER1_type 0 2761 2346 598 304 103 5 chr4 58617741 58617965 -143710382 + MIR SINE MIR 15 260 -2 32170 110 13 68 chr4 58618065 58624579 -143703768 + L1PA7 LINE L1 12 6154 0 2448 70 3 3 chr4 58624584 58624884 -143703463 + AluSc SINE Alu 1 300 -9 23 33 0 0 chr4 58625205 58625235 -143703112 + AT_rich Low_complexity Low_complexity 1 30 0 231 311 89 15 chr4 58626223 58626358 -143701989 + L1ME4a LINE L1 5974 6118 -3 24 32 0 0 chr4 58626371 58626402 -143701945 + AT_rich Low_complexity Low_complexity 1 31 0 268 234 291 28 chr4 58628004 58628145 -143700202 + MER5B DNA MER1_type 1 178 0 199 297 61 88 chr4 58628420 58628568 -143699779 + L2 LINE L2 3128 3271 -1 240 206 32 0 chr4 58629037 58629100 -143699247 + HsTC2 DNA Tc2 259 323 -1575 * 980 235 69 15 chr4 58629094 58629354 -143698993 + HsTC2 DNA Tc2 1262 1711 -187 1197 173 51 0 chr4 58629438 58629652 -143698695 - MLT1B LTR MaLR -2 388 164 1258 180 0 5 chr4 58629689 58629900 -143698447 - AluJb SINE Alu -102 210 1 996 166 23 0 chr4 58629900 58630075 -143698272 - MLT1B LTR MaLR -211 179 1 446 283 0 0 chr4 58630201 58630307 -143698040 + MIR SINE MIR 156 261 -1 779 242 81 76 chr4 58631371 58631818 -143696529 + MLT1J2 LTR MaLR 2 450 0 1013 239 36 28 chr4 58631955 58632202 -143696145 + MIR SINE MIR 14 262 0 978 127 0 0 chr4 58633500 58633642 -143694705 + AluSg/x SINE Alu 137 278 -34 299 24 0 24 chr4 58633655 58633696 -143694651 + (GAAAA)n Simple_repeat Simple_repeat 2 41 0 233 213 49 16 chr4 58634218 58634279 -143694068 - MIR SINE MIR -33 229 167 688 278 17 0 chr4 58634310 58634483 -143693864 - MIR SINE MIR -84 178 3 774 282 58 41 chr4 58635812 58636156 -143692191 - MLT1I LTR MaLR -7 402 53 956 255 21 0 chr4 58636921 58637156 -143691191 - L1M1 LINE L1 -4443 3122 2883 1986 167 0 3 chr4 58638070 58638418 -143689929 + AluSx SINE Alu 1 347 0 204 247 52 26 chr4 58639205 58639282 -143689065 + MER5A DNA MER1_type 89 167 -22 * 281 302 23 12 chr4 58639220 58639306 -143689041 - MER5A DNA MER1_type -92 97 11 234 0 0 0 chr4 58640456 58640482 -143687865 + (GA)n Simple_repeat Simple_repeat 1 26 0 2472 155 24 35 chr4 58641292 58641492 -143686855 + MLT2C2 LTR ERVL 11 212 -252 234 0 0 0 chr4 58641492 58641518 -143686829 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 243 0 0 0 chr4 58641517 58641544 -143686803 + (GA)n Simple_repeat Simple_repeat 2 28 0 2472 155 24 35 chr4 58641518 58641754 -143686593 + MLT2C2 LTR ERVL 212 418 -46 490 0 46 0 chr4 58641754 58641819 -143686528 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 2472 155 24 35 chr4 58641819 58641858 -143686489 + MLT2C2 LTR ERVL 418 456 -8 282 227 0 53 chr4 58641989 58642064 -143686283 + MLT1L LTR MaLR 1 71 -544 617 303 58 25 chr4 58642088 58642365 -143685982 + MLT1J LTR MaLR 224 509 -2 267 348 124 45 chr4 58642876 58643166 -143685181 - L2 LINE L2 0 3272 2960 283 323 82 58 chr4 58643266 58643523 -143684824 - L2 LINE L2 -337 2977 2715 367 272 17 116 chr4 58645143 58645316 -143683031 + MLT1K LTR MaLR 69 224 -364 682 283 45 14 chr4 58646451 58646674 -143681673 + MIR SINE MIR 7 236 -26 403 254 51 62 chr4 58646758 58646935 -143681412 - L1MC5 LINE L1 -48 7913 7739 2315 70 0 23 chr4 58647816 58648118 -143680229 + AluSc SINE Alu 1 295 -14 623 271 38 93 chr4 58648304 58648702 -143679645 + MLT1I LTR MaLR 34 409 0 1450 186 129 21 chr4 58648872 58649258 -143679089 + MSTC LTR MaLR 1 428 0 625 208 108 84 chr4 58649405 58649655 -143678692 - MIR SINE MIR -2 260 5 315 179 105 21 chr4 58650049 58650144 -143678203 - L1ME4a LINE L1 0 6121 6019 739 240 5 5 chr4 58650186 58650382 -143677965 - L1M4 LINE L1 -1234 4912 4717 338 85 0 0 chr4 58650484 58650531 -143677816 - Alu SINE Alu -252 47 1 807 211 19 27 chr4 58650531 58650787 -143677560 - L1M4 LINE L1 -1454 4692 4439 * 1162 231 74 8 chr4 58650784 58651161 -143677186 - L1MDa LINE L1 -3154 3386 2985 776 264 42 32 chr4 58651196 58651605 -143676742 - L1MDa LINE L1 -4620 1920 1508 1757 222 23 23 chr4 58651972 58652414 -143675933 + L1MD1 LINE L1 5621 6062 -180 1343 171 4 29 chr4 58652418 58652664 -143675683 - AluJo SINE Alu -1 311 72 317 227 0 0 chr4 58652778 58652853 -143675494 - AluJ/FLAM SINE Alu -241 61 2 244 233 33 0 chr4 58652853 58652913 -143675434 + L1MD2 LINE L1 6080 6141 -218 376 204 100 29 chr4 58652914 58653061 -143675286 + L1MD2 LINE L1 6214 7807 -1 564 342 9 22 chr4 58653219 58653541 -143674806 - L1MDa LINE L1 -5660 870 553 511 333 125 12 chr4 58653992 58654328 -143674019 + L2 LINE L2 2283 2656 -658 27 29 0 0 chr4 58654583 58654617 -143673730 + AT_rich Low_complexity Low_complexity 1 34 0 207 0 0 0 chr4 58654794 58654817 -143673530 + (A)n Simple_repeat Simple_repeat 1 23 0 513 204 0 9 chr4 58655395 58655503 -143672844 - MER5A DNA MER1_type -74 115 9 192 361 10 31 chr4 58655536 58655633 -143672714 - L2 LINE L2 -16 3256 3162 202 97 32 0 chr4 58655809 58655840 -143672507 + CT-rich Low_complexity Low_complexity 1 32 0 2414 176 67 14 chr4 58656121 58656614 -143671733 + LTR53 LTR ERVL 1 519 0 405 210 0 134 chr4 58656971 58657128 -143671219 + L1ME LINE L1 5688 5823 -347 2047 104 4 0 chr4 58657130 58657398 -143670949 + AluSp SINE Alu 1 269 -44 378 143 29 0 chr4 58657500 58657570 -143670777 + MLT1F1 LTR MaLR 496 567 0 29 78 0 0 chr4 58658338 58658402 -143669945 + AT_rich Low_complexity Low_complexity 1 64 0 29 47 0 0 chr4 58658520 58658563 -143669784 + AT_rich Low_complexity Low_complexity 1 43 0 236 313 86 43 chr4 58658669 58658832 -143669515 + L2 LINE L2 2763 2932 -382 996 166 5 76 chr4 58659003 58659087 -143669260 + MIR SINE MIR 67 155 -107 2294 75 0 0 chr4 58659087 58659415 -143668932 + AluY SINE Alu 3 330 0 996 166 5 76 chr4 58659415 58659539 -143668808 + MIR SINE MIR 155 262 0 21 0 0 0 chr4 58659539 58659560 -143668787 + AT_rich Low_complexity Low_complexity 1 21 0 504 175 0 0 chr4 58660370 58660467 -143667880 + CT-rich Low_complexity Low_complexity 4 100 0 1728 176 42 0 chr4 58660706 58660995 -143667352 - AluJo SINE Alu -11 301 1 561 238 81 27 chr4 58661435 58661620 -143666727 + MIR SINE MIR 12 206 -56 2215 75 0 7 chr4 58662574 58662867 -143665480 - AluY SINE Alu -20 291 1 879 223 5 5 chr4 58663387 58663593 -143664754 - MER119 DNA MER1_type 0 583 378 5192 158 15 9 chr4 58663599 58663992 -143664355 + L1PB4 LINE L1 4235 4624 -1532 2253 94 0 3 chr4 58663992 58664279 -143664068 - AluSx SINE Alu -3 309 24 5192 158 15 9 chr4 58664279 58665424 -143662923 + L1PB4 LINE L1 4624 5785 -371 2283 142 3 5 chr4 58665469 58665842 -143662505 + L1PB4 LINE L1 5781 6152 -4 1621 233 21 19 chr4 58665849 58666223 -143662124 - MER119 DNA MER1_type -204 379 5 246 235 280 61 chr4 58666248 58666380 -143661967 + MER5A DNA MER1_type 26 186 -3 228 312 96 48 chr4 58666488 58666613 -143661734 + L2 LINE L2 3142 3272 0 664 301 78 57 chr4 58667520 58668220 -143660127 + L2 LINE L2 2572 3285 -28 293 360 56 31 chr4 58668225 58668386 -143659961 - MIR3 SINE MIR -28 180 16 320 339 59 25 chr4 58669071 58669307 -143659040 + L2 LINE L2 2658 2901 -413 915 193 84 129 chr4 58669380 58669784 -143658563 + MLT1B LTR MaLR 1 386 -4 423 310 31 0 chr4 58669832 58669961 -143658386 - MIR SINE MIR -25 237 105 620 298 107 60 chr4 58670134 58670516 -143657831 + L3 LINE CR1 1165 1564 -13 282 259 173 60 chr4 58671263 58671610 -143656737 - MLT1K LTR MaLR -9 579 194 478 339 57 22 chr4 58672103 58672496 -143655851 + MER115 DNA AcHobo 2 455 -238 272 208 19 0 chr4 58672492 58672545 -143655802 + Zaphod DNA AcHobo 3978 4031 0 * 194 322 98 44 chr4 58672582 58672787 -143655560 - L2 LINE L2 -735 2579 2364 21 36 0 0 chr4 58672886 58672914 -143655433 + AT_rich Low_complexity Low_complexity 1 28 0 1007 288 108 44 chr4 58672984 58673532 -143654815 - MLT1K LTR MaLR -4 584 2 3624 243 45 7 chr4 58673627 58674796 -143653551 + L1MB7 LINE L1 2623 3835 -2311 * 3765 191 61 9 chr4 58674789 58676465 -143651882 + L1MB7 LINE L1 4425 6184 0 183 80 0 0 chr4 58676491 58676516 -143651831 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 772 268 48 30 chr4 58676978 58677273 -143651074 + MLT1H1 LTR MaLR 1 300 -255 249 310 123 24 chr4 58677628 58677910 -143650437 - L3 LINE CR1 -63 1514 1166 963 218 5 0 chr4 58677919 58678107 -143650240 - MER5A DNA MER1_type 0 189 1 633 138 145 7 chr4 58678591 58678736 -143649611 + MIR SINE MIR 64 228 -34 240 286 36 12 chr4 58678749 58678833 -143649514 - MIR SINE MIR -100 162 77 564 246 126 17 chr4 58679895 58680070 -143648277 - MIR SINE MIR -5 257 64 343 280 10 20 chr4 58680165 58680265 -143648082 - MIR SINE MIR -89 173 75 191 140 40 60 chr4 58682806 58682856 -143645491 + L2 LINE L2 3264 3312 -1 184 278 56 28 chr4 58682967 58683039 -143645308 + MIR SINE MIR 33 106 -156 410 325 92 82 chr4 58683047 58683598 -143644749 - L2 LINE L2 -12 3260 2688 259 163 20 0 chr4 58683628 58683677 -143644670 - L2 LINE L2 0 3313 3264 284 374 6 28 chr4 58683726 58683905 -143644442 - L2 LINE L2 -710 2604 2430 375 286 38 8 chr4 58683927 58684084 -143644263 - MER20B DNA MER1_type 0 219 56 252 336 123 27 chr4 58684795 58685087 -143643260 - L2 LINE L2 -1106 2208 1889 760 311 82 22 chr4 58685090 58685405 -143642942 - MLT1I LTR MaLR -2 407 74 680 275 126 47 chr4 58686017 58686326 -143642021 + LTR33 LTR ERVL 1 303 -220 445 268 153 0 chr4 58686948 58687105 -143641242 + MER5A DNA MER1_type 9 189 0 860 264 92 3 chr4 58687116 58687145 -143641202 - MER5C DNA MER1_type -6 318 293 195 0 56 28 chr4 58687145 58687181 -143641166 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 860 264 92 3 chr4 58687181 58687443 -143640904 - MER5C DNA MER1_type -31 293 1 259 305 48 76 chr4 58687456 58687561 -143640786 - MIR SINE MIR -64 144 43 1002 17 0 33 chr4 58687609 58687729 -143640618 - SVA Other Other 0 1386 1271 595 278 77 43 chr4 58687759 58687977 -143640370 - MIR SINE MIR -10 252 24 1277 221 78 86 chr4 58687977 58688056 -143640291 - MLT2B1 LTR ERVL 0 520 442 2110 148 0 0 chr4 58688056 58688366 -143639981 - AluSx SINE Alu -2 310 1 1277 221 78 86 chr4 58688366 58688810 -143639537 - MLT2B1 LTR ERVL -78 442 1 595 278 77 43 chr4 58688810 58688825 -143639522 - MIR SINE MIR -238 24 11 432 118 54 0 chr4 58689403 58689496 -143638851 + CT-rich Low_complexity Low_complexity 3 100 0 312 27 0 0 chr4 58689498 58689535 -143638812 + (CA)n Simple_repeat Simple_repeat 2 38 0 2651 105 50 29 chr4 58689573 58689992 -143638355 + MSTA LTR MaLR 1 428 0 278 247 47 24 chr4 58690088 58690173 -143638174 + L2 LINE L2 2930 3016 -297 9897 31 0 0 chr4 58690177 58692137 -143636210 + L1PA2 LINE L1 4193 6155 0 1474 224 88 5 chr4 58692162 58692572 -143635775 - MLT1C LTR MaLR 0 467 24 5790 205 42 34 chr4 58692588 58693943 -143634404 - MLT1C-int LTR MaLR -5 1366 1 1452 207 84 33 chr4 58693963 58694355 -143633992 - MLT2C2 LTR ERVL -52 412 1 468 233 93 76 chr4 58694366 58694602 -143633745 + L2 LINE L2 3074 3313 0 268 259 141 0 chr4 58694687 58694772 -143633575 + MIR SINE MIR 154 250 -12 394 313 35 0 chr4 58694811 58694926 -143633421 - L2 LINE L2 -2 3311 3193 778 216 68 0 chr4 58695498 58695660 -143632687 + MER5B DNA MER1_type 1 173 -5 407 261 189 7 chr4 58695694 58695847 -143632500 - MER5A DNA MER1_type 0 189 9 1138 145 6 17 chr4 58696005 58696184 -143632163 - AluJo/FRAM SINE Alu 0 312 136 1974 129 0 39 chr4 58696186 58696496 -143631851 - AluSx SINE Alu -14 298 1 879 301 15 15 chr4 58696557 58696816 -143631531 + MIR SINE MIR 3 261 -1 265 339 52 26 chr4 58696823 58696938 -143631409 + MIR SINE MIR 23 140 -68 254 252 170 17 chr4 58697065 58697190 -143631157 + MIR SINE MIR 70 212 -50 539 279 132 23 chr4 58699418 58699815 -143628532 + L1ME4a LINE L1 5486 5926 -195 357 244 46 8 chr4 58699827 58699958 -143628389 + L1ME4a LINE L1 5975 6110 -11 6394 261 94 17 chr4 58700624 58702811 -143625536 + L2 LINE L2 463 2817 -497 1432 224 210 27 chr4 58702849 58703325 -143625022 + MLT1G1 LTR MaLR 1 589 -6 764 288 61 54 chr4 58703339 58703780 -143624567 + L2 LINE L2 2857 3300 -13 776 213 18 11 chr4 58704185 58704354 -143623993 - MLT1G1 LTR MaLR 0 595 412 566 149 53 0 chr4 58704580 58704674 -143623673 + AluSp SINE Alu 98 196 -117 1628 197 3 7 chr4 58754699 58754993 -143573354 + L1PB4 LINE L1 5862 6154 -2 245 265 60 28 chr4 58755133 58755416 -143572931 - L1MEc LINE L1 -4255 2141 1850 269 286 0 0 chr4 58755539 58755616 -143572731 - L1MEc LINE L1 -4756 1640 1564 839 172 44 49 chr4 58755836 58756039 -143572308 + MER20 DNA MER1_type 18 219 0 312 241 69 81 chr4 58756039 58756213 -143572134 + HAL1 LINE L1 22 193 -2314 522 299 174 17 chr4 58756481 58756825 -143571522 + HAL1 LINE L1 202 599 -1908 503 260 137 23 chr4 58756843 58757062 -143571285 + HAL1 LINE L1 683 926 -1581 446 49 16 0 chr4 58757163 58757224 -143571123 + AluY SINE Alu 238 299 -11 419 192 46 83 chr4 58757236 58757456 -143570891 - MIR SINE MIR -40 222 16 2104 107 13 3 chr4 58757973 58758271 -143570076 + AluSx SINE Alu 1 301 -11 197 298 167 18 chr4 58758745 58758859 -143569488 + MIR3 SINE MIR 30 160 -48 2355 119 30 0 chr4 58758962 58759298 -143569049 - THE1B LTR MaLR 0 364 19 194 289 0 0 chr4 58759763 58759801 -143568546 - MIR SINE MIR -21 241 204 638 168 7 0 chr4 58759807 58759944 -143568403 + (TCTA)n Simple_repeat Simple_repeat 2 139 0 1629 184 14 3 chr4 58759957 58760250 -143568097 + AluJo SINE Alu 1 296 -16 1955 141 3 7 chr4 58760252 58760557 -143567790 + AluSx SINE Alu 1 304 0 303 222 25 25 chr4 58760579 58760660 -143567687 - MIR SINE MIR -177 85 5 2524 251 67 3 chr4 58760912 58761658 -143566689 + L1M4 LINE L1 3028 3821 -2325 638 301 81 17 chr4 58761776 58762012 -143566335 - MIR SINE MIR -9 253 3 234 341 16 40 chr4 58763103 58763229 -143565118 - MIR3 SINE MIR -11 197 75 1328 70 18 12 chr4 58763421 58763649 -143564698 - L1M3 LINE L1 -631 5524 5293 2187 117 10 3 chr4 58763649 58763957 -143564390 - AluSg SINE Alu 0 310 1 192 40 0 0 chr4 58763978 58764003 -143564344 + (TG)n Simple_repeat Simple_repeat 2 26 0 4721 167 14 9 chr4 58764622 58766006 -143562341 - L1M2 LINE L1 -483 5817 4428 2097 116 13 16 chr4 58766228 58766531 -143561816 - AluSq SINE Alu -11 302 1 22 0 0 0 chr4 58767115 58767137 -143561210 + AT_rich Low_complexity Low_complexity 1 22 0 1688 160 3 53 chr4 58767658 58767976 -143560371 - AluJb SINE Alu -10 302 1 289 233 56 44 chr4 58768528 58768618 -143559729 - MIR SINE MIR 0 262 172 274 149 0 43 chr4 58768718 58768765 -143559582 - Alu SINE Alu -255 45 1 350 260 8 0 chr4 58769422 58769549 -143558798 + (TA)n Simple_repeat Simple_repeat 2 129 0 1508 234 49 0 chr4 58770609 58770934 -143557413 + MER58B DNA MER1_type 1 341 0 23 54 0 0 chr4 58771042 58771079 -143557268 + AT_rich Low_complexity Low_complexity 1 37 0 428 139 306 0 chr4 58771339 58771411 -143556936 - AluSg SINE Alu -215 95 2 326 282 81 32 chr4 58771545 58771669 -143556678 - L2 LINE L2 -2 3270 3141 1658 149 0 11 chr4 58772585 58772846 -143555501 + AluSx SINE Alu 35 292 -20 446 239 210 50 chr4 58774115 58774680 -143553667 - L2 LINE L2 0 3313 2578 692 266 46 79 chr4 58776061 58776174 -143552173 + MLT1K LTR MaLR 272 387 -201 2113 115 3 7 chr4 58776174 58776479 -143551868 - AluSx SINE Alu 0 312 9 692 266 46 79 chr4 58776479 58776669 -143551678 + MLT1K LTR MaLR 387 565 -23 243 0 0 0 chr4 58777165 58777192 -143551155 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 1580 108 0 5 chr4 58777192 58777400 -143550947 - AluSx SINE Alu -28 282 76 584 277 186 5 chr4 58777709 58777929 -143550418 - MIR SINE MIR 0 262 3 261 238 24 24 chr4 58777985 58778069 -143550278 - MLT1L LTR MaLR -310 305 222 386 248 14 126 chr4 58778307 58778521 -143549826 - L2 LINE L2 -978 2336 2147 1062 263 41 32 chr4 58779286 58779358 -143548989 + HERVL LTR ERVL 2855 2925 -2729 2065 103 0 43 chr4 58779358 58779682 -143548665 + AluSg SINE Alu 1 310 0 1062 263 41 32 chr4 58779682 58779951 -143548396 + HERVL LTR ERVL 2925 3199 -2455 3506 100 8 0 chr4 58780051 58780540 -143547807 - L1MA2 LINE L1 -371 5933 5441 2726 162 12 10 chr4 58780636 58781208 -143547139 - L1MA2 LINE L1 -743 5403 4858 481 135 27 0 chr4 58781581 58781655 -143546692 - AluSx SINE Alu -236 77 2 566 310 71 26 chr4 58782376 58782602 -143545745 - MIR SINE MIR -2 260 25 280 264 109 45 chr4 58782640 58782750 -143545597 - MLT1J LTR MaLR -13 498 382 745 217 139 17 chr4 58783326 58783547 -143544800 - MLT1J1 LTR MaLR -79 371 123 277 324 63 7 chr4 58783838 58783980 -143544367 + MIR SINE MIR 56 205 -57 682 300 195 12 chr4 58784005 58784405 -143543942 - L3 LINE CR1 -86 1491 1019 790 258 50 111 chr4 58784415 58784957 -143543390 - MLT1J LTR MaLR 0 511 3 525 266 70 25 chr4 58785234 58785433 -143542914 + L1ME LINE L1 5611 5818 -303 2426 171 0 59 chr4 58785441 58785592 -143542755 + Tigger2a DNA MER2_type 1 159 -2549 1819 109 128 8 chr4 58785592 58785858 -143542489 - AluSg SINE Alu -2 298 1 2426 171 0 59 chr4 58785858 58786167 -143542180 + Tigger2a DNA MER2_type 159 434 0 364 175 105 88 chr4 58787638 58787752 -143540595 - L2 LINE L2 -5 3308 3193 1190 247 97 43 chr4 58787806 58788271 -143540076 + MLT1H1 LTR MaLR 66 555 0 2198 35 28 18 chr4 58788447 58788732 -143539615 - AluY SINE Alu -23 288 1 1721 140 146 16 chr4 58789695 58790016 -143538331 - MLT1A1 LTR MaLR -2 363 1 513 217 7 63 chr4 58790604 58790712 -143537635 - MIR SINE MIR -60 202 102 1994 137 74 91 chr4 58790712 58791142 -143537205 + MSTA LTR MaLR 2 424 -4 513 217 7 63 chr4 58791142 58791176 -143537171 - MIR SINE MIR -160 102 68 419 259 110 53 chr4 58791186 58791414 -143536933 - MLT1K LTR MaLR -19 569 329 448 231 66 25 chr4 58792358 58792479 -143535868 + MIR SINE MIR 16 141 -67 369 219 122 16 chr4 58792845 58792968 -143535379 - L1ME3A LINE L1 -300 5870 5735 698 253 16 83 chr4 58793200 58793453 -143534894 + MIR SINE MIR 13 248 -14 222 91 0 0 chr4 58793468 58793501 -143534846 + (TG)n Simple_repeat Simple_repeat 1 33 0 210 71 0 0 chr4 58793501 58793529 -143534818 + (GA)n Simple_repeat Simple_repeat 2 29 0 228 211 0 0 chr4 58794278 58794330 -143534017 + MIR SINE MIR 151 202 -60 187 173 39 0 chr4 58794356 58794408 -143533939 + (TA)n Simple_repeat Simple_repeat 1 54 0 2417 67 10 0 chr4 58794526 58794825 -143533522 - AluSx SINE Alu -10 302 1 1341 198 7 25 chr4 58795431 58795714 -143532633 + THE1B-int LTR MaLR 1374 1651 0 1734 167 35 0 chr4 58795732 58796014 -143532333 + THE1B LTR MaLR 1 292 -72 2118 157 34 14 chr4 58796014 58796370 -143531977 + THE1B LTR MaLR 1 363 -1 6765 51 4 1 chr4 58797446 58798555 -143529792 + L1P2 LINE L1 4530 5642 -512 423 185 0 0 chr4 58798553 58798634 -143529713 - L1P2 LINE L1 -721 5433 5353 * 264 303 9 0 chr4 58798634 58798743 -143529604 + (CCCCG)n Simple_repeat Simple_repeat 3 112 0 * 366 190 33 30 chr4 58798662 58798925 -143529422 + (CACCC)n Simple_repeat Simple_repeat 1 263 0 260 266 43 32 chr4 58799060 58799154 -143529193 - L2 LINE L2 -38 3275 3181 454 274 95 12 chr4 58799192 58799360 -143528987 - MIR SINE MIR -41 221 40 614 265 148 22 chr4 58799360 58799583 -143528764 + MIR SINE MIR 12 262 0 2378 88 10 0 chr4 58800106 58800414 -143527933 - AluSp SINE Alu -2 311 1 1348 180 29 0 chr4 58801160 58801405 -143526942 - Tigger1 DNA MER2_type -2166 252 1 2451 42 0 3 chr4 58801652 58801937 -143526410 - AluY SINE Alu -11 300 17 21 0 0 0 chr4 58802539 58802560 -143525787 + AT_rich Low_complexity Low_complexity 1 21 0 9977 89 10 4 chr4 58802660 58804171 -143524176 + L1P3 LINE L1 3955 5470 -684 602 41 0 0 chr4 58804171 58804244 -143524103 - L1PA4 LINE L1 -2 6153 6081 2047 166 32 56 chr4 58804604 58804978 -143523369 + MLT1A1 LTR MaLR 1 365 0 375 214 48 12 chr4 58805606 58805690 -143522657 - MER45A DNA AcHobo -1 177 91 1677 156 10 30 chr4 58805690 58805992 -143522355 + AluJb SINE Alu 1 296 -16 338 110 12 73 chr4 58805995 58806077 -143522270 + MLT1C LTR MaLR 147 223 -167 * 587 215 37 6 chr4 58806068 58806231 -143522116 + MLT1C LTR MaLR 188 355 -112 1377 160 0 0 chr4 58806231 58806444 -143521903 + AluSq SINE Alu 1 213 -100 243 179 0 90 chr4 58806595 58806673 -143521674 - L1 LINE L1 -1895 4251 4181 2312 86 0 7 chr4 58806697 58806989 -143521358 - AluY SINE Alu -21 290 1 1305 252 140 2 chr4 58806990 58807427 -143520920 - Charlie7 DNA MER1_type -372 2240 1744 458 275 99 30 chr4 58807424 58807657 -143520690 - Charlie7 DNA MER1_type -2018 594 346 * 2181 122 13 3 chr4 58807893 58808197 -143520150 - AluSx SINE Alu 0 312 6 243 275 101 0 chr4 58808431 58808500 -143519847 + L1MEd LINE L1 553 628 -5491 422 183 153 0 chr4 58808974 58809105 -143519242 - MER5C DNA MER1_type -54 270 120 4868 177 23 34 chr4 58809217 58809663 -143518684 + L1MC3 LINE L1 6814 7263 -522 2336 115 72 26 chr4 58809663 58810010 -143518337 + THE1B LTR MaLR 1 363 -1 4868 177 23 34 chr4 58810010 58810545 -143517802 + L1MC3 LINE L1 7263 7785 0 1873 152 76 60 chr4 58810599 58810981 -143517366 + MLT1B LTR MaLR 1 388 -2 2105 125 3 0 chr4 58811338 58811635 -143516712 + AluY SINE Alu 1 298 -13 16431 57 4 0 chr4 58811822 58813944 -143514403 + L1P2 LINE L1 3308 5438 -716 1352 157 10 10 chr4 58814048 58814361 -143513986 + Ricksha DNA DNA 2987 3254 -43 1967 228 19 53 chr4 58814370 58814791 -143513556 - L1M4 LINE L1 -1067 5079 4688 2661 42 0 3 chr4 58814791 58815099 -143513248 - AluY SINE Alu -4 307 1 1967 228 19 53 chr4 58815099 58815353 -143512994 - L1M4 LINE L1 -1458 4688 4427 4085 240 26 20 chr4 58815359 58816582 -143511765 - L1 LINE L1 -2155 3991 2762 1545 68 0 0 chr4 58816682 58816889 -143511458 - L1P LINE L1 -814 5332 5126 4345 62 0 0 chr4 58816889 58817402 -143510945 + L1PA5 LINE L1 5639 6154 0 181 359 76 33 chr4 58817787 58817879 -143510468 + L2 LINE L2 3117 3212 -60 2747 203 18 4 chr4 58818095 58818593 -143509754 - MLT1D LTR MaLR 0 505 1 1132 188 16 0 chr4 58818617 58818803 -143509544 + MER5A DNA MER1_type 1 189 0 188 218 51 77 chr4 58819729 58819807 -143508540 - L2 LINE L2 -2792 522 447 1966 134 7 51 chr4 58820102 58820575 -143507772 - L1P LINE L1 -741 5420 4982 2237 176 41 19 chr4 58820577 58821043 -143507304 - L1MDa LINE L1 -4399 2141 1666 * 3790 223 129 9 chr4 58821039 58821529 -143506818 - L1MDa LINE L1 -5483 1057 628 1342 174 54 120 chr4 58821529 58821920 -143506427 - MLT1A1 LTR MaLR 0 365 1 3790 223 129 9 chr4 58821920 58822348 -143505999 - L1MDa LINE L1 -5912 628 28 310 319 49 19 chr4 58823452 58823660 -143504687 - L2 LINE L2 -3 3269 3004 865 248 53 4 chr4 58824923 58825149 -143503198 + MIR SINE MIR 17 253 -9 356 258 305 6 chr4 58825598 58825765 -143502582 + MIR SINE MIR 42 258 -4 198 283 217 0 chr4 58825843 58825963 -143502384 - L2 LINE L2 0 3313 3168 302 243 9 75 chr4 58825985 58826092 -143502255 + MER91B DNA MER1_type 20 119 -71 385 216 93 21 chr4 58826114 58826211 -143502136 + MER91B DNA MER1_type 83 186 -4 24 0 0 0 chr4 58826725 58826749 -143501598 + AT_rich Low_complexity Low_complexity 1 24 0 319 289 117 15 chr4 58828600 58828797 -143499550 + MIR SINE MIR 46 262 0 297 308 77 0 chr4 58829067 58829158 -143499189 + MIR SINE MIR 34 131 -77 251 286 0 0 chr4 58829287 58829350 -143498997 + L2 LINE L2 3246 3308 -5 248 349 66 9 chr4 58829458 58829564 -143498783 + MIR3 SINE MIR 69 180 -28 266 211 0 0 chr4 58829787 58829839 -143498508 - MER94 DNA DNA -80 54 3 463 269 167 11 chr4 58829979 58830165 -143498182 + L3 LINE CR1 1130 1344 -233 625 110 0 35 chr4 58830292 58830565 -143497782 + AluSx SINE Alu 1 312 0 386 109 16 16 chr4 58830943 58831007 -143497340 - Tigger4(Zombi) DNA MER2_type -2 2729 2666 245 265 133 20 chr4 58832341 58832492 -143495855 + MER3 DNA MER1_type 1 168 -41 203 196 39 0 chr4 58833700 58833751 -143494596 + CT-rich Low_complexity Low_complexity 5 57 0 1104 142 123 97 chr4 58834305 58834614 -143493733 + MER33 DNA MER1_type 8 324 0 643 300 128 50 chr4 58834685 58834954 -143493393 - L1MC4a LINE L1 -1894 5914 5597 2060 128 0 0 chr4 58834954 58835242 -143493105 + AluSc SINE Alu 1 288 -21 643 300 128 50 chr4 58835242 58835409 -143492938 - L1MC4a LINE L1 -2211 5597 5444 1986 123 7 0 chr4 58835468 58835745 -143492602 + AluSx SINE Alu 1 279 -33 432 0 0 0 chr4 58835745 58835793 -143492554 + (CA)n Simple_repeat Simple_repeat 1 48 0 415 273 35 48 chr4 58835978 58836124 -143492223 - MIR SINE MIR -58 204 61 481 281 81 5 chr4 58836149 58836334 -143492013 + MIR SINE MIR 46 244 -18 310 130 0 43 chr4 58836335 58836404 -143491943 + (TATG)n Simple_repeat Simple_repeat 3 68 0 2458 88 0 0 chr4 58837999 58838306 -143490041 - AluSg SINE Alu -3 307 1 256 262 67 62 chr4 58840538 58840729 -143487618 + MIR SINE MIR 5 191 -65 189 359 0 0 chr4 58841293 58841357 -143486990 - L2 LINE L2 0 3272 3209 * 431 280 91 14 chr4 58841343 58841486 -143486861 - MIR SINE MIR -32 230 77 * 433 285 116 45 chr4 58841481 58841748 -143486599 - L2 LINE L2 -523 2791 2506 230 383 175 0 chr4 58841889 58842009 -143486338 - MIR SINE MIR -97 165 25 184 229 0 0 chr4 58842111 58842146 -143486201 - L2 LINE L2 -21 3292 3258 423 331 78 20 chr4 58843554 58843799 -143484548 - MIR SINE MIR -2 260 2 410 342 84 14 chr4 58845472 58845747 -143482600 + L3b LINE CR1 1104 1397 -186 2268 109 13 0 chr4 58848256 58848559 -143479788 - AluSx SINE Alu -5 307 1 821 260 11 105 chr4 58849465 58849827 -143478520 + L2 LINE L2 2974 3301 -12 21 0 0 0 chr4 58851155 58851176 -143477171 + AT_rich Low_complexity Low_complexity 1 21 0 2167 119 0 28 chr4 58851708 58852028 -143476319 + AluSx SINE Alu 1 311 -1 21 57 0 0 chr4 58855002 58855037 -143473310 + AT_rich Low_complexity Low_complexity 1 35 0 444 337 141 0 chr4 58855247 58855410 -143472937 + MER91A DNA MER1_type 1 186 -10 510 181 63 8 chr4 58855710 58855837 -143472510 - MER94 DNA DNA 0 134 1 1802 153 0 29 chr4 58856828 58857182 -143471165 - AluJo SINE Alu 0 312 1 184 296 0 0 chr4 58857275 58857319 -143471028 - L2 LINE L2 -1282 2032 1989 386 258 140 59 chr4 58857470 58857656 -143470691 - MIR SINE MIR -3 259 59 2813 85 15 3 chr4 58859363 58859752 -143468595 - L1PA10 LINE L1 -10 6158 5765 223 364 0 54 chr4 58860822 58860951 -143467396 - MIR SINE MIR -79 183 62 3178 96 0 4 chr4 58861827 58862277 -143466070 + L1PA13 LINE L1 5710 6157 -6 867 140 126 5 chr4 58862329 58862536 -143465811 + L1MDa LINE L1 2129 2360 -4180 * 14417 101 4 1 chr4 58862531 58864760 -143463587 + L1P LINE L1 1430 3665 -2481 241 220 0 20 chr4 58864867 58864917 -143463430 - L2 LINE L2 -61 3252 3204 222 259 67 118 chr4 58864925 58865060 -143463287 + L2 LINE L2 3145 3272 0 189 280 40 27 chr4 58866203 58866278 -143462069 - L2 LINE L2 -13 3259 3184 1371 130 29 42 chr4 58866780 58867019 -143461328 - MER46A DNA MER2_type 0 236 1 213 183 37 49 chr4 58868744 58868771 -143459576 + (TAA)n Simple_repeat Simple_repeat 1 27 -54 809 152 8 15 chr4 58868771 58868903 -143459444 + FLAM_C SINE Alu 2 132 -1 213 183 37 49 chr4 58868903 58868957 -143459390 + (TAA)n Simple_repeat Simple_repeat 27 81 0 682 276 92 18 chr4 58869097 58869314 -143459033 - MIR SINE MIR -23 239 7 257 221 39 10 chr4 58869383 58869487 -143458860 + CT-rich Low_complexity Low_complexity 3 109 0 2282 100 3 0 chr4 58869783 58870074 -143458273 - AluSq SINE Alu -21 292 1 581 219 0 37 chr4 58870296 58870460 -143457887 - MER103 DNA DNA -7 159 2 1726 243 134 20 chr4 58871769 58872373 -143455974 + L2 LINE L2 2060 2732 -582 213 256 25 0 chr4 58872495 58872548 -143455799 + MIR SINE MIR 12 67 -141 2540 97 21 90 chr4 58872839 58873216 -143455131 + Tigger2a DNA MER2_type 1 342 -2366 2439 88 0 3 chr4 58873216 58873522 -143454825 - AluSq SINE Alu -8 305 1 2540 97 21 90 chr4 58873522 58873610 -143454737 + Tigger2a DNA MER2_type 342 434 0 214 328 33 0 chr4 58873804 58873865 -143454482 - MIR SINE MIR -194 68 6 2325 185 157 0 chr4 58874101 58874610 -143453737 - Ricksha DNA DNA -2649 597 9 792 233 106 33 chr4 58874620 58874933 -143453414 + L1MD1 LINE L1 5082 5411 -768 2019 147 10 48 chr4 58874933 58875238 -143453109 + L1MD1 LINE L1 5861 6150 -92 2226 99 0 0 chr4 58875238 58875562 -143452785 - AluSg SINE Alu 0 324 1 2019 147 10 48 chr4 58875562 58875651 -143452696 + L1MD1 LINE L1 6150 6241 -1 792 233 106 33 chr4 58875651 58875677 -143452670 + L1MD1 LINE L1 5411 5434 -745 23 0 0 0 chr4 58876285 58876308 -143452039 + AT_rich Low_complexity Low_complexity 1 23 0 3426 67 2 7 chr4 58876343 58876789 -143451558 + MLT2A1 LTR ERVL 1 444 0 577 289 28 82 chr4 58877792 58877992 -143450355 - MLT1J LTR MaLR -4 507 337 2045 158 2 104 chr4 58877992 58878453 -143449894 - MLT2D LTR ERVL 0 414 1 577 289 28 82 chr4 58878453 58878643 -143449704 - MLT1J LTR MaLR -174 337 138 584 290 80 21 chr4 58878732 58879259 -143449088 - L1MEd LINE L1 -4862 1257 700 229 303 13 0 chr4 58880312 58880388 -143447959 - MIR3 SINE MIR -2 206 130 16507 110 23 8 chr4 58880490 58882621 -143445726 + L1P LINE L1 11 2187 -3959 2429 80 0 3 chr4 58882621 58882921 -143445426 + AluY SINE Alu 1 299 -12 16507 110 23 8 chr4 58882921 58883351 -143444996 + L1P LINE L1 2187 2609 -3537 2322 48 6 0 chr4 58883364 58883695 -143444652 + L1P LINE L1 3010 3342 -2804 315 85 0 0 chr4 58884543 58884590 -143443757 + (TG)n Simple_repeat Simple_repeat 2 48 0 240 226 0 0 chr4 58886157 58886219 -143442128 + (TG)n Simple_repeat Simple_repeat 2 63 0 2045 117 7 7 chr4 58886722 58887012 -143441335 + AluSq SINE Alu 13 302 -11 2180 118 7 0 chr4 58889504 58889801 -143438546 + AluSx SINE Alu 1 299 -13 957 289 173 6 chr4 58889900 58890358 -143437989 - L2 LINE L2 0 3313 2777 233 185 77 77 chr4 58891335 58891400 -143436947 - L2 LINE L2 0 3313 3249 291 146 0 0 chr4 58891402 58891457 -143436890 + (TG)n Simple_repeat Simple_repeat 2 56 0 221 354 12 12 chr4 58893374 58893456 -143434891 - MER5A DNA MER1_type -107 82 1 825 152 0 8 chr4 58893516 58893648 -143434699 - FLAM_C SINE Alu -12 131 1 301 261 157 0 chr4 58895591 58895725 -143432622 + MIR3 SINE MIR 46 200 -8 758 173 0 0 chr4 58897096 58897223 -143431124 - FLAM_C SINE Alu -6 127 1 351 0 0 0 chr4 58897280 58897319 -143431028 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 252 204 0 0 chr4 58897322 58897366 -143430981 - FLAM SINE Alu -13 120 77 200 91 0 30 chr4 58897867 58897900 -143430447 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 618 245 154 19 chr4 58898033 58898241 -143430106 + MIR SINE MIR 1 236 -26 384 203 54 0 chr4 58898355 58898429 -143429918 - L2 LINE L2 -2 3270 3193 4609 47 0 0 chr4 58898691 58899284 -143429063 + L1PA5 LINE L1 4388 4980 -1166 6453 36 13 0 chr4 58899384 58900162 -143428185 + L1PA5 LINE L1 5364 6151 -3 5706 34 15 7 chr4 58899486 58900170 -143428177 + L1PA5 LINE L1 5466 6154 0 321 252 48 10 chr4 58900171 58900274 -143428073 + L1MC5 LINE L1 7835 7941 -20 319 269 40 86 chr4 58900367 58900542 -143427805 + MIR SINE MIR 86 252 -10 889 188 0 0 chr4 58900645 58900799 -143427548 + FRAM SINE Alu 1 154 -22 395 213 140 29 chr4 58901715 58901851 -143426496 - MIR SINE MIR -2 260 110 811 160 8 30 chr4 58902386 58902517 -143425830 - FLAM_C SINE Alu -11 132 5 234 263 0 0 chr4 58902608 58902665 -143425682 - MIR SINE MIR -21 241 185 216 278 0 37 chr4 58902675 58902729 -143425618 - MIR SINE MIR -210 52 1 645 250 11 69 chr4 58902798 58903058 -143425289 - MIR SINE MIR -3 259 15 267 256 128 62 chr4 58903180 58903375 -143424972 + MER102a DNA MER1_type 122 329 -1 2745 161 16 9 chr4 58904193 58904616 -143423731 + MSTB LTR MaLR 1 426 0 1305 283 58 28 chr4 58904660 58905088 -143423259 - MLT1K LTR MaLR -42 546 106 611 307 16 5 chr4 58906396 58906585 -143421762 - MIR SINE MIR -8 254 64 417 20 0 0 chr4 58906858 58906908 -143421439 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 333 246 82 22 chr4 58907323 58907457 -143420890 + L1ME4a LINE L1 5593 5734 -2074 656 273 37 11 chr4 58907533 58907761 -143420586 + MIR SINE MIR 3 238 -24 22 35 0 0 chr4 58907789 58907818 -143420529 + AT_rich Low_complexity Low_complexity 1 29 0 677 207 218 0 chr4 58907826 58908019 -143420328 - L1ME1 LINE L1 0 6166 5932 11164 73 5 0 chr4 58908032 58910198 -143418149 - L1PA6 LINE L1 0 6154 3982 23738 116 17 26 chr4 58910198 58913990 -143414357 - L1PA6 LINE L1 -2379 3767 11 301 151 96 27 chr4 58914000 58914073 -143414274 - L1ME1 LINE L1 -220 5946 5869 1080 176 0 0 chr4 58914076 58914252 -143414095 - AluSg/x SINE Alu 0 312 137 1463 188 84 3 chr4 58914252 58914560 -143413787 - L1ME1 LINE L1 -291 5875 5543 2006 83 0 136 chr4 58914601 58914961 -143413386 + AluY SINE Alu 1 311 0 1292 154 9 14 chr4 58914973 58915187 -143413160 + AluJb SINE Alu 1 213 -99 2071 131 10 0 chr4 58915794 58916091 -143412256 - 7SLRNA srpRNA srpRNA -15 305 6 1018 201 50 14 chr4 58916133 58916640 -143411707 - L1ME3 LINE L1 0 6162 5551 1565 181 27 17 chr4 58916671 58916964 -143411383 - AluJo SINE Alu -16 296 1 195 188 0 0 chr4 58919129 58919177 -143409170 + (TAA)n Simple_repeat Simple_repeat 1 48 0 24 53 0 0 chr4 58920174 58920212 -143408135 + AT_rich Low_complexity Low_complexity 1 38 0 388 227 102 8 chr4 58920218 58920346 -143408001 + L1ME4a LINE L1 5968 6107 -14 878 289 8 16 chr4 58920370 58920619 -143407728 - MIR SINE MIR 0 262 16 285 225 28 14 chr4 58920749 58920820 -143407527 + (CACCAT)n Simple_repeat Simple_repeat 1 72 0 2175 78 30 14 chr4 58920848 58921143 -143407204 + AluSx SINE Alu 1 300 -12 2014 122 31 0 chr4 58922012 58922298 -143406049 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr4 58922779 58922800 -143405547 + AT_rich Low_complexity Low_complexity 1 21 0 286 273 159 23 chr4 58923063 58923195 -143405152 + MIR SINE MIR 101 250 -12 240 238 164 33 chr4 58923174 58923296 -143405051 + MIR3 SINE MIR 5 142 -66 * 194 237 51 0 chr4 58923330 58923389 -143404958 + L2 LINE L2 3210 3271 -1 2430 73 3 13 chr4 58924086 58924400 -143403947 + AluY SINE Alu 1 311 0 21 36 0 0 chr4 58924632 58924660 -143403687 + AT_rich Low_complexity Low_complexity 1 28 0 1109 132 6 6 chr4 58925400 58925567 -143402780 + L1PB4 LINE L1 5990 6156 0 403 345 88 53 chr4 58925794 58926465 -143401882 + L2 LINE L2 2596 3272 0 6020 152 12 34 chr4 58926690 58927681 -143400666 - L1MA7 LINE L1 0 6877 5866 2076 142 3 3 chr4 58927681 58927992 -143400355 - AluJo SINE Alu -1 311 1 6020 152 12 34 chr4 58927992 58928946 -143399401 - L1MA7 LINE L1 -1011 5866 4952 3127 70 0 0 chr4 58928946 58929331 -143399016 - L1PA5 LINE L1 0 6154 5770 668 208 8 0 chr4 58929996 58930116 -143398231 + FRAM SINE Alu 21 141 -35 1205 49 0 0 chr4 58931171 58931314 -143397033 - L1P2 LINE L1 -376 5778 5636 21237 54 5 0 chr4 58931414 58934079 -143394268 - L1P2 LINE L1 -1638 4508 1832 3564 147 2 0 chr4 58934090 58934615 -143393732 + L1P LINE L1 12 537 -5609 1290 129 5 0 chr4 58934625 58934818 -143393529 - L1P LINE L1 -5951 195 2 9851 233 52 26 chr4 58934819 58940457 -143387890 - L1MA7 LINE L1 -1779 4953 1 4718 103 219 79 chr4 58940462 58941831 -143386516 + pTR5 LTR ERV1 743 2438 0 209 322 79 13 chr4 58942979 58943131 -143385216 - L2 LINE L2 -189 3083 2922 215 356 50 64 chr4 58943166 58943447 -143384900 - L2 LINE L2 -458 2856 2580 1993 139 10 0 chr4 58943797 58944092 -143384255 + AluSx SINE Alu 1 298 -14 677 233 141 92 chr4 58944257 58944781 -143383566 + L1ME4a LINE L1 5569 6118 -3 350 208 148 20 chr4 58944825 58944926 -143383421 - L2 LINE L2 -6 3307 3194 848 286 89 41 chr4 58944983 58945399 -143382948 - MLT1K LTR MaLR -8 580 145 210 91 0 0 chr4 58946314 58946347 -143382000 + (CA)n Simple_repeat Simple_repeat 1 33 0 439 216 98 0 chr4 58946381 58946483 -143381864 + MER117 DNA MER1_type 50 161 -36 259 319 183 34 chr4 58947435 58947670 -143380677 - L2 LINE L2 -48 3265 2996 912 259 118 48 chr4 58947697 58948111 -143380236 - L2 LINE L2 0 3313 2871 1255 186 63 25 chr4 58948902 58949187 -143379160 + MLT1C LTR MaLR 11 306 -161 801 175 78 12 chr4 58949225 58949391 -143378956 + MLT1C LTR MaLR 291 467 0 2501 153 168 8 chr4 58949532 58950049 -143378298 + L1PA16 LINE L1 5567 6166 0 373 227 23 78 chr4 58950054 58950182 -143378165 + MER21B LTR ERV1 347 467 -396 506 269 150 5 chr4 58950216 58950409 -143377938 + MIR SINE MIR 28 248 -14 272 297 141 0 chr4 58950737 58950865 -143377482 - MIR SINE MIR -6 256 111 448 282 72 39 chr4 58950980 58951179 -143377168 + MIR3 SINE MIR 3 206 -2 2224 107 0 0 chr4 58951784 58952074 -143376273 + AluSg1 SINE Alu 12 301 -8 350 288 40 8 chr4 58952109 58952234 -143376113 - MIR SINE MIR -122 140 12 23 0 0 0 chr4 58952645 58952668 -143375679 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 58952989 58953012 -143375335 + AT_rich Low_complexity Low_complexity 1 23 0 1232 174 116 47 chr4 58954160 58954435 -143373912 - AluJo SINE Alu -8 294 1 506 254 0 0 chr4 58954683 58954797 -143373550 + MIR SINE MIR 14 127 -135 505 238 63 92 chr4 58955153 58955279 -143373068 - MIR SINE MIR -20 242 123 2916 3 3 0 chr4 58955279 58955596 -143372751 - AluYb8 SINE Alu 0 318 1 505 238 63 92 chr4 58955596 58955675 -143372672 - MIR SINE MIR -139 123 43 216 86 0 0 chr4 58955996 58956031 -143372316 + (A)n Simple_repeat Simple_repeat 1 35 0 183 314 71 14 chr4 58956631 58956701 -143371646 + L2 LINE L2 3162 3235 -37 330 359 103 16 chr4 58957861 58958374 -143369973 + L2 LINE L2 1932 2489 -825 822 259 116 0 chr4 58959597 58959813 -143368534 - MIR SINE MIR 0 262 22 467 247 27 108 chr4 58960744 58960930 -143367417 + MER5B DNA MER1_type 1 171 -7 2231 82 20 10 chr4 58961781 58962085 -143366262 + AluSg1 SINE Alu 1 307 -2 22 0 0 0 chr4 58962380 58962402 -143365945 + AT_rich Low_complexity Low_complexity 1 22 0 281 182 18 0 chr4 58962551 58962606 -143365741 - MLT1F-int LTR MaLR -1315 56 1 1908 223 58 11 chr4 58962606 58963108 -143365239 - MLT1F LTR MaLR 0 531 14 3022 230 39 10 chr4 58963116 58963981 -143364366 - L1M4 LINE L1 -1661 4485 3596 308 283 27 38 chr4 58963987 58964171 -143364176 + L1MC5 LINE L1 7731 7912 -49 348 177 0 0 chr4 58964188 58964250 -143364097 - Alu SINE Alu 0 301 240 870 164 14 0 chr4 58964257 58964397 -143363950 - AluSq/x SINE Alu -170 142 1 266 164 182 0 chr4 58964685 58964740 -143363607 - MER5A DNA MER1_type 0 189 125 2106 124 0 0 chr4 58964740 58965073 -143363274 + AluSx SINE Alu 1 333 0 1703 161 24 0 chr4 58965083 58965381 -143362966 + L1MC1 LINE L1 6028 6332 -1 616 268 0 0 chr4 58965396 58965519 -143362828 - MER5A DNA MER1_type -50 139 17 250 347 25 25 chr4 58965649 58965770 -143362577 - L2 LINE L2 -4 3268 3148 514 287 37 37 chr4 58965966 58966130 -143362217 - MIR3 SINE MIR -27 181 18 572 183 10 0 chr4 58966380 58966484 -143361863 - MIR SINE MIR -79 183 79 219 277 0 0 chr4 58966818 58966883 -143361464 + (CA)n Simple_repeat Simple_repeat 2 66 0 300 263 56 72 chr4 58968013 58968264 -143360083 + L1ME4a LINE L1 5864 6110 -11 22 80 0 0 chr4 58968265 58968315 -143360032 + AT_rich Low_complexity Low_complexity 1 50 0 195 42 0 0 chr4 58969243 58969267 -143359080 + (T)n Simple_repeat Simple_repeat 1 24 0 269 273 39 13 chr4 58969489 58969566 -143358781 + MIR SINE MIR 16 94 -114 423 83 0 0 chr4 58969892 58969952 -143358395 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 641 126 9 0 chr4 58969997 58970108 -143358239 + (TGGA)n Simple_repeat Simple_repeat 1 112 0 816 264 34 29 chr4 58970120 58970359 -143357988 + MIR SINE MIR 23 262 0 515 355 125 17 chr4 58970660 58971004 -143357343 - L1MC/D LINE L1 -2024 5784 5404 342 324 26 22 chr4 58971404 58971615 -143356732 + L1MB8 LINE L1 5484 5663 -458 455 240 20 0 chr4 58971647 58971747 -143356600 - MER5A DNA MER1_type -75 114 13 2219 96 3 0 chr4 58972118 58972409 -143355938 - AluSp SINE Alu -21 292 1 1519 160 22 52 chr4 58972539 58972901 -143355446 + L1MB8 LINE L1 5827 6177 -1 3198 163 22 9 chr4 58973603 58974321 -143354026 - L1M1 LINE L1 -526 5779 5072 194 79 0 26 chr4 58974321 58974359 -143353988 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3198 163 22 9 chr4 58974359 58974741 -143353606 - L1M1 LINE L1 -1233 5072 4659 285 29 0 0 chr4 58974741 58974775 -143353572 + (TG)n Simple_repeat Simple_repeat 1 34 0 3198 163 22 9 chr4 58974775 58974835 -143353512 - L1M1 LINE L1 -1646 4659 4601 6513 121 12 8 chr4 58974874 58976174 -143352173 - L1MA3 LINE L1 0 6305 4999 278 316 51 49 chr4 58976235 58976666 -143351681 - L1M4 LINE L1 -768 5378 4947 1095 215 29 0 chr4 58976666 58976875 -143351472 + MIR SINE MIR 46 260 -2 234 273 182 0 chr4 58976950 58977126 -143351221 - L1M4 LINE L1 -1300 4846 4639 2375 108 0 0 chr4 58979618 58979923 -143348424 + AluSx SINE Alu 1 305 -7 192 158 0 0 chr4 58979981 58980019 -143348328 + T-rich Low_complexity Low_complexity 1 38 0 191 286 32 16 chr4 58980031 58980094 -143348253 - MIR SINE MIR -107 155 92 313 273 124 80 chr4 58980537 58980786 -143347561 + L1M4 LINE L1 774 1033 -5816 794 170 7 14 chr4 59031194 59031341 -143297006 + L2 LINE L2 2407 2552 -762 426 292 42 19 chr4 59031366 59031582 -143296765 + L1M4 LINE L1 4834 5054 -1794 3111 105 143 53 chr4 59031698 59031952 -143296395 - LTR10E LTR ERV1 0 633 403 1684 97 9 0 chr4 59031952 59032179 -143296168 - AluSp SINE Alu 0 313 85 3111 105 143 53 chr4 59032179 59032505 -143295842 - LTR10E LTR ERV1 -230 403 1 3213 217 8 8 chr4 59032658 59033410 -143294937 - Harlequin LTR ERV1 -743 5906 3375 1660 191 44 0 chr4 59033464 59033779 -143294568 - Harlequin LTR ERV1 -3887 3009 2681 567 146 37 73 chr4 59033908 59034072 -143294275 + AluSp SINE Alu 143 300 -13 198 71 0 0 chr4 59034126 59034154 -143294193 + (CA)n Simple_repeat Simple_repeat 2 29 0 2187 97 0 44 chr4 59034331 59034652 -143293695 + AluY SINE Alu 2 308 -3 287 354 31 0 chr4 59034952 59035048 -143293299 + L2 LINE L2 3193 3291 -22 332 294 101 32 chr4 59035385 59035633 -143292714 - L1ME4a LINE L1 -152 5969 5705 1124 123 6 0 chr4 59036947 59037110 -143291237 + AluJo SINE Alu 1 164 -148 378 287 189 39 chr4 59037248 59037534 -143290813 + L2 LINE L2 2551 2879 -435 280 237 17 0 chr4 59037658 59037717 -143290630 + L2 LINE L2 3254 3313 0 319 264 118 18 chr4 59037805 59037915 -143290432 - L2 LINE L2 -2 3270 3150 321 219 41 0 chr4 59037917 59037990 -143290357 - Charlie4a DNA MER1_type 0 508 433 919 160 269 42 chr4 59038759 59038997 -143289350 - AluY SINE Alu -9 292 1 2112 130 3 0 chr4 59039056 59039356 -143288991 + AluSq SINE Alu 1 301 -12 2059 124 7 16 chr4 59039360 59039667 -143288680 + AluSx SINE Alu 1 304 -8 874 195 114 38 chr4 59039671 59039933 -143288414 + L1MA7 LINE L1 6010 6291 0 1339 203 84 32 chr4 59039943 59040045 -143288302 - Charlie4a DNA MER1_type -1541 420 325 2218 105 3 0 chr4 59040045 59040340 -143288007 - AluSq SINE Alu -17 296 1 1339 203 84 32 chr4 59040340 59040617 -143287730 - Charlie4a DNA MER1_type -1636 325 21 21 0 0 0 chr4 59040873 59040894 -143287453 + AT_rich Low_complexity Low_complexity 1 21 0 2075 137 0 3 chr4 59041092 59041392 -143286955 + AluSx SINE Alu 1 299 -13 363 306 63 32 chr4 59041575 59041827 -143286520 + MIR SINE MIR 3 262 0 8326 60 14 1 chr4 59042632 59044415 -143283932 + L1PA6 LINE L1 4356 6152 -2 572 170 9 9 chr4 59044561 59044667 -143283680 + MER41A LTR ERV1 361 466 -88 256 114 0 0 chr4 59044816 59044851 -143283496 + MER41B LTR ERV1 311 345 -290 355 312 7 43 chr4 59045370 59045511 -143282836 + MIR SINE MIR 71 206 -56 2609 141 23 7 chr4 59045545 59045972 -143282375 + L1MC2 LINE L1 5613 6046 -298 2399 93 0 0 chr4 59045972 59046273 -143282074 - AluSx SINE Alu -11 301 1 383 227 121 23 chr4 59046348 59046480 -143281867 + MLT1J LTR MaLR 340 484 -27 452 281 58 27 chr4 59046790 59046823 -143281524 + L1ME4a LINE L1 5690 5721 -400 7162 121 30 63 chr4 59046823 59047075 -143281272 - Tigger3b DNA MER2_type -1797 1231 972 2322 109 3 0 chr4 59047075 59047379 -143280968 + AluSq SINE Alu 1 305 -8 7162 121 30 63 chr4 59047379 59048102 -143280245 - Tigger3b DNA MER2_type -2056 972 305 2004 142 3 7 chr4 59048102 59048411 -143279936 + AluJo SINE Alu 1 308 -4 7162 121 30 63 chr4 59048411 59048707 -143279640 - Tigger3b DNA MER2_type -2723 305 1 452 281 58 27 chr4 59048707 59048897 -143279450 + L1ME4a LINE L1 5721 5920 -201 512 288 74 0 chr4 59048941 59049104 -143279243 - MIR SINE MIR -7 255 81 213 94 0 0 chr4 59049309 59049341 -143279006 + (CA)n Simple_repeat Simple_repeat 1 32 0 342 0 0 0 chr4 59049594 59049632 -143278715 + (CA)n Simple_repeat Simple_repeat 2 39 0 837 281 121 56 chr4 59050878 59051245 -143277102 + MLT1K LTR MaLR 82 487 -101 1160 225 143 52 chr4 59051245 59051708 -143276639 + MLT1D LTR MaLR 1 505 0 837 281 121 56 chr4 59051708 59051802 -143276545 + MLT1K LTR MaLR 487 573 -15 26 0 0 0 chr4 59051803 59051829 -143276518 + AT_rich Low_complexity Low_complexity 1 26 0 2207 152 33 30 chr4 59052169 59052532 -143275815 + THE1B LTR MaLR 1 364 0 2093 88 4 0 chr4 59053890 59054153 -143274194 + AluY SINE Alu 34 297 -14 424 278 27 87 chr4 59054519 59054554 -143273793 + L1MC/D LINE L1 5403 5439 -682 2018 120 7 3 chr4 59054554 59054863 -143273484 - AluSx SINE Alu 0 310 1 424 278 27 87 chr4 59054863 59055057 -143273290 + L1MC/D LINE L1 5439 5593 -528 282 251 128 103 chr4 59055290 59055365 -143272982 + L1MC/D LINE L1 5679 5751 -2057 2410 93 3 0 chr4 59055365 59055666 -143272681 + AluSc SINE Alu 1 302 -7 282 251 128 103 chr4 59055666 59055785 -143272562 + L1MC/D LINE L1 5751 5878 -1930 3988 131 7 2 chr4 59056207 59056801 -143271546 - L1PA15 LINE L1 -8 6157 5561 1086 107 0 0 chr4 59056955 59057132 -143271215 + (G)n Simple_repeat Simple_repeat 1 177 0 474 155 0 0 chr4 59057144 59057260 -143271087 + G-rich Low_complexity Low_complexity 1 116 0 277 224 0 28 chr4 59057323 59057430 -143270917 + G-rich Low_complexity Low_complexity 3 106 0 324 298 11 0 chr4 59057484 59057578 -143270769 + MIR SINE MIR 52 146 -116 263 276 163 49 chr4 59057880 59058107 -143270240 - MIR SINE MIR -11 251 3 257 49 73 0 chr4 59058210 59058251 -143270096 + CT-rich Low_complexity Low_complexity 4 47 0 260 260 0 39 chr4 59058795 59058872 -143269475 + GA-rich Low_complexity Low_complexity 3 76 0 392 306 70 25 chr4 59059392 59059591 -143268756 - MIR SINE MIR -6 256 49 237 108 0 0 chr4 59059600 59059637 -143268710 + (CA)n Simple_repeat Simple_repeat 1 37 0 1543 134 0 0 chr4 59059853 59060076 -143268271 + AluY SINE Alu 68 290 -21 551 338 34 0 chr4 59060311 59060515 -143267832 + MIR SINE MIR 2 212 -50 219 170 0 0 chr4 59061126 59061173 -143267174 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 1280 144 55 31 chr4 59061356 59061647 -143266700 + MER33 DNA MER1_type 26 323 -1 428 200 0 40 chr4 59061663 59061763 -143266584 + MER5A DNA MER1_type 9 104 -85 201 196 0 22 chr4 59061823 59061869 -143266478 - MIR3 SINE MIR -48 160 116 205 200 0 0 chr4 59063076 59063116 -143265231 + (TAA)n Simple_repeat Simple_repeat 3 42 0 1674 264 163 21 chr4 59063206 59064245 -143264102 - L2 LINE L2 0 3313 2118 1653 199 33 0 chr4 59064469 59064771 -143263576 + AluJb SINE Alu 1 312 0 585 76 0 0 chr4 59064771 59064850 -143263497 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 2464 188 72 8 chr4 59065081 59065585 -143262762 - L1MB7 LINE L1 -278 5906 5358 1902 126 26 0 chr4 59065585 59065855 -143262492 - AluSx SINE Alu -22 290 14 2464 188 72 8 chr4 59065855 59065899 -143262448 - L1MB7 LINE L1 -826 5358 5318 319 268 116 26 chr4 59066329 59066519 -143261828 - HAL1 LINE L1 -887 1620 1414 906 190 0 6 chr4 59066594 59066752 -143261595 - AluJb SINE Alu -20 292 136 3594 124 14 38 chr4 59067062 59067636 -143260711 + MER61E LTR ERV1 1 560 -9 1935 135 3 55 chr4 59068549 59068860 -143259487 + AluSx SINE Alu 1 295 -17 2255 115 0 16 chr4 59068862 59069176 -143259171 + AluSx SINE Alu 1 309 -3 250 143 41 0 chr4 59069193 59069242 -143259105 + Alu SINE Alu 252 302 0 183 265 47 125 chr4 59069243 59069272 -143259075 - L2 LINE L2 -136 3177 3147 2274 113 7 0 chr4 59069272 59069572 -143258775 + AluSx SINE Alu 1 302 -10 183 265 47 125 chr4 59069572 59069821 -143258526 - L2 LINE L2 -166 3147 2921 2406 106 0 0 chr4 59069908 59070219 -143258128 - AluSq SINE Alu -2 311 1 1024 257 138 2 chr4 59070287 59070700 -143257647 - L2 LINE L2 -575 2739 2271 2294 107 3 0 chr4 59070962 59071262 -143257085 - AluSx SINE Alu -11 301 1 2275 121 0 3 chr4 59071795 59072102 -143256245 - AluSg SINE Alu -3 307 2 348 259 57 8 chr4 59072236 59072363 -143255984 + MIR SINE MIR 24 156 -54 2234 115 3 0 chr4 59072566 59072871 -143255476 + AluSx SINE Alu 1 306 -6 2136 105 10 7 chr4 59072875 59073171 -143255176 + AluSg SINE Alu 1 297 -13 2205 158 49 23 chr4 59074154 59074540 -143253807 + MER57A LTR ERV1 8 403 0 2281 100 3 0 chr4 59074753 59075063 -143253284 + AluSp SINE Alu 1 311 -2 181 233 23 0 chr4 59075232 59075275 -143253072 + MIR SINE MIR 198 241 -21 521 106 71 0 chr4 59077774 59077887 -143250460 + CT-rich Low_complexity Low_complexity 2 122 0 1458 137 52 33 chr4 59077895 59078166 -143250181 - AluJo SINE Alu -6 306 31 377 319 84 16 chr4 59078269 59078460 -143249887 + L3 LINE CR1 1332 1535 -42 22 35 0 0 chr4 59079870 59079899 -143248448 + AT_rich Low_complexity Low_complexity 1 29 0 494 125 0 0 chr4 59079920 59079992 -143248355 - FRAM SINE Alu -77 99 28 22 80 0 0 chr4 59080103 59080153 -143248194 + AT_rich Low_complexity Low_complexity 1 50 0 869 145 0 0 chr4 59080168 59080299 -143248048 - FLAM_C SINE Alu -2 131 1 375 90 51 51 chr4 59080386 59080563 -143247784 + (TATAA)n Simple_repeat Simple_repeat 3 179 0 1500 163 53 0 chr4 59080757 59081002 -143247345 + AluJb SINE Alu 1 258 -54 1663 175 32 26 chr4 59081021 59081330 -143247017 - AluJo SINE Alu -1 311 1 265 314 47 0 chr4 59081978 59082063 -143246284 + Charlie8 DNA MER1_type 5 93 -2324 1580 196 17 3 chr4 59082063 59082359 -143245988 + MLT2C1 LTR ERVL 1 300 -97 347 67 3 0 chr4 59082360 59082409 -143245938 + MLT2C1 LTR ERVL 357 397 0 1115 269 140 24 chr4 59082414 59082872 -143245475 + MLT1J LTR MaLR 1 511 0 554 275 11 33 chr4 59082872 59083045 -143245302 + Charlie8 DNA MER1_type 93 261 -2156 527 240 67 6 chr4 59083307 59083486 -143244861 - AluSg1 SINE Alu -116 193 4 2373 90 0 3 chr4 59084588 59084889 -143243458 + AluSq SINE Alu 1 300 -13 33 80 0 0 chr4 59084942 59085017 -143243330 + AT_rich Low_complexity Low_complexity 1 75 0 192 77 0 0 chr4 59085615 59085641 -143242706 + (A)n Simple_repeat Simple_repeat 1 26 0 2575 48 3 0 chr4 59086038 59086332 -143242015 + AluY SINE Alu 1 295 -16 2024 144 10 0 chr4 59086381 59086680 -143241667 + AluSx SINE Alu 1 302 -10 372 274 43 8 chr4 59087298 59087415 -143240932 + MIR3 SINE MIR 87 207 -1 2081 114 10 7 chr4 59087559 59087849 -143240498 + AluSx SINE Alu 1 291 -21 952 105 8 8 chr4 59087949 59088082 -143240265 - AluSq/x SINE Alu -179 133 1 2179 117 3 0 chr4 59088084 59088394 -143239953 - AluSx SINE Alu 0 311 1 849 254 66 13 chr4 59088412 59088640 -143239707 - MIR SINE MIR -10 252 13 1774 190 0 3 chr4 59088802 59089102 -143239245 + AluJb SINE Alu 1 299 -13 378 0 0 0 chr4 59089786 59089828 -143238519 + (CA)n Simple_repeat Simple_repeat 1 42 0 197 152 0 0 chr4 59089880 59089913 -143238434 + L2 LINE L2 3232 3264 -8 1813 145 0 34 chr4 59089950 59090246 -143238101 + AluJb SINE Alu 1 286 -26 21 0 0 0 chr4 59090246 59090267 -143238080 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 59090478 59090499 -143237848 + AT_rich Low_complexity Low_complexity 1 21 0 2288 106 0 7 chr4 59091005 59091307 -143237040 - AluSx SINE Alu -10 302 3 183 114 0 0 chr4 59093172 59093207 -143235140 + (A)n Simple_repeat Simple_repeat 1 35 0 1506 238 64 24 chr4 59093391 59093766 -143234581 + L2 LINE L2 864 1338 -1976 2000 110 10 13 chr4 59093766 59094066 -143234281 - AluSx SINE Alu -13 299 1 1506 238 64 24 chr4 59094066 59094254 -143234093 + L2 LINE L2 1338 1517 -1797 729 120 56 24 chr4 59094266 59094391 -143233956 - FLAM_C SINE Alu -4 129 1 1451 190 30 27 chr4 59094399 59094730 -143233617 - LTR37A LTR ERV1 -18 408 77 3083 266 98 40 chr4 59094804 59094978 -143233369 + L2 LINE L2 1494 1656 -1657 1991 139 3 3 chr4 59094978 59095265 -143233082 - AluJb SINE Alu -25 287 1 2348 97 3 0 chr4 59095273 59095572 -143232775 - AluSp SINE Alu -13 300 1 3083 266 98 40 chr4 59095572 59095586 -143232761 + L2 LINE L2 1662 1674 -1639 2094 131 7 7 chr4 59095586 59095892 -143232455 - AluSx SINE Alu -6 306 1 3083 266 98 40 chr4 59095892 59097144 -143231203 + L2 LINE L2 1674 3043 -270 1341 263 61 56 chr4 59097144 59097416 -143230931 - MLT1E LTR MaLR 0 593 324 2200 138 0 0 chr4 59097416 59097727 -143230620 + AluJb SINE Alu 1 311 -1 1341 263 61 56 chr4 59097727 59098044 -143230303 - MLT1E LTR MaLR -269 324 1 3083 266 98 40 chr4 59098044 59098153 -143230194 + L2 LINE L2 3043 3144 -169 284 203 43 14 chr4 59098171 59098240 -143230107 + MLT1G1 LTR MaLR 514 584 -11 3355 83 16 5 chr4 59098275 59098723 -143229624 - LTR3b LTR ERVK -47 453 1 432 197 79 79 chr4 59098735 59098887 -143229460 + L2 LINE L2 3160 3311 -2 1177 138 0 0 chr4 59099144 59099311 -143229036 - AluJb SINE Alu -9 303 137 2143 112 14 3 chr4 59099570 59099866 -143228481 - AluSq SINE Alu -14 299 1 23 0 0 0 chr4 59100474 59100497 -143227850 + AT_rich Low_complexity Low_complexity 1 23 0 263 311 49 33 chr4 59100591 59100713 -143227634 - L2 LINE L2 0 3272 3149 5666 178 109 53 chr4 59100876 59102325 -143226022 + MER45R DNA AcHobo 48 1577 -4 2388 104 0 0 chr4 59102512 59102821 -143225526 + AluSg SINE Alu 1 309 -1 1787 159 3 14 chr4 59102960 59103250 -143225097 + AluJb SINE Alu 1 287 -25 270 0 0 0 chr4 59103966 59103996 -143224351 + (CA)n Simple_repeat Simple_repeat 1 30 0 209 152 0 0 chr4 59104048 59104081 -143224266 + L2 LINE L2 3232 3264 -8 1706 150 0 38 chr4 59104118 59104411 -143223936 + AluJb SINE Alu 1 282 -30 22 0 0 0 chr4 59104414 59104436 -143223911 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 59104647 59104668 -143223679 + AT_rich Low_complexity Low_complexity 1 21 0 2185 102 0 13 chr4 59105174 59105478 -143222869 - AluSg SINE Alu -10 300 1 222 37 0 0 chr4 59105875 59105902 -143222445 + (T)n Simple_repeat Simple_repeat 1 27 0 195 42 0 0 chr4 59106400 59106424 -143221923 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 1553 128 132 25 chr4 59106424 59106705 -143221642 - AluSx SINE Alu -1 311 1 1932 122 0 46 chr4 59106817 59107120 -143221227 - AluJo SINE Alu -15 297 9 795 200 72 17 chr4 59107586 59107766 -143220581 + MER6B DNA MER2_type 2 191 -19 384 228 73 15 chr4 59108907 59109043 -143219304 - L1MC4a LINE L1 -1926 5882 5739 1859 143 23 10 chr4 59109046 59109346 -143219001 - AluJb SINE Alu -8 304 1 1019 172 59 41 chr4 59109685 59109975 -143218372 + MER33 DNA MER1_type 1 295 -29 764 216 132 31 chr4 59110198 59110425 -143217922 - MIR SINE MIR -7 255 6 1613 180 65 6 chr4 59110688 59111010 -143217337 - MER7A DNA MER2_type -7 339 1 192 293 172 20 chr4 59111011 59111110 -143217237 - MIR SINE MIR -90 172 59 21 0 0 0 chr4 59111312 59111333 -143217014 + AT_rich Low_complexity Low_complexity 1 21 0 424 164 0 0 chr4 59111368 59111435 -143216912 - AluJ/FRAM SINE Alu -26 286 220 253 366 149 25 chr4 59111853 59111893 -143216454 - L3 LINE CR1 -17 1560 1526 861 197 67 24 chr4 59111893 59112101 -143216246 - MER20 DNA MER1_type 0 219 3 253 366 149 25 chr4 59112101 59112295 -143216052 - L3 LINE CR1 -51 1526 1297 236 270 16 0 chr4 59112441 59112504 -143215843 + CT-rich Low_complexity Low_complexity 4 67 0 199 333 0 60 chr4 59112626 59112710 -143215637 - L3 LINE CR1 -479 1098 1020 912 134 47 7 chr4 59112807 59112956 -143215391 - AluSq SINE Alu -18 295 141 309 318 67 54 chr4 59112974 59113197 -143215150 - L3 LINE CR1 -731 846 621 2334 110 0 7 chr4 59113238 59113539 -143214808 + AluSx SINE Alu 1 299 -13 870 169 130 0 chr4 59113638 59113822 -143214525 + MER46A DNA MER2_type 25 232 -4 359 174 174 0 chr4 59114372 59114481 -143213866 - Charlie2 DNA MER1_type -18 2844 2717 2109 128 10 3 chr4 59114499 59114803 -143213544 + AluSg SINE Alu 1 306 -4 1827 125 18 4 chr4 59115006 59115287 -143213060 + AluSg SINE Alu 20 304 -6 668 177 137 86 chr4 59115304 59115506 -143212841 - Charlie2 DNA MER1_type -182 2680 2490 631 111 0 10 chr4 59115506 59115605 -143212742 + HY3 scRNA scRNA 2 99 -2 668 177 137 86 chr4 59115605 59115832 -143212515 - Charlie2 DNA MER1_type -372 2490 2229 182 62 31 0 chr4 59115832 59115864 -143212483 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1711 177 0 0 chr4 59115867 59116132 -143212215 - AluJo SINE Alu -30 282 18 2036 151 3 3 chr4 59116172 59116484 -143211863 - AluSx SINE Alu 0 312 1 330 244 44 46 chr4 59116508 59116634 -143211713 - L1MC4 LINE L1 -8 8032 7881 2411 67 0 7 chr4 59116856 59117153 -143211194 + AluY SINE Alu 1 295 -16 1344 78 17 0 chr4 59117313 59117492 -143210855 - L1PA8 LINE L1 -4 6168 5987 2528 251 53 39 chr4 59117523 59118523 -143209824 - L1MC4 LINE L1 -381 7661 6648 1989 146 10 10 chr4 59118716 59119025 -143209322 - AluJb SINE Alu -3 309 1 652 171 65 8 chr4 59119080 59119203 -143209144 - FLAM_C SINE Alu -13 130 1 23 54 0 0 chr4 59119372 59119409 -143208938 + AT_rich Low_complexity Low_complexity 1 37 0 195 285 219 24 chr4 59119555 59119678 -143208669 - L3 LINE CR1 -5 1572 1426 183 318 45 45 chr4 59120358 59120446 -143207901 + L2 LINE L2 3153 3240 -32 1057 125 12 6 chr4 59121245 59121405 -143206942 + AluJb SINE Alu 135 295 -17 2035 126 6 22 chr4 59121634 59121951 -143206396 + AluSx SINE Alu 1 312 0 456 210 48 40 chr4 59122036 59122160 -143206187 - AluJb SINE Alu -187 125 1 248 284 64 37 chr4 59122215 59122324 -143206023 - MIR3 SINE MIR -7 201 90 1136 135 0 0 chr4 59122814 59122977 -143205370 + AluSg/x SINE Alu 132 294 -18 269 26 0 26 chr4 59122993 59123032 -143205315 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 211 275 175 42 chr4 59123319 59123439 -143204908 + MIR SINE MIR 96 231 -31 1898 88 113 4 chr4 59123783 59124057 -143204290 + AluSx SINE Alu 1 304 -8 1837 144 11 0 chr4 59124158 59124442 -143203905 - AluJb SINE Alu -1 311 25 1971 139 18 0 chr4 59125139 59125420 -143202927 - AluSx SINE Alu -22 290 5 2015 110 45 3 chr4 59125512 59125803 -143202544 - AluY SINE Alu -8 303 1 1209 202 38 45 chr4 59125805 59126072 -143202275 - AluJo SINE Alu -17 295 31 263 390 31 38 chr4 59126082 59126311 -143202036 + L2 LINE L2 2463 2691 -623 1768 165 29 0 chr4 59126311 59126590 -143201757 - AluJo SINE Alu -25 287 1 263 390 31 38 chr4 59126590 59126652 -143201695 + L2 LINE L2 2691 2752 -562 213 244 282 13 chr4 59129241 59129319 -143199028 - MIR SINE MIR -157 105 7 2189 84 13 17 chr4 59129904 59130202 -143198145 - AluSg SINE Alu -13 297 1 2036 127 0 17 chr4 59130212 59130512 -143197835 - AluSx SINE Alu -17 295 1 189 0 0 0 chr4 59131837 59131858 -143196489 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr4 59132924 59132946 -143195401 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr4 59134212 59134255 -143194092 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 59135338 59135359 -143192988 + AT_rich Low_complexity Low_complexity 1 21 0 621 247 47 26 chr4 59138882 59139072 -143189275 + MIR SINE MIR 13 206 -56 295 290 32 48 chr4 59139148 59139272 -143189075 + MIR SINE MIR 8 129 -133 180 0 0 0 chr4 59139756 59139776 -143188571 + (T)n Simple_repeat Simple_repeat 1 20 0 425 286 172 10 chr4 59140451 59140654 -143187693 - MIR SINE MIR -24 238 3 208 200 29 29 chr4 59141207 59141277 -143187070 + (CTG)n Simple_repeat Simple_repeat 1 70 0 4332 144 55 41 chr4 59141631 59142880 -143185467 + L1MB3 LINE L1 4927 6180 -3 240 59 0 0 chr4 59143828 59143862 -143184485 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3926 88 88 2 chr4 59144049 59144663 -143183684 + L1PB3 LINE L1 5411 6077 -77 2305 102 7 0 chr4 59146055 59146360 -143181987 + AluSq SINE Alu 1 307 -6 22 0 0 0 chr4 59147211 59147233 -143181114 + AT_rich Low_complexity Low_complexity 1 22 0 467 261 25 12 chr4 59147768 59147929 -143180418 + LTR41 LTR ERVL 21 183 -590 256 175 38 62 chr4 59148254 59148334 -143180013 + LTR41 LTR ERVL 506 583 -190 495 145 71 74 chr4 59148370 59148439 -143179908 + LTR41 LTR ERVL 584 652 -143 1908 171 0 16 chr4 59148439 59148755 -143179592 - AluJo SINE Alu -1 311 1 495 145 71 74 chr4 59148755 59148887 -143179460 + LTR41 LTR ERVL 652 792 -3 1447 167 63 0 chr4 59148958 59149197 -143179150 - AluJb SINE Alu -7 305 52 22 35 0 0 chr4 59149896 59149925 -143178422 + AT_rich Low_complexity Low_complexity 1 29 0 1959 139 10 7 chr4 59149944 59150239 -143178108 + AluSx SINE Alu 1 296 -16 209 333 51 60 chr4 59150840 59150957 -143177390 + L2 LINE L2 2957 3072 -200 590 203 43 14 chr4 59151265 59151403 -143176944 - MER20B DNA MER1_type -607 176 35 396 103 0 0 chr4 59151440 59151498 -143176849 + (TG)n Simple_repeat Simple_repeat 1 58 0 334 161 48 0 chr4 59151498 59151560 -143176787 - AluY SINE Alu -109 192 128 434 134 24 102 chr4 59153292 59153339 -143175008 + L1M4 LINE L1 4944 4993 -1153 2076 125 3 3 chr4 59153339 59153635 -143174712 + AluSq SINE Alu 1 296 -17 434 134 24 102 chr4 59153635 59153714 -143174633 + L1M4 LINE L1 4993 5060 -1086 309 250 29 0 chr4 59153719 59153787 -143174560 + FRAM/FAM SINE Alu 13 82 -84 1652 240 135 32 chr4 59153814 59154413 -143173934 + L2 LINE L2 1616 2276 -1038 259 299 34 34 chr4 59154415 59154532 -143173815 - L2 LINE L2 -728 2586 2470 445 266 44 0 chr4 59154688 59154801 -143173546 + L2 LINE L2 3196 3313 0 1787 234 103 27 chr4 59154905 59155456 -143172891 + MLT1E LTR MaLR 1 593 0 286 324 78 49 chr4 59155489 59155693 -143172654 + MIR SINE MIR 47 256 -6 22 0 0 0 chr4 59155747 59155769 -143172578 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr4 59155870 59155899 -143172448 + AT_rich Low_complexity Low_complexity 1 29 0 2235 121 3 0 chr4 59157187 59157493 -143170854 + AluSx SINE Alu 1 307 -5 243 211 227 31 chr4 59157500 59157628 -143170719 + MER103 DNA DNA 8 160 -6 201 338 54 0 chr4 59157731 59157805 -143170542 - MIR SINE MIR -60 148 71 767 256 50 6 chr4 59158115 59158295 -143170052 + MIR SINE MIR 46 233 -29 26 0 0 0 chr4 59159159 59159185 -143169162 + AT_rich Low_complexity Low_complexity 1 26 0 1619 114 5 0 chr4 59159235 59159455 -143168892 + AluSq SINE Alu 1 221 -92 1743 156 7 11 chr4 59159540 59159822 -143168525 - AluJo SINE Alu -19 293 13 209 301 167 46 chr4 59159972 59160344 -143168003 + L2 LINE L2 2250 2666 -648 731 248 87 50 chr4 59160698 59160940 -143167407 + MIR SINE MIR 12 262 0 1700 164 36 4 chr4 59161030 59161310 -143167037 - AluJo SINE Alu -23 289 1 1725 174 31 0 chr4 59162614 59162902 -143165445 - AluJo SINE Alu -15 297 1 182 350 196 10 chr4 59163327 59163521 -143164826 + L2 LINE L2 2288 2517 -797 1724 161 10 23 chr4 59163899 59164198 -143164149 - AluJb SINE Alu -17 295 1 309 337 64 13 chr4 59164420 59164664 -143163683 + ERVL LTR ERVL 1502 1794 -3899 1857 145 28 7 chr4 59165258 59165541 -143162806 - AluSx SINE Alu -14 298 10 185 320 133 13 chr4 59165569 59165719 -143162628 + L2 LINE L2 2152 2319 -995 25 31 0 0 chr4 59166224 59166256 -143162091 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr4 59166349 59166378 -143161969 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 59166508 59166530 -143161817 + AT_rich Low_complexity Low_complexity 1 22 0 362 91 18 0 chr4 59167776 59167831 -143160516 + MADE1 DNA Mariner 25 80 0 24 32 0 0 chr4 59168013 59168044 -143160303 + AT_rich Low_complexity Low_complexity 1 31 0 1527 149 63 43 chr4 59168071 59168373 -143159974 - MER2 DNA MER2_type -36 309 2 553 262 6 6 chr4 59168645 59168828 -143159519 + AluSx SINE Alu 1 183 -129 2596 88 16 11 chr4 59169131 59169504 -143158843 + THE1C LTR MaLR 1 375 0 581 174 0 9 chr4 59170071 59170186 -143158161 + L1MC3 LINE L1 7670 7783 -2 246 247 215 11 chr4 59170357 59170450 -143157897 - L2 LINE L2 -1 3312 3201 710 191 0 29 chr4 59171189 59171325 -143157022 - AluJo SINE Alu -178 134 3 237 227 23 0 chr4 59171450 59171494 -143156853 + L2 LINE L2 3209 3253 -19 6285 137 60 33 chr4 59171878 59172197 -143156150 + Tigger3b DNA MER2_type 7 316 -2712 1687 114 117 8 chr4 59172197 59172461 -143155886 - AluSx SINE Alu -17 295 3 6285 137 60 33 chr4 59172461 59172788 -143155559 + Tigger3b DNA MER2_type 316 633 -2395 1532 175 4 4 chr4 59172788 59173040 -143155307 - AluJb SINE Alu -25 287 36 6285 137 60 33 chr4 59173040 59173584 -143154763 + Tigger3b DNA MER2_type 633 1230 -1 1802 160 11 3 chr4 59174860 59175142 -143153205 + AluJb SINE Alu 3 286 -26 227 407 53 0 chr4 59175582 59175695 -143152652 + L2 LINE L2 3108 3226 -46 1895 137 14 3 chr4 59176024 59176308 -143152039 + AluSx SINE Alu 14 300 -12 182 292 0 69 chr4 59176314 59176386 -143151961 + MIR SINE MIR 114 180 -82 249 259 0 0 chr4 59176393 59176451 -143151896 + MIR SINE MIR 149 206 -56 13832 115 74 20 chr4 59176666 59178959 -143149388 + Tigger1 DNA MER2_type 1 2418 0 183 128 0 26 chr4 59180464 59180503 -143147844 - L2 LINE L2 -1 3312 3275 264 332 182 38 chr4 59180581 59181207 -143147140 - L2 LINE L2 -739 2575 1860 246 341 275 28 chr4 59181581 59181865 -143146482 + L2 LINE L2 2919 3272 0 219 226 32 0 chr4 59182753 59182815 -143145532 + (TTTA)n Simple_repeat Simple_repeat 4 67 0 21 0 0 0 chr4 59183219 59183240 -143145107 + AT_rich Low_complexity Low_complexity 1 21 0 246 282 145 26 chr4 59183356 59183448 -143144899 - L2 LINE L2 -4 3309 3199 1880 181 0 3 chr4 59183448 59183758 -143144589 - AluJo SINE Alu -3 309 1 246 282 145 26 chr4 59183758 59183782 -143144565 - L2 LINE L2 -114 3199 3179 2311 75 3 3 chr4 59183801 59184094 -143144253 + AluY SINE Alu 1 293 -18 418 167 36 24 chr4 59184792 59184876 -143143471 + MIR SINE MIR 57 141 -121 430 163 10 51 chr4 59184962 59185060 -143143287 - HsTC2 DNA Tc2 -4 1894 1801 823 157 36 18 chr4 59185100 59185266 -143143081 - L1PA16 LINE L1 -3 6163 5995 25 31 0 0 chr4 59185698 59185730 -143142617 + AT_rich Low_complexity Low_complexity 1 32 0 331 280 75 0 chr4 59186157 59186250 -143142097 - L2 LINE L2 0 3313 3214 261 252 304 15 chr4 59186447 59186582 -143141765 + MER5A DNA MER1_type 13 186 -3 607 167 0 61 chr4 59186915 59187029 -143141318 + MER46A DNA MER2_type 2 108 -128 1035 164 0 0 chr4 59187196 59187361 -143140986 - FRAM SINE Alu 0 166 2 226 294 0 29 chr4 59187486 59187554 -143140793 - L3 LINE CR1 -1 1576 1511 2071 115 0 3 chr4 59187981 59188269 -143140078 - AluSx SINE Alu -23 289 3 1099 103 11 0 chr4 59188730 59188904 -143139443 + L1MA2 LINE L1 6129 6304 0 4611 260 156 19 chr4 59189058 59191005 -143137342 - HAL1 LINE L1 -287 2220 9 1009 295 192 16 chr4 59191009 59191504 -143136843 + L2 LINE L2 1821 2402 -912 707 309 66 64 chr4 59191488 59191759 -143136588 + L2 LINE L2 2817 3091 -222 * 1713 174 11 7 chr4 59191759 59192041 -143136306 - AluJo SINE Alu -29 283 1 707 309 66 64 chr4 59192041 59192238 -143136109 + L2 LINE L2 3091 3286 -27 30 0 0 0 chr4 59192535 59192565 -143135782 + AT_rich Low_complexity Low_complexity 1 30 0 3793 213 84 54 chr4 59192674 59193513 -143134834 + L1M4c LINE L1 1974 2786 -3596 1415 181 97 25 chr4 59193513 59193834 -143134513 + MER2 DNA MER2_type 1 344 0 3793 213 84 54 chr4 59193834 59194654 -143133693 + L1M4c LINE L1 2786 3698 -2684 648 194 97 0 chr4 59194654 59194798 -143133549 + L1ME3 LINE L1 5697 5854 -308 2001 186 41 45 chr4 59194847 59195406 -143132941 + L1M4c LINE L1 3662 4218 -2164 340 264 139 69 chr4 59195457 59195569 -143132778 + L1ME4a LINE L1 5599 5725 -396 2216 130 0 0 chr4 59195569 59195876 -143132471 + AluSx SINE Alu 1 307 -5 340 264 139 69 chr4 59195876 59195907 -143132440 + L1ME4a LINE L1 5725 5752 -369 435 198 116 8 chr4 59195949 59196070 -143132277 + L1ME4a LINE L1 5983 6116 -5 30 0 0 0 chr4 59196240 59196270 -143132077 + AT_rich Low_complexity Low_complexity 1 30 0 2153 206 9 53 chr4 59197275 59197522 -143130825 + MLT1D LTR MaLR 1 214 -291 1305 62 36 31 chr4 59197522 59197715 -143130632 + L1PB1 LINE L1 5951 6144 -7 2153 206 9 53 chr4 59197715 59197995 -143130352 + MLT1D LTR MaLR 214 505 0 1923 267 80 47 chr4 59198014 59198830 -143129517 + L2 LINE L2 30 872 -2442 2380 90 0 6 chr4 59198906 59199218 -143129129 + AluSx SINE Alu 2 311 -1 1712 191 104 47 chr4 59200008 59200478 -143127869 - MLT1D LTR MaLR -7 498 2 207 0 0 0 chr4 59201602 59201625 -143126722 + (TTA)n Simple_repeat Simple_repeat 2 24 0 958 245 71 20 chr4 59201916 59202308 -143126039 - L1ME LINE L1 -5097 1433 1022 701 130 65 0 chr4 59202308 59202416 -143125931 - MER1B DNA MER1_type 0 339 225 1508 133 0 30 chr4 59202425 59202658 -143125689 - MER1B DNA MER1_type -74 265 40 420 356 67 41 chr4 59202734 59203004 -143125343 - L1ME LINE L1 -5563 967 691 308 341 48 52 chr4 59203073 59203325 -143125022 - L1ME LINE L1 -6214 326 76 1685 161 7 27 chr4 59203356 59203648 -143124699 - AluJo SINE Alu -26 286 1 1941 149 0 7 chr4 59203863 59204152 -143124195 - AluJo SINE Alu -25 287 1 418 267 20 27 chr4 59204159 59204305 -143124042 - L1MC5 LINE L1 -817 7144 7000 987 175 0 12 chr4 59204415 59204581 -143123766 - FRAM SINE Alu -13 163 1 730 105 0 9 chr4 59204602 59204707 -143123640 - HY1 scRNA scRNA -8 104 1 831 196 20 55 chr4 59204739 59204994 -143123353 - L1MC5 LINE L1 -51 7910 7665 1781 254 81 18 chr4 59204998 59206599 -143121748 + L1ME3 LINE L1 4423 6159 -3 23 0 0 0 chr4 59206641 59206664 -143121683 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr4 59206977 59207001 -143121346 + (A)n Simple_repeat Simple_repeat 1 24 0 2416 69 7 7 chr4 59207001 59207306 -143121041 + AluY SINE Alu 1 305 -6 277 211 66 26 chr4 59207384 59207460 -143120887 + MIR SINE MIR 166 244 -18 1553 115 152 0 chr4 59207902 59208145 -143120202 + AluSg SINE Alu 1 280 -30 1964 161 0 0 chr4 59208380 59208685 -143119662 + AluJb SINE Alu 1 305 -7 971 235 46 72 chr4 59208740 59209196 -143119151 - L1MC4 LINE L1 0 8042 7599 784 189 0 0 chr4 59209213 59209345 -143119002 - FLAM_A SINE Alu -1 132 1 2055 83 48 10 chr4 59209567 59209857 -143118490 - AluSx SINE Alu -9 303 3 1790 166 24 3 chr4 59210030 59210319 -143118028 + AluJb SINE Alu 1 295 -17 1976 145 14 0 chr4 59210329 59210625 -143117722 + AluSx SINE Alu 1 300 -12 345 309 8 49 chr4 59210786 59210909 -143117438 - L2 LINE L2 -5 3267 3150 205 282 54 82 chr4 59210942 59211076 -143117271 - MIR SINE MIR -61 147 32 2237 67 0 0 chr4 59211593 59211861 -143116486 - AluY SINE Alu -14 297 30 1343 141 79 133 chr4 59211877 59212245 -143116102 - MER7A DNA MER2_type 0 346 1 944 209 54 12 chr4 59212245 59212488 -143115859 - MER58 DNA MER1_type -105 110 3 2336 98 0 10 chr4 59213346 59213652 -143114695 + AluSx SINE Alu 4 306 -6 190 255 43 0 chr4 59213893 59213940 -143114407 - MIR SINE MIR -95 113 65 494 219 35 9 chr4 59214165 59214279 -143114068 - MIR SINE MIR -2 260 144 5191 225 61 23 chr4 59214483 59215888 -143112459 - L1MC1 LINE L1 -29 7099 5575 2911 156 63 34 chr4 59215888 59216473 -143111874 + MER7C DNA MER2_type 1 602 0 5191 225 61 23 chr4 59216473 59217273 -143111074 - L1MC1 LINE L1 -1553 5575 4807 695 169 0 0 chr4 59217404 59217528 -143110819 - L1MB7 LINE L1 -21 6163 6040 3869 203 58 29 chr4 59217540 59218401 -143109946 - L1MC1 LINE L1 -2120 4821 3920 2237 82 0 30 chr4 59218401 59218704 -143109643 - AluY SINE Alu -17 294 1 3869 203 58 29 chr4 59218704 59218928 -143109419 - L1MC1 LINE L1 -3021 3920 3704 1409 187 33 30 chr4 59268966 59269128 -143059219 - AluJb SINE Alu -12 300 135 1805 182 3 3 chr4 59269128 59269436 -143058911 - AluJb SINE Alu -4 308 1 1409 187 33 30 chr4 59269436 59269572 -143058775 - AluJb SINE Alu -177 135 1 973 220 108 6 chr4 59269581 59269922 -143058425 - L1MC1 LINE L1 -3180 3761 3386 259 164 0 18 chr4 59269892 59269947 -143058400 - L1MC1 LINE L1 -5079 1344 1291 * 2213 164 61 20 chr4 59270044 59270453 -143057894 - MSTB LTR MaLR 0 426 1 683 74 0 32 chr4 59270938 59271033 -143057314 + AluSg/x SINE Alu 207 298 -11 23 33 0 0 chr4 59271094 59271124 -143057223 + AT_rich Low_complexity Low_complexity 1 30 0 714 177 0 0 chr4 59271224 59271337 -143057010 - AluJb SINE Alu -188 124 12 376 171 68 103 chr4 59271450 59271567 -143056780 - L1ME1 LINE L1 0 6164 6052 1106 175 14 24 chr4 59271632 59271843 -143056504 + AluJo SINE Alu 93 301 -11 594 263 45 6 chr4 59271843 59272022 -143056325 - L1M4 LINE L1 -1512 4634 4449 527 279 140 6 chr4 59272045 59272224 -143056123 - L2 LINE L2 -5 3308 3106 801 211 10 0 chr4 59272338 59272532 -143055815 - L1M4 LINE L1 -2374 3772 3577 2272 122 0 0 chr4 59272848 59273152 -143055195 - AluSx SINE Alu -8 304 1 2348 188 22 17 chr4 59273343 59273886 -143054461 - L1 LINE L1 -1194 4952 4407 1383 160 103 19 chr4 59273915 59274177 -143054170 - AluJo SINE Alu -18 294 11 3270 179 28 51 chr4 59274202 59275040 -143053307 - L1 LINE L1 -1753 4393 3578 2432 98 0 0 chr4 59275040 59275347 -143053000 - AluSc SINE Alu -2 307 1 3270 179 28 51 chr4 59275347 59275441 -143052906 - L1 LINE L1 -2568 3578 3483 294 233 2 0 chr4 59275427 59275506 -143052841 - HAL1b LINE L1 -194 2313 846 * 1111 290 83 36 chr4 59275791 59275980 -143052367 - HAL1 LINE L1 -590 1917 1738 2011 151 0 0 chr4 59275980 59276279 -143052068 - AluSx SINE Alu -13 299 1 1111 290 83 36 chr4 59276279 59276861 -143051486 - HAL1 LINE L1 -769 1738 1110 686 248 99 37 chr4 59276926 59277168 -143051179 + MIR SINE MIR 1 257 -5 510 242 70 75 chr4 59277415 59277746 -143050601 + L1M4 LINE L1 3084 3412 -2734 350 232 113 56 chr4 59277748 59277890 -143050457 + L1MEc LINE L1 815 964 -5432 700 277 127 85 chr4 59277913 59278463 -143049884 + L1M2 LINE L1 1164 1690 -4737 1900 149 7 10 chr4 59278463 59278787 -143049560 + AluSx SINE Alu 1 323 0 700 277 127 85 chr4 59278787 59278808 -143049539 + L1M2 LINE L1 1690 1709 -4718 2004 154 10 0 chr4 59278808 59279114 -143049233 + AluJo SINE Alu 2 310 -2 700 277 127 85 chr4 59279114 59279204 -143049143 + L1M2 LINE L1 1709 2160 -4267 275 241 93 6 chr4 59279206 59279368 -143048979 + L1ME LINE L1 5705 5880 -241 2400 90 0 0 chr4 59279521 59279821 -143048526 - AluSx SINE Alu -12 300 1 282 56 0 0 chr4 59279889 59279925 -143048422 + (GGGGA)n Simple_repeat Simple_repeat 4 39 0 437 137 0 0 chr4 59280108 59280181 -143048166 - 7SK RNA RNA 0 193 121 632 165 0 0 chr4 59280220 59280347 -143048000 - 7SK RNA RNA -65 128 2 2104 101 0 11 chr4 59281572 59281895 -143046452 + AluSx SINE Alu 1 320 0 189 0 0 0 chr4 59281895 59281916 -143046431 + (TTA)n Simple_repeat Simple_repeat 1 21 0 971 185 5 27 chr4 59282512 59282696 -143045651 - AluJo SINE Alu -97 215 36 275 29 0 0 chr4 59283016 59283050 -143045297 + 7SK RNA RNA 134 167 -26 1059 73 0 7 chr4 59283170 59283306 -143045041 + AluSc SINE Alu 160 294 -15 306 0 0 0 chr4 59283679 59283713 -143044634 + (CA)n Simple_repeat Simple_repeat 2 35 0 315 256 0 11 chr4 59284428 59284518 -143043829 - L1MC4a LINE L1 -1915 5893 5805 1080 52 0 0 chr4 59284581 59284717 -143043630 - L1PA5 LINE L1 -3 6151 6016 23 0 0 0 chr4 59285042 59285065 -143043282 + AT_rich Low_complexity Low_complexity 1 23 0 332 299 131 83 chr4 59285400 59286169 -143042178 + L1M2 LINE L1 526 1329 -5520 202 216 0 0 chr4 59286171 59286208 -143042139 + CT-rich Low_complexity Low_complexity 1 37 0 299 290 151 0 chr4 59287598 59287691 -143040656 + MLT1K LTR MaLR 16 122 -466 364 228 180 52 chr4 59287768 59288018 -143040329 + MLT1K LTR MaLR 301 582 -6 2228 189 89 10 chr4 59288125 59288978 -143039369 - L1MCa LINE L1 -3540 2886 1969 819 239 151 51 chr4 59288995 59289109 -143039238 - L1M4 LINE L1 -2255 3891 3790 2263 77 0 3 chr4 59289109 59289395 -143038952 + AluY SINE Alu 1 285 -26 819 239 151 51 chr4 59289395 59289670 -143038677 - L1M4 LINE L1 -2356 3790 3463 441 248 0 19 chr4 59289701 59289806 -143038541 + L1MC/D LINE L1 5521 5623 -2185 560 270 46 0 chr4 59289807 59290003 -143038344 - MER112 DNA MER1_type -55 205 1 1981 156 48 11 chr4 59290381 59290733 -143037614 + MLT1A1 LTR MaLR 1 365 0 1723 193 7 16 chr4 59290929 59291235 -143037112 - AluJo SINE Alu -6 306 4 1970 136 33 0 chr4 59291386 59291688 -143036659 + AluSx SINE Alu 1 312 0 29 47 0 0 chr4 59292432 59292475 -143035872 + AT_rich Low_complexity Low_complexity 1 43 0 2062 131 10 3 chr4 59293094 59293399 -143034948 - AluSq SINE Alu -6 307 1 192 260 20 20 chr4 59293566 59293616 -143034731 + MIR SINE MIR 91 140 -68 761 265 156 86 chr4 59293715 59294435 -143033912 + L1M4 LINE L1 4630 5399 -747 234 188 0 0 chr4 59294515 59294563 -143033784 - L1MC4 LINE L1 -60 7982 7935 250 269 15 0 chr4 59294621 59294688 -143033659 + (CATATA)n Simple_repeat Simple_repeat 6 73 0 275 304 17 0 chr4 59294730 59294845 -143033502 + L1MC4 LINE L1 6896 7012 -1030 2172 92 10 16 chr4 59294893 59295198 -143033149 + AluY SINE Alu 1 303 -8 2933 175 91 148 chr4 59295263 59295986 -143032361 - Looper DNA T2_type 0 1558 795 1968 122 16 44 chr4 59295986 59296306 -143032041 + AluSx SINE Alu 1 311 -1 2933 175 91 148 chr4 59296306 59297069 -143031278 - Looper DNA T2_type -763 795 -10 1444 222 20 26 chr4 59297069 59297375 -143030972 + AluJo SINE Alu 1 304 -8 2933 175 91 148 chr4 59297375 59297388 -143030959 - Looper DNA T2_type -1568 4294967286 158 1653 108 127 15 chr4 59297388 59297648 -143030699 - AluSg1 SINE Alu -20 289 1 2933 175 91 148 chr4 59297648 59297799 -143030548 - Looper DNA T2_type -1399 159 1 1279 139 88 0 chr4 59297822 59298038 -143030309 + MER46A DNA MER2_type 2 236 0 2420 68 3 0 chr4 59298545 59298841 -143029506 + AluY SINE Alu 1 297 -14 460 255 43 11 chr4 59299054 59299238 -143029109 + L1MC5 LINE L1 7712 7901 -60 278 257 109 22 chr4 59299434 59299617 -143028730 + L1MC5 LINE L1 7482 7680 -281 1584 181 45 7 chr4 59299639 59299927 -143028420 + AluJo SINE Alu 1 299 -13 22 25 0 25 chr4 59299934 59299954 -143028393 + AT_rich Low_complexity Low_complexity 1 20 -19 2002 120 42 0 chr4 59299954 59300238 -143028109 + AluSq SINE Alu 1 296 -17 22 25 0 25 chr4 59300238 59300257 -143028090 + AT_rich Low_complexity Low_complexity 20 39 0 1179 222 6 28 chr4 59301169 59301529 -143026818 - L1 LINE L1 -2613 3533 3182 * 1191 214 67 22 chr4 59301511 59301871 -143026476 - L1 LINE L1 -1017 5129 4754 3220 189 4 7 chr4 59301886 59302589 -143025758 - L1 LINE L1 -1559 4587 3887 847 186 35 17 chr4 59302588 59302819 -143025528 - L1 LINE L1 -2934 3212 2978 * 2048 122 7 3 chr4 59303006 59303293 -143025054 - AluSx SINE Alu -24 288 1 656 291 94 25 chr4 59303507 59303751 -143024596 + MIR SINE MIR 2 262 0 225 330 97 25 chr4 59304042 59304177 -143024170 + MIR SINE MIR 10 155 -53 481 295 79 83 chr4 59304314 59305007 -143023340 + L2 LINE L2 2590 3269 -44 768 229 193 16 chr4 59305007 59305146 -143023201 + AluJo SINE Alu 2 115 -187 1675 154 40 11 chr4 59305146 59305418 -143022929 + AluSx SINE Alu 1 280 -32 768 229 193 16 chr4 59305418 59305527 -143022820 + AluJo SINE Alu 115 294 -8 481 295 79 83 chr4 59305527 59305571 -143022776 + L2 LINE L2 3269 3312 -1 5858 85 32 4 chr4 59305666 59306469 -143021878 - LTR12 LTR ERV1 0 826 1 1428 149 112 25 chr4 59307448 59307944 -143020403 - MER51A LTR ERV1 -9 625 1 570 210 238 7 chr4 59308130 59308273 -143020074 - MER5A DNA MER1_type -1 188 13 2213 99 0 3 chr4 59310109 59310417 -143017930 - AluSp SINE Alu 0 307 1 21 57 0 0 chr4 59310497 59310532 -143017815 + AT_rich Low_complexity Low_complexity 1 35 0 2267 96 0 13 chr4 59310897 59311199 -143017148 - AluSx SINE Alu -14 298 1 1977 170 58 11 chr4 59311304 59311681 -143016666 - MSTD LTR MaLR -1 395 1 1025 152 108 0 chr4 59311681 59311885 -143016462 - MSTD-int LTR MaLR 0 1735 1510 2130 90 3 65 chr4 59311885 59312206 -143016141 + AluSx SINE Alu 1 301 -11 359 282 87 22 chr4 59312216 59312276 -143016071 + L1MC4a LINE L1 4902 4957 -1189 2498 99 27 24 chr4 59312276 59312650 -143015697 + THE1C LTR MaLR 1 375 0 359 282 87 22 chr4 59312650 59312901 -143015446 + L1MC4a LINE L1 4957 5233 -913 578 266 121 28 chr4 59313129 59313643 -143014704 + L1MC4a LINE L1 5366 5816 -346 2864 135 92 6 chr4 59313735 59314270 -143014077 + L1MB3 LINE L1 5595 6175 -8 1798 169 0 24 chr4 59314455 59314751 -143013596 + AluJb SINE Alu 1 289 -23 1719 156 47 31 chr4 59314800 59315159 -143013188 + MLT1A1 LTR MaLR 1 365 0 1931 129 0 7 chr4 59315408 59315724 -143012623 + AluSx SINE Alu 1 314 0 980 112 0 0 chr4 59317946 59318071 -143010276 + AluSq/x SINE Alu 1 125 -187 3766 106 19 19 chr4 59318082 59318675 -143009672 - LTR49 LTR ERV1 -2 593 1 3524 141 65 41 chr4 59319371 59319843 -143008504 + LTR8A LTR ERV1 1 497 -230 2848 81 8 0 chr4 59319843 59320215 -143008132 - THE1C LTR MaLR 0 375 1 3524 141 65 41 chr4 59320215 59320452 -143007895 + LTR8A LTR ERV1 497 727 0 2292 104 7 10 chr4 59320521 59320829 -143007518 - AluSx SINE Alu -5 307 1 2148 105 16 19 chr4 59320963 59321276 -143007071 - AluSx SINE Alu 0 312 1 838 167 49 15 chr4 59321713 59321798 -143006549 + LTR56 LTR ERV1 1 82 -363 1659 198 7 16 chr4 59321798 59322101 -143006246 + AluJo SINE Alu 1 300 -12 838 167 49 15 chr4 59322101 59322219 -143006128 + LTR56 LTR ERV1 82 211 -234 27 0 0 0 chr4 59322407 59322434 -143005913 + GC_rich Low_complexity Low_complexity 1 27 0 356 308 27 23 chr4 59323053 59323274 -143005073 + L1MC4 LINE L1 7595 7816 -226 418 239 207 50 chr4 59323274 59323516 -143004831 + MER34 LTR ERV1 1 265 -300 975 182 37 54 chr4 59323584 59323880 -143004467 + MER34B LTR ERV1 270 560 -5 364 332 52 31 chr4 59323880 59324109 -143004238 + L1MC4 LINE L1 7809 8042 0 450 262 33 8 chr4 59324845 59324967 -143003380 - MIR SINE MIR 0 262 138 1008 272 16 12 chr4 59325069 59325319 -143003028 + MIR SINE MIR 3 253 -9 2372 181 89 27 chr4 59325525 59326050 -143002297 + MER74A LTR ERVL 1 558 0 2450 61 0 0 chr4 59326055 59326350 -143001997 + AluY SINE Alu 1 295 -16 209 195 24 0 chr4 59326694 59326735 -143001612 + CT-rich Low_complexity Low_complexity 2 43 0 775 152 0 0 chr4 59327195 59327320 -143001027 + L1PA16 LINE L1 6033 6157 -9 2297 79 10 0 chr4 59327402 59327705 -143000642 - AluY SINE Alu -5 306 1 1870 149 0 4 chr4 59328278 59328559 -142999788 + AluSx SINE Alu 1 280 -32 1032 81 0 0 chr4 59328693 59328829 -142999518 - AluSc SINE Alu 0 309 174 424 304 29 48 chr4 59329070 59329277 -142999070 + MLT1J2 LTR MaLR 1 203 -247 1367 165 162 12 chr4 59329391 59329876 -142998471 - L1MB7 LINE L1 -89 6095 5489 402 151 21 54 chr4 59329909 59330002 -142998345 + MER21B LTR ERV1 667 756 -107 3206 237 48 90 chr4 59330059 59331022 -142997325 + L1M4c LINE L1 1054 1935 -4449 1923 134 17 10 chr4 59331022 59331321 -142997026 - AluSx SINE Alu -11 301 1 3206 237 48 90 chr4 59331321 59331819 -142996528 + L1M4c LINE L1 1935 2453 -3931 2216 91 14 0 chr4 59331832 59332119 -142996228 - AluSx SINE Alu -18 294 4 1024 111 0 25 chr4 59332122 59332284 -142996063 - MLT1A1 LTR MaLR -207 158 1 1348 234 30 10 chr4 59332296 59332599 -142995748 - MER21B LTR ERV1 -554 309 1 3089 217 151 7 chr4 59332599 59333502 -142994845 - L1M4c LINE L1 -5326 1058 26 2255 243 69 16 chr4 59333533 59334239 -142994108 - L1MC4a LINE L1 -359 7449 6698 1893 119 52 4 chr4 59334239 59334543 -142993804 - AluSq SINE Alu 0 317 1 2255 243 69 16 chr4 59334543 59334588 -142993759 - L1MC4a LINE L1 -1110 6698 6657 849 157 8 0 chr4 59334622 59334756 -142993591 - FLAM_C SINE Alu -8 135 1 2332 95 3 3 chr4 59334768 59335073 -142993274 - AluSp SINE Alu -8 305 1 636 257 39 5 chr4 59335076 59335282 -142993065 - L1M4 LINE L1 -2300 3846 3634 1977 132 42 0 chr4 59335950 59336239 -142992108 + AluSq SINE Alu 1 301 -12 2272 90 0 32 chr4 59336623 59336933 -142991414 - AluY SINE Alu -11 300 1 2974 42 0 0 chr4 59337533 59337892 -142990455 - L1PA5 LINE L1 0 6154 5796 1716 144 25 14 chr4 59337893 59338170 -142990177 - AluSx SINE Alu -7 305 26 229 194 83 0 chr4 59338171 59338243 -142990104 - L1MB7 LINE L1 -960 5331 5254 9921 177 58 17 chr4 59338353 59339226 -142989121 - L1MB7 LINE L1 -937 5209 4373 2130 117 3 0 chr4 59339226 59339548 -142988799 - AluSx SINE Alu 0 323 1 9921 177 58 17 chr4 59339548 59340237 -142988110 - L1MB7 LINE L1 -1773 4373 3713 2155 99 0 0 chr4 59340237 59340510 -142987837 + AluSx SINE Alu 1 273 -39 309 26 0 0 chr4 59340516 59340554 -142987793 + (CA)n Simple_repeat Simple_repeat 1 38 0 9921 177 58 17 chr4 59340554 59341284 -142987063 - L1MB7 LINE L1 -2437 3709 2815 3620 173 27 22 chr4 59341287 59341979 -142986368 - L1MB4 LINE L1 -142 6038 5332 1251 156 38 165 chr4 59341979 59342397 -142985950 - MLT1A1 LTR MaLR 0 365 1 3620 173 27 22 chr4 59342397 59342534 -142985813 - L1MB4 LINE L1 -848 5332 5197 2014 151 10 10 chr4 59342725 59343030 -142985317 - AluSx SINE Alu -2 310 6 1437 213 37 20 chr4 59343036 59343260 -142985087 - L1MB4 LINE L1 -940 5206 4970 3951 102 43 5 chr4 59343260 59343838 -142984509 + MER4A LTR ERV1 1 600 0 1437 213 37 20 chr4 59343838 59344016 -142984331 - L1MB4 LINE L1 -1176 4970 4797 2358 65 7 7 chr4 59344045 59344338 -142984009 - AluY SINE Alu -18 293 1 273 328 82 35 chr4 59344348 59344580 -142983767 - L1MEd LINE L1 -5298 821 579 1485 140 36 52 chr4 59344828 59345093 -142983254 - MER34C LTR ERV1 -14 571 310 2396 108 0 0 chr4 59345093 59345400 -142982947 + AluSx SINE Alu 1 307 -5 1485 140 36 52 chr4 59345400 59345442 -142982905 - MER34C LTR ERV1 -275 310 269 1198 160 118 0 chr4 59345443 59345655 -142982692 + AluJb SINE Alu 64 300 -12 1983 128 0 28 chr4 59345683 59345973 -142982374 - AluSx SINE Alu -30 282 1 1820 80 17 0 chr4 59346562 59346824 -142981523 - AluSc SINE Alu 0 303 38 1650 168 7 20 chr4 59347758 59348056 -142980291 - AluJb SINE Alu -18 294 1 2242 110 13 0 chr4 59348256 59348564 -142979783 + AluSx SINE Alu 1 312 0 194 61 0 30 chr4 59348945 59348978 -142979369 + (TTC)n Simple_repeat Simple_repeat 1 32 0 2185 81 7 55 chr4 59350001 59350309 -142978038 + AluSx SINE Alu 1 293 -19 189 0 0 0 chr4 59350720 59350741 -142977606 + (TA)n Simple_repeat Simple_repeat 2 22 0 2291 105 3 0 chr4 59350741 59351036 -142977311 - AluSx SINE Alu -16 296 1 21 0 0 0 chr4 59351580 59351601 -142976746 + AT_rich Low_complexity Low_complexity 1 21 0 1340 316 118 28 chr4 59351789 59352421 -142975926 - L1MB4 LINE L1 -1922 4224 3458 2039 103 9 91 chr4 59352421 59352762 -142975585 - AluSp SINE Alu 0 313 1 1340 316 118 28 chr4 59352762 59353182 -142975165 - L1MB4 LINE L1 -2688 3458 3077 1509 177 92 14 chr4 59353186 59353469 -142974878 - AluJo SINE Alu -7 305 1 222 37 0 0 chr4 59354202 59354229 -142974118 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 799 191 21 7 chr4 59354365 59354506 -142973841 - MER5A DNA MER1_type -15 174 32 374 350 87 63 chr4 59354785 59355071 -142973276 + L2 LINE L2 2980 3272 0 463 100 0 0 chr4 59356639 59356719 -142971628 + L1MA4 LINE L1 6221 6300 0 1873 158 0 31 chr4 59356801 59357123 -142971224 + AluJo SINE Alu 1 312 0 2149 89 6 51 chr4 59358094 59358408 -142969939 - AluSx SINE Alu -12 300 1 21 71 0 0 chr4 59358418 59358460 -142969887 + AT_rich Low_complexity Low_complexity 1 42 0 216 319 42 78 chr4 59358502 59358668 -142969679 + MIR SINE MIR 41 200 -62 2368 64 3 0 chr4 59358727 59359023 -142969324 + AluY SINE Alu 1 297 -14 349 292 0 0 chr4 59359023 59359112 -142969235 + L1MC4 LINE L1 6615 6703 -1339 2141 90 7 0 chr4 59359243 59359521 -142968826 - AluSx SINE Alu -21 291 12 1706 107 70 70 chr4 59359701 59359999 -142968348 - AluSx SINE Alu -14 298 1 489 228 10 124 chr4 59361746 59361832 -142966515 + L2 LINE L2 3135 3187 -126 2389 106 0 0 chr4 59361832 59362143 -142966204 - AluSx SINE Alu -1 311 1 489 228 10 124 chr4 59362143 59362258 -142966089 + L2 LINE L2 3187 3313 0 293 243 60 28 chr4 59362801 59362952 -142965395 + L1ME LINE L1 5654 5803 -318 2414 62 0 16 chr4 59363054 59363360 -142964987 + AluY SINE Alu 1 301 -10 574 285 40 65 chr4 59365087 59365287 -142963060 + MIR SINE MIR 2 196 -66 2274 99 3 3 chr4 59365346 59365648 -142962699 + AluSx SINE Alu 1 302 -10 511 223 0 62 chr4 59365909 59366039 -142962308 + Tigger3(Golem) DNA MER2_type 1 122 -2907 * 3976 119 59 11 chr4 59366022 59366245 -142962102 + Tigger3(Golem) DNA MER2_type 2282 2493 -536 2144 139 0 10 chr4 59366245 59366548 -142961799 + AluJo SINE Alu 1 300 -12 3976 119 59 11 chr4 59366548 59367037 -142961310 + Tigger3(Golem) DNA MER2_type 2493 3028 -1 251 313 62 18 chr4 59367073 59367185 -142961162 - MIR SINE MIR -109 153 37 1226 149 22 59 chr4 59367361 59367583 -142960764 + AluJo SINE Alu 86 299 -13 2406 128 24 0 chr4 59368105 59368481 -142959866 + L1PA15 LINE L1 5778 6162 -3 340 259 36 18 chr4 59368481 59368593 -142959754 - L2 LINE L2 -502 2812 2699 24 53 0 0 chr4 59369742 59369780 -142958567 + AT_rich Low_complexity Low_complexity 1 38 0 1862 102 29 0 chr4 59370803 59371077 -142957270 - L1PA13 LINE L1 -7 6156 5875 869 146 8 0 chr4 59371079 59371209 -142957138 - AluJo SINE Alu -177 135 5 255 31 0 0 chr4 59372671 59372703 -142955644 + (CA)n Simple_repeat Simple_repeat 2 33 0 2227 54 10 7 chr4 59373366 59373664 -142954683 - L1PA8 LINE L1 0 6172 5874 700 72 39 44 chr4 59373726 59373906 -142954441 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1568 172 37 27 chr4 59373906 59374329 -142954018 - AluJb SINE Alu 0 438 13 41084 28 22 1 chr4 59374329 59380342 -142948005 + L1PA2 LINE L1 14 6155 0 571 298 91 39 chr4 59380940 59381535 -142946812 - L1ME2 LINE L1 -279 5885 5260 2145 127 0 9 chr4 59381583 59381898 -142946449 + AluSx SINE Alu 1 312 0 261 276 24 49 chr4 59382124 59382247 -142946100 - LTR16C LTR ERVL -242 249 130 661 298 71 67 chr4 59382355 59382875 -142945472 - L1ME2 LINE L1 -1328 4818 4297 372 330 36 40 chr4 59382913 59383137 -142945210 + L1 LINE L1 3825 4047 -2099 870 314 64 52 chr4 59383242 59383323 -142945024 - L1ME2 LINE L1 -2717 3429 3350 720 89 0 18 chr4 59383323 59383435 -142944912 - L1MB8 LINE L1 -1 6177 6068 870 314 64 52 chr4 59383435 59383642 -142944705 - L1ME2 LINE L1 -2796 3350 3147 243 0 0 0 chr4 59383642 59383669 -142944678 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2029 112 32 0 chr4 59383671 59383948 -142944399 - AluSg SINE Alu -24 286 1 870 314 64 52 chr4 59383948 59384403 -142943944 - L1ME2 LINE L1 -2999 3147 2673 454 153 0 144 chr4 59384432 59384499 -142943848 - FLAM_A SINE Alu -183 128 82 2343 89 7 0 chr4 59384499 59384801 -142943546 + AluSc SINE Alu 1 304 -5 454 153 0 144 chr4 59384801 59384844 -142943503 - FLAM_A SINE Alu -229 82 34 264 267 124 22 chr4 59384926 59385208 -142943139 - L1ME2 LINE L1 -3573 2573 2266 5236 142 24 4 chr4 59385845 59387406 -142940941 + L1PB2 LINE L1 4495 6081 -70 205 200 0 0 chr4 59388131 59388171 -142940176 + A-rich Low_complexity Low_complexity 1 40 0 2374 93 0 3 chr4 59388203 59388514 -142939833 + AluY SINE Alu 1 310 -1 180 77 0 0 chr4 59390171 59390197 -142938150 + (TC)n Simple_repeat Simple_repeat 1 26 0 183 42 0 0 chr4 59391411 59391435 -142936912 + (CAG)n Simple_repeat Simple_repeat 2 25 0 291 221 0 47 chr4 59391659 59391745 -142936602 + (CCCCG)n Simple_repeat Simple_repeat 5 86 0 276 224 0 0 chr4 59392018 59392076 -142936271 + L2 LINE L2 3184 3241 -31 207 0 0 0 chr4 59392454 59392477 -142935870 + (TTA)n Simple_repeat Simple_repeat 2 24 0 996 81 0 107 chr4 59392479 59392676 -142935671 - L1PA10 LINE L1 -20 6148 5973 240 35 0 0 chr4 59393299 59393328 -142935019 + (A)n Simple_repeat Simple_repeat 1 29 0 841 264 69 31 chr4 59393573 59393808 -142934539 - L1ME LINE L1 -453 5717 5493 2100 142 3 3 chr4 59393808 59394110 -142934237 - AluSx SINE Alu -9 303 2 841 264 69 31 chr4 59394110 59394345 -142934002 - L1ME LINE L1 -677 5493 5216 1751 176 0 14 chr4 59394986 59395264 -142933083 + AluJo SINE Alu 9 282 -30 183 80 0 0 chr4 59395265 59395290 -142933057 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 * 351 113 0 0 chr4 59395289 59395342 -142933005 + (CATA)n Simple_repeat Simple_repeat 2 54 0 1296 266 48 28 chr4 59395476 59396128 -142932219 - L2 LINE L2 -42 3271 2605 1809 150 56 6 chr4 59396131 59396471 -142931876 + L1MB7 LINE L1 5808 6164 -20 2111 150 16 22 chr4 59396990 59397317 -142931030 + MLT1A1 LTR MaLR 1 327 -38 1803 191 16 0 chr4 59397317 59397621 -142930726 - AluJb SINE Alu -3 309 1 2111 150 16 22 chr4 59397621 59397660 -142930687 + MLT1A1 LTR MaLR 327 365 0 2504 47 3 0 chr4 59397736 59398035 -142930312 + AluY SINE Alu 1 300 -11 6728 123 12 7 chr4 59398647 59400406 -142927941 - L1MA3 LINE L1 0 6305 4536 286 24 24 0 chr4 59402187 59402228 -142926119 - MADE1 DNA Mariner -38 42 1 948 88 8 0 chr4 59402358 59402483 -142925864 + AluJo SINE Alu 11 136 -176 262 401 7 7 chr4 59403267 59403409 -142924938 + MIR SINE MIR 1 142 -120 304 255 125 42 chr4 59403587 59403779 -142924568 + MLT1K LTR MaLR 359 566 -22 4137 149 69 98 chr4 59404174 59404482 -142923865 - L1MD2 LINE L1 -2 6357 6041 1911 120 0 63 chr4 59404482 59404798 -142923549 - AluSx SINE Alu -16 296 1 4137 149 69 98 chr4 59404798 59405688 -142922659 - L1MD2 LINE L1 -318 6041 5188 1729 175 4 0 chr4 59405697 59405977 -142922370 - AluJo SINE Alu -27 285 5 1722 188 90 22 chr4 59406207 59406574 -142921773 + MSTD LTR MaLR 3 394 -2 1486 168 0 0 chr4 59407003 59407235 -142921112 - AluSg/x SINE Alu -7 303 72 1366 171 9 0 chr4 59407246 59407468 -142920879 - AluJo SINE Alu -4 308 85 2080 146 0 0 chr4 59408426 59408720 -142919627 - AluSx SINE Alu -18 294 1 341 253 44 11 chr4 59408923 59409014 -142919333 - MIR SINE MIR -110 152 59 1053 236 54 54 chr4 59409156 59409491 -142918856 + MER46C DNA MER2_type 4 338 0 2550 207 70 15 chr4 59409693 59410283 -142918064 - LTR27 LTR ERV1 0 636 15 27 0 0 0 chr4 59410315 59410342 -142918005 + AT_rich Low_complexity Low_complexity 1 27 0 1906 144 4 0 chr4 59410511 59410812 -142917535 + AluSx SINE Alu 6 307 0 297 270 20 10 chr4 59411280 59411380 -142916967 + MERVL LTR ERVL 5239 5339 -146 314 380 55 15 chr4 59411595 59411795 -142916552 + LTR16C LTR ERVL 168 375 -116 2290 212 138 47 chr4 59411870 59412421 -142915926 - MER77 LTR ERV1 -4 601 1 1996 118 6 48 chr4 59412564 59412877 -142915470 - AluSx SINE Alu -12 300 1 629 242 101 62 chr4 59412945 59413172 -142915175 - LTR16C LTR ERVL -255 236 1 1209 188 0 5 chr4 59414838 59415056 -142913291 + AluJo SINE Alu 86 302 -10 398 162 0 15 chr4 59415122 59415190 -142913157 + MLT1A2 LTR MaLR 308 374 0 198 322 0 0 chr4 59415251 59415310 -142913037 + L2 LINE L2 3214 3272 0 21 36 0 0 chr4 59415769 59415797 -142912550 + AT_rich Low_complexity Low_complexity 1 28 0 2932 96 0 3 chr4 59416207 59416572 -142911775 - THE1B LTR MaLR 0 364 1 1706 166 3 38 chr4 59417646 59417960 -142910387 - AluJo SINE Alu -9 303 1 244 258 135 34 chr4 59418360 59418449 -142909898 - MIR SINE MIR -130 132 35 1792 170 0 13 chr4 59418469 59418769 -142909578 + AluJo SINE Alu 1 296 -16 509 252 151 41 chr4 59419763 59419981 -142908366 + LTR16C LTR ERVL 250 491 0 411 240 42 0 chr4 59419987 59420083 -142908264 - MIR SINE MIR -155 107 8 269 291 118 55 chr4 59420270 59420397 -142907950 + MIR SINE MIR 16 150 -112 24 0 0 0 chr4 59420485 59420509 -142907838 + AT_rich Low_complexity Low_complexity 1 24 0 197 250 16 47 chr4 59420903 59420967 -142907380 + L3 LINE CR1 766 827 -750 181 341 0 0 chr4 59421299 59421343 -142907004 - MIR SINE MIR -116 92 49 279 307 145 64 chr4 59421384 59421796 -142906551 + L3 LINE CR1 863 1388 -189 550 320 64 78 chr4 59421866 59422277 -142906070 + L2 LINE L2 2715 3113 -159 1715 119 8 4 chr4 59422277 59422528 -142905819 - L1MB3 LINE L1 -2 6181 5930 550 320 64 78 chr4 59422528 59422652 -142905695 + L2 LINE L2 3113 3237 -35 220 287 26 52 chr4 59422694 59422809 -142905538 + L3 LINE CR1 1424 1535 -42 283 248 143 19 chr4 59422811 59422916 -142905431 - L2 LINE L2 -6 3307 3190 2185 123 7 3 chr4 59423566 59423875 -142904472 - AluSg SINE Alu 0 310 1 180 152 0 0 chr4 59424753 59424786 -142903561 + A-rich Low_complexity Low_complexity 1 33 0 2488 62 0 20 chr4 59424799 59424975 -142903372 - AluY SINE Alu -11 300 131 387 0 0 0 chr4 59424975 59425018 -142903329 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2488 62 0 20 chr4 59425018 59425147 -142903200 - AluY SINE Alu -180 131 1 923 203 16 99 chr4 59425218 59425460 -142902887 - MER21B-int LTR ERV1 -3968 223 2 2664 235 25 80 chr4 59425496 59426284 -142902063 - MER21B LTR ERV1 -21 842 98 424 152 0 116 chr4 59426415 59426514 -142901833 - MER21B LTR ERV1 -774 89 1 233 269 103 0 chr4 59426514 59426592 -142901755 - MIR SINE MIR -88 174 89 883 200 13 5 chr4 59426828 59427024 -142901323 - L1 LINE L1 -3129 4436 4244 19347 123 46 7 chr4 59427033 59429920 -142898427 - L1 LINE L1 -4546 3019 22 554 267 27 7 chr4 59429960 59430097 -142898250 + MLT2D LTR ERVL 206 348 -66 183 42 0 0 chr4 59430097 59430121 -142898226 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 554 267 27 7 chr4 59430121 59430133 -142898214 + MLT2D LTR ERVL 348 358 -56 15497 99 96 11 chr4 59430296 59432241 -142896106 + L1PBa LINE L1 154 2423 -4440 1912 125 68 0 chr4 59432241 59432521 -142895826 + AluSx SINE Alu 1 299 -13 15497 99 96 11 chr4 59432521 59433024 -142895323 + L1PBa LINE L1 2423 2882 -3981 1995 154 3 0 chr4 59483228 59483526 -142844821 + AluSx SINE Alu 1 299 -13 335 200 29 0 chr4 59483598 59483668 -142844679 - MIR SINE MIR 0 262 191 243 354 13 0 chr4 59484596 59484675 -142843672 + MIR SINE MIR 42 121 -87 1717 224 25 7 chr4 59485960 59486366 -142841981 - L1M4 LINE L1 -1246 4900 4488 26 0 0 0 chr4 59486516 59486542 -142841805 + AT_rich Low_complexity Low_complexity 1 26 0 7392 26 1 0 chr4 59488244 59489775 -142838572 - L1PA3 LINE L1 -145 6010 4479 280 239 84 0 chr4 59489876 59489947 -142838400 + MER46C DNA MER2_type 261 337 -1 748 182 0 15 chr4 59490343 59490475 -142837872 - FLAM_C SINE Alu -3 130 1 584 213 16 8 chr4 59490664 59490786 -142837561 - MIR SINE MIR -138 124 2 2279 92 3 9 chr4 59492035 59492350 -142835997 - AluSq SINE Alu 0 313 1 213 350 19 29 chr4 59492557 59492660 -142835687 + L2 LINE L2 2642 2743 -571 1233 256 157 21 chr4 59492661 59492975 -142835372 - MLT1G1 LTR MaLR 0 595 325 207 69 0 0 chr4 59492975 59493004 -142835343 + (CA)n Simple_repeat Simple_repeat 2 30 0 1233 256 157 21 chr4 59493004 59493213 -142835134 - MLT1G1 LTR MaLR -270 325 1 203 217 17 50 chr4 59493227 59493287 -142835060 + L2 LINE L2 3255 3312 -1 1584 170 83 0 chr4 59493357 59493645 -142834702 - AluJb SINE Alu 0 312 1 1823 174 52 38 chr4 59493650 59494075 -142834272 - L1MB7 LINE L1 0 6184 5754 1367 112 36 0 chr4 59494175 59494398 -142833949 - L1P LINE L1 -838 5308 5078 2238 82 0 27 chr4 59494408 59494700 -142833647 - AluY SINE Alu -23 288 5 812 261 64 20 chr4 59494765 59495014 -142833333 + MIR SINE MIR 2 261 -1 3843 87 0 0 chr4 59496357 59496933 -142831414 + L1P5 LINE L1 5200 5775 -376 382 236 37 62 chr4 59497291 59497452 -142830895 + L1ME4a LINE L1 5950 6106 -15 335 234 149 6 chr4 59497703 59497878 -142830469 - L1ME4a LINE L1 -157 5964 5765 427 370 31 35 chr4 59497888 59498142 -142830205 + L2 LINE L2 3008 3260 -12 469 290 52 34 chr4 59498142 59498411 -142829936 - L1ME4a LINE L1 -372 5749 5476 23 68 0 0 chr4 59498655 59498699 -142829648 + AT_rich Low_complexity Low_complexity 1 44 0 205 299 15 0 chr4 59498870 59498937 -142829410 + L2 LINE L2 2307 2374 -940 615 155 31 16 chr4 59499011 59499140 -142829207 + MER33 DNA MER1_type 52 182 -142 2205 212 113 31 chr4 59499188 59499858 -142828489 - MER50 LTR ERV1 0 734 10 3038 134 59 50 chr4 59500481 59500981 -142827366 + LTR26 LTR ERV1 1 508 -95 1718 158 3 21 chr4 59500981 59501266 -142827081 - AluJo SINE Alu -30 282 3 3038 134 59 50 chr4 59501266 59501362 -142826985 + LTR26 LTR ERV1 508 602 -1 2235 126 16 6 chr4 59501456 59501820 -142826527 - L1PB1 LINE L1 -8 6143 5776 205 127 13 51 chr4 59501831 59501910 -142826437 + (TA)n Simple_repeat Simple_repeat 2 77 0 371 256 23 0 chr4 59502022 59502108 -142826239 + MER5A DNA MER1_type 19 106 -83 223 277 40 59 chr4 59502564 59502665 -142825682 + MIR SINE MIR 42 140 -68 1933 155 0 3 chr4 59502774 59503065 -142825282 + AluJb SINE Alu 3 292 -20 531 232 58 29 chr4 59503285 59503492 -142824855 - L1ME3A LINE L1 -231 5939 5727 473 56 127 0 chr4 59503562 59503633 -142824714 + MADE1 DNA Mariner 1 80 0 496 231 88 14 chr4 59503665 59503812 -142824535 + MER5B DNA MER1_type 1 158 -20 309 280 108 0 chr4 59503867 59503960 -142824387 - L1ME3A LINE L1 -510 5660 5558 313 262 41 9 chr4 59503992 59504141 -142824206 - L1ME3A LINE L1 -733 5431 5278 424 297 92 20 chr4 59504181 59504376 -142823971 - L1ME3A LINE L1 -913 5233 5025 364 237 30 53 chr4 59504747 59504878 -142823469 - MIR SINE MIR -11 251 124 226 374 34 53 chr4 59504951 59505157 -142823190 + L2 LINE L2 2891 3092 -180 198 398 12 0 chr4 59505185 59505268 -142823079 + MIR SINE MIR 47 130 -78 1501 120 0 13 chr4 59505291 59505516 -142822831 - AluJo SINE Alu 0 312 91 450 204 51 0 chr4 59505542 59505640 -142822707 - MIR SINE MIR -111 151 49 342 45 0 0 chr4 59505649 59505693 -142822654 + (CCAA)n Simple_repeat Simple_repeat 4 47 0 667 164 82 25 chr4 59505887 59506046 -142822301 - MLT1B LTR MaLR -222 168 1 301 239 142 22 chr4 59506050 59506096 -142822251 - L1ME3A LINE L1 -1712 4434 4395 1385 215 52 7 chr4 59506096 59506384 -142821963 - AluJo SINE Alu -11 301 1 301 239 142 22 chr4 59506384 59506471 -142821876 - L1ME3A LINE L1 -1751 4395 4285 307 245 154 0 chr4 59507447 59507590 -142820757 + L1ME4a LINE L1 5954 6118 -3 185 254 109 0 chr4 59508134 59508189 -142820158 + MIR SINE MIR 104 164 -98 1258 193 112 11 chr4 59508472 59508741 -142819606 - AluJb SINE Alu -16 296 1 1797 163 3 0 chr4 59508898 59509212 -142819135 + AluJb SINE Alu 1 315 0 2204 112 3 3 chr4 59510022 59510326 -142818021 - AluSx SINE Alu -8 304 1 306 322 92 0 chr4 59511684 59511836 -142816511 - L1ME4a LINE L1 -7 6114 5949 274 229 19 38 chr4 59511864 59511969 -142816378 - L1ME4a LINE L1 -277 5844 5742 304 327 76 40 chr4 59512027 59512250 -142816097 - L1ME4a LINE L1 -399 5722 5492 275 328 54 29 chr4 59512787 59512991 -142815356 - L1ME3A LINE L1 -1974 4172 3964 2090 113 0 17 chr4 59513064 59513364 -142814983 - AluSc SINE Alu -8 301 7 447 277 72 30 chr4 59513686 59513852 -142814495 + MIR SINE MIR 48 220 -42 410 254 196 58 chr4 59515012 59515461 -142812886 + L1ME4a LINE L1 5547 6057 -64 352 267 71 88 chr4 59515495 59515735 -142812612 - L1ME4a LINE L1 -1981 4165 3930 1715 171 7 10 chr4 59515752 59516044 -142812303 - AluJo SINE Alu -21 291 1 1992 128 0 0 chr4 59516102 59516367 -142811980 + AluSx SINE Alu 1 265 -47 272 304 0 25 chr4 59516545 59516624 -142811723 - MIR3 SINE MIR -49 159 83 1137 136 6 0 chr4 59516719 59516888 -142811459 + AluJb SINE Alu 129 298 -14 1919 127 40 13 chr4 59517574 59517874 -142810473 + AluSx SINE Alu 1 308 -4 531 268 193 28 chr4 59518601 59518814 -142809533 + MIR SINE MIR 12 259 -3 2347 86 7 0 chr4 59519102 59519403 -142808944 + AluSp SINE Alu 6 308 -5 33 73 0 0 chr4 59519594 59519662 -142808685 + AT_rich Low_complexity Low_complexity 1 68 0 1996 133 7 7 chr4 59519753 59520053 -142808294 - AluSx SINE Alu -12 300 1 397 56 0 0 chr4 59520609 59520663 -142807684 + L1PB1 LINE L1 6095 6148 -3 304 247 49 0 chr4 59520692 59520773 -142807574 + MIR SINE MIR 119 203 -59 1914 134 131 36 chr4 59522088 59522476 -142805871 + MSTA LTR MaLR 4 428 0 190 369 54 18 chr4 59522854 59522965 -142805382 - L2 LINE L2 -26 3287 3173 2037 118 0 0 chr4 59523095 59523367 -142804980 - AluY SINE Alu -39 272 1 2169 131 131 8 chr4 59523603 59523984 -142804363 + MSTA LTR MaLR 1 428 0 264 272 184 10 chr4 59524038 59524141 -142804206 - MIR3 SINE MIR -5 203 83 1674 154 5 118 chr4 59524289 59524678 -142803669 - MER7A DNA MER2_type -3 343 1 471 263 124 21 chr4 59524690 59525017 -142803330 + MLT1L LTR MaLR 195 605 -10 460 279 70 0 chr4 59525031 59525160 -142803187 + L2 LINE L2 3163 3300 -13 183 100 0 0 chr4 59525160 59525190 -142803157 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 287 359 71 18 chr4 59525190 59525354 -142802993 + L2 LINE L2 2735 2907 -407 1222 208 67 45 chr4 59525361 59525717 -142802630 - MLT1A1 LTR MaLR -1 364 1 685 95 11 0 chr4 59529978 59530115 -142798232 - AluSg/x SINE Alu 0 321 184 23 54 0 0 chr4 59530332 59530369 -142797978 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr4 59530546 59530566 -142797781 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 273 29 0 0 chr4 59530565 59530599 -142797748 + (CA)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr4 59530639 59530661 -142797686 + AT_rich Low_complexity Low_complexity 1 22 0 1837 138 14 7 chr4 59530661 59530952 -142797395 - AluJo SINE Alu -19 293 1 507 264 82 50 chr4 59531396 59531616 -142796731 - MIR SINE MIR -24 238 12 330 304 130 0 chr4 59531698 59531813 -142796534 - MIR SINE MIR -130 132 3 23 78 0 0 chr4 59532032 59532083 -142796264 + AT_rich Low_complexity Low_complexity 1 51 0 2403 98 0 13 chr4 59532090 59532407 -142795940 + AluSq SINE Alu 1 313 0 408 61 0 158 chr4 59533226 59533308 -142795039 + Charlie5 DNA MER1_type 2517 2585 -27 1863 117 124 72 chr4 59533695 59534123 -142794224 + LTR47A LTR ERVL 1 450 -2 402 229 136 30 chr4 59534591 59534777 -142793570 + L1MA10 LINE L1 5953 6332 -2 1073 250 47 50 chr4 59535130 59535534 -142792813 - LTR16A1 LTR ERVL 0 457 55 2643 119 67 5 chr4 59535534 59535954 -142792393 + MSTB2 LTR MaLR 12 457 0 510 248 93 0 chr4 59535957 59536086 -142792261 + MIR SINE MIR 84 224 -38 480 208 129 0 chr4 59536389 59536490 -142791857 + FRAM SINE Alu 1 114 -62 31 0 0 0 chr4 59536502 59536533 -142791814 + AT_rich Low_complexity Low_complexity 1 31 0 2306 79 0 0 chr4 59538572 59538887 -142789460 - AluSg SINE Alu 0 315 1 1499 212 80 46 chr4 59538924 59539489 -142788858 + LTR24B LTR ERV1 2 635 0 36319 40 1 2 chr4 59539656 59544069 -142784278 - L1P LINE L1 -1737 4409 1 2332 201 33 39 chr4 59544556 59544866 -142783481 - L1MD3 LINE L1 0 7982 7671 1695 163 26 93 chr4 59544866 59545283 -142783064 + MLT1B LTR MaLR 2 390 0 2332 201 33 39 chr4 59545283 59545681 -142782666 - L1MD3 LINE L1 -311 7671 7104 1337 177 45 8 chr4 59545681 59545945 -142782402 - AluJo SINE Alu 0 303 31 1722 162 39 42 chr4 59545949 59546363 -142781984 - L1MA8 LINE L1 -24 6276 5809 339 136 15 15 chr4 59546437 59546503 -142781844 - L1MB8 LINE L1 -20 6158 6093 414 143 54 54 chr4 59546511 59546623 -142781724 - L1MB3 LINE L1 0 6183 6072 3267 74 4 58 chr4 59546734 59547231 -142781116 + L1PB1 LINE L1 5680 6149 -2 27 0 0 0 chr4 59547232 59547259 -142781088 + AT_rich Low_complexity Low_complexity 1 27 0 418 257 123 45 chr4 59547610 59547789 -142780558 - MIR3 SINE MIR -13 195 3 368 246 103 36 chr4 59548529 59548724 -142779623 - L1ME4a LINE L1 -6 6115 5908 381 273 0 9 chr4 59548826 59548936 -142779411 - L1ME4a LINE L1 -274 5847 5739 223 322 185 15 chr4 59548936 59549141 -142779206 + L3 LINE CR1 260 499 -1078 * 329 294 49 29 chr4 59549137 59549239 -142779108 + L2 LINE L2 3169 3272 0 699 274 60 0 chr4 59549294 59549495 -142778852 + MIR SINE MIR 41 253 -9 348 233 141 58 chr4 59549560 59549766 -142778581 + L3 LINE CR1 624 846 -731 180 314 194 24 chr4 59550068 59550192 -142778155 + L3 LINE CR1 1433 1577 0 324 262 58 122 chr4 59551552 59551724 -142776623 - L2 LINE L2 -19 3253 3093 511 339 41 37 chr4 59552629 59552847 -142775500 + MIR SINE MIR 26 244 -18 185 0 40 0 chr4 59552849 59552874 -142775473 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 243 0 0 0 chr4 59553188 59553215 -142775132 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1680 158 7 44 chr4 59553219 59553516 -142774831 - AluJo SINE Alu -26 286 1 423 329 120 54 chr4 59554480 59554887 -142773460 - L2 LINE L2 -2 3270 2837 783 119 0 42 chr4 59555232 59555375 -142772972 + AluSg/x SINE Alu 176 312 0 293 239 136 11 chr4 59556529 59556617 -142771730 - MIR SINE MIR -101 161 63 2121 133 7 0 chr4 59557450 59557751 -142770596 + AluSx SINE Alu 1 303 -9 235 268 42 28 chr4 59558473 59558544 -142769803 - MIR3 SINE MIR -4 204 133 367 163 12 25 chr4 59558720 59558800 -142769547 + MER116 DNA Mariner 1 79 -1 700 237 0 0 chr4 59560736 59560867 -142767480 - FLAM_A SINE Alu -2 131 1 476 250 78 9 chr4 59561011 59561127 -142767220 + L2 LINE L2 3186 3309 -4 24 53 0 0 chr4 59561758 59561796 -142766551 + AT_rich Low_complexity Low_complexity 1 38 0 1781 159 29 63 chr4 59561850 59561895 -142766452 - MER47A DNA MER2_type -1957 366 321 1987 154 0 0 chr4 59561895 59562207 -142766140 - AluJb SINE Alu 0 312 1 1781 159 29 63 chr4 59562207 59562539 -142765808 - MER47A DNA MER2_type -2002 321 2 684 137 0 0 chr4 59562781 59562883 -142765464 - U6 snRNA snRNA -5 102 1 419 306 94 17 chr4 59564987 59565255 -142763092 - L1MC/D LINE L1 -303 5818 5569 1524 137 4 0 chr4 59566014 59566240 -142762107 + AluJb SINE Alu 85 311 -1 257 196 174 0 chr4 59566293 59566385 -142761962 + MER87 LTR ERV1 396 503 -38 655 92 10 10 chr4 59566501 59566599 -142761748 + MER4A LTR ERV1 1 98 -566 1732 121 159 73 chr4 59566599 59566971 -142761376 + MER4A LTR ERV1 261 664 0 38 0 0 0 chr4 59568067 59568105 -142760242 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr4 59568459 59568482 -142759865 + AT_rich Low_complexity Low_complexity 1 23 0 658 239 130 39 chr4 59568764 59569258 -142759089 + L2 LINE L2 2697 3313 0 273 389 57 6 chr4 59569566 59569741 -142758606 + L2 LINE L2 2867 3050 -222 198 158 70 70 chr4 59570907 59570964 -142757383 - L3 LINE CR1 -2 1575 1519 634 177 118 15 chr4 59571782 59571997 -142756350 + MER46C DNA MER2_type 2 269 -69 254 260 110 119 chr4 59573388 59573607 -142754740 + L2 LINE L2 3038 3254 -18 22 0 0 0 chr4 59574723 59574745 -142753602 + AT_rich Low_complexity Low_complexity 1 22 0 790 200 118 6 chr4 59575016 59575186 -142753161 + MER5A DNA MER1_type 1 189 0 284 0 28 0 chr4 59576045 59576081 -142752266 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1895 154 4 0 chr4 59577315 59577619 -142750728 - AluSx SINE Alu 0 306 2 32 67 0 0 chr4 59578520 59578580 -142749767 + AT_rich Low_complexity Low_complexity 1 60 0 255 170 21 0 chr4 59580238 59580285 -142748062 + MSTB LTR MaLR 379 426 0 489 274 98 25 chr4 59580286 59580560 -142747787 + L1ME LINE L1 3784 4077 -2069 607 242 70 49 chr4 59580666 59581054 -142747293 + L1ME LINE L1 4263 4658 -1488 671 239 82 30 chr4 59581111 59581619 -142746728 + L1ME LINE L1 4968 5512 -652 4422 147 39 44 chr4 59582159 59582711 -142745636 + L1MB7 LINE L1 5267 5815 -369 2253 53 40 20 chr4 59582711 59583014 -142745333 + AluY SINE Alu 1 309 -2 4422 147 39 44 chr4 59583014 59583375 -142744972 + L1MB7 LINE L1 5815 6176 -8 216 370 85 27 chr4 59584009 59584339 -142744008 + L2 LINE L2 1184 1532 -1782 316 316 79 43 chr4 59584410 59584549 -142743798 + L2 LINE L2 2909 3052 -220 329 208 169 0 chr4 59585549 59585626 -142742721 - L2 LINE L2 -1 3312 3223 599 211 0 0 chr4 59586869 59586973 -142741374 + MER5B DNA MER1_type 75 178 0 538 223 216 7 chr4 59586985 59587133 -142741214 + MER5A DNA MER1_type 4 182 -7 193 357 92 60 chr4 59587173 59587358 -142740989 - L2 LINE L2 -1 3271 3081 480 245 14 50 chr4 59587609 59587748 -142740599 + L2 LINE L2 2250 2383 -931 255 359 52 47 chr4 59587763 59588125 -142740222 - LTR16C LTR ERVL -50 441 78 435 330 83 28 chr4 59588422 59588819 -142739528 - HERVL LTR ERVL -367 5287 4869 837 119 0 8 chr4 59588860 59588978 -142739369 - AluSg/x SINE Alu -17 295 179 702 270 67 41 chr4 59588979 59589249 -142739098 + L2 LINE L2 2986 3262 -51 709 213 7 0 chr4 59589253 59589403 -142738944 - MIR SINE MIR 0 262 112 4163 126 22 78 chr4 59589534 59590365 -142737982 + LTR1 LTR ERV1 1 784 -1 587 271 73 28 chr4 59590365 59590583 -142737764 + MIR SINE MIR 35 262 0 1492 144 25 61 chr4 59591521 59591799 -142736548 - AluSx SINE Alu 0 312 45 28 29 0 0 chr4 59592002 59592037 -142736310 + AT_rich Low_complexity Low_complexity 1 35 0 1011 212 23 39 chr4 59592191 59592593 -142735754 - L1M4 LINE L1 -707 5467 5076 636 332 70 40 chr4 59592747 59593202 -142735145 - L2 LINE L2 -1034 2280 1812 1999 124 3 0 chr4 59593258 59593541 -142734806 + AluSc SINE Alu 25 308 -1 229 231 0 0 chr4 59593609 59593661 -142734686 - LTR33A LTR ERVL 0 523 472 1780 170 6 35 chr4 59593668 59593985 -142734362 + AluJb SINE Alu 1 308 -4 271 275 62 12 chr4 59594406 59594486 -142733861 - MIR SINE MIR -156 106 23 1840 174 3 19 chr4 59595070 59595387 -142732960 + AluJb SINE Alu 1 312 0 2346 100 0 0 chr4 59595749 59596048 -142732299 + AluSx SINE Alu 1 299 -13 263 183 83 0 chr4 59596288 59596348 -142731999 - MIR SINE MIR -1 261 197 1771 154 47 27 chr4 59596438 59596737 -142731610 - AluJb SINE Alu -7 305 1 2206 132 124 75 chr4 59596811 59596853 -142731494 - MLT2B2 LTR ERVL 0 515 477 396 0 0 0 chr4 59596853 59596897 -142731450 + (CA)n Simple_repeat Simple_repeat 2 45 0 2206 132 124 75 chr4 59596897 59597345 -142731002 - MLT2B2 LTR ERVL -38 477 1 4115 121 6 9 chr4 59598827 59599464 -142728883 - MER41B LTR ERV1 0 635 1 2355 62 7 0 chr4 59599511 59599802 -142728545 + AluY SINE Alu 1 293 -18 382 255 114 7 chr4 59600749 59600898 -142727449 - LTR68 LTR ERV1 -575 165 1 4276 76 4 0 chr4 59600926 59601478 -142726869 + MER41A LTR ERV1 1 554 0 406 313 67 67 chr4 59601496 59601530 -142726817 + L3 LINE CR1 951 984 -593 2080 181 59 121 chr4 59601530 59602305 -142726042 + LTR8A LTR ERV1 1 727 0 406 313 67 67 chr4 59602305 59602538 -142725809 + L3 LINE CR1 983 1218 -359 187 243 0 0 chr4 59602602 59602639 -142725708 + L3 LINE CR1 1341 1377 -200 502 184 133 0 chr4 59602740 59602838 -142725509 - FLAM_C SINE Alu -32 111 1 284 291 128 8 chr4 59603425 59603542 -142724805 - L2 LINE L2 -4 3268 3138 1664 166 68 16 chr4 59604539 59604906 -142723441 - MLT1C LTR MaLR -43 424 39 1618 169 0 0 chr4 59604909 59605169 -142723178 - AluJo SINE Alu -52 260 1 838 217 43 83 chr4 59605696 59605954 -142722393 - HAL1 LINE L1 -2161 346 104 1838 120 29 7 chr4 59605954 59606228 -142722119 + AluJb SINE Alu 1 280 -32 838 217 43 83 chr4 59606228 59606319 -142722028 - HAL1 LINE L1 -2403 104 11 801 216 146 32 chr4 59606421 59606736 -142721611 - MLT1E2 LTR MaLR -8 618 268 221 0 35 0 chr4 59606788 59606817 -142721530 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 4710 109 33 2 chr4 59606822 59607868 -142720479 - L1MA3 LINE L1 -321 5984 4904 355 78 0 0 chr4 59607978 59608029 -142720318 - L1MA3 LINE L1 -1518 4628 4578 6348 117 28 13 chr4 59608029 59609071 -142719276 + MER11C LTR ERVK 1 1057 -14 3955 156 50 5 chr4 59609073 59609668 -142718679 - L1MA3 LINE L1 -1561 4585 3943 1762 173 7 17 chr4 59609668 59609968 -142718379 - AluJb SINE Alu -15 297 1 3955 156 50 5 chr4 59609968 59610173 -142718174 - L1MA3 LINE L1 -2203 3943 3749 536 110 0 0 chr4 59610173 59610255 -142718092 + MSTA LTR MaLR 347 428 0 400 240 82 0 chr4 59610735 59610881 -142717466 - MER51D LTR ERV1 0 657 500 396 198 0 0 chr4 59611014 59611095 -142717252 - MER51D LTR ERV1 -319 338 258 545 316 59 35 chr4 59611228 59611785 -142716562 - HERV17 LTR ERV1 0 8184 7542 1849 317 43 40 chr4 59613032 59615914 -142712433 - HERV17 LTR ERV1 -1146 3808 2970 506 286 27 27 chr4 59616299 59616559 -142711788 - HERV17 LTR ERV1 -3312 973 859 3477 60 5 7 chr4 59616589 59617038 -142711309 + LTR7 LTR ERV1 1 448 -2 2418 93 0 0 chr4 59617774 59618084 -142710263 + AluSx SINE Alu 1 310 -2 1559 168 115 40 chr4 59618219 59618713 -142709634 + LTR61 LTR ERV1 1 595 0 271 139 111 28 chr4 59618803 59618875 -142709472 - HERV17 LTR ERV1 -7738 78 1 408 212 76 15 chr4 59618875 59619007 -142709340 - MER51D LTR ERV1 0 657 518 276 149 0 0 chr4 59619152 59619199 -142709148 - MER51D LTR ERV1 -324 333 287 272 271 124 40 chr4 59621265 59621442 -142706905 + MIR SINE MIR 13 204 -58 792 163 0 0 chr4 59621591 59621714 -142706633 + FLAM_C SINE Alu 1 123 -10 21 0 0 0 chr4 59621720 59621741 -142706606 + AT_rich Low_complexity Low_complexity 1 21 0 2831 193 70 43 chr4 59621849 59622984 -142705363 - L1ME2 LINE L1 0 6164 5000 1667 117 0 155 chr4 59623676 59624088 -142704259 - MER7A DNA MER2_type 0 346 1 731 160 0 0 chr4 59624483 59624613 -142703734 + FLAM_A SINE Alu 10 139 0 35 41 0 0 chr4 59624723 59624772 -142703575 + AT_rich Low_complexity Low_complexity 1 49 0 1895 157 14 0 chr4 59625895 59626188 -142702159 + AluJb SINE Alu 3 299 -13 187 161 81 65 chr4 59626188 59626250 -142702097 - MER5A DNA MER1_type -61 128 66 561 322 74 28 chr4 59626917 59627240 -142701107 - L2 LINE L2 -941 2373 2036 183 286 54 0 chr4 59627274 59627330 -142701017 + MIR SINE MIR 83 141 -67 2300 91 0 10 chr4 59627762 59628059 -142700288 - AluSq SINE Alu -19 294 1 363 277 71 14 chr4 59628514 59628655 -142699692 + L2 LINE L2 3150 3298 -15 256 308 55 22 chr4 59628988 59629079 -142699268 - L2 LINE L2 -38 3234 3141 1815 166 0 4 chr4 59629297 59629575 -142698772 + AluJb SINE Alu 1 277 -35 1665 190 0 10 chr4 59629945 59630245 -142698102 + AluJb SINE Alu 1 297 -15 545 182 0 0 chr4 59631089 59631177 -142697170 + AluJb SINE Alu 109 196 -116 2531 59 0 7 chr4 59631788 59632095 -142696252 + AluYa5 SINE Alu 1 305 -6 1248 109 29 0 chr4 59632097 59632271 -142696076 + AluSg/x SINE Alu 128 306 -6 2427 89 3 3 chr4 59632628 59632941 -142695406 + AluSp SINE Alu 1 313 0 229 221 148 27 chr4 59634023 59634172 -142694175 + L1ME4a LINE L1 5944 6110 -11 33 0 0 0 chr4 59634173 59634206 -142694141 + AT_rich Low_complexity Low_complexity 1 33 0 1252 159 93 23 chr4 59634384 59634686 -142693661 - MER33 DNA MER1_type -1 323 1 1413 108 26 0 chr4 59635538 59635733 -142692614 - AluSg/x SINE Alu -21 291 92 343 368 133 14 chr4 59635833 59636474 -142691873 + L2 LINE L2 1968 2684 -630 2378 94 0 0 chr4 59636645 59636944 -142691403 + AluSx SINE Alu 1 299 -13 437 264 143 45 chr4 59637715 59638029 -142690318 + L1ME4a LINE L1 5773 6117 -4 27 0 0 0 chr4 59638029 59638056 -142690291 + AT_rich Low_complexity Low_complexity 1 27 0 230 204 0 0 chr4 59638293 59638337 -142690010 - AluJ/monomer SINE Alu -258 44 1 671 168 220 119 chr4 59638347 59638883 -142689464 - Charlie2 DNA MER1_type -32 2830 2241 744 276 36 71 chr4 59638924 59639261 -142689086 - Charlie2 DNA MER1_type -2537 325 1 3036 187 47 21 chr4 59639295 59640022 -142688325 + L1 LINE L1 3957 4702 -1444 2022 104 0 14 chr4 59640733 59641011 -142687336 + AluSp SINE Alu 40 313 0 1138 145 50 0 chr4 59641033 59641233 -142687114 - L1MB7 LINE L1 -194 5990 5781 1696 193 7 3 chr4 59641417 59641725 -142686622 - AluJo SINE Alu 0 309 1 208 170 75 19 chr4 59642072 59642125 -142686222 + L2 LINE L2 3187 3242 -71 182 291 99 92 chr4 59642298 59642439 -142685908 - MIR SINE MIR -2 260 119 189 0 0 0 chr4 59643034 59643055 -142685292 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 251 291 186 0 chr4 59643055 59643141 -142685206 - L2 LINE L2 -13 3300 3199 2212 125 3 0 chr4 59643422 59643718 -142684629 + AluSx SINE Alu 1 297 -15 422 313 20 62 chr4 59643725 59643920 -142684427 - L2 LINE L2 0 3313 3127 249 329 36 64 chr4 59643943 59644083 -142684264 - L2 LINE L2 -296 3017 2882 723 191 83 0 chr4 59644129 59644286 -142684061 + MIR SINE MIR 52 221 -41 2186 80 11 0 chr4 59644303 59644589 -142683758 + AluSp SINE Alu 1 289 -24 854 338 161 12 chr4 59644764 59645536 -142682811 + L2 LINE L2 1212 2098 -1216 322 250 136 0 chr4 59645596 59645684 -142682663 + L2 LINE L2 3213 3312 -1 326 205 26 0 chr4 59645760 59645838 -142682509 + MER116 DNA Mariner 1 80 0 949 151 25 25 chr4 59647499 59647658 -142680689 + AluJo SINE Alu 1 159 -153 1616 187 0 38 chr4 59648140 59648455 -142679892 - AluJb SINE Alu -9 303 1 393 305 117 0 chr4 59648744 59648872 -142679475 + MIR SINE MIR 55 197 -65 1220 163 53 0 chr4 59648879 59649143 -142679204 - L1MA7 LINE L1 0 6291 6014 183 273 299 0 chr4 59649255 59649332 -142679015 - L2 LINE L2 -9 3263 3164 348 303 71 75 chr4 59649535 59649802 -142678545 - L2 LINE L2 -40 3273 3008 1829 183 3 0 chr4 59649888 59650183 -142678164 - AluJo SINE Alu -16 296 1 291 107 36 0 chr4 59650579 59650635 -142677712 - LTR49 LTR ERV1 -72 523 466 767 225 11 37 chr4 59650993 59651184 -142677163 - MER5A DNA MER1_type -1 188 3 263 328 69 28 chr4 59652359 59652606 -142675741 + L2 LINE L2 2638 2894 -420 193 275 29 14 chr4 59652674 59652743 -142675604 + L2 LINE L2 2956 3025 -247 557 257 128 37 chr4 59652892 59653110 -142675237 + MIR SINE MIR 20 257 -5 251 71 24 0 chr4 59653714 59653756 -142674591 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1398 270 92 27 chr4 59653833 59654540 -142673807 + HAL1 LINE L1 23 775 -1732 912 218 47 44 chr4 59654546 59654890 -142673457 + HAL1 LINE L1 821 1165 -1342 521 154 22 0 chr4 59654894 59654985 -142673362 + U6 snRNA snRNA 7 99 -8 3892 145 47 0 chr4 59654994 59655669 -142672678 + L1MB3 LINE L1 5476 6182 -1 484 252 71 0 chr4 59655696 59655851 -142672496 + HAL1 LINE L1 2338 2503 -4 1944 158 3 3 chr4 59655923 59656227 -142672120 + AluJb SINE Alu 1 304 -8 2378 113 0 0 chr4 59656694 59657005 -142671342 - AluSx SINE Alu -1 311 1 257 266 13 13 chr4 59657596 59657675 -142670672 - MIR3 SINE MIR -5 203 125 556 299 36 0 chr4 59657718 59657885 -142670462 - MIR SINE MIR -69 193 21 189 381 0 52 chr4 59657886 59657983 -142670364 - MIR SINE MIR -84 124 33 281 281 129 28 chr4 59658132 59658310 -142670037 - MIR3 SINE MIR -8 200 5 2217 116 0 0 chr4 59659109 59659401 -142668946 + AluSx SINE Alu 1 292 -20 917 273 23 34 chr4 59659943 59660207 -142668140 - MIR SINE MIR -1 261 1 1997 219 148 7 chr4 59660281 59660961 -142667386 + LTR50 LTR ERVL 13 788 -7 475 230 22 65 chr4 59661429 59661568 -142666779 + MIR SINE MIR 30 162 -100 2152 119 10 13 chr4 59661669 59661980 -142666367 + AluSx SINE Alu 1 310 -2 181 278 0 0 chr4 59661988 59662024 -142666323 - L2 LINE L2 -86 3186 3151 339 350 100 52 chr4 59662031 59662360 -142665987 - L2 LINE L2 -1 3271 2927 1596 183 33 50 chr4 59662360 59662661 -142665686 + AluJo SINE Alu 1 296 -16 2463 182 35 50 chr4 59662878 59663444 -142664903 - MER74A LTR ERVL 0 558 1 214 359 0 0 chr4 59663579 59663657 -142664690 + L2 LINE L2 2999 3076 -196 623 253 66 95 chr4 59663844 59664148 -142664199 - MLT1K LTR MaLR -5 583 289 337 210 49 0 chr4 59664196 59664277 -142664070 - LTR50 LTR ERVL 0 795 711 279 0 0 0 chr4 59664798 59664829 -142663518 + (TA)n Simple_repeat Simple_repeat 2 32 0 365 338 0 14 chr4 59664888 59665030 -142663317 - LTR41 LTR ERVL -620 153 14 415 230 87 76 chr4 59665037 59665224 -142663123 - MLT1K LTR MaLR -350 238 35 1909 158 0 0 chr4 59715684 59715982 -142612365 + AluJb SINE Alu 1 298 -14 344 250 8 62 chr4 59716823 59716951 -142611396 - L1ME3A LINE L1 -4 6166 6046 2213 98 3 7 chr4 59716957 59717252 -142611095 + AluSx SINE Alu 1 294 -18 362 234 42 0 chr4 59717256 59717369 -142610978 + FLAM_A SINE Alu 39 144 0 1021 238 78 14 chr4 59717387 59717668 -142610679 - L1ME3A LINE L1 -166 6004 5706 345 180 0 0 chr4 59717841 59717902 -142610445 + MER106B DNA MER1_type 966 1026 -33 1927 132 103 3 chr4 59717911 59718252 -142610095 + MLT1B LTR MaLR 16 390 0 513 335 158 8 chr4 59718487 59718753 -142609594 + L2 LINE L2 2921 3226 -46 2165 103 89 23 chr4 59718980 59719330 -142609017 - THE1C LTR MaLR -2 373 1 217 308 81 96 chr4 59719629 59719889 -142608458 - L2 LINE L2 -50 3222 2967 316 77 39 0 chr4 59720008 59720060 -142608287 - L1MA5A LINE L1 -5 6292 6239 1972 147 0 29 chr4 59720320 59720627 -142607720 - AluJo SINE Alu -13 299 2 1841 173 6 16 chr4 59721347 59721659 -142606688 - AluSx SINE Alu -2 310 2 729 174 0 0 chr4 59721994 59722109 -142606238 + FLAM_A SINE Alu 25 139 -3 818 160 0 8 chr4 59722940 59723065 -142605282 - FLAM_C SINE Alu -18 125 2 756 312 126 29 chr4 59723509 59723602 -142604745 - L2 LINE L2 -3 3310 3227 2172 124 3 0 chr4 59723602 59723893 -142604454 + AluSx SINE Alu 1 292 -20 756 312 126 29 chr4 59723893 59724510 -142603837 - L2 LINE L2 -86 3227 2489 7951 159 15 6 chr4 59724611 59726378 -142601969 + L1MA4 LINE L1 3901 5688 -612 2488 175 53 8 chr4 59726382 59726874 -142601473 + L1MA4 LINE L1 5780 6293 -7 180 0 0 0 chr4 59726886 59726906 -142601441 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 6853 188 42 36 chr4 59727024 59727525 -142600822 - L1 LINE L1 -2440 3888 3391 2204 81 0 65 chr4 59727525 59727848 -142600499 - AluY SINE Alu -9 302 1 6853 188 42 36 chr4 59727848 59728049 -142600298 - L1 LINE L1 -2937 3391 3193 1914 174 3 0 chr4 59728049 59728360 -142599987 - AluJb SINE Alu 0 312 1 6853 188 42 36 chr4 59728360 59729503 -142598844 - L1 LINE L1 -3135 3193 2026 1506 190 69 3 chr4 59729503 59729793 -142598554 + AluJo SINE Alu 1 309 -3 6853 188 42 36 chr4 59729793 59730809 -142597538 - L1 LINE L1 -4302 2026 1017 999 161 0 7 chr4 59730811 59730966 -142597381 + AluJb SINE Alu 136 289 -23 3086 150 34 32 chr4 59730968 59731223 -142597124 - L1 LINE L1 -4294 1034 781 2325 119 0 0 chr4 59731223 59731535 -142596812 - AluSx SINE Alu 0 312 1 3086 150 34 32 chr4 59731535 59731866 -142596481 - L1 LINE L1 -4547 781 447 2725 187 21 2 chr4 59731973 59732450 -142595897 - L1 LINE L1 -4842 486 1 223 326 74 0 chr4 59732974 59733069 -142595278 + L2 LINE L2 2397 2498 -816 1391 165 0 16 chr4 59733384 59733626 -142594721 - AluJb SINE Alu -11 301 64 2237 60 4 7 chr4 59733635 59733949 -142594398 - AluY SINE Alu 0 313 1 2229 87 6 42 chr4 59734555 59734866 -142593481 + AluSx SINE Alu 1 300 -12 1758 168 7 11 chr4 59735439 59735725 -142592622 + AluJo SINE Alu 1 285 -27 22 35 0 0 chr4 59735825 59735854 -142592493 + AT_rich Low_complexity Low_complexity 1 29 0 1400 164 95 33 chr4 59736577 59736798 -142591549 + MER33 DNA MER1_type 1 248 -2337 1568 173 6 43 chr4 59736798 59737121 -142591226 - AluJo SINE Alu -1 311 1 1400 164 95 33 chr4 59737121 59737203 -142591144 + MER33 DNA MER1_type 248 323 -1 295 226 53 158 chr4 59737220 59737410 -142590937 + MIR SINE MIR 23 192 -70 1842 110 0 94 chr4 59738630 59738939 -142589408 - AluSx SINE Alu -6 306 27 1359 164 0 0 chr4 59739295 59739502 -142588845 + AluJb SINE Alu 15 221 -91 3841 220 87 151 chr4 59739507 59740642 -142587705 - L2 LINE L2 -108 3205 1999 328 164 0 9 chr4 59740642 59740859 -142587488 + AluJb SINE Alu 1 298 -4 3841 220 87 151 chr4 59740859 59741602 -142586745 - L2 LINE L2 -1314 1999 1206 774 22 0 0 chr4 59741602 59741691 -142586656 + 5S rRNA rRNA 2 90 -31 3841 220 87 151 chr4 59741691 59742021 -142586326 - L2 LINE L2 -2107 1206 857 2004 125 11 4 chr4 59742611 59742919 -142585428 - AluSx SINE Alu 0 310 1 664 126 18 0 chr4 59743017 59743128 -142585219 - L1MB4 LINE L1 -1 6179 6067 4199 150 36 17 chr4 59743132 59744151 -142584196 - L1MB4 LINE L1 -212 5971 4932 1971 193 15 13 chr4 59744386 59744779 -142583568 + MLT1C LTR MaLR 74 467 0 5204 205 69 72 chr4 59744779 59745310 -142583037 + MLT1C-int LTR MaLR 1 532 -839 1546 141 56 100 chr4 59745310 59745629 -142582718 + AluJb SINE Alu 1 305 -7 5204 205 69 72 chr4 59745629 59746470 -142581877 + MLT1C-int LTR MaLR 532 1369 -2 2190 200 24 13 chr4 59746472 59746923 -142581424 + MLT1C LTR MaLR 12 467 0 1720 156 11 11 chr4 59747246 59747528 -142580819 - AluJo SINE Alu -20 292 11 33 94 0 0 chr4 59747669 59747765 -142580582 + AT_rich Low_complexity Low_complexity 1 96 0 1821 139 3 61 chr4 59748533 59748843 -142579504 - AluSx SINE Alu -20 292 1 1987 128 0 10 chr4 59749372 59749661 -142578686 + AluSx SINE Alu 1 286 -26 189 254 103 48 chr4 59749833 59749959 -142578388 - L2 LINE L2 -1293 2021 1889 303 241 46 46 chr4 59750156 59750243 -142578104 + L2 LINE L2 3186 3272 0 22 56 0 0 chr4 59750716 59750752 -142577595 + AT_rich Low_complexity Low_complexity 1 36 0 222 301 151 27 chr4 59751034 59751107 -142577240 - MIR SINE MIR -168 94 13 1765 171 7 16 chr4 59751461 59751771 -142576576 + AluJb SINE Alu 1 307 -5 719 167 79 143 chr4 59752044 59752296 -142576051 + MER106A DNA MER1_type 1 236 0 1458 170 120 8 chr4 59752532 59752791 -142575556 + AluJo SINE Alu 1 288 -14 273 213 0 0 chr4 59752797 59752844 -142575503 + AluSc SINE Alu 127 173 -126 1427 132 5 0 chr4 59752944 59753148 -142575199 - AluSx SINE Alu -107 205 1 1513 194 3 20 chr4 59753940 59754055 -142574292 + AluJb SINE Alu 6 121 -191 245 29 29 0 chr4 59754055 59754089 -142574258 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1513 194 3 20 chr4 59754089 59754272 -142574075 + AluJb SINE Alu 121 299 -13 2217 127 0 0 chr4 59754463 59754763 -142573584 - AluSx SINE Alu -12 300 1 245 281 143 29 chr4 59755184 59755394 -142572953 - L2 LINE L2 -213 3059 2826 2505 132 3 19 chr4 59755438 59755808 -142572539 + MLT1A1 LTR MaLR 2 365 0 208 308 85 23 chr4 59755878 59755961 -142572386 + MIR3 SINE MIR 31 126 -82 1879 140 3 14 chr4 59755961 59756253 -142572094 - AluJb SINE Alu -23 289 1 208 308 85 23 chr4 59756253 59756299 -142572048 + MIR3 SINE MIR 126 168 -40 396 213 153 102 chr4 59756335 59756551 -142571796 - L2 LINE L2 -34 3279 3053 21 0 0 0 chr4 59756975 59756996 -142571351 + AT_rich Low_complexity Low_complexity 1 21 0 275 143 0 18 chr4 59757832 59757888 -142570459 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 959 188 6 0 chr4 59757979 59758139 -142570208 - AluJb SINE Alu -18 294 134 3625 192 64 23 chr4 59758144 59759094 -142569253 - L1MB2 LINE L1 -2 6169 5180 2280 114 0 10 chr4 59759858 59760166 -142568181 - AluSx SINE Alu -6 306 2 2551 175 6 17 chr4 59760442 59760922 -142567425 - L1MB4 LINE L1 0 6180 5706 896 187 13 0 chr4 59761171 59761368 -142566979 + FRAM SINE Alu 1 192 0 29 47 0 0 chr4 59761844 59761887 -142566460 + AT_rich Low_complexity Low_complexity 1 43 0 2108 106 0 0 chr4 59762466 59762739 -142565608 - AluSx SINE Alu -39 273 1 1516 277 123 24 chr4 59762779 59763672 -142564675 - L2 LINE L2 -2 3311 2336 1556 218 156 46 chr4 59763674 59764129 -142564218 + MLT1C LTR MaLR 1 467 0 602 314 55 8 chr4 59764129 59764365 -142563982 - L2 LINE L2 -983 2331 2085 2369 46 42 0 chr4 59765165 59765450 -142562897 - AluY SINE Alu -14 297 1 234 62 0 0 chr4 59766318 59766350 -142561997 + (CCCTA)n Simple_repeat Simple_repeat 1 32 0 2002 134 0 7 chr4 59766512 59766802 -142561545 + AluJb SINE Alu 1 288 -24 218 328 0 0 chr4 59767076 59767143 -142561204 + CT-rich Low_complexity Low_complexity 2 68 0 325 319 17 26 chr4 59768233 59768349 -142559998 + MIR SINE MIR 23 137 -71 955 234 29 5 chr4 59768352 59768561 -142559786 - MER58C DNA MER1_type -1 214 1 811 209 7 20 chr4 59769095 59769263 -142559084 - AluJb SINE Alu 0 302 137 2219 112 0 3 chr4 59769829 59770132 -142558215 - AluSx SINE Alu -10 302 1 376 293 128 57 chr4 59770254 59770763 -142557584 + L2 LINE L2 2029 2573 -741 1052 130 5 49 chr4 59770948 59770962 -142557385 - AluSg/x SINE Alu 0 312 299 1125 119 72 31 chr4 59770962 59771155 -142557192 - L1PA15 LINE L1 0 6165 5965 1052 130 5 49 chr4 59771155 59771324 -142557023 - AluSg/x SINE Alu -13 299 137 182 281 98 12 chr4 59771431 59771513 -142556834 + MIR SINE MIR 69 157 -105 1997 111 10 27 chr4 59771547 59771844 -142556503 - AluSx SINE Alu -20 292 1 2272 92 7 3 chr4 59772329 59772632 -142555715 - AluSp SINE Alu -9 304 1 229 346 10 10 chr4 59772818 59772922 -142555425 - L2 LINE L2 -1 3271 3168 23 0 0 0 chr4 59772964 59772987 -142555360 + AT_rich Low_complexity Low_complexity 1 23 0 2014 136 11 0 chr4 59773228 59773514 -142554833 - AluJb SINE Alu -23 289 1 280 170 0 19 chr4 59773785 59773838 -142554509 + MLT1K LTR MaLR 510 561 -27 1303 217 25 32 chr4 59773860 59774174 -142554173 - AluJo SINE Alu 0 312 1 401 252 90 0 chr4 59774642 59774753 -142553594 - L2 LINE L2 0 3313 3193 244 235 0 0 chr4 59774755 59774806 -142553541 + AluJ/FLAM SINE Alu 36 86 -216 394 193 12 12 chr4 59774908 59774991 -142553356 - L1ME LINE L1 -530 5640 5558 979 212 31 0 chr4 59775536 59775729 -142552618 + MER58A DNA MER1_type 5 203 -21 812 206 50 0 chr4 59775726 59775886 -142552461 - Charlie1 DNA MER1_type -2593 168 1 * 216 0 0 0 chr4 59775941 59775965 -142552382 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 885 133 14 14 chr4 59775967 59776110 -142552237 - FRAM SINE Alu -30 146 4 2608 177 113 16 chr4 59776110 59776676 -142551671 - L1MB5 LINE L1 -96 6078 5458 3708 198 40 17 chr4 59777070 59777788 -142550559 - MER21B LTR ERV1 -113 750 16 3358 118 64 15 chr4 59777788 59778588 -142549759 - Tigger3(Golem) DNA MER2_type -1 3028 274 590 210 0 0 chr4 59778586 59778686 -142549661 - Tigger3(Golem) DNA MER2_type -2927 102 3 * 189 0 0 0 chr4 59778702 59778723 -142549624 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1834 134 7 14 chr4 59778739 59779016 -142549331 - AluJo SINE Alu -37 275 1 1500 181 55 15 chr4 59779122 59779421 -142548926 + AluJb SINE Alu 1 310 0 2283 116 0 0 chr4 59780424 59780727 -142547620 + AluSx SINE Alu 1 303 -9 216 0 0 0 chr4 59781109 59781133 -142547214 + (TG)n Simple_repeat Simple_repeat 2 25 0 30 27 0 0 chr4 59781340 59781377 -142546970 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr4 59781423 59781459 -142546888 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 59781563 59781584 -142546763 + AT_rich Low_complexity Low_complexity 1 21 0 308 307 40 33 chr4 59781922 59782072 -142546275 + L2 LINE L2 545 695 -2619 333 311 0 19 chr4 59782081 59782184 -142546163 + MER5B DNA MER1_type 1 101 -77 2729 117 67 7 chr4 59782222 59782657 -142545690 - L1MA5A LINE L1 -10 6287 5827 376 188 0 14 chr4 59782742 59782811 -142545536 + MER112 DNA MER1_type 193 260 0 870 276 286 51 chr4 59782823 59782975 -142545372 + L2 LINE L2 835 950 -2364 2289 109 0 6 chr4 59782975 59783286 -142545061 - AluSc SINE Alu 0 309 1 870 276 286 51 chr4 59783286 59783728 -142544619 + L2 LINE L2 950 1287 -2027 1870 138 20 23 chr4 59783728 59784033 -142544314 + AluJo SINE Alu 2 305 -7 870 276 286 51 chr4 59784033 59784373 -142543974 + L2 LINE L2 1287 1546 -1768 2221 125 0 0 chr4 59784373 59784684 -142543663 + AluSq SINE Alu 1 311 -2 2208 123 3 7 chr4 59784685 59784994 -142543353 + AluSx SINE Alu 1 308 -4 870 276 286 51 chr4 59784994 59785111 -142543236 + L2 LINE L2 1546 1634 -1680 486 162 81 0 chr4 59785111 59785222 -142543125 - L1MB2 LINE L1 -1 6170 6051 870 276 286 51 chr4 59785222 59785338 -142543009 + L2 LINE L2 1634 1721 -1593 1840 128 62 59 chr4 59785338 59785712 -142542635 - THE1C LTR MaLR 0 375 1 870 276 286 51 chr4 59785712 59785735 -142542612 + L2 LINE L2 1721 2313 -1001 2135 156 56 8 chr4 59785778 59786151 -142542196 - MSTA LTR MaLR 0 428 38 3045 237 37 34 chr4 59786156 59786595 -142541752 - HERVL40 LTR ERVL -79 5451 5008 2184 126 3 0 chr4 59786595 59786896 -142541451 + AluSq SINE Alu 3 304 -9 3045 237 37 34 chr4 59786896 59787270 -142541077 - HERVL40 LTR ERVL -522 5008 4636 1237 209 48 60 chr4 59787276 59787592 -142540755 - HERVL40 LTR ERVL -3053 2477 2166 1843 166 3 3 chr4 59787625 59787914 -142540433 + AluSx SINE Alu 1 289 -23 1652 153 41 8 chr4 59787915 59788183 -142540164 - AluJo SINE Alu -35 277 1 567 155 129 9 chr4 59788183 59788299 -142540048 - HERVL40 LTR ERVL -3351 2179 2050 490 200 92 15 chr4 59788298 59788428 -142539919 - HERVL40 LTR ERVL -3913 1617 1478 * 1040 239 158 73 chr4 59788528 59788860 -142539487 - HERVL40 LTR ERVL -4072 1458 1069 1662 173 21 14 chr4 59788860 59789028 -142539319 - AluJb SINE Alu -21 291 119 225 0 0 0 chr4 59789028 59789053 -142539294 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1662 173 21 14 chr4 59789053 59789173 -142539174 - AluJb SINE Alu -193 119 1 1040 239 158 73 chr4 59789173 59789333 -142539014 - HERVL40 LTR ERVL -4461 1069 924 1711 228 102 32 chr4 59789607 59790068 -142538279 - LTR40a LTR ERVL -1 518 26 754 107 49 0 chr4 59790103 59790225 -142538122 - L1MB4 LINE L1 0 6180 6053 357 277 69 48 chr4 59790234 59790422 -142537925 - L1 LINE L1 -2367 4481 4290 837 166 6 11 chr4 59790696 59790877 -142537470 + CT-rich Low_complexity Low_complexity 1 180 0 403 247 0 0 chr4 59790877 59790954 -142537393 + polypyrimidine Low_complexity Low_complexity 1 77 0 1816 142 35 10 chr4 59790954 59791243 -142537104 - AluJo SINE Alu -16 296 1 385 271 115 24 chr4 59791259 59791554 -142536793 - L1 LINE L1 -2929 3919 3598 404 269 46 15 chr4 59791556 59791610 -142536737 + MER94 DNA DNA 1 52 -82 2002 143 57 27 chr4 59791610 59791946 -142536401 - MER7A DNA MER2_type 0 346 3 404 269 46 15 chr4 59791946 59792021 -142536326 + MER94 DNA DNA 52 134 0 326 354 56 6 chr4 59792081 59792242 -142536105 - L1 LINE L1 -3316 3532 3364 938 122 54 0 chr4 59792266 59792413 -142535934 - FRAM SINE Alu 0 40 1 1654 160 167 3 chr4 59792561 59792873 -142535474 - MER47A DNA MER2_type -3 363 1 234 272 12 25 chr4 59793025 59793106 -142535241 - L1 LINE L1 -3667 3181 3102 2912 170 50 32 chr4 59793165 59793317 -142535030 - L1MB8 LINE L1 0 6178 6030 1860 148 7 7 chr4 59793317 59793620 -142534727 + AluJb SINE Alu 1 303 -9 2912 170 50 32 chr4 59793620 59794657 -142533690 - L1MB8 LINE L1 -148 6030 4918 1138 153 18 31 chr4 59794906 59795128 -142533219 - MER20 DNA MER1_type 0 219 1 261 0 0 0 chr4 59795225 59795254 -142533093 + (T)n Simple_repeat Simple_repeat 1 29 0 2484 73 0 0 chr4 59795728 59796031 -142532316 - AluSp SINE Alu -10 303 1 1663 70 18 31 chr4 59796312 59796540 -142531807 + AluSq SINE Alu 89 313 0 415 256 168 88 chr4 59797272 59798006 -142530341 - L1 LINE L1 -5443 1406 180 378 0 0 0 chr4 59798615 59798657 -142529690 + (TG)n Simple_repeat Simple_repeat 2 43 0 183 261 0 0 chr4 59799503 59799549 -142528798 + L2 LINE L2 3268 3313 0 304 247 0 26 chr4 59799606 59799683 -142528664 - L2 LINE L2 -5 3267 3193 319 283 54 42 chr4 59799830 59800000 -142528347 - MIR SINE MIR -63 145 9 709 274 84 0 chr4 59800127 59800342 -142528005 + MIR SINE MIR 13 245 -17 803 139 108 16 chr4 59800401 59800530 -142527817 - FLAM_C SINE Alu -1 142 2 850 220 61 9 chr4 59800547 59800761 -142527586 + MER112 DNA MER1_type 32 256 -4 579 281 34 53 chr4 59800899 59801162 -142527185 - MIR SINE MIR -3 259 2 21 0 0 0 chr4 59801789 59801810 -142526537 + AT_rich Low_complexity Low_complexity 1 21 0 221 171 0 0 chr4 59802628 59802669 -142525678 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1688 141 19 19 chr4 59802671 59802940 -142525407 - AluJo SINE Alu -35 277 9 298 180 0 0 chr4 59804906 59804956 -142523391 + MER33 DNA MER1_type 55 104 -220 616 120 194 0 chr4 59804956 59805064 -142523283 + AluJ SINE Alu 1 129 -173 709 187 32 0 chr4 59805086 59805209 -142523138 + AluJ SINE Alu 105 231 -81 261 0 0 0 chr4 59805216 59805245 -142523102 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 800 153 0 8 chr4 59805259 59805377 -142522970 + AluJb SINE Alu 2 118 -194 930 157 38 64 chr4 59805398 59805633 -142522714 + MER33 DNA MER1_type 96 324 0 299 143 89 0 chr4 59805634 59805690 -142522657 - MIR3 SINE MIR -49 159 99 1159 123 28 6 chr4 59806093 59806272 -142522075 - AluSg/x SINE Alu -9 303 121 1885 54 0 21 chr4 59806272 59806512 -142521835 - AluY SINE Alu 0 311 77 1895 111 61 14 chr4 59807296 59807576 -142520771 - AluSx SINE Alu -19 293 1 2114 103 0 7 chr4 59808558 59808839 -142519508 + AluSg SINE Alu 1 279 -31 2227 160 60 5 chr4 59809108 59809476 -142518871 + MLT1B LTR MaLR 1 388 -2 221 269 19 0 chr4 59809667 59809719 -142518628 - MIR3 SINE MIR -27 181 129 186 43 0 0 chr4 59809854 59809877 -142518470 + (TTG)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr4 59809947 59809968 -142518379 + AT_rich Low_complexity Low_complexity 1 21 0 2402 93 7 0 chr4 59810079 59810381 -142517966 + AluSx SINE Alu 1 304 -8 867 292 144 21 chr4 59810419 59810931 -142517416 - L1ME3A LINE L1 -235 5935 5357 285 267 185 15 chr4 59810956 59811091 -142517256 - MIR3 SINE MIR -21 187 30 483 295 170 44 chr4 59811347 59811730 -142516617 + L2 LINE L2 2842 3272 0 632 198 0 0 chr4 59811919 59812020 -142516327 + AluJ/FLAM SINE Alu 2 102 -210 1968 129 28 3 chr4 59812385 59812672 -142515675 - AluSq SINE Alu -19 294 1 1749 171 10 7 chr4 59812719 59813023 -142515324 + AluJo SINE Alu 7 311 -1 2564 60 0 0 chr4 59813284 59813583 -142514764 + AluY SINE Alu 1 299 -12 1642 179 0 0 chr4 59813815 59814089 -142514258 + AluJb SINE Alu 1 274 -38 1465 192 0 42 chr4 59815568 59815880 -142512467 - AluJo SINE Alu -13 299 1 493 263 154 11 chr4 59815881 59816056 -142512291 + MIR SINE MIR 63 262 0 2102 188 63 25 chr4 59816786 59817053 -142511294 + L1MD3 LINE L1 7409 7664 -331 3997 182 34 47 chr4 59817053 59818019 -142510328 - LTR13 LTR ERVK 0 954 1 2102 188 63 25 chr4 59818019 59818303 -142510044 + L1MD3 LINE L1 7664 7981 -14 2980 219 75 88 chr4 59818353 59819202 -142509145 + HAL1 LINE L1 1112 1936 -571 2117 130 0 0 chr4 59819202 59819495 -142508852 - AluSx SINE Alu -19 293 1 2980 219 75 88 chr4 59819495 59820048 -142508299 + HAL1 LINE L1 1936 2495 -12 1738 99 114 23 chr4 59820153 59820416 -142507931 - AluSx SINE Alu -25 287 1 3152 170 97 26 chr4 59820759 59821484 -142506863 - LTR39 LTR ERV1 -7 776 1 199 336 117 7 chr4 59822249 59822386 -142505961 + L2 LINE L2 3120 3271 -42 22 0 0 0 chr4 59822588 59822610 -142505737 + AT_rich Low_complexity Low_complexity 1 22 0 490 257 41 23 chr4 59822612 59822783 -142505564 - MLT1J LTR MaLR -3 508 335 352 239 15 85 chr4 59822940 59823070 -142505277 - MLT1J LTR MaLR -280 231 111 514 201 45 126 chr4 59823219 59823488 -142504859 - MER112 DNA MER1_type -13 247 1 236 197 45 30 chr4 59823940 59824006 -142504341 + MIR SINE MIR 84 150 -112 264 291 48 29 chr4 59824131 59824234 -142504113 - MIR3 SINE MIR -3 205 101 2093 106 3 0 chr4 59825296 59825606 -142502741 - AluSx SINE Alu 0 311 1 2440 68 0 10 chr4 59825609 59825919 -142502428 - AluY SINE Alu -4 307 1 1653 124 8 91 chr4 59825952 59826314 -142502033 + L1MB3 LINE L1 5851 6182 -1 2248 100 0 3 chr4 59826358 59826657 -142501690 - AluSx SINE Alu -14 298 1 255 264 0 0 chr4 59826804 59826857 -142501490 - MIR3 SINE MIR -24 184 132 634 203 25 8 chr4 59827216 59827334 -142501013 + FLAM_A SINE Alu 1 120 -13 26 0 0 0 chr4 59827334 59827360 -142500987 + AT_rich Low_complexity Low_complexity 1 26 0 395 309 0 0 chr4 59827670 59827780 -142500567 - MIR SINE MIR -1 261 152 191 129 0 0 chr4 59827776 59827807 -142500540 - MIR SINE MIR -220 42 12 * 2027 131 7 13 chr4 59827928 59828233 -142500114 - AluJb SINE Alu -9 303 1 432 361 52 15 chr4 59828259 59828589 -142499758 + L2 LINE L2 2185 2526 -788 236 223 78 97 chr4 59828898 59829001 -142499346 + L2 LINE L2 3172 3272 0 21 0 0 0 chr4 59829012 59829033 -142499314 + AT_rich Low_complexity Low_complexity 1 21 0 2318 196 111 26 chr4 59829638 59830022 -142498325 - MER97a DNA MER1_type? 0 894 544 1711 122 0 0 chr4 59830022 59830252 -142498095 + AluSg SINE Alu 61 290 -20 2318 196 111 26 chr4 59830252 59830627 -142497720 - MER97a DNA MER1_type? -350 544 71 1083 163 6 0 chr4 59830628 59830794 -142497553 + FAM SINE Alu 3 169 -16 233 256 0 61 chr4 59830909 59830991 -142497356 + A-rich Low_complexity Low_complexity 2 78 0 344 256 12 0 chr4 59831012 59831094 -142497253 - MER97b DNA MER1_type? -970 83 1 371 209 0 0 chr4 59831732 59831799 -142496548 - MIR SINE MIR 0 262 196 1274 211 27 32 chr4 59831811 59832186 -142496161 - MLT1A2 LTR MaLR 0 467 3 593 286 25 6 chr4 59832187 59832348 -142495999 - MIR SINE MIR -98 164 1 2249 103 0 0 chr4 59832536 59832826 -142495521 - AluSx SINE Alu -22 290 1 1453 200 39 66 chr4 59832834 59833348 -142494999 - L1MC5 LINE L1 -36 7925 7426 1639 191 10 112 chr4 59833706 59834005 -142494342 - L1MC4 LINE L1 -751 7291 6963 1638 173 7 30 chr4 59834005 59834305 -142494042 - AluJb SINE Alu -19 293 1 1639 191 10 112 chr4 59834305 59834347 -142494000 - L1MC4 LINE L1 -1079 6963 6918 2387 94 16 0 chr4 59834347 59834655 -142493692 - AluSq SINE Alu 0 313 1 1639 191 10 112 chr4 59834655 59834913 -142493434 - L1MC4 LINE L1 -1124 6918 6752 243 246 0 33 chr4 59835380 59835441 -142492906 - MIR3 SINE MIR -54 154 96 1340 167 61 95 chr4 59835535 59835913 -142492434 + MLT1A1 LTR MaLR 1 365 0 360 211 0 0 chr4 59837243 59837319 -142491028 + FLAM_A SINE Alu 35 110 -23 39 0 0 0 chr4 59837637 59837676 -142490671 + AT_rich Low_complexity Low_complexity 1 39 0 1661 167 36 0 chr4 59837679 59837954 -142490393 - AluJo SINE Alu -27 285 1 409 328 112 24 chr4 59838235 59838485 -142489862 - L2 LINE L2 -9 3263 2992 1780 171 36 0 chr4 59838580 59838860 -142489487 + AluJb SINE Alu 1 290 -22 22 0 0 0 chr4 59838979 59839001 -142489346 + AT_rich Low_complexity Low_complexity 1 22 0 196 169 0 46 chr4 59839413 59839478 -142488869 + CT-rich Low_complexity Low_complexity 3 64 0 186 221 23 81 chr4 59839515 59839601 -142488746 + MIR SINE MIR 98 178 -84 229 290 108 21 chr4 59839812 59839905 -142488442 + MIR SINE MIR 96 196 -66 1676 163 42 14 chr4 59840639 59840928 -142487419 - AluJb SINE Alu -15 297 1 1571 164 23 15 chr4 59840933 59841195 -142487152 - AluJb SINE Alu -16 296 33 24 32 0 0 chr4 59841748 59841779 -142486568 + AT_rich Low_complexity Low_complexity 1 31 0 326 333 68 14 chr4 59842110 59842257 -142486090 - L2 LINE L2 -2 3270 3116 1892 149 10 3 chr4 59842508 59842809 -142485538 + AluJb SINE Alu 1 303 -9 2131 113 3 13 chr4 59843590 59843891 -142484456 + AluSg1 SINE Alu 1 298 -11 278 247 0 0 chr4 59844316 59844401 -142483946 - L1MA10 LINE L1 -11 6323 6239 3081 214 57 16 chr4 59844438 59845688 -142482659 - L1ME1 LINE L1 -92 6074 4772 324 130 0 0 chr4 59845689 59845735 -142482612 - Tigger3(Golem) DNA MER2_type -2907 122 77 619 183 0 9 chr4 59845770 59845885 -142482462 + AluJb SINE Alu 194 307 -5 549 133 0 0 chr4 59845885 59845968 -142482379 - Tigger3(Golem) DNA MER2_type -2943 86 4 307 183 0 98 chr4 59845975 59846057 -142482290 + L1MEc LINE L1 1864 1937 -4459 548 241 36 12 chr4 59846061 59846227 -142482120 - L1MEc LINE L1 -6182 214 45 995 142 0 0 chr4 59846300 59846465 -142481882 + FRAM SINE Alu 6 170 0 2104 158 0 3 chr4 59846770 59847080 -142481267 + AluSx SINE Alu 1 309 -3 293 155 17 0 chr4 59847894 59847952 -142480395 + CT-rich Low_complexity Low_complexity 2 60 0 22 35 0 0 chr4 59848392 59848421 -142479926 + AT_rich Low_complexity Low_complexity 1 29 0 432 326 72 9 chr4 59849285 59849506 -142478841 + L2 LINE L2 936 1170 -2144 956 193 0 18 chr4 59850036 59850202 -142478145 + AluJb SINE Alu 134 296 -16 1739 182 16 3 chr4 59850367 59850675 -142477672 - AluJb SINE Alu 0 312 1 363 255 177 32 chr4 59850701 59851046 -142477301 - L1ME4a LINE L1 -11 6110 5716 425 359 42 39 chr4 59851407 59851817 -142476530 - L1ME4a LINE L1 -1179 4967 4557 537 359 59 39 chr4 59852452 59853141 -142475206 - L2 LINE L2 0 3272 2577 2126 133 7 0 chr4 59853326 59853634 -142474713 - AluSx SINE Alu -2 310 1 924 144 0 0 chr4 59853636 59853768 -142474579 - AluSq/x SINE Alu -180 132 1 353 248 60 15 chr4 59853995 59854128 -142474219 + MER103 DNA DNA 4 142 -24 457 267 48 31 chr4 59854202 59854286 -142474061 - L1ME4a LINE L1 -2932 3214 3133 1858 154 0 38 chr4 59854286 59854604 -142473743 - AluJb SINE Alu -6 306 1 457 267 48 31 chr4 59854604 59854871 -142473476 - L1ME4a LINE L1 -3013 3133 2857 269 68 23 0 chr4 59855079 59855123 -142473224 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 1143 29 0 0 chr4 59855123 59855260 -142473087 - L1PA3 LINE L1 -24 6131 5995 22 35 0 0 chr4 59855272 59855301 -142473046 + AT_rich Low_complexity Low_complexity 1 29 0 1692 140 20 34 chr4 59855377 59855479 -142472868 - L1MB8 LINE L1 0 6178 6076 3498 117 24 6 chr4 59855479 59856025 -142472322 - LTR38 LTR ERV1 0 556 1 1692 140 20 34 chr4 59856025 59856514 -142471833 - L1MB8 LINE L1 -102 6076 5463 1557 149 49 72 chr4 59856514 59856902 -142471445 + MLT1B LTR MaLR 1 379 -11 428 151 86 84 chr4 59856909 59856945 -142471402 - L1MB8 LINE L1 -711 5467 5433 1735 156 3 52 chr4 59856945 59857271 -142471076 - AluJo SINE Alu 0 312 3 428 151 86 84 chr4 59857271 59857407 -142470940 - L1MB8 LINE L1 -745 5433 5284 2349 82 0 23 chr4 59857490 59857796 -142470551 - AluSq SINE Alu -14 299 1 406 229 33 33 chr4 59858908 59859030 -142469317 + MIR SINE MIR 117 238 -24 1061 268 121 52 chr4 59859073 59859666 -142468681 - L1ME3A LINE L1 -15 6155 5522 1992 124 0 10 chr4 59859689 59859979 -142468368 - AluSx SINE Alu -24 288 2 1745 247 55 18 chr4 59860123 59860687 -142467660 - L1MC4 LINE L1 -131 7911 7322 2398 65 0 26 chr4 59860687 59860997 -142467350 - AluY SINE Alu -9 302 1 1745 247 55 18 chr4 59860997 59861031 -142467316 - L1MC4 LINE L1 -720 7322 7291 1144 180 0 29 chr4 59861032 59861238 -142467109 + AluJo SINE Alu 1 200 -112 698 127 0 9 chr4 59861287 59861397 -142466950 + AluJo SINE Alu 191 299 -13 345 227 36 9 chr4 59861407 59861517 -142466830 - L1MC4 LINE L1 -1064 6978 6866 609 323 128 49 chr4 59861551 59861677 -142466670 + L2 LINE L2 2236 2351 -963 2138 118 3 3 chr4 59861677 59861973 -142466374 + AluSx SINE Alu 1 296 -16 609 323 128 49 chr4 59861973 59862505 -142465842 + L2 LINE L2 2351 2946 -368 1718 160 7 7 chr4 59862863 59863156 -142465191 + AluJb SINE Alu 1 293 -19 180 0 0 0 chr4 59863709 59863729 -142464618 + (CAT)n Simple_repeat Simple_repeat 2 21 0 753 311 58 10 chr4 59863746 59864039 -142464308 - MLT1I LTR MaLR -22 387 81 621 194 78 0 chr4 59864179 59864308 -142464039 - MIR SINE MIR -10 252 114 2069 118 10 3 chr4 59864652 59864940 -142463407 - AluSx SINE Alu -22 290 1 258 270 261 0 chr4 59865073 59865196 -142463151 + MIR SINE MIR 41 191 -63 830 263 35 0 chr4 59865358 59865556 -142462791 + MIR SINE MIR 13 217 -45 512 195 32 49 chr4 59865575 59865698 -142462649 + L2 LINE L2 3188 3308 -5 850 116 0 0 chr4 59865884 59865996 -142462351 + FLAM_C SINE Alu 21 132 -11 193 398 48 19 chr4 59866017 59866120 -142462227 + L2 LINE L2 3149 3254 -18 22 56 0 0 chr4 59867049 59867085 -142461262 + AT_rich Low_complexity Low_complexity 1 36 0 2293 73 10 10 chr4 59868047 59868349 -142459998 + AluY SINE Alu 1 302 -9 31 44 0 0 chr4 59868424 59868469 -142459878 + AT_rich Low_complexity Low_complexity 1 45 0 2407 63 7 0 chr4 59868469 59868756 -142459591 - AluSp SINE Alu -24 289 1 2046 141 7 3 chr4 59868861 59869159 -142459188 - AluSx SINE Alu -13 299 1 235 271 84 19 chr4 59869290 59869397 -142458950 + MIR SINE MIR 51 164 -98 2007 145 0 26 chr4 59870129 59870433 -142457914 - AluSx SINE Alu -16 296 1 2095 92 0 0 chr4 59870441 59870703 -142457644 - AluSx SINE Alu -16 296 35 1735 152 6 58 chr4 59870851 59871180 -142457167 - AluJo SINE Alu 0 312 1 240 302 28 67 chr4 59871341 59871520 -142456827 - L2 LINE L2 -17 3296 3125 1112 217 18 5 chr4 59871524 59871741 -142456606 - MER58A DNA MER1_type -1 223 4 1973 134 10 7 chr4 59872425 59872717 -142455630 - AluSx SINE Alu -19 293 1 2519 61 0 0 chr4 59872809 59873106 -142455241 - AluY SINE Alu -14 297 1 1515 183 96 12 chr4 59873141 59873474 -142454873 + L1ME1 LINE L1 5800 6160 -6 212 250 227 0 chr4 59873915 59874003 -142454344 - L2 LINE L2 -9 3263 3156 590 253 100 12 chr4 59874026 59874196 -142454151 - MIR SINE MIR -12 250 66 1293 204 45 35 chr4 59874539 59874828 -142453519 - AluJo SINE Alu -20 292 1 585 290 54 67 chr4 59874828 59875071 -142453276 + L1ME4a LINE L1 5540 5778 -343 2104 116 24 7 chr4 59875071 59875365 -142452982 + AluSx SINE Alu 1 299 -13 585 290 54 67 chr4 59875365 59875511 -142452836 + L1ME4a LINE L1 5778 5924 -197 326 339 16 8 chr4 59875582 59875703 -142452644 - MER5A DNA MER1_type -67 122 1 271 286 29 19 chr4 59875899 59876004 -142452343 + L1MC4a LINE L1 5800 5905 -1903 1559 144 13 5 chr4 59876023 59876398 -142451949 - L1MA7 LINE L1 -11 6280 5797 1087 139 22 0 chr4 59876391 59876571 -142451776 + L1MB1 LINE L1 5709 5892 -276 * 2405 251 58 6 chr4 59876556 59877226 -142451121 - L1M4 LINE L1 -1813 4333 3629 231 226 97 0 chr4 59877248 59877310 -142451037 - L1MA7 LINE L1 -478 5813 5746 185 169 17 0 chr4 59877336 59877395 -142450952 + (TA)n Simple_repeat Simple_repeat 1 60 0 1769 144 28 3 chr4 59878179 59878463 -142449884 - AluJo SINE Alu -21 291 1 255 31 0 0 chr4 59878713 59878745 -142449602 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1653 163 21 21 chr4 59879231 59879519 -142448828 + AluJo SINE Alu 1 288 -24 182 380 0 0 chr4 59879626 59879705 -142448642 - L2 LINE L2 -667 2647 2569 862 76 15 38 chr4 59879818 59879950 -142448397 + L1PA6 LINE L1 6026 6154 0 239 327 52 20 chr4 59880190 59880343 -142448004 - L2 LINE L2 -1408 1906 1749 2397 67 0 10 chr4 59881141 59881302 -142447045 - AluSp SINE Alu -19 294 136 2268 96 3 0 chr4 59881302 59881593 -142446754 - AluSc SINE Alu -17 292 1 2397 67 0 10 chr4 59881593 59881728 -142446619 - AluSp SINE Alu -177 136 1 426 203 68 42 chr4 59882295 59882413 -142445934 - MER82 DNA MER2_type 0 653 533 1653 185 52 12 chr4 59882413 59882759 -142445588 - L1M3 LINE L1 -547 5636 5277 5503 117 54 22 chr4 59882826 59883428 -142444919 - L1MA4 LINE L1 0 6300 5656 2207 139 137 13 chr4 59883428 59883809 -142444538 - MSTA LTR MaLR 0 428 1 5503 117 54 22 chr4 59883809 59884149 -142444198 - L1MA4 LINE L1 -644 5656 5328 492 139 129 40 chr4 59884182 59884283 -142444064 - L1MA3 LINE L1 0 6305 6196 11282 168 49 5 chr4 59884283 59885100 -142443247 - L1MA4 LINE L1 -813 5333 4553 2278 95 0 23 chr4 59885100 59885405 -142442942 - AluY SINE Alu -11 300 3 11282 168 49 5 chr4 59885405 59886760 -142441587 - L1MA4 LINE L1 -1593 4553 3066 667 202 17 0 chr4 59886757 59886876 -142441471 + L1ME LINE L1 5484 5604 -560 * 239 281 24 12 chr4 59887176 59887258 -142441089 - L1ME LINE L1 -5986 84 2 411 255 0 0 chr4 59888250 59888344 -142440003 + MIR SINE MIR 47 140 -122 2164 120 3 0 chr4 59888410 59888701 -142439646 + AluSx SINE Alu 3 294 -18 2146 93 4 0 chr4 59888882 59889215 -142439132 + AluSg SINE Alu 1 334 0 436 256 105 38 chr4 59889742 59890076 -142438271 - L2 LINE L2 -104 3209 2838 2116 186 46 31 chr4 59890195 59890653 -142437694 - MLT1C LTR MaLR -2 465 1 338 275 44 0 chr4 59890678 59890769 -142437578 - MIR SINE MIR -108 154 60 1619 176 40 17 chr4 59890771 59891067 -142437280 + AluJb SINE Alu 1 303 -9 320 130 11 57 chr4 59891104 59891193 -142437154 + FRAM/FAM SINE Alu 19 62 -113 357 24 0 0 chr4 59891536 59891578 -142436769 + (TG)n Simple_repeat Simple_repeat 1 42 0 2106 89 7 0 chr4 59891623 59891893 -142436454 + AluSp SINE Alu 1 272 -41 225 0 0 0 chr4 59891993 59892018 -142436329 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 2216 125 0 0 chr4 59892796 59893099 -142435248 - AluSx SINE Alu -9 303 1 1652 145 10 59 chr4 59893603 59893678 -142434669 - L1MB5 LINE L1 0 6174 6097 2505 62 0 3 chr4 59893678 59893985 -142434362 - AluY SINE Alu -5 306 1 1652 145 10 59 chr4 59893985 59894213 -142434134 - L1MB5 LINE L1 -77 6097 5886 1745 162 3 23 chr4 59895508 59895811 -142432536 + AluJo SINE Alu 1 297 -15 26 0 0 0 chr4 59896394 59896420 -142431927 + AT_rich Low_complexity Low_complexity 1 26 0 250 296 56 37 chr4 59896467 59896575 -142431772 - L2 LINE L2 -1 3271 3162 498 46 0 0 chr4 59897351 59897416 -142430931 + (TC)n Simple_repeat Simple_repeat 1 65 0 234 0 0 0 chr4 59897415 59897441 -142430906 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 216 0 0 0 chr4 59897440 59897464 -142430883 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 1711 172 3 38 chr4 59897618 59897932 -142430415 + AluSq SINE Alu 1 303 -10 3453 31 0 0 chr4 59898129 59898512 -142429835 - L1PA4 LINE L1 -3 6152 5770 5864 23 3 1 chr4 59898518 59899195 -142429152 - L1PA3 LINE L1 0 6155 5508 292 227 15 0 chr4 59899226 59899292 -142429055 + MER103 DNA DNA 4 70 -96 2134 113 3 7 chr4 59899305 59899607 -142428740 - THE1-int LTR MaLR -344 1236 936 887 158 0 0 chr4 59899626 59899765 -142428582 - THE1C LTR MaLR -236 139 1 1887 153 111 145 chr4 59899860 59900383 -142427964 - MLT1D LTR MaLR 0 505 1 2205 109 0 10 chr4 59900838 59901140 -142427207 + AluSx SINE Alu 1 299 -13 242 246 66 0 chr4 59901651 59901712 -142426635 + L2 LINE L2 3148 3212 -60 2581 108 17 14 chr4 59901714 59902074 -142426273 - THE1B LTR MaLR -3 361 1 2129 180 25 19 chr4 59903200 59903561 -142424786 + MLT1A1 LTR MaLR 3 365 0 2289 82 3 0 chr4 59906413 59906705 -142421642 - AluY SINE Alu -18 293 1 24 0 0 0 chr4 59907527 59907551 -142420796 + AT_rich Low_complexity Low_complexity 1 24 0 2370 104 0 0 chr4 59908132 59908440 -142419907 + AluSg SINE Alu 3 310 0 591 168 0 0 chr4 59909413 59909508 -142418839 - L1MC1 LINE L1 0 6333 6239 598 155 43 9 chr4 59909548 59909664 -142418683 - L1MB7 LINE L1 -10 6174 6055 21 57 0 0 chr4 59909664 59909699 -142418648 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 59909836 59909859 -142418488 + AT_rich Low_complexity Low_complexity 1 23 0 351 308 133 8 chr4 59910576 59910810 -142417537 + L1MC4a LINE L1 5615 5877 -1931 2139 111 0 3 chr4 59910985 59911274 -142417073 - AluSx SINE Alu -23 289 2 259 219 86 9 chr4 59911491 59911596 -142416751 - L1ME4a LINE L1 -2 6119 6007 578 214 228 0 chr4 59912366 59912511 -142415836 - MER45A DNA AcHobo 0 178 1 493 337 21 63 chr4 59912714 59912904 -142415443 - MER91A DNA MER1_type -14 182 1 1607 205 111 14 chr4 59913009 59913370 -142414977 - MSTD LTR MaLR 0 396 1 1947 155 13 7 chr4 59913608 59913911 -142414436 + AluJo SINE Alu 3 307 -5 882 168 0 0 chr4 59914374 59914505 -142413842 - FLAM_C SINE Alu -1 132 2 457 246 274 42 chr4 59914892 59915177 -142413170 - MLT1J LTR MaLR -18 493 143 313 135 19 0 chr4 59915292 59915344 -142413003 - MER57A-int LTR ERV1 -213 7324 7272 654 134 59 8 chr4 59915344 59915463 -142412884 - LTR54B LTR ERV1 -371 127 3 5749 150 38 17 chr4 59915463 59916443 -142411904 - MER57A-int LTR ERV1 -391 7146 6147 306 0 0 0 chr4 59916474 59916508 -142411839 + (TA)n Simple_repeat Simple_repeat 2 35 0 1364 146 64 30 chr4 59916570 59916837 -142411510 - AluJo SINE Alu -30 282 7 2243 134 3 15 chr4 59916837 59917179 -142411168 - MER57A-int LTR ERV1 -1373 6164 5827 3093 158 32 61 chr4 59917268 59917976 -142410371 - MER57A-int LTR ERV1 -1957 4374 3687 736 184 63 51 chr4 59918063 59918470 -142409877 - MER57A-int LTR ERV1 -2653 3678 1790 288 148 0 0 chr4 59918490 59918544 -142409803 - MER57A-int LTR ERV1 -3878 2880 2827 405 213 11 11 chr4 59918665 59918759 -142409588 - MER57A-int LTR ERV1 -2884 3447 3354 437 250 30 0 chr4 59918814 59918914 -142409433 - MER57A-int LTR ERV1 -2990 3341 3239 565 98 12 0 chr4 59918961 59919043 -142409304 - L1PA13 LINE L1 -9 6154 6072 555 169 26 101 chr4 59919089 59919330 -142409017 - MER57A-int LTR ERV1 -3732 1391 1198 610 208 139 7 chr4 59919331 59919475 -142408872 - MER34C LTR ERV1 -268 317 155 1206 136 4 76 chr4 59919690 59919926 -142408421 - MER57A-int LTR ERV1 -6763 774 556 522 61 0 0 chr4 59919938 59920004 -142408343 + MER41B LTR ERV1 1 66 -569 2619 177 11 118 chr4 59920010 59920716 -142407631 - LTR27 LTR ERV1 -3 633 3 3883 135 2 0 chr4 59920716 59921288 -142407059 + MER41B LTR ERV1 63 635 0 2963 204 7 4 chr4 59921293 59921852 -142406495 - MER57A-int LTR ERV1 -3804 2527 1 2195 107 17 154 chr4 59921852 59921894 -142406453 - MER57A LTR ERV1 0 403 357 2164 109 3 0 chr4 59921894 59922201 -142406146 + AluSp SINE Alu 1 308 0 2195 107 17 154 chr4 59922201 59922624 -142405723 - MER57A LTR ERV1 -46 357 1 1239 186 32 5 chr4 59922771 59922991 -142405356 - MLT1A1 LTR MaLR 0 365 140 23 0 0 0 chr4 59923019 59923042 -142405305 + AT_rich Low_complexity Low_complexity 1 23 0 1993 137 10 0 chr4 59923042 59923335 -142405012 + AluSg SINE Alu 1 296 -14 267 77 0 0 chr4 59923342 59923381 -142404966 + AluSc SINE Alu 233 271 -28 270 0 0 0 chr4 59923382 59923412 -142404935 + (TC)n Simple_repeat Simple_repeat 2 31 0 1984 135 40 3 chr4 59923460 59923757 -142404590 + AluSg SINE Alu 1 308 -2 1654 184 0 38 chr4 59923757 59924050 -142404297 - AluJo SINE Alu -30 282 1 787 204 0 7 chr4 59924058 59924205 -142404142 - MLT1A1 LTR MaLR -219 146 1 356 260 73 41 chr4 59924283 59924406 -142403941 + L2 LINE L2 3139 3265 -7 261 271 29 43 chr4 59924755 59924895 -142403452 + MIR3 SINE MIR 49 186 -22 2959 9 0 0 chr4 59925428 59925746 -142402601 + AluYb8 SINE Alu 1 318 0 2000 176 75 34 chr4 59925881 59925948 -142402399 - MLT1C LTR MaLR -6 461 398 3887 109 6 74 chr4 59925948 59926599 -142401748 - MER4B LTR ERV1 0 610 4 2000 176 75 34 chr4 59926599 59926968 -142401379 - MLT1C LTR MaLR -69 398 7 841 149 8 30 chr4 59927006 59927140 -142401207 - FLAM_C SINE Alu -2 131 1 780 158 0 27 chr4 59927153 59927337 -142401010 + CT-rich Low_complexity Low_complexity 1 179 0 861 228 6 0 chr4 59927339 59927501 -142400846 - FRAM SINE Alu -13 163 1 1759 158 0 27 chr4 59928066 59928385 -142399962 - AluSx SINE Alu 0 311 1 212 243 122 47 chr4 59928430 59928537 -142399810 + MIR3 SINE MIR 85 199 -9 336 315 106 56 chr4 59929569 59930018 -142398329 - L2 LINE L2 -202 3070 2599 5821 131 5 45 chr4 59930177 59931274 -142397073 + L1PB3 LINE L1 5084 6150 -4 21 0 0 0 chr4 59931293 59931314 -142397033 + AT_rich Low_complexity Low_complexity 1 21 0 25 21 0 43 chr4 59931374 59931393 -142396954 + AT_rich Low_complexity Low_complexity 1 19 -26 1846 109 12 100 chr4 59931393 59931723 -142396624 + AluSx SINE Alu 1 301 -11 25 21 0 43 chr4 59931723 59931750 -142396597 + AT_rich Low_complexity Low_complexity 19 45 0 753 196 47 47 chr4 59931895 59932170 -142396177 - L1MC5 LINE L1 -441 7520 7246 557 301 109 24 chr4 59932197 59932501 -142395846 - L1M4 LINE L1 -1101 5045 4768 1747 168 11 0 chr4 59932501 59932786 -142395561 - AluJo SINE Alu -24 288 1 557 301 109 24 chr4 59932786 59933239 -142395108 - L1M4 LINE L1 -1378 4768 4195 1148 98 0 24 chr4 59933249 59933413 -142394934 + L1P5 LINE L1 5410 5569 -585 2069 110 3 20 chr4 59933817 59934118 -142394229 - AluSx SINE Alu -11 301 6 1413 99 34 34 chr4 59935321 59935554 -142392793 + MSTB1 LTR MaLR 1 233 -199 363 98 0 0 chr4 59935562 59935623 -142392724 + (TC)n Simple_repeat Simple_repeat 1 61 0 1202 179 13 30 chr4 59935623 59935857 -142392490 + MSTB1 LTR MaLR 203 432 0 741 260 72 0 chr4 59936284 59936465 -142391882 - MER58A DNA MER1_type 0 224 31 901 99 7 70 chr4 59937209 59937351 -142390996 + FLAM_C SINE Alu 1 133 0 249 329 118 10 chr4 59937569 59937773 -142390574 + MIR SINE MIR 28 251 -11 1460 169 47 109 chr4 59937898 59938282 -142390065 + MLT1A1 LTR MaLR 6 365 0 181 289 0 0 chr4 59939280 59939318 -142389029 + MIR3 SINE MIR 118 155 -53 291 336 37 9 chr4 59939977 59940084 -142388263 + L2 LINE L2 3158 3267 -5 642 241 78 14 chr4 59940164 59940558 -142387789 + L1ME3A LINE L1 5587 6107 -63 2202 182 85 86 chr4 59940869 59941429 -142386918 - L1ME1 LINE L1 -187 5979 5422 2013 97 0 15 chr4 59941429 59941737 -142386610 - AluSx SINE Alu 0 324 21 2202 182 85 86 chr4 59941737 59941995 -142386352 - L1ME1 LINE L1 -744 5422 5165 739 172 45 22 chr4 59941995 59942129 -142386218 - FLAM_A SINE Alu 0 142 6 2180 212 57 36 chr4 59942129 59942794 -142385553 - L1ME1 LINE L1 -1207 4939 4261 2394 155 70 19 chr4 59942803 59943275 -142385072 - L1MB7 LINE L1 0 6184 5689 22 0 0 0 chr4 59943306 59943328 -142385019 + AT_rich Low_complexity Low_complexity 1 22 0 1723 220 69 14 chr4 59944733 59945169 -142383178 + MLT1C LTR MaLR 1 460 -7 616 269 82 39 chr4 59945636 59945893 -142382454 + L1ME LINE L1 5494 5761 -360 286 271 135 16 chr4 59946252 59946445 -142381902 - L1MC/D LINE L1 -335 5786 5609 471 63 0 0 chr4 59946446 59946509 -142381838 + (CA)n Simple_repeat Simple_repeat 2 64 0 249 250 43 14 chr4 59946541 59946681 -142381666 + (TA)n Simple_repeat Simple_repeat 1 144 0 226 200 0 0 chr4 59946682 59946722 -142381625 - MLT1G LTR MaLR -3 587 548 1473 230 111 72 chr4 59946782 59947352 -142380995 - MLT1G1 LTR MaLR -2 593 2 295 305 128 20 chr4 59947356 59947605 -142380742 - L1MC/D LINE L1 -517 5604 5329 210 237 0 34 chr4 59947627 59947686 -142380661 - MIR3 SINE MIR -39 169 113 1996 117 0 0 chr4 59947739 59948005 -142380342 + AluSx SINE Alu 1 266 -46 38 22 0 0 chr4 59948009 59948054 -142380293 + AT_rich Low_complexity Low_complexity 1 45 0 1413 181 85 15 chr4 59949237 59949507 -142378840 - AluJo SINE Alu -18 294 6 544 266 33 128 chr4 59950247 59950646 -142377701 - L2 LINE L2 -2 3270 2910 502 320 43 23 chr4 59951316 59951619 -142376728 + HAL1 LINE L1 256 564 -1943 481 298 88 74 chr4 59951740 59952226 -142376121 + MLT1J LTR MaLR 7 499 -12 2556 77 23 14 chr4 59952362 59952712 -142375635 - L1MA1 LINE L1 0 6302 5950 296 331 90 7 chr4 59953054 59953199 -142375148 - L2 LINE L2 -854 2460 2304 2080 144 0 0 chr4 59956292 59956591 -142371756 + AluSx SINE Alu 1 299 -13 8315 16 0 0 chr4 59957305 59958291 -142370056 - L1PA2 LINE L1 -2 6153 5167 208 273 0 61 chr4 59958840 59958939 -142369408 + T-rich Low_complexity Low_complexity 3 95 0 521 319 58 5 chr4 59959081 59959272 -142369075 - MIR SINE MIR -34 228 28 748 229 133 14 chr4 59959330 59959548 -142368799 + MIR SINE MIR 3 246 -16 514 269 42 72 chr4 59960628 59960892 -142367455 + MER112 DNA MER1_type 1 256 0 333 217 278 30 chr4 59962101 59962235 -142366112 - MIR3 SINE MIR -11 197 26 244 298 75 37 chr4 59962956 59963117 -142365230 + L3b LINE CR1 1303 1469 -114 2172 110 0 35 chr4 59963551 59963870 -142364477 + AluSg SINE Alu 1 308 -2 4649 190 14 13 chr4 59964300 59964831 -142363516 + ERVL-C1 LTR ERVL 2786 3320 -2444 2548 123 31 14 chr4 59964831 59965189 -142363158 + THE1B LTR MaLR 1 364 0 4649 190 14 13 chr4 59965189 59965498 -142362849 + ERVL-C1 LTR ERVL 3320 3627 -2137 1942 124 76 24 chr4 59965500 59965805 -142362542 + MER4D LTR ERV1 1 326 -546 2211 128 3 0 chr4 59965805 59966109 -142362238 - AluSx SINE Alu -7 305 1 1942 124 76 24 chr4 59966109 59966133 -142362214 + MER4D LTR ERV1 326 347 -525 1340 187 12 28 chr4 59966138 59966389 -142361958 + AluJo SINE Alu 5 251 -61 363 165 206 0 chr4 59966401 59966498 -142361849 + MER4D LTR ERV1 341 457 -446 1556 77 0 0 chr4 59966635 59966830 -142361517 + AluSc SINE Alu 115 309 0 2287 131 69 41 chr4 59966831 59967250 -142361097 + MER4D LTR ERV1 442 872 0 2148 164 77 5 chr4 59967250 59967639 -142360708 + ERVL-C1 LTR ERVL 3626 4042 -1722 4259 196 86 16 chr4 59967650 59967718 -142360629 + ERVL-C1 LTR ERVL 4678 4740 -1024 3143 130 58 40 chr4 59967718 59968318 -142360029 - LTR36 LTR ERV1 0 611 1 4259 196 86 16 chr4 59968318 59969215 -142359132 + ERVL-C1 LTR ERVL 4740 5755 -9 1198 223 22 76 chr4 59969216 59969575 -142358772 + MLT2C1 LTR ERVL 1 378 -19 279 54 0 0 chr4 59969575 59969612 -142358735 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 447 19 0 0 chr4 59969614 59969666 -142358681 + (TCCA)n Simple_repeat Simple_repeat 2 53 0 1198 223 22 76 chr4 59969666 59969711 -142358636 + MLT2C1 LTR ERVL 379 386 -11 2042 137 27 0 chr4 59970081 59970381 -142357966 - AluSx SINE Alu -4 308 1 1520 111 36 18 chr4 59971136 59971361 -142356986 - MER30 DNA MER1_type -1 229 1 274 218 0 0 chr4 59971627 59971682 -142356665 + MER46C DNA MER2_type 259 313 -25 333 368 69 38 chr4 59971704 59972022 -142356325 - L2 LINE L2 -21 3251 2924 2214 159 16 0 chr4 59972081 59972446 -142355901 - MLT1B LTR MaLR 0 390 20 23 0 0 0 chr4 59972446 59972469 -142355878 + AT_rich Low_complexity Low_complexity 1 23 0 323 152 196 65 chr4 59972618 59972641 -142355706 + MER31A LTR ERV1 354 373 -112 2409 108 134 8 chr4 59972641 59973021 -142355326 - MSTA LTR MaLR 0 428 1 323 152 196 65 chr4 59973021 59973089 -142355258 + MER31A LTR ERV1 373 457 -28 2657 60 30 0 chr4 59973306 59973639 -142354708 - MER11B LTR ERVK -893 343 1 366 23 0 0 chr4 59974134 59974177 -142354170 + (TG)n Simple_repeat Simple_repeat 1 43 0 422 259 46 8 chr4 59974324 59974455 -142353892 - MER103 DNA DNA -11 155 20 2323 84 0 10 chr4 59975856 59976153 -142352194 - AluSg SINE Alu -16 294 1 22 0 0 0 chr4 59977197 59977219 -142351128 + AT_rich Low_complexity Low_complexity 1 22 0 2252 125 75 66 chr4 59977763 59977832 -142350515 - MSTA LTR MaLR 0 428 361 2251 116 0 0 chr4 59977832 59978133 -142350214 + AluSx SINE Alu 1 301 -11 2252 125 75 66 chr4 59978133 59978299 -142350048 - MSTA LTR MaLR -67 361 198 814 185 80 0 chr4 59978299 59978461 -142349886 - FAM SINE Alu 0 175 1 2252 125 75 66 chr4 59978461 59978648 -142349699 - MSTA LTR MaLR -230 198 1 830 141 39 0 chr4 59978955 59979083 -142349264 - FLAM_A SINE Alu 0 133 1 639 218 32 0 chr4 59979368 59979524 -142348823 + MIR SINE MIR 92 252 -10 2224 102 24 0 chr4 59979528 59979650 -142348697 + AluSq SINE Alu 1 119 -194 279 0 0 0 chr4 59979650 59979681 -142348666 + (CA)n Simple_repeat Simple_repeat 2 32 0 2224 102 24 0 chr4 59979681 59979852 -142348495 + AluSq SINE Alu 119 301 -12 21 0 0 0 chr4 59980289 59980310 -142348037 + AT_rich Low_complexity Low_complexity 1 21 0 2025 151 6 3 chr4 59980461 59980772 -142347575 - AluJb SINE Alu 0 312 1 1988 125 3 26 chr4 59981337 59981642 -142346705 + AluSx SINE Alu 1 298 -14 652 184 6 18 chr4 59982007 59982175 -142346172 + CT-rich Low_complexity Low_complexity 1 166 0 253 332 142 22 chr4 59982311 59982537 -142345810 + L2 LINE L2 3017 3269 -44 3770 94 15 0 chr4 59983500 59984020 -142344327 + L1PA14 LINE L1 5634 6161 0 869 181 7 0 chr4 59984040 59984178 -142344169 + FAM SINE Alu 5 143 -42 380 276 255 5 chr4 59984519 59984715 -142343632 + L3 LINE CR1 1331 1575 -2 589 242 26 7 chr4 59985009 59985162 -142343185 + MER103 DNA DNA 8 163 -3 397 290 69 0 chr4 59985237 59985382 -142342965 - MIR SINE MIR -56 206 52 7376 202 25 26 chr4 59985835 59987783 -142340564 + L1MB4 LINE L1 3602 5555 -619 253 211 35 18 chr4 59987809 59987866 -142340481 - MIR3 SINE MIR -49 159 102 1119 96 0 0 chr4 59987887 59988033 -142340314 - L1P LINE L1 -5990 156 11 7830 19 6 0 chr4 59988034 59989034 -142339313 + L1PA4 LINE L1 5151 6155 0 328 293 47 9 chr4 59989265 59989371 -142338976 + L2 LINE L2 3204 3313 0 2335 133 6 6 chr4 59989807 59990144 -142338203 + MER1B DNA MER1_type 1 337 0 724 280 79 45 chr4 59991201 59991580 -142336767 - MLT1L LTR MaLR 0 615 224 817 131 8 15 chr4 59992903 59993033 -142335314 + FLAM_C SINE Alu 5 133 0 2395 108 0 0 chr4 59993170 59993477 -142334870 + AluSx SINE Alu 1 307 -5 1948 125 197 8 chr4 59993661 59994021 -142334326 - MSTA LTR MaLR 0 428 1 1614 153 7 35 chr4 59994172 59994454 -142333893 - AluJo SINE Alu -19 293 20 753 221 18 0 chr4 59994468 59994631 -142333716 - MIR SINE MIR -41 221 56 2025 161 0 0 chr4 59994838 59995143 -142333204 + AluSx SINE Alu 1 305 -7 1122 38 0 0 chr4 59995143 59995275 -142333072 + AluY SINE Alu 172 303 -8 1396 189 40 51 chr4 59995863 59996019 -142332328 - AluJo SINE Alu -19 293 140 2147 111 21 0 chr4 59996019 59996307 -142332040 - AluSx SINE Alu -17 295 2 1396 189 40 51 chr4 59996307 59996446 -142331901 - AluJo SINE Alu -172 140 1 192 138 17 52 chr4 59996878 59996936 -142331411 + CT-rich Low_complexity Low_complexity 2 57 0 1336 176 77 29 chr4 59996954 59997227 -142331120 - L1PA16 LINE L1 0 6166 5881 471 179 36 0 chr4 59997227 59997311 -142331036 - U6 snRNA snRNA -15 92 6 2655 171 27 2 chr4 59997546 59998026 -142330321 + L1MB4 LINE L1 5687 6178 -2 1768 138 9 62 chr4 59998117 59998442 -142329905 + AluJo SINE Alu 1 308 -4 192 300 161 15 chr4 59998598 59998728 -142329619 + MIR3 SINE MIR 34 182 -26 184 293 179 0 chr4 60000202 60000308 -142328039 + MIR SINE MIR 52 176 -86 1209 174 14 27 chr4 60000375 60000594 -142327753 + MSTB LTR MaLR 211 426 0 2729 145 7 2 chr4 60000594 60001015 -142327332 + MSTB-int LTR MaLR 1 423 -1228 2515 64 0 0 chr4 60001256 60001551 -142326796 - AluY SINE Alu -16 295 1 671 276 139 26 chr4 60001570 60002176 -142326171 + L1MEc LINE L1 789 1462 -4934 2413 154 65 2 chr4 60002194 60002597 -142325750 - MSTA LTR MaLR 0 428 1 1701 168 20 7 chr4 60002675 60002967 -142325380 + AluJo SINE Alu 4 299 -13 982 241 73 32 chr4 60002981 60003359 -142324988 + L1M4 LINE L1 4263 4669 -1477 2180 137 0 6 chr4 60003359 60003673 -142324674 + AluSx SINE Alu 1 312 0 982 241 73 32 chr4 60003673 60003801 -142324546 + L1M4 LINE L1 4669 4790 -1356 230 333 12 58 chr4 60003908 60004079 -142324268 + MIR SINE MIR 95 257 -5 227 265 0 0 chr4 60004089 60004138 -142324209 + (CTA)n Simple_repeat Simple_repeat 2 50 0 207 88 0 0 chr4 60004388 60004422 -142323925 + (TA)n Simple_repeat Simple_repeat 2 35 0 295 58 0 39 chr4 60004847 60004899 -142323448 + (TA)n Simple_repeat Simple_repeat 2 51 0 21 0 0 0 chr4 60005547 60005568 -142322779 + AT_rich Low_complexity Low_complexity 1 21 0 2081 93 9 75 chr4 60006090 60006422 -142321925 - AluSx SINE Alu -2 310 1 1340 194 122 4 chr4 60006512 60006790 -142321557 + AluJo SINE Alu 1 311 -1 1340 152 29 32 chr4 60007832 60008109 -142320238 + AluSx SINE Alu 1 276 -36 189 0 0 0 chr4 60008115 60008136 -142320211 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1823 138 11 18 chr4 60009023 60009305 -142319042 - AluSx SINE Alu -32 280 1 221 269 77 77 chr4 60009371 60009501 -142318846 - L2 LINE L2 -1 3271 3142 198 0 0 0 chr4 60009759 60009781 -142318566 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 317 119 0 59 chr4 60009806 60009907 -142318440 + (TTTTTG)n Simple_repeat Simple_repeat 6 100 0 11986 39 7 1 chr4 60009953 60011622 -142316725 - L1P1 LINE L1 -498 5657 3979 205 191 32 63 chr4 60011827 60011953 -142316394 + (CCCG)n Simple_repeat Simple_repeat 4 125 0 23 0 0 0 chr4 60011970 60011993 -142316354 + GC_rich Low_complexity Low_complexity 1 23 0 1889 167 3 7 chr4 60012253 60012558 -142315789 - AluJb SINE Alu -8 304 1 925 162 61 52 chr4 60012818 60013020 -142315327 + MER33 DNA MER1_type 22 229 -2356 2663 7 0 0 chr4 60013020 60013339 -142315008 + AluYa5 SINE Alu 2 320 0 925 162 61 52 chr4 60013339 60013364 -142314983 + MER33 DNA MER1_type 229 252 -72 2051 146 7 0 chr4 60013832 60014126 -142314221 + AluSx SINE Alu 4 299 -13 2170 108 7 3 chr4 60014247 60014534 -142313813 + AluSx SINE Alu 1 288 -24 3729 137 42 15 chr4 60014548 60015740 -142312607 + L1MA4A LINE L1 4642 5862 -441 1699 73 4 47 chr4 60015742 60015974 -142312373 - AluSc SINE Alu -1 308 87 210 143 0 0 chr4 60016415 60016450 -142311897 + (GGA)n Simple_repeat Simple_repeat 1 35 0 2777 124 68 25 chr4 60018457 60018941 -142309406 - MER84 LTR ERV1 0 507 3 17494 37 1 0 chr4 60019837 60021951 -142306396 + L1P LINE L1 1553 3667 -2479 1730 175 14 0 chr4 60022089 60022381 -142305966 + AluJb SINE Alu 3 298 -14 1802 80 4 0 chr4 60022622 60022848 -142305499 + AluY SINE Alu 70 296 -15 240 244 47 55 chr4 60024754 60024881 -142303466 + MIR3 SINE MIR 78 203 -5 569 250 15 0 chr4 60025709 60025845 -142302502 + MLT2F LTR ERVL 1 138 -525 446 192 58 10 chr4 60025894 60025998 -142302349 + MLT1E1 LTR MaLR 176 284 -370 386 168 65 65 chr4 60026117 60026224 -142302123 + MLT2C2 LTR ERVL 348 454 -10 3658 128 98 11 chr4 60026523 60026972 -142301375 - MER39 LTR ERV1 0 707 182 2189 115 3 10 chr4 60026972 60027276 -142301071 - AluSx SINE Alu -10 302 1 3658 128 98 11 chr4 60027276 60027476 -142300871 - MER39 LTR ERV1 -525 182 1 2133 113 41 0 chr4 60027931 60028224 -142300123 + AluSx SINE Alu 1 305 -7 268 157 130 119 chr4 60028543 60028654 -142299693 + MER34 LTR ERV1 449 540 -2 212 220 17 17 chr4 60028654 60028713 -142299634 - MIR SINE MIR -122 140 82 421 266 42 52 chr4 60028715 60028907 -142299440 + MER110A LTR ERV1 267 456 -12 891 160 6 88 chr4 60028907 60029088 -142299259 - FRAM SINE Alu -12 164 1 2180 127 0 3 chr4 60029855 60030163 -142298184 + AluSx SINE Alu 1 307 -5 183 204 0 0 chr4 60031082 60031126 -142297221 + T-rich Low_complexity Low_complexity 1 44 0 1825 174 0 13 chr4 60031287 60031586 -142296761 + AluJo SINE Alu 1 295 -17 22 0 0 0 chr4 60031586 60031608 -142296739 + AT_rich Low_complexity Low_complexity 1 22 0 1821 161 0 3 chr4 60031729 60032021 -142296326 + AluJo SINE Alu 1 291 -21 427 317 14 0 chr4 60032820 60032965 -142295382 + MIR3 SINE MIR 40 186 -22 1842 133 0 63 chr4 60033002 60033332 -142295015 + AluJb SINE Alu 1 311 0 480 135 0 0 chr4 60033409 60033483 -142294864 + MER20 DNA MER1_type 1 74 -145 201 74 0 0 chr4 60034118 60034145 -142294202 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 186 118 0 0 chr4 60035259 60035293 -142293054 + (A)n Simple_repeat Simple_repeat 1 34 0 296 249 9 103 chr4 60035709 60035922 -142292425 - L2 LINE L2 -43 3270 3078 323 296 141 14 chr4 60035936 60036149 -142292198 - L2 LINE L2 -423 2891 2652 1782 111 0 0 chr4 60036345 60036579 -142291768 + AluSx SINE Alu 57 290 -22 950 158 85 0 chr4 60036596 60036760 -142291587 + FRAM SINE Alu 1 170 -6 36969 38 6 4 chr4 60038364 60042823 -142285524 - L1P LINE L1 -1668 4478 9 1893 130 203 66 chr4 60043149 60043602 -142284745 - MLT2B2 LTR ERVL 0 515 1 1951 117 32 4 chr4 60044603 60044884 -142283463 - AluSg SINE Alu -21 289 1 446 165 38 0 chr4 60044910 60044989 -142283358 + AluS SINE Alu 2 83 -229 358 250 55 55 chr4 60045090 60045153 -142283194 - L1ME1 LINE L1 -58 6108 6046 1761 210 55 3 chr4 60045153 60045500 -142282847 - MLT1A1 LTR MaLR 0 365 1 358 250 55 55 chr4 60045500 60045600 -142282747 - L1ME1 LINE L1 -119 6047 5945 41 36 0 0 chr4 60045624 60045679 -142282668 + AT_rich Low_complexity Low_complexity 1 55 0 673 167 35 35 chr4 60045683 60045827 -142282520 - L1MD1 LINE L1 -314 6426 6283 2930 206 55 57 chr4 60045845 60046713 -142281634 - L1MD1 LINE L1 -1488 5156 4290 1129 220 92 3 chr4 60046715 60047029 -142281318 - L1MD1 LINE L1 -3383 3261 2920 291 240 8 85 chr4 60047096 60047225 -142281122 - L1MD1 LINE L1 -5547 999 869 1821 108 28 93 chr4 60047239 60047563 -142280784 - AluSq SINE Alu -10 303 1 2292 103 0 0 chr4 60047568 60047860 -142280487 - AluSg SINE Alu -18 292 1 437 323 4 26 chr4 60048471 60048697 -142279650 - L1MD1 LINE L1 -6304 238 18 2164 136 10 0 chr4 60049133 60049441 -142278906 + AluSx SINE Alu 1 311 -1 1926 156 0 7 chr4 60049691 60049986 -142278361 + AluJo SINE Alu 1 293 -19 2314 122 0 0 chr4 60050257 60050568 -142277779 - AluSx SINE Alu -1 311 1 10135 53 14 2 chr4 60050754 60052007 -142276340 + L1P LINE L1 1 1268 -4878 1109 251 85 21 chr4 60052366 60052753 -142275594 + LTR40c LTR ERVL 49 460 -5 860 122 103 109 chr4 60053240 60053396 -142274951 - THE1C LTR MaLR 0 375 201 2146 125 7 0 chr4 60053436 60053733 -142274614 + AluSc SINE Alu 9 307 -2 1176 143 65 26 chr4 60053767 60053826 -142274521 - MER65A LTR ERV1 -206 239 184 182 37 37 0 chr4 60053826 60053853 -142274494 + (TG)n Simple_repeat Simple_repeat 2 29 0 1176 143 65 26 chr4 60053853 60054023 -142274324 - MER65A LTR ERV1 -261 184 1 3638 216 90 43 chr4 60054122 60055098 -142273249 - MER65A-int LTR ERV1 -129 4742 3721 233 261 9 63 chr4 60055098 60055209 -142273138 + MER54A LTR ERVL 158 262 -639 823 149 14 7 chr4 60055248 60055396 -142272951 - L1MC1 LINE L1 -430 5903 5755 21 0 0 0 chr4 60055678 60055699 -142272648 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 60056355 60056376 -142271971 + AT_rich Low_complexity Low_complexity 1 21 0 243 152 0 0 chr4 60056692 60056738 -142271609 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr4 60057204 60057226 -142271121 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 60058065 60058087 -142270260 + AT_rich Low_complexity Low_complexity 1 22 0 695 161 8 0 chr4 60059244 60059362 -142268985 - FLAM_A SINE Alu -14 119 1 277 218 126 11 chr4 60059825 60059912 -142268435 - Charlie7 DNA MER1_type -9 2603 2507 551 264 143 69 chr4 60060067 60060390 -142267957 - Charlie7 DNA MER1_type -2128 484 117 1992 146 13 10 chr4 60060390 60060691 -142267656 + AluJb SINE Alu 1 302 -10 551 264 143 69 chr4 60060691 60060814 -142267533 - Charlie7 DNA MER1_type -2495 117 5 1870 103 16 0 chr4 60060959 60061212 -142267135 + AluSq SINE Alu 1 257 -56 190 227 0 0 chr4 60061413 60061457 -142266890 + L3b LINE CR1 1305 1348 -235 187 318 56 9 chr4 60061602 60061709 -142266638 - MIR SINE MIR -57 205 94 389 304 58 23 chr4 60063242 60063413 -142264934 - MIR SINE MIR 0 262 86 305 287 73 29 chr4 60063522 60063658 -142264689 + MIR3 SINE MIR 18 159 -49 1903 150 14 0 chr4 60063814 60064107 -142264240 + AluSx SINE Alu 1 297 -15 555 215 30 37 chr4 60065527 60065662 -142262685 + MER63 DNA MER1_type 1 760 -76 746 237 43 5 chr4 60065770 60065956 -142262391 - LTR65 LTR ERV1 -118 551 359 653 94 7 94 chr4 60065958 60066096 -142262251 + L1MA4 LINE L1 6169 6294 -6 1872 136 4 0 chr4 60066119 60066383 -142261964 + AluJb SINE Alu 1 265 -47 2192 103 4 0 chr4 60066626 60066907 -142261440 - AluSx SINE Alu -30 282 1 204 194 0 0 chr4 60067024 60067060 -142261287 + GA-rich Low_complexity Low_complexity 2 37 0 2198 117 0 0 chr4 60067437 60067735 -142260612 - AluSx SINE Alu -14 298 1 718 121 30 71 chr4 60068023 60068285 -142260062 + L1MA8 LINE L1 5984 6291 0 24 0 0 0 chr4 60068551 60068575 -142259772 + AT_rich Low_complexity Low_complexity 1 24 0 338 274 22 48 chr4 60069280 60069428 -142258919 + MER5A DNA MER1_type 29 184 -5 21 0 0 0 chr4 60070886 60070907 -142257440 + AT_rich Low_complexity Low_complexity 1 21 0 187 247 27 27 chr4 60071532 60071549 -142256798 + MER5A DNA MER1_type 33 49 -140 192 40 0 0 chr4 60071549 60071574 -142256773 + (CAG)n Simple_repeat Simple_repeat 1 25 0 187 247 27 27 chr4 60071574 60071629 -142256718 + MER5A DNA MER1_type 48 105 -84 525 126 126 70 chr4 60071656 60071799 -142256548 - MER96B DNA MER1_type? -14 403 253 30 0 0 0 chr4 60071817 60071847 -142256500 + AT_rich Low_complexity Low_complexity 1 30 0 498 153 0 0 chr4 60071860 60071932 -142256415 - 5S rRNA rRNA -1 120 49 4623 84 8 5 chr4 60071950 60072606 -142255741 - L1PA3 LINE L1 -3 6152 5495 2020 125 20 3 chr4 60072989 60073292 -142255055 - AluSx SINE Alu -4 308 1 2261 108 0 3 chr4 60073451 60073747 -142254600 + AluSq SINE Alu 1 295 -18 256 152 0 0 chr4 60073817 60073863 -142254484 - L1M LINE L1 -693 5428 5383 2284 76 24 3 chr4 60075632 60075923 -142252424 + AluSx SINE Alu 1 297 -15 2072 110 28 0 chr4 60076696 60076987 -142251360 - AluSx SINE Alu -13 299 1 22 35 0 0 chr4 60077309 60077338 -142251009 + AT_rich Low_complexity Low_complexity 1 29 0 1525 166 40 23 chr4 60077338 60077639 -142250708 + AluJo SINE Alu 1 306 -6 2258 106 7 0 chr4 60077674 60077975 -142250372 - AluSc SINE Alu -6 303 1 531 191 124 0 chr4 60078013 60078118 -142250229 + AluJb SINE Alu 142 259 -53 1540 185 7 4 chr4 60078149 60078457 -142249890 - AluJb SINE Alu 0 309 1 232 98 0 73 chr4 60078893 60078934 -142249413 + MER5B DNA MER1_type 6 43 -135 185 242 61 91 chr4 60078937 60079003 -142249344 - MER5B DNA MER1_type -101 77 14 1835 136 93 6 chr4 60079932 60080264 -142248083 - MER46B DNA MER2_type 0 236 1 2089 119 10 7 chr4 60081212 60081515 -142246832 - AluSx SINE Alu -8 304 1 1305 169 131 32 chr4 60081953 60082197 -142246150 + MER2 DNA MER2_type 1 284 -61 1726 144 6 69 chr4 60082197 60082283 -142246064 - AluJo SINE Alu 0 312 222 2338 77 10 19 chr4 60082283 60082595 -142245752 - AluY SINE Alu -2 309 1 1726 144 6 69 chr4 60082595 60082827 -142245520 - AluJo SINE Alu -90 222 14 1305 169 131 32 chr4 60082827 60082896 -142245451 + MER2 DNA MER2_type 284 345 0 200 327 161 60 chr4 60082901 60083299 -142245048 - L2 LINE L2 0 3272 2835 990 180 34 0 chr4 60084127 60084305 -142244042 - MER20 DNA MER1_type 0 219 36 25 0 0 0 chr4 60084668 60084693 -142243654 + AT_rich Low_complexity Low_complexity 1 25 0 2072 111 0 46 chr4 60084698 60085005 -142243342 + AluSx SINE Alu 3 295 -17 252 0 0 0 chr4 60085057 60085085 -142243262 + (CA)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr4 60085210 60085234 -142243113 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 60085325 60085353 -142242994 + AT_rich Low_complexity Low_complexity 1 28 0 855 214 75 21 chr4 60085569 60085782 -142242565 + MER20 DNA MER1_type 2 219 0 2212 74 46 0 chr4 60086195 60086478 -142241869 + AluSp SINE Alu 1 296 -17 709 188 8 8 chr4 60086692 60086825 -142241522 - FLAM_C SINE Alu -10 133 1 23 0 0 0 chr4 60086852 60086875 -142241472 + AT_rich Low_complexity Low_complexity 1 23 0 31 0 0 0 chr4 60087293 60087324 -142241023 + AT_rich Low_complexity Low_complexity 1 31 0 25 65 0 0 chr4 60088049 60088095 -142240252 + AT_rich Low_complexity Low_complexity 1 46 0 2175 104 3 0 chr4 60088199 60088488 -142239859 + AluSx SINE Alu 1 290 -22 1879 118 16 40 chr4 60089009 60089313 -142239034 - AluSx SINE Alu -15 297 1 180 111 0 0 chr4 60089321 60089348 -142238999 + (T)n Simple_repeat Simple_repeat 1 27 0 2871 16 0 0 chr4 60089917 60090235 -142238112 + AluYb8 SINE Alu 1 318 0 264 248 46 64 chr4 60091583 60091692 -142236655 - MER5A DNA MER1_type -22 167 61 748 245 180 36 chr4 60091811 60092558 -142235789 - HAL1 LINE L1 -1491 1016 1 3298 109 24 40 chr4 60093068 60093600 -142234747 + MER1A DNA MER1_type 4 527 0 1972 134 3 13 chr4 60094094 60094392 -142233955 + AluSx SINE Alu 1 295 -17 318 50 0 0 chr4 60094583 60094623 -142233724 + (TG)n Simple_repeat Simple_repeat 1 40 0 761 179 7 7 chr4 60094658 60094798 -142233549 + MLT1A2 LTR MaLR 1 140 -234 822 147 159 0 chr4 60094948 60095105 -142233242 + MER5A DNA MER1_type 7 188 -1 689 216 0 8 chr4 60095446 60095580 -142232767 + FLAM_A SINE Alu 1 133 0 890 256 52 19 chr4 60097661 60097931 -142230416 + MER21B LTR ERV1 1 279 -584 2576 175 62 54 chr4 60098077 60098227 -142230120 - L1MB7 LINE L1 -10 6174 6027 2275 87 0 7 chr4 60098227 60098527 -142229820 + AluSc SINE Alu 2 299 -10 2576 175 62 54 chr4 60098527 60098861 -142229486 - L1MB7 LINE L1 -157 6027 5681 3004 141 91 4 chr4 60098861 60099423 -142228924 - L1MB3 LINE L1 -8 6175 5565 2576 175 62 54 chr4 60099423 60099571 -142228776 - L1MB7 LINE L1 -503 5681 5536 842 152 0 0 chr4 60099632 60099764 -142228583 + FLAM_A SINE Alu 2 133 0 252 311 47 38 chr4 60101620 60101726 -142226621 + MIR SINE MIR 16 122 -86 588 198 239 42 chr4 60101814 60102077 -142226270 - L1ME3 LINE L1 -67 6095 5781 732 142 0 18 chr4 60102082 60102195 -142226152 + AluJb SINE Alu 1 111 -201 560 222 192 54 chr4 60102224 60102392 -142225955 - L1M3 LINE L1 -402 5768 5600 747 147 0 0 chr4 60102393 60102509 -142225838 - MIR SINE MIR -40 222 107 311 283 0 33 chr4 60102507 60102599 -142225748 + L2 LINE L2 3140 3228 -44 * 304 238 60 0 chr4 60102903 60102987 -142225360 - MIR SINE MIR -71 137 49 2161 124 7 0 chr4 60104351 60104649 -142223698 + AluSx SINE Alu 1 300 -12 1971 50 11 23 chr4 60104649 60104909 -142223438 + AluY SINE Alu 41 297 -14 248 154 19 0 chr4 60105198 60105250 -142223097 + (TA)n Simple_repeat Simple_repeat 1 53 0 213 39 0 0 chr4 60105634 60105660 -142222687 + (A)n Simple_repeat Simple_repeat 1 26 0 2336 59 10 3 chr4 60105936 60106226 -142222121 - AluSc SINE Alu -17 292 1 22 70 0 0 chr4 60107762 60107805 -142220542 + AT_rich Low_complexity Low_complexity 1 43 0 201 132 0 0 chr4 60107819 60107857 -142220490 + (TA)n Simple_repeat Simple_repeat 1 38 0 687 112 19 0 chr4 60108299 60108406 -142219941 + AluSg/x SINE Alu 198 306 -4 359 277 136 74 chr4 60108889 60109279 -142219068 - L1ME4a LINE L1 -99 6022 5609 310 305 80 26 chr4 60109409 60109560 -142218787 - L1ME4a LINE L1 -693 5428 5270 972 172 11 11 chr4 60109975 60110155 -142218192 - AluSg/x SINE Alu -2 308 129 223 307 74 61 chr4 60110676 60110839 -142217508 + MIR SINE MIR 92 256 -6 * 1119 247 41 0 chr4 60110821 60111064 -142217283 - MIR SINE MIR -2 260 8 1173 183 74 53 chr4 60111467 60111804 -142216543 + L1ME LINE L1 5040 5386 -780 1926 157 7 0 chr4 60111804 60112098 -142216249 + AluJo SINE Alu 2 297 -15 1173 183 74 53 chr4 60112098 60112308 -142216039 + L1ME LINE L1 5386 5590 -576 1025 164 0 0 chr4 60112662 60112821 -142215526 + AluJb SINE Alu 1 159 -153 2332 189 73 45 chr4 60112893 60112913 -142215434 + MLT1F1 LTR MaLR 8 26 -541 2307 106 0 0 chr4 60112913 60113215 -142215132 + AluSg SINE Alu 1 302 -8 2332 189 73 45 chr4 60113215 60113301 -142215046 + MLT1F1 LTR MaLR 26 108 -459 1812 179 0 3 chr4 60113301 60113597 -142214750 - AluJb SINE Alu -17 295 1 2332 189 73 45 chr4 60113597 60114024 -142214323 + MLT1F1 LTR MaLR 108 557 -10 496 282 7 21 chr4 60114026 60114168 -142214179 - MIR SINE MIR -108 154 15 245 227 0 0 chr4 60115198 60115215 -142213132 + (TAA)n Simple_repeat Simple_repeat 1 17 -58 1990 126 7 0 chr4 60115215 60115501 -142212846 + AluSq SINE Alu 1 288 -25 245 227 0 0 chr4 60115501 60115558 -142212789 + (TAA)n Simple_repeat Simple_repeat 16 75 0 24 32 0 0 chr4 60116349 60116380 -142211967 + AT_rich Low_complexity Low_complexity 1 31 0 1645 163 65 14 chr4 60116692 60116986 -142211361 + AluJo SINE Alu 1 309 -3 29 0 0 0 chr4 60117174 60117203 -142211144 + AT_rich Low_complexity Low_complexity 1 29 0 1702 167 165 51 chr4 60117233 60117436 -142210911 + MLT2B1 LTR ERVL 1 180 -340 1974 153 3 7 chr4 60117436 60117737 -142210610 - AluSx SINE Alu -12 300 1 1702 167 165 51 chr4 60117737 60118000 -142210347 + MLT2B1 LTR ERVL 180 520 0 190 267 0 0 chr4 60118009 60118054 -142210293 + MIR SINE MIR 70 114 -148 655 221 15 7 chr4 60118066 60118202 -142210145 - FAM SINE Alu -44 141 5 480 242 68 0 chr4 60118211 60118343 -142210004 + MIR SINE MIR 101 241 -21 23 0 0 0 chr4 60120475 60120498 -142207849 + AT_rich Low_complexity Low_complexity 1 23 0 1729 183 13 13 chr4 60120635 60120958 -142207389 - AluJb SINE Alu 0 323 1 25 31 0 0 chr4 60121994 60122026 -142206321 + AT_rich Low_complexity Low_complexity 1 32 0 8168 27 8 4 chr4 60122168 60123840 -142204507 + L1PA4 LINE L1 4480 6155 0 1817 137 0 57 chr4 60124609 60124924 -142203423 + AluSg SINE Alu 5 301 -9 336 119 0 51 chr4 60124985 60125044 -142203303 + MLT1A1 LTR MaLR 3 58 -307 1693 141 47 0 chr4 60125044 60125321 -142203026 + AluSx SINE Alu 1 290 -22 297 109 0 0 chr4 60125321 60125367 -142202980 + (GA)n Simple_repeat Simple_repeat 1 46 0 1654 168 76 13 chr4 60125397 60125700 -142202647 + MLT1A1 LTR MaLR 44 365 0 209 235 235 0 chr4 60125726 60125811 -142202536 - MIR SINE MIR -70 192 88 35 0 0 0 chr4 60127584 60127619 -142200728 + AT_rich Low_complexity Low_complexity 1 35 0 1756 174 7 3 chr4 60127634 60127933 -142200414 + AluSx SINE Alu 1 300 -12 1778 167 0 3 chr4 60127961 60128243 -142200104 + AluJb SINE Alu 1 281 -31 1331 183 4 17 chr4 60128384 60128624 -142199723 - AluJb SINE Alu -75 237 1 912 142 7 0 chr4 60128685 60128826 -142199521 - FLAM_C SINE Alu -1 142 1 26 50 0 0 chr4 60129580 60129620 -142198727 + AT_rich Low_complexity Low_complexity 1 40 0 2659 135 33 26 chr4 60129950 60130380 -142197967 + Tigger2a DNA MER2_type 2 434 0 2402 77 13 13 chr4 60132409 60132721 -142195626 + AluSp SINE Alu 1 312 -1 3880 116 15 17 chr4 60133406 60133934 -142194413 - MER1A DNA MER1_type 0 527 1 3461 204 77 50 chr4 60135180 60136000 -142192347 + MER21B LTR ERV1 1 842 -21 256 213 33 16 chr4 60136175 60136236 -142192111 + MER5A DNA MER1_type 106 167 -22 514 139 0 0 chr4 60136776 60136855 -142191492 - L1MB5 LINE L1 -10 6164 6086 2407 100 3 0 chr4 60137180 60137489 -142190858 - AluSp SINE Alu -3 310 1 1563 196 70 82 chr4 60137844 60138027 -142190320 + LTR24B LTR ERV1 1 185 -450 2305 77 7 7 chr4 60138027 60138325 -142190022 + AluSc SINE Alu 1 298 -11 1563 196 70 82 chr4 60138325 60138387 -142189960 + LTR24B LTR ERV1 185 246 -389 2135 55 0 0 chr4 60138387 60138644 -142189703 + AluY SINE Alu 44 300 -11 1563 196 70 82 chr4 60138644 60138984 -142189363 + LTR24B LTR ERV1 246 635 0 765 236 22 22 chr4 60138997 60139175 -142189172 - MIR SINE MIR -73 189 12 255 175 70 0 chr4 60139285 60139342 -142189005 + L1ME4a LINE L1 6061 6121 0 285 29 0 0 chr4 60140770 60140804 -142187543 + (A)n Simple_repeat Simple_repeat 1 34 0 216 343 143 23 chr4 60142127 60142180 -142186167 + L2 LINE L2 2324 2369 -945 1422 184 67 11 chr4 60142180 60142462 -142185885 - AluJb SINE Alu -14 298 1 216 343 143 23 chr4 60142462 60142708 -142185639 + L2 LINE L2 2369 2659 -655 23 0 0 0 chr4 60142743 60142766 -142185581 + AT_rich Low_complexity Low_complexity 1 23 0 2372 56 3 10 chr4 60144931 60145233 -142183114 + AluSx SINE Alu 1 300 -12 232 219 0 41 chr4 60145334 60145407 -142182940 + (TG)n Simple_repeat Simple_repeat 2 71 0 378 0 0 0 chr4 60145475 60145517 -142182830 + (TG)n Simple_repeat Simple_repeat 2 43 0 2365 85 0 3 chr4 60145758 60146064 -142182283 + AluSc SINE Alu 1 305 -4 22 35 0 0 chr4 60146462 60146491 -142181856 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 60146547 60146575 -142181772 + AT_rich Low_complexity Low_complexity 1 28 0 234 91 0 0 chr4 60146592 60146625 -142181722 + (TA)n Simple_repeat Simple_repeat 1 33 0 271 210 20 60 chr4 60146989 60147089 -142181258 + (CACCC)n Simple_repeat Simple_repeat 3 98 0 297 0 0 0 chr4 60147564 60147597 -142180750 + (TA)n Simple_repeat Simple_repeat 1 33 0 2067 113 0 23 chr4 60147617 60147919 -142180428 - AluSx SINE Alu -4 308 14 546 166 243 0 chr4 60147924 60148116 -142180231 - MER33 DNA MER1_type -266 58 1 2250 112 3 0 chr4 60148424 60148729 -142179618 - AluSx SINE Alu -6 306 1 293 289 34 101 chr4 60148810 60148837 -142179510 + L2 LINE L2 2566 2593 -721 1317 200 111 11 chr4 60148837 60149117 -142179230 - AluSg SINE Alu -2 308 1 293 289 34 101 chr4 60149117 60149238 -142179109 + L2 LINE L2 2593 2704 -610 189 346 26 26 chr4 60150530 60150608 -142177739 + MIR SINE MIR 16 93 -115 21 0 0 0 chr4 60150737 60150758 -142177589 + AT_rich Low_complexity Low_complexity 1 21 0 460 271 50 22 chr4 60151372 60151553 -142176794 - L3 LINE CR1 -189 1388 1203 2063 121 0 21 chr4 60152362 60152684 -142175663 - AluSx SINE Alu 0 316 1 2888 181 25 35 chr4 60253222 60254100 -142074247 + L1MC2 LINE L1 4964 5830 -514 1322 165 22 0 chr4 60254100 60254324 -142074023 + MSTB LTR MaLR 1 229 -197 602 200 240 13 chr4 60254345 60254513 -142073834 + MSTB LTR MaLR 5 211 -215 31 44 0 0 chr4 60254682 60254727 -142073620 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr4 60254816 60254842 -142073505 + AT_rich Low_complexity Low_complexity 1 26 0 194 91 30 0 chr4 60255038 60255071 -142073276 + (CA)n Simple_repeat Simple_repeat 2 35 0 1230 99 23 0 chr4 60255621 60255792 -142072555 + AluSx SINE Alu 2 176 -136 1061 175 6 5 chr4 60255902 60256976 -142071371 + ALR/Alpha Satellite centromeric 1 1074 -34 471 157 157 50 chr4 60257171 60257311 -142071036 - MER50 LTR ERV1 -579 155 1 229 279 77 10 chr4 60257796 60257900 -142070447 + L1M4 LINE L1 4754 4864 -1282 2609 153 25 18 chr4 60257907 60258499 -142069848 - MER4E LTR ERV1 0 766 1 823 136 0 8 chr4 60258503 60258628 -142069719 + MLT2A2 LTR ERVL 1 124 -329 974 183 9 3 chr4 60258732 60259944 -142068403 + ALR/Alpha Satellite centromeric 1 1219 -36 1123 124 0 0 chr4 60260048 60260193 -142068154 - AluSq/x SINE Alu -168 145 1 929 261 8 48 chr4 60260310 60260578 -142067769 - MIR SINE MIR 0 262 6 2554 68 0 0 chr4 60260659 60260970 -142067377 + AluY SINE Alu 1 311 0 1928 127 19 32 chr4 60262153 60262469 -142065878 - AluSx SINE Alu 0 312 1 432 204 0 11 chr4 60263223 60263311 -142065036 - L2 LINE L2 -4 3309 3223 520 278 156 6 chr4 60263376 60263556 -142064791 - MIR SINE MIR -37 225 19 1969 98 105 0 chr4 60263940 60264216 -142064131 + AluSx SINE Alu 1 305 -7 582 219 32 134 chr4 60264782 60264895 -142063452 - MIR SINE MIR -13 249 173 1705 137 31 0 chr4 60264895 60265150 -142063197 - AluJb SINE Alu -49 263 1 582 219 32 134 chr4 60265150 60265282 -142063065 - MIR SINE MIR -89 173 29 506 185 100 23 chr4 60265349 60265479 -142062868 + L2 LINE L2 3160 3299 -14 936 274 94 41 chr4 60265648 60266159 -142062188 - MLT1L LTR MaLR -47 568 31 595 268 103 23 chr4 60266929 60267163 -142061184 + MIR SINE MIR 1 250 -12 653 86 0 0 chr4 60267781 60267862 -142060485 - AluSg/x SINE Alu -20 290 210 222 191 0 0 chr4 60267888 60267935 -142060412 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 * 413 130 68 12 chr4 60267933 60268094 -142060253 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 22 56 0 0 chr4 60268094 60268130 -142060217 + AT_rich Low_complexity Low_complexity 1 36 0 297 79 56 22 chr4 60268132 60268221 -142060126 + (TATAA)n Simple_repeat Simple_repeat 3 94 0 337 51 89 13 chr4 60268349 60268428 -142059919 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 859 172 0 0 chr4 60268428 60268556 -142059791 - AluSq/x SINE Alu -184 128 1 251 337 12 12 chr4 60269207 60269293 -142059054 - MIR SINE MIR -169 93 8 262 313 12 0 chr4 60269676 60269756 -142058591 + MIR3 SINE MIR 83 163 -45 240 111 0 0 chr4 60270173 60270209 -142058138 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 887 135 6 22 chr4 60270234 60270412 -142057935 + (GGAA)n Simple_repeat Simple_repeat 4 178 0 311 180 0 0 chr4 60270416 60270466 -142057881 + polypurine Low_complexity Low_complexity 3 52 0 869 185 6 0 chr4 60270466 60270644 -142057703 + GA-rich Low_complexity Low_complexity 2 180 0 371 275 135 34 chr4 60271081 60271141 -142057206 + MIR SINE MIR 3 56 -206 505 274 9 0 chr4 60271141 60271254 -142057093 - MER81 DNA DNA 0 114 1 371 275 135 34 chr4 60271254 60271371 -142056976 + MIR SINE MIR 56 198 -64 650 227 236 55 chr4 60272715 60273233 -142055114 - MLT1F1 LTR MaLR 0 567 3 26 30 0 0 chr4 60273270 60273303 -142055044 + AT_rich Low_complexity Low_complexity 1 33 0 2173 103 3 3 chr4 60273382 60273682 -142054665 - AluSp SINE Alu -13 300 1 306 114 0 0 chr4 60273718 60273762 -142054585 - MLT1B LTR MaLR -2 388 345 3165 155 11 78 chr4 60273903 60274391 -142053956 + L1MB3 LINE L1 5518 6037 -146 1666 176 3 26 chr4 60274391 60274703 -142053644 + AluJb SINE Alu 5 309 -3 3165 155 11 78 chr4 60274703 60274764 -142053583 + L1MB3 LINE L1 6037 6101 -82 2068 112 78 32 chr4 60274764 60275112 -142053235 - THE1B LTR MaLR 0 364 1 3165 155 11 78 chr4 60275112 60275264 -142053083 + L1MB3 LINE L1 6101 6173 -10 1711 146 31 17 chr4 60275278 60275572 -142052775 + AluJo SINE Alu 1 298 -14 408 298 26 9 chr4 60275585 60275699 -142052648 - MIR SINE MIR -64 144 29 2749 7 0 0 chr4 60275724 60276029 -142052318 + AluY SINE Alu 2 306 -5 2033 115 3 0 chr4 60276039 60276326 -142052021 + AluSg SINE Alu 3 290 -20 670 273 184 32 chr4 60277117 60277634 -142050713 - L2 LINE L2 -16 3297 2712 933 118 0 15 chr4 60277768 60277903 -142050444 + FLAM_C SINE Alu 1 133 0 677 138 0 8 chr4 60277906 60278029 -142050318 + (GAA)n Simple_repeat Simple_repeat 2 123 0 186 271 0 0 chr4 60278702 60278750 -142049597 - L2 LINE L2 -1 3312 3265 4330 237 40 5 chr4 60279051 60280040 -142048307 + MER69 DNA AcHobo 19 1042 -1484 1034 92 0 7 chr4 60280087 60280228 -142048119 + AluSq/x SINE Alu 1 140 -172 1719 134 0 0 chr4 60280228 60280490 -142047857 + AluSq SINE Alu 41 302 -11 26 50 0 0 chr4 60280522 60280562 -142047785 + AT_rich Low_complexity Low_complexity 1 40 0 475 176 19 205 chr4 60280564 60280871 -142047476 + MER69 DNA AcHobo 2277 2526 0 2835 82 3 3 chr4 60281056 60281420 -142046927 - THE1B LTR MaLR 0 364 1 698 260 97 19 chr4 60281637 60281895 -142046452 + MLT1J LTR MaLR 1 278 -233 1958 120 14 0 chr4 60281923 60282199 -142046148 + AluSx SINE Alu 1 280 -32 336 24 0 0 chr4 60282201 60282242 -142046105 + (CA)n Simple_repeat Simple_repeat 2 42 0 3020 203 16 12 chr4 60282275 60282427 -142045920 - MER119 DNA MER1_type 0 583 433 2391 207 23 38 chr4 60282427 60282954 -142045393 - LTR40a LTR ERVL 0 519 1 3020 203 16 12 chr4 60282954 60283382 -142044965 - MER119 DNA MER1_type -150 433 1 234 305 76 30 chr4 60283429 60283560 -142044787 + MLT1J LTR MaLR 375 511 0 258 180 16 66 chr4 60283667 60283728 -142044619 - L2 LINE L2 -2 3270 3213 5190 173 5 38 chr4 60283766 60284646 -142043701 + MER49 LTR ERV1 5 912 -11 3393 18 0 0 chr4 60284646 60285027 -142043320 + L1PA3 LINE L1 5771 6151 -4 5190 173 5 38 chr4 60285027 60285054 -142043293 + MER49 LTR ERV1 912 883 -40 2003 143 3 0 chr4 60285054 60285354 -142042993 + AluSx SINE Alu 1 301 -11 5190 173 5 38 chr4 60285354 60285395 -142042952 + MER49 LTR ERV1 882 923 0 470 157 12 12 chr4 60286391 60286474 -142041873 - MER6 DNA MER2_type -4 861 779 775 118 8 25 chr4 60286478 60286597 -142041750 - AluSq/x SINE Alu -179 134 18 27 73 0 0 chr4 60287060 60287115 -142041232 + AT_rich Low_complexity Low_complexity 1 55 0 1455 171 45 8 chr4 60287126 60287390 -142040957 + AluJo SINE Alu 1 274 -38 635 247 89 16 chr4 60287504 60287694 -142040653 - MIR SINE MIR -46 216 13 1664 156 28 0 chr4 60287825 60288114 -142040233 - AluJb SINE Alu -15 297 1 1872 138 0 0 chr4 60288241 60288516 -142039831 - AluSx SINE Alu -37 275 1 728 179 8 22 chr4 60288531 60288665 -142039682 - FLAM_A SINE Alu -1 132 1 229 280 70 30 chr4 60288801 60288901 -142039446 + L1MEd LINE L1 304 407 -5712 1724 153 61 3 chr4 60288962 60289257 -142039090 + AluSx SINE Alu 1 312 0 376 283 73 70 chr4 60289305 60289591 -142038756 + L1MEd LINE L1 513 799 -5320 2175 102 0 0 chr4 60289737 60290031 -142038316 + AluSc SINE Alu 1 294 -15 2402 216 70 25 chr4 60290129 60290726 -142037621 + LTR48B LTR ERV1 1 624 -20 1968 71 64 24 chr4 60290905 60291201 -142037146 + AluY SINE Alu 1 308 -3 2047 93 6 37 chr4 60291247 60291568 -142036779 - AluSq SINE Alu -2 311 1 384 301 68 15 chr4 60292337 60292470 -142035877 + L1MC4a LINE L1 5741 5880 -1928 24 53 0 0 chr4 60292484 60292522 -142035825 + AT_rich Low_complexity Low_complexity 1 38 0 30 27 0 0 chr4 60292582 60292619 -142035728 + AT_rich Low_complexity Low_complexity 1 37 0 2165 109 0 0 chr4 60292619 60292912 -142035435 - AluSx SINE Alu -14 298 6 1736 172 0 3 chr4 60292918 60293214 -142035133 - AluJb SINE Alu -17 295 1 237 201 58 123 chr4 60293236 60293282 -142035065 + L1MC/D LINE L1 5739 5786 -2022 2139 96 0 7 chr4 60293282 60293573 -142034774 + AluSg SINE Alu 1 289 -21 237 201 58 123 chr4 60293573 60293680 -142034667 + L1MC/D LINE L1 5786 5882 -1926 1791 172 0 0 chr4 60293682 60293979 -142034368 - AluJo SINE Alu -15 297 1 1805 120 6 71 chr4 60294276 60294601 -142033746 + AluSx SINE Alu 1 304 -8 1144 229 110 43 chr4 60295125 60295385 -142032962 - MLT1D LTR MaLR -8 497 256 2114 86 3 7 chr4 60295385 60295675 -142032672 - AluSp SINE Alu -13 300 12 1144 229 110 43 chr4 60295675 60295876 -142032471 - MLT1D LTR MaLR -249 256 5 21 36 0 0 chr4 60297177 60297205 -142031142 + AT_rich Low_complexity Low_complexity 1 28 0 565 179 185 13 chr4 60297636 60297787 -142030560 + MER96B DNA MER1_type? 2 178 -239 1631 142 8 11 chr4 60297834 60298102 -142030245 - AluJo SINE Alu -15 297 31 4344 107 8 20 chr4 60298102 60298622 -142029725 + MER41B LTR ERV1 1 513 -122 2289 90 0 3 chr4 60298622 60298932 -142029415 - AluY SINE Alu -2 309 1 4344 107 8 20 chr4 60298932 60299054 -142029293 + MER41B LTR ERV1 513 635 0 229 176 0 0 chr4 60299054 60299088 -142029259 - AluJo SINE Alu -267 34 1 1038 128 0 0 chr4 60299304 60299452 -142028895 + LTR8A LTR ERV1 4 151 -576 3691 130 22 25 chr4 60300574 60301168 -142027179 + LTR8A LTR ERV1 136 727 0 663 267 62 18 chr4 60301226 60301451 -142026896 + LTR33 LTR ERVL 1 235 -286 434 274 188 5 chr4 60301477 60301663 -142026684 + LTR33 LTR ERVL 295 514 -7 1389 166 0 17 chr4 60302472 60302713 -142025634 - MLT1C LTR MaLR -230 237 1 278 336 59 0 chr4 60303287 60303406 -142024941 - MIR SINE MIR -77 185 60 10488 40 3 69 chr4 60303654 60305132 -142023215 - SVA Other Other -6 1380 1 2105 129 7 0 chr4 60305746 60306056 -142022291 - AluSx SINE Alu 0 312 1 1516 228 28 14 chr4 60306405 60306765 -142021582 - MLT1A1 LTR MaLR 0 365 1 29 28 0 0 chr4 60306880 60306916 -142021431 + AT_rich Low_complexity Low_complexity 1 36 0 5883 86 19 25 chr4 60307087 60307156 -142021191 + L1PA10 LINE L1 5328 5396 -772 2296 74 0 26 chr4 60307156 60307468 -142020879 + AluSg SINE Alu 1 304 -6 5883 86 19 25 chr4 60307468 60308239 -142020108 + L1PA10 LINE L1 5396 6163 -5 570 327 54 10 chr4 60308524 60308729 -142019618 + MIR SINE MIR 12 225 -37 454 338 103 0 chr4 60308746 60308959 -142019388 - MIR SINE MIR -5 257 23 267 337 103 48 chr4 60309151 60309673 -142018674 + L2 LINE L2 2424 2974 -340 809 269 78 7 chr4 60309934 60310178 -142018169 + MIR SINE MIR 3 262 0 359 313 229 5 chr4 60310202 60310394 -142017953 - MIR SINE MIR -21 241 7 240 220 121 44 chr4 60310536 60310627 -142017720 + MLT1J LTR MaLR 1 98 -413 758 213 132 0 chr4 60310627 60310824 -142017523 - MER58A DNA MER1_type 0 224 2 1300 198 54 92 chr4 60310869 60311307 -142017040 + MLT2C2 LTR ERVL 3 423 -41 423 0 0 0 chr4 60311307 60311354 -142016993 + (CA)n Simple_repeat Simple_repeat 2 48 0 1300 198 54 92 chr4 60311354 60311395 -142016952 + MLT2C2 LTR ERVL 423 464 0 911 218 203 38 chr4 60311400 60311649 -142016698 + MLT1J LTR MaLR 109 430 -81 4252 133 1 19 chr4 60311649 60312295 -142016052 + MER41B LTR ERV1 1 635 0 911 218 203 38 chr4 60312295 60312385 -142015962 + MLT1J LTR MaLR 430 504 -7 180 0 0 0 chr4 60312562 60312582 -142015765 + (GA)n Simple_repeat Simple_repeat 1 20 0 845 252 117 11 chr4 60313133 60313399 -142014948 + MLT1L LTR MaLR 322 615 0 884 239 63 10 chr4 60313544 60313749 -142014598 + MIR SINE MIR 34 249 -13 207 69 0 0 chr4 60315261 60315290 -142013057 + (CAA)n Simple_repeat Simple_repeat 2 30 0 493 229 42 0 chr4 60315760 60315878 -142012469 + L2 LINE L2 2422 2544 -770 1301 203 62 62 chr4 60315878 60315950 -142012397 - MLT2C1 LTR ERVL 0 397 326 2491 112 5 48 chr4 60315950 60316344 -142012003 - MER51B LTR ERV1 0 377 1 1301 203 62 62 chr4 60316344 60316656 -142011691 - MLT2C1 LTR ERVL -70 327 13 352 259 21 111 chr4 60316697 60316886 -142011461 + L2 LINE L2 2572 2743 -571 2014 184 27 95 chr4 60316886 60317363 -142010984 + MLT1D LTR MaLR 1 440 -65 2181 98 3 0 chr4 60317363 60317668 -142010679 - AluSg SINE Alu -4 306 1 2014 184 27 95 chr4 60317668 60317716 -142010631 + MLT1D LTR MaLR 440 490 -15 327 206 191 14 chr4 60317724 60317865 -142010482 + L2 LINE L2 2738 2903 -411 582 151 184 20 chr4 60317865 60318017 -142010330 + MER96B DNA MER1_type? 3 179 -238 576 251 278 27 chr4 60318035 60318243 -142010104 + L2 LINE L2 2850 3004 -309 2591 117 11 11 chr4 60318243 60318618 -142009729 - THE1C LTR MaLR 0 375 1 576 251 278 27 chr4 60318618 60318779 -142009568 + L2 LINE L2 3004 3312 -1 232 197 15 15 chr4 60318779 60318845 -142009502 + GA-rich Low_complexity Low_complexity 1 66 0 2045 111 9 32 chr4 60319265 60319580 -142008767 - AluSx SINE Alu -4 308 1 258 257 7 121 chr4 60320052 60320192 -142008155 + MIR SINE MIR 33 156 -106 180 125 0 0 chr4 60320515 60320547 -142007800 + (TG)n Simple_repeat Simple_repeat 1 32 0 504 281 143 29 chr4 60320564 60320774 -142007573 + MIR SINE MIR 29 262 0 180 0 0 0 chr4 60321436 60321456 -142006891 + (TAA)n Simple_repeat Simple_repeat 1 20 0 7825 174 104 10 chr4 60321741 60323270 -142005077 + MER52A LTR ERV1 1 1753 -2 321 221 58 29 chr4 60323273 60323377 -142004970 - L1MC/D LINE L1 -2019 5789 5683 42605 61 5 1 chr4 60323426 60329556 -141998791 + L1PA5 LINE L1 2 6153 -1 235 264 236 51 chr4 60329565 60329781 -141998566 - L1MC/D LINE L1 -482 5639 5384 2245 105 0 22 chr4 60329820 60330156 -141998191 - AluSc SINE Alu 0 309 1 373 153 0 45 chr4 60330215 60330326 -141998021 + (TA)n Simple_repeat Simple_repeat 1 106 0 1593 182 36 19 chr4 60330824 60331131 -141997216 + AluJo SINE Alu 1 312 0 308 245 224 0 chr4 60331146 60331244 -141997103 - MLT1E LTR MaLR -265 328 209 1476 187 75 0 chr4 60331244 60331522 -141996825 + AluJb SINE Alu 1 299 -13 297 229 92 53 chr4 60331900 60332031 -141996316 - L1ME LINE L1 -508 5613 5478 333 0 0 0 chr4 60332078 60332115 -141996232 + (TA)n Simple_repeat Simple_repeat 2 38 0 682 154 24 71 chr4 60332136 60332305 -141996042 + MER21A LTR ERV1 1 161 -770 231 220 130 30 chr4 60332470 60332570 -141995777 - LTR16A1 LTR ERVL 0 457 348 1489 189 131 31 chr4 60332732 60333092 -141995255 + MSTD LTR MaLR 1 396 0 262 152 0 22 chr4 60333276 60333322 -141995025 + MLT1J LTR MaLR 105 149 -362 274 218 39 13 chr4 60333381 60333459 -141994888 + MLT1I LTR MaLR 318 397 -12 1944 141 159 8 chr4 60334295 60334665 -141993682 - MSTA LTR MaLR 0 428 3 340 94 0 0 chr4 60334876 60334929 -141993418 + L1MC4a LINE L1 6435 6487 -1321 324 238 50 50 chr4 60334925 60335026 -141993321 - L1ME3 LINE L1 -11 6151 6051 * 357 173 0 0 chr4 60335039 60335091 -141993256 + Alu SINE Alu 1 52 -248 1772 220 61 12 chr4 60335106 60335534 -141992813 - L1ME3 LINE L1 -120 6042 5594 1210 145 0 74 chr4 60335547 60335789 -141992558 - AluSg/x SINE Alu -23 289 66 240 167 0 0 chr4 60335983 60336019 -141992328 - L1ME3 LINE L1 -564 5606 5571 1767 136 3 27 chr4 60336044 60336345 -141992002 + AluJb SINE Alu 6 299 -13 2320 100 0 16 chr4 60337143 60337453 -141990894 + AluSq SINE Alu 1 305 -8 284 276 26 0 chr4 60337540 60337616 -141990731 + L1ME3 LINE L1 6079 6156 -6 1209 223 22 4 chr4 60337775 60338048 -141990299 - L1MD2 LINE L1 -29 6330 6053 2032 137 0 7 chr4 60338137 60338430 -141989917 - AluSx SINE Alu -21 291 1 414 316 78 22 chr4 60338684 60338915 -141989432 + MLT1L LTR MaLR 368 611 -4 6043 183 25 47 chr4 60338915 60339134 -141989213 + L1M4 LINE L1 4001 4223 -1951 1585 140 124 0 chr4 60339134 60339391 -141988956 + AluSx SINE Alu 1 289 -23 6043 183 25 47 chr4 60339391 60339744 -141988603 + L1M4 LINE L1 4223 4582 -1592 1986 142 0 0 chr4 60339744 60340054 -141988293 + AluJb SINE Alu 1 310 0 6043 183 25 47 chr4 60340054 60340470 -141987877 + L1M4 LINE L1 4582 5006 -1168 2476 78 0 0 chr4 60340470 60340777 -141987570 + AluY SINE Alu 1 307 -4 6043 183 25 47 chr4 60340777 60341336 -141987011 + L1M4 LINE L1 5006 5512 -662 1551 172 10 35 chr4 60341355 60341669 -141986678 + AluJo SINE Alu 3 308 -4 1304 275 20 9 chr4 60341824 60342169 -141986178 + LTR16A LTR ERVL 17 365 -85 217 257 143 29 chr4 60342201 60342306 -141986041 + MIR SINE MIR 124 240 -22 2172 110 3 10 chr4 60342650 60342960 -141985387 - AluSx SINE Alu -4 308 1 303 254 0 0 chr4 60343154 60343225 -141985122 - MIR SINE MIR -14 248 178 2093 131 24 0 chr4 60343226 60343524 -141984823 + AluJb SINE Alu 5 309 -3 597 181 67 0 chr4 60343524 60343629 -141984718 + FLAM_C SINE Alu 2 113 -30 23 0 0 0 chr4 60343634 60343657 -141984690 + AT_rich Low_complexity Low_complexity 1 23 0 204 294 0 20 chr4 60343660 60343711 -141984636 - MIR SINE MIR -164 98 49 2291 103 13 0 chr4 60343711 60344011 -141984336 + AluSx SINE Alu 1 304 -8 1723 211 42 3 chr4 60344179 60344511 -141983836 + MLT1A1 LTR MaLR 21 365 0 1831 156 0 17 chr4 60344633 60344646 -141983701 + AluJo SINE Alu 6 18 -294 342 0 0 0 chr4 60344646 60344684 -141983663 + (TG)n Simple_repeat Simple_repeat 2 39 0 1831 156 0 17 chr4 60344684 60344965 -141983382 + AluJo SINE Alu 18 295 -17 2217 125 0 3 chr4 60345283 60345596 -141982751 - AluSx SINE Alu 0 312 1 486 282 98 55 chr4 60346408 60346608 -141981739 + MLT1H1 LTR MaLR 1 223 -332 2258 120 0 0 chr4 60346608 60346909 -141981438 + AluSx SINE Alu 1 301 -11 486 282 98 55 chr4 60346909 60347075 -141981272 + MLT1H1 LTR MaLR 223 380 -175 1980 132 26 54 chr4 60347231 60347617 -141980730 - THE1C LTR MaLR 0 375 1 1702 151 60 0 chr4 60348426 60348711 -141979636 + AluSx SINE Alu 1 301 0 893 142 78 0 chr4 60348711 60348852 -141979495 + AluY SINE Alu 132 283 -28 582 15 0 0 chr4 60348852 60348919 -141979428 + (TA)n Simple_repeat Simple_repeat 2 68 0 207 0 0 0 chr4 60348918 60348941 -141979406 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 264 297 0 0 chr4 60348965 60349039 -141979308 - L2 LINE L2 0 3272 3199 2379 104 0 0 chr4 60349853 60350162 -141978185 + AluY SINE Alu 1 309 -2 28 29 0 0 chr4 60350441 60350476 -141977871 + AT_rich Low_complexity Low_complexity 1 35 0 724 185 0 30 chr4 60350813 60350948 -141977399 - FLAM_A SINE Alu -2 131 1 2156 118 7 0 chr4 60350951 60351240 -141977107 - AluSx SINE Alu -21 291 1 2229 104 0 3 chr4 60351469 60351766 -141976581 + AluSq SINE Alu 7 302 -11 350 125 0 0 chr4 60351964 60352012 -141976335 + Alu SINE Alu 1 48 -251 1203 113 0 0 chr4 60352013 60352173 -141976174 + AluSg/x SINE Alu 136 295 -17 1752 176 7 7 chr4 60352355 60352657 -141975690 + AluJo SINE Alu 3 304 -8 781 134 8 8 chr4 60352980 60353099 -141975248 + FLAM_C SINE Alu 1 119 -14 26 0 0 0 chr4 60353112 60353138 -141975209 + AT_rich Low_complexity Low_complexity 1 26 0 661 213 0 8 chr4 60353345 60353467 -141974880 + FLAM_A SINE Alu 1 121 -12 404 265 114 0 chr4 60353571 60353703 -141974644 + L2 LINE L2 3122 3268 -4 2220 90 0 17 chr4 60354256 60354555 -141973792 - AluSg SINE Alu -16 294 1 2633 37 0 0 chr4 60354567 60354863 -141973484 - AluY SINE Alu -13 298 3 1701 186 80 34 chr4 60355721 60356070 -141972277 - MLT1A1 LTR MaLR 0 365 1 2198 139 0 0 chr4 60356151 60356461 -141971886 - AluSx SINE Alu -2 310 1 198 0 0 0 chr4 60356678 60356700 -141971647 + (TAA)n Simple_repeat Simple_repeat 2 23 0 2387 71 3 0 chr4 60356805 60357099 -141971248 + AluY SINE Alu 3 297 -14 352 299 22 100 chr4 60357847 60357887 -141970460 + MLT1J LTR MaLR 2 44 -467 1692 180 45 58 chr4 60357887 60358055 -141970292 + MLT1A2 LTR MaLR 1 170 -204 2160 115 7 0 chr4 60358055 60358350 -141969997 + AluSg SINE Alu 1 297 -13 1692 180 45 58 chr4 60358350 60358559 -141969788 + MLT1A2 LTR MaLR 170 373 -1 352 299 22 100 chr4 60358559 60358789 -141969558 + MLT1J LTR MaLR 44 251 -260 626 91 241 8 chr4 60358980 60358993 -141969354 - L1PA14 LINE L1 -11 6163 6154 204 40 0 0 chr4 60358993 60359018 -141969329 + (CA)n Simple_repeat Simple_repeat 2 26 0 626 91 241 8 chr4 60359018 60359122 -141969225 - L1PA14 LINE L1 -20 6154 6020 * 2912 128 10 0 chr4 60359108 60359666 -141968681 - L1P4 LINE L1 -717 5444 4882 2438 83 3 0 chr4 60359713 60360013 -141968334 + AluSx SINE Alu 1 301 -11 1279 170 3 110 chr4 60360037 60360354 -141967993 + AluJo SINE Alu 22 304 -8 365 216 138 66 chr4 60360980 60361161 -141967186 + MLT1H1 LTR MaLR 65 258 -297 238 191 21 0 chr4 60361173 60361220 -141967127 + MLT1G LTR MaLR 543 590 0 1654 181 3 14 chr4 60361453 60361745 -141966602 - AluJb SINE Alu -23 289 1 812 173 0 0 chr4 60361908 60362041 -141966306 - FLAM_C SINE Alu 0 133 1 2110 132 0 0 chr4 60362284 60362596 -141965751 + AluSc SINE Alu 1 312 0 2092 128 0 3 chr4 60362606 60362903 -141965444 + AluSx SINE Alu 1 296 -16 1177 150 0 0 chr4 60363108 60363288 -141965059 + AluSg/x SINE Alu 127 306 -4 250 234 0 0 chr4 60363288 60363335 -141965012 + MER81 DNA DNA 68 114 0 2113 94 35 3 chr4 60363786 60364073 -141964274 - AluSc SINE Alu -13 296 1 2785 162 22 20 chr4 60364318 60364423 -141963924 - L1PB4 LINE L1 -3 6153 6049 2718 175 90 52 chr4 60364423 60365082 -141963265 - L1MA7 LINE L1 -259 6032 5344 1762 144 4 4 chr4 60365082 60365346 -141963001 + AluSx SINE Alu 40 303 -9 2718 175 90 52 chr4 60365346 60365378 -141962969 - L1MA7 LINE L1 -947 5344 5315 481 198 0 12 chr4 60365378 60365464 -141962883 - FRAM SINE Alu -21 155 71 2189 105 10 0 chr4 60365474 60365778 -141962569 - AluSp SINE Alu -4 309 3 2297 193 10 20 chr4 60365779 60366272 -141962075 - L1MA7 LINE L1 -815 5331 4844 760 190 73 34 chr4 60366278 60366457 -141961890 - MIR SINE MIR -57 205 20 1880 147 10 20 chr4 60366499 60366799 -141961548 + AluSx SINE Alu 1 297 -15 680 172 0 0 chr4 60366806 60366922 -141961425 - FLAM_C SINE Alu -17 116 1 232 274 27 14 chr4 60366968 60367041 -141961306 + L2 LINE L2 3239 3312 -1 2324 114 3 0 chr4 60367046 60367353 -141960994 + AluSp SINE Alu 1 308 -5 1346 151 60 122 chr4 60367661 60367820 -141960527 + AluJo SINE Alu 1 132 -180 2207 122 16 3 chr4 60367820 60368124 -141960223 - 7SLRNA srpRNA srpRNA -12 308 1 1346 151 60 122 chr4 60368124 60368283 -141960064 + AluJo SINE Alu 132 299 -13 1412 128 18 5 chr4 60368295 60368514 -141959833 + MLT1B LTR MaLR 164 385 -5 730 231 87 0 chr4 60368646 60368819 -141959528 + MER5A DNA MER1_type 2 189 0 2181 94 0 21 chr4 60368822 60369146 -141959201 + AluSx SINE Alu 1 318 0 2318 113 0 0 chr4 60370375 60370676 -141957671 + AluY SINE Alu 1 301 -10 367 270 54 93 chr4 60370877 60370960 -141957387 + MER117 DNA MER1_type 2 87 -110 1964 111 49 21 chr4 60370960 60371248 -141957099 - AluSx SINE Alu -16 296 1 2363 110 0 0 chr4 60371248 60371547 -141956800 - AluSq SINE Alu -14 299 1 367 270 54 93 chr4 60371547 60371666 -141956681 + MER117 DNA MER1_type 85 197 0 2236 92 0 0 chr4 60372311 60372592 -141955755 + AluSx SINE Alu 24 304 -8 2353 77 20 0 chr4 60374349 60374646 -141953701 + AluSg SINE Alu 1 303 -7 1449 103 207 8 chr4 60374664 60374906 -141953441 + AluSg1 SINE Alu 1 290 -19 737 177 0 57 chr4 60375508 60375649 -141952698 + AluJo/FLAM SINE Alu 1 133 -169 2175 118 0 0 chr4 60375651 60375964 -141952383 + AluSq SINE Alu 1 313 0 4762 53 14 0 chr4 60375989 60376577 -141951770 - L1PA7 LINE L1 -3 6151 5556 1574 157 25 21 chr4 60376620 60376900 -141951447 + AluJo SINE Alu 1 281 -31 456 19 0 0 chr4 60376903 60376956 -141951391 + (CA)n Simple_repeat Simple_repeat 2 54 0 435 314 0 0 chr4 60377220 60377322 -141951025 - L2 LINE L2 -13 3300 3199 815 146 0 0 chr4 60377549 60377672 -141950675 + FLAM_C SINE Alu 2 124 -19 26 0 0 49 chr4 60377677 60377701 -141950646 + AT_rich Low_complexity Low_complexity 1 24 -15 2063 104 0 7 chr4 60377701 60377990 -141950357 + AluSg SINE Alu 1 287 -23 26 0 0 49 chr4 60377990 60378006 -141950341 + AT_rich Low_complexity Low_complexity 24 39 0 302 346 125 0 chr4 60378267 60378371 -141949976 - L2 LINE L2 -6 3307 3191 1609 80 31 4 chr4 60378452 60378677 -141949670 + AluSg/x SINE Alu 82 312 0 2060 123 0 0 chr4 60378750 60379050 -141949297 + AluSx SINE Alu 1 300 -12 324 374 50 0 chr4 60379133 60379272 -141949075 + L1MC4a LINE L1 5509 5654 -2154 2068 113 7 10 chr4 60379317 60379627 -141948720 + 7SLRNA srpRNA srpRNA 1 309 -11 34 0 0 22 chr4 60379635 60379652 -141948695 + AT_rich Low_complexity Low_complexity 1 17 -27 2077 113 0 3 chr4 60379652 60379952 -141948395 + AluSq SINE Alu 1 299 -14 34 0 0 22 chr4 60379952 60379979 -141948368 + AT_rich Low_complexity Low_complexity 17 44 0 417 281 45 30 chr4 60379989 60380188 -141948159 + L1MC4a LINE L1 5703 5904 -1904 308 173 333 0 chr4 60380217 60380292 -141948055 - MIR SINE MIR -44 218 119 379 188 25 12 chr4 60380367 60380447 -141947900 + MLT1K LTR MaLR 506 586 -2 228 164 164 0 chr4 60380460 60380521 -141947826 + L1MC/D LINE L1 5750 5820 -1988 1974 116 3 25 chr4 60380527 60380846 -141947501 + AluSx SINE Alu 1 312 0 803 142 8 15 chr4 60381049 60381183 -141947164 - FLAM_C SINE Alu 0 133 1 2142 103 0 3 chr4 60381219 60381509 -141946838 - AluSg SINE Alu -15 295 7 237 258 32 86 chr4 60381521 60381614 -141946733 + MIR SINE MIR 79 166 -96 230 289 240 8 chr4 60381592 60381713 -141946634 - MIR SINE MIR 0 262 114 * 954 148 138 20 chr4 60381947 60382143 -141946204 - MER20 DNA MER1_type 0 219 1 3368 117 28 31 chr4 60382453 60382837 -141945510 + MER34 LTR ERV1 1 385 -157 2025 96 4 4 chr4 60382837 60383149 -141945198 - AluSc SINE Alu 0 312 1 3368 117 28 31 chr4 60383149 60383304 -141945043 + MER34 LTR ERV1 385 539 -3 960 125 0 0 chr4 60383903 60384039 -141944308 + AluSq/x SINE Alu 1 136 -176 1740 104 96 29 chr4 60384039 60384319 -141944028 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr4 60384534 60384555 -141943792 + AT_rich Low_complexity Low_complexity 1 21 0 2196 101 13 0 chr4 60384819 60385125 -141943222 + AluSx SINE Alu 1 310 -2 24 0 0 0 chr4 60385380 60385404 -141942943 + AT_rich Low_complexity Low_complexity 1 24 0 230 29 0 0 chr4 60385420 60385454 -141942893 - AluSg SINE Alu -1 298 265 1669 86 9 0 chr4 60385455 60385675 -141942672 - AluSg SINE Alu -87 223 2 2164 91 3 28 chr4 60385755 60386074 -141942273 + AluSp SINE Alu 1 311 -2 2057 104 7 3 chr4 60386522 60386811 -141941536 + AluSq SINE Alu 1 290 -23 1795 140 34 87 chr4 60386885 60387103 -141941244 + MER1B DNA MER1_type 1 229 -2481 2193 101 0 3 chr4 60387103 60387401 -141940946 - AluSq SINE Alu -16 297 1 2198 103 0 0 chr4 60387402 60387704 -141940643 - AluSg SINE Alu -8 302 1 1795 140 34 87 chr4 60387704 60387839 -141940508 + MER1B DNA MER1_type 228 337 0 2444 71 0 0 chr4 60388162 60388470 -141939877 + AluY SINE Alu 1 308 -3 651 129 59 0 chr4 60388470 60388599 -141939748 + AluSp/q SINE Alu 180 314 0 271 233 0 0 chr4 60388604 60388664 -141939683 + L1M4 LINE L1 3958 4017 -2129 3135 190 24 62 chr4 60388686 60388913 -141939434 + L1M4 LINE L1 3996 4230 -1916 1874 143 3 0 chr4 60388913 60389206 -141939141 + AluSx SINE Alu 14 307 -5 3135 190 24 62 chr4 60389206 60389245 -141939102 + L1M4 LINE L1 4230 4269 -1877 324 0 0 0 chr4 60389245 60389281 -141939066 + (CA)n Simple_repeat Simple_repeat 1 36 0 3135 190 24 62 chr4 60389281 60389304 -141939043 + L1M4 LINE L1 4269 4291 -1855 1579 203 3 0 chr4 60389304 60389599 -141938748 + AluJo SINE Alu 1 296 -16 3135 190 24 62 chr4 60389599 60389752 -141938595 + L1M4 LINE L1 4291 4448 -1698 1328 139 127 4 chr4 60389752 60389852 -141938495 + AluSg SINE Alu 1 87 -228 2168 106 0 16 chr4 60389852 60390150 -141938197 + AluSx SINE Alu 1 295 -17 257 100 20 0 chr4 60390150 60390200 -141938147 + (TA)n Simple_repeat Simple_repeat 1 51 0 2168 106 0 16 chr4 60390200 60390212 -141938135 + AluSx SINE Alu 295 306 -6 1328 139 127 4 chr4 60390212 60390395 -141937952 + AluSg SINE Alu 87 315 0 2202 98 3 0 chr4 60390405 60390702 -141937645 + AluSg SINE Alu 1 298 -12 3135 190 24 62 chr4 60390702 60391051 -141937296 + L1M4 LINE L1 4457 4773 -1373 2086 113 3 10 chr4 60391051 60391352 -141936995 + AluSq SINE Alu 1 299 -14 3135 190 24 62 chr4 60391352 60391371 -141936976 + L1M4 LINE L1 4773 4791 -1355 341 411 22 18 chr4 60391434 60391660 -141936687 - L2 LINE L2 -534 2780 2554 593 116 53 0 chr4 60391702 60391797 -141936550 - HY3 scRNA scRNA -1 100 1 1991 117 0 10 chr4 60391859 60392159 -141936188 + AluSx SINE Alu 1 297 -15 328 238 24 24 chr4 60392175 60392259 -141936088 - MER96 DNA MER1_type? -91 84 1 191 329 99 46 chr4 60392315 60392467 -141935880 - L2 LINE L2 -15 3257 3098 * 500 248 243 19 chr4 60392454 60392664 -141935683 + MIR SINE MIR 5 261 -1 191 196 22 22 chr4 60392749 60392795 -141935552 - L2 LINE L2 -222 3050 3005 2884 159 23 37 chr4 60392862 60393088 -141935259 + MER89 LTR ERV1 1 229 -330 2056 129 0 3 chr4 60393088 60393397 -141934950 - AluSg SINE Alu -2 308 1 2884 159 23 37 chr4 60393397 60393737 -141934610 + MER89 LTR ERV1 229 559 0 796 164 16 0 chr4 60394124 60394252 -141934095 - FLAM_C SINE Alu -2 131 2 503 172 11 0 chr4 60394482 60394575 -141933772 - AluJo SINE Alu -85 227 134 220 320 21 10 chr4 60395221 60395318 -141933029 + G-rich Low_complexity Low_complexity 1 98 0 2066 108 0 13 chr4 60395468 60395773 -141932574 - AluY SINE Alu -10 301 1 690 140 9 9 chr4 60395936 60396050 -141932297 - AluJo SINE Alu -173 139 26 2054 92 3 40 chr4 60396405 60396730 -141931617 - AluSp SINE Alu 0 313 1 1602 138 64 21 chr4 60396878 60397179 -141931168 + AluSx SINE Alu 1 312 0 2195 106 0 0 chr4 60397183 60397484 -141930863 + AluSc SINE Alu 1 301 -8 260 241 25 13 chr4 60397533 60397612 -141930735 - L1MD1 LINE L1 -1 6241 6162 * 789 191 42 37 chr4 60397594 60397783 -141930564 - L1MD2 LINE L1 -104 6255 6066 24 0 0 0 chr4 60397817 60397841 -141930506 + AT_rich Low_complexity Low_complexity 1 24 0 481 132 0 0 chr4 60397842 60397910 -141930437 + AluS SINE Alu 1 68 -235 596 170 0 0 chr4 60397910 60398004 -141930343 - AluS SINE Alu -218 95 2 567 172 0 66 chr4 60398007 60398078 -141930269 - L1MD2 LINE L1 -574 5668 5607 2069 122 3 3 chr4 60398078 60398381 -141929966 - AluSx SINE Alu -9 303 1 567 172 0 66 chr4 60398381 60398431 -141929916 - L1MD2 LINE L1 -635 5607 5555 2133 98 0 16 chr4 60398431 60398738 -141929609 - AluSx SINE Alu -10 302 1 1797 141 28 0 chr4 60398740 60399030 -141929317 - AluSg1 SINE Alu -11 298 1 317 316 6 35 chr4 60399255 60399426 -141928921 + G-rich Low_complexity Low_complexity 3 168 0 271 371 9 0 chr4 60399546 60399651 -141928696 - L2 LINE L2 -6 3266 3161 1972 101 33 84 chr4 60399688 60399888 -141928459 - L1MA5 LINE L1 -6 6294 6120 1742 145 0 17 chr4 60399888 60400178 -141928169 - AluJb SINE Alu -27 285 1 1972 101 33 84 chr4 60400178 60400344 -141928003 - L1MA5 LINE L1 -180 6120 5947 966 129 0 0 chr4 60400385 60400532 -141927815 + AluJb SINE Alu 1 147 -165 320 231 31 0 chr4 60400533 60400598 -141927749 + AluS SINE Alu 222 288 -13 2044 126 7 0 chr4 60400601 60400895 -141927452 + AluSx SINE Alu 1 296 -16 796 258 117 7 chr4 60400971 60401262 -141927085 - LTR50 LTR ERVL -2 793 471 1733 138 60 3 chr4 60401287 60401570 -141926777 + AluSx SINE Alu 1 299 -13 757 188 172 31 chr4 60401570 60401831 -141926516 - LTR50 LTR ERVL -495 300 3 23 0 0 0 chr4 60402072 60402095 -141926252 + AT_rich Low_complexity Low_complexity 1 23 0 2052 116 3 0 chr4 60402338 60402630 -141925717 + AluJb SINE Alu 6 298 -14 556 186 155 8 chr4 60402707 60402836 -141925511 - MER58A DNA MER1_type 0 224 77 1866 145 0 29 chr4 60402837 60403033 -141925314 - AluJb SINE Alu -10 302 102 2670 85 8 3 chr4 60403033 60403386 -141924961 + THE1A LTR MaLR 1 355 0 11840 88 4 19 chr4 60403386 60403882 -141924465 + THE1A-int LTR MaLR 1 503 -1077 2056 117 0 22 chr4 60403882 60404199 -141924148 + AluSq SINE Alu 1 310 -3 2323 76 13 0 chr4 60404199 60404499 -141923848 + AluSp SINE Alu 1 305 -8 2030 123 10 3 chr4 60404500 60404809 -141923538 + AluSq SINE Alu 1 311 -2 11840 88 4 19 chr4 60404809 60405913 -141922434 + THE1A-int LTR MaLR 501 1580 0 2431 105 32 0 chr4 60405913 60406257 -141922090 + THE1A LTR MaLR 1 355 0 1866 145 0 29 chr4 60406257 60406369 -141921978 - AluJb SINE Alu -207 105 1 465 190 51 0 chr4 60406369 60406448 -141921899 - MER58A DNA MER1_type -20 87 5 289 154 90 0 chr4 60406950 60407028 -141921319 + L1MC/D LINE L1 4975 5059 -1087 2130 102 7 3 chr4 60407095 60407389 -141920958 + AluSx SINE Alu 1 295 -17 828 154 0 101 chr4 60407413 60407498 -141920849 + FAM SINE Alu 1 4294967227 -254 2288 85 3 0 chr4 60407498 60407793 -141920554 + AluSp SINE Alu 1 296 -17 828 154 0 101 chr4 60407793 60407895 -141920452 + FAM SINE Alu -70 41 -8 650 166 14 29 chr4 60407897 60408036 -141920311 + AluSg/x SINE Alu 173 309 -1 1718 136 51 104 chr4 60408081 60408389 -141919958 + L1MC/D LINE L1 5258 5581 -778 1886 144 0 0 chr4 60408389 60408674 -141919673 + AluSx SINE Alu 17 301 -11 2133 98 0 16 chr4 60408676 60408983 -141919364 + AluSx SINE Alu 1 302 -10 1718 136 51 104 chr4 60408983 60409033 -141919314 + L1MC/D LINE L1 5582 5595 -764 2065 122 3 3 chr4 60409033 60409337 -141919010 + AluSx SINE Alu 1 304 -8 1718 136 51 104 chr4 60409337 60409408 -141918939 + L1MC/D LINE L1 5595 5668 -691 1849 148 0 3 chr4 60409410 60409694 -141918653 + AluSx SINE Alu 1 283 -29 384 289 16 16 chr4 60409702 60409830 -141918517 - MLT1E LTR MaLR -444 149 22 1492 147 32 4 chr4 60409832 60410083 -141918264 - AluSx SINE Alu -54 258 1 1091 227 189 48 chr4 60410083 60410158 -141918189 + MLT1E LTR MaLR 141 204 -389 1426 207 7 7 chr4 60410158 60410453 -141917894 - AluJo SINE Alu -17 295 1 1091 227 189 48 chr4 60410453 60410774 -141917573 + MLT1E LTR MaLR 204 593 0 2231 74 27 0 chr4 60410892 60411191 -141917156 + AluSg SINE Alu 1 307 -3 2142 104 3 0 chr4 60411544 60411843 -141916504 - AluSq SINE Alu -13 300 1 281 284 106 51 chr4 60411864 60412100 -141916247 + L2 LINE L2 2069 2317 -997 436 310 109 48 chr4 60412346 60412804 -141915543 + L2 LINE L2 2359 2844 -470 3271 69 21 26 chr4 60413170 60413635 -141914712 + L1PA10 LINE L1 5706 6168 0 1971 92 14 17 chr4 60414129 60414421 -141913926 - AluSc SINE Alu -18 291 1 660 228 84 89 chr4 60414426 60414609 -141913738 + LTR37B LTR ERV1 52 234 -234 1949 129 0 29 chr4 60414609 60414920 -141913427 + AluSx SINE Alu 1 302 -10 660 228 84 89 chr4 60414920 60415083 -141913264 + LTR37B LTR ERV1 234 396 -72 209 369 108 31 chr4 60415083 60415213 -141913134 - L2 LINE L2 -265 3007 2868 441 240 10 0 chr4 60415246 60415342 -141913005 - MER5A DNA MER1_type -84 105 9 1935 154 0 3 chr4 60415401 60415706 -141912641 + AluSx SINE Alu 1 304 -8 1866 99 99 0 chr4 60416121 60416405 -141911942 + AluSp SINE Alu 1 312 -1 1826 125 0 34 chr4 60416419 60416715 -141911632 + AluSx SINE Alu 1 286 -26 1975 130 0 13 chr4 60416730 60416866 -141911481 + AluSx SINE Alu 1 137 -175 2354 88 0 3 chr4 60416866 60417173 -141911174 + AluSp SINE Alu 1 306 -7 1975 130 0 13 chr4 60417173 60417335 -141911012 + AluSx SINE Alu 137 295 -17 1038 142 57 57 chr4 60417346 60417557 -141910790 + AluJo SINE Alu 1 211 -101 259 146 24 0 chr4 60417562 60417603 -141910744 + FLAM SINE Alu 84 125 -8 2081 116 3 3 chr4 60417612 60417914 -141910433 + AluSx SINE Alu 1 302 -10 485 284 16 47 chr4 60417916 60418106 -141910241 - MIR SINE MIR -21 241 58 807 241 73 41 chr4 60418149 60418235 -141910112 - MIR SINE MIR -4 258 176 1429 163 33 42 chr4 60418235 60418350 -141909997 + AluSx SINE Alu 3 118 -194 2374 54 7 3 chr4 60418350 60418646 -141909701 + AluY SINE Alu 1 297 -14 1429 163 33 42 chr4 60418646 60418837 -141909510 + AluSx SINE Alu 118 306 -6 807 241 73 41 chr4 60418837 60418995 -141909352 - MIR SINE MIR -86 176 6 1100 188 173 22 chr4 60419019 60419290 -141909057 + AluJo SINE Alu 1 312 0 2195 116 0 0 chr4 60419292 60419602 -141908745 + AluSx SINE Alu 3 312 0 445 231 28 19 chr4 60419604 60419712 -141908635 - MER5A DNA MER1_type -77 112 4 625 235 179 84 chr4 60419756 60419837 -141908510 - MER57B LTR ERV1 0 403 331 1303 162 62 69 chr4 60419837 60419989 -141908358 - AluJo SINE Alu -14 288 137 2202 108 3 0 chr4 60419989 60420295 -141908052 - AluSp SINE Alu -1 312 6 1303 162 62 69 chr4 60420295 60420432 -141907915 - AluJo SINE Alu -165 137 1 625 235 179 84 chr4 60420432 60420720 -141907627 - MER57B LTR ERV1 -72 331 3 2064 125 3 0 chr4 60420876 60421187 -141907160 - AluSx SINE Alu 0 312 1 189 107 0 0 chr4 60421279 60421307 -141907040 + (A)n Simple_repeat Simple_repeat 1 28 0 4188 146 17 26 chr4 60421920 60422056 -141906291 + MER50 LTR ERV1 1 137 -597 1951 115 4 0 chr4 60422056 60422335 -141906012 + AluSx SINE Alu 1 280 -32 204 67 0 0 chr4 60422335 60422365 -141905982 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 4188 146 17 26 chr4 60422365 60422945 -141905402 + MER50 LTR ERV1 135 711 -23 857 152 0 14 chr4 60423076 60423221 -141905126 + FLAM_C SINE Alu 1 143 0 2069 126 10 0 chr4 60423225 60423527 -141904820 + AluSq SINE Alu 1 305 -8 912 179 0 0 chr4 60423569 60423720 -141904627 + AluJb SINE Alu 148 298 -14 484 181 0 0 chr4 60424518 60424612 -141903735 + FRAM SINE Alu 74 167 -9 220 283 44 53 chr4 60424778 60424891 -141903456 + L2 LINE L2 3143 3254 -18 2135 72 14 7 chr4 60424891 60425181 -141903166 - AluSc SINE Alu -17 292 1 755 177 0 0 chr4 60425190 60425314 -141903033 - FLAM_C SINE Alu -18 125 2 218 265 0 0 chr4 60425422 60425471 -141902876 - L2 LINE L2 -494 2820 2772 2504 55 0 0 chr4 60425503 60425812 -141902535 - AluY SINE Alu -2 309 1 2071 97 3 33 chr4 60425955 60426255 -141902092 + AluSx SINE Alu 1 291 -21 1507 237 74 25 chr4 60426327 60426803 -141901544 - MLT1F1 LTR MaLR -66 527 11 2136 117 0 19 chr4 60426870 60427187 -141901160 + AluSx SINE Alu 1 311 -1 1766 151 7 3 chr4 60427461 60427753 -141900594 + AluSx SINE Alu 1 293 -19 2209 111 0 0 chr4 60427754 60428061 -141900286 + AluSc SINE Alu 1 307 -2 2176 71 0 3 chr4 60428063 60428373 -141899974 + AluY SINE Alu 1 309 0 1185 188 132 11 chr4 60428547 60428813 -141899534 + AluSx SINE Alu 1 298 -4 4446 90 9 9 chr4 60428876 60429509 -141898838 - L1PB2 LINE L1 0 6151 5519 2280 82 0 22 chr4 60429581 60429900 -141898447 + AluSx SINE Alu 1 312 0 478 255 63 59 chr4 60429978 60430233 -141898114 + MER112 DNA MER1_type 3 258 -2 1542 188 14 3 chr4 60430234 60430526 -141897821 + AluJb SINE Alu 1 295 -17 2087 128 0 0 chr4 60430527 60430825 -141897522 + AluSq SINE Alu 1 298 -15 2281 67 0 7 chr4 60430828 60431126 -141897221 + AluY SINE Alu 1 296 -15 846 235 18 0 chr4 60431151 60431321 -141897026 - MER82 DNA MER2_type -474 179 7 307 73 0 0 chr4 60431485 60431526 -141896821 - AluSg1 SINE Alu -9 299 259 1314 85 0 50 chr4 60431530 60431731 -141896616 - AluSg1 SINE Alu -118 191 1 488 262 104 6 chr4 60431750 60431914 -141896433 + LTR50 LTR ERVL 44 223 -572 2041 110 7 16 chr4 60431974 60432282 -141896065 + AluSx SINE Alu 1 305 -7 1597 131 62 52 chr4 60432283 60432588 -141895759 + AluSp SINE Alu 1 308 -5 864 142 0 0 chr4 60432607 60432727 -141895620 + FLAM_C SINE Alu 1 120 -13 249 57 0 0 chr4 60432727 60432762 -141895585 + (CAGAA)n Simple_repeat Simple_repeat 2 36 0 1523 128 0 9 chr4 60432814 60433041 -141895306 - AluSx SINE Alu -76 236 12 678 104 0 189 chr4 60433055 60433219 -141895128 - L1PB4 LINE L1 -2 6154 6022 1188 136 5 0 chr4 60433361 60433545 -141894802 + AluSp SINE Alu 110 294 -19 444 310 77 31 chr4 60433931 60434117 -141894230 - MIR SINE MIR -3 205 64 2048 120 3 16 chr4 60434362 60434532 -141893815 - AluSx SINE Alu -8 304 138 2133 108 3 0 chr4 60434532 60434829 -141893518 - AluSx SINE Alu -14 298 1 2048 120 3 16 chr4 60434829 60434966 -141893381 - AluSx SINE Alu -174 138 1 327 329 110 0 chr4 60435051 60435197 -141893150 + L2 LINE L2 2965 3126 -187 933 158 8 94 chr4 60435237 60435397 -141892950 - MER2 DNA MER2_type -10 335 163 1543 143 89 0 chr4 60435397 60435677 -141892670 + AluSg1 SINE Alu 1 305 -4 2109 99 0 0 chr4 60435679 60435997 -141892350 + AluSx SINE Alu 1 318 0 933 158 8 94 chr4 60435997 60436066 -141892281 - MER2 DNA MER2_type -183 162 122 1247 215 61 18 chr4 60436066 60436345 -141892002 + AluJo SINE Alu 1 291 -11 893 154 0 7 chr4 60436370 60436506 -141891841 - MER2 DNA MER2_type -210 135 1 694 44 0 22 chr4 60436570 60436661 -141891686 + AluY SINE Alu 209 297 -14 614 178 81 60 chr4 60436716 60436759 -141891588 - MLT1J1 LTR MaLR -256 190 149 186 43 0 0 chr4 60436759 60436782 -141891565 + (TA)n Simple_repeat Simple_repeat 1 23 0 614 178 81 60 chr4 60436782 60436799 -141891548 - MLT1J1 LTR MaLR -297 149 134 1631 144 0 29 chr4 60436799 60437077 -141891270 - AluJo SINE Alu -42 270 1 614 178 81 60 chr4 60437077 60437200 -141891147 - MLT1J1 LTR MaLR -312 134 2 382 318 59 46 chr4 60437778 60438017 -141890330 - MIR SINE MIR -6 256 15 21 0 0 0 chr4 60438622 60438643 -141889704 + AT_rich Low_complexity Low_complexity 1 21 0 2189 94 27 0 chr4 60438765 60439063 -141889284 + AluSx SINE Alu 1 306 -6 289 210 29 87 chr4 60439074 60439212 -141889135 + L1MC4a LINE L1 5835 5964 -1844 1916 146 21 73 chr4 60439221 60439481 -141888866 + MLT1A1 LTR MaLR 1 236 -129 1713 161 0 37 chr4 60439481 60439803 -141888544 + AluJo SINE Alu 1 310 -2 1916 146 21 73 chr4 60439803 60439927 -141888420 + MLT1A1 LTR MaLR 236 365 0 22 56 0 0 chr4 60440069 60440105 -141888242 + AT_rich Low_complexity Low_complexity 1 36 0 917 148 94 194 chr4 60440149 60440479 -141887868 - AluJo SINE Alu -2 300 4 711 120 9 19 chr4 60440480 60440588 -141887759 - AluSq/x SINE Alu -205 107 1 26 0 0 0 chr4 60440659 60440685 -141887662 + AT_rich Low_complexity Low_complexity 1 26 0 1951 145 0 0 chr4 60440731 60441050 -141887297 + AluSx SINE Alu 1 319 0 1543 183 13 17 chr4 60441223 60441524 -141886823 + AluJb SINE Alu 1 300 -12 724 118 0 146 chr4 60441762 60441906 -141886441 - AluJb SINE Alu -188 124 2 1952 122 3 3 chr4 60442367 60442683 -141885664 - AluSq SINE Alu 0 313 1 1846 139 38 0 chr4 60443719 60444007 -141884340 - AluSx SINE Alu -13 299 1 869 180 13 0 chr4 60444144 60444294 -141884053 - AluJb SINE Alu -21 291 140 2269 83 0 13 chr4 60444469 60444771 -141883576 + AluY SINE Alu 7 304 -7 570 212 98 30 chr4 60444802 60444934 -141883413 + L2 LINE L2 3171 3311 -2 1674 152 0 46 chr4 60444969 60445131 -141883216 - AluSx SINE Alu -17 295 152 2131 115 3 0 chr4 60445131 60445427 -141882920 - AluSx SINE Alu -15 297 1 1674 152 0 46 chr4 60445427 60445567 -141882780 - AluSx SINE Alu -160 152 7 1739 137 56 3 chr4 60445624 60445908 -141882439 - AluSx SINE Alu -9 303 5 2412 78 0 0 chr4 60445945 60446251 -141882096 - AluY SINE Alu -5 306 1 2047 106 3 0 chr4 60446276 60446593 -141881754 - AluSx SINE Alu 0 318 1 1577 174 17 20 chr4 60446756 60447054 -141881293 + AluJo SINE Alu 2 298 -14 2055 115 7 7 chr4 60447509 60447805 -141880542 + AluSq SINE Alu 1 296 -17 1807 140 21 0 chr4 60448115 60448401 -141879946 - AluSq SINE Alu -21 292 1 629 233 6 63 chr4 60448532 60448669 -141879678 - MER45A DNA AcHobo -1430 151 23 2456 161 29 2 chr4 60448669 60449084 -141879263 + MSTB LTR MaLR 1 426 0 629 233 6 63 chr4 60449084 60449105 -141879242 - MER45A DNA AcHobo -1558 23 2 1978 133 0 7 chr4 60449221 60449514 -141878833 + AluSx SINE Alu 1 291 -21 2250 50 43 0 chr4 60449856 60450138 -141878209 + AluY SINE Alu 1 294 -17 2162 93 30 0 chr4 60450470 60450772 -141877575 - AluSq SINE Alu -2 311 1 285 271 0 14 chr4 60450998 60451068 -141877279 + MER112 DNA MER1_type 2 70 -190 1111 255 35 55 chr4 60451070 60451294 -141877053 - LTR16A LTR ERVL -4 451 235 582 186 26 26 chr4 60451294 60451407 -141876940 + MER81 DNA DNA 1 113 -1 1111 255 35 55 chr4 60451407 60451638 -141876709 - LTR16A LTR ERVL -220 235 1 2110 96 0 0 chr4 60451664 60451973 -141876374 + AluSc SINE Alu 1 309 0 240 260 13 13 chr4 60451985 60452062 -141876285 + (TA)n Simple_repeat Simple_repeat 2 78 0 2146 98 6 16 chr4 60452123 60452439 -141875908 - AluSq SINE Alu 0 313 1 1937 108 23 7 chr4 60452447 60452754 -141875593 - AluSp SINE Alu 0 313 2 279 237 17 0 chr4 60452925 60452984 -141875363 + L2 LINE L2 2221 2280 -1034 724 172 0 16 chr4 60453010 60453138 -141875209 + AluJb SINE Alu 6 131 -181 198 250 0 0 chr4 60453149 60453193 -141875154 + L2 LINE L2 2316 2359 -955 2341 181 42 101 chr4 60453332 60453432 -141874915 - LTR9 LTR ERV1 0 612 508 2131 117 10 0 chr4 60453432 60453731 -141874616 + AluSx SINE Alu 1 302 -10 2341 181 42 101 chr4 60453731 60454281 -141874066 - LTR9 LTR ERV1 -104 508 1 183 80 0 0 chr4 60454348 60454373 -141873974 + (GA)n Simple_repeat Simple_repeat 1 25 0 1260 213 27 75 chr4 60454373 60454786 -141873561 - LTR37B LTR ERV1 -67 401 9 1079 130 0 0 chr4 60454851 60455012 -141873335 - AluSg/x SINE Alu -3 307 147 902 150 0 0 chr4 60455026 60455159 -141873188 + FLAM_C SINE Alu 1 133 0 265 245 0 47 chr4 60455305 60455411 -141872936 + A-rich Low_complexity Low_complexity 1 101 0 2052 106 0 0 chr4 60455411 60455695 -141872652 + AluSc SINE Alu 17 300 -9 936 133 0 0 chr4 60455696 60455831 -141872516 + AluSq/x SINE Alu 1 135 -177 310 170 0 0 chr4 60455898 60455945 -141872402 + FRAM/FAM SINE Alu 14 60 -115 1671 153 3 17 chr4 60455957 60456245 -141872102 + AluJb SINE Alu 3 286 -26 693 176 135 14 chr4 60456271 60456419 -141871928 + AluSc SINE Alu 135 300 -9 2086 134 19 113 chr4 60456496 60456661 -141871686 - L1MA5 LINE L1 -2 6298 6119 2279 76 3 7 chr4 60456661 60456963 -141871384 - AluSp SINE Alu -12 301 1 2086 134 19 113 chr4 60456963 60457144 -141871203 - L1MA5 LINE L1 -181 6119 5923 1663 173 23 3 chr4 60457144 60457450 -141870897 - AluSx SINE Alu 0 312 1 2086 134 19 113 chr4 60457450 60457492 -141870855 - L1MA5 LINE L1 -377 5923 5957 2087 101 0 0 chr4 60457492 60457770 -141870577 - AluSg SINE Alu -32 278 1 2086 134 19 113 chr4 60457770 60457850 -141870497 - L1MA5 LINE L1 -342 5958 5872 628 266 81 122 chr4 60458263 60458721 -141869626 - L2 LINE L2 -2 3270 2832 2109 115 3 3 chr4 60458780 60459085 -141869262 + AluSg SINE Alu 2 306 -4 2237 95 0 13 chr4 60459089 60459406 -141868941 + AluSq SINE Alu 1 313 0 261 263 139 67 chr4 60459406 60459600 -141868747 - L2 LINE L2 -553 2761 2554 219 354 123 0 chr4 60459608 60459738 -141868609 - MIR3 SINE MIR -14 194 49 308 164 18 0 chr4 60459831 60459886 -141868461 + L1MC5 LINE L1 7852 7907 -54 2182 95 7 0 chr4 60460338 60460643 -141867704 - AluSp SINE Alu -6 307 1 1591 109 5 0 chr4 60460643 60460863 -141867484 - AluSg/x SINE Alu -6 306 85 189 0 0 0 chr4 60460917 60460938 -141867409 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 2264 86 0 3 chr4 60461103 60461407 -141866940 + AluY SINE Alu 1 303 -8 2246 63 17 10 chr4 60461667 60461968 -141866379 + AluY SINE Alu 1 303 -8 1430 110 5 9 chr4 60462079 60462297 -141866050 - AluSq SINE Alu -5 308 92 753 156 16 0 chr4 60462317 60462445 -141865902 - FLAM_C SINE Alu 0 133 4 222 156 0 22 chr4 60462805 60462850 -141865497 + (TA)n Simple_repeat Simple_repeat 2 45 0 480 133 0 82 chr4 60463000 60463098 -141865249 + AluJb SINE Alu 211 300 -12 1264 160 24 69 chr4 60463129 60463256 -141865091 + AluJo SINE Alu 16 147 -165 1903 131 0 14 chr4 60463256 60463562 -141864785 + AluSg SINE Alu 3 304 0 1264 160 24 69 chr4 60463562 60463721 -141864626 + AluJo SINE Alu 147 290 -22 33 25 0 0 chr4 60463732 60463772 -141864575 + AT_rich Low_complexity Low_complexity 1 40 0 367 85 0 0 chr4 60463783 60463830 -141864517 + Alu SINE Alu 247 293 -7 39111 77 12 13 chr4 60463880 60465090 -141863257 + L1PA6 LINE L1 11 1221 -4933 2458 34 0 3 chr4 60465090 60465382 -141862965 + AluY SINE Alu 1 291 -20 39111 77 12 13 chr4 60465382 60469584 -141858763 + L1PA6 LINE L1 1221 5427 -727 1990 129 7 0 chr4 60469584 60469878 -141858469 + AluSc SINE Alu 1 296 -13 39111 77 12 13 chr4 60469878 60469940 -141858407 + L1PA6 LINE L1 5427 5488 -666 2057 93 31 17 chr4 60469940 60470231 -141858116 + AluSc SINE Alu 1 295 -14 39111 77 12 13 chr4 60470231 60470659 -141857688 + L1PA6 LINE L1 5488 5908 -246 2224 95 0 0 chr4 60470660 60470956 -141857391 + AluSg SINE Alu 1 296 -14 2080 111 3 3 chr4 60471182 60471480 -141856867 + AluSq SINE Alu 1 298 -15 1889 141 3 34 chr4 60471480 60471800 -141856547 + AluSx SINE Alu 1 310 -2 1975 137 0 3 chr4 60472302 60472601 -141855746 + AluSq SINE Alu 1 298 -15 1900 141 0 35 chr4 60472601 60472920 -141855427 + AluSx SINE Alu 1 308 -4 682 185 0 0 chr4 60473129 60473248 -141855099 - AluJb SINE Alu -10 302 184 594 241 6 13 chr4 60473265 60473423 -141854924 + AluSq SINE Alu 3 159 -154 745 120 0 0 chr4 60473574 60473682 -141854665 - AluSg SINE Alu -201 109 2 1611 180 7 0 chr4 60473685 60473979 -141854368 - AluSx SINE Alu -16 296 1 244 159 0 0 chr4 60474005 60474049 -141854298 - L1ME1 LINE L1 -5 6161 6118 767 81 228 0 chr4 60474095 60474218 -141854129 - AluSp SINE Alu -162 151 1 341 244 12 12 chr4 60474220 60474306 -141854041 - L1ME1 LINE L1 -48 6118 6033 937 140 0 0 chr4 60474315 60474477 -141853870 + FRAM SINE Alu 11 172 0 1108 218 42 0 chr4 60474478 60474717 -141853630 - L1ME1 LINE L1 -117 6049 5801 1916 130 14 0 chr4 60475175 60475468 -141852879 + AluSx SINE Alu 1 297 -15 2021 105 3 32 chr4 60475543 60475858 -141852489 + AluSp SINE Alu 1 306 -7 1265 111 0 0 chr4 60475858 60476030 -141852317 + AluSg/x SINE Alu 132 303 -7 236 135 0 0 chr4 60476030 60476067 -141852280 + MER34 LTR ERV1 506 542 0 518 202 162 67 chr4 60476072 60476325 -141852022 - L1ME1 LINE L1 -369 5797 5521 1472 177 14 24 chr4 60476329 60476623 -141851724 + AluJb SINE Alu 1 291 -21 477 317 113 20 chr4 60476690 60477129 -141851218 + L1M2 LINE L1 1802 4001 -2847 1381 158 37 44 chr4 60477232 60477338 -141851009 + AluSx SINE Alu 11 116 -196 2365 54 7 3 chr4 60477338 60477633 -141850714 + AluY SINE Alu 1 296 -15 1381 158 37 44 chr4 60477633 60477824 -141850523 + AluSx SINE Alu 116 306 -6 646 263 45 0 chr4 60477826 60477982 -141850365 - MIR SINE MIR -94 168 6 1100 188 173 22 chr4 60478006 60478277 -141850070 + AluJo SINE Alu 1 312 0 2177 117 0 0 chr4 60478279 60478587 -141849760 + AluSx SINE Alu 3 310 -2 445 231 28 19 chr4 60478589 60478697 -141849650 - MER5A DNA MER1_type -77 112 4 625 233 177 81 chr4 60478741 60478822 -141849525 - MER57B LTR ERV1 0 403 331 1335 161 63 56 chr4 60478822 60478974 -141849373 - AluJo SINE Alu -14 288 132 2222 105 3 0 chr4 60478974 60479280 -141849067 - AluSp SINE Alu -1 312 6 1335 161 63 56 chr4 60479280 60479413 -141848934 - AluJo SINE Alu -170 132 1 625 233 177 81 chr4 60479413 60479701 -141848646 - MER57B LTR ERV1 -72 331 3 2072 118 3 0 chr4 60479865 60480169 -141848178 - AluSx SINE Alu -7 305 1 4188 146 17 26 chr4 60480901 60481037 -141847310 + MER50 LTR ERV1 1 137 -597 1951 115 4 0 chr4 60481037 60481316 -141847031 + AluSx SINE Alu 1 280 -32 204 67 0 0 chr4 60481316 60481346 -141847001 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 4188 146 17 26 chr4 60481346 60481926 -141846421 + MER50 LTR ERV1 135 711 -23 857 152 0 14 chr4 60482057 60482202 -141846145 + FLAM_C SINE Alu 1 143 0 2069 126 10 0 chr4 60482207 60482509 -141845838 + AluSq SINE Alu 1 305 -8 461 290 19 19 chr4 60482544 60482706 -141845641 + AluSc SINE Alu 137 298 -11 595 95 0 0 chr4 60482729 60482813 -141845534 + AluSg/x SINE Alu 218 301 -8 1124 88 0 83 chr4 60482813 60482994 -141845353 + AluSg SINE Alu 1 166 -144 1916 130 14 0 chr4 60483105 60483398 -141844949 + AluSx SINE Alu 1 297 -15 2073 88 3 33 chr4 60483473 60483780 -141844567 + AluSp SINE Alu 1 298 -15 1313 107 0 0 chr4 60483782 60483960 -141844387 + AluSg/x SINE Alu 128 305 -7 236 135 0 0 chr4 60483960 60483997 -141844350 + MER34 LTR ERV1 506 542 0 518 202 162 67 chr4 60484002 60484255 -141844092 - L1ME LINE L1 -369 5797 5521 1472 177 14 24 chr4 60484259 60484553 -141843794 + AluJb SINE Alu 1 291 -21 2163 98 0 7 chr4 60484609 60484916 -141843431 - AluY SINE Alu -6 305 1 1359 187 16 0 chr4 60484920 60485166 -141843181 - AluSx SINE Alu -62 250 1 1712 146 10 20 chr4 60485669 60485970 -141842377 - AluJo SINE Alu -14 298 1 409 245 88 68 chr4 60486148 60486340 -141842007 + MIR3 SINE MIR 1 196 -12 2164 95 7 0 chr4 60486483 60486779 -141841568 - AluSp SINE Alu -15 298 1 342 228 304 13 chr4 60487084 60487242 -141841105 - L2 LINE L2 -3 3310 3107 1964 109 4 0 chr4 60487529 60487805 -141840542 + AluSx SINE Alu 1 277 -35 2179 100 0 0 chr4 60487805 60488095 -141840252 + AluSx SINE Alu 3 293 -19 24 0 0 0 chr4 60488095 60488119 -141840228 + AT_rich Low_complexity Low_complexity 1 24 0 2374 73 3 6 chr4 60488119 60488433 -141839914 + AluSp SINE Alu 1 313 0 213 121 0 0 chr4 60489099 60489132 -141839215 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 210 288 0 17 chr4 60489255 60489314 -141839033 + L3 LINE CR1 981 1038 -539 229 236 18 0 chr4 60489322 60489377 -141838970 + L3 LINE CR1 1143 1198 -379 259 274 57 24 chr4 60489643 60489767 -141838580 - L2 LINE L2 -495 2819 2692 207 0 0 0 chr4 60490169 60490192 -141838155 + (T)n Simple_repeat Simple_repeat 1 23 0 29 78 0 0 chr4 60490598 60490662 -141837685 + GC_rich Low_complexity Low_complexity 1 64 0 32 26 0 0 chr4 60491117 60491156 -141837191 + GC_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr4 60491377 60491399 -141836948 + GC_rich Low_complexity Low_complexity 1 22 0 431 230 267 6 chr4 60494373 60494538 -141833809 + MIR SINE MIR 12 219 -43 767 164 0 8 chr4 60494609 60494743 -141833604 + FLAM_C SINE Alu 1 133 0 1877 114 9 54 chr4 60495108 60495289 -141833058 - AluSx SINE Alu -9 303 140 1973 107 14 7 chr4 60495289 60495579 -141832768 - AluSg SINE Alu -18 292 1 1877 114 9 54 chr4 60495579 60495714 -141832633 - AluSx SINE Alu -172 140 1 829 135 0 28 chr4 60495719 60495860 -141832487 - FLAM_C SINE Alu 0 143 7 721 198 70 32 chr4 60495913 60496097 -141832250 - AluJb SINE Alu 0 312 129 1953 98 14 4 chr4 60496415 60496712 -141831635 - AluSg SINE Alu 0 300 1 1512 179 39 0 chr4 60496714 60496994 -141831353 - AluJb SINE Alu -20 292 2 34 24 0 0 chr4 60496997 60497038 -141831309 + AT_rich Low_complexity Low_complexity 1 41 0 1195 122 0 0 chr4 60497450 60497622 -141830725 - AluSq SINE Alu -141 172 1 2094 85 36 10 chr4 60497679 60497984 -141830363 - AluSp SINE Alu 0 313 1 2096 114 0 13 chr4 60498009 60498316 -141830031 - AluSg SINE Alu -7 303 1 237 297 8 59 chr4 60498595 60498713 -141829634 - MIR SINE MIR -76 186 75 973 130 0 0 chr4 60498732 60498878 -141829469 + AluSg/x SINE Alu 146 291 -21 1845 101 87 3 chr4 60499148 60499434 -141828913 + AluSx SINE Alu 1 310 -2 1841 172 27 10 chr4 60499518 60499933 -141828414 - L1MB5 LINE L1 -217 5957 5353 841 176 35 0 chr4 60500082 60500252 -141828095 - AluJb SINE Alu 0 312 137 448 219 168 26 chr4 60500322 60500477 -141827870 - MIR SINE MIR -2 260 84 2258 74 3 3 chr4 60500540 60500837 -141827510 + AluY SINE Alu 2 298 -13 1697 164 7 7 chr4 60500982 60501281 -141827066 + AluJb SINE Alu 6 304 -8 807 178 46 20 chr4 60501320 60501459 -141826888 - AluJo SINE Alu -7 305 158 1528 172 8 4 chr4 60501459 60501726 -141826621 - AluJo SINE Alu -33 279 12 807 178 46 20 chr4 60501726 60501783 -141826564 - AluJo SINE Alu -154 158 104 1269 112 0 16 chr4 60501784 60501971 -141826376 - AluSg SINE Alu -126 184 1 311 156 9 19 chr4 60501971 60502041 -141826306 - AluJo/FLAM SINE Alu -181 121 75 26 0 0 0 chr4 60502724 60502750 -141825597 + AT_rich Low_complexity Low_complexity 1 26 0 1618 109 89 8 chr4 60503258 60503515 -141824832 + AluSp SINE Alu 15 292 -21 2247 110 0 0 chr4 60503619 60503928 -141824419 - AluSg SINE Alu -1 309 1 598 178 72 143 chr4 60504053 60504162 -141824185 + MER33 DNA MER1_type 1 116 -2469 2059 125 0 3 chr4 60504162 60504474 -141823873 - AluSx SINE Alu -1 311 1 598 178 72 143 chr4 60504474 60504713 -141823634 + MER33 DNA MER1_type 116 324 0 2162 104 3 0 chr4 60505040 60505376 -141822971 - AluSq SINE Alu 0 337 1 235 299 10 10 chr4 60505376 60505473 -141822874 - MIR SINE MIR -50 212 116 401 254 37 8 chr4 60505473 60505607 -141822740 - L1MC5 LINE L1 -501 7460 7323 772 223 30 0 chr4 60506033 60506199 -141822148 - AluJo SINE Alu -10 302 132 1268 113 217 17 chr4 60506222 60506462 -141821885 - AluSq SINE Alu -25 288 1 2048 89 10 7 chr4 60506491 60506783 -141821564 - AluSc SINE Alu -16 293 1 755 191 0 0 chr4 60506792 60506918 -141821429 - AluJo SINE Alu -184 128 3 397 245 85 8 chr4 60507040 60507194 -141821153 - L1ME3 LINE L1 -3 6159 5988 1232 213 24 21 chr4 60507233 60507520 -141820827 - AluJo SINE Alu -19 293 6 1985 125 3 0 chr4 60507652 60507947 -141820400 + AluSx SINE Alu 7 302 -10 969 231 4 9 chr4 60508047 60508276 -141820071 - AluJo SINE Alu -84 228 1 352 255 68 119 chr4 60508655 60508838 -141819509 - L1MC5 LINE L1 -742 7219 7028 1976 88 3 51 chr4 60508838 60509134 -141819213 - AluSg SINE Alu -28 282 1 1342 168 131 8 chr4 60509136 60509404 -141818943 - AluSx SINE Alu 0 302 2 352 255 68 119 chr4 60509404 60509452 -141818895 - L1MC5 LINE L1 -934 7027 6997 393 286 137 43 chr4 60509462 60509576 -141818771 - MIR SINE MIR 0 262 160 2302 82 3 0 chr4 60509576 60509881 -141818466 + AluSp SINE Alu 1 306 -7 393 286 137 43 chr4 60509881 60510000 -141818347 - MIR SINE MIR -102 160 7 180 330 211 22 chr4 60509998 60510183 -141818164 - L3 LINE CR1 -851 726 507 * 2081 94 3 3 chr4 60511131 60511419 -141816928 - AluSx SINE Alu -12 300 13 2337 79 0 6 chr4 60511450 60511765 -141816582 - AluSp SINE Alu 0 313 1 353 159 32 0 chr4 60512431 60512494 -141815853 - MSTB2 LTR MaLR 0 457 393 838 112 0 37 chr4 60512499 60512633 -141815714 + FLAM_C SINE Alu 1 129 -14 266 75 25 0 chr4 60512637 60512677 -141815670 - MSTD LTR MaLR -355 41 1 900 144 0 7 chr4 60512857 60513010 -141815337 - AluSg/x SINE Alu 0 312 161 1610 109 9 4 chr4 60513110 60513340 -141815007 - AluSq SINE Alu -82 231 1 849 205 0 41 chr4 60513362 60513516 -141814831 - AluJo SINE Alu -25 287 139 1930 130 7 13 chr4 60513516 60513823 -141814524 - AluSx SINE Alu -7 305 1 849 205 0 41 chr4 60513823 60513839 -141814508 - AluJo SINE Alu -173 139 124 1256 203 65 11 chr4 60513841 60513999 -141814348 - AluJo SINE Alu -21 291 110 1739 126 7 11 chr4 60513999 60514269 -141814078 - AluSx SINE Alu -8 304 36 1256 203 65 11 chr4 60514269 60514386 -141813961 - AluJo SINE Alu -202 110 1 21 0 0 0 chr4 60519942 60519963 -141808384 + AT_rich Low_complexity Low_complexity 1 21 0 2189 106 0 0 chr4 60520880 60521181 -141807166 + AluSg SINE Alu 1 301 -9 1928 123 20 0 chr4 60521408 60521709 -141806638 - AluSg SINE Alu -3 307 1 539 153 153 36 chr4 60521710 60521821 -141806526 - AluJb SINE Alu -187 125 2 1876 137 7 0 chr4 60521828 60522128 -141806219 - AluSx SINE Alu -10 302 1 935 154 6 0 chr4 60522130 60522286 -141806061 - FRAM SINE Alu -15 161 5 1518 184 3 43 chr4 60522480 60522785 -141805562 - AluJo SINE Alu -7 295 3 1619 161 7 13 chr4 60522929 60523234 -141805113 - AluJo SINE Alu -9 303 1 1326 155 12 36 chr4 60523333 60523585 -141804762 + AluSx SINE Alu 49 294 -18 2011 95 32 41 chr4 60523963 60524278 -141804069 - AluSp SINE Alu -1 312 1 3623 95 38 45 chr4 60524590 60524610 -141803737 - MER41A LTR ERV1 0 554 535 1640 94 0 0 chr4 60524610 60524834 -141803513 + AluSg/x SINE Alu 85 308 -4 3623 95 38 45 chr4 60524834 60524943 -141803404 - MER41A LTR ERV1 -19 535 427 2200 69 31 3 chr4 60524943 60525234 -141803113 + AluY SINE Alu 1 299 -12 3623 95 38 45 chr4 60525234 60525661 -141802686 - MER41A LTR ERV1 -127 427 1 5850 71 37 2 chr4 60525661 60526447 -141801900 - MER41A-int LTR ERV1 -2 5944 5132 4866 145 52 17 chr4 60526480 60526786 -141801561 - MER41A-int LTR ERV1 -4825 1121 827 2300 109 7 0 chr4 60526786 60527089 -141801258 - AluSg SINE Alu -4 306 2 4866 145 52 17 chr4 60527089 60527780 -141800567 - MER41A-int LTR ERV1 -5119 827 1 258 195 325 0 chr4 60527789 60527866 -141800481 - MER41A-int LTR ERV1 -5844 102 1 4044 92 16 14 chr4 60527951 60528075 -141800272 - MER41A LTR ERV1 0 554 432 2340 107 0 3 chr4 60528075 60528384 -141799963 + AluSx SINE Alu 5 312 0 4044 92 16 14 chr4 60528384 60528812 -141799535 - MER41A LTR ERV1 -122 432 1 2187 108 17 0 chr4 60529012 60529300 -141799047 + AluSx SINE Alu 1 293 -19 1213 176 13 61 chr4 60529430 60529743 -141798604 - AluY SINE Alu 0 301 4 2210 129 3 0 chr4 60530432 60530742 -141797605 - AluSq SINE Alu 0 313 3 2358 86 0 23 chr4 60530777 60531081 -141797266 - AluSg SINE Alu -13 297 1 1030 234 78 54 chr4 60531195 60531605 -141796742 + MLT1H LTR MaLR 118 537 -12 2403 84 3 10 chr4 60531950 60532259 -141796088 - AluSp SINE Alu -6 307 1 324 0 0 0 chr4 60532869 60532905 -141795442 + (CA)n Simple_repeat Simple_repeat 2 37 0 2166 102 20 7 chr4 60533144 60533439 -141794908 - AluSg1 SINE Alu -10 299 1 340 243 0 0 chr4 60533440 60533514 -141794833 + L1ME1 LINE L1 6042 6115 -51 1599 202 3 7 chr4 60533547 60533839 -141794508 + AluJb SINE Alu 1 291 -21 841 211 85 18 chr4 60533852 60534075 -141794272 + MIR SINE MIR 25 262 0 2121 102 48 3 chr4 60534335 60534630 -141793717 - AluSg SINE Alu -2 308 1 1933 151 6 6 chr4 60535093 60535405 -141792942 + AluJo SINE Alu 1 312 0 1640 183 98 0 chr4 60536452 60536769 -141791578 + MER7A DNA MER2_type 1 346 0 1785 168 0 13 chr4 60536948 60537246 -141791101 - AluJb SINE Alu -5 307 14 2330 77 10 17 chr4 60537448 60537748 -141790599 - AluSp SINE Alu -13 300 3 263 275 49 61 chr4 60537825 60537967 -141790380 + MER20B DNA MER1_type 7 146 -73 2227 98 0 3 chr4 60537967 60538264 -141790083 - AluSc SINE Alu -13 296 1 263 275 49 61 chr4 60538264 60538334 -141790013 + MER20B DNA MER1_type 146 215 -4 1957 162 0 3 chr4 60538635 60538938 -141789409 - AluJo SINE Alu -10 302 1 2165 101 10 3 chr4 60539080 60539368 -141788979 - AluSq SINE Alu -23 290 1 852 136 0 0 chr4 60539396 60539514 -141788833 - FLAM_C SINE Alu -15 118 1 410 218 128 69 chr4 60539641 60539829 -141788518 + MLT1J LTR MaLR 105 303 -208 364 209 4 8 chr4 60539976 60540066 -141788281 + AluJ/monomer SINE Alu 1 56 -244 1536 141 0 0 chr4 60540066 60540286 -141788061 + AluSg/x SINE Alu 89 308 -2 2383 103 3 0 chr4 60540467 60540778 -141787569 + AluSx SINE Alu 1 312 0 586 219 0 0 chr4 60541202 60541325 -141787022 - FLAM_A SINE Alu -1 141 19 2423 80 3 0 chr4 60541498 60541798 -141786549 - AluSp SINE Alu -12 301 1 2256 107 0 10 chr4 60542435 60542734 -141785613 - AluSq SINE Alu -17 296 1 306 0 0 0 chr4 60543125 60543159 -141785188 + (TG)n Simple_repeat Simple_repeat 2 35 0 271 246 0 0 chr4 60543203 60543260 -141785087 + MER3 DNA MER1_type 80 136 -73 1173 169 0 0 chr4 60543260 60543438 -141784909 - FRAM SINE Alu -4 172 1 2256 97 13 26 chr4 60543445 60543756 -141784591 - AluSg SINE Alu -3 307 1 332 130 29 43 chr4 60543767 60543836 -141784511 + MER3 DNA MER1_type 142 209 0 279 125 21 21 chr4 60543794 60543842 -141784505 - MER3 DNA MER1_type -121 88 41 * 1971 169 7 0 chr4 60544531 60544839 -141783508 + AluJb SINE Alu 1 310 -2 2164 134 0 0 chr4 60545351 60545649 -141782698 - AluSx SINE Alu -14 298 1 777 183 0 14 chr4 60546901 60547043 -141781304 - FLAM_C SINE Alu -2 141 2 2178 99 17 3 chr4 60547772 60548064 -141780283 - AluSq SINE Alu -17 296 1 1469 154 16 16 chr4 60548112 60548358 -141779989 - AluJb SINE Alu -44 268 23 1157 214 58 31 chr4 60548585 60548720 -141779627 - AluJb SINE Alu 0 302 172 2349 105 0 0 chr4 60548720 60549026 -141779321 + AluSx SINE Alu 2 307 -5 1157 214 58 31 chr4 60549026 60549184 -141779163 - AluJb SINE Alu -130 172 1 809 150 8 0 chr4 60549196 60549316 -141779031 - FLAM_C SINE Alu -12 121 1 686 218 46 56 chr4 60549316 60549340 -141779007 - MER110 LTR ERV1 -296 195 172 1859 145 11 14 chr4 60549340 60549654 -141778693 - AluSx SINE Alu 0 313 1 686 218 46 56 chr4 60549654 60549825 -141778522 - MER110 LTR ERV1 -319 172 1 669 196 7 7 chr4 60551408 60551546 -141776801 - AluSg/x SINE Alu -9 301 164 240 257 11 50 chr4 60551591 60551770 -141776577 + (CACCC)n Simple_repeat Simple_repeat 1 172 0 1587 156 7 25 chr4 60552730 60553005 -141775342 - AluSx SINE Alu -42 270 1 2151 133 0 10 chr4 60553277 60553586 -141774761 + AluSx SINE Alu 3 308 -4 2407 74 7 3 chr4 60554132 60554431 -141773916 - AluY SINE Alu -11 300 1 228 302 133 59 chr4 60554651 60554989 -141773358 + L3 LINE CR1 1214 1576 -1 807 178 0 15 chr4 60555210 60555345 -141773002 + LTR8 LTR ERV1 548 680 -11 1018 111 0 0 chr4 60556614 60556749 -141771598 + AluSq/x SINE Alu 1 135 -178 1889 105 77 14 chr4 60556749 60556861 -141771486 + AluSg SINE Alu 1 104 -206 2200 89 36 17 chr4 60556861 60557163 -141771184 + AluSg SINE Alu 1 308 -2 1889 105 77 14 chr4 60557163 60557335 -141771012 + AluSg SINE Alu 104 303 -7 242 211 137 32 chr4 60557410 60557505 -141770842 + L2 LINE L2 3200 3304 -9 298 253 0 0 chr4 60558507 60558586 -141769761 + (CTG)n Simple_repeat Simple_repeat 2 80 0 2496 52 7 3 chr4 60559167 60559476 -141768871 + AluY SINE Alu 1 310 -1 2546 64 3 0 chr4 60559485 60559796 -141768551 + AluSx SINE Alu 1 312 0 1759 131 84 0 chr4 60560898 60561173 -141767174 + AluSg SINE Alu 1 298 -12 899 143 0 0 chr4 60561351 60561484 -141766863 - FLAM_C SINE Alu 0 133 1 1509 144 113 0 chr4 60561703 60561959 -141766388 + AluJb SINE Alu 6 290 -22 2021 130 20 0 chr4 60562068 60562361 -141765986 - AluSx SINE Alu -13 299 1 856 258 103 50 chr4 60562402 60562798 -141765549 - L1MC4a LINE L1 -1867 5941 5525 1049 310 121 29 chr4 60562926 60563537 -141764810 + L2 LINE L2 1683 2487 -827 1601 156 73 21 chr4 60563537 60563608 -141764739 - MER2 DNA MER2_type 0 344 278 1475 143 12 32 chr4 60563608 60563860 -141764487 + AluJo SINE Alu 63 309 -3 1601 156 73 21 chr4 60563860 60564115 -141764232 - MER2 DNA MER2_type -66 278 1 1049 310 121 29 chr4 60564115 60564397 -141763950 + L2 LINE L2 2487 2742 -572 2183 113 3 0 chr4 60564627 60564927 -141763420 - AluSg SINE Alu -9 301 1 727 133 17 8 chr4 60564943 60565063 -141763284 - FLAM_C SINE Alu -12 121 1 2171 116 7 0 chr4 60565128 60565422 -141762925 - AluSx SINE Alu -16 296 1 21 0 0 0 chr4 60565959 60565980 -141762367 + AT_rich Low_complexity Low_complexity 1 21 0 869 253 111 32 chr4 60566148 60566464 -141761883 - MLT1G1 LTR MaLR -13 577 237 575 68 11 34 chr4 60566484 60566572 -141761775 - AluY SINE Alu -8 303 218 22 35 0 0 chr4 60566674 60566703 -141761644 + GC_rich Low_complexity Low_complexity 1 29 0 1578 116 0 5 chr4 60566732 60566948 -141761399 - AluSx SINE Alu -87 225 11 874 269 26 23 chr4 60566959 60567223 -141761124 - MLT1G1 LTR MaLR -330 265 1 21 0 0 0 chr4 60567787 60567808 -141760539 + AT_rich Low_complexity Low_complexity 1 21 0 422 217 112 0 chr4 60567809 60567961 -141760386 - L1MC4 LINE L1 -5 8037 7869 616 200 0 0 chr4 60567961 60568066 -141760281 + AluJb SINE Alu 194 298 -14 1714 167 87 22 chr4 60568116 60568482 -141759865 - L1MC4 LINE L1 -293 7749 7360 1983 128 0 4 chr4 60568866 60569140 -141759207 + AluSx SINE Alu 21 293 -19 754 175 0 29 chr4 60569190 60569327 -141759020 + FLAM_A SINE Alu 1 133 0 711 133 0 113 chr4 60569630 60569780 -141758567 + FLAM_C SINE Alu 6 138 -5 1412 174 67 0 chr4 60571478 60571731 -141756616 - AluJo SINE Alu -15 297 28 1017 130 0 7 chr4 60573037 60573183 -141755164 - AluY SINE Alu -145 166 22 2045 114 7 4 chr4 60573364 60573678 -141754669 + AluSx SINE Alu 1 315 0 343 160 149 64 chr4 60574417 60574511 -141753836 + U13 snRNA snRNA 1 102 -2 1461 248 145 34 chr4 60575868 60576393 -141751954 - MLT1E LTR MaLR -1 592 10 450 53 0 0 chr4 60576548 60576605 -141751742 + (TG)n Simple_repeat Simple_repeat 2 58 0 2500 43 10 13 chr4 60576620 60576923 -141751424 - AluY SINE Alu -9 302 1 628 158 25 24 chr4 60576928 60577060 -141751287 - L1MA5 LINE L1 -7 6296 6164 1342 169 35 52 chr4 60577143 60577433 -141750914 + AluJb SINE Alu 1 285 -27 1813 153 38 0 chr4 60577874 60578162 -141750185 - AluJb SINE Alu -13 299 1 275 299 57 57 chr4 60578374 60578531 -141749816 - MER5A DNA MER1_type -1 188 32 245 312 0 0 chr4 60578475 60578552 -141749795 + MER5B DNA MER1_type 102 178 0 * 748 123 123 39 chr4 60578821 60578976 -141749371 - AluSc SINE Alu -4 305 138 364 219 213 6 chr4 60579091 60579251 -141749096 - L1MC4 LINE L1 -103 7939 7747 1483 136 25 25 chr4 60579279 60579521 -141748826 - AluSx SINE Alu -69 243 2 820 115 85 0 chr4 60579554 60579684 -141748663 - MER46A DNA MER2_type 0 236 96 876 251 235 0 chr4 60579766 60580132 -141748215 - L1MC4a LINE L1 -252 7556 7105 325 191 35 106 chr4 60580140 60580281 -141748066 - L1MC4 LINE L1 -904 7138 7008 2193 102 17 3 chr4 60580929 60581222 -141747125 + AluSx SINE Alu 1 297 -15 2179 94 3 3 chr4 60581376 60581664 -141746683 - AluSx SINE Alu -12 300 13 2416 90 3 0 chr4 60581695 60582007 -141746340 - AluSp SINE Alu 0 313 1 960 167 0 77 chr4 60582007 60582188 -141746159 - L1MA5 LINE L1 -165 6135 5970 1738 176 23 3 chr4 60582188 60582494 -141745853 - AluSx SINE Alu 0 312 1 960 167 0 77 chr4 60582494 60582522 -141745825 - L1MA5 LINE L1 -330 5970 5941 2103 96 3 11 chr4 60582536 60582818 -141745529 - AluSx SINE Alu -32 280 1 925 162 0 19 chr4 60582823 60582977 -141745370 - AluJo SINE Alu -161 151 1 207 244 89 73 chr4 60583053 60583176 -141745171 - L2 LINE L2 -994 2320 2196 215 326 0 0 chr4 60583476 60583571 -141744776 + T-rich Low_complexity Low_complexity 1 95 0 1399 183 17 64 chr4 60584428 60584473 -141743874 - L1MC4 LINE L1 0 8042 7996 1709 170 24 3 chr4 60584473 60584761 -141743586 + AluJb SINE Alu 1 294 -18 1399 183 17 64 chr4 60584761 60585018 -141743329 - L1MC4 LINE L1 -46 7996 7757 1969 101 0 33 chr4 60585018 60585294 -141743053 - AluSx SINE Alu -22 290 24 1399 183 17 64 chr4 60585294 60585351 -141742996 - L1MC4 LINE L1 -285 7757 7699 1324 225 51 30 chr4 60585410 60585500 -141742847 - L1MC4 LINE L1 -205 7673 7586 1712 125 54 14 chr4 60585500 60585780 -141742567 - AluSx SINE Alu -21 291 1 1324 225 51 30 chr4 60585780 60586144 -141742203 - L1MC4 LINE L1 -292 7586 7114 1824 160 0 7 chr4 60586361 60586648 -141741699 - AluJb SINE Alu -27 285 1 544 168 59 0 chr4 60587010 60587111 -141741236 + U6 snRNA snRNA 1 107 0 290 254 246 0 chr4 60587316 60587454 -141740893 - MIR3 SINE MIR -14 194 23 2335 76 7 3 chr4 60587468 60587759 -141740588 + AluSc SINE Alu 1 292 -17 850 159 68 37 chr4 60587772 60587893 -141740454 + AluJo SINE Alu 6 135 -177 1761 164 33 20 chr4 60587893 60588197 -141740150 + AluSx SINE Alu 5 312 0 850 159 68 37 chr4 60588197 60588238 -141740109 + AluJo SINE Alu 135 173 -139 428 88 0 0 chr4 60588237 60588294 -141740053 + Alu SINE Alu 241 297 -15 * 2120 108 0 74 chr4 60588339 60588664 -141739683 - AluSg SINE Alu -8 302 2 601 240 8 0 chr4 60588711 60588840 -141739507 - AluJo SINE Alu -177 135 6 1760 178 3 3 chr4 60589006 60589299 -141739048 - AluSx SINE Alu -19 293 1 231 114 0 0 chr4 60589876 60589911 -141738436 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 367 146 234 102 chr4 60590572 60590625 -141737722 - MER106B DNA MER1_type -1 1058 1013 2156 124 0 0 chr4 60590625 60590916 -141737431 - AluSp SINE Alu -18 295 5 367 146 234 102 chr4 60590916 60590999 -141737348 - MER106B DNA MER1_type -46 1013 904 2368 82 0 20 chr4 60591443 60591749 -141736598 + AluSq SINE Alu 2 301 -12 1853 118 11 11 chr4 60592142 60592421 -141735926 - AluSx SINE Alu -32 280 2 215 243 57 26 chr4 60592823 60592901 -141735446 - MIR SINE MIR -65 143 91 2123 112 0 16 chr4 60592997 60593311 -141735036 + AluSg SINE Alu 1 309 -1 2223 85 14 0 chr4 60594405 60594698 -141733649 - AluY SINE Alu -14 297 1 390 329 92 95 chr4 60594701 60594984 -141733363 - L2 LINE L2 -9 3263 2982 305 331 125 24 chr4 60595124 60595372 -141732975 - L2 LINE L2 -547 2767 2495 23 0 0 0 chr4 60595993 60596016 -141732331 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 60596045 60596073 -141732274 + AT_rich Low_complexity Low_complexity 1 28 0 298 252 135 9 chr4 60596094 60596205 -141732142 + MER117 DNA MER1_type 45 169 -28 502 221 7 76 chr4 60596206 60596351 -141731996 - L2 LINE L2 -8 3305 3171 2117 119 7 0 chr4 60597450 60597745 -141730602 + AluSx SINE Alu 1 297 -15 2457 70 0 0 chr4 60597747 60598034 -141730313 + AluSc SINE Alu 3 289 -20 26 0 0 0 chr4 60598084 60598110 -141730237 + AT_rich Low_complexity Low_complexity 1 26 0 2207 121 0 19 chr4 60598325 60598632 -141729715 + AluSx SINE Alu 1 301 -11 1793 155 0 14 chr4 60598886 60599033 -141729314 - AluSx SINE Alu -32 280 137 2284 113 0 0 chr4 60599033 60599342 -141729005 - AluSx SINE Alu -3 309 1 1793 155 0 14 chr4 60599342 60599478 -141728869 - AluSx SINE Alu -175 137 1 548 100 36 118 chr4 60599603 60599713 -141728634 - FLAM_C SINE Alu -14 129 29 1006 176 6 6 chr4 60599735 60599900 -141728447 - FRAM SINE Alu 0 166 2 236 277 77 0 chr4 60599929 60599994 -141728353 - MER58 DNA MER1_type -2160 260 191 682 200 0 50 chr4 60600024 60600164 -141728183 + FLAM_C SINE Alu 1 133 0 2092 123 7 3 chr4 60600392 60600692 -141727655 - AluSx SINE Alu -11 301 1 2428 78 3 7 chr4 60600692 60601000 -141727347 - AluY SINE Alu -4 307 1 873 188 53 40 chr4 60601000 60601236 -141727111 - MER33 DNA MER1_type -250 74 1 231 128 0 0 chr4 60601891 60601930 -141726417 - L1ME1 LINE L1 -8 6158 6120 23 0 0 0 chr4 60601930 60601953 -141726394 + AT_rich Low_complexity Low_complexity 1 23 0 2051 116 13 10 chr4 60601953 60602256 -141726091 - AluSx SINE Alu -7 305 2 656 153 35 11 chr4 60602256 60602388 -141725959 - L1MB7 LINE L1 -33 6141 6009 1641 128 102 4 chr4 60602465 60602730 -141725617 + AluJo SINE Alu 3 293 -19 210 216 31 31 chr4 60602735 60602832 -141725515 + (TATAA)n Simple_repeat Simple_repeat 1 97 0 203 103 26 0 chr4 60603099 60603138 -141725209 + (TA)n Simple_repeat Simple_repeat 1 40 0 21 36 0 0 chr4 60603138 60603166 -141725181 + AT_rich Low_complexity Low_complexity 1 28 0 279 275 58 33 chr4 60603953 60604073 -141724274 - L2 LINE L2 -24 3289 3167 405 338 141 44 chr4 60604372 60605034 -141723313 - L2 LINE L2 -535 2779 2054 911 159 8 0 chr4 60605571 60605703 -141722644 - FLAM_C SINE Alu 0 133 1 1844 161 58 95 chr4 60605728 60606224 -141722123 - L1MC4 LINE L1 -91 7951 7474 2254 108 0 0 chr4 60606233 60606529 -141721818 - AluSc SINE Alu -13 296 1 192 267 172 78 chr4 60606680 60606796 -141721551 + MIR SINE MIR 60 186 -76 212 269 0 45 chr4 60607594 60607661 -141720686 + L3 LINE CR1 1275 1338 -239 2007 117 9 44 chr4 60607683 60607999 -141720348 - AluSx SINE Alu -7 305 1 408 303 25 0 chr4 60608009 60608131 -141720216 + L3 LINE CR1 1439 1563 -14 22 0 0 0 chr4 60609167 60609189 -141719158 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 60609991 60610019 -141718328 + AT_rich Low_complexity Low_complexity 1 28 0 29 70 0 0 chr4 60610953 60611010 -141717337 + AT_rich Low_complexity Low_complexity 1 57 0 736 204 150 38 chr4 60611277 60611517 -141716830 - L1ME3A LINE L1 -4 6166 5900 380 287 9 17 chr4 60611780 60611895 -141716452 - L1MC5 LINE L1 -42 7919 7806 703 158 53 0 chr4 60611929 60612043 -141716304 - AluJo SINE Alu -25 287 168 869 145 35 87 chr4 60612106 60612158 -141716189 - AluJo SINE Alu -148 164 111 2191 123 0 3 chr4 60612158 60612459 -141715888 + AluSx SINE Alu 1 300 -12 869 145 35 87 chr4 60612459 60612578 -141715769 - AluJo SINE Alu -201 111 2 423 145 13 0 chr4 60612578 60612654 -141715693 - L1MC5 LINE L1 -174 7787 7711 680 131 73 7 chr4 60612680 60612817 -141715530 - Charlie1a DNA MER1_type -56 1399 1254 1075 90 28 0 chr4 60612817 60612962 -141715385 + AluSg/x SINE Alu 132 280 -30 198 0 0 0 chr4 60612965 60612987 -141715360 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 4357 174 79 89 chr4 60612994 60613219 -141715128 - Charlie1a DNA MER1_type -1507 1254 1028 2090 117 7 0 chr4 60613219 60613510 -141714837 - AluSx SINE Alu -19 293 1 4357 174 79 89 chr4 60613510 60613521 -141714826 - Charlie1a DNA MER1_type -1733 1028 1018 1768 138 17 24 chr4 60613521 60613812 -141714535 - AluJb SINE Alu -23 289 1 4357 174 79 89 chr4 60613812 60614504 -141713843 - Charlie1a DNA MER1_type -1743 1018 339 825 171 0 0 chr4 60614504 60614633 -141713714 - FLAM_C SINE Alu -2 131 3 4357 174 79 89 chr4 60614633 60614969 -141713378 - Charlie1a DNA MER1_type -2422 339 1 660 206 70 49 chr4 60614978 60615265 -141713082 - L1MC5 LINE L1 -285 7676 7384 204 0 83 0 chr4 60615267 60615303 -141713044 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 1081 205 87 49 chr4 60615306 60615676 -141712671 - L1MC5 LINE L1 -621 7340 6957 627 146 92 69 chr4 60616079 60616209 -141712138 - FLAM_C SINE Alu 0 133 1 212 305 34 0 chr4 60617874 60617933 -141710414 - MIR SINE MIR -129 79 19 1668 113 4 0 chr4 60620043 60620273 -141708074 + AluSg/x SINE Alu 71 301 -9 206 207 17 17 chr4 60620736 60620794 -141707553 + (TA)n Simple_repeat Simple_repeat 1 58 0 288 221 91 13 chr4 60620867 60620944 -141707403 + LTR50 LTR ERVL 16 98 -697 2247 102 0 20 chr4 60621662 60621965 -141706382 - AluSx SINE Alu -15 297 1 695 269 91 27 chr4 60621990 60622328 -141706019 + L1ME LINE L1 5458 5819 -302 362 282 39 50 chr4 60623236 60623417 -141704930 + MER112 DNA MER1_type 82 260 0 1074 123 6 6 chr4 60623579 60623742 -141704605 - FRAM SINE Alu -9 167 5 256 292 180 59 chr4 60624373 60624729 -141703618 + MLT1K LTR MaLR 184 582 -6 2362 90 0 0 chr4 60625486 60625775 -141702572 + AluSc SINE Alu 1 289 -20 26 0 0 0 chr4 60625825 60625851 -141702496 + AT_rich Low_complexity Low_complexity 1 26 0 2193 123 0 19 chr4 60626066 60626374 -141701973 + AluSx SINE Alu 1 302 -10 1781 158 0 14 chr4 60626628 60626775 -141701572 - AluSx SINE Alu -32 280 137 2300 110 0 0 chr4 60626775 60627084 -141701263 - AluSx SINE Alu -3 309 1 1781 158 0 14 chr4 60627084 60627220 -141701127 - AluSx SINE Alu -175 137 1 512 123 35 105 chr4 60627344 60627458 -141700889 - AluJb SINE Alu -178 134 29 964 171 12 6 chr4 60627480 60627644 -141700703 - AluJb SINE Alu -10 302 138 682 200 0 50 chr4 60627768 60627908 -141700439 + FLAM_C SINE Alu 1 133 0 2155 123 3 3 chr4 60628136 60628437 -141699910 - AluSx SINE Alu -11 301 1 2450 78 3 7 chr4 60628437 60628745 -141699602 - AluY SINE Alu -4 307 1 873 188 53 40 chr4 60628745 60628981 -141699366 - MER33 DNA MER1_type -250 74 1 226 128 0 0 chr4 60629636 60629675 -141698672 - L1ME1 LINE L1 -8 6158 6120 23 0 0 0 chr4 60629675 60629698 -141698649 + AT_rich Low_complexity Low_complexity 1 23 0 2095 119 13 3 chr4 60629698 60630000 -141698347 - AluSx SINE Alu -6 306 2 650 153 35 11 chr4 60630000 60630132 -141698215 - L1MB7 LINE L1 -33 6141 6009 1653 128 102 4 chr4 60630209 60630474 -141697873 + AluJo SINE Alu 3 293 -19 210 216 31 31 chr4 60630479 60630576 -141697771 + (TATAA)n Simple_repeat Simple_repeat 1 97 0 25 21 0 43 chr4 60630825 60630843 -141697504 + AT_rich Low_complexity Low_complexity 1 18 -27 224 77 26 0 chr4 60630843 60630882 -141697465 + (TA)n Simple_repeat Simple_repeat 1 40 0 25 21 0 43 chr4 60630882 60630910 -141697437 + AT_rich Low_complexity Low_complexity 18 45 0 242 275 58 33 chr4 60631697 60631817 -141696530 - L2 LINE L2 -24 3289 3167 238 344 139 42 chr4 60632116 60632778 -141695569 - L2 LINE L2 -535 2779 2054 861 159 8 0 chr4 60633315 60633447 -141694900 - FLAM_C SINE Alu 0 133 1 1841 161 58 97 chr4 60633472 60633969 -141694378 - L1MC4 LINE L1 -91 7951 7474 2309 101 0 0 chr4 60633978 60634274 -141694073 - AluSc SINE Alu -13 296 1 1995 115 10 45 chr4 60635428 60635742 -141692605 - AluSx SINE Alu -9 303 1 372 303 25 0 chr4 60635752 60635874 -141692473 + L3 LINE CR1 1439 1563 -14 22 0 0 0 chr4 60636910 60636932 -141691415 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 60637734 60637762 -141690585 + AT_rich Low_complexity Low_complexity 1 28 0 29 70 0 0 chr4 60638692 60638749 -141689598 + AT_rich Low_complexity Low_complexity 1 57 0 682 217 150 38 chr4 60639015 60639255 -141689092 - L1ME3A LINE L1 -4 6166 5900 376 287 9 17 chr4 60639518 60639633 -141688714 - L1MC5 LINE L1 -42 7919 7806 662 158 53 0 chr4 60639667 60639781 -141688566 - FRAM SINE Alu -25 151 32 23 0 0 0 chr4 60639868 60639891 -141688456 + AT_rich Low_complexity Low_complexity 1 23 0 2350 100 0 3 chr4 60639896 60640196 -141688151 + AluSx SINE Alu 1 299 -13 1991 107 25 44 chr4 60640222 60640541 -141687806 - AluSp SINE Alu 0 313 1 260 267 105 0 chr4 60640625 60640711 -141687636 + LTR33A LTR ERVL 42 136 -387 311 244 25 50 chr4 60640840 60640874 -141687473 + LTR33A LTR ERVL 406 439 -84 2459 121 3 24 chr4 60640874 60641246 -141687101 - THE1B LTR MaLR 0 364 1 311 244 25 50 chr4 60641246 60641330 -141687017 + LTR33A LTR ERVL 439 521 -2 21 82 0 0 chr4 60641445 60641494 -141686853 + AT_rich Low_complexity Low_complexity 1 49 0 1794 156 0 30 chr4 60641567 60641862 -141686485 - AluJb SINE Alu -22 290 5 23 0 0 0 chr4 60642273 60642296 -141686051 + AT_rich Low_complexity Low_complexity 1 23 0 2368 90 10 0 chr4 60642349 60642659 -141685688 + AluSp SINE Alu 1 313 0 187 352 114 0 chr4 60642808 60642896 -141685451 - MIR SINE MIR 0 262 165 1198 153 9 52 chr4 60642935 60643164 -141685183 + MER20 DNA MER1_type 1 219 0 1533 166 92 21 chr4 60643207 60643490 -141684857 - AluJo SINE Alu -9 303 1 212 211 14 0 chr4 60644059 60644130 -141684217 + (CA)n Simple_repeat Simple_repeat 2 73 0 1960 145 3 13 chr4 60645099 60645402 -141682945 - AluJo SINE Alu -12 300 1 1048 154 151 111 chr4 60645810 60645919 -141682428 + MER58B DNA MER1_type 4 107 -2313 1837 151 27 20 chr4 60645919 60646211 -141682136 - AluSx SINE Alu -18 294 1 1048 154 151 111 chr4 60646211 60646426 -141681921 + MER58B DNA MER1_type 107 341 0 1669 211 20 27 chr4 60647895 60648303 -141680044 - L1M4 LINE L1 -968 5178 4774 826 191 0 0 chr4 60648432 60648573 -141679774 - FLAM_C SINE Alu -2 141 1 296 215 21 21 chr4 60648971 60649064 -141679283 + AluSp/q SINE Alu 209 301 -2 857 141 58 0 chr4 60649073 60649229 -141679118 + L1MA5 LINE L1 6134 6298 -2 687 176 135 14 chr4 60649306 60649454 -141678893 - AluSc SINE Alu -9 300 135 1788 153 3 17 chr4 60649480 60649768 -141678579 - AluJb SINE Alu -26 286 3 308 170 0 0 chr4 60649780 60649827 -141678520 - FRAM/FAM SINE Alu -115 60 14 1048 111 0 0 chr4 60649894 60650029 -141678318 - AluSq/x SINE Alu -178 135 1 263 265 0 29 chr4 60651060 60651083 -141677264 + GA-rich Low_complexity Low_complexity 4 26 -43 2574 104 14 14 chr4 60651083 60651447 -141676900 + THE1B LTR MaLR 1 364 0 263 265 0 29 chr4 60651447 60651491 -141676856 + GA-rich Low_complexity Low_complexity 26 69 0 329 214 0 0 chr4 60651557 60651627 -141676720 + L1PB4 LINE L1 6086 6155 -1 1876 164 7 0 chr4 60651744 60652037 -141676310 - AluJo SINE Alu -17 295 1 2292 79 7 0 chr4 60652062 60652352 -141675995 - AluY SINE Alu -19 292 1 243 304 25 0 chr4 60652820 60652899 -141675448 + MIR SINE MIR 34 114 -148 2256 111 3 9 chr4 60654233 60654548 -141673799 - AluSq SINE Alu 0 313 1 1699 141 3 56 chr4 60654557 60654861 -141673486 - AluJo SINE Alu -24 288 1 483 308 109 14 chr4 60655659 60655870 -141672477 + MIR SINE MIR 29 259 -3 2195 142 0 0 chr4 60657010 60657320 -141671027 - AluSx SINE Alu -2 310 1 600 213 0 64 chr4 60658012 60658153 -141670194 - FLAM_A SINE Alu -1 132 1 2158 117 0 25 chr4 60658355 60658671 -141669676 + AluSc SINE Alu 1 308 -1 398 250 57 29 chr4 60659220 60659360 -141668987 - MER5B DNA MER1_type 0 178 35 1861 164 0 13 chr4 60661005 60661304 -141667043 - AluJb SINE Alu -13 299 5 6827 76 6 4 chr4 60662320 60663765 -141664582 + L1PA14 LINE L1 4712 6161 0 993 162 33 29 chr4 60664196 60664406 -141663941 - PABL_B LTR ERV1 -1 666 456 1639 134 8 42 chr4 60664645 60664907 -141663440 + AluJb SINE Alu 21 273 -39 1045 113 20 7 chr4 60664918 60665069 -141663278 + FAM SINE Alu 21 173 -12 2869 164 7 67 chr4 60665187 60665771 -141662576 - MER44D DNA MER2_type 0 605 2 824 113 7 70 chr4 60665818 60665960 -141662387 - FLAM_C SINE Alu 0 133 1 338 339 61 11 chr4 60665972 60666153 -141662194 - MIR SINE MIR -56 206 18 350 358 15 54 chr4 60666966 60667226 -141661121 + L2 LINE L2 2810 3059 -213 21 0 0 0 chr4 60667963 60667984 -141660363 + AT_rich Low_complexity Low_complexity 1 21 0 1297 163 7 93 chr4 60668055 60668344 -141660003 + AluJb SINE Alu 1 264 -48 226 268 158 16 chr4 60668693 60668820 -141659527 - MIR3 SINE MIR -16 192 48 1487 209 209 30 chr4 60670114 60670549 -141657798 + MLT1F1 LTR MaLR 53 565 -2 2206 119 3 0 chr4 60670567 60670860 -141657487 - AluSx SINE Alu -18 294 1 1740 158 81 3 chr4 60671379 60671689 -141656658 + L1MB1 LINE L1 5829 6162 -6 22 0 0 0 chr4 60671828 60671850 -141656497 + AT_rich Low_complexity Low_complexity 1 22 0 1379 159 163 0 chr4 60672041 60672298 -141656049 + AluSx SINE Alu 1 299 -13 842 143 6 68 chr4 60673298 60673459 -141654888 + AluJo SINE Alu 1 151 -161 971 161 6 0 chr4 60673516 60673677 -141654670 + AluJo SINE Alu 144 305 -7 2046 149 7 0 chr4 60673792 60674093 -141654254 + AluSx SINE Alu 1 303 -9 720 150 0 9 chr4 60675850 60675963 -141652384 + AluJ SINE Alu 6 117 -195 29 0 0 0 chr4 60675963 60675992 -141652355 + AT_rich Low_complexity Low_complexity 1 29 0 2683 86 0 0 chr4 60675992 60676340 -141652007 - L1PA14 LINE L1 -9 6152 5805 1112 149 5 32 chr4 60676343 60676531 -141651816 + AluJ SINE Alu 107 289 -23 1667 197 7 10 chr4 60677305 60677614 -141650733 + AluJb SINE Alu 1 308 -4 2219 115 0 0 chr4 60678048 60678344 -141650003 - AluSx SINE Alu -16 296 1 1116 204 198 25 chr4 60679974 60680292 -141648055 - MLT1A2 LTR MaLR 0 374 2 424 306 158 20 chr4 60680605 60680909 -141647438 + L3 LINE CR1 1146 1491 -86 28 29 0 0 chr4 60680970 60681005 -141647342 + AT_rich Low_complexity Low_complexity 1 35 0 2150 127 0 10 chr4 60681261 60681560 -141646787 - AluSx SINE Alu -16 296 1 387 290 140 11 chr4 60681738 60681924 -141646423 + MIR SINE MIR 40 249 -13 200 320 67 0 chr4 60681981 60682056 -141646291 + MIR3 SINE MIR 124 203 -5 717 223 122 15 chr4 60682159 60682356 -141645991 - MIR SINE MIR -42 220 3 779 256 57 13 chr4 60683816 60684046 -141644301 - MIR SINE MIR -12 250 11 249 196 0 0 chr4 60684126 60684177 -141644170 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 1010 174 6 0 chr4 60684513 60684674 -141643673 - FRAM SINE Alu -15 161 1 292 254 70 0 chr4 60686089 60686160 -141642187 + MIR3 SINE MIR 102 177 -31 221 309 85 0 chr4 60686174 60686268 -141642079 + L3b LINE CR1 1297 1398 -185 557 183 142 33 chr4 60686789 60686909 -141641438 - FLAM_A SINE Alu 0 133 1 730 316 71 35 chr4 60686920 60687470 -141640877 - L1MC4a LINE L1 -1926 5882 5313 403 293 14 41 chr4 60687574 60687721 -141640626 + L2 LINE L2 3171 3313 0 1762 173 20 13 chr4 60688770 60689070 -141639277 - AluJo SINE Alu -10 302 1 288 299 25 46 chr4 60689077 60689318 -141639029 - HAL1b LINE L1 -994 354 119 2792 113 6 0 chr4 60689966 60690328 -141638019 - THE1B LTR MaLR 0 364 1 2225 92 0 0 chr4 60690714 60690998 -141637349 - AluSq SINE Alu -12 301 18 367 304 48 0 chr4 60691730 60691855 -141636492 - MIR SINE MIR -76 186 56 443 150 0 0 chr4 60691864 60691924 -141636423 + AluJ/FLAM SINE Alu 2 61 -251 1743 171 47 0 chr4 60691958 60692117 -141636230 - AluJo SINE Alu -22 290 111 189 0 0 0 chr4 60692117 60692138 -141636209 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1743 171 47 0 chr4 60692138 60692253 -141636094 - AluJo SINE Alu -201 111 3 540 236 60 75 chr4 60692591 60692726 -141635621 - MIR SINE MIR -17 245 112 2200 120 0 10 chr4 60692726 60693034 -141635313 + AluSx SINE Alu 1 305 -7 540 236 60 75 chr4 60693034 60693097 -141635250 - MIR SINE MIR -150 112 50 309 51 0 0 chr4 60793600 60793639 -141534708 + (CA)n Simple_repeat Simple_repeat 2 40 0 781 178 72 24 chr4 60793639 60793847 -141534500 - LTR37A LTR ERV1 -163 263 46 3156 153 12 40 chr4 60793987 60794556 -141533791 + MER34B LTR ERV1 1 553 -12 904 330 84 1 chr4 60794679 60794973 -141533374 + L2 LINE L2 2782 3142 -171 748 263 11 0 chr4 60794973 60795159 -141533188 - MER5A DNA MER1_type -1 188 1 904 330 84 1 chr4 60795159 60795347 -141533000 + L2 LINE L2 3142 3313 0 351 0 0 0 chr4 60796066 60796105 -141532242 + (CA)n Simple_repeat Simple_repeat 1 39 0 1884 130 47 4 chr4 60796117 60796394 -141531953 + AluJb SINE Alu 1 289 -23 515 250 120 5 chr4 60796444 60796636 -141531711 + MIR SINE MIR 1 214 -48 452 235 215 7 chr4 60798236 60798385 -141529962 + MER5A DNA MER1_type 4 183 -6 293 286 17 42 chr4 60799001 60799120 -141529227 + MIR SINE MIR 65 180 -82 1866 173 0 7 chr4 60799148 60799443 -141528904 + AluJo SINE Alu 1 293 -19 2964 3 0 0 chr4 60800995 60801306 -141527041 - AluYb8 SINE Alu -7 311 1 2050 37 4 0 chr4 60801437 60801701 -141526646 + L1PA3 LINE L1 5895 6159 0 823 157 0 14 chr4 60802853 60802993 -141525354 - FLAM_C SINE Alu 0 143 6 415 209 70 52 chr4 60803173 60803288 -141525059 - L2 LINE L2 -6 3307 3191 1593 199 40 14 chr4 60803436 60803783 -141524564 + MLT1A1 LTR MaLR 10 365 0 589 234 25 19 chr4 60804726 60804884 -141523463 + MLT1K LTR MaLR 407 565 -23 351 275 107 20 chr4 60805531 60805692 -141522655 + MLT1J2 LTR MaLR 65 250 -261 948 152 6 30 chr4 60805781 60805946 -141522401 - FRAM SINE Alu -14 162 2 2487 126 58 22 chr4 60805995 60806407 -141521940 - MSTA LTR MaLR 0 428 2 994 177 50 6 chr4 60806449 60806630 -141521717 + MER5A DNA MER1_type 1 189 0 246 299 205 32 chr4 60806946 60807246 -141521101 - MER102a DNA MER1_type 0 330 1 23 0 0 0 chr4 60807937 60807960 -141520387 + AT_rich Low_complexity Low_complexity 1 23 0 476 299 167 31 chr4 60808261 60808711 -141519636 - L1MC4a LINE L1 -1927 5881 5342 1509 157 24 45 chr4 60808711 60809029 -141519318 + AluJo SINE Alu 1 312 0 476 299 167 31 chr4 60809029 60809123 -141519224 - L1MC4a LINE L1 -2466 5342 5262 2125 128 3 0 chr4 60809133 60809431 -141518916 - AluSx SINE Alu -13 299 1 195 376 50 0 chr4 60812179 60812280 -141516067 + L2 LINE L2 3134 3239 -33 236 290 65 37 chr4 60812696 60812803 -141515544 + LTR33A LTR ERVL 53 162 -361 1763 227 135 36 chr4 60812931 60813456 -141514891 + MLT1E LTR MaLR 15 591 -2 312 266 104 32 chr4 60813503 60813657 -141514690 + LTR33A LTR ERVL 304 468 -55 1715 177 174 45 chr4 60814810 60815257 -141513090 + MLT1D LTR MaLR 1 505 0 263 240 306 8 chr4 60815497 60815618 -141512729 - MIR SINE MIR -70 192 36 264 218 141 0 chr4 60816140 60816218 -141512129 + MIR SINE MIR 134 222 -40 475 325 12 6 chr4 60816282 60816448 -141511899 + (CTA)n Simple_repeat Simple_repeat 2 168 0 787 283 17 13 chr4 60816863 60817093 -141511254 - MIR SINE MIR -1 261 31 182 221 15 73 chr4 60817162 60817230 -141511117 + L2 LINE L2 3209 3272 0 3057 126 61 29 chr4 60817510 60818078 -141510269 + Charlie3 DNA MER1_type 1 2702 -8 328 250 87 0 chr4 60818192 60818296 -141510051 - MIR3 SINE MIR -11 197 85 4600 163 32 5 chr4 60818463 60819277 -141509070 + L1MA9 LINE L1 5476 6311 -1 190 372 58 0 chr4 60820580 60820666 -141507681 - MIR SINE MIR -96 166 76 357 280 201 0 chr4 60821411 60821600 -141506747 - MIR SINE MIR -14 248 22 300 91 0 0 chr4 60821841 60821885 -141506462 + (TG)n Simple_repeat Simple_repeat 1 44 0 237 200 0 40 chr4 60822919 60822969 -141505378 - LTR67 LTR ERVL -1 556 509 1465 203 25 18 chr4 60823284 60823595 -141504752 + AluJo SINE Alu 1 313 0 21 57 0 0 chr4 60824469 60824504 -141503843 + AT_rich Low_complexity Low_complexity 1 35 0 428 227 0 78 chr4 60824957 60825085 -141503262 + MIR3 SINE MIR 67 184 -24 954 123 14 0 chr4 60825550 60825688 -141502659 + MLT1A1 LTR MaLR 1 140 -225 619 258 30 83 chr4 60825687 60825950 -141502397 - MER21B LTR ERV1 -259 346 98 * 329 250 83 9 chr4 60825928 60826036 -141502311 - MER77 LTR ERV1 -413 192 77 * 661 235 150 9 chr4 60826195 60826408 -141501939 + MIR SINE MIR 2 244 -18 432 233 58 0 chr4 60827419 60827522 -141500825 + MIR SINE MIR 134 242 -20 3411 22 15 2 chr4 60827535 60827943 -141500404 - L1HS LINE L1 0 6155 5743 1496 150 0 75 chr4 60828182 60828462 -141499885 - AluJo SINE Alu -53 259 1 8451 178 20 22 chr4 60828953 60830107 -141498240 - L1PB3 LINE L1 0 6154 4999 11310 38 5 40 chr4 60830107 60831539 -141496808 + SVA Other Other 5 1386 0 8451 178 20 22 chr4 60831539 60831687 -141496660 - L1PB3 LINE L1 -1155 4999 4852 2503 11 0 0 chr4 60831687 60831954 -141496393 + AluYb8 SINE Alu 41 307 -11 8451 178 20 22 chr4 60831954 60833600 -141494747 - L1PB3 LINE L1 -1302 4852 3216 2127 142 0 0 chr4 60833600 60833903 -141494444 - AluSx SINE Alu -9 303 1 8451 178 20 22 chr4 60833903 60834032 -141494315 - L1PB3 LINE L1 -2938 3216 3088 234 269 50 76 chr4 60834108 60834227 -141494120 - L2 LINE L2 -2 3311 3196 947 254 112 33 chr4 60834327 60834835 -141493512 + MLT1G1 LTR MaLR 5 593 -2 304 313 62 57 chr4 60836003 60836214 -141492133 + MIR SINE MIR 38 249 -13 4824 89 5 0 chr4 60836374 60836971 -141491376 - MER4A LTR ERV1 0 600 1 2593 237 64 47 chr4 60837208 60838004 -141490343 + MER21B LTR ERV1 1 810 -53 212 333 16 33 chr4 60838506 60838689 -141489658 + CT-rich Low_complexity Low_complexity 1 180 0 2055 117 11 0 chr4 60838921 60839237 -141489110 - AluSx SINE Alu 0 319 1 693 276 42 29 chr4 60839624 60839863 -141488484 + MIR SINE MIR 14 255 -7 651 203 63 14 chr4 60841100 60841243 -141487104 + MIR SINE MIR 2 151 -111 1969 157 10 0 chr4 60841290 60841589 -141486758 - AluSx SINE Alu -10 302 1 314 243 39 58 chr4 60841590 60841693 -141486654 + MIR SINE MIR 114 214 -48 * 628 215 11 68 chr4 60841681 60841697 -141486650 + MIR SINE MIR 96 111 -151 2895 101 0 3 chr4 60841697 60842062 -141486285 + THE1B LTR MaLR 1 364 0 628 215 11 68 chr4 60842062 60842222 -141486125 + MIR SINE MIR 111 262 0 223 204 0 93 chr4 60842867 60842921 -141485426 - L2 LINE L2 0 3272 3224 664 265 120 4 chr4 60843032 60843266 -141485081 - MIR SINE MIR 0 262 2 252 265 31 41 chr4 60843353 60843451 -141484896 - LTR16C LTR ERVL -314 177 81 357 112 55 0 chr4 60843520 60843593 -141484754 - MIR SINE MIR -76 132 54 2495 164 27 5 chr4 60843606 60844044 -141484303 + MLT1C LTR MaLR 20 467 0 510 289 41 27 chr4 60844250 60844464 -141483883 - MIR SINE MIR -37 225 12 22 0 0 0 chr4 60845199 60845221 -141483126 + AT_rich Low_complexity Low_complexity 1 22 0 2235 120 3 0 chr4 60845991 60846300 -141482047 - AluSq SINE Alu -3 310 1 21 36 0 0 chr4 60846378 60846406 -141481941 + AT_rich Low_complexity Low_complexity 1 28 0 180 269 39 0 chr4 60846407 60846459 -141481888 + L2 LINE L2 3138 3191 -81 459 283 56 107 chr4 60847930 60848163 -141480184 - L3 LINE CR1 -3 1574 1354 * 1042 275 143 23 chr4 60848161 60848808 -141479539 - L2 LINE L2 -10 3303 2585 2243 118 0 0 chr4 60849079 60849375 -141478972 - AluSx SINE Alu -16 296 1 236 304 52 9 chr4 60849556 60849671 -141478676 - L3 LINE CR1 -338 1239 1120 497 342 35 19 chr4 60849876 60850133 -141478214 + MIR SINE MIR 2 262 0 499 303 63 11 chr4 60850624 60850799 -141477548 - MIR3 SINE MIR -11 197 14 2203 101 3 0 chr4 60850922 60851209 -141477138 - AluSc SINE Alu -21 288 1 460 279 93 0 chr4 60851400 60851529 -141476818 + L2 LINE L2 3171 3311 -2 255 193 0 35 chr4 60851530 60851587 -141476760 - L2 LINE L2 -17 3255 3201 3305 128 40 0 chr4 60851991 60852490 -141475857 - L1PA16 LINE L1 -9 6157 5639 4981 168 13 48 chr4 60852595 60853788 -141474559 + L1PB1 LINE L1 4161 5229 -922 2033 100 0 0 chr4 60853788 60854048 -141474299 + AluSc SINE Alu 49 308 -1 4981 168 13 48 chr4 60854048 60854886 -141473461 + L1PB1 LINE L1 5229 6095 -56 383 221 122 37 chr4 60855186 60855358 -141472989 + MIR SINE MIR 5 190 -67 281 252 8 126 chr4 60855433 60855560 -141472787 - MIR SINE MIR -63 199 88 353 294 37 0 chr4 60856370 60856479 -141471868 + MER103 DNA DNA 8 120 -46 466 163 33 11 chr4 60856700 60856792 -141471555 - MLT1E LTR MaLR -196 397 304 295 314 38 24 chr4 60857106 60857292 -141471055 + MIR SINE MIR 16 203 -59 750 261 72 5 chr4 60857302 60857524 -141470823 + MIR SINE MIR 5 241 -21 966 196 0 12 chr4 60857646 60857809 -141470538 + FRAM SINE Alu 1 160 -16 298 220 11 66 chr4 60857840 60857887 -141470460 + MARNA DNA Mariner 275 316 -270 2165 235 80 30 chr4 60857887 60858452 -141469895 - MLT1E LTR MaLR 0 593 1 298 220 11 66 chr4 60858452 60858495 -141469852 + MARNA DNA Mariner 316 360 -226 377 300 91 0 chr4 60858505 60858615 -141469732 - MARNA DNA Mariner -395 191 72 287 274 41 0 chr4 60859913 60859986 -141468361 + MIR SINE MIR 50 125 -83 273 359 58 45 chr4 60860212 60860571 -141467776 - L2 LINE L2 0 3313 2950 324 204 195 44 chr4 60861675 60861788 -141466559 - MIR SINE MIR -89 173 44 742 278 43 36 chr4 60861880 60862182 -141466165 + LTR16A LTR ERVL 1 304 -146 266 333 8 49 chr4 60862291 60862414 -141465933 + MIR SINE MIR 17 134 -74 356 76 0 45 chr4 60862851 60862917 -141465430 + (GA)n Simple_repeat Simple_repeat 2 64 0 454 266 0 56 chr4 60862934 60863077 -141465270 + MER112 DNA MER1_type 18 152 -108 20559 157 13 58 chr4 60863236 60863927 -141464420 - L1PA13 LINE L1 -11 6152 5432 1914 157 3 3 chr4 60863927 60864213 -141464134 + AluSx SINE Alu 1 286 -26 20559 157 13 58 chr4 60864213 60867618 -141460729 - L1PA13 LINE L1 -731 5432 2351 2042 53 0 8 chr4 60867618 60867864 -141460483 - L1PA4 LINE L1 -3 6152 5909 20559 157 13 58 chr4 60867864 60869075 -141459272 - L1PA13 LINE L1 -3812 2351 1088 201 259 19 0 chr4 60869106 60869160 -141459187 + (CATTC)n Simple_repeat Simple_repeat 5 59 0 773 217 12 12 chr4 60870517 60870678 -141457669 - MER20 DNA MER1_type -4 215 55 1592 167 0 22 chr4 60870678 60870953 -141457394 + AluJo SINE Alu 1 269 -43 366 149 64 75 chr4 60870980 60871074 -141457273 - MER20 DNA MER1_type -123 96 4 2343 94 3 3 chr4 60871200 60871498 -141456849 - AluSp SINE Alu -15 298 1 1740 165 49 3 chr4 60871510 60871820 -141456527 - MSTB LTR MaLR -2 411 101 306 0 0 0 chr4 60872681 60872715 -141455632 + (CA)n Simple_repeat Simple_repeat 2 35 0 185 182 18 0 chr4 60873002 60873057 -141455290 + GA-rich Low_complexity Low_complexity 1 56 0 284 228 127 13 chr4 60873168 60873247 -141455100 + L2 LINE L2 3219 3306 -7 196 252 210 14 chr4 60873319 60873462 -141454885 - MIR3 SINE MIR -6 202 32 350 316 52 26 chr4 60873618 60873773 -141454574 + MER5B DNA MER1_type 1 159 -19 513 273 79 32 chr4 60874003 60874219 -141454128 + MLT1J LTR MaLR 23 248 -263 297 217 0 0 chr4 60874237 60874297 -141454050 + MLT1J LTR MaLR 409 468 -43 423 242 121 40 chr4 60874613 60874712 -141453635 + MLT1J1 LTR MaLR 29 117 -329 1129 259 67 46 chr4 60875678 60876114 -141452233 - MLT1J1 LTR MaLR -1 445 1 433 257 104 13 chr4 60876363 60876537 -141451810 + MIR SINE MIR 20 205 -57 191 163 47 0 chr4 60877300 60877343 -141451004 + MIR SINE MIR 13 57 -205 526 100 33 33 chr4 60877359 60877449 -141450898 - L1MA9 LINE L1 0 6312 6223 206 130 22 43 chr4 60877450 60877496 -141450851 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 5588 140 15 42 chr4 60877499 60877999 -141450348 - L1MA9 LINE L1 -78 6234 5722 333 0 0 0 chr4 60877999 60878036 -141450311 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 5588 140 15 42 chr4 60878036 60878594 -141449753 - L1MA9 LINE L1 -590 5722 5203 463 282 88 0 chr4 60878605 60878775 -141449572 + MIR SINE MIR 73 257 -5 1421 216 61 29 chr4 60878904 60879283 -141449064 + MSTD LTR MaLR 6 396 0 884 262 66 25 chr4 60879779 60880065 -141448282 - LTR16A LTR ERVL 0 450 153 211 306 36 36 chr4 60881255 60881366 -141446981 - MIR SINE MIR -75 187 77 271 281 0 91 chr4 60881634 60881755 -141446592 + MER102a DNA MER1_type 221 330 0 207 293 103 17 chr4 60881761 60881877 -141446470 - MIR3 SINE MIR -53 155 30 469 264 200 7 chr4 60882054 60882209 -141446138 + MIR3 SINE MIR 17 201 -7 2410 99 78 20 chr4 60882376 60882720 -141445627 - THE1B LTR MaLR 0 364 1 327 339 32 0 chr4 60882854 60882978 -141445369 + L2 LINE L2 3178 3305 -8 340 295 48 9 chr4 60882993 60883098 -141445249 - L3 LINE CR1 -3 1574 1466 271 356 87 0 chr4 60883116 60883220 -141445127 - L2 LINE L2 -3 3310 3198 191 340 9 107 chr4 60883964 60884179 -141444168 + L2 LINE L2 2824 3017 -255 1168 139 42 25 chr4 60887272 60887510 -141440837 + L1MA8 LINE L1 6050 6291 0 2781 10 0 0 chr4 60888205 60888523 -141439824 + AluYb8 SINE Alu 22 339 0 243 397 22 0 chr4 60888655 60888839 -141439508 + L3b LINE CR1 1117 1304 -279 1582 141 78 75 chr4 60890004 60890338 -141438009 - MER44D DNA MER2_type -3 606 2 189 222 19 37 chr4 60890536 60890590 -141437757 + L2 LINE L2 1933 1985 -1329 615 249 151 0 chr4 60891341 60891526 -141436821 - MIR SINE MIR -4 258 46 297 0 0 0 chr4 60891915 60891948 -141436399 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 254 239 0 0 chr4 60891958 60892004 -141436343 - L2 LINE L2 -20 3252 3207 * 296 246 31 0 chr4 60891999 60892064 -141436283 + MIR SINE MIR 48 114 -148 219 36 0 0 chr4 60892109 60892137 -141436210 + MIR SINE MIR 223 250 -12 196 128 21 43 chr4 60892137 60892156 -141436191 + L2 LINE L2 3268 3313 0 313 259 46 19 chr4 60893036 60893144 -141435203 - L1MD3 LINE L1 -8 7987 7877 253 197 14 42 chr4 60893307 60893378 -141434969 + L2 LINE L2 2710 2778 -536 428 247 159 33 chr4 60893425 60893483 -141434864 + L2 LINE L2 3101 3150 -163 2358 103 0 0 chr4 60893483 60893793 -141434554 - AluSg SINE Alu 0 310 1 428 247 159 33 chr4 60893793 60893916 -141434431 + L2 LINE L2 3150 3305 -8 2617 118 18 20 chr4 60895776 60896167 -141432180 + MLT1B LTR MaLR 1 390 0 528 324 49 59 chr4 60896696 60897020 -141431327 - L3b LINE CR1 -131 1452 1132 412 206 13 97 chr4 60897046 60897201 -141431146 + MER104 DNA Tc2 4 145 -35 311 231 10 7 chr4 60897230 60897311 -141431036 + L1MC4 LINE L1 7522 7668 -205 983 194 15 10 chr4 60897367 60897563 -141430784 - MLT1B LTR MaLR 0 390 194 248 230 103 35 chr4 60897615 60897702 -141430645 - MLT1B LTR MaLR -201 173 81 481 266 119 24 chr4 60901473 60901752 -141426595 - MLT1H1 LTR MaLR 0 555 261 23380 46 6 2 chr4 60901752 60905392 -141422955 - L1PA5 LINE L1 0 6154 2497 7027 130 120 103 chr4 60905399 60907065 -141421282 - pTR5 LTR ERV1 -1 2437 743 18739 84 2 11 chr4 60907067 60907383 -141420964 - L1P LINE L1 -3651 2495 2178 2501 74 0 0 chr4 60907383 60907681 -141420666 - AluY SINE Alu -13 298 1 18739 84 2 11 chr4 60907681 60909881 -141418466 - L1P LINE L1 -3968 2178 1 1006 193 63 1 chr4 60910147 60910403 -141417944 + L1MA6 LINE L1 6000 6297 0 2072 111 31 10 chr4 60910549 60910838 -141417509 - AluSq SINE Alu -18 295 1 3828 137 30 47 chr4 60910858 60911502 -141416845 - L1PA16 LINE L1 -14 6152 5520 674 288 80 9 chr4 60911669 60911881 -141416466 + MIR SINE MIR 11 237 -25 1839 120 70 33 chr4 60912073 60912373 -141415974 - AluSx SINE Alu -1 311 1 1914 170 121 18 chr4 60912904 60913292 -141415055 + MSTA LTR MaLR 1 428 0 417 269 0 85 chr4 60913666 60913878 -141414469 - L2 LINE L2 -1 3312 3119 329 188 12 0 chr4 60914259 60914339 -141414008 + (TCCA)n Simple_repeat Simple_repeat 2 82 0 254 278 28 14 chr4 60914339 60914411 -141413936 - L2 LINE L2 0 3272 3200 360 336 98 0 chr4 60914506 60914649 -141413698 + L2 LINE L2 3116 3272 0 277 181 0 28 chr4 60915907 60915979 -141412368 + (TATG)n Simple_repeat Simple_repeat 3 72 0 2093 130 0 3 chr4 60916832 60917131 -141411216 - AluY SINE Alu -9 302 5 2376 116 77 13 chr4 60917898 60918352 -141409995 - MER1A DNA MER1_type 0 529 1 500 354 63 57 chr4 60918627 60919166 -141409181 + L2 LINE L2 2725 3272 0 399 280 163 36 chr4 60920249 60920556 -141407791 - MLT1J2 LTR MaLR -2 448 103 2143 113 3 0 chr4 60920623 60920940 -141407407 + AluSx SINE Alu 1 318 0 267 295 53 32 chr4 60920975 60921070 -141407277 - L2 LINE L2 -40 3232 3136 2162 134 168 21 chr4 60921070 60921458 -141406889 + LTR47A LTR ERVL 1 445 -7 631 289 36 21 chr4 60921594 60921639 -141406708 - MIR SINE MIR -65 197 154 2315 110 0 0 chr4 60921639 60921948 -141406399 - AluSg SINE Alu -1 309 1 631 289 36 21 chr4 60921948 60922096 -141406251 - MIR SINE MIR -108 154 1 341 365 80 20 chr4 60922123 60922580 -141405767 - L2 LINE L2 -181 3091 2606 545 290 99 0 chr4 60922680 60922842 -141405505 - MIR SINE MIR -73 189 12 373 298 23 46 chr4 60923038 60923169 -141405178 - MIR SINE MIR -117 145 18 2094 126 7 0 chr4 60923369 60923654 -141404693 + AluSx SINE Alu 13 299 -13 863 220 54 6 chr4 60923904 60924072 -141404275 - MER45A DNA AcHobo 0 178 3 610 268 122 20 chr4 60924421 60924789 -141403558 + L1ME3A LINE L1 5219 5626 -536 353 270 26 43 chr4 60924813 60924928 -141403419 + MER5A DNA MER1_type 6 118 -71 414 204 209 37 chr4 60925019 60925210 -141403137 + MER112 DNA MER1_type 35 258 -2 645 214 26 22 chr4 60925270 60925452 -141402895 + L1ME3A LINE L1 5771 5950 -214 230 355 94 7 chr4 60926264 60926402 -141401945 - MIR SINE MIR -71 191 42 656 304 167 34 chr4 60927621 60928058 -141400289 + MLT1K LTR MaLR 1 495 -93 21 57 0 0 chr4 60928064 60928099 -141400248 + AT_rich Low_complexity Low_complexity 1 35 0 482 281 137 46 chr4 60928100 60928561 -141399786 + L2 LINE L2 2596 3084 -188 2092 112 7 0 chr4 60928761 60929047 -141399300 + AluSc SINE Alu 14 301 -8 394 166 61 63 chr4 60929286 60929354 -141398993 + MER53 DNA DNA 3 70 -119 1326 172 57 115 chr4 60929354 60929737 -141398610 - MLT1A1 LTR MaLR -4 361 1 394 166 61 63 chr4 60929737 60929824 -141398523 + MER53 DNA DNA 70 189 0 610 231 127 42 chr4 60930234 60930541 -141397806 + L1ME4a LINE L1 5778 6110 -11 225 171 0 0 chr4 60930660 60930701 -141397646 + L2 LINE L2 3273 3313 0 299 320 25 25 chr4 60930789 60930911 -141397436 + MIR3 SINE MIR 86 207 -1 429 20 0 0 chr4 60932559 60932609 -141395738 + (A)n Simple_repeat Simple_repeat 1 50 0 187 370 73 85 chr4 60932743 60933084 -141395263 + L2 LINE L2 2838 3174 -98 2221 95 3 3 chr4 60934155 60934471 -141393876 + AluSp SINE Alu 1 316 0 2234 101 12 0 chr4 60934861 60935219 -141393128 + L1PA10 LINE L1 5817 6178 0 180 301 21 43 chr4 60935691 60935784 -141392563 + MIR SINE MIR 24 114 -94 261 0 0 0 chr4 60936002 60936031 -141392316 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 268 323 98 23 chr4 60936201 60936334 -141392013 - MER5B DNA MER1_type -29 149 7 325 212 15 0 chr4 60936566 60936632 -141391715 - MER81 DNA DNA 0 114 48 514 365 24 0 chr4 60936642 60936850 -141391497 - MIR SINE MIR -39 223 11 865 213 38 38 chr4 60937353 60937673 -141390674 + L1MC5 LINE L1 7610 7929 -32 256 349 134 0 chr4 60938705 60938854 -141389493 - MIR3 SINE MIR -6 202 34 227 250 83 23 chr4 60939671 60939803 -141388544 - L1MEd LINE L1 -5922 197 58 1609 215 86 25 chr4 60941108 60941583 -141386764 + MLT1D LTR MaLR 2 505 0 240 211 18 0 chr4 60941795 60941852 -141386495 - MLT1I LTR MaLR -281 128 71 264 122 0 0 chr4 60942233 60942274 -141386073 - MLT1A1 LTR MaLR -324 41 1 328 315 9 18 chr4 60943588 60943699 -141384648 + MLT1K LTR MaLR 22 131 -457 403 295 37 42 chr4 60943783 60943973 -141384374 + MLT1K LTR MaLR 371 559 -29 228 317 0 0 chr4 60944527 60944587 -141383760 + L2 LINE L2 3245 3304 -9 248 221 0 15 chr4 60945328 60945396 -141382951 + CT-rich Low_complexity Low_complexity 4 70 0 1461 50 2 2 chr4 60945385 60945744 -141382603 + (TTTCC)n Simple_repeat Simple_repeat 1 540 0 465 175 0 32 chr4 60945731 60945857 -141382490 + CT-rich Low_complexity Low_complexity 3 124 0 635 217 32 19 chr4 60946180 60946337 -141382010 + MIR SINE MIR 3 161 -101 1414 171 108 11 chr4 60946547 60946816 -141381531 - AluJb SINE Alu -17 295 1 2043 230 53 33 chr4 60946970 60947540 -141380807 - MLT1G LTR MaLR -9 581 1 333 270 135 77 chr4 60947779 60948038 -141380309 - L1ME4a LINE L1 -10 6111 5838 21 82 0 0 chr4 60948218 60948267 -141380080 + AT_rich Low_complexity Low_complexity 1 49 0 290 253 58 39 chr4 60948353 60948507 -141379840 - L1ME4a LINE L1 -385 5736 5580 542 264 64 19 chr4 60948526 60948791 -141379556 - L1ME LINE L1 -304 5817 5541 22 56 0 0 chr4 60949243 60949279 -141379068 + AT_rich Low_complexity Low_complexity 1 36 0 256 210 16 16 chr4 60949649 60949711 -141378636 + MLT1J2 LTR MaLR 67 128 -322 3423 64 9 0 chr4 60949757 60950197 -141378150 + L1PA7 LINE L1 5710 6153 -1 2302 90 0 0 chr4 60950199 60950488 -141377859 + AluSp SINE Alu 1 289 -24 243 0 0 0 chr4 60950491 60950518 -141377829 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 333 253 56 22 chr4 60950565 60950748 -141377599 + MLT1I LTR MaLR 249 401 -8 228 270 135 61 chr4 60950855 60951003 -141377344 + MIR3 SINE MIR 28 186 -22 304 343 105 21 chr4 60951430 60951573 -141376774 + L2 LINE L2 3116 3270 -2 689 122 37 0 chr4 60952481 60952588 -141375759 + MSTC LTR MaLR 1 111 -317 * 696 128 17 0 chr4 60952577 60952694 -141375653 + MSTC LTR MaLR 309 427 -1 11657 208 19 7 chr4 60953284 60956802 -141371545 - L1PA15 LINE L1 0 7603 4050 1143 153 91 0 chr4 60956807 60957049 -141371298 - L1PA15 LINE L1 -3947 3637 3374 * 1376 277 32 29 chr4 60957046 60957602 -141370745 - L1PA15 LINE L1 -5486 2095 1538 554 295 92 32 chr4 60957790 60958136 -141370211 - L1PA12 LINE L1 -5688 1893 1527 287 271 229 8 chr4 60959793 60959911 -141368436 + MIR3 SINE MIR 13 156 -52 822 252 65 55 chr4 60962398 60962688 -141365659 - L2 LINE L2 -1 3312 3020 385 276 103 0 chr4 60962774 60962890 -141365457 - MIR SINE MIR -71 191 64 191 262 56 75 chr4 60963640 60963747 -141364600 - L2 LINE L2 -302 2970 2866 1159 159 0 54 chr4 60964451 60964690 -141363657 + Tigger2a DNA MER2_type 1 226 -208 2969 258 77 63 chr4 60964690 60965929 -141362418 - L2 LINE L2 -545 2769 1514 3389 108 14 8 chr4 60966682 60967190 -141361157 + MER9 LTR ERVK 1 511 0 254 368 49 2 chr4 60967292 60967486 -141360861 + MIR SINE MIR 21 222 -40 1038 181 0 21 chr4 60967761 60967954 -141360393 - MER5A DNA MER1_type 0 189 1 1467 214 23 46 chr4 60968119 60968465 -141359882 - MLT1B LTR MaLR -5 385 47 1854 182 72 11 chr4 60968465 60968838 -141359509 - MSTD LTR MaLR 0 396 1 1467 214 23 46 chr4 60968838 60968879 -141359468 - MLT1B LTR MaLR -343 47 7 24 0 0 0 chr4 60969275 60969299 -141359048 + AT_rich Low_complexity Low_complexity 1 24 0 279 0 0 0 chr4 60970604 60970635 -141357712 + (TA)n Simple_repeat Simple_repeat 1 31 0 1987 124 78 32 chr4 60970771 60971119 -141357228 + THE1B LTR MaLR 1 364 0 424 317 52 14 chr4 60971415 60971689 -141356658 + L1ME LINE L1 5191 5480 -641 423 296 94 54 chr4 60971837 60972060 -141356287 + MIR SINE MIR 1 232 -30 333 224 231 28 chr4 60974245 60974388 -141353959 + MIR SINE MIR 77 248 -14 1426 205 43 12 chr4 60974466 60974627 -141353720 - MER58B DNA MER1_type -2079 341 186 2156 160 6 3 chr4 60974627 60974989 -141353358 - MLT1A1 LTR MaLR 0 365 3 1426 205 43 12 chr4 60974989 60975154 -141353193 - MER58B DNA MER1_type -2234 186 5 655 231 157 95 chr4 60975477 60976126 -141352221 + MER21B LTR ERV1 22 709 -154 554 138 18 18 chr4 60976397 60976506 -141351841 + MER53 DNA DNA 1 109 -80 238 199 26 0 chr4 60977135 60977203 -141351144 - MIR SINE MIR -58 150 101 693 281 61 45 chr4 60977348 60977594 -141350753 - MIR SINE MIR -11 251 2 476 224 65 0 chr4 60977681 60977788 -141350559 - MIR SINE MIR -101 161 48 245 335 92 71 chr4 60979035 60979366 -141348981 + L2 LINE L2 2358 2708 -606 640 280 6 6 chr4 60979366 60979541 -141348806 + MER5B DNA MER1_type 4 178 0 245 335 92 71 chr4 60979541 60979797 -141348550 + L2 LINE L2 2708 2957 -357 2462 246 64 18 chr4 60979904 60980610 -141347737 - MER21B LTR ERV1 -125 738 1 1777 146 162 0 chr4 60980659 60980980 -141347367 - MER83C LTR ERV1 0 373 1 284 271 127 75 chr4 60981219 60981581 -141346766 - L2 LINE L2 -350 2964 2584 731 228 155 15 chr4 60981883 60982089 -141346258 + MIR SINE MIR 28 262 0 1188 229 98 45 chr4 60982281 60982722 -141345625 + MLT2B1 LTR ERVL 1 464 -56 212 245 0 0 chr4 60982726 60982775 -141345572 + CT-rich Low_complexity Low_complexity 1 49 0 196 130 43 0 chr4 60982775 60982821 -141345526 + (TA)n Simple_repeat Simple_repeat 1 48 0 432 0 0 0 chr4 60982862 60982910 -141345437 + (TA)n Simple_repeat Simple_repeat 1 48 0 306 361 101 0 chr4 60985068 60985187 -141343160 - L2 LINE L2 0 3272 3142 243 289 81 53 chr4 60985224 60985470 -141342877 - MLT1I LTR MaLR -103 306 54 5894 88 3 47 chr4 60985803 60986422 -141341925 + L1PB1 LINE L1 5203 5766 -385 252 86 0 0 chr4 60986422 60986457 -141341890 + (TG)n Simple_repeat Simple_repeat 2 36 0 5894 88 3 47 chr4 60986457 60986827 -141341520 + L1PB1 LINE L1 5766 6151 0 1037 113 83 0 chr4 60986959 60987127 -141341220 + L1MA9 LINE L1 5639 5820 -471 4222 132 57 0 chr4 60987138 60987819 -141340528 + L1PA16 LINE L1 5436 6155 -11 2394 168 40 10 chr4 60987819 60988312 -141340035 + L1MA9 LINE L1 5798 6307 -5 363 270 143 0 chr4 60989152 60989278 -141339069 - MIR SINE MIR -10 252 109 39944 49 2 1 chr4 60990234 60995423 -141332924 + L1PA3 LINE L1 8 5202 -944 6313 32 0 0 chr4 60995523 60996264 -141332083 + L1PA3 LINE L1 5412 6152 -3 197 293 227 13 chr4 60996412 60996487 -141331860 - MIR SINE MIR -97 111 21 770 223 49 5 chr4 60996790 60996974 -141331373 + MIR SINE MIR 71 262 0 216 188 62 0 chr4 60996980 60997028 -141331319 + MIR SINE MIR 207 257 -5 323 264 188 0 chr4 60998316 60998460 -141329887 - MIR SINE MIR 0 262 92 405 298 0 14 chr4 60998495 60998636 -141329711 + (CTA)n Simple_repeat Simple_repeat 1 139 0 4007 150 7 17 chr4 60998637 60999355 -141328992 + MER50 LTR ERV1 1 711 -23 259 236 14 0 chr4 60999365 60999437 -141328910 + (CTA)n Simple_repeat Simple_repeat 1 73 0 340 238 48 29 chr4 61000059 61000164 -141328183 + L2 LINE L2 3207 3313 0 384 290 49 62 chr4 61001003 61001165 -141327182 - MIR3 SINE MIR 0 208 49 218 274 78 49 chr4 61001402 61001504 -141326843 + L2 LINE L2 3207 3311 -2 200 264 19 0 chr4 61001738 61001791 -141326556 + (TAA)n Simple_repeat Simple_repeat 3 56 0 1817 178 58 51 chr4 61001910 61002303 -141326044 + MSTD LTR MaLR 1 396 0 203 333 10 71 chr4 61002378 61002477 -141325870 - L2 LINE L2 -232 3040 2948 291 367 41 12 chr4 61002517 61002686 -141325661 - L2 LINE L2 -448 2866 2693 339 273 77 113 chr4 61002707 61002938 -141325409 - L2 LINE L2 0 3313 3094 2172 122 23 0 chr4 61002938 61003241 -141325106 + AluSg SINE Alu 1 310 0 339 273 77 113 chr4 61003241 61003320 -141325027 - L2 LINE L2 -219 3094 3014 4226 279 190 25 chr4 61003506 61005899 -141322448 - L2 LINE L2 -5 3308 524 346 304 94 14 chr4 61005980 61006118 -141322229 + L2 LINE L2 3116 3264 -8 228 206 29 29 chr4 61006920 61006988 -141321359 + CT-rich Low_complexity Low_complexity 2 69 0 1924 145 81 16 chr4 61007139 61007511 -141320836 - MSTD LTR MaLR 0 396 1 2127 85 4 0 chr4 61007774 61008044 -141320303 + AluSc SINE Alu 28 298 -11 476 170 20 0 chr4 61008314 61008414 -141319933 + GA-rich Low_complexity Low_complexity 2 103 0 1153 228 133 36 chr4 61008414 61008827 -141319520 - MLT2B2 LTR ERVL -62 453 1 275 250 0 0 chr4 61008841 61008893 -141319454 - MIR SINE MIR -196 66 15 514 216 0 0 chr4 61008899 61008996 -141319351 + MER2 DNA MER2_type 2 98 -247 314 215 0 31 chr4 61008996 61009061 -141319286 - MER2 DNA MER2_type 0 345 283 1199 280 93 18 chr4 61009578 61010305 -141318042 - L2 LINE L2 -61 3252 2481 204 236 91 0 chr4 61010372 61010427 -141317920 + MIR3 SINE MIR 143 202 -6 1931 131 73 25 chr4 61012855 61013213 -141315134 - THE1C LTR MaLR 0 375 1 28 48 0 0 chr4 61014153 61014195 -141314152 + AT_rich Low_complexity Low_complexity 1 42 0 201 318 60 60 chr4 61014329 61014480 -141313867 - L3b LINE CR1 -142 1441 1291 421 205 13 0 chr4 61015553 61015631 -141312716 - MER5B DNA MER1_type 0 178 100 913 333 61 11 chr4 61016146 61016605 -141311742 + L2 LINE L2 1258 1739 -1575 1013 270 71 19 chr4 61016637 61017048 -141311299 + LTR16B LTR ERVL 33 464 0 1158 271 144 21 chr4 61017053 61017587 -141310760 + L2 LINE L2 1746 2345 -969 1010 258 109 28 chr4 61018179 61018789 -141309558 + L2 LINE L2 2627 3291 -22 471 182 0 0 chr4 61020415 61020503 -141307844 - MLT1I LTR MaLR 0 409 322 386 312 57 21 chr4 61021432 61021573 -141306774 - MER5A DNA MER1_type -43 146 1 346 322 71 28 chr4 61023382 61023593 -141304754 + MIR SINE MIR 2 221 -41 370 284 0 0 chr4 61023639 61023720 -141304627 - MLT1J1 LTR MaLR -128 318 238 195 85 64 0 chr4 61023767 61023814 -141304533 + (TTAAA)n Simple_repeat Simple_repeat 3 52 0 696 201 7 7 chr4 61023836 61023985 -141304362 - MER106B DNA MER1_type -910 149 1 841 224 19 24 chr4 61024004 61024214 -141304133 - MLT1J1 LTR MaLR -222 224 16 189 318 0 0 chr4 61024414 61024458 -141303889 - L3 LINE CR1 -19 1558 1515 225 349 0 0 chr4 61024617 61024680 -141303667 - L2 LINE L2 -5 3308 3246 329 243 75 65 chr4 61024731 61024838 -141303509 + L2 LINE L2 3203 3310 -3 311 163 151 12 chr4 61025073 61025159 -141303188 + MLT1C LTR MaLR 9 106 -361 670 247 17 11 chr4 61025169 61025347 -141303000 + MLT1C LTR MaLR 289 467 0 25 0 0 0 chr4 61025657 61025682 -141302665 + AT_rich Low_complexity Low_complexity 1 25 0 23 68 0 0 chr4 61025972 61026016 -141302331 + AT_rich Low_complexity Low_complexity 1 44 0 208 259 0 19 chr4 61026422 61026476 -141301871 + CT-rich Low_complexity Low_complexity 1 53 0 356 272 0 12 chr4 61026771 61026852 -141301495 - L2 LINE L2 -10 3262 3183 405 299 54 18 chr4 61027124 61027291 -141301056 + MIR3 SINE MIR 21 193 -15 188 289 0 0 chr4 61027480 61027525 -141300822 + L3 LINE CR1 1172 1216 -361 2059 132 26 34 chr4 61027535 61027913 -141300434 + THE1C LTR MaLR 1 375 0 10175 104 57 9 chr4 61027913 61029421 -141298926 + THE1C-int LTR MaLR 1 1580 0 886 179 38 31 chr4 61029421 61029725 -141298622 + THE1C LTR MaLR 1 364 0 459 339 90 25 chr4 61029968 61030213 -141298134 + L3 LINE CR1 1310 1570 -7 243 292 34 34 chr4 61031899 61031988 -141296359 + MIR SINE MIR 57 145 -63 209 182 18 0 chr4 61032062 61032117 -141296230 + (ATG)n Simple_repeat Simple_repeat 3 58 0 935 217 14 82 chr4 61032165 61032515 -141295832 - MLT2B1 LTR ERVL -103 412 1 981 228 77 20 chr4 61032784 61033030 -141295317 + MIR SINE MIR 2 261 -1 405 0 0 0 chr4 61033189 61033234 -141295113 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr4 61033505 61033526 -141294821 + AT_rich Low_complexity Low_complexity 1 21 0 202 250 0 0 chr4 61033530 61033574 -141294773 + (TA)n Simple_repeat Simple_repeat 2 45 0 256 309 62 0 chr4 61034113 61034210 -141294137 + L2 LINE L2 2644 2746 -568 * 405 326 117 0 chr4 61034194 61034424 -141293923 + L2 LINE L2 3048 3304 -9 266 306 245 5 chr4 61034520 61034716 -141293631 - MIR SINE MIR 0 262 20 292 114 0 0 chr4 61035087 61035131 -141293216 + (TTTA)n Simple_repeat Simple_repeat 2 132 0 2078 106 0 20 chr4 61035131 61035424 -141292923 - AluSq SINE Alu -1 330 1 1326 74 0 0 chr4 61035434 61035442 -141292905 + (TTTC)n Simple_repeat Simple_repeat 1 208 0 1326 74 0 0 chr4 61035442 61035642 -141292705 + (TTTC)n Simple_repeat Simple_repeat 1 200 0 2024 129 7 7 chr4 61035660 61035954 -141292393 - AluSg SINE Alu -16 294 1 342 242 42 21 chr4 61036688 61036783 -141291564 + MIR SINE MIR 148 244 -18 725 237 87 6 chr4 61036992 61037165 -141291182 - MIR SINE MIR -32 230 44 245 158 0 0 chr4 61037323 61037361 -141290986 - MER91 DNA MER1_type -151 39 2 226 367 124 18 chr4 61038403 61038572 -141289775 - MIR SINE MIR -44 218 32 25 0 0 0 chr4 61039437 61039462 -141288885 + AT_rich Low_complexity Low_complexity 1 25 0 465 364 23 6 chr4 61040987 61041160 -141287187 - MIR3 SINE MIR -3 205 30 280 330 45 48 chr4 61043201 61043492 -141284855 - L2 LINE L2 -161 3111 2822 2059 135 0 0 chr4 61043560 61043871 -141284476 + AluSg SINE Alu 1 311 0 2689 230 45 10 chr4 61044667 61045316 -141283031 - L1ME1 LINE L1 -6 6160 5478 2095 110 3 10 chr4 61045316 61045617 -141282730 - AluY SINE Alu -12 299 1 2689 230 45 10 chr4 61045617 61045751 -141282596 - L1ME1 LINE L1 -688 5478 5350 1849 253 26 5 chr4 61045767 61046291 -141282056 + L1M4 LINE L1 4769 5307 -839 2160 115 0 3 chr4 61046291 61046596 -141281751 + AluSc SINE Alu 1 304 -5 1849 253 26 5 chr4 61046596 61046644 -141281703 + L1M4 LINE L1 5307 5353 -793 2072 116 27 0 chr4 61047514 61047806 -141280541 - AluSq SINE Alu -13 300 1 510 292 15 41 chr4 61048658 61048853 -141279494 - MIR3 SINE MIR -3 205 16 791 255 17 51 chr4 61050202 61050437 -141277910 - MIR SINE MIR -35 227 1 310 286 60 23 chr4 61050775 61050908 -141277439 - L2 LINE L2 -4 3309 3172 514 299 32 0 chr4 61051558 61051712 -141276635 - MIR SINE MIR -89 173 15 295 316 98 33 chr4 61053298 61053513 -141274834 - MIR SINE MIR -14 248 20 432 219 0 0 chr4 61053752 61053834 -141274513 + L2 LINE L2 3227 3308 -5 2825 156 21 21 chr4 61054625 61055208 -141273139 - L1MA8 LINE L1 0 7710 7128 11436 207 35 29 chr4 61055211 61055533 -141272814 - L1MA8 LINE L1 -1289 6276 5957 1884 110 14 3 chr4 61055533 61055823 -141272524 - L1MA3 LINE L1 -3 6302 6010 11436 207 35 29 chr4 61055823 61056452 -141271895 - L1MA8 LINE L1 -1608 5957 5333 2104 122 14 3 chr4 61056452 61056746 -141271601 - AluSx SINE Alu -15 297 1 11436 207 35 29 chr4 61056746 61060036 -141268311 - L1MA8 LINE L1 -2232 5333 2012 1639 269 30 45 chr4 61060062 61060684 -141267663 - L1MA8 LINE L1 -6411 1078 466 1397 226 107 34 chr4 61060697 61061135 -141267212 + MLT2B1 LTR ERVL 3 472 -48 1509 217 35 3 chr4 61061196 61061564 -141266783 - L1MB1 LINE L1 -68 6121 5742 249 227 15 0 chr4 61061559 61061625 -141266722 + L1MB1 LINE L1 6119 6185 -4 * 723 168 65 0 chr4 61061643 61061798 -141266549 + L1MA10 LINE L1 6163 6327 -7 2343 116 8 8 chr4 61062414 61062768 -141265579 - THE1A LTR MaLR -1 354 1 5303 141 1 6 chr4 61063152 61064064 -141264283 + L1PA10 LINE L1 3973 4880 -1266 6179 109 3 16 chr4 61064078 61064423 -141263924 + L1PA10 LINE L1 5058 5406 -762 2551 110 3 3 chr4 61064423 61064778 -141263569 - THE1A LTR MaLR 0 355 1 6179 109 3 16 chr4 61064778 61065554 -141262793 + L1PA10 LINE L1 5406 6167 -1 366 349 110 18 chr4 61065869 61066087 -141262260 - MIR SINE MIR -19 243 6 207 409 34 7 chr4 61066188 61066337 -141262010 + L2 LINE L2 2892 3044 -228 741 253 20 50 chr4 61066446 61066725 -141261622 + MLT1F1 LTR MaLR 1 348 -219 225 0 0 0 chr4 61066725 61066750 -141261597 + (TGAG)n Simple_repeat Simple_repeat 4 28 0 741 253 20 50 chr4 61066750 61066964 -141261383 + MLT1F1 LTR MaLR 348 567 0 1151 198 20 108 chr4 61067599 61067999 -141260348 - MLT1A1 LTR MaLR 0 365 1 207 69 0 0 chr4 61068913 61068942 -141259405 + (TG)n Simple_repeat Simple_repeat 2 30 0 289 234 241 51 chr4 61069722 61069880 -141258467 + MIR SINE MIR 3 190 -72 21 0 0 0 chr4 61070110 61070131 -141258216 + AT_rich Low_complexity Low_complexity 1 21 0 941 270 32 56 chr4 61070349 61070757 -141257590 + MLT1J1 LTR MaLR 38 435 -11 369 287 70 0 chr4 61071277 61071392 -141256955 + MIR3 SINE MIR 65 187 -21 432 328 70 0 chr4 61072326 61072454 -141255893 - L2 LINE L2 0 3272 3136 21 0 0 0 chr4 61073080 61073101 -141255246 + AT_rich Low_complexity Low_complexity 1 21 0 309 140 0 0 chr4 61073101 61073158 -141255189 - L1PB1 LINE L1 -134 6017 5961 588 237 13 19 chr4 61073158 61073314 -141255033 - AluSg/x SINE Alu -18 292 138 1529 91 5 14 chr4 61073725 61073935 -141254412 + AluSg/x SINE Alu 81 288 -22 241 356 0 11 chr4 61073936 61074023 -141254324 - MIR SINE MIR -157 105 20 24 71 0 35 chr4 61075582 61075667 -141252680 + AT_rich Low_complexity Low_complexity 1 82 0 30614 60 3 0 chr4 61076400 61080502 -141247845 - L1P LINE L1 -2024 4122 7 404 97 24 81 chr4 61080505 61080629 -141247718 + (TTCC)n Simple_repeat Simple_repeat 1 117 0 215 223 397 16 chr4 61081118 61081239 -141247108 - MIR SINE MIR -49 213 47 5058 162 21 10 chr4 61081546 61082513 -141245834 - L1P LINE L1 -5169 977 1 2200 165 28 8 chr4 61082944 61083332 -141245015 - MSTD LTR MaLR 0 396 1 1259 152 25 8 chr4 61083487 61083730 -141244617 + L1MA8 LINE L1 6013 6259 -32 509 293 29 0 chr4 61083859 61083999 -141244348 + MIR SINE MIR 100 243 -19 973 219 0 5 chr4 61084261 61084462 -141243885 + MER20 DNA MER1_type 20 219 0 273 337 0 11 chr4 61085055 61085144 -141243203 + L2 LINE L2 3185 3272 0 412 252 17 26 chr4 61085847 61085962 -141242385 - MIR SINE MIR -113 149 36 291 250 25 42 chr4 61086385 61086505 -141241842 + LTR50 LTR ERVL 1 118 -677 387 298 55 0 chr4 61086674 61086855 -141241492 + LTR50 LTR ERVL 493 683 -112 1667 246 47 2 chr4 61087561 61088032 -141240315 - HAL1 LINE L1 -631 1876 1385 252 282 0 55 chr4 61088588 61088698 -141239649 - HAL1 LINE L1 -991 1516 1413 1387 229 46 40 chr4 61089251 61089269 -141239078 - MLT1A2 LTR MaLR 0 374 358 1996 201 33 79 chr4 61089269 61089850 -141238497 + MLT2B3 LTR ERVL 1 554 0 1387 229 46 40 chr4 61089850 61090203 -141238144 - MLT1A2 LTR MaLR -16 358 1 394 324 94 68 chr4 61090288 61090640 -141237707 + L2 LINE L2 2900 3260 -12 847 298 9 4 chr4 61092316 61092544 -141235803 + MIR SINE MIR 1 229 -33 21 0 0 0 chr4 61092632 61092653 -141235694 + AT_rich Low_complexity Low_complexity 1 21 0 1493 39 0 0 chr4 61093167 61093348 -141234999 - L1PA2 LINE L1 -1 6154 5974 287 338 151 5 chr4 61093667 61093886 -141234461 - MIR SINE MIR 0 262 12 219 178 44 0 chr4 61094046 61094091 -141234256 + (TG)n Simple_repeat Simple_repeat 2 48 0 216 217 24 36 chr4 61094070 61094153 -141234194 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 * 853 163 13 7 chr4 61095327 61095480 -141232867 - THE1B LTR MaLR -210 154 1 883 243 37 5 chr4 61095492 61095706 -141232641 + MSTD LTR MaLR 168 388 -8 1650 264 41 2 chr4 61095710 61096221 -141232126 - L1 LINE L1 -3251 3916 3386 3444 153 27 0 chr4 61096224 61096850 -141231497 - L1MA4 LINE L1 -11 6289 5647 2238 142 25 46 chr4 61096877 61097248 -141231099 + MSTA LTR MaLR 1 378 -50 14886 43 5 1 chr4 61097248 61099851 -141228496 - L1PA5 LINE L1 -13 6141 3530 2238 142 25 46 chr4 61099851 61099870 -141228477 + MSTA LTR MaLR 378 396 -32 1720 102 90 8 chr4 61099870 61100161 -141228186 - AluSg SINE Alu 0 310 12 2238 142 25 46 chr4 61100161 61100206 -141228141 + MSTA LTR MaLR 396 428 0 1944 154 20 36 chr4 61100241 61100734 -141227613 - L1MA4 LINE L1 -655 5645 5146 2460 268 52 40 chr4 61100736 61102814 -141225533 - L1 LINE L1 -3766 3401 1619 1850 164 13 16 chr4 61103311 61103623 -141224724 + AluSx SINE Alu 1 311 -1 304 236 0 0 chr4 61103987 61104042 -141224305 + L2 LINE L2 3191 3245 -27 1234 176 9 0 chr4 61104393 61104626 -141223721 + L1PA12 LINE L1 1 235 -7346 * 7332 233 41 41 chr4 61104622 61107631 -141220716 + L1PA12 LINE L1 608 2486 -4098 1295 159 8 35 chr4 61107631 61107889 -141220458 + L1PA13 LINE L1 5894 6144 -19 504 230 40 7 chr4 61109361 61109513 -141218834 - MER103 DNA DNA -9 157 1 912 143 12 12 chr4 61109841 61110002 -141218345 + THE1B LTR MaLR 204 364 0 11283 102 8 4 chr4 61110002 61111576 -141216771 + THE1B-int LTR MaLR 1 1580 0 2319 135 5 22 chr4 61111576 61111946 -141216401 + THE1B LTR MaLR 1 364 0 779 203 13 0 chr4 61111946 61112104 -141216243 - MSTD LTR MaLR -236 160 1 7200 195 27 40 chr4 61112104 61114653 -141213694 + L1MA9 LINE L1 2891 5354 -937 2233 98 17 7 chr4 61114653 61114950 -141213397 + AluSp SINE Alu 1 300 -13 7200 195 27 40 chr4 61114950 61115201 -141213146 + L1MA9 LINE L1 5354 5607 -684 1592 204 3 13 chr4 61115201 61115500 -141212847 + AluJo SINE Alu 1 296 -16 2097 185 42 12 chr4 61115499 61115962 -141212385 + L1MA9 LINE L1 5810 6305 -7 239 263 26 70 chr4 61116585 61116741 -141211606 - MLT1J LTR MaLR -46 465 317 557 231 82 11 chr4 61116860 61117042 -141211305 - MLT1J LTR MaLR -314 197 3 446 216 294 0 chr4 61117344 61117497 -141210850 + MER58A DNA MER1_type 26 223 -1 292 276 0 0 chr4 61117500 61117558 -141210789 - L2 LINE L2 -54 3218 3161 219 247 0 0 chr4 61118572 61118645 -141209702 + CT-rich Low_complexity Low_complexity 3 75 0 8925 35 4 0 chr4 61118663 61120523 -141207824 - L1PA4 LINE L1 0 6155 4293 653 134 0 0 chr4 61120638 61120735 -141207612 - AluSg SINE Alu -213 97 1 566 183 50 104 chr4 61120807 61120897 -141207450 - MER20 DNA MER1_type 0 219 126 327 25 0 0 chr4 61120897 61120937 -141207410 + (TTA)n Simple_repeat Simple_repeat 3 42 0 17297 27 3 0 chr4 61120937 61123755 -141204592 - L1PA4 LINE L1 -18 6137 3323 566 183 50 104 chr4 61123755 61123865 -141204482 - MER20 DNA MER1_type -91 128 29 237 333 37 23 chr4 61124023 61124239 -141204108 - L1MEd LINE L1 -4914 1205 987 24 0 0 0 chr4 61124283 61124307 -141204040 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 61124454 61124479 -141203868 + AT_rich Low_complexity Low_complexity 1 25 0 16113 74 2 4 chr4 61124479 61127448 -141200899 - L1PA6 LINE L1 -10 6144 3179 215 241 0 0 chr4 61127448 61127502 -141200845 + T-rich Low_complexity Low_complexity 1 54 0 40865 35 21 1 chr4 61127502 61133533 -141194814 - L1HS LINE L1 0 6155 1 14973 88 1 6 chr4 61133529 61135769 -141192578 - L1PA6 LINE L1 -2946 3200 972 * 2355 105 0 6 chr4 61135989 61136303 -141192044 + AluSx SINE Alu 1 312 0 21 36 0 0 chr4 61136594 61136622 -141191725 + AT_rich Low_complexity Low_complexity 1 28 0 1794 156 14 0 chr4 61136701 61136977 -141191370 + AluSx SINE Alu 1 280 -32 274 211 28 0 chr4 61137201 61137272 -141191075 + L1M LINE L1 5356 5428 -872 21 57 0 0 chr4 61138471 61138506 -141189841 + AT_rich Low_complexity Low_complexity 1 35 0 483 287 45 67 chr4 61139019 61139242 -141189105 + MIR SINE MIR 19 236 -26 293 271 136 21 chr4 61139730 61139870 -141188477 + MIR SINE MIR 19 174 -88 182 295 26 39 chr4 61139864 61139942 -141188405 + MER5A DNA MER1_type 113 189 0 * 333 0 0 0 chr4 61140112 61140149 -141188198 + (TG)n Simple_repeat Simple_repeat 2 38 0 382 320 61 48 chr4 61140624 61140852 -141187495 - MIR SINE MIR -18 244 14 442 253 25 19 chr4 61140892 61141054 -141187293 - LTR67 LTR ERVL -19 538 376 502 283 21 7 chr4 61141246 61141391 -141186956 - MIR SINE MIR -52 210 64 739 346 100 34 chr4 61141652 61142395 -141185952 - ERVL LTR ERVL -2361 3403 2612 2046 133 14 0 chr4 61142448 61142742 -141185605 + AluSx SINE Alu 1 298 -14 22 80 0 0 chr4 61143600 61143650 -141184697 + AT_rich Low_complexity Low_complexity 1 50 0 349 274 89 36 chr4 61143862 61144030 -141184317 - MIR SINE MIR 0 262 86 189 309 0 36 chr4 61146930 61146985 -141181362 + L2 LINE L2 3193 3245 -27 208 324 14 14 chr4 61147623 61147697 -141180650 + L2 LINE L2 3240 3313 0 1730 105 54 79 chr4 61148208 61148523 -141179824 + AluSx SINE Alu 1 307 -5 955 186 6 0 chr4 61149560 61149732 -141178615 + MER2 DNA MER2_type 1 173 -172 29 0 0 0 chr4 61150866 61150895 -141177452 + AT_rich Low_complexity Low_complexity 1 29 0 1938 136 0 0 chr4 61151058 61151338 -141177009 + AluJb SINE Alu 1 280 -32 183 42 0 0 chr4 61151338 61151362 -141176985 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 216 97 0 0 chr4 61151369 61151400 -141176947 + (GGGTG)n Simple_repeat Simple_repeat 3 33 0 454 327 51 0 chr4 61152185 61152342 -141176005 - MIR3 SINE MIR -29 179 14 617 218 8 8 chr4 61152455 61152588 -141175759 - FLAM_A SINE Alu 0 133 1 1674 161 51 0 chr4 61153363 61153637 -141174710 - AluJb SINE Alu -24 288 1 653 268 125 36 chr4 61154071 61154295 -141174052 + MIR SINE MIR 3 246 -16 192 97 0 0 chr4 61154299 61154330 -141174017 + (CAT)n Simple_repeat Simple_repeat 2 32 0 280 336 82 0 chr4 61154373 61154483 -141173864 - L2 LINE L2 -5 3267 3149 467 60 0 0 chr4 61155326 61155393 -141172954 - L1PA4 LINE L1 0 6155 6089 335 335 110 12 chr4 61156572 61156817 -141171530 + L2 LINE L2 526 794 -2520 268 304 264 8 chr4 61157090 61157215 -141171132 + MER91A DNA MER1_type 14 170 -26 816 328 58 39 chr4 61157342 61157443 -141170904 + L2 LINE L2 1962 2060 -1254 397 35 35 0 chr4 61157443 61157500 -141170847 - L1PA4 LINE L1 0 6155 6097 816 328 58 39 chr4 61157500 61158017 -141170330 + L2 LINE L2 2060 2592 -722 191 352 56 21 chr4 61158107 61158144 -141170203 + L2 LINE L2 2819 2853 -460 2319 95 7 0 chr4 61158144 61158439 -141169908 - AluSx SINE Alu -15 297 1 191 352 56 21 chr4 61158439 61158543 -141169804 + L2 LINE L2 2853 2965 -348 2560 176 33 50 chr4 61159231 61159753 -141168594 + MLT2B2 LTR ERVL 1 513 -2 565 305 20 0 chr4 61161367 61161518 -141166829 - MIR SINE MIR -51 211 58 313 253 25 0 chr4 61163095 61163174 -141165173 + MER103 DNA DNA 5 85 -81 225 65 0 0 chr4 61163415 61163446 -141164901 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 220 286 12 24 chr4 61163517 61163564 -141164783 + (TA)n Simple_repeat Simple_repeat 2 49 -35 1930 129 70 20 chr4 61163564 61163921 -141164426 + THE1C LTR MaLR 1 375 0 220 286 12 24 chr4 61163921 61163957 -141164390 + (TA)n Simple_repeat Simple_repeat 49 84 0 492 219 0 9 chr4 61164679 61164784 -141163563 + U13 snRNA snRNA 1 104 0 596 254 42 50 chr4 61167255 61167495 -141160852 + MLT1L LTR MaLR 370 607 -8 26 0 0 0 chr4 61168584 61168610 -141159737 + AT_rich Low_complexity Low_complexity 1 26 0 615 342 66 39 chr4 61169579 61170087 -141158260 - L2 LINE L2 -8 3305 2764 2229 115 0 3 chr4 61170087 61170399 -141157948 - AluSx SINE Alu -1 311 1 615 342 66 39 chr4 61170399 61170593 -141157754 - L2 LINE L2 -549 2764 2577 391 288 135 36 chr4 61173346 61173679 -141154668 - L1MC4a LINE L1 -1879 5929 5564 2505 143 15 72 chr4 61174118 61174663 -141153684 + L1MA9 LINE L1 5568 6081 -231 401 178 25 34 chr4 61174663 61174774 -141153573 + L1MA7 LINE L1 6167 6283 -8 1811 129 71 63 chr4 61175104 61175242 -141153105 - L1MA6 LINE L1 -35 6265 6130 2074 128 0 0 chr4 61175242 61175553 -141152794 - AluSx SINE Alu 0 311 1 1811 129 71 63 chr4 61175553 61175793 -141152554 - L1MA6 LINE L1 -170 6130 5883 2146 162 57 33 chr4 61175859 61176279 -141152068 + MSTB1 LTR MaLR 3 432 0 582 339 87 37 chr4 61176703 61177025 -141151322 - L2 LINE L2 0 3272 2935 469 28 113 7 chr4 61177802 61177944 -141150403 + (TA)n Simple_repeat Simple_repeat 2 158 0 38 22 0 0 chr4 61177957 61178002 -141150345 + AT_rich Low_complexity Low_complexity 1 45 0 277 303 82 12 chr4 61179075 61179237 -141149110 + MIR SINE MIR 6 176 -62 1922 108 42 66 chr4 61179240 61179572 -141148775 + THE1C LTR MaLR 4 327 -48 2258 113 48 17 chr4 61179572 61179925 -141148422 + THE1B LTR MaLR 1 364 0 1922 108 42 66 chr4 61179925 61179973 -141148374 + THE1C LTR MaLR 327 375 0 258 156 266 0 chr4 61179973 61180037 -141148310 + MIR SINE MIR 171 251 -11 289 283 144 29 chr4 61180282 61180490 -141147857 - MIR SINE MIR -6 256 17 281 200 46 0 chr4 61182028 61182093 -141146254 - L2 LINE L2 0 3272 3205 489 308 65 31 chr4 61182535 61182860 -141145487 + MER102b DNA MER1_type 2 337 -4 353 283 71 18 chr4 61183487 61183600 -141144747 + MIR3 SINE MIR 81 199 -9 14930 102 134 55 chr4 61183770 61185487 -141142860 + L1PA7 LINE L1 12 1592 -4562 3029 53 0 0 chr4 61185487 61185865 -141142482 + L1PA5 LINE L1 5770 6147 -7 14930 102 134 55 chr4 61185865 61189708 -141138639 + L1PA7 LINE L1 1592 6150 -4 645 97 0 19 chr4 61189697 61189800 -141138547 + L1PB2 LINE L1 5767 5867 -284 * 282 60 60 0 chr4 61189802 61189852 -141138495 - AluSc SINE Alu 0 299 247 690 87 0 0 chr4 61189859 61189963 -141138384 + L1PB2 LINE L1 5870 5973 -178 771 105 0 32 chr4 61189963 61190087 -141138260 + AluSq/x SINE Alu 1 120 -193 546 339 31 31 chr4 61240111 61240397 -141087950 + L2 LINE L2 3028 3313 0 2129 130 0 3 chr4 61240542 61240849 -141087498 - AluSx SINE Alu -6 306 1 22 56 0 0 chr4 61240935 61240971 -141087376 + AT_rich Low_complexity Low_complexity 1 36 0 8567 35 18 1 chr4 61241193 61242511 -141085836 + L1P2 LINE L1 4253 5591 -563 1674 59 5 32 chr4 61242612 61242832 -141085515 - AluSp SINE Alu -99 214 1 2367 84 7 0 chr4 61243376 61243673 -141084674 - AluSg SINE Alu -11 299 1 1082 149 6 17 chr4 61243736 61243911 -141084436 - AluJo SINE Alu -20 292 120 279 197 0 0 chr4 61243935 61244001 -141084346 - Alu SINE Alu 0 302 237 1484 116 0 0 chr4 61244101 61244317 -141084030 - L1P LINE L1 -5920 226 11 282 156 0 0 chr4 61244322 61244367 -141083980 + Charlie1 DNA MER1_type 2703 2747 -14 1862 210 5 0 chr4 61244649 61245058 -141083289 - L1 LINE L1 -1063 5083 4673 4908 135 22 31 chr4 61245058 61245295 -141083052 + L1PA16 LINE L1 5122 5360 -806 2096 120 14 10 chr4 61245295 61245586 -141082761 + AluSc SINE Alu 1 292 -17 4908 135 22 31 chr4 61245586 61246020 -141082327 + L1PA16 LINE L1 5360 5784 -382 2000 100 0 4 chr4 61246020 61246279 -141082068 + AluSg SINE Alu 40 297 -13 4908 135 22 31 chr4 61246279 61246648 -141081699 + L1PA16 LINE L1 5784 6155 -11 21 0 0 31 chr4 61246648 61246664 -141081683 + AT_rich Low_complexity Low_complexity 1 16 -15 1877 114 0 63 chr4 61246664 61246981 -141081366 + AluY SINE Alu 15 311 0 21 0 0 31 chr4 61246981 61246996 -141081351 + AT_rich Low_complexity Low_complexity 16 31 0 198 143 0 0 chr4 61248476 61248511 -141079836 + (TG)n Simple_repeat Simple_repeat 2 36 0 2216 89 18 0 chr4 61248661 61248942 -141079405 + AluSg SINE Alu 13 298 -12 249 286 63 32 chr4 61249866 61249992 -141078355 + L2 LINE L2 2549 2678 -636 180 77 0 0 chr4 61250004 61250030 -141078317 + (TC)n Simple_repeat Simple_repeat 1 26 0 201 108 0 0 chr4 61250047 61250084 -141078263 + (CA)n Simple_repeat Simple_repeat 1 37 0 218 211 0 19 chr4 61250095 61250147 -141078200 + L2 LINE L2 2667 2717 -597 993 311 109 30 chr4 61251027 61251363 -141076984 + MLT1G LTR MaLR 1 398 -192 769 259 6 0 chr4 61251363 61251537 -141076810 + MER96 DNA MER1_type 1 175 0 993 311 109 30 chr4 61251537 61251741 -141076606 + MLT1G LTR MaLR 398 584 -6 265 196 0 0 chr4 61252591 61252642 -141075705 + L2 LINE L2 3256 3306 -7 955 196 9 47 chr4 61252664 61252878 -141075469 - MER58A DNA MER1_type 0 224 19 382 350 38 13 chr4 61252887 61253044 -141075303 + MIR SINE MIR 31 191 -71 470 181 12 0 chr4 61253121 61253204 -141075143 + MER58A DNA MER1_type 19 102 -5 342 184 0 0 chr4 61253204 61253280 -141075067 + (TA)n Simple_repeat Simple_repeat 2 77 0 1918 157 3 13 chr4 61253859 61254172 -141074175 - AluJo SINE Alu -2 310 1 28 0 0 0 chr4 61254218 61254246 -141074101 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr4 61254318 61254349 -141073998 + AT_rich Low_complexity Low_complexity 1 31 0 258 32 0 0 chr4 61254771 61254802 -141073545 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 33 0 0 0 chr4 61255516 61255549 -141072798 + AT_rich Low_complexity Low_complexity 1 33 0 358 235 20 29 chr4 61256871 61256973 -141071374 + MIR SINE MIR 66 166 -96 249 232 60 66 chr4 61257331 61257482 -141070865 - L1ME3 LINE L1 -216 5946 5797 247 333 117 75 chr4 61258247 61258632 -141069715 + L2 LINE L2 2872 3272 0 554 214 169 7 chr4 61258684 61258838 -141069509 + MER5A DNA MER1_type 4 182 -7 1119 193 71 27 chr4 61259001 61259042 -141069305 + MER58B DNA MER1_type 26 64 -2356 2571 204 137 16 chr4 61259042 61259779 -141068568 + LTR1B LTR ERV1 1 826 0 1119 193 71 27 chr4 61259779 61260033 -141068314 + MER58B DNA MER1_type 64 334 -7 907 226 0 0 chr4 61260137 61260301 -141068046 - FRAM SINE Alu -2 164 1 1235 112 16 102 chr4 61261998 61262248 -141066099 - L1MA4 LINE L1 0 6300 6081 2244 121 0 0 chr4 61262248 61262554 -141065793 - AluJo SINE Alu -6 306 1 1235 112 16 102 chr4 61262554 61262616 -141065731 - L1MA4 LINE L1 -219 6081 6015 9122 24 1 0 chr4 61262620 61264473 -141063874 - L1PA2 LINE L1 0 6155 4302 4751 31 33 0 chr4 61264473 61265086 -141063261 + L1PA2 LINE L1 3658 4290 -1856 200 282 65 81 chr4 61265772 61265896 -141062451 - MIR SINE MIR -139 123 2 1133 207 0 5 chr4 61265913 61266126 -141062221 - AluJb SINE Alu -15 297 86 23 40 0 0 chr4 61267127 61267152 -141061195 + AT_rich Low_complexity Low_complexity 1 25 0 1057 184 5 10 chr4 61267758 61267965 -141060382 - MER2 DNA MER2_type -139 206 1 183 343 0 0 chr4 61268478 61268548 -141059799 - L2 LINE L2 -19 3294 3225 1670 208 17 37 chr4 61268560 61268964 -141059383 - MSTD LTR MaLR 0 396 1 2120 144 3 0 chr4 61270037 61270349 -141057998 - AluSq SINE Alu 0 313 1 252 149 0 0 chr4 61270983 61271030 -141057317 + (TTTTC)n Simple_repeat Simple_repeat 4 50 0 242 306 0 14 chr4 61271208 61271280 -141057067 + L2 LINE L2 2335 2405 -909 2395 120 28 8 chr4 61273173 61273530 -141054817 - THE1B LTR MaLR 0 364 1 462 333 118 36 chr4 61273920 61274370 -141053977 + L2 LINE L2 1801 2287 -1027 200 288 188 41 chr4 61275046 61275498 -141052849 + L2 LINE L2 2291 2884 -388 370 304 107 9 chr4 61275584 61275696 -141052651 + L2 LINE L2 3150 3272 0 532 238 73 0 chr4 61278050 61278201 -141050146 - L1MC4 LINE L1 -1482 6560 6399 1601 179 45 34 chr4 61278416 61278797 -141049550 + L1MD3 LINE L1 7610 7994 -1 294 274 94 17 chr4 61279040 61279157 -141049190 + MIR SINE MIR 88 213 -49 212 330 85 0 chr4 61279167 61279261 -141049086 + L2 LINE L2 3169 3270 -2 222 326 11 11 chr4 61279834 61279926 -141048421 + MIR SINE MIR 170 261 -1 180 77 0 0 chr4 61281624 61281650 -141046697 + (GGAGAA)n Simple_repeat Simple_repeat 1 26 0 1600 123 31 0 chr4 61282050 61282311 -141046036 - L1PA14 LINE L1 -2 6159 5891 7550 30 0 0 chr4 61282319 61283684 -141044663 - L1PA4 LINE L1 -3 6152 4787 1141 229 138 29 chr4 61283696 61284110 -141044237 + MLT1D LTR MaLR 40 498 -7 348 258 86 69 chr4 61285921 61286154 -141042193 + MIR SINE MIR 22 258 -4 195 137 274 0 chr4 61288055 61288106 -141040241 + L2 LINE L2 3249 3313 0 431 98 24 0 chr4 61288572 61288654 -141039693 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 216 97 0 0 chr4 61288861 61288892 -141039455 + (TTCTCC)n Simple_repeat Simple_repeat 1 31 0 182 333 65 32 chr4 61288959 61289052 -141039295 - L2 LINE L2 -26 3246 3151 1997 133 21 7 chr4 61290198 61290484 -141037863 + AluSx SINE Alu 1 290 -22 286 125 14 14 chr4 61290492 61290564 -141037783 + (TA)n Simple_repeat Simple_repeat 1 72 0 210 373 100 0 chr4 61290817 61290927 -141037420 - L2 LINE L2 -401 2913 2793 222 312 116 14 chr4 61290975 61291113 -141037234 + MIR SINE MIR 13 164 -98 210 128 0 0 chr4 61291634 61291673 -141036674 + (T)n Simple_repeat Simple_repeat 1 39 0 1056 306 94 31 chr4 61293391 61293944 -141034403 - MLT1K LTR MaLR 0 588 1 23 0 0 0 chr4 61294028 61294051 -141034296 + AT_rich Low_complexity Low_complexity 1 23 0 210 329 51 25 chr4 61294550 61294629 -141033718 - MER5A DNA MER1_type -88 101 21 211 311 142 20 chr4 61294953 61295101 -141033246 + MIR SINE MIR 28 193 -69 1890 125 69 2 chr4 61295301 61295671 -141032676 + LTR12 LTR ERV1 1 2219 -219 737 156 0 7 chr4 61296024 61296159 -141032188 - L1MB2 LINE L1 -7 6164 6031 2341 175 20 11 chr4 61296165 61296616 -141031731 + LOR1b LTR ERV1 7 461 0 1400 182 15 0 chr4 61296616 61296880 -141031467 - L1MB3 LINE L1 -149 6034 5767 516 253 75 23 chr4 61297965 61298139 -141030208 + MIR SINE MIR 16 198 -64 209 318 16 0 chr4 61299434 61299497 -141028850 + MIR SINE MIR 52 115 -147 245 194 132 78 chr4 61299556 61299685 -141028662 + MLT1H LTR MaLR 66 201 -348 515 246 87 11 chr4 61299725 61299908 -141028439 + MLT1H LTR MaLR 314 510 -39 279 318 45 0 chr4 61299935 61300045 -141028302 + MIR SINE MIR 131 245 -17 203 217 261 11 chr4 61300532 61300624 -141027723 - L2 LINE L2 0 3313 3199 231 207 35 0 chr4 61300942 61301000 -141027347 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 260 290 0 43 chr4 61301025 61301094 -141027253 - L2 LINE L2 -85 3187 3122 1842 174 20 50 chr4 61301567 61301969 -141026378 - MLT1B LTR MaLR 0 390 1 2208 115 3 0 chr4 61302367 61302663 -141025684 - AluSg SINE Alu -13 297 1 23 0 0 0 chr4 61303391 61303414 -141024933 + AT_rich Low_complexity Low_complexity 1 23 0 211 337 0 12 chr4 61303695 61303781 -141024566 - L2 LINE L2 -2 3270 3186 1393 229 22 38 chr4 61303829 61304200 -141024147 + MLT1A1 LTR MaLR 1 365 0 2320 109 0 0 chr4 61304339 61304650 -141023697 + AluY SINE Alu 1 311 0 478 359 101 17 chr4 61304897 61305626 -141022721 + L2 LINE L2 2518 3313 0 270 0 0 0 chr4 61306110 61306140 -141022207 + (TG)n Simple_repeat Simple_repeat 2 31 0 1172 248 81 33 chr4 61306452 61306522 -141021825 - MLT1G1 LTR MaLR -39 516 451 2476 154 41 2 chr4 61306522 61306938 -141021409 - MSTB1 LTR MaLR 0 432 1 1172 248 81 33 chr4 61306938 61307386 -141020961 - MLT1G1 LTR MaLR -104 451 1 297 307 33 40 chr4 61307784 61307934 -141020413 + MIR3 SINE MIR 43 191 -17 608 289 78 9 chr4 61308357 61308575 -141019772 - MIR SINE MIR -26 236 4 181 246 108 31 chr4 61310012 61310077 -141018270 - L2 LINE L2 -44 3228 3159 2087 137 13 26 chr4 61310793 61311173 -141017174 + THE1C LTR MaLR 1 375 0 10479 116 12 29 chr4 61311173 61312780 -141015567 + THE1C-int LTR MaLR 1 1580 0 1910 131 16 48 chr4 61312796 61313169 -141015178 + THE1C LTR MaLR 15 375 0 27 29 0 0 chr4 61313617 61313651 -141014696 + AT_rich Low_complexity Low_complexity 1 34 0 185 289 0 0 chr4 61315217 61315269 -141013078 - MIR3 SINE MIR -4 204 153 404 238 42 62 chr4 61315361 61315501 -141012846 + MER112 DNA MER1_type 72 208 -52 631 253 5 54 chr4 61315501 61315687 -141012660 - MER45A DNA AcHobo -1 177 1 404 238 42 62 chr4 61315687 61315739 -141012608 + MER112 DNA MER1_type 208 260 0 266 284 158 24 chr4 61315742 61315869 -141012478 - MIR3 SINE MIR -57 151 8 2233 126 0 3 chr4 61315963 61316264 -141012083 - AluSx SINE Alu -12 300 1 1766 190 3 3 chr4 61316787 61317082 -141011265 + AluJb SINE Alu 1 295 -17 180 0 0 0 chr4 61317498 61317518 -141010829 + (T)n Simple_repeat Simple_repeat 1 20 0 404 216 22 37 chr4 61318666 61318800 -141009547 + MER103 DNA DNA 26 157 -9 496 308 30 46 chr4 61319424 61319661 -141008686 - MIR SINE MIR -18 244 12 11474 210 27 11 chr4 61320094 61323863 -141004484 - L1PA16 LINE L1 -49 6820 3111 180 0 0 0 chr4 61323863 61323883 -141004464 + (TTA)n Simple_repeat Simple_repeat 2 21 0 11474 210 27 11 chr4 61323883 61324156 -141004191 - L1PA16 LINE L1 -3758 3111 2844 333 0 0 0 chr4 61324156 61324193 -141004154 + (TG)n Simple_repeat Simple_repeat 2 38 0 11474 210 27 11 chr4 61324193 61325963 -141002384 - L1PA16 LINE L1 -4025 2844 928 953 189 282 4 chr4 61325963 61326190 -141002157 - L1PA16 LINE L1 -6190 659 370 215 377 136 16 chr4 61326511 61326768 -141001579 + L2 LINE L2 2552 2839 -475 219 292 62 42 chr4 61327118 61327214 -141001133 + L2 LINE L2 3214 3311 -2 220 415 9 0 chr4 61327391 61327497 -141000850 + L2 LINE L2 3203 3309 -4 224 228 120 43 chr4 61327552 61327644 -141000703 - L2 LINE L2 -9 3304 3206 9885 162 43 3 chr4 61328384 61333155 -140995192 + L1PBa LINE L1 1 5138 -1724 26819 91 13 43 chr4 61333160 61336235 -140992112 + L1P LINE L1 14 3180 -2966 2696 36 0 0 chr4 61336235 61336542 -140991805 + AluY SINE Alu 1 307 -4 26819 91 13 43 chr4 61336542 61336826 -140991521 + L1P LINE L1 3180 3471 -2675 3705 102 179 7 chr4 61336826 61337413 -140990934 - LTR12 LTR ERV1 0 688 1 26819 91 13 43 chr4 61337413 61338394 -140989953 + L1P LINE L1 3471 4224 -1922 377 247 25 0 chr4 61338410 61338491 -140989856 - MER5A DNA MER1_type -106 83 1 839 285 50 26 chr4 61338752 61339054 -140989293 - L2 LINE L2 0 3313 3005 2234 92 3 3 chr4 61339400 61339692 -140988655 + AluY SINE Alu 1 292 -19 302 308 82 79 chr4 61339711 61339990 -140988357 - L3 LINE CR1 -207 1370 1091 2107 127 3 0 chr4 61340079 61340378 -140987969 - AluSq SINE Alu -13 300 1 837 276 41 12 chr4 61340505 61340748 -140987599 - MIR SINE MIR -11 251 2 264 383 13 13 chr4 61340768 61340922 -140987425 - L3 LINE CR1 -742 835 682 387 0 0 0 chr4 61340944 61340987 -140987360 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 21 0 0 0 chr4 61341125 61341146 -140987201 + AT_rich Low_complexity Low_complexity 1 21 0 232 306 71 12 chr4 61341776 61341808 -140986539 + L2 LINE L2 3182 3211 -61 886 225 38 19 chr4 61341808 61342021 -140986326 - MER20 DNA MER1_type 0 219 3 232 306 71 12 chr4 61342021 61342073 -140986274 + L2 LINE L2 3211 3271 -1 180 315 99 9 chr4 61346889 61347000 -140981347 + L2 LINE L2 2698 2818 -496 210 304 193 22 chr4 61347266 61347401 -140980946 - MIR SINE MIR -2 260 103 239 367 75 8 chr4 61347493 61347613 -140980734 + L2 LINE L2 3184 3311 -2 190 276 10 51 chr4 61347692 61347790 -140980557 + MIR SINE MIR 125 218 -44 383 262 37 9 chr4 61348088 61348195 -140980152 - L2 LINE L2 -1 3271 3162 6707 121 168 81 chr4 61348266 61349828 -140978519 - pTR5 LTR ERV1 0 2438 741 552 152 0 0 chr4 61349848 61349940 -140978407 - pTR5 LTR ERV1 -1606 832 741 368 270 112 86 chr4 61350164 61350397 -140977950 + LTR16C LTR ERVL 114 352 -139 235 252 75 37 chr4 61350474 61350581 -140977766 - REP3 LTR ERV -47 515 405 290 198 66 74 chr4 61350967 61351088 -140977259 + LTR16C LTR ERVL 372 491 0 2123 136 13 0 chr4 61351118 61351426 -140976921 + AluSx SINE Alu 1 312 0 831 315 16 4 chr4 61352199 61352456 -140975891 - MIR SINE MIR 0 262 3 584 318 14 9 chr4 61353688 61353902 -140974445 - LTR67 LTR ERVL -14 543 329 494 250 21 114 chr4 61353949 61354185 -140974162 - LTR67 LTR ERVL -331 226 13 2189 117 3 0 chr4 61354439 61354729 -140973618 - AluSg SINE Alu -19 291 1 379 325 83 18 chr4 61355148 61355376 -140972971 + MIR SINE MIR 20 262 0 204 40 0 0 chr4 61355592 61355617 -140972730 + (CA)n Simple_repeat Simple_repeat 2 26 0 282 87 0 0 chr4 61355928 61355974 -140972373 + (GA)n Simple_repeat Simple_repeat 1 46 0 306 328 68 28 chr4 61356034 61356211 -140972136 + MIR SINE MIR 70 253 -9 24 53 0 0 chr4 61357980 61358018 -140970329 + AT_rich Low_complexity Low_complexity 1 38 0 1611 198 8 55 chr4 61358204 61358587 -140969760 - MLT1A1 LTR MaLR 0 365 1 298 295 62 0 chr4 61358618 61358730 -140969617 + L2 LINE L2 2159 2277 -1037 231 274 48 0 chr4 61359224 61359286 -140969061 + Charlie7 DNA MER1_type 2548 2612 0 219 348 174 9 chr4 61359444 61359674 -140968673 + L2 LINE L2 2817 3084 -188 1266 206 105 63 chr4 61360849 61361248 -140967099 - L1MD2 LINE L1 -226 6133 5718 219 182 23 0 chr4 61361409 61361453 -140966894 + T-rich Low_complexity Low_complexity 2 46 0 25 31 0 0 chr4 61361715 61361747 -140966600 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr4 61362011 61362033 -140966314 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 24707 158 12 16 chr4 61362039 61363134 -140965213 - L1PA10 LINE L1 -5 7601 6503 2229 105 0 0 chr4 61363134 61363428 -140964919 + AluY SINE Alu 1 294 -17 24707 158 12 16 chr4 61363428 61367924 -140960423 - L1PA10 LINE L1 -1103 6503 1268 204 333 0 0 chr4 61367940 61367994 -140960353 + L2 LINE L2 3219 3272 0 304 319 28 30 chr4 61368186 61368374 -140959973 + MIR3 SINE MIR 3 192 -62 40 21 0 0 chr4 61369073 61369120 -140959227 + AT_rich Low_complexity Low_complexity 1 47 0 236 341 188 0 chr4 61370582 61370790 -140957557 + MIR SINE MIR 9 255 -7 320 336 0 9 chr4 61371018 61371128 -140957219 - HAL1b LINE L1 -999 349 241 293 73 0 0 chr4 61371133 61371174 -140957173 - MLT2D LTR ERVL 0 464 424 303 28 0 0 chr4 61371176 61371212 -140957135 + (TC)n Simple_repeat Simple_repeat 1 36 0 213 39 0 0 chr4 61371211 61371237 -140957110 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 1692 131 4 36 chr4 61371237 61371512 -140956835 - MLT2D LTR ERVL -142 272 7 1875 144 13 10 chr4 61371916 61372214 -140956133 - AluSp SINE Alu -14 299 1 28 61 0 0 chr4 61372238 61372287 -140956060 + AT_rich Low_complexity Low_complexity 1 49 0 2092 78 44 0 chr4 61372835 61373105 -140955242 + AluY SINE Alu 1 282 -29 269 61 0 41 chr4 61373113 61373162 -140955185 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 593 264 178 29 chr4 61373373 61373884 -140954463 + HAL1b LINE L1 664 1250 -98 22 70 0 0 chr4 61373908 61373951 -140954396 + AT_rich Low_complexity Low_complexity 1 43 0 220 271 0 0 chr4 61373951 61373999 -140954348 - MIR SINE MIR -64 144 97 7362 31 7 14 chr4 61374014 61375456 -140952891 + L1PA4 LINE L1 4720 6154 -1 28 48 0 0 chr4 61375518 61375560 -140952787 + AT_rich Low_complexity Low_complexity 1 42 0 6743 67 8 8 chr4 61375675 61377349 -140950998 + L1PA7 LINE L1 4456 6154 0 324 115 26 13 chr4 61377408 61377486 -140950861 + GA-rich Low_complexity Low_complexity 1 79 0 343 221 225 42 chr4 61378317 61378530 -140949817 - L1ME4a LINE L1 -6 6115 5864 25 0 0 0 chr4 61378787 61378812 -140949535 + AT_rich Low_complexity Low_complexity 1 25 0 2077 155 0 0 chr4 61379090 61379394 -140948953 + AluSx SINE Alu 1 304 -8 620 287 92 37 chr4 61379437 61379680 -140948667 - MIR SINE MIR -2 260 5 292 305 0 0 chr4 61380405 61380487 -140947860 + CT-rich Low_complexity Low_complexity 1 82 0 2020 148 137 8 chr4 61380680 61381059 -140947288 - MSTA LTR MaLR 0 428 1 316 306 19 19 chr4 61381268 61381376 -140946971 - MIR SINE MIR -143 119 12 1635 154 114 0 chr4 61381822 61382102 -140946245 + AluSx SINE Alu 1 312 0 1204 273 114 18 chr4 61382797 61383244 -140945103 + L2 LINE L2 2354 2843 -471 412 234 43 0 chr4 61383316 61383410 -140944937 + MIR SINE MIR 152 249 -13 245 412 18 0 chr4 61383473 61383587 -140944760 - MIR SINE MIR -60 148 33 10010 43 8 0 chr4 61386454 61388471 -140939876 - L1PA3 LINE L1 -1 6154 4127 20425 44 0 0 chr4 61388471 61391029 -140937318 + L1P LINE L1 1228 3784 -2362 2144 42 0 0 chr4 61391050 61391315 -140937032 - L1PA4 LINE L1 -3 6152 5888 485 294 59 7 chr4 61392417 61392570 -140935777 + MLT1J1 LTR MaLR 21 181 -265 294 351 32 7 chr4 61392645 61392799 -140935548 + MLT1J1 LTR MaLR 289 446 0 643 264 19 91 chr4 61392837 61393045 -140935302 + MIR SINE MIR 70 262 0 340 36 0 143 chr4 61393696 61393752 -140934595 - MLT2D LTR ERVL 0 515 367 1849 180 64 5 chr4 61393875 61394248 -140934099 - MLT2D LTR ERVL -19 395 1 436 268 103 69 chr4 61394287 61394548 -140933799 + Charlie8 DNA MER1_type 12 281 -2136 333 0 0 0 chr4 61395998 61396035 -140932312 + (TG)n Simple_repeat Simple_repeat 1 37 0 360 225 109 36 chr4 61396321 61396459 -140931888 - L1ME1 LINE L1 -17 6149 6002 2886 177 114 25 chr4 61396976 61397116 -140931231 + MER39 LTR ERV1 1 127 -580 2141 114 7 0 chr4 61397116 61397413 -140930934 + AluSq SINE Alu 1 299 -14 2886 177 114 25 chr4 61397413 61397921 -140930426 + MER39 LTR ERV1 127 707 0 1032 259 115 42 chr4 61399550 61400021 -140928326 - L2 LINE L2 -1 3312 2808 11126 213 14 14 chr4 61400121 61402573 -140925774 - L1 LINE L1 -1310 4836 2384 1277 49 25 0 chr4 61402573 61402736 -140925611 - L1PA5 LINE L1 -4 6150 5984 11126 213 14 14 chr4 61402736 61402945 -140925402 - L1 LINE L1 -3762 2384 2176 5726 114 8 31 chr4 61402950 61403329 -140925018 - L1PB1 LINE L1 -2 6149 5763 621 38 0 0 chr4 61403329 61403409 -140924938 + (TA)n Simple_repeat Simple_repeat 1 80 0 5726 114 8 31 chr4 61403409 61403986 -140924361 - L1PB1 LINE L1 -388 5763 5216 208 354 146 35 chr4 61404289 61404433 -140923914 + L2 LINE L2 3112 3271 -1 1300 256 21 65 chr4 61405055 61405535 -140922812 + LTR40b LTR ERVL 4 462 0 548 282 71 21 chr4 61405548 61405891 -140922456 + MLT1J2 LTR MaLR 45 427 -23 318 199 118 110 chr4 61406531 61406667 -140921680 - L2 LINE L2 0 3313 3177 1557 221 0 0 chr4 61406670 61406955 -140921392 + AluJb SINE Alu 7 291 -21 1618 281 291 8 chr4 61406963 61407873 -140920474 - L2 LINE L2 -608 2706 1539 253 269 129 21 chr4 61407920 61408013 -140920334 - L2 LINE L2 -185 3087 2985 367 359 113 32 chr4 61408208 61408256 -140920091 - L2 LINE L2 -527 2787 2744 1788 179 10 3 chr4 61408256 61408552 -140919795 - AluJb SINE Alu -14 298 1 367 359 113 32 chr4 61408552 61409105 -140919242 - L2 LINE L2 -570 2744 2137 23 0 0 0 chr4 61409607 61409630 -140918717 + AT_rich Low_complexity Low_complexity 1 23 0 5495 18 0 0 chr4 61409807 61410476 -140917871 - L1PA3 LINE L1 0 6155 5527 5689 36 3 0 chr4 61410476 61411191 -140917156 + L1P LINE L1 2951 3667 -2479 2361 55 3 22 chr4 61411661 61411972 -140916375 - AluY SINE Alu -6 305 1 3355 262 57 30 chr4 61412373 61413440 -140914907 - MER69B DNA AcHobo -52 1174 79 1090 253 146 32 chr4 61413585 61414023 -140914324 - MLT1D LTR MaLR -17 488 1 207 309 0 0 chr4 61414894 61414949 -140913398 - L2 LINE L2 0 3272 3218 374 334 97 61 chr4 61415050 61415379 -140912968 - L2 LINE L2 -5 3267 2927 2520 122 36 0 chr4 61417240 61417602 -140910745 - THE1C LTR MaLR 0 375 1 247 307 24 66 chr4 61417638 61417804 -140910543 - MIR SINE MIR -67 195 37 634 296 94 50 chr4 61418204 61418565 -140909782 + L2 LINE L2 2937 3313 0 388 270 78 60 chr4 61418607 61418810 -140909537 + L1ME3A LINE L1 4748 4946 -1200 426 20 0 0 chr4 61418810 61418861 -140909486 + (GA)n Simple_repeat Simple_repeat 2 52 0 1644 165 50 4 chr4 61418861 61419121 -140909226 - AluJb SINE Alu -34 278 7 388 270 78 60 chr4 61419121 61419464 -140908883 + L1ME3A LINE L1 4945 5305 -841 408 266 40 16 chr4 61419528 61419652 -140908695 + L1ME3A LINE L1 5403 5529 -633 42 36 0 0 chr4 61419701 61419757 -140908590 + AT_rich Low_complexity Low_complexity 1 56 0 341 371 20 20 chr4 61419816 61419967 -140908380 + MLT1I LTR MaLR 71 221 -188 225 294 15 0 chr4 61420084 61420152 -140908195 + MLT1I LTR MaLR 339 407 -2 336 309 92 35 chr4 61420154 61420436 -140907911 + L1ME3A LINE L1 5614 5911 -259 719 288 118 18 chr4 61421042 61421382 -140906965 - MLT1J2 LTR MaLR 0 450 77 1781 171 3 20 chr4 61421658 61421962 -140906385 - AluJo SINE Alu -12 300 2 293 410 40 6 chr4 61422157 61422330 -140906017 + MIR3 SINE MIR 3 181 -27 494 259 93 31 chr4 61422612 61422805 -140905542 + L2 LINE L2 3104 3308 -5 333 0 0 0 chr4 61424058 61424095 -140904252 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr4 61424660 61424681 -140903666 + AT_rich Low_complexity Low_complexity 1 21 0 254 367 188 0 chr4 61425601 61425819 -140902528 - MIR SINE MIR 0 262 4 623 275 138 9 chr4 61426447 61426665 -140901682 - MIR SINE MIR -2 260 15 400 294 108 1 chr4 61427811 61428057 -140900290 + MLT1G3 LTR MaLR 177 487 -43 348 24 0 0 chr4 61428537 61428578 -140899769 + (TA)n Simple_repeat Simple_repeat 2 42 0 7036 36 0 3 chr4 61428579 61429712 -140898635 - L1PA5 LINE L1 -11 6143 5015 225 369 0 0 chr4 61430036 61430120 -140898227 - MLT1-int LTR MaLR -869 502 419 333 322 63 83 chr4 61430443 61430806 -140897541 - MLT1H LTR MaLR -180 369 14 239 95 48 0 chr4 61432001 61432043 -140896304 + CT-rich Low_complexity Low_complexity 3 46 0 22 0 0 0 chr4 61432175 61432197 -140896150 + AT_rich Low_complexity Low_complexity 1 22 0 198 233 93 108 chr4 61432394 61432523 -140895824 + MIR SINE MIR 77 203 -59 194 0 39 0 chr4 61433013 61433039 -140895308 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 198 268 0 0 chr4 61433445 61433486 -140894861 - L2 LINE L2 -18 3254 3214 1064 269 44 44 chr4 61433688 61434215 -140894132 + L1MC2 LINE L1 4603 5129 -1017 4627 189 31 10 chr4 61434229 61435198 -140893149 + L1MC2 LINE L1 5297 6285 -59 23 33 0 0 chr4 61435211 61435241 -140893106 + AT_rich Low_complexity Low_complexity 1 30 0 489 161 35 0 chr4 61435271 61435358 -140892989 + L1MB8 LINE L1 5433 5522 -656 1066 277 67 12 chr4 61435371 61435700 -140892647 - MLT1A1 LTR MaLR 0 365 19 2740 198 22 17 chr4 61435718 61436356 -140891991 + L1MB8 LINE L1 5538 6178 0 234 305 0 0 chr4 61436361 61436443 -140891904 + L1M4 LINE L1 4662 4743 -1403 357 82 0 0 chr4 61436908 61436957 -140891390 + (CA)n Simple_repeat Simple_repeat 1 49 0 1126 227 108 36 chr4 61437493 61437534 -140890813 - MLT2B1 LTR ERVL 0 414 377 225 65 0 0 chr4 61437534 61437565 -140890782 + (TG)n Simple_repeat Simple_repeat 2 32 0 1126 227 108 36 chr4 61437565 61437908 -140890439 - MLT2B1 LTR ERVL -37 377 1 1795 149 11 0 chr4 61438412 61438681 -140889666 - AluSx SINE Alu -12 300 29 2542 123 26 17 chr4 61438694 61439116 -140889231 - MSTA LTR MaLR 0 428 3 2949 152 6 6 chr4 61441120 61441802 -140886545 - MER72 LTR ERV1 0 722 8 6154 171 48 73 chr4 61441810 61443292 -140885055 - MER72-int LTR ERV1 -1 6757 5313 708 231 0 0 chr4 61443370 61443500 -140884847 - MER4B-int LTR ERV1 -2092 2099 1970 1555 165 165 9 chr4 61443501 61443823 -140884524 - MSTA LTR MaLR -1 427 56 1775 156 18 42 chr4 61443830 61443952 -140884395 - MER4B-int LTR ERV1 -1876 4882 4759 1492 219 3 7 chr4 61443952 61444253 -140884094 - AluJo SINE Alu -10 302 3 1775 156 18 42 chr4 61444253 61444463 -140883884 - MER4B-int LTR ERV1 -1999 4759 4558 1106 149 44 48 chr4 61444457 61444749 -140883598 - MER4B-int LTR ERV1 -2767 3564 2685 * 239 280 0 0 chr4 61444752 61444840 -140883507 + G-rich Low_complexity Low_complexity 1 88 0 181 323 57 65 chr4 61445199 61445323 -140883024 + MIR3 SINE MIR 9 131 -77 27 0 0 0 chr4 61445565 61445592 -140882755 + AT_rich Low_complexity Low_complexity 1 27 0 235 296 0 37 chr4 61446851 61446932 -140881415 - L1ME LINE L1 -603 5559 5482 601 230 40 12 chr4 61446972 61447166 -140881181 - L1ME LINE L1 -694 5476 5274 745 280 41 10 chr4 61447204 61447611 -140880736 - L1M4 LINE L1 -925 5221 4791 743 325 124 30 chr4 61449543 61450011 -140878336 - LTR33 LTR ERVL -4 517 6 1770 302 89 65 chr4 61450634 61451176 -140877171 - ERVL LTR ERVL -699 5065 4537 366 23 0 0 chr4 61451176 61451219 -140877128 + (TG)n Simple_repeat Simple_repeat 2 44 0 1770 302 89 65 chr4 61451219 61451916 -140876431 - ERVL LTR ERVL -1227 4537 3797 576 287 145 52 chr4 61452431 61452908 -140875439 - LTR33 LTR ERVL 0 521 1 260 310 95 26 chr4 61453072 61453122 -140875225 + L2 LINE L2 3146 3191 -81 2473 144 34 42 chr4 61453122 61453593 -140874754 - MLT1C LTR MaLR 0 467 1 260 310 95 26 chr4 61453593 61453658 -140874689 + L2 LINE L2 3191 3269 -3 287 310 41 41 chr4 61454613 61454758 -140873589 - MIR SINE MIR -107 155 11 233 373 45 0 chr4 61454808 61454918 -140873429 + L2 LINE L2 2944 3058 -255 221 256 179 0 chr4 61455004 61455082 -140873265 + L2 LINE L2 3171 3262 -10 2359 188 29 11 chr4 61455798 61456244 -140872103 - MER65C LTR ERV1 -7 454 1 308 311 30 53 chr4 61456247 61456379 -140871968 - MER5A DNA MER1_type -52 137 9 25 0 0 0 chr4 61459371 61459396 -140868951 + AT_rich Low_complexity Low_complexity 1 25 0 494 305 17 17 chr4 61460481 61460658 -140867689 + L1ME1 LINE L1 5386 5562 -604 1217 196 39 35 chr4 61460695 61460955 -140867392 + AluJo SINE Alu 41 301 -11 965 224 94 13 chr4 61460986 61461285 -140867062 + L1ME1 LINE L1 5607 5929 -237 562 257 67 14 chr4 61461284 61461494 -140866853 - L1MEc LINE L1 -1756 4459 4239 * 1529 250 60 62 chr4 61461483 61462435 -140865912 - L1MEc LINE L1 -2613 3602 2653 200 211 18 0 chr4 61462486 61462543 -140865804 + (TG)n Simple_repeat Simple_repeat 2 59 0 3620 291 110 16 chr4 61462545 61462878 -140865469 - L1MEc LINE L1 -3934 2462 2162 207 0 0 0 chr4 61462878 61462901 -140865446 + (TA)n Simple_repeat Simple_repeat 2 24 0 3620 291 110 16 chr4 61462901 61463445 -140864902 - L1MEc LINE L1 -4234 2162 1671 282 29 0 0 chr4 61463445 61463480 -140864867 + (CA)n Simple_repeat Simple_repeat 2 36 0 3620 291 110 16 chr4 61463480 61464783 -140863564 - L1MEc LINE L1 -4725 1671 74 586 305 106 9 chr4 61464857 61465343 -140863004 - MLT1G LTR MaLR 0 555 8 264 204 37 0 chr4 61465368 61465422 -140862925 + LTR33A LTR ERVL 468 523 0 25 0 0 0 chr4 61466564 61466589 -140861758 + AT_rich Low_complexity Low_complexity 1 25 0 520 271 60 13 chr4 61466656 61466807 -140861540 + MLT1J2 LTR MaLR 20 177 -273 1819 215 35 33 chr4 61466822 61467278 -140861069 + MSTB2 LTR MaLR 1 457 0 731 301 109 65 chr4 61467297 61468160 -140860187 + ERVL LTR ERVL 850 1750 -4014 1217 236 59 20 chr4 61468320 61468785 -140859562 + MLT1E2 LTR MaLR 156 626 0 1735 332 71 49 chr4 61468856 61469707 -140858640 + ERVL LTR ERVL 3529 4415 -1349 5055 30 2 36 chr4 61469707 61470346 -140858001 - L1PA3 LINE L1 0 6155 5539 1735 332 71 49 chr4 61470346 61470676 -140857671 + ERVL LTR ERVL 4415 4736 -1028 260 247 0 52 chr4 61470969 61471046 -140857301 + MER53 DNA DNA 105 177 -12 * 360 278 0 0 chr4 61470978 61471068 -140857279 - MER53 DNA DNA -99 90 1 271 316 84 37 chr4 61471180 61471370 -140856977 + L2 LINE L2 2613 2811 -503 591 302 19 42 chr4 61471688 61471900 -140856447 - MIR SINE MIR -55 207 1 379 67 5 108 chr4 61472114 61472309 -140856038 + (TA)n Simple_repeat Simple_repeat 1 175 0 525 105 0 96 chr4 61472337 61472887 -140855460 + (TA)n Simple_repeat Simple_repeat 1 497 0 362 102 30 137 chr4 61472897 61473094 -140855253 + (TATATG)n Simple_repeat Simple_repeat 3 178 0 290 129 67 31 chr4 61473113 61473449 -140854898 + (TATATG)n Simple_repeat Simple_repeat 1 348 0 229 167 6 72 chr4 61473510 61473690 -140854657 + (TA)n Simple_repeat Simple_repeat 1 168 0 367 283 87 47 chr4 61473776 61474149 -140854198 - L1ME LINE L1 -597 5573 5174 21 0 0 0 chr4 61474176 61474197 -140854150 + AT_rich Low_complexity Low_complexity 1 21 0 381 290 10 0 chr4 61474209 61474309 -140854038 + L2 LINE L2 2658 2758 -556 240 238 36 0 chr4 61474349 61474433 -140853914 + L1M4 LINE L1 3899 3985 -2161 23 0 0 0 chr4 61474617 61474640 -140853707 + AT_rich Low_complexity Low_complexity 1 23 0 609 256 0 0 chr4 61474796 61474964 -140853383 + (TA)n Simple_repeat Simple_repeat 2 169 0 207 100 0 0 chr4 61475054 61475084 -140853263 + (CA)n Simple_repeat Simple_repeat 2 31 0 316 368 67 9 chr4 61475648 61475871 -140852476 - MIR SINE MIR -13 249 14 253 120 60 0 chr4 61476204 61476254 -140852093 - Charlie7 DNA MER1_type -2509 103 51 183 360 107 50 chr4 61476374 61476693 -140851654 + L2 LINE L2 2936 3272 0 197 184 0 0 chr4 61476840 61476878 -140851469 - MIR3 SINE MIR 0 208 171 266 356 79 23 chr4 61478670 61478847 -140849500 - MIR SINE MIR -27 235 49 1707 136 45 36 chr4 61479303 61479611 -140848736 + THE1B LTR MaLR 4 314 -50 1192 150 164 9 chr4 61479800 61479998 -140848349 + L1MA9 LINE L1 5945 6111 -189 333 0 0 0 chr4 61479998 61480035 -140848312 + (CA)n Simple_repeat Simple_repeat 1 37 0 1192 150 164 9 chr4 61480035 61480134 -140848213 + L1MA9 LINE L1 6111 6280 -20 316 285 161 53 chr4 61480982 61481343 -140847004 + L2 LINE L2 2912 3311 -2 2644 120 23 12 chr4 61482032 61482431 -140845916 + MER57B LTR ERV1 1 403 -31 233 315 185 20 chr4 61483394 61483540 -140844807 - MIR SINE MIR -10 252 83 186 43 0 0 chr4 61483553 61483576 -140844771 + (GA)n Simple_repeat Simple_repeat 2 24 0 1469 149 30 15 chr4 61484023 61484291 -140844056 - L1PA10 LINE L1 -4 6164 5893 282 339 46 9 chr4 61484896 61485005 -140843342 + L2 LINE L2 3157 3269 -3 398 351 8 15 chr4 61485118 61485252 -140843095 - L2 LINE L2 0 3313 3181 1702 172 0 46 chr4 61486425 61486829 -140841518 - AluJo SINE Alu 0 389 1 2143 170 30 0 chr4 61490023 61490387 -140837960 - MLT1B LTR MaLR 0 390 16 1473 256 17 60 chr4 61490685 61491149 -140837198 + MLT2B1 LTR ERVL 3 446 -74 441 0 0 0 chr4 61491208 61491257 -140837090 + (TA)n Simple_repeat Simple_repeat 1 49 0 26 0 0 0 chr4 61491416 61491442 -140836905 + AT_rich Low_complexity Low_complexity 1 26 0 771 21 27 69 chr4 61491442 61491630 -140836717 + (TA)n Simple_repeat Simple_repeat 1 180 0 375 185 6 57 chr4 61491650 61491807 -140836540 + (CATATA)n Simple_repeat Simple_repeat 1 149 0 247 233 35 47 chr4 61491844 61491930 -140836417 + L1MC4 LINE L1 6614 6698 -1344 227 200 0 15 chr4 61491932 61491997 -140836350 + (TA)n Simple_repeat Simple_repeat 1 64 0 208 216 0 0 chr4 61492065 61492102 -140836245 + (TG)n Simple_repeat Simple_repeat 2 38 0 226 205 0 0 chr4 61492107 61492146 -140836201 + Tigger3(Golem) DNA MER2_type 40 78 -2951 497 259 17 0 chr4 61492150 61492266 -140836081 + FLAM_A SINE Alu 6 123 -19 392 234 0 0 chr4 61492273 61492350 -140835997 + Tigger3(Golem) DNA MER2_type 66 142 -2887 * 1506 123 60 0 chr4 61492347 61492582 -140835765 + Tigger3(Golem) DNA MER2_type 2781 3029 0 307 136 0 0 chr4 61492582 61492624 -140835723 + MLT2C1 LTR ERVL 356 397 0 235 385 0 0 chr4 61493444 61493522 -140834825 - L2 LINE L2 -9 3263 3186 2949 127 19 58 chr4 61495211 61495795 -140832552 + L1MA7 LINE L1 5731 6291 0 311 354 77 0 chr4 61495797 61495927 -140832420 + L1ME LINE L1 498 637 -5433 1989 156 42 17 chr4 61495927 61496285 -140832062 + MLT1B LTR MaLR 24 390 0 2245 242 65 30 chr4 61496288 61497031 -140831316 + L1ME1 LINE L1 4570 5286 -880 2374 84 3 0 chr4 61497031 61497327 -140831020 - AluSp SINE Alu -16 297 1 2245 242 65 30 chr4 61497327 61498015 -140830332 + L1ME1 LINE L1 5286 6059 -107 219 186 0 0 chr4 61498042 61498085 -140830262 + (TA)n Simple_repeat Simple_repeat 1 43 0 727 183 36 0 chr4 61498111 61498248 -140830099 + MER82 DNA MER2_type 2 143 -510 1096 185 0 92 chr4 61498725 61499006 -140829341 + MER82 DNA MER2_type 212 466 -187 270 0 0 0 chr4 61499194 61499224 -140829123 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 700 306 30 4 chr4 61500314 61500546 -140827801 + MIR SINE MIR 20 257 -5 191 392 72 7 chr4 61501486 61501639 -140826708 - L2 LINE L2 -3 3269 3107 593 287 42 18 chr4 61501887 61502054 -140826293 + MLT2E LTR ERVL 19 189 -439 2124 201 74 56 chr4 61502061 61502632 -140825715 + MER92B LTR ERV1 1 585 -51 1094 148 190 164 chr4 61502632 61503133 -140825214 - MER67D LTR ERV1 0 514 1 2124 201 74 56 chr4 61503133 61503184 -140825163 + MER92B LTR ERV1 585 634 -2 375 313 81 18 chr4 61503184 61503536 -140824811 + MLT2F LTR ERVL 262 657 -6 379 311 77 22 chr4 61504423 61504645 -140823702 + ERVL LTR ERVL 5198 5431 -333 257 333 36 67 chr4 61505467 61505534 -140822813 - L2 LINE L2 -220 3052 2984 1686 197 47 45 chr4 61505534 61506000 -140822347 - MLT1C LTR MaLR 0 467 1 257 333 36 67 chr4 61506000 61506157 -140822190 - L2 LINE L2 -288 2984 2835 455 274 39 0 chr4 61506307 61506460 -140821887 - L1M4 LINE L1 -2432 3714 3556 3597 92 10 2 chr4 61506467 61506967 -140821380 + L1PA10 LINE L1 5548 6051 -117 288 65 0 0 chr4 61506967 61507013 -140821334 + L1PA11 LINE L1 6129 6174 0 944 277 37 33 chr4 61507019 61507477 -140820870 - L1M4 LINE L1 -3453 2693 2234 1351 221 27 3 chr4 61507482 61507813 -140820534 - L1MA9 LINE L1 -38 6274 5936 * 6784 33 5 5 chr4 61507807 61508622 -140819725 - L1PA5 LINE L1 0 6154 5340 5954 60 1 1 chr4 61508624 61510318 -140818029 + L1P LINE L1 1393 3177 -2969 2841 200 30 20 chr4 61510320 61511385 -140816962 - L1MA9 LINE L1 -371 5941 4870 21 0 0 0 chr4 61511957 61511978 -140816369 + AT_rich Low_complexity Low_complexity 1 21 0 1265 321 61 31 chr4 61512724 61513298 -140815049 - MLT1E LTR MaLR -2 591 1 4022 115 63 3 chr4 61513446 61514113 -140814234 + L1MA2 LINE L1 5598 6304 0 217 50 25 25 chr4 61515707 61515747 -140812600 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1879 140 46 38 chr4 61515755 61516126 -140812221 - THE1C LTR MaLR 0 375 2 244 359 133 33 chr4 61516139 61516440 -140811907 - L2 LINE L2 -2439 875 545 32775 38 1 4 chr4 61516994 61521867 -140806480 - L1PA3 LINE L1 -4 6151 1292 9677 71 3 9 chr4 61521867 61523133 -140805214 + L1PA3 LINE L1 8 1266 -4880 1382 245 24 19 chr4 61524925 61525297 -140803050 + MLT1A2 LTR MaLR 1 374 0 954 295 94 26 chr4 61525571 61525995 -140802352 - L2 LINE L2 -20 3293 2841 180 0 0 0 chr4 61526085 61526105 -140802242 + (CAACT)n Simple_repeat Simple_repeat 4 23 0 1543 131 34 11 chr4 61527446 61527713 -140800634 - L1PB4 LINE L1 -268 5888 5616 1501 165 0 74 chr4 61528404 61528701 -140799646 + AluSx SINE Alu 1 275 -37 279 0 0 0 chr4 61528702 61528733 -140799614 + (TC)n Simple_repeat Simple_repeat 2 32 0 1012 78 27 13 chr4 61528734 61529489 -140798858 + (TA)n Simple_repeat Simple_repeat 1 765 0 1809 181 6 54 chr4 61530536 61530890 -140797457 - MER1B DNA MER1_type 0 337 1 1921 127 84 28 chr4 61531196 61531551 -140796796 + THE1C LTR MaLR 1 375 0 2001 126 21 0 chr4 61532232 61532517 -140795830 + AluSx SINE Alu 1 291 -21 26 0 0 0 chr4 61533336 61533362 -140794985 + AT_rich Low_complexity Low_complexity 1 26 0 1797 177 10 3 chr4 61533436 61533746 -140794601 + AluJb SINE Alu 1 312 0 28 61 0 0 chr4 61534533 61534582 -140793765 + AT_rich Low_complexity Low_complexity 1 49 0 216 67 0 0 chr4 61534695 61534725 -140793622 + (TG)n Simple_repeat Simple_repeat 1 30 0 266 25 0 50 chr4 61535490 61535530 -140792817 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 420 45 45 0 chr4 61535653 61535720 -140792627 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 403 337 67 11 chr4 61535976 61536243 -140792104 - L2 LINE L2 -1300 2014 1733 412 367 105 46 chr4 61536284 61536953 -140791394 + L2 LINE L2 2549 3271 -1 3242 53 2 2 chr4 61536970 61537381 -140790966 + L1PA5 LINE L1 5736 6146 -8 428 34 0 17 chr4 61538634 61538693 -140789654 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 2522 123 0 6 chr4 61539136 61539502 -140788845 + THE1B LTR MaLR 1 364 0 12398 68 0 7 chr4 61540326 61541928 -140786419 - L1PA3 LINE L1 -4555 1591 1 * 20227 37 2 1 chr4 61541922 61546490 -140781857 + L1PA3 LINE L1 1584 6154 -1 222 335 72 34 chr4 61546955 61547164 -140781183 - MIR SINE MIR -39 223 7 27 29 0 0 chr4 61548467 61548501 -140779846 + AT_rich Low_complexity Low_complexity 1 34 0 370 271 18 71 chr4 61549019 61549189 -140779158 + MER5A DNA MER1_type 1 161 -28 195 42 0 0 chr4 61549588 61549612 -140778735 + (TTTTTA)n Simple_repeat Simple_repeat 3 26 0 472 240 48 0 chr4 61549654 61549779 -140778568 - MIR SINE MIR -67 195 65 321 26 0 0 chr4 61550032 61550070 -140778277 + (TG)n Simple_repeat Simple_repeat 2 39 0 338 247 31 31 chr4 61551173 61551270 -140777077 + MIR3 SINE MIR 108 204 -4 435 248 20 10 chr4 61552398 61552499 -140775848 + L2 LINE L2 3195 3296 -17 762 304 46 8 chr4 61552645 61552908 -140775439 + MLT1J2 LTR MaLR 2 274 -176 24 0 0 0 chr4 61553288 61553312 -140775035 + AT_rich Low_complexity Low_complexity 1 24 0 194 351 43 11 chr4 61554729 61554823 -140773524 + MIR3 SINE MIR 62 158 -50 5568 131 27 15 chr4 61556705 61557956 -140770391 - L1PA16 LINE L1 0 6166 4918 2061 142 51 23 chr4 61558277 61558630 -140769717 + THE1B LTR MaLR 2 364 0 11780 92 4 2 chr4 61558630 61560207 -140768140 + THE1B-int LTR MaLR 1 1580 0 2121 127 48 22 chr4 61560207 61560562 -140767785 + THE1B LTR MaLR 1 364 0 25 31 0 0 chr4 61560610 61560642 -140767705 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr4 61562295 61562317 -140766030 + AT_rich Low_complexity Low_complexity 1 22 0 399 96 0 0 chr4 61563456 61563508 -140764839 + Alu SINE Alu 1 52 -248 924 126 7 0 chr4 61563508 61563643 -140764704 + AluSg/x SINE Alu 159 294 -18 1970 122 7 17 chr4 61564793 61565089 -140763258 + AluSx SINE Alu 1 293 -19 240 290 75 11 chr4 61565150 61565243 -140763104 - MIR SINE MIR -7 255 157 280 223 11 11 chr4 61565467 61565561 -140762786 + GA-rich Low_complexity Low_complexity 3 96 0 346 345 224 25 chr4 61566210 61566984 -140761363 + L3 LINE CR1 568 1495 -82 287 271 80 40 chr4 61567120 61567271 -140761076 - MIR SINE MIR -76 186 30 292 216 34 149 chr4 61568111 61568259 -140760088 - MER67D LTR ERV1 -28 486 356 1255 145 27 106 chr4 61568274 61568483 -140759864 - MER67C LTR ERV1 -316 394 242 2080 25 4 0 chr4 61568483 61568728 -140759619 + L1PA5 LINE L1 5909 6154 0 1255 145 27 106 chr4 61568728 61568953 -140759394 - MER67C LTR ERV1 -468 242 1 184 271 75 65 chr4 61569362 61569469 -140758878 + MIR SINE MIR 105 212 -50 40 49 0 0 chr4 61569656 61569717 -140758630 + AT_rich Low_complexity Low_complexity 1 61 0 670 320 26 26 chr4 61569789 61570017 -140758330 + MIR SINE MIR 17 244 -18 264 30 0 0 chr4 61570027 61570060 -140758287 + (CA)n Simple_repeat Simple_repeat 2 34 0 3134 58 0 15 chr4 61570087 61570498 -140757849 + L1PA7 LINE L1 5744 6148 -6 191 100 75 12 chr4 61570509 61570589 -140757758 + (TA)n Simple_repeat Simple_repeat 2 86 0 365 332 80 16 chr4 61570847 61571034 -140757313 + MIR SINE MIR 14 212 -50 955 201 122 8 chr4 61571050 61571122 -140757225 - LTR52 LTR ERVL -2 419 357 189 0 0 0 chr4 61571122 61571143 -140757204 + (CA)n Simple_repeat Simple_repeat 1 21 0 955 201 122 8 chr4 61571143 61571324 -140757023 - LTR52 LTR ERVL -64 357 137 477 163 22 22 chr4 61571899 61571991 -140756356 + MLT1D LTR MaLR 5 96 -409 207 0 0 0 chr4 61572585 61572608 -140755739 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 22 56 0 0 chr4 61573750 61573786 -140754561 + AT_rich Low_complexity Low_complexity 1 36 0 416 246 80 76 chr4 61574542 61574766 -140753581 + MLT1K LTR MaLR 271 495 -93 237 360 11 0 chr4 61575265 61575354 -140752993 + MLT1K LTR MaLR 77 166 -422 520 148 19 9 chr4 61575619 61575727 -140752620 + GA-rich Low_complexity Low_complexity 2 110 0 450 218 19 26 chr4 61575717 61575873 -140752474 + G-rich Low_complexity Low_complexity 3 157 0 * 625 130 40 34 chr4 61575846 61576023 -140752324 + GA-rich Low_complexity Low_complexity 2 179 0 707 239 37 95 chr4 61576368 61576804 -140751543 - MER57A LTR ERV1 -2 401 1 368 207 108 36 chr4 61577029 61577140 -140751207 - MIR SINE MIR -37 225 107 447 281 125 0 chr4 61577408 61577568 -140750779 - MLT1J1 LTR MaLR -266 180 1 25 0 0 0 chr4 61577665 61577690 -140750657 + AT_rich Low_complexity Low_complexity 1 25 0 1053 234 103 40 chr4 61577907 61578258 -140750089 - MLT1A2 LTR MaLR 0 374 2 204 158 0 0 chr4 61578839 61578877 -140749470 + A-rich Low_complexity Low_complexity 2 39 0 210 193 0 0 chr4 61579079 61579136 -140749211 + (TGGA)n Simple_repeat Simple_repeat 1 57 0 219 122 20 61 chr4 61579315 61579364 -140748983 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 766 198 149 24 chr4 61579828 61580116 -140748231 + MER5C DNA MER1_type 1 324 0 183 320 51 56 chr4 61581787 61581965 -140746382 + L2 LINE L2 2637 2813 -501 2037 124 3 29 chr4 61582591 61582898 -140745449 - AluSq SINE Alu -14 299 1 12247 30 6 0 chr4 61584149 61586405 -140741942 + L1PA4 LINE L1 3920 6179 0 2394 126 4 99 chr4 61586474 61586950 -140741397 - Tigger2a DNA MER2_type -3 431 1 7791 134 125 127 chr4 61587498 61588977 -140739370 + pTR5 LTR ERV1 56 549 -1889 274 176 198 33 chr4 61588977 61589068 -140739279 - L2 LINE L2 -7 3265 3160 7791 134 125 127 chr4 61589068 61590955 -140737392 + pTR5 LTR ERV1 549 2438 0 2374 92 0 0 chr4 61590974 61591278 -140737069 - AluY SINE Alu 0 311 8 1225 189 5 5 chr4 61591728 61591940 -140736407 - AluJb SINE Alu -31 281 70 189 74 0 0 chr4 61592926 61592953 -140735394 + (TG)n Simple_repeat Simple_repeat 2 28 0 201 39 0 0 chr4 61593033 61593059 -140735288 + (A)n Simple_repeat Simple_repeat 1 26 0 390 366 40 6 chr4 61593664 61593839 -140734508 + L2 LINE L2 2577 2757 -557 201 295 0 161 chr4 61593891 61594040 -140734307 + MER5A DNA MER1_type 65 189 0 328 393 66 0 chr4 61594103 61594286 -140734061 + L2 LINE L2 2866 3060 -212 187 318 127 27 chr4 61594427 61594537 -140733810 + L2 LINE L2 3148 3268 -4 2148 74 3 14 chr4 61596768 61597051 -140731296 - AluY SINE Alu -31 280 1 29 78 0 0 chr4 61597528 61597592 -140730755 + AT_rich Low_complexity Low_complexity 1 64 0 313 191 14 204 chr4 61597997 61598081 -140730266 - MIR3 SINE MIR -3 205 159 1958 135 0 0 chr4 61598081 61598362 -140729985 + AluSx SINE Alu 4 284 -28 313 191 14 204 chr4 61598362 61598424 -140729923 - MIR3 SINE MIR -49 159 87 232 366 11 0 chr4 61598797 61598890 -140729457 + MLT1J2 LTR MaLR 69 162 -288 336 359 26 13 chr4 61599750 61599906 -140728441 + MIR SINE MIR 34 191 -71 229 204 0 0 chr4 61599948 61600002 -140728345 + T-rich Low_complexity Low_complexity 3 56 0 754 212 35 0 chr4 61600265 61600435 -140727912 + MER58A DNA MER1_type 46 221 -3 22 56 0 0 chr4 61600634 61600670 -140727677 + AT_rich Low_complexity Low_complexity 1 36 0 240 259 168 53 chr4 61600691 61600822 -140727525 - L2 LINE L2 -20 3293 3148 1659 159 43 30 chr4 61600857 61601158 -140727189 - AluJo SINE Alu -3 309 5 729 287 22 13 chr4 61601252 61601482 -140726865 - MIR SINE MIR -8 254 23 542 344 147 3 chr4 61601520 61601848 -140726499 - L2 LINE L2 -301 3012 2640 431 296 87 89 chr4 61601849 61602343 -140726004 + MLT1J LTR MaLR 1 493 -18 311 286 33 0 chr4 61602356 61602447 -140725900 - L2 LINE L2 -665 2649 2556 1065 191 4 76 chr4 61603564 61603800 -140724547 - MER20 DNA MER1_type 0 219 1 211 217 0 0 chr4 61604690 61604736 -140723611 + (TTCA)n Simple_repeat Simple_repeat 4 49 0 460 314 33 76 chr4 61605155 61605458 -140722889 - L2 LINE L2 -563 2751 2462 214 254 32 0 chr4 61606644 61606707 -140721640 + (TAGG)n Simple_repeat Simple_repeat 1 65 0 432 289 59 32 chr4 61606837 61607024 -140721323 - MIR SINE MIR -64 198 7 417 252 10 10 chr4 61608859 61608962 -140719385 + MER94 DNA DNA 31 133 -1 232 224 0 0 chr4 61609447 61609496 -140718851 - Tigger3(Golem) DNA MER2_type -1315 1714 1666 32 26 0 0 chr4 61609571 61609610 -140718737 + AT_rich Low_complexity Low_complexity 1 39 0 358 0 0 75 chr4 61609716 61609783 -140718564 + (TA)n Simple_repeat Simple_repeat 2 63 0 24 53 0 0 chr4 61609886 61609924 -140718423 + AT_rich Low_complexity Low_complexity 1 38 0 359 358 53 33 chr4 61610020 61610319 -140718028 - MLT1J LTR MaLR -50 461 157 341 296 31 25 chr4 61611520 61611679 -140716668 + L1M3c LINE L1 1 160 -5981 1290 138 83 0 chr4 61612100 61612340 -140716007 + L1MA9 LINE L1 6048 6307 -5 4733 35 2 0 chr4 61612889 61613453 -140714894 - L1PA5 LINE L1 -5 6149 5585 544 332 81 18 chr4 61613817 61614040 -140714307 - MIR SINE MIR -24 238 2 730 159 11 28 chr4 61615324 61615506 -140712841 + CT-rich Low_complexity Low_complexity 1 179 0 300 231 0 0 chr4 61615506 61615558 -140712789 + polypyrimidine Low_complexity Low_complexity 3 54 0 322 343 95 18 chr4 61617015 61617184 -140711163 - MIR SINE MIR -61 201 20 324 224 105 0 chr4 61617270 61617346 -140711001 - L2 LINE L2 0 3313 3230 468 280 48 89 chr4 61617354 61617429 -140710918 - MLT1J LTR MaLR -208 303 226 2234 67 24 0 chr4 61617429 61617727 -140710620 + AluY SINE Alu 1 305 -6 468 280 48 89 chr4 61617727 61617965 -140710382 - MLT1J LTR MaLR -285 226 3 2312 84 3 3 chr4 61618318 61618627 -140709720 + AluY SINE Alu 1 309 -2 576 312 97 52 chr4 61621394 61621775 -140706572 - MLT1K LTR MaLR -14 574 177 398 272 125 36 chr4 61622573 61622797 -140705550 - L1MC4 LINE L1 -188 7854 7611 572 157 0 9 chr4 61622866 61622974 -140705373 + FLAM_C SINE Alu 1 107 -36 195 100 0 0 chr4 61622988 61623018 -140705329 + (GA)n Simple_repeat Simple_repeat 2 31 0 495 308 69 66 chr4 61623248 61623551 -140704796 - L1MC4 LINE L1 -1028 6967 6665 214 254 32 0 chr4 61624154 61624217 -140704130 + (TAGG)n Simple_repeat Simple_repeat 1 65 0 432 289 59 32 chr4 61624346 61624533 -140703814 - MIR SINE MIR -64 198 7 417 252 10 10 chr4 61626369 61626472 -140701875 + MER94 DNA DNA 31 133 -1 232 224 0 0 chr4 61626957 61627006 -140701341 - Tigger3(Golem) DNA MER2_type -1315 1714 1666 32 26 0 0 chr4 61627081 61627120 -140701227 + AT_rich Low_complexity Low_complexity 1 39 0 208 0 0 59 chr4 61627226 61627260 -140701087 + (TA)n Simple_repeat Simple_repeat 2 33 0 24 53 0 0 chr4 61627363 61627401 -140700946 + AT_rich Low_complexity Low_complexity 1 38 0 359 358 53 33 chr4 61627497 61627796 -140700551 - MLT1J LTR MaLR -50 461 157 356 289 31 25 chr4 61628996 61629155 -140699192 + L1M3c LINE L1 1 160 -5981 1312 133 83 0 chr4 61629576 61629816 -140698531 + L1MA9 LINE L1 6048 6307 -5 4779 32 2 0 chr4 61630366 61630930 -140697417 - L1PA5 LINE L1 -5 6149 5585 546 336 81 18 chr4 61631294 61631517 -140696830 - MIR SINE MIR -24 238 2 950 115 6 28 chr4 61632765 61632821 -140695526 + (TTTC)n Simple_repeat Simple_repeat 1 232 0 950 115 6 28 chr4 61632821 61633003 -140695344 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 322 343 95 18 chr4 61634515 61634684 -140693663 - MIR SINE MIR -61 201 20 324 224 105 0 chr4 61634770 61634846 -140693501 - L2 LINE L2 0 3313 3230 468 280 48 89 chr4 61634854 61634929 -140693418 - MLT1J LTR MaLR -208 303 226 2201 70 24 0 chr4 61634929 61635227 -140693120 + AluY SINE Alu 1 305 -6 468 280 48 89 chr4 61635227 61635465 -140692882 - MLT1J LTR MaLR -285 226 3 2304 84 3 3 chr4 61635819 61636127 -140692220 + AluY SINE Alu 1 308 -3 563 315 97 52 chr4 61638894 61639275 -140689072 - MLT1K LTR MaLR -14 574 177 398 272 125 36 chr4 61640073 61640297 -140688050 - L1MC4 LINE L1 -188 7854 7611 572 157 0 9 chr4 61640366 61640474 -140687873 + FLAM_C SINE Alu 1 107 -36 195 100 0 0 chr4 61640488 61640518 -140687829 + (GA)n Simple_repeat Simple_repeat 2 31 0 501 320 29 67 chr4 61640735 61641051 -140687296 - L1MC4 LINE L1 -1040 7002 6699 32 26 0 0 chr4 61641809 61641848 -140686499 + AT_rich Low_complexity Low_complexity 1 39 0 28 48 0 0 chr4 61642874 61642916 -140685431 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr4 61643080 61643106 -140685241 + AT_rich Low_complexity Low_complexity 1 26 0 2171 104 3 0 chr4 61643857 61644146 -140684201 - AluSp SINE Alu -23 290 1 370 350 33 17 chr4 61644491 61644671 -140683676 + L3 LINE CR1 1381 1563 -14 294 364 56 28 chr4 61644783 61644926 -140683421 + L2 LINE L2 3122 3268 -4 223 120 0 40 chr4 61644919 61644969 -140683378 + (GAAAA)n Simple_repeat Simple_repeat 3 50 0 * 21 36 0 0 chr4 61645274 61645302 -140683045 + AT_rich Low_complexity Low_complexity 1 28 0 602 337 116 0 chr4 61645472 61645775 -140682572 + LTR16A LTR ERVL 113 450 0 2139 211 32 41 chr4 61646385 61647000 -140681347 + L1MB3 LINE L1 3623 4232 -1914 23 0 0 0 chr4 61647000 61647023 -140681324 + AT_rich Low_complexity Low_complexity 1 23 0 21238 66 6 1 chr4 61647028 61650628 -140677719 - L1PA6 LINE L1 -11 6143 2532 4678 76 1 14 chr4 61650628 61651286 -140677061 + L1PA6 LINE L1 1871 2520 -3626 4535 215 46 12 chr4 61651284 61653180 -140675167 + L1MB3 LINE L1 4217 6182 -1 * 246 373 28 21 chr4 61653750 61653892 -140674455 + MIR3 SINE MIR 19 161 -47 245 284 40 14 chr4 61655058 61655132 -140673215 - MIR3 SINE MIR -29 179 104 246 386 71 32 chr4 61657676 61657984 -140670363 + L2 LINE L2 1618 1937 -1377 458 355 39 15 chr4 61658028 61658259 -140670088 - MIR SINE MIR 0 262 30 403 370 35 6 chr4 61658351 61658524 -140669823 + MER5B DNA MER1_type 1 178 0 287 309 89 94 chr4 61658920 61659292 -140669055 + L2 LINE L2 2897 3266 -6 418 320 108 12 chr4 61659328 61659554 -140668793 - MIR SINE MIR 0 262 18 24 0 0 0 chr4 61660169 61660193 -140668154 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr4 61661296 61661326 -140667021 + AT_rich Low_complexity Low_complexity 1 30 0 257 317 41 49 chr4 61661699 61661822 -140666525 - MIR SINE MIR -116 146 25 191 311 14 0 chr4 61661847 61661921 -140666426 - MIR SINE MIR -89 173 99 18768 31 0 0 chr4 61661980 61665000 -140663347 - L1PA3 LINE L1 0 6155 3135 16219 45 0 1 chr4 61665000 61667035 -140661312 + L1PA3 LINE L1 1109 3142 -3004 30 59 0 0 chr4 61667789 61667840 -140660507 + AT_rich Low_complexity Low_complexity 1 51 0 184 239 65 0 chr4 61668390 61668436 -140659911 + MIR SINE MIR 193 241 -21 2447 61 3 19 chr4 61668637 61668948 -140659399 - AluY SINE Alu -4 307 2 26 0 0 0 chr4 61669912 61669938 -140658409 + AT_rich Low_complexity Low_complexity 1 26 0 359 354 71 75 chr4 61670515 61671052 -140657295 + L2 LINE L2 2434 2968 -346 336 102 0 0 chr4 61671150 61671199 -140657148 + (TATAA)n Simple_repeat Simple_repeat 4 52 0 193 430 18 24 chr4 61671523 61671688 -140656659 - L3 LINE CR1 -3 1574 1411 837 233 143 16 chr4 61671693 61671938 -140656409 - LTR52 LTR ERVL -131 290 15 1108 228 39 7 chr4 61671943 61672250 -140656097 + L1MC3 LINE L1 4424 4740 -1406 284 206 25 44 chr4 61672250 61672410 -140655937 + (TATATG)n Simple_repeat Simple_repeat 3 159 0 1668 237 49 31 chr4 61672419 61672799 -140655548 - MLT2D LTR ERVL -20 534 1 8243 193 120 50 chr4 61672802 61674735 -140653612 + L1MC3 LINE L1 4738 6533 -1252 189 107 0 0 chr4 61674735 61674763 -140653584 + (CA)n Simple_repeat Simple_repeat 1 28 0 8243 193 120 50 chr4 61674763 61674983 -140653364 + L1MC3 LINE L1 6533 6736 -1049 254 281 22 11 chr4 61674983 61675072 -140653275 + MLT1F1 LTR MaLR 33 122 -445 8243 193 120 50 chr4 61675072 61675576 -140652771 + L1MC3 LINE L1 6736 7203 -582 2192 121 0 10 chr4 61675576 61675889 -140652458 + AluSx SINE Alu 1 310 -2 8243 193 120 50 chr4 61675889 61675971 -140652376 + L1MC3 LINE L1 7203 7765 -20 23 0 0 0 chr4 61675976 61675999 -140652348 + AT_rich Low_complexity Low_complexity 1 23 0 412 344 38 62 chr4 61676595 61676935 -140651412 - MLT1H LTR MaLR -195 354 23 221 315 27 0 chr4 61676949 61677022 -140651325 + L2 LINE L2 3224 3298 -15 2448 200 22 6 chr4 61677051 61677542 -140650805 - L1PA16 LINE L1 0 6166 5668 1334 253 50 31 chr4 61677558 61678076 -140650271 - L1P LINE L1 -2822 3324 2797 572 361 40 9 chr4 61678834 61679158 -140649189 + LTR16A LTR ERVL 105 438 -12 201 196 20 0 chr4 61679880 61679931 -140648416 + (TA)n Simple_repeat Simple_repeat 1 52 0 201 382 48 55 chr4 61681198 61681776 -140646571 + L2 LINE L2 223 796 -2518 2175 160 25 6 chr4 61681837 61682194 -140646153 + THE1B LTR MaLR 1 364 0 263 176 39 0 chr4 61682194 61682245 -140646102 + THE1B-int LTR MaLR 1 53 -1527 599 182 0 0 chr4 61682245 61682344 -140646003 + LTR18A LTR ERVL 1 99 -258 5103 126 3 1 chr4 61682345 61683074 -140645273 + THE1B-int LTR MaLR 851 1580 0 2068 169 22 6 chr4 61683074 61683430 -140644917 + THE1B LTR MaLR 1 362 -2 189 368 19 28 chr4 61683744 61683850 -140644497 + L2 LINE L2 1233 1337 -1977 1495 263 113 19 chr4 61684631 61685304 -140643043 - L1M4 LINE L1 -4900 1955 1220 460 223 54 54 chr4 61685570 61685736 -140642611 - L1M4 LINE L1 -5635 1224 1059 25 65 0 0 chr4 61685772 61685818 -140642529 + AT_rich Low_complexity Low_complexity 1 46 0 201 374 45 28 chr4 61685820 61685999 -140642348 + L2 LINE L2 2418 2599 -715 381 340 56 63 chr4 61686289 61686557 -140641790 + L2 LINE L2 2936 3201 -71 396 268 87 112 chr4 61686640 61687032 -140641315 + L2 LINE L2 2924 3305 -8 392 363 41 0 chr4 61687475 61687621 -140640726 + L2 LINE L2 3121 3272 0 26 0 0 0 chr4 61688126 61688152 -140640195 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr4 61688736 61688759 -140639588 + AT_rich Low_complexity Low_complexity 1 23 0 180 215 123 62 chr4 61689623 61689688 -140638659 + L3 LINE CR1 888 956 -621 1945 130 3 10 chr4 61690156 61690456 -140637891 + AluSc SINE Alu 1 298 -11 1110 214 23 5 chr4 61690699 61690919 -140637428 - MER58A DNA MER1_type 0 224 1 208 343 14 0 chr4 61690930 61691000 -140637347 - MER5B DNA MER1_type -3 175 105 23 0 0 0 chr4 61691041 61691064 -140637283 + AT_rich Low_complexity Low_complexity 1 23 0 243 327 99 10 chr4 61691600 61691701 -140636646 + L2 LINE L2 3201 3310 -3 279 114 0 0 chr4 61692662 61692706 -140635641 + (TG)n Simple_repeat Simple_repeat 2 45 0 504 261 258 14 chr4 61692753 61693048 -140635299 - L1MC4a LINE L1 -1866 5942 5576 225 214 14 29 chr4 61693092 61693162 -140635185 - L1MC4a LINE L1 -2359 5449 5381 1388 156 0 0 chr4 61693172 61693390 -140634957 - THE1B LTR MaLR 0 364 147 1072 179 0 0 chr4 61693623 61693791 -140634556 - THE1B LTR MaLR -196 168 1 2251 112 0 9 chr4 61693791 61694122 -140634225 - THE1B-int LTR MaLR 0 1580 1253 909 113 0 0 chr4 61694181 61694305 -140634042 + AluJb SINE Alu 1 124 -188 2922 84 47 5 chr4 61694306 61694712 -140633635 - THE1B-int LTR MaLR -1156 424 2 2550 124 0 0 chr4 61694714 61695077 -140633270 - THE1B LTR MaLR -1 363 1 979 305 128 8 chr4 61695122 61695599 -140632748 + L2 LINE L2 2763 3313 0 180 219 0 0 chr4 61696944 61696985 -140631362 + (TATATG)n Simple_repeat Simple_repeat 5 45 0 194 319 87 0 chr4 61697452 61697521 -140630826 + MIR SINE MIR 104 178 -84 3484 134 37 69 chr4 61697727 61698082 -140630265 - L1PA13 LINE L1 -192 5971 5649 2869 79 69 9 chr4 61698082 61698501 -140629846 + MLT2A1 LTR ERVL 1 444 0 3484 134 37 69 chr4 61698501 61698854 -140629493 - L1PA13 LINE L1 -514 5649 5286 22 0 0 0 chr4 61699612 61699634 -140628713 + AT_rich Low_complexity Low_complexity 1 22 0 2279 246 57 106 chr4 61699722 61700709 -140627638 - LTR52-int LTR ERVL -2574 982 45 263 322 22 11 chr4 61700762 61700852 -140627495 + MIR SINE MIR 2 92 -170 711 278 76 26 chr4 61700946 61701288 -140627059 - LTR52 LTR ERVL -50 371 13 215 394 58 0 chr4 61701465 61701569 -140626778 + L2 LINE L2 3093 3202 -70 192 333 35 23 chr4 61701730 61701817 -140626530 + MIR SINE MIR 59 146 -116 572 273 56 32 chr4 61702670 61702886 -140625461 + MIR SINE MIR 15 235 -27 13444 208 18 8 chr4 61703646 61704736 -140623611 + L1PA15 LINE L1 2210 3288 -2877 213 39 0 0 chr4 61704736 61704762 -140623585 + (CAA)n Simple_repeat Simple_repeat 2 27 0 13444 208 18 8 chr4 61704762 61707572 -140620775 + L1PA15 LINE L1 3288 6159 -6 1228 136 99 85 chr4 61707618 61707912 -140620435 - AluJo SINE Alu -14 298 1 644 314 34 0 chr4 61708183 61708387 -140619960 - MIR SINE MIR -26 236 26 723 305 38 42 chr4 61708591 61709017 -140619330 + L1MEc LINE L1 94 517 -5879 30 27 0 0 chr4 61709438 61709475 -140618872 + AT_rich Low_complexity Low_complexity 1 37 0 1335 215 86 50 chr4 61709556 61709938 -140618409 + MSTD LTR MaLR 1 396 0 189 74 0 0 chr4 61710401 61710428 -140617919 + (TA)n Simple_repeat Simple_repeat 1 27 0 301 196 0 98 chr4 61710429 61710531 -140617816 + L1MC4 LINE L1 6612 6703 -1339 * 319 303 33 16 chr4 61710451 61710573 -140617774 - L1MC4 LINE L1 -1337 6705 6582 1919 263 45 40 chr4 61710831 61711413 -140616934 - MLT1E LTR MaLR -8 585 1 24 53 0 0 chr4 61711642 61711680 -140616667 + AT_rich Low_complexity Low_complexity 1 38 0 204 152 15 45 chr4 61711978 61712044 -140616303 + (TAA)n Simple_repeat Simple_repeat 2 65 0 25 31 0 0 chr4 61712146 61712178 -140616169 + AT_rich Low_complexity Low_complexity 1 32 0 865 236 14 28 chr4 61712204 61712420 -140615927 + L1PA16 LINE L1 4751 4963 -1183 2239 181 8 5 chr4 61712422 61712803 -140615544 + MSTB LTR MaLR 1 382 -44 4382 156 44 3 chr4 61712811 61713587 -140614760 + L1PA16 LINE L1 5339 6146 -20 32 43 0 0 chr4 61713587 61713633 -140614714 + AT_rich Low_complexity Low_complexity 1 46 0 1051 80 0 0 chr4 61716249 61716387 -140611960 + AluSp/q SINE Alu 175 312 -1 310 268 49 0 chr4 61716387 61716469 -140611878 - L1MC4 LINE L1 -1342 6700 6615 305 326 0 0 chr4 61716390 61716479 -140611868 + L1MC4 LINE L1 6614 6702 -1340 * 455 307 49 42 chr4 61717853 61718267 -140610080 + MLT1K LTR MaLR 117 566 -22 199 77 26 26 chr4 61718900 61718939 -140609408 + (TG)n Simple_repeat Simple_repeat 2 40 0 595 250 33 7 chr4 61719276 61719428 -140608919 + L2 LINE L2 2580 2735 -579 760 294 146 6 chr4 61719554 61719870 -140608477 + L2 LINE L2 2954 3313 0 1750 184 0 3 chr4 61720869 61721179 -140607168 - AluJb SINE Alu -3 309 1 463 326 120 38 chr4 61721934 61722564 -140605783 - L2 LINE L2 -64 3208 2535 1894 151 109 40 chr4 61722718 61723122 -140605225 + MSTB1 LTR MaLR 1 432 0 23 54 0 0 chr4 61723229 61723266 -140605081 + AT_rich Low_complexity Low_complexity 1 37 0 514 193 0 28 chr4 61724368 61724477 -140603870 - FLAM_A SINE Alu -9 133 28 565 199 88 15 chr4 61724480 61724616 -140603731 - MSTD LTR MaLR -49 347 202 * 1170 126 14 37 chr4 61724604 61724818 -140603529 - MER50 LTR ERV1 -525 209 1 1558 97 35 23 chr4 61725247 61725505 -140602842 - L1PA13 LINE L1 -7 6156 5896 315 348 73 32 chr4 61725971 61726218 -140602129 - MIR SINE MIR -5 257 1 182 408 0 0 chr4 61727641 61727717 -140600630 + L2 LINE L2 2986 3061 -211 652 203 127 0 chr4 61730300 61730458 -140597889 + MLT1C LTR MaLR 22 199 -268 3232 199 50 6 chr4 61730462 61730641 -140597706 - MER67C LTR ERV1 -5 705 535 2354 104 0 0 chr4 61730641 61730949 -140597398 - AluSg SINE Alu -2 308 1 3232 199 50 6 chr4 61730949 61731443 -140596904 - MER67C LTR ERV1 -175 535 2 953 192 26 1 chr4 61731444 61731683 -140596664 + MLT1C LTR MaLR 194 467 0 375 269 30 60 chr4 61731738 61731804 -140596543 + MIR SINE MIR 133 195 -67 2973 157 15 44 chr4 61731804 61732347 -140596000 - MER1A DNA MER1_type 0 527 1 375 269 30 60 chr4 61732347 61732414 -140595933 + MIR SINE MIR 195 262 0 600 308 25 10 chr4 61733001 61733199 -140595148 - MIR SINE MIR -8 254 54 357 354 102 23 chr4 61733634 61733849 -140594498 + HAL1 LINE L1 113 344 -2163 1971 147 123 8 chr4 61733884 61734266 -140594081 - MSTA LTR MaLR 0 428 3 23 33 0 0 chr4 61734626 61734656 -140593691 + AT_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chr4 61734985 61735028 -140593319 + AT_rich Low_complexity Low_complexity 1 43 0 29 0 0 0 chr4 61735067 61735096 -140593251 + AT_rich Low_complexity Low_complexity 1 29 0 285 312 41 47 chr4 61735141 61735302 -140593045 - MIR SINE MIR -68 140 2 183 375 18 48 chr4 61737146 61737314 -140591033 - MIR SINE MIR -5 257 95 372 216 30 60 chr4 61737919 61738053 -140590294 + HAL1b LINE L1 364 493 -855 1998 128 0 38 chr4 61738078 61738398 -140589949 + AluSx SINE Alu 1 308 -4 8538 167 3 2 chr4 61738472 61739978 -140588369 - L1P LINE L1 -1237 4909 3402 1111 379 16 4 chr4 61740232 61740747 -140587600 - HERV16 LTR ERVL -2096 2900 2380 1504 317 40 40 chr4 61740751 61741099 -140587248 - HERV16 LTR ERVL -3852 1144 797 2070 90 11 0 chr4 61741099 61741414 -140586933 - AluY SINE Alu 0 318 1 1504 317 40 40 chr4 61741414 61741843 -140586504 - HERV16 LTR ERVL -4198 798 366 615 303 51 20 chr4 61742508 61742907 -140585440 - LTR16B LTR ERVL -2 462 8 1593 132 82 25 chr4 61743012 61743293 -140585054 + AluJb SINE Alu 1 297 -15 22 0 0 0 chr4 61743444 61743466 -140584881 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 61743672 61743700 -140584647 + AT_rich Low_complexity Low_complexity 1 28 0 240 265 91 39 chr4 61743700 61744009 -140584338 + L1M4 LINE L1 4110 4434 -1712 220 282 28 14 chr4 61744473 61744544 -140583803 - L2 LINE L2 0 3313 3242 2145 127 36 28 chr4 61745055 61745416 -140582931 + THE1B LTR MaLR 1 364 0 1071 236 31 0 chr4 61746736 61746994 -140581353 - LTR56 LTR ERV1 -167 278 13 282 389 62 10 chr4 61747249 61747442 -140580905 + L2 LINE L2 2674 2876 -438 493 277 103 41 chr4 61748356 61748648 -140579699 + MLT1H LTR MaLR 46 355 -194 239 245 0 0 chr4 61748662 61748711 -140579636 + MLT1H LTR MaLR 501 549 0 1798 174 22 87 chr4 61749081 61749528 -140578819 - MER34 LTR ERV1 0 542 125 352 210 12 37 chr4 61749645 61749726 -140578621 - MER34 LTR ERV1 -463 79 1 37 0 0 0 chr4 61749800 61749837 -140578510 + AT_rich Low_complexity Low_complexity 1 37 0 2318 168 35 10 chr4 61749886 61750367 -140577980 + L1MB3 LINE L1 5689 6181 -2 369 292 62 8 chr4 61750624 61750804 -140577543 + MIR SINE MIR 7 245 -17 1795 191 57 39 chr4 61751459 61751661 -140576686 - MSTD LTR MaLR -1 395 198 2049 162 15 3 chr4 61751661 61752000 -140576347 - MER61A LTR ERV1 0 343 1 1795 191 57 39 chr4 61752000 61752185 -140576162 - MSTD LTR MaLR -198 198 1 212 319 217 7 chr4 61753007 61753145 -140575202 + L3 LINE CR1 1098 1264 -313 268 354 21 0 chr4 61753206 61753302 -140575045 - L2 LINE L2 -1 3271 3174 293 311 38 30 chr4 61753333 61753465 -140574882 + L3 LINE CR1 1323 1455 -122 425 273 56 56 chr4 61753892 61754123 -140574224 - MLT1K LTR MaLR -24 564 334 198 143 0 0 chr4 61754758 61754793 -140573554 + (CAATT)n Simple_repeat Simple_repeat 3 37 0 352 323 115 49 chr4 61755105 61755452 -140572895 - L2 LINE L2 0 3313 2944 440 193 8 0 chr4 61756143 61756262 -140572085 + (TA)n Simple_repeat Simple_repeat 1 120 0 195 381 119 0 chr4 61756837 61756955 -140571392 + L2 LINE L2 3134 3265 -7 541 202 23 54 chr4 61757113 61757242 -140571105 + FLAM_A SINE Alu 1 125 -17 232 258 140 54 chr4 61757356 61757449 -140570898 - MER5A DNA MER1_type 0 189 89 2073 116 0 58 chr4 61758462 61758791 -140569556 - AluJb SINE Alu -2 310 1 270 0 0 0 chr4 61760041 61760071 -140568276 + (T)n Simple_repeat Simple_repeat 1 30 0 25 0 0 0 chr4 61760250 61760275 -140568072 + AT_rich Low_complexity Low_complexity 1 25 0 5205 134 20 18 chr4 61762055 61763348 -140564999 + L1PA15 LINE L1 4739 6042 -123 4446 77 19 133 chr4 61763348 61764124 -140564223 - LTR12 LTR ERV1 0 688 1 5205 134 20 18 chr4 61764124 61764249 -140564098 + L1PA15 LINE L1 6042 6165 0 27 29 0 0 chr4 61764389 61764423 -140563924 + AT_rich Low_complexity Low_complexity 1 34 0 450 305 52 0 chr4 61764550 61764704 -140563643 + MIR SINE MIR 59 220 -42 2817 144 69 4 chr4 61765052 61765530 -140562817 - LTR44 LTR ERV1 -10 509 1 289 262 0 10 chr4 61767020 61767123 -140561224 + (TA)n Simple_repeat Simple_repeat 2 103 0 1074 270 50 96 chr4 61768789 61769457 -140558890 - MER77 LTR ERV1 -4 601 53 2229 95 3 3 chr4 61769798 61770093 -140558254 - AluSq SINE Alu -18 295 1 1617 231 46 44 chr4 61772186 61772667 -140555680 + MLT1D LTR MaLR 24 505 0 1978 148 7 0 chr4 61772750 61773048 -140555299 + AluSq SINE Alu 1 300 -13 301 364 53 15 chr4 61773142 61773348 -140554999 - MIR SINE MIR -28 234 21 22 0 0 0 chr4 61773934 61773956 -140554391 + AT_rich Low_complexity Low_complexity 1 22 0 309 89 0 0 chr4 61773982 61774027 -140554320 + (TG)n Simple_repeat Simple_repeat 2 46 0 196 371 36 21 chr4 61776758 61776898 -140551449 - L2 LINE L2 -1 3312 3171 25 31 0 0 chr4 61777611 61777643 -140550704 + AT_rich Low_complexity Low_complexity 1 32 0 191 356 69 10 chr4 61778897 61778998 -140549349 + MIR3 SINE MIR 93 199 -9 781 197 14 14 chr4 61779093 61779240 -140549107 - MER20 DNA MER1_type 0 219 73 1296 277 52 69 chr4 61779240 61780013 -140548334 + L1ME3A LINE L1 5411 6170 0 1033 338 167 35 chr4 61780577 61782191 -140546156 + L2 LINE L2 1466 3302 -11 24 0 0 0 chr4 61782676 61782700 -140545647 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr4 61782806 61782838 -140545509 + AT_rich Low_complexity Low_complexity 1 32 0 677 283 28 3 chr4 61783014 61783213 -140545134 - MIR SINE MIR -3 205 5 760 282 98 50 chr4 61783502 61783921 -140544426 - LTR16A1 LTR ERVL -18 439 1 930 252 86 49 chr4 61784563 61784972 -140543375 - L1M4 LINE L1 -3451 2695 2272 8091 238 35 20 chr4 61785013 61787476 -140540871 + L1M4 LINE L1 2686 5189 -957 2468 80 0 0 chr4 61787476 61787776 -140540571 + AluY SINE Alu 1 300 -11 8091 238 35 20 chr4 61787776 61787867 -140540480 + L1M4 LINE L1 5189 5277 -869 629 221 14 21 chr4 61787893 61788038 -140540309 + L1M4 LINE L1 5472 5615 -563 31018 109 11 60 chr4 61788040 61794494 -140533853 + L1PA7 LINE L1 12 6143 -11 1217 228 37 30 chr4 61794872 61795170 -140533177 - AluJo SINE Alu -4 308 9 26 0 0 0 chr4 61795350 61795376 -140532971 + AT_rich Low_complexity Low_complexity 1 26 0 1244 115 75 0 chr4 61795883 61796083 -140532264 - L1PA15 LINE L1 -2 6163 5949 270 106 0 0 chr4 61796156 61796203 -140532144 + (TC)n Simple_repeat Simple_repeat 2 48 0 238 232 24 0 chr4 61796203 61796285 -140532062 + (TA)n Simple_repeat Simple_repeat 2 85 0 240 219 0 0 chr4 61796285 61796349 -140531998 + L1MC4 LINE L1 6640 6703 -1339 271 676 0 0 chr4 61796349 61796552 -140531795 + (TA)n Simple_repeat Simple_repeat 1 203 0 279 372 29 53 chr4 61796578 61796691 -140531656 + L2 LINE L2 301 408 -2906 2513 106 19 6 chr4 61796691 61797050 -140531297 + THE1B LTR MaLR 1 364 0 279 372 29 53 chr4 61797050 61797143 -140531204 + L2 LINE L2 408 502 -2812 271 308 8 39 chr4 61797521 61797651 -140530696 + MIR SINE MIR 86 211 -51 225 0 0 0 chr4 61798466 61798491 -140529856 + (TG)n Simple_repeat Simple_repeat 2 26 0 443 279 40 53 chr4 61799858 61800084 -140528263 - L1MC4a LINE L1 -1742 6066 5844 3558 164 79 6 chr4 61800088 61800722 -140527625 - MER39 LTR ERV1 -27 680 1 1310 279 63 8 chr4 61801865 61802259 -140526088 - LTR16C LTR ERVL -2 489 74 189 324 95 0 chr4 61802453 61802527 -140525820 + MIR SINE MIR 172 252 -10 183 396 47 0 chr4 61803478 61803584 -140524763 + MIR SINE MIR 98 208 -54 372 242 0 44 chr4 61803970 61804061 -140524286 - MIR SINE MIR -17 245 159 372 320 16 0 chr4 61804063 61804185 -140524162 + LTR16A1 LTR ERVL 3 126 -331 839 269 70 70 chr4 61804319 61804865 -140523482 + MLT1G LTR MaLR 46 590 0 418 307 65 0 chr4 61805012 61805165 -140523182 - MIR SINE MIR -98 164 2 24 0 0 0 chr4 61806177 61806201 -140522146 + AT_rich Low_complexity Low_complexity 1 24 0 2580 164 33 64 chr4 61806467 61807048 -140521299 - MER34B LTR ERV1 0 565 3 240 316 0 38 chr4 61807422 61807501 -140520846 + L2 LINE L2 3222 3297 -16 266 368 35 0 chr4 61807511 61807625 -140520722 - L2 LINE L2 -16 3297 3180 745 328 139 14 chr4 61807643 61808003 -140520344 + L2 LINE L2 888 1292 -2022 858 301 169 17 chr4 61808003 61808132 -140520215 + L2 LINE L2 1572 1680 -1634 243 0 0 0 chr4 61808132 61808159 -140520188 + (GA)n Simple_repeat Simple_repeat 2 28 0 858 301 169 17 chr4 61808159 61808670 -140519677 + L2 LINE L2 1680 2309 -1005 2443 66 0 0 chr4 61808670 61808974 -140519373 + AluY SINE Alu 1 304 -7 180 351 264 5 chr4 61809050 61809258 -140519089 + L2 LINE L2 2960 3221 -92 892 371 63 32 chr4 61809300 61810148 -140518199 - L2 LINE L2 -133 3180 2301 305 362 34 7 chr4 61810183 61810332 -140518015 - MIR SINE MIR -98 164 12 436 297 183 3 chr4 61810346 61810636 -140517711 - L2 LINE L2 -1048 2266 1925 2257 87 0 13 chr4 61810753 61811065 -140517282 - AluY SINE Alu -2 309 2 21 36 0 0 chr4 61812845 61812873 -140515474 + AT_rich Low_complexity Low_complexity 1 28 0 1789 190 165 14 chr4 61812961 61813221 -140515126 - MER67D LTR ERV1 0 514 295 1081 86 6 18 chr4 61813221 61813384 -140514963 - L1PA13 LINE L1 -4 6159 5999 1789 190 165 14 chr4 61813384 61813565 -140514782 - MER67D LTR ERV1 -219 295 6 484 210 19 57 chr4 61814637 61814653 -140513694 - L1MA10 LINE L1 -7 6327 6312 5693 229 109 54 chr4 61814653 61814722 -140513625 - L1ME1 LINE L1 -14 6221 6157 1663 130 23 88 chr4 61814722 61815121 -140513226 + THE1C LTR MaLR 1 373 -2 5693 229 109 54 chr4 61815121 61816644 -140511703 - L1ME1 LINE L1 -78 6157 4718 1874 131 107 88 chr4 61816644 61816836 -140511511 + MSTA LTR MaLR 1 188 -240 2128 127 3 0 chr4 61816836 61817144 -140511203 - AluSc SINE Alu 0 309 1 1874 131 107 88 chr4 61817144 61817371 -140510976 + MSTA LTR MaLR 188 428 0 5693 229 109 54 chr4 61817371 61817561 -140510786 - L1ME1 LINE L1 -1517 4718 4540 201 39 0 0 chr4 61817561 61817587 -140510760 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1706 144 4 18 chr4 61817597 61817875 -140510472 - AluSx SINE Alu -38 274 1 5693 229 109 54 chr4 61817875 61818379 -140509968 - L1ME1 LINE L1 -1703 4532 4057 1956 143 0 0 chr4 61818379 61818685 -140509662 - AluSq SINE Alu 0 306 1 5693 229 109 54 chr4 61818685 61820120 -140508227 - L1ME1 LINE L1 -2178 4057 2702 2189 103 10 0 chr4 61820120 61820421 -140507926 - AluSq SINE Alu -9 304 1 5693 229 109 54 chr4 61820421 61820438 -140507909 - L1ME1 LINE L1 -3533 2702 2687 1821 196 3 17 chr4 61820438 61820791 -140507556 - MER7A DNA MER2_type 0 346 1 5693 229 109 54 chr4 61820791 61820916 -140507431 - L1ME1 LINE L1 -3548 2687 2145 22 0 0 0 chr4 61821535 61821557 -140506790 + AT_rich Low_complexity Low_complexity 1 22 0 274 318 63 40 chr4 61821643 61821769 -140506578 - L3 LINE CR1 -111 1466 1338 24 53 0 0 chr4 61821832 61821870 -140506477 + AT_rich Low_complexity Low_complexity 1 38 0 32 43 0 0 chr4 61822187 61822233 -140506114 + AT_rich Low_complexity Low_complexity 1 46 0 33 66 0 0 chr4 61822271 61822332 -140506015 + AT_rich Low_complexity Low_complexity 1 61 0 331 344 62 19 chr4 61823004 61823164 -140505183 + MIR SINE MIR 33 199 -63 1711 172 3 28 chr4 61823518 61823795 -140504552 + AluJb SINE Alu 1 270 -42 198 0 0 0 chr4 61823795 61823817 -140504530 + (TC)n Simple_repeat Simple_repeat 1 22 0 1711 172 3 28 chr4 61823817 61823859 -140504488 + AluJb SINE Alu 270 312 0 4039 101 34 22 chr4 61823903 61824922 -140503425 - MER11A LTR ERVK 0 1266 1 483 199 25 19 chr4 61824922 61825083 -140503264 + GA-rich Low_complexity Low_complexity 3 164 0 222 286 119 12 chr4 61825355 61825439 -140502908 + L2 LINE L2 2681 2773 -541 206 209 0 0 chr4 61825477 61825520 -140502827 + (TG)n Simple_repeat Simple_repeat 2 44 0 708 195 6 6 chr4 61825611 61825770 -140502577 - L1PB2 LINE L1 -1 6150 5992 24 53 0 0 chr4 61828178 61828216 -140500131 + AT_rich Low_complexity Low_complexity 1 38 0 212 179 0 0 chr4 61828284 61828323 -140500024 + (TA)n Simple_repeat Simple_repeat 1 39 0 295 309 67 24 chr4 61828423 61828588 -140499759 + MLT1J2 LTR MaLR 40 211 -239 8536 165 92 10 chr4 61829092 61831876 -140496471 + L1P5 LINE L1 1 3169 -3693 3323 131 16 60 chr4 61831873 61832614 -140495733 + L1P5 LINE L1 5835 6506 -361 * 247 146 42 0 chr4 61832618 61832666 -140495681 + L1MC4 LINE L1 6652 6701 -1341 370 280 11 11 chr4 61832668 61832843 -140495504 + (TATG)n Simple_repeat Simple_repeat 3 177 0 243 256 79 12 chr4 61834549 61834713 -140493634 + (CCCCAA)n Simple_repeat Simple_repeat 1 175 0 260 322 0 0 chr4 61834780 61834870 -140493477 - L1MC4 LINE L1 -1339 6703 6614 * 270 241 76 0 chr4 61834800 61834879 -140493468 + L1MC4 LINE L1 6614 6698 -1344 244 191 0 0 chr4 61834920 61834967 -140493380 + L1MC4 LINE L1 6652 6698 -1344 207 314 0 0 chr4 61834968 61835054 -140493293 + (TATG)n Simple_repeat Simple_repeat 4 89 0 303 284 0 0 chr4 61835058 61835125 -140493222 + (TG)n Simple_repeat Simple_repeat 1 67 0 498 239 0 0 chr4 61835125 61835259 -140493088 + (TA)n Simple_repeat Simple_repeat 1 134 0 2264 114 45 0 chr4 61835265 61835624 -140492723 + L1PB1 LINE L1 5776 6150 -1 1399 267 70 25 chr4 61836071 61836175 -140492172 + MLT1D LTR MaLR 1 99 -406 2059 141 15 6 chr4 61836175 61836515 -140491832 + MER61A LTR ERV1 1 343 0 1399 267 70 25 chr4 61836515 61836893 -140491454 + MLT1D LTR MaLR 99 505 0 277 143 0 48 chr4 61836914 61836977 -140491370 - L1MC4 LINE L1 -1330 6712 6653 237 294 12 12 chr4 61836987 61837072 -140491275 + (TATG)n Simple_repeat Simple_repeat 4 88 0 344 311 172 34 chr4 61837660 61837869 -140490478 - MIR SINE MIR -17 245 8 246 219 62 21 chr4 61838918 61839014 -140489333 - HAL1 LINE L1 -136 2371 2272 2274 60 0 14 chr4 61839070 61839352 -140488995 - AluY SINE Alu -33 278 1 637 290 88 29 chr4 61840099 61840585 -140487762 - HAL1 LINE L1 -1025 1482 968 233 304 98 11 chr4 61843173 61843265 -140485082 - MIR3 SINE MIR -11 197 98 21 0 0 0 chr4 61843881 61843902 -140484445 + AT_rich Low_complexity Low_complexity 1 21 0 267 31 0 0 chr4 61844027 61844059 -140484288 + (TG)n Simple_repeat Simple_repeat 1 32 0 198 118 0 0 chr4 61844059 61844093 -140484254 + (GA)n Simple_repeat Simple_repeat 1 34 0 21 36 0 0 chr4 61844922 61844950 -140483397 + AT_rich Low_complexity Low_complexity 1 28 0 258 250 167 0 chr4 61845672 61845768 -140482579 + MIR SINE MIR 143 254 -8 330 308 111 60 chr4 61845817 61846051 -140482296 + L2 LINE L2 2650 2895 -419 24 0 0 0 chr4 61846492 61846516 -140481831 + AT_rich Low_complexity Low_complexity 1 24 0 324 209 52 0 chr4 61847845 61847960 -140480387 + (TA)n Simple_repeat Simple_repeat 1 121 0 21 36 0 0 chr4 61848009 61848037 -140480310 + AT_rich Low_complexity Low_complexity 1 28 0 1566 213 73 60 chr4 61848037 61848516 -140479831 - MLT2B1 LTR ERVL -35 485 1 1540 177 80 0 chr4 61849225 61849525 -140478822 + MER47A DNA MER2_type 43 366 0 21 36 0 0 chr4 61851854 61851882 -140476465 + AT_rich Low_complexity Low_complexity 1 28 0 1047 286 30 3 chr4 61852161 61852458 -140475889 + L2 LINE L2 2012 2316 -998 714 311 5 0 chr4 61852460 61852656 -140475691 + MER72 LTR ERV1 1 197 -525 545 277 54 60 chr4 61852726 61852910 -140475437 + MER72 LTR ERV1 242 424 -298 234 314 25 25 chr4 61852908 61852973 -140475374 - LTR26E LTR ERV1 -4 618 554 544 103 31 21 chr4 61852973 61853070 -140475277 + MER4A LTR ERV1 1 98 -566 1732 156 3 24 chr4 61853070 61853423 -140474924 + MER4A LTR ERV1 261 664 0 2436 153 0 93 chr4 61853423 61853938 -140474409 - LTR26B LTR ERV1 -64 467 1 1535 183 55 3 chr4 61853938 61854225 -140474122 + MER72 LTR ERV1 421 722 0 762 273 36 18 chr4 61854248 61854468 -140473879 + L2 LINE L2 2340 2563 -751 1657 153 95 17 chr4 61854468 61854814 -140473533 - LTR49 LTR ERV1 0 595 223 611 281 48 43 chr4 61854914 61855177 -140473170 + L2 LINE L2 2683 2963 -350 3005 218 47 37 chr4 61855177 61855995 -140472352 - LTR1B LTR ERV1 0 826 1 611 281 48 43 chr4 61855995 61856024 -140472323 + L2 LINE L2 2963 2990 -323 3186 195 29 50 chr4 61856087 61856811 -140471536 - MER50 LTR ERV1 -25 709 1 206 345 52 0 chr4 61856908 61857024 -140471323 + L2 LINE L2 3156 3277 -36 258 313 13 20 chr4 61857032 61857182 -140471165 + MER104 DNA Tc2 7 155 -25 2537 167 106 6 chr4 61857182 61857691 -140470656 + LTR49 LTR ERV1 1 560 -35 201 39 0 0 chr4 61858599 61858625 -140469722 + (TTG)n Simple_repeat Simple_repeat 2 27 0 266 358 0 37 chr4 61859189 61859323 -140469024 + L2 LINE L2 3185 3313 0 2596 48 0 0 chr4 61859400 61859711 -140468636 + AluY SINE Alu 1 311 0 541 319 59 78 chr4 61859762 61860344 -140468003 + L2 LINE L2 2550 3124 -189 1953 181 83 44 chr4 61860364 61860547 -140467800 + L1MA3 LINE L1 2264 2438 -3708 2021 112 0 60 chr4 61860547 61860861 -140467486 + AluSx SINE Alu 1 295 -17 1953 181 83 44 chr4 61860861 61861217 -140467130 + L1MA3 LINE L1 2438 2824 -3322 * 6375 161 8 9 chr4 61861209 61862342 -140466005 + L1MA3 LINE L1 4536 5671 -634 1941 144 7 7 chr4 61862342 61862640 -140465707 + AluSg SINE Alu 3 300 -10 6375 161 8 9 chr4 61862640 61863275 -140465072 + L1MA3 LINE L1 5671 6305 0 1090 271 125 33 chr4 61863490 61863977 -140464370 - MLT1F1 LTR MaLR -32 510 1 447 333 61 13 chr4 61864579 61864807 -140463540 - MIR SINE MIR -12 250 12 2345 107 0 3 chr4 61865318 61865627 -140462720 - AluSx SINE Alu -2 310 3 297 0 0 0 chr4 61866619 61866652 -140461695 + (CA)n Simple_repeat Simple_repeat 2 34 0 530 316 106 32 chr4 61867559 61867907 -140460440 - L2 LINE L2 -9 3304 2931 1684 185 55 39 chr4 61868029 61868413 -140459934 + MLT1B LTR MaLR 1 390 0 568 303 56 25 chr4 61869542 61869740 -140458607 - MIR SINE MIR -56 206 3 8655 27 0 0 chr4 61869957 61871751 -140456596 - L1PA2 LINE L1 0 6155 4362 270 338 106 48 chr4 61871757 61872218 -140456129 + LTR33 LTR ERVL 34 521 0 215 100 50 0 chr4 61872386 61872426 -140455921 + A-rich Low_complexity Low_complexity 2 43 0 1195 223 4 27 chr4 61872533 61872789 -140455558 + AluJb SINE Alu 44 293 -19 219 300 43 0 chr4 61875155 61875225 -140453122 + MIR SINE MIR 62 134 -74 601 336 42 0 chr4 61875229 61875470 -140452877 + MIR SINE MIR 3 253 -9 22 35 0 0 chr4 61875496 61875525 -140452822 + AT_rich Low_complexity Low_complexity 1 29 0 213 108 0 0 chr4 61876065 61876102 -140452245 + (GA)n Simple_repeat Simple_repeat 2 38 0 3376 172 18 38 chr4 61876103 61876147 -140452200 - L1MB2 LINE L1 -5 6166 6123 1149 210 120 11 chr4 61876147 61876414 -140451933 - AluJo SINE Alu -4 298 3 3376 172 18 38 chr4 61876414 61877101 -140451246 - L1MB2 LINE L1 -48 6123 5450 229 399 14 29 chr4 61877124 61877262 -140451085 + L2 LINE L2 3137 3272 0 201 330 136 0 chr4 61878589 61878707 -140449640 - MIR SINE MIR -12 250 117 411 327 42 33 chr4 61879236 61879450 -140448897 + L2 LINE L2 2625 2840 -474 1423 204 10 52 chr4 61880740 61881048 -140447299 - AluJb SINE Alu -4 298 4 2040 112 13 19 chr4 61881778 61882091 -140446256 + AluSx SINE Alu 1 311 -1 182 318 9 64 chr4 61883122 61883232 -140445115 + L2 LINE L2 3186 3289 -24 245 254 15 15 chr4 61883656 61883723 -140444624 + (TG)n Simple_repeat Simple_repeat 1 67 0 5350 58 1 9 chr4 61884090 61884775 -140443572 + L1PA6 LINE L1 5474 6153 -1 352 247 182 32 chr4 61885205 61885359 -140442988 + MER5A DNA MER1_type 13 189 0 200 318 45 53 chr4 61885543 61885675 -140442672 - MIR SINE MIR -112 150 20 4177 184 13 30 chr4 61885924 61886764 -140441583 + LTR1B LTR ERV1 1 826 0 2065 148 0 0 chr4 61886831 61887136 -140441211 + AluSx SINE Alu 1 305 -7 970 18 0 0 chr4 61887278 61887392 -140440955 + L1PA4 LINE L1 6039 6152 -3 30 0 0 0 chr4 61887667 61887697 -140440650 + AT_rich Low_complexity Low_complexity 1 30 0 31 0 0 0 chr4 61888489 61888520 -140439827 + AT_rich Low_complexity Low_complexity 1 31 0 1625 166 52 83 chr4 61889374 61889760 -140438587 + MLT1A2 LTR MaLR 1 374 0 228 35 0 0 chr4 61891126 61891155 -140437192 + (CAA)n Simple_repeat Simple_repeat 2 30 0 27 81 0 0 chr4 61891262 61891324 -140437023 + AT_rich Low_complexity Low_complexity 1 62 0 690 215 7 0 chr4 61891805 61891954 -140436393 - MER96B DNA MER1_type? -5 412 263 1650 203 182 108 chr4 61892107 61892679 -140435668 - MLT1E2 LTR MaLR -1 625 1 693 293 95 6 chr4 61894145 61894493 -140433854 + L1ME1 LINE L1 5696 6074 -92 306 73 0 0 chr4 61894543 61894584 -140433763 + (TA)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr4 61896323 61896344 -140432003 + AT_rich Low_complexity Low_complexity 1 21 0 1644 185 19 6 chr4 61896836 61897150 -140431197 + L1MC3 LINE L1 5460 5777 -2008 1030 216 168 17 chr4 61897153 61897510 -140430837 + L1MC3 LINE L1 5865 6275 -1510 2139 160 25 55 chr4 61897510 61897947 -140430400 + LOR1b LTR ERV1 1 424 -37 2244 214 48 19 chr4 61898005 61898574 -140429773 + L1MC3 LINE L1 6283 6867 -918 2464 264 25 28 chr4 61898575 61899493 -140428854 + L1MC1 LINE L1 4034 4948 -1198 1334 218 30 40 chr4 61899527 61899899 -140428448 + L1 LINE L1 4727 5094 -1052 565 203 0 0 chr4 61899907 61900035 -140428312 - L1PA16 LINE L1 0 6166 6039 2980 148 69 39 chr4 61900035 61900456 -140427891 + MER41C LTR ERV1 5 447 -107 3643 55 0 4 chr4 61900456 61900912 -140427435 - L1PA7 LINE L1 -8 6146 5693 2980 148 69 39 chr4 61900912 61901024 -140427323 + MER41C LTR ERV1 447 554 0 5170 192 27 29 chr4 61901138 61901731 -140426616 + L1MC1 LINE L1 4978 5570 -763 2233 111 0 3 chr4 61901731 61902028 -140426319 - AluSx SINE Alu -14 298 3 5170 192 27 29 chr4 61902028 61902793 -140425554 + L1MC1 LINE L1 5570 6333 0 4236 199 42 2 chr4 61902775 61903663 -140424684 + L1MC3 LINE L1 6843 7765 -20 * 26 50 0 0 chr4 61904503 61904543 -140423804 + AT_rich Low_complexity Low_complexity 1 40 0 794 249 123 76 chr4 61904676 61905231 -140423116 - MER34C LTR ERV1 -4 581 1 3546 172 57 15 chr4 61906153 61906823 -140421524 + MER50 LTR ERV1 14 711 -23 732 331 68 3 chr4 61907897 61908190 -140420157 + LTR16A LTR ERVL 130 441 -9 616 204 75 166 chr4 61908390 61908801 -140419546 + MLT1A2 LTR MaLR 1 374 0 343 347 41 7 chr4 61909247 61909394 -140418953 - L2 LINE L2 -263 3050 2899 773 314 190 39 chr4 61909643 61910354 -140417993 - L2 LINE L2 -555 2759 1942 2095 146 36 25 chr4 61910515 61910872 -140417475 + THE1B LTR MaLR 1 361 -3 7223 115 30 0 chr4 61910872 61911923 -140416424 + THE1B-int LTR MaLR 7 1088 -492 7491 138 24 0 chr4 61911933 61913059 -140415288 + THE1B-int LTR MaLR 427 1579 -1 2205 133 48 14 chr4 61913060 61913412 -140414935 + THE1B LTR MaLR 1 364 0 375 286 24 8 chr4 61913695 61913821 -140414526 + MIR SINE MIR 114 241 -21 190 242 32 32 chr4 61914090 61914152 -140414195 + MER5B DNA MER1_type 4 65 -113 199 313 60 44 chr4 61914296 61914478 -140413869 - L3b LINE CR1 -198 1385 1201 24 32 0 0 chr4 61914913 61914944 -140413403 + AT_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr4 61915354 61915374 -140412973 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 335 205 149 90 chr4 61916014 61916116 -140412231 + LTR37B LTR ERV1 120 215 -253 1793 105 3 123 chr4 61916116 61916467 -140411880 + AluSx SINE Alu 1 309 -3 335 205 149 90 chr4 61916467 61916652 -140411695 + LTR37B LTR ERV1 215 424 -44 25 0 0 0 chr4 61917472 61917497 -140410850 + AT_rich Low_complexity Low_complexity 1 25 0 264 277 191 11 chr4 61918209 61918303 -140410044 + MIR SINE MIR 37 147 -61 2448 47 3 7 chr4 61919024 61919321 -140409026 - AluY SINE Alu -15 296 1 270 233 67 0 chr4 61919365 61919425 -140408922 - L2 LINE L2 -60 3253 3190 21 0 0 0 chr4 61919687 61919708 -140408639 + AT_rich Low_complexity Low_complexity 1 21 0 284 348 94 11 chr4 61920021 61920202 -140408145 + MIR SINE MIR 49 244 -18 36 40 0 0 chr4 61920477 61920527 -140407820 + AT_rich Low_complexity Low_complexity 1 50 0 30 69 0 0 chr4 61920742 61920800 -140407547 + AT_rich Low_complexity Low_complexity 1 58 0 321 82 0 0 chr4 61920803 61920852 -140407495 + (TA)n Simple_repeat Simple_repeat 1 49 0 1287 221 33 58 chr4 61921774 61921903 -140406444 + MER31B LTR ERV1 4 135 -331 2141 138 31 8 chr4 61921903 61922259 -140406088 + THE1B LTR MaLR 1 364 0 9812 133 13 30 chr4 61922259 61923866 -140404481 + THE1B-int LTR MaLR 1 1580 0 1895 163 24 51 chr4 61923866 61924240 -140404107 + THE1B LTR MaLR 1 364 0 1287 221 33 58 chr4 61924240 61924470 -140403877 + MER31B LTR ERV1 132 356 -110 543 277 0 7 chr4 61924583 61924731 -140403616 - MER101 LTR ERV1 -95 379 233 * 1451 179 16 46 chr4 61924719 61925026 -140403321 - MER101B LTR ERV1 -272 298 1 356 239 55 9 chr4 61925026 61925135 -140403212 + MER31B LTR ERV1 353 466 0 27 29 0 0 chr4 61925217 61925251 -140403096 + AT_rich Low_complexity Low_complexity 1 34 0 320 171 34 17 chr4 61925395 61925570 -140402777 + (TA)n Simple_repeat Simple_repeat 1 178 0 24 32 0 0 chr4 61925851 61925882 -140402465 + AT_rich Low_complexity Low_complexity 1 31 0 1729 170 0 17 chr4 61925887 61926181 -140402166 - AluJb SINE Alu -15 297 9 21 36 0 0 chr4 61928208 61928236 -140400111 + AT_rich Low_complexity Low_complexity 1 28 0 199 244 11 11 chr4 61929011 61929101 -140399246 + CT-rich Low_complexity Low_complexity 1 90 0 37 52 0 0 chr4 61929251 61929309 -140399038 + AT_rich Low_complexity Low_complexity 1 58 0 298 267 95 16 chr4 61931891 61932097 -140396250 + L1MCa LINE L1 1181 1605 -5002 239 291 50 50 chr4 61932119 61932199 -140396148 + L1MCa LINE L1 1503 1585 -4841 665 254 48 22 chr4 61932199 61932427 -140395920 - MER106A DNA MER1_type -2 234 1 239 291 50 50 chr4 61932427 61932487 -140395860 + L1MCa LINE L1 1584 1643 -4783 2041 97 33 6 chr4 61932488 61932877 -140395470 - LTR7 LTR ERV1 0 450 1 3373 121 8 44 chr4 61932877 61933463 -140394884 - HERVH LTR ERV1 0 7713 7149 2515 131 7 9 chr4 61933444 61933872 -140394475 - HERVH LTR ERV1 -1697 6016 5590 * 3148 132 27 0 chr4 61933863 61934340 -140394007 - HERVH LTR ERV1 -2564 5149 4660 * 3170 125 5 107 chr4 61934331 61934957 -140393390 - HERVH LTR ERV1 -3346 4367 3806 2726 165 0 2 chr4 61934951 61935400 -140392947 - HERVH LTR ERV1 -4126 3587 3140 * 11337 118 15 43 chr4 61935379 61937290 -140391057 - HERVH LTR ERV1 -4718 2995 1139 1019 65 0 0 chr4 61937290 61937414 -140390933 + AluY SINE Alu 167 290 -21 470 277 23 15 chr4 61938019 61938149 -140390198 - MLT1F1 LTR MaLR -54 513 383 455 216 70 36 chr4 61938265 61938460 -140389887 - MLT1F1 LTR MaLR -342 212 1 496 333 69 25 chr4 61938466 61938872 -140389475 - L1ME LINE L1 -4930 1612 1189 259 146 44 15 chr4 61939026 61939163 -140389184 + (TA)n Simple_repeat Simple_repeat 2 142 0 223 88 44 44 chr4 61939336 61939427 -140388920 + (TA)n Simple_repeat Simple_repeat 1 91 0 252 341 23 0 chr4 61940030 61940159 -140388188 - L1ME LINE L1 -5936 698 567 30 69 0 0 chr4 61940752 61940810 -140387537 + AT_rich Low_complexity Low_complexity 1 58 0 381 369 119 25 chr4 61941070 61941514 -140386833 + L2 LINE L2 2828 3313 0 22 56 0 0 chr4 61941590 61941626 -140386721 + AT_rich Low_complexity Low_complexity 1 36 0 396 239 70 33 chr4 61941779 61941916 -140386431 + MIR SINE MIR 33 172 -66 257 295 22 79 chr4 61942097 61942236 -140386111 - L3b LINE CR1 -268 1315 1185 320 295 43 14 chr4 61943064 61943203 -140385144 - MER90 LTR ERV1 -18 596 454 227 348 11 0 chr4 61943247 61943339 -140385008 - MER90 LTR ERV1 -237 338 246 777 206 34 111 chr4 61943440 61943702 -140384645 - LTR65 LTR ERV1 -261 408 167 22 0 0 0 chr4 61943780 61943802 -140384545 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr4 61943826 61943869 -140384478 + AT_rich Low_complexity Low_complexity 1 43 0 201 178 0 22 chr4 61943999 61944044 -140384303 + T-rich Low_complexity Low_complexity 2 45 0 297 68 0 0 chr4 61944120 61944164 -140384183 + (A)n Simple_repeat Simple_repeat 1 44 0 26 30 0 0 chr4 61944698 61944731 -140383616 + AT_rich Low_complexity Low_complexity 1 33 0 26 50 0 0 chr4 61944743 61944783 -140383564 + AT_rich Low_complexity Low_complexity 1 40 0 15899 73 9 4 chr4 61945108 61947309 -140381038 + L1P LINE L1 2398 4611 -1535 20669 89 5 9 chr4 61947413 61952019 -140376328 + HERV9 LTR ERV1 268 4943 -3456 1708 232 118 41 chr4 61952019 61952631 -140375716 - LTR1B LTR ERV1 -167 659 1 25 0 0 0 chr4 61952834 61952859 -140375488 + AT_rich Low_complexity Low_complexity 1 25 0 444 273 19 93 chr4 61953130 61953335 -140375012 - L2 LINE L2 -1 3312 3123 254 330 107 0 chr4 61953335 61953438 -140374909 - L2 LINE L2 -3 3310 3197 868 188 135 28 chr4 61953745 61954033 -140374314 - MER33 DNA MER1_type 0 324 6 213 39 0 0 chr4 61954091 61954117 -140374230 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 183 80 0 0 chr4 61954407 61954432 -140373915 + (T)n Simple_repeat Simple_repeat 1 25 0 1463 223 70 46 chr4 61956377 61956897 -140371450 - L1MD2 LINE L1 -13 6346 5811 * 1488 237 69 36 chr4 61956896 61957478 -140370869 - L1MDb LINE L1 -4987 1556 956 2514 194 24 8 chr4 61957915 61958416 -140369931 - LTR22 LTR ERVK 0 509 1 240 281 16 16 chr4 61958540 61958604 -140369743 - L1MDb LINE L1 -5671 869 806 1507 256 92 33 chr4 61958802 61959345 -140369002 + MLT1E2 LTR MaLR 28 602 -24 213 39 0 0 chr4 61959737 61959763 -140368584 + (TG)n Simple_repeat Simple_repeat 1 26 0 443 282 28 28 chr4 61959818 61959960 -140368387 - L1MDb LINE L1 -6267 273 132 493 193 143 21 chr4 61959964 61960104 -140368243 + MLT2B1 LTR ERVL 2 158 -362 404 198 0 55 chr4 61962027 61962118 -140366229 + AluJb SINE Alu 213 298 -4 22 35 0 0 chr4 61962135 61962164 -140366183 + AT_rich Low_complexity Low_complexity 1 29 0 371 269 34 17 chr4 61962170 61962289 -140366058 + L1P LINE L1 4883 5003 -1143 25 31 0 0 chr4 61962369 61962401 -140365946 + AT_rich Low_complexity Low_complexity 1 32 0 22 80 0 0 chr4 61962428 61962478 -140365869 + AT_rich Low_complexity Low_complexity 1 50 0 34 65 0 0 chr4 61963034 61963096 -140365251 + AT_rich Low_complexity Low_complexity 1 62 0 433 315 49 25 chr4 61963582 61963785 -140364562 - L1MD2 LINE L1 -478 5692 5485 22 0 0 0 chr4 61963798 61963820 -140364527 + AT_rich Low_complexity Low_complexity 1 22 0 535 113 0 0 chr4 61963916 61963996 -140364351 + MADE1 DNA Mariner 1 80 0 225 204 87 68 chr4 61964107 61964210 -140364137 + MLT1H LTR MaLR 392 496 -53 429 278 89 16 chr4 61964326 61964517 -140363830 - L1MD2 LINE L1 -693 5471 5267 435 336 78 22 chr4 61964631 61964988 -140363359 - L1MD2 LINE L1 -919 5227 4851 450 0 0 0 chr4 61966824 61966874 -140361473 + (TA)n Simple_repeat Simple_repeat 1 50 0 253 165 13 13 chr4 61968339 61968418 -140359929 + (TA)n Simple_repeat Simple_repeat 2 80 0 302 214 28 0 chr4 61968451 61968596 -140359751 + (TA)n Simple_repeat Simple_repeat 2 150 0 274 191 44 0 chr4 61968596 61968664 -140359683 - MER4-int LTR ERV1 -5417 1181 1111 297 289 37 27 chr4 61969619 61969806 -140358541 + L1M4 LINE L1 3707 3895 -2251 1928 142 7 14 chr4 61969831 61970126 -140358221 + AluSq SINE Alu 1 293 -20 245 0 89 0 chr4 61970128 61970173 -140358174 + (TA)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr4 61970267 61970288 -140358059 + AT_rich Low_complexity Low_complexity 1 21 0 2378 74 3 0 chr4 61970299 61970609 -140357738 + AluY SINE Alu 1 311 0 13264 66 10 4 chr4 61970746 61972543 -140355804 + L1P LINE L1 2943 4750 -1396 201 279 0 70 chr4 61972547 61972633 -140355714 - MER5A DNA MER1_type -21 168 89 370 277 111 5 chr4 61972669 61972836 -140355511 + MLT1J LTR MaLR 9 220 -189 212 0 36 0 chr4 61972836 61972864 -140355483 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 370 277 111 5 chr4 61972864 61972945 -140355402 + MLT1J LTR MaLR 220 291 -118 29 28 0 0 chr4 61972990 61973026 -140355321 + AT_rich Low_complexity Low_complexity 1 36 0 250 309 219 4 chr4 61973240 61973496 -140354851 - L2 LINE L2 -1294 2020 1710 317 308 100 42 chr4 61973529 61973649 -140354698 + MER5B DNA MER1_type 7 133 -45 265 370 112 42 chr4 61973703 61974330 -140354017 - L2 LINE L2 -1641 1673 1003 1620 141 88 41 chr4 61974552 61974892 -140353455 + THE1C LTR MaLR 20 375 0 9177 140 57 5 chr4 61974896 61976393 -140351954 + THE1C-int LTR MaLR 5 1580 0 1614 138 65 57 chr4 61976393 61976764 -140351583 + THE1C LTR MaLR 1 374 -1 208 434 35 0 chr4 61976885 61977088 -140351259 - L2 LINE L2 -2686 628 419 260 254 18 18 chr4 61977732 61977846 -140350501 + (TTA)n Simple_repeat Simple_repeat 1 114 0 288 218 32 139 chr4 61978063 61978279 -140350068 - LTR41 LTR ERVL -29 744 552 296 235 66 133 chr4 61978452 61978754 -140349593 - LTR41 LTR ERVL -491 282 1 23 54 0 0 chr4 61981071 61981108 -140347239 + AT_rich Low_complexity Low_complexity 1 37 0 31 0 0 0 chr4 61981313 61981344 -140347003 + AT_rich Low_complexity Low_complexity 1 31 0 270 284 102 0 chr4 61981390 61981517 -140346830 - MIR SINE MIR -3 259 120 27 49 0 0 chr4 61981568 61981609 -140346738 + AT_rich Low_complexity Low_complexity 1 41 0 22 56 0 0 chr4 61982926 61982962 -140345385 + AT_rich Low_complexity Low_complexity 1 36 0 538 286 92 24 chr4 61983168 61983374 -140344973 - MIR SINE MIR -26 236 17 357 24 0 0 chr4 61983484 61983526 -140344821 + (TG)n Simple_repeat Simple_repeat 1 42 0 29 78 0 0 chr4 61984378 61984442 -140343905 + AT_rich Low_complexity Low_complexity 1 64 0 622 301 34 6 chr4 61984612 61984788 -140343559 - MER5A DNA MER1_type 0 189 9 263 319 80 33 chr4 61984796 61984992 -140343355 + MIR SINE MIR 40 242 -20 22 35 0 0 chr4 61985402 61985431 -140342916 + AT_rich Low_complexity Low_complexity 1 29 0 403 190 107 58 chr4 61987225 61987346 -140341001 + MLT2F LTR ERVL 3 129 -534 * 879 266 68 4 chr4 61987344 61987592 -140340755 + MLT2F LTR ERVL 357 620 -43 2248 140 25 3 chr4 61987753 61988109 -140340238 + THE1B LTR MaLR 1 364 0 1595 99 77 15 chr4 61988109 61988389 -140339958 + THE1B-int LTR MaLR 1 236 -1344 2569 99 6 3 chr4 61988389 61988743 -140339604 - THE1A LTR MaLR 0 355 1 1595 99 77 15 chr4 61988743 61988849 -140339498 + THE1B-int LTR MaLR 236 334 -1246 * 6143 153 5 11 chr4 61988848 61989803 -140338544 + THE1B-int LTR MaLR 626 1574 -6 2005 137 8 84 chr4 61989808 61990202 -140338145 + THE1B LTR MaLR 1 364 0 6853 191 165 37 chr4 61990262 61991792 -140336555 - MER52A LTR ERV1 -29 1726 1 1218 318 81 17 chr4 61991799 61992673 -140335674 + ERVL LTR ERVL 299 1328 -4436 1713 159 30 0 chr4 61992960 61993231 -140335116 - AluSx SINE Alu -33 279 1 2113 310 43 22 chr4 61993419 61994431 -140333916 + ERVL LTR ERVL 1330 2344 -3141 228 147 0 0 chr4 61994431 61994465 -140333882 - MLT1D LTR MaLR -69 436 403 4207 184 63 24 chr4 61994521 61995133 -140333214 + MER21B LTR ERV1 1 655 -208 3405 99 101 0 chr4 61995133 61995636 -140332711 - MER41A LTR ERV1 0 554 1 4207 184 63 24 chr4 61995636 61995853 -140332494 + MER21B LTR ERV1 655 862 -1 1534 263 85 44 chr4 61995920 61996453 -140331894 + MLT1F1 LTR MaLR 10 567 0 202 165 63 0 chr4 61997105 61997184 -140331163 + (TA)n Simple_repeat Simple_repeat 2 85 0 1393 323 125 23 chr4 61997266 61998359 -140329988 - L2 LINE L2 -6 3307 2095 213 335 92 6 chr4 61998776 61998940 -140329407 - MIR SINE MIR -42 220 43 22 35 0 0 chr4 61999505 61999534 -140328813 + AT_rich Low_complexity Low_complexity 1 29 0 516 327 32 44 chr4 61999639 61999890 -140328457 + L2 LINE L2 2100 2347 -967 1740 187 10 31 chr4 61999890 62000542 -140327805 + L1M2 LINE L1 4955 5599 -713 2969 189 16 2 chr4 62001240 62001810 -140326537 - L1PA16 LINE L1 -16 6853 6276 2080 173 56 35 chr4 62001810 62002329 -140326018 + MLT2A2 LTR ERVL 2 554 0 3946 193 45 42 chr4 62002329 62002568 -140325779 - L1PA16 LINE L1 -588 6281 6044 2334 93 0 6 chr4 62002568 62002879 -140325468 + AluY SINE Alu 1 309 -2 3946 193 45 42 chr4 62002879 62003806 -140324541 - L1PA16 LINE L1 -825 6044 5095 207 69 0 0 chr4 62003806 62003835 -140324512 + (TG)n Simple_repeat Simple_repeat 2 30 0 3946 193 45 42 chr4 62003835 62003974 -140324373 - L1PA16 LINE L1 -1774 5095 4958 180 0 0 0 chr4 62003980 62004000 -140324347 + (TTTTTA)n Simple_repeat Simple_repeat 3 22 0 7612 27 33 0 chr4 62004001 62005129 -140323218 - L1PA3 LINE L1 -3 6152 4967 * 10062 38 12 1 chr4 62005123 62006380 -140321967 + L1P LINE L1 2801 4071 -2075 8343 245 19 22 chr4 62006385 62009888 -140318459 - L1PA16 LINE L1 -1881 4968 1427 797 239 27 0 chr4 62010165 62010353 -140317994 - L1PA16 LINE L1 -5322 1528 1336 * 2834 206 17 8 chr4 62010339 62010874 -140317473 - L1PA16 LINE L1 -5286 1563 1024 1337 225 68 3 chr4 62010905 62011230 -140317117 - MER7A DNA MER2_type -1 345 2 1301 170 17 21 chr4 62011235 62011523 -140316824 - L1MB2 LINE L1 -6 6165 5879 4740 115 11 3 chr4 62011523 62012220 -140316127 - L1PA8 LINE L1 -6 6481 5773 22760 159 21 51 chr4 62012324 62018026 -140310321 - L1PA8 LINE L1 -853 5608 11 3137 226 37 33 chr4 62018022 62018128 -140310219 - L1MB2 LINE L1 -279 5892 5788 * 3134 116 9 0 chr4 62018128 62018577 -140309770 + MLT2A2 LTR ERVL 1 453 0 3137 226 37 33 chr4 62018577 62019222 -140309125 - L1MB2 LINE L1 -383 5788 5147 7443 32 1 0 chr4 62019222 62020865 -140307482 - L1PA3 LINE L1 -3 6152 4516 3137 226 37 33 chr4 62020865 62021596 -140306751 - L1MB2 LINE L1 -1024 5147 4405 2540 197 30 4 chr4 62022286 62022784 -140305563 + L1P LINE L1 11 521 -5625 3389 91 0 61 chr4 62022794 62023353 -140304994 + L1P LINE L1 1869 2393 -3753 33358 92 10 3 chr4 62023353 62027994 -140300353 + L1P LINE L1 1 4676 -1470 2027 121 39 0 chr4 62028417 62028698 -140299649 + AluSp SINE Alu 3 294 -19 283 288 98 50 chr4 62029624 62030104 -140298243 - L1ME LINE L1 -303 5818 5316 348 300 113 58 chr4 62030278 62030678 -140297669 - L1ME LINE L1 -1095 5051 4630 2043 117 35 0 chr4 62031067 62031357 -140296990 + AluSx SINE Alu 1 300 -12 299 336 7 7 chr4 62031359 62031496 -140296851 - L1ME LINE L1 -1943 4203 4067 315 0 0 0 chr4 62031531 62031566 -140296781 + (T)n Simple_repeat Simple_repeat 1 35 0 954 169 19 10 chr4 62031686 62031893 -140296454 - L1 LINE L1 -1542 4604 4396 1550 270 66 19 chr4 62032637 62033104 -140295243 + MLT1E2 LTR MaLR 138 626 0 2168 118 0 7 chr4 62034497 62034801 -140293546 - AluSx SINE Alu -10 302 1 22 35 0 0 chr4 62035625 62035654 -140292693 + AT_rich Low_complexity Low_complexity 1 29 0 395 183 35 7 chr4 62035657 62035762 -140292585 - MER6B DNA MER2_type 0 210 98 1343 140 5 0 chr4 62035762 62035962 -140292385 + AluSp SINE Alu 108 308 -5 497 227 0 0 chr4 62035968 62036065 -140292282 - MER6B DNA MER2_type -169 107 11 260 270 0 0 chr4 62036113 62036176 -140292171 - MIR SINE MIR -61 147 91 1181 176 35 9 chr4 62036183 62036410 -140291937 - MLT1A1 LTR MaLR 0 365 133 732 249 127 5 chr4 62036422 62036619 -140291728 - MLT1D LTR MaLR -135 370 150 5596 209 33 60 chr4 62036640 62038235 -140290112 + L1M2 LINE L1 1155 2706 -4143 1865 186 19 27 chr4 62038234 62038610 -140289737 + L1MA5 LINE L1 5607 5979 -321 * 32637 55 1 23 chr4 62038603 62042863 -140285484 - L1P LINE L1 -1981 4165 1 9229 43 0 1 chr4 62042860 62044039 -140284308 + L1PA4 LINE L1 4248 5425 -730 * 3929 51 0 0 chr4 62044154 62044642 -140283705 + L1PA4 LINE L1 5660 6147 -8 1725 171 9 6 chr4 62044652 62044985 -140283362 + L1MA5 LINE L1 5966 6299 -1 30 45 0 0 chr4 62045119 62045163 -140283184 + AT_rich Low_complexity Low_complexity 1 44 0 8027 57 4 3 chr4 62045546 62047357 -140280990 + L1PA5 LINE L1 4344 6154 0 1568 202 42 46 chr4 62048011 62048428 -140279919 + MLT2C1 LTR ERVL 1 520 0 359 277 9 18 chr4 62048857 62048969 -140279378 + MER117 DNA MER1_type 12 122 -75 849 152 140 0 chr4 62049149 62049327 -140279020 - L1MA8 LINE L1 -334 5957 5755 365 101 43 0 chr4 62049327 62049396 -140278951 + L1MA7 LINE L1 6220 6291 0 267 333 83 8 chr4 62049619 62049751 -140278596 + L2 LINE L2 3171 3312 -1 1958 140 0 31 chr4 62050107 62050309 -140278038 - AluSx SINE Alu 0 310 119 2290 100 3 0 chr4 62050309 62050610 -140277737 - AluSq SINE Alu -11 302 1 1958 140 0 31 chr4 62050610 62050726 -140277621 - AluSx SINE Alu -191 119 1 681 270 79 83 chr4 62050752 62051159 -140277188 + LTR68 LTR ERV1 45 449 -291 186 43 0 0 chr4 62052500 62052523 -140275824 + (CAT)n Simple_repeat Simple_repeat 1 23 0 317 319 113 0 chr4 62052553 62052713 -140275634 + L1ME LINE L1 5508 5685 -436 181 176 20 20 chr4 62052939 62052990 -140275357 + CT-rich Low_complexity Low_complexity 1 51 0 299 130 19 0 chr4 62053024 62053078 -140275269 + CT-rich Low_complexity Low_complexity 4 58 0 221 271 0 0 chr4 62053502 62053564 -140274783 + (TA)n Simple_repeat Simple_repeat 1 62 0 26 50 0 0 chr4 62054146 62054186 -140274161 + AT_rich Low_complexity Low_complexity 1 40 0 245 291 34 60 chr4 62055555 62055598 -140272749 - L2 LINE L2 0 3313 3270 1717 166 54 35 chr4 62055598 62055966 -140272381 + THE1C LTR MaLR 1 375 0 245 291 34 60 chr4 62055966 62056039 -140272308 - L2 LINE L2 -43 3270 3200 262 190 35 0 chr4 62057877 62057935 -140270412 + MIR3 SINE MIR 149 208 0 2293 109 0 3 chr4 62059046 62059357 -140268990 - AluSp SINE Alu -3 310 1 305 261 113 74 chr4 62059566 62059823 -140268524 - HAL1 LINE L1 -3 2504 2238 792 302 50 30 chr4 62059972 62060432 -140267915 + L1M4 LINE L1 30 498 -5925 513 284 52 52 chr4 62060762 62061167 -140267180 + L1M4 LINE L1 1123 1527 -4896 494 284 145 26 chr4 62061179 62061746 -140266601 + L1M4 LINE L1 1736 2369 -4753 37 23 0 0 chr4 62061805 62061849 -140266498 + AT_rich Low_complexity Low_complexity 1 44 0 320 333 13 19 chr4 62062970 62063126 -140265221 - L2 LINE L2 -1 3312 3158 680 221 45 91 chr4 62063453 62063514 -140264833 + L1M4 LINE L1 3026 3088 -3853 1831 176 3 13 chr4 62063514 62063826 -140264521 + AluJb SINE Alu 3 311 -1 680 221 45 91 chr4 62063826 62063848 -140264499 + L1M4 LINE L1 3088 3109 -3832 1738 117 151 28 chr4 62063848 62064172 -140264175 - THE1B LTR MaLR 0 364 1 680 221 45 91 chr4 62064172 62064507 -140263840 + L1M4 LINE L1 3109 3426 -3515 447 257 62 35 chr4 62064590 62064878 -140263469 + L1M4 LINE L1 3912 4207 -2734 1860 227 71 53 chr4 62064883 62065491 -140262856 + MLT1E2 LTR MaLR 1 619 -7 895 268 102 53 chr4 62065499 62066178 -140262169 + L1M4 LINE L1 4211 4922 -2019 6021 204 16 3 chr4 62066182 62068298 -140260049 - L1PA14 LINE L1 0 7599 5463 17945 198 38 23 chr4 62068303 62073197 -140255150 - L1PA14 LINE L1 -2610 4974 2 1209 259 48 32 chr4 62073198 62073758 -140254589 + L1M4 LINE L1 4918 5486 -1455 471 228 66 56 chr4 62073801 62073944 -140254403 + L1M4 LINE L1 5933 6073 -876 2313 92 0 10 chr4 62073944 62074258 -140254089 + AluY SINE Alu 1 311 0 471 228 66 56 chr4 62074258 62074399 -140253948 + L1M4 LINE L1 6073 6220 -729 387 0 0 0 chr4 62074445 62074488 -140253859 + (A)n Simple_repeat Simple_repeat 1 43 0 361 352 43 20 chr4 62074621 62074874 -140253473 + L1M4 LINE L1 6273 6531 -442 377 23 0 0 chr4 62075381 62075424 -140252923 + (A)n Simple_repeat Simple_repeat 1 43 0 454 226 0 0 chr4 62075424 62075526 -140252821 + MLT1D LTR MaLR 404 505 0 1496 266 37 34 chr4 62075534 62076101 -140252246 + L1ME2 LINE L1 5455 6023 -141 370 66 0 33 chr4 62076795 62076856 -140251491 - L1MA1 LINE L1 0 6302 6244 1605 201 10 16 chr4 62076974 62077282 -140251065 - AluSx SINE Alu -6 306 1 23 0 0 0 chr4 62077773 62077796 -140250551 + AT_rich Low_complexity Low_complexity 1 23 0 207 100 0 0 chr4 62078232 62078262 -140250085 + (CG)n Simple_repeat Simple_repeat 2 31 0 901 340 129 17 chr4 62078466 62079127 -140249220 + L2 LINE L2 2399 3169 -144 225 0 0 0 chr4 62079127 62079152 -140249195 + (TTG)n Simple_repeat Simple_repeat 3 27 0 901 340 129 17 chr4 62079152 62079297 -140249050 + L2 LINE L2 3169 3296 -17 2239 129 0 19 chr4 62079599 62079962 -140248385 - L1PA16 LINE L1 -9 6157 5802 226 217 0 0 chr4 62079964 62080010 -140248337 + L1MC1 LINE L1 6016 6061 -272 723 290 73 4 chr4 62080739 62080984 -140247363 + MER46C DNA MER2_type 70 331 -7 1108 291 30 77 chr4 62081167 62082059 -140246288 + L2 LINE L2 2325 3165 -148 1230 167 0 31 chr4 62082071 62082299 -140246048 - AluJo SINE Alu -11 301 81 4706 72 6 2 chr4 62082299 62083324 -140245023 - MER11A LTR ERVK 0 1266 1 483 133 13 0 chr4 62083324 62083399 -140244948 - AluJo SINE Alu -226 86 11 207 273 182 0 chr4 62083426 62083514 -140244833 + L2 LINE L2 3158 3261 -52 2110 133 0 0 chr4 62083616 62083916 -140244431 - AluSc SINE Alu -9 300 1 372 78 0 0 chr4 62084845 62084896 -140243451 - MADE1 DNA Mariner -29 51 1 1956 149 14 0 chr4 62085139 62085434 -140242913 - AluSx SINE Alu -13 299 1 23 0 0 0 chr4 62085928 62085951 -140242396 + AT_rich Low_complexity Low_complexity 1 23 0 300 256 128 16 chr4 62086520 62086645 -140241702 - MIR SINE MIR 0 262 124 29 28 0 0 chr4 62086713 62086749 -140241598 + AT_rich Low_complexity Low_complexity 1 36 0 255 284 0 25 chr4 62087142 62087223 -140241124 + CT-rich Low_complexity Low_complexity 1 79 0 542 364 87 40 chr4 62087631 62088441 -140239906 - L2 LINE L2 0 3313 2459 222 365 55 20 chr4 62088446 62088646 -140239701 - L2 LINE L2 -1071 2243 2037 25 65 0 0 chr4 62089492 62089538 -140238809 + AT_rich Low_complexity Low_complexity 1 46 0 2533 55 0 3 chr4 62090701 62091010 -140237337 - AluY SINE Alu -3 308 1 24 0 0 0 chr4 62091302 62091326 -140237021 + AT_rich Low_complexity Low_complexity 1 24 0 199 179 36 27 chr4 62091688 62091800 -140236547 + (TA)n Simple_repeat Simple_repeat 2 114 0 24 85 0 0 chr4 62094336 62094395 -140233952 + AT_rich Low_complexity Low_complexity 1 59 0 274 369 56 6 chr4 62094852 62095031 -140233316 + MIR SINE MIR 66 253 -9 189 195 0 0 chr4 62095160 62095201 -140233146 + (TA)n Simple_repeat Simple_repeat 2 42 0 1315 208 4 4 chr4 62095362 62095617 -140232730 - AluJb SINE Alu -15 297 43 23 54 0 0 chr4 62096112 62096149 -140232198 + AT_rich Low_complexity Low_complexity 1 37 0 4249 165 61 14 chr4 62096231 62097020 -140231327 - LTR1B LTR ERV1 0 826 1 602 266 28 24 chr4 62097739 62097919 -140230428 + MIR SINE MIR 38 218 -44 260 277 130 43 chr4 62097878 62098062 -140230285 - MIR SINE MIR -56 206 7 * 374 323 140 36 chr4 62098452 62098817 -140229530 + L2 LINE L2 2569 2971 -343 23024 115 38 32 chr4 62098918 62105715 -140222632 + HERV17 LTR ERV1 17 4980 0 574 127 35 81 chr4 62105715 62105906 -140222441 + HERV17 LTR ERV1 719 900 -7726 6488 131 62 87 chr4 62105904 62106224 -140222123 + HERV17 LTR ERV1 142 468 -1970 2372 71 7 10 chr4 62106224 62106534 -140221813 + AluY SINE Alu 3 311 0 6488 131 62 87 chr4 62106534 62108603 -140219744 + HERV17 LTR ERV1 468 2438 0 189 0 0 0 chr4 62109533 62109554 -140218793 + (T)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr4 62110742 62110765 -140217582 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 62111215 62111237 -140217110 + AT_rich Low_complexity Low_complexity 1 22 0 1097 165 117 102 chr4 62111558 62112049 -140216298 - MER4A LTR ERV1 -22 443 2 601 143 56 0 chr4 62112572 62112698 -140215649 + MER53 DNA DNA 13 145 -44 385 262 8 0 chr4 62112708 62112830 -140215517 - MER53 DNA DNA -65 124 2 33 0 0 0 chr4 62112971 62113004 -140215343 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr4 62113677 62113709 -140214638 + AT_rich Low_complexity Low_complexity 1 32 0 804 258 72 24 chr4 62114088 62114379 -140213968 - L1MB8 LINE L1 0 6178 5874 1943 138 0 52 chr4 62115877 62116204 -140212143 + AluSx SINE Alu 1 310 -2 1808 94 0 0 chr4 62117678 62117946 -140210401 - AluSx SINE Alu 0 318 51 826 58 0 0 chr4 62117975 62118079 -140210268 + AluYb8 SINE Alu 1 104 -214 21 57 0 0 chr4 62118179 62118214 -140210133 + AT_rich Low_complexity Low_complexity 1 35 0 2259 89 7 0 chr4 62118214 62118506 -140209841 + AluSx SINE Alu 1 294 -18 37 52 0 0 chr4 62118977 62119035 -140209312 + AT_rich Low_complexity Low_complexity 1 58 0 32 43 0 0 chr4 62119103 62119149 -140209198 + AT_rich Low_complexity Low_complexity 1 46 0 26 64 0 0 chr4 62119227 62119274 -140209073 + AT_rich Low_complexity Low_complexity 1 47 0 943 243 109 26 chr4 62119872 62120313 -140208034 + MLT1E LTR MaLR 4 561 -32 27 49 0 0 chr4 62120737 62120778 -140207569 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr4 62121754 62121777 -140206570 + AT_rich Low_complexity Low_complexity 1 23 0 23 78 0 0 chr4 62122786 62122837 -140205510 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr4 62122869 62122892 -140205455 + AT_rich Low_complexity Low_complexity 1 23 0 219 174 22 0 chr4 62123683 62123729 -140204618 + CT-rich Low_complexity Low_complexity 1 47 0 1247 203 59 45 chr4 62124077 62124730 -140203617 + LTR48B LTR ERV1 4 644 0 30 0 0 0 chr4 62125427 62125457 -140202890 + AT_rich Low_complexity Low_complexity 1 30 0 251 241 35 0 chr4 62125875 62125933 -140202414 + L1MCa LINE L1 1594 1653 -4773 549 103 81 0 chr4 62126163 62126250 -140202097 - L1MC1 LINE L1 -501 5832 5739 * 745 283 57 14 chr4 62126249 62126602 -140201745 - L1MEc LINE L1 -2355 4071 3704 * 931 264 59 48 chr4 62126600 62127124 -140201223 - L1MEc LINE L1 -3687 2739 2252 6238 196 31 20 chr4 62127128 62128446 -140199901 - L1MEc LINE L1 -5075 1351 20 21 0 0 0 chr4 62128676 62128697 -140199650 + AT_rich Low_complexity Low_complexity 1 21 0 228 100 0 0 chr4 62128746 62128786 -140199561 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2031 106 89 42 chr4 62129581 62129687 -140198660 - MER51B LTR ERV1 0 377 277 2207 117 3 0 chr4 62129687 62129985 -140198362 + AluSx SINE Alu 1 299 -13 2031 106 89 42 chr4 62129985 62130238 -140198109 - MER51B LTR ERV1 -100 277 1 2289 132 20 35 chr4 62130240 62130634 -140197713 - MER51B-int LTR ERV1 -1 7815 7428 589 156 10 0 chr4 62130634 62130730 -140197617 - LTR54B LTR ERV1 -399 99 3 6355 136 17 3 chr4 62130730 62132118 -140196229 - MER51B-int LTR ERV1 -390 7147 5620 1601 114 43 8 chr4 62132261 62132556 -140195791 - MER51B-int LTR ERV1 -2117 5301 2336 * 2797 183 51 17 chr4 62132543 62133187 -140195160 - MER51B-int LTR ERV1 -3078 2139 1474 * 8575 145 113 77 chr4 62133160 62134522 -140193825 - MER51-int LTR ERV1 -351 3327 2015 6257 63 2 13 chr4 62134522 62135310 -140193037 - LTR17 LTR ERV1 0 780 1 8575 145 113 77 chr4 62135310 62135633 -140192714 - MER51-int LTR ERV1 -1663 2015 281 3604 116 45 20 chr4 62136489 62136998 -140191349 - MER51B-int LTR ERV1 -7206 610 82 216 0 0 0 chr4 62136998 62137022 -140191325 + (GA)n Simple_repeat Simple_repeat 1 24 0 3604 116 45 20 chr4 62137022 62137107 -140191240 - MER51B-int LTR ERV1 -7734 82 1 1933 127 118 0 chr4 62137119 62137451 -140190896 - MER51B LTR ERV1 -6 371 1 266 194 32 16 chr4 62137559 62137621 -140190726 - MER51-int LTR ERV1 -6995 821 759 225 103 0 0 chr4 62137621 62137650 -140190697 - AluJb SINE Alu -34 268 240 5144 130 3 6 chr4 62137652 62138429 -140189918 - LTR17 LTR ERV1 0 780 7 1296 213 8 0 chr4 62138452 62138691 -140189656 - AluJb SINE Alu -71 241 1 21 57 0 0 chr4 62138845 62138880 -140189467 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 62139440 62139462 -140188885 + AT_rich Low_complexity Low_complexity 1 22 0 628 294 18 78 chr4 62139802 62140135 -140188212 - MLT1I LTR MaLR 0 409 97 2117 118 7 0 chr4 62140340 62140637 -140187710 - AluSq SINE Alu -14 299 1 1177 237 109 16 chr4 62141167 62141479 -140186868 + MER58B DNA MER1_type 1 341 0 195 328 164 9 chr4 62142426 62142542 -140185805 + L2 LINE L2 2880 3013 -300 497 310 87 35 chr4 62142557 62143252 -140185095 + L1MEc LINE L1 743 1469 -4746 342 222 40 0 chr4 62143260 62143359 -140184988 + L1MC4 LINE L1 7737 7839 -203 330 281 39 23 chr4 62143593 62143721 -140184626 - Charlie8 DNA MER1_type -2192 225 96 21 82 0 0 chr4 62143961 62144010 -140184337 + AT_rich Low_complexity Low_complexity 1 49 0 5770 136 83 33 chr4 62145078 62145587 -140182760 - Tigger3b DNA MER2_type -1807 1221 739 3842 77 2 0 chr4 62145587 62146094 -140182253 + L1PA8 LINE L1 5661 6168 -4 5770 136 83 33 chr4 62146094 62146147 -140182200 - Tigger3b DNA MER2_type -2289 739 690 1608 200 3 16 chr4 62146147 62146452 -140181895 - AluJb SINE Alu -11 301 1 5770 136 83 33 chr4 62146452 62146560 -140181787 - Tigger3b DNA MER2_type -2338 690 589 2377 63 0 13 chr4 62146560 62146862 -140181485 + AluY SINE Alu 1 298 -13 5770 136 83 33 chr4 62146862 62147348 -140180999 - Tigger3b DNA MER2_type -2439 589 5 207 186 0 0 chr4 62147361 62147404 -140180943 + (TA)n Simple_repeat Simple_repeat 1 43 0 1550 179 40 30 chr4 62147502 62147803 -140180544 - AluJb SINE Alu -8 304 1 228 67 0 0 chr4 62147816 62147846 -140180501 + (TG)n Simple_repeat Simple_repeat 1 30 0 260 230 14 0 chr4 62147847 62147921 -140180426 + (TA)n Simple_repeat Simple_repeat 2 76 0 1308 220 0 15 chr4 62147939 62148207 -140180140 + AluJo SINE Alu 23 286 -26 221 149 43 0 chr4 62148215 62148262 -140180085 + A-rich Low_complexity Low_complexity 3 51 0 1699 142 113 0 chr4 62148528 62148803 -140179544 - AluSx SINE Alu -2 310 5 195 167 0 0 chr4 62150169 62150211 -140178136 + (CA)n Simple_repeat Simple_repeat 2 43 0 241 330 43 0 chr4 62150621 62150715 -140177632 + MIR SINE MIR 149 246 -16 202 185 31 46 chr4 62150827 62150892 -140177455 + (TAAAG)n Simple_repeat Simple_repeat 2 65 0 969 276 200 31 chr4 62151070 62151815 -140176532 + L2 LINE L2 2459 3313 0 274 349 85 16 chr4 62153087 62153276 -140175071 - MIR SINE MIR -29 233 32 258 106 0 0 chr4 62153896 62153943 -140174404 + (TA)n Simple_repeat Simple_repeat 1 47 0 2231 99 3 0 chr4 62153943 62154236 -140174111 - AluSp SINE Alu -19 294 1 256 376 86 8 chr4 62154366 62154483 -140173864 - L2 LINE L2 -2 3270 3145 23 0 0 0 chr4 62154720 62154743 -140173604 + AT_rich Low_complexity Low_complexity 1 23 0 295 390 54 19 chr4 62155029 62155234 -140173113 - MIR SINE MIR -30 232 21 595 283 56 6 chr4 62155301 62155481 -140172866 + MER5A DNA MER1_type 1 189 0 368 244 22 11 chr4 62155498 62155588 -140172759 - MER5B DNA MER1_type -2 176 86 183 256 0 23 chr4 62155672 62155715 -140172632 - MER5B DNA MER1_type -135 43 2 431 285 64 41 chr4 62155724 62155896 -140172451 - MER5A DNA MER1_type 0 189 14 405 286 63 93 chr4 62155984 62156253 -140172094 + MIR SINE MIR 2 262 0 32 57 0 0 chr4 62157315 62157368 -140170979 + AT_rich Low_complexity Low_complexity 1 53 0 276 30 0 0 chr4 62158157 62158190 -140170157 + (CA)n Simple_repeat Simple_repeat 2 34 0 975 276 66 18 chr4 62159130 62159532 -140168815 - MLT1E LTR MaLR -4 589 75 27 0 0 0 chr4 62159745 62159772 -140168575 + AT_rich Low_complexity Low_complexity 1 27 0 2084 134 0 13 chr4 62159879 62160193 -140168154 + AluSg SINE Alu 1 310 0 1761 189 111 0 chr4 62160235 62160420 -140167927 - MSTA LTR MaLR -17 411 248 207 0 0 0 chr4 62160420 62160443 -140167904 + (GA)n Simple_repeat Simple_repeat 2 24 0 1761 189 111 0 chr4 62160443 62160627 -140167720 - MSTA LTR MaLR -180 248 1 716 299 103 40 chr4 62160799 62161332 -140167015 - L2 LINE L2 -33 3280 2713 252 318 175 21 chr4 62161333 62161619 -140166728 - L2 LINE L2 -1520 1794 1465 22 35 0 0 chr4 62162122 62162151 -140166196 + AT_rich Low_complexity Low_complexity 1 29 0 2271 151 56 7 chr4 62162644 62163056 -140165291 + MSTB1 LTR MaLR 1 432 0 218 191 24 0 chr4 62163155 62163197 -140165150 + (TG)n Simple_repeat Simple_repeat 2 44 0 347 370 87 14 chr4 62163648 62163867 -140164480 - MIR SINE MIR 0 262 28 24 0 0 0 chr4 62164341 62164365 -140163982 + AT_rich Low_complexity Low_complexity 1 24 0 468 117 0 0 chr4 62164497 62164574 -140163773 + (TCCCC)n Simple_repeat Simple_repeat 2 78 0 402 278 26 26 chr4 62165646 62165797 -140162550 - L2 LINE L2 -21 3292 3142 426 299 51 47 chr4 62165942 62166176 -140162171 - MLT1J2 LTR MaLR 0 450 216 431 364 60 14 chr4 62166362 62166579 -140161768 + L2 LINE L2 2838 3064 -249 297 75 0 0 chr4 62166625 62166665 -140161682 + (CA)n Simple_repeat Simple_repeat 2 41 0 350 297 34 27 chr4 62166850 62166998 -140161349 + L2 LINE L2 3165 3313 0 23 33 0 0 chr4 62168152 62168182 -140160165 + AT_rich Low_complexity Low_complexity 1 30 0 1008 210 52 148 chr4 62168313 62168771 -140159576 + MLT2D LTR ERVL 1 414 0 676 199 0 6 chr4 62168878 62169114 -140159233 + AluJo SINE Alu 1 286 -26 2359 71 0 16 chr4 62169266 62169574 -140158773 - AluY SINE Alu -8 303 1 22 0 0 0 chr4 62169678 62169700 -140158647 + AT_rich Low_complexity Low_complexity 1 22 0 35 78 0 0 chr4 62169788 62169865 -140158482 + AT_rich Low_complexity Low_complexity 1 77 0 50 71 0 0 chr4 62170026 62170125 -140158222 + AT_rich Low_complexity Low_complexity 1 99 0 894 201 25 5 chr4 62170217 62170421 -140157926 - Charlie2 DNA MER1_type -798 2064 1857 474 315 136 4 chr4 62170427 62170706 -140157641 - Charlie2 DNA MER1_type -2540 322 7 194 232 18 18 chr4 62170818 62170874 -140157473 - MIR SINE MIR -83 179 124 942 195 0 0 chr4 62171681 62171850 -140156497 - FRAM SINE Alu -9 167 1 186 200 9 19 chr4 62172748 62172853 -140155494 + (TA)n Simple_repeat Simple_repeat 1 104 0 501 350 89 38 chr4 62172944 62173315 -140155032 - MLT1J LTR MaLR -67 444 55 8552 174 32 39 chr4 62173526 62175316 -140153031 - L1MA2 LINE L1 0 7723 5921 2204 127 3 0 chr4 62175316 62175624 -140152723 - AluSx SINE Alu -3 309 1 8552 174 32 39 chr4 62175624 62175751 -140152596 - L1MA2 LINE L1 -1802 5921 5795 1863 130 4 0 chr4 62175751 62176005 -140152342 + AluSg SINE Alu 1 255 -55 8552 174 32 39 chr4 62176005 62177131 -140151216 - L1MA2 LINE L1 -1928 5795 4706 4114 206 34 12 chr4 62177135 62177963 -140150384 - L1MA2 LINE L1 -6704 861 16 1043 76 0 0 chr4 62178179 62178310 -140150037 + MER11B LTR ERVK 1106 1236 0 817 268 39 20 chr4 62178314 62178706 -140149641 - L1MCb LINE L1 -3699 2869 2502 1589 218 75 25 chr4 62178750 62179190 -140149157 - MLT1C LTR MaLR 0 467 6 855 289 109 23 chr4 62179195 62179723 -140148624 - L1MCb LINE L1 -4206 2358 1842 2045 175 33 34 chr4 62179730 62180281 -140148066 - MLT2A2 LTR ERVL 0 554 3 1103 268 83 63 chr4 62180305 62180426 -140147921 - L1MCb LINE L1 -4851 1194 1077 207 0 0 0 chr4 62180426 62180449 -140147898 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1103 268 83 63 chr4 62180449 62180924 -140147423 - L1MCb LINE L1 -4968 1077 1041 1302 223 36 40 chr4 62180924 62181369 -140146978 - LTR56 LTR ERV1 0 445 3 1103 268 83 63 chr4 62181369 62181848 -140146499 - L1MCb LINE L1 -5004 1041 573 557 279 48 48 chr4 62182288 62182582 -140145765 - L1MCb LINE L1 -5743 302 9 1755 254 103 12 chr4 62183369 62183862 -140144485 + MLT1F LTR MaLR 1 538 -4 26 0 0 0 chr4 62184111 62184137 -140144210 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr4 62184549 62184580 -140143767 + AT_rich Low_complexity Low_complexity 1 31 0 2492 65 0 0 chr4 62184590 62184900 -140143447 + AluY SINE Alu 1 310 -1 829 250 193 21 chr4 62185453 62185925 -140142422 - Zaphod DNA AcHobo -77 3954 3402 309 291 60 0 chr4 62185958 62186075 -140142272 - MER110 LTR ERV1 -5 486 363 181 204 35 9 chr4 62186083 62186196 -140142151 + (TA)n Simple_repeat Simple_repeat 2 117 0 255 175 0 0 chr4 62186216 62186273 -140142074 + GA-rich Low_complexity Low_complexity 2 58 0 267 243 0 0 chr4 62186511 62186581 -140141766 - Zaphod DNA AcHobo -657 3374 3305 537 0 41 0 chr4 62186583 62186656 -140141691 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 1690 263 109 43 chr4 62186743 62187793 -140140554 - Zaphod DNA AcHobo -899 3132 2013 23 86 0 0 chr4 62187818 62187876 -140140471 + AT_rich Low_complexity Low_complexity 1 58 0 2612 260 80 27 chr4 62187985 62189153 -140139194 - Zaphod DNA AcHobo -2693 1338 110 30 27 0 0 chr4 62189388 62189425 -140138922 + AT_rich Low_complexity Low_complexity 1 37 0 287 296 151 17 chr4 62190786 62190958 -140137389 - MLT1I LTR MaLR -174 235 41 32 26 0 0 chr4 62191097 62191136 -140137211 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr4 62191169 62191198 -140137149 + AT_rich Low_complexity Low_complexity 1 29 0 29 70 0 0 chr4 62191568 62191625 -140136722 + AT_rich Low_complexity Low_complexity 1 57 0 1644 195 47 36 chr4 62192271 62192630 -140135717 + MLT1A1 LTR MaLR 3 365 0 1364 276 152 18 chr4 62193159 62193673 -140134674 + MLT1G1 LTR MaLR 4 586 -9 241 323 0 0 chr4 62194878 62194971 -140133376 + (CATATA)n Simple_repeat Simple_repeat 5 97 0 390 340 143 26 chr4 62195279 62195658 -140132689 + MLT1K LTR MaLR 92 514 -74 21 0 0 0 chr4 62196464 62196485 -140131862 + AT_rich Low_complexity Low_complexity 1 21 0 367 141 16 0 chr4 62197080 62197144 -140131203 + MER31B LTR ERV1 1 65 -401 630 285 66 20 chr4 62197175 62197480 -140130867 + L1ME2 LINE L1 5818 6136 -28 620 341 46 0 chr4 62197530 62197855 -140130492 + HAL1 LINE L1 1583 1922 -585 428 266 148 27 chr4 62197984 62198240 -140130107 - L1ME3A LINE L1 0 6170 5884 521 272 26 72 chr4 62198335 62198530 -140129817 + LTR16C LTR ERVL 297 482 -9 25 0 0 0 chr4 62199335 62199360 -140128987 + AT_rich Low_complexity Low_complexity 1 25 0 2052 102 11 0 chr4 62199392 62199666 -140128681 - AluSc SINE Alu -32 277 1 211 382 36 0 chr4 62200338 62200448 -140127899 - MIR3 SINE MIR -50 158 45 1943 120 30 3 chr4 62201048 62201347 -140127000 - AluSx SINE Alu -1 311 5 397 299 15 0 chr4 62202939 62203076 -140125271 - MIR SINE MIR 0 262 124 22 35 0 0 chr4 62203266 62203295 -140125052 + AT_rich Low_complexity Low_complexity 1 29 0 190 353 193 8 chr4 62204201 62204439 -140123908 + L3 LINE CR1 999 1280 -297 822 217 6 28 chr4 62205002 62205182 -140123165 + MER76 LTR ERV 1 176 -512 666 223 0 0 chr4 62205185 62205315 -140123032 + AluJo/FLAM SINE Alu 1 130 -172 278 172 86 35 chr4 62205316 62205374 -140122973 + AluSp SINE Alu 125 185 -118 * 5698 131 49 15 chr4 62205367 62206382 -140121965 - Tigger3b DNA MER2_type -181 1050 1 555 144 19 29 chr4 62206403 62206507 -140121840 + MER76 LTR ERV 586 688 0 2455 185 79 36 chr4 62206520 62207013 -140121334 + MLT2B3 LTR ERVL 1 520 -34 206 62 31 0 chr4 62207013 62207045 -140121302 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 2455 185 79 36 chr4 62207045 62207082 -140121265 + MLT2B3 LTR ERVL 520 554 0 461 264 215 3 chr4 62207822 62208030 -140120317 + MIR SINE MIR 14 262 0 281 263 153 42 chr4 62208045 62208163 -140120184 + L2 LINE L2 3125 3255 -17 229 203 51 0 chr4 62208831 62208890 -140119457 + CT-rich Low_complexity Low_complexity 3 64 0 25 0 0 0 chr4 62209744 62209769 -140118578 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 62209905 62209927 -140118420 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 62211082 62211103 -140117244 + AT_rich Low_complexity Low_complexity 1 21 0 1799 242 41 82 chr4 62211234 62211993 -140116354 + L1MCb LINE L1 46 770 -5275 1767 145 115 60 chr4 62211993 62212394 -140115953 + MSTA LTR MaLR 5 427 -1 1799 242 41 82 chr4 62212394 62212459 -140115888 + L1MCb LINE L1 770 836 -5209 827 286 152 7 chr4 62212884 62213257 -140115090 - MLT1E1 LTR MaLR 0 654 119 364 243 84 0 chr4 62213258 62213365 -140114982 - MLT1E1 LTR MaLR -430 163 48 252 267 68 27 chr4 62213480 62213632 -140114715 + L1MCb LINE L1 936 1093 -5369 * 685 281 26 33 chr4 62213623 62213925 -140114422 + L1MC4 LINE L1 7619 7918 -124 534 31 0 0 chr4 62213949 62214013 -140114334 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 247 322 25 17 chr4 62214045 62214163 -140114184 + L1MC4 LINE L1 7923 8041 -1 31 66 0 41 chr4 62214163 62214207 -140114140 + AT_rich Low_complexity Low_complexity 1 45 -71 2252 96 3 13 chr4 62214207 62214519 -140113828 - AluSp SINE Alu -2 311 3 31 66 0 41 chr4 62214519 62214595 -140113752 + AT_rich Low_complexity Low_complexity 45 116 0 23 54 0 0 chr4 62215037 62215074 -140113273 + AT_rich Low_complexity Low_complexity 1 37 0 295 340 60 45 chr4 62217192 62217392 -140110955 - LTR16C LTR ERVL 0 491 289 7845 18 4 0 chr4 62217863 62219402 -140108945 - L1HS LINE L1 0 6155 4610 3398 20 0 0 chr4 62219400 62219802 -140108545 + L1HS LINE L1 4211 4612 -1534 * 1173 116 55 10 chr4 62220027 62220226 -140108121 - Tigger1 DNA MER2_type 0 2418 2211 879 173 0 0 chr4 62220232 62220371 -140107976 - Tigger1 DNA MER2_type -2279 139 1 1056 221 92 37 chr4 62220718 62221044 -140107303 - MER2 DNA MER2_type 0 344 1 31832 117 25 20 chr4 62221209 62227329 -140101018 - L1PA7 LINE L1 -7 6147 2 5177 112 12 23 chr4 62227857 62228691 -140099656 + L1PB2 LINE L1 5327 6151 0 1226 236 49 27 chr4 62228783 62229205 -140099142 - L1MC4a LINE L1 -1162 6623 6174 1706 226 187 18 chr4 62229260 62229668 -140098679 - MLT2F LTR ERVL -7 656 126 198 0 0 0 chr4 62229668 62229690 -140098657 + (TG)n Simple_repeat Simple_repeat 2 23 0 1706 226 187 18 chr4 62229690 62229842 -140098505 - MLT2F LTR ERVL -537 126 1 314 278 213 28 chr4 62230124 62230340 -140098007 - L1MEc LINE L1 -4518 2089 1834 2051 108 7 0 chr4 62230349 62230655 -140097692 + AluSg SINE Alu 3 310 0 413 308 138 0 chr4 62230709 62230904 -140097443 - L1MEc LINE L1 -4928 1498 1277 35 71 0 0 chr4 62230962 62231032 -140097315 + AT_rich Low_complexity Low_complexity 1 70 0 207 0 0 0 chr4 62231299 62231322 -140097025 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 1303 76 0 0 chr4 62231324 62231496 -140096851 - L1PA8 LINE L1 -1 6171 6000 1235 236 6 70 chr4 62231549 62231905 -140096442 + MLT1A1 LTR MaLR 33 365 0 23 0 0 0 chr4 62231984 62232007 -140096340 + AT_rich Low_complexity Low_complexity 1 23 0 871 311 116 29 chr4 62232201 62232712 -140095635 - MLT1H1 LTR MaLR 0 555 1 317 305 127 52 chr4 62232827 62233070 -140095277 - L2 LINE L2 -159 3154 2882 207 0 0 0 chr4 62233070 62233093 -140095254 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 317 305 127 52 chr4 62233093 62233157 -140095190 - L2 LINE L2 -431 2882 2824 1754 185 131 13 chr4 62233277 62233660 -140094687 - MSTA LTR MaLR 0 428 1 649 314 100 41 chr4 62233688 62234122 -140094225 - L2 LINE L2 -660 2654 2186 1583 203 41 22 chr4 62234122 62234486 -140093861 - MLT1A2 LTR MaLR 0 374 4 649 314 100 41 chr4 62234486 62234542 -140093805 - L2 LINE L2 -1128 2186 2135 690 246 120 47 chr4 62235274 62235635 -140092712 - MLT1C LTR MaLR 0 467 64 2909 79 2 5 chr4 62235635 62236039 -140092308 + L1PA8 LINE L1 5768 6170 -2 690 246 120 47 chr4 62236039 62236109 -140092238 - MLT1C LTR MaLR -403 64 1 21 0 0 0 chr4 62236205 62236226 -140092121 + AT_rich Low_complexity Low_complexity 1 21 0 225 276 0 0 chr4 62236251 62236309 -140092038 + L1P LINE L1 4058 4115 -2031 543 287 85 59 chr4 62236325 62236785 -140091562 + L1ME LINE L1 4171 4642 -1504 258 314 0 12 chr4 62236837 62236923 -140091424 + GA-rich Low_complexity Low_complexity 1 85 0 561 331 103 24 chr4 62237040 62237457 -140090890 + L1ME LINE L1 4824 5273 -873 347 244 109 29 chr4 62237471 62237697 -140090650 + L1ME LINE L1 5309 5553 -618 202 244 0 0 chr4 62237780 62237825 -140090522 + (TA)n Simple_repeat Simple_repeat 1 45 0 256 48 32 48 chr4 62237845 62237907 -140090440 + (TA)n Simple_repeat Simple_repeat 2 62 0 209 304 63 0 chr4 62238232 62238311 -140090036 + MIR SINE MIR 3 86 -176 238 279 15 0 chr4 62238681 62238749 -140089598 + GA-rich Low_complexity Low_complexity 4 72 0 252 250 103 0 chr4 62241472 62241540 -140086807 - L2 LINE L2 -1895 1419 1345 996 294 74 71 chr4 62241541 62242146 -140086201 - L2 LINE L2 -2305 1009 403 714 291 117 72 chr4 62242146 62242726 -140085621 - MER21B LTR ERV1 -149 714 109 755 316 118 51 chr4 62242875 62243248 -140085099 - L2 LINE L2 -2903 411 14 186 43 0 0 chr4 62245183 62245206 -140083141 + (T)n Simple_repeat Simple_repeat 1 23 0 2324 72 3 16 chr4 62245285 62245592 -140082755 - AluSq SINE Alu -10 303 1 461 343 17 11 chr4 62245887 62246068 -140082279 - MER5A DNA MER1_type 0 189 8 705 247 50 16 chr4 62246083 62246265 -140082082 + MER5A DNA MER1_type 2 189 0 5523 116 48 0 chr4 62246680 62247551 -140080796 - L1PA14 LINE L1 -17 6144 5233 222 254 109 61 chr4 62248034 62248199 -140080148 + MIR SINE MIR 90 262 0 248 229 96 60 chr4 62248872 62248955 -140079392 - L2 LINE L2 -3 3310 3225 21 36 0 0 chr4 62249916 62249944 -140078403 + AT_rich Low_complexity Low_complexity 1 28 0 363 206 11 65 chr4 62250011 62250103 -140078244 - MIR SINE MIR -98 164 78 255 103 0 0 chr4 62250501 62250540 -140077807 + (TCC)n Simple_repeat Simple_repeat 3 41 0 920 207 80 141 chr4 62251165 62251554 -140076793 - MLT1A1 LTR MaLR 0 426 1 805 224 51 100 chr4 62251566 62251963 -140076384 + MLT1A1 LTR MaLR 20 395 -1 5771 242 87 23 chr4 62251965 62253596 -140074751 + MLT1A1-int LTR MaLR 2 1735 0 857 216 69 75 chr4 62253596 62254007 -140074340 + MLT1A1 LTR MaLR 1 365 0 582 237 135 13 chr4 62254099 62254255 -140074092 - MER45A DNA AcHobo -3 175 1 23 33 0 0 chr4 62255217 62255247 -140073100 + AT_rich Low_complexity Low_complexity 1 30 0 211 164 33 16 chr4 62255543 62255604 -140072743 + GA-rich Low_complexity Low_complexity 1 62 0 2115 105 3 0 chr4 62255638 62255923 -140072424 + AluSp SINE Alu 1 323 0 294 0 27 0 chr4 62255923 62255960 -140072387 + (TAAAA)n Simple_repeat Simple_repeat 2 115 0 27 49 0 0 chr4 62256291 62256332 -140072015 + AT_rich Low_complexity Low_complexity 1 41 0 523 308 80 106 chr4 62256648 62256707 -140071640 + MER115 DNA AcHobo 61 120 -573 1087 216 28 111 chr4 62256707 62257105 -140071242 + MLT1A1 LTR MaLR 1 365 0 523 308 80 106 chr4 62257105 62257431 -140070916 + MER115 DNA AcHobo 120 436 -257 220 207 52 0 chr4 62257762 62257820 -140070527 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 24 53 0 0 chr4 62257863 62257901 -140070446 + AT_rich Low_complexity Low_complexity 1 38 0 2630 178 26 12 chr4 62257962 62258530 -140069817 - L1MC2 LINE L1 -1 6343 5768 840 276 86 34 chr4 62258532 62258883 -140069464 - MLT2C2 LTR ERVL -13 451 83 2315 202 64 21 chr4 62258920 62259671 -140068676 - L1MC2 LINE L1 -573 5771 5003 260 226 16 0 chr4 62260271 62260333 -140068014 - MER115 DNA AcHobo -74 619 557 192 40 0 0 chr4 62260420 62260445 -140067902 + (TTA)n Simple_repeat Simple_repeat 3 27 0 6789 103 29 20 chr4 62261202 62262239 -140066108 + MER11C LTR ERVK 1 1046 -25 21 0 0 0 chr4 62262405 62262426 -140065921 + AT_rich Low_complexity Low_complexity 1 21 0 201 74 0 0 chr4 62262818 62262845 -140065502 + (CA)n Simple_repeat Simple_repeat 2 28 0 1336 208 32 49 chr4 62262907 62263253 -140065094 + MLT1A1 LTR MaLR 1 340 -25 31 44 0 0 chr4 62263469 62263514 -140064833 + AT_rich Low_complexity Low_complexity 1 45 0 13335 212 52 24 chr4 62263566 62269194 -140059153 + L1PA12 LINE L1 2 5858 -1726 1895 112 20 7 chr4 62269194 62269477 -140058870 + L1PA12 LINE L1 7307 7604 -2 1752 148 25 4 chr4 62269628 62269927 -140058420 + AluSx SINE Alu 1 305 0 36 0 0 0 chr4 62271922 62271958 -140056389 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 62272173 62272194 -140056153 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr4 62273611 62273633 -140054714 + (T)n Simple_repeat Simple_repeat 1 22 0 26 0 0 0 chr4 62274393 62274419 -140053928 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 62274617 62274639 -140053708 + AT_rich Low_complexity Low_complexity 1 22 0 323 263 86 34 chr4 62275151 62275326 -140053021 + L1ME3A LINE L1 5731 5914 -256 570 232 48 36 chr4 62275383 62275551 -140052796 + L1ME3A LINE L1 6001 6170 0 2074 226 47 64 chr4 62276149 62276807 -140051540 - L1MD2 LINE L1 -27 6332 5686 181 250 0 0 chr4 62276991 62277035 -140051312 - MER5B DNA MER1_type 0 178 135 1425 70 0 87 chr4 62277036 62277294 -140051053 - AluSp SINE Alu 0 313 76 380 302 101 8 chr4 62277295 62277424 -140050923 + MER5B DNA MER1_type 38 178 0 327 369 83 23 chr4 62281131 62281348 -140046999 + MIR SINE MIR 13 242 -20 2482 311 90 39 chr4 62281548 62283250 -140045097 + L2 LINE L2 1198 3300 -13 425 279 73 55 chr4 62283250 62283415 -140044932 + L2 LINE L2 3146 3313 0 2215 117 0 0 chr4 62283611 62283909 -140044438 - AluSg SINE Alu -10 300 3 616 248 13 0 chr4 62285086 62285235 -140043112 - MER97b DNA MER1_type? -874 179 29 203 274 98 0 chr4 62285993 62286044 -140042303 - L2 LINE L2 -20 3252 3197 37 18 0 18 chr4 62288718 62288743 -140039604 + AT_rich Low_complexity Low_complexity 1 25 -29 2004 134 3 0 chr4 62288743 62289034 -140039313 - AluSx SINE Alu -20 292 1 37 18 0 18 chr4 62289034 62289063 -140039284 + AT_rich Low_complexity Low_complexity 25 54 0 285 313 77 52 chr4 62289249 62289482 -140038865 - L2 LINE L2 -51 3262 3024 21 0 0 0 chr4 62291462 62291483 -140036864 + AT_rich Low_complexity Low_complexity 1 21 0 243 351 0 67 chr4 62292164 62292298 -140036049 - MIR SINE MIR -40 222 98 2146 142 23 9 chr4 62292870 62293216 -140035131 + THE1B LTR MaLR 1 351 -13 185 330 43 43 chr4 62293937 62294031 -140034316 + L2 LINE L2 3220 3313 0 312 333 46 36 chr4 62294980 62295175 -140033172 + L2 LINE L2 2682 2878 -436 596 326 21 21 chr4 62295743 62295976 -140032371 + L2 LINE L2 2503 2735 -579 959 215 25 138 chr4 62295976 62296381 -140031966 + MLT1A1 LTR MaLR 1 359 -6 362 352 97 18 chr4 62296402 62296669 -140031678 + L2 LINE L2 2751 3038 -275 1503 211 22 22 chr4 62296674 62297029 -140031318 - MLT1A1 LTR MaLR -1 364 10 1762 165 48 31 chr4 62297245 62297603 -140030744 + THE1B LTR MaLR 1 364 0 10790 121 1 8 chr4 62297603 62299194 -140029153 + THE1B-int LTR MaLR 1 1580 0 1810 148 63 31 chr4 62299194 62299545 -140028802 + THE1B LTR MaLR 1 362 -2 258 88 0 0 chr4 62299546 62299580 -140028767 + THE1B LTR MaLR 329 362 -2 1047 313 23 6 chr4 62299586 62299931 -140028416 + LTR16B LTR ERVL 114 464 0 1188 266 33 22 chr4 62300018 62300383 -140027964 - MER74B LTR ERVL -61 561 193 276 208 0 0 chr4 62300444 62300497 -140027850 - MER74B LTR ERVL -569 53 1 949 235 33 0 chr4 62300527 62300740 -140027607 + MER58A DNA MER1_type 5 224 0 52 41 0 0 chr4 62300757 62300830 -140027517 + AT_rich Low_complexity Low_complexity 1 73 0 296 310 0 65 chr4 62300835 62300990 -140027357 + L2 LINE L2 3168 3312 -1 292 294 73 66 chr4 62301837 62301973 -140026374 + L2 LINE L2 1853 1989 -1325 603 153 34 0 chr4 62301975 62302093 -140026254 - AluSg/x SINE Alu -11 298 177 1404 128 10 0 chr4 62302195 62302398 -140025949 - AluSq SINE Alu -108 205 1 362 362 109 30 chr4 62302420 62302978 -140025369 + L2 LINE L2 2025 2626 -688 509 191 104 29 chr4 62303378 62303671 -140024676 - Charlie1 DNA MER1_type -4 2757 2415 2243 120 22 27 chr4 62303671 62304037 -140024310 - THE1B LTR MaLR 0 364 1 10637 134 1 0 chr4 62304037 62305616 -140022731 - THE1B-int LTR MaLR 0 1580 1 735 143 17 8 chr4 62305618 62305737 -140022610 - THE1B LTR MaLR -2 362 243 381 83 0 0 chr4 62305741 62305789 -140022558 - LTR49 LTR ERV1 -383 212 165 22 0 0 0 chr4 62305825 62305847 -140022500 + AT_rich Low_complexity Low_complexity 1 22 0 1957 244 71 33 chr4 62306227 62306773 -140021574 + MER21B LTR ERV1 1 567 -296 1742 226 44 60 chr4 62306897 62306937 -140021410 - MLT2B3 LTR ERVL 0 554 515 180 111 0 0 chr4 62306937 62306964 -140021383 + (TA)n Simple_repeat Simple_repeat 2 28 0 1742 226 44 60 chr4 62306964 62307486 -140020861 - MLT2B3 LTR ERVL -39 515 1 1320 220 36 54 chr4 62307546 62307991 -140020356 + LTR56 LTR ERV1 9 445 0 1768 235 76 40 chr4 62308044 62308546 -140019801 - MER21B LTR ERV1 -343 520 1 22 0 0 0 chr4 62308926 62308948 -140019399 + AT_rich Low_complexity Low_complexity 1 22 0 2220 119 33 0 chr4 62309139 62309471 -140018876 + LTR49 LTR ERV1 6 348 -247 3137 128 6 2 chr4 62309471 62309942 -140018405 - MER4D LTR ERV1 0 872 400 749 245 151 39 chr4 62309942 62310487 -140017860 + LTR28 LTR ERV1 2 636 0 286 234 85 25 chr4 62310506 62310712 -140017635 + LTR28-int LTR ERV1 29 254 -6837 * 4603 189 55 81 chr4 62310704 62311854 -140016493 + LTR28-int LTR ERV1 406 1583 -3634 240 59 0 0 chr4 62311854 62311888 -140016459 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4603 189 55 81 chr4 62311888 62312050 -140016297 + LTR28-int LTR ERV1 1583 4792 -425 418 209 0 23 chr4 62312047 62312133 -140016214 + MER61-int LTR ERV1 3912 3995 -885 * 11740 153 41 25 chr4 62312155 62316055 -140012292 + MER61-int LTR ERV1 615 5484 -462 1134 167 61 5 chr4 62316053 62316251 -140012096 + MER61-int LTR ERV1 5009 5217 0 * 772 222 11 11 chr4 62316252 62316428 -140011919 + LTR28 LTR ERV1 1 176 -844 858 255 62 62 chr4 62316462 62316830 -140011517 + LTR27 LTR ERV1 269 636 0 2259 120 18 0 chr4 62316832 62317165 -140011182 - MER4D LTR ERV1 -469 403 65 3131 154 15 62 chr4 62317165 62317846 -140010501 + LTR29-int LTR ERV1 2489 3137 -3194 715 222 81 35 chr4 62317793 62318054 -140010293 + LTR57-int LTR ERVL 1239 1511 -3832 * 296 299 14 7 chr4 62318063 62318207 -140010140 + LTR29-int LTR ERV1 1679 1823 -3113 12764 171 40 44 chr4 62318393 62321269 -140007078 + LTR29-int LTR ERV1 3467 6329 -2 1363 228 96 33 chr4 62321371 62321828 -140006519 + LTR29 LTR ERV1 137 622 0 3968 161 36 1 chr4 62322620 62323305 -140005042 - MER50 LTR ERV1 -23 711 3 454 270 9 17 chr4 62323470 62323585 -140004762 + MER81 DNA DNA 1 114 0 620 182 8 0 chr4 62323871 62323992 -140004355 + HSMAR2 DNA Mariner 2 123 -1179 180 0 0 0 chr4 62324119 62324139 -140004208 + (T)n Simple_repeat Simple_repeat 1 20 0 6992 151 13 5 chr4 62324251 62325416 -140002931 + HSMAR2 DNA Mariner 126 1299 -3 305 299 82 38 chr4 62325627 62325945 -140002402 + L1ME LINE L1 5493 5824 -297 2126 127 3 0 chr4 62326001 62326309 -140002038 + AluSq SINE Alu 1 309 -4 5373 148 58 75 chr4 62326523 62327345 -140001002 + Tigger3b DNA MER2_type 1 796 -2232 1927 123 31 3 chr4 62327345 62327637 -140000710 - AluY SINE Alu -11 300 1 5373 148 58 75 chr4 62327637 62328060 -140000287 + Tigger3b DNA MER2_type 796 1225 -6 22 35 0 0 chr4 62328352 62328381 -139999966 + AT_rich Low_complexity Low_complexity 1 29 0 235 229 83 31 chr4 62328628 62328724 -139999623 + HsTC2 DNA Tc2 4 104 -1794 230 267 0 0 chr4 62328734 62328794 -139999553 + HsTC2 DNA Tc2 1231 1290 -608 249 357 214 6 chr4 62328939 62329107 -139999240 - MIR SINE MIR -43 219 17 24 0 0 0 chr4 62329116 62329140 -139999207 + AT_rich Low_complexity Low_complexity 1 24 0 515 323 21 11 chr4 62330369 62330555 -139997792 - MLT1C LTR MaLR 0 467 280 514 165 35 0 chr4 62330629 62330744 -139997603 + CT-rich Low_complexity Low_complexity 2 120 0 384 235 51 128 chr4 62330744 62330766 -139997581 - MLT1C LTR MaLR -289 216 194 2154 113 7 0 chr4 62330766 62331067 -139997280 - AluSq SINE Alu -8 305 3 384 235 51 128 chr4 62331067 62331278 -139997069 - MLT1C LTR MaLR -311 194 1 22 35 0 0 chr4 62331388 62331417 -139996930 + AT_rich Low_complexity Low_complexity 1 29 0 2502 208 32 113 chr4 62331762 62331892 -139996455 + L1MB8 LINE L1 4360 4499 -1647 3744 42 54 0 chr4 62331892 62332372 -139995975 + L1PA4 LINE L1 5642 6147 -8 2502 208 32 113 chr4 62332372 62333299 -139995048 + L1MB8 LINE L1 4499 5332 -814 * 4087 218 35 6 chr4 62333297 62334284 -139994063 - L1MA4 LINE L1 -2873 3273 2258 7508 181 45 18 chr4 62334284 62335913 -139992434 + L1MA4 LINE L1 3300 4972 -1174 1986 97 62 81 chr4 62335913 62336217 -139992130 + THE1B LTR MaLR 1 298 -66 1112 132 0 0 chr4 62336217 62336391 -139991956 - L1PA7 LINE L1 0 6154 5981 1986 97 62 81 chr4 62336391 62336457 -139991890 + THE1B LTR MaLR 298 364 0 3977 177 44 9 chr4 62336459 62337564 -139990783 + L1MA4 LINE L1 4970 6162 -9 3425 210 25 35 chr4 62337575 62337761 -139990586 + L1MB8 LINE L1 5320 5506 -672 1919 194 28 33 chr4 62337761 62338189 -139990158 - MSTB LTR MaLR 0 426 1 3425 210 25 35 chr4 62338189 62338225 -139990122 + L1MB8 LINE L1 5506 5541 -637 369 0 0 0 chr4 62338225 62338266 -139990081 + (TG)n Simple_repeat Simple_repeat 2 42 0 3425 210 25 35 chr4 62338266 62338900 -139989447 + L1MB8 LINE L1 5541 6168 -10 1037 253 172 41 chr4 62339711 62340518 -139987829 + Charlie7 DNA MER1_type 1425 2337 -275 32 0 0 0 chr4 62340553 62340585 -139987762 + AT_rich Low_complexity Low_complexity 1 32 0 1308 211 124 26 chr4 62340847 62341265 -139987082 - MLT1C LTR MaLR 0 467 9 1554 221 31 8 chr4 62341266 62341647 -139986700 - MLT1B LTR MaLR 0 390 1 372 241 37 0 chr4 62341657 62341765 -139986582 + L1ME LINE L1 5319 5430 -732 * 561 268 196 53 chr4 62341760 62342215 -139986132 + L1MCa LINE L1 140 659 -5905 1094 299 25 14 chr4 62342249 62342614 -139985733 + L1MCa LINE L1 579 947 -5098 1771 132 15 11 chr4 62343358 62343543 -139984804 - AluSq SINE Alu 0 313 125 273 29 0 0 chr4 62343543 62343577 -139984770 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1771 132 15 11 chr4 62343577 62343664 -139984683 - AluSq SINE Alu -188 125 40 419 141 33 11 chr4 62343891 62343983 -139984364 + L1PB1 LINE L1 6058 6151 0 203 233 0 0 chr4 62345053 62345096 -139983251 + L2 LINE L2 3229 3271 -1 280 103 0 0 chr4 62345154 62345193 -139983154 + THE1B LTR MaLR 1 39 -336 1394 58 0 0 chr4 62345193 62345364 -139982983 + THE1B LTR MaLR 194 364 0 10340 117 31 1 chr4 62345364 62346897 -139981450 + THE1B-int LTR MaLR 1 1580 0 2251 137 31 14 chr4 62346897 62347255 -139981092 + THE1B LTR MaLR 1 364 0 393 360 0 7 chr4 62347630 62347777 -139980570 - MIR SINE MIR -10 252 107 197 304 51 0 chr4 62347865 62347944 -139980403 + MIR SINE MIR 119 201 -61 7418 33 5 0 chr4 62348466 62350020 -139978327 - L1PA5 LINE L1 -13 6141 4584 214 385 133 22 chr4 62352198 62352424 -139975923 - MIR SINE MIR -1 261 11 183 80 0 0 chr4 62352690 62352715 -139975632 + (TCTA)n Simple_repeat Simple_repeat 1 25 0 2378 67 0 10 chr4 62355648 62355962 -139972385 + AluY SINE Alu 1 311 0 23 0 0 0 chr4 62356866 62356889 -139971458 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 62357076 62357101 -139971246 + AT_rich Low_complexity Low_complexity 1 25 0 768 229 24 65 chr4 62357101 62357359 -139970988 + L1MC3 LINE L1 4684 4952 -1194 1613 259 49 76 chr4 62357415 62358205 -139970142 + L1MC3 LINE L1 5847 6615 -1170 326 221 54 0 chr4 62358219 62358368 -139969979 + (TA)n Simple_repeat Simple_repeat 2 158 0 291 104 0 0 chr4 62358368 62358416 -139969931 + (GA)n Simple_repeat Simple_repeat 2 49 0 481 308 68 0 chr4 62358425 62358571 -139969776 + L1MC3 LINE L1 6673 6828 -957 187 314 121 48 chr4 62358970 62359094 -139969253 + L2 LINE L2 3140 3272 0 566 258 48 30 chr4 62360762 62360929 -139967418 + MER5A DNA MER1_type 7 176 -13 223 284 12 0 chr4 62360944 62361025 -139967322 + GA-rich Low_complexity Low_complexity 1 82 0 1959 154 0 0 chr4 62361972 62362283 -139966064 - AluSx SINE Alu -1 311 1 32 57 0 0 chr4 62362900 62362953 -139965394 + AT_rich Low_complexity Low_complexity 1 53 0 300 301 35 18 chr4 62363515 62363628 -139964719 - MIR SINE MIR -72 190 76 1149 209 37 34 chr4 62364906 62365232 -139963115 + pTR5 LTR ERV1 741 1067 -1371 * 3875 111 97 115 chr4 62365222 62366115 -139962232 + pTR5 LTR ERV1 1355 2438 0 282 309 31 63 chr4 62366924 62367115 -139961232 + L2 LINE L2 3116 3300 -13 791 158 0 43 chr4 62369785 62369924 -139958423 - FLAM_A SINE Alu 0 133 1 28 29 0 0 chr4 62370488 62370523 -139957824 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr4 62370727 62370758 -139957589 + AT_rich Low_complexity Low_complexity 1 31 0 2109 124 3 10 chr4 62370848 62371155 -139957192 + AluSq SINE Alu 1 305 -8 26 30 0 0 chr4 62371271 62371304 -139957043 + AT_rich Low_complexity Low_complexity 1 33 0 24 77 0 0 chr4 62372044 62372096 -139956251 + AT_rich Low_complexity Low_complexity 1 52 0 1571 182 7 25 chr4 62372194 62372480 -139955867 + AluJo SINE Alu 12 292 -20 2186 99 0 0 chr4 62372835 62373160 -139955187 - AluY SINE Alu 0 325 1 225 0 0 0 chr4 62373559 62373584 -139954763 + (TG)n Simple_repeat Simple_repeat 2 26 0 290 128 0 0 chr4 62374778 62374825 -139953522 - MADE1 DNA Mariner -33 47 1 1237 177 145 8 chr4 62375080 62375543 -139952804 - LTR69 LTR ERVL 0 588 1 481 283 52 40 chr4 62376670 62376746 -139951601 - LTR16C LTR ERVL -39 452 378 2215 68 7 0 chr4 62376746 62377025 -139951322 + AluY SINE Alu 23 303 -8 481 283 52 40 chr4 62377025 62377235 -139951112 - LTR16C LTR ERVL -113 378 102 25 51 0 0 chr4 62377235 62377274 -139951073 + AT_rich Low_complexity Low_complexity 1 39 0 1809 325 76 23 chr4 62377639 62378511 -139949836 - L2 LINE L2 -676 2638 1721 208 143 0 0 chr4 62379018 62379053 -139949294 + (A)n Simple_repeat Simple_repeat 1 35 0 443 350 27 30 chr4 62379906 62380015 -139948332 - MIR SINE MIR 0 262 154 1615 208 11 19 chr4 62380015 62380381 -139947966 + MER47A DNA MER2_type 4 366 0 443 350 27 30 chr4 62380381 62380534 -139947813 - MIR SINE MIR -108 154 1 256 221 52 26 chr4 62381571 62381648 -139946699 - L1MA10 LINE L1 -14 6320 6242 422 312 0 0 chr4 62381827 62381965 -139946382 - L1ME LINE L1 -343 5823 5686 2803 7 0 0 chr4 62382386 62382696 -139945651 + AluYa5 SINE Alu 1 310 -1 2026 130 0 0 chr4 62382705 62382998 -139945349 + AluSc SINE Alu 2 294 -15 1817 261 108 37 chr4 62383001 62383901 -139944446 - MER69B DNA AcHobo -1368 1158 126 7942 86 4 8 chr4 62383901 62384977 -139943370 - MER11C LTR ERVK 0 1071 1 1817 261 108 37 chr4 62384977 62385111 -139943236 - MER69B DNA AcHobo -2400 126 3 308 315 84 55 chr4 62385235 62385616 -139942731 - MLT1I LTR MaLR -2 407 16 2018 114 0 0 chr4 62386713 62386986 -139941361 - AluSc SINE Alu -26 283 11 26 30 0 0 chr4 62387276 62387309 -139941038 + AT_rich Low_complexity Low_complexity 1 33 0 462 310 63 42 chr4 62387933 62388050 -139940297 + MIR SINE MIR 19 132 -130 1946 186 60 27 chr4 62388050 62388464 -139939883 + MSTA LTR MaLR 1 428 0 462 310 63 42 chr4 62388464 62388585 -139939762 + MIR SINE MIR 132 262 0 713 177 8 0 chr4 62390098 62390221 -139938126 - Charlie3 DNA MER1_type -4 2706 2583 2180 131 6 9 chr4 62390221 62390558 -139937789 - LTR22A LTR ERVK 0 458 123 1032 70 0 51 chr4 62390565 62390721 -139937626 + L1P LINE L1 1697 1844 -4302 417 54 0 0 chr4 62390721 62390777 -139937570 + (TATG)n Simple_repeat Simple_repeat 2 57 0 1267 136 11 0 chr4 62390777 62390961 -139937386 - AluSg/x SINE Alu -25 287 102 1770 119 0 0 chr4 62390961 62391229 -139937118 + L1P LINE L1 2183 2450 -3696 1596 196 10 7 chr4 62391317 62391623 -139936724 + AluJo SINE Alu 1 307 -5 195 42 0 0 chr4 62392547 62392571 -139935776 + (T)n Simple_repeat Simple_repeat 1 24 0 304 60 20 0 chr4 62392571 62392621 -139935726 + MSTA LTR MaLR 351 401 -27 915 9 72 0 chr4 62392648 62392759 -139935588 - L1PA3 LINE L1 -3 6152 6034 21 36 0 0 chr4 62393213 62393241 -139935106 + AT_rich Low_complexity Low_complexity 1 28 0 1037 186 61 109 chr4 62393796 62394107 -139934240 + AluJo SINE Alu 1 296 -6 355 134 0 88 chr4 62395983 62396177 -139932170 + (TA)n Simple_repeat Simple_repeat 1 177 0 29 47 0 0 chr4 62396210 62396253 -139932094 + AT_rich Low_complexity Low_complexity 1 43 0 249 210 0 0 chr4 62396931 62396993 -139931354 + (TA)n Simple_repeat Simple_repeat 2 63 0 29 28 0 0 chr4 62397130 62397166 -139931181 + AT_rich Low_complexity Low_complexity 1 36 0 309 275 22 0 chr4 62397337 62397428 -139930919 + L1ME4a LINE L1 5611 5703 -418 355 292 29 112 chr4 62398186 62398463 -139929884 - L2 LINE L2 -117 3196 2943 1313 240 66 51 chr4 62398479 62398569 -139929778 - Charlie1b DNA MER1_type -2238 523 436 1747 178 56 0 chr4 62398569 62398911 -139929436 + MER46B DNA MER2_type 1 236 0 1313 240 66 51 chr4 62398911 62399333 -139929014 - Charlie1b DNA MER1_type -2325 436 3 593 296 58 36 chr4 62399405 62399682 -139928665 - L2 LINE L2 -444 2870 2588 302 280 90 75 chr4 62400093 62400425 -139927922 + L1ME4a LINE L1 5779 6115 -6 2364 88 3 0 chr4 62400595 62400900 -139927447 - AluSp SINE Alu -7 306 1 34 79 0 0 chr4 62400938 62401014 -139927333 + AT_rich Low_complexity Low_complexity 1 76 0 2025 167 61 15 chr4 62402418 62402919 -139925428 + LTR27 LTR ERV1 3 501 0 464 221 26 0 chr4 62403012 62403166 -139925181 + (TA)n Simple_repeat Simple_repeat 1 158 0 310 225 34 34 chr4 62403170 62403259 -139925088 + L1MC4 LINE L1 6614 6702 -1340 792 157 25 5 chr4 62403279 62403690 -139924657 + (TA)n Simple_repeat Simple_repeat 1 419 0 307 213 40 13 chr4 62403691 62403766 -139924581 + L1MC3 LINE L1 6570 6646 -1139 2005 122 0 7 chr4 62404223 62404511 -139923836 + AluSg SINE Alu 1 286 -24 24 0 0 0 chr4 62404511 62404535 -139923812 + AT_rich Low_complexity Low_complexity 1 24 0 494 236 155 0 chr4 62404776 62404896 -139923451 + MER58 DNA MER1_type 1 154 -187 1836 126 4 0 chr4 62404896 62405150 -139923197 + AluSx SINE Alu 1 255 -57 494 236 155 0 chr4 62405150 62405190 -139923157 + MER58 DNA MER1_type 154 186 -155 434 264 77 10 chr4 62405193 62405385 -139922962 - L1MB5 LINE L1 -12 6162 5946 1297 144 89 19 chr4 62405583 62405853 -139922494 - L1MB1 LINE L1 -11 6157 5869 673 247 7 0 chr4 62405850 62406035 -139922312 + L1MB1 LINE L1 5694 5857 -311 * 3609 269 39 14 chr4 62407139 62408489 -139919858 - L1MCb LINE L1 -4849 1196 30 316 149 81 40 chr4 62408588 62408662 -139919685 - MADE1 DNA Mariner 0 80 4 263 71 24 0 chr4 62409123 62409165 -139919182 + (TG)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr4 62409580 62409602 -139918745 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr4 62409830 62409862 -139918485 + AT_rich Low_complexity Low_complexity 1 32 0 27 62 0 0 chr4 62409951 62409999 -139918348 + AT_rich Low_complexity Low_complexity 1 48 0 27 29 0 0 chr4 62410081 62410115 -139918232 + AT_rich Low_complexity Low_complexity 1 34 0 2230 176 24 0 chr4 62410151 62410565 -139917782 - L1PA16 LINE L1 -10 6156 5733 1521 266 60 4 chr4 62410799 62410994 -139917353 - L1MD3 LINE L1 -14 7981 7798 5843 107 3 11 chr4 62410994 62412124 -139916223 - L1PA13 LINE L1 0 6163 5029 1521 266 60 4 chr4 62412124 62412379 -139915968 - L1MD3 LINE L1 -197 7798 7506 267 313 60 48 chr4 62412410 62412767 -139915580 - L1MCa LINE L1 -5066 1541 981 811 270 59 70 chr4 62412768 62413212 -139915135 + L1MB8 LINE L1 5724 6162 -16 221 301 9 26 chr4 62415122 62415235 -139913112 + (TATATG)n Simple_repeat Simple_repeat 3 113 0 28 0 0 0 chr4 62415260 62415288 -139913059 + AT_rich Low_complexity Low_complexity 1 28 0 207 221 91 65 chr4 62415886 62415963 -139912384 - MIR SINE MIR -102 160 82 2671 100 3 11 chr4 62416893 62417264 -139911083 - THE1C LTR MaLR -7 368 1 322 275 0 0 chr4 62417310 62417390 -139910957 - MLT1I LTR MaLR -232 177 98 184 275 29 14 chr4 62418516 62418585 -139909762 + MIR SINE MIR 82 151 -111 22 56 0 0 chr4 62418617 62418653 -139909694 + AT_rich Low_complexity Low_complexity 1 36 0 7812 19 0 0 chr4 62418655 62419597 -139908750 - L1PA2 LINE L1 0 6155 5214 1886 48 0 15 chr4 62419599 62420072 -139908275 + L1P LINE L1 551 1144 -5002 227 348 0 34 chr4 62420087 62420205 -139908142 - MLT1K LTR MaLR -92 496 383 410 262 66 52 chr4 62421242 62421513 -139906834 - HAL1 LINE L1 -1014 1493 1219 1508 166 35 26 chr4 62421845 62422158 -139906189 - L1 LINE L1 -2311 3835 3520 622 172 0 0 chr4 62422175 62422291 -139906056 + L1MA9 LINE L1 6190 6305 -7 722 256 45 54 chr4 62422410 62422652 -139905695 - MIR SINE MIR -1 261 22 1214 239 40 43 chr4 62422945 62423296 -139905051 - MLT1A1 LTR MaLR -5 360 11 217 196 39 0 chr4 62423868 62423919 -139904428 + (TATATG)n Simple_repeat Simple_repeat 1 53 0 306 0 0 0 chr4 62423919 62423953 -139904394 + (TG)n Simple_repeat Simple_repeat 2 35 0 1446 242 65 11 chr4 62423954 62424388 -139903959 + MER31B LTR ERV1 2 458 -8 3125 194 170 150 chr4 62424439 62425451 -139902896 + MER31B-int LTR ERV1 15 1005 -3931 664 206 0 37 chr4 62425451 62425587 -139902760 - FAM SINE Alu -53 132 2 3125 194 170 150 chr4 62425587 62426630 -139901717 + MER31B-int LTR ERV1 1005 2250 -2686 368 348 14 0 chr4 62427483 62427624 -139900723 + MIR3 SINE MIR 64 206 -2 1740 134 0 0 chr4 62427863 62428110 -139900237 - AluSc SINE Alu -33 276 30 184 216 98 0 chr4 62428354 62428405 -139899942 + MIR SINE MIR 206 261 -1 602 51 13 0 chr4 62430588 62430667 -139897680 - MADE1 DNA Mariner 0 80 1 1774 213 37 76 chr4 62431242 62431723 -139896624 + MLT2B1 LTR ERVL 1 499 -21 12774 163 29 15 chr4 62431723 62434108 -139894239 + Tigger1 DNA MER2_type 1 2418 0 1774 213 37 76 chr4 62434108 62434125 -139894222 + MLT2B1 LTR ERVL 499 480 -40 385 70 14 14 chr4 62434125 62434196 -139894151 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 1774 213 37 76 chr4 62434196 62434237 -139894110 + MLT2B1 LTR ERVL 479 520 0 1810 167 6 10 chr4 62434256 62434568 -139893779 + AluSx SINE Alu 1 311 -1 27 96 0 0 chr4 62436163 62436246 -139892101 + AT_rich Low_complexity Low_complexity 1 83 0 22 0 0 0 chr4 62436972 62436994 -139891353 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 62437184 62437215 -139891132 + AT_rich Low_complexity Low_complexity 1 31 0 1252 245 71 7 chr4 62437683 62437993 -139890354 - LTR53 LTR ERVL -18 501 172 631 138 100 0 chr4 62438000 62438130 -139890217 + L1MC2 LINE L1 5797 5939 -405 * 2736 239 22 18 chr4 62438109 62438882 -139889465 + L1M4 LINE L1 4459 5234 -912 26 50 0 0 chr4 62439128 62439168 -139889179 + AT_rich Low_complexity Low_complexity 1 40 0 574 301 12 6 chr4 62439657 62439820 -139888527 + MIR SINE MIR 14 177 -85 27 49 0 0 chr4 62440150 62440191 -139888156 + AT_rich Low_complexity Low_complexity 1 41 0 795 277 79 63 chr4 62441104 62441801 -139886546 + L1M4c LINE L1 1106 1813 -4571 244 244 89 55 chr4 62441895 62442186 -139886161 + L1M4c LINE L1 2160 2460 -3924 1771 254 52 103 chr4 62442206 62442735 -139885612 + L1M4c LINE L1 2516 3070 -3312 2221 123 0 0 chr4 62442735 62443045 -139885302 + AluSg SINE Alu 1 310 0 1771 254 52 103 chr4 62443045 62444106 -139884241 + L1M4c LINE L1 3070 4025 -2357 1942 274 33 19 chr4 62444110 62444261 -139884086 - L1M4 LINE L1 -1318 4828 4681 2543 102 8 0 chr4 62444261 62444613 -139883734 - THE1A LTR MaLR 0 355 1 1942 274 33 19 chr4 62444613 62445299 -139883048 - L1M4 LINE L1 -1465 4681 3979 939 360 85 30 chr4 62446774 62447677 -139880670 + L2 LINE L2 1739 2691 -623 24 91 0 0 chr4 62447994 62448060 -139880287 + AT_rich Low_complexity Low_complexity 1 66 0 195 236 0 73 chr4 62448275 62448330 -139880017 - MIR SINE MIR -142 120 70 306 198 81 12 chr4 62448400 62448486 -139879861 - MIR SINE MIR -106 156 65 31 0 0 0 chr4 62448594 62448625 -139879722 + AT_rich Low_complexity Low_complexity 1 31 0 266 258 0 0 chr4 62448936 62449002 -139879345 - MLT1K LTR MaLR 0 588 523 564 203 110 0 chr4 62449313 62449431 -139878916 + FRAM SINE Alu 28 158 -18 546 256 8 8 chr4 62451690 62451811 -139876536 + FLAM_C SINE Alu 1 121 -22 22 0 0 0 chr4 62451925 62451947 -139876400 + AT_rich Low_complexity Low_complexity 1 22 0 901 162 0 0 chr4 62452411 62452559 -139875788 + L1MA3 LINE L1 6157 6304 -1 1521 195 3 0 chr4 62454262 62454567 -139873780 + AluJb SINE Alu 1 306 0 230 347 16 24 chr4 62454642 62454766 -139873581 - MLT1L LTR MaLR -132 483 361 1163 263 100 11 chr4 62455676 62456216 -139872131 - L1ME LINE L1 -5182 888 301 255 284 189 8 chr4 62456914 62457041 -139871306 - MER5A DNA MER1_type -3 186 37 1271 322 71 16 chr4 62457475 62458052 -139870295 - MLT2E LTR ERVL -4 624 16 7066 45 29 0 chr4 62458747 62459619 -139868728 + MER11D LTR ERVK 1 897 0 1152 140 189 45 chr4 62459699 62459816 -139868531 + AluSx SINE Alu 1 100 -202 186 43 0 0 chr4 62459816 62459839 -139868508 + (CA)n Simple_repeat Simple_repeat 2 24 0 1152 140 189 45 chr4 62459839 62459985 -139868362 + AluSx SINE Alu 100 302 0 21 0 0 0 chr4 62460696 62460717 -139867630 + AT_rich Low_complexity Low_complexity 1 21 0 1914 246 89 110 chr4 62461652 62461912 -139866435 + L1M4 LINE L1 2 266 -6276 1480 182 26 36 chr4 62461912 62462219 -139866128 + AluJo SINE Alu 3 306 -6 1914 246 89 110 chr4 62462219 62462570 -139865777 + L1M4 LINE L1 266 623 -5919 232 200 0 0 chr4 62462570 62462620 -139865727 + LTR62 LTR ERVK 629 678 -41 1914 246 89 110 chr4 62462620 62463005 -139865342 + L1M4 LINE L1 623 1026 -5516 1374 242 32 43 chr4 62463022 62463571 -139864776 + L1M4 LINE L1 1225 1767 -4833 518 280 0 7 chr4 62463583 62463726 -139864621 + L1M4 LINE L1 3113 3254 -3390 1787 272 25 21 chr4 62463837 62464290 -139864057 + L1M4 LINE L1 3549 4008 -2636 360 0 0 0 chr4 62464290 62464330 -139864017 + (CA)n Simple_repeat Simple_repeat 1 40 0 1787 272 25 21 chr4 62464330 62464651 -139863696 + L1M4 LINE L1 4008 4326 -2318 880 175 23 11 chr4 62464651 62464828 -139863519 - MLT1D LTR MaLR 0 505 327 737 336 39 59 chr4 62464855 62465521 -139862826 - L2 LINE L2 0 3313 2668 417 353 141 29 chr4 62465523 62466037 -139862310 + L2 LINE L2 2616 3194 -78 26 30 0 0 chr4 62466828 62466861 -139861486 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr4 62467509 62467532 -139860815 + AT_rich Low_complexity Low_complexity 1 23 0 2453 119 3 16 chr4 62467778 62468155 -139860192 - THE1C LTR MaLR -3 372 1 9464 135 42 7 chr4 62468155 62469682 -139858665 - THE1C-int LTR MaLR 0 1580 1 2153 163 13 13 chr4 62469682 62470057 -139858290 - THE1C LTR MaLR 0 375 1 7186 110 5 19 chr4 62470285 62471372 -139856975 - MER11C LTR ERVK 0 1071 1 286 336 46 30 chr4 62473364 62473495 -139854852 + MIR3 SINE MIR 38 170 -38 875 181 11 6 chr4 62473500 62473677 -139854670 - L1MC3 LINE L1 -103 7682 7505 629 216 7 11 chr4 62473692 62473960 -139854387 + CT-rich Low_complexity Low_complexity 1 266 0 320 176 15 0 chr4 62473977 62474045 -139854302 + CT-rich Low_complexity Low_complexity 5 73 0 916 223 109 8 chr4 62474071 62474327 -139854020 - L1MC3 LINE L1 -313 7472 7191 422 40 40 14 chr4 62474368 62474442 -139853905 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 363 319 14 28 chr4 62474756 62474897 -139853450 - MER5A DNA MER1_type -49 140 2 308 327 164 0 chr4 62474968 62475127 -139853220 + MIR SINE MIR 78 262 0 501 138 37 88 chr4 62476007 62476224 -139852123 + Zaphod DNA AcHobo 770 975 -3056 201 74 0 0 chr4 62476783 62476810 -139851537 + (TG)n Simple_repeat Simple_repeat 2 28 0 3071 115 20 0 chr4 62476956 62477400 -139850947 + MLT2A2 LTR ERVL 1 453 0 5467 144 3 2 chr4 62477813 62479145 -139849202 + L1PA16 LINE L1 4812 6149 -17 403 258 89 36 chr4 62479472 62479697 -139848650 - L1M4 LINE L1 -892 5254 5018 616 229 26 56 chr4 62479754 62479985 -139848362 - L1M4 LINE L1 -1396 4750 4527 1255 309 66 24 chr4 62480090 62480715 -139847632 + L1ME3 LINE L1 5511 6161 -1 368 308 100 43 chr4 62480828 62481180 -139847167 + HAL1 LINE L1 684 1014 -1493 289 61 20 20 chr4 62481180 62481229 -139847118 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 368 308 100 43 chr4 62481229 62481505 -139846842 + HAL1 LINE L1 1014 1348 -1159 1740 156 30 54 chr4 62481539 62481910 -139846437 + THE1B LTR MaLR 1 362 -2 10987 113 3 3 chr4 62481912 62483492 -139844855 + THE1A-int LTR MaLR 1 1580 0 1764 134 13 62 chr4 62483492 62483865 -139844482 + THE1A LTR MaLR 1 355 0 556 320 150 3 chr4 62483867 62484161 -139844186 + HAL1 LINE L1 1563 1899 -608 36 87 0 0 chr4 62485065 62485157 -139843190 + AT_rich Low_complexity Low_complexity 1 92 0 221 0 0 33 chr4 62485162 62485192 -139843155 + (TTAAA)n Simple_repeat Simple_repeat 1 29 0 796 233 113 1 chr4 62485232 62485529 -139842818 + MER58 DNA MER1_type 10 2416 -4 24 67 0 0 chr4 62486446 62486491 -139841856 + AT_rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr4 62486669 62486700 -139841647 + AT_rich Low_complexity Low_complexity 1 31 0 870 140 0 22 chr4 62487724 62487860 -139840487 + FLAM_C SINE Alu 11 143 0 1759 160 10 10 chr4 62488286 62488434 -139839913 - L1PB1 LINE L1 -64 6087 5940 2230 162 88 58 chr4 62488434 62489097 -139839250 - L1MA4 LINE L1 -360 5791 5329 352 104 30 0 chr4 62489097 62489164 -139839183 + L1PB1 LINE L1 6081 6149 -2 1335 202 47 4 chr4 62489179 62489436 -139838911 + AluJo SINE Alu 1 268 -44 962 221 97 38 chr4 62489447 62489714 -139838633 + MSTD LTR MaLR 105 387 -9 2510 225 36 20 chr4 62489717 62490362 -139837985 + L1ME1 LINE L1 5449 6103 -63 462 170 0 71 chr4 62490368 62490480 -139837867 + L1MA9 LINE L1 6209 6312 0 23 0 0 0 chr4 62490480 62490503 -139837844 + AT_rich Low_complexity Low_complexity 1 23 0 10046 46 2 1 chr4 62490713 62491978 -139836369 - L1PA4 LINE L1 -2468 3678 2413 * 14022 40 5 0 chr4 62491976 62494319 -139834028 + L1PA4 LINE L1 3667 6020 -135 2754 85 0 0 chr4 62494333 62494699 -139833648 - L1P LINE L1 -1796 4350 3985 1088 44 0 0 chr4 62494699 62494824 -139833523 + L1PA4 LINE L1 6020 6155 0 35 0 0 0 chr4 62495166 62495201 -139833146 + AT_rich Low_complexity Low_complexity 1 35 0 788 180 17 17 chr4 62495240 62495412 -139832935 + ALR/Alpha Satellite centromeric 1 172 0 348 24 0 0 chr4 62495685 62495726 -139832621 + (CA)n Simple_repeat Simple_repeat 2 42 0 30 27 0 0 chr4 62495768 62495805 -139832542 + AT_rich Low_complexity Low_complexity 1 37 0 6620 73 0 5 chr4 62496018 62496956 -139831391 - L1PA7 LINE L1 -4 6150 5216 798 11 0 0 chr4 62496956 62497046 -139831301 - L1PA3 LINE L1 -266 5889 5800 2054 50 0 4 chr4 62497046 62497326 -139831021 + L1PA3 LINE L1 5896 6155 0 8736 106 17 9 chr4 62497326 62498650 -139829697 - L1PA7 LINE L1 -922 5224 3891 23 0 0 0 chr4 62500501 62500524 -139827823 + AT_rich Low_complexity Low_complexity 1 23 0 225 383 106 0 chr4 62500825 62500966 -139827381 - MER102a DNA MER1_type -3 327 172 440 182 0 10 chr4 62501280 62501379 -139826968 - AluSc SINE Alu 0 309 212 25 51 0 0 chr4 62501531 62501570 -139826777 + AT_rich Low_complexity Low_complexity 1 39 0 376 299 108 34 chr4 62503197 62503465 -139824882 - L2 LINE L2 -90 3223 2936 21 0 0 0 chr4 62503717 62503738 -139824609 + AT_rich Low_complexity Low_complexity 1 21 0 2928 256 48 66 chr4 62503767 62503988 -139824359 + L1ME LINE L1 3645 3868 -2298 1499 242 19 3 chr4 62503988 62504347 -139824000 - MLT1A1 LTR MaLR 0 365 1 2928 256 48 66 chr4 62504347 62506258 -139822089 + L1ME LINE L1 3868 5733 -433 237 132 0 0 chr4 62506522 62506560 -139821787 + (CA)n Simple_repeat Simple_repeat 1 38 0 2417 55 0 10 chr4 62507809 62508120 -139820227 - AluY SINE Alu -3 308 1 299 109 55 0 chr4 62508848 62508903 -139819444 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 1642 251 44 13 chr4 62709508 62709958 -139618389 + MLT1C LTR MaLR 4 467 0 365 262 97 68 chr4 62710049 62710527 -139617820 - L1MEc LINE L1 -3613 2602 2151 6598 63 2 3 chr4 62710630 62711490 -139616857 + L1PA6 LINE L1 5296 6154 0 753 291 5 0 chr4 62711492 62711715 -139616632 + L1MD3 LINE L1 7413 7636 -359 252 0 0 0 chr4 62711859 62711887 -139616460 + (CA)n Simple_repeat Simple_repeat 1 28 0 225 0 0 0 chr4 62712047 62712072 -139616275 + (T)n Simple_repeat Simple_repeat 1 25 0 426 298 166 10 chr4 62713025 62713230 -139615117 + L1MEc LINE L1 1900 2136 -4260 8255 184 31 17 chr4 62713232 62713390 -139614957 - Tigger2 DNA MER2_type 0 2718 2564 207 0 0 0 chr4 62713390 62713413 -139614934 + (TG)n Simple_repeat Simple_repeat 2 24 0 192 77 0 0 chr4 62713412 62713438 -139614909 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 8255 184 31 17 chr4 62713413 62714846 -139613501 - Tigger2 DNA MER2_type -154 2564 1131 820 205 54 0 chr4 62714845 62715030 -139613317 - Tigger2 DNA MER2_type -2523 195 1 * 660 307 46 14 chr4 62715243 62715523 -139612824 - MER87 LTR ERV1 -24 517 229 23 0 0 0 chr4 62715525 62715548 -139612799 + AT_rich Low_complexity Low_complexity 1 23 0 7564 214 26 21 chr4 62715562 62717519 -139610828 - L1M LINE L1 -859 5287 3344 1421 112 0 36 chr4 62717519 62717742 -139610605 + MLT2A1 LTR ERVL 1 215 -229 547 190 30 0 chr4 62717852 62717952 -139610395 + MLT1B LTR MaLR 288 390 0 258 239 70 14 chr4 62717953 62718024 -139610323 + MER67D LTR ERV1 440 514 0 426 260 60 47 chr4 62718467 62718594 -139609753 - MER45 DNA AcHobo -781 172 41 1860 241 48 43 chr4 62718594 62719203 -139609144 + LTR9 LTR ERV1 1 612 0 426 260 60 47 chr4 62719203 62719225 -139609122 - MER45 DNA AcHobo -912 41 21 821 193 40 0 chr4 62719365 62719515 -139608832 + FAM SINE Alu 12 167 -18 617 310 37 26 chr4 62719552 62719820 -139608527 - L2 LINE L2 -742 2572 2302 26 30 0 0 chr4 62720113 62720146 -139608201 + AT_rich Low_complexity Low_complexity 1 33 0 184 314 57 0 chr4 62720207 62720277 -139608070 - MER5B DNA MER1_type 0 178 105 2860 124 26 13 chr4 62720354 62720812 -139607535 + MER4C LTR ERV1 2 465 0 8000 247 17 18 chr4 62721102 62723610 -139604737 + L1PA12 LINE L1 1184 4501 -3083 549 288 11 54 chr4 62723757 62723941 -139604406 - MER58A DNA MER1_type -28 196 21 240 265 0 36 chr4 62724051 62724134 -139604213 + CT-rich Low_complexity Low_complexity 1 80 0 230 252 76 8 chr4 62724582 62724701 -139603646 + L1MC/D LINE L1 5784 5910 -1898 240 194 0 0 chr4 62724713 62724721 -139603626 + (TA)n Simple_repeat Simple_repeat 2 9 -59 1457 228 3 0 chr4 62724721 62725010 -139603337 + AluJo SINE Alu 1 290 -22 240 194 0 0 chr4 62725010 62725068 -139603279 + (TA)n Simple_repeat Simple_repeat 8 68 0 903 78 16 0 chr4 62725263 62725392 -139602955 - MER11B LTR ERVK -96 1140 1010 27 49 0 0 chr4 62726015 62726056 -139602291 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr4 62726336 62726361 -139601986 + AT_rich Low_complexity Low_complexity 1 25 0 1519 17 0 0 chr4 62727087 62727264 -139601083 - L1PA4 LINE L1 -167 5988 5812 1305 19 38 0 chr4 62727264 62727421 -139600926 + L1PA4 LINE L1 5987 6152 -3 42844 31 21 1 chr4 62729058 62735088 -139593259 - L1HS LINE L1 0 6155 4 1757 322 66 20 chr4 62735596 62736432 -139591915 + L2 LINE L2 1812 2685 -629 233 283 33 22 chr4 62736461 62736553 -139591794 + L1MB7 LINE L1 4740 4832 -1314 6062 157 22 4 chr4 62736588 62737901 -139590446 - L1MA3 LINE L1 -1 6304 4970 2998 230 62 34 chr4 62737899 62738079 -139590268 + L1MB7 LINE L1 4939 5113 -1071 * 180 0 0 0 chr4 62738079 62738099 -139590248 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 2998 230 62 34 chr4 62738099 62739119 -139589228 + L1MB7 LINE L1 5113 6177 -7 21 71 0 0 chr4 62739198 62739240 -139589107 + AT_rich Low_complexity Low_complexity 1 42 0 33 56 0 0 chr4 62739857 62739911 -139588436 + AT_rich Low_complexity Low_complexity 1 54 0 336 320 39 0 chr4 62740373 62740501 -139587846 + LTR16B LTR ERVL 191 323 -141 22 0 0 0 chr4 62741567 62741589 -139586758 + AT_rich Low_complexity Low_complexity 1 22 0 238 103 0 26 chr4 62741690 62741729 -139586618 + MLT2A2 LTR ERVL 416 453 0 18464 196 29 32 chr4 62741730 62743448 -139584899 - L1 LINE L1 -2799 4766 3044 2025 120 3 10 chr4 62743448 62743777 -139584570 - AluSx SINE Alu 0 312 1 18464 196 29 32 chr4 62743777 62746829 -139581518 - L1 LINE L1 -4521 3044 12 1241 27 0 0 chr4 62746917 62747065 -139581282 - L1PA5 LINE L1 -8 6146 5999 591 245 0 14 chr4 62747171 62747314 -139581033 - L1MC1 LINE L1 -223 6110 5970 2122 169 52 2 chr4 62747452 62747860 -139580487 + MSTA LTR MaLR 1 428 0 446 272 64 5 chr4 62747958 62748160 -139580187 + L1ME4a LINE L1 5692 5905 -216 22 0 0 0 chr4 62748245 62748267 -139580080 + AT_rich Low_complexity Low_complexity 1 22 0 1274 242 67 42 chr4 62748547 62748998 -139579349 - MLT1C LTR MaLR 0 467 6 275 325 80 43 chr4 62749053 62749241 -139579106 + L2 LINE L2 2965 3159 -154 411 292 92 29 chr4 62749388 62749832 -139578515 - L1ME3A LINE L1 -208 5962 5483 397 316 38 17 chr4 62749938 62750309 -139578038 - L1ME3A LINE L1 -746 5416 5038 328 303 68 30 chr4 62750582 62750714 -139577633 - L2 LINE L2 -2 3311 3175 252 345 62 36 chr4 62750744 62750938 -139577409 + L2 LINE L2 3014 3212 -101 1703 264 15 58 chr4 62751176 62751714 -139576633 - MLT2B1 LTR ERVL -4 516 2 21 57 0 0 chr4 62752937 62752972 -139575375 + AT_rich Low_complexity Low_complexity 1 35 0 315 0 0 0 chr4 62754170 62754205 -139574142 + (TG)n Simple_repeat Simple_repeat 1 35 0 25 31 0 0 chr4 62754695 62754727 -139573620 + AT_rich Low_complexity Low_complexity 1 32 0 2301 78 20 0 chr4 62754793 62755222 -139573125 - L1PA7 LINE L1 -585 5569 5135 4354 67 9 0 chr4 62755222 62755787 -139572560 + L1PA7 LINE L1 5579 6151 -3 2018 220 77 10 chr4 62755863 62756386 -139571961 - Tigger6a DNA MER2_type -230 853 296 475 341 83 40 chr4 62756890 62757371 -139570976 + LTR33 LTR ERVL 20 521 0 222 298 73 24 chr4 62757378 62757502 -139570845 - MIR SINE MIR -18 244 115 716 212 32 26 chr4 62757507 62757696 -139570651 + MLT1B LTR MaLR 18 207 -183 234 263 30 91 chr4 62757711 62757810 -139570537 + MER21B LTR ERV1 12 104 -759 1193 280 45 29 chr4 62757812 62758189 -139570158 + MER21B LTR ERV1 19 388 -475 1753 158 11 0 chr4 62758189 62758537 -139569810 + AluSx SINE Alu 1 351 0 1193 280 45 29 chr4 62758537 62758844 -139569503 + MER21B LTR ERV1 388 794 -69 1067 148 16 11 chr4 62758886 62759068 -139569279 + MLT1B LTR MaLR 205 387 -3 446 312 40 36 chr4 62759315 62759562 -139568785 - MIR SINE MIR -8 254 7 268 359 7 62 chr4 62759915 62760060 -139568287 + L2 LINE L2 3175 3311 -2 26 30 0 0 chr4 62760062 62760095 -139568252 + AT_rich Low_complexity Low_complexity 1 33 0 1440 159 41 41 chr4 62760561 62760876 -139567471 - MER46B DNA MER2_type -6 230 41 21 36 0 0 chr4 62762284 62762312 -139566035 + AT_rich Low_complexity Low_complexity 1 28 0 221 339 71 27 chr4 62764243 62764355 -139563992 + MIR SINE MIR 21 137 -125 211 449 0 0 chr4 62764353 62764480 -139563867 - MIR SINE MIR -114 148 22 * 235 382 71 0 chr4 62764809 62764979 -139563368 + L2 LINE L2 994 1175 -2139 185 269 135 0 chr4 62765377 62765429 -139562918 - MIR SINE MIR -152 110 52 1759 243 81 2 chr4 62765436 62765864 -139562483 + MLT2B1 LTR ERVL 1 473 -47 186 43 0 0 chr4 62765864 62765887 -139562460 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1759 243 81 2 chr4 62765887 62765940 -139562407 + MLT2B1 LTR ERVL 473 520 0 3041 145 14 257 chr4 62766063 62766730 -139561617 + L1P4 LINE L1 3017 3457 -2689 1740 148 37 17 chr4 62766730 62767027 -139561320 + MER4C LTR ERV1 2 304 -161 3041 145 14 257 chr4 62767027 62767622 -139560725 + L1P4 LINE L1 3457 4195 -1951 992 95 3 33 chr4 62767623 62767937 -139560410 + (GAAA)n Simple_repeat Simple_repeat 1 304 0 807 126 6 33 chr4 62767955 62768138 -139560209 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 6068 154 20 9 chr4 62768138 62769793 -139558554 + L1P4 LINE L1 4154 5820 -348 24 0 0 0 chr4 62770133 62770157 -139558190 + AT_rich Low_complexity Low_complexity 1 24 0 1392 199 30 26 chr4 62771675 62771977 -139556370 - AluJo SINE Alu -9 303 1 903 239 60 20 chr4 62772465 62772734 -139555613 + MLT1F LTR MaLR 268 605 -49 1951 158 125 3 chr4 62773625 62773992 -139554355 + MER61C LTR ERV1 23 434 0 21 0 0 0 chr4 62774515 62774536 -139553811 + AT_rich Low_complexity Low_complexity 1 21 0 1244 202 150 25 chr4 62775076 62775517 -139552830 + LTR54B LTR ERV1 1 496 -2 1205 320 58 21 chr4 62776446 62777003 -139551344 + ERVL LTR ERVL 2640 3216 -2548 1418 191 57 27 chr4 62777478 62777863 -139550484 + MER67C LTR ERV1 5 403 -240 827 215 15 15 chr4 62777953 62778153 -139550194 + MLT1B LTR MaLR 4 203 -187 2088 143 0 0 chr4 62778260 62778622 -139549725 - AluSx SINE Alu 0 364 3 288 388 71 15 chr4 62778751 62778947 -139549400 - MIR SINE MIR -55 207 1 297 0 0 0 chr4 62779118 62779151 -139549196 + (TG)n Simple_repeat Simple_repeat 1 33 0 781 280 47 0 chr4 62780940 62781154 -139547193 - MER58A DNA MER1_type 0 224 1 605 119 10 0 chr4 62781668 62781769 -139546578 + (TCC)n Simple_repeat Simple_repeat 1 102 0 222 366 27 9 chr4 62782218 62782330 -139546017 - L2 LINE L2 0 3313 3200 341 328 239 11 chr4 62782962 62783334 -139545013 - L2 LINE L2 -1035 2279 1823 340 296 90 11 chr4 62783343 62783532 -139544815 + HAL1 LINE L1 9 212 -2295 584 230 115 5 chr4 62783974 62784190 -139544157 - MER63 DNA MER1_type -1 1060 821 2996 200 85 76 chr4 62784190 62785148 -139543199 + MER52A LTR ERV1 1 1041 -671 389 305 93 61 chr4 62785152 62785627 -139542720 + HAL1 LINE L1 1700 2189 -318 21 0 0 0 chr4 62785975 62785996 -139542351 + AT_rich Low_complexity Low_complexity 1 21 0 199 314 71 0 chr4 62787003 62787073 -139541274 - L3 LINE CR1 -1314 263 189 248 233 0 0 chr4 62787324 62787367 -139540980 - LTR33 LTR ERVL 0 521 479 351 113 0 0 chr4 62787396 62787449 -139540898 + (T)n Simple_repeat Simple_repeat 1 53 0 198 224 0 0 chr4 62788210 62788259 -139540088 + T-rich Low_complexity Low_complexity 1 49 0 239 350 43 29 chr4 62788453 62788593 -139539754 - LTR33 LTR ERVL -331 190 49 548 208 10 0 chr4 62788933 62789029 -139539318 + MER7A DNA MER2_type 1 95 -251 501 250 0 0 chr4 62789038 62789138 -139539209 + MER7A DNA MER2_type 238 337 0 32 75 0 0 chr4 62789150 62789217 -139539130 + AT_rich Low_complexity Low_complexity 1 67 0 35 63 0 0 chr4 62789490 62789553 -139538794 + AT_rich Low_complexity Low_complexity 1 63 0 1466 240 50 22 chr4 62790340 62790744 -139537603 + MLT1C LTR MaLR 53 467 0 430 308 82 43 chr4 62791026 62791354 -139536993 - L1MEc LINE L1 -4118 2278 1938 828 249 90 57 chr4 62792528 62792892 -139535455 + L1MC4 LINE L1 7322 7711 -331 2231 122 8 40 chr4 62792892 62793268 -139535079 - THE1B LTR MaLR 0 364 1 828 249 90 57 chr4 62793268 62793445 -139534902 + L1MC4 LINE L1 7711 7881 -161 201 217 22 0 chr4 62793451 62793504 -139534843 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 247 246 33 0 chr4 62793592 62793653 -139534694 - MLT1H1 LTR MaLR -412 143 81 646 317 41 32 chr4 62793755 62793976 -139534371 + MIR SINE MIR 19 241 -21 38 51 0 0 chr4 62794098 62794157 -139534190 + AT_rich Low_complexity Low_complexity 1 59 0 24 0 0 0 chr4 62794657 62794681 -139533666 + AT_rich Low_complexity Low_complexity 1 24 0 201 74 0 0 chr4 62796680 62796707 -139531640 + (GA)n Simple_repeat Simple_repeat 2 28 0 607 181 104 0 chr4 62796713 62796857 -139531490 + FAM SINE Alu 1 49 0 276 294 50 34 chr4 62797303 62797422 -139530925 - MLT1J LTR MaLR -286 225 105 243 0 0 0 chr4 62797751 62797778 -139530569 + (TG)n Simple_repeat Simple_repeat 2 28 0 2447 202 43 20 chr4 62799073 62800006 -139528341 - L1MB5 LINE L1 -318 5856 4901 22 0 0 0 chr4 62800607 62800629 -139527718 + AT_rich Low_complexity Low_complexity 1 22 0 182 326 191 42 chr4 62800822 62801037 -139527310 + L2 LINE L2 2905 3151 -162 747 228 81 5 chr4 62801056 62801267 -139527080 - L1MD3 LINE L1 -16 7979 7753 11502 75 12 1 chr4 62801368 62802917 -139525430 - L1P LINE L1 -873 5273 3708 4336 90 17 52 chr4 62802917 62804090 -139524257 + MER11A LTR ERVK 1 1266 0 13170 83 13 12 chr4 62804090 62805980 -139522367 - L1P LINE L1 -2433 3713 1822 1014 217 81 75 chr4 62805988 62806431 -139521916 - L1MC3 LINE L1 -594 7191 6746 350 366 0 39 chr4 62806441 62806594 -139521753 + L2 LINE L2 3167 3313 0 25 0 0 0 chr4 62807352 62807377 -139520970 + AT_rich Low_complexity Low_complexity 1 25 0 253 329 103 13 chr4 62808138 62808293 -139520054 + MIR SINE MIR 22 190 -72 1882 145 3 7 chr4 62808454 62808760 -139519587 - AluSg SINE Alu 0 305 1 440 322 184 30 chr4 62809607 62809939 -139518408 + L2 LINE L2 41 423 -2891 195 343 167 20 chr4 62809983 62810181 -139518166 + L2 LINE L2 1953 2179 -1135 2066 133 0 3 chr4 62810190 62810498 -139517849 - AluSp SINE Alu -6 307 1 1518 287 76 17 chr4 62810520 62811297 -139517050 + L2 LINE L2 2400 3231 -82 21 36 0 0 chr4 62811314 62811342 -139517005 + AT_rich Low_complexity Low_complexity 1 28 0 805 306 31 34 chr4 62811465 62811847 -139516500 - L1ME3A LINE L1 -115 6055 5675 1714 117 52 35 chr4 62812811 62813101 -139515246 + AluSx SINE Alu 5 299 -13 285 315 65 0 chr4 62813192 62813284 -139515063 - L2 LINE L2 -4 3309 3212 534 309 67 45 chr4 62813320 62813634 -139514713 - MLT1H LTR MaLR 0 549 229 26 30 0 0 chr4 62814837 62814870 -139513477 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr4 62815068 62815091 -139513256 + AT_rich Low_complexity Low_complexity 1 23 0 272 130 0 43 chr4 62815126 62815218 -139513129 + (TAA)n Simple_repeat Simple_repeat 1 88 0 229 222 25 25 chr4 62816030 62816041 -139512306 - L1MA10 LINE L1 -3 6331 6321 1837 269 68 31 chr4 62816041 62816941 -139511406 - L1ME1 LINE L1 -5 6161 5225 1361 283 41 36 chr4 62816976 62817574 -139510773 - L1ME1 LINE L1 -904 5242 4639 2205 86 21 0 chr4 62817574 62817865 -139510482 - AluY SINE Alu -14 297 1 1361 283 41 36 chr4 62817865 62817931 -139510416 - L1ME1 LINE L1 -1507 4639 4575 625 307 40 22 chr4 62818044 62818269 -139510078 + MIR SINE MIR 4 232 -30 34 24 0 0 chr4 62818338 62818379 -139509968 + AT_rich Low_complexity Low_complexity 1 41 0 467 238 6 60 chr4 62820207 62820375 -139507972 - MER52A LTR ERV1 0 1755 1597 2444 245 109 39 chr4 62820417 62821218 -139507129 - LTR28 LTR ERV1 -163 857 1 205 372 21 0 chr4 62821768 62821862 -139506485 - MIR SINE MIR -8 254 159 324 111 0 0 chr4 62821886 62821940 -139506407 + (CA)n Simple_repeat Simple_repeat 2 55 0 22 0 0 0 chr4 62822700 62822722 -139505625 + AT_rich Low_complexity Low_complexity 1 22 0 232 94 0 0 chr4 62822722 62822754 -139505593 + L1PA7 LINE L1 6021 6052 -102 276 30 0 0 chr4 62823121 62823154 -139505193 + (TG)n Simple_repeat Simple_repeat 2 34 0 22 35 0 0 chr4 62823786 62823815 -139504532 + AT_rich Low_complexity Low_complexity 1 29 0 315 291 35 0 chr4 62824354 62824440 -139503907 - L2 LINE L2 0 3313 3225 465 262 0 16 chr4 62824453 62824575 -139503772 - MLT1I LTR MaLR -13 396 277 375 325 7 33 chr4 62824875 62825026 -139503321 - MLT1I LTR MaLR -252 157 11 748 304 169 23 chr4 62825034 62825690 -139502657 - L2 LINE L2 -132 3181 2426 539 316 117 54 chr4 62825701 62826191 -139502156 + L2 LINE L2 2512 2970 -343 207 0 0 0 chr4 62826191 62826214 -139502133 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1546 202 0 14 chr4 62826216 62826513 -139501834 - AluJb SINE Alu -19 293 1 539 316 117 54 chr4 62826513 62826774 -139501573 + L2 LINE L2 2970 3313 0 326 381 9 0 chr4 62831029 62831134 -139497213 - L2 LINE L2 0 3313 3208 206 268 36 0 chr4 62831388 62831444 -139496903 - L2 LINE L2 -2 3270 3213 189 121 0 0 chr4 62831519 62831552 -139496795 + (A)n Simple_repeat Simple_repeat 1 33 0 257 389 41 9 chr4 62831728 62831949 -139496398 - L2 LINE L2 -536 2778 2551 249 294 0 0 chr4 62832691 62832759 -139495588 - L1MEc LINE L1 -5922 474 407 2920 296 64 45 chr4 62832906 62833235 -139495112 + L1MEc LINE L1 46 367 -6029 1799 179 37 0 chr4 62833235 62833559 -139494788 - MER1B DNA MER1_type 0 337 2 2920 296 64 45 chr4 62833559 62834946 -139493401 + L1MEc LINE L1 367 1794 -4602 221 245 0 0 chr4 62835062 62835111 -139493236 + GA-rich Low_complexity Low_complexity 4 52 0 396 0 0 0 chr4 62835923 62835967 -139492380 + (TA)n Simple_repeat Simple_repeat 1 44 0 2466 116 6 3 chr4 62836340 62836702 -139491645 + THE1B LTR MaLR 2 364 0 51 0 0 0 chr4 62836757 62836808 -139491539 + AT_rich Low_complexity Low_complexity 1 51 0 1184 237 52 36 chr4 62837421 62837789 -139490558 + MLT1A2 LTR MaLR 1 467 0 32 43 0 0 chr4 62837831 62837877 -139490470 + AT_rich Low_complexity Low_complexity 1 46 0 1072 207 55 60 chr4 62839192 62839605 -139488742 - MER39 LTR ERV1 -15 642 75 424 261 50 0 chr4 62839609 62839728 -139488619 - MER34 LTR ERV1 -410 132 8 25 0 0 0 chr4 62839754 62839779 -139488568 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 62840068 62840090 -139488257 + AT_rich Low_complexity Low_complexity 1 22 0 241 377 42 16 chr4 62840980 62841171 -139487176 - MIR SINE MIR -54 208 13 1549 188 0 29 chr4 62842388 62842696 -139485651 - AluJo SINE Alu -13 299 1 296 173 19 0 chr4 62842852 62842904 -139485443 - MER4B LTR ERV1 -18 592 540 269 294 15 0 chr4 62842909 62842977 -139485370 + L2 LINE L2 3244 3312 -1 22 0 0 0 chr4 62843285 62843307 -139485040 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 62844320 62844351 -139483996 + AT_rich Low_complexity Low_complexity 1 31 0 277 273 25 58 chr4 62845201 62845322 -139483025 - L2 LINE L2 -45 3268 3152 2437 207 16 26 chr4 62845475 62845967 -139482380 - ERVL LTR ERVL -3549 2215 1729 1643 148 11 11 chr4 62846397 62846704 -139481643 - AluSx SINE Alu 0 307 1 22 35 0 0 chr4 62847476 62847505 -139480842 + AT_rich Low_complexity Low_complexity 1 29 0 405 253 17 42 chr4 62848976 62849127 -139479220 - MLT2D LTR ERVL -193 221 76 282 288 50 0 chr4 62849197 62849277 -139479070 - L2 LINE L2 -16 3297 3214 229 167 17 17 chr4 62849679 62849739 -139478608 + (TA)n Simple_repeat Simple_repeat 2 61 0 29 0 0 0 chr4 62849892 62849921 -139478426 + AT_rich Low_complexity Low_complexity 1 29 0 1439 241 27 68 chr4 62849955 62850473 -139477874 - MLT1D LTR MaLR -3 502 6 322 242 15 0 chr4 62850773 62850839 -139477508 - MLT1I LTR MaLR -342 67 1 247 290 43 11 chr4 62851993 62852086 -139476261 + MER94 DNA DNA 19 114 -20 2243 112 3 3 chr4 62852103 62852416 -139475931 - AluSq SINE Alu 0 313 1 180 0 0 0 chr4 62853083 62853103 -139475244 + (AGTAG)n Simple_repeat Simple_repeat 5 24 0 303 93 0 0 chr4 62853627 62853670 -139474677 + (CA)n Simple_repeat Simple_repeat 2 44 0 533 262 16 0 chr4 62853854 62853999 -139474348 - MSTC LTR MaLR -215 150 1 195 69 0 0 chr4 62854018 62854047 -139474300 + (CAA)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr4 62854118 62854139 -139474208 + AT_rich Low_complexity Low_complexity 1 21 0 3464 172 5 5 chr4 62854231 62855049 -139473298 + L1MC/D LINE L1 4990 5808 -525 596 0 40 0 chr4 62855227 62855301 -139473046 + (TAAAA)n Simple_repeat Simple_repeat 4 80 0 359 236 22 0 chr4 62855346 62855435 -139472912 - LTR16B LTR ERVL -369 95 5 640 331 67 37 chr4 62855461 62856173 -139472174 - ERVL LTR ERVL -21 5389 4539 877 362 69 30 chr4 62856318 62856887 -139471460 - ERVL LTR ERVL -1207 4557 3937 1359 266 87 27 chr4 62856887 62857361 -139470986 - MLT1D LTR MaLR -3 502 1 877 362 69 30 chr4 62857361 62857703 -139470644 - ERVL LTR ERVL -1827 3937 3610 289 239 0 0 chr4 62857855 62857926 -139470421 - ERVL LTR ERVL -2809 2676 2606 935 316 58 54 chr4 62858027 62858584 -139469763 - ERVL LTR ERVL -2534 2462 1904 1916 118 49 3 chr4 62859120 62859408 -139468939 + AluSc SINE Alu 1 301 -8 285 390 7 7 chr4 62859424 62859565 -139468782 + L3 LINE CR1 1122 1262 -315 536 280 14 7 chr4 62860519 62860662 -139467685 + MIR SINE MIR 29 172 -90 324 314 14 50 chr4 62860667 62860807 -139467540 + MIR SINE MIR 128 262 0 181 271 21 0 chr4 62860975 62861023 -139467324 - MIR SINE MIR -68 140 92 27 49 0 0 chr4 62861465 62861506 -139466841 + AT_rich Low_complexity Low_complexity 1 41 0 384 22 0 0 chr4 62862838 62862883 -139465464 + (TG)n Simple_repeat Simple_repeat 2 46 0 1392 279 76 0 chr4 62864698 62865067 -139463280 + MLT1F LTR MaLR 10 406 -136 200 224 0 79 chr4 62865351 62865408 -139462939 + T-rich Low_complexity Low_complexity 4 55 -18 6154 94 13 6 chr4 62865408 62867179 -139461168 - L1PA11 LINE L1 -8 6166 4381 200 224 0 79 chr4 62867179 62867197 -139461150 + T-rich Low_complexity Low_complexity 55 73 0 320 339 67 18 chr4 62867225 62867390 -139460957 + MIR SINE MIR 17 189 -73 556 316 126 19 chr4 62867470 62867884 -139460463 + LTR16B LTR ERVL 1 458 -6 194 0 39 0 chr4 62869961 62869987 -139458360 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 269 256 0 26 chr4 62870330 62870408 -139457939 + L1ME LINE L1 5590 5665 -456 299 279 90 27 chr4 62870519 62870630 -139457717 - L2 LINE L2 -1 3312 3195 190 316 176 0 chr4 62871281 62871417 -139456930 + MIR SINE MIR 103 262 0 2701 178 18 72 chr4 62873445 62873481 -139454866 - MLT2B3 LTR ERVL -8 546 510 279 54 0 0 chr4 62873481 62873518 -139454829 + (CA)n Simple_repeat Simple_repeat 2 38 0 2701 178 18 72 chr4 62873518 62874054 -139454293 - MLT2B3 LTR ERVL -44 510 5 382 35 18 18 chr4 62874249 62874306 -139454041 + (TTTC)n Simple_repeat Simple_repeat 4 60 0 193 242 16 65 chr4 62875081 62875143 -139453204 - L2 LINE L2 0 3272 3214 455 32 0 16 chr4 62875685 62875747 -139452600 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 21 36 0 0 chr4 62876402 62876430 -139451917 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr4 62876520 62876559 -139451788 + AT_rich Low_complexity Low_complexity 1 39 0 33 25 0 0 chr4 62876798 62876838 -139451509 + AT_rich Low_complexity Low_complexity 1 40 0 203 297 14 0 chr4 62876980 62877054 -139451293 - MIR SINE MIR -106 156 82 23 0 0 0 chr4 62878357 62878380 -139449967 + AT_rich Low_complexity Low_complexity 1 23 0 230 336 95 37 chr4 62879016 62879257 -139449090 + MIR SINE MIR 8 262 0 386 197 56 0 chr4 62879553 62879624 -139448723 - Tigger1 DNA MER2_type 0 2418 2344 2650 144 5 5 chr4 62879626 62880063 -139448284 - Tigger1 DNA MER2_type -185 2233 1797 939 324 26 75 chr4 62880075 62880692 -139447655 + L1PA16 LINE L1 788 1374 -6200 1543 297 15 9 chr4 62881168 62881707 -139446640 + L1PA16 LINE L1 2185 2726 -4855 571 258 148 16 chr4 62882385 62882695 -139445652 - L1ME4a LINE L1 -152 5969 5619 2049 138 3 0 chr4 62882695 62882993 -139445354 + AluSq SINE Alu 1 299 -14 3207 204 17 21 chr4 62882993 62883805 -139444542 - L1 LINE L1 -2408 3738 2930 22 35 0 0 chr4 62884530 62884559 -139443788 + AT_rich Low_complexity Low_complexity 1 29 0 43961 40 2 4 chr4 62884791 62890587 -139437760 + L1P1 LINE L1 1 5784 -371 1056 70 5 38 chr4 62890687 62890700 -139437647 + (GAAA)n Simple_repeat Simple_repeat 1 192 0 1056 70 5 38 chr4 62890700 62890886 -139437461 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 10735 234 57 19 chr4 62890945 62894113 -139434234 + L1PA16 LINE L1 3140 6515 -1089 2034 127 3 0 chr4 62894113 62894438 -139433909 + AluSx SINE Alu 1 326 0 10735 234 57 19 chr4 62894438 62895562 -139432785 + L1PA16 LINE L1 6515 7595 -9 2101 149 171 48 chr4 62895576 62895623 -139432724 - Tigger1 DNA MER2_type -614 1804 1764 1783 163 4 0 chr4 62895623 62895920 -139432427 + AluSx SINE Alu 4 301 0 2101 149 171 48 chr4 62895920 62896327 -139432020 - Tigger1 DNA MER2_type -654 1764 1293 8925 52 2 3 chr4 62896327 62897465 -139430882 - L1P LINE L1 -1195 4951 3816 4256 148 3 6 chr4 62897465 62898152 -139430195 - Tigger1 DNA MER2_type -1126 1292 608 1395 199 4 18 chr4 62898157 62898434 -139429913 - AluJb SINE Alu -22 290 18 3538 167 31 2 chr4 62898434 62899038 -139429309 - Tigger1 DNA MER2_type -1796 622 1 21 0 0 0 chr4 62900039 62900060 -139428287 + AT_rich Low_complexity Low_complexity 1 21 0 3057 130 30 6 chr4 62900078 62900577 -139427770 + MER9 LTR ERVK 1 511 0 900 187 10 67 chr4 62901380 62901589 -139426758 + MER20 DNA MER1_type 23 219 0 23 0 0 0 chr4 62902341 62902364 -139425983 + AT_rich Low_complexity Low_complexity 1 23 0 187 364 48 53 chr4 62902387 62902574 -139425773 + L2 LINE L2 2721 2906 -408 263 264 127 38 chr4 62903123 62903563 -139424784 - L1MC4 LINE L1 -189 7853 7273 503 202 8 16 chr4 62903747 62903871 -139424476 - L1PB4 LINE L1 -2 6154 6032 344 333 35 14 chr4 62904858 62904999 -139423348 - MIR SINE MIR -105 157 14 191 340 10 29 chr4 62905748 62905851 -139422496 + MIR SINE MIR 52 152 -110 187 109 0 43 chr4 62906060 62906106 -139422241 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 23 122 0 0 chr4 62906244 62906400 -139421947 + AT_rich Low_complexity Low_complexity 1 156 0 213 304 98 27 chr4 62906547 62906659 -139421688 - MIR SINE MIR -2 260 141 393 109 0 0 chr4 62906994 62907049 -139421298 + Alu SINE Alu 240 294 -6 764 273 77 13 chr4 62907101 62907406 -139420941 + MLT1E1 LTR MaLR 304 654 0 829 183 26 0 chr4 62907575 62907728 -139420619 + LTR26 LTR ERV1 1 157 -446 3904 180 145 85 chr4 62907730 62908895 -139419452 + MER52A LTR ERV1 1 1324 -431 1346 144 193 33 chr4 62908925 62908986 -139419361 + LTR26 LTR ERV1 291 341 -262 1799 147 47 0 chr4 62908986 62909265 -139419082 + AluSg SINE Alu 1 292 -18 288 0 0 0 chr4 62909265 62909297 -139419050 + (TA)n Simple_repeat Simple_repeat 2 33 0 1346 144 193 33 chr4 62909297 62909504 -139418843 + LTR26 LTR ERV1 340 603 0 500 297 21 47 chr4 62909585 62909777 -139418570 - L1MCb LINE L1 -5653 392 206 2568 177 41 51 chr4 62909914 62910542 -139417805 - L1MC3 LINE L1 -9 7776 7155 2631 223 75 13 chr4 62910542 62911474 -139416873 + L1MB7 LINE L1 5108 6174 -10 306 365 86 31 chr4 62911536 62911758 -139416589 - MIR SINE MIR -15 247 14 1703 125 73 0 chr4 62911811 62912059 -139416288 + AluSq SINE Alu 1 266 -47 34 42 0 0 chr4 62912401 62912449 -139415898 + AT_rich Low_complexity Low_complexity 1 48 0 1067 15 0 0 chr4 62912545 62912675 -139415672 - L1PA3 LINE L1 -3710 2436 2307 24072 36 5 0 chr4 62912679 62916395 -139411952 + L1PA3 LINE L1 2436 6155 0 183 80 0 0 chr4 62916857 62916882 -139411465 + (TATG)n Simple_repeat Simple_repeat 4 28 0 1477 216 166 97 chr4 62916945 62917395 -139410952 + MLT1E1 LTR MaLR 3 508 -146 1348 185 0 71 chr4 62917395 62917896 -139410451 - AluJb SINE Alu 0 478 1 1477 216 166 97 chr4 62917896 62918052 -139410295 + MLT1E1 LTR MaLR 508 652 -2 2122 93 11 0 chr4 62920425 62920734 -139407613 - AluSc SINE Alu 0 312 1 1068 37 0 0 chr4 62920941 62921077 -139407270 - L1P LINE L1 -824 5322 5187 5318 30 5 0 chr4 62921077 62921735 -139406612 + L1PA4 LINE L1 5507 6171 0 499 333 104 32 chr4 62921867 62922338 -139406009 + LTR33 LTR ERVL 10 514 -7 23 0 0 0 chr4 62922813 62922836 -139405511 + AT_rich Low_complexity Low_complexity 1 23 0 715 263 113 45 chr4 62925477 62925903 -139402444 + HsTC2 DNA Tc2 1270 1900 0 458 277 85 11 chr4 62925948 62926125 -139402222 - LTR16A LTR ERVL -2 448 259 266 314 31 57 chr4 62926256 62926415 -139401932 - ERVL LTR ERVL -866 4898 4744 270 209 23 0 chr4 62926427 62926556 -139401791 + (TA)n Simple_repeat Simple_repeat 2 133 0 910 346 48 26 chr4 62926983 62927493 -139400854 - ERVL LTR ERVL -3143 1853 1258 1472 213 7 0 chr4 62927493 62927798 -139400549 - AluJb SINE Alu -5 307 1 910 346 48 26 chr4 62927798 62928015 -139400332 - ERVL LTR ERVL -3738 1258 1047 681 319 53 41 chr4 62928553 62928895 -139399452 - ERVL LTR ERVL -4574 422 77 453 314 65 62 chr4 62928984 62929293 -139399054 - LTR16A LTR ERVL -20 430 121 1263 46 0 0 chr4 62929941 62930094 -139398253 - AluY SINE Alu -2 309 157 233 306 14 14 chr4 62930170 62930242 -139398105 - L2 LINE L2 -5 3308 3237 305 231 0 11 chr4 62930919 62931010 -139397337 + CT-rich Low_complexity Low_complexity 2 91 0 265 361 24 12 chr4 62931239 62931408 -139396939 + L2 LINE L2 733 903 -2411 24 67 0 0 chr4 62931742 62931787 -139396560 + AT_rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr4 62931879 62931903 -139396444 + AT_rich Low_complexity Low_complexity 1 24 0 561 238 109 30 chr4 62932529 62932731 -139395616 - MER20 DNA MER1_type -1 218 1 276 130 0 0 chr4 62932969 62933015 -139395332 + (TCCCC)n Simple_repeat Simple_repeat 4 49 0 420 306 84 68 chr4 62933599 62934022 -139394325 - MLT1H1 LTR MaLR -6 549 130 2151 46 0 0 chr4 62934249 62934512 -139393835 + L1PA3 LINE L1 5893 6155 0 251 62 125 94 chr4 62938032 62938096 -139390251 - MLT2B3 LTR ERVL 0 520 455 2404 218 18 15 chr4 62938122 62938656 -139389691 - MLT2B3 LTR ERVL -35 508 1 531 345 47 13 chr4 62938703 62938938 -139389409 + MIR SINE MIR 1 243 -19 294 95 0 0 chr4 62939391 62939433 -139388914 + (TA)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr4 62939485 62939507 -139388840 + AT_rich Low_complexity Low_complexity 1 22 0 241 406 33 17 chr4 62942914 62943094 -139385253 + L2 LINE L2 3104 3286 -27 21 0 0 0 chr4 62944890 62944911 -139383436 + AT_rich Low_complexity Low_complexity 1 21 0 448 288 79 45 chr4 62945177 62945980 -139382367 - HAL1 LINE L1 -90 2417 1541 193 33 67 67 chr4 62946004 62946064 -139382283 + (TTAAA)n Simple_repeat Simple_repeat 1 60 0 320 302 75 50 chr4 62946090 62946249 -139382098 - HAL1 LINE L1 -1019 1488 1326 44 20 0 0 chr4 62946279 62946330 -139382017 + AT_rich Low_complexity Low_complexity 1 51 0 476 326 83 43 chr4 62946597 62946971 -139381376 - HAL1 LINE L1 -1610 897 509 397 340 110 39 chr4 62947136 62947353 -139380994 + L2 LINE L2 2978 3225 -88 2401 74 0 3 chr4 62947353 62947664 -139380683 + AluY SINE Alu 1 310 -1 397 340 110 39 chr4 62947664 62947755 -139380592 + L2 LINE L2 3225 3308 -5 254 342 9 36 chr4 62947863 62947974 -139380373 - L2 LINE L2 0 3313 3206 203 403 3 9 chr4 62948176 62948352 -139379995 - L2 LINE L2 -391 2922 2750 180 204 23 23 chr4 62948353 62948397 -139379950 + L2 LINE L2 2394 2437 -877 * 266 221 116 53 chr4 62948395 62948490 -139379857 + L2 LINE L2 3213 3313 0 312 324 188 24 chr4 62948646 62948859 -139379488 + MIR SINE MIR 3 250 -12 26 0 0 0 chr4 62950515 62950541 -139377806 + AT_rich Low_complexity Low_complexity 1 26 0 1425 203 4 0 chr4 62950611 62950867 -139377480 - AluJb SINE Alu -22 290 34 2086 105 0 0 chr4 62951119 62951395 -139376952 - AluSq SINE Alu -35 278 3 21 36 0 0 chr4 62951647 62951675 -139376672 + AT_rich Low_complexity Low_complexity 1 28 0 467 207 0 0 chr4 62951933 62952015 -139376332 - AluJ/FLAM SINE Alu -225 87 6 5483 231 18 4 chr4 62952018 62953336 -139375011 + L1 LINE L1 3239 4574 -1572 326 129 40 139 chr4 62953360 62953461 -139374886 - L1PA13 LINE L1 -1 6162 6072 * 16855 212 43 19 chr4 62953439 62957113 -139371234 - L1PA13 LINE L1 -38 6776 2678 7854 65 10 3 chr4 62957113 62958113 -139370234 - LTR13 LTR ERVK 0 1007 1 16855 212 43 19 chr4 62958113 62960856 -139367491 - L1PA13 LINE L1 -4136 2678 2 4230 157 24 41 chr4 62960863 62961710 -139366637 + L1PB4 LINE L1 5340 6300 0 361 302 0 119 chr4 62963097 62963256 -139365091 - MIR SINE MIR -92 170 31 223 344 52 19 chr4 62963342 62963496 -139364851 + MIR SINE MIR 53 211 -51 205 207 17 0 chr4 62963555 62963613 -139364734 + (TA)n Simple_repeat Simple_repeat 1 59 0 4441 212 26 10 chr4 62963785 62964998 -139363349 - L1M3 LINE L1 -612 5556 4330 1252 170 52 125 chr4 62964998 62965399 -139362948 + MER83C LTR ERV1 1 372 -1 1386 226 5 71 chr4 62965411 62965850 -139362497 - L1M3 LINE L1 -1823 4323 3914 2803 155 12 14 chr4 62965900 62966416 -139361931 + L1MB1 LINE L1 5604 6118 -50 1954 98 29 44 chr4 62966427 62966743 -139361604 + AluY SINE Alu 1 311 0 207 100 0 0 chr4 62966818 62966848 -139361499 + (A)n Simple_repeat Simple_repeat 1 30 0 25 31 0 0 chr4 62969184 62969216 -139359131 + AT_rich Low_complexity Low_complexity 1 32 0 212 308 26 8 chr4 62969313 62969430 -139358917 + CT-rich Low_complexity Low_complexity 3 121 0 1964 130 31 3 chr4 62969702 62969994 -139358353 + AluSx SINE Alu 1 300 -12 221 258 65 0 chr4 62970984 62971046 -139357301 - MIR SINE MIR -94 168 103 23 33 0 0 chr4 62971722 62971752 -139356595 + AT_rich Low_complexity Low_complexity 1 30 0 325 217 0 0 chr4 62972234 62972294 -139356053 - MIR SINE MIR -108 154 95 24 0 0 0 chr4 62972373 62972397 -139355950 + AT_rich Low_complexity Low_complexity 1 24 0 2973 273 65 55 chr4 62972935 62973092 -139355255 - L1MC4 LINE L1 -4 8038 7884 1337 285 53 28 chr4 62973092 62973597 -139354750 - LTR40a LTR ERVL 0 519 2 2973 273 65 55 chr4 62973597 62975002 -139353345 - L1MC4 LINE L1 -158 7884 6460 390 42 0 0 chr4 62975655 62975703 -139352644 + (CA)n Simple_repeat Simple_repeat 2 49 0 794 233 106 22 chr4 62976468 62976858 -139351489 - HERVL40 LTR ERVL -1850 3680 3228 510 260 8 8 chr4 62976914 62977037 -139351310 - HERVL40 LTR ERVL -2455 3075 2953 434 298 36 141 chr4 62980001 62980468 -139347879 - L2 LINE L2 -9 3263 2846 2298 94 0 3 chr4 62980516 62980824 -139347523 - AluY SINE Alu -4 307 1 252 59 0 0 chr4 62981260 62981294 -139347053 + (TC)n Simple_repeat Simple_repeat 1 34 0 242 241 17 0 chr4 62981388 62981446 -139346901 - MLT1G LTR MaLR -334 256 198 290 302 114 39 chr4 62981973 62982281 -139346066 + L1MC4 LINE L1 6827 7157 -885 286 331 31 0 chr4 62982448 62982575 -139345772 + L1MC4 LINE L1 7255 7385 -657 338 287 21 61 chr4 62982595 62982792 -139345555 + L1MCc LINE L1 33 567 -5855 1632 188 18 75 chr4 62982858 62983258 -139345089 + MLT1B LTR MaLR 1 377 -13 228 385 0 0 chr4 62983262 62983358 -139344989 + L1MCc LINE L1 840 935 -6006 676 271 59 26 chr4 62983785 62984091 -139344256 + L1MCc LINE L1 1117 1432 -4991 1213 266 109 45 chr4 62984132 62985393 -139342954 + L1MCc LINE L1 1418 2924 -4198 438 136 148 12 chr4 62985427 62985508 -139342839 + L1M4 LINE L1 5562 5653 -521 1045 266 44 63 chr4 62985614 62985823 -139342524 + LTR52 LTR ERVL 1 199 -222 240 35 0 0 chr4 62985823 62985852 -139342495 + (CA)n Simple_repeat Simple_repeat 2 30 0 1045 266 44 63 chr4 62985852 62986071 -139342276 + LTR52 LTR ERVL 199 421 0 2114 215 118 76 chr4 62986074 62986853 -139341494 + L1MD3 LINE L1 6289 7034 -948 351 44 0 0 chr4 62986853 62986898 -139341449 + (TG)n Simple_repeat Simple_repeat 2 46 0 207 0 0 0 chr4 62986898 62986921 -139341426 + (GA)n Simple_repeat Simple_repeat 2 24 0 396 161 115 0 chr4 62986925 62987012 -139341335 + MLT1F1 LTR MaLR 38 134 -433 2114 215 118 76 chr4 62987012 62987542 -139340805 + L1MD3 LINE L1 7036 7970 -12 233 225 14 28 chr4 62987543 62987614 -139340733 - MER47A DNA MER2_type -3 363 294 928 225 97 78 chr4 62987918 62988360 -139339987 - MLT1C LTR MaLR 0 467 1 277 258 93 69 chr4 62988385 62988676 -139339671 + L1MC4 LINE L1 7622 7919 -123 2240 75 3 3 chr4 62988765 62989059 -139339288 - AluY SINE Alu -17 294 1 24 0 0 0 chr4 62989088 62989112 -139339235 + AT_rich Low_complexity Low_complexity 1 24 0 7311 182 45 11 chr4 62989199 62990583 -139337764 - Tigger2 DNA MER2_type -2 2716 1286 7161 189 16 12 chr4 62990578 62992099 -139336248 - Tigger2 DNA MER2_type -1388 1330 1 * 290 353 20 60 chr4 62993382 62993631 -139334716 + LTR16A LTR ERVL 212 450 0 613 269 40 31 chr4 62994272 62994495 -139333852 + L1ME LINE L1 51 275 -6121 2499 261 82 50 chr4 62994497 62995931 -139332416 + L1ME LINE L1 3937 5416 -799 11733 227 45 20 chr4 62995938 62997051 -139331296 + L1MA4A LINE L1 572 1655 -5350 306 185 0 0 chr4 62997051 62997105 -139331242 + Alu SINE Alu 243 296 -4 11733 227 45 20 chr4 62997105 63001523 -139326824 + L1MA4A LINE L1 1655 6300 -705 1580 175 92 21 chr4 63001543 63001881 -139326466 - MSTA LTR MaLR -63 365 4 2394 147 14 16 chr4 63001881 63002318 -139326029 + L1MA4A LINE L1 6566 7001 -4 1566 251 28 24 chr4 63002323 63002785 -139325562 + L1ME LINE L1 5394 5857 -378 220 309 0 12 chr4 63002987 63003068 -139325279 + (TTCA)n Simple_repeat Simple_repeat 4 83 0 232 133 22 0 chr4 63003071 63003116 -139325231 - MLT2B3 LTR ERVL 0 515 470 232 113 75 0 chr4 63003116 63003194 -139325153 + (TA)n Simple_repeat Simple_repeat 1 83 0 975 267 77 79 chr4 63003196 63003716 -139324631 - MLT2B3 LTR ERVL -35 519 1 9375 246 35 42 chr4 63003751 63006046 -139322301 - ERVL-B3 LTR ERVL -26 5738 3426 226 114 0 0 chr4 63006046 63006081 -139322266 + MADE1 DNA Mariner 46 80 0 9375 246 35 42 chr4 63006081 63006271 -139322076 - ERVL-B3 LTR ERVL -2338 3426 3236 1592 227 56 17 chr4 63056405 63056814 -139271533 + MER76 LTR ERV 43 467 -221 317 264 40 64 chr4 63056866 63056991 -139271356 + MER76 LTR ERV 563 684 -4 1518 189 0 28 chr4 63057145 63057436 -139270911 + AluJo SINE Alu 22 304 -8 1146 143 0 0 chr4 63057655 63057816 -139270531 + AluSg/x SINE Alu 136 296 -16 2277 61 0 0 chr4 63057818 63058097 -139270250 + AluY SINE Alu 1 279 -32 412 275 66 33 chr4 63058350 63058623 -139269724 + L1MC4 LINE L1 7720 8001 -41 337 365 52 5 chr4 63058940 63059132 -139269215 + MIR SINE MIR 30 230 -32 1680 166 0 57 chr4 63059171 63059485 -139268862 - AluSq SINE Alu -17 296 1 1752 167 38 30 chr4 63059746 63060118 -139268229 - THE1C LTR MaLR 0 375 1 220 299 0 0 chr4 63061300 63061397 -139266950 + (TA)n Simple_repeat Simple_repeat 2 98 0 2063 63 41 66 chr4 63061415 63061734 -139266613 - AluY SINE Alu 0 311 1 1609 166 23 99 chr4 63061734 63062119 -139266228 - MER47A DNA MER2_type -5 361 6 293 327 64 6 chr4 63062230 63062386 -139265961 - MIR SINE MIR -48 214 50 1863 231 69 16 chr4 63062866 63063485 -139264862 + MER50 LTR ERV1 12 732 -2 25 40 0 20 chr4 63063748 63063779 -139264568 + AT_rich Low_complexity Low_complexity 1 32 -17 2154 144 0 16 chr4 63063779 63064155 -139264192 - L1PB1 LINE L1 0 6151 5782 25 40 0 20 chr4 63064155 63064173 -139264174 + AT_rich Low_complexity Low_complexity 32 49 0 291 170 0 0 chr4 63064200 63064253 -139264094 + L1 LINE L1 5192 5244 -902 198 71 0 0 chr4 63064713 63064741 -139263606 + (CAT)n Simple_repeat Simple_repeat 3 30 0 2139 101 11 0 chr4 63066538 63066824 -139261523 - AluSx SINE Alu -8 304 16 1538 155 39 11 chr4 63066884 63067168 -139261179 - AluSx SINE Alu -20 292 1 21 36 0 0 chr4 63067231 63067259 -139261088 + AT_rich Low_complexity Low_complexity 1 28 0 266 277 62 9 chr4 63067280 63067392 -139260955 - MIR SINE MIR -70 192 75 2072 91 28 0 chr4 63067892 63068178 -139260169 - AluY SINE Alu -17 294 1 235 202 25 34 chr4 63069147 63069266 -139259081 + (TATAA)n Simple_repeat Simple_repeat 4 121 0 21 36 0 0 chr4 63069406 63069434 -139258913 + AT_rich Low_complexity Low_complexity 1 28 0 2117 154 38 35 chr4 63069682 63070077 -139258270 - MER61B LTR ERV1 -29 396 1 240 261 79 42 chr4 63070175 63070416 -139257931 - L1MEc LINE L1 -4165 2231 1982 369 0 0 0 chr4 63071162 63071203 -139257144 + (TA)n Simple_repeat Simple_repeat 2 42 0 1673 191 0 3 chr4 63071721 63072014 -139256333 - AluJo SINE Alu -11 301 10 209 125 0 25 chr4 63072753 63072793 -139255554 + (TAA)n Simple_repeat Simple_repeat 2 40 0 572 275 57 47 chr4 63074665 63074876 -139253471 + MER58A DNA MER1_type 1 213 -11 2361 127 19 3 chr4 63077120 63077489 -139250858 + THE1C LTR MaLR 1 375 0 1362 213 23 68 chr4 63078760 63078925 -139249422 + MSTD LTR MaLR 4 175 -221 20335 36 4 7 chr4 63078925 63082210 -139246137 + L1PA3 LINE L1 2872 6155 0 1362 213 23 68 chr4 63082210 63082443 -139245904 + MSTD LTR MaLR 175 384 -12 463 121 60 12 chr4 63082543 63082626 -139245721 + MSTD LTR MaLR 342 428 0 267 285 94 38 chr4 63082809 63083076 -139245271 + L1M4 LINE L1 4400 4681 -1465 33 85 0 0 chr4 63083558 63083640 -139244707 + AT_rich Low_complexity Low_complexity 1 82 0 4046 27 0 0 chr4 63084648 63085126 -139243221 - L1PA3 LINE L1 0 6155 5678 3004 26 0 0 chr4 63085126 63085477 -139242870 + L1PA3 LINE L1 5304 5654 -501 1885 144 0 0 chr4 63086425 63086744 -139241603 - AluSx SINE Alu 0 319 1 2472 108 14 6 chr4 63087566 63087927 -139240420 + THE1B LTR MaLR 1 364 0 22 35 0 0 chr4 63089692 63089721 -139238626 + AT_rich Low_complexity Low_complexity 1 29 0 186 93 0 56 chr4 63089977 63090031 -139238316 + (TA)n Simple_repeat Simple_repeat 1 51 0 32 0 0 0 chr4 63090297 63090329 -139238018 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 63090572 63090593 -139237754 + AT_rich Low_complexity Low_complexity 1 21 0 280 143 26 26 chr4 63090747 63090824 -139237523 + T-rich Low_complexity Low_complexity 2 78 0 231 36 0 0 chr4 63091127 63091155 -139237192 + (TG)n Simple_repeat Simple_repeat 2 29 0 264 145 105 0 chr4 63091196 63091272 -139237075 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 268 303 92 18 chr4 63091413 63091641 -139236706 - L1M4 LINE L1 -1161 4985 4741 1891 109 3 82 chr4 63091677 63092007 -139236340 - AluSg1 SINE Alu -5 304 1 304 281 162 34 chr4 63092173 63092408 -139235939 - L1M4 LINE L1 -1542 4604 4340 39343 77 10 2 chr4 63092493 63098423 -139229924 + L1PA6 LINE L1 1 5977 -177 522 326 8 38 chr4 63098523 63098787 -139229560 + L1MEc LINE L1 1598 1853 -4543 229 290 135 25 chr4 63099055 63099300 -139229047 + L1MEc LINE L1 1844 2115 -4281 1837 114 8 0 chr4 63099385 63099649 -139228698 + AluSq SINE Alu 1 266 -47 2268 171 30 13 chr4 63099658 63100127 -139228220 + L1MA4 LINE L1 5819 6295 -5 440 238 122 0 chr4 63100141 63100288 -139228059 + L1MB7 LINE L1 4985 5149 -997 18555 29 0 0 chr4 63100294 63102526 -139225821 - L1PA2 LINE L1 -1754 4392 2161 8325 30 0 0 chr4 63102527 63104292 -139224055 + L1PA2 LINE L1 4381 6150 -5 3798 224 28 4 chr4 63104336 63105320 -139223027 + L1MB7 LINE L1 5171 6177 -7 22 0 0 0 chr4 63105320 63105342 -139223005 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 63105396 63105418 -139222929 + AT_rich Low_complexity Low_complexity 1 22 0 368 288 22 36 chr4 63107731 63107870 -139220477 + MIR SINE MIR 77 213 -49 266 319 42 17 chr4 63108829 63108948 -139219399 - L2 LINE L2 -2 3311 3190 1387 287 31 31 chr4 63109284 63109730 -139218617 - LTR16C LTR ERVL -2 489 44 408 278 61 61 chr4 63109956 63110168 -139218179 + L2 LINE L2 3102 3313 0 248 54 54 18 chr4 63110941 63110997 -139217350 + (TA)n Simple_repeat Simple_repeat 2 59 0 330 311 100 43 chr4 63111401 63111681 -139216666 + L2 LINE L2 2297 2592 -722 23 0 0 0 chr4 63112349 63112372 -139215975 + AT_rich Low_complexity Low_complexity 1 23 0 2246 57 0 0 chr4 63112373 63112704 -139215643 + AluY SINE Alu 1 331 0 22 35 0 0 chr4 63112760 63112789 -139215558 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr4 63113786 63113811 -139214536 + AT_rich Low_complexity Low_complexity 1 25 0 1399 183 84 0 chr4 63114580 63114843 -139213504 + AluJb SINE Alu 6 290 -22 21 0 0 0 chr4 63115395 63115416 -139212931 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr4 63115591 63115633 -139212714 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr4 63116032 63116054 -139212293 + AT_rich Low_complexity Low_complexity 1 22 0 336 365 30 6 chr4 63116101 63116268 -139212079 - MIR SINE MIR -72 190 20 594 266 130 10 chr4 63116638 63116939 -139211408 - L1MEc LINE L1 -4421 1975 1639 2232 279 74 43 chr4 63116970 63117972 -139210375 - L1MEc LINE L1 -5235 1161 129 575 261 76 22 chr4 63118145 63118329 -139210018 - MER58C DNA MER1_type -15 200 7 1005 248 68 19 chr4 63118538 63118861 -139209486 - MER2 DNA MER2_type -2 342 4 25 75 0 0 chr4 63119326 63119379 -139208968 + AT_rich Low_complexity Low_complexity 1 53 0 333 306 102 0 chr4 63120191 63120299 -139208048 - L2 LINE L2 0 3272 3154 298 332 45 60 chr4 63120904 63121103 -139207244 + L2 LINE L2 226 421 -2893 247 321 46 53 chr4 63121196 63121327 -139207020 - MIR SINE MIR -20 242 113 444 293 7 35 chr4 63121339 63121515 -139206832 + MER5A DNA MER1_type 7 186 -3 29 28 0 0 chr4 63121581 63121617 -139206730 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr4 63121906 63121940 -139206407 + AT_rich Low_complexity Low_complexity 1 34 0 2508 54 0 19 chr4 63122012 63122329 -139206018 - AluY SINE Alu 0 311 1 500 268 96 76 chr4 63124609 63124911 -139203436 - MLT1I LTR MaLR -2 407 100 256 314 116 0 chr4 63125120 63125206 -139203141 - L2 LINE L2 -463 2851 2756 186 43 0 0 chr4 63125340 63125363 -139202984 + (TG)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr4 63125874 63125896 -139202451 + AT_rich Low_complexity Low_complexity 1 22 0 198 321 62 0 chr4 63126222 63126303 -139202044 + L3 LINE CR1 1205 1290 -287 261 298 21 0 chr4 63126377 63126471 -139201876 - MLT1H LTR MaLR 0 549 454 369 295 105 19 chr4 63126581 63126810 -139201537 - MLT1H LTR MaLR -242 307 3 29 0 0 0 chr4 63128277 63128306 -139200041 + AT_rich Low_complexity Low_complexity 1 29 0 2854 149 45 21 chr4 63128428 63129010 -139199337 - L1MA9 LINE L1 -2 6310 5715 1216 259 47 8 chr4 63129016 63129376 -139198971 - L1M3e LINE L1 -6357 673 22 21 0 0 0 chr4 63130011 63130032 -139198315 + AT_rich Low_complexity Low_complexity 1 21 0 2005 94 6 66 chr4 63130128 63130447 -139197900 + AluY SINE Alu 1 300 -11 259 24 0 48 chr4 63130695 63130737 -139197610 + (TA)n Simple_repeat Simple_repeat 1 40 0 2241 67 0 29 chr4 63131331 63131645 -139196702 - AluY SINE Alu -6 305 1 281 175 0 12 chr4 63132115 63132195 -139196152 + GA-rich Low_complexity Low_complexity 2 80 0 709 338 21 7 chr4 63134861 63135142 -139193205 - LTR16B LTR ERVL -147 317 33 755 189 8 0 chr4 63135585 63135717 -139192630 + AluJo SINE Alu 2 134 -178 697 131 7 7 chr4 63135882 63136027 -139192320 + (GGAA)n Simple_repeat Simple_repeat 1 145 0 1668 247 100 0 chr4 63136603 63137041 -139191306 + MLT2B1 LTR ERVL 3 492 -28 312 70 0 0 chr4 63137041 63137084 -139191263 + (CA)n Simple_repeat Simple_repeat 2 44 0 1668 247 100 0 chr4 63137084 63137114 -139191233 + MLT2B1 LTR ERVL 492 518 -2 314 310 109 31 chr4 63138097 63138326 -139190021 - L2 LINE L2 -47 3266 3020 309 345 110 19 chr4 63138402 63138611 -139189736 - L2 LINE L2 -458 2856 2629 316 303 41 16 chr4 63139447 63139569 -139188778 - L2 LINE L2 -1 3312 3188 320 380 18 6 chr4 63139958 63140129 -139188218 - L2 LINE L2 -510 2804 2632 4925 145 23 9 chr4 63140378 63141232 -139187115 - L1PA16 LINE L1 -9 6157 5292 461 296 118 31 chr4 63141861 63142182 -139186165 + L1ME4a LINE L1 5564 5912 -209 198 0 0 0 chr4 63143279 63143301 -139185046 + (T)n Simple_repeat Simple_repeat 1 22 0 742 278 18 24 chr4 63143669 63144000 -139184347 - L1MCa LINE L1 -5140 1424 1096 385 237 0 0 chr4 63144048 63144122 -139184225 - MER77 LTR ERV1 -28 577 504 1426 196 111 68 chr4 63144122 63144542 -139183805 - MLT2B1 LTR ERVL 0 414 11 1467 251 62 78 chr4 63144552 63145053 -139183294 - MER77 LTR ERV1 -97 508 16 622 235 0 13 chr4 63145072 63145225 -139183122 - L1MCa LINE L1 -4950 1095 945 241 303 0 15 chr4 63145362 63145428 -139182919 - L1MCa LINE L1 -6357 207 143 228 35 0 0 chr4 63146620 63146649 -139181698 + (TG)n Simple_repeat Simple_repeat 2 30 0 379 266 40 58 chr4 63146767 63146940 -139181407 - MER63A DNA MER1_type -1 209 40 276 30 0 0 chr4 63147371 63147404 -139180943 + (TAAAA)n Simple_repeat Simple_repeat 5 37 0 21 0 0 0 chr4 63148370 63148391 -139179956 + AT_rich Low_complexity Low_complexity 1 21 0 695 74 37 28 chr4 63148503 63148611 -139179736 + HSMAR1 DNA Mariner 1 109 -1178 450 193 0 0 chr4 63148632 63148715 -139179632 - L1PA12 LINE L1 -1376 6208 6126 7853 119 65 16 chr4 63148735 63149948 -139178399 + HSMAR1 DNA Mariner 14 1286 -1 1098 117 0 12 chr4 63150019 63150190 -139178157 - L1PA13 LINE L1 -4 6159 5991 16384 217 31 14 chr4 63150298 63152649 -139175698 - L1PA12 LINE L1 -1455 6129 3820 1187 196 56 63 chr4 63152649 63153027 -139175320 + THE1C LTR MaLR 1 375 0 8443 173 6 36 chr4 63153030 63154656 -139173691 + THE1C-int LTR MaLR 4 1580 0 1603 170 75 28 chr4 63154656 63155014 -139173333 + THE1C LTR MaLR 1 375 0 16384 217 31 14 chr4 63155014 63157895 -139170452 - L1PA12 LINE L1 -3764 3820 7 1770 137 4 11 chr4 63158433 63158710 -139169637 - AluSx SINE Alu -7 305 31 208 339 0 0 chr4 63160206 63160262 -139168085 - L2 LINE L2 -1 3271 3216 28 0 0 0 chr4 63161682 63161710 -139166637 + AT_rich Low_complexity Low_complexity 1 28 0 2241 174 15 37 chr4 63161907 63162368 -139165979 - MSTB2 LTR MaLR -2 455 5 560 245 43 0 chr4 63162460 63162599 -139165748 - FRAM SINE Alu -25 151 7 885 155 0 26 chr4 63165042 63165197 -139163150 + MSTA LTR MaLR 278 428 0 1780 175 3 0 chr4 63165796 63166088 -139162259 + AluSx SINE Alu 7 299 -13 910 240 115 35 chr4 63166957 63167225 -139161122 + MLT1A1 LTR MaLR 1 305 -60 1833 153 4 0 chr4 63167225 63167550 -139160797 - AluSq SINE Alu 0 326 1 910 240 115 35 chr4 63167550 63167617 -139160730 + MLT1A1 LTR MaLR 305 365 0 351 44 0 0 chr4 63167694 63167739 -139160608 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr4 63168086 63168114 -139160233 + AT_rich Low_complexity Low_complexity 1 28 0 3515 175 34 39 chr4 63168592 63169381 -139158966 - LTR1 LTR ERV1 0 785 1 16990 165 26 14 chr4 63169385 63172367 -139155980 - HUERS-P2 LTR ERV1 -4 3084 1 3309 184 44 46 chr4 63172367 63173186 -139155161 - LTR1 LTR ERV1 0 785 12 6725 163 30 45 chr4 63173328 63174825 -139153522 + L1PA14 LINE L1 3989 5492 -669 241 78 0 157 chr4 63174825 63174876 -139153471 - MADE1 DNA Mariner -3 77 35 6725 163 30 45 chr4 63174876 63175537 -139152810 + L1PA14 LINE L1 5492 6161 0 37 0 0 0 chr4 63175540 63175577 -139152770 + AT_rich Low_complexity Low_complexity 1 37 0 229 197 28 14 chr4 63175781 63175852 -139152495 + (TA)n Simple_repeat Simple_repeat 2 73 0 24 0 0 0 chr4 63175882 63175906 -139152441 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr4 63175974 63176003 -139152344 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr4 63176330 63176366 -139151981 + AT_rich Low_complexity Low_complexity 1 36 0 1607 232 20 22 chr4 63176437 63176616 -139151731 + L1MB7 LINE L1 5710 5888 -296 1530 192 3 17 chr4 63176616 63176907 -139151440 + AluJo SINE Alu 3 289 -23 1607 232 20 22 chr4 63176907 63177180 -139151167 + L1MB7 LINE L1 5888 6161 -23 394 48 16 16 chr4 63177347 63177409 -139150938 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 355 369 43 5 chr4 63179463 63179650 -139148697 - MIR SINE MIR -26 236 43 443 212 9 35 chr4 63180217 63180330 -139148017 - LTR53 LTR ERVL -213 306 197 660 246 53 98 chr4 63180336 63180603 -139147744 - L1MDa LINE L1 -3512 3132 2855 2336 46 0 0 chr4 63180603 63180903 -139147444 - AluY SINE Alu 0 300 1 660 246 53 98 chr4 63180903 63180985 -139147362 - L1MDa LINE L1 -3789 2855 2771 754 236 104 94 chr4 63180985 63181485 -139146862 + MLT1D LTR MaLR 1 505 0 660 246 53 98 chr4 63181485 63181709 -139146638 - L1MDa LINE L1 -3873 2771 2576 304 111 56 0 chr4 63181777 63181867 -139146480 + (TA)n Simple_repeat Simple_repeat 2 96 0 32 26 0 0 chr4 63181867 63181906 -139146441 + AT_rich Low_complexity Low_complexity 1 39 0 306 287 27 47 chr4 63181906 63182056 -139146291 - L1MDa LINE L1 -4131 2515 2369 9088 244 52 46 chr4 63182153 63187374 -139140973 + L1MB1 LINE L1 94 5133 -859 303 49 0 0 chr4 63187374 63187415 -139140932 + (CA)n Simple_repeat Simple_repeat 2 42 0 9088 244 52 46 chr4 63187415 63188276 -139140071 + L1MB1 LINE L1 5133 5987 -5 622 234 44 0 chr4 63188289 63188426 -139139921 + MLT1C LTR MaLR 40 182 -285 40 0 0 0 chr4 63188428 63188468 -139139879 + AT_rich Low_complexity Low_complexity 1 40 0 824 239 73 9 chr4 63188486 63188704 -139139643 + MLT1C LTR MaLR 187 418 -49 326 307 42 52 chr4 63188719 63188931 -139139416 - L1MDa LINE L1 -4265 2381 2172 504 328 74 39 chr4 63188938 63189451 -139138896 - L1MDa LINE L1 -5998 544 14 1284 273 100 30 chr4 63189480 63190242 -139138105 - L1MC5 LINE L1 -35 7926 7112 1634 198 82 11 chr4 63190245 63190613 -139137734 + MSTD LTR MaLR 1 394 -2 303 285 56 14 chr4 63190613 63190757 -139137590 - L1MC5 LINE L1 -850 7111 6962 257 291 23 0 chr4 63190864 63190950 -139137397 - L1MC4 LINE L1 -1065 6977 6890 1592 246 94 53 chr4 63191214 63191682 -139136665 - MER70B LTR ERVL 0 578 92 574 159 21 175 chr4 63191682 63191781 -139136566 - MER70B LTR ERVL -418 160 102 7400 38 0 0 chr4 63191781 63192928 -139135419 - L1PA3 LINE L1 0 6155 5007 574 159 21 175 chr4 63192928 63193017 -139135330 - MER70B LTR ERVL -476 102 1 1785 191 30 61 chr4 63193022 63193451 -139134896 - MER67D LTR ERV1 -98 416 1 189 0 0 0 chr4 63193453 63193474 -139134873 + (CA)n Simple_repeat Simple_repeat 2 22 0 234 247 0 94 chr4 63193769 63193854 -139134493 - L1MC4a LINE L1 -1455 6353 6277 634 167 33 47 chr4 63193863 63194013 -139134334 + L1MB1 LINE L1 6018 6165 -3 296 257 0 0 chr4 63195913 63195987 -139132360 - LTR41 LTR ERVL 0 773 700 266 250 0 0 chr4 63196081 63196145 -139132202 - MER52C LTR ERV1 -1192 86 23 2393 185 10 4 chr4 63196145 63196625 -139131722 + L1MB3 LINE L1 5701 6183 0 442 250 0 0 chr4 63197004 63197120 -139131227 + MER53 DNA DNA 74 189 0 231 250 12 12 chr4 63198343 63198423 -139129924 + (TA)n Simple_repeat Simple_repeat 2 81 0 24 67 0 0 chr4 63198540 63198585 -139129762 + AT_rich Low_complexity Low_complexity 1 45 0 374 328 0 70 chr4 63198720 63198765 -139129582 + L2 LINE L2 2234 2281 -1033 895 216 10 10 chr4 63198765 63198973 -139129374 + MER3 DNA MER1_type 1 208 -1 374 328 0 70 chr4 63198973 63199098 -139129249 + L2 LINE L2 2281 2392 -922 285 259 99 0 chr4 63199269 63199350 -139128997 + L2 LINE L2 3225 3313 0 212 278 102 70 chr4 63199430 63199617 -139128730 + MIR SINE MIR 45 237 -25 184 273 82 36 chr4 63199673 63199783 -139128564 + MIR3 SINE MIR 87 201 -7 22 0 0 0 chr4 63202226 63202248 -139126099 + AT_rich Low_complexity Low_complexity 1 22 0 1516 278 50 81 chr4 63202439 63202799 -139125548 - L1MEc LINE L1 -2100 4544 4174 2421 61 3 0 chr4 63202799 63203092 -139125255 - AluY SINE Alu -17 294 1 1516 278 50 81 chr4 63203092 63204159 -139124188 - L1MEc LINE L1 -2470 4174 3161 1259 168 31 31 chr4 63204177 63204433 -139123914 - AluSx SINE Alu -15 297 42 22 35 0 0 chr4 63204796 63204825 -139123522 + AT_rich Low_complexity Low_complexity 1 29 0 1168 279 15 18 chr4 63204997 63205395 -139122952 - L1MEc LINE L1 -4671 1975 1579 * 11260 129 15 28 chr4 63205390 63207355 -139120992 - L1P3 LINE L1 -4486 1975 8 916 244 55 0 chr4 63207354 63207629 -139120718 - L1M4 LINE L1 -5202 1340 1051 * 704 208 12 35 chr4 63207632 63207805 -139120542 - L1M4 LINE L1 -6371 171 3 1221 103 0 17 chr4 63207971 63208146 -139120201 - AluSg/x SINE Alu -15 297 126 207 0 0 0 chr4 63209025 63209048 -139119299 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 301 245 25 128 chr4 63209221 63209425 -139118922 - L1MEc LINE L1 -5181 1644 1462 1481 332 65 70 chr4 63209507 63210995 -139117352 + L2 LINE L2 1812 3298 -15 25 31 0 0 chr4 63211812 63211844 -139116503 + AT_rich Low_complexity Low_complexity 1 32 0 3389 191 71 8 chr4 63213846 63214594 -139113753 + L1PA13 LINE L1 3913 4707 -1439 * 4963 135 24 14 chr4 63214563 63215520 -139112827 + L1PA13 LINE L1 5099 6074 -89 32 0 0 0 chr4 63215828 63215860 -139112487 + AT_rich Low_complexity Low_complexity 1 32 0 4876 176 25 17 chr4 63216387 63218258 -139110089 - L1MA6 LINE L1 -106 6194 4315 12981 124 10 7 chr4 63218258 63220212 -139108135 + L1PA5 LINE L1 1 1961 -4185 15910 71 5 1 chr4 63220212 63223128 -139105219 + L1PA5 LINE L1 3231 6152 -2 521 164 164 13 chr4 63223131 63223217 -139105130 - L1MA6 LINE L1 -1820 4326 4254 364 62 31 0 chr4 63223217 63223281 -139105066 + (TA)n Simple_repeat Simple_repeat 2 67 0 521 164 164 13 chr4 63223281 63223346 -139105001 - L1MA6 LINE L1 -1892 4254 4152 * 5746 196 48 31 chr4 63223343 63224771 -139103576 - L1 LINE L1 -1737 4409 2957 397 62 31 0 chr4 63226153 63226218 -139102129 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 419 155 39 0 chr4 63227188 63227291 -139101056 + (TA)n Simple_repeat Simple_repeat 2 108 0 26 50 0 0 chr4 63227340 63227380 -139100967 + AT_rich Low_complexity Low_complexity 1 40 0 1762 189 83 13 chr4 63228420 63228816 -139099531 + MSTA LTR MaLR 1 424 -4 1174 172 44 0 chr4 63228821 63229048 -139099299 + L1MB1 LINE L1 5892 6128 -40 330 269 90 58 chr4 63229352 63229575 -139098772 - L1M4 LINE L1 -1730 4416 4187 441 289 54 33 chr4 63229576 63229818 -139098529 - L1M4 LINE L1 -2022 4124 3878 225 0 0 0 chr4 63229934 63229959 -139098388 + (TG)n Simple_repeat Simple_repeat 2 26 0 23 54 0 0 chr4 63230679 63230716 -139097631 + AT_rich Low_complexity Low_complexity 1 37 0 309 252 159 37 chr4 63230788 63230895 -139097452 + L2 LINE L2 3194 3313 0 1922 180 26 3 chr4 63231246 63231585 -139096762 + THE1B LTR MaLR 18 364 0 727 94 57 0 chr4 63231777 63231881 -139096466 + MSTC LTR MaLR 1 110 -318 1845 244 47 63 chr4 63231881 63232310 -139096037 + LTR26 LTR ERV1 1 419 -184 1108 144 27 0 chr4 63232310 63232498 -139095849 + L1PB2 LINE L1 5952 6144 -7 1845 244 47 63 chr4 63232498 63232667 -139095680 + LTR26 LTR ERV1 419 589 -14 1561 189 12 48 chr4 63232681 63233015 -139095332 + MSTC LTR MaLR 107 428 0 24 0 0 0 chr4 63234085 63234109 -139094238 + AT_rich Low_complexity Low_complexity 1 24 0 414 57 0 0 chr4 63234299 63234352 -139093995 + (CA)n Simple_repeat Simple_repeat 2 54 0 450 0 0 0 chr4 63234619 63234669 -139093678 + (CA)n Simple_repeat Simple_repeat 2 51 0 203 222 0 22 chr4 63235472 63235517 -139092830 + MIR3 SINE MIR 163 206 -2 472 288 36 27 chr4 63235542 63235764 -139092583 + L1ME1 LINE L1 44 267 -6129 * 2067 272 114 25 chr4 63235746 63236835 -139091512 + L1ME1 LINE L1 5014 6187 -48 229 234 32 21 chr4 63236965 63237059 -139091288 + (TA)n Simple_repeat Simple_repeat 2 96 0 276 256 50 33 chr4 63237190 63237311 -139091036 + MLT2F LTR ERVL 20 142 -521 826 316 56 6 chr4 63237348 63237690 -139090657 + MLT2F LTR ERVL 239 597 -66 221 367 95 19 chr4 63239372 63239582 -139088765 + L2 LINE L2 2581 2806 -508 402 309 168 30 chr4 63240449 63240818 -139087529 - MLT1J2 LTR MaLR -15 435 12 1693 118 0 0 chr4 63240868 63241146 -139087201 - L1PA7 LINE L1 0 6154 5885 25 51 0 0 chr4 63241526 63241565 -139086782 + AT_rich Low_complexity Low_complexity 1 39 0 458 60 0 15 chr4 63241956 63242023 -139086324 + (TC)n Simple_repeat Simple_repeat 1 66 0 300 133 0 0 chr4 63242024 63242084 -139086263 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 2712 98 64 5 chr4 63242169 63242550 -139085797 + MLT2A1 LTR ERVL 1 411 -33 198 0 0 0 chr4 63242550 63242572 -139085775 + (TA)n Simple_repeat Simple_repeat 2 23 0 2712 98 64 5 chr4 63242572 63242609 -139085738 + MLT2A1 LTR ERVL 411 444 0 322 258 151 19 chr4 63243084 63243243 -139085104 + L1MC/D LINE L1 5380 5559 -2249 21 95 0 0 chr4 63243385 63243448 -139084899 + AT_rich Low_complexity Low_complexity 1 63 0 34 0 0 0 chr4 63244427 63244461 -139083886 + AT_rich Low_complexity Low_complexity 1 34 0 182 62 31 0 chr4 63244510 63244542 -139083805 + (GA)n Simple_repeat Simple_repeat 2 34 0 3664 50 9 0 chr4 63245908 63246363 -139081984 - L1PA4 LINE L1 -1 6154 5696 667 237 26 7 chr4 63297232 63297384 -139030963 + MLT1A2 LTR MaLR 1 155 -219 609 312 6 0 chr4 63298774 63298944 -139029403 + MLT1F LTR MaLR 1 171 -371 196 308 0 0 chr4 63299248 63299300 -139029047 - MIR SINE MIR -6 256 205 288 114 14 29 chr4 63299418 63299488 -139028859 + (GA)n Simple_repeat Simple_repeat 1 69 0 202 200 43 0 chr4 63300834 63300904 -139027443 + (TA)n Simple_repeat Simple_repeat 2 74 0 180 200 0 0 chr4 63301467 63301512 -139026835 + A-rich Low_complexity Low_complexity 3 47 0 289 268 145 13 chr4 63301934 63302169 -139026178 - L1ME4a LINE L1 -3 6118 5853 23 68 0 0 chr4 63302178 63302222 -139026125 + AT_rich Low_complexity Low_complexity 1 44 0 7604 28 0 0 chr4 63302682 63303739 -139024608 - L1PA3 LINE L1 -3 6152 5099 568 256 6 83 chr4 63303951 63304131 -139024216 + MIR SINE MIR 4 169 -93 1702 294 89 34 chr4 63305724 63305785 -139022562 - L2 LINE L2 -95 3218 3162 2090 120 0 0 chr4 63305785 63306121 -139022226 + AluSq SINE Alu 3 338 0 1702 294 89 34 chr4 63306121 63307061 -139021286 - L2 LINE L2 -151 3162 2150 199 361 60 8 chr4 63307044 63307177 -139021170 - L2 LINE L2 -1356 1958 1819 * 16171 44 1 1 chr4 63307321 63309362 -139018985 - L1P LINE L1 -2387 3759 1718 4117 31 0 0 chr4 63309361 63309851 -139018496 + L1P LINE L1 3885 4374 -1772 * 738 272 147 59 chr4 63311258 63311361 -139016986 - L2 LINE L2 -8 3305 3212 1398 213 12 3 chr4 63311361 63311680 -139016667 + L1MA6 LINE L1 5978 6299 -1 738 272 147 59 chr4 63311680 63312188 -139016159 - L2 LINE L2 -101 3212 2671 5055 210 23 6 chr4 63312576 63313225 -139015122 - L1PB4 LINE L1 -2 6211 5575 192 40 0 0 chr4 63313225 63313250 -139015097 + (TG)n Simple_repeat Simple_repeat 2 26 0 5055 210 23 6 chr4 63313250 63315098 -139013249 - L1PB4 LINE L1 -638 5575 3557 644 117 0 0 chr4 63315098 63315192 -139013155 - AluSg/x SINE Alu -8 304 211 791 225 38 78 chr4 63315198 63315709 -139012638 - L1PB4 LINE L1 -2642 3561 690 335 311 72 12 chr4 63315759 63315926 -139012421 + MLT1J LTR MaLR 294 470 -41 252 288 0 0 chr4 63317431 63317490 -139010857 - MIR SINE MIR 0 262 204 674 292 68 17 chr4 63317512 63317748 -139010599 + MIR SINE MIR 15 262 0 195 287 85 32 chr4 63317800 63317894 -139010453 - MIR SINE MIR -111 151 53 7763 40 2 1 chr4 63318678 63320411 -139007936 - L1PA3 LINE L1 0 6155 4424 695 152 0 0 chr4 63320653 63320765 -139007582 + HY1 scRNA scRNA 1 112 0 1154 255 95 52 chr4 63321368 63321851 -139006496 + MLT1D LTR MaLR 2 505 0 28 29 0 0 chr4 63322084 63322119 -139006228 + AT_rich Low_complexity Low_complexity 1 35 0 297 0 0 0 chr4 63324713 63324746 -139003601 + (TG)n Simple_repeat Simple_repeat 1 33 0 303 136 0 0 chr4 63324748 63324807 -139003540 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 982 276 71 15 chr4 63325753 63326241 -139002106 - L1ME2 LINE L1 -334 6224 5700 404 291 58 23 chr4 63326331 63326503 -139001844 + MLT1H LTR MaLR 130 307 -242 373 278 15 66 chr4 63326719 63326917 -139001430 - L1ME2 LINE L1 -830 5710 5523 1994 113 3 50 chr4 63327025 63327344 -139001003 - AluSx SINE Alu 0 312 9 312 268 52 77 chr4 63327550 63327744 -139000603 - L1ME2 LINE L1 -4677 2044 1856 24 32 0 0 chr4 63327807 63327838 -139000509 + AT_rich Low_complexity Low_complexity 1 31 0 514 272 51 29 chr4 63327863 63328139 -139000208 - L1ME2 LINE L1 -4997 1543 1262 28092 88 10 11 chr4 63328631 63332345 -138996002 - HERVL-A1 LTR ERVL -1826 3828 119 2076 102 39 0 chr4 63332345 63332630 -138995717 + AluSq SINE Alu 2 297 -16 28092 88 10 11 chr4 63332630 63332748 -138995599 - HERVL-A1 LTR ERVL -5535 119 2 340 96 0 9 chr4 63332750 63332809 -138995538 - MLT2A1 LTR ERVL -1 443 395 3020 83 18 0 chr4 63332863 63333259 -138995088 - MLT2A1 LTR ERVL -41 403 1 211 400 94 0 chr4 63333679 63333839 -138994508 - MIR SINE MIR -36 226 52 24 32 0 0 chr4 63333914 63333945 -138994402 + AT_rich Low_complexity Low_complexity 1 31 0 29 47 0 0 chr4 63334074 63334117 -138994230 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 63334762 63334783 -138993564 + AT_rich Low_complexity Low_complexity 1 21 0 475 276 13 20 chr4 63335441 63335593 -138992754 + MLT1J2 LTR MaLR 54 204 -246 946 265 59 25 chr4 63335973 63335993 -138992354 - L1ME1 LINE L1 -5 6161 6143 1553 223 57 37 chr4 63335993 63336451 -138991896 - MLT1C LTR MaLR 0 467 1 946 265 59 25 chr4 63336451 63336838 -138991509 - L1ME1 LINE L1 -23 6143 5740 912 253 5 15 chr4 63336838 63337040 -138991307 + LTR40a LTR ERVL 294 493 -26 232 321 7 57 chr4 63337171 63337311 -138991036 + L2 LINE L2 2255 2387 -927 1884 153 7 0 chr4 63337844 63338144 -138990203 + AluSx SINE Alu 1 302 -10 22862 108 6 13 chr4 63338282 63342676 -138985671 + L1PA7 LINE L1 1795 6154 0 364 116 29 0 chr4 63342796 63342865 -138985482 + L1MA5 LINE L1 6230 6300 0 379 328 100 9 chr4 63343453 63343682 -138984665 - MLT1J1 LTR MaLR -152 294 45 287 295 94 13 chr4 63343900 63344049 -138984298 + L2 LINE L2 2688 2848 -466 23 0 0 0 chr4 63344805 63344828 -138983519 + AT_rich Low_complexity Low_complexity 1 23 0 533 203 59 43 chr4 63344840 63345027 -138983320 - L1MA9 LINE L1 -39 6273 6084 1860 119 6 64 chr4 63345228 63345540 -138982807 + AluSx SINE Alu 1 294 -18 7797 160 0 31 chr4 63345906 63347380 -138980967 - L1P3 LINE L1 -3380 3081 1656 11209 109 16 29 chr4 63347399 63349128 -138979219 - L1P3 LINE L1 -4755 1706 1 300 299 108 62 chr4 63349550 63349744 -138978603 - L1ME3A LINE L1 0 6170 5968 723 309 74 39 chr4 63349788 63350274 -138978073 - L1ME3A LINE L1 -208 5962 5460 351 357 71 0 chr4 63350354 63350609 -138977738 - L1ME3A LINE L1 -747 5399 5127 622 335 45 12 chr4 63350684 63351084 -138977263 - L1ME3A LINE L1 -2384 3762 3350 207 397 88 0 chr4 63351271 63351407 -138976940 + L2 LINE L2 2592 2739 -575 1931 137 50 34 chr4 63351671 63352029 -138976318 + THE1B LTR MaLR 1 364 0 2140 104 0 7 chr4 63352128 63352435 -138975912 + AluSc SINE Alu 2 306 -3 267 279 40 125 chr4 63353159 63353373 -138974974 + L2 LINE L2 2717 2897 -375 1850 105 0 0 chr4 63353373 63353639 -138974708 - L1PA7 LINE L1 -4 6150 5885 267 279 40 125 chr4 63353639 63353770 -138974577 + L2 LINE L2 2897 3038 -234 192 282 169 0 chr4 63353872 63353943 -138974404 + L2 LINE L2 3190 3272 0 272 339 39 16 chr4 63354693 63354820 -138973527 + L2 LINE L2 2227 2356 -958 1412 191 47 34 chr4 63355053 63355435 -138972912 - L1PA6 LINE L1 -293 5861 5479 695 286 41 39 chr4 63355431 63355794 -138972553 + L1MA9 LINE L1 5919 6282 -30 * 479 372 11 5 chr4 63355809 63355997 -138972350 + L2 LINE L2 2454 2642 -672 24 77 0 0 chr4 63356048 63356100 -138972247 + AT_rich Low_complexity Low_complexity 1 52 0 259 290 73 11 chr4 63356554 63356672 -138971675 + MIR3 SINE MIR 47 165 -43 1440 241 22 3 chr4 63356863 63357187 -138971160 + MLT1C LTR MaLR 138 467 0 1810 199 11 34 chr4 63357201 63357413 -138970934 + MER7A DNA MER2_type 4 204 -2834 2671 63 38 8 chr4 63357413 63357780 -138970567 + L1PA7 LINE L1 5777 6154 0 1810 199 11 34 chr4 63357780 63357919 -138970428 + MER7A DNA MER2_type 204 345 -1 306 314 0 20 chr4 63360991 63361093 -138967254 - L2 LINE L2 0 3313 3214 615 12 36 0 chr4 63361796 63361880 -138966467 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 301 304 61 43 chr4 63361886 63362001 -138966346 - L2 LINE L2 -9 3263 3147 227 296 31 20 chr4 63362224 63362322 -138966025 + Charlie8 DNA MER1_type 73 171 -2246 678 310 111 60 chr4 63363015 63363863 -138964484 - L1MEd LINE L1 -4701 1430 637 1641 142 139 27 chr4 63365090 63365427 -138962920 + THE1C LTR MaLR 1 375 0 13103 146 16 114 chr4 63367043 63367574 -138960773 - L1P LINE L1 -3330 2816 2235 312 48 0 0 chr4 63367574 63367616 -138960731 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 14841 36 1 1 chr4 63367616 63370196 -138958151 - L1PA3 LINE L1 -10 6145 3565 13103 146 16 114 chr4 63370196 63372771 -138955576 - L1P LINE L1 -3909 2237 13 17146 102 8 2 chr4 63372772 63376112 -138952235 + L1PA7 LINE L1 2812 6152 -2 195 42 0 0 chr4 63377657 63377681 -138950666 + (A)n Simple_repeat Simple_repeat 1 24 0 290 331 68 7 chr4 63377958 63378106 -138950241 + MIR SINE MIR 103 259 -3 216 231 96 0 chr4 63378220 63378272 -138950075 - MIR SINE MIR -68 194 138 11297 48 0 0 chr4 63378284 63379707 -138948640 - L1P LINE L1 -3190 2956 1534 7254 42 0 8 chr4 63379707 63381099 -138947248 + L1PA4 LINE L1 4769 6153 -2 898 251 103 26 chr4 63381908 63382247 -138946100 + MLT1A1 LTR MaLR 1 365 0 388 260 159 77 chr4 63382296 63382635 -138945712 - Charlie8 DNA MER1_type -2020 397 31 494 330 53 67 chr4 63382822 63383067 -138945280 + L2 LINE L2 2585 2819 -494 1600 183 10 16 chr4 63383067 63383379 -138944968 - AluJb SINE Alu -2 310 1 494 330 53 67 chr4 63383379 63383627 -138944720 + L2 LINE L2 2819 3069 -244 1337 189 13 29 chr4 63384084 63384396 -138943951 + L1MA3 LINE L1 5998 6304 -1 327 310 26 26 chr4 63384419 63384535 -138943812 + L2 LINE L2 2681 2796 -518 250 305 182 20 chr4 63384529 63384732 -138943615 + L2 LINE L2 2988 3223 -90 * 530 191 9 0 chr4 63384784 63384889 -138943458 - L1MA4 LINE L1 -120 6180 6075 347 0 23 0 chr4 63384893 63384936 -138943411 + (TA)n Simple_repeat Simple_repeat 1 44 0 2152 142 7 0 chr4 63385082 63385392 -138942955 - AluSx SINE Alu 0 312 1 6543 223 26 14 chr4 63385523 63387262 -138941085 + L1MA6 LINE L1 14 2119 -5446 14071 185 24 36 chr4 63387265 63388102 -138940245 + L1MA6 LINE L1 2900 3746 -3973 1812 167 0 28 chr4 63388102 63388420 -138939927 + AluSx SINE Alu 1 309 -3 14071 185 24 36 chr4 63388420 63389140 -138939207 + L1MA6 LINE L1 3746 4474 -3245 471 167 12 12 chr4 63389140 63389224 -138939123 + AluS SINE Alu 1 84 -229 14071 185 24 36 chr4 63389224 63390166 -138938181 + L1MA6 LINE L1 4474 5427 -2292 1649 142 113 29 chr4 63390166 63390339 -138938008 + THE1C LTR MaLR 3 160 -215 228 35 0 0 chr4 63390339 63390368 -138937979 + (TC)n Simple_repeat Simple_repeat 1 29 0 1649 142 113 29 chr4 63390368 63390538 -138937809 + THE1C LTR MaLR 160 375 0 8471 149 31 40 chr4 63390540 63391035 -138937312 + THE1C-int LTR MaLR 3 501 -1079 1869 127 0 31 chr4 63391035 63391326 -138937021 + AluSx SINE Alu 11 292 -20 8471 149 31 40 chr4 63391326 63392423 -138935924 + THE1C-int LTR MaLR 501 1580 0 1315 159 52 132 chr4 63392423 63392831 -138935516 + THE1C LTR MaLR 1 375 0 14071 185 24 36 chr4 63392831 63395089 -138933258 + L1MA6 LINE L1 5426 7712 -7 346 316 98 48 chr4 63395274 63395632 -138932715 - MLT1I LTR MaLR -2 407 32 889 54 0 0 chr4 63395664 63395775 -138932572 + AluY SINE Alu 199 309 -2 312 276 68 65 chr4 63395975 63396254 -138932093 - MER90 LTR ERV1 -64 511 232 23 0 0 0 chr4 63396415 63396438 -138931909 + AT_rich Low_complexity Low_complexity 1 23 0 369 0 0 0 chr4 63397081 63397122 -138931225 + (CA)n Simple_repeat Simple_repeat 1 41 0 26 30 0 0 chr4 63397183 63397216 -138931131 + AT_rich Low_complexity Low_complexity 1 33 0 1129 233 66 62 chr4 63397635 63398090 -138930257 + MLT1D LTR MaLR 21 477 -28 21 57 0 0 chr4 63398319 63398354 -138929993 + AT_rich Low_complexity Low_complexity 1 35 0 256 374 110 12 chr4 63398638 63398884 -138929463 - L2 LINE L2 -871 2443 2174 243 327 0 0 chr4 63398967 63399077 -138929270 + A-rich Low_complexity Low_complexity 1 110 0 479 352 109 4 chr4 63400281 63400586 -138927761 + L2 LINE L2 2665 2999 -314 294 278 10 116 chr4 63400614 63400812 -138927535 + L2 LINE L2 3127 3303 -10 368 338 68 8 chr4 63401978 63402212 -138926135 + L1M4 LINE L1 2925 3172 -2974 273 289 10 0 chr4 63402827 63402924 -138925423 - L1ME1 LINE L1 -45 6121 6024 568 135 10 0 chr4 63402926 63403022 -138925325 + L1MA3 LINE L1 6208 6304 -1 25 0 0 0 chr4 63405481 63405506 -138922841 + AT_rich Low_complexity Low_complexity 1 25 0 331 348 0 29 chr4 63405630 63405837 -138922510 + L1ME1 LINE L1 225 425 -5998 194 0 122 0 chr4 63405849 63405890 -138922457 + (CAAA)n Simple_repeat Simple_repeat 4 49 0 1214 209 84 129 chr4 63406363 63406898 -138921449 - MLT2B1 LTR ERVL -7 513 3 1921 221 18 61 chr4 63406952 63407496 -138920851 + L1MD3 LINE L1 7474 7994 -1 273 331 8 0 chr4 63407539 63407660 -138920687 + L1ME1 LINE L1 4127 4248 -2693 393 311 0 25 chr4 63407664 63407783 -138920564 + L2 LINE L2 3180 3295 -18 2695 273 72 55 chr4 63407814 63409285 -138919062 + L1ME1 LINE L1 4267 5762 -1179 1755 269 51 18 chr4 63409768 63410693 -138917654 + L1ME1 LINE L1 5765 6722 -239 317 206 41 27 chr4 63410758 63410810 -138917537 + (TA)n Simple_repeat Simple_repeat 2 52 -97 2089 82 0 62 chr4 63410810 63411115 -138917232 + AluY SINE Alu 1 286 -25 317 206 41 27 chr4 63411115 63411208 -138917139 + (TA)n Simple_repeat Simple_repeat 52 149 0 579 237 58 0 chr4 63411250 63411440 -138916907 - L1MD3 LINE L1 -8 7987 7787 180 0 83 28 chr4 63411551 63411587 -138916760 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 1872 248 68 56 chr4 63411785 63412910 -138915437 + L1MCc LINE L1 1311 2433 -4508 2389 70 0 3 chr4 63412929 63413231 -138915116 - AluY SINE Alu -8 303 3 37 0 0 0 chr4 63413244 63413281 -138915066 + AT_rich Low_complexity Low_complexity 1 37 0 288 343 94 63 chr4 63413422 63413676 -138914671 + L2 LINE L2 2992 3253 -19 441 289 40 33 chr4 63413827 63413979 -138914368 - MIR SINE MIR -57 205 53 230 344 138 6 chr4 63414354 63414514 -138913833 - MIR SINE MIR 0 262 82 207 268 61 49 chr4 63415237 63415319 -138913028 - MIR SINE MIR -73 189 107 267 152 0 0 chr4 63415323 63415369 -138912978 + (CA)n Simple_repeat Simple_repeat 2 47 0 391 156 0 0 chr4 63415493 63415557 -138912790 + MIR SINE MIR 175 238 -24 744 296 107 68 chr4 63415579 63415947 -138912400 - L2 LINE L2 -2 3311 2959 6890 56 4 15 chr4 63415947 63416968 -138911379 + L1PA5 LINE L1 5170 6154 0 744 296 107 68 chr4 63416968 63417363 -138910984 - L2 LINE L2 -354 2959 2508 426 244 71 60 chr4 63418637 63418805 -138909542 + MIR SINE MIR 93 262 0 192 77 0 0 chr4 63419512 63419538 -138908809 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2043 157 51 14 chr4 63420447 63420798 -138907549 - THE1B LTR MaLR 0 364 1 10740 122 3 5 chr4 63420799 63422381 -138905966 - THE1B-int LTR MaLR -1 1579 1 1840 176 48 14 chr4 63422381 63422733 -138905614 - THE1B LTR MaLR 0 364 1 773 264 48 51 chr4 63423167 63423520 -138904827 - MLT1E2 LTR MaLR 0 626 275 13940 214 24 19 chr4 63423520 63427836 -138900511 + L1PA15 LINE L1 1829 6164 -1 306 300 11 0 chr4 63427952 63428042 -138900305 - MLT1E2 LTR MaLR -504 150 60 33 0 0 0 chr4 63428159 63428192 -138900155 + AT_rich Low_complexity Low_complexity 1 33 0 2283 75 0 3 chr4 63428192 63428485 -138899862 - AluY SINE Alu -19 292 1 1012 219 42 0 chr4 63429831 63430046 -138898301 - MER58A DNA MER1_type 0 224 1 1646 201 43 30 chr4 63430182 63430540 -138897807 + MLT2D LTR ERVL 1 366 -48 333 0 0 0 chr4 63430540 63430577 -138897770 + (TG)n Simple_repeat Simple_repeat 2 38 0 1665 210 18 9 chr4 63430595 63430933 -138897414 - MER7A DNA MER2_type -7 339 1 385 42 0 0 chr4 63430972 63431020 -138897327 + MLT2D LTR ERVL 417 464 0 192 226 0 0 chr4 63431454 63431516 -138896831 + (TA)n Simple_repeat Simple_repeat 2 63 0 347 333 31 46 chr4 63432932 63433033 -138895314 - MIR SINE MIR -51 211 113 1001 240 29 78 chr4 63433033 63433417 -138894930 - MLT1A1 LTR MaLR 0 365 1 347 333 31 46 chr4 63433417 63433510 -138894837 - MIR SINE MIR -149 113 20 237 159 0 0 chr4 63433831 63433875 -138894472 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 22 0 0 0 chr4 63434012 63434034 -138894313 + AT_rich Low_complexity Low_complexity 1 22 0 220 187 0 0 chr4 63434262 63434309 -138894038 + MIR SINE MIR 98 145 -63 1610 173 3 3 chr4 63434383 63434686 -138893661 - AluSx SINE Alu 0 303 1 184 372 61 43 chr4 63435941 63436105 -138892242 - L2 LINE L2 -41 3231 3065 974 233 41 119 chr4 63437720 63438141 -138890206 - MLT1A2 LTR MaLR 0 374 2 1222 93 62 7 chr4 63438573 63438840 -138889507 + THE1A LTR MaLR 1 355 0 10585 114 25 5 chr4 63438840 63440389 -138887958 + THE1A-int LTR MaLR 1 1580 0 2241 118 47 0 chr4 63440389 63440728 -138887619 + THE1A LTR MaLR 1 355 0 26 50 0 0 chr4 63443107 63443147 -138885200 + AT_rich Low_complexity Low_complexity 1 40 0 23868 149 20 14 chr4 63443742 63444947 -138883400 + L1PA8A LINE L1 2 1198 -5248 180 0 0 0 chr4 63444947 63444967 -138883380 + (CCA)n Simple_repeat Simple_repeat 1 20 0 23868 149 20 14 chr4 63444967 63450101 -138878246 + L1PA8A LINE L1 1198 6445 -1 203 179 0 0 chr4 63450106 63450145 -138878202 + (TA)n Simple_repeat Simple_repeat 1 39 0 2072 167 3 0 chr4 63450146 63450511 -138877836 + L1PB1 LINE L1 5785 6150 -1 22 0 0 0 chr4 63450588 63450610 -138877737 + AT_rich Low_complexity Low_complexity 1 22 0 1764 146 23 16 chr4 63450687 63451128 -138877219 + L1PB4 LINE L1 5629 6148 -8 286 306 0 0 chr4 63451129 63451214 -138877133 + (TA)n Simple_repeat Simple_repeat 2 86 0 1048 302 57 23 chr4 63451214 63451727 -138876620 + Charlie7 DNA MER1_type 121 650 -1962 207 0 0 0 chr4 63452200 63452223 -138876124 + (A)n Simple_repeat Simple_repeat 1 23 0 202 282 148 4 chr4 63452674 63452837 -138875510 + MIR SINE MIR 2 252 -10 22 35 0 0 chr4 63453246 63453275 -138875072 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr4 63453635 63453677 -138874670 + AT_rich Low_complexity Low_complexity 1 42 0 245 219 0 55 chr4 63453901 63453974 -138874373 + MLT1J LTR MaLR 110 178 -333 250 357 26 55 chr4 63454596 63454868 -138873479 - ERVL LTR ERVL -4645 1119 856 24 53 0 0 chr4 63456311 63456349 -138871998 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr4 63456677 63456701 -138871646 + AT_rich Low_complexity Low_complexity 1 24 0 819 348 38 38 chr4 63457116 63457670 -138870677 - L2 LINE L2 -469 2845 2292 38 0 0 0 chr4 63458719 63458757 -138869590 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr4 63461529 63461561 -138866786 + AT_rich Low_complexity Low_complexity 1 32 0 227 238 0 79 chr4 63461622 63461685 -138866662 + MER5A DNA MER1_type 30 87 -102 411 21 0 0 chr4 63463907 63463955 -138864392 + (TG)n Simple_repeat Simple_repeat 2 49 0 21 0 0 0 chr4 63464870 63464891 -138863456 + AT_rich Low_complexity Low_complexity 1 21 0 1794 174 0 0 chr4 63464977 63465275 -138863072 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr4 63465500 63465521 -138862826 + AT_rich Low_complexity Low_complexity 1 21 0 2347 93 0 6 chr4 63465554 63465865 -138862482 - AluSq SINE Alu -4 309 1 767 288 102 21 chr4 63466377 63466749 -138861598 + LTR16B LTR ERVL 49 450 -14 1363 333 36 24 chr4 63467324 63468561 -138859786 + HERVL LTR ERVL 697 2012 -2984 637 277 40 76 chr4 63468759 63469088 -138859259 + HERVL LTR ERVL 2092 2408 -2588 795 273 71 8 chr4 63469144 63469438 -138858909 + L1MB7 LINE L1 5850 6164 -20 195 114 0 0 chr4 63469547 63469582 -138858765 + (CA)n Simple_repeat Simple_repeat 2 36 0 1616 237 59 7 chr4 63470026 63470465 -138857882 + L1MC2 LINE L1 5875 6336 -8 32 0 0 0 chr4 63470748 63470780 -138857567 + AT_rich Low_complexity Low_complexity 1 32 0 204 294 200 24 chr4 63471209 63471379 -138856968 - MIR SINE MIR 0 262 63 608 291 36 55 chr4 63471447 63471777 -138856570 - L1MA9 LINE L1 -38 6274 5951 28 22 0 22 chr4 63472604 63472631 -138855716 + AT_rich Low_complexity Low_complexity 1 28 -17 1544 174 17 31 chr4 63472631 63472925 -138855422 - AluJo SINE Alu -20 292 3 28 22 0 22 chr4 63472925 63472943 -138855404 + AT_rich Low_complexity Low_complexity 28 45 0 357 294 33 26 chr4 63473192 63473345 -138855002 - MER69A DNA AcHobo -15 162 9 373 319 98 20 chr4 63473352 63473556 -138854791 - MIR SINE MIR -7 255 36 25 31 0 0 chr4 63473556 63473588 -138854759 + AT_rich Low_complexity Low_complexity 1 32 0 246 333 61 61 chr4 63473607 63473739 -138854608 - MIR3 SINE MIR -30 178 47 23 33 0 0 chr4 63474420 63474450 -138853897 + AT_rich Low_complexity Low_complexity 1 30 0 205 205 0 0 chr4 63475560 63475599 -138852748 + A-rich Low_complexity Low_complexity 1 39 0 335 385 45 24 chr4 63475862 63476109 -138852238 + HERVL LTR ERVL 2704 2955 -2041 2456 59 0 3 chr4 63476226 63476533 -138851814 + AluY SINE Alu 1 306 -5 364 386 48 30 chr4 63477545 63477941 -138850406 + HERVL LTR ERVL 4258 4660 -1104 383 326 82 12 chr4 63478000 63478408 -138849939 + HERVL LTR ERVL 4741 5213 -441 953 9 0 0 chr4 63479456 63479568 -138848779 - L1P2 LINE L1 -689 5465 5354 337 311 0 0 chr4 63479578 63479668 -138848679 - L1MC4 LINE L1 -1339 6703 6614 422 303 144 16 chr4 63479950 63480138 -138848209 - MIR SINE MIR -3 259 48 21 0 0 0 chr4 63481030 63481051 -138847296 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 63482007 63482030 -138846317 + AT_rich Low_complexity Low_complexity 1 23 0 1235 14 0 14 chr4 63483224 63483371 -138844976 - L1PA2 LINE L1 -5 6150 6006 248 284 70 85 chr4 63483704 63483905 -138844442 + L2 LINE L2 3111 3308 -5 367 366 107 34 chr4 63484753 63485288 -138843059 + L1MC4a LINE L1 5286 5859 -1949 53 40 0 0 chr4 63485414 63485488 -138842859 + AT_rich Low_complexity Low_complexity 1 74 0 211 231 144 39 chr4 63485502 63485606 -138842741 - MIR SINE MIR -30 232 118 2493 188 11 5 chr4 63485936 63486383 -138841964 - Tigger2 DNA MER2_type -1 2717 2268 319 239 0 0 chr4 63486370 63486437 -138841910 - Tigger2 DNA MER2_type -2651 67 1 * 26 50 0 0 chr4 63486559 63486599 -138841748 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 63486691 63486712 -138841635 + AT_rich Low_complexity Low_complexity 1 21 0 672 292 17 0 chr4 63487596 63487774 -138840573 + MER5A DNA MER1_type 9 189 0 1722 163 7 0 chr4 63489476 63489753 -138838594 + AluSx SINE Alu 1 279 -33 285 51 0 0 chr4 63489757 63489796 -138838551 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 681 325 20 7 chr4 63490181 63490409 -138837938 + MIR SINE MIR 2 227 -35 203 103 26 0 chr4 63490974 63491013 -138837334 + CT-rich Low_complexity Low_complexity 2 41 0 239 355 16 65 chr4 63491437 63491561 -138836786 - L2 LINE L2 -19 3253 3136 277 328 67 52 chr4 63491643 63491777 -138836570 - L2 LINE L2 -268 3045 2910 27 62 0 0 chr4 63491801 63491849 -138836498 + AT_rich Low_complexity Low_complexity 1 48 0 30 45 0 0 chr4 63492150 63492194 -138836153 + AT_rich Low_complexity Low_complexity 1 44 0 366 95 0 32 chr4 63492258 63492321 -138836026 + L1MC1 LINE L1 6271 6331 -2 198 0 0 0 chr4 63492783 63492805 -138835542 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 327 278 28 113 chr4 63492983 63493267 -138835080 - MLT1J LTR MaLR -244 267 8 358 347 71 57 chr4 63493555 63494203 -138834144 - L2 LINE L2 -9 3263 2600 2068 187 8 3 chr4 63495642 63496006 -138832341 + MLT2D LTR ERVL 1 366 -48 241 133 44 0 chr4 63496093 63496138 -138832209 + MLT2D LTR ERVL 464 510 -10 198 371 0 0 chr4 63496891 63496953 -138831394 + L2 LINE L2 3214 3275 -38 242 65 0 0 chr4 63498134 63498165 -138830182 + MLT1I LTR MaLR 99 129 -280 349 401 28 6 chr4 63498191 63498373 -138829974 + MLT1I LTR MaLR 200 385 -24 227 302 35 47 chr4 63498423 63498509 -138829838 - L2 LINE L2 0 3272 3188 180 0 0 0 chr4 63498544 63498564 -138829783 + (TC)n Simple_repeat Simple_repeat 1 20 0 217 238 33 33 chr4 63499055 63499206 -138829141 + (TA)n Simple_repeat Simple_repeat 2 152 0 242 289 83 65 chr4 63499478 63499755 -138828592 + MER90 LTR ERV1 250 531 -83 564 281 29 12 chr4 63501818 63501989 -138826358 + MLT1G1 LTR MaLR 1 174 -421 386 288 36 7 chr4 63502202 63502341 -138826006 + MLT1G LTR MaLR 437 579 -11 293 341 0 8 chr4 63502364 63502490 -138825857 - MIR SINE MIR -128 134 10 22 35 0 0 chr4 63502504 63502533 -138825814 + AT_rich Low_complexity Low_complexity 1 29 0 200 61 0 30 chr4 63505148 63505181 -138823166 - L2 LINE L2 -5 3308 3277 339 299 30 22 chr4 63505351 63505485 -138822862 + MLT1I LTR MaLR 72 206 -203 14631 59 2 3 chr4 63505629 63508309 -138820038 - L1PA5 LINE L1 -4 6150 3479 920 105 7 7 chr4 63508309 63508462 -138819885 - L1PA5 LINE L1 -2872 3274 3122 5672 11 0 0 chr4 63508479 63509122 -138819225 - L1HS LINE L1 -1 6154 5512 2265 7 0 0 chr4 63509120 63509505 -138818842 + L1P1 LINE L1 5126 5510 -645 * 21364 98 8 25 chr4 63509503 63510795 -138817552 - L1PA5 LINE L1 -3007 3139 1827 2073 42 4 0 chr4 63510795 63511054 -138817293 + L1PA4 LINE L1 5893 6152 -3 21364 98 8 25 chr4 63511054 63512942 -138815405 - L1PA5 LINE L1 -4319 1827 12 442 339 105 44 chr4 63513172 63513803 -138814544 + L2 LINE L2 2152 2820 -494 21 0 0 0 chr4 63513965 63513986 -138814361 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr4 63514363 63514387 -138813960 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1278 283 119 46 chr4 63514388 63514924 -138813423 + Zaphod DNA AcHobo 32 637 -3394 1825 200 22 100 chr4 63514924 63515525 -138812822 + MLT2B3 LTR ERVL 1 554 0 1278 283 119 46 chr4 63515525 63515720 -138812627 + Zaphod DNA AcHobo 637 816 -3215 70 68 0 0 chr4 63515729 63515862 -138812485 + AT_rich Low_complexity Low_complexity 1 133 0 1170 223 107 15 chr4 63515942 63516345 -138812002 + Zaphod DNA AcHobo 3591 4030 -1 2338 208 18 20 chr4 63516465 63516964 -138811383 + MLT2B2 LTR ERVL 11 508 -7 448 39 48 29 chr4 63517077 63517180 -138811167 + (TA)n Simple_repeat Simple_repeat 2 106 0 826 301 64 0 chr4 63517309 63517558 -138810789 + LTR16A LTR ERVL 173 437 -13 3709 158 13 0 chr4 63517956 63519055 -138809292 + L1PB1 LINE L1 4683 5791 -360 266 218 8 32 chr4 63519073 63519197 -138809150 + (CATA)n Simple_repeat Simple_repeat 2 122 0 258 32 0 0 chr4 63519203 63519234 -138809113 + (TG)n Simple_repeat Simple_repeat 1 31 0 2373 109 3 6 chr4 63519234 63519593 -138808754 + L1PB1 LINE L1 5794 6151 0 21 0 0 0 chr4 63519653 63519674 -138808673 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr4 63519724 63519762 -138808585 + AT_rich Low_complexity Low_complexity 1 38 0 1488 254 51 20 chr4 63520009 63520622 -138807725 + MER114 LTR ERV 17 648 0 21 0 0 0 chr4 63520786 63520807 -138807540 + AT_rich Low_complexity Low_complexity 1 21 0 3296 271 43 43 chr4 63520907 63522100 -138806247 - L1MC4a LINE L1 -6 7802 6607 234 62 0 0 chr4 63522100 63522132 -138806215 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 3296 271 43 43 chr4 63522132 63522269 -138806078 - L1MC4a LINE L1 -1200 6608 6472 1071 189 5 5 chr4 63522296 63522492 -138805855 - AluSg/x SINE Alu -17 295 100 424 248 28 0 chr4 63522496 63522605 -138805742 - L1MC4a LINE L1 -1328 6480 6369 24 0 0 0 chr4 63522882 63522906 -138805441 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr4 63522967 63522996 -138805351 + AT_rich Low_complexity Low_complexity 1 29 0 1615 188 27 62 chr4 63523508 63523583 -138804764 + MLT1B LTR MaLR 1 77 -313 794 212 77 111 chr4 63523583 63523961 -138804386 + MLT1A1 LTR MaLR 1 365 0 1615 188 27 62 chr4 63523961 63524289 -138804058 + MLT1B LTR MaLR 77 390 0 25 0 0 0 chr4 63525074 63525099 -138803248 + AT_rich Low_complexity Low_complexity 1 25 0 252 348 37 37 chr4 63525473 63525634 -138802713 - MIR SINE MIR -94 168 8 22 35 0 0 chr4 63525754 63525783 -138802564 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 63526058 63526079 -138802268 + AT_rich Low_complexity Low_complexity 1 21 0 4164 150 45 13 chr4 63526773 63527535 -138800812 - L1PA16 LINE L1 -1 6165 5380 296 198 0 12 chr4 63527721 63527802 -138800545 + CT-rich Low_complexity Low_complexity 1 80 0 180 261 0 0 chr4 63527809 63527874 -138800473 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 447 194 24 12 chr4 63528136 63528306 -138800041 + (TA)n Simple_repeat Simple_repeat 2 173 0 217 373 134 0 chr4 63529412 63529546 -138798801 + MIR SINE MIR 5 156 -106 259 296 257 7 chr4 63529646 63529798 -138798549 - MIR SINE MIR 0 262 73 1456 272 75 52 chr4 63530555 63531360 -138796987 - L1ME2 LINE L1 -9 6224 5402 655 314 99 62 chr4 63531373 63532103 -138796244 - L1ME2 LINE L1 -4751 1645 889 1455 127 113 67 chr4 63532211 63532494 -138795853 - AluSg SINE Alu -14 296 1 326 402 86 0 chr4 63532880 63533114 -138795233 - L1ME2 LINE L1 -6013 383 130 1064 279 100 7 chr4 63533409 63533828 -138794519 + MLT1C LTR MaLR 10 467 0 251 288 119 22 chr4 63533907 63534133 -138794214 - L1ME LINE L1 -259 5862 5615 2254 218 9 98 chr4 63534875 63535400 -138792947 + L1 LINE L1 4526 4943 -1203 2104 122 10 0 chr4 63535400 63535696 -138792651 + AluSc SINE Alu 1 299 -10 2254 218 9 98 chr4 63535696 63536052 -138792295 + L1 LINE L1 4943 5329 -817 1463 182 12 0 chr4 63536152 63536410 -138791937 + AluSc SINE Alu 39 299 -10 4792 170 59 14 chr4 63536425 63537536 -138790811 + L1PA16 LINE L1 5002 6157 -9 21 0 0 0 chr4 63537736 63537757 -138790590 + AT_rich Low_complexity Low_complexity 1 21 0 486 269 254 0 chr4 63538924 63539121 -138789226 - MIR SINE MIR -4 258 12 2062 143 15 1 chr4 63539388 63539845 -138788502 + MER84 LTR ERVI 1 507 0 180 0 0 0 chr4 63540246 63540266 -138788081 + (T)n Simple_repeat Simple_repeat 1 20 0 305 311 25 0 chr4 63540619 63540738 -138787609 + MIR SINE MIR 141 262 0 458 309 170 8 chr4 63541399 63541658 -138786689 - MLT1J1 LTR MaLR -128 318 18 23 33 0 0 chr4 63542409 63542439 -138785908 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 63542857 63542878 -138785469 + AT_rich Low_complexity Low_complexity 1 21 0 472 322 65 25 chr4 63543135 63543380 -138784967 + MIR SINE MIR 7 261 -1 240 57 0 0 chr4 63544071 63544106 -138784241 - Alu SINE Alu -265 35 1 233 289 39 10 chr4 63544458 63544562 -138783785 - L1M4 LINE L1 -2228 3918 3812 400 185 43 0 chr4 63544603 63544729 -138783618 - L1MD3 LINE L1 0 8042 7914 513 281 112 12 chr4 63544783 63545121 -138783226 + L1M4 LINE L1 2890 3261 -2885 477 266 112 26 chr4 63545169 63545481 -138782866 - L1M4 LINE L1 -3267 2879 2541 5613 172 27 67 chr4 63545484 63545838 -138782509 - L1PB2 LINE L1 -3 6148 5782 2037 152 0 0 chr4 63545838 63546147 -138782200 - AluSq SINE Alu -2 311 3 5613 172 27 67 chr4 63546147 63548252 -138780095 - L1PB2 LINE L1 -369 5782 3795 463 309 16 0 chr4 63548261 63548455 -138779892 - L1M4 LINE L1 -3615 2531 2335 406 312 18 24 chr4 63548501 63548671 -138779676 + L1MEc LINE L1 58 226 -6170 2698 183 51 4 chr4 63548807 63549337 -138779010 - L1PA13 LINE L1 -1131 5015 4461 5421 130 14 8 chr4 63549337 63550402 -138777945 + L1PA13 LINE L1 5026 6088 -75 8164 112 34 16 chr4 63550503 63551853 -138776494 + L1PA7 LINE L1 483 1856 -4605 20272 102 2 6 chr4 63551853 63555642 -138772705 + L1PA7 LINE L1 2666 6469 0 729 323 51 49 chr4 63555650 63556012 -138772335 + MLT1G1 LTR MaLR 128 587 -8 233 194 0 42 chr4 63556085 63556157 -138772190 + GA-rich Low_complexity Low_complexity 2 70 0 342 0 0 0 chr4 63556214 63556252 -138772095 + (CA)n Simple_repeat Simple_repeat 2 39 0 197 143 0 41 chr4 63556422 63556471 -138771876 + (TCC)n Simple_repeat Simple_repeat 2 48 0 205 298 93 50 chr4 63556584 63556662 -138771685 + MIR SINE MIR 29 102 -160 2344 168 29 0 chr4 63556662 63557078 -138771269 - MSTA LTR MaLR 0 428 1 205 298 93 50 chr4 63557078 63557160 -138771187 + MIR SINE MIR 102 196 -66 22 35 0 0 chr4 63557415 63557444 -138770903 + AT_rich Low_complexity Low_complexity 1 29 0 600 376 21 15 chr4 63557696 63558023 -138770324 - LTR16A LTR ERVL -12 438 110 25 65 0 0 chr4 63559986 63560032 -138768315 + AT_rich Low_complexity Low_complexity 1 46 0 27 62 0 0 chr4 63560220 63560268 -138768079 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr4 63560719 63560743 -138767604 + AT_rich Low_complexity Low_complexity 1 24 0 215 268 71 113 chr4 63561742 63561910 -138766437 + MIR SINE MIR 99 259 -3 650 228 222 0 chr4 63562353 63562533 -138765814 - MER58A DNA MER1_type -4 220 1 333 0 0 0 chr4 63564603 63564640 -138763707 + (T)n Simple_repeat Simple_repeat 1 37 0 249 336 56 49 chr4 63564768 63564911 -138763436 + MIR SINE MIR 45 188 -74 1579 231 66 16 chr4 63565070 63565512 -138762835 + MLT1C LTR MaLR 1 464 -3 188 371 56 11 chr4 63565589 63565678 -138762669 - MIR SINE MIR -95 113 21 21 0 0 0 chr4 63565865 63565886 -138762461 + AT_rich Low_complexity Low_complexity 1 21 0 216 274 16 16 chr4 63565994 63566056 -138762291 + L2 LINE L2 3252 3313 0 21 0 0 0 chr4 63567024 63567045 -138761302 + AT_rich Low_complexity Low_complexity 1 21 0 2986 227 204 29 chr4 63567546 63568612 -138759735 - MER52C LTR ERV1 0 1278 1 1698 164 0 20 chr4 63569130 63569422 -138758925 - AluSx SINE Alu -26 286 1 202 340 50 63 chr4 63570497 63570815 -138757532 - L2 LINE L2 -8 3305 2992 180 303 127 35 chr4 63571080 63571222 -138757125 - L2 LINE L2 -683 2631 2477 276 364 80 7 chr4 63571336 63571487 -138756860 - L2 LINE L2 -1081 2233 2072 1657 198 24 27 chr4 63571841 63572214 -138756133 + MLT1A2 LTR MaLR 1 372 -2 239 304 70 55 chr4 63572394 63572706 -138755641 - HAL1 LINE L1 -412 2095 1779 213 161 0 71 chr4 63573075 63573131 -138755216 + T-rich Low_complexity Low_complexity 3 54 0 905 192 41 0 chr4 63573564 63573736 -138754611 - MER58A DNA MER1_type -8 216 38 21 57 0 0 chr4 63575950 63575985 -138752362 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 63576011 63576039 -138752308 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr4 63576124 63576167 -138752180 + AT_rich Low_complexity Low_complexity 1 43 0 2122 129 0 16 chr4 63576602 63576919 -138751428 - AluSx SINE Alu 0 312 1 315 0 0 0 chr4 63579377 63579412 -138748935 + (TG)n Simple_repeat Simple_repeat 2 36 0 321 302 8 24 chr4 63580017 63580143 -138748204 - L3 LINE CR1 -299 1278 1155 942 288 78 35 chr4 63580177 63580663 -138747684 - L1ME1 LINE L1 -50 6116 5610 21 57 0 0 chr4 63581389 63581424 -138746923 + AT_rich Low_complexity Low_complexity 1 35 0 2355 97 0 3 chr4 63583546 63583857 -138744490 + AluSx SINE Alu 3 312 0 245 75 25 0 chr4 63584038 63584078 -138744269 + (TC)n Simple_repeat Simple_repeat 2 42 0 248 232 18 0 chr4 63584093 63584149 -138744198 + CT-rich Low_complexity Low_complexity 6 62 0 507 244 49 43 chr4 63584487 63584651 -138743696 - MIR SINE MIR -96 166 2 377 276 21 62 chr4 63584652 63584797 -138743550 - MIR SINE MIR -8 254 116 234 345 100 0 chr4 63586762 63586872 -138741475 + MIR3 SINE MIR 54 174 -34 229 138 190 0 chr4 63587240 63587298 -138741049 - Charlie8 DNA MER1_type -989 1428 1360 1374 173 8 17 chr4 63587720 63588238 -138740109 + LTR60 LTR ERV1 1 586 0 394 222 44 146 chr4 63588069 63588344 -138740003 + TAR1 Satellite telomeric 34 280 -1831 * 309 258 11 11 chr4 63588382 63588471 -138739876 + (TA)n Simple_repeat Simple_repeat 2 90 0 462 316 29 12 chr4 63588506 63588677 -138739670 + MLT1H1 LTR MaLR 3 176 -379 5145 156 12 24 chr4 63588681 63589567 -138738780 + L1P3 LINE L1 1 876 -5585 211 276 23 58 chr4 63589790 63589877 -138738470 - L2 LINE L2 -1 3271 3188 230 208 19 0 chr4 63589895 63589948 -138738399 + (TA)n Simple_repeat Simple_repeat 2 55 0 651 275 81 75 chr4 63590083 63590563 -138737784 - MLT1H LTR MaLR -49 500 18 212 361 113 8 chr4 63590714 63590847 -138737500 + L2 LINE L2 3167 3313 0 2007 165 36 137 chr4 63590850 63590933 -138737414 + L1MB4 LINE L1 5588 5678 -502 1942 195 10 10 chr4 63590933 63591323 -138737024 - MLT1B LTR MaLR 0 390 1 2007 165 36 137 chr4 63591323 63591720 -138736627 + L1MB4 LINE L1 5678 5987 -193 2075 115 14 0 chr4 63591720 63592016 -138736331 - AluSp SINE Alu -13 300 1 2007 165 36 137 chr4 63592016 63592193 -138736154 + L1MB4 LINE L1 5987 6180 0 352 177 13 0 chr4 63592204 63592283 -138736064 + L1MB8 LINE L1 6093 6172 -6 4200 113 57 5 chr4 63592284 63592937 -138735410 - L1PA10 LINE L1 -16 6152 5466 241 160 53 13 chr4 63592947 63593022 -138735325 + (TTTAA)n Simple_repeat Simple_repeat 1 78 0 6879 149 20 6 chr4 63593023 63594388 -138733959 - L1PA10 LINE L1 -690 5484 4099 1109 331 55 21 chr4 63594437 63595165 -138733182 + L1PBa LINE L1 3 755 -6108 450 261 0 9 chr4 63595203 63595314 -138733033 + AluJo SINE Alu 117 226 -86 * 785 179 69 0 chr4 63595303 63595448 -138732899 + AluJb SINE Alu 154 308 -4 196 370 9 28 chr4 63596733 63596841 -138731506 - MIR SINE MIR -56 206 101 302 354 70 13 chr4 63597325 63597554 -138730793 + L2 LINE L2 2123 2364 -950 241 170 57 0 chr4 63598798 63598851 -138729496 - MER116 DNA Mariner 0 80 25 29 60 0 0 chr4 63599123 63599173 -138729174 + AT_rich Low_complexity Low_complexity 1 50 0 27 49 0 0 chr4 63599420 63599461 -138728886 + AT_rich Low_complexity Low_complexity 1 41 0 303 274 156 45 chr4 63599642 63600040 -138728307 + L1ME3A LINE L1 4957 5398 -748 207 0 0 0 chr4 63600052 63600075 -138728272 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 608 296 67 63 chr4 63600090 63600550 -138727797 + L1ME3A LINE L1 5490 5951 -219 217 109 43 0 chr4 63600762 63600808 -138727539 + (TA)n Simple_repeat Simple_repeat 1 48 0 303 385 117 8 chr4 63600855 63601104 -138727243 - L2 LINE L2 -1156 2158 1883 310 299 103 0 chr4 63601394 63601511 -138726836 + MER7A DNA MER2_type 4 130 -216 1247 204 67 0 chr4 63601524 63601794 -138726553 + MER7A DNA MER2_type 61 346 0 21 0 0 0 chr4 63602708 63602729 -138725618 + AT_rich Low_complexity Low_complexity 1 21 0 594 126 21 28 chr4 63603729 63603872 -138724475 + GA-rich Low_complexity Low_complexity 3 144 0 788 227 28 14 chr4 63603971 63604187 -138724160 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr4 63605184 63605205 -138723142 + AT_rich Low_complexity Low_complexity 1 21 0 1438 110 0 37 chr4 63606941 63607185 -138721162 - AluSc SINE Alu 0 309 85 180 97 0 0 chr4 63607284 63607315 -138721032 + (CA)n Simple_repeat Simple_repeat 2 32 0 33 0 0 0 chr4 63607472 63607505 -138720842 + AT_rich Low_complexity Low_complexity 1 33 0 2069 85 0 0 chr4 63607670 63608006 -138720341 - AluY SINE Alu 0 336 1 358 408 14 14 chr4 63608228 63608375 -138719972 - MIR SINE MIR -115 147 1 315 0 0 0 chr4 63608979 63609014 -138719333 + (A)n Simple_repeat Simple_repeat 1 35 0 314 28 0 0 chr4 63610154 63610190 -138718157 + (A)n Simple_repeat Simple_repeat 1 36 0 2027 148 0 0 chr4 63611439 63611749 -138716598 + AluSx SINE Alu 1 310 -2 254 311 0 14 chr4 63612356 63612430 -138715917 + L2 LINE L2 3239 3311 -2 311 358 78 62 chr4 63612708 63613232 -138715115 + L2 LINE L2 2346 2860 -454 23 0 0 0 chr4 63613232 63613255 -138715092 + AT_rich Low_complexity Low_complexity 1 23 0 1820 158 0 13 chr4 63613234 63613538 -138714809 - AluSq SINE Alu -13 300 1 311 358 78 62 chr4 63613255 63613561 -138714786 + L2 LINE L2 2860 2904 -410 611 268 41 64 chr4 63614291 63614511 -138713836 - MIR SINE MIR -44 218 4 1493 184 7 0 chr4 63614713 63614995 -138713352 - L1MB1 LINE L1 -1 6167 5884 200 189 27 0 chr4 63616860 63616897 -138711450 + CT-rich Low_complexity Low_complexity 1 38 0 213 39 0 0 chr4 63616912 63616938 -138711409 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 1770 272 59 22 chr4 63617092 63617900 -138710447 - L1ME3 LINE L1 -2 6160 5323 366 307 66 17 chr4 63618058 63618299 -138710048 - L1ME3 LINE L1 -1031 5115 4863 348 64 0 0 chr4 63618462 63618509 -138709838 + (CA)n Simple_repeat Simple_repeat 2 48 0 209 399 76 18 chr4 63618605 63618798 -138709549 + L2 LINE L2 2667 2882 -432 1236 263 22 40 chr4 63618798 63619201 -138709146 - MSTD LTR MaLR 0 396 1 209 399 76 18 chr4 63619201 63619283 -138709064 + L2 LINE L2 2882 2958 -356 32 26 0 0 chr4 63619555 63619594 -138708753 + AT_rich Low_complexity Low_complexity 1 39 0 26 30 0 0 chr4 63621710 63621743 -138706604 + AT_rich Low_complexity Low_complexity 1 33 0 723 101 0 0 chr4 63621966 63622065 -138706282 + HY3 scRNA scRNA 2 100 -1 206 350 61 49 chr4 63622474 63622637 -138705710 - MIR3 SINE MIR -39 169 5 201 380 18 18 chr4 63622646 63622809 -138705538 - L2 LINE L2 -2 3311 3149 571 200 19 0 chr4 63622853 63622958 -138705389 + U6 snRNA snRNA 1 107 0 3125 233 43 14 chr4 63622959 63623887 -138704460 + L1M4 LINE L1 3946 4900 -1246 37 93 0 0 chr4 63623902 63624009 -138704338 + AT_rich Low_complexity Low_complexity 1 107 0 301 279 47 0 chr4 63624021 63624107 -138704240 - MLT1J LTR MaLR -313 198 109 339 89 0 0 chr4 63624163 63624219 -138704128 + (TG)n Simple_repeat Simple_repeat 2 57 0 280 300 104 87 chr4 63624267 63624591 -138703756 + L2 LINE L2 2724 3068 -245 3966 189 45 43 chr4 63625109 63626085 -138702262 - L1MA9 LINE L1 0 6312 5335 195 100 0 0 chr4 63627901 63627931 -138700416 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 6181 57 20 0 chr4 63628135 63628929 -138699418 - L1PA7 LINE L1 -4 6150 5341 225 0 0 0 chr4 63629267 63629292 -138699055 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 3052 9 0 0 chr4 63629292 63629636 -138698711 - L1PA2 LINE L1 -11 6144 5801 1753 134 13 13 chr4 63629660 63629965 -138698382 + L1MA9 LINE L1 5924 6228 -84 227 375 44 72 chr4 63630496 63630747 -138697600 + MLT1K LTR MaLR 13 256 -332 186 147 44 0 chr4 63630848 63630916 -138697431 + (TA)n Simple_repeat Simple_repeat 2 72 0 21 0 0 0 chr4 63631960 63631981 -138696366 + AT_rich Low_complexity Low_complexity 1 21 0 29004 61 4 4 chr4 63632122 63636758 -138691589 + L1PA5 LINE L1 1521 6152 -2 204 135 0 0 chr4 63637213 63637250 -138691097 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 1139 249 85 49 chr4 63637254 63637699 -138690648 - MLT2B1 LTR ERVL -57 463 3 373 322 101 0 chr4 63637704 63638025 -138690322 + L1MEc LINE L1 2172 2479 -3736 340 298 50 8 chr4 63639683 63639804 -138688543 + Charlie8 DNA MER1_type 74 199 -2218 216 209 0 0 chr4 63640375 63640418 -138687929 + (CATA)n Simple_repeat Simple_repeat 2 44 0 520 323 26 16 chr4 63640875 63641064 -138687283 + MIR3 SINE MIR 2 192 -16 358 231 239 22 chr4 63642244 63642378 -138685969 - MIR3 SINE MIR -9 199 37 21 0 0 0 chr4 63643200 63643221 -138685126 + AT_rich Low_complexity Low_complexity 1 21 0 308 147 147 0 chr4 63644290 63644358 -138683989 + MADE1 DNA Mariner 1 78 -2 23 54 0 0 chr4 63644859 63644896 -138683451 + AT_rich Low_complexity Low_complexity 1 37 0 210 333 69 0 chr4 63645571 63645643 -138682704 - L2 LINE L2 -8 3305 3229 201 311 47 68 chr4 63645661 63645809 -138682538 - L2 LINE L2 -596 2718 2574 483 160 0 0 chr4 63646074 63646168 -138682179 + (TA)n Simple_repeat Simple_repeat 1 94 0 237 303 0 0 chr4 63646169 63646258 -138682089 - L1MC4 LINE L1 -1339 6703 6615 3577 130 5 18 chr4 63646361 63646929 -138681418 + HERVL-A1 LTR ERVL 5094 5654 0 2584 106 3 5 chr4 63646929 63647297 -138681050 + MLT2A1 LTR ERVL 1 367 -77 231 120 0 80 chr4 63647273 63647323 -138681024 + LTR66 LTR ERVL 394 439 -171 * 239 113 0 75 chr4 63647341 63647394 -138680953 + LTR66 LTR ERVL 394 442 -168 267 168 0 46 chr4 63647395 63647526 -138680821 + (TA)n Simple_repeat Simple_repeat 2 126 0 369 109 0 11 chr4 63647526 63647547 -138680800 + MLT2A1 LTR ERVL 389 409 -35 261 0 0 0 chr4 63647547 63647576 -138680771 + (CA)n Simple_repeat Simple_repeat 2 30 0 369 109 0 11 chr4 63647576 63647619 -138680728 + MLT2A1 LTR ERVL 409 444 0 270 116 0 0 chr4 63649049 63649092 -138679255 + (CA)n Simple_repeat Simple_repeat 2 44 0 189 387 45 39 chr4 63649149 63649304 -138679043 - MIR SINE MIR -82 180 25 1637 190 42 25 chr4 63649918 63650276 -138678071 + THE1B LTR MaLR 1 364 0 25 31 0 0 chr4 63650283 63650315 -138678032 + AT_rich Low_complexity Low_complexity 1 32 0 305 226 19 123 chr4 63650793 63650899 -138677448 + MER5A DNA MER1_type 95 189 0 279 277 71 18 chr4 63651107 63651219 -138677128 + L2 LINE L2 2363 2480 -834 655 200 152 96 chr4 63651386 63651741 -138676606 - L1ME2 LINE L1 -13 6151 5777 522 313 47 27 chr4 63651872 63652128 -138676219 + MIR SINE MIR 2 262 0 490 333 52 41 chr4 63652346 63652715 -138675632 + MLT1J LTR MaLR 1 373 -138 3931 116 8 5 chr4 63653806 63654412 -138673935 + L1PA10 LINE L1 5548 6155 -13 26 0 0 0 chr4 63655191 63655217 -138673130 + AT_rich Low_complexity Low_complexity 1 26 0 244 193 91 34 chr4 63655217 63655305 -138673042 - L1MC4 LINE L1 -4 8038 7946 230 276 0 23 chr4 63655312 63655399 -138672948 + (TA)n Simple_repeat Simple_repeat 2 86 0 253 296 17 26 chr4 63655399 63655514 -138672833 - L1MC4 LINE L1 -124 7918 7805 1472 208 176 27 chr4 63655514 63655956 -138672391 - MLT2B2 LTR ERVL -7 508 1 2410 192 94 51 chr4 63655970 63656774 -138671573 - ERVL LTR ERVL -9 5645 4857 2154 204 87 2 chr4 63656781 63657232 -138671115 - ERVL LTR ERVL -4680 1084 596 255 170 0 0 chr4 63657247 63657294 -138671053 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 351 0 0 0 chr4 63657294 63657333 -138671014 + (TG)n Simple_repeat Simple_repeat 2 40 0 286 154 90 26 chr4 63657338 63657416 -138670931 - L1MC4a LINE L1 -1312 6496 6414 1548 169 36 24 chr4 63657532 63657863 -138670484 - L1MC3 LINE L1 -163 7622 7288 3675 148 25 49 chr4 63657863 63658449 -138669898 + MER50 LTR ERV1 1 567 -167 2157 96 38 0 chr4 63658449 63658741 -138669606 - AluSp SINE Alu -10 303 1 3675 148 25 49 chr4 63658741 63658883 -138669464 + MER50 LTR ERV1 567 711 -23 2162 209 45 65 chr4 63658883 63659525 -138668822 - L1MC3 LINE L1 -493 7292 6664 246 235 12 0 chr4 63659768 63659849 -138668498 + (TA)n Simple_repeat Simple_repeat 1 82 0 1492 233 52 31 chr4 63659858 63660304 -138668043 + MLT1D LTR MaLR 6 460 -45 2150 228 29 9 chr4 63660304 63660849 -138667498 - L1MC3 LINE L1 -1569 6216 5661 2844 108 2 10 chr4 63660967 63661374 -138666973 + MLT2A1 LTR ERVL 1 404 -40 413 136 45 8 chr4 63661374 63661506 -138666841 + (TA)n Simple_repeat Simple_repeat 1 137 0 30934 94 13 2 chr4 63661507 63666556 -138661791 + HERVL-A1 LTR ERVL 72 5168 -486 1857 171 54 20 chr4 63666673 63667024 -138661323 + MLT1A1 LTR MaLR 1 363 -2 428 297 19 0 chr4 63667061 63667216 -138661131 - L1MD1 LINE L1 -8 6234 6077 201 74 0 0 chr4 63667245 63667272 -138661075 + (TG)n Simple_repeat Simple_repeat 2 28 0 278 277 0 48 chr4 63667272 63667355 -138660992 - L1MD2 LINE L1 -231 6128 6050 490 159 40 79 chr4 63668186 63668312 -138660035 + L1 LINE L1 14 134 -7431 7042 234 12 9 chr4 63668316 63669762 -138658585 + L1 LINE L1 17 1467 -6098 234 169 14 84 chr4 63669767 63669838 -138658509 + L1 LINE L1 4604 4669 -2896 3854 197 180 31 chr4 63670223 63671333 -138657014 - MER52A LTR ERV1 -392 1363 2 386 345 24 10 chr4 63671356 63671565 -138656782 - L2 LINE L2 -884 2430 2219 21 0 0 0 chr4 63671775 63671796 -138656551 + AT_rich Low_complexity Low_complexity 1 21 0 961 172 42 0 chr4 63672794 63673009 -138655338 + L1MA9 LINE L1 6089 6312 0 23 0 0 0 chr4 63673364 63673387 -138654960 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr4 63673504 63673542 -138654805 + AT_rich Low_complexity Low_complexity 1 38 0 5542 170 48 6 chr4 63673577 63675668 -138652679 - L1MA3 LINE L1 0 7724 5555 9207 219 39 22 chr4 63675674 63678313 -138650034 - L1MA3 LINE L1 -2327 5238 2646 561 119 0 0 chr4 63678313 63678414 -138649933 + (TA)n Simple_repeat Simple_repeat 2 102 0 9207 219 39 22 chr4 63678414 63680238 -138648109 - L1MA3 LINE L1 -4919 2646 16 976 338 85 32 chr4 63680244 63681046 -138647301 - L2 LINE L2 -42 3271 2427 1776 145 6 43 chr4 63681128 63681487 -138646860 - MER4A LTR ERV1 0 664 261 601 125 10 10 chr4 63681489 63681585 -138646762 - MER4A LTR ERV1 -568 96 1 978 336 262 11 chr4 63681728 63682472 -138645875 - L2 LINE L2 -905 2409 1853 1743 171 29 29 chr4 63682472 63682847 -138645500 + THE1C LTR MaLR 1 375 0 978 336 262 11 chr4 63682847 63683387 -138644960 - L2 LINE L2 -1461 1853 802 339 286 154 11 chr4 63683388 63683570 -138644777 + MER3 DNA MER1_type 2 209 0 858 327 129 37 chr4 63683611 63684153 -138644194 - L2 LINE L2 -2647 667 76 317 302 127 63 chr4 63684949 63685412 -138642935 + L2 LINE L2 1986 2478 -836 22 88 0 0 chr4 63685860 63685917 -138642430 + AT_rich Low_complexity Low_complexity 1 57 0 1989 136 3 0 chr4 63686318 63686605 -138641742 - AluSq SINE Alu -25 288 1 1605 212 83 19 chr4 63686662 63687025 -138641322 - MSTD LTR MaLR -10 386 1 1814 64 5 0 chr4 63687197 63687415 -138640932 - AluSp SINE Alu -14 299 81 564 339 71 4 chr4 63688221 63688460 -138639887 + MIR SINE MIR 8 262 0 31 26 0 0 chr4 63689108 63689146 -138639201 + AT_rich Low_complexity Low_complexity 1 38 0 239 333 57 29 chr4 63689721 63689826 -138638521 + MIR3 SINE MIR 9 116 -92 216 302 82 60 chr4 63689832 63690014 -138638333 - MIR SINE MIR -1 261 76 21 82 0 0 chr4 63690244 63690293 -138638054 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr4 63690738 63690766 -138637581 + AT_rich Low_complexity Low_complexity 1 28 0 272 359 83 6 chr4 63691243 63691424 -138636923 - L2 LINE L2 -2859 455 261 351 252 118 16 chr4 63691859 63691935 -138636412 + MIR SINE MIR 71 138 -124 565 111 0 0 chr4 63691935 63692025 -138636322 + L1PA8 LINE L1 6083 6172 0 351 252 118 16 chr4 63692025 63692075 -138636272 + MIR SINE MIR 138 210 -52 225 0 0 0 chr4 63692133 63692158 -138636189 + (TTTAA)n Simple_repeat Simple_repeat 3 27 0 3224 23 0 5 chr4 63692158 63692535 -138635812 - L1PA4 LINE L1 -6 6149 5773 2134 70 56 7 chr4 63692694 63692978 -138635369 + AluY SINE Alu 1 298 -13 36 40 0 0 chr4 63693642 63693692 -138634655 + AT_rich Low_complexity Low_complexity 1 50 0 207 289 26 88 chr4 63693904 63694018 -138634329 - MIR SINE MIR -76 186 80 4083 37 0 0 chr4 63694175 63694660 -138633687 + L1PA3 LINE L1 5668 6152 -3 291 295 57 0 chr4 63694780 63694885 -138633462 - L2 LINE L2 -50 3263 3153 28 0 0 0 chr4 63695899 63695927 -138632420 + AT_rich Low_complexity Low_complexity 1 28 0 362 86 69 0 chr4 63696253 63696311 -138632036 - MLT2A2 LTR ERVL 0 453 392 1775 199 47 34 chr4 63696332 63696529 -138631818 - MLT2A2 LTR ERVL 0 554 361 3105 114 27 7 chr4 63696529 63696978 -138631369 - LTR22A LTR ERVK 0 458 1 1775 199 47 34 chr4 63696978 63697332 -138631015 - MLT2A2 LTR ERVL -193 361 1 1473 104 0 0 chr4 63697332 63697543 -138630804 - HERVL-A2 LTR ERVL 0 5654 5444 253 256 119 69 chr4 63697550 63697710 -138630637 + MLT1J2 LTR MaLR 283 450 0 1165 279 13 72 chr4 63698061 63698255 -138630092 + LTR53 LTR ERVL 21 225 -294 2105 115 3 3 chr4 63698255 63698550 -138629797 - AluSc SINE Alu -14 295 1 1165 279 13 72 chr4 63698550 63698885 -138629462 + LTR53 LTR ERVL 225 519 0 22 0 0 0 chr4 63699833 63699855 -138628492 + AT_rich Low_complexity Low_complexity 1 22 0 1259 238 42 12 chr4 63700623 63700959 -138627388 + LTR52 LTR ERVL 73 418 -3 226 206 73 29 chr4 63701104 63701172 -138627175 + L1MCc LINE L1 17 87 -6336 2079 113 3 7 chr4 63701515 63701808 -138626539 - AluSq SINE Alu -19 294 3 241 305 138 23 chr4 63702806 63702980 -138625367 - HAL1b LINE L1 -819 529 336 961 237 99 81 chr4 63703077 63703722 -138624625 + L1MC5 LINE L1 6852 7508 -453 230 248 60 77 chr4 63703779 63704078 -138624269 + L1MC5 LINE L1 7611 7904 -57 185 154 26 0 chr4 63704873 63704912 -138623435 + GA-rich Low_complexity Low_complexity 2 41 0 2001 102 3 62 chr4 63705250 63705554 -138622793 - AluY SINE Alu -25 286 1 39288 81 6 5 chr4 63706746 63712882 -138615465 + L1PA5 LINE L1 1 6173 0 334 0 0 0 chr4 63712882 63712919 -138615428 + (TAA)n Simple_repeat Simple_repeat 3 180 0 606 280 37 74 chr4 63713066 63713445 -138614902 - MLT1A1 LTR MaLR 0 365 1 321 167 0 56 chr4 63714097 63714169 -138614178 + L1MC4 LINE L1 6636 6703 -1339 183 222 0 0 chr4 63714173 63714218 -138614129 + (TA)n Simple_repeat Simple_repeat 1 45 0 245 264 22 44 chr4 63714221 63714312 -138614035 + L1MC4 LINE L1 6614 6702 -1340 527 217 0 14 chr4 63714316 63714454 -138613893 + (TATATG)n Simple_repeat Simple_repeat 3 138 0 250 287 23 0 chr4 63714469 63714556 -138613791 - L1MC4 LINE L1 -1339 6703 6615 8746 179 43 8 chr4 63714676 63717330 -138611017 + L1MA2 LINE L1 3390 6147 -157 3362 120 16 4 chr4 63717330 63717838 -138610509 - MER75 DNA T2_type 0 514 1 8746 179 43 8 chr4 63717838 63718002 -138610345 + L1MA2 LINE L1 6147 6304 0 13149 196 39 31 chr4 63718044 63720852 -138607495 + L1M1 LINE L1 181 2965 -4600 1884 141 6 39 chr4 63720852 63721164 -138607183 + AluSx SINE Alu 1 302 -10 13149 196 39 31 chr4 63721164 63721228 -138607119 + L1M1 LINE L1 2965 3027 -4538 2278 189 12 2 chr4 63721228 63721652 -138606695 - MSTA LTR MaLR 0 428 1 13149 196 39 31 chr4 63721652 63724568 -138603779 + L1M1 LINE L1 3027 6821 -744 1562 150 7 33 chr4 63724569 63724869 -138603478 + L1MA2 LINE L1 6013 6304 0 1926 121 22 0 chr4 63725274 63725574 -138602773 - AluSg SINE Alu 0 307 2 222 174 0 0 chr4 63725824 63725870 -138602477 + CT-rich Low_complexity Low_complexity 1 46 0 863 69 7 28 chr4 63725870 63726014 -138602333 + (TTCC)n Simple_repeat Simple_repeat 3 143 0 192 217 33 50 chr4 63726299 63726359 -138601988 - L2 LINE L2 -13 3300 3242 2434 63 3 35 chr4 63726527 63726846 -138601501 - AluY SINE Alu 0 311 3 253 255 32 32 chr4 63727319 63727413 -138600934 - L3 LINE CR1 -100 1477 1384 230 355 48 24 chr4 63727418 63727542 -138600805 - L2 LINE L2 -1 3271 3145 439 354 110 38 chr4 63727559 63728006 -138600341 - L3 LINE CR1 -216 1361 883 23 68 0 0 chr4 63728874 63728918 -138599429 + AT_rich Low_complexity Low_complexity 1 44 0 268 395 67 38 chr4 63729375 63729717 -138598630 - L2 LINE L2 -9 3263 2912 266 330 17 17 chr4 63731476 63731591 -138596756 - MER94 DNA DNA -16 118 4 286 395 36 20 chr4 63731617 63731870 -138596477 + L2 LINE L2 2808 3064 -208 180 0 0 0 chr4 63732841 63732861 -138595486 + (A)n Simple_repeat Simple_repeat 1 20 0 375 179 33 7 chr4 63732953 63733104 -138595243 + (TA)n Simple_repeat Simple_repeat 2 156 0 5482 135 21 11 chr4 63733382 63734276 -138594071 - L1MA3 LINE L1 0 6305 5403 1752 242 85 30 chr4 63734323 63734996 -138593351 - MER21B LTR ERV1 -2 861 98 282 302 42 21 chr4 63735033 63735129 -138593218 - MER21B LTR ERV1 -765 98 1 3049 248 133 25 chr4 63735618 63736915 -138591432 - L1MC4 LINE L1 -137 7905 6469 263 232 0 18 chr4 63737865 63737921 -138590426 + GA-rich Low_complexity Low_complexity 3 57 0 21 0 0 0 chr4 63738374 63738395 -138589952 + AT_rich Low_complexity Low_complexity 1 21 0 277 235 15 0 chr4 63738890 63738958 -138589389 - MLT1G1 LTR MaLR 0 595 527 19483 188 30 15 chr4 63739888 63743336 -138585011 + L1MA3 LINE L1 7 3555 -4010 369 0 0 0 chr4 63743336 63743377 -138584970 + (CA)n Simple_repeat Simple_repeat 2 42 0 19483 188 30 15 chr4 63743377 63744728 -138583619 + L1MA3 LINE L1 3555 4884 -2681 320 125 0 18 chr4 63744728 63744784 -138583563 - MLT2A1 LTR ERVL 0 453 399 228 111 0 56 chr4 63744751 63744805 -138583542 - LTR66 LTR ERVL -162 448 398 * 472 168 6 62 chr4 63744810 63744949 -138583398 + (TA)n Simple_repeat Simple_repeat 2 132 -21 204 40 0 0 chr4 63744949 63744974 -138583373 + (TG)n Simple_repeat Simple_repeat 2 26 0 472 168 6 62 chr4 63744974 63744995 -138583352 + (TA)n Simple_repeat Simple_repeat 132 153 0 2764 95 26 3 chr4 63744998 63745388 -138582959 - MLT2A1 LTR ERVL -45 399 1 8237 178 21 14 chr4 63745388 63748211 -138580136 + L1MA3 LINE L1 4880 7724 0 21 0 0 0 chr4 63748211 63748232 -138580115 + AT_rich Low_complexity Low_complexity 1 21 0 2157 134 8 16 chr4 63748342 63748707 -138579640 + L1PB2 LINE L1 5788 6149 -2 1225 272 108 40 chr4 63748719 63749732 -138578615 + L1ME3A LINE L1 5042 6161 -9 2287 97 3 0 chr4 63750261 63750561 -138577786 - AluSq SINE Alu -12 301 1 1679 200 10 3 chr4 63751888 63752198 -138576149 + AluJo SINE Alu 1 312 0 36 53 0 0 chr4 63752239 63752296 -138576051 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr4 63752489 63752512 -138575835 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 63752808 63752829 -138575518 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 63752870 63752895 -138575452 + AT_rich Low_complexity Low_complexity 1 25 0 303 377 55 34 chr4 63753027 63753319 -138575028 + LTR16A LTR ERVL 105 402 -48 520 354 54 18 chr4 63753476 63753919 -138574428 + HERV16 LTR ERVL 194 652 -4344 383 302 59 76 chr4 63754384 63754738 -138573609 + HERV16 LTR ERVL 1260 1607 -4157 798 94 39 0 chr4 63754863 63754990 -138573357 + L1MA9 LINE L1 6181 6312 0 1303 158 27 9 chr4 63755014 63755235 -138573112 + AluJb SINE Alu 86 310 -2 207 0 0 0 chr4 63755443 63755466 -138572881 + (A)n Simple_repeat Simple_repeat 1 23 0 1762 322 77 70 chr4 63755473 63756720 -138571627 + HERV16 LTR ERVL 1665 2927 -2145 2519 55 0 0 chr4 63756720 63757031 -138571316 - AluY SINE Alu 0 311 1 1762 322 77 70 chr4 63757031 63757269 -138571078 + HERV16 LTR ERVL 2927 3162 -1910 279 224 0 0 chr4 63757453 63757529 -138570818 - L1M4 LINE L1 -3637 2509 2434 23 33 0 0 chr4 63757826 63757856 -138570491 + AT_rich Low_complexity Low_complexity 1 30 0 1649 126 159 9 chr4 63758235 63758561 -138569786 - THE1C LTR MaLR 0 375 1 1674 164 63 0 chr4 63758743 63759012 -138569335 - AluSx SINE Alu -26 286 1 248 372 47 39 chr4 63759885 63760143 -138568204 + L2 LINE L2 2950 3209 -104 287 301 0 16 chr4 63760249 63760362 -138567985 + GA-rich Low_complexity Low_complexity 1 111 0 1537 246 121 26 chr4 63760442 63760937 -138567410 - MLT1F LTR MaLR 0 542 1 1850 149 13 7 chr4 63761458 63761766 -138566581 - AluSx SINE Alu -2 310 1 581 254 0 0 chr4 63762194 63762336 -138566011 - MLT1-int LTR MaLR -765 606 465 880 287 91 52 chr4 63762685 63763204 -138565143 - MLT1F LTR MaLR -3 539 1 314 186 12 0 chr4 63763351 63763437 -138564910 + (TA)n Simple_repeat Simple_repeat 2 88 0 198 71 0 0 chr4 63763439 63763467 -138564880 + (TG)n Simple_repeat Simple_repeat 1 28 0 1786 166 4 0 chr4 63763467 63763745 -138564602 - AluSx SINE Alu -31 281 3 1746 167 53 0 chr4 63764818 63765100 -138563247 - AluJo SINE Alu -15 297 1 30 0 0 0 chr4 63765210 63765240 -138563107 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 63766177 63766199 -138562148 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr4 63767996 63768025 -138560322 + AT_rich Low_complexity Low_complexity 1 29 0 337 355 37 19 chr4 63768160 63768374 -138559973 + MLT1L LTR MaLR 40 257 -358 365 355 23 0 chr4 63768464 63768636 -138559711 + L2 LINE L2 2582 2757 -557 28 71 0 0 chr4 63768879 63768935 -138559412 + AT_rich Low_complexity Low_complexity 1 56 0 1470 287 62 40 chr4 63769641 63770690 -138557657 - L1ME3A LINE L1 -48 6402 5327 428 220 133 7 chr4 63770765 63770915 -138557432 - MER3 DNA MER1_type -11 198 30 800 296 104 34 chr4 63770952 63771796 -138556551 - L1ME3A LINE L1 -1198 5228 4326 585 304 152 9 chr4 63771929 63772264 -138556083 + LTR16C LTR ERVL 106 488 -3 547 295 47 0 chr4 63772365 63772558 -138555789 - L1ME3A LINE L1 -2260 4166 3965 744 233 56 40 chr4 63772585 63772644 -138555703 - MER67D LTR ERV1 0 514 457 2267 107 0 0 chr4 63772644 63772943 -138555404 - AluSx SINE Alu -13 299 1 744 233 56 40 chr4 63772943 63773132 -138555215 - MER67D LTR ERV1 -57 457 262 1119 189 179 28 chr4 63773384 63773889 -138554458 + LTR29 LTR ERV1 1 622 0 543 280 95 44 chr4 63773944 63774473 -138553874 - L1MCa LINE L1 -4689 1918 1173 1214 230 98 35 chr4 63774623 63774900 -138553447 - MSTD LTR MaLR -1 395 137 266 0 0 29 chr4 63774900 63774935 -138553412 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1993 115 0 31 chr4 63774935 63775223 -138553124 - AluSx SINE Alu -33 279 1 1214 230 98 35 chr4 63775223 63775313 -138553034 - MSTD LTR MaLR -258 138 4 418 246 45 27 chr4 63775447 63775557 -138552790 - MER92B LTR ERV1 -524 112 1 961 314 32 89 chr4 63777766 63777872 -138550475 + MLT2F LTR ERVL 42 152 -511 234 0 0 0 chr4 63777872 63777898 -138550449 + (TTG)n Simple_repeat Simple_repeat 2 27 0 961 314 32 89 chr4 63777898 63778412 -138549935 + MLT2F LTR ERVL 152 627 -36 600 326 25 4 chr4 63778902 63779138 -138549209 + ERVL LTR ERVL 462 702 -5062 543 325 43 26 chr4 63779344 63779646 -138548701 + ERVL LTR ERVL 965 1271 -4383 1852 44 4 0 chr4 63779768 63779996 -138548351 + L1PA5 LINE L1 5914 6142 -12 192 77 0 0 chr4 63779996 63780022 -138548325 + (TA)n Simple_repeat Simple_repeat 2 27 0 1143 313 44 31 chr4 63780134 63780535 -138547812 + MLT2F LTR ERVL 179 588 -75 210 37 0 0 chr4 63780535 63780562 -138547785 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1143 313 44 31 chr4 63780562 63780639 -138547708 + MLT2F LTR ERVL 588 663 0 28 48 0 0 chr4 63780884 63780926 -138547421 + AT_rich Low_complexity Low_complexity 1 42 0 258 205 36 0 chr4 63782271 63782383 -138545964 + (CATA)n Simple_repeat Simple_repeat 1 116 0 734 313 40 0 chr4 63782488 63782715 -138545632 + MIR SINE MIR 6 241 -21 256 258 25 129 chr4 63785593 63785756 -138542591 + L2 LINE L2 3015 3160 -112 1891 194 55 5 chr4 63785993 63786390 -138541957 - MER47B DNA MER2_type 0 418 2 1990 236 54 17 chr4 63786957 63787583 -138540764 - LTR27 LTR ERV1 -141 495 3 13952 171 36 45 chr4 63787585 63791992 -138536355 - LTR27-int LTR ERV1 -1 6995 632 429 191 0 24 chr4 63791994 63792078 -138536269 - MER52-int LTR ERV1 -887 3993 3912 4487 198 101 44 chr4 63792083 63793078 -138535269 - MER52-int LTR ERV1 -5180 2238 598 189 0 0 0 chr4 63793078 63793099 -138535248 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4487 198 101 44 chr4 63793099 63793304 -138535043 - MER52-int LTR ERV1 -6820 598 406 463 267 118 32 chr4 63793291 63793512 -138534835 - MER52-int LTR ERV1 -6717 279 40 * 1347 223 13 20 chr4 63795240 63795541 -138532806 - AluJo SINE Alu -11 301 3 4587 172 37 24 chr4 63796185 63796318 -138532029 + L1PA16 LINE L1 4844 4974 -1192 2044 188 5 13 chr4 63796318 63796696 -138531651 - THE1C LTR MaLR 0 375 1 4587 172 37 24 chr4 63796696 63797365 -138530982 + L1PA16 LINE L1 4974 5673 -493 402 21 0 0 chr4 63797365 63797412 -138530935 + (CA)n Simple_repeat Simple_repeat 2 48 0 4587 172 37 24 chr4 63797412 63797898 -138530449 + L1PA16 LINE L1 5673 6151 -15 30 27 0 0 chr4 63798627 63798664 -138529683 + AT_rich Low_complexity Low_complexity 1 37 0 29 28 0 0 chr4 63798691 63798727 -138529620 + AT_rich Low_complexity Low_complexity 1 36 0 196 344 0 0 chr4 63799447 63799511 -138528836 - L2 LINE L2 -86 3227 3164 22 80 0 0 chr4 63799604 63799654 -138528693 + AT_rich Low_complexity Low_complexity 1 50 0 2100 138 0 6 chr4 63799725 63800037 -138528310 + AluSg SINE Alu 1 310 0 259 294 0 0 chr4 63800046 63800114 -138528233 - MIR SINE MIR -7 255 188 213 365 40 0 chr4 63800139 63800213 -138528134 - MIR SINE MIR -179 83 7 203 125 0 50 chr4 63801431 63801471 -138526876 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 22 80 0 0 chr4 63802365 63802415 -138525932 + AT_rich Low_complexity Low_complexity 1 50 0 1506 218 0 13 chr4 63802488 63802800 -138525547 + AluSg SINE Alu 3 310 0 366 212 0 0 chr4 63802809 63802875 -138525472 - MIR SINE MIR -9 253 188 328 300 50 0 chr4 63802897 63802977 -138525370 - MIR SINE MIR -176 86 3 2333 128 17 6 chr4 63804635 63804995 -138523352 + THE1B LTR MaLR 1 364 0 700 251 116 21 chr4 63805181 63805577 -138522770 - MLT1C LTR MaLR 0 467 49 3064 64 0 6 chr4 63806463 63806899 -138521448 - L1PA6 LINE L1 -511 5643 5210 2931 48 6 0 chr4 63806898 63807256 -138521091 + L1PA6 LINE L1 5655 6014 -140 * 2020 76 3 35 chr4 63807424 63807758 -138520589 + AluY SINE Alu 1 325 0 449 303 54 7 chr4 63807829 63808009 -138520338 - MIR SINE MIR -69 139 4 25 0 0 0 chr4 63808088 63808113 -138520234 + AT_rich Low_complexity Low_complexity 1 25 0 8865 214 11 8 chr4 63808890 63810813 -138517534 - L1P LINE L1 -769 5377 3449 283 279 12 0 chr4 63812109 63812195 -138516152 + (TA)n Simple_repeat Simple_repeat 2 88 0 293 211 0 40 chr4 63812528 63812604 -138515743 - LTR33A LTR ERVL -6 517 445 1190 236 39 75 chr4 63813572 63814090 -138514257 - MLT1D LTR MaLR -2 503 5 37 81 0 0 chr4 63816731 63816817 -138511530 + AT_rich Low_complexity Low_complexity 1 86 0 1885 140 0 17 chr4 63816947 63817239 -138511108 + AluSx SINE Alu 3 289 -23 267 216 54 27 chr4 63817462 63817536 -138510811 - L2 LINE L2 -4 3309 3234 184 349 91 40 chr4 63817648 63817823 -138510524 - L2 LINE L2 -7 3265 3082 1405 249 66 94 chr4 63818811 63819266 -138509081 - L1M4c LINE L1 -4771 2188 1722 2087 120 3 13 chr4 63819266 63819574 -138508773 - AluSq SINE Alu -8 305 1 1405 249 66 94 chr4 63819574 63819897 -138508450 - L1M4c LINE L1 -5237 1722 1391 1373 190 48 31 chr4 63819897 63820187 -138508160 - AluJo SINE Alu -17 295 1 1405 249 66 94 chr4 63820187 63820336 -138508011 - L1M4c LINE L1 -5568 1391 1239 196 30 61 0 chr4 63820336 63820369 -138507978 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 1405 249 66 94 chr4 63820369 63820820 -138507527 - L1M4c LINE L1 -5720 1239 846 239 307 52 20 chr4 63821021 63821174 -138507173 - L1M4c LINE L1 -6682 177 20 323 143 34 50 chr4 63821219 63821338 -138507009 + (TA)n Simple_repeat Simple_repeat 2 118 0 21 0 0 0 chr4 63821366 63821387 -138506960 + AT_rich Low_complexity Low_complexity 1 21 0 267 79 0 0 chr4 63821555 63821593 -138506754 + (TG)n Simple_repeat Simple_repeat 1 38 0 23 0 0 0 chr4 63821736 63821759 -138506588 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr4 63822019 63822058 -138506289 + AT_rich Low_complexity Low_complexity 1 39 0 21 82 0 0 chr4 63822099 63822148 -138506199 + AT_rich Low_complexity Low_complexity 1 49 0 30 83 0 0 chr4 63822226 63822298 -138506049 + AT_rich Low_complexity Low_complexity 1 72 0 2165 193 55 0 chr4 63822350 63822754 -138505593 - MSTB LTR MaLR 0 426 1 8968 222 86 60 chr4 63823604 63829552 -138498795 - L1MB3 LINE L1 -4 6494 1 204 40 0 0 chr4 63829568 63829593 -138498754 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1344 218 19 36 chr4 63829593 63830098 -138498249 - L1M4c LINE L1 -5759 625 14 1764 153 0 38 chr4 63830155 63830469 -138497878 - AluSx SINE Alu -8 304 3 24 32 0 0 chr4 63830534 63830565 -138497782 + AT_rich Low_complexity Low_complexity 1 31 0 1802 176 60 128 chr4 63830819 63831020 -138497327 + MLT2B2 LTR ERVL 3 216 -299 293 45 0 23 chr4 63831020 63831064 -138497283 + (CAA)n Simple_repeat Simple_repeat 2 44 0 1802 176 60 128 chr4 63831064 63831391 -138496956 + MLT2B2 LTR ERVL 216 495 -20 33 43 0 0 chr4 63831541 63831588 -138496759 + AT_rich Low_complexity Low_complexity 1 47 0 289 216 0 0 chr4 63832259 63832310 -138496037 + MLT1E1 LTR MaLR 1 51 -603 21 0 0 0 chr4 63832847 63832868 -138495479 + AT_rich Low_complexity Low_complexity 1 21 0 221 207 9 45 chr4 63833599 63833710 -138494637 + (TATATG)n Simple_repeat Simple_repeat 3 109 0 372 262 9 65 chr4 63833787 63833894 -138494453 + MER5A DNA MER1_type 17 117 -72 870 141 120 0 chr4 63833899 63834041 -138494306 + AluSc SINE Alu 1 159 -150 183 338 29 0 chr4 63834042 63834110 -138494237 + MER5A DNA MER1_type 120 189 0 6371 209 13 1 chr4 63834565 63835735 -138492612 - L1M1 LINE L1 -5864 1701 518 7451 156 95 51 chr4 63835736 63837360 -138490987 - pTR5 LTR ERV1 0 2438 743 2270 204 38 18 chr4 63837360 63837855 -138490492 - L1M1 LINE L1 -7042 523 19 809 139 0 0 chr4 63837855 63837977 -138490370 - L1PA16 LINE L1 -11 6155 6034 241 307 62 26 chr4 63838229 63838538 -138489809 - L1MEd LINE L1 -4881 1238 919 447 267 24 60 chr4 63838677 63838882 -138489465 - MLT1G3 LTR MaLR -143 418 177 26 30 0 0 chr4 63838923 63838956 -138489391 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr4 63839119 63839142 -138489205 + AT_rich Low_complexity Low_complexity 1 23 0 443 296 61 24 chr4 63839490 63839703 -138488644 - L2 LINE L2 -2 3311 3091 1559 178 4 0 chr4 63840094 63840353 -138487994 - AluSx SINE Alu -18 294 35 27 49 0 0 chr4 63840596 63840637 -138487710 + AT_rich Low_complexity Low_complexity 1 41 0 34035 36 2 0 chr4 63840637 63845609 -138482738 - L1PA3 LINE L1 -3 6152 1171 49 32 0 0 chr4 63846466 63846529 -138481818 + AT_rich Low_complexity Low_complexity 1 63 0 27 92 0 0 chr4 63846599 63846675 -138481672 + AT_rich Low_complexity Low_complexity 1 76 0 24 67 0 0 chr4 63846958 63847003 -138481344 + AT_rich Low_complexity Low_complexity 1 45 0 1643 223 14 35 chr4 63847815 63848237 -138480110 - MLT2D LTR ERVL 0 414 2 363 302 76 33 chr4 63848274 63848575 -138479772 + L1MC4 LINE L1 5681 5994 -1814 342 67 0 0 chr4 63849098 63849143 -138479204 + (CA)n Simple_repeat Simple_repeat 2 46 0 236 77 26 0 chr4 63850318 63850357 -138477990 + (TAA)n Simple_repeat Simple_repeat 1 40 0 944 198 69 0 chr4 63850673 63850875 -138477472 - MER20 DNA MER1_type -3 216 1 307 294 0 0 chr4 63851094 63851203 -138477144 + L1M4 LINE L1 2683 2791 -3355 283 256 109 7 chr4 63851207 63851344 -138477003 + L1MC4 LINE L1 6981 7131 -911 2119 243 32 46 chr4 63851365 63852062 -138476285 + L1MC4 LINE L1 7209 7895 -147 33 56 0 0 chr4 63852116 63852170 -138476177 + AT_rich Low_complexity Low_complexity 1 54 0 456 283 158 5 chr4 63852622 63852806 -138475541 + MIR SINE MIR 7 218 -44 2565 49 0 0 chr4 63853328 63853636 -138474711 - AluY SINE Alu -3 308 1 602 273 97 50 chr4 63853636 63854130 -138474217 + MLT1E LTR MaLR 7 580 -13 24 32 0 0 chr4 63854987 63855018 -138473329 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr4 63855176 63855219 -138473128 + AT_rich Low_complexity Low_complexity 1 43 0 183 80 0 0 chr4 63855282 63855307 -138473040 + (TG)n Simple_repeat Simple_repeat 2 26 0 662 174 9 0 chr4 63855453 63855568 -138472779 - MLT1B LTR MaLR 0 390 275 2167 117 0 3 chr4 63856254 63856563 -138471784 + AluY SINE Alu 1 308 -3 25 51 0 0 chr4 63856650 63856689 -138471658 + AT_rich Low_complexity Low_complexity 1 39 0 22 70 0 0 chr4 63856918 63856961 -138471386 + AT_rich Low_complexity Low_complexity 1 43 0 223 260 0 14 chr4 63857066 63857139 -138471208 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 1081 173 92 1 chr4 63857354 63857799 -138470548 + MER34 LTR ERV1 27 540 -2 1230 247 40 17 chr4 63859299 63859647 -138468700 - MLT1A1 LTR MaLR 0 365 10 352 265 80 12 chr4 63859888 63860050 -138468297 - MER104 DNA Tc2 -3 177 5 2097 132 3 0 chr4 63860667 63861021 -138467326 - AluSq SINE Alu 0 355 1 288 303 93 31 chr4 63861146 63861308 -138467039 - MIR SINE MIR -13 249 78 14062 158 42 24 chr4 63861396 63865189 -138463158 + L1MA2 LINE L1 469 4360 -3205 8610 168 21 11 chr4 63865191 63866627 -138461720 + L1MA2 LINE L1 4962 6443 -1280 2144 107 0 10 chr4 63866627 63866926 -138461421 + AluSp SINE Alu 1 296 -17 8610 168 21 11 chr4 63866926 63868221 -138460126 + L1MA2 LINE L1 6443 7723 0 24 0 0 0 chr4 63868221 63868245 -138460102 + AT_rich Low_complexity Low_complexity 1 24 0 956 196 0 5 chr4 63868560 63868754 -138459593 + L1 LINE L1 3683 3875 -2271 1465 237 76 46 chr4 63868858 63869462 -138458885 + L1MC5 LINE L1 6615 7236 -725 240 115 0 19 chr4 63869499 63869551 -138458796 - L1MA9 LINE L1 -2 6310 6260 329 324 75 23 chr4 63869989 63870162 -138458185 + MLT1J2 LTR MaLR 254 435 -15 366 107 0 0 chr4 63870760 63870816 -138457531 + (CA)n Simple_repeat Simple_repeat 1 56 0 558 226 115 65 chr4 63870816 63871033 -138457314 + L1MC5 LINE L1 6730 6957 -1004 245 194 20 20 chr4 63871377 63871475 -138456872 + GA-rich Low_complexity Low_complexity 2 99 0 5053 131 32 2 chr4 63871852 63873142 -138455205 - L1PA15 LINE L1 -2 6163 4825 2201 123 0 7 chr4 63873157 63873465 -138454882 + AluSc SINE Alu 1 306 -3 555 200 0 0 chr4 63873911 63874001 -138454346 - MER2 DNA MER2_type -255 90 1 23 33 0 0 chr4 63874433 63874463 -138453884 + AT_rich Low_complexity Low_complexity 1 30 0 468 35 0 0 chr4 63874570 63874628 -138453719 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 468 248 0 0 chr4 63874629 63874730 -138453617 - AluJb SINE Alu -27 285 185 224 301 58 10 chr4 63874741 63874844 -138453503 + MIR SINE MIR 111 218 -44 1766 152 13 26 chr4 63876570 63876872 -138451475 + AluSx SINE Alu 4 301 -11 21 0 0 0 chr4 63876998 63877019 -138451328 + AT_rich Low_complexity Low_complexity 1 21 0 1163 147 46 25 chr4 63877761 63877999 -138450348 - MER2 DNA MER2_type 0 345 103 267 103 0 0 chr4 63878109 63878148 -138450199 + (A)n Simple_repeat Simple_repeat 1 39 0 229 141 118 59 chr4 63878241 63878326 -138450021 - LTR37A LTR ERV1 -11 415 326 284 203 30 193 chr4 63878416 63878618 -138449729 - LTR37B LTR ERV1 -165 300 93 39 68 0 0 chr4 63878756 63878830 -138449517 + AT_rich Low_complexity Low_complexity 1 74 0 619 290 116 5 chr4 63878936 63879160 -138449187 - MLT1E2 LTR MaLR -8 618 370 187 404 36 36 chr4 63880399 63880622 -138447725 + L3 LINE CR1 986 1208 -369 1349 202 148 21 chr4 63880951 63881288 -138447059 - MSTA LTR MaLR -48 380 1 7713 156 33 66 chr4 63881288 63882478 -138445869 - MSTA-int LTR MaLR 0 1580 457 2173 101 7 29 chr4 63882478 63882784 -138445563 + AluSx SINE Alu 1 299 -13 7713 156 33 66 chr4 63882784 63883225 -138445122 - MSTA-int LTR MaLR -1123 457 3 1851 179 119 10 chr4 63883227 63883613 -138444734 - MSTA LTR MaLR 0 428 1 2517 152 13 13 chr4 63883623 63884397 -138443950 + L1M1 LINE L1 4843 5614 -690 200 255 9 28 chr4 63884417 63884523 -138443824 + (TTTA)n Simple_repeat Simple_repeat 2 105 0 * 277 236 11 0 chr4 63884446 63884535 -138443812 + (TA)n Simple_repeat Simple_repeat 2 91 0 289 278 112 45 chr4 63884744 63885208 -138443139 - L1M4 LINE L1 -3211 2935 2441 715 226 17 23 chr4 63885666 63885843 -138442504 + MER5B DNA MER1_type 1 176 -2 446 254 217 26 chr4 63886519 63886708 -138441639 - MIR SINE MIR 0 262 38 1166 186 134 22 chr4 63886820 63887089 -138441258 - AluJo SINE Alu -3 299 1 24 0 0 0 chr4 63887177 63887201 -138441146 + AT_rich Low_complexity Low_complexity 1 24 0 496 314 61 26 chr4 63887452 63887681 -138440666 + MIR SINE MIR 26 262 0 279 0 0 0 chr4 63888871 63888902 -138439445 + (CAGT)n Simple_repeat Simple_repeat 4 34 0 312 324 81 22 chr4 63888903 63889039 -138439308 - L2 LINE L2 -21 3251 3108 1399 210 23 0 chr4 63889105 63889362 -138438985 + Tigger7 DNA MER2_type 1 263 -287 451 224 10 20 chr4 63889370 63889468 -138438879 + Tigger7 DNA MER2_type 2390 2486 -1 2104 122 0 3 chr4 63889531 63889827 -138438520 + AluSg SINE Alu 1 295 -15 180 218 13 90 chr4 63890290 63890368 -138437979 + L2 LINE L2 2549 2620 -694 198 71 0 0 chr4 63890371 63890399 -138437948 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 601 309 16 36 chr4 63890931 63891180 -138437167 - MIR SINE MIR 0 262 19 28 48 0 0 chr4 63891687 63891729 -138436618 + AT_rich Low_complexity Low_complexity 1 42 0 1556 196 9 31 chr4 63891786 63892103 -138436244 + AluJb SINE Alu 3 312 0 22 0 0 0 chr4 63892319 63892341 -138436006 + AT_rich Low_complexity Low_complexity 1 22 0 595 259 27 7 chr4 63892687 63892834 -138435513 + MLT1E LTR MaLR 1 150 -443 470 308 85 51 chr4 63892865 63893042 -138435305 + MLT1E LTR MaLR 289 425 -168 239 189 45 174 chr4 63893421 63893553 -138434794 + MLT1E LTR MaLR 448 562 -33 370 302 200 5 chr4 63893759 63893964 -138434383 - MIR SINE MIR -2 260 16 21 57 0 0 chr4 63894091 63894126 -138434221 + AT_rich Low_complexity Low_complexity 1 35 0 23972 156 13 64 chr4 63894139 63897170 -138431177 + L1PA8 LINE L1 12 2680 -3466 182 62 31 0 chr4 63897170 63897202 -138431145 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 23972 156 13 64 chr4 63897202 63899254 -138429093 + L1PA8 LINE L1 2680 4835 -1311 6801 64 4 9 chr4 63899255 63900327 -138428020 + L1PA8 LINE L1 5091 6158 -14 7199 241 42 39 chr4 63903339 63905278 -138423069 + L1M4 LINE L1 2870 4801 -1345 2217 122 24 27 chr4 63905278 63905654 -138422693 - THE1C LTR MaLR 0 375 1 7199 241 42 39 chr4 63905654 63906017 -138422330 + L1M4 LINE L1 4801 5183 -963 2090 104 17 0 chr4 63906017 63906314 -138422033 + AluY SINE Alu 1 302 -9 7199 241 42 39 chr4 63906314 63906536 -138421811 + L1M4 LINE L1 5183 5403 -743 1727 192 56 101 chr4 63906552 63906699 -138421648 - MER63C DNA MER1_type -463 597 445 1485 116 5 0 chr4 63906699 63906914 -138421433 + L1PA8 LINE L1 5941 6156 -16 1727 192 56 101 chr4 63906914 63907391 -138420956 - MER63C DNA MER1_type -615 445 1 4870 222 94 19 chr4 63907646 63909040 -138419307 - L1MC3 LINE L1 -682 7103 5605 606 235 8 0 chr4 63909194 63909326 -138419021 - L1MCa LINE L1 -4791 1635 1503 * 1514 232 71 33 chr4 63909322 63910004 -138418343 + L1MC/D LINE L1 5066 5768 -743 301 284 14 0 chr4 63910785 63910859 -138417488 + MER21B LTR ERV1 13 87 -776 3391 182 11 42 chr4 63910871 63911679 -138416668 + LTR1 LTR ERV1 3 785 0 2091 256 86 28 chr4 63911755 63912403 -138415944 + MER21B LTR ERV1 124 809 -54 272 236 11 0 chr4 63913045 63913134 -138415213 + (TA)n Simple_repeat Simple_repeat 2 91 0 574 286 214 0 chr4 63915307 63915517 -138412830 - MIR SINE MIR -5 257 3 22 0 0 0 chr4 63916880 63916902 -138411445 + AT_rich Low_complexity Low_complexity 1 22 0 439 281 45 68 chr4 63917222 63917443 -138410904 + MIR SINE MIR 47 262 0 7953 9 0 0 chr4 63917779 63918779 -138409568 - L1HS LINE L1 0 6155 5156 4550 29 0 0 chr4 63918779 63919323 -138409024 + L1HS LINE L1 4607 5150 -996 235 254 0 18 chr4 63920181 63920236 -138408111 + L2 LINE L2 3204 3257 -15 346 245 75 57 chr4 63921792 63921951 -138406396 - L2 LINE L2 -2 3311 3150 24 0 0 0 chr4 63922843 63922867 -138405480 + AT_rich Low_complexity Low_complexity 1 24 0 367 283 31 50 chr4 63924055 63924214 -138404133 + MIR SINE MIR 7 162 -100 624 234 37 118 chr4 63924291 63924589 -138403758 - MLT1D LTR MaLR -158 347 81 1836 175 138 5 chr4 63924589 63924967 -138403380 - MSTA LTR MaLR 0 428 1 624 234 37 118 chr4 63924967 63925023 -138403324 - MLT1D LTR MaLR -424 81 22 259 217 12 36 chr4 63925168 63925251 -138403096 - MIR SINE MIR -63 199 119 478 301 75 57 chr4 63925469 63925855 -138402492 + HAL1 LINE L1 1 393 -2114 1824 177 29 6 chr4 63925925 63926270 -138402077 - MLT1A1 LTR MaLR 0 365 13 451 343 50 47 chr4 63926702 63927239 -138401108 + HAL1 LINE L1 518 1056 -1451 274 194 39 58 chr4 63927506 63927661 -138400686 + (TA)n Simple_repeat Simple_repeat 2 153 0 23 0 0 0 chr4 63927705 63927728 -138400619 + AT_rich Low_complexity Low_complexity 1 23 0 2061 125 10 3 chr4 63928707 63929010 -138399337 + AluSq SINE Alu 3 307 -6 22 35 0 0 chr4 63929233 63929262 -138399085 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 63929341 63929362 -138398985 + AT_rich Low_complexity Low_complexity 1 21 0 1428 135 0 5 chr4 63929775 63929990 -138398357 - AluSg SINE Alu -96 214 1 267 170 80 0 chr4 63930404 63930504 -138397843 + (TA)n Simple_repeat Simple_repeat 1 108 0 526 74 51 34 chr4 63930504 63930680 -138397667 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 40 0 0 0 chr4 63930680 63930720 -138397627 + AT_rich Low_complexity Low_complexity 1 40 0 387 260 65 0 chr4 63930823 63931029 -138397318 + (TA)n Simple_repeat Simple_repeat 1 219 0 26 30 0 0 chr4 63931181 63931214 -138397133 + AT_rich Low_complexity Low_complexity 1 33 0 2305 225 26 76 chr4 63931286 63931372 -138396975 + L1MD2 LINE L1 5505 5594 -765 2173 92 0 20 chr4 63931372 63931675 -138396672 + AluY SINE Alu 1 297 -14 2305 225 26 76 chr4 63931675 63932347 -138396000 + L1MD2 LINE L1 5594 6225 -134 3338 170 15 23 chr4 63932354 63932429 -138395918 - MER6A DNA MER2_type -263 602 528 506 104 13 0 chr4 63932429 63932506 -138395841 + MADE1 DNA Mariner 1 78 -2 3338 170 15 23 chr4 63932506 63933037 -138395310 - MER6A DNA MER2_type -337 528 1 530 182 10 0 chr4 63933041 63933140 -138395207 + L1MD1 LINE L1 6116 6215 -27 21 57 0 0 chr4 63933146 63933181 -138395166 + AT_rich Low_complexity Low_complexity 1 35 0 237 65 0 0 chr4 63933697 63933728 -138394619 + (TG)n Simple_repeat Simple_repeat 1 31 0 539 328 13 46 chr4 63933760 63933998 -138394349 - MIR SINE MIR -30 232 3 21 0 0 0 chr4 63934089 63934110 -138394237 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr4 63934140 63934184 -138394163 + AT_rich Low_complexity Low_complexity 1 44 0 1951 136 20 3 chr4 63934290 63934585 -138393762 - AluSg SINE Alu -10 300 1 751 124 12 11 chr4 63934913 63935031 -138393316 - THE1C LTR MaLR -268 107 2 21 0 0 0 chr4 63936997 63937018 -138391329 + AT_rich Low_complexity Low_complexity 1 21 0 349 278 63 24 chr4 63941204 63941330 -138387017 + L2 LINE L2 3138 3268 -4 1357 211 61 15 chr4 63941699 63942189 -138386158 - Tigger7 DNA MER2_type -1 2486 1 25 51 0 0 chr4 63942447 63942486 -138385861 + AT_rich Low_complexity Low_complexity 1 39 0 231 111 37 19 chr4 63942843 63942897 -138385450 + (TA)n Simple_repeat Simple_repeat 2 56 0 1627 192 7 29 chr4 63942965 63943273 -138385074 + AluSx SINE Alu 3 303 -9 25 0 0 0 chr4 63943292 63943317 -138385030 + AT_rich Low_complexity Low_complexity 1 25 0 1646 282 64 18 chr4 63943868 63944525 -138383822 - L1ME2 LINE L1 -9 6224 5538 322 275 36 42 chr4 63944537 63944704 -138383643 - L1ME2 LINE L1 -903 5312 5147 433 233 71 94 chr4 63944857 63944994 -138383353 - L1ME2 LINE L1 -2899 3316 3177 2408 68 0 0 chr4 63944994 63945290 -138383057 - AluY SINE Alu -15 296 1 433 233 71 94 chr4 63945290 63945504 -138382843 - L1ME2 LINE L1 -3038 3177 2973 755 292 58 18 chr4 63945744 63946357 -138381990 - L1ME2 LINE L1 -3615 2600 2002 23 33 0 0 chr4 63946445 63946475 -138381872 + AT_rich Low_complexity Low_complexity 1 30 0 2249 110 3 0 chr4 63946623 63946933 -138381414 - AluY SINE Alu 0 311 1 1785 275 14 23 chr4 63947859 63948372 -138379975 + MER74B LTR ERVL 58 565 -57 1473 239 97 44 chr4 63949648 63950259 -138378088 + LTR48B LTR ERV1 1 643 -1 2722 220 55 41 chr4 63950395 63951230 -138377117 + L1MC3 LINE L1 6937 7783 -2 522 248 0 8 chr4 63951602 63951719 -138376628 + FLAM_A SINE Alu 1 116 -26 183 42 0 0 chr4 63951724 63951748 -138376599 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 312 320 17 67 chr4 63951991 63952169 -138376178 - MLT1H LTR MaLR -255 294 126 22 56 0 0 chr4 63953335 63953371 -138374976 + AT_rich Low_complexity Low_complexity 1 36 0 443 273 27 13 chr4 63954490 63954640 -138373707 + MLT1K LTR MaLR 435 586 -2 22 56 0 0 chr4 63954841 63954877 -138373470 + AT_rich Low_complexity Low_complexity 1 36 0 195 129 0 0 chr4 63956016 63956047 -138372300 + (TATG)n Simple_repeat Simple_repeat 2 32 0 22 56 0 0 chr4 63956894 63956930 -138371417 + AT_rich Low_complexity Low_complexity 1 36 0 294 242 85 85 chr4 63957890 63958055 -138370292 + MLT1H LTR MaLR 126 290 -259 4741 107 10 0 chr4 63958146 63958830 -138369517 - L1PA7 LINE L1 -12 6142 5452 30327 124 20 19 chr4 63958930 63964279 -138364068 - L1P3 LINE L1 -646 5823 407 315 0 0 0 chr4 63964279 63964314 -138364033 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 30327 124 20 19 chr4 63964314 63964718 -138363629 - L1P3 LINE L1 -6062 407 5 407 229 62 0 chr4 63964820 63964916 -138363431 + MLT1H LTR MaLR 448 549 0 30933 113 30 10 chr4 63965161 63969981 -138358366 + L1PA6 LINE L1 11 4926 -1220 3688 74 2 0 chr4 63969981 63970450 -138357897 + L1PA6 LINE L1 5667 6152 -2 32 67 0 0 chr4 63971542 63971602 -138356745 + AT_rich Low_complexity Low_complexity 1 60 0 28 0 0 0 chr4 63972881 63972909 -138355438 + AT_rich Low_complexity Low_complexity 1 28 0 6314 260 83 29 chr4 63973026 63977019 -138351328 + L1MCb LINE L1 1 3775 -2789 625 72 0 136 chr4 63977019 63977144 -138351203 + L1MA3 LINE L1 6198 6305 0 6314 260 83 29 chr4 63977144 63977632 -138350715 + L1MCb LINE L1 3775 4235 -2329 2782 12 0 16 chr4 63977632 63977951 -138350396 + AluYb8 SINE Alu 1 314 -4 6314 260 83 29 chr4 63977951 63978260 -138350087 + L1MCb LINE L1 4235 5138 -1426 846 176 0 34 chr4 63978263 63978439 -138349908 - L1MC1 LINE L1 0 6333 6164 723 116 9 18 chr4 63979499 63979610 -138348737 - MLT1B LTR MaLR 0 467 358 1749 231 60 2 chr4 63979610 63980008 -138348339 - MSTB1 LTR MaLR 0 432 12 1131 251 6 14 chr4 63980025 63980335 -138348012 - MLT1B LTR MaLR -104 363 4 323 245 11 11 chr4 63980797 63980891 -138347456 + L1MEc LINE L1 778 871 -6251 2094 217 57 12 chr4 63980927 63981490 -138346857 + L1MB7 LINE L1 5382 5969 -215 3827 186 29 151 chr4 63981499 63982765 -138345582 - MER52A LTR ERV1 0 1755 644 636 135 31 6 chr4 63982818 63982981 -138345366 + (TA)n Simple_repeat Simple_repeat 2 168 0 203 0 37 0 chr4 63983061 63983088 -138345259 + (TA)n Simple_repeat Simple_repeat 1 28 0 348 268 70 60 chr4 63983151 63983536 -138344811 + L1MEc LINE L1 37 425 -5998 339 357 39 22 chr4 63983880 63984062 -138344285 + L1MEc LINE L1 992 1176 -5246 604 69 11 0 chr4 63984101 63984188 -138344159 + L1PA7 LINE L1 6066 6153 -1 1735 174 19 10 chr4 63984261 63984571 -138343776 + MLT1A1 LTR MaLR 1 313 -52 648 271 94 27 chr4 63984590 63984918 -138343429 + L1MEc LINE L1 1068 1417 -5006 860 267 219 24 chr4 63984970 63985635 -138342712 + L1ME2 LINE L1 5351 6143 -21 463 341 51 0 chr4 63986342 63986518 -138341829 + MIR SINE MIR 12 196 -66 279 0 0 0 chr4 63987477 63987508 -138340839 + (TG)n Simple_repeat Simple_repeat 1 31 0 27 49 0 0 chr4 63989471 63989512 -138338835 + AT_rich Low_complexity Low_complexity 1 41 0 2087 118 7 0 chr4 63989956 63990253 -138338094 - AluSx SINE Alu -13 299 1 305 238 53 117 chr4 63990363 63990569 -138337778 + L1ME4a LINE L1 5924 6116 -5 1563 92 0 0 chr4 63991341 63991559 -138336788 - L1PA8 LINE L1 0 6172 5955 249 57 0 0 chr4 63991560 63991595 -138336752 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 1971 104 22 0 chr4 63991595 63991864 -138336483 - AluSx SINE Alu -31 281 7 229 370 40 20 chr4 63992308 63992408 -138335939 + L2 LINE L2 3117 3218 -54 195 100 0 0 chr4 63992573 63992603 -138335744 + (A)n Simple_repeat Simple_repeat 1 30 0 24 32 0 0 chr4 63992691 63992722 -138335625 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 63993273 63993296 -138335051 + AT_rich Low_complexity Low_complexity 1 23 0 3634 58 2 0 chr4 63994273 63994735 -138333612 + L1PA7 LINE L1 5692 6154 0 32 26 0 0 chr4 63994796 63994835 -138333512 + AT_rich Low_complexity Low_complexity 1 39 0 5982 195 60 7 chr4 63994952 63997348 -138330999 + L1M1 LINE L1 7 6884 -743 24 100 0 0 chr4 63997753 63997833 -138330514 + AT_rich Low_complexity Low_complexity 1 80 0 8309 193 9 28 chr4 63997983 63999819 -138328528 + L1PA14 LINE L1 3494 5294 -867 2285 62 0 0 chr4 63999819 64000093 -138328254 + AluY SINE Alu 22 295 -16 8309 193 9 28 chr4 64000093 64000945 -138327402 + L1PA14 LINE L1 5294 6161 0 317 285 34 22 chr4 64001261 64001440 -138326907 - L1ME LINE L1 -349 5772 5592 298 16 32 48 chr4 64002246 64002308 -138326039 + (TTA)n Simple_repeat Simple_repeat 2 62 0 1381 226 0 21 chr4 64002318 64002605 -138325742 - AluJb SINE Alu -30 282 2 189 314 96 32 chr4 64002801 64002989 -138325358 + MIR SINE MIR 51 250 -12 21 0 0 0 chr4 64003979 64004000 -138324347 + AT_rich Low_complexity Low_complexity 1 21 0 252 261 33 169 chr4 64004215 64004399 -138323948 - L2 LINE L2 -2 3270 3112 325 300 0 28 chr4 64004869 64005022 -138323325 + MLT1G LTR MaLR 216 386 -169 32 57 0 0 chr4 64005096 64005149 -138323198 + AT_rich Low_complexity Low_complexity 1 53 0 238 211 0 0 chr4 64005300 64005352 -138322995 + (TATAA)n Simple_repeat Simple_repeat 5 56 0 29 84 0 0 chr4 64006130 64006201 -138322146 + AT_rich Low_complexity Low_complexity 1 71 0 1651 264 65 67 chr4 64007308 64007894 -138320453 + MLT1E LTR MaLR 3 587 -6 377 193 61 9 chr4 64007921 64008035 -138320312 - MER3 DNA MER1_type 0 2624 2505 210 204 28 46 chr4 64008040 64008148 -138320199 + (TTATA)n Simple_repeat Simple_repeat 5 110 0 207 219 57 16 chr4 64008109 64008232 -138320115 + (TA)n Simple_repeat Simple_repeat 2 129 0 * 800 230 57 0 chr4 64008233 64008481 -138319866 - MER3 DNA MER1_type 0 2517 2256 491 148 37 89 chr4 64008500 64008635 -138319712 - MER3 DNA MER1_type -41 168 41 194 349 8 48 chr4 64008690 64008816 -138319531 - MER5A DNA MER1_type 0 189 69 216 371 104 39 chr4 64009154 64009672 -138318675 + L2 LINE L2 2030 2581 -733 233 208 83 28 chr4 64009907 64009979 -138318368 + L2 LINE L2 3219 3294 -19 463 315 43 49 chr4 64010270 64010454 -138317893 + MIR3 SINE MIR 1 183 -25 22 0 0 0 chr4 64010806 64010828 -138317519 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr4 64011670 64011699 -138316648 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 24 96 0 0 chr4 64012323 64012396 -138315951 + AT_rich Low_complexity Low_complexity 1 73 0 35 95 0 0 chr4 64012474 64012579 -138315768 + AT_rich Low_complexity Low_complexity 1 105 0 22 0 0 0 chr4 64012818 64012840 -138315507 + AT_rich Low_complexity Low_complexity 1 22 0 1937 95 8 0 chr4 64013373 64013637 -138314710 + AluY SINE Alu 1 266 -45 2164 76 4 0 chr4 64214043 64214320 -138114027 - AluSp SINE Alu -1 312 35 727 167 0 24 chr4 64214990 64215443 -138112904 + (CATTC)n Satellite Satellite 1 442 0 709 177 2 2 chr4 64215492 64215998 -138112349 + (CATTC)n Satellite Satellite 1 506 0 302 193 0 12 chr4 64216042 64216125 -138112222 + (CATTC)n Satellite Satellite 4 85 0 10795 106 5 5 chr4 64216252 64217869 -138110478 - L1P LINE L1 -1369 4777 3161 225 65 0 0 chr4 64220596 64220627 -138107720 + (T)n Simple_repeat Simple_repeat 1 31 0 1080 160 89 5 chr4 64221343 64221556 -138106791 + L1PA13 LINE L1 5930 6160 -3 1116 229 39 82 chr4 64221612 64222001 -138106346 + MLT1A2 LTR MaLR 3 374 0 1246 261 42 37 chr4 64222075 64222108 -138106239 + MER21-int LTR ERV1 1218 1249 -5509 1925 164 43 66 chr4 64222108 64222546 -138105801 - MSTB1 LTR MaLR 0 432 5 1246 261 42 37 chr4 64222546 64223024 -138105323 + MER21-int LTR ERV1 1249 4533 -2225 1864 153 10 7 chr4 64223193 64223493 -138104854 - AluJo SINE Alu 0 312 12 569 291 13 13 chr4 64223505 64223663 -138104684 + MER21-int LTR ERV1 1714 1871 -2320 180 0 0 0 chr4 64223974 64223994 -138104353 + (CAA)n Simple_repeat Simple_repeat 2 21 0 701 241 35 82 chr4 64224602 64224884 -138103463 + MER21-int LTR ERV1 1943 2211 -1980 1310 203 49 11 chr4 64225075 64225361 -138102986 - MSTB1 LTR MaLR -17 415 119 450 281 35 0 chr4 64225505 64225619 -138102728 + MER21-int LTR ERV1 3452 3569 -622 2213 107 3 7 chr4 64226965 64227274 -138101073 - AluSp SINE Alu -5 308 1 899 211 81 81 chr4 64227449 64227734 -138100613 + MER77 LTR ERV1 1 285 -320 692 266 58 0 chr4 64227730 64227918 -138100429 + MER77 LTR ERV1 407 605 0 * 299 279 0 0 chr4 64227919 64227998 -138100349 + L1MB8 LINE L1 4786 4864 -1282 360 217 54 0 chr4 64228099 64228191 -138100156 + L1MB8 LINE L1 5388 5484 -700 2946 209 36 12 chr4 64228258 64228923 -138099424 + L1MB8 LINE L1 5493 6173 -5 1631 188 42 15 chr4 64228988 64229318 -138099029 - MER44D DNA MER2_type 0 609 1 320 371 26 60 chr4 64229571 64229803 -138098544 - L2 LINE L2 -531 2783 2560 464 171 12 22 chr4 64230683 64230868 -138097479 - MLT1B LTR MaLR -132 258 1 197 300 29 0 chr4 64231117 64231187 -138097160 + MIR3 SINE MIR 87 158 -50 242 313 17 43 chr4 64231318 64231433 -138096914 + MIR SINE MIR 35 146 -62 278 250 167 0 chr4 64231529 64231613 -138096734 - MIR SINE MIR -8 254 157 1995 125 4 7 chr4 64231637 64231918 -138096429 - AluSq SINE Alu -33 280 1 2155 88 0 3 chr4 64232055 64232383 -138095964 - AluY SINE Alu 0 327 1 22 35 0 0 chr4 64233086 64233115 -138095232 + AT_rich Low_complexity Low_complexity 1 29 0 1586 209 47 6 chr4 64233997 64234360 -138093987 + L1MD1 LINE L1 15 392 -6148 1063 226 151 56 chr4 64234422 64234799 -138093548 + MLT2B1 LTR ERVL 2 414 -106 838 227 6 0 chr4 64234804 64234967 -138093380 + MER8 DNA MER2_type 1 164 -75 428 197 13 0 chr4 64235009 64235085 -138093262 + MER8 DNA MER2_type 163 239 0 314 164 0 0 chr4 64235115 64235170 -138093177 + MLT2B1 LTR ERVL 464 518 -2 2943 249 82 39 chr4 64235190 64236220 -138092127 + L1MD1 LINE L1 487 1561 -4979 2232 277 20 76 chr4 64236228 64236842 -138091505 + L1MD1 LINE L1 1799 2347 -4193 1433 258 14 14 chr4 64236842 64237207 -138091140 + MLT1A1 LTR MaLR 1 365 0 2232 277 20 76 chr4 64237207 64237495 -138090852 + L1MD1 LINE L1 2347 2650 -3890 1022 77 25 6 chr4 64237490 64237656 -138090691 - L1PA8 LINE L1 -388 5768 5597 * 2880 79 0 35 chr4 64237656 64237726 -138090621 + L1PA8 LINE L1 5757 5828 -344 2414 83 0 3 chr4 64237726 64238038 -138090309 + AluY SINE Alu 1 311 0 2880 79 0 35 chr4 64238038 64238395 -138089952 + L1PA8 LINE L1 5828 6172 0 5555 175 80 16 chr4 64238395 64239535 -138088812 - Tigger3b DNA MER2_type -16 1215 3 1328 266 77 14 chr4 64239554 64240126 -138088221 + L1MD1 LINE L1 2662 3269 -3271 332 302 166 19 chr4 64240315 64240520 -138087827 + MIR SINE MIR 28 262 0 257 267 156 69 chr4 64240942 64241230 -138087117 - MLT1L LTR MaLR -302 313 1 674 291 21 42 chr4 64242050 64242339 -138086008 - HERVL LTR ERVL -3393 2261 1979 18061 39 1 1 chr4 64243812 64246803 -138081544 - L1PA4 LINE L1 0 6155 3165 582 317 168 20 chr4 64246837 64247140 -138081207 - LTR16C LTR ERVL -10 481 134 1951 162 0 0 chr4 64247633 64247936 -138080411 + AluSx SINE Alu 1 303 -9 234 105 0 0 chr4 64248161 64248199 -138080148 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1325 207 52 0 chr4 64248201 64248471 -138079876 - AluJb SINE Alu -28 284 1 23 0 0 0 chr4 64248693 64248716 -138079631 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 64249073 64249097 -138079250 + AT_rich Low_complexity Low_complexity 1 24 0 1406 240 42 26 chr4 64249097 64250088 -138078259 - L1MA9 LINE L1 -38 6274 5070 2824 243 64 36 chr4 64250188 64250250 -138078097 + L1MD1 LINE L1 3338 3397 -3143 558 173 27 0 chr4 64250250 64250360 -138077987 - L1PA16 LINE L1 -5 6161 6049 2824 243 64 36 chr4 64250360 64250569 -138077778 + L1MD1 LINE L1 3397 3599 -2941 324 0 0 0 chr4 64250569 64250605 -138077742 + (CA)n Simple_repeat Simple_repeat 2 37 0 2824 243 64 36 chr4 64250605 64251461 -138076886 + L1MD1 LINE L1 3599 4503 -2037 1527 169 49 75 chr4 64251461 64251846 -138076501 - THE1C LTR MaLR 0 375 1 2824 243 64 36 chr4 64251846 64251888 -138076459 + L1MD1 LINE L1 4503 4542 -1998 936 192 71 18 chr4 64251898 64252122 -138076225 - Tigger2 DNA MER2_type 0 2718 2483 1907 160 22 31 chr4 64252124 64252742 -138075605 + L1P4 LINE L1 4915 5514 -649 2876 207 113 29 chr4 64252766 64253459 -138074888 + L1MD1 LINE L1 5472 6265 -371 1510 223 22 16 chr4 64253459 64253822 -138074525 - MLT1A1 LTR MaLR 0 365 1 2876 207 113 29 chr4 64253822 64254119 -138074228 + L1MD1 LINE L1 6265 6536 -100 26 88 0 0 chr4 64254141 64254209 -138074138 + AT_rich Low_complexity Low_complexity 1 68 0 302 296 9 43 chr4 64254886 64255001 -138073346 - L1MC4 LINE L1 -1342 6700 6590 331 301 96 30 chr4 64256050 64256216 -138072131 + MIR3 SINE MIR 22 198 -10 211 211 0 0 chr4 64258158 64258196 -138070151 - MIR SINE MIR -113 149 112 450 183 15 8 chr4 64258490 64258621 -138069726 + GA-rich Low_complexity Low_complexity 1 132 0 832 281 29 36 chr4 64259133 64259411 -138068936 + MER93b LTR ERV1 98 373 0 22 0 0 0 chr4 64259799 64259821 -138068526 + AT_rich Low_complexity Low_complexity 1 22 0 214 77 0 77 chr4 64260366 64260405 -138067942 + (TC)n Simple_repeat Simple_repeat 2 37 0 261 57 0 0 chr4 64260405 64260440 -138067907 + (CA)n Simple_repeat Simple_repeat 1 35 0 24 32 0 0 chr4 64260674 64260705 -138067642 + AT_rich Low_complexity Low_complexity 1 31 0 195 69 0 0 chr4 64260953 64260982 -138067365 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 198 0 0 0 chr4 64260993 64261015 -138067332 + (TTA)n Simple_repeat Simple_repeat 3 24 0 352 44 0 0 chr4 64261015 64261060 -138067287 - L1PA3 LINE L1 -18 6137 6093 32 0 0 0 chr4 64261060 64261092 -138067255 + AT_rich Low_complexity Low_complexity 1 32 0 188 309 29 15 chr4 64261194 64261262 -138067085 + L2 LINE L2 3229 3297 -16 1792 143 60 33 chr4 64261810 64262175 -138066172 + THE1C LTR MaLR 1 375 0 9058 146 30 40 chr4 64262175 64263770 -138064577 + THE1C-int LTR MaLR 1 1580 0 1768 143 79 25 chr4 64263770 64264126 -138064221 + THE1C LTR MaLR 1 375 0 186 143 0 0 chr4 64264887 64264922 -138063425 + (TA)n Simple_repeat Simple_repeat 1 35 0 245 229 119 46 chr4 64264976 64265085 -138063262 - L1ME LINE L1 -502 5619 5503 1956 159 3 0 chr4 64265597 64265906 -138062441 + AluSx SINE Alu 1 310 -2 399 312 156 25 chr4 64265917 64266282 -138062065 - L1ME LINE L1 -1236 4910 4498 2377 56 0 56 chr4 64266578 64266902 -138061445 - AluY SINE Alu -5 306 1 314 310 49 39 chr4 64267009 64267212 -138061135 - L1ME LINE L1 -2040 4106 3902 1959 108 0 0 chr4 64267418 64267678 -138060669 - AluSg SINE Alu -12 298 39 300 325 40 24 chr4 64268012 64268138 -138060209 - MLT1L LTR MaLR -87 528 401 578 143 193 37 chr4 64268141 64268302 -138060045 - MER5A DNA MER1_type 0 189 4 301 320 93 27 chr4 64268428 64268653 -138059694 - MLT1L LTR MaLR -346 269 30 566 195 59 0 chr4 64269113 64269231 -138059116 + AluJb SINE Alu 174 298 -14 26 0 0 0 chr4 64269384 64269410 -138058937 + AT_rich Low_complexity Low_complexity 1 26 0 308 342 21 31 chr4 64269532 64269725 -138058622 - HAL1 LINE L1 -817 1690 1500 1694 197 3 3 chr4 64270976 64271285 -138057062 - AluJb SINE Alu -2 310 2 28 0 0 0 chr4 64271289 64271317 -138057030 + AT_rich Low_complexity Low_complexity 1 28 0 377 274 67 15 chr4 64271317 64271452 -138056895 - MIR SINE MIR -56 206 65 26 0 0 0 chr4 64271953 64271979 -138056368 + AT_rich Low_complexity Low_complexity 1 26 0 362 378 13 0 chr4 64272522 64272673 -138055674 + MIR SINE MIR 50 202 -60 693 259 0 0 chr4 64275214 64275376 -138052971 - FAM SINE Alu -13 162 1 28 0 0 0 chr4 64275565 64275593 -138052754 + AT_rich Low_complexity Low_complexity 1 28 0 194 374 97 28 chr4 64275608 64275969 -138052378 - L2 LINE L2 -517 2797 2412 1337 262 81 32 chr4 64276223 64277509 -138050838 + L1MEc LINE L1 49 1467 -4929 285 135 0 0 chr4 64278666 64278718 -138049629 + (GGA)n Simple_repeat Simple_repeat 3 54 0 23 0 0 0 chr4 64280474 64280497 -138047850 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 64281026 64281047 -138047300 + AT_rich Low_complexity Low_complexity 1 21 0 2122 166 46 3 chr4 64281102 64281451 -138046896 + THE1B LTR MaLR 1 364 0 11513 96 4 4 chr4 64281451 64281499 -138046848 + THE1B-int LTR MaLR 1 48 -1532 1765 138 0 14 chr4 64281499 64281775 -138046572 + AluSc SINE Alu 36 307 -2 11513 96 4 4 chr4 64281775 64283306 -138045041 + THE1B-int LTR MaLR 47 1580 0 2193 150 28 19 chr4 64283308 64283667 -138044680 + THE1B LTR MaLR 3 364 0 207 69 0 0 chr4 64284089 64284118 -138044229 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 420 261 50 0 chr4 64285361 64285480 -138042867 + L1MC/D LINE L1 5589 5713 -2095 3501 215 42 20 chr4 64285500 64287113 -138041234 - L1MB3 LINE L1 -8 6175 4529 1719 232 16 16 chr4 64287108 64287548 -138040799 + L1 LINE L1 4172 4611 -1535 * 2591 134 4 67 chr4 64287810 64288318 -138040029 + L1PB4 LINE L1 5679 6154 -2 1960 133 0 0 chr4 64288341 64288660 -138039687 + AluSq SINE Alu 1 319 0 23 0 0 0 chr4 64288708 64288731 -138039616 + AT_rich Low_complexity Low_complexity 1 23 0 315 279 87 19 chr4 64288782 64288886 -138039461 - L2 LINE L2 -4 3309 3199 231 271 21 0 chr4 64289025 64289073 -138039274 - L2 LINE L2 -557 2757 2709 2331 86 0 0 chr4 64289075 64289377 -138038970 - AluSg SINE Alu -8 302 1 252 383 25 0 chr4 64290071 64290191 -138038156 + MIR3 SINE MIR 53 175 -33 804 226 0 0 chr4 64290192 64290347 -138038000 - AluSg/x SINE Alu -12 298 144 720 192 50 16 chr4 64290641 64290823 -138037524 - MER53 DNA DNA -1 188 1 246 128 0 0 chr4 64291475 64291514 -138036833 + (A)n Simple_repeat Simple_repeat 1 39 0 1638 108 0 0 chr4 64291953 64292185 -138036162 - AluY SINE Alu -3 308 77 23 0 0 0 chr4 64294054 64294077 -138034270 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 64294141 64294165 -138034182 + AT_rich Low_complexity Low_complexity 1 24 0 22 70 0 0 chr4 64294854 64294897 -138033450 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 64296340 64296362 -138031985 + AT_rich Low_complexity Low_complexity 1 22 0 209 192 19 39 chr4 64296604 64296656 -138031691 + CT-rich Low_complexity Low_complexity 5 55 0 1613 171 3 37 chr4 64296988 64297309 -138031038 - AluSx SINE Alu -2 310 1 270 81 0 0 chr4 64297755 64297792 -138030555 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 192 40 0 0 chr4 64297791 64297816 -138030531 + (TTA)n Simple_repeat Simple_repeat 3 27 0 * 3297 63 0 0 chr4 64297816 64298243 -138030104 - L1PA7 LINE L1 -18 6136 5710 477 148 0 0 chr4 64298269 64298350 -138029997 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 1229 164 238 0 chr4 64298356 64298600 -138029747 - AluSx SINE Alu 0 302 1 440 179 110 14 chr4 64300059 64300204 -138028143 + L1ME1 LINE L1 1832 1990 -4406 25 65 0 0 chr4 64300265 64300311 -138028036 + AT_rich Low_complexity Low_complexity 1 46 0 234 295 0 0 chr4 64301051 64301112 -138027235 + (TA)n Simple_repeat Simple_repeat 2 62 0 2191 119 0 0 chr4 64301656 64301959 -138026388 - AluSg SINE Alu -7 303 1 25 31 0 0 chr4 64302804 64302836 -138025511 + AT_rich Low_complexity Low_complexity 1 32 0 656 247 72 47 chr4 64303145 64303338 -138025009 + L1ME1 LINE L1 2057 2244 -4152 11611 58 66 0 chr4 64303338 64305575 -138022772 + L1PA5 LINE L1 3881 6165 0 656 247 72 47 chr4 64305575 64305785 -138022562 + L1ME1 LINE L1 2244 2471 -3925 970 168 37 31 chr4 64305808 64305999 -138022348 - AluJb SINE Alu -1 311 120 593 199 8 0 chr4 64306006 64306137 -138022210 + CT-rich Low_complexity Low_complexity 1 132 0 346 202 88 9 chr4 64306173 64306287 -138022060 + L1ME1 LINE L1 3881 4003 -2212 1072 271 59 42 chr4 64306296 64306698 -138021649 + L1ME1 LINE L1 4968 5362 -873 2169 132 3 0 chr4 64306698 64307009 -138021338 + AluSx SINE Alu 1 312 0 1072 271 59 42 chr4 64307009 64307638 -138020709 + L1ME1 LINE L1 5362 6207 -28 27 49 0 0 chr4 64308112 64308153 -138020194 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr4 64308384 64308407 -138019940 + AT_rich Low_complexity Low_complexity 1 23 0 4470 246 32 25 chr4 64308746 64310274 -138018073 - L1M2 LINE L1 -1713 5852 4314 * 4545 43 11 0 chr4 64310271 64311190 -138017157 - L1PA4 LINE L1 -416 5739 4814 3503 33 0 0 chr4 64311190 64311637 -138016710 + L1PA4 LINE L1 5722 6168 0 2275 263 38 35 chr4 64311638 64312913 -138015434 - L1 LINE L1 -3240 4325 3045 3912 248 53 21 chr4 64313239 64313864 -138014483 - L1M2 LINE L1 -4181 3385 2781 2777 10 0 0 chr4 64313864 64314170 -138014177 + AluYa5 SINE Alu 1 306 -5 3912 248 53 21 chr4 64314170 64314761 -138013586 - L1M2 LINE L1 -4785 2781 2131 1847 314 32 18 chr4 64315208 64315870 -138012477 - L1M2 LINE L1 -6485 1081 411 279 345 12 0 chr4 64317315 64317399 -138010948 - L2 LINE L2 -9 3263 3179 9334 190 13 10 chr4 64317404 64319165 -138009182 + Tigger1 DNA MER2_type 24 1789 -629 1921 183 22 11 chr4 64319636 64320007 -138008340 - THE1C LTR MaLR 0 375 1 9814 126 41 7 chr4 64320007 64321535 -138006812 - THE1C-int LTR MaLR 0 1580 1 2305 124 41 6 chr4 64321535 64321897 -138006450 - THE1C LTR MaLR 0 375 1 21 82 0 0 chr4 64322440 64322489 -138005858 + AT_rich Low_complexity Low_complexity 1 49 0 271 393 74 0 chr4 64323779 64323914 -138004433 - MER91A DNA MER1_type -21 175 31 22 56 0 0 chr4 64324632 64324668 -138003679 + AT_rich Low_complexity Low_complexity 1 36 0 2448 43 3 20 chr4 64325685 64325986 -138002361 + AluY SINE Alu 1 296 -15 526 222 0 0 chr4 64326089 64326188 -138002159 + Tigger1 DNA MER2_type 2320 2418 0 7596 105 7 16 chr4 64326266 64327427 -138000920 - L1P LINE L1 -1562 4584 3434 2766 69 3 11 chr4 64327430 64327819 -138000528 + L1PA8 LINE L1 5794 6179 0 22 88 0 0 chr4 64328215 64328272 -138000075 + AT_rich Low_complexity Low_complexity 1 57 0 975 216 0 20 chr4 64328894 64329093 -137999254 + AluJb SINE Alu 88 282 -30 189 0 0 0 chr4 64329096 64329117 -137999230 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1021 290 37 43 chr4 64329472 64329827 -137998520 - MLT1G LTR MaLR 0 590 200 2212 94 3 3 chr4 64329827 64330125 -137998222 - AluSc SINE Alu -11 298 1 1021 290 37 43 chr4 64330125 64330303 -137998044 - MLT1G LTR MaLR -390 200 22 183 188 0 0 chr4 64330364 64330412 -137997935 + (TA)n Simple_repeat Simple_repeat 2 49 0 190 353 134 38 chr4 64330719 64331084 -137997263 - L2 LINE L2 -572 2742 2343 569 218 11 23 chr4 64331611 64331762 -137996585 + L1MA9 LINE L1 6123 6268 -36 330 273 0 13 chr4 64331762 64331839 -137996508 - Tigger5 DNA MER2_type 0 2323 2248 330 222 16 0 chr4 64331838 64331901 -137996446 + Tigger5 DNA MER2_type 2257 2320 -3 * 350 228 13 13 chr4 64331901 64331979 -137996368 - Tigger5 DNA MER2_type -2245 78 1 1555 96 5 0 chr4 64332411 64332630 -137995717 + L1P4 LINE L1 5390 5609 -554 1860 153 33 55 chr4 64332992 64333391 -137994956 + MLT1B LTR MaLR 1 390 0 1780 168 73 52 chr4 64333637 64334137 -137994210 - MER51B LTR ERV1 0 607 63 2763 123 12 2 chr4 64334400 64334824 -137993523 - MSTA LTR MaLR 0 428 1 2249 98 0 0 chr4 64336009 64336296 -137992051 - AluSc SINE Alu -22 287 1 1774 161 18 7 chr4 64337123 64337408 -137990939 + AluSx SINE Alu 9 296 -16 2378 118 5 27 chr4 64337413 64337785 -137990562 + THE1B LTR MaLR 1 364 0 403 85 0 0 chr4 64338023 64338082 -137990265 - L1PB3 LINE L1 -3 6151 6093 1615 203 0 13 chr4 64338463 64338778 -137989569 - AluJb SINE Alu -1 311 1 21 71 0 0 chr4 64338785 64338827 -137989520 + AT_rich Low_complexity Low_complexity 1 42 0 396 354 66 0 chr4 64339462 64339643 -137988704 - L2 LINE L2 -552 2762 2570 216 0 0 0 chr4 64339643 64339667 -137988680 + (A)n Simple_repeat Simple_repeat 1 24 0 2204 94 0 29 chr4 64339760 64340067 -137988280 + AluY SINE Alu 1 298 -13 293 288 144 0 chr4 64340067 64340185 -137988162 - L2 LINE L2 -1 3312 3178 243 0 0 0 chr4 64340370 64340397 -137987950 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 396 324 27 14 chr4 64340928 64341076 -137987271 + MLT1K LTR MaLR 72 221 -367 240 231 31 0 chr4 64341071 64341136 -137987211 + MLT1K LTR MaLR 386 452 -136 * 251 318 62 16 chr4 64341157 64341286 -137987061 + L2 LINE L2 3178 3312 -1 306 323 103 15 chr4 64341670 64341865 -137986482 - L2 LINE L2 -892 2422 2211 2103 144 0 0 chr4 64341965 64342270 -137986077 + AluSc SINE Alu 1 305 -4 361 310 0 44 chr4 64342397 64342510 -137985837 - L2 LINE L2 -9 3304 3197 253 159 0 0 chr4 64343489 64343533 -137984814 + LTR16C LTR ERVL 423 466 -25 195 353 115 7 chr4 64343601 64343740 -137984607 + MIR SINE MIR 39 192 -70 258 339 128 9 chr4 64344538 64344647 -137983700 - L2 LINE L2 -3 3269 3148 2390 74 3 3 chr4 64345412 64345723 -137982624 + AluY SINE Alu 1 311 0 1285 229 3 3 chr4 64346197 64346485 -137981862 + AluJo SINE Alu 23 310 -2 215 103 26 0 chr4 64346860 64346899 -137981448 + (ATG)n Simple_repeat Simple_repeat 3 42 0 275 320 24 0 chr4 64347319 64347444 -137980903 - MER41B LTR ERV1 -210 425 298 1998 120 13 3 chr4 64347938 64348237 -137980110 + AluSg SINE Alu 1 302 -8 1325 218 31 7 chr4 64348840 64349129 -137979218 + AluJo SINE Alu 1 296 -16 198 208 0 0 chr4 64349145 64349193 -137979154 + (TA)n Simple_repeat Simple_repeat 2 49 0 339 217 0 14 chr4 64349243 64349312 -137979035 - L2 LINE L2 -4 3309 3242 1613 127 27 4 chr4 64349380 64349639 -137978708 + Tigger2 DNA MER2_type 2453 2717 -1 375 200 0 13 chr4 64349664 64349739 -137978608 + MER31B LTR ERV1 288 361 -105 1451 218 72 50 chr4 64350348 64350751 -137977596 - MER31B LTR ERV1 -40 426 15 448 305 175 37 chr4 64350818 64351052 -137977295 - L2 LINE L2 0 3313 3113 3428 34 2 0 chr4 64351052 64351464 -137976883 - L1PA4 LINE L1 0 6155 5743 448 305 175 37 chr4 64351464 64351583 -137976764 - L2 LINE L2 -200 3113 2911 790 317 59 22 chr4 64351588 64352088 -137976259 + L2 LINE L2 2624 3136 -177 1635 145 20 75 chr4 64352108 64352314 -137976033 + MER44D DNA MER2_type 2 218 -2273 1991 154 82 30 chr4 64352314 64352717 -137975630 + MSTA LTR MaLR 1 424 -4 1635 145 20 75 chr4 64352717 64352868 -137975479 + MER44D DNA MER2_type 218 609 0 314 321 44 25 chr4 64352869 64353028 -137975319 + L2 LINE L2 3148 3309 -4 23 33 0 0 chr4 64353211 64353241 -137975106 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 64353875 64353898 -137974449 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 64355080 64355104 -137973243 + AT_rich Low_complexity Low_complexity 1 24 0 1591 197 38 87 chr4 64355433 64355906 -137972441 - MLT1C LTR MaLR -17 450 1 6179 105 20 0 chr4 64356691 64357694 -137970653 - L1PA7 LINE L1 0 6154 5145 16655 150 18 98 chr4 64357794 64361647 -137966700 - L1PA7 LINE L1 -2597 3549 2 499 208 16 8 chr4 64361813 64361938 -137966409 - L1MC3 LINE L1 -7 7778 7653 1435 202 39 60 chr4 64361991 64362406 -137965941 - L1MC3 LINE L1 -249 7536 7131 * 2434 242 92 26 chr4 64362405 64363531 -137964816 - L1MCb LINE L1 -4559 2087 724 269 266 16 0 chr4 64364010 64364074 -137964273 + GA-rich Low_complexity Low_complexity 3 67 0 3902 160 14 43 chr4 64364566 64365291 -137963056 + MER50 LTR ERV1 1 704 -30 1002 127 0 0 chr4 64365291 64365449 -137962898 + (GGAA)n Simple_repeat Simple_repeat 3 160 0 1377 61 0 0 chr4 64365449 64365629 -137962718 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 726 96 0 0 chr4 64365632 64365736 -137962611 + (GGAA)n Simple_repeat Simple_repeat 4 107 0 22 0 0 0 chr4 64366514 64366536 -137961811 + AT_rich Low_complexity Low_complexity 1 22 0 212 209 0 0 chr4 64367292 64367335 -137961012 - L2 LINE L2 -8 3305 3263 237 261 78 72 chr4 64367593 64367746 -137960601 - L2 LINE L2 -2 3311 3158 621 264 0 0 chr4 64368212 64368341 -137960006 + FAM SINE Alu 24 152 -33 217 385 0 10 chr4 64368697 64368793 -137959554 - L2 LINE L2 -193 3079 2985 214 380 28 0 chr4 64368886 64368994 -137959353 - L2 LINE L2 -473 2841 2731 23 0 0 0 chr4 64369516 64369539 -137958808 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 64370721 64370743 -137957604 + AT_rich Low_complexity Low_complexity 1 22 0 1771 170 13 20 chr4 64371448 64371754 -137956593 - AluJb SINE Alu -8 304 1 2051 325 141 28 chr4 64372018 64373730 -137954617 + L2 LINE L2 66 1970 -1344 180 304 0 0 chr4 64373762 64373818 -137954529 + L2 LINE L2 2136 2191 -1123 4182 172 13 20 chr4 64373882 64374744 -137953603 - L1MA8 LINE L1 0 7251 6396 * 5312 121 16 7 chr4 64374737 64375921 -137952426 - L1PA16 LINE L1 -2 6164 4970 3486 171 28 21 chr4 64375933 64376240 -137952107 - L1MA8 LINE L1 -743 6363 6060 255 61 0 0 chr4 64376240 64376273 -137952074 + (TG)n Simple_repeat Simple_repeat 2 34 0 3486 171 28 21 chr4 64376273 64376790 -137951557 - L1MA8 LINE L1 -1046 6060 5567 8592 211 8 7 chr4 64376800 64378729 -137949618 - L1MA8 LINE L1 -1923 5183 3253 5587 157 14 13 chr4 64378725 64380358 -137947989 + L1PB1 LINE L1 4518 6148 -3 * 8012 206 36 49 chr4 64380361 64382315 -137946032 - L1 LINE L1 -1528 6037 4120 2357 103 0 3 chr4 64382315 64382626 -137945721 + AluSx SINE Alu 1 310 -2 8012 206 36 49 chr4 64382626 64383085 -137945262 - L1 LINE L1 -3445 4120 3656 384 313 42 0 chr4 64383087 64383279 -137945068 - L1 LINE L1 -4759 2806 2607 6857 259 81 32 chr4 64383321 64386614 -137941733 - L1MA8 LINE L1 -3942 3623 462 478 311 85 21 chr4 64386662 64386892 -137941455 + L2 LINE L2 2906 3151 -158 2434 204 41 29 chr4 64386892 64387447 -137940900 + MER68 LTR ERV1 1 562 0 2389 224 15 29 chr4 64387452 64387659 -137940688 - MLT2B1 LTR ERVL 0 520 312 2083 173 13 68 chr4 64387659 64388116 -137940231 - MSTB1 LTR MaLR 0 432 1 2389 224 15 29 chr4 64388116 64388435 -137939912 - MLT2B1 LTR ERVL -208 312 1 247 366 19 25 chr4 64388440 64388601 -137939746 + L2 LINE L2 3152 3311 -2 376 286 109 9 chr4 64388634 64388854 -137939493 + L1M4 LINE L1 4418 4659 -1487 246 32 0 0 chr4 64389082 64389113 -137939234 + (CA)n Simple_repeat Simple_repeat 2 32 0 465 329 145 30 chr4 64389376 64389783 -137938564 - L2 LINE L2 -2524 790 337 863 236 47 13 chr4 64389790 64390107 -137938240 + MLT1A1 LTR MaLR 4 365 0 252 159 23 0 chr4 64390107 64390151 -137938196 + MLT1A1-int LTR MaLR 1 45 -1690 2146 216 23 33 chr4 64390158 64390671 -137937676 + MLT1A1-int LTR MaLR 182 689 -1046 576 191 0 9 chr4 64390673 64390783 -137937564 + MLT-int LTR MaLR 76 184 -1551 * 947 161 118 35 chr4 64390764 64391019 -137937328 + L1MB1 LINE L1 5893 6168 0 676 278 100 80 chr4 64391475 64392223 -137936124 - LTR41 LTR ERVL -10 763 1 2168 191 30 65 chr4 64392608 64393180 -137935167 + MLT2B3 LTR ERVL 3 554 0 2109 106 17 0 chr4 64396258 64396560 -137931787 + AluSp SINE Alu 1 307 -6 22 35 0 0 chr4 64396622 64396651 -137931696 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr4 64396812 64396835 -137931512 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1937 168 29 6 chr4 64397604 64397944 -137930403 + MSTB LTR MaLR 1 348 -78 2906 165 28 8 chr4 64398716 64399226 -137929121 - MLT2B1 LTR ERVL 0 520 1 516 348 63 13 chr4 64400263 64400657 -137927690 - L1PA12 LINE L1 -7167 414 1 338 177 0 0 chr4 64400663 64400725 -137927622 - L1M1 LINE L1 -5468 2097 2036 1715 165 45 28 chr4 64401551 64401909 -137926438 - THE1B LTR MaLR 0 364 1 1900 171 17 22 chr4 64402313 64402675 -137925672 - THE1C LTR MaLR -2 373 14 21 36 0 0 chr4 64403349 64403377 -137924970 + AT_rich Low_complexity Low_complexity 1 28 0 247 310 108 8 chr4 64404206 64404335 -137924012 - L2 LINE L2 -1265 2049 1908 2435 71 0 7 chr4 64404540 64404848 -137923499 + AluSp SINE Alu 3 308 -5 421 303 0 8 chr4 64405044 64405166 -137923181 - MIR SINE MIR -32 230 110 211 301 27 14 chr4 64405354 64405427 -137922920 - MIR3 SINE MIR -49 159 86 219 302 118 57 chr4 64405841 64405950 -137922397 + MIR SINE MIR 34 149 -59 216 397 17 9 chr4 64406215 64406331 -137922016 - MIR3 SINE MIR -5 203 87 1394 220 19 0 chr4 64407344 64407608 -137920739 + AluJb SINE Alu 1 269 -43 1815 164 0 11 chr4 64407753 64408040 -137920307 + AluJb SINE Alu 2 285 -27 230 0 33 0 chr4 64409059 64409089 -137919258 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 28 0 0 0 chr4 64409170 64409198 -137919149 + AT_rich Low_complexity Low_complexity 1 28 0 214 175 25 0 chr4 64410126 64410166 -137918181 + (CA)n Simple_repeat Simple_repeat 1 41 0 2124 111 10 0 chr4 64410212 64410501 -137917846 - AluSg SINE Alu -13 297 6 459 134 10 62 chr4 64411069 64411166 -137917181 - MER50 LTR ERV1 -642 92 1 407 306 50 44 chr4 64411166 64411186 -137917161 + L2 LINE L2 3129 3147 -166 1297 230 47 68 chr4 64411186 64411659 -137916688 - MLT1C LTR MaLR 0 467 5 407 306 50 44 chr4 64411659 64411818 -137916529 + L2 LINE L2 3147 3309 -4 1754 120 19 4 chr4 64412131 64412398 -137915949 + AluSp SINE Alu 43 313 0 731 182 96 149 chr4 64412554 64413043 -137915304 + MER4C LTR ERV1 3 465 0 235 239 23 11 chr4 64414496 64414584 -137913763 + T-rich Low_complexity Low_complexity 4 92 0 637 179 17 28 chr4 64414609 64414788 -137913559 + T-rich Low_complexity Low_complexity 3 179 0 351 123 62 0 chr4 64414789 64414854 -137913493 + CT-rich Low_complexity Low_complexity 3 71 0 429 193 7 104 chr4 64415435 64415533 -137912814 + FLAM_A SINE Alu 19 102 -209 2505 64 0 3 chr4 64415533 64415844 -137912503 - AluY SINE Alu 0 311 2 429 193 7 104 chr4 64415844 64415880 -137912467 + FLAM_A SINE Alu 102 140 -171 858 224 6 0 chr4 64415896 64416052 -137912295 + FRAM SINE Alu 1 153 -23 14262 187 34 23 chr4 64416434 64418963 -137909384 + L1MA3 LINE L1 7 2508 -5057 1631 180 25 3 chr4 64418963 64419247 -137909100 + AluSx SINE Alu 23 312 0 14262 187 34 23 chr4 64419247 64419853 -137908494 + L1MA3 LINE L1 2508 3106 -4459 2333 87 0 10 chr4 64419853 64420164 -137908183 + AluY SINE Alu 1 308 -3 14262 187 34 23 chr4 64420164 64422085 -137906262 + L1MA3 LINE L1 3106 5114 -2451 204 97 0 0 chr4 64422099 64422130 -137906217 + (GGAA)n Simple_repeat Simple_repeat 4 34 0 726 154 23 17 chr4 64422147 64422322 -137906025 + GA-rich Low_complexity Low_complexity 5 180 0 234 191 0 0 chr4 64422336 64422383 -137905964 + GA-rich Low_complexity Low_complexity 3 49 0 3768 202 21 5 chr4 64422399 64423235 -137905112 + L1MA3 LINE L1 5112 5961 -1604 5996 145 9 39 chr4 64423236 64424547 -137903800 + L1MA3 LINE L1 6443 7716 -8 197 274 158 0 chr4 64424636 64424731 -137903616 - L2 LINE L2 -521 2793 2684 339 356 10 10 chr4 64424823 64424924 -137903423 + MIR3 SINE MIR 15 115 -93 255 311 19 48 chr4 64425940 64426043 -137902304 + MIR SINE MIR 52 151 -111 222 167 119 0 chr4 64426323 64426365 -137901982 + MER5B DNA MER1_type 3 49 -129 248 368 43 8 chr4 64427845 64427962 -137900385 + MIR SINE MIR 32 152 -56 306 302 71 50 chr4 64427972 64428154 -137900193 - MIR SINE MIR -9 253 68 29 0 0 0 chr4 64428236 64428265 -137900082 + AT_rich Low_complexity Low_complexity 1 29 0 212 227 52 23 chr4 64428786 64428948 -137899399 + (TA)n Simple_repeat Simple_repeat 2 171 -7 2368 107 5 46 chr4 64428948 64429339 -137899008 + THE1C LTR MaLR 1 375 0 212 227 52 23 chr4 64429339 64429348 -137898999 + (TA)n Simple_repeat Simple_repeat 171 178 0 1281 154 0 10 chr4 64430622 64430861 -137897486 + AluJb SINE Alu 87 323 0 430 273 81 71 chr4 64430955 64431843 -137896504 + L1MEd LINE L1 648 1579 -4731 445 390 16 0 chr4 64432075 64432324 -137896023 - L2 LINE L2 -944 2370 2118 245 308 236 19 chr4 64432658 64432866 -137895481 - L2 LINE L2 -101 3212 2960 24 67 0 0 chr4 64436095 64436140 -137892207 + AT_rich Low_complexity Low_complexity 1 45 0 1636 194 7 3 chr4 64436994 64437303 -137891044 + AluJb SINE Alu 1 310 -2 928 349 95 17 chr4 64438037 64438616 -137889731 + L2 LINE L2 477 1100 -2214 945 306 57 53 chr4 64438680 64439308 -137889039 + L2 LINE L2 2680 3309 -4 194 348 30 103 chr4 64439350 64439652 -137888695 - L2 LINE L2 -337 2977 2698 22 35 0 0 chr4 64440035 64440064 -137888283 + AT_rich Low_complexity Low_complexity 1 29 0 231 36 0 0 chr4 64440649 64440677 -137887670 + (T)n Simple_repeat Simple_repeat 1 28 0 777 158 23 8 chr4 64440853 64440986 -137887361 + AluSq/x SINE Alu 1 135 -177 225 0 0 0 chr4 64441285 64441310 -137887037 + (T)n Simple_repeat Simple_repeat 1 25 0 1862 143 11 4 chr4 64441486 64441766 -137886581 + AluSx SINE Alu 1 282 -30 216 0 0 0 chr4 64441769 64441793 -137886554 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 269 368 15 38 chr4 64442407 64442540 -137885807 - MER5A DNA MER1_type -6 183 54 321 301 58 0 chr4 64442855 64442958 -137885389 + L2 LINE L2 2613 2721 -593 387 313 71 65 chr4 64443190 64443500 -137884847 + L2 LINE L2 3001 3312 -1 1067 210 21 34 chr4 64443840 64444078 -137884269 - MER8 DNA MER2_type -1 238 4 197 275 72 14 chr4 64444504 64444573 -137883774 - L2 LINE L2 0 3313 3241 2637 158 17 58 chr4 64444868 64445450 -137882897 + MER89 LTR ERV1 2 559 0 7020 100 5 6 chr4 64446157 64447113 -137881234 + Charlie3 DNA MER1_type 1 955 -1755 714 140 18 0 chr4 64447128 64447242 -137881105 + Charlie3 DNA MER1_type 2587 2702 -8 31 58 0 0 chr4 64447242 64447294 -137881053 + AT_rich Low_complexity Low_complexity 1 52 0 320 273 104 47 chr4 64447878 64448140 -137880207 + MLT1L LTR MaLR 230 615 0 27 29 0 0 chr4 64448178 64448212 -137880135 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr4 64448346 64448370 -137879977 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr4 64448799 64448825 -137879522 + AT_rich Low_complexity Low_complexity 1 26 0 1072 199 18 104 chr4 64448825 64449152 -137879195 - AluJo SINE Alu -3 299 1 1019 329 59 18 chr4 64450951 64451407 -137876940 + LTR33 LTR ERVL 47 521 0 364 285 57 16 chr4 64451711 64451967 -137876380 - L1ME LINE L1 -539 5582 5320 194 321 181 50 chr4 64451999 64452663 -137875684 - L2 LINE L2 -852 2462 1712 532 176 25 34 chr4 64453089 64453208 -137875139 + L1M4 LINE L1 5199 5316 -830 400 187 0 6 chr4 64453208 64453287 -137875060 + AluSx SINE Alu 1 61 -242 3052 262 108 23 chr4 64453584 64455118 -137873229 + L1M3d LINE L1 1 1366 -4525 1629 215 73 39 chr4 64455140 64455725 -137872622 + L1M3d LINE L1 2540 3144 -2826 25 90 0 0 chr4 64455842 64455909 -137872438 + AT_rich Low_complexity Low_complexity 1 67 0 246 237 52 31 chr4 64456157 64456254 -137872093 + L1PA16 LINE L1 2084 2182 -5399 978 320 34 13 chr4 64456473 64456857 -137871490 + L1PA16 LINE L1 2183 2574 -5007 7828 217 70 73 chr4 64456880 64458590 -137869757 + L1PA16 LINE L1 2709 4422 -3182 10916 34 17 6 chr4 64458590 64460674 -137867673 + L1PA4 LINE L1 4059 6152 -3 7828 217 70 73 chr4 64460674 64461568 -137866779 + L1PA16 LINE L1 4422 5317 -2287 2500 112 8 11 chr4 64461568 64461933 -137866414 + THE1B LTR MaLR 1 364 0 7828 217 70 73 chr4 64461933 64462134 -137866213 + L1PA16 LINE L1 5317 5517 -2087 1632 142 0 8 chr4 64462134 64462380 -137865967 + AluSx SINE Alu 53 296 -16 7828 217 70 73 chr4 64462380 64463404 -137864943 + L1PA16 LINE L1 5517 6542 -1062 2102 141 7 0 chr4 64463404 64463701 -137864646 + AluSx SINE Alu 1 299 -13 7828 217 70 73 chr4 64463701 64464426 -137863921 + L1PA16 LINE L1 6542 7603 -1 33 43 0 0 chr4 64464557 64464604 -137863743 + AT_rich Low_complexity Low_complexity 1 47 0 2067 151 0 0 chr4 64464992 64465290 -137863057 + AluSx SINE Alu 1 298 -14 447 367 68 26 chr4 64465585 64466116 -137862231 - HAL1 LINE L1 -987 1520 968 2172 105 3 3 chr4 64466350 64466646 -137861701 + AluSp SINE Alu 1 296 -17 30 27 0 0 chr4 64466847 64466884 -137861463 + AT_rich Low_complexity Low_complexity 1 37 0 1844 170 3 0 chr4 64466890 64467202 -137861145 + AluSp SINE Alu 1 313 0 211 378 41 10 chr4 64467855 64467953 -137860394 - MER5A DNA MER1_type -3 186 86 2245 117 3 0 chr4 64467969 64468276 -137860071 + AluSp SINE Alu 1 308 -5 2685 141 12 10 chr4 64471347 64471765 -137856582 - MSTA LTR MaLR -2 426 8 275 230 100 20 chr4 64472326 64472426 -137855921 + L2 LINE L2 2510 2617 -697 202 346 40 20 chr4 64472440 64472541 -137855806 + L2 LINE L2 2926 3028 -285 2095 128 0 0 chr4 64472572 64472862 -137855485 + AluSx SINE Alu 1 290 -22 7544 30 0 0 chr4 64473332 64474376 -137853971 - L1PA3 LINE L1 0 6155 5109 194 277 21 0 chr4 64474480 64474527 -137853820 + L2 LINE L2 455 502 -2812 862 169 0 0 chr4 64474835 64474983 -137853364 + MLT1A1 LTR MaLR 1 148 -217 3287 241 20 50 chr4 64475084 64475984 -137852363 + MLT-int LTR MaLR 164 1036 -699 2080 239 47 0 chr4 64475956 64476400 -137851947 + MLT1A1-int LTR MaLR 1268 1732 -3 * 1699 206 25 6 chr4 64476403 64476728 -137851619 + MLT1A1 LTR MaLR 1 331 -34 530 323 30 5 chr4 64477074 64477272 -137851075 - MIR SINE MIR -48 214 12 199 306 35 24 chr4 64477302 64477387 -137850960 + L2 LINE L2 1182 1267 -2047 21 0 0 0 chr4 64478460 64478481 -137849866 + AT_rich Low_complexity Low_complexity 1 21 0 704 218 37 24 chr4 64478501 64478706 -137849641 - L1MCb LINE L1 -4560 2090 1829 1758 258 45 16 chr4 64478715 64479692 -137848655 - L1MCb LINE L1 -4851 1194 570 373 107 13 67 chr4 64479731 64479753 -137848594 + Tigger4(Zombi) DNA MER2_type 2661 2683 -48 3164 73 34 18 chr4 64479753 64480190 -137848157 + MLT2A1 LTR ERVL 1 444 0 373 107 13 67 chr4 64480190 64480242 -137848105 + Tigger4(Zombi) DNA MER2_type 2683 2731 0 1577 267 45 32 chr4 64480242 64480797 -137847550 - L1MCb LINE L1 -5476 569 8 410 109 0 0 chr4 64481359 64481423 -137846924 - L1PA8 LINE L1 -6 6166 6103 3244 148 76 7 chr4 64481773 64482380 -137845967 - MER39B LTR ERV1 -1 652 4 281 270 54 54 chr4 64482395 64482617 -137845730 + L1ME2 LINE L1 5707 5928 -236 25 31 0 0 chr4 64482819 64482851 -137845496 + AT_rich Low_complexity Low_complexity 1 32 0 192 318 100 18 chr4 64482856 64482966 -137845381 + MIR SINE MIR 97 215 -47 317 292 45 52 chr4 64484736 64484890 -137843457 - MIR SINE MIR -53 209 57 21 0 0 0 chr4 64485803 64485824 -137842523 + AT_rich Low_complexity Low_complexity 1 21 0 208 261 239 0 chr4 64486764 64486852 -137841495 + L3 LINE CR1 1468 1576 -1 3775 244 62 47 chr4 64487256 64487944 -137840403 - L1M4 LINE L1 -5309 1233 518 3518 133 66 5 chr4 64487944 64488487 -137839860 - LTR9B LTR ERV1 0 644 59 219 36 0 0 chr4 64488487 64488515 -137839832 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3518 133 66 5 chr4 64488515 64488578 -137839769 - LTR9B LTR ERV1 -585 59 1 3775 244 62 47 chr4 64488578 64489099 -137839248 - L1M4 LINE L1 -6024 518 6 1530 265 43 45 chr4 64489214 64489570 -137838777 - MLT2B3 LTR ERVL -45 509 153 2476 52 0 10 chr4 64489570 64489877 -137838470 + AluY SINE Alu 1 304 -7 1530 265 43 45 chr4 64489877 64490029 -137838318 - MLT2B3 LTR ERVL -401 153 2 748 271 41 58 chr4 64490332 64490675 -137837672 + L2 LINE L2 2359 2695 -619 1516 182 27 20 chr4 64492037 64492334 -137836013 + AluJo SINE Alu 3 301 -11 22 35 0 0 chr4 64493042 64493071 -137835276 + AT_rich Low_complexity Low_complexity 1 29 0 678 82 24 158 chr4 64493074 64493253 -137835094 - L1MB1 LINE L1 -1 6167 6007 205 248 105 38 chr4 64494153 64494258 -137834089 + MIR SINE MIR 119 230 -32 1046 261 11 61 chr4 64496907 64497286 -137831061 + MLT2C1 LTR ERVL 3 362 -35 22 0 0 0 chr4 64497501 64497523 -137830824 + AT_rich Low_complexity Low_complexity 1 22 0 218 358 47 40 chr4 64497842 64497990 -137830357 - L2 LINE L2 -2 3270 3122 228 379 11 0 chr4 64500804 64500891 -137827456 + L2 LINE L2 2966 3053 -219 230 325 77 43 chr4 64500944 64501061 -137827286 + MIR SINE MIR 29 149 -113 1482 154 7 33 chr4 64504990 64505262 -137823085 - Tigger1 DNA MER2_type 0 2418 2154 * 3460 167 31 3 chr4 64505260 64505871 -137822476 - Tigger1 DNA MER2_type -1790 628 1 22 0 0 0 chr4 64506509 64506531 -137821816 + AT_rich Low_complexity Low_complexity 1 22 0 242 283 30 0 chr4 64506648 64506747 -137821600 + L1ME2 LINE L1 6063 6164 0 794 244 56 0 chr4 64506796 64506976 -137821371 - MER3 DNA MER1_type -5 204 15 15896 174 35 23 chr4 64509213 64516348 -137811999 - L1MA1 LINE L1 0 7721 505 1233 215 46 52 chr4 64517546 64517913 -137810434 + MLT1A1 LTR MaLR 1 365 0 591 270 0 0 chr4 64518098 64518362 -137809985 + (TA)n Simple_repeat Simple_repeat 1 264 0 261 134 45 15 chr4 64518362 64518429 -137809918 + LOR1-int LTR ERV1 854 922 -7198 261 134 45 15 chr4 64518446 64518513 -137809834 + LOR1-int LTR ERV1 854 922 -7198 318 293 0 0 chr4 64518530 64518646 -137809701 + (TG)n Simple_repeat Simple_repeat 1 116 0 204 125 0 0 chr4 64518751 64518783 -137809564 + (TA)n Simple_repeat Simple_repeat 2 33 0 345 274 82 15 chr4 64519379 64519514 -137808833 - MIR SINE MIR -48 214 71 429 310 118 18 chr4 64520064 64520293 -137808054 + MIR SINE MIR 6 257 -5 426 312 23 17 chr4 64520992 64521165 -137807182 - MER5B DNA MER1_type -4 174 1 651 232 43 54 chr4 64521446 64521631 -137806716 - MER20 DNA MER1_type 0 219 37 1083 216 21 8 chr4 64522066 64522302 -137806045 - MER8 DNA MER2_type 0 239 1 400 267 131 16 chr4 64522330 64522521 -137805826 + HAL1 LINE L1 741 953 -1554 22 56 0 0 chr4 64522619 64522655 -137805692 + AT_rich Low_complexity Low_complexity 1 36 0 325 288 72 52 chr4 64522671 64522824 -137805523 + HAL1 LINE L1 1162 1317 -1190 1515 217 75 8 chr4 64522824 64523184 -137805163 + MLT1B LTR MaLR 7 390 0 1805 298 80 35 chr4 64523214 64524282 -137804065 + HAL1 LINE L1 1390 2505 -2 2048 124 0 7 chr4 64524304 64524617 -137803730 + AluSc SINE Alu 1 311 0 192 170 0 0 chr4 64525144 64525197 -137803150 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 205 167 0 0 chr4 64527257 64527293 -137801054 + (CA)n Simple_repeat Simple_repeat 2 37 0 510 229 35 42 chr4 64528901 64529045 -137799302 - L2 LINE L2 0 3313 3171 24 0 0 0 chr4 64530354 64530378 -137797969 + AT_rich Low_complexity Low_complexity 1 24 0 356 237 144 0 chr4 64531060 64531178 -137797169 + MIR SINE MIR 99 233 -29 256 302 62 99 chr4 64531683 64531925 -137796422 - HERVL68 LTR ERVL -314 2723 2491 1441 230 8 32 chr4 64532003 64532382 -137795965 + MLT1A2 LTR MaLR 1 370 -4 2544 64 0 0 chr4 64532546 64532857 -137795490 - AluY SINE Alu 0 311 1 399 319 42 16 chr4 64533724 64533911 -137794436 - MIR SINE MIR -50 212 19 2346 154 54 5 chr4 64535145 64535553 -137792794 + MSTA LTR MaLR 1 428 0 187 362 163 56 chr4 64535670 64536062 -137792285 - L2 LINE L2 -15 3257 2824 301 310 20 20 chr4 64536274 64536374 -137791973 - L2 LINE L2 -18 3254 3155 7864 12 1 0 chr4 64536954 64538301 -137790046 + L1PA2 LINE L1 4807 6154 -1 255 61 0 0 chr4 64539060 64539093 -137789254 + (GA)n Simple_repeat Simple_repeat 1 33 0 623 299 55 23 chr4 64539578 64539886 -137788461 - MLT1I LTR MaLR -2 407 90 322 299 69 44 chr4 64540255 64540459 -137787888 + MLT1J2 LTR MaLR 3 211 -239 243 262 131 0 chr4 64540562 64540669 -137787678 + MLT1I LTR MaLR 284 404 -5 27 62 0 0 chr4 64540761 64540809 -137787538 + AT_rich Low_complexity Low_complexity 1 48 0 306 303 18 9 chr4 64541059 64541168 -137787179 + L1MC4 LINE L1 6614 6723 -1319 579 192 0 0 chr4 64541197 64541374 -137786973 + (TA)n Simple_repeat Simple_repeat 2 178 0 251 190 38 13 chr4 64541399 64541478 -137786869 + L1MC3 LINE L1 6571 6651 -1134 449 285 148 55 chr4 64542002 64542332 -137786015 - L3 LINE CR1 -10 1567 1207 351 65 0 0 chr4 64542537 64542583 -137785764 + (TA)n Simple_repeat Simple_repeat 1 46 0 1544 216 53 13 chr4 64542608 64542983 -137785364 + MLT1B LTR MaLR 1 390 0 22 35 0 0 chr4 64543283 64543312 -137785035 + AT_rich Low_complexity Low_complexity 1 29 0 22224 188 24 14 chr4 64543604 64550073 -137778274 - L1PA11 LINE L1 -2 7610 1 358 281 105 44 chr4 64550482 64550710 -137777637 + MLT1H LTR MaLR 306 547 -2 21 36 0 0 chr4 64551912 64551940 -137776407 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 64552097 64552126 -137776221 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr4 64552281 64552318 -137776029 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr4 64552413 64552441 -137775906 + AT_rich Low_complexity Low_complexity 1 28 0 365 284 19 22 chr4 64552671 64552960 -137775387 + MER112 DNA MER1_type 2 256 -4 4505 174 71 35 chr4 64553179 64554199 -137774148 + L1MCa LINE L1 2 1057 -5369 5419 38 11 0 chr4 64554445 64555099 -137773248 - L1PA4 LINE L1 -6 6149 5489 613 246 24 30 chr4 64555532 64555699 -137772648 - MIR SINE MIR -95 167 2 1330 227 36 10 chr4 64556829 64557221 -137771126 + AluJb SINE Alu 1 400 0 2111 104 7 7 chr4 64557357 64557654 -137770693 - AluSx SINE Alu -15 297 1 2794 148 29 31 chr4 64557654 64558202 -137770145 - Tigger3(Golem) DNA MER2_type 0 3029 2483 320 294 186 10 chr4 64558751 64558955 -137769392 + MLT1L LTR MaLR 1 240 -375 262 315 88 11 chr4 64559072 64559253 -137769094 + MLT1L LTR MaLR 419 613 -2 702 296 174 18 chr4 64559504 64559832 -137768515 + LTR16A LTR ERVL 16 394 -56 675 307 45 62 chr4 64559872 64560321 -137768026 + HERV16 LTR ERVL 1 441 -4555 1896 159 20 34 chr4 64560419 64560772 -137767575 + THE1B LTR MaLR 1 348 -16 10519 109 48 0 chr4 64560780 64562287 -137766060 + THE1B-int LTR MaLR 1 1580 0 2077 146 25 25 chr4 64562287 64562651 -137765696 + THE1B LTR MaLR 1 364 0 411 335 45 23 chr4 64562672 64562893 -137765454 + HERV16 LTR ERVL 590 815 -4181 1279 293 52 5 chr4 64563151 64563577 -137764770 + HERV16 LTR ERVL 927 1372 -3624 744 267 67 41 chr4 64563757 64563819 -137764528 + HERV16 LTR ERVL 1667 1726 -3270 2215 57 50 0 chr4 64563819 64564100 -137764247 + AluY SINE Alu 2 296 -15 744 267 67 41 chr4 64564100 64564352 -137763995 + HERV16 LTR ERVL 1726 1989 -3007 522 257 42 0 chr4 64565321 64565465 -137762882 + LTR16A LTR ERVL 301 450 0 343 334 174 19 chr4 64566339 64566639 -137761708 + L3 LINE CR1 349 601 -976 2412 89 3 6 chr4 64566639 64566953 -137761394 - AluSp SINE Alu 0 313 1 343 334 174 19 chr4 64566953 64567185 -137761162 + L3 LINE CR1 601 964 -613 266 352 30 57 chr4 64567320 64567550 -137760797 - MIR SINE MIR -7 255 32 1640 209 0 7 chr4 64568828 64569124 -137759223 + AluJo SINE Alu 1 294 -18 2438 74 0 0 chr4 64569888 64570199 -137758148 - AluY SINE Alu 0 311 1 253 23 0 68 chr4 64570292 64570336 -137758011 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 370 294 147 16 chr4 64570359 64570543 -137757804 - MIR SINE MIR 0 262 55 22 0 0 0 chr4 64570786 64570808 -137757539 + AT_rich Low_complexity Low_complexity 1 22 0 511 214 98 9 chr4 64571592 64571704 -137756643 + MER58 DNA MER1_type 44 282 -59 6674 73 3 3 chr4 64571961 64573624 -137754723 - L1PA7 LINE L1 -2 6152 4481 567 126 48 0 chr4 64573635 64573738 -137754609 - L1PA7 LINE L1 -2809 3337 3230 9441 111 6 1 chr4 64573750 64575169 -137753178 - L1P LINE L1 -1683 4463 3038 7652 207 17 13 chr4 64575166 64577808 -137750539 - L1PA16 LINE L1 -10 6156 3505 * 14033 194 98 15 chr4 64577835 64579018 -137749329 - L1PA4 LINE L1 -1140 5657 4574 7181 47 1 0 chr4 64579018 64580162 -137748185 + L1PA4 LINE L1 5658 6803 -3 14033 194 98 15 chr4 64580162 64581668 -137746679 - L1PA13 LINE L1 -2223 4574 3194 7175 47 0 0 chr4 64581668 64582647 -137745700 - L1PA4 LINE L1 -3 6152 5174 14033 194 98 15 chr4 64582647 64583796 -137744551 - L1PA13 LINE L1 -3603 3194 1471 1425 353 6 4 chr4 64583799 64584315 -137744032 - L1PA13 LINE L1 -6270 517 1 291 274 12 0 chr4 64584483 64584567 -137743780 - MLT1E LTR MaLR 0 593 509 2778 233 29 75 chr4 64584577 64585380 -137742967 - MLT1B-int LTR MaLR -500 871 113 2066 125 3 0 chr4 64585380 64585669 -137742678 - AluSg SINE Alu -20 290 1 2778 233 29 75 chr4 64585669 64585778 -137742569 - MLT1B-int LTR MaLR -1258 113 1 641 289 95 46 chr4 64585778 64586145 -137742202 - MLT1B LTR MaLR 0 390 6 273 29 0 0 chr4 64587400 64587434 -137740913 + (CAATT)n Simple_repeat Simple_repeat 5 38 0 2451 121 3 3 chr4 64587445 64587809 -137740538 - THE1B LTR MaLR 0 364 1 25 90 0 0 chr4 64589363 64589430 -137738917 + AT_rich Low_complexity Low_complexity 1 67 0 431 240 115 91 chr4 64589605 64589813 -137738534 + MLT1F1 LTR MaLR 63 275 -292 625 236 8 0 chr4 64589814 64589941 -137738406 - MLT1A1 LTR MaLR -237 128 1 26 0 0 0 chr4 64590117 64590143 -137738204 + AT_rich Low_complexity Low_complexity 1 26 0 257 297 112 22 chr4 64590181 64590763 -137737584 - L1M4 LINE L1 -2887 3259 2626 322 301 19 10 chr4 64590816 64590919 -137737428 - L1M4 LINE L1 -3600 2546 2443 1403 213 0 0 chr4 64590921 64591207 -137737140 - L1P LINE L1 -1982 4164 3879 315 23 0 0 chr4 64591635 64591678 -137736669 + L1PA4 LINE L1 6113 6155 0 198 0 0 0 chr4 64592320 64592335 -137736012 + (TA)n Simple_repeat Simple_repeat 1 37 0 198 0 0 0 chr4 64592335 64592357 -137735990 + (TA)n Simple_repeat Simple_repeat 2 23 0 226 405 35 17 chr4 64593523 64593639 -137734708 + L2 LINE L2 3165 3282 -31 2359 206 87 2 chr4 64593687 64594202 -137734145 - MER89 LTR ERV1 0 559 1 334 368 82 0 chr4 64595658 64595840 -137732507 - MIR SINE MIR -8 254 58 22 0 0 0 chr4 64596820 64596842 -137731505 + AT_rich Low_complexity Low_complexity 1 22 0 242 315 9 0 chr4 64599029 64599140 -137729207 - L1P LINE L1 -2348 3798 3687 5845 88 3 0 chr4 64599416 64600200 -137728147 - L1PA7 LINE L1 -5 6149 5364 574 292 108 50 chr4 64600377 64601510 -137726837 - L1MDa LINE L1 -2984 3556 2345 1744 210 58 18 chr4 64602035 64602476 -137725871 + MLT1D LTR MaLR 12 624 -2 1844 106 6 26 chr4 64602536 64602847 -137725500 - L1PA13 LINE L1 -4 6159 5855 26 64 0 0 chr4 64603949 64603996 -137724351 + AT_rich Low_complexity Low_complexity 1 47 0 2691 10 0 0 chr4 64604134 64604432 -137723915 - AluYa5 SINE Alu -13 298 1 2176 97 10 0 chr4 64606275 64606565 -137721782 + AluSc SINE Alu 13 305 -4 872 205 12 12 chr4 64606816 64606987 -137721360 - FAM SINE Alu 0 175 5 1885 133 85 20 chr4 64607233 64607585 -137720762 + THE1C LTR MaLR 1 375 0 1157 245 91 63 chr4 64607620 64608211 -137720136 - LTR1B LTR ERV1 0 826 219 2112 200 35 24 chr4 64609756 64610215 -137718132 - MLT2C2 LTR ERVL 0 464 1 22 35 0 0 chr4 64610318 64610347 -137718000 + AT_rich Low_complexity Low_complexity 1 29 0 1806 145 7 3 chr4 64610359 64610641 -137717706 + AluSq SINE Alu 1 283 -30 249 57 0 0 chr4 64610651 64610686 -137717661 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 1513 200 0 42 chr4 64611784 64612094 -137716253 - AluJo SINE Alu -11 301 5 21 57 0 0 chr4 64612713 64612748 -137715599 + AT_rich Low_complexity Low_complexity 1 35 0 245 369 77 10 chr4 64613228 64613423 -137714924 - L2 LINE L2 -219 3053 2846 387 206 54 43 chr4 64614189 64614281 -137714066 + MLT1E LTR MaLR 72 164 -429 1901 122 22 26 chr4 64614321 64614632 -137713715 - AluSx SINE Alu -2 310 1 449 292 39 8 chr4 64614647 64614777 -137713570 + MLT1E LTR MaLR 119 252 -341 2527 276 17 26 chr4 64614825 64615594 -137712753 + L1M3b LINE L1 2 763 -5518 26 74 0 0 chr4 64615814 64615868 -137712479 + AT_rich Low_complexity Low_complexity 1 54 0 22 56 0 0 chr4 64615885 64615921 -137712426 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chr4 64616801 64616825 -137711522 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 204 352 68 0 chr4 64617013 64617101 -137711246 + L3b LINE CR1 1320 1413 -170 22 0 0 0 chr4 64617256 64617278 -137711069 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 64618106 64618137 -137710210 + AT_rich Low_complexity Low_complexity 1 31 0 321 282 89 40 chr4 64618198 64618370 -137709977 + L1MCa LINE L1 1706 1891 -4535 633 27 0 0 chr4 64618370 64618445 -137709902 + (GAGAA)n Simple_repeat Simple_repeat 2 76 0 321 282 89 40 chr4 64618445 64618474 -137709873 + L1MCa LINE L1 1891 1917 -4509 225 154 0 0 chr4 64618478 64618517 -137709830 + GA-rich Low_complexity Low_complexity 4 42 0 21 0 0 0 chr4 64618583 64618604 -137709743 + AT_rich Low_complexity Low_complexity 1 21 0 483 248 166 19 chr4 64618696 64618853 -137709494 - MER5A DNA MER1_type -1 188 9 560 298 169 21 chr4 64618919 64619784 -137708563 + L1MCa LINE L1 2244 3199 -3227 480 275 93 56 chr4 64619878 64620554 -137707793 + L1MCa LINE L1 3414 4114 -2312 488 291 161 0 chr4 64620555 64620754 -137707593 + L1MCa LINE L1 4361 4591 -1835 23 33 0 0 chr4 64620796 64620826 -137707521 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 64621785 64621808 -137706539 + AT_rich Low_complexity Low_complexity 1 23 0 2166 79 14 3 chr4 64622586 64622876 -137705471 - AluY SINE Alu -18 293 1 1233 212 47 47 chr4 64623246 64623609 -137704738 - MLT1A1 LTR MaLR -2 363 1 1676 221 11 37 chr4 64624639 64624756 -137703591 + MLT1A1 LTR MaLR 1 120 -245 3204 115 4 0 chr4 64624756 64625207 -137703140 - MLT2A2 LTR ERVL 0 453 1 1676 221 11 37 chr4 64625207 64625464 -137702883 + MLT1A1 LTR MaLR 120 365 0 27 29 0 0 chr4 64626570 64626604 -137701743 + AT_rich Low_complexity Low_complexity 1 34 0 35 41 0 0 chr4 64677769 64677818 -137650529 + AT_rich Low_complexity Low_complexity 1 49 0 29 28 0 0 chr4 64678688 64678724 -137649623 + AT_rich Low_complexity Low_complexity 1 36 0 202 288 0 76 chr4 64678812 64678878 -137649469 - L2 LINE L2 -18 3254 3194 281 328 219 8 chr4 64678935 64679200 -137649147 + L2 LINE L2 2440 2760 -554 316 269 0 0 chr4 64679284 64679351 -137648996 - MIR SINE MIR -129 133 67 291 319 89 51 chr4 64679420 64679655 -137648692 + MLT1J LTR MaLR 26 269 -242 426 176 20 108 chr4 64679683 64679785 -137648562 + MLT1A1-int LTR MaLR 1237 1329 -322 964 172 124 24 chr4 64679785 64679994 -137648353 + MSTA LTR MaLR 199 428 0 498 301 45 20 chr4 64680059 64680282 -137648065 - MIR SINE MIR -27 235 7 2110 171 19 64 chr4 64680446 64680683 -137647664 - L1PB4 LINE L1 -1 6155 5950 1848 161 4 0 chr4 64680683 64680963 -137647384 - AluSx SINE Alu -29 283 3 2110 171 19 64 chr4 64680963 64681206 -137647141 - L1PB4 LINE L1 -206 5950 5697 1451 153 68 0 chr4 64681344 64681579 -137646768 - AluJo SINE Alu -61 251 1 23 33 0 0 chr4 64681607 64681637 -137646710 + AT_rich Low_complexity Low_complexity 1 30 0 837 271 12 36 chr4 64683123 64683370 -137644977 - MIR SINE MIR -14 248 8 1787 174 34 26 chr4 64683506 64683857 -137644490 + MLT1A1 LTR MaLR 6 359 -6 232 135 19 0 chr4 64684938 64684990 -137643357 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 23 33 0 0 chr4 64685283 64685313 -137643034 + AT_rich Low_complexity Low_complexity 1 30 0 1844 190 64 3 chr4 64685486 64685859 -137642488 - MSTD LTR MaLR 0 396 1 897 171 76 171 chr4 64686848 64686906 -137641441 + L1ME2 LINE L1 5558 5620 -544 1864 178 0 0 chr4 64686906 64687210 -137641137 + AluSx SINE Alu 3 306 -6 897 171 76 171 chr4 64687210 64687422 -137640925 + L1ME2 LINE L1 5620 5764 -400 265 47 47 0 chr4 64687422 64687465 -137640882 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 897 171 76 171 chr4 64687465 64687679 -137640668 + L1ME2 LINE L1 5764 5997 -167 424 291 89 0 chr4 64688474 64688632 -137639715 + L2 LINE L2 2365 2536 -778 797 282 102 48 chr4 64688944 64689437 -137638910 + L2 LINE L2 2514 3039 -274 1033 278 60 19 chr4 64689535 64689905 -137638442 + MLT1J1 LTR MaLR 62 446 0 237 353 53 7 chr4 64689934 64690084 -137638263 + L2 LINE L2 3134 3290 -23 344 326 15 0 chr4 64690084 64690219 -137638128 + MER117 DNA MER1_type 11 147 -50 1571 261 98 4 chr4 64690641 64691123 -137637224 + L2 LINE L2 1850 2376 -938 490 310 29 6 chr4 64691370 64691541 -137636806 - MLT1I LTR MaLR -225 184 10 817 304 85 75 chr4 64691565 64692483 -137635864 + L2 LINE L2 2377 3312 -1 752 293 81 15 chr4 64692483 64692841 -137635506 - L2 LINE L2 -179 3134 2757 241 361 72 0 chr4 64692848 64692945 -137635402 - L2 LINE L2 -35 3237 3134 2327 77 0 7 chr4 64693389 64693687 -137634660 - AluSc SINE Alu -10 299 4 1374 161 112 15 chr4 64693693 64693960 -137634387 - AluJo SINE Alu -19 293 1 234 245 0 0 chr4 64694518 64694571 -137633776 - MIR SINE MIR -110 152 100 180 351 68 0 chr4 64694590 64694664 -137633683 + L2 LINE L2 3171 3249 -23 2092 160 43 31 chr4 64694664 64695200 -137633147 + MLT2A2 LTR ERVL 1 546 -8 26 50 0 0 chr4 64695447 64695487 -137632860 + AT_rich Low_complexity Low_complexity 1 40 0 2217 91 25 31 chr4 64697226 64697544 -137630803 + MER1A DNA MER1_type 214 529 0 180 331 188 0 chr4 64697563 64697696 -137630651 - MIR SINE MIR -73 189 32 1436 174 10 52 chr4 64698453 64698763 -137629584 + AluJb SINE Alu 1 297 -15 1526 213 22 14 chr4 64698873 64699234 -137629113 + MLT1A1 LTR MaLR 1 364 -1 419 267 33 33 chr4 64699234 64699384 -137628963 + MIR3 SINE MIR 48 197 -11 447 190 140 0 chr4 64699465 64699565 -137628782 - MER94 DNA DNA -9 125 12 434 310 131 22 chr4 64699728 64699957 -137628390 + MIR SINE MIR 9 262 0 310 331 129 67 chr4 64700075 64700446 -137627901 + L2 LINE L2 2899 3292 -21 189 0 0 0 chr4 64702108 64702129 -137626218 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chr4 64704535 64704556 -137623791 + AT_rich Low_complexity Low_complexity 1 21 0 42001 38 22 1 chr4 64704557 64710568 -137617779 - L1PA3 LINE L1 -2 6153 14 248 0 31 0 chr4 64710811 64710843 -137617504 + (TA)n Simple_repeat Simple_repeat 1 33 0 712 269 14 14 chr4 64710939 64711147 -137617200 + MER3 DNA MER1_type 2 209 0 809 323 50 20 chr4 64711629 64712029 -137616318 + L2 LINE L2 2886 3297 -16 282 185 0 77 chr4 64712068 64712133 -137616214 - MER58 DNA MER1_type -3 2417 2358 339 281 34 0 chr4 64712157 64712246 -137616101 - MER58 DNA MER1_type -121 94 3 342 0 0 0 chr4 64714404 64714442 -137613905 + (CA)n Simple_repeat Simple_repeat 2 39 0 27 0 0 0 chr4 64715106 64715133 -137613214 + AT_rich Low_complexity Low_complexity 1 27 0 2029 131 0 7 chr4 64715607 64715918 -137612429 - AluSc SINE Alu 0 309 2 1960 136 7 3 chr4 64716049 64716350 -137611997 + AluSx SINE Alu 6 307 -5 1543 242 21 28 chr4 64716561 64716949 -137611398 + MER82 DNA MER2_type 247 631 -22 210 356 78 27 chr4 64717891 64718110 -137610237 + L2 LINE L2 2420 2649 -665 338 178 11 0 chr4 64718625 64718715 -137609632 + (TA)n Simple_repeat Simple_repeat 2 92 0 180 342 44 9 chr4 64719632 64719746 -137608601 + L2 LINE L2 1920 2037 -1277 1956 143 3 10 chr4 64719756 64720063 -137608284 - AluSx SINE Alu -7 305 1 34 24 0 0 chr4 64720084 64720125 -137608222 + AT_rich Low_complexity Low_complexity 1 41 0 529 307 12 12 chr4 64720442 64720608 -137607739 + MIR SINE MIR 63 228 -34 283 349 143 18 chr4 64720644 64721028 -137607319 + L2 LINE L2 2396 2827 -487 274 232 171 12 chr4 64721358 64721440 -137606907 - MLT1J1 LTR MaLR -314 132 38 1685 257 82 5 chr4 64722580 64723152 -137605195 + L1ME3A LINE L1 5554 6169 -1 528 210 28 21 chr4 64723179 64723322 -137605025 + L1MC5 LINE L1 7791 7934 -27 2431 257 51 23 chr4 64723336 64724432 -137603915 + L1ME1 LINE L1 5031 6160 -6 11767 100 0 0 chr4 64724567 64727054 -137601293 + L1PA7 LINE L1 3648 6141 -13 197 304 36 0 chr4 64727594 64727650 -137600697 - MIR SINE MIR -160 102 45 196 298 35 53 chr4 64727904 64728018 -137600329 + MIR SINE MIR 49 160 -102 204 125 0 0 chr4 64728217 64728249 -137600098 + (TG)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr4 64728547 64728568 -137599779 + AT_rich Low_complexity Low_complexity 1 21 0 184 328 181 0 chr4 64728843 64728959 -137599388 + L2 LINE L2 1620 1756 -1558 1133 312 254 16 chr4 64728968 64730065 -137598282 + L2 LINE L2 1920 3297 -16 239 353 82 0 chr4 64731887 64731972 -137596375 - L2 LINE L2 -173 3099 3008 347 320 46 58 chr4 64732625 64732967 -137595380 - MLT1I LTR MaLR -4 405 67 27 49 0 0 chr4 64733322 64733363 -137594984 + AT_rich Low_complexity Low_complexity 1 41 0 894 311 48 46 chr4 64733908 64734039 -137594308 - LTR16C LTR ERVL 0 491 362 2238 109 0 0 chr4 64734039 64734333 -137594014 + AluSc SINE Alu 1 294 -15 894 311 48 46 chr4 64734333 64734616 -137593731 - LTR16C LTR ERVL -129 362 76 386 322 69 69 chr4 64734685 64735182 -137593165 - L2 LINE L2 -128 3185 2685 291 273 152 15 chr4 64735182 64735314 -137593033 + L1ME2 LINE L1 37 186 -6210 1602 269 86 13 chr4 64735332 64736041 -137592306 + L1ME2 LINE L1 4474 5234 -981 739 241 40 9 chr4 64736150 64736374 -137591973 + L1ME2 LINE L1 5709 5939 -294 258 164 0 0 chr4 64738393 64738448 -137589899 + CT-rich Low_complexity Low_complexity 2 56 0 1230 237 189 12 chr4 64740704 64741310 -137587037 - LTR50 LTR ERVL -2 793 44 248 225 42 14 chr4 64741440 64741511 -137586836 - L2 LINE L2 -221 3092 3020 855 341 120 10 chr4 64741540 64742032 -137586315 - L2 LINE L2 -410 2904 2359 27 81 0 0 chr4 64742961 64743023 -137585324 + AT_rich Low_complexity Low_complexity 1 62 0 30 27 0 0 chr4 64743036 64743073 -137585274 + AT_rich Low_complexity Low_complexity 1 37 0 1822 48 17 0 chr4 64744065 64744295 -137584052 + AluY SINE Alu 1 234 -77 267 54 0 0 chr4 64744307 64744344 -137584003 + (TTAA)n Simple_repeat Simple_repeat 3 39 0 362 365 140 19 chr4 64746005 64746649 -137581698 - L2 LINE L2 -740 2574 1853 188 65 0 32 chr4 64746649 64746680 -137581667 + (TTTTTA)n Simple_repeat Simple_repeat 2 31 0 2204 225 23 12 chr4 64747508 64748077 -137580270 + L1MB7 LINE L1 3876 4450 -1696 522 154 6 31 chr4 64748255 64748585 -137579762 + (TA)n Simple_repeat Simple_repeat 1 321 0 301 222 0 81 chr4 64748604 64748703 -137579644 - L1MC4 LINE L1 -1339 6703 6613 327 233 10 1 chr4 64748769 64748876 -137579471 + L1MB7 LINE L1 4448 4554 -1592 734 179 68 31 chr4 64748877 64749039 -137579308 + MLT1C LTR MaLR 1 168 -299 186 43 0 0 chr4 64749046 64749069 -137579278 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 1927 127 0 7 chr4 64749069 64749345 -137579002 - AluSx SINE Alu -33 279 6 2843 163 16 14 chr4 64749372 64749923 -137578424 - L1PA13 LINE L1 -988 5158 4607 5607 113 25 8 chr4 64749937 64750935 -137577412 + L1PA13 LINE L1 5151 6163 0 1072 204 75 34 chr4 64750962 64751227 -137577120 + MLT1C LTR MaLR 192 467 0 1857 227 24 55 chr4 64751232 64751871 -137576476 + L1MB7 LINE L1 4556 5174 -972 2617 203 28 11 chr4 64752107 64752347 -137576000 + L1MB7 LINE L1 5188 5422 -762 490 114 13 0 chr4 64752347 64752426 -137575921 + MADE1 DNA Mariner 1 80 0 2617 203 28 11 chr4 64752426 64752818 -137575529 + L1MB7 LINE L1 5422 5828 -356 986 203 26 0 chr4 64753046 64753238 -137575109 + L1MB7 LINE L1 5818 6014 -170 330 111 0 0 chr4 64757245 64757290 -137571057 + L1PA11 LINE L1 6083 6127 -47 258 300 18 18 chr4 64757478 64757588 -137570759 + Charlie8 DNA MER1_type 123 232 -2185 34 0 0 0 chr4 64759157 64759191 -137569156 + AT_rich Low_complexity Low_complexity 1 34 0 2069 134 7 0 chr4 64759304 64759630 -137568717 - AluSx SINE Alu 0 312 1 21 71 0 0 chr4 64760256 64760298 -137568049 + AT_rich Low_complexity Low_complexity 1 42 0 2212 61 17 10 chr4 64760376 64760673 -137567674 - L1PA5 LINE L1 -1 6153 5855 731 12 0 0 chr4 64760673 64760756 -137567591 + L1PA5 LINE L1 5760 5842 -312 278 388 30 42 chr4 64761304 64761639 -137566708 - L2 LINE L2 -529 2785 2455 202 337 163 28 chr4 64762114 64762512 -137565835 - L2 LINE L2 -589 2725 2274 1880 137 92 3 chr4 64763293 64763651 -137564696 + MLT1B LTR MaLR 1 390 0 180 0 0 0 chr4 64764425 64764445 -137563902 + (CA)n Simple_repeat Simple_repeat 2 21 0 306 89 0 0 chr4 64764838 64764883 -137563464 + MADE1 DNA Mariner 1 45 -35 457 269 90 0 chr4 64766430 64766586 -137561761 + MIR SINE MIR 88 257 -5 569 276 198 10 chr4 64766693 64766885 -137561462 + MIR SINE MIR 3 230 -32 1885 211 40 80 chr4 64766948 64767525 -137560822 + MLT2B3 LTR ERVL 1 554 0 23 0 0 0 chr4 64768004 64768027 -137560320 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr4 64768465 64768485 -137559862 + (CAA)n Simple_repeat Simple_repeat 2 21 0 329 287 169 69 chr4 64768870 64769275 -137559072 + L1MC4a LINE L1 5538 5986 -135 2431 185 80 13 chr4 64772354 64772889 -137555458 - L1MC2 LINE L1 -72 6272 5702 1882 197 67 71 chr4 64773895 64774214 -137554133 + MLT1D LTR MaLR 1 319 -186 1367 206 129 6 chr4 64774214 64774539 -137553808 - MLT1A1 LTR MaLR 0 365 1 1882 197 67 71 chr4 64774539 64774726 -137553621 + MLT1D LTR MaLR 319 505 0 207 167 0 0 chr4 64774771 64774807 -137553540 + T-rich Low_complexity Low_complexity 6 41 0 225 342 72 0 chr4 64774812 64774923 -137553424 + LTR33A LTR ERVL 60 178 -345 1159 224 99 10 chr4 64775369 64775682 -137552665 - L1MA9 LINE L1 -38 6274 5934 1906 146 21 0 chr4 64775707 64775868 -137552479 - AluSx SINE Alu -18 294 123 519 31 0 0 chr4 64775868 64775933 -137552414 + (TG)n Simple_repeat Simple_repeat 2 66 0 1906 146 21 0 chr4 64775933 64776059 -137552288 - AluSx SINE Alu -189 123 1 6210 147 70 14 chr4 64776354 64776644 -137551703 + Tigger3b DNA MER2_type 1 273 -2755 1480 194 23 23 chr4 64776644 64776943 -137551404 - AluJo SINE Alu -13 299 1 6210 147 70 14 chr4 64776943 64777818 -137550529 + Tigger3b DNA MER2_type 273 1231 0 25 51 0 0 chr4 64777969 64778008 -137550339 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr4 64780824 64780846 -137547501 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr4 64781393 64781419 -137546928 + AT_rich Low_complexity Low_complexity 1 26 0 312 27 0 0 chr4 64782835 64782872 -137545475 + (CA)n Simple_repeat Simple_repeat 2 38 0 30 83 0 0 chr4 64785234 64785306 -137543041 + AT_rich Low_complexity Low_complexity 1 72 0 1575 198 7 0 chr4 64785764 64786067 -137542280 + AluJo SINE Alu 3 307 -5 266 373 71 6 chr4 64787948 64788117 -137540230 + MLT1K LTR MaLR 147 326 -262 308 287 56 21 chr4 64788190 64788333 -137540014 + MLT1K LTR MaLR 440 587 -1 1201 126 0 0 chr4 64788578 64788745 -137539602 + AluSp SINE Alu 132 298 -15 736 346 84 37 chr4 64788745 64789420 -137538927 - L2 LINE L2 -108 3205 2488 195 236 68 74 chr4 64789633 64789781 -137538566 - L2 LINE L2 -94 3219 3073 * 273 357 16 0 chr4 64789762 64789888 -137538459 - L2 LINE L2 -1047 2267 2140 7540 34 0 0 chr4 64790119 64791750 -137536597 - L1PA4 LINE L1 0 6155 4525 8649 34 23 1 chr4 64791750 64792819 -137535528 + L1PA4 LINE L1 3433 4525 -1621 3263 137 22 8 chr4 64794761 64795251 -137533096 - MER1A DNA MER1_type 0 529 33 507 138 0 0 chr4 64795736 64795816 -137532531 - MADE1 DNA Mariner 0 80 1 729 281 38 14 chr4 64796773 64796983 -137531364 + MIR SINE MIR 12 226 -36 237 134 30 15 chr4 64797028 64797095 -137531252 + (TA)n Simple_repeat Simple_repeat 1 68 0 21 36 0 0 chr4 64797245 64797273 -137531074 + AT_rich Low_complexity Low_complexity 1 28 0 563 285 149 5 chr4 64797816 64798030 -137530317 + MIR SINE MIR 5 249 -13 277 278 72 21 chr4 64798041 64798138 -137530209 + MIR SINE MIR 6 107 -155 645 296 30 8 chr4 64799345 64799612 -137528735 - MLT1G1-int LTR MaLR -793 578 306 216 170 0 0 chr4 64799764 64799817 -137528530 + (TA)n Simple_repeat Simple_repeat 1 53 0 1129 301 98 34 chr4 64799821 64799839 -137528508 - MLT1G1 LTR MaLR -8 587 572 2312 192 70 19 chr4 64799839 64800366 -137527981 + MER74A LTR ERVL 5 558 0 1129 301 98 34 chr4 64800366 64800899 -137527448 - MLT1G1 LTR MaLR -23 572 1 1432 189 0 45 chr4 64801176 64801488 -137526859 + AluJo SINE Alu 1 298 -14 30 27 0 0 chr4 64801692 64801729 -137526618 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr4 64802058 64802090 -137526257 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr4 64802150 64802185 -137526162 + AT_rich Low_complexity Low_complexity 1 35 0 1627 181 31 3 chr4 64802343 64802636 -137525711 + AluJb SINE Alu 1 301 -11 1484 207 7 30 chr4 64803467 64803766 -137524581 - AluJo SINE Alu -16 296 5 248 277 31 0 chr4 64805774 64805839 -137522508 - Charlie8 DNA MER1_type -3 2414 2348 24 32 0 0 chr4 64806886 64806917 -137521430 + AT_rich Low_complexity Low_complexity 1 31 0 1833 98 7 22 chr4 64807171 64807446 -137520901 - AluSg SINE Alu -4 306 36 223 155 0 35 chr4 64808452 64808510 -137519837 + (TTA)n Simple_repeat Simple_repeat 3 58 0 2293 104 0 0 chr4 64808954 64809252 -137519095 - AluSq SINE Alu -15 298 1 22 0 0 0 chr4 64811000 64811022 -137517325 + AT_rich Low_complexity Low_complexity 1 22 0 432 123 111 0 chr4 64811719 64811800 -137516547 - MLT1H LTR MaLR -2 547 458 195 100 0 0 chr4 64811801 64811831 -137516516 + (AGCTG)n Simple_repeat Simple_repeat 1 30 0 1062 263 29 11 chr4 64811926 64812207 -137516140 - MLT1H LTR MaLR -246 303 18 2199 98 7 0 chr4 64814004 64814289 -137514058 + AluSx SINE Alu 8 294 -18 303 348 73 54 chr4 64814892 64815012 -137513335 - L3 LINE CR1 -2 1575 1459 1441 164 37 17 chr4 64815012 64815311 -137513036 + L1MA8 LINE L1 5984 6288 -3 303 348 73 54 chr4 64815311 64815506 -137512841 - L3 LINE CR1 -118 1459 1254 296 314 90 49 chr4 64815533 64815756 -137512591 - MIR SINE MIR 0 262 31 593 371 130 8 chr4 64815788 64816273 -137512074 - L3 LINE CR1 -329 1248 705 1673 231 14 8 chr4 64818101 64818464 -137509883 - MLT1A1 LTR MaLR 0 365 1 3676 227 81 68 chr4 64818465 64819814 -137508533 - MLT1A1-int LTR MaLR -1 1370 5 266 119 0 24 chr4 64819822 64819864 -137508483 - MLT1A1 LTR MaLR -5 369 329 277 139 0 0 chr4 64819968 64820011 -137508336 + MLT1A2 LTR MaLR 298 340 -34 1094 185 29 33 chr4 64820026 64820188 -137508159 - MLT1A1 LTR MaLR -123 242 80 1604 210 3 0 chr4 64820188 64820498 -137507849 - AluJb SINE Alu -1 311 1 1094 185 29 33 chr4 64820498 64820578 -137507769 - MLT1A1 LTR MaLR -285 80 1 741 240 44 0 chr4 64820578 64820760 -137507587 - MLT1E1 LTR MaLR -18 636 386 1907 29 0 38 chr4 64820760 64821000 -137507347 - L1PA4 LINE L1 -259 5896 5666 2043 28 0 4 chr4 64821000 64821240 -137507107 + L1PA4 LINE L1 5906 6152 -3 490 253 78 64 chr4 64821242 64821666 -137506681 - MLT1E1 LTR MaLR -198 428 1 213 39 0 0 chr4 64824624 64824650 -137503697 + (CA)n Simple_repeat Simple_repeat 2 27 0 246 307 105 0 chr4 64824648 64824765 -137503582 + L1ME3A LINE L1 2656 2784 -3362 1117 251 96 27 chr4 64824788 64825194 -137503153 + MLT2B1 LTR ERVL 1 434 -86 240 86 0 0 chr4 64825197 64825232 -137503115 + (CA)n Simple_repeat Simple_repeat 2 36 0 336 301 12 6 chr4 64825278 64825444 -137502903 + L1ME3A LINE L1 2810 2976 -3170 401 264 79 7 chr4 64825831 64825971 -137502376 + L1ME3A LINE L1 3004 3153 -2993 1321 192 13 76 chr4 64826183 64826500 -137501847 - AluJo SINE Alu -15 297 1 5439 134 30 17 chr4 64826530 64827425 -137500922 - L1PA16 LINE L1 -9 6157 5262 2318 108 37 6 chr4 64827425 64827778 -137500569 - THE1B LTR MaLR 0 364 1 5439 134 30 17 chr4 64827778 64827939 -137500408 - L1PA16 LINE L1 -904 5262 5105 542 287 66 92 chr4 64828042 64828498 -137499849 - L2 LINE L2 -1 3312 2869 612 311 63 45 chr4 64828507 64828886 -137499461 - LTR16C LTR ERVL -9 482 97 518 272 156 34 chr4 64829009 64829336 -137499011 - L2 LINE L2 -428 2886 2520 690 293 114 30 chr4 64829339 64830917 -137497430 + L1ME3A LINE L1 4105 5948 -222 254 89 71 107 chr4 64831105 64831161 -137497186 - MLT2D LTR ERVL 0 520 462 1687 197 42 11 chr4 64831212 64831567 -137496780 - MLT2D LTR ERVL -48 366 1 1770 176 11 0 chr4 64831568 64831847 -137496500 + AluJo SINE Alu 1 282 -30 291 54 0 0 chr4 64831850 64831866 -137496481 + (TG)n Simple_repeat Simple_repeat 1 53 0 291 54 0 0 chr4 64831866 64831903 -137496444 + (TG)n Simple_repeat Simple_repeat 2 38 0 503 316 13 6 chr4 64832263 64832421 -137495926 + MIR SINE MIR 81 239 -23 309 167 0 0 chr4 64832466 64832514 -137495833 + tRNA-Arg-CGC tRNA tRNA 1 48 -28 1899 231 48 48 chr4 64834535 64835075 -137493272 + MLT1E2 LTR MaLR 52 591 -35 2295 59 42 0 chr4 64836836 64837122 -137491225 + AluY SINE Alu 1 298 -13 253 335 49 49 chr4 64838961 64839164 -137489183 + L2 LINE L2 2578 2780 -534 22 80 0 0 chr4 64840203 64840253 -137488094 + AT_rich Low_complexity Low_complexity 1 50 0 24 0 0 0 chr4 64842547 64842571 -137485776 + AT_rich Low_complexity Low_complexity 1 24 0 35 24 0 0 chr4 64842589 64842631 -137485716 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr4 64843251 64843274 -137485073 + AT_rich Low_complexity Low_complexity 1 23 0 542 264 188 15 chr4 64843770 64843967 -137484380 - MIR SINE MIR -23 239 9 22 0 0 0 chr4 64844498 64844520 -137483827 + AT_rich Low_complexity Low_complexity 1 22 0 7183 48 7 0 chr4 64845196 64846831 -137481516 - L1PA5 LINE L1 0 6154 4514 2751 162 31 31 chr4 64846933 64847422 -137480925 + MER54B LTR ERVL 191 679 -114 576 260 107 44 chr4 64847604 64848028 -137480319 + L1MA2 LINE L1 5430 5887 -417 * 2847 183 73 16 chr4 64847699 64848437 -137479910 + L1MC2 LINE L1 5513 6312 -32 2242 27 0 0 chr4 64849374 64849635 -137478712 - L1PA3 LINE L1 0 6155 5895 385 321 98 11 chr4 64849752 64849988 -137478359 - MLT1J1 LTR MaLR -41 409 148 5211 191 42 12 chr4 64850100 64850469 -137477878 + L1 LINE L1 2635 2991 -3155 1630 221 16 30 chr4 64850469 64850835 -137477512 - MLT1A1 LTR MaLR -2 363 3 5211 191 42 12 chr4 64850835 64851665 -137476682 + L1 LINE L1 2991 3870 -2276 259 212 0 136 chr4 64852397 64852482 -137475865 - MIR SINE MIR -69 193 127 1877 159 31 33 chr4 64852482 64852873 -137475474 + MLT1B LTR MaLR 1 390 0 259 212 0 136 chr4 64852873 64852905 -137475442 - MIR SINE MIR -135 127 92 494 257 75 53 chr4 64852944 64853131 -137475216 + MIR3 SINE MIR 13 203 -5 260 184 58 92 chr4 64853142 64853229 -137475118 + MIR SINE MIR 112 195 -67 419 0 0 19 chr4 64853473 64853525 -137474822 + (CA)n Simple_repeat Simple_repeat 2 52 0 570 281 79 108 chr4 64855916 64856613 -137471734 - HAL1b LINE L1 -836 512 61 22 0 0 0 chr4 64857403 64857425 -137470922 + AT_rich Low_complexity Low_complexity 1 22 0 376 363 48 8 chr4 64857585 64857709 -137470638 + L2 LINE L2 3128 3256 -16 195 387 101 0 chr4 64858656 64858775 -137469572 - MIR SINE MIR -80 182 52 383 243 105 40 chr4 64858929 64859081 -137469266 - MER5A DNA MER1_type -22 167 6 198 0 0 0 chr4 64860867 64860889 -137467458 + (T)n Simple_repeat Simple_repeat 1 22 0 183 255 39 0 chr4 64860935 64860986 -137467361 - MIR SINE MIR -113 149 97 502 261 68 0 chr4 64861800 64861961 -137466386 - MER58B DNA MER1_type 0 341 170 393 22 0 0 chr4 64862166 64862212 -137466135 + (TG)n Simple_repeat Simple_repeat 2 47 0 409 331 97 6 chr4 64862827 64863002 -137465345 + MIR SINE MIR 2 192 -70 2129 109 3 0 chr4 64863216 64863499 -137464848 + AluSx SINE Alu 3 286 -26 23 0 0 0 chr4 64863499 64863522 -137464825 + AT_rich Low_complexity Low_complexity 1 23 0 477 307 98 12 chr4 64863730 64863893 -137464454 + MIR3 SINE MIR 26 202 -6 560 213 16 8 chr4 64864329 64864451 -137463896 - MER7A DNA MER2_type -225 121 1 956 227 42 63 chr4 64864452 64864787 -137463560 - L1M4c LINE L1 -4725 1659 1332 261 260 39 39 chr4 64864900 64864977 -137463370 + HAL1 LINE L1 780 856 -1651 565 272 52 85 chr4 64864977 64865341 -137463006 - MLT1E3 LTR MaLR 0 624 273 1062 166 16 5 chr4 64865535 64865722 -137462625 + MER5A DNA MER1_type 1 189 0 639 258 48 0 chr4 64865730 64865897 -137462450 - MER5B DNA MER1_type 0 178 4 734 271 23 18 chr4 64866309 64866530 -137461817 + MIR SINE MIR 14 235 -27 2127 129 73 42 chr4 64866706 64867116 -137461231 - MSTA LTR MaLR 0 428 6 208 206 14 55 chr4 64867121 64867194 -137461153 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 928 280 235 32 chr4 64867220 64868123 -137460224 - L2 LINE L2 -70 3243 2143 2187 127 19 35 chr4 64868325 64868695 -137459652 - THE1B LTR MaLR 0 364 1 414 328 61 82 chr4 64869366 64869842 -137458505 + MLT1K LTR MaLR 123 588 0 2099 146 0 0 chr4 64871446 64871754 -137456593 + AluSx SINE Alu 3 310 -2 645 317 96 24 chr4 64872268 64872687 -137455660 - LTR16A1 LTR ERVL 0 457 9 24 0 0 0 chr4 64873735 64873759 -137454588 + AT_rich Low_complexity Low_complexity 1 24 0 2782 29 0 0 chr4 64874002 64874313 -137454034 - AluYa5 SINE Alu 0 311 1 814 268 34 97 chr4 64874371 64874785 -137453562 - MLT1B LTR MaLR -2 388 1 5505 150 44 6 chr4 64875943 64876697 -137451650 + L1PB1 LINE L1 4544 5268 -883 2046 135 0 10 chr4 64876697 64877001 -137451346 + AluSg SINE Alu 1 301 -9 5505 150 44 6 chr4 64877001 64877778 -137450569 + L1PB1 LINE L1 5268 6128 -23 7972 46 6 0 chr4 64877910 64879658 -137448689 + L1PA4 LINE L1 4402 6154 -1 1051 273 57 24 chr4 64879732 64880281 -137448066 - L1M4 LINE L1 -1120 5026 4460 235 292 0 0 chr4 64880312 64880384 -137447963 - L1M4 LINE L1 -1797 4349 4278 25088 78 7 6 chr4 64880438 64883884 -137444463 + L1P LINE L1 555 4005 -2141 260 302 0 0 chr4 64884127 64884190 -137444157 - HERVL LTR ERVL -1462 4192 4130 335 326 98 35 chr4 64884203 64884488 -137443859 - HERVL LTR ERVL -1188 3808 3506 407 300 17 0 chr4 64884710 64884830 -137443517 - LTR16A1 LTR ERVL -331 126 5 214 324 83 28 chr4 64886525 64886633 -137441714 + MIR SINE MIR 25 138 -70 673 330 26 0 chr4 64886728 64886961 -137441386 + MIR SINE MIR 1 239 -23 2212 118 0 3 chr4 64887159 64887463 -137440884 - AluSx SINE Alu -9 303 1 21 0 0 0 chr4 64887515 64887536 -137440811 + AT_rich Low_complexity Low_complexity 1 21 0 761 296 86 47 chr4 64887705 64888043 -137440304 + MLT1J LTR MaLR 117 467 -44 24 0 0 0 chr4 64888966 64888990 -137439357 + AT_rich Low_complexity Low_complexity 1 24 0 2067 134 7 0 chr4 64889913 64890211 -137438136 - AluSx SINE Alu -12 300 1 354 23 0 0 chr4 64890392 64890435 -137437912 + (TG)n Simple_repeat Simple_repeat 2 44 0 1836 164 3 0 chr4 64890750 64891036 -137437311 + AluSx SINE Alu 1 287 -25 726 255 143 21 chr4 64891059 64891414 -137436933 + MLT1E2 LTR MaLR 1 441 -185 425 232 120 24 chr4 64891518 64891643 -137436704 + L2 LINE L2 3171 3307 -6 1756 189 0 7 chr4 64891852 64892159 -137436188 + AluJb SINE Alu 1 305 -7 817 248 0 43 chr4 64892204 64892414 -137435933 + L1PB4 LINE L1 2 202 -6647 12283 195 34 43 chr4 64892416 64896776 -137431571 + L1PB4 LINE L1 2458 6859 0 51 65 0 0 chr4 64896779 64896872 -137431475 + AT_rich Low_complexity Low_complexity 1 93 0 1351 244 41 35 chr4 64897778 64898241 -137430106 + MLT1D LTR MaLR 31 496 -9 294 269 0 51 chr4 64900299 64900377 -137427970 - L2 LINE L2 -1 3312 3239 262 286 34 27 chr4 64900645 64900754 -137427593 + MIR SINE MIR 42 145 -63 424 211 35 26 chr4 64901109 64901223 -137427124 - L1MC1 LINE L1 -1 6332 6218 277 193 96 139 chr4 64901232 64901317 -137427030 - MER112 DNA MER1_type -78 182 95 273 57 0 0 chr4 64901317 64901352 -137426995 + (TG)n Simple_repeat Simple_repeat 1 35 0 277 193 96 139 chr4 64901352 64901453 -137426894 - MER112 DNA MER1_type -165 95 4 184 389 48 12 chr4 64901659 64901826 -137426521 - L2 LINE L2 -587 2727 2555 1722 149 98 20 chr4 64902018 64902366 -137425981 - THE1C LTR MaLR 0 375 1 28 0 0 0 chr4 64902444 64902472 -137425875 + AT_rich Low_complexity Low_complexity 1 28 0 274 359 14 35 chr4 64903130 64903274 -137425073 + MIR SINE MIR 20 158 -67 2095 122 0 3 chr4 64903538 64903842 -137424505 - AluSg SINE Alu -4 306 4 26 64 0 0 chr4 64905744 64905791 -137422556 + AT_rich Low_complexity Low_complexity 1 47 0 1272 258 43 6 chr4 64906631 64906953 -137421394 - MSTD LTR MaLR -62 334 1 182 347 40 0 chr4 64906953 64907028 -137421319 - MER5A DNA MER1_type -110 79 2 491 348 34 0 chr4 64909789 64909967 -137418380 - MIR SINE MIR -2 260 77 593 278 60 63 chr4 64910207 64910541 -137417806 - MLT1J1 LTR MaLR -21 425 93 341 265 23 23 chr4 64911072 64911204 -137417143 + (TATATG)n Simple_repeat Simple_repeat 4 135 0 876 325 90 8 chr4 64912059 64912209 -137416138 - MLT1I LTR MaLR 0 409 273 720 183 35 104 chr4 64912209 64912439 -137415908 - MER20 DNA MER1_type -2 217 4 876 325 90 8 chr4 64912439 64912666 -137415681 - MLT1I LTR MaLR -136 273 1 27 0 0 0 chr4 64912812 64912839 -137415508 + AT_rich Low_complexity Low_complexity 1 27 0 257 336 36 15 chr4 64913020 64913157 -137415190 - MIR SINE MIR -71 191 52 22 0 0 0 chr4 64913414 64913436 -137414911 + AT_rich Low_complexity Low_complexity 1 22 0 2167 173 111 28 chr4 64913616 64914074 -137414273 + MLT2B2 LTR ERVL 20 515 0 299 164 0 0 chr4 64914480 64914535 -137413812 - MLT2B1 LTR ERVL -2 518 464 709 173 8 8 chr4 64914552 64914679 -137413668 + MLT2B1 LTR ERVL 77 203 -317 * 1090 227 49 8 chr4 64914663 64915114 -137413233 - MLT2B1 LTR ERVL -25 495 1 2361 185 68 37 chr4 64915246 64915330 -137413017 + L1MB7 LINE L1 5561 5641 -543 1850 154 20 23 chr4 64915330 64915674 -137412673 - MER2 DNA MER2_type 0 344 2 2361 185 68 37 chr4 64915674 64916161 -137412186 + L1MB7 LINE L1 5641 6150 -34 433 54 33 43 chr4 64916914 64917006 -137411341 + (TA)n Simple_repeat Simple_repeat 1 91 0 356 328 92 0 chr4 64917186 64917317 -137411030 - MIR SINE MIR -91 171 29 1780 102 7 21 chr4 64917888 64918173 -137410174 + L1PA3 LINE L1 5875 6155 0 237 155 136 48 chr4 64918757 64918860 -137409487 - LTR41 LTR ERVL -20 753 642 556 250 0 15 chr4 64919538 64919674 -137408673 + LTR41 LTR ERVL 32 165 -608 430 294 4 39 chr4 64919893 64920124 -137408223 + L1ME LINE L1 564 786 -5284 432 271 58 18 chr4 64920138 64920402 -137407945 + L1M4 LINE L1 1441 1844 -5103 22 0 0 0 chr4 64920414 64920436 -137407911 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr4 64920483 64920519 -137407828 + AT_rich Low_complexity Low_complexity 1 36 0 2098 271 109 24 chr4 64920583 64921331 -137407016 + L1M4 LINE L1 1966 2823 -4134 531 45 0 0 chr4 64921331 64921397 -137406950 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 2098 271 109 24 chr4 64921397 64921872 -137406475 + L1M4 LINE L1 2823 3256 -3701 1020 276 63 14 chr4 64921968 64922395 -137405952 + L1M4 LINE L1 5269 5716 -1241 256 143 0 0 chr4 64922393 64922435 -137405912 + L1ME LINE L1 5853 5894 -272 * 330 250 0 40 chr4 64922472 64922572 -137405775 - L1ME1 LINE L1 -32 6134 6039 1814 199 14 8 chr4 64922572 64922928 -137405419 + MER65C LTR ERV1 1 358 -103 294 178 0 0 chr4 64922965 64923027 -137405320 + Alu SINE Alu 243 295 -6 803 263 20 43 chr4 64923052 64923353 -137404994 + L1M4 LINE L1 3842 4135 -2011 * 25473 50 3 1 chr4 64923326 64927318 -137401029 - L1PA5 LINE L1 -5 6149 2149 7217 74 9 2 chr4 64927318 64928293 -137400054 + L1P LINE L1 958 1939 -4207 222 377 9 44 chr4 64929083 64929197 -137399150 - MIR3 SINE MIR -93 115 6 21 82 0 0 chr4 64929289 64929338 -137399009 + AT_rich Low_complexity Low_complexity 1 49 0 23 0 0 0 chr4 64929455 64929478 -137398869 + AT_rich Low_complexity Low_complexity 1 23 0 231 186 0 17 chr4 64930676 64930735 -137397612 - L1MCa LINE L1 -4362 2064 2007 231 175 35 18 chr4 64930753 64930810 -137397537 - L1MCa LINE L1 -4363 2063 2006 235 253 46 0 chr4 64930831 64930918 -137397429 + L1MC4 LINE L1 6615 6705 -1337 241 212 24 12 chr4 64930938 64931023 -137397324 - L1MC4 LINE L1 -1339 6703 6618 353 171 0 29 chr4 64931110 64931180 -137397167 - AluJ/FLAM SINE Alu -218 84 17 1926 156 10 0 chr4 64931254 64931549 -137396798 - AluSx SINE Alu -14 298 1 188 311 89 59 chr4 64931860 64931995 -137396352 - MIR SINE MIR -94 168 30 288 326 37 21 chr4 64932043 64932230 -137396117 + HAL1 LINE L1 8 197 -2310 341 346 75 18 chr4 64932348 64932576 -137395771 + HAL1 LINE L1 376 616 -1891 593 181 0 0 chr4 64932780 64932896 -137395451 - L1MA9 LINE L1 0 6312 6197 675 281 48 63 chr4 64932903 64932982 -137395365 - L1MEc LINE L1 -3943 2620 2541 1692 165 17 0 chr4 64932982 64933273 -137395074 - AluJb SINE Alu -11 301 6 675 281 48 63 chr4 64933273 64933781 -137394566 - L1MEc LINE L1 -4022 2541 2042 21 95 0 0 chr4 64934012 64934075 -137394272 + AT_rich Low_complexity Low_complexity 1 63 0 229 344 16 36 chr4 64934075 64934267 -137394080 - L1MEc LINE L1 -4536 1848 1661 248 259 0 0 chr4 64934268 64934326 -137394021 - Tigger3(Golem) DNA MER2_type 0 3038 2981 280 185 215 0 chr4 64934509 64934574 -137393773 - MLT1E1 LTR MaLR -545 109 31 2024 257 59 82 chr4 64934638 64934701 -137393646 + HAL1 LINE L1 894 957 -1550 2002 13 0 0 chr4 64934701 64934933 -137393414 + L1PA2 LINE L1 5924 6155 0 2024 257 59 82 chr4 64934933 64935524 -137392823 + HAL1 LINE L1 957 1560 -947 3827 150 96 27 chr4 64935524 64936297 -137392050 - LTR1B LTR ERV1 0 826 1 2024 257 59 82 chr4 64936297 64937172 -137391175 + HAL1 LINE L1 1560 2389 -118 1670 228 11 3 chr4 64937229 64937585 -137390762 - MLT1A1 LTR MaLR -4 361 3 213 326 116 50 chr4 64937802 64938044 -137390303 + L2 LINE L2 2708 2965 -349 240 381 64 30 chr4 64938230 64938466 -137389881 + L2 LINE L2 2450 2693 -621 1879 165 3 0 chr4 64938722 64939031 -137389316 - AluSx SINE Alu -2 310 1 398 298 143 25 chr4 64939148 64939309 -137389038 + MER5A DNA MER1_type 9 188 -1 349 341 92 18 chr4 64939853 64940017 -137388330 + MLT1K LTR MaLR 75 250 -338 476 282 41 73 chr4 64940048 64940063 -137388284 - MER58C DNA MER1_type -2207 213 199 369 59 0 0 chr4 64940063 64940114 -137388233 - L1PA3 LINE L1 0 6155 6105 476 282 41 73 chr4 64940114 64940318 -137388029 - MER58C DNA MER1_type -2221 199 1 254 262 47 37 chr4 64940477 64940584 -137387763 + MLT1K LTR MaLR 481 588 0 26 82 0 0 chr4 64940985 64941046 -137387301 + AT_rich Low_complexity Low_complexity 1 61 0 432 287 21 21 chr4 64941661 64941804 -137386543 - MIR3 SINE MIR -41 167 25 309 246 0 14 chr4 64943829 64943898 -137384449 - L2 LINE L2 0 3313 3246 260 274 59 59 chr4 64944842 64944995 -137383352 - L2 LINE L2 0 3313 3161 285 98 0 0 chr4 64946460 64946501 -137381846 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 195 42 0 0 chr4 64947245 64947269 -137381078 + (TA)n Simple_repeat Simple_repeat 1 24 0 473 280 115 19 chr4 64947296 64947453 -137380894 + MER5B DNA MER1_type 5 176 -2 1496 110 0 39 chr4 64948152 64948407 -137379940 - L1MA3 LINE L1 -106 6199 5955 * 3597 162 5 11 chr4 64948406 64949433 -137378914 - L1MA3 LINE L1 -631 5674 4652 811 335 63 55 chr4 64949439 64950039 -137378308 + L1M3d LINE L1 1657 2261 -5225 297 306 32 70 chr4 64950098 64950284 -137378063 + L1M3d LINE L1 2115 2293 -5193 2068 246 70 8 chr4 64950408 64951067 -137377280 + L1M3d LINE L1 2271 2970 -4516 827 128 88 0 chr4 64951071 64951196 -137377151 + AluSx SINE Alu 1 136 -176 36 38 0 50 chr4 64951210 64951290 -137377057 + AT_rich Low_complexity Low_complexity 1 76 0 1255 137 0 0 chr4 64951290 64951465 -137376882 + AluSx SINE Alu 117 291 -21 1462 259 63 13 chr4 64951481 64952796 -137375551 + L1M3d LINE L1 2658 4035 -3530 389 267 17 0 chr4 64952897 64953013 -137375334 + L1M3d LINE L1 4045 4162 -3403 2302 145 58 29 chr4 64953013 64953462 -137374885 + L1MB1 LINE L1 5340 5801 -367 292 197 51 26 chr4 64953473 64953590 -137374757 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 1702 187 51 13 chr4 64953601 64953975 -137374372 + L1MB1 LINE L1 5775 6162 -6 276 233 58 0 chr4 64954019 64954105 -137374242 + MIR SINE MIR 136 226 -36 37 23 0 0 chr4 64954119 64954163 -137374184 + AT_rich Low_complexity Low_complexity 1 44 0 1620 201 0 10 chr4 64954388 64954686 -137373661 - AluJo SINE Alu -16 296 2 455 154 0 0 chr4 64954747 64954825 -137373522 - L1PB3 LINE L1 -3 6151 6074 374 237 122 8 chr4 64955015 64955146 -137373201 + MIR3 SINE MIR 36 181 -27 214 310 114 74 chr4 64957487 64957922 -137370425 + L2 LINE L2 2716 3263 -50 327 281 11 0 chr4 64957946 64958035 -137370312 + GA-rich Low_complexity Low_complexity 3 92 0 247 252 48 39 chr4 64958672 64958775 -137369572 - L1ME LINE L1 -376 5745 5642 515 232 67 67 chr4 64959839 64960003 -137368344 - MER63B DNA MER1_type -266 170 7 2033 134 3 7 chr4 64960145 64960450 -137367897 + AluSx SINE Alu 1 304 -8 943 238 25 52 chr4 64960565 64960915 -137367432 - L1ME2 LINE L1 -9 6155 5814 308 253 48 82 chr4 64960929 64961075 -137367272 - L1MC4 LINE L1 0 8042 7902 * 314 301 0 0 chr4 64961062 64961155 -137367192 - L1MC4 LINE L1 -1340 6702 6610 238 273 77 21 chr4 64961161 64961355 -137366992 - L1MC4 LINE L1 -145 7897 7693 1762 223 46 16 chr4 64961402 64962008 -137366339 - L1ME2 LINE L1 -346 5818 5196 33487 64 6 3 chr4 64962049 64966407 -137361940 + L1P LINE L1 9 4378 -1768 242 324 19 9 chr4 64966624 64966732 -137361615 - MER103 DNA DNA -56 110 2 1842 139 11 7 chr4 64967544 64967864 -137360483 - AluSx SINE Alu 0 321 1 230 397 16 33 chr4 64969763 64969884 -137358463 + MIR3 SINE MIR 3 121 -87 1213 204 3 49 chr4 64970056 64970340 -137358007 + AluJo SINE Alu 1 271 -41 405 109 0 0 chr4 64970345 64970409 -137357938 + (GA)n Simple_repeat Simple_repeat 2 65 0 1044 102 0 32 chr4 64970409 64970595 -137357752 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chr4 64971816 64971837 -137356510 + AT_rich Low_complexity Low_complexity 1 21 0 189 387 0 0 chr4 64971934 64972009 -137356338 - L2 LINE L2 -295 2977 2903 237 329 101 0 chr4 64972012 64972091 -137356256 - L2 LINE L2 -32 3240 3154 201 121 0 0 chr4 64972213 64972246 -137356101 + (TG)n Simple_repeat Simple_repeat 1 33 0 342 0 0 0 chr4 64973549 64973587 -137354760 + (CA)n Simple_repeat Simple_repeat 2 39 0 985 311 91 37 chr4 64974138 64974529 -137353818 - L2 LINE L2 0 3313 2944 637 188 8 23 chr4 64974529 64974657 -137353690 + FLAM_A SINE Alu 3 128 -5 985 311 91 37 chr4 64974657 64975073 -137353274 - L2 LINE L2 -369 2944 2452 292 217 120 22 chr4 64975218 64975310 -137353037 - L2 LINE L2 -4 3268 3168 200 257 27 81 chr4 64975383 64975457 -137352890 - L2 LINE L2 -15 3298 3229 22 0 0 0 chr4 64975943 64975965 -137352382 + AT_rich Low_complexity Low_complexity 1 22 0 189 220 136 0 chr4 64977958 64978017 -137350330 + L2 LINE L2 1276 1342 -1972 578 277 22 105 chr4 64978415 64978881 -137349466 + L2 LINE L2 2636 3059 -213 868 320 116 30 chr4 64979148 64979883 -137348464 + L2 LINE L2 2504 3304 -9 270 231 46 0 chr4 64979926 64979991 -137348356 + L2 LINE L2 1275 1342 -1972 497 259 68 38 chr4 64980020 64980286 -137348061 + LTR33 LTR ERVL 15 288 -233 374 285 81 8 chr4 64980434 64980557 -137347790 + L2 LINE L2 1372 1503 -1811 596 173 16 8 chr4 64980568 64980695 -137347652 + Charlie5 DNA MER1_type 1 128 -2484 659 238 53 0 chr4 64980701 64980983 -137347364 + Charlie5 DNA MER1_type 2243 2539 -73 1365 232 30 3 chr4 64980983 64981162 -137347185 - AluJo SINE Alu -3 309 117 366 23 0 0 chr4 64981162 64981205 -137347142 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1365 232 30 3 chr4 64981205 64981322 -137347025 - AluJo SINE Alu -195 117 5 444 208 151 0 chr4 64981340 64981446 -137346901 - FLAM_C SINE Alu -21 122 1 246 268 0 0 chr4 64981449 64981531 -137346816 + Charlie5 DNA MER1_type 2543 2624 0 2802 298 110 39 chr4 64981531 64982586 -137345761 + L2 LINE L2 1507 2704 -609 2207 43 54 4 chr4 64982586 64982865 -137345482 - AluY SINE Alu -18 293 1 2802 298 110 39 chr4 64982865 64983336 -137345011 + L2 LINE L2 2704 3140 -173 355 288 45 0 chr4 65033342 65033474 -137294873 + LTR16C LTR ERVL 324 461 -30 203 171 0 0 chr4 65033485 65033526 -137294821 + T-rich Low_complexity Low_complexity 1 41 0 1928 139 3 3 chr4 65034626 65034927 -137293420 - AluSc SINE Alu -8 301 1 17088 40 4 0 chr4 65034937 65037815 -137290532 - L1PA4 LINE L1 0 6155 3267 17284 48 3 1 chr4 65037815 65039981 -137288366 + L1P LINE L1 802 2973 -3173 2061 201 5 110 chr4 65040003 65040620 -137287727 + MLT2B3 LTR ERVL 3 554 0 1232 233 108 95 chr4 65042126 65042642 -137285705 + MLT1E LTR MaLR 68 590 -3 381 288 70 82 chr4 65043637 65043967 -137284380 + MLT1I LTR MaLR 58 383 -26 305 304 29 0 chr4 65044310 65044412 -137283935 + L2 LINE L2 3204 3308 -5 220 163 20 20 chr4 65045899 65045948 -137282399 + GA-rich Low_complexity Low_complexity 1 49 0 260 304 141 0 chr4 65046993 65047085 -137281262 + MIR SINE MIR 25 129 -133 191 114 29 0 chr4 65047481 65047516 -137280831 + GA-rich Low_complexity Low_complexity 2 37 0 423 0 0 0 chr4 65048063 65048110 -137280237 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 1538 187 0 41 chr4 65048116 65048410 -137279937 - AluJo SINE Alu -30 282 1 1158 188 163 4 chr4 65048512 65048775 -137279572 + AluJb SINE Alu 5 305 0 818 131 0 0 chr4 65049096 65049226 -137279121 - L1PA16 LINE L1 -1 6165 6036 326 42 21 0 chr4 65049927 65049975 -137278372 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 1773 164 0 0 chr4 65049975 65050255 -137278092 - AluJb SINE Alu -32 280 1 1137 238 42 42 chr4 65050879 65051211 -137277136 + MLT1C LTR MaLR 136 467 0 304 131 0 0 chr4 65051214 65051261 -137277086 - L1MC4a LINE L1 -526 7282 7200 571 224 0 0 chr4 65051298 65051405 -137276942 - MLT1F1 LTR MaLR -460 107 1 1533 236 92 18 chr4 65051405 65051849 -137276498 - L1MD3 LINE L1 -717 7278 6802 2006 258 115 63 chr4 65051849 65053074 -137275273 - L1MC3 LINE L1 -1155 7425 6126 728 271 6 0 chr4 65053074 65053244 -137275103 - FAM SINE Alu -4 171 1 2006 258 115 63 chr4 65053244 65053327 -137275020 - L1MC3 LINE L1 -2454 6126 6049 1959 247 58 14 chr4 65053339 65054000 -137274347 - L1MC3 LINE L1 -1032 5909 5220 281 168 21 21 chr4 65054021 65054116 -137274231 + (TA)n Simple_repeat Simple_repeat 1 95 0 947 266 61 71 chr4 65054283 65054488 -137273859 - L1MC3 LINE L1 -4651 2471 2265 1654 204 0 10 chr4 65054488 65054802 -137273545 - AluJo SINE Alu -1 311 1 947 266 61 71 chr4 65054802 65055797 -137272550 - L1MC3 LINE L1 -4857 2265 1049 250 258 32 24 chr4 65055795 65055919 -137272428 - L1MC3 LINE L1 -5269 1153 1029 * 411 345 68 40 chr4 65056296 65056548 -137271799 - L1MC3 LINE L1 -5750 672 414 3770 216 34 25 chr4 65056639 65058023 -137270324 - L1MB7 LINE L1 -19 6165 4769 2026 147 50 8 chr4 65058023 65058383 -137269964 + THE1C LTR MaLR 1 375 0 2399 98 5 120 chr4 65058383 65058832 -137269515 + THE1C-int LTR MaLR 1 397 -1183 523 237 0 30 chr4 65059199 65059334 -137269013 - LTR67 LTR ERVL 0 557 427 2073 251 19 19 chr4 65060698 65061229 -137267118 - MLT1F LTR MaLR 0 542 12 2738 100 62 7 chr4 65061328 65061368 -137266979 - MLT2A1 LTR ERVL 0 444 408 405 0 0 0 chr4 65061368 65061413 -137266934 + (TA)n Simple_repeat Simple_repeat 1 45 0 2738 100 62 7 chr4 65061413 65061793 -137266554 - MLT2A1 LTR ERVL -36 408 1 24 77 0 0 chr4 65062048 65062100 -137266247 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr4 65062504 65062525 -137265822 + AT_rich Low_complexity Low_complexity 1 21 0 635 140 44 0 chr4 65062537 65062651 -137265696 + L1PA13 LINE L1 6043 6161 -2 1574 186 3 3 chr4 65063816 65064125 -137264222 + AluJb SINE Alu 1 309 0 522 370 59 3 chr4 65064660 65064965 -137263382 - L2 LINE L2 -594 2720 2399 8164 37 7 0 chr4 65065504 65067268 -137261079 + L1PA4 LINE L1 4371 6151 -4 572 269 72 36 chr4 65067444 65067693 -137260654 - L1ME1 LINE L1 -18 6148 5891 192 77 0 0 chr4 65067732 65067758 -137260589 + (CA)n Simple_repeat Simple_repeat 1 26 0 30 0 0 0 chr4 65068228 65068258 -137260089 + AT_rich Low_complexity Low_complexity 1 30 0 1873 155 88 37 chr4 65068649 65068752 -137259595 + MSTA LTR MaLR 1 97 -331 2204 74 0 20 chr4 65068752 65069048 -137259299 - AluY SINE Alu -5 306 17 1873 155 88 37 chr4 65069048 65069351 -137258996 + MSTA LTR MaLR 97 428 0 271 154 0 0 chr4 65069916 65069955 -137258392 + MLT2B2 LTR ERVL 359 397 -118 233 277 0 0 chr4 65069980 65070027 -137258320 - L2 LINE L2 -11 3261 3215 2065 113 61 0 chr4 65071205 65071498 -137256849 - AluSx SINE Alu -1 311 1 23 0 0 0 chr4 65072745 65072768 -137255579 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 65072866 65072890 -137255457 + AT_rich Low_complexity Low_complexity 1 24 0 736 258 72 5 chr4 65073211 65073420 -137254927 + MIR SINE MIR 40 262 0 200 292 15 46 chr4 65073425 65073490 -137254857 + MIR SINE MIR 54 116 -92 2161 119 3 0 chr4 65073704 65074015 -137254332 + AluSx SINE Alu 1 312 0 401 296 37 37 chr4 65074255 65074390 -137253957 - MIR SINE MIR -108 154 20 352 278 53 71 chr4 65074923 65075092 -137253255 - MLT1J2 LTR MaLR -44 406 241 365 252 104 17 chr4 65075221 65075336 -137253011 - MLT1J1 LTR MaLR -313 133 9 577 309 81 13 chr4 65075556 65075792 -137252555 + MIR SINE MIR 11 262 0 600 188 8 45 chr4 65076583 65076716 -137251631 - MLT1B LTR MaLR -262 128 1 2058 113 0 20 chr4 65077353 65077655 -137250692 + AluSg SINE Alu 1 296 -14 282 267 0 0 chr4 65079530 65079590 -137248757 - MER63 DNA MER1_type -87 749 690 563 253 41 0 chr4 65079677 65079823 -137248524 + MER58B DNA MER1_type 190 341 0 24 32 0 0 chr4 65080501 65080532 -137247815 + AT_rich Low_complexity Low_complexity 1 31 0 221 196 18 0 chr4 65081316 65081372 -137246975 + (TATG)n Simple_repeat Simple_repeat 3 59 0 682 302 33 49 chr4 65081392 65081697 -137246650 - MLT1K LTR MaLR -166 422 123 208 171 24 0 chr4 65081920 65081961 -137246386 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 190 302 32 0 chr4 65083293 65083356 -137244991 + MIR SINE MIR 124 188 -74 212 167 0 0 chr4 65084382 65084424 -137243923 + (TTA)n Simple_repeat Simple_repeat 2 43 0 2364 87 3 0 chr4 65084699 65084999 -137243348 + AluSp SINE Alu 1 301 -12 1365 198 8 0 chr4 65085191 65085434 -137242913 + AluJb SINE Alu 27 271 -41 286 81 0 0 chr4 65086964 65087001 -137241346 + AluJb SINE Alu 254 290 -12 189 0 0 0 chr4 65087735 65087756 -137240591 + (A)n Simple_repeat Simple_repeat 1 21 0 2106 120 16 0 chr4 65087773 65088081 -137240266 - AluSq SINE Alu 0 313 1 216 272 158 9 chr4 65089121 65089235 -137239112 - MIR SINE MIR -56 206 76 1949 149 3 0 chr4 65089540 65089842 -137238505 - AluSx SINE Alu -9 303 1 23 68 0 0 chr4 65090202 65090246 -137238101 + AT_rich Low_complexity Low_complexity 1 44 0 1593 245 18 18 chr4 65090259 65090655 -137237692 - MSTD LTR MaLR 0 396 1 1691 112 139 0 chr4 65091106 65091373 -137236974 - AluSq SINE Alu -9 304 1 2306 151 40 21 chr4 65091605 65092029 -137236318 - MSTB1 LTR MaLR 0 432 1 2083 122 0 0 chr4 65092500 65092778 -137235569 + AluSx SINE Alu 9 286 -26 1743 243 48 38 chr4 65092914 65093524 -137234823 + MLT1E3 LTR MaLR 6 610 -14 252 345 14 7 chr4 65093900 65094045 -137234302 + L1M4b LINE L1 1327 1472 -5387 21 36 0 0 chr4 65094764 65094792 -137233555 + AT_rich Low_complexity Low_complexity 1 28 0 283 330 11 11 chr4 65095552 65095643 -137232704 + MIR SINE MIR 20 110 -152 637 228 17 136 chr4 65096573 65096873 -137231474 + MIR SINE MIR 1 260 -2 191 328 31 0 chr4 65097545 65097609 -137230738 - L2 LINE L2 -4 3309 3244 1851 231 20 24 chr4 65097903 65098362 -137229985 + MLT1C LTR MaLR 11 467 0 607 295 28 28 chr4 65099279 65099475 -137228872 + MIR SINE MIR 13 211 -51 4999 139 50 5 chr4 65099475 65101152 -137227195 + L1PA16 LINE L1 4445 6166 0 607 295 28 28 chr4 65101152 65101172 -137227175 + MIR SINE MIR 210 229 -33 1383 275 108 12 chr4 65101173 65101690 -137226657 + MER69 DNA AcHobo 2 568 -658 1050 224 171 45 chr4 65101677 65102060 -137226287 + MER69 DNA AcHobo 1999 2453 -73 * 1958 126 3 3 chr4 65102060 65102354 -137225993 - AluSc SINE Alu -15 294 1 1050 224 171 45 chr4 65102354 65102439 -137225908 + MER69 DNA AcHobo 2453 2526 0 30 45 0 0 chr4 65103539 65103583 -137224764 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chr4 65103772 65103804 -137224543 + AT_rich Low_complexity Low_complexity 1 32 0 205 214 24 0 chr4 65103855 65103897 -137224450 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 2317 100 0 0 chr4 65104376 65104675 -137223672 + AluSx SINE Alu 1 299 -13 679 249 32 60 chr4 65104718 65104967 -137223380 + MER31-int LTR ERV1 2825 3066 -1870 328 296 0 0 chr4 65105167 65105248 -137223099 + MER5B DNA MER1_type 1 81 -97 803 267 45 68 chr4 65105526 65106176 -137222171 + MER31-int LTR ERV1 3337 4057 -879 902 211 98 36 chr4 65106509 65106845 -137221502 + LTR37A LTR ERV1 19 375 -51 1632 210 25 25 chr4 65107847 65108200 -137220147 + MLT1A1 LTR MaLR 13 365 0 571 246 66 89 chr4 65108216 65108498 -137219849 - L1ME4a LINE L1 -147 5974 5702 3570 163 30 11 chr4 65108498 65109156 -137219191 - LTR51 LTR ERV1 0 671 1 571 246 66 89 chr4 65109156 65109268 -137219079 - L1ME4a LINE L1 -419 5702 5589 619 330 149 23 chr4 65109398 65110150 -137218197 + L2 LINE L2 1355 2201 -1113 372 331 60 27 chr4 65110250 65110434 -137217913 + MIR SINE MIR 70 259 -3 318 250 19 39 chr4 65110565 65110669 -137217678 - MLT1J1 LTR MaLR 0 446 345 289 209 30 0 chr4 65110892 65110959 -137217388 - MLT1J1 LTR MaLR 0 446 378 233 271 164 64 chr4 65111010 65111150 -137217197 + MIR3 SINE MIR 32 185 -23 1324 286 59 36 chr4 65111419 65111969 -137216378 + MLT1F1 LTR MaLR 3 566 -1 273 245 49 39 chr4 65112299 65112401 -137215946 - L1ME4a LINE L1 -18 6103 6001 232 239 336 9 chr4 65112467 65112580 -137215767 - MIR SINE MIR 0 262 113 293 239 65 43 chr4 65113567 65113659 -137214688 + L2 LINE L2 3184 3277 -36 235 278 285 7 chr4 65113644 65113788 -137214559 - MIR SINE MIR -32 230 47 * 219 211 28 42 chr4 65114509 65114580 -137213767 + CT-rich Low_complexity Low_complexity 1 70 0 212 167 19 0 chr4 65114959 65114974 -137213373 + (TTAA)n Simple_repeat Simple_repeat 2 15 -41 1990 129 11 7 chr4 65114974 65115261 -137213086 + AluSx SINE Alu 1 288 -24 212 167 19 0 chr4 65115261 65115299 -137213048 + (TTAA)n Simple_repeat Simple_repeat 15 56 0 4678 227 52 19 chr4 65115779 65117278 -137211069 + L1M2a LINE L1 2055 3407 -4159 1117 153 0 0 chr4 65117284 65117486 -137210861 + L1MA6 LINE L1 6093 6294 -6 2679 132 9 34 chr4 65118056 65118495 -137209852 + MSTC LTR MaLR 1 428 0 469 326 7 7 chr4 65119785 65119929 -137208418 - L2 LINE L2 0 3313 3170 693 244 83 31 chr4 65119929 65120183 -137208164 - ORSL DNA AcHobo 0 275 9 717 275 173 4 chr4 65120194 65120569 -137207778 - L2 LINE L2 -162 3151 2702 1588 195 85 40 chr4 65120569 65120608 -137207739 + MLT1C LTR MaLR 1 37 -430 2167 99 3 23 chr4 65120608 65120911 -137207436 + AluSx SINE Alu 1 297 -15 1588 195 85 40 chr4 65120911 65121317 -137207030 + MLT1C LTR MaLR 37 466 -1 717 275 173 4 chr4 65121317 65121392 -137206955 - L2 LINE L2 -611 2702 2641 378 276 50 94 chr4 65121413 65121837 -137206510 - LTR16A LTR ERVL -15 435 31 439 288 11 55 chr4 65122042 65122224 -137206123 - MIR3 SINE MIR -40 168 6 744 315 105 3 chr4 65122324 65122629 -137205718 + MLT1J1 LTR MaLR 4 339 -107 258 160 0 0 chr4 65122932 65122982 -137205365 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 21 0 0 0 chr4 65123053 65123074 -137205273 + AT_rich Low_complexity Low_complexity 1 21 0 352 244 159 23 chr4 65124220 65124396 -137203951 + MARNA DNA Mariner 327 526 -60 21 0 0 0 chr4 65124484 65124505 -137203842 + AT_rich Low_complexity Low_complexity 1 21 0 235 204 0 20 chr4 65124525 65124574 -137203773 - L2 LINE L2 -5 3267 3220 1063 94 31 0 chr4 65124578 65124738 -137203609 - HSMAR2 DNA Mariner -4 1298 1134 * 4671 137 3 4 chr4 65124734 65125471 -137202876 - HSMAR2 DNA Mariner -565 737 2 1497 214 43 14 chr4 65125933 65126284 -137202063 - MLT1A1 LTR MaLR 0 365 5 584 263 50 22 chr4 65128075 65128254 -137200093 + MLT1J LTR MaLR 328 511 0 352 328 57 80 chr4 65128391 65128857 -137199490 - L1M4 LINE L1 -442 5736 5272 241 238 0 0 chr4 65129571 65129634 -137198713 + L1MC4 LINE L1 6640 6702 -1340 181 339 0 0 chr4 65130435 65130491 -137197856 - L2 LINE L2 -218 3054 2999 240 286 114 0 chr4 65130738 65130843 -137197504 - MIR3 SINE MIR -9 199 83 404 184 10 0 chr4 65131207 65131305 -137197042 + GA-rich Low_complexity Low_complexity 1 99 0 228 67 0 0 chr4 65131724 65131754 -137196593 + (CCG)n Simple_repeat Simple_repeat 3 32 0 203 233 0 0 chr4 65131773 65131816 -137196531 + (CCG)n Simple_repeat Simple_repeat 2 44 0 21 71 0 0 chr4 65132118 65132160 -137196187 + GC_rich Low_complexity Low_complexity 1 42 0 220 208 0 0 chr4 65132486 65132534 -137195813 + (CAG)n Simple_repeat Simple_repeat 2 49 0 27 0 0 0 chr4 65133757 65133784 -137194563 + GC_rich Low_complexity Low_complexity 1 27 0 224 77 26 0 chr4 65133964 65134003 -137194344 + (TG)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr4 65136868 65136889 -137191458 + AT_rich Low_complexity Low_complexity 1 21 0 1102 215 22 0 chr4 65137633 65137861 -137190486 + Charlie1 DNA MER1_type 6 238 -2523 2042 144 0 3 chr4 65137922 65138247 -137190100 + AluSx SINE Alu 1 312 0 198 0 0 0 chr4 65138268 65138290 -137190057 + (TTA)n Simple_repeat Simple_repeat 3 24 0 5847 58 3 0 chr4 65138293 65139017 -137189330 - L1PA7 LINE L1 -20 6134 5409 308 164 18 0 chr4 65139021 65139076 -137189271 + Charlie1 DNA MER1_type 2705 2760 -1 513 326 96 4 chr4 65139423 65139662 -137188685 + MIR SINE MIR 2 262 0 399 307 98 12 chr4 65144904 65145148 -137183199 - L1ME4a LINE L1 -265 5856 5592 1572 199 0 14 chr4 65145876 65146172 -137182175 + AluJo SINE Alu 1 292 -20 235 231 0 19 chr4 65146697 65146749 -137181598 - MIR SINE MIR -95 113 63 2451 65 0 3 chr4 65146764 65147074 -137181273 - AluY SINE Alu -2 309 1 23 54 0 0 chr4 65147763 65147800 -137180547 + AT_rich Low_complexity Low_complexity 1 37 0 679 250 23 6 chr4 65147977 65148153 -137180194 + MIR SINE MIR 81 259 -3 216 286 32 0 chr4 65148517 65148580 -137179767 - L2 LINE L2 -212 3060 2996 1508 151 26 74 chr4 65149536 65149848 -137178499 - AluJo SINE Alu -15 297 1 540 330 83 25 chr4 65149933 65150257 -137178090 - L2 LINE L2 -343 2971 2629 2304 92 0 13 chr4 65151050 65151364 -137176983 + AluSq SINE Alu 2 311 -2 418 316 102 6 chr4 65151563 65151740 -137176607 + MIR SINE MIR 12 205 -57 576 128 83 0 chr4 65153526 65153635 -137174712 - L1MA5A LINE L1 -1 6296 6179 58 65 0 0 chr4 65155221 65155328 -137173019 + AT_rich Low_complexity Low_complexity 1 107 0 229 200 40 0 chr4 65158300 65158350 -137169997 + L2 LINE L2 3220 3271 -1 1646 201 0 10 chr4 65158433 65158732 -137169615 - AluJo SINE Alu -16 296 1 841 246 5 5 chr4 65159122 65159333 -137169014 - L1MD3 LINE L1 -8 7987 7777 216 326 98 11 chr4 65159868 65159960 -137168387 - L3b LINE CR1 -178 1405 1306 1678 149 4 0 chr4 65159966 65160215 -137168132 - AluSq SINE Alu -63 250 1 1371 186 74 15 chr4 65160859 65161128 -137167219 + AluJo SINE Alu 1 285 -27 254 153 17 0 chr4 65161128 65161187 -137167160 + (TA)n Simple_repeat Simple_repeat 1 60 0 828 147 8 0 chr4 65161773 65161902 -137166445 - AluJb SINE Alu -176 136 7 547 307 6 12 chr4 65163238 65163401 -137164946 + MIR SINE MIR 83 244 -18 550 291 35 87 chr4 65163463 65163536 -137164811 + MIR SINE MIR 21 96 -166 2252 114 0 3 chr4 65163536 65163833 -137164514 - AluSq SINE Alu -17 296 1 550 291 35 87 chr4 65163833 65164013 -137164334 + MIR SINE MIR 96 261 -1 266 245 26 103 chr4 65164648 65164803 -137163544 - L2 LINE L2 -169 3144 3002 191 35 0 35 chr4 65164912 65164941 -137163406 + (TG)n Simple_repeat Simple_repeat 2 29 0 251 349 137 24 chr4 65164948 65165361 -137162986 - L2 LINE L2 -634 2680 2172 2637 93 3 0 chr4 65165361 65165715 -137162632 - THE1A LTR MaLR 0 355 1 251 349 137 24 chr4 65165715 65165920 -137162427 - L2 LINE L2 -1142 2172 1992 2298 100 3 0 chr4 65167223 65167534 -137160813 - AluSq SINE Alu -1 312 1 344 77 19 0 chr4 65169661 65169713 -137158634 + (TG)n Simple_repeat Simple_repeat 2 54 0 280 269 173 0 chr4 65169901 65170005 -137158342 + MIR SINE MIR 89 210 -52 1199 198 15 122 chr4 65171216 65171625 -137156722 - MLT1A1 LTR MaLR 0 365 1 271 267 230 12 chr4 65171956 65172117 -137156230 + L2 LINE L2 3113 3308 -5 26 64 0 0 chr4 65172755 65172802 -137155545 + AT_rich Low_complexity Low_complexity 1 47 0 290 402 88 8 chr4 65173119 65173370 -137154977 + L2 LINE L2 2707 2977 -337 * 432 284 71 43 chr4 65173360 65173571 -137154776 + L2 LINE L2 3097 3313 0 23 0 0 0 chr4 65174049 65174072 -137154275 + AT_rich Low_complexity Low_complexity 1 23 0 252 366 134 38 chr4 65174098 65174360 -137153987 - L2 LINE L2 -5 3267 2981 27 73 0 0 chr4 65177811 65177866 -137150481 + AT_rich Low_complexity Low_complexity 1 55 0 24 0 0 0 chr4 65177958 65177982 -137150365 + AT_rich Low_complexity Low_complexity 1 24 0 271 324 93 0 chr4 65178397 65178505 -137149842 - L2 LINE L2 -3 3310 3193 701 266 77 90 chr4 65180518 65180996 -137147351 - MLT1J LTR MaLR -34 477 6 316 230 106 26 chr4 65181002 65181115 -137147232 + MIR SINE MIR 120 241 -21 21 0 0 0 chr4 65182399 65182420 -137145927 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 65182793 65182821 -137145526 + AT_rich Low_complexity Low_complexity 1 28 0 1940 152 7 3 chr4 65183318 65183615 -137144732 + AluSx SINE Alu 1 298 -14 1635 148 9 71 chr4 65183619 65183943 -137144404 + AluJb SINE Alu 1 304 -8 24 0 0 0 chr4 65184224 65184248 -137144099 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr4 65184885 65184921 -137143426 + AT_rich Low_complexity Low_complexity 1 36 0 336 221 0 0 chr4 65185229 65185306 -137143041 + (CCA)n Simple_repeat Simple_repeat 3 79 0 182 323 62 0 chr4 65185437 65185502 -137142845 - MIR SINE MIR -119 143 75 25 0 0 0 chr4 65186088 65186113 -137142234 + AT_rich Low_complexity Low_complexity 1 25 0 2254 96 0 0 chr4 65188184 65188486 -137139861 - AluSg1 SINE Alu -2 307 6 396 308 111 29 chr4 65190130 65190445 -137137902 + MARNA DNA Mariner 14 354 -232 654 269 73 27 chr4 65190629 65190848 -137137499 + MIR SINE MIR 25 253 -9 395 263 10 0 chr4 65192941 65193040 -137135307 - Charlie8 DNA MER1_type -2173 244 145 268 288 90 11 chr4 65193270 65193491 -137134856 - MER41E LTR ERV1 -204 431 54 34 0 0 0 chr4 65193503 65193537 -137134810 + AT_rich Low_complexity Low_complexity 1 34 0 2195 93 0 3 chr4 65193537 65193827 -137134520 - AluY SINE Alu -22 289 1 634 237 9 28 chr4 65194093 65194304 -137134043 - L1ME2 LINE L1 -6 6158 5952 218 328 0 0 chr4 65194509 65194573 -137133774 - MIR SINE MIR -120 142 79 270 351 53 20 chr4 65194773 65194924 -137133423 - MIR SINE MIR -88 174 19 21 36 0 0 chr4 65194924 65194952 -137133395 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr4 65194968 65195001 -137133346 + AT_rich Low_complexity Low_complexity 1 33 0 452 212 44 36 chr4 65198808 65198945 -137129402 - MLT1J1 LTR MaLR -308 138 1 4836 173 55 47 chr4 65199068 65199198 -137129149 + L1MC2 LINE L1 4690 4817 -1527 1586 166 13 16 chr4 65199198 65199505 -137128842 + L1MC1 LINE L1 6028 6333 0 4836 173 55 47 chr4 65199505 65200949 -137127398 + L1MC2 LINE L1 4817 6271 -73 3257 158 7 14 chr4 65200952 65201509 -137126838 - MER6A DNA MER2_type 0 605 53 204 384 50 44 chr4 65201664 65201823 -137126524 + L3 LINE CR1 1416 1575 -2 464 299 50 25 chr4 65202188 65202389 -137125958 + MIR SINE MIR 57 262 0 2032 237 51 20 chr4 65202446 65202998 -137125349 - MLT1G LTR MaLR -3 587 19 2336 96 3 6 chr4 65203294 65203608 -137124739 - AluSq SINE Alu 0 313 1 207 100 0 0 chr4 65205117 65205147 -137123200 + (CA)n Simple_repeat Simple_repeat 1 30 0 293 250 0 0 chr4 65205296 65205360 -137122987 + MIR3 SINE MIR 142 205 -3 231 216 20 0 chr4 65205696 65205747 -137122600 - Charlie8 DNA MER1_type -2 2415 2364 329 266 168 12 chr4 65207015 65207188 -137121159 - MIR SINE MIR -61 201 2 201 389 12 43 chr4 65207274 65207436 -137120911 - L3 LINE CR1 -1304 273 117 279 54 0 0 chr4 65209262 65209299 -137119048 + (TG)n Simple_repeat Simple_repeat 1 37 0 327 335 112 9 chr4 65209815 65210030 -137118317 + MIR SINE MIR 14 250 -12 2422 36 4 0 chr4 65210568 65210895 -137117452 + AluY SINE Alu 1 328 0 434 294 185 14 chr4 65211857 65212068 -137116279 + MIR SINE MIR 3 249 -13 1796 186 0 0 chr4 65212153 65212448 -137115899 - AluJb SINE Alu -14 298 4 512 215 0 19 chr4 65212498 65212605 -137115742 - AluJb SINE Alu -88 224 120 850 159 0 21 chr4 65212612 65212757 -137115590 - FLAM_C SINE Alu -1 142 1 467 248 97 39 chr4 65212757 65212963 -137115384 + MER2 DNA MER2_type 122 339 -6 371 325 56 67 chr4 65213175 65213443 -137114904 - L2 LINE L2 -194 3078 2814 350 282 279 25 chr4 65213612 65213935 -137114412 - L3 LINE CR1 -1026 551 147 22 35 0 0 chr4 65214667 65214696 -137113651 + AT_rich Low_complexity Low_complexity 1 29 0 454 305 73 13 chr4 65221304 65221455 -137106892 - MIR3 SINE MIR -11 197 38 660 242 88 0 chr4 65224390 65224572 -137103775 + MIR SINE MIR 28 225 -37 28 0 0 0 chr4 65224922 65224950 -137103397 + AT_rich Low_complexity Low_complexity 1 28 0 242 268 247 21 chr4 65225540 65225637 -137102710 + L2 LINE L2 3148 3266 -6 1207 158 27 46 chr4 65225776 65226035 -137102312 + AluJo SINE Alu 38 291 -21 248 221 18 150 chr4 65226041 65226154 -137102193 + MIR SINE MIR 43 140 -68 336 202 0 160 chr4 65226721 65226840 -137101507 + MER102a DNA MER1_type 222 321 -9 30 27 0 0 chr4 65227854 65227891 -137100456 + AT_rich Low_complexity Low_complexity 1 37 0 308 321 143 20 chr4 65228233 65228429 -137099918 + MIR SINE MIR 33 252 -10 25 0 0 0 chr4 65228539 65228564 -137099783 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr4 65228604 65228627 -137099720 + AT_rich Low_complexity Low_complexity 1 23 0 430 360 0 34 chr4 65228712 65228890 -137099457 + MIR SINE MIR 35 206 -56 24 0 0 0 chr4 65228912 65228936 -137099411 + AT_rich Low_complexity Low_complexity 1 24 0 2050 137 3 10 chr4 65229590 65229903 -137098444 - AluSx SINE Alu -1 311 1 191 225 0 0 chr4 65230503 65230543 -137097804 - L2 LINE L2 0 3272 3233 251 311 0 0 chr4 65230565 65230626 -137097721 - L2 LINE L2 -245 3068 3008 198 153 288 0 chr4 65230641 65230700 -137097647 + MIR3 SINE MIR 128 203 -5 323 241 12 118 chr4 65230934 65231104 -137097243 + MIR SINE MIR 78 229 -33 2326 91 3 3 chr4 65231195 65231504 -137096843 - AluSc SINE Alu 0 309 1 384 338 65 14 chr4 65231843 65232118 -137096229 + L1ME4a LINE L1 5711 5999 -122 27 0 0 0 chr4 65233185 65233212 -137095135 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr4 65235909 65235931 -137092416 + AT_rich Low_complexity Low_complexity 1 22 0 201 209 23 0 chr4 65235953 65235996 -137092351 + T-rich Low_complexity Low_complexity 4 47 0 22 35 0 0 chr4 65237062 65237091 -137091256 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 65237182 65237211 -137091136 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr4 65237273 65237302 -137091045 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 65237719 65237740 -137090607 + AT_rich Low_complexity Low_complexity 1 21 0 244 323 43 11 chr4 65239667 65239760 -137088587 - MLT1J LTR MaLR -310 201 106 34 55 0 0 chr4 65240099 65240154 -137088193 + AT_rich Low_complexity Low_complexity 1 55 0 399 291 249 0 chr4 65240911 65241100 -137087247 + MIR SINE MIR 19 254 -8 833 208 13 0 chr4 65241629 65241778 -137086569 + FRAM SINE Alu 1 148 -28 615 96 17 26 chr4 65241782 65241897 -137086450 + (GGAA)n Simple_repeat Simple_repeat 3 116 0 483 18 0 0 chr4 65242310 65242366 -137085981 + (CA)n Simple_repeat Simple_repeat 2 57 0 1239 193 86 52 chr4 65242366 65242692 -137085655 - MER2 DNA MER2_type -7 338 2 354 200 113 0 chr4 65242708 65242788 -137085559 - L1MC4 LINE L1 -1339 6703 6615 370 285 105 12 chr4 65244938 65245110 -137083237 + MIR SINE MIR 49 236 -26 910 190 57 47 chr4 65245140 65245351 -137082996 + Tigger5 DNA MER2_type 3 215 -2108 * 1971 122 22 9 chr4 65245343 65245664 -137082683 + Tigger5 DNA MER2_type 1999 2323 0 564 189 40 27 chr4 65245664 65245812 -137082535 + MER104 DNA Tc2 31 180 0 426 20 0 0 chr4 65246019 65246070 -137082277 + (CA)n Simple_repeat Simple_repeat 2 52 0 3134 175 4 6 chr4 65246070 65246613 -137081734 + MER44D DNA MER2_type 3 599 -6 617 128 0 39 chr4 65246807 65246909 -137081438 + AluJ/FLAM SINE Alu 1 98 -214 2579 205 9 16 chr4 65247145 65247698 -137080649 - MER6A DNA MER2_type -70 535 -15 2208 104 7 0 chr4 65247757 65248056 -137080291 - AluSp SINE Alu -12 301 1 1000 217 9 23 chr4 65248210 65248427 -137079920 + MER20 DNA MER1_type 1 214 -5 225 306 7 109 chr4 65248577 65248724 -137079623 - L2 LINE L2 -195 3077 2946 631 348 91 32 chr4 65249472 65249972 -137078375 - L2 LINE L2 -2 3311 2761 523 101 13 0 chr4 65249972 65250051 -137078296 - MADE1 DNA Mariner 0 80 1 631 348 91 32 chr4 65250051 65250277 -137078070 - L2 LINE L2 -552 2761 2550 1999 129 0 57 chr4 65251445 65251763 -137076584 + AluSx SINE Alu 4 303 -9 189 0 0 0 chr4 65251769 65251790 -137076557 + (CA)n Simple_repeat Simple_repeat 2 22 0 264 277 180 30 chr4 65251866 65252044 -137076303 + MIR SINE MIR 18 220 -42 23 54 0 0 chr4 65252392 65252429 -137075918 + AT_rich Low_complexity Low_complexity 1 37 0 289 349 102 6 chr4 65252453 65252619 -137075728 - MIR SINE MIR -11 251 70 21 36 0 0 chr4 65253283 65253311 -137075036 + AT_rich Low_complexity Low_complexity 1 28 0 1429 207 38 43 chr4 65253432 65253804 -137074543 + MLT1A2 LTR MaLR 1 370 -4 1706 196 71 50 chr4 65253874 65253897 -137074450 - MLT1D LTR MaLR 0 505 484 1942 158 138 12 chr4 65253897 65254309 -137074038 - MLT2C2 LTR ERVL 0 464 1 1706 196 71 50 chr4 65254309 65254780 -137073567 - MLT1D LTR MaLR -21 484 1 298 276 101 16 chr4 65254828 65254958 -137073389 + MIR SINE MIR 29 170 -38 1761 153 40 35 chr4 65255024 65255370 -137072977 - MER7A DNA MER2_type 0 346 1 2212 129 22 25 chr4 65255514 65255878 -137072469 - THE1B LTR MaLR 0 364 2 10916 103 19 1 chr4 65255879 65257431 -137070916 - THE1B-int LTR MaLR 0 1580 1 1951 137 63 26 chr4 65257431 65257782 -137070565 - THE1B LTR MaLR 0 364 1 26 30 0 0 chr4 65258463 65258496 -137069851 + AT_rich Low_complexity Low_complexity 1 33 0 2183 119 0 0 chr4 65258580 65258882 -137069465 + AluSc SINE Alu 1 302 -7 296 291 146 0 chr4 65259099 65259202 -137069145 - L2 LINE L2 -5 3267 3150 251 284 95 60 chr4 65259512 65259628 -137068719 - MIR SINE MIR -126 136 17 193 308 0 0 chr4 65259728 65259780 -137068567 - L2 LINE L2 0 3313 3262 22 0 0 0 chr4 65260056 65260078 -137068269 + AT_rich Low_complexity Low_complexity 1 22 0 315 0 0 0 chr4 65260148 65260183 -137068164 + (TG)n Simple_repeat Simple_repeat 2 36 0 31 44 0 0 chr4 65263017 65263062 -137065285 + AT_rich Low_complexity Low_complexity 1 45 0 1854 186 21 16 chr4 65263721 65264104 -137064243 + MLT2B1 LTR ERVL 3 434 -86 721 100 0 0 chr4 65264104 65264204 -137064143 - LTR12 LTR ERV1 0 714 615 290 253 11 0 chr4 65264206 65264297 -137064050 - LTR30 LTR ERV1 -79 643 552 953 70 169 0 chr4 65264298 65264440 -137063907 - LTR12 LTR ERV1 -430 284 119 283 192 0 0 chr4 65264440 65264492 -137063855 - LTR30 LTR ERV1 -670 52 1 374 152 127 0 chr4 65264492 65264571 -137063776 + MLT2B1 LTR ERVL 427 515 0 333 351 90 26 chr4 65264708 65265087 -137063260 - L1MC/D LINE L1 -2107 5701 5299 21 36 0 0 chr4 65266668 65266696 -137061651 + AT_rich Low_complexity Low_complexity 1 28 0 1794 129 7 45 chr4 65267856 65268166 -137060181 + AluSx SINE Alu 1 298 -14 264 30 0 0 chr4 65268260 65268293 -137060054 + (TG)n Simple_repeat Simple_repeat 1 33 0 221 313 71 20 chr4 65268317 65268416 -137059931 - MER5A DNA MER1_type -84 105 2 250 314 111 20 chr4 65269007 65269160 -137059187 + MIR SINE MIR 86 252 -10 206 390 51 25 chr4 65270257 65270375 -137057972 + L2 LINE L2 3152 3272 0 247 244 26 0 chr4 65270669 65270747 -137057600 + (TA)n Simple_repeat Simple_repeat 1 80 0 255 237 43 0 chr4 65271374 65271467 -137056880 + (TA)n Simple_repeat Simple_repeat 1 97 0 352 306 72 39 chr4 65271493 65271800 -137056547 - L1MC4a LINE L1 -1923 5885 5569 273 220 98 53 chr4 65271868 65272000 -137056347 - L1ME4a LINE L1 -2 6119 5982 22 0 0 0 chr4 65272231 65272253 -137056094 + AT_rich Low_complexity Low_complexity 1 22 0 2098 129 19 40 chr4 65272700 65273072 -137055275 - THE1B LTR MaLR 0 364 1 210 344 16 8 chr4 65273209 65273331 -137055016 + L2 LINE L2 1001 1123 -2191 233 259 136 13 chr4 65273353 65273464 -137054883 + MIR3 SINE MIR 28 158 -50 546 228 57 6 chr4 65273520 65273678 -137054669 - MER103 DNA DNA 0 166 1 2146 81 0 37 chr4 65274639 65274962 -137053385 - AluSq SINE Alu 0 312 1 29 0 0 0 chr4 65274966 65274995 -137053352 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 65275224 65275246 -137053101 + AT_rich Low_complexity Low_complexity 1 22 0 388 346 88 36 chr4 65275404 65275846 -137052501 + L3 LINE CR1 455 919 -658 435 281 0 0 chr4 65275985 65276081 -137052266 + FLAM_A SINE Alu 2 97 -45 323 103 0 17 chr4 65276105 65276163 -137052184 + (TC)n Simple_repeat Simple_repeat 2 58 0 315 0 0 0 chr4 65276173 65276208 -137052139 + (CA)n Simple_repeat Simple_repeat 2 36 0 1592 159 3 59 chr4 65276346 65276667 -137051680 + AluJo SINE Alu 1 303 -9 198 264 19 0 chr4 65276829 65276882 -137051465 + L3 LINE CR1 1207 1260 -317 23 0 0 0 chr4 65278673 65278696 -137049651 + AT_rich Low_complexity Low_complexity 1 23 0 333 297 72 7 chr4 65279473 65279611 -137048736 + MIR SINE MIR 116 262 0 222 203 186 0 chr4 65279661 65279720 -137048627 + L2 LINE L2 3244 3313 0 196 319 0 43 chr4 65279913 65280007 -137048340 - L2 LINE L2 -1 3312 3223 10518 137 22 34 chr4 65280326 65282117 -137046230 + Tigger1 DNA MER2_type 5 1775 -643 1586 118 19 30 chr4 65282114 65282259 -137046088 + Tigger1 DNA MER2_type 2157 2299 -119 * 2172 100 14 0 chr4 65282259 65282549 -137045798 - AluSx SINE Alu -18 294 1 1586 118 19 30 chr4 65282549 65282666 -137045681 + Tigger1 DNA MER2_type 2299 2416 -2 506 115 13 0 chr4 65282682 65282760 -137045587 + MADE1 DNA Mariner 2 80 0 301 300 0 9 chr4 65283031 65283211 -137045136 + (TA)n Simple_repeat Simple_repeat 1 178 0 952 153 0 105 chr4 65283406 65283596 -137044751 - AluJo SINE Alu -133 179 10 700 307 8 0 chr4 65283917 65284174 -137044173 - MIR SINE MIR -2 260 2 237 33 0 0 chr4 65284435 65284465 -137043882 + (TG)n Simple_repeat Simple_repeat 1 30 0 182 317 89 10 chr4 65284925 65285026 -137043321 + MIR SINE MIR 34 142 -66 27 49 0 0 chr4 65285804 65285845 -137042502 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr4 65287172 65287194 -137041153 + AT_rich Low_complexity Low_complexity 1 22 0 446 310 38 6 chr4 65287887 65288045 -137040302 + L2 LINE L2 1799 1961 -1353 523 250 9 0 chr4 65288056 65288164 -137040183 + L2 LINE L2 2654 2762 -552 2571 42 0 0 chr4 65288180 65288486 -137039861 + AluY SINE Alu 1 306 -5 2326 288 110 24 chr4 65288501 65289718 -137038629 + L2 LINE L2 1992 3312 -1 312 354 157 28 chr4 65290155 65290519 -137037828 + L3b LINE CR1 1130 1540 -43 432 352 31 18 chr4 65290734 65290961 -137037386 - MIR SINE MIR -30 232 3 217 250 155 52 chr4 65291001 65291117 -137037230 + MIR SINE MIR 40 167 -95 322 324 28 0 chr4 65291422 65291530 -137036817 + MIR SINE MIR 130 240 -22 40 49 0 0 chr4 65291819 65291880 -137036467 + AT_rich Low_complexity Low_complexity 1 61 0 1891 145 3 0 chr4 65291880 65292163 -137036184 - AluSx SINE Alu -28 284 1 26 30 0 0 chr4 65292174 65292207 -137036140 + AT_rich Low_complexity Low_complexity 1 33 0 314 237 11 65 chr4 65293002 65293095 -137035252 + L2 LINE L2 3163 3250 -22 246 116 0 0 chr4 65293131 65293143 -137035204 + (GTATG)n Simple_repeat Simple_repeat 1 55 0 246 116 0 0 chr4 65293143 65293186 -137035161 + (GTATG)n Simple_repeat Simple_repeat 2 44 0 387 0 0 0 chr4 65294185 65294228 -137034119 + (CA)n Simple_repeat Simple_repeat 2 44 0 2989 177 4 7 chr4 65294228 65294776 -137033571 + MER44D DNA MER2_type 3 603 -2 2432 59 3 0 chr4 65297061 65297364 -137030983 + AluY SINE Alu 1 304 -7 296 291 146 0 chr4 65297581 65297684 -137030663 - L2 LINE L2 -5 3267 3150 251 284 95 60 chr4 65297994 65298110 -137030237 - MIR SINE MIR -126 136 17 1791 165 39 14 chr4 65298596 65298953 -137029394 - Tigger2a DNA MER2_type -65 369 4 269 333 49 0 chr4 65299683 65299785 -137028562 + MIR SINE MIR 62 168 -94 506 303 114 9 chr4 65299850 65300061 -137028286 - MIR SINE MIR -10 252 20 2037 101 35 11 chr4 65300204 65300491 -137027856 + AluSc SINE Alu 1 294 -15 25 0 0 0 chr4 65300491 65300516 -137027831 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 65300664 65300686 -137027661 + AT_rich Low_complexity Low_complexity 1 22 0 42142 34 24 1 chr4 65303384 65309393 -137018954 - L1PA3 LINE L1 -3 6152 5 314 237 11 65 chr4 65313147 65313240 -137015107 + L2 LINE L2 3163 3250 -22 246 116 0 0 chr4 65313276 65313288 -137015059 + (GTATG)n Simple_repeat Simple_repeat 1 55 0 246 116 0 0 chr4 65313288 65313331 -137015016 + (GTATG)n Simple_repeat Simple_repeat 2 44 0 1424 208 25 39 chr4 65313833 65314271 -137014076 - L1M4 LINE L1 -3004 3953 3522 500 268 32 17 chr4 65314254 65314491 -137013856 - L1M4 LINE L1 -6355 500 11 * 180 273 0 0 chr4 65316131 65316175 -137012172 + MIR SINE MIR 147 190 -72 201 74 0 0 chr4 65316295 65316322 -137012025 + (TATATG)n Simple_repeat Simple_repeat 3 29 0 222 91 0 0 chr4 65316341 65316374 -137011973 + (TG)n Simple_repeat Simple_repeat 2 34 0 395 230 101 54 chr4 65316374 65316522 -137011825 + L2 LINE L2 3158 3312 -1 26 30 0 0 chr4 65316695 65316728 -137011619 + AT_rich Low_complexity Low_complexity 1 33 0 272 266 0 43 chr4 65316942 65317036 -137011311 + MARNA DNA Mariner 140 229 -357 369 0 0 0 chr4 65317438 65317479 -137010868 + (TG)n Simple_repeat Simple_repeat 2 42 0 24 32 0 0 chr4 65318383 65318414 -137009933 + AT_rich Low_complexity Low_complexity 1 31 0 28 71 0 0 chr4 65318618 65318674 -137009673 + AT_rich Low_complexity Low_complexity 1 56 0 21 82 0 0 chr4 65319216 65319265 -137009082 + AT_rich Low_complexity Low_complexity 1 49 0 27 73 0 0 chr4 65319361 65319416 -137008931 + AT_rich Low_complexity Low_complexity 1 55 0 25 51 0 0 chr4 65320548 65320587 -137007760 + AT_rich Low_complexity Low_complexity 1 39 0 1551 194 75 6 chr4 65320887 65321233 -137007114 + L1MB7 LINE L1 5806 6175 -9 180 111 0 0 chr4 65321986 65322013 -137006334 + (TATATG)n Simple_repeat Simple_repeat 3 29 0 222 91 0 0 chr4 65322032 65322065 -137006282 + (TG)n Simple_repeat Simple_repeat 2 34 0 2046 267 65 18 chr4 65322219 65323013 -137005334 + Charlie7 DNA MER1_type 315 1146 -1466 268 252 81 27 chr4 65323025 65323136 -137005211 - L1ME1 LINE L1 -5 6161 6045 8677 54 5 1 chr4 65323137 65324204 -137004143 - MER11C LTR ERVK 0 1071 1 328 264 0 0 chr4 65324332 65324419 -137003928 + MIR SINE MIR 87 173 -89 394 178 0 0 chr4 65324470 65324543 -137003804 + Charlie7 DNA MER1_type 1168 1240 -1372 421 259 264 0 chr4 65324627 65324824 -137003523 + L2 LINE L2 2409 2657 -657 355 268 210 37 chr4 65324848 65325143 -137003204 + L2 LINE L2 2848 3193 -120 334 393 68 8 chr4 65325234 65325486 -137002861 - L2 LINE L2 -601 2713 2447 32 67 0 0 chr4 65326254 65326314 -137002033 + AT_rich Low_complexity Low_complexity 1 60 0 1583 242 83 42 chr4 65326881 65327231 -137001116 - L1ME1 LINE L1 -77 6089 5712 1973 167 40 26 chr4 65327231 65327651 -137000696 - MSTB LTR MaLR 0 426 1 1583 242 83 42 chr4 65327651 65327780 -137000567 - L1ME1 LINE L1 -454 5712 5590 2291 67 0 32 chr4 65328000 65328313 -137000034 - AluY SINE Alu -8 303 1 2306 85 3 3 chr4 65328550 65328856 -136999491 + AluSc SINE Alu 2 307 -2 352 376 0 13 chr4 65329189 65329346 -136999001 + MIR3 SINE MIR 54 208 0 24 85 0 0 chr4 65329508 65329567 -136998780 + AT_rich Low_complexity Low_complexity 1 59 0 21 57 0 0 chr4 65329943 65329978 -136998369 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr4 65332405 65332434 -136995913 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 65332488 65332516 -136995831 + AT_rich Low_complexity Low_complexity 1 28 0 195 217 22 22 chr4 65332994 65333040 -136995307 - L2 LINE L2 -8 3264 3219 225 0 0 0 chr4 65333092 65333117 -136995230 + (TTA)n Simple_repeat Simple_repeat 2 26 0 22 88 0 0 chr4 65333153 65333210 -136995137 + AT_rich Low_complexity Low_complexity 1 57 0 224 77 26 0 chr4 65334832 65334871 -136993476 + (TC)n Simple_repeat Simple_repeat 1 40 0 218 276 17 0 chr4 65335814 65335872 -136992475 + MIR3 SINE MIR 104 162 -46 1372 235 43 9 chr4 65338037 65338365 -136989982 - MER58B DNA MER1_type -1 340 2 26 30 0 0 chr4 65338452 65338485 -136989862 + AT_rich Low_complexity Low_complexity 1 33 0 231 88 0 0 chr4 65338953 65338987 -136989360 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 766 222 51 69 chr4 65339011 65339286 -136989061 - MLT1B LTR MaLR 0 390 121 2513 273 73 15 chr4 65339293 65340073 -136988274 + MER21B LTR ERV1 12 836 -27 499 248 26 8 chr4 65340089 65340206 -136988141 - MLT1B LTR MaLR -252 122 4 295 319 110 0 chr4 65340216 65340307 -136988040 - L2 LINE L2 -38 3234 3134 24 0 0 0 chr4 65340390 65340414 -136987933 + AT_rich Low_complexity Low_complexity 1 24 0 428 305 137 11 chr4 65342204 65342394 -136985953 - MIR SINE MIR -3 259 46 27 62 0 0 chr4 65342731 65342779 -136985568 + AT_rich Low_complexity Low_complexity 1 48 0 218 263 0 0 chr4 65343961 65344018 -136984329 + (TGAA)n Simple_repeat Simple_repeat 1 57 0 24 53 0 0 chr4 65344776 65344814 -136983533 + AT_rich Low_complexity Low_complexity 1 38 0 450 86 94 0 chr4 65345324 65345573 -136982774 + (TA)n Simple_repeat Simple_repeat 1 272 0 21 0 0 0 chr4 65346290 65346311 -136982036 + AT_rich Low_complexity Low_complexity 1 21 0 545 257 55 52 chr4 65346403 65346675 -136981672 - L1MC4 LINE L1 -32 8010 7738 254 250 0 0 chr4 65346679 65346731 -136981616 - MER45 DNA AcHobo 0 1581 1530 779 311 89 23 chr4 65346734 65347275 -136981072 - MER45C DNA AcHobo -332 621 1 1259 209 126 3 chr4 65347275 65347577 -136980770 - L1MC4 LINE L1 -301 7741 7403 1237 203 51 24 chr4 65348236 65348531 -136979816 - AluJo SINE Alu -9 303 1 2435 229 99 66 chr4 65348713 65349893 -136978454 - L1MDa LINE L1 -5016 1524 211 272 27 27 0 chr4 65349893 65349930 -136978417 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 2435 229 99 66 chr4 65349930 65350056 -136978291 - L1MDa LINE L1 -6329 211 91 283 278 28 0 chr4 65352670 65352742 -136975605 + MER5C DNA MER1_type 51 124 -200 3009 120 94 20 chr4 65352843 65353334 -136975013 - MER1A DNA MER1_type 0 527 1 1762 150 30 10 chr4 65353357 65353657 -136974690 + AluJb SINE Alu 3 308 -4 248 164 0 36 chr4 65353658 65353713 -136974634 + MER5C DNA MER1_type 272 324 0 363 330 73 55 chr4 65354178 65354508 -136973839 - MLT1J LTR MaLR -175 336 1 2781 158 79 19 chr4 65355261 65355832 -136972515 - MER6A DNA MER2_type 0 605 1 1957 125 3 30 chr4 65355940 65356245 -136972102 - AluSx SINE Alu -15 297 1 2531 46 0 0 chr4 65356545 65356848 -136971499 - AluY SINE Alu -7 304 2 317 235 100 94 chr4 65357081 65357172 -136971175 + MIR SINE MIR 46 140 -122 2354 54 0 72 chr4 65357172 65357505 -136970842 + AluY SINE Alu 1 309 -2 317 235 100 94 chr4 65357505 65357583 -136970764 + MIR SINE MIR 140 216 -46 32 57 0 0 chr4 65357781 65357834 -136970513 + AT_rich Low_complexity Low_complexity 1 53 0 22 56 0 0 chr4 65358171 65358207 -136970140 + AT_rich Low_complexity Low_complexity 1 36 0 208 262 24 0 chr4 65358936 65359020 -136969327 + (TA)n Simple_repeat Simple_repeat 2 87 0 187 308 81 47 chr4 65359430 65359602 -136968745 - L2 LINE L2 -265 3007 2830 976 271 113 24 chr4 65360157 65360485 -136967862 - LTR18A LTR ERVL 0 357 1 11411 156 19 6 chr4 65360486 65362293 -136966054 - HERVL18 LTR ERVL 0 6047 4218 2261 139 0 3 chr4 65362273 65362605 -136965742 - HERVL18 LTR ERVL -2459 3588 3258 * 8229 164 14 2 chr4 65362634 65364245 -136964102 - HERVL18 LTR ERVL -4346 1701 2 1061 268 118 6 chr4 65364252 65364573 -136963774 - LTR18A LTR ERVL 0 357 1 631 277 112 0 chr4 65364704 65364910 -136963437 + MIR SINE MIR 5 233 -29 882 39 8 16 chr4 65364960 65365089 -136963258 + (TCTA)n Simple_repeat Simple_repeat 3 130 0 362 286 56 8 chr4 65367982 65368108 -136960239 + MIR SINE MIR 72 203 -59 2087 109 3 0 chr4 65368704 65369096 -136959251 - AluSp SINE Alu 0 393 1 195 351 0 32 chr4 65369286 65369380 -136958967 + L2 LINE L2 3174 3264 -8 1086 333 96 19 chr4 65369546 65370191 -136958156 + L2 LINE L2 1900 2594 -720 327 359 15 0 chr4 65370206 65370337 -136958010 + L2 LINE L2 3181 3313 0 352 368 57 10 chr4 65371743 65371952 -136956395 + L2 LINE L2 2530 2748 -566 32 26 0 0 chr4 65372088 65372127 -136956220 + AT_rich Low_complexity Low_complexity 1 39 0 188 273 0 0 chr4 65372577 65372610 -136955737 - L2 LINE L2 -97 3175 3143 196 254 55 0 chr4 65372785 65372840 -136955507 - L2 LINE L2 -307 2965 2908 227 222 56 0 chr4 65373040 65373094 -136955253 - L2 LINE L2 -1047 2267 2211 189 0 0 0 chr4 65374598 65374619 -136953728 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 618 47 12 0 chr4 65374627 65374712 -136953635 - L1PA3 LINE L1 0 6155 6070 229 270 81 0 chr4 65374853 65374927 -136953420 + L2 LINE L2 3234 3313 0 2272 48 0 0 chr4 65374967 65375238 -136953109 - AluY SINE Alu -7 304 34 2151 81 10 13 chr4 65375723 65376033 -136952314 - L1PA7 LINE L1 -5 6149 5841 2060 124 0 3 chr4 65376294 65376612 -136951735 - AluSg SINE Alu 0 317 1 245 333 0 0 chr4 65377190 65377256 -136951091 - MIR SINE MIR -150 112 47 1230 122 0 0 chr4 65377784 65377956 -136950391 - AluSg/x SINE Alu -12 300 129 187 298 173 24 chr4 65378675 65378843 -136949504 - L2 LINE L2 -559 2755 2563 1943 152 3 0 chr4 65381035 65381331 -136947016 + AluJb SINE Alu 1 297 -15 283 381 54 6 chr4 65381381 65381549 -136946798 - MIR SINE MIR -41 221 46 180 338 0 70 chr4 65381907 65381978 -136946369 + L2 LINE L2 2995 3060 -253 1165 149 68 159 chr4 65382018 65382401 -136945946 + MER7A DNA MER2_type 1 346 0 183 244 183 37 chr4 65384341 65384423 -136943924 + L2 LINE L2 3210 3303 -10 565 279 106 29 chr4 65384635 65384843 -136943504 + MIR SINE MIR 8 231 -31 737 145 6 19 chr4 65384949 65385108 -136943239 + GA-rich Low_complexity Low_complexity 2 158 0 30 0 0 0 chr4 65385315 65385345 -136943002 + AT_rich Low_complexity Low_complexity 1 30 0 2125 103 0 3 chr4 65385345 65385635 -136942712 - AluSc SINE Alu -20 289 1 355 319 12 0 chr4 65386642 65386808 -136941539 - L1MEc LINE L1 -4052 2344 2177 301 292 86 35 chr4 65386886 65387143 -136941204 + L1M4 LINE L1 4315 4584 -1562 329 258 153 85 chr4 65388215 65388641 -136939706 + LTR16A LTR ERVL 1 448 -2 29 0 0 0 chr4 65389709 65389738 -136938609 + AT_rich Low_complexity Low_complexity 1 29 0 398 252 47 31 chr4 65389769 65389896 -136938451 - L3 LINE CR1 -1135 442 314 27 29 0 0 chr4 65390126 65390160 -136938187 + AT_rich Low_complexity Low_complexity 1 34 0 198 225 155 14 chr4 65390265 65390336 -136938011 + MIR SINE MIR 153 233 -29 206 214 18 18 chr4 65390856 65390912 -136937435 + (TA)n Simple_repeat Simple_repeat 1 56 0 239 290 75 9 chr4 65391692 65391799 -136936548 - L2 LINE L2 -54 3259 3146 32 57 0 0 chr4 65391877 65391930 -136936417 + AT_rich Low_complexity Low_complexity 1 53 0 1694 172 41 0 chr4 65392013 65392304 -136936043 - AluSx SINE Alu -9 303 1 360 287 0 0 chr4 65392546 65392640 -136935707 - L1MC4 LINE L1 -1334 6708 6615 313 311 0 0 chr4 65392573 65392663 -136935684 + L1MC4 LINE L1 6614 6703 -1339 * 183 114 0 0 chr4 65392665 65392700 -136935647 + (TA)n Simple_repeat Simple_repeat 2 36 0 213 302 111 32 chr4 65393834 65393960 -136934387 + MIR SINE MIR 18 153 -55 474 18 0 0 chr4 65394025 65394080 -136934267 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 32 95 0 0 chr4 65394396 65394491 -136933856 + AT_rich Low_complexity Low_complexity 1 95 0 30 27 0 0 chr4 65394535 65394572 -136933775 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 65394582 65394603 -136933744 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 65394895 65394920 -136933427 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr4 65394988 65395016 -136933331 + AT_rich Low_complexity Low_complexity 1 28 0 365 242 8 48 chr4 65395432 65395556 -136932791 - L2 LINE L2 -81 3232 3114 2559 146 56 54 chr4 65395600 65396513 -136931834 - L1MA4 LINE L1 -511 5789 4885 2798 141 30 16 chr4 65396516 65396750 -136931597 + L1MA4 LINE L1 5786 6015 -285 2206 101 21 58 chr4 65396750 65396962 -136931385 - THE1B LTR MaLR 0 364 146 2113 100 0 4 chr4 65396962 65397243 -136931104 + AluSx SINE Alu 1 280 -32 207 0 0 0 chr4 65397246 65397269 -136931078 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2206 101 21 58 chr4 65397269 65397430 -136930917 - THE1B LTR MaLR -220 144 1 2798 141 30 16 chr4 65397430 65397699 -136930648 + L1MA4 LINE L1 6015 6296 -4 304 172 17 121 chr4 65399317 65399392 -136928955 - MER53 DNA DNA -85 104 44 1888 147 134 11 chr4 65399392 65399773 -136928574 - MSTA LTR MaLR 0 428 1 304 172 17 121 chr4 65399773 65399813 -136928534 - MER53 DNA DNA -145 44 1 496 227 107 14 chr4 65400167 65400325 -136928022 - MER58A DNA MER1_type 0 156 1 228 35 0 0 chr4 65401925 65401954 -136926393 + (TA)n Simple_repeat Simple_repeat 2 30 0 1633 157 11 7 chr4 65402015 65402336 -136926011 + AluSx SINE Alu 1 322 0 511 217 43 0 chr4 65402772 65402887 -136925460 + L2 LINE L2 3193 3312 -1 204 158 0 0 chr4 65403665 65403703 -136924644 + GA-rich Low_complexity Low_complexity 1 38 0 642 323 8 32 chr4 65405322 65405573 -136922774 + MIR SINE MIR 2 246 -16 27 73 0 0 chr4 65406065 65406120 -136922227 + AT_rich Low_complexity Low_complexity 1 55 0 1208 270 79 20 chr4 65406986 65407582 -136920765 - Charlie2 DNA MER1_type 0 2862 2232 240 190 38 38 chr4 65408082 65408161 -136920186 + (CAATA)n Simple_repeat Simple_repeat 2 80 0 981 264 261 15 chr4 65408421 65408819 -136919528 - MLT1F1 LTR MaLR -7 560 65 305 397 15 23 chr4 65408927 65409073 -136919274 + MIR3 SINE MIR 26 172 -36 257 306 27 61 chr4 65409157 65409304 -136919043 - L2 LINE L2 -1340 1974 1833 342 45 0 0 chr4 65409374 65409418 -136918929 + (TG)n Simple_repeat Simple_repeat 1 44 0 434 345 43 20 chr4 65409608 65409863 -136918484 + MIR SINE MIR 2 262 0 279 389 50 7 chr4 65409990 65410129 -136918218 - L2 LINE L2 -12 3260 3116 1518 131 15 113 chr4 65412399 65412598 -136915749 - AluSx SINE Alu 0 302 148 2242 105 3 13 chr4 65412598 65412912 -136915435 + AluSp SINE Alu 1 311 -2 1518 131 15 113 chr4 65412912 65413047 -136915300 - AluSx SINE Alu -154 148 1 210 164 0 0 chr4 65413095 65413150 -136915197 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 231 114 0 0 chr4 65413541 65413576 -136914771 + (CA)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr4 65414176 65414199 -136914148 + AT_rich Low_complexity Low_complexity 1 23 0 2351 177 20 38 chr4 65416039 65416594 -136911753 - L1MA9 LINE L1 -2 6310 5766 760 131 58 89 chr4 65416600 65416681 -136911666 + L1M3 LINE L1 5254 5336 -832 1954 109 11 0 chr4 65416681 65416996 -136911351 + AluSx SINE Alu 6 323 0 760 131 58 89 chr4 65416996 65417104 -136911243 + L1M3 LINE L1 5336 5438 -730 2181 104 10 0 chr4 65419628 65419927 -136908420 + AluSp SINE Alu 1 302 -11 29 28 0 0 chr4 65420019 65420055 -136908292 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr4 65420148 65420174 -136908173 + AT_rich Low_complexity Low_complexity 1 26 0 232 47 23 23 chr4 65422088 65422131 -136906216 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2272 68 0 4 chr4 65422136 65422416 -136905931 - AluY SINE Alu -32 279 1 876 247 21 99 chr4 65423352 65423635 -136904712 + MIR SINE MIR 2 262 0 28 29 0 0 chr4 65423840 65423875 -136904472 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 65424505 65424526 -136903821 + AT_rich Low_complexity Low_complexity 1 21 0 416 319 99 11 chr4 65425241 65425423 -136902924 - MIR SINE MIR -12 250 53 209 373 80 13 chr4 65426191 65426416 -136901931 + L2 LINE L2 2843 3082 -190 237 298 24 0 chr4 65426487 65426571 -136901776 + CT-rich Low_complexity Low_complexity 3 88 0 679 215 0 0 chr4 65427754 65427889 -136900458 - FLAM_C SINE Alu -5 138 4 246 32 0 0 chr4 65428189 65428220 -136900127 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 233 339 57 16 chr4 65430078 65430202 -136898145 + MIR SINE MIR 116 244 -18 210 231 0 0 chr4 65430445 65430484 -136897863 + (TG)n Simple_repeat Simple_repeat 2 40 0 455 279 14 96 chr4 65431173 65431392 -136896955 - MIR SINE MIR -57 205 5 547 132 44 15 chr4 65431592 65431728 -136896619 + GA-rich Low_complexity Low_complexity 3 142 0 310 318 32 16 chr4 65431935 65432061 -136896286 + L2 LINE L2 3184 3311 -2 2008 75 79 0 chr4 65432554 65432832 -136895515 + AluSp SINE Alu 1 300 -13 2362 57 3 0 chr4 65432832 65433128 -136895219 + AluY SINE Alu 1 297 -14 2292 79 0 28 chr4 65433677 65433995 -136894352 - AluY SINE Alu -2 309 1 2168 108 3 3 chr4 65434440 65434737 -136893610 + AluY SINE Alu 1 297 -14 23 54 0 0 chr4 65434906 65434943 -136893404 + AT_rich Low_complexity Low_complexity 1 37 0 275 311 19 0 chr4 65435675 65435778 -136892569 + MIR SINE MIR 147 251 -11 396 40 0 0 chr4 65436146 65436196 -136892151 + (CA)n Simple_repeat Simple_repeat 1 50 0 315 0 0 0 chr4 65436201 65436236 -136892111 + (GA)n Simple_repeat Simple_repeat 2 36 0 513 259 30 76 chr4 65436908 65437105 -136891242 - MIR SINE MIR -55 207 20 247 288 0 15 chr4 65437232 65437313 -136891034 + MIR SINE MIR 15 94 -114 242 280 47 47 chr4 65437329 65437436 -136890911 - L2 LINE L2 -10 3303 3197 33 73 0 0 chr4 65439846 65439914 -136888433 + AT_rich Low_complexity Low_complexity 1 68 0 742 189 0 19 chr4 65439914 65440073 -136888274 - L1MA4 LINE L1 -5 6295 6140 1644 196 0 7 chr4 65440175 65440466 -136887881 - AluJo SINE Alu -23 289 1 27 0 0 0 chr4 65440513 65440540 -136887807 + AT_rich Low_complexity Low_complexity 1 27 0 4420 166 93 11 chr4 65440553 65441564 -136886783 - L1MA5 LINE L1 -23 6277 5181 335 295 145 24 chr4 65442249 65442415 -136885932 + MIR SINE MIR 46 231 -31 510 89 13 25 chr4 65443728 65443807 -136884540 + THE1B LTR MaLR 1 78 -286 4990 183 22 27 chr4 65444762 65444939 -136883408 - L1PA16 LINE L1 -9 6157 5981 2188 130 14 8 chr4 65444939 65445292 -136883055 - THE1A LTR MaLR 0 355 1 2400 86 0 0 chr4 65445296 65445598 -136882749 - AluSq SINE Alu -10 303 2 4990 183 22 27 chr4 65445598 65447257 -136881090 - L1PA16 LINE L1 -188 5978 4326 1591 142 7 50 chr4 65447257 65447559 -136880788 + AluSx SINE Alu 11 299 -13 4990 183 22 27 chr4 65447559 65447716 -136880631 - L1PA16 LINE L1 -1840 4326 4170 254 256 41 50 chr4 65448403 65448524 -136879823 - MIR SINE MIR -43 219 100 28 29 0 0 chr4 65448706 65448741 -136879606 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 65449430 65449453 -136878894 + AT_rich Low_complexity Low_complexity 1 23 0 219 331 81 40 chr4 65450211 65450359 -136877988 + L3 LINE CR1 1210 1363 -214 22 35 0 0 chr4 65450615 65450644 -136877703 + AT_rich Low_complexity Low_complexity 1 29 0 543 335 111 31 chr4 65451263 65451772 -136876575 + L2 LINE L2 2772 3312 -1 31 0 0 0 chr4 65453150 65453181 -136875166 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 65454337 65454365 -136873982 + AT_rich Low_complexity Low_complexity 1 28 0 309 82 0 0 chr4 65456820 65456869 -136871478 + (TG)n Simple_repeat Simple_repeat 2 50 0 279 340 7 64 chr4 65457335 65457476 -136870871 - L2 LINE L2 -212 3060 2928 236 306 37 30 chr4 65457811 65457945 -136870402 - L2 LINE L2 -797 2517 2383 243 125 0 0 chr4 65459221 65459261 -136869086 + (TG)n Simple_repeat Simple_repeat 1 40 0 320 337 171 0 chr4 65460699 65460904 -136867443 + MIR SINE MIR 3 242 -20 188 352 39 82 chr4 65461372 65461605 -136866742 - L2 LINE L2 -225 3047 2825 183 335 154 41 chr4 65461727 65462046 -136866301 - L2 LINE L2 -633 2681 2327 1401 218 52 0 chr4 65462663 65462960 -136865387 + AluJo SINE Alu 1 311 0 21 57 0 0 chr4 65463831 65463866 -136864481 + AT_rich Low_complexity Low_complexity 1 35 0 640 264 130 13 chr4 65464196 65464427 -136863920 + MIR SINE MIR 2 259 -3 247 361 128 8 chr4 65464540 65464673 -136863674 + L2 LINE L2 3124 3272 0 557 252 15 0 chr4 65465553 65465684 -136862663 - MER94 DNA DNA 0 134 2 233 312 115 25 chr4 65467041 65467198 -136861149 + L2 LINE L2 3128 3298 -15 225 0 0 0 chr4 65468699 65468724 -136859623 + (CG)n Simple_repeat Simple_repeat 2 26 0 180 0 0 0 chr4 65468723 65468743 -136859604 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 424 115 26 0 chr4 65470055 65470133 -136858214 - L1PA16 LINE L1 0 6166 6087 11509 229 42 39 chr4 65470135 65474299 -136854048 - L1PBb LINE L1 -1012 5836 1686 224 0 65 0 chr4 65474299 65474330 -136854017 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 11509 229 42 39 chr4 65474330 65474606 -136853741 - L1PBb LINE L1 -5162 1686 1412 2258 96 0 7 chr4 65474606 65474909 -136853438 - AluSp SINE Alu -12 301 1 11509 229 42 39 chr4 65474909 65475187 -136853160 - L1PBb LINE L1 -5436 1412 1003 341 362 68 56 chr4 65475703 65476203 -136852144 - L1PBb LINE L1 -6333 516 11 448 266 234 5 chr4 65476214 65476398 -136851949 - MIR SINE MIR -34 228 3 2068 140 3 0 chr4 65476435 65476743 -136851604 + AluSx SINE Alu 2 310 -2 216 0 0 0 chr4 65477514 65477538 -136850809 + (T)n Simple_repeat Simple_repeat 1 24 0 306 0 0 0 chr4 65478011 65478045 -136850302 + (CA)n Simple_repeat Simple_repeat 2 35 0 282 246 291 9 chr4 65478312 65478422 -136849925 - MIR3 SINE MIR -11 197 57 380 299 45 53 chr4 65478948 65479212 -136849135 + L2 LINE L2 1801 2062 -1252 1612 206 118 25 chr4 65479328 65479770 -136848577 + MLT1D LTR MaLR 23 505 0 483 301 102 37 chr4 65480126 65480612 -136847735 - L1M2 LINE L1 -424 5754 5279 285 326 35 0 chr4 65481293 65481379 -136846968 - MER115 DNA AcHobo -7 686 598 1985 105 0 4 chr4 65481706 65481983 -136846364 - AluSx SINE Alu -36 276 1 278 26 26 0 chr4 65482045 65482084 -136846263 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 603 361 25 11 chr4 65482183 65482457 -136845890 + L2 LINE L2 2567 2844 -470 3970 223 32 4 chr4 65482484 65483384 -136844963 - MER63C DNA MER1_type -5 925 1 5752 184 21 44 chr4 65483421 65485594 -136842753 - L1PA15 LINE L1 0 6165 4041 253 326 34 0 chr4 65485869 65485958 -136842389 + L2 LINE L2 3222 3313 0 21 0 0 0 chr4 65486079 65486100 -136842247 + AT_rich Low_complexity Low_complexity 1 21 0 229 192 58 19 chr4 65488352 65488404 -136839943 - L2 LINE L2 -4 3309 3256 22 0 0 0 chr4 65488609 65488631 -136839716 + AT_rich Low_complexity Low_complexity 1 22 0 1604 197 3 20 chr4 65488633 65488928 -136839419 - AluJb SINE Alu -18 294 5 22 35 0 0 chr4 65490263 65490292 -136838055 + AT_rich Low_complexity Low_complexity 1 29 0 306 0 0 0 chr4 65490333 65490367 -136837980 + (TTTTA)n Simple_repeat Simple_repeat 4 37 0 2172 103 0 7 chr4 65490369 65490659 -136837688 - AluSx SINE Alu -24 288 1 22 35 0 0 chr4 65490663 65490692 -136837655 + AT_rich Low_complexity Low_complexity 1 29 0 886 281 65 58 chr4 65490886 65491424 -136836923 - MER34 LTR ERV1 0 542 1 730 267 145 44 chr4 65491625 65491754 -136836593 - L2 LINE L2 -9 3304 3189 3863 79 45 0 chr4 65491754 65492284 -136836063 - MER41A LTR ERV1 0 554 1 730 267 145 44 chr4 65492284 65492757 -136835590 - L2 LINE L2 -124 3189 2650 185 56 0 56 chr4 65493965 65494001 -136834346 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 385 138 0 23 chr4 65494272 65494359 -136833988 + (TA)n Simple_repeat Simple_repeat 2 86 0 396 186 26 0 chr4 65494739 65494852 -136833495 + (TCTA)n Simple_repeat Simple_repeat 2 117 0 237 273 125 11 chr4 65495065 65495153 -136833194 + MIR SINE MIR 91 188 -74 22 0 0 0 chr4 65496806 65496828 -136831519 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr4 65497960 65497981 -136830366 + (TTA)n Simple_repeat Simple_repeat 2 22 0 574 250 0 0 chr4 65497986 65498102 -136830245 - FLAM_A SINE Alu -17 116 1 4936 153 32 9 chr4 65498167 65499015 -136829332 - Tigger1 DNA MER2_type 0 2418 1552 743 131 0 0 chr4 65499021 65499128 -136829219 + FRAM SINE Alu 60 166 -10 8892 122 18 67 chr4 65499151 65499891 -136828456 - Tigger1 DNA MER2_type -862 1556 781 2043 93 7 4 chr4 65499891 65500192 -136828155 + AluSc SINE Alu 1 302 0 8892 122 18 67 chr4 65500192 65500443 -136827904 - Tigger1 DNA MER2_type -1637 781 519 1513 215 10 3 chr4 65500443 65500736 -136827611 - AluJo SINE Alu -17 295 1 8892 122 18 67 chr4 65500736 65501376 -136826971 - Tigger1 DNA MER2_type -1899 519 3 2277 110 0 0 chr4 65501700 65501999 -136826348 - AluSq SINE Alu -12 301 3 1573 216 13 25 chr4 65502238 65502631 -136825716 - MLT1B LTR MaLR -2 388 1 22 0 0 0 chr4 65502814 65502836 -136825511 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr4 65502886 65502928 -136825419 + AT_rich Low_complexity Low_complexity 1 42 0 403 297 76 8 chr4 65503269 65503387 -136824960 - MIR3 SINE MIR -17 191 66 1873 174 25 19 chr4 65503471 65503834 -136824513 + MLT1A1 LTR MaLR 1 365 0 197 350 52 21 chr4 65504697 65504794 -136823553 - MIR SINE MIR -140 122 23 285 257 137 34 chr4 65505060 65505235 -136823112 - MER112 DNA MER1_type 0 260 68 23 0 0 0 chr4 65505390 65505413 -136822934 + AT_rich Low_complexity Low_complexity 1 23 0 1814 176 9 137 chr4 65505423 65505616 -136822731 - L1MB8 LINE L1 -12 6166 5950 622 217 9 0 chr4 65505616 65505731 -136822616 + FLAM_A SINE Alu 1 116 -17 1814 176 9 137 chr4 65505731 65505951 -136822396 - L1MB8 LINE L1 -228 5950 5847 477 219 8 8 chr4 65505951 65506074 -136822273 - L1MB5 LINE L1 -9 6165 6043 1814 176 9 137 chr4 65506074 65506243 -136822104 - L1MB8 LINE L1 -331 5847 5658 372 283 96 30 chr4 65506735 65506933 -136821414 + L2 LINE L2 3094 3304 -9 1661 170 49 3 chr4 65507356 65507480 -136820867 + AluJo SINE Alu 1 118 -194 432 0 0 0 chr4 65507480 65507528 -136820819 + (TAAAA)n Simple_repeat Simple_repeat 4 51 0 1661 170 49 3 chr4 65507528 65507691 -136820656 + AluJo SINE Alu 118 301 -11 226 209 275 11 chr4 65507889 65507980 -136820367 - MIR SINE MIR -10 252 138 198 256 23 0 chr4 65508099 65508142 -136820205 + L2 LINE L2 3267 3310 -3 21 0 0 0 chr4 65508740 65508761 -136819586 + AT_rich Low_complexity Low_complexity 1 21 0 187 324 73 0 chr4 65509248 65509316 -136819031 - L2 LINE L2 -3 3310 3238 189 0 0 0 chr4 65513250 65513271 -136815076 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 321 131 0 0 chr4 65513314 65513375 -136814972 + (TG)n Simple_repeat Simple_repeat 2 62 0 1749 167 3 16 chr4 65513692 65513997 -136814350 + AluJo SINE Alu 1 301 -11 1492 223 120 17 chr4 65516681 65517164 -136811183 - MLT1F1 LTR MaLR -20 606 2 3589 117 32 10 chr4 65517167 65517756 -136810591 - LTR43 LTR ERV1 0 602 1 253 280 189 15 chr4 65517758 65517890 -136810457 + L2 LINE L2 2144 2298 -1016 230 365 107 25 chr4 65517919 65518116 -136810231 + L2 LINE L2 2430 2642 -672 2819 105 12 10 chr4 65518339 65518757 -136809590 - L1PA10 LINE L1 0 6168 5750 284 333 76 0 chr4 65519109 65519214 -136809133 + L2 LINE L2 2247 2359 -955 201 129 0 0 chr4 65521053 65521084 -136807263 - L3b LINE CR1 -9 1574 1544 229 295 87 20 chr4 65522120 65522269 -136806078 + L1MC4a LINE L1 5330 5488 -2320 409 280 85 119 chr4 65522326 65522822 -136805525 + L1MC4a LINE L1 5572 6050 -1758 23 54 0 0 chr4 65524613 65524650 -136803697 + AT_rich Low_complexity Low_complexity 1 37 0 960 235 47 11 chr4 65527100 65527377 -136800970 - L1ME3A LINE L1 -6 6164 5878 437 279 50 22 chr4 65527390 65527612 -136800735 - L1MB8 LINE L1 -1 6177 5950 1496 182 29 19 chr4 65527959 65528267 -136800080 + AluJb SINE Alu 1 311 -1 17642 157 65 24 chr4 65529119 65532415 -136795932 - L1M1 LINE L1 -4117 3448 17 1191 213 0 20 chr4 65532784 65533028 -136795319 + AluJo SINE Alu 50 288 -24 2964 128 18 35 chr4 65535072 65535462 -136792885 - MER39B LTR ERV1 -2 651 271 1868 139 24 0 chr4 65535462 65535749 -136792598 - AluSx SINE Alu -18 294 1 2964 128 18 35 chr4 65535749 65535868 -136792479 - MER39B LTR ERV1 -382 271 151 1281 178 4 20 chr4 65535989 65536236 -136792111 + AluSq SINE Alu 71 313 0 222 308 0 0 chr4 65536991 65537056 -136791291 + CT-rich Low_complexity Low_complexity 2 66 0 555 225 80 0 chr4 65537786 65537937 -136790410 - MER103 DNA DNA -2 164 2 209 33 33 0 chr4 65538248 65538278 -136790069 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 1096 68 0 0 chr4 65538278 65538410 -136789937 - AluY SINE Alu -179 132 1 259 272 87 39 chr4 65539494 65539597 -136788750 - MIR SINE MIR -60 202 95 209 281 86 72 chr4 65539767 65539906 -136788441 - MIR SINE MIR -60 202 62 201 288 86 72 chr4 65540044 65540183 -136788164 - MIR SINE MIR -60 202 62 209 281 86 72 chr4 65540321 65540460 -136787887 - MIR SINE MIR -60 202 62 2106 125 0 3 chr4 65540965 65541270 -136787077 + AluSc SINE Alu 1 304 -5 24 53 0 0 chr4 65542953 65542991 -136785356 + AT_rich Low_complexity Low_complexity 1 38 0 398 318 87 47 chr4 65543160 65543296 -136785051 - MLT1K LTR MaLR -275 313 184 889 218 47 9 chr4 65543296 65543507 -136784840 + MER20 DNA MER1_type 1 219 0 398 318 87 47 chr4 65543507 65543669 -136784678 - MLT1K LTR MaLR -404 184 3 231 61 0 0 chr4 65544658 65544691 -136783656 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 23 33 0 0 chr4 65545289 65545319 -136783028 + AT_rich Low_complexity Low_complexity 1 30 0 2200 126 3 0 chr4 65545746 65546056 -136782291 + AluSx SINE Alu 1 311 -1 255 355 82 59 chr4 65546835 65547055 -136781292 - L2 LINE L2 -41 3231 3007 1484 184 85 48 chr4 65547276 65547652 -136780695 - MLT1B LTR MaLR 0 390 1 2004 194 62 138 chr4 65547875 65548253 -136780094 - LTR8A LTR ERV1 0 727 322 2026 97 0 11 chr4 65548253 65548522 -136779825 + AluSg SINE Alu 1 266 -44 216 0 0 0 chr4 65548530 65548554 -136779793 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2004 194 62 138 chr4 65548554 65548953 -136779394 - LTR8A LTR ERV1 -412 315 1 22 0 0 0 chr4 65550852 65550874 -136777473 + AT_rich Low_complexity Low_complexity 1 22 0 304 221 23 23 chr4 65551477 65551563 -136776784 - MLT1J1 LTR MaLR -7 439 354 287 243 111 55 chr4 65551610 65551791 -136776556 - MLT1J2 LTR MaLR -168 282 92 1526 209 14 0 chr4 65552093 65552376 -136775971 + AluJo SINE Alu 1 287 -25 1925 144 0 0 chr4 65553914 65554191 -136774156 + AluSx SINE Alu 1 277 -35 23 54 0 0 chr4 65554480 65554517 -136773830 + AT_rich Low_complexity Low_complexity 1 37 0 728 252 31 63 chr4 65555110 65555396 -136772951 + L2 LINE L2 3001 3277 -36 22 0 0 0 chr4 65555682 65555704 -136772643 + AT_rich Low_complexity Low_complexity 1 22 0 294 73 0 0 chr4 65556029 65556070 -136772277 + (TG)n Simple_repeat Simple_repeat 2 42 0 184 59 59 0 chr4 65556222 65556256 -136772091 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 736 176 0 22 chr4 65557271 65557407 -136770940 - FLAM_C SINE Alu 0 133 1 21 0 0 0 chr4 65557473 65557494 -136770853 + AT_rich Low_complexity Low_complexity 1 21 0 397 251 118 124 chr4 65558824 65559169 -136769178 - MLT1H LTR MaLR 0 549 207 1537 204 7 10 chr4 65559169 65559468 -136768879 - AluJb SINE Alu -12 300 3 397 251 118 124 chr4 65559468 65559672 -136768675 - MLT1H LTR MaLR -342 207 3 288 0 0 0 chr4 65559969 65560001 -136768346 + (CA)n Simple_repeat Simple_repeat 2 33 0 618 302 20 37 chr4 65560597 65560842 -136767505 + HAL1 LINE L1 2 242 -2265 2441 72 0 0 chr4 65561087 65561391 -136766956 - AluSc SINE Alu -5 304 1 23 33 0 0 chr4 65561946 65561976 -136766371 + AT_rich Low_complexity Low_complexity 1 30 0 682 332 36 8 chr4 65563050 65563303 -136765044 - MIR SINE MIR 0 262 3 230 348 11 0 chr4 65564088 65564177 -136764170 - L2 LINE L2 -1 3271 3182 186 152 0 0 chr4 65564921 65564954 -136763393 - L2 LINE L2 -4 3309 3277 922 178 30 30 chr4 65564956 65565158 -136763189 + MER105 DNA DNA 2 203 -1 390 250 11 0 chr4 65565607 65565695 -136762652 - L2 LINE L2 -6 3307 3219 213 309 0 0 chr4 65565875 65565943 -136762404 + (TA)n Simple_repeat Simple_repeat 2 69 0 191 315 40 60 chr4 65567190 65567339 -136761008 + MIR SINE MIR 100 245 -17 244 152 0 0 chr4 65567401 65567447 -136760900 + MADE1 DNA Mariner 1 46 -34 2051 97 0 24 chr4 65567777 65568065 -136760282 + AluSx SINE Alu 1 281 -31 224 54 54 0 chr4 65568068 65568105 -136760242 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 557 305 20 35 chr4 65568572 65568772 -136759575 - MIR SINE MIR -64 198 2 1524 101 5 0 chr4 65569882 65570089 -136758258 + AluSg SINE Alu 1 208 -102 1829 137 3 23 chr4 65570220 65570520 -136757827 - AluJo SINE Alu -18 294 1 351 309 54 7 chr4 65570823 65570972 -136757375 - L2 LINE L2 -255 3017 2862 2613 148 29 20 chr4 65571805 65572297 -136756050 - L1MA6 LINE L1 -1 6299 5804 1136 215 74 11 chr4 65572489 65572759 -136755588 + MLT1D LTR MaLR 1 287 -218 21 82 0 0 chr4 65572777 65572826 -136755521 + AT_rich Low_complexity Low_complexity 1 49 0 563 329 75 9 chr4 65573639 65573867 -136754480 + MIR SINE MIR 3 245 -17 457 169 0 11 chr4 65574258 65574347 -136754000 - AluJ/FRAM SINE Alu -9 303 216 183 349 48 48 chr4 65574714 65574797 -136753550 - MIR3 SINE MIR -48 160 78 1595 169 37 0 chr4 65575463 65575736 -136752611 + AluJo SINE Alu 1 283 -29 21 36 0 0 chr4 65575736 65575764 -136752583 + AT_rich Low_complexity Low_complexity 1 28 0 299 301 29 10 chr4 65576842 65576945 -136751402 + MIR SINE MIR 158 262 0 319 299 125 21 chr4 65577438 65577582 -136750765 - MIR SINE MIR -14 248 90 1675 179 21 3 chr4 65577745 65578036 -136750311 - AluSx SINE Alu -14 298 3 22 0 0 0 chr4 65578401 65578423 -136749924 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr4 65579480 65579505 -136748842 + (T)n Simple_repeat Simple_repeat 1 25 0 295 315 27 9 chr4 65579505 65579616 -136748731 - AluSq/x SINE Alu -169 133 21 761 305 38 0 chr4 65579641 65579933 -136748414 - Tigger1 DNA MER2_type -1 2417 2115 760 146 0 0 chr4 65580135 65580258 -136748089 - FLAM_C SINE Alu 0 143 21 11026 142 28 17 chr4 65580283 65582147 -136746200 - Tigger1 DNA MER2_type -1 2417 533 309 264 42 62 chr4 65582531 65582675 -136745672 + L1ME1 LINE L1 332 472 -5951 795 284 38 33 chr4 65583234 65583288 -136745059 + L1ME1 LINE L1 1128 1180 -5243 1720 139 28 129 chr4 65583288 65583721 -136744626 - MLT1B LTR MaLR 0 390 2 795 284 38 33 chr4 65583721 65584032 -136744315 + L1ME1 LINE L1 1180 1495 -4928 582 228 25 174 chr4 65584035 65584715 -136743632 + L1ME1 LINE L1 2239 2817 -4305 1549 170 64 40 chr4 65584719 65585086 -136743261 + MLT1C LTR MaLR 1 388 -2 1930 127 11 0 chr4 65585111 65585387 -136742960 + AluSx SINE Alu 1 279 -33 304 239 80 69 chr4 65585406 65585594 -136742753 + L1ME1 LINE L1 2831 3020 -4102 1493 241 6 0 chr4 65585606 65585942 -136742405 + L1ME1 LINE L1 6376 6713 -246 356 258 129 31 chr4 65585948 65586142 -136742205 + L1ME1 LINE L1 6748 6960 -1 302 264 63 69 chr4 65588138 65588297 -136740050 + L2 LINE L2 3144 3301 -12 340 227 27 93 chr4 65588731 65588881 -136739466 + MIR SINE MIR 97 236 -26 186 0 40 0 chr4 65588909 65588934 -136739413 + (TTTA)n Simple_repeat Simple_repeat 3 180 0 28248 29 3 0 chr4 65588934 65593120 -136735227 - L1PA3 LINE L1 -7 6148 1946 599 154 29 0 chr4 65593892 65593996 -136734351 + FLAM_C SINE Alu 1 107 -36 2554 175 28 4 chr4 65593996 65594465 -136733882 + LTR27 LTR ERV1 8 487 -149 1286 174 4 29 chr4 65594465 65594707 -136733640 + AluJb SINE Alu 63 298 -14 277 316 97 18 chr4 65594872 65594986 -136733361 + L2 LINE L2 3145 3267 -5 781 137 0 50 chr4 65595117 65595256 -136733091 + FLAM_C SINE Alu 2 133 0 23 33 0 0 chr4 65595527 65595557 -136732790 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr4 65595701 65595731 -136732616 + AT_rich Low_complexity Low_complexity 1 30 0 194 299 30 30 chr4 65595847 65595914 -136732433 - L2 LINE L2 -1 3312 3246 21 36 0 0 chr4 65596079 65596107 -136732240 + AT_rich Low_complexity Low_complexity 1 28 0 396 0 0 0 chr4 65597372 65597416 -136730931 + (CA)n Simple_repeat Simple_repeat 2 45 0 325 275 120 64 chr4 65598015 65598248 -136730099 + MIR SINE MIR 3 248 -14 2035 163 113 0 chr4 65598438 65598819 -136729528 + MSTB LTR MaLR 1 424 -2 30 59 0 0 chr4 65599084 65599135 -136729212 + AT_rich Low_complexity Low_complexity 1 51 0 33 66 0 0 chr4 65601493 65601554 -136726793 + AT_rich Low_complexity Low_complexity 1 61 0 24 32 0 0 chr4 65601655 65601686 -136726661 + AT_rich Low_complexity Low_complexity 1 31 0 2379 118 68 19 chr4 65601722 65602178 -136726169 + L1MA3 LINE L1 5850 6326 0 21 0 0 0 chr4 65603430 65603451 -136724896 + AT_rich Low_complexity Low_complexity 1 21 0 441 0 0 0 chr4 65603626 65603675 -136724672 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 24 32 0 0 chr4 65604014 65604045 -136724302 + AT_rich Low_complexity Low_complexity 1 31 0 4948 165 48 28 chr4 65604418 65605396 -136722951 - L1MA9 LINE L1 -61 6251 5254 2228 181 18 9 chr4 65605401 65605848 -136722499 + L1MA9 LINE L1 4785 5235 -911 306 233 30 3 chr4 65607113 65607218 -136721129 + MER61D LTR ERV1 341 414 -87 186 216 0 0 chr4 65607518 65607555 -136720792 - L2 LINE L2 -5 3267 3231 2310 98 0 16 chr4 65607586 65607903 -136720444 - AluSx SINE Alu 0 312 1 209 389 46 0 chr4 65607913 65608021 -136720326 + L2 LINE L2 3160 3272 0 1939 139 20 0 chr4 65608208 65608503 -136719844 + AluSq SINE Alu 4 304 -9 2268 71 7 3 chr4 65609096 65609413 -136718934 + AluY SINE Alu 1 318 0 31 58 0 0 chr4 65610237 65610289 -136718058 + AT_rich Low_complexity Low_complexity 1 52 0 307 298 36 0 chr4 65610294 65610378 -136717969 - L2 LINE L2 -2 3311 3225 23 0 0 0 chr4 65610720 65610743 -136717604 + AT_rich Low_complexity Low_complexity 1 23 0 231 61 0 0 chr4 65610874 65610907 -136717440 + (CA)n Simple_repeat Simple_repeat 2 34 0 2082 120 7 13 chr4 65612357 65612657 -136715690 - AluSx SINE Alu -8 304 7 214 314 47 120 chr4 65613396 65613778 -136714569 - L3 LINE CR1 -774 803 450 626 285 55 0 chr4 65614066 65614231 -136714116 + MIR SINE MIR 89 262 0 2440 150 18 2 chr4 65615186 65615579 -136712768 - Tigger1 DNA MER2_type 0 2418 2020 25 0 0 28 chr4 65615810 65615832 -136712515 + AT_rich Low_complexity Low_complexity 1 23 -12 2062 120 3 0 chr4 65615832 65616115 -136712232 - AluSc SINE Alu -25 284 1 25 0 0 28 chr4 65616115 65616128 -136712219 + AT_rich Low_complexity Low_complexity 23 35 0 1655 193 3 3 chr4 65617102 65617392 -136710955 - AluJo SINE Alu -22 290 1 1576 235 60 37 chr4 65617666 65618152 -136710195 - MLT1D LTR MaLR -8 497 1 466 284 129 70 chr4 65620415 65620688 -136707659 - MLT1L LTR MaLR -8 607 352 1870 138 13 10 chr4 65620688 65620999 -136707348 - AluSq SINE Alu 0 313 2 466 284 129 70 chr4 65620999 65621298 -136707049 - MLT1L LTR MaLR -263 352 1 21 36 0 0 chr4 65621579 65621607 -136706740 + AT_rich Low_complexity Low_complexity 1 28 0 7987 169 81 45 chr4 65622422 65624117 -136704230 - MER52A LTR ERV1 0 1755 1 21 36 0 0 chr4 65624470 65624498 -136703849 + AT_rich Low_complexity Low_complexity 1 28 0 236 301 168 0 chr4 65626630 65626743 -136701604 - L2 LINE L2 -2 3311 3180 1987 209 44 18 chr4 65626817 65627272 -136701075 + MLT1C LTR MaLR 1 467 0 297 356 112 16 chr4 65627557 65627745 -136700602 - MIR SINE MIR 0 262 57 198 150 0 0 chr4 65628734 65628774 -136699573 + (TA)n Simple_repeat Simple_repeat 2 41 0 23 33 0 0 chr4 65630621 65630651 -136697696 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr4 65630701 65630743 -136697604 + AT_rich Low_complexity Low_complexity 1 42 0 335 269 112 46 chr4 65630846 65631043 -136697304 + MIR SINE MIR 37 246 -16 2187 126 0 0 chr4 65631209 65631519 -136696828 - AluSg SINE Alu 0 310 1 33 56 0 0 chr4 65631544 65631598 -136696749 + AT_rich Low_complexity Low_complexity 1 54 0 27 62 0 0 chr4 65631819 65631867 -136696480 + AT_rich Low_complexity Low_complexity 1 48 0 756 278 130 57 chr4 65632283 65632690 -136695657 + MLT1K LTR MaLR 149 585 -3 1112 214 46 82 chr4 65632740 65632927 -136695420 - MLT1A2 LTR MaLR 0 374 182 342 0 0 0 chr4 65632927 65632965 -136695382 + (TG)n Simple_repeat Simple_repeat 1 38 0 336 24 0 0 chr4 65632964 65633005 -136695342 + (GA)n Simple_repeat Simple_repeat 1 41 0 * 1112 214 46 82 chr4 65632965 65633205 -136695142 - MLT1A2 LTR MaLR -192 182 1 193 380 42 0 chr4 65633254 65633325 -136695022 + L2 LINE L2 3190 3263 -9 420 269 34 8 chr4 65633551 65633670 -136694677 - MER58B DNA MER1_type 0 341 220 1999 111 6 35 chr4 65634221 65634536 -136693811 + AluSc SINE Alu 1 306 -3 21 71 0 0 chr4 65635882 65635924 -136692423 + AT_rich Low_complexity Low_complexity 1 42 0 392 259 92 23 chr4 65637286 65637417 -136690930 + MIR SINE MIR 117 256 -6 189 0 0 0 chr4 65637765 65637786 -136690561 + (A)n Simple_repeat Simple_repeat 1 21 0 10038 60 99 5 chr4 65638832 65640232 -136688115 + L1P LINE L1 2 1532 -4614 468 0 0 0 chr4 65740232 65740293 -136588054 - AluY SINE Alu -249 61 1 251 318 112 16 chr4 65740391 65740585 -136587762 + MIR SINE MIR 21 237 -25 225 0 0 0 chr4 65740595 65740620 -136587727 + (T)n Simple_repeat Simple_repeat 1 25 0 248 268 12 37 chr4 65740654 65740736 -136587611 + L2 LINE L2 3187 3266 -47 318 297 22 43 chr4 65740989 65741174 -136587173 - L1ME LINE L1 -445 5676 5496 484 54 5 118 chr4 65741359 65741562 -136586785 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 223 21 106 0 chr4 65741563 65741610 -136586737 + (TA)n Simple_repeat Simple_repeat 2 53 0 1471 231 62 18 chr4 65741747 65742136 -136586211 - MLT1C LTR MaLR -61 406 1 22050 41 1 0 chr4 65742395 65745898 -136582449 + L1PA4 LINE L1 2651 6155 0 358 104 0 0 chr4 65745913 65745961 -136582386 + LTR8 LTR ERV1 644 691 0 4646 216 50 58 chr4 65745961 65747334 -136581013 + MER39-int LTR ERV1 3416 4777 -159 433 255 79 60 chr4 65747523 65747578 -136580769 + MER39 LTR ERV1 8 60 -647 1723 173 0 7 chr4 65747578 65747867 -136580480 - AluJb SINE Alu -25 287 1 433 255 79 60 chr4 65747867 65748119 -136580228 + MER39 LTR ERV1 60 508 -199 365 233 93 73 chr4 65748240 65748390 -136579957 + MER34 LTR ERV1 385 537 -5 290 236 14 24 chr4 65748392 65748476 -136579871 - L1ME LINE L1 -530 5591 5512 230 325 13 0 chr4 65749033 65749110 -136579237 + MIR SINE MIR 61 138 -70 1504 125 0 74 chr4 65749333 65749589 -136578758 - MER1B DNA MER1_type -71 268 32 1833 10 5 0 chr4 65749704 65749907 -136578440 - AluYa5 SINE Alu -7 304 101 19081 73 10 0 chr4 65750007 65752512 -136575835 - L1P LINE L1 -3616 2530 1 4181 93 19 15 chr4 65752524 65753112 -136575235 - LTR8 LTR ERV1 -51 640 51 372 214 45 11 chr4 65753115 65753204 -136575143 - LTR49-int LTR ERV1 -1599 4732 4641 686 213 0 7 chr4 65753217 65753353 -136574994 + AluJo SINE Alu 1 135 -177 1499 201 11 14 chr4 65753354 65753676 -136574671 + AluJo SINE Alu 1 321 0 4822 211 74 50 chr4 65753678 65754893 -136573454 - LTR49-int LTR ERV1 -1606 3330 2062 1756 130 11 0 chr4 65754893 65755154 -136573193 - AluSg SINE Alu -11 299 36 4822 211 74 50 chr4 65755154 65755596 -136572751 - LTR49-int LTR ERV1 -2874 2062 1632 1210 192 29 13 chr4 65755607 65755920 -136572427 - LTR49-int LTR ERV1 -3483 1453 1136 198 0 0 0 chr4 65756086 65756108 -136572239 + (TA)n Simple_repeat Simple_repeat 2 23 0 2249 113 3 0 chr4 65756108 65756418 -136571929 - AluSx SINE Alu -1 311 1 1513 193 7 33 chr4 65756647 65756953 -136571394 - AluJo SINE Alu -13 299 2 319 145 79 26 chr4 65756992 65757068 -136571279 - MLT1J LTR MaLR -8 503 424 657 171 0 0 chr4 65757227 65757332 -136571015 - FRAM SINE Alu -52 124 20 234 296 103 69 chr4 65758095 65758298 -136570049 - L2 LINE L2 -259 3054 2845 2356 83 0 7 chr4 65759805 65760106 -136568241 + AluY SINE Alu 1 299 -12 295 167 0 0 chr4 65760546 65760594 -136567753 + L2 LINE L2 3262 3309 -4 206 42 0 0 chr4 65760910 65760934 -136567413 + (TG)n Simple_repeat Simple_repeat 2 25 0 7213 42 4 0 chr4 65761233 65762865 -136565482 - L1PA5 LINE L1 -4 6150 4482 1885 154 0 13 chr4 65762963 65763262 -136565085 + AluSx SINE Alu 4 298 -14 21 36 0 0 chr4 65764304 65764332 -136564015 + AT_rich Low_complexity Low_complexity 1 28 0 701 222 119 35 chr4 65764594 65764720 -136563627 + L1M4 LINE L1 4616 4730 -1416 4746 104 19 74 chr4 65764720 65765544 -136562803 + MER4E LTR ERV1 1 779 0 701 222 119 35 chr4 65765544 65765678 -136562669 + L1M4 LINE L1 4730 4898 -1248 761 313 157 18 chr4 65765875 65766550 -136561797 - L2 LINE L2 -4 3309 2541 193 322 11 23 chr4 65766802 65766889 -136561458 - L2 LINE L2 -1966 1348 1263 605 341 30 70 chr4 65766922 65767482 -136560865 - L2 LINE L2 -2660 654 117 2201 287 168 20 chr4 65767614 65768849 -136559498 - L2 LINE L2 0 3313 1895 274 330 107 19 chr4 65769358 65769461 -136558886 + L2 LINE L2 3144 3255 -17 496 209 27 80 chr4 65769902 65770089 -136558258 + MER69A DNA AcHobo 1 177 0 2251 93 20 7 chr4 65770194 65770494 -136557853 - AluSg SINE Alu -6 304 1 7016 34 31 2 chr4 65773203 65774350 -136553997 + L1PA4 LINE L1 4980 6151 -4 3224 81 22 33 chr4 65774383 65774841 -136553506 - MLT2A2 LTR ERVL 0 453 1 8566 76 19 4 chr4 65774841 65775961 -136552386 - HERVL-A2 LTR ERVL 0 5654 4518 * 20790 87 8 8 chr4 65775949 65776011 -136552336 - HERVL-A2 LTR ERVL -2867 2787 2726 4535 138 45 4 chr4 65776011 65776759 -136551588 - MER4E LTR ERV1 0 779 1 20790 87 8 8 chr4 65776759 65779483 -136548864 - HERVL-A2 LTR ERVL -2927 2727 1 3134 110 18 0 chr4 65779483 65779928 -136548419 - MLT2A2 LTR ERVL 0 453 1 216 0 0 0 chr4 65780120 65780144 -136548203 + (T)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr4 65782016 65782037 -136546310 + (TTTAG)n Simple_repeat Simple_repeat 2 22 0 209 244 0 0 chr4 65782562 65782603 -136545744 + (TA)n Simple_repeat Simple_repeat 1 41 0 1369 263 100 48 chr4 65783182 65783863 -136544484 - MER20B DNA MER1_type -15 768 53 1115 250 18 7 chr4 65785075 65785351 -136542996 - MLT1C LTR MaLR 0 467 189 1962 143 0 11 chr4 65785372 65785659 -136542688 - AluSx SINE Alu -28 284 1 29 60 0 0 chr4 65785670 65785720 -136542627 + AT_rich Low_complexity Low_complexity 1 50 0 13796 202 23 15 chr4 65785723 65786072 -136542275 - L1PB1 LINE L1 -8 6859 6514 351 0 0 0 chr4 65786072 65786111 -136542236 + (TG)n Simple_repeat Simple_repeat 2 40 0 13796 202 23 15 chr4 65786111 65787482 -136540865 - L1PB1 LINE L1 -353 6514 5156 225 0 0 0 chr4 65787482 65787507 -136540840 + (TTG)n Simple_repeat Simple_repeat 3 27 0 13796 202 23 15 chr4 65787507 65790738 -136537609 - L1PB1 LINE L1 -1711 5156 1853 471 73 0 0 chr4 65790738 65790806 -136537541 + (TC)n Simple_repeat Simple_repeat 2 69 0 288 0 0 0 chr4 65790806 65790838 -136537509 + (CA)n Simple_repeat Simple_repeat 1 32 0 4041 139 30 3 chr4 65791383 65792093 -136536254 - L1MA6 LINE L1 0 6300 5572 1470 165 85 11 chr4 65792135 65792407 -136535940 - AluJo SINE Alu -20 292 1 261 146 0 0 chr4 65792407 65792448 -136535899 - L1MA6 LINE L1 -727 5585 5545 1511 233 25 17 chr4 65792579 65792940 -136535407 + MLT1A1 LTR MaLR 1 364 -1 250 273 0 15 chr4 65793159 65793225 -136535122 + GA-rich Low_complexity Low_complexity 1 65 0 27 49 0 0 chr4 65793273 65793314 -136535033 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr4 65793449 65793474 -136534873 + AT_rich Low_complexity Low_complexity 1 25 0 1218 213 127 33 chr4 65794108 65794470 -136533877 + MSTD LTR MaLR 1 396 0 2326 141 67 10 chr4 65794574 65794979 -136533368 - MSTA LTR MaLR 0 428 1 8688 186 16 6 chr4 65794979 65796612 -136531735 - MSTA-int LTR MaLR 0 1651 1 2162 156 67 10 chr4 65796612 65797017 -136531330 - MSTA LTR MaLR 0 428 1 313 113 19 0 chr4 65797572 65797625 -136530722 + MADE1 DNA Mariner 27 80 0 302 200 115 62 chr4 65797760 65797843 -136530504 - MER69 DNA AcHobo -121 2405 2311 2401 69 7 0 chr4 65797843 65798148 -136530199 + AluY SINE Alu 1 307 -4 302 200 115 62 chr4 65798148 65798194 -136530153 - MER69 DNA AcHobo -215 2311 2269 466 283 69 12 chr4 65798284 65798457 -136529890 - MER69 DNA AcHobo -1494 1032 850 2041 164 17 0 chr4 65798484 65798844 -136529503 - L1PB4 LINE L1 -7 6149 5784 1054 136 9 8 chr4 65798846 65799076 -136529271 - L1PB4 LINE L1 -496 5660 5337 2039 136 0 0 chr4 65799077 65799371 -136528976 + AluSx SINE Alu 1 294 -18 231 244 0 24 chr4 65799374 65799456 -136528891 - L1MC4 LINE L1 -1339 6703 6624 222 150 0 0 chr4 65799477 65799517 -136528830 + (TA)n Simple_repeat Simple_repeat 2 41 0 3874 209 54 18 chr4 65799517 65799880 -136528467 - L1 LINE L1 -800 5346 4997 2177 130 11 17 chr4 65799880 65800235 -136528112 - THE1A LTR MaLR 0 355 3 3874 209 54 18 chr4 65800235 65801045 -136527302 - L1 LINE L1 -1149 4997 4078 2153 291 77 22 chr4 65801061 65801838 -136526509 - MER69 DNA AcHobo -1700 826 7 469 165 174 16 chr4 65802103 65802220 -136526127 + THE1C LTR MaLR 1 136 -239 2038 219 54 57 chr4 65802220 65803036 -136525311 + LTR27 LTR ERV1 2 878 -128 926 124 7 7 chr4 65803036 65803173 -136525174 - AluSq/x SINE Alu -174 138 2 185 206 0 0 chr4 65803232 65803266 -136525081 + L2 LINE L2 3257 3290 -23 21 57 0 0 chr4 65803371 65803406 -136524941 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr4 65806012 65806048 -136522299 + AT_rich Low_complexity Low_complexity 1 36 0 234 370 108 30 chr4 65806195 65806657 -136521690 - L2 LINE L2 -10 3303 2806 3939 181 74 13 chr4 65806692 65807027 -136521320 - L1MA9 LINE L1 -171 6205 5892 3503 187 84 59 chr4 65807027 65807936 -136520411 - MER21A LTR ERV1 0 931 1 3939 181 74 13 chr4 65807936 65808917 -136519430 - L1MA9 LINE L1 -484 5892 4822 1067 204 5 24 chr4 65808972 65809183 -136519164 - AluJo SINE Alu -105 207 1 578 152 10 0 chr4 65809184 65809283 -136519064 - L1MA9 LINE L1 -1373 4837 4738 * 968 220 38 141 chr4 65809282 65809837 -136518510 - L1MA9 LINE L1 -4668 1463 966 385 358 59 47 chr4 65810988 65811480 -136516867 - L1MA9 LINE L1 -5637 504 7 434 291 83 58 chr4 65811559 65811837 -136516510 + MLT1H LTR MaLR 22 306 -243 286 220 42 102 chr4 65811895 65812013 -136516334 + MLT1H LTR MaLR 423 533 -16 6445 107 3 0 chr4 65812785 65813677 -136514670 - THE1B-int LTR MaLR -685 895 1 2219 95 59 39 chr4 65813677 65814034 -136514313 - THE1B LTR MaLR 0 364 1 365 210 63 40 chr4 65814042 65814199 -136514148 - L1MB1 LINE L1 -6 6162 6019 * 889 232 43 44 chr4 65814192 65814459 -136513888 - L1M3c LINE L1 -5855 1182 20 220 204 0 0 chr4 65814574 65814628 -136513719 + T-rich Low_complexity Low_complexity 1 54 0 245 337 93 70 chr4 65815712 65815896 -136512451 + L2 LINE L2 2556 2734 -538 2190 129 0 0 chr4 65815896 65816207 -136512140 - AluSx SINE Alu -1 311 1 245 337 93 70 chr4 65816207 65816672 -136511675 + L2 LINE L2 2734 3199 -73 2377 136 8 0 chr4 65817344 65817698 -136510649 + THE1B LTR MaLR 7 363 -1 669 204 28 57 chr4 65817855 65817969 -136510378 + MLT1D LTR MaLR 1 110 -395 3323 90 8 6 chr4 65817969 65818438 -136509909 + L1PA7 LINE L1 5685 6154 0 669 204 28 57 chr4 65818438 65818499 -136509848 + MLT1D LTR MaLR 110 171 -334 * 952 204 32 19 chr4 65818494 65818710 -136509637 + MLT1D LTR MaLR 287 505 0 510 241 196 6 chr4 65818711 65818869 -136509478 - MIR SINE MIR -72 190 3 232 128 26 0 chr4 65819062 65819101 -136509246 + MLT1D LTR MaLR 348 387 -118 250 335 125 0 chr4 65819317 65819469 -136508878 + MIR3 SINE MIR 38 208 0 180 329 63 0 chr4 65819725 65819804 -136508543 - MIR SINE MIR -64 198 115 880 264 199 55 chr4 65819921 65820462 -136507885 + MLT1G1 LTR MaLR 1 573 -17 282 268 0 0 chr4 65821097 65821168 -136507179 + MLT1L LTR MaLR 5 75 -540 22 35 0 0 chr4 65823052 65823081 -136505266 + AT_rich Low_complexity Low_complexity 1 29 0 443 306 114 9 chr4 65824365 65824584 -136503763 - MIR SINE MIR 0 262 21 34 0 0 0 chr4 65825110 65825144 -136503203 + AT_rich Low_complexity Low_complexity 1 34 0 201 343 14 0 chr4 65825338 65825408 -136502939 - MER5A DNA MER1_type -83 106 36 408 299 70 87 chr4 65826841 65827621 -136500726 + L1ME3A LINE L1 474 1240 -4879 686 305 123 48 chr4 65827802 65829140 -136499207 + L1M4 LINE L1 3588 5026 -1120 22 0 0 0 chr4 65829203 65829225 -136499122 + AT_rich Low_complexity Low_complexity 1 22 0 535 103 0 0 chr4 65829225 65829303 -136499044 + MER41A LTR ERV1 400 477 -77 23 33 0 0 chr4 65829319 65829349 -136498998 + AT_rich Low_complexity Low_complexity 1 30 0 272 239 99 70 chr4 65829372 65829615 -136498732 + L1M4 LINE L1 5135 5384 -762 1574 236 87 22 chr4 65829725 65830366 -136497981 - MER69 DNA AcHobo -9 2517 1835 2188 265 64 32 chr4 65830395 65830654 -136497693 - MER69 DNA AcHobo -1652 874 625 1632 92 127 64 chr4 65830654 65830937 -136497410 + AluSg SINE Alu 1 301 -9 2188 265 64 32 chr4 65830937 65831457 -136496890 - MER69 DNA AcHobo -1901 625 70 375 250 68 6 chr4 65831457 65831633 -136496714 + L1ME3A LINE L1 2209 2395 -3734 4143 234 31 10 chr4 65831724 65833319 -136495028 - L1MB7 LINE L1 -8 6176 4541 804 285 84 27 chr4 65833353 65834112 -136494235 + L1ME3A LINE L1 5126 5935 -218 2819 157 2 4 chr4 65834272 65834737 -136493610 + L1PA13 LINE L1 3756 4219 -1927 3024 104 4 38 chr4 65834737 65835363 -136492984 + L1PA13 LINE L1 5098 5693 -475 3217 73 10 47 chr4 65835828 65836318 -136492029 + L1PA13 LINE L1 5677 6148 -15 2323 90 0 10 chr4 65836404 65836714 -136491633 - AluSq SINE Alu -6 307 1 420 20 0 0 chr4 65837068 65837117 -136491230 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 490 272 36 72 chr4 65837909 65838104 -136490243 + MIR SINE MIR 74 261 -1 1216 290 78 56 chr4 65838283 65838859 -136489488 + MLT1E LTR MaLR 5 593 0 197 311 0 0 chr4 65839250 65839295 -136489052 + L2 LINE L2 3193 3237 -35 349 292 31 12 chr4 65839357 65839462 -136488885 + MIR SINE MIR 13 117 -91 2915 54 3 0 chr4 65839538 65839892 -136488455 - THE1A LTR MaLR 0 355 1 23 0 0 0 chr4 65840183 65840206 -136488141 + AT_rich Low_complexity Low_complexity 1 23 0 1924 178 80 62 chr4 65840434 65840922 -136487425 - LOR1a LTR ERV1 0 497 1 1880 127 26 19 chr4 65841029 65841336 -136487011 + AluSx SINE Alu 1 309 -3 551 232 144 88 chr4 65841663 65842141 -136486206 + L1MC5 LINE L1 7408 7912 -49 1279 229 0 0 chr4 65842430 65842648 -136485699 + Tigger7 DNA MER2_type 1 218 -2269 615 177 9 18 chr4 65842648 65842761 -136485586 + Tigger7 DNA MER2_type 2475 2586 -1 21 0 0 0 chr4 65842784 65842805 -136485542 + AT_rich Low_complexity Low_complexity 1 21 0 1049 316 101 4 chr4 65842987 65843494 -136484853 - L2 LINE L2 0 3313 2752 698 277 35 91 chr4 65844646 65844841 -136483506 - MLT1J LTR MaLR -2 509 343 1302 143 176 37 chr4 65844841 65845114 -136483233 - AluSq SINE Alu -1 312 2 698 277 35 91 chr4 65845114 65845293 -136483054 - MLT1J LTR MaLR -168 343 156 305 115 77 0 chr4 65845358 65845410 -136482937 - MADE1 DNA Mariner -24 56 1 580 246 0 8 chr4 65845802 65845932 -136482415 + FLAM_C SINE Alu 5 133 0 21 0 0 0 chr4 65846405 65846426 -136481921 + AT_rich Low_complexity Low_complexity 1 21 0 30866 109 13 61 chr4 65846647 65853104 -136475243 + L1PA7 LINE L1 12 6151 -3 189 280 20 0 chr4 65853104 65853154 -136475193 - L2 LINE L2 -9 3304 3254 382 190 13 14 chr4 65854812 65854895 -136473452 - MSTD LTR MaLR -66 324 235 27 0 0 0 chr4 65854974 65855001 -136473346 + AT_rich Low_complexity Low_complexity 1 27 0 380 37 19 0 chr4 65855026 65855080 -136473267 + (TG)n Simple_repeat Simple_repeat 1 55 0 793 271 57 36 chr4 65856083 65856330 -136472017 - MIR SINE MIR 0 262 11 273 362 79 7 chr4 65856707 65856859 -136471488 + MIR3 SINE MIR 40 202 -6 296 285 34 92 chr4 65857539 65857746 -136470601 - MER117 DNA MER1_type 0 197 3 436 217 17 75 chr4 65858622 65858742 -136469605 - MER5B DNA MER1_type -2 176 64 243 0 0 0 chr4 65858744 65858771 -136469576 + (T)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr4 65859050 65859079 -136469268 + AT_rich Low_complexity Low_complexity 1 29 0 984 97 0 32 chr4 65859148 65859303 -136469044 + L1PA16 LINE L1 6017 6166 0 245 208 14 0 chr4 65860409 65860481 -136467866 + (CA)n Simple_repeat Simple_repeat 2 74 0 186 43 0 0 chr4 65860483 65860506 -136467841 + (TG)n Simple_repeat Simple_repeat 2 24 0 197 261 189 27 chr4 65860790 65860901 -136467446 + MER5A DNA MER1_type 24 152 -37 485 42 42 0 chr4 65861466 65861537 -136466810 - AluSp/q SINE Alu -8 305 232 240 291 128 1 chr4 65861925 65862019 -136466328 - MIR SINE MIR -73 135 35 231 281 164 31 chr4 65862314 65862442 -136465905 + MIR SINE MIR 112 256 -6 23 33 0 0 chr4 65864454 65864484 -136463863 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 65865261 65865284 -136463063 + AT_rich Low_complexity Low_complexity 1 23 0 734 234 0 18 chr4 65866093 65866260 -136462087 + FRAM SINE Alu 1 164 -2 22 0 0 0 chr4 65869105 65869127 -136459220 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr4 65869563 65869601 -136458746 + AT_rich Low_complexity Low_complexity 1 38 0 229 172 0 52 chr4 65869674 65869732 -136458615 + GA-rich Low_complexity Low_complexity 2 56 0 21 0 0 0 chr4 65873681 65873702 -136454645 + AT_rich Low_complexity Low_complexity 1 21 0 484 330 34 6 chr4 65874434 65874613 -136453734 - MIR3 SINE MIR -9 199 16 21 36 0 0 chr4 65875797 65875825 -136452522 + AT_rich Low_complexity Low_complexity 1 28 0 478 321 146 44 chr4 65876034 65876445 -136451902 + L3 LINE CR1 1053 1505 -72 22 56 0 0 chr4 65877489 65877525 -136450822 + AT_rich Low_complexity Low_complexity 1 36 0 246 244 32 24 chr4 65878226 65878349 -136449998 + A-rich Low_complexity Low_complexity 2 125 0 30 0 0 0 chr4 65878596 65878626 -136449721 + AT_rich Low_complexity Low_complexity 1 30 0 5182 179 39 35 chr4 65879006 65880164 -136448183 + L1MD2 LINE L1 5189 6345 -14 287 167 0 0 chr4 65880170 65880212 -136448135 + Alu SINE Alu 1 42 -257 195 239 179 0 chr4 65882913 65882980 -136445367 + L2 LINE L2 3234 3312 -1 1888 167 0 3 chr4 65883469 65883774 -136444573 + AluSx SINE Alu 6 309 -3 21 0 0 0 chr4 65885156 65885177 -136443170 + AT_rich Low_complexity Low_complexity 1 21 0 258 336 47 9 chr4 65885223 65885330 -136443017 - MIR3 SINE MIR -15 193 83 22 0 0 0 chr4 65885343 65885365 -136442982 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr4 65885504 65885536 -136442811 + AT_rich Low_complexity Low_complexity 1 32 0 644 304 60 25 chr4 65886285 65886755 -136441592 - L1ME LINE L1 -473 5689 5202 30 0 0 0 chr4 65888504 65888534 -136439813 + AT_rich Low_complexity Low_complexity 1 30 0 35 0 0 0 chr4 65888752 65888787 -136439560 + AT_rich Low_complexity Low_complexity 1 35 0 246 323 8 46 chr4 65889247 65889377 -136438970 + MIR SINE MIR 28 152 -110 235 156 0 0 chr4 65890240 65890285 -136438062 - LTR66 LTR ERVL -172 438 394 241 171 14 14 chr4 65890297 65890367 -136437980 + (TA)n Simple_repeat Simple_repeat 1 70 0 24 53 0 0 chr4 65892319 65892357 -136435990 + AT_rich Low_complexity Low_complexity 1 38 0 1424 210 14 0 chr4 65892590 65892881 -136435466 + AluJo SINE Alu 1 295 -17 2292 85 0 0 chr4 65892882 65893213 -136435134 + AluSg SINE Alu 1 331 0 324 148 0 0 chr4 65896182 65896243 -136432104 + (GA)n Simple_repeat Simple_repeat 2 62 0 28 0 0 0 chr4 65898106 65898134 -136430213 + AT_rich Low_complexity Low_complexity 1 28 0 449 304 153 29 chr4 65898259 65898675 -136429672 + L1ME3A LINE L1 5677 6155 -15 543 279 79 116 chr4 65898824 65899282 -136429065 + L2 LINE L2 2805 3245 -68 239 234 16 16 chr4 65899294 65899358 -136428989 + (TA)n Simple_repeat Simple_repeat 2 65 0 397 284 132 21 chr4 65899386 65899576 -136428771 - MIR SINE MIR -48 214 4 28 79 0 0 chr4 65899985 65900048 -136428299 + AT_rich Low_complexity Low_complexity 1 63 0 306 324 119 55 chr4 65900401 65900836 -136427511 + L2 LINE L2 2829 3291 -22 23 0 0 0 chr4 65901164 65901187 -136427160 + AT_rich Low_complexity Low_complexity 1 23 0 633 294 111 8 chr4 65901212 65901447 -136426900 - MIR SINE MIR -2 260 2 22 0 0 0 chr4 65901517 65901539 -136426808 + AT_rich Low_complexity Low_complexity 1 22 0 1735 160 0 24 chr4 65902544 65902837 -136425510 + AluSx SINE Alu 11 296 -16 213 132 0 0 chr4 65903923 65903961 -136424386 + (CA)n Simple_repeat Simple_repeat 2 39 0 195 42 0 0 chr4 65904161 65904185 -136424162 + (GA)n Simple_repeat Simple_repeat 1 24 0 204 211 0 0 chr4 65904958 65904996 -136423351 - MIR SINE MIR -3 259 222 222 255 333 0 chr4 65905496 65905598 -136422749 - MIR SINE MIR -27 235 100 351 253 21 0 chr4 65907078 65907173 -136421174 - MER58 DNA MER1_type -1 2419 2323 360 287 0 11 chr4 65907188 65907282 -136421065 - MER58 DNA MER1_type -2327 93 1 21 57 0 0 chr4 65907314 65907349 -136420998 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr4 65907453 65907483 -136420864 + AT_rich Low_complexity Low_complexity 1 30 0 31 0 0 0 chr4 65907624 65907655 -136420692 + AT_rich Low_complexity Low_complexity 1 31 0 465 298 182 33 chr4 65908051 65908414 -136419933 + MLT1J1 LTR MaLR 1 417 -29 24 32 0 0 chr4 65908433 65908464 -136419883 + AT_rich Low_complexity Low_complexity 1 31 0 570 235 0 30 chr4 65908900 65909032 -136419315 - MIR SINE MIR -106 156 29 34 72 0 0 chr4 65909105 65909174 -136419173 + AT_rich Low_complexity Low_complexity 1 69 0 333 0 0 0 chr4 65909449 65909486 -136418861 + (TG)n Simple_repeat Simple_repeat 2 38 0 27 49 0 0 chr4 65911273 65911314 -136417033 + AT_rich Low_complexity Low_complexity 1 41 0 673 270 51 62 chr4 65913476 65913737 -136414610 + MIR SINE MIR 5 262 0 704 203 128 11 chr4 65913923 65914110 -136414237 - MER3 DNA MER1_type 0 209 1 23 68 0 0 chr4 65914280 65914324 -136414023 + AT_rich Low_complexity Low_complexity 1 44 0 933 240 34 37 chr4 65914504 65914800 -136413547 - L1MA9 LINE L1 -38 6274 5980 22 56 0 0 chr4 65914875 65914911 -136413436 + AT_rich Low_complexity Low_complexity 1 36 0 2250 106 0 3 chr4 65916493 65916794 -136411553 - AluSg SINE Alu -10 300 1 14738 123 30 15 chr4 65917550 65919932 -136408415 - Tigger1 DNA MER2_type 0 2418 1 323 331 96 18 chr4 65920019 65920185 -136408162 + MIR SINE MIR 13 191 -71 22 70 0 0 chr4 65921912 65921955 -136406392 + AT_rich Low_complexity Low_complexity 1 43 0 801 108 0 8 chr4 65923450 65923570 -136404777 + AluSg/x SINE Alu 190 308 -1 480 307 104 48 chr4 65923834 65924990 -136403357 + L1M4 LINE L1 3702 4922 -1224 217 247 0 27 chr4 65925065 65925099 -136403248 + A-rich Low_complexity Low_complexity 5 38 -37 2336 98 0 0 chr4 65925099 65925405 -136402942 + AluSc SINE Alu 4 309 0 217 247 0 27 chr4 65925405 65925443 -136402904 + A-rich Low_complexity Low_complexity 38 75 0 28 29 0 0 chr4 65925519 65925554 -136402793 + AT_rich Low_complexity Low_complexity 1 35 0 287 305 123 35 chr4 65927013 65927216 -136401131 + L2 LINE L2 215 435 -2879 2263 107 0 0 chr4 65927544 65927835 -136400512 - AluSc SINE Alu -18 291 1 2081 118 0 31 chr4 65927870 65928193 -136400154 - AluSq SINE Alu 0 313 1 250 287 190 35 chr4 65928194 65928368 -136399979 + L2 LINE L2 1224 1424 -1890 673 225 235 5 chr4 65928864 65929064 -136399283 + MIR SINE MIR 3 248 -14 22 35 0 0 chr4 65929404 65929433 -136398914 + AT_rich Low_complexity Low_complexity 1 29 0 1348 245 40 47 chr4 65929855 65930304 -136398043 + MER39 LTR ERV1 260 705 -2 21 36 0 0 chr4 65930929 65930957 -136397390 + AT_rich Low_complexity Low_complexity 1 28 0 1747 254 70 59 chr4 65931017 65931799 -136396548 + MER21B LTR ERV1 13 803 -60 241 287 37 9 chr4 65931827 65931935 -136396412 - L1ME4a LINE L1 -69 6052 5942 31 76 0 0 chr4 65932013 65932079 -136396268 + AT_rich Low_complexity Low_complexity 1 66 0 1926 176 24 0 chr4 65932296 65932636 -136395711 - MER7A DNA MER2_type 0 346 1 321 176 48 133 chr4 65932655 65932820 -136395527 - L1MCa LINE L1 -4350 2076 1926 1486 249 137 44 chr4 65933009 65933644 -136394703 + L2 LINE L2 1517 2210 -1104 833 301 52 4 chr4 65933679 65933951 -136394396 + MER115 DNA AcHobo 295 579 -114 233 269 0 0 chr4 65933954 65934032 -136394315 - L1MC4 LINE L1 -1350 6692 6615 324 120 0 0 chr4 65934036 65934086 -136394261 + (TA)n Simple_repeat Simple_repeat 1 50 0 398 234 77 160 chr4 65934164 65934501 -136393846 + MLT1L LTR MaLR 110 521 -93 303 225 146 34 chr4 65934636 65934814 -136393533 + MER113 DNA MER1_type? 33 230 -291 449 263 150 16 chr4 65934864 65935111 -136393236 + L2 LINE L2 2215 2494 -820 1850 124 45 17 chr4 65935120 65935410 -136392937 + AluSq SINE Alu 1 298 -15 405 223 0 0 chr4 65935410 65935504 -136392843 + (TATG)n Simple_repeat Simple_repeat 3 96 0 22 0 0 0 chr4 65935618 65935640 -136392707 + AT_rich Low_complexity Low_complexity 1 22 0 485 311 42 21 chr4 65937860 65938053 -136390294 - MIR SINE MIR -55 207 11 41 48 0 0 chr4 65938970 65939032 -136389315 + AT_rich Low_complexity Low_complexity 1 62 0 553 327 88 20 chr4 65939136 65939442 -136388905 - L2 LINE L2 -452 2862 2536 22 70 0 0 chr4 65939880 65939923 -136388424 + AT_rich Low_complexity Low_complexity 1 43 0 1777 171 0 16 chr4 65940359 65940669 -136387678 + AluJo SINE Alu 1 305 -7 254 352 64 0 chr4 65940792 65940917 -136387430 - MIR SINE MIR -98 164 32 28 71 0 0 chr4 65941282 65941338 -136387009 + AT_rich Low_complexity Low_complexity 1 56 0 213 263 35 0 chr4 65941714 65941771 -136386576 - L2 LINE L2 -5 3308 3250 2118 116 0 10 chr4 65942566 65942877 -136385470 + AluSq SINE Alu 1 308 -5 388 254 35 133 chr4 65943996 65944252 -136384095 + MER46C DNA MER2_type 1 231 -107 605 276 13 6 chr4 65944252 65944408 -136383939 + MER46C DNA MER2_type 181 337 -1 317 314 88 6 chr4 65946103 65946239 -136382108 + L1ME3A LINE L1 5732 5884 -286 1698 178 31 0 chr4 65946239 65946531 -136381816 + AluJb SINE Alu 1 301 -11 317 314 88 6 chr4 65946531 65946553 -136381794 + L1ME3A LINE L1 5884 5903 -267 1591 201 0 13 chr4 65946991 65947304 -136381043 + AluJo SINE Alu 1 309 -3 273 135 0 0 chr4 65947707 65947759 -136380588 + (GA)n Simple_repeat Simple_repeat 1 52 0 2050 142 7 0 chr4 65947852 65948191 -136380156 + AluSx SINE Alu 1 341 0 333 0 0 0 chr4 65948241 65948278 -136380069 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr4 65948533 65948554 -136379793 + AT_rich Low_complexity Low_complexity 1 21 0 275 106 64 11 chr4 65949485 65949579 -136378768 + (TA)n Simple_repeat Simple_repeat 1 99 0 466 136 0 11 chr4 65950108 65950196 -136378151 + L1PA13 LINE L1 6075 6161 -2 190 130 19 56 chr4 65950380 65950434 -136377913 + (CATA)n Simple_repeat Simple_repeat 3 54 0 351 0 0 0 chr4 65950451 65950490 -136377857 + (CA)n Simple_repeat Simple_repeat 2 40 0 356 280 187 40 chr4 65950502 65950652 -136377695 - MIR SINE MIR -29 179 8 2649 209 40 51 chr4 65950857 65951584 -136376763 - L1MB7 LINE L1 -10 6174 5456 22 88 0 0 chr4 65953100 65953157 -136375190 + AT_rich Low_complexity Low_complexity 1 57 0 2008 102 0 31 chr4 65953968 65954338 -136374009 + AluSp SINE Alu 1 361 0 632 200 91 6 chr4 65955281 65955446 -136372901 + L1MB7 LINE L1 6006 6184 0 315 384 23 0 chr4 65956209 65956342 -136372005 + MIR3 SINE MIR 46 181 -27 459 120 43 54 chr4 65956665 65956757 -136371590 + FLAM_A SINE Alu 34 124 -18 696 259 32 0 chr4 65956859 65957017 -136371330 - FRAM SINE Alu -3 163 1 239 255 0 0 chr4 65959889 65959936 -136368411 + T-rich Low_complexity Low_complexity 3 49 0 3964 133 61 73 chr4 65960333 65960702 -136367645 + L1MC1 LINE L1 5526 5898 -435 1855 176 0 3 chr4 65960702 65961014 -136367333 + AluJb SINE Alu 1 311 -1 3964 133 61 73 chr4 65961014 65961462 -136366885 + L1MC1 LINE L1 5898 6333 0 22 0 0 0 chr4 65962196 65962218 -136366129 + AT_rich Low_complexity Low_complexity 1 22 0 278 294 59 59 chr4 65962312 65962448 -136365899 + MER5B DNA MER1_type 27 162 -16 340 313 22 49 chr4 65962952 65963176 -136365171 + L1ME3A LINE L1 5735 5952 -218 1648 111 19 15 chr4 65963391 65963653 -136364694 + L1PA16 LINE L1 5900 6162 -4 216 135 0 0 chr4 65964211 65964248 -136364099 + (A)n Simple_repeat Simple_repeat 1 37 0 1744 116 34 8 chr4 65964573 65964841 -136363506 - THE1B LTR MaLR 0 364 90 246 276 8 57 chr4 65964841 65964964 -136363383 + L2 LINE L2 3023 3139 -174 298 308 19 29 chr4 65965170 65965274 -136363073 + L2 LINE L2 3205 3307 -6 1760 288 61 40 chr4 65965351 65966341 -136362006 + L2 LINE L2 2304 3311 -2 234 320 97 23 chr4 65966614 65966789 -136361558 + MIR SINE MIR 34 221 -41 1736 172 0 3 chr4 65967062 65967365 -136360982 + AluJb SINE Alu 1 302 -10 7555 31 1 0 chr4 65968511 65970205 -136358142 + L1PA3 LINE L1 4492 6155 0 465 277 59 40 chr4 65971079 65971281 -136357066 - MIR SINE MIR 0 262 57 287 287 46 0 chr4 65971286 65971373 -136356974 - MER81 DNA DNA 0 114 24 1575 174 146 34 chr4 65973164 65973520 -136354827 + MSTD LTR MaLR 1 396 0 21 36 0 0 chr4 65974168 65974196 -136354151 + AT_rich Low_complexity Low_complexity 1 28 0 314 247 0 10 chr4 65974445 65974541 -136353806 + Tigger5 DNA MER2_type 2 2323 0 850 190 25 6 chr4 65974702 65974860 -136353487 + AluJb SINE Alu 128 288 -24 31 0 0 0 chr4 65975098 65975129 -136353218 + AT_rich Low_complexity Low_complexity 1 31 0 221 409 11 11 chr4 65975689 65975782 -136352565 - MIR SINE MIR -92 116 24 2670 155 7 4 chr4 65976163 65976620 -136351727 + L1PA15 LINE L1 5708 6165 0 37 52 0 0 chr4 65976688 65976746 -136351601 + AT_rich Low_complexity Low_complexity 1 58 0 207 321 0 49 chr4 65976811 65976892 -136351455 + L2 LINE L2 3023 3099 -173 29 0 0 0 chr4 65977038 65977067 -136351280 + AT_rich Low_complexity Low_complexity 1 29 0 956 261 151 27 chr4 65977069 65977618 -136350729 + L1MC4 LINE L1 7266 7882 -160 1375 138 5 5 chr4 65977622 65977832 -136350515 - AluSg/x SINE Alu -17 295 86 258 260 40 60 chr4 65977834 65977984 -136350363 + L1MC4 LINE L1 7871 8017 -25 2081 97 4 4 chr4 65978866 65979174 -136349173 + AluSc SINE Alu 1 308 0 750 260 72 25 chr4 65979307 65979604 -136348743 + L2 LINE L2 2707 3022 -291 1853 139 69 28 chr4 65981055 65981415 -136346932 + THE1C LTR MaLR 1 375 0 423 0 0 0 chr4 65981449 65981496 -136346851 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 270 125 0 54 chr4 65982252 65982351 -136345996 + AluSp/q SINE Alu 249 303 0 6533 140 15 6 chr4 65982502 65984301 -136344046 + L1PA8A LINE L1 4317 6125 -6 1487 270 125 48 chr4 65985026 65986035 -136342312 - L2 LINE L2 -223 3090 1988 200 268 0 0 chr4 65986337 65986378 -136341969 - L2 LINE L2 -17 3255 3215 2116 127 0 10 chr4 65987379 65987678 -136340669 - AluJb SINE Alu -14 298 3 1720 176 7 3 chr4 65987988 65988290 -136340057 - AluSx SINE Alu -9 303 1 544 273 107 50 chr4 65988503 65988745 -136339602 + MER115 DNA AcHobo 428 683 -10 37 23 0 0 chr4 65988790 65988834 -136339513 + AT_rich Low_complexity Low_complexity 1 44 0 2244 176 40 5 chr4 65988892 65989336 -136339011 + MER65C LTR ERV1 2 461 0 195 358 52 45 chr4 65989389 65989523 -136338824 + L2 LINE L2 2905 3039 -233 2043 119 10 0 chr4 65990165 65990458 -136337889 - AluSx SINE Alu -16 296 1 597 263 0 53 chr4 65992259 65992487 -136335860 - L1MA9 LINE L1 -38 6274 6059 1458 245 124 1 chr4 65993075 65993910 -136334437 + L1ME2 LINE L1 4857 5801 -361 28826 28 14 1 chr4 65993911 65999946 -136328401 + L1HS LINE L1 1 6155 0 546 289 26 78 chr4 65999949 66000106 -136328241 + L1ME2 LINE L1 5793 5957 -207 2418 95 0 0 chr4 66000106 66000410 -136327937 + AluSg SINE Alu 1 304 -6 546 289 26 78 chr4 66000410 66000636 -136327711 + L1ME2 LINE L1 5957 6156 -8 225 0 0 0 chr4 66000986 66001011 -136327336 + (T)n Simple_repeat Simple_repeat 1 25 0 377 352 57 16 chr4 66001020 66001213 -136327134 + LTR67 LTR ERVL 24 224 -333 198 103 0 0 chr4 66001219 66001248 -136327099 + (CAG)n Simple_repeat Simple_repeat 1 29 0 325 289 7 67 chr4 66001272 66001407 -136326940 + LTR67 LTR ERVL 357 483 -74 701 160 0 8 chr4 66001817 66001959 -136326388 + FLAM_C SINE Alu 1 141 0 607 287 63 92 chr4 66002109 66002775 -136325572 - L2 LINE L2 -37 3276 2608 303 28 0 0 chr4 66003059 66003095 -136325252 + (TG)n Simple_repeat Simple_repeat 1 36 0 311 173 27 0 chr4 66003153 66003228 -136325119 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 26 64 0 0 chr4 66003443 66003490 -136324857 + AT_rich Low_complexity Low_complexity 1 47 0 256 237 0 17 chr4 66003673 66003732 -136324615 + GA-rich Low_complexity Low_complexity 3 60 0 29 28 0 0 chr4 66004230 66004266 -136324081 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr4 66006581 66006604 -136321743 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr4 66006789 66006818 -136321529 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 66006874 66006902 -136321445 + AT_rich Low_complexity Low_complexity 1 28 0 4073 161 35 17 chr4 66006971 66007790 -136320557 + L1 LINE L1 3424 4257 -1889 288 222 0 0 chr4 66007810 66007882 -136320465 + (TATG)n Simple_repeat Simple_repeat 3 74 0 391 241 139 22 chr4 66008296 66008433 -136319914 + MIR SINE MIR 21 173 -89 236 260 82 0 chr4 66009047 66009120 -136319227 + MARNA DNA Mariner 259 337 -249 2361 76 0 7 chr4 66009680 66009981 -136318366 - AluY SINE Alu -12 299 1 236 239 0 0 chr4 66010008 66010054 -136318293 + L2 LINE L2 3004 3049 -223 1581 191 79 18 chr4 66010472 66010812 -136317535 - MLT1A1 LTR MaLR -2 363 3 35 0 0 0 chr4 66011812 66011847 -136316500 + AT_rich Low_complexity Low_complexity 1 35 0 204 40 0 0 chr4 66011958 66011983 -136316364 + (TAGA)n Simple_repeat Simple_repeat 1 25 0 185 290 113 0 chr4 66012472 66012534 -136315813 - L3 LINE CR1 -1350 227 159 337 231 119 22 chr4 66012667 66012801 -136315546 - L2 LINE L2 -4 3309 3163 891 295 36 0 chr4 66013146 66013370 -136314977 - MIR SINE MIR 0 262 31 1628 148 88 28 chr4 66013613 66013975 -136314372 + Tigger3(Golem) DNA MER2_type 1 3027 -2 2171 168 57 2 chr4 66014044 66014450 -136313897 + MSTA LTR MaLR 1 428 0 795 298 109 45 chr4 66014830 66015279 -136313068 - L2 LINE L2 0 3313 2836 * 2144 254 68 11 chr4 66015267 66015898 -136312449 - L2 LINE L2 -882 2432 1766 222 361 43 98 chr4 66015939 66016307 -136312040 - L2 LINE L2 -1 3271 2924 478 298 117 89 chr4 66016715 66017175 -136311172 + L2 LINE L2 2841 3313 0 483 153 153 9 chr4 66017261 66017372 -136310975 + L1MC3 LINE L1 7467 7593 -192 932 197 39 10 chr4 66017372 66017575 -136310772 + L1MC2 LINE L1 6136 6344 0 359 281 98 6 chr4 66017781 66017945 -136310402 - L1MC4a LINE L1 -1921 5887 5709 1915 114 46 0 chr4 66018170 66018451 -136309896 + AluSc SINE Alu 1 294 -15 728 301 122 34 chr4 66018921 66019363 -136308984 + MLT1J LTR MaLR 8 488 -23 1802 313 124 12 chr4 66021182 66022156 -136306191 + L2 LINE L2 1959 3034 -279 707 168 123 0 chr4 66022214 66022369 -136305978 + L1M4 LINE L1 5446 5619 -565 565 316 41 20 chr4 66022649 66022893 -136305454 + MIR SINE MIR 1 249 -13 2161 112 0 0 chr4 66022896 66023183 -136305164 - AluSx SINE Alu -4 308 22 531 254 0 24 chr4 66023393 66023519 -136304828 - FLAM_A SINE Alu -6 127 5 28 61 0 0 chr4 66023589 66023638 -136304709 + AT_rich Low_complexity Low_complexity 1 49 0 328 289 21 0 chr4 66024554 66024651 -136303696 + L1MC4 LINE L1 6611 6709 -1333 1330 219 36 15 chr4 66025254 66025587 -136302760 + MER39 LTR ERV1 367 706 -1 32 26 0 0 chr4 66028898 66028937 -136299410 + AT_rich Low_complexity Low_complexity 1 39 0 44 35 0 0 chr4 66029352 66029410 -136298937 + AT_rich Low_complexity Low_complexity 1 58 0 369 0 0 0 chr4 66030072 66030113 -136298234 + (CA)n Simple_repeat Simple_repeat 2 42 0 2081 107 0 35 chr4 66031250 66031560 -136296787 - AluSq SINE Alu -14 299 1 195 42 0 0 chr4 66031561 66031585 -136296762 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 946 187 124 62 chr4 66031586 66031843 -136296504 - AluJo SINE Alu -29 283 11 1987 132 57 15 chr4 66031896 66032229 -136296118 + MER41C LTR ERV1 1 347 -207 356 100 0 50 chr4 66032229 66032309 -136296038 + (TA)n Simple_repeat Simple_repeat 1 76 0 2088 106 7 0 chr4 66032318 66032601 -136295746 + AluSg SINE Alu 1 285 -25 925 166 171 0 chr4 66032630 66032811 -136295536 + MER41C LTR ERV1 343 554 0 320 321 91 40 chr4 66033148 66033400 -136294947 + L1MC/D LINE L1 5470 5734 -436 29 0 0 0 chr4 66033441 66033470 -136294877 + AT_rich Low_complexity Low_complexity 1 29 0 513 156 0 11 chr4 66033472 66033562 -136294785 - HY4 scRNA scRNA -4 89 1 249 227 102 23 chr4 66033562 66033650 -136294697 + L1MC/D LINE L1 5786 5880 -1928 26 82 0 0 chr4 66033762 66033823 -136294524 + AT_rich Low_complexity Low_complexity 1 61 0 2005 155 0 0 chr4 66033959 66034262 -136294085 - AluSx SINE Alu -9 303 1 779 159 8 0 chr4 66035427 66035553 -136292794 + FLAM_C SINE Alu 1 127 -16 1292 209 36 22 chr4 66035806 66036083 -136292264 + AluJb SINE Alu 1 281 -31 26 88 0 0 chr4 66036089 66036157 -136292190 + AT_rich Low_complexity Low_complexity 1 68 0 742 182 98 0 chr4 66036193 66036336 -136292011 - FRAM SINE Alu 0 176 20 454 224 24 16 chr4 66036628 66036794 -136291553 - MIR SINE MIR 0 262 26 301 308 67 10 chr4 66036907 66037011 -136291336 - L2 LINE L2 0 3313 3204 502 213 7 29 chr4 66037249 66037385 -136290962 - MER104 DNA Tc2 -45 135 3 568 231 71 39 chr4 66037431 66037613 -136290734 + MIR SINE MIR 65 252 -10 876 259 113 64 chr4 66037639 66037904 -136290443 - L2 LINE L2 0 3313 3062 1968 133 3 35 chr4 66037904 66038220 -136290127 - AluSx SINE Alu -6 306 1 876 259 113 64 chr4 66038220 66038601 -136289746 - L2 LINE L2 -251 3062 2649 189 213 0 21 chr4 66038743 66038790 -136289557 + L2 LINE L2 3227 3272 0 2226 93 3 0 chr4 66039366 66039667 -136288680 + AluSx SINE Alu 1 302 -10 1794 161 0 21 chr4 66041018 66041309 -136287038 + AluJo SINE Alu 1 285 -27 1772 159 107 0 chr4 66041419 66041745 -136286602 + MER46B DNA MER2_type 1 236 0 280 306 36 18 chr4 66042267 66042378 -136285969 + L2 LINE L2 3200 3312 -1 408 245 176 6 chr4 66042534 66042693 -136285654 - L1MD3 LINE L1 -16 7979 7794 2122 158 0 49 chr4 66042693 66042910 -136285437 + MLT1B LTR MaLR 1 190 -200 1456 144 65 94 chr4 66042910 66043292 -136285055 - THE1C LTR MaLR -4 371 1 2122 158 0 49 chr4 66043292 66043484 -136284863 + MLT1B LTR MaLR 190 390 0 1419 206 63 9 chr4 66043505 66043820 -136284527 - L1MD2 LINE L1 -203 6156 5825 192 77 0 0 chr4 66044108 66044134 -136284213 + (T)n Simple_repeat Simple_repeat 1 26 0 1255 20 7 0 chr4 66044134 66044282 -136284065 - MER41A LTR ERV1 -86 468 320 266 50 25 0 chr4 66044282 66044322 -136284025 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 238 255 0 20 chr4 66044803 66044854 -136283493 + L2 LINE L2 3208 3257 -15 799 163 0 15 chr4 66045005 66045140 -136283207 - FLAM_C SINE Alu 0 133 1 2893 9 0 0 chr4 66045936 66046254 -136282093 + AluYb8 SINE Alu 1 318 0 1728 230 153 17 chr4 66046485 66046995 -136281352 + MLT1E LTR MaLR 4 583 -7 925 173 26 78 chr4 66047072 66047303 -136281044 - MER20 DNA MER1_type 0 219 1 25 31 0 0 chr4 66048469 66048501 -136279846 + AT_rich Low_complexity Low_complexity 1 32 0 237 239 0 0 chr4 66048617 66048663 -136279684 + GA-rich Low_complexity Low_complexity 3 48 0 435 297 262 3 chr4 66048925 66049215 -136279132 - L2 LINE L2 -14 3299 2935 4276 178 30 27 chr4 66049256 66049750 -136278597 - L1MB8 LINE L1 -5 6173 5682 2451 71 0 0 chr4 66049750 66050047 -136278300 - AluY SINE Alu -14 297 1 4276 178 30 27 chr4 66050047 66050868 -136277479 - L1MB8 LINE L1 -496 5682 4861 487 107 24 0 chr4 66050998 66051082 -136277265 + CT-rich Low_complexity Low_complexity 1 86 0 2242 84 9 62 chr4 66051082 66051405 -136276942 - AluSp SINE Alu -5 308 3 2817 22 0 0 chr4 66051410 66051727 -136276620 - AluYb8 SINE Alu -1 317 1 199 263 0 0 chr4 66051743 66051781 -136276566 + L2 LINE L2 3221 3258 -14 1678 156 7 49 chr4 66051800 66052108 -136276239 + AluJb SINE Alu 1 295 -17 210 316 143 48 chr4 66052293 66052502 -136275845 - L2 LINE L2 -528 2786 2558 865 214 73 5 chr4 66053281 66053501 -136274846 + MER39 LTR ERV1 473 707 0 273 57 0 0 chr4 66053503 66053538 -136274809 + (TA)n Simple_repeat Simple_repeat 1 35 0 1927 140 0 3 chr4 66053538 66053824 -136274523 - AluJb SINE Alu -24 288 4 267 325 156 19 chr4 66054249 66054403 -136273944 - L2 LINE L2 -2892 422 248 2837 10 0 0 chr4 66057507 66057815 -136270532 + AluYa5 SINE Alu 1 308 -3 187 254 18 36 chr4 66058053 66058108 -136270239 + MER5A DNA MER1_type 85 138 -51 815 198 34 17 chr4 66058216 66058393 -136269954 - MER5A DNA MER1_type 0 189 10 1057 291 57 45 chr4 66058729 66058792 -136269555 + MLT1G LTR MaLR 5 66 -524 458 281 0 0 chr4 66058792 66058906 -136269441 - MER81 DNA DNA 0 114 1 1057 291 57 45 chr4 66058906 66059358 -136268989 + MLT1G LTR MaLR 66 493 -97 295 284 95 0 chr4 66059669 66059785 -136268562 - MIR SINE MIR -6 256 130 470 310 73 35 chr4 66060083 66060315 -136268032 + MIR SINE MIR 2 242 -20 282 252 99 45 chr4 66060841 66060952 -136267395 + MER5B DNA MER1_type 3 119 -59 1411 211 14 57 chr4 66062224 66062407 -136265940 + MER58B DNA MER1_type 1 163 -2257 2148 117 0 0 chr4 66062407 66062705 -136265642 - AluSg SINE Alu -12 298 1 1411 211 14 57 chr4 66062705 66062871 -136265476 + MER58B DNA MER1_type 163 335 -6 250 285 32 49 chr4 66062876 66062999 -136265348 + L2 LINE L2 2271 2391 -923 751 200 97 6 chr4 66063165 66063330 -136265017 + FRAM SINE Alu 1 176 0 452 99 14 0 chr4 66063330 66063401 -136264946 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 634 190 0 9 chr4 66063814 66063930 -136264417 + FLAM_C SINE Alu 1 115 -28 1038 148 0 0 chr4 66063931 66064107 -136264240 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 239 135 0 0 chr4 66064107 66064144 -136264203 + (GGGA)n Simple_repeat Simple_repeat 2 38 0 1943 122 58 3 chr4 66064146 66064440 -136263907 + AluSx SINE Alu 1 310 -2 458 125 12 0 chr4 66064440 66064520 -136263827 + (GA)n Simple_repeat Simple_repeat 1 81 0 366 165 10 29 chr4 66064498 66064566 -136263781 + GA-rich Low_complexity Low_complexity 4 71 -33 * 261 0 0 0 chr4 66064566 66064595 -136263752 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 366 165 10 29 chr4 66064595 66064629 -136263718 + GA-rich Low_complexity Low_complexity 71 104 0 505 150 16 24 chr4 66064653 66064780 -136263567 + GA-rich Low_complexity Low_complexity 3 128 0 753 188 0 0 chr4 66064836 66064964 -136263383 - FLAM_C SINE Alu -5 128 1 181 231 0 0 chr4 66065233 66065272 -136263075 + L2 LINE L2 3266 3304 -9 2856 184 118 93 chr4 66065790 66066341 -136262006 - L1MC3 LINE L1 -40 7745 7080 391 179 64 0 chr4 66066341 66066419 -136261928 - MLT1F1 LTR MaLR -450 117 35 2856 184 118 93 chr4 66066419 66066804 -136261543 - L1MC3 LINE L1 -705 7080 6706 649 175 30 167 chr4 66067680 66067914 -136260433 + MER21B LTR ERV1 1 202 -661 551 111 0 40 chr4 66067931 66068030 -136260317 + AluSg/x SINE Alu 201 295 -14 342 0 0 0 chr4 66068201 66068239 -136260108 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2067 128 0 0 chr4 66068435 66068775 -136259572 + AluSx SINE Alu 1 340 0 1864 167 0 10 chr4 66069434 66069745 -136258602 - AluJb SINE Alu -4 308 1 352 293 75 27 chr4 66070753 66070900 -136257447 + MIR SINE MIR 101 254 -8 22 0 0 0 chr4 66071555 66071577 -136256770 + AT_rich Low_complexity Low_complexity 1 22 0 1465 231 62 18 chr4 66072406 66072795 -136255552 + MLT1C LTR MaLR 1 406 -61 371 27 118 0 chr4 66072932 66073042 -136255305 + (TA)n Simple_repeat Simple_repeat 1 123 0 290 264 40 63 chr4 66073212 66073386 -136254961 + L1ME LINE L1 5496 5665 -456 186 174 0 0 chr4 66073999 66074045 -136254302 + (TATG)n Simple_repeat Simple_repeat 2 47 0 218 130 0 37 chr4 66074072 66074126 -136254221 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 203 229 0 0 chr4 66074134 66074169 -136254178 + polypyrimidine Low_complexity Low_complexity 2 36 0 219 250 73 0 chr4 66074651 66074719 -136253628 - MIR SINE MIR -117 145 73 2007 188 14 8 chr4 66074795 66075116 -136253231 + MLT1A1 LTR MaLR 5 330 -35 183 42 0 0 chr4 66075116 66075140 -136253207 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2007 188 14 8 chr4 66075140 66075175 -136253172 + MLT1A1 LTR MaLR 330 363 -2 247 291 13 35 chr4 66075455 66075559 -136252788 + GA-rich Low_complexity Low_complexity 5 110 -115 2768 148 32 92 chr4 66075559 66075883 -136252464 + LTR9 LTR ERV1 1 268 -344 1908 148 10 3 chr4 66075883 66076173 -136252174 + AluSx SINE Alu 5 296 -16 2768 148 32 92 chr4 66076173 66076499 -136251848 + LTR9 LTR ERV1 268 612 0 247 291 13 35 chr4 66076499 66076541 -136251806 + GA-rich Low_complexity Low_complexity 110 225 0 861 287 115 20 chr4 66076549 66076992 -136251355 + LTR33 LTR ERVL 1 485 -36 29 0 0 0 chr4 66078726 66078755 -136249592 + AT_rich Low_complexity Low_complexity 1 29 0 2182 100 0 0 chr4 66079295 66079610 -136248737 - AluSg SINE Alu 0 315 1 275 329 153 33 chr4 66079827 66080101 -136248246 - L2 LINE L2 -457 2857 2551 232 320 10 21 chr4 66080193 66080290 -136248057 - MIR SINE MIR -50 212 117 2197 90 20 13 chr4 66080785 66081086 -136247261 + AluSx SINE Alu 1 303 -9 470 196 22 14 chr4 66081627 66081765 -136246582 + GA-rich Low_complexity Low_complexity 2 140 0 1821 196 20 51 chr4 66084045 66084454 -136243893 + MSTD LTR MaLR 1 396 0 411 338 92 34 chr4 66085218 66085613 -136242734 + L2 LINE L2 2653 3070 -202 2260 123 0 0 chr4 66086922 66087231 -136241116 - AluSc SINE Alu 0 309 1 300 299 132 23 chr4 66087255 66087429 -136240918 - MIR SINE MIR -64 198 6 989 144 56 6 chr4 66087631 66087753 -136240594 + AluSq SINE Alu 1 134 -179 210 37 0 0 chr4 66087753 66087780 -136240567 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 989 144 56 6 chr4 66087780 66087817 -136240530 + AluSq SINE Alu 134 168 -145 1940 119 3 21 chr4 66087849 66088134 -136240213 + AluSx SINE Alu 1 280 -32 333 0 0 0 chr4 66088134 66088171 -136240176 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 515 299 112 13 chr4 66088874 66089098 -136239249 - MIR SINE MIR -16 246 1 738 257 11 6 chr4 66089218 66089397 -136238950 - MIR SINE MIR -13 249 70 1072 133 6 0 chr4 66089437 66089602 -136238745 - AluSp SINE Alu 0 313 148 810 135 16 0 chr4 66089602 66089728 -136238619 - AluSg/x SINE Alu -112 200 73 1851 136 22 95 chr4 66089848 66090344 -136238003 + MSTA LTR MaLR 1 428 0 1717 188 0 7 chr4 66090630 66090928 -136237419 - AluJo SINE Alu -16 296 1 1482 187 0 52 chr4 66091295 66091605 -136236742 + AluJo SINE Alu 1 294 -18 183 100 0 0 chr4 66091622 66091652 -136236695 + (TAAAAA)n Simple_repeat Simple_repeat 5 34 0 216 0 0 0 chr4 66092363 66092387 -136235960 + (TA)n Simple_repeat Simple_repeat 2 25 0 2362 94 3 0 chr4 66092388 66092695 -136235652 - AluSx SINE Alu -4 308 1 1684 170 7 33 chr4 66092924 66093230 -136235117 - AluJb SINE Alu -13 299 2 385 164 135 19 chr4 66093270 66093374 -136234973 - MLT1J LTR MaLR -9 502 387 766 261 136 18 chr4 66093422 66093702 -136234645 - MLT1J LTR MaLR -198 313 1 1922 136 7 0 chr4 66096581 66096875 -136231472 + AluSx SINE Alu 1 296 -16 1432 179 0 69 chr4 66096977 66097295 -136231052 - AluJo SINE Alu -1 311 16 1684 190 0 19 chr4 66097465 66097776 -136230571 + AluJb SINE Alu 1 305 -7 356 218 64 137 chr4 66099532 66099751 -136228596 + MER34 LTR ERV1 434 537 -5 309 250 125 0 chr4 66099828 66099916 -136228431 + MIR SINE MIR 56 154 -108 253 125 0 0 chr4 66100847 66100887 -136227460 - HUERS-P1 LTR ERV1 -4709 1554 1515 * 7835 122 15 28 chr4 66100877 66102416 -136225931 + HUERS-P1 LTR ERV1 1489 6263 0 4537 32 23 12 chr4 66102429 66102995 -136225352 + L1PA4 LINE L1 5584 6155 0 4751 95 33 10 chr4 66103001 66103676 -136224671 + LTR8 LTR ERV1 2 691 0 669 137 216 0 chr4 66104018 66104157 -136224190 + FAM SINE Alu 1 49 0 853 161 207 19 chr4 66104344 66104671 -136223676 + LTR48 LTR ERV1 1 418 -369 653 217 104 36 chr4 66104674 66104923 -136223424 + LTR48 LTR ERV1 522 787 0 288 0 0 0 chr4 66105516 66105548 -136222799 + (T)n Simple_repeat Simple_repeat 1 32 0 2024 110 11 0 chr4 66105769 66106080 -136222267 + AluSx SINE Alu 1 314 0 182 36 0 36 chr4 66106560 66106588 -136221759 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 570 204 9 0 chr4 66106603 66106711 -136221636 - FRAM SINE Alu -39 137 29 1209 155 24 10 chr4 66106736 66106942 -136221405 + AluJb SINE Alu 87 295 -17 784 176 0 8 chr4 66106942 66107073 -136221274 - AluJo/FLAM SINE Alu -172 130 1 523 92 82 31 chr4 66107263 66107361 -136220986 - L1MB1 LINE L1 -8 6160 6058 33 0 0 0 chr4 66108548 66108581 -136219766 + AT_rich Low_complexity Low_complexity 1 33 0 1324 60 0 0 chr4 66110030 66110196 -136218151 - L1PA5 LINE L1 -2 6152 5987 394 267 95 41 chr4 66110232 66110627 -136217720 + L2 LINE L2 2653 3313 0 282 302 265 30 chr4 66110647 66110915 -136217432 + L2 LINE L2 2921 3251 -62 21 0 0 0 chr4 66111412 66111433 -136216914 + AT_rich Low_complexity Low_complexity 1 21 0 2162 103 0 3 chr4 66112886 66113178 -136215169 - AluY SINE Alu -20 291 1 630 255 29 39 chr4 66113269 66113473 -136214874 + MIR SINE MIR 45 246 -16 1216 97 0 0 chr4 66115426 66115628 -136212719 + AluSp SINE Alu 132 333 0 23 0 0 0 chr4 66117862 66117885 -136210462 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 66118059 66118081 -136210266 + AT_rich Low_complexity Low_complexity 1 22 0 892 156 0 0 chr4 66118303 66118438 -136209909 + MSTA LTR MaLR 1 135 -293 3458 107 53 8 chr4 66118471 66118977 -136209370 + THE1B-int LTR MaLR 1050 1578 -2 2213 121 39 39 chr4 66118979 66119343 -136209004 + THE1B LTR MaLR 1 364 0 3430 196 156 39 chr4 66119343 66120257 -136208090 - MER52A LTR ERV1 -612 1143 12 414 269 85 15 chr4 66120401 66120531 -136207816 + MLT1H LTR MaLR 39 177 -372 289 156 103 4 chr4 66120656 66120738 -136207609 + MLT1F LTR MaLR 431 519 -30 1381 186 26 73 chr4 66120968 66121349 -136206998 - MLT1A1 LTR MaLR -2 363 1 231 313 147 67 chr4 66121355 66121771 -136206576 + L2 LINE L2 2431 2879 -435 184 369 81 13 chr4 66121937 66122086 -136206261 - L2 LINE L2 -25 3288 3130 22 106 0 0 chr4 66122579 66122664 -136205683 + AT_rich Low_complexity Low_complexity 1 85 0 739 252 53 71 chr4 66123327 66123542 -136204805 - MER5C DNA MER1_type 0 324 114 2061 114 4 4 chr4 66123542 66123845 -136204502 - AluSg SINE Alu 0 303 1 739 252 53 71 chr4 66123845 66123950 -136204397 - MER5C DNA MER1_type -210 114 9 2582 212 44 24 chr4 66125309 66125942 -136202405 - L1MB8 LINE L1 -15 6163 5518 252 346 46 8 chr4 66126499 66126629 -136201718 - MIR3 SINE MIR -3 205 71 810 304 0 54 chr4 66126865 66127141 -136201206 + MIR SINE MIR 2 262 0 314 314 96 55 chr4 66127183 66127403 -136200944 - L2 LINE L2 -43 3270 3042 225 0 0 0 chr4 66128199 66128224 -136200123 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 262 331 109 44 chr4 66128660 66128998 -136199349 - L2 LINE L2 -19 3253 2894 569 228 111 21 chr4 66129074 66129263 -136199084 - L1MC5 LINE L1 -97 7864 7659 21 57 0 0 chr4 66129600 66129635 -136198712 + AT_rich Low_complexity Low_complexity 1 35 0 195 320 80 13 chr4 66129738 66129813 -136198534 - L2 LINE L2 0 3272 3193 266 269 48 7 chr4 66130460 66130605 -136197742 + (TA)n Simple_repeat Simple_repeat 1 151 0 2098 74 48 0 chr4 66131715 66132035 -136196312 + AluY SINE Alu 1 333 0 423 330 53 30 chr4 66134443 66134707 -136193640 + MLT1K LTR MaLR 317 586 -2 281 177 25 38 chr4 66136660 66136739 -136191608 + (TA)n Simple_repeat Simple_repeat 2 79 0 423 297 118 24 chr4 66136922 66137134 -136191213 + MIR SINE MIR 22 253 -9 263 299 103 8 chr4 66137290 66137407 -136190940 + MIR SINE MIR 45 172 -90 508 200 0 0 chr4 66137588 66137668 -136190679 + MER58B DNA MER1_type 262 341 0 186 343 0 0 chr4 66137668 66137735 -136190612 + MIR SINE MIR 164 230 -32 363 44 0 0 chr4 66137846 66137891 -136190456 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 399 44 15 29 chr4 66137909 66137977 -136190370 + (TA)n Simple_repeat Simple_repeat 1 67 0 1839 153 11 3 chr4 66138041 66138371 -136189976 + AluSx SINE Alu 1 332 0 225 316 60 15 chr4 66139373 66139506 -136188841 - MIR SINE MIR -11 251 113 180 281 90 22 chr4 66140416 66140505 -136187842 - MER5A DNA MER1_type 0 189 95 2052 126 0 0 chr4 66140826 66141111 -136187236 + AluSg SINE Alu 11 295 -15 1311 180 65 12 chr4 66141553 66141798 -136186549 + AluJo SINE Alu 12 269 -43 2260 116 8 52 chr4 66143353 66143513 -136184834 + THE1B LTR MaLR 1 167 -197 2296 86 10 0 chr4 66143513 66143814 -136184533 - AluY SINE Alu -7 304 1 2260 116 8 52 chr4 66143814 66144034 -136184313 + THE1B LTR MaLR 167 364 0 11148 89 32 8 chr4 66144034 66144169 -136184178 + THE1B-int LTR MaLR 1 131 -1449 2105 107 4 0 chr4 66144169 66144492 -136183855 + AluSg SINE Alu 1 324 0 11148 89 32 8 chr4 66144492 66145898 -136182449 + THE1B-int LTR MaLR 131 1580 0 2584 94 5 24 chr4 66145898 66146269 -136182078 + THE1B LTR MaLR 1 364 0 1315 130 35 9 chr4 66146379 66146610 -136181737 + Tigger7 DNA MER2_type 2254 2490 -1 189 0 0 0 chr4 66147658 66147679 -136180668 + (CA)n Simple_repeat Simple_repeat 2 22 0 4324 118 19 4 chr4 66148199 66148865 -136179482 - L1PBa LINE L1 -4939 1913 1163 724 72 0 0 chr4 66148859 66148956 -136179391 + L1P5 LINE L1 5695 5791 -360 * 375 198 95 40 chr4 66149110 66149236 -136179111 + L1ME1 LINE L1 6024 6156 -10 22 56 0 0 chr4 66150105 66150141 -136178206 + AT_rich Low_complexity Low_complexity 1 36 0 592 167 0 0 chr4 66150956 66151052 -136177295 - AluSg/x SINE Alu -43 267 172 272 250 13 13 chr4 66151831 66151907 -136176440 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 739 296 39 0 chr4 66151925 66152128 -136176219 - MIR SINE MIR -23 239 29 541 291 33 74 chr4 66152132 66152431 -136175916 - L3 LINE CR1 -366 1211 925 254 290 38 53 chr4 66152430 66152561 -136175786 + L2 LINE L2 3184 3312 -1 * 843 289 25 18 chr4 66152636 66152916 -136175431 - L3 LINE CR1 -737 840 559 293 208 39 0 chr4 66152971 66153048 -136175299 - MER116 DNA Mariner 0 80 1 196 312 65 13 chr4 66153052 66153129 -136175218 - L3 LINE CR1 -1071 506 426 23 0 0 0 chr4 66153366 66153389 -136174958 + AT_rich Low_complexity Low_complexity 1 23 0 2299 108 3 13 chr4 66155596 66155912 -136172435 - AluSp SINE Alu 0 313 1 1967 110 10 14 chr4 66157296 66157586 -136170761 - AluSx SINE Alu -3 309 21 404 175 58 47 chr4 66157598 66157696 -136170651 - MER5A DNA MER1_type -34 146 57 2083 135 0 0 chr4 66157885 66158181 -136170166 - AluSx SINE Alu -16 296 1 2032 163 6 8 chr4 66158630 66158991 -136169356 - MER46B DNA MER2_type -1 235 1 24 0 0 0 chr4 66159179 66159203 -136169144 + AT_rich Low_complexity Low_complexity 1 24 0 2128 88 7 7 chr4 66159606 66159903 -136168444 - AluY SINE Alu -14 297 1 2343 57 0 0 chr4 66160757 66161073 -136167274 + AluY SINE Alu 1 316 0 270 0 0 0 chr4 66161524 66161554 -136166793 + (CA)n Simple_repeat Simple_repeat 1 30 0 797 172 159 66 chr4 66161815 66162042 -136166305 + MER34B LTR ERV1 11 258 -307 1447 155 0 19 chr4 66162042 66162304 -136166043 - Tigger7 DNA MER2_type 0 2491 2235 1026 195 24 0 chr4 66162304 66162509 -136165838 + MER2 DNA MER2_type 1 210 -135 30 0 0 0 chr4 66162522 66162552 -136165795 + AT_rich Low_complexity Low_complexity 1 30 0 2346 99 6 6 chr4 66162569 66162882 -136165465 - AluSq SINE Alu 0 313 1 526 146 0 0 chr4 66162914 66162996 -136165351 - Tigger7 DNA MER2_type -257 82 1 828 155 64 18 chr4 66163023 66163242 -136165105 + MER34B LTR ERV1 271 499 -66 25 31 0 0 chr4 66163316 66163348 -136164999 + AT_rich Low_complexity Low_complexity 1 32 0 225 309 118 9 chr4 66164088 66164198 -136164149 + MER39 LTR ERV1 5 126 -581 735 203 79 40 chr4 66164283 66164574 -136163773 + MER39 LTR ERV1 406 585 0 346 296 20 0 chr4 66164886 66164984 -136163363 + MER31-int LTR ERV1 553 652 -6149 402 197 54 68 chr4 66165080 66165227 -136163120 + MER31-int LTR ERV1 1387 1531 -4800 684 186 0 9 chr4 66165249 66165362 -136162985 + FLAM_C SINE Alu 13 124 -19 226 240 0 0 chr4 66165426 66165476 -136162871 + MER67B LTR ERV1 150 199 -462 1821 116 31 12 chr4 66165605 66166058 -136162289 + MER61D LTR ERV1 1 501 0 803 199 199 8 chr4 66166657 66166918 -136161429 + MER31-int LTR ERV1 835 1145 -3791 3072 66 4 77 chr4 66166931 66167414 -136160933 + LTR7 LTR ERV1 1 448 -2 18907 94 31 8 chr4 66167416 66170343 -136158004 + HERVH LTR ERV1 1 2995 -4718 939 113 7 0 chr4 66170322 66170472 -136157875 + HERVH LTR ERV1 3140 3290 -4423 * 2993 118 2 6 chr4 66170476 66170967 -136157380 + HERVH LTR ERV1 3505 3993 -3720 3842 135 1 52 chr4 66170969 66171666 -136156681 + HERVH LTR ERV1 4488 5149 -2564 1330 125 19 0 chr4 66171667 66171883 -136156464 + HERVH LTR ERV1 5600 5819 -1894 2350 67 59 13 chr4 66171883 66172256 -136156091 + HERVH LTR ERV1 7324 7713 0 2747 60 2 75 chr4 66172256 66172710 -136155637 + LTR7 LTR ERV1 1 421 -29 24 0 0 0 chr4 66222797 66222821 -136105526 + AT_rich Low_complexity Low_complexity 1 24 0 224 224 0 20 chr4 66224165 66224214 -136104133 + CT-rich Low_complexity Low_complexity 1 48 0 2206 94 37 7 chr4 66224783 66225081 -136103266 - AluSg SINE Alu -3 307 1 189 0 0 0 chr4 66225081 66225102 -136103245 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr4 66225791 66225812 -136102535 + AT_rich Low_complexity Low_complexity 1 21 0 4242 148 24 8 chr4 66226233 66226956 -136101391 + MER50 LTR ERV1 1 734 0 1176 176 0 79 chr4 66227309 66227587 -136100760 - Tigger1 DNA MER2_type -2161 257 2 2017 94 54 0 chr4 66227740 66227857 -136100490 + AluSc SINE Alu 1 110 -199 1027 76 29 0 chr4 66227857 66228029 -136100318 + (TA)n Simple_repeat Simple_repeat 1 177 0 2017 94 54 0 chr4 66228029 66228143 -136100204 + AluSc SINE Alu 110 252 -57 195 42 0 0 chr4 66228143 66228167 -136100180 + (CACTG)n Simple_repeat Simple_repeat 1 24 0 2017 94 54 0 chr4 66228167 66228211 -136100136 + AluSc SINE Alu 252 292 -17 373 191 0 0 chr4 66228313 66228376 -136099971 - MER5A DNA MER1_type -1 188 126 689 289 54 0 chr4 66229903 66230069 -136098278 - MER5A DNA MER1_type -14 175 1 372 324 61 65 chr4 66230069 66230268 -136098079 + MIR SINE MIR 9 208 -54 363 23 0 0 chr4 66230268 66230312 -136098035 + (CA)n Simple_repeat Simple_repeat 2 45 0 372 324 61 65 chr4 66230312 66230357 -136097990 + MIR SINE MIR 208 252 -10 463 336 73 13 chr4 66231030 66231262 -136097085 - MIR SINE MIR -14 248 3 279 0 0 0 chr4 66231353 66231384 -136096963 + (CA)n Simple_repeat Simple_repeat 2 32 0 273 98 0 0 chr4 66231797 66231838 -136096509 + (TC)n Simple_repeat Simple_repeat 2 42 0 207 100 0 0 chr4 66232413 66232443 -136095904 + (TG)n Simple_repeat Simple_repeat 2 31 0 443 342 51 31 chr4 66232484 66232741 -136095606 + MIR SINE MIR 1 262 0 196 359 116 38 chr4 66232756 66233177 -136095170 + L2 LINE L2 2304 2757 -557 321 319 100 42 chr4 66233193 66233251 -136095096 + HAL1 LINE L1 4 57 -2450 1646 245 42 52 chr4 66233251 66233848 -136094499 - MLT1E LTR MaLR 0 593 3 321 319 100 42 chr4 66233848 66234049 -136094298 + HAL1 LINE L1 57 278 -2229 * 660 276 120 34 chr4 66234033 66234599 -136093748 + HAL1 LINE L1 1681 2295 -212 7209 241 85 41 chr4 66235111 66237407 -136090940 - L1M4c LINE L1 -4516 2137 2 267 294 62 59 chr4 66237378 66237650 -136090697 - L1M3d LINE L1 -5616 1037 765 * 41548 62 5 1 chr4 66237700 66243823 -136084524 - L1PA4 LINE L1 -4 6151 1 18725 160 28 21 chr4 66244010 66247985 -136080362 - L1MA3 LINE L1 0 7724 3776 214 28 28 28 chr4 66247985 66248021 -136080326 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 18725 160 28 21 chr4 66248021 66249961 -136078386 - L1MA3 LINE L1 -3948 3776 1739 411 38 0 0 chr4 66249961 66250014 -136078333 + (TC)n Simple_repeat Simple_repeat 2 54 0 18725 160 28 21 chr4 66250014 66251591 -136076756 - L1MA3 LINE L1 -5985 1739 174 23 0 0 0 chr4 66252453 66252476 -136075871 + AT_rich Low_complexity Low_complexity 1 23 0 552 327 86 7 chr4 66252836 66253105 -136075242 - MLT1L LTR MaLR -12 603 314 195 162 0 0 chr4 66253195 66253232 -136075115 + (CA)n Simple_repeat Simple_repeat 2 38 0 1246 226 49 86 chr4 66253512 66253941 -136074406 - L1MD2 LINE L1 -10 6349 5937 451 340 0 0 chr4 66254131 66254275 -136074072 - MER110 LTR ERV1 0 491 348 719 291 66 14 chr4 66254714 66254939 -136073408 - MER110-int LTR ERV1 -123 4524 4321 1752 147 75 33 chr4 66254945 66255305 -136073042 + THE1C LTR MaLR 1 375 0 9411 134 19 37 chr4 66255307 66256913 -136071434 + THE1C-int LTR MaLR 3 1580 0 1679 150 63 41 chr4 66256913 66257280 -136071067 + THE1C LTR MaLR 1 375 0 215 133 0 22 chr4 66257281 66257311 -136071036 + (TA)n Simple_repeat Simple_repeat 2 32 -13 1818 180 20 33 chr4 66257311 66257706 -136070641 + MLT1B LTR MaLR 1 390 0 215 133 0 22 chr4 66257706 66257720 -136070627 + (TA)n Simple_repeat Simple_repeat 32 45 0 1513 189 73 42 chr4 66257785 66258139 -136070208 - MSTD LTR MaLR -31 365 1 26 50 0 0 chr4 66259126 66259166 -136069181 + AT_rich Low_complexity Low_complexity 1 40 0 345 301 66 24 chr4 66259213 66259379 -136068968 - MLT1L LTR MaLR -54 561 389 318 26 0 0 chr4 66259401 66259440 -136068907 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 35 0 0 chr4 66260157 66260186 -136068161 + AT_rich Low_complexity Low_complexity 1 29 0 192 77 0 0 chr4 66260389 66260415 -136067932 + (T)n Simple_repeat Simple_repeat 1 26 0 2219 155 48 26 chr4 66261064 66261483 -136066864 - MSTA LTR MaLR 0 428 1 2138 123 3 19 chr4 66261625 66261941 -136066406 - AluSx SINE Alu -1 311 1 610 205 12 50 chr4 66261941 66262102 -136066245 - L1MD2 LINE L1 -11 6348 6194 1366 199 71 35 chr4 66262171 66262570 -136065777 - L1MD2 LINE L1 -475 5884 5432 289 160 0 0 chr4 66262577 66262627 -136065720 + L1ME LINE L1 5506 5555 -687 235 154 0 0 chr4 66262732 66262771 -136065576 + L1ME LINE L1 5517 5555 -609 291 169 104 13 chr4 66262773 66262850 -136065497 + L1MC/D LINE L1 5415 5498 -861 1848 191 36 63 chr4 66262852 66263468 -136064879 - L1MD2 LINE L1 -743 5403 4820 22 35 0 0 chr4 66263585 66263614 -136064733 + AT_rich Low_complexity Low_complexity 1 29 0 193 298 279 0 chr4 66264806 66264910 -136063437 - MIR SINE MIR -121 141 9 22 0 0 0 chr4 66265083 66265105 -136063242 + AT_rich Low_complexity Low_complexity 1 22 0 278 232 0 12 chr4 66265285 66265367 -136062980 + (TA)n Simple_repeat Simple_repeat 2 82 0 269 272 87 26 chr4 66266186 66266372 -136061975 - MIR SINE MIR 0 262 20 2428 58 0 19 chr4 66266981 66267292 -136061055 - AluY SINE Alu -6 305 1 24 0 0 0 chr4 66267711 66267735 -136060612 + AT_rich Low_complexity Low_complexity 1 24 0 1198 251 39 16 chr4 66267878 66268261 -136060086 + L1MC/D LINE L1 5388 5779 -2029 255 184 40 26 chr4 66268294 66268370 -136059977 + L1MC5 LINE L1 7407 7483 -478 1452 176 60 11 chr4 66268455 66268722 -136059625 - AluJo SINE Alu -32 280 1 614 227 51 11 chr4 66268742 66268918 -136059429 + L1MC5 LINE L1 7708 7890 -71 676 274 106 4 chr4 66269425 66269680 -136058667 - L1ME3 LINE L1 -26 6136 5856 198 156 0 0 chr4 66269690 66269735 -136058612 + T-rich Low_complexity Low_complexity 1 45 0 995 233 0 0 chr4 66269770 66269963 -136058384 - AluJo SINE Alu -119 193 1 650 270 112 27 chr4 66269964 66270260 -136058087 - L1ME3 LINE L1 -319 5851 5531 231 356 30 10 chr4 66270276 66270377 -136057970 + L2 LINE L2 2588 2690 -624 523 328 122 5 chr4 66270382 66270672 -136057675 - L2 LINE L2 -264 3049 2721 25 31 0 0 chr4 66270941 66270973 -136057374 + AT_rich Low_complexity Low_complexity 1 32 0 277 326 54 31 chr4 66271156 66271285 -136057062 + MER5B DNA MER1_type 7 138 -40 1694 190 139 32 chr4 66271321 66271752 -136056595 - MLT1D LTR MaLR 0 505 29 216 226 0 0 chr4 66271991 66272053 -136056294 + A-rich Low_complexity Low_complexity 1 62 0 2346 149 103 0 chr4 66272348 66272736 -136055611 - MSTC LTR MaLR 0 428 1 21 71 0 0 chr4 66272838 66272880 -136055467 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr4 66273148 66273174 -136055173 + AT_rich Low_complexity Low_complexity 1 26 0 2691 130 21 12 chr4 66274701 66275131 -136053216 - MER57B LTR ERV1 0 434 1 21 57 0 0 chr4 66276679 66276714 -136051633 + AT_rich Low_complexity Low_complexity 1 35 0 631 297 68 16 chr4 66277866 66278189 -136050158 + HsTC2 DNA Tc2 6 345 -1553 483 291 74 101 chr4 66278202 66278523 -136049824 - L2 LINE L2 -497 2817 2508 2117 136 0 7 chr4 66278523 66278824 -136049523 + AluSx SINE Alu 1 299 -13 483 291 74 101 chr4 66278824 66278907 -136049440 - L2 LINE L2 -806 2508 2424 2009 153 3 0 chr4 66278946 66279254 -136049093 + AluSx SINE Alu 1 309 -3 406 206 52 10 chr4 66279852 66279949 -136048398 - LTR41 LTR ERVL -672 101 1 2523 177 58 54 chr4 66280075 66280708 -136047639 - MER92B LTR ERV1 0 636 1 3976 128 19 12 chr4 66280847 66281496 -136046851 - MER39B LTR ERV1 0 653 1 1066 211 26 38 chr4 66281581 66281624 -136046723 - MLT2B3 LTR ERVL 0 554 512 1143 70 0 0 chr4 66281624 66281795 -136046552 + (TA)n Simple_repeat Simple_repeat 2 172 0 1066 211 26 38 chr4 66281795 66282106 -136046241 - MLT2B3 LTR ERVL -42 512 205 2281 103 21 0 chr4 66282106 66282436 -136045911 - THE1C-int LTR MaLR -1243 337 1 2527 115 16 11 chr4 66282436 66282809 -136045538 - THE1C LTR MaLR 0 375 1 210 234 0 0 chr4 66283230 66283277 -136045070 + (ATG)n Simple_repeat Simple_repeat 1 47 0 1229 226 107 52 chr4 66283891 66284330 -136044017 + MER31B LTR ERV1 1 463 -3 1466 94 0 33 chr4 66286567 66286780 -136041567 + AluY SINE Alu 100 305 -6 589 205 17 0 chr4 66287097 66287214 -136041133 + BC200 scRNA scRNA 1 119 -81 270 0 0 0 chr4 66287214 66287244 -136041103 + (CA)n Simple_repeat Simple_repeat 1 30 0 25 31 0 0 chr4 66287430 66287462 -136040885 + AT_rich Low_complexity Low_complexity 1 32 0 291 281 61 70 chr4 66287775 66287889 -136040458 + L2 LINE L2 3197 3309 -4 1283 234 157 64 chr4 66287925 66288460 -136039887 - MLT1E LTR MaLR -8 585 1 299 316 63 0 chr4 66288524 66288619 -136039728 + MIR SINE MIR 78 178 -84 247 224 0 15 chr4 66289253 66289320 -136039027 + (TTA)n Simple_repeat Simple_repeat 2 67 0 220 145 16 48 chr4 66289760 66289822 -136038525 + CT-rich Low_complexity Low_complexity 2 61 0 22 56 0 0 chr4 66290186 66290222 -136038125 + AT_rich Low_complexity Low_complexity 1 36 0 341 313 55 43 chr4 66290310 66290473 -136037874 - MIR3 SINE MIR -10 198 34 1920 143 0 11 chr4 66291889 66292169 -136036178 - AluSx SINE Alu -30 282 6 26 0 0 0 chr4 66292364 66292390 -136035957 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr4 66293339 66293368 -136034979 + AT_rich Low_complexity Low_complexity 1 29 0 2030 179 10 23 chr4 66294630 66294806 -136033541 + MLT1B LTR MaLR 3 180 -210 1878 145 10 7 chr4 66294806 66295109 -136033238 + AluSx SINE Alu 1 304 -8 2030 179 10 23 chr4 66295109 66295318 -136033029 + MLT1B LTR MaLR 180 383 -7 253 309 13 66 chr4 66297219 66297371 -136030976 + MLT1J LTR MaLR 319 462 -49 874 120 0 0 chr4 66297486 66297611 -136030736 - AluSg/x SINE Alu -7 305 181 1641 180 7 24 chr4 66299513 66299807 -136028540 + AluJo SINE Alu 6 294 -18 585 230 56 42 chr4 66300511 66300777 -136027570 - LTR40b LTR ERVL 0 462 163 183 204 0 0 chr4 66301497 66301541 -136026806 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 772 185 0 0 chr4 66301684 66301830 -136026517 + L1MA5A LINE L1 6148 6293 -4 2042 143 0 0 chr4 66301860 66302161 -136026186 + AluSx SINE Alu 3 303 -9 24 91 0 0 chr4 66302263 66302329 -136026018 + AT_rich Low_complexity Low_complexity 1 66 0 187 291 18 0 chr4 66303495 66303550 -136024797 + L2 LINE L2 2998 3053 -219 527 333 79 9 chr4 66303706 66304021 -136024326 - L2 LINE L2 -36 3277 2941 210 154 0 0 chr4 66305635 66305674 -136022673 + T-rich Low_complexity Low_complexity 1 39 0 252 0 0 0 chr4 66306542 66306570 -136021777 + (TA)n Simple_repeat Simple_repeat 2 29 0 2042 90 3 27 chr4 66306570 66306871 -136021476 - AluY SINE Alu -17 294 1 21 0 0 0 chr4 66307363 66307384 -136020963 + AT_rich Low_complexity Low_complexity 1 21 0 192 125 0 0 chr4 66307664 66307696 -136020651 + (TG)n Simple_repeat Simple_repeat 1 32 0 926 244 57 94 chr4 66308783 66308900 -136019447 - MLT1F1 LTR MaLR -54 513 393 1347 192 5 131 chr4 66308900 66309328 -136019019 + MLT1A2 LTR MaLR 1 374 0 926 244 57 94 chr4 66309328 66309738 -136018609 - MLT1F1 LTR MaLR -174 393 2 1165 338 37 21 chr4 66310370 66310882 -136017465 - L2 LINE L2 -337 2977 2458 25 0 0 0 chr4 66311100 66311125 -136017222 + AT_rich Low_complexity Low_complexity 1 25 0 4039 68 8 0 chr4 66311284 66311815 -136016532 - L1PA7 LINE L1 -4 6150 5616 236 128 51 0 chr4 66311928 66311967 -136016380 + L1P LINE L1 3978 4018 -2128 * 9718 96 10 5 chr4 66311943 66313604 -136014743 - L1PA7 LINE L1 -515 5639 3978 188 308 0 0 chr4 66314446 66314485 -136013862 - MIR SINE MIR -110 98 60 23 33 0 0 chr4 66315219 66315249 -136013098 + AT_rich Low_complexity Low_complexity 1 30 0 186 43 0 0 chr4 66315284 66315307 -136013040 + (A)n Simple_repeat Simple_repeat 1 23 0 243 269 101 108 chr4 66315424 66315692 -136012655 - L2 LINE L2 0 3313 3048 458 286 79 11 chr4 66315696 66315874 -136012473 - LTR16A1 LTR ERVL -13 444 255 570 290 81 15 chr4 66315936 66316247 -136012100 - HERV16 LTR ERVL -2755 2241 1849 22 99 0 0 chr4 66316526 66316597 -136011750 + AT_rich Low_complexity Low_complexity 1 71 0 21 0 0 0 chr4 66316951 66316972 -136011375 + AT_rich Low_complexity Low_complexity 1 21 0 256 224 13 40 chr4 66317540 66317616 -136010731 + GA-rich Low_complexity Low_complexity 1 74 0 27 49 0 0 chr4 66318523 66318564 -136009783 + AT_rich Low_complexity Low_complexity 1 41 0 466 313 97 41 chr4 66318939 66319442 -136008905 - L2 LINE L2 0 3313 2692 217 380 33 8 chr4 66319468 66319589 -136008758 + L2 LINE L2 3147 3270 -2 268 354 61 10 chr4 66320847 66320946 -136007401 - L2 LINE L2 -22 3291 3188 27 29 0 0 chr4 66321012 66321046 -136007301 + AT_rich Low_complexity Low_complexity 1 34 0 289 390 96 16 chr4 66321056 66321305 -136007042 - L2 LINE L2 -191 3081 2813 1807 148 60 65 chr4 66321792 66322178 -136006169 + MLT1B LTR MaLR 1 384 -6 1265 183 129 4 chr4 66322296 66322559 -136005788 + AluJb SINE Alu 1 296 -16 197 0 0 67 chr4 66324419 66324449 -136003898 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 747 163 8 0 chr4 66325393 66325516 -136002831 + FAM SINE Alu 10 133 -52 24 32 0 0 chr4 66330568 66330599 -135997748 + AT_rich Low_complexity Low_complexity 1 31 0 216 313 22 52 chr4 66331407 66331541 -135996806 + MIR SINE MIR 22 151 -111 24 32 0 0 chr4 66332150 66332181 -135996166 + AT_rich Low_complexity Low_complexity 1 31 0 1111 191 8 51 chr4 66332331 66332567 -135995780 + LTR8 LTR ERV1 1 226 -465 280 193 0 0 chr4 66333778 66333835 -135994512 - MLT1F LTR MaLR -457 85 29 221 125 0 21 chr4 66334409 66334457 -135993890 + (TC)n Simple_repeat Simple_repeat 2 48 0 327 25 0 0 chr4 66334457 66334497 -135993850 + (CA)n Simple_repeat Simple_repeat 1 40 0 234 209 0 0 chr4 66334817 66334860 -135993487 + L2 LINE L2 3217 3259 -13 2553 243 58 69 chr4 66335358 66336337 -135992010 + L1MC5 LINE L1 6441 7396 -565 2136 128 0 0 chr4 66336337 66336642 -135991705 + AluSx SINE Alu 5 309 -3 2553 243 58 69 chr4 66336642 66337169 -135991178 + L1MC5 LINE L1 7396 7927 -34 21 36 0 0 chr4 66337179 66337207 -135991140 + AT_rich Low_complexity Low_complexity 1 28 0 42 14 0 56 chr4 66338128 66338156 -135990191 + AT_rich Low_complexity Low_complexity 1 29 -39 1824 148 0 17 chr4 66338156 66338446 -135989901 + AluSx SINE Alu 3 287 -25 42 14 0 56 chr4 66338446 66338489 -135989858 + AT_rich Low_complexity Low_complexity 29 68 0 326 65 21 65 chr4 66338753 66338846 -135989501 + (TTCTC)n Simple_repeat Simple_repeat 4 92 0 243 296 74 19 chr4 66338846 66339008 -135989339 - L1M4 LINE L1 -1325 4821 4651 385 313 128 30 chr4 66339204 66339622 -135988725 - L1MC/D LINE L1 -504 5658 5296 23 33 0 0 chr4 66339927 66339957 -135988390 + AT_rich Low_complexity Low_complexity 1 30 0 28 71 0 0 chr4 66340016 66340072 -135988275 + AT_rich Low_complexity Low_complexity 1 56 0 25 0 0 0 chr4 66340123 66340148 -135988199 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr4 66340278 66340307 -135988040 + AT_rich Low_complexity Low_complexity 1 29 0 395 300 84 80 chr4 66340419 66340993 -135987354 + L1MC4a LINE L1 4398 4973 -1173 351 258 80 37 chr4 66341076 66341375 -135986972 + L1MC4a LINE L1 5087 5398 -748 23 33 0 0 chr4 66341421 66341451 -135986896 + AT_rich Low_complexity Low_complexity 1 30 0 272 229 124 48 chr4 66341525 66341774 -135986573 + L1MC4a LINE L1 5630 5897 -1911 29 28 0 0 chr4 66341778 66341814 -135986533 + AT_rich Low_complexity Low_complexity 1 36 0 31 0 0 0 chr4 66342198 66342229 -135986118 + AT_rich Low_complexity Low_complexity 1 31 0 24 53 0 0 chr4 66344143 66344181 -135984166 + AT_rich Low_complexity Low_complexity 1 38 0 314 202 60 36 chr4 66344557 66344641 -135983706 + L2 LINE L2 3184 3269 -44 1687 245 99 37 chr4 66344793 66345492 -135982855 + HsTC2a DNA MER2_type 3 744 0 550 181 4 7 chr4 66346262 66346500 -135981847 + AluJo SINE Alu 1 300 -12 334 82 0 33 chr4 66346523 66346584 -135981763 + (GAA)n Simple_repeat Simple_repeat 1 59 0 808 112 0 0 chr4 66347238 66347354 -135980993 - AluSg/x SINE Alu -4 305 190 1858 97 0 8 chr4 66347891 66348148 -135980199 - AluSq SINE Alu -58 255 1 2241 119 3 0 chr4 66350228 66350538 -135977809 + AluSx SINE Alu 1 311 -1 7918 138 14 18 chr4 66350547 66351858 -135976489 + Tigger1 DNA MER2_type 280 1585 -833 3612 172 13 26 chr4 66351859 66352561 -135975786 + Tigger1 DNA MER2_type 1726 2418 0 209 310 42 0 chr4 66352563 66352634 -135975713 + MIR SINE MIR 119 192 -70 283 308 44 22 chr4 66352661 66352752 -135975595 - L2 LINE L2 -20 3293 3201 264 327 12 97 chr4 66353183 66353348 -135974999 - L2 LINE L2 -661 2653 2503 504 191 0 0 chr4 66353883 66353977 -135974370 - AluJo SINE Alu -9 303 210 890 189 30 0 chr4 66353977 66354141 -135974206 - AluJo SINE Alu -143 169 1 1917 129 0 0 chr4 66354863 66355119 -135973228 + AluSq SINE Alu 2 257 -56 2029 154 0 0 chr4 66355235 66355534 -135972813 - AluSx SINE Alu -12 300 2 2803 142 107 2 chr4 66355652 66356139 -135972208 + L1PBa LINE L1 156 693 -6170 * 12298 99 55 1 chr4 66356114 66357967 -135970380 + L1PBa LINE L1 1019 2971 -3892 6579 212 25 11 chr4 66358075 66359729 -135968618 + L1 LINE L1 2950 4626 -2236 1180 211 45 13 chr4 66359780 66360088 -135968259 + L1 LINE L1 5694 6011 -851 5906 114 17 16 chr4 66360088 66361076 -135967271 + L1PB1 LINE L1 5164 6146 -5 2138 173 65 0 chr4 66361263 66361663 -135966684 + MSTC LTR MaLR 3 428 0 8600 58 9 0 chr4 66362379 66363440 -135964907 - MER11C LTR ERVK 0 1071 1 413 202 25 34 chr4 66364179 66364298 -135964049 - MLT1K LTR MaLR 0 588 471 300 327 94 40 chr4 66364363 66364565 -135963782 - MLT1K LTR MaLR -223 365 153 4195 156 74 34 chr4 66364717 66364939 -135963408 + L1PB4 LINE L1 5105 5317 -839 2380 94 3 0 chr4 66364939 66365248 -135963099 + AluSx SINE Alu 1 310 -2 4195 156 74 34 chr4 66365248 66365601 -135962746 + L1PB4 LINE L1 5317 5654 -502 1755 197 0 0 chr4 66365601 66365906 -135962441 + AluJo SINE Alu 1 305 -7 4195 156 74 34 chr4 66365906 66366319 -135962028 + L1PB4 LINE L1 5654 6143 -13 1809 269 101 39 chr4 66366571 66368944 -135959403 - L1MEc LINE L1 -2995 3220 692 1412 257 110 33 chr4 66369291 66369862 -135958485 - MLT1E3 LTR MaLR -9 615 1 564 364 40 3 chr4 66369864 66370188 -135958159 - L1MEc LINE L1 -6016 380 45 312 27 0 0 chr4 66370370 66370407 -135957940 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 1239 311 96 50 chr4 66370489 66371570 -135956777 + L2 LINE L2 2150 3257 -56 22 35 0 0 chr4 66372819 66372848 -135955499 + AT_rich Low_complexity Low_complexity 1 29 0 1662 205 153 91 chr4 66373022 66373700 -135954647 + LTR8A LTR ERV1 1 720 -7 428 360 31 13 chr4 66375659 66375887 -135952460 - L1ME LINE L1 -362 5759 5528 2314 103 0 0 chr4 66376026 66376327 -135952020 - AluSg SINE Alu -8 302 2 331 317 72 40 chr4 66376336 66376585 -135951762 - L1ME LINE L1 -838 5308 5052 208 288 0 0 chr4 66376740 66376820 -135951527 + A-rich Low_complexity Low_complexity 1 80 0 2022 142 3 0 chr4 66376893 66377188 -135951159 + AluSq SINE Alu 1 296 -17 2525 53 0 0 chr4 66377938 66378240 -135950107 + AluY SINE Alu 1 302 -9 277 323 36 26 chr4 66378394 66378586 -135949761 + L1ME LINE L1 5475 5668 -453 200 217 0 0 chr4 66378643 66378689 -135949658 + (TA)n Simple_repeat Simple_repeat 2 47 0 1117 147 301 34 chr4 66379026 66379381 -135948966 - LTR7 LTR ERV1 0 450 1 639 142 0 0 chr4 66379592 66379698 -135948649 + (TCTCC)n Simple_repeat Simple_repeat 3 108 0 1416 191 19 19 chr4 66379709 66379976 -135948371 - AluJo SINE Alu -45 267 1 21 0 0 0 chr4 66380048 66380069 -135948278 + AT_rich Low_complexity Low_complexity 1 21 0 225 387 14 35 chr4 66381061 66381134 -135947213 - MIR3 SINE MIR -51 157 87 1248 228 99 3 chr4 66381134 66381467 -135946880 - MLT1A1 LTR MaLR 0 365 1 225 387 14 35 chr4 66381467 66381535 -135946812 - MIR3 SINE MIR -121 87 19 21 57 0 0 chr4 66381585 66381620 -135946727 + AT_rich Low_complexity Low_complexity 1 35 0 5358 136 7 8 chr4 66381690 66382545 -135945802 + Tigger2 DNA MER2_type 3 856 -1862 720 199 50 37 chr4 66382541 66382702 -135945645 + Tigger2 DNA MER2_type 2556 2718 0 * 419 211 125 8 chr4 66382725 66382853 -135945494 + L1ME3A LINE L1 6027 6169 -1 201 372 26 0 chr4 66382990 66383068 -135945279 + MIR SINE MIR 167 246 -16 2159 159 31 21 chr4 66383355 66383802 -135944545 - MLT2D LTR ERVL 0 464 1 415 363 52 52 chr4 66384752 66385232 -135943115 + L2 LINE L2 2829 3308 -5 1212 216 22 0 chr4 66385531 66385855 -135942492 - L1PBa LINE L1 -5296 1567 1093 3692 222 60 9 chr4 66385856 66386845 -135941502 - L1PBa LINE L1 -5815 1048 10 2319 89 3 0 chr4 66387224 66387515 -135940832 - AluSp SINE Alu -19 294 3 648 323 77 65 chr4 66387520 66388147 -135940200 + L2 LINE L2 2683 3308 -5 25 75 0 0 chr4 66388383 66388436 -135939911 + AT_rich Low_complexity Low_complexity 1 53 0 234 174 0 0 chr4 66389507 66389553 -135938794 + GA-rich Low_complexity Low_complexity 1 46 0 2931 103 17 47 chr4 66390691 66391158 -135937189 + MLT2A2 LTR ERVL 1 453 0 1054 157 23 0 chr4 66391362 66391534 -135936813 + L1MC1 LINE L1 24 199 -6227 5695 202 20 8 chr4 66391534 66393370 -135934977 + L1MC1 LINE L1 4735 6593 -20 231 287 21 91 chr4 66394639 66394719 -135933628 - L2 LINE L2 0 3272 3205 2027 137 3 0 chr4 66394719 66395018 -135933329 + AluSx SINE Alu 1 300 -12 231 287 21 91 chr4 66395018 66395080 -135933267 - L2 LINE L2 -67 3205 3140 421 286 23 86 chr4 66395087 66395262 -135933085 - MIR SINE MIR -21 241 78 302 308 93 18 chr4 66395382 66395633 -135932714 - MLT1J1 LTR MaLR -128 322 53 245 247 62 99 chr4 66395673 66395754 -135932593 - MIR SINE MIR -177 85 8 2385 88 7 0 chr4 66396980 66397285 -135931062 - AluSp SINE Alu -6 307 1 227 314 126 38 chr4 66397942 66398101 -135930246 - MER5A DNA MER1_type -1 188 16 674 213 15 101 chr4 66398514 66398782 -135929565 - MER63B DNA MER1_type 0 434 190 496 284 6 49 chr4 66398875 66399037 -135929310 - MER63B DNA MER1_type -260 176 22 283 239 45 11 chr4 66399065 66399153 -135929194 + CT-rich Low_complexity Low_complexity 1 91 0 270 86 0 0 chr4 66399370 66399405 -135928942 - U2 snRNA snRNA -153 35 1 391 181 14 0 chr4 66400458 66400530 -135927817 - MER94 DNA DNA -51 83 11 212 378 67 0 chr4 66400948 66401067 -135927280 + MER5B DNA MER1_type 46 172 -6 456 325 148 25 chr4 66403035 66403548 -135924799 - L2 LINE L2 -591 2723 2148 1692 209 24 7 chr4 66405388 66405809 -135922538 - L1MEc LINE L1 -841 5288 4861 5005 153 44 40 chr4 66405820 66406645 -135921702 + L1MA7 LINE L1 5258 6089 -202 1932 128 35 62 chr4 66406645 66407019 -135921328 - THE1B LTR MaLR 0 364 1 5005 153 44 40 chr4 66407019 66407222 -135921125 + L1MA7 LINE L1 6089 6290 -1 213 39 0 0 chr4 66407394 66407420 -135920927 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 321 26 0 0 chr4 66407419 66407457 -135920890 + (CA)n Simple_repeat Simple_repeat 1 38 0 537 276 113 62 chr4 66407466 66408401 -135919946 - L1MEc LINE L1 -1537 4592 3610 347 282 39 26 chr4 66408502 66408736 -135919611 - L1MEc LINE L1 -2688 3441 3205 21 95 0 0 chr4 66408792 66408855 -135919492 + AT_rich Low_complexity Low_complexity 1 63 0 560 307 147 9 chr4 66408993 66409537 -135918810 - L1MEc LINE L1 -3281 2848 2230 22 0 0 0 chr4 66409537 66409559 -135918788 + AT_rich Low_complexity Low_complexity 1 22 0 391 265 68 52 chr4 66409935 66410198 -135918149 - L1MEc LINE L1 -4659 1651 1381 1756 236 11 0 chr4 66410198 66410559 -135917788 + MLT1A1 LTR MaLR 1 365 0 391 265 68 52 chr4 66410559 66410620 -135917727 - L1MEc LINE L1 -4929 1381 1322 453 309 94 43 chr4 66410659 66411051 -135917296 - L1MEc LINE L1 -4928 1191 780 2105 109 11 0 chr4 66411207 66411522 -135916825 - AluSq SINE Alu 0 318 1 203 132 53 0 chr4 66412229 66412267 -135916080 + CT-rich Low_complexity Low_complexity 3 42 0 180 0 0 0 chr4 66412714 66412734 -135915613 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2190 61 11 11 chr4 66412734 66413012 -135915335 - AluY SINE Alu -33 278 1 278 296 214 6 chr4 66413887 66414046 -135914301 - MIR SINE MIR 0 262 71 225 116 0 0 chr4 66414306 66414349 -135913998 - LTR66 LTR ERVL -174 436 394 249 33 0 0 chr4 66414353 66414383 -135913964 + (TA)n Simple_repeat Simple_repeat 2 31 0 689 336 15 12 chr4 66416176 66416435 -135911912 - ERVL LTR ERVL -3318 2446 2187 1364 221 145 52 chr4 66416543 66417005 -135911342 + MLT1D LTR MaLR 1 505 0 330 337 90 6 chr4 66417053 66417231 -135911116 - ERVL LTR ERVL -3542 1943 1751 292 380 80 9 chr4 66417365 66417591 -135910756 - ERVL LTR ERVL -4149 1615 1374 266 196 0 0 chr4 66418596 66418647 -135909700 + MLT1I LTR MaLR 357 407 -2 220 296 0 14 chr4 66418654 66418725 -135909622 + (CATATA)n Simple_repeat Simple_repeat 6 75 0 257 273 36 45 chr4 66418786 66418896 -135909451 - L2 LINE L2 -6 3307 3199 21 36 0 0 chr4 66418924 66418952 -135909395 + AT_rich Low_complexity Low_complexity 1 28 0 1337 167 21 0 chr4 66418959 66419199 -135909148 - L1MB2 LINE L1 -42 6129 5885 1017 278 74 62 chr4 66420188 66420976 -135907371 + L1ME LINE L1 51 847 -5223 1115 128 0 17 chr4 66420996 66421168 -135907179 + AluSp SINE Alu 145 313 0 671 267 123 54 chr4 66421174 66421729 -135906618 + L1ME LINE L1 868 1460 -4620 1585 258 61 16 chr4 66421743 66422378 -135905969 + L1ME LINE L1 2235 2898 -3182 630 237 13 26 chr4 66422396 66422552 -135905795 + MER58B DNA MER1_type 183 336 -5 1955 165 85 39 chr4 66422639 66423052 -135905295 - MSTB1 LTR MaLR 0 432 1 2175 234 12 2 chr4 66423084 66423585 -135904762 - MSTB1-int LTR MaLR -1145 506 1 1435 137 7 67 chr4 66423593 66423863 -135904484 - MSTB1 LTR MaLR -13 419 166 241 244 85 37 chr4 66424491 66424573 -135903774 + MIR SINE MIR 162 247 -15 22 35 0 0 chr4 66424573 66424602 -135903745 + AT_rich Low_complexity Low_complexity 1 29 0 1903 26 0 4 chr4 66424659 66424892 -135903455 - L1PA5 LINE L1 -5 6149 5918 378 0 0 0 chr4 66425089 66425131 -135903216 + (TA)n Simple_repeat Simple_repeat 2 43 0 324 0 0 0 chr4 66425927 66425963 -135902384 + (TG)n Simple_repeat Simple_repeat 1 36 0 255 61 0 0 chr4 66425963 66425996 -135902351 + (GA)n Simple_repeat Simple_repeat 2 34 0 284 343 6 50 chr4 66426302 66426483 -135901864 + MIR SINE MIR 3 175 -87 455 322 103 42 chr4 66426625 66426985 -135901362 + MLT1L LTR MaLR 10 391 -224 22 0 0 0 chr4 66428007 66428029 -135900318 + AT_rich Low_complexity Low_complexity 1 22 0 320 92 2 70 chr4 66428089 66428156 -135900191 - Alu SINE Alu -1 301 247 771 183 8 8 chr4 66428163 66428294 -135900053 - MER2 DNA MER2_type -214 131 1 792 184 82 110 chr4 66428467 66428722 -135899625 - MIR SINE MIR 0 262 15 2112 216 67 73 chr4 66429115 66429272 -135899075 + MLT1E2 LTR MaLR 1 157 -469 1680 168 78 26 chr4 66429272 66429618 -135898729 + THE1B LTR MaLR 1 364 0 10863 102 21 22 chr4 66429618 66430905 -135897442 + THE1B-int LTR MaLR 1 1288 -292 2313 104 7 0 chr4 66430905 66431214 -135897133 - AluY SINE Alu 0 311 1 10863 102 21 22 chr4 66431214 66431507 -135896840 + THE1B-int LTR MaLR 1288 1580 0 2175 145 5 27 chr4 66431507 66431879 -135896468 + THE1B LTR MaLR 1 364 0 2112 216 67 73 chr4 66431879 66432336 -135896011 + MLT1E2 LTR MaLR 154 613 -13 28 61 0 0 chr4 66433587 66433636 -135894711 + AT_rich Low_complexity Low_complexity 1 49 0 2190 96 0 0 chr4 66434204 66434514 -135893833 - AluSx SINE Alu 0 310 1 25 31 0 0 chr4 66434515 66434547 -135893800 + AT_rich Low_complexity Low_complexity 1 32 0 721 147 17 0 chr4 66435937 66436053 -135892294 + LTR54B LTR ERV1 1 118 -380 492 183 58 0 chr4 66436108 66436228 -135892119 + LTR54B LTR ERV1 212 338 -160 28 0 0 0 chr4 66436498 66436526 -135891821 + AT_rich Low_complexity Low_complexity 1 28 0 401 283 50 68 chr4 66436607 66436963 -135891384 - L1ME LINE L1 -202 5919 5571 1109 186 53 90 chr4 66439332 66439687 -135888660 + MLT1A1 LTR MaLR 7 348 -17 543 262 29 109 chr4 66440778 66440988 -135887359 - L2 LINE L2 0 3313 3121 181 333 0 0 chr4 66441321 66441378 -135886969 - L2 LINE L2 -587 2727 2671 791 321 61 21 chr4 66441428 66441805 -135886542 - L2 LINE L2 -2 3311 2920 1949 194 38 32 chr4 66442790 66443338 -135885009 - MLT2A2 LTR ERVL 0 554 1 38257 108 20 20 chr4 66443338 66448990 -135879357 - HERVL-A2-A2 LTR ERVL 0 5654 1 1957 192 43 27 chr4 66448990 66449536 -135878811 - MLT2A2 LTR ERVL 0 554 1 622 33 0 33 chr4 66450043 66450134 -135878213 + (TCTA)n Simple_repeat Simple_repeat 3 90 0 634 81 0 0 chr4 66450478 66450564 -135877783 - MER51A LTR ERV1 0 634 549 4832 96 7 4 chr4 66450565 66451319 -135877028 - MER51-int LTR ERV1 -5542 2274 1519 6568 51 10 8 chr4 66451319 66452182 -135876165 - L1PA3 LINE L1 0 6155 5291 252 284 0 0 chr4 66452348 66452415 -135875932 + G-rich Low_complexity Low_complexity 1 67 0 507 272 39 8 chr4 66453347 66453602 -135874745 + L1MCc LINE L1 18 402 -6021 6339 28 6 0 chr4 66453989 66454776 -135873571 - L1P LINE L1 -788 5358 4567 1150 116 0 0 chr4 66454776 66454949 -135873398 - MER51B-int LTR ERV1 -6974 1146 974 638 119 144 25 chr4 66454960 66454989 -135873358 - MER51B-int LTR ERV1 -7684 132 108 207 0 0 0 chr4 66454989 66455012 -135873335 + (GA)n Simple_repeat Simple_repeat 2 24 0 638 119 144 25 chr4 66455012 66455100 -135873247 - MER51B-int LTR ERV1 -7708 108 1 2389 107 13 49 chr4 66455100 66455491 -135872856 - MER51B LTR ERV1 0 377 1 3002 137 62 42 chr4 66456502 66457100 -135871247 - MER4B LTR ERV1 0 610 1 2275 161 27 10 chr4 66458225 66458657 -135869690 - MER61C LTR ERV1 0 434 7 5434 80 95 1 chr4 66458674 66459429 -135868918 + LTR12 LTR ERV1 1 826 0 338 323 46 46 chr4 66460194 66460389 -135867958 - MIR SINE MIR -4 258 64 2056 104 7 3 chr4 66460848 66461136 -135867211 + AluSq SINE Alu 19 307 -6 542 271 23 64 chr4 66461393 66461545 -135866802 - MER58A DNA MER1_type -2211 209 67 5992 112 14 13 chr4 66461545 66463619 -135864728 - L1PA14 LINE L1 0 6161 4087 542 271 23 64 chr4 66463619 66463684 -135864663 - MER58A DNA MER1_type -2353 67 1 227 209 35 93 chr4 66463949 66464035 -135864312 + MER112 DNA MER1_type 4 84 -176 703 173 19 2 chr4 66464281 66464500 -135863847 - LTR26 LTR ERV1 -14 589 336 * 923 219 53 32 chr4 66464469 66464716 -135863631 - THE1A LTR MaLR -103 252 1 2053 176 8 5 chr4 66465046 66465415 -135862932 - THE1A-int LTR MaLR -99 1481 1112 651 214 30 0 chr4 66465415 66465546 -135862801 + AluSg/x SINE Alu 165 299 -11 4238 79 2 0 chr4 66465546 66466102 -135862245 - THE1A-int LTR MaLR -1023 557 1 2599 104 0 0 chr4 66466102 66466457 -135861890 - THE1A LTR MaLR 0 355 1 4750 208 31 13 chr4 66466746 66468038 -135860309 - L1MC2 LINE L1 0 6344 5029 935 187 35 35 chr4 66468040 66468270 -135860077 - L1MC2 LINE L1 -1907 4239 4010 246 132 0 0 chr4 66468298 66468336 -135860011 - L1MC2 LINE L1 -2129 4017 3980 1739 203 22 17 chr4 66468338 66468698 -135859649 - MLT1D LTR MaLR -143 362 1 2048 137 0 3 chr4 66468986 66469279 -135859068 + AluSx SINE Alu 3 294 -18 270 405 9 0 chr4 66469280 66469396 -135858951 - L2 LINE L2 0 3272 3156 255 31 0 0 chr4 66469491 66469523 -135858824 + (TGG)n Simple_repeat Simple_repeat 3 34 0 257 327 173 39 chr4 66469573 66469827 -135858520 - L2 LINE L2 -340 2974 2687 2007 122 0 3 chr4 66469941 66470229 -135858118 + AluSc SINE Alu 1 287 -22 180 0 0 0 chr4 66470432 66470452 -135857895 + (CA)n Simple_repeat Simple_repeat 1 20 0 349 251 46 119 chr4 66471033 66471336 -135857011 - L1ME3A LINE L1 -2 6168 5888 331 335 107 19 chr4 66471342 66471605 -135856742 - L1MDa LINE L1 -4512 1914 1629 259 275 89 30 chr4 66471621 66471857 -135856490 - L1MDa LINE L1 -4945 1481 1232 58 28 0 0 chr4 66471904 66471976 -135856371 + AT_rich Low_complexity Low_complexity 1 72 0 677 236 53 13 chr4 66471979 66472204 -135856143 - L1MD2 LINE L1 -3 6356 6123 980 220 5 10 chr4 66472716 66472916 -135855431 + L1 LINE L1 4 202 -5753 5755 198 35 4 chr4 66472916 66474133 -135854214 + L1 LINE L1 3873 5126 -908 1720 206 61 21 chr4 66474135 66474513 -135853834 + MSTD LTR MaLR 2 394 -2 847 241 72 21 chr4 66474517 66474754 -135853593 + MSTD-int LTR MaLR 2 250 -1485 3509 161 5 93 chr4 66474761 66475538 -135852809 + L1PA6 LINE L1 5405 6113 -41 419 290 164 48 chr4 66475655 66475862 -135852485 + MIR SINE MIR 1 231 -31 1512 216 42 63 chr4 66475912 66476360 -135851987 + MLT2D LTR ERVL 1 463 -1 1785 246 75 45 chr4 66476517 66477093 -135851254 + MLT1E LTR MaLR 1 593 0 318 275 31 25 chr4 66478342 66478502 -135849845 + (CATATA)n Simple_repeat Simple_repeat 5 165 0 2045 117 3 3 chr4 66478561 66478852 -135849495 + AluSq SINE Alu 5 295 -18 210 274 168 53 chr4 66479065 66479160 -135849187 + MIR SINE MIR 86 191 -71 373 263 105 18 chr4 66480012 66480126 -135848221 - L2 LINE L2 -2 3311 3188 1821 88 0 30 chr4 66480212 66480474 -135847873 - AluSx SINE Alu -4 308 55 244 97 0 0 chr4 66480475 66480506 -135847841 + AluSx SINE Alu 15 45 -256 200 294 165 0 chr4 66480667 66480752 -135847595 + L2 LINE L2 3169 3267 -5 286 240 0 27 chr4 66481109 66481184 -135847163 + (CATA)n Simple_repeat Simple_repeat 2 74 0 42 36 0 0 chr4 66482497 66482553 -135845794 + AT_rich Low_complexity Low_complexity 1 56 0 212 231 0 0 chr4 66483286 66483325 -135845022 + (TG)n Simple_repeat Simple_repeat 2 40 0 210 211 22 22 chr4 66484258 66484348 -135843999 + GA-rich Low_complexity Low_complexity 4 93 0 197 65 32 0 chr4 66484664 66484695 -135843652 + (TGG)n Simple_repeat Simple_repeat 1 32 0 1834 158 3 7 chr4 66486032 66486336 -135842011 + AluSx SINE Alu 1 303 -9 234 182 148 23 chr4 66486612 66486700 -135841647 + MER5C DNA MER1_type 31 129 -195 1510 206 45 6 chr4 66486763 66487093 -135841254 - MER2 DNA MER2_type 0 344 2 1962 239 35 58 chr4 66487433 66488068 -135840279 - MER92B LTR ERV1 -16 620 1 1718 128 0 0 chr4 66488151 66488386 -135839961 + AluSx SINE Alu 47 281 -31 390 140 9 19 chr4 66488388 66488495 -135839852 + (TA)n Simple_repeat Simple_repeat 2 107 0 22 0 0 0 chr4 66489524 66489546 -135838801 + AT_rich Low_complexity Low_complexity 1 22 0 1794 142 139 23 chr4 66489728 66490073 -135838274 + MSTA LTR MaLR 42 426 -2 21 0 0 0 chr4 66490818 66490839 -135837508 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chr4 66491302 66491330 -135837017 + (TA)n Simple_repeat Simple_repeat 2 29 0 1715 217 99 18 chr4 66491497 66491931 -135836416 + MLT1D LTR MaLR 6 474 -31 217 440 28 14 chr4 66491967 66492108 -135836239 - L2 LINE L2 -222 3050 2908 2181 203 84 13 chr4 66492110 66492563 -135835784 - MLT1D LTR MaLR 0 505 21 274 349 150 21 chr4 66493029 66493416 -135834931 - L2 LINE L2 -889 2425 1989 2447 216 18 15 chr4 66493419 66494034 -135834313 - L1PA16 LINE L1 -2144 4002 3386 * 5738 177 29 15 chr4 66494031 66495608 -135832739 + L1PA16 LINE L1 4019 5573 -593 1994 129 0 0 chr4 66495608 66495886 -135832461 + AluSg SINE Alu 1 278 -32 198 71 0 0 chr4 66495886 66495914 -135832433 + (CAA)n Simple_repeat Simple_repeat 3 30 0 5738 177 29 15 chr4 66495914 66496460 -135831887 + L1PA16 LINE L1 5572 6166 0 486 154 10 19 chr4 66497262 66497366 -135830981 + C-rich Low_complexity Low_complexity 1 103 0 2157 107 0 0 chr4 66497366 66497656 -135830691 - AluSc SINE Alu -19 290 1 335 287 0 0 chr4 66497927 66498028 -135830319 - L1ME LINE L1 -452 5669 5569 2509 98 6 3 chr4 66498477 66498835 -135829512 - L1PA10 LINE L1 -9 6159 5801 1361 100 0 0 chr4 66498835 66499025 -135829322 + L1PA10 LINE L1 5582 5771 -397 198 0 0 0 chr4 66499378 66499400 -135828947 + (T)n Simple_repeat Simple_repeat 1 22 0 1919 259 52 30 chr4 66499514 66500348 -135827999 - L1MCa LINE L1 -2633 4308 3457 273 98 0 0 chr4 66500362 66500403 -135827944 + (TCCC)n Simple_repeat Simple_repeat 2 42 0 334 209 121 30 chr4 66500404 66500537 -135827810 - L1MCa LINE L1 -4892 2051 1866 751 200 0 12 chr4 66500538 66500698 -135827649 - FRAM SINE Alu 0 176 19 238 239 53 129 chr4 66500708 66500896 -135827451 - L1MCa LINE L1 -4941 2000 1844 1823 191 21 0 chr4 66500896 66501236 -135827111 + MER7A DNA MER2_type 2 346 0 238 239 53 129 chr4 66501236 66501365 -135826982 - L1MCa LINE L1 -5097 1844 1707 740 165 8 0 chr4 66501374 66501495 -135826852 - AluJo SINE Alu -178 134 13 2232 257 29 60 chr4 66501530 66501977 -135826370 - L1MCa LINE L1 -4887 1536 1128 1120 229 130 83 chr4 66501977 66502423 -135825924 - MLT1C LTR MaLR 0 467 1 2232 257 29 60 chr4 66502423 66502848 -135825499 - L1MCa LINE L1 -5295 1128 691 514 272 39 8 chr4 66503420 66503675 -135824672 - L1MCa LINE L1 -6021 402 18 203 103 26 0 chr4 66504480 66504519 -135823828 + T-rich Low_complexity Low_complexity 2 41 0 194 345 0 23 chr4 66505897 66505984 -135822363 - MIR3 SINE MIR -122 86 2 29 28 0 0 chr4 66506648 66506684 -135821663 + AT_rich Low_complexity Low_complexity 1 36 0 326 207 15 71 chr4 66507006 66507116 -135821231 - MLT1H LTR MaLR -2 540 449 338 266 125 102 chr4 66507162 66507467 -135820880 - MLT1H LTR MaLR -237 312 1 273 372 31 40 chr4 66507470 66507693 -135820654 - L2 LINE L2 -672 2642 2422 184 323 39 71 chr4 66507680 66507807 -135820540 - MIR SINE MIR -138 124 2 * 673 214 69 35 chr4 66509487 66509761 -135818586 - LTR43 LTR ERV1 -64 615 174 266 333 139 6 chr4 66510982 66511162 -135817185 + L2 LINE L2 2162 2365 -949 1069 293 147 25 chr4 66511236 66511766 -135816581 - MLT1G1 LTR MaLR 0 595 1 307 307 0 55 chr4 66511778 66511905 -135816442 + L2 LINE L2 2375 2494 -820 891 203 6 0 chr4 66511943 66512101 -135816246 - AluJb SINE Alu -18 294 136 2525 55 0 3 chr4 66512446 66512758 -135815589 + AluY SINE Alu 1 311 0 22 80 0 0 chr4 66512971 66513021 -135815326 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr4 66513875 66513900 -135814447 + AT_rich Low_complexity Low_complexity 1 25 0 889 238 145 18 chr4 66514127 66514440 -135813907 - MLT1E LTR MaLR 0 593 290 3679 153 26 2 chr4 66514440 66515060 -135813287 - MER41B LTR ERV1 0 635 1 1481 243 76 51 chr4 66515115 66515772 -135812575 + LTR68 LTR ERV1 1 740 0 523 253 82 70 chr4 66515773 66515931 -135812416 - MLT1E LTR MaLR -433 160 1 26 93 0 0 chr4 66515951 66516026 -135812321 + AT_rich Low_complexity Low_complexity 1 75 0 216 182 45 0 chr4 66517377 66517421 -135810926 + CT-rich Low_complexity Low_complexity 3 48 0 21 36 0 0 chr4 66517938 66517966 -135810381 + AT_rich Low_complexity Low_complexity 1 28 0 4552 117 81 79 chr4 66518048 66519467 -135808880 - pTR5 LTR ERV1 0 2438 66 1614 228 8 0 chr4 66519468 66519828 -135808519 + MLT1A1 LTR MaLR 3 365 0 21 71 0 0 chr4 66519954 66519996 -135808351 + AT_rich Low_complexity Low_complexity 1 42 0 1756 134 30 4 chr4 66520221 66520483 -135807864 + THE1B LTR MaLR 18 286 -78 10017 97 36 47 chr4 66520497 66522090 -135806257 + THE1B-int LTR MaLR 1 1575 -5 1803 127 40 4 chr4 66522095 66522371 -135805976 + THE1B LTR MaLR 1 286 -78 22 56 0 0 chr4 66522515 66522551 -135805796 + AT_rich Low_complexity Low_complexity 1 36 0 842 316 96 80 chr4 66522636 66523576 -135804771 + L2 LINE L2 1879 2833 -481 1124 146 0 0 chr4 66523704 66523875 -135804472 - AluSg/x SINE Alu -12 300 130 26 30 0 0 chr4 66525605 66525638 -135802709 + AT_rich Low_complexity Low_complexity 1 33 0 1270 194 39 39 chr4 66525696 66526006 -135802341 - AluJo SINE Alu -2 310 1 287 150 17 0 chr4 66527738 66527798 -135800549 + GA-rich Low_complexity Low_complexity 3 63 0 21 57 0 0 chr4 66529011 66529046 -135799301 + AT_rich Low_complexity Low_complexity 1 35 0 201 233 0 0 chr4 66529675 66529718 -135798629 + GA-rich Low_complexity Low_complexity 4 46 0 246 164 0 0 chr4 66531181 66531236 -135797111 + (TA)n Simple_repeat Simple_repeat 1 55 0 2194 102 24 0 chr4 66531236 66531530 -135796817 - AluSp SINE Alu -12 301 1 21 82 0 0 chr4 66531688 66531737 -135796610 + AT_rich Low_complexity Low_complexity 1 49 0 243 0 0 0 chr4 66532421 66532448 -135795899 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 189 107 0 0 chr4 66532577 66532605 -135795742 + (ATG)n Simple_repeat Simple_repeat 2 29 0 593 281 63 60 chr4 66532608 66533085 -135795262 - LTR33A LTR ERVL 0 523 7 288 263 40 0 chr4 66533120 66533196 -135795151 - MIR SINE MIR -68 194 116 216 0 0 0 chr4 66533672 66533696 -135794651 + (A)n Simple_repeat Simple_repeat 1 24 0 673 280 35 35 chr4 66533696 66533953 -135794394 - MLT1J LTR MaLR -250 261 5 373 361 83 35 chr4 66533953 66534049 -135794298 - L2 LINE L2 -1876 1438 1348 1887 159 7 0 chr4 66534049 66534345 -135794002 + AluSx SINE Alu 3 300 -12 373 361 83 35 chr4 66534345 66534680 -135793667 - L2 LINE L2 -1966 1348 986 723 111 17 0 chr4 66534685 66534802 -135793545 - Tigger4(Zombi) DNA MER2_type -66 2665 2547 1695 160 23 0 chr4 66534902 66535319 -135793028 - L1P5 LINE L1 -602 5552 5128 3085 203 63 4 chr4 66535328 66536077 -135792270 - L1 LINE L1 -1101 5045 4253 234 115 66 0 chr4 66537805 66537866 -135790481 + L1MA7 LINE L1 6226 6290 -1 21 0 0 0 chr4 66537866 66537887 -135790460 + AT_rich Low_complexity Low_complexity 1 21 0 461 348 78 30 chr4 66538239 66538779 -135789568 - L2 LINE L2 -2561 753 188 219 248 34 86 chr4 66538962 66539079 -135789268 + L2 LINE L2 3172 3282 -31 1047 139 0 6 chr4 66539121 66539279 -135789068 + Tigger4(Zombi) DNA MER2_type 4 160 -2571 * 3209 106 37 4 chr4 66539277 66539767 -135788580 + Tigger4(Zombi) DNA MER2_type 2222 2727 -4 1137 156 6 0 chr4 66539769 66539948 -135788399 - AluJb SINE Alu -3 309 130 438 102 10 41 chr4 66539948 66540046 -135788301 + (TTTA)n Simple_repeat Simple_repeat 3 97 0 523 211 0 19 chr4 66540046 66540150 -135788197 - FLAM_C SINE Alu -33 110 9 330 253 288 51 chr4 66540264 66540556 -135787791 - Charlie8 DNA MER1_type -1971 446 86 21 0 0 0 chr4 66541795 66541816 -135786531 + AT_rich Low_complexity Low_complexity 1 21 0 28 79 0 0 chr4 66542195 66542258 -135786089 + AT_rich Low_complexity Low_complexity 1 63 0 2264 148 38 64 chr4 66542433 66542932 -135785415 - LTR19A LTR ERV1 0 486 1 2128 101 6 55 chr4 66543133 66543461 -135784886 + AluSx SINE Alu 1 312 0 22 35 0 0 chr4 66543484 66543513 -135784834 + AT_rich Low_complexity Low_complexity 1 29 0 1418 201 147 7 chr4 66543598 66543995 -135784352 + MER89 LTR ERV1 2 557 -2 350 64 0 0 chr4 66544048 66544095 -135784252 - MER34 LTR ERV1 -49 493 447 * 485 239 161 85 chr4 66544064 66544512 -135783835 - MER34C LTR ERV1 -64 521 40 1084 169 93 119 chr4 66544613 66545075 -135783272 + LTR7 LTR ERV1 1 450 0 240 111 0 0 chr4 66545103 66545139 -135783208 + (A)n Simple_repeat Simple_repeat 1 36 0 457 65 0 0 chr4 66545214 66545276 -135783071 - Alu SINE Alu -16 293 232 355 64 0 0 chr4 66545277 66545324 -135783023 - Alu SINE Alu -252 48 2 294 379 106 1 chr4 66545609 66545815 -135782532 - MIR SINE MIR 0 262 38 184 323 62 0 chr4 66545996 66546061 -135782286 - L2 LINE L2 0 3313 3245 603 383 30 22 chr4 66546808 66547210 -135781137 - ERVL LTR ERVL -898 4866 4462 365 294 0 0 chr4 66547352 66547444 -135780903 - MER81 DNA DNA -22 92 1 576 335 15 20 chr4 66547454 66547657 -135780690 - ERVL LTR ERVL -1467 4297 4096 453 204 126 58 chr4 66547989 66548180 -135780167 - MLT1H LTR MaLR 0 549 346 404 295 121 0 chr4 66548214 66548380 -135779967 - MLT1H LTR MaLR -264 285 100 602 315 119 40 chr4 66548449 66548852 -135779495 - MLT2E LTR ERVL -7 621 187 36 0 0 0 chr4 66550473 66550509 -135777838 + AT_rich Low_complexity Low_complexity 1 36 0 189 196 0 0 chr4 66550865 66550911 -135777436 + CT-rich Low_complexity Low_complexity 3 48 0 970 222 76 60 chr4 66551545 66551975 -135776372 - MER39 LTR ERV1 0 707 67 5599 83 32 3 chr4 66552280 66553037 -135775310 + LTR17 LTR ERV1 1 779 -1 2131 141 11 8 chr4 66553982 66554336 -135774011 + THE1A LTR MaLR 1 355 0 10917 118 9 1 chr4 66554336 66555903 -135772444 + THE1A-int LTR MaLR 1 1580 0 2338 113 14 8 chr4 66555903 66556256 -135772091 + THE1A LTR MaLR 1 355 0 725 257 33 13 chr4 66556370 66556584 -135771763 - MSTD LTR MaLR -2 430 215 708 157 41 0 chr4 66556634 66556755 -135771592 - AluJb SINE Alu -26 286 161 4194 83 40 4 chr4 66556761 66557318 -135771029 - LTR17 LTR ERV1 0 780 204 721 236 151 25 chr4 66557768 66558086 -135770261 + MER93b LTR ERV1 14 371 -2 4882 139 62 13 chr4 66558307 66559161 -135769186 - MER4D LTR ERV1 -4 899 4 4126 65 86 0 chr4 66559278 66559836 -135768511 + L1PA5 LINE L1 5549 6154 0 21 0 0 0 chr4 66560005 66560026 -135768321 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr4 66560342 66560366 -135767981 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr4 66560779 66560801 -135767546 + AT_rich Low_complexity Low_complexity 1 22 0 387 83 0 0 chr4 66561375 66561435 -135766912 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 233 335 96 34 chr4 66561435 66561674 -135766673 - L2 LINE L2 -1362 1952 1699 189 289 60 36 chr4 66561941 66562024 -135766323 - L2 LINE L2 -1571 1743 1659 218 184 69 0 chr4 66562024 66562111 -135766236 + (TA)n Simple_repeat Simple_repeat 1 93 0 300 250 107 0 chr4 66562113 66562197 -135766150 + L1MC4 LINE L1 6611 6703 -1339 27 0 0 0 chr4 66562197 66562224 -135766123 + AT_rich Low_complexity Low_complexity 1 27 0 1723 181 3 3 chr4 66562225 66562513 -135765834 - AluJb SINE Alu -24 288 1 2554 309 112 40 chr4 66562842 66563291 -135765056 - L2 LINE L2 -473 2841 2426 2039 114 51 42 chr4 66563291 66563625 -135764722 + MER1B DNA MER1_type 1 337 0 2554 309 112 40 chr4 66563625 66563954 -135764393 - L2 LINE L2 -888 2426 2122 2005 180 78 2 chr4 66563954 66564349 -135763998 - MSTB LTR MaLR 0 426 2 2554 309 112 40 chr4 66564349 66564975 -135763372 - L2 LINE L2 -1192 2122 1334 999 375 47 19 chr4 66565002 66565400 -135762947 + L2 LINE L2 921 1349 -1965 1621 164 46 26 chr4 66565400 66565704 -135762643 - AluJo SINE Alu -2 310 1 999 375 47 19 chr4 66565704 66566027 -135762320 + L2 LINE L2 1349 1662 -1652 22 35 0 0 chr4 66566119 66566148 -135762199 + AT_rich Low_complexity Low_complexity 1 29 0 4651 143 128 31 chr4 66566631 66568227 -135760120 + L1MC1 LINE L1 29 1468 -4958 1532 246 17 11 chr4 66568227 66568589 -135759758 - MLT1A1 LTR MaLR 0 365 2 4651 143 128 31 chr4 66568589 66568652 -135759695 + L1MC1 LINE L1 1468 1523 -4903 1948 155 7 3 chr4 66568652 66568961 -135759386 + AluSx SINE Alu 1 310 -2 4651 143 128 31 chr4 66568961 66569033 -135759314 + L1MC1 LINE L1 1523 1996 -4430 * 7549 222 48 23 chr4 66569026 66572568 -135755779 + L1MC1 LINE L1 2946 6579 -34 1398 235 13 15 chr4 66573736 66574088 -135754259 + MLT1A1 LTR MaLR 41 365 0 242 306 122 37 chr4 66574475 66574746 -135753601 - MLT1J LTR MaLR -41 470 177 295 377 71 22 chr4 66575305 66575573 -135752774 + L2 LINE L2 1905 2185 -1129 313 261 27 18 chr4 66575874 66575985 -135752362 + MLT1I LTR MaLR 278 389 -20 1264 214 76 34 chr4 66576169 66576524 -135751823 + MER39 LTR ERV1 338 707 0 356 242 33 22 chr4 66577068 66577159 -135751188 + MLT1I LTR MaLR 281 372 -37 2381 119 36 8 chr4 66577159 66577546 -135750801 - MER48 LTR ERV1 0 398 1 1034 303 65 45 chr4 66577588 66578053 -135750294 + LTR67 LTR ERVL 40 513 -44 439 328 68 0 chr4 66578262 66578454 -135749893 + L2 LINE L2 3109 3313 0 474 391 21 5 chr4 66579155 66579347 -135749000 - MER91A DNA MER1_type 0 196 2 381 354 23 47 chr4 66579403 66579526 -135748821 - MIR SINE MIR -16 246 129 1874 101 87 7 chr4 66579526 66579802 -135748545 - AluSq SINE Alu -15 298 1 381 354 23 47 chr4 66579802 66579893 -135748454 - MIR SINE MIR -133 129 37 384 312 162 50 chr4 66579916 66580391 -135747956 - MLT1H LTR MaLR -15 534 7 21 0 0 0 chr4 66580409 66580430 -135747917 + AT_rich Low_complexity Low_complexity 1 21 0 3854 67 10 14 chr4 66580708 66581215 -135747132 + PABL_A LTR ERV1 1 505 -155 3857 230 34 9 chr4 66581315 66582397 -135745950 - L1 LINE L1 -2469 3677 2569 3744 281 39 48 chr4 66582392 66583160 -135745187 - L1PBa LINE L1 -5219 1644 871 * 842 78 86 0 chr4 66583160 66583288 -135745059 - MER85 DNA T2_type 0 139 1 3744 281 39 48 chr4 66583288 66584263 -135744084 - L1PBa LINE L1 -5992 871 3 2172 205 85 18 chr4 66584328 66584836 -135743511 - MER34 LTR ERV1 0 542 1 690 106 0 0 chr4 66584883 66584987 -135743360 + L1MA10 LINE L1 6231 6334 0 237 284 152 27 chr4 66585563 66585734 -135742613 - MIR3 SINE MIR -13 195 2 915 211 28 0 chr4 66586215 66586395 -135741952 + MER20 DNA MER1_type 35 219 0 200 290 58 29 chr4 66586535 66586604 -135741743 + L2 LINE L2 3154 3224 -48 1286 244 37 54 chr4 66588819 66589283 -135739064 + MLT2C2 LTR ERVL 1 456 -8 317 316 2 0 chr4 66589420 66589517 -135738830 + MIR SINE MIR 53 149 -64 273 151 0 0 chr4 66589971 66590024 -135738323 + (CA)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr4 66590522 66590543 -135737804 + AT_rich Low_complexity Low_complexity 1 21 0 3626 74 4 57 chr4 66591042 66591583 -135736764 - L1PA7 LINE L1 -1 6153 5642 238 96 106 0 chr4 66591589 66591693 -135736654 + (TA)n Simple_repeat Simple_repeat 1 115 0 32198 111 8 57 chr4 66591693 66597624 -135730723 - L1PA7 LINE L1 -508 5646 12 2558 30 3 7 chr4 66597684 66597982 -135730365 + AluY SINE Alu 1 297 -14 248 348 0 0 chr4 66598168 66598260 -135730087 - L2 LINE L2 0 3313 3222 1250 298 105 28 chr4 66598264 66598912 -135729435 - L2 LINE L2 -1262 2052 1355 24 67 0 0 chr4 66599049 66599094 -135729253 + AT_rich Low_complexity Low_complexity 1 45 0 239 351 72 0 chr4 66599989 66600100 -135728247 + MIR SINE MIR 48 166 -96 970 280 74 48 chr4 66600184 66601140 -135727207 - L1ME2 LINE L1 -9 6653 5675 450 178 27 20 chr4 66601140 66601286 -135727061 + CT-rich Low_complexity Low_complexity 3 149 0 2290 265 104 17 chr4 66601338 66602510 -135725837 - L1ME2 LINE L1 -1052 5592 4319 2560 221 37 5 chr4 66602779 66603348 -135724999 + MER82 DNA MER2_type 61 647 -6 24 0 0 0 chr4 66603406 66603430 -135724917 + AT_rich Low_complexity Low_complexity 1 24 0 784 275 102 4 chr4 66603505 66604319 -135724028 - L1ME2 LINE L1 -3009 3635 2673 21 0 0 0 chr4 66604331 66604352 -135723995 + AT_rich Low_complexity Low_complexity 1 21 0 227 233 99 23 chr4 66604375 66604547 -135723800 - L1ME2 LINE L1 -4051 2593 2409 198 0 0 0 chr4 66604631 66604653 -135723694 + (TATAA)n Simple_repeat Simple_repeat 1 22 0 605 290 97 56 chr4 66604674 66605319 -135723028 - L1ME2 LINE L1 -4362 2282 1516 500 223 50 58 chr4 66605326 66605702 -135722645 - L1ME2 LINE L1 -5054 1580 1208 22 35 0 0 chr4 66606626 66606655 -135721692 + AT_rich Low_complexity Low_complexity 1 29 0 1266 218 15 85 chr4 66607216 66607546 -135720801 + MLT1A1 LTR MaLR 55 361 -4 2608 229 50 16 chr4 66607547 66608254 -135720093 - Charlie1a DNA MER1_type -302 1153 423 2609 89 25 45 chr4 66608309 66608712 -135719635 + MLT2A1 LTR ERVL 1 395 -49 369 0 0 0 chr4 66608712 66608753 -135719594 + (TG)n Simple_repeat Simple_repeat 2 42 0 1211 226 10 10 chr4 66609040 66609336 -135719011 + Charlie1a DNA MER1_type 72 367 -1088 281 51 0 26 chr4 66609368 66609407 -135718940 - MLT2A2 LTR ERVL 0 453 416 301 68 0 34 chr4 66609409 66609468 -135718879 + (TA)n Simple_repeat Simple_repeat 2 58 0 826 169 74 17 chr4 66609480 66609675 -135718672 - THE1C LTR MaLR -159 205 1 6242 146 29 14 chr4 66609680 66610712 -135717635 - THE1C-int LTR MaLR -6 1574 527 483 202 0 39 chr4 66610712 66610816 -135717531 - MSTA LTR MaLR -328 100 1 * 1260 195 34 4 chr4 66610816 66611072 -135717275 + MER44D DNA MER2_type 181 499 -106 347 47 0 0 chr4 66611073 66611116 -135717231 - MER4B LTR ERV1 0 610 568 1518 131 44 69 chr4 66611216 66611729 -135716618 - MER4A LTR ERV1 -96 568 1 495 229 10 0 chr4 66611737 66611833 -135716514 + MER44D DNA MER2_type 504 600 -5 241 299 0 35 chr4 66612436 66612523 -135715824 - MLT1H LTR MaLR -13 536 453 273 151 0 0 chr4 66612958 66613011 -135715336 + A-rich Low_complexity Low_complexity 1 53 0 1518 216 121 12 chr4 66613049 66613470 -135714877 + MLT1C LTR MaLR 1 467 0 216 322 7 77 chr4 66614656 66614838 -135713509 - MIR SINE MIR -56 206 37 212 250 0 18 chr4 66615013 66615069 -135713278 + GA-rich Low_complexity Low_complexity 2 56 0 690 232 14 7 chr4 66715260 66715398 -135612949 - ERVL LTR ERVL -2280 3484 3346 1433 325 57 26 chr4 66715531 66716585 -135611762 - ERVL LTR ERVL -2676 3088 2068 2075 148 0 0 chr4 66716585 66716889 -135611458 - AluSx SINE Alu -8 304 1 1433 325 57 26 chr4 66716889 66717078 -135611269 - ERVL LTR ERVL -3696 2068 1886 2243 138 44 64 chr4 66717078 66717513 -135610834 + MSTA LTR MaLR 3 428 0 1433 325 57 26 chr4 66717513 66717778 -135610569 - ERVL LTR ERVL -3878 1886 1453 587 314 138 44 chr4 66719295 66720089 -135608258 + L2 LINE L2 1699 2567 -747 529 305 84 0 chr4 66722062 66722265 -135606082 + MIR SINE MIR 42 261 -1 2178 109 0 3 chr4 66722267 66722561 -135605786 - AluSq SINE Alu -18 295 3 279 279 114 60 chr4 66722933 66723134 -135605213 + MIR SINE MIR 47 258 -4 767 362 17 6 chr4 66723519 66723881 -135604466 - LTR16A LTR ERVL -50 400 35 1048 214 49 106 chr4 66723938 66724325 -135604022 - MLT1A1 LTR MaLR 0 365 1 1222 232 47 52 chr4 66725879 66726374 -135601973 + Charlie4a DNA MER1_type 2 493 -15 216 100 40 60 chr4 66726854 66726904 -135601443 + T-rich Low_complexity Low_complexity 4 52 0 5629 89 11 10 chr4 66726911 66727719 -135600628 - L1PA13 LINE L1 -3 6160 5352 2323 131 14 3 chr4 66727843 66728201 -135600146 - THE1B LTR MaLR 0 364 3 324 48 0 0 chr4 66730140 66730182 -135598165 + (TG)n Simple_repeat Simple_repeat 2 43 0 1480 217 52 6 chr4 66730182 66730527 -135597820 - MLT1A1 LTR MaLR -3 362 2 330 26 0 0 chr4 66730527 66730566 -135597781 + (TG)n Simple_repeat Simple_repeat 2 40 0 186 171 0 0 chr4 66730959 66731000 -135597347 + (TA)n Simple_repeat Simple_repeat 1 41 0 354 45 0 0 chr4 66731809 66731853 -135596494 + (TA)n Simple_repeat Simple_repeat 2 45 0 27 0 0 0 chr4 66732526 66732553 -135595794 + AT_rich Low_complexity Low_complexity 1 27 0 1446 134 47 7 chr4 66733145 66733421 -135594926 - L1MA8 LINE L1 -4 6287 6001 22 56 0 0 chr4 66734191 66734227 -135594120 + AT_rich Low_complexity Low_complexity 1 36 0 301 277 143 61 chr4 66734693 66734977 -135593370 + LTR33 LTR ERVL 151 469 -52 2124 85 10 3 chr4 66734977 66735272 -135593075 - AluY SINE Alu -14 297 1 301 277 143 61 chr4 66735272 66735330 -135593017 + LTR33 LTR ERVL 469 521 0 796 313 62 11 chr4 66735724 66735999 -135592348 - LTR16C LTR ERVL -4 487 199 198 143 0 0 chr4 66736076 66736111 -135592236 + (A)n Simple_repeat Simple_repeat 1 35 0 676 103 51 0 chr4 66736810 66736966 -135591381 + (TA)n Simple_repeat Simple_repeat 1 164 0 1959 121 4 7 chr4 66736978 66737295 -135591052 + AluSc SINE Alu 1 316 0 2085 128 7 0 chr4 66737466 66737771 -135590576 + AluSc SINE Alu 1 307 -2 1656 157 48 3 chr4 66738000 66738294 -135590053 + AluJb SINE Alu 1 307 -5 425 101 0 14 chr4 66738294 66738363 -135589984 + (GGAA)n Simple_repeat Simple_repeat 1 68 0 26 50 0 0 chr4 66738540 66738580 -135589767 + AT_rich Low_complexity Low_complexity 1 40 0 2045 152 126 3 chr4 66739520 66739901 -135588446 + MSTA LTR MaLR 1 428 0 799 154 7 0 chr4 66739922 66740065 -135588282 - L1MA4 LINE L1 -6 6294 6151 1976 135 17 0 chr4 66740084 66740380 -135587967 - AluY SINE Alu -10 301 1 2398 183 83 2 chr4 66740798 66741305 -135587042 - L1MB2 LINE L1 -8 6163 5616 21 0 0 0 chr4 66743050 66743071 -135585276 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 66743121 66743158 -135585189 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 66743434 66743455 -135584892 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 66744151 66744188 -135584159 + AT_rich Low_complexity Low_complexity 1 37 0 268 343 100 0 chr4 66744362 66744502 -135583845 + MIR SINE MIR 79 232 -30 899 233 27 4 chr4 66745195 66745457 -135582890 - L1MA4 LINE L1 -6 6294 6027 2246 71 3 3 chr4 66745937 66746220 -135582127 + AluY SINE Alu 11 293 -18 31 26 0 0 chr4 66746220 66746258 -135582089 + AT_rich Low_complexity Low_complexity 1 38 0 35 24 0 0 chr4 66746533 66746575 -135581772 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr4 66747228 66747250 -135581097 + AT_rich Low_complexity Low_complexity 1 22 0 296 281 79 0 chr4 66747711 66747800 -135580547 + MIR SINE MIR 66 161 -101 217 298 18 0 chr4 66747863 66747920 -135580427 - L3 LINE CR1 -1050 527 470 2260 91 3 0 chr4 66747954 66748250 -135580097 - AluSp SINE Alu -16 297 1 444 246 9 0 chr4 66748558 66748672 -135579675 + MER3 DNA MER1_type 2 116 -93 1669 211 66 52 chr4 66748672 66748841 -135579506 + MLT2B1 LTR ERVL 3 168 -352 1898 146 7 0 chr4 66748841 66749142 -135579205 + AluSx SINE Alu 1 303 -9 1669 211 66 52 chr4 66749142 66749413 -135578934 + MLT2B1 LTR ERVL 168 449 -71 185 136 61 0 chr4 66749448 66749514 -135578833 + (TA)n Simple_repeat Simple_repeat 1 70 0 329 175 0 0 chr4 66749610 66749667 -135578680 + MLT2B1 LTR ERVL 408 464 0 2269 248 49 4 chr4 66749667 66750304 -135578043 + ERVL LTR ERVL 1 687 -4994 546 167 8 63 chr4 66750304 66750430 -135577917 + MER3 DNA MER1_type 91 209 0 269 167 21 0 chr4 66750389 66750437 -135577910 - MER3 DNA MER1_type -120 89 41 * 251 719 0 0 chr4 66750596 66750735 -135577612 + T-rich Low_complexity Low_complexity 1 139 0 1569 188 3 7 chr4 66750753 66751035 -135577312 + AluJb SINE Alu 1 281 -31 22 0 0 0 chr4 66752284 66752306 -135576041 + AT_rich Low_complexity Low_complexity 1 22 0 270 317 87 19 chr4 66753548 66753709 -135574638 + MIR SINE MIR 90 261 -1 353 336 10 0 chr4 66754166 66754270 -135574077 + MIR SINE MIR 2 106 -156 745 330 77 41 chr4 66754457 66755249 -135573098 + ERVL LTR ERVL 1941 2719 -2935 2123 124 50 19 chr4 66755318 66755680 -135572667 + THE1C LTR MaLR 1 373 -2 2219 262 210 0 chr4 66755682 66756316 -135572031 + L1MA2 LINE L1 507 1273 -6292 12068 165 61 32 chr4 66756324 66757094 -135571253 + L1MA2 LINE L1 3628 4374 -3349 1832 141 3 18 chr4 66757094 66757378 -135570969 + AluSx SINE Alu 22 301 -11 12068 165 61 32 chr4 66757378 66760079 -135568268 + L1MA2 LINE L1 4374 7229 -494 399 41 0 0 chr4 66760079 66760128 -135568219 + (CA)n Simple_repeat Simple_repeat 2 50 0 12068 165 61 32 chr4 66760128 66760560 -135567787 + L1MA2 LINE L1 7229 7647 -76 1115 246 199 14 chr4 66760884 66761310 -135567037 - MLT1D LTR MaLR 0 505 1 333 266 13 0 chr4 66761339 66761418 -135566929 + ERVL LTR ERVL 3105 3184 -2580 437 365 29 0 chr4 66761437 66761675 -135566672 + ERVL LTR ERVL 2857 3101 -2384 325 375 64 27 chr4 66761728 66762172 -135566175 + ERVL LTR ERVL 3295 3750 -1735 23 0 0 0 chr4 66762531 66762554 -135565793 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 66762778 66762800 -135565547 + AT_rich Low_complexity Low_complexity 1 22 0 444 186 21 36 chr4 66762818 66762958 -135565389 - L1MB8 LINE L1 -2 6176 6039 1207 232 116 52 chr4 66762958 66763423 -135564924 + L1MD3 LINE L1 7444 7938 -57 289 194 0 0 chr4 66763429 66763491 -135564856 - L1MB8 LINE L1 -7 6171 6110 * 1918 246 78 17 chr4 66763485 66764326 -135564021 - L1M4 LINE L1 -648 5536 4639 3666 117 12 12 chr4 66765262 66765844 -135562503 - L1PA14 LINE L1 0 6161 5580 22 35 0 0 chr4 66766578 66766607 -135561740 + AT_rich Low_complexity Low_complexity 1 29 0 484 306 63 24 chr4 66767462 66767877 -135560470 - MLT1L LTR MaLR -65 550 88 221 383 83 8 chr4 66768036 66768156 -135560191 - MIR3 SINE MIR -70 138 10 216 158 0 0 chr4 66768882 66768920 -135559427 + (TG)n Simple_repeat Simple_repeat 2 39 0 1707 189 48 48 chr4 66768927 66769323 -135559024 + MSTD LTR MaLR 1 396 0 3705 161 28 68 chr4 66769474 66770288 -135558059 + L1PA15 LINE L1 5384 6165 0 23 0 0 0 chr4 66770770 66770793 -135557554 + AT_rich Low_complexity Low_complexity 1 23 0 424 351 48 45 chr4 66771152 66771505 -135556842 + L2 LINE L2 2622 2975 -339 180 263 0 0 chr4 66771642 66771718 -135556629 + (TA)n Simple_repeat Simple_repeat 1 76 0 344 347 49 21 chr4 66771834 66771978 -135556369 + L2 LINE L2 3125 3272 0 4014 180 39 58 chr4 66772358 66772703 -135555644 - L1MC1 LINE L1 0 6344 5994 3485 75 0 0 chr4 66772703 66773155 -135555192 + L1PA8 LINE L1 5707 6158 -14 4014 180 39 58 chr4 66773155 66774002 -135554345 - L1MC1 LINE L1 -350 5994 5130 22 0 0 0 chr4 66774412 66774434 -135553913 + AT_rich Low_complexity Low_complexity 1 22 0 260 211 0 0 chr4 66775323 66775375 -135552972 - MLT2F LTR ERVL 0 663 612 213 132 0 0 chr4 66775393 66775431 -135552916 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 1567 261 174 8 chr4 66775431 66775949 -135552398 - MLT2F LTR ERVL -54 609 6 241 250 0 0 chr4 66776335 66776383 -135551964 + (CA)n Simple_repeat Simple_repeat 1 48 0 338 273 78 92 chr4 66776536 66776818 -135551529 - L1MC4 LINE L1 -247 7795 7518 729 178 7 7 chr4 66776819 66776954 -135551393 + FLAM_C SINE Alu 1 135 -8 25 65 0 0 chr4 66777957 66778003 -135550344 + AT_rich Low_complexity Low_complexity 1 46 0 346 308 16 44 chr4 66778007 66778171 -135550176 - L1M4 LINE L1 -1997 4149 3989 2458 75 0 0 chr4 66778171 66778477 -135549870 - AluY SINE Alu -5 306 1 346 308 16 44 chr4 66778477 66778494 -135549853 - L1M4 LINE L1 -2157 3989 3973 30 59 0 0 chr4 66778521 66778572 -135549775 + AT_rich Low_complexity Low_complexity 1 51 0 4222 211 101 111 chr4 66778946 66780698 -135547649 + MER52A LTR ERV1 1 1735 -20 381 234 108 70 chr4 66781601 66781722 -135546625 + L1MEd LINE L1 502 636 -5483 5746 121 13 3 chr4 66781722 66782703 -135545644 + L1PA15 LINE L1 5171 6160 -5 381 234 108 70 chr4 66782703 66782795 -135545552 + L1MEd LINE L1 636 723 -5396 746 342 106 27 chr4 66783726 66784349 -135543998 + L2 LINE L2 1508 2179 -1135 244 213 8 8 chr4 66784711 66784834 -135543513 + GA-rich Low_complexity Low_complexity 1 123 0 1332 256 31 22 chr4 66785595 66785955 -135542392 - MLT1A1 LTR MaLR 0 365 3 325 352 182 11 chr4 66786571 66786835 -135541512 + MLT1J LTR MaLR 154 462 -49 49 18 0 0 chr4 66788859 66788915 -135539432 + AT_rich Low_complexity Low_complexity 1 56 0 26 30 0 0 chr4 66789038 66789071 -135539276 + AT_rich Low_complexity Low_complexity 1 33 0 1155 90 6 6 chr4 66790141 66790307 -135538040 - L1PA8A LINE L1 0 6131 5966 419 155 0 48 chr4 66790522 66790606 -135537741 + MADE1 DNA Mariner 1 80 0 255 61 0 0 chr4 66791609 66791642 -135536705 + (CA)n Simple_repeat Simple_repeat 2 34 0 30 0 0 0 chr4 66791737 66791767 -135536580 + AT_rich Low_complexity Low_complexity 1 30 0 313 176 12 12 chr4 66791885 66791970 -135536377 + CT-rich Low_complexity Low_complexity 2 86 0 383 300 18 18 chr4 66792135 66792305 -135536042 - L1ME LINE L1 -351 5770 5601 22 0 0 0 chr4 66792469 66792491 -135535856 + AT_rich Low_complexity Low_complexity 1 22 0 35 0 0 0 chr4 66792577 66792612 -135535735 + AT_rich Low_complexity Low_complexity 1 35 0 606 252 62 178 chr4 66792846 66793682 -135534665 + L2 LINE L2 1426 2164 -1150 320 299 36 15 chr4 66793690 66793827 -135534520 - L1ME LINE L1 -1929 4217 4078 21 36 0 0 chr4 66795947 66795975 -135532372 + AT_rich Low_complexity Low_complexity 1 28 0 768 303 24 122 chr4 66796093 66796975 -135531372 + L2 LINE L2 2509 3313 0 254 365 77 45 chr4 66796957 66797113 -135531234 - L2 LINE L2 -1 3271 3111 * 341 314 59 65 chr4 66797475 66797644 -135530703 + MIR SINE MIR 4 171 -91 4849 152 47 40 chr4 66799169 66800160 -135528187 - Tigger3b DNA MER2_type -1 1230 233 741 152 119 99 chr4 66800162 66800405 -135527942 - MER2 DNA MER2_type -3 342 95 927 205 124 5 chr4 66800453 66800663 -135527684 - Tigger3b DNA MER2_type -995 236 2 731 264 25 0 chr4 66800805 66800964 -135527383 + MER45A DNA AcHobo 5 167 -11 960 244 153 66 chr4 66801100 66801603 -135526744 - MLT1H1 LTR MaLR -2 553 7 313 279 16 0 chr4 66801716 66801838 -135526509 + (TA)n Simple_repeat Simple_repeat 1 124 0 23 68 0 0 chr4 66802352 66802396 -135525951 + AT_rich Low_complexity Low_complexity 1 44 0 29 0 0 0 chr4 66802589 66802618 -135525729 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 66802860 66802882 -135525465 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 66802893 66802915 -135525432 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr4 66803231 66803256 -135525091 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1532 183 68 22 chr4 66804165 66804520 -135523827 - THE1C LTR MaLR -4 371 1 260 333 69 20 chr4 66806111 66806357 -135521990 - L1ME LINE L1 -348 5773 5516 29 70 0 0 chr4 66808270 66808327 -135520020 + AT_rich Low_complexity Low_complexity 1 57 0 774 281 29 5 chr4 66808825 66809035 -135519312 + MIR SINE MIR 1 215 -47 188 209 251 107 chr4 66809367 66809554 -135518793 - MIR SINE MIR -18 244 31 330 302 84 50 chr4 66809738 66809940 -135518407 + MIR SINE MIR 52 260 -2 231 152 0 0 chr4 66810427 66810473 -135517874 + (CACAT)n Simple_repeat Simple_repeat 2 47 0 21 0 0 0 chr4 66810583 66810604 -135517743 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 66810732 66810762 -135517585 + AT_rich Low_complexity Low_complexity 1 30 0 273 57 0 0 chr4 66811085 66811120 -135517227 + (TG)n Simple_repeat Simple_repeat 2 36 0 197 24 95 0 chr4 66811762 66811804 -135516543 + (TTA)n Simple_repeat Simple_repeat 3 48 0 284 345 43 29 chr4 66812013 66812152 -135516195 - MIR SINE MIR -55 207 67 432 355 50 34 chr4 66814281 66814720 -135513627 - L2 LINE L2 -1129 2185 1740 180 0 0 0 chr4 66814754 66814774 -135513573 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2140 140 22 22 chr4 66816777 66817141 -135511206 + THE1B LTR MaLR 1 364 0 11395 103 3 2 chr4 66817141 66818719 -135509628 + THE1B-int LTR MaLR 1 1580 0 2144 145 16 22 chr4 66818719 66819085 -135509262 + THE1B LTR MaLR 1 364 0 2420 71 3 10 chr4 66820212 66820522 -135507825 - AluY SINE Alu -3 308 1 4984 176 20 23 chr4 66820606 66821733 -135506614 - L1PA16 LINE L1 -5 6161 5051 8201 52 1 0 chr4 66822665 66823630 -135504717 + LTR5 LTR ERVK 1 966 -3 718 292 76 8 chr4 66823779 66824015 -135504332 + MIR SINE MIR 3 254 -8 262 275 12 25 chr4 66824475 66824555 -135503792 + T-rich Low_complexity Low_complexity 5 83 0 8425 141 1 4 chr4 66824710 66826061 -135502286 - L1PA8A LINE L1 -1020 5126 3780 6157 89 6 5 chr4 66826057 66827037 -135501310 + L1PA8A LINE L1 5123 6102 -29 * 1300 181 41 7 chr4 66827123 66827416 -135500931 + L1MA7 LINE L1 5983 6285 -6 21 0 0 0 chr4 66827890 66827911 -135500436 + AT_rich Low_complexity Low_complexity 1 21 0 346 311 114 42 chr4 66828164 66828710 -135499637 - L1MC4a LINE L1 -1909 5899 5315 21 0 0 0 chr4 66828845 66828866 -135499481 + AT_rich Low_complexity Low_complexity 1 21 0 326 375 22 14 chr4 66830935 66831287 -135497060 - L1MC5 LINE L1 -475 7495 7286 501 276 54 5 chr4 66831302 66831505 -135496842 - L1MC5 LINE L1 -747 7214 7002 2391 158 16 16 chr4 66831725 66832155 -135496192 + L1PA16 LINE L1 5728 6157 -9 262 208 0 0 chr4 66832513 66832561 -135495786 + FAM SINE Alu 120 167 -12 385 320 97 41 chr4 66832734 66833075 -135495272 + L1ME LINE L1 3681 4040 -2106 738 295 101 62 chr4 66833173 66833806 -135494541 + L1ME LINE L1 4187 4844 -1302 983 325 75 20 chr4 66834017 66834527 -135493820 - MLT1H LTR MaLR -2 547 10 306 308 65 23 chr4 66834771 66834985 -135493362 + L1ME LINE L1 5315 5537 -629 380 179 9 0 chr4 66835307 66835387 -135492960 + L1MA4A LINE L1 6212 6293 -7 418 291 43 0 chr4 66835673 66835814 -135492533 + LTR16A LTR ERVL 304 450 0 216 228 0 18 chr4 66836287 66836344 -135492003 + (TA)n Simple_repeat Simple_repeat 1 56 0 229 248 83 101 chr4 66836737 66836779 -135491568 - L2 LINE L2 0 3313 3272 1420 195 30 36 chr4 66836779 66837082 -135491265 - AluJb SINE Alu -11 301 1 229 248 83 101 chr4 66837082 66837148 -135491199 - L2 LINE L2 -41 3272 3207 23 0 0 0 chr4 66837165 66837188 -135491159 + AT_rich Low_complexity Low_complexity 1 23 0 7000 129 14 11 chr4 66837321 66839288 -135489059 + L1PA10 LINE L1 4147 6116 -52 911 311 90 40 chr4 66839297 66839867 -135488480 - L2 LINE L2 -239 3074 2475 258 56 0 0 chr4 66839902 66839938 -135488409 + (TG)n Simple_repeat Simple_repeat 2 37 0 388 233 70 47 chr4 66839949 66840078 -135488269 + L2 LINE L2 3179 3310 -3 380 307 43 12 chr4 66840077 66840240 -135488107 - L2 LINE L2 -928 2386 2219 * 242 330 0 21 chr4 66840245 66840342 -135488005 + MER5B DNA MER1_type 2 96 -82 350 291 172 7 chr4 66840476 66840627 -135487720 + MER5B DNA MER1_type 3 178 0 * 1323 311 112 27 chr4 66840627 66841444 -135486903 - L2 LINE L2 -1135 2179 1289 3442 132 62 0 chr4 66842007 66842574 -135485773 - LTR43 LTR ERV1 0 602 1 59 74 0 0 chr4 66843162 66843284 -135485063 + AT_rich Low_complexity Low_complexity 1 122 0 22 0 0 0 chr4 66843315 66843337 -135485010 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr4 66843549 66843578 -135484769 + AT_rich Low_complexity Low_complexity 1 29 0 1585 138 80 47 chr4 66843721 66844082 -135484265 - L1MA5 LINE L1 0 6300 5928 1390 165 51 97 chr4 66844753 66845146 -135483201 + THE1C LTR MaLR 1 375 0 23 86 0 0 chr4 66846563 66846621 -135481726 + AT_rich Low_complexity Low_complexity 1 58 0 22 35 0 0 chr4 66846867 66846896 -135481451 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 66846959 66846982 -135481365 + AT_rich Low_complexity Low_complexity 1 23 0 1670 239 43 62 chr4 66847431 66847557 -135480790 - L1ME2 LINE L1 -197 5967 5840 1841 168 136 8 chr4 66847557 66847933 -135480414 - MSTA LTR MaLR 0 428 5 1670 239 43 62 chr4 66847933 66848502 -135479845 - L1ME2 LINE L1 -324 5840 5285 952 214 5 28 chr4 66848609 66848824 -135479523 + AluJb SINE Alu 86 295 -17 332 217 14 0 chr4 66849378 66849447 -135478900 + Tigger2 DNA MER2_type 1 70 -2648 1805 273 16 14 chr4 66849680 66850182 -135478165 - MLT1D LTR MaLR -2 503 1 253 291 12 12 chr4 66850241 66850327 -135478020 - MER90 LTR ERV1 -200 414 329 26 50 0 0 chr4 66852417 66852457 -135475890 + AT_rich Low_complexity Low_complexity 1 40 0 4890 127 36 5 chr4 66852671 66853426 -135474921 + LTR17 LTR ERV1 1 778 -2 5004 105 0 24 chr4 66853430 66854153 -135474194 + HERV17 LTR ERV1 4 709 -7917 5394 83 46 2 chr4 66854421 66855333 -135473014 + HERV17 LTR ERV1 724 1720 -5176 258 291 116 0 chr4 66855335 66855358 -135472989 - LTR8 LTR ERV1 -438 253 234 4978 88 28 6 chr4 66855358 66856064 -135472283 + LTR30 LTR ERV1 1 722 0 258 291 116 0 chr4 66856064 66856126 -135472221 - LTR8 LTR ERV1 -457 234 158 3798 53 2 6 chr4 66856131 66856601 -135471746 + HERV17 LTR ERV1 1537 2004 -6622 * 13159 62 8 2 chr4 66856595 66858260 -135470087 + HERV17 LTR ERV1 2574 4248 -4378 1062 56 7 7 chr4 66858230 66858372 -135469975 + HERV17 LTR ERV1 7404 7545 -1081 * 2255 82 0 0 chr4 66858365 66858657 -135469690 + HERV17 LTR ERV1 8335 8626 0 4906 124 34 5 chr4 66858657 66859415 -135468932 + LTR17 LTR ERV1 1 780 0 2003 122 0 7 chr4 66860219 66860507 -135467840 - AluSg SINE Alu -21 289 4 4456 122 33 0 chr4 66860762 66861461 -135466886 - LTR30 LTR ERV1 0 722 1 2249 118 0 0 chr4 66861558 66861863 -135466484 + AluSg SINE Alu 1 305 -5 401 229 0 57 chr4 66863298 66863403 -135464944 - MER94 DNA DNA 0 134 36 23 33 0 0 chr4 66865022 66865052 -135463295 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 66865550 66865571 -135462776 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 66866040 66866061 -135462286 + AT_rich Low_complexity Low_complexity 1 21 0 1867 130 0 40 chr4 66866061 66866361 -135461986 - AluSx SINE Alu -24 288 1 314 237 99 23 chr4 66866565 66866696 -135461651 - L1MC4 LINE L1 -456 7586 7446 29 0 0 0 chr4 66866697 66866726 -135461621 + AT_rich Low_complexity Low_complexity 1 29 0 421 294 28 39 chr4 66866726 66866906 -135461441 - L1MC4 LINE L1 -589 7453 7276 642 319 81 19 chr4 66866917 66867549 -135460798 - L1MC4 LINE L1 -869 7173 6414 319 293 168 55 chr4 66867716 66867988 -135460359 - L1MC4a LINE L1 -1547 6261 5944 2036 127 0 0 chr4 66867988 66868264 -135460083 - AluSc SINE Alu -17 292 17 319 293 168 55 chr4 66868264 66868319 -135460028 - L1MC4a LINE L1 -1864 5944 5897 315 244 0 0 chr4 66868325 66868403 -135459944 - L1MC4a LINE L1 -1978 5830 5753 1834 238 101 39 chr4 66868404 66868917 -135459430 - MER52A LTR ERV1 0 1755 1211 1219 219 55 83 chr4 66868895 66869586 -135458761 - MER52A LTR ERV1 -304 1349 553 * 1706 156 51 18 chr4 66869664 66869940 -135458407 + AluSg SINE Alu 1 285 -25 264 111 0 0 chr4 66870038 66870083 -135458264 + (TG)n Simple_repeat Simple_repeat 2 46 0 233 378 52 0 chr4 66870103 66870238 -135458109 - L1MC4a LINE L1 -2162 5646 5505 889 242 83 66 chr4 66870284 66870693 -135457654 + L1MC4a LINE L1 5306 5721 -445 27 0 0 0 chr4 66870702 66870729 -135457618 + AT_rich Low_complexity Low_complexity 1 27 0 2253 270 155 31 chr4 66870737 66872273 -135456074 + L1MC4a LINE L1 5982 6147 -19 1235 190 33 48 chr4 66872299 66872631 -135455716 - L1MB8 LINE L1 -1 6177 5851 2965 239 44 9 chr4 66872643 66873548 -135454799 - L1MC4a LINE L1 -709 5469 4536 313 256 60 51 chr4 66873653 66873770 -135454577 + Charlie5 DNA MER1_type 1 118 -2494 407 205 0 0 chr4 66873783 66873861 -135454486 + Charlie5 DNA MER1_type 2237 2314 -298 2121 115 3 10 chr4 66874137 66874441 -135453906 - AluSg SINE Alu -8 302 1 21 0 0 0 chr4 66874553 66874574 -135453773 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr4 66875691 66875727 -135452620 + AT_rich Low_complexity Low_complexity 1 36 0 7350 37 0 0 chr4 66875727 66877284 -135451063 - L1PA4 LINE L1 0 6155 4592 768 163 17 6 chr4 66877594 66877766 -135450581 + GA-rich Low_complexity Low_complexity 3 176 0 352 292 33 8 chr4 66878144 66878264 -135450083 + LTR16A LTR ERVL 43 165 -285 364 303 154 21 chr4 66878265 66878499 -135449848 + L1ME3 LINE L1 2287 2551 -3595 282 299 90 30 chr4 66878649 66879084 -135449263 + L1ME3 LINE L1 2725 3185 -2961 8002 231 112 12 chr4 66879161 66882182 -135446165 + L1MA5 LINE L1 2335 5857 -443 336 83 0 0 chr4 66882182 66882230 -135446117 + (CA)n Simple_repeat Simple_repeat 2 49 0 8002 231 112 12 chr4 66882230 66882724 -135445623 + L1MA5 LINE L1 5857 6300 0 761 289 105 30 chr4 66882739 66883234 -135445113 + L1ME3 LINE L1 3510 4041 -2105 274 293 85 33 chr4 66883312 66883582 -135444765 + L1ME3 LINE L1 4781 5064 -1082 267 232 0 14 chr4 66883703 66883772 -135444575 + (TA)n Simple_repeat Simple_repeat 2 69 0 1739 259 85 41 chr4 66883784 66884579 -135443768 + L1ME3 LINE L1 5238 6057 -105 28 0 0 0 chr4 66885530 66885558 -135442789 + AT_rich Low_complexity Low_complexity 1 28 0 1930 141 3 0 chr4 66885780 66886070 -135442277 + AluSx SINE Alu 4 294 -18 338 333 66 62 chr4 66886490 66886763 -135441584 + L2 LINE L2 2603 2876 -438 21 82 0 0 chr4 66887301 66887350 -135440997 + AT_rich Low_complexity Low_complexity 1 49 0 516 336 180 38 chr4 66888199 66888899 -135439448 - L2 LINE L2 -2 3311 2532 1214 174 94 149 chr4 66888899 66889505 -135438842 + LTR49 LTR ERV1 5 563 -32 232 356 11 0 chr4 66889534 66889624 -135438723 - L2 LINE L2 -796 2518 2428 1863 184 67 0 chr4 66889832 66890208 -135438139 + MER57A LTR ERV1 1 401 -2 3817 146 27 15 chr4 66890209 66890978 -135437369 + MER57A-int LTR ERV1 1 840 -6697 239 186 34 34 chr4 66891225 66891284 -135437063 + MER34C LTR ERV1 158 216 -369 354 201 77 22 chr4 66891493 66891601 -135436746 + MER57A-int LTR ERV1 1096 1190 -3681 264 228 33 43 chr4 66891606 66891698 -135436649 + MER57A-int LTR ERV1 3413 3503 -4034 465 230 78 32 chr4 66892119 66892485 -135435862 + MER57A-int LTR ERV1 1710 3328 -2618 * 10009 130 10 4 chr4 66892476 66894330 -135434017 + MER57A-int LTR ERV1 5245 7146 -391 659 155 26 9 chr4 66894330 66894446 -135433901 + LTR54B LTR ERV1 3 120 -378 1705 134 0 32 chr4 66894446 66894729 -135433618 + MER57A-int LTR ERV1 7264 7537 0 1499 183 17 30 chr4 66894729 66895024 -135433323 + MER57A LTR ERV1 1 291 -112 921 153 58 0 chr4 66895024 66895214 -135433133 - L1P LINE L1 -808 5338 5138 6549 192 26 50 chr4 66895214 66896975 -135431372 + L1MA3 LINE L1 3919 5636 -532 535 151 0 11 chr4 66896981 66897074 -135431273 + FRAM SINE Alu 77 168 -8 2264 104 6 3 chr4 66897074 66897409 -135430938 + L1MA3 LINE L1 5636 5971 -334 209 316 18 0 chr4 66897431 66897488 -135430859 + L2 LINE L2 3256 3313 0 452 309 184 9 chr4 66898815 66899343 -135429004 + HAL1 LINE L1 1475 2094 -413 1438 223 52 52 chr4 66899351 66899692 -135428655 + MLT1C LTR MaLR 5 348 -119 2398 63 3 0 chr4 66899692 66899994 -135428353 - AluY SINE Alu -8 303 1 1438 223 52 52 chr4 66899994 66900115 -135428232 + MLT1C LTR MaLR 347 467 0 240 157 71 57 chr4 66901208 66901278 -135427069 + MLT1J2 LTR MaLR 372 442 -8 288 53 0 0 chr4 66901910 66901948 -135426399 + (TG)n Simple_repeat Simple_repeat 1 38 0 209 298 67 19 chr4 66902345 66902449 -135425898 + L2 LINE L2 2341 2449 -865 2256 203 38 7 chr4 66902484 66902932 -135425415 - MLT1C LTR MaLR -5 462 1 206 298 199 0 chr4 66902958 66903089 -135425258 + L2 LINE L2 2491 2647 -667 185 396 42 31 chr4 66903387 66903483 -135424864 + L2 LINE L2 2999 3095 -177 24 0 0 0 chr4 66904924 66904948 -135423399 + AT_rich Low_complexity Low_complexity 1 24 0 387 75 0 0 chr4 66905226 66905279 -135423068 + L1P4 LINE L1 5720 5772 -402 867 209 114 5 chr4 66905379 66905580 -135422767 - L1M1 LINE L1 -5376 2189 1967 2796 82 5 0 chr4 66905681 66906069 -135422278 + L1PA13 LINE L1 5769 6158 -5 189 0 0 0 chr4 66906069 66906090 -135422257 + (CA)n Simple_repeat Simple_repeat 2 22 0 6613 97 1 9 chr4 66907568 66908736 -135419611 - L1PA3 LINE L1 -5 6150 4993 * 17642 27 1 0 chr4 66908735 66910846 -135417501 + L1P LINE L1 2918 5030 -1116 304 300 0 0 chr4 66910846 66910936 -135417411 + LTR33 LTR ERVL 425 514 -7 1968 146 0 3 chr4 66910972 66911267 -135417080 - AluSx SINE Alu -18 294 1 21 0 0 0 chr4 66911842 66911863 -135416484 + AT_rich Low_complexity Low_complexity 1 21 0 429 181 0 0 chr4 66911919 66912013 -135416334 + (TG)n Simple_repeat Simple_repeat 1 94 0 388 282 38 100 chr4 66912243 66912562 -135415785 - L1M4 LINE L1 -1110 5036 4738 26 0 0 0 chr4 66913438 66913464 -135414883 + AT_rich Low_complexity Low_complexity 1 26 0 881 341 41 21 chr4 66913702 66914283 -135414064 - HERV16 LTR ERVL -2037 3448 2856 2851 253 96 15 chr4 66914322 66914971 -135413376 + L1M4 LINE L1 2713 3308 -2838 1847 211 56 50 chr4 66914971 66915473 -135412874 + MLT1D LTR MaLR 1 505 0 2851 253 96 15 chr4 66915473 66916146 -135412201 + L1M4 LINE L1 3308 4142 -2004 22 35 0 0 chr4 66916175 66916204 -135412143 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr4 66916279 66916304 -135412043 + AT_rich Low_complexity Low_complexity 1 25 0 2550 42 7 3 chr4 66917186 66917494 -135410853 - AluY SINE Alu 0 311 3 24 0 0 0 chr4 66918005 66918029 -135410318 + AT_rich Low_complexity Low_complexity 1 24 0 277 388 105 6 chr4 66918285 66918638 -135409709 - HERV16 LTR ERVL -3624 1372 985 282 234 39 0 chr4 66919162 66919239 -135409108 + MIR SINE MIR 102 181 -81 22 56 0 0 chr4 66919483 66919519 -135408828 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr4 66919616 66919650 -135408697 + AT_rich Low_complexity Low_complexity 1 34 0 22 80 0 0 chr4 66919724 66919774 -135408573 + AT_rich Low_complexity Low_complexity 1 50 0 21 57 0 0 chr4 66920132 66920167 -135408180 + AT_rich Low_complexity Low_complexity 1 35 0 3238 123 8 29 chr4 66920167 66920688 -135407659 - MER75 DNA T2_type 0 514 5 988 178 130 114 chr4 66920761 66921215 -135407132 - MER4C LTR ERV1 -4 461 1 6073 204 29 67 chr4 66921679 66923437 -135404910 - L1MC3 LINE L1 -17 7768 6077 3384 266 62 45 chr4 66923430 66924215 -135404132 - L1MEc LINE L1 -2195 4231 3461 * 1919 133 69 28 chr4 66924215 66924575 -135403772 - THE1C LTR MaLR 0 375 1 8948 122 40 60 chr4 66924575 66926187 -135402160 - THE1C-int LTR MaLR 0 1580 1 1973 129 61 28 chr4 66926187 66926550 -135401797 - THE1C LTR MaLR 0 375 1 3384 266 62 45 chr4 66926550 66927177 -135401170 - L1MEc LINE L1 -2965 3461 2846 1658 191 0 0 chr4 66927177 66927454 -135400893 - AluSx SINE Alu -21 291 15 3384 266 62 45 chr4 66927454 66927740 -135400607 - L1MEc LINE L1 -3580 2846 2566 1761 167 28 7 chr4 66927740 66928028 -135400319 + AluSx SINE Alu 1 294 -18 3384 266 62 45 chr4 66928028 66928476 -135399871 - L1MEc LINE L1 -3860 2566 2088 479 189 131 74 chr4 66928478 66928624 -135399723 - MER76 LTR ERV 0 688 529 2408 87 0 3 chr4 66928624 66928934 -135399413 - AluSx SINE Alu -3 309 1 479 189 131 74 chr4 66928934 66928962 -135399385 - MER76 LTR ERV -159 529 504 748 209 79 67 chr4 66929000 66929372 -135398975 - MLT1A1 LTR MaLR 0 365 26 3293 245 82 15 chr4 66929402 66930207 -135398140 - MLT1A1-int LTR MaLR -19 1716 858 7742 161 92 71 chr4 66930226 66932331 -135396016 - L1MCa LINE L1 -4116 2310 21 1329 191 101 83 chr4 66932438 66932836 -135395511 - LTR8A LTR ERV1 0 727 323 370 113 0 32 chr4 66932831 66932893 -135395454 - LTR8A LTR ERV1 -667 60 1 * 1797 262 116 43 chr4 66932894 66933235 -135395112 - L1MEc LINE L1 -5286 1140 825 1867 129 7 52 chr4 66933235 66933545 -135394802 + AluSq SINE Alu 1 296 -17 1797 262 116 43 chr4 66933545 66934239 -135394108 - L1MEc LINE L1 -5601 825 30 21 71 0 0 chr4 66934245 66934287 -135394060 + AT_rich Low_complexity Low_complexity 1 42 0 642 99 0 0 chr4 66934503 66934594 -135393753 + AluYa5 SINE Alu 1 91 -220 4596 89 62 129 chr4 66934594 66935479 -135392868 + LTR12 LTR ERV1 1 826 0 59625 93 15 11 chr4 66935503 66943822 -135384525 + HERV9 LTR ERV1 45 8399 0 4412 115 101 42 chr4 66943822 66944602 -135383745 + LTR12 LTR ERV1 1 826 0 1370 107 5 20 chr4 66944602 66944840 -135383507 + AluYa5 SINE Alu 88 322 0 253 130 0 37 chr4 66944886 66944940 -135383407 + L1MC4 LINE L1 6652 6703 -1339 1910 159 3 10 chr4 66944947 66945242 -135383105 - AluSx SINE Alu -19 293 1 25 0 0 0 chr4 66945322 66945347 -135383000 + AT_rich Low_complexity Low_complexity 1 25 0 1109 167 26 13 chr4 66945400 66945627 -135382720 - L1MB2 LINE L1 -7 6164 5935 1383 198 0 4 chr4 66945695 66945958 -135382389 - L1MB2 LINE L1 -239 5932 5671 184 418 38 0 chr4 66946576 66946655 -135381692 + L2 LINE L2 3139 3220 -52 898 262 59 25 chr4 66947107 66947428 -135380919 + L1MC1 LINE L1 3521 3852 -2294 4924 218 20 6 chr4 66947431 66948670 -135379677 - L1 LINE L1 -765 5381 4125 2774 181 36 2 chr4 66948674 66949225 -135379122 + L1PA16 LINE L1 5592 6161 -5 4080 241 45 30 chr4 66949229 66951685 -135376662 + L1MC1 LINE L1 3842 6333 0 24 0 0 0 chr4 66952408 66952432 -135375915 + AT_rich Low_complexity Low_complexity 1 24 0 30 27 0 0 chr4 66952540 66952577 -135375770 + AT_rich Low_complexity Low_complexity 1 37 0 580 193 0 59 chr4 66952577 66952712 -135375635 + FLAM_A SINE Alu 6 132 -10 1880 125 21 14 chr4 66953343 66953631 -135374716 + AluSx SINE Alu 1 290 -22 27 0 0 0 chr4 66953631 66953658 -135374689 + AT_rich Low_complexity Low_complexity 1 27 0 32 95 0 0 chr4 66953903 66953998 -135374349 + AT_rich Low_complexity Low_complexity 1 95 0 400 320 9 27 chr4 66954107 66954326 -135374021 - MER58C DNA MER1_type 0 215 1 726 278 54 5 chr4 66954468 66954673 -135373674 + L1MA5 LINE L1 2 216 -5739 * 1481 192 28 125 chr4 66954666 66955208 -135373139 + L1MA5 LINE L1 3090 3564 -2470 752 183 24 12 chr4 66955208 66955377 -135372970 + L1MA10 LINE L1 6161 6331 -3 1481 192 28 125 chr4 66955377 66955468 -135372879 + L1MA5 LINE L1 3564 3662 -2372 45 34 0 0 chr4 66955468 66955527 -135372820 + AT_rich Low_complexity Low_complexity 1 59 0 882 184 0 0 chr4 66955542 66955683 -135372664 - AluJo SINE Alu -171 141 1 3996 193 26 19 chr4 66955683 66956601 -135371746 + L1MA5 LINE L1 3650 4574 -1460 5518 147 32 0 chr4 66956622 66958040 -135370307 - L1PA14 LINE L1 0 6161 4701 * 8814 150 22 24 chr4 66958026 66959572 -135368775 - L1PA14 LINE L1 -4592 1554 12 285 222 102 46 chr4 66960395 66960503 -135367844 + L2 LINE L2 3185 3298 -15 4316 185 41 21 chr4 66961110 66961982 -135366365 + L1M4c LINE L1 15 904 -5480 3830 223 3 26 chr4 66961984 66962155 -135366192 + L1M2a LINE L1 6 179 -6989 2040 173 34 3 chr4 66962155 66962508 -135365839 + THE1B LTR MaLR 1 364 0 3830 223 3 26 chr4 66962508 66963117 -135365230 + L1M2a LINE L1 179 914 -6254 257 278 11 126 chr4 66963091 66963282 -135365065 + L1M2a LINE L1 645 813 -6355 * 3843 155 28 65 chr4 66963332 66964242 -135364105 + L1MA5 LINE L1 5093 5970 -218 5650 264 39 9 chr4 66964259 66964487 -135363860 - L1 LINE L1 -1971 4175 3955 2061 216 49 45 chr4 66964487 66965039 -135363308 - MLT2B3 LTR ERVL 0 554 1 5650 264 39 9 chr4 66965039 66966727 -135361620 - L1 LINE L1 -2191 3955 2202 3125 272 71 36 chr4 66966988 66968327 -135360020 - L1PA13 LINE L1 -3485 3312 1879 867 139 0 29 chr4 66968327 66968464 -135359883 - FLAM_C SINE Alu 0 133 1 3125 272 71 36 chr4 66968464 66968805 -135359542 - L1PA13 LINE L1 -4918 1879 1551 542 356 23 18 chr4 66968834 66969053 -135359294 - L1PA13 LINE L1 -6567 220 1 612 253 18 52 chr4 66969065 66969294 -135359053 - L1 LINE L1 -1399 4747 4527 22 35 0 0 chr4 66969333 66969362 -135358985 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 66970633 66970654 -135357693 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 66971328 66971352 -135356995 + AT_rich Low_complexity Low_complexity 1 24 0 826 292 118 33 chr4 66971558 66971955 -135356392 - LTR16A1 LTR ERVL -14 443 13 1865 188 58 8 chr4 66972555 66972917 -135355430 - MLT2B3 LTR ERVL -174 380 1 3291 210 31 11 chr4 66973085 66973881 -135354466 - L1MB5 LINE L1 0 6174 5363 904 220 73 118 chr4 66974305 66974557 -135353790 - MLT1A1 LTR MaLR 0 365 134 1712 147 41 57 chr4 66974557 66974924 -135353423 - THE1B LTR MaLR -3 361 1 904 220 73 118 chr4 66974924 66975053 -135353294 - MLT1A1 LTR MaLR -231 134 1 1470 204 3 7 chr4 66975338 66975627 -135352720 + AluJo SINE Alu 1 288 -24 207 263 69 119 chr4 66976056 66976169 -135352178 - L2 LINE L2 -4 3309 3205 729 234 69 64 chr4 66976169 66976387 -135351960 + MER20 DNA MER1_type 1 219 0 207 263 69 119 chr4 66976387 66976433 -135351914 - L2 LINE L2 -108 3205 3158 527 348 63 7 chr4 66976502 66976789 -135351558 - L2 LINE L2 -904 2410 2108 583 105 12 0 chr4 66977947 66978033 -135350314 - L1M2 LINE L1 -533 5767 5681 180 360 11 34 chr4 66978038 66978127 -135350220 - L2 LINE L2 0 3272 3186 244 345 90 21 chr4 66978467 66978612 -135349735 - L2 LINE L2 0 3313 3159 1789 174 135 0 chr4 66978970 66979011 -135349336 - MLT2D LTR ERVL 0 414 380 207 0 0 0 chr4 66979011 66979034 -135349313 + (TG)n Simple_repeat Simple_repeat 1 23 0 * 378 0 0 0 chr4 66979033 66979075 -135349272 + (GA)n Simple_repeat Simple_repeat 1 42 0 1789 174 135 0 chr4 66979034 66979396 -135348951 - MLT2D LTR ERVL -34 380 3 2157 177 47 9 chr4 66979491 66979915 -135348432 + MER39 LTR ERV1 259 698 -9 9326 64 1 6 chr4 66980047 66981227 -135347120 - L1P LINE L1 -4962 1184 11 30839 40 8 0 chr4 66981228 66985864 -135342483 + L1PA3 LINE L1 1509 6179 0 448 284 86 25 chr4 66986138 66986300 -135342047 - MLT1G1 LTR MaLR -423 172 1 257 264 78 30 chr4 66986692 66986859 -135341488 + L1MC1 LINE L1 5292 5466 -2342 326 267 127 7 chr4 66986867 66987017 -135341330 + L1MC1 LINE L1 5506 5673 -2135 235 296 111 0 chr4 66987582 66987690 -135340657 + MIR SINE MIR 69 188 -74 234 250 0 0 chr4 66988184 66988256 -135340091 + (TA)n Simple_repeat Simple_repeat 1 72 0 2792 107 6 97 chr4 66988667 66989173 -135339174 + LTR46 LTR ERV1 1 460 0 1578 211 34 14 chr4 66989336 66989692 -135338655 - Tigger1 DNA MER2_type 0 2418 2056 2786 266 72 17 chr4 66989695 66990477 -135337870 + L1M1 LINE L1 18 842 -6723 515 250 66 20 chr4 66990499 66990651 -135337696 + L1M1 LINE L1 1670 1828 -5737 1524 188 54 77 chr4 66990751 66991053 -135337294 + L1M1 LINE L1 2420 2727 -4838 2003 127 0 29 chr4 66991053 66991367 -135336980 + AluSg1 SINE Alu 1 305 -4 1524 188 54 77 chr4 66991367 66991585 -135336762 + L1M1 LINE L1 2727 2928 -4637 2037 145 48 14 chr4 66991585 66991937 -135336410 + THE1B LTR MaLR 1 364 0 1524 188 54 77 chr4 66991937 66991990 -135336357 + L1M1 LINE L1 2928 2981 -4584 1938 103 0 0 chr4 66992131 66992413 -135335934 + AluY SINE Alu 29 310 0 1756 79 0 0 chr4 66993005 66993232 -135335115 + AluYb8 SINE Alu 92 318 0 3367 101 8 10 chr4 66993412 66993899 -135334448 + L1PA8 LINE L1 5682 6167 -5 487 141 29 118 chr4 66993899 66993969 -135334378 + L1M1 LINE L1 3676 3751 -3814 2093 128 0 0 chr4 66993969 66994259 -135334088 + AluSc SINE Alu 1 290 -19 487 141 29 118 chr4 66994259 66994358 -135333989 + L1M1 LINE L1 3751 3830 -3735 3333 159 2 0 chr4 66994358 66994913 -135333434 + Tigger1 DNA MER2_type 1523 2078 -340 4331 189 68 1 chr4 66994957 66995883 -135332464 - L1MA4 LINE L1 -24 6276 5289 1156 198 52 4 chr4 66995887 66996139 -135332208 - Tigger1 DNA MER2_type -2154 264 1 896 222 0 0 chr4 66996141 66996321 -135332026 + L1MC1 LINE L1 5924 6103 -230 572 165 21 0 chr4 66996321 66996418 -135331929 - Tigger1 DNA MER2_type -2319 99 1 313 223 112 58 chr4 66997035 66997223 -135331124 - MLT1L LTR MaLR -385 230 33 427 275 17 8 chr4 66997350 66997470 -135330877 + LTR40a LTR ERVL 385 505 -14 3914 138 55 12 chr4 66997581 66998240 -135330107 - L1PA16 LINE L1 -86 6080 5394 7641 68 2 7 chr4 66998242 67000053 -135328294 - L1PA6 LINE L1 -5 6149 4355 261 294 156 33 chr4 67000589 67000769 -135327578 - MIR SINE MIR -55 207 6 1816 138 167 14 chr4 67001627 67001998 -135326349 - MSTA LTR MaLR 0 428 1 1553 244 47 33 chr4 67002194 67002645 -135325702 - MER76 LTR ERV -5 683 227 496 172 21 11 chr4 67002644 67002737 -135325610 - MER76 LTR ERV -594 94 1 * 2880 135 113 41 chr4 67002981 67003572 -135324775 - MER51A LTR ERV1 0 634 1 22 35 0 0 chr4 67004269 67004298 -135324049 + AT_rich Low_complexity Low_complexity 1 29 0 296 150 11 59 chr4 67005263 67005450 -135322897 + (TA)n Simple_repeat Simple_repeat 1 178 0 1159 123 26 31 chr4 67005505 67005700 -135322647 - MLT2A1 LTR ERVL -45 399 206 997 108 0 0 chr4 67005701 67005840 -135322507 - AluY SINE Alu -2 309 171 1267 103 44 10 chr4 67005841 67006045 -135322302 - MLT2A1 LTR ERVL -233 211 1 3861 163 40 33 chr4 67006195 67006951 -135321396 - Tigger2 DNA MER2_type -1957 761 1 1976 148 6 3 chr4 67007413 67007724 -135320623 + AluSx SINE Alu 1 312 0 1727 226 8 8 chr4 67008116 67008483 -135319864 - LOR1b LTR ERV1 0 461 95 1971 108 0 0 chr4 67008483 67008742 -135319605 + AluY SINE Alu 1 259 -52 339 93 0 0 chr4 67008742 67008785 -135319562 - LOR1b-int LTR ERV1 -37 8083 8041 1528 132 37 0 chr4 67008797 67009039 -135319308 - LOR1-int LTR ERV1 -2058 6062 5812 17828 125 41 30 chr4 67009041 67009247 -135319100 - LOR1-int LTR ERV1 -2596 5524 5322 2065 136 3 0 chr4 67009247 67009548 -135318799 + AluSx SINE Alu 1 302 -10 17828 125 41 30 chr4 67009548 67010253 -135318094 - LOR1-int LTR ERV1 -2798 5322 4627 2290 98 0 3 chr4 67010253 67010560 -135317787 - AluY SINE Alu -5 306 1 17828 125 41 30 chr4 67010560 67012886 -135315461 - LOR1-int LTR ERV1 -3493 4627 2248 1267 163 5 0 chr4 67012890 67013086 -135315261 + AluSq SINE Alu 5 201 -112 325 314 8 40 chr4 67013667 67013791 -135314556 - MIR3 SINE MIR -23 185 66 30 45 0 0 chr4 67013809 67013853 -135314494 + AT_rich Low_complexity Low_complexity 1 44 0 207 299 145 51 chr4 67015371 67015488 -135312859 - L2 LINE L2 -9 3263 3136 1063 105 0 0 chr4 67015544 67015687 -135312660 + AluSg SINE Alu 1 143 -167 2097 109 14 3 chr4 67015690 67015983 -135312364 + AluY SINE Alu 3 298 -13 1889 136 3 43 chr4 67016219 67016542 -135311805 - AluSx SINE Alu -2 310 1 23 0 0 0 chr4 67016858 67016881 -135311466 + AT_rich Low_complexity Low_complexity 1 23 0 65 66 0 0 chr4 67016951 67017072 -135311275 + AT_rich Low_complexity Low_complexity 1 121 0 26 93 0 0 chr4 67017166 67017241 -135311106 + AT_rich Low_complexity Low_complexity 1 75 0 25 51 0 0 chr4 67017654 67017693 -135310654 + AT_rich Low_complexity Low_complexity 1 39 0 279 0 0 0 chr4 67017933 67017964 -135310383 + (CA)n Simple_repeat Simple_repeat 1 31 0 318 353 47 6 chr4 67018085 67018255 -135310092 + L2 LINE L2 2315 2491 -823 22 0 0 0 chr4 67018629 67018651 -135309696 + AT_rich Low_complexity Low_complexity 1 22 0 697 122 0 0 chr4 67018831 67018938 -135309409 + AluSg/x SINE Alu 188 294 -16 312 237 40 0 chr4 67019237 67019313 -135309034 - MER116 DNA Mariner -1 79 1 26 74 0 0 chr4 67019638 67019692 -135308655 + AT_rich Low_complexity Low_complexity 1 54 0 2163 165 82 12 chr4 67020381 67020781 -135307566 + MSTA LTR MaLR 1 428 0 24 32 0 0 chr4 67020996 67021027 -135307320 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 67021983 67022005 -135306342 + AT_rich Low_complexity Low_complexity 1 22 0 25 95 0 0 chr4 67022288 67022362 -135305985 + AT_rich Low_complexity Low_complexity 1 74 0 654 238 0 20 chr4 67023165 67023312 -135305035 - FRAM SINE Alu -33 143 1 375 143 52 0 chr4 67023603 67023680 -135304667 + L1P LINE L1 2881 2961 -3185 348 208 79 0 chr4 67023789 67023890 -135304457 - MER33 DNA MER1_type -31 332 224 326 211 26 0 chr4 67023898 67023974 -135304373 + MLT2C2 LTR ERVL 1 78 -386 * 351 137 0 0 chr4 67023957 67024008 -135304339 - Tigger5 DNA MER2_type -147 2176 2126 1335 98 5 0 chr4 67024035 67024219 -135304128 + AluY SINE Alu 124 308 -3 246 156 0 0 chr4 67024222 67024267 -135304080 + (TG)n Simple_repeat Simple_repeat 2 46 0 696 215 0 7 chr4 67024286 67024430 -135303917 + Tigger5 DNA MER2_type 2175 2317 -6 216 97 0 0 chr4 67024442 67024473 -135303874 + (TG)n Simple_repeat Simple_repeat 2 32 0 297 119 0 0 chr4 67024473 67024515 -135303832 + MLT2C2 LTR ERVL 423 464 0 775 178 45 0 chr4 67024523 67024680 -135303667 - MER33 DNA MER1_type -147 177 14 302 281 59 52 chr4 67024752 67025022 -135303325 - L1ME LINE L1 -277 5844 5573 22 35 0 0 chr4 67025132 67025161 -135303186 + AT_rich Low_complexity Low_complexity 1 29 0 261 351 46 15 chr4 67025224 67025355 -135302992 - MER5A DNA MER1_type -7 182 48 1977 128 34 17 chr4 67027461 67027757 -135300590 - AluSx SINE Alu -9 303 3 282 116 0 0 chr4 67027759 67027802 -135300545 + (T)n Simple_repeat Simple_repeat 1 43 0 351 253 13 0 chr4 67028180 67028259 -135300088 - L2 LINE L2 -1 3312 3233 29 28 0 0 chr4 67028693 67028729 -135299618 + AT_rich Low_complexity Low_complexity 1 36 0 1464 258 83 67 chr4 67028805 67029891 -135298456 - L1MC5 LINE L1 -111 7850 6748 22 56 0 0 chr4 67030025 67030061 -135298286 + AT_rich Low_complexity Low_complexity 1 36 0 260 51 0 26 chr4 67030869 67030908 -135297439 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 6432 95 4 3 chr4 67030909 67032350 -135295997 - L1PA8 LINE L1 -24 6148 4705 6523 122 2 1 chr4 67032350 67033336 -135295011 + L1PA8 LINE L1 3716 4702 -1444 313 342 64 64 chr4 67033358 67033611 -135294736 - HAL1 LINE L1 -1 2506 2254 1610 86 0 14 chr4 67033611 67033832 -135294515 - AluY SINE Alu -9 302 85 313 342 64 64 chr4 67033832 67034174 -135294173 - HAL1 LINE L1 -252 2255 1911 413 310 89 55 chr4 67034260 67034621 -135293726 - HAL1 LINE L1 -758 1749 1377 307 338 71 38 chr4 67034693 67034959 -135293388 - HAL1 LINE L1 -1351 1156 882 192 40 0 0 chr4 67034965 67034990 -135293357 + (TG)n Simple_repeat Simple_repeat 2 26 0 8681 195 15 7 chr4 67035146 67038182 -135290165 - L1PB2 LINE L1 -1 6866 3805 6660 183 35 17 chr4 67038179 67039358 -135288989 - L1PB2 LINE L1 -3865 2997 1841 * 5032 104 104 0 chr4 67039358 67040105 -135288242 - LTR12 LTR ERV1 0 826 2 6660 183 35 17 chr4 67040105 67040568 -135287779 - L1PB2 LINE L1 -5021 1841 1388 207 0 0 0 chr4 67040568 67040591 -135287756 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6660 183 35 17 chr4 67040591 67041669 -135286678 - L1PB2 LINE L1 -5474 1388 660 3092 251 58 10 chr4 67041663 67042461 -135285886 - L1PB2 LINE L1 -6018 845 10 * 1655 195 7 7 chr4 67042968 67043270 -135285077 + AluJo SINE Alu 3 304 -8 2686 168 2 22 chr4 67043443 67043950 -135284397 - LOR1a LTR ERV1 0 497 1 253 333 0 0 chr4 67044231 67044303 -135284044 - MLT1H LTR MaLR -73 476 405 683 276 85 50 chr4 67044666 67044949 -135283398 - MLT1H LTR MaLR -244 305 13 286 245 20 53 chr4 67046746 67046838 -135281509 - L1MA10 LINE L1 -2 6332 6241 458 259 72 26 chr4 67046838 67047031 -135281316 - L1ME1 LINE L1 -80 6086 5885 243 0 0 0 chr4 67047632 67047659 -135280688 + (CA)n Simple_repeat Simple_repeat 1 27 0 1145 258 78 47 chr4 67047948 67048392 -135279955 - LTR40c LTR ERVL -14 505 5 686 348 70 41 chr4 67048496 67048851 -135279496 + ERVL LTR ERVL 3455 3798 -1750 2135 89 32 0 chr4 67048851 67049133 -135279214 - AluY SINE Alu -20 291 1 686 348 70 41 chr4 67049133 67049772 -135278575 + ERVL LTR ERVL 3798 4661 -887 1502 174 0 14 chr4 67050156 67050449 -135277898 - L1PA13 LINE L1 -3 6160 5872 2248 135 0 6 chr4 67050449 67050790 -135277557 - MER9 LTR ERVK 0 511 173 8054 212 11 31 chr4 67050896 67052694 -135275653 - L1PA13 LINE L1 -755 5391 3630 244 154 0 0 chr4 67052737 67052776 -135275571 + LTR55 LTR ERV 5 43 -505 569 232 0 0 chr4 67052776 67052888 -135275459 - FLAM_C SINE Alu -11 132 21 1476 231 51 72 chr4 67052914 67052989 -135275358 + LTR55 LTR ERV 37 112 -436 1870 146 0 4 chr4 67052989 67053290 -135275057 - AluSg SINE Alu 0 300 1 1476 231 51 72 chr4 67053290 67053725 -135274622 + LTR55 LTR ERV 112 537 -11 1527 202 65 94 chr4 67053792 67054237 -135274110 + MLT1C-int LTR MaLR 939 1370 -1 1121 217 109 76 chr4 67054243 67054660 -135273687 + MLT1C LTR MaLR 6 454 -13 707 327 71 22 chr4 67054910 67055317 -135273030 + LTR16A LTR ERVL 18 444 -6 23 33 0 0 chr4 67055322 67055352 -135272995 + AT_rich Low_complexity Low_complexity 1 30 0 33 100 0 0 chr4 67058003 67058113 -135270234 + AT_rich Low_complexity Low_complexity 1 110 0 192 77 0 0 chr4 67058267 67058293 -135270054 + (T)n Simple_repeat Simple_repeat 1 26 0 180 424 48 8 chr4 67058338 67058463 -135269884 - L2 LINE L2 -633 2681 2552 370 287 33 27 chr4 67059297 67059447 -135268900 + L1ME LINE L1 434 584 -5621 207 0 0 0 chr4 67059468 67059491 -135268856 + (TG)n Simple_repeat Simple_repeat 1 23 0 2414 125 3 0 chr4 67059523 67059874 -135268473 - THE1A LTR MaLR -2 353 2 383 68 17 0 chr4 67059874 67059933 -135268414 + (TA)n Simple_repeat Simple_repeat 1 60 0 361 211 21 94 chr4 67059937 67060166 -135268181 + L1M3b LINE L1 1269 1806 -4551 2923 231 66 10 chr4 67060260 67060931 -135267416 + MER21B LTR ERV1 134 841 -22 839 273 18 45 chr4 67060987 67061189 -135267158 + L1ME LINE L1 1456 1647 -4749 912 223 0 0 chr4 67061189 67061364 -135266983 + FAM SINE Alu 1 175 0 839 273 18 45 chr4 67061364 67061494 -135266853 + L1ME LINE L1 1647 1779 -4617 278 297 38 47 chr4 67061513 67061940 -135266407 + L1ME LINE L1 1874 2296 -4100 25 31 0 0 chr4 67062303 67062335 -135266012 + AT_rich Low_complexity Low_complexity 1 32 0 422 345 96 18 chr4 67062676 67062896 -135265451 + MIR SINE MIR 1 237 -25 328 93 0 74 chr4 67062930 67062982 -135265365 - MLT2C1 LTR ERVL 0 397 355 417 171 0 26 chr4 67062982 67063058 -135265289 + Tigger2 DNA MER2_type 2 75 -2643 708 269 0 0 chr4 67063082 67063238 -135265109 - MER8 DNA MER2_type -62 177 22 1637 239 11 5 chr4 67063301 67063316 -135265031 - MLT2D LTR ERVL -40 374 361 198 0 0 0 chr4 67063316 67063338 -135265009 + (GA)n Simple_repeat Simple_repeat 1 22 0 1637 239 11 5 chr4 67063338 67063694 -135264653 - MLT2D LTR ERVL -53 361 1 23 0 0 0 chr4 67063943 67063966 -135264381 + AT_rich Low_complexity Low_complexity 1 23 0 1940 194 46 28 chr4 67063994 67064431 -135263916 - Tigger2 DNA MER2_type -1 2717 2273 445 143 0 14 chr4 67064421 67064491 -135263856 - Tigger2 DNA MER2_type -2649 69 1 * 437 156 89 0 chr4 67064542 67064632 -135263715 + MER4A LTR ERV1 1 98 -566 1298 166 6 63 chr4 67064632 67064957 -135263390 + MER4A LTR ERV1 261 625 -39 19907 46 2 4 chr4 67064957 67068263 -135260084 - L1PA4 LINE L1 0 6155 2857 12447 88 5 13 chr4 67068257 67070001 -135258346 + L1P LINE L1 386 2116 -4030 * 1164 167 35 19 chr4 67070006 67070264 -135258083 + Harlequin LTR ERV1 1886 2147 -5973 1962 152 0 3 chr4 67070264 67070561 -135257786 + AluSg SINE Alu 1 296 -14 2087 123 176 134 chr4 67070562 67071234 -135257113 + LTR12 LTR ERV1 1 2310 -128 35332 99 11 6 chr4 67071234 67076152 -135252195 + HERV9 LTR ERV1 1 4944 -3455 1248 145 58 45 chr4 67076153 67076512 -135251835 + Harlequin LTR ERV1 840 1203 -5693 * 14583 94 3 13 chr4 67076479 67078574 -135249773 + Harlequin LTR ERV1 6326 8399 0 1721 87 175 251 chr4 67078574 67079203 -135249144 + LTR12 LTR ERV1 1 581 -133 884 117 0 0 chr4 67079203 67079377 -135248970 + AluSg/x SINE Alu 166 339 0 580 83 9 65 chr4 67079377 67079485 -135248862 + LOR1-int LTR ERV1 2140 2241 -5879 1183 282 21 60 chr4 67079791 67080521 -135247826 - L1MCa LINE L1 -3342 3222 2527 2227 111 0 0 chr4 67080521 67080818 -135247529 - AluSx SINE Alu -15 297 1 1183 282 21 60 chr4 67080818 67080926 -135247421 - L1MCa LINE L1 -4037 2527 2416 547 294 51 27 chr4 67080914 67081207 -135247140 - L1MCa LINE L1 -4977 1068 769 * 252 79 0 26 chr4 67081207 67081245 -135247102 + MSTB LTR MaLR 1 37 -389 382 130 43 0 chr4 67081246 67081315 -135247032 + MSTB2 LTR MaLR 386 457 0 7793 215 16 10 chr4 67081315 67082955 -135245392 + MSTB-int LTR MaLR 1 1651 0 1954 219 29 2 chr4 67082955 67083370 -135244977 + MSTB LTR MaLR 1 426 0 1658 295 45 29 chr4 67083372 67084132 -135244215 - L1MCa LINE L1 -5271 774 3 451 266 128 81 chr4 67084382 67084939 -135243408 + L1MEc LINE L1 986 1568 -4828 2316 84 0 10 chr4 67085251 67085559 -135242788 + AluY SINE Alu 1 305 -6 297 0 0 0 chr4 67085592 67085625 -135242722 + (CA)n Simple_repeat Simple_repeat 2 34 0 225 225 113 0 chr4 67085660 67085731 -135242616 + L1MC4 LINE L1 6614 6692 -1350 3399 164 30 57 chr4 67087269 67088002 -135240345 - Tigger2 DNA MER2_type -1 2717 2005 * 6609 162 28 32 chr4 67088001 67089272 -135239075 - Tigger2 DNA MER2_type -1451 1267 2 267 31 0 0 chr4 67089681 67089713 -135238634 + (CA)n Simple_repeat Simple_repeat 1 32 0 2116 111 0 23 chr4 67090958 67091264 -135237083 + AluSx SINE Alu 1 299 -13 1119 221 114 61 chr4 67092464 67092875 -135235472 - MLT1C LTR MaLR 0 467 35 439 344 76 0 chr4 67094413 67094768 -135233579 + L1MC4a LINE L1 5530 5911 -1897 1730 217 50 28 chr4 67094916 67095373 -135232974 - MLT1C LTR MaLR 0 467 1 234 146 36 0 chr4 67097442 67097497 -135230850 + (TAAA)n Simple_repeat Simple_repeat 4 60 0 397 312 104 17 chr4 67098014 67098357 -135229990 - L1ME3 LINE L1 -298 5864 5495 263 254 18 64 chr4 67098740 67098960 -135229387 - L1ME3 LINE L1 -678 5492 5283 427 207 17 139 chr4 67099369 67099606 -135228741 + L1MEc LINE L1 2441 2648 -3567 429 250 20 7 chr4 67099655 67099803 -135228544 + (TA)n Simple_repeat Simple_repeat 2 151 0 3173 248 37 15 chr4 67099809 67100244 -135228103 + L1M4 LINE L1 4228 4652 -1518 266 0 0 29 chr4 67100244 67100279 -135228068 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3173 248 37 15 chr4 67100279 67101017 -135227330 + L1M4 LINE L1 4652 5427 -743 2531 93 11 14 chr4 67101017 67101373 -135226974 - THE1A LTR MaLR 0 355 1 1762 127 81 0 chr4 67101373 67101657 -135226690 - THE1A-int LTR MaLR 0 1580 1274 12862 33 3 1 chr4 67101657 67103975 -135224372 - L1PA4 LINE L1 -4 6151 3828 39020 42 28 2 chr4 67104085 67108976 -135219371 - L1P LINE L1 -1083 5063 46 2173 119 0 0 chr4 67109869 67110172 -135218175 - AluSx SINE Alu -9 303 1 25 0 0 0 chr4 67110907 67110932 -135217415 + AT_rich Low_complexity Low_complexity 1 25 0 540 278 96 0 chr4 67111517 67111704 -135216643 + MER63A DNA MER1_type 4 208 -2 571 301 108 51 chr4 67112047 67112363 -135215984 - MLT2F LTR ERVL -4 659 326 687 260 115 32 chr4 67114131 67114661 -135213686 - L1M4 LINE L1 -2886 3260 2687 965 188 111 10 chr4 67114673 67114880 -135213467 + MLT1A1 LTR MaLR 4 231 -134 627 280 72 39 chr4 67114979 67115439 -135212908 - L1M4 LINE L1 -3549 2597 2123 2318 101 0 0 chr4 67115456 67115752 -135212595 - AluSg SINE Alu -14 296 1 411 159 0 0 chr4 67115915 67115984 -135212363 + MER31B LTR ERV1 3 71 -395 2006 222 95 26 chr4 67115993 67116606 -135211741 + MER67B LTR ERV1 1 655 -6 315 263 64 88 chr4 67116617 67116868 -135211479 - L1ME LINE L1 -576 5594 5350 471 330 57 37 chr4 67116940 67117395 -135210952 - L1ME LINE L1 -868 5278 4815 399 289 84 36 chr4 67117817 67118042 -135210305 + MER110 LTR ERV1 256 491 0 201 171 0 0 chr4 67118479 67118514 -135209833 + (TTAA)n Simple_repeat Simple_repeat 2 36 0 405 222 111 123 chr4 67118881 67119052 -135209295 - MER63A DNA MER1_type -1 209 41 2053 117 10 3 chr4 67119844 67120144 -135208203 + AluSg SINE Alu 1 302 -8 2153 79 38 3 chr4 67120144 67120434 -135207913 + AluY SINE Alu 1 300 -11 1526 141 4 20 chr4 67120531 67120779 -135207568 - AluSx SINE Alu -13 299 56 36 23 0 0 chr4 67121122 67121165 -135207182 + AT_rich Low_complexity Low_complexity 1 43 0 180 77 0 0 chr4 67122267 67122293 -135206054 + (CA)n Simple_repeat Simple_repeat 1 26 0 21 36 0 0 chr4 67122410 67122438 -135205909 + AT_rich Low_complexity Low_complexity 1 28 0 2609 205 56 26 chr4 67122495 67123179 -135205168 - L1MC3 LINE L1 -21 7764 7061 205 271 0 17 chr4 67123360 67123419 -135204928 + MIR3 SINE MIR 139 196 -12 225 316 95 38 chr4 67123471 67123629 -135204718 + L2 LINE L2 2605 2771 -543 1722 166 0 0 chr4 67123647 67123924 -135204423 + AluSx SINE Alu 1 277 -35 387 0 0 0 chr4 67123926 67123969 -135204378 + (CA)n Simple_repeat Simple_repeat 1 43 0 6781 25 0 0 chr4 67123988 67124780 -135203567 - L1PA3 LINE L1 -1561 4585 3794 7413 34 0 1 chr4 67124780 67126404 -135201943 + L1PA3 LINE L1 4590 6211 0 314 314 0 32 chr4 67128550 67128674 -135199673 + MLT1H LTR MaLR 67 186 -363 8475 201 30 12 chr4 67128920 67129043 -135199304 - L1PA16 LINE L1 -9 6157 6038 312 69 379 0 chr4 67129043 67129101 -135199246 - MADE1 DNA Mariner 0 80 1 8475 201 30 12 chr4 67129101 67131920 -135196427 - L1PA16 LINE L1 -128 6038 3162 196 303 48 83 chr4 67131964 67132109 -135196238 - L2 LINE L2 -773 2541 2402 24 53 0 0 chr4 67132471 67132509 -135195838 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr4 67132616 67132643 -135195704 + AT_rich Low_complexity Low_complexity 1 27 0 15075 231 48 16 chr4 67134020 67140593 -135187754 + L1PA15 LINE L1 1 6803 -13 990 238 53 0 chr4 67141116 67141360 -135186987 - L1ME1 LINE L1 -88 6078 5822 357 348 65 42 chr4 67141919 67142413 -135185934 + L2 LINE L2 2172 2676 -638 1066 246 64 36 chr4 67142503 67142938 -135185409 - MER39 LTR ERV1 0 698 70 193 397 46 33 chr4 67143063 67143214 -135185133 + L2 LINE L2 2921 3073 -199 1453 211 61 72 chr4 67143230 67143741 -135184606 - MLT1D LTR MaLR 0 505 1 2103 117 3 0 chr4 67143826 67144116 -135184231 - AluSx SINE Alu -21 291 1 22 35 0 0 chr4 67144123 67144152 -135184195 + AT_rich Low_complexity Low_complexity 1 29 0 44 75 0 0 chr4 67144454 67144547 -135183800 + AT_rich Low_complexity Low_complexity 1 93 0 24 0 0 0 chr4 67144674 67144698 -135183649 + AT_rich Low_complexity Low_complexity 1 24 0 366 311 49 55 chr4 67144829 67145012 -135183335 + LTR33A LTR ERVL 99 280 -243 3563 186 56 22 chr4 67145928 67146762 -135181585 - L1MA9 LINE L1 0 6312 5450 4635 174 34 3 chr4 67146910 67147820 -135180527 - L1MA8 LINE L1 -31 6260 5323 920 203 68 46 chr4 67148107 67148414 -135179933 + MER33 DNA MER1_type 1 306 -18 23 33 0 0 chr4 67148497 67148527 -135179820 + AT_rich Low_complexity Low_complexity 1 30 0 338 227 0 27 chr4 67148703 67148778 -135179569 - Tigger5 DNA MER2_type 0 2323 2251 265 269 0 0 chr4 67148750 67148802 -135179545 - Tigger5 DNA MER2_type -2271 52 1 * 27 0 0 0 chr4 67149711 67149738 -135178609 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr4 67150868 67150897 -135177450 + AT_rich Low_complexity Low_complexity 1 29 0 259 374 89 15 chr4 67151527 67151730 -135176617 + MIR SINE MIR 35 252 -10 21 57 0 0 chr4 67152153 67152188 -135176159 + AT_rich Low_complexity Low_complexity 1 35 0 302 315 88 50 chr4 67154472 67154732 -135173615 + L2 LINE L2 2236 2505 -809 186 356 30 0 chr4 67154887 67154988 -135173359 + L2 LINE L2 2748 2851 -463 998 336 50 23 chr4 67154989 67155512 -135172835 - L2 LINE L2 -630 2684 2148 54 49 0 0 chr4 67155595 67155677 -135172670 + AT_rich Low_complexity Low_complexity 1 82 0 28 79 0 0 chr4 67156239 67156302 -135172045 + AT_rich Low_complexity Low_complexity 1 63 0 245 250 83 0 chr4 67156355 67156451 -135171896 - L1MEc LINE L1 -3373 2842 2739 1509 164 27 24 chr4 67156587 67156922 -135171425 - L1MA8 LINE L1 -4 6287 5952 590 278 47 47 chr4 67156936 67157321 -135171026 - L1MEc LINE L1 -3624 2591 2207 337 341 85 9 chr4 67157806 67158017 -135170330 - L1MEc LINE L1 -4735 1661 1435 9553 28 1 0 chr4 67158069 67159450 -135168897 + L1P1 LINE L1 4235 5617 -538 180 0 0 0 chr4 67159775 67159795 -135168552 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1199 272 25 22 chr4 67159873 67160274 -135168073 - LTR40c LTR ERVL -6 459 58 3974 254 52 21 chr4 67161080 67161893 -135166454 - L1M4 LINE L1 -923 6034 5155 4241 204 19 2 chr4 67161893 67162744 -135165603 + MER6 DNA MER2_type 1 865 0 3974 254 52 21 chr4 67162744 67163387 -135164960 - L1M4 LINE L1 -1802 5155 4533 3682 263 90 51 chr4 67163384 67163999 -135164348 - L1M4 LINE L1 -4885 1970 1380 * 1738 173 62 3 chr4 67163999 67164340 -135164007 + MER46B DNA MER2_type 1 236 0 3682 263 90 51 chr4 67164340 67165475 -135162872 - L1M4 LINE L1 -5475 1380 164 2059 138 0 0 chr4 67165475 67165771 -135162576 - AluSx SINE Alu -14 298 3 3682 263 90 51 chr4 67165771 67165930 -135162417 - L1M4 LINE L1 -6691 164 13 650 260 46 46 chr4 67165948 67166167 -135162180 - MLT1D LTR MaLR -284 221 3 2348 70 7 3 chr4 67166366 67166667 -135161680 + AluY SINE Alu 1 302 -9 258 362 0 39 chr4 67166677 67166804 -135161543 + MLT1K LTR MaLR 376 497 -91 1276 222 42 83 chr4 67167300 67167852 -135160495 + MER39 LTR ERV1 1 707 0 259 320 39 0 chr4 67167875 67167953 -135160394 + MIR SINE MIR 28 108 -154 25 0 0 0 chr4 67167959 67167984 -135160363 + AT_rich Low_complexity Low_complexity 1 25 0 350 240 53 0 chr4 67168116 67168191 -135160156 + MER96 DNA MER1_type? 97 175 0 23 22 0 44 chr4 67168987 67169006 -135159341 + AT_rich Low_complexity Low_complexity 1 19 -24 1841 107 52 11 chr4 67169006 67169304 -135159043 - AluSg SINE Alu 0 309 1 23 22 0 44 chr4 67169304 67169328 -135159019 + AT_rich Low_complexity Low_complexity 19 43 0 29 0 0 0 chr4 67169959 67169988 -135158359 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr4 67170412 67170435 -135157912 + (CAA)n Simple_repeat Simple_repeat 2 24 0 252 0 0 0 chr4 67170738 67170766 -135157581 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 21 57 0 0 chr4 67171222 67171257 -135157090 + AT_rich Low_complexity Low_complexity 1 35 0 5388 145 13 13 chr4 67172658 67173644 -135154703 - L1PA14 LINE L1 -17 6144 5161 616 321 34 11 chr4 67174474 67174736 -135153611 + LTR16A1 LTR ERVL 190 457 0 986 233 137 58 chr4 67174857 67175287 -135153060 - MLT1C LTR MaLR 0 467 4 268 232 43 14 chr4 67175812 67175881 -135152466 - MIR SINE MIR -15 247 177 39 0 0 0 chr4 67176791 67176830 -135151517 + AT_rich Low_complexity Low_complexity 1 39 0 253 313 18 36 chr4 67176924 67177036 -135151311 - L2 LINE L2 -6 3307 3198 23 0 0 0 chr4 67177555 67177578 -135150769 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 67178209 67178231 -135150116 + AT_rich Low_complexity Low_complexity 1 22 0 783 204 146 44 chr4 67178393 67178687 -135149660 - MER33 DNA MER1_type 0 324 1 211 211 0 0 chr4 67178690 67178742 -135149605 + (TA)n Simple_repeat Simple_repeat 2 53 0 23 33 0 0 chr4 67178997 67179027 -135149320 + AT_rich Low_complexity Low_complexity 1 30 0 240 314 57 0 chr4 67179214 67179319 -135149028 - MIR SINE MIR 0 262 152 335 307 44 7 chr4 67179852 67179989 -135148358 + MIR SINE MIR 73 214 -48 22 70 0 0 chr4 67180377 67180420 -135147927 + AT_rich Low_complexity Low_complexity 1 43 0 23 68 0 0 chr4 67180472 67180516 -135147831 + AT_rich Low_complexity Low_complexity 1 44 0 24 32 0 0 chr4 67180619 67180650 -135147697 + AT_rich Low_complexity Low_complexity 1 31 0 260 281 37 0 chr4 67181884 67181966 -135146381 + Zaphod DNA AcHobo 8 92 -3939 345 24 0 0 chr4 67182626 67182668 -135145679 + (TG)n Simple_repeat Simple_repeat 2 43 0 717 312 239 2 chr4 67182839 67183336 -135145011 - L2 LINE L2 -907 2407 1793 330 26 0 0 chr4 67184231 67184270 -135144077 + (CA)n Simple_repeat Simple_repeat 2 40 0 4079 253 28 75 chr4 67184294 67185671 -135142676 + L1 LINE L1 2776 4086 -2060 1409 225 74 27 chr4 67185670 67186115 -135142232 - L1 LINE L1 -1725 4421 3956 * 2465 244 37 2 chr4 67186131 67186820 -135141527 - L1PA15-16 LINE L1 -3792 3057 2347 1128 223 174 27 chr4 67186827 67187195 -135141152 - MSTA LTR MaLR 0 428 7 1000 174 5 0 chr4 67187196 67188630 -135139717 - ALR/Alpha Satellite centromeric 0 1440 1 983 168 6 1 chr4 67188643 67189069 -135139278 - ALR/Alpha Satellite centromeric 0 428 1 1105 157 6 5 chr4 67189085 67192707 -135135640 - ALR/Alpha Satellite centromeric 0 3627 1 369 0 0 0 chr4 67192707 67192748 -135135599 + (A)n Simple_repeat Simple_repeat 1 41 0 40048 68 7 1 chr4 67192782 67198878 -135129469 + L1PA4 LINE L1 1 6155 0 1151 161 13 4 chr4 67198889 67204110 -135124237 - ALR/Alpha Satellite centromeric -7 5269 1 7801 88 5 9 chr4 67204110 67205172 -135123175 + MER11C LTR ERVK 1 1057 -14 1029 161 17 3 chr4 67205199 67207765 -135120582 - ALR/Alpha Satellite centromeric 0 2601 1 200 83 0 28 chr4 67207792 67207828 -135120519 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 363 252 107 131 chr4 67208353 67209058 -135119289 - L1M2 LINE L1 -5513 1336 535 195 362 75 32 chr4 67210838 67211026 -135117321 - MIR SINE MIR -49 213 18 250 191 0 0 chr4 67211766 67211808 -135116539 - MER21-int LTR ERV1 -4478 458 417 1647 255 45 18 chr4 67213467 67213957 -135114390 - MLT1D LTR MaLR -2 503 1 2045 111 0 0 chr4 67214313 67214616 -135113731 + AluSg SINE Alu 1 303 0 341 260 16 39 chr4 67216968 67217095 -135111252 - MER21-int LTR ERV1 -2356 1835 1712 850 188 27 0 chr4 67217183 67217332 -135111015 + MSTD LTR MaLR 244 396 0 282 56 0 0 chr4 67218155 67218191 -135110156 + (CA)n Simple_repeat Simple_repeat 2 37 0 377 299 125 27 chr4 67218865 67219049 -135109298 - MIR SINE MIR 0 262 61 27 29 0 0 chr4 67219362 67219396 -135108951 + AT_rich Low_complexity Low_complexity 1 34 0 533 287 62 36 chr4 67219649 67220039 -135108308 + L1ME3A LINE L1 5257 5656 -506 30 27 0 0 chr4 67220149 67220186 -135108161 + AT_rich Low_complexity Low_complexity 1 37 0 2603 189 42 6 chr4 67220281 67220920 -135107427 + MER39 LTR ERV1 7 707 0 246 244 65 32 chr4 67221127 67221250 -135107097 + L1ME3A LINE L1 5799 5925 -245 56 71 0 0 chr4 67221490 67221602 -135106745 + AT_rich Low_complexity Low_complexity 1 112 0 3440 165 89 8 chr4 67221705 67222370 -135105977 - LTR1B LTR ERV1 -107 719 1 357 306 59 50 chr4 67222407 67222629 -135105718 - HAL1 LINE L1 -2174 333 110 233 56 0 28 chr4 67222987 67223023 -135105324 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1704 141 52 0 chr4 67223026 67223295 -135105052 - AluSg SINE Alu -27 283 1 29 28 0 0 chr4 67223609 67223645 -135104702 + AT_rich Low_complexity Low_complexity 1 36 0 342 134 0 0 chr4 67224071 67224138 -135104209 + (GA)n Simple_repeat Simple_repeat 2 68 0 366 281 30 55 chr4 67224869 67225033 -135103314 + MLT1J2 LTR MaLR 3 162 -288 585 184 9 0 chr4 67225072 67225186 -135103161 + Ricksha_b DNA DNA 1 115 -1139 4448 182 29 54 chr4 67225193 67226286 -135102061 + Ricksha_b DNA DNA 232 1646 -41 1721 199 78 2 chr4 67226311 67226707 -135101640 + MSTB LTR MaLR 1 426 0 25 0 0 0 chr4 67227174 67227199 -135101148 + AT_rich Low_complexity Low_complexity 1 25 0 35 41 0 0 chr4 67227234 67227283 -135101064 + AT_rich Low_complexity Low_complexity 1 49 0 243 0 0 0 chr4 67227540 67227567 -135100780 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 6292 22 0 7 chr4 67227567 67228304 -135100043 - L1PA3 LINE L1 -11 6144 5413 23 54 0 0 chr4 67228583 67228620 -135099727 + AT_rich Low_complexity Low_complexity 1 37 0 284 255 121 21 chr4 67229058 67229199 -135099148 - MER5C DNA MER1_type -4 320 166 526 209 99 50 chr4 67229251 67229452 -135098895 - L1MCc LINE L1 -3432 3509 3299 284 250 11 0 chr4 67229479 67229567 -135098780 - L1MCc LINE L1 -4820 2121 2033 751 282 83 52 chr4 67229581 67230566 -135097781 - L1MCc LINE L1 -4890 1533 855 459 289 114 19 chr4 67230566 67230977 -135097370 - L1MCa LINE L1 -4120 2487 2038 248 180 0 0 chr4 67231082 67231132 -135097215 - L1MCa LINE L1 -4738 1688 1639 486 242 39 74 chr4 67231212 67231443 -135096904 - L1MCa LINE L1 -4946 1480 1258 464 253 84 44 chr4 67231470 67231703 -135096644 - L1MCa LINE L1 -5065 1351 955 233 270 14 0 chr4 67232255 67232329 -135096018 + (ATG)n Simple_repeat Simple_repeat 3 77 0 2266 109 3 3 chr4 67232781 67233094 -135095253 + AluSp SINE Alu 1 313 0 2218 108 42 31 chr4 67233701 67234061 -135094286 - THE1B LTR MaLR 0 364 1 674 362 79 3 chr4 67234590 67234957 -135093390 + LTR16C LTR ERVL 97 491 0 45 34 0 0 chr4 67237503 67237562 -135090785 + AT_rich Low_complexity Low_complexity 1 59 0 2274 103 0 0 chr4 67237612 67237904 -135090443 - AluSc SINE Alu -17 292 1 3605 164 86 131 chr4 67238014 67238359 -135089988 - Tigger3b DNA MER2_type -1841 1187 828 1601 210 52 12 chr4 67238359 67238683 -135089664 - MER1B DNA MER1_type 0 337 1 3605 164 86 131 chr4 67238683 67239578 -135088769 - Tigger3b DNA MER2_type -2200 828 3 1342 181 48 45 chr4 67239590 67239927 -135088420 + MER31B LTR ERV1 1 338 -128 4888 245 40 56 chr4 67239950 67242488 -135085859 + L1PA11 LINE L1 10 2529 -3932 15196 164 14 15 chr4 67242491 67246289 -135082058 + L1PA11 LINE L1 2674 6485 -4 372 242 0 31 chr4 67246330 67246458 -135081889 - L1MA9 LINE L1 -37 6275 6152 264 241 28 19 chr4 67246459 67246567 -135081780 + (TA)n Simple_repeat Simple_repeat 1 109 0 23 0 0 0 chr4 67246577 67246600 -135081747 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 67246773 67246803 -135081544 + AT_rich Low_complexity Low_complexity 1 30 0 511 226 62 128 chr4 67247495 67247752 -135080595 + MIR SINE MIR 21 260 -2 1309 195 4 37 chr4 67247870 67248142 -135080205 - MLT2B1 LTR ERVL -257 263 1 777 267 92 35 chr4 67248149 67248383 -135079964 + MLT1C LTR MaLR 130 388 -79 3548 112 7 7 chr4 67248383 67248920 -135079427 - L1PA14 LINE L1 0 6161 5625 777 267 92 35 chr4 67248920 67249000 -135079347 + MLT1C LTR MaLR 388 462 -5 3365 224 33 22 chr4 67249457 67250042 -135078305 - L1MB7 LINE L1 -22 6162 5563 2712 190 23 32 chr4 67250042 67250662 -135077685 - L1PA16 LINE L1 -17 6149 5536 3365 224 33 22 chr4 67250662 67251056 -135077291 - L1MB7 LINE L1 -621 5563 5175 2417 177 2 0 chr4 67251056 67251458 -135076889 - LOR1a LTR ERV1 0 497 95 944 206 0 11 chr4 67251560 67251740 -135076607 + LOR1b LTR ERV1 126 303 -158 1404 132 5 0 chr4 67251746 67251950 -135076397 - AluSp SINE Alu -9 304 100 1135 161 0 0 chr4 67251950 67252124 -135076223 + LOR1a LTR ERV1 324 497 0 32 0 0 0 chr4 67252252 67252284 -135076063 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr4 67252671 67252696 -135075651 + AT_rich Low_complexity Low_complexity 1 25 0 282 117 133 0 chr4 67252876 67252936 -135075411 - MLT2A2 LTR ERVL 0 453 386 14140 44 1 0 chr4 67252956 67254705 -135073642 - L1PA4 LINE L1 -777 5369 3620 6330 53 2 0 chr4 67254705 67255496 -135072851 + L1PA4 LINE L1 5353 6153 -2 236 28 0 0 chr4 67255511 67255547 -135072800 + L1PA4 LINE L1 6119 6154 -1 593 46 4 92 chr4 67255569 67255833 -135072514 + (TA)n Simple_repeat Simple_repeat 1 240 0 654 349 50 33 chr4 67257188 67257667 -135070680 + L2 LINE L2 2032 2518 -796 2213 229 54 116 chr4 67257673 67258832 -135069515 + MER52A LTR ERV1 666 1753 -2 396 207 47 18 chr4 67258883 67259052 -135069295 + (TA)n Simple_repeat Simple_repeat 1 174 0 1370 190 207 17 chr4 67259103 67259513 -135068834 + MER34 LTR ERV1 27 514 -28 282 246 0 0 chr4 67259527 67259584 -135068763 + L2 LINE L2 2612 2668 -646 7830 47 2 6 chr4 67260167 67261924 -135066423 + L1PA5 LINE L1 4390 6150 -4 6076 47 0 1 chr4 67262911 67263688 -135064659 + L1PA4 LINE L1 5402 6155 0 1278 264 8 21 chr4 67266118 67266497 -135061850 - MLT1A2 LTR MaLR 0 374 1 213 154 0 0 chr4 67266747 67266786 -135061561 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1023 227 80 67 chr4 67266821 67267284 -135061063 - Charlie1b DNA MER1_type -5 518 50 21 0 0 0 chr4 67268279 67268300 -135060047 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 67269152 67269174 -135059173 + AT_rich Low_complexity Low_complexity 1 22 0 608 301 93 31 chr4 67269651 67270600 -135057747 + L1ME3A LINE L1 3544 4551 -1595 734 258 52 28 chr4 67270600 67270813 -135057534 - MER20 DNA MER1_type 0 219 2 631 295 40 9 chr4 67270834 67271125 -135057222 + L1ME3A LINE L1 4570 4869 -1277 953 63 0 0 chr4 67271171 67271298 -135057049 - L1PA4 LINE L1 -3 6152 6026 1786 263 105 34 chr4 67271395 67272396 -135055951 + L1ME3A LINE L1 5039 6148 -22 22 0 0 0 chr4 67272699 67272721 -135055626 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 67272995 67273023 -135055324 + AT_rich Low_complexity Low_complexity 1 28 0 2384 204 16 0 chr4 67273223 67273712 -135054635 + L1MB3 LINE L1 5657 6153 -30 192 77 0 0 chr4 67273716 67273742 -135054605 + (TA)n Simple_repeat Simple_repeat 1 26 0 29 0 0 0 chr4 67273780 67273809 -135054538 + AT_rich Low_complexity Low_complexity 1 29 0 231 158 26 13 chr4 67273883 67273959 -135054388 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 1264 262 209 50 chr4 67273993 67274932 -135053415 + MER52A LTR ERV1 668 1755 0 2004 163 32 12 chr4 67275233 67275913 -135052434 - L1PA16 LINE L1 -3 6163 5389 293 300 25 6 chr4 67276038 67276198 -135052149 - L1MEc LINE L1 -4980 1416 1254 1258 209 30 4 chr4 67276337 67276605 -135051742 - L1PA16 LINE L1 -4 6162 5888 326 186 12 0 chr4 67276867 67276953 -135051394 + (TA)n Simple_repeat Simple_repeat 1 87 0 30 83 0 0 chr4 67276984 67277056 -135051291 + AT_rich Low_complexity Low_complexity 1 72 0 21 21 0 64 chr4 67278540 67278587 -135049760 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr4 67279271 67279294 -135049053 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr4 67280243 67280265 -135048082 + (CA)n Simple_repeat Simple_repeat 1 22 0 244 352 83 0 chr4 67280734 67280842 -135047505 + L2 LINE L2 3156 3272 -41 229 419 63 14 chr4 67281233 67281455 -135046892 - L2 LINE L2 -414 2900 2668 213 118 59 0 chr4 67282262 67282313 -135046034 + (TA)n Simple_repeat Simple_repeat 1 54 0 213 94 0 0 chr4 67282649 67282681 -135045666 + (TA)n Simple_repeat Simple_repeat 2 33 0 1837 197 8 14 chr4 67282746 67282979 -135045368 - MER47A DNA MER2_type -1958 365 133 1576 180 14 32 chr4 67282979 67283324 -135045023 + MER44D DNA MER2_type 1 609 0 1837 197 8 14 chr4 67283324 67283456 -135044891 - MER47A DNA MER2_type -2190 133 2 1824 130 39 3 chr4 67283566 67283851 -135044496 + AluSg SINE Alu 1 295 -15 432 292 124 22 chr4 67283867 67284052 -135044295 - L2 LINE L2 -365 2949 2746 2302 59 3 10 chr4 67284254 67284560 -135043787 + AluY SINE Alu 1 304 -7 1605 140 6 60 chr4 67284575 67284889 -135043458 - Tigger2 DNA MER2_type -46 2672 2376 1471 245 93 8 chr4 67284886 67285262 -135043085 - MER74A LTR ERVL -127 431 24 * 1019 246 19 35 chr4 67285320 67285637 -135042710 - L1M4 LINE L1 -1870 4276 3965 349 314 72 28 chr4 67285643 67285914 -135042433 + L1M1 LINE L1 4898 5156 -1051 1447 204 3 39 chr4 67285914 67286223 -135042124 + AluJb SINE Alu 1 298 -4 349 314 72 28 chr4 67286223 67286462 -135041885 + L1M1 LINE L1 5156 5432 -775 268 279 30 12 chr4 67287484 67287649 -135040698 - HAL1b LINE L1 -252 1096 929 39 22 0 0 chr4 67287656 67287702 -135040645 + AT_rich Low_complexity Low_complexity 1 46 0 2157 84 3 34 chr4 67288492 67288813 -135039534 + AluY SINE Alu 1 311 0 3602 79 0 41 chr4 67289339 67289872 -135038475 - L1P LINE L1 -971 5175 4665 1853 79 4 0 chr4 67289870 67290123 -135038224 + L1P LINE L1 4391 4644 -1502 * 419 315 0 0 chr4 67290123 67290250 -135038097 - MER57A-int LTR ERV1 -545 6992 6866 191 36 36 0 chr4 67290275 67290303 -135038044 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 586 247 113 53 chr4 67290324 67290777 -135037570 - MER57A-int LTR ERV1 -2583 2353 1874 22 35 0 0 chr4 67290829 67290858 -135037489 + AT_rich Low_complexity Low_complexity 1 29 0 288 244 39 0 chr4 67290858 67290936 -135037411 - MER34 LTR ERV1 -329 213 133 943 216 111 44 chr4 67291053 67291442 -135036905 - MER57A-int LTR ERV1 -3470 1466 1052 556 229 7 14 chr4 67291585 67291725 -135036622 - MER57A-int LTR ERV1 -4504 432 294 32 26 0 0 chr4 67291725 67291764 -135036583 + AT_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr4 67291764 67291784 -135036563 + (TTG)n Simple_repeat Simple_repeat 2 21 0 603 266 96 28 chr4 67292615 67293026 -135035321 - MER57A LTR ERV1 0 403 20 248 82 0 41 chr4 67293892 67293941 -135034406 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 273 75 0 0 chr4 67293947 67293987 -135034360 + (CA)n Simple_repeat Simple_repeat 1 40 0 3293 213 45 9 chr4 67294112 67295130 -135033217 - L1MB7 LINE L1 -3 6181 5129 405 307 7 0 chr4 67295138 67295275 -135033072 - L1M4 LINE L1 -913 5233 5096 669 269 86 91 chr4 67295465 67295933 -135032414 + L1ME3A LINE L1 5139 5608 -562 238 173 0 0 chr4 67295933 67295985 -135032362 - LTR66 LTR ERVL -165 445 394 669 269 86 91 chr4 67295985 67296277 -135032070 + L1ME3A LINE L1 5608 5957 -213 3347 140 8 10 chr4 67296277 67296799 -135031548 - MER1A DNA MER1_type -2 525 5 669 269 86 91 chr4 67296799 67296845 -135031502 + L1ME3A LINE L1 5957 6002 -168 871 176 69 73 chr4 67296856 67297089 -135031258 + LOR1b LTR ERV1 1 232 -229 * 998 179 54 0 chr4 67297076 67297260 -135031087 + LOR1a LTR ERV1 304 497 0 971 239 77 27 chr4 67297849 67298108 -135030239 - MLT1A1 LTR MaLR -93 272 1 564 291 146 34 chr4 67298402 67298839 -135029508 - LTR8A LTR ERV1 0 727 119 408 251 111 31 chr4 67298842 67299112 -135029235 - LTR8 LTR ERV1 -399 142 1 242 216 14 0 chr4 67299122 67299196 -135029151 + CT-rich Low_complexity Low_complexity 3 77 0 190 289 39 0 chr4 67300406 67300458 -135027889 + L2 LINE L2 3202 3255 -17 189 213 0 0 chr4 67300556 67300603 -135027744 + (TA)n Simple_repeat Simple_repeat 2 48 0 25 0 0 0 chr4 67300945 67300970 -135027377 + AT_rich Low_complexity Low_complexity 1 25 0 7627 21 6 0 chr4 67301392 67302831 -135025516 + L1PA3 LINE L1 4712 6155 0 30 83 0 0 chr4 67302860 67302932 -135025415 + AT_rich Low_complexity Low_complexity 1 72 0 630 211 0 0 chr4 67303328 67303442 -135024905 - MLT2C2 LTR ERVL -160 304 191 7042 53 14 0 chr4 67303447 67304422 -135023925 - L1PA5 LINE L1 0 6154 5179 240 161 0 0 chr4 67304798 67304860 -135023487 + GA-rich Low_complexity Low_complexity 2 63 0 244 241 0 0 chr4 67304889 67304947 -135023400 + (TAA)n Simple_repeat Simple_repeat 1 58 0 646 193 23 6 chr4 67305431 67305607 -135022740 + MER53 DNA DNA 11 189 0 231 265 73 0 chr4 67305794 67305862 -135022485 + L2 LINE L2 3156 3228 -44 221 293 35 0 chr4 67305967 67306025 -135022322 - MIR SINE MIR 0 262 203 25 51 0 0 chr4 67306258 67306297 -135022050 + AT_rich Low_complexity Low_complexity 1 39 0 2626 57 3 0 chr4 67306750 67307084 -135021263 - L1PA5 LINE L1 -4 6150 5816 195 277 21 0 chr4 67307084 67307131 -135021216 - MIR SINE MIR -159 103 56 33 0 0 0 chr4 67308904 67308937 -135019410 + AT_rich Low_complexity Low_complexity 1 33 0 35 54 0 0 chr4 67309430 67309486 -135018861 + AT_rich Low_complexity Low_complexity 1 56 0 923 307 71 86 chr4 67309611 67310664 -135017683 - L2 LINE L2 0 3313 2291 23 33 0 0 chr4 67311565 67311595 -135016752 + AT_rich Low_complexity Low_complexity 1 30 0 29 47 0 0 chr4 67312400 67312443 -135015904 + AT_rich Low_complexity Low_complexity 1 43 0 284 250 24 36 chr4 67312958 67313042 -135015305 - MLT2C2 LTR ERVL -503 125 43 224 231 19 0 chr4 67313438 67313490 -135014857 + (CA)n Simple_repeat Simple_repeat 2 54 0 398 230 44 26 chr4 67313797 67313910 -135014437 - ERVL LTR ERVL -1250 4514 4400 678 308 136 40 chr4 67314021 67314417 -135013930 + L1M4b LINE L1 132 565 -6294 491 217 63 42 chr4 67314512 67314701 -135013646 + L1MB8 LINE L1 4911 5103 -1043 5223 166 30 26 chr4 67314701 67316325 -135012022 - L1PA16 LINE L1 -7 6159 4543 1168 227 35 13 chr4 67316333 67316650 -135011697 - L1 LINE L1 -2368 3778 3455 * 2820 236 40 39 chr4 67316649 67316799 -135011548 + L1MB8 LINE L1 5101 5249 -929 220 27 54 0 chr4 67316799 67316836 -135011511 + (TCTA)n Simple_repeat Simple_repeat 3 41 0 524 232 16 0 chr4 67316840 67316965 -135011382 - FLAM_C SINE Alu -6 127 1 2820 236 40 39 chr4 67316965 67317880 -135010467 + L1MB8 LINE L1 5251 6177 -1 1087 323 89 23 chr4 67317900 67319074 -135009273 - ERVL LTR ERVL -1357 4407 3116 468 0 0 0 chr4 67319325 67319377 -135008970 + (TA)n Simple_repeat Simple_repeat 2 53 0 22 35 0 0 chr4 67319715 67319744 -135008603 + AT_rich Low_complexity Low_complexity 1 29 0 795 219 6 18 chr4 67319800 67319969 -135008378 - AluJb SINE Alu -4 308 142 1763 203 37 81 chr4 67322312 67322820 -135005527 - MER66B LTR ERV1 0 486 1 27 73 0 0 chr4 67322880 67322935 -135005412 + AT_rich Low_complexity Low_complexity 1 55 0 436 280 9 0 chr4 67323373 67323480 -135004867 + MER58A DNA MER1_type 3 110 0 * 2003 120 66 29 chr4 67323468 67323480 -135004867 - THE1B LTR MaLR -1 431 421 2139 120 48 28 chr4 67323480 67323837 -135004510 - THE1B LTR MaLR 0 364 1 9625 103 22 93 chr4 67323837 67325538 -135002809 - THE1B-int LTR MaLR 0 1580 2 2003 120 66 29 chr4 67325538 67325875 -135002472 - THE1B LTR MaLR -10 422 1 311 214 0 43 chr4 67325893 67325963 -135002384 + MER58A DNA MER1_type 151 217 -7 572 233 0 23 chr4 67326369 67326498 -135001849 - FRAM SINE Alu -13 163 38 997 57 34 23 chr4 67326589 67326766 -135001581 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 406 210 0 0 chr4 67326770 67326851 -135001496 - FLAM_C SINE Alu -27 116 36 414 57 0 0 chr4 67328001 67328013 -135000334 + (CA)n Simple_repeat Simple_repeat 1 65 0 414 57 0 0 chr4 67328013 67328066 -135000281 + (CA)n Simple_repeat Simple_repeat 2 54 0 315 0 0 0 chr4 67330809 67330844 -134997503 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 499 308 52 19 chr4 67331398 67331609 -134996738 - MIR SINE MIR -1 261 44 219 36 0 0 chr4 67331730 67331758 -134996589 + (CA)n Simple_repeat Simple_repeat 2 29 0 1765 112 4 16 chr4 67331801 67332059 -134996288 - AluSx SINE Alu -57 255 1 25 51 0 0 chr4 67332769 67332808 -134995539 + AT_rich Low_complexity Low_complexity 1 39 0 23 78 0 0 chr4 67332897 67332948 -134995399 + AT_rich Low_complexity Low_complexity 1 51 0 216 67 0 0 chr4 67334178 67334208 -134994139 + (TA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr4 67334978 67334999 -134993348 + AT_rich Low_complexity Low_complexity 1 21 0 267 308 58 17 chr4 67334999 67335171 -134993176 + L1ME LINE L1 5681 5859 -311 22 0 0 0 chr4 67335651 67335673 -134992674 + AT_rich Low_complexity Low_complexity 1 22 0 1123 292 83 39 chr4 67335954 67336801 -134991546 + L1ME3A LINE L1 5286 6169 -1 465 290 70 14 chr4 67336885 67337099 -134991248 + L1ME1 LINE L1 1685 1910 -4486 407 295 122 12 chr4 67337134 67337388 -134990959 + L1ME1 LINE L1 2003 2284 -4112 1094 252 26 14 chr4 67337390 67337735 -134990612 + L1ME1 LINE L1 2278 2626 -3589 1263 161 244 34 chr4 67337735 67338088 -134990259 - MSTA LTR MaLR -1 427 1 408 221 0 32 chr4 67338094 67338189 -134990158 - L1PA12 LINE L1 -4511 3070 2979 * 8746 151 12 44 chr4 67338187 67339801 -134988546 - MSTA-int LTR MaLR -9 1571 10 1618 142 200 11 chr4 67339807 67340167 -134988180 - MSTA LTR MaLR 0 428 1 684 237 77 61 chr4 67340167 67340479 -134987868 + L1ME1 LINE L1 2622 2938 -3277 2371 263 49 12 chr4 67340625 67341634 -134986713 + L1ME1 LINE L1 5197 6403 0 1542 191 29 37 chr4 67342113 67342491 -134985856 - THE1C LTR MaLR 0 375 1 9156 135 29 43 chr4 67342491 67344092 -134984255 - THE1C-int LTR MaLR 0 1580 3 1551 169 64 36 chr4 67344098 67344459 -134983888 - THE1C LTR MaLR -4 371 1 27 29 0 0 chr4 67344969 67345003 -134983344 + AT_rich Low_complexity Low_complexity 1 34 0 3589 37 0 0 chr4 67345003 67345433 -134982914 - L1PA5 LINE L1 -7 6147 5718 430 247 0 11 chr4 67345807 67345896 -134982451 + Tigger2 DNA MER2_type 2631 2718 0 405 0 0 0 chr4 67345927 67345972 -134982375 + (CA)n Simple_repeat Simple_repeat 2 46 0 1868 131 0 52 chr4 67346514 67346819 -134981528 - AluSq SINE Alu -24 289 1 22 70 0 0 chr4 67347578 67347621 -134980726 + AT_rich Low_complexity Low_complexity 1 43 0 186 133 0 0 chr4 67347738 67347768 -134980579 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 21 0 0 0 chr4 67348748 67348769 -134979578 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 67348856 67348886 -134979461 + AT_rich Low_complexity Low_complexity 1 30 0 10737 188 22 10 chr4 67349175 67351145 -134977202 + ERVL LTR ERVL 2252 4245 -1519 203 182 40 50 chr4 67351192 67351291 -134977056 + (TTATA)n Simple_repeat Simple_repeat 3 100 0 1303 215 92 6 chr4 67351291 67351607 -134976740 - MLT2C1 LTR ERVL -54 343 1 21 71 0 0 chr4 67351755 67351797 -134976550 + AT_rich Low_complexity Low_complexity 1 42 0 1959 291 116 42 chr4 67351846 67351955 -134976392 - L1MEc LINE L1 -4413 1983 1884 2422 81 3 0 chr4 67351955 67352262 -134976085 - AluSp SINE Alu -5 308 1 1959 291 116 42 chr4 67352262 67353170 -134975177 - L1MEc LINE L1 -4512 1884 1045 206 62 31 0 chr4 67353170 67353202 -134975145 + (TA)n Simple_repeat Simple_repeat 1 33 0 1959 291 116 42 chr4 67353202 67353984 -134974363 - L1MEc LINE L1 -5351 1045 49 25 70 0 14 chr4 67354776 67354806 -134973541 + AT_rich Low_complexity Low_complexity 1 30 -40 964 191 183 34 chr4 67354806 67355068 -134973279 - AluJo SINE Alu 0 302 2 25 70 0 14 chr4 67355068 67355108 -134973239 + AT_rich Low_complexity Low_complexity 30 70 0 31 26 0 0 chr4 67355151 67355189 -134973158 + AT_rich Low_complexity Low_complexity 1 38 0 3815 280 106 4 chr4 67356210 67356913 -134971434 + L1MDa LINE L1 19 649 -5891 2139 92 48 0 chr4 67356913 67357031 -134971316 + AluY SINE Alu 1 112 -199 305 24 24 0 chr4 67357031 67357073 -134971274 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2139 92 48 0 chr4 67357073 67357249 -134971098 + AluY SINE Alu 112 309 -2 3815 280 106 4 chr4 67357249 67357912 -134970435 + L1MDa LINE L1 649 1524 -5016 3971 192 46 37 chr4 67357913 67358945 -134969402 + L1MD1 LINE L1 5161 6207 -35 278 141 0 16 chr4 67358975 67359039 -134969308 + (TA)n Simple_repeat Simple_repeat 1 63 0 478 292 89 25 chr4 67359567 67359769 -134968578 + MIR SINE MIR 48 262 0 183 314 0 0 chr4 67362191 67362242 -134966105 + L2 LINE L2 3219 3269 -3 246 281 0 42 chr4 67363371 67363467 -134964880 + MLT2F LTR ERVL 531 622 -41 222 37 0 0 chr4 67365134 67365161 -134963186 + (TA)n Simple_repeat Simple_repeat 2 28 0 287 323 54 36 chr4 67365168 67365335 -134963012 - L2 LINE L2 -1333 1981 1812 211 350 112 56 chr4 67365457 67365609 -134962738 - L2 LINE L2 -1641 1673 1531 4135 174 61 8 chr4 67365609 67366362 -134961985 - MER54B LTR ERVL 0 793 1 211 350 112 56 chr4 67366362 67366495 -134961852 - L2 LINE L2 -1783 1531 1372 220 336 136 42 chr4 67366557 67366771 -134961576 - L2 LINE L2 -2074 1240 1007 466 358 57 29 chr4 67367166 67367585 -134960762 + LTR16A LTR ERVL 14 444 -6 301 286 51 0 chr4 67367617 67367715 -134960632 + HERV16 LTR ERVL 13 115 -4881 569 360 51 26 chr4 67367897 67368364 -134959983 + HERV16 LTR ERVL 336 814 -4182 6098 185 84 11 chr4 67368448 67369905 -134958442 + L1M4c LINE L1 720 2283 -4101 1381 352 44 21 chr4 67369953 67370808 -134957539 + HERV16 LTR ERVL 2199 3073 -1923 426 319 62 19 chr4 67371646 67371856 -134956491 - L1MCc LINE L1 -5134 1289 1071 229 290 28 48 chr4 67372395 67372540 -134955807 - L1MCc LINE L1 -6018 405 264 10811 192 27 31 chr4 67373005 67375888 -134952459 + L1MA3 LINE L1 74 3307 -4258 204 97 0 0 chr4 67375888 67375919 -134952428 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 10811 192 27 31 chr4 67375919 67375950 -134952397 + L1MA3 LINE L1 3307 3337 -4228 453 133 0 0 chr4 67375950 67376025 -134952322 + AluS SINE Alu 233 307 -5 1224 223 14 3 chr4 67376026 67376317 -134952030 + L1MA3 LINE L1 4690 4983 -2582 * 5806 161 36 23 chr4 67376316 67376516 -134951831 + L1MA3 LINE L1 6393 6589 -1135 218 81 27 0 chr4 67376516 67376553 -134951794 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5806 161 36 23 chr4 67376553 67376939 -134951408 + L1MA3 LINE L1 6589 6968 -756 1323 194 68 32 chr4 67376939 67377079 -134951268 + AluJb SINE Alu 1 135 -177 1864 99 0 16 chr4 67377079 67377331 -134951016 + AluY SINE Alu 51 298 -13 1323 194 68 32 chr4 67377331 67377469 -134950878 + AluJb SINE Alu 135 289 -23 5806 161 36 23 chr4 67377469 67378136 -134950211 + L1MA3 LINE L1 6968 7688 -36 1869 128 39 4 chr4 67378136 67378417 -134949930 + AluSx SINE Alu 1 291 -21 5806 161 36 23 chr4 67378417 67378455 -134949892 + L1MA3 LINE L1 7688 7724 0 322 270 135 88 chr4 67378459 67378674 -134949673 - L1MC4 LINE L1 -270 7772 7548 484 302 79 0 chr4 67378765 67378824 -134949523 - MER3 DNA MER1_type -4 205 152 180 0 0 0 chr4 67378824 67378844 -134949503 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 484 302 79 0 chr4 67378844 67378973 -134949374 - MER3 DNA MER1_type -57 152 2 473 349 41 38 chr4 67379163 67379507 -134948840 - MLT1J LTR MaLR -161 350 6 4864 173 42 23 chr4 67381419 67382821 -134945526 - L1PA16 LINE L1 0 6166 4745 3415 203 48 4 chr4 67382813 67383608 -134944739 + L1M1 LINE L1 5221 6050 -1515 * 28 29 0 0 chr4 67384396 67384431 -134943916 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr4 67384505 67384532 -134943815 + AT_rich Low_complexity Low_complexity 1 27 0 239 197 184 0 chr4 67385569 67385645 -134942702 - LTR52 LTR ERVL -3 418 329 886 248 13 22 chr4 67385645 67385871 -134942476 - LTR52 LTR ERVL -197 224 1 432 250 32 32 chr4 67386029 67386153 -134942194 + LTR52 LTR ERVL 67 190 -231 233 322 0 23 chr4 67386737 67386914 -134941433 + T-rich Low_complexity Low_complexity 4 176 0 2179 178 33 21 chr4 67386916 67387337 -134941010 + MSTB LTR MaLR 1 426 0 192 77 0 0 chr4 67387737 67387763 -134940584 + (T)n Simple_repeat Simple_repeat 1 26 0 360 251 30 48 chr4 67387789 67388020 -134940327 - L1MC5 LINE L1 -205 7756 7530 1462 33 11 0 chr4 67388040 67388220 -134940127 - L1PA4 LINE L1 0 6155 5974 6384 207 31 52 chr4 67388320 67389402 -134938945 - L1P4 LINE L1 -671 6198 5181 372 43 0 0 chr4 67389402 67389448 -134938899 + (TG)n Simple_repeat Simple_repeat 2 47 0 6384 207 31 52 chr4 67389448 67390423 -134937924 - L1P4 LINE L1 -1688 5181 4187 814 307 8 0 chr4 67390423 67390687 -134937660 - L1 LINE L1 -3381 2765 2500 5957 220 23 14 chr4 67390693 67392643 -134935704 - L1P4 LINE L1 -4944 1905 282 25704 142 41 77 chr4 67392746 67393975 -134934372 + L1P3 LINE L1 1 1273 -4899 201 39 0 0 chr4 67393975 67394001 -134934346 + (CAA)n Simple_repeat Simple_repeat 2 27 0 25704 142 41 77 chr4 67394001 67395440 -134932907 + L1P3 LINE L1 1273 2762 -3410 381 174 4 22 chr4 67395440 67395523 -134932824 + AluSg/x SINE Alu 139 190 -110 25704 142 41 77 chr4 67395523 67397675 -134930672 + L1P3 LINE L1 2762 4640 -1532 2190 104 3 20 chr4 67397675 67397974 -134930373 + AluSx SINE Alu 2 295 -17 25704 142 41 77 chr4 67397974 67399064 -134929283 + L1P3 LINE L1 4640 5768 -404 5689 89 79 0 chr4 67399165 67400457 -134927890 + L1PA8 LINE L1 4837 6172 0 406 289 54 7 chr4 67400658 67400807 -134927540 + MIR SINE MIR 8 163 -99 23 0 0 0 chr4 67400817 67400840 -134927507 + AT_rich Low_complexity Low_complexity 1 23 0 31 58 0 0 chr4 67401109 67401161 -134927186 + AT_rich Low_complexity Low_complexity 1 52 0 668 361 24 38 chr4 67401401 67401853 -134926494 + MLT2F LTR ERVL 218 663 0 21 0 0 0 chr4 67403316 67403337 -134925010 + AT_rich Low_complexity Low_complexity 1 21 0 2151 148 43 6 chr4 67404104 67404455 -134923892 - THE1B LTR MaLR 0 364 1 10621 130 2 4 chr4 67404455 67406037 -134922310 - THE1B-int LTR MaLR 0 1580 1 1910 186 39 14 chr4 67406037 67406392 -134921955 - THE1B LTR MaLR 0 364 1 1153 237 113 91 chr4 67406551 67407188 -134921159 - MLT1E1 LTR MaLR -3 651 1 1672 176 30 49 chr4 67407369 67407805 -134920542 - THE1C LTR MaLR -2 426 1 21 36 0 0 chr4 67408414 67408442 -134919905 + AT_rich Low_complexity Low_complexity 1 28 0 1828 173 0 6 chr4 67408450 67408762 -134919585 + AluSx SINE Alu 1 310 -2 227 239 18 61 chr4 67409012 67409175 -134919172 + T-rich Low_complexity Low_complexity 2 157 0 22 35 0 0 chr4 67409475 67409504 -134918843 + AT_rich Low_complexity Low_complexity 1 29 0 873 230 22 0 chr4 67409981 67410159 -134918188 - L1PA16 LINE L1 -9 6157 5976 579 107 0 0 chr4 67410259 67410351 -134917996 - L1PA16 LINE L1 -202 5972 5881 3668 178 12 12 chr4 67410353 67411126 -134917221 + L1PA16 LINE L1 5056 5832 -334 1874 142 155 11 chr4 67411126 67411500 -134916847 - MSTA LTR MaLR 0 428 1 3668 178 12 12 chr4 67411500 67411558 -134916789 + L1PA16 LINE L1 5832 5888 -278 23 54 0 0 chr4 67412501 67412538 -134915809 + AT_rich Low_complexity Low_complexity 1 37 0 2233 122 0 0 chr4 67412951 67413254 -134915093 - AluSx SINE Alu -9 303 1 3713 165 24 99 chr4 67413503 67414414 -134913933 + Tigger1 DNA MER2_type 2 844 -1574 645 123 9 9 chr4 67414411 67414525 -134913822 + Tigger1 DNA MER2_type 2170 2283 -135 * 278 116 0 0 chr4 67415145 67415188 -134913159 - L1MC/D LINE L1 -468 5865 5823 1346 201 0 0 chr4 67415188 67415427 -134912920 - AluSx SINE Alu -11 301 63 493 253 32 32 chr4 67415520 67415678 -134912669 - MER52A LTR ERV1 0 1755 1598 782 258 23 148 chr4 67415680 67416118 -134912229 - MER52A LTR ERV1 -284 1471 1089 924 219 57 70 chr4 67416133 67416361 -134911986 - MER52A LTR ERV1 -864 891 667 1349 156 17 4 chr4 67416367 67416598 -134911749 - MER52A-int LTR ERV1 0 7091 6858 1855 192 34 58 chr4 67416598 67417107 -134911240 + MLT2A2 LTR ERVL 1 516 -38 546 16 0 0 chr4 67417107 67417170 -134911177 + (TA)n Simple_repeat Simple_repeat 2 64 0 1855 192 34 58 chr4 67417170 67417209 -134911138 + MLT2A2 LTR ERVL 516 554 0 30025 127 12 6 chr4 67417209 67421667 -134906680 + HERVL-A2-A2 LTR ERVL 1 4486 -1168 5000 114 12 11 chr4 67421767 67422505 -134905842 + HERVL-A2-A2 LTR ERVL 4754 5492 -162 361 75 0 0 chr4 67422505 67422558 -134905789 - L1PA4 LINE L1 0 6155 6103 16457 33 6 1 chr4 67422572 67424593 -134903754 - L1P LINE L1 -896 5250 3221 854 204 0 0 chr4 67424593 67424765 -134903582 + HERVL-A2-A2 LTR ERVL 5483 5654 0 1894 189 46 41 chr4 67424765 67425311 -134903036 + MLT2A2 LTR ERVL 1 554 0 24366 189 46 52 chr4 67425311 67427284 -134901063 - MER52A-int LTR ERV1 -229 6862 4878 278 68 23 0 chr4 67427284 67427328 -134901019 - MADE1 DNA Mariner -35 45 1 24366 189 46 52 chr4 67427328 67428832 -134899515 - MER52A-int LTR ERV1 -2213 4878 3366 1560 215 0 0 chr4 67428832 67429148 -134899199 - AluYb8 SINE Alu 0 318 3 24366 189 46 52 chr4 67429148 67431389 -134896958 - MER52A-int LTR ERV1 -3725 3366 926 2587 155 12 2 chr4 67431425 67431832 -134896515 - MER52A-int LTR ERV1 -6203 888 478 405 0 0 0 chr4 67431835 67431880 -134896467 + (TG)n Simple_repeat Simple_repeat 2 46 0 2739 99 99 11 chr4 67431888 67432324 -134896023 + MER9 LTR ERVK 38 511 0 1805 171 3 0 chr4 67432325 67432617 -134895730 - MER52A-int LTR ERV1 -6630 461 169 453 335 0 6 chr4 67432782 67432943 -134895404 - MER52A LTR ERV1 0 1755 1596 * 997 219 100 92 chr4 67432918 67433595 -134894752 - MER52A LTR ERV1 -270 1485 663 459 136 0 0 chr4 67433598 67433664 -134894683 - AluS SINE Alu -247 66 1 1215 204 23 0 chr4 67433794 67434010 -134894337 - L1PA15-16 LINE L1 -6624 225 5 1818 243 38 20 chr4 67434010 67434516 -134893831 + LTR49-int LTR ERV1 2965 3479 -2852 347 282 0 15 chr4 67434515 67434646 -134893701 + LTR49-int LTR ERV1 2815 2943 -1937 * 2638 183 64 43 chr4 67434683 67435400 -134892947 + LTR49-int LTR ERV1 4166 4897 -3223 889 168 30 0 chr4 67435397 67435564 -134892783 + LTR49-int LTR ERV1 4492 4663 -1668 * 1842 154 13 10 chr4 67435563 67435874 -134892473 + LTR49-int LTR ERV1 5037 5348 -983 42467 37 21 1 chr4 67435874 67441906 -134886441 - L1PA2 LINE L1 0 6155 1 752 227 32 0 chr4 67441908 67442093 -134886254 + LTR49-int LTR ERV1 5342 5532 -799 * 3599 175 30 4 chr4 67442091 67442766 -134885581 + LTR49-int LTR ERV1 5637 6328 -3 2149 202 117 8 chr4 67442777 67443297 -134885050 + LTR49 LTR ERV1 9 585 -10 37 0 0 0 chr4 67443534 67443571 -134884776 + AT_rich Low_complexity Low_complexity 1 37 0 7908 209 94 44 chr4 67443679 67444501 -134883846 + L1MCa LINE L1 27 807 -5619 252 0 0 0 chr4 67444501 67444529 -134883818 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 7908 209 94 44 chr4 67444529 67446095 -134882252 + L1MCa LINE L1 807 2534 -3892 1155 142 5 0 chr4 67446102 67446292 -134882055 + Tigger1 DNA MER2_type 821 1011 -1407 782 243 62 4 chr4 67446295 67446562 -134881785 + L1MCa LINE L1 2566 2835 -3591 10603 186 42 3 chr4 67446562 67448658 -134879689 + Tigger1 DNA MER2_type 242 2418 0 6572 235 32 33 chr4 67448659 67450536 -134877811 + L1MCa LINE L1 2938 4814 -1612 3839 93 32 47 chr4 67450536 67451151 -134877196 + LTR14B LTR ERVK 3 608 0 6572 235 32 33 chr4 67451151 67451565 -134876782 + L1MCa LINE L1 4814 5227 -1199 213 125 0 25 chr4 67451799 67451839 -134876508 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 249 299 37 9 chr4 67451882 67451989 -134876358 + L1MEc LINE L1 2395 2504 -3892 33 0 0 0 chr4 67452228 67452261 -134876086 + AT_rich Low_complexity Low_complexity 1 33 0 205 341 58 40 chr4 67452994 67453167 -134875180 - L2 LINE L2 -2536 778 603 24 0 0 0 chr4 67453516 67453540 -134874807 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 67455221 67455242 -134873105 + AT_rich Low_complexity Low_complexity 1 21 0 3261 202 37 20 chr4 67455466 67456268 -134872079 + L1MA9 LINE L1 5477 6292 -20 33 80 0 0 chr4 67456560 67456635 -134871712 + AT_rich Low_complexity Low_complexity 1 75 0 24 32 0 0 chr4 67456922 67456953 -134871394 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 67457099 67457120 -134871227 + AT_rich Low_complexity Low_complexity 1 21 0 25 75 0 0 chr4 67457172 67457225 -134871122 + AT_rich Low_complexity Low_complexity 1 53 0 467 303 49 7 chr4 67457305 67457447 -134870900 - MIR SINE MIR -31 231 84 393 58 0 0 chr4 67458813 67458865 -134869482 + (TA)n Simple_repeat Simple_repeat 1 52 0 337 188 150 0 chr4 67458865 67458945 -134869402 - THE1A LTR MaLR -3 352 261 192 40 0 0 chr4 67458945 67458970 -134869377 + (TA)n Simple_repeat Simple_repeat 1 25 0 1241 185 124 37 chr4 67458970 67459310 -134869037 - THE1C LTR MaLR -3 372 5 476 349 18 66 chr4 67459324 67459780 -134868567 + HAL1b LINE L1 219 652 -696 21 0 0 0 chr4 67459791 67459812 -134868535 + AT_rich Low_complexity Low_complexity 1 21 0 222 256 16 24 chr4 67459879 67460004 -134868343 + (TAAA)n Simple_repeat Simple_repeat 3 126 0 231 36 0 0 chr4 67460283 67460311 -134868036 + (T)n Simple_repeat Simple_repeat 1 28 0 663 277 71 21 chr4 67510575 67510954 -134817393 + L1MC3 LINE L1 4330 4727 -1419 2137 226 39 7 chr4 67510962 67511524 -134816823 + L1MC3 LINE L1 5304 5883 -1902 35415 113 13 20 chr4 67511603 67518319 -134810028 + L1PA6 LINE L1 11 6154 0 1965 134 7 0 chr4 67519636 67519957 -134808390 + AluSx SINE Alu 1 323 0 616 116 0 0 chr4 67521297 67521383 -134806964 + AluY SINE Alu 1 86 -224 622 119 10 0 chr4 67521385 67521486 -134806861 - L1PB4 LINE L1 -248 5908 5807 1655 133 76 4 chr4 67521491 67521755 -134806592 - THE1C LTR MaLR 0 375 93 390 283 56 57 chr4 67521890 67522082 -134806265 - L1M4c LINE L1 -4828 1735 1544 183 100 0 0 chr4 67522082 67522112 -134806235 + (TG)n Simple_repeat Simple_repeat 1 30 0 390 283 56 57 chr4 67522112 67522440 -134805907 - L1M4c LINE L1 -5019 1544 1062 201 122 49 0 chr4 67523495 67523536 -134804811 + (TA)n Simple_repeat Simple_repeat 2 44 0 2251 92 3 0 chr4 67523650 67523944 -134804403 + AluSx SINE Alu 1 295 -17 23 54 0 0 chr4 67524134 67524171 -134804176 + AT_rich Low_complexity Low_complexity 1 37 0 3908 119 2 0 chr4 67524179 67524760 -134803587 - L1PA13 LINE L1 0 6163 5582 31 26 0 0 chr4 67525170 67525208 -134803139 + AT_rich Low_complexity Low_complexity 1 38 0 240 166 76 7 chr4 67525486 67525631 -134802716 + (TA)n Simple_repeat Simple_repeat 1 155 0 33 25 0 0 chr4 67525661 67525701 -134802646 + AT_rich Low_complexity Low_complexity 1 40 0 214 309 56 56 chr4 67526876 67527002 -134801345 + L2 LINE L2 3187 3312 -1 22 35 0 0 chr4 67527087 67527116 -134801231 + AT_rich Low_complexity Low_complexity 1 29 0 25 83 0 0 chr4 67527702 67527762 -134800585 + AT_rich Low_complexity Low_complexity 1 60 0 381 141 0 0 chr4 67528158 67528229 -134800118 + (GA)n Simple_repeat Simple_repeat 2 72 0 1997 113 7 3 chr4 67528517 67528801 -134799546 - AluSx SINE Alu -27 285 1 1088 332 73 30 chr4 67528892 67529537 -134798810 + L1M2 LINE L1 780 1452 -6114 230 139 0 0 chr4 67529932 67529968 -134798379 + L1M2 LINE L1 3357 3392 -4174 * 7201 223 49 48 chr4 67529936 67531849 -134796498 + L1MA6 LINE L1 3034 4964 -2601 1534 45 0 10 chr4 67531849 67532050 -134796297 - L1PA5 LINE L1 -6 6148 5950 7201 223 49 48 chr4 67532050 67532691 -134795656 + L1MA6 LINE L1 4964 5603 -1962 3364 193 76 38 chr4 67532685 67533199 -134795148 + L1MA6 LINE L1 6805 7298 -421 * 306 87 0 0 chr4 67533199 67533245 -134795102 + (TG)n Simple_repeat Simple_repeat 1 46 0 207 0 0 0 chr4 67533244 67533267 -134795080 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 3364 193 76 38 chr4 67533245 67533529 -134794818 + L1MA6 LINE L1 7298 7618 -101 2343 82 0 3 chr4 67533529 67533833 -134794514 + AluY SINE Alu 1 303 -8 3364 193 76 38 chr4 67533833 67533914 -134794433 + L1MA6 LINE L1 7618 7695 -24 3737 122 2 15 chr4 67535141 67535733 -134792614 + L1PA11 LINE L1 5587 6170 -4 257 271 39 50 chr4 67536433 67536614 -134791733 + L1MC/D LINE L1 5704 5882 -1926 233 220 51 59 chr4 67536791 67536909 -134791438 - L1ME4a LINE L1 -11 6110 5994 22 35 0 0 chr4 67537311 67537340 -134791007 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr4 67538565 67538605 -134789742 + AT_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr4 67539710 67539730 -134788617 + (A)n Simple_repeat Simple_repeat 1 20 0 348 266 126 35 chr4 67540291 67540490 -134787857 - HAL1 LINE L1 -1164 1343 1127 265 271 43 0 chr4 67541107 67541177 -134787170 + MER5A DNA MER1_type 39 111 -78 269 246 83 40 chr4 67541304 67541445 -134786902 - MLT1F LTR MaLR 0 542 406 288 0 0 0 chr4 67542354 67542386 -134785961 + (CA)n Simple_repeat Simple_repeat 2 33 0 341 239 80 0 chr4 67543374 67543462 -134784885 - L2 LINE L2 -40 3273 3179 210 147 44 44 chr4 67544731 67544799 -134783548 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 238 323 79 0 chr4 67544899 67545026 -134783321 - MLT1J LTR MaLR -45 466 330 528 309 43 19 chr4 67545296 67545503 -134782844 - LTR16C LTR ERVL -148 343 132 276 328 25 8 chr4 67546343 67546465 -134781882 + MIR SINE MIR 123 246 -16 2887 216 4 0 chr4 67546618 67547150 -134781197 + L1MA3 LINE L1 71 604 -6961 * 6472 217 38 10 chr4 67547149 67547783 -134780564 + L1MA3 LINE L1 4448 5062 -2503 2273 78 7 0 chr4 67547783 67548092 -134780255 + AluY SINE Alu 1 311 0 6472 217 38 10 chr4 67548092 67549018 -134779329 + L1MA3 LINE L1 5062 6053 -1512 2049 154 8 11 chr4 67549025 67549381 -134778966 + THE1A LTR MaLR 1 355 0 10652 126 5 0 chr4 67549381 67550953 -134777394 + THE1A-int LTR MaLR 1 1579 -1 1869 134 16 10 chr4 67550953 67551259 -134777088 + THE1A LTR MaLR 1 308 -47 419 143 0 0 chr4 67551274 67551337 -134777010 - THE1-int LTR MaLR -1006 574 512 247 182 0 0 chr4 67551337 67551381 -134776966 + THE1A LTR MaLR 312 355 0 2708 196 30 0 chr4 67551421 67551996 -134776351 + L1MA3 LINE L1 6100 6691 -874 333 273 23 0 chr4 67552023 67552111 -134776236 - L1MC4 LINE L1 -1339 6703 6614 6015 139 28 0 chr4 67552113 67553107 -134775240 + L1MA3 LINE L1 6698 7719 -5 207 0 0 0 chr4 67553801 67553824 -134774523 + (TG)n Simple_repeat Simple_repeat 2 24 0 474 352 40 24 chr4 67553993 67554246 -134774101 - L2 LINE L2 -529 2785 2529 508 250 21 78 chr4 67554431 67554623 -134773724 - MLT1J2 LTR MaLR -238 212 32 24 0 0 0 chr4 67555343 67555367 -134772980 + AT_rich Low_complexity Low_complexity 1 24 0 290 144 11 33 chr4 67555618 67555708 -134772639 + (TA)n Simple_repeat Simple_repeat 2 89 0 336 110 24 12 chr4 67555734 67555816 -134772531 + (TA)n Simple_repeat Simple_repeat 1 83 0 5588 110 41 3 chr4 67556766 67557871 -134770476 + L1PA14 LINE L1 5026 6161 0 21 36 0 0 chr4 67558731 67558759 -134769588 + AT_rich Low_complexity Low_complexity 1 28 0 499 344 139 36 chr4 67559515 67560097 -134768250 + L2 LINE L2 2130 2771 -543 2023 118 46 52 chr4 67560102 67560468 -134767879 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr4 67560794 67560816 -134767531 + AT_rich Low_complexity Low_complexity 1 22 0 1464 252 35 0 chr4 67561728 67562073 -134766274 - MLT1A1 LTR MaLR -8 357 1 204 149 0 0 chr4 67562152 67562199 -134766148 + (TA)n Simple_repeat Simple_repeat 1 47 0 26 0 0 0 chr4 67562216 67562242 -134766105 + AT_rich Low_complexity Low_complexity 1 26 0 2319 76 0 0 chr4 67562650 67562941 -134765406 + AluY SINE Alu 1 291 -20 25 51 0 0 chr4 67563107 67563146 -134765201 + AT_rich Low_complexity Low_complexity 1 39 0 475 122 98 0 chr4 67563680 67563762 -134764585 - MER41A LTR ERV1 -82 472 383 396 269 60 89 chr4 67563870 67564085 -134764262 - MIR SINE MIR -31 231 23 21 0 0 0 chr4 67564085 67564106 -134764241 + AT_rich Low_complexity Low_complexity 1 21 0 248 247 100 53 chr4 67564411 67564561 -134763786 + MLT1K LTR MaLR 405 561 -27 324 200 0 0 chr4 67565338 67565408 -134762939 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 258 111 0 0 chr4 67565765 67565801 -134762546 - tRNA-Gly-GGG tRNA tRNA -38 36 1 267 31 0 0 chr4 67566237 67566269 -134762078 + (TG)n Simple_repeat Simple_repeat 2 33 0 631 322 78 45 chr4 67567736 67568223 -134760124 + MLT1J LTR MaLR 2 504 -7 25 0 0 0 chr4 67569111 67569136 -134759211 + AT_rich Low_complexity Low_complexity 1 25 0 2037 114 0 54 chr4 67569719 67570052 -134758295 + THE1C LTR MaLR 4 318 -57 24 77 0 0 chr4 67570433 67570485 -134757862 + AT_rich Low_complexity Low_complexity 1 52 0 397 388 22 14 chr4 67571574 67571850 -134756497 + HERV16 LTR ERVL 1282 1559 -3437 427 350 57 33 chr4 67572023 67572323 -134756024 + HERV16 LTR ERVL 1894 2200 -3564 852 355 45 20 chr4 67572562 67573208 -134755139 + HERV16 LTR ERVL 2486 3147 -2617 3952 27 0 0 chr4 67575828 67576304 -134752043 - L1P LINE L1 -842 5304 4829 5039 16 0 0 chr4 67576304 67576880 -134751467 + L1PA2 LINE L1 5577 6152 -3 381 117 0 0 chr4 67578324 67578384 -134749963 + (TG)n Simple_repeat Simple_repeat 1 60 0 342 0 0 0 chr4 67579209 67579247 -134749100 + (CA)n Simple_repeat Simple_repeat 2 39 0 22 35 0 0 chr4 67579302 67579331 -134749016 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 67579954 67579982 -134748365 + AT_rich Low_complexity Low_complexity 1 28 0 214 226 19 0 chr4 67580093 67580146 -134748201 + (TA)n Simple_repeat Simple_repeat 2 55 0 21 0 0 0 chr4 67580245 67580266 -134748081 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 67580553 67580575 -134747772 + AT_rich Low_complexity Low_complexity 1 22 0 542 292 89 21 chr4 67581048 67581481 -134746866 + L1MC4a LINE L1 6956 7378 -470 584 295 65 22 chr4 67582371 67582774 -134745573 + L1ME3A LINE L1 5521 5940 -230 238 148 37 0 chr4 67583056 67583110 -134745237 + (CAAA)n Simple_repeat Simple_repeat 4 59 0 239 318 0 0 chr4 67583961 67584024 -134744323 - L2 LINE L2 -545 2769 2707 23 33 0 0 chr4 67584398 67584428 -134743919 + AT_rich Low_complexity Low_complexity 1 30 0 1351 248 64 10 chr4 67585039 67585430 -134742917 + MER63 DNA MER1_type 650 1061 0 196 318 48 0 chr4 67586014 67586077 -134742270 - MIR SINE MIR -111 151 86 257 283 81 10 chr4 67586197 67586296 -134742051 - MIR SINE MIR -97 165 60 14784 212 41 34 chr4 67586376 67586698 -134741649 - L1PA13 LINE L1 0 7601 7283 1970 132 25 0 chr4 67586698 67586979 -134741368 - AluSq SINE Alu -25 288 1 14784 212 41 34 chr4 67586979 67589867 -134738480 - L1PA13 LINE L1 -318 7283 4418 1968 147 3 0 chr4 67589867 67590159 -134738188 - AluSq SINE Alu -20 293 1 14784 212 41 34 chr4 67590159 67590659 -134737688 - L1PA13 LINE L1 -3183 4418 3923 447 106 0 0 chr4 67590659 67590725 -134737622 + (TA)n Simple_repeat Simple_repeat 2 67 0 14784 212 41 34 chr4 67590725 67592111 -134736236 - L1PA13 LINE L1 -3678 3923 2470 722 303 7 48 chr4 67592173 67592467 -134735880 - L1PA13 LINE L1 -5928 1653 1372 2586 224 107 20 chr4 67592676 67593320 -134735027 - MER44D DNA MER2_type 0 705 6 480 207 100 10 chr4 67593562 67593710 -134734637 - MLT1A1 LTR MaLR 0 365 210 22 0 0 0 chr4 67593723 67593745 -134734602 + AT_rich Low_complexity Low_complexity 1 22 0 635 270 63 53 chr4 67596729 67597014 -134731333 - LTR40a LTR ERVL -1 518 231 358 230 32 16 chr4 67597267 67597393 -134730954 + (CATATA)n Simple_repeat Simple_repeat 4 131 0 373 258 43 0 chr4 67597395 67597488 -134730859 - MER82 DNA MER2_type -1 652 556 226 294 21 98 chr4 67597527 67597670 -134730677 + MIR SINE MIR 20 151 -111 271 263 79 0 chr4 67597737 67597813 -134730534 - MER82 DNA MER2_type -568 85 4 336 24 0 0 chr4 67597815 67597856 -134730491 + (TG)n Simple_repeat Simple_repeat 2 42 0 1082 200 47 25 chr4 67598199 67598434 -134729913 + MLT1A1 LTR MaLR 1 240 -125 325 328 8 0 chr4 67598450 67598572 -134729775 - L1MC4a LINE L1 -395 7413 7291 1793 255 110 21 chr4 67598580 67599536 -134728811 + L1MC4 LINE L1 6809 7868 -174 24 0 0 0 chr4 67601287 67601311 -134727036 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 67604491 67604512 -134723835 + AT_rich Low_complexity Low_complexity 1 21 0 278 306 82 34 chr4 67604525 67604672 -134723675 + LTR33A LTR ERVL 32 185 -338 2131 140 46 6 chr4 67604997 67605346 -134723001 - L1P3 LINE L1 -6098 363 1 483 298 50 7 chr4 67605377 67605656 -134722691 + L1M4 LINE L1 2426 2716 -3430 238 250 0 0 chr4 67605955 67606023 -134722324 + L1M4 LINE L1 3059 3126 -3020 207 0 0 0 chr4 67606096 67606119 -134722228 + (CA)n Simple_repeat Simple_repeat 2 24 0 2267 75 0 28 chr4 67606345 67606663 -134721684 + AluY SINE Alu 1 309 -2 237 215 15 15 chr4 67606688 67606753 -134721594 + (TA)n Simple_repeat Simple_repeat 2 66 0 564 308 114 23 chr4 67606770 67607263 -134721084 + L1M4 LINE L1 3672 4249 -1897 1975 162 30 33 chr4 67607263 67607628 -134720719 + THE1B LTR MaLR 1 364 0 564 308 114 23 chr4 67607628 67607833 -134720514 + L1M4 LINE L1 4249 4434 -1712 396 290 99 26 chr4 67607849 67608064 -134720283 + MLT2F LTR ERVL 7 233 -430 387 322 91 37 chr4 67608098 67608396 -134719951 + MLT2F LTR ERVL 331 644 -19 557 310 54 12 chr4 67608538 67608780 -134719567 + ERVL LTR ERVL 4422 4673 -1091 296 294 157 17 chr4 67608823 67609180 -134719167 + L1M4 LINE L1 4627 5033 -1113 2355 281 28 26 chr4 67609206 67610003 -134718344 + L1MCb LINE L1 2 799 -5246 1758 151 167 6 chr4 67610003 67610196 -134718151 + MSTA LTR MaLR 1 161 -267 258 32 0 0 chr4 67610196 67610227 -134718120 + (TC)n Simple_repeat Simple_repeat 1 31 0 1758 151 167 6 chr4 67610227 67610398 -134717949 + MSTA LTR MaLR 161 424 -4 8191 166 17 45 chr4 67610403 67612019 -134716328 + MSTA-int LTR MaLR 3 1574 -6 1937 140 95 27 chr4 67612024 67612425 -134715922 + MSTA LTR MaLR 1 428 0 2163 222 97 40 chr4 67612443 67612525 -134715822 + L1MCb LINE L1 813 889 -5675 378 0 0 0 chr4 67612525 67612567 -134715780 + (CA)n Simple_repeat Simple_repeat 2 43 0 2163 222 97 40 chr4 67612567 67613297 -134715050 + L1MCb LINE L1 889 1576 -4988 2099 154 11 27 chr4 67613297 67613667 -134714680 - THE1B LTR MaLR 0 364 1 2163 222 97 40 chr4 67613667 67614211 -134714136 + L1MCb LINE L1 1576 2367 -4197 2010 284 69 17 chr4 67614214 67615296 -134713051 + L1MCb LINE L1 2503 3602 -2962 350 303 49 0 chr4 67615433 67615555 -134712792 - L2 LINE L2 -610 2704 2577 1025 228 53 53 chr4 67615629 67616034 -134712313 - MLT2B1 LTR ERVL -2 412 1 455 300 138 47 chr4 67616039 67616422 -134711925 - L2 LINE L2 -827 2487 2070 22 56 0 0 chr4 67618473 67618509 -134709838 + AT_rich Low_complexity Low_complexity 1 36 0 294 268 49 0 chr4 67619056 67619138 -134709209 - L2 LINE L2 -8 3305 3220 2959 134 26 28 chr4 67619854 67619922 -134708425 + MER84 LTR ERVI 2 69 -438 3352 108 63 32 chr4 67619922 67620459 -134707888 + MER41C LTR ERV1 1 554 0 2959 134 26 28 chr4 67620459 67620897 -134707450 + MER84 LTR ERVI 69 507 0 689 219 0 0 chr4 67621063 67621186 -134707161 - AluJb SINE Alu -22 290 168 968 204 10 80 chr4 67621620 67621933 -134706414 - L1MC3 LINE L1 -12 7773 7483 1500 209 219 66 chr4 67622770 67623194 -134705153 - LTR28 LTR ERV1 0 1020 662 2108 89 10 20 chr4 67623194 67623497 -134704850 - AluY SINE Alu -3 308 9 1500 209 219 66 chr4 67623497 67623926 -134704421 - LTR28 LTR ERV1 -358 662 1 181 313 157 45 chr4 67624435 67624569 -134703778 + MIR SINE MIR 8 156 -106 23 33 0 0 chr4 67624650 67624680 -134703667 + AT_rich Low_complexity Low_complexity 1 30 0 601 361 51 15 chr4 67624706 67625370 -134702977 - L2 LINE L2 -61 3252 2466 189 0 0 0 chr4 67625370 67625391 -134702956 + (GA)n Simple_repeat Simple_repeat 2 22 0 601 361 51 15 chr4 67625391 67625466 -134702881 - L2 LINE L2 -847 2466 2395 245 360 78 0 chr4 67625548 67625701 -134702646 - L2 LINE L2 -1147 2167 2003 1338 220 5 93 chr4 67625857 67626285 -134702062 - MLT1B LTR MaLR 0 390 1 1288 196 27 44 chr4 67626785 67627081 -134701266 - L1MC1 LINE L1 -6 6327 6037 402 91 0 0 chr4 67627784 67627839 -134700508 - MLT2A1 LTR ERVL 0 444 390 231 167 0 0 chr4 67627839 67627881 -134700466 + (CA)n Simple_repeat Simple_repeat 1 42 0 2759 100 2 24 chr4 67627997 67628408 -134699939 - MLT2A1 LTR ERVL -40 404 3 1999 131 0 0 chr4 67629036 67629346 -134699001 + AluSx SINE Alu 1 310 0 25 31 0 0 chr4 67631302 67631334 -134697013 + AT_rich Low_complexity Low_complexity 1 32 0 24 85 0 0 chr4 67631534 67631593 -134696754 + AT_rich Low_complexity Low_complexity 1 59 0 804 327 85 51 chr4 67632173 67632938 -134695409 + HAL1 LINE L1 91 881 -1626 21 82 0 0 chr4 67633263 67633312 -134695035 + AT_rich Low_complexity Low_complexity 1 49 0 1454 241 80 9 chr4 67633476 67633912 -134694435 + MLT1C LTR MaLR 1 467 0 481 328 79 0 chr4 67634226 67634403 -134693944 + MIR SINE MIR 8 198 -64 23 33 0 0 chr4 67634458 67634488 -134693859 + AT_rich Low_complexity Low_complexity 1 30 0 33 0 0 0 chr4 67634675 67634708 -134693639 + AT_rich Low_complexity Low_complexity 1 33 0 2269 197 14 0 chr4 67636155 67636577 -134691770 - MSTA LTR MaLR 0 428 1 192 152 0 0 chr4 67636630 67636663 -134691684 + A-rich Low_complexity Low_complexity 1 33 0 5933 187 22 7 chr4 67636670 67637780 -134690567 - MSTA-int LTR MaLR -524 1127 1 2181 169 26 9 chr4 67637780 67638201 -134690146 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr4 67638348 67638370 -134689977 + AT_rich Low_complexity Low_complexity 1 22 0 371 329 44 53 chr4 67638904 67639132 -134689215 + MIR SINE MIR 11 236 -26 22 35 0 0 chr4 67639374 67639403 -134688944 + AT_rich Low_complexity Low_complexity 1 29 0 310 274 0 19 chr4 67639497 67639603 -134688744 + CT-rich Low_complexity Low_complexity 2 105 0 27 62 0 0 chr4 67640489 67640537 -134687810 + AT_rich Low_complexity Low_complexity 1 48 0 23 68 0 0 chr4 67641329 67641373 -134686974 + AT_rich Low_complexity Low_complexity 1 44 0 1527 130 61 107 chr4 67642286 67642677 -134685670 + THE1C LTR MaLR 1 373 -2 295 325 155 37 chr4 67642731 67643054 -134685293 - L2 LINE L2 -631 2683 2323 2436 192 2 0 chr4 67643368 67643789 -134684558 - MSTB LTR MaLR -4 422 1 26 50 0 0 chr4 67644070 67644110 -134684237 + AT_rich Low_complexity Low_complexity 1 40 0 7138 171 13 8 chr4 67644119 67645404 -134682943 + HSMAR2 DNA Mariner 10 1301 -1 26 30 0 0 chr4 67645419 67645452 -134682895 + AT_rich Low_complexity Low_complexity 1 33 0 433 325 126 39 chr4 67645561 67645949 -134682398 - L1ME4a LINE L1 -267 5854 5433 22 35 0 0 chr4 67646444 67646473 -134681874 + AT_rich Low_complexity Low_complexity 1 29 0 1800 199 57 70 chr4 67646504 67647016 -134681331 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chr4 67647716 67647737 -134680610 + AT_rich Low_complexity Low_complexity 1 21 0 441 257 118 0 chr4 67647909 67648061 -134680286 + L2 LINE L2 1905 2074 -1240 3278 189 35 20 chr4 67648109 67648860 -134679487 - L1MA5 LINE L1 -6 6936 6175 2234 204 8 6 chr4 67648878 67649353 -134678994 - L1MA5 LINE L1 -1786 5002 4527 1877 197 43 57 chr4 67649348 67650160 -134678187 - L1MA5 LINE L1 -3787 3001 2027 * 2607 32 0 7 chr4 67650160 67650469 -134677878 - AluY SINE Alu -4 307 1 1877 197 43 57 chr4 67650469 67650884 -134677463 - L1MA5 LINE L1 -4761 2027 1608 * 2159 312 69 36 chr4 67650866 67651862 -134676485 - L1MA5 LINE L1 -5753 1036 8 3277 209 39 68 chr4 67651900 67653018 -134675329 - L1M1 LINE L1 -4177 3388 2303 1170 288 14 34 chr4 67653020 67653464 -134674883 - L1M1 LINE L1 -5372 2193 1759 358 242 124 20 chr4 67653469 67653622 -134674725 + L1ME1 LINE L1 3763 3931 -2215 1716 268 24 21 chr4 67653642 67654217 -134674130 + L1ME1 LINE L1 5586 6162 -4 28 29 0 0 chr4 67654225 67654260 -134674087 + AT_rich Low_complexity Low_complexity 1 35 0 1712 168 64 0 chr4 67654371 67654698 -134673649 + MER7A DNA MER2_type 1 346 0 35 0 0 0 chr4 67654700 67654735 -134673612 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr4 67654757 67654799 -134673548 + AT_rich Low_complexity Low_complexity 1 42 0 969 309 111 0 chr4 67655155 67655534 -134672813 + MLT1H LTR MaLR 1 421 -128 368 288 96 0 chr4 67655640 67655869 -134672478 + L1ME1 LINE L1 4491 4741 -1405 744 315 101 9 chr4 67655941 67656503 -134671844 + L1ME1 LINE L1 5316 5929 -237 385 305 37 6 chr4 67656524 67656688 -134671659 + L1ME1 LINE L1 5988 6156 -10 253 100 40 0 chr4 67656839 67656889 -134671458 + (ATG)n Simple_repeat Simple_repeat 2 53 0 467 249 154 35 chr4 67656929 67657098 -134671249 - MIR SINE MIR -72 190 2 2067 112 13 13 chr4 67657590 67657894 -134670453 + AluSq SINE Alu 3 306 -7 4599 214 24 23 chr4 67659452 67660540 -134667807 + L1MC1 LINE L1 5183 6278 -55 13805 50 1 0 chr4 67660540 67663035 -134665312 - L1PA5 LINE L1 -4 6150 3655 4599 214 24 23 chr4 67663035 67663092 -134665255 + L1MC1 LINE L1 6278 6333 0 32 57 0 0 chr4 67663544 67663597 -134664750 + AT_rich Low_complexity Low_complexity 1 53 0 236 354 143 20 chr4 67664621 67664915 -134663432 - L3 LINE CR1 -167 1410 1081 23 33 0 0 chr4 67665848 67665878 -134662469 + AT_rich Low_complexity Low_complexity 1 30 0 2992 103 7 1 chr4 67666165 67666876 -134661471 + L1PA8 LINE L1 4921 5634 -538 2014 88 7 26 chr4 67666876 67667170 -134661177 + L1PA8 LINE L1 5864 6163 -9 26 0 0 0 chr4 67667170 67667196 -134661151 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr4 67667842 67667885 -134660462 + AT_rich Low_complexity Low_complexity 1 43 0 2230 121 0 0 chr4 67668068 67668374 -134659973 + AluSx SINE Alu 1 306 -6 34 96 0 0 chr4 67669445 67669549 -134658798 + AT_rich Low_complexity Low_complexity 1 104 0 1247 260 68 26 chr4 67669671 67670098 -134658249 - LTR40a LTR ERVL 0 519 75 2172 101 0 16 chr4 67670154 67670470 -134657877 - AluSx SINE Alu -1 311 1 22 0 0 0 chr4 67670624 67670646 -134657701 + AT_rich Low_complexity Low_complexity 1 22 0 1982 54 84 0 chr4 67671389 67671650 -134656697 - AluY SINE Alu -6 305 23 892 301 38 35 chr4 67672315 67672713 -134655634 - L1ME3A LINE L1 -174 5996 5598 371 231 38 5 chr4 67673008 67673146 -134655201 - L1ME3A LINE L1 -2912 3234 3094 2198 81 0 10 chr4 67673183 67673480 -134654867 + AluY SINE Alu 1 294 -17 224 279 25 0 chr4 67674147 67674226 -134654121 + (CA)n Simple_repeat Simple_repeat 2 82 0 22 35 0 0 chr4 67674341 67674370 -134653977 + AT_rich Low_complexity Low_complexity 1 29 0 2190 239 48 47 chr4 67674872 67676019 -134652328 - L1MD1 LINE L1 -299 6337 5180 747 296 13 26 chr4 67676030 67676260 -134652087 - L1MD1 LINE L1 -6288 252 26 21 36 0 0 chr4 67676392 67676420 -134651927 + AT_rich Low_complexity Low_complexity 1 28 0 3554 246 20 11 chr4 67676495 67677460 -134650887 - L1MA9 LINE L1 -985 5161 4189 3330 193 65 58 chr4 67677463 67678007 -134650340 + L1MA9 LINE L1 5176 5715 -597 2014 140 0 0 chr4 67678007 67678299 -134650048 + AluSx SINE Alu 7 298 -14 3330 193 65 58 chr4 67678299 67678310 -134650037 + L1MA9 LINE L1 5715 5724 -588 5666 34 0 0 chr4 67678310 67679007 -134649340 + L1PA3 LINE L1 5466 6162 0 3330 193 65 58 chr4 67679007 67679116 -134649231 + L1MA9 LINE L1 5724 5831 -481 222 37 0 0 chr4 67679116 67679143 -134649204 + (CA)n Simple_repeat Simple_repeat 2 28 0 3330 193 65 58 chr4 67679143 67679562 -134648785 + L1MA9 LINE L1 5831 6274 -38 26 64 0 0 chr4 67679640 67679687 -134648660 + AT_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr4 67679966 67679989 -134648358 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr4 67680682 67680711 -134647636 + AT_rich Low_complexity Low_complexity 1 29 0 242 293 40 108 chr4 67680749 67680971 -134647376 + L2 LINE L2 2331 2537 -777 226 160 0 40 chr4 67681044 67681094 -134647253 - LTR66 LTR ERVL -171 439 392 395 315 47 47 chr4 67681393 67681736 -134646611 - HsTC2 DNA Tc2 -6 1892 1550 1004 197 29 0 chr4 67681738 67681946 -134646401 - L1M2 LINE L1 -658 5654 5441 863 221 175 5 chr4 67682038 67682255 -134646092 + MIR SINE MIR 9 262 0 356 291 119 7 chr4 67682916 67683067 -134645280 - MIR SINE MIR -11 251 84 1588 182 37 76 chr4 67683407 67683813 -134644534 + MLT1B LTR MaLR 1 390 0 528 300 49 62 chr4 67683821 67684344 -134644003 + L2 LINE L2 2510 3158 -155 194 346 60 50 chr4 67684572 67684754 -134643593 - L2 LINE L2 -193 3079 2896 347 275 0 12 chr4 67685020 67685100 -134643247 + Tigger5 DNA MER2_type 1 79 -2244 423 277 8 8 chr4 67685128 67685247 -134643100 + Tigger5 DNA MER2_type 2204 2322 -1 24 32 0 0 chr4 67685290 67685321 -134643026 + AT_rich Low_complexity Low_complexity 1 31 0 228 240 0 0 chr4 67686611 67686661 -134641686 - MSTD-int LTR MaLR -1682 53 4 954 246 127 33 chr4 67686665 67687026 -134641321 - MSTD LTR MaLR 0 396 2 21 71 0 0 chr4 67687841 67687883 -134640464 + AT_rich Low_complexity Low_complexity 1 42 0 2141 125 0 0 chr4 67689163 67689476 -134638871 - AluSq SINE Alu 0 313 1 286 365 8 16 chr4 67689665 67689791 -134638556 + L2 LINE L2 3188 3312 -1 21 0 0 0 chr4 67690725 67690746 -134637601 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 67691745 67691767 -134636580 + AT_rich Low_complexity Low_complexity 1 22 0 867 241 53 5 chr4 67692050 67692257 -134636090 - MER20 DNA MER1_type -1 218 2 1928 124 43 3 chr4 67692258 67692557 -134635790 - AluSq SINE Alu -2 311 1 226 260 91 0 chr4 67694019 67694096 -134634251 - L2 LINE L2 -5 3308 3225 2093 113 7 3 chr4 67694306 67694608 -134633739 + AluSg SINE Alu 1 303 -7 304 22 22 22 chr4 67695796 67695842 -134632505 + (CA)n Simple_repeat Simple_repeat 2 47 0 4544 160 14 12 chr4 67695865 67696692 -134631655 - L1PA15 LINE L1 0 6165 5337 2378 53 0 0 chr4 67696811 67697142 -134631205 + L1PA4 LINE L1 5845 6175 0 311 238 106 35 chr4 67697365 67697592 -134630755 + L1MEd LINE L1 908 1150 -4969 25 0 0 0 chr4 67697813 67697838 -134630509 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr4 67697937 67697963 -134630384 + AT_rich Low_complexity Low_complexity 1 26 0 974 263 12 22 chr4 67698181 67698489 -134629858 + MLT1A1 LTR MaLR 1 365 0 457 323 82 57 chr4 67698691 67698887 -134629460 - LTR16A1 LTR ERVL 0 457 267 1910 135 3 64 chr4 67698887 67699214 -134629133 - AluSq SINE Alu -6 307 1 457 323 82 57 chr4 67699214 67699420 -134628927 - LTR16A1 LTR ERVL -190 267 45 424 360 30 11 chr4 67699965 67700232 -134628115 - ERVL LTR ERVL -1170 4594 4323 36 82 0 0 chr4 67701060 67701145 -134627202 + AT_rich Low_complexity Low_complexity 1 85 0 237 325 18 12 chr4 67701297 67701463 -134626884 - HAL1 LINE L1 -927 1580 1414 812 335 98 46 chr4 67702183 67702860 -134625487 + L2 LINE L2 2196 2907 -407 180 286 54 18 chr4 67703113 67703169 -134625178 + L2 LINE L2 3229 3286 -27 2346 60 0 16 chr4 67703283 67703599 -134624748 - AluY SINE Alu 0 311 1 21 0 0 0 chr4 67703654 67703675 -134624672 + AT_rich Low_complexity Low_complexity 1 21 0 3012 187 75 8 chr4 67703724 67704393 -134623954 - L1MA9 LINE L1 -4 6308 5595 21 0 0 0 chr4 67704484 67704505 -134623842 + AT_rich Low_complexity Low_complexity 1 21 0 188 323 10 94 chr4 67704549 67704645 -134623702 - MIR SINE MIR -174 88 1 29 47 0 0 chr4 67704693 67704736 -134623611 + AT_rich Low_complexity Low_complexity 1 43 0 240 86 0 0 chr4 67705104 67705139 -134623208 + (A)n Simple_repeat Simple_repeat 1 35 0 24 32 0 0 chr4 67705250 67705281 -134623066 + AT_rich Low_complexity Low_complexity 1 31 0 31 58 0 0 chr4 67705475 67705527 -134622820 + AT_rich Low_complexity Low_complexity 1 52 0 261 211 0 0 chr4 67706608 67706660 -134621687 + MIR SINE MIR 211 262 0 25 65 0 0 chr4 67757290 67757336 -134571011 + AT_rich Low_complexity Low_complexity 1 46 0 1376 299 62 26 chr4 67757361 67758104 -134570243 - L1ME2 LINE L1 -84 6080 5311 1100 249 52 20 chr4 67758129 67758567 -134569780 - L1ME2 LINE L1 -890 5256 4805 5972 102 41 8 chr4 67758600 67759592 -134568755 - L1PA13 LINE L1 -3 6160 5151 247 167 30 0 chr4 67759720 67759786 -134568561 + (TA)n Simple_repeat Simple_repeat 2 69 0 262 261 31 8 chr4 67759830 67759960 -134568387 + (TA)n Simple_repeat Simple_repeat 1 133 0 402 327 106 24 chr4 67759992 67760246 -134568101 + L1MC4 LINE L1 6897 7171 -871 1058 268 145 58 chr4 67760775 67761607 -134566740 + L1ME1 LINE L1 5260 6326 -8 26 0 0 0 chr4 67761642 67761668 -134566679 + AT_rich Low_complexity Low_complexity 1 26 0 837 207 11 0 chr4 67761782 67761961 -134566386 - L1MB1 LINE L1 -1 6167 5987 768 302 50 25 chr4 67762025 67762551 -134565796 - L1M1 LINE L1 -4413 1969 1357 1938 183 64 7 chr4 67764943 67765348 -134562999 + MSTA LTR MaLR 1 428 0 701 327 43 50 chr4 67766098 67766752 -134561595 + L2 LINE L2 2665 3312 -1 2085 141 0 0 chr4 67766761 67767060 -134561287 - AluSx SINE Alu -13 299 1 22 0 0 0 chr4 67769047 67769069 -134559278 + AT_rich Low_complexity Low_complexity 1 22 0 221 344 50 44 chr4 67769069 67769229 -134559118 - L2 LINE L2 -592 2722 2562 661 366 34 11 chr4 67769290 67769642 -134558705 - LTR16C LTR ERVL -4 487 128 378 366 27 38 chr4 67769756 67770018 -134558329 - L2 LINE L2 -808 2506 2248 294 327 65 0 chr4 67770262 67770369 -134557978 + LTR16A1 LTR ERVL 24 137 -320 236 295 22 72 chr4 67770457 67770596 -134557751 + LTR16A1 LTR ERVL 294 425 -32 347 226 55 62 chr4 67771230 67771376 -134556971 - LTR16B LTR ERVL -284 180 36 21 0 0 0 chr4 67771686 67771707 -134556640 + AT_rich Low_complexity Low_complexity 1 21 0 283 295 60 18 chr4 67771809 67771975 -134556372 - L1ME3A LINE L1 -8 6162 5990 25 83 0 0 chr4 67772021 67772081 -134556266 + AT_rich Low_complexity Low_complexity 1 60 0 271 207 37 0 chr4 67772258 67772340 -134556007 + (TA)n Simple_repeat Simple_repeat 1 85 0 365 334 52 22 chr4 67772340 67772708 -134555639 - L1M4 LINE L1 -886 5260 4882 3523 99 2 14 chr4 67773239 67773756 -134554591 - MER9 LTR ERVK 0 511 1 254 180 16 0 chr4 67775076 67775137 -134553210 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 279 0 0 0 chr4 67775429 67775460 -134552887 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 11283 207 34 14 chr4 67776801 67780974 -134547373 - L1PA13 LINE L1 -1149 5648 1396 4970 254 83 7 chr4 67780977 67782146 -134546201 - L1PA13 LINE L1 -5529 1258 1 790 267 47 90 chr4 67782386 67783176 -134545171 - L1M4 LINE L1 -1550 4596 3841 258 32 0 0 chr4 67783190 67783221 -134545126 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1483 222 0 7 chr4 67783223 67783507 -134544840 - AluJo SINE Alu -30 282 1 5037 193 37 27 chr4 67783507 67783983 -134544364 - L1MC1 LINE L1 -10 6323 5853 2371 70 0 0 chr4 67783983 67784281 -134544066 - AluY SINE Alu -13 298 1 5037 193 37 27 chr4 67784281 67784963 -134543384 - L1MC1 LINE L1 -480 5853 5152 1955 134 17 0 chr4 67784966 67785091 -134543256 + AluSq SINE Alu 3 124 -189 216 0 0 0 chr4 67785091 67785115 -134543232 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1955 134 17 0 chr4 67785115 67785281 -134543066 + AluSq SINE Alu 124 299 -14 678 228 5 5 chr4 67785384 67785568 -134542779 - L1MC1 LINE L1 -985 5161 4978 695 333 89 31 chr4 67785591 67786195 -134542152 - L1M4 LINE L1 -2287 3859 3221 23 0 0 0 chr4 67786397 67786420 -134541927 + AT_rich Low_complexity Low_complexity 1 23 0 1924 145 0 3 chr4 67786664 67786960 -134541387 - AluSx SINE Alu -17 295 1 1199 276 77 24 chr4 67786996 67787828 -134540519 - L1M4 LINE L1 -2905 3241 2366 295 370 45 91 chr4 67787922 67788827 -134539520 - L2 LINE L2 -2178 1136 273 213 254 0 0 chr4 67789517 67789588 -134538759 + (TATG)n Simple_repeat Simple_repeat 2 72 0 302 260 173 53 chr4 67789874 67790024 -134538323 - L2 LINE L2 -2 3311 3144 243 266 13 13 chr4 67790105 67790184 -134538163 + (TATATG)n Simple_repeat Simple_repeat 6 84 0 186 326 120 18 chr4 67790384 67790660 -134537687 - L2 LINE L2 -1418 1896 1593 2556 133 68 11 chr4 67790679 67791136 -134537211 - L1MA7 LINE L1 -2 6289 5807 407 115 21 21 chr4 67791137 67791233 -134537114 + (TA)n Simple_repeat Simple_repeat 1 96 0 1159 167 36 16 chr4 67791233 67791484 -134536863 - L1MA7 LINE L1 -740 5551 5296 303 175 0 0 chr4 67791498 67791555 -134536792 + (CA)n Simple_repeat Simple_repeat 2 58 0 3494 234 71 41 chr4 67791555 67793395 -134534952 - L1M2 LINE L1 -502 6505 4609 821 318 103 92 chr4 67793465 67794260 -134534087 + L2 LINE L2 1899 2709 -605 1470 148 30 39 chr4 67794260 67794565 -134533782 + L1MA9 LINE L1 6007 6308 -4 821 318 103 92 chr4 67794565 67794812 -134533535 + L2 LINE L2 2709 2952 -362 24 0 0 0 chr4 67795693 67795717 -134532630 + AT_rich Low_complexity Low_complexity 1 24 0 399 349 74 39 chr4 67795741 67796131 -134532216 + MLT1I LTR MaLR 6 409 0 24 0 0 0 chr4 67796824 67796848 -134531499 + AT_rich Low_complexity Low_complexity 1 24 0 211 256 128 13 chr4 67797814 67797892 -134530455 + L2 LINE L2 3210 3296 -17 224 311 113 63 chr4 67798496 67798718 -134529629 + L2 LINE L2 2954 3186 -86 262 310 47 23 chr4 67798835 67798964 -134529383 - MIR SINE MIR -120 142 11 1041 69 0 0 chr4 67799206 67799336 -134529011 - AluY SINE Alu -181 130 1 1944 199 62 18 chr4 67799559 67799995 -134528352 + LOR1b LTR ERV1 1 455 -6 537 146 0 0 chr4 67800801 67800883 -134527464 + L1MC/D LINE L1 5511 5592 -2193 23 33 0 0 chr4 67800883 67800913 -134527434 + AT_rich Low_complexity Low_complexity 1 30 0 2422 120 15 39 chr4 67800917 67801325 -134527022 - L1PB1 LINE L1 -44 6107 5710 424 193 45 0 chr4 67801313 67801401 -134526946 + L1 LINE L1 2501 2592 -3554 * 2612 104 57 0 chr4 67801368 67801792 -134526555 + L1P5 LINE L1 5272 5719 -432 8588 133 119 4 chr4 67801792 67803999 -134524348 - L1M2 LINE L1 -3658 3204 599 1053 182 16 0 chr4 67803976 67804168 -134524179 - L1M2 LINE L1 -6666 197 3 * 301 331 16 8 chr4 67804569 67804693 -134523654 - MLT1L LTR MaLR -2 613 489 2631 219 51 11 chr4 67805871 67805883 -134522464 - L1P5 LINE L1 -547 5609 5599 1988 155 49 8 chr4 67805883 67806250 -134522097 - L1PB4 LINE L1 -2 6154 5773 2631 219 51 11 chr4 67806250 67806514 -134521833 - L1P5 LINE L1 -557 5599 5347 182 37 37 0 chr4 67806514 67806541 -134521806 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2631 219 51 11 chr4 67806541 67807181 -134521166 - L1P5 LINE L1 -809 5347 4652 30 45 0 0 chr4 67808765 67808809 -134519538 + AT_rich Low_complexity Low_complexity 1 44 0 305 307 30 55 chr4 67809516 67809845 -134518502 + L1ME2 LINE L1 4673 4993 -1153 1506 174 0 4 chr4 67809871 67810124 -134518223 + AluSx SINE Alu 1 252 -60 182 188 0 21 chr4 67810347 67810395 -134517952 + (TATG)n Simple_repeat Simple_repeat 4 50 0 893 289 140 31 chr4 67810455 67810522 -134517825 + L1ME2 LINE L1 5270 5328 -836 204 40 0 0 chr4 67810522 67810547 -134517800 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 893 289 140 31 chr4 67810547 67811137 -134517210 + L1ME2 LINE L1 5328 6012 -152 244 146 0 0 chr4 67811155 67811196 -134517151 + L1ME2 LINE L1 6101 6141 -23 848 214 0 0 chr4 67811261 67811420 -134516927 - FRAM SINE Alu -6 160 2 26 0 0 0 chr4 67811477 67811503 -134516844 + AT_rich Low_complexity Low_complexity 1 26 0 12370 45 1 0 chr4 67811503 67813802 -134514545 - L1PA4 LINE L1 -3 6152 3851 3680 54 0 0 chr4 67813802 67814266 -134514081 + L1PA4 LINE L1 3378 3841 -2305 232 300 145 20 chr4 67814261 67814461 -134513886 + L1MC4 LINE L1 6466 6690 -1352 * 390 143 60 12 chr4 67814539 67814707 -134513640 + (TA)n Simple_repeat Simple_repeat 2 177 0 371 88 44 88 chr4 67814702 67814883 -134513464 + (TTATA)n Simple_repeat Simple_repeat 2 174 0 * 784 52 40 58 chr4 67814896 67815070 -134513277 + (TTATA)n Simple_repeat Simple_repeat 4 174 0 292 157 69 10 chr4 67815070 67815172 -134513175 + (TA)n Simple_repeat Simple_repeat 1 108 0 388 71 33 82 chr4 67815175 67815359 -134512988 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 265 117 96 0 chr4 67815359 67815453 -134512894 + (TA)n Simple_repeat Simple_repeat 1 103 0 611 119 40 48 chr4 67815704 67815830 -134512517 - L1M2 LINE L1 -858 5442 5318 5300 81 3 0 chr4 67815831 67816538 -134511809 - L1PA7 LINE L1 -1 6153 5445 8642 97 10 13 chr4 67816538 67817852 -134510495 + L1P LINE L1 2287 3596 -2550 416 330 57 9 chr4 67817967 67818197 -134510150 - L1M4 LINE L1 -768 5378 5138 23 54 0 0 chr4 67818212 67818249 -134510098 + AT_rich Low_complexity Low_complexity 1 37 0 1562 237 28 0 chr4 67818500 67818854 -134509493 - MLT1A1 LTR MaLR 0 365 2 195 222 0 0 chr4 67819151 67819187 -134509160 + L2 LINE L2 3236 3271 -1 23 0 0 0 chr4 67819556 67819579 -134508768 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr4 67819643 67819672 -134508675 + AT_rich Low_complexity Low_complexity 1 29 0 252 246 127 27 chr4 67820109 67820219 -134508128 - L2 LINE L2 -3 3310 3190 506 96 54 24 chr4 67820221 67820387 -134507960 + (TA)n Simple_repeat Simple_repeat 1 171 0 24 32 0 0 chr4 67821746 67821777 -134506570 + AT_rich Low_complexity Low_complexity 1 31 0 2164 197 24 26 chr4 67821985 67822523 -134505824 + L1MA10 LINE L1 5795 6331 -3 201 346 25 12 chr4 67823039 67823120 -134505227 + MIR3 SINE MIR 111 192 -16 1371 233 14 0 chr4 67823700 67824000 -134504347 + AluJo SINE Alu 5 308 0 5191 114 14 4 chr4 67824002 67824772 -134503575 - L1PA12 LINE L1 -1 6167 5390 2559 187 24 13 chr4 67824765 67824812 -134503535 + L1P LINE L1 4854 4899 -1247 * 2339 81 0 26 chr4 67824812 67825120 -134503227 + AluY SINE Alu 1 300 -11 2559 187 24 13 chr4 67825120 67825613 -134502734 + L1P LINE L1 4899 5400 -746 1257 314 18 38 chr4 67825629 67826132 -134502215 + L1M3d LINE L1 1 493 -5398 * 1962 289 71 49 chr4 67826105 67826993 -134501354 + L1M3d LINE L1 240 1156 -4735 2326 74 0 10 chr4 67826993 67827303 -134501044 + AluY SINE Alu 5 311 0 1962 289 71 49 chr4 67827303 67827442 -134500905 + L1M3d LINE L1 1156 1290 -4601 329 288 76 23 chr4 67827655 67827787 -134500560 + L1ME3A LINE L1 6032 6170 0 211 111 0 28 chr4 67829137 67829173 -134499174 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 745 317 167 35 chr4 67829865 67830691 -134497656 + L2 LINE L2 1625 2559 -755 333 0 0 0 chr4 67831192 67831229 -134497118 + (TG)n Simple_repeat Simple_repeat 2 38 0 207 0 0 0 chr4 67831231 67831254 -134497093 + (TA)n Simple_repeat Simple_repeat 2 24 0 1625 240 25 50 chr4 67831941 67832378 -134495969 - MLT1C LTR MaLR -29 438 13 560 215 37 0 chr4 67832378 67832513 -134495834 + MLT2B2 LTR ERVL 1 140 -375 2157 236 26 37 chr4 67834083 67834622 -134493725 - MER74A LTR ERVL 0 558 26 22 35 0 0 chr4 67834705 67834734 -134493613 + AT_rich Low_complexity Low_complexity 1 29 0 1319 207 0 49 chr4 67834844 67835173 -134493174 - AluJb SINE Alu 0 327 13 1189 301 31 23 chr4 67835371 67835856 -134492491 - L1ME1 LINE L1 -18 6148 5660 649 246 87 35 chr4 67835906 67836293 -134492054 - L1ME1 LINE L1 -700 5466 5071 21 0 0 0 chr4 67836367 67836388 -134491959 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr4 67837279 67837308 -134491039 + (TCTA)n Simple_repeat Simple_repeat 1 29 0 3515 133 7 2 chr4 67837778 67838325 -134490022 + MER41A LTR ERV1 5 554 0 348 94 0 0 chr4 67839139 67839192 -134489155 + (CA)n Simple_repeat Simple_repeat 2 54 0 261 0 0 0 chr4 67839602 67839631 -134488716 + (A)n Simple_repeat Simple_repeat 1 29 0 270 331 39 7 chr4 67839882 67840036 -134488311 + HAL1 LINE L1 1616 1774 -733 797 273 5 5 chr4 67840219 67840413 -134487934 - MLT1A2 LTR MaLR 0 374 181 2267 236 29 2 chr4 67840416 67841044 -134487303 + L1 LINE L1 3015 3659 -2487 2037 125 0 28 chr4 67841099 67841418 -134486929 + AluSx SINE Alu 1 310 -2 266 270 14 0 chr4 67841437 67841511 -134486836 + (CA)n Simple_repeat Simple_repeat 2 76 0 1662 194 3 0 chr4 67841592 67841901 -134486446 + AluSx SINE Alu 1 310 -2 204 298 35 0 chr4 67842978 67843035 -134485312 + MIR SINE MIR 196 254 -8 813 307 17 50 chr4 67843948 67844306 -134484041 - MLT1H LTR MaLR -201 348 3 230 260 14 14 chr4 67845026 67845099 -134483248 - HAL1 LINE L1 -360 2147 2075 729 194 103 40 chr4 67845234 67845409 -134482938 + MLT1A2 LTR MaLR 3 188 -186 2644 222 24 13 chr4 67845456 67846220 -134482127 - L1 LINE L1 -3267 4298 3523 * 3708 127 58 5 chr4 67846217 67846885 -134481462 - L1 LINE L1 -4330 3235 2532 7461 261 21 60 chr4 67846902 67849872 -134478475 + L1P LINE L1 1789 4644 -1502 26 50 0 0 chr4 67850485 67850525 -134477822 + AT_rich Low_complexity Low_complexity 1 40 0 2024 125 10 7 chr4 67850885 67851181 -134477166 + AluSq SINE Alu 3 299 -14 305 313 0 0 chr4 67851323 67851403 -134476944 + CT-rich Low_complexity Low_complexity 2 81 0 277 307 59 52 chr4 67851844 67851997 -134476350 - L2 LINE L2 -473 2841 2688 383 172 82 0 chr4 67852026 67852140 -134476207 + L1MC3 LINE L1 7680 7785 0 457 309 35 25 chr4 67852315 67852516 -134475831 - LTR16B LTR ERVL 0 464 262 943 351 56 37 chr4 67853320 67853530 -134474817 - ERVL LTR ERVL -2256 3508 3304 1604 199 0 7 chr4 67853530 67853826 -134474521 - AluJb SINE Alu -18 294 1 943 351 56 37 chr4 67853826 67854241 -134474106 - ERVL LTR ERVL -2460 3304 2871 509 360 66 18 chr4 67854394 67854774 -134473573 - ERVL LTR ERVL -3178 2476 2079 383 301 35 64 chr4 67856644 67856847 -134471500 - LTR16C LTR ERVL -8 483 287 1068 150 44 11 chr4 67857593 67857906 -134470441 - THE1C LTR MaLR 0 375 1 8685 129 40 64 chr4 67857906 67859526 -134468821 - THE1C-int LTR MaLR 0 1580 1 914 165 54 11 chr4 67859526 67859837 -134468510 - THE1C LTR MaLR 0 375 1 277 336 74 27 chr4 67860128 67860277 -134468070 + L2 LINE L2 2703 2858 -456 292 364 166 25 chr4 67860357 67860644 -134467703 + L2 LINE L2 2743 3067 -246 201 259 19 19 chr4 67860802 67860856 -134467491 + L2 LINE L2 3211 3264 -49 1054 286 73 41 chr4 67861659 67862379 -134465968 - L1MC4 LINE L1 -186 7856 6936 1963 151 3 0 chr4 67862379 67862677 -134465670 - AluSx SINE Alu -13 299 1 1054 286 73 41 chr4 67862677 67862950 -134465397 - L1MC4 LINE L1 -1106 6936 6673 30 27 0 0 chr4 67862985 67863022 -134465325 + AT_rich Low_complexity Low_complexity 1 37 0 384 131 0 0 chr4 67863025 67863086 -134465261 - L1MB1 LINE L1 -9 6159 6099 257 217 58 0 chr4 67863266 67863335 -134465012 + LTR50 LTR ERVL 721 793 -2 302 182 33 124 chr4 67863472 67863593 -134464754 + Charlie5 DNA MER1_type 1 110 -2502 226 271 14 0 chr4 67863648 67863718 -134464629 - L1MC4 LINE L1 -1452 6590 6520 2118 203 19 2 chr4 67864397 67864816 -134463531 - MSTB LTR MaLR 0 426 1 291 321 66 9 chr4 67864853 67865065 -134463282 - L1M4 LINE L1 -3608 2538 2315 3689 72 0 2 chr4 67865086 67865569 -134462778 - L1PA6 LINE L1 -5 6149 5668 252 276 65 32 chr4 67865783 67865906 -134462441 + MLT1H LTR MaLR 84 210 -339 22 35 0 0 chr4 67866141 67866170 -134462177 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 67866480 67866511 -134461836 + AT_rich Low_complexity Low_complexity 1 31 0 216 273 0 0 chr4 67866893 67866981 -134461366 + T-rich Low_complexity Low_complexity 1 88 0 1516 202 52 31 chr4 67867338 67867720 -134460627 - MLT1B LTR MaLR 0 390 1 25 51 0 0 chr4 67868024 67868063 -134460284 + AT_rich Low_complexity Low_complexity 1 39 0 367 286 51 51 chr4 67869556 67869734 -134458613 + L2 LINE L2 3134 3311 -2 1133 231 84 19 chr4 67871267 67871588 -134456759 - MLT2C1 LTR ERVL -48 349 8 2909 213 62 9 chr4 67871604 67872298 -134456049 - ERVL-C1 LTR ERVL -17 5747 5017 2644 255 51 23 chr4 67872284 67873034 -134455313 - ERVL LTR ERVL -3576 2188 1418 * 24 53 0 0 chr4 67873162 67873200 -134455147 + AT_rich Low_complexity Low_complexity 1 38 0 189 169 42 30 chr4 67873595 67873761 -134454586 + (TA)n Simple_repeat Simple_repeat 1 168 0 9686 186 40 23 chr4 67874079 67874447 -134453900 - L1MA3 LINE L1 -5 7719 7359 1815 141 58 25 chr4 67874447 67874810 -134453537 + THE1C LTR MaLR 1 375 0 9686 186 40 23 chr4 67874810 67877767 -134450580 - L1MA3 LINE L1 -365 7359 4314 318 232 71 36 chr4 67877783 67877895 -134450452 - L1MA3 LINE L1 -3141 4424 4309 1889 162 39 62 chr4 67877895 67878456 -134449891 + MLT2A2 LTR ERVL 1 554 0 7943 188 68 35 chr4 67878461 67880251 -134448096 - L1MA3 LINE L1 -3257 4308 2578 180 97 0 0 chr4 67880251 67880282 -134448065 + (T)n Simple_repeat Simple_repeat 1 31 0 6097 56 14 46 chr4 67880282 67881177 -134447170 - SVA Other Other 0 1386 520 7943 188 68 35 chr4 67881177 67882643 -134445704 - L1MA3 LINE L1 -4986 2579 521 839 171 26 0 chr4 67882649 67882801 -134445546 - L1MA3 LINE L1 -7395 170 15 741 258 31 91 chr4 67883971 67884858 -134443489 - MER52A LTR ERV1 0 1755 671 23 0 0 0 chr4 67885683 67885706 -134442641 + AT_rich Low_complexity Low_complexity 1 23 0 28 71 0 0 chr4 67885772 67885828 -134442519 + AT_rich Low_complexity Low_complexity 1 56 0 233 150 33 33 chr4 67885966 67886026 -134442321 + (TATATG)n Simple_repeat Simple_repeat 4 63 0 43 71 0 0 chr4 67886127 67886212 -134442135 + AT_rich Low_complexity Low_complexity 1 85 0 241 278 141 61 chr4 67886713 67886911 -134441436 + MIR SINE MIR 49 262 0 1403 215 67 6 chr4 67887658 67888002 -134440345 - MLT1A1 LTR MaLR 0 365 1 408 20 0 0 chr4 67888723 67888772 -134439575 + (TG)n Simple_repeat Simple_repeat 2 50 0 234 174 0 0 chr4 67889761 67889807 -134438540 + (TATG)n Simple_repeat Simple_repeat 2 47 0 748 178 53 150 chr4 67889835 67890194 -134438153 - MLT1B LTR MaLR -52 338 15 23 54 0 0 chr4 67890741 67890778 -134437569 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr4 67891302 67891332 -134437015 + AT_rich Low_complexity Low_complexity 1 30 0 291 28 0 0 chr4 67891680 67891716 -134436631 + (TC)n Simple_repeat Simple_repeat 2 37 0 1154 85 0 12 chr4 67891938 67892102 -134436245 - MLT2A2 LTR ERVL 0 453 292 10216 216 42 42 chr4 67892102 67896671 -134431676 + L1MA5 LINE L1 1387 6079 -769 651 213 24 0 chr4 67896674 67896801 -134431546 + AluJb SINE Alu 1 130 -182 4289 201 27 4 chr4 67896815 67897729 -134430618 + L1MA5 LINE L1 6068 7002 0 697 318 96 13 chr4 67897752 67898202 -134430145 - L1ME3A LINE L1 -329 5841 5355 28 86 0 0 chr4 67899281 67899351 -134428996 + AT_rich Low_complexity Low_complexity 1 70 0 1409 251 42 30 chr4 67901472 67901971 -134426376 - MLT1D LTR MaLR 0 505 1 358 314 112 27 chr4 67902474 67902697 -134425650 + MIR SINE MIR 11 252 -10 1993 204 27 0 chr4 67902905 67903273 -134425074 - ERVL LTR ERVL -973 4791 4414 22 0 0 0 chr4 67903447 67903469 -134424878 + AT_rich Low_complexity Low_complexity 1 22 0 234 255 19 38 chr4 67904172 67904278 -134424069 - L1MC4 LINE L1 -1338 6704 6601 4014 130 84 57 chr4 67904414 67905780 -134422567 - pTR5 LTR ERV1 0 2438 743 9898 217 24 16 chr4 67906881 67910358 -134417989 - L1PA15 LINE L1 0 6165 2668 191 146 24 0 chr4 67910371 67910412 -134417935 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 38330 42 4 2 chr4 67910415 67915979 -134412368 - L1PA4 LINE L1 -3 6467 893 595 63 0 0 chr4 67915946 67916044 -134412303 - L1PA4 LINE L1 -6081 380 10 * 635 267 82 30 chr4 67916049 67916487 -134411860 - L1MDa LINE L1 -3214 3326 2866 1183 265 75 20 chr4 67916505 67916852 -134411495 - MLT1A2 LTR MaLR 0 374 9 407 270 75 106 chr4 67916870 67916948 -134411399 - L1MDa LINE L1 -3701 2839 2760 1432 207 21 10 chr4 67916948 67917238 -134411109 - AluJb SINE Alu -19 293 1 407 270 75 106 chr4 67917238 67917629 -134410718 - L1MDa LINE L1 -3780 2760 2384 401 290 32 54 chr4 67917625 67917846 -134410501 - L1MA10 LINE L1 -1 6332 5948 * 472 348 39 0 chr4 67917881 67918036 -134410311 - MER20 DNA MER1_type -57 162 2 1335 261 102 14 chr4 67918036 67918770 -134409577 - L1ME2 LINE L1 -205 5959 5148 243 79 0 0 chr4 67918876 67918914 -134409433 + (TG)n Simple_repeat Simple_repeat 1 38 0 1821 252 61 65 chr4 67918930 67919594 -134408753 - L1ME2 LINE L1 -1316 4830 4170 198 0 0 0 chr4 67919594 67919616 -134408731 + (TG)n Simple_repeat Simple_repeat 1 22 0 1821 252 61 65 chr4 67919616 67919931 -134408416 - L1ME2 LINE L1 -1976 4170 3855 312 137 0 0 chr4 67919960 67920011 -134408336 + (TA)n Simple_repeat Simple_repeat 2 52 0 905 302 87 11 chr4 67920260 67920618 -134407729 - MLT1G LTR MaLR -195 395 11 38 39 0 0 chr4 67920644 67920696 -134407651 + AT_rich Low_complexity Low_complexity 1 52 0 200 317 0 0 chr4 67921493 67921553 -134406794 + (TAGG)n Simple_repeat Simple_repeat 3 62 0 322 238 116 68 chr4 67922018 67922165 -134406182 + L2 LINE L2 3159 3312 -1 25 75 0 0 chr4 67923334 67923387 -134404960 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr4 67923519 67923541 -134404806 + AT_rich Low_complexity Low_complexity 1 22 0 34 55 0 0 chr4 67923608 67923663 -134404684 + AT_rich Low_complexity Low_complexity 1 55 0 22 0 0 0 chr4 67923983 67924005 -134404342 + AT_rich Low_complexity Low_complexity 1 22 0 27 103 0 0 chr4 67924229 67924326 -134404021 + AT_rich Low_complexity Low_complexity 1 97 0 629 207 53 7 chr4 67924468 67924618 -134403729 + AluJb SINE Alu 1 157 -155 23 68 0 0 chr4 67924867 67924911 -134403436 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr4 67925232 67925253 -134403094 + AT_rich Low_complexity Low_complexity 1 21 0 2020 117 3 7 chr4 67925515 67925806 -134402541 - AluSc SINE Alu -16 293 4 26 50 0 0 chr4 67925980 67926020 -134402327 + AT_rich Low_complexity Low_complexity 1 40 0 2607 84 3 8 chr4 67926394 67926751 -134401596 + THE1A LTR MaLR 1 355 0 24 32 0 0 chr4 67927387 67927418 -134400929 + AT_rich Low_complexity Low_complexity 1 31 0 496 325 53 46 chr4 67929186 67929623 -134398724 + L1MDa LINE L1 1290 1729 -4811 22 0 0 0 chr4 67929946 67929968 -134398379 + AT_rich Low_complexity Low_complexity 1 22 0 333 320 91 41 chr4 67930559 67930756 -134397591 - L1MEc LINE L1 -4642 1754 1548 407 302 54 49 chr4 67931362 67932239 -134396108 - L1M4 LINE L1 -4641 2184 1146 405 343 30 0 chr4 67932851 67933020 -134395327 - HERV16 LTR ERVL -3216 1780 1607 405 226 0 0 chr4 67933158 67933273 -134395074 + (TA)n Simple_repeat Simple_repeat 1 115 0 364 362 60 0 chr4 67933277 67933426 -134394921 - HERV16 LTR ERVL -3618 1378 1221 784 247 106 30 chr4 67933433 67933668 -134394679 - MER76 LTR ERV -7 681 429 1477 170 16 4 chr4 67933737 67933984 -134394363 - MER76 LTR ERV -438 250 1 1170 316 29 26 chr4 67935166 67935619 -134392728 - LTR16B LTR ERVL -8 456 3 2345 78 0 28 chr4 67936061 67936381 -134391966 + AluY SINE Alu 1 311 0 784 239 52 105 chr4 67936893 67937274 -134391073 + MLT1A1 LTR MaLR 1 361 -4 22 0 0 0 chr4 67938069 67938091 -134390256 + AT_rich Low_complexity Low_complexity 1 22 0 240 214 0 0 chr4 67938452 67938494 -134389853 + LTR16C LTR ERVL 431 472 -19 2129 108 26 7 chr4 67939533 67939838 -134388509 - AluSx SINE Alu 0 312 2 297 0 0 0 chr4 67940005 67940038 -134388309 + (TG)n Simple_repeat Simple_repeat 2 34 0 576 239 144 27 chr4 67940038 67940409 -134387938 - L1ME LINE L1 -728 5507 5099 21 0 0 0 chr4 67941203 67941224 -134387123 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr4 67941377 67941405 -134386942 + (TG)n Simple_repeat Simple_repeat 2 29 0 273 255 99 28 chr4 67941781 67941922 -134386425 + L1MC4a LINE L1 7564 7714 -94 30 59 0 0 chr4 67942051 67942102 -134386245 + AT_rich Low_complexity Low_complexity 1 51 0 15759 196 26 11 chr4 67943700 67943959 -134384388 - L1M1 LINE L1 -4444 3121 2867 180 0 0 0 chr4 67943959 67943979 -134384368 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 15759 196 26 11 chr4 67943979 67946779 -134381568 - L1M1 LINE L1 -4698 2867 17 2886 73 93 0 chr4 67947276 67947686 -134380661 - LTR7 LTR ERV1 -2 448 1 22 0 0 0 chr4 67948476 67948498 -134379849 + AT_rich Low_complexity Low_complexity 1 22 0 8542 207 29 107 chr4 67948650 67949902 -134378445 + L1PB3 LINE L1 1811 3159 -2995 2139 128 45 28 chr4 67949902 67950260 -134378087 + THE1B LTR MaLR 1 364 0 8542 207 29 107 chr4 67950260 67950930 -134377417 + L1PB3 LINE L1 3159 3880 -2274 1561 165 34 52 chr4 67950930 67951258 -134377089 + THE1C LTR MaLR 54 375 0 8542 207 29 107 chr4 67951258 67953276 -134375071 + L1PB3 LINE L1 3880 5724 -430 2153 139 22 8 chr4 67953278 67953645 -134374702 + L1PB3 LINE L1 5781 6152 -2 399 267 166 28 chr4 67953715 67954280 -134374067 - L1ME LINE L1 -1617 4598 3956 233 177 32 16 chr4 67954338 67954400 -134373947 - L1ME LINE L1 -3865 2350 2288 396 331 173 40 chr4 67954401 67955084 -134373263 - L1ME LINE L1 -4080 2316 1543 268 206 52 21 chr4 67955270 67955367 -134372980 - L1ME LINE L1 -5058 1338 1239 1421 219 53 20 chr4 67955409 67955765 -134372582 + MLT1A2 LTR MaLR 3 370 -4 1142 197 28 5 chr4 67955886 67956175 -134372172 + MER2 DNA MER2_type 1 344 -1 27 29 0 0 chr4 67956250 67956284 -134372063 + AT_rich Low_complexity Low_complexity 1 34 0 849 324 26 21 chr4 67959060 67959480 -134368867 - HERV3 LTR ERV1 -2088 2559 2138 405 299 120 74 chr4 67960057 67960843 -134367504 - HERV3 LTR ERV1 -2917 3884 3063 252 321 0 0 chr4 67960906 67960990 -134367357 - HERV3 LTR ERV1 -4657 3769 3686 1947 199 53 23 chr4 67961199 67961694 -134366653 - HERV3 LTR ERV1 -4064 4109 129 4614 144 28 44 chr4 67963538 67964400 -134363947 - HERV3 LTR ERV1 -5910 848 1 4860 110 18 16 chr4 67964400 67965164 -134363183 - MER4E LTR ERV1 0 766 1 1192 104 5 16 chr4 67965164 67965356 -134362991 + THE1C-int LTR MaLR 1391 1580 0 2096 158 5 31 chr4 67965356 67965741 -134362606 + THE1C LTR MaLR 1 375 0 379 279 29 52 chr4 67966198 67966370 -134361977 + Charlie4 DNA MER1_type 20 187 -1774 2529 162 12 28 chr4 67966468 67966572 -134361775 + MSTA LTR MaLR 1 105 -323 2216 92 3 3 chr4 67966572 67966864 -134361483 - AluSc SINE Alu -16 293 2 2529 162 12 28 chr4 67966864 67967184 -134361163 + MSTA LTR MaLR 105 418 -10 275 250 121 8 chr4 67967232 67967364 -134360983 + Charlie4 DNA MER1_type 1815 1961 0 23 0 0 0 chr4 67967432 67967455 -134360892 + AT_rich Low_complexity Low_complexity 1 23 0 2162 102 0 3 chr4 67967464 67967773 -134360574 - AluY SINE Alu 0 308 1 191 222 12 0 chr4 67968077 67968158 -134360189 + CT-rich Low_complexity Low_complexity 1 82 0 278 179 0 15 chr4 67968623 67968690 -134359657 + GA-rich Low_complexity Low_complexity 3 68 0 26 0 0 0 chr4 67969493 67969519 -134358828 + AT_rich Low_complexity Low_complexity 1 26 0 214 383 0 0 chr4 67969615 67969709 -134358638 + MIR SINE MIR 49 142 -120 371 233 174 0 chr4 67969909 67969995 -134358352 + MER82 DNA MER2_type 38 138 -515 2654 148 30 86 chr4 67969998 67970565 -134357782 + LTR26 LTR ERV1 1 535 -68 367 96 0 41 chr4 67971278 67971351 -134356996 - L1MA7 LINE L1 -3 6288 6219 35 41 0 0 chr4 67971584 67971633 -134356714 + AT_rich Low_complexity Low_complexity 1 49 0 1906 260 13 8 chr4 67973376 67973845 -134354502 - MER70A LTR ERVL 0 472 2 17830 209 9 14 chr4 67973852 67975809 -134352538 - MER70A-int LTR ERVL 0 5023 3090 1884 182 63 29 chr4 67975809 67976221 -134352126 - MSTB LTR MaLR 0 426 1 17830 209 9 14 chr4 67976221 67977684 -134350663 - MER70A-int LTR ERVL -1933 3090 1621 5868 195 44 19 chr4 67977684 67978846 -134349501 - MER70A-int LTR ERVL -3832 1191 1 1609 246 18 34 chr4 67978848 67979234 -134349113 - MER70A LTR ERVL -2 470 91 460 174 0 12 chr4 67979228 67979314 -134349033 - MER70B LTR ERVL -414 164 80 * 3256 176 65 36 chr4 67979329 67980079 -134348268 - LTR1 LTR ERV1 -13 772 1 443 254 48 32 chr4 67980079 67980163 -134348184 - MER70A LTR ERVL -382 90 5 24 53 0 0 chr4 67980867 67980905 -134347442 + AT_rich Low_complexity Low_complexity 1 38 0 7393 41 0 0 chr4 67980905 67982105 -134346242 - L1PA4 LINE L1 -3 6152 4953 2321 166 24 7 chr4 67982282 67982703 -134345644 - MSTA LTR MaLR 0 428 1 34 24 0 0 chr4 67983620 67983661 -134344686 + AT_rich Low_complexity Low_complexity 1 41 0 225 0 0 0 chr4 67983806 67983831 -134344516 + (GA)n Simple_repeat Simple_repeat 2 26 0 1635 211 51 14 chr4 67983832 67984183 -134344164 - MLT2D LTR ERVL -48 366 3 1620 282 30 22 chr4 67984305 67985060 -134343287 + L1M4 LINE L1 2264 3024 -3122 4664 227 119 7 chr4 67985141 67986370 -134341977 + L1P4 LINE L1 466 1925 -4278 2203 283 45 15 chr4 67986367 67986421 -134341926 + L1MC2 LINE L1 2352 2403 -3743 * 3954 117 94 62 chr4 67986421 67987176 -134341171 - LTR19C LTR ERV1 0 779 1 2203 283 45 15 chr4 67987176 67988100 -134340247 + L1MC2 LINE L1 2403 3359 -2787 2913 205 29 13 chr4 67988106 67989254 -134339093 + L1P4 LINE L1 4672 5834 -389 1633 173 38 11 chr4 67989319 67989666 -134338681 - L1MA2 LINE L1 0 6304 5949 16774 202 50 13 chr4 67989676 67993488 -134334859 - L1 LINE L1 -3602 3963 10 3337 243 48 21 chr4 67993789 67995694 -134332653 + L1MC2 LINE L1 4276 6276 -68 2108 125 3 0 chr4 67995714 67996017 -134332330 - AluSq SINE Alu -9 304 1 54 56 0 0 chr4 67996017 67996106 -134332241 + AT_rich Low_complexity Low_complexity 1 89 0 645 195 24 16 chr4 67996221 67996344 -134332003 - FLAM_A SINE Alu -9 124 1 489 169 12 0 chr4 67998041 67998124 -134330223 + L1PA11 LINE L1 3525 3608 -2538 * 4363 168 6 5 chr4 67998122 67998931 -134329416 + L1PA11 LINE L1 4492 5301 -845 606 63 0 0 chr4 67998934 67999013 -134329334 + (CCCCCT)n Simple_repeat Simple_repeat 2 80 0 8831 73 14 102 chr4 67999014 68000475 -134327872 + SVA Other Other 52 1383 -3 5750 135 1 1 chr4 68000595 68001476 -134326871 + L1PA11 LINE L1 5293 6173 -1 234 0 0 0 chr4 68001482 68001508 -134326839 + (A)n Simple_repeat Simple_repeat 1 26 0 2130 106 3 0 chr4 68001514 68001807 -134326540 + AluSc SINE Alu 3 296 -13 1488 161 54 7 chr4 68001961 68002313 -134326034 + LTR62 LTR ERVK 261 675 -44 1744 161 14 0 chr4 68003062 68003353 -134324994 - L1P LINE L1 -1814 4332 4038 4871 141 21 34 chr4 68003354 68004332 -134324015 + L1PA14 LINE L1 5183 6148 -13 8409 110 11 14 chr4 68004752 68006810 -134321537 - L1PA7 LINE L1 -3 6151 4080 22 0 0 0 chr4 68007192 68007214 -134321133 + AT_rich Low_complexity Low_complexity 1 22 0 315 0 0 0 chr4 68007632 68007667 -134320680 + (CA)n Simple_repeat Simple_repeat 2 36 0 1581 177 0 25 chr4 68008166 68008482 -134319865 + L1PA13 LINE L1 5845 6152 -11 664 256 119 80 chr4 68008571 68008957 -134319390 + MLT1C LTR MaLR 6 406 -61 3789 226 39 19 chr4 68008985 68009581 -134318766 + L1M3 LINE L1 4061 4689 -1457 2922 127 25 0 chr4 68009581 68010023 -134318324 + MLT2A2 LTR ERVL 1 453 0 3789 226 39 19 chr4 68010023 68010505 -134317842 + L1M3 LINE L1 4689 5160 -986 1502 246 0 9 chr4 68010505 68010842 -134317505 + MLT1A1 LTR MaLR 1 334 -31 247 269 0 32 chr4 68010851 68010944 -134317403 - L1MC4 LINE L1 -1339 6703 6614 * 263 225 88 0 chr4 68010867 68010947 -134317400 + L1MC4 LINE L1 6614 6700 -1342 1578 187 17 37 chr4 68010995 68011449 -134316898 + L1M3 LINE L1 5153 5609 -559 28 29 0 0 chr4 68011457 68011492 -134316855 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr4 68012050 68012086 -134316261 + AT_rich Low_complexity Low_complexity 1 36 0 191 241 0 13 chr4 68012166 68012245 -134316102 + (CATATA)n Simple_repeat Simple_repeat 5 82 0 580 191 8 53 chr4 68012247 68012378 -134315969 + MER2 DNA MER2_type 1 125 -220 1445 190 93 4 chr4 68012381 68012660 -134315687 - MER65C LTR ERV1 -157 304 1 235 200 0 50 chr4 68013476 68013536 -134314811 + L1MC4 LINE L1 6655 6711 -1331 236 319 65 57 chr4 68013992 68014221 -134314126 + MLT1H LTR MaLR 97 327 -222 21 0 0 0 chr4 68014310 68014331 -134314016 + AT_rich Low_complexity Low_complexity 1 21 0 2282 95 0 0 chr4 68015060 68015356 -134312991 - AluSg1 SINE Alu -13 296 1 819 31 0 0 chr4 68015356 68015454 -134312893 + (CATATA)n Simple_repeat Simple_repeat 5 102 0 2195 95 0 3 chr4 68015460 68015754 -134312593 - AluY SINE Alu -18 293 1 2158 84 7 24 chr4 68016153 68016449 -134311898 - AluSg SINE Alu -19 291 1 30 45 0 0 chr4 68016725 68016769 -134311578 + AT_rich Low_complexity Low_complexity 1 44 0 10474 231 56 49 chr4 68016776 68020011 -134308336 - L1PA16 LINE L1 -6 7598 4384 693 108 0 0 chr4 68020011 68020113 -134308234 + AluY SINE Alu 188 289 -22 10474 231 56 49 chr4 68020113 68020763 -134307584 - L1PA16 LINE L1 -3220 4384 3739 1875 139 10 7 chr4 68020763 68021051 -134307296 - AluSc SINE Alu -1 308 20 10474 231 56 49 chr4 68021051 68022353 -134305994 - L1PA16 LINE L1 -3865 3739 2293 35 24 0 0 chr4 68022353 68022395 -134305952 + AT_rich Low_complexity Low_complexity 1 42 0 304 333 23 38 chr4 68022909 68023041 -134305306 + L2 LINE L2 3184 3313 0 296 244 37 24 chr4 68023200 68023282 -134305065 + L1MC4 LINE L1 6807 6889 -1153 451 299 11 16 chr4 68023359 68023543 -134304804 + L1MC5 LINE L1 7718 7900 -61 22 56 0 0 chr4 68023688 68023724 -134304623 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr4 68024089 68024113 -134304234 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 68024522 68024543 -134303804 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr4 68024628 68024670 -134303677 + AT_rich Low_complexity Low_complexity 1 42 0 939 271 47 82 chr4 68025394 68025907 -134302440 + MER34 LTR ERV1 1 495 -47 207 420 10 10 chr4 68026301 68026401 -134301946 - L2 LINE L2 -5 3267 3168 209 270 32 0 chr4 68026889 68026952 -134301395 - L2 LINE L2 -589 2725 2661 1192 217 12 65 chr4 68027010 68027333 -134301014 + AluJo SINE Alu 6 311 -1 417 169 156 0 chr4 68027520 68027597 -134300750 + FRAM SINE Alu 62 150 -26 291 238 71 0 chr4 68027744 68027828 -134300519 + MER20 DNA MER1_type 130 219 0 401 313 72 84 chr4 68028183 68028681 -134299666 - L2 LINE L2 -1381 1933 1442 26 30 0 0 chr4 68029232 68029265 -134299082 + AT_rich Low_complexity Low_complexity 1 33 0 259 59 0 73 chr4 68029450 68029518 -134298829 + (TA)n Simple_repeat Simple_repeat 2 64 0 446 279 10 0 chr4 68029576 68029680 -134298667 + MER5A DNA MER1_type 1 105 -84 213 39 0 0 chr4 68029680 68029706 -134298641 + (TA)n Simple_repeat Simple_repeat 2 27 0 315 0 0 0 chr4 68030116 68030151 -134298196 + (TG)n Simple_repeat Simple_repeat 2 36 0 447 268 209 0 chr4 68030587 68030740 -134297607 - MER63A DNA MER1_type 0 210 26 710 290 27 0 chr4 68030793 68030976 -134297371 + MER5A DNA MER1_type 1 188 -1 228 149 0 0 chr4 68030992 68031039 -134297308 + (TG)n Simple_repeat Simple_repeat 1 47 0 373 316 211 6 chr4 68032128 68032299 -134296048 + MIR SINE MIR 54 259 -3 860 267 32 14 chr4 68032332 68032677 -134295670 + L1M4 LINE L1 3849 4199 -1947 537 216 194 0 chr4 68032845 68032984 -134295363 + MSTA LTR MaLR 1 166 -262 3073 151 12 48 chr4 68032984 68033564 -134294783 + THE1-int LTR MaLR 32 591 -989 1725 142 134 28 chr4 68033586 68033973 -134294374 + MSTA LTR MaLR 1 428 0 2800 324 61 37 chr4 68033973 68035577 -134292770 + ERVL LTR ERVL 1789 3430 -2334 1605 44 26 0 chr4 68035650 68035876 -134292471 - L1PA5 LINE L1 -2747 3399 3168 15739 47 8 1 chr4 68035876 68036979 -134291368 + L1PA5 LINE L1 3395 4489 -1665 2367 100 0 0 chr4 68036979 68037288 -134291059 + AluY SINE Alu 1 309 -2 15739 47 8 1 chr4 68037288 68038948 -134289399 + L1PA5 LINE L1 4489 6149 -5 447 35 0 0 chr4 68038949 68039006 -134289341 + (TA)n Simple_repeat Simple_repeat 2 58 0 648 345 64 61 chr4 68039347 68040236 -134288111 + ERVL LTR ERVL 4176 5067 -697 405 348 123 28 chr4 68040749 68041140 -134287207 + LTR16A LTR ERVL 9 436 -14 1147 220 155 110 chr4 68041280 68041906 -134286441 - MLT1E1 LTR MaLR 0 654 1 228 303 22 0 chr4 68042068 68042157 -134286190 + GA-rich Low_complexity Low_complexity 4 94 0 23 0 0 0 chr4 68042900 68042923 -134285424 + AT_rich Low_complexity Low_complexity 1 23 0 2160 99 0 0 chr4 68043959 68044284 -134284063 + AluSp SINE Alu 1 325 0 251 357 61 0 chr4 68044444 68044542 -134283805 - L2 LINE L2 -4 3309 3206 21 0 0 0 chr4 68045153 68045174 -134283173 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr4 68045217 68045260 -134283087 + AT_rich Low_complexity Low_complexity 1 43 0 1355 214 57 7 chr4 68046763 68047043 -134281304 + MLT1A1 LTR MaLR 1 294 -71 2099 131 0 28 chr4 68047584 68047905 -134280442 + AluSx SINE Alu 1 312 0 23 33 0 0 chr4 68048638 68048668 -134279679 + AT_rich Low_complexity Low_complexity 1 30 0 903 168 52 0 chr4 68049263 68049436 -134278911 + L1MA9 LINE L1 6100 6281 -31 2479 214 92 62 chr4 68049704 68050936 -134277411 - L1MB7 LINE L1 -2 6418 5155 912 288 37 29 chr4 68050947 68051325 -134277022 + L1M4 LINE L1 4439 4819 -1327 1906 257 132 41 chr4 68051325 68052040 -134276307 - L1MB7 LINE L1 -2696 3686 3037 2282 168 26 12 chr4 68052040 68052464 -134275883 - MSTB1 LTR MaLR 0 432 3 1906 257 132 41 chr4 68052464 68052539 -134275808 - L1MB7 LINE L1 -3345 3037 2970 2259 128 11 3 chr4 68052539 68052891 -134275456 + THE1A LTR MaLR 1 355 0 1906 257 132 41 chr4 68052891 68053607 -134274740 - L1MB7 LINE L1 -3412 2970 2032 580 282 105 5 chr4 68053875 68054084 -134274263 - L1PA13 LINE L1 -6557 230 1 203 292 7 49 chr4 68054301 68054445 -134273902 + (TATATG)n Simple_repeat Simple_repeat 6 143 0 25 51 0 0 chr4 68054511 68054550 -134273797 + AT_rich Low_complexity Low_complexity 1 39 0 189 121 0 0 chr4 68054577 68054610 -134273737 + (TTTTTA)n Simple_repeat Simple_repeat 4 36 0 42 86 0 0 chr4 68054683 68054788 -134273559 + AT_rich Low_complexity Low_complexity 1 105 0 21 36 0 0 chr4 68055415 68055443 -134272904 + AT_rich Low_complexity Low_complexity 1 28 0 434 354 0 0 chr4 68056190 68056317 -134272030 - MER5B DNA MER1_type -50 128 2 23 0 0 0 chr4 68056524 68056547 -134271800 + AT_rich Low_complexity Low_complexity 1 23 0 246 246 60 30 chr4 68056547 68056681 -134271666 - Charlie2 DNA MER1_type -137 2725 2588 1674 203 5 46 chr4 68056803 68057173 -134271174 + MLT1A1 LTR MaLR 3 357 -8 716 279 53 45 chr4 68057185 68057439 -134270908 - Charlie2 DNA MER1_type -473 2389 2138 2012 145 0 19 chr4 68057439 68057756 -134270591 - AluSx SINE Alu -1 311 1 716 279 53 45 chr4 68057756 68058032 -134270315 - Charlie2 DNA MER1_type -724 2138 1855 523 269 59 51 chr4 68058058 68058314 -134270033 - Charlie2 DNA MER1_type -2495 287 30 892 236 49 21 chr4 68058681 68059051 -134269296 + L1MEc LINE L1 2125 2459 -3756 259 77 19 19 chr4 68059051 68059103 -134269244 + (TTTTA)n Simple_repeat Simple_repeat 1 52 0 442 102 0 0 chr4 68059105 68059164 -134269183 - L1PA10 LINE L1 -23 6145 6087 22 35 0 0 chr4 68059284 68059313 -134269034 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr4 68059434 68059459 -134268888 + AT_rich Low_complexity Low_complexity 1 25 0 22 106 0 0 chr4 68060336 68060421 -134267926 + AT_rich Low_complexity Low_complexity 1 85 0 1247 288 126 22 chr4 68060950 68061409 -134266938 - MLT1G LTR MaLR -76 514 8 3406 168 8 22 chr4 68061563 68062184 -134266163 - LTR9 LTR ERV1 0 612 1 21 36 0 0 chr4 68063231 68063259 -134265088 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr4 68063320 68063347 -134265000 + AT_rich Low_complexity Low_complexity 1 27 0 1743 136 0 80 chr4 68063819 68064143 -134264204 + AluSx SINE Alu 1 298 -14 261 198 12 37 chr4 68064599 68064680 -134263667 + (TA)n Simple_repeat Simple_repeat 2 80 0 24 0 0 0 chr4 68064744 68064768 -134263579 + AT_rich Low_complexity Low_complexity 1 24 0 2284 90 0 3 chr4 68065086 68065386 -134262961 - AluSq SINE Alu -10 303 5 1449 139 25 11 chr4 68065717 68065991 -134262356 + L1MA2 LINE L1 6017 6294 -10 2072 73 0 11 chr4 68066839 68067113 -134261234 + AluSc SINE Alu 1 271 -38 234 150 0 0 chr4 68067344 68067384 -134260963 + (TG)n Simple_repeat Simple_repeat 1 40 0 203 212 0 15 chr4 68067567 68067633 -134260714 + GA-rich Low_complexity Low_complexity 1 65 0 1882 122 57 4 chr4 68067662 68067941 -134260406 + AluSx SINE Alu 1 294 -18 1928 280 55 38 chr4 68068290 68068490 -134259857 - L1M4c LINE L1 -4536 2110 1915 279 0 0 0 chr4 68068490 68068521 -134259826 + (TG)n Simple_repeat Simple_repeat 2 32 0 1928 280 55 38 chr4 68068521 68069419 -134258928 - L1M4c LINE L1 -4731 1915 994 238 276 0 0 chr4 68069435 68069493 -134258854 - L1M4c LINE L1 -5704 838 781 354 61 0 0 chr4 68069511 68069560 -134258787 + (TG)n Simple_repeat Simple_repeat 2 50 0 2528 186 39 2 chr4 68069601 68070064 -134258283 + MER31A LTR ERV1 1 480 -5 1966 112 14 3 chr4 68070181 68070475 -134257872 + AluY SINE Alu 1 297 -14 24 0 0 0 chr4 68070759 68070783 -134257564 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr4 68071829 68071858 -134256489 + AT_rich Low_complexity Low_complexity 1 29 0 433 258 30 23 chr4 68071883 68072015 -134256332 - MLT1E LTR MaLR -2 652 520 1067 282 86 25 chr4 68072050 68072483 -134255864 + MER74B LTR ERVL 89 547 -75 261 286 157 27 chr4 68072353 68072500 -134255847 - MER88 LTR ERVL -220 244 79 * 721 252 175 110 chr4 68072560 68073052 -134255295 - MLT1E LTR MaLR -130 524 1 342 36 54 0 chr4 68073082 68073138 -134255209 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 608 322 101 35 chr4 68073990 68074416 -134253931 + LTR16A LTR ERVL 4 457 0 261 282 47 0 chr4 68074585 68074670 -134253677 + MIR SINE MIR 3 91 -171 23 0 0 0 chr4 68074738 68074761 -134253586 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 68074780 68074801 -134253546 + AT_rich Low_complexity Low_complexity 1 21 0 2126 106 6 13 chr4 68075920 68076232 -134252115 + AluSq SINE Alu 1 310 -3 24 77 0 0 chr4 68077011 68077063 -134251284 + AT_rich Low_complexity Low_complexity 1 52 0 23 33 0 0 chr4 68077654 68077684 -134250663 + AT_rich Low_complexity Low_complexity 1 30 0 34 24 0 0 chr4 68078013 68078054 -134250293 + AT_rich Low_complexity Low_complexity 1 41 0 1180 142 0 0 chr4 68078089 68078258 -134250089 - AluSp SINE Alu -15 298 130 1528 182 55 39 chr4 68080724 68081108 -134247239 - MLT1B LTR MaLR 0 390 1 1972 97 75 0 chr4 68082218 68082497 -134245850 + AluSg SINE Alu 1 300 -10 23 0 0 0 chr4 68087007 68087030 -134241317 + AT_rich Low_complexity Low_complexity 1 23 0 407 189 11 0 chr4 68088528 68088618 -134239729 - L1 LINE L1 -1809 4337 4247 1162 212 31 14 chr4 68089214 68089619 -134238728 + LTR54 LTR ERV1 8 506 -4 22 0 0 0 chr4 68090477 68090499 -134237848 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr4 68091316 68091355 -134236992 + AT_rich Low_complexity Low_complexity 1 39 0 240 351 106 34 chr4 68092516 68092724 -134235623 + MIR SINE MIR 23 245 -17 23 33 0 0 chr4 68093586 68093616 -134234731 + AT_rich Low_complexity Low_complexity 1 30 0 223 171 0 0 chr4 68093666 68093707 -134234640 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 9883 188 19 21 chr4 68094614 68095314 -134233033 - L1PA13 LINE L1 -8 6806 6106 1949 102 6 81 chr4 68095314 68095647 -134232700 - AluSx SINE Alu -4 308 1 9883 188 19 21 chr4 68095647 68097835 -134230512 - L1PA13 LINE L1 -708 6106 3895 9530 213 46 16 chr4 68097839 68100119 -134228228 - L1PA13 LINE L1 -4179 2618 258 2703 172 52 35 chr4 68100300 68100835 -134227512 + MER7C DNA MER2_type 59 602 0 35 54 0 0 chr4 68100986 68101042 -134227305 + AT_rich Low_complexity Low_complexity 1 56 0 1269 204 118 34 chr4 68101121 68101538 -134226809 - Cheshire DNA MER1_type -18 2402 1951 3689 231 32 12 chr4 68101608 68102576 -134225771 - Cheshire DNA MER1_type -793 1627 641 11338 115 26 5 chr4 68102580 68105140 -134223207 - L1PA8 LINE L1 0 6172 3554 1278 60 6 16 chr4 68105146 68105377 -134222970 - MER11A LTR ERVK -940 326 1 31732 77 5 2 chr4 68105377 68109469 -134218878 - HERVK11 LTR ERVK 0 7953 3850 4665 122 18 4 chr4 68109473 68110152 -134218195 - HERVK11 LTR ERVK -7265 688 1 4622 68 2 24 chr4 68110152 68111212 -134217135 - MER11A LTR ERVK 0 1266 1 291 28 0 0 chr4 68111540 68111576 -134216771 + (TTA)n Simple_repeat Simple_repeat 1 36 0 2015 124 4 0 chr4 68111576 68111850 -134216497 - AluSx SINE Alu -32 280 6 196 326 12 23 chr4 68112329 68112415 -134215932 - MIR3 SINE MIR -115 93 9 656 350 40 29 chr4 68112990 68113410 -134214937 + L2 LINE L2 2874 3298 -15 23 0 0 0 chr4 68114065 68114088 -134214259 + AT_rich Low_complexity Low_complexity 1 23 0 354 313 0 36 chr4 68114763 68114875 -134213472 - MIR SINE MIR -152 110 3 283 293 128 16 chr4 68115384 68115572 -134212775 - L1MC/D LINE L1 -2246 5562 5354 334 143 0 18 chr4 68115880 68115936 -134212411 + MER5B DNA MER1_type 123 177 -1 26 64 0 0 chr4 68116722 68116769 -134211578 + AT_rich Low_complexity Low_complexity 1 47 0 226 169 31 0 chr4 68117579 68117644 -134210703 + (TA)n Simple_repeat Simple_repeat 1 67 0 22 35 0 0 chr4 68117913 68117942 -134210405 + AT_rich Low_complexity Low_complexity 1 29 0 264 316 71 24 chr4 68117988 68118156 -134210191 - Charlie7 DNA MER1_type -2168 444 269 349 115 0 0 chr4 68118307 68118359 -134209988 - MSTA LTR MaLR 0 428 377 286 196 0 82 chr4 68118375 68118472 -134209875 - L1MC4 LINE L1 -1339 6703 6615 236 228 35 0 chr4 68118456 68118513 -134209834 + L1MCa LINE L1 2006 2064 -4362 * 302 167 14 0 chr4 68118517 68118576 -134209771 + (TA)n Simple_repeat Simple_repeat 1 63 -10 189 0 0 0 chr4 68118576 68118597 -134209750 + (CA)n Simple_repeat Simple_repeat 2 22 0 302 167 14 0 chr4 68118597 68118609 -134209738 + (TA)n Simple_repeat Simple_repeat 63 73 0 1416 170 110 36 chr4 68118609 68118945 -134209402 - MSTA LTR MaLR -67 361 1 8293 154 30 48 chr4 68118950 68120545 -134207802 - MSTA-int LTR MaLR -5 1575 6 1993 129 102 20 chr4 68120553 68120947 -134207400 - MSTA LTR MaLR -2 426 1 237 196 0 0 chr4 68122445 68122501 -134205846 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 1770 118 80 0 chr4 68122619 68122910 -134205437 + AluSg SINE Alu 1 312 0 1751 159 143 11 chr4 68122914 68123292 -134205055 + MSTA LTR MaLR 1 428 0 2131 180 41 17 chr4 68123432 68123848 -134204499 + MSTB LTR MaLR 1 426 0 186 150 0 0 chr4 68124095 68124135 -134204212 + (TATG)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr4 68124656 68124676 -134203671 + (TTA)n Simple_repeat Simple_repeat 2 21 0 27 0 0 0 chr4 68124961 68124988 -134203359 + AT_rich Low_complexity Low_complexity 1 27 0 246 160 0 0 chr4 68125514 68125564 -134202783 + (CA)n Simple_repeat Simple_repeat 2 51 0 1575 115 0 13 chr4 68127306 68127541 -134200806 + AluSc SINE Alu 68 299 -10 189 0 0 0 chr4 68128476 68128497 -134199850 + (TTTCC)n Simple_repeat Simple_repeat 5 25 0 238 171 0 0 chr4 68129528 68129563 -134198784 + L1MEd LINE L1 597 631 -5488 472 286 128 51 chr4 68129701 68130182 -134198165 + L1MEd LINE L1 771 1326 -4910 2619 156 10 2 chr4 68131894 68132304 -134196043 + MER1A DNA MER1_type 1 413 -116 22 106 0 0 chr4 68132632 68132717 -134195630 + AT_rich Low_complexity Low_complexity 1 85 0 23 68 0 0 chr4 68133992 68134036 -134194311 + AT_rich Low_complexity Low_complexity 1 44 0 25 51 0 0 chr4 68134585 68134624 -134193723 + AT_rich Low_complexity Low_complexity 1 39 0 410 300 102 24 chr4 68134911 68135204 -134193143 - L1ME4a LINE L1 -224 5897 5582 243 331 99 17 chr4 68135585 68135757 -134192590 - L2 LINE L2 -1 3312 3127 23 33 0 0 chr4 68136089 68136119 -134192228 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr4 68137254 68137284 -134191063 + AT_rich Low_complexity Low_complexity 1 30 0 338 341 104 0 chr4 68137675 68137848 -134190499 + MIR SINE MIR 66 256 -6 268 266 0 0 chr4 68137925 68137989 -134190358 - Tigger6 DNA MER2_type -1018 65 2 22 35 0 0 chr4 68138236 68138265 -134190082 + AT_rich Low_complexity Low_complexity 1 29 0 186 43 0 0 chr4 68139472 68139495 -134188852 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 584 233 37 34 chr4 68140054 68140290 -134188057 + MER61D LTR ERV1 351 790 -4 2760 277 51 49 chr4 68140294 68141888 -134186459 + MER61D-int LTR ERV1 19 1598 -6205 1541 220 7 3 chr4 68141927 68142227 -134186120 + MER61D-int LTR ERV1 2168 2468 -4623 324 298 33 0 chr4 68142226 68142347 -134186000 + HUERS-P3 LTR ERV1 8794 8918 -1 * 569 246 22 32 chr4 68142804 68142975 -134185372 + MER61D LTR ERV1 338 1237 -19 21 0 0 0 chr4 68143194 68143215 -134185132 + AT_rich Low_complexity Low_complexity 1 21 0 209 224 40 13 chr4 68144657 68144733 -134183614 + T-rich Low_complexity Low_complexity 6 83 0 1383 203 35 7 chr4 68144963 68145249 -134183098 - AluJb SINE Alu -18 294 1 310 373 0 8 chr4 68145551 68145685 -134182662 - L2 LINE L2 -301 3012 2880 21 36 0 0 chr4 68145736 68145764 -134182583 + AT_rich Low_complexity Low_complexity 1 28 0 217 300 64 43 chr4 68146110 68146250 -134182097 - L2 LINE L2 -2865 449 307 1480 176 20 37 chr4 68146714 68147010 -134181337 + AluJo SINE Alu 6 296 -16 928 109 95 7 chr4 68147189 68147336 -134181011 + THE1C LTR MaLR 216 375 0 25 31 0 0 chr4 68148994 68149026 -134179321 + AT_rich Low_complexity Low_complexity 1 32 0 1361 201 49 0 chr4 68149034 68149322 -134179025 + AluJb SINE Alu 1 302 -10 217 167 24 0 chr4 68149759 68149801 -134178546 + CT-rich Low_complexity Low_complexity 1 43 0 2009 127 13 3 chr4 68149821 68150136 -134178211 - L1PA14 LINE L1 -5 6156 5839 371 200 0 0 chr4 68150138 68150208 -134178139 - L1P LINE L1 -927 5219 5150 * 3850 150 2 25 chr4 68150206 68150889 -134177458 - L1PA14 LINE L1 -323 5838 5191 2316 71 0 0 chr4 68150889 68151196 -134177151 - AluY SINE Alu 0 307 1 3850 150 2 25 chr4 68151196 68151534 -134176813 - L1PA14 LINE L1 -970 5191 4847 2084 145 0 0 chr4 68152256 68152566 -134175781 - AluSx SINE Alu -2 310 1 1861 120 58 4 chr4 68154130 68154406 -134173941 - AluSg SINE Alu -14 296 6 2271 106 3 0 chr4 68154412 68154715 -134173632 - AluSp SINE Alu -9 304 1 31 0 0 0 chr4 68154823 68154854 -134173493 + AT_rich Low_complexity Low_complexity 1 31 0 6190 186 210 19 chr4 68154869 68156342 -134172005 + MER52A LTR ERV1 1 1754 -1 609 143 0 10 chr4 68157495 68157593 -134170754 + AluSg/x SINE Alu 188 284 -26 234 0 0 0 chr4 68157598 68157624 -134170723 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2338 86 13 0 chr4 68157670 68157971 -134170376 + AluY SINE Alu 1 305 -6 616 372 89 9 chr4 68158172 68158621 -134169726 - L2 LINE L2 -2 3311 2827 620 303 25 8 chr4 68158658 68158896 -134169451 + L2 LINE L2 2137 2378 -936 2543 254 60 67 chr4 68159050 68160180 -134168167 + L1MC4 LINE L1 6727 7849 -193 2071 133 0 3 chr4 68160180 68160482 -134167865 - AluSg SINE Alu -9 301 1 2543 254 60 67 chr4 68160482 68160675 -134167672 + L1MC4 LINE L1 7849 8042 0 286 329 0 0 chr4 68160789 68160871 -134167476 + L1MEc LINE L1 167 248 -6148 246 304 49 10 chr4 68160871 68160973 -134167374 + L2 LINE L2 2956 3061 -252 419 335 48 19 chr4 68161271 68161480 -134166867 - MIR SINE MIR -47 215 1 207 0 0 0 chr4 68162672 68162695 -134165652 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1348 167 4 4 chr4 68163059 68163286 -134165061 - AluSg/x SINE Alu 0 312 86 2053 101 45 0 chr4 68163448 68163682 -134164665 + AluSc SINE Alu 1 252 -57 183 42 0 0 chr4 68163682 68163706 -134164641 + (CACTG)n Simple_repeat Simple_repeat 1 24 0 2053 101 45 0 chr4 68163706 68163757 -134164590 + AluSc SINE Alu 252 299 -10 23 0 0 0 chr4 68164322 68164345 -134164002 + AT_rich Low_complexity Low_complexity 1 23 0 1647 168 126 23 chr4 68164428 68164816 -134163531 - MSTA LTR MaLR 0 428 1 8503 159 6 48 chr4 68164816 68166305 -134162042 - MSTA-int LTR MaLR 0 1580 167 1985 146 7 3 chr4 68166305 68166613 -134161734 + AluSq SINE Alu 1 309 -4 8503 159 6 48 chr4 68166613 68166772 -134161575 - MSTA-int LTR MaLR -1413 167 3 1639 175 143 13 chr4 68166774 68167152 -134161195 - MSTA LTR MaLR 0 428 2 1781 148 82 29 chr4 68167615 68167993 -134160354 + MER50 LTR ERV1 1 398 -336 22 0 0 73 chr4 68168326 68168367 -134159980 + AT_rich Low_complexity Low_complexity 1 38 0 7797 180 27 25 chr4 68168947 68170877 -134157470 - L1MA3 LINE L1 -3 7721 5796 1844 106 4 0 chr4 68170877 68171168 -134157179 - AluSx SINE Alu 0 326 35 7797 180 27 25 chr4 68171168 68171848 -134156499 - L1MA3 LINE L1 -1928 5796 4938 2171 90 0 0 chr4 68171848 68172127 -134156220 - AluSc SINE Alu -30 279 1 7797 180 27 25 chr4 68172127 68172417 -134155930 - L1MA3 LINE L1 -2786 4938 4650 227 195 58 0 chr4 68172563 68172650 -134155697 + (GTGTG)n Simple_repeat Simple_repeat 4 95 0 3394 223 37 10 chr4 68172981 68174642 -134153705 - L1MA3 LINE L1 -2879 4686 2988 * 4939 203 25 10 chr4 68174626 68175562 -134152785 - L1MA3 LINE L1 -6469 1096 147 23 0 0 0 chr4 68176707 68176730 -134151617 + AT_rich Low_complexity Low_complexity 1 23 0 2075 127 3 0 chr4 68177021 68177312 -134151035 - AluSq SINE Alu -21 292 1 1274 308 31 31 chr4 68177693 68178249 -134150098 + L1MCb LINE L1 1 556 -5489 1865 261 129 35 chr4 68178360 68179772 -134148575 + L1MCb LINE L1 570 2124 -4440 1831 53 0 22 chr4 68179896 68180122 -134148225 - AluY SINE Alu -5 306 86 288 0 0 0 chr4 68180177 68180209 -134148138 + (TA)n Simple_repeat Simple_repeat 1 32 0 27 49 0 0 chr4 68180210 68180251 -134148096 + AT_rich Low_complexity Low_complexity 1 41 0 441 0 0 0 chr4 68180259 68180308 -134148039 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 793 243 87 38 chr4 68180328 68180674 -134147673 + L1M4 LINE L1 3599 3961 -2185 760 206 92 139 chr4 68180663 68181197 -134147150 + L1MC3 LINE L1 5895 6361 -1424 * 1136 114 120 0 chr4 68181249 68181424 -134146923 + AluSg SINE Alu 1 196 -114 23 33 0 0 chr4 68181432 68181462 -134146885 + AT_rich Low_complexity Low_complexity 1 30 0 281 132 0 19 chr4 68181660 68181713 -134146634 + (TTCC)n Simple_repeat Simple_repeat 3 54 0 313 262 14 138 chr4 68181718 68181993 -134146354 - HAL1 LINE L1 -621 1886 1646 277 209 70 12 chr4 68182172 68182258 -134146089 - MLT2B1 LTR ERVL -19 501 411 3317 93 159 34 chr4 68182321 68182647 -134145700 + MER41B LTR ERV1 1 285 -350 2154 129 0 0 chr4 68182647 68182926 -134145421 + AluSx SINE Alu 1 282 -30 303 28 0 0 chr4 68182926 68182962 -134145385 + (CA)n Simple_repeat Simple_repeat 1 36 0 2154 129 0 0 chr4 68182962 68182992 -134145355 + AluSx SINE Alu 281 310 -2 3317 93 159 34 chr4 68182992 68183223 -134145124 + MER41B LTR ERV1 285 628 -7 47 89 0 0 chr4 68183284 68183408 -134144939 + AT_rich Low_complexity Low_complexity 1 124 0 215 31 31 0 chr4 68183850 68183882 -134144465 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 345 109 0 0 chr4 68183881 68183936 -134144411 + (TA)n Simple_repeat Simple_repeat 1 55 0 24 32 0 0 chr4 68184723 68184754 -134143593 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr4 68185381 68185410 -134142937 + AT_rich Low_complexity Low_complexity 1 29 0 2252 243 60 21 chr4 68186158 68186425 -134141922 - L1MD2 LINE L1 -183 6176 5921 4230 98 5 3 chr4 68186425 68187024 -134141323 + MER4A LTR ERV1 1 600 0 2252 243 60 21 chr4 68187024 68187472 -134140875 - L1MD2 LINE L1 -438 5921 5433 374 310 59 46 chr4 68187504 68187743 -134140604 + MER101B LTR ERV1 58 299 -271 3381 186 110 13 chr4 68187933 68188680 -134139667 - LTR1B LTR ERV1 0 826 8 1694 243 61 11 chr4 68188701 68189455 -134138892 - L1MD2 LINE L1 -744 5402 4652 772 264 26 35 chr4 68189463 68189694 -134138653 + MLT1A2 LTR MaLR 12 240 -134 1294 254 5 51 chr4 68189701 68190075 -134138272 + MLT1A1 LTR MaLR 9 365 0 375 200 0 0 chr4 68190075 68190150 -134138197 + MLT1A1-int LTR MaLR 1 75 -1660 3791 227 44 58 chr4 68190177 68191221 -134137126 + MLT1A1-int LTR MaLR 144 1173 -562 381 293 19 0 chr4 68191360 68191466 -134136881 + LTR25 LTR ERV1 251 358 -436 240 203 0 130 chr4 68191468 68191537 -134136810 + MER61E LTR ERV1 100 159 -410 876 216 12 6 chr4 68191629 68191818 -134136529 + MER61E LTR ERV1 341 606 -6 3034 231 17 3 chr4 68191836 68192438 -134135909 + MLT1A1-int LTR MaLR 1121 1730 -5 1303 200 69 39 chr4 68192447 68192777 -134135570 + MLT1A1 LTR MaLR 19 419 -7 1832 157 3 31 chr4 68192833 68193151 -134135196 - AluSx SINE Alu -1 311 3 866 285 36 12 chr4 68193161 68193498 -134134849 - L1MD2 LINE L1 -2074 4072 3728 25 75 0 0 chr4 68196368 68196421 -134131926 + AT_rich Low_complexity Low_complexity 1 53 0 180 152 0 0 chr4 68196895 68196928 -134131419 + (TTA)n Simple_repeat Simple_repeat 3 35 0 2153 115 0 0 chr4 68197397 68197685 -134130662 + AluSx SINE Alu 1 288 -24 212 59 29 0 chr4 68197685 68197719 -134130628 + (TA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr4 68198731 68198752 -134129595 + AT_rich Low_complexity Low_complexity 1 21 0 396 164 19 29 chr4 68198803 68198907 -134129440 - L1MB2 LINE L1 0 6171 6069 21 0 0 0 chr4 68199067 68199088 -134129259 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr4 68200178 68200213 -134128134 + AT_rich Low_complexity Low_complexity 1 35 0 8440 120 18 16 chr4 68202462 68203504 -134124843 - HSMAR1 DNA Mariner 0 1287 241 2295 98 3 9 chr4 68203504 68203819 -134124528 - AluSq SINE Alu 0 313 1 8440 120 18 16 chr4 68203819 68204059 -134124288 - HSMAR1 DNA Mariner -1046 241 3 21 0 0 0 chr4 68204166 68204187 -134124160 + AT_rich Low_complexity Low_complexity 1 21 0 391 266 117 5 chr4 68204231 68204419 -134123928 - Charlie4 DNA MER1_type -6 1955 1747 402 283 73 11 chr4 68204479 68204656 -134123691 - Charlie4 DNA MER1_type -1744 217 30 230 348 33 22 chr4 68206447 68206539 -134121808 - LTR16A LTR ERVL -267 183 91 1744 311 67 50 chr4 68206700 68208091 -134120256 - HERV16 LTR ERVL -3122 1874 338 307 370 120 5 chr4 68208355 68208555 -134119792 - LTR16A LTR ERVL -3 447 225 276 324 92 14 chr4 68208601 68208743 -134119604 - LTR16A LTR ERVL -289 161 9 26 30 0 0 chr4 68209812 68209845 -134118502 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4 68210439 68210467 -134117880 + AT_rich Low_complexity Low_complexity 1 28 0 5556 137 36 11 chr4 68211911 68212111 -134116236 + L1MA5A LINE L1 5291 5485 -812 1154 148 71 125 chr4 68212111 68212422 -134115925 + AluJo SINE Alu 4 297 -5 5556 137 36 11 chr4 68212422 68213204 -134115143 + L1MA5A LINE L1 5485 6297 0 26 74 0 0 chr4 68213501 68213555 -134114792 + AT_rich Low_complexity Low_complexity 1 54 0 229 197 0 33 chr4 68213563 68213624 -134114723 + L1MC4 LINE L1 6645 6703 -1339 * 237 204 0 0 chr4 68213596 68213650 -134114697 - L1MC4 LINE L1 -1339 6703 6650 27 0 0 0 chr4 68213852 68213879 -134114468 + AT_rich Low_complexity Low_complexity 1 27 0 252 237 0 0 chr4 68213989 68214048 -134114299 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 309 270 11 11 chr4 68214307 68214396 -134113951 + LTR33A LTR ERVL 433 521 -2 29 47 0 0 chr4 68215107 68215150 -134113197 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 68216988 68217010 -134111337 + AT_rich Low_complexity Low_complexity 1 22 0 1021 91 0 0 chr4 68217381 68217513 -134110834 + AluSp SINE Alu 1 132 -181 2223 108 3 0 chr4 68217515 68217820 -134110527 + AluSp SINE Alu 1 306 -7 28 29 0 0 chr4 68218081 68218116 -134110231 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chr4 68218278 68218308 -134110039 + AT_rich Low_complexity Low_complexity 1 30 0 1731 215 2 73 chr4 68218812 68219263 -134109084 - MER52A LTR ERV1 0 1755 1337 252 137 0 0 chr4 68219312 68219363 -134108984 + (TTAG)n Simple_repeat Simple_repeat 2 52 0 260 359 23 15 chr4 68219375 68219506 -134108841 + L2 LINE L2 3180 3311 -2 1002 191 28 96 chr4 68219752 68220261 -134108086 - MER52A LTR ERV1 -395 1232 437 250 343 0 0 chr4 68220553 68220626 -134107721 + MIR3 SINE MIR 82 154 -54 23 0 0 0 chr4 68220739 68220762 -134107585 + AT_rich Low_complexity Low_complexity 1 23 0 1611 201 31 3 chr4 68220762 68221086 -134107261 - MER50 LTR ERV1 -401 333 1 23 33 0 0 chr4 68221111 68221141 -134107206 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 68221481 68221503 -134106844 + AT_rich Low_complexity Low_complexity 1 22 0 2193 109 7 0 chr4 68221512 68221805 -134106542 + AluSc SINE Alu 1 295 -14 29 47 0 0 chr4 68221814 68221857 -134106490 + AT_rich Low_complexity Low_complexity 1 43 0 2116 215 37 124 chr4 68221857 68222768 -134105579 + MER4D LTR ERV1 1 832 -40 22 0 0 0 chr4 68222802 68222824 -134105523 + AT_rich Low_complexity Low_complexity 1 22 0 243 233 62 108 chr4 68222832 68222961 -134105386 - L1ME3A LINE L1 -105 6065 5943 748 231 0 6 chr4 68223483 68223639 -134104708 + Charlie3 DNA MER1_type 2552 2706 -4 10100 54 7 0 chr4 68223837 68225141 -134103206 - L1PA5 LINE L1 -2295 3851 2539 12425 45 0 10 chr4 68225141 68227467 -134100880 + L1PA5 LINE L1 3834 6146 -8 228 338 168 25 chr4 68227518 68228047 -134100300 + L2 LINE L2 540 1144 -2170 7120 205 55 61 chr4 68228093 68229338 -134099009 + MER52A LTR ERV1 1 1235 -520 1918 145 3 17 chr4 68229338 68229634 -134098713 + AluSp SINE Alu 1 292 -21 7120 205 55 61 chr4 68229634 68230151 -134098196 + MER52A LTR ERV1 1235 1753 -2 196 303 67 39 chr4 68230186 68230364 -134097983 + L2 LINE L2 3092 3274 -39 24 0 0 29 chr4 68230438 68230453 -134097894 + AT_rich Low_complexity Low_complexity 1 15 -19 240 35 0 0 chr4 68230453 68230482 -134097865 + (TG)n Simple_repeat Simple_repeat 2 30 0 24 0 0 29 chr4 68230482 68230501 -134097846 + AT_rich Low_complexity Low_complexity 15 34 0 267 79 0 0 chr4 68231587 68231625 -134096722 + (CA)n Simple_repeat Simple_repeat 2 39 0 30 0 0 0 chr4 68231970 68232000 -134096347 + AT_rich Low_complexity Low_complexity 1 30 0 357 240 33 7 chr4 68232176 68232326 -134096021 + (TA)n Simple_repeat Simple_repeat 2 155 0 6352 21 9 0 chr4 68232988 68233732 -134094615 + L1PA4 LINE L1 5404 6154 -1 216 0 0 0 chr4 68233927 68233951 -134094396 + (A)n Simple_repeat Simple_repeat 1 24 0 233 224 17 0 chr4 68234008 68234066 -134094281 + (CA)n Simple_repeat Simple_repeat 2 60 0 3451 150 12 11 chr4 68234222 68234781 -134093566 - THE1-int LTR MaLR -461 1119 560 236 295 137 21 chr4 68235362 68235457 -134092890 + L2 LINE L2 2282 2387 -927 1558 166 42 70 chr4 68235468 68235854 -134092493 - THE1C LTR MaLR 0 375 1 357 104 30 30 chr4 68235859 68235926 -134092421 - THE1C-int LTR MaLR -5 1575 1509 1001 158 17 6 chr4 68235928 68236105 -134092242 - THE1C-int LTR MaLR -1401 179 1 1437 174 69 44 chr4 68236106 68236469 -134091878 - THE1C LTR MaLR -1 374 3 351 321 35 61 chr4 68236482 68236825 -134091522 + L2 LINE L2 2422 2755 -559 33 73 0 0 chr4 68237085 68237153 -134091194 + AT_rich Low_complexity Low_complexity 1 68 0 2077 122 7 0 chr4 68237155 68237450 -134090897 - AluSp SINE Alu -16 297 1 1110 187 76 160 chr4 68238420 68238869 -134089478 + MLT2D LTR ERVL 1 411 -3 2238 141 24 42 chr4 68239022 68239314 -134089033 + L1MA4A LINE L1 5853 6136 -167 1431 180 58 11 chr4 68239314 68239592 -134088755 - AluJo SINE Alu -21 291 1 2238 141 24 42 chr4 68239592 68239753 -134088594 + L1MA4A LINE L1 6136 6298 -5 284 100 0 20 chr4 68240395 68240445 -134087902 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 638 198 24 8 chr4 68240908 68241034 -134087313 - FLAM_A SINE Alu -2 131 4 384 366 82 49 chr4 68241402 68242202 -134086145 - L2 LINE L2 -685 2629 1803 2066 92 24 14 chr4 68243536 68243829 -134084518 + AluY SINE Alu 1 296 -15 31 0 0 0 chr4 68243840 68243871 -134084476 + AT_rich Low_complexity Low_complexity 1 31 0 3726 198 25 49 chr4 68243897 68244876 -134083471 + LTR5 LTR ERVK 1 955 -14 22 35 0 0 chr4 68245002 68245031 -134083316 + AT_rich Low_complexity Low_complexity 1 29 0 23 78 0 0 chr4 68245597 68245648 -134082699 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr4 68246341 68246370 -134081977 + AT_rich Low_complexity Low_complexity 1 29 0 2386 293 10 32 chr4 68248548 68249319 -134079028 + L1PA16 LINE L1 1 754 -6033 12509 232 31 17 chr4 68249470 68251354 -134076993 + L1PA16 LINE L1 1357 3212 -3605 4415 61 26 3 chr4 68251354 68251932 -134076415 - LTR10C LTR ERV1 0 591 1 12509 232 31 17 chr4 68251932 68255417 -134072930 + L1PA16 LINE L1 3212 6812 -5 23 33 0 0 chr4 68255417 68255447 -134072900 + AT_rich Low_complexity Low_complexity 1 30 0 2169 93 0 4 chr4 68256286 68256613 -134071734 - AluSg SINE Alu 0 326 1 568 301 49 29 chr4 68257608 68257854 -134070493 + MIR SINE MIR 12 262 0 21 36 0 0 chr4 68257953 68257981 -134070366 + AT_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr4 68259213 68259259 -134069088 + AT_rich Low_complexity Low_complexity 1 46 0 234 180 68 50 chr4 68259264 68259425 -134068922 + (TTAAA)n Simple_repeat Simple_repeat 2 165 0 26 0 0 0 chr4 68259593 68259619 -134068728 + AT_rich Low_complexity Low_complexity 1 26 0 338 256 28 83 chr4 68259699 68259879 -134068468 + LTR54B LTR ERV1 327 496 -2 22 56 0 0 chr4 68259996 68260032 -134068315 + AT_rich Low_complexity Low_complexity 1 36 0 28 71 0 0 chr4 68261214 68261270 -134067077 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr4 68261567 68261589 -134066758 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 68261891 68261913 -134066434 + AT_rich Low_complexity Low_complexity 1 22 0 597 82 0 70 chr4 68261935 68262106 -134066241 + (TA)n Simple_repeat Simple_repeat 2 160 0 231 226 0 0 chr4 68262636 68262689 -134065658 - L1M4 LINE L1 -3138 3008 2956 1549 125 14 30 chr4 68262697 68263189 -134065158 + MER41A LTR ERV1 1 554 0 3468 177 9 26 chr4 68263189 68263233 -134065114 + MER41A-int LTR ERV1 1 44 -5902 1900 163 53 28 chr4 68263233 68263588 -134064759 + THE1B LTR MaLR 1 364 0 10659 123 5 0 chr4 68263588 68265160 -134063187 + THE1B-int LTR MaLR 1 1580 0 1970 157 33 30 chr4 68265160 68265523 -134062824 + THE1B LTR MaLR 1 364 0 3468 177 9 26 chr4 68265523 68266127 -134062220 + MER41A-int LTR ERV1 41 640 -5306 3246 158 131 19 chr4 68266113 68266740 -134061607 + MER41A-int LTR ERV1 1703 2399 -5138 * 394 136 0 4 chr4 68266715 68266825 -134061522 + MER41B-int LTR ERV1 1866 2014 -3932 * 3130 145 69 20 chr4 68266820 68267540 -134060807 + MER41B-int LTR ERV1 2163 3100 -3163 * 11221 126 45 7 chr4 68267531 68269718 -134058629 + MER41B-int LTR ERV1 2860 5944 -2 497 93 27 0 chr4 68269718 68269793 -134058554 + MER41B LTR ERV1 1 77 -558 1770 143 0 0 chr4 68270187 68270488 -134057859 + AluSg SINE Alu 24 324 0 369 0 0 0 chr4 68272063 68272104 -134056243 + (TG)n Simple_repeat Simple_repeat 2 42 0 25 51 0 0 chr4 68273585 68273624 -134054723 + AT_rich Low_complexity Low_complexity 1 39 0 4501 196 40 44 chr4 68273655 68273804 -134054543 + L1M4c LINE L1 1339 1487 -4895 2337 58 0 7 chr4 68273804 68274095 -134054252 + AluY SINE Alu 1 289 -22 4501 196 40 44 chr4 68274095 68275172 -134053175 + L1M4c LINE L1 1487 2562 -3820 199 255 43 0 chr4 68276038 68276085 -134052262 + MIR3 SINE MIR 115 163 -45 27 0 0 0 chr4 68276224 68276251 -134052096 + AT_rich Low_complexity Low_complexity 1 27 0 2082 61 4 22 chr4 68278208 68278486 -134049861 - AluY SINE Alu -15 296 24 25 0 0 0 chr4 68278829 68278854 -134049493 + AT_rich Low_complexity Low_complexity 1 25 0 702 258 57 34 chr4 68279796 68280005 -134048342 + MER58A DNA MER1_type 10 223 -1 241 385 15 15 chr4 68280332 68280462 -134047885 - MLT2E LTR ERVL -163 465 336 725 298 82 52 chr4 68280728 68281131 -134047216 - MLT1G LTR MaLR -66 524 103 2592 158 23 64 chr4 68281131 68281649 -134046698 - LOR1a LTR ERV1 0 497 1 725 298 82 52 chr4 68281649 68281721 -134046626 - MLT1G LTR MaLR -487 103 35 25 0 0 0 chr4 68282236 68282261 -134046086 + AT_rich Low_complexity Low_complexity 1 25 0 1038 333 143 24 chr4 68282296 68282437 -134045910 - L2 LINE L2 -2 3311 3188 203 79 26 0 chr4 68282437 68282475 -134045872 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 1038 333 143 24 chr4 68282475 68283149 -134045198 - L2 LINE L2 -125 3188 2400 26 0 0 0 chr4 68283768 68283794 -134044553 + AT_rich Low_complexity Low_complexity 1 26 0 2376 189 37 23 chr4 68284143 68284713 -134043634 + L1 LINE L1 3968 4545 -1601 696 122 32 24 chr4 68284713 68284836 -134043511 - Tigger1 DNA MER2_type -1691 727 604 * 1996 199 11 0 chr4 68284828 68285190 -134043157 + Tigger1 DNA MER2_type 242 607 -1811 1171 169 58 25 chr4 68285206 68285449 -134042898 - Tigger1 DNA MER2_type -2166 252 2 521 291 72 35 chr4 68285510 68285829 -134042518 - L1ME3 LINE L1 -40 6122 5792 185 0 0 39 chr4 68287455 68287481 -134040866 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 1797 146 0 14 chr4 68289085 68289373 -134038974 + AluSx SINE Alu 1 284 -28 262 276 94 0 chr4 68289383 68289510 -134038837 + L1M4 LINE L1 2741 2879 -3267 7276 50 0 0 chr4 68289517 68291186 -134037161 - L1PA5 LINE L1 -4 6150 4477 16660 42 0 1 chr4 68291186 68293610 -134034737 + L1PA5 LINE L1 1946 4486 -1660 595 246 137 19 chr4 68293600 68293921 -134034426 + L1M4 LINE L1 2861 3219 -2927 * 313 336 59 29 chr4 68294045 68294283 -134034064 - L1M4 LINE L1 -2527 3619 3375 28 29 0 0 chr4 68294398 68294433 -134033914 + AT_rich Low_complexity Low_complexity 1 35 0 811 291 124 23 chr4 68294581 68295587 -134032760 - L1M4 LINE L1 -2880 3266 2159 1100 199 38 38 chr4 68295621 68295913 -134032434 - AluJo SINE Alu 0 312 21 703 287 69 21 chr4 68295926 68296270 -134032077 - MSTD LTR MaLR -1 364 10 255 176 0 39 chr4 68296262 68296313 -134032034 - MSTD LTR MaLR -345 51 3 * 30 48 0 16 chr4 68296499 68296513 -134031834 + AT_rich Low_complexity Low_complexity 1 14 -47 2678 14 0 0 chr4 68296513 68296809 -134031538 - AluY SINE Alu -15 296 1 30 48 0 16 chr4 68296809 68296856 -134031491 + AT_rich Low_complexity Low_complexity 14 61 0 193 320 0 0 chr4 68296871 68296921 -134031426 - MER5A DNA MER1_type -3 186 137 1269 176 9 9 chr4 68297378 68297599 -134030748 + MER50 LTR ERV1 1 221 -513 1276 195 4 43 chr4 68297600 68297877 -134030470 + MER50 LTR ERV1 432 697 -37 668 248 44 8 chr4 68298472 68298674 -134029673 + MER61D LTR ERV1 338 483 -18 6457 266 51 39 chr4 68298706 68301519 -134026828 + MER61D-int LTR ERV1 28 2776 -4220 5663 147 16 8 chr4 68301512 68302416 -134025931 + MER52-int LTR ERV1 4315 5225 -1866 * 266 265 52 52 chr4 68303538 68303674 -134024673 + MER52-int LTR ERV1 4274 4409 -545 722 253 70 28 chr4 68303786 68304078 -134024269 + MER52-int LTR ERV1 6839 7090 -1 674 234 29 4 chr4 68304548 68304708 -134023639 + MER61D LTR ERV1 338 544 -18 27 49 0 0 chr4 68305811 68305852 -134022495 + AT_rich Low_complexity Low_complexity 1 41 0 3112 181 69 59 chr4 68305878 68306163 -134022184 - MER44D DNA MER2_type -1882 705 424 1515 190 46 30 chr4 68306163 68306532 -134021815 + THE1C LTR MaLR 1 375 0 3112 181 69 59 chr4 68306532 68306943 -134021404 - MER44D DNA MER2_type -2163 424 2 2006 128 7 7 chr4 68307021 68307326 -134021021 + AluSp SINE Alu 4 308 -5 249 276 49 81 chr4 68308338 68308461 -134019886 + L2 LINE L2 3190 3308 -5 23 68 0 0 chr4 68308666 68308710 -134019637 + AT_rich Low_complexity Low_complexity 1 44 0 399 332 92 13 chr4 68309459 68309697 -134018650 + MIR SINE MIR 6 262 0 180 0 0 0 chr4 68309948 68309968 -134018379 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1434 83 0 0 chr4 68309968 68310160 -134018187 - L1PA5 LINE L1 -12 6142 5951 222 37 0 0 chr4 68310769 68310796 -134017551 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 274 200 67 33 chr4 68311070 68311160 -134017187 + MLT1I LTR MaLR 112 204 -205 24 67 0 0 chr4 68311883 68311928 -134016419 + AT_rich Low_complexity Low_complexity 1 45 0 328 328 60 8 chr4 68312806 68312940 -134015407 - L2 LINE L2 -2811 503 363 228 67 0 0 chr4 68314784 68314814 -134013533 + (TG)n Simple_repeat Simple_repeat 1 30 0 590 152 45 0 chr4 68314880 68314992 -134013355 + L1MA4 LINE L1 6176 6292 -8 23 0 0 0 chr4 68315510 68315533 -134012814 + AT_rich Low_complexity Low_complexity 1 23 0 315 339 97 30 chr4 68315553 68315892 -134012455 + L2 LINE L2 2344 2705 -609 1883 209 7 32 chr4 68315904 68316032 -134012315 - L1MC3 LINE L1 -17 7768 7638 1592 210 3 0 chr4 68316032 68316342 -134012005 - AluJb SINE Alu 0 312 2 1883 209 7 32 chr4 68316342 68316677 -134011670 - L1MC3 LINE L1 -147 7638 7317 318 214 0 92 chr4 68316679 68316777 -134011570 + LTR38B LTR ERV1 3 91 -519 2725 16 0 6 chr4 68316777 68317090 -134011257 + AluYb8 SINE Alu 1 311 -7 256 240 23 101 chr4 68317117 68317246 -134011101 + LTR38B LTR ERV1 38 156 -454 235 284 0 15 chr4 68317294 68317361 -134010986 + LTR38 LTR ERV1 129 194 -362 286 218 34 75 chr4 68317642 68317778 -134010569 + LTR38B LTR ERV1 483 611 0 380 213 119 31 chr4 68317790 68317950 -134010397 - L1MDa LINE L1 -4064 2476 2303 * 876 224 67 73 chr4 68317945 68318156 -134010191 + L1MDa LINE L1 2476 2687 -3853 1942 149 0 0 chr4 68318156 68318461 -134009886 + AluSx SINE Alu 3 307 0 876 224 67 73 chr4 68318461 68318766 -134009581 + L1MDa LINE L1 2687 2987 -3553 916 303 50 18 chr4 68318835 68319558 -134008789 + L1MDa LINE L1 3154 3899 -2641 1684 128 3 62 chr4 68319954 68320259 -134008088 + AluY SINE Alu 1 287 -24 21 0 0 0 chr4 68320374 68320395 -134007952 + AT_rich Low_complexity Low_complexity 1 21 0 434 18 18 0 chr4 68320691 68320746 -134007601 + (TG)n Simple_repeat Simple_repeat 2 57 0 204 318 28 0 chr4 68321830 68321937 -134006410 + (CATATA)n Simple_repeat Simple_repeat 4 113 0 2431 62 0 3 chr4 68323104 68323410 -134004937 + AluY SINE Alu 1 305 -6 23 0 0 0 chr4 68324329 68324352 -134003995 + AT_rich Low_complexity Low_complexity 1 23 0 411 296 96 41 chr4 68324487 68324946 -134003401 + L1MD2 LINE L1 1256 1739 -4657 768 234 43 25 chr4 68325431 68325709 -134002638 + L1MD2 LINE L1 5080 5362 -853 1460 249 76 29 chr4 68325712 68326226 -134002121 + L1MD2 LINE L1 5716 6253 -175 203 255 0 20 chr4 68327108 68327159 -134001188 - L2 LINE L2 0 3313 3264 38 68 0 0 chr4 68327336 68327409 -134000938 + AT_rich Low_complexity Low_complexity 1 73 0 1829 190 115 7 chr4 68328109 68328525 -133999822 + LOR1b LTR ERV1 1 461 0 198 0 0 0 chr4 68328561 68328583 -133999764 + (A)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chr4 68328901 68328936 -133999411 + AT_rich Low_complexity Low_complexity 1 35 0 1543 191 30 13 chr4 68329228 68329531 -133998816 + AluJb SINE Alu 4 311 -1 962 346 130 10 chr4 68329641 68330250 -133998097 - L2 LINE L2 -594 2720 2039 180 111 0 0 chr4 68330496 68330523 -133997824 + (TTA)n Simple_repeat Simple_repeat 3 29 0 201 171 0 0 chr4 68330871 68330906 -133997441 + (TA)n Simple_repeat Simple_repeat 1 35 0 234 259 52 0 chr4 68330962 68331020 -133997327 + MLT1E2 LTR MaLR 1 61 -593 568 283 112 17 chr4 68331087 68331320 -133997027 + MLT1E2 LTR MaLR 137 391 -235 805 96 59 37 chr4 68331357 68331492 -133996855 + LTR10E LTR ERV1 481 618 -15 550 309 103 0 chr4 68331489 68331693 -133996654 + MLT1E2 LTR MaLR 396 620 -6 * 410 376 105 27 chr4 68332059 68332317 -133996030 + MER115 DNA AcHobo 88 365 -328 275 222 9 74 chr4 68332352 68332459 -133995888 + MER115 DNA AcHobo 496 595 -98 733 334 138 13 chr4 68332459 68332851 -133995496 + MLT1H LTR MaLR 1 441 -108 220 318 24 12 chr4 68333561 68333646 -133994701 - L2 LINE L2 -1 3271 3186 481 244 34 94 chr4 68334776 68335010 -133993337 + L1ME3A LINE L1 5951 6170 0 699 203 16 0 chr4 68336628 68336756 -133991591 + FLAM_C SINE Alu 1 130 -13 417 284 80 74 chr4 68337247 68337998 -133990349 + L1MEd LINE L1 364 1117 -5002 238 171 0 0 chr4 68338503 68338538 -133989809 + L1MEd LINE L1 597 631 -5488 472 286 128 51 chr4 68338676 68339157 -133989190 + L1MEd LINE L1 771 1326 -4910 2771 9 0 13 chr4 68339845 68340162 -133988185 + AluYb8 SINE Alu 1 313 -5 804 186 31 0 chr4 68341199 68341360 -133986987 + Charlie3 DNA MER1_type 1 166 -2544 273 29 0 0 chr4 68341750 68341784 -133986563 + (TA)n Simple_repeat Simple_repeat 2 35 0 3976 37 0 0 chr4 68342110 68342593 -133985754 - L1PA4 LINE L1 -2 6153 5671 28 29 0 0 chr4 68342609 68342644 -133985703 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 68343095 68343118 -133985229 + AT_rich Low_complexity Low_complexity 1 23 0 34 55 0 0 chr4 68343516 68343571 -133984776 + AT_rich Low_complexity Low_complexity 1 55 0 31 0 0 0 chr4 68344212 68344243 -133984104 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 68344390 68344414 -133983933 + AT_rich Low_complexity Low_complexity 1 24 0 852 225 0 5 chr4 68345981 68346168 -133982179 + AluJb SINE Alu 1 186 -126 180 0 0 0 chr4 68346189 68346209 -133982138 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 307 91 0 0 chr4 68346493 68346537 -133981810 + U5 snRNA snRNA 1 44 -72 183 205 0 0 chr4 68346641 68346680 -133981667 + (TA)n Simple_repeat Simple_repeat 1 39 0 483 18 0 0 chr4 68346929 68346985 -133981362 + (CA)n Simple_repeat Simple_repeat 2 57 0 230 182 159 0 chr4 68346985 68347029 -133981318 - Tigger2a DNA MER2_type -3 441 391 2175 161 23 49 chr4 68347042 68347514 -133980833 - L1MA4 LINE L1 -6 7356 6897 8245 185 24 41 chr4 68347515 68349877 -133978470 - L1MA4 LINE L1 -563 6802 4468 655 51 83 6 chr4 68349889 68350045 -133978302 + (TA)n Simple_repeat Simple_repeat 1 168 0 226 97 0 0 chr4 68350045 68350076 -133978271 + (CA)n Simple_repeat Simple_repeat 1 31 0 8143 215 51 100 chr4 68350097 68353773 -133974574 - L1MA4 LINE L1 -3682 3526 1 2031 124 22 102 chr4 68353786 68354198 -133974149 - Tigger2a DNA MER2_type -55 379 1 5420 167 47 3 chr4 68354458 68355457 -133972890 - L1MC1 LINE L1 -1 6332 5290 431 226 0 10 chr4 68355452 68355554 -133972793 - L1MC1 LINE L1 -2228 3918 3818 * 4772 231 40 87 chr4 68355563 68357489 -133970858 - L1M4 LINE L1 -856 5290 3455 499 390 18 7 chr4 68358056 68358330 -133970017 + MLT1I LTR MaLR 88 364 -45 466 320 29 0 chr4 68358983 68359158 -133969189 + L2 LINE L2 2183 2362 -952 706 327 109 26 chr4 68359658 68360007 -133968340 - MLT1I LTR MaLR 0 409 32 270 376 80 14 chr4 68360736 68361023 -133967324 - MLT1I LTR MaLR -23 386 81 24 53 0 0 chr4 68361367 68361405 -133966942 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr4 68361459 68361481 -133966866 + AT_rich Low_complexity Low_complexity 1 22 0 448 279 59 46 chr4 68362169 68362388 -133965959 - MIR SINE MIR -38 224 3 308 319 69 12 chr4 68362425 68362585 -133965762 - MIR SINE MIR -10 252 84 1894 147 3 26 chr4 68362605 68362917 -133965430 - AluSx SINE Alu -7 305 1 4947 174 37 14 chr4 68363357 68364651 -133963696 - L1PA15 LINE L1 0 6165 4854 580 168 72 8 chr4 68364641 68364766 -133963581 + L1PA15 LINE L1 4708 4840 -1306 * 1240 208 75 91 chr4 68365101 68365391 -133962956 + MLT1A1 LTR MaLR 11 295 -70 406 213 138 0 chr4 68365391 68365485 -133962862 - U6 snRNA snRNA 0 107 1 1240 208 75 91 chr4 68365485 68365555 -133962792 + MLT1A1 LTR MaLR 295 365 0 189 0 0 0 chr4 68365596 68365617 -133962730 + (TG)n Simple_repeat Simple_repeat 2 22 0 23 54 0 0 chr4 68365717 68365754 -133962593 + AT_rich Low_complexity Low_complexity 1 37 0 2229 191 24 5 chr4 68365969 68366389 -133961958 + MSTA LTR MaLR 1 428 0 7958 191 37 28 chr4 68366389 68366707 -133961640 + MSTA-int LTR MaLR 17 331 -1320 1179 117 5 44 chr4 68366707 68366912 -133961435 - MER107 DNA MER1_type 0 197 1 7958 191 37 28 chr4 68366912 68368213 -133960134 + MSTA-int LTR MaLR 331 1651 0 2559 144 22 0 chr4 68368216 68368633 -133959714 + MSTA LTR MaLR 3 428 0 563 293 122 4 chr4 68369933 68370196 -133958151 - MER5C DNA MER1_type -2 322 29 519 360 70 29 chr4 68370535 68371062 -133957285 + L2 LINE L2 1797 2345 -969 234 105 0 0 chr4 68371114 68371152 -133957195 + (CAAG)n Simple_repeat Simple_repeat 2 39 0 252 0 0 0 chr4 68371172 68371200 -133957147 + (CA)n Simple_repeat Simple_repeat 1 28 0 266 336 8 15 chr4 68371452 68371583 -133956764 + GA-rich Low_complexity Low_complexity 2 131 0 316 283 91 0 chr4 68371634 68371733 -133956614 - MIR SINE MIR -96 166 59 23 0 0 0 chr4 68372148 68372171 -133956176 + AT_rich Low_complexity Low_complexity 1 23 0 470 326 83 21 chr4 68372628 68372916 -133955431 - L2 LINE L2 -3 3310 3005 * 1450 323 89 20 chr4 68372913 68373843 -133954504 - L2 LINE L2 -559 2755 1697 195 42 0 0 chr4 68373862 68373886 -133954461 + (TG)n Simple_repeat Simple_repeat 2 25 0 218 335 49 78 chr4 68374231 68374476 -133953871 - MIR SINE MIR 0 262 25 23 0 0 0 chr4 68374640 68374663 -133953684 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr4 68375182 68375207 -133953140 + (TG)n Simple_repeat Simple_repeat 2 26 0 52 64 0 0 chr4 68375461 68375555 -133952792 + AT_rich Low_complexity Low_complexity 1 94 0 25 51 0 0 chr4 68376116 68376155 -133952192 + AT_rich Low_complexity Low_complexity 1 39 0 225 94 0 0 chr4 68376777 68376809 -133951538 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 222 231 19 0 chr4 68377527 68377579 -133950768 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 26 74 0 0 chr4 68378216 68378270 -133950077 + AT_rich Low_complexity Low_complexity 1 54 0 719 268 176 37 chr4 68378316 68378696 -133949651 + L2 LINE L2 2416 2848 -466 26 0 0 0 chr4 68378872 68378898 -133949449 + AT_rich Low_complexity Low_complexity 1 26 0 2180 112 3 0 chr4 68378907 68379212 -133949135 + AluSg SINE Alu 1 306 -4 1856 261 71 20 chr4 68379214 68379345 -133949002 + L1MD3 LINE L1 6882 7005 -990 275 85 21 0 chr4 68379345 68379392 -133948955 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 1856 261 71 20 chr4 68379392 68380066 -133948281 + L1MD3 LINE L1 7005 7987 -8 39 0 0 0 chr4 68380382 68380421 -133947926 + AT_rich Low_complexity Low_complexity 1 39 0 4056 200 69 10 chr4 68380625 68381682 -133946665 - L1MC2 LINE L1 -28 6316 5199 6509 195 32 15 chr4 68382354 68384308 -133944039 - Ricksha_c DNA DNA -13 2033 9 2349 85 0 0 chr4 68384418 68384713 -133943634 - AluSg SINE Alu -15 295 1 237 33 0 0 chr4 68384776 68384806 -133943541 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 198 387 22 50 chr4 68385081 68385262 -133943085 + MIR3 SINE MIR 5 180 -28 21 0 0 0 chr4 68386194 68386215 -133942132 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr4 68386354 68386388 -133941959 + AT_rich Low_complexity Low_complexity 1 34 0 272 260 225 30 chr4 68386620 68386789 -133941558 - MIR SINE MIR 0 262 61 1896 120 18 0 chr4 68386999 68387273 -133941074 + AluSc SINE Alu 21 299 -10 324 48 0 0 chr4 68387381 68387423 -133940924 + (TG)n Simple_repeat Simple_repeat 1 42 0 199 278 22 67 chr4 68387812 68387902 -133940445 + L2 LINE L2 3183 3268 -4 813 301 164 2 chr4 68388203 68388671 -133939676 + L1MC4 LINE L1 7086 7629 -413 22 0 0 0 chr4 68388673 68388695 -133939652 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 68388790 68388812 -133939535 + AT_rich Low_complexity Low_complexity 1 22 0 371 348 109 22 chr4 68389995 68390271 -133938076 + L2 LINE L2 1326 1625 -1689 305 300 124 29 chr4 68390306 68390558 -133937789 + L2 LINE L2 2753 3031 -282 630 240 32 84 chr4 68390713 68390963 -133937384 + L2 LINE L2 3077 3313 0 213 265 29 0 chr4 68393048 68393116 -133935231 + (TATATG)n Simple_repeat Simple_repeat 1 70 0 485 340 58 30 chr4 68393603 68394032 -133934315 - L1MC/D LINE L1 -2073 5735 5295 324 355 62 30 chr4 68394244 68394683 -133933664 - L1MC/D LINE L1 -1079 5067 4615 28 0 0 0 chr4 68394721 68394749 -133933598 + AT_rich Low_complexity Low_complexity 1 28 0 1550 200 11 11 chr4 68394977 68395262 -133933085 - AluJb SINE Alu -21 291 7 351 0 0 0 chr4 68395309 68395348 -133932999 + (TA)n Simple_repeat Simple_repeat 1 39 0 2044 133 128 18 chr4 68395684 68396068 -133932279 + MSTA LTR MaLR 1 426 -2 8132 195 35 11 chr4 68396071 68397681 -133930666 + MSTA-int LTR MaLR 2 1651 0 1889 196 83 8 chr4 68397681 68398079 -133930268 + MSTA LTR MaLR 1 428 0 445 323 101 18 chr4 68400228 68400445 -133927902 - L2 LINE L2 -529 2785 2551 23 0 0 0 chr4 68401507 68401530 -133926817 + AT_rich Low_complexity Low_complexity 1 23 0 2130 51 47 11 chr4 68401530 68401804 -133926543 + AluY SINE Alu 1 284 -27 2050 127 0 3 chr4 68402091 68402391 -133925956 + AluSg SINE Alu 1 299 -11 2073 153 0 3 chr4 68402485 68402798 -133925549 - AluSx SINE Alu 0 312 1 261 253 74 58 chr4 68402826 68403016 -133925331 - L1M4c LINE L1 -4892 1492 1300 2185 125 0 7 chr4 68403116 68403419 -133924928 - AluSq SINE Alu -12 301 1 706 336 93 37 chr4 68403698 68404451 -133923896 - L2 LINE L2 -66 3247 2459 1470 156 34 15 chr4 68405390 68405711 -133922636 + MER83 LTR ERV1 81 448 0 225 132 0 0 chr4 68406112 68406150 -133922197 + (CAAG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr4 68406515 68406538 -133921809 + AT_rich Low_complexity Low_complexity 1 23 0 189 302 0 0 chr4 68406728 68406771 -133921576 + L2 LINE L2 3251 3293 -20 5473 75 16 9 chr4 68407055 68407816 -133920531 - MER4E LTR ERV1 0 766 1 2226 105 7 0 chr4 68409153 68409457 -133918890 + AluY SINE Alu 1 306 -5 4075 183 23 36 chr4 68412352 68413174 -133915173 - MER4E-int LTR ERV1 -5947 811 1 5231 94 19 4 chr4 68413174 68413929 -133914418 - MER4E LTR ERV1 0 766 1 240 35 0 0 chr4 68414000 68414029 -133914318 + (A)n Simple_repeat Simple_repeat 1 29 0 1377 240 109 76 chr4 68414261 68414783 -133913564 + MER50 LTR ERV1 17 569 -165 1708 176 52 19 chr4 68414783 68415146 -133913201 - THE1C LTR MaLR 0 375 1 1377 240 109 76 chr4 68415146 68415318 -133913029 + MER50 LTR ERV1 569 734 0 2000 113 10 7 chr4 68415819 68416110 -133912237 + AluSc SINE Alu 1 292 -17 21 0 0 0 chr4 68416543 68416564 -133911783 + AT_rich Low_complexity Low_complexity 1 21 0 2073 136 0 0 chr4 68416759 68417069 -133911278 - AluSx SINE Alu 0 311 2 26 0 0 0 chr4 68417112 68417138 -133911209 + AT_rich Low_complexity Low_complexity 1 26 0 1907 136 33 3 chr4 68417470 68417802 -133910545 + MER6 DNA MER2_type 524 865 0 352 320 107 41 chr4 68418624 68418868 -133909479 + L2 LINE L2 216 475 -2839 1257 322 90 54 chr4 68418882 68419792 -133908555 + L2 LINE L2 622 1570 -1744 2126 178 28 39 chr4 68419792 68420225 -133908122 - MSTA LTR MaLR 0 428 1 1257 322 90 54 chr4 68420225 68420276 -133908071 + L2 LINE L2 1570 1618 -1696 2281 151 5 3 chr4 68420289 68420659 -133907688 - THE1C LTR MaLR -4 371 1 8925 149 53 4 chr4 68420659 68422125 -133906222 - THE1C-int LTR MaLR 0 1580 43 23 0 0 0 chr4 68423144 68423167 -133905180 + AT_rich Low_complexity Low_complexity 1 23 0 187 312 54 54 chr4 68423297 68423390 -133904957 - MIR SINE MIR -4 258 166 26 30 0 0 chr4 68424403 68424436 -133903911 + AT_rich Low_complexity Low_complexity 1 33 0 262 200 6 0 chr4 68424560 68424618 -133903729 - Alu SINE Alu -10 292 245 513 98 24 0 chr4 68425394 68425476 -133902871 - L1M1 LINE L1 -4935 2630 2547 2179 41 44 4 chr4 68425476 68425747 -133902600 - AluY SINE Alu -2 309 28 2214 142 16 3 chr4 68425800 68426166 -133902181 - THE1C LTR MaLR -4 371 1 1154 309 84 49 chr4 68426302 68426956 -133901391 + L2 LINE L2 1749 2425 -889 633 367 93 13 chr4 68427014 68427582 -133900765 + L2 LINE L2 2702 3313 0 6767 227 55 23 chr4 68428270 68429882 -133898465 + MER52A LTR ERV1 17 1755 0 25 31 0 0 chr4 68431346 68431378 -133896969 + AT_rich Low_complexity Low_complexity 1 32 0 207 0 0 0 chr4 68431438 68431461 -133896886 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5770 132 12 32 chr4 68431468 68432875 -133895472 - L1PA11 LINE L1 -8 6166 4765 4712 184 6 7 chr4 68432875 68433638 -133894709 + L1P LINE L1 3849 4612 -1534 1541 45 27 76 chr4 68433638 68433861 -133894486 - AluY SINE Alu -14 297 86 4712 184 6 7 chr4 68433861 68434003 -133894344 + L1P LINE L1 4612 4753 -1393 1881 152 3 3 chr4 68434184 68434487 -133893860 + AluSx SINE Alu 1 303 -9 201 74 0 0 chr4 68436695 68436722 -133891625 + (A)n Simple_repeat Simple_repeat 1 27 0 237 65 0 0 chr4 68437610 68437641 -133890706 + (CA)n Simple_repeat Simple_repeat 1 31 0 28 0 0 0 chr4 68438870 68438898 -133889449 + AT_rich Low_complexity Low_complexity 1 28 0 24 85 0 0 chr4 68440405 68440464 -133887883 + AT_rich Low_complexity Low_complexity 1 59 0 24 96 0 0 chr4 68441215 68441288 -133887059 + AT_rich Low_complexity Low_complexity 1 73 0 635 314 57 90 chr4 68441338 68442038 -133886309 + L1ME3A LINE L1 2156 2832 -3314 1092 130 0 0 chr4 68442085 68442290 -133886057 + AluY SINE Alu 127 311 0 403 346 126 25 chr4 68442298 68443020 -133885327 + L1ME3A LINE L1 4483 5277 -869 548 347 52 31 chr4 68443048 68443570 -133884777 + L1ME3A LINE L1 5352 5884 -286 23 0 0 0 chr4 68443973 68443996 -133884351 + AT_rich Low_complexity Low_complexity 1 23 0 471 337 35 0 chr4 68444043 68444212 -133884135 + MIR SINE MIR 75 249 -13 29 0 0 0 chr4 68444243 68444272 -133884075 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr4 68445027 68445052 -133883295 + AT_rich Low_complexity Low_complexity 1 25 0 683 78 20 0 chr4 68445265 68445367 -133882980 - L1M1 LINE L1 -4935 2630 2527 30 117 0 0 chr4 68445525 68445688 -133882659 + AT_rich Low_complexity Low_complexity 1 163 0 23 0 0 0 chr4 68446863 68446886 -133881461 + AT_rich Low_complexity Low_complexity 1 23 0 190 312 54 54 chr4 68447017 68447110 -133881237 - MIR SINE MIR -4 258 166 26 30 0 0 chr4 68448123 68448156 -133880191 + AT_rich Low_complexity Low_complexity 1 33 0 261 200 6 0 chr4 68448280 68448338 -133880009 - Alu SINE Alu -10 292 245 512 130 20 20 chr4 68449114 68449196 -133879151 - L1M1 LINE L1 -4935 2630 2546 2121 96 0 7 chr4 68449196 68449499 -133878848 - AluY SINE Alu 0 311 11 512 130 20 20 chr4 68449499 68449516 -133878831 - L1M1 LINE L1 -5018 2547 2531 276 270 20 10 chr4 68449557 68449657 -133878690 + (CCCCG)n Simple_repeat Simple_repeat 1 101 0 1843 59 25 0 chr4 68449835 68450072 -133878275 + AluY SINE Alu 52 294 -17 12641 185 30 25 chr4 68450072 68452478 -133875869 - L1M1 LINE L1 -5039 2526 106 192 40 0 0 chr4 68452478 68452503 -133875844 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 12641 185 30 25 chr4 68452503 68452594 -133875753 - L1M1 LINE L1 -7459 106 17 2276 223 83 31 chr4 68452634 68453321 -133875026 + MER50 LTR ERV1 12 734 0 27 73 0 0 chr4 68454143 68454198 -133874149 + AT_rich Low_complexity Low_complexity 1 55 0 1523 233 116 30 chr4 68454278 68454711 -133873636 - MLT2F LTR ERVL -8 655 186 2168 86 13 13 chr4 68455413 68455716 -133872631 + AluY SINE Alu 2 304 -7 24 0 0 0 chr4 68455719 68455743 -133872604 + AT_rich Low_complexity Low_complexity 1 24 0 21 71 0 0 chr4 68456368 68456410 -133871937 + AT_rich Low_complexity Low_complexity 1 42 0 37 97 0 0 chr4 68456503 68456617 -133871730 + AT_rich Low_complexity Low_complexity 1 114 0 290 310 225 43 chr4 68456724 68456911 -133871436 - MIR SINE MIR -2 260 40 28 86 0 0 chr4 68456929 68456999 -133871348 + AT_rich Low_complexity Low_complexity 1 70 0 202 325 65 0 chr4 68457030 68457107 -133871240 + L2 LINE L2 3171 3252 -20 1474 225 55 30 chr4 68457602 68458006 -133870341 - MLT2D LTR ERVL 0 414 1 23 54 0 0 chr4 68458014 68458051 -133870296 + AT_rich Low_complexity Low_complexity 1 37 0 236 146 0 21 chr4 68458088 68458136 -133870211 + (TA)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr4 68459100 68459121 -133869226 + AT_rich Low_complexity Low_complexity 1 21 0 212 250 12 0 chr4 68459502 68459582 -133868765 + (TATG)n Simple_repeat Simple_repeat 3 83 0 274 379 35 9 chr4 68460096 68460328 -133868019 - LTR33 LTR ERVL -2 519 282 358 368 52 5 chr4 68461238 68461431 -133866916 - LTR16A LTR ERVL -248 202 1 822 220 108 14 chr4 68462877 68463100 -133865247 + MSTA LTR MaLR 185 428 0 455 243 121 48 chr4 68465326 68465667 -133862680 - L1ME1 LINE L1 -187 6048 5811 * 2730 279 84 17 chr4 68465665 68467606 -133860741 - L1ME1 LINE L1 -2224 3991 1947 393 251 43 99 chr4 68467690 68467993 -133860354 - L1ME1 LINE L1 -5106 1290 1005 647 277 90 34 chr4 68468035 68468435 -133859912 - MER57A LTR ERV1 -3 400 1 324 158 39 47 chr4 68468436 68468563 -133859784 + (TTAAA)n Simple_repeat Simple_repeat 4 129 0 1278 250 81 9 chr4 68468570 68468990 -133859357 - L1ME1 LINE L1 -5455 941 492 29 84 0 0 chr4 68469114 68469185 -133859162 + AT_rich Low_complexity Low_complexity 1 71 0 423 225 40 6 chr4 68470587 68470744 -133857603 + (TA)n Simple_repeat Simple_repeat 2 167 -13 2141 123 0 0 chr4 68470744 68471037 -133857310 - AluSc SINE Alu -16 293 1 423 225 40 6 chr4 68471037 68471052 -133857295 + (TA)n Simple_repeat Simple_repeat 167 180 0 415 301 52 13 chr4 68472038 68472191 -133856156 - MER46C DNA MER2_type -101 237 79 880 223 29 98 chr4 68472634 68473020 -133855327 + LTR37B LTR ERV1 100 458 -10 246 32 0 0 chr4 68473293 68473324 -133855023 + (TG)n Simple_repeat Simple_repeat 1 31 0 1553 126 7 39 chr4 68473324 68473609 -133854738 - AluSq SINE Alu -33 280 5 1683 140 18 0 chr4 68473643 68473928 -133854419 + AluSx SINE Alu 3 292 -20 263 311 33 0 chr4 68474142 68474232 -133854115 - MIR SINE MIR -73 189 97 201 243 40 0 chr4 68474810 68474884 -133853463 + (TA)n Simple_repeat Simple_repeat 2 78 0 22 35 0 0 chr4 68475006 68475035 -133853312 + AT_rich Low_complexity Low_complexity 1 29 0 232 221 139 23 chr4 68475285 68475371 -133852976 + MIR SINE MIR 122 217 -45 281 377 59 25 chr4 68476077 68476313 -133852034 + MIR SINE MIR 2 245 -17 486 325 5 21 chr4 68476754 68476942 -133851405 - MIR SINE MIR -28 234 50 1280 175 28 2 chr4 68477207 68477622 -133850725 - MER101 LTR ERV1 0 474 1 26 50 0 0 chr4 68478877 68478917 -133849430 + AT_rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr4 68479854 68479884 -133848463 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 68480081 68480102 -133848245 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 68480452 68480473 -133847874 + AT_rich Low_complexity Low_complexity 1 21 0 2000 119 0 14 chr4 68481137 68481431 -133846916 + AluSc SINE Alu 1 290 -19 27 62 0 0 chr4 68481729 68481777 -133846570 + AT_rich Low_complexity Low_complexity 1 48 0 264 59 0 0 chr4 68482419 68482453 -133845894 + (ATG)n Simple_repeat Simple_repeat 1 34 0 641 189 15 23 chr4 68482951 68483083 -133845264 + FLAM_C SINE Alu 3 133 0 325 217 57 132 chr4 68483675 68483887 -133844460 - L2 LINE L2 0 3313 3118 420 360 36 0 chr4 68484426 68484565 -133843782 + L2 LINE L2 3127 3270 -2 827 286 152 68 chr4 68484586 68485178 -133843169 + L2 LINE L2 1115 1756 -1558 187 300 62 50 chr4 68485165 68485245 -133843102 + L3 LINE CR1 364 444 -1133 * 409 256 139 23 chr4 68485263 68485478 -133842869 + Charlie4 DNA MER1_type 56 295 -1666 1160 305 161 13 chr4 68485500 68486185 -133842162 + L2 LINE L2 1763 2548 -766 4246 144 35 55 chr4 68486222 68487112 -133841235 + MER4D LTR ERV1 1 872 0 26 50 0 0 chr4 68487112 68487152 -133841195 + AT_rich Low_complexity Low_complexity 1 40 0 37 23 0 0 chr4 68487751 68487795 -133840552 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr4 68487960 68487989 -133840358 + AT_rich Low_complexity Low_complexity 1 29 0 3901 143 8 2 chr4 68489202 68489833 -133838514 + MER41B LTR ERV1 1 635 0 4773 165 23 13 chr4 68489853 68490927 -133837420 - L1PA15 LINE L1 -56 6109 5029 3330 223 49 20 chr4 68490939 68491840 -133836507 - L1PA15 LINE L1 -1251 4895 3969 521 341 42 42 chr4 68491920 68492181 -133836166 - MIR SINE MIR 0 262 2 783 80 0 0 chr4 68492316 68492429 -133835918 - MLT2A2 LTR ERVL -340 113 1 1329 202 91 23 chr4 68492436 68492787 -133835560 + LTR49 LTR ERV1 198 572 -23 380 327 60 72 chr4 68492971 68493552 -133834795 + L1MA6 LINE L1 259 832 -4496 * 11861 199 29 51 chr4 68493535 68496651 -133831696 + L1MA6 LINE L1 2353 5358 -1124 2226 116 3 0 chr4 68496651 68496953 -133831394 - AluSc SINE Alu 0 309 7 11861 199 29 51 chr4 68496953 68498042 -133830305 + L1MA6 LINE L1 5358 6470 -12 339 240 134 13 chr4 68498102 68498255 -133830092 - MIR SINE MIR -50 212 43 244 367 48 24 chr4 68499180 68499390 -133828957 + MIR SINE MIR 2 216 -46 26 50 0 0 chr4 68501322 68501362 -133826985 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 68501906 68501927 -133826420 + AT_rich Low_complexity Low_complexity 1 21 0 1320 159 9 4 chr4 68501927 68502154 -133826193 + AluSx SINE Alu 2 229 -83 478 373 81 34 chr4 68502194 68502690 -133825657 + L2 LINE L2 2452 2970 -344 245 342 0 0 chr4 68502886 68502965 -133825382 + L2 LINE L2 3194 3272 0 3480 250 11 2 chr4 68503091 68503988 -133824359 + L1MB7 LINE L1 5271 6175 -9 22 35 0 0 chr4 68503996 68504025 -133824322 + AT_rich Low_complexity Low_complexity 1 29 0 541 318 43 21 chr4 68504596 68504829 -133823518 - MIR SINE MIR -4 258 21 2104 118 0 37 chr4 68505484 68505807 -133822540 + AluSq SINE Alu 3 313 0 33 0 0 0 chr4 68505813 68505846 -133822501 + AT_rich Low_complexity Low_complexity 1 33 0 2205 199 100 4 chr4 68506269 68506917 -133821430 - L1MC1 LINE L1 0 6751 6029 3147 258 75 25 chr4 68506930 68508138 -133820209 - L1MC1 LINE L1 -1083 5481 4213 1748 221 24 21 chr4 68508145 68508526 -133819821 + L1MA3 LINE L1 16 397 -7168 5364 169 36 14 chr4 68508530 68509177 -133819170 + L1MA3 LINE L1 5904 6535 -1189 1888 148 0 10 chr4 68509177 68509480 -133818867 - AluSx SINE Alu -12 300 1 5364 169 36 14 chr4 68509480 68510612 -133817735 + L1MA3 LINE L1 6535 7724 0 2126 271 23 10 chr4 68510611 68511381 -133816966 - L1MC1 LINE L1 -2339 4225 3446 * 1946 155 19 0 chr4 68511426 68511787 -133816560 - L1MB4 LINE L1 0 6180 5813 7227 44 0 30 chr4 68512002 68513121 -133815226 - L1PA5 LINE L1 0 6154 5045 5605 213 80 36 chr4 68513121 68515535 -133812812 - L1MC1 LINE L1 -3108 3456 946 1576 205 26 52 chr4 68515673 68516059 -133812288 - L1MC1 LINE L1 -5409 1155 780 846 192 158 54 chr4 68517103 68517363 -133810984 - AluJo SINE Alu -12 300 14 23 33 0 0 chr4 68518035 68518065 -133810282 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr4 68518171 68518202 -133810145 + AT_rich Low_complexity Low_complexity 1 31 0 247 359 10 10 chr4 68518811 68518914 -133809433 + MLT1J2 LTR MaLR 117 219 -231 194 154 0 0 chr4 68519844 68519870 -133808477 + T-rich Low_complexity Low_complexity 1 26 0 328 87 0 0 chr4 68519870 68519916 -133808431 + (G)n Simple_repeat Simple_repeat 1 46 0 1498 93 0 0 chr4 68520105 68520581 -133807766 + (G)n Simple_repeat Simple_repeat 1 476 0 300 368 112 46 chr4 68520582 68520867 -133807480 + L1M2 LINE L1 661 964 -5885 21 0 0 0 chr4 68521902 68521923 -133806424 + AT_rich Low_complexity Low_complexity 1 21 0 294 296 54 31 chr4 68522494 68522788 -133805559 - L1M4 LINE L1 -757 5389 5089 304 298 42 63 chr4 68522833 68523024 -133805323 - L1M4 LINE L1 -1171 4975 4789 332 260 72 5 chr4 68523185 68523369 -133804978 - L1M4 LINE L1 -2325 3821 3627 599 268 17 11 chr4 68523733 68523912 -133804435 - L1MCa LINE L1 -5605 821 642 1786 152 64 25 chr4 68524897 68525258 -133803089 + THE1C LTR MaLR 1 375 0 24 32 0 0 chr4 68526086 68526117 -133802230 + AT_rich Low_complexity Low_complexity 1 31 0 37 39 0 0 chr4 68526172 68526223 -133802124 + AT_rich Low_complexity Low_complexity 1 51 0 2613 271 68 12 chr4 68526264 68527287 -133801060 + L1MC4 LINE L1 6811 7891 -151 278 238 20 40 chr4 68527362 68527463 -133800884 + L1MC4 LINE L1 7918 8016 -26 36 40 0 0 chr4 68527474 68527524 -133800823 + AT_rich Low_complexity Low_complexity 1 50 0 237 178 0 0 chr4 68528981 68529026 -133799321 + CT-rich Low_complexity Low_complexity 4 48 0 279 253 42 21 chr4 68529774 68529869 -133798478 - L1MC4 LINE L1 -1327 6715 6619 2156 132 48 22 chr4 68530568 68530923 -133797424 + THE1B LTR MaLR 1 364 0 764 54 0 0 chr4 68531274 68531366 -133796981 + L1PA10 LINE L1 6061 6152 -16 2361 65 10 3 chr4 68532394 68532703 -133795644 - AluY SINE Alu 0 311 1 735 319 95 10 chr4 68533083 68533460 -133794887 - L2 LINE L2 -183 3130 2722 1631 89 20 12 chr4 68533754 68534059 -133794288 - AluSc SINE Alu 0 338 32 818 300 15 30 chr4 68534421 68534684 -133793663 + MIR SINE MIR 4 262 0 2167 102 7 0 chr4 68536310 68536595 -133791752 - AluSp SINE Alu -26 287 1 464 298 161 68 chr4 68537555 68537921 -133790426 + L2 LINE L2 2846 3245 -68 25 75 0 0 chr4 68537977 68538030 -133790317 + AT_rich Low_complexity Low_complexity 1 53 0 1559 156 3 103 chr4 68538097 68538436 -133789911 + AluJo SINE Alu 1 305 -7 25 0 0 0 chr4 68539109 68539134 -133789213 + AT_rich Low_complexity Low_complexity 1 25 0 776 203 103 103 chr4 68540107 68540476 -133787871 - L1M4 LINE L1 -1186 4960 4592 2360 65 10 0 chr4 68541877 68542171 -133786176 - AluY SINE Alu -14 297 1 2611 127 93 8 chr4 68542685 68543156 -133785191 + MER9 LTR ERVK 1 511 0 37107 103 4 6 chr4 68543156 68548349 -133779998 + HERVK9 LTR ERVK 1 5186 -730 560 301 9 14 chr4 68548323 68548539 -133779808 + HERVK9 LTR ERVK 5975 6189 -1764 * 3279 115 2 0 chr4 68548552 68549003 -133779344 + HERVK9 LTR ERVK 5183 5634 -282 1858 138 5 7 chr4 68549079 68549371 -133778976 + HERVK9 LTR ERVK 5633 5900 -16 2546 118 100 7 chr4 68549373 68549823 -133778524 + MER9 LTR ERVK 20 511 0 899 291 107 73 chr4 68550564 68551127 -133777220 - MLT1G1 LTR MaLR -13 582 1 22 35 0 0 chr4 68551367 68551396 -133776951 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 68551922 68551945 -133776402 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr4 68552031 68552053 -133776294 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 762 282 65 73 chr4 68552159 68552623 -133775724 - LTR16B LTR ERVL -4 460 1 2277 166 28 21 chr4 68552698 68553121 -133775226 + MSTB LTR MaLR 1 426 0 1113 244 154 71 chr4 68553955 68554727 -133773620 - L1ME2 LINE L1 -9 6155 5320 835 263 103 20 chr4 68554775 68555232 -133773115 + L1M4 LINE L1 4336 4830 -1316 188 372 43 16 chr4 68555708 68555896 -133772451 - MIR SINE MIR 0 262 70 34 42 0 0 chr4 68557532 68557580 -133770767 + AT_rich Low_complexity Low_complexity 1 48 0 428 235 140 18 chr4 68558331 68558616 -133769731 + L1MEc LINE L1 1914 2233 -4163 623 277 62 13 chr4 68558628 68559157 -133769190 - MLT1E3 LTR MaLR -8 616 1 356 244 101 25 chr4 68559464 68559582 -133768765 + LTR40a LTR ERVL 67 193 -326 2031 91 114 8 chr4 68559582 68559945 -133768402 + LTR7 LTR ERV1 1 450 0 578 299 4 79 chr4 68559945 68560300 -133768047 + LTR40a LTR ERVL 132 519 0 1071 121 75 67 chr4 68560316 68560344 -133768003 + L1MA8 LINE L1 6046 6072 -219 1870 117 3 42 chr4 68560344 68560652 -133767695 + AluSx SINE Alu 1 296 -16 1071 121 75 67 chr4 68560652 68560862 -133767485 + L1MA8 LINE L1 6072 6286 -5 634 239 63 0 chr4 68560885 68561107 -133767240 + L1M4 LINE L1 4980 5215 -931 739 299 44 70 chr4 68561135 68561154 -133767193 + L2 LINE L2 2675 2693 -620 2030 119 10 10 chr4 68561154 68561457 -133766890 - AluSx SINE Alu -9 303 1 739 299 44 70 chr4 68561457 68562088 -133766259 + L2 LINE L2 2693 3313 0 1523 211 20 76 chr4 68562445 68562508 -133765839 - L1MD3 LINE L1 -57 7938 7873 1466 171 42 79 chr4 68562508 68562887 -133765460 - MLT1A1 LTR MaLR 0 365 1 1523 211 20 76 chr4 68562887 68563283 -133765064 - L1MD3 LINE L1 -122 7873 7505 1991 241 11 9 chr4 68563313 68563765 -133764582 + MER74C LTR ERVL 8 460 0 1250 244 39 18 chr4 68563765 68564147 -133764200 - L1MC3 LINE L1 -484 7301 6912 698 271 11 6 chr4 68564147 68564328 -133764019 + MER76 LTR ERV 1 182 -506 392 119 17 0 chr4 68564351 68564410 -133763937 - MER76 LTR ERV -566 122 63 24 0 0 0 chr4 68565060 68565084 -133763263 + AT_rich Low_complexity Low_complexity 1 24 0 306 349 114 20 chr4 68565906 68566055 -133762292 + MIR SINE MIR 68 230 -32 32 57 0 0 chr4 68566872 68566925 -133761422 + AT_rich Low_complexity Low_complexity 1 53 0 497 42 67 17 chr4 68566977 68567097 -133761250 + (TA)n Simple_repeat Simple_repeat 1 126 0 1459 156 48 54 chr4 68568092 68568406 -133759941 + L1PA16 LINE L1 5338 5649 -517 2754 165 39 2 chr4 68568485 68568976 -133759371 + L1PA16 LINE L1 5649 6157 -9 737 340 17 7 chr4 68568990 68569284 -133759063 - ERVL LTR ERVL -649 5115 4819 902 230 44 5 chr4 68569343 68569547 -133758800 + MSTA LTR MaLR 217 428 0 2864 175 8 0 chr4 68569547 68570055 -133758292 + MSTA-int LTR MaLR 1 512 -1139 1886 158 3 10 chr4 68570055 68570353 -133757994 + AluSx SINE Alu 1 296 -16 562 245 0 0 chr4 68570395 68570501 -133757846 + MSTA-int LTR MaLR 731 836 -815 3852 180 17 31 chr4 68570515 68571276 -133757071 - MST-int LTR MaLR -50 1601 852 378 102 0 0 chr4 68571276 68571325 -133757022 + MSTB LTR MaLR 378 426 0 644 225 53 69 chr4 68571326 68571594 -133756753 - ERVL LTR ERVL -1042 4485 4179 294 317 137 25 chr4 68571952 68572113 -133756234 - MIR SINE MIR 0 262 84 198 388 95 0 chr4 68572263 68572379 -133755968 - L2 LINE L2 -1153 2161 2035 3299 250 55 39 chr4 68573012 68574108 -133754239 - L1MC3 LINE L1 -605 7180 6068 465 274 75 66 chr4 68574202 68574991 -133753356 + L1M4 LINE L1 2506 3301 -2845 23 54 0 0 chr4 68575988 68576025 -133752322 + AT_rich Low_complexity Low_complexity 1 37 0 2258 112 0 6 chr4 68576046 68576360 -133751987 + AluSx SINE Alu 1 312 0 183 42 0 0 chr4 68576404 68576428 -133751919 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr4 68577059 68577082 -133751265 + AT_rich Low_complexity Low_complexity 1 23 0 229 308 99 0 chr4 68577695 68577786 -133750561 + MER93b LTR ERV1 19 118 -255 2429 80 0 0 chr4 68577824 68578135 -133750212 + AluY SINE Alu 1 311 0 408 320 122 5 chr4 68578177 68578374 -133749973 + MER57A LTR ERV1 134 353 -50 978 148 35 5 chr4 68579483 68579686 -133748661 - L1MA7 LINE L1 -1 6290 6082 23 0 0 0 chr4 68580077 68580100 -133748247 + AT_rich Low_complexity Low_complexity 1 23 0 789 233 112 24 chr4 68580794 68581234 -133747113 + MLT1D LTR MaLR 1 505 0 242 197 16 16 chr4 68581261 68581322 -133747025 + (TA)n Simple_repeat Simple_repeat 1 61 0 317 225 54 36 chr4 68582545 68582656 -133745691 + L1MEc LINE L1 1106 1218 -5178 1623 135 0 15 chr4 68582660 68582927 -133745420 - MER46B DNA MER2_type 0 236 99 279 286 88 74 chr4 68582998 68583703 -133744644 + L1MEc LINE L1 1586 2300 -4096 3077 261 45 47 chr4 68584049 68584767 -133743580 - L1P LINE L1 -3222 2924 2207 233 29 29 0 chr4 68584767 68584801 -133743546 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3077 261 45 47 chr4 68584801 68585340 -133743007 - L1P LINE L1 -3939 2207 1669 2319 256 8 8 chr4 68585357 68586016 -133742331 + L1 LINE L1 4540 5198 -948 639 154 35 63 chr4 68586061 68586204 -133742143 + L1P5 LINE L1 5642 5780 -371 375 78 0 0 chr4 68586206 68586257 -133742090 + (CA)n Simple_repeat Simple_repeat 2 52 0 832 102 0 0 chr4 68586263 68586381 -133741966 - L1PB2 LINE L1 -252 5899 5782 357 275 126 53 chr4 68587046 68587293 -133741054 - L1ME2 LINE L1 -30 6134 5870 320 171 40 0 chr4 68587303 68587379 -133740968 - L1MA10 LINE L1 -8 6326 6248 1658 261 36 73 chr4 68587379 68587977 -133740370 - L1ME1 LINE L1 -143 6023 5405 189 0 0 0 chr4 68587977 68587998 -133740349 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2010 115 7 0 chr4 68588002 68588290 -133740057 - AluSq SINE Alu -23 290 1 1658 261 36 73 chr4 68588290 68588544 -133739803 - L1ME1 LINE L1 -764 5402 5210 1985 279 77 41 chr4 68588576 68589764 -133738583 - L1ME1 LINE L1 -1101 5045 3815 2493 175 4 15 chr4 68589764 68590227 -133738120 - LTR22A LTR ERVK 0 458 1 1249 152 4 0 chr4 68590227 68590487 -133737860 - HERVK22 LTR ERVK 0 6837 3333 4228 109 12 0 chr4 68590490 68591086 -133737261 - HERVK22 LTR ERVK -3907 2930 2328 * 5104 141 19 10 chr4 68591080 68591884 -133736463 - HERVK22 LTR ERVK -6026 811 1 2555 144 33 16 chr4 68591884 68592334 -133736013 - LTR22A LTR ERVK 0 458 1 941 249 51 0 chr4 68592382 68592619 -133735728 + MER82 DNA MER2_type 23 271 -382 405 0 0 0 chr4 68592619 68592664 -133735683 + (CA)n Simple_repeat Simple_repeat 2 46 0 1322 240 40 5 chr4 68592705 68593080 -133735267 - L1P LINE L1 -3585 2561 2174 * 3858 169 16 21 chr4 68593077 68593970 -133734377 + L1PA16 LINE L1 5039 5930 -236 1382 270 119 55 chr4 68594141 68594987 -133733360 - L1ME1 LINE L1 -2358 3788 2853 1686 196 25 41 chr4 68594987 68595380 -133732967 + MLT1B LTR MaLR 4 390 0 1382 270 119 55 chr4 68595380 68595639 -133732708 - L1ME1 LINE L1 -3293 2853 2612 * 1734 95 0 0 chr4 68595635 68595877 -133732470 - L1P LINE L1 -1773 4373 4132 1142 246 49 19 chr4 68595896 68596327 -133732020 - L1ME1 LINE L1 -3559 2587 2144 1278 261 10 29 chr4 68596350 68596660 -133731687 - LTR69 LTR ERVL -4 584 281 1493 107 8 49 chr4 68596882 68597125 -133731222 - L1P4 LINE L1 -465 5698 5466 2185 97 3 3 chr4 68597125 68597433 -133730914 + AluSx SINE Alu 1 308 -4 1534 160 26 4 chr4 68598809 68599078 -133729269 - L1PA15 LINE L1 -7 6158 5884 1646 192 6 6 chr4 68599499 68599842 -133728505 - L1MA4 LINE L1 -9 6291 5949 1347 171 4 0 chr4 68599842 68600076 -133728271 + L1MA4 LINE L1 5709 5943 -357 406 370 105 4 chr4 68600436 68600674 -133727673 - LTR16A LTR ERVL -6 444 183 36 0 0 0 chr4 68601162 68601198 -133727149 + AT_rich Low_complexity Low_complexity 1 36 0 2026 109 74 40 chr4 68601251 68601601 -133726746 - THE1B LTR MaLR -2 362 1 38 22 0 0 chr4 68602506 68602551 -133725796 + AT_rich Low_complexity Low_complexity 1 45 0 27 0 0 0 chr4 68602745 68602772 -133725575 + AT_rich Low_complexity Low_complexity 1 27 0 180 200 0 0 chr4 68603450 68603500 -133724847 + (CA)n Simple_repeat Simple_repeat 1 50 0 878 309 36 72 chr4 68603765 68604235 -133724112 + LTR33A LTR ERVL 71 523 0 621 282 24 24 chr4 68604240 68604449 -133723898 + MER63A DNA MER1_type 2 210 0 2591 180 38 14 chr4 68605160 68605660 -133722687 + L1PB4 LINE L1 5616 6127 -29 416 268 146 81 chr4 68606798 68607167 -133721180 - MLT1H LTR MaLR -50 499 107 23 33 0 0 chr4 68607501 68607531 -133720816 + AT_rich Low_complexity Low_complexity 1 30 0 2333 59 7 10 chr4 68608278 68608584 -133719763 + AluY SINE Alu 1 305 -6 1771 167 56 22 chr4 68608751 68609111 -133719236 + THE1C LTR MaLR 3 374 -1 6566 80 35 6 chr4 68609733 68610667 -133717680 - L1PA8 LINE L1 0 6172 5229 4224 110 8 0 chr4 68610667 68611283 -133717064 + L1P LINE L1 3771 4391 -1755 233 336 136 7 chr4 68612722 68612862 -133715485 + L2 LINE L2 3115 3272 0 32 0 0 0 chr4 68613123 68613155 -133715192 + AT_rich Low_complexity Low_complexity 1 32 0 222 91 0 0 chr4 68613210 68613243 -133715104 + (TG)n Simple_repeat Simple_repeat 2 34 0 22 56 0 0 chr4 68613521 68613557 -133714790 + AT_rich Low_complexity Low_complexity 1 36 0 2370 215 25 26 chr4 68618442 68618489 -133709858 + L1MA6 LINE L1 5261 5307 -993 1419 159 19 11 chr4 68618489 68618759 -133709588 + L1PB2 LINE L1 5877 6148 -3 2370 215 25 26 chr4 68618759 68619390 -133708957 + L1MA6 LINE L1 5307 5938 -362 * 4449 164 23 2 chr4 68618780 68619609 -133708738 + L1PA16 LINE L1 5319 6164 -2 227 265 26 17 chr4 68619610 68619727 -133708620 + L1M4 LINE L1 2257 2374 -3772 243 146 0 0 chr4 68622058 68622099 -133706248 + (A)n Simple_repeat Simple_repeat 1 41 0 2219 96 0 0 chr4 68622232 68622524 -133705823 + AluY SINE Alu 3 294 -17 1994 109 10 26 chr4 68623166 68623469 -133704878 - AluSx SINE Alu -14 298 1 24 32 0 0 chr4 68623633 68623664 -133704683 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr4 68624381 68624416 -133703931 + AT_rich Low_complexity Low_complexity 1 35 0 215 278 69 0 chr4 68625129 68625201 -133703146 + MIR SINE MIR 88 164 -98 393 22 0 0 chr4 68625339 68625385 -133702962 + (TA)n Simple_repeat Simple_repeat 2 47 0 1032 266 85 34 chr4 68625921 68626297 -133702050 - L1ME3A LINE L1 -11 6159 5747 234 62 0 0 chr4 68626297 68626329 -133702018 + (TG)n Simple_repeat Simple_repeat 2 33 0 1032 266 85 34 chr4 68626329 68626481 -133701866 - L1ME3A LINE L1 -423 5747 5604 781 233 42 45 chr4 68626684 68627014 -133701333 + L1ME LINE L1 742 1070 -5000 15159 96 14 1 chr4 68627107 68629530 -133698817 - L1PA7 LINE L1 -21 6448 3976 417 39 0 0 chr4 68629530 68629581 -133698766 + (TG)n Simple_repeat Simple_repeat 2 52 0 15159 96 14 1 chr4 68629581 68630104 -133698243 - L1PA7 LINE L1 -2493 3976 3461 619 143 0 0 chr4 68630095 68630193 -133698154 - L1PA7 LINE L1 -6363 98 1 * 415 322 4 25 chr4 68631118 68631320 -133697027 + MLT1A1 LTR MaLR 1 196 -169 3941 41 2 0 chr4 68631375 68631859 -133696488 + L1PA4 LINE L1 5663 6147 -8 711 181 14 21 chr4 68631926 68632070 -133696277 + MLT1A1 LTR MaLR 219 361 -4 213 347 52 36 chr4 68632411 68632604 -133695743 - MIR3 SINE MIR -9 199 4 614 304 0 48 chr4 68633407 68633637 -133694710 + MIR SINE MIR 12 230 -32 3835 133 75 51 chr4 68635857 68637287 -133691060 - pTR5 LTR ERV1 0 2606 1524 233 253 51 108 chr4 68637430 68637527 -133690820 - L2 LINE L2 -1 3312 3226 2143 111 3 0 chr4 68637527 68637825 -133690522 + AluSx SINE Alu 1 299 -13 233 253 51 108 chr4 68637825 68637885 -133690462 - L2 LINE L2 -87 3226 3164 23 0 0 0 chr4 68638161 68638184 -133690163 + AT_rich Low_complexity Low_complexity 1 23 0 2007 141 3 0 chr4 68638658 68638964 -133689383 + AluSg SINE Alu 1 307 -3 766 273 134 13 chr4 68639516 68639585 -133688762 - L1M4 LINE L1 -2847 3299 3240 2171 128 0 3 chr4 68639585 68639891 -133688456 - AluSq SINE Alu -8 305 1 766 273 134 13 chr4 68639891 68640216 -133688131 - L1M4 LINE L1 -2906 3240 2857 1581 190 10 17 chr4 68640223 68640512 -133687835 - AluSx SINE Alu -23 289 3 813 251 39 12 chr4 68641314 68641569 -133686778 + L1ME2 LINE L1 5378 5639 -527 343 248 26 43 chr4 68641639 68641756 -133686591 + L1ME2 LINE L1 5987 6101 -63 18820 43 7 0 chr4 68641821 68644181 -133684166 + L1PA4 LINE L1 1315 3690 -2456 7875 16 0 0 chr4 68644180 68645065 -133683282 + L1PA2 LINE L1 5270 6154 -1 * 14234 39 2 1 chr4 68645120 68647598 -133680749 + L1PA4 LINE L1 3680 6155 0 1337 153 20 4 chr4 68647934 68648182 -133680165 - L1M2 LINE L1 -708 5604 5353 2271 88 10 3 chr4 68648192 68648488 -133679859 - AluY SINE Alu -13 298 1 337 261 9 18 chr4 68648494 68648605 -133679742 - L1M2 LINE L1 -844 5302 5193 5966 208 98 20 chr4 68648607 68649867 -133678480 - MER52A LTR ERV1 0 1755 397 439 211 38 21 chr4 68649864 68649969 -133678378 - MER52A LTR ERV1 -1459 296 89 * 2725 96 0 19 chr4 68649968 68650345 -133678002 - MLT2A1 LTR ERVL -74 370 1 8649 86 3 3 chr4 68650345 68651463 -133676884 - HERVL-A1 LTR ERVL 0 5654 4537 1915 139 0 0 chr4 68701463 68701751 -133626596 - Tigger1 DNA MER2_type -578 1840 1553 359 68 0 0 chr4 68701851 68701895 -133626452 - LTR17 LTR ERV1 -736 44 1 34 55 0 0 chr4 68702103 68702158 -133626189 + AT_rich Low_complexity Low_complexity 1 55 0 2249 122 55 17 chr4 68702331 68702693 -133625654 + MER51B LTR ERV1 2 377 0 2217 136 66 58 chr4 68702693 68703120 -133625227 + MER51B-int LTR ERV1 1 430 -7386 20091 45 51 3 chr4 68703224 68705786 -133622561 - L1P LINE L1 -3460 2686 1 24 0 0 0 chr4 68706818 68706842 -133621505 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chr4 68707029 68707058 -133621289 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 68707768 68707789 -133620558 + AT_rich Low_complexity Low_complexity 1 21 0 243 289 29 0 chr4 68708751 68708855 -133619492 + (TA)n Simple_repeat Simple_repeat 2 108 0 192 231 0 0 chr4 68708869 68708921 -133619426 + (TA)n Simple_repeat Simple_repeat 2 53 0 232 297 0 22 chr4 68708924 68709015 -133619332 - L1MC4 LINE L1 -1340 6702 6614 439 257 20 0 chr4 68709015 68709163 -133619184 + (CATA)n Simple_repeat Simple_repeat 4 154 0 7883 127 185 131 chr4 68709346 68710224 -133618123 + MER51-int LTR ERV1 359 1188 -6628 1806 191 93 28 chr4 68710224 68710684 -133617663 - LTR2B LTR ERV1 0 490 1 7883 127 185 131 chr4 68710684 68712318 -133616029 + MER51-int LTR ERV1 1188 3007 -4809 1797 107 52 9 chr4 68712320 68712706 -133615641 + LTR7 LTR ERV1 1 450 0 1904 97 59 0 chr4 68712706 68712994 -133615353 + MER51B-int LTR ERV1 3005 3309 -4507 1809 180 55 2 chr4 68712984 68713433 -133614914 + MER51B-int LTR ERV1 1474 3172 -2774 * 593 88 11 0 chr4 68713462 68713553 -133614794 + MER51B-int LTR ERV1 2210 2301 -2916 * 1496 101 5 5 chr4 68713550 68713767 -133614580 + MER51B-int LTR ERV1 5081 5297 -2121 30 0 0 0 chr4 68713768 68713798 -133614549 + AT_rich Low_complexity Low_complexity 1 30 0 7123 42 0 17 chr4 68713798 68714593 -133613754 - L1PA5 LINE L1 -11 6143 5373 2477 81 0 9 chr4 68714593 68714913 -133613434 + AluYb8 SINE Alu 1 317 -1 7123 42 0 17 chr4 68714913 68715576 -133612771 - L1PA5 LINE L1 -781 5373 4700 3550 42 11 0 chr4 68715576 68716024 -133612323 + L1PA5 LINE L1 4250 4702 -1444 541 133 20 10 chr4 68716024 68716122 -133612225 + MER51B-int LTR ERV1 4906 5004 -2533 396 141 109 11 chr4 68716121 68716213 -133612134 + MER51B-int LTR ERV1 5249 5349 -2188 * 7737 137 23 16 chr4 68716203 68717673 -133610674 + MER51B-int LTR ERV1 5620 7147 -390 667 199 22 0 chr4 68717673 68717809 -133610538 + LTR54B LTR ERV1 3 141 -357 2368 120 15 0 chr4 68717809 68718150 -133610197 + MER51B-int LTR ERV1 7470 7815 -1 2066 137 74 0 chr4 68718152 68718503 -133609844 + MER51B LTR ERV1 1 377 0 25 31 0 0 chr4 68719089 68719121 -133609226 + AT_rich Low_complexity Low_complexity 1 32 0 954 120 42 12 chr4 68720410 68720576 -133607771 - LTR23 LTR ERV1 0 437 267 3142 56 4 108 chr4 68720576 68721076 -133607271 + LTR7 LTR ERV1 1 448 -2 1245 153 65 23 chr4 68721077 68721338 -133607009 - LTR23 LTR ERV1 -165 272 1 408 265 12 29 chr4 68721340 68721510 -133606837 + (TA)n Simple_repeat Simple_repeat 2 168 0 395 283 121 63 chr4 68722213 68722963 -133605384 - L1MDa LINE L1 -4360 1720 927 11094 31 1 0 chr4 68723128 68725219 -133603128 + L1PA3 LINE L1 4060 6152 -3 26 0 0 0 chr4 68725220 68725246 -133603101 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr4 68725267 68725290 -133603057 + (A)n Simple_repeat Simple_repeat 1 23 0 595 335 86 32 chr4 68725306 68725873 -133602474 - L1MDa LINE L1 -5326 744 147 2509 234 30 19 chr4 68725913 68726538 -133601809 - MER39 LTR ERV1 0 707 76 1174 144 54 0 chr4 68726540 68726762 -133601585 - L1PA13 LINE L1 0 6814 6581 13009 189 22 22 chr4 68726762 68730132 -133598215 - L1PA13 LINE L1 -482 6330 2963 10210 200 18 6 chr4 68730113 68730396 -133597951 - L1PA13 LINE L1 -4892 1895 1617 * 222 37 0 0 chr4 68730396 68730423 -133597924 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 10210 200 18 6 chr4 68730423 68732012 -133596335 - L1PA13 LINE L1 -5170 1617 1 332 247 56 0 chr4 68732211 68732300 -133596047 - MER21B LTR ERV1 -517 346 253 514 171 0 0 chr4 68732310 68732392 -133595955 - MER39 LTR ERV1 -625 82 1 3855 256 153 28 chr4 68733280 68733315 -133595032 + L1MDa LINE L1 19 48 -6492 2826 217 33 3 chr4 68733315 68733919 -133594428 - LTR26E LTR ERV1 0 622 1 3855 256 153 28 chr4 68733919 68735370 -133592977 + L1MDa LINE L1 48 1691 -4849 414 178 22 33 chr4 68735362 68735452 -133592895 - L1MDa LINE L1 -4665 1875 1787 * 1115 258 105 0 chr4 68735447 68735819 -133592528 - L1MD1 LINE L1 -226 6016 5606 552 225 0 0 chr4 68735951 68736080 -133592267 + (TA)n Simple_repeat Simple_repeat 1 129 0 277 273 171 34 chr4 68736824 68737000 -133591347 - L2 LINE L2 -4 3309 3110 3236 47 5 7 chr4 68738377 68738786 -133589561 - L1PA7 LINE L1 0 6154 5747 291 330 59 0 chr4 68738834 68738952 -133589395 - MIR SINE MIR -56 206 82 495 49 0 0 chr4 68739325 68739386 -133588961 - L1MC3 LINE L1 -500 7285 7225 2333 81 0 3 chr4 68739501 68739798 -133588549 - AluY SINE Alu -13 298 3 324 273 13 78 chr4 68739822 68739976 -133588371 + MER103 DNA DNA 16 159 -7 192 216 0 0 chr4 68740025 68740062 -133588285 - MIR3 SINE MIR -50 158 122 2208 121 0 3 chr4 68740087 68740392 -133587955 + AluSq SINE Alu 1 304 -9 215 182 23 0 chr4 68740815 68740859 -133587488 + A-rich Low_complexity Low_complexity 2 46 0 21 57 0 0 chr4 68741299 68741334 -133587013 + AT_rich Low_complexity Low_complexity 1 35 0 246 248 124 58 chr4 68741722 68741843 -133586504 + MIR SINE MIR 28 156 -106 377 167 128 0 chr4 68742548 68742626 -133585721 - MER5C DNA MER1_type -3 321 234 9457 148 23 28 chr4 68742919 68744645 -133583702 - Tigger1 DNA MER2_type -1 2417 700 1664 169 8 78 chr4 68744643 68745015 -133583332 - Tigger1 DNA MER2_type -2047 371 26 * 278 310 23 0 chr4 68746237 68746324 -133582023 + T-rich Low_complexity Low_complexity 4 92 0 270 237 175 9 chr4 68746382 68746496 -133581851 + L1ME3A LINE L1 6011 6143 -27 1651 175 49 110 chr4 68746736 68747181 -133581166 + MSTB LTR MaLR 9 426 0 7911 198 31 18 chr4 68747181 68748812 -133579535 + MSTB-int LTR MaLR 1 1651 0 385 109 0 0 chr4 68748812 68748867 -133579480 + MSTB LTR MaLR 1 55 -371 2022 203 57 3 chr4 68748868 68749253 -133579094 + MSTB LTR MaLR 19 424 -2 1218 250 87 41 chr4 68750307 68751182 -133577165 - L1ME1 LINE L1 -253 5982 5087 459 0 0 0 chr4 68751275 68751326 -133577021 + (CATTA)n Simple_repeat Simple_repeat 3 53 0 768 213 51 72 chr4 68751353 68751524 -133576823 - MLT1E LTR MaLR -8 585 419 1494 184 36 0 chr4 68751524 68751802 -133576545 + AluJo SINE Alu 9 296 -16 768 213 51 72 chr4 68751802 68751865 -133576482 - MLT1E LTR MaLR -174 419 356 3257 149 150 63 chr4 68751912 68752679 -133575668 + MER52C LTR ERV1 445 1278 0 292 260 0 14 chr4 68752737 68752810 -133575537 - MLT1E LTR MaLR -318 275 204 235 182 109 0 chr4 68752854 68752909 -133575438 - U7 snRNA snRNA 0 63 3 413 287 9 9 chr4 68752910 68753025 -133575322 - MLT1E LTR MaLR -431 162 48 467 303 44 22 chr4 68753075 68753349 -133574998 - L1ME1 LINE L1 -1256 4959 4680 1407 286 83 40 chr4 68753578 68754785 -133573562 - L1ME1 LINE L1 -1599 4616 3358 2852 230 36 1 chr4 68754798 68755473 -133572874 - L1MB5 LINE L1 -1 6409 5712 337 258 0 11 chr4 68755508 68755597 -133572750 + MER4A LTR ERV1 1 88 -576 1064 279 96 35 chr4 68755635 68756179 -133572168 + LTR34 LTR ERV1 109 685 -14 2405 250 35 13 chr4 68756185 68756679 -133571668 - L1MB5 LINE L1 -712 5698 5176 2383 68 3 16 chr4 68756679 68756989 -133571358 - AluY SINE Alu -5 306 1 2405 250 35 13 chr4 68756989 68757359 -133570988 - L1MB5 LINE L1 -1234 5176 4815 712 244 67 20 chr4 68757359 68757716 -133570631 - L1MB5 LINE L1 -4088 2296 1923 1876 159 14 0 chr4 68757784 68758067 -133570280 - AluSx SINE Alu -20 292 6 1300 264 12 17 chr4 68758243 68758588 -133569759 + MLT1A1 LTR MaLR 11 353 -12 346 266 42 102 chr4 68758691 68759099 -133569248 - L1ME1 LINE L1 -5141 1255 875 1592 195 107 57 chr4 68759099 68759540 -133568807 + MLT1C LTR MaLR 3 465 -2 346 266 42 102 chr4 68759540 68759583 -133568764 - L1ME1 LINE L1 -5521 875 831 29 21 0 21 chr4 68759626 68759640 -133568707 + AT_rich Low_complexity Low_complexity 1 14 -32 1921 148 3 0 chr4 68759640 68759923 -133568424 - AluSx SINE Alu -28 284 1 29 21 0 21 chr4 68759923 68759955 -133568392 + AT_rich Low_complexity Low_complexity 14 46 0 1092 276 40 25 chr4 68760788 68761157 -133567190 - L1ME1 LINE L1 -5579 817 440 2134 128 46 22 chr4 68761157 68761523 -133566824 - THE1C LTR MaLR 0 375 1 1092 276 40 25 chr4 68761523 68761552 -133566795 - L1ME1 LINE L1 -5956 440 413 416 244 68 62 chr4 68761621 68761797 -133566550 - MLT1H LTR MaLR -268 281 105 832 250 36 50 chr4 68761873 68762153 -133566194 - ERVL LTR ERVL -3197 2567 2292 969 240 45 11 chr4 68762772 68763245 -133565102 - MER34 LTR ERV1 -2 540 25 316 255 6 6 chr4 68764846 68765003 -133563344 + (TA)n Simple_repeat Simple_repeat 1 157 0 619 170 0 0 chr4 68765399 68765511 -133562836 + L1 LINE L1 5164 5275 -871 22 35 0 0 chr4 68765572 68765601 -133562746 + AT_rich Low_complexity Low_complexity 1 29 0 23 78 0 0 chr4 68765746 68765797 -133562550 + AT_rich Low_complexity Low_complexity 1 51 0 1074 219 35 0 chr4 68766345 68766628 -133561719 - MER33 DNA MER1_type -27 297 5 1557 198 112 6 chr4 68766678 68767036 -133561311 - MSTD LTR MaLR 0 396 1 942 329 97 68 chr4 68767199 68768106 -133560241 - L2 LINE L2 -422 2892 1936 1963 97 0 78 chr4 68768106 68768415 -133559932 + AluY SINE Alu 1 285 -26 942 329 97 68 chr4 68768415 68768779 -133559568 - L2 LINE L2 -1378 1936 1584 10618 32 0 1 chr4 68768912 68770210 -133558137 + L1P LINE L1 2903 4199 -1947 2322 72 3 0 chr4 68770223 68770513 -133557834 - AluY SINE Alu -20 291 1 209 364 0 20 chr4 68770567 68770666 -133557681 + L2 LINE L2 2681 2777 -537 184 281 61 37 chr4 68770952 68771034 -133557313 + L2 LINE L2 3223 3306 -7 * 486 270 15 81 chr4 68771005 68771264 -133557083 - L2 LINE L2 0 3313 3072 23 0 0 0 chr4 68772134 68772157 -133556190 + AT_rich Low_complexity Low_complexity 1 23 0 2279 114 0 0 chr4 68773221 68773529 -133554818 - AluSc SINE Alu -1 308 1 997 329 136 9 chr4 68773973 68774621 -133553726 - L2 LINE L2 -176 3137 2413 243 320 70 20 chr4 68774669 68774769 -133553578 - HAL1 LINE L1 -2393 114 10 338 296 146 45 chr4 68775758 68776045 -133552302 - MLT1H LTR MaLR -5 544 229 397 143 0 0 chr4 68776185 68776241 -133552106 - MLT1B LTR MaLR 0 390 335 1838 137 3 80 chr4 68776241 68776578 -133551769 - MER1B DNA MER1_type 0 339 29 428 171 0 0 chr4 68776585 68776655 -133551692 - MLT1B LTR MaLR -46 344 275 1927 201 60 17 chr4 68776664 68777127 -133551220 + LTR38 LTR ERV1 5 487 -69 1210 211 49 4 chr4 68777170 68777435 -133550912 - MLT1B LTR MaLR -113 277 1 756 237 54 0 chr4 68777635 68777821 -133550526 - MER20 DNA MER1_type 0 219 24 22 0 0 0 chr4 68778207 68778229 -133550118 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 68778471 68778492 -133549855 + AT_rich Low_complexity Low_complexity 1 21 0 1130 235 45 34 chr4 68780046 68780198 -133548149 + MLT1A2 LTR MaLR 3 152 -222 4052 70 2 0 chr4 68780198 68780727 -133547620 + L1PA7 LINE L1 5625 6154 0 1130 235 45 34 chr4 68780727 68780927 -133547420 + MLT1A2 LTR MaLR 152 359 -15 231 268 28 28 chr4 68780967 68781038 -133547309 + MIR SINE MIR 165 235 -27 397 304 116 40 chr4 68781778 68782574 -133545773 + L1ME4a LINE L1 5405 5885 -236 1709 194 46 3 chr4 68782162 68782512 -133545835 - MLT1A1 LTR MaLR 0 365 1 310 280 104 76 chr4 68782512 68782609 -133545738 + L1MB8 LINE L1 5833 5926 -252 2304 96 0 0 chr4 68782663 68782956 -133545391 - AluSg SINE Alu -1 309 17 2132 132 50 19 chr4 68782988 68783352 -133544995 + THE1C LTR MaLR 1 375 0 183 329 85 0 chr4 68783649 68783731 -133544616 + MIR3 SINE MIR 113 201 -7 22 0 0 0 chr4 68784223 68784245 -133544102 + AT_rich Low_complexity Low_complexity 1 22 0 316 207 198 45 chr4 68784433 68784588 -133543759 - L1ME2 LINE L1 -79 6083 5902 183 204 0 0 chr4 68784650 68784699 -133543648 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 876 253 39 27 chr4 68784725 68784982 -133543365 - L1ME2 LINE L1 -441 5723 5464 1524 173 81 59 chr4 68785288 68785825 -133542522 - MER67C LTR ERV1 0 514 1 22 0 0 0 chr4 68786000 68786022 -133542325 + AT_rich Low_complexity Low_complexity 1 22 0 236 53 26 0 chr4 68786539 68786577 -133541770 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 30753 26 0 0 chr4 68786578 68791016 -133537331 - L1PA2 LINE L1 -13 6142 1705 10129 30 0 0 chr4 68791016 68793036 -133535311 + L1PA2 LINE L1 4172 6189 0 884 331 169 42 chr4 68793326 68793733 -133534614 - L2 LINE L2 -940 2374 2020 1933 114 0 72 chr4 68793733 68794066 -133534281 + AluY SINE Alu 1 309 -2 884 331 169 42 chr4 68794066 68794833 -133533514 - L2 LINE L2 -1294 2020 1051 927 267 48 68 chr4 68794992 68795389 -133532958 + MLT1B LTR MaLR 2 390 0 220 292 0 15 chr4 68795585 68795650 -133532697 - MIR SINE MIR -113 149 86 613 304 83 53 chr4 68795918 68796316 -133532031 + MER77 LTR ERV1 78 487 -118 2228 112 0 0 chr4 68796337 68796632 -133531715 - AluSg SINE Alu -15 295 1 252 292 29 95 chr4 68797029 68797166 -133531181 - L2 LINE L2 -995 2319 2192 237 316 60 0 chr4 68797273 68797390 -133530957 - MER103 DNA DNA -5 161 38 799 137 8 8 chr4 68797461 68797585 -133530762 - MLT1B LTR MaLR -61 329 206 203 152 0 0 chr4 68798385 68798418 -133529929 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 315 345 174 0 chr4 68798701 68799000 -133529347 - L2 LINE L2 0 3313 2963 2177 104 0 7 chr4 68800866 68801163 -133527184 - AluSx SINE Alu -17 295 1 248 295 0 0 chr4 68801976 68802037 -133526310 + 7SK RNA RNA 133 193 0 460 317 158 0 chr4 68802686 68802869 -133525478 - MIR SINE MIR -6 256 45 281 242 15 0 chr4 68804133 68804199 -133524148 - MER5B DNA MER1_type -110 68 2 260 260 14 0 chr4 68805256 68805329 -133523018 + (TG)n Simple_repeat Simple_repeat 2 75 0 26 74 0 0 chr4 68805810 68805864 -133522483 + AT_rich Low_complexity Low_complexity 1 54 0 2333 85 0 3 chr4 68805941 68806246 -133522101 - AluY SINE Alu -7 304 1 22 80 0 0 chr4 68806679 68806729 -133521618 + AT_rich Low_complexity Low_complexity 1 50 0 3126 250 79 35 chr4 68809036 68810166 -133518181 - MER69B DNA AcHobo -8 1218 39 794 241 186 24 chr4 68810171 68810880 -133517467 - Charlie2 DNA MER1_type -286 2576 1672 622 302 128 40 chr4 68810979 68811376 -133516971 - Charlie2 DNA MER1_type -2257 525 94 407 258 0 21 chr4 68811752 68811849 -133516498 - MER5A DNA MER1_type -80 109 15 191 200 0 33 chr4 68811873 68811933 -133516414 + (TATG)n Simple_repeat Simple_repeat 3 60 0 925 287 83 57 chr4 68812240 68812414 -133515933 - MER20B DNA MER1_type -6 777 609 360 0 0 0 chr4 68812414 68812454 -133515893 + (CA)n Simple_repeat Simple_repeat 1 40 0 925 287 83 57 chr4 68812454 68813035 -133515312 - MER20B DNA MER1_type -174 609 2 215 190 17 0 chr4 68813369 68813427 -133514920 + CT-rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr4 68814430 68814451 -133513896 + AT_rich Low_complexity Low_complexity 1 21 0 295 279 128 0 chr4 68815971 68816057 -133512290 + MER5A DNA MER1_type 10 106 -83 539 277 22 0 chr4 68816176 68816313 -133512034 - MER5A DNA MER1_type -40 149 10 1892 117 4 0 chr4 68816319 68816585 -133511762 - AluSp SINE Alu -8 305 39 2090 117 0 3 chr4 68817164 68817503 -133510844 + AluY SINE Alu 1 338 0 35340 106 11 13 chr4 68817925 68823706 -133504641 + L1PA6 LINE L1 1 5770 -384 2230 90 35 0 chr4 68823706 68823994 -133504353 + AluSp SINE Alu 1 298 -15 35340 106 11 13 chr4 68823994 68824376 -133503971 + L1PA6 LINE L1 5770 6151 -3 320 250 61 18 chr4 68824559 68824807 -133503540 - LTR37A LTR ERV1 -74 383 138 685 170 14 0 chr4 68824811 68824952 -133503395 + CT-rich Low_complexity Low_complexity 3 145 0 1961 130 16 3 chr4 68824952 68825260 -133503087 - AluSx SINE Alu 0 312 1 940 118 28 11 chr4 68826034 68826212 -133502135 - L1MA3 LINE L1 0 6305 6125 338 339 227 12 chr4 68828177 68828402 -133499945 + L3 LINE CR1 1077 1252 -325 378 0 0 0 chr4 68828402 68828444 -133499903 + (TG)n Simple_repeat Simple_repeat 2 43 0 338 339 227 12 chr4 68828444 68828548 -133499799 + L3 LINE CR1 1252 1477 -100 28 0 0 0 chr4 68828599 68828627 -133499720 + AT_rich Low_complexity Low_complexity 1 28 0 1997 109 4 0 chr4 68828862 68829137 -133499210 + AluSq SINE Alu 26 301 -12 22 56 0 0 chr4 68830498 68830534 -133497813 + AT_rich Low_complexity Low_complexity 1 36 0 1927 160 0 10 chr4 68831131 68831444 -133496903 - AluSx SINE Alu -2 310 1 306 290 0 43 chr4 68832991 68833084 -133495263 - L1MC4 LINE L1 -1340 6702 6614 32 0 0 0 chr4 68834158 68834190 -133494157 + AT_rich Low_complexity Low_complexity 1 32 0 409 313 57 18 chr4 68834216 68834443 -133493904 + L1 LINE L1 4420 4655 -1491 232 236 0 0 chr4 68834542 68834597 -133493750 + L1 LINE L1 4791 4845 -1301 2098 264 8 15 chr4 68834598 68835121 -133493226 + MLT1F LTR MaLR 24 542 0 344 320 64 68 chr4 68835195 68835429 -133492918 - MLT2E LTR ERVL -376 252 20 232 331 56 21 chr4 68835479 68835621 -133492726 + L1 LINE L1 3973 4119 -2027 7536 244 57 19 chr4 68836146 68839261 -133489086 - L1MC1 LINE L1 -255 6078 2851 267 284 128 0 chr4 68839744 68839846 -133488501 - MIR3 SINE MIR -6 202 88 771 223 95 93 chr4 68840278 68840829 -133487518 + L1MC5 LINE L1 6751 7305 -656 240 35 0 0 chr4 68840829 68840858 -133487489 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 771 223 95 93 chr4 68840858 68840894 -133487453 + L1MC5 LINE L1 7305 7339 -622 222 232 0 36 chr4 68840903 68840959 -133487388 + GA-rich Low_complexity Low_complexity 3 56 0 504 191 0 0 chr4 68841113 68841197 -133487150 + MLT1A1 LTR MaLR 1 84 -281 922 171 6 6 chr4 68841199 68841374 -133486973 + AluSp SINE Alu 137 311 -2 795 279 19 33 chr4 68841374 68841589 -133486758 + MLT1A1 LTR MaLR 77 288 -77 354 322 11 0 chr4 68841589 68841679 -133486668 + MLT-int LTR MaLR 1256 1346 -389 2151 210 14 2 chr4 68841679 68842108 -133486239 + MLT1A1-int LTR MaLR 1301 1734 -1 1400 230 21 45 chr4 68842108 68842482 -133485865 + MLT1A1 LTR MaLR 1 365 0 25 75 0 0 chr4 68842537 68842590 -133485757 + AT_rich Low_complexity Low_complexity 1 53 0 1633 192 27 40 chr4 68842855 68843225 -133485122 - MLT1A1 LTR MaLR 0 365 1 381 281 0 0 chr4 68843296 68843392 -133484955 - MER5A DNA MER1_type -83 106 11 186 43 0 0 chr4 68846332 68846355 -133481992 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2887 181 32 0 chr4 68846402 68846939 -133481408 - Tigger1 DNA MER2_type -1 2417 1864 406 267 219 0 chr4 68847946 68848092 -133480255 - MER5A DNA MER1_type -2 187 10 241 320 19 10 chr4 68848114 68848217 -133480130 + MER5A DNA MER1_type 24 127 -62 25 0 0 0 chr4 68848378 68848403 -133479944 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr4 68848522 68848543 -133479804 + AT_rich Low_complexity Low_complexity 1 21 0 37 93 0 0 chr4 68849053 68849160 -133479187 + AT_rich Low_complexity Low_complexity 1 107 0 2207 118 3 0 chr4 68849247 68849577 -133478770 + L1PA13 LINE L1 5827 6157 -6 34 42 0 0 chr4 68849579 68849627 -133478720 + AT_rich Low_complexity Low_complexity 1 48 0 13008 159 21 20 chr4 68849688 68850730 -133477617 - Tigger1 DNA MER2_type 0 2418 1378 1962 117 14 3 chr4 68850730 68851021 -133477326 + AluY SINE Alu 5 298 -13 13008 159 21 20 chr4 68851021 68852395 -133475952 - Tigger1 DNA MER2_type -1040 1378 1 1987 116 44 0 chr4 68852410 68852703 -133475644 - AluY SINE Alu -5 306 1 21 0 0 0 chr4 68852976 68852997 -133475350 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr4 68853426 68853455 -133474892 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr4 68853652 68853682 -133474665 + AT_rich Low_complexity Low_complexity 1 30 0 472 318 76 25 chr4 68854331 68854529 -133473818 + MIR SINE MIR 53 260 -2 1471 231 75 16 chr4 68856462 68856903 -133471444 - MLT1C LTR MaLR 0 467 1 24 0 0 0 chr4 68857714 68857738 -133470609 + AT_rich Low_complexity Low_complexity 1 24 0 5029 214 8 41 chr4 68857738 68857908 -133470439 - L1 LINE L1 -1853 4293 4119 1272 49 0 27 chr4 68857908 68858092 -133470255 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 5029 214 8 41 chr4 68858092 68859190 -133469157 - L1 LINE L1 -2027 4119 3067 3416 114 4 30 chr4 68859209 68859898 -133468449 + L1P5 LINE L1 5104 5773 -378 316 287 23 0 chr4 68859937 68860024 -133468323 + L1MC4 LINE L1 6615 6703 -1339 311 294 0 22 chr4 68859968 68860060 -133468287 - L1MC4 LINE L1 -1339 6703 6614 * 301 227 23 0 chr4 68860062 68860150 -133468197 - L1MC4 LINE L1 -1339 6703 6614 301 227 23 0 chr4 68860154 68860242 -133468105 - L1MC4 LINE L1 -1339 6703 6614 308 232 73 0 chr4 68860243 68860325 -133468022 - L1MC4 LINE L1 -1340 6702 6615 250 241 0 0 chr4 68860330 68860388 -133467959 - MER4-int LTR ERV1 -5436 1162 1105 2323 131 0 5 chr4 68860388 68860755 -133467592 + L1PB1 LINE L1 5787 6151 0 212 59 29 0 chr4 68860879 68860913 -133467434 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 27 0 0 0 chr4 68861105 68861132 -133467215 + AT_rich Low_complexity Low_complexity 1 27 0 205 384 0 0 chr4 68861886 68861959 -133466388 + MIR SINE MIR 72 144 -64 2066 108 13 7 chr4 68862165 68862470 -133465877 - AluSx SINE Alu -5 307 1 9293 178 10 9 chr4 68912471 68915056 -133413291 + L1PA13 LINE L1 3544 6155 -8 330 292 19 43 chr4 68915159 68915320 -133413027 + HAL1 LINE L1 1982 2138 -369 228 163 23 0 chr4 68915410 68915453 -133412894 + (TG)n Simple_repeat Simple_repeat 2 45 0 287 130 19 0 chr4 68915999 68916053 -133412294 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 23 0 0 0 chr4 68916227 68916250 -133412097 + AT_rich Low_complexity Low_complexity 1 23 0 46 62 0 0 chr4 68916530 68916611 -133411736 + AT_rich Low_complexity Low_complexity 1 81 0 21 57 0 0 chr4 68919007 68919042 -133409305 + AT_rich Low_complexity Low_complexity 1 35 0 232 214 103 16 chr4 68919135 68919261 -133409086 + L1MC4 LINE L1 7697 7833 -209 22 56 0 0 chr4 68919345 68919381 -133408966 + AT_rich Low_complexity Low_complexity 1 36 0 735 245 28 28 chr4 68921285 68921497 -133406850 - MER20 DNA MER1_type -5 214 3 435 284 47 16 chr4 68922014 68922204 -133406143 + L1MB1 LINE L1 2 197 -5694 2765 155 10 43 chr4 68922245 68922825 -133405522 - L1 LINE L1 -1052 5094 4534 5104 227 60 14 chr4 68922835 68924247 -133404100 + L1MB1 LINE L1 3052 4527 -1443 1055 210 23 39 chr4 68924247 68924504 -133403843 - MLT1A1 LTR MaLR 0 365 113 1911 201 19 6 chr4 68924564 68924928 -133403419 - MLT1A1-int LTR MaLR 0 1735 1367 2580 229 71 84 chr4 68924931 68925807 -133402540 - MLT1A1-int LTR MaLR -636 1099 236 514 172 30 0 chr4 68925808 68925907 -133402440 - MLT1A2 LTR MaLR -272 102 1 862 194 54 172 chr4 68925907 68925986 -133402361 + L1MB1 LINE L1 4523 4610 -1360 2106 137 0 0 chr4 68925986 68926292 -133402055 + AluSg SINE Alu 1 306 -4 862 194 54 172 chr4 68926292 68926677 -133401670 + L1MB1 LINE L1 4610 4932 -1038 1850 247 98 29 chr4 68926684 68927296 -133401051 - MER50 LTR ERV1 -5 729 76 978 226 73 5 chr4 68927353 68927641 -133400706 + L1MB1 LINE L1 4922 5227 -743 845 335 152 0 chr4 68927642 68928007 -133400340 + MSTB LTR MaLR 1 453 -4 1727 226 16 14 chr4 68928012 68928442 -133399905 + L1MB1 LINE L1 5225 5655 -337 361 50 0 0 chr4 68928444 68928499 -133399848 - MLT2A1 LTR ERVL 0 444 399 408 137 59 0 chr4 68928499 68928652 -133399695 + (TA)n Simple_repeat Simple_repeat 1 162 0 2883 86 28 2 chr4 68928660 68928674 -133399673 - MLT2A1 LTR ERVL -41 479 467 225 0 0 0 chr4 68928674 68928699 -133399648 + (CA)n Simple_repeat Simple_repeat 2 26 0 2883 86 28 2 chr4 68928699 68929087 -133399260 - MLT2A1 LTR ERVL -53 467 1 1585 193 9 15 chr4 68929087 68929429 -133398918 + L1MB1 LINE L1 5653 5992 0 180 0 0 0 chr4 68929595 68929615 -133398732 + (TC)n Simple_repeat Simple_repeat 1 20 0 842 158 95 13 chr4 68929616 68929774 -133398573 - AluJb SINE Alu -33 279 109 21 57 0 0 chr4 68929947 68929982 -133398365 + AT_rich Low_complexity Low_complexity 1 35 0 27 73 0 0 chr4 68932071 68932126 -133396221 + AT_rich Low_complexity Low_complexity 1 55 0 216 333 0 50 chr4 68932318 68932438 -133395909 - MIR SINE MIR -10 252 139 511 252 60 9 chr4 68932727 68932945 -133395402 - MER114 LTR ERV -407 241 13 55 83 0 0 chr4 68933211 68933343 -133395004 + AT_rich Low_complexity Low_complexity 1 132 0 22 0 0 0 chr4 68933487 68933509 -133394838 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 68934233 68934255 -133394092 + AT_rich Low_complexity Low_complexity 1 22 0 797 284 22 14 chr4 68934842 68935064 -133393283 - MIR SINE MIR -34 228 5 185 260 135 10 chr4 68936308 68936404 -133391943 + L2 LINE L2 1939 2046 -1268 415 283 76 96 chr4 68936404 68936661 -133391686 + MIR SINE MIR 3 255 -7 250 340 57 25 chr4 68936666 68936825 -133391522 + L2 LINE L2 2074 2237 -1077 270 275 44 0 chr4 68937224 68937315 -133391032 - L1P4 LINE L1 -449 5716 5622 * 302 249 184 16 chr4 68937301 68937486 -133390861 - L1MC/D LINE L1 -2193 5592 5377 792 306 26 26 chr4 68938328 68938671 -133389676 + L2 LINE L2 2152 2494 -820 279 260 26 0 chr4 68938702 68938779 -133389568 - L2 LINE L2 -302 3011 2933 202 204 148 0 chr4 68938806 68938860 -133389487 + L2 LINE L2 3249 3310 -3 207 250 0 0 chr4 68939065 68939109 -133389238 + L2 LINE L2 3265 3308 -5 269 383 62 0 chr4 68939201 68939363 -133388984 - MIR3 SINE MIR -4 204 33 2352 179 19 12 chr4 68940604 68941033 -133387314 - MSTB1 LTR MaLR 0 432 1 462 254 98 130 chr4 68941466 68941943 -133386404 + LTR40a LTR ERVL 1 462 -57 247 299 103 9 chr4 68942255 68942362 -133385985 + MIR SINE MIR 64 180 -82 22 35 0 0 chr4 68942406 68942435 -133385912 + AT_rich Low_complexity Low_complexity 1 29 0 217 257 29 105 chr4 68942552 68942657 -133385690 + L2 LINE L2 3151 3247 -25 1749 181 39 3 chr4 68942820 68943151 -133385196 + MER61A LTR ERV1 1 343 0 3000 180 87 34 chr4 68943152 68943890 -133384457 + MER61A-int LTR ERV1 1 777 -4440 * 20046 92 19 15 chr4 68943883 68946895 -133381452 + MER61A-int LTR ERV1 1320 4387 -830 419 363 20 10 chr4 68946913 68947117 -133381230 - MIR SINE MIR 0 262 57 249 246 0 0 chr4 68947144 68947201 -133381146 + GA-rich Low_complexity Low_complexity 2 58 0 278 50 25 0 chr4 68947382 68947422 -133380925 + (TA)n Simple_repeat Simple_repeat 2 42 0 222 37 0 0 chr4 68948105 68948132 -133380215 + (T)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr4 68948236 68948258 -133380089 + AT_rich Low_complexity Low_complexity 1 22 0 246 314 81 0 chr4 68948579 68948665 -133379682 - L2 LINE L2 -2 3311 3219 438 298 122 46 chr4 68948933 68949152 -133379195 - L2 LINE L2 -418 2896 2652 1684 110 41 4 chr4 68949152 68949398 -133378949 + AluSg SINE Alu 46 300 -10 438 298 122 46 chr4 68949398 68949440 -133378907 - L2 LINE L2 -662 2652 2615 2385 324 121 38 chr4 68949539 68951163 -133377184 - L2 LINE L2 -1506 1808 50 507 51 66 22 chr4 68952884 68953021 -133375326 + (TA)n Simple_repeat Simple_repeat 1 143 0 1900 149 0 0 chr4 68953022 68953303 -133375044 - AluSx SINE Alu -31 281 1 3660 116 11 5 chr4 68954177 68954747 -133373600 - L1PA13 LINE L1 0 6163 5591 32 43 0 0 chr4 68955114 68955160 -133373187 + AT_rich Low_complexity Low_complexity 1 46 0 206 216 0 0 chr4 68955210 68955247 -133373100 + (TG)n Simple_repeat Simple_repeat 2 38 0 255 140 73 15 chr4 68955389 68955525 -133372822 + (TA)n Simple_repeat Simple_repeat 1 144 0 226 262 0 0 chr4 68955525 68955586 -133372761 + MLT1H1 LTR MaLR 495 555 0 25 70 0 35 chr4 68956072 68956158 -133372189 + AT_rich Low_complexity Low_complexity 1 83 0 383 85 0 49 chr4 68956409 68956491 -133371856 + (TA)n Simple_repeat Simple_repeat 1 78 0 213 94 0 0 chr4 68957245 68957277 -133371070 + (CA)n Simple_repeat Simple_repeat 2 33 0 380 264 58 19 chr4 68957739 68957947 -133370400 + L1ME1 LINE L1 5090 5305 -841 1648 155 63 29 chr4 68957948 68958297 -133370050 - THE1C LTR MaLR 0 375 15 9060 142 48 12 chr4 68958302 68959825 -133368522 - THE1C-int LTR MaLR 0 1580 3 1827 169 53 11 chr4 68959827 68960187 -133368160 - THE1C LTR MaLR 0 375 1 2349 269 37 33 chr4 68960187 68960996 -133367351 + L1ME1 LINE L1 5299 6110 -56 31 26 0 0 chr4 68961114 68961152 -133367195 + AT_rich Low_complexity Low_complexity 1 38 0 1759 250 82 44 chr4 68961328 68961964 -133366383 + MER76 LTR ERV 2 661 -27 31 58 0 0 chr4 68964021 68964073 -133364274 + AT_rich Low_complexity Low_complexity 1 52 0 22 70 0 0 chr4 68967278 68967321 -133361026 + AT_rich Low_complexity Low_complexity 1 43 0 358 297 36 0 chr4 68968144 68968255 -133360092 - MER94 DNA DNA -16 118 4 3524 164 25 9 chr4 68969272 68969918 -133358429 + Tigger3b DNA MER2_type 1 656 -575 1106 178 15 15 chr4 68969921 68970140 -133358207 - AluJo SINE Alu 0 304 86 3244 165 14 2 chr4 68970140 68970715 -133357632 + Tigger3b DNA MER2_type 649 1230 -1 13440 155 29 6 chr4 68970731 68973096 -133355251 + Tigger1 DNA MER2_type 1 2418 0 481 280 78 36 chr4 68973096 68973279 -133355068 - MIR SINE MIR -12 250 57 269 291 219 24 chr4 68973815 68974025 -133354322 - Charlie8 DNA MER1_type -2132 285 35 1428 191 85 0 chr4 68974640 68974912 -133353435 - AluSx SINE Alu -13 299 5 649 319 96 28 chr4 68975076 68975430 -133352917 - L3 LINE CR1 -47 1530 1153 23 0 0 0 chr4 68975790 68975813 -133352534 + AT_rich Low_complexity Low_complexity 1 23 0 1294 102 41 25 chr4 68975879 68976076 -133352271 - AluSp SINE Alu -7 306 107 441 226 129 32 chr4 68976380 68976535 -133351812 + MLT1H1 LTR MaLR 386 555 0 21 0 0 0 chr4 68977256 68977277 -133351070 + AT_rich Low_complexity Low_complexity 1 21 0 2349 247 42 11 chr4 68977786 68978356 -133349991 + ERVL LTR ERVL 3330 3917 -1847 886 171 29 0 chr4 68978596 68978766 -133349581 + L1MB5 LINE L1 5991 6165 -9 1834 159 63 27 chr4 68978806 68979139 -133349208 - MLT1B LTR MaLR 0 390 46 336 76 30 15 chr4 68979303 68979369 -133348978 + (TA)n Simple_repeat Simple_repeat 2 68 0 243 320 31 10 chr4 68979577 68979674 -133348673 - MIR SINE MIR -5 257 159 234 81 0 0 chr4 68980085 68980122 -133348225 + (GA)n Simple_repeat Simple_repeat 2 38 0 809 246 0 0 chr4 68980702 68980893 -133347454 - L1 LINE L1 -1046 5100 4910 848 222 35 5 chr4 68980894 68981097 -133347250 - L1PA16 LINE L1 -8 6158 5950 1948 167 49 10 chr4 68981140 68981530 -133346817 + L1MB2 LINE L1 5635 6039 -132 512 224 0 8 chr4 68981595 68981727 -133346620 + L1MB4 LINE L1 6051 6180 0 807 107 0 15 chr4 68982002 68982133 -133346214 + L1PA13 LINE L1 6029 6157 -6 22622 38 1 1 chr4 68982404 68985964 -133342383 - L1PA4 LINE L1 -3 6152 2592 5037 130 15 10 chr4 68987689 68988488 -133339859 + L1PA13 LINE L1 5357 6159 -4 1492 124 0 0 chr4 68989067 68989349 -133338998 + L1PA11 LINE L1 5948 6229 0 316 310 60 22 chr4 68989589 68989773 -133338574 + L1ME2 LINE L1 5731 5921 -243 1182 225 58 52 chr4 68990138 68990502 -133337845 - MLT1A2 LTR MaLR -7 367 2 432 190 76 101 chr4 68990557 68990715 -133337632 + L1M4b LINE L1 2 155 -6704 41 36 0 0 chr4 68990715 68990770 -133337577 + AT_rich Low_complexity Low_complexity 1 55 0 2279 293 87 10 chr4 68990798 68991589 -133336758 + L1M4b LINE L1 384 1235 -5624 240 357 0 13 chr4 68991587 68991741 -133336606 + L1ME LINE L1 5746 5897 -267 * 29 60 0 0 chr4 68991879 68991929 -133336418 + AT_rich Low_complexity Low_complexity 1 50 0 300 298 83 40 chr4 68992124 68992376 -133335971 + L1ME LINE L1 5594 5856 -314 1759 121 82 0 chr4 68992389 68992669 -133335678 + AluSq SINE Alu 1 303 -10 35 83 0 0 chr4 68992719 68992803 -133335544 + AT_rich Low_complexity Low_complexity 1 84 0 617 384 55 21 chr4 68994300 68994719 -133333628 + L2 LINE L2 2838 3270 -2 1090 299 61 6 chr4 68994820 68995165 -133333182 - MER70B LTR ERVL -211 367 4 258 32 0 0 chr4 68995898 68995929 -133332418 + (CA)n Simple_repeat Simple_repeat 1 31 0 2205 117 0 0 chr4 68996251 68996560 -133331787 + AluSc SINE Alu 1 309 0 22 56 0 0 chr4 68996619 68996655 -133331692 + AT_rich Low_complexity Low_complexity 1 36 0 207 264 19 19 chr4 68997055 68997108 -133331239 - MIR SINE MIR -123 85 33 22 70 0 0 chr4 68997135 68997178 -133331169 + AT_rich Low_complexity Low_complexity 1 43 0 251 388 37 48 chr4 68998394 68998667 -133329680 + MLT1K LTR MaLR 17 286 -302 322 230 14 0 chr4 68998827 68998901 -133329446 + MLT1K LTR MaLR 509 583 -5 23 78 0 0 chr4 68999120 68999171 -133329176 + AT_rich Low_complexity Low_complexity 1 51 0 1857 126 48 0 chr4 68999240 68999540 -133328807 + AluSx SINE Alu 1 313 0 201 217 0 58 chr4 68999871 68999940 -133328407 + T-rich Low_complexity Low_complexity 2 66 0 240 202 0 53 chr4 69002658 69002752 -133325595 + CT-rich Low_complexity Low_complexity 2 90 0 4279 140 45 25 chr4 69003097 69003866 -133324481 - LTR1 LTR ERV1 0 785 1 184 321 0 0 chr4 69003988 69004041 -133324306 - L2 LINE L2 -4 3309 3257 261 234 39 13 chr4 69004179 69004204 -133324143 - MIR SINE MIR -1 261 238 3146 131 19 80 chr4 69004204 69004854 -133323493 - MER4B LTR ERV1 0 610 1 261 234 39 13 chr4 69004854 69004905 -133323442 - MIR SINE MIR -24 238 183 193 140 35 0 chr4 69005595 69005652 -133322695 + (TA)n Simple_repeat Simple_repeat 1 59 0 1272 280 91 11 chr4 69006111 69006572 -133321775 - MLT1D LTR MaLR -2 503 6 945 191 15 20 chr4 69008565 69008764 -133319583 - MLT1D LTR MaLR -8 497 300 21 0 0 0 chr4 69008991 69009012 -133319335 + AT_rich Low_complexity Low_complexity 1 21 0 1671 206 34 75 chr4 69009052 69009546 -133318801 + MLT1D LTR MaLR 24 497 -8 22 0 0 0 chr4 69009986 69010008 -133318339 + AT_rich Low_complexity Low_complexity 1 22 0 686 239 131 23 chr4 69010030 69010137 -133318210 - LTR16A1 LTR ERVL 0 457 363 2466 149 26 14 chr4 69010137 69010560 -133317787 - MSTA LTR MaLR 0 428 1 686 239 131 23 chr4 69010560 69010711 -133317636 - LTR16A1 LTR ERVL -94 363 171 2388 82 0 13 chr4 69011210 69011516 -133316831 + AluY SINE Alu 1 302 -9 258 32 0 0 chr4 69011516 69011547 -133316800 + (TA)n Simple_repeat Simple_repeat 1 31 0 2217 172 14 45 chr4 69013109 69013550 -133314797 - MSTB1 LTR MaLR -1 419 5 213 330 82 0 chr4 69013600 69013697 -133314650 + MIR SINE MIR 79 183 -79 1413 161 24 0 chr4 69014215 69014463 -133313884 - L1MC1 LINE L1 -16 6317 6064 905 152 12 6 chr4 69014483 69014654 -133313693 - L1MC1 LINE L1 -348 5985 5814 * 1378 149 48 0 chr4 69014661 69014929 -133313418 - L1PA16 LINE L1 -3 6163 5883 8099 53 1 7 chr4 69014929 69016765 -133311582 - L1PA4 LINE L1 -8 6147 4356 3194 175 21 2 chr4 69016757 69017329 -133311018 - L1MC1 LINE L1 -497 5836 5254 * 878 137 8 0 chr4 69017977 69018108 -133310239 - L1MC1 LINE L1 -20 6313 6182 34 65 0 0 chr4 69018539 69018601 -133309746 + AT_rich Low_complexity Low_complexity 1 62 0 1355 91 10 5 chr4 69019046 69019244 -133309103 + L1PA5 LINE L1 5955 6153 -1 305 347 129 22 chr4 69020345 69020662 -133307685 - L2 LINE L2 -849 2465 2115 2871 141 130 2 chr4 69020802 69021271 -133307076 - MER1A DNA MER1_type 0 529 1 1071 229 144 16 chr4 69021400 69021705 -133306642 + MSTD LTR MaLR 1 344 -52 339 270 122 38 chr4 69021732 69021995 -133306352 - L1MC5 LINE L1 -67 7894 7610 1483 217 0 17 chr4 69022032 69022331 -133306016 + AluJo SINE Alu 11 304 -8 210 162 0 0 chr4 69022800 69022837 -133305510 + MIR SINE MIR 222 258 -4 429 275 30 30 chr4 69026387 69026518 -133301829 + MIR SINE MIR 14 144 -118 23 33 0 0 chr4 69026968 69026998 -133301349 + AT_rich Low_complexity Low_complexity 1 30 0 2077 53 0 8 chr4 69027321 69027586 -133300761 + L1PA5 LINE L1 5892 6154 0 21 0 0 0 chr4 69029542 69029563 -133298784 + AT_rich Low_complexity Low_complexity 1 21 0 253 324 7 90 chr4 69030200 69030345 -133298002 + L2 LINE L2 2923 3055 -217 1986 226 44 22 chr4 69030493 69031041 -133297306 + L1MD3 LINE L1 7424 7983 -12 225 94 0 0 chr4 69032998 69033030 -133295317 + (TG)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr4 69033216 69033238 -133295109 + AT_rich Low_complexity Low_complexity 1 22 0 2171 113 0 0 chr4 69033238 69033546 -133294801 + AluSx SINE Alu 1 308 0 855 20 0 0 chr4 69033693 69033794 -133294553 + (GAA)n Simple_repeat Simple_repeat 2 102 0 185 154 26 0 chr4 69034815 69034854 -133293493 + CT-rich Low_complexity Low_complexity 1 40 0 1449 223 49 67 chr4 69036248 69036759 -133291588 - MLT1D LTR MaLR 0 505 4 1621 60 33 0 chr4 69037143 69037358 -133290989 - L1PA5 LINE L1 -3 6151 5930 2063 106 4 0 chr4 69037363 69037636 -133290711 - AluSc SINE Alu -35 274 1 1970 298 142 38 chr4 69038408 69038906 -133289441 + L2 LINE L2 1737 2181 -1132 369 0 0 0 chr4 69038906 69038947 -133289400 + (CA)n Simple_repeat Simple_repeat 2 42 0 1970 298 142 38 chr4 69038947 69039586 -133288761 + L2 LINE L2 2181 3009 -304 21 36 0 0 chr4 69039644 69039672 -133288675 + AT_rich Low_complexity Low_complexity 1 28 0 626 304 42 14 chr4 69039782 69039996 -133288351 + MIR SINE MIR 9 228 -34 491 195 201 0 chr4 69040531 69040662 -133287685 + LTR28 LTR ERV1 1 147 -873 12767 26 0 0 chr4 69040662 69042940 -133285407 - L1PA3 LINE L1 0 6155 3878 29535 48 40 4 chr4 69043040 69045560 -133282787 - L1PA3 LINE L1 -2206 3940 1236 187 31 62 0 chr4 69045560 69045592 -133282755 + (CATTT)n Simple_repeat Simple_repeat 5 38 0 29535 48 40 4 chr4 69045592 69046862 -133281485 - L1PA3 LINE L1 -4910 1236 13 1585 202 83 4 chr4 69046961 69047504 -133280843 + LTR28 LTR ERV1 387 1020 0 1836 149 0 40 chr4 69048335 69048658 -133279689 + AluSx SINE Alu 1 311 0 21 0 0 0 chr4 69048729 69048750 -133279597 + AT_rich Low_complexity Low_complexity 1 21 0 1010 326 36 16 chr4 69050193 69050580 -133277767 - LTR16A LTR ERVL -31 419 25 805 342 53 40 chr4 69051146 69051769 -133276578 - ERVL LTR ERVL -953 4811 4181 480 319 55 46 chr4 69051881 69052314 -133276033 - ERVL LTR ERVL -1209 3787 3351 255 350 54 73 chr4 69052333 69052687 -133275660 - ERVL LTR ERVL -2137 3627 3281 1179 325 81 18 chr4 69052784 69053866 -133274481 - ERVL LTR ERVL -1900 3096 1917 2079 106 0 3 chr4 69054336 69054619 -133273728 + AluSq SINE Alu 1 282 -31 261 197 0 0 chr4 69054620 69054681 -133273666 + (TA)n Simple_repeat Simple_repeat 1 61 0 545 212 32 107 chr4 69054923 69055268 -133273079 - MER97c DNA MER1_type? 0 1090 772 945 191 72 167 chr4 69055692 69056272 -133272075 - MER97b DNA MER1_type? -458 595 71 639 361 161 16 chr4 69056714 69057515 -133270832 + L2 LINE L2 1986 2902 -412 3298 193 16 56 chr4 69057566 69058267 -133270080 + MER52A LTR ERV1 1083 1755 0 219 261 13 121 chr4 69058296 69058453 -133269894 + L2 LINE L2 3005 3144 -169 205 88 29 0 chr4 69059517 69059551 -133268796 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 641 216 0 8 chr4 69059696 69059830 -133268517 - FLAM_A SINE Alu 0 133 1 291 261 29 0 chr4 69059865 69059934 -133268413 - MLT1H1 LTR MaLR -454 101 31 310 269 138 82 chr4 69059992 69060274 -133268073 - MLT1H1-int LTR MaLR 0 1371 1074 4207 149 24 7 chr4 69060483 69061182 -133267165 + MER50 LTR ERV1 1 711 -23 4020 180 92 13 chr4 69061645 69061827 -133266520 - MER4D LTR ERV1 -2 901 735 2508 137 45 6 chr4 69061827 69062295 -133266052 + LTR19A LTR ERV1 1 486 0 4020 180 92 13 chr4 69062295 69062947 -133265400 - MER4D LTR ERV1 -168 735 1 25 51 0 0 chr4 69064254 69064293 -133264054 + AT_rich Low_complexity Low_complexity 1 39 0 1771 126 68 12 chr4 69064631 69064956 -133263391 + MER61A LTR ERV1 1 343 0 2205 164 47 25 chr4 69064956 69065445 -133262902 + MER61A-int LTR ERV1 1 500 -4717 927 106 56 56 chr4 69065454 69065634 -133262713 + MER61A-int LTR ERV1 1408 1587 -3630 18436 103 36 11 chr4 69065638 69068338 -133260009 + MER61A-int LTR ERV1 2400 5172 -45 2032 99 3 46 chr4 69068338 69068661 -133259686 - AluY SINE Alu 0 311 3 18436 103 36 11 chr4 69068661 69068709 -133259638 + MER61A-int LTR ERV1 5172 5217 0 1790 133 88 6 chr4 69068710 69069027 -133259320 + MER61A LTR ERV1 1 343 0 893 242 91 20 chr4 69069027 69069565 -133258782 + MLT1E1 LTR MaLR 17 651 -3 285 237 208 35 chr4 69069605 69069754 -133258593 - MER5A DNA MER1_type -7 182 4 459 297 109 13 chr4 69071027 69071266 -133257081 - L1ME3A LINE L1 -69 6101 5840 324 316 78 5 chr4 69071287 69071480 -133256867 - L1ME3A LINE L1 -377 5793 5587 264 298 71 0 chr4 69071664 69071748 -133256599 - MLT1E LTR MaLR -16 577 488 1299 261 65 67 chr4 69071752 69072262 -133256085 - MLT1E LTR MaLR -66 527 19 246 283 61 75 chr4 69072318 69072716 -133255631 - L1MEc LINE L1 -913 1663 1455 230 230 35 23 chr4 69072734 69072821 -133255526 + T-rich Low_complexity Low_complexity 3 90 0 1240 118 43 5 chr4 69072973 69073184 -133255163 - L1PA13 LINE L1 -1 6162 5944 8405 205 30 26 chr4 69073219 69074679 -133253668 - L1PA16 LINE L1 -9 6855 5403 2040 130 53 31 chr4 69074679 69075034 -133253313 - THE1B LTR MaLR 0 364 2 8405 205 30 26 chr4 69075034 69076846 -133251501 - L1PA16 LINE L1 -1461 5403 2924 221 155 17 0 chr4 69076847 69076905 -133251442 + (TA)n Simple_repeat Simple_repeat 2 60 0 378 169 0 0 chr4 69076905 69076970 -133251377 - L1PA16 LINE L1 -4432 2417 2353 519 95 0 0 chr4 69076970 69077044 -133251303 + (TA)n Simple_repeat Simple_repeat 1 74 0 11721 181 12 31 chr4 69077051 69079375 -133248972 - L1PA15-16 LINE L1 -3945 2904 739 1694 90 43 13 chr4 69079477 69079710 -133248637 - AluSc SINE Alu -31 278 39 47 0 0 0 chr4 69079711 69079758 -133248589 + AT_rich Low_complexity Low_complexity 1 47 0 594 227 8 8 chr4 69079766 69079894 -133248453 - FLAM_C SINE Alu -5 128 1 453 273 21 0 chr4 69079894 69080037 -133248310 - L1MCc LINE L1 -4955 1468 1323 528 300 48 35 chr4 69081388 69081615 -133246732 + MIR SINE MIR 6 235 -27 972 72 7 7 chr4 69081719 69081858 -133246489 - AluSp/q SINE Alu 0 313 175 2149 108 7 3 chr4 69083746 69084043 -133244304 + AluY SINE Alu 1 298 -13 317 237 205 16 chr4 69084073 69084263 -133244084 + L1MC4 LINE L1 6471 6696 -1346 419 227 21 71 chr4 69084345 69084486 -133243861 + L1MC4 LINE L1 7904 8037 -5 23 0 0 0 chr4 69084628 69084651 -133243696 + AT_rich Low_complexity Low_complexity 1 23 0 4033 84 29 0 chr4 69084953 69085515 -133242832 + LTR19B LTR ERV1 1 578 -2 23 33 0 0 chr4 69086055 69086085 -133242262 + AT_rich Low_complexity Low_complexity 1 30 0 1983 119 25 7 chr4 69086332 69086618 -133241729 + AluSc SINE Alu 1 291 -18 1922 259 6 12 chr4 69087011 69087501 -133240846 - L1ME1 LINE L1 -243 5923 5437 413 268 21 0 chr4 69089254 69089351 -133238996 - LTR16A LTR ERVL -104 346 248 1476 197 0 35 chr4 69090357 69090667 -133237680 - AluJo SINE Alu -10 302 4 21 71 0 0 chr4 69091012 69091054 -133237293 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr4 69092132 69092167 -133236180 + AT_rich Low_complexity Low_complexity 1 35 0 1926 126 22 0 chr4 69092322 69092599 -133235748 + AluSx SINE Alu 3 285 -27 279 0 0 0 chr4 69092604 69092635 -133235712 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 29 28 0 0 chr4 69092765 69092801 -133235546 + AT_rich Low_complexity Low_complexity 1 36 0 2053 129 7 0 chr4 69093303 69093598 -133234749 + AluSx SINE Alu 1 297 -15 8573 193 33 42 chr4 69093637 69094592 -133233755 + L1MA6 LINE L1 3274 4236 -2064 306 0 0 0 chr4 69094592 69094626 -133233721 + (TA)n Simple_repeat Simple_repeat 1 34 0 8573 193 33 42 chr4 69094626 69096734 -133231613 + L1MA6 LINE L1 4236 6296 -4 23 0 0 0 chr4 69096808 69096831 -133231516 + AT_rich Low_complexity Low_complexity 1 23 0 422 276 83 17 chr4 69097259 69097440 -133230907 + MIR SINE MIR 20 212 -50 7086 57 1 1 chr4 69098382 69099328 -133229019 + L1PA7 LINE L1 5202 6149 -5 180 416 19 13 chr4 69099712 69099866 -133228481 - MIR SINE MIR -1 261 107 1746 207 50 6 chr4 69100033 69100376 -133227971 + MLT1A1 LTR MaLR 8 365 0 8260 200 92 17 chr4 69100403 69102406 -133225941 + L1MCa LINE L1 20 2173 -4253 8623 191 40 19 chr4 69102414 69104400 -133223947 + L1M1 LINE L1 3073 5125 -2440 216 0 0 0 chr4 69104400 69104424 -133223923 + (CA)n Simple_repeat Simple_repeat 2 25 0 8623 191 40 19 chr4 69104424 69105022 -133223325 + L1M1 LINE L1 5125 5709 -1856 799 162 39 3 chr4 69105019 69105192 -133223155 + L1M1 LINE L1 6020 6194 -1371 * 330 325 26 8 chr4 69105213 69105330 -133223017 + MIR SINE MIR 86 204 -58 5181 152 63 17 chr4 69105330 69106799 -133221548 + L1MA3 LINE L1 4770 6305 0 1046 170 79 0 chr4 69106803 69107068 -133221279 + L1MCa LINE L1 2172 2457 -3969 901 182 30 0 chr4 69107053 69107218 -133221129 - L1MB8 LINE L1 -195 5983 5814 * 4051 207 55 21 chr4 69107225 69109175 -133219172 - L1MB3 LINE L1 -3 6180 4152 586 157 10 0 chr4 69109207 69109309 -133219038 - L1MB2 LINE L1 -153 6018 5916 980 239 47 4 chr4 69109349 69109604 -133218743 - L1MB3 LINE L1 -1990 4156 3891 1484 280 41 28 chr4 69109607 69110383 -133217964 + L1MCa LINE L1 2959 3744 -2682 1867 240 24 6 chr4 69110403 69110911 -133217436 + L1M4 LINE L1 4652 5168 -978 1772 186 48 3 chr4 69110931 69111286 -133217061 + L1MC1 LINE L1 5963 6333 0 221 220 51 17 chr4 69111462 69111521 -133216826 + MIR3 SINE MIR 133 193 -15 303 288 27 9 chr4 69111961 69112072 -133216275 - L1ME LINE L1 -512 5609 5497 1514 284 91 14 chr4 69112371 69112875 -133215472 - MLT1E LTR MaLR 0 593 51 24 0 0 0 chr4 69113006 69113030 -133215317 + AT_rich Low_complexity Low_complexity 1 24 0 30 27 0 0 chr4 69113448 69113485 -133214862 + AT_rich Low_complexity Low_complexity 1 37 0 35 63 0 0 chr4 69114354 69114417 -133213930 + AT_rich Low_complexity Low_complexity 1 63 0 411 326 158 10 chr4 69115124 69115320 -133213027 - MIR SINE MIR -31 231 7 316 141 40 10 chr4 69116620 69116719 -133211628 + (TA)n Simple_repeat Simple_repeat 1 102 0 28 29 0 0 chr4 69116781 69116816 -133211531 + AT_rich Low_complexity Low_complexity 1 35 0 2688 212 72 12 chr4 69117306 69118055 -133210292 - L1 LINE L1 -957 5189 4396 24 32 0 0 chr4 69121057 69121088 -133207259 + AT_rich Low_complexity Low_complexity 1 31 0 1536 166 77 40 chr4 69121589 69121939 -133206408 + THE1B LTR MaLR 2 364 0 1033 106 46 0 chr4 69121943 69122094 -133206253 + THE1B-int LTR MaLR 5 162 -1418 1027 262 68 16 chr4 69122105 69122529 -133205818 - L1ME3A LINE L1 -269 5893 5461 2154 133 15 0 chr4 69122529 69122866 -133205481 + L1PA13 LINE L1 5723 6064 -99 3029 259 47 32 chr4 69122868 69124146 -133204201 + L1M1 LINE L1 2324 3626 -3939 4807 221 57 17 chr4 69124179 69125001 -133203346 + L1M1 LINE L1 3595 4383 -3182 1899 154 64 14 chr4 69125001 69125358 -133202989 - THE1C LTR MaLR 0 375 1 8914 141 54 8 chr4 69125358 69126869 -133201478 - THE1C-int LTR MaLR 0 1580 1 1680 174 55 25 chr4 69126872 69127233 -133201114 - THE1C LTR MaLR -3 372 1 4807 221 57 17 chr4 69127233 69127795 -133200552 + L1M1 LINE L1 4384 5039 -2526 1476 212 9 3 chr4 69127805 69128154 -133200193 + L1MA4 LINE L1 5947 6297 -3 6108 149 45 7 chr4 69128175 69129302 -133199045 + Tigger3b DNA MER2_type 62 1231 0 1711 231 91 31 chr4 69129306 69129792 -133198555 - MLT2B3 LTR ERVL -39 515 1 7046 181 48 8 chr4 69129792 69131108 -133197239 - ERVL-B3 LTR ERVL -7 5757 4390 1459 188 44 30 chr4 69131108 69131406 -133196941 - MLT2B3 LTR ERVL -252 302 1 321 26 0 0 chr4 69131542 69131580 -133196767 + (TA)n Simple_repeat Simple_repeat 2 39 0 7507 158 18 5 chr4 69132292 69133574 -133194773 - HSMAR2 DNA Mariner -1 1301 3 241 222 16 0 chr4 69134315 69134378 -133193969 - L1M4 LINE L1 -1460 4686 4623 1915 153 57 25 chr4 69134665 69135018 -133193329 - THE1B LTR MaLR 0 364 1 10194 125 27 3 chr4 69135018 69136560 -133191787 - THE1B-int LTR MaLR 0 1580 2 1996 134 63 26 chr4 69136561 69136912 -133191435 - THE1B LTR MaLR 0 364 1 26 30 0 0 chr4 69137817 69137850 -133190497 + AT_rich Low_complexity Low_complexity 1 33 0 255 189 0 0 chr4 69137885 69137938 -133190409 + (TA)n Simple_repeat Simple_repeat 1 53 0 298 310 26 0 chr4 69137977 69138090 -133190257 + (TA)n Simple_repeat Simple_repeat 1 116 0 228 307 95 32 chr4 69138091 69138280 -133190067 - L1M4 LINE L1 -1202 4944 4744 2828 102 86 9 chr4 69138286 69138707 -133189640 - MLT2A2 LTR ERVL 0 453 1 2296 81 0 0 chr4 69138735 69139032 -133189315 + AluY SINE Alu 1 297 -14 459 92 0 0 chr4 69139034 69139099 -133189248 + (TA)n Simple_repeat Simple_repeat 2 66 0 340 182 0 0 chr4 69139100 69139155 -133189192 + LTR40a LTR ERVL 12 66 -453 1363 282 40 17 chr4 69139201 69139605 -133188742 + LTR40a LTR ERVL 10 422 -97 1841 134 18 7 chr4 69139634 69140086 -133188261 - AluSg SINE Alu 0 465 11 302 250 87 29 chr4 69140095 69140199 -133188148 - L1M4 LINE L1 -2494 3652 3543 25 0 0 0 chr4 69142341 69142366 -133185981 + AT_rich Low_complexity Low_complexity 1 25 0 31 44 0 0 chr4 69142384 69142429 -133185918 + AT_rich Low_complexity Low_complexity 1 45 0 306 295 58 0 chr4 69142437 69142576 -133185771 + L1M4 LINE L1 5087 5233 -913 268 299 14 56 chr4 69142745 69142889 -133185458 + L1M2 LINE L1 5489 5626 -686 5086 255 43 76 chr4 69143049 69145002 -133183345 + L1M3b LINE L1 11 1877 -4474 180 333 94 41 chr4 69145008 69145179 -133183168 - L2 LINE L2 -420 2894 2715 22 0 0 0 chr4 69145242 69145264 -133183083 + AT_rich Low_complexity Low_complexity 1 22 0 542 157 0 0 chr4 69145307 69145396 -133182951 - MER2 DNA MER2_type -137 208 120 505 234 9 19 chr4 69145690 69145797 -133182550 - MER2 DNA MER2_type -239 106 1 9094 29 3 0 chr4 69147547 69149415 -133178932 - L1PA3 LINE L1 0 6155 4286 18699 36 0 0 chr4 69149415 69151712 -133176635 + L1P LINE L1 2027 4323 -1823 24 67 0 0 chr4 69152377 69152422 -133175925 + AT_rich Low_complexity Low_complexity 1 45 0 36 40 0 0 chr4 69155190 69155240 -133173107 + AT_rich Low_complexity Low_complexity 1 50 0 2029 141 3 0 chr4 69155245 69155542 -133172805 - AluSx SINE Alu -12 300 3 549 304 86 9 chr4 69155639 69155859 -133172488 - MIR SINE MIR -2 260 24 861 346 55 23 chr4 69156272 69156969 -133171378 - L2 LINE L2 0 3313 2592 1215 231 63 82 chr4 69156982 69157438 -133170909 - MLT1D LTR MaLR 0 505 73 1170 205 169 19 chr4 69157450 69157869 -133170478 + LTR54B LTR ERV1 15 496 -2 364 182 11 80 chr4 69157869 69157948 -133170399 - MLT1D LTR MaLR -553 73 1 249 339 54 0 chr4 69157978 69158090 -133170257 - L2 LINE L2 -753 2561 2444 225 269 30 0 chr4 69158113 69158180 -133170167 - L2 LINE L2 -1014 2300 2232 1936 147 0 3 chr4 69159812 69160119 -133168228 - AluSq SINE Alu -7 306 1 227 321 124 52 chr4 69160336 69160529 -133167818 - MIR SINE MIR -22 240 34 189 74 0 0 chr4 69160873 69160900 -133167447 + (A)n Simple_repeat Simple_repeat 1 27 0 1757 133 0 0 chr4 69160900 69161181 -133167166 + AluSg SINE Alu 36 316 0 26 50 0 0 chr4 69161573 69161613 -133166734 + AT_rich Low_complexity Low_complexity 1 40 0 23 54 0 0 chr4 69161887 69161924 -133166423 + AT_rich Low_complexity Low_complexity 1 37 0 1787 106 16 81 chr4 69162681 69162848 -133165499 - AluSg SINE Alu -8 302 164 237 33 0 0 chr4 69162848 69162878 -133165469 + (TTTAG)n Simple_repeat Simple_repeat 1 30 0 1787 106 16 81 chr4 69162878 69163031 -133165316 - AluSg SINE Alu -146 164 3 25 83 0 0 chr4 69163306 69163366 -133164981 + AT_rich Low_complexity Low_complexity 1 60 0 1811 327 81 33 chr4 69163731 69164107 -133164240 - L2 LINE L2 -4 3309 2952 654 213 190 6 chr4 69164107 69164281 -133164066 + MER6B DNA MER2_type 4 209 -1 1811 327 81 33 chr4 69164281 69165032 -133163315 - L2 LINE L2 -361 2952 2128 2223 128 0 0 chr4 69165044 69165356 -133162991 - AluSx SINE Alu 0 312 1 35442 41 31 2 chr4 69165390 69169833 -133158514 + L1P LINE L1 25 4596 -1550 15344 28 0 0 chr4 69169933 69172525 -133155822 + L1PA2 LINE L1 3558 6154 -1 577 300 55 23 chr4 69172568 69172788 -133155559 - L2 LINE L2 -1248 2066 1840 1605 208 112 12 chr4 69172788 69173206 -133155141 + MLT1C LTR MaLR 1 460 -7 323 336 78 34 chr4 69173517 69173785 -133154562 + L2 LINE L2 2811 3090 -223 304 239 104 22 chr4 69173924 69174058 -133154289 - L1MCa LINE L1 -4349 2077 1933 311 188 71 0 chr4 69174062 69174174 -133154173 + (TA)n Simple_repeat Simple_repeat 1 120 0 309 26 0 0 chr4 69174218 69174256 -133154091 + (CA)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr4 69174849 69174871 -133153476 + AT_rich Low_complexity Low_complexity 1 22 0 634 318 54 30 chr4 69175890 69176223 -133152124 - L2 LINE L2 -24 3289 2949 203 143 0 24 chr4 69176559 69176601 -133151746 + (GAA)n Simple_repeat Simple_repeat 2 42 0 25 95 0 0 chr4 69177991 69178065 -133150282 + AT_rich Low_complexity Low_complexity 1 74 0 21 36 0 0 chr4 69178627 69178655 -133149692 + AT_rich Low_complexity Low_complexity 1 28 0 269 123 18 70 chr4 69178901 69178958 -133149389 - MLT1H LTR MaLR -7 542 489 2954 235 25 63 chr4 69179079 69179299 -133149048 + L1MD2 LINE L1 5346 5573 -786 1327 186 42 39 chr4 69179299 69179610 -133148737 - AluJb SINE Alu 0 312 1 2954 235 25 63 chr4 69179610 69180418 -133147929 + L1MD2 LINE L1 5573 6335 -24 25 75 0 0 chr4 69180418 69180471 -133147876 + AT_rich Low_complexity Low_complexity 1 53 0 28 109 0 0 chr4 69180677 69180796 -133147551 + AT_rich Low_complexity Low_complexity 1 119 0 1684 139 59 3 chr4 69180796 69181083 -133147264 - Tigger3b DNA MER2_type 0 1231 929 5381 128 16 6 chr4 69181089 69181928 -133146419 - L1PA15 LINE L1 0 6165 5319 943 251 0 0 chr4 69181921 69182144 -133146203 + L1P LINE L1 5060 5282 -864 * 1976 118 39 22 chr4 69182144 69182499 -133145848 - Tigger3b DNA MER2_type -273 958 598 572 233 17 0 chr4 69182502 69182622 -133145725 - FLAM_C SINE Alu -13 130 9 2138 151 97 39 chr4 69182629 69183093 -133145254 - Tigger3b DNA MER2_type -649 582 92 371 246 63 42 chr4 69183105 69183247 -133145100 - MIR SINE MIR -30 232 88 1449 240 72 0 chr4 69183509 69183830 -133144517 + Tigger7 DNA MER2_type 1 344 -389 391 71 0 0 chr4 69183825 69183881 -133144466 + Tigger7 DNA MER2_type 2339 2394 -93 * 7245 182 52 73 chr4 69183886 69185621 -133142726 - MER52A LTR ERV1 0 1755 56 490 231 0 0 chr4 69185938 69186029 -133142318 + Tigger7 DNA MER2_type 2397 2487 0 233 298 24 12 chr4 69186084 69186168 -133142179 + CT-rich Low_complexity Low_complexity 3 87 0 2058 237 39 37 chr4 69186328 69186839 -133141508 + MLT2B3 LTR ERVL 8 519 -35 320 125 36 0 chr4 69186857 69186913 -133141434 + Ricksha DNA DNA 848 905 -2341 883 275 27 0 chr4 69187745 69187967 -133140380 + MIR SINE MIR 3 230 -32 207 139 0 0 chr4 69188681 69188717 -133139630 + (TG)n Simple_repeat Simple_repeat 2 37 0 329 258 16 0 chr4 69188739 69188867 -133139480 + (TA)n Simple_repeat Simple_repeat 2 131 0 350 277 62 15 chr4 69189702 69189832 -133138515 + MER103 DNA DNA 13 148 -18 7640 20 2 1 chr4 69189924 69191162 -133137185 + L1PA2 LINE L1 4917 6155 0 23 0 0 0 chr4 69191167 69191190 -133137157 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 69192411 69192434 -133135913 + AT_rich Low_complexity Low_complexity 1 23 0 204 200 0 0 chr4 69192841 69192886 -133135461 + (TA)n Simple_repeat Simple_repeat 2 46 0 1233 203 74 37 chr4 69192943 69193268 -133135079 + MER44D DNA MER2_type 2 608 -1 249 33 0 0 chr4 69193470 69193500 -133134847 + (CA)n Simple_repeat Simple_repeat 2 31 0 207 0 0 0 chr4 69193499 69193522 -133134825 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 364 270 48 48 chr4 69194616 69194791 -133133556 - L1MC/D LINE L1 -2325 5483 5305 1892 151 3 3 chr4 69194791 69195103 -133133244 - AluSq SINE Alu 0 312 1 364 270 48 48 chr4 69195103 69195115 -133133232 - L1MC/D LINE L1 -2502 5306 5295 1870 206 6 6 chr4 69196312 69196677 -133131670 - MLT1A1 LTR MaLR 0 365 1 275 294 30 20 chr4 69197473 69197670 -133130677 + L1ME4a LINE L1 3739 3937 -2209 351 370 50 20 chr4 69197924 69198427 -133129920 + L1ME4a LINE L1 5309 5826 -295 236 203 38 25 chr4 69198510 69198589 -133129758 + (CATATA)n Simple_repeat Simple_repeat 4 83 0 5377 191 12 26 chr4 69199294 69201517 -133126830 + L1PA16 LINE L1 3982 6166 0 317 244 73 16 chr4 69201712 69201835 -133126512 + L1ME4a LINE L1 5986 6115 -6 21 0 0 0 chr4 69202096 69202117 -133126230 + AT_rich Low_complexity Low_complexity 1 21 0 1679 159 86 3 chr4 69202315 69202616 -133125731 + MER21B LTR ERV1 178 503 -360 25 51 0 0 chr4 69202618 69202657 -133125690 + AT_rich Low_complexity Low_complexity 1 39 0 2009 247 38 8 chr4 69203682 69204184 -133124163 - LTR40a LTR ERVL -2 517 1 260 26 0 26 chr4 69204258 69204296 -133124051 + (TG)n Simple_repeat Simple_repeat 1 37 0 35 71 0 0 chr4 69204646 69204716 -133123631 + AT_rich Low_complexity Low_complexity 1 70 0 310 360 65 20 chr4 69204884 69205037 -133123310 + L1M3c LINE L1 958 1117 -5981 511 252 59 73 chr4 69205800 69206468 -133121879 + L1M3c LINE L1 1613 2314 -4784 5234 239 57 42 chr4 69207657 69208239 -133120108 + L1M1 LINE L1 2377 2949 -4616 1857 168 7 0 chr4 69208239 69208531 -133119816 + AluSx SINE Alu 1 294 -18 994 32 0 59 chr4 69208531 69208718 -133119629 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 5234 239 57 42 chr4 69208718 69210862 -133117485 + L1M1 LINE L1 2948 5152 -2413 25 75 0 0 chr4 69211284 69211337 -133117010 + AT_rich Low_complexity Low_complexity 1 53 0 1927 115 4 0 chr4 69211575 69211845 -133116502 - AluSq SINE Alu -13 300 30 562 327 135 16 chr4 69212180 69212611 -133115736 - L2 LINE L2 -943 2371 1890 2140 95 0 3 chr4 69212888 69213202 -133115145 - AluSq SINE Alu 0 314 2 294 241 46 19 chr4 69214421 69214529 -133113818 + L1ME4a LINE L1 5974 6084 -37 822 251 28 19 chr4 69215910 69216121 -133112226 - MIR SINE MIR -10 252 40 802 255 57 0 chr4 69216480 69216692 -133111655 + MIR SINE MIR 18 241 -21 237 380 63 32 chr4 69218308 69218466 -133109881 + MER91A DNA MER1_type 2 164 -32 393 241 102 0 chr4 69218476 69218584 -133109763 + MIR SINE MIR 79 197 -65 207 0 0 0 chr4 69219404 69219427 -133108920 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2049 123 3 10 chr4 69221243 69221545 -133106802 - AluSx SINE Alu -12 300 1 346 157 22 135 chr4 69221947 69222036 -133106311 - Charlie3 DNA MER1_type -4 2706 2628 198 250 0 0 chr4 69225107 69225147 -133103200 - MIR SINE MIR -10 252 213 38 22 0 0 chr4 69225386 69225431 -133102916 + AT_rich Low_complexity Low_complexity 1 45 0 381 22 0 0 chr4 69225655 69225701 -133102646 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 1188 258 17 17 chr4 69225856 69226143 -133102204 + AluJo SINE Alu 2 288 -14 369 0 0 0 chr4 69226269 69226310 -133102037 + (CA)n Simple_repeat Simple_repeat 2 42 0 773 260 97 39 chr4 69226414 69226720 -133101627 + MLT2C2 LTR ERVL 83 415 -49 633 49 0 0 chr4 69226720 69226801 -133101546 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 773 260 97 39 chr4 69226801 69226855 -133101492 + MLT2C2 LTR ERVL 415 464 0 265 341 8 0 chr4 69226888 69227011 -133101336 + (TA)n Simple_repeat Simple_repeat 2 125 0 226 354 55 8 chr4 69227777 69227904 -133100443 - MIR SINE MIR -102 160 28 555 269 0 15 chr4 69227943 69228073 -133100274 + L2 LINE L2 3179 3306 -7 245 173 0 3 chr4 69228553 69228601 -133099746 - MLT2C1 LTR ERVL -1 413 350 226 191 59 15 chr4 69228629 69228697 -133099650 - L1MCa LINE L1 -4361 2065 1995 * 227 256 98 0 chr4 69228647 69228729 -133099618 + L1MC4 LINE L1 6614 6703 -1339 * 262 219 31 73 chr4 69228701 69228797 -133099550 - L1MC4 LINE L1 -1339 6703 6612 1584 249 50 52 chr4 69228828 69229329 -133099018 - MLT2B1 LTR ERVL -20 500 1 246 143 0 0 chr4 69229880 69229929 -133098418 + (TG)n Simple_repeat Simple_repeat 2 50 0 6876 200 119 9 chr4 69231067 69232640 -133095707 - MER52A LTR ERV1 -9 1746 1 1558 207 104 32 chr4 69232717 69233122 -133095225 - Tigger2a DNA MER2_type 0 434 1 1401 235 56 42 chr4 69233361 69233486 -133094861 + MLT2B3 LTR ERVL 152 274 -280 2143 137 0 0 chr4 69233486 69233793 -133094554 - AluSg SINE Alu -3 307 1 1401 235 56 42 chr4 69233793 69234025 -133094322 + MLT2B3 LTR ERVL 274 514 -40 366 147 0 0 chr4 69234025 69234093 -133094254 + (TATG)n Simple_repeat Simple_repeat 2 69 0 246 160 0 40 chr4 69234101 69234151 -133094196 + MLT2B3 LTR ERVL 507 554 0 310 293 0 0 chr4 69234218 69234300 -133094047 + MER5A DNA MER1_type 10 91 -98 1509 278 66 43 chr4 69234808 69235421 -133092926 + HERVL40 LTR ERVL 2036 2345 -692 886 254 165 57 chr4 69236048 69236488 -133091859 + MLT1D LTR MaLR 8 654 0 438 286 30 30 chr4 69236750 69236918 -133091429 + HERVL40 LTR ERVL 2783 2950 -87 804 215 13 0 chr4 69236920 69237069 -133091278 + HERVL40 LTR ERVL 5371 5521 -9 1377 264 77 36 chr4 69237078 69237574 -133090773 + LTR40a LTR ERVL 1 516 -3 1455 172 15 120 chr4 69237780 69238188 -133090159 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr4 69238390 69238413 -133089934 + AT_rich Low_complexity Low_complexity 1 23 0 1611 253 138 26 chr4 69238731 69239269 -133089078 - MLT1E2 LTR MaLR 0 626 29 24 53 0 0 chr4 69239872 69239910 -133088437 + AT_rich Low_complexity Low_complexity 1 38 0 27 29 0 0 chr4 69240347 69240381 -133087966 + AT_rich Low_complexity Low_complexity 1 34 0 823 106 8 0 chr4 69241089 69241212 -133087135 - L1PA13 LINE L1 -360 5808 5685 2144 88 67 0 chr4 69241212 69241537 -133086810 + L1PA13 LINE L1 5811 6160 -3 1953 120 4 4 chr4 69241589 69241865 -133086482 + AluSc SINE Alu 1 276 -33 378 57 0 0 chr4 69241867 69241920 -133086427 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 805 157 0 0 chr4 69242173 69242307 -133086040 + AluSc SINE Alu 168 301 -8 617 298 32 0 chr4 69244581 69244769 -133083578 - MIR SINE MIR -3 259 66 959 315 36 34 chr4 69245287 69245932 -133082415 - MER20B DNA MER1_type -76 707 62 222 256 306 12 chr4 69245947 69246107 -133082240 - L2 LINE L2 -1782 1532 1326 22 0 0 0 chr4 69246528 69246550 -133081797 + AT_rich Low_complexity Low_complexity 1 22 0 206 347 58 16 chr4 69246844 69246965 -133081382 - L2 LINE L2 -2032 1282 1157 663 314 160 21 chr4 69247000 69247388 -133080959 - LTR33 LTR ERVL -54 467 26 360 289 79 47 chr4 69247391 69247581 -133080766 - L2 LINE L2 -3080 234 39 22 0 0 0 chr4 69247727 69247749 -133080598 + AT_rich Low_complexity Low_complexity 1 22 0 536 257 76 12 chr4 69247774 69247945 -133080402 - MIR SINE MIR -32 230 49 23 78 0 0 chr4 69248042 69248093 -133080254 + AT_rich Low_complexity Low_complexity 1 51 0 306 338 113 31 chr4 69248182 69248404 -133079943 + MIR SINE MIR 14 253 -9 382 253 0 0 chr4 69248423 69248510 -133079837 - L2 LINE L2 -2622 692 606 194 128 26 0 chr4 69248844 69248883 -133079464 + (TA)n Simple_repeat Simple_repeat 2 41 0 24 53 0 0 chr4 69249911 69249949 -133078398 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr4 69250299 69250323 -133078024 + AT_rich Low_complexity Low_complexity 1 24 0 1042 279 78 34 chr4 69250342 69250993 -133077354 - L1ME4a LINE L1 -48 6073 5376 33 25 0 0 chr4 69251744 69251784 -133076563 + AT_rich Low_complexity Low_complexity 1 40 0 799 318 77 43 chr4 69252031 69252906 -133075441 + HAL1 LINE L1 1602 2505 -2 31 44 0 0 chr4 69253781 69253826 -133074521 + AT_rich Low_complexity Low_complexity 1 45 0 2010 143 10 0 chr4 69253837 69254137 -133074210 + AluSq SINE Alu 1 303 -10 24 53 0 0 chr4 69254683 69254721 -133073626 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr4 69254845 69254867 -133073480 + AT_rich Low_complexity Low_complexity 1 22 0 1029 224 60 15 chr4 69255082 69255350 -133072997 + MLT2D LTR ERVL 1 280 -134 11552 193 16 21 chr4 69255361 69257582 -133070765 + ERVL-D LTR ERVL 3207 5416 -348 370 145 16 0 chr4 69257591 69257653 -133070694 + ERVL-D LTR ERVL 5695 5757 -7 1697 193 61 15 chr4 69257653 69258046 -133070301 + MLT2D LTR ERVL 1 411 -3 4885 181 29 9 chr4 69258635 69259898 -133068449 + L1MC1 LINE L1 4869 6160 -173 180 0 0 0 chr4 69259899 69259919 -133068428 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 1569 201 41 9 chr4 69259919 69260257 -133068090 - MLT1A1 LTR MaLR -16 349 1 314 236 91 55 chr4 69260257 69260422 -133067925 + L1MC2 LINE L1 6158 6328 -16 225 316 0 13 chr4 69260746 69260825 -133067522 + L1MEd LINE L1 1151 1228 -4891 11353 44 4 21 chr4 69261166 69261284 -133067063 - L1PA5 LINE L1 -2 6152 6034 2279 74 0 7 chr4 69261284 69261580 -133066767 - AluY SINE Alu -17 294 1 11353 44 4 21 chr4 69261580 69263707 -133064640 - L1PA5 LINE L1 -120 6034 3950 330 138 0 0 chr4 69263901 69263959 -133064388 + (CA)n Simple_repeat Simple_repeat 1 58 0 250 287 107 25 chr4 69264899 69265021 -133063326 - L2 LINE L2 -497 2817 2686 182 298 0 0 chr4 69265170 69265217 -133063130 - MER5A DNA MER1_type -6 183 137 25 51 0 0 chr4 69266530 69266569 -133061778 + AT_rich Low_complexity Low_complexity 1 39 0 283 269 10 67 chr4 69266967 69267071 -133061276 + LTR37A LTR ERV1 116 213 -213 512 199 22 119 chr4 69267122 69267348 -133060999 + LTR37A LTR ERV1 223 426 0 1600 195 17 10 chr4 69267460 69267758 -133060589 + AluSx SINE Alu 1 300 -12 367 276 18 82 chr4 69268209 69268379 -133059968 - L2 LINE L2 -1637 1677 1519 1537 202 13 19 chr4 69268437 69268801 -133059546 - AluJb SINE Alu 0 362 1 220 333 0 0 chr4 69268805 69268874 -133059473 - L2 LINE L2 -1879 1435 1367 21 0 0 0 chr4 69270458 69270479 -133057868 + AT_rich Low_complexity Low_complexity 1 21 0 255 125 0 0 chr4 69270629 69270669 -133057678 - MADE1 DNA Mariner 0 80 41 22 56 0 0 chr4 69271071 69271107 -133057240 + AT_rich Low_complexity Low_complexity 1 36 0 404 270 0 0 chr4 69272851 69272940 -133055407 - MER5A DNA MER1_type -83 106 18 306 210 0 0 chr4 69273066 69273128 -133055219 + L1MC4 LINE L1 6641 6702 -1340 22 56 0 0 chr4 69273135 69273171 -133055176 + AT_rich Low_complexity Low_complexity 1 36 0 443 81 0 14 chr4 69273211 69273285 -133055062 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 221 83 28 0 chr4 69273316 69273352 -133054995 + (TA)n Simple_repeat Simple_repeat 2 38 0 1375 229 98 12 chr4 69273359 69273696 -133054651 - MLT2D LTR ERVL -48 366 1 1394 200 27 39 chr4 69273714 69274049 -133054298 + MER58B DNA MER1_type 1 331 -10 710 288 12 0 chr4 69274136 69274306 -133054041 - MER5A DNA MER1_type -1 188 17 23 54 0 0 chr4 69275963 69276000 -133052347 + AT_rich Low_complexity Low_complexity 1 37 0 328 336 115 0 chr4 69276227 69276340 -133052007 + MIR SINE MIR 13 138 -124 28 29 0 0 chr4 69276581 69276616 -133051731 + AT_rich Low_complexity Low_complexity 1 35 0 1980 147 59 8 chr4 69276796 69277150 -133051197 - THE1C LTR MaLR -3 372 1 42427 38 21 1 chr4 69278131 69284155 -133044192 - L1PA2 LINE L1 -5 6150 4 200 368 0 23 chr4 69285197 69285284 -133043063 - L2 LINE L2 0 3313 3229 320 318 211 29 chr4 69285498 69285806 -133042541 - L2 LINE L2 -21 3292 2929 1219 308 198 36 chr4 69285940 69286986 -133041361 - L2 LINE L2 -559 2755 1541 246 376 30 6 chr4 69287045 69287210 -133041137 - L2 LINE L2 -2451 863 695 1216 223 60 19 chr4 69287518 69287787 -133040560 + Tigger7 DNA MER2_type 4 283 -450 609 81 0 12 chr4 69287781 69287867 -133040480 + Tigger7 DNA MER2_type 2277 2361 -226 * 2081 218 105 41 chr4 69287878 69288394 -133039953 + MER50 LTR ERV1 10 581 -153 2174 106 3 3 chr4 69288394 69288687 -133039660 - AluSg SINE Alu -17 293 1 2081 218 105 41 chr4 69288687 69288849 -133039498 + MER50 LTR ERV1 581 731 -3 770 126 0 252 chr4 69288849 69288999 -133039348 + Tigger7 DNA MER2_type 2256 2290 -197 2220 107 0 0 chr4 69288999 69289290 -133039057 - AluSg SINE Alu -17 293 3 770 126 0 252 chr4 69289290 69289448 -133038899 + Tigger7 DNA MER2_type 2290 2486 -1 305 320 132 46 chr4 69289459 69289678 -133038669 - L2 LINE L2 -2763 551 314 * 462 324 51 0 chr4 69289671 69289847 -133038500 + MIR SINE MIR 50 234 -28 2112 215 122 28 chr4 69289887 69290558 -133037789 - MER50 LTR ERV1 0 734 1 28 29 0 0 chr4 69291273 69291308 -133037039 + AT_rich Low_complexity Low_complexity 1 35 0 827 264 58 4 chr4 69291338 69291596 -133036751 + MER63 DNA MER1_type 672 943 -117 304 237 0 0 chr4 69291635 69291732 -133036615 + MER63 DNA MER1_type 912 1008 -54 288 258 30 61 chr4 69291976 69292108 -133036239 + LTR16C LTR ERVL 362 489 -2 486 333 58 51 chr4 69293875 69294289 -133034058 + ERVL LTR ERVL 4417 4836 -928 1945 167 26 26 chr4 69294289 69294678 -133033669 + MLT1B LTR MaLR 1 389 -1 486 333 58 51 chr4 69294678 69294731 -133033616 + ERVL LTR ERVL 4836 4887 -877 321 365 49 32 chr4 69294834 69295119 -133033228 + ERVL LTR ERVL 5023 5312 -452 1965 263 67 99 chr4 69295232 69296217 -133032130 - MER45C DNA AcHobo 0 953 1 316 259 122 38 chr4 69296630 69296761 -133031586 + LTR16C LTR ERVL 348 489 -2 1853 65 0 4 chr4 69296990 69297220 -133031127 - AluY SINE Alu -16 295 67 1027 185 14 28 chr4 69298035 69298246 -133030101 + MER3 DNA MER1_type 1 208 -1 2358 94 3 0 chr4 69298671 69298968 -133029379 + AluSp SINE Alu 1 298 -15 620 318 75 42 chr4 69299465 69299849 -133028498 - L2 LINE L2 -1 3312 2916 528 223 31 15 chr4 69299882 69300012 -133028335 - MIR SINE MIR -110 152 21 265 256 0 37 chr4 69301010 69301092 -133027255 + (TATATG)n Simple_repeat Simple_repeat 3 81 0 30 45 0 0 chr4 69302228 69302272 -133026075 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr4 69302441 69302464 -133025883 + AT_rich Low_complexity Low_complexity 1 23 0 209 387 59 32 chr4 69302987 69303359 -133024988 - L2 LINE L2 -946 2368 1987 741 257 101 35 chr4 69303466 69304236 -133024111 + L1MC5 LINE L1 7056 7911 -50 206 355 169 17 chr4 69304367 69304539 -133023808 - MIR SINE MIR -1 261 64 262 358 37 32 chr4 69304746 69304933 -133023414 + MIR SINE MIR 75 262 0 206 294 70 84 chr4 69305016 69305159 -133023188 + MIR SINE MIR 67 207 -55 25 31 0 0 chr4 69306262 69306294 -133022053 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr4 69306977 69307007 -133021340 + AT_rich Low_complexity Low_complexity 1 30 0 1815 153 39 12 chr4 69307046 69307380 -133020967 + MSTA LTR MaLR 2 344 -84 406 280 6 6 chr4 69307823 69307991 -133020356 + HAL1b LINE L1 941 1108 -240 226 313 12 12 chr4 69308547 69308630 -133019717 + MIR SINE MIR 79 161 -101 27 49 0 0 chr4 69308788 69308829 -133019518 + AT_rich Low_complexity Low_complexity 1 41 0 294 50 0 0 chr4 69310218 69310258 -133018089 + (CAT)n Simple_repeat Simple_repeat 3 42 0 198 191 0 0 chr4 69312709 69312751 -133015596 + (TA)n Simple_repeat Simple_repeat 2 43 0 703 195 38 110 chr4 69315657 69315893 -133012454 - MER20 DNA MER1_type 0 219 1 355 110 0 27 chr4 69315895 69315968 -133012379 + (TA)n Simple_repeat Simple_repeat 2 72 0 299 331 53 41 chr4 69316063 69316232 -133012115 - MIR SINE MIR -85 177 7 25 0 0 0 chr4 69319539 69319564 -133008783 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 69320459 69320481 -133007866 + AT_rich Low_complexity Low_complexity 1 22 0 1306 183 82 50 chr4 69322310 69322627 -133005720 + L1MC1 LINE L1 6005 6331 -2 370 322 171 41 chr4 69323157 69323403 -133004944 + L2 LINE L2 1789 2002 -1312 489 71 0 0 chr4 69323403 69323473 -133004874 + (TG)n Simple_repeat Simple_repeat 1 70 0 370 322 171 41 chr4 69323473 69323999 -133004348 + L2 LINE L2 2002 2661 -653 446 288 7 27 chr4 69324039 69324185 -133004162 + L2 LINE L2 3171 3313 0 836 305 98 15 chr4 69324222 69324550 -133003797 - L2 LINE L2 -2410 904 550 21 0 0 0 chr4 69324671 69324692 -133003655 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 69326777 69326806 -133001541 + AT_rich Low_complexity Low_complexity 1 29 0 1662 193 14 14 chr4 69326987 69327339 -133001008 - L1MA5 LINE L1 -13 6287 5936 194 297 33 33 chr4 69327576 69327667 -133000680 - L2 LINE L2 -1002 2312 2222 24 91 0 0 chr4 69327909 69327975 -133000372 + AT_rich Low_complexity Low_complexity 1 66 0 22 70 0 0 chr4 69328566 69328609 -132999738 + AT_rich Low_complexity Low_complexity 1 43 0 3103 158 48 19 chr4 69329308 69329889 -132998458 - MER6A DNA MER2_type -3 602 5 383 256 165 28 chr4 69329903 69330079 -132998268 + MER63A DNA MER1_type 8 207 -3 344 365 6 31 chr4 69330669 69330828 -132997519 + LTR16B LTR ERVL 10 164 -300 282 291 80 63 chr4 69331086 69331261 -132997086 - MIR SINE MIR -65 197 20 184 161 62 0 chr4 69331440 69331521 -132996826 + (TA)n Simple_repeat Simple_repeat 2 87 0 278 356 0 44 chr4 69331525 69331660 -132996687 + L3 LINE CR1 1396 1524 -53 229 309 32 11 chr4 69331919 69332013 -132996334 - MIR3 SINE MIR -1 207 112 184 194 0 32 chr4 69332431 69332493 -132995854 + (TA)n Simple_repeat Simple_repeat 2 61 0 209 156 11 44 chr4 69332522 69332612 -132995735 + (CATATA)n Simple_repeat Simple_repeat 2 88 0 208 269 15 0 chr4 69333868 69333935 -132994412 + A-rich Low_complexity Low_complexity 3 70 0 200 276 194 10 chr4 69334374 69334472 -132993875 + L3 LINE CR1 706 821 -756 23 0 0 0 chr4 69334735 69334758 -132993589 + AT_rich Low_complexity Low_complexity 1 23 0 375 312 101 42 chr4 69334823 69335012 -132993335 + MIR SINE MIR 6 205 -57 2180 62 33 0 chr4 69335657 69335956 -132992391 - AluY SINE Alu 0 308 1 234 224 45 0 chr4 69335988 69336055 -132992292 - L1M2 LINE L1 -860 5431 5362 394 276 113 36 chr4 69336172 69336447 -132991900 - L1M4 LINE L1 -913 5233 4938 2116 56 0 3 chr4 69336465 69336751 -132991596 + L1P LINE L1 5084 5368 -778 295 218 0 0 chr4 69337156 69337211 -132991136 + MIR SINE MIR 202 256 -6 234 70 0 0 chr4 69338548 69338591 -132989756 + LTR66 LTR ERVL 399 441 -169 249 264 0 0 chr4 69338593 69338665 -132989682 + (TATATG)n Simple_repeat Simple_repeat 1 72 0 320 322 0 0 chr4 69338866 69338956 -132989391 - L1MC4 LINE L1 -1339 6703 6614 2086 141 0 0 chr4 69338963 69339262 -132989085 - AluSx SINE Alu -12 300 2 218 173 0 19 chr4 69341145 69341197 -132987150 + (TA)n Simple_repeat Simple_repeat 1 51 0 226 219 0 0 chr4 69341395 69341436 -132986911 + polypyrimidine Low_complexity Low_complexity 2 42 0 230 239 0 54 chr4 69342853 69342945 -132985402 + T-rich Low_complexity Low_complexity 5 91 0 151 31 0 0 chr4 69343347 69343540 -132984807 + AT_rich Low_complexity Low_complexity 1 193 0 270 0 0 0 chr4 69343651 69343681 -132984666 + (CA)n Simple_repeat Simple_repeat 2 31 0 832 279 9 13 chr4 69344109 69344335 -132984012 + MIR SINE MIR 5 229 -33 230 291 147 44 chr4 69347294 69347514 -132980833 - MIR SINE MIR -13 249 5 1062 207 4 23 chr4 69347738 69347999 -132980348 + L1MB1 LINE L1 5913 6168 0 389 276 38 0 chr4 69348159 69348264 -132980083 + MER5A DNA MER1_type 4 112 -77 1587 306 94 11 chr4 69349568 69350510 -132977837 + L2 LINE L2 2282 3313 0 455 333 68 17 chr4 69350563 69350797 -132977550 + MIR SINE MIR 15 260 -2 23 33 0 0 chr4 69350868 69350898 -132977449 + AT_rich Low_complexity Low_complexity 1 30 0 323 252 140 0 chr4 69351167 69351274 -132977073 - L2 LINE L2 0 3313 3192 238 250 154 10 chr4 69351313 69351417 -132976930 - L2 LINE L2 0 3313 3195 406 362 81 4 chr4 69353357 69353592 -132974755 - MIR SINE MIR 0 262 10 315 0 0 0 chr4 69355446 69355481 -132972866 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 324 0 0 0 chr4 69355797 69355833 -132972514 + (TA)n Simple_repeat Simple_repeat 1 36 0 240 287 100 10 chr4 69356654 69356800 -132971547 + MIR SINE MIR 38 196 -66 21 107 0 0 chr4 69357209 69357293 -132971054 + AT_rich Low_complexity Low_complexity 1 84 0 21 0 0 0 chr4 69357870 69357891 -132970456 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 69358854 69358882 -132969465 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 69359448 69359469 -132968878 + AT_rich Low_complexity Low_complexity 1 21 0 2038 127 0 3 chr4 69359829 69360129 -132968218 + AluSg SINE Alu 1 299 -11 22 0 0 0 chr4 69361456 69361478 -132966869 + AT_rich Low_complexity Low_complexity 1 22 0 212 240 0 0 chr4 69365442 69365492 -132962855 + (CA)n Simple_repeat Simple_repeat 1 50 0 339 25 0 0 chr4 69365918 69365958 -132962389 + (CA)n Simple_repeat Simple_repeat 2 41 0 799 223 99 0 chr4 69368664 69368866 -132959481 + MER58A DNA MER1_type 2 223 -1 226 204 0 0 chr4 69368904 69368948 -132959399 + CT-rich Low_complexity Low_complexity 3 46 0 23 68 0 0 chr4 69369346 69369390 -132958957 + AT_rich Low_complexity Low_complexity 1 44 0 216 67 0 0 chr4 69369415 69369445 -132958902 + (CA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr4 69369546 69369567 -132958780 + AT_rich Low_complexity Low_complexity 1 21 0 358 302 47 35 chr4 69369609 69369781 -132958566 + MIR SINE MIR 89 262 0 373 382 79 12 chr4 69370696 69371026 -132957321 + L1ME LINE L1 5273 5624 -497 268 309 186 29 chr4 69371036 69371246 -132957101 + MIR SINE MIR 10 252 -10 25 0 0 0 chr4 69371428 69371453 -132956894 + AT_rich Low_complexity Low_complexity 1 25 0 783 304 4 12 chr4 69371818 69372061 -132956286 + MLT1A1 LTR MaLR 19 259 -106 551 254 40 12 chr4 69372784 69372957 -132955390 + MER5B DNA MER1_type 1 178 0 297 195 32 60 chr4 69373159 69373344 -132955003 + (TA)n Simple_repeat Simple_repeat 1 180 0 255 61 0 0 chr4 69373364 69373397 -132954950 + (CA)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr4 69374090 69374112 -132954235 + AT_rich Low_complexity Low_complexity 1 22 0 1497 219 85 11 chr4 69374498 69374864 -132953483 + MER89 LTR ERV1 167 559 0 23 0 0 0 chr4 69375755 69375778 -132952569 + AT_rich Low_complexity Low_complexity 1 23 0 33 25 0 0 chr4 69375972 69376012 -132952335 + AT_rich Low_complexity Low_complexity 1 40 0 30 27 0 0 chr4 69376416 69376453 -132951894 + AT_rich Low_complexity Low_complexity 1 37 0 404 283 36 18 chr4 69376494 69376660 -132951687 + L1ME LINE L1 5502 5670 -451 6441 138 11 0 chr4 69377961 69379098 -132949249 - L1PA4 LINE L1 -1 6154 5018 1375 244 102 29 chr4 69380215 69380665 -132947682 + MER74B LTR ERVL 66 548 -74 364 222 67 11 chr4 69380587 69380677 -132947670 - MER88 LTR ERVL -291 173 79 * 1746 153 88 28 chr4 69381048 69381402 -132946945 - THE1C LTR MaLR 0 375 1 28 71 0 0 chr4 69382547 69382603 -132945744 + AT_rich Low_complexity Low_complexity 1 56 0 247 358 0 0 chr4 69383342 69383409 -132944938 + MLT1K LTR MaLR 84 150 -438 253 340 0 10 chr4 69383622 69383722 -132944625 + L2 LINE L2 2044 2142 -1172 276 253 35 11 chr4 69383867 69383954 -132944393 + MLT1K LTR MaLR 489 577 -11 343 356 38 0 chr4 69384731 69384863 -132943484 - L2 LINE L2 -289 3024 2888 209 262 148 33 chr4 69384865 69384987 -132943360 + MIR SINE MIR 122 257 -5 207 235 59 0 chr4 69385271 69385322 -132943025 + L2 LINE L2 3217 3270 -2 1027 240 161 23 chr4 69385999 69386400 -132941947 + MER52A LTR ERV1 2 542 -1213 6205 150 14 7 chr4 69386408 69387548 -132940799 + MER52A-int LTR ERV1 2082 3265 -3826 3302 117 43 8 chr4 69387540 69388051 -132940296 + MER52A-int LTR ERV1 6562 7090 -1 * 7292 212 102 24 chr4 69388052 69389680 -132938667 + MER52A LTR ERV1 1 1755 0 246 62 0 0 chr4 69391178 69391210 -132937137 + (TG)n Simple_repeat Simple_repeat 1 32 0 25 0 0 0 chr4 69391542 69391567 -132936780 + AT_rich Low_complexity Low_complexity 1 25 0 360 43 0 0 chr4 69392052 69392098 -132936249 + (GA)n Simple_repeat Simple_repeat 1 46 0 1819 164 42 33 chr4 69392098 69392457 -132935890 + THE1C LTR MaLR 6 367 -8 347 113 16 0 chr4 69393738 69393800 -132934547 + (TTTTA)n Simple_repeat Simple_repeat 2 64 0 207 138 69 0 chr4 69397808 69397866 -132930481 + T-rich Low_complexity Low_complexity 1 62 0 1347 185 0 34 chr4 69397905 69398170 -132930177 - AluJb SINE Alu -14 298 43 7311 21 1 1 chr4 69398628 69399521 -132928826 + L1PA3 LINE L1 5283 6175 0 3785 218 33 38 chr4 69399934 69400928 -132927419 + L1MD2 LINE L1 5370 6358 -1 198 0 0 0 chr4 69401183 69401205 -132927142 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 25 31 0 0 chr4 69401233 69401265 -132927082 + AT_rich Low_complexity Low_complexity 1 32 0 28 29 0 0 chr4 69401519 69401554 -132926793 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr4 69402054 69402085 -132926262 + AT_rich Low_complexity Low_complexity 1 31 0 1909 128 14 0 chr4 69402094 69402375 -132925972 + AluSp SINE Alu 1 285 -28 227 222 37 62 chr4 69402488 69402569 -132925778 + L2 LINE L2 3227 3305 -8 24 0 0 0 chr4 69403488 69403512 -132924835 + AT_rich Low_complexity Low_complexity 1 24 0 193 258 34 56 chr4 69405411 69405500 -132922847 + MIR SINE MIR 120 206 -56 24 53 0 0 chr4 69405517 69405555 -132922792 + AT_rich Low_complexity Low_complexity 1 38 0 255 319 129 0 chr4 69406408 69406524 -132921823 + MIR SINE MIR 53 183 -79 2296 95 3 9 chr4 69409016 69409331 -132919016 - AluSq SINE Alu 0 313 1 6687 107 15 0 chr4 69509955 69511715 -132816632 + L1PA7 LINE L1 4375 6153 -1 490 312 7 13 chr4 69512042 69512196 -132816151 - MIR SINE MIR -21 241 89 268 162 95 135 chr4 69512266 69512414 -132815933 + HsTC2 DNA Tc2 1757 1898 0 2148 89 0 0 chr4 69513504 69513774 -132814573 + AluSc SINE Alu 40 309 0 6965 113 11 0 chr4 69514361 69515351 -132812996 - L1P LINE L1 -5135 1011 11 10807 202 67 4 chr4 69515359 69516231 -132812116 - L1PA13 LINE L1 -4558 2229 1413 252 0 0 0 chr4 69516231 69516259 -132812088 + (CAG)n Simple_repeat Simple_repeat 3 30 0 10807 202 67 4 chr4 69516259 69517482 -132810865 - L1PA13 LINE L1 -5374 1413 2 524 280 0 0 chr4 69517824 69517956 -132810391 + L1MC4 LINE L1 6481 6612 -1430 573 232 77 10 chr4 69517960 69518167 -132810180 + L1ME3A LINE L1 5730 5950 -220 300 175 0 0 chr4 69518466 69518529 -132809818 + CT-rich Low_complexity Low_complexity 1 63 0 2093 135 17 0 chr4 69518529 69518825 -132809522 - AluSg SINE Alu -9 301 1 182 192 19 0 chr4 69518965 69519017 -132809330 + (TA)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr4 69519019 69519040 -132809307 + AT_rich Low_complexity Low_complexity 1 21 0 206 225 0 0 chr4 69519383 69519423 -132808924 + (CAT)n Simple_repeat Simple_repeat 2 41 0 2238 120 0 0 chr4 69520154 69520463 -132807884 + AluSx SINE Alu 1 309 -3 21 82 0 0 chr4 69520922 69520971 -132807376 + AT_rich Low_complexity Low_complexity 1 49 0 1446 324 14 5 chr4 69521362 69521791 -132806556 + LTR16A LTR ERVL 18 450 0 1778 153 6 6 chr4 69521943 69522256 -132806091 - AluSq SINE Alu 0 313 1 407 234 8 0 chr4 69523041 69523165 -132805182 + (TA)n Simple_repeat Simple_repeat 2 126 0 1727 238 38 5 chr4 69523248 69523618 -132804729 - MER74A LTR ERVL -55 503 122 688 257 54 61 chr4 69524215 69524613 -132803734 + L1M4c LINE L1 1541 1940 -4444 2344 168 39 7 chr4 69524613 69525054 -132803293 + MSTB2 LTR MaLR 1 455 -2 688 257 54 61 chr4 69525054 69525249 -132803098 + L1M4c LINE L1 1940 2135 -4249 330 26 0 0 chr4 69525249 69525288 -132803059 + (TG)n Simple_repeat Simple_repeat 1 39 0 688 257 54 61 chr4 69525288 69525410 -132802937 + L1M4c LINE L1 2135 2346 -4038 506 340 13 8 chr4 69525416 69525651 -132802696 + HERVL LTR ERVL 3812 4047 -1607 3324 209 21 25 chr4 69525664 69526522 -132801825 + L1MB7 LINE L1 5285 6139 -45 379 393 72 62 chr4 69526988 69527695 -132800652 - HAL1 LINE L1 -137 2370 1657 1809 218 16 66 chr4 69527749 69528118 -132800229 - MLT1C LTR MaLR -2 465 124 3051 142 96 41 chr4 69528118 69528733 -132799614 - MER39B LTR ERV1 -2 651 3 1809 218 16 66 chr4 69528733 69528850 -132799497 - MLT1C LTR MaLR -343 124 3 240 122 0 0 chr4 69528999 69529040 -132799307 + (T)n Simple_repeat Simple_repeat 1 41 0 396 311 17 28 chr4 69529316 69529493 -132798854 - MLT2C1 LTR ERVL -220 177 3 213 39 0 0 chr4 69529567 69529593 -132798754 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 964 167 6 44 chr4 69529593 69529773 -132798574 - U2 snRNA snRNA -15 173 1 337 354 56 14 chr4 69529780 69530065 -132798282 - HAL1 LINE L1 -1236 1271 975 3214 108 11 0 chr4 69530065 69530511 -132797836 + MLT2A2 LTR ERVL 3 453 0 37645 96 5 11 chr4 69530511 69532788 -132795559 + HERVL-A2-A2 LTR ERVL 1 2290 -3364 6322 115 35 23 chr4 69532788 69533846 -132794501 - MER11C LTR ERVK 0 1071 1 37645 96 5 11 chr4 69533846 69536622 -132791725 + HERVL-A2-A2 LTR ERVL 2290 5025 -629 2116 115 3 7 chr4 69536622 69536917 -132791430 + AluSx SINE Alu 6 299 -13 37645 96 5 11 chr4 69536917 69537058 -132791289 + HERVL-A2-A2 LTR ERVL 5025 5165 -489 1853 88 32 3 chr4 69537158 69537441 -132790906 + HERVL-A2-A2 LTR ERVL 5364 5654 0 3243 82 30 0 chr4 69537442 69537879 -132790468 + MLT2A2 LTR ERVL 2 451 -2 208 265 12 12 chr4 69537903 69537986 -132790361 + (TA)n Simple_repeat Simple_repeat 2 84 0 615 347 59 28 chr4 69538218 69538791 -132789556 - HAL1 LINE L1 -1799 708 118 531 252 58 19 chr4 69539481 69539636 -132788711 + MIR SINE MIR 17 177 -85 6129 260 40 20 chr4 69539640 69541771 -132786576 + L1MA9 LINE L1 572 2137 -4516 6228 199 63 35 chr4 69541774 69544135 -132784212 + L1MA9 LINE L1 4377 6829 -69 189 107 0 0 chr4 69544135 69544163 -132784184 + (TA)n Simple_repeat Simple_repeat 1 28 0 6228 199 63 35 chr4 69544163 69544196 -132784151 + L1MA9 LINE L1 6829 6860 -38 25 51 0 0 chr4 69544226 69544265 -132784082 + AT_rich Low_complexity Low_complexity 1 39 0 185 108 27 0 chr4 69544292 69544329 -132784018 + (TAG)n Simple_repeat Simple_repeat 1 38 0 1778 263 27 15 chr4 69545125 69545604 -132782743 + MLT1D LTR MaLR 21 505 0 253 294 15 0 chr4 69546430 69546498 -132781849 + L2 LINE L2 1917 1985 -1329 313 235 74 25 chr4 69546934 69547015 -132781332 - LTR33A LTR ERVL -388 135 51 2440 212 81 8 chr4 69547799 69548427 -132779920 - Tigger6a DNA MER2_type -91 992 319 200 371 0 10 chr4 69549057 69549154 -132779193 + MIR SINE MIR 24 119 -89 200 125 50 0 chr4 69549806 69549846 -132778501 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 3874 198 5 4 chr4 69551288 69552422 -132775925 - MER70A-int LTR ERVL -2239 2784 1619 2072 138 9 0 chr4 69552424 69552743 -132775604 - MER70A-int LTR ERVL -3847 1176 855 1411 229 24 0 chr4 69552738 69553096 -132775251 - MER70A-int LTR ERVL -4357 666 255 * 504 185 39 54 chr4 69553085 69553215 -132775132 - MER70A-int LTR ERVL -4895 128 1 * 2395 212 24 2 chr4 69553216 69553668 -132774679 - MER70A LTR ERVL -10 462 1 226 235 20 0 chr4 69553837 69553888 -132774459 + GA-rich Low_complexity Low_complexity 1 52 0 315 327 85 33 chr4 69555137 69555290 -132773057 + L1MEd LINE L1 596 756 -5363 375 41 0 0 chr4 69555431 69555480 -132772867 + (CA)n Simple_repeat Simple_repeat 2 50 0 277 163 105 12 chr4 69555779 69555865 -132772482 + L1MC4 LINE L1 6612 6705 -1337 387 0 0 0 chr4 69556590 69556633 -132771714 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 759 165 8 0 chr4 69556633 69556754 -132771593 - AluJo/FRAM SINE Alu -30 282 161 1196 187 5 5 chr4 69556755 69556958 -132771389 - AluJo SINE Alu -107 205 3 6526 168 48 43 chr4 69556958 69558171 -132770176 + MER41-int LTR ERV1 3385 4591 -2571 653 184 0 0 chr4 69558171 69558280 -132770067 - FLAM_C SINE Alu -21 122 14 6526 168 48 43 chr4 69558280 69558865 -132769482 + MER41-int LTR ERV1 4591 5831 -1331 25 51 0 0 chr4 69558996 69559035 -132769312 + AT_rich Low_complexity Low_complexity 1 39 0 2103 28 16 0 chr4 69559035 69559290 -132769057 + L1HS LINE L1 5897 6155 0 39 0 0 0 chr4 69559310 69559349 -132768998 + AT_rich Low_complexity Low_complexity 1 39 0 403 283 73 4 chr4 69559349 69559523 -132768824 + L1ME3 LINE L1 5961 6150 -20 236 387 58 6 chr4 69559640 69559813 -132768534 - MIR SINE MIR -75 187 6 214 227 0 0 chr4 69559817 69559861 -132768486 + MIR SINE MIR 210 253 -9 234 386 92 7 chr4 69559948 69560101 -132768246 + L2 LINE L2 3107 3272 0 2092 138 36 30 chr4 69560165 69560527 -132767820 + THE1B LTR MaLR 1 364 0 10070 117 57 7 chr4 69560527 69562032 -132766315 + THE1B-int LTR MaLR 1 1580 0 2160 127 36 30 chr4 69562032 69562394 -132765953 + THE1B LTR MaLR 1 364 0 2136 126 0 0 chr4 69562534 69562836 -132765511 + AluSg SINE Alu 1 302 -8 22 88 0 0 chr4 69563509 69563566 -132764781 + AT_rich Low_complexity Low_complexity 1 57 0 237 395 52 15 chr4 69563784 69564052 -132764295 + L1MEc LINE L1 318 595 -5968 916 250 68 35 chr4 69564232 69564664 -132763683 + MER39 LTR ERV1 67 565 0 679 318 66 28 chr4 69564850 69565648 -132762699 + L1MEc LINE L1 1123 2093 -4470 1797 211 35 84 chr4 69565702 69566252 -132762095 + LTR8 LTR ERV1 16 538 -153 309 377 104 20 chr4 69567514 69568073 -132760274 + L2 LINE L2 2390 3053 -219 1096 231 96 45 chr4 69568094 69568427 -132759920 - MLT1A2 LTR MaLR 0 374 25 289 291 143 30 chr4 69568569 69568772 -132759575 + L2 LINE L2 3088 3313 0 337 350 10 0 chr4 69569411 69569511 -132758836 - LTR33 LTR ERVL -368 153 53 262 292 80 66 chr4 69569852 69569989 -132758358 - MIR SINE MIR -122 140 2 1796 265 95 40 chr4 69570639 69571367 -132756980 - MER21B LTR ERV1 -52 811 44 251 275 33 22 chr4 69571372 69571463 -132756884 - MER21B LTR ERV1 -771 92 1 238 268 62 52 chr4 69571578 69571675 -132756672 + MIR SINE MIR 160 257 -5 22 35 0 0 chr4 69571675 69571704 -132756643 + AT_rich Low_complexity Low_complexity 1 29 0 1533 232 87 5 chr4 69571946 69572326 -132756021 - MLT2B2 LTR ERVL -102 413 3 312 48 0 0 chr4 69572611 69572653 -132755694 + (TG)n Simple_repeat Simple_repeat 1 42 0 1515 235 63 87 chr4 69572986 69573489 -132754858 + MLT1E LTR MaLR 52 484 -21 46 54 0 0 chr4 69573908 69573982 -132754365 + AT_rich Low_complexity Low_complexity 1 74 0 288 0 0 0 chr4 69574236 69574268 -132754079 + (CA)n Simple_repeat Simple_repeat 1 32 0 1259 270 111 11 chr4 69575173 69575681 -132752666 + MLT2F LTR ERVL 1 605 -58 257 204 0 11 chr4 69575682 69575770 -132752577 + CT-rich Low_complexity Low_complexity 2 88 0 1058 331 86 60 chr4 69575798 69576710 -132751637 - L2 LINE L2 -1491 1823 889 1885 168 0 3 chr4 69576959 69577268 -132751079 - AluSx SINE Alu -4 308 1 260 271 0 0 chr4 69577281 69577351 -132750996 + CT-rich Low_complexity Low_complexity 3 72 0 234 322 0 0 chr4 69577355 69577414 -132750933 - L2 LINE L2 -5 3267 3209 10602 122 11 4 chr4 69577462 69579015 -132749332 - THE1B-int LTR MaLR -16 1564 1 1160 195 46 46 chr4 69579015 69579276 -132749071 - THE1B LTR MaLR 0 364 104 1714 201 16 0 chr4 69579376 69579690 -132748657 - Tigger6 DNA MER2_type -1278 319 1 703 273 144 15 chr4 69579690 69579954 -132748393 - HERVL LTR ERVL -2184 3470 3173 253 393 65 13 chr4 69580050 69580279 -132748068 + L2 LINE L2 2622 2862 -452 1657 180 28 6 chr4 69580964 69581291 -132747056 - L1MA3 LINE L1 -28 6277 5944 187 340 0 0 chr4 69582529 69582582 -132745765 + L2 LINE L2 3255 3307 -6 777 231 12 0 chr4 69583488 69583648 -132744699 - FRAM SINE Alu -9 167 6 23 68 0 0 chr4 69583656 69583700 -132744647 + AT_rich Low_complexity Low_complexity 1 44 0 322 195 12 0 chr4 69585835 69585917 -132742430 + L1M4 LINE L1 3662 3744 -2402 209 98 24 0 chr4 69585947 69585988 -132742359 + (TG)n Simple_repeat Simple_repeat 2 43 0 389 343 53 28 chr4 69586048 69586521 -132741826 + L1M4 LINE L1 3820 4304 -1842 618 290 55 19 chr4 69586535 69586952 -132741395 + L1M4 LINE L1 4346 4777 -1369 * 1007 271 79 32 chr4 69586946 69587049 -132741298 - L1MEc LINE L1 -4264 2132 2035 2035 124 34 48 chr4 69587049 69587428 -132740919 - THE1C LTR MaLR 0 375 2 1007 271 79 32 chr4 69587428 69587893 -132740454 - L1MEc LINE L1 -4361 2035 1537 451 277 103 114 chr4 69587900 69588481 -132739866 - L1MEc LINE L1 -5825 598 24 21 0 0 0 chr4 69588619 69588640 -132739707 + AT_rich Low_complexity Low_complexity 1 21 0 8201 85 11 0 chr4 69588765 69590690 -132737657 - L1PA7 LINE L1 0 6154 4219 3970 191 37 49 chr4 69590923 69591780 -132736567 + MER21B LTR ERV1 2 848 -15 327 244 134 24 chr4 69591795 69591959 -132736388 - L1MEc LINE L1 -4909 1487 1306 301 360 44 0 chr4 69592867 69593003 -132735344 - MIR3 SINE MIR 0 208 67 436 229 142 75 chr4 69593873 69594113 -132734234 - HAL1 LINE L1 -195 2312 2057 1397 193 10 34 chr4 69594134 69594430 -132733917 - AluJo SINE Alu -23 289 1 314 241 193 7 chr4 69594507 69594652 -132733695 - MIR SINE MIR -5 257 86 27 73 0 0 chr4 69594706 69594761 -132733586 + AT_rich Low_complexity Low_complexity 1 55 0 22 94 0 0 chr4 69595458 69595522 -132732825 + AT_rich Low_complexity Low_complexity 1 64 0 221 292 62 0 chr4 69595725 69595790 -132732557 - L2 LINE L2 -1 3312 3244 1430 216 30 30 chr4 69595790 69596152 -132732195 - MLT1A1 LTR MaLR 0 365 4 23 0 0 0 chr4 69596326 69596349 -132731998 + AT_rich Low_complexity Low_complexity 1 23 0 1543 167 3 44 chr4 69596647 69596940 -132731407 - AluJo SINE Alu -31 281 1 21 36 0 0 chr4 69597057 69597085 -132731262 + AT_rich Low_complexity Low_complexity 1 28 0 302 372 42 73 chr4 69598839 69599293 -132729054 - L2 LINE L2 -9 3263 2824 24 32 0 0 chr4 69599534 69599565 -132728782 + AT_rich Low_complexity Low_complexity 1 31 0 313 303 200 6 chr4 69599849 69600024 -132728323 + LTR33A LTR ERVL 65 273 -250 285 260 144 19 chr4 69600144 69600248 -132728099 + LTR33A LTR ERVL 407 523 0 22 35 0 0 chr4 69602453 69602482 -132725865 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 69602657 69602685 -132725662 + AT_rich Low_complexity Low_complexity 1 28 0 257 378 7 21 chr4 69603337 69603480 -132724867 - MIR SINE MIR -121 141 1 224 196 22 0 chr4 69604091 69604137 -132724210 + L2 LINE L2 3262 3308 -5 2043 133 3 0 chr4 69604396 69604689 -132723658 - AluSx SINE Alu -18 294 1 24 0 0 0 chr4 69605201 69605225 -132723122 + AT_rich Low_complexity Low_complexity 1 24 0 1502 251 77 68 chr4 69605748 69606361 -132721986 - MLT1E3 LTR MaLR 0 624 7 1084 128 19 0 chr4 69607560 69607716 -132720631 - AluSg/x SINE Alu -21 291 133 190 321 38 0 chr4 69609346 69609399 -132718948 - L2 LINE L2 -81 3191 3137 663 137 43 0 chr4 69609852 69609969 -132718378 - MER7A DNA MER2_type -154 183 62 7778 88 16 1 chr4 69609969 69611058 -132717289 - L1P LINE L1 -1408 4738 3633 5969 88 5 0 chr4 69611050 69611839 -132716508 + L1PA7 LINE L1 5327 6119 -35 6109 88 5 0 chr4 69611058 69611873 -132716474 + L1PA7 LINE L1 5327 6153 -1 455 233 0 0 chr4 69611873 69611952 -132716395 - MER7A DNA MER2_type -2958 80 1 190 237 26 0 chr4 69612877 69612953 -132715394 + (TATATG)n Simple_repeat Simple_repeat 2 79 0 318 106 0 0 chr4 69612986 69613033 -132715314 + (TG)n Simple_repeat Simple_repeat 2 48 0 505 252 8 0 chr4 69613298 69613443 -132714904 + FLAM_C SINE Alu 1 143 0 21 57 0 0 chr4 69614022 69614057 -132714290 + AT_rich Low_complexity Low_complexity 1 35 0 236 332 187 44 chr4 69614362 69614423 -132713924 + L2 LINE L2 96 147 -3167 384 88 0 0 chr4 69614423 69614480 -132713867 + (CA)n Simple_repeat Simple_repeat 2 58 0 236 332 187 44 chr4 69614480 69615027 -132713320 + L2 LINE L2 147 791 -2523 240 216 0 39 chr4 69615327 69615378 -132712969 + L2 LINE L2 3197 3245 -68 335 312 26 26 chr4 69616102 69616256 -132712091 + L1ME3A LINE L1 5267 5420 -2388 5559 68 16 0 chr4 69616681 69617412 -132710935 + L1PA8A LINE L1 5323 6065 -66 25 31 0 0 chr4 69618086 69618118 -132710229 + AT_rich Low_complexity Low_complexity 1 32 0 325 317 193 39 chr4 69618454 69619049 -132709298 + L2 LINE L2 2617 3313 0 23 54 0 0 chr4 69619305 69619342 -132709005 + AT_rich Low_complexity Low_complexity 1 37 0 4251 126 35 33 chr4 69619931 69620264 -132708083 - Tigger4(Zombi) DNA MER2_type 0 2731 2400 2470 48 3 6 chr4 69620264 69620575 -132707772 - AluY SINE Alu -1 310 1 4251 126 35 33 chr4 69620575 69620965 -132707382 - Tigger4(Zombi) DNA MER2_type -331 2400 2007 1637 205 9 31 chr4 69620964 69621286 -132707061 - Tigger4(Zombi) DNA MER2_type -2416 315 1 * 511 284 44 44 chr4 69621293 69621497 -132706850 - MIR SINE MIR -49 213 10 262 288 68 0 chr4 69621481 69621554 -132706793 + MIR SINE MIR 66 143 -65 * 435 312 23 55 chr4 69622293 69622511 -132705836 - Charlie8 DNA MER1_type -2152 265 55 210 37 0 0 chr4 69623083 69623110 -132705237 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 812 258 75 24 chr4 69623223 69623518 -132704829 + L1MCb LINE L1 1 310 -5735 21 82 0 0 chr4 69623575 69623624 -132704723 + AT_rich Low_complexity Low_complexity 1 49 0 431 333 211 14 chr4 69623639 69623933 -132704414 - L2 LINE L2 -2385 929 578 21 36 0 0 chr4 69623938 69623966 -132704381 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr4 69624056 69624076 -132704271 + (CA)n Simple_repeat Simple_repeat 2 21 0 255 338 31 25 chr4 69624094 69624254 -132704093 + L1ME3A LINE L1 5496 5656 -508 2399 139 26 2 chr4 69624306 69624722 -132703625 + L1PA13 LINE L1 5724 6149 -14 1801 158 7 0 chr4 69624847 69625131 -132703216 + AluSx SINE Alu 1 286 -26 308 290 122 8 chr4 69625306 69625437 -132702910 + L1ME3A LINE L1 5760 5905 -265 32 75 0 0 chr4 69625694 69625761 -132702586 + AT_rich Low_complexity Low_complexity 1 67 0 1978 107 3 41 chr4 69625938 69626257 -132702090 + AluY SINE Alu 1 307 -4 27 62 0 0 chr4 69626435 69626483 -132701864 + AT_rich Low_complexity Low_complexity 1 48 0 396 0 0 0 chr4 69627980 69628024 -132700323 + (TG)n Simple_repeat Simple_repeat 2 45 0 399 81 0 126 chr4 69628530 69628641 -132699706 + L1P LINE L1 3575 3671 -2475 626 159 30 15 chr4 69628745 69628877 -132699470 + MER41B-int LTR ERV1 5774 5907 -1298 * 2390 150 33 0 chr4 69628873 69629267 -132699080 + MER41B-int LTR ERV1 5536 5942 -4 2983 133 91 2 chr4 69629271 69629775 -132698572 + MER41B LTR ERV1 1 549 -86 257 219 104 10 chr4 69630660 69630756 -132697591 - L1MC4 LINE L1 -1318 6724 6620 270 0 0 0 chr4 69630842 69630872 -132697475 + (TG)n Simple_repeat Simple_repeat 2 31 0 29 84 0 0 chr4 69631908 69631979 -132696368 + AT_rich Low_complexity Low_complexity 1 71 0 23 33 0 0 chr4 69633235 69633265 -132695082 + AT_rich Low_complexity Low_complexity 1 30 0 238 315 0 14 chr4 69633373 69633446 -132694901 + L2 LINE L2 3242 3313 0 1359 192 127 15 chr4 69634125 69634205 -132694142 + L1MA9 LINE L1 5700 5770 -542 1928 156 0 0 chr4 69634205 69634500 -132693847 + AluSx SINE Alu 1 295 -17 399 21 0 0 chr4 69634503 69634551 -132693796 + (CA)n Simple_repeat Simple_repeat 1 48 0 1359 192 127 15 chr4 69634551 69634804 -132693543 + L1MA9 LINE L1 5771 6075 -237 22 35 0 0 chr4 69636374 69636403 -132691944 + AT_rich Low_complexity Low_complexity 1 29 0 348 284 9 17 chr4 69636687 69636729 -132691618 + GA-rich Low_complexity Low_complexity 2 43 -73 1939 138 0 35 chr4 69636729 69637040 -132691307 + AluSp SINE Alu 12 311 -2 348 284 9 17 chr4 69637040 69637113 -132691234 + GA-rich Low_complexity Low_complexity 43 116 0 1121 240 22 60 chr4 69637363 69637776 -132690571 + MLT2C1 LTR ERVL 1 397 0 21 0 0 0 chr4 69637791 69637812 -132690535 + AT_rich Low_complexity Low_complexity 1 21 0 222 270 0 0 chr4 69638123 69638197 -132690150 + (TA)n Simple_repeat Simple_repeat 1 74 0 383 344 40 44 chr4 69638221 69638448 -132689899 + L2 LINE L2 1717 1942 -1372 22 56 0 0 chr4 69638589 69638625 -132689722 + AT_rich Low_complexity Low_complexity 1 36 0 1468 212 20 3 chr4 69638806 69639103 -132689244 - AluJo SINE Alu -10 302 1 210 385 163 25 chr4 69639254 69639579 -132688768 - L2 LINE L2 -341 2973 2604 335 341 50 22 chr4 69639794 69639976 -132688371 + MLT1J2 LTR MaLR 264 450 0 347 332 88 25 chr4 69640108 69640346 -132688001 - MER102a DNA MER1_type -1 329 77 21 36 0 0 chr4 69640350 69640378 -132687969 + AT_rich Low_complexity Low_complexity 1 28 0 298 279 61 7 chr4 69641016 69641163 -132687184 + L1MEd LINE L1 993 1147 -4972 21 0 0 0 chr4 69643122 69643143 -132685204 + AT_rich Low_complexity Low_complexity 1 21 0 413 19 19 0 chr4 69644622 69644676 -132683671 + (CA)n Simple_repeat Simple_repeat 2 56 0 268 266 32 24 chr4 69645066 69645190 -132683157 - HAL1b LINE L1 -46 1302 1178 253 305 12 12 chr4 69645198 69645280 -132683067 + (TGGA)n Simple_repeat Simple_repeat 4 85 0 35 41 0 0 chr4 69645280 69645329 -132683018 + AT_rich Low_complexity Low_complexity 1 49 0 34 24 0 0 chr4 69645981 69646022 -132682325 + AT_rich Low_complexity Low_complexity 1 41 0 471 292 45 8 chr4 69647628 69647895 -132680452 + L1ME LINE L1 5259 5535 -635 301 321 0 27 chr4 69647912 69648024 -132680323 - MER94 DNA DNA -17 117 9 209 171 49 0 chr4 69648117 69648158 -132680189 + CT-rich Low_complexity Low_complexity 3 45 0 4556 113 35 1 chr4 69648185 69648902 -132679445 - L1PA13 LINE L1 0 6163 5423 * 5916 98 13 14 chr4 69648892 69649368 -132678979 - L1PA13 LINE L1 0 6163 5688 1934 158 0 0 chr4 69649368 69649666 -132678681 - AluSx SINE Alu -14 298 1 5916 98 13 14 chr4 69649666 69650641 -132677706 - L1PA13 LINE L1 -475 5688 4712 7764 208 26 15 chr4 69650650 69652467 -132675880 - L1PA13 LINE L1 -2351 3795 1958 * 29799 52 2 0 chr4 69652465 69656254 -132672093 - L1P LINE L1 -1259 4887 1091 7083 53 6 0 chr4 69656354 69657796 -132670551 + L1PA5 LINE L1 4706 6151 -3 406 222 213 30 chr4 69657796 69657937 -132670410 + MER67C LTR ERV1 251 406 -255 402 252 58 52 chr4 69657950 69658105 -132670242 + MER67D LTR ERV1 359 514 0 227 293 13 13 chr4 69658125 69658200 -132670147 + L2 LINE L2 3239 3313 0 405 151 118 32 chr4 69658362 69658455 -132669892 + MLT1I LTR MaLR 304 404 -5 736 181 64 0 chr4 69660824 69660995 -132667352 - MER53 DNA DNA -4 185 4 28 0 0 0 chr4 69661934 69661962 -132666385 + AT_rich Low_complexity Low_complexity 1 28 0 211 266 0 31 chr4 69662034 69662098 -132666249 + MIR SINE MIR 79 140 -122 208 297 103 55 chr4 69662277 69662442 -132665905 + MIR SINE MIR 83 255 -7 24 0 0 0 chr4 69663091 69663115 -132665232 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 69663168 69663190 -132665157 + AT_rich Low_complexity Low_complexity 1 22 0 773 328 41 12 chr4 69664126 69664446 -132663901 + LTR16A LTR ERVL 56 384 -66 491 290 103 0 chr4 69664781 69664926 -132663421 - MIR SINE MIR -65 197 38 21 36 0 0 chr4 69665690 69665718 -132662629 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 69666352 69666382 -132661965 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 69666427 69666455 -132661892 + AT_rich Low_complexity Low_complexity 1 28 0 252 86 0 0 chr4 69666485 69666520 -132661827 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 2426 68 7 0 chr4 69666712 69667021 -132661326 + AluY SINE Alu 1 311 0 547 330 18 18 chr4 69668130 69668348 -132659999 - MIR SINE MIR 0 262 45 338 132 13 0 chr4 69668554 69668630 -132659717 + (TA)n Simple_repeat Simple_repeat 2 78 0 215 299 162 30 chr4 69669035 69669157 -132659190 - L2 LINE L2 -9 3304 3153 2424 18 0 0 chr4 69669157 69669429 -132658918 + AluYa5 SINE Alu 39 310 -1 215 299 162 30 chr4 69669429 69669473 -132658874 - L2 LINE L2 -160 3153 3116 1904 106 3 18 chr4 69670173 69670456 -132657891 + AluSq SINE Alu 33 311 -2 21 0 0 0 chr4 69671392 69671413 -132656934 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr4 69671603 69671627 -132656720 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 186 71 0 0 chr4 69673098 69673126 -132655221 + (T)n Simple_repeat Simple_repeat 1 28 0 295 189 0 0 chr4 69674410 69674463 -132653884 - L1MD1 LINE L1 -262 5980 5928 1492 261 49 9 chr4 69674493 69675025 -132653322 - L1M4 LINE L1 -3454 2692 2140 1011 205 109 0 chr4 69675077 69675287 -132653060 - L1PB3 LINE L1 -3 6151 5919 530 225 28 78 chr4 69675282 69675342 -132653005 - L1MEc LINE L1 -1718 4497 4436 * 2348 67 0 6 chr4 69675342 69675658 -132652689 - L1PA8 LINE L1 -3 6169 5856 530 225 28 78 chr4 69675658 69675815 -132652532 - L1MEc LINE L1 -1779 4436 4291 2076 186 62 2 chr4 69675815 69676219 -132652128 - MSTA LTR MaLR 0 428 1 8212 201 18 6 chr4 69676219 69677850 -132650497 - MSTA-int LTR MaLR 0 1651 1 2413 164 7 7 chr4 69677862 69678270 -132650077 - MSTA LTR MaLR -20 408 1 440 152 0 0 chr4 69678380 69678446 -132649901 + THE1C LTR MaLR 310 375 0 10238 121 2 1 chr4 69678446 69679881 -132648466 + THE1C-int LTR MaLR 1 1437 -143 639 189 0 0 chr4 69679981 69680087 -132648260 + THE1B LTR MaLR 259 364 0 6366 244 22 28 chr4 69680087 69680986 -132647361 - L1MEc LINE L1 -2138 4077 3174 2185 106 3 31 chr4 69680986 69681306 -132647041 - AluY SINE Alu 0 311 1 6366 244 22 28 chr4 69681306 69682665 -132645682 - L1MEc LINE L1 -3041 3174 1826 357 265 83 30 chr4 69682704 69682836 -132645511 - L1PBa LINE L1 -5799 1064 926 182 271 42 0 chr4 69682944 69682992 -132645355 + MIR SINE MIR 61 110 -152 519 260 0 16 chr4 69683415 69683542 -132644805 - MER5B DNA MER1_type -52 126 2 396 283 200 0 chr4 69683557 69683702 -132644645 - MER5A DNA MER1_type -6 183 10 424 250 40 53 chr4 69684104 69684256 -132644091 + L1MC4 LINE L1 6721 6870 -1172 2021 118 6 3 chr4 69684324 69684645 -132643702 - L1P LINE L1 -1161 4985 4664 1638 303 52 15 chr4 69684642 69685259 -132643088 - L1MEc LINE L1 -5728 668 29 * 22 0 0 0 chr4 69685843 69685865 -132642482 + AT_rich Low_complexity Low_complexity 1 22 0 877 44 0 102 chr4 69688221 69688358 -132639989 + L1PA7 LINE L1 6029 6151 -3 221 313 24 24 chr4 69688422 69688505 -132639842 + L2 LINE L2 3186 3268 -4 789 250 79 25 chr4 69689754 69690084 -132638263 - MSTD LTR MaLR 0 396 1 3781 281 38 68 chr4 69690084 69691791 -132636556 - MSTD-int LTR MaLR 0 1651 2 1221 186 32 124 chr4 69691793 69692229 -132636118 - MSTD LTR MaLR 0 396 1 230 359 8 23 chr4 69692234 69692365 -132635982 + MLT1H LTR MaLR 45 173 -376 519 236 19 0 chr4 69692952 69693058 -132635289 - MER58 DNA MER1_type -2140 280 173 23 0 0 0 chr4 69693937 69693960 -132634387 + AT_rich Low_complexity Low_complexity 1 23 0 30 77 0 0 chr4 69694204 69694269 -132634078 + AT_rich Low_complexity Low_complexity 1 65 0 357 378 105 39 chr4 69694471 69695296 -132633051 - L2 LINE L2 0 3272 2394 319 227 15 0 chr4 69695437 69695503 -132632844 + MER21B LTR ERV1 21 87 -776 1984 255 156 64 chr4 69695528 69696242 -132632105 + MER21B LTR ERV1 19 865 -66 570 287 72 10 chr4 69696965 69697174 -132631173 - MIR SINE MIR -1 261 40 2910 213 20 13 chr4 69697479 69698080 -132630267 - MER77 LTR ERV1 0 605 1 21 0 0 0 chr4 69698458 69698479 -132629868 + AT_rich Low_complexity Low_complexity 1 21 0 382 135 14 0 chr4 69698508 69698582 -132629765 - L1MB4 LINE L1 0 6180 6106 2532 201 18 83 chr4 69698598 69698804 -132629543 - L1MB4 LINE L1 -191 5989 5771 315 113 0 0 chr4 69698804 69698857 -132629490 + (TA)n Simple_repeat Simple_repeat 1 53 0 2532 201 18 83 chr4 69698857 69699563 -132628784 - L1MB4 LINE L1 -409 5771 5139 819 167 209 29 chr4 69699563 69699773 -132628574 + MSTD LTR MaLR 1 248 -148 659 168 34 8 chr4 69699775 69699894 -132628453 - LTR12 LTR ERV1 -234 480 359 378 230 10 0 chr4 69699894 69699994 -132628353 - LTR30 LTR ERV1 -98 624 524 1226 142 21 21 chr4 69700060 69700293 -132628054 - LTR12 LTR ERV1 -481 233 1 818 199 7 7 chr4 69700293 69700444 -132627903 + MSTD LTR MaLR 246 396 0 277 202 101 0 chr4 69700449 69700538 -132627809 - L1MB4 LINE L1 -1015 5131 5034 448 251 127 50 chr4 69700762 69701061 -132627286 + HAL1 LINE L1 1668 1989 -518 802 185 23 23 chr4 69701120 69701293 -132627054 - AluJo SINE Alu -51 261 89 235 197 0 28 chr4 69704017 69704088 -132624259 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 321 311 72 38 chr4 69704571 69704780 -132623567 + L2 LINE L2 1864 2079 -1235 917 271 65 62 chr4 69704881 69705559 -132622788 - L1MEc LINE L1 -5118 1278 599 7044 55 6 67 chr4 69705680 69707140 -132621207 - L1PA5 LINE L1 0 6154 4728 8541 45 5 1 chr4 69707140 69708210 -132620137 + L1PA5 LINE L1 3680 4753 -1393 303 340 147 8 chr4 69708264 69708523 -132619824 - L1MB4 LINE L1 -1274 4872 4578 229 398 0 9 chr4 69708982 69709095 -132619252 + MIR SINE MIR 47 158 -104 287 347 128 22 chr4 69709376 69709660 -132618687 - L2 LINE L2 -285 3028 2708 21 71 0 0 chr4 69709718 69709760 -132618587 + AT_rich Low_complexity Low_complexity 1 42 0 1467 211 11 0 chr4 69710108 69710388 -132617959 - AluJo SINE Alu -22 290 8 22 35 0 0 chr4 69710400 69710429 -132617918 + AT_rich Low_complexity Low_complexity 1 29 0 2052 112 0 13 chr4 69710666 69710971 -132617376 + AluSg SINE Alu 1 301 -9 194 377 36 14 chr4 69711083 69711221 -132617126 - L3 LINE CR1 -1194 383 243 1455 142 0 0 chr4 69712374 69712593 -132615754 - AluSg/x SINE Alu -5 307 89 36 91 0 0 chr4 69712658 69712757 -132615590 + AT_rich Low_complexity Low_complexity 1 99 0 1795 194 50 14 chr4 69712919 69713342 -132615005 + L1MB1 LINE L1 5702 6139 -29 928 113 7 7 chr4 69713663 69713813 -132614534 + L1MA5 LINE L1 6146 6295 -5 588 229 8 8 chr4 69714280 69714411 -132613936 + FLAM_A SINE Alu 11 141 -1 2896 100 7 131 chr4 69714566 69714798 -132613549 - L1P LINE L1 -883 5263 5004 2437 80 0 0 chr4 69714798 69715109 -132613238 - AluY SINE Alu 0 311 1 2896 100 7 131 chr4 69715109 69715494 -132612853 - L1P LINE L1 -1142 5004 4723 24 53 0 0 chr4 69715716 69715754 -132612593 + AT_rich Low_complexity Low_complexity 1 38 0 519 149 176 67 chr4 69715793 69715999 -132612348 + L1MA3 LINE L1 6082 6305 0 1672 154 55 15 chr4 69716448 69716791 -132611556 - L1MA8 LINE L1 -173 6118 5762 1428 214 13 51 chr4 69717199 69717573 -132610774 + MLT1A1 LTR MaLR 6 365 0 375 78 0 0 chr4 69719074 69719125 -132609222 + (TA)n Simple_repeat Simple_repeat 2 52 0 1428 183 65 0 chr4 69719156 69719435 -132608912 + MER2 DNA MER2_type 36 332 -13 2035 111 34 0 chr4 69719436 69719733 -132608614 + AluSx SINE Alu 1 307 -5 24 53 0 0 chr4 69720177 69720215 -132608132 + AT_rich Low_complexity Low_complexity 1 38 0 436 290 15 45 chr4 69720593 69720784 -132607563 - MIR SINE MIR -60 202 15 498 335 61 21 chr4 69720893 69721404 -132606943 + L1MEc LINE L1 1284 1814 -4582 382 319 138 18 chr4 69721519 69721801 -132606546 + L1MEc LINE L1 1895 2210 -4186 1310 234 73 27 chr4 69721843 69722247 -132606100 - MLT1C LTR MaLR -41 426 2 952 290 87 11 chr4 69722252 69722956 -132605391 + L1MEc LINE L1 2198 2954 -3261 185 0 40 0 chr4 69722972 69722997 -132605350 + (TAAAAA)n Simple_repeat Simple_repeat 5 30 0 2363 60 0 29 chr4 69725344 69725660 -132602687 - AluY SINE Alu -4 307 1 27 29 0 0 chr4 69726160 69726194 -132602153 + AT_rich Low_complexity Low_complexity 1 34 0 330 288 94 35 chr4 69726350 69726520 -132601827 - LTR16A LTR ERVL -8 442 263 1831 121 0 88 chr4 69727145 69727484 -132600863 - AluSg1 SINE Alu 0 309 1 212 285 23 85 chr4 69727721 69727851 -132600496 - MIR SINE MIR -15 247 126 282 374 92 6 chr4 69728088 69728251 -132600096 - MIR3 SINE MIR -15 193 17 476 255 49 0 chr4 69728700 69728802 -132599545 + Tigger3(Golem) DNA MER2_type 2 108 -2921 * 3076 140 124 26 chr4 69728793 69729477 -132598870 + Tigger3(Golem) DNA MER2_type 2277 3027 -2 198 0 0 0 chr4 69729941 69729963 -132598384 + (TTAAA)n Simple_repeat Simple_repeat 5 26 0 966 227 111 3 chr4 69730016 69730314 -132598033 + MER57A LTR ERV1 109 403 0 3097 171 16 25 chr4 69730647 69731196 -132597151 - MLT2B3 LTR ERVL -9 545 2 22 0 0 0 chr4 69732344 69732366 -132595981 + AT_rich Low_complexity Low_complexity 1 22 0 228 35 0 0 chr4 69733785 69733814 -132594533 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 263 276 238 28 chr4 69733971 69734185 -132594162 - L2 LINE L2 -337 2977 2719 26 30 0 0 chr4 69734234 69734267 -132594080 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr4 69734372 69734396 -132593951 + AT_rich Low_complexity Low_complexity 1 24 0 315 326 55 44 chr4 69734690 69735055 -132593292 - L1M4c LINE L1 -4005 2558 2190 25 31 0 0 chr4 69735161 69735193 -132593154 + AT_rich Low_complexity Low_complexity 1 32 0 35 41 0 0 chr4 69735251 69735300 -132593047 + AT_rich Low_complexity Low_complexity 1 49 0 282 291 13 31 chr4 69735370 69735566 -132592781 - L1M4c LINE L1 -4577 1805 1502 3029 159 10 18 chr4 69735804 69736402 -132591945 - L1MA5A LINE L1 0 6297 5705 6498 184 17 6 chr4 69736405 69737723 -132590624 + L1 LINE L1 3657 4988 -1158 260 154 39 0 chr4 69738391 69738443 -132589904 - L2 LINE L2 -5 3308 3255 21 71 0 0 chr4 69738943 69738985 -132589362 + AT_rich Low_complexity Low_complexity 1 42 0 214 338 91 25 chr4 69739361 69739559 -132588788 - L2 LINE L2 -528 2786 2576 222 118 0 0 chr4 69740143 69740177 -132588170 + (TA)n Simple_repeat Simple_repeat 2 35 0 639 311 83 12 chr4 69740400 69740641 -132587706 + MIR SINE MIR 5 262 0 675 171 0 16 chr4 69740961 69741090 -132587257 - L1PB4 LINE L1 -1281 4865 4739 * 2706 191 17 15 chr4 69741089 69742000 -132586347 + L1PB4 LINE L1 4876 5789 -367 390 178 16 31 chr4 69742012 69742141 -132586206 + (TA)n Simple_repeat Simple_repeat 2 128 0 254 77 0 0 chr4 69742142 69742181 -132586166 - L1M2 LINE L1 -512 5788 5750 282 160 0 0 chr4 69742210 69742260 -132586087 + (TG)n Simple_repeat Simple_repeat 2 51 0 1960 167 8 3 chr4 69742260 69742614 -132585733 + L1PB4 LINE L1 5799 6154 -2 27 0 0 0 chr4 69743358 69743385 -132584962 + AT_rich Low_complexity Low_complexity 1 27 0 243 266 45 50 chr4 69744731 69744930 -132583417 - L1ME LINE L1 -464 5657 5460 22 0 0 0 chr4 69745333 69745355 -132582992 + AT_rich Low_complexity Low_complexity 1 22 0 219 196 18 18 chr4 69745668 69745724 -132582623 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 33 80 0 0 chr4 69745782 69745857 -132582490 + AT_rich Low_complexity Low_complexity 1 75 0 21 36 0 0 chr4 69746285 69746313 -132582034 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 69747104 69747133 -132581214 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 69748848 69748869 -132579478 + AT_rich Low_complexity Low_complexity 1 21 0 869 266 62 57 chr4 69750385 69750878 -132577469 - MLT1E LTR MaLR -3 590 3 1760 164 0 31 chr4 69751749 69752067 -132576280 - MER54B LTR ERVL 0 793 486 21 36 0 0 chr4 69752799 69752827 -132575520 + AT_rich Low_complexity Low_complexity 1 28 0 35 71 0 0 chr4 69753074 69753144 -132575203 + AT_rich Low_complexity Low_complexity 1 70 0 28 0 0 0 chr4 69753541 69753569 -132574778 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 69753959 69753980 -132574367 + AT_rich Low_complexity Low_complexity 1 21 0 827 111 62 0 chr4 69754884 69755028 -132573319 - L1PA12 LINE L1 0 6168 6016 2919 112 0 24 chr4 69755028 69755484 -132572863 + L1PA12 LINE L1 5599 6043 -125 26 64 0 0 chr4 69755825 69755872 -132572475 + AT_rich Low_complexity Low_complexity 1 47 0 24 53 0 0 chr4 69755883 69755921 -132572426 + AT_rich Low_complexity Low_complexity 1 38 0 353 332 48 18 chr4 69756065 69756396 -132571951 - L1MEc LINE L1 -4621 1775 1435 * 943 202 16 14 chr4 69756387 69756426 -132571921 - L1PA16 LINE L1 -2 6172 6135 2072 132 0 0 chr4 69756426 69756722 -132571625 - AluSq SINE Alu -13 300 5 943 202 16 14 chr4 69756722 69757356 -132570991 - L1PA16 LINE L1 -39 6135 5455 * 3016 91 41 4 chr4 69757352 69757887 -132570460 + L1PA16 LINE L1 4930 5475 -679 27971 33 3 0 chr4 69757888 69762072 -132566275 + L1PA4 LINE L1 1958 6154 -1 2521 246 86 22 chr4 69762201 69763063 -132565284 - L1MA5 LINE L1 -27 7692 6776 * 5964 227 51 7 chr4 69763059 69765492 -132562855 - L1MA5 LINE L1 -1656 5909 3347 232 328 45 22 chr4 69765849 69765983 -132562364 - LTR16B LTR ERVL -9 455 319 478 355 49 61 chr4 69766508 69767249 -132561098 - HERV16 LTR ERVL -1792 3862 3131 443 343 56 10 chr4 69767360 69767663 -132560684 - HERV16 LTR ERVL -2040 2956 2663 986 197 134 13 chr4 69767684 69767923 -132560424 - MLT1B LTR MaLR -27 363 96 261 0 0 0 chr4 69767955 69767984 -132560363 + (TG)n Simple_repeat Simple_repeat 2 30 0 6258 92 7 8 chr4 69768011 69769071 -132559276 - L1PA8A LINE L1 -27 6419 5357 * 14036 155 22 7 chr4 69769041 69771794 -132556553 - L1P3 LINE L1 -1436 5025 1467 6006 57 146 78 chr4 69771794 69772891 -132555456 + MER11A LTR ERVK 1 1266 0 7570 171 29 14 chr4 69772891 69774353 -132553994 - L1P3 LINE L1 -4734 1141 2 2451 211 36 4 chr4 69776515 69777065 -132551282 + L1MB1 LINE L1 5565 6132 -57 * 8003 233 13 15 chr4 69777059 69779085 -132549262 - L1P LINE L1 -2079 4067 2047 4807 205 40 10 chr4 69779104 69780207 -132548140 + L1PA15 LINE L1 4145 5214 -951 1870 157 64 14 chr4 69780207 69780564 -132547783 - THE1C LTR MaLR 0 375 1 8914 150 41 7 chr4 69780564 69782091 -132546256 - THE1C-int LTR MaLR 0 1580 2 1684 149 95 17 chr4 69782092 69782440 -132545907 - THE1C LTR MaLR 0 375 1 4807 205 40 10 chr4 69782440 69782805 -132545542 + L1PA15 LINE L1 5213 5658 -507 6368 130 12 9 chr4 69782806 69784644 -132543703 + L1PA8 LINE L1 4323 6169 -3 2845 166 0 2 chr4 69784648 69785135 -132543212 + L1PA15 LINE L1 5673 6158 -7 3024 215 37 52 chr4 69785152 69786118 -132542229 - L1 LINE L1 -2648 3498 2547 23 0 0 0 chr4 69786391 69786414 -132541933 + AT_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chr4 69786548 69786592 -132541755 + AT_rich Low_complexity Low_complexity 1 44 0 897 245 95 0 chr4 69787613 69787854 -132540493 - MER90 LTR ERV1 -16 598 335 267 359 134 14 chr4 69788298 69788521 -132539826 + MIR SINE MIR 13 262 0 2042 150 0 6 chr4 69788785 69789098 -132539249 + AluSx SINE Alu 1 311 -1 207 274 167 20 chr4 69789377 69789479 -132538868 - L2 LINE L2 0 3313 3197 190 335 80 62 chr4 69789841 69790065 -132538282 + L2 LINE L2 2572 2799 -515 3753 189 23 6 chr4 69790329 69791127 -132537220 + L1MA3 LINE L1 4279 5089 -1057 23 68 0 0 chr4 69791127 69791171 -132537176 + AT_rich Low_complexity Low_complexity 1 44 0 1432 180 32 36 chr4 69791177 69791455 -132536892 - AluJo SINE Alu -30 282 6 5310 178 28 8 chr4 69791457 69792665 -132535682 + L1MA3 LINE L1 5074 6305 0 316 276 39 64 chr4 69792767 69792923 -132535424 - MER46C DNA MER2_type -8 330 179 2196 166 38 33 chr4 69793682 69794104 -132534243 - MSTB LTR MaLR -2 424 1 503 228 0 24 chr4 69796586 69796709 -132531638 + FLAM_A SINE Alu 20 139 -3 2394 68 0 0 chr4 69796938 69797233 -132531114 + AluY SINE Alu 3 297 -14 37 0 0 0 chr4 69799637 69799674 -132528673 + AT_rich Low_complexity Low_complexity 1 37 0 189 0 0 0 chr4 69799819 69799840 -132528507 + (TA)n Simple_repeat Simple_repeat 2 22 0 5541 216 67 16 chr4 69800208 69801548 -132526799 + L1MCa LINE L1 21 1428 -4998 1104 145 35 92 chr4 69801564 69801749 -132526598 + L1MCa LINE L1 1526 1720 -4706 1813 171 3 16 chr4 69801749 69802065 -132526282 + AluSx SINE Alu 1 312 0 1495 200 7 10 chr4 69802069 69802359 -132525988 + AluSx SINE Alu 1 289 -23 1104 145 35 92 chr4 69802359 69802511 -132525836 + L1MCa LINE L1 1723 1927 -4499 1364 248 23 0 chr4 69802662 69802964 -132525383 + MLT2D LTR ERVL 9 317 -97 233 29 29 0 chr4 69802968 69803002 -132525345 + (TG)n Simple_repeat Simple_repeat 2 36 0 305 196 0 0 chr4 69803142 69803193 -132525154 + THE1C LTR MaLR 325 375 0 4496 231 11 3 chr4 69803197 69804299 -132524048 - L1P LINE L1 -894 5252 4142 8055 231 13 15 chr4 69804315 69806341 -132522006 + L1P LINE L1 2047 4067 -2079 2464 209 36 4 chr4 69806335 69806885 -132521462 - L1MB1 LINE L1 -57 6132 5565 * 7592 170 30 14 chr4 69809049 69810509 -132517838 + L1PA8A LINE L1 2 1492 -4734 6079 56 146 76 chr4 69810509 69811604 -132516743 - MER11A LTR ERVK 0 1266 1 14080 144 22 6 chr4 69811604 69814357 -132513990 + L1PA8A LINE L1 1467 5025 -1436 6223 95 8 15 chr4 69814327 69815412 -132512935 + L1PA8A LINE L1 5357 6438 -4 * 279 0 0 0 chr4 69815412 69815443 -132512904 + (CA)n Simple_repeat Simple_repeat 2 32 0 986 197 134 13 chr4 69815475 69815714 -132512633 + MLT1B LTR MaLR 96 363 -27 443 343 56 10 chr4 69815735 69816038 -132512309 + HERV16 LTR ERVL 2663 2956 -2040 472 366 44 54 chr4 69816100 69816890 -132511457 + HERV16 LTR ERVL 3081 3862 -1792 232 328 45 22 chr4 69817415 69817549 -132510798 + LTR16B LTR ERVL 319 455 -9 7765 236 59 9 chr4 69817906 69820339 -132508008 + L1MA5 LINE L1 3347 5909 -1656 2534 246 86 22 chr4 69820335 69821197 -132507150 + L1MA5 LINE L1 6776 7692 -27 * 4578 29 9 2 chr4 69821326 69821878 -132506469 - L1PA4 LINE L1 -1 6154 5599 378 298 70 88 chr4 69821992 69822478 -132505869 + LTR67 LTR ERVL 81 557 0 250 321 99 19 chr4 69822529 69822691 -132505656 + L2 LINE L2 2440 2614 -700 480 271 62 60 chr4 69823303 69823753 -132504594 - L1M4 LINE L1 -2570 3576 3126 254 368 118 25 chr4 69824319 69824640 -132503707 - MLT1J LTR MaLR -153 358 8 41988 36 25 1 chr4 69824694 69830701 -132497646 + L1PA2 LINE L1 2 6155 0 390 310 94 30 chr4 69831970 69832267 -132496080 - L1MC5 LINE L1 -220 7741 7426 246 287 49 21 chr4 69832366 69832509 -132495838 - L1MC4a LINE L1 -396 7412 7266 320 325 59 18 chr4 69832528 69832697 -132495650 - L1MC4 LINE L1 -786 7256 7081 261 268 39 91 chr4 69832770 69833001 -132495346 - L1MC5 LINE L1 -974 6987 6769 412 330 117 34 chr4 69833044 69833453 -132494894 - L1M4 LINE L1 -3303 2843 2401 28 48 0 0 chr4 69833773 69833815 -132494532 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr4 69833873 69833896 -132494451 + AT_rich Low_complexity Low_complexity 1 23 0 192 143 0 0 chr4 69834202 69834244 -132494103 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 258 214 36 0 chr4 69835192 69835248 -132493099 - MIR SINE MIR -8 254 197 2130 95 4 0 chr4 69835391 69835695 -132492652 - AluY SINE Alu 0 311 7 6006 92 15 6 chr4 69836404 69837272 -132491075 - L1PA8A LINE L1 -1 6130 5255 8427 135 28 2 chr4 69837278 69838666 -132489681 + L1PA8A LINE L1 3828 5251 -895 186 233 44 78 chr4 69839503 69839593 -132488754 - L2 LINE L2 -1343 1971 1885 1985 118 0 14 chr4 69840941 69841238 -132487109 - AluSg SINE Alu -17 293 1 21 0 0 0 chr4 69841242 69841263 -132487084 + AT_rich Low_complexity Low_complexity 1 21 0 311 0 26 0 chr4 69841267 69841306 -132487041 + (TA)n Simple_repeat Simple_repeat 1 40 0 1583 31 0 2 chr4 69841734 69841928 -132486419 - L1PA4 LINE L1 -188 5967 5776 198 0 0 0 chr4 69841938 69841960 -132486387 + (TAA)n Simple_repeat Simple_repeat 3 24 0 207 0 0 0 chr4 69841985 69842008 -132486339 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 381 276 67 39 chr4 69842066 69842320 -132486027 - L1MC5 LINE L1 -383 7578 7318 5280 190 36 18 chr4 69842737 69843420 -132484927 + L1PA16 LINE L1 4067 4736 -1430 2535 4 0 0 chr4 69843420 69843696 -132484651 + AluYa5 SINE Alu 33 308 -3 5280 190 36 18 chr4 69843696 69845076 -132483271 + L1PA16 LINE L1 4736 6166 0 22 0 0 0 chr4 69845170 69845192 -132483155 + AT_rich Low_complexity Low_complexity 1 22 0 1925 125 7 4 chr4 69845761 69846040 -132482307 + AluSq SINE Alu 2 281 -32 411 153 33 27 chr4 69846056 69846206 -132482141 + (TA)n Simple_repeat Simple_repeat 1 151 0 26 0 0 0 chr4 69846265 69846291 -132482056 + AT_rich Low_complexity Low_complexity 1 26 0 2019 126 3 76 chr4 69846343 69846420 -132481927 - MLT2A2 LTR ERVL 0 453 372 1969 166 0 0 chr4 69846420 69846716 -132481631 - AluSx SINE Alu -16 296 1 2019 126 3 76 chr4 69846716 69846994 -132481353 - MLT2A2 LTR ERVL -81 372 124 225 226 0 0 chr4 69847127 69847180 -132481167 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 264 179 18 0 chr4 69847180 69847236 -132481111 + MLT2B2 LTR ERVL 459 515 0 288 77 0 0 chr4 69847848 69847887 -132480460 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 1342 259 23 11 chr4 69848281 69848629 -132479718 - MSTB LTR MaLR 0 426 75 506 251 145 38 chr4 69848823 69849058 -132479289 + MIR SINE MIR 3 262 0 1048 237 76 25 chr4 69849234 69849551 -132478796 + MLT1D LTR MaLR 14 346 -159 4460 141 19 19 chr4 69850511 69851269 -132477078 + L1PB3 LINE L1 5395 6152 -2 2088 158 35 0 chr4 69851298 69851672 -132476675 + L1MB1 LINE L1 5725 6111 -78 285 98 0 0 chr4 69851752 69851793 -132476554 + (GAAAA)n Simple_repeat Simple_repeat 4 44 0 21 71 0 0 chr4 69852658 69852700 -132475647 + AT_rich Low_complexity Low_complexity 1 42 0 267 217 60 114 chr4 69852746 69852912 -132475435 - MIR SINE MIR -68 194 38 624 297 73 0 chr4 69853310 69853529 -132474818 + MIR SINE MIR 27 261 -1 2338 134 28 14 chr4 69854023 69854382 -132473965 - THE1B LTR MaLR 0 364 1 451 285 107 73 chr4 69854897 69855307 -132473040 - MLT1J1 LTR MaLR 0 446 23 258 0 47 23 chr4 69856396 69856439 -132471908 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 333 47 0 0 chr4 69856945 69856988 -132471359 + (CA)n Simple_repeat Simple_repeat 2 44 0 303 308 58 103 chr4 69858392 69858548 -132469799 + MIR SINE MIR 5 153 -109 262 359 76 0 chr4 69859009 69859101 -132469246 - L2 LINE L2 -35 3237 3139 1375 200 78 44 chr4 69859706 69859901 -132468446 - MLT1A2 LTR MaLR 0 374 160 395 19 19 0 chr4 69859901 69859953 -132468394 + (CA)n Simple_repeat Simple_repeat 2 54 0 1375 200 78 44 chr4 69859953 69860117 -132468230 - MLT1A2 LTR MaLR -214 160 3 2083 228 26 0 chr4 69860120 69860550 -132467797 - MLT1A2-int LTR MaLR -1 1734 1294 401 276 0 83 chr4 69860634 69860779 -132467568 - MLT1A2-int LTR MaLR -927 808 676 228 254 0 45 chr4 69860834 69860901 -132467446 - MLT1A2-int LTR MaLR -484 887 824 2747 223 49 9 chr4 69860939 69861572 -132466775 - MLT1A2-int LTR MaLR -1077 658 1 692 189 123 12 chr4 69861572 69861875 -132466472 - MLT1A2 LTR MaLR 0 374 8 192 306 59 12 chr4 69863078 69863163 -132465184 + MIR SINE MIR 77 165 -97 26 0 0 0 chr4 69863470 69863496 -132464851 + AT_rich Low_complexity Low_complexity 1 26 0 1207 128 64 37 chr4 69864422 69864640 -132463707 - AluSg/x SINE Alu -9 303 80 268 80 0 40 chr4 69864886 69864936 -132463411 + (GAAA)n Simple_repeat Simple_repeat 3 50 0 204 156 16 31 chr4 69865453 69865517 -132462830 + GA-rich Low_complexity Low_complexity 2 64 0 279 238 12 62 chr4 69868113 69868193 -132460154 + MER58A DNA MER1_type 2 77 -30 609 283 82 0 chr4 69868496 69868680 -132459667 + MER69 DNA AcHobo 469 667 -559 326 198 66 33 chr4 69869052 69869143 -132459204 + MER69 DNA AcHobo 2216 2309 -217 198 337 84 12 chr4 69869787 69869870 -132458477 - MIR SINE MIR -116 146 58 25 0 0 0 chr4 69871274 69871299 -132457048 + AT_rich Low_complexity Low_complexity 1 25 0 237 33 0 0 chr4 69871595 69871625 -132456722 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 403 326 8 16 chr4 69872141 69872270 -132456077 + L1MA9 LINE L1 1370 1497 -5999 1387 241 51 29 chr4 69872278 69873056 -132455291 + L1MA9 LINE L1 3014 3817 -3748 * 15174 224 25 14 chr4 69873054 69874536 -132453811 - L1PA15 LINE L1 -6 6810 5346 1776 138 41 0 chr4 69874536 69874840 -132453507 - AluSg SINE Alu 0 317 3 15174 224 25 14 chr4 69874840 69878895 -132449452 - L1PA15 LINE L1 -1470 5346 1201 640 175 102 44 chr4 69878971 69879108 -132449239 - LTR36 LTR ERV1 0 611 467 8237 236 43 18 chr4 69879129 69882354 -132445993 + L1MA9 LINE L1 3836 7195 -536 186 43 0 0 chr4 69882378 69882401 -132445946 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 2186 187 13 47 chr4 69882685 69883219 -132445128 + L1MA9 LINE L1 7216 7731 0 25 0 0 0 chr4 69884523 69884548 -132443799 + AT_rich Low_complexity Low_complexity 1 25 0 1836 232 43 92 chr4 69886426 69887029 -132441318 - MLT1E LTR MaLR 0 593 21 2397 152 15 5 chr4 69887029 69887430 -132440917 - MER84 LTR ERVI 0 507 103 1968 150 42 31 chr4 69887457 69887817 -132440530 + THE1B LTR MaLR 1 364 0 1422 172 0 0 chr4 69887842 69888074 -132440273 - AluSg/x SINE Alu -12 300 69 2004 132 20 23 chr4 69888074 69888416 -132439931 + THE1C LTR MaLR 35 375 0 704 139 0 0 chr4 69888416 69888524 -132439823 - MER84 LTR ERVI -399 108 1 313 282 36 0 chr4 69888764 69888874 -132439473 - L1MB4 LINE L1 -1 6179 6066 294 221 8 41 chr4 69889537 69889659 -132438688 + (TA)n Simple_repeat Simple_repeat 2 119 0 1918 82 60 30 chr4 69889741 69890009 -132438338 - AluY SINE Alu -17 294 19 982 120 0 0 chr4 69890009 69890151 -132438196 - MLT2A1 LTR ERVL -302 142 1 298 114 0 0 chr4 69890151 69890195 -132438152 - HERVL-A1 LTR ERVL 0 5654 5611 * 3216 71 117 21 chr4 69890191 69890254 -132438093 - HERVL-A1 LTR ERVL -144 5510 5454 2196 107 3 0 chr4 69890254 69890554 -132437793 + AluSp SINE Alu 1 301 -12 3216 71 117 21 chr4 69890554 69890969 -132437378 - HERVL-A1 LTR ERVL -200 5454 4986 * 31298 85 10 3 chr4 69890966 69895566 -132432781 - HERVL-A1 LTR ERVL -936 4718 1 436 72 29 0 chr4 69895601 69895670 -132432677 + (TA)n Simple_repeat Simple_repeat 2 72 0 998 103 55 0 chr4 69895673 69895818 -132432529 - MLT2A1 LTR ERVL -287 157 5 3002 145 33 8 chr4 69895822 69896332 -132432015 + MER41B LTR ERV1 113 635 0 186 103 0 0 chr4 69896339 69896368 -132431979 + (CA)n Simple_repeat Simple_repeat 2 30 0 300 186 0 0 chr4 69896371 69896430 -132431917 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 1120 196 103 34 chr4 69896531 69896852 -132431495 - MER2 DNA MER2_type -1 343 1 285 146 0 0 chr4 69896854 69896902 -132431445 + (TG)n Simple_repeat Simple_repeat 2 49 0 351 0 0 0 chr4 69898009 69898048 -132430299 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 252 86 0 0 chr4 69898330 69898365 -132429982 + (T)n Simple_repeat Simple_repeat 1 35 0 352 105 0 0 chr4 69899129 69899186 -132429161 - Alu SINE Alu -244 57 1 300 351 84 36 chr4 69899743 69900301 -132428046 + ERVL LTR ERVL 4744 5328 -436 593 303 145 0 chr4 69900534 69900768 -132427579 + LTR16A LTR ERVL 82 349 -101 213 321 113 19 chr4 69902570 69902676 -132425671 - L2 LINE L2 -3 3310 3195 39 60 0 0 chr4 69903013 69903080 -132425267 + AT_rich Low_complexity Low_complexity 1 67 0 1154 247 14 68 chr4 69903205 69903451 -132424896 - MLT1A1 LTR MaLR 0 365 144 2341 158 41 2 chr4 69903451 69903863 -132424484 - MSTA LTR MaLR 0 428 1 1154 247 14 68 chr4 69903863 69903981 -132424366 - MLT1A1 LTR MaLR -221 144 21 389 290 19 0 chr4 69903989 69904096 -132424251 - MLT1A1 LTR MaLR -69 296 188 180 371 0 16 chr4 69904112 69904174 -132424173 - MIR SINE MIR -162 100 40 180 77 0 0 chr4 69904215 69904241 -132424106 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 32 26 0 0 chr4 69904742 69904781 -132423566 + AT_rich Low_complexity Low_complexity 1 39 0 2225 67 0 20 chr4 69905205 69905525 -132422822 + AluY SINE Alu 1 311 0 2108 131 48 31 chr4 69906887 69907245 -132421102 + THE1B LTR MaLR 1 364 0 9510 134 27 37 chr4 69907245 69908841 -132419506 + THE1B-int LTR MaLR 1 1580 0 1918 135 75 31 chr4 69908841 69909190 -132419157 + THE1B LTR MaLR 1 364 0 241 245 0 0 chr4 69909734 69909787 -132418560 + MER5A DNA MER1_type 136 188 -1 644 225 80 119 chr4 69909840 69910192 -132418155 + MLT1C LTR MaLR 55 390 0 2198 122 0 3 chr4 69910276 69910588 -132417759 - AluSp SINE Alu -2 311 1 300 351 84 36 chr4 69911145 69911703 -132416644 + ERVL LTR ERVL 4744 5328 -436 593 303 145 0 chr4 69911936 69912170 -132416177 + LTR16A LTR ERVL 82 349 -101 916 234 33 14 chr4 69913297 69913511 -132414836 + MER20 DNA MER1_type 1 218 -1 26 64 0 0 chr4 69914093 69914140 -132414207 + AT_rich Low_complexity Low_complexity 1 47 0 24 53 0 0 chr4 69914151 69914189 -132414158 + AT_rich Low_complexity Low_complexity 1 38 0 353 332 48 18 chr4 69914333 69914664 -132413683 - L1MEc LINE L1 -4621 1775 1435 * 943 197 16 13 chr4 69914660 69914693 -132413654 - L1PA16 LINE L1 0 6168 6137 2062 133 0 0 chr4 69914693 69914987 -132413360 - AluSq SINE Alu -15 298 5 943 197 16 13 chr4 69914987 69915621 -132412726 - L1PA16 LINE L1 -31 6137 5455 * 3017 89 45 4 chr4 69915617 69916151 -132412196 + L1PA16 LINE L1 4930 5475 -679 26588 32 1 0 chr4 69916152 69920337 -132408010 + L1PA4 LINE L1 1958 6147 -8 273 178 22 0 chr4 69920365 69920410 -132407937 + LTR16A1 LTR ERVL 74 119 -338 261 292 15 0 chr4 69920447 69920512 -132407835 + MLT1J LTR MaLR 292 357 -154 5038 80 1 6 chr4 69920519 69921208 -132407139 + L1PA8 LINE L1 5476 6161 -11 557 110 181 55 chr4 69921208 69921297 -132407050 - L1P4 LINE L1 -693 5473 5362 1558 209 3 7 chr4 69921297 69921603 -132406744 - AluJb SINE Alu -4 308 4 557 110 181 55 chr4 69921603 69921640 -132406707 - L1P4 LINE L1 -804 5362 5331 620 227 13 0 chr4 69921657 69921807 -132406540 - L1P4 LINE L1 -928 5218 5067 565 311 66 77 chr4 69921813 69922282 -132406065 - L1M4c LINE L1 -4929 1455 992 31 0 0 0 chr4 69922526 69922557 -132405790 + AT_rich Low_complexity Low_complexity 1 31 0 6260 44 0 3 chr4 69922557 69923322 -132405025 - L1PA5 LINE L1 -8 6146 5384 2249 29 4 0 chr4 69923319 69923591 -132404756 + L1P LINE L1 3737 4009 -2137 * 870 254 74 40 chr4 69923850 69924294 -132404053 + L1MC4 LINE L1 5548 6006 -1802 2552 269 71 51 chr4 69924326 69926052 -132402295 + L1MC4 LINE L1 6106 7708 -100 1338 241 17 23 chr4 69926084 69926433 -132401914 + MLT2C1 LTR ERVL 3 349 -48 192 135 0 0 chr4 69926433 69926470 -132401877 + (TC)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr4 69926614 69926635 -132401712 + AT_rich Low_complexity Low_complexity 1 21 0 181 258 11 11 chr4 69926682 69926771 -132401576 + (TA)n Simple_repeat Simple_repeat 1 89 0 1945 101 11 0 chr4 69926816 69927102 -132401245 - L1PA13 LINE L1 0 6163 5875 206 128 43 0 chr4 69927321 69927368 -132400979 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 298 212 30 10 chr4 69928267 69928366 -132399981 + (TA)n Simple_repeat Simple_repeat 2 102 0 324 83 0 0 chr4 69929765 69929813 -132398534 + (TG)n Simple_repeat Simple_repeat 1 48 0 300 102 0 0 chr4 69929815 69929864 -132398483 + (GA)n Simple_repeat Simple_repeat 2 50 0 21 36 0 0 chr4 69930280 69930308 -132398039 + AT_rich Low_complexity Low_complexity 1 28 0 185 182 18 0 chr4 69930450 69930505 -132397842 + (TA)n Simple_repeat Simple_repeat 1 56 0 347 327 42 70 chr4 69930959 69931271 -132397076 + L1ME LINE L1 5517 5819 -302 246 323 31 31 chr4 69931710 69931806 -132396541 - MIR SINE MIR -147 115 20 361 315 113 27 chr4 69932253 69932475 -132395872 + MIR SINE MIR 1 241 -21 296 366 49 24 chr4 69932496 69932701 -132395646 + L2 LINE L2 2873 3082 -190 281 321 112 0 chr4 69933297 69933493 -132394854 + L1ME LINE L1 5514 5731 -390 345 326 34 55 chr4 69933880 69934116 -132394231 + L1ME LINE L1 232 462 -5608 438 145 53 0 chr4 69934124 69934200 -132394147 + L1P4 LINE L1 5707 5786 -379 226 129 0 0 chr4 69934202 69934233 -132394114 + AluJb SINE Alu 3 33 -269 1667 150 25 0 chr4 69934289 69934563 -132393784 + AluJb SINE Alu 29 309 -3 211 27 27 27 chr4 69934569 69934606 -132393741 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 998 99 0 0 chr4 69934608 69934739 -132393608 + AluSq SINE Alu 39 169 -144 2664 245 25 2 chr4 69935138 69935774 -132392573 - MER82 DNA MER2_type -1 652 2 26 30 0 0 chr4 69935931 69935964 -132392383 + AT_rich Low_complexity Low_complexity 1 33 0 1009 288 24 16 chr4 69936424 69936806 -132391541 - L1ME3A LINE L1 -219 5951 5567 303 200 13 0 chr4 69936850 69936925 -132391422 - L1ME3A LINE L1 -715 5449 5374 369 298 44 13 chr4 69936988 69937146 -132391201 - L1ME3A LINE L1 -832 5314 5152 22 88 0 0 chr4 69937146 69937203 -132391144 + AT_rich Low_complexity Low_complexity 1 57 0 249 296 118 7 chr4 69937318 69937453 -132390894 - L1ME3A LINE L1 -1116 5030 4881 440 220 60 16 chr4 69937702 69937884 -132390463 - L1ME3A LINE L1 -1542 4604 4415 216 348 106 50 chr4 69937953 69938114 -132390233 + L2 LINE L2 3096 3265 -7 7189 52 1 4 chr4 69938178 69939391 -132388956 + L1PA5 LINE L1 4945 6154 0 703 347 77 52 chr4 69939440 69939698 -132388649 + L2 LINE L2 2446 2696 -617 1681 203 25 11 chr4 69939698 69940058 -132388289 - MLT1A1 LTR MaLR 0 365 1 703 347 77 52 chr4 69940058 69940496 -132387851 + L2 LINE L2 2696 3151 -162 321 272 48 41 chr4 69940547 69940694 -132387653 + L2 LINE L2 3149 3296 -17 23 54 0 0 chr4 69940728 69940765 -132387582 + AT_rich Low_complexity Low_complexity 1 37 0 1975 133 13 7 chr4 69940905 69941207 -132387140 + AluSq SINE Alu 1 304 -9 860 256 99 69 chr4 69941753 69942240 -132386107 - MLT1H LTR MaLR -4 545 1 773 232 32 16 chr4 69943069 69943254 -132385093 - MER5A DNA MER1_type 0 189 2 21 0 0 0 chr4 69943261 69943282 -132385065 + AT_rich Low_complexity Low_complexity 1 21 0 253 312 32 2 chr4 69943418 69943584 -132384763 - LTR67 LTR ERVL -344 213 6 2191 102 3 3 chr4 69944517 69944821 -132383526 + AluSp SINE Alu 1 304 -9 215 296 0 19 chr4 69945127 69945181 -132383166 + MIR SINE MIR 206 258 -4 29 47 0 0 chr4 69946513 69946556 -132381791 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr4 69946661 69946689 -132381658 + AT_rich Low_complexity Low_complexity 1 28 0 1582 172 164 16 chr4 69946944 69947317 -132381030 - MSTA LTR MaLR 0 428 1 227 333 35 0 chr4 69947514 69947601 -132380746 + CT-rich Low_complexity Low_complexity 3 92 0 29 0 0 0 chr4 69947720 69947749 -132380598 + AT_rich Low_complexity Low_complexity 1 29 0 31 26 0 0 chr4 69947982 69948020 -132380327 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr4 69948077 69948106 -132380241 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 69948219 69948240 -132380107 + AT_rich Low_complexity Low_complexity 1 21 0 1223 365 90 35 chr4 69948354 69949583 -132378764 + ERVL LTR ERVL 280 1576 -3420 2365 220 41 3 chr4 69949675 69950266 -132378081 + L1MB3 LINE L1 4461 5073 -1073 2303 155 3 0 chr4 69950269 69950644 -132377703 - L1PA16 LINE L1 -3 6163 5788 1997 107 34 56 chr4 69950645 69951000 -132377347 + THE1B LTR MaLR 2 348 -16 24228 152 51 52 chr4 69951001 69953565 -132374782 + LOR1b-int LTR ERV1 29 2595 -5525 1896 124 32 7 chr4 69953565 69953848 -132374499 + AluSg SINE Alu 2 291 -19 24228 152 51 52 chr4 69953848 69956789 -132371558 + LOR1b-int LTR ERV1 2595 5526 -2594 1877 84 36 7 chr4 69956767 69957042 -132371305 + LOR1b-int LTR ERV1 5782 6064 -2056 * 603 136 0 0 chr4 69957041 69957129 -132371218 + LOR1b-int LTR ERV1 8030 8117 -3 * 309 68 0 0 chr4 69957158 69957202 -132371145 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1762 214 33 23 chr4 69957206 69957598 -132370749 + LOR1b LTR ERV1 66 461 0 1698 178 63 27 chr4 69957631 69958167 -132370180 + L1MB3 LINE L1 5100 5648 -535 1188 213 14 4 chr4 69958185 69958462 -132369885 + L1MB3 LINE L1 5901 6180 -3 1386 298 50 45 chr4 69958483 69959130 -132369217 + ERVL LTR ERVL 1726 2375 -2621 3933 138 63 32 chr4 69959192 69959934 -132368413 + LTR1 LTR ERV1 13 777 -8 483 285 22 1 chr4 69959948 69960097 -132368250 + ERVL LTR ERVL 2384 2545 -2451 648 379 8 0 chr4 69960167 69960428 -132367919 + ERVL LTR ERVL 4152 4414 -1350 581 338 50 26 chr4 69960865 69961205 -132367142 + LTR16B LTR ERVL 93 440 -24 393 260 17 85 chr4 69961272 69961449 -132366898 - L1MA9 LINE L1 -46 6266 6102 1832 200 110 60 chr4 69961449 69962154 -132366193 + LTR1B LTR ERV1 1 981 -39 3286 224 25 24 chr4 69962246 69963089 -132365258 - L1MA9 LINE L1 -210 6102 5259 2450 227 27 14 chr4 69963098 69963732 -132364615 - L1MA9 LINE L1 -858 5288 4647 3243 211 35 30 chr4 69963732 69964249 -132364098 + L1 LINE L1 3797 4321 -1825 2086 130 0 0 chr4 69964249 69964542 -132363805 + AluSx SINE Alu 7 299 -13 3243 211 35 30 chr4 69964542 69964860 -132363487 + L1 LINE L1 4321 4636 -1510 2042 95 3 7 chr4 69965388 69965682 -132362665 - AluY SINE Alu -17 294 2 562 226 85 12 chr4 69969535 69969699 -132358648 - L1MA10 LINE L1 -9 6325 6150 1078 221 143 72 chr4 69969793 69970304 -132358043 - MER61E LTR ERV1 -22 547 1 612 178 116 0 chr4 69970314 69970443 -132357904 - L1MB1 LINE L1 -100 6089 5946 742 353 23 38 chr4 69970451 69970845 -132357502 - LTR16B LTR ERVL 0 464 77 3295 180 86 9 chr4 69971456 69972110 -132356237 + MER44D DNA MER2_type 1 704 -1 252 333 0 30 chr4 69972238 69972373 -132355974 + MLT1H LTR MaLR 102 232 -317 204 125 0 0 chr4 69973414 69973446 -132354901 + (TATG)n Simple_repeat Simple_repeat 2 33 0 345 336 16 0 chr4 69974810 69974932 -132353415 + CT-rich Low_complexity Low_complexity 2 125 0 3231 104 53 6 chr4 69975477 69975965 -132352382 - MER9 LTR ERVK 0 511 1 1475 110 58 142 chr4 69975965 69976274 -132352073 + AluSq SINE Alu 14 296 -17 21 57 0 0 chr4 69976338 69976373 -132351974 + AT_rich Low_complexity Low_complexity 1 35 0 2409 102 8 30 chr4 69976401 69976639 -132351708 - THE1A LTR MaLR 0 355 126 2193 117 0 0 chr4 69976639 69976937 -132351410 + AluSx SINE Alu 1 298 -14 2409 102 8 30 chr4 69976937 69977059 -132351288 - THE1A LTR MaLR -229 126 3 346 302 97 54 chr4 69977431 69977762 -132350585 - L1 LINE L1 -2527 3619 3275 2742 201 37 113 chr4 69977769 69978740 -132349607 - L1MA10 LINE L1 -52 6282 5386 791 215 44 13 chr4 69978866 69979094 -132349253 - L1MA10 LINE L1 -746 5400 5166 * 2327 210 32 58 chr4 69979093 69979526 -132348821 + L1 LINE L1 4554 4966 -1180 1202 221 63 35 chr4 69979526 69979640 -132348707 + AluJb SINE Alu 3 112 -190 203 0 0 36 chr4 69979640 69979668 -132348679 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1202 221 63 35 chr4 69979668 69979838 -132348509 + AluJb SINE Alu 112 295 -7 2327 210 32 58 chr4 69979838 69980057 -132348290 + L1 LINE L1 4966 5189 -957 22 0 0 0 chr4 69981271 69981293 -132347054 + AT_rich Low_complexity Low_complexity 1 22 0 199 354 42 62 chr4 69981525 69981669 -132346678 - L2 LINE L2 -199 3073 2933 363 135 0 15 chr4 69981901 69981973 -132346374 + MER41A LTR ERV1 386 453 -101 231 61 0 61 chr4 69981994 69982043 -132346304 + (GGGAGA)n Simple_repeat Simple_repeat 3 48 0 545 319 16 81 chr4 69983745 69984068 -132344279 + L2 LINE L2 2586 2887 -427 490 330 143 13 chr4 69985272 69985587 -132342760 - L2 LINE L2 -20 3293 2938 2143 97 3 3 chr4 69985590 69985898 -132342449 + AluY SINE Alu 4 311 0 992 234 0 5 chr4 69985939 69986140 -132342207 + MER58A DNA MER1_type 10 209 -15 1100 319 81 70 chr4 69986210 69987271 -132341076 - L2 LINE L2 -542 2772 1700 2561 173 34 8 chr4 69987290 69987433 -132340914 - L1MA9 LINE L1 -5 6307 6169 300 111 0 0 chr4 69987433 69987478 -132340869 + (TG)n Simple_repeat Simple_repeat 1 45 0 2561 173 34 8 chr4 69987478 69987866 -132340481 - L1MA9 LINE L1 -143 6169 5762 284 158 12 110 chr4 69987866 69987948 -132340399 + MLT1A1 LTR MaLR 1 74 -291 1299 209 4 0 chr4 69987950 69988213 -132340134 - L1 LINE L1 -2027 5079 4816 1877 202 17 14 chr4 69988215 69988272 -132340075 - MLT1A1 LTR MaLR -7 358 303 2240 74 0 3 chr4 69988272 69988601 -132339746 + AluY SINE Alu 1 328 0 1877 202 17 14 chr4 69988601 69988899 -132339448 - MLT1A1 LTR MaLR -62 303 1 5875 237 75 38 chr4 69988899 69990571 -132337776 - MLT1A1-int LTR MaLR 0 1735 2 1331 249 31 17 chr4 69990577 69990935 -132337412 - MLT1A1 LTR MaLR -2 363 1 3719 248 28 12 chr4 69990939 69992084 -132336263 - L1 LINE L1 -2963 4143 2976 1405 259 105 88 chr4 69992091 69993012 -132335335 - L1 LINE L1 -5154 1876 1 223 395 29 5 chr4 69993039 69993249 -132335098 - L2 LINE L2 -1608 1706 1492 396 273 58 52 chr4 69993540 69993694 -132334653 + MLT1I LTR MaLR 38 192 -217 546 323 78 16 chr4 69993932 69994251 -132334096 - L2 LINE L2 -2261 1053 715 1113 249 36 39 chr4 69996034 69996405 -132331942 + MLT2C1 LTR ERVL 1 632 -31 632 260 42 5 chr4 69996923 69997115 -132331232 + MER3 DNA MER1_type 5 203 -6 22 35 0 0 chr4 69997792 69997821 -132330526 + AT_rich Low_complexity Low_complexity 1 29 0 985 208 69 22 chr4 69999343 69999574 -132328773 - L1MDa LINE L1 -6279 261 20 309 232 81 40 chr4 70001661 70001760 -132326587 - L2 LINE L2 -3 3310 3208 337 246 123 64 chr4 70001844 70002047 -132326300 - LTR37B LTR ERV1 -57 411 197 35 0 0 0 chr4 70003286 70003321 -132325026 + AT_rich Low_complexity Low_complexity 1 35 0 305 309 30 30 chr4 70003796 70003961 -132324386 - L1ME4a LINE L1 0 6121 5957 * 413 268 59 44 chr4 70003937 70004209 -132324138 - HAL1b LINE L1 -140 1208 933 347 255 85 72 chr4 70004258 70004493 -132323854 - HAL1b LINE L1 -508 840 603 446 224 17 22 chr4 70004497 70004676 -132323671 + CT-rich Low_complexity Low_complexity 3 180 0 702 294 70 18 chr4 70004701 70005086 -132323261 - HAL1b LINE L1 -739 609 205 558 289 56 45 chr4 70005303 70005590 -132322757 + L1ME3A LINE L1 5783 6072 -98 21 36 0 0 chr4 70005774 70005802 -132322545 + AT_rich Low_complexity Low_complexity 1 28 0 475 323 50 0 chr4 70006313 70006481 -132321866 - MIR SINE MIR -41 221 47 218 365 106 0 chr4 70007748 70007833 -132320514 - L2 LINE L2 -42 3230 3137 924 242 51 32 chr4 70008128 70008404 -132319943 - MSTD LTR MaLR -4 392 123 1861 113 3 25 chr4 70008404 70008688 -132319659 + AluSg SINE Alu 1 278 -32 207 0 0 0 chr4 70008690 70008713 -132319634 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 924 242 51 32 chr4 70008713 70008791 -132319556 - MSTD LTR MaLR -273 123 4 4154 218 33 26 chr4 70010586 70011413 -132316934 - L1MB8 LINE L1 -9 6980 6160 2531 65 0 0 chr4 70011413 70011722 -132316625 - AluY SINE Alu -2 309 1 4154 218 33 26 chr4 70011722 70012920 -132315427 - L1MB8 LINE L1 -829 6160 4933 23 68 0 0 chr4 70012929 70012973 -132315374 + AT_rich Low_complexity Low_complexity 1 44 0 4911 263 58 34 chr4 70012985 70015251 -132313096 - L1MB8 LINE L1 -4633 2326 7 259 221 84 21 chr4 70015484 70015579 -132312768 - MIR SINE MIR -39 223 123 264 318 121 30 chr4 70015594 70015792 -132312555 + LTR33 LTR ERVL 1 216 -305 1291 105 179 35 chr4 70016056 70016313 -132312034 - AluSg1 SINE Alu -14 295 2 23 0 0 0 chr4 70017195 70017218 -132311129 + AT_rich Low_complexity Low_complexity 1 23 0 616 284 94 10 chr4 70018202 70018403 -132309944 + MER20 DNA MER1_type 2 219 0 1801 292 39 38 chr4 70018483 70019474 -132308873 + L1MEc LINE L1 1050 2001 -4214 2492 50 0 3 chr4 70019474 70019776 -132308571 + AluY SINE Alu 1 301 -10 1801 292 39 38 chr4 70019776 70020378 -132307969 + L1MEc LINE L1 2001 2601 -3614 25 51 0 0 chr4 70020383 70020422 -132307925 + AT_rich Low_complexity Low_complexity 1 39 0 390 273 27 75 chr4 70020702 70020889 -132307458 + MER112 DNA MER1_type 2 179 -81 23 0 0 0 chr4 70020894 70020917 -132307430 + AT_rich Low_complexity Low_complexity 1 23 0 525 303 120 6 chr4 70021537 70021712 -132306635 - MIR SINE MIR -16 246 52 2152 133 0 0 chr4 70021809 70022102 -132306245 - AluSx SINE Alu -16 296 4 254 221 130 13 chr4 70022122 70022199 -132306148 - MIR SINE MIR -173 89 4 430 324 29 59 chr4 70022211 70022449 -132305898 - MIR SINE MIR -19 243 13 22 35 0 0 chr4 70022875 70022904 -132305443 + AT_rich Low_complexity Low_complexity 1 29 0 297 240 0 77 chr4 70023173 70023277 -132305070 + MIR SINE MIR 7 102 -160 2167 123 0 3 chr4 70023404 70023713 -132304634 - AluSc SINE Alu 0 309 2 1921 161 7 0 chr4 70023717 70024119 -132304228 - AluSx SINE Alu 0 408 5 24 0 0 0 chr4 70025288 70025312 -132303035 + AT_rich Low_complexity Low_complexity 1 24 0 3456 87 6 29 chr4 70025464 70025984 -132302363 - L1PA8 LINE L1 -3 6169 5662 403 392 19 5 chr4 70027624 70027833 -132300514 - MIR SINE MIR -10 252 41 22 0 0 0 chr4 70029145 70029167 -132299180 + AT_rich Low_complexity Low_complexity 1 22 0 577 203 0 49 chr4 70029285 70029428 -132298919 + L1PB4 LINE L1 6019 6154 -2 274 169 14 14 chr4 70029578 70029649 -132298698 + (TA)n Simple_repeat Simple_repeat 2 72 0 450 90 0 0 chr4 70029656 70029723 -132298624 - L1PA13 LINE L1 -19 6144 6078 222 37 0 0 chr4 70029857 70029884 -132298463 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2066 115 7 0 chr4 70029887 70030173 -132298174 - AluSx SINE Alu -24 288 1 1531 203 0 4 chr4 70030374 70030652 -132297695 - MLT1D LTR MaLR 0 505 245 445 175 9 9 chr4 70030655 70030769 -132297578 + GA-rich Low_complexity Low_complexity 3 116 0 215 202 83 0 chr4 70031099 70031208 -132297139 + (TA)n Simple_repeat Simple_repeat 2 119 0 1041 300 108 24 chr4 70031208 70031959 -132296388 + L1ME2 LINE L1 5266 6079 -85 347 273 64 58 chr4 70032275 70032611 -132295736 - L1 LINE L1 -1945 4201 3859 361 325 94 22 chr4 70032621 70032898 -132295449 - L1MEc LINE L1 -4971 1425 1129 308 246 205 0 chr4 70032982 70033104 -132295243 - L1MEc LINE L1 -5500 896 750 473 0 0 17 chr4 70033281 70033339 -132295008 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 238 236 136 0 chr4 70034428 70034538 -132293809 - L1 LINE L1 -2635 3511 3387 1389 188 117 3 chr4 70035263 70035571 -132292776 - MLT1A1 LTR MaLR -2 363 21 1974 228 102 94 chr4 70036893 70037321 -132291026 - L1MD3 LINE L1 -6 7989 7566 3077 111 28 61 chr4 70037321 70037898 -132290449 - L1MA3 LINE L1 0 6305 5748 1974 228 102 94 chr4 70037898 70038039 -132290308 - L1MD3 LINE L1 -429 7566 7428 258 250 0 83 chr4 70038039 70038135 -132290212 - MLT1D LTR MaLR -442 125 38 1974 228 102 94 chr4 70038135 70038927 -132289420 - L1MD3 LINE L1 -567 7428 6343 421 218 0 0 chr4 70038927 70039005 -132289342 - MER58 DNA MER1_type 0 2420 2343 1889 151 0 7 chr4 70039061 70039346 -132289001 + AluSg SINE Alu 1 283 -27 207 0 0 0 chr4 70039376 70039399 -132288948 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 276 77 0 0 chr4 70039400 70039439 -132288908 + (TG)n Simple_repeat Simple_repeat 2 40 0 294 262 83 0 chr4 70039449 70039533 -132288814 - MER58 DNA MER1_type -247 94 4 319 227 92 8 chr4 70039539 70039658 -132288689 - L1MC3 LINE L1 -1431 6354 6226 461 130 39 0 chr4 70040191 70040268 -132288079 - L1MB1 LINE L1 -251 5932 5853 1203 188 18 0 chr4 70040268 70040495 -132287852 + L1MB1 LINE L1 5933 6165 -3 304 264 125 15 chr4 70040650 70040855 -132287492 + MLT1E3 LTR MaLR 1 221 -403 987 234 26 30 chr4 70040973 70041242 -132287105 + MLT1E3 LTR MaLR 357 624 0 492 244 138 6 chr4 70042039 70042199 -132286148 + MLT1G1 LTR MaLR 3 183 -412 336 240 20 30 chr4 70042427 70042527 -132285820 + MLT1G1 LTR MaLR 460 558 -37 913 305 69 40 chr4 70042537 70042986 -132285361 + L2 LINE L2 1471 1932 -1382 22 56 0 0 chr4 70042990 70043026 -132285321 + AT_rich Low_complexity Low_complexity 1 36 0 751 322 51 42 chr4 70043094 70043821 -132284526 + L2 LINE L2 2580 3313 0 263 308 33 11 chr4 70044502 70044593 -132283754 - MIR SINE MIR -109 153 61 344 229 130 16 chr4 70044926 70044994 -132283353 - L1ME LINE L1 -5142 928 869 225 83 0 0 chr4 70044994 70045030 -132283317 + (TA)n Simple_repeat Simple_repeat 1 36 0 344 229 130 16 chr4 70045030 70045153 -132283194 - L1ME LINE L1 -5201 869 715 541 280 193 49 chr4 70045186 70045819 -132282528 + L2 LINE L2 2593 3305 -8 22 0 0 0 chr4 70047337 70047359 -132280988 + AT_rich Low_complexity Low_complexity 1 22 0 1746 139 31 11 chr4 70047401 70047688 -132280659 - AluSx SINE Alu -8 304 12 5095 42 11 3 chr4 70047712 70048348 -132279999 - L1PA5 LINE L1 0 6154 5514 259 316 53 18 chr4 70049149 70049263 -132279084 - MLT1H LTR MaLR -429 120 3 5229 216 53 20 chr4 70050039 70052233 -132276114 + L1PB4 LINE L1 3650 5941 -215 2550 123 0 3 chr4 70052233 70052598 -132275749 + THE1B LTR MaLR 1 364 0 5229 216 53 20 chr4 70052598 70052796 -132275551 + L1PB4 LINE L1 5941 6131 -25 2158 86 20 26 chr4 70052770 70053119 -132275228 + L1P LINE L1 5036 5382 -764 * 6763 69 6 8 chr4 70053225 70054127 -132274220 + L1PA6 LINE L1 5254 6153 -1 28 48 0 0 chr4 70054159 70054201 -132274146 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr4 70054555 70054583 -132273764 + AT_rich Low_complexity Low_complexity 1 28 0 12966 39 0 3 chr4 70054641 70057006 -132271341 + L1PA4 LINE L1 3791 6155 0 21 0 0 0 chr4 70057621 70057642 -132270705 + AT_rich Low_complexity Low_complexity 1 21 0 198 343 61 10 chr4 70057645 70057744 -132270603 - L2 LINE L2 -25 3247 3144 193 329 53 13 chr4 70057881 70057957 -132270390 - L2 LINE L2 -213 3059 2981 225 152 61 61 chr4 70059325 70059391 -132268956 + T-rich Low_complexity Low_complexity 6 71 0 212 57 0 29 chr4 70059519 70059554 -132268793 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 10911 34 3 0 chr4 70059554 70061609 -132266738 - L1PA3 LINE L1 -24 6131 4073 4711 31 0 0 chr4 70061618 70062195 -132266152 - L1PA3 LINE L1 -3498 2648 2072 758 61 0 0 chr4 70062194 70062293 -132266054 + L1PA3 LINE L1 1965 2063 -4083 * 414 261 0 0 chr4 70062429 70062517 -132265830 + L2 LINE L2 3184 3271 -1 1763 313 90 53 chr4 70062815 70063845 -132264502 + L2 LINE L2 2033 3107 -206 3797 130 9 0 chr4 70063845 70064420 -132263927 - L1PA15 LINE L1 -3 6162 5583 1763 313 90 53 chr4 70064420 70064600 -132263747 + L2 LINE L2 3107 3279 -34 21 0 0 0 chr4 70065019 70065040 -132263307 + AT_rich Low_complexity Low_complexity 1 21 0 2092 113 0 0 chr4 70065040 70065324 -132263023 - AluSx SINE Alu -28 284 1 1285 202 94 8 chr4 70065343 70065695 -132262652 - L1MC3 LINE L1 -15 7770 7389 * 1611 280 35 56 chr4 70065688 70066758 -132261589 - L1MCb LINE L1 -4851 1194 570 524 285 43 62 chr4 70066845 70067221 -132261126 - L1MCb LINE L1 -5664 381 53 2306 103 0 0 chr4 70068079 70068390 -132259957 - AluY SINE Alu 0 311 1 2134 123 0 0 chr4 70068858 70069160 -132259187 - AluSc SINE Alu -7 302 1 22 35 0 0 chr4 70069434 70069463 -132258884 + AT_rich Low_complexity Low_complexity 1 29 0 1034 121 0 12 chr4 70069499 70069664 -132258683 - AluSq SINE Alu -16 297 135 3840 144 26 0 chr4 70069705 70070309 -132258038 + L1PA8A LINE L1 88 707 -5168 1854 186 68 18 chr4 70070310 70070707 -132257640 + LTR2B LTR ERV1 74 490 0 24373 156 19 13 chr4 70070707 70076202 -132252145 + L1PA8A LINE L1 854 6445 -1 21 0 0 0 chr4 70077831 70077852 -132250495 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 70078727 70078749 -132249598 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 70078849 70078872 -132249475 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 70080282 70080303 -132248044 + AT_rich Low_complexity Low_complexity 1 21 0 1818 221 29 149 chr4 70080316 70080939 -132247408 + MLT2B3 LTR ERVL 5 552 -2 5255 116 12 27 chr4 70081919 70082782 -132245565 - L1PA13 LINE L1 0 6163 5314 536 305 73 61 chr4 70082964 70083308 -132245039 - MLT1A2 LTR MaLR 0 374 27 24 0 0 0 chr4 70083493 70083517 -132244830 + AT_rich Low_complexity Low_complexity 1 24 0 4682 121 9 5 chr4 70084722 70085468 -132242879 + L1PA14 LINE L1 5413 6161 0 4543 194 49 8 chr4 70086301 70087882 -132240465 - L1PA16 LINE L1 -4 6162 4518 234 344 86 8 chr4 70089718 70089846 -132238501 + MIR SINE MIR 55 192 -70 200 303 67 34 chr4 70089868 70089957 -132238390 - MIR SINE MIR -105 157 66 435 193 147 67 chr4 70089980 70090130 -132238217 - MLT1H LTR MaLR -4 545 384 313 247 22 22 chr4 70090313 70090402 -132237945 - MLT1F LTR MaLR -440 102 14 580 192 0 0 chr4 70090441 70090572 -132237775 - AluSx SINE Alu 0 311 181 * 639 141 0 0 chr4 70090569 70090668 -132237679 - AluSx SINE Alu -207 105 7 267 285 58 66 chr4 70091235 70091372 -132236975 + MIR SINE MIR 125 260 -2 241 224 0 28 chr4 70091418 70091525 -132236822 + CT-rich Low_complexity Low_complexity 3 106 0 180 152 30 0 chr4 70091558 70091591 -132236756 + L2 LINE L2 3277 3310 -3 244 98 0 39 chr4 70092119 70092170 -132236177 + (TTCCC)n Simple_repeat Simple_repeat 3 51 0 21 71 0 0 chr4 70092429 70092471 -132235876 + AT_rich Low_complexity Low_complexity 1 42 0 1756 315 96 33 chr4 70092611 70093596 -132234751 - L2 LINE L2 -227 3086 2033 377 327 82 7 chr4 70093894 70094114 -132234233 - L2 LINE L2 -1 3271 2776 758 61 0 0 chr4 70094118 70094217 -132234130 - L1PA3 LINE L1 -4083 2063 1965 * 26792 38 2 0 chr4 70094216 70098307 -132230040 + L1PA3 LINE L1 2072 6166 0 225 152 61 61 chr4 70098435 70098501 -132229846 + A-rich Low_complexity Low_complexity 6 71 0 193 329 53 13 chr4 70099869 70099945 -132228402 + L2 LINE L2 2981 3059 -213 191 354 61 10 chr4 70100082 70100181 -132228166 + L2 LINE L2 3144 3247 -25 295 241 58 23 chr4 70100687 70100774 -132227573 - MERVL LTR ERVL -660 4825 4736 277 245 128 58 chr4 70100912 70101100 -132227247 - MERVL LTR ERVL -728 4268 4068 966 162 29 48 chr4 70101988 70102198 -132226149 + Tigger7 DNA MER2_type 2163 2368 -119 445 303 114 58 chr4 70102414 70102827 -132225520 + L1ME3A LINE L1 2285 2720 -3426 293 277 29 7 chr4 70102840 70102977 -132225370 + L1ME3A LINE L1 2769 2908 -3238 354 313 58 44 chr4 70103047 70103479 -132224868 + L1ME3A LINE L1 3113 3550 -2596 278 108 216 27 chr4 70103533 70103607 -132224740 + L1MC1 LINE L1 6245 6332 -1 1137 75 0 0 chr4 70103648 70103808 -132224539 - L1PA13 LINE L1 0 6163 6004 538 309 213 13 chr4 70103823 70104510 -132223837 + L1ME3A LINE L1 4450 5273 -873 1159 204 44 106 chr4 70104518 70105251 -132223096 + MER52A LTR ERV1 531 716 -304 1816 188 31 39 chr4 70105356 70105771 -132222576 + MER52A LTR ERV1 1344 1755 0 875 294 62 71 chr4 70105774 70106199 -132222148 + L1ME3A LINE L1 5280 5707 -463 450 53 0 0 chr4 70106199 70106256 -132222091 + (TA)n Simple_repeat Simple_repeat 1 57 0 875 294 62 71 chr4 70106256 70106721 -132221626 + L1ME3A LINE L1 5707 6162 -8 340 275 197 6 chr4 70107083 70107261 -132221086 - L1ME LINE L1 -450 5671 5460 21 0 0 0 chr4 70108110 70108131 -132220216 + AT_rich Low_complexity Low_complexity 1 21 0 288 0 0 0 chr4 70108295 70108327 -132220020 + (TG)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr4 70109156 70109178 -132219169 + AT_rich Low_complexity Low_complexity 1 22 0 2323 101 0 0 chr4 70109266 70109572 -132218775 + AluSg SINE Alu 1 306 -4 372 309 141 48 chr4 70109709 70110276 -132218071 + HAL1 LINE L1 1121 1740 -767 29 84 0 0 chr4 70110590 70110661 -132217686 + AT_rich Low_complexity Low_complexity 1 71 0 264 169 45 39 chr4 70110671 70110849 -132217498 + (TA)n Simple_repeat Simple_repeat 2 180 0 918 253 47 32 chr4 70111635 70111845 -132216502 - L1M4 LINE L1 -659 5525 5320 2152 88 10 7 chr4 70111845 70112141 -132216206 + AluY SINE Alu 1 297 -14 918 253 47 32 chr4 70112141 70112450 -132215897 - L1M4 LINE L1 -864 5320 4988 958 239 22 4 chr4 70112467 70112693 -132215654 - MLT1A1 LTR MaLR -32 333 104 2115 266 70 19 chr4 70112725 70113616 -132214731 - L1M4 LINE L1 -1701 4445 3510 1221 280 32 8 chr4 70113621 70114214 -132214133 - L1M4 LINE L1 -3157 2989 2240 22 0 0 0 chr4 70114462 70114484 -132213863 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr4 70115369 70115398 -132212949 + AT_rich Low_complexity Low_complexity 1 29 0 250 297 36 58 chr4 70116347 70116485 -132211862 + L2 LINE L2 3158 3292 -21 2425 124 8 16 chr4 70116705 70117083 -132211264 + THE1C LTR MaLR 1 375 0 9937 120 31 22 chr4 70117083 70118648 -132209699 + THE1C-int LTR MaLR 1 1580 0 2409 111 33 14 chr4 70118648 70119016 -132209331 + THE1C LTR MaLR 1 375 0 300 262 37 37 chr4 70119210 70119317 -132209030 + MER94 DNA DNA 10 116 -18 290 164 0 16 chr4 70119433 70119494 -132208853 + (CATA)n Simple_repeat Simple_repeat 4 63 0 29 70 0 0 chr4 70120770 70120827 -132207520 + AT_rich Low_complexity Low_complexity 1 57 0 25 0 0 0 chr4 70120933 70120958 -132207389 + AT_rich Low_complexity Low_complexity 1 25 0 22 103 0 0 chr4 70121352 70121430 -132206917 + AT_rich Low_complexity Low_complexity 1 78 0 1966 145 3 3 chr4 70121781 70122085 -132206262 + AluSx SINE Alu 1 304 -8 180 0 0 0 chr4 70122142 70122162 -132206185 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 1975 136 10 0 chr4 70124295 70124604 -132203743 - AluSx SINE Alu 0 312 1 351 0 0 0 chr4 70124694 70124733 -132203614 + (TG)n Simple_repeat Simple_repeat 2 40 0 322 247 25 0 chr4 70124867 70124948 -132203399 - MIR SINE MIR -27 235 153 26 30 0 0 chr4 70125456 70125489 -132202858 + AT_rich Low_complexity Low_complexity 1 33 0 1413 225 32 44 chr4 70125875 70126284 -132202063 - LTR52 LTR ERVL -16 405 2 826 280 28 20 chr4 70126401 70126651 -132201696 - MIR SINE MIR -3 259 8 3815 121 7 46 chr4 70127092 70127772 -132200575 - L1MA4A LINE L1 -6 6297 5644 208 262 76 116 chr4 70128565 70128790 -132199557 - L2 LINE L2 -11 3302 3087 553 388 60 24 chr4 70128877 70129344 -132199003 - L3 LINE CR1 -833 744 261 650 235 0 0 chr4 70129466 70129598 -132198749 - FLAM_C SINE Alu -11 132 1 448 290 142 0 chr4 70129998 70130160 -132198187 - MIR SINE MIR -4 258 74 484 316 58 22 chr4 70131135 70131360 -132196987 - L2 LINE L2 -5 3308 3076 33 0 0 0 chr4 70132010 70132043 -132196304 + AT_rich Low_complexity Low_complexity 1 33 0 338 297 54 46 chr4 70132556 70132795 -132195552 + LTR33A LTR ERVL 243 483 -40 28 29 0 0 chr4 70132956 70132991 -132195356 + AT_rich Low_complexity Low_complexity 1 35 0 318 383 19 6 chr4 70133486 70133648 -132194699 + HAL1b LINE L1 494 657 -691 2115 55 42 62 chr4 70133792 70134100 -132194247 + AluY SINE Alu 1 302 -9 414 340 26 26 chr4 70134540 70134731 -132193616 + MIR SINE MIR 5 195 -67 234 116 0 0 chr4 70135279 70135322 -132193025 + (CA)n Simple_repeat Simple_repeat 1 43 0 21 71 0 0 chr4 70135854 70135896 -132192451 + AT_rich Low_complexity Low_complexity 1 42 0 22 94 0 0 chr4 70136039 70136103 -132192244 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr4 70137222 70137243 -132191104 + AT_rich Low_complexity Low_complexity 1 21 0 206 340 0 64 chr4 70137316 70137410 -132190937 - L2 LINE L2 -1 3312 3225 1737 203 25 22 chr4 70137540 70137904 -132190443 + MLT1A1 LTR MaLR 1 365 0 30 69 0 0 chr4 70138328 70138386 -132189961 + AT_rich Low_complexity Low_complexity 1 58 0 1264 291 21 13 chr4 70141251 70141726 -132186621 + Charlie4a DNA MER1_type 10 488 -20 1504 244 126 20 chr4 70142250 70142980 -132185367 + Charlie7 DNA MER1_type 1599 2405 -207 21 0 0 0 chr4 70143121 70143142 -132185205 + AT_rich Low_complexity Low_complexity 1 21 0 1889 135 0 35 chr4 70143347 70143658 -132184689 + AluSx SINE Alu 1 300 -12 23 54 0 0 chr4 70145157 70145194 -132183153 + AT_rich Low_complexity Low_complexity 1 37 0 433 285 78 39 chr4 70145407 70145618 -132182729 + MLT1I LTR MaLR 99 325 -84 2173 67 3 51 chr4 70145618 70145931 -132182416 + AluY SINE Alu 3 300 -11 433 285 78 39 chr4 70145931 70146000 -132182347 + MLT1I LTR MaLR 325 390 -19 222 306 161 8 chr4 70146234 70146358 -132181989 + MIR SINE MIR 72 214 -48 205 200 0 0 chr4 70146394 70146454 -132181893 + (TA)n Simple_repeat Simple_repeat 1 60 0 724 178 7 0 chr4 70146510 70146645 -132181702 - L1PA16 LINE L1 -14 6152 6017 1865 112 4 32 chr4 70146806 70147108 -132181239 - AluSq SINE Alu 0 308 15 721 85 19 0 chr4 70147108 70147214 -132181133 + AluY SINE Alu 188 295 -16 3215 176 91 5 chr4 70147219 70147877 -132180470 - MER6 DNA MER2_type -150 715 1 239 313 112 30 chr4 70147987 70148121 -132180226 + MIR3 SINE MIR 23 167 -41 24 67 0 0 chr4 70148329 70148374 -132179973 + AT_rich Low_complexity Low_complexity 1 45 0 292 81 7 96 chr4 70150115 70150251 -132178096 + (TA)n Simple_repeat Simple_repeat 2 125 0 365 249 65 30 chr4 70150284 70150453 -132177894 + (CATGT)n Simple_repeat Simple_repeat 1 175 0 301 206 20 59 chr4 70150455 70150557 -132177790 - L1MC4 LINE L1 -1333 6709 6612 209 133 17 50 chr4 70150559 70150619 -132177728 + (TA)n Simple_repeat Simple_repeat 2 59 0 1553 207 3 3 chr4 70151437 70151732 -132176615 - AluJo SINE Alu -11 301 7 483 158 3 3 chr4 70152203 70152299 -132176048 - L1M2 LINE L1 -528 5772 5677 722 169 0 0 chr4 70152299 70152423 -132175924 + AluSp/q SINE Alu 181 304 -9 1133 119 16 5 chr4 70152423 70152608 -132175739 - L1M2 LINE L1 -637 5675 5489 2292 99 56 18 chr4 70152611 70152953 -132175394 + THE1A LTR MaLR 1 355 0 21 0 0 0 chr4 70154386 70154407 -132173940 + AT_rich Low_complexity Low_complexity 1 21 0 1893 193 43 26 chr4 70154912 70155446 -132172901 - MLT2A2 LTR ERVL -10 544 1 2003 148 65 8 chr4 70156910 70157281 -132171066 + L1PA15 LINE L1 5767 6158 -7 501 340 58 0 chr4 70157559 70157763 -132170584 - MIR SINE MIR -33 229 14 3304 205 136 38 chr4 70157965 70158941 -132169406 + L1MA7 LINE L1 1 1072 -6137 4245 222 21 31 chr4 70158961 70160689 -132167658 + L1MA7 LINE L1 2773 4481 -2727 314 237 19 0 chr4 70160733 70160833 -132167514 + L1MA7 LINE L1 4848 4950 -2258 2672 178 26 16 chr4 70160849 70161489 -132166858 + L1MA7 LINE L1 6195 6843 -510 1051 136 0 0 chr4 70161493 70161640 -132166707 + AluSq SINE Alu 18 164 -149 1186 220 19 0 chr4 70161640 70161908 -132166439 + L1MA7 LINE L1 7055 7327 -26 243 282 206 24 chr4 70163498 70163668 -132164679 - L2 LINE L2 0 3313 3113 327 330 95 41 chr4 70163880 70164174 -132164173 + L2 LINE L2 2996 3305 -8 2141 75 41 10 chr4 70164250 70164543 -132163804 - AluY SINE Alu -9 302 1 181 419 65 10 chr4 70164543 70164834 -132163513 + L2 LINE L2 2478 2784 -530 284 287 102 36 chr4 70165119 70165286 -132163061 + L2 LINE L2 3118 3295 -18 551 336 101 21 chr4 70166313 70166649 -132161698 - L2 LINE L2 -2 3311 2949 4604 136 8 0 chr4 70166691 70167826 -132160521 - L1PA16 LINE L1 -3 6163 5027 2864 262 86 53 chr4 70167833 70167997 -132160350 + L1MC4a LINE L1 6235 6392 -1416 192 77 0 0 chr4 70167997 70168023 -132160324 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2864 262 86 53 chr4 70168023 70168232 -132160115 + L1MC4a LINE L1 6392 6593 -1215 1441 200 80 12 chr4 70168232 70168557 -132159790 + MER7A DNA MER2_type 1 345 -1 2864 262 86 53 chr4 70168557 70168601 -132159746 + L1MC4a LINE L1 6593 6634 -1174 7586 73 4 2 chr4 70168601 70169568 -132158779 - LTR5 LTR ERVK 0 969 1 2864 262 86 53 chr4 70169568 70170292 -132158055 + L1MC4a LINE L1 6634 7427 -381 3270 110 45 4 chr4 70170292 70170783 -132157564 + MER9 LTR ERVK 1 511 0 2864 262 86 53 chr4 70170783 70170931 -132157416 + L1MC4a LINE L1 7427 7569 -239 783 224 62 29 chr4 70170925 70171197 -132157150 + L1MC4 LINE L1 7761 8041 -1 * 180 77 0 0 chr4 70171301 70171327 -132157020 + (T)n Simple_repeat Simple_repeat 1 26 0 2374 85 0 0 chr4 70171718 70172024 -132156323 - AluY SINE Alu -5 306 1 21 71 0 0 chr4 70172032 70172074 -132156273 + AT_rich Low_complexity Low_complexity 1 42 0 26 82 0 0 chr4 70172283 70172344 -132156003 + AT_rich Low_complexity Low_complexity 1 61 0 2104 130 0 0 chr4 70172475 70172775 -132155572 - AluSx SINE Alu -12 300 1 389 287 85 53 chr4 70173933 70174121 -132154226 - MIR SINE MIR -64 198 5 887 294 93 62 chr4 70175242 70175756 -132152591 + MLT2F LTR ERVL 60 589 -74 1559 168 59 33 chr4 70176184 70176487 -132151860 + AluJb SINE Alu 1 311 -1 202 265 0 20 chr4 70176908 70176957 -132151390 + L2 LINE L2 3221 3268 -4 186 370 31 16 chr4 70176955 70177082 -132151265 + L3 LINE CR1 1445 1573 -4 * 24 32 0 0 chr4 70177678 70177709 -132150638 + AT_rich Low_complexity Low_complexity 1 31 0 186 103 0 0 chr4 70178074 70178103 -132150244 + (TC)n Simple_repeat Simple_repeat 2 30 0 192 40 0 0 chr4 70178403 70178428 -132149919 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 182 384 160 14 chr4 70178564 70178783 -132149564 - MIR SINE MIR 0 262 12 298 281 43 43 chr4 70179006 70179145 -132149202 + MIR SINE MIR 4 142 -120 1188 188 0 0 chr4 70179425 70179633 -132148714 - AluJb SINE Alu -18 294 87 2549 43 7 0 chr4 70181770 70182075 -132146272 - AluY SINE Alu -4 307 1 21 0 0 0 chr4 70184998 70185019 -132143328 + AT_rich Low_complexity Low_complexity 1 21 0 182 338 13 0 chr4 70186275 70186352 -132141995 - L2 LINE L2 -6 3307 3230 231 372 12 0 chr4 70186656 70186742 -132141605 - L2 LINE L2 -299 3014 2928 337 327 89 71 chr4 70186789 70186981 -132141366 - L2 LINE L2 -407 2907 2720 2376 98 8 11 chr4 70186981 70187337 -132141010 + L1PA8 LINE L1 5808 6162 -10 337 327 89 71 chr4 70187337 70187594 -132140753 - L2 LINE L2 -594 2720 2450 33 25 0 0 chr4 70187812 70187852 -132140495 + AT_rich Low_complexity Low_complexity 1 40 0 237 182 13 26 chr4 70187965 70188042 -132140305 + (TA)n Simple_repeat Simple_repeat 2 77 0 232 153 14 56 chr4 70188046 70188118 -132140229 - L1MC4 LINE L1 -1346 6696 6628 228 271 14 0 chr4 70188303 70188373 -132139974 + (TA)n Simple_repeat Simple_repeat 1 71 0 14751 69 8 71 chr4 70188575 70190673 -132137674 + L1PA6 LINE L1 3422 5423 -731 1962 98 69 0 chr4 70190673 70190949 -132137398 - AluSg SINE Alu -15 295 1 14751 69 8 71 chr4 70190949 70191634 -132136713 + L1PA6 LINE L1 5423 6149 -5 22 35 0 0 chr4 70191641 70191670 -132136677 + AT_rich Low_complexity Low_complexity 1 29 0 249 98 0 0 chr4 70192124 70192165 -132136182 + (GA)n Simple_repeat Simple_repeat 2 42 0 21 36 0 0 chr4 70192565 70192593 -132135754 + AT_rich Low_complexity Low_complexity 1 28 0 24509 154 7 18 chr4 70193116 70198575 -132129772 + L1PA8A LINE L1 1008 6415 -31 1149 153 131 77 chr4 70199289 70199563 -132128784 - AluSx SINE Alu -13 289 1 2039 145 0 0 chr4 70200501 70200811 -132127536 - AluSg SINE Alu 0 310 1 251 329 103 54 chr4 70201832 70202182 -132126165 - L2 LINE L2 -1 3312 2946 379 252 60 75 chr4 70202295 70202628 -132125719 + L1M4 LINE L1 4487 4814 -1332 252 291 17 40 chr4 70203159 70203334 -132125013 + L1MC/D LINE L1 4383 4553 -1593 2125 176 29 17 chr4 70203494 70203915 -132124432 - MSTB LTR MaLR 0 426 1 614 342 34 13 chr4 70204251 70204727 -132123620 + L1MC/D LINE L1 5264 5749 -2059 359 310 43 21 chr4 70204841 70205028 -132123319 + L1M4 LINE L1 4507 4697 -1449 239 269 59 28 chr4 70205072 70205362 -132122985 + L1M4 LINE L1 5094 5392 -754 2064 106 3 14 chr4 70205368 70205661 -132122686 + AluSc SINE Alu 1 290 -19 214 331 8 57 chr4 70205677 70205801 -132122546 + L2 LINE L2 2503 2620 -694 5783 146 19 42 chr4 70205805 70205991 -132122356 - L1MA3 LINE L1 -9 7715 7526 2609 13 7 3 chr4 70205991 70206294 -132122053 + AluYb8 SINE Alu 1 304 -14 5783 146 19 42 chr4 70206294 70207765 -132120582 - L1MA3 LINE L1 -198 7526 6096 4989 193 20 10 chr4 70207763 70209743 -132118604 - L1MA3 LINE L1 -2673 4892 2840 * 4847 162 16 0 chr4 70209739 70210504 -132117843 - L1MA3 LINE L1 -5345 2220 1444 * 11544 45 0 1 chr4 70210501 70211936 -132116411 - L1PA4 LINE L1 -1451 4695 3262 7560 31 0 0 chr4 70211936 70213398 -132114949 + L1PA4 LINE L1 4694 6155 0 2616 165 2 15 chr4 70213402 70213856 -132114491 - L1MA3 LINE L1 -6121 1444 997 2123 239 8 19 chr4 70214353 70214762 -132113585 + MLT2B1 LTR ERVL 1 406 -114 876 255 105 46 chr4 70214762 70215135 -132113212 + MSTD LTR MaLR 2 396 0 2123 239 8 19 chr4 70215135 70215210 -132113137 + MLT2B1 LTR ERVL 406 480 -40 198 143 0 0 chr4 70215210 70215245 -132113102 + (TG)n Simple_repeat Simple_repeat 1 35 0 281 164 36 0 chr4 70215245 70215300 -132113047 + MLT2B1 LTR ERVL 464 520 0 2076 127 0 19 chr4 70215421 70215737 -132112610 - AluSx SINE Alu -2 310 1 1401 276 19 32 chr4 70216087 70216518 -132111829 - MLT1D LTR MaLR 0 505 81 180 245 66 104 chr4 70218231 70218337 -132110010 + L3 LINE CR1 911 1012 -565 828 158 0 8 chr4 70219576 70219709 -132108638 - FLAM_C SINE Alu 0 133 2 241 200 20 0 chr4 70220209 70220259 -132108088 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 2615 289 65 34 chr4 70220690 70222173 -132106174 + L1ME1 LINE L1 3750 5278 -868 883 239 88 21 chr4 70222208 70222492 -132105855 + L1ME1 LINE L1 5282 5584 -578 * 4603 102 11 1 chr4 70222486 70223152 -132105195 - L1PA7 LINE L1 -1483 4663 3992 6371 88 14 2 chr4 70223153 70224619 -132103728 + L1PA7 LINE L1 4678 6154 0 1820 264 18 38 chr4 70224622 70225228 -132103119 + L1ME1 LINE L1 5569 6162 -4 216 0 0 0 chr4 70225233 70225257 -132103090 + (A)n Simple_repeat Simple_repeat 1 24 0 216 0 0 0 chr4 70226444 70226468 -132101879 + (A)n Simple_repeat Simple_repeat 1 24 0 2019 125 7 0 chr4 70229104 70229391 -132098956 + AluY SINE Alu 1 289 -22 639 135 0 0 chr4 70230557 70230668 -132097679 + L1MA7 LINE L1 6181 6291 0 870 284 75 34 chr4 70230947 70231415 -132096932 + HAL1 LINE L1 1173 1659 -848 868 307 123 13 chr4 70231574 70232042 -132096305 - MLT1G LTR MaLR 0 590 77 361 275 69 76 chr4 70232263 70232525 -132095822 - L2 LINE L2 -12 3301 3042 1635 297 82 33 chr4 70233089 70233967 -132094380 - L2 LINE L2 -289 2983 1990 11751 216 37 18 chr4 70233971 70239250 -132089097 + L1M1 LINE L1 12 6134 -1431 24 0 0 0 chr4 70239611 70239635 -132088712 + AT_rich Low_complexity Low_complexity 1 24 0 215 316 176 37 chr4 70240874 70241010 -132087337 + MER5A DNA MER1_type 12 166 -23 * 399 253 0 21 chr4 70240933 70241028 -132087319 - MER5A DNA MER1_type -80 109 17 682 121 0 0 chr4 70243065 70243164 -132085183 - THE1-int LTR MaLR -789 791 693 1948 152 76 15 chr4 70244089 70244432 -132083915 - THE1B LTR MaLR 0 364 1 10785 111 13 4 chr4 70244432 70245998 -132082349 - THE1B-int LTR MaLR 0 1580 1 1900 163 73 14 chr4 70245998 70246342 -132082005 - THE1B LTR MaLR 0 364 1 620 341 33 4 chr4 70246467 70246740 -132081607 - HsTC2c DNA Tc2 0 729 449 390 252 235 8 chr4 70246743 70246862 -132081485 - MER5A DNA MER1_type 0 189 44 563 295 96 39 chr4 70246890 70247152 -132081195 - HsTC2c DNA Tc2 -314 415 136 483 247 45 39 chr4 70247152 70247296 -132081051 + MER92B LTR ERV1 1 148 -488 6957 53 11 12 chr4 70247296 70247314 -132081033 + L1PA8 LINE L1 5158 5175 -997 195 69 0 0 chr4 70247314 70247343 -132081004 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6957 53 11 12 chr4 70247343 70248325 -132080022 + L1PA8 LINE L1 5175 6159 -13 291 236 0 14 chr4 70248411 70248483 -132079864 + MER92C LTR ERV1 484 554 0 275 378 0 9 chr4 70248506 70248617 -132079730 + MIR SINE MIR 3 112 -150 2214 129 20 6 chr4 70248637 70248994 -132079353 + MER4D LTR ERV1 1 362 -510 1559 118 9 0 chr4 70249499 70249720 -132078627 - AluSg/x SINE Alu -14 298 76 2288 75 3 3 chr4 70249720 70250014 -132078333 - AluSg SINE Alu -15 295 1 1946 104 28 67 chr4 70250447 70250803 -132077544 + MER4D LTR ERV1 562 903 0 399 329 122 14 chr4 70250932 70251285 -132077062 + L2 LINE L2 2815 3205 -108 1686 202 140 25 chr4 70251291 70251777 -132076570 - MER45B DNA AcHobo -2 1038 497 1172 257 95 14 chr4 70251792 70252088 -132076259 - MER45B DNA AcHobo -719 321 2 339 25 0 0 chr4 70253090 70253130 -132075217 + (TA)n Simple_repeat Simple_repeat 2 41 0 728 205 106 7 chr4 70253213 70253546 -132074801 + LTR37A LTR ERV1 3 407 -19 608 322 55 63 chr4 70253561 70253924 -132074423 - MLT1J LTR MaLR -147 364 5 1236 167 105 145 chr4 70253940 70254472 -132073875 + MER67D LTR ERV1 1 511 -3 312 332 79 6 chr4 70255013 70255177 -132073170 + MIR SINE MIR 42 216 -46 227 306 0 0 chr4 70255306 70255368 -132072979 + MIR SINE MIR 131 192 -70 1672 176 106 22 chr4 70256239 70256597 -132071750 - MLT1B LTR MaLR -2 388 1 41 36 0 0 chr4 70256731 70256786 -132071561 + AT_rich Low_complexity Low_complexity 1 55 0 1734 184 46 0 chr4 70257022 70257391 -132070956 + L1MB3 LINE L1 5790 6175 -8 1255 220 50 31 chr4 70258717 70259179 -132069168 + MLT2B1 LTR ERVL 1 519 -1 268 273 147 7 chr4 70259183 70259333 -132069014 - MLT1L LTR MaLR -23 592 422 21 0 0 0 chr4 70261512 70261533 -132066814 + AT_rich Low_complexity Low_complexity 1 21 0 1342 237 40 13 chr4 70261771 70262151 -132066196 + MLT1B LTR MaLR 1 390 0 32 26 0 0 chr4 70262322 70262361 -132065986 + AT_rich Low_complexity Low_complexity 1 39 0 203 313 73 21 chr4 70262440 70262536 -132065811 - MIR SINE MIR -87 121 21 901 265 48 58 chr4 70263089 70263467 -132064880 + MLT1A2 LTR MaLR 1 374 0 531 319 44 12 chr4 70263702 70263953 -132064394 + MIR SINE MIR 2 260 -2 258 172 20 121 chr4 70264171 70264270 -132064077 - MER103 DNA DNA -74 92 4 1231 252 61 3 chr4 70264680 70264990 -132063357 - MER58B DNA MER1_type -4 337 10 1675 124 32 3 chr4 70265044 70265326 -132063021 + L1MA3 LINE L1 6013 6302 -3 10934 178 39 7 chr4 70266377 70269178 -132059169 + L1MA6 LINE L1 2886 5811 -489 264 30 0 0 chr4 70269178 70269211 -132059136 + (CA)n Simple_repeat Simple_repeat 2 34 0 10934 178 39 7 chr4 70269211 70269705 -132058642 + L1MA6 LINE L1 5811 6288 -12 24547 77 5 5 chr4 70269720 70275860 -132052487 - L1PA6 LINE L1 -1 6153 11 22 0 0 0 chr4 70276841 70276863 -132051484 + AT_rich Low_complexity Low_complexity 1 22 0 1451 184 18 29 chr4 70276871 70277148 -132051199 - AluJb SINE Alu -38 274 1 2119 277 61 37 chr4 70277423 70277845 -132050502 + L2 LINE L2 1928 2377 -937 2102 130 3 3 chr4 70277845 70278146 -132050201 + AluSp SINE Alu 1 301 -12 2119 277 61 37 chr4 70278146 70278477 -132049870 + L2 LINE L2 2377 2699 -615 2238 105 0 0 chr4 70279915 70280210 -132048137 - AluSc SINE Alu -14 295 1 24 67 0 0 chr4 70281652 70281697 -132046650 + AT_rich Low_complexity Low_complexity 1 45 0 22 70 0 0 chr4 70282451 70282494 -132045853 + AT_rich Low_complexity Low_complexity 1 43 0 375 154 41 8 chr4 70282612 70282735 -132045612 + (TA)n Simple_repeat Simple_repeat 1 127 0 361 177 42 21 chr4 70282735 70282831 -132045516 - L1P4 LINE L1 -692 5474 5377 * 3596 217 52 16 chr4 70282803 70283746 -132044601 - L1 LINE L1 -855 5291 4315 1827 198 13 10 chr4 70283745 70284140 -132044207 + L1MB1 LINE L1 5504 5899 -269 * 5832 143 12 12 chr4 70284139 70284449 -132043898 - L1PA15-16 LINE L1 -4114 2735 2427 2726 13 0 3 chr4 70284449 70284758 -132043589 + AluYa5 SINE Alu 1 308 -3 5832 143 12 12 chr4 70284758 70285787 -132042560 - L1PA15-16 LINE L1 -4422 2427 1254 23 0 0 0 chr4 70286593 70286616 -132041731 + AT_rich Low_complexity Low_complexity 1 23 0 325 267 40 89 chr4 70286671 70286873 -132041474 + HAL1 LINE L1 1451 1642 -865 565 299 72 17 chr4 70287185 70287599 -132040748 + L1M4 LINE L1 2193 2629 -3517 403 304 105 25 chr4 70287599 70287874 -132040473 - MLT1G LTR MaLR -20 510 248 685 175 144 152 chr4 70287961 70288350 -132039997 + MER57A LTR ERV1 16 401 -2 302 196 0 0 chr4 70288541 70288597 -132039750 + L1PA15-16 LINE L1 181 236 -6613 * 3248 220 15 1 chr4 70288591 70289312 -132039035 + L1PA15-16 LINE L1 475 1318 -5531 234 342 8 0 chr4 70289367 70289484 -132038863 + L1M4 LINE L1 3273 3390 -2756 236 118 0 0 chr4 70289491 70289525 -132038822 + L1PA15-16 LINE L1 525 558 -6291 279 299 45 0 chr4 70289805 70289872 -132038475 + L2 LINE L2 3208 3277 -36 4694 29 2 0 chr4 70290475 70291029 -132037318 - L1PA4 LINE L1 -3 6152 5598 2901 37 2 3 chr4 70291029 70291535 -132036812 + L1PA4 LINE L1 5109 5614 -540 23 54 0 0 chr4 70291963 70292000 -132036347 + AT_rich Low_complexity Low_complexity 1 37 0 263 313 45 0 chr4 70292157 70292224 -132036123 - L2 LINE L2 -36 3277 3208 483 309 52 29 chr4 70293601 70293811 -132034536 - MIR SINE MIR -46 216 2 22 0 0 0 chr4 70294376 70294398 -132033949 + AT_rich Low_complexity Low_complexity 1 22 0 180 346 0 0 chr4 70294649 70294701 -132033646 - L2 LINE L2 -15 3257 3206 221 267 258 17 chr4 70294814 70294915 -132033432 - L3 LINE CR1 -4 1573 1437 585 42 53 0 chr4 70294915 70295010 -132033337 + (TCTA)n Simple_repeat Simple_repeat 1 100 0 221 267 258 17 chr4 70295010 70295028 -132033319 - L3 LINE CR1 -140 1437 1425 2289 130 71 20 chr4 70295931 70296338 -132032009 + MSTA LTR MaLR 1 428 0 25 0 0 0 chr4 70298055 70298080 -132030267 + AT_rich Low_complexity Low_complexity 1 25 0 207 200 40 13 chr4 70299550 70299625 -132028722 + A-rich Low_complexity Low_complexity 5 81 0 503 104 39 0 chr4 70299710 70299787 -132028560 - MADE1 DNA Mariner 0 80 1 23 0 0 0 chr4 70300417 70300440 -132027907 + AT_rich Low_complexity Low_complexity 1 23 0 544 316 38 60 chr4 70300720 70301273 -132027074 + L1MC3 LINE L1 5465 6005 -1780 * 3585 157 47 53 chr4 70300788 70301577 -132026770 + L1MA9 LINE L1 5528 6311 -1 292 250 233 0 chr4 70302023 70302139 -132026208 - L2 LINE L2 0 3313 3171 1433 302 123 30 chr4 70302149 70302821 -132025526 - L2 LINE L2 -2521 793 59 183 42 0 0 chr4 70302993 70303017 -132025330 + (T)n Simple_repeat Simple_repeat 1 24 0 346 94 250 0 chr4 70303138 70303202 -132025145 - MADE1 DNA Mariner 0 80 1 686 201 0 8 chr4 70303304 70303438 -132024909 - MLT2B3 LTR ERVL -421 133 1 794 249 36 16 chr4 70303443 70303636 -132024711 + MIR SINE MIR 36 232 -30 2467 193 37 7 chr4 70304938 70305400 -132022947 + MER70B LTR ERVL 1 476 -102 22 35 0 0 chr4 70306152 70306181 -132022166 + AT_rich Low_complexity Low_complexity 1 29 0 246 145 89 8 chr4 70306239 70306363 -132021984 + (TA)n Simple_repeat Simple_repeat 1 134 0 58 54 0 0 chr4 70306471 70306564 -132021783 + AT_rich Low_complexity Low_complexity 1 93 0 187 125 69 0 chr4 70306571 70306643 -132021704 + (TA)n Simple_repeat Simple_repeat 2 78 0 22 0 0 0 chr4 70306723 70306745 -132021602 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 70306923 70306953 -132021394 + AT_rich Low_complexity Low_complexity 1 30 0 261 303 20 20 chr4 70307000 70307099 -132021248 + MLT1B LTR MaLR 1 99 -431 860 214 58 40 chr4 70307253 70307477 -132020870 + MER97c DNA MER1_type? 340 567 -523 407 69 0 0 chr4 70307496 70307554 -132020793 - L1PA2 LINE L1 -3 6152 6095 6061 31 0 0 chr4 70307554 70308796 -132019551 + L1PA2 LINE L1 4734 5975 -180 642 242 40 37 chr4 70308796 70309118 -132019229 + MER97a DNA MER1_type? 555 877 -17 258 349 60 20 chr4 70309827 70309976 -132018371 + MIR SINE MIR 46 200 -62 304 147 0 29 chr4 70310027 70310095 -132018252 + (TA)n Simple_repeat Simple_repeat 1 66 0 32 43 0 0 chr4 70310798 70310844 -132017503 + AT_rich Low_complexity Low_complexity 1 46 0 1322 222 27 33 chr4 70312885 70313219 -132015128 + MLT1B LTR MaLR 59 390 0 2217 114 3 0 chr4 70313271 70313577 -132014770 + AluSq SINE Alu 1 307 -6 286 182 18 0 chr4 70313695 70313750 -132014597 - MLT1B LTR MaLR -334 56 1 24 0 0 0 chr4 70314124 70314148 -132014199 + AT_rich Low_complexity Low_complexity 1 24 0 1077 150 0 0 chr4 70315597 70315770 -132012577 + L1MA7 LINE L1 5827 5999 -292 694 275 24 3 chr4 70315771 70316062 -132012285 + MER114 LTR ERV 12 308 -340 475 244 102 43 chr4 70316155 70316265 -132012082 + MER114 LTR ERV 325 427 -221 667 191 7 29 chr4 70316265 70316401 -132011946 + FLAM_C SINE Alu 1 133 0 475 244 102 43 chr4 70316401 70316593 -132011754 + MER114 LTR ERV 427 645 -3 313 293 77 19 chr4 70317649 70317913 -132010434 + L1MCa LINE L1 4 249 -5796 1773 133 55 81 chr4 70317932 70318317 -132010030 - THE1C LTR MaLR 0 375 1 2725 228 54 6 chr4 70318336 70319002 -132009345 + L1MC3 LINE L1 6640 7337 -448 1785 224 62 114 chr4 70319299 70319955 -132008392 - MLT1E2 LTR MaLR -2 624 1 23 68 0 0 chr4 70320897 70320941 -132007406 + AT_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr4 70321041 70321076 -132007271 + AT_rich Low_complexity Low_complexity 1 35 0 2152 123 10 0 chr4 70321324 70321633 -132006714 + AluSx SINE Alu 1 312 0 342 298 21 37 chr4 70323839 70324030 -132004317 + Charlie8 DNA MER1_type 27 214 -2203 491 283 171 5 chr4 70325309 70325496 -132002851 - MIR SINE MIR -26 236 19 575 324 58 14 chr4 70326292 70326570 -132001777 + L2 LINE L2 2863 3152 -161 1374 214 84 53 chr4 70327588 70328078 -132000269 - MLT1D LTR MaLR 0 505 1 288 296 0 11 chr4 70328840 70328928 -131999419 - MLT1I LTR MaLR -242 167 81 917 258 85 58 chr4 70329098 70329272 -131999075 - HAL1b LINE L1 -215 1133 965 2101 92 4 4 chr4 70329272 70329589 -131998758 + AluSx SINE Alu 1 317 0 917 258 85 58 chr4 70329589 70329999 -131998348 - HAL1b LINE L1 -383 965 532 337 351 67 32 chr4 70330088 70330370 -131997977 + MLT1I LTR MaLR 69 360 -49 4458 144 10 34 chr4 70331664 70332464 -131995883 + LTR25 LTR ERV1 1 781 -13 291 28 0 0 chr4 70332670 70332706 -131995641 + (CA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr4 70333112 70333134 -131995213 + AT_rich Low_complexity Low_complexity 1 22 0 343 316 75 31 chr4 70333143 70333463 -131994884 + L1M4 LINE L1 4175 4508 -1638 26 0 0 0 chr4 70333951 70333977 -131994370 + AT_rich Low_complexity Low_complexity 1 26 0 975 160 19 14 chr4 70334709 70334921 -131993426 + L1MA4 LINE L1 6085 6297 -3 476 278 59 18 chr4 70336703 70336872 -131991475 - MIR SINE MIR -16 246 71 381 282 6 0 chr4 70337131 70337294 -131991053 + (TA)n Simple_repeat Simple_repeat 2 165 0 35 63 0 0 chr4 70338025 70338088 -131990259 + AT_rich Low_complexity Low_complexity 1 63 0 198 0 0 0 chr4 70339483 70339505 -131988842 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1856 114 0 4 chr4 70339507 70339762 -131988585 - AluSq SINE Alu -36 277 24 1701 157 3 13 chr4 70339889 70340189 -131988158 - AluJb SINE Alu -13 299 3 24 32 0 0 chr4 70341628 70341659 -131986688 + AT_rich Low_complexity Low_complexity 1 31 0 1452 193 13 23 chr4 70341668 70341969 -131986378 + AluJo SINE Alu 1 298 -14 799 303 32 11 chr4 70342705 70342982 -131985365 + LTR16A LTR ERVL 168 450 0 182 118 29 0 chr4 70343716 70343750 -131984597 + (TA)n Simple_repeat Simple_repeat 1 35 0 2088 125 3 0 chr4 70344203 70344507 -131983840 - AluSx SINE Alu -7 305 1 25 31 0 0 chr4 70344734 70344766 -131983581 + AT_rich Low_complexity Low_complexity 1 32 0 254 400 28 6 chr4 70346720 70346900 -131981447 - MIR3 SINE MIR -24 184 1 23 0 0 0 chr4 70347007 70347030 -131981317 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr4 70348172 70348199 -131980148 + AT_rich Low_complexity Low_complexity 1 27 0 41 0 0 0 chr4 70348414 70348455 -131979892 + AT_rich Low_complexity Low_complexity 1 41 0 2932 165 45 27 chr4 70348543 70349126 -131979221 - LTR34 LTR ERV1 -103 596 4 226 195 55 47 chr4 70349197 70349325 -131979022 + (TATAA)n Simple_repeat Simple_repeat 5 133 0 298 43 106 0 chr4 70349371 70349418 -131978929 - MLT2A1 LTR ERVL 0 453 402 2740 109 5 22 chr4 70349448 70349859 -131978488 - MLT2A1 LTR ERVL -40 404 1 1753 141 39 3 chr4 70349932 70350216 -131978131 + MER49 LTR ERV1 1 294 -629 439 236 0 12 chr4 70350202 70350319 -131978028 + MER4E LTR ERV1 62 284 -588 * 1257 240 25 30 chr4 70350314 70350677 -131977670 + MER4D LTR ERV1 543 903 0 22 0 0 0 chr4 70351689 70351711 -131976636 + AT_rich Low_complexity Low_complexity 1 22 0 206 204 0 0 chr4 70352672 70352716 -131975631 + L3b LINE CR1 1539 1582 -1 21 0 0 0 chr4 70352796 70352817 -131975530 + AT_rich Low_complexity Low_complexity 1 21 0 303 260 26 0 chr4 70354293 70354370 -131973977 + GA-rich Low_complexity Low_complexity 2 80 0 274 328 40 16 chr4 70354551 70354676 -131973671 - L2 LINE L2 0 3313 3186 22 35 0 0 chr4 70354737 70354766 -131973581 + AT_rich Low_complexity Low_complexity 1 29 0 222 118 0 0 chr4 70354944 70354978 -131973369 + (TG)n Simple_repeat Simple_repeat 2 35 0 246 114 0 0 chr4 70355383 70355427 -131972920 + LTR66 LTR ERVL 398 441 -169 260 266 51 0 chr4 70355429 70355508 -131972839 - L1MC4 LINE L1 -1339 6703 6621 1605 197 14 0 chr4 70356334 70356628 -131971719 - AluJo SINE Alu -14 298 1 449 247 31 43 chr4 70357266 70357428 -131970919 - MIR SINE MIR 0 262 103 2218 84 0 3 chr4 70357577 70357873 -131970474 + AluY SINE Alu 2 296 -15 282 260 70 30 chr4 70358043 70358143 -131970204 + MIR SINE MIR 49 152 -110 817 269 52 36 chr4 70360048 70360429 -131967918 + L1MDb LINE L1 34 396 -6144 600 195 8 0 chr4 70360432 70360555 -131967792 + L1MD2 LINE L1 6232 6355 -4 2111 165 57 30 chr4 70360722 70361242 -131967105 - MLT2A2 LTR ERVL 0 554 1 24 0 0 0 chr4 70361715 70361739 -131966608 + AT_rich Low_complexity Low_complexity 1 24 0 1263 38 38 0 chr4 70361739 70361896 -131966451 - L1PA5 LINE L1 -6 6148 5986 1913 179 117 2 chr4 70362404 70362824 -131965523 - L1MA5 LINE L1 -2 6298 5831 21 36 0 0 chr4 70362828 70362856 -131965491 + AT_rich Low_complexity Low_complexity 1 28 0 393 353 73 32 chr4 70363365 70363583 -131964764 + MIR SINE MIR 32 258 -4 1442 204 127 3 chr4 70363883 70364191 -131964156 + MLT1A1 LTR MaLR 12 357 -8 375 336 86 55 chr4 70364720 70365232 -131963115 + L2 LINE L2 1842 2369 -945 1601 173 96 3 chr4 70367969 70368293 -131960054 - MER46B DNA MER2_type -7 229 1 23 0 0 0 chr4 70368914 70368937 -131959410 + AT_rich Low_complexity Low_complexity 1 23 0 6417 265 157 15 chr4 70368971 70371281 -131957066 + L1MA5 LINE L1 11 2647 -4202 7392 223 34 56 chr4 70371302 70373378 -131954969 + L1MA5 LINE L1 3767 5795 -1053 1088 79 7 0 chr4 70373414 70373554 -131954793 - AluY SINE Alu -170 141 1 3349 160 31 3 chr4 70373556 70374331 -131954016 + L1MA5 LINE L1 5782 6579 -423 484 113 0 0 chr4 70374345 70374416 -131953931 + MADE1 DNA Mariner 10 80 0 1954 152 5 98 chr4 70374416 70374856 -131953491 + L1MA5 LINE L1 6579 6977 -25 30 77 0 0 chr4 70375299 70375364 -131952983 + AT_rich Low_complexity Low_complexity 1 65 0 282 297 42 25 chr4 70375588 70375706 -131952641 - MER5B DNA MER1_type -52 126 7 647 229 14 7 chr4 70375739 70375883 -131952464 - MER5B DNA MER1_type -6 172 28 378 0 0 0 chr4 70376384 70376426 -131951921 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 2018 257 47 62 chr4 70377673 70378749 -131949598 + MER63D DNA MER1_type 2 1061 0 3880 169 82 23 chr4 70380824 70382450 -131945897 - L1PBa LINE L1 -4878 1985 122 327 210 37 12 chr4 70382461 70382542 -131945805 + MLT1J LTR MaLR 429 511 0 309 320 92 62 chr4 70382575 70382944 -131945403 - MLT1J LTR MaLR -129 382 3 26 50 0 0 chr4 70383051 70383091 -131945256 + AT_rich Low_complexity Low_complexity 1 40 0 296 299 52 39 chr4 70383285 70383439 -131944908 + MIR SINE MIR 94 249 -13 21 0 0 0 chr4 70383712 70383733 -131944614 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4 70384011 70384042 -131944305 + AT_rich Low_complexity Low_complexity 1 31 0 8457 200 16 19 chr4 70385337 70388301 -131940046 - L1PA16 LINE L1 -9 6157 3205 1975 82 4 0 chr4 70388575 70388831 -131939516 + AluSp SINE Alu 39 295 -18 2170 94 3 0 chr4 70388910 70389197 -131939150 + AluSq SINE Alu 2 289 -24 990 247 29 8 chr4 70389255 70389494 -131938853 - MLT1D LTR MaLR 0 505 262 188 328 0 0 chr4 70389864 70389922 -131938425 + L2 LINE L2 3215 3272 0 1531 227 56 11 chr4 70390109 70390572 -131937775 - Charlie1 DNA MER1_type -26 2735 2252 1031 229 29 36 chr4 70390579 70390718 -131937629 - Charlie1 DNA MER1_type -990 1771 1633 2240 102 0 0 chr4 70390718 70391011 -131937336 + AluSx SINE Alu 1 293 -19 1031 229 29 36 chr4 70391011 70391146 -131937201 - Charlie1 DNA MER1_type -1128 1633 1499 12344 221 29 16 chr4 70392239 70395743 -131932604 - L1PA15-16 LINE L1 -2324 4525 1255 2156 122 3 0 chr4 70395743 70396039 -131932308 + AluSx SINE Alu 1 297 -15 12344 221 29 16 chr4 70396039 70397312 -131931035 - L1PA15-16 LINE L1 -5594 1255 1 1107 239 47 115 chr4 70397319 70397746 -131930601 + MLT2B1 LTR ERVL 17 414 0 12768 226 50 16 chr4 70397747 70401247 -131927100 + ERVL-B1 LTR ERVL 2 3566 -1919 9568 174 80 50 chr4 70401259 70402899 -131925448 + ERVL-B1 LTR ERVL 3693 5475 -289 259 243 0 0 chr4 70402899 70402961 -131925386 - L1MC4 LINE L1 -1333 6709 6645 1759 142 70 25 chr4 70402961 70403320 -131925027 + THE1C LTR MaLR 1 375 0 259 243 0 0 chr4 70403320 70403331 -131925016 - L1MC4 LINE L1 -1396 6646 6636 9568 174 80 50 chr4 70403331 70403622 -131924725 + ERVL-B1 LTR ERVL 5475 5756 -8 1105 193 58 93 chr4 70403623 70404001 -131924346 + MLT2B1 LTR ERVL 1 365 -49 254 326 0 0 chr4 70404018 70404104 -131924243 + (TA)n Simple_repeat Simple_repeat 1 86 0 233 172 0 109 chr4 70404104 70404124 -131924223 + MLT2B1 LTR ERVL 464 485 -35 228 67 0 0 chr4 70404124 70404154 -131924193 + (CA)n Simple_repeat Simple_repeat 1 30 0 233 172 0 109 chr4 70404154 70404197 -131924150 + MLT2B1 LTR ERVL 485 520 0 24 0 0 0 chr4 70404338 70404362 -131923985 + AT_rich Low_complexity Low_complexity 1 24 0 233 206 0 29 chr4 70404387 70404455 -131923892 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 27 62 0 0 chr4 70404667 70404715 -131923632 + AT_rich Low_complexity Low_complexity 1 48 0 263 347 101 30 chr4 70406502 70406701 -131921646 + MIR SINE MIR 7 219 -43 394 309 138 32 chr4 70407682 70407899 -131920448 + MIR SINE MIR 18 257 -5 201 176 0 0 chr4 70407903 70407937 -131920410 + (TTA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr4 70408555 70408579 -131919768 + AT_rich Low_complexity Low_complexity 1 24 0 243 88 0 0 chr4 70409520 70409554 -131918793 + (TA)n Simple_repeat Simple_repeat 2 35 0 21 36 0 0 chr4 70409603 70409631 -131918716 + AT_rich Low_complexity Low_complexity 1 28 0 2050 170 78 15 chr4 70409744 70410144 -131918203 - MSTB LTR MaLR 0 426 2 21 0 0 0 chr4 70411019 70411040 -131917307 + AT_rich Low_complexity Low_complexity 1 21 0 453 308 105 68 chr4 70412079 70412449 -131915898 + L2 LINE L2 2925 3308 -5 21 0 0 0 chr4 70412599 70412620 -131915727 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr4 70416601 70416626 -131911721 + (TAA)n Simple_repeat Simple_repeat 1 25 0 599 246 34 50 chr4 70416675 70416854 -131911493 - MIR SINE MIR -72 190 15 228 318 183 8 chr4 70418588 70418714 -131909633 - MIR SINE MIR -108 154 7 192 162 27 0 chr4 70419065 70419102 -131909245 - L2 LINE L2 -4 3309 3272 21 0 0 0 chr4 70419689 70419710 -131908637 + AT_rich Low_complexity Low_complexity 1 21 0 611 266 58 0 chr4 70420424 70420578 -131907769 - MER63 DNA MER1_type -273 789 1 183 333 69 23 chr4 70420960 70421047 -131907300 + L2 LINE L2 3204 3294 -19 219 264 0 14 chr4 70422547 70422619 -131905728 + (TA)n Simple_repeat Simple_repeat 1 71 0 331 324 66 44 chr4 70422841 70423023 -131905324 - MIR SINE MIR -70 192 7 294 143 119 103 chr4 70423232 70423358 -131904989 + MER103 DNA DNA 26 153 -13 379 287 88 44 chr4 70423635 70423816 -131904531 + L2 LINE L2 3125 3313 0 258 287 116 50 chr4 70424772 70424953 -131903394 - L2 LINE L2 0 3313 3121 309 207 0 49 chr4 70425704 70425786 -131902561 + MER103 DNA DNA 32 109 -57 496 259 137 33 chr4 70426022 70426234 -131902113 + MIR SINE MIR 2 235 -27 289 329 0 0 chr4 70426344 70426429 -131901918 + MIR SINE MIR 52 136 -126 3028 189 36 64 chr4 70426748 70427526 -131900821 - L1MB7 LINE L1 0 6184 5429 685 231 55 11 chr4 70427857 70428039 -131900308 + MLT1F LTR MaLR 353 542 0 635 345 58 44 chr4 70428469 70429200 -131899147 - L2 LINE L2 -2 3311 2581 1209 273 98 58 chr4 70429452 70430779 -131897568 - L1MEc LINE L1 -4470 1926 547 354 378 84 25 chr4 70430890 70431176 -131897171 - L1MEc LINE L1 -5994 402 100 419 278 130 18 chr4 70431223 70431392 -131896955 - L2 LINE L2 -751 2563 2376 2292 150 8 0 chr4 70431438 70431799 -131896548 + THE1B LTR MaLR 1 364 0 9958 122 10 60 chr4 70431799 70433461 -131894886 + THE1B-int LTR MaLR 1 1579 -1 632 156 73 0 chr4 70433462 70433571 -131894776 + THE1B LTR MaLR 1 117 -247 274 125 0 0 chr4 70433559 70433599 -131894748 + THE1B LTR MaLR 325 364 0 * 352 335 25 35 chr4 70433604 70433807 -131894540 - L2 LINE L2 -964 2350 2150 213 65 0 0 chr4 70434131 70434162 -131894185 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 368 273 20 13 chr4 70434269 70434419 -131893928 - MER104 DNA Tc2 -16 164 14 387 0 0 0 chr4 70434465 70434508 -131893839 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 25 83 0 0 chr4 70435097 70435157 -131893190 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr4 70436287 70436310 -131892037 + AT_rich Low_complexity Low_complexity 1 23 0 585 247 18 24 chr4 70436706 70436876 -131891471 + MLT1J LTR MaLR 25 193 -318 245 192 8 144 chr4 70437487 70437612 -131890735 + MIR SINE MIR 90 197 -65 22 35 0 0 chr4 70438065 70438094 -131890253 + AT_rich Low_complexity Low_complexity 1 29 0 218 320 72 10 chr4 70438692 70438789 -131889558 - MIR SINE MIR -124 138 36 305 323 161 32 chr4 70438933 70439249 -131889098 + MLT1J LTR MaLR 104 460 -51 1524 201 3 20 chr4 70439773 70440094 -131888253 - AluJo SINE Alu 0 312 6 317 322 34 81 chr4 70441092 70441241 -131887106 - L2 LINE L2 -43 3229 3088 22 0 0 0 chr4 70441829 70441851 -131886496 + AT_rich Low_complexity Low_complexity 1 22 0 287 280 75 47 chr4 70441851 70442065 -131886282 + L1MC4a LINE L1 6047 6266 -1542 2356 80 0 22 chr4 70442318 70442632 -131885715 + AluY SINE Alu 3 309 -2 1598 192 0 4 chr4 70444534 70444815 -131883532 + AluJb SINE Alu 9 288 -24 27 29 0 0 chr4 70445032 70445066 -131883281 + AT_rich Low_complexity Low_complexity 1 34 0 22 58 0 43 chr4 70445361 70445430 -131882917 + AT_rich Low_complexity Low_complexity 1 66 0 306 106 0 0 chr4 70445594 70445641 -131882706 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 290 266 48 40 chr4 70446055 70446179 -131882168 + MER5B DNA MER1_type 1 125 -53 6287 226 114 10 chr4 70446628 70448165 -131880182 + L1M4 LINE L1 16 1711 -5854 4114 136 6 3 chr4 70448165 70448819 -131879528 + L1PA13 LINE L1 5506 6161 -2 43221 45 1 6 chr4 70448825 70454956 -131873391 + L1PA4 LINE L1 49 6147 -8 6569 163 22 14 chr4 70454985 70457225 -131871122 + L1MA1 LINE L1 2752 6296 -6 24 0 0 0 chr4 70458112 70458136 -131870211 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 70458242 70458263 -131870084 + AT_rich Low_complexity Low_complexity 1 21 0 198 358 156 37 chr4 70458692 70458715 -131869632 + MIR SINE MIR 14 33 -229 444 288 8 0 chr4 70458715 70458847 -131869500 + MER94 DNA DNA 1 133 -1 198 358 156 37 chr4 70458847 70459041 -131869306 + MIR SINE MIR 33 257 -5 274 295 117 85 chr4 70459627 70459743 -131868604 + MLT1I LTR MaLR 1 112 -297 2546 136 116 57 chr4 70459743 70460370 -131867977 + MER4A LTR ERV1 1 664 0 274 295 117 85 chr4 70460370 70460395 -131867952 + MLT1I LTR MaLR 112 135 -274 2204 122 9 94 chr4 70460395 70460830 -131867517 + MER48 LTR ERV1 1 398 0 274 295 117 85 chr4 70460830 70461063 -131867284 + MLT1I LTR MaLR 135 388 -21 24 77 0 0 chr4 70463049 70463101 -131865246 + AT_rich Low_complexity Low_complexity 1 52 0 422 366 92 16 chr4 70463202 70463508 -131864839 - L2 LINE L2 -23 3290 2962 853 231 60 60 chr4 70463734 70464033 -131864314 - MLT1A1 LTR MaLR 0 365 67 1071 226 55 52 chr4 70464616 70464979 -131863368 - MLT1A1 LTR MaLR 0 365 2 4105 163 139 94 chr4 70465001 70466493 -131861854 - pTR5 LTR ERV1 0 2438 880 2205 256 86 45 chr4 70466747 70467745 -131860602 + L1M4 LINE L1 1779 2817 -4749 330 314 108 35 chr4 70467997 70468574 -131859773 + L1M4 LINE L1 4743 5361 -2204 747 250 6 28 chr4 70468656 70468836 -131859511 + AluJo SINE Alu 5 180 -132 5211 159 24 9 chr4 70469102 70470503 -131857844 - L1MA1 LINE L1 -187 6115 4696 1986 118 0 7 chr4 70470867 70471146 -131857201 - AluSx SINE Alu -35 277 1 455 205 58 20 chr4 70471146 70471296 -131857051 - L1M LINE L1 -768 5378 5242 * 3368 159 39 11 chr4 70471288 70471936 -131856411 + L1MA8 LINE L1 5471 6136 -155 1468 138 5 9 chr4 70472262 70472486 -131855861 + MER4B LTR ERV1 388 610 0 919 205 0 6 chr4 70472548 70472714 -131855633 + AluJo SINE Alu 14 178 -134 33 25 0 0 chr4 70472728 70472768 -131855579 + AT_rich Low_complexity Low_complexity 1 40 0 551 201 24 6 chr4 70473306 70473446 -131854901 - MSTD LTR MaLR -2 394 227 2103 131 10 0 chr4 70473889 70474195 -131854152 - AluSx SINE Alu -3 309 1 21 57 0 0 chr4 70474443 70474478 -131853869 + AT_rich Low_complexity Low_complexity 1 35 0 22 70 0 0 chr4 70474579 70474622 -131853725 + AT_rich Low_complexity Low_complexity 1 43 0 2195 134 28 3 chr4 70474962 70475319 -131853028 + L1PB4 LINE L1 5789 6154 -2 2157 117 0 13 chr4 70475366 70475664 -131852683 + AluSg SINE Alu 1 294 -16 306 280 73 27 chr4 70475710 70475860 -131852487 + L1M LINE L1 5267 5423 -819 1746 163 137 13 chr4 70475914 70476294 -131852053 - MSTA LTR MaLR 0 428 2 227 294 0 0 chr4 70676449 70676500 -131651847 + MIR SINE MIR 70 120 -142 28 71 0 0 chr4 70677015 70677071 -131651276 + AT_rich Low_complexity Low_complexity 1 56 0 316 299 60 30 chr4 70677236 70677437 -131650910 - L1ME LINE L1 -384 5786 5580 338 342 38 19 chr4 70677546 70677704 -131650643 - L1ME LINE L1 -1341 4805 4645 251 250 38 38 chr4 70677777 70677909 -131650438 - L1ME LINE L1 -2579 3567 3436 1145 314 134 25 chr4 70677966 70678960 -131649387 - L1ME LINE L1 -2834 3312 2211 180 0 0 0 chr4 70679879 70679899 -131648448 + (T)n Simple_repeat Simple_repeat 1 20 0 512 100 0 11 chr4 70680304 70680394 -131647953 + (GA)n Simple_repeat Simple_repeat 2 90 0 24 0 0 0 chr4 70680420 70680444 -131647903 + AT_rich Low_complexity Low_complexity 1 24 0 2330 88 6 6 chr4 70682502 70682831 -131645516 - L1P4 LINE L1 -489 5679 5351 2886 97 37 0 chr4 70682832 70683264 -131645083 + L1PA13 LINE L1 5713 6160 -3 833 234 28 9 chr4 70683970 70684188 -131644159 + L1MB7 LINE L1 4613 4834 -1312 19302 95 18 4 chr4 70684206 70687830 -131640517 - L1PA7 LINE L1 -5 6149 2484 2858 205 52 9 chr4 70687834 70688507 -131639840 + L1MB7 LINE L1 5276 5977 -207 277 310 76 33 chr4 70688490 70688674 -131639673 - HAL1 LINE L1 -889 1618 1427 * 1026 167 0 0 chr4 70688930 70689098 -131639249 - AluSg/x SINE Alu -1 309 142 394 167 15 0 chr4 70689126 70689192 -131639155 - AluS SINE Alu -236 67 1 1237 220 42 78 chr4 70689307 70689949 -131638398 - L1MC5 LINE L1 -224 7737 7119 1152 230 81 69 chr4 70689953 70690400 -131637947 + MLT1C LTR MaLR 16 467 0 1250 246 19 96 chr4 70690401 70691010 -131637337 - L1MC5 LINE L1 -838 7123 6540 21 0 0 0 chr4 70691179 70691200 -131637147 + AT_rich Low_complexity Low_complexity 1 21 0 314 23 0 23 chr4 70691772 70691816 -131636531 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 884 140 17 11 chr4 70691844 70692022 -131636325 + CT-rich Low_complexity Low_complexity 2 180 0 289 106 43 0 chr4 70692022 70692069 -131636278 + T-rich Low_complexity Low_complexity 4 52 0 1157 170 15 5 chr4 70692223 70692423 -131635924 - MER47A DNA MER2_type -164 202 1 196 320 51 26 chr4 70692546 70692624 -131635723 + MIR SINE MIR 19 98 -110 200 277 0 0 chr4 70692661 70692708 -131635639 + MIR SINE MIR 213 259 -3 21 36 0 0 chr4 70695465 70695493 -131632854 + AT_rich Low_complexity Low_complexity 1 28 0 198 71 0 0 chr4 70696633 70696661 -131631686 + (TTTTC)n Simple_repeat Simple_repeat 4 31 0 1871 175 12 29 chr4 70696669 70697012 -131631335 + MER1B DNA MER1_type 1 337 0 228 192 10 0 chr4 70697025 70697079 -131631268 - MIR SINE MIR -62 146 99 237 330 10 68 chr4 70698381 70698484 -131629863 - MIR SINE MIR -73 189 93 938 168 117 5 chr4 70698511 70698707 -131629640 - MER20 DNA MER1_type -1 218 1 2711 210 8 0 chr4 70698859 70699363 -131628984 + Tigger7 DNA MER2_type 6 513 -1974 617 161 0 0 chr4 70699371 70699464 -131628883 + Tigger7 DNA MER2_type 2395 2487 0 395 252 8 73 chr4 70699484 70699566 -131628781 - MIR SINE MIR -107 155 82 769 253 11 11 chr4 70699566 70699744 -131628603 + MER45A DNA AcHobo 1 178 0 395 252 8 73 chr4 70699744 70699784 -131628563 - MIR SINE MIR -180 82 41 506 326 63 80 chr4 70699843 70700254 -131628093 - L2 LINE L2 0 3272 2869 237 312 78 54 chr4 70700275 70700480 -131627867 - MLT1I LTR MaLR -22 387 178 397 326 46 8 chr4 70701184 70701344 -131627003 + MIR SINE MIR 3 166 -63 432 278 91 48 chr4 70701357 70701566 -131626781 - MIR SINE MIR 0 262 45 215 236 0 0 chr4 70701737 70701792 -131626555 + (TA)n Simple_repeat Simple_repeat 1 55 0 22 0 0 0 chr4 70702117 70702139 -131626208 + AT_rich Low_complexity Low_complexity 1 22 0 7408 36 2 0 chr4 70702473 70703828 -131624519 - L1PA4 LINE L1 -3 6152 4794 15726 30 2 0 chr4 70703828 70705728 -131622619 + L1PA4 LINE L1 2900 4803 -1343 2191 127 3 0 chr4 70705800 70706107 -131622240 + AluSp SINE Alu 3 310 -3 394 370 39 11 chr4 70706435 70706616 -131621731 + MER5A DNA MER1_type 1 186 -3 646 265 148 0 chr4 70707092 70707254 -131621093 + MER5A DNA MER1_type 4 189 0 22 0 0 0 chr4 70707524 70707546 -131620801 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 70707774 70707795 -131620552 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 70708281 70708303 -131620044 + AT_rich Low_complexity Low_complexity 1 22 0 249 214 0 0 chr4 70708992 70709048 -131619299 + A-rich Low_complexity Low_complexity 1 56 0 207 200 0 0 chr4 70710685 70710730 -131617617 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 23 114 0 0 chr4 70711214 70711328 -131617019 + AT_rich Low_complexity Low_complexity 1 114 0 1978 128 0 3 chr4 70711729 70712031 -131616316 - AluSx SINE Alu 0 301 1 565 354 37 73 chr4 70712329 70712891 -131615456 - L3 LINE CR1 -17 1560 1019 1760 183 31 14 chr4 70712939 70713288 -131615059 + MLT2D LTR ERVL 3 357 -57 220 228 65 11 chr4 70713293 70713385 -131614962 + (TA)n Simple_repeat Simple_repeat 2 98 0 269 132 0 0 chr4 70713391 70713439 -131614908 + MLT2C2 LTR ERVL 416 456 -8 304 176 71 24 chr4 70713455 70713540 -131614807 - L3 LINE CR1 -804 773 685 205 358 46 9 chr4 70714221 70714330 -131614017 - MIR SINE MIR -13 249 137 1342 224 39 33 chr4 70714341 70714671 -131613676 + MER58B DNA MER1_type 7 338 -3 304 298 79 9 chr4 70715592 70715706 -131612641 - MIR3 SINE MIR -23 185 64 356 223 242 38 chr4 70716119 70716276 -131612071 - Charlie8 DNA MER1_type -2197 220 32 1009 102 6 60 chr4 70716276 70716443 -131611904 + AluSg/x SINE Alu 111 268 -44 25 0 0 0 chr4 70717654 70717679 -131610668 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr4 70717817 70717838 -131610509 + AT_rich Low_complexity Low_complexity 1 21 0 30 45 0 0 chr4 70717867 70717911 -131610436 + AT_rich Low_complexity Low_complexity 1 44 0 291 279 76 29 chr4 70718206 70718378 -131609969 - L2 LINE L2 -206 3107 2928 390 329 48 20 chr4 70718520 70718815 -131609532 + L1MEc LINE L1 1454 1756 -4640 2059 110 7 0 chr4 70718970 70719261 -131609086 + AluSx SINE Alu 19 311 -1 295 117 78 52 chr4 70719261 70719328 -131609019 + MER4C LTR ERV1 8 79 -386 222 143 0 20 chr4 70719353 70719402 -131608945 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 789 242 45 25 chr4 70719442 70719792 -131608555 + MER4C LTR ERV1 158 465 0 376 344 55 35 chr4 70719803 70720207 -131608140 + L1MEc LINE L1 1929 2340 -4056 1315 270 92 38 chr4 70720225 70720804 -131607543 + L2 LINE L2 2688 3313 0 1032 236 57 41 chr4 70721260 70721437 -131606910 + MLT1A2 LTR MaLR 1 174 -200 189 0 0 0 chr4 70721437 70721458 -131606889 + (TC)n Simple_repeat Simple_repeat 1 21 0 1032 236 57 41 chr4 70721458 70721648 -131606699 + MLT1A2 LTR MaLR 174 374 0 1405 191 15 88 chr4 70722698 70723097 -131605250 + MLT1A2 LTR MaLR 1 370 -4 457 276 162 51 chr4 70723609 70724050 -131604297 + MLT1H LTR MaLR 1 549 0 206 403 45 9 chr4 70724274 70724495 -131603852 - MIR SINE MIR -1 261 33 1696 207 55 9 chr4 70725842 70726185 -131602162 - MLT1A1 LTR MaLR -6 359 1 25 51 0 0 chr4 70726547 70726586 -131601761 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr4 70728166 70728196 -131600151 + AT_rich Low_complexity Low_complexity 1 30 0 2326 143 30 41 chr4 70728288 70728727 -131599620 + Tigger2a DNA MER2_type 1 434 0 202 345 194 0 chr4 70728745 70728884 -131599463 + MIR SINE MIR 5 170 -92 187 367 0 22 chr4 70729115 70729205 -131599142 + MIR SINE MIR 78 165 -97 560 321 36 13 chr4 70729937 70730161 -131598186 + MIR SINE MIR 1 229 -33 392 128 14 163 chr4 70730163 70730304 -131598043 - MER96B DNA MER1_type? -189 228 109 562 262 37 18 chr4 70730308 70730472 -131597875 - MLT1A2 LTR MaLR -52 322 156 2050 119 7 13 chr4 70730475 70730777 -131597570 - AluSp SINE Alu -13 300 1 592 260 64 51 chr4 70730834 70730945 -131597402 + MLT1L LTR MaLR 142 250 -365 1591 220 53 33 chr4 70730945 70731399 -131596948 - MLT1C LTR MaLR 0 467 5 592 260 64 51 chr4 70731399 70731522 -131596825 + MLT1L LTR MaLR 250 379 -236 296 198 86 0 chr4 70731604 70731685 -131596662 + MLT1L LTR MaLR 524 611 -4 195 129 0 0 chr4 70731783 70731814 -131596533 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1579 220 6 8 chr4 70732927 70733290 -131595057 - L1MB3 LINE L1 -2 6181 5820 43749 41 5 1 chr4 70733296 70739431 -131588916 + L1PA3 LINE L1 1 6155 0 2226 152 29 11 chr4 70739440 70739786 -131588561 - L1MB3 LINE L1 -340 5831 5476 264 59 0 0 chr4 70739786 70739820 -131588527 + (TG)n Simple_repeat Simple_repeat 1 34 0 2226 152 29 11 chr4 70739820 70739855 -131588492 - L1MB3 LINE L1 -695 5476 5443 230 307 117 29 chr4 70739882 70740087 -131588260 + L2 LINE L2 1560 1782 -1532 1305 296 45 44 chr4 70740088 70740900 -131587447 - L2 LINE L2 -1 3312 2487 1712 186 11 0 chr4 70741058 70741365 -131586982 + AluJo SINE Alu 1 310 0 260 357 71 0 chr4 70741528 70741640 -131586707 + L2 LINE L2 2968 3087 -226 181 318 93 0 chr4 70742086 70742193 -131586154 + MIR SINE MIR 90 206 -56 426 73 132 0 chr4 70742410 70742478 -131585869 - MADE1 DNA Mariner -3 77 1 185 278 56 56 chr4 70742933 70743041 -131585306 - L2 LINE L2 -898 2416 2309 301 344 88 26 chr4 70743123 70743315 -131585032 + L2 LINE L2 2855 3058 -214 415 123 0 0 chr4 70743420 70743485 -131584862 - AluSc SINE Alu -13 296 232 1913 103 4 0 chr4 70743561 70743860 -131584487 + L1PA7 LINE L1 5865 6164 0 608 305 62 8 chr4 70747070 70747315 -131581032 + MIR SINE MIR 6 262 0 284 47 0 23 chr4 70747565 70747608 -131580739 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 253 370 101 52 chr4 70749600 70750006 -131578341 + L2 LINE L2 2443 2868 -446 224 250 17 0 chr4 70751464 70751524 -131576823 + CT-rich Low_complexity Low_complexity 2 62 0 975 255 91 54 chr4 70751843 70752251 -131576096 + LTR53 LTR ERVL 1 423 -96 21 0 0 0 chr4 70752703 70752724 -131575623 + AT_rich Low_complexity Low_complexity 1 21 0 198 304 13 63 chr4 70752859 70752938 -131575409 - L2 LINE L2 0 3313 3239 846 181 0 42 chr4 70752974 70753140 -131575207 + MER6B DNA MER2_type 52 210 0 344 348 180 0 chr4 70754571 70754821 -131573526 + LTR16A LTR ERVL 146 440 -10 297 355 24 24 chr4 70754831 70755000 -131573347 + HERV16 LTR ERVL 3 171 -4825 3266 306 81 41 chr4 70755288 70757436 -131570911 + HERV16 LTR ERVL 571 2847 -2149 1719 342 41 28 chr4 70757416 70758471 -131569876 + MERVL LTR ERVL 4259 5326 -438 * 191 313 62 0 chr4 70758508 70758572 -131569775 + L3 LINE CR1 1203 1270 -307 406 248 38 0 chr4 70758645 70758750 -131569597 + L3 LINE CR1 1427 1535 -42 2193 138 22 6 chr4 70759001 70759356 -131568991 + MER47A DNA MER2_type 1 361 -5 31 26 0 0 chr4 70759507 70759545 -131568802 + AT_rich Low_complexity Low_complexity 1 38 0 2517 70 0 0 chr4 70759930 70760231 -131568116 - AluY SINE Alu -10 301 1 1550 190 123 36 chr4 70761610 70762026 -131566321 - MSTB2 LTR MaLR 0 457 6 786 301 86 47 chr4 70762130 70762539 -131565808 + LTR33 LTR ERVL 35 459 -62 426 112 22 11 chr4 70762728 70762817 -131565530 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 918 292 106 7 chr4 70764921 70765222 -131563125 + LTR16C LTR ERVL 103 433 -58 4155 197 49 17 chr4 70765241 70765390 -131562957 - MER54A LTR ERVL 0 901 758 1755 193 0 3 chr4 70765390 70765686 -131562661 - AluJb SINE Alu -17 295 1 4155 197 49 17 chr4 70765686 70766409 -131561938 - MER54A LTR ERVL -143 758 1 248 0 31 0 chr4 70766578 70766610 -131561737 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 390 303 104 30 chr4 70766722 70766953 -131561394 + MERVL LTR ERVL 4643 4890 -595 2030 173 29 48 chr4 70766963 70767349 -131560998 + MLT2A2 LTR ERVL 1 372 -182 2330 109 0 0 chr4 70767349 70767651 -131560696 - AluSc SINE Alu -5 304 3 2030 173 29 48 chr4 70767651 70767823 -131560524 + MLT2A2 LTR ERVL 372 546 -8 24 0 0 0 chr4 70768012 70768036 -131560311 + AT_rich Low_complexity Low_complexity 1 24 0 1126 102 61 5 chr4 70768040 70768236 -131560111 - L1MA5 LINE L1 -8 6292 6086 919 291 71 31 chr4 70768707 70769057 -131559290 + LTR16C LTR ERVL 89 452 -39 226 241 35 23 chr4 70769057 70769144 -131559203 + MER103 DNA DNA 32 119 -47 976 260 121 10 chr4 70769418 70769806 -131558541 + MER110A LTR ERV1 36 466 -2 183 267 17 17 chr4 70769953 70770013 -131558334 - MIR SINE MIR -25 237 178 1932 196 25 26 chr4 70770013 70770478 -131557869 + MER89 LTR ERV1 1 559 0 439 298 113 0 chr4 70770480 70770631 -131557716 - MIR SINE MIR -83 179 12 2021 240 44 36 chr4 70770674 70771291 -131557056 + MER92B LTR ERV1 1 622 -14 1222 147 105 11 chr4 70771305 70771590 -131556757 - MER33 DNA MER1_type -6 318 7 299 253 25 25 chr4 70772565 70772644 -131555703 - L2 LINE L2 -8 3305 3227 1837 164 19 28 chr4 70773701 70774060 -131554287 + L1MB7 LINE L1 5813 6168 -16 256 206 55 0 chr4 70774167 70774240 -131554107 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 197 325 62 0 chr4 70776620 70776700 -131551647 + L2 LINE L2 2731 2815 -499 1400 281 170 15 chr4 70777087 70777803 -131550544 - L2 LINE L2 -564 2750 1924 1433 171 64 46 chr4 70778906 70779234 -131549113 - THE1C LTR MaLR -41 334 1 4400 270 68 23 chr4 70779274 70780731 -131547616 + ERVL-F LTR ERVL 4121 5643 -121 270 250 25 0 chr4 70780745 70780825 -131547522 + Ricksha DNA DNA 264 345 -1701 668 317 90 55 chr4 70780825 70781314 -131547033 + MLT2F LTR ERVL 1 506 -157 276 149 0 0 chr4 70781519 70781566 -131546781 + (GA)n Simple_repeat Simple_repeat 2 48 0 353 324 106 8 chr4 70781978 70782234 -131546113 + L2 LINE L2 1802 2082 -1232 245 407 66 32 chr4 70782275 70782653 -131545694 + L2 LINE L2 2442 2832 -482 182 304 0 0 chr4 70782824 70782880 -131545467 - L2 LINE L2 0 3313 3258 207 0 0 0 chr4 70783145 70783168 -131545179 + (TATG)n Simple_repeat Simple_repeat 4 26 0 13451 150 37 12 chr4 70784307 70786667 -131541680 + Tigger1 DNA MER2_type 1 2418 0 604 232 7 26 chr4 70786772 70786923 -131541424 - LTR7 LTR ERV1 0 450 303 323 317 48 0 chr4 70787381 70787485 -131540862 + L2 LINE L2 3205 3313 0 308 237 96 37 chr4 70787611 70787746 -131540601 + L1ME4a LINE L1 5974 6116 -5 434 275 58 7 chr4 70787888 70788026 -131540321 - MIR SINE MIR -116 146 2 2009 9 0 0 chr4 70788490 70788711 -131539636 - AluYb8 SINE Alu 0 318 98 2144 121 0 13 chr4 70788715 70789028 -131539319 - AluSx SINE Alu -3 309 1 197 363 85 52 chr4 70789060 70789272 -131539075 + L2 LINE L2 2843 3061 -252 195 233 8 42 chr4 70789331 70789451 -131538896 + (TATATG)n Simple_repeat Simple_repeat 3 118 0 4907 188 14 18 chr4 70789502 70790909 -131537438 - L1MB1 LINE L1 -32 6136 4741 2772 57 11 11 chr4 70790985 70791352 -131536995 + L1PA6 LINE L1 5782 6148 -6 25 31 0 0 chr4 70791419 70791451 -131536896 + AT_rich Low_complexity Low_complexity 1 32 0 241 216 32 8 chr4 70791946 70792071 -131536276 + (TA)n Simple_repeat Simple_repeat 1 128 0 257 409 38 8 chr4 70793180 70793312 -131535035 + L2 LINE L2 3137 3272 0 277 240 30 10 chr4 70793825 70793925 -131534422 + (TA)n Simple_repeat Simple_repeat 1 102 0 814 249 63 30 chr4 70794635 70794872 -131533475 - MIR SINE MIR -6 256 12 1074 211 51 15 chr4 70795012 70795411 -131532936 - MLT1D LTR MaLR -6 499 1 1054 240 32 114 chr4 70795500 70796121 -131532226 - HsTC2 DNA Tc2 -45 1853 1284 506 348 70 20 chr4 70796255 70796668 -131531679 - L2 LINE L2 -1995 1319 884 428 320 62 41 chr4 70796668 70796912 -131531435 + MIR SINE MIR 1 249 -13 31 58 0 0 chr4 70796915 70796967 -131531380 + AT_rich Low_complexity Low_complexity 1 52 0 247 343 10 0 chr4 70797038 70797137 -131531210 - L2 LINE L2 -2509 805 706 323 128 0 0 chr4 70797173 70797220 -131531127 + MSTB1 LTR MaLR 3 49 -383 4259 233 70 11 chr4 70797223 70798267 -131530080 + MSTB1-int LTR MaLR 245 1349 -302 9239 175 24 11 chr4 70798269 70801245 -131527102 + L1PB1 LINE L1 3149 6149 -2 1571 168 27 17 chr4 70801269 70801566 -131526781 + MSTB1-int LTR MaLR 1337 1636 -15 2220 153 39 50 chr4 70801580 70801711 -131526636 + MSTB1 LTR MaLR 1 132 -300 2716 32 0 0 chr4 70801711 70802022 -131526325 - AluY SINE Alu 0 311 1 2220 153 39 50 chr4 70802022 70802327 -131526020 + MSTB1 LTR MaLR 132 432 0 38 0 0 0 chr4 70802983 70803021 -131525326 + AT_rich Low_complexity Low_complexity 1 38 0 289 277 35 43 chr4 70803205 70803346 -131525001 - MIR SINE MIR -70 192 53 391 319 164 5 chr4 70803366 70803579 -131524768 + MIR SINE MIR 2 248 -14 228 111 0 0 chr4 70803590 70803626 -131524721 + (CAT)n Simple_repeat Simple_repeat 2 37 0 213 250 21 0 chr4 70804888 70804936 -131523411 - L2 LINE L2 -15 3257 3209 910 146 24 0 chr4 70804990 70805155 -131523192 - L1MB1 LINE L1 -1 6167 5999 5053 29 0 0 chr4 70805182 70805773 -131522574 - L1PA2 LINE L1 -51 6104 5514 2657 30 0 0 chr4 70805774 70806074 -131522273 + AluY SINE Alu 1 300 -11 1669 196 35 19 chr4 70806319 70806687 -131521660 + MLT1A2 LTR MaLR 1 374 0 1464 209 39 64 chr4 70807114 70807520 -131520827 - MSTD LTR MaLR 0 396 1 596 307 42 81 chr4 70807606 70807631 -131520716 + L2 LINE L2 2970 2994 -319 1569 161 104 23 chr4 70807631 70807978 -131520369 + THE1C LTR MaLR 1 375 0 596 307 42 81 chr4 70807978 70808310 -131520037 + L2 LINE L2 2994 3313 0 219 328 16 0 chr4 70808584 70808648 -131519699 + MIR SINE MIR 60 124 -84 238 253 108 0 chr4 70808753 70808836 -131519511 - MER103 DNA DNA -20 146 55 2440 73 3 0 chr4 70809080 70809381 -131518966 + AluY SINE Alu 1 302 -9 187 250 213 38 chr4 70810047 70810127 -131518220 + MIR SINE MIR 74 167 -95 1938 117 34 27 chr4 70810255 70810553 -131517794 + AluSg SINE Alu 1 300 -10 23 33 0 0 chr4 70811050 70811080 -131517267 + AT_rich Low_complexity Low_complexity 1 30 0 21530 173 27 37 chr4 70811470 70814607 -131513740 + L1P3 LINE L1 10 3103 -3358 1881 132 0 0 chr4 70814607 70814865 -131513482 + AluSx SINE Alu 39 296 -16 21530 173 27 37 chr4 70814865 70816910 -131511437 + L1P3 LINE L1 3103 5166 -1295 11964 122 24 27 chr4 70816914 70818664 -131509683 - L1P3 LINE L1 -3438 3023 1241 190 0 32 32 chr4 70818664 70818695 -131509652 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 11964 122 24 27 chr4 70818695 70819912 -131508435 - L1P3 LINE L1 -5220 1241 21 1419 274 109 82 chr4 70819959 70821353 -131506994 - HAL1 LINE L1 -1052 1455 24 21 36 0 0 chr4 70822354 70822382 -131505965 + AT_rich Low_complexity Low_complexity 1 28 0 203 295 13 26 chr4 70827344 70827422 -131500925 - L2 LINE L2 0 3313 3237 244 341 11 11 chr4 70827543 70827634 -131500713 + MLT1J2 LTR MaLR 56 146 -304 276 100 0 0 chr4 70827894 70827934 -131500413 + (CA)n Simple_repeat Simple_repeat 2 41 0 232 333 41 27 chr4 70828099 70828246 -131500101 + MER89 LTR ERV1 382 530 -29 248 272 33 11 chr4 70828279 70828371 -131499976 + MLT1J1 LTR MaLR 353 446 0 257 283 11 125 chr4 70828509 70828693 -131499654 - L2 LINE L2 -218 3054 2892 21 0 0 0 chr4 70828995 70829016 -131499331 + AT_rich Low_complexity Low_complexity 1 21 0 381 291 202 25 chr4 70829479 70829761 -131498586 - L2 LINE L2 -8 3305 2974 268 314 114 21 chr4 70831102 70831242 -131497105 - L2 LINE L2 0 3313 3161 22055 35 1 2 chr4 70831853 70834560 -131493787 - L1P LINE L1 -1526 4620 1916 3501 24 0 0 chr4 70834560 70834971 -131493376 + L1P LINE L1 4624 5034 -1112 2690 56 15 0 chr4 70834971 70835301 -131493046 + L1PA3 LINE L1 5808 6152 -3 232 159 23 0 chr4 70835351 70835395 -131492952 + MIR SINE MIR 98 142 -66 522 302 89 22 chr4 70836386 70836565 -131491782 + MIR SINE MIR 67 257 -5 1507 212 163 51 chr4 70836568 70837042 -131491305 + MER39 LTR ERV1 5 707 0 2719 241 99 46 chr4 70838773 70839848 -131488499 + Zaphod DNA AcHobo 9 1141 -2890 618 222 8 0 chr4 70839920 70840046 -131488301 + MIR SINE MIR 81 207 -55 2189 126 0 0 chr4 70840785 70841095 -131487252 - AluSx SINE Alu -2 310 1 446 242 94 0 chr4 70841697 70841825 -131486522 + MIR SINE MIR 110 249 -13 596 323 129 27 chr4 70842199 70842720 -131485627 + L2 LINE L2 1705 2278 -1036 26 50 0 0 chr4 70843216 70843256 -131485091 + AT_rich Low_complexity Low_complexity 1 40 0 1633 168 16 44 chr4 70843259 70843364 -131484983 + AluJb SINE Alu 1 107 -205 1786 127 136 15 chr4 70843364 70843696 -131484651 + THE1C LTR MaLR 3 374 -1 9810 123 45 8 chr4 70843697 70845222 -131483125 + THE1C-int LTR MaLR 1 1580 0 2053 137 56 11 chr4 70845222 70845581 -131482766 + THE1C LTR MaLR 1 375 0 1633 168 16 44 chr4 70845581 70845793 -131482554 + AluJb SINE Alu 105 312 0 276 30 0 0 chr4 70845941 70845974 -131482373 + (TA)n Simple_repeat Simple_repeat 2 34 0 1576 160 30 93 chr4 70847237 70847636 -131480711 - MLT1A2 LTR MaLR 0 374 1 2579 252 122 61 chr4 70847636 70848541 -131479806 - MLT1A2-int LTR MaLR 0 1735 887 1522 136 0 0 chr4 70848541 70848791 -131479556 - L1MA5 LINE L1 -2 6298 6049 2579 252 122 61 chr4 70848791 70849406 -131478941 - MLT1A2-int LTR MaLR -848 887 5 1958 189 20 96 chr4 70849412 70849972 -131478375 - MLT2B1 LTR ERVL -3 517 1 1514 199 26 40 chr4 70852129 70852480 -131475867 + L1ME3A LINE L1 5825 6170 0 485 275 89 52 chr4 70852557 70852931 -131475416 - Charlie8 DNA MER1_type -2140 277 10 364 306 255 5 chr4 70853221 70853417 -131474930 - MIR SINE MIR -6 256 12 200 333 60 17 chr4 70853476 70853508 -131474839 - MIR SINE MIR -66 142 113 3302 137 25 8 chr4 70853508 70854026 -131474321 - MER1A DNA MER1_type 0 527 1 200 333 60 17 chr4 70854026 70854110 -131474237 - MIR SINE MIR -95 113 21 25 0 0 0 chr4 70855257 70855282 -131473065 + AT_rich Low_complexity Low_complexity 1 25 0 271 363 49 0 chr4 70855445 70855547 -131472800 - L2 LINE L2 -16 3256 3150 2060 331 154 16 chr4 70856394 70857761 -131470586 + L2 LINE L2 66 1620 -1694 298 170 245 19 chr4 70857767 70857873 -131470474 - MLT1G LTR MaLR -13 529 400 689 216 50 139 chr4 70857973 70858311 -131470036 - MLT1G LTR MaLR -283 312 5 1809 316 99 57 chr4 70858322 70859615 -131468732 + L2 LINE L2 1629 2976 -338 29 60 0 0 chr4 70859884 70859934 -131468413 + AT_rich Low_complexity Low_complexity 1 50 0 180 0 0 0 chr4 70860264 70860284 -131468063 + (T)n Simple_repeat Simple_repeat 1 20 0 1977 122 38 27 chr4 70862455 70862824 -131465523 + THE1C LTR MaLR 3 375 0 2054 124 0 0 chr4 70863373 70863647 -131464700 - AluSx SINE Alu -38 274 1 28 61 0 0 chr4 70863895 70863944 -131464403 + AT_rich Low_complexity Low_complexity 1 49 0 507 111 44 0 chr4 70864247 70864337 -131464010 - L1MA10 LINE L1 -2 6332 6239 366 91 0 0 chr4 70864356 70864411 -131463936 + (TG)n Simple_repeat Simple_repeat 1 55 0 645 180 13 11 chr4 70864411 70864565 -131463782 - L1MB1 LINE L1 -14 6157 6003 2200 123 0 13 chr4 70866290 70866606 -131461741 - AluSx SINE Alu 0 312 1 1497 192 11 4 chr4 70866984 70867244 -131461103 - AluJo SINE Alu -30 282 21 338 226 75 0 chr4 70867297 70867390 -131460957 + MIR SINE MIR 127 226 -36 1755 147 167 11 chr4 70867455 70867802 -131460545 + MSTA LTR MaLR 1 401 -27 26 30 0 0 chr4 70867815 70867848 -131460499 + AT_rich Low_complexity Low_complexity 1 33 0 818 45 0 27 chr4 70867850 70867961 -131460386 - L1PA5 LINE L1 0 6154 6047 230 158 0 0 chr4 70867961 70867999 -131460348 + MSTA LTR MaLR 391 428 0 21 0 0 0 chr4 70868778 70868799 -131459548 + AT_rich Low_complexity Low_complexity 1 21 0 362 246 80 40 chr4 70868893 70869068 -131459279 + MIR SINE MIR 80 261 -1 189 171 0 0 chr4 70872397 70872432 -131455915 + T-rich Low_complexity Low_complexity 1 35 0 229 254 15 15 chr4 70873012 70873079 -131455268 - Charlie7 DNA MER1_type -2510 102 36 205 294 49 92 chr4 70873102 70873286 -131455061 + MER5B DNA MER1_type 3 178 0 369 86 69 0 chr4 70873402 70873460 -131454887 + MLT1C LTR MaLR 1 62 -405 2205 108 0 0 chr4 70873654 70873949 -131454398 - AluSc SINE Alu -14 295 1 1277 163 10 0 chr4 70875530 70875739 -131452608 + MER2 DNA MER2_type 1 211 -134 28 48 0 0 chr4 70875739 70875781 -131452566 + AT_rich Low_complexity Low_complexity 1 42 0 1178 322 147 42 chr4 70876179 70877487 -131450860 - L2 LINE L2 -4 3309 1871 2396 73 10 0 chr4 70877496 70877798 -131450549 - AluSx SINE Alu -4 308 4 591 359 60 26 chr4 70878300 70878684 -131449663 - LTR33 LTR ERVL -99 422 26 5303 194 41 52 chr4 70878686 70879491 -131448856 + L1ME1 LINE L1 137 924 -5616 1412 168 135 14 chr4 70879491 70879788 -131448559 + MER1B DNA MER1_type 5 337 0 5303 194 41 52 chr4 70879788 70880282 -131448065 + L1ME1 LINE L1 924 1422 -5118 242 245 43 75 chr4 70881359 70881453 -131446894 - L2 LINE L2 -4 3309 3219 217 291 81 35 chr4 70882873 70882959 -131445388 + L2 LINE L2 3191 3280 -33 233 209 15 0 chr4 70883331 70883398 -131444949 + CT-rich Low_complexity Low_complexity 3 70 0 956 211 118 57 chr4 70883437 70883528 -131444819 - MLT2D LTR ERVL 0 414 330 2333 99 0 0 chr4 70883528 70883830 -131444517 + AluSg SINE Alu 1 302 -8 956 211 118 57 chr4 70883830 70883946 -131444401 - MLT2D LTR ERVL -84 330 222 2335 113 13 53 chr4 70883946 70884325 -131444022 - THE1B LTR MaLR 0 364 1 956 211 118 57 chr4 70884325 70884499 -131443848 - MLT2D LTR ERVL -192 222 9 1067 306 24 38 chr4 70884871 70885289 -131443058 - LTR16C LTR ERVL -35 456 45 203 359 77 0 chr4 70885606 70885684 -131442663 + L2 LINE L2 3156 3239 -33 321 260 114 24 chr4 70887105 70887228 -131441119 + MIR SINE MIR 100 233 -29 866 231 22 0 chr4 70887280 70887462 -131440885 - MER5A DNA MER1_type -3 186 1 1473 315 127 27 chr4 70888391 70889439 -131438908 + L2 LINE L2 2137 3313 0 849 268 43 65 chr4 70889517 70890305 -131438042 + L1ME1 LINE L1 1623 2329 -4307 6675 245 36 33 chr4 70890305 70893290 -131435057 + L1ME1 LINE L1 3556 6548 -12 40 0 0 0 chr4 70894084 70894124 -131434223 + AT_rich Low_complexity Low_complexity 1 40 0 331 304 134 74 chr4 70894964 70895247 -131433100 - L2 LINE L2 -178 3135 2836 235 256 47 12 chr4 70896174 70896260 -131432087 + L1ME4a LINE L1 5410 5498 -623 400 307 145 0 chr4 70896261 70896544 -131431803 + L1ME4a LINE L1 5520 5843 -278 311 336 0 27 chr4 70896975 70897085 -131431262 - MER5B DNA MER1_type 0 178 72 21 0 0 0 chr4 70897280 70897301 -131431046 + AT_rich Low_complexity Low_complexity 1 21 0 267 140 0 0 chr4 70897680 70897730 -131430617 + (CA)n Simple_repeat Simple_repeat 2 51 0 2435 204 94 20 chr4 70898862 70899470 -131428877 - Tigger6 DNA MER2_type 0 1597 945 300 295 52 43 chr4 70899604 70899814 -131428533 - Tigger3(Golem) DNA MER2_type -1472 1557 1346 1697 173 65 3 chr4 70899830 70900137 -131428210 - Tigger6 DNA MER2_type -756 327 2 8893 130 22 91 chr4 70900227 70902048 -131426299 + pTR5 LTR ERV1 743 2438 0 2274 83 0 0 chr4 70902264 70902554 -131425793 + AluY SINE Alu 7 296 -15 251 156 47 16 chr4 70902806 70902870 -131425477 - L1ME1 LINE L1 -5 6161 6096 361 264 9 36 chr4 70902870 70902980 -131425367 - U6 snRNA snRNA 0 107 1 232 346 96 37 chr4 70903114 70903302 -131425045 - MIR SINE MIR -10 252 54 736 300 68 0 chr4 70903369 70903589 -131424758 - MIR SINE MIR 0 262 28 349 276 161 10 chr4 70903867 70904059 -131424288 + L2 LINE L2 2924 3144 -169 245 299 43 43 chr4 70904059 70904176 -131424171 - L1MC4a LINE L1 -1217 6591 6475 529 319 50 54 chr4 70904506 70905060 -131423287 - HAL1b LINE L1 -736 612 61 1649 166 0 0 chr4 70907783 70908072 -131420275 - L1MA6 LINE L1 -5 6295 6007 36 0 0 0 chr4 70908079 70908115 -131420232 + AT_rich Low_complexity Low_complexity 1 36 0 3907 100 21 0 chr4 70908117 70908687 -131419660 - L1PA13 LINE L1 -6 6157 5576 315 100 0 0 chr4 70908687 70908737 -131419610 + L1P4 LINE L1 5440 5489 -679 186 50 75 0 chr4 70908859 70908899 -131419448 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 276 298 173 31 chr4 70909967 70910222 -131418125 - L2 LINE L2 -2 3311 3021 329 284 167 43 chr4 70910521 70910845 -131417502 - MLT1L LTR MaLR -29 586 223 306 0 0 0 chr4 70912416 70912450 -131415897 + (TTG)n Simple_repeat Simple_repeat 3 36 0 2192 96 3 3 chr4 70912504 70912795 -131415552 - AluSg SINE Alu -17 293 3 202 336 5 0 chr4 70913453 70913539 -131414808 - MIR SINE MIR -86 122 36 241 250 0 119 chr4 70913637 70913668 -131414679 - MIR SINE MIR 0 262 229 854 156 0 22 chr4 70913668 70913803 -131414544 + FLAM_C SINE Alu 1 132 -1 241 250 0 119 chr4 70913803 70913855 -131414492 - MIR SINE MIR -33 229 189 1930 148 3 3 chr4 70915145 70915435 -131412912 - AluSq SINE Alu -21 292 3 309 27 0 0 chr4 70915576 70915613 -131412734 - MADE1 DNA Mariner -43 37 1 22 88 0 0 chr4 70916265 70916322 -131412025 + AT_rich Low_complexity Low_complexity 1 57 0 1925 156 38 30 chr4 70916351 70916723 -131411624 - THE1C LTR MaLR 0 375 1 8654 142 73 15 chr4 70916723 70918213 -131410134 - THE1C-int LTR MaLR 0 1580 4 1489 162 24 118 chr4 70918216 70918630 -131409717 - THE1C LTR MaLR 0 375 1 230 241 0 0 chr4 70918633 70918687 -131409660 - L1ME LINE L1 -313 5808 5755 314 380 53 8 chr4 70918812 70919075 -131409272 - L1ME LINE L1 -776 5583 5309 240 335 106 12 chr4 70919124 70919294 -131409053 + MIR SINE MIR 76 261 -1 199 218 36 18 chr4 70919969 70920024 -131408323 - L3b LINE CR1 -265 1318 1263 215 294 69 69 chr4 70920168 70920328 -131408019 + MIR SINE MIR 84 243 -19 24 0 0 0 chr4 70920454 70920478 -131407869 + AT_rich Low_complexity Low_complexity 1 24 0 405 266 146 6 chr4 70920883 70921041 -131407306 + MIR SINE MIR 3 182 -80 180 111 0 0 chr4 70921316 70921343 -131407004 + (GA)n Simple_repeat Simple_repeat 2 28 0 234 0 0 0 chr4 70921491 70921517 -131406830 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 21 71 0 0 chr4 70921922 70921964 -131406383 + AT_rich Low_complexity Low_complexity 1 42 0 470 283 36 7 chr4 70922683 70922821 -131405526 - MLT1G1 LTR MaLR 0 595 454 543 283 113 28 chr4 70922851 70923152 -131405195 - MLT1G1 LTR MaLR -196 399 1 429 325 75 91 chr4 70923269 70923696 -131404651 + L2 LINE L2 2853 3272 0 186 71 0 0 chr4 70923745 70923773 -131404574 + (TA)n Simple_repeat Simple_repeat 2 29 0 2117 121 0 0 chr4 70923819 70924109 -131404238 - AluSx SINE Alu -22 290 1 2234 237 93 12 chr4 70924551 70925154 -131403193 - MER82 DNA MER2_type -1 652 1 1749 163 10 13 chr4 70925354 70925654 -131402693 - AluJb SINE Alu -13 299 1 21 0 0 0 chr4 70926525 70926546 -131401801 + AT_rich Low_complexity Low_complexity 1 21 0 1086 232 25 102 chr4 70928128 70928520 -131399827 + MLT1A2 LTR MaLR 1 362 -12 386 299 32 19 chr4 70928719 70928876 -131399471 - MER97c DNA MER1_type? 0 1090 932 33 90 0 0 chr4 70928900 70928989 -131399358 + AT_rich Low_complexity Low_complexity 1 89 0 29 0 0 0 chr4 70929232 70929261 -131399086 + AT_rich Low_complexity Low_complexity 1 29 0 1411 256 61 28 chr4 70929424 70929966 -131398381 - MER97c DNA MER1_type? -490 600 41 2230 79 9 64 chr4 70929989 70930317 -131398030 - AluSq SINE Alu -3 310 1 2099 103 29 15 chr4 70930320 70930661 -131397686 - L1PA10 LINE L1 0 6168 5823 604 82 0 0 chr4 70930661 70930746 -131397601 + L1P4 LINE L1 5594 5678 -490 800 185 0 0 chr4 70931057 70931187 -131397160 + AluJo SINE Alu 1 130 -172 348 111 0 0 chr4 70934574 70934637 -131393710 + (CA)n Simple_repeat Simple_repeat 2 64 0 2470 166 29 15 chr4 70934737 70934870 -131393477 + L1PB4 LINE L1 5657 5787 -386 354 23 0 0 chr4 70934870 70934913 -131393434 + (CA)n Simple_repeat Simple_repeat 2 44 0 2470 166 29 15 chr4 70934913 70935289 -131393058 + L1PB4 LINE L1 5787 6173 0 25 65 0 0 chr4 70936204 70936250 -131392097 + AT_rich Low_complexity Low_complexity 1 46 0 261 0 0 0 chr4 70936687 70936716 -131391631 + (TG)n Simple_repeat Simple_repeat 2 30 0 220 237 0 40 chr4 70936716 70936792 -131391555 + (TATATG)n Simple_repeat Simple_repeat 5 77 0 32 0 0 0 chr4 70936905 70936937 -131391410 + AT_rich Low_complexity Low_complexity 1 32 0 1067 210 47 89 chr4 70937818 70938222 -131390125 + MLT1B LTR MaLR 4 390 0 2130 102 3 25 chr4 70938546 70938861 -131389486 + AluY SINE Alu 1 308 -3 1456 113 5 5 chr4 70938926 70939147 -131389200 - pTR5 LTR ERV1 -2046 392 172 357 214 31 20 chr4 70939150 70939248 -131389099 - LTR30 LTR ERV1 -80 642 544 4522 128 150 32 chr4 70939248 70940255 -131388092 - pTR5 LTR ERV1 -413 2025 741 3985 75 99 5 chr4 70940689 70941266 -131387081 - L1PA7 LINE L1 -2 6152 5522 2235 81 3 0 chr4 70941268 70941575 -131386772 - L1PA7 LINE L1 -989 5157 4850 22 35 0 0 chr4 70941605 70941634 -131386713 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 70941660 70941682 -131386665 + AT_rich Low_complexity Low_complexity 1 22 0 867 153 7 33 chr4 70942414 70942564 -131385783 + AluJo SINE Alu 137 282 -30 219 36 0 0 chr4 70942564 70942592 -131385755 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2346 80 0 13 chr4 70942746 70943059 -131385288 - AluY SINE Alu -2 309 1 573 206 171 25 chr4 70943135 70943334 -131385013 - MIR SINE MIR -2 260 33 1755 238 58 103 chr4 70943382 70944033 -131384314 - MLT1E2 LTR MaLR -2 624 1 1458 268 41 72 chr4 70944033 70944224 -131384123 + MLT1E LTR MaLR 52 247 -346 999 149 0 6 chr4 70944224 70944385 -131383962 - L1PA16 LINE L1 -9 6157 5998 1458 268 41 72 chr4 70944385 70944752 -131383595 + MLT1E LTR MaLR 247 593 0 201 367 57 62 chr4 70944945 70945122 -131383225 - L2 LINE L2 -106 3166 2991 265 325 106 62 chr4 70945275 70945872 -131382475 - L2 LINE L2 -560 2754 2132 21 36 0 0 chr4 70946132 70946160 -131382187 + AT_rich Low_complexity Low_complexity 1 28 0 235 87 72 0 chr4 70946160 70946229 -131382118 + (TATAA)n Simple_repeat Simple_repeat 2 75 0 415 278 146 9 chr4 70946274 70946486 -131381861 + MIR SINE MIR 3 243 -19 549 182 0 0 chr4 70946726 70946814 -131381533 + Tigger7 DNA MER2_type 184 271 -462 * 1186 164 10 0 chr4 70946809 70947004 -131381343 + Tigger7 DNA MER2_type 2291 2487 0 325 302 19 9 chr4 70947289 70947395 -131380952 + CT-rich Low_complexity Low_complexity 2 108 0 442 310 75 14 chr4 70947822 70948035 -131380312 - L1ME LINE L1 -502 5660 5442 537 307 89 6 chr4 70951719 70951898 -131376449 + MIR SINE MIR 53 246 -16 407 268 36 29 chr4 70952375 70952513 -131375834 + MIR3 SINE MIR 23 161 -47 293 250 17 100 chr4 70953563 70953683 -131374664 + L3 LINE CR1 1155 1264 -313 186 368 62 42 chr4 70953727 70953920 -131374427 + L3 LINE CR1 1358 1554 -23 1916 102 11 14 chr4 70955476 70955760 -131372587 + AluSc SINE Alu 27 309 0 26 0 0 0 chr4 70955821 70955847 -131372500 + AT_rich Low_complexity Low_complexity 1 26 0 421 309 133 45 chr4 70955953 70956346 -131372001 + L2 LINE L2 2809 3311 -2 308 268 98 24 chr4 70956949 70957072 -131371275 - MER94 DNA DNA 0 134 3 1911 152 79 15 chr4 70958684 70959026 -131369321 - THE1B LTR MaLR 0 364 1 1592 238 24 60 chr4 70959209 70959713 -131368634 + MLT1D LTR MaLR 20 505 0 2144 244 53 11 chr4 70959830 70960378 -131367969 + MLT1E2 LTR MaLR 56 626 0 206 345 55 9 chr4 70961089 70961199 -131367148 - MIR SINE MIR -124 138 24 1605 133 4 4 chr4 70962057 70962291 -131366056 + AluSx SINE Alu 7 240 -72 381 209 11 55 chr4 70963508 70963599 -131364748 - L2 LINE L2 0 3313 3227 28 61 0 0 chr4 70963705 70963754 -131364593 + AT_rich Low_complexity Low_complexity 1 49 0 32 43 0 0 chr4 70963934 70963980 -131364367 + AT_rich Low_complexity Low_complexity 1 46 0 220 226 0 19 chr4 70963997 70964050 -131364297 + T-rich Low_complexity Low_complexity 2 53 0 24 0 0 0 chr4 70964110 70964134 -131364213 + AT_rich Low_complexity Low_complexity 1 24 0 1775 178 7 7 chr4 70964790 70965094 -131363253 + AluJb SINE Alu 1 304 -8 537 142 26 9 chr4 70965106 70965219 -131363128 + GA-rich Low_complexity Low_complexity 2 116 0 1234 219 17 14 chr4 70967074 70967366 -131360981 - MLT1C LTR MaLR 0 467 175 659 193 12 53 chr4 70967350 70967521 -131360826 - MLT1C LTR MaLR -247 220 57 * 227 325 56 32 chr4 70968215 70968341 -131360006 + MLT1J2 LTR MaLR 204 332 -118 2061 121 24 0 chr4 70968582 70968872 -131359475 - AluSc SINE Alu -12 297 1 4933 58 2 3 chr4 70969826 70970450 -131357897 + L1PA5 LINE L1 5532 6154 0 216 86 0 0 chr4 70970480 70970515 -131357832 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 385 312 145 7 chr4 70970915 70971053 -131357294 - MIR3 SINE MIR -5 203 47 22 0 0 0 chr4 70971137 70971159 -131357188 + AT_rich Low_complexity Low_complexity 1 22 0 9720 166 56 17 chr4 70971249 70975720 -131352627 + L1PB1 LINE L1 2 4821 -2041 2210 111 7 0 chr4 70975720 70976018 -131352329 - AluSq SINE Alu -13 300 1 9720 166 56 17 chr4 70976018 70976215 -131352132 + L1PB1 LINE L1 4821 5009 -1853 5430 98 19 73 chr4 70976209 70976876 -131351471 + L1PB1 LINE L1 5875 6576 -291 * 234 0 0 0 chr4 70976876 70976902 -131351445 + (TG)n Simple_repeat Simple_repeat 2 27 0 5430 98 19 73 chr4 70976902 70977153 -131351194 + L1PB1 LINE L1 6576 6733 -134 2323 72 0 16 chr4 70977153 70977459 -131350888 + AluY SINE Alu 1 301 -10 5430 98 19 73 chr4 70977459 70977585 -131350762 + L1PB1 LINE L1 6733 6864 -3 22 0 0 0 chr4 70977607 70977629 -131350718 + AT_rich Low_complexity Low_complexity 1 22 0 345 119 24 12 chr4 70978842 70978926 -131349421 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 21 57 0 0 chr4 70979664 70979699 -131348648 + AT_rich Low_complexity Low_complexity 1 35 0 4829 162 26 38 chr4 70980191 70981130 -131347217 - L1MA9 LINE L1 0 6312 5386 521 139 0 28 chr4 70981249 70981357 -131346990 - L1MA9 LINE L1 -933 5358 5254 21 0 0 0 chr4 70981358 70981379 -131346968 + AT_rich Low_complexity Low_complexity 1 21 0 5475 91 1 0 chr4 70981379 70982128 -131346219 - L1PA10 LINE L1 -3 6165 5416 884 79 0 0 chr4 70982128 70982254 -131346093 + L1P LINE L1 4296 4421 -1725 475 294 92 70 chr4 70982384 70982854 -131345493 + L1ME3 LINE L1 5486 5965 -197 1544 155 63 7 chr4 70982912 70983196 -131345151 + AluJo SINE Alu 11 310 -2 28 29 0 0 chr4 70983381 70983416 -131344931 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr4 70983434 70983468 -131344879 + AT_rich Low_complexity Low_complexity 1 34 0 77 12 0 0 chr4 70983504 70983588 -131344759 + AT_rich Low_complexity Low_complexity 1 84 0 535 252 47 80 chr4 70983825 70984099 -131344248 - L2 LINE L2 -9 3304 3040 316 323 110 6 chr4 70984768 70984932 -131343415 + MIR3 SINE MIR 22 202 -6 443 213 32 0 chr4 70985158 70985252 -131343095 - L2 LINE L2 -8 3264 3168 186 43 0 0 chr4 70986572 70986595 -131341752 + (TG)n Simple_repeat Simple_repeat 1 23 0 801 286 92 44 chr4 70986746 70987270 -131341077 - MLT1H1 LTR MaLR -2 553 5 302 317 144 5 chr4 70987365 70987567 -131340780 + MIR SINE MIR 20 249 -13 1568 190 111 4 chr4 70987749 70988165 -131340182 + MLT2B3 LTR ERVL 1 507 -46 346 175 0 50 chr4 70988102 70988182 -131340165 + Ricksha DNA DNA 782 857 -1189 * 2209 87 3 13 chr4 70988208 70988506 -131339841 - AluSq SINE Alu -18 295 1 199 350 12 12 chr4 70988696 70988776 -131339571 - L2 LINE L2 -6 3266 3187 649 219 8 0 chr4 70989353 70989476 -131338871 - FLAM_C SINE Alu -19 124 1 52 30 0 0 chr4 70989572 70989638 -131338709 + AT_rich Low_complexity Low_complexity 1 66 0 23 0 0 0 chr4 70989812 70989835 -131338512 + AT_rich Low_complexity Low_complexity 1 23 0 232 328 109 16 chr4 70990564 70990692 -131337655 - L2 LINE L2 0 3313 3174 252 282 35 0 chr4 70990777 70990862 -131337485 - MER94 DNA DNA -36 98 11 2024 201 37 41 chr4 70990862 70991375 -131336972 + Charlie1b DNA MER1_type 1 511 -12 191 333 0 18 chr4 70991514 70991571 -131336776 - L2 LINE L2 -33 3280 3225 22 0 0 0 chr4 70991581 70991603 -131336744 + AT_rich Low_complexity Low_complexity 1 22 0 1640 144 30 0 chr4 70992037 70992307 -131336040 + MER7A DNA MER2_type 2 277 -69 696 266 50 59 chr4 70992366 70992686 -131335661 + MER83C LTR ERV1 47 363 -10 386 208 42 0 chr4 70992693 70992765 -131335582 + MER7A DNA MER2_type 261 335 -1 21 57 0 0 chr4 70992787 70992822 -131335525 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr4 70993554 70993591 -131334756 + AT_rich Low_complexity Low_complexity 1 37 0 195 375 50 0 chr4 70995511 70995591 -131332756 + L2 LINE L2 3177 3260 -12 967 151 47 0 chr4 70997456 70997628 -131330719 - MER39B LTR ERV1 0 653 474 2070 206 24 7 chr4 70997669 70998092 -131330255 + LOR1b LTR ERV1 32 461 0 * 3224 108 11 4 chr4 70998092 70998564 -131329783 - MER39B LTR ERV1 -176 477 3 230 286 14 0 chr4 70998607 70998677 -131329670 + GA-rich Low_complexity Low_complexity 3 73 0 1655 147 56 56 chr4 70998696 70999071 -131329276 + THE1C LTR MaLR 1 375 0 302 289 10 21 chr4 70999136 70999233 -131329114 - L2 LINE L2 0 3313 3218 1006 207 58 0 chr4 70999233 70999441 -131328906 - MER58A DNA MER1_type 0 224 5 4302 20 0 0 chr4 71000350 71000849 -131327498 - L1PA2 LINE L1 -5 6150 5652 593 306 0 6 chr4 71001312 71001472 -131326875 + MIR SINE MIR 60 218 -44 226 167 0 0 chr4 71001985 71002021 -131326326 + MIR SINE MIR 215 250 -12 189 0 0 0 chr4 71003070 71003091 -131325256 + (CA)n Simple_repeat Simple_repeat 2 22 0 214 349 75 28 chr4 71003597 71003703 -131324644 + L2 LINE L2 3154 3264 -8 22 99 0 0 chr4 71003803 71003874 -131324473 + AT_rich Low_complexity Low_complexity 1 71 0 333 333 38 15 chr4 71005076 71005208 -131323139 + MIR SINE MIR 20 154 -108 189 326 28 52 chr4 71006225 71006416 -131321931 + MIR3 SINE MIR 5 217 -45 1066 292 22 29 chr4 71008041 71008455 -131319892 + L1MCb LINE L1 39 449 -5596 1083 276 42 28 chr4 71008656 71009101 -131319246 + L1MCb LINE L1 570 1006 -5039 735 178 74 30 chr4 71009098 71009328 -131319019 + L1MCb LINE L1 1259 1498 -5066 * 235 265 24 0 chr4 71009343 71009426 -131318921 + A-rich Low_complexity Low_complexity 5 89 0 418 217 69 29 chr4 71009438 71009613 -131318734 + L1MCb LINE L1 1539 1720 -4844 2043 113 13 29 chr4 71009833 71010144 -131318203 - AluSg SINE Alu -4 306 1 27 29 0 0 chr4 71010144 71010178 -131318169 + AT_rich Low_complexity Low_complexity 1 34 0 384 296 85 58 chr4 71010325 71010514 -131317833 - MIR SINE MIR -41 221 28 184 322 203 23 chr4 71011926 71012103 -131316244 - MIR SINE MIR -1 261 53 424 211 49 8 chr4 71012616 71012739 -131315608 - LTR37A LTR ERV1 -2 424 297 441 158 0 0 chr4 71013947 71014029 -131314318 + (TA)n Simple_repeat Simple_repeat 1 82 0 435 277 0 0 chr4 71014033 71014127 -131314220 + MER82 DNA MER2_type 1 94 -559 337 335 32 32 chr4 71014174 71014362 -131313985 - MIR SINE MIR -66 196 9 695 278 30 5 chr4 71014398 71014596 -131313751 + MER82 DNA MER2_type 444 646 -7 27 0 0 0 chr4 71014881 71014908 -131313439 + AT_rich Low_complexity Low_complexity 1 27 0 8938 27 7 0 chr4 71014939 71016785 -131311562 - L1PA3 LINE L1 0 6155 4302 5418 54 0 0 chr4 71016785 71017469 -131310878 - L1P LINE L1 -5459 687 4 2061 120 0 0 chr4 71017505 71017797 -131310550 - AluSg SINE Alu -18 292 1 1881 115 35 3 chr4 71018314 71018600 -131309747 + AluSc SINE Alu 1 295 -14 1395 333 56 44 chr4 71019161 71019589 -131308758 - HERVL LTR ERVL -2050 3604 3182 2190 112 0 3 chr4 71019589 71019894 -131308453 - AluSx SINE Alu -8 304 1 1395 333 56 44 chr4 71019894 71020252 -131308095 - HERVL LTR ERVL -2472 3182 2799 2054 51 0 102 chr4 71020252 71020603 -131307744 - AluY SINE Alu 0 319 1 1395 333 56 44 chr4 71020603 71020873 -131307474 - HERVL LTR ERVL -2855 2799 2534 809 258 151 4 chr4 71020930 71021201 -131307146 - MLT-int LTR MaLR -942 793 483 22 0 0 0 chr4 71021255 71021277 -131307070 + AT_rich Low_complexity Low_complexity 1 22 0 309 261 176 7 chr4 71021448 71021544 -131306803 - L1MEc LINE L1 -1395 4820 4742 1942 138 0 29 chr4 71021544 71021855 -131306492 - AluSx SINE Alu -10 302 1 309 261 176 7 chr4 71021855 71021900 -131306447 - L1MEc LINE L1 -1473 4742 4655 1141 280 131 48 chr4 71021929 71022465 -131305882 + MLT1E LTR MaLR 12 591 -2 1474 170 17 0 chr4 71022665 71022953 -131305394 - L1MA7 LINE L1 -3 6288 5996 1202 288 107 19 chr4 71023079 71023905 -131304442 - L1MEc LINE L1 -1825 4390 3493 1752 195 67 6 chr4 71023905 71024249 -131304098 - MER45B DNA AcHobo -675 365 1 849 279 97 12 chr4 71024249 71024662 -131303685 + L1ME2 LINE L1 5707 6154 -10 22 35 0 0 chr4 71024726 71024755 -131303592 + AT_rich Low_complexity Low_complexity 1 29 0 786 299 51 22 chr4 71024773 71025187 -131303160 - L1MEc LINE L1 -3041 3174 2749 3944 229 74 12 chr4 71025275 71026408 -131301939 - Charlie1 DNA MER1_type -28 2733 1531 308 224 17 0 chr4 71026440 71026498 -131301849 - Charlie1 DNA MER1_type -2702 59 1 279 0 0 0 chr4 71026583 71026614 -131301733 + (TG)n Simple_repeat Simple_repeat 1 31 0 991 143 34 6 chr4 71026616 71026791 -131301556 - L1PA13 LINE L1 -5 6158 5979 4926 179 11 10 chr4 71026797 71027721 -131300626 + L1PA12 LINE L1 1817 2741 -3405 9116 159 19 3 chr4 71027722 71030000 -131298347 + L1PA12 LINE L1 3677 6125 -43 339 289 65 7 chr4 71029973 71030154 -131298193 - L1MEc LINE L1 -3794 2421 2269 * 26 30 0 0 chr4 71030240 71030273 -131298074 + AT_rich Low_complexity Low_complexity 1 33 0 334 274 30 52 chr4 71030339 71030474 -131297873 + MER77 LTR ERV1 66 197 -408 490 325 87 40 chr4 71030518 71031064 -131297283 + MER77 LTR ERV1 155 699 -8 23 54 0 0 chr4 71031098 71031135 -131297212 + AT_rich Low_complexity Low_complexity 1 37 0 370 268 79 37 chr4 71031639 71031993 -131296354 + L1M4 LINE L1 2260 2628 -3518 217 153 17 34 chr4 71032001 71032060 -131296287 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 455 305 87 83 chr4 71032071 71032283 -131296064 + L1M4 LINE L1 2879 3089 -3057 1992 128 54 17 chr4 71032283 71032634 -131295713 - THE1B LTR MaLR 0 364 1 10430 94 47 3 chr4 71032634 71034147 -131294200 - THE1B-int LTR MaLR 0 1580 1 2038 121 63 23 chr4 71034147 71034495 -131293852 - THE1B LTR MaLR 0 364 3 455 305 87 83 chr4 71034495 71035175 -131293172 + L1M4 LINE L1 3088 3777 -2369 301 233 24 97 chr4 71035210 71035347 -131293000 + L1ME3A LINE L1 5601 5729 -433 318 305 40 50 chr4 71035416 71035616 -131292731 + L1ME3A LINE L1 5754 5951 -219 22 0 0 0 chr4 71036342 71036364 -131291983 + AT_rich Low_complexity Low_complexity 1 22 0 1912 131 26 9 chr4 71036645 71037036 -131291311 + LTR7 LTR ERV1 1 450 0 1404 91 0 48 chr4 71037425 71037673 -131290674 + AluY SINE Alu 82 319 0 317 314 59 64 chr4 71037845 71038065 -131290282 - L1ME LINE L1 -543 5578 5360 25 51 0 0 chr4 71038113 71038152 -131290195 + AT_rich Low_complexity Low_complexity 1 39 0 2035 118 3 7 chr4 71038632 71038999 -131289348 - AluSx SINE Alu 0 312 1 270 271 86 0 chr4 71039007 71039147 -131289200 - L1ME LINE L1 -1446 4700 4549 181 269 105 70 chr4 71039195 71039366 -131288981 - L2 LINE L2 -1 3312 3136 532 281 172 59 chr4 71041363 71041787 -131286560 - L2 LINE L2 -5 3308 2837 333 366 38 27 chr4 71041999 71042182 -131286165 - L2 LINE L2 -595 2719 2535 4534 188 40 3 chr4 71042205 71043156 -131285191 - L1MA8 LINE L1 -2 6289 5304 663 226 0 0 chr4 71043162 71043286 -131285061 - AluJb SINE Alu -188 124 1 1874 204 70 2 chr4 71043292 71043734 -131284613 - L1MA8 LINE L1 -825 5321 4850 1086 205 43 13 chr4 71043735 71043969 -131284378 + AluJo SINE Alu 60 300 -12 8672 188 33 16 chr4 71043969 71044263 -131284084 - L1MA8 LINE L1 -1291 4855 4568 1915 201 36 5 chr4 71044263 71044647 -131283700 - MSTD LTR MaLR 0 396 1 8672 188 33 16 chr4 71044647 71046293 -131282054 - L1MA8 LINE L1 -1578 4568 2881 2188 89 3 0 chr4 71046945 71047257 -131281090 - AluSp SINE Alu 0 313 1 365 324 26 23 chr4 71047398 71047707 -131280640 - L1M4 LINE L1 -1372 4774 4465 1398 214 17 50 chr4 71047713 71048072 -131280275 + MLT1A1 LTR MaLR 7 353 -12 23 78 0 0 chr4 71048076 71048127 -131280220 + AT_rich Low_complexity Low_complexity 1 51 0 738 292 46 50 chr4 71048303 71048563 -131279784 + MIR SINE MIR 3 261 -1 212 332 130 24 chr4 71048576 71048784 -131279563 + L2 LINE L2 2424 2653 -661 25 51 0 0 chr4 71049241 71049280 -131279067 + AT_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr4 71049884 71049904 -131278443 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 930 158 23 23 chr4 71052284 71052455 -131275892 + AluJo SINE Alu 1 171 -141 1958 117 7 11 chr4 71053108 71053444 -131274903 - AluSx SINE Alu 0 335 1 27 29 0 0 chr4 71053711 71053745 -131274602 + AT_rich Low_complexity Low_complexity 1 34 0 1686 170 3 7 chr4 71053747 71054035 -131274312 - AluJb SINE Alu -25 287 1 727 189 0 0 chr4 71054038 71054165 -131274182 - AluJo/FLAM SINE Alu -175 127 1 231 304 67 44 chr4 71054629 71054764 -131273583 + LTR33 LTR ERVL 59 196 -325 282 345 71 10 chr4 71054852 71055049 -131273298 + LTR33 LTR ERVL 307 515 -6 286 143 31 31 chr4 71055237 71055335 -131273012 + GA-rich Low_complexity Low_complexity 3 100 0 3040 271 69 32 chr4 71055343 71055674 -131272673 + L1MEc LINE L1 121 438 -5777 351 0 0 0 chr4 71055674 71055713 -131272634 + (TG)n Simple_repeat Simple_repeat 1 39 0 3040 271 69 32 chr4 71055713 71056841 -131271506 + L1MEc LINE L1 438 1600 -4615 849 181 58 0 chr4 71057120 71057291 -131271056 + L1PA15 LINE L1 5171 5351 -795 488 130 0 0 chr4 71057438 71057515 -131270832 - AluSp/q SINE Alu -10 303 227 1053 61 0 0 chr4 71057554 71057686 -131270661 - L1PA6 LINE L1 -11 6143 6012 5143 124 23 17 chr4 71057691 71057849 -131270498 + L1PA15 LINE L1 5336 5492 -673 2292 90 3 3 chr4 71057849 71058149 -131270198 + AluSq SINE Alu 7 306 -7 5143 124 23 17 chr4 71058149 71058810 -131269537 + L1PA15 LINE L1 5492 6160 -5 495 263 112 44 chr4 71059399 71059604 -131268743 + MIR SINE MIR 40 258 -4 23 54 0 0 chr4 71060697 71060734 -131267613 + AT_rich Low_complexity Low_complexity 1 37 0 2249 93 0 0 chr4 71061319 71061610 -131266737 + AluSg1 SINE Alu 1 291 -18 778 235 113 66 chr4 71061945 71062264 -131266083 + LTR16C LTR ERVL 148 481 -10 325 318 48 0 chr4 71063556 71063682 -131264665 - MIR SINE MIR -17 245 114 265 345 27 0 chr4 71063748 71063858 -131264489 + MIR SINE MIR 51 163 -99 31 26 0 0 chr4 71064346 71064384 -131263963 + AT_rich Low_complexity Low_complexity 1 38 0 1725 150 13 33 chr4 71064532 71064838 -131263509 + MLT2D LTR ERVL 2 301 -113 3648 145 28 68 chr4 71067476 71067630 -131260717 + LTR62 LTR ERVK 1 160 -559 2134 83 0 58 chr4 71067630 71067987 -131260360 + AluY SINE Alu 4 342 0 3648 145 28 68 chr4 71067987 71068575 -131259772 + LTR62 LTR ERVK 160 714 -5 2073 136 0 7 chr4 71069561 71069870 -131258477 + AluSq SINE Alu 1 307 -6 21 57 0 0 chr4 71070794 71070829 -131257518 + AT_rich Low_complexity Low_complexity 1 35 0 342 181 42 0 chr4 71071026 71071098 -131257249 - MER5A DNA MER1_type -77 112 38 295 254 56 0 chr4 71072876 71072947 -131255400 + MIR SINE MIR 120 194 -68 279 290 69 53 chr4 71073183 71073314 -131255033 + MIR SINE MIR 123 255 -7 364 271 39 39 chr4 71073443 71073572 -131254775 + MIR SINE MIR 24 152 -56 4753 27 0 0 chr4 71073760 71074316 -131254031 + L1PA5 LINE L1 5598 6153 -1 853 182 77 0 chr4 71074566 71074736 -131253611 + MER5A DNA MER1_type 1 183 -6 334 212 68 51 chr4 71074867 71074985 -131253362 + L1MC4 LINE L1 6601 6720 -1322 * 353 279 8 39 chr4 71074896 71075025 -131253322 - L1MC4 LINE L1 -1323 6719 6595 599 295 12 6 chr4 71077089 71077255 -131251092 + MER5B DNA MER1_type 4 170 -8 1999 91 0 54 chr4 71077646 71077942 -131250405 - AluSg SINE Alu -30 280 1 405 345 60 11 chr4 71077954 71078235 -131250112 - L1ME3A LINE L1 -274 5896 5602 196 306 18 27 chr4 71078308 71078419 -131249928 - MIR SINE MIR -1 261 152 412 320 85 35 chr4 71078454 71078654 -131249693 - MIR SINE MIR -34 228 19 2110 128 3 0 chr4 71079138 71079444 -131248903 - AluSx SINE Alu -5 307 1 1686 241 42 37 chr4 71079576 71080058 -131248289 + MLT1D LTR MaLR 1 484 -21 27334 101 5 4 chr4 71080175 71085269 -131243078 - L1PA7 LINE L1 0 6154 1060 450 110 0 14 chr4 71085370 71085443 -131242904 + L1PA6 LINE L1 5827 5898 -256 1834 196 117 5 chr4 71085507 71085926 -131242421 + MER31B LTR ERV1 1 466 0 186 214 24 0 chr4 71087157 71087199 -131241148 + L2 LINE L2 3214 3256 -16 915 121 0 0 chr4 71087296 71087428 -131240919 - AluSc SINE Alu -7 302 171 2517 69 6 6 chr4 71087528 71087863 -131240484 + L1PA6 LINE L1 5820 6154 0 182 306 42 14 chr4 71088294 71088366 -131239981 - MIR SINE MIR -23 239 166 288 364 57 14 chr4 71088425 71088565 -131239782 - MIR SINE MIR -111 151 6 262 219 162 9 chr4 71091843 71091948 -131236399 - MLT1L LTR MaLR 0 615 495 29730 47 34 2 chr4 71092323 71096305 -131232042 - L1P LINE L1 -2036 4110 5 40 37 0 0 chr4 71096509 71096563 -131231784 + AT_rich Low_complexity Low_complexity 1 54 0 2160 27 0 0 chr4 71096684 71096940 -131231407 - L1PA4 LINE L1 -2 6153 5898 16685 37 1 0 chr4 71096940 71099264 -131229083 + L1P2 LINE L1 3279 5604 -551 306 309 93 29 chr4 71099478 71099617 -131228730 + HAL1 LINE L1 1625 1772 -735 1160 259 47 39 chr4 71099624 71100010 -131228337 - MLT1B LTR MaLR -1 389 1 21 0 0 0 chr4 71100172 71100193 -131228154 + AT_rich Low_complexity Low_complexity 1 21 0 203 167 48 0 chr4 71100222 71100264 -131228083 + A-rich Low_complexity Low_complexity 5 48 0 229 188 58 14 chr4 71100706 71100775 -131227572 + HAL1b LINE L1 1048 1119 -229 * 263 280 68 8 chr4 71100770 71100888 -131227459 + L1ME4a LINE L1 5991 6115 -6 784 302 36 4 chr4 71101315 71101563 -131226784 - MIR SINE MIR 0 262 7 2616 125 45 2 chr4 71101963 71102411 -131225936 + L1MA5A LINE L1 5828 6294 -3 678 207 17 0 chr4 71102443 71102589 -131225758 + FLAM_A SINE Alu 1 148 0 3181 157 17 12 chr4 71102596 71102632 -131225715 + L1PA13 LINE L1 4707 4741 -1427 2538 101 10 41 chr4 71102632 71103019 -131225328 + THE1C LTR MaLR 1 375 0 3181 157 17 12 chr4 71103019 71104057 -131224290 + L1PA13 LINE L1 4741 5782 -386 2238 114 3 0 chr4 71104057 71104431 -131223916 + AluSc SINE Alu 1 375 0 2482 129 2 2 chr4 71104431 71104825 -131223522 + L1PA13 LINE L1 5769 6162 -1 450 315 69 31 chr4 71105397 71105772 -131222575 - L1ME LINE L1 -608 5558 5162 4667 162 13 28 chr4 71105773 71106790 -131221557 - L1PB4 LINE L1 -2 6154 5150 507 215 87 6 chr4 71106796 71106994 -131221353 + L1M4 LINE L1 4923 5133 -1013 180 182 0 0 chr4 71107850 71107894 -131220453 + (TG)n Simple_repeat Simple_repeat 1 44 0 341 301 48 0 chr4 71108589 71108672 -131219675 + L2 LINE L2 3134 3220 -52 2385 59 0 30 chr4 71110200 71110503 -131217844 - AluY SINE Alu -15 296 3 274 312 80 16 chr4 71112556 71112681 -131215666 - MIR SINE MIR -45 217 85 8030 68 0 0 chr4 71113497 71114591 -131213756 + L1P LINE L1 4084 5177 -969 590 86 0 0 chr4 71114706 71114787 -131213560 - THE1C LTR MaLR -32 343 263 442 317 84 28 chr4 71115190 71115474 -131212873 - L2 LINE L2 -1 3312 3013 1253 221 36 34 chr4 71115482 71115840 -131212507 - MLT1A2 LTR MaLR -13 361 3 2668 314 97 27 chr4 71115842 71116659 -131211688 - L2 LINE L2 -296 3017 2259 1637 158 68 46 chr4 71116659 71117026 -131211321 - THE1C LTR MaLR 0 375 1 2668 314 97 27 chr4 71117026 71117703 -131210644 - L2 LINE L2 -1054 2259 1417 2720 135 83 43 chr4 71118169 71118746 -131209601 - LTR18B LTR ERVL -14 600 1 1463 137 64 73 chr4 71118954 71119296 -131209051 - LTR18B LTR ERVL -7 607 269 3742 141 35 67 chr4 71119318 71120591 -131207756 + pTR5 LTR ERV1 743 2295 -143 1272 158 164 46 chr4 71120610 71120914 -131207433 - LTR18B LTR ERVL -274 340 1 958 301 46 17 chr4 71121177 71121593 -131206754 - LTR16A LTR ERVL -5 445 18 266 284 0 0 chr4 71122060 71122127 -131206220 + (TAG)n Simple_repeat Simple_repeat 2 68 0 3295 97 18 0 chr4 71122373 71122818 -131205529 + MLT2A2 LTR ERVL 1 453 0 286 330 0 0 chr4 71122877 71122977 -131205370 - Charlie8 DNA MER1_type -2192 225 126 21 0 0 0 chr4 71123015 71123036 -131205311 + AT_rich Low_complexity Low_complexity 1 21 0 407 264 26 84 chr4 71124376 71124531 -131203816 + MIR SINE MIR 58 203 -59 676 221 42 0 chr4 71125600 71125790 -131202557 + Charlie5 DNA MER1_type 3 200 -2412 * 876 201 52 19 chr4 71125783 71126052 -131202295 + Charlie5 DNA MER1_type 2347 2624 0 397 328 26 9 chr4 71126136 71126252 -131202095 - MIR SINE MIR -119 143 26 191 299 39 110 chr4 71127828 71127982 -131200365 + L2 LINE L2 264 406 -2908 812 308 95 48 chr4 71129417 71130048 -131198299 + L2 LINE L2 2401 3059 -254 315 239 0 15 chr4 71130119 71130186 -131198161 + L2 LINE L2 3236 3301 -12 300 289 36 0 chr4 71130183 71130266 -131198081 + MIR3 SINE MIR 100 185 -23 * 190 267 99 69 chr4 71131695 71131796 -131196551 + L2 LINE L2 3151 3254 -18 5246 198 47 10 chr4 71132615 71134369 -131193978 + L1MC1 LINE L1 4504 6320 -13 1323 168 93 31 chr4 71134553 71134844 -131193503 + L1ME1 LINE L1 5407 5715 -451 1341 284 96 44 chr4 71134884 71135242 -131193105 - MER21B LTR ERV1 -157 706 368 1930 87 4 4 chr4 71135242 71135496 -131192851 - AluSg SINE Alu -16 294 41 1341 284 96 44 chr4 71135496 71135793 -131192554 - MER21B LTR ERV1 -495 368 17 1065 219 72 33 chr4 71135854 71136187 -131192160 + L1ME1 LINE L1 5811 6156 -10 1491 102 5 5 chr4 71137546 71137751 -131190596 + AluSc SINE Alu 1 205 -104 9178 26 1 0 chr4 71137851 71139706 -131188641 + L1PA2 LINE L1 4296 6151 -4 573 318 25 13 chr4 71140678 71141195 -131187152 - L1M4 LINE L1 -686 5488 4966 201 226 0 0 chr4 71141268 71141321 -131187026 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 249 313 92 0 chr4 71141470 71141601 -131186746 - L1M4 LINE L1 -1493 4653 4511 247 277 51 0 chr4 71141641 71141768 -131186579 - L1M4 LINE L1 -1751 4395 4258 711 260 83 5 chr4 71141830 71142034 -131186313 + MIR SINE MIR 12 231 -31 339 352 15 15 chr4 71142036 71142232 -131186115 - L1M4 LINE L1 -1999 4147 3952 462 251 73 21 chr4 71142242 71142433 -131185914 + LTR68 LTR ERV1 9 209 -531 231 209 67 75 chr4 71142468 71142602 -131185745 + MER67C LTR ERV1 72 204 -506 323 311 74 42 chr4 71142872 71143155 -131185192 - L1M4 LINE L1 -2194 3952 3661 21 57 0 0 chr4 71143322 71143357 -131184990 + AT_rich Low_complexity Low_complexity 1 35 0 617 298 47 47 chr4 71143528 71143739 -131184608 - L1M4 LINE L1 -2882 3264 3051 2297 98 0 0 chr4 71143739 71144034 -131184313 - AluSg SINE Alu -15 295 1 617 298 47 47 chr4 71144034 71144184 -131184163 - L1M4 LINE L1 -3094 3052 2903 180 263 88 0 chr4 71144586 71144643 -131183704 + MIR3 SINE MIR 111 172 -36 712 354 145 48 chr4 71145697 71146075 -131182272 - L3 LINE CR1 -23 1554 1214 2300 96 7 0 chr4 71146075 71146377 -131181970 - AluSp SINE Alu -9 304 1 712 354 145 48 chr4 71146377 71147188 -131181159 - L3 LINE CR1 -363 1214 249 197 130 283 22 chr4 71147311 71147357 -131180990 + L2 LINE L2 3252 3309 -4 1693 248 101 19 chr4 71147428 71147903 -131180444 + MLT1E LTR MaLR 3 516 -77 225 0 0 0 chr4 71147974 71147999 -131180348 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 25 31 0 0 chr4 71148043 71148075 -131180272 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr4 71149132 71149163 -131179184 + AT_rich Low_complexity Low_complexity 1 31 0 381 375 60 0 chr4 71150254 71150438 -131177909 - MIR SINE MIR -15 247 53 314 170 0 0 chr4 71150579 71150626 -131177721 - L2 LINE L2 -7 3265 3219 388 191 9 9 chr4 71151336 71151446 -131176901 + GA-rich Low_complexity Low_complexity 3 112 0 1805 158 38 0 chr4 71151837 71152129 -131176218 + AluSx SINE Alu 3 305 -7 21 0 0 0 chr4 71152487 71152508 -131175839 + AT_rich Low_complexity Low_complexity 1 21 0 30 59 0 0 chr4 71152914 71152965 -131175382 + AT_rich Low_complexity Low_complexity 1 51 0 2056 131 0 3 chr4 71153201 71153491 -131174856 - AluSg SINE Alu -21 289 1 180 262 99 99 chr4 71154694 71154835 -131173512 + L3b LINE CR1 1405 1545 -38 233 354 10 0 chr4 71155074 71155170 -131173177 + MIR3 SINE MIR 102 198 -10 537 329 47 0 chr4 71155615 71155785 -131172562 + MIR SINE MIR 6 183 -79 474 267 69 8 chr4 71156650 71156781 -131171566 + L2 LINE L2 35 173 -3141 3152 272 168 40 chr4 71156783 71158346 -131170001 + L2 LINE L2 1382 3164 -149 2397 84 0 0 chr4 71158346 71158644 -131169703 - AluY SINE Alu -13 298 1 3152 272 168 40 chr4 71158644 71158759 -131169588 + L2 LINE L2 3164 3263 -50 538 221 17 93 chr4 71158837 71159009 -131169338 - MIR SINE MIR 0 262 104 1070 225 150 54 chr4 71159009 71159452 -131168895 + MER39 LTR ERV1 1 666 -41 233 246 107 66 chr4 71159524 71159646 -131168701 + MIR SINE MIR 101 227 -35 1953 141 7 3 chr4 71162002 71162292 -131166055 - AluSx SINE Alu -21 291 1 303 93 0 0 chr4 71162512 71162555 -131165792 + (CA)n Simple_repeat Simple_repeat 2 44 0 225 311 33 0 chr4 71162813 71162874 -131165473 + MER91 DNA MER1_type 127 189 -1 511 268 68 50 chr4 71163104 71163154 -131165193 + MIR SINE MIR 39 87 -175 1582 154 70 57 chr4 71163154 71163225 -131165122 - THE1C LTR MaLR 0 375 306 2243 94 13 7 chr4 71163225 71163534 -131164813 + AluSq SINE Alu 1 311 -2 1582 154 70 57 chr4 71163534 71163832 -131164515 - THE1C LTR MaLR -69 306 1 511 268 68 50 chr4 71163832 71164001 -131164346 + MIR SINE MIR 87 262 0 450 0 0 0 chr4 71165163 71165213 -131163134 + (TG)n Simple_repeat Simple_repeat 1 50 0 189 317 33 0 chr4 71165318 71165378 -131162969 + L2 LINE L2 3239 3300 -13 2178 164 5 16 chr4 71166488 71166865 -131161482 + THE1C LTR MaLR 3 375 0 9897 124 9 47 chr4 71166865 71168507 -131159840 + THE1C-int LTR MaLR 1 1580 0 2317 133 11 13 chr4 71168507 71168883 -131159464 + THE1C LTR MaLR 1 375 0 477 96 48 0 chr4 71168993 71169076 -131159271 + L1MA5 LINE L1 6208 6294 -6 349 263 12 0 chr4 71169765 71169845 -131158502 + MLT1I LTR MaLR 329 409 0 240 371 137 25 chr4 71170037 71170768 -131157579 + L2 LINE L2 677 1489 -1825 481 355 83 34 chr4 71170901 71171372 -131156975 + L2 LINE L2 1858 2351 -963 1176 265 56 9 chr4 71171396 71171823 -131156524 + HAL1 LINE L1 1755 2201 -306 301 296 28 84 chr4 71171874 71172053 -131156294 + HAL1 LINE L1 2333 2501 -6 21 36 0 0 chr4 71172057 71172085 -131156262 + AT_rich Low_complexity Low_complexity 1 28 0 857 152 38 11 chr4 71172501 71172685 -131155662 - MER53 DNA DNA 0 189 1 732 187 8 15 chr4 71172785 71172919 -131155428 + AluJ SINE Alu 1 133 -169 191 200 0 18 chr4 71172932 71172987 -131155360 + GA-rich Low_complexity Low_complexity 3 56 0 * 543 160 11 46 chr4 71172982 71173157 -131155190 + G-rich Low_complexity Low_complexity 5 173 0 1018 172 0 0 chr4 71173157 71173326 -131155021 + AluJ SINE Alu 130 298 -14 25 31 0 0 chr4 71173417 71173449 -131154898 + AT_rich Low_complexity Low_complexity 1 32 0 3480 201 67 22 chr4 71173807 71175287 -131153060 - L1MB7 LINE L1 -2 6993 5450 1335 254 82 30 chr4 71175292 71175721 -131152626 - L1MB7 LINE L1 -6381 478 28 1936 141 10 10 chr4 71177555 71177853 -131150494 - AluSx SINE Alu -14 298 1 209 233 0 0 chr4 71177925 71177968 -131150379 + L2 LINE L2 2472 2514 -800 22 56 0 0 chr4 71228084 71228120 -131100227 + AT_rich Low_complexity Low_complexity 1 36 0 210 37 0 0 chr4 71228320 71228347 -131100000 + (TC)n Simple_repeat Simple_repeat 2 28 0 1520 162 64 93 chr4 71229190 71229390 -131098957 + MLT1A1 LTR MaLR 1 186 -179 7501 28 2 1 chr4 71229390 71230288 -131098059 + L1PA4 LINE L1 5254 6152 -3 1520 162 64 93 chr4 71230288 71230463 -131097884 + MLT1A1 LTR MaLR 186 365 0 1098 167 12 61 chr4 71230628 71230873 -131097474 + THE1C LTR MaLR 143 375 0 667 276 45 27 chr4 71231289 71231510 -131096837 - MIR SINE MIR 0 262 38 277 304 109 14 chr4 71232235 71232373 -131095974 - MER117 DNA MER1_type -5 192 42 183 156 0 0 chr4 71232615 71232647 -131095700 + A-rich Low_complexity Low_complexity 1 32 0 217 167 63 6 chr4 71232668 71232726 -131095621 - MER5B DNA MER1_type -16 167 113 234 0 0 0 chr4 71234339 71234365 -131093982 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 344 254 60 121 chr4 71234381 71234629 -131093718 + MLT1K LTR MaLR 352 584 -4 694 293 89 13 chr4 71234630 71235041 -131093306 - MLT1L LTR MaLR -1 614 151 2073 122 14 3 chr4 71236221 71236509 -131091838 - AluSx SINE Alu -21 291 1 6121 67 3 0 chr4 71237071 71237805 -131090542 - L1PA7 LINE L1 0 6154 5419 1878 167 7 3 chr4 71238064 71238369 -131089978 - AluJb SINE Alu -6 306 1 3035 158 24 20 chr4 71238543 71238997 -131089350 + MLT2B2 LTR ERVL 3 454 -61 204 40 0 0 chr4 71238997 71239022 -131089325 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 3035 158 24 20 chr4 71239022 71239037 -131089310 + MLT2B2 LTR ERVL 454 467 -48 633 119 0 0 chr4 71239037 71239138 -131089209 + (TA)n Simple_repeat Simple_repeat 1 101 0 3035 158 24 20 chr4 71239138 71239173 -131089174 + MLT2B2 LTR ERVL 467 510 -5 1873 136 39 0 chr4 71239322 71239442 -131088905 + AluSg SINE Alu 1 115 -195 432 0 0 0 chr4 71239442 71239490 -131088857 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1873 136 39 0 chr4 71239490 71239648 -131088699 + AluSg SINE Alu 115 290 -20 508 250 144 16 chr4 71240687 71240875 -131087472 + L2 LINE L2 3052 3263 -50 3571 135 27 20 chr4 71241002 71241282 -131087065 + L1MC1 LINE L1 5584 5861 -472 2090 145 0 0 chr4 71241282 71241579 -131086768 - AluSx SINE Alu -15 297 1 3571 135 27 20 chr4 71241579 71241884 -131086463 + L1MC1 LINE L1 5861 6173 -160 2670 113 8 21 chr4 71241884 71242264 -131086083 + THE1C LTR MaLR 1 375 0 9786 107 86 3 chr4 71242264 71243722 -131084625 + THE1C-int LTR MaLR 1 1580 0 2988 78 16 3 chr4 71243722 71244092 -131084255 + THE1C LTR MaLR 1 375 0 1022 150 0 0 chr4 71244093 71244240 -131084107 + L1MC1 LINE L1 6170 6316 -17 1854 152 124 44 chr4 71244417 71244805 -131083542 + MSTA LTR MaLR 3 421 -7 206 316 0 70 chr4 71245123 71245237 -131083110 + MIR3 SINE MIR 99 204 -4 1517 157 128 26 chr4 71246208 71246520 -131081827 + MER7A DNA MER2_type 2 343 -3 541 311 185 9 chr4 71247541 71247763 -131080584 + MIR SINE MIR 2 262 0 731 275 66 20 chr4 71249222 71249466 -131078881 - MLT1J1 LTR MaLR 0 446 192 275 352 199 16 chr4 71250450 71250836 -131077511 - L3 LINE CR1 -219 1358 902 2112 171 23 21 chr4 71251022 71251409 -131076938 - MLT1B LTR MaLR -2 388 1 207 320 0 51 chr4 71251472 71251550 -131076797 + L2 LINE L2 3239 3312 -1 2181 231 81 15 chr4 71251823 71252419 -131075928 - LTR48B LTR ERV1 0 644 10 428 224 141 77 chr4 71252607 71252777 -131075570 - LTR48B-int LTR ERV1 -215 4721 4541 * 820 131 52 26 chr4 71252773 71252926 -131075421 - LTR48B-int LTR ERV1 -541 5790 5634 251 207 0 0 chr4 71252929 71252994 -131075353 + AluJo SINE Alu 84 125 -177 714 125 21 0 chr4 71252995 71253139 -131075208 + GA-rich Low_complexity Low_complexity 4 150 0 699 181 88 47 chr4 71253151 71253322 -131075025 + AluJo SINE Alu 131 308 -4 6517 151 93 71 chr4 71253334 71255879 -131072468 - LTR48B-int LTR ERV1 -692 6004 2948 3367 181 25 56 chr4 71255914 71256666 -131071681 - LTR48B-int LTR ERV1 -4231 2100 1372 506 203 47 23 chr4 71256760 71256888 -131071459 - LTR48B-int LTR ERV1 -4918 1413 1283 227 351 0 14 chr4 71256888 71256962 -131071385 - tRNA-Glu-GAG tRNA tRNA 0 75 3 3533 268 54 28 chr4 71256962 71257825 -131070522 - LTR48B-int LTR ERV1 -4465 1481 355 2010 171 47 17 chr4 71257857 71258274 -131070073 - LTR48B-int LTR ERV1 -4617 1329 1 2568 219 82 8 chr4 71258276 71258874 -131069473 - LTR48B LTR ERV1 0 644 3 189 0 0 0 chr4 71258968 71258989 -131069358 + (A)n Simple_repeat Simple_repeat 1 21 0 1200 155 15 168 chr4 71259499 71259911 -131068436 - LTR49 LTR ERV1 -246 349 1 13139 98 8 6 chr4 71260628 71262506 -131065841 - MER57-int LTR ERV1 -1921 517 17 5205 119 55 47 chr4 71262506 71263935 -131064412 - pTR5 LTR ERV1 0 2606 1524 * 6948 120 29 27 chr4 71263933 71264666 -131063681 - MER57-int LTR ERV1 -1471 4475 3737 1748 183 3 0 chr4 71264666 71264977 -131063370 - AluSx SINE Alu 0 312 1 6948 120 29 27 chr4 71264977 71265416 -131062931 - MER57-int LTR ERV1 -2209 3737 3300 3516 161 90 16 chr4 71265404 71266067 -131062280 - MER57-int LTR ERV1 -3900 3637 2925 4138 135 82 143 chr4 71266067 71267802 -131060545 - pTR5 LTR ERV1 0 2438 17 239 161 18 0 chr4 71267811 71267867 -131060480 + G-rich Low_complexity Low_complexity 5 61 0 3470 275 107 14 chr4 71267900 71269300 -131059047 + L2 LINE L2 1758 3286 -27 4261 155 26 6 chr4 71269314 71270017 -131058330 + MER50 LTR ERV1 1 717 -17 216 97 0 0 chr4 71270017 71270048 -131058299 + (GGAA)n Simple_repeat Simple_repeat 1 31 0 30412 115 13 12 chr4 71270911 71275450 -131052897 - L1P LINE L1 -1594 4552 11 6829 119 72 53 chr4 71275608 71277803 -131050544 - Harlequin LTR ERV1 0 8399 31 680 100 326 13 chr4 71277808 71278038 -131050309 - Harlequin LTR ERV1 -5755 1141 840 * 24408 83 1 7 chr4 71278005 71281181 -131047166 - Harlequin LTR ERV1 -3425 4974 1816 1269 217 45 31 chr4 71281283 71281642 -131046705 + Charlie1b DNA MER1_type 160 523 0 383 68 17 0 chr4 71281819 71281878 -131046469 + (TG)n Simple_repeat Simple_repeat 1 60 0 1100 202 30 22 chr4 71281918 71282185 -131046162 - MER45B DNA AcHobo 0 1040 772 238 319 32 0 chr4 71283137 71283231 -131045116 + HAL1b LINE L1 510 606 -742 402 220 10 0 chr4 71283798 71283898 -131044449 + MER110A LTR ERV1 70 170 -298 501 150 30 0 chr4 71283903 71284003 -131044344 - L1PA14 LINE L1 -128 6033 5931 912 109 0 0 chr4 71284003 71284139 -131044208 + L1PA13 LINE L1 6021 6158 -5 327 258 85 0 chr4 71284268 71284434 -131043913 + MER110A LTR ERV1 177 372 -96 307 365 0 14 chr4 71284608 71284756 -131043591 + L1M4 LINE L1 2405 2550 -3596 21 36 0 0 chr4 71284983 71285011 -131043336 + AT_rich Low_complexity Low_complexity 1 28 0 1443 197 131 8 chr4 71285334 71285685 -131042662 + MSTD LTR MaLR 1 394 -2 339 280 75 0 chr4 71285688 71285795 -131042552 - MIR SINE MIR -45 217 103 23 0 0 0 chr4 71285799 71285822 -131042525 + AT_rich Low_complexity Low_complexity 1 23 0 1558 209 43 14 chr4 71286051 71286396 -131041951 + MLT1A1 LTR MaLR 11 365 0 631 329 40 12 chr4 71289437 71289686 -131038661 + MIR SINE MIR 6 261 -1 203 186 0 23 chr4 71290809 71290852 -131037495 + (CATATA)n Simple_repeat Simple_repeat 4 45 0 490 278 31 5 chr4 71290853 71291044 -131037303 - ERVL LTR ERVL -382 5382 5187 13834 118 22 25 chr4 71291063 71291534 -131036813 - L1PA10 LINE L1 -11 6157 5686 2043 125 14 10 chr4 71291534 71291829 -131036518 - AluSx SINE Alu -16 296 1 13834 118 22 25 chr4 71291829 71294511 -131033836 - L1PA10 LINE L1 -482 5686 3014 2400 136 2 104 chr4 71294515 71295045 -131033302 + L1PA10 LINE L1 2523 2998 -3148 1186 173 115 103 chr4 71295150 71295643 -131032704 - MER66A LTR ERV1 0 478 97 416 281 50 14 chr4 71295733 71295872 -131032475 - ERVL LTR ERVL -702 5062 4919 508 326 65 49 chr4 71295964 71296108 -131032239 - ERVL LTR ERVL -2317 3447 3307 1827 204 7 32 chr4 71296108 71296515 -131031832 + MLT2C1 LTR ERVL 1 397 0 508 326 65 49 chr4 71296515 71296984 -131031363 - ERVL LTR ERVL -2457 3307 2824 549 213 262 30 chr4 71296990 71297253 -131031094 + MER5C DNA MER1_type 1 324 0 639 274 87 22 chr4 71297264 71297754 -131030593 - ERVL LTR ERVL -2885 2769 2228 439 319 55 44 chr4 71297979 71298343 -131030004 - ERVL LTR ERVL -3905 1859 1492 2009 150 27 55 chr4 71298405 71298806 -131029541 + MLT1B LTR MaLR 1 390 0 1213 224 46 56 chr4 71299221 71299614 -131028733 - MLT1B LTR MaLR -1 389 1 313 333 99 18 chr4 71299697 71300081 -131028266 - ERVL LTR ERVL -4586 1178 764 1428 233 82 14 chr4 71301444 71301881 -131026466 - MLT1C LTR MaLR 0 467 1 24 32 0 0 chr4 71302139 71302170 -131026177 + AT_rich Low_complexity Low_complexity 1 31 0 403 368 89 57 chr4 71302313 71302750 -131025597 - L2 LINE L2 -6 3266 2816 640 290 53 58 chr4 71302828 71303221 -131025126 + MLT1I LTR MaLR 19 409 0 244 361 31 15 chr4 71303240 71303370 -131024977 - L2 LINE L2 -576 2738 2607 878 235 34 81 chr4 71304824 71305295 -131023052 - MLT1A1 LTR MaLR 0 365 4 360 59 0 0 chr4 71305534 71305585 -131022762 + (TG)n Simple_repeat Simple_repeat 2 52 0 22 56 0 0 chr4 71306636 71306672 -131021675 + AT_rich Low_complexity Low_complexity 1 36 0 334 263 95 0 chr4 71306762 71306857 -131021490 - MIR SINE MIR -79 183 80 268 330 0 8 chr4 71306916 71307034 -131021313 + CT-rich Low_complexity Low_complexity 4 120 0 6712 68 8 0 chr4 71307044 71308580 -131019767 - L1PA6 LINE L1 -7 6147 4594 290 370 119 20 chr4 71309392 71309986 -131018361 - L2 LINE L2 -339 2975 2323 31 44 0 0 chr4 71310004 71310049 -131018298 + AT_rich Low_complexity Low_complexity 1 45 0 903 300 59 24 chr4 71310167 71310627 -131017720 - MLT1J LTR MaLR -35 476 1 21 36 0 0 chr4 71310903 71310931 -131017416 + AT_rich Low_complexity Low_complexity 1 28 0 930 223 100 57 chr4 71311811 71312161 -131016186 + MLT1A1 LTR MaLR 1 365 0 1864 231 39 7 chr4 71312808 71313272 -131015075 - MLT1D LTR MaLR -1 504 26 22989 31 2 0 chr4 71313379 71316930 -131011417 - L1PA4 LINE L1 -8 6147 2589 19489 64 3 5 chr4 71317029 71319650 -131008697 - L1PA4 LINE L1 -3528 2618 3 393 22 0 0 chr4 71319804 71319850 -131008497 + (TA)n Simple_repeat Simple_repeat 2 47 0 209 83 28 0 chr4 71319989 71320025 -131008322 + (TG)n Simple_repeat Simple_repeat 1 37 0 508 291 149 9 chr4 71320477 71320684 -131007663 + MIR SINE MIR 26 262 0 257 316 26 0 chr4 71321200 71321276 -131007071 + GA-rich Low_complexity Low_complexity 2 79 0 219 36 0 0 chr4 71321382 71321410 -131006937 + (CA)n Simple_repeat Simple_repeat 2 29 0 1977 91 39 49 chr4 71321748 71322055 -131006292 + AluY SINE Alu 1 304 -7 235 167 130 19 chr4 71322429 71322483 -131005864 - L2 LINE L2 0 3313 3254 823 169 23 0 chr4 71323219 71323349 -131004998 + AluSq/x SINE Alu 4 136 -177 2250 102 10 0 chr4 71323611 71323906 -131004441 - AluY SINE Alu -12 299 2 293 299 146 56 chr4 71324425 71324856 -131003491 + MLT1J LTR MaLR 1 470 -41 192 312 251 14 chr4 71325033 71325655 -131002692 + L2 LINE L2 1542 2310 -1004 5455 104 1 35 chr4 71325721 71326528 -131001819 + LTR17 LTR ERV1 1 780 0 694 240 45 11 chr4 71326653 71326832 -131001515 + MIR SINE MIR 77 261 -1 1692 135 11 23 chr4 71327038 71327304 -131001043 - AluSx SINE Alu -17 295 33 430 237 0 11 chr4 71328232 71328325 -131000022 + MIR SINE MIR 6 97 -165 8784 120 73 10 chr4 71328325 71329763 -130998584 + THE1C-int LTR MaLR 52 1580 0 1039 135 56 119 chr4 71329763 71330066 -130998281 + THE1C LTR MaLR 1 284 -91 212 152 22 43 chr4 71330251 71330297 -130998050 + CT-rich Low_complexity Low_complexity 3 47 0 3731 269 62 38 chr4 71330715 71331019 -130997328 - L2 LINE L2 -5 3308 3013 1474 203 31 3 chr4 71331019 71331344 -130997003 + MER58B DNA MER1_type 4 337 -4 3731 269 62 38 chr4 71331344 71332544 -130995803 - L2 LINE L2 -300 3013 1758 312 321 9 0 chr4 71332772 71332878 -130995469 + (TA)n Simple_repeat Simple_repeat 1 107 0 261 209 0 0 chr4 71332950 71333017 -130995330 + (TA)n Simple_repeat Simple_repeat 2 68 0 284 265 39 59 chr4 71333219 71333321 -130995026 - L2 LINE L2 -17 3296 3197 683 253 103 10 chr4 71333374 71333568 -130994779 + MER20 DNA MER1_type 8 219 0 562 210 17 45 chr4 71334839 71335015 -130993332 - MER39 LTR ERV1 -10 697 527 743 207 76 123 chr4 71335051 71335408 -130992939 - MER39-int LTR ERV1 -5239 1092 753 555 256 79 67 chr4 71335532 71335935 -130992412 - MER39-int LTR ERV1 -5883 448 41 1245 235 130 87 chr4 71335978 71336486 -130991861 - MER39 LTR ERV1 0 707 1 33 43 0 0 chr4 71336696 71336743 -130991604 + AT_rich Low_complexity Low_complexity 1 47 0 984 186 5 5 chr4 71336764 71336958 -130991389 + MER34C LTR ERV1 386 579 -6 362 297 31 0 chr4 71337014 71337142 -130991205 + MIR SINE MIR 121 252 -10 307 245 24 20 chr4 71337239 71337403 -130990944 + MER104 DNA Tc2 1 165 -15 2430 77 0 0 chr4 71338013 71338313 -130990034 - AluSg SINE Alu -10 300 1 2948 153 23 30 chr4 71338449 71338867 -130989480 - MER34B LTR ERV1 0 565 146 2115 123 43 103 chr4 71338867 71338934 -130989413 - MSTB2 LTR MaLR 0 457 388 2261 110 7 3 chr4 71338934 71339242 -130989105 + AluSx SINE Alu 1 309 -3 2115 123 43 103 chr4 71339242 71339255 -130989092 - MSTB2 LTR MaLR -69 388 376 744 94 0 0 chr4 71339255 71339361 -130988986 + (GGAA)n Simple_repeat Simple_repeat 4 109 0 2115 123 43 103 chr4 71339361 71339765 -130988582 - MSTB2 LTR MaLR -81 376 1 2948 153 23 30 chr4 71339765 71339914 -130988433 - MER34B LTR ERV1 -419 146 2 786 282 60 28 chr4 71340315 71340563 -130987784 + MIR SINE MIR 7 262 0 1398 333 81 16 chr4 71341100 71341480 -130986867 + MER115 DNA AcHobo 25 379 -314 2025 144 42 33 chr4 71341480 71341841 -130986506 - THE1B LTR MaLR 0 364 1 11855 93 6 1 chr4 71341841 71343414 -130984933 - THE1B-int LTR MaLR 0 1580 1 1847 159 36 44 chr4 71343414 71343779 -130984568 - THE1B LTR MaLR 0 364 3 1398 333 81 16 chr4 71343779 71344014 -130984333 + MER115 DNA AcHobo 378 682 -11 1739 201 35 30 chr4 71344071 71344465 -130983882 - MSTD LTR MaLR 0 396 1 228 274 16 0 chr4 71344504 71344566 -130983781 + L2 LINE L2 3184 3246 -67 935 235 93 24 chr4 71344568 71344857 -130983490 + MER58B DNA MER1_type 2 310 -31 203 323 31 0 chr4 71344882 71344947 -130983400 + L2 LINE L2 3234 3300 -13 186 103 0 0 chr4 71344947 71344976 -130983371 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 261 0 0 0 chr4 71345441 71345470 -130982877 + (TG)n Simple_repeat Simple_repeat 2 30 0 1364 249 74 7 chr4 71345492 71345909 -130982438 - MLT2B1 LTR ERVL -75 445 1 565 302 28 33 chr4 71346995 71347207 -130981140 + MIR SINE MIR 52 262 0 5119 225 40 11 chr4 71347443 71347953 -130980394 - L1M4b LINE L1 -767 6190 5696 2333 62 0 62 chr4 71347953 71348274 -130980073 + AluY SINE Alu 1 301 -10 5119 225 40 11 chr4 71348274 71348498 -130979849 - L1M4b LINE L1 -1261 5696 5480 216 0 0 0 chr4 71348498 71348522 -130979825 + (CAA)n Simple_repeat Simple_repeat 1 24 0 5119 225 40 11 chr4 71348522 71349251 -130979096 - L1M4b LINE L1 -1477 5480 4683 627 217 8 0 chr4 71349286 71349406 -130978941 + FLAM_A SINE Alu 1 121 -12 3289 205 50 33 chr4 71349437 71350217 -130978130 + MER21B LTR ERV1 13 805 -58 826 230 61 67 chr4 71350296 71350639 -130977708 - L1M4b LINE L1 -2282 4675 4335 * 841 245 49 92 chr4 71350636 71350912 -130977435 - L1M4b LINE L1 -3704 3265 2979 856 154 0 0 chr4 71350912 71351042 -130977305 + FLAM_C SINE Alu 2 131 -2 841 245 49 92 chr4 71351042 71351651 -130976696 - L1M4b LINE L1 -3990 2979 2476 2003 196 92 19 chr4 71351794 71351915 -130976432 - L1M4b LINE L1 -4833 2022 1911 255 79 0 0 chr4 71351915 71351953 -130976394 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2074 114 0 0 chr4 71351957 71352230 -130976117 - AluSg SINE Alu -37 273 1 2003 196 92 19 chr4 71352230 71352865 -130975482 - L1M4b LINE L1 -4946 1909 1206 2201 166 24 15 chr4 71353115 71353525 -130974822 - MLT2D LTR ERVL 0 414 1 1357 267 191 52 chr4 71353807 71354619 -130973728 - L1M4b LINE L1 -5924 935 11 353 313 35 28 chr4 71354638 71354782 -130973565 + L2 LINE L2 2909 3053 -219 427 246 177 31 chr4 71355781 71355911 -130972436 + L2 LINE L2 3165 3313 0 506 294 128 10 chr4 71356650 71356854 -130971493 + MIR SINE MIR 20 247 -15 322 366 16 0 chr4 71357119 71357242 -130971105 + L2 LINE L2 3188 3312 -1 977 275 45 43 chr4 71357253 71357489 -130970858 - MLT1J2 LTR MaLR 0 450 211 2131 134 0 28 chr4 71357489 71357810 -130970537 + AluSx SINE Alu 1 312 0 977 275 45 43 chr4 71357810 71358016 -130970331 - MLT1J2 LTR MaLR -239 211 7 367 261 23 39 chr4 71359490 71359620 -130968727 - MLT1K LTR MaLR -66 522 395 24 0 0 0 chr4 71359620 71359644 -130968703 + AT_rich Low_complexity Low_complexity 1 24 0 658 80 0 20 chr4 71359649 71359749 -130968598 - L1PA8 LINE L1 -4 6168 6071 768 230 6 22 chr4 71360052 71360230 -130968117 - MIR SINE MIR -4 258 84 1153 296 37 75 chr4 71360568 71361265 -130967082 + L2 LINE L2 2084 2754 -560 262 304 0 0 chr4 71361837 71361928 -130966419 + L1ME3A LINE L1 5516 5606 -558 1815 213 116 21 chr4 71362078 71362119 -130966228 - MLT2B1 LTR ERVL 0 520 484 498 17 0 0 chr4 71362119 71362178 -130966169 + (TG)n Simple_repeat Simple_repeat 2 60 0 1815 213 116 21 chr4 71362178 71362611 -130965736 - MLT2B1 LTR ERVL -36 484 1 272 233 35 12 chr4 71362772 71362858 -130965489 + MLT1I LTR MaLR 322 409 0 465 262 71 28 chr4 71362878 71363130 -130965217 + L1ME3A LINE L1 5683 5945 -225 214 200 0 0 chr4 71363215 71363255 -130965092 + (TAA)n Simple_repeat Simple_repeat 1 40 0 219 69 0 0 chr4 71363454 71363483 -130964864 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 451 328 61 8 chr4 71363766 71364013 -130964334 + L2 LINE L2 2148 2407 -907 303 375 42 35 chr4 71364379 71364523 -130963824 + L2 LINE L2 3128 3272 0 235 354 69 7 chr4 71365587 71365731 -130962616 - MIR SINE MIR -107 155 3 3923 242 32 20 chr4 71366621 71366646 -130961701 + L1MCb LINE L1 3 26 -6313 1858 148 43 38 chr4 71366646 71367019 -130961328 + THE1C LTR MaLR 1 375 0 3923 242 32 20 chr4 71367019 71368459 -130959888 + L1MCb LINE L1 26 1488 -4851 1202 159 24 48 chr4 71368498 71368749 -130959598 - MSTB1 LTR MaLR -176 256 12 727 180 68 6 chr4 71368753 71368914 -130959433 - MSTB1-int LTR MaLR 0 1651 1481 906 154 126 12 chr4 71368936 71369182 -130959165 + L1MCb LINE L1 1482 1755 -4809 960 235 41 43 chr4 71369243 71369669 -130958678 - L1ME1 LINE L1 -1 6165 5735 * 8362 178 27 25 chr4 71369666 71370874 -130957473 + L1PBb LINE L1 461 1666 -4537 5780 111 42 49 chr4 71370874 71373097 -130955250 + SVA Other Other 12 1386 0 8362 178 27 25 chr4 71373097 71374704 -130953643 + L1PBb LINE L1 1666 3270 -2933 2561 93 60 21 chr4 71374704 71375135 -130953212 - LTR7 LTR ERV1 -2 448 1 8362 178 27 25 chr4 71375135 71375927 -130952420 + L1PBb LINE L1 3270 4145 -2058 2329 72 0 0 chr4 71375927 71376220 -130952127 - AluY SINE Alu -17 294 2 8362 178 27 25 chr4 71376220 71376296 -130952051 + L1PBb LINE L1 4145 4219 -1984 186 133 0 0 chr4 71376313 71376343 -130952004 + (AGGGGG)n Simple_repeat Simple_repeat 5 34 0 190 111 89 0 chr4 71376700 71376745 -130951602 + GA-rich Low_complexity Low_complexity 3 51 0 454 250 14 0 chr4 71376745 71376885 -130951462 + L1 LINE L1 4208 4349 -1854 180 0 0 0 chr4 71377342 71377362 -130950985 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2916 35 0 0 chr4 71377362 71377708 -130950639 - L1PA4 LINE L1 -8 6147 5802 799 228 6 0 chr4 71377721 71377892 -130950455 + MIR SINE MIR 49 220 -42 2277 122 3 0 chr4 71378462 71378773 -130949574 + AluSp SINE Alu 1 312 -1 28 71 0 0 chr4 71378842 71378898 -130949449 + AT_rich Low_complexity Low_complexity 1 56 0 470 102 0 11 chr4 71378934 71379022 -130949325 + (TA)n Simple_repeat Simple_repeat 1 87 0 431 296 99 0 chr4 71379022 71379164 -130949183 - MIR SINE MIR -68 194 39 2132 172 3 24 chr4 71379248 71379621 -130948726 - MLT1A1 LTR MaLR 0 365 1 187 268 18 36 chr4 71379903 71379959 -130948388 - L2 LINE L2 -9 3263 3209 215 152 22 0 chr4 71380167 71380213 -130948134 + (TA)n Simple_repeat Simple_repeat 2 48 0 188 294 103 24 chr4 71380809 71380935 -130947412 - MIR SINE MIR 0 262 127 1131 230 125 25 chr4 71381012 71381451 -130946896 + MER34 LTR ERV1 60 542 0 230 240 20 0 chr4 71381543 71381593 -130946754 - L2 LINE L2 -18 3295 3245 1116 164 5 0 chr4 71381741 71381936 -130946411 - MER46A DNA MER2_type 0 236 41 563 223 86 53 chr4 71382000 71382421 -130945926 + LTR48B LTR ERV1 142 626 -18 229 245 0 0 chr4 71382990 71383039 -130945308 + GA-rich Low_complexity Low_complexity 4 52 0 198 264 230 23 chr4 71383290 71383377 -130944970 + L2 LINE L2 3168 3272 0 433 121 0 60 chr4 71385038 71385121 -130943226 + MADE1 DNA Mariner 1 78 -2 369 275 22 21 chr4 71385122 71385237 -130943110 + MIR SINE MIR 40 160 -60 514 208 141 26 chr4 71385352 71385544 -130942803 + MER39 LTR ERV1 295 508 -199 242 143 0 54 chr4 71386217 71386273 -130942074 + (TCTCTG)n Simple_repeat Simple_repeat 4 56 0 915 262 138 37 chr4 71386637 71387129 -130941218 + MER34 LTR ERV1 1 542 0 457 328 57 10 chr4 71387259 71387451 -130940896 + MIR SINE MIR 8 208 -54 1343 182 246 60 chr4 71388981 71389432 -130938915 - MLT1H LTR MaLR -2 547 13 1293 141 5 0 chr4 71389459 71392047 -130936300 - ALR/Alpha Satellite centromeric -1 2599 1 334 373 16 22 chr4 71392551 71392736 -130935611 + MIR3 SINE MIR 2 185 -23 198 0 0 0 chr4 71392737 71392759 -130935588 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 3213 102 0 15 chr4 71393349 71393818 -130934529 + L1PB1 LINE L1 5676 6137 -14 219 88 0 0 chr4 71393821 71393855 -130934492 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 270 232 88 48 chr4 71393916 71394041 -130934306 - L2 LINE L2 -185 3128 2999 1589 261 25 14 chr4 71394054 71394491 -130933856 - MER70B LTR ERVL -135 443 2 277 309 12 12 chr4 71394537 71394621 -130933726 - L2 LINE L2 -385 2928 2845 2193 65 3 62 chr4 71395449 71395771 -130932576 + AluY SINE Alu 1 303 -8 11749 113 9 41 chr4 71395990 71398867 -130929480 - L1P3 LINE L1 -3606 2855 8 943 148 0 0 chr4 71398875 71399010 -130929337 - AluJb SINE Alu -177 135 1 3228 200 56 10 chr4 71399010 71399810 -130928537 - Charlie1 DNA MER1_type -214 2547 1711 3496 191 32 48 chr4 71399814 71401343 -130927004 - L1MB8 LINE L1 0 6178 4664 1901 175 0 0 chr4 71401343 71401640 -130926707 - AluSx SINE Alu -15 297 1 3496 191 32 48 chr4 71401640 71401751 -130926596 - L1MB8 LINE L1 -1514 4664 4553 1826 229 38 22 chr4 71401752 71402195 -130926152 + MLT2B3 LTR ERVL 1 450 -104 1022 127 12 12 chr4 71402195 71402368 -130925979 + THE1C LTR MaLR 1 173 -202 1048 46 1 6 chr4 71402368 71402499 -130925848 - L1M4 LINE L1 -339 5816 5691 442 43 0 43 chr4 71402499 71402555 -130925792 + L1PA4 LINE L1 6087 6152 -3 1048 46 1 6 chr4 71402555 71402571 -130925776 - L1M4 LINE L1 -464 5691 5676 971 141 7 29 chr4 71402575 71402767 -130925580 + THE1C LTR MaLR 199 375 0 538 168 28 9 chr4 71402767 71402828 -130925519 + MLT2B3 LTR ERVL 446 511 -43 476 59 15 0 chr4 71402828 71402896 -130925451 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 538 168 28 9 chr4 71402896 71402941 -130925406 + MLT2B3 LTR ERVL 511 554 0 259 204 0 0 chr4 71402946 71402995 -130925352 - L1MB8 LINE L1 -1595 4551 4503 1776 242 20 4 chr4 71402995 71403482 -130924865 - L1MB8 LINE L1 -1605 4541 4047 448 178 37 98 chr4 71403756 71403836 -130924511 - Charlie1 DNA MER1_type -17 2744 2661 5784 48 0 1 chr4 71403836 71404543 -130923804 - L1PA5 LINE L1 -7 6147 5442 448 178 37 98 chr4 71404543 71404676 -130923671 - Charlie1 DNA MER1_type -100 2661 2544 1143 186 0 0 chr4 71404693 71404886 -130923461 - AluJb SINE Alu 0 312 120 21285 91 7 15 chr4 71404902 71407440 -130920907 - L1PA7 LINE L1 -3 6151 3668 2354 92 3 16 chr4 71407440 71407755 -130920592 - AluY SINE Alu 0 311 1 21285 91 7 15 chr4 71407755 71409386 -130918961 - L1PA7 LINE L1 -2486 3668 2025 33 56 0 0 chr4 71410188 71410242 -130918105 + AT_rich Low_complexity Low_complexity 1 54 0 190 331 81 70 chr4 71410313 71410401 -130917946 - MIR SINE MIR 0 262 177 2179 135 120 5 chr4 71410401 71410785 -130917562 + MSTA LTR MaLR 1 428 0 190 331 81 70 chr4 71410785 71410868 -130917479 - MIR SINE MIR -85 177 89 3638 170 28 25 chr4 71410985 71411734 -130916613 - L1MB4 LINE L1 -2 6178 5428 1854 179 70 42 chr4 71412788 71413191 -130915156 - MLT2D LTR ERVL 0 414 1 428 250 15 22 chr4 71413342 71413478 -130914869 + L1MEc LINE L1 37 171 -6225 637 206 15 0 chr4 71413664 71413795 -130914552 + L1MEc LINE L1 530 662 -5734 259 333 34 8 chr4 71413825 71413942 -130914405 + L2 LINE L2 3163 3282 -31 21 0 0 0 chr4 71414163 71414184 -130914163 + AT_rich Low_complexity Low_complexity 1 21 0 1742 43 0 51 chr4 71414375 71414610 -130913737 - AluY SINE Alu 0 311 89 190 288 12 25 chr4 71415411 71415491 -130912856 + L2 LINE L2 1131 1209 -2105 481 325 101 48 chr4 71415567 71415667 -130912680 + L2 LINE L2 2302 2395 -919 2330 71 6 22 chr4 71415667 71415978 -130912369 - AluY SINE Alu -5 306 1 481 325 101 48 chr4 71415978 71416255 -130912092 + L2 LINE L2 2395 2699 -615 665 161 57 8 chr4 71416433 71416557 -130911790 + MLT2B2 LTR ERVL 47 176 -339 297 0 0 0 chr4 71416614 71416647 -130911700 + (A)n Simple_repeat Simple_repeat 1 33 0 847 197 52 28 chr4 71417198 71417411 -130910936 + Charlie1 DNA MER1_type 1500 1717 -1044 2320 229 15 5 chr4 71417411 71418017 -130910330 + L1M4 LINE L1 3356 3967 -2179 2230 92 3 3 chr4 71418122 71418416 -130909931 + AluSx SINE Alu 1 294 -18 1178 221 104 22 chr4 71418812 71419232 -130909115 - MLT1C LTR MaLR -2 465 6 287 300 31 54 chr4 71419252 71419382 -130908965 + MIR3 SINE MIR 30 156 -52 2695 30 0 0 chr4 71419469 71419773 -130908574 + AluY SINE Alu 1 304 -7 23 0 0 0 chr4 71419949 71419972 -130908375 + AT_rich Low_complexity Low_complexity 1 23 0 1648 188 22 80 chr4 71420089 71420202 -130908145 + MLT1B LTR MaLR 1 119 -271 2251 104 3 0 chr4 71420202 71420501 -130907846 + AluSq SINE Alu 1 300 -13 1648 188 22 80 chr4 71420501 71420801 -130907546 + MLT1B LTR MaLR 119 390 0 1251 98 0 0 chr4 71421236 71421399 -130906948 - U1 snRNA snRNA -2 163 1 365 284 61 34 chr4 71421646 71421794 -130906553 + MER5A DNA MER1_type 38 189 0 1929 163 45 27 chr4 71422090 71422626 -130905721 + MLT2A2 LTR ERVL 8 554 0 385 348 38 14 chr4 71422678 71422888 -130905459 - L2 LINE L2 -912 2402 2188 436 255 126 64 chr4 71423225 71424008 -130904339 - HAL1 LINE L1 -798 1709 878 597 187 60 27 chr4 71424526 71424676 -130903671 - L1MC2 LINE L1 -11 6333 6179 206 146 24 0 chr4 71424741 71424782 -130903565 + L2 LINE L2 3272 3313 0 2140 115 32 64 chr4 71425218 71425417 -130902930 + THE1B LTR MaLR 1 184 -180 2297 105 0 7 chr4 71425417 71425721 -130902626 - AluSx SINE Alu -4 308 7 2140 115 32 64 chr4 71425721 71425896 -130902451 + THE1B LTR MaLR 184 363 -1 376 164 0 0 chr4 71426233 71426306 -130902041 + LTR30 LTR ERV1 552 624 -98 324 0 0 0 chr4 71426310 71426346 -130902001 + (A)n Simple_repeat Simple_repeat 1 36 0 260 260 0 0 chr4 71426348 71426421 -130901926 + LTR30 LTR ERV1 552 624 -98 3353 189 50 47 chr4 71426973 71427857 -130900490 + L1MC3 LINE L1 6398 7310 -685 195 42 0 0 chr4 71427857 71427881 -130900466 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 3353 189 50 47 chr4 71427881 71428249 -130900098 + L1MC3 LINE L1 7310 7675 -320 780 128 0 0 chr4 71428276 71428385 -130899962 - FLAM_C SINE Alu -32 111 3 1603 188 0 61 chr4 71429003 71429257 -130899090 + AluJo SINE Alu 1 232 -80 3583 142 42 18 chr4 71429257 71429877 -130898470 + MER41B LTR ERV1 1 635 0 1603 188 0 61 chr4 71429877 71429952 -130898395 + AluJo SINE Alu 232 310 -2 595 227 52 0 chr4 71429956 71430110 -130898237 + L1MCb LINE L1 583 744 -5301 875 217 36 5 chr4 71430238 71430459 -130897888 + L1M4 LINE L1 4063 4290 -1856 1331 223 128 47 chr4 71430466 71430892 -130897455 + MLT2B1 LTR ERVL 9 399 -121 207 0 0 0 chr4 71430892 71430915 -130897432 + (TC)n Simple_repeat Simple_repeat 2 24 0 324 0 0 0 chr4 71430919 71430955 -130897392 + (CA)n Simple_repeat Simple_repeat 2 37 0 1331 223 128 47 chr4 71430955 71430990 -130897357 + MLT2B1 LTR ERVL 401 513 -7 842 219 50 20 chr4 71430995 71431297 -130897050 + L1M4 LINE L1 4288 4598 -1548 * 877 164 113 0 chr4 71431289 71431484 -130896863 + L1MC2 LINE L1 6128 6344 0 3689 203 136 71 chr4 71431497 71432902 -130895445 + L1MD2 LINE L1 25 1598 -4942 1834 88 6 137 chr4 71432902 71433245 -130895102 + AluSg1 SINE Alu 2 299 -10 3689 203 136 71 chr4 71433245 71434321 -130894026 + L1MD2 LINE L1 1598 2602 -3938 588 259 0 0 chr4 71434339 71434455 -130893892 + FLAM_C SINE Alu 3 118 -25 657 209 44 19 chr4 71434478 71434684 -130893663 + L1MD2 LINE L1 2595 2805 -3735 2580 241 42 23 chr4 71434780 71435774 -130892573 + L1MD2 LINE L1 2777 3768 -2772 1168 221 133 56 chr4 71435773 71436174 -130892173 + L1MD2 LINE L1 4275 4718 -1822 * 593 238 129 0 chr4 71436174 71436321 -130892026 + FAM SINE Alu 1 166 -9 1168 221 133 56 chr4 71436321 71436386 -130891961 + L1MD2 LINE L1 4718 4777 -1763 * 2084 193 59 2 chr4 71436385 71436811 -130891536 + L1MC1 LINE L1 5879 6328 -5 281 244 23 47 chr4 71436813 71436899 -130891448 + MER58 DNA MER1_type 129 2417 -3 1175 209 90 24 chr4 71437162 71437573 -130890774 + L1MD2 LINE L1 4764 5201 -1339 2887 248 33 13 chr4 71437577 71438639 -130889708 + L1PBa LINE L1 1 699 -5505 2077 121 0 4 chr4 71438639 71438920 -130889427 + AluSg SINE Alu 1 280 -30 2887 248 33 13 chr4 71438920 71439213 -130889134 + L1PBa LINE L1 699 985 -5219 579 149 101 47 chr4 71439253 71439401 -130888946 + L1PA16 LINE L1 6001 6156 -10 2054 125 3 30 chr4 71439407 71439743 -130888604 + L1PB3 LINE L1 5825 6151 -3 1732 226 53 18 chr4 71439845 71440548 -130887799 + L1MD2 LINE L1 5193 5918 -718 2832 165 138 35 chr4 71440549 71441180 -130887167 - MER44D DNA MER2_type 0 705 10 1128 189 251 5 chr4 71441198 71441627 -130886720 + L1MD2 LINE L1 5921 6539 -214 249 246 0 31 chr4 71441897 71441911 -130886436 - L1PBb LINE L1 -6024 180 167 2100 122 7 0 chr4 71441911 71442207 -130886140 - AluSg SINE Alu -10 300 3 249 246 0 31 chr4 71442207 71442257 -130886090 - L1MEc LINE L1 -6037 167 118 330 380 106 8 chr4 71442258 71442495 -130885852 + L1MEc LINE L1 138 397 -5987 504 208 247 0 chr4 71442498 71442652 -130885695 + MER3 DNA MER1_type 12 203 -6 2234 121 0 3 chr4 71442855 71443169 -130885178 + AluSq SINE Alu 1 313 0 236 288 68 49 chr4 71443587 71443750 -130884597 + L1MEc LINE L1 283 448 -5653 636 226 59 18 chr4 71443909 71444169 -130884178 + L1MEc LINE L1 577 861 -5240 1302 209 40 15 chr4 71444505 71444778 -130883569 + MLT1C LTR MaLR 188 467 0 22 35 0 0 chr4 71444811 71444840 -130883507 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 71445055 71445076 -130883271 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr4 71445127 71445152 -130883195 + (CATATA)n Simple_repeat Simple_repeat 6 30 0 868 83 0 15 chr4 71445664 71445797 -130882550 - FLAM_C SINE Alu -2 131 1 501 206 27 98 chr4 71445973 71446117 -130882230 + L2 LINE L2 3143 3273 -40 1757 174 27 0 chr4 71446117 71446411 -130881936 - AluJo SINE Alu -10 302 1 501 206 27 98 chr4 71446411 71446450 -130881897 + L2 LINE L2 3273 3313 0 2167 109 0 3 chr4 71446638 71446931 -130881416 - AluY SINE Alu -19 292 1 350 172 17 0 chr4 71446988 71447046 -130881301 + AluS SINE Alu 1 59 -242 2376 168 7 32 chr4 71447146 71447521 -130880826 + Tigger2a DNA MER2_type 4 368 -2340 1992 147 134 8 chr4 71447521 71447901 -130880446 - MSTA LTR MaLR 0 428 1 2376 168 7 32 chr4 71447901 71447966 -130880381 + Tigger2a DNA MER2_type 368 433 -1 22 70 0 0 chr4 71448232 71448275 -130880072 + AT_rich Low_complexity Low_complexity 1 43 0 832 235 101 131 chr4 71448425 71448991 -130879356 + MLT1H LTR MaLR 1 549 0 669 313 138 0 chr4 71449064 71449288 -130879059 - MIR SINE MIR -3 259 5 190 93 23 23 chr4 71449322 71449365 -130878982 + (TA)n Simple_repeat Simple_repeat 2 44 0 725 214 125 6 chr4 71449845 71450013 -130878334 + MLT1D LTR MaLR 1 188 -317 1081 211 31 12 chr4 71450116 71450372 -130877975 + L1MC3 LINE L1 5565 5825 -1960 7025 163 28 52 chr4 71450374 71451869 -130876478 + L1MCa LINE L1 20 1479 -4947 689 207 0 41 chr4 71451869 71451921 -130876426 + 5S rRNA rRNA 2 55 -66 9394 52 22 30 chr4 71451921 71453923 -130874424 + L1PA6 LINE L1 4143 6152 -2 689 207 0 41 chr4 71453923 71453991 -130874356 + 5S rRNA rRNA 55 117 -4 212 0 36 0 chr4 71453991 71454019 -130874328 + (CAA)n Simple_repeat Simple_repeat 1 29 0 888 137 66 93 chr4 71454026 71454252 -130874095 + L1MCa LINE L1 1450 1669 -4757 2842 134 138 95 chr4 71454271 71455015 -130873332 + L1MA4A LINE L1 5505 6280 -23 3756 218 51 38 chr4 71455042 71455209 -130873138 + L1MCa LINE L1 2304 2467 -3959 2085 91 40 0 chr4 71455209 71455483 -130872864 + AluSg SINE Alu 21 305 -5 3756 218 51 38 chr4 71455483 71456671 -130871676 + L1MCa LINE L1 2467 3714 -2712 3710 222 162 8 chr4 71456694 71457242 -130871105 + L1PA16 LINE L1 3728 4190 -1956 258 32 0 0 chr4 71457242 71457273 -130871074 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 3710 222 162 8 chr4 71457273 71457866 -130870481 + L1PA16 LINE L1 4190 5045 -1101 258 156 0 0 chr4 71457949 71457994 -130870353 + (CCG)n Simple_repeat Simple_repeat 1 45 0 5148 124 54 14 chr4 71459186 71460286 -130868061 + L1PA16 LINE L1 5023 6157 -9 607 250 17 17 chr4 71460296 71460468 -130867879 + L1MCa LINE L1 4279 4450 -1976 304 240 135 0 chr4 71460466 71460562 -130867785 + L1MC1 LINE L1 606 714 -5331 * 321 256 12 12 chr4 71460573 71460659 -130867688 + L1MC1 LINE L1 678 763 -5282 * 2730 239 24 14 chr4 71460654 71461448 -130866899 + L1MC1 LINE L1 4397 5198 -1366 267 157 20 0 chr4 71461450 71461501 -130866846 + L1MC1 LINE L1 5315 5366 -1198 4624 153 28 1 chr4 71461519 71462296 -130866051 + L1MC1 LINE L1 5945 6742 -9 2263 186 42 68 chr4 71462307 71462909 -130865438 + L1MC3 LINE L1 5817 6402 -1383 4809 124 35 27 chr4 71462910 71463201 -130865146 - Tigger3(Golem) DNA MER2_type -1 3027 2740 1986 91 65 4 chr4 71463201 71463476 -130864871 + AluSq SINE Alu 1 292 -21 4809 124 35 27 chr4 71463476 71464023 -130864324 - Tigger3(Golem) DNA MER2_type -288 2740 2183 779 173 0 15 chr4 71464025 71464158 -130864189 - FLAM_C SINE Alu -2 131 1 1528 176 158 15 chr4 71464173 71464508 -130863839 + MSTA LTR MaLR 46 428 0 3614 156 74 0 chr4 71464508 71465144 -130863203 - MSTA-int LTR MaLR -968 683 1 695 161 108 0 chr4 71465144 71465274 -130863073 - MSTA LTR MaLR 0 428 285 849 106 0 0 chr4 71465374 71465487 -130862860 + AluSg/x SINE Alu 185 297 -15 2026 247 63 53 chr4 71465821 71466378 -130861969 + MLT1E2 LTR MaLR 1 566 -60 2163 70 42 11 chr4 71466378 71466663 -130861684 - AluY SINE Alu -17 294 1 2026 247 63 53 chr4 71466663 71466693 -130861654 + MLT1E2 LTR MaLR 566 594 -32 1247 205 0 0 chr4 71466693 71466908 -130861439 + Tigger3b DNA MER2_type 1 215 -1016 15152 111 100 10 chr4 71466908 71469404 -130858943 + L1PB1 LINE L1 1 2721 -4142 342 0 0 0 chr4 71469404 71469442 -130858905 + (CA)n Simple_repeat Simple_repeat 2 39 0 11420 188 52 17 chr4 71469443 71470812 -130857535 + L1PB1 LINE L1 2799 4120 -2747 2177 135 3 0 chr4 71470812 71471124 -130857223 + AluSq SINE Alu 1 313 0 11420 188 52 17 chr4 71471124 71473623 -130854724 + L1PB1 LINE L1 4120 6811 -56 2554 105 16 5 chr4 71473634 71474005 -130854342 + THE1C LTR MaLR 1 375 0 830 129 45 0 chr4 71474006 71474138 -130854209 + AluSg/x SINE Alu 155 292 -18 326 133 17 0 chr4 71474138 71474198 -130854149 + L1PB1 LINE L1 6806 6866 -1 4761 137 107 12 chr4 71474199 71475119 -130853228 + Tigger3b DNA MER2_type 199 1205 -26 1537 171 100 13 chr4 71475156 71475466 -130852881 + MER1B DNA MER1_type 1 337 0 2367 70 0 0 chr4 71475588 71475872 -130852475 + AluY SINE Alu 3 286 -25 687 178 0 22 chr4 71476211 71476346 -130852001 + MLT1A1 LTR MaLR 21 152 -213 285 91 0 23 chr4 71476353 71476397 -130851950 + MLT1A1 LTR MaLR 323 365 0 673 242 68 32 chr4 71476487 71476739 -130851608 - MIR SINE MIR 0 262 2 2257 198 103 101 chr4 71477034 71477316 -130851031 - L1MC5 LINE L1 -164 7797 7517 876 184 55 51 chr4 71477316 71477533 -130850814 + MER20 DNA MER1_type 2 219 0 2257 198 103 101 chr4 71477533 71478092 -130850255 - L1MC5 LINE L1 -444 7517 6950 180 0 0 0 chr4 71478092 71478112 -130850235 + (TAG)n Simple_repeat Simple_repeat 3 22 0 2257 198 103 101 chr4 71478112 71478343 -130850004 - L1MC5 LINE L1 -1011 6950 6721 198 255 43 53 chr4 71478981 71479075 -130849272 + MIR SINE MIR 166 258 -4 242 246 33 0 chr4 71479228 71479289 -130849058 - L1ME LINE L1 -458 5663 5601 27 0 0 0 chr4 71479934 71479961 -130848386 + AT_rich Low_complexity Low_complexity 1 27 0 291 54 0 0 chr4 71479969 71480006 -130848341 + (CA)n Simple_repeat Simple_repeat 2 38 0 487 133 89 0 chr4 71480270 71480360 -130847987 - L1MA4 LINE L1 -7 6293 6196 216 287 83 28 chr4 71480364 71480472 -130847875 + MIR3 SINE MIR 86 199 -9 862 232 17 59 chr4 71481013 71481250 -130847097 + MIR SINE MIR 15 241 -21 486 79 0 0 chr4 71481616 71481692 -130846655 + (TA)n Simple_repeat Simple_repeat 1 76 0 952 152 0 7 chr4 71481964 71482115 -130846232 - AluJb SINE Alu -28 284 135 320 58 0 19 chr4 71482205 71482257 -130846090 + (TA)n Simple_repeat Simple_repeat 2 52 0 * 432 0 0 0 chr4 71482256 71482304 -130846043 + (GA)n Simple_repeat Simple_repeat 2 49 0 22 70 0 0 chr4 71483435 71483478 -130844869 + AT_rich Low_complexity Low_complexity 1 43 0 788 170 7 0 chr4 71484140 71484275 -130844072 + FLAM_C SINE Alu 1 136 -7 278 229 16 0 chr4 71484556 71484617 -130843730 + MIR SINE MIR 177 238 -24 1512 86 0 0 chr4 71486198 71486395 -130841952 - MER107 DNA MER1_type 0 197 1 853 285 65 75 chr4 71486697 71487216 -130841131 + MLT1F1 LTR MaLR 48 561 -6 715 216 115 18 chr4 71487431 71487649 -130840698 + L1MB8 LINE L1 5931 6169 -9 221 0 35 0 chr4 71487655 71487684 -130840663 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 376 147 0 0 chr4 71487791 71487856 -130840491 + L1MC4 LINE L1 6413 6522 -1311 2304 100 0 10 chr4 71487876 71488187 -130840160 + AluSg SINE Alu 1 308 -2 652 171 18 0 chr4 71488189 71488300 -130840047 - Tigger1 DNA MER2_type 0 2418 2306 1365 196 19 0 chr4 71488300 71488565 -130839782 - AluJb SINE Alu -1 311 42 693 154 0 44 chr4 71488666 71488802 -130839545 + AluSg/x SINE Alu 182 311 -1 7915 120 53 6 chr4 71488807 71490824 -130837523 - Tigger1 DNA MER2_type -218 2200 1 2698 227 136 83 chr4 71490831 71491559 -130836788 + L1MC4 LINE L1 6636 7324 -718 1986 142 0 0 chr4 71491559 71491867 -130836480 + AluSx SINE Alu 1 308 0 2698 227 136 83 chr4 71491867 71492472 -130835875 + L1MC4 LINE L1 7324 8040 -2 422 292 169 23 chr4 71492804 71493195 -130835152 + L1M4 LINE L1 2143 2590 -3556 2030 278 44 26 chr4 71493210 71494122 -130834225 + L2 LINE L2 2332 3265 -48 263 312 25 13 chr4 71494492 71494596 -130833751 - MIR SINE MIR -64 144 79 180 0 0 0 chr4 71494623 71494643 -130833704 + (A)n Simple_repeat Simple_repeat 1 20 0 192 270 63 32 chr4 71494645 71494708 -130833639 - MIR SINE MIR -176 86 22 233 252 163 0 chr4 71494708 71494831 -130833516 + L1M4 LINE L1 2863 3005 -3141 2206 106 0 7 chr4 71495072 71495374 -130832973 + AluSg SINE Alu 1 300 -10 367 180 50 20 chr4 71495375 71495475 -130832872 - L1MC5 LINE L1 -54 7907 7805 1621 145 75 42 chr4 71495963 71496295 -130832052 + MER2 DNA MER2_type 2 344 0 24 0 0 0 chr4 71496458 71496482 -130831865 + AT_rich Low_complexity Low_complexity 1 24 0 2031 227 67 45 chr4 71496734 71497289 -130831058 + MLT1F1 LTR MaLR 1 567 0 1262 218 138 0 chr4 71497988 71498387 -130829960 + L1M4 LINE L1 3325 3778 -2368 299 253 74 0 chr4 71498550 71498645 -130829702 + MIR SINE MIR 160 261 -1 344 109 0 0 chr4 71498721 71498776 -130829571 + L1MB2 LINE L1 6101 6155 -16 1582 172 4 7 chr4 71498799 71499072 -130829275 + AluJo SINE Alu 36 307 -5 342 242 158 30 chr4 71499100 71499265 -130829082 - MIR SINE MIR -64 198 13 396 59 0 0 chr4 71499731 71499782 -130828565 + (CA)n Simple_repeat Simple_repeat 2 52 0 207 275 72 0 chr4 71499959 71500028 -130828319 + L2 LINE L2 2154 2227 -1087 503 368 78 14 chr4 71500051 71500399 -130827948 + L2 LINE L2 2368 2737 -577 772 261 28 11 chr4 71500574 71500754 -130827593 + MER5A DNA MER1_type 1 183 -6 205 281 178 7 chr4 71500763 71500909 -130827438 + L2 LINE L2 2911 3081 -191 692 239 42 0 chr4 71501024 71501191 -130827156 + MER96 DNA MER1_type 1 174 -1 220 318 12 35 chr4 71501292 71501377 -130826970 + MIR3 SINE MIR 94 176 -32 197 256 357 16 chr4 71501626 71501755 -130826592 - MIR SINE MIR -62 200 28 2606 199 62 0 chr4 71501998 71502527 -130825820 + MER68 LTR ERV1 1 562 0 343 209 67 90 chr4 71502647 71502781 -130825566 + L2 LINE L2 3168 3298 -15 1399 229 77 53 chr4 71503459 71503874 -130824473 + MLT1D LTR MaLR 81 505 0 183 222 0 0 chr4 71503941 71503977 -130824370 + L2 LINE L2 3222 3257 -15 22 56 0 0 chr4 71504282 71504318 -130824029 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr4 71504430 71504455 -130823892 + AT_rich Low_complexity Low_complexity 1 25 0 215 255 43 75 chr4 71505411 71505505 -130822842 - MIR3 SINE MIR -10 198 108 30 45 0 0 chr4 71505553 71505597 -130822750 + AT_rich Low_complexity Low_complexity 1 44 0 192 329 79 0 chr4 71505597 71505673 -130822674 + MIR3 SINE MIR 110 191 -17 2363 97 0 0 chr4 71505709 71506008 -130822339 + AluSx SINE Alu 1 299 -13 415 134 62 0 chr4 71506140 71506216 -130822131 + MLT1E2 LTR MaLR 443 607 -19 2164 127 0 0 chr4 71507694 71507986 -130820361 - AluSx SINE Alu -19 293 2 22 56 0 0 chr4 71508224 71508260 -130820087 + AT_rich Low_complexity Low_complexity 1 36 0 291 270 26 9 chr4 71509917 71510032 -130818315 + (TA)n Simple_repeat Simple_repeat 1 117 0 583 234 105 29 chr4 71510096 71510305 -130818042 + L1MDa LINE L1 53 277 -6263 1192 235 41 51 chr4 71510788 71510929 -130817418 + L1MDa LINE L1 843 984 -5559 2124 119 0 0 chr4 71510929 71511256 -130817091 + AluSx SINE Alu 1 327 0 1192 235 41 51 chr4 71511256 71511581 -130816766 + L1MDa LINE L1 984 1305 -5238 25 0 0 0 chr4 71511616 71511641 -130816706 + AT_rich Low_complexity Low_complexity 1 25 0 2437 163 190 32 chr4 71511662 71512308 -130816039 + L1MB2 LINE L1 5422 6169 -2 513 235 99 76 chr4 71512446 71512857 -130815490 - MLT1G LTR MaLR 0 590 102 3386 179 46 43 chr4 71512857 71512917 -130815430 + L1MC3 LINE L1 6239 6297 -1488 2160 132 0 0 chr4 71512917 71513213 -130815134 + AluSq SINE Alu 1 296 -17 3386 179 46 43 chr4 71513213 71513229 -130815118 + L1MC3 LINE L1 6297 6311 -1474 1911 136 10 7 chr4 71513229 71513524 -130814823 + AluSx SINE Alu 1 296 -16 3386 179 46 43 chr4 71513524 71514207 -130814140 + L1MC3 LINE L1 6311 7001 -784 1163 232 83 58 chr4 71514208 71514446 -130813901 + L1M4 LINE L1 3084 3315 -2831 8844 99 7 13 chr4 71514446 71516550 -130811797 + L1PA8 LINE L1 4060 6171 -1 1163 232 83 58 chr4 71516550 71516989 -130811358 + L1M4 LINE L1 3315 3778 -2368 923 245 84 15 chr4 71517006 71517398 -130810949 + L1M4 LINE L1 2639 3057 -3089 * 995 239 78 24 chr4 71517394 71517693 -130810654 + L1M4 LINE L1 3782 4106 -2040 1604 208 7 3 chr4 71517693 71517996 -130810351 - AluJo SINE Alu -6 306 3 995 239 78 24 chr4 71517996 71518068 -130810279 + L1M4 LINE L1 4106 4173 -1973 251 243 124 34 chr4 71518123 71518300 -130810047 + L1M4 LINE L1 4060 4252 -1894 4451 175 22 27 chr4 71518526 71519510 -130808837 - L1MB4 LINE L1 -25 6155 5176 216 0 0 0 chr4 71519513 71519537 -130808810 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2038 117 0 3 chr4 71519540 71519823 -130808524 - AluSx SINE Alu -30 282 1 309 326 109 47 chr4 71519940 71520326 -130808021 + L1M4 LINE L1 4639 5048 -1098 21 0 0 0 chr4 71521384 71521405 -130806942 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 71521453 71521476 -130806871 + AT_rich Low_complexity Low_complexity 1 23 0 1405 229 56 111 chr4 71521571 71522049 -130806298 + MER68 LTR ERV1 3 443 -119 7119 57 0 1 chr4 71522049 71523099 -130805248 + L1PA5 LINE L1 5098 6146 -8 1405 229 56 111 chr4 71523099 71523213 -130805134 + MER68 LTR ERV1 443 562 0 2515 109 3 0 chr4 71523277 71523627 -130804720 + THE1A LTR MaLR 5 355 0 307 251 171 53 chr4 71523694 71523881 -130804466 + HAL1 LINE L1 37 245 -2262 1763 164 24 3 chr4 71523953 71524240 -130804107 + AluJo SINE Alu 1 293 -19 2034 123 35 0 chr4 71524331 71524615 -130803732 + AluSq SINE Alu 1 294 -19 779 291 122 32 chr4 71524632 71525106 -130803241 + HAL1 LINE L1 417 933 -1574 1438 229 139 88 chr4 71525148 71526211 -130802136 + HAL1 LINE L1 1389 2506 -1 379 264 174 36 chr4 71526363 71526639 -130801708 + L1M4 LINE L1 3331 3644 -2502 367 261 72 49 chr4 71526902 71527100 -130801247 + L1M4 LINE L1 3060 3252 -2894 535 174 29 80 chr4 71527100 71527238 -130801109 + FLAM_A SINE Alu 3 133 0 367 261 72 49 chr4 71527238 71527430 -130800917 + L1M4 LINE L1 3252 3459 -2687 787 173 8 0 chr4 71527570 71527697 -130800650 + AluJo SINE Alu 1 128 -174 1991 137 0 0 chr4 71527706 71527990 -130800357 + AluSx SINE Alu 1 284 -28 728 213 18 35 chr4 71528011 71528206 -130800141 + AluJo SINE Alu 118 309 0 250 286 29 19 chr4 71528242 71528347 -130800000 + L1M4 LINE L1 3543 3648 -2498 516 208 81 0 chr4 71528359 71528532 -130799815 - L1M4 LINE L1 -3086 3060 2874 1266 254 179 10 chr4 71528568 71529072 -130799275 + L1MEc LINE L1 62 650 -5746 421 226 161 21 chr4 71529202 71529388 -130798959 + L1M4 LINE L1 3652 3863 -2283 1912 164 0 3 chr4 71530582 71530887 -130797460 + AluSx SINE Alu 1 304 -8 22 56 0 0 chr4 71531325 71531361 -130796986 + AT_rich Low_complexity Low_complexity 1 36 0 2356 209 33 33 chr4 71531701 71532304 -130796043 - L1MD2 LINE L1 -19 6340 5738 871 219 47 19 chr4 71532338 71532553 -130795794 - MER58A DNA MER1_type -3 221 1 253 354 21 31 chr4 71532643 71532739 -130795608 - L3b LINE CR1 -6 1577 1483 294 355 2 10 chr4 71532840 71532947 -130795400 - MIR3 SINE MIR -52 156 48 491 86 12 0 chr4 71535182 71535263 -130793084 + Alu SINE Alu 220 301 -9 269 313 78 16 chr4 71536356 71536484 -130791863 + MIR3 SINE MIR 70 205 -3 26 0 0 0 chr4 71536493 71536519 -130791828 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr4 71536637 71536663 -130791684 + AT_rich Low_complexity Low_complexity 1 26 0 369 288 179 11 chr4 71536692 71536876 -130791471 + MIR SINE MIR 33 247 -15 572 264 181 5 chr4 71536979 71537195 -130791152 - MIR SINE MIR -1 261 8 1178 198 177 60 chr4 71537987 71538332 -130790015 + L1ME1 LINE L1 5733 6129 -37 1762 158 7 24 chr4 71538332 71538630 -130789717 - AluJb SINE Alu -19 293 1 1178 198 177 60 chr4 71538630 71538668 -130789679 + L1ME1 LINE L1 6129 6161 -5 335 298 108 36 chr4 71538709 71539098 -130789249 + L1MC4 LINE L1 7617 8033 -9 1317 156 19 27 chr4 71539933 71540059 -130788288 - Tigger6 DNA MER2_type 0 1597 1472 2252 92 7 10 chr4 71540059 71540194 -130788153 + AluSx SINE Alu 1 135 -177 2414 67 0 10 chr4 71540194 71540506 -130787841 + AluY SINE Alu 1 309 -2 2252 92 7 10 chr4 71540506 71540674 -130787673 + AluSx SINE Alu 135 303 -9 1317 156 19 27 chr4 71540674 71540810 -130787537 - Tigger6 DNA MER2_type -125 1472 1337 481 157 114 93 chr4 71540856 71540996 -130787351 - Tigger6 DNA MER2_type -249 1348 1206 378 0 0 0 chr4 71541118 71541160 -130787187 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 1156 159 14 43 chr4 71541285 71541493 -130786854 + AluJo SINE Alu 1 202 -110 226 237 17 0 chr4 71541495 71541554 -130786793 + FAM SINE Alu 116 175 -4 264 257 82 82 chr4 71541653 71541690 -130786657 - LTR67 LTR ERVL -1 556 520 2205 85 0 20 chr4 71541690 71541995 -130786352 + AluSx SINE Alu 1 299 -13 264 257 82 82 chr4 71541995 71542140 -130786207 - LTR67 LTR ERVL -36 521 374 4184 58 45 0 chr4 71542281 71542836 -130785511 - LTR19B LTR ERV1 0 580 1 830 187 14 0 chr4 71542866 71543005 -130785342 + AluSx SINE Alu 3 143 -169 1215 107 0 0 chr4 71543263 71543432 -130784915 + AluSx SINE Alu 144 312 0 637 198 0 9 chr4 71543658 71543774 -130784573 + FLAM_A SINE Alu 1 115 -18 521 240 0 0 chr4 71544050 71544154 -130784193 + AluSx SINE Alu 40 143 -169 1215 107 0 0 chr4 71544412 71544581 -130783766 + AluSx SINE Alu 144 312 0 714 164 0 9 chr4 71544807 71544923 -130783424 + FLAM_A SINE Alu 1 115 -18 207 0 0 0 chr4 71544936 71544959 -130783388 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1878 145 0 7 chr4 71545721 71546036 -130782311 + AluSx SINE Alu 3 315 0 199 370 31 25 chr4 71546919 71547081 -130781266 - L2 LINE L2 -214 3058 2896 207 405 0 0 chr4 71547300 71547379 -130780968 - L2 LINE L2 -642 2672 2594 * 399 265 10 20 chr4 71547374 71547476 -130780871 - MIR3 SINE MIR -46 162 62 1954 165 50 13 chr4 71548919 71549148 -130779199 - MSTD LTR MaLR 0 396 146 1831 176 0 3 chr4 71549148 71549449 -130778898 + AluJo SINE Alu 1 300 -12 1954 165 50 13 chr4 71549449 71549601 -130778746 - MSTD LTR MaLR -250 146 1 267 103 0 0 chr4 71549645 71549684 -130778663 + (A)n Simple_repeat Simple_repeat 1 39 0 288 53 0 0 chr4 71550109 71550147 -130778200 + (TG)n Simple_repeat Simple_repeat 2 39 0 369 227 62 39 chr4 71551714 71551842 -130776505 + MIR SINE MIR 63 193 -69 265 320 117 0 chr4 71551851 71551954 -130776393 - L2 LINE L2 0 3313 3199 312 48 0 0 chr4 71552104 71552146 -130776201 + (TG)n Simple_repeat Simple_repeat 1 42 0 1573 169 19 0 chr4 71552146 71552407 -130775940 - AluJb SINE Alu -33 279 14 236 296 28 0 chr4 71552461 71552532 -130775815 + MIR SINE MIR 142 214 -48 185 397 134 6 chr4 71553069 71553248 -130775099 + L3b LINE CR1 1302 1503 -80 2299 91 7 0 chr4 71553263 71553602 -130774745 + AluSc SINE Alu 1 341 0 1052 110 13 7 chr4 71553673 71553827 -130774520 + AluSg/x SINE Alu 142 296 -16 2273 78 0 23 chr4 71553955 71554262 -130774085 + AluY SINE Alu 1 300 -11 404 188 73 10 chr4 71554352 71554448 -130773899 - Charlie7 DNA MER1_type -2509 103 2 189 314 248 0 chr4 71554600 71554705 -130773642 + MIR3 SINE MIR 14 144 -64 1880 135 11 0 chr4 71554900 71555174 -130773173 + AluJo SINE Alu 6 282 -30 23 0 0 0 chr4 71555461 71555484 -130772863 + AT_rich Low_complexity Low_complexity 1 23 0 205 262 0 0 chr4 71556070 71556112 -130772235 - L3 LINE CR1 -4 1573 1532 1790 103 12 24 chr4 71556136 71556408 -130771939 + AluSx SINE Alu 35 303 0 451 273 47 0 chr4 71557326 71557454 -130770893 - L1MB7 LINE L1 -68 6116 5983 2261 106 3 0 chr4 71557462 71557773 -130770574 - AluSx SINE Alu 0 312 1 1840 159 3 16 chr4 71558213 71558521 -130769826 + AluSx SINE Alu 1 304 -8 272 254 0 0 chr4 71559022 71559085 -130769262 + MLT1H LTR MaLR 57 119 -430 486 257 174 58 chr4 71559123 71559520 -130768827 + MLT1H LTR MaLR 107 549 0 415 290 0 8 chr4 71560251 71560375 -130767972 - MIR SINE MIR 0 262 140 7003 125 35 26 chr4 71560492 71561272 -130767075 - Tigger3b DNA MER2_type -1797 1231 435 1904 141 3 3 chr4 71561272 71561555 -130766792 - AluSx SINE Alu -29 283 1 7003 125 35 26 chr4 71561555 71561994 -130766353 - Tigger3b DNA MER2_type -2593 435 1 1025 155 25 0 chr4 71562048 71562209 -130766138 + FRAM SINE Alu 8 172 -4 405 131 36 0 chr4 71562213 71562297 -130766050 + GA-rich Low_complexity Low_complexity 2 88 0 614 182 0 91 chr4 71562309 71562452 -130765895 + FLAM_A SINE Alu 1 130 -3 447 287 8 0 chr4 71563590 71563712 -130764635 + MIR SINE MIR 2 124 -138 377 283 53 27 chr4 71563714 71563901 -130764446 - LTR33 LTR ERVL -2 519 328 662 277 64 0 chr4 71563974 71564162 -130764185 - LTR33 LTR ERVL -321 200 1 431 267 8 25 chr4 71564163 71564283 -130764064 + MIR SINE MIR 126 243 -19 * 454 316 107 0 chr4 71564282 71564469 -130763878 - MIR SINE MIR -50 212 6 738 272 149 40 chr4 71564596 71564919 -130763428 + L3 LINE CR1 1194 1551 -26 276 111 222 0 chr4 71565144 71565216 -130763131 - L1MA8 LINE L1 -3 6288 6201 1002 189 91 39 chr4 71565590 71566155 -130762192 + MER63 DNA MER1_type 1 656 -405 640 250 102 5 chr4 71566155 71566351 -130761996 + MER58C DNA MER1_type 1 215 0 * 2107 170 27 8 chr4 71566351 71566749 -130761598 + MER63 DNA MER1_type 653 1058 -2 378 290 23 46 chr4 71567534 71567665 -130760682 + MIR SINE MIR 11 138 -124 658 294 32 64 chr4 71567667 71567980 -130760367 + L2 LINE L2 3011 3313 0 342 291 39 0 chr4 71568004 71568107 -130760240 + MIR SINE MIR 148 254 -8 1231 148 69 5 chr4 71568107 71568309 -130760038 - AluJb SINE Alu -87 225 11 438 267 39 63 chr4 71568823 71569029 -130759318 - L2 LINE L2 -9 3304 3104 2214 129 3 0 chr4 71569165 71569474 -130758873 - AluSx SINE Alu -2 310 1 21 36 0 0 chr4 71569483 71569511 -130758836 + AT_rich Low_complexity Low_complexity 1 28 0 2121 96 0 77 chr4 71570356 71570679 -130757668 - AluSx SINE Alu -14 298 1 472 258 13 129 chr4 71570833 71570964 -130757383 + MIR SINE MIR 14 159 -103 2482 143 57 2 chr4 71570964 71571370 -130756977 - MSTA LTR MaLR 0 428 1 472 258 13 129 chr4 71571370 71571399 -130756948 + MIR SINE MIR 159 144 -118 1987 121 29 0 chr4 71571399 71571679 -130756668 - AluSx SINE Alu -20 292 5 472 258 13 129 chr4 71571679 71571742 -130756605 + MIR SINE MIR 143 212 -50 247 268 49 0 chr4 71573769 71573828 -130754519 - L1ME4a LINE L1 -74 6047 5981 1910 155 13 0 chr4 71573828 71574132 -130754215 - AluJb SINE Alu -2 310 3 247 268 49 0 chr4 71574132 71574154 -130754193 - L1ME4a LINE L1 -140 5981 5962 2159 129 29 6 chr4 71574227 71574568 -130753779 + MER47A DNA MER2_type 18 366 0 2322 99 0 0 chr4 71575343 71575646 -130752701 + AluY SINE Alu 1 303 -8 1198 226 60 126 chr4 71575768 71576454 -130751893 - L2 LINE L2 0 3313 2673 26 0 0 0 chr4 71576751 71576777 -130751570 + AT_rich Low_complexity Low_complexity 1 26 0 2282 114 0 0 chr4 71577703 71578009 -130750338 + AluSg SINE Alu 1 306 -4 2468 82 0 9 chr4 71579234 71579550 -130748797 - AluSp SINE Alu 0 313 1 225 0 0 0 chr4 71579566 71579591 -130748756 + (A)n Simple_repeat Simple_repeat 1 25 0 254 95 24 0 chr4 71579868 71579910 -130748437 + (ATG)n Simple_repeat Simple_repeat 1 43 0 2445 63 0 0 chr4 71579933 71580235 -130748112 - AluY SINE Alu -9 302 1 422 203 154 16 chr4 71580449 71580572 -130747775 - MIR SINE MIR -13 249 110 1679 165 10 10 chr4 71581336 71581627 -130746720 - AluJo SINE Alu -17 295 5 180 0 0 0 chr4 71582272 71582292 -130746055 + (T)n Simple_repeat Simple_repeat 1 20 0 284 281 56 0 chr4 71582945 71583034 -130745313 - MIR SINE MIR -48 214 121 1013 151 24 6 chr4 71583653 71583819 -130744528 - FAM SINE Alu -6 169 1 424 171 0 0 chr4 71583750 71583820 -130744527 - FRAM/FAM SINE Alu -107 69 1 1836 163 3 7 chr4 71584221 71584510 -130743837 - AluJo SINE Alu -24 288 1 207 0 0 0 chr4 71584915 71584938 -130743409 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 435 213 185 9 chr4 71585447 71585555 -130742792 - MER45A DNA AcHobo -50 128 2 649 292 117 64 chr4 71585870 71586212 -130742135 - L3 LINE CR1 -3 1574 1215 1490 207 90 14 chr4 71586308 71586800 -130741547 - L1M LINE L1 -743 5403 4880 966 186 125 68 chr4 71586803 71587082 -130741265 + AluJo SINE Alu 11 305 -7 1088 244 129 16 chr4 71587085 71587581 -130740766 - L1M4 LINE L1 -1255 4891 4340 1964 133 58 22 chr4 71587581 71587943 -130740404 + THE1C LTR MaLR 1 375 0 9688 125 20 34 chr4 71587945 71589544 -130738803 + THE1C-int LTR MaLR 4 1580 0 922 141 97 16 chr4 71589544 71589729 -130738618 + THE1C LTR MaLR 1 200 -164 3134 119 11 2 chr4 71589733 71590433 -130737914 - L1M1 LINE L1 -577 7147 6442 21389 159 35 13 chr4 71590446 71591156 -130737191 - L1M1 LINE L1 -2199 5366 4673 2364 103 0 0 chr4 71591156 71591468 -130736879 - AluSx SINE Alu 0 312 1 21389 159 35 13 chr4 71591468 71595996 -130732351 - L1M1 LINE L1 -2892 4673 12 841 235 58 107 chr4 71595993 71596422 -130731925 - L1MDb LINE L1 -5227 856 449 * 370 312 71 18 chr4 71596483 71596653 -130731694 - L1MDb LINE L1 -5622 448 270 229 340 57 50 chr4 71598537 71598678 -130729669 + MER5A DNA MER1_type 46 187 -2 827 203 41 35 chr4 71598716 71598913 -130729434 + MLT1B LTR MaLR 193 390 0 269 220 17 161 chr4 71598951 71599069 -130729278 + MER5A DNA MER1_type 86 186 -3 385 292 107 45 chr4 71599894 71599933 -130728414 + L1MEc LINE L1 1011 1046 -5350 207 0 0 0 chr4 71599933 71599956 -130728391 + (CCA)n Simple_repeat Simple_repeat 3 25 0 385 292 107 45 chr4 71599956 71600327 -130728020 + L1MEc LINE L1 1046 1393 -5003 2213 98 3 0 chr4 71600327 71600622 -130727725 - AluSp SINE Alu -17 296 1 385 292 107 45 chr4 71600622 71600902 -130727445 + L1MEc LINE L1 1393 1756 -4640 1329 223 127 3 chr4 71600902 71601225 -130727122 - MLT1A1 LTR MaLR 0 365 3 385 292 107 45 chr4 71601225 71601292 -130727055 + L1MEc LINE L1 1756 1817 -4579 538 223 147 45 chr4 71601414 71601782 -130726565 - MLT1G3 LTR MaLR 0 590 141 377 167 0 0 chr4 71601812 71601872 -130726475 - MLT1G3 LTR MaLR -533 62 3 575 289 158 15 chr4 71602144 71602404 -130725943 - LTR50 LTR ERVL -496 299 3 1227 248 73 104 chr4 71602532 71602637 -130725710 + L1MEc LINE L1 2179 2286 -3929 527 206 48 16 chr4 71602637 71602763 -130725584 + FLAM_A SINE Alu 1 130 -3 1227 248 73 104 chr4 71602763 71603805 -130724542 + L1MEc LINE L1 2286 3290 -2925 2170 118 7 0 chr4 71603852 71604157 -130724190 + AluSg SINE Alu 1 307 -3 259 243 0 27 chr4 71604261 71604335 -130724012 + L1MEd LINE L1 16 87 -6032 413 333 69 37 chr4 71604639 71605181 -130723166 + L1MEd LINE L1 499 4774 -1355 5294 62 34 24 chr4 71605211 71605969 -130722378 + MER4E LTR ERV1 1 766 0 693 286 159 18 chr4 71606074 71606604 -130721743 + L1MEd LINE L1 4947 5401 -746 1909 171 102 20 chr4 71606604 71606996 -130721351 + MSTB LTR MaLR 3 426 0 693 286 159 18 chr4 71606996 71607320 -130721027 + L1MEd LINE L1 5401 5929 -218 288 266 57 94 chr4 71607382 71607574 -130720773 + L1ME3A LINE L1 5945 6129 -24 21 36 0 0 chr4 71608342 71608370 -130719977 + AT_rich Low_complexity Low_complexity 1 28 0 1566 126 0 0 chr4 71610926 71611148 -130717199 + AluSx SINE Alu 7 228 -84 186 361 130 12 chr4 71611336 71611505 -130716842 + L2 LINE L2 2549 2737 -577 399 300 94 22 chr4 71611990 71612170 -130716177 - L2 LINE L2 -307 3006 2814 189 311 0 0 chr4 71612167 71612212 -130716135 + L2 LINE L2 3137 3181 -91 * 245 276 200 52 chr4 71612244 71612454 -130715893 - MIR SINE MIR -7 255 15 186 317 0 0 chr4 71612476 71612517 -130715830 + L2 LINE L2 3264 3304 -9 844 266 90 84 chr4 71612888 71613047 -130715300 - L2 LINE L2 0 3313 3156 2192 89 3 10 chr4 71613047 71613351 -130714996 + AluSx SINE Alu 1 302 -10 844 266 90 84 chr4 71613351 71613736 -130714611 - L2 LINE L2 -157 3156 2765 548 246 125 99 chr4 71613734 71614047 -130714300 + L2 LINE L2 2992 3312 -1 * 418 311 27 8 chr4 71615053 71615299 -130713048 - L1MC/D LINE L1 -2044 5764 5456 21 0 0 0 chr4 71615994 71616015 -130712332 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 71616310 71616340 -130712007 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr4 71616909 71616937 -130711410 + AT_rich Low_complexity Low_complexity 1 28 0 328 253 0 32 chr4 71618172 71618267 -130710080 + L2 LINE L2 3149 3240 -73 810 317 57 40 chr4 71619406 71619810 -130708537 + L2 LINE L2 1001 1411 -1903 425 267 187 40 chr4 71619828 71620154 -130708193 + L2 LINE L2 2818 3191 -122 287 271 0 42 chr4 71620202 71620298 -130708049 + L2 LINE L2 3149 3240 -73 219 273 52 39 chr4 71620507 71620584 -130707763 + L2 LINE L2 3234 3311 -2 725 174 0 30 chr4 71622607 71622739 -130705608 + FLAM_A SINE Alu 1 128 -5 27 0 0 0 chr4 71623609 71623636 -130704711 + AT_rich Low_complexity Low_complexity 1 27 0 513 215 20 82 chr4 71623947 71624142 -130704205 + L1MC5 LINE L1 7743 7925 -36 224 287 193 33 chr4 71624163 71624313 -130704034 - L2 LINE L2 -1366 1948 1775 544 209 27 0 chr4 71624366 71624476 -130703871 + FLAM_A SINE Alu 4 116 -17 572 222 62 14 chr4 71624589 71624733 -130703614 - MIR SINE MIR 0 262 112 22 56 0 0 chr4 71626931 71626967 -130701380 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr4 71627603 71627631 -130700716 + AT_rich Low_complexity Low_complexity 1 28 0 226 312 65 11 chr4 71627762 71627855 -130700492 - L2 LINE L2 -2 3270 3173 6268 76 27 76 chr4 71628016 71628408 -130699939 + SVA Other Other 4 1403 -991 6268 83 31 98 chr4 71628408 71629618 -130698729 + SVA Other Other 272 1403 0 211 387 24 30 chr4 71630306 71630474 -130697873 - L2 LINE L2 -424 2890 2724 21 36 0 0 chr4 71630979 71631007 -130697340 + AT_rich Low_complexity Low_complexity 1 28 0 1515 142 75 51 chr4 71631283 71631614 -130696733 - MER44D DNA MER2_type 0 609 1 638 186 0 62 chr4 71632118 71632263 -130696084 - AluJo SINE Alu -176 136 1 699 247 43 5 chr4 71633329 71633515 -130694832 + MER58A DNA MER1_type 29 221 -3 301 309 167 25 chr4 71634171 71634375 -130693972 - HAL1 LINE L1 -799 1708 1476 270 303 41 21 chr4 71634383 71634528 -130693819 - L1MEd LINE L1 -4865 1254 1107 22 0 0 0 chr4 71634620 71634642 -130693705 + AT_rich Low_complexity Low_complexity 1 22 0 706 23 0 0 chr4 71634776 71634862 -130693485 + L1PA3 LINE L1 6067 6152 -3 347 240 48 10 chr4 71635435 71635539 -130692808 + MER103 DNA DNA 52 159 -7 257 212 101 71 chr4 71636056 71636155 -130692192 - MIR SINE MIR -72 190 89 2174 115 7 0 chr4 71636968 71637264 -130691083 + AluSg SINE Alu 1 298 -12 432 237 0 31 chr4 71637398 71637495 -130690852 - MER58B DNA MER1_type 0 341 248 38 0 0 0 chr4 71638562 71638600 -130689747 + AT_rich Low_complexity Low_complexity 1 38 0 1746 125 96 7 chr4 71638812 71639093 -130689254 - AluSx SINE Alu -4 308 3 2312 85 0 0 chr4 71639425 71639719 -130688628 - AluY SINE Alu -14 297 4 2232 107 0 10 chr4 71639836 71640144 -130688203 + AluSg SINE Alu 1 305 -5 505 351 27 22 chr4 71641871 71642056 -130686291 - MIR SINE MIR -73 189 4 286 338 25 20 chr4 71642991 71643189 -130685158 + HAL1b LINE L1 249 447 -901 351 275 50 0 chr4 71643197 71643317 -130685030 + HAL1b LINE L1 483 608 -740 1262 224 73 62 chr4 71643325 71644203 -130684144 + L1ME1 LINE L1 4725 5609 -557 36912 102 16 17 chr4 71644209 71650347 -130678000 + L1PA13 LINE L1 11 6160 -3 897 216 100 12 chr4 71650339 71650598 -130677749 + L1ME1 LINE L1 5812 6093 -73 * 233 257 0 0 chr4 71650704 71650778 -130677569 - Tigger8 DNA MER2_type -130 536 463 989 158 50 27 chr4 71650924 71651145 -130677202 + THE1C LTR MaLR 1 226 -149 9467 126 28 31 chr4 71651359 71652944 -130675403 + THE1C-int LTR MaLR 1 1580 0 1522 136 122 35 chr4 71652944 71653289 -130675058 + THE1C LTR MaLR 1 375 0 485 332 70 16 chr4 71653290 71653546 -130674801 - Tigger8 DNA MER2_type -388 278 9 481 262 119 24 chr4 71653621 71653789 -130674558 - MIR SINE MIR -26 236 53 1967 122 20 0 chr4 71654144 71654438 -130673909 - AluSx SINE Alu -8 304 5 534 286 63 11 chr4 71654918 71655093 -130673254 - MIR SINE MIR -8 254 71 23 0 0 0 chr4 71655886 71655909 -130672438 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 71656108 71656131 -130672216 + AT_rich Low_complexity Low_complexity 1 23 0 31 0 0 0 chr4 71656401 71656432 -130671915 + AT_rich Low_complexity Low_complexity 1 31 0 198 91 0 0 chr4 71657093 71657126 -130671221 + (T)n Simple_repeat Simple_repeat 1 33 0 393 284 146 74 chr4 71657175 71657717 -130670630 + L1M4 LINE L1 4651 5231 -915 920 183 43 6 chr4 71657722 71657886 -130670461 + FAM SINE Alu 2 171 -4 186 104 60 30 chr4 71658018 71658085 -130670262 + (TA)n Simple_repeat Simple_repeat 1 69 0 1735 180 3 0 chr4 71658289 71658584 -130669763 + AluJo SINE Alu 17 312 0 23 54 0 0 chr4 71658866 71658903 -130669444 + AT_rich Low_complexity Low_complexity 1 37 0 346 292 10 10 chr4 71659348 71659444 -130668903 + L2 LINE L2 1169 1264 -2050 24 0 0 0 chr4 71661567 71661591 -130666756 + AT_rich Low_complexity Low_complexity 1 24 0 1725 166 20 3 chr4 71661627 71661923 -130666424 - AluSx SINE Alu -11 301 1 554 265 9 100 chr4 71663577 71663807 -130664540 + L2 LINE L2 2445 2653 -661 579 159 58 51 chr4 71663819 71663957 -130664390 - Charlie1 DNA MER1_type 0 2761 2623 * 926 204 75 13 chr4 71663941 71664167 -130664180 - Charlie1 DNA MER1_type -2519 242 3 1103 301 55 56 chr4 71664170 71664806 -130663541 + L2 LINE L2 2662 3308 -5 1817 105 4 15 chr4 71664852 71665119 -130663228 + AluSx SINE Alu 43 306 -6 1422 229 89 25 chr4 71665931 71666367 -130661980 + LTR40c LTR ERVL 1 464 -1 2155 331 64 64 chr4 71666378 71666530 -130661817 - L1MEd LINE L1 -4890 1229 1078 1942 99 3 27 chr4 71666530 71666822 -130661525 - AluSx SINE Alu 0 312 28 2155 331 64 64 chr4 71666822 71667350 -130660997 - L1MEd LINE L1 -5041 1078 546 2523 66 0 0 chr4 71667350 71667654 -130660693 - AluSp SINE Alu -9 304 1 2155 331 64 64 chr4 71667654 71668176 -130660171 - L1MEd LINE L1 -5572 547 26 23 0 0 0 chr4 71669053 71669076 -130659271 + AT_rich Low_complexity Low_complexity 1 23 0 253 90 90 0 chr4 71669386 71669475 -130658872 + (TA)n Simple_repeat Simple_repeat 1 97 0 23 33 0 0 chr4 71669710 71669740 -130658607 + AT_rich Low_complexity Low_complexity 1 30 0 232 323 10 0 chr4 71669903 71670002 -130658345 + L1MC5 LINE L1 4084 4183 -1963 * 1666 242 97 13 chr4 71669996 71670533 -130657814 + L1MC5 LINE L1 5372 5953 -1855 1404 196 67 81 chr4 71671193 71671959 -130656388 + L1MC5 LINE L1 6828 7640 -321 1411 199 131 116 chr4 71671960 71672494 -130655853 + MLT1E LTR MaLR 1 593 0 699 218 65 42 chr4 71672494 71672755 -130655592 + L1MC5 LINE L1 7637 7903 -58 366 223 102 24 chr4 71673037 71673203 -130655144 - L1ME4a LINE L1 -21 6100 5922 * 558 200 67 50 chr4 71673196 71673376 -130654971 + L1MC5 LINE L1 7185 7367 -594 732 226 172 40 chr4 71673611 71673898 -130654449 + MER102a DNA MER1_type 7 322 -8 23 0 0 0 chr4 71674288 71674311 -130654036 + AT_rich Low_complexity Low_complexity 1 23 0 328 275 48 34 chr4 71674598 71674792 -130653555 - L1ME4a LINE L1 -222 5948 5758 1826 74 0 0 chr4 71674792 71675022 -130653325 - MER30 DNA MER1_type 0 230 1 328 275 48 34 chr4 71675022 71675122 -130653225 - L1ME4a LINE L1 -412 5758 5555 1750 160 3 20 chr4 71675122 71675422 -130652925 + AluJb SINE Alu 1 295 -17 323 274 95 0 chr4 71675519 71675603 -130652744 + MER68 LTR ERV1 23 114 -448 313 317 59 11 chr4 71675922 71676108 -130652239 - L1M4 LINE L1 -3438 2708 2514 801 246 130 9 chr4 71676153 71676368 -130651979 - MIR SINE MIR -17 245 5 719 235 4 77 chr4 71676368 71676615 -130651732 - HAL1 LINE L1 -23 2484 2256 409 280 84 21 chr4 71676616 71676759 -130651588 + L2 LINE L2 2692 2843 -471 503 169 270 7 chr4 71676759 71676907 -130651440 + MSTD-int LTR MaLR 1548 1734 -1 1740 183 27 15 chr4 71676907 71677240 -130651107 + MSTD LTR MaLR 1 337 -59 824 283 35 16 chr4 71677472 71677730 -130650617 - L3 LINE CR1 -195 1382 1120 197 300 56 22 chr4 71677806 71677896 -130650451 + MIR SINE MIR 143 235 -27 480 250 45 11 chr4 71678004 71678180 -130650167 + AluJb SINE Alu 5 186 -126 2105 118 3 0 chr4 71678720 71679009 -130649338 + AluSx SINE Alu 1 290 -22 1667 153 21 3 chr4 71679548 71679836 -130648511 - AluSx SINE Alu -2 310 18 8194 37 3 9 chr4 71680000 71681046 -130647301 + L1P LINE L1 3661 4700 -1446 758 149 0 22 chr4 71681170 71681304 -130647043 - FLAM_C SINE Alu 0 133 3 1196 244 35 0 chr4 71681307 71681619 -130646728 + L1M4 LINE L1 4531 4853 -1293 1891 150 3 0 chr4 71681619 71681919 -130646428 + AluSx SINE Alu 1 301 -11 822 288 34 8 chr4 71681921 71682157 -130646190 + MIR SINE MIR 19 260 -2 415 268 31 16 chr4 71682259 71682386 -130645961 - MER5A DNA MER1_type -27 162 34 2358 84 0 0 chr4 71682566 71682865 -130645482 - AluSg SINE Alu -11 299 1 422 273 91 13 chr4 71682871 71683025 -130645322 - MIR SINE MIR -90 172 7 180 365 77 10 chr4 71683089 71683193 -130645154 - L2 LINE L2 -1016 2298 2188 956 98 0 0 chr4 71683221 71683353 -130644994 - L1PA13 LINE L1 -216 5947 5816 487 130 54 0 chr4 71683353 71683445 -130644902 + L1PA13 LINE L1 6067 6163 0 214 307 53 0 chr4 71683509 71683584 -130644763 - L2 LINE L2 -1238 2076 1998 2163 141 22 11 chr4 71684502 71684864 -130643483 + MER47A DNA MER2_type 1 366 0 182 289 0 39 chr4 71684969 71685021 -130643326 + L3b LINE CR1 1465 1514 -69 207 255 0 0 chr4 71685372 71685419 -130642928 - L2 LINE L2 -6 3266 3220 1884 174 78 18 chr4 71685751 71686302 -130642045 + L1M3 LINE L1 4902 5511 -657 255 31 0 0 chr4 71686302 71686334 -130642013 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1884 174 78 18 chr4 71686334 71686524 -130641823 + L1M3 LINE L1 5511 5688 -480 10510 120 28 13 chr4 71686568 71687549 -130640798 + Tigger2 DNA MER2_type 2 1023 -1695 586 77 39 19 chr4 71687549 71687653 -130640694 - L1PB1 LINE L1 0 6151 6046 10510 120 28 13 chr4 71687653 71688420 -130639927 + Tigger2 DNA MER2_type 1023 1777 -941 2947 146 30 70 chr4 71688417 71689075 -130639272 + Tigger2 DNA MER2_type 2086 2717 -1 * 371 174 0 0 chr4 71689075 71689144 -130639203 + L1MB1 LINE L1 6097 6165 -3 2368 87 3 13 chr4 71689462 71689773 -130638574 + AluSc SINE Alu 1 308 -1 2339 81 0 19 chr4 71689918 71690225 -130638122 - AluY SINE Alu -10 301 1 549 319 152 39 chr4 71690770 71691159 -130637188 + L2 LINE L2 2848 3280 -33 333 230 90 20 chr4 71691173 71691273 -130637074 - MIR SINE MIR -32 230 124 302 323 0 10 chr4 71691908 71692004 -130636343 + L1MC4 LINE L1 6608 6702 -1340 * 317 230 29 0 chr4 71691947 71692050 -130636297 - L1MC4 LINE L1 -1339 6983 1996 198 0 0 0 chr4 71692050 71692072 -130636275 + (CA)n Simple_repeat Simple_repeat 1 22 0 1954 159 3 3 chr4 71692528 71692830 -130635517 - AluSx SINE Alu -7 305 4 1576 331 62 24 chr4 71692888 71693843 -130634504 + L2 LINE L2 2157 3153 -160 213 283 0 0 chr4 71693871 71693917 -130634430 + L2 LINE L2 3235 3280 -33 745 234 24 54 chr4 71693931 71694136 -130634211 - MIR SINE MIR -32 230 32 2229 120 0 0 chr4 71694210 71694519 -130633828 + AluSq SINE Alu 5 313 0 2018 126 0 16 chr4 71695125 71695434 -130632913 - AluJb SINE Alu -8 304 1 183 286 20 0 chr4 71697101 71697150 -130631197 - L2 LINE L2 -2 3311 3262 332 348 23 20 chr4 71697161 71697323 -130631024 - MIR3 SINE MIR -5 203 43 697 153 207 16 chr4 71697762 71698018 -130630329 - LTR54B LTR ERV1 -144 366 16 259 167 0 0 chr4 71698085 71698133 -130630214 + HsTC2 DNA Tc2 1851 1898 0 2501 63 7 0 chr4 71698784 71699083 -130629264 - AluY SINE Alu -2 309 9 1855 227 63 56 chr4 71699130 71699188 -130629159 - LTR65 LTR ERV1 -2 667 611 1917 133 63 28 chr4 71699188 71699550 -130628797 - THE1C LTR MaLR 0 375 1 1855 227 63 56 chr4 71699550 71700031 -130628316 - LTR65 LTR ERV1 -58 611 120 378 0 0 0 chr4 71700031 71700073 -130628274 + (TG)n Simple_repeat Simple_repeat 2 43 0 1855 227 63 56 chr4 71700073 71700194 -130628153 - LTR65 LTR ERV1 -549 120 1 10044 192 50 41 chr4 71700320 71702259 -130626088 - L1MA4 LINE L1 -15 6285 4364 2254 132 36 14 chr4 71702259 71702615 -130625732 - THE1B LTR MaLR 0 364 1 10044 192 50 41 chr4 71702615 71703173 -130625174 - L1MA4 LINE L1 -1936 4364 3812 2214 102 0 0 chr4 71703173 71703457 -130624890 - AluSx SINE Alu -28 284 1 10044 192 50 41 chr4 71703457 71704971 -130623376 - L1MA4 LINE L1 -2488 3812 2299 2363 149 6 3 chr4 71704971 71705334 -130623013 - THE1B LTR MaLR 0 364 1 2117 82 0 3 chr4 71705334 71705626 -130622721 - THE1B-int LTR MaLR 0 1580 1290 1704 210 60 13 chr4 71705626 71706073 -130622274 - MER50 LTR ERV1 -27 707 240 436 317 102 27 chr4 71706226 71706412 -130621935 - MIR3 SINE MIR -8 200 1 937 191 65 6 chr4 71706689 71706959 -130621388 + MLT1A1 LTR MaLR 1 340 -25 215 299 26 13 chr4 71709287 71709364 -130618983 + MIR3 SINE MIR 117 194 -14 1914 133 22 32 chr4 71711015 71711330 -130617017 - AluJo SINE Alu 0 312 1 322 186 0 0 chr4 71713288 71713347 -130615000 + MIR SINE MIR 77 135 -73 228 219 0 0 chr4 71713585 71713647 -130614700 + polypyrimidine Low_complexity Low_complexity 1 62 0 233 118 0 0 chr4 71713854 71713888 -130614459 + MLT1A1 LTR MaLR 340 373 -1 31 68 0 0 chr4 71713990 71714049 -130614298 + AT_rich Low_complexity Low_complexity 1 59 0 24 67 0 0 chr4 71714896 71714941 -130613406 + AT_rich Low_complexity Low_complexity 1 45 0 28 0 0 0 chr4 71715472 71715500 -130612847 + AT_rich Low_complexity Low_complexity 1 28 0 3744 147 13 25 chr4 71716776 71717189 -130611158 + LTR58 LTR ERV1 1 404 -275 3795 108 40 30 chr4 71717189 71717818 -130610529 - MER41B LTR ERV1 0 635 1 3744 147 13 25 chr4 71717818 71718086 -130610261 + LTR58 LTR ERV1 404 674 -5 2470 137 59 88 chr4 71718168 71718759 -130609588 + MER4B LTR ERV1 1 574 -36 4081 110 5 5 chr4 71718998 71719597 -130608750 + LTR9 LTR ERV1 14 612 0 21 82 0 0 chr4 71719853 71719902 -130608445 + AT_rich Low_complexity Low_complexity 1 49 0 1886 134 24 10 chr4 71720173 71720471 -130607876 - AluSx SINE Alu -10 302 1 270 56 0 0 chr4 71722165 71722201 -130606146 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1002 277 121 34 chr4 71722444 71722586 -130605761 + MLT1L LTR MaLR 1 129 -486 3609 121 41 14 chr4 71722586 71723173 -130605174 + LTR26 LTR ERV1 1 603 0 1002 277 121 34 chr4 71723173 71723594 -130604753 + MLT1L LTR MaLR 129 613 -2 314 216 37 6 chr4 71723765 71723927 -130604420 + (TA)n Simple_repeat Simple_repeat 2 168 0 1182 300 43 37 chr4 71724170 71724706 -130603641 - L2 LINE L2 -540 2774 2236 22 0 0 0 chr4 71724706 71724728 -130603619 + AT_rich Low_complexity Low_complexity 1 22 0 304 143 45 0 chr4 71724728 71724840 -130603507 + (TA)n Simple_repeat Simple_repeat 2 118 0 302 323 132 0 chr4 71724890 71725057 -130603290 - L2 LINE L2 -1113 2201 2013 1258 202 35 46 chr4 71725397 71725744 -130602603 + MLT1A2 LTR MaLR 4 346 -28 7098 59 7 2 chr4 71725749 71727055 -130601292 - L1PA6 LINE L1 0 6154 4846 4282 55 9 0 chr4 71727055 71727635 -130600712 + L1PA6 LINE L1 4262 4846 -1300 612 319 56 66 chr4 71727836 71727986 -130600361 - L2 LINE L2 -1326 1988 1838 2297 113 0 0 chr4 71727986 71728287 -130600060 + AluSx SINE Alu 1 301 -11 612 319 56 66 chr4 71728287 71728728 -130599619 - L2 LINE L2 -1476 1838 1403 2009 134 26 3 chr4 71729180 71729486 -130598861 + AluSq SINE Alu 1 313 0 1798 158 17 20 chr4 71729772 71730070 -130598277 + AluJo SINE Alu 2 298 -14 1217 220 59 39 chr4 71730083 71730543 -130597804 - MER69B DNA AcHobo -160 1066 598 1635 234 43 82 chr4 71730568 71731131 -130597216 - MLT1E LTR MaLR 0 593 53 1750 264 61 19 chr4 71731166 71731705 -130596642 - MER69B DNA AcHobo -662 564 3 276 207 122 0 chr4 71732295 71732377 -130595970 + MLT1L LTR MaLR 177 268 -347 21 89 0 0 chr4 71733513 71733569 -130594778 + AT_rich Low_complexity Low_complexity 1 56 0 478 173 110 8 chr4 71733778 71733905 -130594442 - Charlie4 DNA MER1_type -1 1960 1821 357 196 116 9 chr4 71734820 71734932 -130593415 - Charlie4 DNA MER1_type -19 1942 1819 23 0 0 0 chr4 71736367 71736390 -130591957 + AT_rich Low_complexity Low_complexity 1 23 0 6424 83 0 0 chr4 71736581 71737875 -130590472 - L1PB1 LINE L1 0 6151 4859 33 56 0 0 chr4 71738352 71738406 -130589941 + AT_rich Low_complexity Low_complexity 1 54 0 2009 133 17 0 chr4 71738487 71738780 -130589567 - AluSq SINE Alu -15 298 1 373 261 80 72 chr4 71738943 71739081 -130589266 + L2 LINE L2 3118 3256 -16 186 71 0 0 chr4 71739085 71739113 -130589234 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 459 178 8 93 chr4 71739905 71740023 -130588324 + MIR SINE MIR 127 234 -28 3173 215 96 27 chr4 71740785 71740808 -130587539 + L1MC4 LINE L1 6910 6930 -1112 215 31 31 0 chr4 71740808 71740840 -130587507 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 3173 215 96 27 chr4 71740840 71741865 -130586482 + L1MC4 LINE L1 6930 8031 -11 24 53 0 0 chr4 71742244 71742282 -130586065 + AT_rich Low_complexity Low_complexity 1 38 0 187 279 0 0 chr4 71742698 71742741 -130585606 + MIR SINE MIR 30 72 -136 33 25 0 0 chr4 71743119 71743159 -130585188 + AT_rich Low_complexity Low_complexity 1 40 0 639 232 30 24 chr4 71743766 71743930 -130584417 + MIR SINE MIR 98 262 0 647 13 0 0 chr4 71744175 71744250 -130584097 + L1PA4 LINE L1 6073 6147 -8 216 0 0 0 chr4 71744255 71744279 -130584068 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 380 300 29 0 chr4 71744366 71744506 -130583841 + MIR SINE MIR 70 213 -49 493 197 7 15 chr4 71745126 71745263 -130583084 + CT-rich Low_complexity Low_complexity 1 136 0 26 30 0 0 chr4 71745557 71745590 -130582757 + AT_rich Low_complexity Low_complexity 1 33 0 286 333 0 8 chr4 71745655 71745749 -130582598 - MIR SINE MIR -102 106 16 372 57 0 0 chr4 71745941 71745994 -130582353 - L1MA5 LINE L1 -4 6296 6244 217 280 0 80 chr4 71746824 71746899 -130581448 + MIR SINE MIR 118 186 -76 180 111 0 0 chr4 71747433 71747460 -130580887 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 1328 160 4 62 chr4 71747735 71748010 -130580337 - AluJb SINE Alu -13 299 41 460 250 113 48 chr4 71749076 71749244 -130579103 - MIR SINE MIR -66 196 18 256 278 93 37 chr4 71750987 71751095 -130577252 - L2 LINE L2 0 3313 3200 508 131 0 20 chr4 71751724 71751823 -130576524 + (TTCCC)n Simple_repeat Simple_repeat 3 99 0 227 152 0 0 chr4 71751824 71751857 -130576490 + polypyrimidine Low_complexity Low_complexity 4 36 0 775 266 80 0 chr4 71752437 71752609 -130575738 - MIR SINE MIR -4 258 60 2453 111 114 7 chr4 71752609 71753014 -130575333 - MER83 LTR ERV1 0 448 1 775 266 80 0 chr4 71753014 71753078 -130575269 - MIR SINE MIR -202 60 3 2140 103 3 3 chr4 71754327 71754617 -130573730 - AluSg SINE Alu -20 290 1 2221 119 0 0 chr4 71754835 71755129 -130573218 + AluSg SINE Alu 2 295 -15 24 77 0 0 chr4 71755150 71755202 -130573145 + AT_rich Low_complexity Low_complexity 1 52 0 42 57 0 0 chr4 71755318 71755388 -130572959 + AT_rich Low_complexity Low_complexity 1 70 0 979 184 39 19 chr4 71755412 71755618 -130572729 + AluJo SINE Alu 87 296 -16 1521 201 52 63 chr4 71756419 71756881 -130571466 - LTR16A1 LTR ERVL 0 457 1 446 164 48 0 chr4 71758183 71758287 -130570060 - L1MA9 LINE L1 -22 6290 6182 3698 149 49 42 chr4 71758295 71758548 -130569799 - L1MA9 LINE L1 -235 6077 5827 243 0 0 0 chr4 71758548 71758575 -130569772 + (TG)n Simple_repeat Simple_repeat 2 28 0 3698 149 49 42 chr4 71758575 71759458 -130568889 - L1MA9 LINE L1 -485 5827 4935 28 29 0 0 chr4 71759706 71759741 -130568606 + AT_rich Low_complexity Low_complexity 1 35 0 594 230 58 58 chr4 71760253 71760479 -130567868 + MLT1K LTR MaLR 354 579 -9 588 318 146 0 chr4 71760703 71760923 -130567424 + MIR SINE MIR 1 252 -10 477 0 0 0 chr4 71762182 71762235 -130566112 + (CA)n Simple_repeat Simple_repeat 2 54 0 206 368 132 28 chr4 71762245 71762753 -130565594 + L2 LINE L2 573 1133 -2181 1787 135 10 0 chr4 71762889 71763178 -130565169 - L1PA15 LINE L1 -21 6144 5853 4132 173 65 30 chr4 71763421 71764413 -130563934 - L1MA9 LINE L1 -13 6299 5274 205 346 152 34 chr4 71764685 71765191 -130563156 - L2 LINE L2 -1884 1430 865 270 336 55 0 chr4 71765226 71765336 -130563011 + L2 LINE L2 3155 3270 -2 876 267 28 28 chr4 71765471 71765718 -130562629 + MIR SINE MIR 7 253 -9 213 185 15 31 chr4 71766684 71766698 -130561649 + A-rich Low_complexity Low_complexity 2 15 -50 2285 123 0 0 chr4 71766698 71767007 -130561340 + AluSx SINE Alu 4 312 0 213 185 15 31 chr4 71767007 71767057 -130561290 + A-rich Low_complexity Low_complexity 15 65 0 231 321 9 47 chr4 71767449 71767555 -130560792 + L2 LINE L2 3212 3313 0 771 207 121 20 chr4 71768908 71769106 -130559241 + MER20 DNA MER1_type 2 219 0 2327 110 0 7 chr4 71769543 71769853 -130558494 + AluSc SINE Alu 1 308 -1 4330 145 8 6 chr4 71770154 71770863 -130557484 + MER50 LTR ERV1 1 711 -23 838 224 29 0 chr4 71770856 71771026 -130557321 + MER20 DNA MER1_type 45 219 0 * 26 30 0 0 chr4 71771190 71771223 -130557124 + AT_rich Low_complexity Low_complexity 1 33 0 386 287 230 19 chr4 71772696 71772905 -130555442 - MIR SINE MIR -2 260 8 1553 120 142 11 chr4 71773566 71773833 -130554514 - AluSg1 SINE Alu -7 302 1 2210 69 0 31 chr4 71773943 71774259 -130554088 - AluY SINE Alu 0 307 1 240 290 29 0 chr4 71774476 71774545 -130553802 + LTR16C LTR ERVL 421 491 0 2115 60 0 0 chr4 71776311 71776562 -130551785 + AluSc SINE Alu 55 305 -4 651 191 114 68 chr4 71776658 71776878 -130551469 + L1MC4 LINE L1 6751 6980 -1062 1793 144 4 7 chr4 71776943 71777214 -130551133 + AluSq SINE Alu 1 270 -43 1700 165 10 10 chr4 71777771 71778062 -130550285 + AluJo SINE Alu 5 295 -17 303 299 0 12 chr4 71780481 71780629 -130547718 - AluSc SINE Alu -55 244 134 268 359 0 0 chr4 71786128 71786220 -130542127 + L2 LINE L2 3194 3285 -28 1669 187 3 23 chr4 71786454 71786753 -130541594 + AluJo SINE Alu 1 293 -19 559 252 50 54 chr4 71786796 71787018 -130541329 + MER58A DNA MER1_type 1 221 -3 223 283 0 0 chr4 71787724 71787784 -130540563 - L2 LINE L2 -54 3259 3200 2202 101 3 0 chr4 71787787 71788075 -130540272 - AluSg1 SINE Alu -20 289 1 1718 111 4 16 chr4 71788885 71789137 -130539210 - AluSx SINE Alu -21 291 43 1095 307 56 59 chr4 71789183 71789818 -130538529 - L2 LINE L2 -5 3308 2665 411 300 94 22 chr4 71790287 71790467 -130537880 - L2 LINE L2 -307 3006 2814 193 311 0 0 chr4 71790464 71790509 -130537838 + L2 LINE L2 3137 3181 -91 * 243 276 200 52 chr4 71790541 71790751 -130537596 - MIR SINE MIR -7 255 15 895 135 0 0 chr4 71791133 71791266 -130537081 + AluSg/x SINE Alu 174 306 -6 21 82 0 0 chr4 71791534 71791583 -130536764 + AT_rich Low_complexity Low_complexity 1 49 0 2276 167 2 35 chr4 71791839 71792325 -130536022 - LTR9 LTR ERV1 0 612 143 482 234 39 13 chr4 71792638 71792792 -130535555 + MLT1B LTR MaLR 205 362 -28 7045 61 8 26 chr4 71792797 71794076 -130534271 - L1PA6 LINE L1 0 6154 4886 2267 114 0 0 chr4 71795084 71795383 -130532964 - AluSg SINE Alu -11 299 1 3912 108 48 3 chr4 71795868 71796452 -130531895 + MER4B LTR ERV1 1 610 0 776 182 0 0 chr4 71797345 71797477 -130530870 - FLAM_C SINE Alu -1 132 1 26 50 0 0 chr4 71797679 71797719 -130530628 + AT_rich Low_complexity Low_complexity 1 40 0 1661 135 4 0 chr4 71798939 71799184 -130529163 + AluSq SINE Alu 1 246 -67 2481 43 3 7 chr4 71799199 71799503 -130528844 + AluY SINE Alu 1 303 -8 667 158 30 0 chr4 71799503 71799636 -130528711 - L1M4 LINE L1 -866 5280 5144 1776 217 67 14 chr4 71799679 71800113 -130528234 - L1MDa LINE L1 -6066 474 18 412 364 88 26 chr4 71800442 71800747 -130527600 + L2 LINE L2 2423 2746 -568 226 157 0 78 chr4 71801017 71801051 -130527296 - MLT2D LTR ERVL 0 414 384 1783 163 20 16 chr4 71801051 71801357 -130526990 + AluJb SINE Alu 1 307 -5 226 157 0 78 chr4 71801357 71801373 -130526974 - MLT2D LTR ERVL -30 384 368 1607 196 122 41 chr4 71801406 71801420 -130526927 - MLT2B1 LTR ERVL -41 479 468 1591 153 4 23 chr4 71801420 71801681 -130526666 - AluSx SINE Alu -22 290 35 1607 196 122 41 chr4 71801681 71802109 -130526238 - MLT2B1 LTR ERVL -52 468 1 2020 124 0 51 chr4 71802741 71803056 -130525291 + AluSx SINE Alu 1 299 -13 261 0 0 0 chr4 71803405 71803434 -130524913 + (TA)n Simple_repeat Simple_repeat 2 30 0 1571 192 16 35 chr4 71803503 71803820 -130524527 - AluJo SINE Alu -1 311 1 24 41 0 20 chr4 71804101 71804113 -130524234 + AT_rich Low_complexity Low_complexity 1 12 -36 1887 155 134 11 chr4 71804113 71804494 -130523853 - MSTA LTR MaLR 0 428 1 24 41 0 20 chr4 71804494 71804530 -130523817 + AT_rich Low_complexity Low_complexity 12 48 0 546 277 7 0 chr4 71806080 71806228 -130522119 + MER105 DNA DNA 1 149 -55 369 266 85 11 chr4 71806336 71806430 -130521917 - L2 LINE L2 0 3272 3172 4287 155 30 10 chr4 71806556 71806911 -130521436 + L1MA8 LINE L1 4967 5313 -978 4287 154 24 11 chr4 71806911 71807016 -130521331 + L1MA8 LINE L1 5477 5579 -712 2775 10 3 0 chr4 71807016 71807324 -130521023 + AluYb8 SINE Alu 1 309 -9 4287 154 24 11 chr4 71807324 71808016 -130520331 + L1MA8 LINE L1 5579 6285 -6 4287 155 30 10 chr4 71808016 71808031 -130520316 + L1MA8 LINE L1 5313 6285 -6 34 55 0 0 chr4 71808448 71808503 -130519844 + AT_rich Low_complexity Low_complexity 1 55 0 1827 128 0 8 chr4 71808633 71808890 -130519457 + AluSx SINE Alu 38 292 -20 383 385 41 6 chr4 71808963 71809132 -130519215 + MIR3 SINE MIR 6 180 -28 1849 120 0 81 chr4 71809324 71809656 -130518691 - AluSx SINE Alu 0 307 1 1618 164 73 28 chr4 71809955 71810241 -130518106 - AluJo SINE Alu -13 299 1 465 19 0 0 chr4 71810496 71810550 -130517797 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 330 287 7 87 chr4 71810564 71810714 -130517633 - MIR SINE MIR -8 254 117 264 167 0 0 chr4 71810965 71811013 -130517334 + (TG)n Simple_repeat Simple_repeat 1 48 0 183 358 74 11 chr4 71811013 71811108 -130517239 - L2 LINE L2 -1504 1810 1710 2815 253 27 13 chr4 71811437 71812445 -130515902 - L1M4 LINE L1 -3015 3131 2110 236 321 12 12 chr4 71812739 71812820 -130515527 - L2 LINE L2 -4 3268 3188 2116 164 32 3 chr4 71812895 71813272 -130515075 - MLT1B LTR MaLR 0 390 3 54 29 0 0 chr4 71813272 71813340 -130515007 + AT_rich Low_complexity Low_complexity 1 68 0 233 330 21 11 chr4 71814309 71814403 -130513944 - MIR3 SINE MIR 0 208 114 261 234 28 37 chr4 71814784 71814891 -130513456 + (CATATA)n Simple_repeat Simple_repeat 3 108 0 24 0 0 0 chr4 71815385 71815409 -130512938 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 71815582 71815603 -130512744 + AT_rich Low_complexity Low_complexity 1 21 0 5236 117 9 0 chr4 71816081 71816895 -130511452 + L1PA14 LINE L1 5330 6150 -11 1497 98 0 15 chr4 71817773 71817977 -130510370 - AluSg/x SINE Alu -5 305 105 291 93 0 0 chr4 71819104 71819147 -130509200 + (TG)n Simple_repeat Simple_repeat 2 44 0 279 350 203 14 chr4 71819151 71819505 -130508842 - L2 LINE L2 -437 2877 2457 477 316 64 47 chr4 71819516 71819750 -130508597 + L3 LINE CR1 436 673 -904 193 250 167 0 chr4 71819788 71819860 -130508487 + L3 LINE CR1 1224 1307 -270 2057 136 10 13 chr4 71819963 71820271 -130508076 - AluSx SINE Alu -5 307 1 2124 122 10 13 chr4 71820488 71820799 -130507548 + AluSx SINE Alu 1 310 -2 2251 103 7 7 chr4 71822185 71822495 -130505852 + AluSg SINE Alu 1 310 0 27 0 0 0 chr4 71822697 71822724 -130505623 + AT_rich Low_complexity Low_complexity 1 27 0 6500 156 15 4 chr4 71823987 71825114 -130503233 + L1PA8A LINE L1 1 1139 -4736 23749 135 9 42 chr4 71825115 71825776 -130502571 + L1PA8A LINE L1 1180 1861 -4585 1926 106 99 0 chr4 71825776 71826049 -130502298 + AluSg SINE Alu 1 300 -10 23749 135 9 42 chr4 71826049 71830619 -130497728 + L1PA8A LINE L1 1861 6230 -216 953 255 135 10 chr4 71830663 71831168 -130497179 - L1ME LINE L1 -348 5822 5255 22 0 0 0 chr4 71831170 71831192 -130497155 + AT_rich Low_complexity Low_complexity 1 22 0 1704 194 57 45 chr4 71831204 71831423 -130496924 + MER34 LTR ERV1 27 242 -300 1919 157 0 0 chr4 71831423 71831709 -130496638 + AluSx SINE Alu 23 308 -4 1704 194 57 45 chr4 71831709 71831817 -130496530 + MER34 LTR ERV1 242 347 -195 2353 53 0 0 chr4 71831817 71832098 -130496249 - AluY SINE Alu -30 281 1 1704 194 57 45 chr4 71832098 71832279 -130496068 + MER34 LTR ERV1 347 542 0 442 254 42 97 chr4 71832280 71832497 -130495850 - L1ME LINE L1 -913 5233 5029 241 243 40 0 chr4 71832498 71832572 -130495775 + L2 LINE L2 1821 1897 -1417 1391 312 119 16 chr4 71832573 71833262 -130495085 + L2 LINE L2 2236 2995 -318 224 271 17 0 chr4 71833260 71833319 -130495028 + L2 LINE L2 3254 3313 0 * 1136 186 42 17 chr4 71833405 71833641 -130494706 - L1PB4 LINE L1 -7 6149 5908 274 299 15 90 chr4 71833944 71834078 -130494269 - L3 LINE CR1 -11 1566 1443 1112 160 0 11 chr4 71834152 71834327 -130494020 + FAM SINE Alu 1 173 -2 237 369 82 0 chr4 71834774 71834896 -130493451 + L2 LINE L2 3136 3267 -5 234 245 0 0 chr4 71836150 71836199 -130492148 + GA-rich Low_complexity Low_complexity 1 49 0 196 30 61 0 chr4 71837852 71837885 -130490462 + T-rich Low_complexity Low_complexity 1 35 0 281 261 172 37 chr4 71837921 71838055 -130490292 + L2 LINE L2 3162 3313 0 440 258 58 25 chr4 71838282 71838402 -130489945 + MIR SINE MIR 9 132 -130 196 238 16 79 chr4 71838428 71838491 -130489856 + MIR SINE MIR 204 262 0 21 0 0 0 chr4 71839849 71839870 -130488477 + AT_rich Low_complexity Low_complexity 1 21 0 35 63 0 0 chr4 71840093 71840156 -130488191 + AT_rich Low_complexity Low_complexity 1 63 0 207 280 48 56 chr4 71840259 71840384 -130487963 - MIR SINE MIR -52 210 87 1174 186 13 30 chr4 71841561 71841797 -130486550 + AluJo SINE Alu 29 260 -52 222 37 0 0 chr4 71841815 71841842 -130486505 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 207 0 0 0 chr4 71842930 71842953 -130485394 + (TG)n Simple_repeat Simple_repeat 1 23 0 203 243 0 14 chr4 71842954 71842976 -130485371 + (TA)n Simple_repeat Simple_repeat 1 22 -51 7947 123 26 16 chr4 71842976 71844262 -130484085 + HSMAR2 DNA Mariner 4 1301 -1 203 243 0 14 chr4 71844262 71844313 -130484034 + (TA)n Simple_repeat Simple_repeat 22 73 0 310 271 59 17 chr4 71844340 71844458 -130483889 + L1MC/D LINE L1 5038 5160 -986 350 283 90 30 chr4 71844535 71844835 -130483512 + L1MC/D LINE L1 5262 5542 -622 282 231 51 13 chr4 71845569 71845647 -130482700 + CT-rich Low_complexity Low_complexity 1 81 0 435 333 80 4 chr4 71845647 71845884 -130482463 + MIR SINE MIR 8 262 0 228 356 68 17 chr4 71845898 71846016 -130482331 - L2 LINE L2 -9 3304 3181 333 293 79 49 chr4 71847458 71847622 -130480725 + L2 LINE L2 3104 3272 0 333 232 0 0 chr4 71848641 71848710 -130479637 + MER5A DNA MER1_type 14 82 -107 373 296 16 86 chr4 71850077 71850263 -130478084 + MER5A DNA MER1_type 7 179 -10 265 388 99 31 chr4 71850435 71850757 -130477590 - L2 LINE L2 -49 3223 2880 326 315 185 30 chr4 71850847 71851241 -130477106 + L2 LINE L2 2289 2743 -571 388 315 158 16 chr4 71851458 71851642 -130476705 + MIR SINE MIR 40 249 -13 217 322 56 117 chr4 71851704 71852064 -130476283 + L2 LINE L2 2888 3225 -47 300 310 61 41 chr4 71852511 71852708 -130475639 - L2 LINE L2 -1 3312 3112 422 228 198 74 chr4 71853474 71853636 -130474711 + MIR SINE MIR 81 262 0 186 269 0 64 chr4 71853974 71854052 -130474295 + L2 LINE L2 2012 2084 -1230 251 375 83 0 chr4 71854069 71854213 -130474134 - L2 LINE L2 0 3272 3117 541 272 6 18 chr4 71854213 71854382 -130473965 + L1MEd LINE L1 4 170 -5949 469 373 16 40 chr4 71854412 71854715 -130473632 + L1MEd LINE L1 245 540 -5579 1305 32 0 0 chr4 71854728 71854885 -130473462 - L1PA4 LINE L1 -3 6152 5996 956 156 66 12 chr4 71855049 71855336 -130473011 - THE1C LTR MaLR 0 375 1 1667 86 0 0 chr4 71855484 71855716 -130472631 + L1MA2 LINE L1 6073 6304 0 501 220 99 0 chr4 71855748 71855930 -130472417 + L1MEd LINE L1 893 1092 -5027 838 320 74 14 chr4 71856013 71856497 -130471850 - L2 LINE L2 -997 2317 1805 275 234 16 31 chr4 71856923 71856987 -130471360 - MER117 DNA MER1_type 0 197 135 249 333 54 11 chr4 71857104 71857197 -130471150 - MER91C DNA MER1_type -31 109 13 180 0 0 0 chr4 71857999 71858019 -130470328 + (T)n Simple_repeat Simple_repeat 1 20 0 417 198 12 0 chr4 71858077 71858163 -130470184 - FLAM_A SINE Alu -9 133 47 1346 152 130 7 chr4 71858165 71858441 -130469906 + L1MA3 LINE L1 5996 6305 0 342 246 0 0 chr4 71858459 71858520 -130469827 - FRAM/FAM SINE Alu -105 61 1 2147 113 0 0 chr4 71858536 71858828 -130469519 + AluY SINE Alu 1 292 -19 396 248 129 55 chr4 71859308 71859386 -130468961 - HAL1b LINE L1 0 1348 1277 2059 139 0 16 chr4 71859386 71859696 -130468651 + AluSx SINE Alu 1 305 -7 396 248 129 55 chr4 71859696 71859928 -130468419 - HAL1b LINE L1 -71 1277 1015 186 304 0 0 chr4 71860326 71860372 -130467975 + MIR SINE MIR 105 150 -112 1641 225 171 50 chr4 71861078 71861806 -130466541 - Charlie7 DNA MER1_type -1 2611 1768 2105 113 7 0 chr4 71861806 71862099 -130466248 - AluSx SINE Alu -17 295 1 1641 225 171 50 chr4 71862099 71862207 -130466140 - Charlie7 DNA MER1_type -844 1768 1674 748 248 68 115 chr4 71862197 71862770 -130465577 - Charlie7 DNA MER1_type -2066 546 1 * 264 211 53 0 chr4 71862832 71862889 -130465458 - L2 LINE L2 0 3313 3254 1189 346 73 35 chr4 71863265 71864474 -130463873 - L2 LINE L2 0 3272 2022 395 302 0 0 chr4 71864490 71864606 -130463741 - MIR3 SINE MIR -1 207 92 212 366 27 9 chr4 71864718 71864830 -130463517 + MIR SINE MIR 29 142 -120 734 204 95 0 chr4 71865166 71865313 -130463034 + MLT1A1 LTR MaLR 197 357 -8 209 349 112 12 chr4 71866577 71866746 -130461601 + L2 LINE L2 2343 2528 -786 446 271 93 0 chr4 71866950 71867101 -130461246 + LTR16A LTR ERVL 286 450 0 734 183 117 0 chr4 71867254 71867391 -130460956 - MER5A DNA MER1_type -36 153 1 185 326 167 29 chr4 71867676 71867814 -130460533 - L2 LINE L2 -5 3308 3152 199 336 37 65 chr4 71868108 71868215 -130460132 - L2 LINE L2 -633 2681 2578 210 280 0 0 chr4 71868268 71868318 -130460029 + MER5A DNA MER1_type 140 189 0 9458 155 40 12 chr4 71869618 71869870 -130458477 + L1MA4A LINE L1 3443 3687 -2616 2285 97 7 0 chr4 71869870 71870168 -130458179 + AluSg SINE Alu 1 300 -10 9458 155 40 12 chr4 71870168 71872167 -130456180 + L1MA4A LINE L1 3687 5629 -674 468 0 0 0 chr4 71872167 71872219 -130456128 + (TA)n Simple_repeat Simple_repeat 1 52 0 258 32 0 0 chr4 71872218 71872249 -130456098 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 9458 155 40 12 chr4 71872219 71872363 -130455984 + L1MA4A LINE L1 5629 5768 -535 662 138 0 101 chr4 71872363 71872501 -130455846 + FLAM_C SINE Alu 2 125 -8 9458 155 40 12 chr4 71872501 71872909 -130455438 + L1MA4A LINE L1 5768 6303 0 21 0 0 0 chr4 71873832 71873853 -130454494 + AT_rich Low_complexity Low_complexity 1 21 0 400 235 111 56 chr4 71875230 71875392 -130452955 + MIR SINE MIR 25 195 -67 216 353 8 59 chr4 71875435 71875554 -130452793 + L2 LINE L2 3147 3259 -13 304 291 148 26 chr4 71877069 71877258 -130451089 - MIR SINE MIR -11 251 40 289 291 45 18 chr4 71877415 71877525 -130450822 + L2 LINE L2 2241 2353 -961 3435 31 26 0 chr4 71877525 71877948 -130450399 + L1PA5 LINE L1 5715 6148 -6 39 0 0 0 chr4 71877948 71877987 -130450360 + AT_rich Low_complexity Low_complexity 1 39 0 245 297 0 27 chr4 71878074 71878148 -130450199 + MIR SINE MIR 191 262 0 210 71 0 0 chr4 71878224 71878252 -130450095 + (A)n Simple_repeat Simple_repeat 1 28 0 231 355 59 41 chr4 71878532 71878701 -130449646 + MIR SINE MIR 33 204 -58 230 358 42 17 chr4 71878785 71878905 -130449442 + MIR SINE MIR 66 188 -74 41 36 0 0 chr4 71878966 71879021 -130449326 + AT_rich Low_complexity Low_complexity 1 55 0 13587 187 36 11 chr4 71879262 71883345 -130445002 + L1PB4 LINE L1 2572 6851 -7 201 314 49 29 chr4 71883383 71883485 -130444862 - L2 LINE L2 -229 3043 2940 1158 295 12 23 chr4 71885155 71885428 -130442919 + L2 LINE L2 2809 3077 -236 2441 57 0 0 chr4 71885428 71885727 -130442620 + AluY SINE Alu 1 299 -12 1158 295 12 23 chr4 71885727 71885880 -130442467 + L2 LINE L2 3077 3230 -83 241 222 32 0 chr4 71887164 71887227 -130441120 + CT-rich Low_complexity Low_complexity 4 68 0 588 209 7 0 chr4 71887384 71887523 -130440824 + L1MB7 LINE L1 6036 6175 -9 432 269 32 0 chr4 71888559 71888652 -130439695 - MER5A DNA MER1_type -83 106 11 1992 157 36 3 chr4 71888852 71889189 -130439158 + MER7A DNA MER2_type 1 346 0 706 284 80 10 chr4 71890498 71890699 -130437648 + MIR SINE MIR 14 228 -34 192 214 48 0 chr4 71890734 71890776 -130437571 + L2 LINE L2 3207 3250 -63 505 228 71 8 chr4 71891093 71891220 -130437127 + MIR SINE MIR 81 215 -47 37 62 0 0 chr4 71891285 71891350 -130436997 + AT_rich Low_complexity Low_complexity 1 65 0 242 149 21 0 chr4 71891350 71891397 -130436950 - L1MA9 LINE L1 -22 6290 6243 286 363 178 6 chr4 71891436 71891593 -130436754 - MIR3 SINE MIR -6 202 19 244 261 82 22 chr4 71891785 71891919 -130436428 + L2 LINE L2 1944 2085 -1229 273 198 95 48 chr4 71891926 71892052 -130436295 + L1MC5 LINE L1 7794 7925 -36 270 239 196 14 chr4 71892066 71892187 -130436160 + L2 LINE L2 2079 2224 -1090 434 309 31 57 chr4 71892187 71892381 -130435966 - MER5A DNA MER1_type 0 189 1 502 322 74 76 chr4 71892390 71892825 -130435522 + L2 LINE L2 2267 2700 -614 647 67 0 0 chr4 71892827 71892916 -130435431 + L1PA8 LINE L1 6083 6171 -1 250 402 0 0 chr4 71893022 71893104 -130435243 + L2 LINE L2 2973 3054 -259 410 227 113 44 chr4 71893313 71893516 -130434831 + L2 LINE L2 3097 3313 0 2224 94 0 7 chr4 71893539 71893827 -130434520 + AluSg SINE Alu 1 286 -24 636 302 182 6 chr4 71894014 71894095 -130434252 - L2 LINE L2 -1079 2235 2170 2287 68 34 3 chr4 71894095 71894390 -130433957 + AluY SINE Alu 1 304 -7 636 302 182 6 chr4 71894390 71894659 -130433688 - L2 LINE L2 -1144 2170 1823 368 319 129 5 chr4 71894659 71894869 -130433478 + L1ME LINE L1 5589 5736 -434 22 0 0 0 chr4 71895174 71895196 -130433151 + AT_rich Low_complexity Low_complexity 1 22 0 514 253 45 40 chr4 71895201 71895403 -130432944 - L2 LINE L2 -1480 1834 1632 766 177 51 44 chr4 71895527 71895685 -130432662 - FRAM SINE Alu -14 162 4 296 348 39 45 chr4 71899692 71899847 -130428500 + MIR3 SINE MIR 50 203 -5 24 67 0 0 chr4 71900059 71900104 -130428243 + AT_rich Low_complexity Low_complexity 1 45 0 331 303 73 83 chr4 71900256 71900570 -130427777 - L1ME4a LINE L1 -217 5904 5594 21 57 0 0 chr4 71901629 71901664 -130426683 + AT_rich Low_complexity Low_complexity 1 35 0 291 256 45 131 chr4 71901814 71902013 -130426334 + MIR SINE MIR 31 212 -50 309 26 0 0 chr4 71902053 71902091 -130426256 + (TG)n Simple_repeat Simple_repeat 2 39 0 4375 25 0 0 chr4 71902390 71902910 -130425437 - L1PA2 LINE L1 -1384 4762 4243 7876 12 0 0 chr4 71902910 71904295 -130424052 + L1PA2 LINE L1 4768 6152 -3 195 167 0 0 chr4 71904299 71904341 -130424006 + A-rich Low_complexity Low_complexity 1 42 0 456 339 63 55 chr4 71904644 71905007 -130423340 + L2 LINE L2 1217 1582 -1732 633 331 135 28 chr4 71905011 71905552 -130422795 + L2 LINE L2 2376 2974 -340 1839 185 0 0 chr4 71905708 71906011 -130422336 - AluJo SINE Alu -9 303 1 38 61 0 0 chr4 71906123 71906189 -130422158 + AT_rich Low_complexity Low_complexity 1 66 0 465 348 58 25 chr4 71906265 71906342 -130422005 + LTR16A LTR ERVL 6 79 -385 2332 187 87 15 chr4 71906342 71906860 -130421487 - MER74A LTR ERVL -3 555 1 465 348 58 25 chr4 71906860 71907175 -130421172 + LTR16A LTR ERVL 79 440 -24 2812 316 46 19 chr4 71907280 71908443 -130419904 + HERV16 LTR ERVL 102 1295 -3701 663 350 25 7 chr4 71908576 71908862 -130419485 + HERVL LTR ERVL 4106 4396 -1258 2317 68 0 3 chr4 71908979 71909273 -130419074 - AluY SINE Alu -18 293 1 4705 122 153 21 chr4 71910636 71912018 -130416329 - pTR5 LTR ERV1 0 2438 745 569 239 0 29 chr4 71912538 71912676 -130415671 - MLT1E2 LTR MaLR -441 185 52 2120 104 7 0 chr4 71913552 71913887 -130414460 + AluSc SINE Alu 1 337 0 2062 170 8 11 chr4 71913887 71914263 -130414084 - L1MC1 LINE L1 -7 6326 5952 1145 155 68 48 chr4 71914290 71914476 -130413871 - L1MC1 LINE L1 -534 5799 5605 2375 92 0 0 chr4 71914476 71914770 -130413577 + AluSg SINE Alu 1 294 -16 1145 155 68 48 chr4 71914770 71914835 -130413512 - L1MC1 LINE L1 -728 5605 5543 2308 104 0 0 chr4 71916359 71916658 -130411689 - AluSq SINE Alu -14 299 1 13492 151 12 20 chr4 71916660 71917385 -130410962 - L1M1 LINE L1 -520 7203 6473 1957 147 0 25 chr4 71917385 71917699 -130410648 + AluSx SINE Alu 3 308 -4 13492 151 12 20 chr4 71917699 71920022 -130408325 - L1M1 LINE L1 -1250 6473 4184 18576 164 30 7 chr4 71920042 71923268 -130405079 - L1M1 LINE L1 -4227 3338 38 531 91 11 11 chr4 71923428 71923516 -130404831 + L1PB4 LINE L1 6068 6155 -1 591 215 16 99 chr4 71923553 71923795 -130404552 - MER112 DNA MER1_type -19 241 20 994 208 59 10 chr4 71924094 71924296 -130404051 + MER20 DNA MER1_type 2 213 -6 186 296 37 12 chr4 71924806 71924887 -130403460 + MIR3 SINE MIR 120 202 -6 2013 276 120 43 chr4 71926713 71927294 -130401053 - HAL1 LINE L1 -1 2506 1972 393 75 0 0 chr4 71927294 71927347 -130401000 + (CA)n Simple_repeat Simple_repeat 2 54 0 2013 276 120 43 chr4 71927347 71928077 -130400270 - HAL1 LINE L1 -535 1972 1093 726 123 0 18 chr4 71928186 71928300 -130400047 + MSTD LTR MaLR 1 112 -284 211 150 33 33 chr4 71930179 71930239 -130398108 + (TA)n Simple_repeat Simple_repeat 2 61 0 1209 193 123 18 chr4 71930415 71930952 -130397395 + MLT1E1 LTR MaLR 3 654 0 482 188 51 65 chr4 71930952 71931090 -130397257 - L1MA8 LINE L1 -178 6113 5978 647 219 26 26 chr4 71931102 71931294 -130397053 + L1MA8 LINE L1 6100 6291 0 279 0 0 0 chr4 71931485 71931516 -130396831 + (CA)n Simple_repeat Simple_repeat 2 32 0 2478 62 0 3 chr4 71931563 71931867 -130396480 + AluY SINE Alu 7 309 -2 1113 252 84 2 chr4 71932071 71932547 -130395800 - L1MCa LINE L1 -2923 3503 2989 386 261 48 120 chr4 71933591 71933882 -130394465 + MLT1K LTR MaLR 319 588 0 571 279 49 20 chr4 71934500 71934704 -130393643 - L2 LINE L2 0 3313 3104 575 364 44 4 chr4 71934839 71935114 -130393233 - L2 LINE L2 -434 2880 2595 203 361 24 0 chr4 71935211 71935294 -130393053 - MIR3 SINE MIR -41 167 83 354 302 43 17 chr4 71935399 71935515 -130392832 + L3 LINE CR1 1048 1166 -411 207 0 0 0 chr4 71935540 71935563 -130392784 + (TA)n Simple_repeat Simple_repeat 1 23 0 238 191 48 0 chr4 71935567 71935630 -130392717 - L1MCa LINE L1 -4355 2071 2006 * 1310 123 13 3 chr4 71935625 71935647 -130392700 + L1PA12 LINE L1 5681 5701 -467 1098 43 7 0 chr4 71935647 71935788 -130392559 - L1PA13 LINE L1 -12 6151 6010 1310 123 13 3 chr4 71935788 71935999 -130392348 + L1PA12 LINE L1 5701 5887 -281 284 364 27 32 chr4 71936051 71936238 -130392109 + L3 LINE CR1 1262 1447 -130 21 0 0 0 chr4 71936333 71936354 -130391993 + AT_rich Low_complexity Low_complexity 1 21 0 1564 174 95 0 chr4 71936357 71936621 -130391726 - AluJo SINE Alu -23 289 1 327 345 158 15 chr4 71938007 71938349 -130389998 + L2 LINE L2 2922 3312 -1 1721 109 0 13 chr4 71938520 71938758 -130389589 - AluSg/x SINE Alu -13 299 65 2039 113 65 40 chr4 71939540 71939893 -130388454 - THE1B LTR MaLR 0 364 3 434 148 74 0 chr4 71940245 71940326 -130388021 + L1MA9 LINE L1 6226 6312 0 4578 186 18 27 chr4 71941739 71942726 -130385621 + MER52A LTR ERV1 793 1751 -4 184 281 83 83 chr4 71942959 71943053 -130385294 - MIR SINE MIR -66 142 46 2253 95 0 10 chr4 71943053 71943358 -130384989 - AluSx SINE Alu -10 302 1 184 281 83 83 chr4 71943358 71943384 -130384963 - MIR SINE MIR -161 47 22 859 321 83 20 chr4 71945309 71945708 -130382639 - L3 LINE CR1 -3 1574 1151 189 0 0 0 chr4 71945821 71945842 -130382505 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr4 71947102 71947123 -130381224 + AT_rich Low_complexity Low_complexity 1 21 0 515 268 25 38 chr4 71947195 71947352 -130380995 - MER5B DNA MER1_type -2 176 22 361 286 64 46 chr4 71947449 71947613 -130380734 + MIR SINE MIR 7 188 -52 225 0 0 0 chr4 71948117 71948142 -130380205 + (CA)n Simple_repeat Simple_repeat 2 26 0 306 323 70 13 chr4 71948235 71948419 -130379928 - MIR SINE MIR -61 201 2 182 301 238 42 chr4 71949095 71949238 -130379109 - MER5A DNA MER1_type -12 177 7 194 422 47 8 chr4 71950571 71950699 -130377648 + L2 LINE L2 3140 3272 0 311 291 254 0 chr4 71950955 71951120 -130377227 - MIR SINE MIR -30 232 26 264 313 147 20 chr4 71952548 71952698 -130375649 + MIR SINE MIR 1 169 -93 9240 188 12 26 chr4 71952699 71952765 -130375582 - L1PA16 LINE L1 -309 5857 5792 189 74 0 0 chr4 71952765 71952792 -130375555 + (TA)n Simple_repeat Simple_repeat 2 28 0 9240 188 12 26 chr4 71952792 71954712 -130373635 - L1PA16 LINE L1 -374 5792 3914 2200 118 0 0 chr4 71954712 71955001 -130373346 - AluSx SINE Alu -23 289 1 9240 188 12 26 chr4 71955001 71955668 -130372679 - L1PA16 LINE L1 -2252 3914 3239 1769 212 15 6 chr4 71955674 71956014 -130372333 + MER72 LTR ERV1 310 652 -70 401 324 89 29 chr4 71956649 71956930 -130371417 + L1ME LINE L1 4885 5182 -964 756 322 8 31 chr4 71956995 71957238 -130371109 + L1ME LINE L1 5258 5490 -672 1623 185 56 34 chr4 71957238 71957595 -130370752 + MLT1A1 LTR MaLR 1 365 0 756 322 8 31 chr4 71957595 71957739 -130370608 + L1ME LINE L1 5490 5636 -526 247 201 174 132 chr4 71959305 71959449 -130368898 + MER5A DNA MER1_type 37 186 -3 * 315 265 193 0 chr4 71959377 71959460 -130368887 - MER5A DNA MER1_type -84 105 7 862 296 73 0 chr4 71959804 71960037 -130368310 - MIR SINE MIR -1 261 12 276 417 8 0 chr4 71961204 71961324 -130367023 + L2 LINE L2 3150 3270 -2 869 245 74 55 chr4 71961981 71962660 -130365687 - L1MC5 LINE L1 -26 7935 7262 181 373 118 0 chr4 71962761 71962863 -130365484 + L2 LINE L2 3128 3241 -31 2393 76 0 25 chr4 71963152 71963468 -130364879 - AluY SINE Alu -1 310 3 348 355 80 7 chr4 71963793 71963931 -130364416 - MIR3 SINE MIR -28 180 33 200 254 30 15 chr4 71963993 71964060 -130364287 + (TTCA)n Simple_repeat Simple_repeat 4 71 0 1994 147 7 0 chr4 71964591 71964877 -130363470 + AluSx SINE Alu 3 290 -22 3181 183 42 3 chr4 71965058 71965659 -130362688 - MLT1E3 LTR MaLR 0 624 1 296 301 159 31 chr4 71967102 71967328 -130361019 - MIR SINE MIR -6 256 2 2278 148 6 0 chr4 71967934 71968271 -130360076 - MER1B DNA MER1_type 0 339 1 2166 107 14 0 chr4 71968529 71968820 -130359527 + AluSp SINE Alu 1 295 -18 813 301 53 4 chr4 71969728 71969974 -130358373 + MIR SINE MIR 4 261 -1 192 125 0 0 chr4 71970654 71970686 -130357661 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 211 337 54 22 chr4 71970709 71970801 -130357546 - L2 LINE L2 -20 3293 3199 284 325 40 8 chr4 71970997 71971123 -130357224 + MIR SINE MIR 32 161 -101 290 269 160 51 chr4 71971204 71971360 -130356987 - MIR SINE MIR -70 192 20 205 313 121 16 chr4 71971502 71971688 -130356659 + MIR SINE MIR 34 259 -3 2326 124 30 28 chr4 71971834 71972197 -130356150 + THE1B LTR MaLR 1 364 0 11366 105 8 0 chr4 71972197 71973742 -130354605 + THE1B-int LTR MaLR 1 1557 -23 413 327 34 44 chr4 71973929 71974152 -130354195 - MIR SINE MIR -34 228 10 1973 181 42 0 chr4 71975144 71975475 -130352872 + THE1B LTR MaLR 20 364 0 4797 124 93 6 chr4 71975628 71976673 -130351674 + L1PA16 LINE L1 5043 6164 -2 457 278 158 34 chr4 71976736 71976945 -130351402 + MIR SINE MIR 7 241 -21 338 323 78 31 chr4 71977801 71978095 -130350252 + L2 LINE L2 1644 1951 -1363 745 157 29 30 chr4 71978229 71978410 -130349937 + L1MC/D LINE L1 5516 5699 -643 24 67 0 0 chr4 71978928 71978973 -130349374 + AT_rich Low_complexity Low_complexity 1 45 0 262 378 18 0 chr4 71979043 71979154 -130349193 + MIR SINE MIR 25 137 -125 238 257 9 62 chr4 71979883 71979996 -130348351 + MIR SINE MIR 106 212 -50 219 275 127 24 chr4 71980601 71980734 -130347613 - MIR SINE MIR -66 142 13 2041 129 0 0 chr4 71980990 71981293 -130347054 - AluSq SINE Alu 0 307 5 1123 139 24 14 chr4 71981308 71981517 -130346830 + L1MA9 LINE L1 6062 6272 -40 1371 159 20 64 chr4 71981517 71981812 -130346535 - AluJo SINE Alu -22 290 9 227 45 0 114 chr4 71981826 71981870 -130346477 + L1MA9 LINE L1 6274 6312 0 1903 280 74 36 chr4 71982233 71982986 -130345361 - L2 LINE L2 -1804 1510 729 1801 177 0 0 chr4 71983323 71983617 -130344730 + AluJb SINE Alu 1 294 -18 402 338 71 13 chr4 71983618 71983929 -130344418 + L2 LINE L2 2708 3042 -271 575 146 29 0 chr4 71984072 71984175 -130344172 + L1MB8 LINE L1 6073 6178 0 2284 94 0 0 chr4 71984450 71984759 -130343588 - AluSx SINE Alu 0 309 1 22 0 0 0 chr4 71985253 71985275 -130343072 + AT_rich Low_complexity Low_complexity 1 22 0 1903 173 73 16 chr4 71986132 71986310 -130342037 + MSTB1 LTR MaLR 1 167 -265 188 0 74 0 chr4 71986310 71986337 -130342010 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 1903 173 73 16 chr4 71986337 71986540 -130341807 + MSTB1 LTR MaLR 167 404 -28 193 344 114 15 chr4 71987620 71987751 -130340596 + L2 LINE L2 2897 3040 -232 456 162 68 17 chr4 71988575 71988692 -130339655 + MER113 DNA MER1_type? 7 129 -392 612 148 174 0 chr4 71990378 71990527 -130337820 - MER53 DNA DNA -12 177 3 2304 91 29 83 chr4 71990536 71990921 -130337426 - THE1B LTR MaLR 0 364 1 2263 103 0 0 chr4 71991005 71991296 -130337051 - AluSq SINE Alu -22 291 1 206 322 87 71 chr4 71991751 71991934 -130336413 + MIR SINE MIR 23 208 -54 1319 256 27 12 chr4 71992264 71992600 -130335747 - MER58B DNA MER1_type 0 341 1 392 292 33 62 chr4 71992794 71993034 -130335313 + L1ME4a LINE L1 5878 6110 -11 250 353 33 8 chr4 71996337 71996459 -130331888 + L2 LINE L2 3158 3282 -31 2206 76 3 13 chr4 71996542 71996845 -130331502 - AluY SINE Alu -11 300 1 1082 67 0 0 chr4 71996845 71996979 -130331368 - AluY SINE Alu -177 134 1 1955 129 19 22 chr4 71997068 71997449 -130330898 + Tigger3(Golem) DNA MER2_type 1 3028 -1 279 363 0 0 chr4 71997651 71997731 -130330616 + L2 LINE L2 3196 3275 -38 245 343 0 20 chr4 71997822 71997924 -130330423 + MER5B DNA MER1_type 6 105 -73 284 279 63 0 chr4 71998267 71998346 -130330001 + MIR SINE MIR 71 154 -108 2150 121 3 7 chr4 71998665 71998971 -130329376 - AluSx SINE Alu -7 305 1 40 21 0 0 chr4 71999236 71999283 -130329064 + AT_rich Low_complexity Low_complexity 1 47 0 228 269 0 0 chr4 71999323 71999375 -130328972 - L2 LINE L2 0 3313 3262 250 263 13 118 chr4 71999650 71999802 -130328545 + MIR SINE MIR 87 222 -40 225 305 53 11 chr4 72001369 72001464 -130326883 - L1MC/D LINE L1 -1889 5919 5821 2079 66 26 46 chr4 72001464 72001766 -130326581 - AluY SINE Alu -15 296 1 435 271 19 32 chr4 72001939 72002147 -130326200 + MIR SINE MIR 1 262 0 225 170 64 0 chr4 72002254 72002301 -130326046 + CT-rich Low_complexity Low_complexity 4 53 0 297 322 186 6 chr4 72002316 72002499 -130325848 + MIR SINE MIR 6 221 -41 380 332 147 5 chr4 72002546 72002736 -130325611 + MIR SINE MIR 21 237 -25 187 298 158 35 chr4 72002965 72003079 -130325268 + MIR SINE MIR 2 129 -133 962 247 62 19 chr4 72003089 72003413 -130324934 + L1ME1 LINE L1 5825 6162 -4 589 318 36 9 chr4 72003464 72003687 -130324660 - MIR SINE MIR -21 241 13 42879 34 21 1 chr4 72004573 72010601 -130317746 - L1PA2 LINE L1 -2 6153 2 3249 111 12 8 chr4 72010602 72011096 -130317251 - L1PA10 LINE L1 -1 6167 5672 3080 132 12 0 chr4 72011096 72011596 -130316751 - L1PA10 LINE L1 -993 5153 4648 894 185 0 0 chr4 72011596 72011747 -130316600 - AluSg/x SINE Alu -6 304 154 2286 243 36 39 chr4 72011762 72012662 -130315685 - L1M4 LINE L1 -2203 3943 3047 1845 258 36 7 chr4 72012669 72013254 -130315093 - L1M4 LINE L1 -3311 2835 2234 8393 137 10 12 chr4 72013282 72015462 -130312885 - L1PA11 LINE L1 -2 7610 5417 12910 193 32 17 chr4 72015463 72016229 -130312118 - L1PA11 LINE L1 -2259 5325 4572 1856 139 0 31 chr4 72016229 72016523 -130311824 - AluSx SINE Alu -13 299 15 12910 193 32 17 chr4 72016523 72016952 -130311395 - L1PA11 LINE L1 -3012 4572 4151 459 0 0 0 chr4 72016952 72017003 -130311344 + (TG)n Simple_repeat Simple_repeat 2 52 0 12910 193 32 17 chr4 72017003 72018700 -130309647 - L1PA11 LINE L1 -3433 4151 2390 1321 105 0 0 chr4 72018754 72018925 -130309422 - AluSc SINE Alu -21 288 118 1693 225 139 41 chr4 72018928 72019595 -130308752 - L1PA11 LINE L1 -5285 2299 445 317 266 144 17 chr4 72020007 72020265 -130308082 - L1ME LINE L1 -575 5546 5254 305 339 26 26 chr4 72020345 72020537 -130307810 - L1ME LINE L1 -1000 5146 4955 1242 297 56 27 chr4 72020541 72020986 -130307361 + LTR16B LTR ERVL 1 458 -6 876 348 75 27 chr4 72021011 72021681 -130306666 + HERV16 LTR ERVL 78 779 -4217 1662 324 45 31 chr4 72021772 72022806 -130305541 + HERV16 LTR ERVL 913 2070 -3423 396 327 61 39 chr4 72022818 72023311 -130305036 - HAL1 LINE L1 -909 1598 1095 23 0 0 0 chr4 72024408 72024431 -130303916 + AT_rich Low_complexity Low_complexity 1 23 0 2466 143 20 36 chr4 72024598 72024996 -130303351 - Tigger2a DNA MER2_type -2274 434 42 2694 78 14 0 chr4 72024996 72025355 -130302992 + THE1B LTR MaLR 1 364 0 2466 143 20 36 chr4 72025355 72025397 -130302950 - Tigger2a DNA MER2_type -2666 42 1 26 0 0 0 chr4 72025397 72025423 -130302924 + AT_rich Low_complexity Low_complexity 1 26 0 2281 64 0 0 chr4 72025434 72025714 -130302633 + AluY SINE Alu 1 280 -31 198 0 0 0 chr4 72025717 72025739 -130302608 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 270 271 35 47 chr4 72026331 72026416 -130301931 + L2 LINE L2 3189 3272 0 571 238 64 30 chr4 72026450 72026603 -130301744 + MER3 DNA MER1_type 1 164 -45 189 0 0 0 chr4 72026603 72026624 -130301723 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 571 238 64 30 chr4 72026624 72026672 -130301675 + MER3 DNA MER1_type 164 209 0 931 208 27 36 chr4 72027141 72027362 -130300985 + MER20 DNA MER1_type 1 219 0 648 97 0 0 chr4 72027405 72027498 -130300849 + (TA)n Simple_repeat Simple_repeat 1 93 0 21 0 0 0 chr4 72030664 72030685 -130297662 + AT_rich Low_complexity Low_complexity 1 21 0 368 325 41 12 chr4 72031504 72031673 -130296674 - MIR SINE MIR -11 251 78 290 351 97 13 chr4 72032201 72032429 -130295918 + MIR SINE MIR 14 260 -2 873 184 6 0 chr4 72033183 72033346 -130295001 - L1PA14 LINE L1 -55 6106 5943 24 67 0 0 chr4 72035116 72035161 -130293186 + AT_rich Low_complexity Low_complexity 1 45 0 1403 140 5 0 chr4 72035729 72035950 -130292397 - AluSg/x SINE Alu 0 304 83 21 36 0 0 chr4 72036714 72036742 -130291605 + AT_rich Low_complexity Low_complexity 1 28 0 664 305 188 32 chr4 72037772 72038261 -130290086 + L2 LINE L2 2741 3313 0 846 201 12 12 chr4 72038378 72038542 -130289805 - FRAM SINE Alu -12 164 1 1071 293 12 18 chr4 72038806 72039140 -130289207 + L1MDa LINE L1 15 346 -6194 4865 226 46 31 chr4 72039439 72041134 -130287213 + L1MDa LINE L1 914 2639 -3901 698 128 0 0 chr4 72041134 72041236 -130287111 + U6 snRNA snRNA 1 102 -5 7647 172 40 3 chr4 72041241 72042735 -130285612 + L1PA11 LINE L1 2020 3569 -2577 6642 89 7 0 chr4 72042736 72042997 -130285350 + L1PA11 LINE L1 4731 4989 -1185 1872 104 4 0 chr4 72042997 72043295 -130285052 + AluSc SINE Alu 39 337 0 6642 89 7 0 chr4 72043295 72044479 -130283868 + L1PA11 LINE L1 4989 6171 -3 485 283 49 0 chr4 72044511 72044695 -130283652 + L1MDa LINE L1 2628 2820 -3720 1162 224 27 65 chr4 72044696 72045097 -130283250 + L1M4 LINE L1 4667 5052 -1094 253 274 69 24 chr4 72045231 72045377 -130282970 - MIR SINE MIR -62 146 17 2441 53 0 10 chr4 72045599 72045900 -130282447 + AluY SINE Alu 1 298 -13 250 353 33 8 chr4 72045983 72046105 -130282242 - L2 LINE L2 -31 3282 3158 392 292 33 62 chr4 72049408 72049648 -130278699 - L1ME4a LINE L1 -11 6110 5878 1319 256 27 12 chr4 72049842 72050178 -130278169 + MER58B DNA MER1_type 1 341 0 206 322 87 71 chr4 72050508 72050691 -130277656 - MIR SINE MIR -54 208 23 2263 103 0 0 chr4 72051145 72051436 -130276911 + AluSq SINE Alu 1 291 -22 2304 91 29 83 chr4 72051520 72051905 -130276442 + THE1B LTR MaLR 1 364 0 612 148 174 0 chr4 72051914 72052063 -130276284 + MER53 DNA DNA 3 177 -12 456 162 68 17 chr4 72053749 72053866 -130274481 - MER113 DNA MER1_type? -392 129 7 202 336 114 15 chr4 72054690 72054821 -130273526 - L2 LINE L2 -232 3040 2897 1903 173 73 16 chr4 72055901 72056104 -130272243 - MSTB1 LTR MaLR -28 404 214 188 0 74 0 chr4 72056104 72056131 -130272216 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1903 173 73 16 chr4 72056131 72056309 -130272038 - MSTB1 LTR MaLR -218 214 1 22 0 0 0 chr4 72057166 72057188 -130271159 + AT_rich Low_complexity Low_complexity 1 22 0 2285 94 0 0 chr4 72057682 72057995 -130270352 + AluSx SINE Alu 1 313 0 575 146 29 0 chr4 72058270 72058373 -130269974 - L1MB8 LINE L1 0 6178 6073 402 338 71 13 chr4 72058516 72058827 -130269520 - L2 LINE L2 -271 3042 2708 1801 177 0 0 chr4 72058828 72059122 -130269225 - AluJb SINE Alu -18 294 1 1903 280 74 36 chr4 72059459 72060212 -130268135 + L2 LINE L2 729 1510 -1804 227 45 0 114 chr4 72060575 72060619 -130267728 - L1MA9 LINE L1 0 6312 6274 1351 152 20 86 chr4 72060633 72060935 -130267412 + AluJo SINE Alu 9 290 -22 1123 139 24 14 chr4 72060935 72061144 -130267203 - L1MA9 LINE L1 -40 6272 6062 2042 129 0 0 chr4 72061159 72061462 -130266885 + AluSq SINE Alu 5 307 0 218 287 129 18 chr4 72061718 72061851 -130266496 + MIR SINE MIR 13 151 -66 238 257 9 62 chr4 72062457 72062570 -130265777 - MIR SINE MIR -50 212 106 262 378 18 0 chr4 72063299 72063410 -130264937 - MIR SINE MIR -125 137 25 24 67 0 0 chr4 72063480 72063525 -130264822 + AT_rich Low_complexity Low_complexity 1 45 0 745 144 28 31 chr4 72064043 72064224 -130264123 - L1MC/D LINE L1 -494 5680 5516 323 326 78 31 chr4 72064358 72064652 -130263695 - L2 LINE L2 -1363 1951 1644 294 266 0 0 chr4 72064717 72064796 -130263551 - MER116 DNA Mariner -1 79 1 21 0 0 0 chr4 72065389 72065410 -130262937 + AT_rich Low_complexity Low_complexity 1 21 0 275 414 57 9 chr4 72065505 72065836 -130262511 - L2 LINE L2 -2497 817 471 207 182 0 0 chr4 72066276 72066309 -130262038 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 205 161 0 0 chr4 72066397 72066428 -130261919 + T-rich Low_complexity Low_complexity 2 32 0 183 300 0 20 chr4 72067084 72067134 -130261213 - L2 LINE L2 -36 3277 3229 197 59 59 0 chr4 72067856 72067890 -130260457 + A-rich Low_complexity Low_complexity 4 39 0 21 57 0 0 chr4 72068080 72068115 -130260232 + AT_rich Low_complexity Low_complexity 1 35 0 2128 84 105 8 chr4 72068196 72068562 -130259785 + LTR7 LTR ERV1 1 450 0 21146 115 9 17 chr4 72068562 72072276 -130256071 + HERVH LTR ERV1 1 3993 -3720 7835 138 16 2 chr4 72072259 72073482 -130254865 + HERVH LTR ERV1 3994 5286 -1805 * 2648 131 7 0 chr4 72073479 72073899 -130254448 + HERVH LTR ERV1 5594 6016 -1697 * 3873 84 7 14 chr4 72073892 72074452 -130253895 + HERVH LTR ERV1 7157 7712 -1 2142 97 204 0 chr4 72074453 72074825 -130253522 + LTR7 LTR ERV1 1 448 -2 1582 159 26 4 chr4 72074879 72075143 -130253204 + AluJb SINE Alu 24 293 -19 573 126 0 0 chr4 72077544 72077639 -130250708 - AluSg/x SINE Alu -1 311 217 495 230 185 14 chr4 72078293 72078515 -130249832 - L1ME4a LINE L1 -89 6032 5773 307 281 81 33 chr4 72078809 72079050 -130249297 - L1ME4a LINE L1 -747 5399 5175 1296 260 44 66 chr4 72081090 72081590 -130246757 - MLT1E2 LTR MaLR 0 626 136 873 173 115 31 chr4 72081596 72081787 -130246560 + MLT1A1 LTR MaLR 1 207 -158 3414 96 6 0 chr4 72081788 72082265 -130246082 + L1PA14 LINE L1 5627 6106 -55 2314 172 89 25 chr4 72082265 72082735 -130245612 - LTR22 LTR ERVK 0 509 10 300 148 0 0 chr4 72082742 72082796 -130245551 + L1PA14 LINE L1 6099 6152 -9 818 124 29 44 chr4 72082826 72082963 -130245384 + MLT1A1 LTR MaLR 231 365 0 305 214 17 111 chr4 72082969 72083086 -130245261 - MLT1E2 LTR MaLR -399 106 1 252 260 52 0 chr4 72083165 72083242 -130245105 - Charlie4 DNA MER1_type -1832 129 49 267 206 15 15 chr4 72083621 72083689 -130244658 + GA-rich Low_complexity Low_complexity 1 68 0 2096 140 16 0 chr4 72084011 72084318 -130244029 + AluSx SINE Alu 1 312 0 1978 124 4 0 chr4 72085989 72086264 -130242083 - AluSx SINE Alu -16 296 21 515 301 68 6 chr4 72087817 72087993 -130240354 + MIR3 SINE MIR 16 202 -6 22 0 0 0 chr4 72088946 72088968 -130239379 + AT_rich Low_complexity Low_complexity 1 22 0 895 283 24 4 chr4 72089759 72090006 -130238341 - MIR SINE MIR 0 262 11 284 207 0 0 chr4 72090098 72090156 -130238191 - MIR SINE MIR -4 258 201 440 300 42 0 chr4 72091840 72091960 -130236387 + MIR SINE MIR 12 136 -126 688 341 52 30 chr4 72091966 72092097 -130236250 - L2 LINE L2 0 3272 3145 180 0 0 0 chr4 72092097 72092117 -130236230 + (CAA)n Simple_repeat Simple_repeat 2 21 0 688 341 52 30 chr4 72092117 72092723 -130235624 - L2 LINE L2 -127 3145 2521 8096 188 41 40 chr4 72092723 72094241 -130234106 + L1MA7 LINE L1 3416 4938 -1240 2183 127 7 0 chr4 72094241 72094540 -130233807 + AluSx SINE Alu 1 301 -11 8096 188 41 40 chr4 72094540 72095039 -130233308 + L1MA7 LINE L1 4938 5435 -743 2787 120 24 67 chr4 72095044 72095628 -130232719 + L1MA7 LINE L1 5731 6289 -2 384 265 14 54 chr4 72095792 72095939 -130232408 - L2 LINE L2 -72 3241 3101 416 265 56 36 chr4 72096032 72096228 -130232119 - L2 LINE L2 -2411 903 704 197 309 0 12 chr4 72096369 72096450 -130231897 + MIR SINE MIR 183 262 0 203 357 93 0 chr4 72097045 72097174 -130231173 - MIR3 SINE MIR -48 160 20 2420 75 0 28 chr4 72097484 72097802 -130230545 + AluY SINE Alu 1 309 -2 21 36 0 0 chr4 72099146 72099174 -130229173 + AT_rich Low_complexity Low_complexity 1 28 0 2108 126 0 13 chr4 72100621 72100931 -130227416 - AluSc SINE Alu -3 306 1 2192 121 3 10 chr4 72101425 72101739 -130226608 - AluSx SINE Alu 0 312 1 25 75 0 0 chr4 72102340 72102393 -130225954 + AT_rich Low_complexity Low_complexity 1 53 0 2167 120 7 10 chr4 72103089 72103390 -130224957 + AluSg SINE Alu 1 300 -10 232 321 60 60 chr4 72103663 72103797 -130224550 - MIR3 SINE MIR -67 141 8 2361 77 3 0 chr4 72103910 72104208 -130224139 + AluY SINE Alu 1 299 -12 653 312 83 21 chr4 72104304 72104631 -130223716 + L2 LINE L2 1591 1937 -1377 25 0 0 0 chr4 72105615 72105640 -130222707 + AT_rich Low_complexity Low_complexity 1 25 0 248 253 72 12 chr4 72106396 72106479 -130221868 - MIR SINE MIR -128 134 47 27 49 0 0 chr4 72106936 72106977 -130221370 + AT_rich Low_complexity Low_complexity 1 41 0 25 65 0 0 chr4 72107044 72107090 -130221257 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr4 72107456 72107477 -130220870 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 72108268 72108289 -130220058 + AT_rich Low_complexity Low_complexity 1 21 0 309 349 93 12 chr4 72109179 72109351 -130218996 + MIR SINE MIR 31 216 -46 489 80 0 0 chr4 72109455 72109530 -130218817 + (TA)n Simple_repeat Simple_repeat 2 76 0 851 288 93 81 chr4 72110178 72110522 -130217825 + MLT1J2 LTR MaLR 19 366 -43 202 244 13 13 chr4 72110674 72110752 -130217595 + GA-rich Low_complexity Low_complexity 3 80 0 26 0 0 0 chr4 72111332 72111358 -130216989 + AT_rich Low_complexity Low_complexity 1 26 0 348 274 49 0 chr4 72111551 72111653 -130216694 + MIR SINE MIR 132 238 -24 882 157 7 0 chr4 72112095 72112235 -130216112 + AluJo SINE Alu 1 141 -171 32 26 0 0 chr4 72112252 72112291 -130216056 + AT_rich Low_complexity Low_complexity 1 39 0 219 336 69 77 chr4 72112419 72112693 -130215654 + L2 LINE L2 2466 2737 -577 219 88 0 0 chr4 72112764 72112798 -130215549 + (TC)n Simple_repeat Simple_repeat 1 34 0 2345 94 3 0 chr4 72112993 72113301 -130215046 + AluY SINE Alu 1 309 -2 201 39 0 0 chr4 72115297 72115323 -130213024 + (CCCTG)n Simple_repeat Simple_repeat 3 28 0 411 346 71 74 chr4 72115482 72115875 -130212472 + L2 LINE L2 2881 3272 0 2924 9 0 0 chr4 72116343 72116661 -130211686 + AluYb8 SINE Alu 1 318 0 425 300 104 23 chr4 72116710 72116930 -130211417 - MIR SINE MIR -2 260 23 933 300 66 32 chr4 72117987 72118424 -130209923 + LTR16A1 LTR ERVL 1 452 -5 24 32 0 0 chr4 72119216 72119247 -130209100 + AT_rich Low_complexity Low_complexity 1 31 0 8936 260 44 37 chr4 72119574 72122319 -130206028 + L1PA13 LINE L1 1 2726 -4071 201 39 0 0 chr4 72122319 72122345 -130206002 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 6533 12 0 0 chr4 72122346 72123084 -130205263 - L1PA2 LINE L1 -1 6154 5417 8936 260 44 37 chr4 72123084 72125310 -130203037 + L1PA13 LINE L1 2725 4981 -1816 213 39 0 0 chr4 72125310 72125336 -130203011 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3079 28 0 0 chr4 72125336 72125694 -130202653 - L1PA3 LINE L1 -13 6142 5785 5267 36 0 0 chr4 72125694 72126340 -130202007 + L1P LINE L1 2185 2830 -3316 1542 226 24 26 chr4 72126336 72126751 -130201596 + L1 LINE L1 4317 4730 -1416 * 366 287 153 10 chr4 72126750 72126959 -130201388 + HAL1 LINE L1 1555 1793 -714 * 354 278 46 0 chr4 72127940 72128048 -130200299 - MIR SINE MIR -33 229 117 589 319 137 27 chr4 72128656 72129292 -130199055 + L2 LINE L2 1766 2471 -843 507 17 0 0 chr4 72129350 72129410 -130198937 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 2075 116 7 3 chr4 72129410 72129695 -130198652 - AluSx SINE Alu -26 286 1 26 88 0 0 chr4 72129729 72129797 -130198550 + AT_rich Low_complexity Low_complexity 1 68 0 318 311 84 18 chr4 72130759 72130926 -130197421 - MIR SINE MIR 0 262 85 7778 15 0 0 chr4 72130927 72132211 -130196136 + L1PA3 LINE L1 4908 6191 0 200 114 63 25 chr4 72132743 72132822 -130195525 + (TA)n Simple_repeat Simple_repeat 1 82 0 1010 277 72 27 chr4 72132858 72133228 -130195119 + L1ME3A LINE L1 5213 5565 -605 2250 113 0 0 chr4 72133228 72133529 -130194818 + AluSg SINE Alu 1 301 -9 1010 277 72 27 chr4 72133529 72133855 -130194492 + L1ME3A LINE L1 5565 5939 -231 232 179 26 0 chr4 72134171 72134210 -130194137 + MER90 LTR ERV1 536 575 0 1815 213 79 27 chr4 72134779 72135259 -130193088 - MLT1D LTR MaLR 0 505 1 1979 161 0 0 chr4 72135635 72135934 -130192413 + AluSx SINE Alu 1 299 -13 763 203 0 0 chr4 72186630 72186768 -130141579 + MLT1A2 LTR MaLR 237 374 0 25 51 0 0 chr4 72187299 72187338 -130141009 + AT_rich Low_complexity Low_complexity 1 39 0 1542 128 4 0 chr4 72187934 72188169 -130140178 - L1P4 LINE L1 -505 5661 5426 735 154 16 0 chr4 72188166 72188289 -130140058 + L1P LINE L1 4869 4993 -1153 * 238 267 23 92 chr4 72188289 72188420 -130139927 + MLT1D LTR MaLR 126 247 -258 1244 118 0 0 chr4 72188449 72188644 -130139703 - L1MA3 LINE L1 -1 6304 6110 1703 186 3 7 chr4 72188647 72188965 -130139382 - AluJb SINE Alu 0 312 6 6202 156 11 5 chr4 72189126 72190226 -130138121 - L1P LINE L1 -2892 3254 2148 22 70 0 0 chr4 72190382 72190425 -130137922 + AT_rich Low_complexity Low_complexity 1 43 0 268 242 27 108 chr4 72190468 72190624 -130137723 - L1MEc LINE L1 -4314 2249 2115 883 124 0 0 chr4 72190624 72190761 -130137586 - L1MA3 LINE L1 -8 6297 6161 268 242 27 108 chr4 72190761 72190827 -130137520 - L1MEc LINE L1 -4448 2115 2045 324 137 0 0 chr4 72190933 72190984 -130137363 - U5 snRNA snRNA -65 51 1 603 294 52 38 chr4 72191202 72191546 -130136801 - L1MEc LINE L1 -4543 1841 1493 1962 118 0 10 chr4 72191647 72191943 -130136404 - L1MC1 LINE L1 -17 6316 6024 2115 130 3 3 chr4 72192709 72193017 -130135330 + AluSq SINE Alu 1 308 -5 26 0 0 0 chr4 72193140 72193166 -130135181 + AT_rich Low_complexity Low_complexity 1 26 0 518 335 127 10 chr4 72193544 72193929 -130134418 + L2 LINE L2 20 449 -2865 635 279 92 67 chr4 72194029 72194509 -130133838 - L1M4 LINE L1 -1454 4692 4201 456 301 36 6 chr4 72194519 72194685 -130133662 - L1MEc LINE L1 -5888 484 314 421 259 60 46 chr4 72194699 72194915 -130133432 - L1M4 LINE L1 -967 5179 4961 1441 254 98 50 chr4 72194953 72195874 -130132473 - L1M4 LINE L1 -1356 4790 3826 9012 111 22 6 chr4 72195974 72197343 -130131004 - MER41-int LTR ERV1 -509 5437 4047 365 149 27 27 chr4 72197443 72197527 -130130820 - AluS SINE Alu -244 59 1 1700 184 16 10 chr4 72198977 72199286 -130129061 + AluSx SINE Alu 1 311 -1 678 53 53 29 chr4 72199456 72199626 -130128721 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 313 250 206 0 chr4 72199766 72199858 -130128489 + L2 LINE L2 3201 3311 -2 403 271 13 66 chr4 72200721 72200872 -130127475 - MIR SINE MIR -56 206 64 1340 145 26 13 chr4 72202136 72202370 -130125977 + L1M1 LINE L1 12 248 -7317 410 277 151 6 chr4 72203815 72203974 -130124373 - MIR SINE MIR -74 188 7 243 152 0 0 chr4 72204816 72204862 -130123485 + (TG)n Simple_repeat Simple_repeat 1 46 0 1013 128 0 7 chr4 72205022 72205170 -130123177 + AluSq SINE Alu 63 209 -104 284 281 0 0 chr4 72206206 72206270 -130122077 + (ATG)n Simple_repeat Simple_repeat 3 66 0 236 299 34 8 chr4 72206675 72206792 -130121555 - L1M2 LINE L1 -834 5466 5347 303 250 0 0 chr4 72207197 72207277 -130121070 - L1M2 LINE L1 -1316 4830 4751 852 257 42 33 chr4 72207279 72207493 -130120854 - MER58A DNA MER1_type 0 224 9 4383 216 24 63 chr4 72207604 72209302 -130119045 - L1P3 LINE L1 -4113 2684 1021 3307 99 16 12 chr4 72209313 72209798 -130118549 - LTR15 LTR ERV1 -6 487 1 2259 244 23 5 chr4 72209798 72210356 -130117991 - L1P3 LINE L1 -5271 940 373 416 157 98 20 chr4 72210559 72210661 -130117686 - MER53 DNA DNA 0 189 80 482 110 50 10 chr4 72210710 72210810 -130117537 - MER53 DNA DNA -83 106 3 372 77 0 0 chr4 72210879 72210931 -130117416 + (TG)n Simple_repeat Simple_repeat 1 52 0 186 103 0 0 chr4 72210948 72210977 -130117370 + (GA)n Simple_repeat Simple_repeat 2 30 0 289 135 180 56 chr4 72211062 72211151 -130117196 - L1ME4a LINE L1 -33 6088 5989 621 304 52 43 chr4 72211223 72211453 -130116894 - MIR SINE MIR -8 254 23 261 57 0 0 chr4 72211502 72211537 -130116810 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 1226 287 81 58 chr4 72211864 72212485 -130115862 + MER45R DNA AcHobo 1 635 -946 558 156 0 0 chr4 72212485 72212575 -130115772 - L1P4 LINE L1 -353 5813 5724 721 164 8 8 chr4 72212577 72212705 -130115642 + MER45R DNA AcHobo 585 712 -869 13651 241 30 12 chr4 72212708 72214277 -130114070 - L1PA16 LINE L1 -5 6812 5273 3514 121 86 21 chr4 72214277 72214882 -130113465 - LTR9B LTR ERV1 0 644 1 13651 241 30 12 chr4 72214882 72218664 -130109683 - L1PA16 LINE L1 -1544 5273 1358 727 323 0 35 chr4 72218686 72218918 -130109429 - L1P3 LINE L1 -6562 225 2 1851 164 97 3 chr4 72218935 72219325 -130109022 + MER45R DNA AcHobo 704 1130 -451 3100 211 29 5 chr4 72219576 72220196 -130108151 + L1P4 LINE L1 1236 1870 -4917 2990 153 53 3 chr4 72220207 72221196 -130107151 + L1P4 LINE L1 5392 6410 -406 746 257 53 0 chr4 72221439 72221626 -130106721 - MLT1B LTR MaLR -9 381 185 258 132 0 0 chr4 72221644 72221697 -130106650 + (GA)n Simple_repeat Simple_repeat 1 53 0 770 174 63 16 chr4 72221718 72221901 -130106446 - MLT1B LTR MaLR -193 181 1 1885 150 3 13 chr4 72222215 72222528 -130105819 - AluSx SINE Alu -2 310 1 25 0 0 0 chr4 72222744 72222769 -130105578 + AT_rich Low_complexity Low_complexity 1 25 0 1683 185 3 10 chr4 72222930 72223228 -130105119 - AluJo SINE Alu -8 304 9 4700 66 6 22 chr4 72223375 72224054 -130104293 + L1PA7 LINE L1 5509 6177 0 29 0 0 0 chr4 72224830 72224859 -130103488 + AT_rich Low_complexity Low_complexity 1 29 0 270 141 26 39 chr4 72225064 72225142 -130103205 + GA-rich Low_complexity Low_complexity 2 78 0 2034 112 39 7 chr4 72226792 72227078 -130101269 - AluSg SINE Alu -13 297 3 416 46 0 31 chr4 72228200 72228265 -130100082 + L1PA4 LINE L1 6087 6149 -6 29 28 0 0 chr4 72228772 72228808 -130099539 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr4 72228932 72228962 -130099385 + AT_rich Low_complexity Low_complexity 1 30 0 776 192 41 0 chr4 72228990 72229136 -130099211 - FAM SINE Alu -16 169 18 22 35 0 0 chr4 72229523 72229552 -130098795 + AT_rich Low_complexity Low_complexity 1 29 0 460 277 30 92 chr4 72229979 72230161 -130098186 - MIR SINE MIR 0 262 91 2319 111 0 0 chr4 72230161 72230458 -130097889 - AluSx SINE Alu -15 297 1 460 277 30 92 chr4 72230458 72230539 -130097808 - MIR SINE MIR -171 91 7 2261 151 36 10 chr4 72230702 72231094 -130097253 + L1PA16 LINE L1 5637 6038 -128 270 132 0 0 chr4 72231770 72231823 -130096524 + (CAAT)n Simple_repeat Simple_repeat 2 54 0 270 317 106 0 chr4 72232351 72232455 -130095892 - L2 LINE L2 -8 3305 3191 21 57 0 0 chr4 72232955 72232990 -130095357 + AT_rich Low_complexity Low_complexity 1 35 0 374 295 8 25 chr4 72233051 72233173 -130095174 - MIR3 SINE MIR -3 205 86 750 314 94 26 chr4 72233670 72234335 -130094012 - L2 LINE L2 -13 3300 2596 2677 185 25 4 chr4 72234442 72234955 -130093392 + L1MC3 LINE L1 7262 7785 0 961 183 70 15 chr4 72234975 72235248 -130093099 + MER45R DNA AcHobo 1192 1479 -102 505 270 9 0 chr4 72235305 72235420 -130092927 + FLAM_A SINE Alu 1 116 -17 365 285 60 61 chr4 72235758 72235936 -130092411 - MIR SINE MIR -52 210 34 871 315 43 13 chr4 72238346 72238651 -130089696 - L2 LINE L2 -1 3312 2999 1640 193 0 3 chr4 72238673 72238968 -130089379 + AluJb SINE Alu 2 295 -17 433 277 126 13 chr4 72239362 72239521 -130088826 - MIR SINE MIR -26 236 60 811 163 13 20 chr4 72239625 72239778 -130088569 - L1MA4 LINE L1 -262 6038 5887 2768 29 0 0 chr4 72240538 72240847 -130087500 - AluY SINE Alu -2 309 1 24 32 0 0 chr4 72241010 72241041 -130087306 + AT_rich Low_complexity Low_complexity 1 31 0 433 148 193 0 chr4 72241273 72241361 -130086986 + THE1A LTR MaLR 1 105 -250 2173 125 51 17 chr4 72241513 72241865 -130086482 + THE1B LTR MaLR 1 364 0 12041 83 5 2 chr4 72241865 72242187 -130086160 + THE1B-int LTR MaLR 1 320 -1260 1985 110 0 4 chr4 72242187 72242460 -130085887 + AluSq SINE Alu 36 307 -6 12041 83 5 2 chr4 72242460 72243712 -130084635 + THE1B-int LTR MaLR 320 1580 0 2130 131 51 17 chr4 72243712 72244064 -130084283 + THE1B LTR MaLR 1 364 0 1193 128 12 0 chr4 72244290 72244462 -130083885 + AluSg/x SINE Alu 134 307 -5 237 273 26 13 chr4 72246196 72246273 -130082074 + MLT1I LTR MaLR 72 141 -268 369 247 151 42 chr4 72246346 72246512 -130081835 + MLT1J2 LTR MaLR 267 450 0 2323 243 119 33 chr4 72246840 72247559 -130080788 + Charlie1a DNA MER1_type 1 807 -1954 1722 144 78 36 chr4 72247559 72247919 -130080428 - THE1C LTR MaLR 0 375 1 2323 243 119 33 chr4 72247919 72248055 -130080292 + Charlie1a DNA MER1_type 807 930 -525 1398 146 32 64 chr4 72248618 72248899 -130079448 + AluJb SINE Alu 35 306 -6 840 326 111 56 chr4 72249191 72249260 -130079087 + L2 LINE L2 1970 2034 -1280 2869 53 3 0 chr4 72249260 72249645 -130078702 + L1PA8 LINE L1 5806 6191 0 840 326 111 56 chr4 72249645 72250528 -130077819 + L2 LINE L2 2034 2976 -338 596 320 79 34 chr4 72251710 72251902 -130076445 + LTR16A LTR ERVL 2 184 -266 1345 168 76 4 chr4 72251902 72252164 -130076183 + L1PB4 LINE L1 5874 6154 -2 596 320 79 34 chr4 72252164 72252378 -130075969 + LTR16A LTR ERVL 184 431 -19 23 0 0 0 chr4 72252745 72252768 -130075579 + AT_rich Low_complexity Low_complexity 1 23 0 1821 102 36 4 chr4 72253255 72253621 -130074726 + LTR23 LTR ERV1 2 427 -10 1017 108 19 0 chr4 72253747 72253905 -130074442 + MER41B LTR ERV1 475 635 0 1973 139 19 16 chr4 72253906 72254222 -130074125 + MER41B-int LTR ERV1 2 318 -5628 520 128 0 0 chr4 72254215 72254293 -130074054 + MER41B-int LTR ERV1 731 808 -5138 * 3495 139 36 36 chr4 72254289 72254891 -130073456 + MER41B-int LTR ERV1 1188 1789 -4157 667 149 0 18 chr4 72254864 72254978 -130073369 + MER41B-int LTR ERV1 1951 2062 -4201 * 2202 152 22 0 chr4 72254978 72255334 -130073013 - THE1B LTR MaLR 0 364 1 3715 145 80 17 chr4 72255334 72256024 -130072323 + MER41B-int LTR ERV1 2905 3637 -3900 3702 102 28 65 chr4 72256012 72256464 -130071883 + MER41-int LTR ERV1 3300 3720 -2226 * 1911 154 0 0 chr4 72256464 72256744 -130071603 + AluSx SINE Alu 14 293 -19 3702 102 28 65 chr4 72256744 72256970 -130071377 + MER41-int LTR ERV1 3720 3953 -1993 3246 127 4 6 chr4 72257083 72257580 -130070767 + MER41B LTR ERV1 52 547 -88 1566 187 43 50 chr4 72257815 72258232 -130070115 - MER4D LTR ERV1 0 903 490 1137 134 77 160 chr4 72258217 72258420 -130069927 - MER49 LTR ERV1 -636 287 69 * 251 27 0 27 chr4 72258420 72258457 -130069890 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 1744 105 0 4 chr4 72258459 72258688 -130069659 - AluSg SINE Alu -28 282 55 1137 134 77 160 chr4 72258688 72258794 -130069553 - MER49 LTR ERV1 -855 68 1 181 364 15 0 chr4 72258831 72258897 -130069450 + L2 LINE L2 2996 3062 -251 718 275 53 5 chr4 72258911 72259100 -130069247 - MIR SINE MIR -57 205 8 354 356 67 0 chr4 72259134 72259269 -130069078 + MIR SINE MIR 3 146 -116 1794 185 20 58 chr4 72259381 72259781 -130068566 + LTR8 LTR ERV1 16 400 -291 270 81 0 0 chr4 72260747 72260784 -130067563 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 2238 67 27 7 chr4 72261421 72261718 -130066629 + AluY SINE Alu 1 303 -8 1190 307 57 11 chr4 72261862 72262299 -130066048 + L2 LINE L2 1019 1475 -1839 751 259 69 5 chr4 72262323 72262539 -130065808 + MIR SINE MIR 33 262 0 1934 284 78 47 chr4 72262543 72263215 -130065132 + L2 LINE L2 1488 2194 -1120 2229 112 0 3 chr4 72263215 72263510 -130064837 - AluSq SINE Alu -13 300 7 1934 284 78 47 chr4 72263510 72263696 -130064651 + L2 LINE L2 2194 2373 -941 455 108 0 12 chr4 72264176 72264259 -130064088 - L1MA4 LINE L1 -5 6295 6214 995 260 59 24 chr4 72264373 72264753 -130063594 - MER63B DNA MER1_type 0 435 1 21 0 0 0 chr4 72265112 72265133 -130063214 + AT_rich Low_complexity Low_complexity 1 21 0 2024 122 3 14 chr4 72265134 72265463 -130062884 - AluSq SINE Alu 0 326 1 392 249 95 85 chr4 72266075 72266264 -130062083 + L2 LINE L2 2983 3173 -99 637 281 43 0 chr4 72271224 72271409 -130056938 - L2 LINE L2 -1761 1553 1361 291 336 80 0 chr4 72271533 72271658 -130056689 - MER5A DNA MER1_type -18 171 37 1791 193 6 65 chr4 72271765 72272189 -130056158 - MLT2C1 LTR ERVL -7 513 1 185 337 87 0 chr4 72272257 72272349 -130055998 + L2 LINE L2 2926 3025 -247 225 250 0 19 chr4 72272826 72272878 -130055469 + CT-rich Low_complexity Low_complexity 4 54 0 616 269 122 35 chr4 72273145 72273521 -130054826 - HAL1 LINE L1 -1512 995 587 662 266 47 43 chr4 72273724 72273957 -130054390 - HAL1 LINE L1 -2272 235 2 318 261 109 0 chr4 72274350 72274469 -130053878 - HAL1b LINE L1 -1161 187 56 2440 146 30 24 chr4 72274881 72275347 -130053000 - L1MA5 LINE L1 0 6300 5832 4911 168 88 32 chr4 72275447 72275513 -130052834 - L1MA5 LINE L1 -762 5384 5323 2095 104 21 0 chr4 72275513 72275826 -130052521 - AluSq SINE Alu 0 319 1 4911 168 88 32 chr4 72275826 72277033 -130051314 - L1MA5 LINE L1 -823 5323 4123 207 0 0 0 chr4 72277315 72277338 -130051009 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 17653 32 1 2 chr4 72277341 72280247 -130048100 - L1PA4 LINE L1 -2 6153 3252 14113 31 5 2 chr4 72280241 72282719 -130045628 - L1PA2 LINE L1 -1 6154 3671 * 183 42 0 0 chr4 72282932 72282956 -130045391 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 28 61 0 0 chr4 72283690 72283739 -130044608 + AT_rich Low_complexity Low_complexity 1 49 0 750 167 0 0 chr4 72283819 72283939 -130044408 + FLAM_C SINE Alu 1 120 -23 21 0 0 0 chr4 72284075 72284096 -130044251 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr4 72284160 72284192 -130044155 + AT_rich Low_complexity Low_complexity 1 32 0 217 170 0 21 chr4 72284848 72284895 -130043452 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 563 285 32 0 chr4 72285005 72285163 -130043184 + MIR SINE MIR 90 252 -10 2041 92 34 0 chr4 72286551 72286845 -130041502 - AluSx SINE Alu -8 304 1 24 0 0 0 chr4 72288102 72288126 -130040221 + AT_rich Low_complexity Low_complexity 1 24 0 1688 163 11 14 chr4 72288126 72288409 -130039938 - AluJo SINE Alu -25 287 6 819 274 94 0 chr4 72288605 72288828 -130039519 + MIR SINE MIR 14 257 -5 223 370 106 45 chr4 72290048 72290407 -130037940 - L2 LINE L2 -42 3230 2850 555 198 0 0 chr4 72290484 72290585 -130037762 + MER94 DNA DNA 1 101 -33 929 247 23 9 chr4 72291050 72291269 -130037078 + MIR SINE MIR 15 236 -26 187 337 129 10 chr4 72291971 72292072 -130036275 - L2 LINE L2 -3 3310 3198 2100 118 0 3 chr4 72292281 72292577 -130035770 + AluSq SINE Alu 1 295 -18 397 315 34 40 chr4 72292628 72292777 -130035570 - L2 LINE L2 0 3272 3125 421 274 93 101 chr4 72293001 72293249 -130035098 - MIR SINE MIR 0 262 17 32 43 0 0 chr4 72294585 72294631 -130033716 + AT_rich Low_complexity Low_complexity 1 46 0 2249 110 0 7 chr4 72295017 72295327 -130033020 + AluSx SINE Alu 1 308 -4 30779 62 1 1 chr4 72295411 72299349 -130028998 + L1P LINE L1 1 3937 -2209 21 36 0 0 chr4 72300072 72300100 -130028247 + AT_rich Low_complexity Low_complexity 1 28 0 379 205 81 6 chr4 72300159 72300320 -130028027 + (TATAG)n Simple_repeat Simple_repeat 2 174 0 1809 144 66 30 chr4 72300604 72300966 -130027381 - THE1C LTR MaLR 0 375 1 9330 140 26 33 chr4 72300966 72302555 -130025792 - THE1C-int LTR MaLR 0 1580 4 1462 163 118 9 chr4 72302558 72302896 -130025451 - THE1C LTR MaLR 0 375 1 664 95 8 40 chr4 72302896 72303022 -130025325 - THE1C-int LTR MaLR 0 1580 1459 474 105 47 0 chr4 72303022 72303108 -130025239 - MER41-int LTR ERV1 -3030 2916 2827 1347 66 132 0 chr4 72303562 72303759 -130024588 + AluSc SINE Alu 84 306 -3 420 164 0 0 chr4 72304528 72304589 -130023758 - MER21B LTR ERV1 -767 96 36 1037 141 41 12 chr4 72304935 72305105 -130023242 + LTR59 LTR ERV1 1 175 -422 325 315 24 6 chr4 72305311 72305476 -130022871 - MER41B LTR ERV1 -210 425 258 1188 111 139 5 chr4 72305656 72305872 -130022475 + LTR59 LTR ERV1 178 422 -175 2000 102 102 10 chr4 72305872 72306240 -130022107 - LTR7 LTR ERV1 0 450 1 360 191 0 0 chr4 72306242 72306310 -130022037 + LTR59 LTR ERV1 414 481 -116 180 305 49 24 chr4 72306371 72306453 -130021894 + MER5A DNA MER1_type 56 139 -50 995 174 0 28 chr4 72306520 72306698 -130021649 - FRAM SINE Alu 0 176 4 2364 68 0 7 chr4 72306703 72306999 -130021348 - AluY SINE Alu -17 294 1 1982 120 3 20 chr4 72307019 72307052 -130021295 - AluSx SINE Alu -1 311 279 186 43 0 0 chr4 72307052 72307075 -130021272 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1982 120 3 20 chr4 72307075 72307342 -130021005 - AluSx SINE Alu -33 279 16 557 265 22 6 chr4 72307522 72307703 -130020644 + L1MD3 LINE L1 7809 7992 -3 728 252 22 13 chr4 72307910 72308136 -130020211 - L1M4 LINE L1 -872 5274 5047 1871 147 49 30 chr4 72308156 72308524 -130019823 + THE1C LTR MaLR 1 375 0 5253 127 19 61 chr4 72308527 72309474 -130018873 + THE1C-int LTR MaLR 4 910 -670 378 234 200 14 chr4 72309531 72309676 -130018671 + MER4C LTR ERV1 89 260 -205 238 250 0 0 chr4 72309658 72309714 -130018633 + LTR59 LTR ERV1 353 408 -189 * 7829 212 55 20 chr4 72311269 72311659 -130016688 - L1MA9 LINE L1 -122 6426 6051 243 0 0 0 chr4 72311659 72311686 -130016661 + (CA)n Simple_repeat Simple_repeat 2 28 0 7829 212 55 20 chr4 72311686 72314316 -130014031 - L1MA9 LINE L1 -497 6051 3297 1388 258 88 22 chr4 72314311 72314507 -130013840 - L1MA9 LINE L1 -3435 2947 2766 * 2256 120 0 0 chr4 72314507 72314807 -130013540 - AluSx SINE Alu -12 300 1 1388 258 88 22 chr4 72314807 72315447 -130012900 - L1MA9 LINE L1 -3616 2766 2050 2147 128 0 0 chr4 72315447 72315744 -130012603 - AluSx SINE Alu -13 299 3 1388 258 88 22 chr4 72315744 72315767 -130012580 - L1MA9 LINE L1 -4332 2050 2030 194 297 122 0 chr4 72317157 72317231 -130011116 + MIR SINE MIR 177 259 -3 1563 114 134 4 chr4 72317353 72317607 -130010740 + AluSx SINE Alu 1 287 -25 255 261 29 0 chr4 72317674 72317743 -130010604 + MIR SINE MIR 49 119 -143 229 314 116 33 chr4 72317878 72317999 -130010348 - MIR3 SINE MIR -36 172 42 244 281 8 8 chr4 72319612 72319733 -130008614 + (TCTCTG)n Simple_repeat Simple_repeat 5 125 0 33 25 0 0 chr4 72319879 72319919 -130008428 + AT_rich Low_complexity Low_complexity 1 40 0 973 248 32 16 chr4 72322164 72322410 -130005937 - MIR SINE MIR -3 259 10 1624 176 32 0 chr4 72322438 72322722 -130005625 + AluJo SINE Alu 1 293 -19 25 0 0 0 chr4 72322809 72322834 -130005513 + AT_rich Low_complexity Low_complexity 1 25 0 305 333 8 8 chr4 72323220 72323337 -130005010 + L2 LINE L2 3183 3299 -14 248 299 52 10 chr4 72323368 72323465 -130004882 - MIR SINE MIR -121 141 41 2076 94 0 34 chr4 72323598 72323895 -130004452 - AluSx SINE Alu -25 287 1 22 0 0 0 chr4 72325543 72325565 -130002782 + AT_rich Low_complexity Low_complexity 1 22 0 909 138 7 0 chr4 72328933 72329071 -129999276 + AluSq/x SINE Alu 1 139 -173 31 0 0 0 chr4 72329091 72329122 -129999225 + AT_rich Low_complexity Low_complexity 1 31 0 24 53 0 0 chr4 72330269 72330307 -129998040 + AT_rich Low_complexity Low_complexity 1 38 0 610 194 30 37 chr4 72331036 72331170 -129997177 - FLAM_C SINE Alu 0 133 1 1302 236 0 0 chr4 72332085 72332373 -129995974 - AluSx SINE Alu -19 293 6 1789 152 54 38 chr4 72333003 72333372 -129994975 - THE1C LTR MaLR 0 375 1 438 256 24 24 chr4 72333377 72333541 -129994806 - L1M4 LINE L1 -1213 4933 4770 226 331 54 15 chr4 72333771 72333901 -129994446 + MIR SINE MIR 104 238 -24 2371 70 0 10 chr4 72334051 72334349 -129993998 + AluY SINE Alu 1 295 -16 1556 189 7 24 chr4 72334638 72334934 -129993413 + AluJb SINE Alu 1 291 -21 39 38 0 0 chr4 72335227 72335280 -129993067 + AT_rich Low_complexity Low_complexity 1 53 0 262 318 77 41 chr4 72335669 72335839 -129992508 + L2 LINE L2 1177 1352 -1962 5473 158 19 9 chr4 72335963 72336923 -129991424 - LTR5 LTR ERVK 0 969 1 239 331 22 72 chr4 72337314 72337495 -129990852 - L2 LINE L2 -186 3086 2915 1261 197 112 0 chr4 72337866 72338125 -129990222 + AluJo SINE Alu 1 288 -24 35 41 0 0 chr4 72338190 72338239 -129990108 + AT_rich Low_complexity Low_complexity 1 49 0 182 351 0 14 chr4 72338394 72338468 -129989879 - MIR3 SINE MIR -11 197 125 205 197 155 14 chr4 72340866 72340937 -129987410 + MIR SINE MIR 156 236 -26 21 0 0 0 chr4 72340948 72340969 -129987378 + AT_rich Low_complexity Low_complexity 1 21 0 258 288 0 0 chr4 72341116 72341175 -129987172 + MER58 DNA MER1_type 4 62 -162 26 50 0 0 chr4 72341194 72341234 -129987113 + AT_rich Low_complexity Low_complexity 1 40 0 712 219 25 0 chr4 72341234 72341394 -129986953 - L1MB5 LINE L1 -37 6137 5974 1238 303 131 25 chr4 72341623 72342144 -129986203 + L1M4 LINE L1 9 584 -6275 3315 241 67 26 chr4 72342148 72343351 -129984996 + L1M4 LINE L1 633 1881 -4974 858 227 37 7 chr4 72343463 72343736 -129984611 + L1M4 LINE L1 3069 3349 -3608 895 185 25 45 chr4 72343811 72344005 -129984342 + Tigger2a DNA MER2_type 13 203 -226 2612 116 3 3 chr4 72344005 72344368 -129983979 - THE1B LTR MaLR 0 364 2 3446 83 40 20 chr4 72344373 72344874 -129983473 - THE1B-int LTR MaLR -4 1576 1042 2432 120 17 3 chr4 72344888 72345247 -129983100 - THE1B LTR MaLR 0 364 1 1145 146 78 0 chr4 72345247 72345466 -129982881 + Tigger2a DNA MER2_type 209 444 0 1475 223 44 15 chr4 72345471 72345950 -129982397 + L1M4 LINE L1 5645 6137 -820 867 183 114 121 chr4 72346468 72346899 -129981448 + MSTC LTR MaLR 1 428 0 2524 49 0 10 chr4 72347270 72347577 -129980770 - AluY SINE Alu -7 304 1 3473 144 94 7 chr4 72347906 72348501 -129979846 - MER41B-int LTR ERV1 -3134 2812 2166 613 170 20 0 chr4 72348507 72348621 -129979726 - MER41B-int LTR ERV1 -4158 2045 944 * 2304 118 51 19 chr4 72348600 72348972 -129979375 - MER41B-int LTR ERV1 -4171 1775 1392 4246 137 28 20 chr4 72348972 72349656 -129978691 - MER41B-int LTR ERV1 -5256 690 2 2651 150 16 14 chr4 72349788 72350227 -129978120 - MER41B-int LTR ERV1 -5494 452 13 855 158 13 0 chr4 72350227 72350379 -129977968 - MER41B LTR ERV1 -2 633 480 5673 130 27 2 chr4 72350386 72351696 -129976651 - L1PA15 LINE L1 0 6165 4804 974 164 11 0 chr4 72351672 72351855 -129976492 - L1 LINE L1 -1468 4678 4494 * 1315 235 35 20 chr4 72351868 72352273 -129976074 + L1MB8 LINE L1 4508 4918 -1228 2822 186 31 31 chr4 72352286 72352915 -129975432 + L1MB8 LINE L1 5488 6119 -59 1767 127 123 27 chr4 72352915 72353247 -129975100 + THE1B LTR MaLR 1 364 0 2822 186 31 31 chr4 72353247 72353301 -129975046 + L1MB8 LINE L1 6118 6171 -7 22 35 0 0 chr4 72355558 72355587 -129972760 + AT_rich Low_complexity Low_complexity 1 29 0 184 356 141 7 chr4 72356131 72356266 -129972081 - L2 LINE L2 -2 3311 3159 198 343 105 91 chr4 72356477 72356763 -129971584 - L2 LINE L2 -449 2865 2576 1716 193 0 13 chr4 72356771 72357087 -129971260 + AluJo SINE Alu 1 312 0 2262 94 3 7 chr4 72358094 72358401 -129969946 + AluY SINE Alu 1 306 -5 2061 123 13 7 chr4 72358410 72358720 -129969627 + AluSq SINE Alu 1 312 -1 2471 83 3 0 chr4 72359236 72359548 -129968799 - AluSp SINE Alu 0 313 1 37 39 0 0 chr4 72359892 72359943 -129968404 + AT_rich Low_complexity Low_complexity 1 51 0 578 310 114 41 chr4 72359954 72360322 -129968025 - MLT1L LTR MaLR -95 520 126 412 226 17 17 chr4 72360571 72360686 -129967661 - L1MC5 LINE L1 -37 7924 7810 368 315 28 0 chr4 72361470 72361578 -129966769 - L2 LINE L2 0 3313 3203 2217 109 20 3 chr4 72361972 72362332 -129966015 - AluSx SINE Alu 0 367 3 27 62 0 0 chr4 72362466 72362514 -129965833 + AT_rich Low_complexity Low_complexity 1 48 0 894 94 0 51 chr4 72362683 72362821 -129965526 + FLAM_C SINE Alu 2 132 -1 261 0 0 0 chr4 72362847 72362876 -129965471 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2174 48 0 0 chr4 72362914 72363184 -129965163 - L1PA6 LINE L1 -1078 5068 4799 7167 57 0 1 chr4 72363185 72364270 -129964077 + L1PA6 LINE L1 5071 6154 0 202 372 32 21 chr4 72364929 72365023 -129963324 - L2 LINE L2 -27 3245 3151 2311 93 0 3 chr4 72365030 72365342 -129963005 - AluY SINE Alu 0 311 1 1780 139 10 45 chr4 72365614 72365902 -129962445 + AluSx SINE Alu 1 278 -34 757 306 35 23 chr4 72366135 72366393 -129961954 + MIR SINE MIR 1 261 -1 691 333 93 30 chr4 72366489 72366949 -129961398 - L2 LINE L2 0 3313 2825 2263 42 0 0 chr4 72368290 72368552 -129959795 + AluY SINE Alu 34 295 -16 344 387 7 14 chr4 72372296 72372438 -129955909 + MIR3 SINE MIR 40 180 -28 24 53 0 0 chr4 72372491 72372529 -129955818 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr4 72372841 72372862 -129955485 + AT_rich Low_complexity Low_complexity 1 21 0 346 312 110 23 chr4 72374759 72374932 -129953415 + MER5A DNA MER1_type 1 188 -1 193 378 37 0 chr4 72376800 72376882 -129951465 - MIR SINE MIR -114 148 64 626 256 99 29 chr4 72376884 72377126 -129951221 - MIR SINE MIR 0 262 4 298 333 74 24 chr4 72377650 72377847 -129950500 - MIR SINE MIR -59 203 1 700 339 33 0 chr4 72378400 72378642 -129949705 - MIR SINE MIR -1 261 12 239 355 0 0 chr4 72378646 72378722 -129949625 - MIR SINE MIR -93 115 40 25 0 0 0 chr4 72378722 72378747 -129949600 + AT_rich Low_complexity Low_complexity 1 25 0 756 324 8 12 chr4 72378924 72379174 -129949173 - MLT1J LTR MaLR -9 502 254 316 309 87 20 chr4 72379214 72379363 -129948984 - MLT1J LTR MaLR -346 165 7 362 271 0 9 chr4 72379417 72379524 -129948823 - L2 LINE L2 -1017 2297 2192 22 35 0 0 chr4 72379686 72379715 -129948632 + AT_rich Low_complexity Low_complexity 1 29 0 1263 150 106 0 chr4 72380052 72380298 -129948049 - L1MA4 LINE L1 -12 6288 6017 6792 50 10 38 chr4 72381896 72383307 -129945040 + L1PA7 LINE L1 4748 6141 -13 821 138 14 0 chr4 72383824 72383962 -129944385 + CT-rich Low_complexity Low_complexity 1 140 0 2059 126 3 10 chr4 72383962 72384264 -129944083 - AluSc SINE Alu -9 300 1 209 224 0 41 chr4 72385328 72385377 -129942970 + CT-rich Low_complexity Low_complexity 2 48 0 25 31 0 0 chr4 72386263 72386295 -129942052 + AT_rich Low_complexity Low_complexity 1 32 0 2151 131 0 0 chr4 72386336 72386634 -129941713 - AluSx SINE Alu -14 298 1 2099 120 0 0 chr4 72387087 72387361 -129940986 + AluSx SINE Alu 1 274 -38 231 146 0 0 chr4 72387363 72387404 -129940943 + (TA)n Simple_repeat Simple_repeat 1 41 0 3960 147 66 55 chr4 72387655 72387852 -129940495 + MER4D LTR ERV1 1 194 -470 2337 62 3 39 chr4 72387852 72388159 -129940188 + AluSg1 SINE Alu 1 296 -13 3960 147 66 55 chr4 72388159 72388824 -129939523 + MER4D LTR ERV1 194 660 -4 483 135 42 21 chr4 72388857 72388953 -129939394 + MER4A LTR ERV1 1 98 -566 1732 131 24 23 chr4 72388953 72389290 -129939057 + MER4A LTR ERV1 263 658 -6 2522 109 67 56 chr4 72389301 72389620 -129938727 + MER4A-int LTR ERV1 1 315 -6283 2137 136 3 0 chr4 72389620 72389929 -129938418 - AluSx SINE Alu -2 310 1 2522 109 67 56 chr4 72389929 72390015 -129938332 + MER4A-int LTR ERV1 315 414 -6184 2512 79 122 10 chr4 72390015 72390418 -129937929 + LTR7 LTR ERV1 1 448 -2 2522 109 67 56 chr4 72390418 72390442 -129937905 + MER4A-int LTR ERV1 414 436 -6162 7850 120 61 31 chr4 72390444 72390694 -129937653 + MER4A-int LTR ERV1 498 739 -5859 207 114 0 0 chr4 72390694 72390729 -129937618 + (CAA)n Simple_repeat Simple_repeat 3 37 0 7850 120 61 31 chr4 72390729 72391326 -129937021 + MER4A-int LTR ERV1 739 1317 -5281 2518 78 125 5 chr4 72391326 72391726 -129936621 - LTR7 LTR ERV1 -2 448 1 7850 120 61 31 chr4 72391726 72392714 -129935633 + MER4A-int LTR ERV1 1317 2478 -4120 1891 132 6 52 chr4 72392720 72393046 -129935301 - AluY SINE Alu 0 311 1 1903 159 0 0 chr4 72393055 72393344 -129935003 - AluSx SINE Alu -23 289 1 588 179 127 0 chr4 72393367 72393501 -129934846 - LTR8 LTR ERV1 -434 257 107 4108 122 53 16 chr4 72393504 72394208 -129934139 + MER4A-int LTR ERV1 5867 6596 -2 495 186 21 10 chr4 72394216 72394313 -129934034 + MER4A LTR ERV1 1 98 -566 1782 139 20 22 chr4 72394313 72394659 -129933688 + MER4A LTR ERV1 261 664 0 281 286 29 0 chr4 72395173 72395243 -129933104 - L2 LINE L2 0 3313 3242 1321 129 133 85 chr4 72395440 72395734 -129932613 - AluSx SINE Alu -4 308 1 2154 110 0 7 chr4 72396323 72396613 -129931734 + AluSx SINE Alu 3 290 -22 2001 135 6 10 chr4 72396634 72396945 -129931402 + AluSx SINE Alu 1 310 -2 3207 79 41 48 chr4 72397171 72397452 -129930895 - LTR10D LTR ERV1 0 513 236 2296 63 40 3 chr4 72397452 72397752 -129930595 + AluY SINE Alu 1 311 0 3207 79 41 48 chr4 72397752 72397987 -129930360 - LTR10D LTR ERV1 -277 236 1 226 291 23 12 chr4 72398353 72398439 -129929908 - Charlie8 DNA MER1_type -1 2416 2330 2514 70 0 3 chr4 72398471 72398783 -129929564 + AluY SINE Alu 1 311 0 620 259 54 54 chr4 72398815 72399039 -129929308 - Charlie8 DNA MER1_type -2157 260 37 219 170 0 0 chr4 72399185 72399232 -129929115 + (CA)n Simple_repeat Simple_repeat 2 48 0 336 292 97 26 chr4 72400621 72400775 -129927572 - MIR SINE MIR -40 222 58 22 0 0 0 chr4 72401242 72401264 -129927083 + AT_rich Low_complexity Low_complexity 1 22 0 263 222 40 20 chr4 72401354 72401453 -129926894 - L1MC4 LINE L1 -1328 6714 6614 263 217 0 33 chr4 72401388 72401480 -129926867 + L1MC4 LINE L1 6614 6702 -1340 324 0 0 0 chr4 72402178 72402214 -129926133 + (TA)n Simple_repeat Simple_repeat 1 36 0 285 311 105 22 chr4 72402237 72402465 -129925882 - HAL1 LINE L1 -962 1545 1299 243 208 69 14 chr4 72402434 72402506 -129925841 - L1MEd LINE L1 -4902 1217 1142 * 30 0 0 0 chr4 72402940 72402970 -129925377 + AT_rich Low_complexity Low_complexity 1 30 0 2276 101 0 7 chr4 72403440 72403738 -129924609 - AluSc SINE Alu -13 296 1 2018 118 3 38 chr4 72403870 72404184 -129924163 - AluSq SINE Alu -10 303 1 21 0 0 0 chr4 72404187 72404208 -129924139 + AT_rich Low_complexity Low_complexity 1 21 0 449 336 43 17 chr4 72404694 72404926 -129923421 - L2 LINE L2 -428 2886 2649 30 45 0 0 chr4 72405070 72405114 -129923233 + AT_rich Low_complexity Low_complexity 1 44 0 40036 71 13 2 chr4 72405116 72411200 -129917147 + L1PA6 LINE L1 4 6152 -2 254 277 121 0 chr4 72411435 72411518 -129916829 + MER87 LTR ERV1 377 469 -72 207 72 21 93 chr4 72411532 72411629 -129916718 + (TAA)n Simple_repeat Simple_repeat 1 90 0 245 104 62 0 chr4 72411644 72411692 -129916655 + (TATAA)n Simple_repeat Simple_repeat 3 53 0 210 351 79 40 chr4 72411721 72411923 -129916424 - L2 LINE L2 -192 3080 2871 314 321 7 29 chr4 72411974 72412114 -129916233 - L2 LINE L2 -552 2762 2626 336 328 16 32 chr4 72412119 72412244 -129916103 - L2 LINE L2 0 3272 3150 330 286 95 49 chr4 72412299 72412603 -129915744 - L1ME4a LINE L1 -15 6106 5789 279 256 154 0 chr4 72412624 72412741 -129915606 - L1ME4a LINE L1 -399 5722 5588 848 231 0 0 chr4 72412860 72413020 -129915327 - MER5B DNA MER1_type -18 160 1 257 350 43 8 chr4 72414146 72414263 -129914084 + L2 LINE L2 3177 3297 -16 2128 110 7 3 chr4 72414373 72414674 -129913673 - AluSx SINE Alu -10 302 1 1677 185 4 0 chr4 72415564 72415893 -129912454 + AluJb SINE Alu 1 330 0 448 250 113 86 chr4 72416032 72416196 -129912151 + LTR33 LTR ERVL 13 188 -333 2591 39 0 13 chr4 72416196 72416507 -129911840 + AluY SINE Alu 4 310 -1 448 250 113 86 chr4 72416507 72416598 -129911749 + LTR33 LTR ERVL 188 275 -246 244 290 0 54 chr4 72416844 72416937 -129911410 + L2 LINE L2 3171 3258 -55 2062 132 0 0 chr4 72417171 72417452 -129910895 - AluSx SINE Alu -31 281 1 878 257 79 13 chr4 72417463 72417977 -129910370 - L1 LINE L1 -3662 3903 3358 1078 68 0 0 chr4 72419652 72419785 -129908562 + AluSp/q SINE Alu 171 303 -10 367 267 56 0 chr4 72420030 72420120 -129908227 - MER5A DNA MER1_type -88 101 7 21 36 0 0 chr4 72420155 72420183 -129908164 + AT_rich Low_complexity Low_complexity 1 28 0 189 241 56 19 chr4 72420282 72420336 -129908011 - MIR SINE MIR -63 145 90 1505 185 82 27 chr4 72421248 72421578 -129906769 - MER7A DNA MER2_type 0 346 1 1329 131 34 0 chr4 72423514 72423720 -129904627 + MER2 DNA MER2_type 1 213 -132 263 191 16 0 chr4 72425030 72425093 -129903254 + (CATA)n Simple_repeat Simple_repeat 3 66 0 444 315 77 40 chr4 72426819 72427041 -129901306 - MIR SINE MIR 0 262 33 823 154 0 0 chr4 72427270 72427400 -129900947 + FLAM_C SINE Alu 1 130 -3 222 222 44 0 chr4 72428041 72428086 -129900261 + MER5A DNA MER1_type 41 87 -102 27 29 0 0 chr4 72428251 72428285 -129900062 + AT_rich Low_complexity Low_complexity 1 34 0 254 105 11 84 chr4 72428423 72428518 -129899829 + (TA)n Simple_repeat Simple_repeat 1 88 0 477 231 0 0 chr4 72429628 72429775 -129898572 + CT-rich Low_complexity Low_complexity 1 147 0 21 0 0 0 chr4 72430854 72430875 -129897472 + AT_rich Low_complexity Low_complexity 1 21 0 1771 151 4 4 chr4 72431034 72431306 -129897041 + AluSx SINE Alu 1 272 -40 1895 216 168 26 chr4 72431558 72432200 -129896147 + L1MC4 LINE L1 7303 8035 -7 667 213 142 11 chr4 72433958 72434141 -129894206 + MER58C DNA MER1_type 9 215 0 292 202 263 18 chr4 72434557 72434671 -129893676 - MLT1G LTR MaLR 0 590 414 180 0 0 0 chr4 72434681 72434701 -129893646 + (CTGGGG)n Simple_repeat Simple_repeat 4 23 0 355 266 201 32 chr4 72434702 72434856 -129893491 - MLT1G LTR MaLR -203 387 208 2224 94 0 16 chr4 72435659 72435967 -129892380 - AluSx SINE Alu -9 303 1 24 41 0 20 chr4 72435979 72436009 -129892338 + AT_rich Low_complexity Low_complexity 1 31 -17 1612 103 22 9 chr4 72436009 72436241 -129892106 - AluSq SINE Alu -16 297 63 24 41 0 20 chr4 72436241 72436259 -129892088 + AT_rich Low_complexity Low_complexity 31 48 0 410 250 50 43 chr4 72436890 72437030 -129891317 - Charlie8 DNA MER1_type -2190 227 87 1675 173 25 7 chr4 72437219 72437496 -129890851 + AluJb SINE Alu 1 282 -30 31 26 0 0 chr4 72437863 72437901 -129890446 + AT_rich Low_complexity Low_complexity 1 38 0 898 186 167 0 chr4 72438287 72438491 -129889856 + Tigger3(Golem) DNA MER2_type 2792 3029 0 241 136 0 0 chr4 72438534 72438578 -129889769 + LTR66 LTR ERVL 394 437 -173 1385 160 94 0 chr4 72438599 72438843 -129889504 + AluJb SINE Alu 1 267 -45 2645 187 30 31 chr4 72438874 72439414 -129888933 + MER44D DNA MER2_type 1 594 -11 196 286 0 0 chr4 72439579 72439628 -129888719 - L2 LINE L2 -75 3197 3149 22 56 0 0 chr4 72440432 72440468 -129887879 + AT_rich Low_complexity Low_complexity 1 36 0 290 282 220 48 chr4 72441315 72441542 -129886805 - L3 LINE CR1 -13 1564 1299 183 80 0 0 chr4 72442235 72442260 -129886087 + (CCG)n Simple_repeat Simple_repeat 3 27 0 1642 77 5 0 chr4 72442990 72443199 -129885148 - AluSc SINE Alu -16 293 84 313 149 6 23 chr4 72443199 72443274 -129885073 - Alu SINE Alu -261 39 1 1387 143 37 82 chr4 72443612 72443906 -129884441 - AluJo SINE Alu -21 291 11 209 83 28 0 chr4 72443958 72443994 -129884353 + (CA)n Simple_repeat Simple_repeat 2 38 0 2080 113 11 3 chr4 72444106 72444390 -129883957 + AluSx SINE Alu 1 286 -26 452 236 24 16 chr4 72444409 72444536 -129883811 + L1MC5 LINE L1 7729 7856 -105 320 83 150 17 chr4 72444541 72444601 -129883746 + MER4A LTR ERV1 1 68 -596 * 1153 100 18 12 chr4 72444595 72444765 -129883582 + MER4B LTR ERV1 440 610 0 1701 175 0 14 chr4 72444987 72445284 -129883063 + AluJb SINE Alu 1 293 -19 350 294 96 23 chr4 72445419 72445596 -129882751 + MIR SINE MIR 5 194 -68 1228 155 41 41 chr4 72445836 72446073 -129882274 - L1MB1 LINE L1 -614 5720 5481 2449 165 14 32 chr4 72446073 72446170 -129882177 + L1MB1 LINE L1 5733 5830 -338 1862 158 7 3 chr4 72446170 72446480 -129881867 + AluSx SINE Alu 1 311 -1 2449 165 14 32 chr4 72446480 72446824 -129881523 + L1MB1 LINE L1 5830 6167 -1 2762 211 84 52 chr4 72446982 72447898 -129880449 + L1ME1 LINE L1 4539 5488 -676 1715 177 13 7 chr4 72447898 72448203 -129880144 + AluJb SINE Alu 4 310 -2 2762 211 84 52 chr4 72448203 72448361 -129879986 + L1ME1 LINE L1 5488 5640 -524 860 204 183 11 chr4 72448365 72448639 -129879708 + L1ME1 LINE L1 5766 6086 -80 1876 202 27 60 chr4 72448639 72448918 -129879429 + MER31B LTR ERV1 3 261 -205 1074 241 103 57 chr4 72448918 72449216 -129879131 + MLT1A1 LTR MaLR 1 320 -45 2200 99 3 3 chr4 72449216 72449536 -129878811 + AluSx SINE Alu 1 320 0 1074 241 103 57 chr4 72449536 72449585 -129878762 + MLT1A1 LTR MaLR 320 365 0 1876 202 27 60 chr4 72449585 72449785 -129878562 + MER31B LTR ERV1 261 466 0 649 228 96 96 chr4 72449962 72450326 -129878021 - Charlie8 DNA MER1_type -165 2252 1889 2179 114 3 3 chr4 72450428 72450726 -129877621 - AluSx SINE Alu -14 298 1 1815 125 18 11 chr4 72450776 72451082 -129877265 - AluSx SINE Alu 0 308 1 393 299 96 37 chr4 72451227 72451414 -129876933 + LTR33 LTR ERVL 159 356 -165 1561 210 10 62 chr4 72451417 72451807 -129876540 + MLT1A2 LTR MaLR 1 370 -4 409 167 132 35 chr4 72451821 72451935 -129876412 + LTR33 LTR ERVL 397 521 0 180 0 0 0 chr4 72452778 72452798 -129875549 + (CCA)n Simple_repeat Simple_repeat 1 20 0 363 296 32 65 chr4 72453131 72453317 -129875030 + MIR SINE MIR 3 182 -80 1188 126 6 0 chr4 72453414 72453588 -129874759 + MER4A LTR ERV1 1 175 -489 998 217 0 39 chr4 72453624 72453854 -129874493 + AluJo SINE Alu 75 295 -17 633 204 0 0 chr4 72453910 72454018 -129874329 + FRAM SINE Alu 64 171 -5 962 192 15 30 chr4 72454074 72454272 -129874075 - MLT1A1 LTR MaLR -170 195 1 1804 205 22 64 chr4 72454496 72454950 -129873397 + MER63B DNA MER1_type 1 435 -1 296 319 178 0 chr4 72455709 72455872 -129872475 + L2 LINE L2 2175 2366 -948 445 73 12 61 chr4 72456252 72456334 -129872013 + LTR36 LTR ERV1 1 78 -533 1586 146 68 89 chr4 72456335 72456718 -129871629 + THE1C LTR MaLR 1 375 0 9390 150 4 48 chr4 72456721 72457089 -129871258 + THE1C-int LTR MaLR 4 387 -1193 2283 98 0 7 chr4 72457089 72457386 -129870961 - AluY SINE Alu -16 295 1 9390 150 4 48 chr4 72457386 72458666 -129869681 + THE1C-int LTR MaLR 387 1580 0 1982 125 65 46 chr4 72458666 72459034 -129869313 + THE1C LTR MaLR 1 375 0 1866 141 63 167 chr4 72459034 72459412 -129868935 + LTR36 LTR ERV1 76 371 -240 1611 109 5 9 chr4 72459412 72459632 -129868715 + L1PA8A LINE L1 5913 6131 0 1866 141 63 167 chr4 72459632 72459851 -129868496 + LTR36 LTR ERV1 371 611 0 1682 171 0 49 chr4 72460109 72460223 -129868124 + AluJb SINE Alu 1 119 -193 3323 98 50 25 chr4 72460223 72460703 -129867644 + LTR22B LTR ERVK 1 492 0 1682 171 0 49 chr4 72460703 72460916 -129867431 + AluJb SINE Alu 119 312 0 225 170 213 0 chr4 72460955 72461002 -129867345 + MIR SINE MIR 87 143 -65 340 323 30 8 chr4 72461875 72462008 -129866339 - MER5A DNA MER1_type 0 189 54 1317 189 124 4 chr4 72462014 72462273 -129866074 + AluJo SINE Alu 5 294 -8 2069 94 45 7 chr4 72462276 72462564 -129865783 + AluSp SINE Alu 1 299 -14 2159 138 0 0 chr4 72462576 72462888 -129865459 + AluSx SINE Alu 1 312 0 398 263 116 66 chr4 72463006 72463204 -129865143 + MIR SINE MIR 28 235 -27 22 56 0 0 chr4 72463226 72463262 -129865085 + AT_rich Low_complexity Low_complexity 1 36 0 2206 108 0 0 chr4 72463606 72463901 -129864446 + AluSg1 SINE Alu 1 295 -14 1998 177 18 24 chr4 72463911 72464250 -129864097 + MER1B DNA MER1_type 1 337 0 250 246 31 0 chr4 72464395 72464460 -129863887 - MIR SINE MIR -58 204 138 1985 112 24 17 chr4 72464473 72464760 -129863587 - AluSx SINE Alu -23 289 1 250 247 49 25 chr4 72466242 72466323 -129862024 - LTR67 LTR ERVL -379 178 96 382 270 0 0 chr4 72466465 72466554 -129861793 - L1ME LINE L1 -502 5619 5531 1954 121 10 7 chr4 72466693 72466991 -129861356 - AluSx SINE Alu -13 299 1 2275 93 0 16 chr4 72467233 72467543 -129860804 - AluSx SINE Alu -7 305 1 1054 88 0 7 chr4 72467543 72467679 -129860668 - AluSq/x SINE Alu -177 135 1 806 195 69 19 chr4 72468232 72468391 -129859956 + FRAM SINE Alu 6 172 -4 27 49 0 0 chr4 72469163 72469204 -129859143 + AT_rich Low_complexity Low_complexity 1 41 0 1170 229 108 16 chr4 72470326 72470641 -129857706 + MER2 DNA MER2_type 1 344 0 228 351 88 6 chr4 72470664 72470835 -129857512 + HAL1 LINE L1 1554 1738 -769 264 218 59 59 chr4 72471812 72471914 -129856433 + MLT1H1 LTR MaLR 283 540 -15 464 306 174 30 chr4 72472104 72472569 -129855778 + L1ME2 LINE L1 5337 5871 -293 2153 119 3 6 chr4 72474068 72474379 -129853968 - AluSx SINE Alu -2 310 1 180 0 0 0 chr4 72474506 72474526 -129853821 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 27 22 0 22 chr4 72474917 72474950 -129853397 + AT_rich Low_complexity Low_complexity 1 34 -10 2382 60 0 23 chr4 72474950 72475251 -129853096 + AluY SINE Alu 1 294 -17 27 22 0 22 chr4 72475251 72475262 -129853085 + AT_rich Low_complexity Low_complexity 34 44 0 264 62 0 0 chr4 72475278 72475310 -129853037 - U2 snRNA snRNA -152 36 5 207 0 0 0 chr4 72475378 72475401 -129852946 + (TTTAA)n Simple_repeat Simple_repeat 2 24 0 708 178 16 31 chr4 72475401 72475523 -129852824 - FLAM_A SINE Alu -176 126 5 821 279 60 97 chr4 72475650 72476184 -129852163 + LTR67 LTR ERVL 42 555 -2 236 345 36 14 chr4 72476211 72476350 -129851997 - MIR SINE MIR -87 175 34 268 229 36 48 chr4 72476507 72476590 -129851757 + MLT1J1 LTR MaLR 365 446 0 465 274 86 35 chr4 72477869 72478066 -129850281 + MLT1J1 LTR MaLR 1 207 -243 1628 128 31 0 chr4 72478080 72478337 -129850010 - L1MA5A LINE L1 -25 6272 6008 231 227 0 53 chr4 72478427 72478502 -129849845 + MLT1J2 LTR MaLR 380 450 0 28 29 0 0 chr4 72478551 72478586 -129849761 + AT_rich Low_complexity Low_complexity 1 35 0 2220 90 3 7 chr4 72479163 72479453 -129848894 - AluSg SINE Alu -21 289 1 1843 154 28 0 chr4 72479457 72479743 -129848604 - AluJo SINE Alu -18 294 1 318 259 172 0 chr4 72479747 72479863 -129848484 + MIR SINE MIR 82 217 -45 2147 132 0 0 chr4 72479864 72480168 -129848179 + AluSx SINE Alu 1 304 -8 2343 99 0 0 chr4 72480354 72480657 -129847690 - AluSq SINE Alu -10 303 1 4303 92 82 8 chr4 72481779 72482379 -129845968 - LTR9B LTR ERV1 0 644 1 2818 123 25 7 chr4 72482783 72483215 -129845132 + MER4C LTR ERV1 1 440 -25 261 308 13 0 chr4 72483315 72483393 -129844954 - MIR SINE MIR -110 152 74 2366 99 0 3 chr4 72484228 72484540 -129843807 - AluSq SINE Alu -2 311 1 1830 175 0 0 chr4 72484694 72484991 -129843356 + AluSx SINE Alu 1 297 -15 25 51 0 0 chr4 72485843 72485882 -129842465 + AT_rich Low_complexity Low_complexity 1 39 0 2729 169 41 35 chr4 72486191 72486320 -129842027 + MER21A LTR ERV1 415 542 -389 2044 148 0 3 chr4 72486320 72486625 -129841722 - AluSx SINE Alu -8 304 1 2729 169 41 35 chr4 72486625 72487009 -129841338 + MER21A LTR ERV1 542 931 0 3080 156 18 12 chr4 72487009 72487515 -129840832 + MER21A-int LTR ERV1 1 509 -3682 2869 155 19 4 chr4 72487515 72487979 -129840368 + MER50 LTR ERV1 1 471 -263 319 159 48 0 chr4 72487977 72488040 -129840307 + MER50 LTR ERV1 646 711 -23 * 19947 178 29 18 chr4 72488041 72491687 -129836660 + MER21A-int LTR ERV1 506 4191 0 1287 160 108 18 chr4 72491687 72492126 -129836221 + MER21B LTR ERV1 1 499 -364 1818 223 41 24 chr4 72492236 72492806 -129835541 - L1M4b LINE L1 -5610 1249 633 983 318 86 29 chr4 72492888 72493331 -129835016 - L1M4b LINE L1 -6383 476 9 520 208 18 86 chr4 72493712 72493933 -129834414 - AluSx SINE Alu -104 208 3 1387 143 37 82 chr4 72494139 72494433 -129833914 + AluJo SINE Alu 11 291 -21 314 142 7 0 chr4 72494772 72494847 -129833500 + Alu SINE Alu 1 39 -261 3503 65 0 0 chr4 72494973 72495390 -129832957 + L1PA5 LINE L1 5738 6154 0 195 300 43 29 chr4 72496049 72496119 -129832228 - L2 LINE L2 -27 3245 3175 932 195 0 14 chr4 72496151 72496361 -129831986 - AluY SINE Alu -1 310 104 4507 225 72 18 chr4 72496526 72497942 -129830405 - L1MEd LINE L1 -1486 4643 3151 257 233 96 0 chr4 72497955 72498028 -129830319 - L1MEd LINE L1 -3006 3123 3044 * 343 237 66 29 chr4 72498012 72498184 -129830163 - L1MEd LINE L1 -3427 2702 2520 364 303 3 31 chr4 72498392 72498577 -129829770 + G-rich Low_complexity Low_complexity 1 179 0 1970 166 37 59 chr4 72498731 72499277 -129829070 + MER4B LTR ERV1 195 606 -4 532 134 31 21 chr4 72499310 72499407 -129828940 + MER4A LTR ERV1 1 98 -566 1769 128 23 28 chr4 72499407 72499750 -129828597 + MER4A LTR ERV1 263 662 -2 258 208 66 15 chr4 72500301 72500382 -129827965 - L1MEd LINE L1 -4902 1217 1142 30 0 0 0 chr4 72500815 72500845 -129827502 + AT_rich Low_complexity Low_complexity 1 30 0 2284 101 0 7 chr4 72501315 72501613 -129826734 - AluSc SINE Alu -13 296 1 1954 127 3 38 chr4 72501745 72502059 -129826288 - AluSq SINE Alu -10 303 1 21 0 0 0 chr4 72502062 72502083 -129826264 + AT_rich Low_complexity Low_complexity 1 21 0 421 340 43 17 chr4 72502569 72502801 -129825546 - L2 LINE L2 -428 2886 2649 29 28 0 0 chr4 72502945 72502981 -129825366 + AT_rich Low_complexity Low_complexity 1 36 0 290 253 131 17 chr4 72502991 72503119 -129825228 + L1P3 LINE L1 10 436 -6025 1774 151 29 45 chr4 72554546 72554924 -129773423 - THE1C LTR MaLR -3 372 1 55 16 0 0 chr4 72555106 72555168 -129773179 + AT_rich Low_complexity Low_complexity 1 62 0 303 164 103 36 chr4 72555168 72555333 -129773014 + (TTAAA)n Simple_repeat Simple_repeat 5 180 0 620 209 108 43 chr4 72557728 72557943 -129770404 - L1M4 LINE L1 -596 5582 5355 810 241 29 100 chr4 72558185 72558573 -129769774 - L1M4 LINE L1 -1106 5040 4697 681 246 0 8 chr4 72558573 72558707 -129769640 - FLAM_A SINE Alu 0 133 1 810 241 29 100 chr4 72558707 72558837 -129769510 - L1M4 LINE L1 -1449 4697 4559 4273 207 25 17 chr4 72559172 72560616 -129767731 - L1P4 LINE L1 -568 5598 4139 22 70 0 0 chr4 72560647 72560690 -129767657 + AT_rich Low_complexity Low_complexity 1 43 0 13481 85 3 27 chr4 72561248 72563338 -129765009 - L1P LINE L1 -3252 2894 856 678 335 93 30 chr4 72563512 72563972 -129764375 - L2 LINE L2 0 3313 2825 2055 61 0 8 chr4 72565323 72565587 -129762760 + AluY SINE Alu 34 295 -16 191 333 31 52 chr4 72666735 72666831 -129661516 - MIR SINE MIR -110 152 59 208 303 131 0 chr4 72668179 72668278 -129660069 - MIR SINE MIR -60 148 37 2491 54 0 3 chr4 72668627 72668924 -129659423 - AluY SINE Alu -15 296 1 851 234 77 25 chr4 72669211 72669446 -129658901 - MIR SINE MIR 0 262 16 2098 115 0 20 chr4 72670040 72670344 -129658003 + AluSx SINE Alu 3 300 -12 2054 128 3 3 chr4 72671049 72671345 -129657002 - AluSx SINE Alu -14 298 3 255 296 11 34 chr4 72671468 72671556 -129656791 + L2 LINE L2 3226 3311 -2 400 195 0 0 chr4 72672405 72672482 -129655865 + MER116 DNA Mariner 4 80 0 422 292 177 0 chr4 72672565 72672695 -129655652 + MER5A DNA MER1_type 28 180 -9 267 239 218 7 chr4 72673236 72673378 -129654969 + MIR SINE MIR 50 221 -41 281 315 11 22 chr4 72673508 72673597 -129654750 + L2 LINE L2 3185 3272 0 246 389 42 24 chr4 72675226 72675393 -129652954 + MIR3 SINE MIR 20 189 -19 21 36 0 0 chr4 72675641 72675669 -129652678 + AT_rich Low_complexity Low_complexity 1 28 0 193 348 108 43 chr4 72677389 72677767 -129650580 + L2 LINE L2 2140 2623 -691 407 302 68 31 chr4 72678192 72678414 -129649933 - L1ME LINE L1 -371 5750 5521 471 199 15 24 chr4 72678976 72679180 -129649167 + CT-rich Low_complexity Low_complexity 1 202 0 1278 207 30 3 chr4 72680013 72680317 -129648030 - MER33 DNA MER1_type -12 312 1 4487 226 31 3 chr4 72680451 72681463 -129646884 - MER45B DNA AcHobo 0 1040 1 288 319 43 26 chr4 72682159 72682275 -129646072 + MER5A DNA MER1_type 63 180 -9 309 324 46 0 chr4 72683258 72683366 -129644981 - L2 LINE L2 -13 3300 3188 594 264 80 20 chr4 72683415 72683616 -129644731 + MER20 DNA MER1_type 7 219 0 241 347 14 0 chr4 72683764 72683836 -129644511 - L2 LINE L2 -213 3059 2987 23 0 0 0 chr4 72685032 72685055 -129643292 + AT_rich Low_complexity Low_complexity 1 23 0 2000 98 50 34 chr4 72685887 72686184 -129642163 - AluSq SINE Alu -9 304 3 2154 128 0 0 chr4 72686194 72686500 -129641847 - AluSx SINE Alu -6 306 1 895 215 108 39 chr4 72686780 72687130 -129641217 - L1MD2 LINE L1 -12 6230 5905 3840 192 103 67 chr4 72687141 72688446 -129639901 - L1MDa LINE L1 -4124 2416 1065 33 0 0 0 chr4 72688507 72688540 -129639807 + AT_rich Low_complexity Low_complexity 1 33 0 5070 138 11 11 chr4 72688541 72689373 -129638974 - L1PA15 LINE L1 -1 6815 5981 1878 168 56 98 chr4 72689373 72689413 -129638934 - MSTA LTR MaLR 0 428 388 1675 166 38 3 chr4 72689413 72689703 -129638644 + AluJb SINE Alu 1 300 -12 1878 168 56 98 chr4 72689703 72690109 -129638238 - MSTA LTR MaLR -40 388 1 963 112 6 73 chr4 72690109 72690228 -129638119 - MSTA-int LTR MaLR 0 1651 1546 1568 219 17 0 chr4 72690228 72690520 -129637827 + AluJb SINE Alu 1 297 -15 963 112 6 73 chr4 72690520 72690578 -129637769 - MSTA-int LTR MaLR -105 1546 1486 * 1066 181 33 0 chr4 72690564 72690774 -129637573 - MSTA-int LTR MaLR -1434 217 1 2008 186 65 5 chr4 72690774 72691177 -129637170 - MSTA LTR MaLR 0 428 2 8493 232 41 29 chr4 72691186 72692037 -129636310 - L1PA15 LINE L1 -816 5981 5141 1840 172 3 7 chr4 72692037 72692339 -129636008 - AluJo SINE Alu -11 301 1 8493 232 41 29 chr4 72692339 72692874 -129635473 - L1PA15 LINE L1 -1656 5141 4614 2265 116 0 0 chr4 72692874 72693176 -129635171 - AluSx SINE Alu -8 304 3 8493 232 41 29 chr4 72693176 72694986 -129633361 - L1PA15 LINE L1 -2183 4614 2827 2038 141 3 0 chr4 72694986 72695283 -129633064 - AluSq SINE Alu -15 298 1 8493 232 41 29 chr4 72695283 72695473 -129632874 - L1PA15 LINE L1 -3970 2827 2641 1655 127 0 0 chr4 72695473 72695701 -129632646 + AluSq SINE Alu 84 311 -2 8493 232 41 29 chr4 72695701 72696263 -129632084 - L1PA15 LINE L1 -4156 2641 2087 2179 93 13 16 chr4 72696263 72696575 -129631772 - AluY SINE Alu 0 311 1 8493 232 41 29 chr4 72696575 72698056 -129630291 - L1PA15 LINE L1 -4710 2087 1 30 45 0 0 chr4 72698062 72698106 -129630241 + AT_rich Low_complexity Low_complexity 1 44 0 1003 257 122 88 chr4 72698106 72698487 -129629860 - L1MDa LINE L1 -5499 1041 675 2086 140 3 0 chr4 72698487 72698794 -129629553 - AluSx SINE Alu -2 310 3 1003 257 122 88 chr4 72698794 72699245 -129629102 - L1MDa LINE L1 -5865 675 34 276 390 45 0 chr4 72699265 72699419 -129628928 - L3 LINE CR1 -820 757 597 2930 242 32 2 chr4 72699967 72700595 -129627752 - MER82 DNA MER2_type -6 647 1 502 206 18 119 chr4 72700853 72701071 -129627276 - L1MC5 LINE L1 -35 7926 7731 1877 132 0 69 chr4 72701224 72701528 -129626819 - AluSq SINE Alu -30 283 1 22 35 0 0 chr4 72702981 72703010 -129625337 + AT_rich Low_complexity Low_complexity 1 29 0 585 279 53 26 chr4 72703404 72703594 -129624753 + MIR SINE MIR 3 197 -65 273 335 189 0 chr4 72703810 72703974 -129624373 - MIR SINE MIR -48 214 20 254 286 29 38 chr4 72706904 72707009 -129621338 + L2 LINE L2 3163 3266 -6 372 286 131 12 chr4 72707076 72707244 -129621103 + MIR SINE MIR 57 244 -18 213 308 0 39 chr4 72707548 72707626 -129620721 + L2 LINE L2 3017 3091 -181 3271 205 42 21 chr4 72707639 72708396 -129619951 - L1MD2 LINE L1 -16 6343 5571 293 306 33 50 chr4 72708483 72708604 -129619743 + L2 LINE L2 3190 3308 -5 267 373 36 0 chr4 72709040 72709150 -129619197 - L3 LINE CR1 -939 638 525 * 353 299 52 37 chr4 72709136 72709270 -129619077 + L2 LINE L2 1012 1147 -2167 3062 164 45 19 chr4 72709295 72709910 -129618437 - L1MA9 LINE L1 -5 6307 5677 418 85 17 0 chr4 72709910 72709969 -129618378 - MER47A DNA MER2_type -235 131 72 330 252 52 44 chr4 72710009 72710259 -129618088 + L1M4 LINE L1 3167 3418 -2728 399 222 127 8 chr4 72710274 72710400 -129617947 - L1M4 LINE L1 -3326 2820 2680 3848 139 28 10 chr4 72710400 72711085 -129617262 - Tigger3(Golem) DNA MER2_type -1 3028 2332 7780 99 7 16 chr4 72711085 72712681 -129615666 + L1P3 LINE L1 709 2298 -4163 3164 173 47 2 chr4 72712675 72713246 -129615101 - L1P LINE L1 -5545 601 5 * 4996 121 9 54 chr4 72713249 72714101 -129614246 + L1PA13 LINE L1 5339 6152 -9 221 273 45 11 chr4 72716292 72716380 -129611967 - MIR SINE MIR -26 236 146 286 348 101 30 chr4 72716400 72716667 -129611680 + L2 LINE L2 2569 2854 -460 2103 228 53 48 chr4 72719526 72720368 -129607979 - L1M4 LINE L1 -587 5591 4683 577 279 0 8 chr4 72720368 72720497 -129607850 - FLAM_A SINE Alu -5 128 1 2103 228 53 48 chr4 72720497 72720726 -129607621 - L1M4 LINE L1 -1495 4683 4457 3419 185 48 6 chr4 72720726 72721408 -129606939 + MER50 LTR ERV1 1 711 -23 693 241 81 19 chr4 72721447 72721767 -129606580 - L1M4 LINE L1 -1712 4434 4095 1119 8 75 0 chr4 72721793 72721926 -129606421 - AluYb8 SINE Alu -8 310 168 754 265 33 7 chr4 72721926 72722198 -129606149 - L1M4 LINE L1 -2120 4026 3748 695 221 70 74 chr4 72722198 72722456 -129605891 + MER4A LTR ERV1 1 257 -407 1284 206 19 3 chr4 72722648 72722973 -129605374 - L1M4 LINE L1 -2609 3537 3208 435 237 18 18 chr4 72722973 72723087 -129605260 + MER58B DNA MER1_type 210 323 -18 3367 237 38 14 chr4 72723318 72724735 -129603612 - L1P4 LINE L1 -537 5629 4139 63 57 0 0 chr4 72724768 72724873 -129603474 + AT_rich Low_complexity Low_complexity 1 105 0 463 315 35 30 chr4 72724972 72725175 -129603172 - MIR SINE MIR -57 205 2 24 0 0 0 chr4 72725236 72725260 -129603087 + AT_rich Low_complexity Low_complexity 1 24 0 300 241 95 34 chr4 72725295 72725495 -129602852 - MLT1F LTR MaLR -5 537 281 271 268 0 0 chr4 72725626 72725697 -129602650 + GA-rich Low_complexity Low_complexity 1 71 0 278 358 75 0 chr4 72725716 72725850 -129602497 - MLT1F LTR MaLR -437 153 10 43 35 0 0 chr4 72725964 72726021 -129602326 + AT_rich Low_complexity Low_complexity 1 57 0 31 26 0 0 chr4 72726170 72726208 -129602139 + AT_rich Low_complexity Low_complexity 1 38 0 227 271 0 0 chr4 72726509 72726568 -129601779 - L1MC/D LINE L1 -2144 5664 5606 1632 92 4 0 chr4 72726671 72726898 -129601449 - L1P4 LINE L1 -345 5818 5591 1469 73 99 103 chr4 72726895 72727168 -129601179 + L1PA13 LINE L1 5889 6160 -3 * 332 242 92 13 chr4 72727230 72727383 -129600964 - L1MC/D LINE L1 -753 5393 5229 456 269 17 57 chr4 72728847 72729022 -129599325 - LTR16C LTR ERVL -14 477 310 2158 212 24 96 chr4 72729394 72729583 -129598764 + LTR9 LTR ERV1 1 202 -410 4288 79 5 0 chr4 72729583 72730152 -129598195 + L1PA7 LINE L1 5583 6154 0 2158 212 24 96 chr4 72730152 72730619 -129597728 + LTR9 LTR ERV1 202 610 -2 27 29 0 0 chr4 72730629 72730663 -129597684 + AT_rich Low_complexity Low_complexity 1 34 0 39271 83 11 1 chr4 72730663 72732081 -129596266 - L1PA8 LINE L1 -3 6169 4767 234 62 0 0 chr4 72732081 72732113 -129596234 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 39271 83 11 1 chr4 72732113 72736807 -129591540 - L1PA8 LINE L1 -1405 4767 1 201 162 0 0 chr4 72737022 72737059 -129591288 + T-rich Low_complexity Low_complexity 1 37 0 1133 54 7 0 chr4 72737165 72737312 -129591035 - L1PA4 LINE L1 -3 6152 6005 1239 238 7 23 chr4 72738141 72738444 -129589903 - AluJb SINE Alu -14 298 1 485 315 99 40 chr4 72738483 72738911 -129589436 + L2 LINE L2 2616 3063 -250 280 271 131 8 chr4 72739130 72739252 -129589095 - L1ME3A LINE L1 -146 6024 5888 263 330 6 6 chr4 72739287 72739469 -129588878 - L1ME3A LINE L1 -359 5803 5622 30 0 0 0 chr4 72739507 72739537 -129588810 + AT_rich Low_complexity Low_complexity 1 30 0 302 276 8 16 chr4 72739569 72739692 -129588655 - L1M4 LINE L1 -3325 2821 2700 1798 160 7 7 chr4 72739696 72739989 -129588358 - AluSx SINE Alu -17 295 3 294 260 21 10 chr4 72740026 72740122 -129588225 + (CATA)n Simple_repeat Simple_repeat 3 99 0 2223 94 13 16 chr4 72740234 72740542 -129587805 - AluSc SINE Alu 0 309 3 5087 123 5 14 chr4 72740550 72740565 -129587782 - L1P LINE L1 -1160 4986 4972 5786 107 3 3 chr4 72740565 72741962 -129586385 - L1PA8 LINE L1 -9 6163 4752 5087 123 5 14 chr4 72741962 72742788 -129585559 - L1P LINE L1 -1174 4972 4153 24 0 0 0 chr4 72742818 72742842 -129585505 + AT_rich Low_complexity Low_complexity 1 24 0 2669 241 67 14 chr4 72743077 72744041 -129584306 + L1MB8 LINE L1 5144 6161 -17 23 33 0 0 chr4 72744053 72744083 -129584264 + AT_rich Low_complexity Low_complexity 1 30 0 29 70 0 0 chr4 72744180 72744237 -129584110 + AT_rich Low_complexity Low_complexity 1 57 0 50 18 0 0 chr4 72744946 72745003 -129583344 + AT_rich Low_complexity Low_complexity 1 57 0 460 133 100 11 chr4 72745850 72745940 -129582407 + MER4A LTR ERV1 1 98 -566 1710 137 0 87 chr4 72745992 72746313 -129582034 + MER4A LTR ERV1 372 664 0 2339 123 74 27 chr4 72746316 72746812 -129581535 + MER4A-int LTR ERV1 1 585 -6013 313 153 14 56 chr4 72746852 72746924 -129581423 + MER4A-int LTR ERV1 736 804 -5794 225 0 0 0 chr4 72746946 72746971 -129581376 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1169 242 45 42 chr4 72747019 72747374 -129580973 + MER4A-int LTR ERV1 1845 2200 -4131 5314 126 91 14 chr4 72747389 72748305 -129580042 + MER4B-int LTR ERV1 200 1185 -5573 3838 94 55 48 chr4 72748303 72749046 -129579301 + MER4B-int LTR ERV1 1748 2495 -4103 * 391 229 162 0 chr4 72749046 72749151 -129579196 - LTR8 LTR ERV1 -434 257 136 314 224 41 20 chr4 72749152 72749250 -129579097 + MER4A-int LTR ERV1 3533 3632 -2966 13652 116 57 13 chr4 72749253 72751564 -129576783 + MER4A-int LTR ERV1 4173 6584 -14 253 156 0 0 chr4 72751571 72751616 -129576731 + MER4A LTR ERV1 1 45 -619 347 82 20 0 chr4 72751637 72751686 -129576661 + MER4A LTR ERV1 261 310 -354 379 85 0 17 chr4 72751735 72751794 -129576553 + MER4A LTR ERV1 607 664 0 27 0 0 0 chr4 72751922 72751949 -129576398 + AT_rich Low_complexity Low_complexity 1 27 0 200 268 0 0 chr4 72753737 72753778 -129574569 + (TG)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr4 72753851 72753873 -129574474 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 72753964 72753986 -129574361 + AT_rich Low_complexity Low_complexity 1 22 0 222 211 0 0 chr4 72754674 72754712 -129573635 + polypurine Low_complexity Low_complexity 3 40 0 23 0 0 0 chr4 72754945 72754968 -129573379 + AT_rich Low_complexity Low_complexity 1 23 0 2048 130 3 0 chr4 72754980 72755272 -129573075 - AluSg SINE Alu -17 293 1 1744 109 0 21 chr4 72756182 72756421 -129571926 + AluSq SINE Alu 10 243 -70 275 282 17 26 chr4 72756827 72756944 -129571403 - MIR SINE MIR -1 261 146 2159 115 0 0 chr4 72757159 72757455 -129570892 - AluSx SINE Alu -16 296 1 1697 160 6 46 chr4 72757559 72757884 -129570463 - AluJb SINE Alu 0 312 1 269 277 95 29 chr4 72758046 72758183 -129570164 + L2 LINE L2 3168 3313 0 26 74 0 0 chr4 72758722 72758776 -129569571 + AT_rich Low_complexity Low_complexity 1 54 0 1909 138 32 43 chr4 72758899 72759275 -129569072 + THE1C LTR MaLR 1 372 -3 28 29 0 0 chr4 72759535 72759570 -129568777 + AT_rich Low_complexity Low_complexity 1 35 0 666 214 86 39 chr4 72761436 72761670 -129566677 - L1MB8 LINE L1 -2 6176 5932 1040 274 67 21 chr4 72761704 72762135 -129566212 + L1PBa LINE L1 6 456 -6407 2358 116 30 52 chr4 72762149 72762553 -129565794 + MER48 LTR ERV1 4 398 0 34045 121 31 8 chr4 72762553 72767880 -129560467 + HERVH48 LTR ERV1 1 5450 -1204 225 0 0 0 chr4 72767880 72767905 -129560442 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 41406 61 1 5 chr4 72767908 72774071 -129554276 - L1PA4 LINE L1 0 6155 18 2576 256 48 18 chr4 72774074 72775921 -129552426 - L1 LINE L1 -3006 3842 1945 425 99 0 14 chr4 72775948 72776019 -129552328 - L1MA3 LINE L1 -1 6304 6235 5803 163 42 17 chr4 72776028 72778029 -129550318 + L1MA1 LINE L1 4256 6298 -4 223 290 14 0 chr4 72779207 72779276 -129549071 - MIR SINE MIR -7 255 186 201 352 92 14 chr4 72779793 72779935 -129548412 + L2 LINE L2 3159 3311 -2 243 0 0 0 chr4 72780175 72780202 -129548145 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 1823 140 88 26 chr4 72781651 72781994 -129546353 - THE1B LTR MaLR 0 364 1 4221 134 3 5 chr4 72781994 72782607 -129545740 - THE1B-int LTR MaLR 0 1580 969 1180 132 116 0 chr4 72782610 72782800 -129545547 - THE1B-int LTR MaLR -870 710 499 2787 212 55 46 chr4 72783125 72783865 -129544482 - L1MB8 LINE L1 -16 6973 6218 5535 158 14 10 chr4 72783865 72784830 -129543517 + LTR5 LTR ERVK 1 969 0 2787 212 55 46 chr4 72784830 72785538 -129542809 - L1MB8 LINE L1 -771 6218 5518 186 43 0 0 chr4 72785538 72785561 -129542786 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1251 209 0 20 chr4 72785564 72785817 -129542530 - AluJo SINE Alu -31 281 34 2054 295 71 16 chr4 72785817 72787035 -129541312 - L1MB8 LINE L1 -1436 5521 4238 554 304 27 11 chr4 72787041 72787225 -129541122 - L1MB8 LINE L1 -6570 289 103 1935 183 12 17 chr4 72787428 72787773 -129540574 + MER61A LTR ERV1 1 343 0 243 0 0 0 chr4 72787780 72787807 -129540540 + (CA)n Simple_repeat Simple_repeat 2 28 0 11301 190 48 12 chr4 72787827 72788870 -129539477 + Tigger1 DNA MER2_type 24 1029 -1389 2206 85 43 0 chr4 72788870 72789152 -129539195 - AluY SINE Alu -15 296 3 11301 190 48 12 chr4 72789152 72790044 -129538303 + Tigger1 DNA MER2_type 1029 2057 -361 4919 125 4 0 chr4 72790044 72790795 -129537552 + L1PA11 LINE L1 5413 6166 -8 11301 190 48 12 chr4 72790795 72791170 -129537177 + Tigger1 DNA MER2_type 2057 2417 -1 4929 223 30 37 chr4 72791184 72793166 -129535181 - L1MB1 LINE L1 -22 6146 3988 4029 179 50 69 chr4 72793166 72794258 -129534089 + MER11C LTR ERVK 1 1071 0 4929 223 30 37 chr4 72794258 72794442 -129533905 - L1MB1 LINE L1 -2180 3988 3804 1433 222 3 10 chr4 72795593 72795886 -129532461 - AluJb SINE Alu -11 301 11 594 330 77 45 chr4 72795919 72796372 -129531975 + L2 LINE L2 2595 3063 -250 303 303 58 33 chr4 72796546 72796957 -129531390 - L1ME3 LINE L1 -75 6087 5622 310 297 21 21 chr4 72797013 72797205 -129531142 - L1MB1 LINE L1 -3279 2867 2676 271 200 12 12 chr4 72797256 72797336 -129531011 + (TA)n Simple_repeat Simple_repeat 1 80 0 2367 260 60 16 chr4 72797657 72798652 -129529695 + L1MB8 LINE L1 5126 6162 -16 221 358 48 36 chr4 72799394 72799559 -129528788 - L2 LINE L2 -188 3084 2918 2228 102 3 0 chr4 72799736 72800031 -129528316 + AluSq SINE Alu 1 296 -17 191 340 21 11 chr4 72800555 72800649 -129527698 - MIR3 SINE MIR 0 208 114 2107 104 0 4 chr4 72801147 72801427 -129526920 - AluSx SINE Alu 0 312 34 198 0 0 0 chr4 72803301 72803323 -129525024 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2215 109 0 3 chr4 72803706 72804008 -129524339 + AluSc SINE Alu 1 301 -8 3108 124 78 90 chr4 72804681 72805231 -129523116 - MER4A LTR ERV1 0 664 122 237 33 0 0 chr4 72805231 72805261 -129523086 + (CAA)n Simple_repeat Simple_repeat 2 31 0 3108 124 78 90 chr4 72805261 72805380 -129522967 - MER4A LTR ERV1 -542 122 3 856 138 63 0 chr4 72805862 72806021 -129522326 - L1PA16 LINE L1 -119 6047 5879 447 84 24 12 chr4 72806122 72806205 -129522142 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 2578 276 43 15 chr4 72806486 72807422 -129520925 - L1MC4a LINE L1 -243 7565 6604 254 333 21 0 chr4 72809797 72809893 -129518454 + Charlie2 DNA MER1_type 225 322 -2460 1009 256 71 49 chr4 72809925 72810396 -129517951 + MER21-int LTR ERV1 1162 4533 -2225 563 193 8 0 chr4 72810478 72810597 -129517750 + MER21-int LTR ERV1 4539 4658 -2100 859 222 22 11 chr4 72810703 72810883 -129517464 + MER21-int LTR ERV1 1673 1854 -2337 3252 121 2 0 chr4 72810888 72811342 -129517005 + L1PA4 LINE L1 3 457 -5689 859 95 0 0 chr4 72811340 72811456 -129516891 - L1P LINE L1 -5564 582 467 * 8303 136 270 13 chr4 72811448 72812154 -129516193 + L1PA4 LINE L1 2834 3357 -2806 7264 39 11 0 chr4 72812154 72813219 -129515128 + L1PA4 LINE L1 5081 6155 0 8303 136 270 13 chr4 72813219 72814496 -129513851 + L1PA4 LINE L1 3357 4304 -1859 796 108 0 0 chr4 72814496 72814607 -129513740 + L1PA7 LINE L1 6037 6147 -7 8303 136 270 13 chr4 72814607 72814769 -129513578 + L1PA4 LINE L1 4304 5565 -598 1625 194 80 24 chr4 72814845 72815221 -129513126 - LTR1B LTR ERV1 0 826 430 633 148 0 9 chr4 72815222 72815365 -129512982 - AluSg/x SINE Alu 0 312 199 1187 219 11 23 chr4 72815366 72815854 -129512493 - LTR1 LTR ERV1 -385 441 7 3326 218 56 22 chr4 72815974 72816892 -129511455 - L1ME1 LINE L1 -5 6161 5227 2915 172 4 21 chr4 72816895 72817454 -129510893 - L1PB3 LINE L1 -1 6153 5605 1938 148 7 13 chr4 72817454 72817759 -129510588 - AluSq SINE Alu -10 303 1 6268 236 16 22 chr4 72817759 72819508 -129508839 - L1PB3 LINE L1 -1669 4477 2740 1439 259 27 56 chr4 72819501 72820092 -129508255 - L1ME1 LINE L1 -1852 4294 3721 * 2086 144 11 11 chr4 72820095 72820448 -129507899 - THE1A LTR MaLR 0 355 3 10856 129 2 1 chr4 72820450 72822027 -129506320 - THE1A-int LTR MaLR 0 1580 1 1527 149 7 36 chr4 72822029 72822091 -129506256 - THE1A LTR MaLR -2 353 291 2358 100 0 0 chr4 72822091 72822400 -129505947 + AluY SINE Alu 1 309 -2 1527 149 7 36 chr4 72822400 72822613 -129505734 - THE1A LTR MaLR -64 291 86 515 247 90 24 chr4 72822629 72822884 -129505463 - L1 LINE L1 -2674 3654 3383 749 224 35 0 chr4 72822903 72823077 -129505270 - MER61E LTR ERV1 -51 518 339 477 211 21 0 chr4 72823306 72823401 -129504946 - LTR25 LTR ERV1 -438 356 260 3152 248 72 21 chr4 72823603 72825209 -129503138 - L1 LINE L1 -2928 3400 1720 1128 163 10 19 chr4 72825215 72825508 -129502839 - MER61A LTR ERV1 -5 338 2 3963 131 17 18 chr4 72825509 72826487 -129501860 - MER61A-int LTR ERV1 0 5217 4191 1377 129 46 8 chr4 72826591 72826831 -129501516 + MER61-int LTR ERV1 1411 1659 -3558 1496 201 19 26 chr4 72826831 72827144 -129501203 - MER61A LTR ERV1 -32 311 1 4427 246 71 18 chr4 72827159 72828502 -129499845 - L1 LINE L1 -4065 1263 265 2036 178 54 7 chr4 72828502 72828907 -129499440 - MSTA LTR MaLR -2 426 3 4427 246 71 18 chr4 72828907 72829187 -129499160 - L1 LINE L1 -5063 265 1 761 315 49 11 chr4 72829195 72829729 -129498618 - L1M4 LINE L1 -876 5270 4717 436 88 0 0 chr4 72829763 72829820 -129498527 + AluSc SINE Alu 230 286 -23 327 247 12 12 chr4 72829821 72829906 -129498441 + L1MC4 LINE L1 6619 6703 -1339 314 267 11 11 chr4 72829932 72830022 -129498325 - L1MC4 LINE L1 -1339 6703 6614 502 278 99 56 chr4 72830025 72830236 -129498111 - L1M4 LINE L1 -1467 4679 4479 2105 132 0 3 chr4 72830236 72830532 -129497815 - AluSg SINE Alu -15 295 1 502 278 99 56 chr4 72830532 72830915 -129497432 - L1M4 LINE L1 -1667 4479 4059 1060 303 57 42 chr4 72830992 72831395 -129496952 - MLT2B3 LTR ERVL -46 508 100 4588 202 20 14 chr4 72831407 72832902 -129495445 + L1PA15 LINE L1 4610 6109 -56 506 170 0 40 chr4 72832931 72833031 -129495316 - MLT2B3 LTR ERVL -419 96 1 354 351 54 11 chr4 72833125 72833498 -129494849 - L1M4 LINE L1 -1809 4337 3949 682 270 101 40 chr4 72833553 72834343 -129494004 - L1M4 LINE L1 -2724 3422 2585 732 294 17 4 chr4 72834376 72834607 -129493740 + L1P3 LINE L1 1 234 -5641 2652 145 2 14 chr4 72834650 72835084 -129493263 - LTR3 LTR ERVK 0 429 1 6463 256 5 2 chr4 72835087 72836542 -129491805 - HERVK3 LTR ERVK -2 7241 5783 1075 138 22 24 chr4 72836523 72836551 -129491796 - MER61-int LTR ERV1 -2813 2404 2377 * 3797 51 2 0 chr4 72836551 72837021 -129491326 - L1PA5 LINE L1 -2 6152 5682 1075 138 22 24 chr4 72837021 72837288 -129491059 - MER61-int LTR ERV1 -2840 2377 2015 479 70 14 0 chr4 72837310 72837381 -129490966 - L1PA4 LINE L1 -4 6151 6080 16801 167 32 16 chr4 72837388 72840365 -129487982 - HERVK3 LTR ERVK -1455 5788 2764 2788 127 12 3 chr4 72840373 72840870 -129487477 - HERVK3 LTR ERVK -6638 605 68 2437 151 26 14 chr4 72840887 72841311 -129487036 - LTR3 LTR ERVK 0 429 1 10356 214 46 17 chr4 72841321 72841710 -129486637 + L1P3 LINE L1 1190 1566 -4895 1800 167 3 3 chr4 72841710 72841997 -129486350 + AluSc SINE Alu 1 287 -22 10356 214 46 17 chr4 72841997 72844340 -129484007 + L1P3 LINE L1 1566 4066 -2395 189 74 0 0 chr4 72844340 72844367 -129483980 + (CAA)n Simple_repeat Simple_repeat 1 27 0 10356 214 46 17 chr4 72844367 72845913 -129482434 + L1P3 LINE L1 4066 5566 -895 810 312 55 32 chr4 72846312 72846591 -129481756 + LTR16A LTR ERVL 19 311 -139 1046 243 75 20 chr4 72846591 72846937 -129481410 - MLT1A1 LTR MaLR 0 365 1 810 312 55 32 chr4 72846937 72847058 -129481289 + LTR16A LTR ERVL 311 428 -22 454 345 23 6 chr4 72847085 72847259 -129481088 + HERV16 LTR ERVL 5 181 -4815 2113 214 9 2 chr4 72847458 72847924 -129480423 - MER41D LTR ERV1 0 557 2 435 274 65 0 chr4 72848136 72848260 -129480087 + HERV16 LTR ERVL 589 720 -4276 2238 303 27 30 chr4 72848284 72849337 -129479010 - L1PA13 LINE L1 -3362 3435 2387 815 217 11 0 chr4 72849335 72849519 -129478828 + L1PA12 LINE L1 2824 3009 -4572 * 737 381 26 17 chr4 72850041 72850463 -129477884 - L1PA13 LINE L1 -6361 426 1 * 4127 247 83 13 chr4 72850450 72850744 -129477603 - L1M LINE L1 -783 5363 5091 2399 154 0 0 chr4 72850744 72851108 -129477239 - THE1B LTR MaLR 0 364 1 9077 132 16 60 chr4 72851108 72852762 -129475585 - THE1B-int LTR MaLR 0 1580 1 2373 144 11 0 chr4 72852762 72853122 -129475225 - THE1B LTR MaLR 0 364 1 4127 247 83 13 chr4 72853122 72854179 -129474168 - L1M LINE L1 -1054 5092 3943 2604 274 11 4 chr4 72854173 72854961 -129473386 + L1P LINE L1 3151 3944 -2202 * 418 372 14 14 chr4 72854967 72855182 -129473165 + HERV16 LTR ERVL 976 1190 -3806 392 337 36 10 chr4 72855430 72855626 -129472721 + HERV16 LTR ERVL 1608 1808 -3188 322 323 53 32 chr4 72855870 72856059 -129472288 - MLT1C LTR MaLR -49 418 226 264 262 0 0 chr4 72856103 72856164 -129472183 - FLAM SINE Alu -2 131 71 529 304 52 4 chr4 72856395 72856625 -129471722 + HERV16 LTR ERVL 2255 2495 -2501 472 250 42 0 chr4 72856626 72856770 -129471577 + L1 LINE L1 4534 4683 -1463 1879 161 11 73 chr4 72857802 72858268 -129470079 - L1MA10 LINE L1 -4 6330 5894 * 12240 56 0 0 chr4 72858264 72860590 -129467757 - L1PA5 LINE L1 -3 6151 3826 25912 94 2 4 chr4 72860690 72864309 -129464038 - L1PA5 LINE L1 -2533 3613 2 417 184 0 0 chr4 72864310 72864386 -129463961 - L1MA10 LINE L1 -406 5906 5831 377 278 40 0 chr4 72864392 72864543 -129463804 - MER31-int LTR ERV1 -1159 3777 3621 183 129 0 0 chr4 72864704 72864735 -129463612 + (TA)n Simple_repeat Simple_repeat 2 32 0 212 183 0 17 chr4 72865002 72865062 -129463285 + GA-rich Low_complexity Low_complexity 2 60 0 193 333 25 12 chr4 72865077 72865158 -129463189 + L2 LINE L2 3187 3268 -4 24 0 0 0 chr4 72865331 72865355 -129462992 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr4 72866445 72866483 -129461864 + AT_rich Low_complexity Low_complexity 1 38 0 189 0 0 0 chr4 72867159 72867180 -129461167 + (CA)n Simple_repeat Simple_repeat 2 22 0 1007 221 112 27 chr4 72867717 72868011 -129460336 + MLT1B LTR MaLR 3 321 -69 1331 64 6 0 chr4 72868021 72868194 -129460153 + L1PA8A LINE L1 5384 5557 -574 22 0 0 0 chr4 72868289 72868311 -129460036 + AT_rich Low_complexity Low_complexity 1 22 0 2967 207 52 68 chr4 72868418 72868966 -129459381 - L1MB2 LINE L1 -5 6402 5877 180 0 0 0 chr4 72868966 72868986 -129459361 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2967 207 52 68 chr4 72868986 72869406 -129458941 - L1MB2 LINE L1 -530 5877 5452 605 227 191 20 chr4 72869414 72869441 -129458906 - L1MB2 LINE L1 -2816 3566 3545 1523 194 23 23 chr4 72869441 72869751 -129458596 - AluSq SINE Alu -3 310 1 605 227 191 20 chr4 72869751 72870027 -129458320 - L1MB2 LINE L1 -2837 3545 3211 249 157 0 96 chr4 72870033 72870076 -129458271 - L1MB2 LINE L1 -4137 2247 2214 1286 149 40 5 chr4 72870076 72870298 -129458049 - MER30 DNA MER1_type 0 230 1 249 157 0 96 chr4 72870298 72870337 -129458010 - L1MB2 LINE L1 -4170 2214 2173 197 56 37 56 chr4 72870359 72870413 -129457934 + (TAAAA)n Simple_repeat Simple_repeat 5 57 0 68 13 0 0 chr4 72870413 72870488 -129457859 + AT_rich Low_complexity Low_complexity 1 75 0 340 263 80 52 chr4 72870488 72870701 -129457646 - L1MB2 LINE L1 -4214 2170 1952 1711 273 40 66 chr4 72870717 72871924 -129456423 - L1MB2 LINE L1 -4534 1779 801 207 0 0 0 chr4 72871959 72871982 -129456365 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1332 248 72 84 chr4 72872173 72873335 -129455012 - L1M1 LINE L1 -4447 3118 2208 617 385 39 21 chr4 72873746 72874214 -129454133 - L1M1 LINE L1 -5804 1692 1217 22 35 0 0 chr4 72874799 72874828 -129453519 + AT_rich Low_complexity Low_complexity 1 29 0 22 80 0 0 chr4 72875096 72875146 -129453201 + AT_rich Low_complexity Low_complexity 1 50 0 23 33 0 0 chr4 72876154 72876184 -129452163 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr4 72876438 72876468 -129451879 + AT_rich Low_complexity Low_complexity 1 30 0 310 379 75 47 chr4 72879608 72880009 -129448338 + L1MB2 LINE L1 176 587 -5726 1799 268 41 54 chr4 72880150 72881348 -129446999 + L1MB2 LINE L1 913 1832 -4534 394 242 76 48 chr4 72881400 72881624 -129446723 + L1MB2 LINE L1 1979 2214 -4170 1306 167 36 0 chr4 72881624 72881846 -129446501 + MER30 DNA MER1_type 1 230 0 394 242 76 48 chr4 72881846 72881910 -129446437 + L1MB2 LINE L1 2214 2275 -4109 * 802 201 130 41 chr4 72881900 72882178 -129446169 + L1MB2 LINE L1 3215 3530 -2852 1411 208 7 13 chr4 72882178 72882481 -129445866 + AluJb SINE Alu 3 303 -9 802 201 130 41 chr4 72882481 72882541 -129445806 + L1MB2 LINE L1 3530 3583 -2799 * 3503 198 39 33 chr4 72882537 72882801 -129445546 + L1MB2 LINE L1 5452 5713 -694 288 53 0 0 chr4 72882801 72882839 -129445508 + (CA)n Simple_repeat Simple_repeat 1 38 0 3503 198 39 33 chr4 72882839 72883514 -129444833 + L1MB2 LINE L1 5713 6402 -5 23 0 0 0 chr4 72883544 72883567 -129444780 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 72883642 72883664 -129444683 + AT_rich Low_complexity Low_complexity 1 22 0 8586 150 7 10 chr4 72883759 72885430 -129442917 - L1PA8A LINE L1 -574 5557 3898 3652 127 2 0 chr4 72885437 72885966 -129442381 + L1PA8A LINE L1 5581 6110 -21 712 41 8 41 chr4 72885980 72886101 -129442246 + (GAAA)n Simple_repeat Simple_repeat 2 118 0 1069 224 89 46 chr4 72886464 72886834 -129441513 - MLT1B LTR MaLR -2 388 3 198 118 0 0 chr4 72887368 72887402 -129440945 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 233 148 0 19 chr4 72889564 72889618 -129438729 + (TC)n Simple_repeat Simple_repeat 2 54 0 426 261 38 6 chr4 72890075 72890232 -129438115 + HERV30 LTR ERV1 3621 3782 -1154 2210 183 32 16 chr4 72890233 72890669 -129437678 + L1MA10 LINE L1 5831 6277 -57 188 86 29 0 chr4 72890669 72890704 -129437643 + (TA)n Simple_repeat Simple_repeat 1 36 0 2210 183 32 16 chr4 72890704 72890759 -129437588 + L1MA10 LINE L1 6277 6330 -4 20649 97 3 1 chr4 72891278 72894046 -129434301 + HERV30 LTR ERV1 688 3462 -4795 6155 123 14 4 chr4 72894039 72894944 -129433403 + HERV30 LTR ERV1 7344 8257 0 * 4974 81 26 4 chr4 72894945 72895649 -129432698 + LTR30 LTR ERV1 4 722 0 2275 252 22 11 chr4 72895649 72896340 -129432007 + L1M4 LINE L1 4315 4997 -1149 2459 154 0 0 chr4 72896340 72896704 -129431643 + THE1B LTR MaLR 1 364 0 8914 140 17 49 chr4 72896704 72898336 -129430011 + THE1B-int LTR MaLR 1 1580 0 2336 159 0 0 chr4 72898336 72898700 -129429647 + THE1B LTR MaLR 1 364 0 2275 252 22 11 chr4 72898700 72898732 -129429615 + L1M4 LINE L1 4996 5048 -1098 862 220 0 0 chr4 72898754 72898968 -129429379 + L1M4 LINE L1 5153 5366 -780 740 380 24 19 chr4 72898980 72899404 -129428943 + L1PA13 LINE L1 1 426 -6361 636 224 22 6 chr4 72899926 72900105 -129428242 - L1PA12 LINE L1 -4576 3005 2824 2210 293 30 37 chr4 72900111 72901103 -129427244 + L1PA13 LINE L1 2395 3379 -3418 454 340 54 48 chr4 72901184 72901519 -129426828 - HERV16 LTR ERVL -4276 720 384 2040 213 13 2 chr4 72901520 72901984 -129426363 + MER41D LTR ERV1 2 557 0 489 355 43 21 chr4 72901984 72902359 -129425988 - HERV16 LTR ERVL -4609 387 5 881 306 52 38 chr4 72902371 72902507 -129425840 - LTR16A LTR ERVL -8 442 309 959 257 75 20 chr4 72902507 72902853 -129425494 + MLT1A1 LTR MaLR 1 365 0 881 306 52 38 chr4 72902853 72903135 -129425212 - LTR16A LTR ERVL -141 309 18 1164 242 32 0 chr4 72904828 72905138 -129423209 + L1M4 LINE L1 5499 5818 -360 1247 234 65 39 chr4 72905142 72905603 -129422744 + L1MB8 LINE L1 5706 6178 0 21 57 0 0 chr4 72907431 72907466 -129420881 + AT_rich Low_complexity Low_complexity 1 35 0 213 333 65 20 chr4 72908420 72908573 -129419774 - L2 LINE L2 -2 3311 3152 180 408 19 0 chr4 72908939 72909042 -129419305 - L2 LINE L2 -641 2673 2569 317 252 45 18 chr4 72909062 72909173 -129419174 + MIR SINE MIR 146 259 -3 24 96 0 0 chr4 72910714 72910787 -129417560 + AT_rich Low_complexity Low_complexity 1 73 0 23 0 0 0 chr4 72911626 72911649 -129416698 + AT_rich Low_complexity Low_complexity 1 23 0 232 222 0 0 chr4 72911995 72912040 -129416307 + (CA)n Simple_repeat Simple_repeat 2 46 0 1889 137 0 3 chr4 72913199 72913483 -129414864 + AluSg SINE Alu 5 287 -23 23 0 0 0 chr4 72913640 72913663 -129414684 + AT_rich Low_complexity Low_complexity 1 23 0 45 19 0 0 chr4 72915251 72915303 -129413044 + AT_rich Low_complexity Low_complexity 1 52 0 4991 146 4 1 chr4 72915304 72916122 -129412225 - L1PA13 LINE L1 -1 6162 5343 33 66 0 0 chr4 72917735 72917796 -129410551 + AT_rich Low_complexity Low_complexity 1 61 0 25 31 0 0 chr4 72917835 72917867 -129410480 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr4 72917902 72917924 -129410423 + AT_rich Low_complexity Low_complexity 1 22 0 909 260 47 47 chr4 72917947 72918370 -129409977 - L1MB8 LINE L1 -17 6161 5739 310 278 74 31 chr4 72918416 72918578 -129409769 + L1ME3A LINE L1 2103 2271 -4125 215 188 21 21 chr4 72918664 72918712 -129409635 + (CATATA)n Simple_repeat Simple_repeat 4 51 0 390 280 60 47 chr4 72918718 72918950 -129409397 + L1ME3A LINE L1 2746 2980 -3235 563 315 132 15 chr4 72918951 72919360 -129408987 + L1ME3A LINE L1 5675 6131 -108 26 88 0 0 chr4 72919441 72919509 -129408838 + AT_rich Low_complexity Low_complexity 1 68 0 453 359 84 24 chr4 72919571 72919993 -129408354 - L2 LINE L2 -255 3058 2623 762 113 69 25 chr4 72920125 72920284 -129408063 + L1MA2 LINE L1 6139 6304 0 1144 241 4 0 chr4 72921127 72921355 -129406992 - AluJo SINE Alu -73 239 11 478 236 79 61 chr4 72922550 72922715 -129405632 + LTR41 LTR ERVL 5 172 -601 351 169 65 0 chr4 72922832 72922909 -129405438 + MER97a DNA MER1_type? 254 335 -559 21 36 0 0 chr4 72923275 72923303 -129405044 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 72923536 72923557 -129404790 + AT_rich Low_complexity Low_complexity 1 21 0 307 307 80 63 chr4 72924674 72924961 -129403386 + L1M3b LINE L1 3 294 -5987 387 0 0 0 chr4 72925014 72925057 -129403290 + (CA)n Simple_repeat Simple_repeat 2 44 0 1194 151 0 0 chr4 72925067 72925246 -129403101 - AluSx SINE Alu -133 179 1 228 252 40 33 chr4 72925875 72926026 -129402321 + L1ME4a LINE L1 5900 6051 -70 1790 147 3 30 chr4 72926065 72926365 -129401982 - AluSx SINE Alu -20 292 1 22 0 0 0 chr4 72926754 72926776 -129401571 + AT_rich Low_complexity Low_complexity 1 22 0 35 54 0 0 chr4 72927649 72927705 -129400642 + AT_rich Low_complexity Low_complexity 1 56 0 369 302 54 5 chr4 72927823 72928018 -129400329 + MLT1G3 LTR MaLR 1 218 -228 651 279 21 42 chr4 72928420 72928660 -129399687 + MIR SINE MIR 2 236 -26 628 256 15 40 chr4 72928891 72929090 -129399257 - L1MB5 LINE L1 -1 6173 5980 210 71 0 0 chr4 72929146 72929174 -129399173 + (TAAAA)n Simple_repeat Simple_repeat 5 32 0 2093 242 52 39 chr4 72929312 72929948 -129398399 + MER73 LTR ERVL 1 644 0 1704 321 77 31 chr4 72929990 72930883 -129397464 + L1M4b LINE L1 12 945 -5914 760 276 108 28 chr4 72930911 72931732 -129396615 + L1M4b LINE L1 2479 3332 -3625 600 224 0 81 chr4 72931776 72931950 -129396397 - AluJo SINE Alu -141 171 12 376 118 73 0 chr4 72932175 72932243 -129396104 - L1PA11 LINE L1 0 6174 6102 3021 145 4 0 chr4 72932255 72932717 -129395630 - HERV9 LTR ERV1 -7877 522 59 678 144 0 0 chr4 72932738 72932842 -129395505 - LTR12 LTR ERV1 -130 584 481 327 263 10 0 chr4 72932843 72932942 -129395405 - LTR30 LTR ERV1 -79 643 544 1110 176 54 97 chr4 72932942 72933357 -129394990 - LTR12 LTR ERV1 -437 1983 4 516 274 183 8 chr4 72933357 72933598 -129394749 - L1 LINE L1 -1873 4273 3991 869 230 42 13 chr4 72933825 72934064 -129394283 + PABL_B LTR ERV1 422 667 0 428 252 27 7 chr4 72934065 72934212 -129394135 - L1 LINE L1 -2153 3993 3844 1518 117 8 35 chr4 72934215 72934472 -129393875 - MER52C LTR ERV1 0 1278 1029 7431 153 48 3 chr4 72934472 72935667 -129392680 + THE1-int LTR MaLR 333 1580 0 850 97 0 0 chr4 72935716 72935830 -129392517 - AluY SINE Alu -197 114 1 388 183 42 0 chr4 72935830 72935901 -129392446 - THE1C-int LTR MaLR -1407 173 100 1076 89 0 6 chr4 72935901 72936058 -129392289 - THE1C-int LTR MaLR -1424 156 1 2346 147 5 3 chr4 72936058 72936432 -129391915 - THE1C LTR MaLR 0 375 1 3588 199 17 2 chr4 72936573 72937217 -129391130 + L1PA12 LINE L1 6 659 -6922 1501 316 30 38 chr4 72937168 72937775 -129390572 - L1M4b LINE L1 -6245 614 13 * 2503 148 15 25 chr4 72937856 72938330 -129390017 - L1PA13 LINE L1 0 6163 5695 1009 243 47 0 chr4 72938348 72938643 -129389704 + L1PA7 LINE L1 5050 5352 -799 6212 75 7 0 chr4 72938840 72939655 -129388692 + L1PA7 LINE L1 5329 6149 -5 893 175 16 37 chr4 72939677 72939866 -129388481 + AluJo SINE Alu 112 296 -16 296 202 49 87 chr4 72939874 72940057 -129388290 + L1ME2 LINE L1 5018 5193 -953 278 284 123 39 chr4 72940041 72940245 -129388102 + L1MA9 LINE L1 5724 5944 -245 * 748 202 188 44 chr4 72940135 72940407 -129387940 + L1ME2 LINE L1 5835 6145 -19 230 269 31 62 chr4 72941471 72941631 -129386716 + L1MA9 LINE L1 6117 6271 -41 6281 33 0 0 chr4 72943577 72944330 -129384017 - L1P LINE L1 -1604 4542 3790 2186 158 90 59 chr4 72945137 72945648 -129382699 - LTR1 LTR ERV1 -190 595 69 26361 108 8 13 chr4 72945894 72945907 -129382440 + L1P LINE L1 776 788 -5358 278 50 25 0 chr4 72945907 72945947 -129382400 + (TA)n Simple_repeat Simple_repeat 1 41 0 26361 108 8 13 chr4 72945947 72949949 -129378398 + L1P LINE L1 788 4773 -1373 24 77 0 0 chr4 72950789 72950841 -129377506 + AT_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr4 72954170 72954199 -129374148 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 72954849 72954870 -129373477 + AT_rich Low_complexity Low_complexity 1 21 0 583 385 34 16 chr4 72954873 72955367 -129372980 + L1 LINE L1 1 503 -5778 259 355 28 17 chr4 72955758 72956048 -129372299 + L1 LINE L1 1125 1417 -4854 * 1317 230 49 83 chr4 72956040 72956366 -129371981 + L1 LINE L1 3198 3534 -2816 934 263 50 39 chr4 72956366 72956647 -129371700 + AluJo SINE Alu 4 287 -15 1317 230 49 83 chr4 72956647 72957028 -129371319 + L1 LINE L1 3534 3881 -2469 342 123 0 0 chr4 72957034 72957091 -129371256 + (TA)n Simple_repeat Simple_repeat 1 57 0 8275 156 49 54 chr4 72957209 72958942 -129369405 + MER4B-int LTR ERV1 5034 6758 0 1013 187 14 9 chr4 72958942 72959156 -129369191 + MER4B LTR ERV1 1 215 -395 1579 179 9 37 chr4 72959174 72959498 -129368849 + MER4E LTR ERV1 462 776 -3 2575 194 33 12 chr4 72959500 72960009 -129368338 + MER4E-int LTR ERV1 1 520 -6238 367 197 91 45 chr4 72960462 72960594 -129367753 + MER97c DNA MER1_type? 814 951 -139 325 319 42 32 chr4 72961642 72961858 -129366489 + MER67A LTR ERV1 326 543 0 471 123 0 0 chr4 72961909 72961982 -129366365 + L1PA11 LINE L1 6101 6173 -1 23 0 0 0 chr4 72961982 72962005 -129366342 + AT_rich Low_complexity Low_complexity 1 23 0 205 314 138 31 chr4 72963042 72963201 -129365146 + MIR SINE MIR 12 187 -75 394 250 0 30 chr4 72964084 72964216 -129364131 + L1MA9 LINE L1 6155 6282 -30 259 393 14 21 chr4 72964982 72965127 -129363220 - L2 LINE L2 -189 3083 2940 6685 72 2 0 chr4 72965403 72966926 -129361421 + L1PA6 LINE L1 4615 6138 -16 432 126 35 0 chr4 72966955 72967042 -129361305 + (TA)n Simple_repeat Simple_repeat 1 90 0 381 214 0 22 chr4 72967053 72967142 -129361205 + L1MA6 LINE L1 4759 4845 -1301 1870 241 24 21 chr4 72967145 72967568 -129360779 + MSTB1 LTR MaLR 1 424 -8 2266 220 24 3 chr4 72967577 72968505 -129359842 + L1MA6 LINE L1 4845 5793 -498 336 246 37 0 chr4 72968528 72968553 -129359794 + (TA)n Simple_repeat Simple_repeat 1 24 -115 189 0 0 0 chr4 72968553 72968574 -129359773 + (TC)n Simple_repeat Simple_repeat 2 22 0 336 246 37 0 chr4 72968574 72968682 -129359665 + (TA)n Simple_repeat Simple_repeat 24 139 0 321 26 0 0 chr4 72968738 72968776 -129359571 + (TA)n Simple_repeat Simple_repeat 2 39 0 1928 203 55 17 chr4 72968791 72969290 -129359057 + L1MA6 LINE L1 5782 6300 0 258 56 0 0 chr4 72969432 72969468 -129358879 + (TG)n Simple_repeat Simple_repeat 2 37 0 30 0 0 0 chr4 72969627 72969657 -129358690 + AT_rich Low_complexity Low_complexity 1 30 0 3552 251 39 6 chr4 72969820 72970671 -129357676 - MER54A LTR ERVL 0 901 23 766 129 14 0 chr4 72971851 72971991 -129356356 + GA-rich Low_complexity Low_complexity 2 143 0 9960 185 68 40 chr4 72972977 72974673 -129353674 - Tigger1 DNA MER2_type 0 2418 772 849 198 6 41 chr4 72974673 72974845 -129353502 - FRAM SINE Alu 0 166 1 9960 185 68 40 chr4 72974845 72975024 -129353323 - Tigger1 DNA MER2_type -1646 772 600 1991 206 9 23 chr4 72975024 72975462 -129352885 - MSTB1 LTR MaLR 0 432 1 9960 185 68 40 chr4 72975462 72975935 -129352412 - Tigger1 DNA MER2_type -1818 600 1 21 36 0 0 chr4 72976044 72976072 -129352275 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr4 72977222 72977266 -129351081 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr4 72978712 72978734 -129349613 + AT_rich Low_complexity Low_complexity 1 22 0 2117 171 11 102 chr4 72979228 72979767 -129348580 + MER4B LTR ERV1 85 574 -36 3034 196 40 23 chr4 72979798 72980400 -129347947 + MER4B-int LTR ERV1 1 612 -6146 242 240 0 141 chr4 72980400 72980521 -129347826 + MER61E LTR ERV1 1 104 -465 789 312 81 19 chr4 72980605 72980955 -129347392 + MER61E LTR ERV1 86 635 -144 1397 47 0 0 chr4 72981005 72981177 -129347170 + LTR10C LTR ERV1 1 172 -419 1317 127 0 79 chr4 72981277 72981506 -129346841 + LTR10C LTR ERV1 379 589 -2 1036 209 34 17 chr4 72981511 72981745 -129346602 + HUERS-P1 LTR ERV1 608 845 -5913 1191 202 129 3 chr4 72981751 72982038 -129346309 + MSTA LTR MaLR 95 417 -11 754 133 0 0 chr4 72982105 72982225 -129346122 + MSTA-int LTR MaLR 14 133 -1518 2286 172 9 9 chr4 72982229 72982653 -129345694 + MSTA-int LTR MaLR 1228 1651 0 1656 202 102 20 chr4 72982653 72982700 -129345647 + MSTA LTR MaLR 1 43 -385 2187 111 80 9 chr4 72982700 72983050 -129345297 + THE1C LTR MaLR 1 375 0 1656 202 102 20 chr4 72983050 72983393 -129344954 + MSTA LTR MaLR 43 423 -5 2269 160 38 66 chr4 72983394 72984450 -129343897 + HUERS-P1 LTR ERV1 855 1974 -4784 3605 159 44 36 chr4 72984550 72985024 -129343323 + HUERS-P1 LTR ERV1 2141 2627 -4131 2847 135 53 10 chr4 72985024 72985514 -129342833 - MER9 LTR ERVK 0 511 1 3605 159 44 36 chr4 72985514 72985875 -129342472 + HUERS-P1 LTR ERV1 2627 2983 -3775 1858 155 0 14 chr4 72985875 72986171 -129342176 + AluY SINE Alu 1 292 -19 414 0 0 0 chr4 72986179 72986225 -129342122 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 5440 150 25 11 chr4 72986225 72986576 -129341771 + HUERS-P1 LTR ERV1 3071 3416 -3342 279 54 0 0 chr4 72986576 72986613 -129341734 + (CA)n Simple_repeat Simple_repeat 2 38 0 5440 150 25 11 chr4 72986613 72987181 -129341166 + HUERS-P1 LTR ERV1 3416 4003 -2755 1839 179 37 29 chr4 72987183 72987564 -129340783 + HUERS-P1 LTR ERV1 4241 4624 -2134 * 3586 212 65 25 chr4 72987560 72988642 -129339705 + HUERS-P1 LTR ERV1 4456 5778 -547 851 184 56 39 chr4 72988742 72988976 -129339371 + HUERS-P1 LTR ERV1 5989 6226 -105 592 275 136 21 chr4 72988981 72989217 -129339130 + HUERS-P1 LTR ERV1 5994 6256 -7 457 195 8 32 chr4 72989254 72989377 -129338970 + LTR38B LTR ERV1 1 120 -490 1420 239 28 28 chr4 72989962 72990264 -129338083 + MSTB LTR MaLR 75 379 -47 895 217 118 92 chr4 72990264 72990679 -129337668 - MSTA LTR MaLR -2 426 1 1420 239 28 28 chr4 72990679 72990728 -129337619 + MSTB LTR MaLR 378 426 0 2549 236 8 7 chr4 72990728 72991338 -129337009 + MSTB-int LTR MaLR 1 611 -1040 1993 173 24 11 chr4 72991400 72991770 -129336577 - THE1C LTR MaLR 0 375 1 488 114 13 13 chr4 72991773 72991852 -129336495 - THE1C-int LTR MaLR -4 1576 1498 681 235 56 6 chr4 72991852 72992014 -129336333 + MSTB LTR MaLR 253 422 -4 298 293 9 9 chr4 72992018 72992124 -129336223 + L1P LINE L1 4995 5100 -1046 1474 222 35 32 chr4 72992130 72992504 -129335843 - THE1C LTR MaLR 0 375 1 7578 229 20 39 chr4 72992507 72994113 -129334234 - THE1C-int LTR MaLR -5 1575 1 254 191 0 0 chr4 72994113 72994160 -129334187 - THE1C LTR MaLR 0 428 382 1828 165 54 20 chr4 72994161 72994513 -129333834 + THE1B LTR MaLR 1 364 0 1701 90 90 0 chr4 72994526 72994792 -129333555 + THE1B-int LTR MaLR 97 386 -1194 221 219 0 0 chr4 72995125 72995166 -129333181 + GA-rich Low_complexity Low_complexity 2 42 0 21 0 0 0 chr4 72995427 72995448 -129332899 + AT_rich Low_complexity Low_complexity 1 21 0 679 204 12 58 chr4 72996709 72996881 -129331466 - AluJo SINE Alu -108 204 41 1813 226 89 16 chr4 72996882 72997395 -129330952 - MER52C LTR ERV1 -294 984 486 956 278 30 20 chr4 72997414 72997814 -129330533 - L1M4 LINE L1 -2305 4652 4249 419 298 36 24 chr4 72997833 72998001 -129330346 - L1M4 LINE L1 -6572 287 118 21 0 0 0 chr4 72998009 72998030 -129330317 + AT_rich Low_complexity Low_complexity 1 21 0 1902 203 15 12 chr4 72998171 72998571 -129329776 + MER57A LTR ERV1 1 401 -2 236 30 30 0 chr4 72998630 72998663 -129329684 + (CA)n Simple_repeat Simple_repeat 2 35 0 10594 195 55 12 chr4 72998663 73000977 -129327370 + Tigger1 DNA MER2_type 4 2417 -1 571 156 9 9 chr4 73000989 73001098 -129327249 - L1MB1 LINE L1 -16 6152 6044 6623 178 22 48 chr4 73001099 73002472 -129325875 + THE1C-int LTR MaLR 242 1578 -2 1525 186 60 33 chr4 73002475 73002840 -129325507 + THE1C LTR MaLR 1 375 0 2796 219 77 26 chr4 73002840 73003762 -129324585 - L1 LINE L1 -1373 4773 3805 22 0 0 0 chr4 73004148 73004170 -129324177 + AT_rich Low_complexity Low_complexity 1 22 0 999 283 11 3 chr4 73004986 73005269 -129323078 - AluJo SINE Alu -15 287 3 462 288 28 106 chr4 73005308 73005478 -129322869 + L2 LINE L2 2616 2798 -515 1127 167 4 22 chr4 73005478 73005706 -129322641 + L1PA13 LINE L1 5939 6162 -1 462 288 28 106 chr4 73005706 73006072 -129322275 + L2 LINE L2 2798 3104 -209 25 75 0 0 chr4 73006322 73006375 -129321972 + AT_rich Low_complexity Low_complexity 1 53 0 448 280 46 29 chr4 73006383 73006622 -129321725 - L1ME3A LINE L1 -325 5845 5603 469 261 37 14 chr4 73006639 73006854 -129321493 - L1ME3A LINE L1 -3249 2897 2678 657 137 10 0 chr4 73007390 73007492 -129320855 + MER4B-int LTR ERV1 510 612 -6146 309 210 0 126 chr4 73007492 73007611 -129320736 + MER61E LTR ERV1 1 104 -465 1030 211 71 88 chr4 73007660 73008044 -129320303 + MER61E LTR ERV1 92 388 -181 4307 81 5 12 chr4 73008105 73008698 -129319649 + LTR10C LTR ERV1 1 589 -2 1058 205 27 46 chr4 73008703 73008962 -129319385 + MER4B-int LTR ERV1 608 861 -5897 824 227 149 19 chr4 73008962 73009231 -129319116 + MSTA LTR MaLR 114 417 -11 766 125 0 0 chr4 73009298 73009418 -129318929 + MSTA-int LTR MaLR 14 133 -1518 2164 178 28 2 chr4 73009422 73009820 -129318527 + MSTA-int LTR MaLR 1228 1635 -16 1751 179 104 21 chr4 73009821 73009862 -129318485 + MSTA LTR MaLR 7 43 -385 2074 120 80 11 chr4 73009862 73010213 -129318134 + THE1C LTR MaLR 1 375 0 1751 179 104 21 chr4 73010213 73010556 -129317791 + MSTA LTR MaLR 43 423 -5 7814 179 70 70 chr4 73010557 73012329 -129316018 + MER4B-int LTR ERV1 855 2629 -4129 2889 119 62 12 chr4 73012329 73012816 -129315531 - MER9 LTR ERVK 0 511 1 7814 179 70 70 chr4 73012816 73013199 -129315148 + MER4B-int LTR ERV1 2628 3010 -3748 1431 112 0 14 chr4 73013199 73013414 -129314933 - L1PA6 LINE L1 0 6154 5943 244 250 0 22 chr4 73013437 73013529 -129314818 - L1MC4 LINE L1 -1339 6703 6614 230 250 23 0 chr4 73013457 73013545 -129314802 + L1MC4 LINE L1 6614 6703 -1339 * 202 0 146 0 chr4 73013545 73013593 -129314754 + (ATATG)n Simple_repeat Simple_repeat 2 56 0 309 229 127 38 chr4 73013595 73013752 -129314595 + L1MC4 LINE L1 6604 6774 -1268 8300 160 47 11 chr4 73013796 73014042 -129314305 + MER4B-int LTR ERV1 3176 3412 -3346 459 35 0 0 chr4 73014042 73014099 -129314248 + (CA)n Simple_repeat Simple_repeat 2 58 0 8300 160 47 11 chr4 73014099 73015449 -129312898 + MER4B-int LTR ERV1 3412 4867 -1891 707 193 0 15 chr4 73016024 73016180 -129312167 - FLAM_C SINE Alu 0 154 1 1800 112 0 4 chr4 73017003 73017254 -129311093 - AluSq SINE Alu -20 293 44 4046 21 0 0 chr4 73018951 73019417 -129308930 + L1P LINE L1 3956 4421 -1725 * 4754 160 19 0 chr4 73019416 73020260 -129308087 + L1MA1 LINE L1 5254 6113 -189 429 20 0 0 chr4 73020260 73020310 -129308037 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 4964 114 51 3 chr4 73020317 73021063 -129307284 + L1P3 LINE L1 818 1599 -4862 1310 82 0 0 chr4 73021064 73021246 -129307101 - L1P LINE L1 -2696 3450 3269 4521 211 12 6 chr4 73021246 73022096 -129306251 - ERVL-B3 LTR ERVL -1027 4737 3883 4076 253 54 17 chr4 73022092 73023202 -129305145 - ERVL-B3 LTR ERVL -4612 1152 2 * 1903 246 34 56 chr4 73023203 73023759 -129304588 - MLT2B3 LTR ERVL 0 554 11 1960 157 0 0 chr4 73024211 73024511 -129303836 - AluSg SINE Alu -7 303 4 263 243 40 22 chr4 73025472 73025581 -129302766 - MLT1E3 LTR MaLR -2 622 439 24 77 0 0 chr4 73027046 73027098 -129301249 + AT_rich Low_complexity Low_complexity 1 52 0 1929 298 50 40 chr4 73027104 73027903 -129300444 - L1M4b LINE L1 -6041 818 12 4411 149 31 20 chr4 73027991 73028775 -129299572 - L1PA13 LINE L1 0 6163 5372 1278 214 22 0 chr4 73028776 73029072 -129299275 + L1P LINE L1 5051 5352 -799 595 210 74 46 chr4 73029199 73029408 -129298939 + L1MB5 LINE L1 5956 6174 0 24 0 0 0 chr4 73029608 73029632 -129298715 + AT_rich Low_complexity Low_complexity 1 24 0 530 284 71 34 chr4 73029636 73029875 -129298472 - MIR SINE MIR -13 249 2 255 61 0 0 chr4 73030225 73030258 -129298089 + (TG)n Simple_repeat Simple_repeat 2 34 0 332 219 31 0 chr4 73030324 73030452 -129297895 + (TA)n Simple_repeat Simple_repeat 1 132 0 662 181 101 35 chr4 73030533 73030732 -129297615 - L1M3 LINE L1 -704 5703 5492 401 249 107 29 chr4 73030709 73030990 -129297357 - L1M3 LINE L1 -2848 3534 3232 * 275 266 112 11 chr4 73031023 73031211 -129297136 - L1M3 LINE L1 -4148 2236 2030 775 280 57 55 chr4 73031243 73031733 -129296614 - L1M3 LINE L1 -4460 1924 1434 255 317 112 37 chr4 73031743 73031904 -129296443 - MER5B DNA MER1_type -5 173 1 28 86 0 0 chr4 73033655 73033725 -129294622 + AT_rich Low_complexity Low_complexity 1 70 0 395 368 57 42 chr4 73035747 73036222 -129292125 + L1 LINE L1 3 484 -5797 294 258 118 35 chr4 73036634 73036863 -129291484 + L1 LINE L1 1126 1373 -4908 * 1817 230 71 39 chr4 73036859 73037551 -129290796 + L1 LINE L1 3377 4090 -2260 619 192 76 23 chr4 73037640 73037812 -129290535 + L1MB4 LINE L1 6000 6180 0 21 0 0 0 chr4 73038028 73038049 -129290298 + AT_rich Low_complexity Low_complexity 1 21 0 576 268 51 43 chr4 73038058 73038293 -129290054 - MIR SINE MIR -24 238 2 23 78 0 0 chr4 73038358 73038409 -129289938 + AT_rich Low_complexity Low_complexity 1 51 0 425 236 80 40 chr4 73038409 73038617 -129289730 - MLT1F LTR MaLR -4 538 277 230 239 0 0 chr4 73038741 73038787 -129289560 + GA-rich Low_complexity Low_complexity 1 46 0 203 81 54 0 chr4 73038802 73038839 -129289508 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 362 327 100 0 chr4 73038850 73039000 -129289347 - MLT1F LTR MaLR -423 167 3 23 54 0 0 chr4 73039141 73039178 -129289169 + AT_rich Low_complexity Low_complexity 1 37 0 1694 153 0 0 chr4 73039345 73039594 -129288753 + AluSq SINE Alu 6 254 -59 1337 246 0 0 chr4 73040062 73040330 -129288017 - AluJo SINE Alu -35 277 10 475 236 79 61 chr4 73041530 73041695 -129286652 + LTR41 LTR ERVL 5 172 -601 427 269 95 18 chr4 73041808 73042110 -129286237 + MER97c DNA MER1_type? 254 605 -485 336 288 34 24 chr4 73042563 73042768 -129285579 + MER97c DNA MER1_type? 828 1034 -56 351 278 56 21 chr4 73043806 73043950 -129284397 + MER67A LTR ERV1 395 543 0 397 164 0 0 chr4 73044000 73044073 -129284274 + L1PA11 LINE L1 6101 6173 -1 22 0 0 0 chr4 73045183 73045205 -129283142 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr4 73045771 73045798 -129282549 + AT_rich Low_complexity Low_complexity 1 27 0 375 275 18 24 chr4 73046171 73046338 -129282009 + L1MA9 LINE L1 6118 6283 -29 210 323 58 88 chr4 73047107 73047367 -129280980 - L2 LINE L2 -186 3086 2835 485 170 21 0 chr4 73047941 73048035 -129280312 + L1PA12 LINE L1 5923 6018 -150 7143 99 11 22 chr4 73048037 73049103 -129279244 + MER11C LTR ERVK 3 1057 -14 909 104 35 0 chr4 73049142 73049286 -129279061 + L1PA13 LINE L1 6013 6161 -2 1776 162 0 7 chr4 73049357 73049653 -129278694 + AluSg1 SINE Alu 3 296 -13 204 40 0 0 chr4 73049943 73049968 -129278379 + (TTA)n Simple_repeat Simple_repeat 3 27 0 7142 43 1 9 chr4 73049968 73051374 -129276973 - L1PA4 LINE L1 -18 6137 4737 387 157 0 0 chr4 73051529 73051599 -129276748 + CT-rich Low_complexity Low_complexity 3 72 0 1240 217 3 56 chr4 73051607 73051911 -129276436 - AluJo SINE Alu -24 288 1 909 167 83 6 chr4 73052738 73052894 -129275453 - AluSq SINE Alu -21 292 125 254 143 20 0 chr4 73053141 73053190 -129275157 + GA-rich Low_complexity Low_complexity 2 51 0 341 326 104 7 chr4 73053234 73053378 -129274969 - MLT1G LTR MaLR -423 167 10 23 0 0 0 chr4 73053858 73053881 -129274466 + AT_rich Low_complexity Low_complexity 1 23 0 302 317 19 0 chr4 73054925 73055029 -129273318 + Charlie2 DNA MER1_type 209 314 -2548 468 244 102 8 chr4 73055038 73055165 -129273182 + LTR41 LTR ERVL 3 141 -632 382 294 34 7 chr4 73055325 73055471 -129272876 + MER97a DNA MER1_type? 254 403 -491 256 206 63 16 chr4 73055549 73055612 -129272735 + MER97c DNA MER1_type? 523 588 -502 270 213 126 58 chr4 73056033 73056240 -129272107 + MER97c DNA MER1_type? 814 1034 -56 264 304 52 22 chr4 73057283 73057418 -129270929 + MER67A LTR ERV1 401 539 -4 504 86 0 0 chr4 73057495 73057565 -129270782 + L1PA11 LINE L1 6101 6170 -4 236 123 55 0 chr4 73057578 73057651 -129270696 + (TA)n Simple_repeat Simple_repeat 2 78 0 25178 207 59 33 chr4 73058372 73064431 -129263916 - HERV3 LTR ERV1 -2203 6223 4 583 275 40 40 chr4 73064434 73064710 -129263637 - LTR4 LTR ERV1 -3 593 318 205 191 0 0 chr4 73065071 73065113 -129263234 + T-rich Low_complexity Low_complexity 3 44 0 1167 248 206 39 chr4 73065492 73066012 -129262335 - L1MB4 LINE L1 -8 6983 6377 297 0 0 0 chr4 73066110 73066143 -129262204 + (TG)n Simple_repeat Simple_repeat 2 34 0 1205 237 21 3 chr4 73066462 73066795 -129261552 - L1MB4 LINE L1 -751 6206 5868 613 286 18 32 chr4 73066814 73067034 -129261313 - MIR SINE MIR -44 218 2 22 70 0 0 chr4 73067098 73067141 -129261206 + AT_rich Low_complexity Low_complexity 1 43 0 273 256 80 48 chr4 73067153 73067278 -129261069 - MLT1G1 LTR MaLR 0 555 427 341 336 78 18 chr4 73067516 73067697 -129260650 - MLT1G1 LTR MaLR -362 233 2 30 45 0 0 chr4 73067746 73067790 -129260557 + AT_rich Low_complexity Low_complexity 1 44 0 265 200 9 91 chr4 73068869 73068979 -129259368 + L1MC4 LINE L1 6603 6703 -1339 884 244 3 44 chr4 73069542 73069857 -129258490 - L1PB1 LINE L1 -1490 5467 5166 5069 180 34 8 chr4 73069865 73071302 -129257045 + L1PB1 LINE L1 5482 6957 -5 261 217 245 28 chr4 73071356 73071462 -129256885 - MIR3 SINE MIR -73 135 7 2014 123 0 7 chr4 73072607 73072929 -129255418 - AluSx SINE Alu 0 320 1 954 129 18 0 chr4 73073155 73073318 -129255029 - L1MA2 LINE L1 0 6304 6139 618 355 53 22 chr4 73073436 73073878 -129254469 + L2 LINE L2 2616 3063 -250 22 80 0 0 chr4 73073937 73073987 -129254360 + AT_rich Low_complexity Low_complexity 1 50 0 394 355 46 27 chr4 73073997 73074259 -129254088 - L1ME3A LINE L1 -23 6147 5881 489 303 12 29 chr4 73074263 73074418 -129253929 - L1ME3A LINE L1 -328 5842 5691 3528 167 118 15 chr4 73074418 73075167 -129253180 - LTR1B LTR ERV1 0 826 1 489 303 12 29 chr4 73075167 73075252 -129253095 - L1ME3A LINE L1 -479 5691 5606 622 159 0 0 chr4 73075306 73075413 -129252934 - AluSp/q SINE Alu -7 306 200 1265 131 11 0 chr4 73075413 73075596 -129252751 + AluSx SINE Alu 9 193 -119 252 212 89 55 chr4 73075605 73075751 -129252596 - L1MB4 LINE L1 -3264 3693 3543 206 170 0 21 chr4 73075818 73075865 -129252482 + (TA)n Simple_repeat Simple_repeat 2 47 0 2092 224 58 29 chr4 73076208 73076972 -129251375 + L1MB8 LINE L1 5137 5917 -261 252 247 24 12 chr4 73076975 73077060 -129251287 + L1MB8 LINE L1 6074 6159 -19 200 194 0 0 chr4 73077960 73077996 -129250351 + A-rich Low_complexity Low_complexity 4 39 0 4690 145 15 17 chr4 73078899 73079507 -129248840 + L1PA13 LINE L1 5346 5953 -210 3327 100 9 63 chr4 73079507 73080047 -129248300 + MER9 LTR ERVK 1 511 0 4690 145 15 17 chr4 73080047 73080258 -129248089 + L1PA13 LINE L1 5953 6163 0 24 32 0 0 chr4 73080279 73080310 -129248037 + AT_rich Low_complexity Low_complexity 1 31 0 1160 151 36 0 chr4 73082288 73082480 -129245867 - MER30 DNA MER1_type -30 200 2 2682 14 0 0 chr4 73082480 73082777 -129245570 + AluY SINE Alu 1 297 -14 23 68 0 0 chr4 73082837 73082881 -129245466 + AT_rich Low_complexity Low_complexity 1 44 0 181 98 49 0 chr4 73082881 73082922 -129245425 + A-rich Low_complexity Low_complexity 2 44 0 44 56 0 0 chr4 73082925 73082997 -129245350 + AT_rich Low_complexity Low_complexity 1 72 0 366 271 82 34 chr4 73082997 73083204 -129245143 - L1MB4 LINE L1 -4205 2754 2538 575 268 58 63 chr4 73083238 73083648 -129244699 - L1MB4 LINE L1 -4552 2407 2000 425 117 0 0 chr4 73083794 73083854 -129244493 - AluS SINE Alu -211 101 42 356 265 0 31 chr4 73084167 73084265 -129244082 + L1MC4 LINE L1 6609 6703 -1339 1297 153 85 0 chr4 73085796 73086032 -129242315 + MER75 DNA T2_type 259 514 0 468 275 0 0 chr4 73086035 73086144 -129242203 - FLAM_A SINE Alu -26 116 8 300 323 21 0 chr4 73086164 73086260 -129242087 - L1MB4 LINE L1 -6752 107 10 2445 228 53 19 chr4 73086300 73086923 -129241424 - MER73 LTR ERVL 0 644 1 548 265 14 50 chr4 73087111 73087330 -129241017 + L1MB5 LINE L1 5974 6184 0 569 288 27 36 chr4 73087569 73087791 -129240556 - MIR SINE MIR -41 221 2 327 270 72 44 chr4 73087909 73088092 -129240255 - MLT1H1 LTR MaLR 0 555 357 206 274 0 16 chr4 73088241 73088303 -129240044 + GA-rich Low_complexity Low_complexity 2 62 0 315 330 100 3 chr4 73088323 73088458 -129239889 - MLT1G1 LTR MaLR -411 177 1 216 0 0 0 chr4 73089632 73089656 -129238691 + (TA)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr4 73089689 73089711 -129238636 + AT_rich Low_complexity Low_complexity 1 22 0 907 228 4 4 chr4 73090090 73090331 -129238016 - L1 LINE L1 -1490 4656 4416 192 158 0 0 chr4 73090348 73090386 -129237961 + T-rich Low_complexity Low_complexity 1 38 0 2684 201 38 19 chr4 73090437 73091531 -129236816 + L1PB1 LINE L1 4670 5779 -372 291 190 0 0 chr4 73091533 73091591 -129236756 + (CA)n Simple_repeat Simple_repeat 2 59 0 2132 157 5 5 chr4 73091595 73091965 -129236382 + L1PB1 LINE L1 5782 6151 0 788 113 69 25 chr4 73093307 73093466 -129234881 - L1MA2 LINE L1 0 6304 6139 483 364 77 21 chr4 73093598 73094024 -129234323 + L2 LINE L2 2623 3061 -252 26 88 0 0 chr4 73094083 73094151 -129234196 + AT_rich Low_complexity Low_complexity 1 68 0 556 315 130 12 chr4 73094232 73094641 -129233706 - L1ME3A LINE L1 -108 6131 5675 235 247 77 50 chr4 73094642 73094824 -129233523 - L1 LINE L1 -3235 2911 2725 387 261 42 55 chr4 73095017 73095182 -129233165 - L1ME3A LINE L1 -4125 2271 2109 2290 250 60 26 chr4 73095335 73096327 -129232020 + L1MB8 LINE L1 5137 6161 -17 25 31 0 0 chr4 73096404 73096436 -129231911 + AT_rich Low_complexity Low_complexity 1 32 0 31 58 0 0 chr4 73096475 73096527 -129231820 + AT_rich Low_complexity Low_complexity 1 52 0 4924 149 2 5 chr4 73098149 73098966 -129229381 + L1PA13 LINE L1 5347 6161 -2 30 0 0 0 chr4 73098970 73099000 -129229347 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 73099150 73099172 -129229175 + AT_rich Low_complexity Low_complexity 1 22 0 234 154 39 0 chr4 73199784 73199836 -129128511 + (TA)n Simple_repeat Simple_repeat 2 55 0 228 342 81 0 chr4 73200380 73200491 -129127856 - L2 LINE L2 -2 3311 3192 223 419 27 11 chr4 73200817 73201003 -129127344 - L2 LINE L2 -557 2757 2569 268 264 47 19 chr4 73201028 73201134 -129127213 + MIR SINE MIR 151 259 -3 30 89 0 0 chr4 73202722 73202801 -129125546 + AT_rich Low_complexity Low_complexity 1 79 0 22 0 0 0 chr4 73203150 73203172 -129125175 + AT_rich Low_complexity Low_complexity 1 22 0 227 244 0 0 chr4 73203944 73203989 -129124358 + (CA)n Simple_repeat Simple_repeat 2 46 0 43 35 0 0 chr4 73205966 73206023 -129122324 + AT_rich Low_complexity Low_complexity 1 57 0 4908 147 4 6 chr4 73206024 73206840 -129121507 - L1PA13 LINE L1 -7 6156 5343 34 72 0 0 chr4 73208449 73208518 -129119829 + AT_rich Low_complexity Low_complexity 1 69 0 25 31 0 0 chr4 73208555 73208587 -129119760 + AT_rich Low_complexity Low_complexity 1 32 0 703 259 62 24 chr4 73208664 73208954 -129119393 - L1MB8 LINE L1 -17 6161 5861 369 313 44 16 chr4 73209062 73209244 -129119103 + L1ME3A LINE L1 2726 2912 -3234 677 298 113 48 chr4 73209261 73209765 -129118582 + L1ME3A LINE L1 5622 6158 -12 369 60 0 143 chr4 73209925 73210009 -129118338 + L1MA2 LINE L1 6233 6304 0 2004 173 6 3 chr4 73211354 73211718 -129116629 - L1PB1 LINE L1 -5 6146 5782 201 147 0 0 chr4 73211724 73211758 -129116589 + (TG)n Simple_repeat Simple_repeat 1 34 0 1199 107 0 0 chr4 73211758 73211926 -129116421 - MER11A LTR ERVK 0 1266 1099 1749 135 4 0 chr4 73211929 73212195 -129116152 + THE1B-int LTR MaLR 1314 1580 0 2187 171 3 0 chr4 73212195 73212558 -129115789 + THE1B LTR MaLR 1 364 0 511 205 16 8 chr4 73212596 73212732 -129115615 + L1MB8 LINE L1 5138 5274 -872 705 384 12 18 chr4 73212877 73213218 -129115129 + L1PA13 LINE L1 1 339 -6448 1101 233 0 0 chr4 73213270 73213485 -129114862 + MER41D LTR ERV1 343 557 0 498 316 36 21 chr4 73213666 73213859 -129114488 - HERV16 LTR ERVL -4796 200 5 244 336 70 0 chr4 73213870 73214008 -129114339 - LTR16A LTR ERVL -3 447 300 961 278 72 17 chr4 73214008 73214354 -129113993 + MLT1A1 LTR MaLR 1 365 0 559 299 58 43 chr4 73214354 73214631 -129113716 - LTR16A LTR ERVL -145 305 25 24 0 0 0 chr4 73216270 73216294 -129112053 + AT_rich Low_complexity Low_complexity 1 24 0 2133 235 48 29 chr4 73216314 73216979 -129111368 + L1MB8 LINE L1 5492 6169 -9 21 71 0 0 chr4 73218813 73218855 -129109492 + AT_rich Low_complexity Low_complexity 1 42 0 234 154 39 0 chr4 73219211 73219263 -129109084 + (TA)n Simple_repeat Simple_repeat 2 55 0 228 342 81 0 chr4 73219807 73219918 -129108429 - L2 LINE L2 -2 3311 3192 197 430 27 11 chr4 73220244 73220430 -129107917 - L2 LINE L2 -557 2757 2569 328 246 45 9 chr4 73220450 73220560 -129107787 + MIR SINE MIR 146 259 -3 21 0 0 0 chr4 73221763 73221784 -129106563 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr4 73222184 73222232 -129106115 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr4 73222582 73222604 -129105743 + AT_rich Low_complexity Low_complexity 1 22 0 227 244 0 0 chr4 73223377 73223422 -129104925 + (CA)n Simple_repeat Simple_repeat 2 46 0 243 0 0 0 chr4 73225021 73225048 -129103299 + (A)n Simple_repeat Simple_repeat 1 27 0 36 40 0 0 chr4 73225419 73225469 -129102878 + AT_rich Low_complexity Low_complexity 1 50 0 4863 152 4 5 chr4 73225470 73226291 -129102056 - L1PA13 LINE L1 -1 6162 5343 34 55 0 0 chr4 73227913 73227968 -129100379 + AT_rich Low_complexity Low_complexity 1 55 0 25 31 0 0 chr4 73228005 73228037 -129100310 + AT_rich Low_complexity Low_complexity 1 32 0 2344 249 65 22 chr4 73228111 73229112 -129099235 - L1MB8 LINE L1 -17 6161 5118 338 303 30 48 chr4 73229249 73229414 -129098933 + L1ME3A LINE L1 2110 2271 -4125 213 211 39 0 chr4 73229498 73229550 -129098797 + (TA)n Simple_repeat Simple_repeat 2 55 0 263 286 44 16 chr4 73229609 73229791 -129098556 + L1ME3A LINE L1 2795 2981 -3234 559 301 170 0 chr4 73229810 73230122 -129098225 + L1ME3A LINE L1 5693 6057 -182 448 356 71 26 chr4 73230417 73230845 -129097502 - L2 LINE L2 -250 3063 2624 960 92 59 7 chr4 73230983 73231135 -129097212 + L1MA2 LINE L1 6145 6304 0 2017 179 3 0 chr4 73232480 73232844 -129095503 - L1PB1 LINE L1 -5 6146 5782 450 53 0 0 chr4 73232863 73232920 -129095427 + (TG)n Simple_repeat Simple_repeat 2 58 0 3631 95 15 24 chr4 73232920 73233999 -129094348 - MER11A LTR ERVK -1 1265 1 2418 208 18 37 chr4 73234018 73235163 -129093184 - L1PB1 LINE L1 -363 5788 4670 996 222 6 48 chr4 73235171 73235486 -129092861 + L1M4 LINE L1 4355 4656 -1490 280 208 52 0 chr4 73236038 73236115 -129092232 + (CATATA)n Simple_repeat Simple_repeat 6 86 0 233 230 118 15 chr4 73236284 73236419 -129091928 + L1M4 LINE L1 5244 5392 -754 21 36 0 0 chr4 73236857 73236885 -129091462 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr4 73236910 73236947 -129091400 + AT_rich Low_complexity Low_complexity 1 37 0 195 186 0 0 chr4 73237421 73237464 -129090883 + CT-rich Low_complexity Low_complexity 2 44 0 9157 40 4 1 chr4 73237469 73239379 -129088968 - L1PA3 LINE L1 0 6155 4239 300 272 31 45 chr4 73239749 73239931 -129088416 + MLT1G LTR MaLR 382 590 0 30 45 0 0 chr4 73239941 73239985 -129088362 + AT_rich Low_complexity Low_complexity 1 44 0 592 276 32 36 chr4 73240046 73240267 -129088080 + MIR SINE MIR 2 221 -41 545 282 38 47 chr4 73240509 73240722 -129087625 - L1MB5 LINE L1 0 6184 5974 2206 225 77 20 chr4 73240893 73241501 -129086846 + MER73 LTR ERVL 1 643 -1 296 333 21 0 chr4 73241541 73241637 -129086710 + L1M4b LINE L1 10 107 -6752 629 202 0 0 chr4 73241657 73241766 -129086581 + FLAM_A SINE Alu 8 116 -26 2533 146 57 2 chr4 73241769 73242209 -129086138 - MER75 DNA T2_type 0 514 51 1566 275 73 38 chr4 73242221 73242770 -129085577 + L1M4b LINE L1 881 1409 -5550 1953 130 17 0 chr4 73242770 73243062 -129085285 + AluSx SINE Alu 1 297 -15 1566 275 73 38 chr4 73243062 73243930 -129084417 + L1M4b LINE L1 1409 2346 -4613 27 49 0 0 chr4 73244070 73244111 -129084236 + AT_rich Low_complexity Low_complexity 1 41 0 182 279 15 15 chr4 73245209 73245277 -129083070 + MIR3 SINE MIR 101 168 -40 1966 119 0 11 chr4 73245297 73245582 -129082765 - AluSg1 SINE Alu -25 284 3 1368 125 30 0 chr4 73245655 73245887 -129082460 - L1PA13 LINE L1 -2 6161 5923 341 248 0 17 chr4 73247443 73247560 -129080787 - L1MA9 LINE L1 -38 6274 6160 27 0 0 0 chr4 73247961 73247988 -129080359 + AT_rich Low_complexity Low_complexity 1 27 0 2351 56 20 0 chr4 73248512 73248814 -129079533 + AluY SINE Alu 1 308 -3 23 54 0 0 chr4 73249317 73249354 -129078993 + GC_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr4 73249389 73249414 -129078933 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr4 73249495 73249516 -129078831 + GC_rich Low_complexity Low_complexity 1 21 0 249 33 0 0 chr4 73249556 73249586 -129078761 + (A)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr4 73250606 73250627 -129077720 + AT_rich Low_complexity Low_complexity 1 21 0 440 137 0 0 chr4 73250787 73250860 -129077487 - L1PA11 LINE L1 -1 6173 6101 347 278 56 21 chr4 73250909 73251053 -129077294 - MER67A LTR ERV1 0 543 395 451 281 56 26 chr4 73252081 73252312 -129076035 - MER97c DNA MER1_type? -39 1051 814 370 282 88 15 chr4 73252747 73253051 -129075296 - MER97b DNA MER1_type? -289 605 254 456 278 90 0 chr4 73253201 73253334 -129075013 - LTR41 LTR ERVL -624 149 5 1459 218 21 0 chr4 73254411 73254695 -129073652 + AluJo SINE Alu 11 300 -12 207 0 0 0 chr4 73255102 73255125 -129073222 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1824 130 0 0 chr4 73255135 73255396 -129072951 - AluSq SINE Alu -52 261 1 23 54 0 0 chr4 73255558 73255595 -129072752 + AT_rich Low_complexity Low_complexity 1 37 0 361 343 89 18 chr4 73255735 73255904 -129072443 + MLT1F LTR MaLR 3 183 -407 201 226 0 0 chr4 73255947 73256000 -129072347 + CT-rich Low_complexity Low_complexity 2 54 0 429 237 85 40 chr4 73256123 73256330 -129072017 + MLT1F LTR MaLR 277 538 -4 22 70 0 0 chr4 73256341 73256384 -129071963 + AT_rich Low_complexity Low_complexity 1 43 0 617 268 43 34 chr4 73256449 73256684 -129071663 + MIR SINE MIR 2 238 -24 21 0 0 0 chr4 73256693 73256714 -129071633 + AT_rich Low_complexity Low_complexity 1 21 0 553 206 111 50 chr4 73256940 73257120 -129071227 - L1MB5 LINE L1 -9 6165 5975 1739 225 86 38 chr4 73257182 73257870 -129070477 - L1 LINE L1 -2253 4097 3377 392 223 138 40 chr4 73257841 73258088 -129070259 - L1 LINE L1 -4885 1396 1126 * 352 377 52 39 chr4 73258506 73258967 -129069380 - L1 LINE L1 -5812 469 3 21 71 0 0 chr4 73259234 73259276 -129069071 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr4 73261013 73261038 -129067309 + AT_rich Low_complexity Low_complexity 1 25 0 5768 66 9 1 chr4 73262188 73262941 -129065406 + L1PA7 LINE L1 5396 6154 0 920 187 16 27 chr4 73262944 73263131 -129065216 + AluJb SINE Alu 112 296 -16 273 239 45 30 chr4 73263139 73263273 -129065074 + L1ME2 LINE L1 5018 5153 -993 698 215 177 48 chr4 73263316 73263674 -129064673 + L1ME2 LINE L1 5728 6145 -19 42 48 0 0 chr4 73264318 73264381 -129063966 + AT_rich Low_complexity Low_complexity 1 63 0 324 248 10 10 chr4 73264785 73264886 -129063461 + L1MA9 LINE L1 6168 6268 -44 1412 218 9 22 chr4 73266782 73267098 -129061249 - AluJo SINE Alu 0 312 1 2092 216 61 21 chr4 73268146 73268716 -129059631 - L1MB2 LINE L1 -10 6161 5569 186 133 0 0 chr4 73268815 73268845 -129059502 + (TG)n Simple_repeat Simple_repeat 2 31 0 249 270 54 0 chr4 73273581 73273655 -129054692 - MIR SINE MIR -114 148 71 2672 131 19 2 chr4 73274381 73274808 -129053539 + MER57B LTR ERV1 1 434 0 3693 161 51 5 chr4 73274808 73275453 -129052894 + MER57B-int LTR ERV1 1 675 -6862 3163 197 40 11 chr4 73275447 73275637 -129052710 + MER57B-int LTR ERV1 288 471 -6260 * 5506 91 27 72 chr4 73275637 73276502 -129051845 - LTR12 LTR ERV1 0 826 1 3163 197 40 11 chr4 73276502 73276962 -129051385 + MER57B-int LTR ERV1 471 1664 -5067 2505 228 23 55 chr4 73276962 73277502 -129050845 - LTR9B LTR ERV1 0 644 88 1672 161 56 0 chr4 73277502 73277787 -129050560 + AluSg SINE Alu 1 301 -9 2505 228 23 55 chr4 73277787 73277812 -129050535 - LTR9B LTR ERV1 -556 88 64 191 88 29 0 chr4 73277812 73277846 -129050501 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1811 129 0 11 chr4 73277851 73278129 -129050218 - AluSg SINE Alu -35 275 1 2505 228 23 55 chr4 73278129 73278215 -129050132 - LTR9B LTR ERV1 -584 60 7 2244 161 41 25 chr4 73278221 73278719 -129049628 + MER57B-int LTR ERV1 648 1959 -2921 310 203 0 0 chr4 73278698 73278757 -129049590 + MER57B-int LTR ERV1 1867 1925 -4021 * 1153 122 33 0 chr4 73278754 73278934 -129049413 + MER57B-int LTR ERV1 6964 7149 -388 617 167 26 18 chr4 73278936 73279050 -129049297 + LTR54B LTR ERV1 6 120 -378 1462 107 128 4 chr4 73279050 73279292 -129049055 + MER57B-int LTR ERV1 7264 7535 -2 2174 171 79 0 chr4 73279293 73279686 -129048661 + MER57B LTR ERV1 1 424 -10 204 67 0 0 chr4 73279710 73279740 -129048607 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 768 243 61 64 chr4 73280225 73280454 -129047893 - MSTD LTR MaLR -12 384 131 1974 123 23 13 chr4 73280454 73280756 -129047591 - AluSq SINE Alu -8 305 1 768 243 61 64 chr4 73280756 73280887 -129047460 - MSTD LTR MaLR -265 131 1 23 78 0 0 chr4 73281229 73281280 -129047067 + AT_rich Low_complexity Low_complexity 1 51 0 820 151 24 0 chr4 73281297 73281423 -129046924 + AluJb SINE Alu 5 133 -179 261 0 0 0 chr4 73281423 73281452 -129046895 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 729 168 16 0 chr4 73281452 73281577 -129046770 + AluJb SINE Alu 118 244 -68 2966 265 40 20 chr4 73281577 73282716 -129045631 - L1M4 LINE L1 -963 5183 4023 782 244 157 32 chr4 73282749 73283113 -129045234 - MSTA LTR MaLR -2 426 7 467 188 257 28 chr4 73283276 73283420 -129044927 - MSTA LTR MaLR -251 177 1 2007 170 11 18 chr4 73283420 73283802 -129044545 - MSTA-int LTR MaLR 0 1580 1202 1417 71 10 0 chr4 73283801 73283998 -129044349 - L1PBa LINE L1 -5093 1770 1572 * 3257 186 87 3 chr4 73283996 73284675 -129043672 - L1PBa LINE L1 -5954 909 174 2492 227 48 24 chr4 73284707 73285336 -129043011 - MER73 LTR ERVL 0 644 1 687 234 25 3 chr4 73285531 73285727 -129042620 + L1MB5 LINE L1 5973 6170 -10 1956 148 7 3 chr4 73285918 73286216 -129042131 - AluSc SINE Alu -10 299 1 22 0 0 0 chr4 73286254 73286276 -129042071 + AT_rich Low_complexity Low_complexity 1 22 0 602 317 18 27 chr4 73286306 73286527 -129041820 - MIR SINE MIR -42 220 2 303 252 101 22 chr4 73286570 73286709 -129041638 - L1M LINE L1 -744 5426 5277 332 112 11 34 chr4 73286936 73287025 -129041322 + (TA)n Simple_repeat Simple_repeat 2 88 0 902 224 25 16 chr4 73287580 73287825 -129040522 - L1 LINE L1 -1490 4656 4410 185 0 40 0 chr4 73287825 73287850 -129040497 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2132 202 6 4 chr4 73287945 73288953 -129039394 + L1PB2 LINE L1 4693 5791 -360 315 0 0 0 chr4 73288963 73288998 -129039349 + (TG)n Simple_repeat Simple_repeat 2 36 0 306 197 42 14 chr4 73289001 73289072 -129039275 - L1MCa LINE L1 -4362 2064 1992 254 95 24 0 chr4 73289110 73289152 -129039195 + (TA)n Simple_repeat Simple_repeat 1 43 0 2005 133 44 9 chr4 73289153 73289492 -129038855 + L1PB2 LINE L1 5801 6151 0 1319 142 12 102 chr4 73290389 73290713 -129037634 + AluSq SINE Alu 1 295 -18 824 154 25 0 chr4 73290958 73291120 -129037227 - L1MA2 LINE L1 0 6304 6139 479 322 106 48 chr4 73291247 73291713 -129036634 + L2 LINE L2 2616 3101 -212 497 311 120 52 chr4 73291768 73292039 -129036308 - L1ME3A LINE L1 -13 6157 5906 1886 124 0 4 chr4 73292039 73292304 -129036043 - AluSg SINE Alu -12 298 35 497 311 120 52 chr4 73292304 73292549 -129035798 - L1ME3A LINE L1 -264 5906 5606 372 304 71 6 chr4 73292550 73292718 -129035629 - L1MEc LINE L1 -3235 2980 2802 363 306 24 47 chr4 73292907 73293077 -129035270 - L1MEc LINE L1 -4122 2274 2109 2498 249 59 28 chr4 73293230 73294221 -129034126 + L1MB8 LINE L1 5137 6159 -19 23 0 0 0 chr4 73294306 73294329 -129034018 + AT_rich Low_complexity Low_complexity 1 23 0 203 388 49 33 chr4 73294982 73295165 -129033182 - L2 LINE L2 -181 3091 2906 1823 157 6 10 chr4 73295181 73295493 -129032854 - AluSx SINE Alu -1 311 1 4412 147 39 17 chr4 73296386 73297190 -129031157 + L1PA13 LINE L1 5343 6163 0 31 58 0 0 chr4 73297191 73297243 -129031104 + AT_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr4 73297332 73297361 -129030986 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr4 73297827 73297852 -129030495 + AT_rich Low_complexity Low_complexity 1 25 0 220 184 0 0 chr4 73299200 73299238 -129029109 + (TG)n Simple_repeat Simple_repeat 1 38 0 299 274 47 0 chr4 73302116 73302222 -129026125 - MIR SINE MIR -6 256 146 24 32 0 0 chr4 73303418 73303449 -129024898 + AT_rich Low_complexity Low_complexity 1 31 0 181 361 59 25 chr4 73303934 73304053 -129024294 + L3 LINE CR1 215 337 -1240 1655 98 0 21 chr4 73305523 73305757 -129022590 - AluY SINE Alu -82 229 1 1218 237 6 32 chr4 73305942 73306284 -129022063 - L1MB8 LINE L1 -12 6166 5834 3955 182 11 15 chr4 73306287 73306331 -129022016 + Tigger1 DNA MER2_type 1639 1682 -736 3191 173 8 40 chr4 73306331 73306954 -129021393 + LTR26 LTR ERV1 1 603 0 3955 182 11 15 chr4 73306954 73307691 -129020656 + Tigger1 DNA MER2_type 1682 2417 -1 1052 161 6 0 chr4 73307746 73307914 -129020433 + L1PA12 LINE L1 1 169 -7412 * 7280 175 16 9 chr4 73307911 73309316 -129019031 - L1P LINE L1 -2602 3544 2131 3521 108 19 2 chr4 73309316 73309837 -129018510 + L1PA10 LINE L1 5628 6157 -11 21 0 0 0 chr4 73309860 73309881 -129018466 + AT_rich Low_complexity Low_complexity 1 21 0 1176 61 6 11 chr4 73309892 73309919 -129018428 + (GAAA)n Simple_repeat Simple_repeat 1 206 0 1176 61 6 11 chr4 73309919 73310100 -129018247 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5710 217 18 52 chr4 73310112 73311666 -129016681 + L1PA12 LINE L1 155 1315 -6266 801 92 0 0 chr4 73311666 73311775 -129016572 - L1PA10 LINE L1 -11 6157 6049 5710 217 18 52 chr4 73311775 73312443 -129015904 + L1PA12 LINE L1 1315 2004 -5577 * 13739 224 52 24 chr4 73312441 73317083 -129011264 + L1PA13 LINE L1 339 5219 -1578 5355 118 26 16 chr4 73317083 73318290 -129010057 + L1PA13 LINE L1 5583 6800 -14 1562 169 32 0 chr4 73318298 73318582 -129009765 - L1MB1 LINE L1 -50 6118 5826 1358 128 5 9 chr4 73318598 73318809 -129009538 - AluSg/x SINE Alu -6 306 97 7685 219 46 46 chr4 73318809 73320411 -129007936 - L1MB1 LINE L1 -553 5615 3997 2118 119 13 13 chr4 73320411 73320723 -129007624 - AluSx SINE Alu 0 312 1 7685 219 46 46 chr4 73320723 73321996 -129006351 - L1MB1 LINE L1 -2171 3997 2726 * 7865 161 20 38 chr4 73321994 73322147 -129006200 - L1P4 LINE L1 -525 5649 5495 208 70 47 0 chr4 73322147 73322190 -129006157 + T-rich Low_complexity Low_complexity 3 47 0 7865 161 20 38 chr4 73322190 73323422 -129004925 - L1P4 LINE L1 -679 5495 4242 182 61 0 30 chr4 73323422 73323455 -129004892 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 7865 161 20 38 chr4 73323455 73323527 -129004820 - L1P4 LINE L1 -1932 4242 4170 2244 46 7 7 chr4 73323527 73323812 -129004535 - L1PA5 LINE L1 -6 6148 5864 7865 161 20 38 chr4 73323812 73324225 -129004122 - L1P4 LINE L1 -2004 4170 3818 4625 197 36 3 chr4 73324226 73325232 -129003115 + L1P LINE L1 2239 3277 -2869 5147 135 28 40 chr4 73325298 73326048 -129002299 - L1PA11 LINE L1 -33 6141 5405 1736 143 0 4 chr4 73326048 73326306 -129002041 - AluSx SINE Alu -19 293 37 5147 135 28 40 chr4 73326306 73326505 -129001842 - L1PA11 LINE L1 -769 5405 5205 1913 153 0 54 chr4 73328940 73329313 -128999034 + MER4A LTR ERV1 1 353 -311 3848 225 57 25 chr4 73329728 73331214 -128997133 + MER52A LTR ERV1 1 1755 0 11522 198 19 10 chr4 73331805 73334200 -128994147 - Tigger1 DNA MER2_type 0 2418 2 25 65 0 0 chr4 73334946 73334992 -128993355 + AT_rich Low_complexity Low_complexity 1 46 0 2366 72 0 25 chr4 73335255 73335574 -128992773 + AluY SINE Alu 1 311 0 23 0 0 0 chr4 73337004 73337027 -128991320 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 73337358 73337383 -128990964 + AT_rich Low_complexity Low_complexity 1 25 0 1822 228 52 54 chr4 73337887 73338440 -128989907 + MLT2B3 LTR ERVL 3 554 0 22884 156 10 3 chr4 73338445 73342088 -128986259 + HERVL-B3 LTR ERVL 6 3673 -1981 1953 178 51 33 chr4 73342088 73342633 -128985714 + MLT2A2 LTR ERVL 1 554 0 11112 152 31 48 chr4 73342633 73344655 -128983692 + HERVL-B3 LTR ERVL 3669 5654 0 1577 218 87 88 chr4 73344655 73345168 -128983179 + MLT2B3 LTR ERVL 1 514 -40 7474 84 40 8 chr4 73345168 73346206 -128982141 + MER11C LTR ERVK 1 1071 0 1577 218 87 88 chr4 73346206 73346247 -128982100 + MLT2B3 LTR ERVL 514 554 0 195 333 96 40 chr4 73347731 73347929 -128980418 + MIR SINE MIR 20 228 -34 294 391 31 19 chr4 73350179 73350501 -128977846 + MERVL LTR ERVL 1377 1702 -4062 511 119 9 9 chr4 73350592 73350701 -128977646 + (TAGA)n Simple_repeat Simple_repeat 1 109 0 291 283 25 57 chr4 73350809 73350968 -128977379 + MERVL LTR ERVL 3223 3376 -2109 2334 87 3 0 chr4 73351248 73351558 -128976789 + AluY SINE Alu 1 311 0 186 176 0 0 chr4 73352095 73352146 -128976201 + T-rich Low_complexity Low_complexity 1 51 0 1341 36 0 6 chr4 73352149 73352316 -128976031 - L1PA4 LINE L1 -1 6154 5989 11474 28 4 0 chr4 73352316 73354281 -128974066 + L1PA4 LINE L1 4017 5986 -169 523 329 65 45 chr4 73354299 73354746 -128973601 + MERVL LTR ERVL 4159 4614 -1150 290 352 31 0 chr4 73355053 73355181 -128973166 + MERVL LTR ERVL 4950 5081 -683 369 0 0 0 chr4 73355598 73355639 -128972708 + (TC)n Simple_repeat Simple_repeat 2 42 0 240 122 0 0 chr4 73355644 73355685 -128972662 + (TG)n Simple_repeat Simple_repeat 2 42 0 320 328 72 17 chr4 73355724 73355904 -128972443 + LTR33A LTR ERVL 62 251 -272 241 313 25 0 chr4 73356191 73356271 -128972076 + LTR59 LTR ERV1 111 192 -405 573 299 10 62 chr4 73356341 73356537 -128971810 + LTR51 LTR ERV1 239 408 -263 1465 202 183 16 chr4 73356737 73357168 -128971179 - MLT1D LTR MaLR -2 503 1 3922 188 53 3 chr4 73357510 73358224 -128970123 - MER21B LTR ERV1 -113 750 1 21 57 0 0 chr4 73359536 73359571 -128968776 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 73359728 73359749 -128968598 + AT_rich Low_complexity Low_complexity 1 21 0 235 300 0 0 chr4 73360667 73360757 -128967590 + L1MC4 LINE L1 6614 6703 -1339 14281 29 3 0 chr4 73361531 73363266 -128965081 + L1P LINE L1 3048 4788 -1358 488 268 107 58 chr4 73363374 73363598 -128964749 + MER49 LTR ERV1 654 888 -35 904 219 57 125 chr4 73364192 73364593 -128963754 + MLT1A2 LTR MaLR 1 374 0 382 307 131 52 chr4 73364842 73365530 -128962817 + HAL1b LINE L1 85 826 -522 34 0 0 0 chr4 73365729 73365763 -128962584 + AT_rich Low_complexity Low_complexity 1 34 0 830 155 125 209 chr4 73365784 73366281 -128962066 + LTR28 LTR ERV1 566 1020 0 359 395 16 0 chr4 73366584 73366827 -128961520 + L1PA12 LINE L1 7 253 -7328 13249 251 35 18 chr4 73368062 73372107 -128956240 + L1P LINE L1 979 5094 -1052 21 57 0 0 chr4 73372547 73372582 -128955765 + AT_rich Low_complexity Low_complexity 1 35 0 28 79 0 0 chr4 73372986 73373049 -128955298 + AT_rich Low_complexity Low_complexity 1 63 0 7097 54 0 9 chr4 73373082 73374054 -128954293 - L1PA5 LINE L1 -2 6152 5183 2715 55 0 0 chr4 73374054 73374400 -128953947 + L1PA5 LINE L1 4847 5192 -954 2422 123 20 0 chr4 73374525 73374882 -128953465 - THE1B LTR MaLR 0 364 1 1766 177 3 0 chr4 73375530 73375829 -128952518 - AluSq SINE Alu -1 312 13 1145 272 16 0 chr4 73375990 73376240 -128952107 + L1M1 LINE L1 1292 1545 -6020 9499 191 55 26 chr4 73376244 73376929 -128951418 + L1M1 LINE L1 1642 2306 -5259 1266 248 4 4 chr4 73376929 73377207 -128951140 + AluJo SINE Alu 5 282 -30 9499 191 55 26 chr4 73377207 73379657 -128948690 + L1M1 LINE L1 2306 4875 -2690 6331 102 25 1 chr4 73379655 73380587 -128947760 - L1P LINE L1 -1063 5083 4130 * 6214 230 35 14 chr4 73380575 73382234 -128946113 + L1M1 LINE L1 4871 6564 -1001 * 1825 156 24 43 chr4 73383390 73383761 -128944586 + THE1B LTR MaLR 1 364 0 24 32 0 0 chr4 73383864 73383895 -128944452 + AT_rich Low_complexity Low_complexity 1 31 0 186 43 0 0 chr4 73384214 73384237 -128944110 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1150 242 63 18 chr4 73384447 73384732 -128943615 - AluJo SINE Alu -2 300 3 4215 109 62 19 chr4 73384833 73385532 -128942815 + L1PB1 LINE L1 5423 6151 0 216 0 0 0 chr4 73385654 73385678 -128942669 + (TTG)n Simple_repeat Simple_repeat 2 25 0 261 300 60 0 chr4 73386458 73386558 -128941789 + Charlie2 DNA MER1_type 209 314 -2548 414 284 88 0 chr4 73386563 73386711 -128941636 + LTR41 LTR ERVL 3 163 -610 609 300 162 3 chr4 73386837 73387134 -128941213 + MER97b DNA MER1_type? 256 599 -454 272 270 107 10 chr4 73387555 73387751 -128940596 + MER97c DNA MER1_type? 820 1034 -56 268 295 58 22 chr4 73388793 73388932 -128939415 + MER67A LTR ERV1 395 538 -5 23 0 0 0 chr4 73389144 73389167 -128939180 + AT_rich Low_complexity Low_complexity 1 23 0 235 300 0 0 chr4 73389822 73389912 -128938435 - L1MC4 LINE L1 -1339 6703 6614 21 0 0 0 chr4 73390535 73390556 -128937791 + AT_rich Low_complexity Low_complexity 1 21 0 296 255 43 28 chr4 73390691 73390832 -128937515 + L1MA9 LINE L1 6132 6274 -38 6272 159 99 69 chr4 73392147 73393725 -128934622 - pTR5 LTR ERV1 0 2438 814 1402 123 0 9 chr4 73393956 73394184 -128934163 + L1PA13 LINE L1 5937 6162 -1 369 0 0 0 chr4 73394330 73394371 -128933976 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 490 69 56 0 chr4 73394373 73394445 -128933902 - MADE1 DNA Mariner -3 77 2 739 139 23 17 chr4 73395401 73395573 -128932774 + CT-rich Low_complexity Low_complexity 3 175 0 208 103 0 0 chr4 73395573 73395602 -128932745 + (TCC)n Simple_repeat Simple_repeat 2 30 0 1264 225 36 14 chr4 73395607 73395883 -128932464 - AluJo SINE Alu -27 285 4 252 266 44 35 chr4 73396501 73396614 -128931733 - MIR SINE MIR -2 260 147 217 357 28 28 chr4 73396659 73396802 -128931545 + L2 LINE L2 2595 2737 -577 25 0 0 0 chr4 73398727 73398752 -128929595 + AT_rich Low_complexity Low_complexity 1 25 0 1174 154 46 0 chr4 73399010 73399205 -128929142 - AluJb SINE Alu -23 289 86 22 35 0 0 chr4 73400850 73400879 -128927468 + AT_rich Low_complexity Low_complexity 1 29 0 246 161 0 89 chr4 73400962 73401018 -128927329 + Alu SINE Alu 247 297 -5 642 163 12 72 chr4 73401018 73401184 -128927163 + AluJo SINE Alu 15 170 -142 439 293 25 32 chr4 73401288 73401445 -128926902 + FRAM SINE Alu 1 155 -11 1492 182 56 3 chr4 73401526 73401812 -128926535 - AluSx SINE Alu -9 303 3 402 21 0 0 chr4 73401875 73401922 -128926425 + (CA)n Simple_repeat Simple_repeat 2 48 0 801 228 81 37 chr4 73402682 73403009 -128925338 - MSTD LTR MaLR -17 348 1 1088 202 0 59 chr4 73403381 73403619 -128924728 + AluJb SINE Alu 1 224 -88 2574 223 50 42 chr4 73403659 73405001 -128923346 - L1MB8 LINE L1 -51 6127 4778 894 53 75 30 chr4 73405002 73405135 -128923212 + L1PA10 LINE L1 6029 6167 -1 23 0 0 0 chr4 73405273 73405296 -128923051 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 73405602 73405632 -128922715 + AT_rich Low_complexity Low_complexity 1 30 0 243 79 0 0 chr4 73407686 73407724 -128920623 + (TG)n Simple_repeat Simple_repeat 2 39 0 2664 137 27 17 chr4 73408176 73408774 -128919573 - MER4E LTR ERV1 0 766 1 358 295 123 58 chr4 73409728 73410420 -128917927 + HAL1b LINE L1 86 822 -526 244 284 105 19 chr4 73410683 73410845 -128917502 + HAL1b LINE L1 1083 1258 -90 2317 95 0 0 chr4 73411015 73411321 -128917026 - AluY SINE Alu -5 306 1 1832 147 11 0 chr4 73413649 73413935 -128914412 - AluSx SINE Alu -21 291 3 24 0 0 0 chr4 73414212 73414236 -128914111 + AT_rich Low_complexity Low_complexity 1 24 0 271 321 55 18 chr4 73414527 73414636 -128913711 - MER91C DNA MER1_type -13 127 15 291 122 0 0 chr4 73414831 73414880 -128913467 + (CA)n Simple_repeat Simple_repeat 2 50 0 395 201 13 13 chr4 73416677 73416874 -128911473 + GA-rich Low_complexity Low_complexity 1 197 0 3204 296 50 38 chr4 73417059 73417688 -128910659 + L1PBa LINE L1 9 629 -6234 2096 184 26 30 chr4 73417688 73418118 -128910229 - MSTA LTR MaLR 0 428 1 3204 296 50 38 chr4 73418118 73419038 -128909309 + L1PBa LINE L1 629 1577 -5286 310 283 96 50 chr4 73419104 73419323 -128909024 + L1M4 LINE L1 3669 3897 -2249 225 319 16 43 chr4 73419335 73419523 -128908824 + L1M4 LINE L1 3935 4117 -2029 441 0 0 0 chr4 73419582 73419631 -128908716 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 253 249 33 123 chr4 73419873 73419974 -128908373 + L1M4 LINE L1 4497 4605 -1541 1601 84 0 9 chr4 73419974 73420224 -128908123 + AluSg/x SINE Alu 67 314 0 253 249 33 123 chr4 73420224 73420421 -128907926 + L1M4 LINE L1 4605 4770 -1376 35227 43 2 1 chr4 73420523 73425700 -128902647 + L1PA4 LINE L1 971 6155 0 22 0 0 0 chr4 73425802 73425824 -128902523 + AT_rich Low_complexity Low_complexity 1 22 0 1131 123 6 0 chr4 73425829 73425992 -128902355 - AluSq SINE Alu -24 289 126 431 317 67 32 chr4 73425992 73426276 -128902071 + L1M4 LINE L1 4980 5273 -873 912 196 6 0 chr4 73426278 73426446 -128901901 - AluJ SINE Alu -15 297 129 541 184 37 0 chr4 73426491 73426600 -128901747 - AluJ SINE Alu -181 131 19 300 206 29 0 chr4 73426603 73426671 -128901676 + L1MB7 LINE L1 6106 6175 -9 271 206 0 0 chr4 73426775 73426838 -128901509 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 26 30 0 0 chr4 73427284 73427317 -128901030 + AT_rich Low_complexity Low_complexity 1 33 0 869 227 116 38 chr4 73427672 73427966 -128900381 + MLT1B LTR MaLR 1 337 -53 838 146 7 21 chr4 73428257 73428401 -128899946 - AluJb SINE Alu -1 311 170 317 309 133 21 chr4 73429188 73429376 -128898971 + L1MEd LINE L1 614 822 -5297 2994 221 36 10 chr4 73429407 73430306 -128898041 + L1PA14 LINE L1 4520 5444 -722 6084 218 45 9 chr4 73430320 73430633 -128897714 + L1MA3 LINE L1 3345 3645 -2501 195 100 0 0 chr4 73430633 73430663 -128897684 + (CAA)n Simple_repeat Simple_repeat 3 32 0 6084 218 45 9 chr4 73430663 73431912 -128896435 + L1MA3 LINE L1 3645 4963 -1183 1792 160 144 13 chr4 73431915 73432289 -128896058 - MSTA LTR MaLR -5 423 1 4281 170 65 67 chr4 73432289 73433655 -128894692 + L1MA3 LINE L1 4958 6305 0 228 243 155 29 chr4 73434181 73434284 -128894063 + MIR SINE MIR 97 212 -50 25 31 0 0 chr4 73434810 73434842 -128893505 + AT_rich Low_complexity Low_complexity 1 32 0 474 49 0 0 chr4 73435314 73435375 -128892972 + (TG)n Simple_repeat Simple_repeat 2 62 0 1351 200 14 22 chr4 73436253 73436528 -128891819 + AluJo SINE Alu 12 284 -28 225 0 0 0 chr4 73436547 73436572 -128891775 + (TAAAA)n Simple_repeat Simple_repeat 5 29 0 322 256 78 23 chr4 73436572 73436696 -128891651 + L1M4 LINE L1 4304 4434 -1712 8075 173 16 16 chr4 73436775 73439017 -128889330 + L1PA14 LINE L1 3638 5877 -284 2942 149 10 14 chr4 73439117 73439634 -128888713 + L1PA14 LINE L1 5629 6143 -18 28 0 0 0 chr4 73439636 73439664 -128888683 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 73440057 73440087 -128888260 + AT_rich Low_complexity Low_complexity 1 30 0 590 275 12 12 chr4 73440794 73440961 -128887386 - LTR16C LTR ERVL -8 483 317 42 20 0 0 chr4 73441002 73441051 -128887296 + AT_rich Low_complexity Low_complexity 1 49 0 28 48 0 0 chr4 73441208 73441250 -128887097 + AT_rich Low_complexity Low_complexity 1 42 0 1268 263 121 45 chr4 73441497 73443133 -128885214 - L1MEc LINE L1 -3534 2681 961 21 57 0 0 chr4 73443267 73443302 -128885045 + AT_rich Low_complexity Low_complexity 1 35 0 492 250 107 45 chr4 73443460 73443796 -128884551 - L1MEc LINE L1 -5453 943 587 668 215 7 0 chr4 73443994 73444129 -128884218 + L1PA16 LINE L1 6030 6165 -1 1161 251 122 19 chr4 73444174 73444640 -128883707 - L1MC4 LINE L1 -886 7156 6643 348 64 0 0 chr4 73444926 73444973 -128883374 + (CAGG)n Simple_repeat Simple_repeat 2 48 0 685 109 29 15 chr4 73444973 73445110 -128883237 + GA-rich Low_complexity Low_complexity 2 140 0 928 238 68 4 chr4 73445381 73445633 -128882714 - L1 LINE L1 -880 5266 4999 1644 229 41 5 chr4 73445646 73446060 -128882287 + L1 LINE L1 4547 4975 -1171 313 344 112 27 chr4 73446096 73446355 -128881992 + L1ME3A LINE L1 3974 4254 -1892 1852 253 52 66 chr4 73446757 73447350 -128880997 + MER77 LTR ERV1 1 585 -20 27 62 0 0 chr4 73447559 73447607 -128880740 + AT_rich Low_complexity Low_complexity 1 48 0 32 67 0 0 chr4 73448781 73448841 -128879506 + AT_rich Low_complexity Low_complexity 1 60 0 2012 129 7 0 chr4 73450081 73450375 -128877972 + AluSg SINE Alu 1 296 -14 258 243 78 19 chr4 73450638 73450741 -128877606 + L1ME1 LINE L1 6058 6166 0 1775 268 52 26 chr4 73450752 73451402 -128876945 + L1ME3A LINE L1 5461 6127 -43 2462 39 0 0 chr4 73451437 73451757 -128876590 + AluY SINE Alu 1 320 0 1009 274 18 6 chr4 73452046 73452375 -128875972 + L1M4 LINE L1 3795 4127 -2019 823 80 24 24 chr4 73452467 73452688 -128875659 + L1MA1 LINE L1 6178 6398 0 2054 122 13 0 chr4 73453021 73453324 -128875023 + AluSx SINE Alu 1 307 -5 246 285 106 16 chr4 73454271 73454394 -128873953 - MIR SINE MIR -59 203 70 942 292 55 19 chr4 73454951 73455318 -128873029 + L2 LINE L2 2922 3301 -12 867 132 0 16 chr4 73455340 73455522 -128872825 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 228 347 80 19 chr4 73457662 73457875 -128870472 + MIR SINE MIR 29 254 -8 326 289 163 0 chr4 73459269 73459404 -128868943 + MIR SINE MIR 70 226 -36 294 241 0 36 chr4 73459931 73460014 -128868333 + GA-rich Low_complexity Low_complexity 3 82 0 223 277 24 24 chr4 73461060 73461143 -128867204 + MIR SINE MIR 180 262 0 246 323 90 18 chr4 73462747 73462914 -128865433 + L2 LINE L2 2250 2428 -886 220 222 40 10 chr4 73465716 73465815 -128862532 + (TA)n Simple_repeat Simple_repeat 2 103 0 27 29 0 0 chr4 73465862 73465896 -128862451 + AT_rich Low_complexity Low_complexity 1 34 0 310 316 34 45 chr4 73466049 73466226 -128862121 - MIR SINE MIR -8 254 80 643 150 7 95 chr4 73466229 73466376 -128861971 + L1PB4 LINE L1 6021 6154 -2 434 186 0 41 chr4 73467068 73467165 -128861182 + MER61E LTR ERV1 1 93 -476 245 217 38 104 chr4 73467176 73467233 -128861114 + LTR25 LTR ERV1 248 296 -498 198 0 0 0 chr4 73467233 73467255 -128861092 + (CATATA)n Simple_repeat Simple_repeat 6 27 0 245 217 38 104 chr4 73467255 73467303 -128861044 + LTR25 LTR ERV1 296 346 -448 * 2175 172 26 70 chr4 73467301 73467761 -128860586 + MER61E LTR ERV1 92 531 -38 22 109 0 0 chr4 73468085 73468177 -128860170 + AT_rich Low_complexity Low_complexity 1 92 0 340 146 12 49 chr4 73468668 73468750 -128859597 + L1MA2 LINE L1 6226 6304 0 1947 220 115 27 chr4 73468928 73469529 -128858818 + MER50 LTR ERV1 81 734 0 2077 104 45 0 chr4 73469621 73469909 -128858438 - AluSq SINE Alu -12 301 1 22 35 0 0 chr4 73469909 73469938 -128858409 + AT_rich Low_complexity Low_complexity 1 29 0 30 83 0 0 chr4 73469983 73470055 -128858292 + AT_rich Low_complexity Low_complexity 1 72 0 22 35 0 0 chr4 73470468 73470497 -128857850 + AT_rich Low_complexity Low_complexity 1 29 0 44 56 0 0 chr4 73470911 73470983 -128857364 + AT_rich Low_complexity Low_complexity 1 72 0 288 53 0 0 chr4 73471739 73471777 -128856570 + (CA)n Simple_repeat Simple_repeat 1 38 0 541 260 23 17 chr4 73472429 73472602 -128855745 - MLT1H LTR MaLR 0 549 376 1520 182 67 93 chr4 73472605 73473023 -128855324 + MLT2D LTR ERVL 1 407 -7 311 319 36 14 chr4 73473148 73473286 -128855061 - MLT1H LTR MaLR -304 245 105 852 300 21 8 chr4 73473449 73473692 -128854655 - MIR SINE MIR -11 251 6 9419 186 56 58 chr4 73473722 73474501 -128853846 + L1PBa LINE L1 6 785 -6077 4157 101 30 143 chr4 73474501 73475106 -128853241 - LTR12 LTR ERV1 0 826 361 270 0 0 0 chr4 73475106 73475136 -128853211 + (CA)n Simple_repeat Simple_repeat 2 31 0 4157 101 30 143 chr4 73475136 73475461 -128852886 - LTR12 LTR ERV1 -465 361 1 9419 186 56 58 chr4 73475461 73478057 -128850290 + L1PBa LINE L1 785 3372 -3490 441 0 0 0 chr4 73478057 73478106 -128850241 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 9419 186 56 58 chr4 73478106 73478225 -128850122 + L1PBa LINE L1 3372 3490 -3372 5295 147 40 0 chr4 73478224 73479066 -128849281 - L1P LINE L1 -5240 906 31 * 17278 66 0 4 chr4 73479053 73481346 -128847001 + L1P LINE L1 907 3191 -2955 28069 46 37 2 chr4 73481348 73484904 -128843443 + L1P LINE L1 2 3682 -2464 11480 198 39 46 chr4 73485860 73487119 -128841228 + L1MA1 LINE L1 17 1283 -6282 1671 188 10 10 chr4 73487119 73487428 -128840919 + AluJb SINE Alu 1 309 -3 11480 198 39 46 chr4 73487428 73488735 -128839612 + L1MA1 LINE L1 1283 2565 -5000 2484 50 0 3 chr4 73488967 73489268 -128839079 - AluY SINE Alu -11 300 1 400 143 0 39 chr4 73489748 73489825 -128838522 - AluJ/FRAM SINE Alu -1 301 228 22 35 0 0 chr4 73490037 73490066 -128838281 + AT_rich Low_complexity Low_complexity 1 29 0 306 273 148 0 chr4 73490356 73490484 -128837863 + L2 LINE L2 1960 2106 -1208 6934 174 21 53 chr4 73490587 73493403 -128834944 + L1MA1 LINE L1 2675 5401 -2164 6207 141 58 14 chr4 73494109 73494140 -128834207 + L1MA1 LINE L1 5406 5434 -2287 2089 150 114 8 chr4 73494140 73494527 -128833820 - MSTA LTR MaLR 0 428 1 6207 141 58 14 chr4 73494527 73496683 -128831664 + L1MA1 LINE L1 5434 7694 -27 3813 58 11 4 chr4 73496795 73497325 -128831022 - L1P LINE L1 -743 5403 4870 27 29 0 0 chr4 73498258 73498292 -128830055 + AT_rich Low_complexity Low_complexity 1 34 0 336 294 133 48 chr4 73498679 73499003 -128829344 + L1MEc LINE L1 405 787 -5609 246 116 0 0 chr4 73499003 73499046 -128829301 + (CATA)n Simple_repeat Simple_repeat 2 44 0 336 294 133 48 chr4 73499046 73499218 -128829129 + L1MEc LINE L1 787 943 -5453 1278 286 113 33 chr4 73499521 73501148 -128827199 + L1MEc LINE L1 972 2681 -3534 231 175 0 95 chr4 73501267 73501330 -128827017 + T-rich Low_complexity Low_complexity 4 60 0 37 39 0 0 chr4 73501586 73501637 -128826710 + AT_rich Low_complexity Low_complexity 1 51 0 464 323 12 12 chr4 73501691 73501858 -128826489 + LTR16C LTR ERVL 317 483 -8 314 339 42 6 chr4 73501894 73502059 -128826288 + HERV16 LTR ERVL 79 249 -4747 5391 158 31 18 chr4 73502214 73503618 -128824729 - L1PA15 LINE L1 -2 6163 4744 4862 32 0 3 chr4 73503658 73504244 -128824103 - L1PA5 LINE L1 -1 6153 5570 1992 34 0 0 chr4 73504244 73504483 -128823864 - L1PA5 LINE L1 -1959 4187 3949 312 258 0 0 chr4 73504639 73504705 -128823642 + HERV16 LTR ERVL 556 621 -4375 214 148 80 11 chr4 73504852 73504940 -128823407 + (TA)n Simple_repeat Simple_repeat 2 95 0 23 0 0 0 chr4 73505041 73505064 -128823283 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr4 73505083 73505110 -128823237 + AT_rich Low_complexity Low_complexity 1 27 0 1851 109 73 25 chr4 73505443 73505801 -128822546 - THE1C LTR MaLR 0 375 1 229 297 45 27 chr4 73506086 73506197 -128822150 - L1M4 LINE L1 -2000 4146 4034 242 95 24 0 chr4 73506846 73506888 -128821459 + (CA)n Simple_repeat Simple_repeat 2 44 0 5122 192 26 6 chr4 73508253 73509663 -128818684 - L1MA4 LINE L1 -9 6291 4861 * 9249 247 19 55 chr4 73509658 73511851 -128816496 - L1PA12 LINE L1 -941 6643 4371 218 56 28 0 chr4 73511851 73511887 -128816460 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1459 141 5 0 chr4 73511894 73512107 -128816240 - AluSq SINE Alu -24 289 76 15922 52 2 1 chr4 73512109 73514889 -128813458 - L1PA5 LINE L1 -3 6151 3368 484 167 0 0 chr4 73514890 73514968 -128813379 - AluSq SINE Alu -234 78 1 9249 247 19 55 chr4 73514968 73515200 -128813147 - L1PA12 LINE L1 -3220 4364 4125 1626 140 43 89 chr4 73515200 73515593 -128812754 + THE1C LTR MaLR 1 375 0 9249 247 19 55 chr4 73515593 73515684 -128812663 - L1PA12 LINE L1 -3459 4125 4032 2503 112 0 29 chr4 73515684 73516059 -128812288 - THE1B LTR MaLR 0 364 1 9249 247 19 55 chr4 73516059 73516674 -128811673 - L1PA12 LINE L1 -3552 4032 3539 2537 281 24 3 chr4 73516675 73517413 -128810934 - L1PA12 LINE L1 -4644 2937 2184 442 399 87 11 chr4 73517704 73518062 -128810285 - L1PA12 LINE L1 -6401 1173 789 1698 134 0 0 chr4 73518064 73518311 -128810036 - AluSx SINE Alu -7 305 59 3931 219 38 5 chr4 73518529 73519485 -128808862 + L1P4 LINE L1 4411 5397 -749 1057 214 0 23 chr4 73519498 73519718 -128808629 - AluJo SINE Alu -12 300 86 2382 134 10 13 chr4 73519718 73520105 -128808242 + L1P4 LINE L1 5397 5782 -384 527 330 102 0 chr4 73520231 73520428 -128807919 + L2 LINE L2 1012 1228 -2086 1053 157 0 0 chr4 73521627 73521793 -128806554 + AluSg/x SINE Alu 135 300 -10 569 343 25 29 chr4 73522316 73522590 -128805757 - MER115 DNA AcHobo -273 420 148 1639 259 141 2 chr4 73523295 73523763 -128804584 + MLT1G LTR MaLR 58 590 0 261 57 0 0 chr4 73523773 73523808 -128804539 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr4 73524093 73524122 -128804225 + AT_rich Low_complexity Low_complexity 1 29 0 2425 69 7 0 chr4 73524582 73524887 -128803460 - AluY SINE Alu -2 309 3 268 272 155 0 chr4 73525128 73525248 -128803099 - MIR3 SINE MIR -77 131 14 528 294 52 5 chr4 73526676 73526870 -128801477 - MIR SINE MIR -4 258 56 212 329 174 0 chr4 73526925 73527092 -128801255 - MIR SINE MIR 0 262 67 2516 114 0 8 chr4 73527110 73527477 -128800870 - THE1B LTR MaLR 0 364 1 10055 114 23 28 chr4 73527481 73529066 -128799281 - THE1B-int LTR MaLR -4 1576 1 2513 132 0 0 chr4 73529066 73529430 -128798917 - THE1B LTR MaLR 0 364 1 229 250 21 83 chr4 73529692 73529788 -128798559 - MER102a DNA MER1_type -10 320 231 231 324 27 0 chr4 73530178 73530252 -128798095 + MIR SINE MIR 8 83 -179 29 0 0 0 chr4 73530252 73530281 -128798066 + AT_rich Low_complexity Low_complexity 1 29 0 1544 175 28 108 chr4 73530404 73530792 -128797555 - LTR32 LTR ERVL 0 471 115 831 137 8 8 chr4 73530895 73531026 -128797321 + THE1C LTR MaLR 245 375 0 312 137 0 5 chr4 73531356 73531423 -128796924 - L1MA9 LINE L1 -8 6290 6225 309 306 65 0 chr4 73531617 73531741 -128796606 + MIR SINE MIR 20 151 -111 1501 182 7 4 chr4 73531830 73532099 -128796248 + AluJo SINE Alu 34 303 -9 1181 160 49 0 chr4 73532177 73532402 -128795945 + L1MA4 LINE L1 6053 6288 -12 2221 114 0 0 chr4 73532403 73532700 -128795647 - AluSx SINE Alu -13 299 3 1991 287 127 22 chr4 73532828 73534660 -128793687 + L1ME3A LINE L1 3184 5213 -933 227 324 0 0 chr4 73534882 73534956 -128793391 + (CATATA)n Simple_repeat Simple_repeat 2 75 0 1872 257 68 51 chr4 73534971 73535834 -128792513 + L1ME3A LINE L1 5292 6169 -1 261 306 37 28 chr4 73536514 73536622 -128791725 + MER5A DNA MER1_type 44 152 -37 21 36 0 0 chr4 73537364 73537392 -128790955 + AT_rich Low_complexity Low_complexity 1 28 0 753 167 15 0 chr4 73537805 73537937 -128790410 + AluJo SINE Alu 1 134 -178 23 0 0 0 chr4 73537937 73537960 -128790387 + AT_rich Low_complexity Low_complexity 1 23 0 613 271 127 13 chr4 73538393 73538622 -128789725 - MIR SINE MIR -6 256 2 17955 42 1 43 chr4 73540734 73543786 -128784561 + L1PA5 LINE L1 3132 6147 -7 453 36 0 0 chr4 73543786 73543841 -128784506 + (TA)n Simple_repeat Simple_repeat 1 55 0 306 87 0 0 chr4 73546394 73546440 -128781907 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 309 333 113 20 chr4 73546490 73546685 -128781662 - MIR SINE MIR -34 228 16 256 224 13 40 chr4 73546947 73546966 -128781381 + (CATATA)n Simple_repeat Simple_repeat 2 20 -55 712 234 163 19 chr4 73546966 73547175 -128781172 - MER8 DNA MER2_type 0 239 1 256 224 13 40 chr4 73547175 73547231 -128781116 + (CATATA)n Simple_repeat Simple_repeat 20 75 0 191 323 53 74 chr4 73548058 73548247 -128780100 - MIR SINE MIR -30 232 48 22 56 0 0 chr4 73548575 73548611 -128779736 + AT_rich Low_complexity Low_complexity 1 36 0 1989 162 6 40 chr4 73548866 73549217 -128779130 + MER1B DNA MER1_type 1 339 0 237 362 11 11 chr4 73550239 73550333 -128778014 - L2 LINE L2 -25 3247 3154 2343 59 28 0 chr4 73552587 73552876 -128775471 - AluY SINE Alu -14 297 1 531 265 11 63 chr4 73552958 73553147 -128775200 + L1MDa LINE L1 167 345 -6195 477 175 21 0 chr4 73553461 73553558 -128774789 + L1MDa LINE L1 1153 1251 -5292 3973 191 25 13 chr4 73553566 73554311 -128774036 + L1M1 LINE L1 50 803 -6762 3059 250 50 26 chr4 73554371 73555578 -128772769 + L1MDa LINE L1 1258 2493 -4047 2209 184 14 7 chr4 73555613 73556031 -128772316 - L1PA15 LINE L1 0 6816 6396 1971 143 32 24 chr4 73556031 73556403 -128771944 - THE1C LTR MaLR 0 375 1 9296 122 53 43 chr4 73556408 73557966 -128770381 - THE1C-int LTR MaLR -6 1574 1 1722 177 35 27 chr4 73557966 73558338 -128770009 - THE1C LTR MaLR 0 375 1 816 145 48 14 chr4 73558338 73558483 -128769864 - L1PA15 LINE L1 -417 6400 6251 * 5624 269 126 6 chr4 73558480 73560197 -128768150 - L1PA15 LINE L1 -780 6017 4094 3987 190 51 43 chr4 73560217 73561730 -128766617 - MER52A LTR ERV1 0 1755 59 243 204 0 19 chr4 73562084 73562138 -128766209 - MER52C LTR ERV1 -1218 60 8 5662 249 24 49 chr4 73562146 73564852 -128763495 - L1PA15 LINE L1 -2781 4016 1343 2418 293 5 8 chr4 73565126 73565740 -128762607 - L1PA15 LINE L1 -6175 612 1 2955 279 51 13 chr4 73565750 73567136 -128761211 + L1M4 LINE L1 2137 3575 -2571 22 0 0 0 chr4 73567349 73567371 -128760976 + AT_rich Low_complexity Low_complexity 1 22 0 447 305 19 26 chr4 73567685 73567839 -128760508 + MIR SINE MIR 2 154 -108 275 345 35 0 chr4 73568502 73568589 -128759758 + L2 LINE L2 3190 3279 -34 277 235 59 47 chr4 73568637 73568807 -128759540 + MER53 DNA DNA 15 186 -3 246 341 62 23 chr4 73569126 73569302 -128759045 + L2 LINE L2 2330 2512 -802 2099 171 59 0 chr4 73569670 73570044 -128758303 + MER57A LTR ERV1 1 396 -7 1172 240 106 44 chr4 73571606 73572284 -128756063 - L1MEc LINE L1 -1001 1575 800 864 260 68 49 chr4 73572319 73572732 -128755615 + MLT2B1 LTR ERVL 1 322 -92 778 213 75 34 chr4 73572767 73572935 -128755412 - MLT2D LTR ERVL -165 249 67 330 45 0 0 chr4 73572935 73572979 -128755368 + (CA)n Simple_repeat Simple_repeat 1 44 0 778 213 75 34 chr4 73572979 73573049 -128755298 - MLT2D LTR ERVL -347 67 1 236 283 81 71 chr4 73574853 73574952 -128753395 + MER5A DNA MER1_type 10 109 -80 209 322 128 39 chr4 73575090 73575270 -128753077 - MIR SINE MIR -42 220 25 204 111 0 0 chr4 73576643 73576679 -128751668 + (CA)n Simple_repeat Simple_repeat 1 36 0 324 0 0 0 chr4 73577326 73577362 -128750985 + (TCTCCC)n Simple_repeat Simple_repeat 2 37 0 7385 55 9 17 chr4 73577362 73578983 -128749364 + SVA Other Other 51 1384 -2 325 316 99 13 chr4 73579759 73579911 -128748436 + MIR SINE MIR 12 176 -86 2945 185 56 9 chr4 73579923 73580562 -128747785 - L1MB2 LINE L1 0 6171 5503 180 313 12 0 chr4 73580565 73580648 -128747699 + MIR SINE MIR 178 261 -1 337 167 11 67 chr4 73580817 73580907 -128747440 - L1MA2 LINE L1 -1 6303 6219 26 30 0 0 chr4 73580964 73580997 -128747350 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr4 73581725 73581758 -128746589 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chr4 73582176 73582214 -128746133 + AT_rich Low_complexity Low_complexity 1 38 0 397 240 64 8 chr4 73582377 73582502 -128745845 + MER94 DNA DNA 1 132 -2 667 250 16 27 chr4 73582908 73583096 -128745251 - MER5A DNA MER1_type -1 188 3 211 350 30 10 chr4 73583277 73583377 -128744970 - MIR SINE MIR -108 154 53 229 304 0 0 chr4 73584351 73584407 -128743940 - MER91B DNA MER1_type -121 69 14 4056 99 2 0 chr4 73584415 73584968 -128743379 + MER41A LTR ERV1 1 554 0 659 78 21 4 chr4 73585043 73585186 -128743161 + MER41B LTR ERV1 1 201 -434 4640 155 37 31 chr4 73585186 73586115 -128742232 + MER41A-int LTR ERV1 63 1080 -4866 195 42 0 0 chr4 73586116 73586140 -128742207 + (TG)n Simple_repeat Simple_repeat 1 24 0 2646 140 31 21 chr4 73586163 73586685 -128741662 + MER41A-int LTR ERV1 3546 4072 -3744 * 11454 124 33 14 chr4 73586668 73588297 -128740050 + MER41A-int LTR ERV1 2566 4162 -1784 2110 121 20 3 chr4 73588297 73588594 -128739753 - AluSq SINE Alu -11 302 1 11454 124 33 14 chr4 73588594 73589499 -128738848 + MER41A-int LTR ERV1 4162 5944 -2 3192 130 24 24 chr4 73589499 73589989 -128738358 + MER41A LTR ERV1 1 515 -120 1746 147 4 8 chr4 73589989 73590254 -128738093 - AluSx SINE Alu -48 264 1 3192 130 24 24 chr4 73590254 73590375 -128737972 + MER41A LTR ERV1 515 635 0 196 309 43 53 chr4 73590637 73590731 -128737616 + MIR SINE MIR 6 98 -164 201 231 51 39 chr4 73591913 73591991 -128736356 + MIR SINE MIR 139 217 -45 600 109 0 0 chr4 73593228 73593320 -128735027 - L1PA11 LINE L1 0 6174 6083 353 253 95 88 chr4 73593324 73593609 -128734738 + L1MC1 LINE L1 2179 2465 -3961 3884 183 68 2 chr4 73593878 73594907 -128733440 + L1MC1 LINE L1 5249 6344 -269 422 283 154 13 chr4 73594925 73595243 -128733104 + L1M4 LINE L1 4143 4505 -1641 180 158 0 0 chr4 73595907 73595945 -128732402 + CT-rich Low_complexity Low_complexity 2 39 0 254 29 29 0 chr4 73595945 73595980 -128732367 + (CA)n Simple_repeat Simple_repeat 1 36 0 25 0 0 0 chr4 73596024 73596049 -128732298 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr4 73596141 73596171 -128732176 + AT_rich Low_complexity Low_complexity 1 30 0 3103 168 23 5 chr4 73597608 73598178 -128730169 + LTR22 LTR ERVK 1 580 0 3460 222 179 27 chr4 73599116 73600119 -128728228 + MER52A LTR ERV1 117 1272 -483 384 80 0 0 chr4 73602823 73602873 -128725474 + MSTD LTR MaLR 1 50 -346 1286 233 7 24 chr4 73603160 73603452 -128724895 - AluJo SINE Alu -25 287 1 1546 194 101 11 chr4 73603471 73603837 -128724510 - L1MD1 LINE L1 -19 6223 5825 459 212 0 0 chr4 73604721 73604806 -128723541 - Tigger5 DNA MER2_type 0 2323 2239 437 237 0 11 chr4 73604818 73604911 -128723436 + Tigger5 DNA MER2_type 1 92 -2231 281 231 0 15 chr4 73604932 73604997 -128723350 - Tigger5 DNA MER2_type -9 2314 2251 * 347 125 0 18 chr4 73604965 73605021 -128723326 - Tigger5 DNA MER2_type -2268 55 1 249 139 0 0 chr4 73605024 73605067 -128723280 + (CA)n Simple_repeat Simple_repeat 2 44 0 258 242 20 10 chr4 73605077 73605176 -128723171 + (TA)n Simple_repeat Simple_repeat 1 100 0 304 308 41 77 chr4 73605191 73605386 -128722961 + Charlie7 DNA MER1_type 107 294 -2318 914 253 167 38 chr4 73605624 73606379 -128721968 + Charlie7 DNA MER1_type 1760 2611 -1 571 121 0 0 chr4 73606629 73606712 -128721635 + FAM SINE Alu 96 178 -7 322 316 58 12 chr4 73606753 73606924 -128721423 + MIR SINE MIR 82 260 -2 413 128 0 26 chr4 73606998 73607076 -128721271 - L1MC1 LINE L1 0 6333 6258 2018 132 10 0 chr4 73608261 73608556 -128719791 + AluSx SINE Alu 1 298 -14 312 313 0 21 chr4 73608579 73608675 -128719672 + L1MC4 LINE L1 6614 6707 -1335 324 258 21 11 chr4 73608703 73608796 -128719551 + MER103 DNA DNA 1 94 -72 865 211 46 31 chr4 73609019 73609213 -128719134 - MER20 DNA MER1_type -19 200 4 24 32 0 0 chr4 73610746 73610777 -128717570 + AT_rich Low_complexity Low_complexity 1 31 0 1248 40 0 0 chr4 73610792 73610941 -128717406 - L1PA5 LINE L1 -7 6147 5999 2550 29 61 0 chr4 73610941 73611252 -128717095 - L1PA5 LINE L1 -375 5779 5450 2414 69 0 10 chr4 73611953 73612258 -128716089 - AluY SINE Alu -9 302 1 2110 185 60 5 chr4 73612303 73612703 -128715644 + MSTB LTR MaLR 5 426 0 226 398 34 0 chr4 73613097 73613273 -128715074 - L2 LINE L2 -445 2869 2688 1701 191 48 26 chr4 73613805 73614183 -128714164 + MLT1B LTR MaLR 5 390 0 2177 192 24 48 chr4 73614183 73614688 -128713659 + MLT1B-int LTR MaLR 1 493 -878 1932 277 51 44 chr4 73614740 73615865 -128712482 + L1M3e LINE L1 7 2180 -4857 228 67 0 0 chr4 73615875 73615905 -128712442 + (A)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr4 73616190 73616211 -128712136 + AT_rich Low_complexity Low_complexity 1 21 0 361 212 35 62 chr4 73616961 73617074 -128711273 - FLAM_C SINE Alu -22 111 2 23 68 0 0 chr4 73617111 73617155 -128711192 + AT_rich Low_complexity Low_complexity 1 44 0 1471 173 20 27 chr4 73617952 73618247 -128710100 + AluJo SINE Alu 4 296 -16 182 339 0 0 chr4 73618632 73618688 -128709659 + L2 LINE L2 2914 2969 -303 1512 215 0 20 chr4 73619360 73619653 -128708694 + AluJo SINE Alu 12 298 -14 1072 268 82 46 chr4 73619656 73619855 -128708492 + L1ME3A LINE L1 3286 3476 -2670 207 0 0 0 chr4 73619855 73619878 -128708469 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1072 268 82 46 chr4 73619878 73620309 -128708038 + L1ME3A LINE L1 3476 3939 -2207 305 134 0 7 chr4 73620341 73620580 -128707767 + AluSx SINE Alu 3 304 -4 1004 288 74 17 chr4 73620580 73621052 -128707295 + L1ME3A LINE L1 3844 4342 -1804 732 245 70 108 chr4 73621066 73621438 -128706909 + MER57A LTR ERV1 43 400 -3 1462 254 67 50 chr4 73621575 73622315 -128706032 + L1ME3A LINE L1 5008 5734 -436 2296 129 27 30 chr4 73622315 73622680 -128705667 + THE1B LTR MaLR 1 364 0 10696 119 8 8 chr4 73622680 73624261 -128704086 + THE1B-int LTR MaLR 1 1580 0 2224 126 27 53 chr4 73624261 73624635 -128703712 + THE1B LTR MaLR 1 364 0 1462 254 67 50 chr4 73624635 73624680 -128703667 + L1ME3A LINE L1 5733 5800 -370 550 269 8 0 chr4 73624697 73624827 -128703520 - MER5A DNA MER1_type -4 185 55 1022 252 55 16 chr4 73624899 73625208 -128703139 + L1ME3A LINE L1 5842 6162 -8 44 20 0 0 chr4 73625208 73625259 -128703088 + AT_rich Low_complexity Low_complexity 1 51 0 276 307 11 0 chr4 73626031 73626119 -128702228 + MIR3 SINE MIR 119 207 -1 1115 193 9 9 chr4 73626834 73627047 -128701300 - AluJo SINE Alu -13 299 87 22 0 0 0 chr4 73628195 73628217 -128700130 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr4 73628318 73628345 -128700002 + AT_rich Low_complexity Low_complexity 1 27 0 26 74 0 0 chr4 73628796 73628850 -128699497 + AT_rich Low_complexity Low_complexity 1 54 0 4681 101 11 1 chr4 73629958 73630612 -128697735 + PABL_A LTR ERV1 1 660 0 280 265 51 31 chr4 73630924 73631022 -128697325 + MIR3 SINE MIR 108 207 -1 277 241 188 62 chr4 73631675 73631787 -128696560 - L2 LINE L2 0 3313 3188 182 244 24 0 chr4 73631853 73631894 -128696453 - L2 LINE L2 -563 2751 2710 410 347 127 45 chr4 73632156 73632559 -128695788 + L2 LINE L2 2127 2562 -752 405 280 149 12 chr4 73632564 73632732 -128695615 + MIR SINE MIR 7 197 -65 621 100 0 0 chr4 73633068 73633158 -128695189 + (TA)n Simple_repeat Simple_repeat 2 91 0 4199 175 15 6 chr4 73633651 73634502 -128693845 - MER54A LTR ERVL 0 901 6 417 263 0 32 chr4 73634631 73634726 -128693621 - MIR SINE MIR -170 92 1 21 36 0 0 chr4 73635057 73635085 -128693262 + AT_rich Low_complexity Low_complexity 1 28 0 277 372 22 22 chr4 73635950 73636087 -128692260 + MIR3 SINE MIR 31 167 -41 5271 74 6 4 chr4 73636143 73636831 -128691516 - L1PA7 LINE L1 -8 6146 5458 393 275 75 0 chr4 73638012 73638132 -128690215 - MIR SINE MIR -69 193 65 1360 174 0 37 chr4 73638137 73638379 -128689968 + AluJo SINE Alu 11 243 -69 666 253 145 20 chr4 73638840 73639089 -128689258 - LTR4 LTR ERV1 0 596 317 7314 190 6 6 chr4 73639098 73640364 -128687983 - HERV3 LTR ERV1 -3459 4967 3702 4280 63 8 186 chr4 73640365 73641202 -128687145 + LTR12 LTR ERV1 1 688 0 19112 101 35 14 chr4 73641226 73643999 -128684348 + HERV9 LTR ERV1 58 2887 -5512 334 291 17 0 chr4 73644007 73644124 -128684223 + LTR30 LTR ERV1 524 642 -80 2620 83 0 0 chr4 73644125 73644463 -128683884 + LTR12 LTR ERV1 377 714 0 18350 204 26 29 chr4 73644463 73648177 -128680170 - HERV3 LTR ERV1 -4722 3704 1 540 265 149 24 chr4 73648177 73648426 -128679921 - LTR4 LTR ERV1 0 596 317 598 232 79 105 chr4 73648523 73648876 -128679471 - LTR4 LTR ERV1 -239 357 14 260 328 88 36 chr4 73648914 73649106 -128679241 + MIR SINE MIR 45 246 -16 400 336 128 61 chr4 73649502 73650419 -128677928 + L2 LINE L2 1735 2712 -602 356 385 97 43 chr4 73650895 73651194 -128677153 + L2 LINE L2 2907 3221 -51 25 31 0 0 chr4 73651581 73651613 -128676734 + AT_rich Low_complexity Low_complexity 1 32 0 592 186 42 0 chr4 73651628 73651746 -128676601 - FLAM_C SINE Alu -20 123 1 978 175 0 24 chr4 73652738 73652904 -128675443 + FRAM SINE Alu 1 161 -15 357 313 82 7 chr4 73653011 73653158 -128675189 + MIR SINE MIR 91 248 -14 21 57 0 0 chr4 73653158 73653193 -128675154 + AT_rich Low_complexity Low_complexity 1 35 0 728 185 0 0 chr4 73653514 73653633 -128674714 - FLAM_C SINE Alu -24 119 1 965 253 67 32 chr4 73653677 73654139 -128674208 - L1M4 LINE L1 -2577 3569 3092 756 216 159 38 chr4 73654592 73654912 -128673435 - L1MC3 LINE L1 -531 7254 6896 1283 241 111 6 chr4 73654973 73655325 -128673022 - MSTD LTR MaLR -7 389 1 21 71 0 0 chr4 73655984 73656026 -128672321 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr4 73656280 73656312 -128672035 + AT_rich Low_complexity Low_complexity 1 32 0 2409 58 0 19 chr4 73656572 73656883 -128671464 + AluY SINE Alu 1 305 -6 959 203 0 16 chr4 73657243 73657425 -128670922 + AluJo SINE Alu 1 179 -133 1474 170 0 17 chr4 73657426 73657667 -128670680 + AluJo SINE Alu 63 299 -13 239 322 245 29 chr4 73658214 73658593 -128669754 + L2 LINE L2 2186 2646 -668 2472 69 0 0 chr4 73658640 73658945 -128669402 - AluY SINE Alu -6 305 1 274 303 107 0 chr4 73660319 73660441 -128667906 + MIR SINE MIR 124 258 -4 1770 110 28 0 chr4 73660972 73661254 -128667093 + L1MA3 LINE L1 6016 6305 0 285 259 28 9 chr4 73661299 73661407 -128666940 + (TA)n Simple_repeat Simple_repeat 1 110 0 43 47 0 0 chr4 73661712 73661776 -128666571 + AT_rich Low_complexity Low_complexity 1 64 0 231 114 0 0 chr4 73662115 73662150 -128666197 + (A)n Simple_repeat Simple_repeat 1 35 0 798 306 50 19 chr4 73662245 73662667 -128665680 - L1ME3 LINE L1 -324 5838 5407 354 236 67 113 chr4 73662872 73663156 -128665191 - L1MEd LINE L1 -5060 1059 789 240 122 0 0 chr4 73663199 73663240 -128665107 + (TG)n Simple_repeat Simple_repeat 2 42 0 234 0 0 0 chr4 73663896 73663922 -128664425 + (TG)n Simple_repeat Simple_repeat 2 27 0 315 304 35 35 chr4 73666687 73666802 -128661545 + L2 LINE L2 308 422 -2892 365 0 0 0 chr4 73666863 73666907 -128661440 - L1PA5 LINE L1 -1022 5124 5081 7268 47 1 0 chr4 73666907 73667934 -128660413 + L1PA5 LINE L1 5122 6149 -5 363 321 192 9 chr4 73669327 73669551 -128658796 + L2 LINE L2 3002 3266 -6 639 336 42 5 chr4 73669659 73669876 -128658471 - MIR SINE MIR 0 262 38 1005 124 0 0 chr4 73670223 73670376 -128657971 + L1MA2 LINE L1 6152 6304 0 311 243 23 22 chr4 73670689 73670803 -128657544 - L1ME LINE L1 -350 5771 5657 26 0 0 0 chr4 73670954 73670980 -128657367 + AT_rich Low_complexity Low_complexity 1 26 0 186 352 57 9 chr4 73671555 73671660 -128656687 - L2 LINE L2 -3 3310 3201 275 339 9 70 chr4 73672032 73672259 -128656088 - L2 LINE L2 -480 2834 2622 213 333 52 33 chr4 73672290 73672443 -128655904 - L2 LINE L2 -795 2519 2364 2455 52 0 7 chr4 73672453 73672760 -128655587 + AluY SINE Alu 1 305 -6 226 219 0 0 chr4 73675019 73675060 -128653287 + polypyrimidine Low_complexity Low_complexity 4 44 0 202 283 8 133 chr4 73675093 73675213 -128653134 - L2 LINE L2 -5 3267 3163 202 282 84 0 chr4 73675238 73675309 -128653038 + L2 LINE L2 3229 3305 -8 21 57 0 0 chr4 73675655 73675690 -128652657 + AT_rich Low_complexity Low_complexity 1 35 0 23 78 0 0 chr4 73677339 73677390 -128650957 + AT_rich Low_complexity Low_complexity 1 51 0 897 138 0 19 chr4 73678149 73678308 -128650039 + AluSg/x SINE Alu 155 310 0 2549 286 16 58 chr4 73678308 73679049 -128649298 - L1MC2 LINE L1 -165 6179 5470 2125 276 53 34 chr4 73679048 73679901 -128648446 - L1MCb LINE L1 -5176 869 1 * 2089 71 4 8 chr4 73680129 73680395 -128647952 + AluSq SINE Alu 36 300 -13 749 168 0 0 chr4 73681266 73681385 -128646962 - FLAM_C SINE Alu -24 119 1 635 284 75 22 chr4 73681429 73681750 -128646597 - L1MC2 LINE L1 -2577 3569 3232 325 113 57 0 chr4 73681954 73682007 -128646340 + MLT2B2 LTR ERVL 1 56 -459 1465 174 0 0 chr4 73682011 73682247 -128646100 + MER46A DNA MER2_type 1 236 0 * 2655 161 17 35 chr4 73682247 73682706 -128645641 + MLT2B2 LTR ERVL 55 504 -11 931 233 0 0 chr4 73682706 73682882 -128645465 + MSTB LTR MaLR 1 176 -250 511 156 11 0 chr4 73682978 73683078 -128645269 + MSTB1 LTR MaLR 296 432 0 7168 187 61 84 chr4 73683097 73684902 -128643445 + ERVL-B2 LTR ERVL 4 1766 -3998 3102 187 99 3 chr4 73684898 73685486 -128642861 + ERVL LTR ERVL 3087 3730 -2034 * 6046 95 32 12 chr4 73685490 73686451 -128641896 + MER4A-int LTR ERV1 1498 2477 -4121 787 190 51 42 chr4 73686459 73686696 -128641651 + MER4A-int LTR ERV1 3448 3686 -2912 * 1647 132 27 14 chr4 73686690 73686985 -128641362 + MER4A-int LTR ERV1 3837 4135 -2463 1371 71 169 4 chr4 73686985 73687339 -128641008 + MLT2A2 LTR ERVL 1 453 0 13963 115 52 18 chr4 73687339 73689726 -128638621 + MER4A-int LTR ERV1 4131 6596 -2 551 152 10 20 chr4 73689732 73689831 -128638516 + MER4A LTR ERV1 1 98 -566 1551 144 11 33 chr4 73689831 73690184 -128638163 + MER4A LTR ERV1 261 664 0 505 277 47 106 chr4 73691182 73691715 -128636632 - MLT1G LTR MaLR -4 567 89 250 277 48 121 chr4 73691716 73691882 -128636465 + MER91B DNA MER1_type 13 166 -24 * 335 360 0 0 chr4 73691858 73691958 -128636389 + MER91B DNA MER1_type 91 190 0 237 322 20 67 chr4 73692287 73692436 -128635911 - L2 LINE L2 0 3313 3172 2296 185 58 63 chr4 73692795 73693434 -128634913 - MER92B LTR ERV1 0 636 1 446 318 91 18 chr4 73694140 73694360 -128633987 + MIR SINE MIR 3 238 -24 533 271 231 23 chr4 73694875 73694886 -128633461 - L1MC4a LINE L1 -1674 6134 6127 791 251 6 0 chr4 73694886 73695053 -128633294 + FAM SINE Alu 2 169 -6 533 271 231 23 chr4 73695053 73695277 -128633070 - L1MC4a LINE L1 -1681 6127 5951 1416 215 19 16 chr4 73695277 73695588 -128632759 - AluJb SINE Alu 0 312 1 533 271 231 23 chr4 73695588 73695831 -128632516 - L1MC4a LINE L1 -1857 5951 5555 461 269 33 14 chr4 73695855 73696067 -128632280 - L1MC4a LINE L1 -2338 5470 5255 4284 78 19 2 chr4 73696205 73696791 -128631556 - L1PA12 LINE L1 0 6168 5573 1360 87 5 0 chr4 73696791 73696976 -128631371 + L1PA12 LINE L1 5388 5573 -590 432 303 26 13 chr4 73697130 73697282 -128631065 - LTR33 LTR ERVL -36 485 332 25 31 0 0 chr4 73698142 73698174 -128630173 + AT_rich Low_complexity Low_complexity 1 32 0 301 324 65 19 chr4 73698525 73698633 -128629714 - L2 LINE L2 -4 3268 3156 225 378 19 39 chr4 73699346 73699502 -128628845 - L2 LINE L2 -186 3086 2934 1901 151 38 27 chr4 73699507 73699878 -128628469 - THE1C LTR MaLR 0 375 1 394 114 0 43 chr4 73699878 73699948 -128628399 - THE1C-int LTR MaLR 0 1580 1514 231 62 0 0 chr4 73700003 73700035 -128628312 + THE1-int LTR MaLR 1514 1545 -35 8820 147 25 30 chr4 73700066 73701581 -128626766 - THE1C-int LTR MaLR -72 1508 1 1877 159 35 27 chr4 73701581 73701953 -128626394 - THE1C LTR MaLR 0 375 1 297 0 0 0 chr4 73702702 73702735 -128625612 + (TC)n Simple_repeat Simple_repeat 2 34 0 225 307 67 33 chr4 73702830 73702980 -128625367 - LTR68 LTR ERV1 -578 162 8 223 243 201 35 chr4 73703112 73703256 -128625091 - L2 LINE L2 0 3313 3146 344 339 0 40 chr4 73703706 73703880 -128624467 + G-rich Low_complexity Low_complexity 4 170 0 353 297 0 27 chr4 73703936 73704047 -128624300 + G-rich Low_complexity Low_complexity 6 113 0 377 23 0 0 chr4 73704093 73704136 -128624211 + (TC)n Simple_repeat Simple_repeat 2 44 0 223 243 201 35 chr4 73704514 73704658 -128623689 - L2 LINE L2 0 3313 3146 32 43 0 0 chr4 73705176 73705222 -128623125 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr4 73705579 73705611 -128622736 + AT_rich Low_complexity Low_complexity 1 32 0 671 267 19 15 chr4 73705638 73705844 -128622503 - Charlie4 DNA MER1_type -1754 207 1 240 285 56 0 chr4 73705921 73706022 -128622325 - MLT1J LTR MaLR -325 125 38 603 184 27 0 chr4 73706104 73706233 -128622114 - MSTD LTR MaLR 0 396 226 1145 282 103 39 chr4 73706255 73706921 -128621426 + L2 LINE L2 2424 3133 -180 378 0 0 0 chr4 73707886 73707928 -128620419 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 4336 183 79 10 chr4 73708157 73709117 -128619230 + L1MC2 LINE L1 5308 6333 -11 1928 166 37 3 chr4 73709229 73709578 -128618769 - L1PB4 LINE L1 -3 6153 5793 243 0 0 0 chr4 73709578 73709605 -128618742 + (TG)n Simple_repeat Simple_repeat 1 27 0 195 220 0 0 chr4 73709626 73709676 -128618671 + (TA)n Simple_repeat Simple_repeat 1 50 0 335 22 0 22 chr4 73709884 73709929 -128618418 + (CA)n Simple_repeat Simple_repeat 2 45 0 895 113 0 0 chr4 73709939 73710072 -128618275 - L1PA13 LINE L1 -240 5923 5791 262 159 0 29 chr4 73710072 73710141 -128618206 - L1PB4 LINE L1 -840 5306 5240 23 0 0 0 chr4 73710375 73710398 -128617949 + AT_rich Low_complexity Low_complexity 1 23 0 813 192 23 34 chr4 73710416 73710593 -128617754 - AluJo SINE Alu -25 287 113 1896 156 140 13 chr4 73710596 73710975 -128617372 + MSTA LTR MaLR 1 427 -1 551 171 86 0 chr4 73710976 73711081 -128617266 - AluJo SINE Alu -188 114 1 736 221 32 0 chr4 73711218 73711376 -128616971 + FAM SINE Alu 5 167 -8 592 212 8 8 chr4 73711607 73711725 -128616622 - MLT1A1 LTR MaLR 0 365 248 183 324 69 10 chr4 73711734 73711785 -128616562 + MIR SINE MIR 98 145 -117 1750 177 0 10 chr4 73711785 73712079 -128616268 + AluJb SINE Alu 11 301 -11 183 324 69 10 chr4 73712079 73712129 -128616218 + MIR SINE MIR 145 205 -57 28 29 0 0 chr4 73712947 73712982 -128615365 + AT_rich Low_complexity Low_complexity 1 35 0 300 315 99 6 chr4 73713149 73713311 -128615036 - MIR SINE MIR -15 247 71 334 349 36 60 chr4 73713599 73713880 -128614467 + L2 LINE L2 1321 1594 -1720 804 182 42 12 chr4 73714259 73714424 -128613923 + L1MC3 LINE L1 7616 7785 0 25 31 0 0 chr4 73714835 73714867 -128613480 + AT_rich Low_complexity Low_complexity 1 32 0 358 356 55 51 chr4 73716025 73716453 -128611894 - L2 LINE L2 -96 3176 2744 380 218 18 55 chr4 73716500 73716610 -128611737 - LTR67 LTR ERVL -421 136 31 663 309 44 46 chr4 73717371 73717737 -128610610 + Charlie2 DNA MER1_type 1 365 -2417 729 258 151 27 chr4 73717740 73718078 -128610269 + Charlie2 DNA MER1_type 2233 2660 -202 1786 106 4 4 chr4 73718078 73718323 -128610024 - AluSq SINE Alu -9 304 60 729 258 151 27 chr4 73718323 73718508 -128609839 + Charlie2 DNA MER1_type 2660 2821 -41 26 82 0 0 chr4 73719168 73719229 -128609118 + AT_rich Low_complexity Low_complexity 1 61 0 221 344 83 19 chr4 73720088 73720245 -128608102 - L3 LINE CR1 -4 1573 1407 186 247 0 135 chr4 73720929 73721018 -128607329 - L2 LINE L2 -189 3083 3007 2090 114 3 20 chr4 73721411 73721717 -128606630 + AluSx SINE Alu 1 301 -11 9132 144 15 23 chr4 73721839 73724596 -128603751 + L1MA1 LINE L1 3555 6298 -4 23 33 0 0 chr4 73724598 73724628 -128603719 + AT_rich Low_complexity Low_complexity 1 30 0 635 259 151 0 chr4 73724757 73724942 -128603405 + MIR SINE MIR 5 217 -45 26 30 0 0 chr4 73724942 73724975 -128603372 + AT_rich Low_complexity Low_complexity 1 33 0 212 170 19 0 chr4 73725146 73725199 -128603148 + (TA)n Simple_repeat Simple_repeat 1 54 0 435 229 59 130 chr4 73725617 73725870 -128602477 - MER102b DNA MER1_type -9 332 98 1985 122 6 29 chr4 73727355 73727666 -128600681 + AluSq SINE Alu 1 304 -9 184 151 19 19 chr4 73728069 73728122 -128600225 + A-rich Low_complexity Low_complexity 4 56 0 194 289 70 35 chr4 73729292 73729406 -128598941 - L2 LINE L2 -331 2941 2824 196 51 26 26 chr4 73729885 73729924 -128598423 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 24 53 0 0 chr4 73730217 73730255 -128598092 + AT_rich Low_complexity Low_complexity 1 38 0 221 245 10 0 chr4 73730439 73730541 -128597806 + (TA)n Simple_repeat Simple_repeat 1 103 0 21 0 0 0 chr4 73730644 73730665 -128597682 + AT_rich Low_complexity Low_complexity 1 21 0 2168 118 16 0 chr4 73731728 73732033 -128596314 + AluSx SINE Alu 1 310 -2 226 212 33 133 chr4 73732046 73732197 -128596150 - MER103 DNA DNA -20 146 11 1925 204 29 78 chr4 73733433 73734011 -128594336 + MLT2B3 LTR ERVL 5 554 0 245 154 77 31 chr4 73734218 73734283 -128594064 + LTR67 LTR ERVL 478 545 -12 1557 242 28 14 chr4 73734459 73734819 -128593528 + MLT1A1 LTR MaLR 1 365 0 694 118 0 0 chr4 73735517 73735610 -128592737 + HERVL LTR ERVL 5269 5361 -293 26 30 0 0 chr4 73735656 73735689 -128592658 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr4 73735799 73735823 -128592524 + AT_rich Low_complexity Low_complexity 1 24 0 238 200 0 0 chr4 73735992 73736037 -128592310 + MIR SINE MIR 218 262 0 22 0 0 0 chr4 73736786 73736808 -128591539 + AT_rich Low_complexity Low_complexity 1 22 0 1497 161 0 85 chr4 73737026 73737342 -128591005 - AluJo SINE Alu -23 289 1 246 62 0 0 chr4 73737901 73737933 -128590414 + (A)n Simple_repeat Simple_repeat 1 32 0 3094 183 56 12 chr4 73738188 73738865 -128589482 - L1MB3 LINE L1 -1 6182 5476 4069 148 4 11 chr4 73738876 73739584 -128588763 - L1MA5A LINE L1 -12 6285 5583 21 0 0 0 chr4 73740486 73740507 -128587840 + AT_rich Low_complexity Low_complexity 1 21 0 2226 106 0 3 chr4 73740797 73741099 -128587248 - AluSg SINE Alu -9 301 1 370 325 175 0 chr4 73741261 73741415 -128586932 + MER5A DNA MER1_type 9 189 0 323 298 230 11 chr4 73741724 73741915 -128586432 - MIR SINE MIR -25 237 5 4098 121 107 116 chr4 73742044 73743465 -128584882 + pTR5 LTR ERV1 741 2438 0 1595 178 14 3 chr4 73743947 73744234 -128584113 - AluSx SINE Alu -22 290 1 346 278 37 0 chr4 73744377 73744485 -128583862 - MER94 DNA DNA -12 122 11 234 0 0 0 chr4 73744880 73744906 -128583441 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 668 195 0 0 chr4 73744911 73745029 -128583318 - FLAM_C SINE Alu -25 118 1 216 97 0 0 chr4 73745405 73745436 -128582911 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 14889 47 5 5 chr4 73745491 73748143 -128580204 - L1PA5 LINE L1 0 6154 3501 24 32 0 0 chr4 73748714 73748745 -128579602 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 73753006 73753028 -128575319 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr4 73753563 73753601 -128574746 + AT_rich Low_complexity Low_complexity 1 38 0 1355 200 49 39 chr4 73753603 73753888 -128574459 + AluJb SINE Alu 3 290 -22 24 0 0 0 chr4 73754532 73754556 -128573791 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr4 73755553 73755579 -128572768 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr4 73756279 73756315 -128572032 + AT_rich Low_complexity Low_complexity 1 36 0 26 74 0 0 chr4 73756421 73756475 -128571872 + AT_rich Low_complexity Low_complexity 1 54 0 344 100 0 0 chr4 73756639 73756689 -128571658 - MADE1 DNA Mariner -1 79 30 520 80 67 0 chr4 73756694 73756769 -128571578 - MADE1 DNA Mariner 0 80 1 21 36 0 0 chr4 73756977 73757005 -128571342 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 73758404 73758429 -128569918 + AT_rich Low_complexity Low_complexity 1 25 0 351 0 0 0 chr4 73758456 73758495 -128569852 + (CA)n Simple_repeat Simple_repeat 1 39 0 345 297 201 27 chr4 73758768 73758987 -128569360 + MIR SINE MIR 6 262 0 229 174 22 0 chr4 73759288 73759334 -128569013 + MIR3 SINE MIR 124 170 -38 23 54 0 0 chr4 73759486 73759523 -128568824 + AT_rich Low_complexity Low_complexity 1 37 0 247 274 14 41 chr4 73760277 73760350 -128567997 + L2 LINE L2 3202 3272 0 23 0 0 0 chr4 73760559 73760582 -128567765 + AT_rich Low_complexity Low_complexity 1 23 0 271 349 47 9 chr4 73761045 73761151 -128567196 + MIR SINE MIR 54 163 -99 369 0 0 0 chr4 73761508 73761549 -128566798 + (TTA)n Simple_repeat Simple_repeat 1 41 0 1695 148 4 4 chr4 73761549 73761813 -128566534 - AluSx SINE Alu -32 280 17 1739 216 50 11 chr4 73761946 73762325 -128566022 - MSTD LTR MaLR 0 396 3 207 133 0 0 chr4 73762334 73762379 -128565968 + (TC)n Simple_repeat Simple_repeat 2 46 0 251 327 45 49 chr4 73765138 73765361 -128562986 - MERVL LTR ERVL -1790 3695 3474 339 316 99 33 chr4 73766004 73766216 -128562131 - MERVL LTR ERVL -3337 2427 2202 1307 167 123 12 chr4 73766250 73766539 -128561808 + AluSg1 SINE Alu 1 317 0 281 312 16 40 chr4 73767509 73767634 -128560713 - Charlie8 DNA MER1_type -2204 213 92 1653 172 83 27 chr4 73768048 73768385 -128559962 + MLT1A1 LTR MaLR 10 365 0 369 346 78 29 chr4 73768507 73768750 -128559597 - MLT1K LTR MaLR -7 581 327 438 223 214 15 chr4 73768948 73769154 -128559193 + MER114 LTR ERV 400 646 -2 958 238 26 66 chr4 73769198 73769500 -128558847 - MLT1C LTR MaLR 0 467 178 1331 188 17 0 chr4 73769511 73769750 -128558597 - AluJb SINE Alu -12 300 58 2602 173 19 6 chr4 73769917 73770396 -128557951 + MER31A LTR ERV1 1 485 0 702 260 114 3 chr4 73770532 73770893 -128557454 - L1M4 LINE L1 -823 5323 4923 240 330 119 36 chr4 73771436 73771630 -128556717 - L2 LINE L2 -615 2699 2490 1523 254 108 24 chr4 73771635 73772064 -128556283 - MLT1C LTR MaLR 0 467 6 1314 333 99 29 chr4 73772071 73772977 -128555370 - L2 LINE L2 -833 2481 1512 372 300 15 0 chr4 73773313 73773443 -128554904 + MER94 DNA DNA 2 133 -1 21 0 0 0 chr4 73773812 73773833 -128554514 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr4 73774849 73774879 -128553468 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 399 221 29 48 chr4 73775188 73775292 -128553055 + MER5B DNA MER1_type 76 177 -1 1745 38 0 0 chr4 73775297 73775509 -128552838 + L1PA4 LINE L1 5941 6152 -3 24 67 0 0 chr4 73777184 73777229 -128551118 + AT_rich Low_complexity Low_complexity 1 45 0 249 296 64 64 chr4 73777900 73778120 -128550227 + L2 LINE L2 3049 3268 -4 21 82 0 0 chr4 73778715 73778764 -128549583 + AT_rich Low_complexity Low_complexity 1 49 0 208 180 20 0 chr4 73778813 73778863 -128549484 + (TTA)n Simple_repeat Simple_repeat 3 53 0 13297 37 1 1 chr4 73779703 73782087 -128546260 + L1PA4 LINE L1 3765 6147 -8 423 228 37 59 chr4 73782124 73782260 -128546087 - L2 LINE L2 0 3313 3181 24 0 0 0 chr4 73783105 73783129 -128545218 + AT_rich Low_complexity Low_complexity 1 24 0 336 48 0 0 chr4 73783754 73783796 -128544551 + (TA)n Simple_repeat Simple_repeat 1 42 0 457 307 116 23 chr4 73784811 73785026 -128543321 - MIR SINE MIR -14 248 14 21 0 0 0 chr4 73785060 73785081 -128543266 + AT_rich Low_complexity Low_complexity 1 21 0 225 393 9 9 chr4 73785163 73785270 -128543077 - L2 LINE L2 -220 3052 2946 1752 201 22 17 chr4 73786540 73786943 -128541404 + L1MA9 LINE L1 5873 6277 -35 2267 59 38 0 chr4 73789044 73789332 -128539015 + AluY SINE Alu 2 300 -11 1245 33 0 0 chr4 73789356 73789507 -128538840 + L1PA5 LINE L1 6002 6152 -2 336 167 0 0 chr4 73790381 73790435 -128537912 - MER20 DNA MER1_type 0 219 166 398 176 0 0 chr4 73790439 73790507 -128537840 + Tigger1 DNA MER2_type 2351 2418 0 14499 240 17 19 chr4 73790542 73793963 -128534384 - L1PA15 LINE L1 0 7603 4175 2106 197 26 2 chr4 73793963 73794380 -128533967 - MSTA LTR MaLR -1 427 1 14499 240 17 19 chr4 73794380 73794837 -128533510 - L1PA15 LINE L1 -3428 4175 3718 207 0 0 0 chr4 73794837 73794860 -128533487 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 14499 240 17 19 chr4 73794860 73795138 -128533209 - L1PA15 LINE L1 -3885 3718 3441 198 0 0 0 chr4 73795138 73795160 -128533187 + (TG)n Simple_repeat Simple_repeat 1 22 0 14499 240 17 19 chr4 73795160 73797414 -128530933 - L1PA15 LINE L1 -4162 3441 1209 518 217 48 24 chr4 73797431 73797597 -128530750 - MER20 DNA MER1_type -39 180 11 934 342 101 21 chr4 73797723 73798305 -128530042 + L2 LINE L2 861 1489 -1825 3951 172 21 3 chr4 73798361 73799105 -128529242 - L1MA5 LINE L1 -4 6296 5539 1166 88 6 0 chr4 73799105 73799264 -128529083 + MER41A LTR ERV1 6 165 -389 * 1337 83 0 0 chr4 73799261 73799442 -128528905 + MER41B LTR ERV1 455 635 0 957 160 76 27 chr4 73799442 73799664 -128528683 - L1MA5 LINE L1 -750 5396 5308 766 264 29 25 chr4 73799966 73800208 -128528139 + MER58B DNA MER1_type 84 326 -15 25 0 0 0 chr4 73800910 73800935 -128527412 + AT_rich Low_complexity Low_complexity 1 25 0 305 289 10 48 chr4 73800982 73801086 -128527261 - L2 LINE L2 0 3313 3214 3147 158 54 8 chr4 73801788 73802372 -128525975 - MER4D LTR ERV1 -7 896 286 959 191 6 0 chr4 73802372 73802545 -128525802 + LTR18B LTR ERVL 3 176 -438 608 224 76 33 chr4 73802685 73802895 -128525452 + LTR18B LTR ERVL 383 601 -13 1614 130 23 43 chr4 73802896 73803196 -128525151 - MER4D LTR ERV1 -609 294 1 2420 87 0 0 chr4 73803707 73804018 -128524329 - AluY SINE Alu 0 311 1 2805 166 93 32 chr4 73804171 73804916 -128523431 - LTR1B LTR ERV1 0 785 1 453 248 65 26 chr4 73805129 73805282 -128523065 - MER5A DNA MER1_type -4 185 27 21 0 0 0 chr4 73805419 73805440 -128522907 + AT_rich Low_complexity Low_complexity 1 21 0 1697 219 61 73 chr4 73806660 73807221 -128521126 - MLT2B3 LTR ERVL 0 554 1 208 333 14 0 chr4 73808248 73808320 -128520027 + MER5A DNA MER1_type 9 81 -108 512 311 130 49 chr4 73809628 73810036 -128518311 - L2 LINE L2 -1 3312 2872 233 374 37 20 chr4 73811057 73811351 -128516996 + L2 LINE L2 1990 2288 -1026 201 221 0 0 chr4 73811631 73811699 -128516648 + GA-rich Low_complexity Low_complexity 3 70 0 249 290 0 0 chr4 73812320 73812382 -128515965 + A-rich Low_complexity Low_complexity 4 65 0 1249 233 3 23 chr4 73812457 73812758 -128515589 + AluJo SINE Alu 1 295 -7 845 158 0 7 chr4 73813115 73813254 -128515093 - FLAM_C SINE Alu -5 138 1 448 276 39 33 chr4 73813257 73813438 -128514909 - MER5A DNA MER1_type -7 182 1 21 0 0 0 chr4 73813725 73813746 -128514601 + AT_rich Low_complexity Low_complexity 1 21 0 2311 90 0 31 chr4 73815267 73815590 -128512757 - AluSp SINE Alu 0 313 1 206 260 41 55 chr4 73817351 73817424 -128510923 + MIR SINE MIR 60 131 -77 21 0 0 0 chr4 73817598 73817619 -128510728 + AT_rich Low_complexity Low_complexity 1 21 0 315 346 24 0 chr4 73819526 73819654 -128508693 + MIR SINE MIR 28 161 -74 200 333 21 32 chr4 73819789 73819882 -128508465 + MER5A DNA MER1_type 8 99 -90 744 314 169 25 chr4 73821171 73821703 -128506644 - L2 LINE L2 -5 3308 2692 21 0 0 0 chr4 73821790 73821811 -128506536 + AT_rich Low_complexity Low_complexity 1 21 0 192 125 0 0 chr4 73822135 73822167 -128506180 + (TAA)n Simple_repeat Simple_repeat 2 33 0 217 104 15 60 chr4 73822468 73822535 -128505812 + (TA)n Simple_repeat Simple_repeat 2 65 0 240 237 0 17 chr4 73823823 73823882 -128504465 + GA-rich Low_complexity Low_complexity 3 60 0 512 257 56 34 chr4 73824260 73824439 -128503908 - MER5A DNA MER1_type -6 183 1 23 68 0 0 chr4 73824862 73824906 -128503441 + AT_rich Low_complexity Low_complexity 1 44 0 405 321 23 56 chr4 73825453 73825668 -128502679 + MIR SINE MIR 15 222 -40 351 297 40 0 chr4 73825730 73825831 -128502516 + MER5A DNA MER1_type 8 112 -77 21 0 0 0 chr4 73826268 73826289 -128502058 + AT_rich Low_complexity Low_complexity 1 21 0 1378 234 42 47 chr4 73827074 73827475 -128500872 - MER92A LTR ERV1 -13 399 1 13636 182 29 13 chr4 73828155 73828514 -128499833 - L1PB1 LINE L1 0 6867 6515 462 101 0 0 chr4 73828514 73828583 -128499764 + (TA)n Simple_repeat Simple_repeat 2 70 0 13636 182 29 13 chr4 73828583 73832167 -128496180 - L1PB1 LINE L1 -352 6515 2802 1864 140 7 4 chr4 73832167 73832481 -128495866 - AluSc SINE Alu 0 317 3 13636 182 29 13 chr4 73832481 73833742 -128494605 - L1PB1 LINE L1 -4065 2802 1563 * 33906 45 30 2 chr4 73833741 73838021 -128490326 - L1P LINE L1 -1743 4403 1 1709 200 102 58 chr4 73838302 73838783 -128489564 - MLT1D LTR MaLR -3 502 1 189 345 69 35 chr4 73838873 73838989 -128489358 + L3 LINE CR1 1454 1573 -4 7579 28 0 1 chr4 73839710 73840965 -128487382 + L1PA4 LINE L1 4930 6152 -3 911 309 131 17 chr4 73841748 73842283 -128486064 - L2 LINE L2 -5 3308 2697 30 93 0 0 chr4 73843014 73843100 -128485247 + AT_rich Low_complexity Low_complexity 1 86 0 267 232 0 0 chr4 73843749 73843831 -128484516 + GA-rich Low_complexity Low_complexity 1 82 0 1206 225 10 27 chr4 73844587 73844880 -128483467 + AluJo SINE Alu 6 293 -19 23 0 0 0 chr4 73845244 73845267 -128483080 + AT_rich Low_complexity Low_complexity 1 23 0 1185 153 43 0 chr4 73845413 73845622 -128482725 - L1PA8 LINE L1 -1 6171 5954 414 312 26 13 chr4 73845698 73845852 -128482495 - MER5A DNA MER1_type -6 183 28 29 0 0 0 chr4 73847233 73847262 -128481085 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 73847885 73847914 -128480433 + AT_rich Low_complexity Low_complexity 1 29 0 1043 218 0 55 chr4 73848701 73848972 -128479375 + AluJo SINE Alu 14 269 -43 210 279 13 51 chr4 73849644 73849723 -128478624 + MIR SINE MIR 60 135 -73 3023 139 2 0 chr4 73851761 73852257 -128476090 - L1PA8A LINE L1 -1299 4847 4351 5681 100 20 1 chr4 73852257 73853493 -128474854 + L1PA8A LINE L1 4848 6103 -28 182 31 0 62 chr4 73853499 73853531 -128474816 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 251 262 104 92 chr4 73853563 73853727 -128474620 + MIR SINE MIR 17 182 -80 214 339 0 0 chr4 73853834 73853893 -128474454 + MER5A DNA MER1_type 8 66 -123 9589 62 5 105 chr4 73855270 73856805 -128471542 + SVA Other Other 5 1386 0 591 250 18 15 chr4 73856838 73857077 -128471270 - L1 LINE L1 -2767 3379 3144 5311 231 2 1 chr4 73857078 73858089 -128470258 - L1PA15-16 LINE L1 -5837 1012 1 4105 92 30 7 chr4 73858138 73858728 -128469619 - L1PA7 LINE L1 -1 6153 5550 8454 167 25 28 chr4 73858741 73860385 -128467962 - L1P LINE L1 -4497 1649 11 2163 136 56 5 chr4 73860397 73860773 -128467574 - MER4E-int LTR ERV1 -3936 2822 2428 1202 158 21 55 chr4 73860774 73861103 -128467244 - MER4E-int LTR ERV1 -4606 2152 1835 * 2504 182 18 7 chr4 73861100 73861555 -128466792 - MER4E-int LTR ERV1 -6060 698 239 1822 133 11 14 chr4 73861598 73861884 -128466463 - MER4E-int LTR ERV1 -6473 285 1 1304 130 4 30 chr4 73861884 73862114 -128466233 - MER4E LTR ERV1 0 766 543 433 253 11 86 chr4 73863747 73863824 -128464523 + MIR SINE MIR 14 72 -190 2104 147 31 3 chr4 73863824 73864178 -128464169 - THE1B LTR MaLR 0 364 1 433 253 11 86 chr4 73864178 73864274 -128464073 + MIR SINE MIR 72 174 -88 188 321 57 0 chr4 73864978 73865031 -128463316 - L2 LINE L2 -8 3305 3250 306 0 0 0 chr4 73865721 73865755 -128462592 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1950 47 0 0 chr4 73865755 73865991 -128462356 - L1PA4 LINE L1 -18 6137 5902 298 200 0 30 chr4 73866015 73866115 -128462232 + GA-rich Low_complexity Low_complexity 3 99 0 211 213 0 21 chr4 73866699 73866746 -128461601 + GA-rich Low_complexity Low_complexity 3 48 0 1127 215 15 23 chr4 73866828 73867088 -128461259 + AluJo SINE Alu 6 263 -49 210 71 0 0 chr4 73867394 73867422 -128460925 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1281 103 41 0 chr4 73867424 73867619 -128460728 - L1PA8 LINE L1 -12 6160 5958 430 298 32 32 chr4 73867694 73867882 -128460465 - MER5A DNA MER1_type -1 188 1 1096 97 0 0 chr4 73869110 73869265 -128459082 - L1PA8 LINE L1 -1 6171 6017 24 53 0 0 chr4 73869529 73869567 -128458780 + AT_rich Low_complexity Low_complexity 1 38 0 1104 187 3 88 chr4 73871014 73871308 -128457039 + AluJo SINE Alu 1 269 -43 204 282 13 39 chr4 73871989 73872067 -128456280 + MIR SINE MIR 60 135 -73 234 91 0 0 chr4 73872077 73872110 -128456237 + (TCC)n Simple_repeat Simple_repeat 3 35 0 29 0 0 0 chr4 73872616 73872645 -128455702 + AT_rich Low_complexity Low_complexity 1 29 0 3211 117 4 0 chr4 73874093 73874590 -128453757 - L1PA8A LINE L1 -1297 4849 4351 5840 98 12 1 chr4 73874590 73875849 -128452498 + L1PA8A LINE L1 4848 6118 -13 195 42 0 0 chr4 73875854 73875878 -128452469 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 213 286 22 44 chr4 73875952 73876043 -128452304 + MIR SINE MIR 86 174 -88 571 332 140 9 chr4 73877580 73877908 -128450439 - L2 LINE L2 -7 3306 2936 5491 228 29 17 chr4 73877919 73878876 -128449471 - L1 LINE L1 -1481 4665 3680 306 67 0 0 chr4 73878876 73878921 -128449426 + (TG)n Simple_repeat Simple_repeat 2 46 0 5491 228 29 17 chr4 73878921 73879493 -128448854 - L1 LINE L1 -2466 3680 3117 1977 121 14 0 chr4 73879506 73879667 -128448680 - AluSq SINE Alu -27 286 118 243 0 0 0 chr4 73879667 73879694 -128448653 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1977 121 14 0 chr4 73879694 73879814 -128448533 - AluSq SINE Alu -195 118 1 10240 126 31 13 chr4 73879815 73881464 -128446883 - MER4B-int LTR ERV1 -2651 4107 2429 1323 140 6 62 chr4 73881467 73881803 -128446544 - MER4B-int LTR ERV1 -4607 2151 1835 * 2813 156 15 4 chr4 73881800 73882256 -128446091 - MER4B-int LTR ERV1 -6060 698 238 926 44 0 0 chr4 73882338 73882451 -128445896 + AluSp/q SINE Alu 187 299 -14 1692 114 12 12 chr4 73882451 73882706 -128445641 - MER4B-int LTR ERV1 -6503 255 1 2820 143 44 37 chr4 73882706 73883307 -128445040 - MER4B LTR ERV1 0 779 1 2109 294 83 29 chr4 73883504 73884593 -128443754 - L1MEc LINE L1 -5213 1183 36 833 315 104 20 chr4 73884593 73885100 -128443247 + L2 LINE L2 2765 3308 -5 26 50 0 0 chr4 73885128 73885168 -128443179 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr4 73885938 73885969 -128442378 + AT_rich Low_complexity Low_complexity 1 31 0 207 313 113 17 chr4 73886059 73886174 -128442173 + MIR SINE MIR 121 246 -16 353 319 42 30 chr4 73886839 73887005 -128441342 - MIR3 SINE MIR -25 183 16 189 147 0 0 chr4 73888066 73888100 -128440247 + (TA)n Simple_repeat Simple_repeat 2 35 0 22 94 0 0 chr4 73889617 73889681 -128438666 + AT_rich Low_complexity Low_complexity 1 64 0 26 93 0 0 chr4 73890378 73890453 -128437894 + AT_rich Low_complexity Low_complexity 1 75 0 459 225 25 33 chr4 73890574 73890694 -128437653 - L2 LINE L2 0 3313 3195 21 0 0 0 chr4 73890953 73890974 -128437373 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr4 73891015 73891047 -128437300 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 73891312 73891333 -128437014 + AT_rich Low_complexity Low_complexity 1 21 0 688 269 11 0 chr4 73891674 73891860 -128436487 + MER5A DNA MER1_type 1 188 -1 21 0 0 0 chr4 73892491 73892512 -128435835 + AT_rich Low_complexity Low_complexity 1 21 0 754 202 0 0 chr4 73892885 73893014 -128435333 + FLAM_C SINE Alu 1 129 -4 255 235 88 39 chr4 73893244 73893346 -128435001 + MIR SINE MIR 100 206 -56 7681 25 0 0 chr4 73894079 73895466 -128432881 - L1PA3 LINE L1 -3 6152 4766 8109 75 0 8 chr4 73895466 73896534 -128431813 + L1P LINE L1 97 1156 -4990 36 62 0 0 chr4 73897137 73897201 -128431146 + AT_rich Low_complexity Low_complexity 1 64 0 293 138 6 6 chr4 73897225 73897289 -128431058 - Alu SINE Alu -259 42 1 268 253 44 22 chr4 73897622 73897713 -128430634 + MER102a DNA MER1_type 222 314 -16 685 34 23 0 chr4 73897898 73897986 -128430361 - L1PA4 LINE L1 -1 6154 6065 345 140 0 0 chr4 73898268 73898325 -128430022 + (TA)n Simple_repeat Simple_repeat 2 58 0 22 35 0 0 chr4 73898371 73898400 -128429947 + AT_rich Low_complexity Low_complexity 1 29 0 295 320 63 53 chr4 73898699 73898905 -128429442 + MIR SINE MIR 13 220 -42 22 0 0 0 chr4 73899777 73899799 -128428548 + AT_rich Low_complexity Low_complexity 1 22 0 2246 100 7 0 chr4 73900385 73900740 -128427607 + AluSq SINE Alu 1 357 0 27 49 0 0 chr4 73901435 73901476 -128426871 + AT_rich Low_complexity Low_complexity 1 41 0 959 57 0 0 chr4 73901654 73901776 -128426571 + L1PA5 LINE L1 6033 6154 0 726 311 20 12 chr4 73902037 73902285 -128426062 - MIR SINE MIR 0 262 13 511 326 72 37 chr4 73904025 73904399 -128423948 - L2 LINE L2 -5 3308 2922 5323 67 3 0 chr4 73904611 73905301 -128423046 - L1PA7 LINE L1 0 6154 5463 3206 121 8 9 chr4 73905301 73905859 -128422488 + L1PA7 LINE L1 4919 5467 -743 22 0 0 0 chr4 73906088 73906110 -128422237 + AT_rich Low_complexity Low_complexity 1 22 0 2155 207 29 2 chr4 73906674 73907161 -128421186 - L1MA4 LINE L1 -1 6299 5800 2432 77 3 0 chr4 73907268 73907578 -128420769 - AluY SINE Alu 0 311 1 189 260 40 0 chr4 73907626 73907676 -128420671 + L2 LINE L2 3262 3313 0 2016 137 0 28 chr4 73907723 73908044 -128420303 + AluSx SINE Alu 1 312 0 348 18 53 18 chr4 73908053 73908110 -128420237 + (GAAAA)n Simple_repeat Simple_repeat 2 60 0 416 171 0 0 chr4 73909189 73909265 -128419082 + MADE1 DNA Mariner 3 78 -2 333 0 0 0 chr4 73910510 73910547 -128417800 + (TA)n Simple_repeat Simple_repeat 1 37 0 258 65 0 65 chr4 73910960 73910973 -128417374 + MADE1 DNA Mariner 38 50 -30 1942 121 10 0 chr4 73910973 73911271 -128417076 - L1PB1 LINE L1 -4 6147 5847 258 65 0 65 chr4 73911271 73911303 -128417044 + MADE1 DNA Mariner 50 80 0 508 299 71 41 chr4 73912894 73913188 -128415159 - LTR16B LTR ERVL 0 464 162 488 286 12 24 chr4 73913406 73913574 -128414773 - MIR SINE MIR -15 247 82 351 351 27 14 chr4 73914224 73914372 -128413975 - MIR SINE MIR -65 197 48 206 404 45 19 chr4 73914461 73914617 -128413730 + L3 LINE CR1 1405 1564 -13 23 0 0 0 chr4 73914699 73914722 -128413625 + AT_rich Low_complexity Low_complexity 1 23 0 4810 92 8 86 chr4 73914726 73915114 -128413233 - L1PB1 LINE L1 -1 6150 5860 2108 149 43 3 chr4 73915114 73915464 -128412883 - THE1B LTR MaLR 0 364 1 4810 92 8 86 chr4 73915464 73915909 -128412438 - L1PB1 LINE L1 -291 5860 5382 4586 200 15 22 chr4 73915906 73916953 -128411394 + L1 LINE L1 3445 4484 -1662 * 924 211 81 9 chr4 73917076 73917299 -128411048 + MER8 DNA MER2_type 1 239 0 212 247 27 27 chr4 73918694 73918767 -128409580 - MIR SINE MIR -10 252 180 863 215 4 60 chr4 73918882 73919007 -128409340 + L1 LINE L1 2281 2387 -3759 2410 62 0 7 chr4 73919007 73919311 -128409036 + AluY SINE Alu 1 302 -9 863 215 4 60 chr4 73919311 73919436 -128408911 + L1 LINE L1 2387 2517 -3629 * 7267 196 48 37 chr4 73919429 73921332 -128407015 + L1 LINE L1 3324 5247 -899 223 302 16 0 chr4 73921343 73921406 -128406941 - MIR SINE MIR -106 156 93 298 397 35 0 chr4 73921481 73921655 -128406692 + L2 LINE L2 2060 2239 -1075 198 71 0 0 chr4 73922492 73922520 -128405827 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 4193 149 53 5 chr4 73922525 73923324 -128405023 - L1MA8 LINE L1 -19 6272 5436 220 235 12 12 chr4 73923473 73923558 -128404789 + GA-rich Low_complexity Low_complexity 4 88 0 41 36 0 0 chr4 73923845 73923900 -128404447 + AT_rich Low_complexity Low_complexity 1 55 0 261 240 0 0 chr4 73923931 73924006 -128404341 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 24 53 0 0 chr4 73924183 73924221 -128404126 + AT_rich Low_complexity Low_complexity 1 38 0 1272 173 4 0 chr4 73924225 73924456 -128403891 - L1MA6 LINE L1 -16 6284 6053 1364 35 0 12 chr4 73924460 73924630 -128403717 - L1PA2 LINE L1 0 6155 5988 3168 8 0 0 chr4 73924630 73924987 -128403360 + L1PA2 LINE L1 5639 5995 -160 1253 19 6 0 chr4 73924987 73925144 -128403203 + L1P LINE L1 5191 5348 -798 959 164 26 20 chr4 73925136 73925331 -128403016 - L1MA6 LINE L1 -231 6069 5874 * 21 36 0 0 chr4 73925351 73925379 -128402968 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 73926424 73926446 -128401901 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 73926664 73926685 -128401662 + AT_rich Low_complexity Low_complexity 1 21 0 216 330 93 8 chr4 73926705 73926823 -128401524 + L2 LINE L2 3186 3313 0 31 26 0 0 chr4 73927845 73927883 -128400464 + AT_rich Low_complexity Low_complexity 1 38 0 1247 269 84 42 chr4 73928190 73928784 -128399563 + L1ME2 LINE L1 5424 6042 -122 23 54 0 0 chr4 73929196 73929233 -128399114 + AT_rich Low_complexity Low_complexity 1 37 0 3398 53 7 0 chr4 73929770 73930200 -128398147 - L1PA5 LINE L1 -1 6153 5721 10858 46 3 9 chr4 73930352 73932101 -128396246 - L1P2 LINE L1 -396 5758 4021 307 292 100 15 chr4 73932695 73932825 -128395522 + MER5B DNA MER1_type 6 146 -32 956 318 163 19 chr4 73933302 73934178 -128394169 + L2 LINE L2 2295 3297 -16 310 224 0 31 chr4 73935728 73935826 -128392521 - HAL1 LINE L1 -429 2078 1984 880 264 83 25 chr4 73935861 73936138 -128392209 - MLT1L LTR MaLR -8 607 315 236 167 0 19 chr4 73936154 73936208 -128392139 + T-rich Low_complexity Low_complexity 2 54 0 6882 51 1 0 chr4 73936226 73937074 -128391273 - L1PA5 LINE L1 -3 6151 5303 1613 200 3 0 chr4 73937075 73937365 -128390982 - AluJo SINE Alu -21 291 1 1401 115 0 5 chr4 73937377 73937568 -128390779 - AluSg/x SINE Alu -14 298 109 722 82 0 0 chr4 73937634 73937732 -128390615 - AluY SINE Alu -213 98 1 1434 293 65 40 chr4 73938480 73939076 -128389271 + L1MA8 LINE L1 481 1573 -5923 * 2591 279 54 27 chr4 73939052 73940198 -128388149 + L1MA8 LINE L1 1877 3053 -4512 6343 212 38 25 chr4 73940347 73942215 -128386132 + L1MA8 LINE L1 3280 5179 -2386 3853 165 53 42 chr4 73942209 73943184 -128385163 + L1MA8 LINE L1 5965 7124 -586 * 286 143 0 0 chr4 73943184 73943226 -128385121 - tRNA-Lys-AAG tRNA tRNA -34 42 1 3853 165 53 42 chr4 73943226 73943756 -128384591 + L1MA8 LINE L1 7124 7647 -63 483 18 0 0 chr4 73943781 73943837 -128384510 + (TA)n Simple_repeat Simple_repeat 2 57 0 235 175 18 0 chr4 73943859 73943916 -128384431 + L1MA8 LINE L1 7652 7709 -1 26 74 0 0 chr4 73943986 73944040 -128384307 + AT_rich Low_complexity Low_complexity 1 54 0 182 275 0 0 chr4 73944760 73944800 -128383547 + L2 LINE L2 3215 3254 -18 26 64 0 0 chr4 73944982 73945029 -128383318 + AT_rich Low_complexity Low_complexity 1 47 0 23 54 0 0 chr4 73945231 73945268 -128383079 + AT_rich Low_complexity Low_complexity 1 37 0 281 279 114 0 chr4 73945694 73945773 -128382574 + L2 LINE L2 3226 3313 0 25 75 0 0 chr4 73945866 73945919 -128382428 + AT_rich Low_complexity Low_complexity 1 53 0 219 69 0 0 chr4 73946718 73946747 -128381600 + (CA)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr4 73948292 73948314 -128380033 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr4 73948439 73948473 -128379874 + AT_rich Low_complexity Low_complexity 1 34 0 191 295 181 0 chr4 73949456 73949561 -128378786 - L2 LINE L2 0 3313 3190 25 0 0 0 chr4 73950187 73950212 -128378135 + AT_rich Low_complexity Low_complexity 1 25 0 249 234 26 52 chr4 73950532 73950609 -128377738 + MER5A DNA MER1_type 1 75 -114 292 321 9 18 chr4 73950880 73950989 -128377358 + MER102a DNA MER1_type 209 316 -14 30 45 0 0 chr4 73950998 73951042 -128377305 + AT_rich Low_complexity Low_complexity 1 44 0 32 26 0 0 chr4 73951071 73951110 -128377237 + AT_rich Low_complexity Low_complexity 1 39 0 2421 65 3 0 chr4 73951511 73951819 -128376528 + AluSc SINE Alu 1 309 0 1938 121 30 18 chr4 73952127 73952458 -128375889 + MER1B DNA MER1_type 3 337 0 356 294 206 20 chr4 73952507 73952711 -128375636 + MIR SINE MIR 20 261 -1 1977 121 7 0 chr4 73953751 73954040 -128374307 + AluSx SINE Alu 1 291 -21 188 297 29 101 chr4 73954169 73954307 -128374040 - MIR SINE MIR -44 218 91 28 61 0 0 chr4 73954535 73954584 -128373763 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr4 73955311 73955347 -128373000 + AT_rich Low_complexity Low_complexity 1 36 0 275 278 78 26 chr4 73956064 73956294 -128372053 - L1MC/D LINE L1 -1985 5823 5582 236 250 83 79 chr4 73956709 73956925 -128371422 - L1ME3 LINE L1 -212 5950 5734 21 0 0 0 chr4 73957700 73957721 -128370626 + AT_rich Low_complexity Low_complexity 1 21 0 1899 128 43 13 chr4 73957773 73958077 -128370270 + AluSq SINE Alu 1 313 0 27 73 0 0 chr4 73958114 73958169 -128370178 + AT_rich Low_complexity Low_complexity 1 55 0 208 356 0 11 chr4 73958227 73958317 -128370030 - L2 LINE L2 -2 3311 3223 255 31 0 0 chr4 73959590 73959622 -128368725 + (TC)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr4 73961255 73961276 -128367071 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 73961653 73961682 -128366665 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 73961797 73961825 -128366522 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 73961934 73961959 -128366388 + AT_rich Low_complexity Low_complexity 1 25 0 387 287 9 0 chr4 73962459 73962574 -128365773 - MIR SINE MIR 0 262 147 4366 121 9 0 chr4 73962579 73963251 -128365096 - L1PB1 LINE L1 -3 6148 5471 2040 178 12 2 chr4 73963257 73963855 -128364492 + L1PB1 LINE L1 4873 5478 -673 197 321 36 66 chr4 73963870 73964007 -128364340 - MIR SINE MIR -128 134 2 2178 88 3 27 chr4 73964256 73964553 -128363794 - AluSq SINE Alu -11 302 13 196 30 61 0 chr4 73964999 73965032 -128363315 + (TAA)n Simple_repeat Simple_repeat 2 36 0 209 262 49 0 chr4 73965231 73965292 -128363055 - MIR SINE MIR -25 237 174 225 321 68 26 chr4 73966553 73966743 -128361604 + L2 LINE L2 923 1120 -2194 268 198 42 10 chr4 73967230 73967326 -128361021 + (TTA)n Simple_repeat Simple_repeat 1 99 0 379 22 0 0 chr4 73968141 73968187 -128360160 + MADE1 DNA Mariner 35 80 0 225 157 14 43 chr4 73968266 73968336 -128360011 + GA-rich Low_complexity Low_complexity 1 68 0 437 300 39 51 chr4 73968359 73968774 -128359573 + L1MC4a LINE L1 5937 6351 -1457 1204 242 9 6 chr4 73968775 73969114 -128359233 - L1MCc LINE L1 -3217 3724 3385 713 232 73 36 chr4 73969116 73969381 -128358966 - L1MCc LINE L1 -4690 2253 1952 216 97 0 0 chr4 73969381 73969412 -128358935 + (TG)n Simple_repeat Simple_repeat 2 32 0 713 232 73 36 chr4 73969412 73969540 -128358807 - L1MCc LINE L1 -4991 1952 1830 891 245 105 27 chr4 73969562 73970024 -128358323 - L1MCc LINE L1 -4887 1536 1196 719 0 0 0 chr4 73970793 73970872 -128357475 + L1HS LINE L1 6053 6131 -24 356 0 0 22 chr4 73970872 73970917 -128357430 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 27 0 0 0 chr4 73970939 73970966 -128357381 + AT_rich Low_complexity Low_complexity 1 27 0 213 214 36 0 chr4 73971792 73971848 -128356499 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 2166 120 14 14 chr4 73971853 73972203 -128356144 - L1PA16 LINE L1 -9 6157 5808 21 0 0 0 chr4 73972212 73972233 -128356114 + AT_rich Low_complexity Low_complexity 1 21 0 219 216 14 27 chr4 73973555 73973629 -128354718 + (TAATG)n Simple_repeat Simple_repeat 3 75 0 380 323 15 0 chr4 73973667 73973797 -128354550 + MIR SINE MIR 113 244 -18 2361 34 7 14 chr4 73974073 73974366 -128353981 - AluY SINE Alu -17 294 4 231 88 0 0 chr4 73974385 73974419 -128353928 + (CA)n Simple_repeat Simple_repeat 2 35 0 875 29 0 0 chr4 73975597 73975701 -128352646 - L1PA5 LINE L1 -6 6148 6045 214 224 143 31 chr4 73975951 73976049 -128352298 + L2 LINE L2 3205 3313 0 32 0 0 0 chr4 73976135 73976167 -128352180 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr4 73976208 73976232 -128352115 + AT_rich Low_complexity Low_complexity 1 24 0 1847 98 0 8 chr4 73976232 73976487 -128351860 - AluSc SINE Alu -24 285 33 1056 275 94 13 chr4 73977713 73978095 -128350252 - L1ME1 LINE L1 -5 6230 5818 447 225 58 14 chr4 73978107 73978245 -128350102 - L1ME1 LINE L1 -1963 4252 4109 775 284 111 29 chr4 73978401 73978707 -128349640 - L1ME1 LINE L1 -5648 748 418 1243 181 41 33 chr4 73978738 73979009 -128349338 - L1PA16 LINE L1 -10 6156 5884 701 276 86 44 chr4 73979008 73979106 -128349241 - L1ME1 LINE L1 -6017 379 287 * 321 26 0 0 chr4 73979106 73979144 -128349203 + (TC)n Simple_repeat Simple_repeat 2 39 0 279 0 0 0 chr4 73979143 73979174 -128349173 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 701 276 86 44 chr4 73979144 73979390 -128348957 - L1ME1 LINE L1 -6109 287 52 534 103 0 0 chr4 73979856 73979934 -128348413 + (TA)n Simple_repeat Simple_repeat 1 78 0 214 398 48 11 chr4 73979961 73980147 -128348200 - L2 LINE L2 -453 2861 2669 25 75 0 0 chr4 73981520 73981573 -128346774 + AT_rich Low_complexity Low_complexity 1 53 0 572 332 74 60 chr4 73981849 73982013 -128346334 + L2 LINE L2 2461 2621 -692 2024 121 3 3 chr4 73982013 73982311 -128346036 - AluSc SINE Alu -11 298 1 572 332 74 60 chr4 73982311 73982988 -128345359 + L2 LINE L2 2621 3312 -1 315 259 81 76 chr4 73984734 73984919 -128343428 - L1MD2 LINE L1 -410 5949 5764 198 167 0 0 chr4 73985043 73985079 -128343268 + (TATG)n Simple_repeat Simple_repeat 4 39 0 6758 25 0 1 chr4 73986199 73986993 -128341354 + L1PA3 LINE L1 5363 6155 0 23 0 0 0 chr4 73986994 73987017 -128341330 + AT_rich Low_complexity Low_complexity 1 23 0 339 358 50 20 chr4 73987559 73987760 -128340587 + MIR SINE MIR 2 208 -54 204 279 199 59 chr4 73988031 73988167 -128340180 - MIR SINE MIR -42 220 66 303 195 49 12 chr4 73988677 73988759 -128339588 - MLT1J2 LTR MaLR -295 155 71 219 350 93 7 chr4 73989399 73989539 -128338808 - L2 LINE L2 -4 3309 3158 1628 186 3 7 chr4 73989618 73989908 -128338439 + AluJo SINE Alu 3 291 -21 2944 139 102 42 chr4 73989993 73990570 -128337777 - MER6A DNA MER2_type -1 604 253 243 341 135 0 chr4 73990575 73990701 -128337646 + L1ME3 LINE L1 5436 5578 -586 328 281 23 8 chr4 73990708 73990836 -128337511 + L1ME3 LINE L1 6027 6156 -6 396 304 78 13 chr4 73991059 73991289 -128337058 + L1 LINE L1 4625 4869 -1277 311 323 80 13 chr4 73991325 73991610 -128336737 + L1 LINE L1 4924 5232 -914 1929 188 66 56 chr4 73991620 73992468 -128335879 + L1M4 LINE L1 4787 5619 -565 707 307 42 47 chr4 73992472 73992735 -128335612 + L2 LINE L2 2302 2564 -750 1638 65 65 0 chr4 73992735 73992966 -128335381 - L1MA1 LINE L1 0 6302 6057 707 307 42 47 chr4 73992966 73993132 -128335215 + L2 LINE L2 2564 2729 -585 649 284 122 0 chr4 73993962 73994282 -128334065 - HsTC2 DNA Tc2 -1317 581 223 227 279 23 0 chr4 73994323 73994409 -128333938 - HsTC2 DNA Tc2 -1810 88 1 211 333 128 32 chr4 73994695 73994851 -128333496 + MIR SINE MIR 49 219 -43 24 100 0 0 chr4 73995077 73995157 -128333190 + AT_rich Low_complexity Low_complexity 1 80 0 879 183 22 22 chr4 73995838 73996018 -128332329 + MER6A DNA MER2_type 1 180 -425 * 1876 120 35 0 chr4 73996015 73996299 -128332048 + MER6A DNA MER2_type 309 602 -3 206 366 24 0 chr4 73996641 73996723 -128331624 - L3 LINE CR1 -95 1482 1399 477 199 20 20 chr4 73997033 73997179 -128331168 + C-rich Low_complexity Low_complexity 5 150 0 417 240 40 0 chr4 73997229 73997329 -128331018 - MER5A DNA MER1_type -73 116 13 28 48 0 0 chr4 73998363 73998405 -128329942 + AT_rich Low_complexity Low_complexity 1 42 0 31 26 0 0 chr4 73998912 73998950 -128329397 + AT_rich Low_complexity Low_complexity 1 38 0 1352 316 77 28 chr4 73999075 73999693 -128328654 + L2 LINE L2 2375 3028 -285 521 174 69 35 chr4 73999695 73999839 -128328508 + MER53 DNA DNA 2 150 -39 282 73 0 0 chr4 74000073 74000114 -128328233 + (CA)n Simple_repeat Simple_repeat 1 41 0 26 30 0 0 chr4 74000565 74000598 -128327749 + AT_rich Low_complexity Low_complexity 1 33 0 246 330 34 8 chr4 74000808 74000926 -128327421 - L3b LINE CR1 -359 1224 1104 306 143 0 0 chr4 74002958 74003021 -128325326 + (CA)n Simple_repeat Simple_repeat 1 63 0 494 351 68 16 chr4 74003551 74003742 -128324605 - MIR SINE MIR -4 258 58 227 320 148 8 chr4 74003992 74004120 -128324227 - MIR3 SINE MIR -10 198 53 204 306 69 0 chr4 74004170 74004242 -128324105 + L2 LINE L2 2631 2707 -607 884 261 79 70 chr4 74004254 74004657 -128323690 - MLT1I LTR MaLR 0 409 3 184 244 0 0 chr4 74004865 74004906 -128323441 + L2 LINE L2 2981 3021 -251 338 340 57 6 chr4 74005492 74005651 -128322696 - MIR SINE MIR -90 172 6 1849 165 0 9 chr4 74006795 74007110 -128321237 + AluSx SINE Alu 1 312 0 33 25 0 0 chr4 74007329 74007369 -128320978 + AT_rich Low_complexity Low_complexity 1 40 0 582 311 19 63 chr4 74007541 74007811 -128320536 + MIR SINE MIR 2 259 -3 268 91 23 0 chr4 74008562 74008606 -128319741 - MADE1 DNA Mariner -1 79 35 370 268 107 0 chr4 74008767 74008879 -128319468 + MIR SINE MIR 31 154 -108 276 253 137 0 chr4 74009052 74009147 -128319200 - MER63 DNA MER1_type -328 734 1 21 0 0 0 chr4 74009241 74009262 -128319085 + AT_rich Low_complexity Low_complexity 1 21 0 713 344 70 6 chr4 74009262 74009624 -128318723 - L2 LINE L2 -139 3174 2791 2567 29 0 0 chr4 74009638 74009954 -128318393 - L1P LINE L1 -796 5350 5035 327 282 0 12 chr4 74009974 74010059 -128318288 + GA-rich Low_complexity Low_complexity 6 89 0 202 29 57 0 chr4 74010072 74010107 -128318240 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 197 293 0 35 chr4 74011294 74011352 -128316995 + MIR SINE MIR 19 74 -134 232 385 26 17 chr4 74011372 74011489 -128316858 + L2 LINE L2 3154 3271 -1 229 219 62 0 chr4 74011507 74011571 -128316776 + MIR SINE MIR 97 164 -98 2000 166 25 18 chr4 74012863 74013261 -128315086 - MER57A LTR ERV1 0 403 3 217 200 0 0 chr4 74016204 74016244 -128312103 - L2 LINE L2 -11 3302 3263 205 158 0 26 chr4 74016212 74016250 -128312097 - MIR SINE MIR -13 249 213 * 21 0 0 0 chr4 74017968 74017989 -128310358 + AT_rich Low_complexity Low_complexity 1 21 0 335 278 105 43 chr4 74018283 74018445 -128309902 - MER5B DNA MER1_type 0 178 7 1522 267 92 4 chr4 74020265 74020755 -128307592 - MER90 LTR ERV1 0 614 82 21 0 0 0 chr4 74022045 74022066 -128306281 + AT_rich Low_complexity Low_complexity 1 21 0 2110 62 10 17 chr4 74023643 74023934 -128304413 + L1PA8 LINE L1 5880 6168 -4 2111 224 97 22 chr4 74024019 74024609 -128303738 - L1ME2 LINE L1 -34 6628 5995 368 246 46 5 chr4 74024857 74024994 -128303353 - L1ME2 LINE L1 -704 5960 5838 1007 304 70 38 chr4 74025011 74025811 -128302536 - L1ME2 LINE L1 -4542 2283 1304 37554 90 9 8 chr4 74025913 74032050 -128296297 - L1PA6 LINE L1 0 6154 11 1099 221 56 0 chr4 74032338 74032587 -128295760 - L1PB4 LINE L1 -7 6149 5887 229 355 114 23 chr4 74032587 74032973 -128295374 + L2 LINE L2 2284 2704 -610 291 28 0 0 chr4 74033044 74033080 -128295267 + (CA)n Simple_repeat Simple_repeat 1 36 0 236 361 59 17 chr4 74033398 74033517 -128294830 + L2 LINE L2 3178 3301 -12 192 276 239 22 chr4 74034549 74034683 -128293664 + MIR SINE MIR 66 228 -34 255 311 25 41 chr4 74035366 74035488 -128292859 + L3 LINE CR1 1447 1566 -11 694 169 0 0 chr4 74035877 74035995 -128292352 - L1PB4 LINE L1 -184 5972 5855 216 0 0 0 chr4 74036098 74036122 -128292225 + (A)n Simple_repeat Simple_repeat 1 24 0 557 340 94 28 chr4 74036272 74036696 -128291651 - L1ME2 LINE L1 -5617 1017 566 448 372 91 22 chr4 74036835 74037368 -128290979 + L2 LINE L2 2688 3272 0 1876 110 0 0 chr4 74037530 74037784 -128290563 + AluSc SINE Alu 39 292 -17 22 35 0 0 chr4 74037927 74037956 -128290391 + AT_rich Low_complexity Low_complexity 1 29 0 1996 116 3 10 chr4 74038606 74038898 -128289449 + AluSg1 SINE Alu 1 290 -19 200 367 20 0 chr4 74038911 74039009 -128289338 - MIR SINE MIR -150 112 13 21 0 0 0 chr4 74039343 74039364 -128288983 + AT_rich Low_complexity Low_complexity 1 21 0 255 311 25 41 chr4 74040227 74040349 -128287998 - L3 LINE CR1 -11 1566 1447 192 276 239 22 chr4 74041031 74041165 -128287182 - MIR SINE MIR -34 228 66 307 306 58 25 chr4 74042203 74042324 -128286023 - L2 LINE L2 -11 3302 3178 379 296 0 0 chr4 74042607 74042715 -128285632 - MER112 DNA MER1_type -150 110 3 320 329 214 33 chr4 74042718 74043418 -128284929 - L2 LINE L2 -615 2699 1873 378 0 0 0 chr4 74043478 74043520 -128284827 + (CA)n Simple_repeat Simple_repeat 2 43 0 531 314 50 46 chr4 74043731 74043992 -128284355 + MIR SINE MIR 1 262 0 222 233 0 82 chr4 74045822 74045895 -128282452 + L2 LINE L2 3193 3259 -13 223 184 20 0 chr4 74045895 74045944 -128282403 + (TG)n Simple_repeat Simple_repeat 2 51 0 13238 143 38 33 chr4 74046364 74048748 -128279599 - Tigger1 DNA MER2_type 0 2418 22 593 105 0 0 chr4 74049243 74049329 -128279018 - Tigger1 DNA MER2_type -947 1471 1386 357 91 0 0 chr4 74049547 74049602 -128278745 - L1PA13 LINE L1 -4 6159 6105 6098 145 66 35 chr4 74050003 74050057 -128278290 + Tigger3b DNA MER2_type 29 80 -2948 744 169 16 0 chr4 74050057 74050181 -128278166 + FLAM_C SINE Alu 3 128 -5 6098 145 66 35 chr4 74050181 74051292 -128277055 + Tigger3b DNA MER2_type 80 1230 -1 180 304 0 0 chr4 74053221 74053267 -128275080 - L2 LINE L2 -394 2878 2833 226 202 24 12 chr4 74053471 74053555 -128274792 + (TATAA)n Simple_repeat Simple_repeat 4 88 0 1402 151 58 21 chr4 74054869 74055160 -128273187 - Tigger3(Golem) DNA MER2_type -186 2843 2542 812 127 13 13 chr4 74055200 74055350 -128272997 - Tigger3(Golem) DNA MER2_type -596 2433 2284 521 221 29 0 chr4 74055350 74055454 -128272893 - Tigger3(Golem) DNA MER2_type -2921 108 2 216 293 98 12 chr4 74055647 74055729 -128272618 - L2 LINE L2 -188 3084 2996 1228 351 115 25 chr4 74056745 74058118 -128270229 - L2 LINE L2 -2 3311 1817 335 336 10 10 chr4 74059412 74059516 -128268831 + L2 LINE L2 3192 3295 -18 21 0 0 0 chr4 74060411 74060432 -128267915 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 74060645 74060674 -128267673 + AT_rich Low_complexity Low_complexity 1 29 0 29 70 0 0 chr4 74060844 74060901 -128267446 + AT_rich Low_complexity Low_complexity 1 57 0 356 39 0 20 chr4 74060962 74061013 -128267334 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 1281 25 6 19 chr4 74061013 74061175 -128267172 - L1PA2 LINE L1 -24 6131 5972 411 297 47 16 chr4 74062674 74062802 -128265545 - MIR3 SINE MIR -34 174 43 28 0 0 0 chr4 74063456 74063484 -128264863 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 74063685 74063707 -128264640 + AT_rich Low_complexity Low_complexity 1 22 0 213 279 0 0 chr4 74064207 74064275 -128264072 + T-rich Low_complexity Low_complexity 5 72 0 349 339 77 54 chr4 74064728 74064988 -128263359 + L1MC1 LINE L1 5329 5594 -527 2221 106 7 0 chr4 74065347 74065648 -128262699 - AluSx SINE Alu -9 303 1 24 0 0 0 chr4 74065838 74065862 -128262485 + AT_rich Low_complexity Low_complexity 1 24 0 34 24 0 0 chr4 74067443 74067484 -128260863 + AT_rich Low_complexity Low_complexity 1 41 0 21 57 0 0 chr4 74067632 74067667 -128260680 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 74068352 74068373 -128259974 + AT_rich Low_complexity Low_complexity 1 21 0 358 319 92 16 chr4 74069280 74069465 -128258882 - MIR SINE MIR -58 204 6 302 98 0 16 chr4 74070566 74070627 -128257720 + (CA)n Simple_repeat Simple_repeat 2 61 0 270 276 135 13 chr4 74071119 74071275 -128257072 - MIR SINE MIR 0 262 88 4266 167 32 93 chr4 74071322 74071679 -128256668 + L1MA9 LINE L1 4782 5159 -1153 1934 37 8 0 chr4 74071679 74071918 -128256429 + L1PA4 LINE L1 5911 6154 -1 4266 167 32 93 chr4 74071918 74072190 -128256157 + L1MA9 LINE L1 5159 5446 -866 2376 87 0 3 chr4 74072190 74072500 -128255847 + AluSc SINE Alu 1 309 0 4266 167 32 93 chr4 74072500 74072959 -128255388 + L1MA9 LINE L1 5446 5773 -539 333 0 0 0 chr4 74072959 74072996 -128255351 + (CA)n Simple_repeat Simple_repeat 2 38 0 4266 167 32 93 chr4 74072996 74073469 -128254878 + L1MA9 LINE L1 5773 6274 -38 267 284 113 21 chr4 74074087 74074228 -128254119 - MIR SINE MIR -5 257 104 195 268 24 0 chr4 74074280 74074321 -128254026 + MIR SINE MIR 58 99 -109 462 261 136 11 chr4 74074349 74074533 -128253814 - MIR SINE MIR -13 249 43 273 310 96 92 chr4 74074908 74075147 -128253200 + L2 LINE L2 3032 3271 -1 25 0 0 0 chr4 74076771 74076796 -128251551 + AT_rich Low_complexity Low_complexity 1 25 0 3561 165 18 12 chr4 74077333 74077994 -128250353 + L1MC1 LINE L1 5652 6316 -17 901 10 0 0 chr4 74078172 74078275 -128250072 - L1PA2 LINE L1 -251 5904 5802 2046 4 0 0 chr4 74078275 74078508 -128249839 + L1PA2 LINE L1 5923 6155 0 209 360 34 57 chr4 74081863 74082038 -128246309 - L2 LINE L2 -5 3267 3097 643 219 88 15 chr4 74082088 74082225 -128246122 + FRAM SINE Alu 9 155 -21 180 152 0 0 chr4 74082376 74082409 -128245938 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 5552 156 25 3 chr4 74082852 74083911 -128244436 + L1 LINE L1 4248 5330 -816 693 230 40 0 chr4 74083921 74084069 -128244278 + AluSg/x SINE Alu 146 299 -11 6392 84 41 13 chr4 74084069 74085013 -128243334 + L1MA1 LINE L1 5325 6295 -7 1201 150 11 114 chr4 74086408 74086543 -128241804 + AluJo SINE Alu 8 101 -211 2371 75 0 3 chr4 74086543 74086849 -128241498 + AluY SINE Alu 1 305 -6 1201 150 11 114 chr4 74086849 74086993 -128241354 + AluJo SINE Alu 101 258 -54 225 0 0 0 chr4 74086997 74087022 -128241325 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr4 74087664 74087684 -128240663 + (TATATG)n Simple_repeat Simple_repeat 4 23 0 22 35 0 0 chr4 74088279 74088308 -128240039 + AT_rich Low_complexity Low_complexity 1 29 0 38 75 0 0 chr4 74089011 74089091 -128239256 + AT_rich Low_complexity Low_complexity 1 80 0 22 35 0 0 chr4 74089168 74089197 -128239150 + AT_rich Low_complexity Low_complexity 1 29 0 30 27 0 0 chr4 74089288 74089325 -128239022 + AT_rich Low_complexity Low_complexity 1 37 0 24 67 0 0 chr4 74090736 74090781 -128237566 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr4 74091533 74091561 -128236786 + AT_rich Low_complexity Low_complexity 1 28 0 283 324 66 7 chr4 74091753 74091889 -128236458 - MIR SINE MIR -109 153 10 399 250 78 31 chr4 74091976 74092104 -128236243 - MIR SINE MIR -24 238 105 231 185 0 31 chr4 74092149 74092214 -128236133 + T-rich Low_complexity Low_complexity 2 64 0 351 44 0 0 chr4 74093021 74093066 -128235281 + (TG)n Simple_repeat Simple_repeat 2 46 0 333 213 11 43 chr4 74093581 74093675 -128234672 - MIR SINE MIR -5 257 167 1986 151 0 6 chr4 74095250 74095562 -128232785 + AluSg SINE Alu 1 310 0 211 176 0 0 chr4 74095710 74095744 -128232603 + (CTG)n Simple_repeat Simple_repeat 2 35 0 910 306 28 4 chr4 74095753 74096008 -128232339 - MIR SINE MIR 0 262 2 252 260 68 0 chr4 74096758 74096831 -128231516 + L2 LINE L2 3232 3309 -4 253 306 32 0 chr4 74097077 74097139 -128231208 - MIR SINE MIR -151 111 48 205 88 29 0 chr4 74097283 74097317 -128231030 + (TA)n Simple_repeat Simple_repeat 2 36 0 2209 117 3 0 chr4 74097398 74097707 -128230640 + AluSq SINE Alu 1 310 -3 25 0 0 0 chr4 74097794 74097819 -128230528 + AT_rich Low_complexity Low_complexity 1 25 0 888 183 30 6 chr4 74099315 74099479 -128228868 + L1M1 LINE L1 478 645 -6920 217 243 100 43 chr4 74101605 74101675 -128226672 - MIR SINE MIR -95 113 40 2289 104 0 0 chr4 74101813 74102112 -128226235 - AluSc SINE Alu -10 299 1 261 0 0 0 chr4 74102554 74102583 -128225764 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2061 119 3 26 chr4 74102590 74102900 -128225447 + AluSg SINE Alu 1 303 -7 1753 150 65 141 chr4 74103527 74104079 -128224268 + MER67D LTR ERV1 1 510 -4 629 309 28 39 chr4 74104291 74104573 -128223774 + L1MEd LINE L1 84 362 -5757 599 249 72 26 chr4 74105028 74105221 -128223126 - MIR SINE MIR 0 262 61 579 164 9 0 chr4 74105796 74105906 -128222441 + L1PA16 LINE L1 6056 6166 0 343 261 81 31 chr4 74105912 74106073 -128222274 - L1ME3A LINE L1 -43 6127 5959 306 319 58 49 chr4 74106073 74106299 -128222048 + L2 LINE L2 2258 2485 -829 186 238 127 32 chr4 74106425 74106488 -128221859 - L3b LINE CR1 -226 1357 1289 1263 272 99 26 chr4 74106503 74106959 -128221388 - L2 LINE L2 -415 2899 2411 845 204 44 14 chr4 74106966 74107253 -128221094 - MLT1A2 LTR MaLR -4 370 2 3487 283 130 82 chr4 74107254 74107879 -128220468 - L2 LINE L2 -894 2420 1827 688 67 0 0 chr4 74107879 74107969 -128220378 - L1P LINE L1 -1931 4215 4126 9715 30 1 0 chr4 74107972 74109902 -128218445 + L1PA4 LINE L1 4221 6152 -3 3487 283 130 82 chr4 74109902 74110389 -128217958 - L2 LINE L2 -1488 1826 1364 2015 102 14 24 chr4 74110389 74110683 -128217664 + AluSx SINE Alu 4 294 -18 3487 283 130 82 chr4 74110683 74111762 -128216585 - L2 LINE L2 -1950 1364 25 210 337 10 41 chr4 74112194 74112292 -128216055 + L2 LINE L2 3219 3313 0 196 299 187 28 chr4 74112322 74112429 -128215918 + L2 LINE L2 3182 3305 -8 21 0 0 0 chr4 74113811 74113832 -128214515 + AT_rich Low_complexity Low_complexity 1 21 0 1090 109 17 0 chr4 74114793 74114968 -128213379 + L1M1 LINE L1 5261 5438 -866 7807 168 51 4 chr4 74116454 74117767 -128210580 + L1MA2 LINE L1 993 2367 -5198 7874 156 18 8 chr4 74117767 74118873 -128209474 + L1MA2 LINE L1 5258 6351 -1372 2052 112 3 33 chr4 74118873 74119176 -128209171 + AluSc SINE Alu 1 294 -15 7874 156 18 8 chr4 74119176 74120023 -128208324 + L1MA2 LINE L1 6351 7243 -480 2045 122 32 35 chr4 74120023 74120399 -128207948 - THE1C LTR MaLR 0 375 1 7874 156 18 8 chr4 74120399 74120840 -128207507 + L1MA2 LINE L1 7243 7678 -45 695 93 74 0 chr4 74120840 74120947 -128207400 + L1PA10 LINE L1 6049 6164 -4 457 264 235 20 chr4 74122355 74122810 -128205537 - L1M4 LINE L1 -1122 5228 4676 1452 230 176 37 chr4 74122811 74123227 -128205120 + MLT1E2 LTR MaLR 1 512 -114 5271 15 2 10 chr4 74123227 74123844 -128204503 + L1PA2 LINE L1 5544 6155 0 1452 230 176 37 chr4 74123844 74123974 -128204373 + MLT1E2 LTR MaLR 512 623 -3 403 265 162 10 chr4 74123981 74124290 -128204057 - L1M4 LINE L1 -1677 4673 4318 803 238 120 26 chr4 74124366 74124782 -128203565 + MLT1E2-int LTR MaLR 34 606 -765 212 0 0 35 chr4 74124944 74124973 -128203374 + (TA)n Simple_repeat Simple_repeat 2 29 0 351 301 97 0 chr4 74125964 74126057 -128202290 + L2 LINE L2 3171 3272 0 28 48 0 0 chr4 74126090 74126132 -128202215 + AT_rich Low_complexity Low_complexity 1 42 0 368 306 64 23 chr4 74126206 74126379 -128201968 - MIR SINE MIR -63 199 20 428 328 53 42 chr4 74127047 74127309 -128201038 - L2 LINE L2 -691 2623 2359 1892 147 17 0 chr4 74127755 74128054 -128200293 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr4 74128451 74128472 -128199875 + AT_rich Low_complexity Low_complexity 1 21 0 3178 195 57 16 chr4 74128668 74129535 -128198812 - L1M4 LINE L1 -2702 3648 2747 3490 270 43 37 chr4 74129539 74131099 -128197248 - L1M4 LINE L1 -4174 2177 882 2066 105 21 0 chr4 74131099 74131385 -128196962 + AluSx SINE Alu 21 312 0 3490 270 43 37 chr4 74131385 74131701 -128196646 - L1M4 LINE L1 -5469 882 569 303 296 23 11 chr4 74131789 74131877 -128196470 - L1M4 LINE L1 -5545 736 648 1779 251 170 36 chr4 74131943 74132520 -128195827 - L1M4 LINE L1 -5617 664 11 191 114 0 57 chr4 74145055 74145090 -128183257 + L3b LINE CR1 1288 1320 -263 37838 27 23 1 chr4 74147336 74152737 -128175610 + L1HS LINE L1 634 6155 0 354 121 0 0 chr4 74152738 74152804 -128175543 + (A)n Simple_repeat Simple_repeat 1 66 0 236 188 0 14 chr4 74155986 74156055 -128172292 + L1P LINE L1 4981 5048 -1098 23 68 0 0 chr4 74156165 74156209 -128172138 + AT_rich Low_complexity Low_complexity 1 44 0 661 244 90 21 chr4 74156599 74156833 -128171514 - MIR SINE MIR -8 254 5 320 300 118 57 chr4 74157386 74157683 -128170664 - L2 LINE L2 -1 3312 2998 258 290 113 24 chr4 74158452 74158576 -128169771 - MIR SINE MIR -120 142 8 266 296 23 0 chr4 74158903 74158991 -128169356 + MLT1K LTR MaLR 328 417 -171 544 202 0 18 chr4 74159173 74159287 -128169060 - AluJo SINE Alu -178 134 23 424 326 87 26 chr4 74159938 74160202 -128168145 + L2 LINE L2 2319 2598 -716 242 385 36 54 chr4 74160216 74160494 -128167853 + L2 LINE L2 2699 2971 -343 1642 217 43 32 chr4 74160652 74161113 -128167234 - MLT1C LTR MaLR 0 467 2 393 250 29 0 chr4 74161157 74161261 -128167086 + MER94 DNA DNA 1 107 -27 294 263 53 26 chr4 74161301 74161377 -128166970 + L2 LINE L2 3236 3313 0 1865 153 82 7 chr4 74161682 74162058 -128166289 - MLT2C2 LTR ERVL -2 395 1 23 33 0 0 chr4 74162759 74162789 -128165558 + AT_rich Low_complexity Low_complexity 1 30 0 998 392 0 64 chr4 74163619 74163902 -128164445 - AluJb SINE Alu -2 310 46 737 182 0 0 chr4 74163902 74164023 -128164324 - AluJb SINE Alu -176 136 16 23 0 0 0 chr4 74164528 74164551 -128163796 + AT_rich Low_complexity Low_complexity 1 23 0 222 231 0 29 chr4 74166005 74166109 -128162238 + (TTA)n Simple_repeat Simple_repeat 1 101 0 250 367 9 0 chr4 74167453 74167562 -128160785 + MARNA DNA Mariner 135 244 -342 304 185 46 0 chr4 74167946 74168011 -128160336 + MER3 DNA MER1_type 141 208 -1 303 369 60 12 chr4 74168127 74168295 -128160052 + MER5A DNA MER1_type 7 182 -7 2568 33 0 3 chr4 74168635 74168942 -128159405 - AluY SINE Alu -5 306 1 22 70 0 0 chr4 74169036 74169079 -128159268 + AT_rich Low_complexity Low_complexity 1 43 0 29 28 0 0 chr4 74169176 74169212 -128159135 + AT_rich Low_complexity Low_complexity 1 36 0 2119 136 3 0 chr4 74169230 74169539 -128158808 + AluSx SINE Alu 1 310 -2 24 32 0 0 chr4 74169802 74169833 -128158514 + AT_rich Low_complexity Low_complexity 1 31 0 363 226 110 34 chr4 74172950 74173096 -128155251 - MER103 DNA DNA -2 164 8 2130 118 3 0 chr4 74174619 74174915 -128153432 - AluY SINE Alu -14 297 1 436 333 29 6 chr4 74174921 74175092 -128153255 - MIR SINE MIR -70 192 18 220 359 86 29 chr4 74176519 74176728 -128151619 + L2 LINE L2 2463 2683 -631 894 208 135 0 chr4 74176830 74177022 -128151325 + MER20 DNA MER1_type 2 219 0 3338 53 0 0 chr4 74177149 74177564 -128150783 + L1PA6 LINE L1 5740 6154 0 851 256 102 55 chr4 74177665 74178009 -128150338 + MLT1H LTR MaLR 190 549 0 392 368 14 18 chr4 74178026 74178249 -128150098 - HERV16 LTR ERVL -4432 564 343 282 401 11 11 chr4 74178359 74178536 -128149811 + MER5A DNA MER1_type 2 178 -11 728 272 27 31 chr4 74178584 74178808 -128149539 + MER69 DNA AcHobo 25 247 -2279 348 195 35 23 chr4 74178853 74178940 -128149407 + MER69 DNA AcHobo 2434 2521 -5 253 286 34 37 chr4 74178948 74179061 -128149286 - MIR SINE MIR -33 175 63 423 152 9 29 chr4 74181073 74181178 -128147169 + GA-rich Low_complexity Low_complexity 4 106 0 23 33 0 0 chr4 74181198 74181228 -128147119 + AT_rich Low_complexity Low_complexity 1 30 0 209 319 14 0 chr4 74181228 74181297 -128147050 - MIR SINE MIR -121 141 72 308 286 84 42 chr4 74183199 74183412 -128144935 + MARNA DNA Mariner 23 244 -342 311 157 14 43 chr4 74183797 74183867 -128144480 + MER3 DNA MER1_type 141 208 -1 249 279 0 25 chr4 74184885 74184964 -128143383 - MIR SINE MIR -18 244 168 301 346 101 18 chr4 74185504 74185721 -128142626 - L2 LINE L2 -1411 1903 1669 204 408 50 0 chr4 74185762 74185882 -128142465 - L2 LINE L2 -652 2662 2537 180 337 89 30 chr4 74186499 74186600 -128141747 + L2 LINE L2 2869 2975 -339 776 201 7 0 chr4 74186723 74186862 -128141485 - AluJo SINE Alu -172 140 1 306 299 26 26 chr4 74186914 74187031 -128141316 - MIR SINE MIR -38 224 108 1345 179 54 98 chr4 74187560 74188001 -128140346 - MLT1E1 LTR MaLR -6 648 227 301 175 18 18 chr4 74188002 74188059 -128140288 - MLT1E1 LTR MaLR -597 57 1 990 196 38 14 chr4 74189440 74189649 -128138698 - AluJo SINE Alu -12 300 87 1068 334 88 21 chr4 74189661 74190250 -128138097 - L2 LINE L2 -24 3289 2616 819 78 26 0 chr4 74190250 74190366 -128137981 + L1PA10 LINE L1 6047 6165 -3 1068 334 88 21 chr4 74190366 74190690 -128137657 - L2 LINE L2 -697 2616 2315 542 318 47 28 chr4 74190690 74190901 -128137446 - MLT1E2 LTR MaLR 0 626 412 617 299 88 51 chr4 74191066 74191441 -128136906 - L2 LINE L2 -2474 840 452 338 391 103 6 chr4 74191781 74192129 -128136218 - L2 LINE L2 -2860 454 73 273 287 89 0 chr4 74192238 74192339 -128136008 - L2 LINE L2 -5 3308 3199 25 0 0 0 chr4 74192624 74192649 -128135698 + AT_rich Low_complexity Low_complexity 1 25 0 591 232 7 28 chr4 74194099 74194241 -128134106 + MLT1J1 LTR MaLR 31 169 -277 6812 162 12 11 chr4 74194609 74196910 -128131437 - L1PB1 LINE L1 -10 6141 3846 20177 33 0 6 chr4 74196910 74200150 -128128197 + L1PA4 LINE L1 2918 6155 0 744 87 47 31 chr4 74200161 74200288 -128128059 + LTR7 LTR ERV1 322 450 0 1300 71 66 10 chr4 74200289 74200487 -128127860 - MER4-int LTR ERV1 -1784 4814 4606 1814 129 18 25 chr4 74200811 74201119 -128127228 + AluSx SINE Alu 1 306 0 207 339 0 0 chr4 74202825 74202881 -128125466 + L2 LINE L2 3200 3255 -17 417 153 10 20 chr4 74202882 74202980 -128125367 + GA-rich Low_complexity Low_complexity 2 98 0 301 434 0 0 chr4 74202989 74203162 -128125185 - MIR SINE MIR -89 173 1 23 0 0 0 chr4 74203578 74203601 -128124746 + AT_rich Low_complexity Low_complexity 1 23 0 270 316 103 44 chr4 74205298 74205434 -128122913 - L2 LINE L2 -1413 1901 1758 338 360 50 46 chr4 74205475 74205714 -128122633 - L2 LINE L2 -566 2748 2509 864 163 0 28 chr4 74206572 74206713 -128121634 - FLAM_C SINE Alu -6 137 1 372 315 62 17 chr4 74206755 74206933 -128121414 - MIR SINE MIR -27 235 50 1218 174 51 98 chr4 74207387 74207836 -128120511 - MLT1E1 LTR MaLR 0 654 227 305 140 18 18 chr4 74207837 74207894 -128120453 - MLT1E1 LTR MaLR -597 57 1 469 239 9 9 chr4 74208762 74208871 -128119476 + MLT1J1 LTR MaLR 31 139 -307 2925 75 12 2 chr4 74208901 74209301 -128119046 + MLT2A1 LTR ERVL 1 404 -40 317 322 0 0 chr4 74209301 74209391 -128118956 + L1MC4 LINE L1 6614 6703 -1339 313 85 0 0 chr4 74209397 74209444 -128118903 + MLT2A1 LTR ERVL 391 437 -7 241 286 14 0 chr4 74209647 74209717 -128118630 + (GAATG)n Simple_repeat Simple_repeat 3 73 0 22 0 0 0 chr4 74209817 74209839 -128118508 + AT_rich Low_complexity Low_complexity 1 22 0 348 324 144 18 chr4 74209843 74210176 -128118171 - L2 LINE L2 -2245 1069 695 5128 159 20 23 chr4 74210176 74211571 -128116776 + L1PA16 LINE L1 4785 6166 0 782 275 113 22 chr4 74212226 74212640 -128115707 - LTR50 LTR ERVL 0 795 344 800 318 47 6 chr4 74212681 74213328 -128115019 - ERVL LTR ERVL -517 5247 4479 425 372 35 0 chr4 74214100 74214299 -128114048 - MIR SINE MIR -56 206 1 308 264 115 19 chr4 74214306 74214514 -128113833 + MER112 DNA MER1_type 5 232 -28 453 321 21 21 chr4 74214652 74214839 -128113508 + MIR SINE MIR 74 260 -2 226 229 0 0 chr4 74215490 74215538 -128112809 - MER5B DNA MER1_type 0 178 131 1855 183 0 0 chr4 74215551 74215884 -128112463 + L1PA15 LINE L1 5833 6165 0 27 0 0 0 chr4 74215889 74215916 -128112431 + AT_rich Low_complexity Low_complexity 1 27 0 515 256 24 0 chr4 74215924 74216049 -128112298 - MER5B DNA MER1_type -50 128 1 817 180 0 29 chr4 74217001 74217140 -128111207 - FLAM_C SINE Alu -8 135 1 307 299 26 26 chr4 74217192 74217309 -128111038 - MIR SINE MIR -38 224 108 354 227 207 0 chr4 74217872 74218022 -128110325 - MER67D LTR ERV1 -14 500 320 1561 152 12 67 chr4 74218085 74218414 -128109933 - MER67D LTR ERV1 -203 311 1 8799 27 0 0 chr4 74219163 74220248 -128108099 - L1P LINE L1 -1055 5091 4007 34 24 0 0 chr4 74221712 74221753 -128106594 + AT_rich Low_complexity Low_complexity 1 41 0 1836 184 0 0 chr4 74221758 74222090 -128106257 - L1PA15 LINE L1 -1 6164 5833 226 229 0 0 chr4 74222103 74222151 -128106196 + MER5B DNA MER1_type 131 178 0 5203 144 30 25 chr4 74222970 74223966 -128104381 + Tigger1 DNA MER2_type 475 1475 -943 1975 107 0 57 chr4 74223966 74224311 -128104036 + AluSx SINE Alu 1 328 0 235 346 39 24 chr4 74224721 74224848 -128103499 - MIR SINE MIR -86 176 48 1212 203 45 14 chr4 74224859 74225047 -128103300 + MER69 DNA AcHobo 2102 2283 -243 1679 182 21 0 chr4 74225047 74225338 -128103009 + AluJb SINE Alu 1 297 -15 1212 203 45 14 chr4 74225338 74225503 -128102844 + MER69 DNA AcHobo 2283 2466 -60 2460 88 0 0 chr4 74226296 74226603 -128101744 - AluSg1 SINE Alu -2 307 1 401 221 147 61 chr4 74227037 74227268 -128101079 + MER20B DNA MER1_type 515 765 -18 287 350 93 7 chr4 74227494 74227634 -128100713 + L2 LINE L2 3161 3312 -1 343 350 100 7 chr4 74227706 74227846 -128100501 + L2 LINE L2 3119 3271 -1 427 103 0 0 chr4 74228294 74228362 -128099985 - MER41B LTR ERV1 -88 547 480 339 273 234 5 chr4 74228371 74228576 -128099771 - L1ME4a LINE L1 -9 6112 5861 377 169 14 0 chr4 74228602 74228671 -128099676 - Charlie1b DNA MER1_type -4 519 450 1412 196 16 35 chr4 74228671 74228985 -128099362 + LTR22 LTR ERVK 1 308 -272 318 61 20 0 chr4 74228985 74229034 -128099313 + Alu SINE Alu 1 50 -250 1487 167 23 0 chr4 74229034 74229298 -128099049 + LTR22 LTR ERVK 311 580 0 2167 76 43 23 chr4 74229350 74229654 -128098693 - AluSx SINE Alu -2 310 1 1066 169 29 46 chr4 74229658 74229965 -128098382 - Charlie1b DNA MER1_type -131 392 91 729 193 69 0 chr4 74229965 74230110 -128098237 - Tigger2 DNA MER2_type 0 2718 2564 693 147 8 0 chr4 74230109 74230238 -128098109 - Tigger2 DNA MER2_type -2508 210 81 * 2796 98 12 12 chr4 74230239 74230656 -128097691 - L1PA14 LINE L1 -5 6156 5740 1632 101 0 0 chr4 74230756 74230965 -128097382 - AluSx SINE Alu -103 209 1 535 269 87 54 chr4 74233121 74233419 -128094928 + MER115 DNA AcHobo 209 516 -177 212 319 14 14 chr4 74234543 74234612 -128093735 + L2 LINE L2 3149 3217 -55 205 310 0 23 chr4 74234899 74234986 -128093361 + CT-rich Low_complexity Low_complexity 4 88 0 826 226 39 1 chr4 74235000 74235256 -128093091 - L1MA4 LINE L1 -11 6289 6030 209 291 0 38 chr4 74235267 74235346 -128093001 - L2 LINE L2 -33 3239 3164 22 56 0 0 chr4 74235507 74235543 -128092804 + AT_rich Low_complexity Low_complexity 1 36 0 25 51 0 0 chr4 74236126 74236165 -128092182 + AT_rich Low_complexity Low_complexity 1 39 0 621 289 158 27 chr4 74236237 74236838 -128091509 + L2 LINE L2 2628 3313 0 2110 110 4 4 chr4 74236978 74237306 -128091041 + AluSx SINE Alu 1 328 0 34351 95 16 9 chr4 74237882 74243987 -128084360 + L1PA5 LINE L1 11 6151 -3 236 269 0 115 chr4 74244322 74244426 -128083921 + L2 LINE L2 3214 3305 -8 530 316 92 19 chr4 74245418 74245788 -128082559 + L1 LINE L1 2787 3183 -2963 6007 109 33 8 chr4 74245973 74247368 -128080979 - L1PA14 LINE L1 -2 6159 4730 2041 189 55 32 chr4 74247368 74247843 -128080504 - MER66B LTR ERV1 0 486 1 6007 109 33 8 chr4 74247843 74248051 -128080296 - L1PA14 LINE L1 -1431 4730 4529 708 107 0 0 chr4 74248276 74248379 -128079968 - MSTA LTR MaLR -325 103 1 2021 150 132 5 chr4 74249052 74249432 -128078915 - MSTA LTR MaLR 0 428 1 3543 125 0 4 chr4 74250252 74250765 -128077582 - MER9 LTR ERVK 0 511 1 38000 41 1 0 chr4 74251676 74257827 -128070520 + L1PA4 LINE L1 1 6155 0 1599 88 9 0 chr4 74259326 74259552 -128068795 - L1PA10 LINE L1 -2 6166 5939 291 353 0 42 chr4 74259673 74259792 -128068555 + MIR SINE MIR 21 134 -128 2014 94 0 0 chr4 74259924 74260178 -128068169 + AluSg SINE Alu 44 297 -13 9382 135 52 27 chr4 74260215 74260696 -128067651 + Tigger1 DNA MER2_type 1 469 -1949 2300 89 0 0 chr4 74260696 74260989 -128067358 + AluSg SINE Alu 1 293 -17 9382 135 52 27 chr4 74260989 74261981 -128066366 + Tigger1 DNA MER2_type 469 1521 -897 2433 59 0 50 chr4 74261981 74262303 -128066044 + AluY SINE Alu 1 306 -5 9382 135 52 27 chr4 74262303 74262479 -128065868 + Tigger1 DNA MER2_type 1521 1691 -727 360 200 0 0 chr4 74262479 74262554 -128065793 + (TA)n Simple_repeat Simple_repeat 2 76 0 257 196 0 0 chr4 74262554 74262610 -128065737 - L1MC4 LINE L1 -1339 6703 6648 239 284 0 0 chr4 74262634 74262722 -128065625 - L1MC4 LINE L1 -1341 6701 6614 * 243 256 47 0 chr4 74262670 74262756 -128065591 + L1MC4 LINE L1 6614 6703 -1339 231 193 0 18 chr4 74262750 74262807 -128065540 - L1MCa LINE L1 -4365 2061 2006 * 317 322 0 0 chr4 74262832 74262922 -128065425 + L1MC4 LINE L1 6614 6703 -1339 * 355 289 0 0 chr4 74262842 74262932 -128065415 - L1MC4 LINE L1 -1339 6703 6614 22 0 0 0 chr4 74263337 74263359 -128064988 + AT_rich Low_complexity Low_complexity 1 22 0 862 181 5 58 chr4 74263880 74264030 -128064317 - AluJo SINE Alu -30 282 142 2327 51 0 45 chr4 74264030 74264343 -128064004 - AluY SINE Alu -12 299 1 862 181 5 58 chr4 74264343 74264380 -128063967 - AluJo SINE Alu -170 142 105 891 216 0 0 chr4 74264439 74264629 -128063718 - L1P LINE L1 -1172 4974 4785 377 123 0 0 chr4 74265050 74265107 -128063240 - Tigger3(Golem) DNA MER2_type -270 2759 2703 370 107 0 0 chr4 74265358 74265414 -128062933 + Tigger3(Golem) DNA MER2_type 2703 2758 -271 229 307 40 30 chr4 74265452 74265553 -128062794 - LTR33 LTR ERVL -380 141 40 421 285 80 48 chr4 74267300 74267549 -128060798 + MIR SINE MIR 3 259 -3 189 276 213 50 chr4 74267859 74268319 -128060028 + L2 LINE L2 1043 1577 -1737 288 242 42 63 chr4 74268992 74269053 -128059294 + L2 LINE L2 3180 3240 -32 1641 189 0 14 chr4 74269053 74269349 -128058998 - AluJo SINE Alu -20 292 1 288 242 42 63 chr4 74269349 74269382 -128058965 + L2 LINE L2 3240 3272 0 278 343 70 14 chr4 74270004 74270147 -128058200 + MIR SINE MIR 112 262 0 21 0 0 0 chr4 74270260 74270281 -128058066 + AT_rich Low_complexity Low_complexity 1 21 0 231 196 0 18 chr4 74270281 74270337 -128058010 - L1PB4 LINE L1 -4 6152 6098 1170 272 345 29 chr4 74270343 74271383 -128056964 - L2 LINE L2 -484 2830 1462 430 325 58 5 chr4 74271381 74271572 -128056775 + MIR SINE MIR 52 252 -10 * 860 195 115 5 chr4 74271697 74271897 -128056450 + MER58A DNA MER1_type 3 224 0 1120 254 162 30 chr4 74272148 74272644 -128055703 + L2 LINE L2 2750 3309 -4 422 260 77 77 chr4 74272823 74273004 -128055343 + MER5A DNA MER1_type 9 189 0 213 214 29 14 chr4 74273108 74273178 -128055169 + T-rich Low_complexity Low_complexity 1 71 0 292 328 42 26 chr4 74273273 74273465 -128054882 - MER117 DNA MER1_type -1 196 2 243 346 88 15 chr4 74274507 74274643 -128053704 - MER5A DNA MER1_type -7 182 37 837 283 85 53 chr4 74277004 74277382 -128050965 + L2 LINE L2 2924 3313 0 184 297 0 47 chr4 74277572 74277636 -128050711 + L2 LINE L2 3251 3311 -2 243 146 0 0 chr4 74278169 74278210 -128050137 + (TA)n Simple_repeat Simple_repeat 1 41 0 246 180 49 16 chr4 74279314 74279375 -128048972 - L2 LINE L2 0 3272 3210 189 0 0 0 chr4 74279540 74279561 -128048786 + (A)n Simple_repeat Simple_repeat 1 21 0 413 254 87 0 chr4 74279832 74279970 -128048377 - MER103 DNA DNA -6 160 11 22 35 0 0 chr4 74280108 74280137 -128048210 + AT_rich Low_complexity Low_complexity 1 29 0 2136 132 0 3 chr4 74280137 74280441 -128047906 - AluSx SINE Alu -9 303 1 807 186 20 13 chr4 74280445 74280624 -128047723 - L1P5 LINE L1 -520 5634 5460 1895 146 3 32 chr4 74280624 74280939 -128047408 + AluJo SINE Alu 1 306 -6 1572 198 28 90 chr4 74281065 74281530 -128046817 - MER67D LTR ERV1 -78 436 1 328 226 5 0 chr4 74281835 74281900 -128046447 - AluS SINE Alu -237 62 5 37 69 0 0 chr4 74282086 74282158 -128046189 + AT_rich Low_complexity Low_complexity 1 72 0 442 92 0 0 chr4 74282256 74282321 -128046026 - AluSc SINE Alu -9 300 236 273 326 93 0 chr4 74282606 74282735 -128045612 - L1MC4 LINE L1 -370 7672 7532 453 319 41 30 chr4 74282900 74283069 -128045278 + MIR SINE MIR 26 196 -66 32 0 0 0 chr4 74283548 74283580 -128044767 + AT_rich Low_complexity Low_complexity 1 32 0 32467 103 8 56 chr4 74283584 74290016 -128038331 - L1PA7 LINE L1 -29 6125 13 518 244 25 8 chr4 74290090 74290209 -128038138 - MLT1A1 LTR MaLR -74 291 171 294 95 0 0 chr4 74290963 74291005 -128037342 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 1524 184 32 4 chr4 74291005 74291282 -128037065 - AluJo SINE Alu -26 286 2 195 42 0 0 chr4 74291723 74291747 -128036600 + (TC)n Simple_repeat Simple_repeat 1 24 0 1501 203 7 7 chr4 74291747 74292042 -128036305 - AluJo SINE Alu -17 295 1 1760 266 22 31 chr4 74292695 74293247 -128035100 + L1M2 LINE L1 10 556 -6293 925 215 35 12 chr4 74293479 74293691 -128034656 + MER20 DNA MER1_type 1 214 -5 1738 281 124 64 chr4 74293753 74294092 -128034255 - L2 LINE L2 -768 2546 2229 2432 80 0 3 chr4 74294092 74294394 -128033953 + AluSx SINE Alu 1 301 -11 1738 281 124 64 chr4 74294394 74295200 -128033147 - L2 LINE L2 -1085 2229 1332 426 280 110 115 chr4 74295460 74296271 -128032076 + L2 LINE L2 1358 2164 -1150 276 246 14 14 chr4 74296303 74296372 -128031975 + L2 LINE L2 3245 3313 0 595 198 0 9 chr4 74297167 74297278 -128031069 - Tigger7 DNA MER2_type 0 2491 2382 1298 211 4 0 chr4 74297291 74297519 -128030828 - Tigger7 DNA MER2_type -475 230 2 1291 195 50 27 chr4 74297784 74298045 -128030302 + AluJo SINE Alu 1 267 -45 2207 220 117 18 chr4 74298072 74298732 -128029615 - MER50 LTR ERV1 0 734 10 1646 156 33 30 chr4 74299749 74300051 -128028296 + AluJb SINE Alu 1 303 -9 225 338 32 45 chr4 74300621 74300778 -128027569 - L2 LINE L2 -186 3086 2932 441 0 0 0 chr4 74302086 74302135 -128026212 + (TA)n Simple_repeat Simple_repeat 2 50 0 284 313 96 17 chr4 74302238 74302353 -128025994 + L2 LINE L2 3184 3307 -6 333 343 170 18 chr4 74303634 74303917 -128024430 + L1MC4a LINE L1 5595 5920 -1888 433 291 8 8 chr4 74305263 74305380 -128022967 - L2 LINE L2 0 3313 3197 34 24 0 0 chr4 74305392 74305433 -128022914 + AT_rich Low_complexity Low_complexity 1 41 0 23 86 0 0 chr4 74305448 74305506 -128022841 + AT_rich Low_complexity Low_complexity 1 58 0 288 0 0 0 chr4 74305619 74305651 -128022696 + (TG)n Simple_repeat Simple_repeat 2 33 0 969 265 63 79 chr4 74306248 74306801 -128021546 - L2 LINE L2 -1 3312 2772 2149 138 6 3 chr4 74306801 74307112 -128021235 + AluSx SINE Alu 1 312 0 969 265 63 79 chr4 74307112 74307231 -128021116 - L2 LINE L2 -541 2772 2653 193 98 49 0 chr4 74307251 74307292 -128021055 + (TA)n Simple_repeat Simple_repeat 1 43 0 192 241 17 17 chr4 74307292 74307350 -128020997 - MIR3 SINE MIR -13 195 138 225 0 0 0 chr4 74307350 74307375 -128020972 + (T)n Simple_repeat Simple_repeat 1 25 0 1407 167 0 18 chr4 74307394 74307622 -128020725 - AluSx SINE Alu -88 224 1 1049 122 0 27 chr4 74307877 74308024 -128020323 - AluSq/x SINE Alu -169 143 1 309 239 140 18 chr4 74308223 74308328 -128020019 + MIR SINE MIR 50 161 -47 557 219 33 0 chr4 74309620 74309771 -128018576 - MER69 DNA AcHobo -22 2504 2349 440 194 10 10 chr4 74309776 74309874 -128018473 - MER69 DNA AcHobo -1128 98 1 1851 155 7 16 chr4 74311715 74312024 -128016323 + AluJb SINE Alu 1 306 -6 775 247 106 40 chr4 74312151 74312621 -128015726 - L1ME4a LINE L1 -5 6116 5616 875 234 44 13 chr4 74313243 74313469 -128014878 + MIR SINE MIR 28 260 -2 2108 121 0 3 chr4 74314594 74314883 -128013464 + AluSg SINE Alu 1 288 -22 299 318 97 20 chr4 74316164 74316359 -128011988 - MIR SINE MIR -4 258 49 198 0 0 0 chr4 74316447 74316469 -128011878 + (CA)n Simple_repeat Simple_repeat 1 22 0 354 282 27 18 chr4 74316673 74316783 -128011564 + MER5A DNA MER1_type 1 111 -78 2110 129 3 0 chr4 74317738 74318033 -128010314 - AluSx SINE Alu -16 296 1 942 145 0 0 chr4 74318039 74318177 -128010170 - AluJo SINE Alu -174 138 1 1189 224 37 4 chr4 74319805 74320046 -128008301 + AluJo SINE Alu 39 287 -25 202 286 0 0 chr4 74320059 74320115 -128008232 + MIR SINE MIR 98 153 -109 1816 170 0 23 chr4 74320127 74320427 -128007920 + AluJb SINE Alu 4 296 -16 594 197 166 10 chr4 74320662 74320855 -128007492 + Charlie2 DNA MER1_type 6 228 -2554 225 122 0 0 chr4 74320855 74320896 -128007451 - HSMAR2 DNA Mariner -1 1301 1261 824 125 125 0 chr4 74320905 74321033 -128007314 + AluSg SINE Alu 1 144 -166 1594 110 118 4 chr4 74321033 74321312 -128007035 + AluSg SINE Alu 17 322 0 7286 108 27 46 chr4 74321352 74321395 -128006952 - HSMAR2 DNA Mariner -51 1251 1209 1472 141 23 11 chr4 74321395 74321658 -128006689 + L1MA5A LINE L1 6032 6297 0 7286 108 27 46 chr4 74321658 74321694 -128006653 - HSMAR2 DNA Mariner -93 1209 1174 2164 125 7 0 chr4 74321694 74321989 -128006358 + AluSx SINE Alu 4 300 -12 7286 108 27 46 chr4 74321989 74322558 -128005789 - HSMAR2 DNA Mariner -128 1174 595 7373 40 4 2 chr4 74322558 74323601 -128004746 + L1PA5 LINE L1 5110 6154 0 7286 108 27 46 chr4 74323601 74324225 -128004122 - HSMAR2 DNA Mariner -707 595 2 248 333 20 0 chr4 74324225 74324323 -128004024 + Charlie2 DNA MER1_type 225 324 -2458 320 241 28 28 chr4 74324342 74324450 -128003897 + Charlie2 DNA MER1_type 1894 2001 -861 * 666 219 57 94 chr4 74324447 74324853 -128003494 - Charlie1b DNA MER1_type -126 397 7 2255 255 60 36 chr4 74324935 74325731 -128002616 - MER69 DNA AcHobo -411 815 1 466 168 11 0 chr4 74326023 74326118 -128002229 - Charlie5 DNA MER1_type 0 2623 2528 1325 128 0 11 chr4 74326118 74326298 -128002049 - AluSg/x SINE Alu -18 292 115 457 325 134 21 chr4 74327245 74327336 -128001011 - L1M4 LINE L1 -3373 2773 2694 3278 47 0 0 chr4 74327336 74327739 -128000608 - L1PA3 LINE L1 -3 6152 5750 457 325 134 21 chr4 74327739 74328117 -128000230 - L1M4 LINE L1 -3452 2694 2251 414 275 103 58 chr4 74328591 74329449 -127998898 - L1M4 LINE L1 -2145 4001 3106 1474 187 32 28 chr4 74329482 74329765 -127998582 - AluJo SINE Alu -28 284 1 473 250 97 81 chr4 74329774 74330180 -127998167 - HAL1 LINE L1 -30 2477 2060 1679 148 66 44 chr4 74330180 74330545 -127997802 + THE1C LTR MaLR 1 373 -2 473 250 97 81 chr4 74330545 74330622 -127997725 - HAL1 LINE L1 -447 2060 1986 1512 136 0 4 chr4 74330711 74330961 -127997386 + THE1C-int LTR MaLR 1 249 -1402 21 0 0 0 chr4 74331272 74331293 -127997054 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 74331879 74331901 -127996446 + AT_rich Low_complexity Low_complexity 1 22 0 194 226 48 0 chr4 74331912 74331974 -127996373 + MIR SINE MIR 100 164 -98 237 155 99 0 chr4 74331987 74332058 -127996289 - MER69 DNA AcHobo -15 2511 2434 226 246 18 0 chr4 74332042 74332099 -127996248 - MER69 DNA AcHobo -1087 139 82 * 8786 181 9 19 chr4 74332178 74333845 -127994502 + L1M1 LINE L1 15 1665 -5900 5554 158 10 18 chr4 74333844 74335385 -127992962 + L1M1 LINE L1 2758 4289 -3276 * 10007 188 25 10 chr4 74335390 74337367 -127990980 + L1MA2 LINE L1 17 2027 -5538 1989 164 39 25 chr4 74337367 74337726 -127990621 + THE1B LTR MaLR 1 364 0 10007 188 25 10 chr4 74337726 74337751 -127990596 + L1MA2 LINE L1 2027 2050 -5515 682 146 8 8 chr4 74337744 74337874 -127990473 + L1MA2 LINE L1 4996 5125 -2440 * 6113 137 20 2 chr4 74337870 74339279 -127989068 + L1MA2 LINE L1 6290 7723 0 575 333 53 0 chr4 74339567 74339791 -127988556 - MIR SINE MIR -6 256 17 1550 226 69 12 chr4 74340219 74340639 -127987708 + MLT1C LTR MaLR 1 444 -23 18257 162 19 5 chr4 74341310 74344127 -127984220 - L1P4 LINE L1 -419 7180 4405 2690 52 0 0 chr4 74344127 74344436 -127983911 - AluY SINE Alu -2 309 1 18257 162 19 5 chr4 74344436 74348420 -127979927 - L1P4 LINE L1 -3194 4405 1 461 174 0 0 chr4 74348425 74348511 -127979836 - Tigger2 DNA MER2_type -2631 87 2 382 261 23 0 chr4 74348512 74348600 -127979747 - Charlie1 DNA MER1_type -2669 92 3 22 80 0 0 chr4 74348920 74348970 -127979377 + AT_rich Low_complexity Low_complexity 1 50 0 1800 181 125 44 chr4 74349009 74349490 -127978857 + MLT2B1 LTR ERVL 1 520 0 2186 119 0 22 chr4 74349499 74349818 -127978529 + AluSx SINE Alu 1 312 0 192 40 0 0 chr4 74350063 74350088 -127978259 + (T)n Simple_repeat Simple_repeat 1 25 0 356 250 58 8 chr4 74350849 74350969 -127977378 - MER102a DNA MER1_type -10 320 195 262 247 26 0 chr4 74351019 74351096 -127977251 + MIR SINE MIR 184 262 0 488 306 78 31 chr4 74351890 74352130 -127976217 + MIR SINE MIR 3 250 -12 271 232 263 0 chr4 74352369 74352464 -127975883 - L2 LINE L2 -2 3270 3151 460 270 109 43 chr4 74352847 74353058 -127975289 + MIR SINE MIR 12 236 -26 210 71 0 0 chr4 74353384 74353412 -127974935 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 * 369 0 0 0 chr4 74353411 74353452 -127974895 + (TG)n Simple_repeat Simple_repeat 2 42 0 1926 123 0 0 chr4 74353456 74353716 -127974631 - AluSq SINE Alu -53 260 1 1775 185 0 13 chr4 74354274 74354577 -127973770 + AluSx SINE Alu 1 299 -13 6208 84 21 6 chr4 74354695 74356069 -127972278 + L1PA13 LINE L1 4393 5788 -375 1893 168 26 0 chr4 74356069 74356373 -127971974 + AluSx SINE Alu 1 312 0 6208 84 21 6 chr4 74356373 74356750 -127971597 + L1PA13 LINE L1 5788 6158 -5 926 177 44 25 chr4 74357094 74357356 -127970991 - MER33 DNA MER1_type -59 265 1 2466 203 97 7 chr4 74357431 74358737 -127969610 + L1MC2 LINE L1 4478 5907 -437 1405 156 80 34 chr4 74358743 74359006 -127969341 + AluJo SINE Alu 14 288 -24 229 135 0 0 chr4 74359006 74359043 -127969304 + Alu SINE Alu 83 119 -183 1934 142 28 86 chr4 74359043 74359508 -127968839 + L1MC2 LINE L1 5906 6343 -1 272 207 0 37 chr4 74360561 74360643 -127967704 + (TA)n Simple_repeat Simple_repeat 1 79 0 262 208 0 75 chr4 74360696 74360816 -127967531 - L1MEc LINE L1 -5275 1121 1011 2129 128 10 0 chr4 74360867 74361165 -127967182 + AluSx SINE Alu 1 301 -11 228 337 30 10 chr4 74361370 74361471 -127966876 - L1MEc LINE L1 -5493 712 610 1436 141 95 3 chr4 74362370 74362653 -127965694 - L1MA8 LINE L1 -6 6285 5977 2078 120 3 41 chr4 74362789 74363105 -127965242 + AluSx SINE Alu 1 304 -8 279 222 130 58 chr4 74363109 74363370 -127964977 - L1ME4a LINE L1 -86 6035 5756 14739 116 12 16 chr4 74363392 74363801 -127964546 + L1P3 LINE L1 1 410 -6051 207 0 0 0 chr4 74363801 74363824 -127964523 + (TTG)n Simple_repeat Simple_repeat 2 24 0 14739 116 12 16 chr4 74363824 74366945 -127961402 + L1P3 LINE L1 410 3536 -2925 4453 79 15 8 chr4 74366937 74367593 -127960754 + L1P3 LINE L1 4106 4766 -1695 * 813 173 46 6 chr4 74367593 74367766 -127960581 - LTR3b LTR ERVK 0 500 321 515 121 17 112 chr4 74367766 74367882 -127960465 - HERVK3 LTR ERVK -659 5286 3058 4459 213 37 2 chr4 74367911 74368867 -127959480 - HERVK3 LTR ERVK -4934 2309 1321 296 320 19 0 chr4 74368855 74368958 -127959389 - HERVK3 LTR ERVK -6563 680 576 * 520 198 87 97 chr4 74369010 74369217 -127959130 - HERVK3 LTR ERVK -6971 272 68 1683 151 71 12 chr4 74369493 74369817 -127958530 - LTR3b LTR ERVK 0 500 158 7135 46 6 0 chr4 74369827 74371530 -127956817 + L1PA7 LINE L1 4445 6154 0 2448 77 0 3 chr4 74372786 74373098 -127955249 + AluY SINE Alu 1 311 0 274 300 36 36 chr4 74373493 74373633 -127954714 + MIR SINE MIR 69 208 -54 468 82 0 0 chr4 74373754 74373815 -127954532 + Alu SINE Alu 233 293 -17 313 222 25 0 chr4 74374089 74374170 -127954177 - L1MD3 LINE L1 -10 7985 7903 187 241 111 0 chr4 74374171 74374225 -127954122 - L2 LINE L2 -61 3252 3193 347 253 147 32 chr4 74374652 74374747 -127953600 - L2 LINE L2 0 3272 3167 964 277 84 7 chr4 74375751 74376180 -127952167 + MER20B DNA MER1_type 29 490 -293 1568 145 4 0 chr4 74376232 74376460 -127951887 + AluSq SINE Alu 67 295 -18 229 295 0 74 chr4 74377560 74377655 -127950692 - MIR SINE MIR -17 245 158 203 287 181 21 chr4 74378002 74378096 -127950251 - L2 LINE L2 -6 3307 3199 1750 170 0 28 chr4 74378109 74378427 -127949920 + AluJb SINE Alu 1 309 -3 1448 178 20 41 chr4 74379183 74379476 -127948871 + AluJb SINE Alu 1 287 -25 355 116 0 29 chr4 74379483 74379552 -127948795 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 528 338 141 0 chr4 74379610 74379950 -127948397 - L2 LINE L2 -458 2856 2469 2352 108 0 6 chr4 74379953 74380267 -127948080 + AluSx SINE Alu 1 312 0 511 250 106 28 chr4 74380268 74380448 -127947899 - L2 LINE L2 -956 2358 2165 368 328 49 27 chr4 74380911 74381087 -127947260 + MIR SINE MIR 14 192 -64 1905 91 0 0 chr4 74381526 74381767 -127946580 + AluSg/x SINE Alu 66 306 -6 2053 127 7 3 chr4 74382084 74382384 -127945963 + AluSx SINE Alu 1 301 -11 482 286 38 0 chr4 74382646 74382779 -127945568 + MIR SINE MIR 97 234 -28 22 0 0 0 chr4 74382792 74382814 -127945533 + AT_rich Low_complexity Low_complexity 1 22 0 372 302 85 0 chr4 74383253 74383359 -127944988 - L2 LINE L2 0 3272 3158 431 280 64 0 chr4 74383428 74383553 -127944794 - MIR3 SINE MIR -48 160 28 441 276 141 0 chr4 74384038 74384194 -127944153 + MIR3 SINE MIR 28 205 -3 442 340 86 48 chr4 74384593 74385010 -127943337 + L3 LINE CR1 1101 1533 -44 189 330 43 17 chr4 74385640 74385755 -127942592 + L2 LINE L2 1848 1965 -1349 335 319 97 54 chr4 74386194 74386586 -127941761 + L1M2 LINE L1 717 1125 -5724 21 0 0 0 chr4 74387367 74387388 -127940959 + AT_rich Low_complexity Low_complexity 1 21 0 267 313 50 20 chr4 74388024 74388123 -127940224 + MIR SINE MIR 43 144 -64 504 346 34 15 chr4 74388277 74388546 -127939801 + LTR16B LTR ERVL 132 405 -59 1088 159 23 22 chr4 74389006 74389343 -127939004 + MLT2A2 LTR ERVL 214 451 -2 1506 274 45 34 chr4 74389732 74390089 -127938258 + L1MC4a LINE L1 5317 5686 -2122 222 37 0 0 chr4 74390089 74390116 -127938231 + (TA)n Simple_repeat Simple_repeat 2 28 0 1506 274 45 34 chr4 74390116 74390404 -127937943 + L1MC4a LINE L1 5686 5969 -1839 206 109 16 47 chr4 74390416 74390480 -127937867 + (TA)n Simple_repeat Simple_repeat 1 62 0 2050 223 36 47 chr4 74390480 74391032 -127937315 - MLT2B3 LTR ERVL -8 546 1 6635 151 24 58 chr4 74391032 74391352 -127936995 - ERVL-B3 LTR ERVL -7 5757 5427 273 119 0 0 chr4 74391352 74391394 -127936953 + (TA)n Simple_repeat Simple_repeat 2 43 0 6635 151 24 58 chr4 74391394 74392434 -127935913 - ERVL-B3 LTR ERVL -337 5427 4444 741 142 31 0 chr4 74392434 74392561 -127935786 + MER61D LTR ERV1 371 501 0 305 209 0 0 chr4 74392562 74392629 -127935718 - MLT2B3 LTR ERVL -487 67 1 1262 175 84 142 chr4 74392836 74393349 -127934998 - MLT1D LTR MaLR 0 505 23 447 294 49 0 chr4 74393474 74393617 -127934730 + L2 LINE L2 2876 3025 -288 421 237 69 8 chr4 74393651 74393782 -127934565 - MLT1J2 LTR MaLR -282 168 30 2085 70 0 0 chr4 74394275 74394546 -127933801 + L1PA7 LINE L1 5884 6154 0 223 304 0 38 chr4 74395019 74395098 -127933249 + L2 LINE L2 3237 3312 -1 233 340 64 49 chr4 74396012 74396215 -127932132 + LTR16A LTR ERVL 24 229 -221 2157 124 0 7 chr4 74396385 74396692 -127931655 + AluSg SINE Alu 1 305 -5 808 97 8 0 chr4 74396692 74396816 -127931531 - LTR26 LTR ERV1 -471 132 8 290 225 178 8 chr4 74396971 74397100 -127931247 - Charlie7 DNA MER1_type -2455 157 7 1511 196 0 67 chr4 74397878 74398190 -127930157 + AluJb SINE Alu 1 291 -21 27 0 0 0 chr4 74398190 74398217 -127930130 + AT_rich Low_complexity Low_complexity 1 27 0 2053 200 37 24 chr4 74399251 74399712 -127928635 - MLT1C LTR MaLR 0 467 1 234 323 121 8 chr4 74400133 74400257 -127928090 - L2 LINE L2 -955 2359 2222 180 0 0 0 chr4 74400422 74400442 -127927905 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 25 31 0 0 chr4 74400746 74400778 -127927569 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 74401169 74401190 -127927157 + AT_rich Low_complexity Low_complexity 1 21 0 302 315 138 30 chr4 74401400 74401474 -127926873 + L2 LINE L2 2827 2892 -380 2091 100 28 3 chr4 74401474 74401763 -127926584 - AluSc SINE Alu -13 296 1 302 315 138 30 chr4 74401763 74401891 -127926456 + L2 LINE L2 2892 3051 -221 369 347 13 20 chr4 74402172 74402322 -127926025 + L2 LINE L2 3123 3271 -1 381 162 0 0 chr4 74402323 74402391 -127925956 + (TGGA)n Simple_repeat Simple_repeat 2 69 0 2217 111 7 0 chr4 74402943 74403240 -127925107 + AluSx SINE Alu 1 299 -13 4224 151 25 27 chr4 74404193 74405675 -127922672 + L1PB1 LINE L1 4516 5985 -166 2071 166 35 31 chr4 74405675 74406224 -127922123 - MLT2A2 LTR ERVL 0 554 1 1132 119 6 0 chr4 74406224 74406392 -127921955 + L1PB1 LINE L1 5981 6149 -2 310 93 0 0 chr4 74406772 74406815 -127921532 + Alu SINE Alu 1 43 -258 354 339 170 18 chr4 74607700 74607983 -127720364 + L1MC4a LINE L1 5595 5920 -1888 430 291 8 8 chr4 74609329 74609446 -127718901 - L2 LINE L2 0 3313 3197 34 24 0 0 chr4 74609458 74609499 -127718848 + AT_rich Low_complexity Low_complexity 1 41 0 23 86 0 0 chr4 74609514 74609572 -127718775 + AT_rich Low_complexity Low_complexity 1 58 0 288 0 0 0 chr4 74609685 74609717 -127718630 + (TG)n Simple_repeat Simple_repeat 2 33 0 980 262 63 80 chr4 74610314 74610868 -127717479 - L2 LINE L2 -1 3312 2772 2149 138 6 3 chr4 74610868 74611179 -127717168 + AluSx SINE Alu 1 312 0 980 262 63 80 chr4 74611179 74611298 -127717049 - L2 LINE L2 -541 2772 2653 193 98 49 0 chr4 74611318 74611359 -127716988 + (TA)n Simple_repeat Simple_repeat 1 43 0 192 241 17 17 chr4 74611359 74611417 -127716930 - MIR3 SINE MIR -13 195 138 216 0 0 0 chr4 74611417 74611441 -127716906 + (T)n Simple_repeat Simple_repeat 1 24 0 1018 195 0 5 chr4 74611462 74611657 -127716690 - AluSx SINE Alu -89 223 30 1436 198 28 90 chr4 74612274 74612739 -127715608 + MER67D LTR ERV1 1 436 -78 1932 146 3 32 chr4 74612865 74613180 -127715167 - AluJo SINE Alu -6 306 1 762 170 20 7 chr4 74613180 74613327 -127715020 + L1M2 LINE L1 5460 5608 -704 2153 132 0 3 chr4 74613363 74613667 -127714680 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr4 74613667 74613696 -127714651 + AT_rich Low_complexity Low_complexity 1 29 0 373 254 87 0 chr4 74613834 74613972 -127714375 + MER103 DNA DNA 11 160 -6 189 0 0 0 chr4 74614243 74614264 -127714083 + (T)n Simple_repeat Simple_repeat 1 21 0 247 180 49 16 chr4 74614429 74614490 -127713857 + L2 LINE L2 3210 3272 0 243 146 0 0 chr4 74615594 74615635 -127712712 + (TA)n Simple_repeat Simple_repeat 2 42 0 183 297 0 47 chr4 74616168 74616232 -127712115 - L2 LINE L2 -2 3311 3251 948 308 103 31 chr4 74616422 74617130 -127711217 - L2 LINE L2 0 3313 2555 864 215 35 12 chr4 74617187 74617399 -127710948 + MER20 DNA MER1_type 1 214 -5 1827 275 126 65 chr4 74617461 74617800 -127710547 - L2 LINE L2 -768 2546 2229 2448 80 0 3 chr4 74617800 74618102 -127710245 + AluSx SINE Alu 1 301 -11 1827 275 126 65 chr4 74618102 74618908 -127709439 - L2 LINE L2 -1085 2229 1332 421 280 110 115 chr4 74619168 74619979 -127708368 + L2 LINE L2 1358 2164 -1150 270 246 14 14 chr4 74620011 74620080 -127708267 + L2 LINE L2 3245 3313 0 559 198 0 9 chr4 74620875 74620986 -127707361 - Tigger7 DNA MER2_type 0 2487 2378 1215 211 4 0 chr4 74620999 74621227 -127707120 - Tigger7 DNA MER2_type -475 230 2 1309 195 50 27 chr4 74621492 74621753 -127706594 + AluJo SINE Alu 1 267 -45 1993 212 126 27 chr4 74621780 74622440 -127705907 - MER50 LTR ERV1 0 734 10 1664 156 33 30 chr4 74623457 74623759 -127704588 + AluJb SINE Alu 1 303 -9 229 338 32 45 chr4 74624329 74624486 -127703861 - L2 LINE L2 -186 3086 2932 24 0 0 0 chr4 74625782 74625806 -127702541 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 74627201 74627222 -127701125 + AT_rich Low_complexity Low_complexity 1 21 0 267 313 50 20 chr4 74627858 74627957 -127700390 + MIR SINE MIR 43 144 -64 504 346 34 15 chr4 74628111 74628380 -127699967 + LTR16B LTR ERVL 132 405 -59 1088 159 23 22 chr4 74628840 74629177 -127699170 + MLT2A2 LTR ERVL 214 451 -2 1506 274 45 34 chr4 74629566 74629923 -127698424 + L1MC4a LINE L1 5317 5686 -2122 222 37 0 0 chr4 74629923 74629950 -127698397 + (TA)n Simple_repeat Simple_repeat 2 28 0 1506 274 45 34 chr4 74629950 74630238 -127698109 + L1MC4a LINE L1 5686 5969 -1839 206 109 16 47 chr4 74630250 74630314 -127698033 + (TA)n Simple_repeat Simple_repeat 1 62 0 2050 223 36 47 chr4 74630314 74630866 -127697481 - MLT2B3 LTR ERVL -8 546 1 6635 151 24 58 chr4 74630866 74631186 -127697161 - ERVL-B3 LTR ERVL -7 5757 5427 273 119 0 0 chr4 74631186 74631228 -127697119 + (TA)n Simple_repeat Simple_repeat 2 43 0 6635 151 24 58 chr4 74631228 74632268 -127696079 - ERVL-B3 LTR ERVL -337 5427 4444 741 142 31 0 chr4 74632268 74632395 -127695952 + MER61D LTR ERV1 371 501 0 305 209 0 0 chr4 74632396 74632463 -127695884 - MLT2B3 LTR ERVL -487 67 1 1262 175 84 142 chr4 74632670 74633183 -127695164 - MLT1D LTR MaLR 0 505 23 447 294 49 0 chr4 74633308 74633451 -127694896 + L2 LINE L2 2876 3025 -288 421 237 69 8 chr4 74633485 74633616 -127694731 - MLT1J2 LTR MaLR -282 168 30 2085 70 0 0 chr4 74634109 74634380 -127693967 + L1PA7 LINE L1 5884 6154 0 223 304 0 38 chr4 74634853 74634932 -127693415 + L2 LINE L2 3237 3312 -1 233 340 64 49 chr4 74635847 74636050 -127692297 + LTR16A LTR ERVL 24 229 -221 2157 124 0 7 chr4 74636220 74636527 -127691820 + AluSg SINE Alu 1 305 -5 808 97 8 0 chr4 74636527 74636651 -127691696 - LTR26 LTR ERV1 -471 132 8 290 225 178 8 chr4 74636806 74636935 -127691412 - Charlie7 DNA MER1_type -2455 157 7 1511 196 0 67 chr4 74637713 74638025 -127690322 + AluJb SINE Alu 1 291 -21 27 0 0 0 chr4 74638025 74638052 -127690295 + AT_rich Low_complexity Low_complexity 1 27 0 2053 200 37 24 chr4 74639086 74639547 -127688800 - MLT1C LTR MaLR 0 467 1 234 323 121 8 chr4 74639968 74640092 -127688255 - L2 LINE L2 -955 2359 2222 180 0 0 0 chr4 74640257 74640277 -127688070 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 25 31 0 0 chr4 74640581 74640613 -127687734 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 74641004 74641025 -127687322 + AT_rich Low_complexity Low_complexity 1 21 0 302 315 138 30 chr4 74641235 74641309 -127687038 + L2 LINE L2 2827 2892 -380 2091 100 28 3 chr4 74641309 74641598 -127686749 - AluSc SINE Alu -13 296 1 302 315 138 30 chr4 74641598 74641726 -127686621 + L2 LINE L2 2892 3051 -221 369 347 13 20 chr4 74642007 74642157 -127686190 + L2 LINE L2 3123 3271 -1 381 162 0 0 chr4 74642158 74642226 -127686121 + (TGGA)n Simple_repeat Simple_repeat 2 69 0 2217 111 7 0 chr4 74642778 74643075 -127685272 + AluSx SINE Alu 1 299 -13 4224 151 25 27 chr4 74644028 74645510 -127682837 + L1PB1 LINE L1 4516 5985 -166 2071 166 35 31 chr4 74645510 74646059 -127682288 - MLT2A2 LTR ERVL 0 554 1 1132 119 6 0 chr4 74646059 74646227 -127682120 + L1PB1 LINE L1 5981 6149 -2 2395 101 0 0 chr4 74646607 74646915 -127681432 + AluSc SINE Alu 1 308 -1 37 69 0 0 chr4 74647005 74647077 -127681270 + AT_rich Low_complexity Low_complexity 1 72 0 235 233 0 33 chr4 74647262 74647322 -127681025 + AluS SINE Alu 5 62 -237 1633 127 0 18 chr4 74647457 74647686 -127680661 - AluSx SINE Alu -87 225 1 309 239 140 18 chr4 74647885 74647990 -127680357 + MIR SINE MIR 50 161 -47 557 219 33 0 chr4 74649282 74649433 -127678914 - MER69 DNA AcHobo -22 2504 2349 440 194 10 10 chr4 74649438 74649536 -127678811 - MER69 DNA AcHobo -1128 98 1 1851 155 7 16 chr4 74651377 74651686 -127676661 + AluJb SINE Alu 1 306 -6 457 230 0 68 chr4 74651813 74652004 -127676343 - L1ME4a LINE L1 -5 6116 5939 426 271 105 19 chr4 74652016 74652282 -127676065 - L1ME4a LINE L1 -217 5904 5616 875 234 44 13 chr4 74652781 74653007 -127675340 + MIR SINE MIR 28 260 -2 2108 121 0 3 chr4 74654132 74654421 -127673926 + AluSg SINE Alu 1 288 -22 299 318 97 20 chr4 74655702 74655897 -127672450 - MIR SINE MIR -4 258 49 198 0 0 0 chr4 74655985 74656007 -127672340 + (CA)n Simple_repeat Simple_repeat 1 22 0 354 282 27 18 chr4 74656211 74656321 -127672026 + MER5A DNA MER1_type 1 111 -78 2110 129 3 0 chr4 74657276 74657571 -127670776 - AluSx SINE Alu -16 296 1 942 145 0 0 chr4 74657577 74657715 -127670632 - AluJo SINE Alu -174 138 1 1189 224 37 4 chr4 74659354 74659595 -127668752 + AluJo SINE Alu 39 287 -25 202 286 0 0 chr4 74659608 74659664 -127668683 + MIR SINE MIR 98 153 -109 1816 170 0 23 chr4 74659676 74659976 -127668371 + AluJb SINE Alu 4 296 -16 594 197 166 10 chr4 74660211 74660404 -127667943 + Charlie2 DNA MER1_type 6 228 -2554 225 122 0 0 chr4 74660404 74660445 -127667902 - HSMAR2 DNA Mariner -1 1301 1261 824 125 125 0 chr4 74660454 74660582 -127667765 + AluSg SINE Alu 1 144 -166 1594 110 118 4 chr4 74660582 74660861 -127667486 + AluSg SINE Alu 17 322 0 7286 108 27 46 chr4 74660901 74660944 -127667403 - HSMAR2 DNA Mariner -51 1251 1209 1472 141 23 11 chr4 74660944 74661207 -127667140 + L1MA5A LINE L1 6032 6297 0 7286 108 27 46 chr4 74661207 74661243 -127667104 - HSMAR2 DNA Mariner -93 1209 1174 2164 125 7 0 chr4 74661243 74661538 -127666809 + AluSx SINE Alu 4 300 -12 7286 108 27 46 chr4 74661538 74662107 -127666240 - HSMAR2 DNA Mariner -128 1174 595 7373 40 4 2 chr4 74662107 74663150 -127665197 + L1PA5 LINE L1 5110 6154 0 7286 108 27 46 chr4 74663150 74663774 -127664573 - HSMAR2 DNA Mariner -707 595 2 248 333 20 0 chr4 74663774 74663872 -127664475 + Charlie2 DNA MER1_type 225 324 -2458 320 241 28 28 chr4 74663891 74663999 -127664348 + Charlie2 DNA MER1_type 1894 2001 -861 * 666 219 57 94 chr4 74663996 74664402 -127663945 - Charlie1b DNA MER1_type -126 397 7 2255 255 60 36 chr4 74664484 74665280 -127663067 - MER69 DNA AcHobo -411 815 1 1142 146 75 71 chr4 74665572 74665667 -127662680 - MER33 DNA MER1_type -2262 323 230 2256 122 0 7 chr4 74665667 74665963 -127662384 - AluSx SINE Alu -18 294 1 1142 146 75 71 chr4 74665963 74666189 -127662158 - MER33 DNA MER1_type -2355 230 1 235 346 39 24 chr4 74666200 74666327 -127662020 - MIR SINE MIR -86 176 48 1212 203 45 14 chr4 74666338 74666526 -127661821 + MER69 DNA AcHobo 2102 2283 -243 1679 182 21 0 chr4 74666526 74666817 -127661530 + AluJb SINE Alu 1 297 -15 1212 203 45 14 chr4 74666817 74666982 -127661365 + MER69 DNA AcHobo 2283 2466 -60 1222 172 39 21 chr4 74667663 74667976 -127660371 - MER33 DNA MER1_type -8 316 1 2466 203 97 7 chr4 74668051 74669357 -127658990 + L1MC2 LINE L1 4478 5907 -437 1405 156 80 34 chr4 74669363 74669626 -127658721 + AluJo SINE Alu 14 288 -24 229 135 0 0 chr4 74669626 74669663 -127658684 + Alu SINE Alu 81 117 -183 1934 142 28 86 chr4 74669663 74670128 -127658219 + L1MC2 LINE L1 5906 6343 -1 272 207 0 37 chr4 74671181 74671263 -127657084 + (TA)n Simple_repeat Simple_repeat 1 79 0 262 208 0 75 chr4 74671316 74671436 -127656911 - L1MEc LINE L1 -5275 1121 1011 2129 128 10 0 chr4 74671487 74671785 -127656562 + AluSx SINE Alu 1 301 -11 228 337 30 10 chr4 74671990 74672091 -127656256 - L1MEc LINE L1 -5493 712 610 1436 141 95 3 chr4 74672990 74673273 -127655074 - L1MA8 LINE L1 -6 6285 5977 2078 120 3 41 chr4 74673409 74673725 -127654622 + AluSx SINE Alu 1 304 -8 279 222 130 58 chr4 74673729 74673990 -127654357 - L1ME4a LINE L1 -86 6035 5756 14739 116 12 16 chr4 74674012 74674421 -127653926 + L1P3 LINE L1 1 410 -6051 207 0 0 0 chr4 74674421 74674444 -127653903 + (TTG)n Simple_repeat Simple_repeat 2 24 0 14739 116 12 16 chr4 74674444 74677565 -127650782 + L1P3 LINE L1 410 3536 -2925 4453 79 15 8 chr4 74677557 74678213 -127650134 + L1P3 LINE L1 4106 4766 -1695 * 813 173 46 6 chr4 74678213 74678386 -127649961 - LTR3b LTR ERVK 0 500 321 515 121 17 112 chr4 74678386 74678502 -127649845 - HERVK3 LTR ERVK -659 5286 3058 4459 213 37 2 chr4 74678531 74679487 -127648860 - HERVK3 LTR ERVK -4934 2309 1321 296 320 19 0 chr4 74679475 74679578 -127648769 - HERVK3 LTR ERVK -6563 680 576 * 520 198 87 97 chr4 74679630 74679837 -127648510 - HERVK3 LTR ERVK -6971 272 68 1683 151 71 12 chr4 74680113 74680437 -127647910 - LTR3b LTR ERVK 0 500 158 7135 46 6 0 chr4 74680447 74682150 -127646197 + L1PA7 LINE L1 4445 6154 0 2448 77 0 3 chr4 74683406 74683718 -127644629 + AluY SINE Alu 1 311 0 274 300 36 36 chr4 74684113 74684253 -127644094 + MIR SINE MIR 69 208 -54 468 82 0 0 chr4 74684374 74684435 -127643912 + Alu SINE Alu 234 294 -17 309 256 0 0 chr4 74684709 74684787 -127643560 - L1MC3 LINE L1 -12 7773 7696 205 246 105 0 chr4 74684788 74684845 -127643502 - L2 LINE L2 -58 3255 3193 347 253 147 32 chr4 74685272 74685367 -127642980 - L2 LINE L2 0 3272 3167 258 176 35 0 chr4 74685922 74686007 -127642340 + (TA)n Simple_repeat Simple_repeat 2 89 0 1582 241 83 27 chr4 74686165 74686613 -127641734 + MER69 DNA AcHobo 75 547 -1979 539 189 33 26 chr4 74686591 74686744 -127641603 + MER69 DNA AcHobo 2267 2420 -106 * 244 62 0 0 chr4 74686744 74686776 -127641571 + U3 snRNA snRNA 1 32 -185 191 261 43 0 chr4 74687178 74687224 -127641123 - MIR SINE MIR -21 241 194 2514 86 0 6 chr4 74687497 74687849 -127640498 - AluSq SINE Alu 0 350 1 426 291 61 27 chr4 74688025 74688108 -127640239 - MIR SINE MIR 0 262 183 1914 86 0 0 chr4 74688108 74688352 -127639995 - AluSg SINE Alu -12 298 55 426 291 61 27 chr4 74688352 74688492 -127639855 - MIR SINE MIR -79 183 30 1131 147 14 60 chr4 74689020 74689238 -127639109 - AluJo SINE Alu -18 294 87 274 286 105 0 chr4 74689238 74689343 -127639004 - MIR SINE MIR -59 203 88 1126 138 0 0 chr4 74689801 74689961 -127638386 + AluSg/x SINE Alu 135 294 -16 24 67 0 0 chr4 74691101 74691146 -127637201 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr4 74691688 74691711 -127636636 + AT_rich Low_complexity Low_complexity 1 23 0 207 270 45 56 chr4 74692530 74692619 -127635728 - MIR3 SINE MIR -1 207 120 2273 98 3 0 chr4 74693511 74693807 -127634540 - AluSx SINE Alu -15 297 1 426 114 0 0 chr4 74694137 74694207 -127634140 + (TC)n Simple_repeat Simple_repeat 1 70 0 28 61 0 0 chr4 74696440 74696489 -127631858 + AT_rich Low_complexity Low_complexity 1 49 0 263 311 0 0 chr4 74696612 74696702 -127631645 + T-rich Low_complexity Low_complexity 1 90 0 416 328 100 7 chr4 74697556 74697741 -127630606 + MIR3 SINE MIR 1 205 -3 2443 90 0 0 chr4 74697861 74698161 -127630186 + AluSx SINE Alu 1 300 -12 677 276 57 13 chr4 74698208 74698447 -127629900 + MIR SINE MIR 18 262 0 28 48 0 0 chr4 74698694 74698736 -127629611 + AT_rich Low_complexity Low_complexity 1 42 0 1073 90 8 0 chr4 74699119 74699253 -127629094 + AluSq/x SINE Alu 1 135 -177 2311 102 0 0 chr4 74699254 74699549 -127628798 + AluSx SINE Alu 2 296 -16 23 33 0 0 chr4 74699598 74699628 -127628719 + AT_rich Low_complexity Low_complexity 1 30 0 268 374 48 21 chr4 74700829 74701016 -127627331 - MIR3 SINE MIR -11 197 6 240 35 0 0 chr4 74701213 74701242 -127627105 + (T)n Simple_repeat Simple_repeat 1 29 0 567 132 47 28 chr4 74701242 74701348 -127626999 + AluJb SINE Alu 183 290 -22 199 189 38 57 chr4 74701348 74701401 -127626946 + L3 LINE CR1 1517 1568 -9 419 252 10 0 chr4 74701432 74701535 -127626812 + L2 LINE L2 2658 2761 -553 2150 129 3 22 chr4 74701545 74701862 -127626485 - AluSx SINE Alu 0 312 2 2145 128 0 3 chr4 74702073 74702378 -127625969 + AluSx SINE Alu 1 304 -8 1598 172 52 0 chr4 74702392 74702660 -127625687 + AluJo SINE Alu 6 287 -25 256 330 100 56 chr4 74703056 74703326 -127625021 - L2 LINE L2 -183 3089 2808 492 246 142 22 chr4 74703350 74703582 -127624765 - MIR SINE MIR -1 261 2 242 349 240 10 chr4 74703693 74704106 -127624241 - L2 LINE L2 -622 2692 2185 2131 101 7 7 chr4 74704110 74704435 -127623912 - AluSc SINE Alu 0 344 20 231 239 0 0 chr4 74709225 74709271 -127619076 + L2 LINE L2 3251 3296 -17 279 206 0 59 chr4 74709402 74709470 -127618877 - MIR3 SINE MIR -10 198 135 2155 137 3 6 chr4 74709930 74710243 -127618104 - AluSx SINE Alu 0 312 1 2122 78 82 0 chr4 74711669 74711951 -127616396 - AluSc SINE Alu -4 305 1 2282 99 3 6 chr4 74711963 74712277 -127616070 - AluSp SINE Alu 0 313 1 2426 86 0 6 chr4 74712595 74712909 -127615438 + AluSx SINE Alu 1 312 0 252 345 0 0 chr4 74713087 74713171 -127615176 - MER5A DNA MER1_type -86 103 20 1947 143 7 0 chr4 74713541 74713850 -127614497 - AluSx SINE Alu 0 311 1 24 96 0 0 chr4 74714065 74714138 -127614209 + AT_rich Low_complexity Low_complexity 1 73 0 2398 76 0 0 chr4 74714247 74714551 -127613796 - AluY SINE Alu -7 304 1 282 275 148 21 chr4 74714689 74714831 -127613516 - L1ME LINE L1 -354 5767 5608 502 317 55 20 chr4 74714841 74715043 -127613304 + MIR SINE MIR 1 209 -53 646 243 17 33 chr4 74715100 74715281 -127613066 + MER5A DNA MER1_type 12 189 0 2339 92 0 7 chr4 74715286 74715592 -127612755 + AluSp SINE Alu 2 305 -8 232 301 150 23 chr4 74716287 74716420 -127611927 + MIR SINE MIR 68 217 -45 807 273 72 10 chr4 74716475 74716768 -127611579 - LTR16B LTR ERVL 0 464 154 237 173 96 0 chr4 74716799 74716851 -127611496 - LTR16B LTR ERVL -407 57 1 342 206 0 0 chr4 74716986 74717049 -127611298 + MIR SINE MIR 183 245 -17 819 258 134 24 chr4 74717393 74717684 -127610663 - L2 LINE L2 -1 3312 2990 247 355 145 16 chr4 74720436 74720560 -127607787 + L2 LINE L2 3116 3255 -17 356 268 21 10 chr4 74720576 74720673 -127607674 - MIR SINE MIR -108 154 57 461 354 126 12 chr4 74720847 74721277 -127607070 + L2 LINE L2 2439 2917 -397 302 258 21 21 chr4 74721299 74721396 -127606951 - MIR SINE MIR 0 262 166 297 303 112 17 chr4 74721605 74721783 -127606564 + L2 LINE L2 3119 3313 0 446 184 103 108 chr4 74721832 74722017 -127606330 - MIR SINE MIR -20 242 59 2297 128 0 0 chr4 74722034 74722346 -127606001 + AluSx SINE Alu 1 312 0 2087 114 0 17 chr4 74722346 74722663 -127605684 + AluSx SINE Alu 1 312 0 426 358 0 8 chr4 74722969 74723103 -127605244 - L2 LINE L2 -208 3064 2932 2401 72 7 10 chr4 74723145 74723450 -127604897 - AluSq SINE Alu -9 304 1 408 270 85 35 chr4 74723637 74723837 -127604510 - MIR SINE MIR 0 262 53 1858 133 48 10 chr4 74724274 74724568 -127603779 + AluJo SINE Alu 1 305 -7 2315 109 0 0 chr4 74725445 74725747 -127602600 + AluSg SINE Alu 1 302 -8 194 157 0 39 chr4 74725997 74726016 -127602331 + (TAA)n Simple_repeat Simple_repeat 1 19 -30 2280 94 0 0 chr4 74726016 74726302 -127602045 + AluSg SINE Alu 1 286 -24 194 157 0 39 chr4 74726302 74726333 -127602014 + (TAA)n Simple_repeat Simple_repeat 19 49 0 281 163 0 0 chr4 74727107 74727150 -127601197 + L2 LINE L2 3263 3305 -8 761 296 66 4 chr4 74727245 74727488 -127600859 + MIR SINE MIR 2 259 -3 490 152 0 0 chr4 74727495 74727573 -127600774 + Tigger5 DNA MER2_type 1 78 -2245 273 207 17 0 chr4 74727573 74727631 -127600716 - Tigger5 DNA MER2_type -3 2320 2262 2090 125 10 3 chr4 74729420 74729725 -127598622 + AluSx SINE Alu 1 307 -5 2290 104 3 0 chr4 74730709 74731007 -127597340 - AluSp SINE Alu -14 299 1 429 300 106 12 chr4 74731148 74731308 -127597039 + MER5A DNA MER1_type 15 189 0 330 335 53 44 chr4 74731726 74731953 -127596394 - L3 LINE CR1 -16 1561 1333 * 1366 266 85 42 chr4 74731936 74732512 -127595835 + L2 LINE L2 2033 2633 -681 553 165 0 0 chr4 74732639 74732724 -127595623 + FRAM/FAM SINE Alu 1 84 -92 638 233 52 85 chr4 74733094 74733364 -127594983 + MIR SINE MIR 2 262 0 1256 204 45 101 chr4 74733603 74733794 -127594553 + L1ME1 LINE L1 5703 5903 -263 2301 108 3 0 chr4 74733794 74734101 -127594246 + AluSg SINE Alu 1 308 -2 1256 204 45 101 chr4 74734101 74734395 -127593952 + L1ME1 LINE L1 5903 6161 -5 2041 204 48 8 chr4 74734422 74734937 -127593410 - L1M4 LINE L1 -2091 4055 3520 556 185 54 88 chr4 74734925 74735042 -127593305 - L1MEc LINE L1 -6147 249 139 * 1938 43 0 0 chr4 74735042 74735294 -127593053 + L1PA5 LINE L1 5907 6158 0 556 185 54 88 chr4 74735294 74735380 -127592967 - L1MEc LINE L1 -6257 139 52 26 30 0 0 chr4 74735502 74735535 -127592812 + AT_rich Low_complexity Low_complexity 1 33 0 573 275 189 20 chr4 74735664 74736146 -127592201 + L2 LINE L2 2646 3248 -65 1096 346 89 15 chr4 74736243 74736896 -127591451 - L3 LINE CR1 -420 1157 457 2307 116 0 0 chr4 74738136 74738439 -127589908 - AluSx SINE Alu -9 303 1 23 68 0 0 chr4 74738590 74738634 -127589713 + AT_rich Low_complexity Low_complexity 1 44 0 291 246 48 48 chr4 74738716 74738842 -127589505 - L2 LINE L2 -309 2963 2838 2060 138 0 3 chr4 74738881 74739177 -127589170 - AluSx SINE Alu -17 295 1 246 75 25 0 chr4 74739408 74739448 -127588899 - L1MA7 LINE L1 -45 6246 6206 1926 161 11 0 chr4 74739523 74739809 -127588538 + AluSx SINE Alu 1 289 -23 2243 113 3 0 chr4 74740109 74740401 -127587946 + AluSx SINE Alu 1 293 -19 387 251 234 11 chr4 74741553 74741728 -127586619 + MIR SINE MIR 20 233 -29 2342 112 0 0 chr4 74742051 74742356 -127585991 - AluSx SINE Alu -7 305 1 202 261 0 78 chr4 74742573 74742688 -127585659 + L2 LINE L2 2275 2380 -934 1623 98 188 12 chr4 74742688 74742944 -127585403 - AluSg1 SINE Alu -8 301 1 204 349 0 0 chr4 74743046 74743109 -127585238 - L2 LINE L2 -219 3053 2991 3350 86 0 11 chr4 74744285 74744749 -127583598 + L1PA6 LINE L1 5696 6154 0 2394 102 0 0 chr4 74744778 74745081 -127583266 - AluSx SINE Alu -3 309 7 1175 133 133 0 chr4 74745502 74745612 -127582735 - MER30 DNA MER1_type 0 230 136 2354 97 0 0 chr4 74745612 74745912 -127582435 - AluSx SINE Alu -12 300 1 1175 133 133 0 chr4 74745912 74746004 -127582343 - MER30 DNA MER1_type -94 136 1 2252 96 7 0 chr4 74746490 74746782 -127581565 + AluSq SINE Alu 1 294 -19 470 187 22 0 chr4 74746797 74746888 -127581459 + MER94 DNA DNA 42 134 0 630 248 150 34 chr4 74747409 74747643 -127580704 + MIR SINE MIR 2 262 0 1412 99 0 86 chr4 74747922 74748143 -127580204 + AluSq SINE Alu 1 202 -111 651 180 16 0 chr4 74748168 74748290 -127580057 + FLAM_A SINE Alu 2 125 -8 2341 74 6 13 chr4 74749067 74749378 -127578969 + AluSc SINE Alu 1 309 0 42 0 0 0 chr4 74749498 74749540 -127578807 + GC_rich Low_complexity Low_complexity 1 42 0 237 132 0 0 chr4 74749595 74749633 -127578714 + (TCTCCC)n Simple_repeat Simple_repeat 3 40 0 351 349 6 30 chr4 74749638 74749874 -127578473 + CT-rich Low_complexity Low_complexity 1 230 0 2054 102 0 7 chr4 74750009 74750317 -127578030 - AluSx SINE Alu 0 306 1 192 97 0 0 chr4 74751542 74751573 -127576774 + (GGA)n Simple_repeat Simple_repeat 2 32 0 234 246 0 0 chr4 74751589 74751646 -127576701 + GA-rich Low_complexity Low_complexity 1 57 0 213 154 0 0 chr4 74751783 74751822 -127576525 + GA-rich Low_complexity Low_complexity 3 41 0 26 30 0 0 chr4 74752839 74752872 -127575475 + AT_rich Low_complexity Low_complexity 1 33 0 2311 88 0 10 chr4 74753462 74753768 -127574579 - AluSx SINE Alu -9 303 1 886 82 30 0 chr4 74753791 74753926 -127574421 - L1PA4 LINE L1 0 6155 6017 329 301 290 0 chr4 74754114 74754300 -127574047 - MIR SINE MIR -10 252 13 740 230 120 0 chr4 74754389 74754580 -127573767 - MIR SINE MIR -21 241 28 21 57 0 0 chr4 74754594 74754629 -127573718 + AT_rich Low_complexity Low_complexity 1 35 0 989 153 0 0 chr4 74754792 74754949 -127573398 - AluSg/x SINE Alu -1 308 152 2164 120 0 0 chr4 74755002 74755313 -127573034 - AluSx SINE Alu 0 311 1 210 204 23 0 chr4 74755338 74755382 -127572965 - L2 LINE L2 -8 3264 3220 206 210 177 0 chr4 74755645 74755707 -127572640 + MIR SINE MIR 66 138 -70 2175 102 6 26 chr4 74756141 74756454 -127571893 + AluSg SINE Alu 1 307 -3 1658 158 68 0 chr4 74756537 74756815 -127571532 + AluSx SINE Alu 1 297 -15 2506 68 7 3 chr4 74757114 74757423 -127570924 + AluSp SINE Alu 1 310 -3 517 231 191 31 chr4 74757425 74757650 -127570697 + MIR SINE MIR 2 262 0 2531 75 3 0 chr4 74757675 74757982 -127570365 + AluSp SINE Alu 1 308 -5 1362 191 66 11 chr4 74757989 74758261 -127570086 + AluJo SINE Alu 1 287 -25 2268 101 3 0 chr4 74758314 74758621 -127569726 - AluY SINE Alu -3 308 1 351 339 33 6 chr4 74758627 74758810 -127569537 - MER5A DNA MER1_type -1 188 1 2329 96 0 0 chr4 74759048 74759339 -127569008 + AluSc SINE Alu 3 293 -16 473 223 115 0 chr4 74759477 74759634 -127568713 - HsTC2 DNA Tc2 -116 1782 1608 1838 150 35 0 chr4 74759714 74760000 -127568347 + AluJb SINE Alu 1 296 -16 269 328 34 61 chr4 74760305 74760601 -127567746 - L2 LINE L2 -449 2865 2578 2249 135 0 0 chr4 74760605 74760916 -127567431 + AluSq SINE Alu 1 311 -2 2245 83 0 21 chr4 74760993 74761283 -127567064 - AluSg SINE Alu -26 284 1 323 218 18 0 chr4 74761295 74761372 -127566975 + AluSg/x SINE Alu 124 185 -117 534 153 0 45 chr4 74761668 74761779 -127566568 + FLAM_A SINE Alu 36 141 -1 453 233 0 0 chr4 74762141 74762257 -127566090 + (TA)n Simple_repeat Simple_repeat 1 119 -10 2429 82 3 7 chr4 74762257 74762561 -127565786 - AluSx SINE Alu -9 303 1 453 233 0 0 chr4 74762561 74762573 -127565774 + (TA)n Simple_repeat Simple_repeat 118 129 0 1733 89 0 9 chr4 74762931 74763155 -127565192 - AluSx SINE Alu -3 307 86 613 143 22 0 chr4 74763183 74763274 -127565073 - AluSx SINE Alu -220 93 1 377 94 0 0 chr4 74763414 74763467 -127564880 - Alu SINE Alu -248 53 1 844 129 0 50 chr4 74763512 74763651 -127564696 - AluSq/x SINE Alu -180 132 1 21 36 0 0 chr4 74763715 74763743 -127564604 + AT_rich Low_complexity Low_complexity 1 28 0 953 118 105 7 chr4 74763770 74763923 -127564424 - AluSg/x SINE Alu -8 304 137 697 135 29 0 chr4 74764406 74764510 -127563837 + U6 snRNA snRNA 1 107 0 4285 60 6 2 chr4 74764905 74765443 -127562904 - L1PA7 LINE L1 0 6154 5615 671 146 10 0 chr4 74765672 74765775 -127562572 - U6 snRNA snRNA -3 104 1 2188 97 7 7 chr4 74765799 74766089 -127562258 - AluSq SINE Alu -23 290 1 213 152 43 0 chr4 74767467 74767513 -127560834 + (CGG)n Simple_repeat Simple_repeat 2 49 0 25 31 0 0 chr4 74767716 74767748 -127560599 + GC_rich Low_complexity Low_complexity 1 32 0 198 103 0 0 chr4 74767910 74767939 -127560408 + (CGG)n Simple_repeat Simple_repeat 3 31 0 21 0 0 0 chr4 74768002 74768023 -127560324 + GC_rich Low_complexity Low_complexity 1 21 0 2097 96 46 0 chr4 74769915 74770195 -127558152 - AluSx SINE Alu -17 295 3 884 212 6 6 chr4 74770628 74770793 -127557554 + FRAM SINE Alu 1 165 -11 1677 126 65 17 chr4 74770818 74771112 -127557235 - AluSx SINE Alu -4 308 1 1474 174 10 54 chr4 74771423 74771717 -127556630 + AluJb SINE Alu 10 290 -22 312 264 28 9 chr4 74772853 74772959 -127555388 + (TA)n Simple_repeat Simple_repeat 2 109 0 2498 87 3 0 chr4 74773040 74773349 -127554998 + AluSp SINE Alu 1 310 -3 32 0 0 0 chr4 74773386 74773418 -127554929 + AT_rich Low_complexity Low_complexity 1 32 0 2440 84 3 6 chr4 74773432 74773743 -127554604 + AluSx SINE Alu 1 310 -2 861 116 0 39 chr4 74773781 74773910 -127554437 - FLAM_C SINE Alu -9 124 1 2005 156 3 0 chr4 74775666 74775974 -127552373 - AluSp SINE Alu -4 309 1 478 236 236 6 chr4 74776644 74776826 -127551521 - MIR SINE MIR -11 251 28 243 232 108 0 chr4 74777425 74777504 -127550843 - MIR SINE MIR -64 144 68 1991 127 13 32 chr4 74777951 74778265 -127550082 + AluSx SINE Alu 1 308 -4 2206 119 0 3 chr4 74778483 74778786 -127549561 + AluY SINE Alu 1 302 -9 1159 329 3 77 chr4 74778796 74779121 -127549226 - AluSx SINE Alu -1 301 1 1848 135 11 0 chr4 74779121 74779388 -127548959 + AluSx SINE Alu 26 295 -17 280 139 0 0 chr4 74779457 74779500 -127548847 - THE1C LTR MaLR 0 375 333 1185 83 13 0 chr4 74779502 74779658 -127548689 + L1PA10 LINE L1 6011 6168 0 1084 96 0 40 chr4 74779658 74779827 -127548520 + L1MA4A LINE L1 6129 6298 -5 1369 105 28 26 chr4 74779843 74780139 -127548208 - THE1C LTR MaLR -25 350 1 2136 104 11 3 chr4 74781146 74781433 -127546914 + AluSq SINE Alu 1 289 -24 194 62 31 0 chr4 74781583 74781615 -127546732 + (TAA)n Simple_repeat Simple_repeat 1 33 0 336 199 60 106 chr4 74781624 74781775 -127546572 - MIR SINE MIR 0 262 119 833 160 0 0 chr4 74781877 74782008 -127546339 - FLAM_C SINE Alu -2 131 1 744 149 16 0 chr4 74782178 74782299 -127546048 - AluSg/x SINE Alu -14 298 176 2092 135 7 0 chr4 74782685 74782982 -127545365 + AluSx SINE Alu 1 299 -13 30 69 0 0 chr4 74783498 74783556 -127544791 + AT_rich Low_complexity Low_complexity 1 58 0 2235 101 3 0 chr4 74783794 74784091 -127544256 + AluSg SINE Alu 1 298 -12 274 243 99 18 chr4 74784107 74784218 -127544129 + L1ME4a LINE L1 5989 6108 -13 26 30 0 0 chr4 74784231 74784264 -127544083 + AT_rich Low_complexity Low_complexity 1 33 0 264 264 44 0 chr4 74784396 74784487 -127543860 - L1MC4 LINE L1 -1334 6708 6614 1989 150 0 0 chr4 74784539 74784832 -127543515 + AluSx SINE Alu 1 293 -19 2107 94 0 66 chr4 74784832 74785150 -127543197 + AluSx SINE Alu 1 297 -15 469 285 24 0 chr4 74785153 74785276 -127543071 + MIR SINE MIR 19 144 -118 848 175 35 18 chr4 74785353 74785524 -127542823 - FRAM SINE Alu -8 168 1 2163 79 0 4 chr4 74785812 74786079 -127542268 - AluSg SINE Alu -13 297 32 2266 105 0 7 chr4 74786093 74786387 -127541960 - AluSg SINE Alu -18 292 1 2466 77 0 10 chr4 74786552 74786865 -127541482 + AluY SINE Alu 1 310 -1 677 207 0 0 chr4 74786935 74787051 -127541296 + FLAM_A SINE Alu 1 116 -17 1499 160 72 4 chr4 74787061 74787323 -127541024 - AluJb SINE Alu -24 288 9 381 290 30 18 chr4 74788316 74788485 -127539862 + L2 LINE L2 3105 3275 -38 1992 116 13 26 chr4 74788489 74788791 -127539556 - AluSx SINE Alu -14 298 1 1601 176 3 49 chr4 74788791 74789097 -127539250 - AluJb SINE Alu -20 292 1 1503 204 20 33 chr4 74789337 74789641 -127538706 + AluJb SINE Alu 1 300 -12 2355 97 0 0 chr4 74790103 74790401 -127537946 - AluSg SINE Alu -12 298 1 542 139 19 37 chr4 74790596 74790704 -127537643 + AluSq/x SINE Alu 2 107 -205 786 212 17 85 chr4 74790930 74791223 -127537124 + AluSg SINE Alu 26 298 -12 2242 98 20 0 chr4 74791268 74791574 -127536773 + AluSx SINE Alu 1 312 0 1138 74 0 0 chr4 74791658 74791793 -127536554 + AluSq/x SINE Alu 1 135 -178 1878 126 3 63 chr4 74791793 74792110 -127536237 + AluSx SINE Alu 1 298 -14 2192 112 7 0 chr4 74793002 74793296 -127535051 + AluSx SINE Alu 1 296 -16 2347 134 39 24 chr4 74793522 74793933 -127534414 + L1MC1 LINE L1 5916 6332 -1 269 217 32 4 chr4 74794447 74794521 -127533826 - MIR SINE MIR -37 171 90 1065 193 166 23 chr4 74795849 74796108 -127532239 - AluSg SINE Alu 0 300 5 2111 127 0 38 chr4 74796119 74796435 -127531912 - AluSx SINE Alu -8 304 1 2220 69 19 53 chr4 74797036 74797354 -127530993 + AluSg SINE Alu 1 307 -3 30 27 0 0 chr4 74798692 74798729 -127529618 + GC_rich Low_complexity Low_complexity 1 37 0 252 237 0 0 chr4 74799845 74799883 -127528464 + A-rich Low_complexity Low_complexity 1 38 0 2183 98 3 17 chr4 74799890 74800186 -127528161 + AluSx SINE Alu 1 292 -20 1026 88 7 14 chr4 74800281 74800429 -127527918 + L1PA10 LINE L1 6019 6165 -3 2239 104 7 23 chr4 74800547 74800854 -127527493 - AluSg1 SINE Alu -7 302 1 239 269 19 56 chr4 74800915 74801023 -127527324 + MIR3 SINE MIR 90 193 -15 3855 62 18 57 chr4 74801538 74802099 -127526248 + L1PA8 LINE L1 5633 6171 -1 203 182 0 0 chr4 74802105 74802138 -127526209 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 764 191 0 14 chr4 74802147 74802288 -127526059 + FLAM_C SINE Alu 2 140 -3 2106 121 7 0 chr4 74802470 74802768 -127525579 + AluSx SINE Alu 13 312 0 2188 123 0 0 chr4 74802782 74803092 -127525255 + AluSx SINE Alu 3 312 0 2319 78 0 7 chr4 74803184 74803505 -127524842 + AluSp SINE Alu 2 320 0 219 227 0 0 chr4 74803648 74803692 -127524655 - L2 LINE L2 0 3313 3270 2167 110 3 17 chr4 74803838 74804137 -127524210 - AluSx SINE Alu -17 295 1 1167 204 123 0 chr4 74804455 74804715 -127523632 + AluJb SINE Alu 1 292 -10 1851 135 0 4 chr4 74806367 74806633 -127521714 - AluSg SINE Alu -1 309 45 2300 107 0 0 chr4 74806749 74807040 -127521307 + AluSq SINE Alu 1 291 -22 420 250 65 24 chr4 74807325 74807449 -127520898 - L2 LINE L2 -2 3311 3183 2545 47 3 28 chr4 74807542 74807861 -127520486 - AluY SINE Alu 0 311 1 1170 130 6 0 chr4 74808179 74808356 -127519991 - AluSg/x SINE Alu -1 311 134 2444 70 0 3 chr4 74808356 74808658 -127519689 - AluSg SINE Alu -9 301 1 332 284 175 36 chr4 74809039 74809233 -127519114 - MIR SINE MIR -6 256 36 698 200 0 22 chr4 74809252 74809387 -127518960 + FLAM_C SINE Alu 1 132 -11 1974 131 50 0 chr4 74809522 74809819 -127518528 + AluSx SINE Alu 1 312 0 2048 132 0 14 chr4 74810012 74810307 -127518040 + AluSx SINE Alu 1 291 -21 2283 105 3 0 chr4 74810625 74810931 -127517416 + AluSx SINE Alu 1 307 -5 2288 113 0 7 chr4 74811036 74811346 -127517001 - AluSx SINE Alu -4 308 1 749 176 7 22 chr4 74811372 74811497 -127516850 + AluJb SINE Alu 1 125 -187 833 76 0 8 chr4 74811497 74811616 -127516731 + (GGAA)n Simple_repeat Simple_repeat 3 120 0 1986 206 104 15 chr4 74811676 74812138 -127516209 - MLT1D LTR MaLR -2 503 1 2045 152 13 3 chr4 74812322 74812625 -127515722 + AluSp SINE Alu 1 306 -7 462 265 0 0 chr4 74812691 74812789 -127515558 - AluSx SINE Alu -4 305 208 1562 127 0 0 chr4 74813411 74813632 -127514715 - AluSx SINE Alu -91 221 1 2357 115 0 3 chr4 74813748 74814062 -127514285 + AluSq SINE Alu 1 313 0 243 61 0 0 chr4 74814764 74814797 -127513550 + (TG)n Simple_repeat Simple_repeat 2 34 0 395 362 55 34 chr4 74814887 74815060 -127513287 + MIR SINE MIR 20 201 -61 2580 65 0 3 chr4 74815060 74815369 -127512978 - AluY SINE Alu -3 308 1 395 362 55 34 chr4 74815369 74815430 -127512917 + MIR SINE MIR 201 259 -3 2056 102 49 0 chr4 74815916 74816201 -127512146 - AluSp SINE Alu -14 299 1 204 273 65 26 chr4 74817011 74817088 -127511259 + L2 LINE L2 3180 3259 -13 198 0 0 0 chr4 74817088 74817110 -127511237 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 1094 172 116 0 chr4 74817260 74817458 -127510889 - AluJb SINE Alu -14 298 78 1598 118 0 0 chr4 74817458 74817670 -127510677 - AluSx SINE Alu -100 212 1 414 0 0 0 chr4 74818075 74818121 -127510226 + (TG)n Simple_repeat Simple_repeat 2 47 0 2231 83 59 0 chr4 74818218 74818507 -127509840 + AluSg1 SINE Alu 1 306 -3 276 53 0 0 chr4 74819701 74819739 -127508608 + (TG)n Simple_repeat Simple_repeat 2 39 0 28 29 0 0 chr4 74821308 74821343 -127507004 + AT_rich Low_complexity Low_complexity 1 35 0 2379 98 0 0 chr4 74822520 74822817 -127505530 - AluSp SINE Alu -16 297 1 317 365 125 28 chr4 74823070 74823503 -127504844 - L2 LINE L2 -467 2847 2373 2203 75 13 36 chr4 74823551 74823858 -127504489 - AluSp SINE Alu -13 300 1 198 103 0 0 chr4 74824217 74824246 -127504101 + (T)n Simple_repeat Simple_repeat 1 29 0 2191 90 0 0 chr4 74824541 74824819 -127503528 - AluSx SINE Alu -11 301 24 1450 53 0 0 chr4 74824819 74824989 -127503358 + AluSq SINE Alu 129 298 -15 2224 148 4 82 chr4 74825244 74825697 -127502650 - MER47B DNA MER2_type 0 418 1 567 275 47 52 chr4 74826323 74826444 -127501903 + MIR SINE MIR 1 122 -140 2155 129 0 3 chr4 74826444 74826738 -127501609 - AluSx SINE Alu -13 299 7 567 275 47 52 chr4 74826738 74826827 -127501520 + MIR SINE MIR 122 210 -52 188 108 0 27 chr4 74826919 74826956 -127501391 + (TTTTTA)n Simple_repeat Simple_repeat 6 41 0 2102 126 40 0 chr4 74827108 74827409 -127500938 - AluSq SINE Alu 0 313 1 460 242 118 45 chr4 74827520 74827643 -127500704 - MIR SINE MIR -26 236 95 2082 81 39 59 chr4 74827643 74827950 -127500397 + AluSq SINE Alu 1 301 -12 460 242 118 45 chr4 74827950 74828004 -127500343 - MIR SINE MIR -167 95 46 437 296 123 19 chr4 74828134 74828227 -127500120 - Tigger8 DNA MER2_type -222 444 362 2261 88 14 3 chr4 74828227 74828524 -127499823 - AluSq SINE Alu -13 300 1 437 296 123 19 chr4 74828524 74828752 -127499595 - Tigger8 DNA MER2_type -304 362 76 2092 143 3 0 chr4 74828752 74829053 -127499294 - AluSx SINE Alu -10 302 1 437 296 123 19 chr4 74829053 74829105 -127499242 - Tigger8 DNA MER2_type -590 76 31 3714 70 4 4 chr4 74829617 74830106 -127498241 + L1PA6 LINE L1 5666 6154 0 1117 123 0 0 chr4 74830106 74830256 -127498091 + AluSg/x SINE Alu 136 286 -22 730 81 18 0 chr4 74830256 74830367 -127497980 + (GA)n Simple_repeat Simple_repeat 2 114 0 453 296 81 32 chr4 74830527 74830835 -127497512 + L1ME4a LINE L1 5483 5805 -316 456 208 58 13 chr4 74830930 74831084 -127497263 + L1ME4a LINE L1 5948 6108 -13 1783 142 6 72 chr4 74832746 74832893 -127495454 + AluJb SINE Alu 1 115 -197 2230 110 0 3 chr4 74832893 74833184 -127495163 + AluSq SINE Alu 2 291 -22 1783 142 6 72 chr4 74833184 74833367 -127494980 + AluJb SINE Alu 115 309 -3 377 267 64 74 chr4 74833429 74833750 -127494597 - L1ME4a LINE L1 -12 6109 5786 186 43 0 0 chr4 74833750 74833773 -127494574 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2207 109 0 0 chr4 74833775 74834059 -127494288 - AluSq SINE Alu -29 284 1 377 267 64 74 chr4 74834059 74834124 -127494223 - L1ME4a LINE L1 -336 5785 5724 2197 118 14 0 chr4 74834864 74835160 -127493187 - AluSx SINE Alu -12 300 1 1875 150 0 20 chr4 74835170 74835476 -127492871 - AluJb SINE Alu -12 300 1 2376 88 0 0 chr4 74835544 74835849 -127492498 - AluY SINE Alu -6 305 1 755 167 43 0 chr4 74835916 74836092 -127492255 - AluJo SINE Alu 0 350 169 609 176 9 0 chr4 74836094 74836202 -127492145 - AluJo SINE Alu -203 109 1 1226 126 0 0 chr4 74837015 74837197 -127491150 + AluSg/x SINE Alu 118 299 -11 797 204 51 10 chr4 74838020 74838216 -127490131 + MER46C DNA MER2_type 21 224 -114 2054 143 0 10 chr4 74840239 74840559 -127487788 - AluSx SINE Alu 0 317 1 1652 136 85 15 chr4 74841367 74841546 -127486801 - AluJo SINE Alu 0 312 107 234 0 0 0 chr4 74841546 74841572 -127486775 + (TATG)n Simple_repeat Simple_repeat 3 28 0 1652 136 85 15 chr4 74841572 74841688 -127486659 - AluJo SINE Alu -205 107 1 2297 113 0 0 chr4 74841842 74842142 -127486205 - AluSq SINE Alu -13 300 1 1846 110 39 18 chr4 74842150 74842431 -127485916 - AluSc SINE Alu -22 287 1 1297 149 181 8 chr4 74842999 74843247 -127485100 + AluSg1 SINE Alu 9 299 -10 2112 108 14 3 chr4 74843249 74843545 -127484802 + AluSx SINE Alu 1 299 -13 989 183 12 0 chr4 74843548 74843712 -127484635 + AluJo/FRAM SINE Alu 137 302 -10 462 209 132 149 chr4 74843762 74843886 -127484461 - MIR SINE MIR -25 237 117 2250 167 14 9 chr4 74843886 74844317 -127484030 + L1MD1 LINE L1 5798 6230 -12 462 209 132 149 chr4 74844317 74844427 -127483920 - MIR SINE MIR -145 117 7 351 190 17 43 chr4 74844433 74844619 -127483728 + MER112 DNA MER1_type 9 253 -7 281 317 112 66 chr4 74844730 74844920 -127483427 + L2 LINE L2 2102 2282 -1032 722 180 0 8 chr4 74844920 74845042 -127483305 + FLAM_A SINE Alu 1 121 -12 281 317 112 66 chr4 74845042 74845217 -127483130 + L2 LINE L2 2282 2484 -830 1214 203 25 19 chr4 74845706 74846123 -127482224 - LTR40c LTR ERVL 0 465 1 231 36 0 0 chr4 74846250 74846278 -127482069 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 1695 170 22 22 chr4 74846831 74847143 -127481204 - AluJb SINE Alu 0 312 1 767 160 11 99 chr4 74847188 74847369 -127480978 - FRAM SINE Alu -16 160 1 404 261 98 7 chr4 74847388 74847541 -127480806 - L1MC5 LINE L1 -70 7891 7725 3340 168 86 63 chr4 74847698 74848260 -127480087 - L1MB7 LINE L1 0 6184 5636 1203 116 66 0 chr4 74848260 74848458 -127479889 - L1PA16 LINE L1 -9 6157 5947 3340 168 86 63 chr4 74848458 74849129 -127479218 - L1MB7 LINE L1 -548 5636 4901 1100 96 0 0 chr4 74849132 74849268 -127479079 - AluSq/x SINE Alu -176 136 1 4670 216 42 11 chr4 74849269 74850605 -127477742 - L1MB7 LINE L1 -1651 4495 3118 255 315 192 14 chr4 74850707 74850853 -127477494 - MER5A DNA MER1_type 0 189 18 419 247 0 22 chr4 74851031 74851120 -127477227 - MIR3 SINE MIR -52 156 70 2213 109 0 13 chr4 74851237 74851540 -127476807 - AluSq SINE Alu -14 299 1 23 0 0 0 chr4 74851708 74851731 -127476616 + AT_rich Low_complexity Low_complexity 1 23 0 1888 141 30 3 chr4 74852085 74852382 -127475965 - AluSx SINE Alu -7 305 1 2379 101 0 0 chr4 74852857 74853164 -127475183 + AluY SINE Alu 1 307 -4 21 0 0 0 chr4 74854155 74854176 -127474171 + AT_rich Low_complexity Low_complexity 1 21 0 1778 175 3 23 chr4 74854176 74854484 -127473863 + AluJb SINE Alu 1 302 -10 2242 103 3 13 chr4 74854510 74854821 -127473526 + AluSq SINE Alu 1 308 -5 366 281 42 0 chr4 74854946 74855042 -127473305 + L2 LINE L2 3198 3297 -16 287 268 26 33 chr4 74855216 74855369 -127472978 - L1ME3A LINE L1 0 6170 6019 668 185 0 0 chr4 74855536 74855644 -127472703 + FLAM_C SINE Alu 1 108 -35 4765 119 40 18 chr4 74855750 74855945 -127472402 - L1MA5 LINE L1 -5 6295 6106 2333 75 10 3 chr4 74855945 74856240 -127472107 + AluY SINE Alu 2 298 -13 4765 119 40 18 chr4 74856240 74856544 -127471803 - L1MA5 LINE L1 -194 6106 5810 384 22 0 0 chr4 74856544 74856589 -127471758 + (TG)n Simple_repeat Simple_repeat 2 46 0 4765 119 40 18 chr4 74856589 74856910 -127471437 - L1MA5 LINE L1 -490 5810 5456 601 242 27 64 chr4 74856989 74857208 -127471139 + MER20 DNA MER1_type 2 212 -7 203 321 130 15 chr4 74858374 74858505 -127469842 + MIR SINE MIR 6 151 -111 240 254 18 0 chr4 74858630 74858685 -127469662 - MIR SINE MIR -88 120 65 347 243 66 22 chr4 74858698 74858834 -127469513 + MIR SINE MIR 109 250 -12 251 265 86 0 chr4 74859087 74859204 -127469143 - L2 LINE L2 -633 2681 2555 1972 166 3 0 chr4 74859221 74859522 -127468825 + AluJo SINE Alu 1 302 -10 568 182 8 8 chr4 74859525 74859646 -127468701 - Charlie1 DNA MER1_type -1124 1637 1517 597 269 26 47 chr4 74860072 74860265 -127468082 - MIR3 SINE MIR -10 198 10 232 270 95 0 chr4 74860246 74860309 -127468038 + L2 LINE L2 3139 3207 -65 * 198 158 0 140 chr4 74860789 74860846 -127467501 - L2 LINE L2 -335 2978 2930 1996 152 0 7 chr4 74862091 74862393 -127465954 + AluSx SINE Alu 1 300 -12 657 245 23 32 chr4 74862490 74862706 -127465641 + L1ME3A LINE L1 5905 6118 -52 2279 66 0 24 chr4 74862946 74863235 -127465112 - AluSc SINE Alu -14 295 14 2057 128 7 0 chr4 74863433 74863729 -127464618 - AluSx SINE Alu -11 301 4 3651 136 53 50 chr4 74863754 74864274 -127464073 - L1MC1 LINE L1 -4 6329 5805 2217 75 3 78 chr4 74864274 74864596 -127463751 - AluSp SINE Alu -14 299 2 3651 136 53 50 chr4 74864596 74864788 -127463559 - L1MC1 LINE L1 -528 5805 5615 2469 75 0 0 chr4 74864873 74865166 -127463181 - AluSx SINE Alu -19 293 1 825 170 0 0 chr4 74865187 74865322 -127463025 - FLAM_C SINE Alu -8 135 1 22 35 0 0 chr4 74865483 74865512 -127462835 + AT_rich Low_complexity Low_complexity 1 29 0 276 186 0 0 chr4 74866079 74866138 -127462209 + (CA)n Simple_repeat Simple_repeat 2 60 0 3150 109 15 55 chr4 74866138 74866260 -127462087 - Tigger1 DNA MER2_type 0 2418 2293 1581 128 139 15 chr4 74866260 74866526 -127461821 + AluJb SINE Alu 1 299 -13 3150 109 15 55 chr4 74866526 74866945 -127461402 - Tigger1 DNA MER2_type -125 2293 1899 * 7472 121 26 19 chr4 74866936 74866998 -127461349 - Tigger1 DNA MER2_type -1156 1262 1202 2014 161 3 0 chr4 74866998 74867309 -127461038 - AluSx SINE Alu 0 312 1 7472 121 26 19 chr4 74867309 74868489 -127459858 - Tigger1 DNA MER2_type -1216 1202 10 192 77 0 0 chr4 74868489 74868515 -127459832 + (TG)n Simple_repeat Simple_repeat 2 27 0 1562 143 21 107 chr4 74868530 74868720 -127459627 - Tigger2 DNA MER2_type 0 2718 2582 1799 179 14 0 chr4 74868720 74869017 -127459330 - AluJb SINE Alu -11 301 1 1562 143 21 107 chr4 74869017 74869247 -127459100 - Tigger2 DNA MER2_type -136 2582 2334 233 179 0 0 chr4 74869264 74869303 -127459044 + Alu SINE Alu 254 292 -10 29 0 0 0 chr4 74869303 74869332 -127459015 + AT_rich Low_complexity Low_complexity 1 29 0 319 192 0 0 chr4 74869345 74869397 -127458950 + MER8 DNA MER2_type 188 239 0 284 273 26 0 chr4 74869399 74869476 -127458871 + MER2 DNA MER2_type 1 79 -266 410 290 33 15 chr4 74869543 74869727 -127458620 + MIR SINE MIR 2 256 -6 2499 89 0 0 chr4 74869835 74870148 -127458199 - AluSp SINE Alu 0 313 1 399 266 32 6 chr4 74870203 74870361 -127457986 + L1ME4a LINE L1 5944 6105 -16 406 200 30 10 chr4 74871127 74871227 -127457120 + L1MD3 LINE L1 7874 7975 -20 2297 101 3 22 chr4 74871514 74871832 -127456515 + AluSx SINE Alu 1 312 0 243 0 0 0 chr4 74871832 74871859 -127456488 + (TA)n Simple_repeat Simple_repeat 2 28 0 244 245 57 0 chr4 74872515 74872568 -127455779 - L2 LINE L2 -9 3263 3208 25 65 0 0 chr4 74872616 74872662 -127455685 + AT_rich Low_complexity Low_complexity 1 46 0 1544 188 30 16 chr4 74872852 74873155 -127455192 + AluJo SINE Alu 3 309 -3 1436 142 25 33 chr4 74873275 74873549 -127454798 - MER44D DNA MER2_type 0 705 434 2210 71 0 7 chr4 74873680 74873987 -127454360 + AluY SINE Alu 1 305 0 552 216 0 0 chr4 74874356 74874453 -127453894 - MER44D DNA MER2_type -242 367 1 447 294 72 7 chr4 74874844 74874997 -127453350 + MIR SINE MIR 100 262 0 1962 147 0 10 chr4 74875137 74875450 -127452897 + AluSx SINE Alu 1 310 -2 2489 71 3 3 chr4 74875758 74876067 -127452280 - AluSp SINE Alu -4 309 1 275 274 71 80 chr4 74876370 74876596 -127451751 + MIR SINE MIR 1 224 -38 1682 185 44 0 chr4 74876762 74877060 -127451287 - AluSx SINE Alu -1 311 1 23 0 0 0 chr4 74877250 74877273 -127451074 + AT_rich Low_complexity Low_complexity 1 23 0 838 255 19 49 chr4 74877374 74877453 -127450894 + MIR SINE MIR 2 82 -180 1908 135 11 0 chr4 74877453 74877780 -127450567 - AluSx SINE Alu 0 330 1 838 255 19 49 chr4 74877780 74877966 -127450381 + MIR SINE MIR 82 260 -2 767 168 8 0 chr4 74878155 74878286 -127450061 + FLAM_C SINE Alu 1 132 -1 1626 170 22 0 chr4 74878390 74878690 -127449657 + AluJb SINE Alu 1 306 0 22 0 0 0 chr4 74879361 74879383 -127448964 + AT_rich Low_complexity Low_complexity 1 22 0 2209 83 33 20 chr4 74879470 74879770 -127448577 - AluSc SINE Alu -5 304 1 2088 144 3 0 chr4 74879818 74880116 -127448231 + AluSx SINE Alu 1 299 -13 26 50 0 0 chr4 74880232 74880272 -127448075 + AT_rich Low_complexity Low_complexity 1 40 0 2456 70 3 0 chr4 74881389 74881689 -127446658 + AluSx SINE Alu 1 301 -11 3574 141 40 26 chr4 74882576 74882734 -127445613 + L1MA6 LINE L1 5442 5596 -704 2106 118 3 26 chr4 74882734 74883040 -127445307 + AluSx SINE Alu 1 299 -13 3574 141 40 26 chr4 74883040 74883578 -127444769 + L1MA6 LINE L1 5596 6148 -152 545 221 29 0 chr4 74883585 74883725 -127444622 - L1MA4 LINE L1 -2 6298 6155 * 596 179 100 0 chr4 74883724 74883864 -127444483 + L1MA6 LINE L1 6134 6287 -13 1745 149 61 3 chr4 74884089 74884375 -127443972 + AluJo SINE Alu 1 306 -6 243 0 0 0 chr4 74884375 74884402 -127443945 + (TA)n Simple_repeat Simple_repeat 1 27 0 2264 106 3 19 chr4 74884436 74884748 -127443599 - AluSg SINE Alu -3 307 1 2288 88 3 3 chr4 74885192 74885488 -127442859 + AluSg SINE Alu 1 296 -14 25 31 0 0 chr4 74885810 74885842 -127442505 + AT_rich Low_complexity Low_complexity 1 32 0 352 325 86 38 chr4 74887700 74887992 -127440355 + L2 LINE L2 3008 3313 0 445 267 85 73 chr4 74891348 74891486 -127436861 - MIR SINE MIR 0 262 118 2116 125 3 0 chr4 74891486 74891774 -127436573 + AluSx SINE Alu 1 289 -23 445 267 85 73 chr4 74891774 74891882 -127436465 - MIR SINE MIR -144 118 13 26 30 0 0 chr4 74892399 74892432 -127435915 + AT_rich Low_complexity Low_complexity 1 33 0 8024 108 14 41 chr4 74892786 74893233 -127435114 - HSMAR2 DNA Mariner 0 1302 844 686 208 65 42 chr4 74893233 74893401 -127434946 + FAM SINE Alu 1 172 -3 8024 108 14 41 chr4 74893401 74894119 -127434228 - HSMAR2 DNA Mariner -458 844 175 1960 167 6 6 chr4 74894119 74894430 -127433917 - AluJb SINE Alu -1 311 1 8024 108 14 41 chr4 74894430 74894599 -127433748 - HSMAR2 DNA Mariner -1127 175 3 2331 104 0 0 chr4 74894750 74895058 -127433289 + AluSg SINE Alu 1 308 -2 1942 146 0 7 chr4 74895282 74895577 -127432770 + AluJo SINE Alu 11 303 -9 1448 153 32 80 chr4 74895697 74896011 -127432336 + AluSx SINE Alu 2 300 -12 2235 95 20 0 chr4 74896056 74896362 -127431985 + AluSx SINE Alu 1 312 0 1097 82 0 0 chr4 74896445 74896580 -127431767 + AluSq/x SINE Alu 1 135 -178 1861 126 3 63 chr4 74896580 74896897 -127431450 + AluSx SINE Alu 1 298 -14 2174 112 7 0 chr4 74897789 74898083 -127430264 + AluSx SINE Alu 1 296 -16 2262 134 39 24 chr4 74898309 74898720 -127429627 + L1MC1 LINE L1 5916 6332 -1 285 230 108 14 chr4 74899234 74899308 -127429039 - MIR3 SINE MIR -37 171 91 1053 193 166 23 chr4 74900636 74900895 -127427452 - AluSg SINE Alu 0 300 5 2101 127 0 38 chr4 74900906 74901222 -127427125 - AluSx SINE Alu -8 304 1 2060 69 21 52 chr4 74901823 74902140 -127426207 + AluSg SINE Alu 1 308 0 321 292 125 0 chr4 74902179 74902275 -127426072 - L2 LINE L2 -13 3300 3193 251 290 84 9 chr4 74902285 74902392 -127425955 - MIR SINE MIR -120 142 28 285 295 62 36 chr4 74902547 74902659 -127425688 + L2 LINE L2 3158 3272 0 23 0 0 0 chr4 74902739 74902762 -127425585 + AT_rich Low_complexity Low_complexity 1 23 0 203 300 20 0 chr4 74903554 74903604 -127424743 + L2 LINE L2 3208 3258 -14 1255 199 88 11 chr4 74904715 74904987 -127423360 - AluJb SINE Alu -19 293 1 1060 198 61 61 chr4 74905115 74905459 -127422888 + MER2 DNA MER2_type 1 344 0 22 35 0 0 chr4 74905975 74906004 -127422343 + AT_rich Low_complexity Low_complexity 1 29 0 1954 104 9 98 chr4 74906094 74906422 -127421925 + AluSq SINE Alu 1 299 -14 318 122 0 0 chr4 74906646 74906695 -127421652 + Alu SINE Alu 3 51 -251 4067 165 81 61 chr4 74906710 74907266 -127421081 + L1MB3 LINE L1 4518 5062 -1121 1958 121 0 0 chr4 74907266 74907539 -127420808 + AluSx SINE Alu 1 273 -39 4067 165 81 61 chr4 74907539 74908623 -127419724 + L1MB3 LINE L1 5062 6183 0 1869 178 186 116 chr4 74908645 74909108 -127419239 + L1MC3 LINE L1 6595 7024 -761 308 231 26 13 chr4 74909108 74909186 -127419161 + MLT1F1 LTR MaLR 46 124 -443 1869 178 186 116 chr4 74909186 74909433 -127418914 + L1MC3 LINE L1 7024 7252 -533 497 170 30 0 chr4 74909433 74909533 -127418814 + U13 snRNA snRNA 1 103 -1 1869 178 186 116 chr4 74909533 74909826 -127418521 + L1MC3 LINE L1 7252 7748 -37 2271 102 0 3 chr4 74909826 74910119 -127418228 - AluSg SINE Alu -16 294 3 1869 178 186 116 chr4 74910119 74910160 -127418187 + L1MC3 LINE L1 7748 7785 0 2027 144 21 0 chr4 74910804 74911095 -127417252 + AluSx SINE Alu 1 297 -15 1592 181 15 0 chr4 74911409 74911679 -127416668 - AluJb SINE Alu -38 274 1 2254 107 13 0 chr4 74911852 74912151 -127416196 - AluSx SINE Alu -9 303 1 265 200 121 29 chr4 74912537 74912677 -127415670 + L1MC5 LINE L1 5288 7532 -429 * 509 276 118 57 chr4 74912608 74913116 -127415231 + L1PB1 LINE L1 5288 5826 -325 * 1739 213 122 43 chr4 74912662 74913320 -127415027 + L1ME2 LINE L1 5338 6047 -117 1208 114 17 6 chr4 74913384 74913560 -127414787 + AluSg/x SINE Alu 129 306 -4 2043 143 13 3 chr4 74913629 74913936 -127414411 + AluSx SINE Alu 1 310 -2 871 216 18 0 chr4 74914404 74914575 -127413772 - AluJb SINE Alu -17 295 122 1850 150 102 18 chr4 74914627 74915020 -127413327 + L1MC/D LINE L1 5290 5715 -618 1652 139 12 16 chr4 74915218 74915469 -127412878 - AluSx SINE Alu -8 304 55 2241 102 13 0 chr4 74918332 74918636 -127409711 + AluSp SINE Alu 1 308 -5 1256 115 0 0 chr4 74918636 74918810 -127409537 + AluSg/x SINE Alu 126 299 -13 2092 140 3 10 chr4 74918849 74919163 -127409184 - AluSx SINE Alu 0 312 1 2281 126 0 0 chr4 74919488 74919798 -127408549 + AluSq SINE Alu 1 310 -3 1971 136 3 20 chr4 74919996 74920298 -127408049 + AluSq SINE Alu 1 297 -16 2489 83 0 3 chr4 74920301 74920615 -127407732 + AluSp SINE Alu 1 313 0 1801 171 13 13 chr4 74920776 74921081 -127407266 + AluJo SINE Alu 2 306 -6 2280 96 24 0 chr4 74921164 74921457 -127406890 - AluSx SINE Alu -12 300 1 1984 128 10 10 chr4 74921687 74921991 -127406356 + AluSx SINE Alu 1 304 -8 1752 154 4 0 chr4 74922008 74922275 -127406072 + AluSq SINE Alu 1 268 -45 23 0 0 0 chr4 74922314 74922337 -127406010 + AT_rich Low_complexity Low_complexity 1 23 0 2082 125 0 0 chr4 74922840 74923127 -127405220 + AluSx SINE Alu 4 290 -22 1927 156 0 26 chr4 74923745 74924047 -127404300 + AluJo SINE Alu 1 294 -18 2160 103 3 0 chr4 74924196 74924488 -127403859 + AluSq SINE Alu 4 296 -17 2039 118 28 3 chr4 74924690 74924978 -127403369 + AluSx SINE Alu 1 295 -17 1702 137 0 70 chr4 74925762 74925924 -127402423 - AluJb SINE Alu -19 293 162 2419 96 0 3 chr4 74925924 74926226 -127402121 - AluSq SINE Alu -12 301 1 1702 137 0 70 chr4 74926226 74926377 -127401970 - AluJb SINE Alu -150 162 2 912 187 0 106 chr4 74926490 74926561 -127401786 + AluJb SINE Alu 87 164 -148 1801 170 11 0 chr4 74926561 74926843 -127401504 + AluJb SINE Alu 1 285 -27 912 187 0 106 chr4 74926843 74927006 -127401341 + AluJb SINE Alu 164 296 -16 1555 170 9 69 chr4 74927333 74927650 -127400697 + AluJo SINE Alu 1 298 -14 246 218 18 0 chr4 74927663 74927718 -127400629 + L1MC5 LINE L1 7510 7565 -396 1898 150 0 14 chr4 74927729 74928022 -127400325 + AluSx SINE Alu 6 294 -18 257 211 0 19 chr4 74928209 74928261 -127400086 + MER66A LTR ERV1 287 337 -141 2348 75 10 0 chr4 74928263 74928557 -127399790 + AluSq SINE Alu 1 297 -16 271 231 13 26 chr4 74928573 74928651 -127399696 + L1MC5 LINE L1 7837 7913 -48 2150 130 0 13 chr4 74929853 74930153 -127398194 + AluSx SINE Alu 1 296 -16 847 154 23 0 chr4 74930876 74931006 -127397341 - FLAM_C SINE Alu -10 133 1 245 234 0 0 chr4 74931099 74931146 -127397201 + MER66B LTR ERV1 298 344 -142 2140 123 3 7 chr4 74931165 74931467 -127396880 + AluSx SINE Alu 1 301 -11 1725 169 64 36 chr4 74931689 74931811 -127396536 - L1PA15 LINE L1 -2 6163 6046 2294 84 0 14 chr4 74931811 74932108 -127396239 - AluSc SINE Alu -14 295 3 1725 169 64 36 chr4 74932108 74932345 -127396002 - L1PA15 LINE L1 -119 6046 5794 1447 78 68 0 chr4 74932351 74932542 -127395805 + AluY SINE Alu 1 204 -107 24 32 0 0 chr4 74932642 74932673 -127395674 + AT_rich Low_complexity Low_complexity 1 31 0 264 143 0 0 chr4 74932758 74932814 -127395533 + (A)n Simple_repeat Simple_repeat 1 56 0 407 193 0 0 chr4 74932989 74933077 -127395270 - AluJ/FLAM SINE Alu -217 95 8 1844 144 0 40 chr4 74933125 74933424 -127394923 + AluJb SINE Alu 11 297 -15 2418 79 0 10 chr4 74933452 74933757 -127394590 + AluY SINE Alu 1 302 -9 1444 210 14 14 chr4 74933767 74934053 -127394294 + AluJo SINE Alu 2 287 -25 814 178 5 68 chr4 74934065 74934256 -127394091 + MER57-int LTR ERV1 665 843 -6694 277 181 26 52 chr4 74934355 74934441 -127393906 + MER57-int LTR ERV1 2654 2911 -3199 1843 124 55 15 chr4 74934495 74934800 -127393547 - AluSx SINE Alu 0 316 1 466 120 27 13 chr4 74934815 74934890 -127393457 - U6 snRNA snRNA -3 104 29 1763 183 0 29 chr4 74934902 74935214 -127393133 - AluJo SINE Alu -9 303 1 3548 225 35 72 chr4 74935218 74935287 -127393060 + MER57-int LTR ERV1 2702 2772 -2099 1853 128 50 27 chr4 74935287 74935585 -127392762 - AluJb SINE Alu -7 305 1 3548 225 35 72 chr4 74935585 74935655 -127392692 + MER57-int LTR ERV1 2772 2843 -2028 2025 140 0 0 chr4 74935655 74935933 -127392414 + AluSx SINE Alu 1 278 -34 3548 225 35 72 chr4 74935933 74935948 -127392399 + MER57-int LTR ERV1 2843 2857 -2014 2843 109 28 23 chr4 74935948 74936380 -127391967 + MER57B LTR ERV1 1 434 0 3548 225 35 72 chr4 74936380 74936602 -127391745 + MER57-int LTR ERV1 2857 3086 -1785 2318 81 3 16 chr4 74936602 74936909 -127391438 - AluSc SINE Alu -6 303 1 3548 225 35 72 chr4 74936909 74937479 -127390868 + MER57-int LTR ERV1 3086 3594 -1277 1503 144 77 85 chr4 74937479 74937638 -127390709 + MER1B DNA MER1_type 1 160 -2550 2115 124 14 0 chr4 74937638 74937928 -127390419 + AluSx SINE Alu 1 294 -18 1503 144 77 85 chr4 74937928 74938108 -127390239 + MER1B DNA MER1_type 160 337 0 3548 225 35 72 chr4 74938108 74938438 -127389909 + MER57-int LTR ERV1 3594 3935 -936 685 144 0 0 chr4 74938441 74938538 -127389809 + AluS SINE Alu 2 98 -215 1870 97 0 4 chr4 74938538 74938775 -127389572 - AluSq SINE Alu -77 236 1 817 63 0 36 chr4 74938806 74938917 -127389430 + U6 snRNA snRNA 1 107 0 2198 229 35 17 chr4 74938983 74939502 -127388845 + MER57-int LTR ERV1 6635 7162 -375 987 137 83 48 chr4 74939516 74939742 -127388605 + LTR54 LTR ERV1 64 281 -229 1971 152 33 0 chr4 74939742 74940044 -127388303 - AluSx SINE Alu 0 312 1 987 137 83 48 chr4 74940044 74940189 -127388158 + LTR54 LTR ERV1 281 508 -2 321 237 13 0 chr4 74940288 74940364 -127387983 - L2 LINE L2 0 3272 3196 283 81 0 0 chr4 74940406 74940443 -127387904 + Tigger1 DNA MER2_type 1 37 -2381 13514 116 17 41 chr4 74940447 74942615 -127385732 + Tigger1 DNA MER2_type 301 2417 -1 2409 82 3 0 chr4 74942672 74942964 -127385383 + AluSq SINE Alu 1 293 -20 1985 94 54 7 chr4 74943089 74943366 -127384981 - AluY SINE Alu -21 290 1 545 171 36 0 chr4 74943432 74943543 -127384804 - FLAM_C SINE Alu -27 116 2 22 56 0 0 chr4 74943746 74943782 -127384565 + AT_rich Low_complexity Low_complexity 1 36 0 2344 90 0 3 chr4 74944908 74945208 -127383139 + AluSg SINE Alu 1 299 -11 1914 103 18 15 chr4 74945259 74945532 -127382815 - AluSq SINE Alu -6 307 34 2454 38 42 0 chr4 74945575 74945864 -127382483 + AluY SINE Alu 1 301 -10 188 229 0 0 chr4 74945898 74945933 -127382414 + L2 LINE L2 3262 3296 -17 21 0 0 0 chr4 74947177 74947198 -127381149 + GC_rich Low_complexity Low_complexity 1 21 0 206 160 0 40 chr4 74947270 74947320 -127381027 + (CGG)n Simple_repeat Simple_repeat 2 49 0 337 232 0 43 chr4 74947676 74947861 -127380486 + (GGCTG)n Simple_repeat Simple_repeat 1 177 0 848 144 8 0 chr4 74947976 74948101 -127380246 + AluSq/x SINE Alu 8 133 -180 2264 99 0 3 chr4 74948105 74948408 -127379939 + AluSx SINE Alu 1 302 -10 1804 142 45 3 chr4 74948639 74948927 -127379420 + AluJo SINE Alu 1 300 -12 800 226 0 7 chr4 74950079 74950234 -127378113 - AluJb SINE Alu -30 282 129 693 160 20 160 chr4 74950463 74950707 -127377640 + AluJb SINE Alu 86 295 -17 1898 138 184 72 chr4 74950707 74951110 -127377237 + LTR54 LTR ERV1 4 361 -149 2491 60 10 0 chr4 74951110 74951410 -127376937 + AluSp SINE Alu 1 303 -10 1898 138 184 72 chr4 74951410 74951421 -127376926 + LTR54 LTR ERV1 361 369 -141 2394 91 3 0 chr4 74951421 74951717 -127376630 + AluSx SINE Alu 4 300 -12 1898 138 184 72 chr4 74951717 74951757 -127376590 + LTR54 LTR ERV1 369 510 0 464 234 21 64 chr4 74951773 74951914 -127376433 + LTR49-int LTR ERV1 1917 2051 -4280 1113 144 111 0 chr4 74952035 74952215 -127376132 + AluSg SINE Alu 1 200 -110 205 115 19 19 chr4 74952218 74952270 -127376077 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 694 181 29 22 chr4 74952273 74952411 -127375936 - FAM SINE Alu -26 159 21 658 209 19 19 chr4 74952555 74952713 -127375634 + LTR49-int LTR ERV1 333 490 -7047 2087 116 10 13 chr4 74952901 74953204 -127375143 - AluSx SINE Alu -10 302 1 442 193 22 166 chr4 74953224 74953268 -127375079 + LTR49-int LTR ERV1 464 513 -5818 2056 83 93 4 chr4 74953268 74953546 -127374801 - AluSx SINE Alu -9 303 1 442 193 22 166 chr4 74953546 74953682 -127374665 + LTR49-int LTR ERV1 513 2558 -3773 2233 103 7 0 chr4 74953732 74954032 -127374315 - AluSx SINE Alu -10 302 1 220 268 52 41 chr4 74954144 74954241 -127374106 - L2 LINE L2 -710 2604 2507 314 333 71 0 chr4 74954402 74954543 -127373804 - L2 LINE L2 -1051 2263 2113 1969 144 7 0 chr4 74954556 74954840 -127373507 + AluJb SINE Alu 1 286 -26 2171 95 34 3 chr4 74954859 74955153 -127373194 + AluSq SINE Alu 1 303 -10 1981 125 7 3 chr4 74957035 74957323 -127371024 - AluSx SINE Alu -23 289 1 2382 93 0 3 chr4 74957722 74958024 -127370323 + AluSc SINE Alu 1 301 -8 377 277 22 29 chr4 74958109 74958246 -127370101 + MIR SINE MIR 29 164 -98 2252 128 0 3 chr4 74958614 74958920 -127369427 + AluSq SINE Alu 1 305 -8 272 261 54 0 chr4 74959190 74959282 -127369065 - L2 LINE L2 -284 2988 2892 1877 168 7 0 chr4 74959474 74959777 -127368570 + AluJo SINE Alu 2 306 -6 282 376 38 0 chr4 74960100 74960233 -127368114 - L3 LINE CR1 -3 1574 1437 195 175 75 0 chr4 74960847 74960887 -127367460 + MER5B DNA MER1_type 136 178 0 1582 74 0 10 chr4 74961212 74961414 -127366933 + AluSg/x SINE Alu 97 296 -14 1990 105 43 0 chr4 74961791 74962067 -127366280 + AluY SINE Alu 1 288 -23 186 306 94 0 chr4 74962442 74962527 -127365820 - MIR SINE MIR -10 252 160 1689 150 34 34 chr4 74962532 74962825 -127365522 + AluJo SINE Alu 5 297 -15 843 139 0 0 chr4 74963006 74963121 -127365226 + AluSg/x SINE Alu 179 293 -19 2322 105 0 9 chr4 74963208 74963523 -127364824 - AluSx SINE Alu 0 312 1 2439 83 0 10 chr4 74963531 74963844 -127364503 - AluSp SINE Alu -3 310 1 1891 149 3 36 chr4 74964051 74964359 -127363988 + AluSx SINE Alu 1 298 -14 2129 114 0 13 chr4 74964521 74964827 -127363520 - AluSg SINE Alu -8 302 1 1731 174 17 3 chr4 74964826 74964846 -127363501 - AluSq SINE Alu -11 302 284 * 423 0 0 0 chr4 74964846 74964893 -127363454 + (TG)n Simple_repeat Simple_repeat 1 47 0 1731 174 17 3 chr4 74964893 74965170 -127363177 - AluSq SINE Alu -29 284 1 25 0 0 0 chr4 74965319 74965344 -127363003 + AT_rich Low_complexity Low_complexity 1 25 0 1639 173 49 3 chr4 74965462 74965746 -127362601 + AluSx SINE Alu 3 299 -13 4741 214 20 41 chr4 74965747 74966401 -127361946 - ERVL LTR ERVL -369 5395 4729 878 181 0 8 chr4 74966401 74966579 -127361768 - FLAM_C SINE Alu 0 133 1 4741 214 20 41 chr4 74966579 74966812 -127361535 - ERVL LTR ERVL -1035 4729 4533 2328 112 0 3 chr4 74966812 74967125 -127361222 + AluSx SINE Alu 1 312 0 4741 214 20 41 chr4 74967125 74967322 -127361025 - ERVL LTR ERVL -1231 4533 4333 1804 199 97 32 chr4 74967365 74967632 -127360715 - MLT2F LTR ERVL -203 460 153 2015 127 10 3 chr4 74967632 74967931 -127360416 - AluSx SINE Alu -11 301 1 1804 199 97 32 chr4 74967931 74968095 -127360252 - MLT2F LTR ERVL -510 153 1 403 297 41 41 chr4 74968095 74968290 -127360057 - L2 LINE L2 -170 3143 2949 452 256 0 50 chr4 74968291 74968412 -127359935 + MIR SINE MIR 112 226 -36 1825 128 21 24 chr4 74968431 74968565 -127359782 + AluJo SINE Alu 5 138 -174 2212 101 17 0 chr4 74968565 74968853 -127359494 + AluSg SINE Alu 1 293 -17 1825 128 21 24 chr4 74968853 74969007 -127359340 + AluJo SINE Alu 138 292 -20 2033 112 14 0 chr4 74969015 74969315 -127359032 + AluSg SINE Alu 1 304 0 370 264 95 20 chr4 74969659 74969807 -127358540 + L1MC4 LINE L1 7348 7506 -536 274 303 86 20 chr4 74969776 74969974 -127358373 + L1MC5 LINE L1 7303 7513 -448 * 268 290 102 11 chr4 74970618 74970794 -127357553 + L1MC5 LINE L1 7611 7802 -159 2288 116 0 6 chr4 74971030 74971341 -127357006 + AluSx SINE Alu 3 311 -1 877 145 48 7 chr4 74971429 74971574 -127356773 + AluSg SINE Alu 1 151 -159 2158 118 0 0 chr4 74971618 74971906 -127356441 - AluSg SINE Alu -22 288 1 1721 172 13 3 chr4 74972141 74972444 -127355903 + AluSx SINE Alu 1 306 -6 2076 135 3 3 chr4 74972614 74972911 -127355436 - AluSx SINE Alu -15 297 1 2405 155 34 55 chr4 74972919 74973312 -127355035 + MSTB1 LTR MaLR 1 387 -45 2204 71 4 4 chr4 74973312 74973621 -127354726 + AluY SINE Alu 3 311 0 2405 155 34 55 chr4 74973621 74973665 -127354682 + MSTB1 LTR MaLR 387 430 -2 343 360 70 0 chr4 74973833 74974005 -127354342 - MIR SINE MIR -78 184 1 1766 174 20 0 chr4 74974079 74974378 -127353969 - AluJb SINE Alu -7 305 1 461 238 31 62 chr4 74974693 74974853 -127353494 - L1MC5 LINE L1 -46 7915 7761 450 246 125 22 chr4 74975183 74975437 -127352910 + MLT1J LTR MaLR 124 448 -63 1307 179 47 90 chr4 74975440 74975597 -127352750 + AluJo SINE Alu 3 142 -170 2197 108 28 0 chr4 74975597 74975884 -127352463 + AluSg SINE Alu 1 295 -15 1307 179 47 90 chr4 74975884 74976027 -127352320 + AluJo SINE Alu 142 290 -22 2084 108 3 29 chr4 74976052 74976358 -127351989 + AluSc SINE Alu 7 304 -5 199 0 65 0 chr4 74976596 74976627 -127351720 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2032 101 11 4 chr4 74976629 74976906 -127351441 - AluSg SINE Alu -31 279 1 2149 134 0 0 chr4 74976908 74977213 -127351134 - AluSq SINE Alu -8 305 1 2191 127 0 0 chr4 74977238 74977538 -127350809 - AluSx SINE Alu -12 300 1 2258 129 0 0 chr4 74978369 74978672 -127349675 - AluSx SINE Alu -9 303 1 830 175 15 7 chr4 74978956 74979093 -127349254 + FLAM_C SINE Alu 2 139 -4 751 171 8 0 chr4 74979627 74979750 -127348597 + FLAM_A SINE Alu 12 135 -7 1398 153 45 21 chr4 74980243 74980485 -127347862 + MLT1D LTR MaLR 258 505 0 2140 123 0 10 chr4 74980513 74980821 -127347526 + AluSq SINE Alu 3 307 -6 2007 157 0 0 chr4 74980915 74981220 -127347127 - AluJb SINE Alu -7 305 1 2181 109 7 0 chr4 74981232 74981526 -127346821 - AluSx SINE Alu -16 296 1 368 241 0 11 chr4 74981531 74981618 -127346729 - L1MC4 LINE L1 -1 8041 7956 3273 218 181 18 chr4 74981660 74981707 -127346640 - L1MC4 LINE L1 -372 7670 7632 1765 167 13 3 chr4 74981707 74982006 -127346341 - AluJb SINE Alu -10 302 1 3273 218 181 18 chr4 74982006 74982179 -127346168 - L1MC4 LINE L1 -410 7632 7489 1590 190 28 0 chr4 74982179 74982191 -127346156 - AluJb SINE Alu -12 300 290 461 43 0 29 chr4 74982191 74982260 -127346087 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1590 190 28 0 chr4 74982260 74982537 -127345810 - AluJb SINE Alu -22 290 3 3273 218 181 18 chr4 74982537 74982890 -127345457 - L1MC4 LINE L1 -553 7489 7195 1734 196 45 22 chr4 74982890 74983247 -127345100 + MLT1A1 LTR MaLR 1 365 0 3273 218 181 18 chr4 74983247 74983713 -127344634 - L1MC4 LINE L1 -847 7195 6459 2386 75 48 140 chr4 74984207 74984622 -127343725 - MER51B LTR ERV1 0 377 1 7798 174 96 63 chr4 74984626 74985523 -127342824 - MER51B-int LTR ERV1 -3 7813 6947 2196 116 0 3 chr4 74985523 74985817 -127342530 - AluSx SINE Alu -19 293 1 7798 174 96 63 chr4 74985817 74986910 -127341437 - MER51B-int LTR ERV1 -869 6947 5758 1515 104 133 4 chr4 74986909 74987158 -127341189 - MER61-int LTR ERV1 -2572 2645 2365 * 3425 11 0 1 chr4 74987158 74987765 -127340582 - L1PA3 LINE L1 -521 5634 5029 4681 18 6 0 chr4 74987765 74988270 -127340077 + L1PA3 LINE L1 5645 6155 0 679 77 0 3 chr4 74988271 74988396 -127339951 - MER61-int LTR ERV1 -2839 2378 2210 * 1647 131 174 96 chr4 74988375 74988443 -127339904 - MER61-int LTR ERV1 -2578 3368 3307 2250 102 0 0 chr4 74988443 74988747 -127339600 - AluSx SINE Alu -8 304 1 1647 131 174 96 chr4 74988747 74989168 -127339179 - MER61-int LTR ERV1 -2639 3307 2841 341 117 17 0 chr4 74989169 74989229 -127339118 + CT-rich Low_complexity Low_complexity 4 64 0 1719 103 9 0 chr4 74989240 74989473 -127338874 - AluSx SINE Alu -77 235 1 6475 199 83 93 chr4 74989489 74990466 -127337881 - MER61-int LTR ERV1 -4501 3315 2329 1963 128 7 10 chr4 74990466 74990754 -127337593 - AluSg SINE Alu -23 287 1 6475 199 83 93 chr4 74990754 74992389 -127335958 - MER61-int LTR ERV1 -5487 2329 730 802 162 0 0 chr4 74992393 74992510 -127335837 - FLAM_C SINE Alu -24 119 3 2135 80 29 29 chr4 74992677 74992988 -127335359 + AluY SINE Alu 1 311 0 3290 71 0 24 chr4 74993493 74993918 -127334429 - L1PA6 LINE L1 -3 6151 5737 22 35 0 0 chr4 74993928 74993957 -127334390 + AT_rich Low_complexity Low_complexity 1 29 0 1933 120 29 4 chr4 74994042 74994344 -127334003 - AluSx SINE Alu 0 311 3 241 269 194 0 chr4 74994593 74994660 -127333687 + MER5A DNA MER1_type 5 84 -105 1527 179 15 7 chr4 74994998 74995271 -127333076 - AluJb SINE Alu -15 297 23 23 0 0 0 chr4 74995273 74995296 -127333051 + AT_rich Low_complexity Low_complexity 1 23 0 363 282 61 24 chr4 74995312 74995500 -127332847 + MIR SINE MIR 20 212 -50 202 289 0 19 chr4 74995634 74995686 -127332661 - L2 LINE L2 -12 3260 3210 2345 71 34 3 chr4 74995735 74996030 -127332317 + AluY SINE Alu 2 305 -6 2377 88 0 3 chr4 74996266 74996562 -127331785 + AluSx SINE Alu 1 295 -17 2239 107 3 3 chr4 74997303 74997602 -127330745 - AluSg SINE Alu -11 299 1 821 164 0 16 chr4 74997768 74997896 -127330451 - FLAM_C SINE Alu -7 126 1 228 306 0 0 chr4 74997993 74998055 -127330292 - L1ME LINE L1 -569 5552 5491 1998 136 33 0 chr4 74998179 74998481 -127329866 - AluSx SINE Alu 0 312 1 1617 172 0 91 chr4 74998488 74998656 -127329691 - AluJo SINE Alu -1 301 176 2032 45 49 0 chr4 74998656 74998901 -127329446 - AluY SINE Alu -14 297 41 1617 172 0 91 chr4 74998901 74999063 -127329284 - AluJo SINE Alu -126 176 1 22 35 0 0 chr4 74999072 74999101 -127329246 + AT_rich Low_complexity Low_complexity 1 29 0 192 77 0 0 chr4 74999969 74999995 -127328352 + (T)n Simple_repeat Simple_repeat 1 26 0 1563 178 25 0 chr4 75000763 75001038 -127327309 - AluJo SINE Alu -30 282 1 21 36 0 0 chr4 75001208 75001236 -127327111 + AT_rich Low_complexity Low_complexity 1 28 0 327 302 120 41 chr4 75001456 75001698 -127326649 - MIR SINE MIR 0 262 2 1967 150 158 13 chr4 75001968 75002342 -127326005 - MSTA LTR MaLR 0 428 1 324 213 0 40 chr4 75002470 75002545 -127325802 - HAL1 LINE L1 -1 2506 2435 2525 78 0 0 chr4 75002551 75002858 -127325489 - AluSg SINE Alu -3 307 1 832 149 0 8 chr4 75002913 75003047 -127325300 + AluJb SINE Alu 1 133 -179 2209 125 0 3 chr4 75003089 75003394 -127324953 - AluSx SINE Alu -8 304 1 302 258 113 82 chr4 75003419 75003464 -127324883 - HAL1 LINE L1 -373 2134 2092 2198 113 0 10 chr4 75003464 75003764 -127324583 - AluSx SINE Alu -15 297 1 302 258 113 82 chr4 75003764 75003877 -127324470 - HAL1 LINE L1 -415 2092 1971 49 43 0 0 chr4 75003888 75003958 -127324389 + AT_rich Low_complexity Low_complexity 1 70 0 844 141 113 38 chr4 75003963 75004148 -127324199 - AluJo SINE Alu -24 288 90 1592 130 0 130 chr4 75004668 75004856 -127323491 - AluSx SINE Alu -14 298 170 2818 13 0 0 chr4 75004856 75005159 -127323188 - AluYa5 SINE Alu -8 303 1 1592 130 0 130 chr4 75005159 75005301 -127323046 - AluSx SINE Alu -142 170 11 487 200 33 0 chr4 75005425 75005515 -127322832 - AluJo SINE Alu -219 93 1 3124 258 102 61 chr4 75005521 75005919 -127322428 - HAL1 LINE L1 -589 1918 1538 2193 105 0 10 chr4 75005919 75006223 -127322124 - AluSx SINE Alu -8 304 4 3124 258 102 61 chr4 75006223 75006500 -127321847 - HAL1 LINE L1 -969 1538 1274 1961 129 0 66 chr4 75006500 75006834 -127321513 - AluSx SINE Alu 0 312 1 3124 258 102 61 chr4 75006834 75007771 -127320576 - HAL1 LINE L1 -1233 1274 239 1057 135 5 4 chr4 75007786 75007993 -127320354 - AluSp SINE Alu -13 300 1 397 257 164 27 chr4 75008222 75008405 -127319942 + HAL1 LINE L1 10 217 -2290 1221 146 10 24 chr4 75008407 75008612 -127319735 + AluSx SINE Alu 3 204 -108 2744 136 162 95 chr4 75008617 75009353 -127318994 - LTR1 LTR ERV1 0 785 1 565 158 0 32 chr4 75009353 75009448 -127318899 + AluSx SINE Alu 203 294 -15 21 0 0 0 chr4 75009654 75009675 -127318672 + AT_rich Low_complexity Low_complexity 1 21 0 2494 57 14 0 chr4 75009684 75009980 -127318367 - AluSp SINE Alu -13 300 1 2401 90 0 0 chr4 75010338 75010648 -127317699 - AluY SINE Alu -1 310 1 22 0 0 0 chr4 75010988 75011010 -127317337 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr4 75011320 75011352 -127316995 + AT_rich Low_complexity Low_complexity 1 32 0 342 262 98 8 chr4 75012013 75012135 -127316212 - L1ME2 LINE L1 -9 6155 6023 567 171 102 35 chr4 75012898 75013063 -127315284 - MER69 DNA AcHobo -51 2475 2323 1921 129 50 0 chr4 75013063 75013342 -127315005 - AluSx SINE Alu -19 293 1 567 171 102 35 chr4 75013342 75013535 -127314812 - MER69 DNA AcHobo -203 2323 2053 2035 88 109 102 chr4 75013548 75013969 -127314378 - MSTA LTR MaLR -4 424 1 876 268 176 40 chr4 75014000 75014380 -127313967 - MER69 DNA AcHobo -2027 499 68 399 333 180 13 chr4 75014634 75014862 -127313485 - L2 LINE L2 -10 3262 2997 228 86 0 0 chr4 75015079 75015114 -127313233 + (T)n Simple_repeat Simple_repeat 1 35 0 306 327 77 19 chr4 75015346 75015502 -127312845 - L2 LINE L2 -12 3260 3096 943 169 24 58 chr4 75015650 75015898 -127312449 - MER4C LTR ERV1 0 695 273 292 194 16 16 chr4 75015894 75015956 -127312391 - MER4A LTR ERV1 -602 62 1 * 993 183 32 55 chr4 75016277 75016496 -127311851 - AluJo SINE Alu -12 300 87 1538 238 15 48 chr4 75016497 75016631 -127311716 - L1M4 LINE L1 -849 5297 5160 1575 175 67 3 chr4 75016631 75016916 -127311431 - AluJb SINE Alu -9 303 1 1538 238 15 48 chr4 75016916 75017261 -127311086 - L1M4 LINE L1 -986 5160 4834 290 189 14 40 chr4 75017315 75017389 -127310958 - L1MB8 LINE L1 -10 6168 6097 300 248 234 47 chr4 75068220 75068484 -127259863 + MLT1G1 LTR MaLR 223 562 -33 2019 112 0 7 chr4 75069360 75069650 -127258697 + AluSx SINE Alu 17 304 0 30 77 0 0 chr4 75070959 75071024 -127257323 + AT_rich Low_complexity Low_complexity 1 65 0 539 287 160 36 chr4 75072273 75072458 -127255889 - MARNA DNA Mariner -87 499 338 2202 123 13 0 chr4 75072458 75072766 -127255581 + AluSx SINE Alu 1 312 0 539 287 160 36 chr4 75072766 75072967 -127255380 - MARNA DNA Mariner -248 338 65 23 0 0 0 chr4 75075129 75075152 -127253195 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr4 75075604 75075636 -127252711 + AT_rich Low_complexity Low_complexity 1 32 0 592 173 0 0 chr4 75076398 75076502 -127251845 - AluSq/x SINE Alu -209 104 1 568 117 8 25 chr4 75076517 75076648 -127251699 + L1MC1 LINE L1 2380 2511 -3915 8577 208 66 28 chr4 75076649 75076731 -127251616 + L1MC1 LINE L1 2804 2881 -3732 2727 7 0 7 chr4 75076731 75077032 -127251315 + AluYa5 SINE Alu 1 299 -12 8577 208 66 28 chr4 75077032 75077346 -127251001 + L1MC1 LINE L1 2881 3182 -3431 2060 114 11 4 chr4 75077346 75077646 -127250701 + AluSx SINE Alu 2 303 0 8577 208 66 28 chr4 75077646 75078013 -127250334 + L1MC1 LINE L1 3182 3534 -3079 2158 133 0 0 chr4 75078013 75078313 -127250034 + AluSx SINE Alu 1 300 -12 8577 208 66 28 chr4 75078313 75078802 -127249545 + L1MC1 LINE L1 3534 4003 -2610 2241 133 13 39 chr4 75078802 75078840 -127249507 - THE1C LTR MaLR -3 372 335 2224 116 7 3 chr4 75078840 75079150 -127249197 + AluSq SINE Alu 1 311 -2 2241 133 13 39 chr4 75079150 75079493 -127248854 - THE1C LTR MaLR -40 335 1 8577 208 66 28 chr4 75079493 75080310 -127248037 + L1MC1 LINE L1 4003 4788 -1825 1876 157 10 13 chr4 75080310 75080616 -127247731 + AluJo SINE Alu 1 305 -7 8577 208 66 28 chr4 75080616 75082218 -127246129 + L1MC1 LINE L1 4788 6601 -12 879 186 66 134 chr4 75082250 75082690 -127245657 - LTR7 LTR ERV1 -40 410 1 3693 114 5 9 chr4 75082690 75083249 -127245098 - HERVH LTR ERV1 0 7713 7157 1436 150 15 11 chr4 75083242 75083502 -127244845 - HERVH LTR ERV1 -1697 6016 5756 * 4057 151 6 5 chr4 75083492 75084752 -127243595 - HERVH LTR ERV1 -2735 4258 3357 9069 195 59 67 chr4 75084752 75087604 -127240743 - HERVH LTR ERV1 -4883 2830 1 718 89 20 0 chr4 75087611 75087712 -127240635 - LTR7 LTR ERV1 -7 443 341 727 184 81 5 chr4 75087745 75087930 -127240417 + L1MD3 LINE L1 7788 7986 -9 1673 161 30 20 chr4 75087935 75088234 -127240113 + AluJo SINE Alu 2 303 -9 23 0 0 0 chr4 75088624 75088647 -127239700 + AT_rich Low_complexity Low_complexity 1 23 0 23 86 0 0 chr4 75088764 75088822 -127239525 + AT_rich Low_complexity Low_complexity 1 58 0 21 36 0 0 chr4 75088893 75088921 -127239426 + AT_rich Low_complexity Low_complexity 1 28 0 429 265 68 27 chr4 75089782 75089929 -127238418 + MLT1L LTR MaLR 387 539 -76 1894 138 17 17 chr4 75090331 75090468 -127237879 + AluSx SINE Alu 1 137 -175 2369 81 3 0 chr4 75090468 75090765 -127237582 + AluSp SINE Alu 1 298 -15 1894 138 17 17 chr4 75090765 75090924 -127237423 + AluSx SINE Alu 136 297 -15 460 108 15 0 chr4 75090987 75091052 -127237295 - AluJo SINE Alu -41 271 206 1027 150 0 13 chr4 75091054 75091207 -127237140 - AluJo SINE Alu -153 159 9 30 0 0 0 chr4 75092510 75092540 -127235807 + AT_rich Low_complexity Low_complexity 1 30 0 309 231 125 100 chr4 75093116 75093276 -127235071 - MIR SINE MIR -95 167 4 822 157 7 26 chr4 75094184 75094337 -127234010 + MER3 DNA MER1_type 38 187 -22 23 78 0 0 chr4 75094770 75094821 -127233526 + AT_rich Low_complexity Low_complexity 1 51 0 488 188 15 113 chr4 75095365 75095498 -127232849 - L2 LINE L2 -3 3310 3191 276 324 0 0 chr4 75096123 75096191 -127232156 + Charlie1 DNA MER1_type 1 68 -2693 * 1221 185 127 33 chr4 75096183 75096546 -127231801 + Charlie1 DNA MER1_type 2365 2761 0 669 273 26 99 chr4 75097365 75097505 -127230842 + MER102a DNA MER1_type 2 151 -1266 2045 113 0 0 chr4 75097505 75097780 -127230567 - AluY SINE Alu -12 299 25 669 273 26 99 chr4 75097780 75097991 -127230356 + MER102a DNA MER1_type 151 327 -3 2842 13 0 0 chr4 75098150 75098462 -127229885 + AluYb8 SINE Alu 1 312 -6 1837 198 92 122 chr4 75098506 75099440 -127228907 + L1MC5 LINE L1 6625 7524 -437 2180 114 3 13 chr4 75099440 75099747 -127228600 + AluSx SINE Alu 4 307 -5 1837 198 92 122 chr4 75099747 75099889 -127228458 + L1MC5 LINE L1 7524 7669 -292 536 176 72 16 chr4 75100015 75100140 -127228207 + L1MB2 LINE L1 6039 6170 -1 2172 121 0 13 chr4 75100553 75100867 -127227480 + AluJb SINE Alu 1 310 -2 314 315 86 34 chr4 75100972 75101097 -127227250 + L1ME4a LINE L1 5543 5660 -461 2380 79 0 7 chr4 75101097 75101402 -127226945 + AluY SINE Alu 1 303 -8 314 315 86 34 chr4 75101402 75101543 -127226804 + L1ME4a LINE L1 5660 5823 -298 39400 51 3 4 chr4 75101589 75107350 -127220997 - L1PA5 LINE L1 -6 6148 395 303 267 29 9 chr4 75107423 75107528 -127220819 + L1ME4a LINE L1 6004 6110 -11 1559 177 32 11 chr4 75107867 75108150 -127220197 + AluJb SINE Alu 1 289 -23 270 106 0 0 chr4 75108241 75108288 -127220059 + Alu SINE Alu 254 300 0 2197 96 0 21 chr4 75108297 75108588 -127219759 + AluSx SINE Alu 16 300 -12 621 86 43 0 chr4 75108719 75108812 -127219535 + L1MA8 LINE L1 6176 6272 -19 284 149 75 9 chr4 75108814 75108921 -127219426 + (TA)n Simple_repeat Simple_repeat 1 114 0 34 42 0 0 chr4 75108932 75108980 -127219367 + AT_rich Low_complexity Low_complexity 1 48 0 185 269 64 51 chr4 75109187 75109265 -127219082 + L3b LINE CR1 1478 1556 -27 373 172 92 0 chr4 75110360 75110447 -127217900 - L1MA4A LINE L1 -27 6276 6182 486 262 18 0 chr4 75110460 75110628 -127217719 - L1MA4 LINE L1 -207 6093 5923 221 217 58 133 chr4 75110815 75110935 -127217412 - L3 LINE CR1 -27 1550 1440 704 277 129 39 chr4 75111072 75111509 -127216838 + L1ME3A LINE L1 5319 5826 -344 1766 145 3 58 chr4 75111509 75111819 -127216528 + AluJb SINE Alu 12 304 -8 704 277 129 39 chr4 75111819 75111977 -127216370 + L1ME3A LINE L1 5826 5968 -202 274 291 80 20 chr4 75112074 75112225 -127216122 + L1ME3A LINE L1 5990 6149 -21 1712 167 7 0 chr4 75112704 75112973 -127215374 - AluJo SINE Alu -15 297 27 441 61 15 0 chr4 75112973 75113039 -127215308 + MER41B LTR ERV1 481 547 -88 1770 94 41 19 chr4 75113375 75113641 -127214706 - AluSq SINE Alu 0 313 42 2060 84 19 0 chr4 75113741 75114002 -127214345 + AluSp SINE Alu 33 298 -15 22 56 0 0 chr4 75114040 75114076 -127214271 + AT_rich Low_complexity Low_complexity 1 36 0 28687 109 18 57 chr4 75114089 75120492 -127207855 + L1PA7 LINE L1 9 6154 0 1990 156 3 0 chr4 75120562 75120870 -127207477 - AluSx SINE Alu -3 309 1 872 174 73 0 chr4 75120891 75121069 -127207278 + MER2 DNA MER2_type 2 192 -153 348 244 0 26 chr4 75121100 75121178 -127207169 + MER2 DNA MER2_type 270 345 0 252 128 0 0 chr4 75121178 75121217 -127207130 - L1ME3 LINE L1 -76 6086 6048 554 202 16 16 chr4 75123011 75123135 -127205212 - Charlie8 DNA MER1_type -2220 197 74 775 217 19 0 chr4 75123135 75123292 -127205055 - AluJo/FRAM SINE Alu -6 296 137 1428 174 38 35 chr4 75123292 75123579 -127204768 - AluSx SINE Alu -15 297 10 1585 176 41 7 chr4 75123917 75124207 -127204140 - AluJo SINE Alu -12 300 1 21 0 0 0 chr4 75124545 75124566 -127203781 + AT_rich Low_complexity Low_complexity 1 21 0 1891 186 42 7 chr4 75124850 75125281 -127203066 + L1ME1 LINE L1 5716 6161 -5 270 311 92 25 chr4 75126409 75126528 -127201819 - MIR SINE MIR -102 160 34 188 154 26 26 chr4 75126693 75126732 -127201615 - L2 LINE L2 -19 3294 3256 595 210 77 100 chr4 75126983 75127283 -127201064 + MER51C LTR ERV1 348 640 0 1275 146 123 5 chr4 75128008 75128227 -127200120 + AluJb SINE Alu 40 284 -28 489 168 111 188 chr4 75128372 75128471 -127199876 - MER46C DNA MER2_type -2 336 231 1423 172 42 18 chr4 75128471 75128756 -127199591 + AluJo SINE Alu 1 292 -20 489 168 111 188 chr4 75128756 75128961 -127199386 - MER46C DNA MER2_type -107 231 60 2159 120 7 0 chr4 75128961 75129260 -127199087 + AluSx SINE Alu 1 301 -11 489 168 111 188 chr4 75129260 75129306 -127199041 - MER46C DNA MER2_type -278 60 12 1871 94 66 18 chr4 75130089 75130375 -127197972 - AluSg SINE Alu -10 300 1 2549 141 33 14 chr4 75130648 75131398 -127196949 + L1MA7 LINE L1 4864 5622 -669 1120 208 25 53 chr4 75131408 75131692 -127196655 + L1PA12 LINE L1 9 284 -7297 2302 88 7 0 chr4 75131710 75132005 -127196342 + AluSc SINE Alu 11 307 -2 1274 180 40 74 chr4 75132009 75132359 -127195988 - THE1C LTR MaLR -37 338 1 12914 208 21 31 chr4 75132368 75136105 -127192242 + L1PA12 LINE L1 1436 5133 -2451 6327 80 24 19 chr4 75136106 75137269 -127191078 + L1PA11 LINE L1 4989 6174 0 41 36 0 0 chr4 75137270 75137325 -127191022 + AT_rich Low_complexity Low_complexity 1 55 0 2475 115 129 95 chr4 75137325 75137442 -127190905 + L1MA7 LINE L1 5601 5713 -578 253 88 0 0 chr4 75137442 75137476 -127190871 - U2 snRNA snRNA -154 34 1 2475 115 129 95 chr4 75137476 75137546 -127190801 + L1MA7 LINE L1 5713 5779 -512 2261 122 0 0 chr4 75137546 75137858 -127190489 + AluSx SINE Alu 1 312 0 2475 115 129 95 chr4 75137858 75138280 -127190067 + L1MA7 LINE L1 5779 6266 -25 28 0 0 0 chr4 75138280 75138308 -127190039 + AT_rich Low_complexity Low_complexity 1 28 0 1767 188 3 0 chr4 75138916 75139209 -127189138 - AluJb SINE Alu -18 294 1 996 193 63 98 chr4 75139622 75140000 -127188347 - MLT1A1 LTR MaLR 0 365 1 505 289 102 19 chr4 75140047 75140372 -127187975 - MARNA DNA Mariner -61 525 174 476 259 35 75 chr4 75140593 75140767 -127187580 + MIR SINE MIR 9 175 -87 242 196 0 0 chr4 75141002 75141053 -127187294 + L1ME4a LINE L1 5977 6027 -94 274 58 58 0 chr4 75141128 75141180 -127187167 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 40783 33 22 1 chr4 75141180 75147191 -127181156 - L1PA3 LINE L1 -13 6142 1 292 211 0 0 chr4 75147207 75147259 -127181088 - L2 LINE L2 0 3313 3262 1364 7 0 0 chr4 75148034 75148184 -127180163 + AluY SINE Alu 154 303 -8 479 146 0 56 chr4 75148857 75148946 -127179401 + FRAM SINE Alu 75 158 -18 397 236 142 18 chr4 75148948 75149173 -127179174 - L1ME4a LINE L1 -25 6096 5844 1260 115 0 17 chr4 75149252 75149426 -127178921 + AluSq SINE Alu 1 171 -142 587 69 11 0 chr4 75151330 75151417 -127176930 + L1MA3 LINE L1 6218 6305 0 256 259 143 27 chr4 75151540 75151652 -127176695 + MIR SINE MIR 86 210 -52 555 265 93 0 chr4 75152127 75152278 -127176069 + MIR SINE MIR 47 211 -51 212 187 66 99 chr4 75152276 75152367 -127175980 + L2 LINE L2 3159 3246 -67 * 540 250 87 163 chr4 75152983 75153375 -127174972 + L2 LINE L2 2911 3272 0 204 328 172 17 chr4 75153495 75153611 -127174736 - MIR3 SINE MIR -72 136 3 204 264 79 39 chr4 75153660 75153772 -127174575 - MIR SINE MIR -75 187 20 1664 193 3 7 chr4 75155087 75155382 -127172965 - AluJo SINE Alu -18 294 1 2429 93 0 0 chr4 75155396 75155698 -127172649 - AluSq SINE Alu -11 302 1 481 215 32 51 chr4 75155717 75155875 -127172472 - L1ME3 LINE L1 -67 6095 5941 1717 145 16 40 chr4 75155884 75156188 -127172159 - AluJb SINE Alu -3 309 13 352 284 28 28 chr4 75156393 75156569 -127171778 + MLT1J LTR MaLR 3 178 -333 339 328 66 11 chr4 75156722 75156905 -127171442 + MLT1L LTR MaLR 403 595 -20 256 297 44 22 chr4 75157402 75157493 -127170854 + L2 LINE L2 3180 3272 0 643 317 81 24 chr4 75157531 75157913 -127170434 - MLT1I LTR MaLR 0 409 6 203 229 0 0 chr4 75158177 75158212 -127170135 - MER5A DNA MER1_type -91 98 64 2048 150 10 0 chr4 75158322 75158629 -127169718 + AluSx SINE Alu 1 310 -2 24 32 0 0 chr4 75158781 75158812 -127169535 + AT_rich Low_complexity Low_complexity 1 31 0 793 266 159 19 chr4 75159003 75159367 -127168980 - L1MC4a LINE L1 -1885 5923 5509 250 316 62 44 chr4 75159409 75160051 -127168296 - L1MC4a LINE L1 -980 5166 4513 286 259 74 34 chr4 75160062 75160090 -127168257 - L1MC4a LINE L1 -1741 4405 4380 1535 180 76 3 chr4 75160090 75160274 -127168073 - AluJb SINE Alu -2 310 96 198 0 0 0 chr4 75160274 75160296 -127168051 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1535 180 76 3 chr4 75160296 75160400 -127167947 - AluJb SINE Alu -216 96 1 286 259 74 34 chr4 75160400 75160675 -127167672 - L1MC4a LINE L1 -1766 4380 4084 970 231 57 37 chr4 75160812 75161110 -127167237 + L2 LINE L2 3005 3308 -5 1389 158 0 14 chr4 75161133 75161348 -127166999 + AluJb SINE Alu 1 212 -100 481 203 8 8 chr4 75161911 75162034 -127166313 + GA-rich Low_complexity Low_complexity 3 125 0 1351 260 68 57 chr4 75162728 75163021 -127165326 + L2 LINE L2 2750 3068 -245 2069 78 33 0 chr4 75163021 75163341 -127165006 + AluSc SINE Alu 1 329 0 1351 260 68 57 chr4 75163341 75163589 -127164758 + L2 LINE L2 3068 3312 -1 1890 137 4 7 chr4 75163602 75163879 -127164468 + AluSx SINE Alu 21 296 -16 1733 181 10 0 chr4 75164042 75164330 -127164017 + AluJb SINE Alu 1 291 -21 366 172 30 0 chr4 75164330 75164429 -127163918 + (TA)n Simple_repeat Simple_repeat 1 102 0 743 105 9 9 chr4 75164547 75164652 -127163695 - AluSq/x SINE Alu -207 106 2 233 57 29 0 chr4 75165403 75165438 -127162909 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 2273 132 0 0 chr4 75166000 75166310 -127162037 - AluSx SINE Alu -2 310 1 1912 162 3 13 chr4 75166685 75166993 -127161354 + AluJb SINE Alu 1 305 -7 22 0 0 0 chr4 75168256 75168278 -127160069 + AT_rich Low_complexity Low_complexity 1 22 0 2152 128 3 0 chr4 75170040 75170344 -127158003 - AluSx SINE Alu -7 305 1 25 0 0 0 chr4 75170386 75170411 -127157936 + AT_rich Low_complexity Low_complexity 1 25 0 434 298 88 51 chr4 75170876 75171091 -127157256 + MIR SINE MIR 20 242 -20 210 37 0 0 chr4 75171192 75171219 -127157128 + (TC)n Simple_repeat Simple_repeat 2 28 0 43644 49 2 0 chr4 75171597 75177688 -127150659 - L1PA4 LINE L1 -2 6153 49 2015 153 7 0 chr4 75178132 75178439 -127149908 - AluSx SINE Alu -3 309 1 2378 84 0 3 chr4 75178445 75178744 -127149603 - AluY SINE Alu -13 298 1 2365 83 0 7 chr4 75180006 75180307 -127148040 + AluSc SINE Alu 1 299 -10 2225 119 3 0 chr4 75180350 75180652 -127147695 - AluSx SINE Alu -1 311 9 526 336 87 57 chr4 75182816 75183218 -127145129 - L2 LINE L2 -16 3256 2843 210 294 192 0 chr4 75183465 75183611 -127144736 - L2 LINE L2 -1074 2240 2067 1188 156 20 52 chr4 75183671 75183921 -127144426 + MER96B DNA MER1_type? 34 275 -142 307 262 37 37 chr4 75183922 75184029 -127144318 - L2 LINE L2 -1318 1996 1890 307 125 0 0 chr4 75184165 75184213 -127144134 - L1MB4 LINE L1 -1 6179 6132 6204 117 14 13 chr4 75184213 75185744 -127142603 - L1PA14 LINE L1 0 6161 4628 12838 188 17 10 chr4 75185752 75188170 -127140177 + L1P LINE L1 2081 4517 -1629 2480 79 0 0 chr4 75188170 75188475 -127139872 + AluY SINE Alu 1 305 -6 12838 188 17 10 chr4 75188475 75188577 -127139770 + L1P LINE L1 4517 4617 -1529 457 216 45 9 chr4 75188596 75188707 -127139640 - L1MB3 LINE L1 -41 6142 6028 38483 31 23 1 chr4 75188728 75194151 -127134196 + L1PA3 LINE L1 631 6155 0 1368 119 40 99 chr4 75194194 75194535 -127133812 - L1M4 LINE L1 -3784 2598 2273 2024 131 3 10 chr4 75194535 75194841 -127133506 - AluSx SINE Alu -8 304 1 1368 119 40 99 chr4 75194841 75194890 -127133457 - L1M4 LINE L1 -4109 2273 2223 1168 199 28 0 chr4 75194892 75195108 -127133239 - AluJo SINE Alu -4 308 87 4393 134 153 11 chr4 75195108 75195956 -127132391 - L1M4 LINE L1 -4147 2237 1269 6092 135 31 53 chr4 75195971 75196721 -127131626 - L1M4 LINE L1 -5296 1088 368 1905 163 3 10 chr4 75196721 75197034 -127131313 - AluSx SINE Alu 0 312 2 6092 135 31 53 chr4 75197034 75197377 -127130970 - L1M4 LINE L1 -6016 368 19 1847 168 30 0 chr4 75197398 75197696 -127130651 - AluJb SINE Alu -3 309 3 423 284 9 26 chr4 75198334 75198450 -127129897 - MER81 DNA DNA 0 114 1 1888 103 3 81 chr4 75198559 75198879 -127129468 - AluSq SINE Alu -18 295 1 2214 125 0 3 chr4 75198885 75199189 -127129158 - AluSx SINE Alu -9 303 1 433 281 37 49 chr4 75199844 75200008 -127128339 - MER5A DNA MER1_type -27 162 1 2385 64 3 0 chr4 75201158 75201456 -127126891 + AluY SINE Alu 1 299 -12 8335 16 0 4 chr4 75201456 75202546 -127125801 + L1PA3 LINE L1 5070 6155 0 250 67 44 0 chr4 75202562 75202607 -127125740 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2264 109 3 0 chr4 75203074 75203386 -127124961 - AluSq SINE Alu 0 313 1 2269 84 3 0 chr4 75203869 75204153 -127124194 + AluSp SINE Alu 14 298 -15 1503 211 3 16 chr4 75204168 75204471 -127123876 - AluJo SINE Alu -9 303 5 247 245 49 43 chr4 75204970 75205066 -127123281 - L1M1 LINE L1 -3200 4365 4266 2267 105 3 3 chr4 75205066 75205371 -127122976 - AluSp SINE Alu -8 305 1 247 245 49 43 chr4 75205371 75205458 -127122889 - L1M1 LINE L1 -3299 4266 4181 351 272 58 29 chr4 75205655 75205890 -127122457 - L1M1 LINE L1 -4573 2992 2857 1791 173 25 6 chr4 75206118 75206436 -127121911 + L1MC1 LINE L1 6010 6333 0 240 282 36 9 chr4 75206442 75206552 -127121795 - HAL1 LINE L1 -967 1540 1428 1094 196 0 31 chr4 75206574 75206798 -127121549 - AluJo SINE Alu -10 302 86 533 291 125 39 chr4 75206842 75207480 -127120867 - L1MEd LINE L1 -4862 1257 565 1386 83 0 0 chr4 75207780 75207949 -127120398 + AluSq SINE Alu 1 169 -144 2145 173 28 92 chr4 75207949 75208592 -127119755 + pTR5 LTR ERV1 743 1344 -1094 4749 113 98 47 chr4 75208608 75209390 -127118957 + LTR12 LTR ERV1 5 826 0 1079 78 0 7 chr4 75209390 75209531 -127118816 + AluSg/x SINE Alu 166 305 -7 273 269 242 11 chr4 75210166 75210538 -127117809 + HAL1 LINE L1 986 1443 -1064 2232 108 3 0 chr4 75211369 75211664 -127116683 - AluSc SINE Alu -13 296 1 1184 265 74 60 chr4 75211969 75212501 -127115846 + Charlie7 DNA MER1_type 7 553 -2059 1338 167 118 8 chr4 75212501 75212764 -127115583 + AluSx SINE Alu 1 292 -20 1184 265 74 60 chr4 75212764 75212944 -127115403 + Charlie7 DNA MER1_type 553 729 -1883 1434 199 159 10 chr4 75212950 75213448 -127114899 - MER69 DNA AcHobo -1 2525 1954 3243 232 76 43 chr4 75213465 75214505 -127113842 - MER69 DNA AcHobo -1451 1075 2 639 224 90 32 chr4 75214651 75215030 -127113317 + Charlie7 DNA MER1_type 2202 2602 -10 1246 162 143 34 chr4 75215036 75215272 -127113075 + AluSg1 SINE Alu 1 271 -38 2094 108 38 54 chr4 75215272 75215642 -127112705 - THE1B LTR MaLR 0 364 1 1246 162 143 34 chr4 75215642 75215671 -127112676 + AluSg1 SINE Alu 271 295 -14 1857 183 3 0 chr4 75215693 75215983 -127112364 - AluSx SINE Alu -21 291 1 6085 112 2 20 chr4 75216163 75217341 -127111006 + L1PA15 LINE L1 4996 6157 -8 1548 191 3 36 chr4 75217429 75217732 -127110615 - AluJo SINE Alu -19 293 1 232 295 76 38 chr4 75217920 75218025 -127110322 + L2 LINE L2 3160 3268 -4 23 0 0 0 chr4 75219122 75219145 -127109202 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 75219272 75219300 -127109047 + AT_rich Low_complexity Low_complexity 1 28 0 386 243 137 109 chr4 75220480 75220927 -127107420 - MLT1G1 LTR MaLR 0 595 21 1999 124 50 29 chr4 75222342 75222491 -127105856 - L1MA8 LINE L1 -1 6290 6146 2250 110 0 0 chr4 75222491 75222790 -127105557 - AluSx SINE Alu -13 299 1 1999 124 50 29 chr4 75222790 75223019 -127105328 - L1MA8 LINE L1 -145 6146 5904 539 303 32 5 chr4 75223778 75223963 -127104384 + MIR SINE MIR 8 197 -65 2562 62 0 0 chr4 75225949 75226257 -127102090 + AluY SINE Alu 1 308 -3 351 0 0 0 chr4 75226374 75226413 -127101934 + (TG)n Simple_repeat Simple_repeat 2 40 0 268 202 30 147 chr4 75226416 75226614 -127101733 + MER102a DNA MER1_type 156 330 0 1864 119 0 0 chr4 75226902 75227195 -127101152 - L1MA4A LINE L1 -3 6300 6008 1875 173 0 3 chr4 75227332 75227638 -127100709 + AluJb SINE Alu 1 305 -7 963 266 55 31 chr4 75227642 75228060 -127100287 + L2 LINE L2 2222 2649 -665 1508 177 38 41 chr4 75228069 75228437 -127099910 - L1MA7 LINE L1 -10 6281 5915 560 328 252 8 chr4 75228444 75228984 -127099363 + L2 LINE L2 2643 3313 0 226 189 19 0 chr4 75229705 75229758 -127098589 - Alu SINE Alu 0 302 249 216 0 0 0 chr4 75229956 75229980 -127098367 + (T)n Simple_repeat Simple_repeat 1 24 0 24436 34 1 0 chr4 75230150 75233897 -127094450 - L1PA4 LINE L1 -8 6147 2397 3548 39 0 0 chr4 75233897 75234357 -127093990 + L1PA4 LINE L1 1952 2411 -3735 232 294 13 44 chr4 75234432 75234567 -127093780 + CT-rich Low_complexity Low_complexity 6 221 0 533 278 114 62 chr4 75235257 75235530 -127092817 - L3 LINE CR1 -1 1576 1290 4467 113 23 10 chr4 75235586 75236279 -127092068 - L1PA13 LINE L1 0 6163 5462 186 375 0 0 chr4 75236798 75236854 -127091493 - L2 LINE L2 0 3272 3217 706 206 116 11 chr4 75238199 75238388 -127089959 - MER3 DNA MER1_type 0 209 1 850 150 0 15 chr4 75238833 75238966 -127089381 + FLAM_C SINE Alu 3 133 0 1368 135 179 24 chr4 75238973 75239225 -127089122 + AluSx SINE Alu 1 291 -11 21 36 0 0 chr4 75239286 75239314 -127089033 + AT_rich Low_complexity Low_complexity 1 28 0 429 228 27 47 chr4 75239498 75239647 -127088700 - L1ME3A LINE L1 -209 5961 5816 * 523 253 5 31 chr4 75239636 75239830 -127088517 - L1ME3A LINE L1 -286 5884 5696 368 43 0 0 chr4 75239924 75239971 -127088376 - MLT2A1 LTR ERVL -291 153 107 487 171 0 17 chr4 75240118 75240235 -127088112 + (TA)n Simple_repeat Simple_repeat 2 116 0 2664 71 77 11 chr4 75240235 75240614 -127087733 - MLT2A1 LTR ERVL -40 404 1 678 253 31 27 chr4 75240648 75240873 -127087474 + MIR SINE MIR 37 262 0 410 169 0 14 chr4 75242180 75242251 -127086096 - MER112 DNA MER1_type -12 248 179 237 65 0 0 chr4 75242280 75242311 -127086036 + (TG)n Simple_repeat Simple_repeat 1 31 0 1791 158 10 20 chr4 75242652 75242956 -127085391 - AluJo SINE Alu -9 303 3 267 31 0 0 chr4 75243783 75243815 -127084532 + (CA)n Simple_repeat Simple_repeat 1 32 0 405 0 0 0 chr4 75245292 75245337 -127083010 + (TG)n Simple_repeat Simple_repeat 2 46 0 228 67 0 0 chr4 75245337 75245367 -127082980 + (TC)n Simple_repeat Simple_repeat 2 31 0 27 49 0 0 chr4 75246187 75246228 -127082119 + AT_rich Low_complexity Low_complexity 1 41 0 2045 133 33 10 chr4 75246557 75246858 -127081489 - AluSx SINE Alu -4 308 1 753 287 74 8 chr4 75247191 75247435 -127080912 - MIR SINE MIR 0 262 3 412 252 60 73 chr4 75248741 75248892 -127079455 + L2 LINE L2 3165 3313 0 274 300 5 16 chr4 75249471 75249560 -127078787 - MIR SINE MIR -118 90 2 747 215 7 0 chr4 75250918 75251062 -127077285 + MER58B DNA MER1_type 197 341 0 1091 83 0 0 chr4 75251160 75251292 -127077055 + AluSq/x SINE Alu 3 134 -178 2207 117 3 0 chr4 75251293 75251592 -127076755 + AluSx SINE Alu 1 300 -12 183 42 0 0 chr4 75251743 75251767 -127076580 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7075 52 1 3 chr4 75251768 75252911 -127075436 + L1PA7 LINE L1 5013 6152 -2 1467 267 88 43 chr4 75254153 75254743 -127073604 - MLT1G LTR MaLR -12 578 1 572 264 65 91 chr4 75254840 75255116 -127073231 + L2 LINE L2 2312 2580 -734 310 137 0 0 chr4 75255117 75255168 -127073179 - MSTD LTR MaLR 0 396 346 1447 95 0 10 chr4 75255195 75255217 -127073130 - L1M2 LINE L1 -743 5403 5382 4808 95 28 17 chr4 75255217 75255372 -127072975 - L1MA2 LINE L1 -3 6301 6149 2281 112 0 3 chr4 75255372 75255677 -127072670 - AluSx SINE Alu -8 304 1 4808 95 28 17 chr4 75255677 75256200 -127072147 - L1MA2 LINE L1 -155 6149 5612 1947 131 30 20 chr4 75256200 75256505 -127071842 - AluSq SINE Alu 0 313 6 4808 95 28 17 chr4 75256505 75256573 -127071774 - L1MA2 LINE L1 -692 5612 5546 1447 95 0 10 chr4 75256573 75256867 -127071480 - L1M2 LINE L1 -764 5382 5185 570 148 10 0 chr4 75256868 75256969 -127071378 - MSTD LTR MaLR -39 357 256 1008 274 132 23 chr4 75257002 75257555 -127070792 + L2 LINE L2 2708 3313 0 403 257 66 29 chr4 75257785 75257921 -127070426 - L2 LINE L2 0 3313 3173 189 94 0 0 chr4 75258339 75258371 -127069976 + (T)n Simple_repeat Simple_repeat 1 32 0 365 304 80 14 chr4 75258554 75258692 -127069655 + MIR SINE MIR 4 150 -112 2489 87 0 0 chr4 75259439 75259748 -127068599 - AluSc SINE Alu 0 309 1 479 191 0 11 chr4 75260057 75260151 -127068196 - Tigger7 DNA MER2_type 0 2487 2395 2153 108 17 0 chr4 75260582 75260869 -127067478 - AluSg SINE Alu -18 292 1 201 267 116 23 chr4 75261099 75261185 -127067162 + MIR SINE MIR 169 262 0 1922 144 24 3 chr4 75261450 75261742 -127066605 - AluSx SINE Alu -14 298 1 668 162 81 22 chr4 75261936 75262072 -127066275 - AluJb SINE Alu -11 301 158 21 0 0 0 chr4 75262324 75262345 -127066002 + AT_rich Low_complexity Low_complexity 1 21 0 41342 43 5 8 chr4 75262401 75268566 -127059781 + L1PA4 LINE L1 1 6148 -7 253 246 70 0 chr4 75268844 75268901 -127059446 - L2 LINE L2 -2 3270 3210 220 302 43 43 chr4 75268952 75269068 -127059279 + L2 LINE L2 3008 3123 -190 244 230 103 0 chr4 75269106 75269193 -127059154 + MER94 DNA DNA 38 133 -1 422 209 107 80 chr4 75269193 75269380 -127058967 + L2 LINE L2 3122 3313 0 207 0 0 0 chr4 75269909 75269932 -127058415 + (CA)n Simple_repeat Simple_repeat 1 23 0 229 299 56 28 chr4 75271247 75271354 -127056993 - MIR SINE MIR -80 182 73 315 164 0 0 chr4 75274469 75274530 -127053817 + (CGG)n Simple_repeat Simple_repeat 1 61 0 23 0 0 0 chr4 75274651 75274674 -127053673 + GC_rich Low_complexity Low_complexity 1 23 0 354 23 0 0 chr4 75277574 75277617 -127050730 + (CA)n Simple_repeat Simple_repeat 2 44 0 671 125 0 161 chr4 75277773 75277941 -127050406 + FAM SINE Alu 24 164 -21 1975 145 19 19 chr4 75278072 75278437 -127049910 + MER47A DNA MER2_type 2 366 0 1937 243 84 35 chr4 75279869 75280373 -127047974 - L1ME3A LINE L1 -3 6167 5607 2296 38 0 0 chr4 75280373 75280639 -127047708 - AluY SINE Alu -45 266 1 1937 243 84 35 chr4 75280639 75280940 -127047407 - L1ME3A LINE L1 -563 5607 5322 216 326 174 0 chr4 75281312 75281484 -127046863 + MIR SINE MIR 61 262 0 262 182 182 0 chr4 75281531 75281586 -127046761 + L2 LINE L2 3249 3313 0 25 31 0 0 chr4 75282210 75282242 -127046105 + AT_rich Low_complexity Low_complexity 1 32 0 222 226 0 0 chr4 75282384 75282437 -127045910 + T-rich Low_complexity Low_complexity 1 53 0 1230 117 0 17 chr4 75283869 75284048 -127044299 + AluSg/x SINE Alu 135 310 0 2215 123 0 0 chr4 75284106 75284406 -127043941 + AluSx SINE Alu 1 300 -12 307 226 75 19 chr4 75284673 75284779 -127043568 - L1MD3 LINE L1 0 7995 7884 865 20 0 0 chr4 75284809 75284910 -127043437 + L1PA5 LINE L1 6052 6152 -2 878 145 0 0 chr4 75285861 75285992 -127042355 + FLAM_C SINE Alu 11 141 -2 2271 117 0 3 chr4 75286813 75287122 -127041225 - AluSx SINE Alu -4 308 1 758 149 26 13 chr4 75287837 75287991 -127040356 + L1PA6 LINE L1 5999 6154 0 326 224 0 0 chr4 75288191 75288249 -127040098 + MIR SINE MIR 17 74 -188 966 277 64 16 chr4 75288282 75288657 -127039690 - LTR16A LTR ERVL -40 410 18 273 295 0 0 chr4 75288742 75288820 -127039527 + MIR SINE MIR 184 261 -1 243 0 0 0 chr4 75293970 75293997 -127034350 + (TTA)n Simple_repeat Simple_repeat 2 28 0 438 296 132 16 chr4 75294081 75294270 -127034077 + MIR SINE MIR 13 223 -39 1756 155 18 4 chr4 75295002 75295280 -127033067 - AluJo SINE Alu -30 282 1 2484 57 0 3 chr4 75295320 75295616 -127032731 + AluY SINE Alu 1 295 -16 258 286 68 38 chr4 75297917 75298050 -127030297 + L2 LINE L2 3164 3300 -13 180 0 0 0 chr4 75298943 75298963 -127029384 + (T)n Simple_repeat Simple_repeat 1 20 0 209 211 0 0 chr4 75299837 75299875 -127028472 + (TG)n Simple_repeat Simple_repeat 1 38 0 1920 170 36 0 chr4 75300026 75300362 -127027985 + MER7A DNA MER2_type 1 346 0 1644 174 45 45 chr4 75300783 75301157 -127027190 + MLT1A2 LTR MaLR 1 374 0 327 340 88 19 chr4 75302752 75302967 -127025380 + MIR SINE MIR 21 250 -12 2248 106 0 13 chr4 75303070 75303381 -127024966 - AluSx SINE Alu -5 307 1 249 244 37 61 chr4 75303856 75303938 -127024409 + MIR SINE MIR 12 91 -117 287 295 108 0 chr4 75304056 75304185 -127024162 - MIR SINE MIR -24 238 96 2150 110 20 3 chr4 75304458 75304757 -127023590 + AluSx SINE Alu 1 304 -8 524 231 48 20 chr4 75305809 75305956 -127022391 + MIR SINE MIR 63 213 -49 26 30 0 0 chr4 75305956 75305989 -127022358 + AT_rich Low_complexity Low_complexity 1 33 0 1544 98 4 4 chr4 75306241 75306476 -127021871 + Tigger1 DNA MER2_type 422 656 -1762 * 6728 123 88 7 chr4 75306472 75307637 -127020710 + Tigger1 DNA MER2_type 1159 2417 -1 312 272 40 40 chr4 75307669 75307842 -127020505 - L1MC5 LINE L1 -282 7679 7507 207 0 50 50 chr4 75307866 75307906 -127020441 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 4057 75 5 7 chr4 75307909 75308480 -127019867 - L1PA14 LINE L1 -24 6137 5568 747 256 184 27 chr4 75309237 75309758 -127018589 + L2 LINE L2 2720 3313 0 186 43 0 0 chr4 75310316 75310339 -127018008 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 2057 88 42 0 chr4 75310351 75310635 -127017712 - AluY SINE Alu -15 296 1 799 251 65 32 chr4 75311555 75311806 -127016541 + MIR SINE MIR 3 257 -5 521 307 110 18 chr4 75311990 75312218 -127016129 + MIR SINE MIR 3 251 -11 2344 95 0 0 chr4 75312242 75312537 -127015810 + AluSx SINE Alu 1 295 -17 228 290 0 0 chr4 75312652 75312714 -127015633 + MIR SINE MIR 187 248 -14 1073 161 6 6 chr4 75313307 75313481 -127014866 - FAM SINE Alu -1 174 1 249 194 0 45 chr4 75313977 75314044 -127014303 + (ATTG)n Simple_repeat Simple_repeat 3 66 0 240 330 46 46 chr4 75314080 75314189 -127014158 - L2 LINE L2 -35 3237 3129 233 238 168 24 chr4 75315654 75315793 -127012554 - MIR SINE MIR -63 145 37 2616 188 65 47 chr4 75315885 75316604 -127011743 - L1MD2 LINE L1 -1 6358 5627 189 0 0 0 chr4 75316985 75317006 -127011341 + (T)n Simple_repeat Simple_repeat 1 21 0 1528 188 30 26 chr4 75319574 75319878 -127008469 - AluJo SINE Alu -2 310 6 433 214 31 20 chr4 75320329 75320427 -127007920 + L2 LINE L2 3215 3313 0 802 311 108 8 chr4 75320585 75320945 -127007402 + L2 LINE L2 2007 2402 -912 744 323 158 2 chr4 75320971 75321531 -127006816 + L2 LINE L2 2650 3313 0 2002 112 3 30 chr4 75321603 75321906 -127006441 - AluSx SINE Alu -17 295 1 421 329 41 20 chr4 75322288 75322434 -127005913 - MIR SINE MIR -108 154 6 210 147 0 0 chr4 75323264 75323298 -127005049 + (TG)n Simple_repeat Simple_repeat 1 34 0 27 0 0 0 chr4 75324512 75324539 -127003808 + AT_rich Low_complexity Low_complexity 1 27 0 188 214 0 71 chr4 75327851 75327907 -127000440 + L2 LINE L2 3262 3313 0 1777 176 13 13 chr4 75328009 75328321 -127000026 + AluJb SINE Alu 1 312 0 45 35 0 35 chr4 75329860 75329945 -126998402 + AT_rich Low_complexity Low_complexity 1 82 0 258 32 0 0 chr4 75330686 75330717 -126997630 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 180 310 78 70 chr4 75331408 75331537 -126996810 + MIR SINE MIR 21 150 -58 1701 297 140 16 chr4 75332169 75333241 -126995106 - L2 LINE L2 -212 3060 1853 358 284 111 31 chr4 75333362 75333524 -126994823 - MIR3 SINE MIR -10 198 24 35 24 0 0 chr4 75334337 75334379 -126993968 + AT_rich Low_complexity Low_complexity 1 42 0 247 212 65 12 chr4 75334379 75334549 -126993798 + (TA)n Simple_repeat Simple_repeat 2 180 0 208 207 17 0 chr4 75335528 75335644 -126992703 + (TA)n Simple_repeat Simple_repeat 2 119 0 2121 119 24 7 chr4 75336781 75337074 -126991273 + AluSx SINE Alu 1 298 -14 245 296 25 12 chr4 75338126 75338207 -126990140 + MIR SINE MIR 180 261 -1 757 221 49 5 chr4 75339901 75340105 -126988242 + L1MB7 LINE L1 5971 6183 -1 586 284 34 17 chr4 75341955 75342131 -126986216 - MIR3 SINE MIR -1 207 29 814 329 138 14 chr4 75345008 75345774 -126982573 + L2 LINE L2 2454 3313 0 906 199 0 0 chr4 75346164 75346325 -126982022 + FAM SINE Alu 5 165 -10 669 232 97 5 chr4 75347864 75348049 -126980298 + MIR SINE MIR 3 204 -58 1978 56 0 0 chr4 75350040 75350291 -126978056 - L1PA4 LINE L1 0 6155 5905 236 259 56 56 chr4 75351164 75351307 -126977040 + L3b LINE CR1 1359 1501 -82 195 204 0 0 chr4 75353967 75354021 -126974326 + (CAATT)n Simple_repeat Simple_repeat 4 57 0 263 254 237 17 chr4 75354021 75354139 -126974208 - L2 LINE L2 -8 3305 3162 623 323 58 63 chr4 75354209 75354624 -126973723 - L2 LINE L2 0 3313 2901 1821 143 8 0 chr4 75354734 75355000 -126973347 + AluSx SINE Alu 45 312 0 180 0 0 0 chr4 75355255 75355275 -126973072 + (T)n Simple_repeat Simple_repeat 1 20 0 280 287 118 15 chr4 75356153 75356289 -126972058 - MIR SINE MIR -112 150 1 220 286 16 79 chr4 75356815 75356941 -126971406 - MIR SINE MIR -21 241 124 539 320 70 16 chr4 75356960 75357204 -126971143 + MIR SINE MIR 5 261 -1 310 297 11 11 chr4 75357206 75357277 -126971070 - MIR SINE MIR -155 107 34 2325 73 0 7 chr4 75357277 75357566 -126970781 - AluSq SINE Alu -25 288 2 310 297 11 11 chr4 75357566 75357585 -126970762 - MIR SINE MIR -227 35 17 514 252 36 126 chr4 75358964 75359242 -126969105 - MIR SINE MIR -8 254 2 587 262 99 16 chr4 75359483 75359674 -126968673 - MIR SINE MIR -49 213 7 566 236 71 0 chr4 75360253 75360393 -126967954 - MIR SINE MIR -44 218 69 631 271 20 0 chr4 75360984 75361135 -126967212 + MIR SINE MIR 79 232 -30 2037 145 65 51 chr4 75361150 75361578 -126966769 - Tigger2a DNA MER2_type 0 434 1 182 296 99 14 chr4 75361719 75361790 -126966557 + MER5A DNA MER1_type 6 82 -107 476 280 86 11 chr4 75361838 75362013 -126966334 + MIR3 SINE MIR 15 202 -6 357 282 86 0 chr4 75362773 75362890 -126965457 - MIR3 SINE MIR -7 201 75 689 204 12 30 chr4 75363312 75363479 -126964868 - L1MD2 LINE L1 -2 6357 6194 3782 179 68 61 chr4 75363479 75363944 -126964403 - L1MD2 LINE L1 -3 6356 5896 2034 148 13 0 chr4 75363944 75364249 -126964098 + AluJb SINE Alu 1 309 -3 3782 179 68 61 chr4 75364249 75364660 -126963687 - L1MD2 LINE L1 -463 5896 5307 260 62 0 0 chr4 75364661 75364693 -126963654 + (TTCCC)n Simple_repeat Simple_repeat 5 36 0 578 204 29 6 chr4 75364693 75364865 -126963482 + CT-rich Low_complexity Low_complexity 1 176 0 516 168 9 0 chr4 75364869 75364976 -126963371 - L1MD2 LINE L1 -842 5304 5197 * 4801 166 21 48 chr4 75364972 75366108 -126962239 - L1MA9 LINE L1 0 6312 5188 * 5058 149 44 38 chr4 75366103 75366967 -126961380 - L1MA9 LINE L1 0 6312 5444 2193 112 7 0 chr4 75366967 75367272 -126961075 - AluSx SINE Alu -5 307 1 5058 149 44 38 chr4 75367272 75367778 -126960569 - L1MA9 LINE L1 -868 5444 4942 949 216 33 7 chr4 75367774 75368047 -126960300 - L1MD2 LINE L1 -923 5223 4944 * 399 328 25 39 chr4 75368536 75368737 -126959610 + MIR3 SINE MIR 8 205 -3 180 111 0 0 chr4 75369090 75369117 -126959230 + (T)n Simple_repeat Simple_repeat 1 27 0 2174 94 31 0 chr4 75369475 75369763 -126958584 - AluSp SINE Alu -16 297 1 1754 180 21 0 chr4 75369765 75370049 -126958298 - AluJo SINE Alu -16 296 7 666 340 100 3 chr4 75371423 75371732 -126956615 - L3 LINE CR1 -7 1570 1232 237 241 11 69 chr4 75371732 75371819 -126956528 - L3 LINE CR1 -865 712 631 230 286 0 0 chr4 75372423 75372479 -126955868 - L3 LINE CR1 -1195 382 327 482 230 50 105 chr4 75373069 75373135 -126955212 - MER5A DNA MER1_type 0 189 121 2307 82 0 7 chr4 75373135 75373427 -126954920 + AluY SINE Alu 1 290 -21 482 230 50 105 chr4 75373427 75373560 -126954787 - MER5A DNA MER1_type -68 121 1 199 258 65 0 chr4 75373858 75373920 -126954427 - MIR SINE MIR -75 187 122 437 299 26 94 chr4 75373991 75374225 -126954122 - MIR SINE MIR -26 236 19 2166 107 10 0 chr4 75375586 75375877 -126952470 - AluSx SINE Alu -18 294 1 256 337 127 31 chr4 75377230 75377719 -126950628 - L2 LINE L2 -912 2402 1867 943 110 0 26 chr4 75378364 75378518 -126949829 + L1PA6 LINE L1 6002 6151 -3 284 225 12 12 chr4 75378524 75378604 -126949743 - Charlie1 DNA MER1_type -498 2263 2184 1154 137 0 6 chr4 75378625 75378793 -126949554 - AluJo SINE Alu -19 293 127 326 208 14 0 chr4 75378797 75378869 -126949478 - Charlie1 DNA MER1_type -2643 118 46 23 0 0 0 chr4 75378929 75378952 -126949395 + AT_rich Low_complexity Low_complexity 1 23 0 980 85 165 0 chr4 75379071 75379247 -126949100 - L1MA3 LINE L1 -1 6304 6100 2427 78 7 3 chr4 75380012 75380319 -126948028 - AluSg SINE Alu -2 308 1 2156 102 36 10 chr4 75380460 75380764 -126947583 + AluSx SINE Alu 1 312 0 204 40 0 0 chr4 75382806 75382831 -126945516 + (TCTCC)n Simple_repeat Simple_repeat 4 28 0 2199 124 0 3 chr4 75382831 75383138 -126945209 - AluSx SINE Alu -6 306 1 387 56 0 0 chr4 75384672 75384726 -126943621 + (CA)n Simple_repeat Simple_repeat 2 55 0 2067 143 0 0 chr4 75384760 75385060 -126943287 - AluSx SINE Alu -12 300 1 299 285 261 24 chr4 75385115 75385322 -126943025 + MIR3 SINE MIR 7 262 0 464 292 101 28 chr4 75389405 75389583 -126938764 + MIR3 SINE MIR 17 207 -1 248 230 0 14 chr4 75390928 75391002 -126937345 + CT-rich Low_complexity Low_complexity 2 74 0 453 305 153 6 chr4 75391072 75391249 -126937098 - MIR SINE MIR -7 255 53 2642 176 50 12 chr4 75391306 75391807 -126936540 - MLT2B1 LTR ERVL 0 520 1 208 225 0 0 chr4 75392199 75392239 -126936108 - L2 LINE L2 -10 3303 3264 * 511 269 187 12 chr4 75392206 75392377 -126935970 - MIR SINE MIR -11 251 51 300 348 80 0 chr4 75392392 75392504 -126935843 + MIR SINE MIR 6 126 -136 209 308 106 10 chr4 75392755 75392859 -126935488 + MIR SINE MIR 24 137 -71 * 253 309 144 66 chr4 75392858 75393114 -126935233 - L2 LINE L2 -1 3271 2996 245 296 23 57 chr4 75393105 75393193 -126935154 + L2 LINE L2 3207 3291 -22 * 799 232 53 57 chr4 75393325 75393473 -126934874 + MIR SINE MIR 1 149 -113 2373 82 0 7 chr4 75393473 75393765 -126934582 + AluSc SINE Alu 1 290 -19 799 232 53 57 chr4 75393765 75393879 -126934468 + MIR SINE MIR 149 262 0 210 326 52 62 chr4 75395135 75395328 -126933019 + L2 LINE L2 2696 2886 -428 241 120 0 213 chr4 75395399 75395474 -126932873 + L2 LINE L2 3214 3272 0 28036 108 24 26 chr4 75395600 75402115 -126926232 + L1PA8 LINE L1 6 6487 0 2333 94 26 9 chr4 75403719 75404059 -126924288 - L1PA10 LINE L1 -3 6165 5820 594 228 16 16 chr4 75404065 75404188 -126924159 - FLAM_A SINE Alu -10 123 1 384 22 0 0 chr4 75404232 75404277 -126924070 + (TG)n Simple_repeat Simple_repeat 2 46 0 344 286 94 54 chr4 75404898 75405101 -126923246 + MIR SINE MIR 1 211 -51 22 35 0 0 chr4 75405980 75406009 -126922338 + AT_rich Low_complexity Low_complexity 1 29 0 1476 224 147 57 chr4 75408347 75408980 -126919367 + LTR1B LTR ERV1 137 826 0 833 194 21 38 chr4 75408986 75409172 -126919175 - MER20 DNA MER1_type -36 183 1 4054 155 73 35 chr4 75409945 75410830 -126917517 - L1MC3 LINE L1 0 7785 6860 225 0 0 0 chr4 75410830 75410855 -126917492 + (TG)n Simple_repeat Simple_repeat 2 26 0 4054 155 73 35 chr4 75410855 75410933 -126917414 - L1MC3 LINE L1 -925 6860 6786 9487 39 0 2 chr4 75412412 75413625 -126914722 - L1P LINE L1 -1250 4896 3686 1518 207 9 54 chr4 75413733 75414066 -126914281 - MLT1A1 LTR MaLR -45 320 3 4834 224 22 53 chr4 75414068 75415226 -126913121 - MLT1A1-int LTR MaLR 0 1735 614 2024 116 0 35 chr4 75415328 75415639 -126912708 - AluSg1 SINE Alu -9 300 1 550 43 0 0 chr4 75415641 75415711 -126912636 - L1P4 LINE L1 -678 5488 5419 885 281 29 7 chr4 75415711 75415992 -126912355 + L1M4 LINE L1 3614 3900 -2246 436 261 75 6 chr4 75415993 75416154 -126912193 + L1M4 LINE L1 3926 4097 -2049 1850 102 53 81 chr4 75416155 75416478 -126911869 + THE1B LTR MaLR 3 316 -48 1831 124 0 57 chr4 75416579 75416939 -126911408 + AluY SINE Alu 1 343 0 1916 146 3 19 chr4 75417294 75417602 -126910745 + AluJb SINE Alu 1 303 -9 1046 145 0 17 chr4 75419372 75419544 -126908803 + MLT1B LTR MaLR 1 169 -221 550 170 43 0 chr4 75419644 75419738 -126908609 - MLT1C LTR MaLR -369 98 1 428 314 54 27 chr4 75420535 75420831 -126907516 + HERV16 LTR ERVL 37 340 -4656 193 347 41 0 chr4 75421974 75422072 -126906275 + MIR SINE MIR 20 121 -141 206 322 105 14 chr4 75422199 75422342 -126906005 - L3 LINE CR1 -774 803 648 313 253 32 11 chr4 75422406 75422501 -126905846 - MLT1L LTR MaLR 0 615 519 323 241 17 43 chr4 75423994 75424110 -126904237 - L1MEc LINE L1 -4027 2369 2257 235 172 0 35 chr4 75424111 75424169 -126904178 - L1MD1 LINE L1 -8 6234 6179 2966 220 35 77 chr4 75424186 75425084 -126903263 - L1MC4a LINE L1 -4 7804 5476 415 271 123 67 chr4 75425415 75425951 -126902396 + L3 LINE CR1 970 1535 -42 1655 87 0 18 chr4 75426741 75426970 -126901377 - THE1-int LTR MaLR -29 1551 1327 25 31 0 0 chr4 75427453 75427485 -126900862 + AT_rich Low_complexity Low_complexity 1 32 0 820 293 83 11 chr4 75427698 75428121 -126900226 + MER110A LTR ERV1 40 475 -2 458 335 62 22 chr4 75480736 75480915 -126847432 + MIR3 SINE MIR 17 202 -6 473 155 0 0 chr4 75481155 75481226 -126847121 - AluJb SINE Alu -195 117 47 * 505 167 0 0 chr4 75481225 75481303 -126847044 - AluJ/FLAM SINE Alu -232 80 3 277 263 32 32 chr4 75481332 75481427 -126846920 - LTR33 LTR ERVL 0 521 427 1454 207 10 27 chr4 75481517 75481817 -126846530 - AluJo SINE Alu -7 295 1 470 232 16 16 chr4 75481843 75481968 -126846379 - LTR33 LTR ERVL 0 521 397 281 286 51 10 chr4 75481985 75482083 -126846264 - LTR33 LTR ERVL -414 107 6 4404 202 33 17 chr4 75483189 75484253 -126844094 + L1MA9 LINE L1 5207 6287 -25 1533 251 62 10 chr4 75484275 75484772 -126843575 - L1MC4a LINE L1 -1053 5093 4571 714 289 99 3 chr4 75484774 75485078 -126843269 + L1ME3A LINE L1 5624 5956 -214 201 122 24 24 chr4 75485232 75485273 -126843074 + (TA)n Simple_repeat Simple_repeat 1 41 0 1831 126 10 50 chr4 75485680 75485982 -126842365 + AluSx SINE Alu 1 290 -22 4820 210 278 20 chr4 75486419 75488034 -126840313 + L1M3e LINE L1 1 2032 -4998 197 318 165 27 chr4 75488671 75488932 -126839415 + L2 LINE L2 2550 2846 -468 878 209 73 0 chr4 75488933 75489110 -126839237 + MER20 DNA MER1_type 30 219 0 302 234 113 28 chr4 75489112 75489253 -126839094 + L2 LINE L2 2804 2956 -316 238 291 0 18 chr4 75489466 75489521 -126838826 + L2 LINE L2 3203 3256 -16 234 364 30 89 chr4 75489831 75490100 -126838247 - L2 LINE L2 -12 3260 3008 510 332 48 55 chr4 75492079 75492519 -126835828 + L1MEd LINE L1 8 444 -5675 204 40 0 0 chr4 75492694 75492719 -126835628 + (TC)n Simple_repeat Simple_repeat 2 26 0 631 220 12 0 chr4 75492719 75492887 -126835460 + (TA)n Simple_repeat Simple_repeat 2 171 0 188 261 0 0 chr4 75492894 75492940 -126835407 - MIR SINE MIR -61 201 156 201 195 0 0 chr4 75493156 75493197 -126835150 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 550 329 119 7 chr4 75494049 75494326 -126834021 - L3 LINE CR1 -219 1358 1051 1904 187 26 88 chr4 75496643 75497179 -126831168 - MLT1D LTR MaLR -2 503 1 1368 249 45 9 chr4 75497181 75497515 -126830832 - L2 LINE L2 -597 2717 2372 1048 266 43 7 chr4 75497788 75498066 -126830281 - L2 LINE L2 -989 2325 2038 258 164 33 16 chr4 75498437 75498498 -126829849 - MARNA DNA Mariner -197 389 328 391 329 81 3 chr4 75498548 75498831 -126829516 + L1ME4a LINE L1 5548 5852 -269 403 256 226 0 chr4 75498834 75499033 -126829314 + L1ME4a LINE L1 5874 6117 -4 381 250 29 0 chr4 75499138 75499242 -126829105 + MARNA DNA Mariner 430 536 -50 502 259 12 36 chr4 75500281 75500447 -126827900 - MIR SINE MIR 0 262 101 385 301 97 0 chr4 75501007 75501120 -126827227 + L2 LINE L2 3149 3272 0 459 0 0 0 chr4 75501784 75501835 -126826512 + (CA)n Simple_repeat Simple_repeat 2 52 0 204 97 0 0 chr4 75501835 75501866 -126826481 + (GA)n Simple_repeat Simple_repeat 1 31 0 1179 216 0 0 chr4 75502540 75502753 -126825594 - AluJb SINE Alu -17 295 83 326 333 23 30 chr4 75502758 75502890 -126825457 - MIR SINE MIR -62 146 16 218 343 102 19 chr4 75503259 75503367 -126824980 - L2 LINE L2 0 3272 3156 388 236 9 36 chr4 75505123 75505233 -126823114 - MIR SINE MIR 0 262 156 218 54 0 27 chr4 75505879 75505916 -126822431 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 592 253 61 58 chr4 75506113 75506407 -126821940 - MLT1G1 LTR MaLR -288 261 1 334 191 0 0 chr4 75506407 75506470 -126821877 - L1MC5 LINE L1 -518 7443 7381 513 71 0 0 chr4 75506472 75506542 -126821805 + (TA)n Simple_repeat Simple_repeat 2 71 0 1540 189 14 7 chr4 75506542 75506823 -126821524 - AluSg SINE Alu -27 283 1 197 293 0 17 chr4 75507265 75507323 -126821024 - L2 LINE L2 -3 3310 3254 457 360 101 14 chr4 75507397 75507675 -126820672 + L2 LINE L2 2559 2860 -454 340 311 46 100 chr4 75507771 75508012 -126820335 + L2 LINE L2 3000 3227 -45 517 333 97 54 chr4 75508035 75508480 -126819867 - L2 LINE L2 0 3272 2809 445 321 30 124 chr4 75509114 75509615 -126818732 - L2 LINE L2 -12 3260 2807 816 250 122 31 chr4 75509659 75510091 -126818256 + L2 LINE L2 2505 3313 0 287 288 31 75 chr4 75511050 75511210 -126817137 - MIR SINE MIR -7 255 103 24 32 0 0 chr4 75513795 75513826 -126814521 + AT_rich Low_complexity Low_complexity 1 31 0 196 237 0 102 chr4 75516463 75516522 -126811825 - L2 LINE L2 -15 3298 3246 207 100 0 0 chr4 75516537 75516567 -126811780 + (ATG)n Simple_repeat Simple_repeat 2 31 0 342 67 0 0 chr4 75516895 75516940 -126811407 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr4 75519008 75519029 -126809318 + AT_rich Low_complexity Low_complexity 1 21 0 634 213 16 16 chr4 75520300 75520422 -126807925 + FLAM_A SINE Alu 2 123 -10 187 295 16 16 chr4 75521431 75521492 -126806855 - L2 LINE L2 -2 3270 3210 186 211 79 0 chr4 75521545 75521583 -126806764 + L2 LINE L2 3217 3257 -15 382 299 199 5 chr4 75522596 75522797 -126805550 + MIR SINE MIR 23 262 0 577 276 35 18 chr4 75524079 75524249 -126804098 + MIR SINE MIR 87 259 -3 26 50 0 0 chr4 75524410 75524450 -126803897 + AT_rich Low_complexity Low_complexity 1 40 0 219 167 0 0 chr4 75524851 75524893 -126803454 + GA-rich Low_complexity Low_complexity 2 43 0 260 222 0 0 chr4 75525913 75525967 -126802380 - MIR SINE MIR -108 154 101 336 125 139 0 chr4 75525978 75526050 -126802297 - L1MA9 LINE L1 -1 6311 6230 192 313 31 16 chr4 75526050 75526114 -126802233 - MIR SINE MIR -103 105 41 302 289 84 66 chr4 75526578 75526744 -126801603 + L3b LINE CR1 1411 1579 -4 2177 89 15 6 chr4 75527130 75527470 -126800877 - L1MDa LINE L1 -3710 2830 2479 818 192 26 47 chr4 75529481 75529674 -126798673 - MLT1F LTR MaLR 0 567 379 1696 104 104 4 chr4 75529691 75529959 -126798388 - MER51B LTR ERV1 -82 295 1 1674 140 11 0 chr4 75529961 75530226 -126798121 - MER51B-int LTR ERV1 -1 7815 7548 642 184 44 22 chr4 75530239 75530375 -126797972 + LTR54B LTR ERV1 3 141 -357 546 133 0 0 chr4 75530375 75530458 -126797889 + MER51-int LTR ERV1 7470 7552 -264 947 239 91 33 chr4 75530463 75530771 -126797576 - MLT1F LTR MaLR -227 368 3 212 306 118 35 chr4 75536782 75536867 -126791480 - L2 LINE L2 -14 3299 3208 7253 48 14 1 chr4 75538043 75540722 -126787625 - L1PA4 LINE L1 -1 6154 3399 297 162 59 0 chr4 75540722 75540790 -126787557 + L1 LINE L1 2429 2500 -4349 277 276 0 38 chr4 75540891 75540996 -126787351 - L1M1 LINE L1 -4382 3183 3083 7514 203 23 44 chr4 75541021 75542223 -126786124 + L1 LINE L1 3901 5050 -1798 2156 118 3 16 chr4 75542223 75542538 -126785809 + AluSx SINE Alu 1 311 -1 7514 203 23 44 chr4 75542538 75543242 -126785105 + L1 LINE L1 5050 5767 -1081 266 343 21 7 chr4 75543449 75543589 -126784758 - HAL1 LINE L1 -1714 793 652 778 261 66 43 chr4 75543674 75543737 -126784610 - HAL1 LINE L1 -2044 463 403 2297 123 43 6 chr4 75543737 75544086 -126784261 - THE1B LTR MaLR 0 364 3 778 261 66 43 chr4 75544086 75544371 -126783976 - HAL1 LINE L1 -2104 403 107 2248 179 159 76 chr4 75544402 75544776 -126783571 + L1MD3 LINE L1 6704 7046 -949 470 146 29 48 chr4 75544776 75544879 -126783468 + MLT1F1 LTR MaLR 35 135 -432 2248 179 159 76 chr4 75544879 75544969 -126783378 + L1MD3 LINE L1 7046 7127 -868 2089 116 54 25 chr4 75544969 75545323 -126783024 + THE1B LTR MaLR 1 364 0 2248 179 159 76 chr4 75545323 75545444 -126782903 + L1MD3 LINE L1 7127 7237 -758 1609 197 98 9 chr4 75545444 75545779 -126782568 + MLT1A1 LTR MaLR 1 365 0 2248 179 159 76 chr4 75545779 75546095 -126782252 + L1MD3 LINE L1 7237 7995 0 285 335 109 22 chr4 75546156 75546270 -126782077 + L2 LINE L2 2983 3086 -186 2152 133 36 30 chr4 75546270 75546632 -126781715 + THE1B LTR MaLR 1 364 0 285 335 109 22 chr4 75546632 75546747 -126781600 + L2 LINE L2 3086 3232 -40 347 380 35 0 chr4 75547820 75547962 -126780385 - L2 LINE L2 -8 3264 3118 6718 130 55 4 chr4 75548031 75549203 -126779144 + Tigger3b DNA MER2_type 1 1231 0 210 37 0 0 chr4 75549670 75549697 -126778650 + (TG)n Simple_repeat Simple_repeat 1 27 0 3661 251 29 12 chr4 75549712 75552086 -126776261 - L1M4c LINE L1 -2729 3653 1257 2411 55 13 23 chr4 75552086 75552394 -126775953 - AluY SINE Alu -2 309 5 3661 251 29 12 chr4 75552394 75552848 -126775499 - L1M4c LINE L1 -5125 1257 812 626 264 51 10 chr4 75552920 75553117 -126775230 - L1 LINE L1 -4525 1616 1412 637 335 17 4 chr4 75553118 75553348 -126774999 - L1 LINE L1 -5720 411 179 216 0 0 0 chr4 75553985 75554009 -126774338 + (TG)n Simple_repeat Simple_repeat 1 24 0 274 224 0 0 chr4 75554238 75554287 -126774060 + L2 LINE L2 3265 3313 0 307 306 36 0 chr4 75554673 75554784 -126773563 - L2 LINE L2 -198 3115 3001 643 307 15 10 chr4 75556452 75556657 -126771690 + MIR SINE MIR 47 252 -10 369 245 29 10 chr4 75557562 75557664 -126770683 + MER63A DNA MER1_type 1 104 0 284 219 14 14 chr4 75558106 75558179 -126770168 + MLT1K LTR MaLR 492 564 -24 22 0 0 0 chr4 75558280 75558302 -126770045 + AT_rich Low_complexity Low_complexity 1 22 0 1916 95 4 8 chr4 75558303 75558565 -126769782 - AluSc SINE Alu -19 290 30 853 203 18 0 chr4 75558884 75559047 -126769300 + MSTD LTR MaLR 225 390 -6 204 247 82 71 chr4 75559183 75559268 -126769079 + MIR SINE MIR 25 110 -152 198 0 0 0 chr4 75559428 75559450 -126768897 + (A)n Simple_repeat Simple_repeat 1 22 0 207 0 0 0 chr4 75560075 75560098 -126768249 + (CAA)n Simple_repeat Simple_repeat 2 24 0 207 69 0 0 chr4 75560100 75560129 -126768218 + (CCAA)n Simple_repeat Simple_repeat 4 32 0 266 318 27 18 chr4 75560685 75560795 -126767552 + MIR SINE MIR 151 261 -1 257 252 18 126 chr4 75560912 75561023 -126767324 + L2 LINE L2 3174 3272 0 21 0 0 0 chr4 75563261 75563282 -126765065 + AT_rich Low_complexity Low_complexity 1 21 0 240 328 41 70 chr4 75563298 75563469 -126764878 - LTR16C LTR ERVL -156 335 170 191 333 14 28 chr4 75563915 75563987 -126764360 - L2 LINE L2 0 3272 3202 1836 230 78 50 chr4 75564461 75565000 -126763347 - MLT2B3 LTR ERVL 0 554 1 3035 238 48 7 chr4 75565000 75565077 -126763270 - MER63C DNA MER1_type -131 929 857 27 29 0 0 chr4 75565077 75565111 -126763236 + AT_rich Low_complexity Low_complexity 1 34 0 3035 238 48 7 chr4 75565111 75565819 -126762528 - MER63C DNA MER1_type -203 857 78 288 0 0 0 chr4 75565831 75565863 -126762484 + (CA)n Simple_repeat Simple_repeat 2 33 0 497 286 45 0 chr4 75566362 75566516 -126761831 + MIR SINE MIR 58 218 -44 938 262 13 35 chr4 75566828 75567145 -126761202 + MER90 LTR ERV1 207 516 -59 1610 240 130 14 chr4 75567498 75568569 -126759778 - L1MC4 LINE L1 -142 7900 6558 793 146 24 0 chr4 75568662 75568785 -126759562 - LTR12 LTR ERV1 -234 480 355 310 191 0 0 chr4 75568785 75568853 -126759494 - LTR30 LTR ERV1 -102 620 553 380 133 118 52 chr4 75568854 75568989 -126759358 - LTR12 LTR ERV1 -429 285 142 1010 124 4 158 chr4 75568996 75569269 -126759078 - LTR12 LTR ERV1 -483 231 1 390 357 71 10 chr4 75570188 75570384 -126757963 + L2 LINE L2 2872 3079 -193 374 272 8 32 chr4 75570435 75570560 -126757787 + MIR SINE MIR 81 202 -60 765 180 8 0 chr4 75570617 75570745 -126757602 + FLAM_C SINE Alu 6 134 -9 2142 116 7 7 chr4 75570747 75571050 -126757297 + AluSx SINE Alu 2 304 -8 446 246 82 67 chr4 75571122 75571317 -126757030 - L2 LINE L2 -2 3311 3114 2296 243 37 43 chr4 75571360 75572064 -126756283 + MER21B LTR ERV1 40 739 -124 2359 155 52 9 chr4 75572113 75572557 -126755790 + L1PB4 LINE L1 5692 6154 -2 780 304 131 37 chr4 75572674 75573443 -126754904 - L2 LINE L2 -215 3057 2215 205 163 0 41 chr4 75574696 75574745 -126753602 + A-rich Low_complexity Low_complexity 6 52 0 295 105 35 0 chr4 75575288 75575345 -126753002 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 22 35 0 0 chr4 75575402 75575431 -126752916 + AT_rich Low_complexity Low_complexity 1 29 0 333 47 0 0 chr4 75575765 75575808 -126752539 + (CA)n Simple_repeat Simple_repeat 2 44 0 182 316 32 32 chr4 75575823 75575918 -126752429 - MIR SINE MIR -13 249 155 1165 132 5 0 chr4 75576148 75576345 -126752002 + L1PB1 LINE L1 3 200 -6663 6915 115 136 7 chr4 75576345 75577581 -126750766 + L1PB1 LINE L1 634 2029 -4834 33808 100 12 10 chr4 75577592 75583736 -126744611 + L1PA6 LINE L1 11 6154 0 2302 132 0 0 chr4 75583799 75584109 -126744238 - AluSg SINE Alu 0 310 1 10173 211 19 40 chr4 75584443 75584503 -126743844 + L1PB1 LINE L1 2013 2073 -4794 2009 138 48 34 chr4 75584503 75584859 -126743488 - THE1B LTR MaLR 0 364 4 9816 115 42 44 chr4 75584862 75585170 -126743177 - THE1B-int LTR MaLR 0 1580 1273 2038 115 14 20 chr4 75585170 75585466 -126742881 - AluSg SINE Alu -16 294 1 9816 115 42 44 chr4 75585466 75586740 -126741607 - THE1B-int LTR MaLR -307 1273 2 1829 164 42 33 chr4 75586743 75587102 -126741245 - THE1B LTR MaLR -2 362 1 10173 211 19 40 chr4 75587102 75589193 -126739154 + L1PB1 LINE L1 2077 4210 -2657 1898 173 0 17 chr4 75589193 75589516 -126738831 + AluSx SINE Alu 1 312 0 10173 211 19 40 chr4 75589516 75592277 -126736070 + L1PB1 LINE L1 4210 6866 -1 26 45 0 45 chr4 75592307 75592373 -126735974 + AT_rich Low_complexity Low_complexity 1 63 0 2660 199 40 62 chr4 75592490 75593199 -126735148 - LTR8A LTR ERV1 0 727 35 1876 139 3 20 chr4 75593461 75593755 -126734592 + AluJb SINE Alu 1 289 -23 477 270 180 8 chr4 75593852 75594119 -126734228 + L1ME LINE L1 4388 4700 -1446 24 53 0 0 chr4 75594123 75594161 -126734186 + AT_rich Low_complexity Low_complexity 1 38 0 592 271 124 66 chr4 75594485 75594969 -126733378 + LTR68 LTR ERV1 229 740 0 234 279 86 30 chr4 75595350 75595712 -126732635 + L1ME LINE L1 5539 5920 -201 180 121 69 0 chr4 75595781 75595839 -126732508 + (TTTAA)n Simple_repeat Simple_repeat 4 65 0 1403 174 65 42 chr4 75596185 75596541 -126731806 - LTR10A LTR ERV1 -61 548 185 266 207 52 0 chr4 75596592 75596650 -126731697 - LTR10A LTR ERV1 -548 61 1 22 0 0 0 chr4 75596747 75596769 -126731578 + AT_rich Low_complexity Low_complexity 1 22 0 748 104 123 26 chr4 75597932 75598086 -126730261 + MER4A-int LTR ERV1 4458 4626 -1320 1995 142 0 19 chr4 75598086 75598402 -126729945 - AluSx SINE Alu -2 310 1 5987 118 55 23 chr4 75598412 75599207 -126729140 + MER4A-int LTR ERV1 5479 6320 -278 2314 91 0 10 chr4 75599207 75599504 -126728843 - AluY SINE Alu -17 294 1 5987 118 55 23 chr4 75599504 75599791 -126728556 + MER4A-int LTR ERV1 6320 6596 -2 291 44 22 22 chr4 75599825 75599870 -126728477 + MER4A LTR ERV1 54 98 -566 568 159 5 128 chr4 75599887 75600089 -126728258 + MER4A LTR ERV1 275 510 -149 1530 224 57 39 chr4 75600089 75600299 -126728048 + LTR2 LTR ERV1 1 206 -243 201 74 0 0 chr4 75600299 75600326 -126728021 + (TTCTG)n Simple_repeat Simple_repeat 2 28 0 1530 224 57 39 chr4 75600326 75600556 -126727791 + LTR2 LTR ERV1 206 449 0 36064 124 41 44 chr4 75600561 75607468 -126720879 + Harlequin LTR ERV1 6 6896 0 1654 196 81 25 chr4 75607489 75607922 -126720425 + LTR2B LTR ERV1 34 490 0 348 127 482 27 chr4 75607922 75608032 -126720315 + MER4A LTR ERV1 451 664 0 3767 164 78 38 chr4 75608135 75608982 -126719365 - MER4D LTR ERV1 -22 881 1 318 158 83 0 chr4 75608987 75609107 -126719240 + (TA)n Simple_repeat Simple_repeat 1 130 0 3841 89 28 0 chr4 75609468 75610007 -126718340 - MER41A LTR ERV1 0 554 1 575 271 26 7 chr4 75610479 75610630 -126717717 - MER63A DNA MER1_type 0 210 57 366 263 0 50 chr4 75610676 75610775 -126717572 + L2 LINE L2 3219 3312 -1 186 256 0 0 chr4 75611546 75611585 -126716762 - MER5A DNA MER1_type 0 189 151 24 0 0 0 chr4 75611698 75611722 -126716625 + AT_rich Low_complexity Low_complexity 1 24 0 628 285 97 22 chr4 75612242 75612561 -126715786 + LTR16C LTR ERVL 117 459 -32 250 358 28 0 chr4 75612579 75612688 -126715659 + HERV16 LTR ERVL 1 112 -4884 1066 326 62 50 chr4 75612724 75614417 -126713930 + HERV16 LTR ERVL 603 2419 -2639 1453 266 73 14 chr4 75614475 75614967 -126713380 - L2 LINE L2 -1286 2028 1508 240 89 0 18 chr4 75615312 75615368 -126712979 - HSMAR2 DNA Mariner -1 1301 1247 7778 124 9 15 chr4 75615471 75616730 -126711617 - HSMAR2 DNA Mariner -24 1278 26 2449 73 0 0 chr4 75616730 75617031 -126711316 - AluY SINE Alu -10 301 1 7778 124 9 15 chr4 75617031 75617056 -126711291 - HSMAR2 DNA Mariner -1276 26 2 517 342 25 6 chr4 75617263 75617424 -126710923 - MIR3 SINE MIR -24 184 21 67 69 0 0 chr4 75617557 75617687 -126710660 + AT_rich Low_complexity Low_complexity 1 130 0 1487 156 151 42 chr4 75617752 75618176 -126710171 + LTR22B LTR ERVK 5 474 -18 224 254 132 35 chr4 75618295 75618409 -126709938 - MIR SINE MIR -81 181 57 483 292 144 28 chr4 75619853 75620394 -126707953 - L1M4 LINE L1 -2189 3957 3354 24 32 0 0 chr4 75620395 75620426 -126707921 + AT_rich Low_complexity Low_complexity 1 31 0 2069 155 0 0 chr4 75621294 75621603 -126706744 - AluSg SINE Alu -1 309 1 183 250 109 0 chr4 75621732 75621796 -126706551 + L2 LINE L2 3150 3220 -52 * 317 337 21 0 chr4 75621794 75621889 -126706458 - L2 LINE L2 -3 3269 3173 333 143 0 0 chr4 75622643 75622699 -126705648 - MER4D LTR ERV1 -816 56 1 438 242 30 0 chr4 75623809 75623941 -126704406 + LTR33 LTR ERVL 328 463 -58 2726 149 0 7 chr4 75623956 75624407 -126703940 - MER72 LTR ERV1 0 722 275 1968 108 44 14 chr4 75624409 75624704 -126703643 - AluSx SINE Alu -8 304 1 907 109 0 16 chr4 75624704 75624832 -126703515 - AluSx SINE Alu -17 293 168 1175 122 12 6 chr4 75624932 75625104 -126703243 - AluSx SINE Alu -139 173 1 1554 155 11 4 chr4 75625104 75625382 -126702965 - MER72 LTR ERV1 -442 280 1 581 222 24 8 chr4 75625603 75625729 -126702618 + MER115 DNA AcHobo 6 133 -560 243 0 0 0 chr4 75625892 75625919 -126702428 + (T)n Simple_repeat Simple_repeat 1 27 0 275 304 37 74 chr4 75625951 75626086 -126702261 + MER115 DNA AcHobo 405 534 -159 1817 177 109 40 chr4 75626396 75627007 -126701340 - MER39 LTR ERV1 0 707 1 538 364 110 7 chr4 75627171 75627462 -126700885 + L2 LINE L2 149 469 -2845 495 371 70 25 chr4 75627497 75627853 -126700494 + L2 LINE L2 2534 2905 -409 263 351 75 72 chr4 75628635 75628928 -126699419 + L2 LINE L2 2963 3256 -16 425 221 62 71 chr4 75629967 75630233 -126698114 - LTR48 LTR ERV1 0 787 379 594 214 105 11 chr4 75630282 75630463 -126697884 - MER34C LTR ERV1 -351 234 1 1234 182 132 4 chr4 75630483 75630741 -126697606 - AluJo SINE Alu -21 291 1 384 181 0 14 chr4 75630745 75630817 -126697530 - MER5A DNA MER1_type -115 74 4 321 222 0 0 chr4 75630970 75631033 -126697314 - MER96 DNA MER1_type? -101 74 12 22 0 0 0 chr4 75631567 75631589 -126696758 + AT_rich Low_complexity Low_complexity 1 22 0 3476 86 239 2 chr4 75631836 75632392 -126695955 + LTR12 LTR ERV1 1 688 0 2050 127 3 16 chr4 75632547 75632854 -126695493 - AluSx SINE Alu -6 306 4 21 0 0 0 chr4 75633213 75633234 -126695113 + AT_rich Low_complexity Low_complexity 1 21 0 1025 279 123 54 chr4 75633940 75634764 -126693583 - L2 LINE L2 0 3313 2456 586 313 50 44 chr4 75634765 75635149 -126693198 + MLT2F LTR ERVL 218 603 -60 3020 158 14 18 chr4 75635502 75635839 -126692508 + L1MB2 LINE L1 5608 5945 -226 1521 96 0 5 chr4 75635839 75636072 -126692275 + AluSg/x SINE Alu 84 315 0 3020 158 14 18 chr4 75636072 75636297 -126692050 + L1MB2 LINE L1 5945 6169 -2 1969 120 9 12 chr4 75636321 75636417 -126691930 + L1MB3 LINE L1 5812 5907 -276 2007 163 18 3 chr4 75636417 75636760 -126691587 - MER7A DNA MER2_type 0 346 1 1969 120 9 12 chr4 75636760 75636996 -126691351 + L1MB3 LINE L1 5907 6143 -40 385 338 71 19 chr4 75637414 75637568 -126690779 - MIR3 SINE MIR -39 169 8 536 316 80 28 chr4 75637651 75638087 -126690260 + MLT1J LTR MaLR 16 474 -37 2202 129 0 3 chr4 75638866 75639175 -126689172 - AluSc SINE Alu 0 309 2 326 321 36 0 chr4 75639292 75639404 -126688943 + MIR SINE MIR 30 145 -117 509 253 0 0 chr4 75640078 75640173 -126688174 + MER81 DNA DNA 20 114 0 219 186 0 0 chr4 75640606 75640649 -126687698 + T-rich Low_complexity Low_complexity 1 43 0 451 325 58 88 chr4 75643056 75643385 -126684962 - L2 LINE L2 -4 3268 2950 1205 141 6 0 chr4 75643407 75643584 -126684763 + AluY SINE Alu 134 311 0 443 327 13 13 chr4 75643609 75643759 -126684588 - L2 LINE L2 -498 2816 2667 4673 245 63 57 chr4 75643774 75645137 -126683210 - L1MEc LINE L1 -1569 4646 3292 1859 177 20 0 chr4 75645137 75645442 -126682905 - AluJb SINE Alu -1 311 1 4673 245 63 57 chr4 75645442 75646564 -126681783 - L1MEc LINE L1 -2923 3292 2179 32 43 0 0 chr4 75646566 75646612 -126681735 + AT_rich Low_complexity Low_complexity 1 46 0 301 316 38 23 chr4 75646628 75646761 -126681586 - L1MEc LINE L1 -4675 1721 1587 616 64 41 47 chr4 75646830 75647001 -126681346 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 560 69 101 0 chr4 75646966 75647125 -126681222 + (TA)n Simple_repeat Simple_repeat 2 176 0 * 1379 305 66 42 chr4 75647126 75648533 -126679814 - L1MEc LINE L1 -4916 1480 40 2020 110 7 30 chr4 75649391 75649691 -126678656 - AluSc SINE Alu -16 293 1 845 246 63 112 chr4 75649859 75650065 -126678282 + LTR33 LTR ERVL 24 238 -283 2250 61 0 24 chr4 75650065 75650359 -126677988 - AluY SINE Alu -24 287 1 845 246 63 112 chr4 75650359 75650672 -126677675 + LTR33 LTR ERVL 238 518 -3 1114 311 70 20 chr4 75650690 75651284 -126677063 + L2 LINE L2 2686 3313 0 1595 105 0 0 chr4 75652550 75652759 -126675588 + AluSg SINE Alu 1 209 -101 429 322 20 7 chr4 75652916 75653068 -126675279 - MIR3 SINE MIR -19 189 36 919 187 8 5 chr4 75653194 75653380 -126674967 - MLT1F LTR MaLR 0 530 356 324 114 0 0 chr4 75654246 75654290 -126674057 + (GAAAA)n Simple_repeat Simple_repeat 3 46 0 212 253 54 102 chr4 75654630 75654816 -126673531 + L2 LINE L2 2893 3069 -203 468 244 38 19 chr4 75655394 75655554 -126672793 - MIR3 SINE MIR -6 202 40 259 180 16 16 chr4 75655986 75656047 -126672300 - MER20 DNA MER1_type -25 194 134 228 208 0 21 chr4 75656698 75656746 -126671601 + MER20 DNA MER1_type 1 47 -172 2317 90 3 3 chr4 75656788 75657087 -126671260 - AluSx SINE Alu -13 299 1 2117 131 0 28 chr4 75657566 75657887 -126670460 - AluSx SINE Alu 0 312 1 360 125 0 0 chr4 75657889 75657945 -126670402 + MER3 DNA MER1_type 154 209 0 291 160 0 0 chr4 75657902 75657952 -126670395 - MER3 DNA MER1_type -119 90 41 * 512 294 99 55 chr4 75658586 75658988 -126669359 - LTR16B LTR ERVL -12 452 33 192 40 0 0 chr4 75660132 75660157 -126668190 + (CA)n Simple_repeat Simple_repeat 1 25 0 491 340 23 35 chr4 75660460 75660719 -126667628 + MIR SINE MIR 7 262 0 446 326 36 113 chr4 75661777 75662139 -126666208 - L2 LINE L2 -10 3262 2929 2370 157 44 5 chr4 75662163 75662596 -126665751 - MLT1C LTR MaLR 0 467 18 435 341 13 18 chr4 75662596 75662822 -126665525 - L2 LINE L2 -433 2881 2657 1729 160 36 0 chr4 75663255 75663558 -126664789 - AluJb SINE Alu 0 313 1 464 288 140 32 chr4 75664172 75664544 -126663803 - MLT1J LTR MaLR -56 455 44 266 265 204 0 chr4 75664571 75664669 -126663678 - MIR SINE MIR -58 150 33 2542 58 3 0 chr4 75664979 75665287 -126663060 - AluY SINE Alu -2 309 1 1483 183 62 10 chr4 75667626 75667915 -126660432 - AluJb SINE Alu -6 306 3 333 289 55 16 chr4 75668297 75668425 -126659922 - MIR SINE MIR -83 179 47 371 313 60 24 chr4 75668739 75668905 -126659442 + L2 LINE L2 3138 3309 -4 252 183 200 0 chr4 75668959 75669019 -126659328 - L2 LINE L2 -2 3311 3240 426 271 12 30 chr4 75669103 75669269 -126659078 - MLT1K LTR MaLR -57 531 369 1320 326 119 19 chr4 75669336 75670195 -126658152 - L2 LINE L2 -684 2630 1686 476 176 39 10 chr4 75670215 75670317 -126658030 - MLT1E2 LTR MaLR -181 324 220 342 305 62 0 chr4 75670382 75670510 -126657837 + L2 LINE L2 1839 1974 -1340 661 209 40 0 chr4 75670517 75670665 -126657682 - MLT1E2 LTR MaLR -460 166 13 212 288 68 0 chr4 75671827 75671886 -126656461 + L2 LINE L2 3250 3312 -1 482 276 37 8 chr4 75672874 75673008 -126655339 + MIR SINE MIR 1 138 -124 202 314 106 81 chr4 75673096 75673251 -126655096 + L2 LINE L2 1242 1392 -1922 562 256 8 15 chr4 75673251 75673384 -126654963 + MER94 DNA DNA 3 134 0 202 314 106 81 chr4 75673384 75673623 -126654724 + L2 LINE L2 1392 1646 -1668 769 199 12 6 chr4 75673684 75673855 -126654492 + MLT1D LTR MaLR 334 505 0 4638 229 69 32 chr4 75674400 75675536 -126652811 - L1M4 LINE L1 -1094 5052 3831 434 59 176 0 chr4 75675536 75675604 -126652743 + MADE1 DNA Mariner 1 80 0 4638 229 69 32 chr4 75675604 75676168 -126652179 - L1M4 LINE L1 -2315 3831 3289 340 315 109 24 chr4 75676238 75676403 -126651944 - L1ME LINE L1 -5573 957 779 268 339 9 0 chr4 75676820 75676935 -126651412 - L1ME LINE L1 -6391 149 34 360 348 114 6 chr4 75677730 75677888 -126650459 - MIR3 SINE MIR -6 202 28 223 352 38 0 chr4 75678192 75678297 -126650050 - L2 LINE L2 -14 3258 3150 319 253 171 35 chr4 75679720 75679890 -126648457 - MIR SINE MIR 0 262 70 288 359 47 0 chr4 75679997 75680103 -126648244 - MIR SINE MIR -59 149 39 447 337 20 35 chr4 75680302 75680501 -126647846 - MIR3 SINE MIR -7 201 6 258 273 0 0 chr4 75680665 75680742 -126647605 + (TA)n Simple_repeat Simple_repeat 1 77 0 270 143 0 0 chr4 75683097 75683146 -126645201 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 436 278 13 26 chr4 75683364 75683515 -126644832 + MIR SINE MIR 90 238 -24 3093 110 15 42 chr4 75683581 75684126 -126644221 - L1MA1 LINE L1 -4 6298 5769 25804 137 18 21 chr4 75684137 75687914 -126640433 - L1PA7 LINE L1 -17 6452 2604 2248 115 3 0 chr4 75687914 75688209 -126640138 + AluSx SINE Alu 1 296 -16 25804 137 18 21 chr4 75688209 75690709 -126637638 - L1PA7 LINE L1 -3865 2604 98 669 239 170 0 chr4 75690706 75690936 -126637411 - L1M4 LINE L1 -3494 2652 2384 * 216 0 0 0 chr4 75691943 75691967 -126636380 + (T)n Simple_repeat Simple_repeat 1 24 0 483 268 36 12 chr4 75692033 75692201 -126636146 - L1M2 LINE L1 -760 5552 5381 2028 147 39 0 chr4 75692221 75692554 -126635793 - MLT1A1 LTR MaLR -19 346 1 728 187 32 0 chr4 75692584 75692739 -126635608 - L1MC2 LINE L1 -10 6334 6175 6039 165 90 69 chr4 75692746 75693153 -126635194 - L1MC3 LINE L1 -191 7594 7197 272 259 12 12 chr4 75693153 75693238 -126635109 - MLT1F1 LTR MaLR -448 119 35 6039 165 90 69 chr4 75693238 75693463 -126634884 - L1MC3 LINE L1 -588 7197 6978 219 114 0 0 chr4 75693463 75693498 -126634849 + (TG)n Simple_repeat Simple_repeat 2 36 0 6039 165 90 69 chr4 75693498 75694333 -126634014 - L1MC3 LINE L1 -807 6978 6009 597 366 42 0 chr4 75694333 75694691 -126633656 - L1M4 LINE L1 -840 5306 4934 2184 119 7 0 chr4 75694724 75695018 -126633329 + AluSq SINE Alu 1 296 -17 227 304 14 43 chr4 75695206 75695413 -126632934 - L1M4 LINE L1 -1469 4677 4477 2006 123 120 6 chr4 75695671 75695996 -126632351 + THE1B LTR MaLR 3 364 0 1314 284 22 0 chr4 75696147 75696506 -126631841 - MER115 DNA AcHobo -34 659 293 22 0 0 0 chr4 75697180 75697202 -126631145 + AT_rich Low_complexity Low_complexity 1 22 0 1640 188 7 0 chr4 75698204 75698480 -126629867 + AluJo SINE Alu 2 279 -33 1058 227 127 53 chr4 75698500 75699029 -126629318 + LTR1B LTR ERV1 48 615 -211 32 26 0 0 chr4 75699235 75699274 -126629073 + AT_rich Low_complexity Low_complexity 1 39 0 509 296 23 0 chr4 75699285 75699417 -126628930 + MIR SINE MIR 36 170 -92 737 274 118 78 chr4 75699447 75699965 -126628382 + MLT1G LTR MaLR 10 590 -5 218 312 52 39 chr4 75700037 75700191 -126628156 + MIR SINE MIR 65 220 -42 6803 36 8 6 chr4 75700693 75701574 -126626773 - L1PA4 LINE L1 -1 6154 5272 11782 31 1 3 chr4 75701574 75703067 -126625280 + L1PA4 LINE L1 3753 5242 -904 460 283 9 18 chr4 75703619 75703732 -126624615 + MER5B DNA MER1_type 65 176 -2 1294 197 74 34 chr4 75704165 75704430 -126623917 + MLT2C1 LTR ERVL 1 287 -110 2239 123 0 7 chr4 75704430 75704731 -126623616 + AluSg SINE Alu 1 299 -11 1294 197 74 34 chr4 75704731 75704845 -126623502 + MLT2C1 LTR ERVL 287 395 -2 1782 134 128 18 chr4 75704877 75705205 -126623142 + THE1B LTR MaLR 1 364 0 11385 98 11 3 chr4 75705205 75706772 -126621575 + THE1B-int LTR MaLR 1 1580 0 2135 110 53 31 chr4 75706772 75707128 -126621219 + THE1B LTR MaLR 1 364 0 180 0 0 0 chr4 75707140 75707160 -126621187 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 285 341 61 15 chr4 75707900 75708032 -126620315 + MIR SINE MIR 60 197 -65 233 284 25 12 chr4 75708214 75708295 -126620052 + LTR67 LTR ERVL 114 195 -362 2214 123 3 0 chr4 75708833 75709135 -126619212 - AluSg SINE Alu -7 303 1 21 0 0 0 chr4 75709800 75709821 -126618526 + AT_rich Low_complexity Low_complexity 1 21 0 2227 82 0 0 chr4 75710365 75710644 -126617703 + AluY SINE Alu 2 280 -31 2209 55 32 55 chr4 75711832 75712140 -126616207 + AluY SINE Alu 1 301 -10 439 318 66 25 chr4 75712749 75712947 -126615400 - MIR SINE MIR -42 220 15 352 253 45 107 chr4 75713576 75713754 -126614593 + MIR3 SINE MIR 25 191 -17 588 351 116 44 chr4 75714171 75715549 -126612798 - L2 LINE L2 -258 3055 1572 308 325 6 25 chr4 75715746 75715903 -126612444 + MIR SINE MIR 105 258 -4 249 83 0 0 chr4 75717687 75717723 -126610624 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 431 291 114 59 chr4 75717818 75718124 -126610223 + L3 LINE CR1 1250 1572 -5 2267 114 0 0 chr4 75718262 75718569 -126609778 + AluSx SINE Alu 1 307 -5 703 245 129 30 chr4 75719382 75719745 -126608602 + HAL1b LINE L1 805 1203 -145 227 130 204 83 chr4 75719757 75719865 -126608482 + MER112 DNA MER1_type 67 187 -73 1314 121 0 0 chr4 75721735 75721917 -126606430 - L1PB4 LINE L1 -16 6140 5959 1208 243 45 42 chr4 75722267 75722601 -126605746 - MER58B DNA MER1_type -6 335 1 1956 133 0 0 chr4 75722809 75723131 -126605216 - AluSx SINE Alu 0 322 1 397 250 136 36 chr4 75724709 75724929 -126603418 + L1ME LINE L1 5548 5789 -332 547 327 16 48 chr4 75725225 75725240 -126603107 + MIR SINE MIR 7 21 -241 450 179 139 109 chr4 75725240 75725441 -126602906 + MER3 DNA MER1_type 2 208 -1 547 327 16 48 chr4 75725441 75725673 -126602674 + MIR SINE MIR 21 246 -16 24 91 0 0 chr4 75726374 75726440 -126601907 + AT_rich Low_complexity Low_complexity 1 66 0 4022 149 20 26 chr4 75726440 75727196 -126601151 - L1MB2 LINE L1 -7 6164 5414 617 99 0 55 chr4 75727196 75727287 -126601060 - 5S rRNA rRNA -35 86 1 837 199 0 0 chr4 75727287 75727463 -126600884 - L1MB2 LINE L1 -754 5429 5254 2272 85 0 33 chr4 75727712 75728019 -126600328 - AluY SINE Alu -12 299 3 2388 117 8 22 chr4 75728279 75728648 -126599699 + THE1B LTR MaLR 1 364 0 11920 93 1 1 chr4 75728648 75730225 -126598122 + THE1B-int LTR MaLR 1 1578 -2 2411 122 5 22 chr4 75730227 75730597 -126597750 + THE1B LTR MaLR 1 364 0 1792 172 7 3 chr4 75731660 75731951 -126596396 - AluJo SINE Alu -20 292 1 295 341 215 4 chr4 75732813 75733059 -126595288 + L3 LINE CR1 1245 1542 -35 432 305 79 17 chr4 75733844 75734021 -126594326 - MER5A DNA MER1_type -1 188 1 227 73 73 0 chr4 75735278 75735333 -126593014 + (TA)n Simple_repeat Simple_repeat 2 60 0 1886 103 10 21 chr4 75735333 75735623 -126592724 - L1PB2 LINE L1 -3 6148 5862 268 393 41 0 chr4 75735651 75735773 -126592574 + MIR SINE MIR 9 135 -127 2162 97 10 3 chr4 75736145 75736433 -126591914 - AluSc SINE Alu -19 290 1 213 178 0 0 chr4 75737417 75737462 -126590885 + CT-rich Low_complexity Low_complexity 3 47 0 295 324 116 34 chr4 75739572 75739779 -126588568 + L3 LINE CR1 1289 1512 -65 433 273 14 49 chr4 75741098 75741241 -126587106 - L2 LINE L2 0 3313 3176 26 0 0 0 chr4 75742278 75742304 -126586043 + AT_rich Low_complexity Low_complexity 1 26 0 353 268 41 0 chr4 75742308 75742405 -126585942 - MIR SINE MIR -1 261 161 5497 150 21 11 chr4 75743159 75744452 -126583895 + L1MA7 LINE L1 4980 6286 -5 31 58 0 0 chr4 75744727 75744779 -126583568 + AT_rich Low_complexity Low_complexity 1 52 0 1746 73 4 16 chr4 75745473 75745719 -126582628 + L1PA7 LINE L1 5911 6153 -1 636 266 52 65 chr4 75746053 75746301 -126582046 - MER102b DNA MER1_type -3 338 94 482 202 62 54 chr4 75746399 75746528 -126581819 + MIR SINE MIR 18 147 -115 384 22 0 0 chr4 75746560 75746605 -126581742 + (TTA)n Simple_repeat Simple_repeat 1 45 0 217 282 28 0 chr4 75746630 75746701 -126581646 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 958 317 80 7 chr4 75746819 75747267 -126581080 - L2 LINE L2 -13 3300 2820 7126 55 0 2 chr4 75747767 75749078 -126579269 + L1PA6 LINE L1 4844 6153 -1 23 33 0 0 chr4 75749182 75749212 -126579135 + AT_rich Low_complexity Low_complexity 1 30 0 340 250 88 34 chr4 75749642 75749790 -126578557 + MER103 DNA DNA 9 164 -2 201 274 55 27 chr4 75752386 75752459 -126575888 - MIR SINE MIR -76 132 58 310 325 0 18 chr4 75752518 75752632 -126575715 - MIR3 SINE MIR -12 196 85 499 335 30 0 chr4 75752734 75752937 -126575410 + MIR SINE MIR 54 262 0 362 334 153 26 chr4 75755124 75755636 -126572711 - L2 LINE L2 0 3272 2262 22 0 0 0 chr4 75756094 75756116 -126572231 + AT_rich Low_complexity Low_complexity 1 22 0 430 100 0 38 chr4 75756332 75756412 -126571935 + (GAAA)n Simple_repeat Simple_repeat 4 80 0 21 57 0 0 chr4 75756641 75756676 -126571671 + AT_rich Low_complexity Low_complexity 1 35 0 230 235 20 39 chr4 75756790 75756892 -126571455 + GA-rich Low_complexity Low_complexity 2 101 0 1364 207 30 45 chr4 75757305 75757638 -126570709 + MLT1D LTR MaLR 7 334 -171 580 246 42 33 chr4 75757640 75757855 -126570492 - L1ME LINE L1 -3591 3053 2837 335 64 0 0 chr4 75757855 75757902 -126570445 - MADE1 DNA Mariner 0 80 34 257 70 163 0 chr4 75757916 75757959 -126570388 + MADE1 DNA Mariner 28 77 -3 514 244 85 42 chr4 75757983 75758402 -126569945 - L1ME LINE L1 -3806 2838 2452 1480 55 0 0 chr4 75758452 75758633 -126569714 - L1PA3 LINE L1 -3 6152 5972 1015 31 0 0 chr4 75758633 75758761 -126569586 + L1P LINE L1 5301 5428 -727 316 293 43 14 chr4 75758821 75758961 -126569386 - L1ME LINE L1 -4387 2438 2295 278 294 0 0 chr4 75758996 75759105 -126569242 - L1ME LINE L1 -4874 1770 1662 837 229 5 0 chr4 75759153 75759363 -126568984 - L1M4 LINE L1 -1538 4608 4398 * 36358 97 10 7 chr4 75759350 75765484 -126562863 - L1PA6 LINE L1 0 6154 12 532 259 104 66 chr4 75765494 75766152 -126562195 - L1ME LINE L1 -4862 1680 1076 672 192 26 0 chr4 75766585 75766741 -126561606 - L1MB7 LINE L1 -1 6183 6024 2996 291 99 17 chr4 75766748 75767738 -126560609 + L1M4b LINE L1 12 1082 -5777 5435 96 8 0 chr4 75767756 75768515 -126559832 - L1PA10 LINE L1 0 6168 5404 1322 204 43 7 chr4 75768591 75769008 -126559339 + L1M4 LINE L1 5061 5492 -682 415 378 38 0 chr4 75769045 75769283 -126559064 - L1ME LINE L1 -6021 804 558 204 241 0 0 chr4 75769528 75769586 -126558761 + CT-rich Low_complexity Low_complexity 2 59 0 522 172 0 0 chr4 75770180 75770267 -126558080 - Tigger5 DNA MER2_type 0 2323 2237 399 208 0 13 chr4 75770463 75770540 -126557807 - Tigger5 DNA MER2_type -1 2322 2247 242 296 0 25 chr4 75770535 75770616 -126557731 + Tigger5 DNA MER2_type 2242 2320 -3 * 422 158 24 61 chr4 75770616 75770697 -126557650 - Tigger5 DNA MER2_type -2245 78 1 749 159 1 23 chr4 75771794 75772070 -126556277 - LTR22A LTR ERVK 0 458 220 436 88 0 0 chr4 75772070 75772127 -126556220 - HERVK22 LTR ERVK -4533 2304 2248 * 5919 134 39 1 chr4 75772119 75772600 -126555747 - HERVK22 LTR ERVK -5856 981 520 180 0 0 0 chr4 75772600 75772620 -126555727 + (GGA)n Simple_repeat Simple_repeat 1 20 0 5919 134 39 1 chr4 75772620 75773081 -126555266 - HERVK22 LTR ERVK -6317 520 3 2752 143 13 17 chr4 75773083 75773543 -126554804 - LTR22A LTR ERVK 0 458 1 4260 150 11 0 chr4 75773543 75774345 -126554002 - HERVK22 LTR ERVK 0 6837 3188 15849 114 2 9 chr4 75774349 75776635 -126551712 - HERVK22 LTR ERVK -2321 4516 2248 6106 132 33 1 chr4 75776627 75777108 -126551239 - HERVK22 LTR ERVK -5856 981 517 * 180 0 0 0 chr4 75777108 75777128 -126551219 + (GGA)n Simple_repeat Simple_repeat 1 20 0 6106 132 33 1 chr4 75777128 75777595 -126550752 - HERVK22 LTR ERVK -6320 517 3 2763 143 7 15 chr4 75777597 75778059 -126550288 - LTR22A LTR ERVK 0 458 1 344 252 126 17 chr4 75778426 75778545 -126549802 - L2 LINE L2 0 3313 3182 24 0 0 0 chr4 75778726 75778750 -126549597 + AT_rich Low_complexity Low_complexity 1 24 0 2099 120 0 17 chr4 75779412 75779712 -126548635 - AluSx SINE Alu -17 295 1 362 292 62 25 chr4 75780024 75780185 -126548162 - MIR SINE MIR 0 262 96 948 100 15 0 chr4 75780518 75780648 -126547699 + AluY SINE Alu 1 132 -179 6943 197 39 10 chr4 75781267 75782643 -126545704 - MER52A LTR ERV1 -1 1754 379 296 294 21 32 chr4 75782923 75783110 -126545237 - L1ME3A LINE L1 -222 5948 5764 5168 120 1 4 chr4 75783377 75783784 -126544563 + L1PB1 LINE L1 5377 5783 -368 1032 156 0 0 chr4 75783784 75783964 -126544383 + (TA)n Simple_repeat Simple_repeat 1 180 0 5168 120 1 4 chr4 75783964 75784325 -126544022 + L1PB1 LINE L1 5783 6143 -8 550 224 6 67 chr4 75785285 75785381 -126542966 - MIR SINE MIR -3 259 177 3807 133 148 13 chr4 75785381 75786147 -126542200 - MER4D LTR ERV1 -3 869 1 550 224 6 67 chr4 75786147 75786229 -126542118 - MIR SINE MIR -85 177 92 394 331 13 7 chr4 75786234 75786385 -126541962 + L2 LINE L2 2543 2694 -620 463 227 36 0 chr4 75786602 75786712 -126541635 - MLT1J LTR MaLR -7 504 391 1325 248 45 40 chr4 75786925 75787329 -126541018 - HsTC2 DNA Tc2 -1463 435 30 342 253 52 84 chr4 75787334 75787488 -126540859 + L2 LINE L2 3165 3313 0 983 214 154 10 chr4 75787592 75787891 -126540456 - MER2 DNA MER2_type -1 343 2 3221 178 45 20 chr4 75788037 75788727 -126539620 - MER67C LTR ERV1 -3 707 1 3557 134 19 20 chr4 75788834 75789429 -126538918 - MER50 LTR ERV1 -140 594 1 2390 195 19 65 chr4 75789429 75790006 -126538341 + LTR8 LTR ERV1 142 691 0 25 0 0 0 chr4 75790238 75790263 -126538084 + AT_rich Low_complexity Low_complexity 1 25 0 374 215 224 9 chr4 75790666 75790773 -126537574 + MER5B DNA MER1_type 1 130 -48 190 250 115 0 chr4 75790815 75790867 -126537480 - MER5B DNA MER1_type -118 60 3 357 197 0 28 chr4 75791859 75791930 -126536417 + MLT1K LTR MaLR 188 256 -332 397 239 26 8 chr4 75792040 75792157 -126536190 + MLT1K LTR MaLR 468 586 -2 941 162 16 49 chr4 75792376 75792561 -126535786 + AluJo SINE Alu 123 301 -11 869 353 131 24 chr4 75792666 75792849 -126535498 + L2 LINE L2 1879 2041 -1272 1734 60 0 0 chr4 75792849 75793079 -126535268 - AluY SINE Alu 0 313 84 869 353 131 24 chr4 75793079 75794172 -126534175 + L2 LINE L2 2041 3302 -11 305 291 38 0 chr4 75794181 75794260 -126534087 - MIR SINE MIR -77 185 104 2878 126 60 37 chr4 75795279 75795896 -126532451 - MER4B LTR ERV1 -10 769 1 304 227 0 53 chr4 75796749 75796824 -126531523 - MER92C LTR ERV1 0 554 484 1651 186 135 51 chr4 75796835 75797309 -126531038 - MER67D LTR ERV1 0 514 1 267 154 15 221 chr4 75797344 75797480 -126530867 - MER92B LTR ERV1 -481 155 48 231 213 0 0 chr4 75797936 75797983 -126530364 - Cheshire DNA MER1_type -1 2419 2373 300 146 42 0 chr4 75797985 75798033 -126530314 - MER66A LTR ERV1 -145 333 284 824 229 162 12 chr4 75798042 75798295 -126530052 - Cheshire DNA MER1_type -2129 291 1 276 326 75 20 chr4 75798319 75798466 -126529881 + MIR SINE MIR 51 205 -57 299 291 38 0 chr4 75798529 75798608 -126529739 - MIR SINE MIR -69 139 58 1489 174 29 50 chr4 75799711 75799762 -126528585 - L1MA4 LINE L1 -5 6295 6244 1753 156 57 30 chr4 75799762 75800096 -126528251 + MER61A LTR ERV1 1 343 0 1489 174 29 50 chr4 75800096 75800268 -126528079 - L1MA4 LINE L1 -56 6244 6079 1963 131 0 30 chr4 75800268 75800565 -126527782 - AluSx SINE Alu -24 288 1 1489 174 29 50 chr4 75800565 75800680 -126527667 - L1MA4 LINE L1 -221 6079 5963 3638 169 59 26 chr4 75800716 75801409 -126526938 - MER50 LTR ERV1 -18 716 1 323 266 120 57 chr4 75801920 75802503 -126525844 - L1M4 LINE L1 -3384 2762 2143 2764 241 29 36 chr4 75802590 75803625 -126524722 - L1ME1 LINE L1 -6 6229 5191 1807 277 81 10 chr4 75803658 75804471 -126523876 - L1ME1 LINE L1 -2260 3955 3085 2640 275 86 25 chr4 75804473 75805485 -126522862 - L1ME1 LINE L1 -4781 1615 514 2023 158 3 17 chr4 75805485 75805833 -126522514 - MER61A LTR ERV1 0 343 1 2640 275 86 25 chr4 75805833 75806042 -126522305 - L1ME1 LINE L1 -5882 514 319 578 286 60 5 chr4 75806069 75806268 -126522079 - L2 LINE L2 -1034 2280 2071 22 0 0 0 chr4 75806341 75806363 -126521984 + AT_rich Low_complexity Low_complexity 1 22 0 729 257 23 6 chr4 75806788 75806963 -126521384 - MER5B DNA MER1_type 0 178 1 2051 244 43 13 chr4 75807635 75808173 -126520174 - MER74A LTR ERVL -4 554 1 186 43 0 0 chr4 75808716 75808739 -126519608 + (CA)n Simple_repeat Simple_repeat 1 23 0 2363 154 154 15 chr4 75808748 75809282 -126519065 - L1MD1 LINE L1 -13 6229 5622 898 284 111 21 chr4 75809298 75809685 -126518662 - L2 LINE L2 -1369 1945 1524 350 243 101 54 chr4 75809706 75809854 -126518493 - HAL1 LINE L1 -1200 1307 1153 22 94 0 0 chr4 75810166 75810230 -126518117 + AT_rich Low_complexity Low_complexity 1 64 0 1142 211 112 45 chr4 75810858 75811310 -126517037 - MER31B LTR ERV1 0 485 1 10457 199 28 47 chr4 75811336 75813266 -126515081 - L1 LINE L1 -1017 5129 3164 1815 170 7 0 chr4 75813266 75813581 -126514766 - AluSx SINE Alu 0 317 1 10457 199 28 47 chr4 75813581 75814074 -126514273 - L1 LINE L1 -2982 3164 2663 381 40 0 0 chr4 75814074 75814124 -126514223 - L1PA6 LINE L1 -1 6153 6104 10457 199 28 47 chr4 75814124 75814225 -126514122 - L1 LINE L1 -3483 2663 2562 1651 185 10 3 chr4 75814225 75814522 -126513825 - AluJb SINE Alu -13 299 1 10457 199 28 47 chr4 75814522 75814717 -126513630 - L1 LINE L1 -3584 2562 2458 1252 225 43 0 chr4 75814779 75815037 -126513310 + LTR52-int LTR ERVL 3288 3556 0 1491 230 30 6 chr4 75815037 75815372 -126512975 + LTR52 LTR ERVL 1 343 -78 375 23 0 0 chr4 75815689 75815733 -126512614 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 1747 252 9 20 chr4 75816563 75817011 -126511336 + L1MA4A LINE L1 8 450 -6399 * 1973 177 11 0 chr4 75817009 75817382 -126510965 + L1MA4A LINE L1 4045 4421 -2427 1001 287 154 32 chr4 75818807 75819403 -126508944 + L2 LINE L2 2394 3127 -186 2240 116 73 14 chr4 75819403 75819747 -126508600 + THE1B LTR MaLR 1 364 0 1001 287 154 32 chr4 75819747 75819933 -126508414 + L2 LINE L2 3127 3289 -24 25762 66 5 2 chr4 75820686 75824853 -126503494 + L1PA6 LINE L1 1956 6138 -16 1672 196 52 7 chr4 75825262 75825670 -126502677 + L1MA4A LINE L1 4978 5403 -1445 * 2230 147 9 48 chr4 75825665 75826237 -126502110 + L1MA4A LINE L1 5839 6395 -610 2820 179 57 2 chr4 75826293 75826889 -126501458 + L1MA4A LINE L1 6377 7005 0 2087 124 19 3 chr4 75828747 75829054 -126499293 - MER41C LTR ERV1 -242 312 1 294 288 101 29 chr4 75829075 75829214 -126499133 - L2 LINE L2 -818 2496 2348 36 0 0 0 chr4 75829496 75829532 -126498815 + AT_rich Low_complexity Low_complexity 1 36 0 1245 149 130 48 chr4 75830200 75830515 -126497832 + MER4A LTR ERV1 1 341 -323 561 180 258 21 chr4 75830539 75830772 -126497575 + MER4C LTR ERV1 157 444 -21 324 348 0 17 chr4 75830832 75830950 -126497397 + MIR SINE MIR 38 153 -109 2210 62 0 0 chr4 75831225 75831500 -126496847 - AluY SINE Alu 0 311 37 310 278 72 0 chr4 75831640 75831737 -126496610 - MARNA DNA Mariner -342 244 141 315 0 0 0 chr4 75831820 75831855 -126496492 + (TG)n Simple_repeat Simple_repeat 2 36 0 245 291 33 11 chr4 75832152 75832258 -126496089 - MIR SINE MIR -66 142 49 25 31 0 0 chr4 75832696 75832728 -126495619 + AT_rich Low_complexity Low_complexity 1 32 0 2173 86 17 0 chr4 75833435 75833726 -126494621 + AluSp SINE Alu 1 296 -17 874 168 31 21 chr4 75834163 75834354 -126493993 + MER96B DNA MER1_type? 175 367 -50 5230 180 37 5 chr4 75834485 75836322 -126492025 - L1MB2 LINE L1 0 6171 4271 205 386 34 0 chr4 75836386 75836474 -126491873 + L3 LINE CR1 1028 1118 -459 2433 275 70 25 chr4 75837921 75838205 -126490142 - L1MB2 LINE L1 -2654 3492 3222 1780 240 70 55 chr4 75838205 75838822 -126489525 + MLT1E2 LTR MaLR 1 626 0 2433 275 70 25 chr4 75838822 75839811 -126488536 - L1MB2 LINE L1 -2924 3222 2162 1099 227 57 0 chr4 75839814 75840113 -126488234 + MER33 DNA MER1_type 1 316 -8 3242 66 9 0 chr4 75840255 75840680 -126487667 - L1PA8 LINE L1 -6 6166 5738 609 254 146 23 chr4 75840680 75840810 -126487537 - L1MEc LINE L1 -4334 2062 1949 1665 147 138 9 chr4 75840810 75841130 -126487217 - MER46B DNA MER2_type 0 236 1 609 254 146 23 chr4 75841130 75841349 -126486998 - L1MEc LINE L1 -4447 1949 1670 56 67 0 0 chr4 75841349 75841454 -126486893 + AT_rich Low_complexity Low_complexity 1 105 0 463 313 15 38 chr4 75841636 75841901 -126486446 - L1MEc LINE L1 -6116 280 22 26 0 0 0 chr4 75842267 75842293 -126486054 + AT_rich Low_complexity Low_complexity 1 26 0 407 205 0 13 chr4 75842429 75842507 -126485840 + Tigger2 DNA MER2_type 1 77 -2641 956 212 5 11 chr4 75842550 75842734 -126485613 - MER8 DNA MER2_type -56 183 1 2271 151 14 19 chr4 75843304 75843685 -126484662 - L1MA9 LINE L1 -148 6164 5784 294 29 0 0 chr4 75843685 75843720 -126484627 + (TG)n Simple_repeat Simple_repeat 2 36 0 2271 151 14 19 chr4 75843720 75843754 -126484593 - L1MA9 LINE L1 -528 5784 5751 * 11958 204 51 22 chr4 75843751 75844997 -126483350 - L1MA9 LINE L1 -835 5311 4102 1285 164 39 105 chr4 75844997 75845386 -126482961 - MLT1A1 LTR MaLR 0 365 3 11958 204 51 22 chr4 75845386 75847199 -126481148 - L1MA9 LINE L1 -2044 4102 2165 304 219 9 9 chr4 75848522 75848636 -126479711 + (TA)n Simple_repeat Simple_repeat 1 114 0 296 265 38 32 chr4 75848642 75848827 -126479520 + L1MC4 LINE L1 7123 7308 -734 2845 119 21 52 chr4 75849145 75849754 -126478593 - MER4E LTR ERV1 0 779 5 7847 117 44 8 chr4 75849757 75851334 -126477013 - MER4E-int LTR ERV1 0 6758 5080 2845 92 33 75 chr4 75851334 75851844 -126476503 + LTR21A LTR ERV1 1 489 -16 4504 108 5 11 chr4 75851857 75852498 -126475849 - MER4E-int LTR ERV1 -1684 5074 4438 3578 154 46 13 chr4 75852482 75853094 -126475253 - MER4E-int LTR ERV1 -2670 4088 3457 * 2119 172 11 35 chr4 75853998 75854433 -126473914 + MER61B LTR ERV1 1 425 0 38 81 0 0 chr4 75854566 75854653 -126473694 + AT_rich Low_complexity Low_complexity 1 87 0 264 80 0 100 chr4 75855349 75855399 -126472948 - U2 snRNA snRNA -140 48 4 2381 91 3 0 chr4 75855414 75855722 -126472625 - AluSp SINE Alu -4 309 1 200 265 20 20 chr4 75855831 75855933 -126472414 + T-rich Low_complexity Low_complexity 3 104 0 23 33 0 0 chr4 75856064 75856094 -126472253 + AT_rich Low_complexity Low_complexity 1 30 0 286 289 79 0 chr4 75856211 75856325 -126472022 - L1MEd LINE L1 -5400 719 597 1052 140 6 0 chr4 75856801 75856965 -126471382 + L1PA16 LINE L1 5993 6157 -9 21 36 0 0 chr4 75857326 75857354 -126470993 + AT_rich Low_complexity Low_complexity 1 28 0 195 42 0 0 chr4 75857717 75857741 -126470606 + (TCCC)n Simple_repeat Simple_repeat 2 25 0 5422 93 109 28 chr4 75859803 75860884 -126467463 + MER11A LTR ERVK 1 1266 0 769 144 35 56 chr4 75861702 75861888 -126466459 - MER41-int LTR ERV1 -3256 1624 768 * 3508 193 14 15 chr4 75861875 75862631 -126465716 - MER41-int LTR ERV1 -4465 1481 362 569 290 16 60 chr4 75863006 75863254 -126465093 - MER41-int LTR ERV1 -5296 650 414 2208 161 21 40 chr4 75863273 75863694 -126464653 - LTR35 LTR ERV1 0 618 206 * 2432 139 38 21 chr4 75863683 75864101 -126464246 - MER83 LTR ERV1 -23 425 1 872 232 62 0 chr4 75864101 75864300 -126464047 - LTR35 LTR ERV1 -406 212 1 21 0 0 0 chr4 75864954 75864975 -126463372 + AT_rich Low_complexity Low_complexity 1 21 0 285 322 144 6 chr4 75865030 75865204 -126463143 - MIR3 SINE MIR -7 201 4 326 321 109 18 chr4 75865284 75865449 -126462898 - MIR SINE MIR -12 250 71 2573 116 33 21 chr4 75865545 75865967 -126462380 - MSTA LTR MaLR -1 427 1 243 0 0 0 chr4 75866394 75866421 -126461926 + (TA)n Simple_repeat Simple_repeat 2 28 0 231 175 50 12 chr4 75866458 75866538 -126461809 + (TA)n Simple_repeat Simple_repeat 1 83 0 433 204 167 0 chr4 75867836 75867944 -126460403 - L1ME LINE L1 -416 5746 5621 261 206 191 0 chr4 75867978 75868041 -126460306 + L1PA16 LINE L1 6076 6150 -16 694 292 36 11 chr4 75868190 75868524 -126459823 - L1MEc LINE L1 -861 2040 1790 531 338 144 28 chr4 75868543 75869085 -126459262 - L2 LINE L2 -355 2959 2355 22 70 0 0 chr4 75869654 75869697 -126458650 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr4 75869947 75869970 -126458377 + AT_rich Low_complexity Low_complexity 1 23 0 992 101 0 0 chr4 75870526 75870655 -126457692 + AluSq/x SINE Alu 1 129 -183 1479 115 32 0 chr4 75870800 75871018 -126457329 - LTR15 LTR ERV1 -235 258 34 1118 140 12 12 chr4 75871019 75871190 -126457157 + AluSp SINE Alu 121 291 -22 234 304 38 0 chr4 75871190 75871269 -126457078 + MIR SINE MIR 150 231 -31 22 56 0 0 chr4 75871317 75871353 -126456994 + AT_rich Low_complexity Low_complexity 1 36 0 198 258 136 0 chr4 75871375 75871441 -126456906 - L2 LINE L2 -10 3303 3229 11629 179 32 11 chr4 75871453 75873752 -126454595 + L1M4c LINE L1 14 2360 -4024 1732 176 48 6 chr4 75873752 75874109 -126454238 + L1MB3 LINE L1 5810 6181 -2 2441 52 7 3 chr4 75874120 75874430 -126453917 + AluY SINE Alu 1 311 0 25 21 0 43 chr4 75874884 75874905 -126453442 + AT_rich Low_complexity Low_complexity 1 21 -24 2417 30 40 0 chr4 75874905 75875201 -126453146 - AluY SINE Alu -3 308 1 25 21 0 43 chr4 75875201 75875226 -126453121 + AT_rich Low_complexity Low_complexity 21 45 0 21 0 0 0 chr4 75876088 75876109 -126452238 + AT_rich Low_complexity Low_complexity 1 21 0 30 69 0 0 chr4 75876302 75876360 -126451987 + AT_rich Low_complexity Low_complexity 1 58 0 1952 140 35 27 chr4 75876867 75877239 -126451108 - THE1C LTR MaLR 0 375 1 711 219 112 0 chr4 75877260 75877429 -126450918 - MER5A DNA MER1_type -1 188 1 938 217 69 0 chr4 75877562 75877765 -126450582 - MIR SINE MIR -44 218 2 980 151 110 20 chr4 75877916 75878214 -126450133 + MSTA LTR MaLR 1 420 -8 5870 150 19 51 chr4 75878214 75879349 -126448998 + MSTA-int LTR MaLR 3 1100 -480 368 322 0 0 chr4 75879368 75879598 -126448749 + C-rich Low_complexity Low_complexity 1 230 0 563 201 97 7 chr4 75879699 75879853 -126448494 + MER3 DNA MER1_type 42 209 0 2212 104 0 7 chr4 75880210 75880519 -126447828 - AluSc SINE Alu -2 307 1 354 91 0 0 chr4 75880710 75880765 -126447582 + (TG)n Simple_repeat Simple_repeat 2 56 0 1200 80 6 17 chr4 75881223 75881399 -126446948 + MSTA-int LTR MaLR 1407 1580 0 2198 130 125 10 chr4 75881399 75881783 -126446564 + MSTA LTR MaLR 1 428 0 286 232 0 120 chr4 75881814 75881956 -126446391 + L1MA9 LINE L1 6174 6298 -14 640 246 30 30 chr4 75882938 75883137 -126445210 + L2 LINE L2 3115 3313 0 498 325 144 33 chr4 75883136 75883645 -126444702 + L2 LINE L2 2708 3273 -40 * 374 0 22 0 chr4 75883661 75883707 -126444640 + (TG)n Simple_repeat Simple_repeat 2 48 0 260 339 26 43 chr4 75883990 75884105 -126444242 - LTR67 LTR ERVL -298 259 147 253 333 16 16 chr4 75884138 75884264 -126444083 + MER94 DNA DNA 4 129 -5 290 98 20 0 chr4 75884824 75884875 -126443472 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 1680 163 14 0 chr4 75884875 75885151 -126443196 - AluJb SINE Alu -32 280 1 1069 138 0 0 chr4 75885160 75885320 -126443027 - AluJb SINE Alu -7 305 146 713 97 105 0 chr4 75886044 75886158 -126442189 - MER4B-int LTR ERV1 -3209 3549 3424 * 8869 112 75 46 chr4 75886147 75886773 -126441574 - MER4B-int LTR ERV1 -3663 3095 2489 1810 149 18 0 chr4 75886773 75887073 -126441274 + AluSq SINE Alu 5 309 0 8869 112 75 46 chr4 75887073 75887827 -126440520 - MER4B-int LTR ERV1 -4269 2489 2307 2132 125 0 3 chr4 75887827 75888123 -126440224 - AluSq SINE Alu -18 295 1 8869 112 75 46 chr4 75888123 75889196 -126439151 - MER4B-int LTR ERV1 -4451 2307 1267 588 248 56 12 chr4 75889168 75889329 -126439018 - MER4B-int LTR ERV1 -3623 2323 2156 * 244 196 0 0 chr4 75889392 75889438 -126438909 + L1MC4 LINE L1 6658 6703 -1339 363 229 24 0 chr4 75889438 75889521 -126438826 - L1MC4 LINE L1 -1343 6699 6615 1947 119 7 0 chr4 75889584 75889862 -126438485 + HERVK9 LTR ERVK 5151 5430 -486 776 82 0 0 chr4 75889913 75890022 -126438325 + HERVK9 LTR ERVK 5635 5730 -186 287 133 0 0 chr4 75890016 75890061 -126438286 + HERVK9 LTR ERVK 5872 5916 0 * 3377 118 8 4 chr4 75890061 75890570 -126437777 + MER9 LTR ERVK 1 511 0 5201 155 15 14 chr4 75890573 75891712 -126436635 - MER4B-int LTR ERV1 -5562 1196 1 2403 145 29 96 chr4 75891712 75892353 -126435994 - MER4B LTR ERV1 0 779 1 1302 199 66 44 chr4 75892754 75893120 -126435227 + MLT1A2 LTR MaLR 1 374 0 1974 152 7 0 chr4 75893337 75893639 -126434708 + AluSx SINE Alu 1 304 -8 227 261 0 22 chr4 75893661 75893707 -126434640 + L1M2c LINE L1 669 713 -6076 555 16 0 0 chr4 75893824 75893888 -126434459 + (TG)n Simple_repeat Simple_repeat 1 64 0 21 57 0 0 chr4 75893908 75893943 -126434404 + AT_rich Low_complexity Low_complexity 1 35 0 847 242 9 28 chr4 75894151 75894366 -126433981 + MLT1A1 LTR MaLR 75 285 -80 406 324 150 10 chr4 75895572 75895779 -126432568 - MIR SINE MIR -14 248 13 2666 214 48 29 chr4 75895785 75896471 -126431876 - L1MD2 LINE L1 0 6359 5661 4398 85 18 2 chr4 75896537 75897136 -126431211 - PABL_B LTR ERV1 -2 665 57 1914 205 11 31 chr4 75897128 75897509 -126430838 - MLT2B3 LTR ERVL -181 373 1 * 1512 206 31 10 chr4 75897517 75898080 -126430267 - L1MD2 LINE L1 -743 5403 5001 335 118 73 15 chr4 75898084 75898152 -126430195 + AluS SINE Alu 1 72 -229 23 0 0 0 chr4 75898280 75898303 -126430044 + AT_rich Low_complexity Low_complexity 1 23 0 235 368 0 23 chr4 75899755 75899842 -126428505 + LTR16A LTR ERVL 111 195 -255 2284 75 31 0 chr4 75900140 75900462 -126427885 + L1PA12 LINE L1 5837 6168 0 29 47 0 0 chr4 75900870 75900913 -126427434 + AT_rich Low_complexity Low_complexity 1 43 0 236 322 85 0 chr4 75901344 75901462 -126426885 - MER94 DNA DNA -6 128 1 238 371 9 9 chr4 75902671 75902776 -126425571 + L2 LINE L2 2921 3025 -247 1952 206 13 20 chr4 75902925 75903322 -126425025 + MSTD LTR MaLR 1 394 -2 337 322 57 8 chr4 75904243 75904387 -126423960 + MIR SINE MIR 63 211 -51 1711 132 64 0 chr4 75904387 75904668 -126423679 + AluSp SINE Alu 1 299 -14 232 295 131 33 chr4 75904846 75904968 -126423379 + L2 LINE L2 3137 3270 -2 21 0 0 0 chr4 75904979 75905000 -126423347 + AT_rich Low_complexity Low_complexity 1 21 0 759 194 136 21 chr4 75906104 75906153 -126422194 + AluJo SINE Alu 73 115 -197 180 0 0 0 chr4 75906153 75906173 -126422174 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 759 194 136 21 chr4 75906173 75906314 -126422033 + AluJo SINE Alu 115 285 -27 302 231 26 0 chr4 75906610 75906688 -126421659 + CT-rich Low_complexity Low_complexity 1 80 0 1757 102 0 31 chr4 75906826 75907080 -126421267 - AluSg SINE Alu -8 302 57 23 68 0 0 chr4 75907920 75907964 -126420383 + AT_rich Low_complexity Low_complexity 1 44 0 745 333 35 30 chr4 75908189 75908594 -126419753 + MLT1I LTR MaLR 3 409 0 322 277 92 40 chr4 75908960 75909307 -126419040 + L1M4 LINE L1 3212 3576 -2570 * 372 185 0 37 chr4 75909306 75909387 -126418960 + L1M4 LINE L1 4128 4205 -1941 758 150 8 0 chr4 75909491 75909618 -126418729 + MER41C LTR ERV1 427 554 0 197 363 20 0 chr4 75909665 75909767 -126418580 + L2 LINE L2 2571 2674 -640 334 273 159 45 chr4 75909880 75910056 -126418291 - HAL1 LINE L1 -579 1928 1733 2029 106 38 0 chr4 75910109 75910401 -126417946 - AluSc SINE Alu -4 305 3 311 246 7 82 chr4 75910487 75910658 -126417689 - HAL1b LINE L1 -854 494 352 21 0 0 0 chr4 75910935 75910956 -126417391 + AT_rich Low_complexity Low_complexity 1 21 0 575 309 8 30 chr4 75911066 75911328 -126417019 + L1MEd LINE L1 956 1211 -4908 185 338 20 73 chr4 75911439 75911590 -126416757 + L2 LINE L2 2976 3118 -154 954 227 10 5 chr4 75912035 75912238 -126416109 - L1PB4 LINE L1 -14 6142 5939 23 0 0 0 chr4 75912345 75912368 -126415979 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 75913166 75913188 -126415159 + AT_rich Low_complexity Low_complexity 1 22 0 2269 182 29 14 chr4 75913188 75913677 -126414670 - L1MA7 LINE L1 -2 6289 5794 385 220 13 19 chr4 75913696 75913855 -126414492 + (TA)n Simple_repeat Simple_repeat 2 159 0 254 275 22 11 chr4 75913855 75913946 -126414401 - L1MC4 LINE L1 -1339 6703 6612 244 143 12 48 chr4 75913946 75914030 -126414317 + (TA)n Simple_repeat Simple_repeat 1 81 0 3222 141 11 25 chr4 75914032 75914544 -126413803 - L1MA7 LINE L1 -503 5788 5291 2418 123 19 16 chr4 75914544 75914918 -126413429 - THE1C LTR MaLR 0 375 1 3222 141 11 25 chr4 75914918 75915120 -126413227 - L1MA7 LINE L1 -1000 5291 5088 2836 175 8 103 chr4 75915124 75915908 -126412439 + L1 LINE L1 4151 4859 -1287 205 171 0 0 chr4 75916240 75916275 -126412072 + T-rich Low_complexity Low_complexity 2 36 0 225 108 0 0 chr4 75917375 75917412 -126410935 + (TG)n Simple_repeat Simple_repeat 2 38 0 13573 154 19 103 chr4 75917880 75921173 -126407174 + L1PA8 LINE L1 5 3021 -3125 593 97 0 21 chr4 75921190 75921272 -126407075 - L1P3 LINE L1 -4792 1669 1588 15334 111 3 4 chr4 75921272 75923419 -126404928 + L1PA8 LINE L1 3032 5178 -994 225 0 0 0 chr4 75923419 75923444 -126404903 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 15334 111 3 4 chr4 75923444 75924437 -126403910 + L1PA8 LINE L1 5178 6171 -1 21 36 0 0 chr4 75924888 75924916 -126403431 + AT_rich Low_complexity Low_complexity 1 28 0 4092 231 38 20 chr4 75925213 75926484 -126401863 + L1MC/D LINE L1 4153 5442 -803 249 240 178 39 chr4 75927477 75927606 -126400741 - MIR SINE MIR -50 212 66 1513 189 328 36 chr4 75927841 75928316 -126400031 - LTR18B LTR ERVL 0 614 1 236 184 143 5 chr4 75928501 75928578 -126399769 - LTR67 LTR ERVL 0 557 444 381 145 84 0 chr4 75928606 75928683 -126399664 - MER3 DNA MER1_type 0 209 125 714 161 54 0 chr4 75928683 75928795 -126399552 + FLAM_C SINE Alu 1 118 -15 661 211 37 12 chr4 75928819 75928980 -126399367 - MER3 DNA MER1_type -44 165 1 256 332 138 26 chr4 75929529 75929797 -126398550 + L2 LINE L2 2238 2535 -779 246 262 41 66 chr4 75930083 75930205 -126398142 + MER5B DNA MER1_type 30 148 -30 330 26 0 0 chr4 75930327 75930366 -126397981 + (TG)n Simple_repeat Simple_repeat 1 39 0 10297 129 24 7 chr4 75930749 75932368 -126395979 + L1P LINE L1 10 1655 -4491 1954 107 86 0 chr4 75933067 75933347 -126395000 - AluSx SINE Alu -8 304 1 21 0 0 0 chr4 75933658 75933679 -126394668 + AT_rich Low_complexity Low_complexity 1 21 0 1218 290 16 42 chr4 75933918 75934297 -126394050 - LTR33 LTR ERVL -10 511 143 1838 165 190 29 chr4 75934502 75934723 -126393624 - L1MC3 LINE L1 -689 7096 6912 207 100 0 0 chr4 75934723 75934753 -126393594 + (TG)n Simple_repeat Simple_repeat 1 30 0 1838 165 190 29 chr4 75934753 75935021 -126393326 - L1MC3 LINE L1 -873 6912 6528 304 247 0 13 chr4 75935267 75935344 -126393003 - L1MCa LINE L1 -4362 2064 1989 1940 165 8 37 chr4 75937154 75937530 -126390817 + MLT1A1 LTR MaLR 1 365 0 288 297 69 49 chr4 75937597 75937944 -126390403 - L1M4 LINE L1 -770 5376 5023 443 273 70 61 chr4 75938085 75938514 -126389833 - L1M4 LINE L1 -1448 4698 4266 304 299 57 45 chr4 75938650 75938827 -126389520 - MLT1J LTR MaLR -95 416 238 340 341 102 37 chr4 75939488 75939898 -126388449 - L1M4 LINE L1 -2153 3993 3557 * 577 322 81 53 chr4 75939884 75940353 -126387994 - L1M4 LINE L1 -1751 4395 3914 473 322 122 8 chr4 75940425 75940779 -126387568 - L1M4 LINE L1 -2389 3757 3364 10894 34 5 0 chr4 75940933 75942246 -126386101 - L1P LINE L1 -860 5286 3968 538 42 0 0 chr4 75942246 75942310 -126386037 + L1PA5 LINE L1 6084 6154 0 254 146 0 0 chr4 75942570 75942611 -126385736 - L1ME LINE L1 -287 5883 5843 353 284 40 9 chr4 75942627 75942849 -126385498 - L1M4 LINE L1 -3180 2966 2738 1090 39 0 0 chr4 75942889 75943019 -126385328 + AluY SINE Alu 165 294 -17 271 302 121 9 chr4 75943334 75943566 -126384781 - L1M4 LINE L1 -3756 2390 2133 27 106 0 0 chr4 75943567 75943671 -126384676 + AT_rich Low_complexity Low_complexity 1 104 0 33 0 0 0 chr4 75944124 75944157 -126384190 + AT_rich Low_complexity Low_complexity 1 33 0 1540 102 9 5 chr4 75944170 75944385 -126383962 - AluY SINE Alu -14 297 82 243 288 25 0 chr4 75944454 75944534 -126383813 - L1M4 LINE L1 -3468 2678 2597 22 35 0 0 chr4 75945900 75945929 -126382418 + AT_rich Low_complexity Low_complexity 1 29 0 722 231 164 0 chr4 75946532 75946686 -126381661 + L1MC4 LINE L1 6876 7003 -1039 2324 115 0 0 chr4 75946686 75946998 -126381349 + AluSx SINE Alu 1 312 0 722 231 164 0 chr4 75946998 75947099 -126381248 + L1MC4 LINE L1 7003 7173 -869 465 238 24 0 chr4 75947098 75947224 -126381123 + L1MC4 LINE L1 7911 8039 -3 * 2029 134 10 0 chr4 75947427 75947734 -126380613 + AluSg SINE Alu 1 310 0 1731 175 24 0 chr4 75948705 75949002 -126379345 - AluJo SINE Alu -8 304 1 1882 195 24 0 chr4 75949079 75949453 -126378894 - L1MC3 LINE L1 -111 7674 7292 23 33 0 0 chr4 75950062 75950092 -126378255 + AT_rich Low_complexity Low_complexity 1 30 0 3534 149 37 92 chr4 75950406 75951179 -126377168 - MER44D DNA MER2_type -6 599 1 5396 36 4 2 chr4 76001365 76002460 -126325887 - L1P2 LINE L1 -363 5792 4694 2092 210 18 2 chr4 76002562 76003058 -126325289 - L1 LINE L1 -1866 4280 3777 7415 36 9 0 chr4 76003058 76004378 -126323969 - L1PA3 LINE L1 0 6155 4828 12288 36 1 2 chr4 76004478 76006076 -126322271 + L1P LINE L1 2759 4354 -1792 2067 52 0 8 chr4 76006176 76006428 -126321919 - AluY SINE Alu -61 250 1 2596 202 16 22 chr4 76006451 76007005 -126321342 - MER68 LTR ERV1 -11 551 1 825 241 30 4 chr4 76007101 76007337 -126321010 + L1MC4a LINE L1 7116 7357 -451 251 317 174 6 chr4 76008131 76008298 -126320049 - L2 LINE L2 -96 3217 3023 8253 53 2 1 chr4 76008307 76009272 -126319075 - LTR5 LTR ERVK -3 966 1 1590 184 195 89 chr4 76009664 76010397 -126317950 - LTR1B LTR ERV1 -15 811 1 2181 16 0 0 chr4 76010438 76010686 -126317661 + L1PA2 LINE L1 5904 6151 -4 1693 115 3 3 chr4 76010724 76011019 -126317328 + MER61-int LTR ERV1 1879 2173 -3044 5860 108 8 17 chr4 76011079 76012956 -126315391 - L1PA13 LINE L1 0 6163 4288 2084 137 3 0 chr4 76013063 76013363 -126314984 + AluSx SINE Alu 1 301 -11 1722 272 102 30 chr4 76013388 76014419 -126313928 - HAL1 LINE L1 -108 2399 1295 189 0 0 0 chr4 76015004 76015025 -126313322 + (GGGTG)n Simple_repeat Simple_repeat 5 25 0 2237 137 94 5 chr4 76015494 76015887 -126312460 - MSTA LTR MaLR 0 428 1 572 266 34 45 chr4 76016081 76016152 -126312195 - MER5B DNA MER1_type 0 178 108 2161 153 127 0 chr4 76016152 76016530 -126311817 + MSTB LTR MaLR 1 426 0 572 266 34 45 chr4 76016530 76016635 -126311712 - MER5B DNA MER1_type -70 108 4 1226 123 71 5 chr4 76017789 76018000 -126310347 + MER6 DNA MER2_type 641 865 0 1377 176 0 28 chr4 76018000 76018210 -126310137 + MER67C LTR ERV1 435 636 -74 7461 31 0 0 chr4 76018210 76019255 -126309092 - L1PA4 LINE L1 -1 6154 5106 1377 176 0 28 chr4 76019255 76019328 -126309019 + MER67C LTR ERV1 636 710 0 17708 156 53 34 chr4 76019371 76022720 -126305627 + L1M1 LINE L1 13 3423 -4142 2656 97 31 14 chr4 76022720 76023167 -126305180 + L1MA1 LINE L1 5869 6322 0 201 74 0 0 chr4 76023652 76023679 -126304668 + (TTTC)n Simple_repeat Simple_repeat 1 27 0 1908 132 50 9 chr4 76024365 76024707 -126303640 - L1PA16 LINE L1 -4 6162 5807 22978 54 2 3 chr4 76024808 76027687 -126300660 - L1P LINE L1 -3262 2884 8 2367 220 5 17 chr4 76027698 76028290 -126300057 - L1 LINE L1 -2358 3788 3204 25 31 0 0 chr4 76029157 76029189 -126299158 + AT_rich Low_complexity Low_complexity 1 32 0 281 299 132 0 chr4 76030117 76030261 -126298086 - MIR SINE MIR -7 255 93 790 94 17 0 chr4 76030268 76030385 -126297962 + MER4E LTR ERV1 1 119 -647 2020 113 103 8 chr4 76031009 76031376 -126296971 + LTR7 LTR ERV1 1 450 0 5338 82 14 18 chr4 76034065 76034645 -126293702 + MER4E LTR ERV1 1 570 -196 2231 102 10 0 chr4 76034645 76034950 -126293397 - AluSp SINE Alu -5 308 1 5338 82 14 18 chr4 76034950 76035137 -126293210 + MER4E LTR ERV1 570 756 -10 941 251 97 93 chr4 76035451 76035954 -126292393 + MLT1D LTR MaLR 1 505 0 192 40 0 0 chr4 76036339 76036364 -126291983 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 28 29 0 0 chr4 76036746 76036781 -126291566 + AT_rich Low_complexity Low_complexity 1 35 0 242 325 58 64 chr4 76037111 76037299 -126291048 + MIR SINE MIR 20 206 -56 490 308 81 20 chr4 76037813 76038060 -126290287 - MLT1K LTR MaLR -8 580 319 406 335 52 0 chr4 76039514 76039669 -126288678 - MIR SINE MIR 0 262 100 207 311 91 30 chr4 76039876 76040008 -126288339 + MIR SINE MIR 67 206 -56 227 373 0 0 chr4 76041028 76041087 -126287260 + MIR SINE MIR 53 111 -151 202 271 35 59 chr4 76041141 76041226 -126287121 - MIR3 SINE MIR -5 203 121 4985 37 3 11 chr4 76041227 76041846 -126286501 + L1PA4 LINE L1 5542 6155 0 196 414 75 8 chr4 76042997 76043130 -126285217 - L2 LINE L2 -2 3270 3129 199 189 0 0 chr4 76044727 76044764 -126283583 + L2 LINE L2 2919 2955 -317 215 154 0 39 chr4 76046045 76046097 -126282250 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 254 295 16 16 chr4 76046156 76046217 -126282130 - MIR SINE MIR -193 69 9 27 29 0 0 chr4 76046228 76046262 -126282085 + AT_rich Low_complexity Low_complexity 1 34 0 495 225 69 110 chr4 76046462 76046680 -126281667 - LTR16A1 LTR ERVL -2 455 247 293 318 60 19 chr4 76047941 76048259 -126280088 + L1M4 LINE L1 4668 4998 -1148 757 256 157 33 chr4 76048466 76048860 -126279487 + L1MC5 LINE L1 6968 7410 -551 518 259 54 18 chr4 76048940 76049164 -126279183 + L1M4 LINE L1 3547 3778 -2368 1737 151 38 41 chr4 76049530 76049849 -126278498 + THE1B LTR MaLR 1 318 -46 2077 101 15 30 chr4 76049949 76050277 -126278070 - L1P4 LINE L1 -388 5778 5456 * 7261 223 29 5 chr4 76050273 76052029 -126276318 + L1 LINE L1 3570 5366 -780 263 317 41 62 chr4 76052577 76052722 -126275625 + MER5A DNA MER1_type 46 187 -2 212 299 259 28 chr4 76052982 76053233 -126275114 + L3 LINE CR1 980 1288 -289 190 291 63 13 chr4 76053545 76053624 -126274723 + L3 LINE CR1 1494 1576 -1 191 322 91 33 chr4 76055087 76055208 -126273139 - MIR SINE MIR -21 241 114 185 226 81 65 chr4 76055191 76055253 -126273094 + MIR SINE MIR 179 241 -21 * 225 0 0 0 chr4 76055489 76055514 -126272833 + (TG)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr4 76055607 76055631 -126272716 + AT_rich Low_complexity Low_complexity 1 24 0 220 287 35 35 chr4 76055952 76056039 -126272308 - MIR SINE MIR -11 251 165 318 310 97 0 chr4 76056968 76057081 -126271266 + MER5A DNA MER1_type 60 183 -6 239 385 78 18 chr4 76057491 76057657 -126270690 - MIR3 SINE MIR -17 191 16 4154 77 23 0 chr4 76057949 76058508 -126269839 + L1PA8 LINE L1 5586 6157 -15 34 0 0 0 chr4 76058534 76058568 -126269779 + AT_rich Low_complexity Low_complexity 1 34 0 2788 115 65 18 chr4 76058902 76059346 -126269001 - MER52C LTR ERV1 0 1278 814 2669 88 11 0 chr4 76059346 76059697 -126268650 - THE1A LTR MaLR 0 355 1 10002 110 78 3 chr4 76059697 76061165 -126267182 - THE1A-int LTR MaLR -1 1579 1 2646 99 3 0 chr4 76061165 76061519 -126266828 - THE1A LTR MaLR 0 355 1 1586 92 22 0 chr4 76061522 76061749 -126266598 + L1PA13 LINE L1 5930 6161 -2 6938 185 84 59 chr4 76062403 76063931 -126264416 - MER52A LTR ERV1 0 1755 189 365 319 176 29 chr4 76064042 76064321 -126264026 - L1M2 LINE L1 -5761 1088 769 238 238 32 0 chr4 76064349 76064412 -126263935 - MER52A LTR ERV1 -1690 65 1 315 49 0 0 chr4 76065466 76065507 -126262840 + (TG)n Simple_repeat Simple_repeat 1 41 0 201 39 0 0 chr4 76065506 76065532 -126262815 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 1449 210 67 37 chr4 76065609 76066013 -126262334 + MLT1D LTR MaLR 44 459 -46 1137 224 59 3 chr4 76066017 76066307 -126262040 - L1MC4a LINE L1 -1225 6583 6278 188 310 35 0 chr4 76068561 76068619 -126259728 + L2 LINE L2 3254 3313 0 580 277 17 28 chr4 76068651 76068828 -126259519 - MIR SINE MIR -12 250 76 22 70 0 0 chr4 76069267 76069310 -126259037 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chr4 76069480 76069511 -126258836 + AT_rich Low_complexity Low_complexity 1 31 0 197 211 18 0 chr4 76069558 76069615 -126258732 + (TA)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chr4 76070144 76070166 -126258181 + AT_rich Low_complexity Low_complexity 1 22 0 1024 231 82 51 chr4 76070823 76071213 -126257134 - MLT1D LTR MaLR 0 505 104 271 103 0 0 chr4 76071213 76071252 -126257095 + 5S rRNA rRNA 1 39 -82 * 488 214 76 41 chr4 76071226 76071371 -126256976 - MLT1D LTR MaLR -353 152 3 279 0 0 0 chr4 76072253 76072284 -126256063 + (TG)n Simple_repeat Simple_repeat 2 32 0 376 306 65 9 chr4 76072847 76072955 -126255392 + L2 LINE L2 3200 3313 0 2172 123 3 0 chr4 76073830 76074138 -126254209 - AluSx SINE Alu -3 309 1 180 0 0 0 chr4 76074428 76074448 -126253899 + (A)n Simple_repeat Simple_repeat 1 20 0 254 340 170 16 chr4 76074616 76074810 -126253537 - MIR SINE MIR -21 241 18 287 273 13 0 chr4 76075083 76075160 -126253187 + L2 LINE L2 3186 3263 -9 3184 286 70 49 chr4 76076385 76077155 -126251192 + L2 LINE L2 1380 2133 -1181 747 238 61 0 chr4 76077155 76077319 -126251028 + FAM SINE Alu 1 174 -1 3184 286 70 49 chr4 76077319 76078050 -126250297 + L2 LINE L2 2133 2912 -402 3147 26 5 0 chr4 76078057 76078434 -126249913 - L1PA4 LINE L1 0 6155 5777 1236 113 28 68 chr4 76078889 76079137 -126249210 - L1MA3 LINE L1 0 6305 6068 1335 160 72 97 chr4 76079139 76079458 -126248889 + AluJb SINE Alu 1 311 -1 296 314 92 31 chr4 76079498 76079727 -126248620 - HAL1 LINE L1 -1656 851 609 343 303 49 43 chr4 76079731 76079893 -126248454 - HAL1 LINE L1 -1934 573 411 21 0 0 0 chr4 76080304 76080325 -126248022 + AT_rich Low_complexity Low_complexity 1 21 0 527 345 69 8 chr4 76080680 76080926 -126247421 + MIR SINE MIR 2 262 0 24484 65 5 2 chr4 76081328 76085365 -126242982 - L1PA6 LINE L1 -4 6150 2109 1510 187 0 4 chr4 76085365 76085627 -126242720 - L1P3 LINE L1 -6191 270 10 186 43 0 0 chr4 76085844 76085867 -126242480 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 224 346 106 71 chr4 76085868 76086264 -126242083 - L2 LINE L2 -17 3255 2846 1739 223 73 49 chr4 76086277 76086730 -126241617 - MLT2B1 LTR ERVL -56 464 1 554 339 117 4 chr4 76086734 76086973 -126241374 + LTR16C LTR ERVL 1 266 -225 580 270 138 78 chr4 76087038 76087386 -126240961 - MLT1G1 LTR MaLR -2 593 185 279 287 174 0 chr4 76087413 76087528 -126240819 - MLT1G1 LTR MaLR -432 135 1 251 207 0 52 chr4 76087542 76087600 -126240747 + LTR16C LTR ERVL 435 489 -2 509 341 114 62 chr4 76087602 76088135 -126240212 + L2 LINE L2 2230 2790 -524 21 71 0 0 chr4 76088135 76088177 -126240170 + AT_rich Low_complexity Low_complexity 1 42 0 334 246 12 0 chr4 76088233 76088400 -126239947 + (TA)n Simple_repeat Simple_repeat 2 170 0 532 269 54 27 chr4 76089149 76089335 -126239012 - MLT1H1 LTR MaLR -17 538 348 227 228 65 22 chr4 76089459 76089548 -126238799 - MLT1F LTR MaLR -240 169 52 1764 193 91 30 chr4 76092080 76092510 -126235837 + MSTB2 LTR MaLR 1 456 -1 1886 125 19 50 chr4 76092563 76092744 -126235603 - AluSx SINE Alu -2 310 142 2492 63 0 3 chr4 76092744 76093045 -126235302 - AluY SINE Alu -11 300 1 1886 125 19 50 chr4 76093045 76093183 -126235164 - AluSx SINE Alu -170 142 1 194 285 113 54 chr4 76093959 76094145 -126234202 + L2 LINE L2 3114 3310 -3 439 258 66 14 chr4 76094305 76094469 -126233878 + MIR SINE MIR 24 191 -63 400 315 98 22 chr4 76094582 76094766 -126233581 - MIR SINE MIR -33 229 32 315 183 58 29 chr4 76094854 76094958 -126233389 - L1ME4a LINE L1 -3 6118 6012 246 176 135 27 chr4 76095034 76095108 -126233239 - L1ME4a LINE L1 -456 5665 5584 21 36 0 0 chr4 76095113 76095141 -126233206 + AT_rich Low_complexity Low_complexity 1 28 0 648 328 105 19 chr4 76095388 76095919 -126232428 + L2 LINE L2 2670 3258 -14 35 63 0 0 chr4 76095949 76096012 -126232335 + AT_rich Low_complexity Low_complexity 1 63 0 426 39 0 0 chr4 76096051 76096103 -126232244 + (TAAAA)n Simple_repeat Simple_repeat 5 56 0 355 325 83 53 chr4 76096284 76096400 -126231947 - L1MC/D LINE L1 -2029 5779 5668 8460 50 22 2 chr4 76096400 76097450 -126230897 - MER11C LTR ERVK 0 1071 1 355 325 83 53 chr4 76097450 76097672 -126230675 - L1MC/D LINE L1 -2140 5668 5431 810 257 40 10 chr4 76098100 76098302 -126230045 + MER58A DNA MER1_type 1 208 -16 525 257 35 80 chr4 76098380 76098596 -126229751 - MLT1J LTR MaLR -235 215 31 1930 228 15 55 chr4 76098703 76099229 -126229118 + MLT1D LTR MaLR 1 505 0 2514 239 46 76 chr4 76099234 76100118 -126228229 + MLT1D-int LTR MaLR 6 863 -508 183 333 71 28 chr4 76100282 76100423 -126227924 + L2 LINE L2 3167 3313 0 356 275 66 0 chr4 76100959 76101091 -126227256 - MIR SINE MIR -63 145 52 451 279 41 20 chr4 76101095 76101242 -126227105 - MIR SINE MIR -9 253 104 3381 126 50 2 chr4 76101493 76101995 -126226352 + MER1A DNA MER1_type 2 527 0 219 392 8 23 chr4 76102131 76102261 -126226086 - MIR SINE MIR -113 149 22 37687 94 39 10 chr4 76102300 76108250 -126220097 - L1PA16 LINE L1 -8 6158 14 463 261 265 24 chr4 76108310 76108559 -126219788 + L2 LINE L2 3005 3313 0 226 250 16 0 chr4 76113037 76113101 -126215246 + GA-rich Low_complexity Low_complexity 2 66 0 405 0 0 0 chr4 76114547 76114592 -126213755 + (TG)n Simple_repeat Simple_repeat 2 46 0 370 352 63 87 chr4 76115060 76115441 -126212906 + L2 LINE L2 2897 3268 -4 381 244 134 56 chr4 76117017 76117267 -126211080 - L1ME LINE L1 -455 5707 5434 1695 199 0 0 chr4 76117359 76117651 -126210696 + AluJb SINE Alu 5 296 -16 340 24 0 0 chr4 76117844 76117885 -126210462 - L1P LINE L1 -1705 4441 4401 2876 24 0 0 chr4 76117886 76118217 -126210130 + L1PA3 LINE L1 5822 6152 -3 551 349 90 23 chr4 76118255 76118721 -126209626 - L2 LINE L2 -245 3068 2576 1891 99 65 4 chr4 76119087 76119349 -126208998 + AluSg SINE Alu 3 280 -30 301 335 117 6 chr4 76119481 76119660 -126208687 - MIR SINE MIR -62 200 2 705 350 80 19 chr4 76121223 76121988 -126206359 + L2 LINE L2 895 1759 -1555 423 242 0 0 chr4 76122095 76122190 -126206157 - MER103 DNA DNA -48 118 24 522 299 154 31 chr4 76123337 76123762 -126204585 - L1ME2 LINE L1 -323 5841 5358 1880 140 32 46 chr4 76123767 76124138 -126204209 + THE1C LTR MaLR 10 375 0 258 213 125 25 chr4 76124168 76124328 -126204019 - L1ME2 LINE L1 -821 5325 5150 385 330 54 56 chr4 76124573 76124946 -126203401 - L1MC4a LINE L1 -1869 5939 5568 1838 146 16 77 chr4 76124974 76125290 -126203057 + THE1A LTR MaLR 1 335 -20 3161 87 18 5 chr4 76125290 76125728 -126202619 + MLT2A1 LTR ERVL 1 444 0 1838 146 16 77 chr4 76125728 76125747 -126202600 + THE1A LTR MaLR 335 314 -41 2175 121 3 7 chr4 76125747 76126054 -126202293 - AluSx SINE Alu -6 306 1 1838 146 16 77 chr4 76126054 76126095 -126202252 + THE1A LTR MaLR 313 355 0 11034 107 22 1 chr4 76126099 76127642 -126200705 + THE1A-int LTR MaLR 5 1580 0 1525 158 145 7 chr4 76127644 76127954 -126200393 + THE1A LTR MaLR 3 355 0 262 276 69 48 chr4 76127955 76128100 -126200247 - L1MC4a LINE L1 -646 5518 5374 270 298 127 0 chr4 76128204 76128322 -126200025 + L2 LINE L2 3136 3280 -33 873 229 26 40 chr4 76128322 76128549 -126199798 + MER58A DNA MER1_type 1 224 0 270 298 127 0 chr4 76128549 76128588 -126199759 + L2 LINE L2 3280 3313 0 357 62 0 0 chr4 76129588 76129636 -126198711 + (GA)n Simple_repeat Simple_repeat 1 48 0 270 0 0 0 chr4 76129636 76129666 -126198681 + (TG)n Simple_repeat Simple_repeat 2 31 0 25 75 0 0 chr4 76129988 76130041 -126198306 + AT_rich Low_complexity Low_complexity 1 53 0 252 222 161 12 chr4 76130241 76130322 -126198025 - ORSL DNA AcHobo -10 265 173 21 0 0 0 chr4 76130357 76130378 -126197969 + AT_rich Low_complexity Low_complexity 1 21 0 482 17 0 0 chr4 76130553 76130611 -126197736 - AluY SINE Alu -14 296 239 250 346 108 43 chr4 76130735 76130920 -126197427 + L2 LINE L2 2440 2636 -678 497 311 79 22 chr4 76131688 76131916 -126196431 - MIR SINE MIR -21 241 1 1816 148 0 0 chr4 76132632 76132896 -126195451 + AluSq SINE Alu 1 264 -49 25 0 0 0 chr4 76132897 76132922 -126195425 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr4 76134314 76134339 -126194008 + AT_rich Low_complexity Low_complexity 1 25 0 1959 108 4 0 chr4 76135649 76135907 -126192440 - AluSx SINE Alu -26 286 28 21 0 0 0 chr4 76136280 76136301 -126192046 + AT_rich Low_complexity Low_complexity 1 21 0 299 320 20 4 chr4 76137649 76137797 -126190550 - MIR SINE MIR -50 212 9 441 91 26 9 chr4 76137889 76137971 -126190376 + L1MA3 LINE L1 6021 6094 -206 1772 93 25 4 chr4 76138033 76138312 -126190035 + L1MA3 LINE L1 6021 6305 0 4079 69 0 0 chr4 76139234 76139769 -126188578 - L1PA5 LINE L1 -1166 4980 4446 6993 58 6 0 chr4 76139769 76140979 -126187368 + L1PA5 LINE L1 4964 6177 0 1733 328 123 31 chr4 76141256 76142170 -126186177 - L2 LINE L2 -408 2906 1846 1322 179 85 115 chr4 76142170 76142595 -126185752 + MLT2D LTR ERVL 3 414 0 1733 328 123 31 chr4 76142595 76142928 -126185419 - L2 LINE L2 -1468 1846 1545 1100 220 88 20 chr4 76142979 76143284 -126185063 + MLT1C LTR MaLR 6 331 -136 1186 272 69 38 chr4 76143288 76143766 -126184581 - L2 LINE L2 -2531 783 291 354 98 0 0 chr4 76144211 76144262 -126184085 + (TC)n Simple_repeat Simple_repeat 1 51 0 1777 175 3 0 chr4 76144262 76144553 -126183794 - AluSx SINE Alu -20 292 1 21 36 0 0 chr4 76144638 76144666 -126183681 + AT_rich Low_complexity Low_complexity 1 28 0 1304 167 44 4 chr4 76145239 76145466 -126182881 + MLT1D LTR MaLR 270 505 0 966 259 46 7 chr4 76145466 76145748 -126182599 - L2 LINE L2 -842 2472 2180 191 200 33 17 chr4 76146886 76146946 -126181401 - L2 LINE L2 -1199 2115 2055 304 307 123 28 chr4 76147086 76147265 -126181082 - MIR SINE MIR -65 197 2 806 339 109 4 chr4 76147279 76147773 -126180574 + L2 LINE L2 2766 3313 0 198 324 32 73 chr4 76147787 76148006 -126180341 - L2 LINE L2 -1407 1907 1698 324 343 67 45 chr4 76148684 76148862 -126179485 + MIR3 SINE MIR 10 191 -17 453 306 39 47 chr4 76149516 76149748 -126178599 - MIR SINE MIR 0 262 33 23 0 0 0 chr4 76150426 76150449 -126177898 + AT_rich Low_complexity Low_complexity 1 23 0 2047 127 3 13 chr4 76150633 76150948 -126177399 - AluSx SINE Alu 0 312 1 343 303 91 17 chr4 76151523 76151698 -126176649 - MIR SINE MIR -2 260 73 21 0 0 0 chr4 76155005 76155026 -126173321 + AT_rich Low_complexity Low_complexity 1 21 0 1823 70 0 9 chr4 76155475 76155703 -126172644 + AluY SINE Alu 73 298 -13 21 36 0 0 chr4 76156004 76156032 -126172315 + AT_rich Low_complexity Low_complexity 1 28 0 460 314 1 38 chr4 76158079 76158222 -126170125 + GA-rich Low_complexity Low_complexity 1 148 -591 1653 181 58 3 chr4 76158222 76158565 -126169782 + MLT1A1 LTR MaLR 4 365 0 460 314 1 38 chr4 76158565 76158847 -126169500 + GA-rich Low_complexity Low_complexity 148 739 0 264 221 86 21 chr4 76158938 76159078 -126169269 + (CAGAGA)n Simple_repeat Simple_repeat 1 149 0 2277 105 0 0 chr4 76159121 76159407 -126168940 - AluSx SINE Alu -26 286 1 435 52 0 0 chr4 76160160 76160218 -126168129 + (CA)n Simple_repeat Simple_repeat 1 58 0 386 287 69 74 chr4 76160252 76160468 -126167879 + MIR SINE MIR 24 238 -24 1289 194 112 27 chr4 76160825 76161190 -126167157 + MSTD LTR MaLR 1 396 0 5485 27 2 0 chr4 76162494 76163133 -126165214 - L1PA3 LINE L1 -3 6152 5513 260 333 56 0 chr4 76163397 76163523 -126164824 - HAL1 LINE L1 -1955 552 420 2242 297 141 31 chr4 76164221 76165362 -126162985 + HAL1 LINE L1 48 1365 -1142 2367 138 13 47 chr4 76165362 76165834 -126162513 + L1MA7 LINE L1 5831 6286 -5 2242 297 141 31 chr4 76165834 76166061 -126162286 + HAL1 LINE L1 1365 1566 -941 860 295 72 58 chr4 76166082 76166818 -126161529 + HAL1 LINE L1 1762 2507 0 308 284 52 26 chr4 76167113 76167229 -126161118 - L2 LINE L2 0 3313 3195 1670 246 67 24 chr4 76167713 76168310 -126160037 - L1MC4 LINE L1 -7 8035 7413 185 338 143 13 chr4 76168417 76168571 -126159776 - L2 LINE L2 -677 2637 2464 25 0 0 0 chr4 76168671 76168696 -126159651 + AT_rich Low_complexity Low_complexity 1 25 0 587 296 148 0 chr4 76168885 76169081 -126159266 + MIR SINE MIR 2 226 -36 66 35 0 0 chr4 76170023 76170110 -126158237 + AT_rich Low_complexity Low_complexity 1 87 0 423 0 0 0 chr4 76170294 76170341 -126158006 + (TG)n Simple_repeat Simple_repeat 2 48 0 744 230 4 22 chr4 76170424 76170620 -126157727 + L1PB4 LINE L1 5961 6151 0 468 206 64 14 chr4 76171747 76171888 -126156459 + L1M4 LINE L1 4786 4933 -1213 1163 240 85 39 chr4 76171965 76172328 -126156019 + MLT1F1 LTR MaLR 188 567 0 1247 228 78 13 chr4 76172328 76172723 -126155624 + L1M4 LINE L1 4929 5349 -797 522 246 63 79 chr4 76173519 76173913 -126154434 + L1MDa LINE L1 1267 1654 -4886 231 372 0 23 chr4 76174066 76174152 -126154195 + L2 LINE L2 3137 3220 -52 274 336 39 10 chr4 76174388 76174492 -126153855 + L2 LINE L2 3201 3307 -6 21 0 0 0 chr4 76175447 76175468 -126152879 + AT_rich Low_complexity Low_complexity 1 21 0 848 153 20 137 chr4 76176516 76176764 -126151583 - MER20 DNA MER1_type 0 219 1 22 35 0 0 chr4 76176977 76177006 -126151341 + AT_rich Low_complexity Low_complexity 1 29 0 418 350 17 8 chr4 76177350 76177493 -126150854 - MIR3 SINE MIR -50 158 13 301 254 127 25 chr4 76177926 76178044 -126150303 - MIR SINE MIR -59 203 74 22 0 0 0 chr4 76179971 76179993 -126148354 + AT_rich Low_complexity Low_complexity 1 22 0 309 51 0 0 chr4 76180108 76180126 -126148221 + (TG)n Simple_repeat Simple_repeat 1 57 0 309 51 0 0 chr4 76180126 76180165 -126148182 + (TG)n Simple_repeat Simple_repeat 1 39 0 236 130 22 0 chr4 76180454 76180500 -126147847 + (CATA)n Simple_repeat Simple_repeat 1 47 0 245 300 8 46 chr4 76181931 76182061 -126146286 + L1MDa LINE L1 2170 2294 -4427 517 260 17 0 chr4 76183987 76184160 -126144187 + (CATATA)n Simple_repeat Simple_repeat 5 180 0 21 36 0 0 chr4 76184802 76184830 -126143517 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 76189512 76189534 -126138813 + AT_rich Low_complexity Low_complexity 1 22 0 417 223 155 0 chr4 76189634 76189737 -126138610 + MER94 DNA DNA 1 119 -15 470 282 15 8 chr4 76191083 76191214 -126137133 + MIR SINE MIR 107 238 -24 249 270 58 98 chr4 76192547 76192721 -126135626 - MIR SINE MIR -46 216 50 24 32 0 0 chr4 76192897 76192928 -126135419 + AT_rich Low_complexity Low_complexity 1 31 0 1661 235 73 31 chr4 76193497 76193978 -126134369 + MLT1D LTR MaLR 5 505 0 1948 128 0 17 chr4 76194673 76194991 -126133356 + AluSx SINE Alu 1 313 0 564 254 32 38 chr4 76195868 76196015 -126132332 - MIR SINE MIR -44 218 71 2303 86 0 10 chr4 76196015 76196316 -126132031 + AluSg SINE Alu 1 298 -12 564 254 32 38 chr4 76196316 76196353 -126131994 - MIR SINE MIR -191 71 35 631 332 34 13 chr4 76196509 76196747 -126131600 + MIR SINE MIR 20 262 0 1717 122 0 41 chr4 76199446 76199716 -126128631 - AluSx SINE Alu -17 295 37 420 215 19 47 chr4 76200839 76200946 -126127401 + L2 LINE L2 3209 3312 -1 24 0 0 0 chr4 76202022 76202046 -126126301 + AT_rich Low_complexity Low_complexity 1 24 0 372 297 62 0 chr4 76202079 76202207 -126126140 - MIR3 SINE MIR -6 202 67 315 290 147 67 chr4 76202640 76203164 -126125183 + L3 LINE CR1 651 1216 -361 * 405 312 159 0 chr4 76203143 76203313 -126125034 + MIR SINE MIR 10 206 -56 314 301 52 44 chr4 76203403 76203539 -126124808 + L3 LINE CR1 1263 1399 -178 281 326 45 0 chr4 76205153 76205242 -126123105 + MIR SINE MIR 48 140 -68 404 220 83 182 chr4 76206085 76206349 -126121998 - MIR SINE MIR -20 242 5 184 369 0 12 chr4 76206849 76206933 -126121414 + L3 LINE CR1 646 728 -849 797 195 138 0 chr4 76207156 76207351 -126120996 + MIR SINE MIR 6 227 -35 439 287 102 83 chr4 76207723 76208085 -126120262 - L2 LINE L2 -14 3299 2931 193 57 57 0 chr4 76208256 76208291 -126120056 + (TTG)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chr4 76208567 76208587 -126119760 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2186 108 0 13 chr4 76208683 76208990 -126119357 - AluSq SINE Alu -10 303 1 266 289 83 86 chr4 76210445 76210746 -126117601 + L2 LINE L2 3011 3310 -3 545 291 85 24 chr4 76211614 76211855 -126116492 + MIR SINE MIR 3 255 -7 235 360 145 18 chr4 76212019 76212247 -126116100 + L2 LINE L2 2435 2691 -623 346 218 28 7 chr4 76212426 76212568 -126115779 + (TA)n Simple_repeat Simple_repeat 1 145 0 459 339 23 0 chr4 76212573 76212922 -126115425 + (CATATA)n Simple_repeat Simple_repeat 1 357 0 378 254 14 21 chr4 76212930 76213214 -126115133 + (CATA)n Simple_repeat Simple_repeat 1 281 0 357 304 0 75 chr4 76213218 76213379 -126114968 + (CATATA)n Simple_repeat Simple_repeat 3 151 0 * 397 344 5 43 chr4 76213323 76213509 -126114838 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 * 497 272 0 77 chr4 76213387 76213582 -126114765 + (TA)n Simple_repeat Simple_repeat 1 180 0 376 223 21 32 chr4 76213670 76213764 -126114583 + L2 LINE L2 3221 3313 0 1650 165 4 11 chr4 76213816 76214088 -126114259 - AluJo SINE Alu -16 296 27 1972 104 0 60 chr4 76214652 76214986 -126113361 - AluSx SINE Alu 0 317 2 257 359 17 8 chr4 76215406 76215523 -126112824 + MIR SINE MIR 23 140 -122 261 0 0 0 chr4 76215670 76215699 -126112648 + (TG)n Simple_repeat Simple_repeat 2 30 0 1869 120 7 4 chr4 76215703 76215978 -126112369 - AluSx SINE Alu -36 276 1 21 36 0 0 chr4 76216362 76216390 -126111957 + AT_rich Low_complexity Low_complexity 1 28 0 210 395 18 9 chr4 76217260 76217369 -126110978 + L2 LINE L2 2565 2674 -640 180 0 0 0 chr4 76217429 76217449 -126110898 + (CA)n Simple_repeat Simple_repeat 1 20 0 24 0 0 0 chr4 76217713 76217737 -126110610 + AT_rich Low_complexity Low_complexity 1 24 0 2150 99 3 0 chr4 76218050 76218333 -126110014 + AluSq SINE Alu 14 297 -16 2437 84 0 0 chr4 76220038 76220346 -126108001 + AluSg SINE Alu 1 308 -2 182 317 59 30 chr4 76221045 76221146 -126107201 + MIR3 SINE MIR 4 107 -101 219 318 82 36 chr4 76221350 76221460 -126106887 - L3 LINE CR1 -10 1567 1453 357 211 0 0 chr4 76221579 76221650 -126106697 - MER116 DNA Mariner -4 76 6 302 335 70 49 chr4 76222097 76222282 -126106065 - L3 LINE CR1 -418 1159 971 24 0 0 0 chr4 76222352 76222376 -126105971 + AT_rich Low_complexity Low_complexity 1 24 0 543 265 163 19 chr4 76222742 76222957 -126105390 + MIR SINE MIR 17 262 0 3041 181 18 2 chr4 76224017 76224568 -126103779 + MER68 LTR ERV1 1 560 -2 355 320 45 45 chr4 76225852 76226052 -126102295 + MIR SINE MIR 1 200 -62 280 317 30 30 chr4 76226464 76226565 -126101782 + MIR SINE MIR 6 106 -156 22 0 0 0 chr4 76227370 76227392 -126100955 + AT_rich Low_complexity Low_complexity 1 22 0 940 78 28 14 chr4 76227392 76227534 -126100813 - L1PA16 LINE L1 -3 6163 6020 414 219 9 0 chr4 76227565 76227670 -126100677 - L1ME LINE L1 -3783 2297 2192 2283 288 74 39 chr4 76227834 76228313 -126100034 - L1ME LINE L1 -3941 2320 1860 2253 76 0 38 chr4 76228313 76228627 -126099720 - AluY SINE Alu -9 302 1 2283 288 74 39 chr4 76228627 76230340 -126098007 - L1ME LINE L1 -4401 1860 7 3364 174 46 0 chr4 76230484 76231110 -126097237 - L1PA16 LINE L1 -17 6149 5495 848 347 105 46 chr4 76231383 76232499 -126095848 - HERVL LTR ERVL -1426 4228 3047 949 288 81 59 chr4 76232675 76233217 -126095130 - HERVL LTR ERVL -3108 2656 2103 211 333 0 0 chr4 76233498 76233558 -126094789 - MIR SINE MIR -57 205 146 1021 267 77 29 chr4 76234072 76234621 -126093726 + MLT1E3 LTR MaLR 1 620 -4 705 241 18 24 chr4 76236629 76236799 -126091548 + MER5A DNA MER1_type 19 187 -2 1077 171 102 5 chr4 76236953 76237169 -126091178 + MLT1A1 LTR MaLR 129 365 0 639 265 115 49 chr4 76237709 76237996 -126090351 + L2 LINE L2 3000 3305 -8 1718 170 7 3 chr4 76239373 76239708 -126088639 - AluJb SINE Alu 0 336 1 944 265 40 28 chr4 76239712 76240345 -126088002 - L1ME3A LINE L1 -190 5980 4529 521 261 88 11 chr4 76240491 76240751 -126087596 - L1ME3A LINE L1 -1631 4515 4236 * 1546 279 107 33 chr4 76240748 76241847 -126086500 - L1MEc LINE L1 -2634 3512 2495 330 26 0 0 chr4 76241847 76241886 -126086461 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1546 279 107 33 chr4 76241886 76242055 -126086292 - L1MEc LINE L1 -3651 2495 2340 1620 230 56 5 chr4 76242055 76242499 -126085848 - MLT1C LTR MaLR 0 467 1 1546 279 107 33 chr4 76242499 76242556 -126085791 - L1MEc LINE L1 -3806 2340 2110 1500 127 0 9 chr4 76242559 76242779 -126085568 - AluSg/x SINE Alu -14 296 79 3550 107 7 50 chr4 76242779 76243375 -126084972 - LTR66 LTR ERVL 0 610 41 2057 131 0 6 chr4 76243582 76243894 -126084453 - AluSx SINE Alu 0 312 3 344 296 86 54 chr4 76244024 76244210 -126084137 + MIR SINE MIR 51 242 -20 213 292 42 0 chr4 76244408 76244480 -126083867 + MIR SINE MIR 117 191 -71 2126 80 0 0 chr4 76245456 76245730 -126082617 - AluY SINE Alu -12 299 26 194 174 22 0 chr4 76245828 76245874 -126082473 + (TATG)n Simple_repeat Simple_repeat 2 48 0 182 217 22 22 chr4 76246343 76246435 -126081912 + GA-rich Low_complexity Low_complexity 4 95 0 197 400 0 0 chr4 76247054 76247119 -126081228 + L2 LINE L2 3208 3272 0 570 259 0 78 chr4 76247641 76247807 -126080540 - MER91B DNA MER1_type -37 153 1 365 247 89 63 chr4 76248224 76248382 -126079965 - L2 LINE L2 -4 3309 3148 707 146 0 0 chr4 76248444 76248554 -126079793 + FLAM_C SINE Alu 9 118 -25 2296 95 3 0 chr4 76248697 76248992 -126079355 - AluSx SINE Alu -16 296 1 1233 201 48 79 chr4 76249510 76249584 -126078763 + LTR8A LTR ERV1 252 327 -400 2248 96 3 29 chr4 76249584 76249896 -126078451 - AluSx SINE Alu -8 304 1 1233 201 48 79 chr4 76249896 76250080 -126078267 + LTR8A LTR ERV1 327 496 -231 2792 184 16 62 chr4 76250080 76250722 -126077625 - LTR9 LTR ERV1 0 612 1 1233 201 48 79 chr4 76250722 76250856 -126077491 + LTR8A LTR ERV1 496 633 -94 752 271 62 90 chr4 76251698 76252199 -126076148 + MLT1J LTR MaLR 25 511 0 810 291 137 14 chr4 76253122 76253486 -126074861 - MLT1L LTR MaLR 0 615 207 526 230 32 27 chr4 76253826 76254013 -126074334 - MER53 DNA DNA -1 188 1 594 323 82 40 chr4 76254101 76254479 -126073868 + MLT1K LTR MaLR 128 521 -67 463 285 215 42 chr4 76255309 76255593 -126072754 - L2 LINE L2 -3 3310 2978 2154 226 70 14 chr4 76255733 76256307 -126072040 + MLT1E2 LTR MaLR 11 616 -10 461 318 60 13 chr4 76256321 76256472 -126071875 + MIR3 SINE MIR 42 199 -9 3501 255 19 9 chr4 76257543 76258473 -126069874 - L1MEc LINE L1 -5420 976 37 425 385 96 21 chr4 76259720 76260156 -126068191 - L2 LINE L2 0 3272 2804 296 321 48 6 chr4 76260834 76260999 -126067348 + LTR67 LTR ERVL 379 550 -7 270 336 35 26 chr4 76261007 76261120 -126067227 + MIR3 SINE MIR 95 208 0 293 216 0 0 chr4 76261306 76261357 -126066990 - L2 LINE L2 0 3313 3263 22 0 0 0 chr4 76262503 76262525 -126065822 + AT_rich Low_complexity Low_complexity 1 22 0 807 249 47 50 chr4 76262713 76263045 -126065302 + MLT1A1 LTR MaLR 28 361 -4 197 244 0 0 chr4 76263313 76263354 -126064993 + L2 LINE L2 3273 3313 0 445 336 0 0 chr4 76263640 76263765 -126064582 - MER82 DNA MER2_type -5 648 524 375 270 55 10 chr4 76263777 76263977 -126064370 + L1M4 LINE L1 4142 4350 -1796 1126 293 69 24 chr4 76264136 76264800 -126063547 + L1ME3 LINE L1 5258 5955 -166 301 277 148 12 chr4 76264832 76265048 -126063299 + L1ME3 LINE L1 5923 6166 -4 206 241 0 0 chr4 76266195 76266249 -126062098 + A-rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr4 76267051 76267080 -126061267 + AT_rich Low_complexity Low_complexity 1 29 0 191 250 118 15 chr4 76268463 76268531 -126059816 + MIR SINE MIR 127 201 -61 420 187 24 114 chr4 76270613 76270779 -126057568 + L1M4 LINE L1 4509 4659 -1487 270 136 0 0 chr4 76271124 76271168 -126057179 + (ATG)n Simple_repeat Simple_repeat 3 46 0 1008 199 42 0 chr4 76271431 76271622 -126056725 - MER3 DNA MER1_type -6 203 5 2383 96 0 0 chr4 76271716 76272063 -126056284 + AluSx SINE Alu 1 347 0 577 251 62 17 chr4 76272175 76272354 -126055993 - MIR SINE MIR -13 249 63 25 0 0 0 chr4 76274152 76274177 -126054170 + AT_rich Low_complexity Low_complexity 1 25 0 4159 174 41 29 chr4 76274435 76275258 -126053089 + L1M3 LINE L1 4478 5331 -837 323 23 23 0 chr4 76275258 76275302 -126053045 + (CA)n Simple_repeat Simple_repeat 2 46 0 4159 174 41 29 chr4 76275302 76275800 -126052547 + L1M3 LINE L1 5331 5822 -346 265 172 52 0 chr4 76275794 76275852 -126052495 + L1MB1 LINE L1 6127 6187 -2 * 267 114 0 0 chr4 76278799 76278843 -126049504 + (CA)n Simple_repeat Simple_repeat 1 44 0 2287 83 94 0 chr4 76279160 76279530 -126048817 + L1PA7 LINE L1 5773 6174 0 25 31 0 0 chr4 76282796 76282828 -126045519 + AT_rich Low_complexity Low_complexity 1 32 0 471 330 98 13 chr4 76284003 76284239 -126044108 - MIR SINE MIR 0 262 7 28 29 0 0 chr4 76286011 76286046 -126042301 + AT_rich Low_complexity Low_complexity 1 35 0 282 138 0 0 chr4 76286598 76286656 -126041691 + (TA)n Simple_repeat Simple_repeat 2 59 0 2378 61 0 10 chr4 76288080 76288376 -126039971 + AluY SINE Alu 1 293 -18 827 294 92 16 chr4 76288816 76289184 -126039163 - MLT1J1 LTR MaLR -47 399 4 326 286 104 0 chr4 76289191 76289345 -126039002 + L2 LINE L2 2714 2883 -431 331 363 53 35 chr4 76289382 76289553 -126038794 + L2 LINE L2 2910 3083 -189 253 353 49 8 chr4 76289668 76289790 -126038557 + L2 LINE L2 3137 3263 -9 1473 105 50 0 chr4 76289941 76290160 -126038187 - MER30 DNA MER1_type 0 230 1 21 0 0 0 chr4 76290308 76290329 -126038018 + AT_rich Low_complexity Low_complexity 1 21 0 1064 264 53 88 chr4 76290508 76291155 -126037192 + L2 LINE L2 2688 3308 -5 336 289 70 9 chr4 76291540 76291654 -126036693 + L2 LINE L2 2770 2890 -424 386 233 35 52 chr4 76291740 76291856 -126036491 + L2 LINE L2 3178 3291 -22 199 253 61 40 chr4 76291926 76292025 -126036322 - L2 LINE L2 -1231 2083 1983 26 0 0 0 chr4 76292861 76292887 -126035460 + AT_rich Low_complexity Low_complexity 1 26 0 702 34 0 0 chr4 76293988 76294076 -126034271 - L1PA4 LINE L1 0 6155 6068 30 27 0 0 chr4 76295722 76295759 -126032588 + AT_rich Low_complexity Low_complexity 1 37 0 7318 41 0 0 chr4 76295769 76296838 -126031509 - L1PA4 LINE L1 0 6155 5082 1522 196 3 26 chr4 76297036 76297348 -126030999 + AluJb SINE Alu 1 305 -7 614 157 157 0 chr4 76297436 76297557 -126030790 - MLT1D LTR MaLR 0 505 366 240 216 0 20 chr4 76298050 76298101 -126030246 + GA-rich Low_complexity Low_complexity 4 53 0 587 315 22 11 chr4 76299065 76299243 -126029104 + MIR3 SINE MIR 20 199 -9 466 315 49 27 chr4 76299382 76299566 -126028781 - MER5A DNA MER1_type -1 188 1 479 248 248 0 chr4 76300306 76300451 -126027896 - MER5A DNA MER1_type 0 189 9 1627 254 80 23 chr4 76300522 76301117 -126027230 + MLT1G LTR MaLR 1 588 -2 503 274 31 35 chr4 76301664 76301810 -126026537 - L2 LINE L2 -12 3301 3155 2050 143 55 3 chr4 76301810 76302153 -126026194 + MER46B DNA MER2_type 1 236 0 503 274 31 35 chr4 76302153 76302232 -126026115 - L2 LINE L2 -158 3155 3077 202 167 15 30 chr4 76302294 76302360 -126025987 + (TAG)n Simple_repeat Simple_repeat 1 65 0 222 186 23 0 chr4 76302474 76302517 -126025830 + L2 LINE L2 2430 2473 -841 596 261 64 11 chr4 76302517 76302705 -126025642 + MLT1J2 LTR MaLR 1 198 -252 611 289 21 11 chr4 76302828 76303018 -126025329 + LTR33 LTR ERVL 323 514 -7 374 352 46 0 chr4 76304749 76304857 -126023490 - MIR3 SINE MIR -81 127 15 229 348 0 0 chr4 76304879 76304948 -126023399 + MER5B DNA MER1_type 41 109 -69 1466 185 64 122 chr4 76304951 76305466 -126022881 + MLT1E1 LTR MaLR 1 416 -177 1321 221 48 17 chr4 76305534 76305824 -126022523 + MER82 DNA MER2_type 355 653 0 7258 48 0 2 chr4 76306079 76307451 -126020896 + L1PA5 LINE L1 4784 6154 0 1921 175 76 24 chr4 76308697 76309159 -126019188 - Charlie1b DNA MER1_type 0 523 38 405 228 119 10 chr4 76309161 76309262 -126019085 - MER81 DNA DNA -1 113 2 25 31 0 0 chr4 76309604 76309636 -126018711 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr4 76310022 76310065 -126018282 + AT_rich Low_complexity Low_complexity 1 43 0 1450 202 45 26 chr4 76311347 76311724 -126016623 - L1ME2 LINE L1 -4 6160 5777 686 233 60 57 chr4 76311726 76312044 -126016303 - L1ME2 LINE L1 -758 5388 5070 767 258 87 9 chr4 76312400 76312675 -126015672 - MLT1G LTR MaLR -36 531 151 1723 184 82 60 chr4 76312690 76313103 -126015244 - MSTB LTR MaLR -4 422 1 222 347 41 16 chr4 76313303 76313424 -126014923 + MIR SINE MIR 35 158 -104 486 260 24 16 chr4 76313740 76313863 -126014484 - L2 LINE L2 -1 3312 3189 22 35 0 0 chr4 76314048 76314077 -126014270 + AT_rich Low_complexity Low_complexity 1 29 0 2155 177 35 20 chr4 76315198 76315656 -126012691 + L1MB8 LINE L1 5712 6176 -2 779 280 97 43 chr4 76316388 76316923 -126011424 - MLT1L LTR MaLR -6 609 46 364 281 82 41 chr4 76316940 76317086 -126011261 + L3 LINE CR1 1132 1283 -294 192 319 181 0 chr4 76317168 76317262 -126011085 + L3 LINE CR1 1442 1552 -25 180 338 0 0 chr4 76318429 76318509 -126009838 + L2 LINE L2 1916 1995 -1319 942 276 91 18 chr4 76318514 76318855 -126009492 + MER69 DNA AcHobo 19 384 -842 1928 213 68 34 chr4 76318861 76319452 -126008895 + MER69 DNA AcHobo 1914 2524 -2 1162 307 139 31 chr4 76319454 76320295 -126008052 + L2 LINE L2 1994 2925 -389 246 95 0 0 chr4 76321355 76321397 -126006950 + (GGAA)n Simple_repeat Simple_repeat 1 42 0 447 19 0 0 chr4 76321399 76321451 -126006896 + (GAGAA)n Simple_repeat Simple_repeat 4 55 0 1297 203 43 18 chr4 76322248 76322553 -126005794 + AluJo SINE Alu 1 312 0 42 20 0 0 chr4 76322712 76322761 -126005586 + AT_rich Low_complexity Low_complexity 1 49 0 235 296 72 16 chr4 76323423 76323548 -126004799 - MER103 DNA DNA -27 139 8 22 0 0 0 chr4 76323559 76323581 -126004766 + AT_rich Low_complexity Low_complexity 1 22 0 907 268 9 5 chr4 76323792 76324012 -126004335 - MIR SINE MIR 0 262 42 213 39 0 0 chr4 76324306 76324332 -126004015 + (TTATA)n Simple_repeat Simple_repeat 5 30 0 183 80 0 0 chr4 76324337 76324362 -126003985 + (TA)n Simple_repeat Simple_repeat 2 26 0 23 54 0 0 chr4 76324594 76324631 -126003716 + AT_rich Low_complexity Low_complexity 1 37 0 22 88 0 0 chr4 76324749 76324806 -126003541 + AT_rich Low_complexity Low_complexity 1 57 0 1909 229 39 14 chr4 76325172 76325666 -126002681 + MER69B DNA AcHobo 475 980 -246 542 71 0 24 chr4 76325679 76325763 -126002584 + L1PA8 LINE L1 5764 5845 -327 185 0 40 0 chr4 76326933 76326958 -126001389 + (TTG)n Simple_repeat Simple_repeat 2 27 0 235 164 66 0 chr4 76327674 76327735 -126000612 + (TGAA)n Simple_repeat Simple_repeat 1 65 0 296 321 176 15 chr4 76328263 76328394 -125999953 + MIR SINE MIR 3 154 -108 2111 158 35 0 chr4 76328538 76328886 -125999461 - MER46B DNA MER2_type -1 235 1 35 41 0 0 chr4 76329339 76329388 -125998959 + AT_rich Low_complexity Low_complexity 1 49 0 399 269 34 23 chr4 76329640 76329815 -125998532 + L1ME LINE L1 5601 5777 -344 214 242 32 16 chr4 76329832 76329894 -125998453 - L2 LINE L2 -9 3263 3201 23 54 0 0 chr4 76330024 76330061 -125998286 + AT_rich Low_complexity Low_complexity 1 37 0 190 250 39 0 chr4 76330393 76330445 -125997902 + L3 LINE CR1 442 495 -1082 651 268 148 32 chr4 76330765 76331049 -125997298 - L2 LINE L2 -1 3312 2996 644 222 0 0 chr4 76331296 76331413 -125996934 + Tigger3(Golem) DNA MER2_type 1 117 -2912 3817 139 68 11 chr4 76331422 76332147 -125996200 + Tigger3(Golem) DNA MER2_type 2264 3029 0 195 396 22 0 chr4 76333358 76333449 -125994898 - L2 LINE L2 -4 3268 3176 825 306 97 36 chr4 76333739 76334346 -125994001 - L2 LINE L2 0 3313 2683 729 288 180 38 chr4 76334347 76334513 -125993834 - L2 LINE L2 0 3313 3172 2330 140 20 0 chr4 76334513 76334870 -125993477 + THE1B LTR MaLR 1 364 0 729 288 180 38 chr4 76334870 76335422 -125992925 - L2 LINE L2 -141 3172 2439 198 288 120 27 chr4 76335441 76335615 -125992732 + L2 LINE L2 2044 2234 -1080 392 358 80 4 chr4 76335615 76335841 -125992506 + MIR SINE MIR 2 244 -18 191 340 151 38 chr4 76336295 76336533 -125991814 + L2 LINE L2 2806 3070 -202 490 323 48 0 chr4 76338253 76338442 -125989905 + MIR SINE MIR 51 248 -14 2410 158 14 32 chr4 76338531 76338973 -125989374 + Tigger2a DNA MER2_type 1 434 0 279 0 0 0 chr4 76339282 76339297 -125989050 + (CA)n Simple_repeat Simple_repeat 1 46 0 279 0 0 0 chr4 76339297 76339328 -125989019 + (CA)n Simple_repeat Simple_repeat 2 32 0 5401 211 74 22 chr4 76339476 76340853 -125987494 + Charlie1a DNA MER1_type 6 1454 -1 27 49 0 0 chr4 76341934 76341975 -125986372 + AT_rich Low_complexity Low_complexity 1 41 0 5053 208 93 51 chr4 76342087 76343513 -125984834 + L1MD1 LINE L1 39 1523 -5017 8964 229 48 30 chr4 76343520 76343665 -125984682 + L1MD1 LINE L1 2259 2400 -4236 2642 20 0 3 chr4 76343665 76343968 -125984379 + AluYa5 SINE Alu 1 302 -9 8964 229 48 30 chr4 76343968 76346084 -125982263 + L1MD1 LINE L1 2400 4477 -2159 22736 35 0 0 chr4 76346084 76349631 -125978716 + L1PA3 LINE L1 2610 6155 0 8964 229 48 30 chr4 76349631 76351662 -125976685 + L1MD1 LINE L1 4477 6636 0 378 273 80 0 chr4 76351674 76351762 -125976585 - MER5A DNA MER1_type -86 103 9 1382 264 77 6 chr4 76351770 76352239 -125976108 + L1M4 LINE L1 3834 4335 -1811 2381 82 3 0 chr4 76352661 76352965 -125975382 + AluY SINE Alu 2 306 -5 1981 195 0 3 chr4 76354636 76355000 -125973347 + MLT1A1 LTR MaLR 1 363 -2 342 321 63 14 chr4 76355048 76355212 -125973135 - MIR SINE MIR -57 205 36 2976 170 56 19 chr4 76357558 76358183 -125970164 - L1MA9 LINE L1 -3 7330 6683 2531 180 22 0 chr4 76358191 76358789 -125969558 + MER44D DNA MER2_type 1 597 -8 10818 240 63 27 chr4 76358793 76364016 -125964331 - L1MA9 LINE L1 -639 6673 1568 194 293 35 17 chr4 76364874 76364932 -125963415 - L2 LINE L2 -10 3262 3204 23 33 0 0 chr4 76366433 76366463 -125961884 + AT_rich Low_complexity Low_complexity 1 30 0 222 91 0 0 chr4 76367545 76367578 -125960769 + (TC)n Simple_repeat Simple_repeat 2 34 0 201 74 0 0 chr4 76367578 76367605 -125960742 + (CA)n Simple_repeat Simple_repeat 1 27 0 393 282 33 22 chr4 76367882 76368063 -125960284 + MER5A DNA MER1_type 5 187 -2 16901 191 26 23 chr4 76368554 76371646 -125956701 - L1PA16 LINE L1 -9 6860 3778 1361 105 0 0 chr4 76371646 76371837 -125956510 - L1PA7 LINE L1 -2 6152 5962 16901 191 26 23 chr4 76371837 76371938 -125956409 - L1PA16 LINE L1 -3091 3778 3679 2072 124 10 3 chr4 76371938 76372245 -125956102 - AluSg1 SINE Alu 0 309 1 16901 191 26 23 chr4 76372245 76375901 -125952446 - L1PA16 LINE L1 -3190 3679 12 200 280 0 0 chr4 76376016 76376066 -125952281 + (TATG)n Simple_repeat Simple_repeat 3 52 0 13808 152 19 12 chr4 76377684 76381112 -125947235 + L1MA1 LINE L1 2608 6070 -232 2025 107 0 53 chr4 76381112 76381438 -125946909 + AluSx SINE Alu 1 310 0 13808 152 19 12 chr4 76381438 76381673 -125946674 + L1MA1 LINE L1 6070 6302 0 316 183 183 0 chr4 76381823 76381894 -125946453 + L1MC1 LINE L1 6235 6318 -15 1430 187 24 0 chr4 76382640 76382891 -125945456 - L1PB4 LINE L1 -33 6123 5867 213 196 0 0 chr4 76382975 76383021 -125945326 + CT-rich Low_complexity Low_complexity 1 46 0 44119 41 0 1 chr4 76383753 76389912 -125938435 - L1PA3 LINE L1 0 6155 2 2143 128 0 0 chr4 76389914 76390210 -125938137 - AluSx SINE Alu -10 302 7 239 281 73 31 chr4 76390397 76390493 -125937854 + MIR SINE MIR 163 262 0 189 0 0 0 chr4 76392464 76392485 -125935862 + (CATTA)n Simple_repeat Simple_repeat 4 24 0 448 261 266 5 chr4 76393362 76393455 -125934892 - MIR SINE MIR 0 262 195 217 25 0 75 chr4 76393455 76393495 -125934852 + (TTA)n Simple_repeat Simple_repeat 3 39 0 448 261 266 5 chr4 76393495 76393600 -125934747 - MIR SINE MIR -67 195 12 363 331 8 38 chr4 76393846 76393979 -125934368 + MIR3 SINE MIR 12 140 -68 23 68 0 0 chr4 76395402 76395446 -125932901 + AT_rich Low_complexity Low_complexity 1 44 0 279 0 0 0 chr4 76395490 76395521 -125932826 + (TG)n Simple_repeat Simple_repeat 2 32 0 432 55 0 0 chr4 76395637 76395692 -125932655 + (TA)n Simple_repeat Simple_repeat 1 55 0 201 39 0 0 chr4 76395691 76395717 -125932630 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 470 274 122 69 chr4 76396140 76396443 -125931904 + L2 LINE L2 2995 3313 0 386 307 33 13 chr4 76396831 76396981 -125931366 - L2 LINE L2 -1 3312 3160 827 211 6 0 chr4 76397252 76397432 -125930915 + L1MA6 LINE L1 6120 6300 0 471 377 37 22 chr4 76397922 76398195 -125930152 - L2 LINE L2 -233 3080 2804 701 169 169 0 chr4 76398197 76398345 -125930002 + MER5A DNA MER1_type 1 173 -16 358 342 17 0 chr4 76398368 76398485 -125929862 + MER5B DNA MER1_type 1 119 -59 255 188 0 0 chr4 76398498 76398546 -125929801 + Tigger3(Golem) DNA MER2_type 2861 2908 -121 209 91 45 61 chr4 76398549 76398681 -125929666 + (TATAA)n Simple_repeat Simple_repeat 5 134 0 22 35 0 0 chr4 76398683 76398712 -125929635 + AT_rich Low_complexity Low_complexity 1 29 0 422 51 120 0 chr4 76398712 76398870 -125929477 + (TA)n Simple_repeat Simple_repeat 2 178 0 195 29 114 14 chr4 76398981 76399051 -125929296 + (TA)n Simple_repeat Simple_repeat 1 77 0 913 306 153 30 chr4 76399119 76399727 -125928620 - L2 LINE L2 -507 2807 2125 264 263 0 0 chr4 76399972 76400029 -125928318 - MIR SINE MIR -127 135 79 298 321 68 31 chr4 76400330 76400492 -125927855 - MER5A DNA MER1_type -15 174 7 225 0 0 0 chr4 76400665 76400690 -125927657 + (CA)n Simple_repeat Simple_repeat 1 25 0 5480 139 54 19 chr4 76400735 76401760 -125926587 - Tigger3b DNA MER2_type 0 1231 171 329 255 0 43 chr4 76401786 76401880 -125926467 - L1MC4 LINE L1 -1339 6703 6614 2401 73 0 0 chr4 76402247 76402547 -125925800 + AluY SINE Alu 1 300 -11 470 281 52 33 chr4 76404763 76404916 -125923431 - MIR SINE MIR -75 187 32 8580 173 40 11 chr4 76405152 76405815 -125922532 + L1MB3 LINE L1 24 666 -5718 180 0 0 0 chr4 76405815 76405835 -125922512 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8580 173 40 11 chr4 76405835 76406832 -125921515 + L1MB3 LINE L1 666 1732 -4652 2996 187 28 34 chr4 76406821 76407801 -125920546 + L1MB3 LINE L1 4837 5803 -616 * 2321 126 8 16 chr4 76407802 76408167 -125920180 + THE1B LTR MaLR 3 364 0 11748 93 6 1 chr4 76408167 76409739 -125918608 + THE1B-int LTR MaLR 1 1580 0 2428 132 3 6 chr4 76409739 76410104 -125918243 + THE1B LTR MaLR 1 364 0 295 304 96 9 chr4 76410241 76410356 -125917991 + MIR SINE MIR 138 262 0 2368 92 0 0 chr4 76410363 76410666 -125917681 - AluY SINE Alu -8 303 1 857 129 27 0 chr4 76411264 76411411 -125916936 + HSMAR2 DNA Mariner 2 152 -1150 333 135 0 0 chr4 76411410 76411462 -125916885 + THE1B LTR MaLR 292 343 -21 * 3178 191 9 8 chr4 76411462 76412102 -125916245 + L1MB3 LINE L1 5777 6417 -2 30 0 0 0 chr4 76413099 76413129 -125915218 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr4 76413249 76413275 -125915072 + AT_rich Low_complexity Low_complexity 1 26 0 1639 220 6 12 chr4 76415135 76415467 -125912880 - MER90 LTR ERV1 -2 612 283 687 197 93 81 chr4 76415802 76416061 -125912286 - MER5C DNA MER1_type -3 321 60 307 273 179 34 chr4 76417573 76417766 -125910581 - MIR SINE MIR -41 221 6 1185 80 0 0 chr4 76418153 76418315 -125910032 + (GAA)n Simple_repeat Simple_repeat 2 163 0 232 270 189 38 chr4 76419857 76420016 -125908331 - MIR SINE MIR -61 201 19 401 233 33 8 chr4 76420414 76420534 -125907813 + MIR SINE MIR 84 206 -56 1062 280 118 22 chr4 76420718 76421245 -125907102 + L2 LINE L2 2623 3313 0 260 308 67 25 chr4 76422207 76422327 -125906020 - L3b LINE CR1 -154 1429 1305 205 255 0 0 chr4 76422557 76422604 -125905743 + MIR SINE MIR 211 257 -5 634 244 125 0 chr4 76423051 76423227 -125905120 + MIR SINE MIR 63 260 -2 200 283 40 40 chr4 76423318 76423417 -125904930 - MIR3 SINE MIR -18 190 92 1789 146 138 14 chr4 76423879 76424250 -125904097 + MSTA LTR MaLR 1 417 -11 290 26 0 0 chr4 76424237 76424276 -125904071 + MADE1 DNA Mariner 42 80 0 * 191 62 62 0 chr4 76424321 76424353 -125903994 + GA-rich Low_complexity Low_complexity 4 37 0 1350 206 67 49 chr4 76426447 76426836 -125901511 - MLT1D LTR MaLR -109 396 1 314 321 72 5 chr4 76427005 76427198 -125901149 + MLT1K LTR MaLR 155 360 -228 250 298 12 0 chr4 76427237 76427321 -125901026 + GA-rich Low_complexity Low_complexity 1 85 0 255 203 16 0 chr4 76427386 76427450 -125900897 + MLT1K LTR MaLR 524 588 0 3284 136 19 31 chr4 76427780 76428400 -125899947 + L1PA10 LINE L1 4566 5178 -968 3618 75 2 0 chr4 76428400 76428868 -125899479 + L1PA10 LINE L1 5695 6163 -5 311 293 154 0 chr4 76428883 76429006 -125899341 - MIR SINE MIR -108 154 13 2091 123 13 0 chr4 76429084 76429384 -125898963 + AluSg1 SINE Alu 1 304 -5 1072 116 0 0 chr4 76429393 76429539 -125898808 + AluJb SINE Alu 159 304 -8 376 269 76 25 chr4 76431819 76431938 -125896409 - L2 LINE L2 0 3313 3189 672 294 32 32 chr4 76432860 76433142 -125895205 + L1ME3A LINE L1 5883 6164 -6 473 288 27 0 chr4 76434344 76434490 -125893857 + MIR SINE MIR 98 247 -15 363 271 86 7 chr4 76434744 76434884 -125893463 + MIR SINE MIR 81 231 -31 231 131 0 66 chr4 76437265 76437326 -125891021 + (GGA)n Simple_repeat Simple_repeat 2 58 0 251 211 167 22 chr4 76438743 76438833 -125889514 + MIR SINE MIR 40 142 -66 362 260 197 0 chr4 76438990 76439198 -125889149 + MER112 DNA MER1_type 1 249 -11 1114 97 0 0 chr4 76439438 76439583 -125888764 + AluSg/x SINE Alu 159 303 -9 244 297 68 8 chr4 76439764 76439882 -125888465 + MIR SINE MIR 117 241 -21 189 434 35 0 chr4 76440820 76440933 -125887414 + L2 LINE L2 3134 3250 -22 262 214 0 0 chr4 76441401 76441457 -125886890 + L2 LINE L2 3257 3312 -1 1399 103 11 0 chr4 76441593 76441777 -125886570 + AluSg/x SINE Alu 110 295 -17 194 108 27 27 chr4 76441818 76441855 -125886492 - L3b LINE CR1 -17 1566 1530 193 286 0 20 chr4 76442553 76442602 -125885745 + L2 LINE L2 3216 3263 -9 196 347 57 65 chr4 76442867 76443129 -125885218 + L3b LINE CR1 1241 1500 -83 2487 57 0 0 chr4 76443149 76443445 -125884902 + AluY SINE Alu 1 296 -15 256 309 35 59 chr4 76444574 76444721 -125883626 - MER5B DNA MER1_type -6 183 30 493 135 157 0 chr4 76444785 76444874 -125883473 - MER5A DNA MER1_type -77 112 10 21 0 0 0 chr4 76445166 76445187 -125883160 + AT_rich Low_complexity Low_complexity 1 21 0 2094 111 11 0 chr4 76445380 76445685 -125882662 + AluSx SINE Alu 1 308 0 345 192 34 4 chr4 76445773 76445890 -125882457 + AluJo SINE Alu 1 113 -189 363 23 0 0 chr4 76445890 76445934 -125882413 + (CA)n Simple_repeat Simple_repeat 2 45 0 345 192 34 4 chr4 76445934 76446025 -125882322 + AluJo SINE Alu 113 290 -12 220 226 19 0 chr4 76448644 76448697 -125879650 + (CATATA)n Simple_repeat Simple_repeat 5 58 0 216 279 29 19 chr4 76448650 76448754 -125879593 + (TA)n Simple_repeat Simple_repeat 2 106 0 * 2081 134 3 3 chr4 76448861 76449159 -125879188 + AluSx SINE Alu 1 298 -14 23 33 0 0 chr4 76449216 76449246 -125879101 + AT_rich Low_complexity Low_complexity 1 30 0 223 292 0 34 chr4 76449311 76449400 -125878947 + A-rich Low_complexity Low_complexity 5 90 0 22 0 0 0 chr4 76451722 76451744 -125876603 + AT_rich Low_complexity Low_complexity 1 22 0 290 352 32 8 chr4 76452829 76452954 -125875393 - MLT1L LTR MaLR -134 481 354 3859 150 100 92 chr4 76453728 76454141 -125874206 - L1MC3 LINE L1 0 7785 7377 2276 82 0 0 chr4 76454141 76454421 -125873926 + AluSq SINE Alu 1 280 -33 378 0 0 0 chr4 76454421 76454463 -125873884 + (CA)n Simple_repeat Simple_repeat 1 42 0 3859 150 100 92 chr4 76454463 76454658 -125873689 - L1MC3 LINE L1 -408 7377 7185 270 284 0 0 chr4 76454658 76454725 -125873622 - MLT1F1 LTR MaLR -466 101 35 3859 150 100 92 chr4 76454725 76455120 -125873227 - L1MC3 LINE L1 -600 7185 6706 338 285 0 0 chr4 76455177 76455277 -125873070 + MIR SINE MIR 29 128 -80 1124 195 33 0 chr4 76455315 76455525 -125872822 - MER20 DNA MER1_type -2 217 1 469 276 110 14 chr4 76455529 76455674 -125872673 - MIR SINE MIR -87 175 17 207 277 84 42 chr4 76455689 76455808 -125872539 + MIR SINE MIR 132 255 -7 189 295 33 0 chr4 76456158 76456219 -125872128 - MIR SINE MIR -122 140 78 933 189 85 39 chr4 76456982 76457288 -125871059 + MER33 DNA MER1_type 3 322 -2 281 309 54 13 chr4 76457507 76457656 -125870691 - MLT1K LTR MaLR -2 586 432 241 215 0 15 chr4 76457718 76457783 -125870564 - MLT1K LTR MaLR -166 422 359 276 364 49 0 chr4 76457879 76458041 -125870306 - MLT1K LTR MaLR -412 176 7 181 135 0 27 chr4 76458333 76458370 -125869977 + L2 LINE L2 3275 3310 -3 456 320 64 6 chr4 76460390 76460562 -125867785 + MIR SINE MIR 28 209 -53 218 188 0 79 chr4 76461415 76461516 -125866831 + T-rich Low_complexity Low_complexity 1 93 0 41578 43 2 2 chr4 76461564 76467714 -125860633 + L1PA3 LINE L1 3 6152 -3 281 343 40 60 chr4 76467740 76467941 -125860406 - MIR3 SINE MIR 0 208 12 191 262 0 0 chr4 76468234 76468276 -125860071 + MER5C DNA MER1_type 5 46 -278 292 191 133 0 chr4 76468464 76468569 -125859778 + MER5C DNA MER1_type 129 247 -77 234 359 94 19 chr4 76468577 76468789 -125859558 + L2 LINE L2 2857 3084 -229 413 295 46 29 chr4 76468939 76469112 -125859235 - MIR SINE MIR -7 255 80 623 195 89 0 chr4 76469403 76469572 -125858775 + MER53 DNA DNA 6 189 0 212 200 15 0 chr4 76469689 76469754 -125858593 + (TA)n Simple_repeat Simple_repeat 2 67 0 1352 124 14 0 chr4 76469754 76469964 -125858383 - MLT2B1 LTR ERVL -307 213 1 424 301 29 57 chr4 76470130 76470339 -125858008 + L3b LINE CR1 1190 1392 -191 22 0 0 0 chr4 76470371 76470393 -125857954 + AT_rich Low_complexity Low_complexity 1 22 0 639 12 0 35 chr4 76470794 76470880 -125857467 + L1PA4 LINE L1 6073 6155 0 1796 136 147 8 chr4 76470922 76471296 -125857051 - MSTB1 LTR MaLR -6 426 1 226 378 54 18 chr4 76472018 76472129 -125856218 + L2 LINE L2 3184 3298 -15 1090 205 70 20 chr4 76472690 76472934 -125855413 - AluJb SINE Alu 0 312 57 199 355 41 0 chr4 76473323 76473444 -125854903 - MIR SINE MIR -30 232 107 222 128 0 0 chr4 76473544 76473583 -125854764 + (GA)n Simple_repeat Simple_repeat 2 40 0 2245 126 5 35 chr4 76473758 76474131 -125854216 + THE1B LTR MaLR 1 362 -2 10456 104 33 28 chr4 76474132 76475697 -125852650 + THE1B-int LTR MaLR 1 1573 -7 2456 119 11 6 chr4 76475703 76476065 -125852282 + THE1B LTR MaLR 1 364 0 319 264 144 8 chr4 76476188 76476313 -125852034 + MIR SINE MIR 121 262 0 6735 142 63 31 chr4 76476900 76478160 -125850187 + HSMAR2 DNA Mariner 2 1301 -1 21 0 0 0 chr4 76478203 76478224 -125850123 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr4 76479609 76479654 -125848693 + AT_rich Low_complexity Low_complexity 1 45 0 22 70 0 0 chr4 76479902 76479945 -125848402 + AT_rich Low_complexity Low_complexity 1 43 0 225 304 29 49 chr4 76480197 76480299 -125848048 + MER5A DNA MER1_type 35 134 -55 255 135 24 48 chr4 76480321 76480447 -125847900 + (TA)n Simple_repeat Simple_repeat 2 124 0 280 283 131 94 chr4 76481353 76481597 -125846750 + L1ME3 LINE L1 350 602 -5517 846 234 35 111 chr4 76481815 76482131 -125846216 + MLT1E LTR MaLR 54 345 -248 236 205 18 0 chr4 76482162 76482218 -125846129 + MLT1E1 LTR MaLR 373 436 -188 1014 249 29 8 chr4 76482280 76482525 -125845822 + MLT1E1 LTR MaLR 405 654 0 379 228 112 74 chr4 76482564 76482779 -125845568 + L1 LINE L1 2955 3177 -2969 448 328 34 59 chr4 76482781 76483168 -125845179 + L1ME3 LINE L1 3233 3609 -2520 6248 107 14 4 chr4 76483169 76484138 -125844209 + L1MA3 LINE L1 2370 3348 -4217 1738 173 6 88 chr4 76484138 76484605 -125843742 + L1MB8 LINE L1 5741 6169 -9 15018 160 32 7 chr4 76484629 76485522 -125842825 + L1MA3 LINE L1 3331 4200 -3524 1950 148 7 0 chr4 76485522 76485820 -125842527 + AluSx SINE Alu 1 300 -12 15018 160 32 7 chr4 76485820 76489206 -125839141 + L1MA3 LINE L1 4200 7723 -1 186 43 0 0 chr4 76489366 76489389 -125838958 + (T)n Simple_repeat Simple_repeat 1 23 0 2045 149 3 0 chr4 76489477 76489779 -125838568 + AluSq SINE Alu 1 303 -10 389 321 76 22 chr4 76489997 76490119 -125838228 - L1M4 LINE L1 -3556 2590 2476 2263 143 58 17 chr4 76490119 76490533 -125837814 - Tigger2a DNA MER2_type 0 434 4 389 321 76 22 chr4 76490533 76490634 -125837713 - L1M4 LINE L1 -3670 2476 2355 23 33 0 0 chr4 76490635 76490665 -125837682 + AT_rich Low_complexity Low_complexity 1 30 0 457 294 82 35 chr4 76490741 76491430 -125836917 + L1ME3 LINE L1 3860 4581 -1548 5749 113 12 2 chr4 76491465 76492313 -125836034 - L1PA15 LINE L1 -3 6162 5307 503 210 0 0 chr4 76492314 76492438 -125835909 + L1P LINE L1 3047 3170 -2976 1278 214 10 0 chr4 76492451 76492746 -125835601 + L1P LINE L1 4235 4532 -1614 236 270 135 21 chr4 76492851 76493088 -125835259 + L1ME3 LINE L1 4739 5002 -1127 1879 209 50 27 chr4 76493327 76493419 -125834928 + MLT1C LTR MaLR 18 106 -361 2095 65 11 0 chr4 76493419 76493695 -125834652 + L1PA7 LINE L1 5874 6152 -2 1879 209 50 27 chr4 76493695 76494042 -125834305 + MLT1C LTR MaLR 106 467 0 278 259 138 73 chr4 76494066 76494298 -125834049 + L1ME3 LINE L1 5393 5639 -508 378 249 126 4 chr4 76494492 76494720 -125833627 + L1ME3 LINE L1 5636 5902 -243 237 282 97 58 chr4 76495791 76495894 -125832453 + MER91C DNA MER1_type 3 109 -31 1404 233 137 53 chr4 76497009 76497375 -125830972 - MLT1E1 LTR MaLR 0 654 209 188 65 0 32 chr4 76497375 76497406 -125830941 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1404 233 137 53 chr4 76497406 76497635 -125830712 - MLT1E1 LTR MaLR -445 209 1 338 117 0 0 chr4 76498026 76498086 -125830261 - L1PA16 LINE L1 -1 6165 6106 24 67 0 0 chr4 76499763 76499808 -125828539 + AT_rich Low_complexity Low_complexity 1 45 0 8352 104 5 2 chr4 76499904 76501068 -125827279 + L1P LINE L1 2 1169 -4977 * 34280 54 1 1 chr4 76501058 76505341 -125823006 - L1P LINE L1 -1862 4284 2 8651 42 3 0 chr4 76505341 76507173 -125821174 + L1PA5 LINE L1 4321 6154 0 7325 44 0 0 chr4 76507168 76508368 -125819979 + L1PA5 LINE L1 4942 6143 -11 * 189 214 0 0 chr4 76508372 76508414 -125819933 + (TA)n Simple_repeat Simple_repeat 2 43 0 229 69 0 0 chr4 76508414 76508443 -125819904 + Tigger4(Zombi) DNA MER2_type 129 157 -2574 * 2938 131 18 18 chr4 76508436 76508932 -125819415 + Tigger4(Zombi) DNA MER2_type 2233 2728 -3 2499 146 15 17 chr4 76509157 76509561 -125818786 - MLT2B1 LTR ERVL -117 403 1 773 135 0 0 chr4 76509916 76510027 -125818320 + THE1-int LTR MaLR 1120 1230 -350 888 136 73 17 chr4 76510273 76510450 -125817897 + MER53 DNA DNA 3 189 0 35 0 0 0 chr4 76511605 76511640 -125816707 + AT_rich Low_complexity Low_complexity 1 35 0 569 208 33 0 chr4 76511760 76511880 -125816467 - L1MC1 LINE L1 0 6333 6210 212 253 13 27 chr4 76511995 76512070 -125816277 + (TA)n Simple_repeat Simple_repeat 1 74 0 771 251 0 12 chr4 76512974 76513137 -125815210 - MER20 DNA MER1_type -58 161 1 345 344 16 16 chr4 76513152 76513274 -125815073 - MER5A DNA MER1_type -2 187 66 2250 92 0 0 chr4 76513812 76514137 -125814210 + AluSx SINE Alu 1 325 0 230 244 0 0 chr4 76514407 76514452 -125813895 - L2 LINE L2 -15 3257 3213 185 306 42 49 chr4 76514515 76514659 -125813688 + L2 LINE L2 2918 3060 -212 183 381 62 21 chr4 76514770 76514855 -125813492 + L2 LINE L2 3132 3220 -52 527 339 10 26 chr4 76514855 76515047 -125813300 + MER5A DNA MER1_type 1 189 0 706 224 0 14 chr4 76515060 76515203 -125813144 + MER20 DNA MER1_type 1 141 -78 22 0 0 0 chr4 76515226 76515248 -125813099 + AT_rich Low_complexity Low_complexity 1 22 0 225 289 0 36 chr4 76515587 76515670 -125812677 + Charlie6 DNA MER1_type 2301 2380 -1120 1120 140 1 11 chr4 76515772 76516001 -125812346 - L1M1 LINE L1 -4102 3464 2892 182 329 106 53 chr4 76516718 76516925 -125811422 - L2 LINE L2 -645 2669 2452 180 0 0 0 chr4 76518632 76518652 -125809695 + (T)n Simple_repeat Simple_repeat 1 20 0 464 299 15 8 chr4 76518743 76518877 -125809470 - L2 LINE L2 0 3272 3138 3751 120 42 68 chr4 76519075 76519262 -125809085 + L1MA8 LINE L1 5485 5675 -616 5525 67 0 1 chr4 76519262 76519993 -125808354 + L1PA7 LINE L1 5443 6172 0 3751 120 42 68 chr4 76519993 76520273 -125808074 + L1MA8 LINE L1 5675 5929 -362 1643 67 13 50 chr4 76520273 76520511 -125807836 + AluY SINE Alu 65 293 -18 3751 120 42 68 chr4 76520511 76520800 -125807547 + L1MA8 LINE L1 5929 6224 -67 387 0 0 0 chr4 76521143 76521186 -125807161 + (TG)n Simple_repeat Simple_repeat 2 44 0 29 60 0 0 chr4 76522264 76522314 -125806033 + AT_rich Low_complexity Low_complexity 1 50 0 372 313 14 0 chr4 76522386 76522533 -125805814 + L1ME LINE L1 5589 5737 -384 11552 76 11 0 chr4 76522802 76525142 -125803205 + L1PA6 LINE L1 3801 6154 0 27 0 0 0 chr4 76525194 76525221 -125803126 + AT_rich Low_complexity Low_complexity 1 27 0 222 303 168 17 chr4 76525318 76525437 -125802910 + MIR SINE MIR 82 218 -44 21 0 0 0 chr4 76527516 76527537 -125800810 + AT_rich Low_complexity Low_complexity 1 21 0 2268 78 0 4 chr4 76527925 76528235 -125800112 + AluSq SINE Alu 7 315 0 2189 178 18 50 chr4 76528391 76528886 -125799461 - MER31A LTR ERV1 0 485 7 249 174 29 87 chr4 76529958 76530027 -125798320 - L2 LINE L2 -5 3267 3203 288 160 43 0 chr4 76530072 76530166 -125798181 + (TATAA)n Simple_repeat Simple_repeat 2 99 0 244 235 0 8 chr4 76531271 76531391 -125796956 + CT-rich Low_complexity Low_complexity 1 118 0 191 395 0 37 chr4 76531394 76531503 -125796844 - L2 LINE L2 -14 3258 3154 420 299 167 23 chr4 76532180 76532401 -125795946 - MIR SINE MIR -1 261 9 30 0 0 0 chr4 76532430 76532460 -125795887 + AT_rich Low_complexity Low_complexity 1 30 0 33 25 0 0 chr4 76534579 76534619 -125793728 + AT_rich Low_complexity Low_complexity 1 40 0 1910 141 72 14 chr4 76534812 76535175 -125793172 + MER61B LTR ERV1 13 396 -29 454 267 118 12 chr4 76536190 76536351 -125791996 - MIR SINE MIR -34 228 51 651 328 52 27 chr4 76537863 76538284 -125790063 - LTR16A LTR ERVL -1 456 12 849 307 97 47 chr4 76538884 76539483 -125788864 + HERV16 LTR ERVL 365 993 -4003 2495 63 0 0 chr4 76539486 76539785 -125788562 + AluY SINE Alu 1 299 -12 10687 191 98 21 chr4 76539815 76541754 -125786593 - L1PB3 LINE L1 -1 6210 4420 279 57 0 0 chr4 76541754 76541789 -125786558 - MLT2A1 LTR ERVL 0 444 410 10687 191 98 21 chr4 76541789 76545437 -125782910 - L1PB3 LINE L1 -1791 4420 91 1357 51 0 6 chr4 76545439 76545614 -125782733 + L1P LINE L1 1611 1784 -4362 * 2606 246 20 20 chr4 76545610 76546455 -125781892 - L1PB3 LINE L1 -5219 985 1 740 343 50 21 chr4 76546674 76547158 -125781189 + HERV16 LTR ERVL 2190 2687 -3077 34414 99 26 13 chr4 76547194 76549432 -125778915 + L1PA6 LINE L1 11 2218 -3936 221 57 29 0 chr4 76549432 76549467 -125778880 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 34414 99 26 13 chr4 76549467 76552630 -125775717 + L1PA6 LINE L1 2218 5502 -652 2282 93 0 3 chr4 76552630 76552921 -125775426 + AluY SINE Alu 2 291 -20 34414 99 26 13 chr4 76552921 76553583 -125774764 + L1PA6 LINE L1 5502 6154 0 1140 339 43 0 chr4 76553722 76554165 -125774182 + HERV16 LTR ERVL 2853 3314 -2340 247 279 93 25 chr4 76554212 76554373 -125773974 + L2 LINE L2 2128 2299 -1015 1446 98 3 7 chr4 76554378 76554600 -125773747 + L1MEc LINE L1 2207 2403 -3812 * 1612 76 368 0 chr4 76554596 76554900 -125773447 - L1P LINE L1 -3977 2169 1754 * 3538 54 0 0 chr4 76554895 76555340 -125773007 - L1P LINE L1 -3375 2771 2327 7292 50 1 1 chr4 76555353 76556252 -125772095 + L1PA5 LINE L1 5254 6152 -2 417 214 69 28 chr4 76556253 76556398 -125771949 + MER63 DNA MER1_type 871 1021 -39 764 279 133 48 chr4 76556893 76557291 -125771056 + MER115 DNA AcHobo 21 452 -241 272 160 40 0 chr4 76557289 76557339 -125771008 + Zaphod DNA AcHobo 3979 4030 -1 * 225 45 45 23 chr4 76557862 76557906 -125770441 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 222 62 0 0 chr4 76558270 76558302 -125770045 + (TG)n Simple_repeat Simple_repeat 2 33 0 10629 26 0 0 chr4 76560616 76562645 -125765702 - L1PA4 LINE L1 -2 6153 4132 7349 45 3 0 chr4 76562645 76563560 -125764787 + L1PA4 LINE L1 3198 4115 -2031 533 234 188 64 chr4 76563571 76563853 -125764494 + MLT1H LTR MaLR 200 516 -33 251 238 32 0 chr4 76565458 76565521 -125762826 + L2 LINE L2 3249 3313 0 715 149 26 0 chr4 76566654 76566768 -125761579 + MSTD LTR MaLR 280 396 0 50 65 0 0 chr4 76566808 76566900 -125761447 + AT_rich Low_complexity Low_complexity 1 92 0 426 39 0 0 chr4 76567327 76567379 -125760968 + (CA)n Simple_repeat Simple_repeat 2 53 0 27 0 0 0 chr4 76567636 76567663 -125760684 + AT_rich Low_complexity Low_complexity 1 27 0 1326 175 47 27 chr4 76567668 76567925 -125760422 - AluJo SINE Alu -26 286 25 349 354 42 5 chr4 76567936 76568151 -125760196 + HAL1b LINE L1 422 644 -704 1094 255 47 67 chr4 76568307 76568384 -125759963 + L1MC5 LINE L1 6477 6554 -1407 1249 210 78 31 chr4 76568384 76568483 -125759864 + MLT1A2 LTR MaLR 1 94 -280 198 0 0 0 chr4 76568483 76568505 -125759842 + (ATTAG)n Simple_repeat Simple_repeat 5 26 0 1249 210 78 31 chr4 76568505 76568762 -125759585 + MLT1A2 LTR MaLR 94 374 0 1094 255 47 67 chr4 76568762 76569370 -125758977 + L1MC5 LINE L1 6554 7152 -809 1578 179 77 15 chr4 76569801 76570141 -125758206 + MLT1A1 LTR MaLR 3 363 -2 220 294 24 24 chr4 76570453 76570538 -125757809 + MER5B DNA MER1_type 94 178 0 1258 238 68 6 chr4 76571121 76571457 -125756890 + MER69 DNA AcHobo 1 357 -869 1293 201 88 30 chr4 76571781 76571905 -125756442 + MER69 DNA AcHobo 1846 1961 -565 225 0 0 0 chr4 76571905 76571930 -125756417 + (CA)n Simple_repeat Simple_repeat 1 25 0 1293 201 88 30 chr4 76571930 76572381 -125755966 + MER69 DNA AcHobo 1961 2526 0 3446 147 18 70 chr4 76572914 76573643 -125754704 + LTR8 LTR ERV1 1 691 0 22 0 0 0 chr4 76573773 76573795 -125754552 + AT_rich Low_complexity Low_complexity 1 22 0 950 211 94 42 chr4 76573810 76574118 -125754229 + MER63C DNA MER1_type 44 367 -563 256 302 0 0 chr4 76574447 76574510 -125753837 + GA-rich Low_complexity Low_complexity 1 63 0 202 331 33 58 chr4 76575275 76575396 -125752951 - MIR SINE MIR -69 139 22 1990 140 3 3 chr4 76575566 76575873 -125752474 + AluSx SINE Alu 1 307 -5 400 332 80 35 chr4 76578972 76579198 -125749149 + L2 LINE L2 2590 2825 -489 277 326 20 48 chr4 76579411 76579558 -125748789 - MLT1H LTR MaLR -323 226 84 745 314 74 63 chr4 76579578 76580052 -125748295 + L2 LINE L2 2835 3313 0 250 241 0 0 chr4 76581836 76581894 -125746453 + (TGAA)n Simple_repeat Simple_repeat 3 60 0 22 0 0 0 chr4 76582091 76582113 -125746234 + AT_rich Low_complexity Low_complexity 1 22 0 1958 168 20 18 chr4 76582132 76582532 -125745815 - L1MA8 LINE L1 -2 6289 5889 229 262 107 10 chr4 76582984 76583087 -125745260 + L2 LINE L2 3191 3303 -10 374 285 98 90 chr4 76583103 76583359 -125744988 + HAL1 LINE L1 101 358 -2149 565 317 90 6 chr4 76583899 76584243 -125744104 + HAL1 LINE L1 1198 1570 -937 286 250 86 35 chr4 76584470 76584586 -125743761 + HAL1 LINE L1 1587 1708 -799 180 0 0 0 chr4 76584644 76584664 -125743683 + (T)n Simple_repeat Simple_repeat 1 20 0 311 285 160 40 chr4 76584728 76585031 -125743316 + HAL1 LINE L1 2025 2395 -112 2491 62 0 0 chr4 76585031 76585336 -125743011 + AluY SINE Alu 1 305 -6 311 285 160 40 chr4 76585336 76585457 -125742890 + HAL1 LINE L1 2395 2500 -7 25 0 0 0 chr4 76585457 76585482 -125742865 + AT_rich Low_complexity Low_complexity 1 25 0 243 0 0 0 chr4 76585778 76585805 -125742542 + (TA)n Simple_repeat Simple_repeat 1 27 0 2716 147 22 7 chr4 76585805 76586268 -125742079 + L1MA7 LINE L1 5797 6266 -25 30 69 0 0 chr4 76586985 76587043 -125741304 + AT_rich Low_complexity Low_complexity 1 58 0 22 35 0 0 chr4 76587065 76587094 -125741253 + AT_rich Low_complexity Low_complexity 1 29 0 2089 93 30 20 chr4 76587137 76587438 -125740909 + AluSq SINE Alu 1 304 -9 23 0 0 0 chr4 76587456 76587479 -125740868 + AT_rich Low_complexity Low_complexity 1 23 0 665 299 87 49 chr4 76587506 76588057 -125740290 - L1ME4a LINE L1 -224 5897 5326 1169 217 87 83 chr4 76588730 76589190 -125739157 + MLT1C LTR MaLR 6 467 0 791 252 13 50 chr4 76589298 76589536 -125738811 + MIR SINE MIR 4 232 -30 1494 201 14 79 chr4 76589597 76590014 -125738333 - MLT1B LTR MaLR 0 390 1 189 0 0 0 chr4 76590724 76590745 -125737602 + (TA)n Simple_repeat Simple_repeat 2 22 0 25 31 0 0 chr4 76590882 76590914 -125737433 + AT_rich Low_complexity Low_complexity 1 32 0 474 322 67 91 chr4 76591333 76591700 -125736647 + L3 LINE CR1 293 648 -929 2048 113 3 3 chr4 76591700 76591982 -125736365 - AluSx SINE Alu -30 282 1 474 322 67 91 chr4 76591982 76592089 -125736258 + L3 LINE CR1 648 756 -821 234 276 240 10 chr4 76592292 76592484 -125735863 + L3 LINE CR1 1150 1385 -192 397 307 35 0 chr4 76592495 76592609 -125735738 + L2 LINE L2 3155 3272 0 930 258 28 4 chr4 76593460 76593708 -125734639 + L1MC4 LINE L1 7380 7633 -409 * 9396 184 71 32 chr4 76593702 76596794 -125731553 + L1M1 LINE L1 17 3874 -3691 1987 93 12 99 chr4 76596794 76597126 -125731221 + AluSq SINE Alu 1 303 -10 9396 184 71 32 chr4 76597126 76597202 -125731145 + L1M1 LINE L1 3874 3946 -3619 1499 221 6 8 chr4 76597343 76597705 -125730642 - L1M4 LINE L1 -1467 4679 4319 39898 76 5 7 chr4 76597712 76603873 -125724474 + L1PA5 LINE L1 11 6152 -2 1084 223 38 31 chr4 76603872 76604190 -125724157 - L1M4 LINE L1 -1812 4334 4015 * 6066 112 15 0 chr4 76604201 76605233 -125723114 - L1PA14 LINE L1 -2 6159 5123 4029 188 8 13 chr4 76605233 76606056 -125722291 + L1PA14 LINE L1 4284 5102 -1044 * 15562 89 15 24 chr4 76606055 76609111 -125719236 - L1PA7 LINE L1 -153 6001 2973 2153 214 58 45 chr4 76609106 76609914 -125718433 - L1M4 LINE L1 -2116 4030 3212 * 544 267 94 55 chr4 76610436 76610773 -125717574 - MLT1H LTR MaLR 0 549 136 207 0 0 0 chr4 76611824 76611847 -125716500 + (CA)n Simple_repeat Simple_repeat 2 24 0 14404 102 23 9 chr4 76612148 76614315 -125714032 - L1PA7 LINE L1 -1124 5022 2826 6545 74 14 0 chr4 76614316 76615415 -125712932 + L1PA7 LINE L1 5026 6145 -9 1889 133 10 13 chr4 76615499 76615799 -125712548 + AluSq SINE Alu 1 299 -14 439 242 11 0 chr4 76616671 76616766 -125711581 - MIR SINE MIR -116 146 51 34 72 0 0 chr4 76617293 76617362 -125710985 + AT_rich Low_complexity Low_complexity 1 69 0 1519 260 138 19 chr4 76617444 76617537 -125710810 - HAL1 LINE L1 -1117 1390 1309 2089 98 63 0 chr4 76617537 76617824 -125710523 - AluSp SINE Alu -8 305 1 1519 260 138 19 chr4 76617824 76618425 -125709922 - HAL1 LINE L1 -1198 1309 613 811 255 257 8 chr4 76618433 76618810 -125709537 - HAL1 LINE L1 -1992 515 45 1462 205 0 4 chr4 76619180 76619448 -125708899 + AluJo SINE Alu 1 267 -45 201 94 0 0 chr4 76619555 76619587 -125708760 + (TA)n Simple_repeat Simple_repeat 2 33 0 425 368 4 22 chr4 76619708 76619936 -125708411 + L3b LINE CR1 1107 1330 -253 270 333 56 0 chr4 76620107 76620197 -125708150 + MIR SINE MIR 68 162 -100 611 350 35 12 chr4 76620352 76620606 -125707741 + MIR SINE MIR 2 261 -1 207 269 86 86 chr4 76620647 76620844 -125707503 + L2 LINE L2 3112 3308 -5 292 258 252 13 chr4 76621012 76621171 -125707176 + MIR SINE MIR 66 262 0 247 181 111 56 chr4 76621792 76621864 -125706483 - MADE1 DNA Mariner 0 80 5 266 306 167 9 chr4 76621889 76621997 -125706350 + L2 LINE L2 3179 3303 -10 311 180 11 45 chr4 76623090 76623179 -125705168 + L1MC5 LINE L1 7832 7917 -44 245 353 0 15 chr4 76623453 76623521 -125704826 + MIR SINE MIR 16 82 -126 228 283 0 50 chr4 76623610 76623709 -125704638 + MIR SINE MIR 124 217 -45 2459 40 7 0 chr4 76625847 76626147 -125702200 - L1PA4 LINE L1 -87 6068 5767 290 26 26 0 chr4 76626375 76626414 -125701933 + (CA)n Simple_repeat Simple_repeat 2 41 0 1184 142 12 111 chr4 76626918 76627171 -125701176 + AluJb SINE Alu 84 311 -1 2394 152 52 72 chr4 76627360 76627875 -125700472 - MLT1D LTR MaLR 0 505 1 813 287 37 26 chr4 76627875 76628332 -125700015 + HAL1 LINE L1 1169 1630 -877 30 0 0 0 chr4 76628655 76628685 -125699662 + AT_rich Low_complexity Low_complexity 1 30 0 421 294 84 47 chr4 76628693 76629203 -125699144 + L1ME4a LINE L1 5492 6020 -101 3023 199 53 5 chr4 76629489 76630131 -125698216 - L1MD1 LINE L1 -24 6612 5940 2265 225 30 21 chr4 76630136 76630763 -125697584 - L1MD1 LINE L1 -1959 4581 3949 26 0 0 0 chr4 76630763 76630789 -125697558 + AT_rich Low_complexity Low_complexity 1 26 0 308 365 6 0 chr4 76631309 76631476 -125696871 + (CCA)n Simple_repeat Simple_repeat 1 168 0 3833 196 98 30 chr4 76632130 76632427 -125695920 - L1MD1 LINE L1 -3254 3286 3011 1790 181 3 0 chr4 76632427 76632726 -125695621 - AluJb SINE Alu -12 300 1 3833 196 98 30 chr4 76632726 76634092 -125694255 - L1MD1 LINE L1 -3529 3011 1532 1257 262 44 10 chr4 76634087 76634473 -125693874 - L1MD1 LINE L1 -5366 1174 776 * 646 256 39 0 chr4 76634497 76634653 -125693694 - L1MD1 LINE L1 -6360 180 19 320 317 35 21 chr4 76634667 76634809 -125693538 - L1MC4a LINE L1 -1913 5895 5752 1821 176 0 3 chr4 76634816 76635105 -125693242 - AluJb SINE Alu -24 288 1 745 291 21 3 chr4 76635171 76635456 -125692891 + MER46C DNA MER2_type 2 291 -47 312 298 76 39 chr4 76635660 76636069 -125692278 - L1ME4a LINE L1 -10 6111 5688 1807 139 31 64 chr4 76636181 76636569 -125691778 + THE1C LTR MaLR 1 375 0 2833 120 9 5 chr4 76636569 76636995 -125691352 + THE1C-int LTR MaLR 1 428 -1152 14403 62 4 0 chr4 76636995 76639620 -125688727 - L1PA6 LINE L1 0 6154 3516 9298 78 3 2 chr4 76639620 76640905 -125687442 + L1PA6 LINE L1 2254 3540 -2606 6955 144 33 7 chr4 76640933 76642058 -125686289 + THE1C-int LTR MaLR 427 1580 0 1813 135 34 62 chr4 76642058 76642444 -125685903 + THE1C LTR MaLR 1 375 0 1461 185 98 0 chr4 76642604 76642722 -125685625 + AluJb SINE Alu 3 108 -204 191 36 36 0 chr4 76642722 76642750 -125685597 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1461 185 98 0 chr4 76642750 76642907 -125685440 + AluJb SINE Alu 108 305 -7 242 340 45 32 chr4 76642929 76643085 -125685262 + MIR3 SINE MIR 42 199 -9 403 278 37 9 chr4 76643349 76643457 -125684890 + MIR SINE MIR 59 169 -93 1892 147 0 35 chr4 76643550 76643862 -125684485 - MER1B DNA MER1_type 0 339 39 30 0 0 0 chr4 76644024 76644054 -125684293 + AT_rich Low_complexity Low_complexity 1 30 0 10046 186 18 4 chr4 76644054 76647219 -125681128 - L1PB1 LINE L1 -3 6864 3657 2458 114 8 38 chr4 76647199 76647594 -125680753 - L1PB1 LINE L1 -5847 1016 634 * 1190 160 0 0 chr4 76647594 76647794 -125680553 - L1PB1 LINE L1 -6663 200 1 257 282 81 16 chr4 76648816 76648940 -125679407 + MIR SINE MIR 131 262 0 * 398 339 110 31 chr4 76648916 76649362 -125678985 - L2 LINE L2 -7 3306 2826 457 302 113 37 chr4 76649963 76650138 -125678209 - L1MC4a LINE L1 -1909 5899 5739 306 50 0 0 chr4 76650138 76650178 -125678169 + (TG)n Simple_repeat Simple_repeat 2 41 0 457 302 113 37 chr4 76650178 76650579 -125677768 - L1MC4a LINE L1 -2069 5739 5282 486 0 0 0 chr4 76651269 76651323 -125677024 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 1068 163 74 51 chr4 76651623 76651677 -125676670 + LTR9B LTR ERV1 425 476 -168 2074 117 0 7 chr4 76651677 76651977 -125676370 + AluSx SINE Alu 1 298 -14 1068 163 74 51 chr4 76651977 76652137 -125676210 + LTR9B LTR ERV1 476 644 0 22 0 0 0 chr4 76652508 76652530 -125675817 + AT_rich Low_complexity Low_complexity 1 22 0 394 307 80 23 chr4 76652869 76653045 -125675302 + L3b LINE CR1 1395 1580 -3 260 183 217 0 chr4 76653237 76653297 -125675050 + Tigger5 DNA MER2_type 2251 2323 0 396 283 101 0 chr4 76653364 76653502 -125674845 + L2 LINE L2 3116 3267 -5 775 246 71 29 chr4 76653647 76653832 -125674515 + MIR SINE MIR 1 200 -62 1187 201 25 110 chr4 76653832 76654231 -125674116 + MLT1A1 LTR MaLR 1 365 0 775 246 71 29 chr4 76654231 76654285 -125674062 + MIR SINE MIR 200 250 -12 183 222 0 0 chr4 76654409 76654445 -125673902 + L3 LINE CR1 1506 1541 -36 22 35 0 0 chr4 76654724 76654753 -125673594 + AT_rich Low_complexity Low_complexity 1 29 0 241 310 113 19 chr4 76655051 76655288 -125673059 + LTR33A LTR ERVL 130 398 -123 876 238 0 0 chr4 76656794 76656962 -125671385 - MER5A DNA MER1_type -4 185 18 267 286 174 82 chr4 76657294 76657588 -125670759 - L2 LINE L2 -404 2910 2590 515 155 24 2 chr4 76658057 76658153 -125670194 + MLT1B LTR MaLR 276 380 -2 539 182 227 0 chr4 76658167 76658299 -125670048 + MLT1E3 LTR MaLR 458 619 -5 6562 64 5 7 chr4 76658315 76659175 -125669172 + L1PA8 LINE L1 5308 6165 -7 22 80 0 0 chr4 76659560 76659610 -125668737 + AT_rich Low_complexity Low_complexity 1 50 0 2482 62 0 10 chr4 76659868 76660177 -125668170 + AluY SINE Alu 1 306 -5 1494 119 76 7 chr4 76660263 76660540 -125667807 - L1MA8 LINE L1 -3 6288 5993 21 0 0 0 chr4 76661060 76661081 -125667266 + AT_rich Low_complexity Low_complexity 1 21 0 613 241 124 101 chr4 76661868 76662382 -125665965 - LTR67 LTR ERVL -3 554 29 220 361 45 15 chr4 76662515 76662648 -125665699 + MIR SINE MIR 17 153 -109 302 213 38 36 chr4 76662796 76662935 -125665412 - L1MC5 LINE L1 -17 8025 7807 345 244 110 63 chr4 76662982 76663408 -125664939 - L1MC4 LINE L1 -568 7474 6962 312 237 13 0 chr4 76663495 76663571 -125664776 - L1MC4 LINE L1 -1040 7002 6926 32 0 0 0 chr4 76663648 76663680 -125664667 + AT_rich Low_complexity Low_complexity 1 32 0 1505 178 152 6 chr4 76664072 76664387 -125663960 - MLT1A1 LTR MaLR -4 361 1 39585 77 13 1 chr4 76664714 76670768 -125657579 + L1PA5 LINE L1 11 6140 -14 4378 130 290 107 chr4 76671197 76672631 -125655716 - pTR5 LTR ERV1 0 2438 743 528 296 49 55 chr4 76673816 76674289 -125654058 - Charlie4 DNA MER1_type -862 1099 630 631 227 78 0 chr4 76674984 76675138 -125653209 - MIR SINE MIR -88 174 9 324 157 29 0 chr4 76675465 76675535 -125652812 - THE1C LTR MaLR 0 364 293 27071 111 13 14 chr4 76675560 76681232 -125647115 - L1PA7 LINE L1 -14 6455 761 4284 82 44 6 chr4 76681232 76682309 -125646038 + MER11A LTR ERVK 2 1266 0 4661 129 26 0 chr4 76682309 76683048 -125645299 - L1PA7 LINE L1 -5696 765 8 1035 117 0 23 chr4 76683060 76683231 -125645116 - THE1C LTR MaLR -60 315 149 950 110 0 120 chr4 76683252 76683452 -125644895 - THE1C LTR MaLR -199 176 1 9413 128 49 12 chr4 76683452 76684973 -125643374 - THE1C-int LTR MaLR 0 1580 4 2403 138 8 13 chr4 76684976 76685353 -125642994 - THE1C LTR MaLR 0 375 1 822 305 58 27 chr4 76685883 76686316 -125642031 + L2 LINE L2 2339 2836 -478 257 194 97 39 chr4 76686337 76686440 -125641907 - MLT1I LTR MaLR -25 384 276 23 0 0 0 chr4 76686499 76686522 -125641825 + AT_rich Low_complexity Low_complexity 1 23 0 483 242 194 13 chr4 76686640 76686950 -125641397 - L1M4 LINE L1 -1377 4769 4404 21 0 0 0 chr4 76687049 76687070 -125641277 + AT_rich Low_complexity Low_complexity 1 21 0 184 281 125 0 chr4 76687863 76687927 -125640420 + L2 LINE L2 262 333 -2981 189 0 0 0 chr4 76689318 76689339 -125639008 + (ATG)n Simple_repeat Simple_repeat 3 23 0 575 191 69 0 chr4 76689489 76689662 -125638685 - L1MA8 LINE L1 -10 6281 6097 1696 178 43 0 chr4 76689803 76690079 -125638268 - AluSx SINE Alu -24 288 1 366 78 47 0 chr4 76690079 76690143 -125638204 - L1MA8 LINE L1 -178 6113 6047 25 0 0 0 chr4 76690255 76690280 -125638067 + AT_rich Low_complexity Low_complexity 1 25 0 252 0 0 0 chr4 76691300 76691328 -125637019 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 243 61 0 0 chr4 76692611 76692644 -125635703 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 20854 97 6 1 chr4 76692645 76696458 -125631889 - L1PA7 LINE L1 -16 6453 2625 27493 71 12 2 chr4 76696657 76701341 -125627006 - L1PA6 LINE L1 0 6154 1427 3209 158 26 0 chr4 76701339 76701885 -125626462 - L1PA6 LINE L1 -5576 570 11 * 10012 121 50 4 chr4 76701928 76703574 -125624773 - L1PA7 LINE L1 -4734 1727 5 352 241 210 12 chr4 76703910 76704072 -125624275 - MIR SINE MIR -64 198 5 652 250 98 29 chr4 76704481 76704685 -125623662 + MIR SINE MIR 45 262 0 197 65 32 0 chr4 76705403 76705434 -125622913 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 23 68 0 0 chr4 76705508 76705552 -125622795 + AT_rich Low_complexity Low_complexity 1 44 0 727 220 50 6 chr4 76706239 76706398 -125621949 - FRAM SINE Alu 0 166 1 285 350 0 0 chr4 76706889 76706986 -125621361 - MIR SINE MIR -90 172 76 452 135 52 0 chr4 76706995 76707091 -125621256 + MER89 LTR ERV1 1 101 -458 874 199 31 86 chr4 76707109 76707491 -125620856 - L1M4 LINE L1 -1077 5069 4709 331 130 0 0 chr4 76707503 76707549 -125620798 + (T)n Simple_repeat Simple_repeat 1 46 0 1675 201 122 21 chr4 76708716 76709363 -125618984 - Charlie1a DNA MER1_type -68 1387 641 1192 257 27 19 chr4 76709354 76709727 -125618620 - Charlie1a DNA MER1_type -1049 406 31 * 547 197 197 26 chr4 76709774 76709926 -125618421 - MER5A DNA MER1_type -3 186 9 796 234 19 24 chr4 76709941 76710150 -125618197 - MER3 DNA MER1_type 0 209 2 356 231 52 45 chr4 76711695 76711829 -125616518 + MER102a DNA MER1_type 181 315 -15 2906 164 21 30 chr4 76712025 76712587 -125615760 + MER41D LTR ERV1 1 557 0 2381 113 8 24 chr4 76712591 76712961 -125615386 + THE1B LTR MaLR 1 364 0 417 319 0 21 chr4 76714780 76714924 -125613423 - MIR3 SINE MIR -14 194 54 2568 136 36 2 chr4 76714993 76715404 -125612943 - MSTA LTR MaLR -1 427 3 26 30 0 0 chr4 76716735 76716768 -125611579 + AT_rich Low_complexity Low_complexity 1 33 0 1737 179 57 80 chr4 76717402 76717826 -125610521 + MLT2D LTR ERVL 1 414 0 236 286 0 16 chr4 76718149 76718212 -125610135 + CT-rich Low_complexity Low_complexity 3 64 0 21 0 0 0 chr4 76718452 76718473 -125609874 + AT_rich Low_complexity Low_complexity 1 21 0 4662 111 10 3 chr4 76718478 76719199 -125609148 - L1PA14 LINE L1 -131 6030 5305 1486 127 0 0 chr4 76719198 76719442 -125608905 + L1P LINE L1 3531 3774 -2372 * 3729 200 70 98 chr4 76719442 76720587 -125607760 - MER52A LTR ERV1 -536 1219 29 3279 183 22 0 chr4 76720590 76721266 -125607081 + L1P LINE L1 4594 5284 -862 339 129 0 16 chr4 76721291 76721353 -125606994 + MER116 DNA Mariner 5 65 -15 253 322 49 21 chr4 76722608 76722751 -125605596 + L3 LINE CR1 1166 1312 -265 461 277 35 56 chr4 76722803 76723034 -125605313 + MER102b DNA MER1_type 103 328 -13 221 280 226 27 chr4 76723033 76723219 -125605128 + L3 LINE CR1 1351 1573 -4 * 200 0 65 0 chr4 76723274 76723305 -125605042 + (TTTTA)n Simple_repeat Simple_repeat 2 180 0 2193 109 3 0 chr4 76723305 76723589 -125604758 - AluSq SINE Alu -1 315 1 46 19 0 0 chr4 76723589 76723642 -125604705 + AT_rich Low_complexity Low_complexity 1 53 0 864 315 145 22 chr4 76723732 76724551 -125603796 - L2 LINE L2 0 3313 2377 199 339 18 80 chr4 76724661 76724773 -125603574 - L2 LINE L2 -93 3179 3075 191 328 0 0 chr4 76724926 76724987 -125603360 - L3b LINE CR1 -387 1196 1136 2109 94 4 0 chr4 76725594 76725859 -125602488 - AluSq SINE Alu -15 298 33 735 238 47 19 chr4 76727545 76727759 -125600588 - MIR SINE MIR -42 220 1 393 262 103 0 chr4 76728045 76728152 -125600195 + MIR SINE MIR 49 166 -96 3720 122 136 107 chr4 76728156 76729488 -125598859 - pTR5 LTR ERV1 0 2438 743 223 235 132 0 chr4 76729490 76729558 -125598789 + MIR SINE MIR 161 237 -25 479 242 33 8 chr4 76729604 76729724 -125598623 - MIR SINE MIR -24 238 116 196 272 12 86 chr4 76729806 76729887 -125598460 - MIR SINE MIR -168 94 20 25 31 0 0 chr4 76730670 76730702 -125597645 + AT_rich Low_complexity Low_complexity 1 32 0 401 304 67 59 chr4 76730862 76731115 -125597232 - L2 LINE L2 0 3313 3059 2365 98 7 3 chr4 76731303 76731610 -125596737 + AluSq SINE Alu 1 308 -5 386 257 29 101 chr4 76734200 76734476 -125593871 - MIR SINE MIR -3 259 4 1528 151 64 84 chr4 76734659 76735016 -125593331 - MSTD LTR MaLR -2 394 45 199 342 93 31 chr4 76735200 76735361 -125592986 + MIR SINE MIR 92 262 0 183 80 0 0 chr4 76735534 76735559 -125592788 + (CA)n Simple_repeat Simple_repeat 1 25 0 20691 190 26 20 chr4 76737395 76738484 -125589863 - L1PA13 LINE L1 0 7601 6520 2371 64 41 0 chr4 76738484 76738779 -125589568 - AluY SINE Alu -4 307 1 20691 190 26 20 chr4 76738779 76744453 -125583894 - L1PA13 LINE L1 -1081 6520 1 479 215 67 51 chr4 76745491 76745686 -125582661 - MER74B LTR ERVL -3 619 422 483 226 33 37 chr4 76745718 76745930 -125582417 - LTR1 LTR ERV1 -580 205 1 305 331 31 8 chr4 76747109 76747236 -125581111 - MIR SINE MIR -124 138 9 5081 93 3 18 chr4 76747372 76747710 -125580637 - L1P LINE L1 -1401 4745 4403 2298 104 0 0 chr4 76747710 76748017 -125580330 - AluY SINE Alu -4 307 1 5081 93 3 18 chr4 76748017 76748454 -125579893 - L1P LINE L1 -1743 4403 3982 6879 75 4 0 chr4 76748457 76749883 -125578464 + L1PA8 LINE L1 4739 6168 -4 218 366 45 0 chr4 76750472 76750584 -125577763 + MIR3 SINE MIR 4 120 -88 1666 163 49 10 chr4 76750842 76751130 -125577217 - AluJo SINE Alu -13 299 1 2315 74 0 3 chr4 76751515 76751835 -125576512 + AluSq SINE Alu 1 319 0 210 130 0 43 chr4 76753270 76753316 -125575031 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 367 343 21 28 chr4 76753716 76753859 -125574488 + MIR3 SINE MIR 19 160 -48 23 68 0 0 chr4 76753994 76754038 -125574309 + AT_rich Low_complexity Low_complexity 1 44 0 320 203 49 32 chr4 76754188 76754311 -125574036 - L1ME4a LINE L1 -189 5932 5808 29 28 0 0 chr4 76754369 76754405 -125573942 + AT_rich Low_complexity Low_complexity 1 36 0 267 300 36 0 chr4 76754412 76754522 -125573825 - L1ME4a LINE L1 -362 5759 5646 1800 207 84 39 chr4 76754528 76755041 -125573306 - MLT1F LTR MaLR -6 536 1 1422 234 22 43 chr4 76755853 76756463 -125571884 - L1PBa LINE L1 -4299 2563 1918 2034 274 52 30 chr4 76756520 76757152 -125571195 - L1PBa LINE L1 -6141 711 66 26092 118 45 8 chr4 76757158 76757330 -125571017 - L1P LINE L1 -1653 4493 4329 2143 75 7 65 chr4 76757330 76757680 -125570667 + AluY SINE Alu 1 311 0 26092 118 45 8 chr4 76757680 76758477 -125569870 - L1P LINE L1 -1817 4329 3563 17347 50 6 0 chr4 76758477 76761478 -125566869 - L1PA5 LINE L1 -13 6141 3162 26092 118 45 8 chr4 76761478 76764829 -125563518 - L1P LINE L1 -2583 3563 11 3434 228 30 12 chr4 76764836 76765855 -125562492 - L1 LINE L1 -2577 3569 2532 1482 162 42 80 chr4 76765956 76766599 -125561748 + L1P5 LINE L1 4899 5493 -663 1738 132 59 36 chr4 76766602 76766958 -125561389 + THE1B LTR MaLR 1 364 0 22526 60 4 10 chr4 76767063 76770845 -125557502 + L1PA5 LINE L1 2249 6003 -151 984 238 55 0 chr4 76771013 76771248 -125557099 + MER44D DNA MER2_type 3 250 -455 708 111 146 58 chr4 76771251 76771422 -125556925 - MER4C LTR ERV1 -3 462 277 2192 113 34 77 chr4 76771440 76771882 -125556465 - MER4A LTR ERV1 -241 423 1 2434 148 67 21 chr4 76771882 76772348 -125555999 + MER44D DNA MER2_type 247 605 0 972 214 20 46 chr4 76772348 76772649 -125555698 + Charlie2a DNA MER1_type 1710 2002 -860 1192 253 151 21 chr4 76772661 76773178 -125555169 - MLT1E LTR MaLR -8 585 2 201 167 28 0 chr4 76773469 76773505 -125554842 + (CA)n Simple_repeat Simple_repeat 2 38 0 476 239 129 6 chr4 76774299 76774462 -125553885 - L2 LINE L2 0 3313 3131 1191 233 74 177 chr4 76777146 76777306 -125551041 - L2 LINE L2 -251 3062 2887 763 176 192 6 chr4 76777306 76777488 -125550859 + MER20 DNA MER1_type 4 219 0 1191 233 74 177 chr4 76777488 76777712 -125550635 - L2 LINE L2 -426 2887 2641 13993 32 6 0 chr4 76777712 76780172 -125548175 - L1PA4 LINE L1 -8 6147 3677 1046 8 0 8 chr4 76780172 76780300 -125548047 + L1PA4 LINE L1 3566 3692 -2454 1191 233 74 177 chr4 76780300 76780695 -125547652 - L2 LINE L2 -670 2643 2243 23 0 0 0 chr4 76780941 76780964 -125547383 + AT_rich Low_complexity Low_complexity 1 23 0 303 215 35 81 chr4 76781128 76781300 -125547047 + MER104 DNA Tc2 16 179 -1 723 226 186 47 chr4 76781751 76782052 -125546295 + L2 LINE L2 2468 2810 -504 308 281 56 0 chr4 76782727 76782816 -125545531 + L2 LINE L2 3210 3303 -10 1368 202 18 22 chr4 76782816 76783088 -125545259 + AluJo SINE Alu 1 271 -41 216 0 0 0 chr4 76783094 76783118 -125545229 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 2516 91 3 28 chr4 76784284 76784648 -125543699 + THE1A LTR MaLR 1 355 0 10693 96 43 4 chr4 76784648 76786169 -125542178 + THE1A-int LTR MaLR 1 1580 0 2622 86 14 0 chr4 76786169 76786519 -125541828 + THE1A LTR MaLR 1 355 0 1855 170 0 26 chr4 76788136 76788442 -125539905 + AluSx SINE Alu 3 300 -12 430 283 33 20 chr4 76788612 76788764 -125539583 - Charlie7 DNA MER1_type -2249 363 210 778 289 25 21 chr4 76788771 76789010 -125539337 - MIR SINE MIR -8 254 15 398 222 35 64 chr4 76789020 76789191 -125539156 - Charlie7 DNA MER1_type -2394 218 53 1792 196 28 6 chr4 76789898 76790255 -125538092 - MLT1A1 LTR MaLR 0 365 1 1346 232 41 48 chr4 76790345 76790738 -125537609 + MLT1B LTR MaLR 1 390 0 1967 143 0 35 chr4 76790975 76791312 -125537035 + AluSg SINE Alu 1 326 0 416 260 71 58 chr4 76791727 76791881 -125536466 - MLT1I LTR MaLR -9 400 245 1038 237 111 44 chr4 76791957 76792299 -125536048 + MLT1A1 LTR MaLR 1 365 0 14628 167 28 7 chr4 76792315 76796133 -125532214 - L1 LINE L1 -1655 5910 1969 2210 121 3 0 chr4 76796133 76796430 -125531917 + AluSq SINE Alu 1 298 -15 14628 167 28 7 chr4 76796430 76797390 -125530957 - L1 LINE L1 -5596 1969 1031 5850 60 1 81 chr4 76797390 76798238 -125530109 - LTR17 LTR ERV1 0 780 1 13186 68 2 0 chr4 76798238 76799960 -125528387 - HERV17 LTR ERV1 0 8626 6902 * 26814 48 3 3 chr4 76799951 76803341 -125525006 - HERV17 LTR ERV1 -3559 5067 1679 5530 48 3 12 chr4 76803338 76804063 -125524284 - HERV17 LTR ERV1 -6762 1864 1147 * 1394 78 0 0 chr4 76804061 76804241 -125524106 - HERV17 LTR ERV1 -8446 180 1 * 5873 74 29 3 chr4 76804241 76805001 -125523346 - LTR17 LTR ERV1 0 780 1 5571 181 23 2 chr4 76805001 76806009 -125522338 - L1 LINE L1 -6531 1034 6 228 158 53 13 chr4 76806013 76806089 -125522258 + L1ME1 LINE L1 6083 6161 -5 1844 173 158 45 chr4 76806566 76807033 -125521314 + MLT2B1 LTR ERVL 1 520 0 418 261 17 17 chr4 76807292 76807407 -125520940 - MIR SINE MIR -48 214 100 196 216 0 0 chr4 76808488 76808525 -125519822 + L2 LINE L2 3262 3298 -15 340 191 0 0 chr4 76809248 76809311 -125519036 + MER94 DNA DNA 4 66 -68 1193 133 0 0 chr4 76809855 76810028 -125518319 + FRAM SINE Alu 1 172 -4 21 71 0 0 chr4 76810210 76810252 -125518095 + AT_rich Low_complexity Low_complexity 1 42 0 425 190 10 0 chr4 76810889 76810989 -125517358 + GA-rich Low_complexity Low_complexity 2 102 0 346 309 65 0 chr4 76811202 76811325 -125517022 + MIR SINE MIR 71 201 -61 21 0 0 0 chr4 76811718 76811739 -125516608 + AT_rich Low_complexity Low_complexity 1 21 0 2299 71 0 0 chr4 76811743 76812060 -125516287 + AluY SINE Alu 1 317 0 1135 200 68 20 chr4 76812078 76812328 -125516019 + AluJo SINE Alu 14 275 -37 2380 89 0 0 chr4 76813305 76813609 -125514738 + AluY SINE Alu 1 304 -7 325 365 64 0 chr4 76815592 76815795 -125512552 - MER102a DNA MER1_type -12 318 103 2124 228 104 13 chr4 76815825 76816374 -125511973 + MER77 LTR ERV1 3 601 -4 265 393 33 16 chr4 76816927 76817049 -125511298 - L2 LINE L2 -8 3264 3141 1795 182 21 43 chr4 76817098 76817472 -125510875 + MER44D DNA MER2_type 2 422 -183 503 271 7 49 chr4 76817725 76817869 -125510478 - MER52A LTR ERV1 -512 1243 1106 714 172 104 175 chr4 76817873 76818211 -125510136 - LTR28 LTR ERV1 -676 344 1 * 879 136 39 0 chr4 76818211 76818360 -125509987 + MER44D DNA MER2_type 417 571 -38 1769 155 25 6 chr4 76819711 76820033 -125508314 + MLT2D LTR ERVL 1 328 -86 247 173 29 58 chr4 76820057 76820196 -125508151 + (TATAA)n Simple_repeat Simple_repeat 3 137 0 21 36 0 0 chr4 76820262 76820290 -125508057 + AT_rich Low_complexity Low_complexity 1 28 0 230 336 14 70 chr4 76820604 76820747 -125507600 - MIR SINE MIR -58 150 16 33 0 0 0 chr4 76820965 76820998 -125507349 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr4 76821348 76821372 -125506975 + AT_rich Low_complexity Low_complexity 1 24 0 2600 88 10 23 chr4 76821483 76821838 -125506509 - L1PB1 LINE L1 0 6151 5800 252 0 0 0 chr4 76821838 76821866 -125506481 + (TG)n Simple_repeat Simple_repeat 2 29 0 2600 88 10 23 chr4 76821866 76821894 -125506453 - L1PB1 LINE L1 -351 5800 5773 328 167 13 13 chr4 76821905 76821983 -125506364 + (TA)n Simple_repeat Simple_repeat 1 78 0 2841 85 7 7 chr4 76821983 76822395 -125505952 - L1PB1 LINE L1 -360 5791 5380 2163 205 68 34 chr4 76822405 76822960 -125505387 - MLT1E2 LTR MaLR -1 625 52 24 0 0 0 chr4 76823234 76823258 -125505089 + AT_rich Low_complexity Low_complexity 1 24 0 463 228 0 0 chr4 76823338 76823430 -125504917 + L2 LINE L2 3222 3313 0 766 330 88 34 chr4 76823538 76824095 -125504252 - HAL1 LINE L1 -805 1702 1116 1885 94 99 4 chr4 76824166 76824182 -125504165 - AluSg SINE Alu 0 310 297 253 0 0 0 chr4 76824182 76824210 -125504137 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1885 94 99 4 chr4 76824210 76824461 -125503886 - AluSg SINE Alu -13 297 7 435 315 21 0 chr4 76827009 76827152 -125501195 + MIR SINE MIR 111 256 -6 2079 127 19 10 chr4 76827234 76827579 -125500768 + AluSq SINE Alu 3 350 0 235 301 115 93 chr4 76827673 76828091 -125500256 + L2 LINE L2 2830 3256 -16 2345 93 0 0 chr4 76828209 76828510 -125499837 + AluY SINE Alu 1 301 -10 551 197 115 44 chr4 76828534 76828717 -125499630 - LTR16C LTR ERVL 0 491 296 576 275 90 11 chr4 76829300 76829478 -125498869 - MIR SINE MIR 0 262 71 2493 96 0 0 chr4 76829670 76829983 -125498364 - AluSp SINE Alu 0 313 1 25 0 0 0 chr4 76830198 76830223 -125498124 + AT_rich Low_complexity Low_complexity 1 25 0 554 233 62 0 chr4 76830838 76830967 -125497380 + LTR33 LTR ERVL 15 151 -370 358 268 10 41 chr4 76831015 76831112 -125497235 - L2 LINE L2 0 3272 3179 1140 212 7 0 chr4 76831173 76831546 -125496801 + L1PA15-16 LINE L1 3 1563 -5286 * 13024 211 26 35 chr4 76831532 76835097 -125493250 + L1P5 LINE L1 1336 4944 -1915 2420 77 0 7 chr4 76835097 76835396 -125492951 + AluY SINE Alu 1 297 -14 13024 211 26 35 chr4 76835396 76836638 -125491709 + L1P5 LINE L1 4944 6196 -663 2255 104 51 25 chr4 76836641 76836996 -125491351 + THE1B LTR MaLR 1 364 0 1925 119 13 3 chr4 76837206 76837508 -125490839 + L1P5 LINE L1 6217 6521 -338 369 296 0 0 chr4 76837493 76837591 -125490756 + L1 LINE L1 3550 3647 -2499 * 1864 177 0 14 chr4 76837591 76837947 -125490400 + L1PA16 LINE L1 5800 6150 -16 2034 185 22 5 chr4 76838029 76838439 -125489908 + L1MB5 LINE L1 5750 6166 -8 1706 165 14 21 chr4 76838640 76838925 -125489422 - AluJo SINE Alu -20 292 10 21 0 0 0 chr4 76839144 76839165 -125489182 + AT_rich Low_complexity Low_complexity 1 21 0 752 267 57 8 chr4 76839242 76839489 -125488858 - MIR SINE MIR -2 260 2 2228 86 3 3 chr4 76840433 76840723 -125487624 + AluSc SINE Alu 1 290 -19 181 287 92 0 chr4 76841085 76841172 -125487175 + MIR SINE MIR 108 202 -60 * 183 280 20 0 chr4 76841157 76841207 -125487140 + L2 LINE L2 3210 3260 -12 189 171 0 0 chr4 76842180 76842215 -125486132 + GA-rich Low_complexity Low_complexity 6 40 0 256 238 32 0 chr4 76843242 76843305 -125485042 - MLT1J LTR MaLR -391 120 56 806 176 97 0 chr4 76843315 76843476 -125484871 + MER58B DNA MER1_type 2 178 -163 2999 189 24 25 chr4 76843476 76844170 -125484177 + Tigger7 DNA MER2_type 1 2587 0 898 180 19 6 chr4 76844170 76844331 -125484016 + MER58B DNA MER1_type 177 339 -2 1264 213 89 20 chr4 76844476 76844989 -125483358 - MLT1F LTR MaLR -1 541 1 380 276 0 0 chr4 76845114 76845201 -125483146 + MER117 DNA MER1_type 2 88 -109 206 234 0 0 chr4 76845383 76845430 -125482917 + CT-rich Low_complexity Low_complexity 2 48 0 764 201 0 0 chr4 76845475 76845609 -125482738 + FLAM_C SINE Alu 1 134 -9 334 220 189 15 chr4 76845919 76846051 -125482296 + MER103 DNA DNA 2 156 -10 442 67 27 0 chr4 76846406 76846481 -125481866 + (TG)n Simple_repeat Simple_repeat 2 78 0 1990 132 3 3 chr4 76848627 76848922 -125479425 + AluSc SINE Alu 1 295 -14 401 285 61 30 chr4 76849014 76849179 -125479168 + MIR SINE MIR 61 230 -32 181 361 37 19 chr4 76849347 76849455 -125478892 - MIR SINE MIR -78 130 21 2177 166 37 58 chr4 76850797 76851261 -125477086 + MLT1C LTR MaLR 1 454 -13 2421 77 0 7 chr4 76851269 76851569 -125476778 + AluY SINE Alu 1 298 -13 604 189 176 9 chr4 76851576 76851809 -125476538 - Charlie2b DNA MER1_type -845 1937 1666 550 175 43 99 chr4 76851878 76851956 -125476391 - LTR37A LTR ERV1 0 426 345 1875 135 36 60 chr4 76851956 76852340 -125476007 + THE1C LTR MaLR 1 375 0 550 175 43 99 chr4 76852340 76852472 -125475875 - LTR37A LTR ERV1 -81 345 228 1671 188 0 7 chr4 76852493 76852775 -125475572 - AluJb SINE Alu -20 292 13 303 214 107 80 chr4 76852781 76852893 -125475454 - LTR37A LTR ERV1 -262 164 50 813 241 17 112 chr4 76853079 76853534 -125474813 - MER31-int LTR ERV1 -911 4896 3651 2324 97 0 0 chr4 76853704 76854015 -125474332 + AluY SINE Alu 1 311 0 1033 235 41 63 chr4 76854203 76854269 -125474078 - LTR37A LTR ERV1 -4 422 356 2146 116 13 3 chr4 76854269 76854571 -125473776 - AluSq SINE Alu -6 307 3 1033 235 41 63 chr4 76854571 76854916 -125473431 - LTR37A LTR ERV1 -70 356 20 234 282 18 36 chr4 76855673 76855783 -125472564 - L1ME LINE L1 -385 5736 5629 417 311 44 14 chr4 76857607 76857900 -125470447 - L1ME LINE L1 -597 5567 5266 405 314 87 10 chr4 76858291 76858623 -125469724 - L1ME LINE L1 -1293 4853 4548 2201 103 7 0 chr4 76858623 76858913 -125469434 + AluSq SINE Alu 1 292 -21 405 314 87 10 chr4 76858913 76859176 -125469171 - L1ME LINE L1 -1598 4548 4212 565 322 142 31 chr4 76860356 76861206 -125467141 + L2 LINE L2 1483 2427 -887 851 152 122 0 chr4 76861240 76861404 -125466943 + MER3 DNA MER1_type 1 184 -25 245 288 175 0 chr4 76862256 76862336 -125466011 + MIR SINE MIR 60 153 -109 298 326 0 0 chr4 76862361 76862447 -125465900 + GA-rich Low_complexity Low_complexity 3 88 0 214 309 31 10 chr4 76862771 76862868 -125465479 + MIR SINE MIR 160 258 -4 575 269 8 8 chr4 76863046 76863176 -125465171 + L2 LINE L2 3134 3263 -9 274 407 36 0 chr4 76863457 76863624 -125464723 - L2 LINE L2 -430 2884 2712 229 292 62 0 chr4 76863618 76863683 -125464664 + MIR3 SINE MIR 132 200 -8 * 201 39 0 0 chr4 76863724 76863750 -125464597 + (TG)n Simple_repeat Simple_repeat 1 26 0 591 243 186 69 chr4 76863776 76864110 -125464237 - MLT1J1 LTR MaLR -21 425 53 1069 184 11 5 chr4 76864691 76864881 -125463466 - MLT1C LTR MaLR 0 467 277 303 284 25 163 chr4 76866707 76867027 -125461320 + L2 LINE L2 2987 3262 -10 998 113 0 28 chr4 76867213 76867355 -125460992 + AluSq/x SINE Alu 1 138 -174 1991 127 0 0 chr4 76867472 76867740 -125460607 - AluSq SINE Alu -45 268 1 2757 210 16 7 chr4 76868109 76868670 -125459677 + L1M2 LINE L1 1188 1753 -5096 1266 97 0 43 chr4 76868672 76868858 -125459489 + AluSc SINE Alu 1 178 -131 250 208 57 0 chr4 76868958 76869011 -125459336 - MER3 DNA MER1_type -153 56 1 1031 160 122 4 chr4 76869057 76869294 -125459053 - L1MD3 LINE L1 0 7995 7731 1091 203 153 32 chr4 76869347 76869444 -125458903 + MER58B DNA MER1_type 2 86 -2334 1720 157 36 16 chr4 76869444 76869749 -125458598 + AluJb SINE Alu 1 311 -1 1091 203 153 32 chr4 76869749 76869932 -125458415 + MER58B DNA MER1_type 86 316 -25 25 0 0 0 chr4 76870111 76870136 -125458211 + AT_rich Low_complexity Low_complexity 1 25 0 459 313 6 22 chr4 76870764 76870946 -125457401 + CT-rich Low_complexity Low_complexity 1 179 0 461 308 145 0 chr4 76871158 76871385 -125456962 - L1MC4 LINE L1 -364 7678 7419 1368 184 8 4 chr4 76871395 76871629 -125456718 + AluJo SINE Alu 1 235 -77 306 0 0 0 chr4 76871826 76871860 -125456487 + (TA)n Simple_repeat Simple_repeat 2 35 0 855 75 0 0 chr4 76871860 76871967 -125456380 - AluSg/x SINE Alu -8 301 195 905 167 17 29 chr4 76872016 76872190 -125456157 + AluJo SINE Alu 127 298 -14 1387 168 56 66 chr4 76872788 76873074 -125455273 - AluJo SINE Alu -29 283 1 614 201 8 15 chr4 76873080 76873214 -125455133 - FLAM_C SINE Alu 0 133 1 2035 32 48 4 chr4 76873470 76873720 -125454627 - AluY SINE Alu -26 285 25 2223 158 55 25 chr4 76873798 76874202 -125454145 - MSTC LTR MaLR -12 416 1 660 86 32 0 chr4 76874279 76874372 -125453975 - AluSg/x SINE Alu -24 288 193 234 164 0 36 chr4 76874493 76874548 -125453799 + T-rich Low_complexity Low_complexity 3 55 0 431 141 14 0 chr4 76876919 76876990 -125451357 - FLAM SINE Alu -18 125 54 574 199 122 0 chr4 76876991 76877122 -125451225 - MER21B LTR ERV1 -716 147 1 1694 213 99 8 chr4 76877421 76877971 -125450376 + MER82 DNA MER2_type 2 647 -6 2277 101 0 13 chr4 76878975 76879281 -125449066 + AluSx SINE Alu 1 302 -10 2148 116 3 0 chr4 76879282 76879574 -125448773 + AluSx SINE Alu 2 294 -18 2016 93 19 11 chr4 76879922 76880192 -125448155 - AluSp SINE Alu -41 272 1 1771 146 159 73 chr4 76880358 76880823 -125447524 + MLT1D LTR MaLR 1 505 0 195 42 0 0 chr4 76881129 76881153 -125447194 + (T)n Simple_repeat Simple_repeat 1 24 0 510 188 10 0 chr4 76882119 76882215 -125446132 - MER34 LTR ERV1 0 542 446 236 191 0 0 chr4 76882260 76882302 -125446045 + Alu SINE Alu 79 120 -182 1704 121 16 62 chr4 76882353 76882523 -125445824 - Tigger1 DNA MER2_type -33 2385 2234 2164 92 0 0 chr4 76882523 76882826 -125445521 + AluSc SINE Alu 9 311 0 1704 121 16 62 chr4 76882826 76882976 -125445371 - Tigger1 DNA MER2_type -184 2234 2079 * 8589 123 39 3 chr4 76882967 76884417 -125443930 - Tigger1 DNA MER2_type -699 1719 218 677 225 0 0 chr4 76884418 76884547 -125443800 + FLAM_C SINE Alu 1 129 -14 27 29 0 0 chr4 76884552 76884586 -125443761 + AT_rich Low_complexity Low_complexity 1 34 0 1257 142 27 4 chr4 76884590 76884815 -125443532 - Tigger1 DNA MER2_type -2188 230 1 231 148 111 0 chr4 76884865 76884919 -125443428 - MER82 DNA MER2_type -451 202 143 * 296 154 0 0 chr4 76884912 76884964 -125443383 + MER82 DNA MER2_type 204 255 -398 1661 204 45 56 chr4 76885410 76885856 -125442491 + LTR47B LTR ERVL 1 441 -2 1255 196 0 5 chr4 76886240 76886449 -125441898 + AluJo SINE Alu 72 279 -33 207 0 0 0 chr4 76886457 76886480 -125441867 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1947 136 3 27 chr4 76886949 76887250 -125441097 - AluSx SINE Alu -18 294 1 2283 104 0 3 chr4 76887309 76887608 -125440739 - AluSc SINE Alu -11 298 1 2014 117 0 7 chr4 76888269 76888542 -125439805 - AluSq SINE Alu -42 271 1 1545 152 105 7 chr4 76889401 76889697 -125438650 - MER1B DNA MER1_type 0 339 15 825 261 74 0 chr4 76889818 76890033 -125438314 + MIR SINE MIR 13 243 -19 1142 240 37 0 chr4 76890097 76890343 -125438004 + MIR SINE MIR 7 261 -1 653 306 120 29 chr4 76890422 76890831 -125437516 + MLT1J LTR MaLR 37 482 -29 2357 87 3 0 chr4 76891169 76891468 -125436879 + AluSx SINE Alu 1 300 -12 200 143 29 0 chr4 76891698 76891733 -125436614 + MIR SINE MIR 156 191 -71 2580 55 0 0 chr4 76891997 76892304 -125436043 + AluY SINE Alu 1 307 -4 525 161 0 43 chr4 76892702 76892795 -125435552 - FLAM_A SINE Alu -53 89 1 710 185 0 15 chr4 76892825 76892955 -125435392 + FRAM SINE Alu 44 171 -5 1623 142 27 40 chr4 76893139 76893435 -125434912 + AluJb SINE Alu 21 312 0 411 243 71 64 chr4 76893451 76893591 -125434756 + MIR SINE MIR 84 224 -38 2164 109 0 3 chr4 76893593 76893911 -125434436 + AluSx SINE Alu 1 317 0 959 170 6 12 chr4 76893961 76894126 -125434221 - AluJb SINE Alu -14 298 135 233 291 68 26 chr4 76894212 76894329 -125434018 - L2 LINE L2 -1 3312 3191 1891 96 118 11 chr4 76894573 76894844 -125433503 + AluSg SINE Alu 1 300 -10 312 272 156 29 chr4 76895093 76895266 -125433081 - MIR3 SINE MIR -7 201 7 216 0 0 0 chr4 76895743 76895767 -125432580 + (T)n Simple_repeat Simple_repeat 1 24 0 309 140 0 18 chr4 76896200 76896257 -125432090 + LTR65 LTR ERV1 608 663 -6 705 212 0 15 chr4 76896983 76897120 -125431227 + FLAM_A SINE Alu 7 141 -1 196 410 16 0 chr4 76897972 76898033 -125430314 + L2 LINE L2 3118 3179 -93 2366 83 6 3 chr4 76898130 76898435 -125429912 + AluSp SINE Alu 1 309 -4 189 0 0 0 chr4 76898435 76898456 -125429891 + (TA)n Simple_repeat Simple_repeat 1 21 0 384 77 0 0 chr4 76898521 76898573 -125429774 + (TG)n Simple_repeat Simple_repeat 1 52 0 311 248 105 9 chr4 76898893 76898998 -125429349 + MIR SINE MIR 78 192 -70 193 319 37 59 chr4 76899278 76899413 -125428934 - MIR SINE MIR -50 212 81 210 71 0 0 chr4 76901223 76901251 -125427096 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1642 172 9 35 chr4 76901578 76901897 -125426450 + AluJo SINE Alu 2 312 0 387 181 205 8 chr4 76902547 76902674 -125425673 + MLT1A2 LTR MaLR 1 152 -213 756 203 28 7 chr4 76902677 76902820 -125425527 + FRAM SINE Alu 1 146 -30 470 243 49 21 chr4 76902883 76903027 -125425320 + MLT1A2 LTR MaLR 215 362 -12 25 31 0 0 chr4 76906903 76906935 -125421412 + AT_rich Low_complexity Low_complexity 1 32 0 2163 126 13 0 chr4 76908538 76908667 -125419680 + AluSx SINE Alu 1 127 -185 2372 62 3 0 chr4 76908667 76908959 -125419388 + AluY SINE Alu 1 293 -18 2163 126 13 0 chr4 76908959 76909131 -125419216 + AluSx SINE Alu 127 306 -6 909 195 0 13 chr4 76909932 76910128 -125418219 - FRAM SINE Alu 0 176 1 2012 87 25 11 chr4 76910403 76910679 -125417668 + AluSg SINE Alu 1 280 -30 780 148 16 0 chr4 76911382 76911510 -125416837 - FAM SINE Alu -15 170 41 595 246 36 12 chr4 76912191 76912358 -125415989 - MER69A DNA AcHobo -2 175 5 1871 158 0 35 chr4 76912436 76912746 -125415601 + AluJb SINE Alu 3 301 -11 1420 153 3 110 chr4 76912750 76913050 -125415297 + AluJo SINE Alu 1 268 -44 944 264 62 31 chr4 76913204 76913722 -125414625 + L1MC4 LINE L1 7477 8010 -32 707 238 132 40 chr4 76913745 76914124 -125414223 + L1MC4 LINE L1 7625 8038 -4 266 155 5 0 chr4 76914234 76914289 -125414058 + Alu SINE Alu 6 45 -256 204 67 0 0 chr4 76914501 76914531 -125413816 + (A)n Simple_repeat Simple_repeat 1 30 0 1457 150 158 0 chr4 76914672 76914932 -125413415 + AluSp SINE Alu 3 303 0 2243 117 0 3 chr4 76915022 76915320 -125413027 - AluSx SINE Alu -15 297 1 277 173 13 53 chr4 76915571 76915646 -125412701 + MER3 DNA MER1_type 138 209 0 23 33 0 0 chr4 76915649 76915679 -125412668 + AT_rich Low_complexity Low_complexity 1 30 0 2324 115 0 0 chr4 76915806 76916110 -125412237 + AluSx SINE Alu 1 304 -8 488 155 12 0 chr4 76917530 76917614 -125410733 + AluSg/x SINE Alu 203 287 -25 761 150 15 15 chr4 76917684 76917817 -125410530 - FLAM_C SINE Alu 0 133 1 2170 105 20 3 chr4 76917825 76918119 -125410228 - AluSq SINE Alu -14 299 1 827 201 127 4 chr4 76918275 76918519 -125409828 - ORSL DNA AcHobo 0 275 2 926 221 83 4 chr4 76919481 76919831 -125408516 + L2 LINE L2 2714 3084 -229 349 306 0 0 chr4 76919851 76919949 -125408398 + L2 LINE L2 3210 3307 -6 2008 160 9 9 chr4 76920139 76920483 -125407864 + MER2 DNA MER2_type 1 344 0 21 0 0 0 chr4 76920545 76920566 -125407781 + AT_rich Low_complexity Low_complexity 1 21 0 2268 104 3 0 chr4 76921025 76921323 -125407024 - AluSq SINE Alu -14 299 1 402 241 188 9 chr4 76921509 76921621 -125406726 + L2 LINE L2 3141 3272 0 531 253 36 10 chr4 76922193 76922461 -125405886 + MLT1J2 LTR MaLR 3 319 -131 216 189 0 0 chr4 76923637 76923674 -125404673 + (TTAG)n Simple_repeat Simple_repeat 3 39 0 1152 184 0 29 chr4 76925349 76925484 -125402863 + L1MC1 LINE L1 6018 6145 -188 1988 173 16 16 chr4 76925484 76925849 -125402498 + MLT1A1 LTR MaLR 1 365 0 1152 184 0 29 chr4 76925849 76925952 -125402395 + L1MC1 LINE L1 6145 6249 -84 255 323 104 0 chr4 76927834 76927930 -125400417 + MIR SINE MIR 30 135 -73 21 0 0 0 chr4 76930155 76930176 -125398171 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chr4 76930476 76930504 -125397843 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1023 283 72 45 chr4 76930753 76931237 -125397110 + L2 LINE L2 2380 2876 -438 311 291 13 0 chr4 76931296 76931375 -125396972 + L2 LINE L2 3004 3083 -230 777 216 21 38 chr4 76931436 76931723 -125396624 + L1ME4a LINE L1 1391 1672 -4870 436 219 0 0 chr4 76931731 76931813 -125396534 + L2 LINE L2 3231 3312 -1 447 288 14 48 chr4 76931820 76931966 -125396381 - MIR SINE MIR -115 147 7 252 331 62 31 chr4 76932123 76932253 -125396094 + MIR SINE MIR 1 134 -128 229 361 41 8 chr4 76932472 76932594 -125395753 + MIR SINE MIR 136 261 -1 6389 203 122 15 chr4 76933590 76935113 -125393234 + MER52A LTR ERV1 58 1743 -12 442 299 76 15 chr4 76935247 76935444 -125392903 - L3 LINE CR1 -72 1505 1297 439 325 30 15 chr4 76935857 76936057 -125392290 + L1ME4a LINE L1 3837 4039 -2605 255 186 192 57 chr4 76936225 76936402 -125391945 + L1ME4a LINE L1 4287 4487 -2157 2024 145 0 13 chr4 76936840 76937144 -125391203 - AluSq SINE Alu -13 300 1 783 263 102 53 chr4 76937323 76937835 -125390512 + L2 LINE L2 2767 3307 -6 383 314 93 25 chr4 76937856 76938136 -125390211 + L1ME4a LINE L1 5128 5426 -1218 2252 81 0 7 chr4 76938167 76938501 -125389846 - AluY SINE Alu 0 332 1 568 242 50 18 chr4 76938998 76939217 -125389130 + L1ME4a LINE L1 6121 6346 -273 244 197 66 33 chr4 76939763 76939824 -125388523 + L2 LINE L2 3250 3312 -1 2201 96 0 10 chr4 76942622 76942915 -125385432 - AluSq SINE Alu -23 290 1 258 32 0 0 chr4 76943779 76943810 -125384537 + (A)n Simple_repeat Simple_repeat 1 31 0 2060 135 10 3 chr4 76944266 76944570 -125383777 + AluSx SINE Alu 1 306 -6 201 309 12 48 chr4 76944957 76945041 -125383306 + MIR SINE MIR 21 101 -107 472 317 82 29 chr4 76945260 76945468 -125382879 + MIR SINE MIR 33 251 -11 22 0 0 0 chr4 76945483 76945505 -125382842 + AT_rich Low_complexity Low_complexity 1 22 0 469 143 0 0 chr4 76945814 76945884 -125382463 - AluJ/FLAM SINE Alu -242 70 1 388 273 100 89 chr4 76946382 76946811 -125381536 + HAL1 LINE L1 838 1271 -1236 2112 40 2 3 chr4 76948903 76950144 -125378203 + L1PA5 LINE L1 4803 6151 -3 237 211 0 0 chr4 76950647 76950704 -125377643 + A-rich Low_complexity Low_complexity 1 57 0 1193 214 11 4 chr4 76950755 76951021 -125377326 + MER34 LTR ERV1 11 278 -264 9515 150 20 9 chr4 76951025 76952713 -125375634 + Tigger1 DNA MER2_type 1 1706 -712 1040 122 5 51 chr4 76952726 76952923 -125375424 + Tigger1 DNA MER2_type 2078 2265 -153 571 133 0 0 chr4 76953044 76953127 -125375220 - AluS SINE Alu -230 83 1 790 183 41 6 chr4 76953127 76953296 -125375051 + Tigger1 DNA MER2_type 2243 2417 -1 797 250 75 5 chr4 76953305 76953517 -125374830 + MER34 LTR ERV1 316 542 0 183 129 0 0 chr4 76954194 76954225 -125374122 + (A)n Simple_repeat Simple_repeat 1 31 0 1388 209 47 8 chr4 76954542 76954659 -125373688 + AluJo SINE Alu 1 112 -200 356 0 23 0 chr4 76954659 76954703 -125373644 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 1388 209 47 8 chr4 76954703 76954843 -125373504 + AluJo SINE Alu 112 268 -44 2354 118 127 10 chr4 76955170 76955587 -125372760 + Tigger1 DNA MER2_type 1951 2416 -2 412 243 129 21 chr4 76955623 76955763 -125372584 - MER82 DNA MER2_type -498 155 1 1210 179 0 0 chr4 76955788 76955992 -125372355 + Tigger3(Golem) DNA MER2_type 1 204 -2825 1422 161 0 4 chr4 76955992 76956235 -125372112 - Tigger3(Golem) DNA MER2_type 0 3029 2788 1801 161 7 20 chr4 76956235 76956539 -125371808 + AluJb SINE Alu 1 300 -12 237 32 0 0 chr4 76956539 76956570 -125371777 + Tigger3(Golem) DNA MER2_type 255 285 -2744 419 152 0 111 chr4 76956570 76956669 -125371678 - AluJ/FLAM SINE Alu -224 88 1 1001 222 16 66 chr4 76956669 76957034 -125371313 - MLT1C LTR MaLR -115 352 6 22 0 0 0 chr4 76957369 76957391 -125370956 + AT_rich Low_complexity Low_complexity 1 22 0 583 309 38 24 chr4 76957653 76957863 -125370484 + LTR28 LTR ERV1 12 224 -796 540 230 33 44 chr4 76957977 76958221 -125370126 + MER61D LTR ERV1 334 486 -15 196 351 167 14 chr4 76958384 76958666 -125369681 + L2 LINE L2 1071 1395 -1919 216 67 0 0 chr4 76959112 76959142 -125369205 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 341 154 0 0 chr4 76959696 76959748 -125368599 - AluSp SINE Alu -115 188 137 245 176 55 11 chr4 76960040 76960131 -125368216 + (TA)n Simple_repeat Simple_repeat 1 95 0 45 34 0 0 chr4 76960381 76960440 -125367907 + AT_rich Low_complexity Low_complexity 1 59 0 255 214 18 0 chr4 76960441 76960497 -125367850 + (CCA)n Simple_repeat Simple_repeat 1 57 0 2257 118 3 0 chr4 76960528 76960832 -125367515 - AluSp SINE Alu -8 305 1 591 193 0 9 chr4 76961069 76961183 -125367164 - L1M2 LINE L1 -6641 208 96 308 219 73 49 chr4 77011305 77011387 -125316960 + L1MC4a LINE L1 5506 5589 -532 4295 33 0 0 chr4 77011391 77011900 -125316447 - L1PA5 LINE L1 0 6154 5646 356 353 96 0 chr4 77011906 77012093 -125316254 + L1MC4a LINE L1 5729 5933 -1875 29 28 0 0 chr4 77013052 77013088 -125315259 + AT_rich Low_complexity Low_complexity 1 36 0 2208 96 3 0 chr4 77013234 77013525 -125314822 + AluSx SINE Alu 1 292 -20 1148 110 0 6 chr4 77013818 77013982 -125314365 + AluSg/x SINE Alu 147 309 -3 2261 99 3 3 chr4 77013994 77014298 -125314049 + AluSg SINE Alu 1 304 -6 252 250 62 38 chr4 77014393 77014416 -125313931 - L2 LINE L2 -1 3271 3250 2291 91 0 0 chr4 77014416 77014714 -125313633 + AluY SINE Alu 4 301 -10 252 250 62 38 chr4 77014714 77014770 -125313577 - L2 LINE L2 -22 3250 3190 2308 94 0 25 chr4 77014795 77015115 -125313232 - AluSx SINE Alu 0 312 1 864 215 81 45 chr4 77015816 77016062 -125312285 + MIR SINE MIR 3 257 -5 23 33 0 0 chr4 77016092 77016122 -125312225 + AT_rich Low_complexity Low_complexity 1 30 0 1854 106 53 18 chr4 77016433 77016717 -125311630 - AluSx SINE Alu -18 294 1 7177 48 2 3 chr4 77017736 77018813 -125309534 + L1PA5 LINE L1 5079 6154 0 308 219 73 49 chr4 77018817 77018899 -125309448 - L1ME LINE L1 -532 5589 5506 361 302 69 26 chr4 77019929 77020045 -125308302 - L2 LINE L2 -2 3270 3150 2746 206 46 21 chr4 77021078 77021642 -125306705 + MER21B LTR ERV1 1 578 -285 2101 130 3 0 chr4 77022246 77022539 -125305808 - AluSx SINE Alu -18 294 1 234 189 108 0 chr4 77022815 77022889 -125305458 - HAL1b LINE L1 -521 827 746 505 263 136 63 chr4 77023252 77024009 -125304338 - HAL1 LINE L1 -885 1622 811 895 117 0 29 chr4 77025383 77025520 -125302827 - FLAM_C SINE Alu 0 133 1 1434 201 29 0 chr4 77025686 77025965 -125302382 - AluJo SINE Alu -25 287 1 185 330 117 29 chr4 77026345 77026448 -125301899 - MIR SINE MIR -131 131 20 717 277 80 42 chr4 77028309 77028547 -125299800 + MIR SINE MIR 2 248 -14 399 251 121 51 chr4 77028793 77029148 -125299199 + L1ME4a LINE L1 5610 5989 -132 1710 168 7 10 chr4 77029858 77030149 -125298198 + AluJo SINE Alu 1 290 -22 2203 101 7 10 chr4 77030320 77030627 -125297720 - AluSx SINE Alu -6 306 1 771 149 95 7 chr4 77030849 77030997 -125297350 + L1MB2 LINE L1 5715 5875 -296 511 313 112 15 chr4 77031298 77032033 -125296314 + L1M4 LINE L1 3742 4547 -1599 2105 95 3 7 chr4 77034750 77035033 -125293314 - AluSc SINE Alu -19 290 9 2053 126 7 0 chr4 77035159 77035460 -125292887 - AluSx SINE Alu -9 303 1 204 135 0 0 chr4 77035813 77035850 -125292497 + (CA)n Simple_repeat Simple_repeat 1 37 0 1471 166 81 10 chr4 77035864 77036159 -125292188 - MER46B DNA MER2_type -1 235 45 826 145 8 0 chr4 77036172 77036296 -125292051 + AluJo SINE Alu 12 136 -176 464 95 0 0 chr4 77036301 77036364 -125291983 - MER46B DNA MER2_type -298 63 1 232 306 0 72 chr4 77037091 77037202 -125291145 - MIR SINE MIR -5 257 155 * 252 333 11 11 chr4 77037198 77037288 -125291059 + MIR SINE MIR 155 244 -18 4295 189 82 90 chr4 77037379 77037737 -125290610 - Charlie1a DNA MER1_type -1306 1455 1096 888 209 6 0 chr4 77037737 77037900 -125290447 - FAM SINE Alu -8 167 4 4295 189 82 90 chr4 77037900 77038265 -125290082 - Charlie1a DNA MER1_type -1665 1096 730 2314 92 0 0 chr4 77038265 77038557 -125289790 + AluSc SINE Alu 1 292 -17 4295 189 82 90 chr4 77038557 77038960 -125289387 - Charlie1a DNA MER1_type -2031 730 340 672 184 0 57 chr4 77038960 77039101 -125289246 - FLAM_C SINE Alu 0 133 1 4295 189 82 90 chr4 77039101 77039439 -125288908 - Charlie1a DNA MER1_type -2421 340 1 25 0 0 0 chr4 77039534 77039559 -125288788 + AT_rich Low_complexity Low_complexity 1 25 0 2019 121 0 35 chr4 77040771 77041084 -125287263 - AluSx SINE Alu -4 308 7 2462 89 0 0 chr4 77041955 77042259 -125286088 - AluSq SINE Alu -9 304 1 5436 245 93 23 chr4 77043376 77044576 -125283771 - L1MEc LINE L1 -1641 4574 3459 210 118 0 0 chr4 77044576 77044610 -125283737 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1933 128 25 4 chr4 77044613 77044894 -125283453 - AluSx SINE Alu -25 287 1 5436 245 93 23 chr4 77044894 77045158 -125283189 - L1MEc LINE L1 -2757 3458 3214 642 222 57 26 chr4 77045158 77045352 -125282995 + MER105 DNA DNA 3 202 -2 5436 245 93 23 chr4 77045352 77045611 -125282736 - L1MEc LINE L1 -3001 3214 2974 2502 52 0 3 chr4 77045611 77045917 -125282430 - AluY SINE Alu -6 305 1 5436 245 93 23 chr4 77045917 77046507 -125281840 - L1MEc LINE L1 -3241 2974 2131 2541 119 16 61 chr4 77046539 77046700 -125281647 - L1MA8 LINE L1 -1 6290 6123 1999 135 3 3 chr4 77046700 77046997 -125281350 + AluSq SINE Alu 1 297 -16 2541 119 16 61 chr4 77046997 77047329 -125281018 - L1MA8 LINE L1 -168 6123 5819 459 177 0 0 chr4 77047330 77047426 -125280921 + CT-rich Low_complexity Low_complexity 1 96 0 3222 162 36 47 chr4 77047426 77048499 -125279848 - L1MA8 LINE L1 -490 5801 4749 1499 168 31 45 chr4 77048499 77048790 -125279557 - AluJo SINE Alu -23 289 3 3222 162 36 47 chr4 77048790 77048879 -125279468 - L1MA8 LINE L1 -1542 4749 4660 539 248 74 31 chr4 77048909 77049167 -125279180 - L1MEc LINE L1 -4252 2144 1876 15005 67 231 0 chr4 77049410 77051699 -125276648 + L1P LINE L1 1350 4166 -1980 430 282 134 0 chr4 77051952 77052101 -125276246 + L3 LINE CR1 1192 1360 -217 224 328 7 0 chr4 77052223 77052301 -125276046 + CT-rich Low_complexity Low_complexity 1 78 0 807 194 130 121 chr4 77052301 77052961 -125275386 - L1MC5 LINE L1 -36 7925 7260 606 176 99 21 chr4 77053031 77053173 -125275174 - HAL1 LINE L1 -806 1701 1549 374 265 10 10 chr4 77053311 77053413 -125274934 - HAL1 LINE L1 -1624 883 782 1223 264 75 36 chr4 77053441 77053907 -125274440 - MLT1E3 LTR MaLR 0 624 141 302 261 85 6 chr4 77054097 77054262 -125274085 - AluSg/x SINE Alu -5 295 118 2096 133 22 11 chr4 77054264 77054624 -125273723 + MER4B-int LTR ERV1 6395 6758 0 2857 124 26 25 chr4 77054624 77054714 -125273633 + MER4B LTR ERV1 1 89 -690 2272 97 3 0 chr4 77054714 77055012 -125273335 + AluSp SINE Alu 1 299 -14 2857 124 26 25 chr4 77055012 77055503 -125272844 + MER4B LTR ERV1 89 749 -30 2614 191 28 3 chr4 77055505 77056086 -125272261 + L1 LINE L1 2580 3174 -2972 26 64 0 0 chr4 77057527 77057574 -125270773 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr4 77057798 77057820 -125270527 + AT_rich Low_complexity Low_complexity 1 22 0 361 284 109 21 chr4 77058187 77058426 -125269921 + L1ME4a LINE L1 5566 5825 -296 25 0 0 0 chr4 77058588 77058613 -125269734 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr4 77059634 77059659 -125268688 + AT_rich Low_complexity Low_complexity 1 25 0 2086 92 4 7 chr4 77060464 77060779 -125267568 + AluSg SINE Alu 1 314 0 1632 152 47 7 chr4 77061209 77061505 -125266842 + AluSx SINE Alu 1 308 -4 1224 102 0 6 chr4 77061574 77061779 -125266568 - AluSg/x SINE Alu 0 322 119 732 164 8 15 chr4 77061876 77062010 -125266337 + FLAM_C SINE Alu 1 133 -10 340 289 43 19 chr4 77063930 77064069 -125264278 + MIR SINE MIR 2 144 -64 342 238 62 0 chr4 77064210 77064290 -125264057 + L2 LINE L2 3187 3271 -1 235 204 41 0 chr4 77064296 77064345 -125264002 + MIR SINE MIR 149 199 -63 690 230 73 37 chr4 77064353 77064544 -125263803 - MIR SINE MIR -62 200 3 2216 117 0 7 chr4 77065374 77065683 -125262664 + AluSq SINE Alu 2 308 -5 2434 74 0 7 chr4 77066618 77066915 -125261432 - AluSq SINE Alu -18 295 1 197 333 167 36 chr4 77067405 77067573 -125260774 + MIR3 SINE MIR 19 208 0 282 206 0 0 chr4 77069228 77069296 -125259051 + (CCG)n Simple_repeat Simple_repeat 3 70 0 328 293 0 8 chr4 77069427 77069550 -125258797 + (CCG)n Simple_repeat Simple_repeat 2 123 0 246 179 0 0 chr4 77069652 77069708 -125258639 + (CCG)n Simple_repeat Simple_repeat 3 58 0 275 67 44 0 chr4 77069760 77069805 -125258542 + GA-rich Low_complexity Low_complexity 1 47 0 188 283 33 0 chr4 77070429 77070489 -125257858 + MIR3 SINE MIR 112 173 -35 948 99 0 0 chr4 77071612 77071733 -125256614 + AluSg/x SINE Alu 169 289 -21 777 252 123 65 chr4 77072006 77072111 -125256236 + MLT1J1 LTR MaLR 3 100 -350 2273 86 7 0 chr4 77072111 77072402 -125255945 - AluSp SINE Alu -20 293 1 777 252 123 65 chr4 77072402 77072606 -125255741 + MLT1J1 LTR MaLR 100 330 -120 652 231 86 56 chr4 77073978 77074247 -125254100 + MLT1J2 LTR MaLR 45 321 -129 466 331 69 27 chr4 77074456 77074716 -125253631 + MLT1K LTR MaLR 141 411 -177 192 392 83 0 chr4 77075394 77075514 -125252833 + L2 LINE L2 2563 2692 -622 389 242 78 20 chr4 77075538 77075691 -125252656 - L1ME4a LINE L1 -1 6120 5959 31 0 0 0 chr4 77075728 77075759 -125252588 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 77075852 77075875 -125252472 + AT_rich Low_complexity Low_complexity 1 23 0 575 332 192 11 chr4 77076169 77076584 -125251763 - L2 LINE L2 -5 3267 2777 301 264 38 19 chr4 77076604 77076710 -125251637 - L3 LINE CR1 -340 1237 1130 1850 140 85 3 chr4 77077751 77078093 -125250254 + L1MCa LINE L1 28 397 -6029 226 283 0 0 chr4 77078271 77078324 -125250023 + MER94 DNA DNA 6 58 -76 1913 150 4 0 chr4 77078432 77078712 -125249635 + AluSx SINE Alu 5 285 -27 201 39 0 0 chr4 77078712 77078738 -125249609 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 28 29 0 0 chr4 77078919 77078954 -125249393 + AT_rich Low_complexity Low_complexity 1 35 0 1278 155 58 60 chr4 77079015 77079288 -125249059 + MER114 LTR ERV 19 291 -357 213 39 0 0 chr4 77079288 77079314 -125249033 + (TATG)n Simple_repeat Simple_repeat 2 27 0 1995 144 0 0 chr4 77079314 77079598 -125248749 - AluSx SINE Alu -28 284 1 1278 155 58 60 chr4 77079598 77079723 -125248624 + MER114 LTR ERV 289 417 -231 1846 208 63 5 chr4 77079725 77080168 -125248179 - MLT1D LTR MaLR -1 504 36 2273 35 42 10 chr4 77080179 77080468 -125247879 + AluY SINE Alu 1 298 -13 389 207 0 0 chr4 77080533 77080615 -125247732 + L1M LINE L1 5315 5396 -770 3125 229 54 23 chr4 77080617 77081187 -125247160 - L1MEc LINE L1 -1807 4408 3797 2124 61 7 11 chr4 77081187 77081464 -125246883 - AluY SINE Alu 0 311 36 3125 229 54 23 chr4 77081464 77081815 -125246532 - L1MEc LINE L1 -2418 3797 3458 915 197 140 115 chr4 77081820 77082413 -125245934 - L1MEc LINE L1 -3899 2497 1890 1723 138 3 31 chr4 77082413 77082704 -125245643 - MER1B DNA MER1_type 0 339 57 1079 251 31 78 chr4 77082721 77083211 -125245136 - L1MEc LINE L1 -4499 1897 1431 1681 261 56 47 chr4 77083221 77083276 -125245071 - L1MEc LINE L1 -5716 680 627 2084 139 3 7 chr4 77083276 77083577 -125244770 - AluSx SINE Alu -12 300 1 1681 261 56 47 chr4 77083577 77084160 -125244187 - L1MEc LINE L1 -5769 627 36 369 335 140 0 chr4 77084180 77084380 -125243967 + L2 LINE L2 2702 2929 -385 2310 60 0 4 chr4 77084479 77084799 -125243548 - AluY SINE Alu 0 319 1 262 311 0 0 chr4 77084829 77084890 -125243457 + L2 LINE L2 2998 3058 -214 243 0 0 0 chr4 77086159 77086186 -125242161 + (A)n Simple_repeat Simple_repeat 1 27 0 419 301 30 45 chr4 77086699 77086832 -125241515 - L2 LINE L2 -1 3271 3141 21 82 0 0 chr4 77086849 77086898 -125241449 + AT_rich Low_complexity Low_complexity 1 49 0 187 333 42 0 chr4 77087014 77087086 -125241261 - L2 LINE L2 -230 3042 2968 1461 54 22 0 chr4 77087258 77087442 -125240905 - AluY SINE Alu -6 305 118 2305 79 0 41 chr4 77087445 77087763 -125240584 - AluY SINE Alu -6 305 1 1020 71 0 50 chr4 77087763 77087903 -125240444 - AluSc SINE Alu -176 133 1 10865 190 17 18 chr4 77087924 77088677 -125239670 - L1PA16 LINE L1 -3 6814 6062 1952 150 0 7 chr4 77088677 77088964 -125239383 - AluSx SINE Alu -27 285 1 10865 190 17 18 chr4 77088964 77091072 -125237275 - L1PA16 LINE L1 -755 6062 3947 2201 119 6 10 chr4 77091072 77091383 -125236964 - AluSx SINE Alu 0 312 3 10865 190 17 18 chr4 77091383 77092194 -125236153 - L1PA16 LINE L1 -2870 3947 3137 402 266 79 7 chr4 77092691 77092830 -125235517 - L1PA16 LINE L1 -5276 1511 1363 * 919 333 41 48 chr4 77092800 77093452 -125234895 - L1PA16 LINE L1 -6138 649 2 747 327 65 4 chr4 77093464 77093742 -125234605 - L2 LINE L2 -530 2784 2490 393 287 10 0 chr4 77093753 77093854 -125234493 + L2 LINE L2 1334 1435 -1879 395 344 107 34 chr4 77093878 77094204 -125234143 - L2 LINE L2 -2907 407 58 1925 119 0 8 chr4 77094983 77095243 -125233104 + AluSx SINE Alu 31 288 -24 998 286 106 16 chr4 77096009 77096387 -125231960 - MLT2E LTR ERVL -2 626 215 566 231 249 0 chr4 77097119 77097344 -125231003 + LTR16A LTR ERVL 170 450 0 6646 188 22 48 chr4 77097533 77098371 -125229976 + L1M3f LINE L1 10 868 -5460 2344 95 3 0 chr4 77098371 77098675 -125229672 + AluSg SINE Alu 1 305 -5 6646 188 22 48 chr4 77098675 77100210 -125228137 + L1M3f LINE L1 868 2309 -4019 5433 79 11 1 chr4 77100221 77100965 -125227382 - L1PA7 LINE L1 -8 6146 5396 505 42 0 0 chr4 77100963 77101035 -125227312 - L1P LINE L1 -2981 3165 3094 * 333 0 0 0 chr4 77101850 77101887 -125226460 + (TG)n Simple_repeat Simple_repeat 2 38 0 230 304 0 13 chr4 77101891 77101970 -125226377 + GA-rich Low_complexity Low_complexity 4 81 0 720 297 108 36 chr4 77102119 77102479 -125225868 + L2 LINE L2 2924 3309 -4 242 162 0 0 chr4 77102893 77102930 -125225417 + MER5B DNA MER1_type 1 37 -141 504 268 8 16 chr4 77102953 77103080 -125225267 + FLAM_A SINE Alu 9 134 -8 538 226 17 0 chr4 77103084 77103199 -125225148 - MER5B DNA MER1_type -61 117 1 400 268 62 16 chr4 77104381 77104575 -125223772 + L1MEc LINE L1 659 861 -5535 227 279 13 44 chr4 77104789 77104947 -125223400 + A-rich Low_complexity Low_complexity 3 155 0 236 253 11 0 chr4 77105068 77105155 -125223192 - L1M4 LINE L1 -1730 4416 4329 1375 231 34 46 chr4 77105193 77105670 -125222677 - L1M4 LINE L1 -2164 3982 3510 2131 106 7 3 chr4 77105670 77105962 -125222385 - AluSc SINE Alu -16 293 1 1375 231 34 46 chr4 77105962 77106007 -125222340 - L1M4 LINE L1 -2636 3510 3466 345 252 164 12 chr4 77106061 77106156 -125222191 - L1M4 LINE L1 -2846 3300 3221 2029 128 30 0 chr4 77106156 77106453 -125221894 - AluSx SINE Alu -6 306 1 345 252 164 12 chr4 77106453 77106607 -125221740 - L1M4 LINE L1 -2925 3221 3013 276 294 0 12 chr4 77106646 77106731 -125221616 + (TA)n Simple_repeat Simple_repeat 2 85 0 193 175 0 25 chr4 77106839 77106879 -125221468 - L2 LINE L2 -2 3311 3273 297 304 33 0 chr4 77106940 77107032 -125221315 - L2 LINE L2 -518 2796 2702 27 81 0 0 chr4 77107259 77107321 -125221026 + AT_rich Low_complexity Low_complexity 1 62 0 37 0 0 0 chr4 77107727 77107764 -125220583 + AT_rich Low_complexity Low_complexity 1 37 0 539 208 100 0 chr4 77108932 77109052 -125219295 + MER96 DNA MER1_type? 1 132 -43 25 51 0 0 chr4 77109569 77109608 -125218739 + AT_rich Low_complexity Low_complexity 1 39 0 419 301 30 45 chr4 77111407 77111540 -125216807 - L2 LINE L2 -1 3271 3141 21 82 0 0 chr4 77111557 77111606 -125216741 + AT_rich Low_complexity Low_complexity 1 49 0 187 333 42 0 chr4 77111719 77111791 -125216556 - L2 LINE L2 -230 3042 2968 1461 54 22 0 chr4 77111963 77112147 -125216200 - AluY SINE Alu -6 305 118 2221 85 3 41 chr4 77112150 77112467 -125215880 - AluY SINE Alu -6 305 1 872 101 7 50 chr4 77112467 77112606 -125215741 - AluSc SINE Alu -176 133 1 1072 203 54 0 chr4 77112633 77112948 -125215399 - L1PA16 LINE L1 -9 6157 5826 805 209 0 13 chr4 77113172 77113325 -125215022 - FAM SINE Alu -10 175 25 27 0 0 0 chr4 77113376 77113403 -125214944 + AT_rich Low_complexity Low_complexity 1 27 0 1971 153 3 3 chr4 77114009 77114316 -125214031 - AluSx SINE Alu -5 307 1 9301 163 46 24 chr4 77117483 77117639 -125210708 - MER21-int LTR ERV1 -522 3669 3518 4249 90 106 2 chr4 77117639 77118262 -125210085 + LTR12 LTR ERV1 1 688 0 9301 163 46 24 chr4 77118262 77119993 -125208354 - MER21-int LTR ERV1 -673 3518 1742 2254 210 48 39 chr4 77119987 77120572 -125207775 - MER21-int LTR ERV1 -2500 1691 1102 * 236 258 55 16 chr4 77120701 77120829 -125207518 + MER52A LTR ERV1 1622 1754 -1 3005 158 37 40 chr4 77120829 77121481 -125206866 + L1MA4 LINE L1 5646 6295 -5 2273 119 3 0 chr4 77121588 77122000 -125206347 - AluSx SINE Alu 0 413 1 190 404 0 10 chr4 77122012 77122111 -125206236 + L2 LINE L2 2698 2795 -519 2005 128 3 3 chr4 77122673 77122955 -125205392 - AluSg SINE Alu -28 282 1 421 195 26 0 chr4 77123309 77123386 -125204961 + Charlie3 DNA MER1_type 2634 2712 0 2283 126 56 0 chr4 77123486 77123843 -125204504 - MER51B LTR ERV1 0 377 1 335 318 184 8 chr4 77123939 77124178 -125204169 - HAL1 LINE L1 -746 1761 1481 6623 98 61 6 chr4 77124343 77125379 -125202968 + MER4B-int LTR ERV1 5217 6309 -449 1851 139 7 0 chr4 77125453 77125734 -125202613 - AluSx SINE Alu -29 283 1 204 135 0 0 chr4 77126087 77126124 -125202223 + (CA)n Simple_repeat Simple_repeat 1 37 0 1451 169 81 10 chr4 77126138 77126433 -125201914 - MER46B DNA MER2_type -1 235 45 196 29 0 57 chr4 77126620 77126655 -125201692 + (CCCCCA)n Simple_repeat Simple_repeat 2 34 0 30 27 0 0 chr4 77126829 77126866 -125201481 + AT_rich Low_complexity Low_complexity 1 37 0 571 256 28 34 chr4 77127315 77127491 -125200856 + L2 LINE L2 2549 2723 -591 2154 114 3 10 chr4 77127492 77127886 -125200461 + AluY SINE Alu 2 393 0 1018 268 22 20 chr4 77127886 77128251 -125200096 + L2 LINE L2 2703 3069 -244 859 147 15 0 chr4 77128266 77128402 -125199945 + MSTC LTR MaLR 1 138 -290 702 183 43 57 chr4 77128530 77128831 -125199516 + AluYa5 SINE Alu 1 297 -4 789 232 16 11 chr4 77130007 77130197 -125198150 - AluJo SINE Alu -1 311 121 1994 107 107 114 chr4 77130215 77130645 -125197702 + MSTA LTR MaLR 1 427 -1 219 244 0 0 chr4 77131390 77131435 -125196912 + (ATG)n Simple_repeat Simple_repeat 2 46 0 209 264 56 28 chr4 77131435 77131507 -125196840 - MIR SINE MIR -4 258 185 2175 240 148 106 chr4 77131639 77132311 -125196036 - L2 LINE L2 -8 3305 2662 638 188 26 8 chr4 77132311 77132428 -125195919 - AluJb SINE Alu -26 286 168 2175 240 148 106 chr4 77132428 77133297 -125195050 - L2 LINE L2 -651 2662 1540 1231 139 63 8 chr4 77133315 77133567 -125194780 + AluSx SINE Alu 1 266 -46 511 217 39 0 chr4 77133674 77133803 -125194544 - L1ME LINE L1 -672 5492 5359 232 270 202 0 chr4 77133817 77133906 -125194441 - MIR SINE MIR -72 190 84 249 299 276 0 chr4 77135017 77135234 -125193113 + L3 LINE CR1 891 1167 -410 1335 241 142 25 chr4 77135367 77135758 -125192589 + L1ME1 LINE L1 4908 5252 -914 1668 179 7 7 chr4 77135758 77136059 -125192288 - AluJb SINE Alu -11 301 1 1335 241 142 25 chr4 77136059 77136768 -125191579 + L1ME1 LINE L1 5252 6161 -5 215 234 0 0 chr4 77136778 77136825 -125191522 + A-rich Low_complexity Low_complexity 2 48 0 225 0 0 0 chr4 77137341 77137366 -125190981 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 407 295 121 14 chr4 77137425 77137632 -125190715 - L2 LINE L2 0 3313 3085 252 250 62 38 chr4 77137836 77137892 -125190455 + L2 LINE L2 3190 3250 -22 2072 98 10 0 chr4 77137892 77138187 -125190160 - AluY SINE Alu -10 301 4 252 250 62 38 chr4 77138187 77138210 -125190137 + L2 LINE L2 3250 3271 -1 2243 99 3 3 chr4 77138306 77138608 -125189739 - AluSg SINE Alu -8 302 1 1113 109 0 12 chr4 77138620 77138785 -125189562 - AluSg/x SINE Alu -3 309 147 1982 136 0 7 chr4 77139080 77139374 -125188973 - AluSx SINE Alu -20 292 1 23 54 0 0 chr4 77140906 77140943 -125187404 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr4 77141583 77141607 -125186740 + AT_rich Low_complexity Low_complexity 1 24 0 56 0 0 0 chr4 77141658 77141714 -125186633 + AT_rich Low_complexity Low_complexity 1 56 0 321 206 0 82 chr4 77141934 77142128 -125186219 + A-rich Low_complexity Low_complexity 3 180 0 21 71 0 0 chr4 77142631 77142673 -125185674 + AT_rich Low_complexity Low_complexity 1 42 0 223 309 0 15 chr4 77142842 77142910 -125185437 + L2 LINE L2 2827 2893 -421 433 224 24 0 chr4 77143063 77143148 -125185199 + L2 LINE L2 3227 3313 0 260 267 0 0 chr4 77143295 77143355 -125184992 - L1MC/D LINE L1 -2068 5740 5681 2667 132 140 10 chr4 77143417 77143903 -125184444 + MER44D DNA MER2_type 2 605 0 1037 131 17 6 chr4 77144182 77144357 -125183990 - AluY SINE Alu -1 310 134 492 163 49 49 chr4 77144373 77144496 -125183851 + MER3 DNA MER1_type 69 191 -18 373 272 107 0 chr4 77144625 77144728 -125183619 + MER81 DNA DNA 1 114 0 825 160 80 46 chr4 77144728 77144965 -125183382 + MER3 DNA MER1_type 2341 2585 0 309 284 77 38 chr4 77145568 77145751 -125182596 - MIR SINE MIR -62 200 11 279 268 0 49 chr4 77146025 77146107 -125182240 - L2 LINE L2 -8 3264 3187 23 33 0 0 chr4 77146711 77146741 -125181606 + AT_rich Low_complexity Low_complexity 1 30 0 1585 166 36 7 chr4 77146918 77147218 -125181129 + AluJo SINE Alu 2 312 0 679 140 18 0 chr4 77147235 77147349 -125180998 - AluY SINE Alu -9 302 187 594 217 30 60 chr4 77147776 77148011 -125180336 - L1MC5 LINE L1 -27 7934 7707 753 176 0 37 chr4 77148266 77148402 -125179945 - FLAM_C SINE Alu -12 131 1 1763 190 0 0 chr4 77148718 77149013 -125179334 - AluJo SINE Alu -17 295 1 204 309 64 64 chr4 77149296 77149406 -125178941 - MIR SINE MIR -55 153 44 335 244 49 15 chr4 77149506 77149613 -125178734 - MER20 DNA MER1_type -40 179 84 21 57 0 0 chr4 77149935 77149970 -125178377 + AT_rich Low_complexity Low_complexity 1 35 0 267 62 0 0 chr4 77149999 77150031 -125178316 - U6 snRNA snRNA -75 32 1 189 107 0 0 chr4 77151375 77151403 -125176944 + (ATG)n Simple_repeat Simple_repeat 2 29 0 180 0 0 0 chr4 77151469 77151489 -125176858 + (TTA)n Simple_repeat Simple_repeat 1 20 0 235 160 200 0 chr4 77151492 77151542 -125176805 - MIR SINE MIR -119 143 84 505 246 256 20 chr4 77151574 77151769 -125176578 - MIR SINE MIR -4 258 18 1688 161 11 0 chr4 77153210 77153477 -125174870 + AluJo SINE Alu 1 270 -42 439 249 66 72 chr4 77153719 77153900 -125174447 - HAL1 LINE L1 -1882 625 446 203 211 0 28 chr4 77154249 77154320 -125174027 + (TAA)n Simple_repeat Simple_repeat 3 71 0 1869 122 51 7 chr4 77154404 77154700 -125173647 - AluSx SINE Alu -3 309 1 437 259 194 7 chr4 77155741 77155880 -125172467 - MER5A DNA MER1_type -14 175 11 380 331 16 71 chr4 77155923 77156061 -125172286 + MER5B DNA MER1_type 5 132 -46 1561 181 16 23 chr4 77156061 77156371 -125171976 + AluJb SINE Alu 5 312 0 380 331 16 71 chr4 77156371 77156416 -125171931 + MER5B DNA MER1_type 132 178 0 1352 202 3 70 chr4 77156720 77156874 -125171473 + AluJo SINE Alu 1 125 -187 1680 177 13 3 chr4 77156874 77157173 -125171174 + AluJo SINE Alu 9 310 -2 1352 202 3 70 chr4 77157173 77157330 -125171017 + AluJo SINE Alu 125 291 -21 446 282 22 39 chr4 77157385 77157566 -125170781 - MLT1K LTR MaLR -107 481 304 1979 110 10 0 chr4 77158075 77158365 -125169982 + L1MA2 LINE L1 5437 5729 -576 2164 96 36 9 chr4 77158365 77158695 -125169652 + L1MA2 LINE L1 5962 6304 0 1210 243 49 0 chr4 77158708 77158975 -125169372 + MER82 DNA MER2_type 374 653 0 2963 192 59 27 chr4 77159822 77160529 -125167818 - Charlie1a DNA MER1_type -699 756 27 22 35 0 0 chr4 77161111 77161140 -125167207 + AT_rich Low_complexity Low_complexity 1 29 0 251 203 34 0 chr4 77161216 77161275 -125167072 + (TA)n Simple_repeat Simple_repeat 2 62 0 303 173 0 0 chr4 77161281 77161333 -125167014 + L1MC4 LINE L1 6652 6703 -1339 244 73 0 109 chr4 77161346 77161401 -125166946 - Alu SINE Alu 0 133 85 960 162 152 0 chr4 77161401 77161592 -125166755 - AluJo SINE Alu -92 220 1 25 51 0 0 chr4 77161808 77161847 -125166500 + AT_rich Low_complexity Low_complexity 1 39 0 233 355 64 18 chr4 77162744 77162854 -125165493 + L2 LINE L2 3199 3313 0 2448 82 0 13 chr4 77163593 77163909 -125164438 + AluSx SINE Alu 1 312 0 32 26 0 0 chr4 77165095 77165134 -125163213 + AT_rich Low_complexity Low_complexity 1 39 0 2305 70 3 20 chr4 77166322 77166624 -125161723 - AluY SINE Alu -14 297 1 636 91 20 10 chr4 77167692 77167791 -125160556 + AluY SINE Alu 184 283 -28 2140 91 4 0 chr4 77168142 77168416 -125159931 + AluSc SINE Alu 1 275 -34 21 0 0 0 chr4 77168752 77168773 -125159574 + AT_rich Low_complexity Low_complexity 1 21 0 615 202 173 65 chr4 77168936 77169288 -125159059 + HAL1 LINE L1 1233 1622 -885 234 189 108 0 chr4 77169651 77169725 -125158622 + HAL1b LINE L1 746 827 -521 418 225 17 11 chr4 77169961 77170185 -125158162 + A-rich Low_complexity Low_complexity 1 225 0 484 328 38 19 chr4 77170547 77170971 -125157376 - ERVL LTR ERVL -851 4913 4428 769 220 38 6 chr4 77171032 77171191 -125157156 + MLT1E LTR MaLR 1 164 -429 320 225 166 96 chr4 77171186 77171284 -125157063 + MLT1E LTR MaLR 119 209 -384 * 828 208 18 6 chr4 77171284 77171452 -125156895 - MER45A DNA AcHobo -4 174 5 320 225 166 96 chr4 77171452 77171540 -125156807 + MLT1E LTR MaLR 209 318 -275 222 315 0 0 chr4 77171891 77171945 -125156402 - L3 LINE CR1 -1297 280 227 1910 100 23 13 chr4 77171972 77172271 -125156076 + AluY SINE Alu 1 302 -9 628 175 130 32 chr4 77172707 77172861 -125155486 + MER82 DNA MER2_type 14 182 -471 820 191 13 6 chr4 77172887 77173044 -125155303 - L1PA15 LINE L1 -13 6152 5995 3651 117 4 0 chr4 77173690 77174188 -125154159 - MER1A DNA MER1_type -1 528 29 1711 103 126 0 chr4 77174390 77174651 -125153696 + AluSx SINE Alu 1 294 -18 2579 31 3 0 chr4 77175120 77175414 -125152933 + AluYa5 SINE Alu 1 295 -16 225 83 0 0 chr4 77175578 77175614 -125152733 + (A)n Simple_repeat Simple_repeat 1 36 0 574 230 21 84 chr4 77175737 77176024 -125152323 + L1M4 LINE L1 4303 4571 -1575 612 287 129 0 chr4 77176278 77176487 -125151860 - MIR SINE MIR -3 259 24 761 161 77 14 chr4 77177203 77177346 -125151001 - Tigger3(Golem) DNA MER2_type -1 3028 2877 209 290 10 40 chr4 77177457 77177557 -125150790 + L2 LINE L2 3134 3230 -83 447 73 0 0 chr4 77178611 77178679 -125149668 - AluSp/q SINE Alu -5 308 241 3657 108 6 2 chr4 77178854 77179382 -125148965 - L1PA16 LINE L1 -209 5957 5428 2196 91 3 0 chr4 77179399 77179686 -125148661 - AluSx SINE Alu -24 288 1 184 297 0 0 chr4 77180130 77180167 -125148180 - MIR SINE MIR -139 69 33 299 211 132 0 chr4 77181202 77181278 -125147069 - MIR SINE MIR -52 210 125 23 33 0 0 chr4 77181390 77181420 -125146927 + AT_rich Low_complexity Low_complexity 1 30 0 612 149 0 137 chr4 77181779 77181940 -125146407 - FLAM_C SINE Alu -4 139 1 204 151 11 86 chr4 77183219 77183312 -125145035 + (TAA)n Simple_repeat Simple_repeat 3 88 0 588 331 113 28 chr4 77184055 77184381 -125143966 - L3 LINE CR1 -503 1074 721 758 258 43 14 chr4 77184384 77184593 -125143754 - MER58C DNA MER1_type 0 215 1 1319 256 95 49 chr4 77184599 77185138 -125143209 - MLT1F1 LTR MaLR 0 567 5 315 346 101 19 chr4 77185189 77185397 -125142950 - L3 LINE CR1 -909 668 444 273 119 0 0 chr4 77185561 77185603 -125142744 + (A)n Simple_repeat Simple_repeat 1 42 0 404 298 16 8 chr4 77186397 77186518 -125141829 + ERVL LTR ERVL 4107 4228 -1536 270 71 24 0 chr4 77186564 77186606 -125141741 - MLT1E3 LTR MaLR -3 621 579 1726 201 46 3 chr4 77186981 77187329 -125141018 - L1P LINE L1 -5783 363 1 3405 133 6 1 chr4 77187330 77187872 -125140475 + MER4B-int LTR ERV1 3507 4088 -2670 * 3558 101 57 22 chr4 77187871 77188453 -125139894 + MER4B-int LTR ERV1 4452 5053 -1705 1229 142 23 0 chr4 77188561 77188779 -125139568 + L1M4 LINE L1 3287 3509 -2637 1699 178 0 27 chr4 77188785 77189077 -125139270 + AluJo SINE Alu 6 289 -23 2773 195 36 13 chr4 77189079 77189711 -125138636 + L1 LINE L1 4737 5383 -763 2367 91 0 3 chr4 77190242 77190549 -125137798 + AluSc SINE Alu 4 309 0 2118 255 121 17 chr4 77190671 77191334 -125137013 + L1MEc LINE L1 37 768 -5628 26 0 0 0 chr4 77191508 77191534 -125136813 + AT_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chr4 77191838 77191884 -125136463 + AT_rich Low_complexity Low_complexity 1 46 0 180 0 0 0 chr4 77194531 77194551 -125133796 + (T)n Simple_repeat Simple_repeat 1 20 0 27 0 0 0 chr4 77195516 77195543 -125132804 + AT_rich Low_complexity Low_complexity 1 27 0 2215 25 61 4 chr4 77199179 77199458 -125128889 - AluY SINE Alu -16 295 1 32 0 0 0 chr4 77199924 77199956 -125128391 + AT_rich Low_complexity Low_complexity 1 32 0 31 26 0 0 chr4 77199999 77200037 -125128310 + AT_rich Low_complexity Low_complexity 1 38 0 3296 129 5 16 chr4 77250353 77250905 -125077442 + HERVK9 LTR ERVK 729 1274 -4642 552 116 12 0 chr4 77251672 77251758 -125076589 + AluSg/x SINE Alu 206 292 -17 600 246 6 12 chr4 77254287 77254454 -125073893 + L1M4 LINE L1 3554 3719 -2427 377 203 43 0 chr4 77254454 77254523 -125073824 - MER58 DNA MER1_type 0 2420 2349 225 94 0 0 chr4 77254531 77254563 -125073784 + (CCCCCT)n Simple_repeat Simple_repeat 4 35 0 4320 176 34 62 chr4 77255843 77257757 -125070590 - L1MC1 LINE L1 -287 6046 4198 2124 154 24 16 chr4 77258385 77258768 -125069579 - L1PA16 LINE L1 -9 6157 5772 4987 132 7 19 chr4 77258801 77259655 -125068692 - L1PA13 LINE L1 -2 6161 5299 288 0 0 0 chr4 77259655 77259687 -125068660 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2125 113 0 3 chr4 77259687 77259971 -125068376 - AluSx SINE Alu -29 283 1 4987 132 7 19 chr4 77259971 77260286 -125068061 - L1PA13 LINE L1 -862 5301 4980 1128 174 66 0 chr4 77260765 77261024 -125067323 - L1MA4 LINE L1 -2 6298 6023 192 227 61 45 chr4 77261286 77261352 -125066995 - MIR SINE MIR -10 252 186 24 53 0 0 chr4 77261971 77262009 -125066338 + AT_rich Low_complexity Low_complexity 1 38 0 6654 70 48 0 chr4 77262290 77263499 -125064848 - L1PA7 LINE L1 0 6154 4925 1163 295 45 76 chr4 77264074 77264667 -125063680 + L2 LINE L2 2008 2582 -732 843 303 49 11 chr4 77264681 77264968 -125063379 + L2 LINE L2 3006 3303 -10 290 325 0 0 chr4 77264982 77265059 -125063288 + MIR3 SINE MIR 117 193 -15 704 307 78 4 chr4 77265358 77265602 -125062745 - MIR SINE MIR 0 262 1 1956 106 50 7 chr4 77266134 77266417 -125061930 + AluSx SINE Alu 1 295 -17 509 260 18 87 chr4 77266832 77267051 -125061296 + MIR SINE MIR 54 257 -5 276 191 0 0 chr4 77267316 77267363 -125060984 - L2 LINE L2 0 3313 3267 342 294 67 0 chr4 77267983 77268102 -125060245 - L2 LINE L2 0 3313 3187 1511 190 48 10 chr4 77268124 77268293 -125060054 - AluJo SINE Alu -10 302 116 180 0 0 0 chr4 77268293 77268313 -125060034 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1511 190 48 10 chr4 77268313 77268432 -125059915 - AluJo SINE Alu -196 116 3 208 359 214 15 chr4 77268449 77268655 -125059692 - L2 LINE L2 -514 2800 2554 535 264 90 10 chr4 77268921 77269122 -125059225 + MER112 DNA MER1_type 2 218 -42 22 70 0 0 chr4 77269413 77269456 -125058891 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr4 77271728 77271764 -125056583 + AT_rich Low_complexity Low_complexity 1 36 0 1535 177 73 12 chr4 77273574 77273948 -125054399 + MER63C DNA MER1_type 178 571 -359 405 262 10 10 chr4 77274213 77274316 -125054031 + MIR3 SINE MIR 96 198 -10 675 288 76 14 chr4 77274440 77274728 -125053619 + MLT1I LTR MaLR 87 392 -17 5508 85 26 6 chr4 77274959 77275763 -125052584 + L1MA2 LINE L1 5485 6304 0 4565 163 30 6 chr4 77276404 77277238 -125051109 - L1MB8 LINE L1 -19 6159 5306 2364 106 8 17 chr4 77277238 77277596 -125050751 - THE1A LTR MaLR 0 355 1 2966 70 3 0 chr4 77277596 77277970 -125050377 - THE1A-int LTR MaLR 0 1580 1206 6424 105 5 1 chr4 77277990 77278914 -125049433 - THE1A-int LTR MaLR -592 988 61 1516 99 0 0 chr4 77278911 77279124 -125049223 - L1P3 LINE L1 -6248 213 1 * 442 268 92 7 chr4 77279275 77279417 -125048930 + MIR SINE MIR 1 154 -108 379 342 32 0 chr4 77280630 77280788 -125047559 + L2 LINE L2 2896 3058 -214 265 242 111 20 chr4 77281542 77281641 -125046706 - LTR33 LTR ERVL -6 515 408 264 30 0 0 chr4 77281676 77281709 -125046638 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 2323 119 0 0 chr4 77281717 77282027 -125046320 - AluSg SINE Alu 0 310 1 969 293 49 0 chr4 77282037 77282382 -125045965 - LTR33 LTR ERVL -159 362 1 180 246 215 0 chr4 77282527 77282592 -125045755 - L2 LINE L2 -1 3312 3234 210 256 70 35 chr4 77282673 77282759 -125045588 - L2 LINE L2 -166 3106 3018 466 292 22 13 chr4 77282827 77283053 -125045294 - L1ME LINE L1 -433 5688 5461 270 247 316 5 chr4 77283053 77283243 -125045104 + LTR50 LTR ERVL 203 451 -344 535 242 57 48 chr4 77283403 77283630 -125044717 - L1ME LINE L1 -2800 3346 3118 428 321 68 0 chr4 77283646 77283808 -125044539 - LTR50 LTR ERVL -619 176 4 287 233 23 12 chr4 77283877 77283963 -125044384 + CT-rich Low_complexity Low_complexity 1 87 0 452 247 305 23 chr4 77284137 77284311 -125044036 + MIR SINE MIR 37 259 -3 2186 88 0 3 chr4 77285194 77285533 -125042814 + AluSp SINE Alu 1 338 0 267 312 78 28 chr4 77285975 77286117 -125042230 - MIR SINE MIR -80 182 35 28 29 0 0 chr4 77286595 77286630 -125041717 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr4 77286705 77286740 -125041607 + AT_rich Low_complexity Low_complexity 1 35 0 814 139 16 8 chr4 77286928 77287057 -125041290 - FRAM SINE Alu -25 151 22 5298 127 46 5 chr4 77287057 77287973 -125040374 + L1PA16 LINE L1 5213 6157 -9 29 28 0 0 chr4 77288082 77288118 -125040229 + AT_rich Low_complexity Low_complexity 1 36 0 1865 169 110 3 chr4 77289098 77289488 -125038859 - MSTB1 LTR MaLR 0 432 1 584 237 77 14 chr4 77289634 77289841 -125038506 + MLT1J LTR MaLR 1 220 -291 2154 98 7 3 chr4 77289845 77290130 -125038217 + AluSc SINE Alu 1 286 -23 296 262 19 19 chr4 77290253 77290356 -125037991 + MLT1J LTR MaLR 379 481 -30 28 29 0 0 chr4 77290370 77290405 -125037942 + AT_rich Low_complexity Low_complexity 1 35 0 1781 178 7 7 chr4 77290449 77290753 -125037594 - AluJo SINE Alu -8 304 1 236 171 0 0 chr4 77290908 77290949 -125037398 - L2 LINE L2 0 3313 3273 619 313 16 0 chr4 77291060 77291252 -125037095 + LTR16C LTR ERVL 297 491 0 739 279 84 21 chr4 77291253 77291595 -125036752 - L2 LINE L2 -256 3057 2686 1408 281 103 57 chr4 77291640 77291793 -125036554 + HAL1 LINE L1 100 244 -2263 1872 178 59 70 chr4 77291793 77292265 -125036082 + MLT1C LTR MaLR 1 467 0 1408 281 103 57 chr4 77292265 77293404 -125034943 + HAL1 LINE L1 244 1452 -1055 776 239 6 6 chr4 77293404 77293580 -125034767 - MER45A DNA AcHobo 0 178 3 2073 259 94 109 chr4 77293615 77294010 -125034337 + L2 LINE L2 1350 1749 -1565 621 207 0 9 chr4 77294010 77294162 -125034185 - FLAM_A SINE Alu 0 158 8 2073 259 94 109 chr4 77294162 77295023 -125033324 + L2 LINE L2 1749 2698 -616 409 317 42 18 chr4 77295017 77295183 -125033164 - MIR SINE MIR -58 150 15 * 205 303 61 0 chr4 77295223 77295289 -125033058 + L2 LINE L2 3244 3313 0 2216 136 3 0 chr4 77295423 77295733 -125032614 - AluSx SINE Alu -1 311 1 3405 122 10 6 chr4 77295761 77296269 -125032078 + MER9 LTR ERVK 2 511 0 17874 81 7 5 chr4 77296269 77298765 -125029582 + HERVK9 LTR ERVK 1 2500 -3416 39217 63 10 1 chr4 77298771 77304862 -125023485 + L1PA5 LINE L1 11 6154 0 22287 94 5 1 chr4 77304868 77308005 -125020342 + HERVK9 LTR ERVK 2484 5634 -282 2079 61 18 0 chr4 77308101 77308378 -125019969 + HERVK9 LTR ERVK 5635 5916 0 3338 122 12 10 chr4 77308378 77308888 -125019459 + MER9 LTR ERVK 1 511 0 1228 304 34 13 chr4 77308928 77309435 -125018912 + L2 LINE L2 2720 3232 -81 1929 119 51 34 chr4 77309451 77309803 -125018544 + MER46B DNA MER2_type 1 233 -3 2486 75 0 0 chr4 77310089 77310397 -125017950 + AluY SINE Alu 1 308 -3 32 26 0 0 chr4 77310783 77310822 -125017525 + AT_rich Low_complexity Low_complexity 1 39 0 1873 165 0 0 chr4 77311109 77311394 -125016953 - AluJb SINE Alu -25 287 3 30 0 0 0 chr4 77312252 77312282 -125016065 + AT_rich Low_complexity Low_complexity 1 30 0 285 246 45 9 chr4 77312546 77312656 -125015691 + (TA)n Simple_repeat Simple_repeat 1 114 0 204 227 0 23 chr4 77312750 77312794 -125015553 - L2 LINE L2 -44 3228 3186 415 283 18 24 chr4 77313264 77313430 -125014917 - L1MC4a LINE L1 -1868 5940 5776 21 0 0 0 chr4 77315368 77315389 -125012958 + AT_rich Low_complexity Low_complexity 1 21 0 213 236 18 0 chr4 77316049 77316104 -125012243 + A-rich Low_complexity Low_complexity 5 60 0 1939 158 3 23 chr4 77316748 77317051 -125011296 - AluJo SINE Alu -15 297 1 266 298 60 0 chr4 77318738 77318822 -125009525 + MIR SINE MIR 45 133 -75 31 26 0 0 chr4 77319281 77319319 -125009028 + AT_rich Low_complexity Low_complexity 1 38 0 1822 170 7 0 chr4 77319319 77319602 -125008745 - AluJb SINE Alu -27 285 1 285 350 120 0 chr4 77319646 77319763 -125008584 - L2 LINE L2 0 3272 3142 931 241 44 36 chr4 77320178 77320427 -125007920 + MIR SINE MIR 2 252 -10 391 287 17 17 chr4 77320528 77320643 -125007704 - MIR3 SINE MIR -2 206 92 1942 151 7 0 chr4 77321162 77321466 -125006881 - AluSx SINE Alu -6 306 1 649 165 9 0 chr4 77321484 77321599 -125006748 - L1MC1 LINE L1 -5 6328 6213 32 67 0 0 chr4 77322027 77322087 -125006260 + AT_rich Low_complexity Low_complexity 1 60 0 2483 49 7 3 chr4 77324014 77324318 -125004029 + AluY SINE Alu 1 305 -6 209 128 26 0 chr4 77324906 77324945 -125003402 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 227 255 0 0 chr4 77325837 77325884 -125002463 + (TG)n Simple_repeat Simple_repeat 2 48 0 27 0 0 0 chr4 77326943 77326970 -125001377 + AT_rich Low_complexity Low_complexity 1 27 0 1061 203 10 0 chr4 77327335 77327542 -125000805 + MER3 DNA MER1_type 1 209 0 2513 44 7 0 chr4 77327653 77327947 -125000400 - AluY SINE Alu -15 296 1 1755 130 61 51 chr4 77328042 77328335 -125000012 + AluJb SINE Alu 4 299 -13 185 0 0 39 chr4 77329150 77329176 -124999171 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2496 166 37 12 chr4 77329176 77329659 -124998688 - L1MB1 LINE L1 -4 6164 5670 225 0 0 0 chr4 77331207 77331232 -124997115 + (CA)n Simple_repeat Simple_repeat 1 25 0 490 116 23 12 chr4 77332826 77332912 -124995435 - L1MA3 LINE L1 0 6305 6219 330 314 92 27 chr4 77333611 77333796 -124994551 - MIR SINE MIR -50 212 16 2232 104 3 0 chr4 77334505 77334804 -124993543 - AluSq SINE Alu -13 300 1 237 24 71 0 chr4 77336048 77336090 -124992257 + (CTAAT)n Simple_repeat Simple_repeat 4 48 0 597 299 19 55 chr4 77336424 77336530 -124991817 - MIR SINE MIR 0 262 154 2105 99 32 0 chr4 77336530 77336814 -124991533 - AluSp SINE Alu -20 293 1 597 299 19 55 chr4 77336814 77336978 -124991369 - MIR SINE MIR -108 154 2 181 378 27 37 chr4 77337447 77337635 -124990712 + L3b LINE CR1 1276 1461 -122 588 326 85 25 chr4 77337894 77338130 -124990217 - MIR SINE MIR 0 262 13 193 330 52 61 chr4 77338989 77339104 -124989243 - L2 LINE L2 -6 3307 3194 32 26 0 0 chr4 77339736 77339775 -124988572 + AT_rich Low_complexity Low_complexity 1 39 0 279 190 0 0 chr4 77339821 77339879 -124988468 + (TG)n Simple_repeat Simple_repeat 1 58 0 1489 80 0 0 chr4 77339910 77340097 -124988250 - AluY SINE Alu -14 297 111 281 314 29 9 chr4 77341314 77341419 -124986928 - MIR SINE MIR -49 213 107 22 80 0 0 chr4 77342386 77342436 -124985911 + AT_rich Low_complexity Low_complexity 1 50 0 357 286 7 91 chr4 77342472 77342626 -124985721 - MIR SINE MIR -33 229 89 388 154 51 26 chr4 77342747 77342825 -124985522 - MER116 DNA Mariner 0 80 1 3498 155 32 10 chr4 77343579 77344722 -124983625 + L1P5 LINE L1 4628 5788 -363 233 163 0 0 chr4 77344715 77344758 -124983589 - L1P5 LINE L1 -364 5787 5745 * 265 127 0 32 chr4 77344759 77344822 -124983525 + (TA)n Simple_repeat Simple_repeat 2 62 0 2179 78 84 48 chr4 77344845 77345202 -124983145 + L1PB1 LINE L1 5782 6151 0 696 170 28 35 chr4 77346517 77346658 -124981689 - L1MD3 LINE L1 -452 7543 7404 306 196 18 0 chr4 77346658 77346714 -124981633 - MLT1F1 LTR MaLR -442 125 69 2587 226 79 43 chr4 77346781 77347551 -124980796 - L1MC3 LINE L1 -750 7035 6238 202 329 73 0 chr4 77348668 77348750 -124979597 - MER91C DNA MER1_type -20 120 33 25 75 0 0 chr4 77349240 77349293 -124979054 + AT_rich Low_complexity Low_complexity 1 53 0 217 385 59 22 chr4 77349375 77349510 -124978837 + L2 LINE L2 3133 3272 0 333 0 0 0 chr4 77351159 77351196 -124977151 + (TG)n Simple_repeat Simple_repeat 2 38 0 1689 214 19 37 chr4 77351196 77351574 -124976773 - MLT1A2 LTR MaLR -3 371 1 978 224 98 78 chr4 77351653 77352011 -124976336 + MLT1A1 LTR MaLR 1 365 0 192 297 188 12 chr4 77354037 77354202 -124974145 - MIR SINE MIR 0 262 69 405 304 20 7 chr4 77354503 77354651 -124973696 + L2 LINE L2 2186 2335 -979 335 195 13 26 chr4 77354773 77354850 -124973497 + MER94 DNA DNA 42 117 -17 229 310 70 10 chr4 77354914 77355014 -124973333 + L2 LINE L2 2557 2662 -652 569 359 52 25 chr4 77355217 77355579 -124972768 + L2 LINE L2 2897 3268 -4 662 248 87 8 chr4 77355580 77355822 -124972525 - MIR SINE MIR 0 262 2 181 219 0 0 chr4 77356093 77356125 -124972222 - L2 LINE L2 -19 3253 3222 252 161 0 0 chr4 77356190 77356252 -124972095 + (TA)n Simple_repeat Simple_repeat 2 63 0 260 258 30 0 chr4 77356370 77356436 -124971911 - L2 LINE L2 -2 3270 3203 572 223 50 67 chr4 77356987 77357269 -124971078 - L1ME4a LINE L1 -76 6045 5769 876 214 6 22 chr4 77357285 77357463 -124970884 - MER5B DNA MER1_type -3 175 1 24 0 0 0 chr4 77358446 77358470 -124969877 + AT_rich Low_complexity Low_complexity 1 24 0 207 167 0 0 chr4 77358680 77358722 -124969625 + (TA)n Simple_repeat Simple_repeat 1 42 0 275 331 96 6 chr4 77358974 77359131 -124969216 + MIR3 SINE MIR 32 202 -6 447 314 111 18 chr4 77360329 77360555 -124967792 + L3 LINE CR1 1106 1352 -225 373 231 44 11 chr4 77360596 77360687 -124967660 + MIR SINE MIR 76 169 -93 187 288 30 15 chr4 77360712 77360778 -124967569 - MIR SINE MIR 0 262 196 522 332 96 0 chr4 77360894 77361081 -124967266 - MIR SINE MIR -57 205 1 429 191 88 29 chr4 77361117 77361253 -124967094 + MER53 DNA DNA 1 144 -45 298 319 170 22 chr4 77361256 77361438 -124966909 + L3 LINE CR1 1362 1570 -7 33 66 0 0 chr4 77361854 77361915 -124966432 + AT_rich Low_complexity Low_complexity 1 61 0 212 133 44 0 chr4 77361975 77362020 -124966327 + (TATG)n Simple_repeat Simple_repeat 3 49 0 1368 133 5 0 chr4 77362106 77362324 -124966023 - L1PA10 LINE L1 0 6168 5950 2624 26 0 7 chr4 77363341 77363646 -124964701 + AluY SINE Alu 1 303 -8 250 261 29 0 chr4 77363748 77363817 -124964530 - MIR SINE MIR -117 145 75 198 150 0 0 chr4 77364720 77364760 -124963587 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 208 289 96 10 chr4 77364832 77364936 -124963411 - MIR SINE MIR -42 220 108 300 288 136 40 chr4 77367511 77367636 -124960711 - L2 LINE L2 0 3272 3136 * 407 231 120 9 chr4 77367633 77367741 -124960606 + L2 LINE L2 3153 3272 0 217 376 24 0 chr4 77369054 77369139 -124959208 + L3 LINE CR1 1489 1575 -2 214 228 26 18 chr4 77369265 77369379 -124958968 + CT-rich Low_complexity Low_complexity 3 117 0 217 376 24 0 chr4 77370329 77370414 -124957933 + L3 LINE CR1 1489 1575 -2 880 301 65 24 chr4 77370702 77371071 -124957276 + L2 LINE L2 2930 3313 0 302 56 0 0 chr4 77371648 77371684 -124956663 + U2 snRNA snRNA 1 36 -152 352 402 27 8 chr4 77373565 77373821 -124954526 + MIR SINE MIR 2 262 0 38 39 0 0 chr4 77376076 77376128 -124952219 + AT_rich Low_complexity Low_complexity 1 52 0 691 128 8 0 chr4 77376428 77376545 -124951802 - L1MA9 LINE L1 0 6312 6195 214 316 0 0 chr4 77378186 77378243 -124950104 - L2 LINE L2 -5 3308 3252 644 223 15 0 chr4 77378909 77379039 -124949308 - FLAM_A SINE Alu -1 132 1 2227 117 3 0 chr4 77379359 77379666 -124948681 - AluSg SINE Alu -2 308 1 2643 267 158 16 chr4 77379743 77380984 -124947363 + L2 LINE L2 1876 3301 -12 639 112 0 0 chr4 77381159 77381257 -124947090 + (TG)n Simple_repeat Simple_repeat 2 99 0 263 82 0 41 chr4 77381557 77381640 -124946707 - L1PA4 LINE L1 0 6155 6108 * 2162 24 0 0 chr4 77381634 77381884 -124946463 + L1PA5 LINE L1 5622 5871 -283 1311 258 57 29 chr4 77382002 77382870 -124945477 + L1M4 LINE L1 2801 3719 -2427 377 203 43 0 chr4 77382870 77382939 -124945408 - MER58 DNA MER1_type 0 2420 2349 640 130 14 27 chr4 77382947 77383093 -124945254 + C-rich Low_complexity Low_complexity 6 149 0 975 127 0 17 chr4 77383095 77383276 -124945071 + (TTC)n Simple_repeat Simple_repeat 1 178 0 401 313 30 15 chr4 77383295 77383426 -124944921 - MER58C DNA MER1_type -82 133 1 3009 250 52 5 chr4 77383442 77384374 -124943973 + L1M4 LINE L1 3753 4727 -1419 1095 195 18 14 chr4 77384365 77384642 -124943705 + L1M1 LINE L1 2667 2944 -4621 * 1463 309 30 58 chr4 77384647 77385252 -124943095 + L1MA7 LINE L1 1873 2460 -5036 1044 194 10 10 chr4 77385252 77385458 -124942889 + MER65A LTR ERV1 1 206 -239 5306 218 61 37 chr4 77385458 77385586 -124942761 + L1MA7 LINE L1 3053 3176 -4389 1959 115 27 24 chr4 77385586 77385881 -124942466 + AluSg SINE Alu 1 296 -14 5306 218 61 37 chr4 77385881 77387726 -124940621 + L1MA7 LINE L1 3176 5066 -2499 4360 168 100 21 chr4 77387791 77389485 -124938862 + L1MA7 LINE L1 5872 7705 -5 1965 264 89 34 chr4 77389530 77390545 -124937802 - L1MC4a LINE L1 -1484 6324 5254 22 0 0 0 chr4 77390654 77390676 -124937671 + AT_rich Low_complexity Low_complexity 1 22 0 1902 114 17 45 chr4 77390676 77391034 -124937313 - L1PA13 LINE L1 -8 6155 5808 21 0 0 0 chr4 77391758 77391779 -124936568 + AT_rich Low_complexity Low_complexity 1 21 0 5612 115 45 2 chr4 77391779 77393115 -124935232 - L1PA13 LINE L1 -8 6806 5458 15841 205 24 22 chr4 77393116 77397089 -124931258 - L1PA13 LINE L1 -1451 5346 1382 1889 155 24 29 chr4 77397089 77397464 -124930883 - THE1C LTR MaLR 0 375 3 9759 109 50 40 chr4 77397466 77399030 -124929317 - THE1C-int LTR MaLR 0 1580 1 1719 134 45 58 chr4 77399030 77399410 -124928937 - THE1C LTR MaLR 0 375 1 15841 205 24 22 chr4 77399410 77399525 -124928822 - L1PA13 LINE L1 -5415 1382 1269 2068 127 27 0 chr4 77399525 77399824 -124928523 - AluSx SINE Alu -5 307 1 15841 205 24 22 chr4 77399824 77401065 -124927282 - L1PA13 LINE L1 -5528 1269 1 414 296 119 32 chr4 77401460 77401713 -124926634 + LTR16C LTR ERVL 215 489 -2 207 0 0 0 chr4 77402099 77402122 -124926225 + (TATG)n Simple_repeat Simple_repeat 2 24 0 699 248 99 16 chr4 77402855 77403178 -124925169 - L1MC4 LINE L1 -709 7333 6984 1967 144 7 0 chr4 77403219 77403518 -124924829 + AluSg SINE Alu 1 301 -9 2605 193 45 16 chr4 77403518 77403617 -124924730 - L1MA9 LINE L1 -40 6272 6177 1960 125 34 3 chr4 77403617 77403912 -124924435 - AluSx SINE Alu -8 304 1 2605 193 45 16 chr4 77403912 77404284 -124924063 - L1MA9 LINE L1 -135 6177 5778 231 36 0 0 chr4 77404284 77404312 -124924035 + (TG)n Simple_repeat Simple_repeat 1 28 0 2605 193 45 16 chr4 77404312 77404420 -124923927 - L1MA9 LINE L1 -534 5778 5675 279 73 0 0 chr4 77404431 77404472 -124923875 - L1MA3 LINE L1 0 6305 6265 * 408 145 0 0 chr4 77404470 77404539 -124923808 - L1MA9 LINE L1 -628 5684 5616 240 228 35 18 chr4 77405528 77405585 -124922762 + MER91 DNA MER1_type 133 190 0 222 360 65 7 chr4 77405976 77406115 -124922232 + L2 LINE L2 2715 2861 -453 1958 131 7 7 chr4 77407516 77407914 -124920433 - AluSx SINE Alu 0 398 1 527 239 8 0 chr4 77408500 77408617 -124919730 + FLAM_A SINE Alu 16 133 -9 871 169 11 0 chr4 77408635 77408812 -124919535 + GA-rich Low_complexity Low_complexity 1 179 0 264 235 235 0 chr4 77409262 77409343 -124919004 - L2 LINE L2 -1 3271 3172 245 120 40 0 chr4 77409927 77409977 -124918370 + CT-rich Low_complexity Low_complexity 4 55 0 458 298 12 25 chr4 77411261 77411422 -124916925 + MER117 DNA MER1_type 9 167 -30 317 148 28 93 chr4 77412289 77412397 -124915950 + CT-rich Low_complexity Low_complexity 2 102 0 276 221 0 0 chr4 77412402 77412470 -124915877 - L1MA8 LINE L1 -7 6284 6217 * 1140 172 71 34 chr4 77412446 77412746 -124915601 - L1MA8 LINE L1 -13 6290 5974 1476 117 27 43 chr4 77412817 77413073 -124915274 + L1PA8 LINE L1 5912 6163 -9 587 207 84 67 chr4 77413108 77413287 -124915060 + FRAM SINE Alu 1 174 -2 1670 80 0 13 chr4 77413485 77413709 -124914638 - AluY SINE Alu -7 304 84 186 333 10 20 chr4 77414068 77414167 -124914180 - L2 LINE L2 -316 2956 2859 183 220 0 20 chr4 77414488 77414538 -124913809 - L2 LINE L2 -1 3312 3264 709 268 52 16 chr4 77415348 77415598 -124912749 - MIR SINE MIR 0 262 4 199 310 181 17 chr4 77415618 77415734 -124912613 + MIR SINE MIR 20 154 -108 1078 70 21 0 chr4 77415743 77415885 -124912462 + AluSg/x SINE Alu 156 300 -9 338 358 87 5 chr4 77416376 77416583 -124911764 - L2 LINE L2 -850 2464 2241 701 245 91 17 chr4 77416589 77416830 -124911517 - MIR SINE MIR 0 262 4 216 0 0 0 chr4 77417131 77417155 -124911192 + (TG)n Simple_repeat Simple_repeat 2 25 0 225 277 54 101 chr4 77417565 77417782 -124910565 + MIR SINE MIR 41 254 -8 601 201 195 0 chr4 77419128 77419292 -124909055 - MLT1D LTR MaLR -4 501 306 588 308 66 39 chr4 77419302 77419845 -124908502 - L1ME4a LINE L1 -268 5853 5296 433 294 27 49 chr4 77420050 77420234 -124908113 - L3 LINE CR1 -156 1421 1242 295 275 25 0 chr4 77420309 77420389 -124907958 + MIR SINE MIR 71 152 -110 27 29 0 0 chr4 77420526 77420560 -124907787 + AT_rich Low_complexity Low_complexity 1 34 0 267 103 0 0 chr4 77421324 77421363 -124906984 + (TTA)n Simple_repeat Simple_repeat 1 39 0 1594 169 32 4 chr4 77421367 77421646 -124906701 - AluJb SINE Alu -25 287 1 23 33 0 0 chr4 77422342 77422372 -124905975 + AT_rich Low_complexity Low_complexity 1 30 0 212 203 0 62 chr4 77423947 77424011 -124904336 + (CTATT)n Simple_repeat Simple_repeat 4 63 0 21 36 0 0 chr4 77424099 77424127 -124904220 + AT_rich Low_complexity Low_complexity 1 28 0 1837 131 3 0 chr4 77424316 77424614 -124903733 - L1MA4 LINE L1 -5 6295 5997 737 325 24 0 chr4 77427309 77427518 -124900829 - MIR SINE MIR -17 245 32 233 137 60 34 chr4 77427533 77427650 -124900697 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 28 0 0 0 chr4 77427659 77427687 -124900660 + AT_rich Low_complexity Low_complexity 1 28 0 1453 124 22 0 chr4 77427687 77427913 -124900434 - L1PA16 LINE L1 -9 6157 5927 269 108 0 0 chr4 77427927 77427964 -124900383 - L1PA16 LINE L1 -1407 4739 4703 260 278 206 24 chr4 77428346 77428472 -124899875 - L2 LINE L2 0 3313 3165 283 322 100 26 chr4 77428514 77428725 -124899622 + MIR SINE MIR 12 239 -23 247 350 150 0 chr4 77429112 77429232 -124899115 + L3 LINE CR1 1284 1421 -156 391 293 0 8 chr4 77429733 77429856 -124898491 + MER117 DNA MER1_type 29 150 -47 269 256 77 0 chr4 77430253 77430331 -124898016 - MIR3 SINE MIR -37 171 88 485 268 58 83 chr4 77431572 77431633 -124896714 - MIR SINE MIR -15 247 186 1381 216 12 41 chr4 77431633 77431953 -124896394 - AluJo SINE Alu -1 311 1 485 268 58 83 chr4 77431953 77432096 -124896251 - MIR SINE MIR -76 186 48 1572 170 9 77 chr4 77432661 77433052 -124895295 - MLT1A1 LTR MaLR 0 457 1 1193 229 21 0 chr4 77433591 77433827 -124894520 - AluJo SINE Alu -68 244 4 2113 110 0 20 chr4 77434393 77434692 -124893655 + AluSp SINE Alu 3 295 -18 24686 132 12 110 chr4 77435034 77442033 -124886314 - L1MA3 LINE L1 0 6305 11 10621 122 183 8 chr4 77442044 77444250 -124884097 - L1PBa LINE L1 -3628 3234 636 1003 198 5 0 chr4 77444252 77444449 -124883898 - L1PBa LINE L1 -6663 200 3 16464 160 24 31 chr4 77444453 77445342 -124883005 - L1M1 LINE L1 -4382 3183 2289 1682 174 7 45 chr4 77445342 77445652 -124882695 - AluJb SINE Alu -14 298 1 16464 160 24 31 chr4 77445652 77445663 -124882684 - L1M1 LINE L1 -5276 2289 2279 1838 172 3 10 chr4 77445663 77445971 -124882376 - AluSx SINE Alu -6 306 1 16464 160 24 31 chr4 77445971 77448226 -124880121 - L1M1 LINE L1 -5286 2279 50 768 332 50 16 chr4 77448706 77449070 -124879277 - MLT1I LTR MaLR -10 399 24 355 253 11 11 chr4 77449747 77449842 -124878505 - MLT1I LTR MaLR -10 399 305 2201 235 24 22 chr4 77449954 77450542 -124877805 + MER76 LTR ERV 96 684 -4 527 290 131 35 chr4 77450547 77450837 -124877510 - MLT1J2 LTR MaLR -129 321 4 405 266 11 0 chr4 77451643 77451737 -124876610 + MER5A DNA MER1_type 11 105 -84 769 264 118 31 chr4 77451831 77452381 -124875966 - MLT1G1 LTR MaLR 0 555 1 216 0 0 0 chr4 77452970 77452994 -124875353 + (T)n Simple_repeat Simple_repeat 1 24 0 64 14 0 0 chr4 77453361 77453432 -124874915 + AT_rich Low_complexity Low_complexity 1 71 0 2051 122 0 50 chr4 77453584 77453903 -124874444 - AluSx SINE Alu -9 303 1 526 110 0 30 chr4 77454767 77454867 -124873480 - L1P LINE L1 -805 5358 5262 272 62 0 16 chr4 77455650 77455699 -124872648 - L1PA13 LINE L1 0 6165 6120 186 282 28 28 chr4 77455771 77455842 -124872505 + L2 LINE L2 2227 2297 -1017 337 238 166 39 chr4 77457226 77457407 -124870940 - MER102b DNA MER1_type -1 340 137 466 306 32 19 chr4 77457930 77458087 -124870260 + MIR3 SINE MIR 22 180 -28 288 329 28 35 chr4 77458317 77458421 -124869926 + MIR3 SINE MIR 6 110 -98 1807 201 0 0 chr4 77458421 77458725 -124869622 + AluJb SINE Alu 1 304 -8 288 329 28 35 chr4 77458725 77458763 -124869584 + MIR3 SINE MIR 110 147 -61 2229 62 0 4 chr4 77459563 77459836 -124868511 - AluY SINE Alu -13 298 27 356 275 108 24 chr4 77459860 77460027 -124868320 - MIR SINE MIR -50 212 32 899 169 51 11 chr4 77461699 77461877 -124866470 - MER5A DNA MER1_type -3 186 2 373 345 17 40 chr4 77462022 77462199 -124866148 + L2 LINE L2 2550 2722 -592 367 319 88 40 chr4 77462301 77462424 -124865923 + L2 LINE L2 2964 3080 -192 2805 191 52 53 chr4 77462424 77463135 -124865212 - MER67C LTR ERV1 0 710 1 367 319 88 40 chr4 77463135 77463262 -124865085 + L2 LINE L2 3080 3226 -46 1134 124 0 6 chr4 77463662 77463823 -124864524 + AluSg/x SINE Alu 130 289 -23 620 312 125 38 chr4 77463974 77464526 -124863821 - L2 LINE L2 -2605 709 110 489 305 99 14 chr4 77465219 77465432 -124862915 - MIR SINE MIR -12 250 20 30 0 0 0 chr4 77465955 77465985 -124862362 + AT_rich Low_complexity Low_complexity 1 30 0 269 221 67 10 chr4 77465990 77466094 -124862253 - L1ME4a LINE L1 -18 6103 5994 473 102 16 67 chr4 77466096 77466354 -124861993 + (TA)n Simple_repeat Simple_repeat 1 244 0 317 167 67 44 chr4 77466357 77466447 -124861900 + L1MC4 LINE L1 6612 6703 -1339 737 110 8 0 chr4 77466826 77466953 -124861394 + (GGAAA)n Simple_repeat Simple_repeat 2 129 0 3965 224 35 10 chr4 77466954 77468096 -124860251 + L1 LINE L1 4152 5322 -824 6986 152 38 5 chr4 77468198 77469685 -124858662 - L1M1 LINE L1 -743 5403 3928 418 254 8 0 chr4 77469798 77469916 -124858431 + L1 LINE L1 2217 2335 -3811 4724 213 19 9 chr4 77469928 77471161 -124857186 + L1 LINE L1 2676 3921 -2225 279 0 0 0 chr4 77471323 77471354 -124856993 + (TA)n Simple_repeat Simple_repeat 2 32 0 12629 153 50 109 chr4 77471694 77474949 -124853398 + L1P LINE L1 2 3063 -3083 249 83 0 0 chr4 77475008 77475044 -124853303 + (CA)n Simple_repeat Simple_repeat 1 36 0 636 245 78 25 chr4 77477540 77477744 -124850603 + MER58A DNA MER1_type 10 224 0 38543 41 1 2 chr4 77478063 77484216 -124844131 + L1PA3 LINE L1 1 6152 -3 898 204 16 31 chr4 77484448 77484639 -124843708 - MER5A DNA MER1_type 0 189 2 2059 87 7 0 chr4 77484847 77485134 -124843213 + L1PA7 LINE L1 5865 6153 -1 417 297 187 45 chr4 77485914 77486224 -124842123 + L3 LINE CR1 738 1091 -486 287 73 0 0 chr4 77486663 77486704 -124841643 + U3 snRNA snRNA 1 41 -176 332 263 113 44 chr4 77487823 77487983 -124840364 + L3 LINE CR1 1088 1258 -319 217 332 81 71 chr4 77488344 77488555 -124839792 + L3b LINE CR1 1323 1535 -48 342 0 0 0 chr4 77488625 77488663 -124839684 + (TG)n Simple_repeat Simple_repeat 2 39 0 2088 115 3 3 chr4 77489007 77489303 -124839044 - AluSx SINE Alu -16 296 1 3948 114 53 12 chr4 77489498 77490171 -124838176 - L1MA3 LINE L1 -101 6204 5504 19339 148 40 55 chr4 77490614 77491868 -124836479 - L1M1 LINE L1 -3933 3632 2361 995 40 0 0 chr4 77491868 77491994 -124836353 - AluY SINE Alu 0 311 186 19339 148 40 55 chr4 77491994 77494195 -124834152 - L1M1 LINE L1 -5204 2361 105 207 0 0 0 chr4 77494195 77494218 -124834129 + (TG)n Simple_repeat Simple_repeat 2 24 0 19339 148 40 55 chr4 77494218 77494308 -124834039 - L1M1 LINE L1 -7460 105 15 240 292 0 46 chr4 77495315 77495380 -124832967 - L2 LINE L2 -8 3264 3203 335 242 142 8 chr4 77495765 77495885 -124832462 - MIR SINE MIR -4 258 123 447 331 84 0 chr4 77495935 77496101 -124832246 + MIR SINE MIR 11 190 -72 310 86 186 43 chr4 77496125 77496195 -124832152 - MER116 DNA Mariner 0 80 1 24 32 0 0 chr4 77496485 77496516 -124831831 + AT_rich Low_complexity Low_complexity 1 31 0 180 125 0 0 chr4 77496585 77496617 -124831730 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 222 323 0 0 chr4 77496617 77496679 -124831668 - L2 LINE L2 0 3313 3252 28 29 0 0 chr4 77496717 77496752 -124831595 + AT_rich Low_complexity Low_complexity 1 35 0 2439 191 75 33 chr4 77496880 77497316 -124831031 - MLT1F1 LTR MaLR 0 567 102 1004 83 35 6 chr4 77497316 77497485 -124830862 + L1MA7 LINE L1 6118 6291 0 2439 191 75 33 chr4 77497485 77497592 -124830755 - MLT1F1 LTR MaLR -465 102 1 322 234 135 113 chr4 77497712 77498070 -124830277 - L1ME4a LINE L1 -4 6117 5739 2159 101 3 3 chr4 77498070 77498366 -124829981 - AluSx SINE Alu -16 296 1 322 234 135 113 chr4 77498366 77498600 -124829747 - L1ME4a LINE L1 -382 5739 5512 876 214 50 53 chr4 77498700 77498981 -124829366 + LTR41 LTR ERVL 3 282 -491 346 191 9 45 chr4 77499504 77499614 -124828733 + LTR41 LTR ERVL 662 767 -6 393 264 139 0 chr4 77502016 77502145 -124826202 + L2 LINE L2 2395 2541 -773 22 35 0 0 chr4 77502731 77502760 -124825587 + AT_rich Low_complexity Low_complexity 1 29 0 216 333 184 9 chr4 77502768 77502882 -124825465 + MER5A DNA MER1_type 56 189 0 1963 107 89 11 chr4 77503593 77503874 -124824473 - AluSx SINE Alu -8 304 2 538 347 122 13 chr4 77504037 77504487 -124823860 - L1MC4a LINE L1 -1902 5906 5408 217 49 0 49 chr4 77504818 77504859 -124823488 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 7695 17 0 0 chr4 77504859 77505992 -124822355 - L1PA3 LINE L1 -24 6131 4999 21 0 0 0 chr4 77507276 77507297 -124821050 + AT_rich Low_complexity Low_complexity 1 21 0 203 240 0 40 chr4 77507366 77507441 -124820906 + T-rich Low_complexity Low_complexity 3 74 0 218 214 36 0 chr4 77507763 77507819 -124820528 + (CA)n Simple_repeat Simple_repeat 2 59 0 266 250 65 137 chr4 77508082 77508250 -124820097 + MIR3 SINE MIR 25 180 -28 213 328 7 5 chr4 77508725 77508879 -124819468 - MIR SINE MIR -32 230 2 653 311 12 58 chr4 77509770 77510027 -124818320 + MIR SINE MIR 10 254 -8 311 364 76 0 chr4 77510641 77510773 -124817574 - MIR3 SINE MIR -15 193 52 23 0 0 0 chr4 77510773 77510796 -124817551 + AT_rich Low_complexity Low_complexity 1 23 0 1360 25 6 0 chr4 77510796 77510956 -124817391 - L1PA3 LINE L1 -3 6152 5992 29 28 0 0 chr4 77512557 77512593 -124815754 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr4 77512656 77512684 -124815663 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 77513026 77513054 -124815293 + AT_rich Low_complexity Low_complexity 1 28 0 671 244 24 18 chr4 77513537 77513705 -124814642 + MIR SINE MIR 78 246 -16 363 127 0 0 chr4 77513724 77513787 -124814560 + (CAT)n Simple_repeat Simple_repeat 2 64 0 194 267 0 33 chr4 77514048 77514108 -124814239 - MIR SINE MIR -46 216 159 803 176 34 34 chr4 77516038 77516243 -124812104 + L1MA6 LINE L1 6096 6300 0 399 345 36 73 chr4 77516779 77517080 -124811267 - L2 LINE L2 -31 3241 2952 235 336 16 16 chr4 77517823 77517948 -124810399 + MIR SINE MIR 3 127 -135 2362 78 14 0 chr4 77517977 77518272 -124810075 - AluSx SINE Alu -13 299 1 507 310 32 6 chr4 77519369 77519527 -124808820 + MIR SINE MIR 8 169 -93 411 241 0 0 chr4 77519860 77519939 -124808408 + L2 LINE L2 3231 3309 -4 27 62 0 0 chr4 77520102 77520150 -124808197 + AT_rich Low_complexity Low_complexity 1 48 0 1966 141 3 16 chr4 77520151 77520455 -124807892 - AluSx SINE Alu -12 300 1 22 0 0 0 chr4 77520641 77520663 -124807684 + AT_rich Low_complexity Low_complexity 1 22 0 6754 161 17 2 chr4 77521107 77523080 -124805267 + L1PA13 LINE L1 4157 6159 -4 21 36 0 0 chr4 77523115 77523143 -124805204 + AT_rich Low_complexity Low_complexity 1 28 0 294 287 87 0 chr4 77523206 77523321 -124805026 - L1ME LINE L1 -330 5791 5667 198 167 0 0 chr4 77523521 77523557 -124804790 + (TG)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr4 77523672 77523694 -124804653 + AT_rich Low_complexity Low_complexity 1 22 0 249 269 117 6 chr4 77524066 77524202 -124804145 + MIR SINE MIR 46 147 -61 1422 256 95 4 chr4 77524609 77525263 -124803084 + L2 LINE L2 2592 3308 -5 378 239 0 71 chr4 77525442 77525555 -124802792 + L2 LINE L2 3209 3313 0 888 251 0 0 chr4 77526205 77526384 -124801963 + MER58A DNA MER1_type 42 220 -4 275 347 85 25 chr4 77527093 77527292 -124801055 - L2 LINE L2 -488 2826 2616 2413 84 0 0 chr4 77527763 77528073 -124800274 + AluY SINE Alu 1 310 -1 21 0 0 0 chr4 77528686 77528707 -124799640 + AT_rich Low_complexity Low_complexity 1 21 0 1910 82 12 4 chr4 77529176 77529431 -124798916 + AluY SINE Alu 28 321 0 313 27 0 0 chr4 77529431 77529468 -124798879 + (CAAAA)n Simple_repeat Simple_repeat 2 180 0 2409 102 0 0 chr4 77529834 77530147 -124798200 - AluSq SINE Alu 0 313 1 1303 90 25 0 chr4 77530709 77530909 -124797438 - L1PA16 LINE L1 -642 5524 5320 * 3718 157 0 0 chr4 77530904 77531484 -124796863 + L1PA16 LINE L1 5525 6104 -62 233 346 73 39 chr4 77532056 77532480 -124795867 + L2 LINE L2 2637 3072 -241 831 181 78 0 chr4 77532554 77532720 -124795627 + MER5A DNA MER1_type 3 181 -8 805 134 0 37 chr4 77532767 77532954 -124795393 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 199 155 0 52 chr4 77532958 77533016 -124795331 + CT-rich Low_complexity Low_complexity 1 55 0 204 275 42 21 chr4 77534841 77534963 -124793384 - MER5A DNA MER1_type -5 184 7 1750 277 148 22 chr4 77534977 77535851 -124792496 + L2 LINE L2 2329 3309 -4 192 77 0 0 chr4 77537407 77537433 -124790914 + (T)n Simple_repeat Simple_repeat 1 26 0 1138 268 176 35 chr4 77538556 77539210 -124789137 + L2 LINE L2 1897 2642 -672 1321 181 12 12 chr4 77539211 77539454 -124788893 + MLT1A1 LTR MaLR 1 243 -122 1233 158 0 0 chr4 77539951 77540141 -124788206 + AluSg/x SINE Alu 123 312 0 239 318 0 0 chr4 77540993 77541059 -124787288 - L2 LINE L2 -8 3305 3240 387 0 0 0 chr4 77541161 77541204 -124787143 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 222 125 25 0 chr4 77543090 77543130 -124785217 + CT-rich Low_complexity Low_complexity 2 42 0 414 0 0 0 chr4 77543237 77543283 -124785064 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 402 273 80 33 chr4 77544530 77544680 -124783667 - MIR SINE MIR -89 173 17 222 366 67 21 chr4 77545907 77546071 -124782276 - MER5B DNA MER1_type 0 189 7 333 0 0 0 chr4 77546236 77546273 -124782074 + (CA)n Simple_repeat Simple_repeat 2 38 0 1770 132 69 21 chr4 77546541 77546830 -124781517 + AluJb SINE Alu 1 303 -9 22 70 0 0 chr4 77547391 77547434 -124780913 + AT_rich Low_complexity Low_complexity 1 43 0 301 350 118 31 chr4 77547544 77547867 -124780480 - L1MC4a LINE L1 -1858 5950 5600 22 0 0 0 chr4 77547984 77548006 -124780341 + AT_rich Low_complexity Low_complexity 1 22 0 378 285 67 64 chr4 77548040 77548430 -124779917 - L1MC4a LINE L1 -814 5332 4942 816 326 81 53 chr4 77548473 77549376 -124778971 + L2 LINE L2 2407 3298 -15 22 0 0 0 chr4 77549889 77549911 -124778436 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr4 77550160 77550196 -124778151 + AT_rich Low_complexity Low_complexity 1 36 0 4738 186 45 29 chr4 77550762 77552721 -124775626 - L1MA9 LINE L1 -38 7295 5304 180 111 0 0 chr4 77552721 77552748 -124775599 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 4184 211 39 45 chr4 77552785 77553715 -124774632 - L1MA9 LINE L1 -2033 5134 4213 4806 75 1 11 chr4 77553715 77554367 -124773980 - L1PA8A LINE L1 -1 6130 5485 4184 211 39 45 chr4 77554367 77554699 -124773648 - L1MA9 LINE L1 -2954 4213 3880 2953 233 62 3 chr4 77554688 77555346 -124773001 - L1MA9 LINE L1 -6459 709 13 * 213 65 0 0 chr4 77555393 77555424 -124772923 + (CA)n Simple_repeat Simple_repeat 2 32 0 25 31 0 0 chr4 77555465 77555497 -124772850 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chr4 77555800 77555833 -124772514 + AT_rich Low_complexity Low_complexity 1 33 0 8537 224 42 17 chr4 77555880 77561504 -124766843 + L1PBa LINE L1 3 4869 -1993 324 0 0 0 chr4 77561504 77561540 -124766807 + (GAAA)n Simple_repeat Simple_repeat 4 39 0 4812 132 7 26 chr4 77561640 77562463 -124765884 + L1PB3 LINE L1 5347 6154 0 675 292 22 0 chr4 77563046 77563320 -124765027 - L1M4 LINE L1 -1253 4893 4614 12182 182 40 17 chr4 77563359 77565921 -124762426 - L1MA3 LINE L1 0 7724 5036 246 32 0 0 chr4 77565921 77565952 -124762395 + (TG)n Simple_repeat Simple_repeat 2 32 0 12182 182 40 17 chr4 77565952 77567234 -124761113 - L1MA3 LINE L1 -2688 5036 3785 286 73 18 18 chr4 77567243 77567298 -124761049 + (TA)n Simple_repeat Simple_repeat 1 55 0 472 194 88 0 chr4 77567298 77567458 -124760889 + L1 LINE L1 3108 3281 -2865 7915 135 52 7 chr4 77567512 77568499 -124759848 - L1MA3 LINE L1 -3802 3763 2681 396 0 0 0 chr4 77568499 77568543 -124759804 + (TG)n Simple_repeat Simple_repeat 2 45 0 7915 135 52 7 chr4 77568543 77569099 -124759248 - L1MA3 LINE L1 -4884 2681 2151 3710 222 43 25 chr4 77569097 77570338 -124758009 - L1MA3 LINE L1 -5941 1624 11 * 357 304 23 5 chr4 77570347 77570564 -124757783 - L1M4 LINE L1 -1549 4597 4377 3968 184 82 37 chr4 77570575 77571607 -124756740 + Charlie1 DNA MER1_type 1679 2757 -4 223 354 35 7 chr4 77571613 77571757 -124756590 - L2 LINE L2 -1039 2275 2128 195 262 294 8 chr4 77571761 77571887 -124756460 + MIR SINE MIR 98 259 -3 404 320 117 22 chr4 77572165 77572387 -124755960 + MIR SINE MIR 20 262 0 183 80 0 0 chr4 77572633 77572658 -124755689 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 264 293 61 49 chr4 77573073 77573237 -124755110 - L2 LINE L2 -21 3292 3127 630 172 0 106 chr4 77574241 77574392 -124753955 + MIR SINE MIR 103 237 -25 308 264 44 0 chr4 77574512 77574603 -124753744 - L1MC4 LINE L1 -1336 6706 6612 279 79 0 0 chr4 77574638 77574676 -124753671 + (A)n Simple_repeat Simple_repeat 1 38 0 59 32 0 0 chr4 77574707 77574770 -124753577 + AT_rich Low_complexity Low_complexity 1 63 0 51 0 0 0 chr4 77574941 77574992 -124753355 + AT_rich Low_complexity Low_complexity 1 51 0 308 305 52 17 chr4 77574992 77575166 -124753181 - L1M4 LINE L1 -2920 3226 3047 43 0 0 0 chr4 77575166 77575209 -124753138 + AT_rich Low_complexity Low_complexity 1 43 0 237 83 0 0 chr4 77575575 77575611 -124752736 + (C)n Simple_repeat Simple_repeat 1 36 0 180 0 0 0 chr4 77575695 77575715 -124752632 + (TA)n Simple_repeat Simple_repeat 1 20 0 399 21 0 0 chr4 77575778 77575826 -124752521 + (TA)n Simple_repeat Simple_repeat 1 48 0 2400 187 63 7 chr4 77577221 77577680 -124750667 + L1MCa LINE L1 5 489 -5937 286 276 39 83 chr4 77578073 77578229 -124750118 - MER5A DNA MER1_type -33 156 8 254 302 0 31 chr4 77578576 77578672 -124749675 + (CAATG)n Simple_repeat Simple_repeat 3 95 0 297 0 0 0 chr4 77578730 77578763 -124749584 + (T)n Simple_repeat Simple_repeat 1 33 0 410 291 99 11 chr4 77579408 77579590 -124748757 - MIR SINE MIR -35 227 30 608 239 8 0 chr4 77580195 77580325 -124748022 + MER94 DNA DNA 2 132 -2 1590 232 113 15 chr4 77580442 77581220 -124747127 + L1ME1 LINE L1 4610 5463 -715 * 1607 228 18 43 chr4 77581219 77581592 -124746755 + L1ME1 LINE L1 5668 6183 -151 1985 81 0 37 chr4 77581592 77581894 -124746453 - AluY SINE Alu 0 309 18 1607 228 18 43 chr4 77581894 77582043 -124746304 + L1ME1 LINE L1 6183 6334 0 595 298 30 18 chr4 77582236 77582542 -124745805 + HERV16 LTR ERVL 1412 1782 -3214 862 310 59 38 chr4 77582561 77583281 -124745066 + HERV16 LTR ERVL 2112 2860 -2136 258 356 39 36 chr4 77583548 77583857 -124744490 - ERVL LTR ERVL -897 4867 4558 260 250 0 15 chr4 77583921 77583989 -124744358 + HERV16 LTR ERVL 4630 4696 -300 416 268 65 0 chr4 77584362 77584500 -124743847 + LTR16A LTR ERVL 108 254 -196 403 326 70 28 chr4 77584554 77584769 -124743578 - L1ME LINE L1 -332 5789 5566 1870 121 3 98 chr4 77584770 77585116 -124743231 - AluSp SINE Alu 0 313 1 2053 202 18 0 chr4 77585508 77585970 -124742377 + MER90 LTR ERV1 1 511 -103 328 175 0 0 chr4 77586124 77586187 -124742160 + MADE1 DNA Mariner 1 63 -17 209 220 0 20 chr4 77586343 77586393 -124741954 + (TATATG)n Simple_repeat Simple_repeat 3 51 0 618 344 41 5 chr4 77587771 77587989 -124740358 + MIR SINE MIR 16 241 -21 554 314 47 21 chr4 77588776 77589012 -124739335 + MIR SINE MIR 17 258 -4 704 223 23 17 chr4 77589235 77589410 -124738937 + MER5B DNA MER1_type 3 178 0 372 284 174 7 chr4 77589418 77589573 -124738774 - MER5A DNA MER1_type 0 189 9 7936 64 18 1 chr4 77590346 77591336 -124737011 - LTR13 LTR ERVK 0 1007 1 11592 237 8 6 chr4 77591336 77594763 -124733584 - HERVK13 LTR ERVK 0 8116 4572 528 236 0 0 chr4 77594783 77594910 -124733437 - HERVK13 LTR ERVK -4003 4113 3987 560 184 44 29 chr4 77594986 77595122 -124733225 - HERVK13 LTR ERVK -6887 1229 1092 366 243 9 0 chr4 77595454 77595561 -124732786 - HERVK13 LTR ERVK -7282 834 727 * 1189 123 29 5 chr4 77595552 77595756 -124732591 - HERVK13 LTR ERVK -7907 209 1 7925 65 16 1 chr4 77595756 77596748 -124731599 - LTR13 LTR ERVK 0 1007 1 197 236 18 36 chr4 77596748 77596803 -124731544 + MIR SINE MIR 22 75 -187 619 268 130 13 chr4 77596972 77597211 -124731136 - MLT1L LTR MaLR -224 391 125 2091 134 3 10 chr4 77597924 77598238 -124730109 - AluSq SINE Alu -1 312 1 2279 105 3 0 chr4 77598679 77598985 -124729362 + AluY SINE Alu 1 307 -4 309 253 88 33 chr4 77599054 77599118 -124729229 + L1MC4 LINE L1 6613 6685 -1357 1077 140 0 0 chr4 77599118 77599296 -124729051 + (TA)n Simple_repeat Simple_repeat 1 178 0 309 253 88 33 chr4 77599296 77599322 -124729025 + L1MC4 LINE L1 6685 6708 -1334 307 333 9 0 chr4 77599747 77599855 -124728492 + MIR SINE MIR 14 122 -140 479 324 28 8 chr4 77600830 77601083 -124727264 + MIR SINE MIR 2 259 -3 361 262 168 13 chr4 77601490 77601639 -124726708 - MIR SINE MIR 0 262 91 271 212 162 0 chr4 77602237 77602336 -124726011 + MER103 DNA DNA 2 116 -50 403 280 0 25 chr4 77602461 77602579 -124725768 + MIR SINE MIR 57 171 -91 1888 190 15 20 chr4 77603502 77603882 -124724465 + MER57A LTR ERV1 1 380 -23 2007 115 14 3 chr4 77603882 77604170 -124724177 + AluSx SINE Alu 3 293 -19 1888 190 15 20 chr4 77604170 77604194 -124724153 + MER57A LTR ERV1 380 403 0 947 221 195 32 chr4 77604517 77604892 -124723455 - MER110 LTR ERV1 -38 453 18 1023 225 66 83 chr4 77605715 77606111 -124722236 - L2 LINE L2 0 3313 2925 2474 168 51 6 chr4 77606256 77606786 -124721561 + L1MA8 LINE L1 5738 6291 0 229 300 183 0 chr4 77608996 77609116 -124719231 - L2 LINE L2 -10 3303 3162 526 308 204 12 chr4 77609211 77609451 -124718896 - L2 LINE L2 -326 2987 2794 209 57 29 0 chr4 77609451 77609486 -124718861 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 526 308 204 12 chr4 77609486 77609625 -124718722 - L2 LINE L2 -519 2794 2523 23 0 0 0 chr4 77610788 77610811 -124717536 + AT_rich Low_complexity Low_complexity 1 23 0 12945 193 27 25 chr4 77610893 77614601 -124713746 + L1PA14 LINE L1 2443 6151 -10 268 167 153 0 chr4 77614666 77614738 -124713609 - L1ME LINE L1 -486 5684 5602 673 326 158 26 chr4 77615005 77615821 -124712526 - L2 LINE L2 -452 2862 1939 5639 37 1 1 chr4 77616290 77616964 -124711383 + L1PA5 LINE L1 5481 6154 0 25 0 0 0 chr4 77617002 77617027 -124711320 + AT_rich Low_complexity Low_complexity 1 25 0 252 328 121 0 chr4 77617542 77617658 -124710689 + L2 LINE L2 3179 3308 -5 196 255 0 20 chr4 77618539 77618590 -124709757 + MIR3 SINE MIR 111 160 -48 188 35 35 0 chr4 77618665 77618694 -124709653 + (TTATA)n Simple_repeat Simple_repeat 2 31 0 387 246 117 6 chr4 77618696 77618875 -124709472 - MER20B DNA MER1_type -64 719 521 3806 259 137 53 chr4 77619254 77620622 -124707725 - L2 LINE L2 -232 3081 1474 1082 178 9 33 chr4 77620622 77620835 -124707512 + MER3 DNA MER1_type 2 209 0 3806 259 137 53 chr4 77620835 77621411 -124706936 - L2 LINE L2 -1839 1474 948 207 0 0 0 chr4 77622394 77622417 -124705930 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2199 105 23 10 chr4 77622730 77623034 -124705313 - AluSg SINE Alu 0 310 3 1759 124 4 11 chr4 77623934 77624207 -124704140 - L1PB3 LINE L1 0 6154 5884 1794 158 30 10 chr4 77624385 77624683 -124703664 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr4 77624724 77624745 -124703602 + AT_rich Low_complexity Low_complexity 1 21 0 340 236 6 32 chr4 77624946 77625103 -124703244 + CT-rich Low_complexity Low_complexity 4 156 0 184 342 66 0 chr4 77625406 77625482 -124702865 - L2 LINE L2 -48 3224 3144 186 339 34 0 chr4 77625697 77625756 -124702591 - L2 LINE L2 -210 3062 3002 180 0 0 0 chr4 77625971 77625991 -124702356 + (TA)n Simple_repeat Simple_repeat 2 21 0 2301 79 3 3 chr4 77625991 77626282 -124702065 - AluY SINE Alu -20 291 1 406 284 47 32 chr4 77626432 77626622 -124701725 + LTR16A LTR ERVL 16 208 -242 493 267 9 17 chr4 77626867 77626983 -124701364 - MIR SINE MIR -136 126 12 422 277 0 0 chr4 77626986 77627123 -124701224 + L1ME3A LINE L1 5809 5945 -225 363 253 87 40 chr4 77627159 77627309 -124701038 + L1ME3A LINE L1 5925 6081 -89 2338 115 0 3 chr4 77627378 77627691 -124700656 - AluSq SINE Alu -1 312 1 205 355 109 14 chr4 77628703 77628841 -124699506 - L2 LINE L2 0 3272 3122 289 309 98 8 chr4 77631169 77631292 -124697055 - MIR3 SINE MIR -7 201 68 255 298 8 58 chr4 77631382 77631503 -124696844 - L2 LINE L2 -4 3309 3195 27 62 0 0 chr4 77631847 77631895 -124696452 + AT_rich Low_complexity Low_complexity 1 48 0 263 250 0 15 chr4 77633480 77633548 -124694799 + GA-rich Low_complexity Low_complexity 4 70 0 189 193 18 88 chr4 77634066 77634123 -124694224 - L2 LINE L2 -84 3229 3177 3438 135 14 8 chr4 77634464 77634984 -124693363 + MER1A DNA MER1_type 5 527 0 1295 226 113 15 chr4 77635182 77635518 -124692829 - MER4B-int LTR ERV1 -2844 3914 3546 290 357 117 24 chr4 77635735 77635948 -124692399 - MIR SINE MIR -10 252 20 29 60 0 0 chr4 77636310 77636360 -124691987 + AT_rich Low_complexity Low_complexity 1 50 0 507 123 0 0 chr4 77636733 77636814 -124691533 + (TTCC)n Simple_repeat Simple_repeat 1 81 0 493 326 69 13 chr4 77636940 77637173 -124691174 - MIR SINE MIR -12 250 5 577 299 48 0 chr4 77637264 77637471 -124690876 - MIR SINE MIR -41 221 5 1949 122 0 7 chr4 77637663 77637968 -124690379 - AluSx SINE Alu 0 309 7 324 233 39 29 chr4 77638308 77638411 -124689936 - L2 LINE L2 -945 2369 2266 180 97 0 0 chr4 77638425 77638456 -124689891 + (CATA)n Simple_repeat Simple_repeat 2 32 0 191 300 130 30 chr4 77638502 77638602 -124689745 + MIR SINE MIR 37 146 -62 723 239 46 148 chr4 77638603 77639102 -124689245 - L2 LINE L2 -5 3308 2861 990 277 158 15 chr4 77639127 77639582 -124688765 - L2 LINE L2 -840 2474 1955 22 35 0 0 chr4 77639696 77639725 -124688622 + AT_rich Low_complexity Low_complexity 1 29 0 31 76 0 0 chr4 77640029 77640095 -124688252 + AT_rich Low_complexity Low_complexity 1 66 0 180 326 35 0 chr4 77640223 77640309 -124688038 - MIR SINE MIR -11 251 163 215 377 8 23 chr4 77641053 77641183 -124687164 + L2 LINE L2 3159 3286 -27 370 325 17 8 chr4 77641393 77641510 -124686837 + L2 LINE L2 3147 3264 -8 21 71 0 0 chr4 77642009 77642051 -124686296 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr4 77642302 77642327 -124686020 + AT_rich Low_complexity Low_complexity 1 25 0 198 281 24 37 chr4 77642582 77642664 -124685683 + MIR SINE MIR 176 256 -6 201 274 0 0 chr4 77642940 77642991 -124685356 + GA-rich Low_complexity Low_complexity 2 52 0 249 233 54 93 chr4 77643557 77643686 -124684661 + MIR SINE MIR 23 146 -116 529 242 8 31 chr4 77643686 77643814 -124684533 + LTR16A1 LTR ERVL 1 125 -332 271 171 73 49 chr4 77643880 77643962 -124684385 + MIR SINE MIR 130 213 -49 1565 170 16 55 chr4 77644006 77644317 -124684030 + AluJb SINE Alu 3 301 -11 270 299 136 23 chr4 77644752 77644966 -124683381 - MIR SINE MIR -14 248 11 464 356 44 13 chr4 77645243 77645468 -124682879 - MIR SINE MIR -11 251 20 405 252 64 45 chr4 77647101 77647268 -124681079 - MIR3 SINE MIR -26 182 13 185 306 16 0 chr4 77647743 77647805 -124680542 + MIR3 SINE MIR 132 194 -14 2392 123 8 16 chr4 77647823 77648190 -124680157 - THE1B LTR MaLR 0 364 1 969 240 27 0 chr4 77648597 77648818 -124679529 + MIR SINE MIR 14 240 -22 592 229 0 0 chr4 77649407 77649529 -124678818 - L1PB4 LINE L1 0 6156 6035 242 273 9 91 chr4 77649614 77649724 -124678623 - L2 LINE L2 -43 3229 3129 597 184 19 0 chr4 77650879 77650982 -124677365 - 7SLRNA srpRNA srpRNA -11 309 205 1234 173 0 5 chr4 77651143 77651334 -124677013 - 7SLRNA srpRNA srpRNA -130 190 1 270 306 0 0 chr4 77651398 77651460 -124676887 + L2 LINE L2 3252 3313 0 645 254 16 16 chr4 77653378 77653567 -124674780 + MER5A DNA MER1_type 1 189 0 341 218 177 0 chr4 77654258 77654382 -124673965 + L1ME4a LINE L1 5946 6091 -30 594 103 0 0 chr4 77654421 77654508 -124673839 + (GGAA)n Simple_repeat Simple_repeat 4 90 0 259 264 161 32 chr4 77655262 77655417 -124672930 - MIR SINE MIR -42 220 46 576 231 15 0 chr4 77655431 77655561 -124672786 + L1MB3 LINE L1 6051 6182 -1 477 0 0 0 chr4 77655850 77655903 -124672444 + (CA)n Simple_repeat Simple_repeat 2 54 0 1989 164 0 0 chr4 77656079 77656391 -124671956 - AluSx SINE Alu 0 312 1 474 279 65 60 chr4 77657657 77657872 -124670475 + MIR SINE MIR 21 236 -26 1302 283 100 23 chr4 77658030 77658857 -124669490 + L2 LINE L2 2388 3272 0 270 213 49 0 chr4 77659409 77659470 -124668877 - MIR3 SINE MIR -51 157 94 520 269 54 21 chr4 77659630 77659816 -124668531 + MIR SINE MIR 23 214 -48 413 339 31 0 chr4 77661686 77661816 -124666531 - L2 LINE L2 -5 3267 3134 22 80 0 0 chr4 77662103 77662153 -124666194 + AT_rich Low_complexity Low_complexity 1 50 0 1839 128 48 3 chr4 77662508 77662797 -124665550 - AluJb SINE Alu -2 310 9 23 0 0 0 chr4 77662806 77662829 -124665518 + AT_rich Low_complexity Low_complexity 1 23 0 587 308 45 27 chr4 77663252 77663476 -124664871 - MIR SINE MIR -11 251 24 2347 72 0 3 chr4 77664284 77664588 -124663759 - AluY SINE Alu -8 303 1 29 28 0 0 chr4 77667261 77667297 -124661050 + AT_rich Low_complexity Low_complexity 1 36 0 183 289 0 22 chr4 77668676 77668721 -124659626 - L2 LINE L2 -51 3262 3219 26 0 0 0 chr4 77668961 77668987 -124659360 + AT_rich Low_complexity Low_complexity 1 26 0 306 300 67 0 chr4 77669128 77669248 -124659099 - MER94 DNA DNA -6 128 1 23 0 0 0 chr4 77669348 77669371 -124658976 + AT_rich Low_complexity Low_complexity 1 23 0 511 178 76 8 chr4 77669488 77669606 -124658741 - MER53 DNA DNA 0 189 64 316 167 0 0 chr4 77669803 77669857 -124658490 - MER53 DNA DNA -135 54 1 218 205 13 103 chr4 77669893 77669971 -124658376 + MIR SINE MIR 113 183 -79 21 36 0 0 chr4 77670137 77670165 -124658182 + AT_rich Low_complexity Low_complexity 1 28 0 427 198 11 0 chr4 77670192 77670283 -124658064 + MER53 DNA DNA 1 92 -97 683 298 26 26 chr4 77671053 77671405 -124656942 + L1MEd LINE L1 894 1245 -4874 11607 29 1 0 chr4 77671530 77673681 -124654666 - L1PA3 LINE L1 -3 6152 4000 302 280 58 39 chr4 77673731 77673938 -124654409 - L1MEc LINE L1 -4581 1815 1605 706 299 30 37 chr4 77673940 77674232 -124654115 + L1MEd LINE L1 2399 2687 -3442 689 246 6 33 chr4 77674232 77674415 -124653932 - MER45A DNA AcHobo 0 178 1 706 299 30 37 chr4 77674415 77674683 -124653664 + L1MEd LINE L1 2687 2955 -3174 1818 206 103 36 chr4 77674683 77675150 -124653197 + MLT1D LTR MaLR 1 498 -7 321 219 47 70 chr4 77675221 77675349 -124652998 + L1MEd LINE L1 3093 3217 -2912 322 306 131 31 chr4 77675721 77676240 -124652107 + L1MEd LINE L1 3846 4416 -1713 935 183 0 0 chr4 77676305 77676480 -124651867 + L1P LINE L1 5027 5201 -945 1121 118 0 0 chr4 77676480 77676649 -124651698 + L1PA13 LINE L1 5992 6161 -2 466 247 61 26 chr4 77676652 77676883 -124651464 + L1MEd LINE L1 4466 4704 -1425 1508 198 32 41 chr4 77677667 77678010 -124650337 + MER65C LTR ERV1 3 342 -119 25 0 0 0 chr4 77678064 77678089 -124650258 + AT_rich Low_complexity Low_complexity 1 25 0 207 283 92 75 chr4 77678201 77678374 -124649973 - L2 LINE L2 -261 3011 2836 245 268 0 0 chr4 77678994 77679065 -124649282 + (TA)n Simple_repeat Simple_repeat 1 71 0 23 78 0 0 chr4 77679367 77679418 -124648929 + AT_rich Low_complexity Low_complexity 1 51 0 225 192 19 0 chr4 77680957 77681009 -124647338 - L1MA5 LINE L1 -3 6297 6245 3011 155 43 40 chr4 77681208 77681841 -124646506 + L1MC3 LINE L1 6374 7008 -777 186 103 0 0 chr4 77681849 77681878 -124646469 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 324 289 9 18 chr4 77681919 77682033 -124646314 + MLT1F1 LTR MaLR 13 125 -442 2005 157 37 0 chr4 77682033 77682516 -124645831 + L1MC3 LINE L1 7189 7779 -6 22 0 0 0 chr4 77683922 77683944 -124644403 + AT_rich Low_complexity Low_complexity 1 22 0 195 100 0 0 chr4 77683948 77683978 -124644369 + (TCTA)n Simple_repeat Simple_repeat 3 32 0 2165 147 18 10 chr4 77684020 77684408 -124643939 - L1MB3 LINE L1 -10 6173 5783 313 173 0 48 chr4 77684495 77684599 -124643748 + (TA)n Simple_repeat Simple_repeat 1 99 0 468 226 11 22 chr4 77684619 77684800 -124643547 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 2412 171 25 75 chr4 77684801 77685551 -124642796 - L1MB3 LINE L1 -390 5793 5096 192 77 0 0 chr4 77686752 77686778 -124641569 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 2168 149 26 90 chr4 77687349 77687390 -124640957 + MSTC LTR MaLR 1 43 -385 2228 111 0 13 chr4 77687390 77687706 -124640641 + AluSq SINE Alu 1 312 -1 2168 149 26 90 chr4 77687706 77687780 -124640567 + MSTC LTR MaLR 43 120 -308 2059 141 3 0 chr4 77687780 77688086 -124640261 + AluSx SINE Alu 1 307 -5 2168 149 26 90 chr4 77688086 77688426 -124639921 + MSTC LTR MaLR 120 428 0 2136 228 72 32 chr4 77688468 77689153 -124639194 + L1ME3A LINE L1 5451 6162 -8 1278 296 31 13 chr4 77689357 77689810 -124638537 - LTR16B LTR ERVL -3 461 1 448 261 48 48 chr4 77689858 77690023 -124638324 + MER63A DNA MER1_type 45 209 -1 1792 233 98 72 chr4 77690154 77691068 -124637279 + LTR1B LTR ERV1 1 1020 0 254 181 0 83 chr4 77691071 77691143 -124637204 + LTR1B-int LTR ERV1 6 71 -7020 1290 236 86 31 chr4 77691185 77691571 -124636776 + LTR1B-int LTR ERV1 181 587 -6504 1886 193 47 34 chr4 77691571 77692107 -124636240 - MLT2A2 LTR ERVL 0 554 1 27344 100 13 3 chr4 77692107 77695820 -124632527 - HERVL-A2 LTR ERVL 0 5654 1903 6994 184 23 34 chr4 77695809 77697222 -124631125 + LTR1B-int LTR ERV1 1691 3088 0 * 1283 242 91 104 chr4 77697222 77698173 -124630174 + LTR1B LTR ERV1 1 1020 0 274 136 23 0 chr4 77698439 77698483 -124629864 - 5S rRNA rRNA -75 46 2 23 0 0 0 chr4 77698492 77698515 -124629832 + AT_rich Low_complexity Low_complexity 1 23 0 180 244 122 0 chr4 77698823 77698864 -124629483 - L2 LINE L2 -18 3295 3250 295 152 15 61 chr4 77699217 77699283 -124629064 + MLT1B LTR MaLR 7 69 -321 553 147 73 15 chr4 77699892 77700028 -124628319 - L1MD3 LINE L1 0 7995 7852 1478 190 35 7 chr4 77700056 77700345 -124628002 - AluJo SINE Alu -15 297 1 1047 178 119 16 chr4 77700347 77700491 -124627856 - L1MD3 LINE L1 -303 7692 7564 7763 61 14 9 chr4 77700491 77701493 -124626854 - LTR13 LTR ERVK 0 1007 1 1047 178 119 16 chr4 77701493 77701601 -124626746 - L1MD3 LINE L1 -431 7564 7414 432 214 165 0 chr4 77701610 77701713 -124626634 - MLT1F1 LTR MaLR -442 125 6 286 95 0 0 chr4 77701716 77701758 -124626589 - L1MD3 LINE L1 -715 7280 7239 654 273 118 46 chr4 77701853 77702091 -124626256 - MIR SINE MIR -1 261 7 722 271 137 17 chr4 77702342 77702759 -124625588 + L1ME LINE L1 5257 5723 -447 22 88 0 0 chr4 77704380 77704437 -124623910 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr4 77704533 77704555 -124623792 + AT_rich Low_complexity Low_complexity 1 22 0 1556 239 105 17 chr4 77704966 77705501 -124622846 - L1ME1 LINE L1 -12 6154 5573 285 252 19 28 chr4 77705505 77705612 -124622735 + L1MA5 LINE L1 2900 3005 -3141 1995 119 6 66 chr4 77705617 77705937 -124622410 - AluSx SINE Alu -11 301 1 3806 218 77 63 chr4 77705938 77706287 -124622060 - MER109 Unknown Unknown -829 1603 1260 2236 99 10 26 chr4 77706287 77706600 -124621747 + AluSp SINE Alu 1 308 -5 3806 218 77 63 chr4 77706600 77708348 -124619999 - MER109 Unknown Unknown -1172 1260 338 2088 131 21 21 chr4 77708348 77708723 -124619624 - THE1C LTR MaLR 0 375 1 3806 218 77 63 chr4 77708723 77709066 -124619281 - MER109 Unknown Unknown -2094 338 1 1971 126 20 0 chr4 77709368 77709661 -124618686 - AluSx SINE Alu -12 300 2 10138 174 38 24 chr4 77709970 77712253 -124616094 + L1MA5 LINE L1 2982 5338 -962 2466 63 0 3 chr4 77712253 77712554 -124615793 + AluY SINE Alu 1 300 -11 10138 174 38 24 chr4 77712554 77713527 -124614820 + L1MA5 LINE L1 5338 6296 -4 1728 254 32 14 chr4 77713536 77714274 -124614073 - L1ME1 LINE L1 -577 5589 4835 264 346 13 0 chr4 77714284 77714362 -124613985 + MIR SINE MIR 12 90 -172 259 326 33 11 chr4 77714421 77714513 -124613834 - MIR SINE MIR -87 121 28 21 0 0 0 chr4 77715163 77715184 -124613163 + AT_rich Low_complexity Low_complexity 1 21 0 231 146 0 0 chr4 77715793 77715834 -124612513 + (GGA)n Simple_repeat Simple_repeat 3 43 0 1200 187 50 8 chr4 77716362 77716624 -124611723 + L1MB3 LINE L1 5792 6064 -119 264 269 56 46 chr4 77717081 77717189 -124611158 - MIR SINE MIR -6 256 148 2587 181 16 12 chr4 77717240 77717736 -124610611 - L1MB3 LINE L1 0 6183 5686 946 201 57 0 chr4 77717787 77718016 -124610331 + L1MA4 LINE L1 6052 6293 -7 330 299 96 24 chr4 77718256 77718423 -124609924 - HAL1 LINE L1 -8 2499 2321 1390 273 117 20 chr4 77718808 77719575 -124608772 - HAL1 LINE L1 -726 1781 940 680 210 12 18 chr4 77719593 77719760 -124608587 - L1MC3 LINE L1 -20 7765 7600 295 163 0 0 chr4 77719767 77719816 -124608531 - L1MC3 LINE L1 -350 7435 7387 * 4595 100 0 21 chr4 77719812 77720493 -124607854 - L1PA7 LINE L1 -3648 2498 1832 19285 100 7 2 chr4 77720493 77724127 -124604220 + L1PA7 LINE L1 2500 6151 -3 2579 52 0 0 chr4 77724137 77724442 -124603905 - AluY SINE Alu -5 306 2 561 227 0 86 chr4 77724507 77724670 -124603677 - L1MC3 LINE L1 -388 7397 7249 3115 188 172 49 chr4 77724695 77725653 -124602694 - L1MC3 LINE L1 -745 5401 5501 2495 67 0 16 chr4 77725653 77725969 -124602378 - AluY SINE Alu 0 311 1 3115 188 172 49 chr4 77725969 77726273 -124602074 - L1MC3 LINE L1 -644 5502 5237 1858 272 63 8 chr4 77726772 77727851 -124600496 + L1M3e LINE L1 1 2392 -4645 391 218 167 0 chr4 77727869 77728043 -124600304 + L1M3e LINE L1 3700 3902 -3204 42 77 0 0 chr4 77728054 77728145 -124600202 + AT_rich Low_complexity Low_complexity 1 91 0 511 228 102 44 chr4 77728146 77728221 -124600126 + L1M3e LINE L1 3878 3947 -3159 2160 116 10 0 chr4 77728221 77728522 -124599825 + AluSx SINE Alu 1 304 -8 511 228 102 44 chr4 77728522 77728570 -124599777 + L1M3e LINE L1 3947 3991 -3115 2084 136 0 0 chr4 77728570 77728865 -124599482 + AluSq SINE Alu 1 295 -18 511 228 102 44 chr4 77728865 77729082 -124599265 + L1M3e LINE L1 3991 4239 -2867 9744 266 25 33 chr4 77729083 77732132 -124596215 + L1PA15 LINE L1 65 3603 -3981 2242 115 0 0 chr4 77732132 77732428 -124595919 + AluSc SINE Alu 1 296 -13 9744 266 25 33 chr4 77732428 77734434 -124593913 + L1PA15 LINE L1 3603 5623 -1961 5034 155 19 13 chr4 77734434 77735966 -124592381 + L1PA15 LINE L1 6069 7601 -2 5148 212 42 3 chr4 77735984 77737238 -124591109 + L1M3e LINE L1 4202 5503 -1603 26 50 0 0 chr4 77737533 77737573 -124590774 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 77738078 77738099 -124590248 + AT_rich Low_complexity Low_complexity 1 21 0 437 202 29 0 chr4 77738414 77738518 -124589829 + LTR37B LTR ERV1 199 305 -163 360 0 0 0 chr4 77738557 77738597 -124589750 + (CA)n Simple_repeat Simple_repeat 2 41 0 291 28 0 0 chr4 77738596 77738632 -124589715 + (TC)n Simple_repeat Simple_repeat 2 37 0 * 370 319 115 0 chr4 77739237 77739350 -124588997 + MLT1K LTR MaLR 90 215 -373 31 26 0 0 chr4 77739938 77739976 -124588371 + AT_rich Low_complexity Low_complexity 1 38 0 315 329 7 36 chr4 77740124 77740261 -124588086 - L2 LINE L2 -1 3271 3139 204 40 0 0 chr4 77740273 77740298 -124588049 + (CA)n Simple_repeat Simple_repeat 1 25 0 284 315 113 48 chr4 77740502 77740954 -124587393 - L2 LINE L2 -217 3055 2551 462 225 51 43 chr4 77741035 77741173 -124587174 - MER5B DNA MER1_type -19 159 21 1528 327 43 22 chr4 77741203 77741872 -124586475 + L2 LINE L2 2150 2832 -482 414 329 40 0 chr4 77742101 77742250 -124586097 + L2 LINE L2 3159 3313 0 28 29 0 0 chr4 77742970 77743005 -124585342 + AT_rich Low_complexity Low_complexity 1 35 0 2260 116 45 17 chr4 77743702 77744056 -124584291 + THE1B LTR MaLR 1 364 0 224 160 0 40 chr4 77745290 77745340 -124583007 + GA-rich Low_complexity Low_complexity 5 52 0 2627 159 8 2 chr4 77745905 77746389 -124581958 + L1MA3 LINE L1 5819 6305 0 516 296 53 73 chr4 77747648 77747949 -124580398 + LTR67 LTR ERVL 244 538 -19 244 295 105 9 chr4 77748183 77748288 -124580059 + MIR SINE MIR 67 181 -81 732 340 42 23 chr4 77748489 77748874 -124579473 + L2 LINE L2 2220 2611 -703 685 299 33 14 chr4 77748875 77749086 -124579261 - MER58A DNA MER1_type 0 224 10 2307 119 0 0 chr4 77749132 77749443 -124578904 - AluSx SINE Alu -1 311 1 557 329 84 30 chr4 77749524 77750064 -124578283 + L2 LINE L2 2702 3266 -47 317 174 14 0 chr4 77750206 77750275 -124578072 + GA-rich Low_complexity Low_complexity 2 71 0 1601 155 52 85 chr4 77750449 77750837 -124577510 - THE1C LTR MaLR 0 375 1 194 91 30 0 chr4 77750853 77750886 -124577461 + (TTA)n Simple_repeat Simple_repeat 3 36 0 386 258 16 65 chr4 77750995 77751119 -124577228 - MER5A DNA MER1_type -1 188 71 3262 200 66 43 chr4 77751125 77752600 -124575747 - L1MB7 LINE L1 -16 6168 4656 183 80 0 0 chr4 77753251 77753276 -124575071 + (ATTG)n Simple_repeat Simple_repeat 1 25 0 6589 158 15 3 chr4 77753768 77754854 -124573493 - Tigger1 DNA MER2_type 0 2418 1320 588 268 77 9 chr4 77754854 77755074 -124573273 + L1ME LINE L1 5329 5563 -601 666 77 48 29 chr4 77755079 77755183 -124573164 + Tigger1 DNA MER2_type 1224 1329 -1089 1664 282 45 13 chr4 77755183 77755963 -124572384 - L1M4 LINE L1 -1266 4880 4076 735 257 73 17 chr4 77755979 77756337 -124572010 - L1M4 LINE L1 -3524 2622 2245 282 56 0 0 chr4 77757415 77757451 -124570896 + (TA)n Simple_repeat Simple_repeat 2 37 0 9437 30 4 1 chr4 77761518 77763425 -124564922 - L1PA3 LINE L1 -3 6152 4242 1860 44 0 0 chr4 77763425 77763653 -124564694 - L1P LINE L1 -1786 4360 4133 316 315 118 42 chr4 77766215 77766614 -124561733 + L2 LINE L2 2630 3054 -218 348 298 96 11 chr4 77767186 77767280 -124561067 + L2 LINE L2 3136 3237 -35 44 46 0 0 chr4 77767534 77767599 -124560748 + AT_rich Low_complexity Low_complexity 1 65 0 1580 118 9 4 chr4 77767986 77768214 -124560133 - AluSg/x SINE Alu -5 307 79 282 29 0 0 chr4 77768220 77768255 -124560092 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1507 83 10 0 chr4 77769227 77769419 -124558928 - AluY SINE Alu -9 302 109 354 276 112 8 chr4 77769540 77769674 -124558673 + MIR SINE MIR 23 170 -92 188 189 54 0 chr4 77769736 77769773 -124558574 - MIR3 SINE MIR -50 158 120 192 179 0 0 chr4 77770142 77770181 -124558166 + G-rich Low_complexity Low_complexity 5 43 0 227 227 15 0 chr4 77770249 77770315 -124558032 + CT-rich Low_complexity Low_complexity 5 71 0 225 326 45 11 chr4 77770369 77770458 -124557889 + MLT1H LTR MaLR 308 399 -196 249 262 52 43 chr4 77770490 77770610 -124557737 + MLT1H LTR MaLR 428 589 -4 265 196 20 0 chr4 77771715 77771766 -124556581 + L2 LINE L2 3261 3312 -1 255 297 14 0 chr4 77772711 77772785 -124555562 + CT-rich Low_complexity Low_complexity 4 78 0 231 241 0 0 chr4 77772844 77772898 -124555449 + MLT1G3 LTR MaLR 249 302 -228 2213 98 3 7 chr4 77773549 77773845 -124554502 - AluSc SINE Alu -1 308 14 350 100 0 0 chr4 77774000 77774085 -124554262 - AluSp/q SINE Alu 0 319 235 321 294 59 17 chr4 77775471 77775590 -124552757 - MIR SINE MIR -20 242 119 180 306 0 0 chr4 77776556 77776605 -124551742 + L2 LINE L2 3256 3304 -9 186 297 0 31 chr4 77776868 77776932 -124551415 - MIR SINE MIR -148 114 53 22 35 0 0 chr4 77777229 77777258 -124551089 + AT_rich Low_complexity Low_complexity 1 29 0 6465 163 38 6 chr4 77777739 77778932 -124549415 - Tigger3b DNA MER2_type 0 1231 1 204 361 0 0 chr4 77778951 77779012 -124549335 - L2 LINE L2 -98 3174 3114 246 211 70 0 chr4 77779250 77779321 -124549026 - L1MC4 LINE L1 -1351 6691 6616 286 292 26 9 chr4 77779389 77779502 -124548845 - L2 LINE L2 -218 3054 2940 201 222 0 0 chr4 77781072 77781108 -124547239 + C-rich Low_complexity Low_complexity 6 41 0 1723 205 83 35 chr4 77781997 77782383 -124545964 - MLT1D LTR MaLR -2 503 88 198 0 0 0 chr4 77782383 77782405 -124545942 + (TA)n Simple_repeat Simple_repeat 2 23 0 1723 205 83 35 chr4 77782405 77782497 -124545850 - MLT1D LTR MaLR -417 88 2 412 293 33 33 chr4 77783261 77783411 -124544936 + MIR SINE MIR 100 249 -13 23 0 0 0 chr4 77783502 77783525 -124544822 + AT_rich Low_complexity Low_complexity 1 23 0 1330 128 98 0 chr4 77783553 77783756 -124544591 - AluSx SINE Alu -89 223 1 1072 137 49 33 chr4 77784094 77784277 -124544070 - MSTB LTR MaLR 0 426 241 3028 96 0 2 chr4 77784279 77784684 -124543663 + MLT2A1 LTR ERVL 1 404 -40 358 53 0 53 chr4 77784848 77784861 -124543486 + MLT2A1 LTR ERVL 391 403 -41 291 54 0 0 chr4 77784861 77784898 -124543449 + (CA)n Simple_repeat Simple_repeat 2 38 0 358 53 0 53 chr4 77784898 77784941 -124543406 + MLT2A1 LTR ERVL 403 444 0 1297 180 34 9 chr4 77784945 77785178 -124543169 - MSTB LTR MaLR -187 239 1 216 135 0 0 chr4 77785923 77785960 -124542387 + (TATG)n Simple_repeat Simple_repeat 2 38 0 424 261 50 70 chr4 77785979 77786178 -124542169 + MER112 DNA MER1_type 66 260 0 327 231 246 0 chr4 77786666 77786796 -124541551 + MIR SINE MIR 28 189 -73 190 378 78 0 chr4 77787527 77787617 -124540730 + L2 LINE L2 3168 3264 -8 23 0 0 0 chr4 77788535 77788558 -124539789 + AT_rich Low_complexity Low_complexity 1 23 0 2131 105 3 7 chr4 77788670 77788998 -124539349 + AluSp SINE Alu 1 327 0 188 231 0 77 chr4 77789806 77789858 -124538489 - L2 LINE L2 0 3313 3266 182 292 21 0 chr4 77789826 77789874 -124538473 - MIR SINE MIR -10 252 204 * 203 387 147 5 chr4 77790038 77790229 -124538118 - L2 LINE L2 -61 3211 2994 825 318 65 45 chr4 77790751 77791153 -124537194 - MLT1K LTR MaLR -1 587 178 269 261 15 15 chr4 77791659 77791724 -124536623 - LTR16C LTR ERVL -165 326 262 28 61 0 0 chr4 77792694 77792743 -124535604 + AT_rich Low_complexity Low_complexity 1 49 0 2366 234 29 5 chr4 77792743 77793299 -124535048 - L1MD3 LINE L1 -16 7979 7411 480 186 38 158 chr4 77793575 77793758 -124534589 + MIR SINE MIR 82 242 -20 504 0 0 0 chr4 77795007 77795063 -124533284 + (TA)n Simple_repeat Simple_repeat 1 56 0 183 232 137 53 chr4 77795128 77795223 -124533124 - MIR SINE MIR -5 257 155 308 279 101 133 chr4 77796523 77797155 -124531192 + L1M2 LINE L1 796 1407 -5442 214 175 18 35 chr4 77798169 77798226 -124530121 - L2 LINE L2 -16 3256 3201 544 258 102 18 chr4 77799885 77800052 -124528295 + MIR SINE MIR 10 190 -72 25 0 0 0 chr4 77800906 77800931 -124527416 + AT_rich Low_complexity Low_complexity 1 25 0 1354 328 38 26 chr4 77800949 77801912 -124526435 - L1MEc LINE L1 -5388 1008 34 680 295 30 13 chr4 77801914 77802148 -124526199 + LTR16C LTR ERVL 254 491 0 222 387 27 9 chr4 77802814 77802925 -124525422 - MIR SINE MIR -56 152 40 228 193 46 138 chr4 77803196 77803305 -124525042 - MLT1H LTR MaLR -33 516 418 588 278 31 32 chr4 77803392 77803630 -124524717 - MLT1H LTR MaLR -293 256 2 22 0 0 0 chr4 77803796 77803818 -124524529 + AT_rich Low_complexity Low_complexity 1 22 0 437 111 0 111 chr4 77804214 77804313 -124524034 - L1PA10 LINE L1 0 6168 6081 241 345 91 86 chr4 77804508 77804859 -124523488 + L2 LINE L2 2897 3249 -23 1612 182 19 73 chr4 77804954 77805366 -124522981 + MLT1B LTR MaLR 1 390 0 387 277 96 12 chr4 77805597 77805763 -124522584 + L1MEc LINE L1 62 241 -6155 5733 99 14 9 chr4 77805832 77807741 -124520606 - L1PA13 LINE L1 -3 6160 4217 21 0 0 0 chr4 77809647 77809668 -124518679 + AT_rich Low_complexity Low_complexity 1 21 0 924 242 67 17 chr4 77809690 77809943 -124518404 - MLT1E2 LTR MaLR 0 603 354 478 322 93 58 chr4 77810949 77812134 -124516213 + L1MEc LINE L1 118 1343 -4862 310 316 88 22 chr4 77812719 77812855 -124515492 + MIR SINE MIR 55 199 -63 297 382 15 15 chr4 77813148 77813279 -124515068 - MIR SINE MIR -62 146 16 24 53 0 0 chr4 77813935 77813973 -124514374 + AT_rich Low_complexity Low_complexity 1 38 0 294 328 60 9 chr4 77814049 77814281 -124514066 - L1 LINE L1 -1133 5013 4770 1176 134 10 10 chr4 77814306 77814500 -124513847 + L1PB1 LINE L1 5958 6151 0 296 277 30 30 chr4 77814575 77814741 -124513606 - L1 LINE L1 -1442 4704 4539 472 333 62 43 chr4 77814827 77815265 -124513082 - L1 LINE L1 -1678 4468 4023 26 0 0 0 chr4 77815881 77815907 -124512440 + AT_rich Low_complexity Low_complexity 1 26 0 670 290 53 37 chr4 77816471 77816716 -124511631 + MIR SINE MIR 14 262 0 3470 165 75 46 chr4 77817302 77817769 -124510578 - L1MA9 LINE L1 -5 6307 5806 324 0 0 0 chr4 77817769 77817805 -124510542 + (TG)n Simple_repeat Simple_repeat 1 36 0 3470 165 75 46 chr4 77817805 77818135 -124510212 - L1MA9 LINE L1 -506 5806 5487 180 200 25 0 chr4 77818147 77818187 -124510160 + MER5A DNA MER1_type 143 183 -6 253 226 36 36 chr4 77818291 77818375 -124509972 - L1MEd LINE L1 -6033 86 3 2356 132 14 16 chr4 77818513 77818878 -124509469 - THE1B LTR MaLR 0 364 1 1807 150 3 21 chr4 77818914 77819223 -124509124 - AluSx SINE Alu 0 304 1 487 249 29 29 chr4 77819881 77820054 -124508293 - MER104 DNA Tc2 -7 173 1 26 0 0 0 chr4 77821387 77821413 -124506934 + AT_rich Low_complexity Low_complexity 1 26 0 4138 152 20 18 chr4 77822219 77822925 -124505422 + MER50 LTR ERV1 1 707 -27 1819 153 41 3 chr4 77824098 77824393 -124503954 - AluJb SINE Alu -6 306 1 637 135 0 68 chr4 77824393 77824526 -124503821 + Charlie1 DNA MER1_type 2637 2760 -1 767 211 95 11 chr4 77824534 77824724 -124503623 + MER3 DNA MER1_type 1 206 -3 438 313 50 34 chr4 77825543 77825722 -124502625 + MIR SINE MIR 79 260 -2 224 119 60 60 chr4 77825735 77825819 -124502528 + (TTATA)n Simple_repeat Simple_repeat 4 87 0 32 57 0 0 chr4 77825869 77825922 -124502425 + AT_rich Low_complexity Low_complexity 1 53 0 268 245 149 11 chr4 77825949 77826043 -124502304 - L2 LINE L2 -30 3242 3136 505 256 155 29 chr4 77826238 77826445 -124501902 - MLT1J1 LTR MaLR -29 417 185 2581 114 17 0 chr4 77827055 77827413 -124500934 + THE1B LTR MaLR 1 364 0 672 301 20 24 chr4 77827670 77827916 -124500431 + MIR SINE MIR 8 252 -10 333 0 0 0 chr4 77827917 77827954 -124500393 + (CA)n Simple_repeat Simple_repeat 2 38 0 189 0 0 0 chr4 77827953 77827974 -124500373 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 471 279 43 7 chr4 77828104 77828244 -124500103 + MIR SINE MIR 99 243 -19 393 356 77 22 chr4 77828354 77828576 -124499771 + MIR SINE MIR 20 253 -9 381 332 98 53 chr4 77829113 77829223 -124499124 + MIR SINE MIR 6 110 -152 2154 104 7 10 chr4 77829223 77829522 -124498825 + AluSx SINE Alu 1 298 -14 381 332 98 53 chr4 77829522 77829655 -124498692 + MIR SINE MIR 110 260 -2 2160 157 100 29 chr4 77830281 77830733 -124497614 + MER31A LTR ERV1 2 485 0 413 252 37 0 chr4 77831155 77831262 -124497085 - MIR SINE MIR -76 186 76 180 0 0 0 chr4 77831367 77831387 -124496960 + (TG)n Simple_repeat Simple_repeat 1 20 0 561 178 0 0 chr4 77831972 77832062 -124496285 - 5S rRNA rRNA -31 90 1 10397 30 2 1 chr4 77832410 77834416 -124493931 - L1PA3 LINE L1 -3 6152 4145 241 306 65 0 chr4 77834595 77834657 -124493690 - MIR SINE MIR -102 106 41 24 0 0 0 chr4 77835771 77835795 -124492552 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr4 77836003 77836035 -124492312 + AT_rich Low_complexity Low_complexity 1 32 0 773 236 28 6 chr4 77836286 77836468 -124491879 + MIR SINE MIR 74 259 -3 50 42 0 0 chr4 77836471 77836542 -124491805 + AT_rich Low_complexity Low_complexity 1 71 0 7472 31 5 0 chr4 77836856 77837947 -124490400 + L1PA4 LINE L1 5060 6154 -1 319 344 85 0 chr4 77838279 77838468 -124489879 + MIR SINE MIR 52 256 -6 354 325 87 0 chr4 77838539 77838665 -124489682 - MIR SINE MIR 0 262 126 1254 125 0 0 chr4 77838839 77839039 -124489308 + L1MA6 LINE L1 6093 6292 -8 246 32 0 0 chr4 77840497 77840528 -124487819 + (TG)n Simple_repeat Simple_repeat 2 32 0 1077 217 9 5 chr4 77841880 77842097 -124486250 - MER20 DNA MER1_type 0 219 2 441 0 0 0 chr4 77843149 77843198 -124485149 + (TA)n Simple_repeat Simple_repeat 1 49 0 516 325 19 0 chr4 77843377 77843531 -124484816 + ERVL LTR ERVL 4908 5064 -700 479 364 44 36 chr4 77844054 77844444 -124483903 + LTR16C LTR ERVL 99 491 0 23 0 0 0 chr4 77844454 77844477 -124483870 + AT_rich Low_complexity Low_complexity 1 23 0 1734 130 74 34 chr4 77845118 77845442 -124482905 + MER1B DNA MER1_type 1 337 0 210 180 20 0 chr4 77845873 77845923 -124482424 + (TG)n Simple_repeat Simple_repeat 2 52 0 1485 266 116 17 chr4 77846905 77847426 -124480921 + L2 LINE L2 2440 3008 -305 362 211 164 19 chr4 77847453 77847557 -124480790 - L1MC4 LINE L1 -1069 6973 6855 22 0 0 0 chr4 77847812 77847834 -124480513 + AT_rich Low_complexity Low_complexity 1 22 0 193 188 0 0 chr4 77847923 77847955 -124480392 + L2 LINE L2 3268 3299 -14 326 359 0 8 chr4 77848839 77848956 -124479391 + MIR SINE MIR 117 232 -30 191 111 0 28 chr4 77848965 77849001 -124479346 + (TATG)n Simple_repeat Simple_repeat 3 37 0 2901 9 0 0 chr4 77849426 77849742 -124478605 - AluYb8 SINE Alu -2 316 1 210 330 27 18 chr4 77850189 77850301 -124478046 - MIR SINE MIR -1 261 149 626 343 107 26 chr4 77851297 77851801 -124476546 - L1MEc LINE L1 -2283 3932 3388 340 258 136 63 chr4 77851819 77852327 -124476020 - L1MEc LINE L1 -2927 3288 2744 218 164 0 16 chr4 77852551 77852612 -124475735 + (TA)n Simple_repeat Simple_repeat 2 61 0 314 292 0 0 chr4 77852616 77852705 -124475642 + L1MC4 LINE L1 6615 6703 -1339 33 66 0 0 chr4 77852806 77852867 -124475480 + AT_rich Low_complexity Low_complexity 1 61 0 685 167 68 0 chr4 77852996 77853128 -124475219 + MLT1B LTR MaLR 249 389 -1 235 374 22 11 chr4 77853143 77853234 -124475113 - L2 LINE L2 -536 2778 2687 16875 176 48 4 chr4 77853243 77856830 -124471517 + L1PA13 LINE L1 1815 5556 -612 4015 117 0 0 chr4 77857067 77857659 -124470688 + L1PA13 LINE L1 5567 6158 -5 222 339 22 0 chr4 77858296 77858389 -124469958 + MIR SINE MIR 36 129 -93 278 341 22 89 chr4 77858464 77858643 -124469704 - L2 LINE L2 -219 3053 2887 241 309 12 12 chr4 77858684 77858765 -124469582 - MIR SINE MIR -130 132 52 2286 117 42 11 chr4 77859086 77859446 -124468901 + THE1C LTR MaLR 1 371 -4 306 312 24 8 chr4 77859615 77859740 -124468607 - L1MEc LINE L1 -4939 1457 1331 340 273 42 67 chr4 77859793 77859958 -124468389 + LTR16C LTR ERVL 311 471 -20 214 105 35 35 chr4 77861115 77861172 -124467175 + (TATAA)n Simple_repeat Simple_repeat 4 60 0 461 276 83 17 chr4 77861177 77861441 -124466906 + L1ME LINE L1 4016 4306 -1840 625 298 116 13 chr4 77861608 77862057 -124466290 + L1ME LINE L1 4561 5055 -1091 919 301 34 17 chr4 77862200 77862669 -124465678 + L1ME LINE L1 5294 5770 -392 246 266 38 19 chr4 77863049 77863207 -124465140 + (TA)n Simple_repeat Simple_repeat 1 161 0 1433 120 38 0 chr4 77865423 77865632 -124462715 - AluY SINE Alu -10 301 85 214 411 0 0 chr4 77866322 77866490 -124461857 + (CCA)n Simple_repeat Simple_repeat 1 168 0 514 114 0 0 chr4 77867467 77867537 -124460810 - LTR34 LTR ERV1 0 699 630 1833 174 57 67 chr4 77867548 77867967 -124460380 + MSTA LTR MaLR 5 419 -9 1960 127 39 77 chr4 77867972 77868491 -124459856 - LTR34 LTR ERV1 -64 635 6 527 250 151 0 chr4 77868512 77868684 -124459663 - MIR SINE MIR 0 262 65 2029 214 14 40 chr4 77870081 77870600 -124457747 + MLT1D LTR MaLR 1 505 0 219 299 124 55 chr4 77870666 77870867 -124457480 - MIR SINE MIR -37 225 11 1973 258 43 18 chr4 77870919 77871521 -124456826 + LTR68 LTR ERV1 1 617 -123 222 37 0 0 chr4 77874110 77874137 -124454210 + (CA)n Simple_repeat Simple_repeat 2 28 0 382 188 0 0 chr4 77874142 77874211 -124454136 + MER41A LTR ERV1 398 466 -88 228 229 0 0 chr4 77874985 77875033 -124453314 + L2 LINE L2 3266 3313 0 5456 52 4 1 chr4 77876939 77877651 -124450696 - HERVK11 LTR ERVK -1658 6295 5525 * 13217 76 1 0 chr4 77877649 77879337 -124449010 - HERVK11 LTR ERVK -3352 4601 2912 2958 95 39 4 chr4 77879329 77879908 -124448439 - HERVK11 LTR ERVK -5253 2700 1165 * 3196 133 43 4 chr4 77879908 77880677 -124447670 - HERVK11 LTR ERVK -7102 851 1 6516 130 20 19 chr4 77880677 77881745 -124446602 - MER11C LTR ERVK 0 1071 3 5686 198 24 10 chr4 77881751 77882682 -124445665 - L1 LINE L1 -1535 4611 3694 2628 33 3 0 chr4 77882682 77882981 -124445366 - AluY SINE Alu -11 300 1 5686 198 24 10 chr4 77882981 77883108 -124445239 - L1 LINE L1 -2452 3694 3570 2383 84 0 3 chr4 77883108 77883404 -124444943 - AluY SINE Alu -16 295 1 5686 198 24 10 chr4 77883404 77883912 -124444435 - L1 LINE L1 -2576 3570 3025 1769 109 4 14 chr4 77883913 77884189 -124444158 - L1PA13 LINE L1 0 6163 5891 7348 30 10 0 chr4 77884210 77885334 -124443013 - L1PA4 LINE L1 -11 6144 5017 10557 42 5 0 chr4 77885334 77886702 -124441645 + L1PA4 LINE L1 3670 5044 -1102 1993 118 0 0 chr4 77886701 77887005 -124441342 - L1PA13 LINE L1 -258 5910 5607 * 6332 201 3 1 chr4 77887004 77888333 -124440014 - L1PA13 LINE L1 -2018 4779 3449 2263 117 16 53 chr4 77888335 77888670 -124439677 + THE1B LTR MaLR 3 324 -40 2296 121 0 0 chr4 77888670 77888975 -124439372 - AluSx SINE Alu -7 305 1 2263 117 16 53 chr4 77888975 77889014 -124439333 + THE1B LTR MaLR 324 363 -1 7772 119 41 45 chr4 77889015 77890363 -124437984 + THE1B-int LTR MaLR 1 1343 -237 1648 113 0 4 chr4 77890363 77890602 -124437745 + THE1B LTR MaLR 127 364 0 6092 239 20 22 chr4 77890605 77892397 -124435950 - L1PA13 LINE L1 -3347 3450 1662 4262 241 91 5 chr4 77892397 77893435 -124434912 - L1PA13 LINE L1 -5660 1127 1 2890 210 55 12 chr4 77893445 77894389 -124433958 - L1M2 LINE L1 -3107 3741 2754 904 189 38 0 chr4 77894407 77894592 -124433755 + MER41D LTR ERV1 1 192 -365 708 196 14 7 chr4 77894590 77894738 -124433609 + MER41D LTR ERV1 66 214 -343 * 15693 204 19 4 chr4 77895134 77901898 -124426449 + L1P4 LINE L1 4 6934 -669 6702 261 37 47 chr4 77901918 77902437 -124425910 - L1M2 LINE L1 -4530 2319 1796 1538 200 46 4 chr4 77902437 77902717 -124425630 + AluJb SINE Alu 1 292 -20 6702 261 37 47 chr4 77902717 77902791 -124425556 - L1M2 LINE L1 -5053 1796 1723 2119 131 3 0 chr4 77902791 77903088 -124425259 + AluSx SINE Alu 1 298 -14 6702 261 37 47 chr4 77903088 77904820 -124423527 - L1M2 LINE L1 -5126 1723 17 337 167 225 0 chr4 77905141 77905251 -124423096 - MIR SINE MIR -73 189 50 382 256 5 98 chr4 77905762 77905977 -124422370 - MER112 DNA MER1_type 0 260 66 214 200 0 20 chr4 77905982 77906032 -124422315 + (CATA)n Simple_repeat Simple_repeat 4 52 0 372 229 119 9 chr4 77906828 77906937 -124421410 - MIR SINE MIR -74 188 68 205 402 29 17 chr4 77907076 77907250 -124421097 + L2 LINE L2 2847 3022 -250 1905 215 44 38 chr4 77907694 77908196 -124420151 + MLT1D LTR MaLR 1 505 0 678 25 0 0 chr4 77909684 77909764 -124418583 + (A)n Simple_repeat Simple_repeat 1 80 0 259 329 12 0 chr4 77910753 77910835 -124417512 + L2 LINE L2 2972 3054 -218 243 0 0 0 chr4 77910905 77910932 -124417415 + (CA)n Simple_repeat Simple_repeat 2 28 0 6457 140 24 36 chr4 77911286 77911895 -124416452 + Tigger3b DNA MER2_type 1 616 -2412 1157 226 73 4 chr4 77911895 77912170 -124416177 + AluJo SINE Alu 2 295 -7 6457 140 24 36 chr4 77912170 77912806 -124415541 + Tigger3b DNA MER2_type 616 1231 0 337 294 148 17 chr4 77913314 77913467 -124414880 + MIR SINE MIR 2 157 -59 919 242 42 8 chr4 77913476 77913716 -124414631 - MIR SINE MIR 0 262 15 312 314 51 17 chr4 77915214 77915332 -124413015 + MIR SINE MIR 118 239 -23 32 57 0 0 chr4 77916374 77916427 -124411920 + AT_rich Low_complexity Low_complexity 1 53 0 2098 163 79 56 chr4 77917526 77918030 -124410317 + LTR44 LTR ERV1 2 517 -2 23 0 0 0 chr4 77918942 77918965 -124409382 + AT_rich Low_complexity Low_complexity 1 23 0 1478 63 15 10 chr4 77920184 77920389 -124407958 + L1MA1 LINE L1 6088 6293 -9 23 0 0 0 chr4 77920407 77920430 -124407917 + AT_rich Low_complexity Low_complexity 1 23 0 215 253 13 0 chr4 77920576 77920655 -124407692 + GA-rich Low_complexity Low_complexity 1 80 0 267 250 12 12 chr4 77920690 77920770 -124407577 + CT-rich Low_complexity Low_complexity 5 84 0 2158 98 7 10 chr4 77921048 77921343 -124407004 + AluSc SINE Alu 11 304 -5 344 311 78 69 chr4 77921697 77922057 -124406290 - L2 LINE L2 -21 3292 2930 1953 137 7 0 chr4 77922116 77922408 -124405939 + AluSx SINE Alu 3 296 -16 207 65 65 0 chr4 77923344 77923390 -124404957 + (TA)n Simple_repeat Simple_repeat 2 50 0 210 37 0 0 chr4 77924098 77924125 -124404222 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 21 57 0 0 chr4 77924189 77924224 -124404123 + AT_rich Low_complexity Low_complexity 1 35 0 234 22 22 44 chr4 77929217 77929262 -124399085 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 7341 38 2 2 chr4 77929262 77930579 -124397768 - L1PA5 LINE L1 -16 6138 4822 3673 53 4 0 chr4 77930579 77931073 -124397274 + L1PA5 LINE L1 4347 4842 -1304 23 33 0 0 chr4 77931372 77931402 -124396945 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 77931621 77931649 -124396698 + AT_rich Low_complexity Low_complexity 1 28 0 1393 194 102 57 chr4 77934305 77934764 -124393583 - L1ME2 LINE L1 -9 6155 5676 1243 266 106 26 chr4 77934776 77935268 -124393079 + MLT1H1 LTR MaLR 12 542 -13 1312 269 58 30 chr4 77935279 77935705 -124392642 - L1ME2 LINE L1 -497 5667 5254 2531 58 0 0 chr4 77935705 77936013 -124392334 - AluY SINE Alu -3 308 1 1312 269 58 30 chr4 77936013 77936503 -124391844 - L1ME2 LINE L1 -910 5254 4721 12607 153 44 20 chr4 77936914 77939097 -124389250 + Tigger1 DNA MER2_type 1 2246 -172 2175 141 0 6 chr4 77939097 77939410 -124388937 + 7SLRNA srpRNA srpRNA 5 315 -5 12607 153 44 20 chr4 77939410 77939588 -124388759 + Tigger1 DNA MER2_type 2246 2418 0 2739 176 46 63 chr4 77940209 77940879 -124387468 + L1MB7 LINE L1 5411 6069 -115 482 256 66 40 chr4 77940912 77941139 -124387208 + L2 LINE L2 2804 3036 -236 237 222 0 0 chr4 77941491 77941554 -124386793 + GA-rich Low_complexity Low_complexity 6 68 0 555 283 148 17 chr4 77944114 77944344 -124384003 - MIR SINE MIR 0 262 3 252 349 68 7 chr4 77944531 77944677 -124383670 - L2 LINE L2 0 3313 3159 1507 311 84 41 chr4 77944713 77945113 -124383234 - L2 LINE L2 -243 3070 2689 2080 136 3 0 chr4 77945113 77945407 -124382940 + AluSx SINE Alu 3 297 -15 1507 311 84 41 chr4 77945407 77945897 -124382450 - L2 LINE L2 -624 2689 2146 341 273 63 42 chr4 77945919 77946062 -124382285 + MER5B DNA MER1_type 14 159 -19 209 369 41 16 chr4 77946131 77946253 -124382094 + L2 LINE L2 2535 2659 -655 373 335 79 29 chr4 77946282 77946600 -124381747 + L2 LINE L2 2742 3076 -196 462 197 63 16 chr4 77946608 77946735 -124381612 - MER112 DNA MER1_type -39 221 89 1078 79 4 8 chr4 77946785 77947028 -124381319 + (TA)n Simple_repeat Simple_repeat 1 242 0 222 37 0 0 chr4 77947027 77947054 -124381293 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 294 341 22 22 chr4 77947066 77947201 -124381146 + L2 LINE L2 3136 3270 -2 499 315 79 12 chr4 77948018 77948183 -124380164 - MLT1K LTR MaLR -372 216 41 833 184 53 171 chr4 77948703 77949213 -124379134 - LTR37B LTR ERV1 -18 450 1 2155 96 0 54 chr4 77950035 77950348 -124377999 - AluSc SINE Alu -13 296 1 1480 79 25 0 chr4 77950586 77950789 -124377558 + L1PA8 LINE L1 5960 6167 -5 4093 200 27 40 chr4 77952051 77952609 -124375738 - L1MA10 LINE L1 0 6398 5857 247 78 39 0 chr4 77952609 77952660 -124375687 + (TG)n Simple_repeat Simple_repeat 2 54 0 4093 200 27 40 chr4 77952660 77953094 -124375253 - L1MA10 LINE L1 -541 5857 5419 * 8568 216 50 16 chr4 77953071 77953531 -124374816 - L1MA10 LINE L1 -1016 5194 4751 1534 245 34 6 chr4 77953531 77953886 -124374461 + MLT1A1 LTR MaLR 1 365 0 8568 216 50 16 chr4 77953886 77954535 -124373812 - L1MA10 LINE L1 -1459 4751 4126 2163 107 14 0 chr4 77954535 77954824 -124373523 - AluSg SINE Alu -17 293 1 8568 216 50 16 chr4 77954824 77956028 -124372319 - L1MA10 LINE L1 -2084 4126 2801 1550 217 18 23 chr4 77956051 77956488 -124371859 - L1MA10 LINE L1 -4646 1495 1061 2974 190 22 2 chr4 77956489 77957036 -124371311 - Tigger1 DNA MER2_type -1860 558 1 466 285 57 31 chr4 77957965 77958158 -124370189 - MIR SINE MIR -31 231 34 535 266 163 65 chr4 77959471 77959888 -124368459 + MLT1K LTR MaLR 7 464 -124 219 315 67 0 chr4 77959891 77959980 -124368367 + MIR SINE MIR 116 210 -52 385 301 101 17 chr4 77961455 77961751 -124366596 - L1MEc LINE L1 -3348 3500 3180 787 185 0 0 chr4 77961760 77961890 -124366457 - FRAM SINE Alu -15 161 32 32 75 0 0 chr4 77962048 77962115 -124366232 + AT_rich Low_complexity Low_complexity 1 67 0 1416 111 58 23 chr4 77962234 77962495 -124365852 - L1MA5A LINE L1 -3 6294 6025 398 223 58 0 chr4 77962511 77962632 -124365715 - L1MEc LINE L1 -4083 2946 2819 2442 201 23 45 chr4 77962635 77963237 -124365110 - L1MD3 LINE L1 -5 7990 7402 364 235 0 12 chr4 77963238 77963323 -124365024 - MLT1F1 LTR MaLR -445 122 39 488 311 93 19 chr4 77963374 77963644 -124364703 - L1MEc LINE L1 -4196 2833 2544 21 36 0 0 chr4 77964318 77964346 -124364001 + AT_rich Low_complexity Low_complexity 1 28 0 185 344 0 0 chr4 77964426 77964487 -124363860 + L2 LINE L2 3247 3307 -6 239 275 143 0 chr4 77965071 77965162 -124363185 - MIR SINE MIR -60 202 99 311 248 222 39 chr4 77965989 77966219 -124362128 - L1M4 LINE L1 -5505 1344 1073 631 250 43 64 chr4 77968589 77968777 -124359570 - MIR SINE MIR -43 219 36 1925 247 30 18 chr4 77969015 77969578 -124358769 + L1MD3 LINE L1 7405 7974 -21 306 217 0 17 chr4 77970531 77970591 -124357756 + LTR16C LTR ERVL 268 326 -165 232 282 0 28 chr4 77970651 77970722 -124357625 + LTR16C LTR ERVL 423 491 0 2210 106 0 20 chr4 77971671 77971973 -124356374 - AluSg SINE Alu -14 296 1 229 313 31 31 chr4 77972607 77972703 -124355644 - L2 LINE L2 -8 3264 3169 12282 194 40 16 chr4 77973129 77973806 -124354541 - L1MA4A LINE L1 -24 6981 6322 2272 92 0 0 chr4 77973806 77974100 -124354247 + AluY SINE Alu 1 294 -17 12282 194 40 16 chr4 77974100 77977214 -124351133 - L1MA4A LINE L1 -683 6322 3086 7267 44 0 7 chr4 77977215 77978197 -124350150 + L1PA6 LINE L1 5179 6154 0 6029 220 24 3 chr4 77978473 77980086 -124348261 - L1MA4A LINE L1 -3746 3102 1455 692 227 30 0 chr4 77980087 77980219 -124348128 + Tigger3(Golem) DNA MER2_type 2888 3023 -6 185 261 0 0 chr4 77981105 77981151 -124347196 - MIR SINE MIR -1 261 216 306 308 50 17 chr4 77981967 77982087 -124346260 + MIR SINE MIR 119 242 -20 21 0 0 0 chr4 77982927 77982948 -124345399 + AT_rich Low_complexity Low_complexity 1 21 0 2029 179 91 46 chr4 77983079 77983576 -124344771 + LTR44 LTR ERV1 1 519 0 253 191 0 0 chr4 77984350 77984397 -124343950 - L2 LINE L2 -1 3312 3266 235 204 0 0 chr4 77985718 77985772 -124342575 - MLT1G3 LTR MaLR -228 302 249 246 270 0 34 chr4 77985850 77985939 -124342408 + A-rich Low_complexity Low_complexity 1 86 0 238 283 13 18 chr4 77985942 77986036 -124342311 + CT-rich Low_complexity Low_complexity 3 161 0 1428 198 35 77 chr4 77987535 77987939 -124340408 - MLT1B LTR MaLR -3 387 1 303 335 53 98 chr4 77988034 77988279 -124340068 - L2 LINE L2 -23 3249 3016 23 33 0 0 chr4 77988622 77988652 -124339695 + AT_rich Low_complexity Low_complexity 1 30 0 724 244 110 82 chr4 77988818 77989270 -124339077 + MLT1H LTR MaLR 9 516 -33 245 306 63 45 chr4 77989614 77989725 -124338622 + MIR SINE MIR 40 152 -56 7346 174 54 38 chr4 77990642 77992466 -124335881 + MER4C-int LTR ERV1 4747 6598 0 2277 118 115 21 chr4 77992468 77992893 -124335454 + MER4C LTR ERV1 1 465 0 715 234 66 0 chr4 77992961 77993128 -124335219 - MER5A DNA MER1_type -1 188 11 2215 166 79 32 chr4 77993670 77994174 -124334173 - MER41B LTR ERV1 -12 610 111 398 253 41 27 chr4 77994174 77994320 -124334027 - MER41B-int LTR ERV1 -3 6673 6526 12777 179 49 60 chr4 77994769 77997065 -124331282 - MER41-int LTR ERV1 -528 5418 3273 3716 100 2 4 chr4 77997065 77997577 -124330770 - MER9 LTR ERVK 0 511 1 12777 179 49 60 chr4 77997577 77998895 -124329452 - MER41-int LTR ERV1 -2673 3273 1942 23 0 0 0 chr4 77998993 77999016 -124329331 + AT_rich Low_complexity Low_complexity 1 23 0 509 320 65 28 chr4 77999310 78000530 -124327817 + L1ME3A LINE L1 4378 5641 -529 439 255 60 51 chr4 78000571 78000806 -124327541 + L1ME3A LINE L1 5711 5947 -223 1900 203 13 13 chr4 78000923 78001313 -124327034 - MLT1B LTR MaLR 0 390 1 1767 226 119 93 chr4 78001444 78002081 -124326266 + MLT1E2 LTR MaLR 1 626 0 333 0 0 0 chr4 78002345 78002382 -124325965 + (T)n Simple_repeat Simple_repeat 1 37 0 192 286 0 0 chr4 78002865 78002907 -124325440 - L2 LINE L2 -10 3262 3221 2345 102 0 0 chr4 78003170 78003483 -124324864 - AluSq SINE Alu 0 313 1 2303 93 0 3 chr4 78003516 78003816 -124324531 - AluSq SINE Alu -14 299 1 1538 199 17 61 chr4 78004810 78005218 -124323129 - MLT1B LTR MaLR 0 390 1 189 250 66 13 chr4 78005470 78005546 -124322801 - L2 LINE L2 -176 3096 3017 631 244 146 73 chr4 78006069 78006533 -124321814 + MLT1H LTR MaLR 7 547 -2 2112 147 113 10 chr4 78006556 78006944 -124321403 - MSTA LTR MaLR 0 428 1 336 261 54 36 chr4 78007173 78007284 -124321063 + MIR SINE MIR 40 152 -56 4148 50 13 6 chr4 78007887 78008412 -124319935 + L1PA7 LINE L1 5615 6143 -11 27 0 0 0 chr4 78008412 78008439 -124319908 + AT_rich Low_complexity Low_complexity 1 27 0 551 307 53 13 chr4 78008486 78008714 -124319633 - LTR16C LTR ERVL 0 491 255 710 309 110 29 chr4 78008715 78009617 -124318730 + L1MEc LINE L1 34 1008 -5388 28 0 0 26 chr4 78009617 78009633 -124318714 + AT_rich Low_complexity Low_complexity 1 16 -22 203 86 0 29 chr4 78009633 78009668 -124318679 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 28 0 0 26 chr4 78009668 78009690 -124318657 + AT_rich Low_complexity Low_complexity 16 38 0 2894 151 61 2 chr4 78010234 78010757 -124317590 + MER41C LTR ERV1 1 554 0 7613 188 76 56 chr4 78010757 78013052 -124315295 + MER41C-int LTR ERV1 1 2342 -5414 21 57 0 0 chr4 78013063 78013098 -124315249 + AT_rich Low_complexity Low_complexity 1 35 0 189 74 0 0 chr4 78013318 78013345 -124315002 + (CA)n Simple_repeat Simple_repeat 2 28 0 30783 137 22 35 chr4 78014186 78014612 -124313735 + MER41C-int LTR ERV1 2336 2766 -4990 2318 116 7 0 chr4 78014612 78014922 -124313425 + AluSx SINE Alu 1 312 0 30783 137 22 35 chr4 78014922 78017489 -124310858 + MER41C-int LTR ERV1 2766 5365 -2391 2279 108 3 0 chr4 78017489 78017786 -124310561 - AluSp SINE Alu -15 298 1 30783 137 22 35 chr4 78017786 78019785 -124308562 + MER41C-int LTR ERV1 5365 7254 -502 2184 118 7 0 chr4 78019785 78020090 -124308257 + AluSp SINE Alu 1 307 -6 30783 137 22 35 chr4 78020090 78020587 -124307760 + MER41C-int LTR ERV1 7254 7756 0 3124 159 30 6 chr4 78020587 78021128 -124307219 + MER41C LTR ERV1 1 554 0 3317 156 50 0 chr4 78021128 78021724 -124306623 + MER41C-int LTR ERV1 1 626 -7130 589 179 9 0 chr4 78021724 78021836 -124306511 + MER41B LTR ERV1 523 635 0 469 266 95 24 chr4 78022146 78022315 -124306032 - MIR SINE MIR -72 190 10 2420 70 3 7 chr4 78022543 78022843 -124305504 - AluY SINE Alu -12 299 1 3652 91 9 14 chr4 78023687 78024237 -124304110 - MER41B LTR ERV1 -88 547 1 27 0 0 0 chr4 78024546 78024573 -124303774 + AT_rich Low_complexity Low_complexity 1 27 0 255 61 0 0 chr4 78025091 78025124 -124303223 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 384 296 83 35 chr4 78025566 78025735 -124302612 - MIR SINE MIR -70 192 16 414 0 0 0 chr4 78027297 78027343 -124301004 + (TG)n Simple_repeat Simple_repeat 2 47 0 448 269 123 27 chr4 78028062 78028283 -124300064 + MIR SINE MIR 12 257 -5 1576 212 24 45 chr4 78028318 78028700 -124299647 + MLT1A2 LTR MaLR 1 374 0 183 316 53 21 chr4 78030321 78030416 -124297931 - MIR SINE MIR -54 208 111 808 182 0 0 chr4 78030781 78030913 -124297434 + FLAM_C SINE Alu 1 132 -1 202 185 19 19 chr4 78031133 78031149 -124297198 + (TA)n Simple_repeat Simple_repeat 1 16 -38 2086 101 0 21 chr4 78031149 78031436 -124296911 + AluSc SINE Alu 6 286 -23 202 185 19 19 chr4 78031436 78031473 -124296874 + (TA)n Simple_repeat Simple_repeat 15 54 0 209 133 33 33 chr4 78032202 78032262 -124296085 + (TAA)n Simple_repeat Simple_repeat 2 61 0 225 154 0 0 chr4 78032311 78032350 -124295997 + (TG)n Simple_repeat Simple_repeat 2 40 0 377 259 0 42 chr4 78032567 78032710 -124295637 - L1MEc LINE L1 -5671 725 589 33 66 0 0 chr4 78032795 78032856 -124295491 + AT_rich Low_complexity Low_complexity 1 61 0 234 345 65 14 chr4 78033999 78034138 -124294209 - L2 LINE L2 -19 3253 3108 420 262 9 116 chr4 78034297 78034530 -124293817 + Zaphod DNA AcHobo 1 208 -3823 1656 224 79 31 chr4 78034830 78035294 -124293053 + Zaphod DNA AcHobo 3392 3893 -138 1382 213 47 24 chr4 78035294 78035632 -124292715 - MER7A DNA MER2_type -2 344 1 1656 224 79 31 chr4 78035632 78035773 -124292574 + Zaphod DNA AcHobo 3893 4026 -5 380 282 122 17 chr4 78037583 78037764 -124290583 - MER63A DNA MER1_type -8 202 3 234 0 0 0 chr4 78038006 78038032 -124290315 + (TTA)n Simple_repeat Simple_repeat 2 27 0 347 280 212 0 chr4 78038341 78038459 -124289888 - MIR3 SINE MIR -31 177 35 195 309 0 18 chr4 78038566 78038621 -124289726 - L2 LINE L2 -17 3296 3243 498 289 133 47 chr4 78038846 78039102 -124289245 + MER110 LTR ERV1 214 491 0 1017 246 195 112 chr4 78039246 78040255 -124288092 + MER52A LTR ERV1 663 1755 0 2327 150 33 10 chr4 78040795 78041189 -124287158 + MSTB LTR MaLR 1 403 -23 533 206 10 0 chr4 78041700 78041802 -124286545 - L2 LINE L2 -26 3287 3185 225 291 79 25 chr4 78042079 78042193 -124286154 + MIR SINE MIR 7 115 -93 430 234 72 0 chr4 78042354 78042465 -124285882 - MIR SINE MIR -38 224 106 2562 229 63 48 chr4 78043305 78044104 -124284243 - MER69B DNA AcHobo -383 843 33 285 309 36 0 chr4 78045546 78045630 -124282717 + L2 LINE L2 3227 3313 0 983 181 50 41 chr4 78045979 78046194 -124282153 + MLT1B LTR MaLR 1 217 -173 5398 90 5 71 chr4 78046194 78047016 -124281331 + Charlie3 DNA MER1_type 1 768 -1942 1754 45 0 0 chr4 78047017 78047219 -124281128 + AluY SINE Alu 1 202 -109 17126 93 6 29 chr4 78047319 78049015 -124279332 - Charlie3 DNA MER1_type -242 2464 839 2547 59 0 0 chr4 78049015 78049319 -124279028 - AluY SINE Alu -7 304 1 17126 93 6 29 chr4 78049319 78050039 -124278308 - Charlie3 DNA MER1_type -1867 839 104 667 99 18 18 chr4 78050417 78050528 -124277819 + AluY SINE Alu 187 297 -14 13251 100 6 4 chr4 78050530 78052328 -124276019 + Charlie3 DNA MER1_type 762 2561 -149 187 51 0 51 chr4 78052328 78052367 -124275980 + (TTAA)n Simple_repeat Simple_repeat 2 38 0 248 180 16 0 chr4 78052367 78052428 -124275919 + (TA)n Simple_repeat Simple_repeat 1 62 0 988 150 56 6 chr4 78052434 78052614 -124275733 + Charlie3 DNA MER1_type 2514 2702 -8 1278 129 0 5 chr4 78052614 78052800 -124275547 + MLT1B LTR MaLR 206 390 0 1894 137 148 8 chr4 78052921 78053278 -124275069 - MSTA LTR MaLR -21 407 1 1020 200 19 86 chr4 78053289 78053730 -124274617 + L1MC4 LINE L1 7419 7832 -4 734 157 0 15 chr4 78054479 78054613 -124273734 + ORSL DNA AcHobo 143 274 -1 24 53 0 0 chr4 78054738 78054776 -124273571 + AT_rich Low_complexity Low_complexity 1 38 0 49 43 0 0 chr4 78055169 78055239 -124273108 + AT_rich Low_complexity Low_complexity 1 70 0 200 231 26 0 chr4 78055631 78055670 -124272677 - L2 LINE L2 -48 3224 3185 354 295 57 19 chr4 78056736 78056841 -124271506 + LTR16C LTR ERVL 99 207 -284 1631 153 41 0 chr4 78056859 78057154 -124271193 - MER6 DNA MER2_type -2 863 557 671 195 136 0 chr4 78057356 78057510 -124270837 - MER6 DNA MER2_type -307 558 384 5562 163 41 5 chr4 78057510 78057571 -124270776 - L1MA4 LINE L1 -8 6474 6417 2128 132 44 11 chr4 78057571 78057934 -124270413 + THE1C LTR MaLR 1 375 0 5562 163 41 5 chr4 78057934 78059530 -124268817 - L1MA4 LINE L1 -65 6417 4750 2291 197 36 62 chr4 78059534 78059923 -124268424 - L1MA4 LINE L1 -3908 2420 2059 18561 104 2 7 chr4 78059923 78063478 -124264869 + L1PA7 LINE L1 2590 6154 0 2291 197 36 62 chr4 78063478 78063858 -124264489 - L1MA4 LINE L1 -4269 2059 1671 2164 251 28 8 chr4 78063870 78064524 -124263823 - L1MA4 LINE L1 -4737 1591 925 5629 213 62 2 chr4 78064528 78065976 -124262371 + L1MA4 LINE L1 6 1538 -4065 9794 182 34 14 chr4 78065979 78068710 -124259637 + L1MA4 LINE L1 3416 6204 -278 25 0 0 0 chr4 78068714 78068739 -124259608 + AT_rich Low_complexity Low_complexity 1 25 0 33 80 0 0 chr4 78068765 78068840 -124259507 + AT_rich Low_complexity Low_complexity 1 75 0 4317 186 44 7 chr4 78068864 78069024 -124259323 - L1MA4 LINE L1 -4388 940 787 5252 120 5 6 chr4 78069024 78069805 -124258542 - LTR17 LTR ERV1 0 780 1 4317 186 44 7 chr4 78069805 78070462 -124257885 - L1MA4 LINE L1 -4541 787 93 282 242 0 10 chr4 78070461 78070560 -124257787 - L1MEc LINE L1 -3152 3176 3079 * 642 296 17 47 chr4 78070604 78070763 -124257584 + MIR SINE MIR 37 188 -74 1540 190 53 17 chr4 78070763 78071063 -124257284 + AluJb SINE Alu 1 311 -1 642 296 17 47 chr4 78071063 78071136 -124257211 + MIR SINE MIR 188 262 0 22 56 0 0 chr4 78071138 78071174 -124257173 + AT_rich Low_complexity Low_complexity 1 36 0 26 64 0 0 chr4 78071197 78071244 -124257103 + AT_rich Low_complexity Low_complexity 1 47 0 2256 126 30 8 chr4 78071326 78071691 -124256656 - THE1C LTR MaLR -2 373 1 242 358 78 22 chr4 78072133 78072312 -124256035 + L2 LINE L2 2488 2676 -638 340 318 9 27 chr4 78072329 78072439 -124255908 + MIR SINE MIR 43 150 -112 1493 234 28 11 chr4 78072980 78073339 -124255008 + MLT1A1 LTR MaLR 1 365 0 668 265 91 53 chr4 78074842 78074900 -124253447 - L1MEc LINE L1 -4899 1610 1556 2106 120 7 0 chr4 78074900 78075218 -124253129 + AluSx SINE Alu 1 320 0 668 265 91 53 chr4 78075218 78075554 -124252793 - L1MEc LINE L1 -4953 1556 1200 333 344 70 26 chr4 78075655 78075885 -124252462 + L1ME LINE L1 4918 5157 -989 1107 172 158 56 chr4 78075916 78076219 -124252128 - MER2 DNA MER2_type -10 335 2 393 284 92 22 chr4 78076329 78076367 -124251980 + L1ME LINE L1 5268 5302 -860 1990 157 99 15 chr4 78076367 78076762 -124251585 + MSTA LTR MaLR 1 428 0 393 284 92 22 chr4 78076762 78076952 -124251395 + L1ME LINE L1 5302 5512 -650 22 35 0 0 chr4 78077046 78077075 -124251272 + AT_rich Low_complexity Low_complexity 1 29 0 989 196 64 11 chr4 78077075 78077341 -124251006 - L1MB2 LINE L1 0 6171 5892 * 1681 161 53 0 chr4 78077337 78077803 -124250544 - L1M4 LINE L1 -4065 1263 963 2943 166 55 31 chr4 78077805 78078385 -124249962 - L1M4 LINE L1 -4460 868 275 1097 185 134 16 chr4 78078378 78078413 -124249934 - L1MB2 LINE L1 -659 5524 5494 * 207 0 0 0 chr4 78078413 78078436 -124249911 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1097 185 134 16 chr4 78078436 78079047 -124249300 - L1MB2 LINE L1 -689 5494 4667 477 50 0 0 chr4 78079078 78079138 -124249209 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 1378 179 98 0 chr4 78079138 78079373 -124248974 - AluJb SINE Alu -32 280 23 257 268 116 84 chr4 78079414 78079567 -124248780 + L1ME LINE L1 5590 5758 -406 1121 300 71 36 chr4 78079567 78080071 -124248276 + LTR33A LTR ERVL 2 523 0 257 268 116 84 chr4 78080071 78080201 -124248146 + L1ME LINE L1 5758 5882 -282 1542 232 23 72 chr4 78080514 78080977 -124247370 + MLT1D LTR MaLR 1 436 -69 2226 104 3 3 chr4 78080977 78081284 -124247063 - AluSp SINE Alu -6 307 1 1542 232 23 72 chr4 78081284 78081351 -124246996 + MLT1D LTR MaLR 436 505 0 239 228 0 0 chr4 78081467 78081524 -124246823 + L1MC4 LINE L1 6646 6702 -1340 422 279 192 27 chr4 78082185 78082404 -124245943 + MIR SINE MIR 8 262 0 225 234 47 0 chr4 78082650 78082714 -124245633 - L1MB2 LINE L1 -2168 3978 3912 24 0 0 0 chr4 78083104 78083128 -124245219 + AT_rich Low_complexity Low_complexity 1 24 0 2068 90 4 0 chr4 78083246 78083523 -124244824 - L1PA8 LINE L1 -8 6164 5887 24 0 0 0 chr4 78084356 78084380 -124243967 + AT_rich Low_complexity Low_complexity 1 24 0 7825 177 54 3 chr4 78084479 78086030 -124242317 - L1MC3 LINE L1 0 7785 6156 4427 175 62 12 chr4 78086815 78087867 -124240480 - L1MC3 LINE L1 -743 5403 5040 1092 182 68 0 chr4 78087867 78088103 -124240244 - LTR65 LTR ERV1 -375 294 43 339 284 134 78 chr4 78088722 78089206 -124239141 - L1M2 LINE L1 -5442 1407 522 22 70 0 0 chr4 78090562 78090605 -124237742 + AT_rich Low_complexity Low_complexity 1 43 0 180 0 0 0 chr4 78093234 78093254 -124235093 + (T)n Simple_repeat Simple_repeat 1 20 0 623 304 35 26 chr4 78093339 78093569 -124234778 - MIR SINE MIR -10 252 21 1334 205 196 14 chr4 78093716 78094130 -124234217 + Charlie4a DNA MER1_type 2 490 -18 2411 80 0 3 chr4 78094592 78094904 -124233443 - AluY SINE Alu 0 311 1 295 291 20 64 chr4 78095372 78095528 -124232819 - MIR SINE MIR -63 145 2 21 0 0 0 chr4 78095943 78095964 -124232383 + AT_rich Low_complexity Low_complexity 1 21 0 2240 98 3 0 chr4 78096089 78096384 -124231963 - AluSg SINE Alu -14 296 1 21 0 0 0 chr4 78096391 78096412 -124231935 + AT_rich Low_complexity Low_complexity 1 21 0 924 254 71 37 chr4 78096435 78096844 -124231503 + MER114 LTR ERV 19 441 -207 564 227 181 43 chr4 78096844 78097139 -124231208 - MLT1C LTR MaLR 0 467 155 406 211 89 63 chr4 78097136 78097326 -124231021 + MER114 LTR ERV 445 639 -9 * 2067 267 118 23 chr4 78097367 78098194 -124230153 + L1M3e LINE L1 1128 2033 -4997 188 324 112 43 chr4 78098262 78098494 -124229853 - L2 LINE L2 -173 3099 2861 1614 282 96 26 chr4 78098570 78099411 -124228936 + L2 LINE L2 2403 3312 -1 277 320 102 0 chr4 78099425 78099553 -124228794 - L2 LINE L2 -568 2746 2606 1788 230 65 15 chr4 78100639 78101174 -124227173 + L1ME1 LINE L1 3416 3977 -2169 * 2160 232 36 60 chr4 78101161 78101437 -124226910 + L1ME1 LINE L1 4987 5268 -1066 3397 51 0 2 chr4 78101437 78101868 -124226479 + L1PA4 LINE L1 5723 6152 -3 2160 232 36 60 chr4 78101868 78102250 -124226097 + L1ME1 LINE L1 5268 5658 -676 1815 159 14 0 chr4 78102250 78102540 -124225807 + AluSx SINE Alu 1 294 -18 2160 232 36 60 chr4 78102540 78103101 -124225246 + L1ME1 LINE L1 5658 6334 0 419 283 68 57 chr4 78103313 78103490 -124224857 - MER5A DNA MER1_type -1 188 10 221 276 17 0 chr4 78103750 78103808 -124224539 + CT-rich Low_complexity Low_complexity 3 61 0 256 210 25 0 chr4 78104537 78104618 -124223729 + (TA)n Simple_repeat Simple_repeat 2 84 0 1845 199 11 8 chr4 78104654 78105016 -124223331 - MLT1A1 LTR MaLR -2 363 1 2987 193 17 41 chr4 78106343 78107007 -124221340 - Tigger6b DNA MER2_type 0 1597 950 1907 180 65 12 chr4 78106993 78107515 -124220832 - Tigger6b DNA MER2_type -1013 584 4 * 4308 152 46 18 chr4 78108174 78109080 -124219267 + L1MA8 LINE L1 5328 6295 -5 791 269 23 55 chr4 78109425 78109681 -124218666 - MIR SINE MIR -8 254 7 775 269 64 26 chr4 78109719 78109953 -124218394 - MIR SINE MIR -19 243 1 23 33 0 0 chr4 78111126 78111156 -124217191 + AT_rich Low_complexity Low_complexity 1 30 0 240 260 0 0 chr4 78111277 78111327 -124217020 - L1MC2 LINE L1 -41 6303 6254 21 0 0 0 chr4 78111649 78111670 -124216677 + AT_rich Low_complexity Low_complexity 1 21 0 433 273 67 18 chr4 78112061 78112226 -124216121 - MIR SINE MIR -26 236 64 221 361 17 34 chr4 78113217 78113336 -124215011 + L2 LINE L2 2946 3062 -251 256 322 33 46 chr4 78113427 78113579 -124214768 + MLT1J1 LTR MaLR 67 216 -230 5963 229 60 105 chr4 78113716 78114113 -124214234 + L1MCa LINE L1 1352 1765 -4661 1774 144 44 0 chr4 78114113 78114383 -124213964 + AluSx SINE Alu 3 284 -28 5963 229 60 105 chr4 78114383 78115597 -124212750 + L1MCa LINE L1 1765 3032 -3394 2290 99 0 10 chr4 78115597 78115909 -124212438 + AluY SINE Alu 1 309 -2 5963 229 60 105 chr4 78115909 78118218 -124210129 + L1MCa LINE L1 3032 5229 -1197 1053 220 53 3 chr4 78118224 78118506 -124209841 + L1ME1 LINE L1 1034 1329 -5097 2793 221 17 60 chr4 78118537 78118831 -124209516 + L1ME1 LINE L1 5595 5900 -546 342 0 0 0 chr4 78118831 78118869 -124209478 + (CA)n Simple_repeat Simple_repeat 2 39 0 2793 221 17 60 chr4 78118869 78118898 -124209449 + L1ME1 LINE L1 5900 5929 -517 315 0 0 0 chr4 78118898 78118933 -124209414 + (CA)n Simple_repeat Simple_repeat 2 36 0 2793 221 17 60 chr4 78118933 78119283 -124209064 + L1ME1 LINE L1 5929 6231 -215 1448 251 27 8 chr4 78119283 78119650 -124208697 - MLT1A2 LTR MaLR 0 374 1 2793 221 17 60 chr4 78119650 78119785 -124208562 + L1ME1 LINE L1 6231 6370 -76 240 143 0 0 chr4 78119785 78119827 -124208520 + (TATATG)n Simple_repeat Simple_repeat 6 47 0 239 289 0 0 chr4 78119829 78119919 -124208428 + L1MC4 LINE L1 6614 6703 -1339 338 196 31 21 chr4 78119921 78120018 -124208329 + L1MA10 LINE L1 6236 6333 -1 231 114 0 0 chr4 78120573 78120608 -124207739 + (T)n Simple_repeat Simple_repeat 1 35 0 26 0 0 0 chr4 78121481 78121507 -124206840 + AT_rich Low_complexity Low_complexity 1 26 0 373 272 15 81 chr4 78121935 78121996 -124206351 + L2 LINE L2 3187 3236 -77 1917 137 0 48 chr4 78121996 78122311 -124206036 - AluSx SINE Alu -10 302 3 373 272 15 81 chr4 78122311 78122385 -124205962 + L2 LINE L2 3236 3313 0 1968 128 0 31 chr4 78122634 78122954 -124205393 - AluSg SINE Alu 0 310 1 234 175 0 0 chr4 78123058 78123098 -124205249 + MIR SINE MIR 116 155 -107 598 220 87 66 chr4 78123099 78123340 -124205007 - L2 LINE L2 -3 3310 3065 418 277 51 51 chr4 78123373 78123568 -124204779 - L1MC4 LINE L1 -18 8024 7830 644 226 20 67 chr4 78123600 78123795 -124204552 - L1ME2 LINE L1 -19 6079 5894 * 3695 243 55 33 chr4 78123788 78125164 -124203183 - L1ME2 LINE L1 -755 5325 3920 1104 300 75 32 chr4 78125188 78125658 -124202689 - L1ME2 LINE L1 -5575 495 6 1204 291 85 36 chr4 78125665 78125699 -124202648 - L2 LINE L2 -244 3069 3038 2220 168 12 5 chr4 78125699 78126099 -124202248 + MER57A LTR ERV1 1 403 0 1204 291 85 36 chr4 78126099 78126700 -124201647 - L2 LINE L2 -275 3038 2413 1578 150 47 31 chr4 78126700 78127040 -124201307 - MER4A LTR ERV1 0 664 261 593 83 42 21 chr4 78127040 78127136 -124201211 - MER4A LTR ERV1 -566 98 1 2153 118 3 0 chr4 78127764 78128061 -124200286 + AluSg SINE Alu 1 298 -12 22 70 0 0 chr4 78128651 78128694 -124199653 + AT_rich Low_complexity Low_complexity 1 43 0 243 0 0 0 chr4 78130749 78130776 -124197571 + (TAA)n Simple_repeat Simple_repeat 2 28 0 23 68 0 0 chr4 78130851 78130895 -124197452 + AT_rich Low_complexity Low_complexity 1 44 0 1633 89 0 9 chr4 78131216 78131456 -124196891 + AluY SINE Alu 82 311 0 244 280 140 11 chr4 78131784 78131877 -124196470 - MIR3 SINE MIR 0 208 104 252 309 85 11 chr4 78132831 78132925 -124195422 - MIR3 SINE MIR -36 172 72 3181 114 20 22 chr4 78133091 78133584 -124194763 - LTR22B LTR ERVK 0 492 1 221 245 0 20 chr4 78133967 78134016 -124194331 + (CA)n Simple_repeat Simple_repeat 1 48 0 2300 158 46 2 chr4 78134512 78134922 -124193425 - MSTA LTR MaLR 0 428 1 296 328 56 14 chr4 78135098 78135229 -124193118 - MIR SINE MIR -63 145 61 684 246 114 14 chr4 78135239 78135459 -124192888 + MIR SINE MIR 14 255 -7 2676 135 35 69 chr4 78137148 78137771 -124190576 - LTR38B LTR ERV1 -8 602 1 1604 185 10 7 chr4 78138031 78138323 -124190024 - AluJo SINE Alu -19 293 1 183 303 101 37 chr4 78138563 78138672 -124189675 - L2 LINE L2 -5 3308 3193 1334 214 58 12 chr4 78139654 78139972 -124188375 - MER61B LTR ERV1 0 425 1 2498 119 11 0 chr4 78139972 78140350 -124187997 - MER61B-int LTR ERV1 0 5217 4836 30380 117 11 58 chr4 78140352 78146791 -124181556 - L1PA7 LINE L1 -20 6134 12 539 261 28 51 chr4 78147424 78147600 -124180747 + MER5B DNA MER1_type 1 172 -6 1134 280 187 23 chr4 78147635 78148424 -124179923 + L2 LINE L2 2156 3074 -239 414 298 43 14 chr4 78148804 78148945 -124179402 + L3 LINE CR1 1253 1397 -180 1221 135 126 108 chr4 78150040 78150373 -124177974 - MER2 DNA MER2_type -6 339 1 258 359 84 0 chr4 78151387 78151518 -124176829 - L2 LINE L2 -781 2533 2392 277 306 68 16 chr4 78151532 78151842 -124176505 - L1M4 LINE L1 -1440 4706 4381 497 293 98 73 chr4 78151908 78152458 -124175889 - L1M4 LINE L1 -2947 3199 2636 34 55 0 0 chr4 78153141 78153196 -124175151 + AT_rich Low_complexity Low_complexity 1 55 0 397 304 121 26 chr4 78153228 78153365 -124174982 - HAL1b LINE L1 -441 907 784 1711 177 78 21 chr4 78153365 78153738 -124174609 - MSTD LTR MaLR -1 395 2 397 304 121 26 chr4 78153738 78153988 -124174359 - HAL1b LINE L1 -564 784 483 4754 115 14 16 chr4 78154008 78154373 -124173974 + L1PA13 LINE L1 5433 5797 -366 230 54 0 27 chr4 78154373 78154410 -124173937 + (CA)n Simple_repeat Simple_repeat 2 37 0 4754 115 14 16 chr4 78154410 78154775 -124173572 + L1PA13 LINE L1 5797 6161 -2 29 28 0 0 chr4 78154775 78154811 -124173536 + AT_rich Low_complexity Low_complexity 1 36 0 293 285 0 66 chr4 78154945 78155096 -124173251 - L1MC3 LINE L1 -1628 6157 6017 257 330 74 59 chr4 78155850 78156053 -124172294 + L2 LINE L2 2891 3096 -176 515 358 57 24 chr4 78156853 78157149 -124171198 + L3 LINE CR1 947 1252 -325 200 292 112 11 chr4 78157177 78157266 -124171081 + L3 LINE CR1 1377 1474 -103 786 298 110 4 chr4 78157864 78158136 -124170211 - L2 LINE L2 -2 3311 3011 347 322 84 30 chr4 78158136 78158338 -124170009 + LTR33 LTR ERVL 1 213 -308 441 324 70 0 chr4 78158370 78158555 -124169792 + LTR33 LTR ERVL 260 457 -64 606 251 81 120 chr4 78158600 78159021 -124169326 - L2 LINE L2 -297 3016 2614 224 241 0 17 chr4 78159863 78159921 -124168426 + A-rich Low_complexity Low_complexity 3 59 0 254 255 0 0 chr4 78161116 78161163 -124167184 + MIR SINE MIR 205 251 -11 2461 96 0 0 chr4 78161452 78161764 -124166583 + AluSx SINE Alu 1 312 0 342 288 61 43 chr4 78162760 78162923 -124165424 + MIR SINE MIR 10 175 -87 276 300 0 0 chr4 78163084 78163154 -124165193 + MIR SINE MIR 183 252 -10 440 280 125 29 chr4 78163742 78164117 -124164230 - L1ME4a LINE L1 -19 6102 5692 199 263 44 34 chr4 78164516 78164616 -124163731 + MIR SINE MIR 87 189 -50 271 223 24 13 chr4 78165612 78165709 -124162638 - L1ME LINE L1 -401 5769 5673 286 417 39 0 chr4 78165716 78165872 -124162475 - L2 LINE L2 0 3272 3111 231 88 0 0 chr4 78165942 78165976 -124162371 + (TG)n Simple_repeat Simple_repeat 2 35 0 220 383 23 23 chr4 78166274 78166402 -124161945 - L2 LINE L2 -527 2787 2660 377 285 52 84 chr4 78166431 78166775 -124161572 - L2 LINE L2 -813 2501 2169 194 328 103 17 chr4 78168367 78168483 -124159864 + L2 LINE L2 3147 3272 0 1568 146 134 0 chr4 78168512 78168773 -124159574 + AluSx SINE Alu 1 296 -6 6797 62 8 7 chr4 78169501 78170648 -124157699 + L1PA6 LINE L1 5000 6153 -1 312 282 65 51 chr4 78171473 78171689 -124156658 + L1ME LINE L1 5622 5840 -281 262 158 0 35 chr4 78172082 78172139 -124156208 + L1MB8 LINE L1 6123 6177 -1 1636 148 72 4 chr4 78172545 78172822 -124155525 - AluJb SINE Alu -15 297 2 1788 153 133 29 chr4 78172897 78173323 -124155024 + L1MD1 LINE L1 5771 6236 -6 446 333 35 12 chr4 78173612 78173783 -124154564 - MIR SINE MIR -70 192 18 25 51 0 0 chr4 78174694 78174733 -124153614 + AT_rich Low_complexity Low_complexity 1 39 0 2222 166 157 51 chr4 78175622 78176058 -124152289 + Charlie1 DNA MER1_type 1968 2495 -266 2399 81 0 3 chr4 78176058 78176368 -124151979 + AluY SINE Alu 1 309 -2 2222 166 157 51 chr4 78176368 78176575 -124151772 + Charlie1 DNA MER1_type 2495 2679 -82 32935 31 2 0 chr4 78176627 78181359 -124146988 - L1PA3 LINE L1 -1 6154 1416 348 215 0 0 chr4 78181359 78181424 -124146923 + Charlie1 DNA MER1_type 2696 2760 -1 629 287 5 41 chr4 78181510 78181705 -124146642 + L2 LINE L2 3117 3304 -9 363 299 131 67 chr4 78183652 78184026 -124144321 + L1MEd LINE L1 836 1233 -4886 28 48 0 0 chr4 78184038 78184080 -124144267 + AT_rich Low_complexity Low_complexity 1 42 0 486 294 33 11 chr4 78184179 78184359 -124143988 + HAL1 LINE L1 1521 1704 -803 1534 263 87 51 chr4 78184451 78185200 -124143147 + L1M3e LINE L1 -317 458 -6254 437 245 6 42 chr4 78185204 78185372 -124142975 + L1M3e LINE L1 2060 2217 -4516 324 231 0 2 chr4 78185367 78185440 -124142907 + L1M3e LINE L1 2125 2192 -4517 * 1196 141 45 0 chr4 78186577 78186775 -124141572 + Tigger6 DNA MER2_type 1059 1265 -332 1754 38 1 18 chr4 78186775 78187084 -124141263 - L1PA5 LINE L1 -690 5464 5159 5393 42 6 5 chr4 78187084 78187755 -124140592 + L1PA5 LINE L1 5477 6148 -6 1194 122 21 214 chr4 78187761 78188195 -124140152 + Tigger6 DNA MER2_type 1248 1597 0 236 235 0 0 chr4 78188229 78188280 -124140067 - L3 LINE CR1 -35 1542 1492 2115 122 0 0 chr4 78189870 78190158 -124138189 + AluSx SINE Alu 1 288 -24 1877 164 68 3 chr4 78190266 78190632 -124137715 - MLT1B LTR MaLR 0 390 1 2103 105 8 11 chr4 78190827 78191342 -124137005 - L1PA8A LINE L1 -562 5569 5054 1060 182 71 100 chr4 78191342 78191693 -124136654 - MER110A LTR ERV1 -127 341 1 24 0 0 0 chr4 78192122 78192146 -124136201 + AT_rich Low_complexity Low_complexity 1 24 0 1206 239 83 77 chr4 78192387 78192831 -124135516 - MER70B LTR ERVL -128 450 4 279 0 0 0 chr4 78193101 78193132 -124135215 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 682 287 54 46 chr4 78193813 78194074 -124134273 - MLT1H LTR MaLR -107 442 180 296 340 122 13 chr4 78194143 78194381 -124133966 - L3 LINE CR1 -904 673 410 478 213 191 58 chr4 78194384 78194745 -124133602 + L1ME4a LINE L1 5689 6097 -24 999 251 75 51 chr4 78195418 78195921 -124132426 + MLT1G1 LTR MaLR 1 531 -24 314 214 12 0 chr4 78196251 78196335 -124132012 + CT-rich Low_complexity Low_complexity 1 85 0 234 0 0 0 chr4 78196620 78196646 -124131701 + (TG)n Simple_repeat Simple_repeat 2 27 0 195 235 0 0 chr4 78197004 78197055 -124131292 + CT-rich Low_complexity Low_complexity 3 53 0 180 244 85 49 chr4 78197235 78197317 -124131030 - MIR3 SINE MIR -21 187 103 213 259 17 0 chr4 78198112 78198170 -124130177 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 1626 279 84 11 chr4 78198905 78199741 -124128606 - L2 LINE L2 -1 3312 2414 642 270 35 11 chr4 78200304 78200478 -124127869 + MIR SINE MIR 20 197 -65 189 0 0 0 chr4 78200537 78200558 -124127789 + (TG)n Simple_repeat Simple_repeat 2 22 0 2218 110 3 3 chr4 78200902 78201211 -124127136 - AluSc SINE Alu 0 309 1 306 313 31 0 chr4 78201442 78201538 -124126809 - L2 LINE L2 -1 3312 3214 453 0 0 0 chr4 78202750 78202804 -124125543 - L1PA3 LINE L1 -3 6152 6099 2191 74 3 7 chr4 78202945 78203241 -124125106 - L1PA7 LINE L1 -5 6149 5855 349 327 59 75 chr4 78205510 78205981 -124122366 + L2 LINE L2 2731 3196 -76 295 327 36 82 chr4 78205932 78206213 -124122134 - L2 LINE L2 -365 2949 2682 * 247 270 161 15 chr4 78206256 78206393 -124121954 + MLT1H LTR MaLR 1 157 -392 463 303 28 21 chr4 78206743 78206888 -124121459 - L2 LINE L2 -195 3077 2932 257 162 4 43 chr4 78208740 78208811 -124119536 + MIR SINE MIR 94 144 -64 26 0 0 0 chr4 78209081 78209107 -124119240 + AT_rich Low_complexity Low_complexity 1 26 0 354 138 0 0 chr4 78209190 78209248 -124119099 + (CAG)n Simple_repeat Simple_repeat 2 59 0 184 340 64 0 chr4 78209749 78209843 -124118504 - L2 LINE L2 -280 3033 2934 2033 194 39 27 chr4 78210548 78210961 -124117386 - MER47B DNA MER2_type 0 418 1 258 95 0 0 chr4 78211333 78211375 -124116972 + (TG)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr4 78211901 78211922 -124116425 + AT_rich Low_complexity Low_complexity 1 21 0 24 77 0 0 chr4 78212085 78212137 -124116210 + AT_rich Low_complexity Low_complexity 1 52 0 1480 226 114 19 chr4 78213279 78213690 -124114657 - MER31B LTR ERV1 -3 463 14 308 301 88 36 chr4 78214053 78214246 -124114101 - L2 LINE L2 -894 2420 2218 1679 170 4 0 chr4 78214365 78214641 -124113706 - AluJb SINE Alu -2 310 34 205 204 93 19 chr4 78215095 78215149 -124113198 + L2 LINE L2 3253 3310 -3 1494 146 122 0 chr4 78215934 78216220 -124112127 - AluJo SINE Alu 0 317 1 302 294 35 0 chr4 78216238 78216323 -124112024 + MIR SINE MIR 77 164 -98 183 320 0 0 chr4 78216329 78216379 -124111968 - L2 LINE L2 -2 3311 3262 2063 98 0 0 chr4 78216525 78216800 -124111547 + AluY SINE Alu 26 300 -11 22 35 0 0 chr4 78217330 78217359 -124110988 + AT_rich Low_complexity Low_complexity 1 29 0 183 129 0 0 chr4 78217554 78217585 -124110762 + (TTA)n Simple_repeat Simple_repeat 3 33 0 24 32 0 0 chr4 78217713 78217744 -124110603 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr4 78219080 78219105 -124109242 + AT_rich Low_complexity Low_complexity 1 25 0 2323 100 0 0 chr4 78219992 78220301 -124108046 + AluSx SINE Alu 1 309 -3 1635 168 47 32 chr4 78220461 78220800 -124107547 + MER2 DNA MER2_type 1 344 0 22 35 0 0 chr4 78221097 78221126 -124107221 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr4 78221905 78221945 -124106402 + AT_rich Low_complexity Low_complexity 1 40 0 217 195 271 51 chr4 78222317 78222435 -124105912 - MER5A DNA MER1_type -3 186 43 21 0 0 0 chr4 78222743 78222764 -124105583 + AT_rich Low_complexity Low_complexity 1 21 0 238 231 0 0 chr4 78223016 78223068 -124105279 - L2 LINE L2 0 3313 3262 22 0 0 0 chr4 78223073 78223095 -124105252 + AT_rich Low_complexity Low_complexity 1 22 0 506 293 0 0 chr4 78223259 78223375 -124104972 + L2 LINE L2 3152 3267 -5 368 224 0 95 chr4 78223852 78223968 -124104379 - LTR16A1 LTR ERVL -2 455 351 2349 103 0 0 chr4 78224126 78224438 -124103909 + AluSq SINE Alu 1 312 -1 491 286 56 17 chr4 78224446 78224733 -124103614 + L1M4c LINE L1 2025 2322 -4062 4112 138 14 25 chr4 78224756 78225489 -124102858 - L1PA16 LINE L1 -3 6163 5439 1340 127 0 15 chr4 78225489 78225686 -124102661 - AluSx SINE Alu -118 194 1 2160 213 17 58 chr4 78225686 78226534 -124101813 - L1M4 LINE L1 -1011 5135 4351 976 278 56 20 chr4 78226532 78226928 -124101419 + L1M4c LINE L1 2347 2756 -3626 * 2495 174 37 40 chr4 78226931 78227644 -124100703 + L1M2 LINE L1 5053 5785 -527 228 35 0 0 chr4 78227663 78227692 -124100655 + (CA)n Simple_repeat Simple_repeat 2 30 0 1032 223 62 5 chr4 78227692 78227916 -124100431 - MER8 DNA MER2_type -2 237 1 3654 250 55 46 chr4 78228133 78229253 -124099094 + L1MC/D LINE L1 11 1140 -5719 1606 308 7 9 chr4 78229245 78229709 -124098638 - L1PA13 LINE L1 -6324 463 1 * 25 31 0 0 chr4 78230274 78230306 -124098041 + AT_rich Low_complexity Low_complexity 1 32 0 356 318 65 24 chr4 78230351 78230890 -124097457 + L1MC/D LINE L1 4893 5458 -1499 233 315 41 0 chr4 78230911 78230984 -124097363 - MER94 DNA DNA -4 130 55 716 199 92 56 chr4 78231047 78231243 -124097104 + MIR SINE MIR 59 261 -1 695 329 53 25 chr4 78231402 78232253 -124096094 + L1MC/D LINE L1 5693 6575 -402 385 222 56 0 chr4 78232251 78232341 -124096006 + L1MA10 LINE L1 6238 6332 -2 * 246 156 0 0 chr4 78232361 78232406 -124095941 + (TA)n Simple_repeat Simple_repeat 1 45 0 3424 173 26 10 chr4 78232415 78233099 -124095248 - L1P LINE L1 -1306 4840 4146 1954 244 39 11 chr4 78233102 78233643 -124094704 + L1M4 LINE L1 3759 4314 -1832 563 305 50 56 chr4 78234356 78234697 -124093650 - MLT1H LTR MaLR -11 538 200 518 299 75 6 chr4 78234752 78234926 -124093421 - MIR SINE MIR -31 231 46 600 95 32 24 chr4 78236542 78236668 -124091679 + CT-rich Low_complexity Low_complexity 2 128 0 1188 184 61 61 chr4 78236671 78236856 -124091491 - AluJo SINE Alu 0 312 125 213 39 0 0 chr4 78236856 78236882 -124091465 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1188 184 61 61 chr4 78236882 78236989 -124091358 - AluJo SINE Alu -186 126 20 313 303 38 54 chr4 78237679 78237864 -124090483 + MIR SINE MIR 36 217 -45 27 62 0 0 chr4 78238823 78238871 -124089476 + AT_rich Low_complexity Low_complexity 1 48 0 479 313 58 25 chr4 78239070 78239348 -124088999 - MER89-int LTR ERV1 -4150 497 211 7981 45 2 1 chr4 78239451 78241206 -124087141 - L1PA5 LINE L1 -8 6146 4392 349 298 73 54 chr4 78241701 78242016 -124086331 - MER89-int LTR ERV1 -4779 2022 1702 909 132 0 22 chr4 78243290 78243426 -124084921 - AluSq/x SINE Alu -179 133 1 338 313 27 0 chr4 78243847 78243959 -124084388 - MER110 LTR ERV1 0 491 377 796 256 22 0 chr4 78243959 78244139 -124084208 - MER63A DNA MER1_type 0 210 27 249 270 27 0 chr4 78244142 78244216 -124084131 - MER110A LTR ERV1 -61 407 332 4022 97 24 7 chr4 78244216 78244796 -124083551 - L1PA8 LINE L1 -2 6170 5581 2292 103 0 0 chr4 78246289 78246589 -124081758 + AluSq SINE Alu 1 300 -13 21 71 0 0 chr4 78246854 78246896 -124081451 + AT_rich Low_complexity Low_complexity 1 42 0 21 71 0 0 chr4 78247468 78247510 -124080837 + AT_rich Low_complexity Low_complexity 1 42 0 24 53 0 0 chr4 78248810 78248848 -124079499 + AT_rich Low_complexity Low_complexity 1 38 0 1796 110 0 0 chr4 78249239 78249476 -124078871 - AluSc SINE Alu 0 309 73 213 222 22 0 chr4 78249684 78249729 -124078618 - MIR SINE MIR -82 126 81 2355 73 3 0 chr4 78249921 78250209 -124078138 - AluSc SINE Alu -20 289 1 237 303 40 40 chr4 78250784 78250883 -124077464 + MIR3 SINE MIR 81 179 -29 225 340 20 10 chr4 78251923 78252023 -124076324 - MIR SINE MIR -12 250 150 425 261 65 71 chr4 78252036 78252220 -124076127 + MIR SINE MIR 11 193 -69 453 320 0 20 chr4 78252241 78252388 -124075959 - MIR SINE MIR -104 158 15 482 284 106 39 chr4 78252506 78252714 -124075633 + MIR SINE MIR 40 261 -1 3081 146 26 0 chr4 78254446 78254945 -124073402 + MER41E LTR ERV1 1 512 0 579 298 45 65 chr4 78254973 78255265 -124073082 + MLT1K LTR MaLR 226 511 -77 22 0 0 0 chr4 78256022 78256044 -124072303 + AT_rich Low_complexity Low_complexity 1 22 0 218 227 0 0 chr4 78257502 78257546 -124070801 + (TA)n Simple_repeat Simple_repeat 2 45 0 1682 192 0 7 chr4 78257582 78257879 -124070468 - AluJo SINE Alu -17 295 1 21 36 0 0 chr4 78258201 78258229 -124070118 + AT_rich Low_complexity Low_complexity 1 28 0 458 263 130 23 chr4 78259961 78260262 -124068085 + L1MEc LINE L1 981 1313 -4892 340 299 26 2 chr4 78260364 78260506 -124067841 + L1MEc LINE L1 1516 1660 -916 21 0 0 0 chr4 78260726 78260747 -124067600 + AT_rich Low_complexity Low_complexity 1 21 0 1325 191 8 23 chr4 78260818 78261074 -124067273 + AluJo SINE Alu 8 259 -53 3347 106 10 14 chr4 78261077 78261566 -124066781 + LTR15 LTR ERV1 1 487 -6 1947 143 140 11 chr4 78261862 78262241 -124066106 - MSTA LTR MaLR 0 428 1 684 269 40 6 chr4 78262648 78262823 -124065524 + MIR SINE MIR 6 186 -76 290 303 0 0 chr4 78263067 78263143 -124065204 + GA-rich Low_complexity Low_complexity 3 78 0 351 308 50 18 chr4 78263480 78263733 -124064614 - L1M LINE L1 -748 5398 5156 1775 194 7 0 chr4 78264136 78264429 -124063918 + AluSx SINE Alu 1 295 -17 518 280 19 13 chr4 78264694 78264851 -124063496 - MER52A LTR ERV1 0 1755 1598 1010 266 17 99 chr4 78264853 78265267 -124063080 - MER52A LTR ERV1 -284 1471 1092 863 214 50 96 chr4 78265252 78265575 -124062772 - MER52A LTR ERV1 -785 970 663 * 8249 108 25 16 chr4 78265580 78266808 -124061539 - MER52-int LTR ERV1 0 7091 5853 275 333 23 6 chr4 78266822 78266996 -124061351 - L1MC/D LINE L1 -1924 5884 5708 21 0 0 0 chr4 78267616 78267637 -124060710 + AT_rich Low_complexity Low_complexity 1 21 0 1899 150 7 7 chr4 78267978 78268272 -124060075 + AluSx SINE Alu 1 294 -18 1647 218 15 30 chr4 78268319 78268713 -124059634 - MLT1B LTR MaLR 0 390 3 180 158 0 0 chr4 78269887 78269925 -124058422 + (TG)n Simple_repeat Simple_repeat 2 39 0 315 359 106 0 chr4 78269951 78270121 -124058226 - MIR SINE MIR -19 243 56 7139 80 0 10 chr4 78271269 78272841 -124055506 - L1PA7 LINE L1 -228 5926 4372 1358 60 0 0 chr4 78272841 78273008 -124055339 + L1PA7 LINE L1 5955 6121 -33 2012 256 40 20 chr4 78273037 78273642 -124054705 + L1MCb LINE L1 3 619 -5426 4350 162 43 41 chr4 78273658 78273916 -124054431 - MER4D LTR ERV1 -2 901 645 2055 192 49 5 chr4 78273916 78274322 -124054025 - MSTA LTR MaLR -4 424 1 8661 179 22 18 chr4 78274322 78275594 -124052753 - MSTA-int LTR MaLR 0 1651 368 2112 123 10 3 chr4 78275594 78275894 -124052453 + AluSq SINE Alu 1 302 -11 8661 179 22 18 chr4 78275894 78276264 -124052083 - MSTA-int LTR MaLR -1283 368 1 1776 234 54 15 chr4 78276264 78276674 -124051673 - MSTB LTR MaLR 0 426 1 4350 162 43 41 chr4 78276674 78277309 -124051038 - MER4D LTR ERV1 -257 646 4 439 313 0 31 chr4 78277313 78277473 -124050874 + L1MCb LINE L1 636 790 -5255 2984 234 39 29 chr4 78277520 78278574 -124049773 + L1MCb LINE L1 896 2162 -4583 1736 238 29 32 chr4 78278609 78279202 -124049145 + L1MCb LINE L1 2818 3408 -3156 484 314 145 35 chr4 78279214 78279532 -124048815 - MLT1H LTR MaLR -114 435 83 255 221 29 115 chr4 78279572 78279676 -124048671 + MIR SINE MIR 146 240 -22 2827 32 3 0 chr4 78279914 78280255 -124048092 + L1PA2 LINE L1 5813 6154 -1 840 276 71 0 chr4 78280444 78280669 -124047678 - MIR SINE MIR -3 259 19 210 311 28 57 chr4 78280724 78280830 -124047517 - L2 LINE L2 -2 3270 3168 332 351 117 1 chr4 78281977 78282189 -124046158 + MIR SINE MIR 18 249 -13 21 0 0 0 chr4 78283173 78283194 -124045153 + AT_rich Low_complexity Low_complexity 1 21 0 1148 165 99 132 chr4 78284373 78285013 -124043334 - MER4C LTR ERV1 -3 462 1 305 238 306 12 chr4 78285209 78285369 -124042978 - MIR SINE MIR -3 259 53 2068 125 3 13 chr4 78286102 78286407 -124041940 - AluSp SINE Alu -11 302 1 25 0 0 0 chr4 78286409 78286434 -124041913 + AT_rich Low_complexity Low_complexity 1 25 0 475 314 135 36 chr4 78286472 78286746 -124041601 - L2 LINE L2 0 3313 3013 407 337 1 43 chr4 78289131 78289269 -124039078 - MIR3 SINE MIR -39 169 36 348 266 19 54 chr4 78289315 78289450 -124038897 + MER5B DNA MER1_type 55 175 -3 671 288 63 0 chr4 78290718 78290909 -124037438 + MIR SINE MIR 2 204 -58 1728 176 10 19 chr4 78290911 78291218 -124037129 - AluJb SINE Alu -8 304 1 2099 125 3 0 chr4 78291845 78292134 -124036213 + AluSq SINE Alu 1 290 -23 23 33 0 0 chr4 78292208 78292238 -124036109 + AT_rich Low_complexity Low_complexity 1 30 0 306 0 0 0 chr4 78292900 78292934 -124035413 + (TG)n Simple_repeat Simple_repeat 1 34 0 518 194 216 14 chr4 78294047 78294186 -124034161 - MIR SINE MIR -14 248 82 2593 36 3 0 chr4 78294227 78294531 -124033816 - AluY SINE Alu -6 305 1 342 280 75 70 chr4 78298636 78298836 -124029511 - MIR SINE MIR -6 256 56 1982 111 10 93 chr4 78299899 78300297 -124028050 - L1PB3 LINE L1 -7 6147 5783 233 230 44 46 chr4 78300529 78300636 -124027711 + MIR SINE MIR 98 152 -56 245 265 36 48 chr4 78300704 78300787 -124027560 - MIR SINE MIR -70 192 111 24 53 0 0 chr4 78301162 78301200 -124027147 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr4 78301310 78301331 -124027016 + AT_rich Low_complexity Low_complexity 1 21 0 324 127 0 0 chr4 78301368 78301423 -124026924 + (GA)n Simple_repeat Simple_repeat 1 55 0 861 191 40 6 chr4 78301661 78301834 -124026513 - MER20 DNA MER1_type 0 219 41 22 0 0 0 chr4 78301927 78301949 -124026398 + AT_rich Low_complexity Low_complexity 1 22 0 306 313 31 0 chr4 78302689 78302785 -124025562 + L2 LINE L2 3210 3308 -5 1858 99 11 42 chr4 78303541 78303825 -124024522 - AluSc SINE Alu -5 304 30 550 209 12 0 chr4 78304328 78304491 -124023856 + (TA)n Simple_repeat Simple_repeat 1 168 -6 207 0 0 0 chr4 78304491 78304514 -124023833 + (CA)n Simple_repeat Simple_repeat 2 24 0 550 209 12 0 chr4 78304514 78304522 -124023825 + (TA)n Simple_repeat Simple_repeat 168 174 0 710 232 32 0 chr4 78305132 78305287 -124023060 + FRAM SINE Alu 2 161 -5 1595 129 7 19 chr4 78305968 78306239 -124022108 - AluSc SINE Alu -35 274 7 967 153 33 38 chr4 78306240 78306423 -124021924 - MER2 DNA MER2_type -163 182 1 202 264 38 0 chr4 78306815 78306868 -124021479 - MIR3 SINE MIR -22 186 132 25 0 0 0 chr4 78307822 78307847 -124020500 + AT_rich Low_complexity Low_complexity 1 25 0 288 0 0 0 chr4 78308159 78308191 -124020156 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 1649 111 15 50 chr4 78308191 78308452 -124019895 - AluSc SINE Alu -28 281 30 550 209 12 0 chr4 78308955 78309118 -124019229 + (TA)n Simple_repeat Simple_repeat 1 168 -6 207 0 0 0 chr4 78309118 78309141 -124019206 + (CA)n Simple_repeat Simple_repeat 2 24 0 550 209 12 0 chr4 78309141 78309149 -124019198 + (TA)n Simple_repeat Simple_repeat 168 174 0 710 232 32 0 chr4 78309759 78309914 -124018433 + FRAM SINE Alu 2 161 -5 2508 47 0 34 chr4 78310674 78310996 -124017351 - AluY SINE Alu 0 311 1 574 256 44 39 chr4 78312794 78312945 -124015402 + MIR SINE MIR 70 224 -38 1720 124 57 88 chr4 78312945 78313332 -124015015 - THE1C LTR MaLR 0 375 1 574 256 44 39 chr4 78313332 78313360 -124014987 + MIR SINE MIR 224 250 -12 205 204 0 23 chr4 78313922 78313966 -124014381 + (CTA)n Simple_repeat Simple_repeat 1 43 0 186 143 0 0 chr4 78315265 78315300 -124013047 + (TC)n Simple_repeat Simple_repeat 2 36 0 312 320 60 10 chr4 78315344 78315444 -124012903 - L2 LINE L2 -5 3267 3163 1356 143 34 13 chr4 78316547 78316785 -124011562 - L1PB4 LINE L1 -9 6147 5905 2416 66 0 28 chr4 78317062 78317381 -124010966 + AluY SINE Alu 1 310 -1 2023 109 16 16 chr4 78317390 78317702 -124010645 + AluSx SINE Alu 1 312 0 675 162 59 7 chr4 78318289 78318425 -124009922 + L1PA16 LINE L1 6015 6157 -9 242 286 46 91 chr4 78318452 78318627 -124009720 + MIR SINE MIR 40 206 -56 257 399 22 0 chr4 78319181 78319319 -124009028 - MIR3 SINE MIR -2 206 66 480 269 148 11 chr4 78319489 78319671 -124008676 + MIR SINE MIR 56 262 0 236 264 0 0 chr4 78319821 78319874 -124008473 - MER103 DNA DNA -47 119 67 22 0 0 0 chr4 78321107 78321129 -124007218 + AT_rich Low_complexity Low_complexity 1 22 0 247 247 37 0 chr4 78321796 78321877 -124006470 + (CATATA)n Simple_repeat Simple_repeat 4 87 0 1120 170 32 30 chr4 78322048 78322160 -124006187 - MER2 DNA MER2_type 0 345 235 2216 93 3 3 chr4 78322160 78322451 -124005896 - AluSc SINE Alu -12 297 7 1120 170 32 30 chr4 78322451 78322635 -124005712 - MER2 DNA MER2_type -110 235 1 202 264 38 0 chr4 78323027 78323080 -124005267 - MIR3 SINE MIR -22 186 132 25 0 0 0 chr4 78324034 78324059 -124004288 + AT_rich Low_complexity Low_complexity 1 25 0 288 0 0 0 chr4 78324371 78324403 -124003944 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 2164 106 0 0 chr4 78324403 78324685 -124003662 - AluSg SINE Alu -28 282 1 24 0 0 0 chr4 78324694 78324718 -124003629 + AT_rich Low_complexity Low_complexity 1 24 0 266 337 12 0 chr4 78325015 78325101 -124003246 - MIR SINE MIR -92 116 30 938 301 94 16 chr4 78325281 78325707 -124002640 + L2 LINE L2 1994 2452 -862 214 428 44 11 chr4 78327118 78327298 -124001049 - L2 LINE L2 -221 3051 2866 1590 234 50 53 chr4 78327432 78327937 -124000410 + MLT1D LTR MaLR 1 503 -2 186 363 92 45 chr4 78327972 78328264 -124000083 - L2 LINE L2 -637 2677 2372 195 267 23 58 chr4 78328400 78328486 -123999861 - MIR SINE MIR -147 115 33 288 241 146 29 chr4 78328762 78328899 -123999448 - L2 LINE L2 -1 3312 3160 438 248 67 33 chr4 78328931 78329092 -123999255 - MIR SINE MIR -44 218 53 478 346 156 32 chr4 78329179 78329350 -123998997 - L2 LINE L2 -361 2953 2805 1900 23 0 0 chr4 78329350 78329600 -123998747 + L1PA4 LINE L1 5922 6171 0 478 346 156 32 chr4 78329600 78329829 -123998518 - L2 LINE L2 -509 2805 2500 2050 104 0 14 chr4 78330354 78330686 -123997661 - AluSx SINE Alu 0 328 1 322 317 91 48 chr4 78331662 78331993 -123996354 + L1M2 LINE L1 1027 1371 -5478 538 305 80 32 chr4 78334717 78334966 -123993381 + MIR SINE MIR 2 262 0 239 287 270 9 chr4 78335361 78335476 -123992871 - MER5A DNA MER1_type 0 189 45 200 264 0 28 chr4 78335572 78335644 -123992703 + CT-rich Low_complexity Low_complexity 1 70 0 328 249 166 17 chr4 78338271 78338452 -123989895 - MER46C DNA MER2_type 0 338 131 2379 191 78 57 chr4 78338815 78339581 -123988766 - MER21B LTR ERV1 -54 877 12 219 275 0 100 chr4 78339650 78339730 -123988617 - MIR SINE MIR -73 189 118 201 281 178 14 chr4 78340191 78340337 -123988010 - MIR3 SINE MIR -18 190 21 234 294 39 59 chr4 78340357 78340459 -123987888 - MIR SINE MIR -110 152 53 21 57 0 0 chr4 78341680 78341715 -123986632 + AT_rich Low_complexity Low_complexity 1 35 0 282 214 111 17 chr4 78342303 78342420 -123985927 - L1ME4a LINE L1 -195 5926 5799 360 43 75 21 chr4 78342425 78342519 -123985828 + (TA)n Simple_repeat Simple_repeat 2 100 0 2245 101 0 3 chr4 78342519 78342806 -123985541 - AluSg SINE Alu -24 286 1 356 307 36 0 chr4 78342831 78342971 -123985376 - L1ME4a LINE L1 -361 5760 5616 24 77 0 0 chr4 78343011 78343063 -123985284 + AT_rich Low_complexity Low_complexity 1 52 0 2012 231 112 23 chr4 78343147 78343938 -123984409 - L1MC4 LINE L1 -148 7894 7006 612 261 79 18 chr4 78343997 78344162 -123984185 + MIR SINE MIR 88 262 0 22 0 0 0 chr4 78344203 78344225 -123984122 + AT_rich Low_complexity Low_complexity 1 22 0 1475 73 18 5 chr4 78344436 78344654 -123983693 - pTR5 LTR ERV1 -2046 392 172 306 234 11 0 chr4 78344657 78344751 -123983596 - LTR30 LTR ERV1 -80 642 548 4004 137 30 25 chr4 78344753 78345719 -123982628 - pTR5 LTR ERV1 -411 2027 741 230 305 0 9 chr4 78345986 78346091 -123982256 + L1ME4a LINE L1 5659 5762 -359 282 221 12 12 chr4 78346314 78346400 -123981947 + L1ME4a LINE L1 5816 5901 -220 415 286 100 17 chr4 78346437 78346678 -123981669 - LTR16B LTR ERVL -65 399 139 21 0 0 0 chr4 78346928 78346949 -123981398 + AT_rich Low_complexity Low_complexity 1 21 0 1666 137 52 36 chr4 78347012 78347332 -123981015 - AluJo SINE Alu 0 467 154 221 0 0 33 chr4 78347332 78347362 -123980985 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2035 141 0 0 chr4 78347362 78347646 -123980701 - AluSx SINE Alu -28 284 1 1666 137 52 36 chr4 78347646 78347786 -123980561 - AluJo SINE Alu -312 155 1 258 202 67 22 chr4 78348419 78348508 -123979839 - L1ME LINE L1 -304 5817 5725 208 227 0 0 chr4 78349039 78349083 -123979264 - MER5C DNA MER1_type -203 121 78 4050 163 86 10 chr4 78350265 78350461 -123977886 + MER6 DNA MER2_type 3 183 -682 234 91 0 0 chr4 78350461 78350494 -123977853 + (TG)n Simple_repeat Simple_repeat 1 33 0 4050 163 86 10 chr4 78350494 78351099 -123977248 + MER6 DNA MER2_type 183 865 0 867 276 43 30 chr4 78351330 78351725 -123976622 - MER90 LTR ERV1 -99 476 77 411 270 72 23 chr4 78351838 78352118 -123976229 - MER90 LTR ERV1 -244 370 35 215 292 67 45 chr4 78352147 78352236 -123976111 - L2 LINE L2 0 3272 3182 495 312 48 21 chr4 78352249 78352435 -123975912 + MIR SINE MIR 7 197 -65 2060 135 0 10 chr4 78352617 78352921 -123975426 + AluSg SINE Alu 1 301 -9 2223 86 3 13 chr4 78353089 78353423 -123974924 + AluSp SINE Alu 1 313 0 475 299 89 0 chr4 78355559 78355715 -123972632 + MER5B DNA MER1_type 3 172 -6 711 249 20 3 chr4 78355715 78355878 -123972469 - MER5B DNA MER1_type 0 189 8 23 33 0 67 chr4 78356079 78356107 -123972240 + AT_rich Low_complexity Low_complexity 1 24 -32 1842 158 7 3 chr4 78356107 78356404 -123971943 - AluJo SINE Alu -14 298 1 23 33 0 67 chr4 78356404 78356435 -123971912 + AT_rich Low_complexity Low_complexity 24 56 0 2313 92 3 7 chr4 78357797 78358103 -123970244 + AluY SINE Alu 1 305 -6 467 320 52 23 chr4 78359466 78359638 -123968709 + MER5A DNA MER1_type 7 183 -6 489 243 0 0 chr4 78359801 78359945 -123968402 + (ATG)n Simple_repeat Simple_repeat 1 144 0 1314 67 0 0 chr4 78359987 78360165 -123968182 + (CCTTG)n Simple_repeat Simple_repeat 1 178 0 1625 127 0 17 chr4 78360165 78360401 -123967946 - AluSq SINE Alu -72 241 10 880 241 168 37 chr4 78360403 78360784 -123967563 + L2 LINE L2 2881 3311 -2 427 338 103 40 chr4 78360962 78361542 -123966805 + L2 LINE L2 2630 3312 -1 288 0 0 0 chr4 78362139 78362171 -123966176 + (TA)n Simple_repeat Simple_repeat 1 32 0 201 255 10 92 chr4 78363034 78363132 -123965215 - MER5A DNA MER1_type -72 117 28 291 366 32 98 chr4 78363238 78363710 -123964637 - L2 LINE L2 -2 3270 2830 256 288 173 14 chr4 78363780 78363919 -123964428 - L2 LINE L2 -475 2839 2679 433 96 0 149 chr4 78364226 78364320 -123964027 - MADE1 DNA Mariner 0 80 1 3218 139 2 62 chr4 78366097 78366658 -123961689 - MER1A DNA MER1_type 0 527 1 616 308 142 27 chr4 78366683 78367050 -123961297 + L2 LINE L2 2905 3313 0 2295 90 0 0 chr4 78367100 78367390 -123960957 + AluSq SINE Alu 1 290 -23 291 277 62 54 chr4 78367810 78367940 -123960407 - MIR SINE MIR -79 183 53 403 275 6 6 chr4 78368199 78368370 -123959977 + GA-rich Low_complexity Low_complexity 4 174 0 346 331 32 8 chr4 78369030 78369154 -123959193 - MIR SINE MIR -122 140 14 22 35 0 0 chr4 78370548 78370577 -123957770 + AT_rich Low_complexity Low_complexity 1 29 0 540 244 62 31 chr4 78370590 78370815 -123957532 + HAL1 LINE L1 1428 1659 -848 185 0 40 0 chr4 78370926 78370951 -123957396 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 29 0 0 0 chr4 78371122 78371151 -123957196 + AT_rich Low_complexity Low_complexity 1 29 0 328 306 18 59 chr4 78371177 78371347 -123957000 + HAL1b LINE L1 746 908 -440 1676 201 3 10 chr4 78371434 78371748 -123956599 + AluSx SINE Alu 1 312 0 204 67 0 0 chr4 78371852 78371882 -123956465 + (TA)n Simple_repeat Simple_repeat 1 30 0 356 284 105 126 chr4 78373062 78373396 -123954951 + L2 LINE L2 2942 3268 -4 514 293 101 5 chr4 78374015 78374213 -123954134 + MIR SINE MIR 2 218 -44 198 207 0 86 chr4 78374739 78374797 -123953550 - L2 LINE L2 0 3313 3261 2328 181 152 0 chr4 78374803 78375335 -123953012 + MER90 LTR ERV1 1 613 -1 820 259 50 93 chr4 78375383 78375858 -123952489 - MLT1J LTR MaLR -3 508 54 408 282 7 54 chr4 78376181 78376330 -123952017 - MIR SINE MIR -17 245 104 226 254 0 14 chr4 78376712 78376783 -123951564 + (TA)n Simple_repeat Simple_repeat 2 71 0 25 0 0 0 chr4 78376889 78376914 -123951433 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr4 78377329 78377360 -123950987 + AT_rich Low_complexity Low_complexity 1 31 0 2212 108 0 10 chr4 78378210 78378517 -123949830 + AluSg SINE Alu 1 304 -6 1820 136 66 0 chr4 78378652 78378924 -123949423 + AluSx SINE Alu 3 292 -20 296 295 67 54 chr4 78379552 78379701 -123948646 - MER5A DNA MER1_type -14 175 25 282 276 182 10 chr4 78379846 78380049 -123948298 + L2 LINE L2 3075 3312 -1 1104 158 113 42 chr4 78380089 78380520 -123947827 - MER51A LTR ERV1 0 634 1 1729 186 0 3 chr4 78380521 78380838 -123947509 - MER51A-int LTR ERV1 0 7816 7501 361 51 51 0 chr4 78380927 78380986 -123947361 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 1662 303 52 58 chr4 78381179 78384185 -123944162 - MER51A-int LTR ERV1 -1146 4084 2972 260 218 0 0 chr4 78384341 78384396 -123943951 - MER51A-int LTR ERV1 -5732 2694 2640 293 260 36 36 chr4 78385016 78385256 -123943091 - MER51A-int LTR ERV1 -5432 2324 1647 404 247 0 0 chr4 78385768 78385861 -123942486 - MER51A-int LTR ERV1 -5051 1822 1537 421 264 44 39 chr4 78386003 78386185 -123942162 - MER51A-int LTR ERV1 -6975 841 659 315 160 53 13 chr4 78386195 78386270 -123942077 - MER51A-int LTR ERV1 -2482 3464 3387 251 111 0 143 chr4 78386280 78386343 -123942004 - MER51A-int LTR ERV1 -2683 3993 3940 1927 171 165 58 chr4 78386361 78386858 -123941489 - MER51A-int LTR ERV1 -7264 552 3 1248 160 31 56 chr4 78386860 78387290 -123941057 - MER51A LTR ERV1 0 634 1 788 197 0 0 chr4 78387401 78387543 -123940804 + Tigger2 DNA MER2_type 2 143 -2575 * 1992 161 78 3 chr4 78387542 78387928 -123940419 + Tigger2 DNA MER2_type 2304 2718 0 1929 130 0 24 chr4 78388017 78388310 -123940037 - AluSx SINE Alu -26 286 1 22 56 0 0 chr4 78388334 78388370 -123939977 + AT_rich Low_complexity Low_complexity 1 36 0 345 328 157 18 chr4 78389084 78389313 -123939034 - MIR SINE MIR -1 261 1 509 189 70 21 chr4 78389453 78389596 -123938751 + L1MA8 LINE L1 6142 6291 0 213 274 5 16 chr4 78389715 78389795 -123938552 + MIR SINE MIR 89 134 -74 2050 104 0 14 chr4 78390264 78390602 -123937745 - AluSx SINE Alu 0 334 1 327 292 143 77 chr4 78391590 78391926 -123936421 + L1M2 LINE L1 834 1191 -5658 270 273 10 91 chr4 78392167 78392266 -123936081 - MIR3 SINE MIR -25 183 93 203 122 0 24 chr4 78392483 78392524 -123935823 + (TAA)n Simple_repeat Simple_repeat 1 40 0 28 61 0 0 chr4 78392542 78392591 -123935756 + AT_rich Low_complexity Low_complexity 1 49 0 501 270 72 63 chr4 78393459 78393696 -123934651 - MIR SINE MIR -19 243 5 478 171 122 153 chr4 78395669 78395793 -123932554 - MER58C DNA MER1_type -2205 215 99 1769 143 0 31 chr4 78395793 78396099 -123932248 + AluJb SINE Alu 5 301 0 478 171 122 153 chr4 78396099 78396195 -123932152 - MER58C DNA MER1_type -2321 99 1 264 59 0 0 chr4 78396231 78396265 -123932082 + (TC)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr4 78396977 78396998 -123931349 + AT_rich Low_complexity Low_complexity 1 21 0 218 267 10 109 chr4 78399912 78399950 -123928397 - MER5A DNA MER1_type -3 186 146 2073 107 9 50 chr4 78399950 78400267 -123928080 + AluSq SINE Alu 1 304 -9 286 267 228 10 chr4 78400267 78400368 -123927979 + MER5A DNA MER1_type 44 166 -23 266 26 53 0 chr4 78401039 78401077 -123927270 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 24 0 0 0 chr4 78401263 78401287 -123927060 + AT_rich Low_complexity Low_complexity 1 24 0 450 353 18 18 chr4 78402148 78402318 -123926029 - MER5B DNA MER1_type 0 178 9 184 325 0 39 chr4 78402279 78402356 -123925991 - L3 LINE CR1 -658 919 846 * 347 277 54 103 chr4 78402360 78402584 -123925763 - L2 LINE L2 -68 3204 2992 929 206 0 0 chr4 78402958 78403133 -123925214 + FAM SINE Alu 1 175 0 296 311 160 10 chr4 78403467 78403673 -123924674 - L2 LINE L2 -904 2410 2174 649 214 183 22 chr4 78403837 78404061 -123924286 - MIR SINE MIR 0 262 3 282 260 104 0 chr4 78404979 78405056 -123923291 + L2 LINE L2 3117 3201 -71 4330 161 12 43 chr4 78405404 78406710 -123921637 - L1MA5A LINE L1 -221 6076 4814 306 292 28 28 chr4 78406780 78406924 -123921423 - MLT1L LTR MaLR -50 565 422 450 284 110 54 chr4 78407150 78408151 -123920196 + L1ME2 LINE L1 3603 4659 -1487 363 335 79 57 chr4 78408320 78408940 -123919407 + L1ME2 LINE L1 4752 5385 -761 394 337 88 28 chr4 78408945 78409126 -123919221 - MER91A DNA MER1_type -3 193 2 438 291 143 20 chr4 78409126 78409525 -123918822 + L1ME2 LINE L1 5379 5826 -338 222 270 68 0 chr4 78409951 78410025 -123918322 - L2 LINE L2 -223 3049 2971 380 326 99 27 chr4 78410074 78410368 -123917979 - L2 LINE L2 -462 2852 2538 201 328 78 23 chr4 78410351 78410479 -123917868 + L3 LINE CR1 1179 1313 -264 * 197 300 33 0 chr4 78410657 78410717 -123917630 + L3 LINE CR1 1493 1554 -23 546 121 12 0 chr4 78410759 78410842 -123917505 - L1 LINE L1 -1223 4923 4840 338 202 29 29 chr4 78411083 78411187 -123917160 - HAL1b LINE L1 -54 1294 1191 281 244 12 49 chr4 78411491 78411573 -123916774 - MIR SINE MIR -18 244 166 186 281 181 12 chr4 78413252 78413412 -123914935 + MIR3 SINE MIR 4 190 -18 223 275 0 100 chr4 78413873 78413953 -123914394 + MIR SINE MIR 118 189 -73 2558 190 78 62 chr4 78414022 78414788 -123913559 + MER21B LTR ERV1 12 877 -54 382 249 166 17 chr4 78415151 78415332 -123913015 + MER46C DNA MER2_type 131 338 0 200 264 0 28 chr4 78417968 78418040 -123910307 + GA-rich Low_complexity Low_complexity 1 70 0 236 287 270 9 chr4 78418136 78418251 -123910096 + MER5A DNA MER1_type 45 189 0 538 305 80 32 chr4 78418646 78418895 -123909452 - MIR SINE MIR 0 262 2 2434 180 65 14 chr4 78422273 78422824 -123905523 - MER45B DNA AcHobo 0 1040 462 2205 117 7 3 chr4 78422988 78423297 -123905050 + AluSq SINE Alu 1 310 -3 468 286 58 44 chr4 78423576 78423782 -123904565 - MIR SINE MIR 0 262 54 279 353 115 24 chr4 78424061 78424356 -123903991 + MER102b DNA MER1_type 1 322 -19 24 77 0 0 chr4 78424440 78424492 -123903855 + AT_rich Low_complexity Low_complexity 1 52 0 265 363 0 32 chr4 78424644 78424768 -123903579 - L2 LINE L2 -11 3261 3142 326 308 217 12 chr4 78424856 78425178 -123903169 - L2 LINE L2 -121 3192 2805 317 321 121 14 chr4 78426006 78426146 -123902201 + MER5A DNA MER1_type 35 189 0 326 300 67 25 chr4 78426185 78426305 -123902042 - L2 LINE L2 -7 3265 3141 450 287 66 24 chr4 78426480 78426647 -123901700 + MIR3 SINE MIR 14 187 -21 810 250 66 0 chr4 78427474 78427670 -123900677 + MER63A DNA MER1_type 1 209 -1 2009 171 49 46 chr4 78427786 78428177 -123900170 - MSTB LTR MaLR -34 392 1 854 264 59 14 chr4 78429157 78429377 -123898970 + MIR SINE MIR 31 260 -2 1165 113 131 0 chr4 78432442 78432663 -123895684 + L1MA4 LINE L1 6046 6295 -5 215 241 0 48 chr4 78433886 78433969 -123894378 + (TA)n Simple_repeat Simple_repeat 1 79 0 349 179 11 11 chr4 78434696 78434791 -123893556 + (TA)n Simple_repeat Simple_repeat 1 95 0 22 56 0 0 chr4 78435687 78435723 -123892624 + AT_rich Low_complexity Low_complexity 1 36 0 439 270 30 100 chr4 78435878 78436108 -123892239 - MIR SINE MIR -34 228 15 578 296 43 43 chr4 78436504 78436734 -123891613 + MIR SINE MIR 18 247 -15 417 253 163 51 chr4 78436821 78437076 -123891271 + L2 LINE L2 2796 3076 -196 2144 140 25 15 chr4 78437511 78437907 -123890440 + LTR24C LTR ERV1 1 382 -194 456 156 211 0 chr4 78437918 78438027 -123890320 + LTR24C LTR ERV1 504 635 0 21 36 0 0 chr4 78438881 78438909 -123889438 + AT_rich Low_complexity Low_complexity 1 28 0 203 292 53 58 chr4 78439078 78439153 -123889194 + L2 LINE L2 2140 2214 -1100 2337 168 52 2 chr4 78439153 78439557 -123888790 + MSTB LTR MaLR 1 424 -2 203 292 53 58 chr4 78439557 78439707 -123888640 + L2 LINE L2 2214 2364 -950 265 314 114 0 chr4 78440033 78440138 -123888209 - MIR SINE MIR -84 178 62 2740 185 36 78 chr4 78440195 78440940 -123887407 - L1MA9 LINE L1 -121 7212 6499 2137 189 63 13 chr4 78440929 78441434 -123886913 - L1MA9 LINE L1 -1437 5730 5193 * 2351 67 7 0 chr4 78441434 78441733 -123886614 - AluY SINE Alu -10 301 1 2137 189 63 13 chr4 78441733 78441783 -123886564 - L1MA9 LINE L1 -1974 5193 5147 310 321 0 45 chr4 78441785 78441897 -123886450 + L1MC4 LINE L1 6614 6720 -1322 693 214 0 0 chr4 78441899 78442058 -123886289 + (CA)n Simple_repeat Simple_repeat 2 160 0 1651 155 10 58 chr4 78442064 78442374 -123885973 - AluSx SINE Alu -17 295 1 6948 254 55 44 chr4 78442381 78447764 -123880583 - L1MA9 LINE L1 -2023 5144 1 842 189 42 5 chr4 78448387 78448599 -123879748 - Charlie5 DNA MER1_type -28 2584 2365 1997 186 6 11 chr4 78449021 78449387 -123878960 - MLT1A1 LTR MaLR 0 365 2 2500 213 14 84 chr4 78449388 78450028 -123878319 - MLT1A1-int LTR MaLR 0 1735 1141 340 298 30 46 chr4 78450557 78450688 -123877659 + L2 LINE L2 3175 3303 -10 1860 143 23 74 chr4 78450906 78451165 -123877182 + L1MA4 LINE L1 5036 5307 -984 1137 165 10 0 chr4 78451165 78451371 -123876976 + L1MA4 LINE L1 6074 6281 -19 1860 143 23 74 chr4 78451371 78451716 -123876631 + L1MA4 LINE L1 5307 5609 -682 13926 160 20 29 chr4 78451726 78454355 -123873992 + L1P LINE L1 11 2617 -3529 21388 84 11 0 chr4 78454486 78458274 -123870073 + L1PA6 LINE L1 2340 6145 -9 24 0 0 0 chr4 78458430 78458454 -123869893 + AT_rich Low_complexity Low_complexity 1 24 0 274 341 23 0 chr4 78458490 78458578 -123869769 + L2 LINE L2 3189 3278 -35 190 267 0 0 chr4 78458608 78458653 -123869694 - MIR SINE MIR -143 119 75 603 117 0 109 chr4 78458995 78459132 -123869215 + L1M2 LINE L1 5586 5707 -593 244 215 25 0 chr4 78459151 78459230 -123869117 + L1MA8 LINE L1 6209 6289 -2 207 395 35 0 chr4 78459269 78459383 -123868964 - L2 LINE L2 -50 3263 3146 266 313 21 42 chr4 78459488 78459584 -123868763 + MIR SINE MIR 33 126 -136 905 150 46 0 chr4 78460317 78460470 -123867877 - L1P4 LINE L1 -485 5681 5522 827 86 26 0 chr4 78460480 78460596 -123867751 - AluSc SINE Alu -6 303 185 248 308 51 20 chr4 78460764 78460959 -123867388 + L1M4 LINE L1 2723 2923 -3223 277 274 93 15 chr4 78461059 78461263 -123867084 + L1M4 LINE L1 3604 3823 -2323 815 217 6 6 chr4 78461291 78461457 -123866890 + AluJb SINE Alu 134 299 -13 276 204 228 12 chr4 78461679 78461846 -123866501 + L1M4 LINE L1 4145 4347 -1799 2141 100 7 0 chr4 78461928 78462207 -123866140 + AluSg SINE Alu 1 281 -29 267 31 0 0 chr4 78462210 78462242 -123866105 + (GAA)n Simple_repeat Simple_repeat 2 33 0 35 71 0 0 chr4 78462283 78462353 -123865994 + AT_rich Low_complexity Low_complexity 1 70 0 401 310 116 17 chr4 78462378 78463198 -123865149 + L1M4 LINE L1 4489 5389 -757 302 253 0 0 chr4 78463248 78463331 -123865016 + MLT1I LTR MaLR 310 392 -17 2047 103 38 3 chr4 78463934 78464224 -123864123 + AluY SINE Alu 1 300 -11 2062 125 3 3 chr4 78464589 78464877 -123863470 - AluSg SINE Alu -22 288 1 1516 188 14 4 chr4 78465960 78466237 -123862110 - MLT1A1 LTR MaLR 0 365 86 290 114 0 0 chr4 78466440 78466484 -123861863 + MLT1A1 LTR MaLR 1 44 -321 2325 167 36 0 chr4 78466549 78466962 -123861385 + MSTA LTR MaLR 1 428 0 38 0 0 0 chr4 78467712 78467750 -123860597 + AT_rich Low_complexity Low_complexity 1 38 0 214 24 0 73 chr4 78467923 78467964 -123860383 + (TTTTA)n Simple_repeat Simple_repeat 4 41 0 34 0 0 0 chr4 78470974 78471008 -123857339 + AT_rich Low_complexity Low_complexity 1 34 0 183 80 0 0 chr4 78471297 78471322 -123857025 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 215 267 22 0 chr4 78471322 78471367 -123856980 - L2 LINE L2 -14 3258 3213 934 343 84 16 chr4 78471815 78472396 -123855951 + L2 LINE L2 1751 2371 -943 235 432 0 0 chr4 78472480 78472575 -123855772 - L2 LINE L2 -62 3210 3116 375 351 113 16 chr4 78472740 78473119 -123855228 - L2 LINE L2 -438 2876 2461 24 53 0 0 chr4 78473694 78473732 -123854615 + AT_rich Low_complexity Low_complexity 1 38 0 346 257 81 33 chr4 78473750 78474016 -123854331 - MLT1J2 LTR MaLR -39 407 82 295 306 37 45 chr4 78474923 78475057 -123853290 - MLT1J2 LTR MaLR -36 414 282 1907 140 0 0 chr4 78477293 78477584 -123850763 + AluY SINE Alu 10 300 0 234 349 15 0 chr4 78477764 78477830 -123850517 - L2 LINE L2 -15 3257 3191 537 400 60 0 chr4 78479203 78479488 -123848859 - L2 LINE L2 -4 3268 2967 307 277 155 38 chr4 78479671 78479884 -123848463 + MIR SINE MIR 12 249 -13 235 219 0 0 chr4 78480529 78480570 -123847777 - MIR3 SINE MIR -14 194 154 185 322 165 8 chr4 78480607 78480728 -123847619 - MIR SINE MIR -122 140 1 21 100 0 0 chr4 78480786 78480856 -123847491 + AT_rich Low_complexity Low_complexity 1 70 0 272 277 0 15 chr4 78480935 78481000 -123847347 - L2 LINE L2 0 3272 3209 296 345 87 12 chr4 78482430 78482593 -123845754 - MIR SINE MIR -50 212 39 346 299 201 7 chr4 78483128 78483272 -123845075 + MIR SINE MIR 80 251 -11 986 324 220 5 chr4 78484850 78485455 -123842892 - L2 LINE L2 -638 2676 1942 617 236 39 22 chr4 78485969 78486173 -123842174 - MIR SINE MIR 0 262 9 2330 88 0 3 chr4 78686367 78686662 -123641685 - AluSg SINE Alu -16 294 1 290 170 90 120 chr4 78687049 78687149 -123641198 + MIR SINE MIR 36 132 -76 216 264 48 72 chr4 78687289 78687414 -123640933 - L2 LINE L2 -254 3018 2897 596 112 86 9 chr4 78687533 78687649 -123640698 - L1MB2 LINE L1 -106 6065 5941 341 283 11 33 chr4 78687738 78687830 -123640517 - L2 LINE L2 -14 3258 3169 6117 98 6 0 chr4 78687831 78689048 -123639299 - L1PA11 LINE L1 -1 6173 4933 1338 129 77 20 chr4 78689248 78689496 -123638851 + MLT1B-int LTR MaLR 1469 1730 -5 1130 199 54 22 chr4 78689502 78689779 -123638568 + MLT1B LTR MaLR 1 286 -104 2691 149 9 4 chr4 78689862 78690317 -123638030 + MER41E LTR ERV1 1 457 -55 575 207 8 8 chr4 78690310 78690431 -123637916 + MLT1B LTR MaLR 270 390 0 * 246 313 53 0 chr4 78690431 78690549 -123637798 - MIR SINE MIR -80 128 2 297 0 0 0 chr4 78690966 78690999 -123637348 + (CA)n Simple_repeat Simple_repeat 1 33 0 438 352 113 15 chr4 78691012 78691339 -123637008 + L3 LINE CR1 1192 1550 -27 341 109 0 0 chr4 78691417 78691472 -123636875 + L1PA4 LINE L1 6098 6152 -3 1360 281 63 46 chr4 78692594 78693531 -123634816 - L1ME3A LINE L1 -9 6155 5255 427 229 25 45 chr4 78693965 78694166 -123634181 - L1ME3A LINE L1 -1459 4687 4491 367 290 23 36 chr4 78694346 78694494 -123633853 + MIR SINE MIR 14 151 -66 187 212 0 0 chr4 78694521 78694554 -123633793 + L2 LINE L2 3222 3254 -18 397 245 90 57 chr4 78694967 78695179 -123633168 + L2 LINE L2 3095 3313 0 2765 42 0 0 chr4 78695496 78695828 -123632519 + L1PA7 LINE L1 5819 6150 -4 1374 227 5 49 chr4 78696238 78696424 -123631923 + MLT1A2 LTR MaLR 1 163 -211 180 0 0 0 chr4 78696424 78696444 -123631903 + (TC)n Simple_repeat Simple_repeat 1 20 0 1374 227 5 49 chr4 78696444 78696644 -123631703 + MLT1A2 LTR MaLR 163 370 -4 29 0 0 0 chr4 78696802 78696831 -123631516 + AT_rich Low_complexity Low_complexity 1 29 0 1995 143 20 0 chr4 78696842 78697136 -123631211 + AluSx SINE Alu 1 300 -12 520 260 164 26 chr4 78697259 78697483 -123630864 + MIR SINE MIR 20 261 -1 263 246 33 0 chr4 78697532 78697593 -123630754 + L2 LINE L2 3210 3272 0 1545 195 23 12 chr4 78697657 78698001 -123630346 - MER90 LTR ERV1 -2 612 265 315 321 20 68 chr4 78698043 78698292 -123630055 - LTR16B LTR ERVL -2 462 226 285 277 0 32 chr4 78698770 78698864 -123629483 - MIR SINE MIR -116 146 56 2299 79 0 10 chr4 78699329 78699620 -123628727 - AluSc SINE Alu -19 290 3 295 315 28 37 chr4 78700106 78700214 -123628133 + L2 LINE L2 3122 3228 -44 2126 103 10 10 chr4 78700508 78700808 -123627539 - AluSc SINE Alu -9 300 1 315 0 0 0 chr4 78701372 78701407 -123626940 + (CA)n Simple_repeat Simple_repeat 1 35 0 1229 189 74 62 chr4 78701679 78702097 -123626250 - Zaphod DNA AcHobo -10 4021 3599 392 119 35 78 chr4 78702110 78702204 -123626143 - LTR45 LTR ERV1 0 525 398 17242 102 8 4 chr4 78702205 78704873 -123623474 + L1PA7 LINE L1 1581 4259 -1887 6825 64 8 0 chr4 78704873 78706437 -123621910 + L1PA7 LINE L1 4583 6153 -1 262 233 95 17 chr4 78706545 78706661 -123621686 - LTR45B LTR ERV1 -69 420 296 429 264 27 0 chr4 78707042 78707152 -123621195 - MLT1K LTR MaLR -305 283 171 236 214 0 36 chr4 78707204 78707260 -123621087 + CT-rich Low_complexity Low_complexity 4 57 0 208 259 0 0 chr4 78707921 78707975 -123620372 + A-rich Low_complexity Low_complexity 1 54 0 392 311 35 48 chr4 78707981 78708357 -123619990 + L1MEd LINE L1 2 409 -5710 253 293 53 0 chr4 78708448 78708523 -123619824 + L1MEd LINE L1 475 553 -5566 1083 232 142 9 chr4 78708589 78708921 -123619426 + Cheshire DNA MER1_type 1 376 -2044 699 243 46 7 chr4 78708921 78709267 -123619080 - MSTD LTR MaLR 0 396 1 2614 229 38 45 chr4 78709282 78710152 -123618195 + Cheshire DNA MER1_type 390 1253 -1167 2191 203 103 6 chr4 78710609 78711150 -123617197 + Charlie1a DNA MER1_type 1 594 -861 1718 147 59 39 chr4 78711154 78711460 -123616887 + AluJo SINE Alu 1 312 0 684 98 0 0 chr4 78711463 78711565 -123616782 + (GGAA)n Simple_repeat Simple_repeat 3 104 0 1911 205 29 2 chr4 78711567 78712010 -123616337 + Charlie1a DNA MER1_type 588 1042 -413 322 180 0 0 chr4 78712047 78712108 -123616239 + Charlie1a DNA MER1_type 1394 1454 -1 38 22 0 0 chr4 78712222 78712267 -123616080 + AT_rich Low_complexity Low_complexity 1 45 0 1873 97 0 30 chr4 78712267 78712535 -123615812 - AluY SINE Alu -5 306 47 1620 204 4 0 chr4 78712535 78712813 -123615534 - AluJo SINE Alu -31 281 1 643 269 48 21 chr4 78712864 78713050 -123615297 - MIR SINE MIR 0 262 72 820 176 104 49 chr4 78713167 78713474 -123614873 + MER33 DNA MER1_type 1 324 0 3662 118 6 62 chr4 78713574 78714218 -123614129 - MER4B LTR ERV1 0 610 3 2145 146 0 3 chr4 78714752 78715060 -123613287 - AluSq SINE Alu -6 307 1 24 0 0 0 chr4 78715264 78715288 -123613059 + AT_rich Low_complexity Low_complexity 1 24 0 184 214 0 0 chr4 78715610 78715652 -123612695 + MIR SINE MIR 119 160 -102 2623 170 37 17 chr4 78715653 78716189 -123612158 - MER34C LTR ERV1 -4 581 35 428 238 115 8 chr4 78716459 78716581 -123611766 + MLT1I LTR MaLR 72 206 -203 1236 178 76 4 chr4 78716621 78716897 -123611450 - MER50 LTR ERV1 0 734 439 1666 152 7 3 chr4 78716909 78717198 -123611149 - MER50 LTR ERV1 -444 290 1 376 224 14 9 chr4 78717258 78717373 -123610974 + MLT1I LTR MaLR 317 409 0 230 338 40 0 chr4 78717373 78717447 -123610900 + L2 LINE L2 3196 3272 0 21 0 0 0 chr4 78717447 78717468 -123610879 + AT_rich Low_complexity Low_complexity 1 21 0 686 249 83 31 chr4 78718469 78718698 -123609649 + MIR SINE MIR 21 261 -1 372 238 60 0 chr4 78718719 78718803 -123609544 + MIR SINE MIR 73 161 -101 202 272 239 0 chr4 78719085 78719177 -123609170 + L2 LINE L2 3150 3263 -9 319 268 240 50 chr4 78719208 78719525 -123608822 - L1M2 LINE L1 -5899 950 574 234 91 0 0 chr4 78721250 78721283 -123607064 + (T)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr4 78722091 78722113 -123606234 + AT_rich Low_complexity Low_complexity 1 22 0 1452 199 35 14 chr4 78722113 78722395 -123605952 - AluJb SINE Alu -24 288 1 2560 51 0 6 chr4 78722702 78723013 -123605334 - AluY SINE Alu 0 311 3 622 304 88 4 chr4 78723704 78723931 -123604416 + MIR SINE MIR 17 262 0 620 200 74 17 chr4 78725213 78725388 -123602959 + MER53 DNA DNA 4 188 -1 194 0 39 0 chr4 78726303 78726329 -123602018 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 1588 171 111 18 chr4 78726578 78726912 -123601435 - MLT1A1 LTR MaLR 0 365 1 427 283 5 50 chr4 78728354 78728552 -123599795 + L2 LINE L2 3121 3309 -4 * 470 224 56 16 chr4 78728538 78728663 -123599684 - L2 LINE L2 -5 3308 3179 664 265 12 6 chr4 78728693 78728859 -123599488 + L2 LINE L2 2312 2478 -836 9102 141 12 13 chr4 78729005 78729360 -123598987 - L1P LINE L1 -1478 4668 4314 2254 112 3 0 chr4 78729360 78729664 -123598683 + AluSx SINE Alu 6 310 -2 9102 141 12 13 chr4 78729664 78730956 -123597391 - L1P LINE L1 -1832 4314 3022 699 152 26 46 chr4 78731024 78731175 -123597172 - L1MD3 LINE L1 0 7995 7848 540 180 60 73 chr4 78731214 78731364 -123596983 + MIR SINE MIR 88 235 -27 271 176 0 0 chr4 78732445 78732496 -123595851 - L2 LINE L2 0 3313 3263 249 312 128 8 chr4 78733071 78733196 -123595151 + MIR SINE MIR 2 141 -121 484 122 271 0 chr4 78734495 78734602 -123593745 - L2 LINE L2 0 3313 3178 346 306 50 33 chr4 78734817 78734997 -123593350 - MIR SINE MIR 0 262 80 22 21 0 62 chr4 78735154 78735202 -123593145 + AT_rich Low_complexity Low_complexity 1 45 0 578 275 109 18 chr4 78735674 78735903 -123592444 - MIR SINE MIR -1 261 12 1606 151 8 0 chr4 78736522 78736774 -123591573 + AluSx SINE Alu 59 312 0 21 0 0 0 chr4 78736942 78736963 -123591384 + AT_rich Low_complexity Low_complexity 1 21 0 418 299 65 7 chr4 78737200 78737354 -123590993 - MIR3 SINE MIR -15 193 31 354 23 0 0 chr4 78737374 78737417 -123590930 + (CA)n Simple_repeat Simple_repeat 1 43 0 309 320 83 87 chr4 78739278 78739797 -123588550 + L1M2 LINE L1 487 1003 -5846 956 182 0 45 chr4 78740420 78740651 -123587696 + AluJb SINE Alu 98 319 0 223 91 0 0 chr4 78740618 78740687 -123587660 + (CAA)n Simple_repeat Simple_repeat 1 69 0 * 243 254 0 0 chr4 78741854 78741909 -123586438 + CT-rich Low_complexity Low_complexity 4 58 0 221 136 0 23 chr4 78741910 78741954 -123586393 + (TTC)n Simple_repeat Simple_repeat 3 45 0 2089 103 16 22 chr4 78742878 78743189 -123585158 - AluSq SINE Alu -4 309 1 277 246 89 6 chr4 78743565 78743669 -123584678 + MIR3 SINE MIR 65 175 -33 225 119 0 0 chr4 78743734 78743776 -123584571 + (TAG)n Simple_repeat Simple_repeat 1 42 0 588 189 57 9 chr4 78743776 78743882 -123584465 - FLAM_C SINE Alu -28 115 5 186 240 40 53 chr4 78744026 78744101 -123584246 + L2 LINE L2 1013 1086 -2228 264 30 0 0 chr4 78744297 78744330 -123584017 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2048 126 0 0 chr4 78744337 78744614 -123583733 - AluSx SINE Alu -35 277 1 212 342 99 0 chr4 78745547 78745658 -123582689 - MIR SINE MIR -98 164 43 1293 191 48 82 chr4 78745661 78746037 -123582310 - MLT1A2 LTR MaLR -11 363 1 2127 225 26 5 chr4 78746090 78746655 -123581692 - L1MC3 LINE L1 -8 7777 7201 372 222 33 0 chr4 78746670 78746760 -123581587 - MLT1F1 LTR MaLR -442 125 33 369 158 87 0 chr4 78746760 78746887 -123581460 - L1MC3 LINE L1 -690 7095 6958 5766 126 22 1 chr4 78747036 78748099 -123580248 + L1PA15 LINE L1 5065 6158 -7 725 256 178 22 chr4 78748133 78748492 -123579855 - MLT1J1 LTR MaLR -31 415 1 267 200 0 0 chr4 78748780 78748835 -123579512 + HsTC2 DNA Tc2 14 68 -1830 597 268 120 29 chr4 78748889 78749273 -123579074 + HsTC2 DNA Tc2 1306 1900 0 239 371 9 9 chr4 78750102 78750207 -123578140 - MIR SINE MIR -66 142 38 617 279 67 14 chr4 78751454 78751662 -123576685 + MIR SINE MIR 43 261 -1 181 347 0 0 chr4 78752013 78752062 -123576285 - L2 LINE L2 -10 3262 3214 779 229 47 16 chr4 78752262 78752454 -123575893 - MIR SINE MIR -1 261 64 651 277 81 94 chr4 78753538 78753910 -123574437 + L3 LINE CR1 1200 1566 -11 806 177 0 0 chr4 78754030 78754171 -123574176 + L1PB4 LINE L1 6009 6149 -7 24 0 0 0 chr4 78754185 78754209 -123574138 + AT_rich Low_complexity Low_complexity 1 24 0 8498 38 5 1 chr4 78754420 78755520 -123572827 + L1P LINE L1 4300 5403 -743 22 35 0 0 chr4 78756409 78756438 -123571909 + AT_rich Low_complexity Low_complexity 1 29 0 237 340 117 19 chr4 78756759 78756862 -123571485 + L2 LINE L2 2552 2664 -650 * 603 250 7 14 chr4 78756853 78756997 -123571350 + MIR SINE MIR 110 252 -10 956 301 87 43 chr4 78757062 78757645 -123570702 + L2 LINE L2 2533 3089 -224 450 0 0 0 chr4 78757645 78757695 -123570652 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 4062 13 0 0 chr4 78757695 78758151 -123570196 - L1PA2 LINE L1 -13 6142 5687 956 301 87 43 chr4 78758151 78758301 -123570046 + L2 LINE L2 3088 3300 -13 201 321 120 102 chr4 78758413 78758862 -123569485 + L2 LINE L2 2808 3264 -8 235 326 112 10 chr4 78760051 78760149 -123568198 - L2 LINE L2 -28 3244 3137 400 83 17 0 chr4 78760718 78760778 -123567569 - L1PA16 LINE L1 -11 6155 6095 1066 238 40 55 chr4 78760861 78761283 -123567064 + MLT2B1 LTR ERVL 1 464 -56 333 0 0 0 chr4 78761301 78761338 -123567009 + (CA)n Simple_repeat Simple_repeat 2 38 0 580 255 6 12 chr4 78761341 78761502 -123566845 - Tigger1 DNA MER2_type -1 2417 2258 195 42 0 0 chr4 78761516 78761540 -123566807 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 5043 66 1 0 chr4 78761540 78762211 -123566136 - L1PA8 LINE L1 -24 6148 5477 12444 138 40 11 chr4 78762211 78762987 -123565360 - Tigger1 DNA MER2_type -165 2253 1501 2112 107 13 13 chr4 78762987 78763311 -123565036 - AluSg SINE Alu 0 310 6 12444 138 40 11 chr4 78763311 78764723 -123563624 - Tigger1 DNA MER2_type -917 1501 2 669 140 9 0 chr4 78764754 78764861 -123563486 - Tigger1 DNA MER2_type -993 1425 1318 283 121 0 52 chr4 78764862 78764920 -123563427 + MLT2B1 LTR ERVL 466 520 0 277 304 81 57 chr4 78765722 78765836 -123562511 - L2 LINE L2 0 3313 3203 3452 89 11 0 chr4 78765836 78766284 -123562063 + MLT2A2 LTR ERVL 1 453 0 277 304 81 57 chr4 78766284 78766452 -123561895 - L2 LINE L2 -110 3203 3024 1434 287 63 11 chr4 78767063 78767540 -123560807 - L2 LINE L2 -339 2975 2474 440 246 46 86 chr4 78767555 78767730 -123560617 + MER69A DNA AcHobo 2 169 -8 1617 166 65 6 chr4 78768819 78769156 -123559191 - MLT1A1 LTR MaLR -8 357 1 586 294 22 27 chr4 78769849 78770033 -123558314 - MER5A DNA MER1_type -1 188 6 524 326 55 17 chr4 78771195 78771431 -123556916 - L2 LINE L2 -683 2631 2387 662 196 68 78 chr4 78771694 78771975 -123556372 + LTR37A LTR ERV1 91 368 -58 1335 173 21 21 chr4 78771982 78772219 -123556128 - AluJb SINE Alu -23 289 53 2401 93 0 0 chr4 78773126 78773427 -123554920 + AluSx SINE Alu 1 301 -11 28484 112 18 64 chr4 78773845 78780298 -123548049 + L1PA7 LINE L1 4 6151 -3 29 70 0 0 chr4 78780442 78780499 -123547848 + AT_rich Low_complexity Low_complexity 1 57 0 238 246 16 0 chr4 78781123 78781184 -123547163 - LTR67 LTR ERVL -2 555 494 28 0 0 0 chr4 78782327 78782355 -123545992 + AT_rich Low_complexity Low_complexity 1 28 0 367 296 64 47 chr4 78782991 78783163 -123545184 + MLT1J2 LTR MaLR 276 450 0 387 320 77 105 chr4 78783232 78783585 -123544762 - L2 LINE L2 0 3272 2930 263 286 16 0 chr4 78784003 78784066 -123544281 + polypyrimidine Low_complexity Low_complexity 3 66 0 189 302 38 0 chr4 78784280 78784333 -123544014 + MIR3 SINE MIR 102 156 -52 416 268 114 15 chr4 78784808 78784908 -123543439 - MIR SINE MIR -65 143 36 2222 115 126 5 chr4 78784908 78785290 -123543057 + MSTA LTR MaLR 1 428 0 416 268 114 15 chr4 78785290 78785327 -123543020 - MIR SINE MIR -172 36 4 267 351 110 0 chr4 78785849 78786003 -123542344 + MIR SINE MIR 92 262 0 216 268 0 0 chr4 78786011 78786067 -123542280 + MIR SINE MIR 183 238 -24 183 254 73 18 chr4 78786088 78786143 -123542204 - L3 LINE CR1 -5 1572 1515 22 35 0 0 chr4 78786496 78786525 -123541822 + AT_rich Low_complexity Low_complexity 1 29 0 389 225 0 0 chr4 78786992 78787081 -123541266 + MER89 LTR ERV1 1 89 -470 * 1421 243 11 11 chr4 78787054 78787412 -123540935 + MER89 LTR ERV1 197 554 -5 1124 287 76 68 chr4 78787444 78788015 -123540332 + MER89-int LTR ERV1 35 613 -6188 2374 207 21 33 chr4 78788015 78788536 -123539811 + MLT2B2 LTR ERVL 1 515 0 1124 287 76 68 chr4 78788536 78788650 -123539697 + MER89-int LTR ERV1 613 725 -6076 13138 241 45 41 chr4 78788867 78789140 -123539207 + MER89-int LTR ERV1 2850 3120 -3681 1501 216 61 54 chr4 78789140 78789602 -123538745 - MLT1C LTR MaLR -2 465 1 13138 241 45 41 chr4 78789602 78789633 -123538714 + MER89-int LTR ERV1 3120 3149 -3652 1745 183 0 7 chr4 78789633 78789941 -123538406 + AluJo SINE Alu 2 307 0 13138 241 45 41 chr4 78789941 78793570 -123534777 + MER89-int LTR ERV1 3149 6801 0 1322 217 19 73 chr4 78793570 78794058 -123534289 + MER89 LTR ERV1 1 559 0 462 305 30 8 chr4 78795718 78795849 -123532498 - L2 LINE L2 0 3272 3139 216 296 157 17 chr4 78796645 78796760 -123531587 - L2 LINE L2 -177 3095 2965 1545 230 97 7 chr4 78797131 78797575 -123530772 + MER110 LTR ERV1 1 484 -7 207 0 0 0 chr4 78798224 78798247 -123530100 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2298 69 0 3 chr4 78798640 78798966 -123529381 + AluY SINE Alu 1 311 0 4016 175 42 26 chr4 78801559 78802344 -123526003 - L1PB4 LINE L1 -14 6142 5371 1678 169 6 65 chr4 78802344 78802669 -123525678 - AluJo SINE Alu -6 306 1 4016 175 42 26 chr4 78802669 78803511 -123524836 - L1PB4 LINE L1 -785 5371 4472 349 339 31 15 chr4 78803901 78804031 -123524316 - MIR3 SINE MIR -64 144 13 2136 150 87 25 chr4 78804789 78805228 -123523119 + MER31B LTR ERV1 1 466 0 22 0 0 0 chr4 78805813 78805835 -123522512 + AT_rich Low_complexity Low_complexity 1 22 0 217 288 34 0 chr4 78806658 78806717 -123521630 + L3 LINE CR1 1505 1565 -12 184 337 183 43 chr4 78806804 78807362 -123520985 + L2 LINE L2 376 1011 -2303 527 186 29 0 chr4 78807530 78807632 -123520715 - MLT1C LTR MaLR -8 459 355 1616 193 51 3 chr4 78807673 78808025 -123520322 - MLT1C LTR MaLR -98 369 1 279 292 83 0 chr4 78808034 78808178 -123520169 - MLT1L LTR MaLR -144 471 316 547 356 131 35 chr4 78808684 78809460 -123518887 + L2 LINE L2 1557 2407 -907 697 101 43 7 chr4 78809461 78809599 -123518748 + CT-rich Low_complexity Low_complexity 3 145 0 226 321 73 37 chr4 78809697 78809806 -123518541 + L2 LINE L2 2563 2675 -639 204 125 0 0 chr4 78810039 78810071 -123518276 + (TA)n Simple_repeat Simple_repeat 2 33 0 278 410 26 0 chr4 78810405 78810522 -123517825 + MIR SINE MIR 7 126 -136 1059 159 0 80 chr4 78811467 78811706 -123516641 + MLT1B LTR MaLR 1 220 -170 275 305 22 86 chr4 78811741 78812010 -123516337 - L2 LINE L2 -790 2524 2273 204 122 0 0 chr4 78812071 78812112 -123516235 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 1984 145 28 0 chr4 78812458 78812747 -123515600 + AluSq SINE Alu 1 297 -16 4931 123 24 2 chr4 78812958 78813747 -123514600 + L1PA16 LINE L1 5359 6164 -2 657 251 141 133 chr4 78813805 78814407 -123513940 - L3 LINE CR1 -4 1573 967 21 36 0 0 chr4 78815394 78815422 -123512925 + AT_rich Low_complexity Low_complexity 1 28 0 605 219 154 11 chr4 78815715 78815975 -123512372 + L1ME4a LINE L1 5588 5884 -237 937 178 130 0 chr4 78818064 78818249 -123510098 + MER3 DNA MER1_type 1 209 0 388 290 49 38 chr4 78818259 78818442 -123509905 + L2 LINE L2 3104 3288 -25 257 264 264 8 chr4 78818467 78818588 -123509759 - MIR SINE MIR -104 158 7 1006 146 25 19 chr4 78818859 78819017 -123509330 + FRAM SINE Alu 3 161 -15 27 81 0 0 chr4 78819703 78819765 -123508582 + AT_rich Low_complexity Low_complexity 1 62 0 321 325 17 8 chr4 78820314 78820431 -123507916 + MIR SINE MIR 145 262 0 400 281 123 20 chr4 78820527 78820673 -123507674 + MIR SINE MIR 90 250 -12 28 0 0 0 chr4 78821575 78821603 -123506744 + AT_rich Low_complexity Low_complexity 1 28 0 326 149 0 92 chr4 78821608 78821695 -123506652 + MLT2F LTR ERVL 1 79 -584 207 0 0 0 chr4 78823112 78823135 -123505212 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1957 116 0 56 chr4 78823138 78823441 -123504906 - AluSg SINE Alu -24 286 1 367 252 48 19 chr4 78823485 78823588 -123504759 - MER5B DNA MER1_type -71 107 2 203 317 12 98 chr4 78823619 78823701 -123504646 + L2 LINE L2 3114 3188 -84 820 235 175 3 chr4 78823744 78823963 -123504384 + MER46C DNA MER2_type 1 282 -56 324 0 0 0 chr4 78823963 78823999 -123504348 + (CA)n Simple_repeat Simple_repeat 1 36 0 820 235 175 3 chr4 78823999 78824064 -123504283 + MER46C DNA MER2_type 282 334 -4 323 279 64 29 chr4 78824134 78824306 -123504041 - MER5B DNA MER1_type 0 178 1 27358 128 18 53 chr4 78824524 78830926 -123497421 - L1PA8 LINE L1 0 6172 12 246 284 27 0 chr4 78831610 78831684 -123496663 + MIR SINE MIR 187 262 0 349 382 15 8 chr4 78831989 78832120 -123496227 + MIR3 SINE MIR 30 161 -47 2209 129 0 0 chr4 78832129 78832438 -123495909 + AluSx SINE Alu 1 309 -3 301 260 10 60 chr4 78832562 78832662 -123495685 + MER58 DNA MER1_type 1 95 -246 290 247 11 22 chr4 78832678 78832767 -123495580 + MER58 DNA MER1_type 2318 2405 -15 2169 149 22 17 chr4 78833263 78833625 -123494722 - THE1B LTR MaLR 0 364 1 1188 223 58 42 chr4 78833887 78834269 -123494078 + MLT1C LTR MaLR 52 439 -28 244 279 0 0 chr4 78834613 78834681 -123493666 + L2 LINE L2 3205 3272 0 192 296 0 19 chr4 78834918 78834972 -123493375 + MIR SINE MIR 31 83 -179 604 325 113 39 chr4 78835419 78835880 -123492467 + L2 LINE L2 2432 2926 -388 255 145 145 48 chr4 78835933 78836016 -123492331 - MLT1I LTR MaLR -46 363 273 593 334 78 8 chr4 78836294 78836653 -123491694 + L2 LINE L2 2925 3308 -5 327 178 68 0 chr4 78837445 78837518 -123490829 - MER53 DNA DNA -111 78 1 21 0 0 0 chr4 78837563 78837584 -123490763 + AT_rich Low_complexity Low_complexity 1 21 0 289 208 83 0 chr4 78838103 78838175 -123490172 - MIR SINE MIR -65 197 120 8161 130 8 10 chr4 78838506 78839992 -123488355 - Tigger1 DNA MER2_type 0 2418 960 2385 174 4 14 chr4 78839992 78840263 -123488084 + L1P LINE L1 4769 5035 -1111 1996 71 0 0 chr4 78840263 78840538 -123487809 + AluY SINE Alu 42 316 0 2385 174 4 14 chr4 78840538 78840754 -123487593 + L1P LINE L1 5035 5252 -894 5699 124 10 0 chr4 78840759 78841863 -123486484 + L1PA13 LINE L1 5051 6163 0 4947 174 26 6 chr4 78841875 78842832 -123485515 - Tigger1 DNA MER2_type -1442 976 1 1205 262 57 46 chr4 78843542 78844177 -123484170 - L2 LINE L2 0 3313 2657 282 315 71 8 chr4 78844200 78844327 -123484020 + HAL1 LINE L1 1 135 -2372 1558 157 27 56 chr4 78844408 78844745 -123483602 - MER7A DNA MER2_type -20 326 2 25 0 0 0 chr4 78844845 78844870 -123483477 + AT_rich Low_complexity Low_complexity 1 25 0 244 333 21 21 chr4 78844948 78845092 -123483255 + HAL1 LINE L1 256 399 -2108 387 288 44 52 chr4 78845163 78845434 -123482913 + HAL1 LINE L1 530 798 -1709 1747 160 10 24 chr4 78845739 78846076 -123482271 + AluJb SINE Alu 1 333 0 3327 125 21 35 chr4 78846086 78846621 -123481726 - MER1A DNA MER1_type 0 527 1 249 352 101 60 chr4 78846664 78847101 -123481246 - L2 LINE L2 -9 3263 2809 293 206 7 121 chr4 78847329 78847433 -123480914 + MIR SINE MIR 28 125 -83 3419 76 16 2 chr4 78848062 78848509 -123479838 + MLT2A2 LTR ERVL 1 453 0 201 189 113 0 chr4 78848574 78848627 -123479720 + MER91C DNA MER1_type 63 121 -19 756 278 128 31 chr4 78849836 78850446 -123477901 + L2 LINE L2 2637 3311 -2 247 256 54 65 chr4 78852025 78852193 -123476154 + L1ME LINE L1 5704 5824 -297 189 228 53 53 chr4 78853024 78853081 -123475266 - MIR3 SINE MIR -22 186 130 488 306 44 28 chr4 78853122 78853343 -123475004 - MIR SINE MIR -26 236 7 920 215 7 83 chr4 78853586 78853874 -123474473 + L1MC5 LINE L1 6696 6961 -1000 2439 218 35 70 chr4 78853893 78854875 -123473472 + L1MC5 LINE L1 6955 7901 -60 216 264 48 72 chr4 78855065 78855190 -123473157 + L2 LINE L2 2897 3018 -254 277 180 90 120 chr4 78855330 78855430 -123472917 - MIR SINE MIR -76 132 36 2335 100 0 3 chr4 78856187 78856498 -123471849 + AluSg SINE Alu 1 310 0 2328 76 21 0 chr4 78856770 78857058 -123471289 - AluY SINE Alu -17 294 1 1279 227 87 32 chr4 78857627 78858063 -123470284 - MLT1C LTR MaLR -7 460 1 203 184 0 0 chr4 78858187 78858225 -123470122 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 234 254 34 0 chr4 78858314 78858373 -123469974 - MER20B DNA MER1_type -656 127 67 6830 69 27 0 chr4 78858887 78860116 -123468231 - L1PA7 LINE L1 -2 6152 4910 232 326 53 0 chr4 78863135 78863230 -123465117 - MIR SINE MIR -62 200 101 21 0 0 0 chr4 78863507 78863528 -123464819 + AT_rich Low_complexity Low_complexity 1 21 0 342 331 39 8 chr4 78863579 78863709 -123464638 - MIR SINE MIR -55 153 20 520 330 71 13 chr4 78864540 78864764 -123463583 - MIR SINE MIR -6 256 20 227 289 96 12 chr4 78864781 78864864 -123463483 + MIR SINE MIR 108 197 -65 341 352 93 65 chr4 78865679 78866065 -123462282 - L2 LINE L2 -5 3267 2871 561 299 88 0 chr4 78866118 78866312 -123462035 + MIR SINE MIR 49 259 -3 677 196 98 57 chr4 78866431 78866625 -123461722 + MER3 DNA MER1_type 2 203 -6 399 231 88 97 chr4 78866636 78866827 -123461520 - MIR3 SINE MIR 0 208 19 652 153 84 8 chr4 78867290 78867421 -123460926 + L1M4c LINE L1 19 159 -6225 805 271 145 27 chr4 78868197 78868570 -123459777 + LTR33 LTR ERVL 1 417 -104 228 86 0 0 chr4 78868828 78868863 -123459484 + (TG)n Simple_repeat Simple_repeat 2 36 0 1577 237 67 2 chr4 78868885 78869319 -123459028 - MLT2B1 LTR ERVL -56 464 3 1105 223 24 40 chr4 78869659 78869987 -123458360 + MLT1A2 LTR MaLR 1 323 -51 261 212 186 18 chr4 78870126 78870239 -123458108 - L1ME LINE L1 -236 5885 5754 7830 117 35 9 chr4 78870297 78871901 -123456446 + L1PB2 LINE L1 4323 6015 -136 2883 86 2 12 chr4 78871634 78872051 -123456296 + L1PA10 LINE L1 5752 6164 -4 * 237 288 172 43 chr4 78874081 78874244 -123454103 - MIR SINE MIR -74 188 5 356 270 29 15 chr4 78875531 78875668 -123452679 - MER104 DNA Tc2 -3 177 39 2499 119 11 3 chr4 78875695 78876056 -123452291 + THE1B LTR MaLR 1 364 0 295 313 90 15 chr4 78876161 78876295 -123452052 - MIR SINE MIR -62 146 2 461 240 56 8 chr4 78876825 78876950 -123451397 + L2 LINE L2 3166 3296 -17 183 42 0 0 chr4 78876951 78876975 -123451372 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 4883 128 9 4 chr4 78877287 78878076 -123450271 - L1PA15 LINE L1 0 6165 5373 745 236 77 30 chr4 78879039 78879272 -123449075 + MIR SINE MIR 19 262 0 2866 19 0 0 chr4 78879828 78880144 -123448203 + AluYb8 SINE Alu 1 316 -2 277 351 92 35 chr4 78880450 78881048 -123447299 + L2 LINE L2 2472 3098 -174 301 254 40 32 chr4 78881224 78881350 -123446997 + MLT1B LTR MaLR 262 388 -2 22796 176 27 28 chr4 78882102 78887893 -123440454 + L1P4 LINE L1 8 5912 -571 2179 112 0 13 chr4 78887893 78888197 -123440150 + AluSg SINE Alu 1 300 -10 22796 176 27 28 chr4 78888197 78888331 -123440016 + L1P4 LINE L1 5912 6045 -438 2175 151 37 80 chr4 78888938 78889423 -123438924 + MLT2C2 LTR ERVL 1 464 0 24 32 0 0 chr4 78890274 78890305 -123438042 + AT_rich Low_complexity Low_complexity 1 31 0 501 326 138 23 chr4 78890319 78890847 -123437500 - L2 LINE L2 -9 3304 2719 14581 140 12 60 chr4 78890848 78893193 -123435154 + Tigger1 DNA MER2_type 1 2458 40 207 0 0 0 chr4 78893193 78893216 -123435131 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1948 93 3 89 chr4 78893218 78893542 -123434805 - AluY SINE Alu -15 296 1 14581 140 12 60 chr4 78893542 78893734 -123434613 + Tigger1 DNA MER2_type 2218 2418 0 8861 138 15 7 chr4 78893768 78896312 -123432035 - L1MA1 LINE L1 0 6302 3734 2061 108 4 0 chr4 78896312 78896591 -123431756 - L1PA7 LINE L1 -4 6150 5871 461 335 122 5 chr4 78897156 78897377 -123430970 - MIR SINE MIR -4 258 12 244 330 43 17 chr4 78897378 78897493 -123430854 + L2 LINE L2 2974 3091 -181 2310 109 89 12 chr4 78897924 78898262 -123430085 - THE1B LTR MaLR 0 364 1 913 234 96 4 chr4 78899419 78899658 -123428689 - MIR SINE MIR 0 262 2 190 271 14 43 chr4 78900678 78900748 -123427599 + MIR SINE MIR 123 190 -72 189 276 66 66 chr4 78901691 78901767 -123426580 - MIR SINE MIR -181 81 6 1990 132 13 13 chr4 78902599 78902903 -123425444 + AluSq SINE Alu 1 304 -9 5237 66 0 0 chr4 78903003 78903624 -123424723 + L1PA6 LINE L1 5523 6143 -11 14409 165 185 22 chr4 78903656 78905499 -123422848 + L1M1 LINE L1 174 1716 -5849 2297 84 0 13 chr4 78905499 78905798 -123422549 + AluY SINE Alu 1 295 -16 14409 165 185 22 chr4 78905798 78907332 -123421015 + L1M1 LINE L1 1716 4111 -3454 4013 131 38 21 chr4 78907338 78907497 -123420850 + L1MA5 LINE L1 5624 5779 -521 2302 104 0 13 chr4 78907497 78907806 -123420541 + AluY SINE Alu 1 305 -6 4013 131 38 21 chr4 78907806 78908312 -123420035 + L1MA5 LINE L1 5779 6300 0 1639 99 17 0 chr4 78908316 78908549 -123419798 + L1MA5 LINE L1 6037 6273 -27 21 0 0 0 chr4 78908549 78908570 -123419777 + AT_rich Low_complexity Low_complexity 1 21 0 2079 135 167 14 chr4 78908711 78909082 -123419265 - MSTA LTR MaLR 0 428 1 189 0 0 0 chr4 78909415 78909436 -123418911 + (TCTA)n Simple_repeat Simple_repeat 2 22 0 664 194 9 23 chr4 78909569 78910120 -123418227 + GA-rich Low_complexity Low_complexity 1 543 0 397 164 45 22 chr4 78910143 78910277 -123418070 + GA-rich Low_complexity Low_complexity 4 140 0 422 269 145 4 chr4 78910284 78910541 -123417806 + LTR16C LTR ERVL 180 491 0 303 71 0 0 chr4 78910886 78910928 -123417419 + (TC)n Simple_repeat Simple_repeat 2 43 0 23 54 0 0 chr4 78911169 78911206 -123417141 + AT_rich Low_complexity Low_complexity 1 37 0 9670 158 24 27 chr4 78911401 78911706 -123416641 + L1M4c LINE L1 639 943 -5439 1945 61 38 27 chr4 78911706 78911967 -123416380 + AluY SINE Alu 32 295 -16 9670 158 24 27 chr4 78911967 78913590 -123414757 + L1M4c LINE L1 943 2567 -3815 1519 153 12 4 chr4 78913596 78913851 -123414496 + L1MB3 LINE L1 5882 6138 -45 1640 165 51 24 chr4 78913853 78914186 -123414161 + THE1C LTR MaLR 34 375 0 2536 197 14 8 chr4 78914251 78914769 -123413578 + L1MB4 LINE L1 5642 6162 -18 474 283 154 50 chr4 78915290 78915502 -123412845 + L2 LINE L2 2864 3053 -260 234 0 0 0 chr4 78915502 78915528 -123412819 + (CA)n Simple_repeat Simple_repeat 1 26 0 474 283 154 50 chr4 78915528 78915718 -123412629 + L2 LINE L2 3053 3308 -5 1948 205 90 5 chr4 78916614 78917049 -123411298 + L1MD3 LINE L1 7522 7993 -2 2169 206 35 15 chr4 78917172 78917629 -123410718 - MER31B LTR ERV1 0 466 1 22 0 0 0 chr4 78919018 78919040 -123409307 + AT_rich Low_complexity Low_complexity 1 22 0 217 73 24 24 chr4 78919631 78919672 -123408675 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 694 273 11 16 chr4 78921415 78921598 -123406749 + MIR SINE MIR 37 218 -44 5201 50 0 0 chr4 78922666 78923261 -123405086 - L1PA5 LINE L1 -4 6150 5556 3118 45 0 2 chr4 78923261 78923808 -123404539 + L1PA5 LINE L1 5009 5554 -600 211 333 35 0 chr4 78924029 78924116 -123404231 + MIR3 SINE MIR 102 191 -17 1694 188 0 69 chr4 78924208 78924569 -123403778 + MLT1A2 LTR MaLR 39 374 0 225 0 0 0 chr4 78925284 78925309 -123403038 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 540 247 89 13 chr4 78926261 78926419 -123401928 - L2 LINE L2 -1 3312 3143 3467 141 33 22 chr4 78926456 78927058 -123401289 + L1MB3 LINE L1 5573 6181 -2 22 0 0 0 chr4 78927058 78927080 -123401267 + AT_rich Low_complexity Low_complexity 1 22 0 574 318 72 22 chr4 78927140 78927363 -123400984 - L2 LINE L2 -467 2847 2614 2161 148 75 5 chr4 78927368 78927752 -123400595 - MSTB LTR MaLR -15 411 1 699 292 9 13 chr4 78927752 78927985 -123400362 - L2 LINE L2 -696 2618 2387 213 277 31 0 chr4 78928060 78928125 -123400222 + L2 LINE L2 3247 3313 0 906 188 117 25 chr4 78929934 78930173 -123398174 + MIR SINE MIR 2 262 0 228 394 0 0 chr4 78930316 78930420 -123397927 - MIR SINE MIR -74 188 85 460 269 205 39 chr4 78930902 78931288 -123397059 - LTR33 LTR ERVL -66 455 6 428 314 41 24 chr4 78932191 78932360 -123395987 - MIR3 SINE MIR -32 176 5 1388 273 151 51 chr4 78932844 78932935 -123395412 + L2 LINE L2 1871 1952 -1361 1239 126 16 0 chr4 78932935 78933117 -123395230 - L1PA16 LINE L1 -9 6157 5973 1388 273 151 51 chr4 78933117 78934334 -123394013 + L2 LINE L2 1952 3313 0 312 342 8 0 chr4 78934355 78934472 -123393875 + MIR SINE MIR 91 208 -54 450 218 64 9 chr4 78934605 78934715 -123393632 - L2 LINE L2 -9 3304 3189 333 336 60 28 chr4 78935205 78935422 -123392925 - MIR SINE MIR -30 232 9 319 179 15 60 chr4 78936346 78936413 -123391934 + AluJo/FLAM SINE Alu 59 122 -180 371 194 28 28 chr4 78936414 78936486 -123391861 - AluJo SINE Alu -113 189 118 775 193 97 40 chr4 78937169 78937345 -123391002 + MER58C DNA MER1_type 27 212 -3 491 248 89 106 chr4 78937436 78937851 -123390496 - LTR40c LTR ERVL -57 408 1 412 221 8 90 chr4 78937861 78937983 -123390364 - MIR SINE MIR -72 190 79 278 273 58 34 chr4 78937984 78938073 -123390274 - MIR SINE MIR -89 119 28 2342 113 0 0 chr4 78938169 78938479 -123389868 - AluSg SINE Alu 0 310 1 199 265 231 60 chr4 78939296 78939413 -123388934 + MIR SINE MIR 2 138 -124 27 29 0 0 chr4 78939972 78940006 -123388341 + AT_rich Low_complexity Low_complexity 1 34 0 255 263 53 0 chr4 78941053 78941110 -123387237 - L2 LINE L2 0 3313 3254 4424 186 30 11 chr4 78941458 78942304 -123386043 - MER21B LTR ERV1 -1 862 1 224 310 92 70 chr4 78942490 78942719 -123385628 - L2 LINE L2 -829 2485 2252 198 286 0 29 chr4 78943240 78943310 -123385037 - L2 LINE L2 -1070 2244 2177 1816 248 88 23 chr4 78943608 78944293 -123384054 + L1MEc LINE L1 34 762 -5634 1729 210 24 0 chr4 78944301 78944639 -123383708 - MER21B LTR ERV1 -241 622 277 1233 266 75 21 chr4 78944672 78945325 -123383022 + L1MEc LINE L1 1105 1792 -4604 23 0 0 0 chr4 78945330 78945353 -123382994 + AT_rich Low_complexity Low_complexity 1 23 0 1779 258 63 31 chr4 78945394 78945968 -123382379 + MLT1E LTR MaLR 2 593 0 338 225 28 35 chr4 78945979 78946121 -123382226 + L1MEc LINE L1 1789 1929 -4467 571 188 29 7 chr4 78946207 78946345 -123382002 + L1MA10 LINE L1 6180 6320 -14 1823 154 59 0 chr4 78946942 78947253 -123381094 + AluSx SINE Alu 1 327 0 200 387 43 16 chr4 78947591 78947777 -123380570 - L2 LINE L2 -556 2758 2568 662 208 157 46 chr4 78947797 78948013 -123380334 - MIR SINE MIR -2 260 21 536 318 113 51 chr4 78948093 78948784 -123379563 + L2 LINE L2 2529 3272 0 244 239 0 70 chr4 78949877 78949948 -123378399 + MIR SINE MIR 28 93 -169 219 191 0 0 chr4 78951867 78951909 -123376438 + L2 LINE L2 3264 3305 -8 199 236 83 14 chr4 78952507 78952579 -123375768 - MIR SINE MIR -1 261 185 275 263 45 68 chr4 78952653 78952786 -123375561 - MLT1J LTR MaLR -94 417 288 450 230 95 27 chr4 78953025 78953173 -123375174 - MIR SINE MIR -35 227 70 658 265 85 18 chr4 78953206 78953429 -123374918 + MIR SINE MIR 4 241 -21 1278 251 52 32 chr4 78953459 78953901 -123374446 + L1ME3 LINE L1 5703 6153 -9 21 0 0 0 chr4 78954728 78954749 -123373598 + AT_rich Low_complexity Low_complexity 1 21 0 384 239 22 0 chr4 78955198 78955290 -123373057 + Zaphod DNA AcHobo 3938 4031 0 266 163 0 0 chr4 78956500 78956543 -123371804 - L2 LINE L2 -8 3305 3263 7151 70 1 1 chr4 78957196 78958638 -123369709 - L1P3 LINE L1 -366 5788 4347 914 133 24 0 chr4 78958643 78958809 -123369538 - L1 LINE L1 -2407 5158 4989 2791 159 22 3 chr4 78958809 78959399 -123368948 - L1 LINE L1 -2475 5090 4490 18654 155 49 6 chr4 78959399 78962879 -123365468 - L1 LINE L1 -3929 3636 9 263 312 163 28 chr4 78962885 78963100 -123365247 - L2 LINE L2 -620 2694 2451 30 0 0 0 chr4 78963435 78963465 -123364882 + AT_rich Low_complexity Low_complexity 1 30 0 875 313 84 39 chr4 78963756 78964197 -123364150 - L2 LINE L2 -849 2465 2005 22 35 0 0 chr4 78965041 78965070 -123363277 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr4 78965184 78965204 -123363143 + (A)n Simple_repeat Simple_repeat 1 20 0 331 319 89 25 chr4 78965234 78965391 -123362956 + MIR SINE MIR 48 214 -48 241 340 43 21 chr4 78965911 78966005 -123362342 - MIR SINE MIR -110 152 57 521 283 72 63 chr4 78966064 78966382 -123361965 + MLT1H LTR MaLR 26 346 -203 1058 165 0 12 chr4 78966693 78966857 -123361490 - FRAM SINE Alu -18 158 1 282 343 80 22 chr4 78967764 78967901 -123360446 + L2 LINE L2 3169 3313 0 204 353 168 0 chr4 78968875 78968994 -123359353 + MIR3 SINE MIR 21 159 -49 23 86 0 0 chr4 78969101 78969159 -123359188 + AT_rich Low_complexity Low_complexity 1 58 0 190 391 31 0 chr4 78969313 78969377 -123358970 + L3b LINE CR1 1513 1578 -5 709 161 15 0 chr4 78970202 78970339 -123358008 + L1MB2 LINE L1 5994 6132 -39 226 356 114 0 chr4 78970859 78970991 -123357356 + MIR3 SINE MIR 32 178 -30 609 180 17 90 chr4 78971340 78971518 -123356829 + L1M1 LINE L1 14 178 -7387 1081 139 0 0 chr4 78971529 78971680 -123356667 + AluY SINE Alu 141 291 -20 31226 112 11 9 chr4 78971681 78974234 -123354113 + L1P LINE L1 1 2568 -3578 223 49 49 0 chr4 78974234 78974275 -123354072 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 31226 112 11 9 chr4 78974275 78976647 -123351700 + L1P LINE L1 2568 4934 -1212 366 316 23 45 chr4 78978515 78978692 -123349655 - MIR SINE MIR -70 192 20 279 299 91 49 chr4 78978906 78979170 -123349177 + MARNA DNA Mariner 83 357 -229 264 322 89 7 chr4 78980107 78980253 -123348094 + MIR3 SINE MIR 36 193 -15 328 315 102 60 chr4 78980663 78981261 -123347086 + L2 LINE L2 2648 3276 -37 576 294 28 6 chr4 78982215 78982392 -123345955 + MIR SINE MIR 2 182 -80 523 285 88 21 chr4 78983573 78983766 -123344581 + MIR SINE MIR 2 207 -55 190 222 0 0 chr4 78983779 78983815 -123344532 + MIR SINE MIR 7 42 -220 2306 89 0 0 chr4 78983815 78984107 -123344240 - AluSg SINE Alu -18 292 1 548 175 95 36 chr4 78984109 78984246 -123344101 + MIR SINE MIR 93 237 -25 195 211 192 0 chr4 78984266 78984318 -123344029 + L2 LINE L2 3232 3293 -20 887 202 5 50 chr4 78985077 78985142 -123343205 - MER5A DNA MER1_type 0 189 123 2131 103 30 10 chr4 78985142 78985443 -123342904 + AluY SINE Alu 1 307 -4 887 202 5 50 chr4 78985443 78985575 -123342772 - MER5A DNA MER1_type -66 123 1 293 314 177 75 chr4 78985603 78986004 -123342343 + L2 LINE L2 2827 3268 -4 737 206 58 35 chr4 78986152 78986409 -123341938 + Charlie7 DNA MER1_type 1624 1886 -726 262 353 0 10 chr4 78986411 78986513 -123341834 + MIR SINE MIR 42 142 -66 924 102 34 0 chr4 78986522 78986669 -123341678 + L1MD3 LINE L1 7839 7990 -5 1054 262 53 48 chr4 78986713 78987091 -123341256 + L2 LINE L2 2919 3298 -15 212 257 71 79 chr4 78988072 78988212 -123340135 - L2 LINE L2 -10 3303 3165 300 307 99 0 chr4 78988350 78988451 -123339896 + MIR SINE MIR 42 152 -56 25 0 0 0 chr4 78989189 78989214 -123339133 + AT_rich Low_complexity Low_complexity 1 25 0 487 227 153 18 chr4 78989215 78989378 -123338969 - MIR SINE MIR 0 262 78 1501 262 54 33 chr4 78990343 78990581 -123337766 - L2 LINE L2 -5 3308 3076 2297 123 11 35 chr4 78990581 78990954 -123337393 - THE1B LTR MaLR 0 364 1 1501 262 54 33 chr4 78990954 78991310 -123337037 - L2 LINE L2 -237 3076 2701 377 280 30 15 chr4 78991471 78991603 -123336744 + MIR SINE MIR 79 212 -50 1018 162 95 52 chr4 78993387 78993597 -123334750 + MER20 DNA MER1_type 1 219 0 244 175 0 175 chr4 78995105 78995202 -123333145 + MIR SINE MIR 108 187 -75 186 43 0 0 chr4 78995750 78995773 -123332574 + (T)n Simple_repeat Simple_repeat 1 23 0 281 303 54 1 chr4 78997115 78997219 -123331128 - MIR SINE MIR -37 171 93 187 333 105 0 chr4 78997244 78997301 -123331046 - L2 LINE L2 -72 3200 3138 * 269 247 0 27 chr4 78997280 78997353 -123330994 - MIR SINE MIR -178 84 14 757 238 134 0 chr4 78997839 78998041 -123330306 - MIR SINE MIR -21 241 13 383 286 18 18 chr4 78998925 78999037 -123329310 - MLT2E LTR ERVL -485 143 32 636 299 10 5 chr4 78999383 78999587 -123328760 - ERVL-E LTR ERVL -330 5434 5230 534 240 0 8 chr4 79001644 79001765 -123326582 - MIR SINE MIR -122 140 21 522 234 182 0 chr4 79001777 79001931 -123326416 - MER5A DNA MER1_type -1 188 7 295 226 29 171 chr4 79002072 79002244 -123326103 + MER20B DNA MER1_type 63 217 -2 958 282 11 19 chr4 79002728 79002990 -123325357 + MIR SINE MIR 1 260 -2 266 196 89 0 chr4 79003050 79003106 -123325241 - MIR SINE MIR -86 176 116 555 203 68 0 chr4 79003155 79003273 -123325074 - MIR SINE MIR -1 261 136 6755 178 128 28 chr4 79003274 79004796 -123323551 + MER52A LTR ERV1 1 1755 0 309 274 8 77 chr4 79004804 79004921 -123323426 - MIR SINE MIR -131 131 23 2190 89 3 7 chr4 79005035 79005337 -123323010 - AluSx SINE Alu -11 301 1 386 337 16 27 chr4 79005433 79005617 -123322730 + MIR SINE MIR 47 228 -34 993 296 99 13 chr4 79007581 79007966 -123320381 - LTR16A LTR ERVL -17 433 16 1157 348 36 23 chr4 79008398 79009061 -123319286 - ERVL-E LTR ERVL -631 5023 4352 1165 283 18 7 chr4 79009096 79009375 -123318972 - HERV16 LTR ERVL -1910 3086 2805 939 199 6 6 chr4 79009379 79009540 -123318807 - MLT1E2 LTR MaLR 0 626 466 256 333 0 0 chr4 79009548 79009629 -123318718 - HERV16 LTR ERVL -4820 176 96 1386 269 61 37 chr4 79010375 79010866 -123317481 + MLT1J LTR MaLR 1 503 -8 4471 113 27 11 chr4 79012370 79013027 -123315320 + L1PA16 LINE L1 5491 6158 -8 652 285 101 0 chr4 79013058 79013286 -123315061 - MIR SINE MIR -10 252 2 1248 198 181 25 chr4 79013395 79013748 -123314599 + MLT1C LTR MaLR 15 422 -45 192 77 0 0 chr4 79013748 79013774 -123314573 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 2264 109 0 0 chr4 79013966 79014268 -123314079 + AluSc SINE Alu 1 302 -7 25 31 0 0 chr4 79014859 79014891 -123313456 + AT_rich Low_complexity Low_complexity 1 32 0 1985 198 20 8 chr4 79015045 79015403 -123312944 + MLT1A1 LTR MaLR 4 365 0 1377 235 82 16 chr4 79016653 79017181 -123311166 + MLT2E LTR ERVL 1 618 -10 373 283 91 64 chr4 79017218 79017405 -123310942 - MIR SINE MIR -7 255 64 184 380 65 0 chr4 79017628 79017720 -123310627 - MIR SINE MIR -77 185 88 233 372 107 0 chr4 79017929 79018050 -123310297 - L2 LINE L2 -3 3269 3136 2164 89 11 0 chr4 79018618 79018898 -123309449 + AluY SINE Alu 29 311 0 264 77 0 0 chr4 79020112 79020151 -123308196 + (TTA)n Simple_repeat Simple_repeat 1 39 0 37720 97 11 7 chr4 79020152 79021083 -123307264 - L1PA6 LINE L1 -18 6136 5211 216 0 0 0 chr4 79021083 79021107 -123307240 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 37720 97 11 7 chr4 79021107 79026280 -123302067 - L1PA6 LINE L1 -943 5211 11 466 191 206 15 chr4 79026663 79026794 -123301553 + MER5A DNA MER1_type 34 189 0 2053 225 34 28 chr4 79026861 79027359 -123300988 - LTR53 LTR ERVL -18 501 1 261 328 46 46 chr4 79027546 79027677 -123300670 - MIR SINE MIR -19 243 113 610 293 37 11 chr4 79028121 79028312 -123300035 + MIR SINE MIR 2 197 -65 345 47 0 0 chr4 79028773 79028816 -123299531 + (TC)n Simple_repeat Simple_repeat 1 43 0 272 271 0 0 chr4 79029926 79029985 -123298362 - MIR SINE MIR -1 261 203 1143 286 68 39 chr4 79030000 79030492 -123297855 + MLT1G1 LTR MaLR 26 548 -1 599 277 85 11 chr4 79030492 79030669 -123297678 - MIR SINE MIR -71 191 2 427 221 11 21 chr4 79031109 79031204 -123297143 + FLAM SINE Alu 39 132 -11 43250 38 21 1 chr4 79031884 79037918 -123290429 + L1PA2 LINE L1 1 6155 0 28 0 0 0 chr4 79037959 79037987 -123290360 + AT_rich Low_complexity Low_complexity 1 28 0 384 22 0 0 chr4 79038177 79038222 -123290125 + (TA)n Simple_repeat Simple_repeat 1 45 0 1552 105 5 0 chr4 79038222 79038432 -123289915 - L1PA7 LINE L1 -19 6135 5925 2577 148 19 2 chr4 79038794 79039219 -123289128 - L1P LINE L1 -2093 4053 3622 * 10619 96 6 10 chr4 79039206 79040743 -123287604 + L1P LINE L1 2530 4059 -2087 180 0 0 0 chr4 79042551 79042571 -123285776 + (TC)n Simple_repeat Simple_repeat 2 21 0 22982 70 5 5 chr4 79042573 79046448 -123281899 - L1PA6 LINE L1 -5 6149 2273 12227 52 1 0 chr4 79046558 79048858 -123279489 - L1PA4 LINE L1 -2 6153 3851 7121 40 8 0 chr4 79048858 79049752 -123278595 + L1PA4 LINE L1 2943 3843 -2303 628 114 0 0 chr4 79049753 79049841 -123278506 - L1PA6 LINE L1 -3860 2286 2199 1623 180 10 27 chr4 79049949 79050249 -123278098 + AluJo SINE Alu 1 295 -17 1884 151 51 11 chr4 79050249 79050621 -123277726 + L1MD1 LINE L1 5856 6242 0 383 291 85 7 chr4 79050621 79050762 -123277585 + MIR3 SINE MIR 23 174 -34 198 276 92 13 chr4 79051183 79051259 -123277088 - L2 LINE L2 -50 3263 3182 420 20 0 0 chr4 79053030 79053079 -123275268 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 201 297 69 30 chr4 79053758 79053859 -123274488 + MER5A DNA MER1_type 84 188 -1 * 673 263 60 18 chr4 79053859 79054075 -123274272 + MIR SINE MIR 8 232 -30 788 311 131 56 chr4 79054133 79054942 -123273405 - L3 LINE CR1 -448 1129 260 710 137 0 40 chr4 79055108 79055232 -123273115 - L1PB4 LINE L1 0 6156 6038 336 318 20 45 chr4 79055247 79055445 -123272902 + MER117 DNA MER1_type 5 197 0 1448 279 95 39 chr4 79055783 79056343 -123272004 + MLT1G1 LTR MaLR 5 595 0 21 0 0 0 chr4 79057403 79057424 -123270923 + AT_rich Low_complexity Low_complexity 1 21 0 2257 192 24 5 chr4 79058843 79059259 -123269088 - MSTB LTR MaLR 0 426 3 8688 185 27 5 chr4 79059260 79060874 -123267473 - MSTB-int LTR MaLR 0 1651 2 2341 167 44 17 chr4 79060877 79061290 -123267057 - MSTB LTR MaLR -2 424 1 276 100 0 0 chr4 79061641 79061681 -123266666 + (TG)n Simple_repeat Simple_repeat 1 40 0 2329 107 11 8 chr4 79063284 79063638 -123264709 - THE1A LTR MaLR 0 355 1 11876 86 8 1 chr4 79063638 79065207 -123263140 - THE1A-int LTR MaLR 0 1580 1 2173 133 8 25 chr4 79065207 79065568 -123262779 - THE1A LTR MaLR 0 355 1 252 297 10 30 chr4 79065765 79065866 -123262481 + MLT1J2 LTR MaLR 284 382 -68 453 259 93 0 chr4 79065970 79066078 -123262269 + MIR SINE MIR 7 124 -138 14102 179 42 11 chr4 79066078 79066872 -123261475 - L1MA4 LINE L1 0 6188 5420 186 43 0 0 chr4 79066872 79066895 -123261452 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 14102 179 42 11 chr4 79066895 79070569 -123257778 - L1MA4 LINE L1 -768 5420 1573 3659 260 22 25 chr4 79070589 79071833 -123256514 - L1MA4 LINE L1 -4098 936 250 631 251 58 6 chr4 79072792 79072963 -123255384 - L1MA4 LINE L1 -5775 180 1 365 280 76 0 chr4 79072964 79073096 -123255251 + MIR SINE MIR 118 259 -3 2347 83 0 0 chr4 79074325 79074614 -123253733 - AluY SINE Alu -10 301 13 237 304 128 0 chr4 79074687 79074789 -123253558 - MIR SINE MIR -60 148 34 214 306 0 42 chr4 79075033 79075105 -123253242 - L2 LINE L2 0 3313 3245 809 306 75 14 chr4 79076330 79076677 -123251670 - LTR16C LTR ERVL -35 456 89 21 0 0 0 chr4 79076852 79076873 -123251474 + AT_rich Low_complexity Low_complexity 1 21 0 1251 195 119 0 chr4 79076873 79077124 -123251223 - AluJo SINE Alu -31 281 1 184 345 122 39 chr4 79077579 79077915 -123250432 - L2 LINE L2 -346 2968 2605 235 214 71 0 chr4 79078038 79078094 -123250253 + MER91A DNA MER1_type 127 186 -10 255 61 0 0 chr4 79078110 79078143 -123250204 + (CA)n Simple_repeat Simple_repeat 2 34 0 375 311 93 20 chr4 79079184 79079335 -123249012 + MIR SINE MIR 11 172 -90 519 332 24 59 chr4 79079582 79079835 -123248512 + MIR SINE MIR 2 245 -17 1799 181 3 0 chr4 79080048 79080340 -123248007 - AluJb SINE Alu -12 300 8 11419 79 9 1 chr4 79080524 79082859 -123245488 - L1PA7 LINE L1 0 6154 3803 878 249 225 15 chr4 79083263 79083695 -123244652 + LTR50 LTR ERVL 1 606 -189 488 365 63 0 chr4 79085776 79085998 -123242349 - MIR SINE MIR -2 260 25 1516 160 63 24 chr4 79086028 79086110 -123242237 - MER2 DNA MER2_type 0 344 267 2371 97 3 0 chr4 79086110 79086421 -123241926 + AluSp SINE Alu 1 312 -1 1516 160 63 24 chr4 79086421 79086669 -123241678 - MER2 DNA MER2_type -77 267 1 190 314 0 0 chr4 79087173 79087224 -123241123 - MIR SINE MIR -114 148 98 2178 92 20 7 chr4 79087511 79087803 -123240544 - AluSg SINE Alu -14 296 1 587 298 102 7 chr4 79087828 79088051 -123240296 + MIR SINE MIR 1 241 -21 1143 275 94 23 chr4 79088573 79089050 -123239297 + MLT1J LTR MaLR 1 511 0 1149 207 78 41 chr4 79089388 79089707 -123238640 + MER2 DNA MER2_type 2 332 -13 23 68 0 0 chr4 79090272 79090316 -123238031 + AT_rich Low_complexity Low_complexity 1 44 0 611 54 0 67 chr4 79090316 79090465 -123237882 + (TA)n Simple_repeat Simple_repeat 2 140 0 1143 58 0 7 chr4 79090465 79090604 -123237743 - AluYb8 SINE Alu -180 138 1 872 264 59 43 chr4 79091748 79092051 -123236296 + MSTD LTR MaLR 1 308 -88 4491 210 44 48 chr4 79092279 79093454 -123234893 - L1MC4 LINE L1 -160 7882 6713 1539 148 4 0 chr4 79094555 79094812 -123233535 - Tigger2 DNA MER2_type 0 2718 2461 4222 151 18 1 chr4 79094874 79095610 -123232737 - Tigger2 DNA MER2_type -1969 749 2 248 181 60 23 chr4 79095638 79095771 -123232576 + (TTATA)n Simple_repeat Simple_repeat 2 139 0 12968 196 27 20 chr4 79096096 79101874 -123226473 + L1P5 LINE L1 116 6184 -683 2523 70 0 0 chr4 79101874 79102176 -123226171 + AluY SINE Alu 1 302 -9 12968 196 27 20 chr4 79102176 79102501 -123225846 + L1P5 LINE L1 6184 6505 -362 306 289 19 10 chr4 79102513 79102617 -123225730 + L1MC4 LINE L1 6615 6719 -1323 * 343 267 29 19 chr4 79102549 79102654 -123225693 - L1MC4 LINE L1 -1323 6719 6614 453 219 0 0 chr4 79102663 79102777 -123225570 + (TA)n Simple_repeat Simple_repeat 1 114 0 2385 96 24 21 chr4 79102786 79103161 -123225186 + L1PB1 LINE L1 5776 6151 0 26 0 0 0 chr4 79104960 79104986 -123223361 + AT_rich Low_complexity Low_complexity 1 26 0 343 272 48 10 chr4 79106883 79106986 -123221361 + MER5B DNA MER1_type 4 110 -68 2118 134 12 77 chr4 79107472 79107832 -123220515 + MLT1B LTR MaLR 1 383 -7 405 0 0 0 chr4 79107832 79107877 -123220470 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2118 134 12 77 chr4 79107877 79107888 -123220459 + MLT1B LTR MaLR 383 346 -44 2112 110 7 0 chr4 79107888 79108169 -123220178 - AluSx SINE Alu -29 283 1 2118 134 12 77 chr4 79108169 79108213 -123220134 + MLT1B LTR MaLR 345 390 0 5713 202 29 21 chr4 79108726 79110281 -123218066 + L1PA13 LINE L1 1 1660 -5127 2509 93 3 0 chr4 79110579 79110935 -123217412 + L1P3 LINE L1 742 1098 -5363 * 2856 222 15 3 chr4 79110933 79111657 -123216690 - L1PA13 LINE L1 -2965 3832 3100 4422 104 3 5 chr4 79111657 79112283 -123216064 - HSMAR1 DNA Mariner 0 1287 663 2943 94 7 20 chr4 79112276 79112722 -123215625 - HSMAR1 DNA Mariner -847 440 1 * 4435 190 21 4 chr4 79112722 79114154 -123214193 - L1PA13 LINE L1 -3695 3102 1643 2119 138 7 0 chr4 79114154 79114450 -123213897 - AluSp SINE Alu -15 298 1 8472 78 5 8 chr4 79114454 79116418 -123211929 - L1PA7 LINE L1 -2 6152 4192 1005 135 0 0 chr4 79116518 79116674 -123211673 + L1PA13 LINE L1 5997 6152 -11 1630 243 15 55 chr4 79118410 79118936 -123209411 - LTR40a LTR ERVL -14 505 1 421 299 44 87 chr4 79119054 79119374 -123208973 + HAL1 LINE L1 501 795 -1712 1951 136 0 4 chr4 79119374 79119702 -123208645 - AluSc SINE Alu 0 328 2 421 299 44 87 chr4 79119702 79119875 -123208472 + HAL1 LINE L1 795 974 -1533 * 478 161 25 0 chr4 79119874 79119955 -123208392 + L1MDa LINE L1 17 99 -6441 * 483 131 101 0 chr4 79119938 79120037 -123208310 - L1MCa LINE L1 -5468 1096 988 1584 215 54 87 chr4 79120100 79120695 -123207652 - L1MCa LINE L1 -5058 987 413 2101 148 0 3 chr4 79121371 79121682 -123206665 - AluSx SINE Alu -2 310 1 22 35 0 0 chr4 79121724 79121753 -123206594 + AT_rich Low_complexity Low_complexity 1 29 0 583 306 35 5 chr4 79125110 79125309 -123203038 - L2 LINE L2 -824 2490 2286 853 266 25 52 chr4 79125312 79125598 -123202749 + L2 LINE L2 2331 2608 -706 41261 48 3 3 chr4 79127177 79133336 -123195011 - L1PA4 LINE L1 -3 6152 1 2248 119 19 11 chr4 79133535 79133905 -123194442 + L1MA2 LINE L1 5932 6304 0 28338 110 9 16 chr4 79133919 79139672 -123188675 + L1PA7 LINE L1 748 6469 0 42 0 0 0 chr4 79139785 79139827 -123188520 + AT_rich Low_complexity Low_complexity 1 42 0 1885 188 14 3 chr4 79140020 79140382 -123187965 - MER47A DNA MER2_type 0 366 1 2270 277 70 32 chr4 79140519 79141751 -123186596 - L1MEc LINE L1 -4872 1498 255 925 243 94 43 chr4 79141751 79142167 -123186180 + LTR68 LTR ERV1 1 437 -303 942 173 19 6 chr4 79142572 79142734 -123185613 + AluJo SINE Alu 124 287 -25 234 138 185 0 chr4 79142742 79142807 -123185540 + MLT1L LTR MaLR 535 611 -4 195 311 172 33 chr4 79142872 79142994 -123185353 + L2 LINE L2 3132 3270 -2 491 310 13 29 chr4 79143076 79143251 -123185096 - MIR SINE MIR -59 203 33 240 35 0 0 chr4 79143353 79143382 -123184965 + (AATTG)n Simple_repeat Simple_repeat 2 30 0 205 254 16 48 chr4 79146059 79146122 -123182225 + L2 LINE L2 2915 2975 -339 372 307 198 10 chr4 79146442 79146634 -123181713 - MIR SINE MIR -16 246 19 186 43 0 0 chr4 79147602 79147625 -123180722 + (TAA)n Simple_repeat Simple_repeat 1 23 0 186 43 0 0 chr4 79147679 79147702 -123180645 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 489 299 9 55 chr4 79147702 79147908 -123180439 - L2 LINE L2 -17 3296 3099 402 302 7 20 chr4 79148412 79148561 -123179786 - L2 LINE L2 -339 2975 2829 2786 237 220 18 chr4 79148563 79149760 -123178587 + L1MC4 LINE L1 6459 7896 -146 28 0 0 0 chr4 79149807 79149835 -123178512 + AT_rich Low_complexity Low_complexity 1 28 0 2315 129 0 0 chr4 79149935 79150298 -123178049 + L1P LINE L1 1 363 -5783 36 70 0 0 chr4 79150302 79150373 -123177974 + AT_rich Low_complexity Low_complexity 1 71 0 225 135 53 53 chr4 79150381 79150551 -123177796 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 240 161 39 39 chr4 79150572 79150727 -123177620 + (TA)n Simple_repeat Simple_repeat 2 156 0 431 240 0 10 chr4 79151624 79151720 -123176627 - MIR SINE MIR -111 151 57 7569 28 5 1 chr4 79151730 79153159 -123175188 + L1PA3 LINE L1 4722 6154 -1 605 224 14 7 chr4 79153249 79153396 -123174951 - L1MA10 LINE L1 -12 6322 6175 2758 195 28 10 chr4 79153405 79154230 -123174117 - L1ME2 LINE L1 -179 5985 5148 326 276 0 0 chr4 79154223 79154321 -123174026 - L1ME2 LINE L1 -3129 3017 2920 * 325 313 46 15 chr4 79154469 79154600 -123173747 - MIR SINE MIR -108 154 20 2018 153 0 0 chr4 79154696 79154991 -123173356 + AluSx SINE Alu 1 295 -17 246 324 0 65 chr4 79155241 79155349 -123172998 - MER5A DNA MER1_type -75 114 14 442 340 20 24 chr4 79155352 79155646 -123172701 - L2 LINE L2 -436 2878 2586 341 286 112 6 chr4 79156563 79156724 -123171623 + MER5B DNA MER1_type 1 178 0 193 211 0 0 chr4 79156973 79157011 -123171336 + L2 LINE L2 2694 2731 -583 2319 206 45 45 chr4 79157011 79157156 -123171191 - Zaphod DNA AcHobo -1 4030 3886 7268 43 9 0 chr4 79157156 79158376 -123169971 + L1PA5 LINE L1 4926 6152 -2 2319 206 45 45 chr4 79158376 79158786 -123169561 - Zaphod DNA AcHobo -145 3886 3472 797 175 0 0 chr4 79158786 79158912 -123169435 - FLAM_C SINE Alu -7 126 1 2319 206 45 45 chr4 79158912 79159096 -123169251 - Zaphod DNA AcHobo -558 3473 3290 378 0 0 0 chr4 79159119 79159161 -123169186 + (TG)n Simple_repeat Simple_repeat 2 43 0 286 196 18 0 chr4 79159165 79159221 -123169126 - MER115 DNA AcHobo -636 57 1 369 291 122 26 chr4 79159229 79159487 -123168860 + L2 LINE L2 2741 3023 -249 622 305 51 0 chr4 79159493 79159690 -123168657 + MIR SINE MIR 2 208 -54 691 264 136 4 chr4 79159759 79160009 -123168338 + L2 LINE L2 3021 3303 -10 2071 206 42 0 chr4 79161213 79161710 -123166637 + Tigger7 DNA MER2_type 1 2485 -2 302 276 25 116 chr4 79162182 79162381 -123165966 + MER91A DNA MER1_type 1 181 -15 297 374 35 0 chr4 79162490 79162605 -123165742 + L2 LINE L2 3116 3234 -38 238 250 0 0 chr4 79162642 79162694 -123165653 + (TGGA)n Simple_repeat Simple_repeat 1 52 0 377 208 0 69 chr4 79162909 79163010 -123165337 + LTR33 LTR ERVL 1 94 -427 1814 237 66 30 chr4 79163967 79164633 -123163714 - L1MC4a LINE L1 -1762 6046 5357 292 173 0 0 chr4 79164634 79164686 -123163661 + LTR67 LTR ERVL 480 531 -26 225 0 0 0 chr4 79164840 79164865 -123163482 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1035 206 19 12 chr4 79164870 79165127 -123163220 - L1 LINE L1 -997 5149 4891 2213 53 14 3 chr4 79165152 79165437 -123162910 - L1PA4 LINE L1 0 6155 5868 813 40 0 0 chr4 79165437 79165538 -123162809 + L1PA4 LINE L1 5779 5879 -276 2030 257 59 55 chr4 79167917 79169003 -123159344 - L1MC4 LINE L1 -3 8039 6950 2341 188 9 21 chr4 79170123 79170554 -123157793 - MSTB LTR MaLR 0 426 1 5451 186 20 5 chr4 79170559 79171597 -123156750 - MSTB-int LTR MaLR -7 1644 591 13753 201 32 11 chr4 79171647 79174221 -123154126 + L1PB1 LINE L1 6 2525 -4367 2298 108 0 7 chr4 79174221 79174527 -123153820 + AluY SINE Alu 1 304 -7 13753 201 32 11 chr4 79174527 79178510 -123149837 + L1PB1 LINE L1 2525 6892 0 200 163 23 0 chr4 79178523 79178566 -123149781 + (CATATA)n Simple_repeat Simple_repeat 1 44 0 1780 203 80 51 chr4 79178981 79179470 -123148877 + MLT1D LTR MaLR 3 505 0 1827 117 131 22 chr4 79179577 79179937 -123148410 + MSTA LTR MaLR 1 399 -29 1884 130 0 8 chr4 79179952 79180214 -123148133 - AluSx SINE Alu -52 260 1 238 167 0 0 chr4 79180214 79180256 -123148091 + MSTA LTR MaLR 385 426 0 436 330 50 50 chr4 79180650 79180908 -123147439 + MIR SINE MIR 5 262 0 1057 149 32 5 chr4 79181010 79181198 -123147149 + MER20 DNA MER1_type 26 218 -1 291 73 0 0 chr4 79181413 79181454 -123146893 + L1P3 LINE L1 725 765 -5696 * 5984 169 22 31 chr4 79181447 79182742 -123145605 + L1P3 LINE L1 1000 2282 -4179 * 40098 39 22 1 chr4 79182740 79188768 -123139579 - L1PA2 LINE L1 -1 6154 1 4536 119 0 1 chr4 79188767 79189488 -123138859 + L1P3 LINE L1 2265 2984 -3477 * 1240 114 0 0 chr4 79189494 79189704 -123138643 + L1P3 LINE L1 3548 3757 -2704 17371 112 0 1 chr4 79189704 79193169 -123135178 + L1PA7 LINE L1 2673 6144 -10 466 249 138 36 chr4 79193900 79193934 -123134413 - MLT1L LTR MaLR -131 484 455 366 42 0 0 chr4 79193934 79193982 -123134365 + (TTTG)n Simple_repeat Simple_repeat 3 50 0 466 249 138 36 chr4 79193982 79194172 -123134175 - MLT1L LTR MaLR -160 455 237 47 33 0 0 chr4 79194659 79194720 -123133627 + AT_rich Low_complexity Low_complexity 1 61 0 354 249 31 6 chr4 79194798 79194993 -123133354 + (TA)n Simple_repeat Simple_repeat 1 199 0 482 263 118 43 chr4 79195775 79195961 -123132386 + MIR SINE MIR 52 251 -11 228 340 48 0 chr4 79198173 79198276 -123130071 + MIR SINE MIR 129 236 -26 355 222 44 11 chr4 79198312 79198402 -123129945 + MER5B DNA MER1_type 8 100 -78 28 0 0 0 chr4 79198415 79198443 -123129904 + AT_rich Low_complexity Low_complexity 1 28 0 443 277 20 0 chr4 79198479 79198580 -123129767 + L2 LINE L2 3170 3272 0 3826 200 26 51 chr4 79198756 79199750 -123128597 - LTR5 LTR ERVK 0 969 1 306 258 43 32 chr4 79201087 79201180 -123127167 + MIR SINE MIR 36 129 -133 230 208 0 0 chr4 79201237 79201285 -123127062 + MIR SINE MIR 151 198 -64 180 0 0 0 chr4 79203804 79203824 -123124523 + (TC)n Simple_repeat Simple_repeat 2 21 0 22900 70 5 5 chr4 79203826 79207701 -123120646 - L1PA6 LINE L1 -5 6149 2273 6622 26 1 1 chr4 79207811 79208638 -123119709 - L1PA4 LINE L1 -2 6153 5328 220 170 64 0 chr4 79208708 79208755 -123119592 - L2 LINE L2 -1 3312 3263 27 0 0 0 chr4 79208831 79208858 -123119489 + AT_rich Low_complexity Low_complexity 1 27 0 595 207 14 21 chr4 79210284 79210429 -123117918 - MIR SINE MIR -38 224 81 398 255 68 0 chr4 79210473 79210585 -123117762 - MIR SINE MIR -60 148 29 2051 89 60 0 chr4 79212267 79212607 -123115740 - AluSq SINE Alu 0 356 1 1594 70 9 0 chr4 79213234 79213448 -123114899 - L1PA4 LINE L1 -3 6152 5937 24323 52 1 5 chr4 79213461 79217344 -123111003 - L1PA4 LINE L1 -14 6141 2273 12201 50 2 0 chr4 79217454 79219753 -123108594 - L1PA4 LINE L1 -2 6153 3851 6811 40 8 0 chr4 79219753 79220647 -123107700 + L1PA4 LINE L1 2943 3843 -2303 12949 134 21 20 chr4 79220648 79222921 -123105426 - L1PA4 LINE L1 -3860 2286 11 1399 229 0 20 chr4 79222940 79223237 -123105110 - AluJo SINE Alu -21 291 1 875 133 0 15 chr4 79223257 79223392 -123104955 - FLAM_C SINE Alu 0 133 1 594 165 0 0 chr4 79223398 79223525 -123104822 + CT-rich Low_complexity Low_complexity 2 128 0 189 0 0 0 chr4 79223525 79223546 -123104801 + (CA)n Simple_repeat Simple_repeat 1 21 0 344 283 97 0 chr4 79223954 79224067 -123104280 + L2 LINE L2 3190 3313 0 188 196 65 0 chr4 79224646 79224692 -123103655 + MIR SINE MIR 86 134 -74 240 305 52 13 chr4 79225103 79225257 -123103090 - L1MC/D LINE L1 -1900 5908 5749 454 320 43 11 chr4 79225289 79225570 -123102777 - L1MC/D LINE L1 -462 5659 5370 1290 192 36 78 chr4 79225881 79226355 -123101992 + LTR37B LTR ERV1 15 468 0 314 323 30 0 chr4 79226364 79226463 -123101884 - L1MC/D LINE L1 -1161 4985 4884 702 286 42 35 chr4 79226581 79226749 -123101598 - L1MC/D LINE L1 -1324 4822 4657 1730 184 0 3 chr4 79226749 79227042 -123101305 - AluJo SINE Alu -20 292 1 702 286 42 35 chr4 79227042 79227439 -123100908 - L1MC/D LINE L1 -1489 4657 4253 1632 183 13 17 chr4 79229185 79229485 -123098862 + MER70B LTR ERVL 181 479 -99 239 257 54 14 chr4 79229533 79229607 -123098740 + L3 LINE CR1 1498 1574 -3 2161 189 54 7 chr4 79231463 79231870 -123096477 + MSTB LTR MaLR 1 426 0 7875 189 48 5 chr4 79231870 79233448 -123094899 + MSTB-int LTR MaLR 1 1646 -5 2302 164 31 22 chr4 79233463 79233879 -123094468 + MSTB LTR MaLR 3 422 -4 553 312 129 19 chr4 79234838 79235255 -123093092 + L2 LINE L2 1801 2263 -1051 36642 80 9 6 chr4 79235273 79239565 -123088782 + L1PA5 LINE L1 4 4325 -1829 5345 77 22 7 chr4 79239565 79240277 -123088070 + SVA Other Other 664 1386 0 36642 80 9 6 chr4 79240277 79242112 -123086235 + L1PA5 LINE L1 4325 6152 -2 467 263 110 22 chr4 79242121 79242349 -123085998 + L2 LINE L2 2275 2522 -792 270 244 33 67 chr4 79242404 79242494 -123085853 - L2 LINE L2 -37 3235 3149 339 242 203 16 chr4 79242596 79242724 -123085623 + L1ME4a LINE L1 5954 6105 -16 298 310 60 39 chr4 79243083 79243315 -123085032 + L2 LINE L2 1712 1948 -1366 216 341 0 24 chr4 79243321 79243403 -123084944 + L2 LINE L2 2923 3002 -270 1679 210 22 0 chr4 79243548 79243914 -123084433 + L1ME1 LINE L1 5582 5955 -211 2077 139 10 0 chr4 79243982 79244291 -123084056 + AluSx SINE Alu 1 312 0 893 239 40 5 chr4 79244304 79244526 -123083821 + L1ME1 LINE L1 5932 6161 -5 21 0 0 0 chr4 79244705 79244726 -123083621 + AT_rich Low_complexity Low_complexity 1 21 0 208 286 0 79 chr4 79244726 79244789 -123083558 + L2 LINE L2 3134 3191 -81 247 276 105 9 chr4 79246290 79246395 -123081952 - MIR SINE MIR -70 192 78 727 157 0 45 chr4 79248035 79248169 -123080178 + FLAM_A SINE Alu 4 131 -2 555 270 101 23 chr4 79248471 79248778 -123079569 - LTR16C LTR ERVL 0 491 161 310 301 52 44 chr4 79249105 79249241 -123079106 + L2 LINE L2 2926 3062 -210 198 328 15 0 chr4 79249384 79249451 -123078896 + L2 LINE L2 3208 3275 -38 186 43 0 0 chr4 79250714 79250737 -123077610 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 636 346 54 54 chr4 79251112 79251595 -123076752 + L2 LINE L2 2806 3288 -25 576 182 42 0 chr4 79252223 79252366 -123075981 - AluSc SINE Alu -6 303 155 2104 107 3 14 chr4 79252752 79253043 -123075304 - AluSc SINE Alu -21 288 1 27269 118 26 62 chr4 79253309 79255750 -123072597 + L1PA7 LINE L1 4 2531 -3623 2105 84 24 30 chr4 79255750 79256046 -123072301 + AluY SINE Alu 1 294 -17 27269 118 26 62 chr4 79256046 79259998 -123068349 + L1PA7 LINE L1 2531 6152 -2 504 302 34 17 chr4 79260277 79260456 -123067891 - MIR SINE MIR -34 228 47 182 307 23 45 chr4 79260760 79260848 -123067499 + L3 LINE CR1 1009 1094 -483 658 339 71 23 chr4 79260916 79261226 -123067121 + L3 LINE CR1 1249 1573 -4 1826 169 79 81 chr4 79261267 79261771 -123066576 - MLT1D LTR MaLR 0 505 3 333 232 72 14 chr4 79262246 79262384 -123065963 - MER117 DNA MER1_type -49 148 3 994 291 53 53 chr4 79262655 79263180 -123065167 - MLT1K LTR MaLR -50 538 14 349 318 113 33 chr4 79263521 79263672 -123064675 + MIR SINE MIR 28 144 -64 471 229 72 106 chr4 79263716 79263952 -123064395 + MLT1H LTR MaLR 44 271 -278 5880 62 5 0 chr4 79264021 79264793 -123063554 - L1PA6 LINE L1 -15 6139 5364 407 266 78 36 chr4 79264793 79264985 -123063362 + MLT1H LTR MaLR 338 537 -18 186 71 0 0 chr4 79265894 79265922 -123062425 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 2273 99 0 3 chr4 79266035 79266339 -123062008 - AluY SINE Alu -8 303 1 405 228 0 0 chr4 79268049 79268141 -123060206 + L1ME3A LINE L1 4456 4547 -1599 348 254 138 27 chr4 79268408 79268632 -123059715 + L1ME3A LINE L1 5689 5937 -233 24 0 0 0 chr4 79269471 79269495 -123058852 + AT_rich Low_complexity Low_complexity 1 24 0 1002 230 22 57 chr4 79270407 79270724 -123057623 - L2 LINE L2 0 3313 3008 311 177 0 0 chr4 79270891 79270953 -123057394 + L1ME LINE L1 5757 5818 -303 489 341 108 22 chr4 79271504 79271956 -123056391 + L1M4 LINE L1 2736 3226 -2920 2188 116 39 36 chr4 79272098 79272461 -123055886 + THE1B LTR MaLR 1 364 0 6025 97 3 0 chr4 79273457 79274553 -123053794 - L1PA8A LINE L1 -2 6129 5021 556 131 20 0 chr4 79274553 79274652 -123053695 - L1PA8A LINE L1 -57 6074 5974 357 121 0 0 chr4 79274655 79274713 -123053634 - L1PA8A LINE L1 -1153 4993 4936 874 236 212 3 chr4 79275837 79276223 -123052124 + MLT1C LTR MaLR 1 467 0 785 189 0 0 chr4 79276915 79277079 -123051268 + L1MA4 LINE L1 6020 6183 -117 1458 51 0 0 chr4 79277079 79277257 -123051090 + L1PA5 LINE L1 5977 6154 0 702 149 15 0 chr4 79277258 79277392 -123050955 + L1MA4 LINE L1 6160 6295 -5 293 209 0 15 chr4 79277468 79277535 -123050812 + MLT1L LTR MaLR 1 66 -549 809 293 15 75 chr4 79277646 79278035 -123050312 + MLT1J LTR MaLR 1 366 -145 329 242 186 31 chr4 79278212 79278406 -123049941 + MLT1J LTR MaLR 288 511 0 1808 152 52 3 chr4 79278614 79278923 -123049424 - MLT1C LTR MaLR -2 465 142 599 282 39 34 chr4 79278973 79279331 -123049016 + HAL1 LINE L1 1211 1570 -937 365 256 67 35 chr4 79279414 79279554 -123048793 + MLT1L LTR MaLR 139 281 -334 726 33 0 0 chr4 79279554 79279645 -123048702 + L1PA4 LINE L1 6062 6152 -3 365 256 67 35 chr4 79279645 79279671 -123048676 + MLT1L LTR MaLR 281 305 -310 28 0 0 0 chr4 79279671 79279699 -123048648 + AT_rich Low_complexity Low_complexity 1 28 0 670 238 0 6 chr4 79279832 79280004 -123048343 - MER105 DNA DNA -3 201 31 691 242 20 0 chr4 79280059 79280212 -123048135 + MER58B DNA MER1_type 183 338 -3 274 282 94 0 chr4 79280330 79280415 -123047932 + MIR SINE MIR 170 262 0 391 218 128 15 chr4 79280444 79280577 -123047770 - MLT1H LTR MaLR -81 468 321 724 308 35 4 chr4 79280885 79281112 -123047235 - MLT1H LTR MaLR -296 253 20 805 245 25 112 chr4 79282069 79282355 -123045992 - MIR SINE MIR 0 262 2 349 279 68 6 chr4 79283244 79283405 -123044942 + ERVL LTR ERVL 3265 3435 -2329 1633 311 82 26 chr4 79283488 79284516 -123043831 + ERVL LTR ERVL 3569 4762 -1002 2671 141 5 23 chr4 79284516 79284957 -123043390 - Tigger2a DNA MER2_type -1 433 1 1633 311 82 26 chr4 79284957 79285543 -123042804 + ERVL LTR ERVL 4762 5313 -451 398 255 68 0 chr4 79286419 79286531 -123041816 + MIR SINE MIR 29 148 -60 595 207 14 21 chr4 79286575 79286720 -123041627 + MIR SINE MIR 81 224 -38 27 0 0 0 chr4 79288145 79288172 -123040175 + AT_rich Low_complexity Low_complexity 1 27 0 220 170 64 0 chr4 79288248 79288295 -123040052 + L2 LINE L2 3263 3312 -1 7076 16 0 0 chr4 79288380 79289186 -123039161 + L1PA4 LINE L1 5342 6147 -8 187 226 48 48 chr4 79289671 79289733 -123038614 + MIR SINE MIR 38 99 -109 223 284 86 25 chr4 79289955 79290012 -123038335 + MIR3 SINE MIR 101 166 -42 1171 211 113 30 chr4 79290012 79290349 -123037998 + MLT1A1 LTR MaLR 1 365 0 223 284 86 25 chr4 79290349 79290372 -123037975 + MIR3 SINE MIR 166 186 -22 197 81 0 27 chr4 79290918 79290955 -123037392 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 289 295 53 11 chr4 79291481 79291576 -123036771 - L2 LINE L2 -1 3271 3173 613 279 78 12 chr4 79291707 79291951 -123036396 - MLT1L LTR MaLR -4 611 352 254 256 44 11 chr4 79291978 79292069 -123036278 - MLT1J LTR MaLR -342 169 110 255 61 0 0 chr4 79293576 79293609 -123034738 + (CA)n Simple_repeat Simple_repeat 1 33 0 497 359 11 0 chr4 79294333 79294514 -123033833 - L2 LINE L2 -339 2975 2793 4002 63 0 2 chr4 79294537 79295042 -123033305 + L1PA7 LINE L1 5649 6152 -2 992 196 0 11 chr4 79295070 79295254 -123033093 + AluJb SINE Alu 120 301 -11 197 283 38 0 chr4 79295257 79295310 -123033037 - MIR SINE MIR -195 67 13 706 256 135 52 chr4 79295539 79296019 -123032328 - LTR33A LTR ERVL -2 521 2 7451 86 35 2 chr4 79296341 79297429 -123030918 + MER41A-int LTR ERV1 4821 5944 -2 4113 91 7 6 chr4 79297429 79297977 -123030370 + MER41A LTR ERV1 1 549 -5 838 191 27 14 chr4 79297981 79298128 -123030219 - AluJo SINE Alu -162 150 2 1139 226 24 55 chr4 79298326 79298654 -123029693 - MLT1A2 LTR MaLR -9 365 48 430 318 103 75 chr4 79298725 79299124 -123029223 + L2 LINE L2 2808 3217 -55 251 290 0 0 chr4 79299657 79299719 -123028628 + GA-rich Low_complexity Low_complexity 4 65 0 228 298 0 88 chr4 79299799 79299913 -123028434 + MIR SINE MIR 20 123 -85 5453 161 120 29 chr4 79301036 79302161 -123026186 - L1P LINE L1 -4909 1237 11 30933 71 6 3 chr4 79303404 79308109 -123020238 + L1PA5 LINE L1 1321 6120 -34 8833 42 2 2 chr4 79308401 79309507 -123018840 - L1P LINE L1 -2697 3449 2344 414 53 0 18 chr4 79309607 79309664 -123018683 - L1P LINE L1 -3769 2377 2322 347 182 26 13 chr4 79311625 79311702 -123016645 + MLT1I LTR MaLR 314 391 -18 343 264 151 13 chr4 79311796 79311955 -123016392 + MLT1I LTR MaLR 130 310 -99 197 315 81 35 chr4 79312773 79312970 -123015377 + L2 LINE L2 2456 2661 -653 34782 34 0 0 chr4 79313173 79318101 -123010246 + L1PA2 LINE L1 1227 6155 0 2253 172 0 22 chr4 79318162 79318529 -123009818 - MLT1A1 LTR MaLR -2 363 5 1127 287 19 50 chr4 79318547 79318969 -123009378 + MLT1I LTR MaLR 1 409 0 30 27 0 0 chr4 79319038 79319075 -123009272 + AT_rich Low_complexity Low_complexity 1 37 0 822 159 0 8 chr4 79319075 79319201 -123009146 + FLAM_C SINE Alu 1 125 -18 28 0 0 0 chr4 79319201 79319229 -123009118 + AT_rich Low_complexity Low_complexity 1 28 0 10595 161 36 13 chr4 79319229 79322719 -123005628 - L1MA5A LINE L1 -19 6920 1477 9142 226 42 27 chr4 79322850 79325341 -123003006 - L1 LINE L1 -2385 4403 5 248 295 64 83 chr4 79325467 79325623 -123002724 + MIR SINE MIR 28 180 -82 2082 224 36 67 chr4 79325628 79326209 -123002138 + MLT1E LTR MaLR 1 563 -30 472 311 91 13 chr4 79326982 79327225 -123001122 - MIR SINE MIR 0 262 3 416 247 0 0 chr4 79327374 79327467 -123000880 - MLT1J LTR MaLR 0 511 419 545 61 37 0 chr4 79327906 79327988 -123000359 - L1PA8 LINE L1 0 6487 6403 12268 85 24 36 chr4 79328091 79330502 -122997845 - L1PA8 LINE L1 -266 6203 3825 * 12906 119 7 53 chr4 79330488 79333350 -122994997 - L1PA8 LINE L1 -3605 2856 6 667 273 87 47 chr4 79333350 79333625 -122994722 + MLT1J LTR MaLR 23 308 -203 2722 198 24 16 chr4 79334215 79334726 -122993621 - MLT2B2 LTR ERVL 0 515 1 901 291 162 14 chr4 79334804 79335299 -122993048 + MLT1L LTR MaLR 38 605 -10 32 57 0 0 chr4 79335365 79335418 -122992929 + AT_rich Low_complexity Low_complexity 1 53 0 528 231 169 44 chr4 79336535 79336673 -122991674 + MER5A DNA MER1_type 10 172 -17 2406 121 19 58 chr4 79336673 79337052 -122991295 - THE1B LTR MaLR 0 364 1 528 231 169 44 chr4 79337052 79337073 -122991274 + MER5A DNA MER1_type 172 189 0 951 241 70 41 chr4 79337255 79337525 -122990822 + LTR16C LTR ERVL 214 491 0 1543 199 48 54 chr4 79337572 79337943 -122990404 - MLT1A2 LTR MaLR -4 370 2 202 226 19 19 chr4 79338157 79338210 -122990137 - MIR SINE MIR -135 73 21 289 270 122 17 chr4 79339736 79339851 -122988496 + LTR16C LTR ERVL 261 387 -104 263 304 5 87 chr4 79340283 79340467 -122987880 + HERVL LTR ERVL 418 586 -5068 892 136 0 5 chr4 79340592 79340741 -122987606 + MSTB LTR MaLR 1 144 -288 2180 95 14 10 chr4 79340746 79341040 -122987307 + AluSq SINE Alu 1 295 -18 2533 90 128 2 chr4 79342158 79342557 -122985790 - L1MA8 LINE L1 -5 6286 5838 22 0 0 0 chr4 79342722 79342744 -122985603 + AT_rich Low_complexity Low_complexity 1 22 0 402 211 79 53 chr4 79343527 79343641 -122984706 - MER33 DNA MER1_type -207 117 1 392 263 0 0 chr4 79343716 79343815 -122984532 + MIR SINE MIR 162 260 -2 649 300 14 29 chr4 79343969 79344179 -122984168 + MIR SINE MIR 36 242 -20 216 241 0 0 chr4 79344181 79344239 -122984108 + (TTA)n Simple_repeat Simple_repeat 2 59 0 413 205 0 51 chr4 79344941 79345058 -122983289 + LTR33A LTR ERVL 411 521 -2 2025 121 6 44 chr4 79345214 79345529 -122982818 - AluSp SINE Alu -10 303 1 1892 222 42 26 chr4 79346384 79346957 -122981390 + L1MB8 LINE L1 3517 4098 -2048 2528 205 60 2 chr4 79346970 79347488 -122980859 + L1PB1 LINE L1 1 548 -6315 1025 198 82 119 chr4 79347985 79348364 -122979983 + MLT1A1 LTR MaLR 1 365 0 208 193 0 35 chr4 79348477 79348534 -122979813 + GA-rich Low_complexity Low_complexity 1 55 0 212 258 258 0 chr4 79349062 79349159 -122979188 - MIR SINE MIR -24 238 117 2485 103 0 0 chr4 79349814 79350124 -122978223 - AluSx SINE Alu -2 310 1 2938 167 14 2 chr4 79351134 79351777 -122976570 + L1MB8 LINE L1 5174 5825 -353 1455 148 56 20 chr4 79351777 79352027 -122976320 + AluJo SINE Alu 1 259 -53 26903 45 36 2 chr4 79353887 79357471 -122970876 + L1P LINE L1 1 3706 -2440 13527 146 56 8 chr4 79357572 79363272 -122965075 + L1PB1 LINE L1 498 6518 -349 375 23 0 0 chr4 79363272 79363316 -122965031 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 13527 146 56 8 chr4 79363316 79363682 -122964665 + L1PB1 LINE L1 6518 6865 -2 253 218 0 0 chr4 79363894 79363949 -122964398 + L1P LINE L1 4103 4157 -1989 356 164 0 16 chr4 79363949 79364010 -122964337 - AluJo SINE Alu -135 167 108 356 195 26 26 chr4 79364011 79364124 -122964223 + L1ME LINE L1 4151 4263 -1883 269 200 0 0 chr4 79364135 79364180 -122964167 + Alu SINE Alu 1 45 -255 1482 160 29 4 chr4 79364188 79364432 -122963915 + AluJb SINE Alu 12 261 -51 718 161 0 92 chr4 79364438 79364612 -122963735 + Tigger5 DNA MER2_type 2112 2269 -54 40917 34 21 1 chr4 79364628 79370644 -122957703 - L1PA2 LINE L1 -4 6151 13 424 181 0 0 chr4 79370664 79370736 -122957611 + Tigger5 DNA MER2_type 2252 2323 0 1369 228 77 2 chr4 79370741 79371171 -122957176 + L1ME LINE L1 4485 4946 -1200 1344 199 32 4 chr4 79371225 79371476 -122956871 - AluJb SINE Alu -46 266 9 1247 190 28 14 chr4 79371503 79372020 -122956327 + L1ME LINE L1 4992 5510 -732 2231 250 36 27 chr4 79372259 79372891 -122955456 - MER21B LTR ERV1 -204 659 22 502 78 62 8 chr4 79372944 79373072 -122955275 + (TAGA)n Simple_repeat Simple_repeat 4 138 0 519 276 0 7 chr4 79373089 79373234 -122955113 + L1ME LINE L1 5588 5731 -439 262 232 49 0 chr4 79373435 79373517 -122954830 + L1MC4 LINE L1 6618 6703 -1339 484 351 34 14 chr4 79373669 79373962 -122954385 + L1M4 LINE L1 2248 2546 -3600 426 252 28 89 chr4 79374033 79374247 -122954100 - L1ME2 LINE L1 -1 6163 5963 408 109 0 0 chr4 79374282 79374346 -122954001 - L1MA5A LINE L1 -6 6291 6228 1555 194 44 9 chr4 79374401 79374721 -122953626 - MLT1A1 LTR MaLR 0 365 35 1968 84 7 42 chr4 79374721 79375008 -122953339 - AluY SINE Alu -14 297 21 337 80 0 20 chr4 79375044 79375094 -122953253 - MLT1A1 LTR MaLR -325 49 1 1289 39 0 0 chr4 79375821 79375974 -122952373 - L1PA3 LINE L1 -3 6152 6000 445 243 7 7 chr4 79376106 79376246 -122952101 + L1M4 LINE L1 2881 3020 -3126 593 224 13 6 chr4 79376546 79376717 -122951630 - LTR47A LTR ERVL -8 444 261 1057 196 4 101 chr4 79376961 79377401 -122950946 - MER4B-int LTR ERV1 -257 4866 4629 420 198 94 0 chr4 79378056 79378162 -122950185 - L1MA4 LINE L1 -6 6294 6179 1226 164 40 0 chr4 79378162 79378363 -122949984 - AluJb SINE Alu -17 295 87 4329 166 30 16 chr4 79378369 79379903 -122948444 - L1MA4 LINE L1 -133 6167 4623 742 172 0 16 chr4 79380025 79380147 -122948200 + AluJb SINE Alu 167 286 -26 1322 174 138 40 chr4 79380188 79380464 -122947883 + AluJo SINE Alu 1 303 -9 2308 94 19 3 chr4 79380713 79381021 -122947326 + AluSq SINE Alu 1 313 0 1463 226 58 25 chr4 79381035 79381469 -122946878 + L1ME3 LINE L1 5715 6162 0 1205 86 0 0 chr4 79381486 79381638 -122946709 + AluSg/x SINE Alu 144 295 -17 684 223 135 35 chr4 79382064 79382441 -122945906 + L2 LINE L2 2776 3178 -135 950 214 178 41 chr4 79382575 79382968 -122945379 - L1MC4 LINE L1 -1135 6907 6461 1446 256 53 43 chr4 79383002 79383210 -122945137 - L1M4 LINE L1 -2445 3701 3497 2534 53 3 0 chr4 79383210 79383510 -122944837 - AluSp SINE Alu -12 301 1 2362 71 20 3 chr4 79383519 79383815 -122944532 - AluY SINE Alu -10 301 1 1446 256 53 43 chr4 79383815 79383968 -122944379 - L1M4 LINE L1 -2656 3490 3340 2239 125 0 0 chr4 79383968 79384271 -122944076 - AluSx SINE Alu -9 303 1 1446 256 53 43 chr4 79384271 79384563 -122943784 - L1M4 LINE L1 -2806 3340 3026 189 0 0 0 chr4 79384563 79384584 -122943763 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1446 256 53 43 chr4 79384584 79384668 -122943679 - L1M4 LINE L1 -3120 3026 2944 262 199 140 93 chr4 79384692 79384835 -122943512 - L1MC4a LINE L1 -1233 6582 6435 1137 86 6 31 chr4 79384913 79385075 -122943272 + AluY SINE Alu 1 158 -153 5073 58 1 0 chr4 79385175 79386086 -122942261 - L1PA8 LINE L1 -265 5907 4996 4075 107 13 36 chr4 79386081 79386784 -122941563 + L1PA8 LINE L1 4335 5021 -1125 * 690 270 74 0 chr4 79386803 79386992 -122941355 - MIR SINE MIR -45 217 15 599 241 30 0 chr4 79387091 79387257 -122941090 - L1MC5 LINE L1 -62 7899 7729 4024 144 31 39 chr4 79387281 79388093 -122940254 - L1MB7 LINE L1 0 6184 5380 578 240 85 55 chr4 79388356 79388556 -122939791 + L2 LINE L2 3107 3312 -1 260 275 53 0 chr4 79388747 79388878 -122939469 + L1ME4a LINE L1 5783 5920 -201 1075 229 57 39 chr4 79389101 79389560 -122938787 + L1MDa LINE L1 1734 2200 -4340 368 241 191 5 chr4 79390089 79390309 -122938038 + L1MDa LINE L1 2344 2604 -4117 1456 236 43 94 chr4 79390347 79390899 -122937448 + MLT1E2 LTR MaLR 59 583 -42 544 129 10 50 chr4 79390899 79391000 -122937347 - Tigger7 DNA MER2_type -1 2486 2390 1321 211 23 0 chr4 79391003 79391259 -122937088 - Tigger7 DNA MER2_type -2223 264 3 1324 206 35 96 chr4 79391284 79391619 -122936728 + L1MDa LINE L1 2547 2901 -3639 1374 177 22 73 chr4 79391619 79391936 -122936411 + AluJo SINE Alu 1 301 -11 1324 206 35 96 chr4 79391936 79391963 -122936384 + L1MDa LINE L1 2901 2928 -3612 788 161 0 0 chr4 79391963 79392087 -122936260 + FLAM_C SINE Alu 1 124 -9 1324 206 35 96 chr4 79392087 79392360 -122935987 + L1MDa LINE L1 2928 3144 -3396 3813 142 78 81 chr4 79392484 79392883 -122935464 - LTR49-int LTR ERV1 -743 5203 4804 7567 31 0 0 chr4 79392883 79393919 -122934428 - L1PA3 LINE L1 0 6155 5119 3813 142 78 81 chr4 79393919 79394114 -122934233 - LTR49-int LTR ERV1 -1142 4804 4610 185 0 40 0 chr4 79394114 79394139 -122934208 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1805 175 0 0 chr4 79394141 79394433 -122933914 - AluSq SINE Alu -21 292 1 3813 142 78 81 chr4 79394433 79394940 -122933407 - LTR49-int LTR ERV1 -1337 4609 4092 353 283 196 6 chr4 79394940 79395163 -122933184 - L2 LINE L2 -267 3046 2794 297 272 22 88 chr4 79395606 79395703 -122932644 + L2 LINE L2 2549 2636 -678 2031 125 3 3 chr4 79395703 79396018 -122932329 - AluSx SINE Alu 0 312 1 297 272 22 88 chr4 79396018 79396056 -122932291 + L2 LINE L2 2636 2675 -639 227 226 0 19 chr4 79396071 79396124 -122932223 + MER21B LTR ERV1 13 64 -799 375 229 0 0 chr4 79396159 79396229 -122932118 + MER21B LTR ERV1 20 89 -774 * 448 268 41 0 chr4 79396228 79396351 -122931996 + MER21B LTR ERV1 45 172 -691 2006 181 85 25 chr4 79396362 79396799 -122931548 + MER21B LTR ERV1 289 751 -112 920 291 82 34 chr4 79396875 79397471 -122930876 + L2 LINE L2 2686 3313 0 372 200 0 0 chr4 79397695 79397780 -122930567 + GA-rich Low_complexity Low_complexity 3 87 0 1809 155 54 35 chr4 79397969 79398337 -122930010 + THE1C LTR MaLR 1 375 0 221 56 0 28 chr4 79399029 79399065 -122929282 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1364 143 0 0 chr4 79399363 79399580 -122928767 - L1PA8 LINE L1 -14 6158 5942 2050 116 46 0 chr4 79399736 79400020 -122928327 - AluSx SINE Alu -15 297 1 401 263 40 0 chr4 79400084 79400183 -122928164 + MER69 DNA AcHobo 1 103 -1123 2444 70 0 7 chr4 79400320 79400619 -122927728 - AluSp SINE Alu -16 297 1 22 0 0 0 chr4 79402869 79402891 -122925456 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 79404165 79404190 -122924157 + AT_rich Low_complexity Low_complexity 1 25 0 904 142 0 0 chr4 79404190 79404317 -122924030 - FLAM_C SINE Alu -16 127 1 281 312 92 9 chr4 79404590 79404699 -122923648 - MIR SINE MIR -86 176 59 318 213 25 12 chr4 79404864 79404944 -122923403 - MLT1K LTR MaLR -340 248 168 336 238 25 0 chr4 79405157 79405237 -122923110 - L1ME LINE L1 -517 5604 5523 21 0 0 0 chr4 79405350 79405371 -122922976 + AT_rich Low_complexity Low_complexity 1 21 0 2442 93 0 0 chr4 79405591 79405903 -122922444 - AluSx SINE Alu 0 312 1 1722 129 39 95 chr4 79408092 79408200 -122920147 + MLT1B LTR MaLR 1 113 -277 2090 73 8 4 chr4 79408200 79408461 -122919886 - AluY SINE Alu -13 298 37 1722 129 39 95 chr4 79408461 79408650 -122919697 + MLT1B LTR MaLR 113 271 -119 2224 172 35 43 chr4 79408650 79409138 -122919209 + MER66B LTR ERV1 3 486 0 1722 129 39 95 chr4 79409138 79409250 -122919097 + MLT1B LTR MaLR 271 388 -2 1432 208 107 53 chr4 79409265 79409398 -122918949 - L1MD3 LINE L1 0 8034 7910 258 116 0 0 chr4 79409398 79409441 -122918906 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 1432 208 107 53 chr4 79409441 79409863 -122918484 - L1MD3 LINE L1 -124 7910 7466 2243 103 0 3 chr4 79411398 79411690 -122916657 + AluSq SINE Alu 1 291 -22 21 0 0 0 chr4 79411690 79411711 -122916636 + AT_rich Low_complexity Low_complexity 1 21 0 1761 193 44 24 chr4 79412748 79413203 -122915144 + L1ME3 LINE L1 5618 6081 -81 215 278 9 0 chr4 79413206 79413321 -122915026 + (TA)n Simple_repeat Simple_repeat 1 116 0 2599 48 0 6 chr4 79413370 79413683 -122914664 + AluY SINE Alu 1 311 0 471 47 31 0 chr4 79414077 79414141 -122914206 + AluS SINE Alu 22 87 -225 308 191 24 48 chr4 79414279 79414363 -122913984 + L1ME4a LINE L1 6040 6121 0 1427 217 139 41 chr4 79414509 79414940 -122913407 + L1MC5 LINE L1 7095 7482 -479 807 141 259 23 chr4 79414940 79415202 -122913145 + MER33 DNA MER1_type 1 324 0 1427 217 139 41 chr4 79415202 79415527 -122912820 + L1MC5 LINE L1 7482 7925 -36 1096 290 131 11 chr4 79415796 79416316 -122912031 - MLT1G1 LTR MaLR -13 582 1 2877 13 0 0 chr4 79416939 79417255 -122911092 - AluYb8 SINE Alu -2 316 1 589 235 17 0 chr4 79417512 79417631 -122910716 - MIR SINE MIR -140 122 2 437 250 107 51 chr4 79418469 79418712 -122909635 - MIR SINE MIR -8 254 3 407 216 35 26 chr4 79419086 79419202 -122909145 + MIR3 SINE MIR 91 207 -1 1675 130 55 33 chr4 79421758 79422120 -122906227 - L1 LINE L1 -2430 3716 3347 2166 98 25 0 chr4 79422174 79422459 -122905888 + AluSq SINE Alu 1 292 -21 1101 213 63 33 chr4 79422987 79423321 -122905026 - MER2 DNA MER2_type 0 344 1 1617 162 56 5 chr4 79423338 79423714 -122904633 + L1 LINE L1 3203 3597 -2549 629 25 0 0 chr4 79423815 79423894 -122904453 - AluY SINE Alu -232 79 1 4011 137 20 10 chr4 79423905 79424599 -122903748 - Tigger3b DNA MER2_type -530 701 1 180 357 8 48 chr4 79424616 79424742 -122903605 + MIR SINE MIR 20 140 -122 1941 109 3 84 chr4 79425193 79425515 -122902832 + AluSx SINE Alu 1 296 -16 254 235 0 15 chr4 79425682 79425750 -122902597 + L1MC/D LINE L1 5741 5807 -2001 373 210 176 34 chr4 79425947 79426066 -122902281 + L2 LINE L2 3175 3310 -3 265 337 0 22 chr4 79426090 79426182 -122902165 - L3 LINE CR1 -1258 319 230 210 397 44 0 chr4 79426237 79426305 -122902042 + L2 LINE L2 3125 3195 -77 207 0 0 0 chr4 79426305 79426328 -122902019 + (T)n Simple_repeat Simple_repeat 1 23 0 2838 89 14 14 chr4 79426513 79426938 -122901409 + L1PB2 LINE L1 5727 6151 0 424 299 67 6 chr4 79426959 79427123 -122901224 - MIR SINE MIR -75 187 14 445 288 127 44 chr4 79428055 79428284 -122900063 + MIR SINE MIR 14 261 -1 202 267 33 0 chr4 79428554 79428614 -122899733 + GA-rich Low_complexity Low_complexity 4 65 0 2329 92 3 0 chr4 79429136 79429429 -122898918 + AluSp SINE Alu 1 294 -19 2067 120 0 7 chr4 79430459 79430774 -122897573 - AluSx SINE Alu 0 313 1 23 0 0 0 chr4 79430774 79430797 -122897550 + AT_rich Low_complexity Low_complexity 1 23 0 452 231 25 25 chr4 79430877 79430998 -122897349 - L2 LINE L2 -3 3310 3190 897 282 48 12 chr4 79431097 79431349 -122896998 - MIR SINE MIR 0 262 2 2472 39 3 23 chr4 79432715 79433023 -122895324 + AluY SINE Alu 1 302 -9 2083 119 0 3 chr4 79433342 79433636 -122894711 + AluSx SINE Alu 1 293 -19 2478 50 0 0 chr4 79434115 79434397 -122893950 - AluSp SINE Alu -10 303 22 2100 128 0 6 chr4 79434791 79435104 -122893243 - AluY SINE Alu 0 311 1 1189 114 75 7 chr4 79435280 79435610 -122892737 - MSTA LTR MaLR -50 378 4 4579 152 61 14 chr4 79435613 79435666 -122892681 + L1MA7 LINE L1 4543 4592 -1699 2476 155 25 0 chr4 79435666 79436067 -122892280 + LTR57 LTR ERVL 1 411 0 4579 152 61 14 chr4 79436067 79437683 -122890664 + L1MA7 LINE L1 4592 6284 -7 236 222 0 16 chr4 79438304 79438367 -122889980 + L1ME4a LINE L1 5991 6052 -69 305 326 131 17 chr4 79438822 79438997 -122889350 + MIR SINE MIR 8 202 -60 1573 171 66 7 chr4 79439137 79439411 -122888936 + AluJo SINE Alu 1 290 -22 567 224 16 16 chr4 79440068 79440193 -122888154 + L2 LINE L2 3189 3313 0 23 54 0 0 chr4 79441775 79441812 -122886535 + AT_rich Low_complexity Low_complexity 1 37 0 1009 165 53 10 chr4 79441823 79442029 -122886318 + L1MB8 LINE L1 5959 6173 -5 491 178 59 0 chr4 79442454 79442555 -122885792 + MER57A LTR ERV1 297 403 0 2282 212 46 39 chr4 79442557 79443123 -122885224 + MER57A-int LTR ERV1 3 572 -6965 353 135 29 135 chr4 79443162 79443266 -122885081 + MER57A-int LTR ERV1 578 670 -6867 921 102 43 54 chr4 79443297 79443483 -122884864 + MER57A-int LTR ERV1 649 832 -6705 311 136 0 17 chr4 79443804 79443863 -122884484 + MER34C LTR ERV1 155 212 -373 445 174 29 16 chr4 79444017 79444154 -122884193 + MER57A-int LTR ERV1 1096 1180 -3691 266 247 0 45 chr4 79444171 79444260 -122884087 + MER57-int LTR ERV1 3413 3497 -4040 390 168 109 20 chr4 79444325 79444426 -122883921 + MER57-int LTR ERV1 3231 3340 -2991 481 256 17 0 chr4 79444475 79444592 -122883755 + MER57-int LTR ERV1 3346 3464 -2867 830 200 53 18 chr4 79444746 79445119 -122883228 + MER57-int LTR ERV1 1759 2206 -2917 1907 113 0 0 chr4 79445154 79445402 -122882945 + AluSg SINE Alu 42 289 -21 1105 183 79 60 chr4 79445487 79445853 -122882494 + MER57-int LTR ERV1 3703 4075 -2256 477 148 48 0 chr4 79445853 79446065 -122882282 + (TA)n Simple_repeat Simple_repeat 1 222 0 303 250 0 52 chr4 79446069 79446165 -122882182 - L1MC4 LINE L1 -1338 6704 6614 530 141 45 0 chr4 79446172 79446328 -122882019 + (TA)n Simple_repeat Simple_repeat 2 164 0 5927 145 42 22 chr4 79446331 79447206 -122881141 + MER57-int LTR ERV1 2720 3577 -3960 2216 92 7 10 chr4 79447206 79447509 -122880838 + AluSq SINE Alu 1 302 -11 5927 145 42 22 chr4 79447509 79447793 -122880554 + MER57-int LTR ERV1 3577 5820 -1717 2131 164 31 10 chr4 79448127 79448541 -122879806 + MER57-int LTR ERV1 5825 6247 -1290 24 32 0 0 chr4 79448691 79448722 -122879625 + AT_rich Low_complexity Low_complexity 1 31 0 212 353 60 15 chr4 79449341 79449474 -122878873 - L3b LINE CR1 -217 1366 1228 27 0 0 0 chr4 79450463 79450490 -122877857 + AT_rich Low_complexity Low_complexity 1 27 0 222 246 53 0 chr4 79450641 79450698 -122877649 - MIR SINE MIR -61 147 88 693 268 74 13 chr4 79450795 79451026 -122877321 - MIR SINE MIR 0 262 18 184 358 11 11 chr4 79451030 79451125 -122877222 - L2 LINE L2 -798 2516 2422 260 330 104 17 chr4 79451269 79451390 -122876957 + MIR SINE MIR 38 167 -64 21 57 0 0 chr4 79452539 79452574 -122875773 + AT_rich Low_complexity Low_complexity 1 35 0 988 261 148 16 chr4 79452922 79453481 -122874866 - L1MC4 LINE L1 -1878 5930 5298 307 258 61 18 chr4 79453675 79453838 -122874509 - L1MC4 LINE L1 -1005 5141 4972 327 222 77 86 chr4 79453846 79453963 -122874384 + MLT1J LTR MaLR 9 124 -387 296 274 216 7 chr4 79454105 79454258 -122874089 + MLT1J LTR MaLR 327 511 0 358 299 49 5 chr4 79454391 79454575 -122873772 - L1MC4 LINE L1 -1342 4804 4613 2659 245 69 11 chr4 79454589 79455704 -122872643 + L1MEc LINE L1 206 1411 -5152 1887 162 30 22 chr4 79455705 79456075 -122872272 + MER57A LTR ERV1 8 380 -23 290 67 0 0 chr4 79456095 79456140 -122872207 + MER57A LTR ERV1 359 403 0 419 254 62 54 chr4 79456148 79456429 -122871918 + L1MEc LINE L1 1263 1643 -4739 1176 180 130 11 chr4 79456449 79456826 -122871521 + L1MEc LINE L1 3336 3757 -2625 1614 104 66 83 chr4 79456943 79457232 -122871115 - AluJb SINE Alu -28 284 1 658 253 92 4 chr4 79457241 79457502 -122870845 + L1M4 LINE L1 2246 2529 -3617 1909 150 175 39 chr4 79457617 79457675 -122870672 + MLT1D LTR MaLR 12 61 -444 2067 133 11 48 chr4 79457675 79458051 -122870296 + THE1B LTR MaLR 1 362 -2 1909 150 175 39 chr4 79458051 79458426 -122869921 + MLT1D LTR MaLR 61 504 -1 324 254 85 59 chr4 79459378 79459496 -122868851 - L2 LINE L2 -3 3310 3190 262 264 148 32 chr4 79460015 79460201 -122868146 + MIR SINE MIR 15 218 -44 320 266 9 18 chr4 79461594 79461703 -122866644 + L1ME LINE L1 5706 5813 -357 192 77 0 0 chr4 79461840 79461866 -122866481 + (TG)n Simple_repeat Simple_repeat 2 27 0 248 319 21 0 chr4 79461951 79462037 -122866310 + GA-rich Low_complexity Low_complexity 2 150 0 2143 110 10 3 chr4 79462075 79462376 -122865971 + AluSx SINE Alu 1 303 -9 821 212 22 16 chr4 79462859 79463043 -122865304 - MIR SINE MIR -3 259 75 222 91 0 0 chr4 79463116 79463149 -122865198 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 317 208 111 0 chr4 79463755 79463827 -122864520 - MLT1K LTR MaLR -109 479 400 433 294 173 26 chr4 79463919 79464150 -122864197 - MLT1K LTR MaLR -315 273 9 832 200 93 0 chr4 79464493 79464698 -122863649 - L1MC5 LINE L1 -36 7925 7702 523 116 0 23 chr4 79464698 79464784 -122863563 - AluS SINE Alu -3 309 226 1820 132 0 32 chr4 79464784 79465064 -122863283 - AluSx SINE Alu -41 271 1 389 162 0 0 chr4 79465138 79465212 -122863135 - L1MC5 LINE L1 -412 7549 7476 1019 224 69 17 chr4 79465329 79465561 -122862786 + MIR SINE MIR 7 250 -12 240 284 54 0 chr4 79465554 79465628 -122862719 - MIR SINE MIR -71 137 60 * 2026 197 7 19 chr4 79466961 79467373 -122860974 - MLT2D LTR ERVL -7 407 1 460 62 0 0 chr4 79467648 79467713 -122860634 + L1MB3 LINE L1 6117 6181 -2 3128 155 28 38 chr4 79467805 79468412 -122859935 - MER6A DNA MER2_type -3 602 2 1614 126 112 25 chr4 79468661 79468939 -122859408 - AluJb SINE Alu -10 302 1 32 0 0 0 chr4 79469039 79469071 -122859276 + AT_rich Low_complexity Low_complexity 1 32 0 2182 110 0 20 chr4 79469074 79469375 -122858972 + AluSx SINE Alu 3 297 -15 1402 256 112 36 chr4 79469424 79469975 -122858372 + L2 LINE L2 2418 3069 -244 1893 154 7 23 chr4 79469975 79470281 -122858066 - AluJb SINE Alu -7 305 5 1402 256 112 36 chr4 79470281 79470541 -122857806 + L2 LINE L2 3069 3308 -5 255 257 46 37 chr4 79471164 79471273 -122857074 + MLT1K LTR MaLR 218 327 -261 231 125 0 0 chr4 79471311 79471351 -122856996 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 2537 132 55 11 chr4 79471369 79471802 -122856545 - Tigger3(Golem) DNA MER2_type -1 3028 2577 2147 89 25 0 chr4 79472355 79472637 -122855710 + AluSp SINE Alu 7 295 -18 2122 146 134 34 chr4 79472732 79472811 -122855536 + Looper DNA T2_type 47 117 -1441 2410 80 0 0 chr4 79472811 79473112 -122855235 + AluY SINE Alu 1 301 -10 2122 146 134 34 chr4 79473112 79473599 -122854748 + Looper DNA T2_type 117 670 -888 1038 215 9 36 chr4 79473604 79473823 -122854524 - MER20 DNA MER1_type -6 213 1 * 3009 169 70 113 chr4 79473823 79473968 -122854379 + Looper DNA T2_type 662 812 -746 2212 101 10 19 chr4 79473968 79474276 -122854071 + AluSg SINE Alu 1 305 -5 3009 169 70 113 chr4 79474276 79474816 -122853531 + Looper DNA T2_type 812 1299 -259 2269 149 50 28 chr4 79474816 79475238 -122853109 + Tigger2a DNA MER2_type 1 431 -3 3009 169 70 113 chr4 79475238 79475488 -122852859 + Looper DNA T2_type 1299 1558 0 2086 154 12 6 chr4 79475559 79475891 -122852456 - MER1B DNA MER1_type 0 337 4 239 258 0 0 chr4 79476642 79476704 -122851643 + A-rich Low_complexity Low_complexity 1 62 0 246 277 9 36 chr4 79476885 79476997 -122851350 + L1M4 LINE L1 1099 1207 -5335 768 271 98 21 chr4 79477063 79478386 -122849961 + L1M4 LINE L1 1479 2990 -3654 * 781 254 115 4 chr4 79478378 79478630 -122849717 + L1ME3A LINE L1 5883 6162 -8 453 231 46 30 chr4 79479163 79479318 -122849029 + L1ME1 LINE L1 6018 6177 -1 2747 79 3 3 chr4 79480135 79480490 -122847857 + THE1A LTR MaLR 1 355 0 253 135 58 19 chr4 79480682 79480734 -122847613 + MLT1J1 LTR MaLR 4 57 -389 262 253 79 56 chr4 79480740 79480944 -122847403 + MLT1J1 LTR MaLR 289 434 -12 284 216 135 0 chr4 79481102 79481176 -122847171 + L2 LINE L2 725 808 -2506 4448 180 155 31 chr4 79481177 79482482 -122845865 - Charlie1 DNA MER1_type 0 2761 1 217 267 67 0 chr4 79482488 79482563 -122845784 + L2 LINE L2 822 901 -2413 2212 232 142 48 chr4 79482570 79483449 -122844898 + L2 LINE L2 1063 2024 -1290 263 358 118 22 chr4 79483884 79484113 -122844234 - MIR SINE MIR -11 251 1 381 262 39 139 chr4 79485387 79485696 -122842651 - L2 LINE L2 -5 3267 2990 222 296 56 0 chr4 79486849 79486903 -122841444 - L2 LINE L2 -3 3269 3213 21 36 0 0 chr4 79487294 79487322 -122841025 + AT_rich Low_complexity Low_complexity 1 28 0 2360 87 0 0 chr4 79487571 79487870 -122840477 - AluSg1 SINE Alu -10 299 1 333 257 151 0 chr4 79488826 79488978 -122839369 - L1ME4a LINE L1 -44 6146 5972 1048 220 26 13 chr4 79489015 79489242 -122839105 - MIR SINE MIR -21 241 12 356 294 135 31 chr4 79489273 79489436 -122838911 - MER5A DNA MER1_type -2 187 8 596 264 49 6 chr4 79489470 79489633 -122838714 - L1ME3A LINE L1 -5 6165 5996 1107 224 92 69 chr4 79489656 79489882 -122838465 - L1ME3A LINE L1 -242 5928 5709 7684 23 0 0 chr4 79489882 79490837 -122837510 - L1PA2 LINE L1 0 6155 5201 1107 224 92 69 chr4 79490837 79491044 -122837303 - L1ME3A LINE L1 -461 5709 5485 440 310 105 35 chr4 79491059 79491517 -122836830 - L1ME4a LINE L1 -302 5888 5399 6363 132 16 16 chr4 79492859 79494076 -122834271 - L1MA3 LINE L1 0 6305 5087 2019 129 19 10 chr4 79494076 79494385 -122833962 + AluJb SINE Alu 1 312 0 6363 132 16 16 chr4 79494385 79494691 -122833656 - L1MA3 LINE L1 -1218 5087 4782 2989 258 75 40 chr4 79494699 79495297 -122833050 - L1ME4a LINE L1 -4350 2046 1471 1822 147 10 16 chr4 79495297 79495603 -122832744 - AluJb SINE Alu -2 310 7 2989 258 75 40 chr4 79495603 79496330 -122832017 - L1ME4a LINE L1 -4925 1471 674 1727 252 66 6 chr4 79496361 79496876 -122831471 - L1ME4a LINE L1 -5819 577 32 21 0 0 0 chr4 79496880 79496901 -122831446 + AT_rich Low_complexity Low_complexity 1 21 0 2201 101 7 14 chr4 79499323 79499619 -122828728 + AluSx SINE Alu 1 294 -18 29 47 0 0 chr4 79500471 79500514 -122827833 + AT_rich Low_complexity Low_complexity 1 43 0 2584 268 53 26 chr4 79500691 79501521 -122826826 - HERV16 LTR ERVL -1902 3094 2307 2725 175 62 22 chr4 79501564 79502101 -122826246 + MER68 LTR ERV1 5 562 0 2188 115 18 87 chr4 79502141 79502532 -122825815 - THE1B LTR MaLR 0 364 1 12199 83 8 0 chr4 79502532 79504100 -122824247 - THE1B-int LTR MaLR 0 1580 1 1284 109 10 26 chr4 79504100 79504292 -122824055 - THE1B LTR MaLR 0 364 176 3911 35 2 0 chr4 79504320 79504777 -122823570 - L1PA5 LINE L1 -4 6150 5693 4764 37 17 2 chr4 79504777 79505661 -122822686 + L1PA5 LINE L1 4802 5696 -458 1023 136 73 28 chr4 79505661 79505838 -122822509 - THE1B LTR MaLR -179 185 1 708 238 76 0 chr4 79505846 79506018 -122822329 - LTR16A LTR ERVL -239 211 27 1902 102 4 0 chr4 79556537 79556783 -122771564 - AluSx SINE Alu -65 247 1 1344 156 13 9 chr4 79556789 79557014 -122771333 - AluJo SINE Alu -2 310 85 2528 57 0 3 chr4 79557022 79557320 -122771027 - AluY SINE Alu -14 297 1 301 196 20 0 chr4 79558066 79558117 -122770230 - MER68 LTR ERV1 0 562 511 658 260 108 28 chr4 79558122 79558522 -122769825 - L1MEd LINE L1 -2993 3136 2705 484 302 16 12 chr4 79558571 79558829 -122769518 - L1MEd LINE L1 -3518 2611 2353 2010 122 3 34 chr4 79558840 79559136 -122769211 - AluSc SINE Alu -22 287 1 1933 164 3 0 chr4 79559142 79559435 -122768912 - AluJo SINE Alu -18 294 1 460 264 67 67 chr4 79559436 79559554 -122768793 - L1MEc LINE L1 -1071 5144 5028 2311 100 10 0 chr4 79559554 79559853 -122768494 - AluSq SINE Alu -11 302 1 460 264 67 67 chr4 79559853 79560417 -122767930 - L1MEc LINE L1 -1187 5028 4466 1740 184 0 10 chr4 79560417 79560711 -122767636 - AluJb SINE Alu -21 291 1 460 264 67 67 chr4 79560711 79560765 -122767582 - L1MEc LINE L1 -1749 4466 2054 354 313 8 23 chr4 79560906 79561034 -122767313 - FLAM_C SINE Alu -7 126 1 2269 108 10 0 chr4 79561290 79561595 -122766752 - AluSg SINE Alu -2 308 1 687 237 72 7 chr4 79561595 79561880 -122766467 - L1MEd LINE L1 -3781 2348 2096 743 283 56 46 chr4 79562149 79562334 -122766013 - L1MEd LINE L1 -4598 1712 1530 1178 177 0 0 chr4 79562334 79562509 -122765838 + FAM SINE Alu 1 175 0 743 283 56 46 chr4 79562509 79562798 -122765549 - L1MEd LINE L1 -4780 1530 1230 2164 128 0 3 chr4 79562798 79563095 -122765252 + AluSx SINE Alu 2 297 -15 743 283 56 46 chr4 79563095 79563139 -122765208 - L1MEd LINE L1 -5080 1230 1188 264 255 27 18 chr4 79563442 79563554 -122764793 - L1MEd LINE L1 -5953 166 4 315 324 46 70 chr4 79563667 79563812 -122764535 - L1MEc LINE L1 -5303 902 763 1649 187 0 31 chr4 79563812 79564131 -122764216 - AluJb SINE Alu 0 310 1 315 324 46 70 chr4 79564131 79564225 -122764122 - L1MEc LINE L1 -5442 763 668 816 175 21 102 chr4 79564225 79564463 -122763884 + LTR41 LTR ERVL 1 243 -552 298 245 97 65 chr4 79564723 79564878 -122763469 + LTR41 LTR ERVL 591 750 -23 326 338 72 43 chr4 79564925 79565132 -122763215 - L1MEd LINE L1 -5377 742 530 2433 83 3 10 chr4 79565480 79565794 -122762553 + AluSp SINE Alu 1 312 -1 2355 62 0 3 chr4 79566113 79566404 -122761943 + AluY SINE Alu 1 290 -21 241 214 62 45 chr4 79566633 79566745 -122761602 + L1ME4a LINE L1 6008 6121 0 303 132 162 0 chr4 79566959 79567027 -122761320 + L1ME2 LINE L1 6076 6154 -10 2346 103 0 3 chr4 79567044 79567356 -122760991 + AluSx SINE Alu 1 311 -1 242 239 0 15 chr4 79567382 79567449 -122760898 + L1MC4 LINE L1 7822 7887 -155 367 90 0 30 chr4 79568175 79568242 -122760105 + (TA)n Simple_repeat Simple_repeat 1 65 0 277 194 29 87 chr4 79568711 79568814 -122759533 + HAL1b LINE L1 445 541 -807 402 194 37 28 chr4 79568841 79568949 -122759398 + HAL1b LINE L1 697 805 -543 1617 188 10 32 chr4 79568983 79569292 -122759055 + AluJo SINE Alu 3 304 -8 888 208 12 24 chr4 79569428 79569596 -122758751 + FRAM SINE Alu 1 166 0 24 0 0 0 chr4 79569617 79569641 -122758706 + AT_rich Low_complexity Low_complexity 1 24 0 1857 107 3 110 chr4 79569651 79569988 -122758359 + AluSp SINE Alu 1 301 -12 1799 85 40 0 chr4 79570028 79570276 -122758071 + L1PA12 LINE L1 5786 6043 -125 636 36 71 0 chr4 79570396 79570480 -122757867 + L1PA12 LINE L1 6079 6168 0 252 0 0 0 chr4 79570637 79570665 -122757682 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1978 115 7 0 chr4 79570666 79570944 -122757403 - AluSx SINE Alu -32 280 1 1329 82 113 0 chr4 79571095 79571290 -122757057 - AluSg/x SINE Alu 0 310 94 248 96 39 0 chr4 79571352 79571404 -122756943 + (TTAAA)n Simple_repeat Simple_repeat 3 56 0 2562 47 0 0 chr4 79571491 79571788 -122756559 - AluY SINE Alu -14 297 1 25 0 0 0 chr4 79572210 79572235 -122756112 + AT_rich Low_complexity Low_complexity 1 25 0 2587 58 6 0 chr4 79573031 79573342 -122755005 + AluSp SINE Alu 1 313 0 1412 113 0 0 chr4 79575415 79575600 -122752747 + AluSq SINE Alu 1 185 -128 2317 99 0 7 chr4 79575759 79576061 -122752286 - AluSg SINE Alu -10 300 1 966 204 0 0 chr4 79576278 79576445 -122751902 + AluJb SINE Alu 135 301 -11 2234 126 0 0 chr4 79576692 79576994 -122751353 + AluSx SINE Alu 1 302 -10 1738 203 0 3 chr4 79577573 79577868 -122750479 + AluJo SINE Alu 1 294 -18 33 25 0 0 chr4 79579665 79579705 -122748642 + AT_rich Low_complexity Low_complexity 1 40 0 201 39 0 0 chr4 79580223 79580249 -122748098 + (CA)n Simple_repeat Simple_repeat 1 26 0 23 33 0 0 chr4 79580432 79580462 -122747885 + AT_rich Low_complexity Low_complexity 1 30 0 2322 98 0 0 chr4 79580524 79580821 -122747526 + AluSx SINE Alu 1 297 -15 1013 248 107 32 chr4 79580854 79581387 -122746960 - L2 LINE L2 -73 3240 2669 26 0 0 0 chr4 79581519 79581545 -122746802 + AT_rich Low_complexity Low_complexity 1 26 0 1155 186 0 55 chr4 79581551 79581787 -122746560 - AluJo SINE Alu -3 309 87 610 139 10 0 chr4 79581895 79581996 -122746351 + L1MC4 LINE L1 6911 7012 -1030 * 1961 153 41 46 chr4 79581995 79582295 -122746052 + L1ME LINE L1 5286 5585 -581 2871 7 0 0 chr4 79582295 79582602 -122745745 - AluYa5 SINE Alu -4 307 1 1961 153 41 46 chr4 79582602 79582694 -122745653 + L1ME LINE L1 5585 5676 -490 2073 146 0 3 chr4 79584769 79585077 -122743270 - AluSx SINE Alu -5 307 1 263 119 0 0 chr4 79585973 79586015 -122742332 - MADE1 DNA Mariner -37 43 2 2410 65 14 0 chr4 79587234 79587525 -122740822 + AluSp SINE Alu 1 295 -18 1526 216 0 10 chr4 79587532 79587837 -122740510 - AluJb SINE Alu -10 302 1 21 0 0 0 chr4 79587840 79587861 -122740486 + AT_rich Low_complexity Low_complexity 1 21 0 2123 93 19 22 chr4 79587896 79588207 -122740140 - AluSg SINE Alu 0 310 1 2897 178 36 81 chr4 79588321 79588588 -122739759 - MER82 DNA MER2_type 0 653 376 2284 93 13 19 chr4 79588588 79588898 -122739449 - AluSx SINE Alu -4 308 1 2897 178 36 81 chr4 79588898 79589107 -122739240 - MER82 DNA MER2_type -277 376 159 802 194 0 0 chr4 79589107 79589231 -122739116 + FLAM_C SINE Alu 1 124 -9 2897 178 36 81 chr4 79589231 79589350 -122738997 - MER82 DNA MER2_type -494 159 88 1721 195 3 0 chr4 79589350 79589642 -122738705 - AluJo SINE Alu -19 293 1 2897 178 36 81 chr4 79589642 79589713 -122738634 - MER82 DNA MER2_type -565 88 15 6632 127 82 11 chr4 79590050 79590657 -122737690 - Tigger3b DNA MER2_type -1806 1222 659 2171 96 41 0 chr4 79590657 79590950 -122737397 - AluSx SINE Alu -7 305 1 6632 127 82 11 chr4 79590950 79591480 -122736867 - Tigger3b DNA MER2_type -2369 659 5 2448 70 0 3 chr4 79592041 79592340 -122736007 - AluY SINE Alu -13 298 1 238 222 102 46 chr4 79592572 79592680 -122735667 + L2 LINE L2 3160 3273 -40 834 155 108 52 chr4 79592698 79592842 -122735505 - MER5C DNA MER1_type 0 324 159 2436 66 0 0 chr4 79592842 79593131 -122735216 - AluY SINE Alu -22 289 1 834 155 108 52 chr4 79593131 79593237 -122735110 - MER5C DNA MER1_type -165 159 60 2161 112 0 0 chr4 79593489 79593775 -122734572 - AluSx SINE Alu -26 286 1 2305 125 0 0 chr4 79594673 79594985 -122733362 + AluSx SINE Alu 1 312 0 649 276 85 60 chr4 79594990 79595472 -122732875 - MLT1J LTR MaLR -2 509 16 253 235 20 69 chr4 79596028 79596130 -122732217 - MIR SINE MIR 0 262 166 1526 197 25 18 chr4 79596345 79596629 -122731718 - AluJo SINE Alu -26 286 1 2120 85 54 20 chr4 79596658 79596953 -122731394 - AluY SINE Alu -6 305 1 2392 86 13 0 chr4 79596953 79597256 -122731091 - AluSp SINE Alu -6 307 1 1555 174 4 4 chr4 79597283 79597541 -122730806 - AluSx SINE Alu -54 258 1 258 105 0 0 chr4 79598005 79598043 -122730304 + (TA)n Simple_repeat Simple_repeat 2 39 0 1503 146 12 25 chr4 79598448 79598688 -122729659 - AluJo SINE Alu -12 300 64 2351 91 0 13 chr4 79598801 79599109 -122729238 - AluSx SINE Alu -8 304 1 481 156 119 37 chr4 79599117 79599208 -122729139 - L1M4 LINE L1 -892 5254 5151 1721 169 7 20 chr4 79599208 79599503 -122728844 + AluJb SINE Alu 1 291 -21 481 156 119 37 chr4 79599503 79599520 -122728827 - L1M4 LINE L1 -995 5151 5137 1170 127 0 17 chr4 79599528 79599709 -122728638 - AluSc SINE Alu 0 309 132 2066 131 6 3 chr4 79600102 79600414 -122727933 + AluSp SINE Alu 1 313 0 1414 113 0 0 chr4 79602487 79602672 -122725675 + AluSq SINE Alu 1 185 -128 2161 112 0 7 chr4 79602831 79603135 -122725212 - AluSx SINE Alu -10 302 1 2517 150 95 4 chr4 79604189 79604695 -122723652 + L1MB7 LINE L1 5613 6164 -20 405 326 130 0 chr4 79605402 79605586 -122722761 + L2 LINE L2 1712 1919 -1395 758 270 66 52 chr4 79605592 79606014 -122722333 + MLT1J1 LTR MaLR 1 428 -18 1461 263 120 13 chr4 79606033 79606635 -122721712 + L2 LINE L2 1944 2609 -705 228 351 114 20 chr4 79606697 79606901 -122721446 + L2 LINE L2 2796 3019 -294 338 288 136 0 chr4 79606965 79607083 -122721264 + MIR SINE MIR 61 194 -68 253 274 162 43 chr4 79607120 79607237 -122721110 + L2 LINE L2 3173 3303 -10 1672 175 21 4 chr4 79607785 79608065 -122720282 - AluJb SINE Alu -27 285 1 247 301 252 18 chr4 79608218 79608504 -122719843 + L2 LINE L2 2606 2958 -356 228 344 16 0 chr4 79608664 79608728 -122719619 + L2 LINE L2 3232 3296 -17 2228 71 3 3 chr4 79608734 79609049 -122719298 + AluSp SINE Alu 1 315 0 1966 128 0 14 chr4 79609903 79610199 -122718148 - AluSx SINE Alu -20 292 1 2148 92 10 14 chr4 79610596 79610914 -122717433 + AluSq SINE Alu 1 313 0 249 191 348 0 chr4 79610923 79611012 -122717335 - MIR SINE MIR -36 226 107 2303 94 3 0 chr4 79611229 79611528 -122716819 + AluSp SINE Alu 1 300 -13 2310 72 7 26 chr4 79611612 79611919 -122716428 + AluSc SINE Alu 1 301 -8 189 0 0 0 chr4 79613742 79613763 -122714584 + (TA)n Simple_repeat Simple_repeat 2 22 0 1584 163 21 21 chr4 79616273 79616555 -122711792 - AluJo SINE Alu -30 282 1 22 0 0 0 chr4 79617427 79617449 -122710898 + AT_rich Low_complexity Low_complexity 1 22 0 2305 104 3 3 chr4 79618514 79618823 -122709524 + AluSc SINE Alu 1 309 0 2048 88 0 4 chr4 79620197 79620459 -122707888 + AluSq SINE Alu 24 284 -29 186 43 0 0 chr4 79620462 79620485 -122707862 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2255 75 31 0 chr4 79620599 79620892 -122707455 + AluSp SINE Alu 1 302 -11 1025 130 0 20 chr4 79621152 79621298 -122707049 - FRAM SINE Alu -18 158 16 2048 105 3 40 chr4 79622787 79623091 -122705256 + AluSx SINE Alu 1 293 -19 519 291 124 9 chr4 79623109 79623319 -122705028 + MIR SINE MIR 26 259 -3 22 56 0 0 chr4 79624017 79624053 -122704294 + AT_rich Low_complexity Low_complexity 1 36 0 2089 146 0 3 chr4 79626430 79626738 -122701609 - AluSx SINE Alu -5 307 1 255 81 0 0 chr4 79627639 79627676 -122700671 - MADE1 DNA Mariner -42 38 2 2454 78 13 0 chr4 79628895 79629204 -122699143 + AluSp SINE Alu 1 313 0 723 242 66 35 chr4 79629418 79629645 -122698702 + MIR SINE MIR 19 252 -10 769 280 91 9 chr4 79630055 79630287 -122698060 - MIR SINE MIR 0 262 12 324 283 42 37 chr4 79630360 79630551 -122697796 + L1ME LINE L1 5583 5774 -347 294 287 111 66 chr4 79630874 79631055 -122697292 + MIR SINE MIR 48 236 -26 1878 128 7 21 chr4 79631589 79631879 -122696468 - AluSx SINE Alu -26 286 1 743 185 12 43 chr4 79631952 79632114 -122696233 + FRAM SINE Alu 1 157 -19 639 83 0 0 chr4 79632576 79632660 -122695687 - HY4 scRNA scRNA -9 84 1 2548 53 3 0 chr4 79632668 79632968 -122695379 - AluSp SINE Alu -12 301 1 287 267 133 20 chr4 79633498 79633648 -122694699 - L2 LINE L2 -23 3290 3124 1145 157 34 105 chr4 79633709 79633976 -122694371 - AluJo SINE Alu -18 294 47 2193 108 14 0 chr4 79634027 79634323 -122694024 + AluSg SINE Alu 1 300 -10 804 50 0 0 chr4 79634323 79634424 -122693923 + (GGAA)n Simple_repeat Simple_repeat 3 103 0 222 37 0 0 chr4 79635841 79635868 -122692479 + (CA)n Simple_repeat Simple_repeat 2 28 0 199 196 43 22 chr4 79636244 79636290 -122692057 + L2 LINE L2 3218 3264 -8 23 33 0 0 chr4 79636398 79636428 -122691919 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr4 79636594 79636618 -122691729 + AT_rich Low_complexity Low_complexity 1 24 0 3936 193 98 43 chr4 79636730 79637657 -122690690 + Charlie1a DNA MER1_type 1 999 -1762 2180 105 34 0 chr4 79637657 79637952 -122690395 + AluSp SINE Alu 1 305 -8 3936 193 98 43 chr4 79637952 79638128 -122690219 + Charlie1a DNA MER1_type 999 1164 -291 22 35 0 0 chr4 79638795 79638824 -122689523 + AT_rich Low_complexity Low_complexity 1 29 0 1877 160 3 7 chr4 79638842 79639136 -122689211 - AluJb SINE Alu -19 293 1 1040 182 118 57 chr4 79639185 79639625 -122688722 + L1MC5 LINE L1 7199 7665 -296 225 0 0 0 chr4 79639701 79639726 -122688621 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 444 258 32 32 chr4 79639833 79640019 -122688328 + L1MC5 LINE L1 7732 7917 -44 2248 105 0 13 chr4 79640542 79640855 -122687492 - AluSg1 SINE Alu 0 309 1 2045 132 0 7 chr4 79640897 79641199 -122687148 - AluSx SINE Alu 0 302 3 727 99 141 0 chr4 79641382 79641503 -122686844 + AluY SINE Alu 160 297 -14 1003 128 13 0 chr4 79642639 79642788 -122685559 + AluSc SINE Alu 145 295 -14 2256 88 3 0 chr4 79642846 79643131 -122685216 + AluSp SINE Alu 1 286 -27 225 0 0 0 chr4 79643131 79643156 -122685191 + (CA)n Simple_repeat Simple_repeat 2 26 0 1075 149 18 59 chr4 79643432 79643654 -122684693 + MER46A DNA MER2_type 23 235 -1 2356 98 0 0 chr4 79643991 79644287 -122684060 - AluSg SINE Alu -14 296 1 192 191 57 133 chr4 79645164 79645269 -122683078 - L2 LINE L2 -9 3304 3208 2417 38 0 10 chr4 79645596 79645887 -122682460 - AluY SINE Alu -21 290 3 2407 86 0 0 chr4 79645897 79646199 -122682148 - AluSq SINE Alu -11 302 1 2285 112 3 3 chr4 79646486 79646798 -122681549 + AluSx SINE Alu 1 312 0 189 394 26 31 chr4 79646807 79647000 -122681347 - L2 LINE L2 -840 2474 2283 2104 99 14 3 chr4 79647099 79647382 -122680965 + AluSg SINE Alu 1 286 -24 264 43 58 29 chr4 79647382 79647451 -122680896 + (TA)n Simple_repeat Simple_repeat 1 71 0 2509 61 3 3 chr4 79647696 79648006 -122680341 + AluY SINE Alu 1 310 -1 380 338 121 0 chr4 79648006 79648163 -122680184 + MIR3 SINE MIR 24 199 -9 23 33 0 0 chr4 79648458 79648488 -122679859 + AT_rich Low_complexity Low_complexity 1 30 0 225 178 0 0 chr4 79648582 79648627 -122679720 + (TATG)n Simple_repeat Simple_repeat 2 46 0 568 198 58 0 chr4 79648735 79648856 -122679491 - MIR SINE MIR 0 262 135 429 214 48 112 chr4 79648861 79648951 -122679396 - L2 LINE L2 -1936 1378 1305 2344 109 0 0 chr4 79648951 79649255 -122679092 + AluSx SINE Alu 1 304 -8 429 214 48 112 chr4 79649255 79649351 -122678996 - L2 LINE L2 -2009 1305 1204 723 242 66 35 chr4 79649668 79649895 -122678452 + MIR SINE MIR 19 252 -10 769 280 91 9 chr4 79650305 79650537 -122677810 - MIR SINE MIR 0 262 12 324 283 42 37 chr4 79650610 79650801 -122677546 + L1ME LINE L1 5583 5774 -347 294 287 111 66 chr4 79651124 79651305 -122677042 + MIR SINE MIR 48 236 -26 1878 128 7 21 chr4 79651839 79652129 -122676218 - AluSx SINE Alu -26 286 1 743 185 12 43 chr4 79652202 79652364 -122675983 + FRAM SINE Alu 1 157 -19 681 83 0 0 chr4 79652826 79652910 -122675437 - HY4 scRNA scRNA -9 84 1 2593 53 3 0 chr4 79652918 79653218 -122675129 - AluSp SINE Alu -12 301 1 231 267 133 20 chr4 79653748 79653898 -122674449 - L2 LINE L2 -23 3290 3124 1140 157 34 105 chr4 79653959 79654226 -122674121 - AluJo SINE Alu -18 294 47 2034 122 3 10 chr4 79654277 79654572 -122673775 + AluSg1 SINE Alu 1 293 -16 1586 161 4 8 chr4 79654588 79654848 -122673499 + AluSx SINE Alu 44 302 -10 744 125 23 16 chr4 79654859 79654987 -122673360 + AluJo SINE Alu 6 134 -178 818 176 99 0 chr4 79655451 79655593 -122672754 + AluJo SINE Alu 9 164 -148 483 69 0 0 chr4 79655593 79655665 -122672682 + (CA)n Simple_repeat Simple_repeat 1 72 0 1767 173 0 10 chr4 79656984 79657285 -122671062 + AluJb SINE Alu 1 298 -14 1926 133 10 7 chr4 79657589 79657882 -122670465 + AluY SINE Alu 1 294 -17 288 299 39 24 chr4 79658301 79658428 -122669919 + L3 LINE CR1 893 1021 -556 276 264 147 16 chr4 79658447 79658576 -122669771 + L3 LINE CR1 1329 1474 -103 1796 86 8 8 chr4 79659790 79660024 -122668323 + AluSq SINE Alu 1 234 -79 705 231 57 57 chr4 79664595 79664662 -122663685 - MIR SINE MIR -30 232 166 270 81 0 0 chr4 79664662 79664699 -122663648 + (TA)n Simple_repeat Simple_repeat 1 37 0 2416 82 0 7 chr4 79664699 79665002 -122663345 - AluSg SINE Alu -9 301 1 705 231 57 57 chr4 79665002 79665162 -122663185 - MIR SINE MIR -94 168 4 358 299 19 0 chr4 79665162 79665269 -122663078 - L1ME LINE L1 -371 5799 5691 1016 175 68 0 chr4 79665308 79665485 -122662862 - MER5A DNA MER1_type 0 189 1 2445 61 3 3 chr4 79665490 79665785 -122662562 + AluSp SINE Alu 1 295 -18 465 228 117 56 chr4 79665801 79665963 -122662384 - MER58C DNA MER1_type 0 215 44 241 203 40 0 chr4 79666104 79666178 -122662169 + L2 LINE L2 2571 2647 -667 708 292 160 29 chr4 79666246 79666316 -122662031 + L2 LINE L2 2424 2483 -831 1958 116 0 0 chr4 79666316 79666575 -122661772 - AluSx SINE Alu -6 306 48 708 292 160 29 chr4 79666575 79666960 -122661387 + L2 LINE L2 2483 2939 -375 2447 88 0 0 chr4 79667270 79667575 -122660772 + AluSg SINE Alu 1 305 -5 1425 207 42 66 chr4 79667779 79668112 -122660235 + MLT1A1 LTR MaLR 1 325 -40 1065 177 190 17 chr4 79668124 79668277 -122660070 - AluJo SINE Alu 0 309 184 405 0 0 0 chr4 79668277 79668322 -122660025 + (TG)n Simple_repeat Simple_repeat 2 46 0 1065 177 190 17 chr4 79668322 79668426 -122659921 - AluJo SINE Alu -125 184 12 289 83 0 0 chr4 79668438 79668474 -122659873 + MLT1A1 LTR MaLR 339 374 0 788 209 0 0 chr4 79668514 79668648 -122659699 + FLAM_A SINE Alu 1 134 -8 982 225 26 26 chr4 79668651 79668878 -122659469 + MIR SINE MIR 28 254 -8 244 292 142 0 chr4 79670332 79670452 -122657895 + MIR SINE MIR 49 185 -77 2390 86 0 16 chr4 79670665 79670979 -122657368 + AluSc SINE Alu 1 309 0 2418 60 3 0 chr4 79671023 79671327 -122657020 + AluSx SINE Alu 1 305 0 2916 153 19 40 chr4 79671362 79671548 -122656799 - MER44D DNA MER2_type -1883 604 416 2462 80 3 0 chr4 79671548 79671850 -122656497 + AluSx SINE Alu 1 303 -9 2916 153 19 40 chr4 79671850 79672115 -122656232 - MER44D DNA MER2_type -2071 416 108 2472 73 0 3 chr4 79672115 79672415 -122655932 + AluSc SINE Alu 1 299 -10 2916 153 19 40 chr4 79672415 79672480 -122655867 - MER44D DNA MER2_type -2379 108 43 2407 91 0 13 chr4 79672680 79672989 -122655358 + AluSc SINE Alu 1 305 -4 2346 92 7 13 chr4 79673260 79673566 -122654781 + AluSq SINE Alu 1 304 -9 212 131 16 33 chr4 79674089 79674104 -122654243 + A-rich Low_complexity Low_complexity 1 15 -45 2168 119 10 7 chr4 79674104 79674407 -122653940 + AluSg SINE Alu 1 304 -6 212 131 16 33 chr4 79674407 79674452 -122653895 + A-rich Low_complexity Low_complexity 15 60 0 767 152 115 55 chr4 79674510 79674675 -122653672 - FAM SINE Alu 0 175 1 415 232 26 46 chr4 79675011 79675162 -122653185 + L1MD2 LINE L1 6209 6356 -3 2396 104 0 0 chr4 79675199 79675506 -122652841 + AluSx SINE Alu 1 307 -5 296 314 199 11 chr4 79675506 79675697 -122652650 + MIR SINE MIR 25 251 -11 189 107 0 0 chr4 79675924 79675952 -122652395 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 210 162 27 0 chr4 79675962 79675999 -122652348 + (CA)n Simple_repeat Simple_repeat 1 38 0 252 215 15 111 chr4 79676413 79676548 -122651799 - L2 LINE L2 -230 3042 2921 683 185 0 8 chr4 79676927 79677046 -122651301 + FLAM_C SINE Alu 2 119 -24 225 65 0 0 chr4 79677046 79677077 -122651270 + (CATA)n Simple_repeat Simple_repeat 2 32 0 2142 125 42 33 chr4 79677112 79677471 -122650876 + THE1B LTR MaLR 1 362 -2 1857 183 34 3 chr4 79677665 79677993 -122650354 + LTR32 LTR ERVL 15 352 -119 587 165 0 17 chr4 79678037 79678152 -122650195 + LTR32 LTR ERVL 333 445 -26 904 143 8 0 chr4 79678190 79678323 -122650024 - AluSq/x SINE Alu -179 134 1 2257 79 24 0 chr4 79679081 79679371 -122648976 + AluSx SINE Alu 1 297 -15 649 233 30 0 chr4 79679767 79680065 -122648282 + L1ME3A LINE L1 5832 6170 0 2277 104 13 7 chr4 79680132 79680439 -122647908 + AluSq SINE Alu 1 309 -4 562 167 51 139 chr4 79680451 79680579 -122647768 + L1MB7 LINE L1 5932 6035 -149 1496 183 30 0 chr4 79680579 79680842 -122647505 - AluJb SINE Alu -39 273 3 562 167 51 139 chr4 79680842 79680929 -122647418 + L1MB7 LINE L1 6035 6128 -56 2108 128 0 3 chr4 79681049 79681353 -122646994 - AluSx SINE Alu -1 311 9 900 126 0 0 chr4 79681358 79681485 -122646862 - FLAM_C SINE Alu -2 131 5 688 218 14 7 chr4 79681648 79681790 -122646557 - MER5B DNA MER1_type 0 178 36 236 162 0 0 chr4 79681869 79681906 -122646441 - MER5B DNA MER1_type -134 44 8 184 250 54 18 chr4 79681947 79682003 -122646344 + MIR SINE MIR 65 122 -140 2317 102 0 0 chr4 79682296 79682589 -122645758 - AluSg SINE Alu -16 294 2 1062 239 58 55 chr4 79682829 79682945 -122645402 + MER102b DNA MER1_type 1 115 -1313 2169 116 3 0 chr4 79682945 79683246 -122645101 + AluSg SINE Alu 1 302 -8 1062 239 58 55 chr4 79683246 79683459 -122644888 + MER102b DNA MER1_type 115 331 -10 2306 92 3 0 chr4 79683490 79683782 -122644565 + AluSg SINE Alu 2 294 -16 1239 198 0 26 chr4 79683789 79684021 -122644326 - AluJo SINE Alu -86 226 1 2295 69 0 10 chr4 79684300 79684590 -122643757 + AluY SINE Alu 1 287 -24 863 103 0 0 chr4 79684605 79684753 -122643594 + AluSp/q SINE Alu 170 317 0 2461 87 3 0 chr4 79685673 79685982 -122642365 + AluSq SINE Alu 1 310 -3 2239 114 7 0 chr4 79686975 79687282 -122641065 + AluY SINE Alu 1 309 -2 587 208 60 0 chr4 79687306 79687455 -122640892 + L1MC5 LINE L1 7727 7884 -77 2211 129 0 0 chr4 79687632 79687942 -122640405 + AluSx SINE Alu 1 310 -2 2029 182 12 46 chr4 79688008 79688476 -122639871 + MLT1D LTR MaLR 1 545 -81 1109 256 108 58 chr4 79688518 79688688 -122639659 + L2 LINE L2 1263 1423 -1891 1477 175 80 4 chr4 79688688 79688962 -122639385 - AluJb SINE Alu -16 296 2 1109 256 108 58 chr4 79688962 79689374 -122638973 + L2 LINE L2 1423 1874 -1440 262 316 41 0 chr4 79689354 79689452 -122638895 - MIR SINE MIR -78 184 83 * 23 86 0 0 chr4 79689760 79689818 -122638529 + AT_rich Low_complexity Low_complexity 1 58 0 2172 114 0 0 chr4 79690043 79690332 -122638015 - AluSc SINE Alu -20 289 1 2361 102 0 0 chr4 79690396 79690699 -122637648 - AluSg SINE Alu -7 303 1 2203 104 3 17 chr4 79690824 79691123 -122637224 - AluSq SINE Alu -18 295 1 610 174 0 0 chr4 79691261 79691370 -122636977 - AluSp/q SINE Alu -1 312 204 342 96 0 39 chr4 79691370 79691408 -122636939 - AluSg/x SINE Alu -131 169 132 2161 113 3 3 chr4 79691408 79691708 -122636639 - AluSp SINE Alu -13 300 1 342 96 0 39 chr4 79691708 79691721 -122636626 - AluSg/x SINE Alu -168 132 120 227 255 0 0 chr4 79691848 79691899 -122636448 + MER34 LTR ERV1 25 75 -467 237 310 124 0 chr4 79691910 79692039 -122636308 + LTR48B LTR ERV1 155 299 -345 328 177 97 107 chr4 79692129 79692152 -122636195 + MER34C LTR ERV1 368 390 -152 1260 190 123 7 chr4 79692152 79692421 -122635926 - AluYa8 SINE Alu -8 302 3 328 177 97 107 chr4 79692421 79692588 -122635759 + MER34C LTR ERV1 390 530 -12 216 167 0 0 chr4 79693042 79693078 -122635269 + L2 LINE L2 3236 3271 -1 2442 71 3 0 chr4 79693993 79694289 -122634058 - AluSg SINE Alu -5 305 9 1962 143 0 3 chr4 79694306 79694592 -122633755 - AluJo SINE Alu -20 292 8 27 0 0 26 chr4 79694599 79694624 -122633723 + AT_rich Low_complexity Low_complexity 1 26 -11 2255 114 0 0 chr4 79694624 79694913 -122633434 - AluSx SINE Alu -23 289 1 27 0 0 26 chr4 79694913 79694925 -122633422 + AT_rich Low_complexity Low_complexity 26 37 0 657 99 272 0 chr4 79694963 79695105 -122633242 - MER30 DNA MER1_type -35 195 1 206 174 22 0 chr4 79695933 79695979 -122632368 + (CATATA)n Simple_repeat Simple_repeat 1 47 0 375 140 15 184 chr4 79695979 79696115 -122632232 - MIR SINE MIR -51 211 99 648 167 8 0 chr4 79696218 79696338 -122632009 - FLAM_C SINE Alu -1 142 22 488 246 190 22 chr4 79696372 79696456 -122631891 + MIR SINE MIR 26 95 -167 1736 86 5 0 chr4 79696456 79696678 -122631669 + AluSp SINE Alu 81 303 -10 488 246 190 22 chr4 79696678 79696772 -122631575 + MIR SINE MIR 95 234 -28 2200 86 65 0 chr4 79696891 79697181 -122631166 + AluSp SINE Alu 1 309 -4 2209 44 65 4 chr4 79697326 79697601 -122630746 + AluY SINE Alu 7 298 -13 1497 152 12 132 chr4 79698669 79698811 -122629536 + AluJo SINE Alu 1 158 -144 1621 191 17 3 chr4 79698811 79699110 -122629237 + AluJo SINE Alu 3 305 -7 2265 112 0 0 chr4 79699120 79699423 -122628924 + AluSg SINE Alu 1 303 -7 1497 152 12 132 chr4 79699423 79699611 -122628736 + AluJo SINE Alu 168 301 -1 698 159 0 0 chr4 79699707 79699814 -122628533 - FLAM_A SINE Alu -35 107 1 860 159 8 0 chr4 79700116 79700242 -122628105 - FLAM_C SINE Alu -16 127 1 388 260 81 8 chr4 79700488 79700611 -122627736 + L2 LINE L2 3182 3313 0 1721 181 13 7 chr4 79700646 79700945 -122627402 - AluJo SINE Alu -11 301 1 2283 113 3 0 chr4 79701019 79701319 -122627028 + AluSx SINE Alu 1 301 -11 2229 116 0 0 chr4 79701412 79701705 -122626642 + AluSq SINE Alu 1 293 -20 243 197 56 148 chr4 79701937 79702019 -122626328 - L1ME4a LINE L1 -38 6083 5995 1040 101 20 0 chr4 79702019 79702168 -122626179 + L1MA5 LINE L1 6143 6294 -6 186 103 0 0 chr4 79702174 79702203 -122626144 + (CATATA)n Simple_repeat Simple_repeat 3 31 0 243 197 56 148 chr4 79702203 79702255 -122626092 - L1ME4a LINE L1 -131 5990 5955 2811 197 67 44 chr4 79703278 79703482 -122624865 + L1MC4 LINE L1 7174 7372 -670 1518 179 16 35 chr4 79703482 79703794 -122624553 + AluJo SINE Alu 1 306 -6 2811 197 67 44 chr4 79703794 79704327 -122624020 + L1MC4 LINE L1 7372 7925 -117 2302 99 0 3 chr4 79704327 79704629 -122623718 + AluSq SINE Alu 2 302 -11 2811 197 67 44 chr4 79704629 79704651 -122623696 + L1MC4 LINE L1 7925 7945 -97 240 174 0 0 chr4 79704661 79704707 -122623640 + L1MD3 LINE L1 7940 7985 -10 209 264 0 19 chr4 79704981 79705034 -122623313 - MIR SINE MIR -143 119 68 189 193 53 35 chr4 79705162 79705219 -122623128 + L2 LINE L2 3213 3270 -2 2055 138 0 16 chr4 79706152 79706456 -122621891 - AluSx SINE Alu -13 299 1 2463 83 3 0 chr4 79706484 79706796 -122621551 - AluSp SINE Alu 0 313 1 1338 150 31 18 chr4 79707142 79707368 -122620979 + AluJb SINE Alu 1 229 -83 2183 113 10 13 chr4 79707840 79708150 -122620197 + AluSc SINE Alu 1 309 0 192 77 0 0 chr4 79708205 79708231 -122620116 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 668 289 95 53 chr4 79708581 79708992 -122619355 + MLT1K LTR MaLR 87 514 -74 2757 14 0 0 chr4 79709059 79709353 -122618994 + AluYa5 SINE Alu 12 305 -6 217 283 50 17 chr4 79709393 79709513 -122618834 - MIR SINE MIR -15 247 124 2305 86 7 0 chr4 79709579 79709870 -122618477 - AluSp SINE Alu -20 293 1 787 141 141 14 chr4 79710004 79710146 -122618201 - AluSg/x SINE Alu -18 294 135 2329 56 42 0 chr4 79710215 79710500 -122617847 + AluY SINE Alu 2 298 -13 1966 108 48 0 chr4 79710509 79710825 -122617522 + AluY SINE Alu 1 329 0 1313 167 0 39 chr4 79710835 79711068 -122617279 + AluJo SINE Alu 1 224 -88 1194 78 7 7 chr4 79711069 79711222 -122617125 - AluSp SINE Alu -160 153 1 1757 145 14 44 chr4 79711232 79711528 -122616819 - AluJb SINE Alu -14 298 12 21 0 0 0 chr4 79711574 79711595 -122616752 + AT_rich Low_complexity Low_complexity 1 21 0 623 315 46 62 chr4 79713051 79713759 -122614588 - L2 LINE L2 -219 3053 2284 22 0 0 0 chr4 79715593 79715615 -122612732 + AT_rich Low_complexity Low_complexity 1 22 0 246 143 0 0 chr4 79715719 79715768 -122612579 - L1MC3 LINE L1 -1 7784 7736 467 267 60 69 chr4 79715825 79715981 -122612366 - MIR SINE MIR -1 261 108 2568 56 3 0 chr4 79715981 79716283 -122612064 + AluSp SINE Alu 1 303 -10 467 267 60 69 chr4 79716283 79716378 -122611969 - MIR SINE MIR -154 108 14 693 195 8 0 chr4 79716435 79716563 -122611784 + FLAM_A SINE Alu 1 129 -4 191 186 0 23 chr4 79717984 79718027 -122610320 + L2 LINE L2 3272 3313 0 1665 83 64 134 chr4 79718328 79718641 -122609706 + AluSx SINE Alu 1 291 -21 2381 87 7 0 chr4 79718768 79719077 -122609270 - AluY SINE Alu 0 311 1 2005 121 0 4 chr4 79719342 79719622 -122608725 - AluSx SINE Alu -33 279 1 709 110 18 18 chr4 79720797 79720906 -122607441 - FLAM_C SINE Alu -12 131 23 2337 104 0 0 chr4 79721261 79721558 -122606789 + AluSx SINE Alu 1 297 -15 180 189 0 0 chr4 79721721 79721758 -122606589 + L2 LINE L2 3275 3311 -2 2919 147 26 16 chr4 79721990 79722494 -122605853 - L1PA16 LINE L1 -6 6160 5652 2410 80 0 7 chr4 79722580 79722880 -122605467 + AluSc SINE Alu 3 300 -9 2437 79 0 7 chr4 79722960 79723264 -122605083 + AluSg SINE Alu 1 302 -8 5433 178 29 24 chr4 79723308 79723917 -122604430 - L1PA16 LINE L1 -526 5640 5036 2303 94 7 16 chr4 79723917 79724225 -122604122 - AluSc SINE Alu -4 305 1 5433 178 29 24 chr4 79724225 79724700 -122603647 - L1PA16 LINE L1 -1130 5036 4549 2339 126 0 0 chr4 79724700 79725010 -122603337 - AluSx SINE Alu -2 310 1 5433 178 29 24 chr4 79725010 79725438 -122602909 - L1PA16 LINE L1 -1617 4549 4125 1688 170 50 3 chr4 79725506 79725789 -122602558 - AluJb SINE Alu -16 296 1 245 204 0 0 chr4 79726135 79726184 -122602163 - L1ME4a LINE L1 -105 6016 5968 1885 95 85 34 chr4 79726290 79726584 -122601763 - AluSx SINE Alu -3 309 1 231 324 14 0 chr4 79727012 79727083 -122601264 - Charlie8 DNA MER1_type -2169 248 177 596 237 65 5 chr4 79727113 79727299 -122601048 + MIR SINE MIR 40 236 -26 456 239 126 13 chr4 79727311 79727470 -122600877 + MER104 DNA MER2_type 1 177 -3 806 219 0 22 chr4 79727513 79727691 -122600656 + AluJo SINE Alu 120 293 -19 2169 95 0 3 chr4 79727799 79728109 -122600238 - AluSg SINE Alu 0 309 1 2875 176 36 81 chr4 79728223 79728490 -122599857 - MER82 DNA MER2_type 0 653 376 2299 93 13 19 chr4 79728490 79728800 -122599547 - AluSx SINE Alu -4 308 1 2875 176 36 81 chr4 79728800 79729009 -122599338 - MER82 DNA MER2_type -277 376 159 747 194 0 0 chr4 79729009 79729133 -122599214 + FLAM_C SINE Alu 1 124 -9 2875 176 36 81 chr4 79729133 79729252 -122599095 - MER82 DNA MER2_type -494 159 88 1740 195 3 0 chr4 79729252 79729544 -122598803 - AluJo SINE Alu -19 293 1 2875 176 36 81 chr4 79729544 79729615 -122598732 - MER82 DNA MER2_type -565 88 15 6578 126 82 11 chr4 79729952 79730559 -122597788 - Tigger3b DNA MER2_type -1806 1222 659 2184 96 41 0 chr4 79730559 79730852 -122597495 - AluSx SINE Alu -7 305 1 6578 126 82 11 chr4 79730852 79731382 -122596965 - Tigger3b DNA MER2_type -2369 659 5 2475 70 0 3 chr4 79731941 79732240 -122596107 - AluY SINE Alu -13 298 1 204 222 102 46 chr4 79732472 79732580 -122595767 + L2 LINE L2 3160 3273 -40 777 163 104 48 chr4 79732598 79732742 -122595605 - MER5C DNA MER1_type 0 324 159 2460 66 0 0 chr4 79732742 79733031 -122595316 - AluY SINE Alu -22 289 1 777 163 104 48 chr4 79733031 79733137 -122595210 - MER5C DNA MER1_type -165 159 60 2183 112 0 0 chr4 79733389 79733675 -122594672 - AluSx SINE Alu -26 286 1 1476 126 5 0 chr4 79734573 79734771 -122593576 + AluSx SINE Alu 1 199 -113 22 0 0 0 chr4 79735966 79735988 -122592359 + AT_rich Low_complexity Low_complexity 1 22 0 2143 97 3 42 chr4 79736350 79736658 -122591689 + AluSg SINE Alu 1 296 -14 275 305 26 71 chr4 79736677 79736831 -122591516 - MIR SINE MIR -70 192 46 1181 94 0 0 chr4 79736878 79737093 -122591254 - AluSg/x SINE Alu 0 351 137 2082 132 7 0 chr4 79737193 79737481 -122590866 - AluSx SINE Alu -22 290 1 2351 67 14 0 chr4 79737626 79737909 -122590438 - AluY SINE Alu -16 295 9 211 267 233 0 chr4 79738569 79738659 -122589688 - MIR SINE MIR -61 147 37 328 303 90 26 chr4 79739577 79739732 -122588615 - L2 LINE L2 0 3272 3108 844 289 62 15 chr4 79739986 79740322 -122588025 + Charlie2b DNA MER1_type 13 364 -2418 976 109 0 0 chr4 79740410 79740538 -122587809 + AluSg/x SINE Alu 174 301 -9 2756 116 5 3 chr4 79740540 79740929 -122587418 + MER39B LTR ERV1 264 653 0 613 254 79 0 chr4 79740929 79741094 -122587253 + Charlie2b DNA MER1_type 488 665 -2117 273 200 0 0 chr4 79741121 79741166 -122587181 + L1MB7 LINE L1 5995 6039 -145 593 217 31 0 chr4 79741217 79741346 -122587001 - FLAM_A SINE Alu 0 133 1 1676 150 284 18 chr4 79741346 79741430 -122586917 - Tigger7 DNA MER2_type -2006 481 421 2203 181 54 82 chr4 79741430 79741674 -122586673 + LTR9 LTR ERV1 1 250 -362 2210 118 0 3 chr4 79741674 79741978 -122586369 - AluSg SINE Alu -7 303 1 2203 181 54 82 chr4 79741978 79742363 -122585984 + LTR9 LTR ERV1 250 612 0 1676 150 284 18 chr4 79742363 79742658 -122585689 - Tigger7 DNA MER2_type -2066 421 1 1907 115 19 0 chr4 79742867 79743136 -122585211 + MER67A LTR ERV1 1 274 -269 862 101 0 8 chr4 79743137 79743256 -122585091 - AluY SINE Alu -18 293 176 1764 83 0 0 chr4 79743257 79743475 -122584872 - AluY SINE Alu -93 218 1 1124 158 142 0 chr4 79743476 79743723 -122584624 + MER67A LTR ERV1 262 543 0 1383 131 17 59 chr4 79744345 79744419 -122583928 + L1M3 LINE L1 5116 5192 -988 2382 99 0 0 chr4 79744419 79744721 -122583626 + AluSx SINE Alu 1 302 -10 1383 131 17 59 chr4 79744721 79744863 -122583484 + L1M3 LINE L1 5192 5317 -863 1934 155 3 0 chr4 79744863 79745159 -122583188 + AluJb SINE Alu 1 297 -15 1383 131 17 59 chr4 79745159 79745307 -122583040 + L1M3 LINE L1 5317 5470 -710 1919 172 30 0 chr4 79745312 79745615 -122582732 + AluJb SINE Alu 1 312 0 885 138 0 35 chr4 79745620 79745765 -122582582 + FLAM_C SINE Alu 1 140 -3 244 200 143 0 chr4 79745795 79745865 -122582482 + L1MA4 LINE L1 6126 6205 -95 707 106 49 8 chr4 79745927 79746050 -122582297 + L1M LINE L1 5299 5426 -754 292 191 44 0 chr4 79746073 79746141 -122582206 + L1MA4 LINE L1 6226 6296 -4 1188 159 80 0 chr4 79746148 79746374 -122581973 - L1MA7 LINE L1 -149 6142 5899 391 272 172 81 chr4 79746403 79746822 -122581525 - L2 LINE L2 -618 2696 2240 542 277 107 19 chr4 79746832 79746925 -122581422 - MIR SINE MIR -10 252 169 2477 55 0 16 chr4 79746925 79747232 -122581115 - AluY SINE Alu -9 302 1 542 277 107 19 chr4 79747232 79747344 -122581003 - MIR SINE MIR -93 169 29 624 165 0 0 chr4 79747482 79747585 -122580762 - FRAM SINE Alu -76 100 1 2157 89 14 0 chr4 79747948 79748262 -122580085 + AluSx SINE Alu 1 318 0 215 265 96 52 chr4 79748550 79748686 -122579661 + MIR SINE MIR 117 258 -4 423 321 101 22 chr4 79748690 79749048 -122579299 + L2 LINE L2 2591 2976 -338 186 222 83 42 chr4 79749217 79749289 -122579058 + L2 LINE L2 3197 3271 -1 1577 206 106 13 chr4 79749627 79750024 -122578323 + Charlie4a DNA MER1_type 20 453 -55 2231 88 3 0 chr4 79750088 79750395 -122577952 + AluSp SINE Alu 1 308 0 296 319 94 19 chr4 79750568 79750728 -122577619 + L1ME4a LINE L1 5950 6121 0 2233 125 0 0 chr4 79750777 79751080 -122577267 + AluSg SINE Alu 5 307 -3 234 0 0 0 chr4 79751121 79751147 -122577200 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1780 144 0 7 chr4 79751152 79751422 -122576925 - AluJb SINE Alu -44 268 1 186 186 47 0 chr4 79751782 79751825 -122576522 + MIR SINE MIR 218 262 0 2254 81 0 17 chr4 79752489 79752787 -122575560 - AluSx SINE Alu -19 293 1 2380 80 0 3 chr4 79753049 79753349 -122574998 - AluSg SINE Alu -11 299 1 362 239 142 112 chr4 79754425 79754693 -122573654 - L1M2 LINE L1 -6170 679 404 232 36 0 0 chr4 79754967 79754995 -122573352 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2087 114 0 0 chr4 79754995 79755276 -122573071 - AluSx SINE Alu -31 281 1 509 297 81 0 chr4 79755298 79755507 -122572840 - MIR SINE MIR -9 253 28 2307 95 30 0 chr4 79755665 79755969 -122572378 + AluSq SINE Alu 1 313 0 21 0 0 0 chr4 79756184 79756205 -122572142 + AT_rich Low_complexity Low_complexity 1 21 0 500 264 91 70 chr4 79756544 79756941 -122571406 - MLT1J LTR MaLR -91 420 16 276 235 20 69 chr4 79757497 79757599 -122570748 - MIR SINE MIR 0 262 166 1524 197 25 18 chr4 79757814 79758098 -122570249 - AluJo SINE Alu -26 286 1 2124 94 47 20 chr4 79758126 79758424 -122569923 - AluY SINE Alu -5 306 1 2376 86 13 0 chr4 79758424 79758727 -122569620 - AluSp SINE Alu -6 307 1 1511 182 4 4 chr4 79758754 79759012 -122569335 - AluSx SINE Alu -54 258 1 1633 185 40 13 chr4 79759324 79759438 -122568909 + AluJb SINE Alu 2 112 -200 2079 135 3 6 chr4 79759438 79759749 -122568598 + AluSx SINE Alu 1 310 -2 1633 185 40 13 chr4 79759749 79759936 -122568411 + AluJb SINE Alu 112 311 -1 2466 72 0 13 chr4 79759967 79760273 -122568074 - AluY SINE Alu -9 302 1 2184 108 3 3 chr4 79760273 79760569 -122567778 - AluSp SINE Alu -17 296 1 193 282 93 99 chr4 79760569 79760881 -122567466 + L2 LINE L2 2170 2479 -835 2208 211 116 4 chr4 79761001 79761509 -122566838 - MLT1F1 LTR MaLR 0 567 3 957 203 116 66 chr4 79761906 79762075 -122566272 + MLT1D LTR MaLR 1 160 -345 2454 73 0 0 chr4 79762075 79762376 -122565971 + AluY SINE Alu 1 301 -10 957 203 116 66 chr4 79762376 79762526 -122565821 + MLT1D LTR MaLR 160 336 -169 2304 82 3 23 chr4 79762695 79762999 -122565348 - AluSp SINE Alu -14 299 2 21 36 0 0 chr4 79763007 79763035 -122565312 + AT_rich Low_complexity Low_complexity 1 28 0 186 133 0 0 chr4 79763133 79763163 -122565184 + (TA)n Simple_repeat Simple_repeat 1 30 0 362 203 212 114 chr4 79763266 79763682 -122564665 - L1ME4a LINE L1 -161 5960 5511 23 78 0 0 chr4 79763847 79763898 -122564449 + AT_rich Low_complexity Low_complexity 1 51 0 778 147 0 31 chr4 79764789 79764918 -122563429 + FLAM_C SINE Alu 1 125 -18 23 0 0 0 chr4 79765300 79765323 -122563024 + AT_rich Low_complexity Low_complexity 1 23 0 2288 109 7 0 chr4 79765500 79765804 -122562543 + AluSx SINE Alu 1 306 -6 2184 120 0 7 chr4 79765813 79766114 -122562233 + AluSx SINE Alu 1 299 -13 2399 94 0 0 chr4 79766118 79766425 -122561922 + AluSx SINE Alu 3 309 -3 21 0 0 0 chr4 79766747 79766768 -122561579 + AT_rich Low_complexity Low_complexity 1 21 0 2220 105 3 7 chr4 79767051 79767345 -122561002 + AluSx SINE Alu 1 293 -19 992 198 0 0 chr4 79767452 79767624 -122560723 + FAM SINE Alu 1 172 -3 392 233 83 0 chr4 79768210 79768343 -122560004 - MIR SINE MIR -55 207 64 2206 111 24 0 chr4 79768351 79768648 -122559699 - AluSc SINE Alu -5 304 1 2421 76 0 0 chr4 79768833 79769135 -122559212 + AluY SINE Alu 1 302 -9 246 203 0 17 chr4 79769284 79769343 -122559004 + MARNA DNA Mariner 408 465 -121 1813 133 111 6 chr4 79769444 79769760 -122558587 + MER47A DNA MER2_type 18 366 0 397 184 51 20 chr4 79770530 79770628 -122557719 - MER103 DNA DNA -34 132 32 820 308 68 16 chr4 79770887 79771209 -122557138 + MER102b DNA MER1_type 3 341 0 826 181 22 70 chr4 79772564 79772791 -122555556 + MER20 DNA MER1_type 4 219 0 651 241 123 40 chr4 79772838 79773066 -122555281 - MIR SINE MIR -14 248 2 1149 273 79 3 chr4 79773178 79773519 -122554828 + L2 LINE L2 1954 2320 -994 277 205 36 0 chr4 79773530 79773613 -122554734 - L1MA10 LINE L1 -9 6325 6240 1390 92 11 0 chr4 79773649 79773834 -122554513 + AluY SINE Alu 1 187 -124 2976 198 83 21 chr4 79773875 79774193 -122554154 - L1M4 LINE L1 -1310 4836 4539 1985 151 13 0 chr4 79774193 79774497 -122553850 - AluJo SINE Alu -4 308 1 2976 198 83 21 chr4 79774497 79774971 -122553376 - L1M4 LINE L1 -1607 4539 3995 1556 242 113 23 chr4 79774971 79775450 -122552897 + L2 LINE L2 2191 2712 -602 287 303 152 0 chr4 79775695 79775840 -122552507 + MER117 DNA MER1_type 2 168 -29 448 221 99 0 chr4 79776204 79776335 -122552012 - L1ME1 LINE L1 -9 6157 6014 24 0 0 0 chr4 79777436 79777460 -122550887 + AT_rich Low_complexity Low_complexity 1 24 0 756 153 0 8 chr4 79777466 79777584 -122550763 - FLAM_C SINE Alu -26 117 1 2341 82 0 7 chr4 79778430 79778721 -122549626 - AluSg SINE Alu -21 289 1 2219 113 0 3 chr4 79778999 79779292 -122549055 + AluSq SINE Alu 1 292 -21 400 282 83 55 chr4 79780614 79780795 -122547552 + MIR3 SINE MIR 16 201 -7 330 246 157 8 chr4 79781085 79781219 -122547128 - L1MDa LINE L1 -4825 1715 1562 330 337 53 81 chr4 79781294 79781441 -122546906 - L2 LINE L2 -1911 1403 1253 2026 156 0 0 chr4 79781441 79781736 -122546611 + AluSx SINE Alu 1 295 -17 330 337 53 81 chr4 79781736 79782018 -122546329 - L2 LINE L2 -2061 1253 986 368 379 114 25 chr4 79782091 79782721 -122545626 - L2 LINE L2 -2527 787 102 5383 159 17 17 chr4 79783476 79784298 -122544049 + L1MC2 LINE L1 5089 5911 -433 2344 151 35 16 chr4 79784298 79784723 -122543624 - Tigger2a DNA MER2_type -1 433 1 5383 159 17 17 chr4 79784723 79785045 -122543302 + L1MC2 LINE L1 5911 6232 -112 10772 108 52 61 chr4 79785069 79786455 -122541892 + Tigger1 DNA MER2_type 30 1426 -992 1952 133 3 23 chr4 79786455 79786755 -122541592 - AluSg SINE Alu -16 294 1 10772 108 52 61 chr4 79786755 79786825 -122541522 + Tigger1 DNA MER2_type 1426 1495 -923 2310 117 3 0 chr4 79786825 79787134 -122541213 - AluSx SINE Alu -1 311 2 10772 108 52 61 chr4 79787134 79787654 -122540693 + Tigger1 DNA MER2_type 1495 1990 -428 1251 164 14 5 chr4 79787651 79787865 -122540482 + Tigger1 DNA MER2_type 2176 2391 -27 * 301 171 158 0 chr4 79787878 79787954 -122540393 + L1MC2 LINE L1 6257 6344 0 281 315 228 16 chr4 79788117 79788371 -122539976 - L2 LINE L2 -1067 2247 1940 311 336 96 57 chr4 79788371 79788651 -122539696 - L2 LINE L2 -1 3271 2981 353 188 125 0 chr4 79789215 79789311 -122539036 - L1MC5 LINE L1 -100 7861 7754 214 87 239 43 chr4 79789443 79789489 -122538858 - L2 LINE L2 -4 3268 3214 489 183 165 0 chr4 79789898 79790013 -122538334 - MER94 DNA DNA 0 134 1 183 80 0 0 chr4 79790201 79790226 -122538121 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1442 211 11 0 chr4 79790228 79790507 -122537840 - AluJb SINE Alu -30 282 1 1466 169 103 7 chr4 79790721 79790994 -122537353 + AluJb SINE Alu 1 299 -13 34 24 0 0 chr4 79791521 79791562 -122536785 + AT_rich Low_complexity Low_complexity 1 41 0 376 341 190 7 chr4 79791571 79791861 -122536486 - L3 LINE CR1 -46 1531 1189 352 283 64 29 chr4 79791879 79792052 -122536295 + L1MC5 LINE L1 7619 7797 -164 272 333 62 16 chr4 79792108 79792237 -122536110 - L3 LINE CR1 -938 639 505 450 281 67 42 chr4 79792711 79792949 -122535398 - L3 LINE CR1 -5 1572 1329 265 373 92 44 chr4 79792938 79793166 -122535181 - L2 LINE L2 0 3272 3034 * 22 35 0 0 chr4 79793875 79793904 -122534443 + AT_rich Low_complexity Low_complexity 1 29 0 380 270 97 36 chr4 79793939 79794135 -122534212 - HAL1 LINE L1 -293 2214 2007 804 262 68 103 chr4 79794195 79794340 -122534007 - HAL1 LINE L1 -609 1898 1749 315 0 0 0 chr4 79794340 79794375 -122533972 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1968 143 0 0 chr4 79794380 79794659 -122533688 - AluSx SINE Alu -33 279 1 804 262 68 103 chr4 79794659 79794724 -122533623 - HAL1 LINE L1 -762 1745 1679 2198 103 36 3 chr4 79794724 79795026 -122533321 - AluSq SINE Alu -1 312 1 804 262 68 103 chr4 79795026 79795460 -122532887 - HAL1 LINE L1 -828 1679 1270 1835 149 18 0 chr4 79795490 79795771 -122532576 - AluSx SINE Alu -26 286 1 25 0 0 0 chr4 79795825 79795850 -122532497 + AT_rich Low_complexity Low_complexity 1 25 0 604 0 0 0 chr4 79796181 79796254 -122532093 + L1PA2 LINE L1 6080 6152 -3 289 313 67 33 chr4 79796601 79796751 -122531596 + MIR SINE MIR 31 185 -77 260 263 88 125 chr4 79797153 79797393 -122530954 + MIR SINE MIR 18 248 -14 2276 105 0 7 chr4 79797438 79797743 -122530604 + AluSx SINE Alu 2 304 -8 232 105 211 0 chr4 79798179 79798217 -122530130 + Tigger4(Zombi) DNA MER2_type 1 46 -2685 1251 150 44 36 chr4 79798235 79798312 -122530035 - L1MA2 LINE L1 -108 6196 6121 1819 168 3 23 chr4 79798312 79798449 -122529898 + AluJb SINE Alu 1 139 -173 2154 120 0 0 chr4 79798449 79798740 -122529607 + AluSq SINE Alu 1 291 -22 1819 168 3 23 chr4 79798740 79798912 -122529435 + AluJb SINE Alu 139 304 -8 1251 150 44 36 chr4 79798912 79799108 -122529239 - L1MA2 LINE L1 -183 6121 5921 1109 131 39 24 chr4 79799124 79799330 -122529017 - L1MA1 LINE L1 -324 5978 5770 414 61 0 0 chr4 79799330 79799379 -122528968 + Tigger4(Zombi) DNA MER2_type 2682 2730 -1 1077 119 12 18 chr4 79799400 79799568 -122528779 - AluJo/FRAM SINE Alu -9 303 137 437 145 0 0 chr4 79799568 79799637 -122528710 - AluJ/FLAM SINE Alu -243 69 1 26 50 0 0 chr4 79801990 79802030 -122526317 + AT_rich Low_complexity Low_complexity 1 40 0 279 0 0 0 chr4 79802107 79802138 -122526209 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 626 238 13 7 chr4 79802378 79802529 -122525818 - L1ME3 LINE L1 0 6162 6011 2381 83 3 13 chr4 79802529 79802841 -122525506 - AluSx SINE Alu -3 309 1 701 201 50 0 chr4 79803231 79803370 -122524977 + FRAM SINE Alu 1 146 -30 366 309 91 29 chr4 79803405 79803648 -122524699 - L1M4 LINE L1 -1090 5056 4799 33 43 0 0 chr4 79803808 79803855 -122524492 + AT_rich Low_complexity Low_complexity 1 47 0 2011 111 0 4 chr4 79803855 79804126 -122524221 - AluSx SINE Alu -22 290 21 320 335 38 5 chr4 79804127 79804336 -122524011 - L1M4 LINE L1 -1558 4588 4373 180 0 0 0 chr4 79805025 79805045 -122523302 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 216 191 0 0 chr4 79805361 79805408 -122522939 + T-rich Low_complexity Low_complexity 1 47 0 2186 85 41 17 chr4 79806153 79806446 -122521901 - AluSx SINE Alu -12 300 1 206 195 146 0 chr4 79807545 79807586 -122520761 - L2 LINE L2 -8 3264 3218 1868 131 20 27 chr4 79808033 79808331 -122520016 - AluSq SINE Alu -17 296 1 471 30 30 0 chr4 79808941 79809008 -122519339 - AluSp/q SINE Alu -2 311 243 2361 94 0 22 chr4 79809008 79809328 -122519019 + AluSp SINE Alu 1 313 0 259 265 129 6 chr4 79809330 79809500 -122518847 + L1ME4a LINE L1 5718 5908 -213 2458 75 3 7 chr4 79809573 79809880 -122518467 + AluSq SINE Alu 1 306 -7 22 0 0 0 chr4 79809966 79809988 -122518359 + AT_rich Low_complexity Low_complexity 1 22 0 328 284 247 5 chr4 79810621 79810705 -122517642 + MIR SINE MIR 2 64 -198 647 235 27 55 chr4 79810705 79810888 -122517459 - MER5B DNA MER1_type 0 178 1 328 284 247 5 chr4 79810888 79810997 -122517350 + MIR SINE MIR 64 242 -20 2172 109 0 13 chr4 79811632 79811934 -122516413 + AluSx SINE Alu 1 298 -14 341 315 125 22 chr4 79811942 79812126 -122516221 + MIR SINE MIR 23 225 -37 1925 132 27 7 chr4 79812197 79812492 -122515855 - AluSx SINE Alu -11 301 1 221 211 18 0 chr4 79813500 79813557 -122514790 + CT-rich Low_complexity Low_complexity 3 60 0 266 132 13 171 chr4 79814285 79814361 -122513986 - MER20 DNA MER1_type -155 64 1 1270 294 46 28 chr4 79814393 79814890 -122513457 - HAL1 LINE L1 -1910 597 92 207 186 0 0 chr4 79814891 79814934 -122513413 + CT-rich Low_complexity Low_complexity 4 46 0 306 254 0 0 chr4 79814962 79815025 -122513322 - HAL1 LINE L1 -2443 64 2 327 187 13 27 chr4 79815474 79815549 -122512798 - MLT1E-int LTR MaLR -506 865 792 * 3337 159 50 5 chr4 79815532 79816135 -122512212 - MLT1E-int LTR MaLR -733 638 9 2111 107 0 28 chr4 79816896 79817224 -122511123 - AluSc SINE Alu 0 320 1 2172 122 0 19 chr4 79817326 79817645 -122510702 - AluSq SINE Alu 0 313 1 2278 85 10 7 chr4 79819019 79819313 -122509034 + AluSq SINE Alu 3 297 -16 1535 220 20 0 chr4 79821336 79821640 -122506707 + MLT1A1 LTR MaLR 49 358 -7 352 188 62 0 chr4 79822021 79822085 -122506262 - L2 LINE L2 -55 3258 3191 2422 108 92 48 chr4 79822090 79822148 -122506199 - L1M1 LINE L1 -4268 3297 3243 2082 118 13 3 chr4 79822148 79822453 -122505894 - AluSx SINE Alu -4 308 1 2422 108 92 48 chr4 79822453 79822850 -122505497 - L1M1 LINE L1 -4322 3243 2822 1516 256 23 50 chr4 79822853 79823295 -122505052 - MLT1E LTR MaLR -134 459 30 2123 134 3 10 chr4 79823532 79823846 -122504501 + AluSx SINE Alu 1 312 0 301 297 157 39 chr4 79823901 79824130 -122504217 + L2 LINE L2 2212 2467 -847 1505 176 64 39 chr4 79824234 79824564 -122503783 + MLT1E LTR MaLR 256 593 0 753 122 46 30 chr4 79824613 79824744 -122503603 - FLAM_C SINE Alu 0 133 1 205 266 0 31 chr4 79824772 79824836 -122503511 - L3 LINE CR1 -173 1404 1343 2346 102 7 0 chr4 79825110 79825415 -122502932 + AluSq SINE Alu 1 307 -6 255 265 219 23 chr4 79825423 79825642 -122502705 - L3 LINE CR1 -580 997 736 1088 294 121 18 chr4 79826368 79826882 -122501465 - L2 LINE L2 -1478 1836 1270 261 193 0 18 chr4 79827068 79827125 -122501222 - LTR65 LTR ERV1 -283 386 331 520 210 9 119 chr4 79827519 79827738 -122500609 - MLT1L LTR MaLR -377 238 44 316 200 141 0 chr4 79827771 79827856 -122500491 + MIR SINE MIR 92 188 -74 2458 65 14 0 chr4 79827865 79828159 -122500188 - AluY SINE Alu -13 298 1 870 91 0 0 chr4 79828166 79828276 -122500071 - AluSq/x SINE Alu -203 110 1 952 226 81 46 chr4 79828308 79828458 -122499889 - MLT1I LTR MaLR -14 395 252 1769 166 0 17 chr4 79828458 79828753 -122499594 + AluJb SINE Alu 1 290 -22 952 226 81 46 chr4 79828753 79828925 -122499422 - MLT1I LTR MaLR -157 252 62 949 232 82 17 chr4 79829096 79829329 -122499018 + MIR SINE MIR 15 262 0 245 287 20 54 chr4 79829359 79829398 -122498949 + MIR SINE MIR 35 74 -140 2298 81 10 10 chr4 79829398 79829696 -122498651 - AluSg SINE Alu -12 298 1 245 287 20 54 chr4 79829696 79829781 -122498566 + MIR SINE MIR 74 151 -63 831 273 63 29 chr4 79829802 79830040 -122498307 + MIR SINE MIR 7 252 -10 1854 164 7 0 chr4 79830680 79830967 -122497380 + AluJo SINE Alu 1 289 -23 796 56 39 28 chr4 79830967 79831145 -122497202 + (TA)n Simple_repeat Simple_repeat 1 180 0 584 268 73 39 chr4 79831518 79831723 -122496624 + L2 LINE L2 3102 3313 0 810 242 76 30 chr4 79831743 79832228 -122496119 - MER34 LTR ERV1 0 542 1 2271 100 33 0 chr4 79832784 79833085 -122495262 - AluSp SINE Alu -2 311 1 1752 159 7 33 chr4 79833623 79833925 -122494422 + AluJo SINE Alu 1 294 -18 23 0 0 0 chr4 79833926 79833949 -122494398 + AT_rich Low_complexity Low_complexity 1 23 0 3852 108 87 32 chr4 79834020 79834254 -122494093 + MER39B LTR ERV1 1 221 -432 2370 91 10 3 chr4 79834254 79834562 -122493785 + AluSq SINE Alu 1 310 -3 3852 108 87 32 chr4 79834562 79834946 -122493401 + MER39B LTR ERV1 221 653 0 430 20 0 0 chr4 79835730 79835779 -122492568 - U2 snRNA snRNA -136 52 4 1578 181 22 4 chr4 79835779 79836049 -122492298 - AluJb SINE Alu -32 280 6 21 36 0 0 chr4 79836053 79836081 -122492266 + AT_rich Low_complexity Low_complexity 1 28 0 602 106 11 53 chr4 79836083 79836177 -122492170 - FLAM_C SINE Alu -18 125 36 240 250 69 0 chr4 79836373 79836445 -122491902 + MER117 DNA MER1_type 72 148 -49 22 35 0 0 chr4 79837440 79837469 -122490878 + AT_rich Low_complexity Low_complexity 1 29 0 904 206 88 138 chr4 79837627 79837667 -122490680 + MLT1C LTR MaLR 6 46 -421 2182 125 0 0 chr4 79837667 79837964 -122490383 + AluSx SINE Alu 1 297 -15 904 206 88 138 chr4 79837964 79838146 -122490201 + MLT1C LTR MaLR 46 235 -232 1939 156 53 69 chr4 79838146 79838583 -122489764 + MSTB1 LTR MaLR 1 430 -2 904 206 88 138 chr4 79838583 79838599 -122489748 + MLT1C LTR MaLR 235 250 -217 2256 111 0 0 chr4 79838599 79838896 -122489451 + AluSx SINE Alu 3 299 -13 904 206 88 138 chr4 79838896 79839141 -122489206 + MLT1C LTR MaLR 250 467 0 22 56 0 0 chr4 79839591 79839627 -122488720 + AT_rich Low_complexity Low_complexity 1 36 0 1695 178 13 10 chr4 79839880 79840183 -122488164 - AluJb SINE Alu -8 304 1 2080 154 97 11 chr4 79840408 79840842 -122487505 - LTR54B LTR ERV1 -4 494 24 558 84 72 0 chr4 79840842 79840925 -122487422 - LTR54B LTR ERV1 -409 89 1 2337 72 3 7 chr4 79841580 79841873 -122486474 + AluSp SINE Alu 1 292 -21 3890 95 125 19 chr4 79842007 79842419 -122485928 - MER39B LTR ERV1 0 653 158 2378 72 3 20 chr4 79842419 79842723 -122485624 + AluSg SINE Alu 2 300 -10 3890 95 125 19 chr4 79842723 79842900 -122485447 - MER39B LTR ERV1 -495 158 1 2569 56 0 0 chr4 79842963 79843265 -122485082 - AluY SINE Alu -9 302 1 2526 122 134 122 chr4 79843267 79843866 -122484481 + MER4A LTR ERV1 8 617 -47 1916 150 34 0 chr4 79843866 79844159 -122484188 - AluSx SINE Alu -9 303 1 2526 122 134 122 chr4 79844159 79844208 -122484139 + MER4A LTR ERV1 617 664 0 2719 151 81 41 chr4 79844211 79844862 -122483485 + MER4A-int LTR ERV1 1 847 -5751 1406 138 41 82 chr4 79844864 79845133 -122483214 + AluJb SINE Alu 1 258 -54 213 39 0 0 chr4 79845140 79845166 -122483181 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3948 142 26 12 chr4 79845605 79846210 -122482137 + LTR31 LTR ERV1 3 616 -3 2303 98 0 3 chr4 79846324 79846621 -122481726 + AluSq SINE Alu 1 296 -17 2236 114 3 0 chr4 79846659 79846967 -122481380 + AluSx SINE Alu 1 309 -3 2147 129 10 3 chr4 79847113 79847422 -122480925 - AluSx SINE Alu -1 311 1 528 178 0 108 chr4 79847434 79847563 -122480784 - MER5B DNA MER1_type -44 134 20 345 169 17 0 chr4 79848652 79848711 -122479636 + MER5A DNA MER1_type 9 68 -121 963 103 45 7 chr4 79848730 79848885 -122479462 - L1MB3 LINE L1 0 6183 6023 2327 110 0 3 chr4 79848895 79849203 -122479144 - AluSx SINE Alu -5 307 1 213 245 19 0 chr4 79849214 79849267 -122479080 + MER5A DNA MER1_type 136 189 0 557 268 147 0 chr4 79849301 79849491 -122478856 - MIR SINE MIR -24 238 21 2485 71 0 13 chr4 79849504 79849814 -122478533 - AluSg SINE Alu -4 306 1 1372 162 0 0 chr4 79849815 79850025 -122478322 - AluJb SINE Alu -16 296 87 1149 171 90 26 chr4 79850797 79851031 -122477316 - AluJo SINE Alu -63 249 1 553 219 150 44 chr4 79851086 79851246 -122477101 - MER5B DNA MER1_type -1 177 1 195 354 25 13 chr4 79851268 79851347 -122477000 + L2 LINE L2 3185 3264 -8 1004 219 9 82 chr4 79851455 79851592 -122476755 - MER93b LTR ERV1 0 373 228 2307 107 7 0 chr4 79851592 79851901 -122476446 - AluSq SINE Alu -2 311 1 1004 219 9 82 chr4 79851901 79852106 -122476241 - MER93b LTR ERV1 -145 228 75 289 239 0 109 chr4 79852232 79852324 -122476023 - MIR SINE MIR -111 151 70 571 192 188 81 chr4 79852475 79852660 -122475687 - L1MC5 LINE L1 -46 7915 7691 2203 106 7 3 chr4 79852660 79852962 -122475385 + AluSq SINE Alu 1 303 -10 571 192 188 81 chr4 79852962 79853047 -122475300 - L1MC5 LINE L1 -270 7691 7616 23 0 0 0 chr4 79853060 79853083 -122475264 + AT_rich Low_complexity Low_complexity 1 23 0 2254 109 0 3 chr4 79853085 79853388 -122474959 + AluSq SINE Alu 1 302 -11 992 170 0 0 chr4 79853389 79853581 -122474766 + AluSg/x SINE Alu 132 323 0 1197 198 25 25 chr4 79853636 79853914 -122474433 - L1MC5 LINE L1 -384 7577 7300 1600 146 110 0 chr4 79853916 79854197 -122474150 - AluJb SINE Alu 0 312 1 1858 106 80 15 chr4 79854683 79854957 -122473390 - AluSx SINE Alu -20 292 1 387 277 45 45 chr4 79855192 79855416 -122472931 - L1MC/D LINE L1 -1985 5823 5600 263 149 40 128 chr4 79856122 79856162 -122472185 + MER113 DNA MER1_type? 108 150 -371 2365 89 9 22 chr4 79856162 79856477 -122471870 + AluSx SINE Alu 1 311 -1 263 149 40 128 chr4 79856477 79856584 -122471763 + MER113 DNA MER1_type? 150 242 -279 2061 87 63 14 chr4 79856611 79856897 -122471450 + AluSq SINE Alu 1 300 -13 191 298 81 40 chr4 79857304 79857502 -122470845 + L3 LINE CR1 1371 1576 -1 2148 139 0 7 chr4 79857637 79857946 -122470401 + AluSx SINE Alu 1 307 -5 2134 95 7 14 chr4 79858043 79858353 -122469994 + AluSp SINE Alu 1 308 0 557 164 157 37 chr4 79858534 79858668 -122469679 - MLT1H1 LTR MaLR 0 555 406 784 153 0 0 chr4 79858708 79858832 -122469515 + Charlie1 DNA MER1_type 2632 2755 -6 737 223 153 99 chr4 79858912 79859272 -122469075 - L2 LINE L2 -733 2581 2193 2449 68 0 0 chr4 79859272 79859565 -122468782 + AluY SINE Alu 1 293 -18 737 223 153 99 chr4 79859565 79859630 -122468717 - L2 LINE L2 -1121 2193 2133 1877 93 0 4 chr4 79859631 79859867 -122468480 + AluSx SINE Alu 1 235 -77 316 169 39 39 chr4 79859898 79859975 -122468372 - L2 LINE L2 -1317 1997 1921 572 335 62 37 chr4 79860013 79860637 -122467710 - L2 LINE L2 -417 2897 2258 243 175 18 18 chr4 79860959 79861016 -122467331 + MER5B DNA MER1_type 5 61 -117 665 203 0 0 chr4 79861017 79861150 -122467197 + L1MA7 LINE L1 5397 5529 -762 524 169 0 0 chr4 79861151 79861234 -122467113 + AluJ/FLAM SINE Alu 3 85 -227 2475 149 14 50 chr4 79861234 79861718 -122466629 + L1MA7 LINE L1 5807 6275 -16 1583 172 7 35 chr4 79861718 79862040 -122466307 + AluJo SINE Alu 1 314 0 2475 149 14 50 chr4 79862040 79862056 -122466291 + L1MA7 LINE L1 6275 6290 -1 347 269 37 9 chr4 79862093 79862201 -122466146 - MER5B DNA MER1_type -67 111 1 189 0 0 0 chr4 79863038 79863059 -122465288 + (TA)n Simple_repeat Simple_repeat 2 22 0 2290 129 0 0 chr4 79863064 79863374 -122464973 - AluSx SINE Alu 0 312 3 1669 251 106 62 chr4 79863386 79863927 -122464420 - MLT1E LTR MaLR -8 616 1 200 276 122 51 chr4 79864006 79864104 -122464243 + MIR SINE MIR 36 140 -68 3760 107 0 4 chr4 79864134 79864647 -122463700 - MER9 LTR ERVK 0 511 1 614 251 18 108 chr4 79864755 79864821 -122463526 + L1ME4a LINE L1 5549 5619 -502 2080 195 87 30 chr4 79864821 79865313 -122463034 + MLT2B1 LTR ERVL 1 520 0 614 251 18 108 chr4 79865313 79865422 -122462925 + L1ME4a LINE L1 5619 5736 -385 1110 43 0 134 chr4 79865422 79865552 -122462795 - L1PA8 LINE L1 -1 6171 6072 2385 31 63 7 chr4 79865552 79865838 -122462509 - AluY SINE Alu -9 302 1 1110 43 0 134 chr4 79865838 79865893 -122462454 - L1PA8 LINE L1 -100 6072 6011 614 251 18 108 chr4 79865893 79866115 -122462232 + L1ME4a LINE L1 5736 5911 -210 2240 78 25 0 chr4 79866250 79866533 -122461814 + AluSp SINE Alu 1 290 -23 970 192 70 47 chr4 79867271 79867485 -122460862 + MER20 DNA MER1_type 1 219 0 4786 159 30 39 chr4 79867541 79867799 -122460548 + L1MB7 LINE L1 4833 5092 -1267 2957 0 0 0 chr4 79867799 79868108 -122460239 - AluYa5 SINE Alu -2 309 1 2617 53 0 0 chr4 79868110 79868409 -122459938 - AluY SINE Alu -12 299 1 4786 159 30 39 chr4 79868409 79868513 -122459834 + L1MB7 LINE L1 5093 5197 -1162 2383 101 0 0 chr4 79868513 79868811 -122459536 + AluSg SINE Alu 1 298 -12 4786 159 30 39 chr4 79868811 79869698 -122458649 + L1MB7 LINE L1 5197 6112 -247 2267 95 0 30 chr4 79869698 79870003 -122458344 + AluSc SINE Alu 1 296 -13 4786 159 30 39 chr4 79870003 79870249 -122458098 + L1MB7 LINE L1 6112 6359 0 2161 129 3 0 chr4 79870344 79870653 -122457694 - AluSx SINE Alu 0 312 3 249 50 50 25 chr4 79871199 79871239 -122457108 + L1MB8 LINE L1 6044 6084 -94 1801 129 26 62 chr4 79871241 79871419 -122456928 - MER46B DNA MER2_type -2495 236 199 2392 94 0 0 chr4 79871419 79871718 -122456629 - AluSp SINE Alu -12 301 3 1801 129 26 62 chr4 79871718 79871879 -122456468 - MER46B DNA MER2_type -2532 199 34 2066 128 7 0 chr4 79871879 79872169 -122456178 - AluSx SINE Alu -20 292 1 397 162 0 0 chr4 79872169 79872237 -122456110 + L1MB8 LINE L1 6111 6178 0 591 262 95 9 chr4 79872332 79872553 -122455794 + MIR SINE MIR 20 259 -3 519 182 170 25 chr4 79873004 79873163 -122455184 - MER53 DNA DNA -4 185 4 631 233 0 41 chr4 79874149 79874321 -122454026 + MIR SINE MIR 97 261 -1 242 229 0 49 chr4 79874434 79874495 -122453852 + L2 LINE L2 3251 3308 -5 1996 139 0 25 chr4 79874511 79874827 -122453520 + AluJb SINE Alu 1 308 -4 1063 158 0 6 chr4 79875039 79875203 -122453144 + AluJb SINE Alu 135 297 -15 1752 168 0 33 chr4 79875217 79875521 -122452826 + AluJo SINE Alu 6 299 -13 282 306 153 9 chr4 79875772 79875988 -122452359 - MIR SINE MIR -6 256 10 1868 167 3 3 chr4 79876056 79876368 -122451979 + AluJo SINE Alu 1 312 0 278 302 43 17 chr4 79876718 79876834 -122451513 - MER5B DNA MER1_type -58 120 2 331 370 17 17 chr4 79877110 79877291 -122451056 + MIR SINE MIR 2 182 -80 360 0 0 0 chr4 79877369 79877409 -122450938 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2249 84 0 7 chr4 79877412 79877721 -122450626 - AluSx SINE Alu 0 307 1 1889 166 7 0 chr4 79877967 79878268 -122450079 - AluJb SINE Alu -5 307 5 240 35 0 0 chr4 79878792 79878821 -122449526 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 399 234 75 0 chr4 79879100 79879207 -122449140 - MER103 DNA DNA -2 164 50 1950 138 3 7 chr4 79880326 79880651 -122447696 + AluSx SINE Alu 1 324 0 2318 113 0 10 chr4 79880785 79881096 -122447251 - AluSx SINE Alu -4 308 1 260 278 44 0 chr4 79881298 79881388 -122446959 + L2 LINE L2 2451 2544 -770 2463 76 0 13 chr4 79881388 79881702 -122446645 - AluY SINE Alu -1 310 1 360 229 0 0 chr4 79881719 79881789 -122446558 - MER116 DNA Mariner -3 77 8 1958 147 10 7 chr4 79881824 79882131 -122446216 + AluJb SINE Alu 1 308 -4 197 260 0 0 chr4 79882144 79882194 -122446153 + L2 LINE L2 2595 2644 -670 339 230 32 62 chr4 79882237 79882394 -122445953 + MLT1J LTR MaLR 3 158 -353 1656 181 0 7 chr4 79883228 79883505 -122444842 + AluJb SINE Alu 4 278 -34 866 27 0 9 chr4 79883505 79883615 -122444732 + (GAAA)n Simple_repeat Simple_repeat 3 111 0 2352 91 3 10 chr4 79883615 79884018 -122444329 + AluSp SINE Alu 2 402 0 699 222 141 15 chr4 79884073 79884238 -122444109 + MER5C DNA MER1_type 20 163 -161 705 80 0 0 chr4 79884238 79884338 -122444009 - L1PA14 LINE L1 0 6161 6062 699 222 141 15 chr4 79884338 79884442 -122443905 + MER5C DNA MER1_type 163 323 -1 560 213 0 0 chr4 79885341 79885449 -122442898 - AluSc SINE Alu -11 298 191 393 250 46 66 chr4 79885723 79885875 -122442472 + Charlie8 DNA MER1_type 12 160 -2257 2184 88 10 10 chr4 79886396 79886691 -122441656 - AluSc SINE Alu -14 295 1 314 292 83 2 chr4 79886764 79886946 -122441401 - MIR SINE MIR -10 252 24 1843 157 0 65 chr4 79887243 79887368 -122440979 + AluJb SINE Alu 1 133 -179 2346 101 0 7 chr4 79887368 79887666 -122440681 - AluSc SINE Alu -12 297 2 2267 108 0 0 chr4 79887670 79887966 -122440381 - AluSg SINE Alu -14 296 1 1843 157 0 65 chr4 79887966 79888159 -122440188 + AluJb SINE Alu 136 303 -9 327 245 78 59 chr4 79888273 79888375 -122439972 + MLT1J LTR MaLR 310 413 -98 212 283 236 0 chr4 79888462 79888568 -122439779 + L3 LINE CR1 1389 1519 -58 370 301 16 52 chr4 79888998 79889106 -122439241 - MER117 DNA MER1_type -5 192 93 1194 183 179 8 chr4 79889106 79889363 -122438984 - AluJo SINE Alu -1 301 1 370 301 16 52 chr4 79889363 79889447 -122438900 - MER117 DNA MER1_type -104 93 7 466 200 48 48 chr4 79889864 79890029 -122438318 + L1ME4a LINE L1 5946 6110 -11 2363 98 0 0 chr4 79890107 79890413 -122437934 + AluY SINE Alu 1 306 -5 2184 95 14 14 chr4 79890417 79890713 -122437634 + AluSq SINE Alu 1 296 -17 2085 106 24 7 chr4 79890716 79891008 -122437339 + AluSx SINE Alu 1 297 -15 811 146 15 0 chr4 79891886 79892016 -122436331 - FLAM_C SINE Alu -1 132 1 21 0 0 0 chr4 79892127 79892148 -122436199 + AT_rich Low_complexity Low_complexity 1 21 0 943 129 7 7 chr4 79892152 79892291 -122436056 + AluJb SINE Alu 1 139 -173 2300 95 0 3 chr4 79892298 79892593 -122435754 + AluSg SINE Alu 1 294 -16 1061 158 17 6 chr4 79893131 79893308 -122435039 + AluSg/x SINE Alu 121 299 -13 321 226 44 107 chr4 79893819 79893911 -122434436 - Charlie8 DNA MER1_type -181 160 81 2526 50 3 0 chr4 79893911 79894209 -122434138 + AluY SINE Alu 1 299 -12 321 226 44 107 chr4 79894209 79894275 -122434072 - Charlie8 DNA MER1_type -260 81 12 1371 222 139 27 chr4 79895321 79895498 -122432849 + L2 LINE L2 2533 2689 -624 2256 113 0 3 chr4 79895498 79895800 -122432547 + AluY SINE Alu 1 301 -10 1371 222 139 27 chr4 79895800 79896307 -122432040 + L2 LINE L2 2689 3312 -1 1616 186 17 10 chr4 79896777 79897073 -122431274 + AluJb SINE Alu 1 298 -14 2014 145 16 10 chr4 79897468 79897778 -122430569 + AluSx SINE Alu 1 312 0 430 281 22 24 chr4 79897813 79898058 -122430289 + LTR16C LTR ERVL 188 479 -12 412 221 115 8 chr4 79898952 79899074 -122429273 + MIR3 SINE MIR 28 162 -46 2068 111 0 0 chr4 79899783 79900044 -122428303 + AluSq SINE Alu 1 261 -52 264 30 0 0 chr4 79900055 79900088 -122428259 + (CA)n Simple_repeat Simple_repeat 2 34 0 329 336 0 36 chr4 79900143 79900283 -122428064 + MER5A DNA MER1_type 55 189 0 513 331 35 17 chr4 79901009 79901299 -122427048 + L1MEd LINE L1 46 340 -5779 1383 169 0 102 chr4 79901552 79901724 -122426623 - AluJo SINE Alu -31 281 93 2387 77 0 3 chr4 79901724 79902021 -122426326 + AluSx SINE Alu 2 297 -15 2226 92 3 0 chr4 79902028 79902321 -122426026 + AluSx SINE Alu 1 294 -18 1383 169 0 102 chr4 79902321 79902453 -122425894 - AluJo SINE Alu -225 87 1 213 250 0 0 chr4 79902512 79902568 -122425779 + L2 LINE L2 2921 2976 -337 1592 87 142 32 chr4 79903449 79903729 -122424618 - AluY SINE Alu 0 308 1 194 400 46 10 chr4 79903749 79904054 -122424293 + L2 LINE L2 2006 2321 -993 1906 103 48 19 chr4 79904081 79904374 -122423973 + AluSg SINE Alu 1 301 0 3745 109 0 4 chr4 79904395 79904908 -122423439 - MER9 LTR ERVK 0 511 1 549 302 85 58 chr4 79904956 79905284 -122423063 + L2 LINE L2 2931 3267 -5 4245 140 11 11 chr4 79905296 79905996 -122422351 - L1MA6 LINE L1 -1 6299 5600 183 182 114 0 chr4 79906538 79906582 -122421765 + MIR SINE MIR 88 136 -126 325 307 113 48 chr4 79907331 79907624 -122420723 + L1MC4a LINE L1 5732 6045 -76 2212 115 0 16 chr4 79907814 79908119 -122420228 + AluSx SINE Alu 1 300 -12 1151 175 0 17 chr4 79908396 79908573 -122419774 + FAM SINE Alu 1 174 -1 2003 116 7 7 chr4 79909599 79909916 -122418431 - AluSx SINE Alu 0 317 1 279 300 73 88 chr4 79910310 79910583 -122417764 + L1MC/D LINE L1 5474 5742 -2066 1998 202 154 28 chr4 79910599 79911093 -122417254 + MER74A LTR ERVL 2 557 -1 2258 85 4 0 chr4 79911262 79911543 -122416804 - AluSp SINE Alu -17 296 15 37 0 0 21 chr4 79911637 79911662 -122416685 + AT_rich Low_complexity Low_complexity 1 26 -21 1679 154 43 11 chr4 79911662 79911941 -122416406 - AluJb SINE Alu -24 288 1 37 0 0 21 chr4 79911941 79911963 -122416384 + AT_rich Low_complexity Low_complexity 26 47 0 243 0 0 0 chr4 79911967 79911994 -122416353 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 404 175 4 10 chr4 79911996 79912247 -122416100 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr4 79912254 79912276 -122416071 + AT_rich Low_complexity Low_complexity 1 22 0 316 100 40 0 chr4 79912297 79912347 -122416000 - L1MB1 LINE L1 -1 6167 6116 1588 193 7 20 chr4 79912348 79912586 -122415761 - AluJb SINE Alu -20 292 57 4078 152 115 21 chr4 79912586 79913341 -122415006 + LTR1B LTR ERV1 1 826 0 1588 193 7 20 chr4 79913341 79913398 -122414949 - AluJb SINE Alu -255 57 1 1311 162 117 4 chr4 79913398 79913645 -122414702 - L1MB1 LINE L1 -39 6129 5855 459 181 6 103 chr4 79913645 79913722 -122414625 + MER34C LTR ERV1 1 76 -493 2364 71 0 7 chr4 79913722 79914018 -122414329 + AluY SINE Alu 1 294 -17 459 181 6 103 chr4 79914018 79914051 -122414296 + MER34C LTR ERV1 76 111 -458 2336 103 0 0 chr4 79914055 79914356 -122413991 + AluSq SINE Alu 1 301 -12 1631 163 0 32 chr4 79914370 79914647 -122413700 + AluSx SINE Alu 9 276 -36 249 91 0 0 chr4 79914648 79914681 -122413666 + Alu SINE Alu 242 274 -27 1023 133 0 0 chr4 79914681 79914824 -122413523 + AluJo/FRAM SINE Alu 158 300 -12 694 204 7 29 chr4 79914829 79914960 -122413387 + MER34B LTR ERV1 143 270 -295 2301 154 30 58 chr4 79914960 79915375 -122412972 - MER65C LTR ERV1 0 461 59 1263 154 166 24 chr4 79915375 79915628 -122412719 - AluJo SINE Alu -13 289 1 2301 154 30 58 chr4 79915628 79915679 -122412668 - MER65C LTR ERV1 -402 59 8 2184 117 0 7 chr4 79915679 79915979 -122412368 - AluSq SINE Alu -15 298 1 1050 128 61 118 chr4 79915992 79916321 -122412026 + MER34B LTR ERV1 256 565 0 1496 160 27 57 chr4 79916332 79916506 -122411841 - AluJo SINE Alu -18 294 131 2306 87 28 0 chr4 79916506 79916793 -122411554 - AluSg SINE Alu -15 295 1 1496 160 27 57 chr4 79916793 79916918 -122411429 - AluJo SINE Alu -181 131 4 577 96 0 0 chr4 79916923 79917006 -122411341 - L1M3 LINE L1 -345 5823 5741 1122 169 13 7 chr4 79917007 79917214 -122411133 - MER34 LTR ERV1 -344 198 1 314 278 93 19 chr4 79917216 79917378 -122410969 + L1MEc LINE L1 1251 1424 -4972 851 167 0 20 chr4 79917396 79917546 -122410801 - LTR7 LTR ERV1 0 450 304 873 131 8 18 chr4 79917749 79917916 -122410431 - LTR7 LTR ERV1 -232 218 2 2354 179 78 118 chr4 79917916 79918670 -122409677 - LTR8A LTR ERV1 -3 724 1 2424 76 0 3 chr4 79918862 79919165 -122409182 + AluSg SINE Alu 1 302 -8 1303 170 5 0 chr4 79919168 79919374 -122408973 + AluSg/x SINE Alu 85 291 -19 760 195 60 30 chr4 79919596 79920048 -122408299 + MER4C LTR ERV1 19 465 0 1972 137 10 17 chr4 79920968 79921268 -122407079 - AluSx SINE Alu -14 298 1 284 238 267 0 chr4 79921685 79921790 -122406557 - MER115 DNA AcHobo -62 631 499 1173 119 24 0 chr4 79921791 79921959 -122406388 + AluSg/x SINE Alu 132 303 -9 560 273 88 73 chr4 79922128 79922388 -122405959 - MER115 DNA AcHobo -423 270 7 314 275 0 0 chr4 79923065 79923145 -122405202 + L1ME LINE L1 5590 5669 -452 29 70 0 0 chr4 79923302 79923359 -122404988 + AT_rich Low_complexity Low_complexity 1 57 0 2316 96 30 0 chr4 79923365 79923668 -122404679 - AluSx SINE Alu 0 312 1 490 246 116 60 chr4 79923793 79923992 -122404355 - MER63A DNA MER1_type 0 210 1 2109 135 0 3 chr4 79924051 79924355 -122403992 - AluSx SINE Alu -9 303 1 195 139 0 0 chr4 79924366 79924402 -122403945 + (A)n Simple_repeat Simple_repeat 1 36 0 236 245 206 0 chr4 79924656 79924758 -122403589 - MER115 DNA AcHobo -70 623 501 2292 88 0 7 chr4 79924761 79925058 -122403289 + AluY SINE Alu 1 295 -16 234 225 205 66 chr4 79925068 79925219 -122403128 + L2 LINE L2 3081 3252 -61 991 103 0 22 chr4 79925451 79925587 -122402760 + FLAM_C SINE Alu 1 133 0 311 169 131 9 chr4 79925801 79925879 -122402468 + AluS SINE Alu 2 73 -229 * 1063 172 63 88 chr4 79925875 79926044 -122402303 + MLT1F1 LTR MaLR 97 269 -273 1720 133 14 38 chr4 79926044 79926337 -122402010 + AluJo SINE Alu 27 312 0 1063 172 63 88 chr4 79926337 79926491 -122401856 + MLT1F1 LTR MaLR 269 465 -77 2177 101 7 17 chr4 79926491 79926788 -122401559 + AluSx SINE Alu 1 294 -18 1063 172 63 88 chr4 79926788 79926865 -122401482 + MLT1F1 LTR MaLR 465 542 0 842 249 183 18 chr4 79926871 79927373 -122400974 + MLT1F1-int LTR MaLR 4 588 -783 280 309 63 16 chr4 79927530 79927721 -122400626 + L1ME LINE L1 5352 5551 -611 2322 100 3 7 chr4 79927801 79928102 -122400245 - AluSx SINE Alu -12 300 1 1960 111 39 4 chr4 79928223 79928502 -122399845 - AluSx SINE Alu -23 289 1 742 228 119 27 chr4 79929462 79929756 -122398591 - HsTC2 DNA Tc2 -31 1867 1547 582 101 8 18 chr4 79929761 79930018 -122398329 + AluSx SINE Alu 1 311 -1 1348 173 99 42 chr4 79930028 79930311 -122398036 + AluJo SINE Alu 1 299 -13 527 200 111 30 chr4 79930353 79930488 -122397859 + L1ME3A LINE L1 6020 6165 -5 340 242 81 0 chr4 79930497 79930596 -122397751 - HsTC2 DNA Tc2 -542 1356 1250 421 176 200 16 chr4 79930601 79930726 -122397621 - HsTC2 DNA Tc2 -1738 160 13 1004 196 77 0 chr4 79930735 79930929 -122397418 - AluJb SINE Alu -17 295 87 2005 111 0 0 chr4 79930967 79931228 -122397119 + AluSq SINE Alu 1 261 -52 257 247 0 55 chr4 79931348 79931421 -122396926 - L1ME LINE L1 -306 5815 5747 1720 85 167 19 chr4 79932769 79933039 -122395308 + AluSp SINE Alu 1 310 -3 198 0 0 0 chr4 79933444 79933466 -122394881 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 193 281 158 12 chr4 79934051 79934133 -122394214 - L3 LINE CR1 -1317 260 167 26 0 0 0 chr4 79935227 79935253 -122393094 + AT_rich Low_complexity Low_complexity 1 26 0 360 245 27 54 chr4 79935503 79935650 -122392697 + MIR SINE MIR 116 258 -4 1334 164 99 10 chr4 79936022 79936334 -122392013 + MER33 DNA MER1_type 1 324 0 2462 65 0 13 chr4 79937434 79937740 -122390607 + AluY SINE Alu 1 302 -9 1623 142 0 84 chr4 79937745 79937928 -122390419 + AluJb SINE Alu 18 168 -144 7337 69 26 0 chr4 79937928 79938802 -122389545 + MER11D LTR ERVK 1 897 0 1623 142 0 84 chr4 79938802 79938914 -122389433 + AluJb SINE Alu 168 288 -24 199 303 26 26 chr4 79938981 79939057 -122389290 - MIR3 SINE MIR -11 197 122 302 293 143 83 chr4 79939525 79939959 -122388388 - L2 LINE L2 -6 3266 2807 376 169 0 0 chr4 79940101 79940166 -122388181 + L1ME2 LINE L1 6043 6107 -57 2048 134 7 0 chr4 79940166 79940464 -122387883 + AluSx SINE Alu 1 300 -12 256 173 0 67 chr4 79940488 79940563 -122387784 + L1ME2 LINE L1 6092 6161 -3 185 306 69 59 chr4 79941492 79941660 -122386687 - MIR SINE MIR -36 172 3 2570 68 0 3 chr4 79942154 79942465 -122385882 + AluY SINE Alu 1 310 -1 202 307 95 37 chr4 79942474 79942660 -122385687 + L2 LINE L2 2445 2619 -653 1957 152 7 0 chr4 79942660 79942956 -122385391 + AluSx SINE Alu 1 298 -14 202 307 95 37 chr4 79942956 79942975 -122385372 + L2 LINE L2 2619 3272 0 1139 151 11 5 chr4 79943092 79943277 -122385070 + AluSg/x SINE Alu 113 298 -14 416 282 103 0 chr4 79943527 79943644 -122384703 + L2 LINE L2 3182 3310 -3 1049 159 0 6 chr4 79943933 79944103 -122384244 - AluJb SINE Alu -10 302 134 832 208 84 87 chr4 79945474 79945561 -122382786 + MSTD LTR MaLR 3 89 -339 7763 51 17 0 chr4 79945561 79947251 -122381096 - L1PA5 LINE L1 -3 6151 4446 832 208 84 87 chr4 79947251 79947485 -122380862 + MSTD LTR MaLR 89 371 -57 6959 109 53 16 chr4 79948319 79949352 -122378995 + MER11C LTR ERVK 1 1071 0 1013 301 84 8 chr4 79949545 79949924 -122378423 + L2 LINE L2 2903 3310 -3 420 20 0 0 chr4 79949924 79949973 -122378374 + (CA)n Simple_repeat Simple_repeat 1 49 0 440 291 238 0 chr4 79949991 79950197 -122378150 + MIR SINE MIR 2 256 -6 2223 114 10 0 chr4 79950427 79950725 -122377622 - AluSx SINE Alu -10 302 2 360 279 232 29 chr4 79951482 79951758 -122376589 + L3 LINE CR1 1052 1383 -194 2396 88 3 7 chr4 79952409 79952715 -122375632 + AluSg SINE Alu 1 305 -5 281 239 0 34 chr4 79953297 79953385 -122374962 + MER5A DNA MER1_type 4 88 -101 199 227 0 0 chr4 79953382 79953426 -122374921 - MER5B DNA MER1_type -134 44 1 * 611 196 95 38 chr4 79953446 79953604 -122374743 + MER5B DNA MER1_type 12 178 0 22 0 0 0 chr4 79953648 79953670 -122374677 + AT_rich Low_complexity Low_complexity 1 22 0 1775 134 56 83 chr4 79954282 79954656 -122373691 + THE1B LTR MaLR 1 364 0 1811 139 0 4 chr4 79955248 79955507 -122372840 + AluSx SINE Alu 1 258 -54 6272 174 41 24 chr4 79955641 79957182 -122371165 + L1M3f LINE L1 42 1613 -4065 948 126 7 0 chr4 79957282 79957445 -122370902 + L1PA11 LINE L1 6027 6190 0 274 329 0 0 chr4 79957446 79957522 -122370825 - LTR16A1 LTR ERVL -375 82 7 743 144 0 0 chr4 79957710 79957828 -122370519 - L1MA6 LINE L1 -107 6193 6076 * 1000 141 31 6 chr4 79957814 79957977 -122370370 + L1MA7 LINE L1 5777 5943 -348 677 315 63 60 chr4 79957995 79958623 -122369724 - ERVL LTR ERVL -439 5325 4656 1971 152 7 3 chr4 79958836 79959138 -122369209 + AluJo SINE Alu 2 304 -8 5592 48 3 2 chr4 79959277 79959916 -122368431 - L1PA7 LINE L1 -13 6141 5502 9728 46 7 0 chr4 79960016 79961218 -122367129 + L1P LINE L1 2868 4077 -2069 15904 42 2 1 chr4 79961352 79963296 -122365051 - L1PA7 LINE L1 -2730 3416 1470 1850 154 27 3 chr4 79964373 79964666 -122363681 + AluSx SINE Alu 4 303 -9 692 60 0 0 chr4 79964697 79964780 -122363567 + AluY SINE Alu 2 84 -227 2090 182 14 8 chr4 79965032 79965395 -122362952 + MLT1A1 LTR MaLR 1 365 0 679 290 57 75 chr4 79965653 79966402 -122361945 + L1MEd LINE L1 449 1184 -4935 2348 200 32 24 chr4 79966403 79966868 -122361479 - ERVL LTR ERVL -1634 4130 3662 305 299 34 8 chr4 79966991 79967108 -122361239 - L2 LINE L2 -789 2525 2406 1272 254 149 33 chr4 79967110 79967820 -122360527 - L2 LINE L2 -1 3312 2520 852 226 42 71 chr4 79967822 79968044 -122360303 - L2 LINE L2 -1178 2136 1922 2414 89 3 0 chr4 79968044 79968348 -122359999 + AluSq SINE Alu 1 305 -8 852 226 42 71 chr4 79968348 79968408 -122359939 - L2 LINE L2 -1392 1922 1862 930 166 103 77 chr4 79968408 79968689 -122359658 + L1MB7 LINE L1 5876 6165 -18 3928 111 9 4 chr4 79968789 79969478 -122358869 - L1P5 LINE L1 -349 5802 5108 366 204 0 45 chr4 79970553 79970641 -122357706 + MIR SINE MIR 59 142 -66 398 257 168 42 chr4 79971146 79971366 -122356981 + MIR SINE MIR 5 250 -12 3185 153 45 16 chr4 79971971 79972545 -122355802 + L1MB8 LINE L1 5588 6178 0 834 168 0 29 chr4 79972749 79972886 -122355461 - FLAM_C SINE Alu 0 133 1 967 234 39 27 chr4 79973044 79973300 -122355047 + MIR SINE MIR 2 260 -2 285 291 77 50 chr4 79973669 79973889 -122354458 - L2 LINE L2 -80 3233 3008 1752 149 0 18 chr4 79974149 79974430 -122353917 + AluJo SINE Alu 32 307 -5 2152 59 74 0 chr4 79974902 79975173 -122353174 - AluSp SINE Alu -21 292 2 889 175 0 0 chr4 79975267 79975410 -122352937 - FAM SINE Alu -27 158 16 1129 241 119 33 chr4 79975926 79976345 -122352002 - LTR16A1 LTR ERVL 0 457 3 343 311 30 48 chr4 79976552 79976719 -122351628 - L2 LINE L2 -472 2842 2679 426 231 216 0 chr4 79977519 79977653 -122350694 + L2 LINE L2 2641 2803 -511 1512 178 95 57 chr4 79977653 79978002 -122350345 + MLT1A2 LTR MaLR 1 362 -12 1266 253 142 31 chr4 79978006 79978464 -122349883 + L2 LINE L2 2805 3313 0 1694 161 0 53 chr4 79978688 79978992 -122349355 - AluJo SINE Alu -10 302 15 2367 97 0 0 chr4 79979157 79979466 -122348881 - AluSc SINE Alu 0 309 1 1047 227 88 76 chr4 79980959 79981457 -122346890 - L1ME4a LINE L1 -16 6105 5602 2400 103 0 0 chr4 79981571 79981871 -122346476 + AluSc SINE Alu 1 300 -9 286 302 171 79 chr4 79982476 79982728 -122345619 - L2 LINE L2 -173 3099 2825 493 270 92 11 chr4 79982790 79982964 -122345383 + MIR SINE MIR 6 193 -69 236 272 88 40 chr4 79984259 79984384 -122343963 + L2 LINE L2 3173 3303 -10 223 235 25 62 chr4 79984642 79984723 -122343624 - L3 LINE CR1 -3 1574 1497 2267 111 7 0 chr4 79985621 79985918 -122342429 + AluSx SINE Alu 1 299 -13 399 235 50 42 chr4 79986294 79986413 -122341934 + MIR SINE MIR 13 132 -130 487 333 121 37 chr4 79986606 79986987 -122341360 + L2 LINE L2 2546 2958 -356 2271 244 77 9 chr4 79986987 79987556 -122340791 + MLT2E LTR ERVL 2 609 -19 263 263 50 30 chr4 79987584 79987683 -122340664 + L2 LINE L2 2986 3086 -227 723 266 20 10 chr4 79987822 79988021 -122340326 + Charlie7 DNA MER1_type 219 419 -2193 865 272 21 8 chr4 79988022 79988265 -122340082 + Charlie7 DNA MER1_type 219 464 -2148 300 302 104 0 chr4 79988464 79988570 -122339777 + L2 LINE L2 3195 3311 -2 1895 129 44 0 chr4 79988970 79989274 -122339073 + AluSx SINE Alu 1 316 0 4379 83 7 2 chr4 79989474 79990090 -122338257 - L1P LINE L1 -750 5396 4778 1840 143 0 18 chr4 79990107 79990393 -122337954 - AluJo SINE Alu -31 281 1 350 279 158 38 chr4 79990591 79990685 -122337662 + L2 LINE L2 2115 2196 -1118 414 39 0 0 chr4 79990685 79990737 -122337610 + (CA)n Simple_repeat Simple_repeat 2 53 0 350 279 158 38 chr4 79990737 79990882 -122337465 + L2 LINE L2 2196 2383 -931 2753 212 158 128 chr4 79991006 79992032 -122336315 + L2 LINE L2 28 1273 -2041 816 184 0 13 chr4 79992032 79992190 -122336157 - FRAM SINE Alu -3 173 18 2753 212 158 128 chr4 79992190 79992627 -122335720 + L2 LINE L2 1273 1696 -1618 306 0 0 0 chr4 79992628 79992662 -122335685 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 294 281 338 25 chr4 79992774 79993094 -122335253 + L2 LINE L2 2862 3281 -32 2026 70 31 0 chr4 79994859 79995116 -122333231 + AluSp SINE Alu 16 280 -33 225 0 0 0 chr4 79995120 79995145 -122333202 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 754 209 105 0 chr4 79995535 79995707 -122332640 - MIR SINE MIR -32 230 41 362 237 124 41 chr4 79995721 79995890 -122332457 + MER90 LTR ERV1 1 183 -392 811 194 0 0 chr4 79996089 79996213 -122332134 + FLAM_C SINE Alu 2 125 -18 744 277 66 9 chr4 79996339 79996552 -122331795 - MLT1J LTR MaLR -234 277 53 849 169 7 39 chr4 79996717 79996871 -122331476 - MER106B DNA MER1_type -910 149 1 285 270 209 0 chr4 79997072 79997187 -122331160 + MIR SINE MIR 49 187 -75 2019 129 26 0 chr4 79997402 79997704 -122330643 - AluSq SINE Alu -3 310 1 327 317 189 48 chr4 79999970 80000454 -122327893 - L2 LINE L2 0 3272 2705 777 130 0 16 chr4 80001104 80001227 -122327120 + MLT1B LTR MaLR 3 123 -267 4218 227 43 26 chr4 80001245 80002619 -122325728 + L1MDa LINE L1 902 2400 -3982 1766 162 15 0 chr4 80002666 80002937 -122325410 - AluJb SINE Alu -24 288 14 744 136 38 0 chr4 80002970 80003102 -122325245 - L1 LINE L1 -2389 5176 5040 * 1203 77 0 0 chr4 80003096 80003251 -122325096 - L1 LINE L1 -4637 2928 2774 753 180 144 0 chr4 80003249 80003388 -122324959 - L1 LINE L1 -5580 1985 1827 * 873 277 45 29 chr4 80053408 80053722 -122274625 + HERV16 LTR ERVL 2164 2482 -2514 5347 84 11 1 chr4 80053782 80054539 -122273808 - L1MA2 LINE L1 0 6304 5541 981 179 18 0 chr4 80054539 80054757 -122273590 - L1MA2 LINE L1 -953 5193 4972 258 229 64 64 chr4 80054932 80055072 -122273275 + L1MC4 LINE L1 7902 8041 -1 417 282 86 46 chr4 80055099 80055747 -122272600 + L1MDa LINE L1 3182 3855 -2527 266 306 16 0 chr4 80055793 80055914 -122272433 + L1MDa LINE L1 4960 5082 -1300 975 125 22 38 chr4 80055930 80056114 -122272233 - THE1C LTR MaLR 0 375 195 8084 51 3 1 chr4 80056229 80057253 -122271094 + HERVL LTR ERVL 1375 2400 -3254 481 285 23 8 chr4 80058453 80058583 -122269764 - MIR SINE MIR -109 153 22 341 308 0 0 chr4 80059440 80059518 -122268829 - L2 LINE L2 -1 3271 3194 23 33 0 0 chr4 80060378 80060408 -122267939 + AT_rich Low_complexity Low_complexity 1 30 0 1828 128 3 14 chr4 80060429 80060726 -122267621 - L1PA15 LINE L1 0 6165 5872 1219 138 0 0 chr4 80060898 80061065 -122267282 - AluJb SINE Alu -12 300 134 1095 70 26 0 chr4 80061625 80061781 -122266566 - L1M1 LINE L1 -4710 2855 2696 5952 147 64 0 chr4 80061798 80062539 -122265808 - L1M1 LINE L1 -5001 2564 1735 240 35 0 0 chr4 80062539 80062568 -122265779 + (TC)n Simple_repeat Simple_repeat 2 30 0 5952 147 64 0 chr4 80062568 80062878 -122265469 - L1M1 LINE L1 -5830 1735 1446 328 296 94 56 chr4 80062979 80063212 -122265135 + L1ME LINE L1 109 350 -5720 388 284 27 14 chr4 80063361 80063509 -122264838 + L1ME LINE L1 331 480 -5590 445 235 63 89 chr4 80063667 80064093 -122264254 + L1ME LINE L1 491 905 -5178 2065 136 6 0 chr4 80064197 80064536 -122263811 - L1MB3 LINE L1 -104 6079 5739 2370 86 0 0 chr4 80064559 80064851 -122263496 - AluSx SINE Alu -20 292 1 195 327 47 19 chr4 80065017 80065124 -122263223 + L2 LINE L2 1868 1977 -1337 668 261 86 71 chr4 80065320 80065714 -122262633 + LTR33A LTR ERVL 124 523 0 355 332 60 13 chr4 80065731 80065963 -122262384 - L2 LINE L2 -804 2510 2268 1169 288 50 19 chr4 80066004 80066427 -122261920 + L2 LINE L2 2823 3258 -55 562 341 100 0 chr4 80067345 80067565 -122260782 - MIR SINE MIR 0 262 21 3821 152 23 27 chr4 80067885 80068948 -122259399 - L1 LINE L1 -3590 3975 2920 4316 184 39 20 chr4 80069082 80070140 -122258207 - L1 LINE L1 -2002 5563 4486 307 264 11 22 chr4 80071173 80071264 -122257083 + MLT1I LTR MaLR 68 157 -252 1114 187 20 8 chr4 80071305 80071611 -122256736 - MLT1A1 LTR MaLR -2 363 10 335 256 178 0 chr4 80071665 80071755 -122256592 + MLT1J2 LTR MaLR 274 379 -71 2255 167 46 32 chr4 80072499 80072997 -122255350 + Tigger1 DNA MER2_type 2 506 -1912 401 316 99 59 chr4 80073317 80073647 -122254700 - L2 LINE L2 0 3272 2930 193 293 0 0 chr4 80074049 80074090 -122254257 - L2 LINE L2 -16 3256 3216 1243 137 0 0 chr4 80074212 80074402 -122253945 - L1P LINE L1 -5946 200 11 189 107 0 0 chr4 80074553 80074581 -122253766 + (T)n Simple_repeat Simple_repeat 1 28 0 180 97 0 0 chr4 80074635 80074666 -122253681 + (A)n Simple_repeat Simple_repeat 1 31 0 973 260 20 5 chr4 80074834 80075230 -122253117 - L1M4 LINE L1 -2990 3156 2755 1927 262 37 8 chr4 80075371 80076316 -122252031 + L1M4 LINE L1 4221 5242 -904 2081 115 10 23 chr4 80076360 80076664 -122251683 - AluSg SINE Alu -10 300 1 23 68 0 0 chr4 80076922 80076966 -122251381 + AT_rich Low_complexity Low_complexity 1 44 0 717 259 53 9 chr4 80077269 80077590 -122250757 + L1MDa LINE L1 2300 2634 -3906 266 241 0 54 chr4 80077598 80077710 -122250637 - L1 LINE L1 -3058 4507 4402 1916 241 45 14 chr4 80077723 80078460 -122249887 + L1MDa LINE L1 2641 3400 -3140 21 36 0 0 chr4 80078462 80078490 -122249857 + AT_rich Low_complexity Low_complexity 1 28 0 3065 135 84 6 chr4 80079443 80079932 -122248415 - MER1A DNA MER1_type 0 527 1 9800 56 1 0 chr4 80080409 80081720 -122246627 - L1P LINE L1 -3429 2717 1406 2222 198 4 4 chr4 80081820 80082330 -122246017 + L1P5 LINE L1 4904 5416 -740 4538 87 27 3 chr4 80082330 80082997 -122245350 + L1MA1 LINE L1 5620 6302 0 2222 198 4 4 chr4 80082997 80083014 -122245333 + L1P5 LINE L1 5416 5431 -725 279 221 240 29 chr4 80083186 80083290 -122245057 + MIR SINE MIR 125 250 -12 188 267 0 22 chr4 80083400 80083445 -122244902 + MIR SINE MIR 18 61 -201 1152 63 0 0 chr4 80083446 80083588 -122244759 - AluY SINE Alu -9 302 161 4466 188 41 14 chr4 80083688 80084570 -122243777 - L1 LINE L1 -6641 924 19 342 250 18 62 chr4 80085155 80085267 -122243080 + L2 LINE L2 3180 3286 -27 201 74 0 0 chr4 80086020 80086047 -122242300 + (CTTTG)n Simple_repeat Simple_repeat 1 27 0 18684 161 20 9 chr4 80086417 80089861 -122238486 - L1M1 LINE L1 -4067 3498 16 234 149 85 0 chr4 80090098 80090145 -122238202 + AluJo SINE Alu 85 135 -167 342 237 0 21 chr4 80090290 80090383 -122237964 + LTR67 LTR ERVL 457 547 -10 216 197 0 49 chr4 80090666 80090727 -122237620 + A-rich Low_complexity Low_complexity 1 58 0 181 279 23 0 chr4 80090766 80090809 -122237538 + L2 LINE L2 3251 3294 -19 586 179 73 8 chr4 80091207 80091330 -122237017 + MIR SINE MIR 100 230 -32 394 278 93 61 chr4 80092793 80093106 -122235241 + L1ME4a LINE L1 5721 6043 -78 23 0 0 0 chr4 80093171 80093194 -122235153 + AT_rich Low_complexity Low_complexity 1 23 0 251 91 23 0 chr4 80094322 80094366 -122233981 + MADE1 DNA Mariner 1 45 -35 2643 88 5 44 chr4 80094606 80094797 -122233550 - THE1C LTR MaLR -2 373 203 1560 168 74 35 chr4 80094797 80095112 -122233235 - AluSx SINE Alu 0 312 1 2643 88 5 44 chr4 80095112 80095308 -122233039 - THE1C LTR MaLR -172 203 1 1965 157 0 7 chr4 80095350 80095650 -122232697 - AluSx SINE Alu -14 298 1 181 286 152 38 chr4 80095690 80095795 -122232552 - L2 LINE L2 -215 3057 2941 291 130 0 0 chr4 80095842 80095888 -122232459 + Alu SINE Alu 1 46 -262 473 233 150 0 chr4 80099545 80099665 -122228682 - MIR SINE MIR -22 240 103 440 303 34 58 chr4 80099745 80099953 -122228394 - MIR SINE MIR -58 204 2 * 831 332 63 14 chr4 80099953 80100316 -122228031 - L2 LINE L2 -512 2802 2422 290 270 159 8 chr4 80100397 80100523 -122227824 + L2 LINE L2 3167 3311 -2 1453 81 63 32 chr4 80100589 80100810 -122227537 - MER30 DNA MER1_type -2 228 1 414 55 0 0 chr4 80100864 80100919 -122227428 - MER30 DNA MER1_type -175 55 1 3460 208 123 132 chr4 80100977 80101232 -122227115 + HAL1 LINE L1 213 469 -2038 640 134 14 106 chr4 80101232 80101374 -122226973 + FLAM_A SINE Alu 1 129 -4 3460 208 123 132 chr4 80101374 80101631 -122226716 + HAL1 LINE L1 469 727 -1780 680 212 63 77 chr4 80101631 80101853 -122226494 + MER20 DNA MER1_type 1 219 0 3460 208 123 132 chr4 80101853 80102567 -122225780 + HAL1 LINE L1 727 1446 -1061 1122 179 168 41 chr4 80102567 80102835 -122225512 + AluJb SINE Alu 1 302 0 3460 208 123 132 chr4 80102835 80103922 -122224425 + HAL1 LINE L1 1446 2507 0 490 274 157 8 chr4 80103946 80104194 -122224153 + L1MC4a LINE L1 5584 5868 -1940 356 219 73 115 chr4 80104233 80104425 -122223922 + L1MC4a LINE L1 5870 6053 -1755 1491 77 56 5 chr4 80104493 80104689 -122223658 + AluSc SINE Alu 85 290 -19 9083 39 1 1 chr4 80104721 80105792 -122222555 + MER11C LTR ERVK 1 1071 0 275 295 162 14 chr4 80105883 80106093 -122222254 - L2 LINE L2 -805 2509 2269 636 223 69 21 chr4 80106394 80106582 -122221765 + MER58A DNA MER1_type 26 222 -2 378 292 124 67 chr4 80107148 80107526 -122220821 + L2 LINE L2 2618 3004 -268 248 263 143 38 chr4 80107560 80107693 -122220654 + L2 LINE L2 3158 3304 -9 943 199 132 4 chr4 80107714 80107986 -122220361 + L1MB7 LINE L1 5878 6184 0 1921 139 7 0 chr4 80108505 80108786 -122219561 + AluJb SINE Alu 30 312 0 267 263 197 0 chr4 80108853 80108990 -122219357 - LTR16C LTR ERVL -9 482 319 203 281 31 0 chr4 80109736 80109800 -122218547 + MIR SINE MIR 89 154 -108 2292 86 7 0 chr4 80110046 80110336 -122218011 + AluSc SINE Alu 1 292 -17 921 220 89 5 chr4 80113290 80113504 -122214843 - MIR SINE MIR 0 262 31 495 331 89 45 chr4 80114272 80114541 -122213806 + L2 LINE L2 2992 3272 0 1835 147 29 29 chr4 80114828 80114969 -122213378 + AluJb SINE Alu 1 141 -171 2057 112 49 0 chr4 80114969 80115254 -122213093 + AluSx SINE Alu 1 299 -13 1835 147 29 29 chr4 80115254 80115419 -122212928 + AluJb SINE Alu 140 307 -5 192 214 48 95 chr4 80115486 80115570 -122212777 + MIR3 SINE MIR 123 202 -6 23 78 0 0 chr4 80116053 80116104 -122212243 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr4 80116183 80116205 -122212142 + AT_rich Low_complexity Low_complexity 1 22 0 528 261 145 30 chr4 80117353 80117587 -122210760 - MIR SINE MIR 0 262 2 299 188 50 25 chr4 80117721 80117801 -122210546 - L1ME4a LINE L1 -215 5906 5825 2544 123 33 3 chr4 80117971 80118360 -122209987 + MSTA LTR MaLR 1 401 -27 2165 119 3 0 chr4 80118389 80118683 -122209664 - AluSc SINE Alu -14 295 1 286 103 0 0 chr4 80118683 80118722 -122209625 + MSTA LTR MaLR 388 426 0 362 117 33 0 chr4 80118789 80118849 -122209498 + MIR SINE MIR 90 151 -111 187 349 0 16 chr4 80118875 80118938 -122209409 + L2 LINE L2 3211 3272 0 195 42 0 0 chr4 80119489 80119513 -122208834 + (CA)n Simple_repeat Simple_repeat 2 25 0 455 285 54 0 chr4 80120437 80120567 -122207780 - MIR SINE MIR -49 213 77 25 0 0 0 chr4 80120680 80120705 -122207642 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr4 80120712 80120736 -122207611 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1806 111 0 8 chr4 80120747 80120991 -122207356 - AluSx SINE Alu -70 242 1 29 0 0 0 chr4 80121108 80121137 -122207210 + AT_rich Low_complexity Low_complexity 1 29 0 429 288 121 20 chr4 80121488 80121686 -122206661 - MIR SINE MIR -13 249 32 230 253 76 38 chr4 80122068 80122147 -122206200 + MER5A DNA MER1_type 1 82 -107 226 179 0 26 chr4 80122237 80122315 -122206032 + (TA)n Simple_repeat Simple_repeat 1 76 0 210 214 36 0 chr4 80122331 80122387 -122205960 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 281 159 0 14 chr4 80122433 80122502 -122205845 + (TA)n Simple_repeat Simple_repeat 1 68 0 1543 181 50 0 chr4 80122503 80122780 -122205567 - AluJo SINE Alu -16 296 6 251 266 0 31 chr4 80122781 80122845 -122205502 + MER5B DNA MER1_type 117 178 0 843 169 23 0 chr4 80122915 80123045 -122205302 - FLAM_A SINE Alu 0 133 1 210 298 0 0 chr4 80123239 80123296 -122205051 + MIR3 SINE MIR 98 154 -54 1854 146 3 53 chr4 80123547 80123869 -122204478 - AluJo SINE Alu -6 306 1 317 239 11 33 chr4 80123900 80123992 -122204355 + MIR SINE MIR 173 262 0 837 149 0 22 chr4 80124167 80124301 -122204046 - FLAM_A SINE Alu -2 131 1 1096 217 48 4 chr4 80125629 80125878 -122202469 - MIR SINE MIR -2 260 1 2547 147 36 49 chr4 80126909 80127379 -122200968 + MLT2C2 LTR ERVL 1 464 0 4761 157 12 27 chr4 80127511 80128394 -122199953 + L1MB7 LINE L1 5298 6167 -17 279 241 81 0 chr4 80128637 80128724 -122199623 - MIR SINE MIR -10 252 159 1986 165 0 9 chr4 80129377 80129692 -122198655 - AluSx SINE Alu 0 312 1 787 144 75 27 chr4 80130558 80130704 -122197643 + AluJb SINE Alu 138 290 -22 36 0 0 0 chr4 80130704 80130740 -122197607 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr4 80131842 80131874 -122196473 + AT_rich Low_complexity Low_complexity 1 32 0 1999 157 0 3 chr4 80131910 80132204 -122196143 - AluJb SINE Alu -19 293 1 476 158 97 9 chr4 80132321 80132435 -122195912 + MER96B DNA MER1_type? 56 179 -238 221 158 157 5 chr4 80132440 80132463 -122195884 + L2 LINE L2 3188 3206 -107 180 0 0 0 chr4 80132463 80132483 -122195864 + (CCCTAG)n Simple_repeat Simple_repeat 3 22 0 221 158 157 5 chr4 80132483 80132512 -122195835 + L2 LINE L2 3206 3294 -19 1385 156 90 36 chr4 80132578 80132879 -122195468 + MER33 DNA MER1_type 7 323 -1 474 162 14 0 chr4 80133108 80133182 -122195165 - Tigger5 DNA MER2_type -1 2322 2248 347 221 0 0 chr4 80133197 80133265 -122195082 + Tigger5 DNA MER2_type 2253 2320 -3 420 184 0 26 chr4 80133269 80133345 -122195002 - Tigger5 DNA MER2_type -2249 74 1 4297 187 78 14 chr4 80133464 80134275 -122194072 - MER21B LTR ERV1 0 863 1 224 179 71 116 chr4 80134437 80134549 -122193798 - MIR SINE MIR -66 196 90 1428 154 46 11 chr4 80135058 80135318 -122193029 + MSTA LTR MaLR 133 401 -27 250 132 38 0 chr4 80135326 80135379 -122192968 + CT-rich Low_complexity Low_complexity 2 56 0 2052 158 0 0 chr4 80135382 80135686 -122192661 - AluSx SINE Alu -6 306 3 3352 141 9 4 chr4 80135728 80136261 -122192086 + MSTA-int LTR MaLR 1 536 -1115 1260 139 23 19 chr4 80136268 80136484 -122191863 + AluJo SINE Alu 86 302 -10 6111 159 77 2 chr4 80136487 80137521 -122190826 + MSTA-int LTR MaLR 540 1651 0 2394 134 91 8 chr4 80137521 80137916 -122190431 + MSTA LTR MaLR 1 428 0 708 265 137 5 chr4 80137922 80138133 -122190214 - MIR SINE MIR 0 262 24 1864 137 22 7 chr4 80138704 80138982 -122189365 + AluJo SINE Alu 1 282 -30 198 0 0 0 chr4 80138987 80139009 -122189338 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 1882 114 70 0 chr4 80139707 80139978 -122188369 + AluSx SINE Alu 1 290 -22 222 312 64 0 chr4 80140279 80140388 -122187959 - MIR SINE MIR -48 214 99 2234 152 23 21 chr4 80140442 80140831 -122187516 + MLT1B LTR MaLR 1 390 0 403 305 29 24 chr4 80140837 80141067 -122187280 + MLT1H LTR MaLR 72 274 -135 339 44 0 0 chr4 80142451 80142496 -122185851 + (TG)n Simple_repeat Simple_repeat 1 45 0 298 308 167 19 chr4 80142668 80142824 -122185523 - MIR SINE MIR -13 249 71 693 155 54 0 chr4 80142903 80143032 -122185315 + MER53 DNA DNA 1 136 -53 328 234 180 0 chr4 80143034 80143145 -122185202 + L1MC4 LINE L1 7823 7953 -89 467 146 42 52 chr4 80143167 80143263 -122185084 + MER53 DNA DNA 95 189 0 186 271 21 0 chr4 80144119 80144167 -122184180 - L2 LINE L2 -6 3266 3218 196 299 15 0 chr4 80144344 80144411 -122183936 + L2 LINE L2 2306 2373 -941 239 269 25 91 chr4 80144436 80144633 -122183714 + L2 LINE L2 2555 2738 -576 272 360 119 37 chr4 80144708 80145086 -122183261 + L2 LINE L2 2864 3272 0 378 247 0 12 chr4 80145516 80145601 -122182746 - L2 LINE L2 -1 3271 3188 2140 113 7 0 chr4 80145865 80146182 -122182165 - AluSx SINE Alu 0 319 1 885 239 172 62 chr4 80146238 80146613 -122181734 - L1ME4a LINE L1 -27 6094 5762 1810 138 60 3 chr4 80146613 80146896 -122181451 - AluSx SINE Alu -13 299 1 885 239 172 62 chr4 80146896 80147165 -122181182 - L1ME4a LINE L1 -359 5762 5379 262 158 24 19 chr4 80148127 80148188 -122180159 + MER5B DNA MER1_type 122 173 -5 1356 156 22 123 chr4 80148494 80148665 -122179682 + L1MA8 LINE L1 5943 6051 -240 1907 152 10 10 chr4 80148665 80148975 -122179372 + AluJo SINE Alu 1 310 -2 1356 156 22 123 chr4 80148975 80149191 -122179156 + L1MA8 LINE L1 6051 6287 -4 679 263 88 66 chr4 80149344 80149578 -122178769 - Charlie8 DNA MER1_type -1924 493 245 2173 148 46 6 chr4 80149578 80149929 -122178418 + MLT1A1 LTR MaLR 1 365 0 679 263 88 66 chr4 80149929 80150090 -122178257 - Charlie8 DNA MER1_type -2172 245 89 195 365 37 37 chr4 80150201 80150308 -122178039 - L2 LINE L2 -4 3268 3162 28 48 0 0 chr4 80150626 80150668 -122177679 + AT_rich Low_complexity Low_complexity 1 42 0 1003 191 100 14 chr4 80150679 80150899 -122177448 + Charlie1 DNA MER1_type 1 239 -2522 493 161 62 36 chr4 80150888 80151000 -122177347 + Charlie1 DNA MER1_type 2616 2730 -31 * 516 275 33 0 chr4 80151013 80151133 -122177214 + L2 LINE L2 3149 3272 0 228 315 63 45 chr4 80151717 80151828 -122176519 - MER5A DNA MER1_type -63 126 14 575 158 45 60 chr4 80152475 80152608 -122175739 + MER94 DNA DNA 3 133 -1 245 351 45 9 chr4 80152652 80152763 -122175584 + MIR3 SINE MIR 65 179 -29 2327 107 0 0 chr4 80152980 80153288 -122175059 - AluSg SINE Alu -2 308 1 409 277 14 43 chr4 80153758 80153899 -122174448 - MIR SINE MIR -32 230 94 222 243 9 135 chr4 80154195 80154306 -122174041 - MIR SINE MIR -75 187 91 912 194 41 0 chr4 80154704 80154874 -122173473 - MER69A DNA AcHobo 0 177 1 376 312 8 11 chr4 80154897 80155032 -122173315 - MIR SINE MIR -62 146 18 333 307 113 22 chr4 80155058 80155289 -122173058 - MIR SINE MIR -8 254 3 296 303 11 11 chr4 80158208 80158297 -122170050 + L2 LINE L2 3222 3310 -3 919 226 115 87 chr4 80158379 80158830 -122169517 - LTR16B LTR ERVL 0 464 1 271 301 53 25 chr4 80158833 80158990 -122169357 - MIR SINE MIR -62 146 4 952 261 196 32 chr4 80159068 80159543 -122168804 + MLT1H1 LTR MaLR 3 555 0 2214 128 94 3 chr4 80160910 80161294 -122167053 + MSTB1 LTR MaLR 1 419 -13 616 123 0 0 chr4 80161631 80161712 -122166635 + AluJ/FLAM SINE Alu 2 82 -230 183 42 0 0 chr4 80162159 80162183 -122166164 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 605 260 96 24 chr4 80162462 80162670 -122165677 - MIR SINE MIR -27 235 13 180 0 0 0 chr4 80162736 80162756 -122165591 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 1400 134 26 48 chr4 80163685 80163929 -122164418 + L1MB5 LINE L1 5584 5823 -351 1667 166 21 14 chr4 80163929 80164219 -122164128 + AluJo SINE Alu 1 292 -20 1400 134 26 48 chr4 80164219 80164243 -122164104 + L1MB5 LINE L1 5823 5846 -328 2136 116 0 3 chr4 80164920 80165204 -122163143 - AluSq SINE Alu -30 283 1 1628 189 10 10 chr4 80165210 80165512 -122162835 + L1PA16 LINE L1 5864 6165 -1 2237 112 0 3 chr4 80165809 80166112 -122162235 - AluSx SINE Alu -10 302 1 257 191 0 0 chr4 80166321 80166368 -122161979 - MIR SINE MIR -25 237 191 411 263 32 0 chr4 80167136 80167231 -122161116 + MER5A DNA MER1_type 9 106 -83 3363 132 69 20 chr4 80167560 80168151 -122160196 - MER67C LTR ERV1 0 710 91 968 201 6 6 chr4 80168153 80168327 -122160020 - AluSg/x SINE Alu -17 295 122 3352 91 19 80 chr4 80168341 80168882 -122159465 - L1PB1 LINE L1 -1 6150 5643 3877 198 13 4 chr4 80168882 80169638 -122158709 - L1 LINE L1 -1896 4966 4204 3268 119 33 93 chr4 80169640 80170272 -122158075 - LTR14B LTR ERVK 0 608 15 14265 159 45 16 chr4 80170274 80171780 -122156567 - L1PBa LINE L1 -2660 4202 2742 2212 125 3 6 chr4 80171780 80172093 -122156254 + AluSx SINE Alu 1 312 0 14265 159 45 16 chr4 80172093 80174204 -122154143 - L1PBa LINE L1 -4120 2742 478 17064 95 18 19 chr4 80174204 80177157 -122151190 - MER61A-int LTR ERV1 -413 4602 1423 267 31 0 0 chr4 80177157 80177189 -122151158 + (CA)n Simple_repeat Simple_repeat 1 32 0 17064 95 18 19 chr4 80177189 80177293 -122151054 - MER61A-int LTR ERV1 -3592 1423 1320 2460 169 83 32 chr4 80177322 80177919 -122150428 - MER61A-int LTR ERV1 -4510 707 1 1916 149 71 9 chr4 80177919 80178242 -122150105 - MER61A LTR ERV1 0 343 1 1128 231 0 40 chr4 80178242 80178515 -122149832 + AluJo SINE Alu 31 292 -20 2181 100 3 3 chr4 80178620 80178930 -122149417 + AluY SINE Alu 1 310 -1 1440 80 0 0 chr4 80179059 80179246 -122149101 + AluY SINE Alu 124 310 -1 22 0 0 0 chr4 80179263 80179285 -122149062 + AT_rich Low_complexity Low_complexity 1 22 0 432 234 112 48 chr4 80179349 80179537 -122148810 - MIR SINE MIR -32 230 31 1113 210 21 9 chr4 80179686 80179919 -122148428 - MIR SINE MIR -8 254 19 2689 109 37 73 chr4 80180329 80180570 -122147777 - MER4E LTR ERV1 0 766 518 201 94 0 0 chr4 80180570 80180602 -122147745 + (GGGTG)n Simple_repeat Simple_repeat 3 34 0 2689 109 37 73 chr4 80180602 80180785 -122147562 - MER4E LTR ERV1 -248 518 330 2543 74 0 0 chr4 80180785 80181095 -122147252 - AluY SINE Alu -1 310 1 2689 109 37 73 chr4 80181095 80181262 -122147085 - MER4E LTR ERV1 -436 330 9 180 97 0 0 chr4 80181262 80181293 -122147054 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3338 103 2 0 chr4 80181464 80181891 -122146456 - MSTA LTR MaLR 0 428 1 208 343 52 15 chr4 80181909 80182043 -122146304 - L2 LINE L2 -428 2886 2748 184 313 48 12 chr4 80182476 80182559 -122145788 - L2 LINE L2 -927 2387 2302 5212 171 51 5 chr4 80182643 80184053 -122144294 - L1MB3 LINE L1 -2 6417 4941 * 8684 143 60 29 chr4 80184041 80184876 -122143471 - L1MB3 LINE L1 -4730 1654 846 195 69 0 0 chr4 80184876 80184905 -122143442 + (TTG)n Simple_repeat Simple_repeat 1 29 0 8684 143 60 29 chr4 80184905 80185669 -122142678 - L1MB3 LINE L1 -5538 846 6 2402 175 68 2 chr4 80186036 80186436 -122141911 + MSTB LTR MaLR 1 426 0 196 274 20 0 chr4 80186453 80186504 -122141843 - MIR SINE MIR -6 256 205 1421 160 44 28 chr4 80186506 80186825 -122141522 + MER33 DNA MER1_type 1 321 -3 268 286 62 18 chr4 80186827 80186939 -122141408 - MIR SINE MIR -54 208 92 930 209 63 19 chr4 80186952 80187158 -122141189 + MLT1A1 LTR MaLR 151 365 0 6203 60 5 0 chr4 80187663 80188423 -122139924 - L1PA7 LINE L1 -20 6134 5371 2436 88 3 0 chr4 80188431 80188738 -122139609 - AluSg SINE Alu -2 308 1 316 299 132 45 chr4 80188792 80189103 -122139244 - L1MB7 LINE L1 -237 5947 5610 953 261 180 8 chr4 80189110 80189466 -122138881 - LTR33A LTR ERVL -8 515 99 203 177 113 32 chr4 80189766 80189828 -122138519 + L2 LINE L2 3184 3250 -63 1231 212 58 0 chr4 80190440 80190718 -122137629 - L1ME3 LINE L1 0 6162 5869 4988 164 25 23 chr4 80190836 80191811 -122136536 - L1MB4 LINE L1 -6 6174 5195 2542 73 0 0 chr4 80191811 80192114 -122136233 - AluY SINE Alu -8 303 1 4988 164 25 23 chr4 80192114 80192380 -122135967 - L1MB4 LINE L1 -985 5195 4931 212 280 253 0 chr4 80192397 80192472 -122135875 + L2 LINE L2 3210 3303 -10 * 300 274 167 0 chr4 80192452 80192536 -122135811 - L2 LINE L2 -4 3268 3171 186 71 0 0 chr4 80192689 80192717 -122135630 + (TC)n Simple_repeat Simple_repeat 1 28 0 1491 116 0 5 chr4 80192931 80193154 -122135193 + AluSg/x SINE Alu 87 308 0 180 77 0 0 chr4 80193457 80193483 -122134864 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 6209 102 4 20 chr4 80193483 80194474 -122133873 - L1PB1 LINE L1 -38 6113 5136 504 271 69 27 chr4 80194755 80194943 -122133404 - MIR SINE MIR -4 258 63 21 0 0 0 chr4 80195757 80195778 -122132569 + GC_rich Low_complexity Low_complexity 1 21 0 524 282 63 24 chr4 80196316 80196568 -122131779 + MIR SINE MIR 1 262 0 2485 203 97 37 chr4 80196626 80197296 -122131051 - L1MD2 LINE L1 -10 6349 5640 1012 197 0 11 chr4 80197556 80197734 -122130613 + AluJb SINE Alu 135 310 -2 1821 127 9 57 chr4 80197742 80198058 -122130289 + AluJo SINE Alu 12 312 0 235 321 0 0 chr4 80198059 80198115 -122130232 + MIR3 SINE MIR 142 197 -11 340 274 73 49 chr4 80198879 80199043 -122129304 - Charlie8 DNA MER1_type -2141 276 109 944 213 19 32 chr4 80199066 80199282 -122129065 + MIR SINE MIR 8 220 -42 302 286 101 25 chr4 80199295 80199414 -122128933 - Charlie8 DNA MER1_type -2289 128 1 213 308 120 0 chr4 80199414 80199531 -122128816 - MIR SINE MIR -58 150 20 585 264 101 65 chr4 80200891 80201278 -122127069 - MLT1J LTR MaLR -109 402 2 698 253 160 39 chr4 80201278 80201825 -122126522 + L2 LINE L2 2646 3298 -15 186 43 0 0 chr4 80201826 80201849 -122126498 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 960 310 118 9 chr4 80202051 80202399 -122125948 - MLT1K LTR MaLR -193 395 10 2706 146 38 0 chr4 80202550 80202976 -122125371 + Ricksha DNA DNA 59 500 -1546 4124 175 13 13 chr4 80202978 80203692 -122124655 + Ricksha DNA DNA 1190 1903 -1343 5042 214 11 5 chr4 80203692 80204799 -122123548 + L1PB4 LINE L1 4218 5331 -815 578 116 81 23 chr4 80204811 80204897 -122123450 + AluJb SINE Alu 205 295 -17 5053 145 13 11 chr4 80204897 80205729 -122122618 + L1PB4 LINE L1 5322 6155 -1 7441 155 37 17 chr4 80205778 80206663 -122121684 + Ricksha DNA DNA 1889 2781 -465 1602 191 3 16 chr4 80206663 80206967 -122121380 - AluJo SINE Alu -12 300 1 7441 155 37 17 chr4 80206967 80207430 -122120917 + Ricksha DNA DNA 2781 3233 -13 894 111 146 29 chr4 80207961 80208132 -122120215 - LTR48 LTR ERV1 -594 193 3 757 202 8 0 chr4 80208137 80208261 -122120086 - FRAM SINE Alu -51 125 1 22 0 0 0 chr4 80208418 80208440 -122119907 + AT_rich Low_complexity Low_complexity 1 22 0 1851 180 0 0 chr4 80208490 80208796 -122119551 - AluSx SINE Alu -6 306 1 540 188 31 10 chr4 80209414 80209510 -122118837 + MER21B LTR ERV1 1 98 -765 529 199 46 66 chr4 80209546 80209697 -122118650 + MER21B LTR ERV1 98 245 -618 2467 268 203 15 chr4 80209769 80211104 -122117243 + L2 LINE L2 1719 3310 -3 358 294 83 78 chr4 80211183 80211462 -122116885 - L2 LINE L2 -222 3050 2758 2743 153 16 40 chr4 80211462 80211965 -122116382 + L1MB7 LINE L1 5675 6165 -19 358 294 83 78 chr4 80211965 80212110 -122116237 - L2 LINE L2 -514 2758 2615 1722 148 26 62 chr4 80213089 80213235 -122115112 + AluJb SINE Alu 2 135 -177 2221 101 3 7 chr4 80213235 80213545 -122114802 + AluSg SINE Alu 1 309 0 1722 148 26 62 chr4 80213545 80213701 -122114646 + AluJb SINE Alu 135 295 -17 1098 299 109 21 chr4 80213940 80214419 -122113928 - MLT1K LTR MaLR -25 563 43 646 249 201 30 chr4 80216239 80216577 -122111770 - Tigger8 DNA MER2_type -32 634 239 498 246 29 7 chr4 80216777 80216915 -122111432 - L1MEc LINE L1 -4636 1760 1620 453 181 9 76 chr4 80216916 80217021 -122111326 - Tigger7 DNA MER2_type 0 2487 2390 * 1466 192 19 4 chr4 80217007 80217278 -122111069 - Tigger7 DNA MER2_type -454 279 5 3913 250 101 17 chr4 80217281 80218190 -122110157 - L1MEc LINE L1 -901 1675 545 1853 152 0 43 chr4 80218190 80218493 -122109854 + AluJo SINE Alu 1 290 -22 3913 250 101 17 chr4 80218493 80219021 -122109326 - L1MEc LINE L1 -2031 545 63 182 233 17 17 chr4 80219117 80219177 -122109170 + L2 LINE L2 2917 2976 -296 248 230 104 104 chr4 80219353 80219488 -122108859 - L2 LINE L2 0 3272 3138 1094 169 27 67 chr4 80219753 80219914 -122108433 + MER20 DNA MER1_type 1 152 -67 306 107 0 0 chr4 80219914 80219970 -122108377 + (CA)n Simple_repeat Simple_repeat 2 57 0 1094 169 27 67 chr4 80219970 80220033 -122108314 + MER20 DNA MER1_type 152 216 -3 1090 264 85 64 chr4 80220038 80220257 -122108090 - L2 LINE L2 -5 3308 3095 201 94 0 0 chr4 80220257 80220289 -122108058 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1836 87 42 0 chr4 80220291 80220532 -122107815 - AluSx SINE Alu -30 282 32 1090 264 85 64 chr4 80220532 80220745 -122107602 - L2 LINE L2 -218 3095 2864 2513 57 0 19 chr4 80221103 80221419 -122106928 + AluY SINE Alu 1 310 -1 661 239 91 20 chr4 80221583 80221780 -122106567 - MIR SINE MIR -46 216 6 21 0 0 0 chr4 80223733 80223754 -122104593 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr4 80225365 80225399 -122102948 + AT_rich Low_complexity Low_complexity 1 34 0 8231 32 5 0 chr4 80225666 80226559 -122101788 - MER11D LTR ERVK 0 897 1 186 43 0 0 chr4 80226785 80226808 -122101539 + (TG)n Simple_repeat Simple_repeat 2 24 0 2478 155 27 0 chr4 80227835 80228242 -122100105 + MSTB1 LTR MaLR 15 432 0 28 0 0 0 chr4 80228338 80228366 -122099981 + AT_rich Low_complexity Low_complexity 1 28 0 834 247 0 0 chr4 80228377 80228531 -122099816 + FRAM SINE Alu 2 155 -21 12347 115 21 16 chr4 80228746 80234956 -122093391 - L1PA8 LINE L1 -4 6483 6 321 277 22 87 chr4 80235001 80235185 -122093162 - LTR67 LTR ERVL -121 436 265 462 333 35 6 chr4 80235791 80235965 -122092382 - ERVL LTR ERVL -385 5379 5201 518 278 96 23 chr4 80236079 80236349 -122091998 - ERVL LTR ERVL -663 5028 4685 473 207 9 35 chr4 80236353 80236469 -122091878 - ERVL LTR ERVL -1298 4466 4354 1164 319 53 16 chr4 80236770 80237349 -122090998 - ERVL LTR ERVL -1394 4260 3660 875 282 15 31 chr4 80237519 80237778 -122090569 + MIR SINE MIR 2 256 -6 841 301 182 0 chr4 80237779 80238158 -122090189 - ERVL LTR ERVL -2301 3463 3016 1201 210 47 0 chr4 80238158 80238415 -122089932 + MER63 DNA MER1_type 792 1060 0 1349 304 72 7 chr4 80238580 80239008 -122089339 - LTR16B LTR ERVL 0 464 9 267 342 26 8 chr4 80239042 80239159 -122089188 - ERVL LTR ERVL -5139 625 507 2320 175 96 70 chr4 80239250 80239280 -122089067 + MLT1F1 LTR MaLR 1 29 -538 2233 94 3 7 chr4 80239280 80239578 -122088769 + AluY SINE Alu 1 297 -14 2320 175 96 70 chr4 80239578 80240100 -122088247 + MLT1F1 LTR MaLR 29 567 0 780 256 85 18 chr4 80240100 80240547 -122087800 + MLT1F1-int LTR MaLR 1 601 -770 409 263 57 164 chr4 80240801 80241551 -122086796 + MLT1F1-int LTR MaLR 701 1370 -1 1109 212 20 0 chr4 80241559 80241762 -122086585 + MLT1F1 LTR MaLR 8 214 -353 536 198 0 74 chr4 80241764 80241885 -122086462 - MER20 DNA MER1_type 0 219 108 253 250 0 0 chr4 80241888 80241936 -122086411 - L1MC/D LINE L1 -2164 5644 5597 336 24 0 0 chr4 80241939 80241980 -122086367 + (CA)n Simple_repeat Simple_repeat 2 42 0 242 163 20 20 chr4 80242001 80242050 -122086297 - L1MC/D LINE L1 -516 5605 5557 24 53 0 0 chr4 80242061 80242099 -122086248 + AT_rich Low_complexity Low_complexity 1 38 0 500 144 93 0 chr4 80242344 80242441 -122085906 - L1 LINE L1 -816 5330 5225 2871 112 97 13 chr4 80242441 80242911 -122085436 + L1MA4A LINE L1 5787 6299 -4 2368 99 0 3 chr4 80243088 80243391 -122084956 + AluSg SINE Alu 1 302 -8 403 263 83 79 chr4 80243603 80243831 -122084516 - L2 LINE L2 0 3272 3044 289 212 30 0 chr4 80244226 80244292 -122084055 + MER5A DNA MER1_type 27 94 -95 393 277 138 54 chr4 80244440 80245350 -122082997 - L1ME3A LINE L1 -233 5937 4914 409 266 59 9 chr4 80245775 80245961 -122082386 + MIR SINE MIR 2 248 -14 615 85 0 0 chr4 80246670 80246752 -122081595 - FLAM_C SINE Alu -32 111 30 26 30 0 0 chr4 80247181 80247214 -122081133 + AT_rich Low_complexity Low_complexity 1 33 0 217 282 213 20 chr4 80247415 80247617 -122080730 + L2 LINE L2 2200 2440 -874 995 154 6 6 chr4 80248109 80248265 -122080082 + MER1B DNA MER1_type 37 192 -105 1206 134 52 5 chr4 80248280 80248474 -122079873 - AluJb SINE Alu -24 288 86 577 240 162 57 chr4 80248656 80249195 -122079152 - L2 LINE L2 0 3313 2658 636 225 0 6 chr4 80249204 80249364 -122078983 - L2 LINE L2 -866 2448 2290 318 250 76 0 chr4 80249586 80249678 -122078669 - L2 LINE L2 -1020 2294 2196 246 165 144 93 chr4 80249716 80249813 -122078534 + MIR SINE MIR 161 262 0 1950 94 0 16 chr4 80251923 80252179 -122076168 + AluSg SINE Alu 47 298 -12 223 300 14 0 chr4 80254035 80254105 -122074242 + (TA)n Simple_repeat Simple_repeat 2 72 0 675 233 110 134 chr4 80255784 80256240 -122072107 - MLT1J2 LTR MaLR 0 450 2 23 0 0 0 chr4 80256323 80256346 -122072001 + AT_rich Low_complexity Low_complexity 1 23 0 256 162 0 59 chr4 80256631 80256699 -122071648 + (TTAAA)n Simple_repeat Simple_repeat 3 66 0 840 154 0 0 chr4 80257452 80257575 -122070772 - FLAM_C SINE Alu -20 123 1 425 278 108 78 chr4 80257777 80258137 -122070210 - L1MC4a LINE L1 -1875 5933 5563 16689 171 32 20 chr4 80258344 80262747 -122065600 + L1PB1 LINE L1 1 4455 -2407 502 174 0 0 chr4 80262748 80262834 -122065513 + L1PB1 LINE L1 4349 4434 -2428 2260 93 0 42 chr4 80262835 80262977 -122065370 + AluSg SINE Alu 2 148 -162 2314 99 0 0 chr4 80262977 80263270 -122065077 + AluY SINE Alu 1 293 -18 2260 93 0 42 chr4 80263270 80263438 -122064909 + AluSg SINE Alu 148 299 -11 222 105 0 0 chr4 80263456 80263494 -122064853 + (TA)n Simple_repeat Simple_repeat 1 38 0 5568 169 32 10 chr4 80263615 80265300 -122063047 + L1PB1 LINE L1 4768 6493 -374 186 0 88 0 chr4 80265345 80265379 -122062968 + (TA)n Simple_repeat Simple_repeat 1 37 0 450 159 14 28 chr4 80265412 80265557 -122062790 + (TA)n Simple_repeat Simple_repeat 2 144 0 2286 101 42 6 chr4 80265557 80265914 -122062433 + L1PB1 LINE L1 6498 6867 0 601 249 56 52 chr4 80266048 80266281 -122062066 + MIR SINE MIR 18 251 -11 200 262 71 63 chr4 80266778 80266904 -122061443 - MIR SINE MIR -60 202 76 2219 105 31 0 chr4 80267954 80268248 -122060099 - AluSp SINE Alu -10 303 1 1874 160 147 5 chr4 80268419 80268813 -122059534 + LTR47A LTR ERVL 3 452 0 306 297 17 25 chr4 80270149 80270267 -122058080 + L1M4 LINE L1 1060 1176 -5366 701 266 66 13 chr4 80270369 80270673 -122057674 + L1M4 LINE L1 1860 2179 -4646 29 28 0 0 chr4 80270752 80270788 -122057559 + AT_rich Low_complexity Low_complexity 1 36 0 286 200 125 17 chr4 80270958 80271078 -122057269 - HAL1b LINE L1 -290 1058 926 1470 113 61 0 chr4 80271114 80271344 -122057003 - Tigger3(Golem) DNA MER2_type -15 3014 2771 678 217 29 0 chr4 80271341 80271479 -122056868 - Tigger3(Golem) DNA MER2_type -2887 142 1 * 394 301 45 65 chr4 80271611 80271810 -122056537 - HAL1b LINE L1 -1150 198 4 583 290 155 43 chr4 80271998 80272224 -122056123 - L2 LINE L2 -1 3312 3113 821 167 0 0 chr4 80272224 80272344 -122056003 - FLAM_C SINE Alu -12 121 2 583 290 155 43 chr4 80272344 80272631 -122055716 - L2 LINE L2 -200 3113 2740 2131 112 3 0 chr4 80273065 80273360 -122054987 + AluY SINE Alu 1 296 -15 1059 164 102 35 chr4 80273501 80273757 -122054590 + Charlie1b DNA MER1_type 48 320 -203 383 236 142 14 chr4 80273951 80274099 -122054248 + MIR SINE MIR 2 168 -94 21 71 0 0 chr4 80274138 80274180 -122054167 + AT_rich Low_complexity Low_complexity 1 42 0 2125 144 6 0 chr4 80274298 80274631 -122053716 - MER2 DNA MER2_type -10 335 1 429 225 0 0 chr4 80274708 80274788 -122053559 - L2 LINE L2 0 3313 3234 398 305 68 0 chr4 80274937 80275055 -122053292 + L2 LINE L2 3145 3270 -2 190 329 118 12 chr4 80277363 80277448 -122050899 + MIR SINE MIR 52 145 -63 341 294 116 47 chr4 80277980 80278255 -122050092 - L1ME4a LINE L1 -5 6116 5823 218 304 25 25 chr4 80278303 80278382 -122049965 - MIR3 SINE MIR -5 203 125 23 0 0 0 chr4 80278459 80278482 -122049865 + AT_rich Low_complexity Low_complexity 1 23 0 1665 184 27 3 chr4 80279335 80279628 -122048719 - AluJb SINE Alu -6 306 7 780 443 103 0 chr4 80279661 80279934 -122048413 + AluY SINE Alu 1 301 0 246 207 86 17 chr4 80280046 80280104 -122048243 + L2 LINE L2 3183 3244 -69 350 266 161 75 chr4 80280146 80280413 -122047934 - L3 LINE CR1 -1 1576 1287 279 304 26 26 chr4 80280568 80280683 -122047664 - L3 LINE CR1 -607 970 856 1666 168 24 30 chr4 80280717 80281015 -122047332 - AluJb SINE Alu -16 296 1 2271 108 3 3 chr4 80281183 80281488 -122046859 + AluSq SINE Alu 2 306 -7 19528 95 11 12 chr4 80281629 80281962 -122046385 + Charlie3 DNA MER1_type 1 333 -2373 2281 108 0 7 chr4 80281962 80282269 -122046078 + AluSg SINE Alu 1 305 -5 19528 95 11 12 chr4 80282269 80284644 -122043703 + Charlie3 DNA MER1_type 333 2706 0 207 162 0 0 chr4 80285420 80285457 -122042890 + (TATG)n Simple_repeat Simple_repeat 3 39 0 193 341 23 62 chr4 80285486 80285615 -122042732 + MIR3 SINE MIR 78 201 -7 491 262 43 104 chr4 80285724 80285809 -122042538 + MIR SINE MIR 1 90 -172 1279 202 118 4 chr4 80285809 80286071 -122042276 - AluJo SINE Alu -18 294 3 491 262 43 104 chr4 80286071 80286264 -122042083 + MIR SINE MIR 90 262 0 1050 299 94 45 chr4 80286381 80287265 -122041082 + HAL1 LINE L1 57 996 -1511 1978 120 44 0 chr4 80287265 80287565 -122040782 + AluSg SINE Alu 1 312 0 1050 299 94 45 chr4 80287565 80287634 -122040713 + HAL1 LINE L1 996 1060 -1447 3324 82 0 0 chr4 80287636 80288098 -122040249 + L1PA7 LINE L1 4040 4501 -1645 6821 52 3 33 chr4 80289467 80290170 -122038177 + L1PA7 LINE L1 4485 5207 -947 2150 113 0 0 chr4 80290170 80290453 -122037894 + AluSc SINE Alu 9 291 -18 6821 52 3 33 chr4 80290453 80291439 -122036908 + L1PA7 LINE L1 5207 6141 -13 1569 166 83 43 chr4 80291650 80291876 -122036471 - MLT1A1 LTR MaLR -2 363 117 2381 73 0 35 chr4 80291876 80292191 -122036156 + AluY SINE Alu 2 305 -6 1569 166 83 43 chr4 80292191 80292313 -122036034 - MLT1A1 LTR MaLR -248 117 1 477 299 76 7 chr4 80292383 80292875 -122035472 + L1M4c LINE L1 1037 1720 -4815 376 180 79 45 chr4 80292886 80292975 -122035372 - L2 LINE L2 0 3313 3222 1953 157 3 0 chr4 80293117 80293429 -122034918 + AluJb SINE Alu 1 313 0 382 285 22 51 chr4 80293554 80293691 -122034656 - MIR3 SINE MIR -1 207 75 248 306 30 22 chr4 80293774 80293908 -122034439 - HAL1 LINE L1 0 2507 2373 248 323 42 21 chr4 80295071 80295167 -122033180 + L2 LINE L2 2892 2989 -324 23 0 0 0 chr4 80295822 80295845 -122032502 + AT_rich Low_complexity Low_complexity 1 23 0 2359 59 0 14 chr4 80295853 80296162 -122032185 + AluSc SINE Alu 1 305 0 212 265 73 44 chr4 80296719 80296787 -122031560 - L2 LINE L2 -50 3263 3194 249 108 0 0 chr4 80297965 80298002 -122030345 + (A)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr4 80299504 80299525 -122028822 + AT_rich Low_complexity Low_complexity 1 21 0 291 54 0 0 chr4 80299525 80299562 -122028785 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 36 0 0 chr4 80299580 80299608 -122028739 + AT_rich Low_complexity Low_complexity 1 28 0 617 162 9 0 chr4 80300342 80300447 -122027900 - U6 snRNA snRNA -1 106 1 210 290 129 0 chr4 80301340 80301402 -122026945 - L3 LINE CR1 -6 1571 1502 180 0 0 0 chr4 80301723 80301743 -122026604 + (CA)n Simple_repeat Simple_repeat 1 20 0 459 309 213 31 chr4 80301806 80302606 -122025741 + L2 LINE L2 2286 3251 -21 2027 145 121 16 chr4 80302645 80303032 -122025315 + MSTA LTR MaLR 1 428 0 9784 133 9 36 chr4 80303034 80304656 -122023691 + MSTA-int LTR MaLR 3 1580 0 2007 101 118 66 chr4 80304656 80305011 -122023336 + MSTA LTR MaLR 1 381 -47 2444 82 0 0 chr4 80305011 80305314 -122023033 + AluY SINE Alu 1 303 -8 2007 101 118 66 chr4 80305314 80305365 -122022982 + MSTA LTR MaLR 381 428 0 327 132 19 0 chr4 80305531 80305584 -122022763 + MER68 LTR ERV1 158 211 -351 278 293 0 0 chr4 80306345 80306420 -122021927 - L2 LINE L2 -1 3312 3238 242 103 0 0 chr4 80306472 80306511 -122021836 + MER96 DNA MER1_type? 137 175 0 337 291 111 6 chr4 80306512 80306684 -122021663 - L2 LINE L2 -69 3244 3055 2941 145 23 29 chr4 80306684 80307241 -122021106 + MER68 LTR ERV1 1 554 -8 819 265 138 26 chr4 80307250 80307716 -122020631 - L2 LINE L2 -256 3057 2541 1051 194 109 7 chr4 80308101 80308395 -122019952 + MER33 DNA MER1_type 1 324 0 769 207 55 6 chr4 80309454 80309618 -122018729 + MER5A DNA MER1_type 18 189 0 593 152 152 22 chr4 80309635 80309773 -122018574 + MIR SINE MIR 41 196 -66 201 374 16 41 chr4 80310052 80310175 -122018172 - MIR SINE MIR -93 169 50 231 387 42 8 chr4 80310219 80310338 -122018009 - L2 LINE L2 -9 3263 3141 255 31 0 0 chr4 80310356 80310388 -122017959 + (CA)n Simple_repeat Simple_repeat 2 33 0 48 18 0 0 chr4 80310474 80310529 -122017818 + AT_rich Low_complexity Low_complexity 1 55 0 199 320 39 13 chr4 80310664 80310742 -122017605 - MIR SINE MIR -152 110 31 723 169 7 29 chr4 80311622 80311758 -122016589 - FLAM_C SINE Alu 0 133 1 2149 96 0 4 chr4 80312661 80312982 -122015365 + AluSg SINE Alu 1 320 0 255 360 106 21 chr4 80314072 80314450 -122013897 - L2 LINE L2 -411 2903 2494 2368 106 0 0 chr4 80315383 80315684 -122012663 + AluSq SINE Alu 1 301 -12 1604 174 28 21 chr4 80315895 80316177 -122012170 + AluJb SINE Alu 6 289 -23 22 0 0 0 chr4 80316368 80316390 -122011957 + AT_rich Low_complexity Low_complexity 1 22 0 228 241 36 72 chr4 80316395 80316478 -122011869 + MIR SINE MIR 93 172 -90 2432 75 0 0 chr4 80316583 80316878 -122011469 - AluSx SINE Alu -17 295 1 1674 153 4 19 chr4 80317631 80317899 -122010448 + AluJo SINE Alu 33 296 -16 264 323 10 10 chr4 80318214 80318310 -122010037 + MIR3 SINE MIR 100 195 -13 1740 180 3 33 chr4 80319787 80320093 -122008254 - AluJb SINE Alu -15 297 1 332 223 128 0 chr4 80321655 80321749 -122006598 - MER112 DNA MER1_type -124 136 31 337 226 36 66 chr4 80322194 80322331 -122006016 + MER94 DNA DNA 1 133 -1 22 56 0 0 chr4 80322568 80322604 -122005743 + AT_rich Low_complexity Low_complexity 1 36 0 30 45 0 0 chr4 80322835 80322879 -122005468 + AT_rich Low_complexity Low_complexity 1 44 0 349 149 0 30 chr4 80323308 80323375 -122004972 + L1MC5 LINE L1 7837 7901 -60 342 0 0 0 chr4 80323473 80323511 -122004836 + (CA)n Simple_repeat Simple_repeat 2 39 0 1541 118 115 55 chr4 80323511 80323859 -122004488 + THE1C LTR MaLR 7 375 0 8858 126 22 45 chr4 80323861 80325414 -122002933 + THE1C-int LTR MaLR 3 1522 -58 2412 81 0 0 chr4 80325414 80325709 -122002638 - AluY SINE Alu -16 295 1 8858 126 22 45 chr4 80325709 80325752 -122002595 + THE1C-int LTR MaLR 1522 1564 -16 1476 172 154 12 chr4 80325763 80326101 -122002246 + MSTA LTR MaLR 41 426 -2 713 247 65 20 chr4 80326598 80326844 -122001503 - MER46C DNA MER2_type 0 338 82 1566 170 147 20 chr4 80326844 80327239 -122001108 + MER31B LTR ERV1 1 445 -21 273 239 0 0 chr4 80327258 80327325 -122001022 - MER46C DNA MER2_type -252 86 20 22 0 0 0 chr4 80327774 80327796 -122000551 + AT_rich Low_complexity Low_complexity 1 22 0 261 285 118 21 chr4 80328497 80328641 -121999706 + L2 LINE L2 2550 2707 -607 1083 284 90 52 chr4 80328915 80329885 -121998462 + HAL1 LINE L1 762 1768 -739 * 8699 143 55 21 chr4 80329875 80330019 -121998328 + L1M1 LINE L1 16 154 -7411 2519 90 56 3 chr4 80330019 80330375 -121997972 + MER51B LTR ERV1 1 375 -2 8699 143 55 21 chr4 80330375 80331133 -121997214 + L1M1 LINE L1 154 885 -6680 1975 135 0 85 chr4 80331133 80331271 -121997076 + AluSx SINE Alu 1 149 -163 2302 94 3 0 chr4 80331271 80331568 -121996779 + AluSg SINE Alu 1 298 -12 1975 135 0 85 chr4 80331568 80331770 -121996577 + AluSx SINE Alu 149 312 0 8699 143 55 21 chr4 80331770 80333556 -121994791 + L1M1 LINE L1 885 2857 -4708 2096 117 3 42 chr4 80333831 80334138 -121994209 - AluSx SINE Alu -17 295 1 26 50 0 0 chr4 80334187 80334227 -121994120 + AT_rich Low_complexity Low_complexity 1 40 0 2942 168 68 11 chr4 80334315 80334981 -121993366 - L1MB7 LINE L1 -16 6168 5465 2148 120 10 10 chr4 80335082 80335391 -121992956 - AluSx SINE Alu -1 311 3 1823 90 6 117 chr4 80335611 80335944 -121992403 + AluSx SINE Alu 1 296 -16 1342 168 21 12 chr4 80336338 80336552 -121991795 - L1M4 LINE L1 -662 5516 5296 2045 169 0 3 chr4 80336552 80336854 -121991493 - AluJo SINE Alu -11 301 1 1342 168 21 12 chr4 80336854 80337043 -121991304 - L1M4 LINE L1 -882 5296 5110 534 118 69 0 chr4 80337043 80337145 -121991202 - L1MA8 LINE L1 -1 6290 6182 2209 121 0 3 chr4 80337187 80337492 -121990855 + AluSg SINE Alu 1 304 -6 247 263 181 31 chr4 80337576 80337736 -121990611 - L1ME3A LINE L1 -8 6162 5979 2317 87 0 13 chr4 80338578 80338888 -121989459 - AluY SINE Alu -5 306 1 228 237 26 13 chr4 80339159 80339235 -121989112 + (TA)n Simple_repeat Simple_repeat 1 77 0 13739 127 10 23 chr4 80339295 80342609 -121985738 + L1P3 LINE L1 2 3294 -3167 1633 190 35 15 chr4 80342711 80343117 -121985230 + Charlie1b DNA MER1_type 108 521 -2 595 312 96 22 chr4 80343117 80343249 -121985098 - MLT1K LTR MaLR -109 479 360 1836 169 3 13 chr4 80343249 80343557 -121984790 + AluJb SINE Alu 5 309 -3 595 312 96 22 chr4 80343557 80343800 -121984547 - MLT1K LTR MaLR -228 360 74 328 313 100 13 chr4 80344096 80344246 -121984101 + MIR3 SINE MIR 39 201 -7 1504 88 56 0 chr4 80344493 80344744 -121983603 - L1MA8 LINE L1 -3 6288 6024 524 261 0 0 chr4 80345779 80345890 -121982457 - MER5B DNA MER1_type 0 178 68 2361 104 49 47 chr4 80346707 80347178 -121981169 + L1MA2 LINE L1 2961 3432 -4133 508 88 38 0 chr4 80347178 80347258 -121981089 + HY4 scRNA scRNA 11 93 0 14444 150 21 17 chr4 80347258 80351437 -121976910 + L1MA2 LINE L1 3413 7608 -115 507 239 126 29 chr4 80353047 80353286 -121975061 - MLT1L LTR MaLR 0 615 354 255 336 73 9 chr4 80353327 80353437 -121974910 - MLT1L LTR MaLR -362 253 137 253 280 167 0 chr4 80353714 80353846 -121974501 + MIR SINE MIR 106 259 -3 607 234 160 23 chr4 80353884 80354140 -121974207 - MLT1J LTR MaLR -16 495 205 343 186 0 124 chr4 80354157 80354286 -121974061 - MER3 DNA MER1_type -1 208 96 267 379 139 18 chr4 80354306 80354586 -121973761 + L2 LINE L2 2958 3271 -1 418 232 74 0 chr4 80354586 80354681 -121973666 + L2 LINE L2 3169 3270 -2 2069 157 63 63 chr4 80354735 80355239 -121973108 - MLT1D LTR MaLR 0 505 2 771 283 41 20 chr4 80355915 80356159 -121972188 - MIR SINE MIR -8 254 6 2539 48 3 16 chr4 80356852 80357162 -121971185 - AluY SINE Alu -5 306 1 2271 112 3 6 chr4 80357478 80357791 -121970556 - AluSp SINE Alu -1 312 1 181 279 103 73 chr4 80357840 80357976 -121970371 + L2 LINE L2 3168 3307 -6 2535 66 0 0 chr4 80358174 80358478 -121969869 - AluY SINE Alu -7 304 1 222 279 0 16 chr4 80358546 80358607 -121969740 + CT-rich Low_complexity Low_complexity 3 62 0 360 275 81 64 chr4 80359098 80359334 -121969013 + L1ME4a LINE L1 5255 5494 -2314 879 204 41 92 chr4 80359439 80359577 -121968770 + MER2 DNA MER2_type 2 145 -200 2220 120 0 7 chr4 80359577 80359878 -121968469 - AluSc SINE Alu -10 299 1 879 204 41 92 chr4 80359878 80360077 -121968270 + MER2 DNA MER2_type 145 322 -23 1566 145 110 61 chr4 80360284 80360711 -121967636 - LTR7 LTR ERV1 -2 448 1 2226 132 37 65 chr4 80360711 80361069 -121967278 + MSTA LTR MaLR 8 374 -54 2346 82 0 0 chr4 80361069 80361363 -121966984 - AluSc SINE Alu -15 294 1 2154 112 7 0 chr4 80361363 80361666 -121966681 - AluY SINE Alu -5 306 1 2226 132 37 65 chr4 80361666 80361739 -121966608 + MSTA LTR MaLR 372 428 0 299 240 87 0 chr4 80361880 80361984 -121966363 + L1ME4a LINE L1 5985 6097 -24 660 125 58 0 chr4 80362027 80362147 -121966200 - L1MB4 LINE L1 -65 6115 5989 340 277 69 63 chr4 80363433 80363592 -121964755 + MIR SINE MIR 67 226 -36 253 163 23 0 chr4 80363878 80363921 -121964426 + MIR SINE MIR 4 47 -215 1722 163 27 85 chr4 80364039 80364290 -121964057 - MLT1B LTR MaLR -2 388 169 1636 168 6 41 chr4 80364290 80364605 -121963742 + AluJb SINE Alu 9 312 0 1722 163 27 85 chr4 80364605 80364765 -121963582 - MLT1B LTR MaLR -221 169 1 229 289 58 29 chr4 80365369 80365473 -121962874 - L2 LINE L2 0 3313 3207 352 314 47 70 chr4 80365773 80366068 -121962279 - L2 LINE L2 -188 3084 2770 23 33 0 0 chr4 80366361 80366391 -121961956 + AT_rich Low_complexity Low_complexity 1 30 0 2093 82 3 69 chr4 80366826 80367144 -121961203 - AluSq SINE Alu -16 297 1 279 250 52 35 chr4 80367264 80367380 -121960967 + MLT1F1-int LTR MaLR 1254 1371 0 504 156 0 0 chr4 80367382 80367459 -121960888 + MLT1F1 LTR MaLR 2 78 -489 2519 248 202 43 chr4 80367505 80368696 -121959651 + L1MC4 LINE L1 5956 6955 -1087 2120 130 3 3 chr4 80368696 80368996 -121959351 + AluSx SINE Alu 1 300 -12 2519 248 202 43 chr4 80368996 80369587 -121958760 + L1MC4 LINE L1 6955 8042 0 1321 113 34 25 chr4 80369590 80369773 -121958574 + L1PA10 LINE L1 5960 6147 -21 180 0 0 0 chr4 80369773 80369793 -121958554 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 1321 113 34 25 chr4 80369793 80369813 -121958534 + L1PA10 LINE L1 6147 6165 -3 4130 41 0 0 chr4 80370415 80370878 -121957469 + L1PA5 LINE L1 5692 6154 0 534 283 0 26 chr4 80371283 80371435 -121956912 + MER5B DNA MER1_type 1 148 -30 257 368 90 0 chr4 80371928 80372094 -121956253 - L2 LINE L2 -2442 872 692 729 232 142 23 chr4 80372583 80372954 -121955393 + LTR33A LTR ERVL 101 504 -19 309 338 13 39 chr4 80372971 80373125 -121955222 - L2 LINE L2 -693 2621 2472 21 82 0 0 chr4 80373705 80373754 -121954593 + AT_rich Low_complexity Low_complexity 1 49 0 204 40 0 0 chr4 80374832 80374857 -121953490 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 849 150 54 0 chr4 80375055 80375202 -121953145 + BC200 scRNA scRNA 2 156 -44 608 284 91 32 chr4 80375207 80375615 -121952732 + HAL1b LINE L1 99 530 -818 949 290 70 37 chr4 80376321 80377370 -121950977 + L1M4 LINE L1 2149 3231 -2915 44 0 0 0 chr4 80378363 80378407 -121949940 + AT_rich Low_complexity Low_complexity 1 44 0 366 118 0 0 chr4 80378407 80378458 -121949889 - MER66A LTR ERV1 -140 338 288 219 69 0 0 chr4 80378476 80378505 -121949842 + (TA)n Simple_repeat Simple_repeat 1 29 0 7145 35 4 0 chr4 80378505 80379343 -121949004 - L1PA4 LINE L1 -7 6148 5308 2376 85 7 0 chr4 80379864 80380171 -121948176 + AluY SINE Alu 3 311 0 1691 169 21 21 chr4 80380502 80380792 -121947555 - AluJb SINE Alu -17 295 6 2391 103 0 0 chr4 80381003 80381304 -121947043 - AluSq SINE Alu -12 301 1 210 394 28 14 chr4 80382238 80382451 -121945896 + L2 LINE L2 2494 2709 -605 315 240 0 27 chr4 80382796 80382871 -121945476 + MIR SINE MIR 48 120 -142 1919 159 7 0 chr4 80383064 80383366 -121944981 + AluJo SINE Alu 1 304 -8 343 280 129 38 chr4 80383576 80383708 -121944639 + MIR3 SINE MIR 1 144 -64 806 183 0 0 chr4 80384275 80384401 -121943946 + FLAM_C SINE Alu 1 126 -17 2010 128 35 0 chr4 80384423 80384711 -121943636 + AluSx SINE Alu 1 298 -14 1964 150 0 3 chr4 80385156 80385449 -121942898 + AluJb SINE Alu 21 312 0 473 321 100 25 chr4 80385466 80385706 -121942641 + L3 LINE CR1 1315 1572 -5 1444 179 131 0 chr4 80385876 80386150 -121942197 - AluJb SINE Alu -2 310 1 2694 78 29 0 chr4 80386485 80386830 -121941517 + THE1A LTR MaLR 1 355 0 11272 97 12 23 chr4 80386830 80387400 -121940947 + THE1A-int LTR MaLR 1 576 -1004 8379 44 42 3 chr4 80387400 80388078 -121940269 + LTR13 LTR ERVK 1 730 -277 194 0 39 0 chr4 80388078 80388104 -121940243 + (TC)n Simple_repeat Simple_repeat 2 28 0 8379 44 42 3 chr4 80388104 80388394 -121939953 + LTR13 LTR ERVK 730 1007 0 11272 97 12 23 chr4 80388394 80389420 -121938927 + THE1A-int LTR MaLR 576 1580 0 766 73 0 0 chr4 80389420 80389516 -121938831 + THE1A LTR MaLR 1 96 -259 * 1219 60 26 0 chr4 80389514 80389665 -121938682 + THE1A LTR MaLR 201 355 0 337 317 93 29 chr4 80389670 80389875 -121938472 - L2 LINE L2 -245 3068 2851 344 256 221 25 chr4 80389951 80390150 -121938197 - L2 LINE L2 -469 2845 2608 848 214 32 0 chr4 80390201 80390388 -121937959 + L1MB7 LINE L1 5982 6174 -10 2780 81 31 14 chr4 80390412 80390770 -121937577 - THE1B LTR MaLR 0 364 1 1863 216 88 31 chr4 80391321 80391799 -121936548 - MLT1D LTR MaLR 0 505 1 23 33 0 0 chr4 80392948 80392978 -121935369 + GC_rich Low_complexity Low_complexity 1 30 0 186 244 0 0 chr4 80394516 80394561 -121933786 - L2 LINE L2 0 3313 3269 7323 56 5 23 chr4 80394603 80396214 -121932133 + SVA Other Other 1 1386 0 570 255 110 31 chr4 80396234 80396489 -121931858 - L2 LINE L2 -83 3230 2956 255 289 108 0 chr4 80396645 80396728 -121931619 - L2 LINE L2 -20 3252 3161 242 311 114 61 chr4 80396757 80396889 -121931458 + MIR3 SINE MIR 9 147 -61 224 235 20 0 chr4 80397381 80397432 -121930915 + L2 LINE L2 3246 3297 -16 490 226 147 49 chr4 80397591 80397795 -121930552 - L2 LINE L2 -5 3308 3085 972 186 130 90 chr4 80397801 80398155 -121930192 - MER87 LTR ERV1 0 541 174 260 254 173 9 chr4 80398298 80398408 -121929939 - L2 LINE L2 -248 3065 2938 2326 74 0 20 chr4 80398590 80398888 -121929459 - AluY SINE Alu -19 292 1 835 147 0 80 chr4 80399002 80399152 -121929195 + FLAM_C SINE Alu 2 139 -4 2165 94 31 3 chr4 80399157 80399443 -121928904 + AluSx SINE Alu 1 294 -18 670 197 87 0 chr4 80399974 80400174 -121928173 - MLT2B2 LTR ERVL -19 496 215 352 207 171 9 chr4 80400189 80400300 -121928047 - L1ME2 LINE L1 -62 6102 5974 586 281 153 37 chr4 80400593 80401023 -121927324 - L2 LINE L2 -61 3252 2776 40 37 0 0 chr4 80403356 80403410 -121924937 + AT_rich Low_complexity Low_complexity 1 54 0 200 214 255 31 chr4 80403576 80403674 -121924673 - L2 LINE L2 -4 3309 3190 1209 273 50 1 chr4 80403709 80404098 -121924249 + LTR16C LTR ERVL 32 489 -2 2781 184 53 12 chr4 80405603 80406173 -121922174 + L1MB7 LINE L1 5528 6120 -64 2164 116 7 0 chr4 80406287 80406581 -121921766 - AluSq SINE Alu -17 296 1 559 230 64 142 chr4 80406703 80406899 -121921448 + L1ME2 LINE L1 5851 6047 -117 244 61 0 0 chr4 80406899 80406932 -121921415 + MER3 DNA MER1_type 17 49 -160 559 230 64 142 chr4 80406932 80407033 -121921314 + L1ME2 LINE L1 6047 6154 -10 1068 183 6 0 chr4 80407172 80407336 -121921011 - FAM SINE Alu -10 165 1 3146 127 6 22 chr4 80407540 80408028 -121920319 - L1MB3 LINE L1 -9 6174 5695 2333 102 0 0 chr4 80408055 80408349 -121919998 - AluSq SINE Alu -19 294 1 3179 206 39 39 chr4 80408366 80408608 -121919739 - L1MB3 LINE L1 -477 5703 5462 1549 159 79 11 chr4 80408608 80408885 -121919462 - AluJb SINE Alu -12 300 5 3179 206 39 39 chr4 80408885 80409382 -121918965 - L1MB3 LINE L1 -718 5462 4966 2244 113 0 0 chr4 80409382 80409675 -121918672 - AluSq SINE Alu -20 293 1 3179 206 39 39 chr4 80409675 80410179 -121918168 - L1MB3 LINE L1 -1214 4966 4460 210 238 0 0 chr4 80410279 80410321 -121918026 - MIR SINE MIR -194 68 27 2352 103 0 3 chr4 80410679 80410989 -121917358 + AluSc SINE Alu 1 309 0 242 207 17 17 chr4 80411938 80411996 -121916351 - MIR SINE MIR -46 216 159 507 208 104 35 chr4 80412019 80412192 -121916155 + MIR SINE MIR 78 262 0 1971 138 3 22 chr4 80412463 80412781 -121915566 + AluSx SINE Alu 1 312 0 1149 133 6 0 chr4 80413009 80413167 -121915180 - AluSg/x SINE Alu -20 290 132 2249 95 0 16 chr4 80413167 80413472 -121914875 - AluY SINE Alu -11 300 1 221 171 0 0 chr4 80413584 80413625 -121914722 + (TA)n Simple_repeat Simple_repeat 1 41 0 35 71 0 0 chr4 80413638 80413708 -121914639 + AT_rich Low_complexity Low_complexity 1 70 0 576 319 25 10 chr4 80413796 80414000 -121914347 - L1MC/D LINE L1 -2084 5724 5518 432 308 81 24 chr4 80414756 80414873 -121913474 + MIR SINE MIR 34 143 -119 1843 169 0 13 chr4 80414873 80415174 -121913173 + AluJb SINE Alu 1 297 -15 432 308 81 24 chr4 80415174 80415267 -121913080 + MIR SINE MIR 143 256 -6 23 0 0 0 chr4 80416253 80416276 -121912071 + AT_rich Low_complexity Low_complexity 1 23 0 1378 293 14 36 chr4 80416485 80416925 -121911422 - LTR16B LTR ERVL 0 464 35 2310 131 133 13 chr4 80417250 80417632 -121910715 - MSTA LTR MaLR 0 428 1 9800 148 10 39 chr4 80417632 80419257 -121909090 - MSTA-int LTR MaLR 0 1580 3 2046 154 148 0 chr4 80419261 80419447 -121908900 - MSTA LTR MaLR -2 426 269 783 66 0 0 chr4 80419447 80419553 -121908794 + (GGGAGA)n Simple_repeat Simple_repeat 3 108 0 2046 154 148 0 chr4 80419553 80419737 -121908610 - MSTA LTR MaLR -159 269 1 16929 82 10 1 chr4 80419865 80422888 -121905459 + L1PA7 LINE L1 3137 6152 -2 1699 174 4 0 chr4 80423024 80423300 -121905047 + AluJo SINE Alu 1 277 -35 351 0 0 0 chr4 80423307 80423346 -121905001 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 31 0 0 0 chr4 80424728 80424759 -121903588 + AT_rich Low_complexity Low_complexity 1 31 0 180 261 22 22 chr4 80424774 80424820 -121903527 + L3b LINE CR1 1280 1325 -258 381 311 39 0 chr4 80425371 80425474 -121902873 - MER91C DNA MER1_type 0 140 34 3148 168 11 28 chr4 80425644 80426214 -121902133 - L1MB7 LINE L1 -2 6182 5623 898 209 99 9 chr4 80427503 80427714 -121900633 - MIR SINE MIR -21 241 12 2775 135 58 47 chr4 80428558 80429145 -121899202 - MER51A LTR ERV1 -9 625 105 982 97 0 15 chr4 80429150 80429284 -121899063 - AluY SINE Alu -179 132 1 937 99 0 0 chr4 80429284 80429405 -121898942 - MER51A LTR ERV1 -513 121 1 180 286 86 0 chr4 80429560 80429630 -121898717 - MIR3 SINE MIR -50 158 83 237 280 112 24 chr4 80429923 80430048 -121898299 - L2 LINE L2 -814 2500 2365 370 170 163 109 chr4 80430234 80430381 -121897966 + MLT1L LTR MaLR 257 411 -204 268 262 60 31 chr4 80430361 80430541 -121897806 + MLT1L LTR MaLR 324 615 0 * 189 363 75 34 chr4 80431340 80431486 -121896861 + MIR3 SINE MIR 47 198 -10 904 152 11 42 chr4 80431648 80431672 -121896675 - MER53 DNA DNA -4 185 162 2397 94 0 10 chr4 80431672 80431979 -121896368 + AluSq SINE Alu 5 308 -5 904 152 11 42 chr4 80431979 80432145 -121896202 - MER53 DNA DNA -27 162 1 2301 101 7 0 chr4 80432429 80432726 -121895621 + AluSq SINE Alu 1 299 -14 180 0 0 0 chr4 80433649 80433669 -121894678 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1430 222 85 33 chr4 80433934 80434358 -121893989 + LTR16A1 LTR ERVL 1 446 -11 219 278 144 21 chr4 80434547 80434644 -121893703 - L2 LINE L2 -2105 1209 1101 384 322 81 87 chr4 80435459 80435791 -121892556 + L2 LINE L2 2941 3270 -2 314 320 29 10 chr4 80435781 80435884 -121892463 + MIR3 SINE MIR 15 119 -89 * 260 230 40 0 chr4 80436049 80436123 -121892224 - MLT1F LTR MaLR 0 542 466 339 203 51 0 chr4 80436123 80436202 -121892145 + L1M4 LINE L1 3108 3190 -2956 431 301 165 38 chr4 80436221 80436310 -121892037 - L2 LINE L2 -337 2977 2901 2358 93 0 0 chr4 80436310 80436601 -121891746 + AluSx SINE Alu 1 291 -21 203 59 0 29 chr4 80436606 80436640 -121891707 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 431 301 165 38 chr4 80436640 80436780 -121891567 - L2 LINE L2 -416 2898 2712 213 121 0 0 chr4 80437085 80437118 -121891229 + (GA)n Simple_repeat Simple_repeat 2 34 0 283 253 44 44 chr4 80437771 80437862 -121890485 - MIR3 SINE MIR -6 202 112 506 245 195 17 chr4 80437903 80438122 -121890225 + MIR SINE MIR 4 262 0 211 300 43 0 chr4 80438436 80438506 -121889841 - L2 LINE L2 -181 3091 3019 641 253 71 6 chr4 80438683 80438853 -121889494 - MIR SINE MIR -60 202 22 300 298 8 0 chr4 80438872 80438993 -121889354 + LTR33 LTR ERVL 1 122 -399 303 247 72 7 chr4 80439032 80439204 -121889143 + LTR33 LTR ERVL 225 430 -91 1313 210 50 78 chr4 80439215 80439553 -121888794 - L1ME LINE L1 -531 5708 5394 1639 157 10 43 chr4 80439553 80439858 -121888489 - AluJo SINE Alu -17 295 1 1313 210 50 78 chr4 80439858 80440064 -121888283 - L1ME LINE L1 -845 5394 5184 332 221 10 96 chr4 80440081 80440185 -121888162 + MER21B LTR ERV1 12 106 -757 2942 199 84 58 chr4 80440234 80440666 -121887681 + MER21B LTR ERV1 50 514 -349 2544 122 109 0 chr4 80440666 80441052 -121887295 + MSTC LTR MaLR 1 428 0 2942 199 84 58 chr4 80441052 80441401 -121886946 + MER21B LTR ERV1 514 852 -11 1988 265 80 22 chr4 80441421 80441908 -121886439 - L1ME LINE L1 -1039 5176 4719 414 0 0 0 chr4 80441908 80441954 -121886393 + (CA)n Simple_repeat Simple_repeat 1 46 0 1988 265 80 22 chr4 80441954 80442197 -121886150 - L1ME LINE L1 -1496 4719 4395 2071 142 0 0 chr4 80442197 80442485 -121885862 - AluSx SINE Alu -24 288 1 1988 265 80 22 chr4 80442485 80442537 -121885810 - L1ME LINE L1 -1820 4395 4347 297 248 40 48 chr4 80442555 80442680 -121885667 - L1ME LINE L1 -2126 4089 3966 2035 129 7 7 chr4 80442920 80443215 -121885132 - AluSq SINE Alu -18 295 1 331 250 22 11 chr4 80443956 80444048 -121884299 + MIR SINE MIR 95 187 -75 404 206 0 49 chr4 80444051 80444153 -121884194 - L1ME LINE L1 -2153 4062 3966 1361 156 78 113 chr4 80444242 80444417 -121883930 - MER2 DNA MER2_type 0 345 165 1715 141 62 31 chr4 80444417 80444708 -121883639 - AluJo SINE Alu -12 300 1 1361 156 78 113 chr4 80444708 80444739 -121883608 - MER2 DNA MER2_type -180 165 134 3348 57 2 10 chr4 80444739 80445146 -121883201 + L1PA7 LINE L1 5750 6153 -1 1361 156 78 113 chr4 80445146 80445284 -121883063 - MER2 DNA MER2_type -211 134 12 1042 229 14 63 chr4 80445546 80445776 -121882571 - L1ME LINE L1 -3913 2483 2276 2315 81 0 10 chr4 80445776 80446084 -121882263 - AluY SINE Alu -6 305 1 1042 229 14 63 chr4 80446084 80446216 -121882131 - L1ME LINE L1 -4120 2276 2139 503 202 0 0 chr4 80447459 80447558 -121880789 - L1PBa LINE L1 -6764 99 1 1726 148 110 61 chr4 80447902 80448329 -121880018 - LTR7 LTR ERV1 -2 448 1 2220 137 45 14 chr4 80448329 80448687 -121879660 + MSTA LTR MaLR 8 376 -52 2063 106 0 0 chr4 80448687 80448961 -121879386 - AluSc SINE Alu -15 294 21 2010 128 35 0 chr4 80449406 80449694 -121878653 - AluSx SINE Alu -14 298 1 806 183 0 0 chr4 80449716 80449842 -121878505 - FLAM_C SINE Alu -17 126 1 1148 165 100 39 chr4 80450137 80450397 -121877950 - Charlie1b DNA MER1_type -200 323 48 2092 125 7 0 chr4 80450538 80450834 -121877513 - AluSp SINE Alu -15 298 1 2382 70 0 35 chr4 80451217 80451531 -121876816 - AluY SINE Alu -7 304 2 1240 159 49 13 chr4 80451531 80451757 -121876590 + MLT1A1 LTR MaLR 130 363 -2 198 0 0 0 chr4 80452082 80452104 -121876243 + (TA)n Simple_repeat Simple_repeat 1 22 0 243 188 0 0 chr4 80453885 80453933 -121874414 + (CA)n Simple_repeat Simple_repeat 1 48 0 773 210 57 136 chr4 80454557 80454831 -121873516 + MIR SINE MIR 4 262 0 573 305 87 13 chr4 80454892 80455190 -121873157 + L3 LINE CR1 1219 1538 -39 249 33 0 0 chr4 80456604 80456634 -121871713 + (CAGG)n Simple_repeat Simple_repeat 1 30 0 596 111 9 0 chr4 80456635 80456743 -121871604 + (GGAA)n Simple_repeat Simple_repeat 2 110 0 279 302 75 9 chr4 80456836 80456942 -121871405 - L2 LINE L2 0 3313 3201 180 111 0 0 chr4 80457982 80458009 -121870338 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 2108 101 0 4 chr4 80459079 80459356 -121868991 + AluSx SINE Alu 27 302 -10 230 284 212 29 chr4 80460555 80460900 -121867447 + L2 LINE L2 1903 2310 -1004 1322 140 0 40 chr4 80461084 80461306 -121867041 - AluSg/x SINE Alu 0 312 100 1768 40 0 0 chr4 80461438 80461636 -121866711 + AluY SINE Alu 93 290 -21 375 274 20 20 chr4 80461943 80462045 -121866302 - L2 LINE L2 -1 3271 3170 1040 169 0 0 chr4 80462332 80462492 -121865855 + AluJb SINE Alu 132 291 -21 1676 173 4 7 chr4 80462512 80462790 -121865557 - AluJo SINE Alu -35 277 1 387 275 50 25 chr4 80463205 80463325 -121865022 - L2 LINE L2 -1 3312 3190 2272 107 0 0 chr4 80463841 80464140 -121864207 + AluSg SINE Alu 2 300 -10 300 282 14 14 chr4 80464829 80464900 -121863447 + L2 LINE L2 3198 3268 -4 327 299 59 29 chr4 80465152 80465356 -121862991 + L2 LINE L2 2740 2949 -365 285 296 20 41 chr4 80465886 80465984 -121862363 + MIR SINE MIR 16 111 -97 438 244 85 28 chr4 80466266 80466442 -121861905 + MIR SINE MIR 31 216 -46 201 154 0 0 chr4 80467039 80467078 -121861269 + A-rich Low_complexity Low_complexity 1 39 0 1599 166 69 0 chr4 80467462 80467752 -121860595 + AluSx SINE Alu 1 310 -2 920 240 102 61 chr4 80468284 80468676 -121859671 + MLT1I LTR MaLR 2 409 0 281 341 74 54 chr4 80468789 80469047 -121859300 + L2 LINE L2 2910 3172 -100 428 281 15 80 chr4 80469274 80469340 -121859007 + MIR SINE MIR 14 83 -179 2139 194 55 32 chr4 80469340 80469834 -121858513 - MLT1D LTR MaLR 0 505 1 428 281 15 80 chr4 80469834 80469960 -121858387 + MIR SINE MIR 83 188 -74 195 298 53 53 chr4 80469967 80470081 -121858266 + MIR SINE MIR 140 253 -9 225 0 0 0 chr4 80470506 80470531 -121857816 + (TG)n Simple_repeat Simple_repeat 1 25 0 36 23 0 0 chr4 80470765 80470808 -121857539 + AT_rich Low_complexity Low_complexity 1 43 0 1744 130 0 0 chr4 80472009 80472255 -121856092 + AluSx SINE Alu 1 246 -66 22 0 0 0 chr4 80472661 80472683 -121855664 + AT_rich Low_complexity Low_complexity 1 22 0 1260 200 118 14 chr4 80473039 80473215 -121855132 - AluJo SINE Alu -3 309 92 2260 123 0 0 chr4 80473215 80473516 -121854831 - AluSx SINE Alu -8 304 4 1260 200 118 14 chr4 80473516 80473619 -121854728 - AluJo SINE Alu -220 92 1 34 42 0 0 chr4 80473691 80473739 -121854608 + AT_rich Low_complexity Low_complexity 1 48 0 3196 156 49 7 chr4 80473796 80474368 -121853979 - L1MB7 LINE L1 -29 6155 5560 2032 117 35 0 chr4 80474838 80475121 -121853226 + AluSx SINE Alu 1 293 -19 2271 76 3 7 chr4 80477243 80477552 -121850795 - AluSq SINE Alu 0 310 3 396 241 0 13 chr4 80477564 80477643 -121850704 - MIR3 SINE MIR -18 190 113 880 266 47 13 chr4 80477866 80478099 -121850248 - MIR SINE MIR -6 256 16 542 300 44 7 chr4 80478134 80478495 -121849852 - L1ME4a LINE L1 -95 6026 5462 527 161 9 0 chr4 80479206 80479318 -121849029 + L1M4 LINE L1 4334 4446 -1700 1629 223 10 49 chr4 80479322 80479697 -121848650 + MLT1A1 LTR MaLR 1 428 0 3786 185 39 46 chr4 80479699 80480609 -121847738 + L1M4 LINE L1 4448 5369 -815 2367 62 0 26 chr4 80480609 80480913 -121847434 + AluY SINE Alu 1 296 -15 3786 185 39 46 chr4 80480913 80481125 -121847222 + L1M4 LINE L1 5369 5581 -603 360 341 45 23 chr4 80482464 80482640 -121845707 + MER91A DNA MER1_type 17 196 0 1208 88 0 6 chr4 80483028 80483209 -121845138 + (CATAG)n Simple_repeat Simple_repeat 1 180 0 474 263 191 0 chr4 80483215 80483367 -121844980 + MIR SINE MIR 38 218 -44 473 117 91 0 chr4 80483381 80483458 -121844889 + MER5A DNA MER1_type 1 84 -105 320 179 0 0 chr4 80483474 80483530 -121844817 + L1MB3 LINE L1 5214 5269 -877 189 0 0 0 chr4 80483743 80483764 -121844583 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1485 179 80 8 chr4 80483766 80484029 -121844318 - AluJo SINE Alu -30 282 1 771 123 9 0 chr4 80485511 80485625 -121842722 - L1MB3 LINE L1 -7 6176 6062 204 67 0 0 chr4 80485700 80485730 -121842617 + (TC)n Simple_repeat Simple_repeat 2 31 0 1664 173 10 20 chr4 80487115 80487416 -121840931 + AluJo SINE Alu 1 298 -14 308 266 136 45 chr4 80487618 80487772 -121840575 - L3 LINE CR1 -33 1544 1377 248 273 15 0 chr4 80488392 80488458 -121839889 - Charlie8 DNA MER1_type -1 2416 2350 2197 83 3 23 chr4 80488477 80488812 -121839535 - AluY SINE Alu 0 311 1 462 204 133 108 chr4 80488848 80488934 -121839413 - Charlie8 DNA MER1_type -65 276 194 1684 87 0 0 chr4 80488934 80489140 -121839207 - L1PA8 LINE L1 -3 6169 5964 462 204 133 108 chr4 80489140 80489293 -121839054 - Charlie8 DNA MER1_type -147 194 31 606 296 237 13 chr4 80490383 80490691 -121837656 + L3 LINE CR1 1197 1573 -4 2608 152 34 47 chr4 80490805 80491312 -121837035 + L1MB3 LINE L1 5683 6182 -1 662 240 197 5 chr4 80491557 80491765 -121836582 + MIR SINE MIR 15 262 0 1793 150 7 17 chr4 80492474 80492768 -121835579 + AluJo SINE Alu 1 291 -21 445 199 40 80 chr4 80492918 80493101 -121835246 - L1MD3 LINE L1 0 8042 7868 1714 188 0 0 chr4 80493850 80494132 -121834215 + AluJb SINE Alu 1 282 -30 187 122 41 0 chr4 80494137 80494186 -121834161 + (TA)n Simple_repeat Simple_repeat 1 51 0 364 191 21 14 chr4 80494201 80494342 -121834005 + (TA)n Simple_repeat Simple_repeat 1 142 0 482 271 9 87 chr4 80494541 80494759 -121833588 + L2 LINE L2 3111 3311 -2 1662 117 3 114 chr4 80494772 80494891 -121833456 - AluSx SINE Alu 0 306 175 2342 113 0 0 chr4 80494891 80495201 -121833146 - AluSx SINE Alu -2 310 1 1662 117 3 114 chr4 80495201 80495422 -121832925 - AluSx SINE Alu -131 175 1 3244 150 29 9 chr4 80495428 80495974 -121832373 - L1MC1 LINE L1 -13 6320 5764 2374 99 0 3 chr4 80496032 80496344 -121832003 - AluY SINE Alu 0 311 1 3373 116 48 2 chr4 80496371 80496871 -121831476 + MER1A DNA MER1_type 6 528 -1 232 172 0 69 chr4 80497401 80497459 -121830888 + (CACCC)n Simple_repeat Simple_repeat 3 56 0 566 295 114 5 chr4 80498003 80498196 -121830151 - MIR SINE MIR -38 224 11 592 243 7 14 chr4 80498611 80498751 -121829596 + MIR SINE MIR 9 147 -115 3162 154 30 26 chr4 80498769 80498851 -121829496 + L1MA9 LINE L1 5722 5802 -510 342 0 0 0 chr4 80498851 80498889 -121829458 + (CA)n Simple_repeat Simple_repeat 2 39 0 3162 154 30 26 chr4 80498889 80499378 -121828969 + L1MA9 LINE L1 5802 6295 -17 409 285 125 14 chr4 80499860 80500004 -121828343 + MIR SINE MIR 31 190 -72 347 163 35 81 chr4 80502435 80502521 -121825826 + MIR SINE MIR 41 122 -140 189 121 0 0 chr4 80502899 80502932 -121825415 + (TAG)n Simple_repeat Simple_repeat 1 33 0 2313 99 0 3 chr4 80503353 80503657 -121824690 + AluSq SINE Alu 1 303 -10 357 329 92 7 chr4 80504630 80504782 -121823565 + MIR SINE MIR 48 212 -50 294 345 12 24 chr4 80505038 80505206 -121823141 + GA-rich Low_complexity Low_complexity 1 166 0 2397 95 0 3 chr4 80506981 80507287 -121821060 + AluSg SINE Alu 1 305 -5 428 180 6 186 chr4 80507490 80507588 -121820759 - MER5B DNA MER1_type -6 172 112 1555 158 100 4 chr4 80507588 80507867 -121820480 - AluJo SINE Alu -6 306 1 428 180 6 186 chr4 80507867 80507929 -121820418 - MER5B DNA MER1_type -66 112 41 1928 119 46 16 chr4 80507939 80508242 -121820105 + AluJo SINE Alu 1 312 0 1668 148 22 11 chr4 80508242 80508508 -121819839 - MER2 DNA MER2_type -73 272 1 942 87 0 0 chr4 80509355 80509470 -121818877 + AluSq/x SINE Alu 2 116 -196 2348 87 0 0 chr4 80509470 80509758 -121818589 + AluY SINE Alu 1 288 -23 432 256 287 16 chr4 80510025 80510283 -121818064 + L2 LINE L2 2973 3300 -13 * 447 265 73 13 chr4 80510275 80510426 -121817921 + MIR SINE MIR 11 170 -92 249 344 156 7 chr4 80510911 80511065 -121817282 + MIR SINE MIR 2 178 -84 257 290 30 40 chr4 80511513 80511613 -121816734 - MIR SINE MIR -90 118 20 267 31 0 0 chr4 80512258 80512290 -121816057 + (CA)n Simple_repeat Simple_repeat 2 33 0 343 291 131 6 chr4 80513213 80513388 -121814959 - MIR SINE MIR -47 215 19 2236 119 3 3 chr4 80514898 80515208 -121813139 + AluSx SINE Alu 1 310 -2 384 184 31 10 chr4 80515292 80515390 -121812957 + MER53 DNA DNA 2 101 -88 378 0 0 0 chr4 80515481 80515523 -121812824 + (TAA)n Simple_repeat Simple_repeat 2 43 0 250 299 104 28 chr4 80516403 80516547 -121811800 - MER5A DNA MER1_type 0 189 35 * 584 256 15 15 chr4 80516423 80516556 -121811791 + MER5A DNA MER1_type 43 175 -14 1888 147 6 10 chr4 80516729 80517042 -121811305 + L1MB2 LINE L1 5808 6119 -52 3310 165 10 20 chr4 80517048 80517642 -121810705 + L1MA2 LINE L1 3745 4334 -1812 594 113 0 0 chr4 80517642 80517722 -121810625 - MADE1 DNA Mariner 0 80 1 3310 165 10 20 chr4 80517722 80517734 -121810613 + L1MA2 LINE L1 4334 4345 -1801 6482 114 11 6 chr4 80517866 80518809 -121809538 + L1MA2 LINE L1 5358 6304 0 44 35 0 0 chr4 80518843 80518901 -121809446 + AT_rich Low_complexity Low_complexity 1 58 0 420 274 59 67 chr4 80520171 80520426 -121807921 + MIR SINE MIR 8 260 -2 287 184 119 46 chr4 80520618 80520727 -121807620 + L1ME2 LINE L1 5937 6053 -111 1290 144 152 56 chr4 80520923 80521193 -121807154 + AluJb SINE Alu 1 296 -16 2440 63 0 0 chr4 80521195 80521481 -121806866 + AluY SINE Alu 1 286 -25 186 43 0 0 chr4 80521485 80521508 -121806839 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 439 206 183 96 chr4 80521549 80521768 -121806579 + MER102a DNA MER1_type 93 330 0 201 231 0 0 chr4 80521913 80521952 -121806395 + L2 LINE L2 3233 3271 -1 726 239 58 66 chr4 80522356 80522452 -121805895 + MIR SINE MIR 2 97 -165 2073 82 96 0 chr4 80522452 80522733 -121805614 - AluSp SINE Alu -5 308 1 726 239 58 66 chr4 80522733 80522879 -121805468 + MIR SINE MIR 97 242 -20 419 39 0 0 chr4 80522940 80522991 -121805356 - L1PA6 LINE L1 -1 6153 6103 556 241 30 55 chr4 80524023 80524222 -121804125 - L2 LINE L2 -18 3295 3102 352 323 50 25 chr4 80524736 80524897 -121803450 - MIR3 SINE MIR -17 191 27 349 284 163 14 chr4 80525433 80525574 -121802773 - MIR SINE MIR -20 242 81 425 252 37 9 chr4 80525700 80525807 -121802540 + MIR SINE MIR 150 259 -3 404 288 200 10 chr4 80526113 80526318 -121802029 - MIR SINE MIR -6 256 13 1182 233 110 11 chr4 80526712 80527077 -121801270 + L2 LINE L2 489 889 -2425 795 127 0 97 chr4 80527078 80527147 -121801200 - L1MB8 LINE L1 0 6178 6133 2114 116 31 0 chr4 80527147 80527440 -121800907 + AluSx SINE Alu 1 302 -10 795 127 0 97 chr4 80527440 80527535 -121800812 - L1MB8 LINE L1 -45 6133 6030 540 186 8 34 chr4 80527546 80527664 -121800683 + L1M1 LINE L1 17 131 -7434 1134 269 85 75 chr4 80527673 80528208 -121800139 + L2 LINE L2 2476 3014 -299 2303 91 0 0 chr4 80528228 80528515 -121799832 - AluSx SINE Alu -25 287 1 280 241 150 38 chr4 80528638 80528771 -121799576 - MIR SINE MIR -11 251 104 277 328 31 16 chr4 80531342 80531470 -121796877 - MIR SINE MIR -121 141 12 3806 175 33 38 chr4 80532158 80532889 -121795458 + MER44D DNA MER2_type 7 605 0 908 57 9 0 chr4 80533021 80533127 -121795220 + U6 snRNA snRNA 1 107 0 2727 42 0 0 chr4 80533127 80533440 -121794907 + L1PA5 LINE L1 5841 6153 -1 352 267 138 0 chr4 80533665 80533781 -121794566 - MIR SINE MIR -12 250 119 21 0 0 0 chr4 80534054 80534075 -121794272 + AT_rich Low_complexity Low_complexity 1 21 0 2311 78 0 29 chr4 80535720 80536026 -121792321 + AluY SINE Alu 1 297 -14 2297 106 0 25 chr4 80536491 80536811 -121791536 + AluSq SINE Alu 1 312 -1 680 147 0 66 chr4 80536883 80537019 -121791328 + FLAM_A SINE Alu 16 142 0 2120 85 0 0 chr4 80537789 80538047 -121790300 - AluSx SINE Alu -54 258 1 2294 102 7 0 chr4 80538959 80539262 -121789085 - AluSx SINE Alu -7 305 1 759 195 23 6 chr4 80539649 80539823 -121788524 + L1MC/D LINE L1 5271 5447 -795 497 284 98 28 chr4 80539958 80540173 -121788174 + MIR SINE MIR 12 241 -21 361 173 0 37 chr4 80540189 80540270 -121788077 - MER116 DNA Mariner -1 79 2 2241 96 7 13 chr4 80540402 80540704 -121787643 + AluSx SINE Alu 1 300 -12 2435 88 3 0 chr4 80545555 80545860 -121782487 + AluSp SINE Alu 1 306 -7 28 0 0 0 chr4 80546879 80546907 -121781440 + AT_rich Low_complexity Low_complexity 1 28 0 1003 285 66 36 chr4 80548190 80548629 -121779718 - L2 LINE L2 -11 3302 2851 349 333 0 0 chr4 80548679 80548787 -121779560 + MIR SINE MIR 154 261 -1 215 254 0 55 chr4 80550002 80550057 -121778290 + L3 LINE CR1 1516 1567 -10 448 271 157 0 chr4 80550422 80550562 -121777785 - MIR SINE MIR -89 173 12 303 250 196 11 chr4 80550676 80550768 -121777579 + L2 LINE L2 3162 3270 -2 854 305 28 0 chr4 80551349 80551598 -121776749 + MIR SINE MIR 7 262 0 1176 308 59 36 chr4 80551716 80552194 -121776153 - MLT1L LTR MaLR -111 504 16 405 211 26 0 chr4 80552451 80552527 -121775820 + Tigger3(Golem) DNA MER2_type 3 80 -2949 1001 177 0 0 chr4 80552634 80552798 -121775549 + AluJb SINE Alu 136 299 -13 527 224 28 0 chr4 80552807 80552914 -121775433 + Tigger3(Golem) DNA MER2_type 2929 3038 0 432 0 0 0 chr4 80552951 80552999 -121775348 + (CA)n Simple_repeat Simple_repeat 2 49 0 243 406 77 27 chr4 80554265 80554400 -121773947 - L2 LINE L2 -7 3265 3138 2445 67 0 3 chr4 80554400 80554700 -121773647 - AluY SINE Alu -12 299 1 243 406 77 27 chr4 80554700 80554901 -121773446 - L2 LINE L2 -134 3138 2912 427 203 164 16 chr4 80554971 80555099 -121773248 + MER91A DNA MER1_type 50 196 0 560 295 73 24 chr4 80555203 80555491 -121772856 - L2 LINE L2 -581 2733 2432 438 250 176 23 chr4 80555996 80556172 -121772175 + MIR SINE MIR 23 225 -37 1565 117 78 46 chr4 80556275 80556557 -121771790 + AluJo SINE Alu 20 310 -2 535 118 13 0 chr4 80557370 80557446 -121770901 + MADE1 DNA Mariner 1 77 -3 1347 132 18 53 chr4 80557550 80557777 -121770570 + MER20 DNA MER1_type 1 219 0 1961 90 11 15 chr4 80557912 80558180 -121770167 - AluSx SINE Alu -45 267 1 21 36 0 0 chr4 80558943 80558971 -121769376 + AT_rich Low_complexity Low_complexity 1 28 0 927 249 80 36 chr4 80559098 80559347 -121769000 + MIR SINE MIR 3 262 0 2186 126 0 0 chr4 80559510 80559819 -121768528 + AluY SINE Alu 1 309 -2 1841 88 17 0 chr4 80559961 80560201 -121768146 - L1PA6 LINE L1 -2 6152 5909 2156 93 55 0 chr4 80560209 80560498 -121767849 - AluSg SINE Alu -5 305 1 189 0 0 0 chr4 80562287 80562308 -121766039 + (TC)n Simple_repeat Simple_repeat 2 22 0 227 161 0 0 chr4 80562324 80562380 -121765967 - L1MC4 LINE L1 -1339 6703 6648 2410 78 0 0 chr4 80562381 80562674 -121765673 - AluSc SINE Alu -6 303 11 343 109 116 0 chr4 80562785 80562873 -121765474 + Alu SINE Alu 1 62 -246 1124 191 0 0 chr4 80563608 80563781 -121764566 - FAM SINE Alu -2 173 1 183 135 135 0 chr4 80564501 80564538 -121763809 - L2 LINE L2 -5 3308 3267 2359 251 96 30 chr4 80564698 80564791 -121763556 - L2 LINE L2 -144 3169 3084 1753 148 0 30 chr4 80564791 80565094 -121763253 - AluJb SINE Alu -18 294 1 2359 251 96 30 chr4 80565094 80565906 -121762441 - L2 LINE L2 -229 3084 2194 451 275 94 7 chr4 80566119 80566257 -121762090 - MIR3 SINE MIR -40 168 19 1979 273 109 43 chr4 80566897 80567141 -121761206 - L2 LINE L2 0 3313 3087 2213 109 3 28 chr4 80567141 80567461 -121760886 - AluSx SINE Alu 0 312 1 1979 273 109 43 chr4 80567461 80568603 -121759744 - L2 LINE L2 -226 3087 1773 248 198 182 58 chr4 80568865 80568986 -121759361 - MIR SINE MIR 0 262 127 1662 124 139 0 chr4 80569037 80569311 -121759036 + AluSx SINE Alu 1 312 0 2367 60 40 3 chr4 80569335 80569635 -121758712 + AluY SINE Alu 1 311 0 331 211 13 40 chr4 80569736 80569812 -121758535 - MIR SINE MIR -186 76 3 22 70 0 0 chr4 80570692 80570735 -121757612 + AT_rich Low_complexity Low_complexity 1 43 0 344 278 0 87 chr4 80570924 80571050 -121757297 - L2 LINE L2 -4 3309 3195 3930 168 3 2 chr4 80572464 80573065 -121755282 + MER6A DNA MER2_type 4 605 0 231 57 0 0 chr4 80574243 80574278 -121754069 + L1MA2 LINE L1 6270 6304 0 1041 171 31 26 chr4 80574310 80574503 -121753844 + AluJo SINE Alu 94 287 -25 279 355 32 0 chr4 80578121 80578214 -121750133 + L2 LINE L2 3121 3216 -56 1828 121 33 46 chr4 80578870 80579177 -121749170 + AluSp SINE Alu 1 303 -10 823 244 58 13 chr4 80579191 80579416 -121748931 - MIR SINE MIR -14 248 14 2170 113 3 7 chr4 80579787 80580087 -121748260 - AluSq SINE Alu -14 299 1 1894 101 15 8 chr4 80580187 80580454 -121747893 - AluSp SINE Alu -4 309 41 708 105 0 0 chr4 80580526 80580631 -121747716 - L1MA6 LINE L1 0 6300 6196 658 226 57 40 chr4 80580866 80581043 -121747304 - MIR SINE MIR -69 193 14 728 161 0 0 chr4 80581703 80581821 -121746526 + Tigger4(Zombi) DNA MER2_type 2614 2731 0 899 336 77 36 chr4 80581847 80582015 -121746332 - L3 LINE CR1 -7 1570 1410 1280 62 0 19 chr4 80582015 80582159 -121746188 + L1PA5 LINE L1 5996 6138 -16 213 65 0 0 chr4 80582159 80582190 -121746157 + (TA)n Simple_repeat Simple_repeat 1 31 0 1280 62 0 19 chr4 80582190 80582206 -121746141 + L1PA5 LINE L1 6138 6153 -1 899 336 77 36 chr4 80582206 80582624 -121745723 - L3 LINE CR1 -167 1410 960 5637 112 21 8 chr4 80582671 80583507 -121744840 + L1MA4A LINE L1 5455 6301 -2 1893 160 0 13 chr4 80583554 80583867 -121744480 + AluJb SINE Alu 1 309 -3 1778 206 0 0 chr4 80583987 80584298 -121744049 + AluJo SINE Alu 1 311 -1 1315 192 88 88 chr4 80585794 80586159 -121742188 - MLT1A2 LTR MaLR -4 370 6 6343 91 23 10 chr4 80586159 80586445 -121741902 + L1MA1 LINE L1 5421 5702 -600 2142 112 3 14 chr4 80586445 80586783 -121741564 - AluSg SINE Alu 0 310 1 6343 91 23 10 chr4 80586783 80587339 -121741008 + L1MA1 LINE L1 5702 6277 -25 408 20 0 0 chr4 80587339 80587388 -121740959 + (TA)n Simple_repeat Simple_repeat 1 49 0 6343 91 23 10 chr4 80587388 80587415 -121740932 + L1MA1 LINE L1 6277 6302 0 186 43 0 0 chr4 80588689 80588712 -121739635 + (TC)n Simple_repeat Simple_repeat 2 24 0 199 114 45 0 chr4 80588749 80588793 -121739554 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 1140 200 14 9 chr4 80589193 80589408 -121738939 - MER20 DNA MER1_type 0 219 4 1695 178 3 14 chr4 80589518 80589810 -121738537 - AluSx SINE Alu -23 289 1 310 265 0 0 chr4 80589820 80589888 -121738459 - L2 LINE L2 -19 3253 3186 225 353 65 7 chr4 80590323 80590462 -121737885 - L2 LINE L2 -460 2854 2708 958 129 0 14 chr4 80590476 80590616 -121737731 - AluJb SINE Alu -89 223 86 360 309 144 10 chr4 80590623 80590817 -121737530 - L2 LINE L2 -639 2675 2456 464 240 8 48 chr4 80590906 80591031 -121737316 - MIR SINE MIR -110 152 33 234 282 173 0 chr4 80592815 80592925 -121735422 + MIR SINE MIR 66 194 -68 2039 101 0 18 chr4 80592964 80593241 -121735106 + AluSq SINE Alu 3 274 -39 291 28 0 0 chr4 80593241 80593277 -121735070 + (TC)n Simple_repeat Simple_repeat 2 37 0 208 213 128 0 chr4 80594074 80594121 -121734226 + MIR SINE MIR 94 146 -62 181 285 236 0 chr4 80594399 80594522 -121733825 + L3b LINE CR1 1182 1333 -250 232 340 51 32 chr4 80594531 80594687 -121733660 - L2 LINE L2 -15 3298 3140 252 59 0 0 chr4 80594735 80594769 -121733578 + (TG)n Simple_repeat Simple_repeat 1 34 0 2210 120 0 0 chr4 80595655 80595954 -121732393 - AluSx SINE Alu -13 299 1 27 0 0 0 chr4 80596531 80596558 -121731789 + AT_rich Low_complexity Low_complexity 1 27 0 2252 117 0 0 chr4 80596558 80596848 -121731499 - AluSx SINE Alu -22 290 1 1707 178 21 0 chr4 80596882 80597169 -121731178 - AluJo SINE Alu -19 293 1 1221 197 56 31 chr4 80597188 80597302 -121731045 - L1ME2 LINE L1 -1 6163 6053 2394 63 3 16 chr4 80597302 80597605 -121730742 - AluY SINE Alu -11 300 2 1221 197 56 31 chr4 80597605 80598045 -121730302 - L1ME2 LINE L1 -111 6053 5551 2195 176 92 104 chr4 80598080 80598712 -121729635 - MLT1E3 LTR MaLR 0 624 1 834 160 0 0 chr4 80598828 80598953 -121729394 + FRAM SINE Alu 21 145 -31 536 102 23 0 chr4 80598953 80599041 -121729306 + (GGGAGA)n Simple_repeat Simple_repeat 5 94 0 571 260 68 61 chr4 80599609 80599653 -121728694 + Charlie8 DNA MER1_type 33 75 -1342 701 186 53 0 chr4 80599653 80599766 -121728581 - FLAM_A SINE Alu -14 119 1 571 260 68 61 chr4 80599766 80600015 -121728332 + Charlie8 DNA MER1_type 75 1417 0 413 169 0 229 chr4 80600508 80600674 -121727673 - MER5B DNA MER1_type -2 176 49 731 120 32 157 chr4 80600696 80600912 -121727435 - L1MB2 LINE L1 -4 6167 5979 866 149 30 0 chr4 80600941 80601075 -121727272 + AluJo SINE Alu 1 138 -174 1309 203 0 32 chr4 80602398 80602649 -121725698 - AluJb SINE Alu -69 243 1 2451 157 4 111 chr4 80602817 80603376 -121724971 + L1MB3 LINE L1 5663 6161 -22 1795 161 30 10 chr4 80603381 80603686 -121724661 - AluJb SINE Alu -1 311 1 2337 66 3 7 chr4 80603763 80604065 -121724282 + AluSc SINE Alu 5 305 -4 2039 108 0 52 chr4 80604352 80604683 -121723664 + AluSx SINE Alu 2 312 0 1985 103 67 11 chr4 80605411 80605693 -121722654 + AluSx SINE Alu 1 298 -14 27 0 0 0 chr4 80605741 80605768 -121722579 + AT_rich Low_complexity Low_complexity 1 27 0 436 298 84 23 chr4 80605951 80606166 -121722181 + L2 LINE L2 2272 2499 -815 2111 202 35 13 chr4 80606188 80606649 -121721698 + L1ME1 LINE L1 5667 6137 -29 1782 172 26 0 chr4 80606744 80607046 -121721301 + AluJb SINE Alu 1 310 -2 534 223 54 23 chr4 80607152 80607282 -121721065 - L2 LINE L2 0 3313 3180 445 309 52 52 chr4 80607278 80607605 -121720742 + L2 LINE L2 2589 2915 -399 * 1468 146 0 53 chr4 80607845 80608091 -121720256 - MER46A DNA MER2_type 0 236 4 2222 73 4 0 chr4 80608649 80608922 -121719425 - AluY SINE Alu -16 295 22 1165 112 24 0 chr4 80609749 80609918 -121718429 - L1MB2 LINE L1 -3 6168 5996 1944 162 0 3 chr4 80609943 80610246 -121718101 - AluJo SINE Alu -10 302 1 1998 117 40 10 chr4 80610574 80610927 -121717420 - AluJb SINE Alu 0 362 1 347 370 0 0 chr4 80611509 80611617 -121716730 - L2 LINE L2 -16 3256 3149 1626 188 7 17 chr4 80611648 80611935 -121716412 + AluJo SINE Alu 1 284 -28 205 151 38 0 chr4 80611943 80611996 -121716351 + (TAGA)n Simple_repeat Simple_repeat 1 55 0 2002 50 0 0 chr4 80612805 80613045 -121715302 + AluY SINE Alu 72 311 0 432 278 70 29 chr4 80613379 80613556 -121714791 + MIR SINE MIR 5 188 -67 2400 88 0 3 chr4 80614727 80615034 -121713313 - AluSq SINE Alu -7 306 1 2400 74 3 0 chr4 80616215 80616511 -121711836 - AluY SINE Alu -14 297 1 531 328 58 17 chr4 80616671 80616912 -121711435 - MIR SINE MIR 0 262 12 228 325 80 46 chr4 80616998 80617235 -121711112 + L2 LINE L2 2656 2900 -414 393 22 0 0 chr4 80617667 80617713 -121710634 + (TG)n Simple_repeat Simple_repeat 2 47 0 262 257 69 30 chr4 80618374 80618475 -121709872 - MIR SINE MIR -65 197 93 260 312 165 0 chr4 80618567 80618676 -121709671 + L2 LINE L2 3138 3264 -8 26 0 0 0 chr4 80619287 80619313 -121709034 + AT_rich Low_complexity Low_complexity 1 26 0 200 210 0 16 chr4 80619584 80619646 -121708701 + CT-rich Low_complexity Low_complexity 4 64 0 309 250 162 7 chr4 80620112 80620248 -121708099 - L1MC4a LINE L1 -1927 5881 5725 1859 86 0 13 chr4 80621337 80621570 -121706777 + MER30 DNA MER1_type 1 230 0 2211 99 24 0 chr4 80621769 80622062 -121706285 + AluSx SINE Alu 1 300 -12 1605 140 50 43 chr4 80622087 80622365 -121705982 - AluJo SINE Alu -19 293 14 23 33 0 0 chr4 80623204 80623234 -121705113 + AT_rich Low_complexity Low_complexity 1 30 0 309 309 104 82 chr4 80625322 80625946 -121702401 - L1M2 LINE L1 -5511 1338 701 273 197 14 0 chr4 80626767 80626838 -121701509 - L1ME4a LINE L1 0 6121 6050 448 287 87 36 chr4 80627238 80627433 -121700914 + L3b LINE CR1 1375 1579 -4 2622 186 51 2 chr4 80628529 80629082 -121699265 + L1ME2 LINE L1 5585 6164 0 339 291 186 10 chr4 80629088 80629287 -121699060 + MIR SINE MIR 29 262 0 2296 91 0 38 chr4 80629439 80629757 -121698590 - AluSc SINE Alu -3 306 1 255 286 125 36 chr4 80630244 80630356 -121697991 - L2 LINE L2 -1 3271 3150 395 254 110 83 chr4 80630614 80630842 -121697505 + MIR SINE MIR 8 241 -21 * 643 232 61 12 chr4 80630841 80631005 -121697342 - MIR SINE MIR -2 260 89 1664 167 6 48 chr4 80632987 80633299 -121695048 - AluJo SINE Alu -13 299 1 527 254 142 0 chr4 80633610 80633779 -121694568 + MIR SINE MIR 14 206 -56 297 219 202 9 chr4 80635172 80635286 -121693061 - MIR SINE MIR -99 163 28 395 264 108 18 chr4 80635461 80635628 -121692719 - MIR3 SINE MIR -11 197 16 369 256 116 70 chr4 80636222 80636394 -121691953 + MIR SINE MIR 5 184 -78 342 333 71 0 chr4 80636648 80636774 -121691573 + L2 LINE L2 3138 3272 0 2181 133 0 13 chr4 80636841 80637157 -121691190 - AluSx SINE Alu 0 312 1 375 239 31 54 chr4 80637498 80637628 -121690719 + MIR SINE MIR 86 212 -50 362 241 187 6 chr4 80638017 80638183 -121690164 - L1ME4a LINE L1 -4 6117 5922 245 305 127 0 chr4 80638343 80638461 -121689886 + MIR SINE MIR 124 256 -6 887 218 51 0 chr4 80638487 80638684 -121689663 - MIR SINE MIR -28 234 28 675 261 161 58 chr4 80640283 80640895 -121687452 - L2 LINE L2 -4 3309 2623 1964 162 3 0 chr4 80641259 80641379 -121686968 + AluJb SINE Alu 1 119 -193 261 0 0 0 chr4 80641379 80641408 -121686939 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1964 162 3 0 chr4 80641408 80641589 -121686758 + AluJb SINE Alu 119 303 -9 2357 103 37 146 chr4 80641971 80642176 -121686171 - Tigger2 DNA MER2_type 0 2718 2492 2058 103 26 0 chr4 80642176 80642484 -121685863 - AluSc SINE Alu 0 315 1 2357 103 37 146 chr4 80642484 80642764 -121685583 - Tigger2 DNA MER2_type -226 2492 1 321 148 49 0 chr4 80642767 80642828 -121685519 - L2 LINE L2 -1 3312 3249 269 222 16 16 chr4 80643386 80643449 -121684898 + MIR SINE MIR 82 144 -118 25 51 0 0 chr4 80643849 80643888 -121684459 + AT_rich Low_complexity Low_complexity 1 39 0 336 212 257 9 chr4 80644744 80644857 -121683490 - MIR SINE MIR -120 142 2 304 221 78 0 chr4 80646870 80646947 -121681400 - MIR SINE MIR -19 243 161 218 310 60 0 chr4 80647024 80647124 -121681223 + MIR SINE MIR 149 254 -8 509 325 80 5 chr4 80647243 80647443 -121680904 + MIR SINE MIR 38 252 -10 1349 167 0 0 chr4 80647547 80647751 -121680596 + AluJb SINE Alu 66 269 -43 6368 133 113 12 chr4 80648813 80649931 -121678416 - Tigger3b DNA MER2_type 0 1231 1 4073 179 63 32 chr4 80650092 80651010 -121677337 - L1MC4a LINE L1 0 7808 6862 4012 110 134 21 chr4 80652938 80653694 -121674653 - L1MCa LINE L1 -4482 1944 1104 616 45 36 126 chr4 80653696 80653807 -121674540 + L1MC1 LINE L1 6233 6333 0 252 0 0 0 chr4 80656224 80656252 -121672095 + (T)n Simple_repeat Simple_repeat 1 28 0 957 178 7 0 chr4 80656802 80656954 -121671393 + FRAM SINE Alu 1 152 -24 3362 85 22 7 chr4 80657039 80657486 -121670861 + L1PA13 LINE L1 5709 6162 -1 570 290 97 41 chr4 80658083 80658424 -121669923 + L2 LINE L2 2833 3192 -121 614 299 113 0 chr4 80658464 80658668 -121669679 + MIR SINE MIR 18 244 -18 657 230 173 16 chr4 80659425 80659673 -121668674 - L1MC4a LINE L1 -1801 6007 5721 242 226 172 0 chr4 80660129 80660222 -121668125 + L2 LINE L2 3119 3227 -86 485 143 41 0 chr4 80660271 80660369 -121667978 - L1MA5A LINE L1 -2 6295 6194 343 312 166 45 chr4 80660521 80661246 -121667101 + L2 LINE L2 1456 2267 -1047 225 0 0 0 chr4 80661356 80661381 -121666966 + (A)n Simple_repeat Simple_repeat 1 25 0 763 180 7 36 chr4 80661390 80661529 -121666818 - FRAM SINE Alu -46 130 1 254 269 15 15 chr4 80662109 80662176 -121666171 + MIR SINE MIR 33 99 -163 2393 94 3 3 chr4 80662425 80662732 -121665615 + AluSg SINE Alu 1 307 -3 1483 121 0 86 chr4 80662742 80662998 -121665349 + AluSx SINE Alu 36 269 -43 2474 86 53 39 chr4 80663056 80663415 -121664932 + THE1B LTR MaLR 1 364 0 531 254 124 59 chr4 80663889 80664138 -121664209 - MIR SINE MIR 0 262 3 480 291 22 22 chr4 80664454 80664588 -121663759 - MIR SINE MIR -57 151 18 504 189 63 18 chr4 80665323 80665434 -121662913 + L1MC4 LINE L1 7924 8039 -3 391 291 29 81 chr4 80666243 80666334 -121662013 - MIR SINE MIR -61 201 107 2430 97 0 0 chr4 80666334 80666642 -121661705 + AluSx SINE Alu 1 308 -4 391 291 29 81 chr4 80666642 80666760 -121661587 - MIR SINE MIR -155 107 3 709 256 145 4 chr4 80667557 80667784 -121660563 + MIR SINE MIR 3 261 -1 256 225 14 14 chr4 80668623 80668694 -121659653 + GA-rich Low_complexity Low_complexity 2 72 0 438 240 20 10 chr4 80668912 80669012 -121659335 - L2 LINE L2 0 3272 3172 353 225 34 0 chr4 80669170 80669259 -121659088 - MER103 DNA DNA -68 98 7 1028 163 6 0 chr4 80669347 80669507 -121658840 - FRAM SINE Alu -4 162 2 650 259 201 40 chr4 80669650 80669984 -121658363 - L2 LINE L2 -138 3175 2789 2460 83 0 0 chr4 80670391 80670692 -121657655 + AluSx SINE Alu 1 301 -11 180 0 0 0 chr4 80670692 80670712 -121657635 + (TA)n Simple_repeat Simple_repeat 2 21 0 231 281 18 53 chr4 80671070 80671184 -121657163 + 7SK RNA RNA 34 143 -50 5704 130 13 20 chr4 80671575 80672493 -121655854 - L1MC1 LINE L1 -16 6317 5406 239 88 0 0 chr4 80672494 80672528 -121655819 - MER4E LTR ERV1 -83 683 650 477 119 164 57 chr4 80672532 80672691 -121655656 - L1MC1 LINE L1 -907 5437 5262 277 250 11 33 chr4 80677215 80677307 -121651040 - MIR SINE MIR -24 238 149 224 395 37 15 chr4 80677697 80677831 -121650516 - L2 LINE L2 -2 3270 3134 579 294 97 21 chr4 80680440 80680514 -121647833 - MIR SINE MIR -3 259 192 2001 148 0 0 chr4 80680514 80680818 -121647529 + AluSx SINE Alu 1 304 0 579 294 97 21 chr4 80680818 80680980 -121647367 - MIR SINE MIR -70 192 4 2147 124 57 6 chr4 80681094 80681425 -121646922 + MER7A DNA MER2_type 1 346 0 2186 84 0 7 chr4 80681597 80681930 -121646417 - AluY SINE Alu 0 331 1 191 340 128 0 chr4 80682674 80682768 -121645579 + MIR SINE MIR 20 125 -137 206 283 0 0 chr4 80682852 80682898 -121645449 + MIR SINE MIR 201 246 -16 216 0 0 0 chr4 80683627 80683651 -121644696 + (T)n Simple_repeat Simple_repeat 1 24 0 1013 8 0 16 chr4 80684047 80684168 -121644179 - L1PA4 LINE L1 0 6155 6037 248 93 0 0 chr4 80685101 80685144 -121643203 + L1MB2 LINE L1 5290 5332 -814 2416 111 8 6 chr4 80685147 80685498 -121642849 + L1PA15 LINE L1 5814 6165 0 4624 126 64 20 chr4 80686459 80687270 -121641077 + L1MB2 LINE L1 5318 6164 -7 235 274 12 24 chr4 80691162 80691246 -121637101 + CT-rich Low_complexity Low_complexity 2 84 0 567 278 28 37 chr4 80691959 80692175 -121636172 - MIR SINE MIR -1 261 48 217 244 33 67 chr4 80692907 80692997 -121635350 - MIR3 SINE MIR -35 173 87 * 238 265 0 29 chr4 80692994 80693062 -121635285 - L2 LINE L2 -2 3270 3205 21 0 0 0 chr4 80693273 80693294 -121635053 + AT_rich Low_complexity Low_complexity 1 21 0 1170 174 27 0 chr4 80695849 80696068 -121632279 - L1PA16 LINE L1 -2 6164 5940 188 341 85 12 chr4 80696321 80696403 -121631944 - MIR SINE MIR -148 114 27 248 170 0 0 chr4 80696688 80696735 -121631612 + L2 LINE L2 3262 3308 -5 465 171 122 0 chr4 80696826 80696908 -121631439 + 5S rRNA rRNA 1 92 -29 378 345 70 53 chr4 80697491 80697848 -121630499 - L2 LINE L2 -13 3259 2897 2177 122 0 10 chr4 80697923 80698235 -121630112 + AluSx SINE Alu 1 309 -3 1094 158 0 0 chr4 80698235 80698400 -121629947 + AluJb SINE Alu 134 298 -14 23 54 0 0 chr4 80698827 80698864 -121629483 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 80698914 80698935 -121629412 + AT_rich Low_complexity Low_complexity 1 21 0 2118 221 111 21 chr4 80699282 80700051 -121628296 - L1MDb LINE L1 -4471 1935 1104 1495 161 8 12 chr4 80700055 80700297 -121628050 + AluJb SINE Alu 3 243 -69 831 220 64 5 chr4 80700862 80701080 -121627267 + MIR SINE MIR 32 262 0 2406 75 7 3 chr4 80702216 80702521 -121625826 + AluSq SINE Alu 1 306 -7 2102 110 3 14 chr4 80703343 80703633 -121624714 - AluSx SINE Alu -25 287 1 180 200 0 0 chr4 80704031 80704071 -121624276 + (TG)n Simple_repeat Simple_repeat 2 41 0 337 317 37 12 chr4 80704531 80704692 -121623655 + MIR SINE MIR 98 262 0 293 250 33 83 chr4 80704704 80704824 -121623523 + MIR SINE MIR 79 192 -70 1946 105 0 4 chr4 80704860 80705107 -121623240 + AluSq SINE Alu 1 246 -67 2072 91 40 44 chr4 80705949 80706245 -121622102 + AluSx SINE Alu 1 295 -17 205 259 106 0 chr4 80706544 80706629 -121621718 - MIR SINE MIR -13 249 156 294 294 22 0 chr4 80706725 80706817 -121621530 - L2 LINE L2 -14 3299 3206 2374 109 0 0 chr4 80706958 80707270 -121621077 - AluSx SINE Alu 0 312 1 248 372 104 26 chr4 80707539 80707886 -121620461 - L2 LINE L2 -1 3271 2898 2302 94 10 0 chr4 80707961 80708258 -121620089 + AluSg SINE Alu 1 300 -10 947 238 168 53 chr4 80708279 80708732 -121619615 - LTR33 LTR ERVL -16 505 1 24 0 0 0 chr4 80709454 80709478 -121618869 + AT_rich Low_complexity Low_complexity 1 24 0 182 80 0 0 chr4 80709576 80709601 -121618746 + (T)n Simple_repeat Simple_repeat 1 25 0 2597 89 3 3 chr4 80709827 80710187 -121618160 - L1PB1 LINE L1 0 6151 5792 198 0 0 0 chr4 80710188 80710210 -121618137 + (TG)n Simple_repeat Simple_repeat 2 23 0 2497 79 39 14 chr4 80710210 80710565 -121617782 + L1P5 LINE L1 5429 5792 -359 453 203 16 8 chr4 80710585 80710708 -121617639 + (CATATA)n Simple_repeat Simple_repeat 3 126 0 5308 162 31 77 chr4 80710708 80712603 -121615744 - L1PB1 LINE L1 -360 5791 4012 28 0 0 0 chr4 80712636 80712664 -121615683 + AT_rich Low_complexity Low_complexity 1 28 0 1017 180 27 0 chr4 80712874 80713057 -121615290 - MER5A DNA MER1_type -1 188 1 2217 117 3 3 chr4 80713089 80713388 -121614959 - AluSx SINE Alu -13 299 1 1868 139 10 17 chr4 80715993 80716294 -121612053 - AluJo SINE Alu -13 299 1 273 277 195 19 chr4 80717823 80717982 -121610365 + MER5A DNA MER1_type 2 188 -1 30 69 0 0 chr4 80718047 80718105 -121610242 + AT_rich Low_complexity Low_complexity 1 58 0 335 267 69 15 chr4 80719295 80719426 -121608921 - LTR41 LTR ERVL -635 138 1 1808 119 0 16 chr4 80719853 80720105 -121608242 - AluJo SINE Alu -62 250 3 24 0 0 0 chr4 80720156 80720180 -121608167 + AT_rich Low_complexity Low_complexity 1 24 0 205 83 0 28 chr4 80720581 80720617 -121607730 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1794 137 0 8 chr4 80720630 80720893 -121607454 + AluSx SINE Alu 21 281 -31 253 0 0 0 chr4 80720893 80720921 -121607426 + (CAAA)n Simple_repeat Simple_repeat 1 140 0 8591 163 45 52 chr4 80721253 80722499 -121605848 + L1MA5 LINE L1 5 1237 -5931 1152 140 112 47 chr4 80722499 80722713 -121605634 + MER30 DNA MER1_type 2 229 -1 8591 163 45 52 chr4 80722713 80723173 -121605174 + L1MA5 LINE L1 1237 1699 -5469 * 10671 168 26 23 chr4 80723141 80723523 -121604824 + L1MA5 LINE L1 3545 3924 -3243 1687 188 6 22 chr4 80723523 80723837 -121604510 + AluJo SINE Alu 1 309 -3 10671 168 26 23 chr4 80723837 80724427 -121603920 + L1MA5 LINE L1 3924 4511 -2656 2428 65 0 19 chr4 80724427 80724737 -121603610 + AluY SINE Alu 1 304 -7 10671 168 26 23 chr4 80724737 80724913 -121603434 + L1MA5 LINE L1 4511 4685 -2482 345 24 0 0 chr4 80724913 80724955 -121603392 + (CA)n Simple_repeat Simple_repeat 2 43 0 10671 168 26 23 chr4 80724955 80725936 -121602411 + L1MA5 LINE L1 4685 5682 -1485 3867 125 17 14 chr4 80725935 80726573 -121601774 + L1MA5 LINE L1 6335 6974 -347 * 336 208 89 10 chr4 80726572 80726673 -121601674 + L1ME2 LINE L1 1034 1142 -5063 * 1960 246 95 27 chr4 80726735 80726783 -121601564 + L1ME2 LINE L1 2085 2128 -4087 2089 123 6 31 chr4 80726783 80727101 -121601246 + AluSx SINE Alu 1 310 -2 1960 246 95 27 chr4 80727101 80727601 -121600746 + L1ME2 LINE L1 2128 2592 -3623 1099 88 0 27 chr4 80727601 80727749 -121600598 + L1PA8 LINE L1 6022 6165 -7 1960 246 95 27 chr4 80727749 80728179 -121600168 + L1ME2 LINE L1 2592 3097 -3118 1097 173 0 56 chr4 80728277 80728474 -121599873 + AluJo SINE Alu 1 186 -126 2004 257 133 24 chr4 80728512 80729167 -121599180 + L1ME2 LINE L1 3155 3737 -2478 2098 145 0 0 chr4 80729167 80729464 -121598883 + AluSx SINE Alu 1 297 -15 2004 257 133 24 chr4 80729464 80729989 -121598358 + L1ME2 LINE L1 3737 5066 -1149 1414 176 54 0 chr4 80729990 80730268 -121598079 - MER39 LTR ERV1 -22 685 393 242 226 43 65 chr4 80730341 80730434 -121597913 - MER39B LTR ERV1 -562 91 1 610 236 87 5 chr4 80730435 80730630 -121597717 + L1ME2 LINE L1 5068 5278 -937 3210 204 49 14 chr4 80730658 80731395 -121596952 + L1ME2 LINE L1 5461 6223 -10 49 52 0 0 chr4 80731606 80731683 -121596664 + AT_rich Low_complexity Low_complexity 1 77 0 228 237 17 0 chr4 80731683 80731742 -121596605 + L1ME2 LINE L1 6155 6214 -19 2204 75 41 0 chr4 80731890 80732184 -121596163 - AluY SINE Alu -5 306 1 1884 168 0 0 chr4 80732722 80733020 -121595327 - AluJo SINE Alu -14 298 1 238 311 194 10 chr4 80733116 80733219 -121595128 - L2 LINE L2 0 3272 3151 573 229 25 0 chr4 80733467 80733585 -121594762 - MER94 DNA DNA -11 123 3 1675 210 38 14 chr4 80734054 80734420 -121593927 - MER57B LTR ERV1 -59 375 1 210 71 0 0 chr4 80734905 80734933 -121593414 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 4972 156 45 7 chr4 80734933 80735877 -121592470 + L1 LINE L1 4147 5125 -1021 249 278 122 0 chr4 80736075 80736165 -121592182 + MIR SINE MIR 113 213 -49 285 261 0 0 chr4 80736238 80736307 -121592040 - L2 LINE L2 -36 3277 3209 23 0 0 0 chr4 80736329 80736352 -121591995 + AT_rich Low_complexity Low_complexity 1 23 0 295 209 55 33 chr4 80740190 80740281 -121588066 + L1MC5 LINE L1 7837 7929 -32 1860 137 7 37 chr4 80740347 80740647 -121587700 + AluSx SINE Alu 1 291 -21 1298 181 153 8 chr4 80740800 80741049 -121587298 - AluJo SINE Alu -16 286 2 27 73 0 0 chr4 80741060 80741115 -121587232 + AT_rich Low_complexity Low_complexity 1 55 0 251 373 55 74 chr4 80741216 80741433 -121586914 - L2 LINE L2 -161 3111 2899 1596 209 69 3 chr4 80741523 80741858 -121586489 + MLT1A1 LTR MaLR 9 365 0 2151 107 56 56 chr4 80741859 80742234 -121586113 - THE1C LTR MaLR 0 375 1 316 240 27 0 chr4 80742261 80742336 -121586011 + MER5A DNA MER1_type 91 167 -22 * 442 216 21 10 chr4 80742272 80742369 -121585978 - MER5A DNA MER1_type -91 98 1 377 225 47 78 chr4 80742533 80742662 -121585685 + MER91B DNA MER1_type 5 129 -61 288 188 0 0 chr4 80742680 80742728 -121585619 + MER91B DNA MER1_type 90 137 -53 1572 215 10 6 chr4 80743015 80743326 -121585021 - AluJo SINE Alu 0 312 1 233 269 15 15 chr4 80743336 80743403 -121584944 - MLT1L LTR MaLR -328 287 221 * 278 267 67 0 chr4 80743379 80743454 -121584893 - MLT1J LTR MaLR -331 180 101 2292 138 109 3 chr4 80743594 80743979 -121584368 - MSTB LTR MaLR 0 426 1 236 282 14 14 chr4 80744071 80744142 -121584205 - L2 LINE L2 0 3272 3202 2218 110 7 3 chr4 80744284 80744593 -121583754 - AluSx SINE Alu -2 310 1 1225 226 59 81 chr4 80744639 80745182 -121583165 - MLT1H LTR MaLR 0 549 19 1923 158 24 0 chr4 80745329 80745626 -121582721 + AluJb SINE Alu 1 304 -8 257 188 50 50 chr4 80745656 80745736 -121582611 + MER112 DNA MER1_type 1 80 -180 1963 123 17 30 chr4 80745761 80746062 -121582285 + AluSx SINE Alu 1 297 -15 400 185 15 0 chr4 80746066 80746131 -121582216 + MER112 DNA MER1_type 188 253 -7 225 281 18 0 chr4 80746390 80746447 -121581900 - L2 LINE L2 -559 2755 2698 1640 157 16 51 chr4 80747560 80747872 -121580475 + AluJb SINE Alu 1 301 -11 370 286 50 37 chr4 80747913 80748074 -121580273 + MIR SINE MIR 2 164 -98 1886 133 4 0 chr4 80748113 80748391 -121579956 - AluSx SINE Alu 0 312 34 608 132 132 26 chr4 80748584 80748698 -121579649 - FLAM_C SINE Alu -5 138 13 6694 132 15 8 chr4 80748724 80749837 -121578510 - L1MA3 LINE L1 0 6305 5184 1071 193 138 44 chr4 80749937 80750272 -121578075 - L1MEc LINE L1 -3455 2760 2379 2287 108 3 0 chr4 80750272 80750569 -121577778 - AluSq SINE Alu -15 298 1 1071 193 138 44 chr4 80750569 80750638 -121577709 - L1MEc LINE L1 -3836 2379 2318 303 119 45 0 chr4 80750648 80750715 -121577632 + CT-rich Low_complexity Low_complexity 1 70 0 1286 146 0 75 chr4 80750715 80750955 -121577392 - AluJb SINE Alu -66 246 25 1103 201 102 51 chr4 80750963 80751150 -121577197 - L1MEc LINE L1 -4027 2369 2193 2386 98 0 0 chr4 80751150 80751455 -121576892 - AluSc SINE Alu -4 305 1 1103 201 102 51 chr4 80751455 80751502 -121576845 - L1MEc LINE L1 -4203 2193 2150 222 62 0 0 chr4 80751502 80751534 -121576813 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 1103 201 102 51 chr4 80751534 80751559 -121576788 - L1MEc LINE L1 -4246 2150 2128 1515 201 0 11 chr4 80751559 80751837 -121576510 - AluJb SINE Alu -37 275 1 1103 201 102 51 chr4 80751837 80752047 -121576300 - L1MEc LINE L1 -4268 2128 1874 576 281 69 48 chr4 80752071 80752253 -121576094 - L1MEc LINE L1 -5426 970 793 2288 123 0 0 chr4 80752253 80752554 -121575793 - AluSx SINE Alu -11 301 1 576 281 69 48 chr4 80752554 80752577 -121575770 - L1MEc LINE L1 -5603 793 772 1970 142 37 0 chr4 80752577 80752751 -121575596 - AluSx SINE Alu -6 306 115 225 0 0 0 chr4 80752751 80752776 -121575571 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1970 142 37 0 chr4 80752776 80752896 -121575451 - AluSx SINE Alu -197 115 1 576 281 69 48 chr4 80752896 80752950 -121575397 - L1MEc LINE L1 -5624 772 721 1510 186 83 7 chr4 80752950 80753240 -121575107 - AluJb SINE Alu 0 312 1 576 281 69 48 chr4 80753240 80753313 -121575034 - L1MEc LINE L1 -5675 721 629 606 91 0 0 chr4 80753546 80753623 -121574724 - Alu SINE Alu -12 297 221 321 130 0 0 chr4 80753623 80753669 -121574678 - AluSq SINE Alu -125 178 133 2115 106 27 0 chr4 80753670 80753841 -121574506 - AluSx SINE Alu -3 309 125 207 0 0 0 chr4 80753841 80753864 -121574483 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2115 106 27 0 chr4 80753864 80753993 -121574354 - AluSx SINE Alu -187 125 1 664 290 90 4 chr4 80754003 80754248 -121574099 - L1MEc LINE L1 -6031 365 100 456 320 64 15 chr4 80754335 80754538 -121573809 - MIR SINE MIR -14 248 36 383 206 133 30 chr4 80754586 80754751 -121573596 - L1ME4a LINE L1 -2 6119 5938 3030 110 21 9 chr4 80754758 80755193 -121573154 + MLT2A2 LTR ERVL 1 493 -22 193 173 154 19 chr4 80755202 80755254 -121573093 - MIR SINE MIR -168 94 36 572 122 8 0 chr4 80755332 80755455 -121572892 + (TA)n Simple_repeat Simple_repeat 1 124 0 313 111 0 0 chr4 80755455 80755500 -121572847 + MLT2A1 LTR ERVL 390 434 -10 8522 8 0 0 chr4 80755617 80757262 -121571085 - L1PA2 LINE L1 0 6155 4511 1508 112 90 72 chr4 80757262 80757324 -121571023 + MER44D DNA MER2_type 56 115 -2376 2461 72 0 7 chr4 80757324 80757628 -121570719 - AluSc SINE Alu -6 303 2 1508 112 90 72 chr4 80757628 80757842 -121570505 + MER44D DNA MER2_type 115 607 -2 24 32 0 0 chr4 80757913 80757944 -121570403 + AT_rich Low_complexity Low_complexity 1 31 0 201 280 27 27 chr4 80759927 80760002 -121568345 - MER5A DNA MER1_type -75 114 40 2099 142 3 6 chr4 80760025 80760336 -121568011 + AluSx SINE Alu 1 310 -2 293 304 71 42 chr4 80760554 80760722 -121567625 + L2 LINE L2 2915 3087 -185 893 282 163 24 chr4 80760974 80761385 -121566962 + MLT1K LTR MaLR 10 477 -111 26 0 0 0 chr4 80762896 80762922 -121565425 + AT_rich Low_complexity Low_complexity 1 26 0 861 174 18 60 chr4 80762922 80763089 -121565258 - FRAM SINE Alu -16 160 1 2018 127 10 13 chr4 80763096 80763396 -121564951 - AluSx SINE Alu 0 312 14 388 318 161 14 chr4 80763517 80763728 -121564619 - MIR SINE MIR 0 262 21 760 120 0 9 chr4 80764969 80765077 -121563270 - FRAM SINE Alu -37 139 33 690 240 152 5 chr4 80765164 80765368 -121562979 - MIR SINE MIR -21 241 8 1131 254 116 18 chr4 80765400 80765848 -121562499 - L1M4 LINE L1 -2735 3411 2920 2525 80 3 0 chr4 80765879 80766191 -121562156 - AluSp SINE Alu 0 313 1 484 185 0 0 chr4 80766224 80766305 -121562042 - AluS SINE Alu -11 301 221 367 104 0 0 chr4 80766405 80766453 -121561894 - L1 LINE L1 -2014 4132 4085 2918 105 20 2 chr4 80766453 80766862 -121561485 + L1PA8 LINE L1 5749 6164 -8 21 0 0 0 chr4 80766862 80766883 -121561464 + AT_rich Low_complexity Low_complexity 1 21 0 13065 163 18 43 chr4 80766883 80767715 -121560632 - L1 LINE L1 -2047 5518 4667 1175 210 0 5 chr4 80767715 80767939 -121560408 - AluJb SINE Alu -9 303 81 13065 163 18 43 chr4 80767939 80770659 -121557688 - L1 LINE L1 -2898 4667 1926 1551 187 13 20 chr4 80770659 80770959 -121557388 + AluJo SINE Alu 3 300 -12 13065 163 18 43 chr4 80770959 80771415 -121556932 - L1 LINE L1 -5639 1926 1460 228 156 0 0 chr4 80771495 80771531 -121556816 - MIR SINE MIR -113 149 115 458 346 42 36 chr4 80772357 80772692 -121555655 + L2 LINE L2 2289 2625 -689 2248 133 8 8 chr4 80772992 80773344 -121555003 - L1MB3 LINE L1 0 6183 5832 1759 176 0 31 chr4 80773348 80773666 -121554681 - AluJo SINE Alu -4 308 1 502 128 0 11 chr4 80773666 80773760 -121554587 - L1MA4A LINE L1 -259 6044 5952 826 229 143 19 chr4 80773986 80774196 -121554151 + MIR SINE MIR 15 250 -12 304 317 20 0 chr4 80774385 80774486 -121553861 - MIR SINE MIR -112 150 48 1260 254 78 29 chr4 80774752 80775201 -121553146 + MLT1J LTR MaLR 3 473 -38 2368 91 0 0 chr4 80775202 80775500 -121552847 + AluSq SINE Alu 1 298 -15 1871 172 0 3 chr4 80776018 80776320 -121552027 + AluJo SINE Alu 3 303 -9 321 89 0 0 chr4 80776666 80776711 -121551636 + (TA)n Simple_repeat Simple_repeat 2 46 0 415 282 154 18 chr4 80777008 80777228 -121551119 - MIR SINE MIR -3 259 10 211 320 107 48 chr4 80777346 80777449 -121550898 + L2 LINE L2 3139 3247 -25 1635 107 0 0 chr4 80777513 80777719 -121550628 - AluSx SINE Alu -104 208 3 643 216 48 6 chr4 80777876 80778043 -121550304 - MER104 DNA MER2_type -4 176 3 1855 177 20 9 chr4 80778043 80778384 -121549963 + L1MB7 LINE L1 5827 6174 -10 658 137 65 40 chr4 80778384 80778508 -121549839 + MER44D DNA MER2_type 9 405 -204 21 0 0 0 chr4 80778508 80778529 -121549818 + AT_rich Low_complexity Low_complexity 1 21 0 328 98 0 0 chr4 80778532 80778583 -121549764 - L1PA2 LINE L1 0 6155 6105 310 51 0 0 chr4 80778683 80778722 -121549625 - MADE1 DNA Mariner -41 39 1 611 261 117 33 chr4 80778723 80779091 -121549256 - L1M4 LINE L1 -1219 4927 4529 244 258 30 0 chr4 80779095 80779161 -121549186 + L1MC4 LINE L1 7838 7905 -137 987 181 5 70 chr4 80779171 80779386 -121548961 + AluJb SINE Alu 100 300 -12 431 176 153 36 chr4 80779387 80779526 -121548821 + L1MC4 LINE L1 7883 7995 0 1896 150 7 10 chr4 80779743 80780043 -121548304 - AluSx SINE Alu -11 301 3 507 249 71 46 chr4 80780458 80780655 -121547692 - L2 LINE L2 0 3313 3112 2264 115 0 10 chr4 80781314 80781628 -121546719 + AluSq SINE Alu 1 311 -2 1996 126 13 20 chr4 80781960 80782262 -121546085 + AluSq SINE Alu 1 300 -13 249 328 47 23 chr4 80782279 80782407 -121545940 + MER5B DNA MER1_type 7 137 -41 223 306 82 20 chr4 80782496 80782594 -121545753 + MER5A DNA MER1_type 45 148 -41 701 182 16 16 chr4 80783136 80783280 -121545067 - MLT1A1 LTR MaLR 0 488 258 275 292 11 22 chr4 80783343 80783432 -121544915 + L2 LINE L2 3189 3276 -37 1155 209 28 16 chr4 80783433 80783686 -121544661 - MLT1A1 LTR MaLR -109 256 1 1150 202 144 0 chr4 80783863 80784303 -121544044 - Charlie1 DNA MER1_type 0 2761 3 788 300 20 16 chr4 80784472 80784725 -121543622 - MIR SINE MIR 0 262 9 1392 217 126 31 chr4 80784985 80785405 -121542942 + MLT1C LTR MaLR 1 460 -7 3258 163 11 18 chr4 80785619 80786173 -121542174 + MER44D DNA MER2_type 1 605 0 365 263 9 35 chr4 80786269 80786383 -121541964 - L2 LINE L2 -14 3299 3189 1054 261 45 26 chr4 80787115 80787467 -121540880 + L1ME4a LINE L1 5479 5837 -284 477 167 36 0 chr4 80787650 80787734 -121540613 - AluJ/FLAM SINE Alu -224 88 2 3430 181 37 41 chr4 80787735 80788379 -121539968 - L1MB7 LINE L1 -355 6327 5682 2395 85 7 0 chr4 80788379 80788686 -121539661 - AluY SINE Alu -2 309 1 3430 181 37 41 chr4 80788686 80788905 -121539442 - L1MB7 LINE L1 -1000 5682 5464 906 256 51 100 chr4 80788905 80789475 -121538872 - MER34 LTR ERV1 0 542 1 3430 181 37 41 chr4 80789475 80789667 -121538680 - L1MB7 LINE L1 -1218 5464 5273 2274 113 0 25 chr4 80789667 80789987 -121538360 - AluSx SINE Alu 0 312 1 3430 181 37 41 chr4 80789987 80790281 -121538066 - L1MB7 LINE L1 -1409 5273 4987 2526 210 67 43 chr4 80790271 80790900 -121537447 - L1MB7 LINE L1 -5873 669 26 * 196 231 0 0 chr4 80790955 80790994 -121537353 + MIR SINE MIR 92 130 -78 2162 137 0 3 chr4 80791002 80791315 -121537032 - AluSx SINE Alu 0 312 1 360 0 0 0 chr4 80791378 80791418 -121536929 + (CA)n Simple_repeat Simple_repeat 2 41 0 317 297 30 40 chr4 80791670 80791771 -121536576 - MIR SINE MIR -126 136 37 277 268 73 37 chr4 80792135 80792299 -121536048 - HAL1b LINE L1 -689 659 490 422 292 0 17 chr4 80792824 80792943 -121535404 - MIR SINE MIR -67 141 53 348 257 0 0 chr4 80793266 80793336 -121535011 + L3 LINE CR1 1507 1576 -1 215 214 0 0 chr4 80793480 80793522 -121534825 + (TG)n Simple_repeat Simple_repeat 2 43 0 2401 64 0 26 chr4 80793545 80793857 -121534490 + AluY SINE Alu 1 304 -7 313 266 32 24 chr4 80793882 80794006 -121534341 - MLT1L LTR MaLR 0 615 491 2722 141 26 5 chr4 80794092 80794511 -121533836 - MSTA LTR MaLR 0 428 1 435 263 173 13 chr4 80794514 80794670 -121533677 + LTR16B LTR ERVL 8 188 -276 872 128 13 6 chr4 80794674 80794830 -121533517 + L1MC4 LINE L1 7696 7852 -190 2079 189 15 37 chr4 80794992 80795104 -121533243 + L1MB7 LINE L1 5721 5834 -350 1798 172 13 0 chr4 80795104 80795412 -121532935 + AluJb SINE Alu 1 312 0 2079 189 15 37 chr4 80795412 80795753 -121532594 + L1MB7 LINE L1 5834 6164 -20 195 231 0 0 chr4 80795970 80796009 -121532338 + L2 LINE L2 3271 3309 -4 1948 134 7 20 chr4 80796195 80796494 -121531853 - AluJo SINE Alu -17 295 1 216 246 48 111 chr4 80796877 80797003 -121531344 - L2 LINE L2 -4 3309 3192 * 606 279 57 49 chr4 80797000 80797244 -121531103 + L2 LINE L2 3032 3277 -36 180 0 0 0 chr4 80798338 80798358 -121529989 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 302 340 35 45 chr4 80798380 80798580 -121529767 + L2 LINE L2 2742 2939 -375 2922 141 59 64 chr4 80798604 80798717 -121529630 - L1MB7 LINE L1 -23 6161 6049 1696 191 3 13 chr4 80798717 80799032 -121529315 + AluJb SINE Alu 1 312 0 2922 141 59 64 chr4 80799032 80799513 -121528834 - L1MB7 LINE L1 -135 6049 5570 304 289 170 74 chr4 80799555 80799825 -121528522 + L2 LINE L2 2973 3268 -4 3930 236 34 56 chr4 80800096 80801234 -121527113 + L1PA12 LINE L1 9 2474 -5110 603 152 18 27 chr4 80801234 80801346 -121527001 + FRAM SINE Alu 56 166 -10 3661 166 22 62 chr4 80801363 80801548 -121526799 + L1PBa LINE L1 6 197 -6666 180 0 0 0 chr4 80801548 80801568 -121526779 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 3661 166 22 62 chr4 80801568 80802889 -121525458 + L1PBa LINE L1 197 1569 -5294 1687 122 13 0 chr4 80802889 80803127 -121525220 + AluSg/x SINE Alu 69 309 -1 3661 166 22 62 chr4 80803127 80803149 -121525198 + L1PBa LINE L1 1569 1590 -5273 1953 97 27 4 chr4 80803149 80803408 -121524939 + AluY SINE Alu 30 294 -17 3661 166 22 62 chr4 80803408 80803743 -121524604 + L1PBa LINE L1 1590 2115 -4748 2080 137 33 3 chr4 80803743 80804079 -121524268 - THE1B LTR MaLR -6 358 13 6853 95 5 3 chr4 80804079 80805116 -121523231 + L1PA11 LINE L1 5136 6174 0 404 255 50 19 chr4 80805123 80805284 -121523063 + L1ME LINE L1 5612 5777 -344 2424 88 0 0 chr4 80805335 80805631 -121522716 + AluSg SINE Alu 1 296 -14 1989 165 48 6 chr4 80805728 80806062 -121522285 - MER7A DNA MER2_type 0 346 1 403 260 69 46 chr4 80806465 80806638 -121521709 - MER5A DNA MER1_type -6 183 7 2059 114 19 35 chr4 80806920 80807237 -121521110 + AluSx SINE Alu 1 312 0 1387 143 5 14 chr4 80808303 80808520 -121519827 + AluJo SINE Alu 84 298 -14 2564 144 78 122 chr4 80808583 80809050 -121519297 - L1MC3 LINE L1 0 8042 7483 921 228 0 28 chr4 80809050 80809230 -121519117 - FAM SINE Alu 0 175 1 2564 144 78 122 chr4 80809230 80809490 -121518857 - L1MC3 LINE L1 -559 7483 7213 317 327 27 0 chr4 80809490 80809600 -121518747 - MLT1F1 LTR MaLR -420 147 35 824 177 34 0 chr4 80809600 80809775 -121518572 - L1MC3 LINE L1 -688 7097 6917 915 194 0 0 chr4 80809825 80809969 -121518378 + FRAM SINE Alu 12 155 -21 1996 99 35 3 chr4 80809993 80810275 -121518072 - AluY SINE Alu -20 291 1 21 36 0 0 chr4 80810342 80810370 -121517977 + AT_rich Low_complexity Low_complexity 1 28 0 598 283 113 15 chr4 80810519 80810855 -121517492 - L1MC3 LINE L1 -1830 5978 5610 6321 113 21 21 chr4 80811161 80811523 -121516824 - L1PB1 LINE L1 -3 6148 5787 387 0 0 0 chr4 80811523 80811566 -121516781 + (TA)n Simple_repeat Simple_repeat 1 43 0 6321 113 21 21 chr4 80811566 80812279 -121516068 - L1PB1 LINE L1 -363 5788 5068 2169 158 39 53 chr4 80812480 80813033 -121515314 + MLT2A2 LTR ERVL 1 554 0 2097 174 174 44 chr4 80813693 80814122 -121514225 + MLT1F1 LTR MaLR 4 507 -60 2325 95 0 0 chr4 80814122 80814416 -121513931 - AluSg SINE Alu -16 294 1 2097 174 174 44 chr4 80814416 80814481 -121513866 + MLT1F1 LTR MaLR 507 562 -5 239 257 27 0 chr4 80814657 80814731 -121513616 + L1ME LINE L1 5532 5607 -514 28 0 0 0 chr4 80815607 80815635 -121512712 + AT_rich Low_complexity Low_complexity 1 28 0 287 320 127 54 chr4 80815900 80816323 -121512024 - L2 LINE L2 -1361 1953 1478 1053 269 88 33 chr4 80816323 80816746 -121511601 - MLT1J1 LTR MaLR 0 446 1 287 320 127 54 chr4 80816746 80816882 -121511465 - L2 LINE L2 -1836 1478 1353 202 330 45 27 chr4 80818092 80818204 -121510143 + L2 LINE L2 3180 3293 -20 222 289 39 0 chr4 80818298 80818350 -121509997 + L2 LINE L2 3133 3186 -86 2097 147 32 0 chr4 80819134 80819482 -121508865 + Tigger1 DNA MER2_type 1899 2257 -161 303 141 0 0 chr4 80819482 80819546 -121508801 + (T)n Simple_repeat Simple_repeat 1 64 0 6393 78 18 38 chr4 80819547 80820519 -121507828 - SVA Other Other -2 1384 433 513 249 139 6 chr4 80820686 80820859 -121507488 + MIR3 SINE MIR 4 199 -9 383 262 74 47 chr4 80821567 80821716 -121506631 + L3 LINE CR1 1420 1572 -5 625 267 173 5 chr4 80821762 80821964 -121506383 - MIR SINE MIR -11 251 16 680 250 152 13 chr4 80822397 80822621 -121505726 - MIR SINE MIR -4 258 4 231 61 0 0 chr4 80822952 80822985 -121505362 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 288 0 0 0 chr4 80822987 80823019 -121505328 + (CA)n Simple_repeat Simple_repeat 1 32 0 810 257 105 37 chr4 80823218 80823554 -121504793 + MLT1I LTR MaLR 33 405 -4 398 287 9 0 chr4 80824265 80824373 -121503974 + L2 LINE L2 2264 2372 -942 193 385 56 21 chr4 80824642 80824876 -121503471 + L2 LINE L2 2429 2670 -644 343 207 61 0 chr4 80825106 80825188 -121503159 + HsTC2 DNA Tc2 1 87 -1811 2456 71 0 3 chr4 80825587 80825897 -121502450 - AluY SINE Alu -2 309 1 293 244 110 12 chr4 80826358 80826440 -121501907 - Charlie8 DNA MER1_type -2324 93 4 284 303 20 20 chr4 80827001 80827100 -121501247 - MIR3 SINE MIR -17 191 93 359 222 28 0 chr4 80827520 80827592 -121500755 + MER116 DNA Mariner 2 75 -5 203 324 0 40 chr4 80829067 80829141 -121499206 + L2 LINE L2 3187 3257 -15 753 284 40 0 chr4 80831101 80831302 -121497045 + MIR SINE MIR 24 232 -30 251 317 62 35 chr4 80831870 80832015 -121496332 - L2 LINE L2 -196 3076 2928 320 222 97 0 chr4 80832092 80832164 -121496183 + MIR SINE MIR 114 192 -70 1782 102 0 4 chr4 80832189 80832425 -121495922 + AluSq SINE Alu 1 235 -78 190 194 0 0 chr4 80837219 80837250 -121491097 - MIR SINE MIR -75 187 157 775 215 47 21 chr4 80837423 80837614 -121490733 + MER3 DNA MER1_type 14 209 0 185 0 40 0 chr4 80837674 80837699 -121490648 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3390 25 0 0 chr4 80837699 80838063 -121490284 - L1PA5 LINE L1 -16 6138 5775 449 117 81 63 chr4 80838074 80838185 -121490162 - L1MC5 LINE L1 -36 7925 7813 2292 104 0 0 chr4 80839048 80839346 -121489001 + AluSx SINE Alu 1 298 -14 26 74 0 0 chr4 80839425 80839479 -121488868 + AT_rich Low_complexity Low_complexity 1 54 0 1862 131 0 10 chr4 80840458 80840749 -121487598 + AluJb SINE Alu 1 288 -24 2013 129 0 0 chr4 80840814 80841093 -121487254 + AluSx SINE Alu 21 299 -13 424 100 0 0 chr4 80841480 80841540 -121486807 + L1MA2 LINE L1 6236 6295 -9 13017 106 15 33 chr4 80844710 80844947 -121483400 + Tigger1 DNA MER2_type 5 245 -2173 2010 132 7 0 chr4 80844947 80845261 -121483086 - AluSx SINE Alu 0 316 1 13017 106 15 33 chr4 80845261 80845563 -121482784 + Tigger1 DNA MER2_type 245 551 -1867 1542 175 25 18 chr4 80845563 80845837 -121482510 + AluJo SINE Alu 6 281 -31 13017 106 15 33 chr4 80845837 80845866 -121482481 + Tigger1 DNA MER2_type 551 579 -1839 204 40 0 0 chr4 80845866 80845891 -121482456 + (GA)n Simple_repeat Simple_repeat 1 25 0 13017 106 15 33 chr4 80845891 80846838 -121481509 + Tigger1 DNA MER2_type 579 1542 -876 1692 164 30 0 chr4 80846838 80847106 -121481241 + AluJo SINE Alu 1 276 -36 740 74 9 0 chr4 80847107 80847215 -121481132 + (GGAA)n Simple_repeat Simple_repeat 2 110 0 13017 106 15 33 chr4 80847215 80847640 -121480707 + Tigger1 DNA MER2_type 1541 1916 -502 2718 32 0 3 chr4 80848010 80848320 -121480027 - AluY SINE Alu -2 309 1 2209 126 142 16 chr4 80851821 80852201 -121476146 + MSTA LTR MaLR 1 428 0 216 213 0 21 chr4 80853410 80853457 -121474890 + GA-rich Low_complexity Low_complexity 3 48 0 750 197 38 33 chr4 80853859 80854042 -121474305 + MER74A LTR ERVL 348 531 -27 189 132 0 0 chr4 80854778 80854816 -121473531 + (TG)n Simple_repeat Simple_repeat 2 39 0 2420 139 19 0 chr4 80855807 80856166 -121472181 + MER47A DNA MER2_type 1 366 0 1352 77 22 0 chr4 80857597 80857778 -121470569 + L1MA3 LINE L1 6121 6305 0 735 195 16 0 chr4 80858226 80858349 -121469998 + AluJo SINE Alu 12 136 -176 26 0 0 0 chr4 80858349 80858375 -121469972 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr4 80858806 80858834 -121469513 + AT_rich Low_complexity Low_complexity 1 28 0 240 298 54 39 chr4 80859077 80859282 -121469065 - LTR16C LTR ERVL -1 490 283 356 107 0 0 chr4 80859572 80859628 -121468719 + AluSc SINE Alu 243 298 -1 2589 216 24 24 chr4 80860298 80860839 -121467508 - MLT1F LTR MaLR -1 541 1 246 245 31 61 chr4 80860839 80860937 -121467410 - MIR SINE MIR -103 159 65 204 163 0 23 chr4 80861565 80861608 -121466739 + (TA)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr4 80861688 80861709 -121466638 + AT_rich Low_complexity Low_complexity 1 21 0 469 246 88 34 chr4 80861807 80862240 -121466107 - L1ME4a LINE L1 -2 6119 5615 1293 194 94 27 chr4 80862793 80863123 -121465224 - MLT1A1 LTR MaLR -13 352 1 768 246 128 33 chr4 80864107 80864412 -121463935 - MLT1K LTR MaLR -107 481 148 317 283 47 9 chr4 80864724 80864830 -121463517 - L2 LINE L2 -25 3288 3179 266 324 115 7 chr4 80864856 80864995 -121463352 - L2 LINE L2 -1 3312 3159 432 0 0 0 chr4 80865540 80865588 -121462759 + (CA)n Simple_repeat Simple_repeat 2 49 0 484 261 81 12 chr4 80865934 80866095 -121462252 - MIR SINE MIR 0 262 91 918 157 8 0 chr4 80866328 80866462 -121461885 + AluSq/x SINE Alu 2 136 -176 1185 58 0 0 chr4 80866462 80866599 -121461748 + AluSq/x SINE Alu 1 137 -176 1832 86 140 18 chr4 80866599 80866878 -121461469 + AluSq SINE Alu 1 313 0 1261 194 6 85 chr4 80866891 80867220 -121461127 + AluJo SINE Alu 5 307 -5 196 258 203 16 chr4 80867415 80867543 -121460804 + L2 LINE L2 2607 2758 -556 323 168 33 0 chr4 80867574 80867646 -121460701 + L1MB8 LINE L1 6059 6131 -47 333 276 145 7 chr4 80867855 80868007 -121460340 - MIR SINE MIR -88 174 2 321 234 121 28 chr4 80868625 80868914 -121459433 - L1ME4a LINE L1 -743 5403 5086 673 243 67 10 chr4 80869383 80869601 -121458746 - MIR SINE MIR 0 262 34 359 244 0 0 chr4 80870291 80870377 -121457970 + MIR SINE MIR 50 135 -127 189 188 42 42 chr4 80870411 80870459 -121457888 + MIR SINE MIR 210 257 -5 454 271 118 14 chr4 80871003 80871147 -121457200 - MIR3 SINE MIR -11 197 39 2073 130 30 0 chr4 80871436 80871735 -121456612 + AluSx SINE Alu 5 312 0 1246 157 73 15 chr4 80872023 80872297 -121456050 - Charlie1 DNA MER1_type -129 2632 2343 270 237 0 17 chr4 80872306 80872365 -121455982 - Charlie1 DNA MER1_type -2702 59 2 239 265 78 66 chr4 80872522 80872688 -121455659 + L1ME3A LINE L1 5924 6091 -79 222 271 104 21 chr4 80873429 80873525 -121454822 - MIR3 SINE MIR -54 154 51 22 0 0 0 chr4 80875134 80875156 -121453191 + GC_rich Low_complexity Low_complexity 1 22 0 337 337 0 0 chr4 80877370 80877462 -121450885 - L3 LINE CR1 -7 1570 1479 449 193 12 12 chr4 80877577 80877660 -121450687 - L2 LINE L2 0 3313 3231 205 186 0 0 chr4 80879355 80879398 -121448949 + T-rich Low_complexity Low_complexity 5 47 0 208 258 10 113 chr4 80879719 80879816 -121448531 - L2 LINE L2 -271 3001 2915 196 330 56 60 chr4 80879950 80880183 -121448164 - L2 LINE L2 -2418 896 665 2164 180 8 11 chr4 80880398 80880760 -121447587 + MLT1A1 LTR MaLR 1 361 -4 2692 165 14 0 chr4 80880946 80881365 -121446982 + MSTB LTR MaLR 1 425 -1 1630 278 105 49 chr4 80881615 80882032 -121446315 - L2 LINE L2 0 3313 2921 545 28 0 14 chr4 80882032 80882104 -121446243 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 1630 278 105 49 chr4 80882104 80882514 -121445833 - L2 LINE L2 -392 2921 2535 2775 123 49 10 chr4 80882514 80882922 -121445425 - MSTA LTR MaLR -4 424 1 1630 278 105 49 chr4 80882922 80883226 -121445121 - L2 LINE L2 -778 2535 2107 1783 165 29 23 chr4 80883552 80883861 -121444486 - MLT1A1 LTR MaLR 0 365 55 541 246 114 12 chr4 80884012 80884179 -121444168 + MIR3 SINE MIR 19 202 -6 641 296 43 26 chr4 80884208 80884438 -121443909 - MIR SINE MIR 0 262 29 197 385 0 0 chr4 80884708 80884786 -121443561 + L2 LINE L2 3018 3095 -177 252 156 22 0 chr4 80884805 80884850 -121443497 - L2 LINE L2 -972 2342 2297 923 262 31 8 chr4 80884960 80885216 -121443131 - MLT1C LTR MaLR 0 467 206 479 208 25 42 chr4 80885247 80885367 -121442980 - MLT1C LTR MaLR -387 118 1 253 275 25 58 chr4 80885407 80885527 -121442820 + L2 LINE L2 2966 3081 -191 360 231 58 0 chr4 80885538 80885642 -121442705 - MIR SINE MIR -21 241 132 262 329 103 28 chr4 80886177 80886390 -121441957 + L2 LINE L2 2512 2740 -574 1998 181 86 0 chr4 80886468 80886804 -121441543 - MLT1A1 LTR MaLR 0 365 1 441 217 26 26 chr4 80886833 80886948 -121441399 - Charlie7 DNA MER1_type -2213 399 285 501 294 53 20 chr4 80886949 80887194 -121441153 + Charlie7 DNA MER1_type 406 658 -1954 582 302 68 92 chr4 80887194 80887555 -121440792 - Tigger3(Golem) DNA MER2_type 0 3038 1 488 126 223 0 chr4 80887570 80887673 -121440674 - MER46B DNA MER2_type -126 110 110 355 224 46 7 chr4 80887680 80887832 -121440515 + (TA)n Simple_repeat Simple_repeat 2 159 0 23 54 0 0 chr4 80887840 80887877 -121440470 + AT_rich Low_complexity Low_complexity 1 37 0 288 77 0 0 chr4 80887894 80887933 -121440414 + (TC)n Simple_repeat Simple_repeat 2 40 0 215 227 67 13 chr4 80888009 80888159 -121440188 + (TA)n Simple_repeat Simple_repeat 1 158 0 23 33 0 0 chr4 80888200 80888230 -121440117 + AT_rich Low_complexity Low_complexity 1 30 0 2597 175 29 21 chr4 80888300 80888326 -121440021 - L1MB8 LINE L1 -141 6037 6013 2076 124 71 6 chr4 80888326 80888664 -121439683 + MER46B DNA MER2_type 2 236 0 2597 175 29 21 chr4 80888664 80889151 -121439196 - L1MB8 LINE L1 -165 6013 5520 361 302 39 40 chr4 80889398 80889593 -121438754 + MER20B DNA MER1_type 17 214 -5 1592 255 63 29 chr4 80889598 80890041 -121438306 + MLT1J LTR MaLR 47 504 -7 214 217 43 14 chr4 80890054 80890123 -121438224 - MIR SINE MIR -27 235 165 672 258 107 26 chr4 80890197 80890430 -121437917 - MIR SINE MIR -3 259 8 3032 81 72 10 chr4 80890983 80891019 -121437328 - MLT2A1 LTR ERVL 0 444 412 225 0 0 0 chr4 80891019 80891044 -121437303 + (CA)n Simple_repeat Simple_repeat 2 26 0 3032 81 72 10 chr4 80891044 80891425 -121436922 - MLT2A1 LTR ERVL -32 412 1 290 319 146 21 chr4 80891470 80891614 -121436733 - L2 LINE L2 -8 3264 3103 2162 121 3 3 chr4 80891768 80892073 -121436274 + AluSx SINE Alu 1 305 -7 934 128 109 13 chr4 80892140 80892296 -121436051 - Tigger1 DNA MER2_type 0 2418 2248 234 0 0 0 chr4 80892301 80892327 -121436020 + (TCTCCC)n Simple_repeat Simple_repeat 5 30 0 4419 56 49 64 chr4 80892333 80892990 -121435357 + SVA Other Other 50 696 -690 645 309 0 0 chr4 80893094 80893246 -121435101 + C-rich Low_complexity Low_complexity 1 152 0 988 278 93 8 chr4 80893791 80894176 -121434171 - LTR16A LTR ERVL 0 450 33 2195 125 0 0 chr4 80894258 80894561 -121433786 - AluSx SINE Alu -9 303 1 7939 150 122 62 chr4 80894576 80895124 -121433223 - L1MC3 LINE L1 0 7785 7271 233 273 15 0 chr4 80895124 80895190 -121433157 - MLT1F1 LTR MaLR -465 102 36 7939 150 122 62 chr4 80895190 80895719 -121432628 - L1MC3 LINE L1 -514 7271 6775 1979 132 5 108 chr4 80895719 80895794 -121432553 - MER2 DNA MER2_type -3 341 260 1809 142 22 54 chr4 80895794 80896111 -121432236 + AluJo SINE Alu 5 311 -1 1979 132 5 108 chr4 80896111 80896414 -121431933 - MER2 DNA MER2_type -84 260 2 7939 150 122 62 chr4 80896414 80897084 -121431263 - L1MC3 LINE L1 -1010 6775 5863 1520 135 46 92 chr4 80897154 80897458 -121430889 - AluJo SINE Alu -22 290 1 233 229 98 0 chr4 80897502 80897563 -121430784 - L1MC3 LINE L1 -495 5626 5560 252 202 85 31 chr4 80897648 80897777 -121430570 - L1P LINE L1 -727 5427 5292 258 323 20 0 chr4 80897829 80897928 -121430419 - L1ME LINE L1 -295 5826 5726 193 239 14 14 chr4 80897938 80898009 -121430338 + CT-rich Low_complexity Low_complexity 2 72 0 360 312 84 19 chr4 80898023 80898071 -121430276 - L1ME LINE L1 -397 5724 5681 1939 139 3 10 chr4 80898071 80898388 -121429959 - AluSx SINE Alu 0 312 1 360 312 84 19 chr4 80898388 80898554 -121429793 - L1ME LINE L1 -440 5681 5496 2022 136 3 13 chr4 80899049 80899351 -121428996 - AluSx SINE Alu -12 300 2 724 284 116 26 chr4 80899770 80900073 -121428274 - LTR16C LTR ERVL -10 481 152 349 278 98 8 chr4 80900225 80900358 -121427989 - MIR SINE MIR -107 155 11 379 339 56 28 chr4 80900401 80900581 -121427766 - MIR3 SINE MIR -8 200 16 1994 220 60 119 chr4 80902196 80902979 -121425368 - MER21B LTR ERV1 -111 752 16 6323 124 57 24 chr4 80903031 80903381 -121424966 - Tigger3b DNA MER2_type -1798 1230 893 203 61 30 0 chr4 80903381 80903414 -121424933 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 6323 124 57 24 chr4 80903414 80904170 -121424177 - Tigger3b DNA MER2_type -2135 893 88 1999 116 0 8 chr4 80904183 80904451 -121423896 + AluSx SINE Alu 1 266 -46 2100 70 4 11 chr4 80904655 80904926 -121423421 - AluSc SINE Alu -40 269 1 537 284 127 38 chr4 80905036 80905429 -121422918 - MLT1L LTR MaLR -19 549 163 2219 73 76 0 chr4 80906050 80906339 -121422008 + AluY SINE Alu 1 311 0 209 250 0 0 chr4 80906550 80906586 -121421761 + MIR SINE MIR 47 82 -180 689 142 0 0 chr4 80906621 80906727 -121421620 - FLAM_C SINE Alu -3 140 35 407 267 122 0 chr4 80906736 80906867 -121421480 + MIR SINE MIR 103 249 -13 2825 216 65 29 chr4 80906967 80907565 -121420782 - L1ME1 LINE L1 -1 6165 5590 1734 182 52 70 chr4 80907565 80908005 -121420342 + MSTB1 LTR MaLR 1 432 0 2825 216 65 29 chr4 80908005 80909070 -121419277 - L1ME1 LINE L1 -576 5590 4360 832 262 77 30 chr4 80909169 80909597 -121418750 + L1MC4a LINE L1 5625 6072 -1736 462 329 110 39 chr4 80909653 80909908 -121418439 + MLT1J LTR MaLR 8 280 -231 2127 129 7 7 chr4 80909960 80910262 -121418085 + AluSx SINE Alu 1 302 -10 250 254 0 17 chr4 80910367 80910426 -121417921 - MIR SINE MIR -135 73 16 21 0 0 0 chr4 80911294 80911315 -121417032 + AT_rich Low_complexity Low_complexity 1 21 0 550 236 43 0 chr4 80911880 80912020 -121416327 - L1ME1 LINE L1 -1838 4308 4163 180 0 0 0 chr4 80912158 80912178 -121416169 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2123 106 0 0 chr4 80912187 80912462 -121415885 - AluSx SINE Alu -37 275 1 951 210 19 0 chr4 80912835 80912997 -121415350 - FAM SINE Alu -10 165 1 2085 130 0 3 chr4 80913007 80913308 -121415039 - AluSx SINE Alu -12 300 1 383 171 29 67 chr4 80913726 80913831 -121414516 - MER94 DNA DNA -33 101 1 301 191 15 15 chr4 80913904 80913972 -121414375 - LTR33 LTR ERVL -44 477 410 328 275 100 38 chr4 80914010 80914170 -121414177 - LTR33 LTR ERVL -257 264 95 21 36 0 0 chr4 80914562 80914590 -121413757 + AT_rich Low_complexity Low_complexity 1 28 0 1580 116 152 0 chr4 80914850 80915100 -121413247 - AluSx SINE Alu -24 288 1 199 206 0 0 chr4 80915121 80915155 -121413192 - MIR SINE MIR -9 253 220 1235 77 41 6 chr4 80917009 80917178 -121411169 - AluSg/x SINE Alu -13 299 125 664 160 194 27 chr4 80918496 80918684 -121409663 - MLT1D LTR MaLR -73 432 216 235 311 153 14 chr4 80918792 80919014 -121409333 - MLT1K LTR MaLR -123 465 213 228 328 76 0 chr4 80919139 80919258 -121409089 - L1MC4a LINE L1 -1846 5962 5835 217 265 20 0 chr4 80920667 80920716 -121407631 - L2 LINE L2 0 3272 3223 2281 97 0 7 chr4 80921476 80921775 -121406572 - AluSx SINE Alu -15 297 1 218 250 0 0 chr4 80921777 80921825 -121406522 - L2 LINE L2 -11 3261 3214 659 183 0 0 chr4 80922007 80922111 -121406236 + FLAM_C SINE Alu 26 129 -14 230 299 91 13 chr4 80923001 80923078 -121405269 + L2 LINE L2 3165 3247 -25 234 308 15 0 chr4 80923590 80923655 -121404692 + L2 LINE L2 3242 3307 -6 583 251 38 95 chr4 80924623 80924805 -121403542 + MIR SINE MIR 15 206 -56 2128 129 0 0 chr4 80924805 80925091 -121403256 + AluSx SINE Alu 1 286 -26 192 97 0 0 chr4 80925095 80925126 -121403221 + (CATA)n Simple_repeat Simple_repeat 2 32 0 583 251 38 95 chr4 80925126 80925201 -121403146 + MIR SINE MIR 209 262 0 388 340 86 19 chr4 80926580 80926848 -121401499 + MARNA DNA Mariner 274 559 -27 610 332 97 5 chr4 80929276 80929677 -121398670 - L2 LINE L2 -785 2529 2092 193 268 71 0 chr4 80930215 80930271 -121398076 - MIR SINE MIR -30 232 173 21 0 0 0 chr4 80930378 80930399 -121397948 + AT_rich Low_complexity Low_complexity 1 21 0 237 306 0 14 chr4 80931107 80931179 -121397168 - MIR3 SINE MIR -9 199 129 244 372 22 17 chr4 80931299 80931479 -121396868 + MER117 DNA MER1_type 17 197 0 209 348 93 13 chr4 80931513 80931749 -121396598 - L2 LINE L2 -337 2977 2723 185 139 23 0 chr4 80932151 80932194 -121396153 + A-rich Low_complexity Low_complexity 2 45 0 227 115 58 23 chr4 80932913 80933000 -121395347 + (TA)n Simple_repeat Simple_repeat 2 91 0 365 267 0 30 chr4 80933000 80933101 -121395246 - L1MC4 LINE L1 -1331 6711 6614 748 134 75 30 chr4 80933112 80933246 -121395101 + FLAM_C SINE Alu 2 141 -2 1240 194 0 0 chr4 80933254 80933460 -121394887 - MER2 DNA MER2_type -139 206 1 1676 186 83 24 chr4 80934421 80934593 -121393754 - Charlie5 DNA MER1_type 0 2624 2464 2337 62 3 36 chr4 80934593 80934899 -121393448 + AluY SINE Alu 1 296 -15 1676 186 83 24 chr4 80934899 80935194 -121393153 - Charlie5 DNA MER1_type -160 2464 2129 905 209 27 5 chr4 80935168 80935355 -121392992 - Charlie5 DNA MER1_type -2420 192 2 * 187 323 127 45 chr4 80936504 80936724 -121391623 + MIR SINE MIR 6 243 -19 586 291 77 5 chr4 80937234 80937430 -121390917 - MIR SINE MIR -30 232 23 566 111 269 0 chr4 80937901 80938009 -121390338 - FLAM_C SINE Alu -5 138 2 406 220 178 8 chr4 80938720 80938838 -121389509 + MIR3 SINE MIR 23 160 -48 1321 168 0 5 chr4 80938870 80939079 -121389268 - MER58A DNA MER1_type -15 209 2 297 0 0 0 chr4 80939705 80939738 -121388609 + (CA)n Simple_repeat Simple_repeat 2 34 0 230 123 70 18 chr4 80939738 80939852 -121388495 + (TA)n Simple_repeat Simple_repeat 2 121 0 640 219 60 7 chr4 80941188 80941339 -121387008 + MIR SINE MIR 36 194 -68 2119 118 10 0 chr4 80941455 80941752 -121386595 - AluSx SINE Alu -12 300 1 185 81 0 27 chr4 80942169 80942206 -121386141 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 2278 221 74 27 chr4 80942290 80942884 -121385463 + MLT1E3 LTR MaLR 3 624 0 2317 105 3 0 chr4 80942970 80943276 -121385071 + AluSg SINE Alu 1 307 -3 230 279 82 75 chr4 80944931 80945078 -121383269 + MIR3 SINE MIR 20 167 -41 259 195 272 9 chr4 80945731 80945846 -121382501 - MIR SINE MIR -58 204 63 434 340 40 0 chr4 80947522 80947672 -121380675 + L2 LINE L2 3116 3271 -1 979 172 0 32 chr4 80947743 80947929 -121380418 - AluJo SINE Alu -6 306 127 314 225 28 0 chr4 80948343 80948414 -121379933 - MIR3 SINE MIR -39 169 97 28 0 0 0 chr4 80948524 80948552 -121379795 + AT_rich Low_complexity Low_complexity 1 28 0 1652 135 40 0 chr4 80948864 80949116 -121379231 + MER7A DNA MER2_type 1 260 -86 768 143 25 0 chr4 80949116 80949235 -121379112 - LTR12 LTR ERV1 -234 480 359 385 240 10 0 chr4 80949235 80949335 -121379012 - LTR30 LTR ERV1 -98 624 524 762 120 57 133 chr4 80949335 80949579 -121378768 - LTR12 LTR ERV1 -456 1523 55 235 250 0 0 chr4 80949591 80949643 -121378704 - LTR30 LTR ERV1 -670 52 1 2085 147 31 3 chr4 80949660 80949986 -121378361 + MER1B DNA MER1_type 3 337 0 396 277 0 0 chr4 80949986 80950069 -121378278 + MER7A DNA MER2_type 254 336 0 225 236 0 83 chr4 80950563 80950635 -121377712 - MIR SINE MIR -125 83 18 588 230 43 31 chr4 80951683 80951844 -121376503 + MIR SINE MIR 30 192 -70 287 319 43 51 chr4 80952390 80952625 -121375722 - L2 LINE L2 -855 2459 2227 193 191 48 0 chr4 80953892 80953934 -121374413 - MIR3 SINE MIR -3 205 162 252 0 0 0 chr4 80954142 80954170 -121374177 + (T)n Simple_repeat Simple_repeat 1 28 0 1011 124 65 0 chr4 80954189 80954342 -121374005 + FRAM SINE Alu 1 162 -14 2369 95 3 0 chr4 80954343 80954647 -121373700 + AluSg SINE Alu 1 305 -5 23 0 0 0 chr4 80954647 80954670 -121373677 + AT_rich Low_complexity Low_complexity 1 23 0 1820 152 3 14 chr4 81055663 81055797 -121272550 + AluJb SINE Alu 1 135 -177 2332 104 0 3 chr4 81055797 81056096 -121272251 + AluSx SINE Alu 1 298 -14 1820 152 3 14 chr4 81056096 81056251 -121272096 + AluJb SINE Alu 135 287 -25 2139 116 7 3 chr4 81056880 81057181 -121271166 - AluSx SINE Alu -10 302 1 407 159 0 11 chr4 81058639 81058727 -121269620 - MER50 LTR ERV1 -117 617 531 2309 62 7 13 chr4 81058748 81059052 -121269295 - AluY SINE Alu -9 302 1 1591 143 114 0 chr4 81060231 81060503 -121267844 + AluSx SINE Alu 1 303 -9 237 192 0 0 chr4 81061519 81061571 -121266776 - L1MA5A LINE L1 -127 6170 6119 470 120 0 0 chr4 81061829 81061904 -121266443 - L1MA5 LINE L1 -196 6104 6030 2032 208 77 72 chr4 81062244 81063120 -121265227 - L1M4 LINE L1 -2375 3771 2892 253 312 32 21 chr4 81063425 81063518 -121264829 - L3 LINE CR1 -20 1557 1464 534 152 0 172 chr4 81063526 81063677 -121264670 - FLAM_C SINE Alu -8 125 1 186 43 0 0 chr4 81063892 81063915 -121264432 + (A)n Simple_repeat Simple_repeat 1 23 0 287 278 20 106 chr4 81063946 81064069 -121264278 + L3 LINE CR1 863 972 -605 2230 110 3 3 chr4 81064069 81064368 -121263979 + AluSx SINE Alu 1 299 -13 287 278 20 106 chr4 81064368 81064395 -121263952 + L3 LINE CR1 972 1000 -577 230 235 71 20 chr4 81064433 81064531 -121263816 + L3 LINE CR1 1192 1294 -283 1808 32 0 0 chr4 81064728 81064944 -121263403 + L1PA5 LINE L1 5937 6152 -2 1342 187 122 0 chr4 81064989 81065251 -121263096 - AluJb SINE Alu -8 294 1 24 0 0 0 chr4 81065626 81065650 -121262697 + AT_rich Low_complexity Low_complexity 1 24 0 659 294 57 20 chr4 81065734 81066088 -121262259 - HAL1 LINE L1 -20 2487 2121 1977 121 3 7 chr4 81066179 81066490 -121261857 - AluSg SINE Alu 0 310 1 258 32 0 0 chr4 81066563 81066594 -121261753 + (T)n Simple_repeat Simple_repeat 1 31 0 278 219 200 0 chr4 81066612 81066717 -121261630 + FLAM_C SINE Alu 8 133 0 687 203 31 0 chr4 81066822 81066950 -121261397 - AluJb SINE Alu -34 278 147 1400 108 10 0 chr4 81066950 81067154 -121261193 + MER41C LTR ERV1 1 206 -348 943 121 8 0 chr4 81067163 81067295 -121261052 - AluJb SINE Alu -179 133 1 6020 141 57 14 chr4 81067582 81068870 -121259477 + L1MA6 LINE L1 4186 5565 -735 1938 109 68 41 chr4 81068870 81069208 -121259139 + L1PA16 LINE L1 5808 6154 -12 6020 141 57 14 chr4 81069208 81069720 -121258627 + L1MA6 LINE L1 5565 6054 -246 1965 147 20 0 chr4 81069724 81070016 -121258331 + AluJb SINE Alu 1 298 -14 1007 171 30 34 chr4 81070051 81070285 -121258062 + L1MB8 LINE L1 5935 6167 -11 827 121 35 7 chr4 81070298 81070439 -121257908 - L1PA16 LINE L1 -1 6165 6021 2069 152 0 3 chr4 81070442 81070744 -121257603 - AluSx SINE Alu -11 301 1 511 157 79 0 chr4 81070750 81070839 -121257508 - AluJo SINE Alu -176 136 41 2381 84 7 0 chr4 81071241 81071538 -121256809 - AluY SINE Alu -12 299 1 303 360 54 38 chr4 81071544 81071805 -121256542 + L2 LINE L2 2825 3089 -183 21 0 0 0 chr4 81071838 81071859 -121256488 + AT_rich Low_complexity Low_complexity 1 21 0 1708 176 25 0 chr4 81071866 81072145 -121256202 + AluJo SINE Alu 13 298 -14 225 0 0 0 chr4 81072914 81072939 -121255408 + (A)n Simple_repeat Simple_repeat 1 25 0 2300 59 31 3 chr4 81072987 81073275 -121255072 + AluY SINE Alu 2 297 -14 2081 118 3 10 chr4 81073533 81073830 -121254517 + AluSq SINE Alu 5 299 -14 473 254 68 8 chr4 81073999 81074117 -121254230 + L2 LINE L2 3189 3313 0 357 125 0 0 chr4 81074136 81074192 -121254155 + (CA)n Simple_repeat Simple_repeat 1 56 0 2246 104 3 16 chr4 81074239 81074548 -121253799 - AluSx SINE Alu -7 305 1 1910 153 0 3 chr4 81075386 81075681 -121252666 + AluJb SINE Alu 1 294 -18 684 216 93 26 chr4 81076447 81076520 -121251827 - MER3 DNA MER1_type -1 208 141 2344 101 0 0 chr4 81076520 81076827 -121251520 + AluSg SINE Alu 1 307 -3 684 216 93 26 chr4 81076827 81076947 -121251400 - MER3 DNA MER1_type -68 141 2 237 204 20 20 chr4 81077075 81077124 -121251223 - Alu SINE Alu -16 287 239 306 157 79 22 chr4 81082118 81082207 -121246140 + LTR54B LTR ERV1 393 486 -12 324 0 0 0 chr4 81082209 81082245 -121246102 + (TA)n Simple_repeat Simple_repeat 2 37 0 2426 94 0 0 chr4 81082319 81082616 -121245731 + AluSq SINE Alu 7 303 -10 291 310 63 14 chr4 81083109 81083251 -121245096 + MER5A DNA MER1_type 38 186 -3 416 197 106 15 chr4 81083265 81083397 -121244950 + MER69 DNA AcHobo 2383 2526 0 1858 126 65 0 chr4 81083806 81084084 -121244263 + AluSx SINE Alu 5 300 -12 1990 149 13 0 chr4 81084091 81084399 -121243948 + AluSx SINE Alu 1 312 0 23 24 0 24 chr4 81085593 81085614 -121242733 + AT_rich Low_complexity Low_complexity 1 22 -18 1901 140 0 17 chr4 81085614 81085906 -121242441 - AluJb SINE Alu -25 287 1 23 24 0 24 chr4 81085906 81085925 -121242422 + AT_rich Low_complexity Low_complexity 22 40 0 2124 147 0 0 chr4 81085952 81086252 -121242095 + AluSx SINE Alu 1 300 -12 1846 156 6 32 chr4 81086364 81086679 -121241668 + AluJb SINE Alu 1 307 -5 263 305 76 7 chr4 81086679 81086865 -121241482 + MLT1J LTR MaLR 125 382 -129 1782 164 3 23 chr4 81087170 81087475 -121240872 + AluJo SINE Alu 5 303 -9 1689 186 54 11 chr4 81087676 81088026 -121240321 - MLT1A1 LTR MaLR 0 365 1 2295 99 0 3 chr4 81088283 81088575 -121239772 - AluSx SINE Alu -20 292 2 24 32 0 0 chr4 81089331 81089362 -121238985 + AT_rich Low_complexity Low_complexity 1 31 0 1634 143 112 0 chr4 81090910 81091161 -121237186 - AluSx SINE Alu -33 279 1 1586 168 45 17 chr4 81091419 81091710 -121236637 + AluSx SINE Alu 1 299 -13 1387 150 39 48 chr4 81092097 81092393 -121235954 + MER72 LTR ERV1 15 282 -440 1912 103 61 0 chr4 81093041 81093304 -121235043 - AluSx SINE Alu -25 287 9 2280 105 0 13 chr4 81095243 81095548 -121232799 - AluSq SINE Alu -12 301 1 308 203 0 0 chr4 81098131 81098195 -121230152 + L1MD3 LINE L1 7053 7116 -879 256 265 10 51 chr4 81098195 81098293 -121230054 + MLT1F1 LTR MaLR 38 131 -436 2443 198 32 42 chr4 81098293 81098325 -121230022 + L1MD3 LINE L1 7409 7440 -555 2409 68 0 0 chr4 81098325 81098617 -121229730 + AluY SINE Alu 1 292 -19 2443 198 32 42 chr4 81098617 81099176 -121229171 + L1MD3 LINE L1 7440 7994 -1 2043 115 16 22 chr4 81099675 81099989 -121228358 + AluSq SINE Alu 1 312 -1 774 252 22 31 chr4 81100032 81100254 -121228093 + MIR SINE MIR 11 230 -32 601 270 99 5 chr4 81100266 81100477 -121227870 - MIR SINE MIR -28 234 4 2234 128 0 0 chr4 81101066 81101370 -121226977 + AluSx SINE Alu 1 304 -8 624 271 73 32 chr4 81101383 81101601 -121226746 - MIR SINE MIR -24 238 12 254 315 168 5 chr4 81102485 81102682 -121225665 + L2 LINE L2 2557 2785 -529 1776 181 0 25 chr4 81102908 81103222 -121225125 - AluJo SINE Alu -6 306 1 1986 154 0 0 chr4 81103337 81103635 -121224712 - AluSx SINE Alu -14 298 1 912 172 49 70 chr4 81103635 81103744 -121224603 - Charlie1a DNA MER1_type -2479 282 172 856 114 0 50 chr4 81103744 81103884 -121224463 - FLAM_C SINE Alu 0 133 1 912 172 49 70 chr4 81103884 81104018 -121224329 - Charlie1a DNA MER1_type -2589 172 44 577 227 0 23 chr4 81104643 81104771 -121223576 + FLAM_C SINE Alu 1 125 -8 467 170 0 64 chr4 81104973 81105067 -121223280 + AluJ/FLAM SINE Alu 2 89 -223 708 138 0 0 chr4 81105069 81105185 -121223162 + (CATATA)n Simple_repeat Simple_repeat 2 117 0 917 155 71 0 chr4 81105188 81105343 -121223004 + FRAM SINE Alu 1 166 0 181 343 121 10 chr4 81106370 81106469 -121221878 - L3b LINE CR1 -52 1531 1422 228 135 0 0 chr4 81106471 81106508 -121221839 + (CAGG)n Simple_repeat Simple_repeat 2 38 0 638 211 125 43 chr4 81107528 81107760 -121220587 + MIR SINE MIR 12 262 0 1954 111 0 0 chr4 81108205 81108482 -121219865 - AluSx SINE Alu 0 305 29 6830 132 31 20 chr4 81108714 81109930 -121218417 + L1MA2 LINE L1 4119 5320 -984 2312 109 0 0 chr4 81109930 81110233 -121218114 + AluSc SINE Alu 1 303 -6 6830 132 31 20 chr4 81110233 81110932 -121217415 + L1MA2 LINE L1 5320 6074 -230 2466 71 0 0 chr4 81110932 81111227 -121217120 + AluY SINE Alu 1 295 -16 6830 132 31 20 chr4 81111227 81111461 -121216886 + L1MA2 LINE L1 6074 6304 0 275 282 14 0 chr4 81111558 81111629 -121216718 + LTR1 LTR ERV1 28 99 -686 291 183 42 14 chr4 81111637 81111708 -121216639 + LTR1B LTR ERV1 30 102 -724 1085 219 109 96 chr4 81111721 81112273 -121216074 + LTR1B LTR ERV1 33 591 -235 516 269 212 29 chr4 81112448 81112834 -121215513 - LTR16A1 LTR ERVL 0 457 1 227 349 47 12 chr4 81112859 81112945 -121215402 + L2 LINE L2 3206 3294 -19 2222 102 26 0 chr4 81113345 81113648 -121214699 + AluSx SINE Alu 1 311 -1 507 196 0 10 chr4 81113679 81113776 -121214571 - AluJb SINE Alu -84 228 133 1552 120 9 0 chr4 81113791 81114007 -121214340 + AluSx SINE Alu 1 218 -94 2299 104 0 3 chr4 81114935 81115244 -121213103 + AluSg SINE Alu 1 308 -2 4007 177 26 37 chr4 81115334 81115792 -121212555 + L1MA9 LINE L1 5483 5929 -383 4130 109 8 80 chr4 81115792 81116507 -121211840 - MER4A LTR ERV1 0 664 1 4007 177 26 37 chr4 81116507 81116880 -121211467 + L1MA9 LINE L1 5929 6305 -7 816 142 0 0 chr4 81116937 81117057 -121211290 + MER4A LTR ERV1 458 577 -87 3116 161 43 83 chr4 81117101 81117821 -121210526 - LTR8 LTR ERV1 0 691 1 502 270 113 27 chr4 81118010 81118195 -121210152 + LTR1 LTR ERV1 28 228 -557 633 212 27 133 chr4 81118282 81118643 -121209704 + LTR1B LTR ERV1 346 1020 0 527 232 51 40 chr4 81118754 81118944 -121209403 + MLT1J1 LTR MaLR 1 191 -218 1486 126 14 0 chr4 81119238 81119445 -121208902 + AluSx SINE Alu 1 210 -102 451 103 0 126 chr4 81120117 81120204 -121208143 - MLT1A2 LTR MaLR -298 76 1 2085 127 0 0 chr4 81120244 81120557 -121207790 + AluSx SINE Alu 1 313 0 532 251 75 81 chr4 81120563 81120956 -121207391 + L1MEd LINE L1 1003 1434 -4876 1803 160 3 24 chr4 81120956 81121244 -121207103 + AluJb SINE Alu 1 282 -30 532 251 75 81 chr4 81121244 81121393 -121206954 + L1MEd LINE L1 1434 1582 -4728 2330 103 20 0 chr4 81121396 81121697 -121206650 + AluSx SINE Alu 1 307 -5 237 247 0 61 chr4 81122123 81122233 -121206114 + L1MEd LINE L1 2114 2217 -3912 1356 271 67 32 chr4 81122247 81122674 -121205673 + LTR33 LTR ERVL 38 449 -72 2440 110 8 11 chr4 81122674 81123030 -121205317 + THE1A LTR MaLR 1 355 0 1356 271 67 32 chr4 81123030 81123061 -121205286 + LTR33 LTR ERVL 444 513 -3 2290 110 3 13 chr4 81123061 81123370 -121204977 - AluSq SINE Alu -7 306 1 442 234 86 17 chr4 81123382 81123557 -121204790 + L1MEd LINE L1 2215 2401 -3728 28 61 0 0 chr4 81123938 81123987 -121204360 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr4 81124058 81124080 -121204267 + AT_rich Low_complexity Low_complexity 1 22 0 273 244 49 0 chr4 81124081 81124163 -121204184 + L1ME LINE L1 5607 5692 -429 360 0 0 0 chr4 81124417 81124457 -121203890 + (TG)n Simple_repeat Simple_repeat 2 41 0 198 0 0 0 chr4 81124479 81124501 -121203846 + (TG)n Simple_repeat Simple_repeat 2 23 0 270 0 0 0 chr4 81124521 81124551 -121203796 + (TG)n Simple_repeat Simple_repeat 2 31 0 1651 153 183 19 chr4 81124562 81124928 -121203419 + MSTA LTR MaLR 1 426 -2 2147 146 39 0 chr4 81125045 81125380 -121202967 + MER7A DNA MER2_type 1 346 0 399 192 15 0 chr4 81125389 81125535 -121202812 - L1MC4 LINE L1 -1056 6729 6415 1069 148 0 0 chr4 81126624 81126786 -121201561 + FRAM SINE Alu 4 165 -11 2059 97 0 58 chr4 81128525 81128833 -121199514 - AluSx SINE Alu -22 290 1 657 294 47 21 chr4 81129172 81129407 -121198940 - LTR33 LTR ERVL -250 271 31 786 163 54 8 chr4 81129551 81129680 -121198667 + AluJ SINE Alu 2 136 -176 2342 83 0 20 chr4 81129686 81129988 -121198359 + AluY SINE Alu 1 296 -15 29 84 0 0 chr4 81129988 81130059 -121198288 + AT_rich Low_complexity Low_complexity 1 71 0 760 182 128 0 chr4 81130067 81130242 -121198105 + AluJ SINE Alu 117 310 0 1282 133 0 0 chr4 81130261 81130442 -121197905 - AluSg/x SINE Alu -14 296 116 1469 166 12 75 chr4 81130604 81130935 -121197412 + AluJo SINE Alu 1 310 -2 401 251 116 42 chr4 81130942 81131157 -121197190 + L1MC4 LINE L1 7640 7870 -172 264 259 25 12 chr4 81132168 81132249 -121196098 - MIR SINE MIR -17 245 164 463 255 128 29 chr4 81132744 81132948 -121195399 + MIR SINE MIR 36 259 -3 207 0 0 0 chr4 81133713 81133736 -121194611 + (CCCCCG)n Simple_repeat Simple_repeat 3 25 0 246 62 0 0 chr4 81133739 81133771 -121194576 + (TCC)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr4 81133907 81133929 -121194418 + GC_rich Low_complexity Low_complexity 1 22 0 200 35 35 0 chr4 81134151 81134180 -121194167 + (GAAAA)n Simple_repeat Simple_repeat 5 34 0 228 146 24 0 chr4 81134238 81134279 -121194068 + G-rich Low_complexity Low_complexity 1 42 0 283 191 0 0 chr4 81135341 81135383 -121192964 - L2 LINE L2 -80 3192 3151 312 219 61 35 chr4 81135407 81135521 -121192826 + L2 LINE L2 3133 3249 -64 331 313 218 6 chr4 81135637 81135816 -121192531 - L2 LINE L2 -259 3054 2838 821 176 47 12 chr4 81136066 81136236 -121192111 + L1MB7 LINE L1 5628 5803 -381 604 168 21 0 chr4 81136293 81136388 -121191959 - AluJ/FLAM SINE Alu -210 102 6 1324 182 20 12 chr4 81136389 81136642 -121191705 + L1MB7 LINE L1 5785 6039 -145 1065 154 5 37 chr4 81136649 81136837 -121191510 - AluJb SINE Alu -2 310 129 760 119 56 28 chr4 81136841 81136911 -121191436 + L1MB7 LINE L1 6029 6096 -88 1082 151 124 46 chr4 81136911 81137129 -121191218 - MER46A DNA MER2_type -1 235 1 760 119 56 28 chr4 81137129 81137201 -121191146 + L1MB7 LINE L1 6096 6175 -9 1810 181 16 0 chr4 81137519 81137822 -121190525 - AluJb SINE Alu -4 308 1 2139 113 14 3 chr4 81137877 81138170 -121190177 - AluSx SINE Alu -16 296 1 674 186 59 0 chr4 81138357 81138475 -121189872 + FLAM_C SINE Alu 3 127 -6 733 265 67 36 chr4 81138488 81138741 -121189606 - MIR SINE MIR 0 262 2 2109 126 0 3 chr4 81139022 81139316 -121189031 + AluSx SINE Alu 4 296 -16 2555 74 3 0 chr4 81140205 81140515 -121187832 - AluSp SINE Alu -2 311 1 1306 124 50 70 chr4 81141964 81142222 -121186125 - MER4E LTR ERV1 -10 769 517 1811 129 27 34 chr4 81142256 81142551 -121185796 - AluSg SINE Alu -11 299 7 2649 177 46 34 chr4 81142555 81143081 -121185266 - MER4E LTR ERV1 -247 532 1 2146 131 78 125 chr4 81143167 81143475 -121184872 - LTR54 LTR ERV1 0 510 236 591 222 8 24 chr4 81143475 81143601 -121184746 + FLAM_A SINE Alu 4 127 -6 2146 131 78 125 chr4 81143601 81143827 -121184520 - LTR54 LTR ERV1 -274 236 1 1767 138 7 34 chr4 81144033 81144350 -121183997 + AluJb SINE Alu 1 309 0 8009 22 0 0 chr4 81144398 81145546 -121182801 - L1PA4 LINE L1 -6 6149 4997 7133 28 0 0 chr4 81145547 81146375 -121181972 + L1PA4 LINE L1 4176 5003 -1143 240 163 0 23 chr4 81146517 81146560 -121181787 + MIR SINE MIR 71 112 -150 1680 146 90 0 chr4 81146568 81146836 -121181511 - AluJb SINE Alu 0 312 21 495 254 37 30 chr4 81146878 81147012 -121181335 + MIR SINE MIR 109 243 -19 783 147 91 14 chr4 81147066 81147209 -121181138 - MLT1F1 LTR MaLR -1 566 413 * 4237 131 37 27 chr4 81147205 81147346 -121181001 - MER50 LTR ERV1 -23 711 573 2154 79 13 63 chr4 81147346 81147661 -121180686 + AluSp SINE Alu 1 299 -14 4237 131 37 27 chr4 81147661 81148223 -121180124 - MER50 LTR ERV1 -161 573 1 598 198 119 46 chr4 81148235 81148538 -121179809 - MLT1F1 LTR MaLR -154 439 1 579 148 11 0 chr4 81148721 81148809 -121179538 - AluJo SINE Alu -26 286 198 825 164 60 0 chr4 81148813 81148947 -121179400 - AluJo SINE Alu -169 143 2 1857 112 22 0 chr4 81148966 81149234 -121179113 - AluSq SINE Alu -4 309 36 222 353 24 0 chr4 81149235 81149320 -121179027 - MIR SINE MIR -157 105 19 1564 188 54 68 chr4 81149327 81149383 -121178964 - MLT2D LTR ERVL -7 407 352 492 32 0 0 chr4 81149383 81149445 -121178902 + (GA)n Simple_repeat Simple_repeat 1 62 0 1564 188 54 68 chr4 81149445 81149798 -121178549 - MLT2D LTR ERVL -62 352 4 1376 138 89 32 chr4 81150128 81150375 -121177972 - AluJo SINE Alu -16 296 36 223 214 57 43 chr4 81150478 81150548 -121177799 + L2 LINE L2 3242 3312 -1 1689 224 63 49 chr4 81150580 81151071 -121177276 - LTR33 LTR ERVL -23 498 1 21 0 0 0 chr4 81151198 81151219 -121177128 + AT_rich Low_complexity Low_complexity 1 21 0 2521 76 0 0 chr4 81151221 81151525 -121176822 + AluSc SINE Alu 1 304 -5 256 323 46 31 chr4 81151911 81152041 -121176306 - MIR3 SINE MIR -71 137 6 479 328 121 0 chr4 81152158 81152356 -121175991 - MIR SINE MIR -1 261 40 253 240 131 32 chr4 81153045 81153159 -121175188 - MIR SINE MIR -65 143 38 305 353 75 8 chr4 81153305 81153438 -121174909 + MIR SINE MIR 5 146 -116 271 261 14 0 chr4 81153439 81153508 -121174839 + MLT1L LTR MaLR 10 79 -536 783 258 79 18 chr4 81154057 81154520 -121173827 + LTR33 LTR ERVL 10 521 0 287 200 18 0 chr4 81155671 81155726 -121172621 - MLT1J2 LTR MaLR -323 127 72 944 343 33 16 chr4 81155795 81156247 -121172100 + LTR16B LTR ERVL 3 462 -2 1590 156 6 67 chr4 81156381 81156696 -121171651 + AluJb SINE Alu 15 310 -2 270 294 0 12 chr4 81157198 81157283 -121171064 - L2 LINE L2 -1 3312 3229 2100 110 0 45 chr4 81157335 81157645 -121170702 + AluSg SINE Alu 1 296 -14 1727 126 153 0 chr4 81157655 81157917 -121170430 + AluSq SINE Alu 2 303 0 327 222 59 143 chr4 81158552 81158628 -121169719 - MIR3 SINE MIR -22 186 105 2080 110 40 0 chr4 81158628 81158928 -121169419 + AluSx SINE Alu 1 312 0 327 222 59 143 chr4 81158928 81159054 -121169293 - MIR3 SINE MIR -103 105 1 883 309 72 36 chr4 81161369 81161925 -121166422 + L1ME4a LINE L1 5502 6077 -44 3200 183 83 8 chr4 81162111 81162724 -121165623 - MER67B LTR ERV1 0 661 3 2514 84 0 0 chr4 81162759 81163070 -121165277 + AluSx SINE Alu 1 311 -1 310 284 178 19 chr4 81163296 81163504 -121164843 + LTR16A LTR ERVL 198 438 -12 361 353 75 8 chr4 81163865 81163998 -121164349 + L2 LINE L2 3129 3270 -2 326 258 86 11 chr4 81164043 81164136 -121164211 - MIR SINE MIR -4 258 159 486 251 70 43 chr4 81164140 81164252 -121164095 - LTR16A LTR ERVL -4 446 339 1528 184 32 32 chr4 81164252 81164562 -121163785 + AluJb SINE Alu 1 310 -2 486 251 70 43 chr4 81164562 81164755 -121163592 - LTR16A LTR ERVL -111 339 57 407 283 66 26 chr4 81164782 81164934 -121163413 - MIR SINE MIR -102 160 3 210 327 77 39 chr4 81165135 81165239 -121163108 - L2 LINE L2 -42 3230 3123 637 264 130 9 chr4 81165788 81166019 -121162328 + MIR SINE MIR 1 259 -3 244 299 0 13 chr4 81166048 81166125 -121162222 - L2 LINE L2 -36 3277 3202 1788 136 72 0 chr4 81166323 81166588 -121161759 - AluSx SINE Alu -28 284 1 394 258 108 25 chr4 81166622 81166742 -121161605 + L2 LINE L2 3143 3272 0 315 313 115 31 chr4 81166755 81166865 -121161482 - L2 LINE L2 -256 3016 2917 4637 169 55 4 chr4 81166865 81167610 -121160737 - LTR39 LTR ERV1 0 783 1 315 313 115 31 chr4 81167610 81167820 -121160527 - L2 LINE L2 -355 2917 2665 886 283 140 30 chr4 81167938 81168366 -121159981 - MLT1H LTR MaLR 0 549 75 981 166 0 37 chr4 81172236 81172399 -121155948 + AluJo SINE Alu 1 157 -155 201 74 0 0 chr4 81172399 81172426 -121155921 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 250 143 0 0 chr4 81173006 81173041 -121155306 + Alu SINE Alu 1 35 -266 666 193 0 140 chr4 81173603 81173810 -121154537 - MER5B DNA MER1_type 0 178 1 2255 108 7 3 chr4 81175163 81175469 -121152878 + AluSx SINE Alu 1 307 -5 22 35 0 0 chr4 81175930 81175959 -121152388 + AT_rich Low_complexity Low_complexity 1 29 0 2408 86 3 0 chr4 81176163 81176465 -121151882 + AluSp SINE Alu 1 303 -10 704 157 0 0 chr4 81177045 81177153 -121151194 + FLAM_C SINE Alu 1 108 -35 21 0 0 0 chr4 81177184 81177205 -121151142 + AT_rich Low_complexity Low_complexity 1 21 0 212 182 91 0 chr4 81177976 81178020 -121150327 - L2 LINE L2 -7 3265 3218 22 0 0 0 chr4 81179495 81179517 -121148830 + GC_rich Low_complexity Low_complexity 1 22 0 507 217 66 45 chr4 81181100 81181298 -121147049 + L1MC5 LINE L1 7724 7925 -36 290 344 0 0 chr4 81183553 81183649 -121144698 - L2 LINE L2 -5 3308 3213 2005 157 0 3 chr4 81184082 81184381 -121143966 + AluJb SINE Alu 1 298 -14 1592 92 0 0 chr4 81185562 81185757 -121142590 + AluSc SINE Alu 98 292 -17 618 208 48 30 chr4 81185849 81186017 -121142330 - MER69 DNA AcHobo 0 2526 2356 2078 198 109 30 chr4 81186021 81186764 -121141583 - MLT1D LTR MaLR 0 505 64 2217 110 0 28 chr4 81186806 81186839 -121141508 - AluSx SINE Alu -4 308 276 185 0 40 0 chr4 81186839 81186864 -121141483 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2217 110 0 28 chr4 81186864 81187147 -121141200 - AluSx SINE Alu -36 276 1 655 122 0 0 chr4 81187147 81187237 -121141110 + U6 snRNA snRNA 18 107 0 1864 166 20 0 chr4 81187254 81187555 -121140792 + AluJo SINE Alu 5 311 -1 428 236 0 47 chr4 81187570 81187676 -121140671 - MLT1D LTR MaLR -404 101 1 * 642 244 52 3 chr4 81187676 81187818 -121140529 - MLT1G1 LTR MaLR -387 162 13 2578 221 86 28 chr4 81187830 81188679 -121139668 - MER69 DNA AcHobo -171 2355 1458 626 289 52 16 chr4 81188655 81188849 -121139498 - MER69 DNA AcHobo -2227 299 99 * 3341 142 10 15 chr4 81188849 81188903 -121139444 - MLT2B1 LTR ERVL 0 520 467 2172 187 0 0 chr4 81188903 81189250 -121139097 + MER7A DNA MER2_type 2 346 0 3341 142 10 15 chr4 81189250 81189718 -121138629 - MLT2B1 LTR ERVL -53 467 1 432 212 35 0 chr4 81189718 81189799 -121138548 - MER69 DNA AcHobo -1123 103 20 564 306 78 16 chr4 81189800 81190045 -121138302 - MIR SINE MIR -1 261 2 312 301 73 52 chr4 81191207 81191343 -121137004 - L2 LINE L2 -1 3271 3133 935 135 0 0 chr4 81191720 81191861 -121136486 - AluSp/q SINE Alu -3 310 170 2300 84 0 7 chr4 81192029 81192326 -121136021 - AluY SINE Alu -16 295 1 228 327 40 0 chr4 81192366 81192467 -121135880 - L1ME4a LINE L1 -53 6068 5964 245 98 0 20 chr4 81192468 81192519 -121135828 + (TA)n Simple_repeat Simple_repeat 2 51 0 1513 176 67 3 chr4 81192586 81192870 -121135477 + AluJo SINE Alu 1 302 -10 362 230 86 43 chr4 81193059 81193221 -121135126 - L1ME4a LINE L1 -222 5948 5776 773 181 0 24 chr4 81193221 81193348 -121134999 + FLAM_C SINE Alu 1 124 -9 362 230 86 43 chr4 81193348 81193372 -121134975 - L1ME4a LINE L1 -394 5776 5754 1332 132 37 12 chr4 81193383 81193626 -121134721 + MER6 DNA MER2_type 616 864 -1 868 170 12 35 chr4 81193744 81193915 -121134432 - L1PB4 LINE L1 0 6156 5990 363 328 106 22 chr4 81194066 81194246 -121134101 + MIR SINE MIR 12 206 -56 370 244 231 26 chr4 81194291 81194447 -121133900 + MIR SINE MIR 47 234 -28 2120 144 0 6 chr4 81195647 81195960 -121132387 - AluSx SINE Alu -1 311 1 185 310 219 13 chr4 81196363 81196518 -121131829 - L2 LINE L2 -3 3310 3124 304 253 63 0 chr4 81196737 81196816 -121131531 + LTR16C LTR ERVL 188 271 -220 3643 295 71 50 chr4 81196866 81198850 -121129497 + ERVL LTR ERVL 2233 4257 -1507 871 188 35 59 chr4 81250681 81250883 -121077464 - MER20 DNA MER1_type -22 197 1 268 158 70 0 chr4 81252744 81252801 -121075546 - L1MA9 LINE L1 -4 6308 6248 893 148 218 51 chr4 81252801 81253017 -121075330 + AluSp SINE Alu 35 286 -27 510 187 263 6 chr4 81253017 81253188 -121075159 - L1MA9 LINE L1 -56 6256 6042 291 244 105 12 chr4 81253305 81253391 -121074956 - HERVL LTR ERVL -2604 3050 2957 702 236 52 21 chr4 81253705 81253896 -121074451 - REP3 LTR ERV -311 251 55 600 230 151 0 chr4 81254904 81255056 -121073291 + MLT1D LTR MaLR 261 435 -70 233 183 150 0 chr4 81255117 81255177 -121073170 + MLT1D LTR MaLR 436 504 -1 1941 103 113 26 chr4 81255641 81256029 -121072318 - L1PA13 LINE L1 -17 6146 5725 243 209 104 0 chr4 81256275 81256342 -121072005 + MLT2C1 LTR ERVL 32 105 -292 409 328 104 14 chr4 81257004 81257361 -121070986 - HERVL LTR ERVL -547 5107 4719 280 237 62 68 chr4 81258632 81258809 -121069538 - LTR16A1 LTR ERVL -30 427 252 225 314 25 66 chr4 81258857 81258978 -121069369 - LTR16C LTR ERVL -299 192 77 356 315 112 11 chr4 81259408 81259586 -121068761 + MLT1K LTR MaLR 376 571 -17 387 0 0 0 chr4 81260581 81260626 -121067721 + MADE1 DNA Mariner 2 46 -34 2001 124 230 2 chr4 81261107 81261541 -121066806 - L1MA2 LINE L1 -5 6299 5767 1487 192 111 0 chr4 81262567 81262911 -121065436 - MER57A LTR ERV1 -9 394 13 249 0 0 0 chr4 81262896 81262923 -121065424 + MER57A LTR ERV1 9 35 -368 * 3473 196 188 17 chr4 81263100 81263139 -121065208 - L1MA9 LINE L1 -155 6873 6842 1591 162 52 0 chr4 81263139 81263410 -121064937 + AluSx SINE Alu 1 285 -27 3473 196 188 17 chr4 81263410 81265234 -121063113 - L1MA9 LINE L1 -186 6842 4607 872 242 95 101 chr4 81266106 81266589 -121061758 + MLT1F1 LTR MaLR 86 565 -2 335 200 53 0 chr4 81267184 81267259 -121061088 - Charlie5 DNA MER1_type -27 2585 2507 8196 133 126 65 chr4 81267523 81267707 -121060640 - L1MA9 LINE L1 -5018 1845 1674 240 229 9 162 chr4 81267707 81267812 -121060535 - MER39 LTR ERV1 -253 454 366 8196 133 126 65 chr4 81267812 81269261 -121059086 - L1MA9 LINE L1 -5189 1674 2 239 250 136 49 chr4 81272818 81273002 -121055345 + MLT1J LTR MaLR 269 468 -43 461 238 103 22 chr4 81273326 81273511 -121054836 - LTR16C LTR ERVL -3 488 289 268 322 107 0 chr4 81273542 81273663 -121054684 - LTR16C LTR ERVL -277 214 81 1494 199 92 9 chr4 81274883 81275200 -121053147 + LTR32 LTR ERVL 17 359 -112 275 130 109 0 chr4 81275273 81275319 -121053028 + LTR32 LTR ERVL 317 367 -104 631 206 99 7 chr4 81275319 81275460 -121052887 + LTR32 LTR ERVL 316 469 -2 249 287 98 25 chr4 81275805 81275927 -121052420 - LTR16C LTR ERVL -167 324 194 230 138 0 121 chr4 81276184 81276242 -121052105 - L2 LINE L2 -2075 1239 1189 1033 124 76 22 chr4 81276730 81276915 -121051432 - L1PB2 LINE L1 -2 6149 5955 758 295 132 24 chr4 81277414 81277784 -121050563 - LTR16A LTR ERVL -7 443 34 419 313 135 16 chr4 81278998 81279302 -121049045 - LTR16B LTR ERVL -19 445 106 719 341 79 10 chr4 81279909 81280383 -121047964 - HERVL LTR ERVL -881 4604 4096 248 254 75 45 chr4 81282829 81282963 -121045384 - LTR16A1 LTR ERVL -81 376 239 185 292 21 90 chr4 81283093 81283237 -121045110 + L3 LINE CR1 71 204 -1373 1856 155 16 59 chr4 81284808 81285182 -121043165 - THE1B LTR MaLR -2 362 5 1839 176 58 27 chr4 81285484 81286017 -121042330 - MLT2A2 LTR ERVL -8 546 2 255 167 0 0 chr4 81286970 81287006 -121041341 + MLT1K LTR MaLR 188 223 -365 402 281 54 36 chr4 81287176 81287343 -121041004 + MLT1K LTR MaLR 411 580 -8 593 207 114 96 chr4 81292044 81292368 -121035979 - LTR16A1 LTR ERVL -114 343 14 3050 94 67 0 chr4 81293420 81293985 -121034362 - L1P3 LINE L1 -690 5482 4889 504 293 140 29 chr4 81295048 81295362 -121032985 - LTR16A1 LTR ERVL -106 351 3 337 202 36 25 chr4 81297465 81297569 -121030778 + MLT1E LTR MaLR 1 108 -466 2024 152 103 0 chr4 81297645 81297975 -121030372 - THE1B LTR MaLR 0 364 1 1252 219 98 123 chr4 81298136 81298530 -121029817 - MER44D DNA MER2_type -1884 603 171 12991 39 25 0 chr4 81298530 81300863 -121027484 + L1PA4 LINE L1 3783 6152 -3 1252 219 98 123 chr4 81300863 81301030 -121027317 - MER44D DNA MER2_type -2316 171 1 703 256 64 25 chr4 81301062 81301265 -121027082 + MLT1E LTR MaLR 375 585 -8 23 0 0 0 chr4 81304936 81304959 -121023388 + AT_rich Low_complexity Low_complexity 1 23 0 6142 61 143 61 chr4 81304997 81306074 -121022273 - MER11A LTR ERVK 0 1266 1 338 256 96 16 chr4 81306237 81306362 -121021985 - MLT1J LTR MaLR -333 178 44 288 232 0 0 chr4 81307472 81307528 -121020819 + MLT1L LTR MaLR 424 479 -136 350 234 175 6 chr4 81307966 81308137 -121020210 - LTR16C LTR ERVL -4 487 288 285 260 137 0 chr4 81310330 81310457 -121017890 - LTR16C LTR ERVL -4 487 312 991 301 84 5 chr4 81311322 81311701 -121016646 - LTR16A LTR ERVL -11 439 31 275 259 59 47 chr4 81314541 81314626 -121013721 + MLT1K LTR MaLR 188 273 -315 352 277 92 36 chr4 81314728 81314923 -121013424 + MLT1K LTR MaLR 376 581 -7 399 333 44 6 chr4 81316093 81316273 -121012074 - LTR16B LTR ERVL -164 300 114 286 279 19 10 chr4 81316461 81316565 -121011782 - ERVL LTR ERVL -441 5323 5219 1935 144 46 25 chr4 81317352 81317719 -121010628 + THE1C LTR MaLR 1 375 0 578 228 108 89 chr4 81320028 81320352 -121007995 - LTR16A1 LTR ERVL -114 343 14 6071 83 61 0 chr4 81321465 81322685 -121005662 - L1PA8 LINE L1 -15 6157 4889 1368 220 136 57 chr4 81323698 81324207 -121004140 - MER44D DNA MER2_type -1 604 1 724 252 18 37 chr4 81324235 81324453 -121003894 + MLT1E LTR MaLR 375 588 -5 239 244 0 0 chr4 81324469 81324514 -121003833 - Charlie8 DNA MER1_type -2198 219 175 320 304 92 22 chr4 81328231 81328458 -120999889 - MLT1J LTR MaLR -254 257 15 7476 122 63 15 chr4 81328924 81330151 -120998196 - HSMAR1 DNA Mariner 0 1287 2 257 261 52 52 chr4 81330806 81330921 -120997426 + MLT1J LTR MaLR 257 371 -140 * 269 186 0 0 chr4 81330891 81330934 -120997413 + MLT1L LTR MaLR 440 482 -133 447 264 161 6 chr4 81331380 81331554 -120996793 - LTR16C LTR ERVL -3 488 288 727 312 79 13 chr4 81332165 81332543 -120995804 - LTR16A LTR ERVL -23 427 25 285 387 24 0 chr4 81334376 81334500 -120993847 - LTR16B LTR ERVL -190 274 148 715 293 63 63 chr4 81336029 81336552 -120991795 - ERVL LTR ERVL -1118 4646 4124 39206 81 14 7 chr4 81336652 81342748 -120985599 - L1PA6 LINE L1 -8 6146 11 12533 148 16 16 chr4 81342758 81344851 -120983496 - L1P LINE L1 -4043 2103 11 231 94 0 0 chr4 81347439 81347471 -120980876 - tRNA-Gly-GGA tRNA tRNA -38 37 6 1199 213 113 39 chr4 81347493 81347882 -120980465 - LTR42 LTR ERVL 0 495 78 267 239 84 0 chr4 81348604 81348675 -120979672 + MLT1K LTR MaLR 505 581 -7 1309 196 109 39 chr4 81348927 81349161 -120979186 - MER7A DNA MER2_type -2706 332 71 1748 149 71 0 chr4 81349161 81349430 -120978917 + AluSx SINE Alu 1 288 -24 1309 196 109 39 chr4 81349430 81349506 -120978841 - MER7A DNA MER2_type -2967 71 2 2228 58 52 7 chr4 81349603 81349894 -120978453 + AluY SINE Alu 1 304 -7 991 183 123 12 chr4 81349986 81350237 -120978110 - MER34B LTR ERV1 -127 438 160 5341 157 111 11 chr4 81350301 81352197 -120976150 - L1PA13 LINE L1 -6 6157 4076 349 233 120 16 chr4 81352326 81352482 -120975865 - MER34C LTR ERV1 -404 161 10 655 331 72 0 chr4 81355047 81355325 -120973022 - ERVL LTR ERVL -1330 4434 4137 2180 24 0 0 chr4 81356266 81356514 -120971833 + L1HS LINE L1 5908 6155 0 447 305 151 13 chr4 81357366 81357671 -120970676 - LTR16A LTR ERVL -78 372 26 330 255 91 125 chr4 81358899 81359323 -120969024 + MLT1F1 LTR MaLR 22 431 -136 320 91 0 0 chr4 81361059 81361103 -120967244 - THE1B-int LTR MaLR -381 1199 1156 4346 84 32 9 chr4 81361105 81362110 -120966237 - MER11A LTR ERVK 0 1266 1 4604 123 12 10 chr4 81362110 81362786 -120965561 - THE1B-int LTR MaLR -421 1159 483 * 38579 84 13 4 chr4 81362782 81368870 -120959477 - L1PA5 LINE L1 0 6154 11 3497 93 22 4 chr4 81368873 81369368 -120958979 - THE1B-int LTR MaLR -1075 505 2 1979 183 39 17 chr4 81369369 81369725 -120958622 - THE1B LTR MaLR 0 364 1 1776 160 36 0 chr4 81370501 81370776 -120957571 + AluSx SINE Alu 1 285 -27 1874 129 55 7 chr4 81370897 81371383 -120956964 - LTR9B LTR ERV1 -86 558 1 7330 145 51 18 chr4 81371384 81372846 -120955501 - HUERS-P3b LTR ERV1 -7 7411 5379 3173 102 8 23 chr4 81372853 81373324 -120955023 - HUERS-P3b LTR ERV1 -3882 3536 3073 2085 189 47 3 chr4 81373324 81373706 -120954641 + LTR8 LTR ERV1 1 399 -292 1229 78 30 6 chr4 81373706 81373872 -120954475 - HUERS-P3b LTR ERV1 -4760 2658 2489 1221 221 56 65 chr4 81373928 81374388 -120953959 - LTR10B LTR ERV1 -2 545 1 16843 215 45 45 chr4 81374388 81379189 -120949158 - LTR10B-int LTR ERV1 0 7399 2686 18541 41 7 2 chr4 81379193 81383281 -120945066 - L1PA4 LINE L1 0 6155 2048 704 201 14 14 chr4 81383281 81383425 -120944922 - LTR10B-int LTR ERV1 -6502 147 4 1327 211 49 73 chr4 81383425 81383895 -120944452 - LTR10B LTR ERV1 0 547 1 5046 134 28 9 chr4 81383895 81384773 -120943574 - BaEV-int LTR ERV1 -4927 2491 1534 2224 210 19 28 chr4 81384773 81385245 -120943102 + HUERS-P3b LTR ERV1 34 501 -6917 1053 155 63 8 chr4 81385352 81385562 -120942785 - LTR9B LTR ERV1 0 644 420 238 279 55 35 chr4 81386258 81386444 -120941903 + L2 LINE L2 3036 3270 -43 431 303 32 19 chr4 81387671 81387826 -120940521 - LTR33 LTR ERVL -350 171 15 1230 236 84 44 chr4 81388373 81388801 -120939546 - LTR2 LTR ERV1 0 449 5 302 83 0 21 chr4 81389209 81389257 -120939090 - MADE1 DNA Mariner -31 49 3 446 273 45 0 chr4 81390164 81390296 -120938051 - MER34B LTR ERV1 -187 378 241 246 118 75 161 chr4 81391391 81391484 -120936863 - MER34B LTR ERV1 -480 85 1 332 257 129 48 chr4 81393156 81393366 -120934981 - MERVL LTR ERVL -1147 4338 4112 1696 188 112 25 chr4 81395204 81395697 -120932650 + MER39 LTR ERV1 33 618 -89 277 282 100 0 chr4 81397477 81397587 -120930760 - LTR16A LTR ERVL -323 127 7 365 302 36 93 chr4 81398736 81399070 -120929277 + MLT1F1 LTR MaLR 247 561 -6 620 301 158 8 chr4 81500459 81500845 -120827502 - LTR16A LTR ERVL 0 450 7 317 291 96 61 chr4 81501852 81502227 -120826120 + MLT1E LTR MaLR 182 587 -6 2285 86 19 3 chr4 81503104 81503417 -120824930 + HERVK3 LTR ERVK 6924 7241 -2 2678 148 21 5 chr4 81503419 81503839 -120824508 + LTR3 LTR ERVK 1 427 -5 19211 110 19 2 chr4 81505086 81507821 -120820526 + HERVK3 LTR ERVK 3974 6755 -488 582 281 188 0 chr4 81510797 81511085 -120817262 + LTR16A LTR ERVL 7 348 -102 2724 169 60 18 chr4 81512632 81513187 -120815160 - MER39 LTR ERV1 -97 610 33 501 310 75 30 chr4 81515170 81515505 -120812842 + ERVL LTR ERVL 4275 4624 -1140 335 209 36 102 chr4 81515865 81516033 -120812314 + ERVL LTR ERVL 5185 5326 -328 638 299 64 38 chr4 81516170 81516514 -120811833 + LTR16B LTR ERVL 110 462 -2 244 140 43 151 chr4 81518016 81518109 -120810238 + MER34B LTR ERV1 3 85 -480 555 197 17 0 chr4 81518130 81518247 -120810100 + MER34B LTR ERV1 245 363 -202 244 140 43 151 chr4 81518581 81518674 -120809673 + MER34B LTR ERV1 3 85 -480 491 218 0 0 chr4 81518695 81518796 -120809551 + MER34B LTR ERV1 245 345 -220 243 0 0 0 chr4 81519023 81519050 -120809297 + (A)n Simple_repeat Simple_repeat 1 27 0 226 315 9 45 chr4 81520705 81520816 -120807531 + LTR33 LTR ERVL 40 146 -375 619 323 80 6 chr4 81522174 81522512 -120805835 + LTR16A LTR ERVL 1 363 -87 183 280 93 13 chr4 81523393 81523468 -120804879 - L2 LINE L2 -39 3274 3194 24318 106 42 20 chr4 81526817 81530450 -120797897 - HERVK3 LTR ERVK -3495 3748 36 2889 132 9 2 chr4 81530456 81530880 -120797467 - LTR3 LTR ERVK -5 427 1 283 229 100 0 chr4 81530904 81530974 -120797373 + L2 LINE L2 3194 3270 -43 2361 97 13 0 chr4 81531342 81531651 -120796696 + AluSp SINE Alu 1 313 0 271 250 40 30 chr4 81535611 81535711 -120792636 - LTR16B LTR ERVL -10 454 354 2213 104 0 0 chr4 81536154 81536443 -120791904 + AluY SINE Alu 1 289 -22 296 239 57 0 chr4 81537660 81537748 -120790599 + MLT1K LTR MaLR 488 580 -8 685 311 43 20 chr4 81538732 81539037 -120789310 - LTR16B LTR ERVL -13 451 140 329 294 116 38 chr4 81539219 81539512 -120788835 - ERVL LTR ERVL -414 5350 5035 415 267 86 16 chr4 81540052 81540241 -120788106 - ERVL LTR ERVL -982 4307 3840 2796 83 50 101 chr4 81541271 81541774 -120786573 - L1PB1 LINE L1 -1 6150 5674 594 156 16 25 chr4 81542423 81542545 -120785802 - LOR1b LTR ERV1 -1 460 340 820 161 7 14 chr4 81542572 81542715 -120785632 - LOR1a LTR ERV1 -355 142 1 533 123 0 12 chr4 81543382 81543463 -120784884 + AluJb SINE Alu 207 286 -26 5099 197 68 10 chr4 81545883 81547987 -120780360 - L1PA16 LINE L1 -20 6146 3929 478 266 87 11 chr4 81549689 81549873 -120778474 + LTR16A LTR ERVL 177 374 -76 333 322 43 17 chr4 81549932 81550047 -120778300 + HERV16 LTR ERVL 1 118 -4878 405 333 57 24 chr4 81550198 81550408 -120777939 + HERV16 LTR ERVL 1962 2178 -2818 814 342 80 10 chr4 81550477 81550875 -120777472 + HERV16 LTR ERVL 2294 2719 -2277 247 281 0 0 chr4 81551338 81551402 -120776945 - LTR16C LTR ERVL 0 491 428 479 289 36 31 chr4 81551456 81551650 -120776697 - LTR16C LTR ERVL -134 357 163 2178 108 3 0 chr4 81552033 81552321 -120776026 + AluSx SINE Alu 1 289 -23 296 301 121 0 chr4 81552474 81552557 -120775790 - HERV16 LTR ERVL -4901 95 3 501 286 48 43 chr4 81552559 81552930 -120775417 - LTR16B LTR ERVL 0 464 10 317 236 101 101 chr4 81553418 81553436 -120774911 - LTR16C LTR ERVL 0 491 474 2101 180 31 3 chr4 81553436 81553791 -120774556 - MLT1A1 LTR MaLR 0 365 1 317 236 101 101 chr4 81553791 81553920 -120774427 - LTR16C LTR ERVL -16 475 344 576 144 242 0 chr4 81554198 81554351 -120773996 + L1MA7 LINE L1 6101 6290 -1 799 282 101 17 chr4 81554372 81554670 -120773677 + HERV16 LTR ERVL 346 668 -4328 202 152 0 43 chr4 81555127 81555173 -120773174 + MIR SINE MIR 159 202 -60 287 297 174 37 chr4 81555612 81555716 -120772631 - LTR16B LTR ERVL -9 455 367 1794 201 135 18 chr4 81555716 81556168 -120772179 - MLT1D LTR MaLR 0 505 1 287 297 174 37 chr4 81556168 81556475 -120771872 - LTR16B LTR ERVL -97 367 21 341 266 150 24 chr4 81556622 81556829 -120771518 + L1MC4a LINE L1 5635 5867 -1941 931 237 49 78 chr4 81557398 81557807 -120770540 - MLT2C1 LTR ERVL 0 397 1 2789 239 84 21 chr4 81557807 81558828 -120769519 - ERVL-C1 LTR ERVL -1 5653 4590 * 11183 255 80 14 chr4 81558821 81562209 -120766138 - ERVL-C1 LTR ERVL -1778 3986 276 939 201 89 56 chr4 81562257 81562561 -120765786 - MLT2C1 LTR ERVL -83 314 1 503 198 47 19 chr4 81562801 81562907 -120765440 + MSTC LTR MaLR 1 109 -319 618 215 13 154 chr4 81563009 81563307 -120765040 + MLT1A1 LTR MaLR 44 299 -66 1020 224 100 0 chr4 81563307 81563557 -120764790 - AluJo SINE Alu -28 284 10 285 109 46 0 chr4 81563574 81563637 -120764710 + MSTD LTR MaLR 304 376 -2 3966 231 101 41 chr4 81563657 81564910 -120763437 + MLT1A1-int LTR MaLR 27 1355 -380 2310 182 17 43 chr4 81565493 81565959 -120762388 - LTR22A LTR ERVK 0 458 5 1493 186 70 18 chr4 81566448 81566775 -120761572 + MLT1A1-int LTR MaLR 1392 1735 0 802 218 84 105 chr4 81566775 81567176 -120761171 + MLT1A1 LTR MaLR 1 365 0 1771 207 48 90 chr4 81568336 81568598 -120759749 + L1MA7 LINE L1 5727 5998 -293 1751 170 14 3 chr4 81568598 81568881 -120759466 + AluSx SINE Alu 1 286 -26 1771 207 48 90 chr4 81568881 81569187 -120759160 + L1MA7 LINE L1 5998 6271 -20 1598 119 36 4 chr4 81569326 81569577 -120758770 - L1MA8 LINE L1 -465 5826 5568 2034 168 55 101 chr4 81569577 81570144 -120758203 + MLT2B3 LTR ERVL 1 541 -13 1538 135 48 66 chr4 81570156 81570531 -120757816 - L1MA8 LINE L1 -716 5575 5209 229 147 0 0 chr4 81570538 81570572 -120757775 + MLT2B3 LTR ERVL 197 230 -285 279 0 0 0 chr4 81570572 81570603 -120757744 + (CA)n Simple_repeat Simple_repeat 1 31 0 252 308 19 0 chr4 81570606 81570713 -120757634 + (CTCA)n Simple_repeat Simple_repeat 4 112 0 * 394 286 0 6 chr4 81570662 81570717 -120757630 + CT-rich Low_complexity Low_complexity 1 55 -112 2111 134 0 0 chr4 81570717 81571015 -120757332 - AluSx SINE Alu -14 298 1 394 286 0 6 chr4 81571015 81571127 -120757220 + CT-rich Low_complexity Low_complexity 55 167 0 * 455 260 23 0 chr4 81571032 81571205 -120757142 + (CTCA)n Simple_repeat Simple_repeat 2 178 0 305 323 0 0 chr4 81571194 81571361 -120756986 + CT-rich Low_complexity Low_complexity 1 167 0 * 1243 240 38 2 chr4 81571368 81571630 -120756717 + MLT2B3 LTR ERVL 225 488 -66 1206 186 42 0 chr4 81571634 81571849 -120756498 + MER7A DNA MER2_type 1 222 -124 4160 198 45 7 chr4 81571850 81572658 -120755689 + ERVL-B3 LTR ERVL 3019 3856 -1908 5389 126 180 8 chr4 81572699 81573722 -120754625 + Tigger3b DNA MER2_type 32 1230 -1 8964 163 80 5 chr4 81573722 81575241 -120753106 + ERVL-B3 LTR ERVL 3872 5584 -180 2188 121 0 0 chr4 81575241 81575531 -120752816 - AluSx SINE Alu -22 290 1 8964 163 80 5 chr4 81575531 81575720 -120752627 + ERVL-B3 LTR ERVL 5584 5757 -7 2669 186 28 58 chr4 81575720 81576291 -120752056 + MLT2B3 LTR ERVL 1 554 0 3504 212 167 12 chr4 81576333 81577442 -120750905 + Charlie1 DNA MER1_type 1480 2760 -1 240 363 124 0 chr4 81578843 81578956 -120749391 - L2 LINE L2 -242 3030 2904 504 205 335 20 chr4 81580198 81580398 -120747949 - MLT1A2 LTR MaLR -12 537 275 2041 112 11 3 chr4 81580758 81581043 -120747304 - AluSx SINE Alu -12 300 14 322 318 0 0 chr4 81581079 81581167 -120747180 - L1MC/D LINE L1 -2143 5665 5578 1013 242 47 0 chr4 81581311 81581567 -120746780 - L1MC4 LINE L1 -3 8039 7772 * 2342 195 183 35 chr4 81581561 81582137 -120746210 - L1MC4 LINE L1 -432 7376 6672 910 255 52 0 chr4 81582137 81582349 -120745998 - MER58A DNA MER1_type 0 224 2 2342 195 183 35 chr4 81582349 81582588 -120745759 - L1MC4 LINE L1 -1136 6672 6470 515 191 0 104 chr4 81582760 81582875 -120745472 - FRAM SINE Alu -8 168 66 633 188 0 0 chr4 81582893 81582994 -120745353 - AluSg SINE Alu -6 303 203 1532 100 0 10 chr4 81583127 81583327 -120745020 - AluSg SINE Alu -112 198 1 1553 142 196 33 chr4 81583377 81583708 -120744639 + Tigger2 DNA MER2_type 2334 2718 0 23 0 0 0 chr4 81583715 81583738 -120744609 + AT_rich Low_complexity Low_complexity 1 23 0 514 323 36 23 chr4 81585553 81585773 -120742574 + HERV16 LTR ERVL 2674 2896 -2100 * 1272 323 71 16 chr4 81585766 81586779 -120741568 - HERV16 LTR ERVL -3817 1179 101 33 0 0 0 chr4 81587958 81587991 -120740356 + AT_rich Low_complexity Low_complexity 1 33 0 4505 65 7 0 chr4 81587991 81588542 -120739805 - L1PA7 LINE L1 -24 6130 5576 1393 191 20 114 chr4 81588787 81589190 -120739157 - MLT1A1 LTR MaLR 0 365 1 983 223 34 59 chr4 81590572 81590877 -120737470 - MLT1A2 LTR MaLR -50 324 21 38892 83 14 7 chr4 81591054 81594844 -120733503 - L1PA6 LINE L1 -6 6148 2297 195 42 0 0 chr4 81594844 81594868 -120733479 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 38892 83 14 7 chr4 81594868 81597171 -120731176 - L1PA6 LINE L1 -3857 2297 11 6130 88 37 22 chr4 81598640 81599749 -120728598 + pTR5 LTR ERV1 741 2025 -413 358 167 52 143 chr4 81599749 81599903 -120728444 + LTR30 LTR ERV1 544 746 -33 1129 107 13 6 chr4 81599903 81600075 -120728272 + pTR5 LTR ERV1 142 392 -2046 713 133 115 0 chr4 81600977 81601090 -120727257 + FLAM_C SINE Alu 5 130 -3 318 236 101 101 chr4 81601598 81601727 -120726620 + LTR16C LTR ERVL 344 475 -16 1984 183 31 3 chr4 81601727 81602082 -120726265 + MLT1A1 LTR MaLR 1 365 0 318 236 101 101 chr4 81602082 81602100 -120726247 + LTR16C LTR ERVL 474 491 0 500 286 48 43 chr4 81602588 81602959 -120725388 + LTR16B LTR ERVL 10 464 0 296 301 121 0 chr4 81602961 81603044 -120725303 + HERV16 LTR ERVL 3 95 -4901 2101 132 3 0 chr4 81603197 81603485 -120724862 - AluSx SINE Alu -23 289 1 516 218 139 0 chr4 81603504 81603669 -120724678 - L1MC2 LINE L1 -19 6325 6138 * 6164 232 41 13 chr4 81603666 81605809 -120722538 + L1PA16 LINE L1 1 1555 -5294 13686 214 52 8 chr4 81606165 81611373 -120716974 + L1PA16 LINE L1 1394 6866 -3 1033 157 130 5 chr4 81611380 81611596 -120716751 - L1MC2 LINE L1 -194 6150 5908 668 194 113 0 chr4 81611597 81611757 -120716590 + MER58A DNA MER1_type 43 220 -4 1970 317 37 28 chr4 81612209 81612298 -120716049 + HERV16 LTR ERVL 596 683 -4313 2655 147 52 92 chr4 81612298 81612646 -120715701 + MLT2B3 LTR ERVL 1 318 -236 2460 87 0 3 chr4 81612646 81612956 -120715391 + AluY SINE Alu 1 309 -2 2655 147 52 92 chr4 81612956 81613184 -120715163 + MLT2B3 LTR ERVL 318 554 0 1970 317 37 28 chr4 81613184 81614040 -120714307 + HERV16 LTR ERVL 683 1550 -3446 973 316 93 25 chr4 81614225 81615010 -120713337 + MERVL LTR ERVL 3830 4943 -531 704 218 100 6 chr4 81615021 81615191 -120713156 + LTR16C LTR ERVL 306 491 0 936 174 36 36 chr4 81615333 81615528 -120712819 - L1PB4 LINE L1 0 6156 5962 734 176 65 0 chr4 81615528 81615681 -120712666 + L1 LINE L1 5127 5289 -857 272 283 50 101 chr4 81616038 81616197 -120712150 - MER102a DNA MER1_type 0 330 180 1583 218 57 40 chr4 81617003 81617457 -120710890 - LTR16B LTR ERVL -2 462 1 632 336 105 15 chr4 81618108 81618441 -120709906 - LTR16A LTR ERVL 0 450 88 669 363 25 14 chr4 81618485 81618766 -120709581 - LTR16C LTR ERVL -120 371 88 2154 126 3 0 chr4 81619022 81619316 -120709031 + AluSq SINE Alu 1 295 -18 225 0 0 0 chr4 81619423 81619448 -120708899 + (TTA)n Simple_repeat Simple_repeat 3 27 0 7444 42 0 0 chr4 81619448 81620955 -120707392 - L1PA4 LINE L1 -18 6137 4631 588 157 0 0 chr4 81621888 81621996 -120706351 - ALR/Alpha Satellite centromeric 0 171 64 434 349 96 11 chr4 81622202 81622577 -120705770 + L2 LINE L2 2476 2882 -432 783 266 78 51 chr4 81622586 81622920 -120705427 - LTR16C LTR ERVL 0 491 149 902 308 43 6 chr4 81622984 81623379 -120704968 - HERV16 LTR ERVL -1906 3090 2650 628 287 18 6 chr4 81623912 81624076 -120704271 + MER96 DNA MER1_type? 9 174 -1 1590 289 87 52 chr4 81624178 81624983 -120703364 + HERV16 LTR ERVL 561 1393 -3603 2070 117 0 3 chr4 81627088 81627393 -120700954 - AluY SINE Alu 0 304 1 2129 157 15 0 chr4 81628386 81628718 -120699629 + MER1B DNA MER1_type 1 337 0 401 221 239 12 chr4 81630085 81630248 -120698099 + MLT1L LTR MaLR 328 527 -88 1666 104 32 39 chr4 81630270 81630515 -120697832 - L1MA5 LINE L1 -6 6294 6050 1685 193 0 23 chr4 81630515 81630816 -120697531 - AluJo SINE Alu -18 294 1 1666 104 32 39 chr4 81630816 81630850 -120697497 - L1MA5 LINE L1 -250 6050 6017 561 182 36 0 chr4 81631948 81632058 -120696289 - Charlie1 DNA MER1_type -12 2749 2636 1166 216 74 15 chr4 81632604 81632928 -120695419 - MER2 DNA MER2_type 0 344 2 1709 187 7 0 chr4 81636194 81636483 -120691864 - AluJo SINE Alu -21 291 1 1890 157 3 0 chr4 81639113 81639400 -120688947 + AluJb SINE Alu 1 288 -24 302 227 182 0 chr4 81640354 81640464 -120687883 - LTR33 LTR ERVL 0 521 392 837 142 8 16 chr4 81640473 81640600 -120687747 + AluJb SINE Alu 2 127 -185 637 291 77 15 chr4 81640660 81640987 -120687360 - LTR33 LTR ERVL -174 347 1 240 253 53 13 chr4 81640991 81641066 -120687281 + MER5A DNA MER1_type 35 112 -77 384 292 154 15 chr4 81641156 81641423 -120686924 + MLT1J2 LTR MaLR 79 382 -68 314 278 117 45 chr4 81641427 81641693 -120686654 - L1MC5 LINE L1 -41 7920 7636 279 237 165 52 chr4 81641694 81641943 -120686404 - L1MC5 LINE L1 -406 7555 7279 258 247 82 0 chr4 81644059 81644132 -120684215 + MIR3 SINE MIR 111 189 -19 2368 154 15 18 chr4 81644810 81645199 -120683148 - MLT1B LTR MaLR -2 388 1 5525 79 12 32 chr4 81645224 81645896 -120682451 - L1PA6 LINE L1 -5 6149 5492 2168 115 0 3 chr4 81645896 81646192 -120682155 - AluY SINE Alu -16 295 1 5525 79 12 32 chr4 81646192 81646267 -120682080 - L1PA6 LINE L1 -662 5492 5417 38873 43 6 1 chr4 81646267 81651795 -120676552 - L1PA3 LINE L1 -22 6133 578 846 20 0 0 chr4 81651762 81651860 -120676487 - L1PA3 LINE L1 -6048 98 1 * 37859 94 13 11 chr4 81651861 81657293 -120671054 - L1P2 LINE L1 -702 5452 11 1313 186 231 0 chr4 81657382 81657672 -120670675 + MSTD LTR MaLR 1 357 -39 279 128 0 0 chr4 81658691 81658730 -120669617 + MSTD LTR MaLR 411 449 -8 33 0 0 0 chr4 81658739 81658772 -120669575 + AT_rich Low_complexity Low_complexity 1 33 0 439 307 123 27 chr4 81659010 81659310 -120669037 - L2 LINE L2 -5 3308 2980 1377 180 39 5 chr4 81659485 81659794 -120668553 + L1MD1 LINE L1 5293 5610 -632 1919 175 3 0 chr4 81659794 81660103 -120668244 + AluJb SINE Alu 3 312 0 21916 45 3 0 chr4 81660221 81663540 -120664807 - L1PA4 LINE L1 0 6155 2824 366 23 0 0 chr4 81663540 81663583 -120664764 + (TTA)n Simple_repeat Simple_repeat 3 45 0 21916 45 3 0 chr4 81663583 81663597 -120664750 - L1PA4 LINE L1 -3331 2824 2812 1985 47 17 0 chr4 81663597 81663818 -120664529 - L1PA4 LINE L1 -18 6137 5899 22075 70 5 0 chr4 81663818 81666621 -120661726 - L1PA4 LINE L1 -3326 2820 4 1829 147 38 20 chr4 81666621 81666967 -120661380 + L1MD1 LINE L1 5581 5932 -310 280 111 83 56 chr4 81667022 81667094 -120661253 + L1MD1 LINE L1 6169 6242 0 230 330 71 18 chr4 81667169 81667281 -120661066 + MIR3 SINE MIR 88 205 -3 180 77 0 0 chr4 81667674 81667700 -120660647 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 1727 253 56 68 chr4 81667856 81668444 -120659903 + MLT1G1 LTR MaLR 9 589 -6 772 217 94 17 chr4 81668460 81668640 -120659707 - LTR33 LTR ERVL -323 198 5 1119 279 8 0 chr4 81668844 81669102 -120659245 + MIR SINE MIR 3 262 0 920 270 132 34 chr4 81669519 81669967 -120658380 - LTR33 LTR ERVL -21 500 9 1140 316 67 23 chr4 81670160 81670593 -120657754 + MLT1K LTR MaLR 50 501 -87 1220 131 104 18 chr4 81671280 81671502 -120656845 - MER50 LTR ERV1 -12 722 482 1054 136 7 0 chr4 81671503 81671658 -120656689 - AluSx SINE Alu -8 304 149 1032 136 0 7 chr4 81671722 81671869 -120656478 - AluSx SINE Alu -167 146 1 2823 134 39 30 chr4 81671870 81672363 -120655984 - MER50 LTR ERV1 -237 497 1 9408 191 26 49 chr4 81672705 81674934 -120653413 - L1PA16 LINE L1 -9 6860 4609 823 110 14 7 chr4 81674934 81675066 -120653281 - MSTA LTR MaLR -227 137 1 9408 191 26 49 chr4 81675066 81676186 -120652161 - L1PA16 LINE L1 -2260 4609 3465 35494 77 8 94 chr4 81676188 81682928 -120645419 - L1PA5 LINE L1 0 6154 11 13779 161 26 9 chr4 81682937 81686256 -120642091 - L1PA16 LINE L1 -3371 3478 5 830 230 44 28 chr4 81686276 81686528 -120641819 + L1MA9 LINE L1 6027 6282 -30 26 0 0 0 chr4 81686661 81686687 -120641660 + AT_rich Low_complexity Low_complexity 1 26 0 3187 226 102 23 chr4 81686698 81687845 -120640502 + L1ME1 LINE L1 2253 3490 -2656 * 3444 227 85 15 chr4 81687839 81689051 -120639296 + L1ME1 LINE L1 4865 6162 -4 1274 174 82 31 chr4 81689202 81689495 -120638852 + AluJo SINE Alu 5 312 0 2306 294 58 19 chr4 81689834 81690804 -120637543 - HERV16 LTR ERVL -3251 1745 621 1941 162 10 0 chr4 81690804 81691094 -120637253 - AluSx SINE Alu -19 293 1 2306 294 58 19 chr4 81691094 81691375 -120636972 - HERV16 LTR ERVL -4375 621 352 319 305 19 0 chr4 81691476 81691581 -120636766 - HERV16 LTR ERVL -4793 203 97 1183 253 23 64 chr4 81691596 81691994 -120636353 - LTR16A LTR ERVL -5 451 65 189 0 0 0 chr4 81692032 81692053 -120636294 + (TG)n Simple_repeat Simple_repeat 1 21 0 2389 86 0 0 chr4 81692082 81692384 -120635963 + AluY SINE Alu 1 302 -9 218 213 0 0 chr4 81692486 81692533 -120635814 + T-rich Low_complexity Low_complexity 1 47 0 307 285 88 70 chr4 81692541 81692769 -120635578 - MIR SINE MIR -2 260 29 528 232 136 0 chr4 81693632 81693788 -120634559 + MER5A DNA MER1_type 4 183 -6 301 274 183 7 chr4 81693843 81693996 -120634351 - MIR SINE MIR -21 241 62 5651 129 119 85 chr4 81694148 81695384 -120632963 + pTR5 LTR ERV1 743 2020 -418 389 240 10 0 chr4 81695384 81695488 -120632859 + LTR30 LTR ERV1 539 643 -79 1409 114 14 9 chr4 81695490 81695710 -120632637 + pTR5 LTR ERV1 172 392 -2046 242 265 0 0 chr4 81695924 81695973 -120632374 + LTR16C LTR ERVL 443 491 0 691 190 9 0 chr4 81696436 81696552 -120631795 + MER45A DNA AcHobo 60 176 -2 697 289 60 8 chr4 81696947 81697182 -120631165 - MIR SINE MIR -1 261 15 22 0 0 0 chr4 81698998 81699020 -120629327 + AT_rich Low_complexity Low_complexity 1 22 0 1534 165 47 121 chr4 81699327 81699813 -120628534 + LTR7 LTR ERV1 1 450 0 2916 113 12 40 chr4 81700011 81700491 -120627856 + MER41B LTR ERV1 131 597 -38 2002 178 75 83 chr4 81700740 81701352 -120626995 + MER61B-int LTR ERV1 537 1143 -5533 831 153 16 0 chr4 81701397 81701521 -120626826 + MER61B-int LTR ERV1 1302 1427 -5249 7694 157 16 9 chr4 81701537 81702891 -120625456 + L1PA13 LINE L1 3968 5331 -815 238 146 122 0 chr4 81702891 81702932 -120625415 + AluSx SINE Alu 1 46 -257 6869 132 125 105 chr4 81702932 81704588 -120623759 + pTR5 LTR ERV1 750 2438 0 1914 135 0 0 chr4 81704591 81704857 -120623490 + AluSx SINE Alu 31 296 -16 6196 95 4 4 chr4 81704858 81705701 -120622646 + L1PA13 LINE L1 5321 6163 0 849 185 145 13 chr4 81705703 81705805 -120622542 + MER61B-int LTR ERV1 1252 1339 -6781 438 20 0 0 chr4 81705805 81705856 -120622491 + (TG)n Simple_repeat Simple_repeat 2 52 0 849 185 145 13 chr4 81705856 81706125 -120622222 + MER61B-int LTR ERV1 1339 1803 -6317 * 15006 190 74 81 chr4 81706116 81707736 -120620611 + MER61B-int LTR ERV1 698 2328 -2889 2814 77 6 8 chr4 81707736 81708099 -120620248 - L1PA6 LINE L1 0 6154 5793 15006 190 74 81 chr4 81708099 81711081 -120617266 + MER61B-int LTR ERV1 2328 5217 0 1850 122 28 25 chr4 81711081 81711421 -120616926 + MER61B LTR ERV1 1 425 0 637 281 116 46 chr4 81711449 81711777 -120616570 + MLT1J LTR MaLR 55 405 -106 738 225 7 0 chr4 81712709 81712851 -120615496 + L1PB4 LINE L1 5984 6126 -30 328 259 17 9 chr4 81712777 81712893 -120615454 + L1MA4A LINE L1 6182 6298 -5 * 2388 100 0 0 chr4 81712942 81713251 -120615096 - AluSc SINE Alu 0 309 1 647 180 12 18 chr4 81713330 81713497 -120614850 + C-rich Low_complexity Low_complexity 3 168 0 1429 179 37 10 chr4 81713604 81713900 -120614447 + L1MB8 LINE L1 5872 6175 -3 358 291 103 0 chr4 81714003 81714120 -120614227 + Charlie8 DNA MER1_type 73 201 -2216 203 244 0 0 chr4 81714249 81714294 -120614053 - L2 LINE L2 -5 3308 3264 214 324 111 62 chr4 81714341 81714647 -120613700 + L2 LINE L2 1631 1951 -1363 252 214 0 0 chr4 81714878 81714920 -120613427 - L2 LINE L2 -84 3229 3188 418 288 128 62 chr4 81715115 81715473 -120612874 - L2 LINE L2 -353 2961 2580 256 377 94 19 chr4 81719959 81720118 -120608229 - L2 LINE L2 -13 3259 3089 484 283 131 25 chr4 81720213 81720411 -120607936 - MIR SINE MIR -28 234 16 3259 149 33 24 chr4 81721745 81722289 -120606058 + MER44D DNA MER2_type 1 604 -1 197 291 0 36 chr4 81722313 81722368 -120605979 + L2 LINE L2 3206 3258 -14 1604 166 8 0 chr4 81723508 81723767 -120604580 - AluSx SINE Alu -12 300 40 202 116 70 0 chr4 81723783 81723826 -120604521 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2424 76 3 3 chr4 81723898 81724202 -120604145 + AluY SINE Alu 1 304 -7 406 290 53 41 chr4 81724204 81724373 -120603974 - MER5A DNA MER1_type -6 183 13 182 380 115 9 chr4 81724477 81724590 -120603757 + MIR SINE MIR 26 150 -112 2771 148 32 4 chr4 81724681 81725230 -120603117 + L1MA7 LINE L1 5610 6280 -11 22 35 0 0 chr4 81725230 81725259 -120603088 + AT_rich Low_complexity Low_complexity 1 29 0 336 250 25 75 chr4 81725260 81725380 -120602967 - LTR67 LTR ERVL -74 483 370 278 258 16 0 chr4 81727272 81727334 -120601013 - MER63 DNA MER1_type -274 786 724 1561 113 5 14 chr4 81727335 81727557 -120600790 + L1PA10 LINE L1 5948 6167 -1 511 226 29 0 chr4 81727600 81727702 -120600645 - MER63 DNA MER1_type -323 739 9 3065 165 22 49 chr4 81728903 81729130 -120599217 + L1MA9 LINE L1 5443 5675 -637 2442 99 0 0 chr4 81729130 81729442 -120598905 + AluSq SINE Alu 1 312 -1 3065 165 22 49 chr4 81729442 81729802 -120598545 + L1MA9 LINE L1 5675 6014 -298 2094 117 31 3 chr4 81731446 81731736 -120596611 - AluSq SINE Alu -15 298 1 2051 122 62 3 chr4 81731835 81732155 -120596192 + MER2 DNA MER2_type 7 345 0 637 305 128 45 chr4 81732269 81732830 -120595517 - L2 LINE L2 -436 2878 2271 570 134 21 0 chr4 81733926 81734023 -120594324 + L1MA10 LINE L1 6235 6333 -1 400 281 224 9 chr4 81734345 81734555 -120593792 - MIR SINE MIR -3 259 5 351 293 0 0 chr4 81735122 81735204 -120593143 - MER5A DNA MER1_type -104 85 4 322 348 108 23 chr4 81735823 81736176 -120592171 + L3 LINE CR1 810 1192 -385 229 70 70 0 chr4 81736301 81736344 -120592003 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 400 333 51 0 chr4 81736443 81736599 -120591748 - MIR SINE MIR -13 249 86 458 352 92 10 chr4 81736652 81737064 -120591283 + LTR16A LTR ERVL 2 447 -3 224 259 0 0 chr4 81737068 81737126 -120591221 + L3 LINE CR1 1246 1303 -274 408 287 54 0 chr4 81737260 81737389 -120590958 + L3 LINE CR1 1345 1480 -97 254 368 68 0 chr4 81738046 81738163 -120590184 - L2 LINE L2 0 3313 3189 824 159 0 14 chr4 81740036 81740181 -120588166 - FLAM_C SINE Alu 0 143 1 877 232 56 88 chr4 81740771 81741014 -120587333 - L1M1 LINE L1 -4147 3418 3196 1234 122 32 5 chr4 81741014 81741203 -120587144 - L1PB2 LINE L1 0 6151 5958 877 232 56 88 chr4 81741203 81741438 -120586909 - L1M1 LINE L1 -4369 3196 2955 1410 276 91 35 chr4 81741439 81742093 -120586254 + HERV16 LTR ERVL 2346 3043 -1953 1263 260 48 46 chr4 81742714 81743148 -120585199 + LTR16A LTR ERVL 16 450 0 682 308 91 25 chr4 81743148 81743423 -120584924 - LTR16C LTR ERVL -110 381 89 254 355 51 0 chr4 81743921 81744059 -120584288 + MIR SINE MIR 49 193 -69 3190 125 78 0 chr4 81744467 81745028 -120583319 + L1MA1 LINE L1 2858 3462 -4103 16734 149 22 7 chr4 81745132 81749350 -120578997 + L1MA1 LINE L1 3433 7721 0 1845 142 23 39 chr4 81749361 81749670 -120578677 + AluSx SINE Alu 1 304 -8 211 356 11 0 chr4 81750129 81750219 -120578128 - L3 LINE CR1 -58 1519 1429 227 149 64 21 chr4 81750292 81750339 -120578008 + LTR13 LTR ERVK 661 709 -298 1151 183 46 17 chr4 81750346 81750698 -120577649 - MLT2B1 LTR ERVL -42 478 1 375 179 51 0 chr4 81750701 81750779 -120577568 + LTR16A LTR ERVL 249 330 -120 1640 162 24 87 chr4 81750866 81751236 -120577111 + MLT2C1 LTR ERVL 1 347 -50 300 290 117 78 chr4 81751239 81751436 -120576911 - L2 LINE L2 -1420 1894 1706 234 0 0 0 chr4 81751436 81751462 -120576885 + (TG)n Simple_repeat Simple_repeat 2 27 0 300 290 117 78 chr4 81751462 81751753 -120576594 - L2 LINE L2 -1608 1706 1387 201 74 0 0 chr4 81752035 81752062 -120576285 + (T)n Simple_repeat Simple_repeat 1 27 0 2569 65 3 0 chr4 81752358 81752666 -120575681 + AluSp SINE Alu 1 309 -4 1705 141 37 34 chr4 81753474 81753801 -120574546 - AluJo SINE Alu 0 312 7 675 332 25 0 chr4 81753993 81754237 -120574110 + MIR SINE MIR 11 260 -2 1589 136 0 4 chr4 81756051 81756279 -120572068 - AluJb SINE Alu 0 312 86 183 139 0 0 chr4 81756799 81756835 -120571512 + (TTTTTA)n Simple_repeat Simple_repeat 6 41 0 792 158 25 0 chr4 81757161 81757281 -120571066 + AluJb SINE Alu 103 225 -87 301 308 13 0 chr4 81757281 81757359 -120570988 - MIR SINE MIR -182 80 2 320 283 124 9 chr4 81757387 81757500 -120570847 - MIR SINE MIR -135 127 2 369 0 0 0 chr4 81757973 81758014 -120570333 + (CA)n Simple_repeat Simple_repeat 2 42 0 872 168 91 77 chr4 81758331 81758539 -120569808 - MER2 DNA MER2_type -133 212 2 * 2234 214 83 80 chr4 81758539 81759255 -120569092 + MER21B LTR ERV1 21 738 -125 298 219 0 0 chr4 81759437 81759501 -120568846 - L1ME1 LINE L1 -5 6161 6098 2895 188 74 0 chr4 81759509 81760101 -120568246 - L1ME1 LINE L1 -176 5990 5355 626 321 86 33 chr4 81760167 81760881 -120567466 + L2 LINE L2 2285 3309 -4 509 281 164 22 chr4 81761407 81761638 -120566709 - LTR33 LTR ERVL -2 519 256 2620 42 0 6 chr4 81761741 81762054 -120566293 - AluY SINE Alu 0 311 1 451 279 16 8 chr4 81762318 81762440 -120565907 - MIR SINE MIR -128 134 12 195 69 0 0 chr4 81765493 81765522 -120562825 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 181 389 56 0 chr4 81765830 81765920 -120562427 + MIR3 SINE MIR 98 192 -16 318 253 0 36 chr4 81768149 81768232 -120560115 - MIR3 SINE MIR -10 198 119 367 283 18 0 chr4 81768353 81768466 -120559881 - LTR16C LTR ERVL 0 491 377 1120 259 98 22 chr4 81768470 81768879 -120559468 + LTR16A LTR ERVL 11 450 0 1830 271 35 26 chr4 81768879 81769226 -120559121 + HERV16 LTR ERVL 11 368 -4628 2262 142 37 3 chr4 81769226 81769579 -120558768 + MLT1A1 LTR MaLR 1 365 0 1830 271 35 26 chr4 81769579 81769854 -120558493 + HERV16 LTR ERVL 368 639 -4357 789 309 82 9 chr4 81769902 81770219 -120558128 + HERV16 LTR ERVL 729 1068 -3928 5731 146 31 38 chr4 81770252 81771233 -120557114 - L1MA7 LINE L1 0 6291 5307 1580 167 14 31 chr4 81771233 81771527 -120556820 - AluJo SINE Alu -23 289 1 5731 146 31 38 chr4 81771527 81772093 -120556254 - L1MA7 LINE L1 -984 5307 4739 14141 116 53 36 chr4 81772093 81772266 -120556081 - Tigger1 DNA MER2_type 0 2418 2249 2493 53 0 0 chr4 81772266 81772566 -120555781 + AluY SINE Alu 1 300 -11 14141 116 53 36 chr4 81772566 81774746 -120553601 - Tigger1 DNA MER2_type -169 2249 25 783 253 145 43 chr4 81774746 81775070 -120553277 - LTR18A LTR ERVL 0 357 1 14000 128 2 9 chr4 81775071 81777068 -120551279 - HERVL18 LTR ERVL 0 6047 4066 1997 152 0 3 chr4 81777069 81777358 -120550989 - HERVL18 LTR ERVL -1920 4127 3840 22699 166 19 9 chr4 81777365 81781037 -120547310 - HERVL18 LTR ERVL -2338 3709 2 823 267 142 19 chr4 81781044 81781362 -120546985 - LTR18A LTR ERVL 0 357 1 9194 179 45 22 chr4 81781389 81783389 -120544958 - L1MA7 LINE L1 -1404 4742 2699 2126 108 11 0 chr4 81783522 81783808 -120544539 + AluSq SINE Alu 9 297 -16 189 289 30 96 chr4 81783977 81784112 -120544235 - L2 LINE L2 -1862 1452 1327 237 350 58 15 chr4 81784123 81784260 -120544087 + MIR3 SINE MIR 36 178 -30 387 313 30 0 chr4 81784951 81785082 -120543265 - HAL1b LINE L1 -705 643 509 345 302 60 66 chr4 81785898 81786080 -120542267 - MIR3 SINE MIR -10 198 18 27277 94 12 6 chr4 81786554 81792950 -120535397 + L1PA7 LINE L1 2 6462 -7 185 336 168 7 chr4 81793027 81793164 -120535183 - MIR3 SINE MIR -29 179 21 * 580 258 82 26 chr4 81793131 81793279 -120535068 + MIR SINE MIR 58 221 -41 1475 190 31 28 chr4 81793279 81793568 -120534779 + AluJo SINE Alu 5 294 -18 580 258 82 26 chr4 81793568 81793613 -120534734 + MIR SINE MIR 221 262 0 351 306 0 0 chr4 81794009 81794081 -120534266 - MIR SINE MIR -106 102 31 305 301 48 0 chr4 81794263 81794346 -120534001 + MIR SINE MIR 24 110 -152 2869 10 0 0 chr4 81795489 81795802 -120532545 + AluYb8 SINE Alu 1 313 -5 186 43 0 0 chr4 81797046 81797069 -120531278 + (CATA)n Simple_repeat Simple_repeat 2 24 0 2077 149 0 3 chr4 81797404 81797705 -120530642 - AluSx SINE Alu -12 300 1 22 56 0 0 chr4 81797822 81797858 -120530489 + AT_rich Low_complexity Low_complexity 1 36 0 1398 48 0 43 chr4 81798326 81798514 -120529833 + L1PA6 LINE L1 5970 6149 -5 41 21 0 0 chr4 81798514 81798562 -120529785 + AT_rich Low_complexity Low_complexity 1 48 0 2384 69 0 10 chr4 81798655 81798961 -120529386 - AluY SINE Alu -8 303 1 251 328 40 0 chr4 81799758 81799883 -120528464 + LTR67 LTR ERVL 417 546 -11 2396 112 0 0 chr4 81800321 81800633 -120527714 - AluSx SINE Alu 0 312 1 787 248 49 48 chr4 81800681 81800991 -120527356 - MLT1E-int LTR MaLR -769 602 189 2589 166 30 22 chr4 81800991 81801065 -120527282 - L1MB3 LINE L1 -7 6176 6104 2247 72 20 7 chr4 81801065 81801358 -120526989 - AluY SINE Alu -14 297 1 2589 166 30 22 chr4 81801358 81801818 -120526529 - L1MB3 LINE L1 -79 6104 5638 787 248 49 48 chr4 81801818 81802007 -120526340 - MLT1E-int LTR MaLR -1182 189 2 1572 276 55 38 chr4 81802008 81802309 -120526038 - MLT1E LTR MaLR 0 593 276 2101 201 35 65 chr4 81802309 81802940 -120525407 + LTR9 LTR ERV1 1 612 0 1572 276 55 38 chr4 81802940 81803217 -120525130 - MLT1E LTR MaLR -317 276 5 519 248 15 22 chr4 81803280 81803417 -120524930 - MIR SINE MIR -10 252 117 323 244 98 0 chr4 81803700 81803782 -120524565 - L1ME4a LINE L1 -227 5894 5805 1610 210 35 46 chr4 81804236 81804779 -120523568 - L1ME2 LINE L1 -290 5874 5338 486 290 87 48 chr4 81805002 81805357 -120522990 - MLT1J LTR MaLR -96 415 47 460 266 52 39 chr4 81805437 81805670 -120522677 - L1MC5 LINE L1 -205 7756 7521 430 271 114 19 chr4 81805774 81806099 -120522248 + L1MC5 LINE L1 7501 7856 -105 24 32 0 0 chr4 81806135 81806166 -120522181 + AT_rich Low_complexity Low_complexity 1 31 0 2373 96 3 0 chr4 81806200 81806503 -120521844 - AluSp SINE Alu -9 304 1 192 77 0 0 chr4 81806921 81806947 -120521400 + (TTC)n Simple_repeat Simple_repeat 2 27 0 1988 135 13 13 chr4 81807020 81807332 -120521015 + AluSx SINE Alu 1 312 0 421 195 11 0 chr4 81807711 81807798 -120520549 + MLT1I LTR MaLR 315 402 -7 551 316 32 34 chr4 81809108 81809529 -120518818 + LTR33 LTR ERVL 38 521 0 543 225 308 0 chr4 81809700 81809869 -120518478 + MIR SINE MIR 2 222 -40 203 237 85 17 chr4 81809877 81809936 -120518411 + L2 LINE L2 3232 3294 -19 21 0 0 0 chr4 81811333 81811354 -120516993 + AT_rich Low_complexity Low_complexity 1 21 0 1677 211 3 3 chr4 81811451 81811754 -120516593 - AluJb SINE Alu -9 303 1 743 278 85 31 chr4 81811764 81812421 -120515926 - L1ME2 LINE L1 -280 5884 5189 447 228 39 8 chr4 81813550 81813677 -120514670 + MER103 DNA DNA 2 132 -34 4021 125 21 35 chr4 81813678 81814399 -120513948 - MER50 LTR ERV1 -23 711 1 315 0 0 0 chr4 81816148 81816183 -120512164 + (CA)n Simple_repeat Simple_repeat 2 36 0 2820 154 45 65 chr4 81816934 81817653 -120510694 + L1MB7 LINE L1 5271 5974 -210 * 7320 26 1 2 chr4 81817641 81818547 -120509800 - L1PA3 LINE L1 -907 5239 4333 7353 31 2 11 chr4 81818547 81819527 -120508820 + L1PA3 LINE L1 5219 6155 0 803 235 34 0 chr4 81819527 81819731 -120508616 + L1MB7 LINE L1 5963 6173 -11 877 251 15 0 chr4 81820146 81820349 -120507998 - MER58A DNA MER1_type 0 224 19 657 222 5 21 chr4 81820974 81821183 -120507164 + Charlie5 DNA MER1_type 1 199 -2413 * 1131 128 128 0 chr4 81821182 81821424 -120506923 + Charlie5 DNA MER1_type 2352 2624 0 2257 171 78 29 chr4 81822687 81823265 -120505082 + L1MC2 LINE L1 6137 7725 -21 394 319 0 35 chr4 81824050 81824166 -120504181 - L2 LINE L2 -7 3306 3195 296 196 0 0 chr4 81825328 81825384 -120502963 + L1ME3A LINE L1 5577 5632 -538 4081 138 37 31 chr4 81825472 81825913 -120502434 - L1MA7 LINE L1 -71 6220 5770 1722 183 7 20 chr4 81825913 81826219 -120502128 - AluJo SINE Alu -10 302 1 4081 138 37 31 chr4 81826219 81826610 -120501737 - L1MA7 LINE L1 -521 5770 5383 533 203 6 5 chr4 81826613 81826771 -120501576 + MER8 DNA MER2_type 1 239 0 283 0 0 0 chr4 81826774 81826808 -120501539 - L1MA7 LINE L1 -924 5379 5346 1381 239 122 24 chr4 81826810 81827304 -120501043 + L1ME3A LINE L1 5617 6158 -12 22 35 0 0 chr4 81827924 81827953 -120500394 + AT_rich Low_complexity Low_complexity 1 29 0 235 356 100 30 chr4 81828246 81828476 -120499871 - L2 LINE L2 -441 2873 2628 230 320 13 0 chr4 81828598 81828673 -120499674 + MIR SINE MIR 181 256 -6 573 256 111 71 chr4 81828808 81829187 -120499160 + L1ME3A LINE L1 5546 5939 -231 187 259 52 0 chr4 81829683 81829741 -120498606 + MIR SINE MIR 72 132 -76 398 211 98 68 chr4 81829897 81830030 -120498317 - MIR SINE MIR -111 151 15 639 200 31 0 chr4 81830098 81830228 -120498119 + MER94 DNA DNA 1 134 0 475 266 85 30 chr4 81830713 81830901 -120497446 - MIR SINE MIR -59 203 6 2050 125 40 0 chr4 81831021 81831318 -120497029 + AluSx SINE Alu 1 309 -3 307 255 145 63 chr4 81832395 81832650 -120495697 + L1ME4a LINE L1 5622 5897 -224 187 344 0 16 chr4 81835333 81835394 -120492953 + L3 LINE CR1 1293 1352 -225 222 194 65 65 chr4 81835398 81835460 -120492887 - L3 LINE CR1 -288 1289 1228 234 278 48 24 chr4 81837131 81837257 -120491090 + L1ME LINE L1 5667 5795 -326 23 33 0 0 chr4 81837678 81837708 -120490639 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr4 81837756 81837780 -120490567 + AT_rich Low_complexity Low_complexity 1 24 0 1199 223 3 0 chr4 81837830 81838113 -120490234 - AluSq SINE Alu 0 313 30 2217 94 3 10 chr4 81838812 81839109 -120489238 + AluSp SINE Alu 1 295 -18 1058 82 0 0 chr4 81839196 81839330 -120489017 + AluY SINE Alu 174 307 -4 1943 117 46 0 chr4 81839456 81839737 -120488610 + AluSx SINE Alu 5 298 -14 2187 113 7 7 chr4 81840129 81840430 -120487917 + AluSx SINE Alu 1 301 -11 824 249 0 5 chr4 81840477 81840662 -120487685 - AluSp SINE Alu -30 283 100 2052 86 26 59 chr4 81841476 81841779 -120486568 + AluSp SINE Alu 2 294 -19 1591 90 33 0 chr4 81842676 81842887 -120485460 - AluSp SINE Alu -19 294 77 2133 81 0 11 chr4 81843075 81843386 -120484961 + AluY SINE Alu 1 308 0 27 29 0 0 chr4 81843606 81843640 -120484707 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr4 81844107 81844129 -120484218 + AT_rich Low_complexity Low_complexity 1 22 0 1151 167 69 5 chr4 81845430 81845634 -120482713 + MER20 DNA MER1_type 2 218 -1 2045 164 50 12 chr4 81845849 81846271 -120482076 - L1MD3 LINE L1 -1 7994 7557 359 278 32 16 chr4 81847453 81847579 -120480768 + MLT1L LTR MaLR 480 607 -8 577 231 31 0 chr4 81847580 81847710 -120480637 - MER94 DNA DNA 0 134 1 329 195 39 52 chr4 81847723 81847800 -120480547 - Tigger3(Golem) DNA MER2_type -1 3028 2953 935 69 0 61 chr4 81848838 81848969 -120479378 - AluSg/x SINE Alu -19 293 171 552 221 30 8 chr4 81850198 81850329 -120478018 + L1MC/D LINE L1 5389 5522 -2286 1562 260 92 65 chr4 81850463 81851157 -120477190 - L1ME2 LINE L1 -224 6220 5547 450 0 0 0 chr4 81851157 81851207 -120477140 + (TA)n Simple_repeat Simple_repeat 2 51 0 2029 95 3 18 chr4 81851210 81851495 -120476852 - AluSx SINE Alu -31 281 1 1562 260 92 65 chr4 81851495 81851677 -120476670 - L1ME2 LINE L1 -898 5546 5370 2218 118 0 3 chr4 81851677 81851982 -120476365 - AluSx SINE Alu -8 304 1 1562 260 92 65 chr4 81851982 81852583 -120475764 - L1ME2 LINE L1 -1074 5370 4787 2266 96 6 10 chr4 81852583 81852897 -120475450 - AluSq SINE Alu 0 313 1 1562 260 92 65 chr4 81852897 81853451 -120474896 - L1ME2 LINE L1 -1657 4787 4127 183 80 0 0 chr4 81853451 81853476 -120474871 + (CATATA)n Simple_repeat Simple_repeat 2 26 0 1562 260 92 65 chr4 81853476 81853540 -120474807 - L1ME2 LINE L1 -2317 4127 4066 792 155 0 0 chr4 81853571 81853700 -120474647 - LTR40b LTR ERVL 0 462 334 385 309 94 28 chr4 81854021 81854309 -120474038 - L1ME2 LINE L1 -2400 4026 3720 3375 93 7 0 chr4 81854309 81854772 -120473575 - MER41A LTR ERV1 -88 466 1 1538 116 5 0 chr4 81854772 81854988 -120473359 - MER41A-int LTR ERV1 -2 5944 5728 352 179 32 74 chr4 81854983 81855078 -120473269 - MER41B-int LTR ERV1 -5855 91 1 * 756 133 98 14 chr4 81855078 81855221 -120473126 - MER41B LTR ERV1 0 635 481 1199 258 96 36 chr4 81855640 81856508 -120471839 - L1ME2 LINE L1 -3096 3330 2411 785 241 133 10 chr4 81856716 81857010 -120471337 - L1ME2 LINE L1 -2 6145 5816 280 175 35 0 chr4 81857005 81857062 -120471285 + L1ME2 LINE L1 5747 5805 -1963 * 2155 257 120 52 chr4 81857070 81858663 -120469684 - L1ME2 LINE L1 -1096 5033 3551 1695 116 0 72 chr4 81858663 81858940 -120469407 + AluY SINE Alu 1 257 -54 2155 257 120 52 chr4 81858940 81859293 -120469054 - L1ME2 LINE L1 -2578 3551 3224 1718 171 3 10 chr4 81859293 81859586 -120468761 - AluJo SINE Alu -19 293 3 2155 257 120 52 chr4 81859586 81859868 -120468479 - L1ME2 LINE L1 -2905 3224 2630 2454 73 0 0 chr4 81860092 81860395 -120467952 - AluY SINE Alu -8 303 1 261 125 21 0 chr4 81860600 81860648 -120467699 - L1ME2 LINE L1 -5176 731 683 * 371 167 56 0 chr4 81860642 81860714 -120467633 - L1ME2 LINE L1 -5670 756 681 1329 240 196 5 chr4 81860754 81861137 -120467210 - L1ME2 LINE L1 -5835 591 136 412 256 87 26 chr4 81861192 81861387 -120466960 - L1ME2 LINE L1 -4966 1153 947 555 260 19 0 chr4 81861402 81861556 -120466791 - L1ME2 LINE L1 -12 6152 5996 301 228 67 121 chr4 81861555 81861679 -120466668 - L1ME2 LINE L1 -573 5591 5475 * 1921 136 11 3 chr4 81861679 81861966 -120466381 + AluSx SINE Alu 1 289 -23 301 228 67 121 chr4 81861966 81861990 -120466357 - L1ME2 LINE L1 -689 5475 5451 184 293 0 0 chr4 81862973 81863014 -120465333 - L2 LINE L2 -18 3254 3214 267 361 83 0 chr4 81863063 81863171 -120465176 - MIR SINE MIR -61 147 31 2087 107 0 52 chr4 81863386 81863714 -120464633 + AluSx SINE Alu 1 311 -1 1565 88 114 4 chr4 81864164 81864391 -120463956 + AluSc SINE Alu 1 252 -57 328 103 17 52 chr4 81864496 81864554 -120463793 - AluJ/FLAM SINE Alu -228 74 19 282 85 43 21 chr4 81864549 81864596 -120463751 - Alu SINE Alu -260 48 1 * 2501 52 7 10 chr4 81864629 81864938 -120463409 + AluY SINE Alu 1 308 -3 250 244 109 76 chr4 81864994 81865113 -120463234 + L2 LINE L2 3185 3307 -6 21 57 0 0 chr4 81865253 81865288 -120463059 + AT_rich Low_complexity Low_complexity 1 35 0 2257 66 0 14 chr4 81865543 81865830 -120462517 + AluY SINE Alu 1 283 -28 889 230 0 0 chr4 81866681 81866855 -120461492 + FAM SINE Alu 1 174 -1 2808 63 0 8 chr4 81866856 81867221 -120461126 + L1PA8 LINE L1 5804 6165 -7 24 32 0 0 chr4 81867222 81867253 -120461094 + AT_rich Low_complexity Low_complexity 1 31 0 1626 186 0 29 chr4 81868195 81868506 -120459841 - AluJo SINE Alu -10 302 1 805 149 8 15 chr4 81868508 81868642 -120459705 - FLAM_A SINE Alu 0 133 1 180 0 0 0 chr4 81869015 81869035 -120459312 + (A)n Simple_repeat Simple_repeat 1 20 0 406 283 0 33 chr4 81869123 81869243 -120459104 - L2 LINE L2 -3 3310 3195 58 0 0 0 chr4 81869736 81869794 -120458553 + AT_rich Low_complexity Low_complexity 1 58 0 1734 141 57 7 chr4 81870365 81870648 -120457699 - AluJb SINE Alu -15 297 1 2353 220 71 9 chr4 81870789 81871629 -120456718 + L1ME LINE L1 4620 5510 -656 206 277 27 122 chr4 81871713 81871861 -120456486 - L2 LINE L2 -225 3047 2914 2033 131 3 0 chr4 81871863 81872160 -120456187 + AluSx SINE Alu 1 298 -14 698 150 0 79 chr4 81872195 81872335 -120456012 + FLAM_C SINE Alu 2 130 -3 21 0 0 31 chr4 81872339 81872351 -120455996 + AT_rich Low_complexity Low_complexity 1 12 -19 1612 196 7 10 chr4 81872351 81872642 -120455705 - AluJb SINE Alu -22 290 1 21 0 0 31 chr4 81872642 81872661 -120455686 + AT_rich Low_complexity Low_complexity 12 31 0 2152 77 11 3 chr4 81872852 81873162 -120455185 + AluSq SINE Alu 1 312 0 337 306 128 36 chr4 81873591 81873787 -120454560 - MIR SINE MIR 0 262 49 1996 132 3 3 chr4 81874314 81874602 -120453745 + AluSx SINE Alu 1 288 -24 25 0 0 0 chr4 81874603 81874628 -120453719 + AT_rich Low_complexity Low_complexity 1 25 0 1540 132 70 0 chr4 81875295 81875538 -120452809 + AluJo SINE Alu 33 292 -20 1873 173 16 0 chr4 81875538 81875844 -120452503 + AluJb SINE Alu 1 312 0 4010 113 15 7 chr4 81875898 81876500 -120451847 - L1MC1 LINE L1 -298 6035 5429 23 0 0 0 chr4 81876507 81876530 -120451817 + AT_rich Low_complexity Low_complexity 1 23 0 1264 105 205 70 chr4 81876573 81876831 -120451516 - AluSg SINE Alu -7 293 1 1909 144 7 0 chr4 81876864 81877148 -120451199 + AluSx SINE Alu 1 286 -26 204 67 0 0 chr4 81877150 81877180 -120451167 + (CAT)n Simple_repeat Simple_repeat 2 31 0 2233 117 7 0 chr4 81878314 81878613 -120449734 + AluSx SINE Alu 1 301 -11 1050 199 14 27 chr4 81878723 81878944 -120449403 + MER20 DNA MER1_type 2 219 0 529 279 142 10 chr4 81879205 81879409 -120448938 - MIR SINE MIR -4 258 28 2215 110 3 3 chr4 81879737 81880045 -120448302 + AluSx SINE Alu 1 308 -4 3015 209 82 103 chr4 81880113 81880884 -120447463 + L1ME LINE L1 3559 4344 -1802 2321 89 10 0 chr4 81880884 81881187 -120447160 - AluSp SINE Alu -7 306 1 3015 209 82 103 chr4 81881187 81881264 -120447083 + L1ME LINE L1 4344 4421 -1725 1801 142 129 43 chr4 81881264 81881658 -120446689 + MSTA LTR MaLR 1 428 0 3015 209 82 103 chr4 81881658 81881873 -120446474 + L1ME LINE L1 4421 4639 -1507 1002 133 7 0 chr4 81881873 81882023 -120446324 - L1PA16 LINE L1 -9 6157 6007 3015 209 82 103 chr4 81882023 81882151 -120446196 + L1ME LINE L1 4639 4768 -1378 1685 143 162 19 chr4 81882151 81882522 -120445825 + MSTA LTR MaLR 1 424 -4 3015 209 82 103 chr4 81882522 81882668 -120445679 + L1ME LINE L1 4768 4869 -1277 1629 140 18 85 chr4 81882668 81882996 -120445351 + AluJb SINE Alu 2 307 -5 3015 209 82 103 chr4 81882996 81883110 -120445237 + L1ME LINE L1 4869 4984 -1162 2840 166 36 4 chr4 81883141 81883635 -120444712 + Tigger7 DNA MER2_type 11 520 -213 406 149 0 45 chr4 81883641 81883708 -120444639 + Tigger7 DNA MER2_type 2423 2486 -1 1704 193 100 29 chr4 81883714 81883913 -120444434 + L1ME LINE L1 4990 5173 -993 1574 154 67 30 chr4 81883913 81884212 -120444135 + AluJo SINE Alu 1 310 -2 1704 193 100 29 chr4 81884212 81884572 -120443775 + L1ME LINE L1 5173 5603 -563 1595 186 24 3 chr4 81884572 81884863 -120443484 + AluJb SINE Alu 1 297 -15 1704 193 100 29 chr4 81884863 81885006 -120443341 + L1ME LINE L1 5603 5734 -432 1363 180 65 0 chr4 81885015 81885260 -120443087 + AluJo SINE Alu 1 261 -51 2283 108 3 0 chr4 81885296 81885593 -120442754 + AluSq SINE Alu 5 302 -11 1420 158 35 76 chr4 81886089 81886406 -120441941 + AluJo SINE Alu 1 304 -8 780 199 6 45 chr4 81887626 81887782 -120440565 + FAM SINE Alu 14 163 -22 447 329 62 22 chr4 81888504 81888729 -120439618 - MIR SINE MIR -10 252 19 581 285 109 26 chr4 81888962 81889492 -120438855 + L1MC4a LINE L1 5255 5828 -1980 2129 112 7 0 chr4 81889494 81889789 -120438558 + AluSp SINE Alu 4 300 -13 1958 182 163 15 chr4 81889798 81890015 -120438332 + L1MB5 LINE L1 5541 5725 -449 2189 114 0 3 chr4 81890015 81890313 -120438034 + AluSx SINE Alu 1 297 -15 1958 182 163 15 chr4 81890313 81890629 -120437718 + L1MB5 LINE L1 5725 6153 -21 943 225 84 0 chr4 81890819 81891032 -120437315 - MER8 DNA MER2_type -8 231 1 1290 233 133 4 chr4 81891243 81891693 -120436654 + Charlie4a DNA MER1_type 1 508 0 2365 81 3 3 chr4 81892013 81892309 -120436038 + AluSp SINE Alu 1 296 -17 199 301 35 44 chr4 81892550 81892663 -120435684 + L2 LINE L2 2750 2861 -453 210 300 0 0 chr4 81892781 81892841 -120435506 - L2 LINE L2 0 3272 3213 645 102 0 0 chr4 81892911 81892999 -120435348 - AluY SINE Alu -177 134 47 1354 79 0 0 chr4 81892999 81893164 -120435183 + AluSc SINE Alu 132 296 -13 381 221 0 12 chr4 81893176 81893262 -120435085 + FLAM_A SINE Alu 43 127 -6 219 359 47 23 chr4 81893524 81893652 -120434695 - L2 LINE L2 -434 2880 2750 408 263 143 0 chr4 81893693 81893839 -120434508 + MIR SINE MIR 57 219 -43 379 156 35 32 chr4 81893875 81894048 -120434299 + MER58C DNA MER1_type 67 206 -9 2368 93 6 10 chr4 81894050 81894363 -120433984 + AluSx SINE Alu 1 312 0 212 365 7 35 chr4 81894429 81894574 -120433773 - L2 LINE L2 -566 2748 2608 684 219 73 0 chr4 81894892 81895056 -120433291 - MIR SINE MIR -31 231 56 232 270 34 34 chr4 81895053 81895142 -120433205 + MIR SINE MIR 119 207 -55 * 28 0 0 0 chr4 81896061 81896089 -120432258 + AT_rich Low_complexity Low_complexity 1 28 0 3065 95 19 41 chr4 81896383 81896899 -120431448 - L1MA5A LINE L1 -4 6293 5789 1929 84 64 61 chr4 81897138 81897434 -120430913 + AluSg SINE Alu 1 297 -13 238 222 69 0 chr4 81897618 81897690 -120430657 + L1MB8 LINE L1 3953 4029 -2117 3504 216 43 48 chr4 81897759 81898033 -120430314 + L1MB8 LINE L1 4012 4286 -1892 2156 118 17 0 chr4 81898033 81898329 -120430018 + AluSg SINE Alu 1 301 -9 3504 216 43 48 chr4 81898329 81900271 -120428076 + L1MB8 LINE L1 4286 6178 0 325 207 55 69 chr4 81901620 81901765 -120426582 + MLT1J2 LTR MaLR 243 385 -65 25 51 0 0 chr4 81902130 81902169 -120426178 + AT_rich Low_complexity Low_complexity 1 39 0 300 289 178 40 chr4 81903336 81903561 -120424786 - MIR SINE MIR -6 256 1 341 332 99 43 chr4 81904471 81904793 -120423554 - L1M2 LINE L1 -5643 1206 867 * 361 327 67 79 chr4 81904666 81904920 -120423427 + L1M2 LINE L1 676 932 -5917 234 0 0 0 chr4 81904920 81904946 -120423401 + (CA)n Simple_repeat Simple_repeat 2 27 0 361 327 67 79 chr4 81904946 81905428 -120422919 + L1M2 LINE L1 932 1403 -5446 * 419 269 101 117 chr4 81905394 81905966 -120422381 - L1M2 LINE L1 -5707 1142 580 387 342 34 20 chr4 81907659 81907808 -120420539 - L2 LINE L2 -1 3271 3121 2217 94 3 10 chr4 81908416 81908713 -120419634 + AluSp SINE Alu 1 295 -18 959 81 29 7 chr4 81908800 81908936 -120419411 + AluSp/q SINE Alu 175 313 0 283 308 13 13 chr4 81908946 81909024 -120419323 - MIR SINE MIR -156 106 29 1161 269 66 42 chr4 81909609 81910066 -120418281 + LTR33 LTR ERVL 6 473 -48 241 184 0 0 chr4 81910635 81910673 -120417674 + MER58 DNA MER1_type 6 43 -172 256 343 130 12 chr4 81910953 81911122 -120417225 + MIR3 SINE MIR 19 207 -1 1729 165 25 3 chr4 81913589 81913910 -120414437 - MER2 DNA MER2_type -16 329 2 398 265 152 40 chr4 81914685 81914836 -120413511 - MIR3 SINE MIR -36 172 5 491 309 128 77 chr4 81915047 81915877 -120412470 + L2 LINE L2 2177 3053 -219 602 235 59 44 chr4 81916441 81916645 -120411702 - MLT1J LTR MaLR -23 488 282 277 292 46 0 chr4 81916645 81916710 -120411637 + MER91A DNA MER1_type 7 74 -122 205 152 0 0 chr4 81917240 81917273 -120411074 + CT-rich Low_complexity Low_complexity 2 34 0 2054 111 0 0 chr4 81917682 81917952 -120410395 - AluSx SINE Alu -42 270 1 238 303 0 0 chr4 81918898 81918964 -120409383 - MER103 DNA DNA -2 164 99 2263 104 14 0 chr4 81919437 81919734 -120408613 + AluSx SINE Alu 1 301 -11 1697 219 98 48 chr4 81919800 81920277 -120408070 - MER20B DNA MER1_type -3 780 254 2448 79 3 0 chr4 81920277 81920582 -120407765 + AluSp SINE Alu 1 306 -7 1697 219 98 48 chr4 81920582 81920816 -120407531 - MER20B DNA MER1_type -529 254 33 236 261 0 29 chr4 81921094 81921163 -120407184 - MER20B DNA MER1_type -259 524 458 247 321 196 9 chr4 81921181 81921293 -120407054 - MIR SINE MIR -128 134 2 218 366 76 8 chr4 81921773 81921904 -120406443 + L2 LINE L2 3173 3312 -1 240 345 56 14 chr4 81922000 81922142 -120406205 + MIR SINE MIR 100 247 -15 2443 86 0 0 chr4 81922152 81922455 -120405892 + AluSg SINE Alu 1 303 -7 216 235 176 0 chr4 81923474 81923542 -120404805 + L2 LINE L2 3234 3313 0 456 260 40 40 chr4 81923630 81923780 -120404567 - L2 LINE L2 -1 3271 3122 1507 187 73 4 chr4 81924334 81924487 -120403860 - AluJb SINE Alu -20 292 151 308 23 45 0 chr4 81924487 81924531 -120403816 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 1507 187 73 4 chr4 81924531 81924650 -120403697 - AluJb SINE Alu -161 151 1 23 78 0 0 chr4 81924804 81924855 -120403492 + AT_rich Low_complexity Low_complexity 1 51 0 332 273 43 80 chr4 81924883 81925070 -120403277 - MIR SINE MIR -42 220 41 1072 174 0 0 chr4 81925283 81925450 -120402897 + FRAM SINE Alu 1 167 -9 2191 117 0 10 chr4 81925554 81925861 -120402486 + AluSx SINE Alu 1 304 -8 28 22 0 22 chr4 81926264 81926291 -120402056 + AT_rich Low_complexity Low_complexity 1 28 -17 1509 187 21 28 chr4 81926291 81926580 -120401767 - AluJb SINE Alu -25 287 1 28 22 0 22 chr4 81926580 81926598 -120401749 + AT_rich Low_complexity Low_complexity 28 45 0 2357 90 0 0 chr4 81926598 81926888 -120401459 - AluSg SINE Alu -20 290 1 407 299 24 24 chr4 81927435 81927562 -120400785 + MIR3 SINE MIR 45 171 -37 187 267 22 0 chr4 81927583 81927628 -120400719 + L2 LINE L2 3268 3313 0 1098 169 0 12 chr4 81927698 81927870 -120400477 + AluJ SINE Alu 1 170 -142 523 130 13 0 chr4 81927870 81927947 -120400400 - AluSp SINE Alu -133 180 103 476 120 141 11 chr4 81927954 81928046 -120400301 + AluJ SINE Alu 170 273 -39 183 42 0 0 chr4 81928058 81928082 -120400265 + (CAA)n Simple_repeat Simple_repeat 1 24 0 228 237 26 0 chr4 81928520 81928596 -120399751 + L1ME4a LINE L1 5961 6038 -83 21 57 0 0 chr4 81928630 81928665 -120399682 + AT_rich Low_complexity Low_complexity 1 35 0 2119 82 69 10 chr4 81928665 81928956 -120399391 + AluSp SINE Alu 1 308 -5 2295 101 0 0 chr4 81929063 81929359 -120398988 - AluSg SINE Alu -14 296 1 253 213 0 0 chr4 81929522 81929569 -120398778 + L2 LINE L2 3226 3272 0 275 286 10 0 chr4 81930311 81930409 -120397938 + GA-rich Low_complexity Low_complexity 1 99 0 845 195 23 17 chr4 81932036 81932210 -120396137 + MER5A DNA MER1_type 1 175 -14 705 248 38 53 chr4 81932689 81932955 -120395392 + MIR SINE MIR 1 262 0 1900 168 7 0 chr4 81932976 81933267 -120395080 - AluJb SINE Alu -19 293 1 1509 207 31 11 chr4 81933347 81933729 -120394618 - L1M4 LINE L1 -866 5280 4891 593 250 133 15 chr4 81934032 81934228 -120394119 + MIR SINE MIR 33 251 -11 588 215 126 0 chr4 81934329 81934464 -120393883 - FRAM SINE Alu -14 152 1 207 100 0 0 chr4 81934466 81934496 -120393851 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1447 165 60 23 chr4 81934500 81934766 -120393581 - AluJb SINE Alu -32 280 5 1590 129 0 9 chr4 81934773 81935006 -120393341 - AluSg/x SINE Alu 0 310 80 1512 198 26 23 chr4 81937444 81937752 -120390595 + AluJo SINE Alu 4 312 0 1561 163 0 33 chr4 81938024 81938300 -120390047 + AluSx SINE Alu 1 267 -45 23 0 0 0 chr4 81938621 81938644 -120389703 + AT_rich Low_complexity Low_complexity 1 23 0 881 160 0 0 chr4 81939730 81939861 -120388486 + FLAM_C SINE Alu 1 131 -2 1346 118 45 64 chr4 81939885 81940105 -120388242 + AluJb SINE Alu 80 295 -17 1926 156 0 3 chr4 81940109 81940410 -120387937 + AluJo SINE Alu 1 300 -12 689 257 118 0 chr4 81940627 81940814 -120387533 - MER63A DNA MER1_type 0 210 2 347 271 0 0 chr4 81941610 81941695 -120386652 + MIR SINE MIR 177 261 -1 309 188 0 62 chr4 81942229 81942309 -120386038 - MER116 DNA Mariner 0 80 6 452 254 110 0 chr4 81942909 81943027 -120385320 - MIR SINE MIR -7 255 125 2047 109 10 26 chr4 81943030 81943332 -120385015 + AluSx SINE Alu 1 297 -15 574 213 64 7 chr4 81943426 81943567 -120384780 - MIR SINE MIR -16 246 98 287 269 21 21 chr4 81943599 81943692 -120384655 + HERVL LTR ERVL 3077 3169 -2485 2342 100 3 0 chr4 81944068 81944378 -120383969 + AluSq SINE Alu 1 311 -2 573 267 10 64 chr4 81944508 81944710 -120383637 + LTR16A LTR ERVL 119 309 -141 1208 246 37 100 chr4 81944860 81945027 -120383320 + LTR33A LTR ERVL 62 238 -285 2296 79 0 0 chr4 81945027 81945336 -120383011 - AluY SINE Alu 0 309 1 1208 246 37 100 chr4 81945336 81945659 -120382688 + LTR33A LTR ERVL 238 522 -1 463 307 72 18 chr4 81946279 81946556 -120381791 + HERVL LTR ERVL 821 1112 -4652 323 194 0 0 chr4 81946687 81946754 -120381593 - Charlie5 DNA MER1_type 0 2624 2558 311 148 0 82 chr4 81946775 81946836 -120381511 - Charlie5 DNA MER1_type -2556 56 1 792 300 74 66 chr4 81947137 81947634 -120380713 + LTR33A LTR ERVL 23 523 0 573 267 10 64 chr4 81947985 81948187 -120380160 - LTR16A LTR ERVL -141 309 119 2342 100 3 0 chr4 81948317 81948627 -120379720 - AluSq SINE Alu -2 311 1 287 269 21 21 chr4 81949003 81949096 -120379251 - HERVL LTR ERVL -2485 3169 3077 574 213 64 7 chr4 81949128 81949269 -120379078 + MIR SINE MIR 98 246 -16 2110 126 10 0 chr4 81949363 81949657 -120378690 - AluSx SINE Alu -15 297 1 568 325 64 22 chr4 81949782 81950093 -120378254 + LTR16C LTR ERVL 168 491 0 918 218 109 25 chr4 81951026 81951310 -120377037 - LTR16A LTR ERVL 0 450 143 258 300 40 27 chr4 81951479 81951629 -120376718 + HERVL LTR ERVL 5190 5341 -313 513 297 23 18 chr4 81952037 81952256 -120376091 + LTR16C LTR ERVL 257 476 -15 228 314 143 19 chr4 81952840 81952945 -120375402 + L2 LINE L2 3151 3268 -4 462 303 92 37 chr4 81953022 81953316 -120375031 - MLT1I LTR MaLR -2 407 98 315 0 0 0 chr4 81954564 81954599 -120373748 + (A)n Simple_repeat Simple_repeat 1 35 0 25 31 0 0 chr4 81958963 81958995 -120369352 + AT_rich Low_complexity Low_complexity 1 32 0 1474 198 26 23 chr4 81961815 81962123 -120366224 + AluJo SINE Alu 4 312 0 1552 163 0 33 chr4 81962395 81962671 -120365676 + AluSx SINE Alu 1 267 -45 23 0 0 0 chr4 81962992 81963015 -120365332 + AT_rich Low_complexity Low_complexity 1 23 0 871 160 0 0 chr4 81964101 81964232 -120364115 + FLAM_C SINE Alu 1 131 -2 1328 118 45 64 chr4 81964256 81964476 -120363871 + AluJb SINE Alu 80 295 -17 1903 156 0 3 chr4 81964480 81964781 -120363566 + AluJo SINE Alu 1 300 -12 689 257 118 0 chr4 81964998 81965185 -120363162 - MER63A DNA MER1_type 0 210 2 347 271 0 0 chr4 81965981 81966066 -120362281 + MIR SINE MIR 177 261 -1 309 188 0 62 chr4 81966600 81966680 -120361667 - MER116 DNA Mariner 0 80 6 677 271 100 19 chr4 81967280 81967401 -120360946 - MIR SINE MIR -7 255 145 2295 82 16 22 chr4 81967401 81967716 -120360631 + AluSq SINE Alu 1 313 0 677 271 100 19 chr4 81967716 81967804 -120360543 - MIR SINE MIR -117 145 29 1307 272 76 40 chr4 81968385 81968859 -120359488 + LTR33 LTR ERVL 2 492 -29 266 241 74 0 chr4 81969415 81969469 -120358878 + MER58 DNA MER1_type 6 63 -152 264 343 130 12 chr4 81969733 81969902 -120358445 + MIR3 SINE MIR 19 207 -1 247 341 124 28 chr4 81971771 81971988 -120356359 + MLT1L LTR MaLR 201 438 -177 * 382 297 39 16 chr4 81971981 81972109 -120356238 + MLT1J LTR MaLR 377 507 -4 224 315 17 16 chr4 81972397 81972521 -120355826 + MIR SINE MIR 34 162 -66 265 306 116 16 chr4 81972799 81972920 -120355427 - L2 LINE L2 -237 3035 2903 327 359 138 0 chr4 81972972 81973167 -120355180 - L2 LINE L2 -571 2743 2522 21 0 0 0 chr4 81973728 81973749 -120354598 + AT_rich Low_complexity Low_complexity 1 21 0 333 248 0 106 chr4 81973833 81973994 -120354353 - L3 LINE CR1 -214 1363 1220 438 238 140 8 chr4 81974513 81974702 -120353645 - L1ME4a LINE L1 -251 5870 5663 21 0 0 0 chr4 81974836 81974857 -120353490 + AT_rich Low_complexity Low_complexity 1 21 0 296 288 68 8 chr4 81974909 81975027 -120353320 - L3 LINE CR1 -822 755 631 715 263 98 40 chr4 81975147 81975474 -120352873 + LTR16A LTR ERVL 105 450 0 2257 108 3 0 chr4 81977533 81977839 -120350508 - AluSg1 SINE Alu 0 309 3 215 299 62 10 chr4 81977864 81977961 -120350386 - MIR SINE MIR -50 212 111 2394 83 3 0 chr4 81978595 81978895 -120349452 + AluSp SINE Alu 1 301 -12 238 240 78 69 chr4 81979512 81979631 -120348716 - MIR SINE MIR -70 138 29 1792 148 7 33 chr4 81980212 81980515 -120347832 + AluJo SINE Alu 2 296 -16 386 287 208 15 chr4 81980603 81980805 -120347542 + MIR SINE MIR 2 242 -20 1543 144 37 130 chr4 81980813 81981189 -120347158 + MER7A DNA MER2_type 1 339 -7 456 320 53 20 chr4 81981712 81981862 -120346485 + L2 LINE L2 3116 3270 -2 359 259 113 16 chr4 81982590 81982717 -120345630 - MIR SINE MIR -67 141 3 256 301 81 17 chr4 81982967 81983140 -120345207 + L1ME LINE L1 5612 5795 -326 26 50 0 0 chr4 81983551 81983591 -120344756 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr4 81983639 81983663 -120344684 + AT_rich Low_complexity Low_complexity 1 24 0 2230 128 0 0 chr4 81983713 81984025 -120344322 - AluSx SINE Alu 0 312 1 640 155 23 0 chr4 81984054 81984183 -120344164 + L1MA6 LINE L1 6165 6296 -4 34 0 0 0 chr4 81985237 81985271 -120343076 + AT_rich Low_complexity Low_complexity 1 34 0 412 204 156 72 chr4 81985589 81985756 -120342591 + MER5A DNA MER1_type 9 189 0 447 254 32 76 chr4 81985764 81985949 -120342398 + MER5B DNA MER1_type 1 177 -1 1969 133 0 17 chr4 81987297 81987591 -120340756 - AluSx SINE Alu -23 289 1 337 305 123 21 chr4 81989776 81990089 -120338258 + L1ME LINE L1 5378 5653 -468 2331 68 7 7 chr4 81990482 81990776 -120337571 - AluY SINE Alu -17 294 1 2997 212 86 30 chr4 81991050 81992013 -120336334 + L1MDa LINE L1 991 2016 -4524 1473 158 0 8 chr4 81992013 81992247 -120336100 + AluJo SINE Alu 1 232 -80 2997 212 86 30 chr4 81992247 81992305 -120336042 + L1MDa LINE L1 2016 2069 -4471 3181 244 134 55 chr4 81992499 81993512 -120334835 + L1M4 LINE L1 2609 3541 -2605 1994 148 0 0 chr4 81993512 81993795 -120334552 + AluSx SINE Alu 1 283 -29 216 0 0 0 chr4 81993798 81993822 -120334525 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 3181 244 134 55 chr4 81993822 81995286 -120333061 + L1M4 LINE L1 3542 5286 -860 1965 78 99 0 chr4 81995353 81995636 -120332711 - AluY SINE Alu 0 311 1 21 0 0 0 chr4 81995945 81995966 -120332381 + AT_rich Low_complexity Low_complexity 1 21 0 330 359 138 0 chr4 81996490 81996685 -120331662 + L2 LINE L2 2522 2743 -571 264 306 116 16 chr4 81996737 81996858 -120331489 + L2 LINE L2 2903 3035 -237 233 315 17 16 chr4 81997136 81997260 -120331087 - MIR SINE MIR -66 142 34 381 297 39 16 chr4 81997548 81997676 -120330671 - MLT1J LTR MaLR -4 507 377 240 347 123 27 chr4 81997669 81997888 -120330459 - MLT1L LTR MaLR -177 438 199 * 600 40 0 0 chr4 82099136 82099211 -120229136 + (GGGAGA)n Simple_repeat Simple_repeat 3 77 0 350 291 89 39 chr4 82099476 82099655 -120228692 - HAL1 LINE L1 -83 2424 2237 364 271 6 96 chr4 82099957 82100134 -120228213 - HAL1b LINE L1 -441 907 747 2246 113 0 0 chr4 82100184 82100476 -120227871 + AluSq SINE Alu 1 292 -21 350 274 23 15 chr4 82100694 82100868 -120227479 - HAL1 LINE L1 -614 1893 1644 382 266 99 16 chr4 82100933 82101125 -120227222 - HAL1 LINE L1 -1100 1407 1200 1362 216 41 41 chr4 82101595 82101960 -120226387 + MLT1A1 LTR MaLR 1 365 0 2256 143 22 6 chr4 82102031 82102389 -120225958 + THE1B LTR MaLR 1 364 0 8719 111 10 39 chr4 82102389 82102798 -120225549 + THE1B-int LTR MaLR 1 420 -1160 2377 107 3 0 chr4 82102798 82103107 -120225240 - AluSp SINE Alu -2 311 2 8719 111 10 39 chr4 82103107 82104100 -120224247 + THE1B-int LTR MaLR 420 1362 -218 422 320 111 51 chr4 82104303 82104637 -120223710 + L3b LINE CR1 1216 1569 -14 418 348 7 0 chr4 82104660 82104798 -120223549 - MIR SINE MIR -1 261 123 1538 184 57 0 chr4 82105269 82105623 -120222724 + MLT2B1 LTR ERVL 1 419 -96 2464 143 14 7 chr4 82105623 82106042 -120222305 + MSTA LTR MaLR 1 422 -6 592 112 10 0 chr4 82106038 82106136 -120222211 + MLT2B1 LTR ERVL 415 513 -2 * 190 143 107 18 chr4 82106877 82106933 -120221414 + MIR SINE MIR 81 141 -67 322 318 163 22 chr4 82107245 82107645 -120220702 + L1ME4a LINE L1 4727 5182 -964 400 316 77 24 chr4 82107661 82107870 -120220477 + L1ME4a LINE L1 5254 5473 -2335 534 284 125 0 chr4 82108069 82108245 -120220102 - MIR SINE MIR -60 202 5 361 286 88 60 chr4 82108265 82108490 -120219857 + L1ME4a LINE L1 5795 6033 -88 482 232 18 27 chr4 82108490 82108602 -120219745 - MER81 DNA DNA -1 113 3 361 286 88 60 chr4 82108602 82108694 -120219653 + L1ME4a LINE L1 6033 6121 0 462 268 123 25 chr4 82108855 82109090 -120219257 - L2 LINE L2 -52 3261 3004 1229 134 5 0 chr4 82111356 82111550 -120216797 - MER2 DNA MER2_type -150 195 1 243 323 89 16 chr4 82111550 82111674 -120216673 - MIR SINE MIR -108 154 22 267 343 145 0 chr4 82112075 82112247 -120216100 - MIR SINE MIR -36 226 30 860 260 33 21 chr4 82112687 82112929 -120215418 + MIR SINE MIR 8 252 -10 188 436 0 20 chr4 82114215 82114316 -120214031 + MIR SINE MIR 49 147 -115 21 0 0 0 chr4 82114659 82114680 -120213667 + AT_rich Low_complexity Low_complexity 1 21 0 346 271 23 23 chr4 82114734 82114867 -120213480 + L1MEc LINE L1 57 189 -6207 861 232 31 0 chr4 82114904 82115163 -120213184 + L1MEc LINE L1 2736 3002 -3213 348 359 21 14 chr4 82115186 82115331 -120213016 + L1MEc LINE L1 3449 3594 -2621 1024 234 62 2 chr4 82115348 82115662 -120212685 - L1ME LINE L1 -579 5585 5256 2216 123 0 0 chr4 82116240 82116541 -120211806 + AluSx SINE Alu 1 301 -11 3317 100 0 87 chr4 82116617 82117246 -120211101 - MER4B LTR ERV1 -36 574 1 1681 128 4 27 chr4 82117792 82118049 -120210298 - AluSx SINE Alu -61 251 1 2510 40 0 46 chr4 82118181 82118506 -120209841 - AluY SINE Alu -1 310 1 1809 167 0 7 chr4 82118990 82119278 -120209069 + AluJb SINE Alu 1 286 -26 23 33 0 0 chr4 82119278 82119308 -120209039 + AT_rich Low_complexity Low_complexity 1 30 0 367 256 62 106 chr4 82120039 82120426 -120207921 - L1M4 LINE L1 -3558 2588 2219 416 359 40 5 chr4 82121164 82121387 -120206960 - HAL1 LINE L1 -802 1705 1475 30 45 0 0 chr4 82121525 82121569 -120206778 + AT_rich Low_complexity Low_complexity 1 44 0 300 333 69 32 chr4 82121728 82121974 -120206373 + LTR16A LTR ERVL 94 348 -102 1763 97 66 69 chr4 82122027 82122316 -120206031 + AluSx SINE Alu 17 304 -8 510 249 55 12 chr4 82122434 82122599 -120205748 + HERV16 LTR ERVL 120 291 -4705 587 270 33 7 chr4 82122632 82122784 -120205563 + MER5A DNA MER1_type 34 189 0 2418 290 74 12 chr4 82122992 82124209 -120204138 + HERV16 LTR ERVL 559 1914 -3082 1545 189 60 87 chr4 82124213 82124336 -120204011 + MLT1D LTR MaLR 1 126 -379 1332 205 17 118 chr4 82124336 82124741 -120203606 - MLT1A1 LTR MaLR 0 365 2 1545 189 60 87 chr4 82124741 82125136 -120203211 + MLT1D LTR MaLR 126 505 0 1778 308 24 42 chr4 82125185 82125997 -120202350 + HERV16 LTR ERVL 2392 3090 -1906 337 338 8 0 chr4 82125989 82126122 -120202225 + HERV16 LTR ERVL 3275 3408 -2356 * 392 288 114 21 chr4 82126233 82126555 -120201792 + HERV16 LTR ERVL 3219 3858 -1602 1022 362 16 22 chr4 82126575 82127269 -120201078 + HERV16 LTR ERVL 3991 4680 -1084 506 307 61 9 chr4 82127395 82127607 -120200740 + LTR16A LTR ERVL 206 428 -22 2258 111 9 29 chr4 82127614 82127956 -120200391 - MER1B DNA MER1_type -2 335 1 3240 213 60 33 chr4 82128125 82128898 -120199449 - L1MB7 LINE L1 -1 6183 5432 2067 127 3 0 chr4 82128898 82129190 -120199157 - AluSp SINE Alu -20 293 1 3240 213 60 33 chr4 82129190 82129885 -120198462 - L1MB7 LINE L1 -752 5432 4643 2032 268 66 23 chr4 82129888 82130627 -120197720 + L1MEc LINE L1 37 807 -5589 1929 193 66 27 chr4 82130627 82131113 -120197234 + MLT1D LTR MaLR 1 505 0 3311 212 7 73 chr4 82131113 82132058 -120196289 + MLT1D-int LTR MaLR 1 883 -488 1147 224 38 42 chr4 82132198 82132511 -120195836 + MLT1D-int LTR MaLR 963 1274 -97 1115 333 67 5 chr4 82132863 82133434 -120194913 - HERVL LTR ERVL -3703 1951 1346 873 293 69 54 chr4 82133469 82134076 -120194271 - L1MB7 LINE L1 -2867 3279 2664 333 337 129 15 chr4 82134548 82134750 -120193597 - HAL1b LINE L1 -738 610 386 378 0 0 0 chr4 82134757 82134799 -120193548 + (TG)n Simple_repeat Simple_repeat 1 42 0 219 69 0 0 chr4 82134799 82134828 -120193519 + (GA)n Simple_repeat Simple_repeat 2 30 0 880 141 12 6 chr4 82134933 82135096 -120193251 + CT-rich Low_complexity Low_complexity 1 164 0 290 154 0 31 chr4 82135110 82135175 -120193172 + CT-rich Low_complexity Low_complexity 1 63 0 1926 141 0 7 chr4 82135210 82135479 -120192868 - AluSx SINE Alu -37 275 9 207 0 0 0 chr4 82135872 82135895 -120192452 + (T)n Simple_repeat Simple_repeat 1 23 0 1116 115 22 11 chr4 82135898 82136080 -120192267 + MER30B DNA MER1_type 1 184 -6 218 56 28 0 chr4 82136327 82136363 -120191984 + (TG)n Simple_repeat Simple_repeat 1 37 0 548 303 59 76 chr4 82136822 82137310 -120191037 - HAL1 LINE L1 -1218 1289 810 272 262 41 55 chr4 82138971 82139116 -120189231 - MIR SINE MIR -44 218 76 340 269 46 19 chr4 82139584 82139692 -120188655 - MER94 DNA DNA -23 111 1 265 306 89 0 chr4 82140036 82140193 -120188154 - MLT1I LTR MaLR -7 402 232 1683 175 10 20 chr4 82140403 82140695 -120187652 - AluJo SINE Alu -23 289 1 180 0 0 0 chr4 82140733 82140753 -120187594 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3047 215 19 10 chr4 82140771 82141470 -120186877 - L1ME1 LINE L1 -14 6152 5448 1227 142 28 31 chr4 82141490 82141744 -120186603 - MER33 DNA MER1_type -49 275 23 303 248 160 16 chr4 82142034 82142159 -120186188 - L1ME4a LINE L1 -5 6116 5974 1509 212 26 50 chr4 82142213 82142591 -120185756 + MLT1A2 LTR MaLR 1 369 -5 303 289 20 20 chr4 82142619 82142768 -120185579 - L1ME4a LINE L1 -224 5897 5749 318 230 133 73 chr4 82143717 82143882 -120184465 + L1ME4a LINE L1 5258 5432 -734 481 209 70 0 chr4 82143939 82144054 -120184293 - MIR SINE MIR -70 192 70 607 278 68 65 chr4 82144152 82144491 -120183856 + L1ME4a LINE L1 5591 5928 -195 214 278 9 37 chr4 82144792 82144900 -120183447 + GA-rich Low_complexity Low_complexity 3 107 0 539 29 14 0 chr4 82145008 82145077 -120183270 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 301 247 0 13 chr4 82145350 82145427 -120182920 + MLT1J2 LTR MaLR 360 435 -15 606 226 127 28 chr4 82145441 82145622 -120182725 + MIR SINE MIR 64 262 0 769 219 0 0 chr4 82146321 82146449 -120181898 - FAM SINE Alu -57 128 1 2184 99 0 0 chr4 82146653 82146936 -120181411 - AluSg SINE Alu -21 289 7 230 163 0 0 chr4 82147033 82147076 -120181271 - L2 LINE L2 0 3313 3271 363 78 0 0 chr4 82149342 82149393 -120178954 + (TG)n Simple_repeat Simple_repeat 1 51 0 180 0 0 0 chr4 82151129 82151149 -120177198 + (CGGGGG)n Simple_repeat Simple_repeat 2 21 0 198 0 0 0 chr4 82151306 82151328 -120177019 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 287 221 0 0 chr4 82151334 82151402 -120176945 - MIR SINE MIR -12 250 183 256 349 38 19 chr4 82151892 82151998 -120176349 + MIR3 SINE MIR 70 177 -31 1994 168 0 0 chr4 82152079 82152388 -120175959 - AluSx SINE Alu -3 309 1 269 238 66 57 chr4 82152961 82153083 -120175264 - L2 LINE L2 0 3313 3191 201 179 0 26 chr4 82155266 82155305 -120173042 + (CATA)n Simple_repeat Simple_repeat 3 40 0 188 33 0 33 chr4 82155448 82155478 -120172869 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 232 119 0 0 chr4 82156296 82156338 -120172009 + LTR66 LTR ERVL 397 438 -172 501 113 16 65 chr4 82156368 82156554 -120171793 + (TA)n Simple_repeat Simple_repeat 2 178 0 213 296 52 97 chr4 82158396 82158594 -120169753 - MIR SINE MIR -42 220 23 1666 134 100 34 chr4 82158890 82159233 -120169114 - AluSg SINE Alu 0 310 1 1152 240 148 33 chr4 82159331 82159865 -120168482 - L2 LINE L2 -6 3307 2707 314 277 24 0 chr4 82160410 82160493 -120167854 - MIR3 SINE MIR -21 187 103 350 281 76 38 chr4 82160720 82160930 -120167417 + MIR SINE MIR 11 228 -34 375 271 50 36 chr4 82161013 82161153 -120167194 - MIR SINE MIR -73 189 48 312 143 0 0 chr4 82161472 82161528 -120166819 + (TA)n Simple_repeat Simple_repeat 1 56 0 444 304 87 6 chr4 82162056 82162217 -120166130 + MIR SINE MIR 89 262 0 350 335 56 11 chr4 82162441 82162620 -120165727 + MIR SINE MIR 39 225 -37 396 360 23 17 chr4 82162651 82162826 -120165521 + MIR3 SINE MIR 2 177 -31 1206 182 0 28 chr4 82162830 82163044 -120165303 + MER3 DNA MER1_type 1 208 -1 25 0 0 0 chr4 82163381 82163406 -120164941 + AT_rich Low_complexity Low_complexity 1 25 0 247 235 20 0 chr4 82164108 82164159 -120164188 + L3 LINE CR1 1426 1477 -100 203 238 16 16 chr4 82164815 82164878 -120163469 + (TA)n Simple_repeat Simple_repeat 2 64 0 22 0 0 0 chr4 82165122 82165144 -120163203 + AT_rich Low_complexity Low_complexity 1 22 0 352 144 111 11 chr4 82165891 82165981 -120162366 + MLT1L LTR MaLR 151 249 -366 547 254 42 32 chr4 82166533 82166722 -120161625 + MLT1L LTR MaLR 411 601 -14 502 227 207 7 chr4 82166824 82166974 -120161373 + MIR SINE MIR 39 218 -44 1467 201 50 0 chr4 82168323 82168441 -120159906 + AluJo SINE Alu 1 112 -200 231 61 0 0 chr4 82168441 82168474 -120159873 + (CA)n Simple_repeat Simple_repeat 2 34 0 1467 201 50 0 chr4 82168474 82168634 -120159713 + AluJo SINE Alu 112 293 -19 21 0 0 0 chr4 82168676 82168697 -120159650 + AT_rich Low_complexity Low_complexity 1 21 0 1622 191 0 3 chr4 82168697 82168979 -120159368 - L1PB4 LINE L1 -3 6153 5873 1774 117 79 17 chr4 82169330 82169621 -120158726 + AluSx SINE Alu 1 309 -3 230 208 75 0 chr4 82170213 82170266 -120158081 + L1ME LINE L1 5736 5792 -329 2615 50 0 0 chr4 82170333 82170636 -120157711 + AluY SINE Alu 1 303 -8 633 280 55 38 chr4 82170956 82171192 -120157155 + MIR SINE MIR 23 262 0 294 228 152 11 chr4 82171686 82171778 -120156569 + MER117 DNA MER1_type 8 112 -85 853 280 25 34 chr4 82171857 82172223 -120156124 - MLT1I LTR MaLR -32 377 47 1992 119 14 0 chr4 82172331 82172608 -120155739 + AluSx SINE Alu 1 281 -31 26 88 0 0 chr4 82173721 82173789 -120154558 + AT_rich Low_complexity Low_complexity 1 68 0 1553 161 17 50 chr4 82173796 82174095 -120154252 - AluJo SINE Alu -23 289 1 225 172 112 95 chr4 82174248 82174364 -120153983 - L1ME4a LINE L1 -44 6077 5960 1685 186 16 16 chr4 82174574 82174886 -120153461 - AluJo SINE Alu 0 312 1 6429 42 15 0 chr4 82174894 82175629 -120152718 - L1PA5 LINE L1 -1 6153 5408 24 32 0 0 chr4 82175683 82175714 -120152633 + AT_rich Low_complexity Low_complexity 1 31 0 763 186 76 12 chr4 82175969 82176141 -120152206 - L1ME4a LINE L1 -554 5608 5426 281 327 173 24 chr4 82176164 82176372 -120151975 + L3 LINE CR1 1220 1458 -119 238 211 144 22 chr4 82176380 82176470 -120151877 - LTR67 LTR ERVL 0 557 457 391 305 63 47 chr4 82176629 82176819 -120151528 - MLT1K LTR MaLR -394 194 2 212 250 0 16 chr4 82177784 82177848 -120150499 + GA-rich Low_complexity Low_complexity 2 64 0 1578 207 95 17 chr4 82178073 82178483 -120149864 - L1ME3A LINE L1 -57 6113 5672 280 179 83 48 chr4 82178485 82178569 -120149778 - L1ME LINE L1 -441 5729 5643 291 243 122 19 chr4 82178758 82178865 -120149482 - L1ME LINE L1 -602 5564 5447 1726 102 3 78 chr4 82179548 82179831 -120148516 + AluSp SINE Alu 38 299 -14 24 32 0 0 chr4 82179929 82179960 -120148387 + AT_rich Low_complexity Low_complexity 1 31 0 2265 103 0 0 chr4 82180074 82180365 -120147982 + AluSx SINE Alu 1 291 -21 261 318 68 27 chr4 82180774 82180922 -120147425 + MIR SINE MIR 59 212 -50 3642 280 58 43 chr4 82181017 82182383 -120145964 + L1MEc LINE L1 36 1439 -4957 2327 88 0 7 chr4 82182383 82182689 -120145658 + AluY SINE Alu 1 304 -7 3642 280 58 43 chr4 82182689 82183213 -120145134 + L1MEc LINE L1 1439 1954 -4442 3225 224 42 15 chr4 82183384 82184174 -120144173 - L1ME1 LINE L1 -51 6115 5305 1938 91 58 11 chr4 82184177 82184451 -120143896 + L1PA10 LINE L1 5881 6167 -1 15115 87 5 1 chr4 82184465 82186784 -120141563 + L1P3 LINE L1 3324 5649 -505 342 148 34 91 chr4 82187016 82187104 -120141243 + MER103 DNA DNA 45 127 -39 653 337 47 19 chr4 82187247 82187612 -120140735 + L2 LINE L2 2140 2514 -800 300 375 0 0 chr4 82188151 82188319 -120140028 + (CCA)n Simple_repeat Simple_repeat 1 168 0 1239 127 5 171 chr4 82189084 82189463 -120138884 - MER33 DNA MER1_type -8 316 1 523 283 125 87 chr4 82189465 82189981 -120138366 + L2 LINE L2 2628 3176 -96 491 312 67 49 chr4 82189993 82190320 -120138027 - MLT1J LTR MaLR -73 438 106 285 231 96 39 chr4 82192279 82192383 -120135964 + L2 LINE L2 3163 3272 0 638 217 145 61 chr4 82193146 82193180 -120135167 + L1ME4a LINE L1 5596 5626 -495 2238 125 0 0 chr4 82193180 82193477 -120134870 - AluSx SINE Alu -15 297 1 638 217 145 61 chr4 82193477 82193787 -120134560 + L1ME4a LINE L1 5626 5969 -152 510 167 21 0 chr4 82194427 82194523 -120133824 + L2 LINE L2 2676 2773 -541 273 308 11 11 chr4 82195173 82195264 -120133083 - MIR3 SINE MIR -108 100 10 720 216 85 35 chr4 82195886 82196085 -120132262 - MER3 DNA MER1_type 0 209 1 188 259 0 19 chr4 82196180 82196234 -120132113 - L2 LINE L2 0 3313 3261 243 61 0 0 chr4 82196395 82196428 -120131919 + (TG)n Simple_repeat Simple_repeat 2 34 0 2375 233 70 50 chr4 82196432 82197174 -120131173 - MER21B LTR ERV1 -88 775 19 256 275 72 0 chr4 82197201 82197270 -120131077 - MER21B LTR ERV1 -777 86 13 366 281 37 119 chr4 82198174 82198411 -120129936 + MLT1K LTR MaLR 316 526 -62 2124 111 20 0 chr4 82198411 82198585 -120129762 - AluSq SINE Alu -9 304 120 186 43 0 0 chr4 82198585 82198608 -120129739 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2124 111 20 0 chr4 82198608 82198731 -120129616 - AluSq SINE Alu -193 120 1 366 281 37 119 chr4 82198731 82198788 -120129559 + MLT1K LTR MaLR 526 586 -2 595 249 58 39 chr4 82199380 82199585 -120128762 - MLT1K LTR MaLR 0 588 380 2573 117 42 26 chr4 82199846 82200273 -120128074 - Tigger2a DNA MER2_type 0 434 1 1926 139 0 11 chr4 82200587 82200868 -120127479 + AluSx SINE Alu 9 286 -26 192 77 0 0 chr4 82200872 82200898 -120127449 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1080 209 52 5 chr4 82200910 82201120 -120127227 + AluJo SINE Alu 1 220 -92 259 333 57 9 chr4 82201936 82202041 -120126306 + MIR SINE MIR 19 128 -80 2403 52 0 3 chr4 82202817 82203108 -120125239 + AluY SINE Alu 13 302 -9 695 190 0 0 chr4 82203319 82203435 -120124912 - FLAM_A SINE Alu -17 116 1 27 29 0 0 chr4 82204021 82204055 -120124292 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr4 82204251 82204280 -120124067 + AT_rich Low_complexity Low_complexity 1 29 0 3965 176 14 1 chr4 82204296 82205036 -120123311 - L1MB7 LINE L1 -8 6176 5428 203 319 151 17 chr4 82205160 82205279 -120123068 - MIR SINE MIR -108 154 20 5426 131 12 8 chr4 82205594 82206474 -120121873 + L1MC1 LINE L1 5445 6328 -5 9939 76 20 1 chr4 82206555 82207877 -120120470 - SVA Other Other 0 1386 40 480 18 0 0 chr4 82207881 82207938 -120120409 + (GGGAGA)n Simple_repeat Simple_repeat 2 58 0 853 254 180 43 chr4 82208947 82209369 -120118978 + HAL1 LINE L1 177 656 -1851 2067 154 0 0 chr4 82209550 82209862 -120118485 - AluSx SINE Alu 0 312 1 232 306 16 16 chr4 82209893 82210017 -120118330 + T-rich Low_complexity Low_complexity 2 125 0 25 31 0 0 chr4 82210560 82210592 -120117755 + AT_rich Low_complexity Low_complexity 1 32 0 754 182 8 15 chr4 82212098 82212230 -120116117 + FLAM_A SINE Alu 1 131 -2 568 221 86 18 chr4 82212660 82212823 -120115524 + MER58C DNA MER1_type 36 209 -6 259 273 73 27 chr4 82212903 82213013 -120115334 + L1ME LINE L1 97 211 -5908 18075 101 29 5 chr4 82213197 82215838 -120112509 + Charlie3 DNA MER1_type 1 2705 -5 1439 195 32 3 chr4 82215919 82216201 -120112146 - AluJo SINE Alu -22 290 1 657 201 47 10 chr4 82216451 82216685 -120111662 + L1ME LINE L1 940 1185 -4934 * 1102 214 41 96 chr4 82216675 82217115 -120111232 + L1MD2 LINE L1 5494 5909 -450 * 3572 195 31 2 chr4 82217113 82218014 -120110333 + L1MB3 LINE L1 5099 6025 -158 297 269 180 24 chr4 82218014 82218181 -120110166 + L1ME1 LINE L1 5898 6090 -76 2181 103 3 7 chr4 82218350 82218652 -120109695 - AluSx SINE Alu -11 301 1 1457 99 0 5 chr4 82218711 82218903 -120109444 + AluSg/x SINE Alu 107 297 -15 322 298 144 0 chr4 82218979 82219305 -120109042 - L1ME4a LINE L1 -4 6117 5745 216 0 0 0 chr4 82219358 82219382 -120108965 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 907 227 87 5 chr4 82219473 82219680 -120108667 + MER58A DNA MER1_type 1 224 0 1798 193 0 0 chr4 82219806 82220101 -120108246 + AluJb SINE Alu 6 300 -12 924 227 87 5 chr4 82221055 82221262 -120107085 + MER58A DNA MER1_type 1 224 0 262 373 63 7 chr4 82221274 82221416 -120106931 + L2 LINE L2 2686 2835 -479 3912 60 4 6 chr4 82221643 82222146 -120106201 + L1PA7 LINE L1 5649 6150 -4 301 214 8 103 chr4 82222202 82222328 -120106019 + L1MC4 LINE L1 7928 8041 -1 21 0 0 0 chr4 82222345 82222366 -120105981 + AT_rich Low_complexity Low_complexity 1 21 0 1546 226 119 54 chr4 82222367 82222476 -120105871 - L1ME4a LINE L1 -843 5303 5203 1938 103 48 4 chr4 82222476 82222771 -120105576 - AluSq SINE Alu 0 309 3 1546 226 119 54 chr4 82222771 82223438 -120104909 - L1ME4a LINE L1 -943 5203 4475 1747 249 41 48 chr4 82223447 82224299 -120104048 - L1ME4a LINE L1 -2151 3995 3150 1293 203 35 38 chr4 82224303 82224391 -120103956 - L1MB8 LINE L1 0 6178 6091 645 258 31 126 chr4 82224391 82224760 -120103587 - L1MD2 LINE L1 -258 6101 5779 2354 54 40 0 chr4 82224760 82225057 -120103290 - AluY SINE Alu -2 309 1 645 258 31 126 chr4 82225057 82225132 -120103215 - L1MD2 LINE L1 -580 5779 5699 2510 187 60 13 chr4 82225132 82225751 -120102596 - L1MB8 LINE L1 -955 5191 4544 * 2601 196 33 35 chr4 82225744 82226495 -120101852 + L1 LINE L1 2992 3741 -2405 285 145 66 0 chr4 82226954 82227030 -120101317 + L1 LINE L1 3718 3798 -2348 * 3000 168 46 13 chr4 82227021 82227695 -120100652 + L1 LINE L1 3735 4430 -1716 308 85 0 0 chr4 82227698 82227745 -120100602 + L1PB1 LINE L1 6105 6151 0 706 135 24 0 chr4 82228076 82228202 -120100145 + L1 LINE L1 4416 4544 -1602 * 3736 220 46 28 chr4 82228201 82229433 -120098914 - L1MD2 LINE L1 -942 5204 3951 1907 211 16 12 chr4 82229455 82229958 -120098389 - L1MD2 LINE L1 -3053 3093 2589 378 0 0 0 chr4 82229975 82230017 -120098330 + (TG)n Simple_repeat Simple_repeat 1 42 0 202 123 14 68 chr4 82231002 82231075 -120097272 + T-rich Low_complexity Low_complexity 3 71 0 35 24 0 0 chr4 82231101 82231143 -120097204 + AT_rich Low_complexity Low_complexity 1 42 0 10088 31 0 163 chr4 82231143 82232781 -120095566 - SVA Other Other -11 1375 5 210 245 0 0 chr4 82232783 82232836 -120095511 + GA-rich Low_complexity Low_complexity 4 56 0 185 94 31 0 chr4 82233183 82233215 -120095132 + CT-rich Low_complexity Low_complexity 3 35 0 286 218 30 109 chr4 82233287 82233388 -120094959 + L2 LINE L2 3180 3272 0 583 224 32 16 chr4 82233542 82233667 -120094680 - L2 LINE L2 0 3313 3187 304 311 8 25 chr4 82233681 82233800 -120094547 - MIR SINE MIR -74 188 72 248 258 0 15 chr4 82234415 82234481 -120093866 + Charlie8 DNA MER1_type 1350 1414 -1003 2482 51 3 0 chr4 82234530 82234841 -120093506 - L1PB1 LINE L1 0 6867 6556 13678 178 19 18 chr4 82234841 82236582 -120091765 - L1PB1 LINE L1 -687 6180 4443 1989 133 3 32 chr4 82236582 82236890 -120091457 + AluSq SINE Alu 1 299 -14 13678 178 19 18 chr4 82236890 82239878 -120088469 - L1PB1 LINE L1 -2424 4443 1392 336 189 14 0 chr4 82239875 82239949 -120088398 - L1PB1 LINE L1 -6666 197 123 * 266 344 161 32 chr4 82239972 82240251 -120088096 + L2 LINE L2 2942 3256 -16 546 253 62 28 chr4 82240543 82240721 -120087626 + MIR SINE MIR 65 248 -14 411 73 0 0 chr4 82240737 82240792 -120087555 + (TTA)n Simple_repeat Simple_repeat 1 55 0 291 339 12 55 chr4 82240910 82241075 -120087272 - L3 LINE CR1 -1 1576 1419 6896 56 150 45 chr4 82241178 82242323 -120086024 - MER11A LTR ERVK 0 1266 1 2453 93 0 0 chr4 82244368 82244679 -120083668 - AluSq SINE Alu -2 311 1 22 0 0 0 chr4 82245644 82245666 -120082681 + AT_rich Low_complexity Low_complexity 1 22 0 2256 101 3 0 chr4 82246481 82246778 -120081569 - AluSx SINE Alu -14 298 1 4899 152 37 1 chr4 82247199 82248033 -120080314 + MER6 DNA MER2_type 1 864 -1 208 97 81 0 chr4 82248717 82248779 -120079568 + (TA)n Simple_repeat Simple_repeat 1 67 0 313 304 16 16 chr4 82249539 82249664 -120078683 + L1MC5 LINE L1 7313 7437 -524 1310 211 43 48 chr4 82250030 82250166 -120078181 + MSTD LTR MaLR 1 136 -260 896 156 32 38 chr4 82250166 82250352 -120077995 + L1PB4 LINE L1 5972 6156 0 1310 211 43 48 chr4 82250352 82250609 -120077738 + MSTD LTR MaLR 136 392 -4 412 205 234 53 chr4 82250632 82250803 -120077544 - MIR SINE MIR -55 207 6 272 259 140 34 chr4 82251266 82251502 -120076845 - L1ME LINE L1 -252 5869 5609 230 143 0 0 chr4 82252251 82252286 -120076061 - tRNA-Phe-TTC tRNA tRNA -41 35 1 630 171 196 6 chr4 82254551 82254676 -120073671 - MER5A DNA MER1_type -1 188 26 447 19 0 0 chr4 82254676 82254728 -120073619 + (ATG)n Simple_repeat Simple_repeat 1 52 0 630 171 196 6 chr4 82254728 82254760 -120073587 - MER5A DNA MER1_type -163 26 1 219 259 123 12 chr4 82254795 82254876 -120073471 + MER5B DNA MER1_type 89 178 0 21 82 0 0 chr4 82255612 82255661 -120072686 + AT_rich Low_complexity Low_complexity 1 49 0 227 250 95 26 chr4 82255738 82255854 -120072493 + L1M2 LINE L1 5337 5460 -831 * 322 281 54 36 chr4 82255853 82256131 -120072216 + L1ME4a LINE L1 5599 5881 -240 438 281 40 25 chr4 82256437 82256636 -120071711 - MLT1K LTR MaLR 0 588 387 796 209 93 0 chr4 82258228 82258410 -120069937 + MER3 DNA MER1_type 9 207 -2 3124 185 97 18 chr4 82258972 82259887 -120068460 - Charlie2 DNA MER1_type -19 2843 1856 226 283 127 82 chr4 82259879 82260194 -120068153 - Charlie2 DNA MER1_type -2533 329 1 * 641 266 90 35 chr4 82260194 82260591 -120067756 + MLT1L LTR MaLR 148 566 -49 700 208 10 96 chr4 82260778 82261071 -120067276 - L1MC5 LINE L1 -731 7230 6963 1010 144 136 39 chr4 82261097 82261354 -120066993 + MER44D DNA MER2_type 1 552 -57 231 239 0 0 chr4 82261435 82261481 -120066866 + MER44D DNA MER2_type 557 602 -3 1051 216 11 65 chr4 82261482 82261897 -120066450 - L1MC5 LINE L1 -892 6916 6566 22 35 0 0 chr4 82261897 82261926 -120066421 + AT_rich Low_complexity Low_complexity 1 29 0 377 191 284 6 chr4 82262183 82262345 -120066002 - L1ME LINE L1 -2320 5488 5282 24653 32 0 0 chr4 82262654 82266427 -120061920 + L1PA4 LINE L1 2379 6151 -4 1344 139 5 14 chr4 82266740 82266963 -120061384 - L1PA14 LINE L1 0 6161 5941 490 308 98 21 chr4 82268155 82268480 -120059867 + L2 LINE L2 2468 2817 -497 282 29 0 0 chr4 82268605 82268640 -120059707 + (TG)n Simple_repeat Simple_repeat 1 35 0 840 223 0 0 chr4 82268659 82268816 -120059531 - FAM SINE Alu -18 157 1 24 0 0 0 chr4 82268822 82268846 -120059501 + AT_rich Low_complexity Low_complexity 1 24 0 755 200 15 0 chr4 82268861 82268991 -120059356 + FLAM_A SINE Alu 2 133 0 204 330 80 0 chr4 82269123 82269223 -120059124 + MIR SINE MIR 3 110 -152 2201 125 19 32 chr4 82269285 82269654 -120058693 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr4 82270622 82270645 -120057702 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr4 82271101 82271122 -120057225 + (T)n Simple_repeat Simple_repeat 1 21 0 686 250 42 6 chr4 82271770 82271938 -120056409 + MIR SINE MIR 30 203 -59 1745 123 118 49 chr4 82272445 82272498 -120055849 + MLT1B LTR MaLR 1 49 -341 2027 122 44 39 chr4 82272498 82272860 -120055487 - THE1B LTR MaLR 0 364 1 11826 82 15 1 chr4 82272860 82274418 -120053929 - THE1B-int LTR MaLR 0 1580 1 2080 132 25 30 chr4 82274418 82274781 -120053566 - THE1B LTR MaLR 0 364 4 1745 123 118 49 chr4 82274781 82275090 -120053257 + MLT1B LTR MaLR 48 390 0 2164 116 7 7 chr4 82275266 82275569 -120052778 - AluSx SINE Alu -8 304 2 183 299 149 0 chr4 82275710 82275777 -120052570 + L2 LINE L2 3187 3263 -50 434 277 218 11 chr4 82276528 82276716 -120051631 - MIR SINE MIR -6 256 30 345 274 72 99 chr4 82277507 82277550 -120050797 - MIR SINE MIR 0 262 219 666 246 47 6 chr4 82277550 82277721 -120050626 + MER45A DNA AcHobo 1 178 0 345 274 72 99 chr4 82277721 82277940 -120050407 - MIR SINE MIR -43 219 7 1991 186 14 3 chr4 82280520 82280881 -120047466 + MLT1A1 LTR MaLR 1 365 0 253 273 118 27 chr4 82281627 82281737 -120046610 - L2 LINE L2 0 3272 3153 12690 52 74 4 chr4 82282730 82284492 -120043855 + L1P LINE L1 2 1886 -4260 542 139 8 25 chr4 82284618 82284740 -120043607 + G-rich Low_complexity Low_complexity 2 121 0 205 345 42 24 chr4 82284966 82285134 -120043213 + L2 LINE L2 2520 2690 -624 1406 123 53 8 chr4 82285150 82285394 -120042953 + MLT2B2 LTR ERVL 1 255 -260 314 120 83 0 chr4 82285377 82285425 -120042922 + MLT2C2 LTR ERVL 427 429 -35 * 219 88 0 0 chr4 82285425 82285459 -120042888 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 314 120 83 0 chr4 82285459 82285499 -120042848 + MLT2C2 LTR ERVL 429 464 0 235 332 243 6 chr4 82285608 82285921 -120042426 + L2 LINE L2 2876 3262 -51 266 265 0 44 chr4 82286409 82286477 -120041870 - L2 LINE L2 0 3272 3208 2802 133 23 10 chr4 82286633 82287075 -120041272 + L1MB2 LINE L1 5676 6127 -44 2221 100 0 0 chr4 82287075 82287385 -120040962 + AluSc SINE Alu 1 310 0 2802 133 23 10 chr4 82287385 82287428 -120040919 + L1MB2 LINE L1 6127 6168 -3 305 252 39 52 chr4 82288032 82288187 -120040160 + L1MC5 LINE L1 7761 7913 -48 15588 19 0 0 chr4 82288582 82291262 -120037085 + L1HS LINE L1 3476 6155 0 24 0 0 0 chr4 82291892 82291916 -120036431 + AT_rich Low_complexity Low_complexity 1 24 0 214 182 0 0 chr4 82292285 82292329 -120036018 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 3812 31 0 0 chr4 82292329 82292777 -120035570 - L1PA4 LINE L1 -6 6149 5702 248 319 11 11 chr4 82292959 82293050 -120035297 + MLT1J LTR MaLR 109 199 -312 892 317 37 12 chr4 82293309 82293634 -120034713 + LTR16A LTR ERVL 112 444 -6 306 308 0 0 chr4 82294131 82294209 -120034138 - L2 LINE L2 -214 3058 2981 1964 182 49 28 chr4 82294250 82294723 -120033624 + L1MB4 LINE L1 5692 6174 -6 390 240 27 49 chr4 82295120 82295303 -120033044 - L1ME3 LINE L1 -43 6119 5941 186 283 43 0 chr4 82295942 82295988 -120032359 - L2 LINE L2 -31 3282 3235 616 207 103 46 chr4 82296764 82297107 -120031240 - LTR33 LTR ERVL -18 503 67 1882 157 0 26 chr4 82297249 82297561 -120030786 - AluJb SINE Alu -8 304 1 33 0 0 0 chr4 82297731 82297764 -120030583 + AT_rich Low_complexity Low_complexity 1 33 0 430 332 204 18 chr4 82297978 82298478 -120029869 - L2 LINE L2 -640 2674 2082 1314 174 38 16 chr4 82299305 82299603 -120028744 + MLT2C1 LTR ERVL 1 291 -106 615 88 0 0 chr4 82299603 82299683 -120028664 - MADE1 DNA Mariner 0 80 1 503 30 0 15 chr4 82299685 82299751 -120028596 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 1314 174 38 16 chr4 82299751 82299794 -120028553 + MLT2C1 LTR ERVL 291 395 -2 2234 125 0 0 chr4 82300116 82300420 -120027927 + AluY SINE Alu 1 304 -7 1020 187 29 0 chr4 82303109 82303304 -120025043 + MLT1E3 LTR MaLR 46 305 -349 903 235 128 13 chr4 82303494 82303728 -120024619 + MER58 DNA MER1_type 5 265 -76 409 202 19 48 chr4 82303734 82303838 -120024509 + MLT2C1 LTR ERVL 294 394 -3 289 284 25 0 chr4 82303955 82304036 -120024311 - MER5A DNA MER1_type -80 109 27 387 0 0 0 chr4 82304163 82304206 -120024141 + (CA)n Simple_repeat Simple_repeat 2 44 0 231 311 270 14 chr4 82304716 82305031 -120023316 + L2 LINE L2 1861 2094 -1220 2339 106 0 6 chr4 82305031 82305343 -120023004 - AluSx SINE Alu -2 310 1 231 311 270 14 chr4 82305343 82305516 -120022831 + L2 LINE L2 2094 2474 -840 210 316 79 22 chr4 82305492 82305631 -120022716 + L2 LINE L2 2957 3103 -169 * 307 302 111 8 chr4 82307717 82307843 -120020504 + L2 LINE L2 3134 3272 0 235 293 267 17 chr4 82307843 82307959 -120020388 + L2 LINE L2 3128 3272 0 470 182 121 0 chr4 82309102 82309201 -120019146 + MLT1C LTR MaLR 1 111 -356 202 302 135 21 chr4 82309578 82309674 -120018673 - L3 LINE CR1 -2 1575 1469 969 220 76 70 chr4 82309694 82310035 -120018312 + MLT1C LTR MaLR 125 467 0 242 300 33 11 chr4 82310035 82310125 -120018222 - MIR SINE MIR -89 173 82 1041 56 0 0 chr4 82310725 82310851 -120017496 + AluY SINE Alu 174 299 -12 494 356 115 0 chr4 82310939 82311200 -120017147 + L3 LINE CR1 417 707 -870 783 295 129 6 chr4 82311334 82311690 -120016657 + L3 LINE CR1 1176 1575 -2 3195 144 43 0 chr4 82311956 82312517 -120015830 - L1PBa LINE L1 -4887 1976 1392 927 209 9 9 chr4 82312494 82312705 -120015642 - L1PBa LINE L1 -6647 216 6 * 212 283 81 40 chr4 82312909 82313008 -120015339 + MIR SINE MIR 84 186 -76 1940 210 38 32 chr4 82314063 82314558 -120013789 - MLT1D LTR MaLR -7 498 1 1832 169 26 0 chr4 82315094 82315396 -120012951 + AluJo SINE Alu 1 310 -2 3274 204 25 47 chr4 82316275 82316720 -120011627 + MER82 DNA MER2_type 2 432 -221 2200 99 0 3 chr4 82316720 82317038 -120011309 + AluSq SINE Alu 1 317 0 3274 204 25 47 chr4 82317038 82317256 -120011091 + MER82 DNA MER2_type 432 653 0 4326 181 40 26 chr4 82317934 82318826 -120009521 - L1P LINE L1 -5231 915 11 281 229 0 57 chr4 82319249 82319319 -120009028 - L2 LINE L2 0 3313 3248 562 293 170 42 chr4 82319496 82319927 -120008420 - L2 LINE L2 -403 2911 2406 252 0 0 0 chr4 82319927 82319955 -120008392 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 562 293 170 42 chr4 82319955 82320022 -120008325 - L2 LINE L2 -908 2406 2349 22 0 0 0 chr4 82320022 82320044 -120008303 + AT_rich Low_complexity Low_complexity 1 22 0 8108 25 0 1 chr4 82320044 82321597 -120006750 - L1PA4 LINE L1 -3 6152 4604 209 307 51 81 chr4 82321997 82322293 -120006054 + L2 LINE L2 2683 2969 -345 202 329 14 43 chr4 82322533 82322603 -120005744 + L2 LINE L2 3199 3266 -6 188 286 253 0 chr4 82322905 82322996 -120005351 - L2 LINE L2 -3 3310 3197 192 200 0 0 chr4 82323480 82323520 -120004827 + (TA)n Simple_repeat Simple_repeat 2 41 0 2425 104 24 0 chr4 82324422 82324760 -120003587 + L1MA2 LINE L1 5952 6297 -7 1471 74 10 5 chr4 82325047 82325250 -120003097 - AluY SINE Alu -6 305 102 502 350 17 6 chr4 82325821 82326001 -120002346 - MIR SINE MIR -31 231 50 180 0 0 0 chr4 82326040 82326060 -120002287 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 202 289 0 0 chr4 82326327 82326379 -120001968 + CT-rich Low_complexity Low_complexity 3 54 0 348 266 0 0 chr4 82326814 82326878 -120001469 + MER91 DNA MER1_type 1 64 -76 3568 197 19 15 chr4 82326920 82327569 -120000778 + MER82 DNA MER2_type 3 653 0 492 307 28 0 chr4 82327638 82327787 -120000560 - MIR3 SINE MIR -5 203 51 244 301 36 0 chr4 82327962 82328045 -120000302 - L2 LINE L2 0 3272 3187 217 259 0 0 chr4 82328443 82328497 -119999850 + (TA)n Simple_repeat Simple_repeat 2 55 0 21 0 0 0 chr4 82328561 82328582 -119999765 + AT_rich Low_complexity Low_complexity 1 21 0 631 276 92 18 chr4 82328831 82329059 -119999288 + MIR SINE MIR 15 259 -3 480 197 71 31 chr4 82329685 82329812 -119998535 + MIR SINE MIR 65 196 -66 614 224 160 11 chr4 82331114 82331395 -119996952 - L1MC5 LINE L1 -36 7925 7603 476 270 32 16 chr4 82331509 82331635 -119996712 + MIR3 SINE MIR 46 173 -35 564 114 0 0 chr4 82331635 82331714 -119996633 + L1P5 LINE L1 5712 5790 -361 263 284 23 0 chr4 82331706 82331794 -119996553 + L1MC4 LINE L1 6614 6703 -1339 * 226 277 48 0 chr4 82331740 82331823 -119996524 - L1MC4 LINE L1 -1339 6703 6617 * 221 179 0 36 chr4 82331824 82331880 -119996467 + (TATATG)n Simple_repeat Simple_repeat 2 55 0 405 197 0 0 chr4 82331884 82331955 -119996392 + L1PB1 LINE L1 5782 5852 -299 1913 66 0 0 chr4 82332143 82332371 -119995976 - L1PA7 LINE L1 -4 6150 5923 335 263 50 25 chr4 82332498 82332658 -119995689 + L1MEd LINE L1 517 680 -5954 3453 112 2 4 chr4 82332750 82333234 -119995113 + L1PB1 LINE L1 5667 6149 -2 291 268 29 34 chr4 82333390 82333685 -119994662 + L1MEd LINE L1 1034 1169 -4957 1190 271 62 12 chr4 82333772 82334485 -119993862 + L1MEd LINE L1 2329 3039 -3605 13806 82 3 0 chr4 82334599 82337133 -119991214 + L1PA7 LINE L1 3611 6152 -2 304 333 53 13 chr4 82339294 82339459 -119988888 + MER5A DNA MER1_type 18 177 -1 3790 113 17 15 chr4 82339460 82340044 -119988303 + L1MA5A LINE L1 5692 6276 -21 285 264 0 0 chr4 82340051 82340138 -119988209 + L1M4 LINE L1 5188 5274 -872 43220 52 4 1 chr4 82340146 82345723 -119982624 + L1P2 LINE L1 1 5591 -564 1960 154 0 0 chr4 82345823 82346116 -119982231 - AluSx SINE Alu -19 293 1 189 310 17 0 chr4 82346138 82346196 -119982151 + MER5A DNA MER1_type 131 189 0 923 153 60 22 chr4 82346346 82346529 -119981818 - MER20 DNA MER1_type 0 219 30 380 104 15 0 chr4 82347587 82347654 -119980693 + (TA)n Simple_repeat Simple_repeat 2 69 0 223 213 13 67 chr4 82348636 82348711 -119979636 - MIR SINE MIR -8 254 184 2584 142 5 29 chr4 82349451 82349896 -119978451 - Tigger2a DNA MER2_type 0 434 1 273 293 48 34 chr4 82350028 82350175 -119978172 - LTR16C LTR ERVL -2 489 341 2485 65 0 0 chr4 82350571 82350865 -119977482 - AluY SINE Alu -17 294 1 642 230 115 40 chr4 82351127 82351327 -119977020 - MIR SINE MIR -25 237 23 2339 93 0 6 chr4 82352218 82352531 -119975816 + AluY SINE Alu 1 311 0 29081 59 3 1 chr4 82352602 82356490 -119971857 + L1P LINE L1 1 3899 -2247 4300 33 0 0 chr4 82356490 82356984 -119971363 + L1PA4 LINE L1 5646 6155 0 1248 181 29 122 chr4 82357319 82357729 -119970618 - MLT1A2 LTR MaLR 0 374 3 214 311 0 0 chr4 82357804 82357865 -119970482 - L2 LINE L2 -7 3265 3205 354 23 0 0 chr4 82357868 82357911 -119970436 + (GGGAA)n Simple_repeat Simple_repeat 1 43 0 218 173 0 19 chr4 82357929 82357981 -119970366 + GA-rich Low_complexity Low_complexity 1 51 0 602 313 113 16 chr4 82357996 82358360 -119969987 - L2 LINE L2 -91 3222 2824 509 72 0 0 chr4 82358475 82358544 -119969803 + Alu SINE Alu 234 302 -10 392 250 191 8 chr4 82358565 82358953 -119969394 + L1M4 LINE L1 2790 3248 -2898 234 0 0 0 chr4 82359072 82359098 -119969249 + (TG)n Simple_repeat Simple_repeat 2 27 0 970 260 37 39 chr4 82359360 82359768 -119968579 - L1ME4a LINE L1 -237 5884 5478 211 250 26 0 chr4 82360024 82360100 -119968247 + T-rich Low_complexity Low_complexity 1 78 0 2116 123 49 22 chr4 82360342 82360707 -119967640 + THE1C LTR MaLR 1 375 0 609 234 53 31 chr4 82360762 82360989 -119967358 - HAL1 LINE L1 -5 2502 2271 519 187 21 96 chr4 82361139 82361326 -119967021 - L1MC5 LINE L1 -65 7896 7724 856 261 67 63 chr4 82361331 82361853 -119966494 - HAL1 LINE L1 -309 2198 1675 479 297 91 6 chr4 82361992 82362167 -119966180 + MIR SINE MIR 25 214 -48 401 350 25 12 chr4 82362822 82362985 -119965362 - MIR3 SINE MIR 0 208 44 336 339 103 0 chr4 82364150 82364324 -119964023 - L1MC4a LINE L1 -1849 5959 5768 426 255 9 19 chr4 82365939 82366045 -119962302 - L2 LINE L2 -5 3308 3204 207 0 0 0 chr4 82367228 82367251 -119961096 + (T)n Simple_repeat Simple_repeat 1 23 0 3767 173 101 12 chr4 82371692 82373133 -119955214 - L1PA16 LINE L1 -258 5908 4325 2296 125 0 0 chr4 82374219 82374523 -119953824 + AluSx SINE Alu 1 304 -8 512 309 70 39 chr4 82374888 82375218 -119953129 + MER102b DNA MER1_type 1 340 -1 1939 149 3 7 chr4 82375476 82375772 -119952575 + AluSx SINE Alu 1 295 -17 564 261 85 15 chr4 82375981 82376180 -119952167 + MIR SINE MIR 50 262 0 544 76 0 0 chr4 82376314 82376393 -119951954 + AluSp/q SINE Alu 235 313 0 22 70 0 0 chr4 82379069 82379112 -119949235 + AT_rich Low_complexity Low_complexity 1 43 0 274 350 125 8 chr4 82380030 82380150 -119948197 + MIR3 SINE MIR 29 162 -46 908 257 120 55 chr4 82380156 82380666 -119947681 - MLT1H LTR MaLR -6 543 1 715 285 58 30 chr4 82381320 82381722 -119946625 + MLT1J1 LTR MaLR 15 444 -2 271 357 86 21 chr4 82381832 82381972 -119946375 - L2 LINE L2 -16 3256 3108 306 202 67 39 chr4 82382006 82382110 -119946237 - MLT1J LTR MaLR -30 481 375 933 264 53 0 chr4 82382162 82382408 -119945939 - MIR SINE MIR -1 261 3 210 91 0 0 chr4 82383000 82383033 -119945314 + (T)n Simple_repeat Simple_repeat 1 33 0 748 260 44 0 chr4 82384011 82384215 -119944132 + MIR SINE MIR 50 262 0 704 274 58 25 chr4 82384427 82384668 -119943679 + MIR SINE MIR 1 249 -13 460 239 109 43 chr4 82384784 82384968 -119943379 + L2 LINE L2 3118 3313 0 186 290 196 0 chr4 82385112 82385219 -119943128 + L2 LINE L2 3185 3312 -1 22 0 0 0 chr4 82385813 82385835 -119942512 + AT_rich Low_complexity Low_complexity 1 22 0 423 241 56 0 chr4 82385888 82385996 -119942351 - MIR SINE MIR -147 115 2 24 32 0 0 chr4 82387314 82387345 -119941002 + AT_rich Low_complexity Low_complexity 1 31 0 777 281 106 39 chr4 82390072 82390514 -119937833 - LTR33 LTR ERVL 0 521 50 459 181 0 51 chr4 82390677 82390815 -119937532 + C-rich Low_complexity Low_complexity 4 134 0 324 0 0 0 chr4 82390832 82390868 -119937479 + (CA)n Simple_repeat Simple_repeat 1 36 0 24 53 0 0 chr4 82392065 82392103 -119936244 + AT_rich Low_complexity Low_complexity 1 38 0 718 202 124 58 chr4 82392963 82393221 -119935126 + MER58B DNA MER1_type 14 288 -53 1682 164 44 0 chr4 82393629 82393903 -119934444 + AluJb SINE Alu 1 286 -26 370 254 73 27 chr4 82396394 82396504 -119931843 - MER117 DNA MER1_type -82 115 1 22 0 0 0 chr4 82396675 82396697 -119931650 + AT_rich Low_complexity Low_complexity 1 22 0 315 302 161 13 chr4 82396981 82397130 -119931217 + MIR SINE MIR 20 190 -72 309 237 43 0 chr4 82397132 82397225 -119931122 + (TA)n Simple_repeat Simple_repeat 2 98 0 1801 181 3 0 chr4 82397274 82397566 -119930781 - AluJb SINE Alu -19 293 1 220 412 11 11 chr4 82397876 82398058 -119930289 - MIR SINE MIR -33 229 48 379 285 62 14 chr4 82398088 82398232 -119930115 - MIR3 SINE MIR -39 169 19 665 279 113 37 chr4 82398584 82399749 -119928598 - L1MDa LINE L1 -4083 2638 1303 860 250 142 15 chr4 82399831 82400163 -119928184 - MER20B DNA MER1_type -394 389 16 192 167 119 0 chr4 82400673 82400715 -119927632 - L2 LINE L2 -4 3268 3222 529 324 67 9 chr4 82401524 82401734 -119926613 - MIR SINE MIR -4 258 37 448 325 43 6 chr4 82401827 82401990 -119926357 + MIR SINE MIR 20 188 -74 287 288 54 27 chr4 82402140 82402251 -119926096 - L2 LINE L2 -204 3068 2955 316 318 29 59 chr4 82402433 82402603 -119925744 + MIR SINE MIR 19 183 -79 2121 104 3 13 chr4 82403682 82403989 -119924358 - AluSg SINE Alu -4 306 3 243 256 136 15 chr4 82404039 82404238 -119924109 - L1ME4a LINE L1 -13 6108 5886 25 31 0 0 chr4 82404585 82404617 -119923730 + AT_rich Low_complexity Low_complexity 1 32 0 2454 71 0 0 chr4 82405025 82405321 -119923026 - AluY SINE Alu -15 296 1 763 288 34 0 chr4 82406307 82406543 -119921804 - MIR SINE MIR 0 262 19 411 259 43 50 chr4 82406512 82406651 -119921696 + MIR SINE MIR 37 174 -88 * 2495 71 0 0 chr4 82406950 82407261 -119921086 - AluY SINE Alu 0 311 1 1663 200 2 56 chr4 82407616 82408045 -119920302 - MLT2C1 LTR ERVL 0 520 1 1827 176 3 0 chr4 82408403 82408698 -119919649 + AluJb SINE Alu 1 296 -16 216 0 0 0 chr4 82409024 82409048 -119919299 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 766 74 37 0 chr4 82409072 82409180 -119919167 - L1PB1 LINE L1 -1 6150 6039 544 298 86 5 chr4 82410563 82410761 -119917586 - MIR SINE MIR -12 250 37 1139 218 80 7 chr4 82411603 82411892 -119916455 + MER58B DNA MER1_type 24 333 -8 1393 271 87 36 chr4 82411909 82412436 -119915911 + L2 LINE L2 2356 2909 -405 368 208 78 13 chr4 82412439 82412516 -119915831 - L2 LINE L2 -325 2988 2907 219 196 0 20 chr4 82412517 82412568 -119915779 + (TA)n Simple_repeat Simple_repeat 2 51 0 302 274 11 53 chr4 82412721 82412816 -119915531 + L2 LINE L2 3182 3272 0 1256 345 60 37 chr4 82412820 82413911 -119914436 - L2 LINE L2 -463 2851 1735 361 367 50 11 chr4 82413986 82414166 -119914181 + L2 LINE L2 3080 3266 -6 279 206 0 68 chr4 82414744 82414817 -119913530 + MIR3 SINE MIR 123 190 -18 479 330 63 16 chr4 82414866 82415057 -119913290 - MIR3 SINE MIR -5 203 4 2096 124 3 3 chr4 82415180 82415470 -119912877 - AluSx SINE Alu -22 290 1 207 265 0 0 chr4 82415867 82415916 -119912431 + MIR SINE MIR 139 187 -75 269 167 0 17 chr4 82415923 82415983 -119912364 + (TA)n Simple_repeat Simple_repeat 1 59 0 214 250 47 16 chr4 82415983 82416047 -119912300 + MIR SINE MIR 196 261 -1 267 203 0 0 chr4 82416390 82416449 -119911898 + (CATA)n Simple_repeat Simple_repeat 2 60 0 25 0 0 0 chr4 82416962 82416987 -119911360 + AT_rich Low_complexity Low_complexity 1 25 0 204 40 0 0 chr4 82416992 82417017 -119911330 + (CA)n Simple_repeat Simple_repeat 2 26 0 483 309 20 40 chr4 82418331 82418532 -119909815 - MIR SINE MIR -46 216 20 781 171 96 35 chr4 82418548 82418747 -119909600 - MER20 DNA MER1_type -6 213 3 192 318 16 0 chr4 82419692 82419755 -119908592 + L2 LINE L2 3248 3311 -2 300 53 0 0 chr4 82421783 82421821 -119906526 + (TA)n Simple_repeat Simple_repeat 2 39 0 2094 130 20 3 chr4 82422058 82422358 -119905989 - AluSx SINE Alu -7 305 1 238 276 0 0 chr4 82422457 82422515 -119905832 - MIR3 SINE MIR -21 187 130 292 253 161 44 chr4 82422865 82423138 -119905209 - L1ME4a LINE L1 0 6121 5817 22 56 0 0 chr4 82423576 82423612 -119904735 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr4 82423751 82423777 -119904570 + AT_rich Low_complexity Low_complexity 1 26 0 542 180 106 0 chr4 82424118 82424335 -119904012 - L1MA9 LINE L1 -16 6296 5961 388 297 7 35 chr4 82424382 82424527 -119903820 - MIR SINE MIR -67 195 55 189 74 0 0 chr4 82424653 82424680 -119903667 + (GA)n Simple_repeat Simple_repeat 1 27 0 3759 113 77 25 chr4 82425339 82426309 -119902038 - MER11A LTR ERVK 0 1266 1 244 189 57 0 chr4 82426431 82426484 -119901863 + L3 LINE CR1 1519 1574 -3 571 231 145 62 chr4 82427415 82427657 -119900690 - MER45C DNA AcHobo -2 951 690 562 199 110 22 chr4 82427789 82427925 -119900422 - MER45C DNA AcHobo -805 148 1 183 80 0 0 chr4 82429751 82429776 -119898571 + (CCA)n Simple_repeat Simple_repeat 1 25 0 541 234 110 28 chr4 82429778 82429923 -119898424 - MIR SINE MIR -18 244 88 2061 153 3 0 chr4 82430793 82431101 -119897246 + AluJb SINE Alu 1 309 -3 232 339 17 28 chr4 82431122 82431299 -119897048 - HAL1b LINE L1 -773 575 401 186 96 115 0 chr4 82431384 82431436 -119896911 + T-rich Low_complexity Low_complexity 4 61 0 11426 32 4 0 chr4 82431445 82433574 -119894773 - L1PA3 LINE L1 -5 6150 4017 328 266 97 97 chr4 82433575 82434029 -119894318 - HAL1 LINE L1 -1074 1433 980 820 233 73 84 chr4 82434132 82434613 -119893734 + MER39 LTR ERV1 1 637 -70 1196 206 14 5 chr4 82435572 82435791 -119892556 - MER58A DNA MER1_type -3 221 1 485 216 184 5 chr4 82437313 82437493 -119890854 + MIR SINE MIR 26 237 -25 228 67 0 0 chr4 82438397 82438427 -119889920 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 266 57 0 0 chr4 82438708 82438743 -119889604 + Charlie5 DNA MER1_type 2585 2619 0 612 284 53 4 chr4 82438804 82439047 -119889300 - MLT1L LTR MaLR -23 592 338 284 167 0 0 chr4 82439164 82439212 -119889135 - LTR67 LTR ERVL -409 148 101 199 182 45 0 chr4 82439313 82439357 -119888990 + L2 LINE L2 3264 3309 -4 210 350 80 0 chr4 82441919 82442019 -119886328 - L2 LINE L2 -61 3211 3104 282 442 0 0 chr4 82443396 82443482 -119884865 + C-rich Low_complexity Low_complexity 1 86 0 941 415 0 0 chr4 82443527 82443948 -119884399 + C-rich Low_complexity Low_complexity 1 421 0 8375 88 9 0 chr4 82444048 82445213 -119883134 - HERVK9 LTR ERVK -897 5019 3845 203 284 34 3 chr4 82446174 82446308 -119882039 + MER5A DNA MER1_type 9 178 0 393 94 31 0 chr4 82446403 82446467 -119881880 + MER58A DNA MER1_type 159 224 0 239 215 51 25 chr4 82446527 82446606 -119881741 + MLT1J LTR MaLR 382 462 -49 1956 132 3 24 chr4 82446762 82447058 -119881289 - AluJo SINE Alu -22 290 1 23 0 0 0 chr4 82447614 82447637 -119880710 + AT_rich Low_complexity Low_complexity 1 23 0 557 298 55 55 chr4 82448012 82448267 -119880080 - MIR SINE MIR -2 260 6 324 70 0 0 chr4 82449501 82449544 -119878803 + (TG)n Simple_repeat Simple_repeat 2 44 0 200 337 99 10 chr4 82449574 82449675 -119878672 + L2 LINE L2 3158 3267 -5 44124 30 21 2 chr4 82449736 82455770 -119872577 + L1HS LINE L1 2 6155 0 213 65 0 0 chr4 82455770 82455801 -119872546 + (A)n Simple_repeat Simple_repeat 1 31 0 253 237 72 21 chr4 82457005 82457102 -119871245 - L1ME4a LINE L1 -2 6119 6018 21 0 0 0 chr4 82457265 82457286 -119871061 + AT_rich Low_complexity Low_complexity 1 21 0 42777 62 2 1 chr4 82457346 82463491 -119864856 - L1PA5 LINE L1 -5 6149 1 33 25 0 0 chr4 82463712 82463752 -119864595 + AT_rich Low_complexity Low_complexity 1 40 0 2181 68 50 0 chr4 82463846 82464126 -119864221 - AluY SINE Alu -17 294 1 1045 292 90 34 chr4 82464861 82465639 -119862708 - L2 LINE L2 0 3313 2487 4262 165 21 3 chr4 82465857 82466555 -119861792 - MER44D DNA MER2_type 0 605 23 500 211 300 22 chr4 82466680 82466860 -119861487 + MIR SINE MIR 2 231 -31 307 315 69 39 chr4 82469186 82469316 -119859031 + MIR SINE MIR 74 207 -55 207 0 0 0 chr4 82470257 82470280 -119858067 + (T)n Simple_repeat Simple_repeat 1 23 0 500 311 0 0 chr4 82470938 82471070 -119857277 - MIR3 SINE MIR -13 195 64 1350 94 0 0 chr4 82471236 82471407 -119856940 + AluSg/x SINE Alu 132 302 -10 2076 127 3 3 chr4 82471459 82471751 -119856596 - AluSx SINE Alu -12 300 9 418 301 0 42 chr4 82471769 82471912 -119856435 + MIR SINE MIR 126 262 0 977 221 86 0 chr4 82472077 82472299 -119856048 + MIR SINE MIR 20 260 -2 21 0 0 0 chr4 82472815 82472836 -119855511 + AT_rich Low_complexity Low_complexity 1 21 0 2131 121 84 28 chr4 82473004 82473173 -119855174 - THE1C LTR MaLR 0 375 217 201 39 0 0 chr4 82473173 82473199 -119855148 + (GA)n Simple_repeat Simple_repeat 1 26 0 2131 121 84 28 chr4 82473199 82473384 -119854963 - THE1C LTR MaLR -158 217 1 246 179 0 0 chr4 82476413 82476452 -119851895 + MIR SINE MIR 13 51 -211 2212 112 23 0 chr4 82476461 82476777 -119851570 - AluSx SINE Alu 0 323 1 1662 104 5 0 chr4 82476882 82477093 -119851254 - AluSq SINE Alu -101 212 1 361 276 138 56 chr4 82477094 82477243 -119851104 + MIR SINE MIR 41 211 -51 1783 157 93 16 chr4 82477243 82477556 -119850791 - MER1B DNA MER1_type 0 337 1 361 276 138 56 chr4 82477556 82477602 -119850745 + MIR SINE MIR 211 252 -10 205 288 25 75 chr4 82477680 82477760 -119850587 - L2 LINE L2 -47 3225 3150 463 327 55 15 chr4 82477929 82478128 -119850219 + MIR SINE MIR 53 259 -3 465 242 36 52 chr4 82479028 82479222 -119849125 - L2 LINE L2 0 3313 3123 277 234 77 99 chr4 82480865 82481087 -119847260 - L1ME4a LINE L1 -22 6099 5883 845 282 87 31 chr4 82481092 82481507 -119846840 - L1ME4a LINE L1 -273 5848 5411 2052 135 0 26 chr4 82481768 82482080 -119846267 - AluSx SINE Alu -8 304 1 311 211 0 79 chr4 82482935 82483011 -119845336 - MIR SINE MIR -91 171 102 331 235 0 12 chr4 82483945 82484026 -119844321 + L1MA9 LINE L1 6119 6198 -114 252 0 0 0 chr4 82484031 82484059 -119844288 + (TC)n Simple_repeat Simple_repeat 2 29 0 298 212 61 12 chr4 82484059 82484224 -119844123 + (TA)n Simple_repeat Simple_repeat 2 174 0 222 261 52 8 chr4 82484251 82484385 -119843962 + (TA)n Simple_repeat Simple_repeat 1 140 0 301 325 12 0 chr4 82484783 82484866 -119843481 - L2 LINE L2 -3 3310 3227 254 318 143 21 chr4 82485670 82485859 -119842488 + L2 LINE L2 2667 2878 -436 293 215 0 51 chr4 82486428 82486507 -119841840 - L2 LINE L2 -73 3240 3166 * 400 321 73 43 chr4 82486505 82486904 -119841443 + L2 LINE L2 2552 2962 -352 42746 40 24 4 chr4 82487881 82493909 -119834438 - L1PA3 LINE L1 0 6155 1 217 284 104 35 chr4 82494391 82494590 -119833757 - MIR SINE MIR -53 209 2 252 222 19 0 chr4 82494740 82494794 -119833553 - MIR SINE MIR -21 241 187 605 263 40 29 chr4 82494820 82494895 -119833452 + MIR SINE MIR 83 156 -106 2168 197 62 25 chr4 82494895 82495382 -119832965 + MLT1D LTR MaLR 1 505 0 605 263 40 29 chr4 82495382 82495481 -119832866 + MIR SINE MIR 156 259 -3 * 681 246 88 5 chr4 82495427 82495647 -119832700 - MIR SINE MIR -21 241 4 184 203 51 0 chr4 82497177 82497236 -119831111 + CT-rich Low_complexity Low_complexity 2 63 0 549 289 109 41 chr4 82497594 82498206 -119830141 - L1M2 LINE L1 -654 5658 4948 306 0 0 0 chr4 82498206 82498240 -119830107 + (TA)n Simple_repeat Simple_repeat 2 35 0 549 289 109 41 chr4 82498240 82498537 -119829810 - L1M2 LINE L1 -1364 4948 4673 1892 170 0 19 chr4 82498586 82498897 -119829450 + AluJb SINE Alu 3 307 -5 357 82 0 0 chr4 82498897 82498946 -119829401 + (GA)n Simple_repeat Simple_repeat 1 49 0 228 290 0 0 chr4 82498953 82499022 -119829325 - L1M4 LINE L1 -1536 4610 4542 249 279 211 60 chr4 82499936 82500506 -119827841 + L2 LINE L2 1867 2522 -792 198 281 96 59 chr4 82500509 82500644 -119827703 + L2 LINE L2 2625 2764 -550 258 331 82 5 chr4 82500707 82500891 -119827456 + L2 LINE L2 2862 3059 -213 523 176 20 0 chr4 82501238 82501340 -119827007 - MER53 DNA DNA -84 105 2 422 290 48 38 chr4 82502788 82502974 -119825373 - MIR3 SINE MIR -6 202 15 599 283 33 16 chr4 82502997 82503181 -119825166 + MIR SINE MIR 32 218 -44 309 277 88 34 chr4 82505674 82505822 -119822525 - L1ME4a LINE L1 -81 6040 5885 261 119 0 0 chr4 82506684 82506726 -119821621 + (TC)n Simple_repeat Simple_repeat 1 42 0 439 285 95 59 chr4 82507174 82507427 -119820920 - MIR SINE MIR 0 262 1 2076 102 27 10 chr4 82507606 82507901 -119820446 + AluSx SINE Alu 1 300 -12 269 302 58 0 chr4 82508067 82508153 -119820194 - MIR SINE MIR -88 174 84 195 100 0 0 chr4 82508415 82508445 -119819902 + (TG)n Simple_repeat Simple_repeat 1 30 0 2176 4 0 0 chr4 82508613 82508844 -119819503 - AluYa5 SINE Alu -1 310 80 559 266 25 38 chr4 82509065 82509223 -119819124 - L2 LINE L2 0 3313 3158 220 247 93 21 chr4 82509886 82509983 -119818364 - MER91C DNA MER1_type -34 106 3 457 200 0 10 chr4 82510218 82510318 -119818029 - MER5A DNA MER1_type -87 102 4 677 157 126 6 chr4 82510499 82510658 -119817689 + MER53 DNA DNA 10 187 -2 207 0 0 0 chr4 82510983 82511006 -119817341 + (T)n Simple_repeat Simple_repeat 1 23 0 741 305 91 57 chr4 82511898 82512736 -119815611 - L2 LINE L2 -50 3222 2356 282 348 105 11 chr4 82512792 82513068 -119815279 - L2 LINE L2 -921 2393 2092 195 343 28 98 chr4 82513161 82513304 -119815043 - L2 LINE L2 -3 3269 3137 758 273 11 0 chr4 82513338 82513514 -119814833 + AluJo SINE Alu 122 299 -13 3361 61 15 0 chr4 82514940 82515350 -119812997 + HERVK11 LTR ERVK 6350 6765 -1188 * 8312 58 3 0 chr4 82515334 82516331 -119812016 + HERVK11 LTR ERVK 6954 7953 0 9316 52 6 2 chr4 82516331 82517398 -119810949 + MER11C LTR ERVK 1 1071 0 26 30 0 0 chr4 82517407 82517440 -119810907 + AT_rich Low_complexity Low_complexity 1 33 0 183 269 77 19 chr4 82518003 82518055 -119810292 + L2 LINE L2 3203 3257 -56 2781 204 49 2 chr4 82518107 82518640 -119809707 - MER74A LTR ERVL 0 558 1 572 304 41 0 chr4 82518783 82518954 -119809393 - MIR SINE MIR -4 258 81 228 35 0 0 chr4 82520074 82520103 -119808244 + (GA)n Simple_repeat Simple_repeat 2 30 0 1381 180 63 20 chr4 82520113 82520368 -119807979 - AluJb SINE Alu -46 266 1 255 314 29 51 chr4 82520400 82520575 -119807772 - L1ME4a LINE L1 -5 6116 5946 2319 110 3 0 chr4 82520639 82520947 -119807400 - AluSc SINE Alu 0 309 1 1701 181 3 16 chr4 82521035 82521339 -119807008 - AluJo SINE Alu -12 300 1 355 233 81 0 chr4 82521431 82521517 -119806830 - MLT1G LTR MaLR 0 555 463 718 280 62 31 chr4 82521560 82521849 -119806498 - MLT1G LTR MaLR -255 335 38 213 301 114 41 chr4 82524655 82524778 -119803569 - L2 LINE L2 0 3313 3182 193 296 111 43 chr4 82526044 82526206 -119802141 - L2 LINE L2 -518 2796 2624 387 258 45 0 chr4 82526781 82526870 -119801477 - L2 LINE L2 -8 3264 3172 2152 164 26 26 chr4 82526901 82527290 -119801057 - MLT1B LTR MaLR -1 389 1 183 308 44 44 chr4 82527419 82527510 -119800837 - L2 LINE L2 -224 3048 2958 271 197 66 13 chr4 82527835 82527911 -119800436 - MER116 DNA Mariner 0 80 1 247 345 63 24 chr4 82527911 82528117 -119800230 - L2 LINE L2 -790 2524 2311 180 0 0 0 chr4 82529349 82529369 -119798978 + (CAAAAA)n Simple_repeat Simple_repeat 5 24 0 492 246 0 0 chr4 82529376 82529486 -119798861 + MER103 DNA DNA 8 117 -49 219 69 0 0 chr4 82529693 82529722 -119798625 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 673 284 44 32 chr4 82530459 82530709 -119797638 - MIR SINE MIR 0 262 10 21 0 0 0 chr4 82532035 82532056 -119796291 + AT_rich Low_complexity Low_complexity 1 21 0 528 302 59 59 chr4 82532431 82532686 -119795661 - MIR SINE MIR -2 260 6 324 70 0 0 chr4 82533920 82533963 -119794384 + (TG)n Simple_repeat Simple_repeat 2 44 0 193 337 99 10 chr4 82533991 82534092 -119794255 + L2 LINE L2 3158 3267 -5 225 65 0 0 chr4 82536966 82536997 -119791350 + (CA)n Simple_repeat Simple_repeat 2 32 0 234 380 43 21 chr4 82537117 82537351 -119790996 + L2 LINE L2 2872 3110 -162 1476 208 7 3 chr4 82537716 82538010 -119790337 + AluJo SINE Alu 1 295 -17 305 314 57 38 chr4 82538314 82538524 -119789823 + L1ME4a LINE L1 5388 5601 -520 395 274 103 29 chr4 82538559 82538734 -119789613 + MIR SINE MIR 64 251 -11 512 271 116 52 chr4 82538780 82539220 -119789127 + L1ME4a LINE L1 5654 6121 0 1160 243 0 0 chr4 82542436 82542654 -119785693 - LTR28 LTR ERV1 0 1020 803 1893 186 110 33 chr4 82542672 82543214 -119785133 - LTR28 LTR ERV1 -387 633 1 358 294 47 7 chr4 82544349 82544501 -119783846 + MIR3 SINE MIR 46 202 -6 613 279 31 6 chr4 82544967 82545128 -119783219 + MIR SINE MIR 12 176 -86 201 39 0 0 chr4 82545831 82545857 -119782490 + (A)n Simple_repeat Simple_repeat 1 26 0 1537 107 0 19 chr4 82545857 82546073 -119782274 + AluSg/x SINE Alu 84 295 -15 1711 161 13 26 chr4 82547216 82547521 -119780826 + AluJb SINE Alu 1 301 -11 879 350 32 39 chr4 82547683 82548218 -119780129 - L3 LINE CR1 -620 957 427 347 333 20 33 chr4 82548606 82548756 -119779591 - L2 LINE L2 -1 3312 3165 393 208 40 87 chr4 82548849 82549022 -119779325 + L1MEd LINE L1 1050 1214 -4905 728 304 46 29 chr4 82549051 82549400 -119778947 - L2 LINE L2 -592 2722 2368 201 273 36 0 chr4 82550246 82550301 -119778046 - L2 LINE L2 0 3313 3257 473 259 44 93 chr4 82550318 82550523 -119777824 + MER102b DNA MER1_type 1 195 -146 280 314 21 90 chr4 82550525 82550713 -119777634 + MER102b DNA MER1_type 162 336 -5 219 88 0 0 chr4 82551166 82551200 -119777147 + (T)n Simple_repeat Simple_repeat 1 34 0 622 282 28 59 chr4 82551551 82551806 -119776541 - MIR SINE MIR -10 252 6 252 241 0 0 chr4 82551905 82551963 -119776384 + (CAA)n Simple_repeat Simple_repeat 2 59 0 180 267 86 52 chr4 82551968 82552084 -119776263 + MER5B DNA MER1_type 55 174 -4 369 0 0 0 chr4 82553540 82553581 -119774766 + (TAA)n Simple_repeat Simple_repeat 1 41 0 2012 108 21 4 chr4 82553589 82553896 -119774451 + AluSp SINE Alu 1 312 0 410 309 50 7 chr4 82553964 82554103 -119774244 - MIR3 SINE MIR -56 152 8 716 251 78 9 chr4 82555341 82555560 -119772787 - MIR SINE MIR -17 245 12 1902 129 98 0 chr4 82556284 82556601 -119771746 - MER7A DNA MER2_type 0 346 1 29 0 0 0 chr4 82556608 82556637 -119771710 + AT_rich Low_complexity Low_complexity 1 29 0 2215 103 0 10 chr4 82556802 82557092 -119771255 + AluSx SINE Alu 1 287 -25 511 266 42 14 chr4 82557858 82558001 -119770346 + MER5B DNA MER1_type 3 149 -29 4213 155 65 9 chr4 82558007 82559107 -119769240 - L1MB7 LINE L1 -17 6167 5005 551 271 187 5 chr4 82561012 82561226 -119767121 - MIR SINE MIR 0 262 10 1814 155 52 0 chr4 82561412 82561683 -119766664 - AluSx SINE Alu -27 285 1 45 34 0 0 chr4 82562371 82562430 -119765917 + AT_rich Low_complexity Low_complexity 1 59 0 1051 215 86 40 chr4 82562745 82563071 -119765276 - L1ME1 LINE L1 -5 6161 5821 732 314 76 0 chr4 82564419 82564655 -119763692 - MIR SINE MIR -3 259 6 1816 164 0 44 chr4 82564705 82565023 -119763324 + AluJb SINE Alu 1 304 -8 22 35 0 0 chr4 82565660 82565689 -119762658 + AT_rich Low_complexity Low_complexity 1 29 0 2274 101 3 0 chr4 82565697 82565994 -119762353 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr4 82566249 82566270 -119762077 + AT_rich Low_complexity Low_complexity 1 21 0 2583 58 0 6 chr4 82568137 82568449 -119759898 + AluY SINE Alu 1 310 -1 1566 218 0 32 chr4 82568609 82568917 -119759430 + AluJb SINE Alu 1 298 -14 452 134 21 21 chr4 82568937 82569034 -119759313 + MER113 DNA MER1_type? 19 115 -406 512 319 43 11 chr4 82570374 82570562 -119757785 - MIR SINE MIR -34 228 35 23 0 0 0 chr4 82573102 82573125 -119755222 + AT_rich Low_complexity Low_complexity 1 23 0 5817 166 54 54 chr4 82573130 82575304 -119753043 - L1MA9 LINE L1 -9 7722 5549 2507 239 47 17 chr4 82575304 82576691 -119751656 - L1MA9 LINE L1 -3348 4217 2785 4430 242 62 42 chr4 82576693 82578204 -119750143 - L1MA9 LINE L1 -4589 2907 1366 378 182 40 71 chr4 82578412 82578511 -119749836 - MER5A DNA MER1_type -54 135 40 218 274 35 97 chr4 82578414 82578527 -119749820 + MER5A DNA MER1_type 68 173 -16 * 2183 117 7 0 chr4 82578796 82579087 -119749260 + AluSq SINE Alu 1 293 -20 361 348 98 79 chr4 82580081 82580500 -119747847 + L2 LINE L2 2838 3264 -8 211 234 0 0 chr4 82580617 82580664 -119747683 + (TA)n Simple_repeat Simple_repeat 2 48 0 677 293 59 54 chr4 82581401 82582296 -119746051 + L1MEd LINE L1 4 932 -5187 2072 167 103 16 chr4 82582408 82582919 -119745428 - L1MD1 LINE L1 -54 7750 6083 222 235 20 0 chr4 82582945 82582996 -119745351 + MIR3 SINE MIR 150 201 -7 1430 153 188 0 chr4 82583546 82583854 -119744493 - MER47A DNA MER2_type 0 366 1 272 351 94 19 chr4 82584328 82584636 -119743711 + L2 LINE L2 2307 2637 -677 230 346 0 58 chr4 82584829 82584933 -119743414 + L2 LINE L2 3170 3267 -5 225 132 0 0 chr4 82585576 82585614 -119742733 + (TCTCCC)n Simple_repeat Simple_repeat 5 42 0 335 308 48 0 chr4 82586022 82586126 -119742221 + MIR SINE MIR 51 159 -103 2828 73 3 0 chr4 82586157 82586511 -119741836 - THE1A LTR MaLR 0 355 1 274 271 161 8 chr4 82586518 82586636 -119741711 - MIR SINE MIR -76 186 51 1975 127 71 6 chr4 82586690 82587029 -119741318 + MER46B DNA MER2_type 1 236 0 1739 144 59 35 chr4 82587802 82588142 -119740205 - THE1B LTR MaLR -1 363 16 685 265 128 23 chr4 82588390 82588609 -119739738 + MIR SINE MIR 19 260 -2 1724 137 59 42 chr4 82588686 82588993 -119739354 + AluJb SINE Alu 1 312 0 315 291 71 56 chr4 82588993 82589526 -119738821 + L1M4 LINE L1 2761 3301 -2845 25 65 0 0 chr4 82590123 82590169 -119738178 + AT_rich Low_complexity Low_complexity 1 46 0 238 271 29 0 chr4 82590169 82590239 -119738108 - L1M4 LINE L1 -1236 4910 4839 186 160 0 0 chr4 82590240 82590290 -119738057 + A-rich Low_complexity Low_complexity 1 50 0 624 280 148 20 chr4 82590384 82590741 -119737606 - MARNA DNA Mariner -143 443 41 2407 82 3 3 chr4 82590953 82591256 -119737091 - AluSq SINE Alu -10 303 1 513 313 77 0 chr4 82591723 82591905 -119736442 + MIR SINE MIR 67 262 0 331 310 69 15 chr4 82592354 82592557 -119735790 + L1ME4a LINE L1 5757 5970 -151 188 330 10 41 chr4 82593106 82593203 -119735144 - L3 LINE CR1 -15 1562 1469 221 311 20 125 chr4 82593342 82593590 -119734757 - L2 LINE L2 -225 3047 2826 417 323 46 73 chr4 82594580 82594840 -119733507 - L2 LINE L2 -6 3266 3014 278 226 32 0 chr4 82594862 82594924 -119733423 - MER5A DNA MER1_type 0 189 126 1116 60 0 7 chr4 82594925 82595076 -119733271 - L1PB1 LINE L1 -138 6013 5864 922 117 0 14 chr4 82595076 82595220 -119733127 + L1PB1 LINE L1 6008 6150 -1 25 0 0 0 chr4 82595220 82595245 -119733102 + AT_rich Low_complexity Low_complexity 1 25 0 684 171 29 29 chr4 82595245 82595385 -119732962 - MER5A DNA MER1_type -49 140 1 518 330 88 54 chr4 82595399 82595787 -119732560 - L2 LINE L2 -337 2977 2577 2069 160 20 68 chr4 82595800 82596287 -119732060 + L1MB2 LINE L1 5669 6132 -39 846 239 142 3 chr4 82596468 82596786 -119731561 - L2 LINE L2 -430 2884 2523 402 98 76 54 chr4 82598312 82598404 -119729943 + FRAM SINE Alu 67 160 -16 2142 123 95 18 chr4 82599492 82599741 -119728606 - MSTA LTR MaLR 0 428 137 198 0 0 0 chr4 82599741 82599763 -119728584 + (CTCA)n Simple_repeat Simple_repeat 3 24 0 2142 123 95 18 chr4 82599763 82599903 -119728444 - MSTA LTR MaLR -291 137 9 3007 76 26 67 chr4 82600685 82600727 -119727620 - MLT2A1 LTR ERVL 0 444 402 408 20 0 0 chr4 82600727 82600776 -119727571 + (TA)n Simple_repeat Simple_repeat 1 49 0 3007 76 26 67 chr4 82600776 82601003 -119727344 - MLT2A1 LTR ERVL -42 402 199 2248 106 0 0 chr4 82601003 82601295 -119727052 - AluSq SINE Alu -21 292 1 3007 76 26 67 chr4 82601295 82601487 -119726860 - MLT2A1 LTR ERVL -245 199 1 368 317 0 10 chr4 82602051 82602155 -119726192 - L2 LINE L2 -3 3269 3167 297 294 72 64 chr4 82602484 82602719 -119725628 - L2 LINE L2 -476 2838 2602 2226 104 40 0 chr4 82603002 82603300 -119725047 - AluSg SINE Alu 0 310 1 1419 197 56 3 chr4 82604508 82604792 -119723555 + AluJo SINE Alu 1 299 -13 218 236 274 0 chr4 82604842 82604948 -119723399 + MIR SINE MIR 11 145 -117 279 0 0 0 chr4 82604948 82604979 -119723368 + (TAA)n Simple_repeat Simple_repeat 3 33 0 26 88 0 0 chr4 82605570 82605638 -119722709 + AT_rich Low_complexity Low_complexity 1 68 0 871 160 8 6 chr4 82605702 82605945 -119722402 + AluJb SINE Alu 2 291 -21 194 304 63 13 chr4 82606770 82606849 -119721498 + MIR3 SINE MIR 72 154 -54 2561 162 36 0 chr4 82606869 82607282 -119721065 + MSTC LTR MaLR 1 428 0 2195 98 0 7 chr4 82608174 82608471 -119719876 - AluY SINE Alu -16 295 1 324 94 0 0 chr4 82608874 82608927 -119719420 + (TG)n Simple_repeat Simple_repeat 1 53 0 229 159 111 32 chr4 82610782 82610845 -119717502 - L1ME4a LINE L1 -3 6118 6051 445 265 117 30 chr4 82610856 82611086 -119717261 - MARNA DNA Mariner -38 548 299 22 35 0 0 chr4 82611573 82611602 -119716745 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 82611712 82611741 -119716606 + AT_rich Low_complexity Low_complexity 1 29 0 601 310 107 8 chr4 82611836 82612097 -119716250 + L3 LINE CR1 1263 1549 -28 605 257 8 2 chr4 82614173 82614321 -119714026 + MIR SINE MIR 7 152 -59 736 281 55 36 chr4 82614464 82614902 -119713445 + L1ME3A LINE L1 4213 4658 -1488 1133 157 9 52 chr4 82614906 82615144 -119713203 + AluJb SINE Alu 84 312 0 1347 279 96 21 chr4 82615241 82615305 -119713042 + L1ME3A LINE L1 4805 4863 -1307 2095 141 3 0 chr4 82615305 82615602 -119712745 + AluSx SINE Alu 1 298 -14 1347 279 96 21 chr4 82615602 82616562 -119711785 + L1ME3A LINE L1 4863 5902 -268 233 346 62 32 chr4 82616203 82616608 -119711739 + L1MA5A LINE L1 5526 5942 -355 * 185 235 157 0 chr4 82618488 82618539 -119709808 - L3 LINE CR1 -3 1574 1516 204 317 176 42 chr4 82619123 82619265 -119709082 - L2 LINE L2 -2 3270 3110 364 269 32 0 chr4 82619360 82619453 -119708894 + MIR SINE MIR 39 134 -128 22 0 0 0 chr4 82619453 82619475 -119708872 + AT_rich Low_complexity Low_complexity 1 22 0 631 248 0 8 chr4 82619511 82619644 -119708703 - FLAM_A SINE Alu -1 132 1 2861 13 0 6 chr4 82619863 82620181 -119708166 - AluYb8 SINE Alu -2 316 1 564 247 36 96 chr4 82621289 82621540 -119706807 - L2 LINE L2 -1 3312 3077 325 297 54 92 chr4 82622155 82622394 -119705953 - L2 LINE L2 -126 3146 2917 897 193 10 31 chr4 82622559 82622751 -119705596 - MER5A DNA MER1_type -1 188 1 1897 154 0 29 chr4 82622916 82623222 -119705125 + AluJo SINE Alu 1 297 -15 1910 159 0 20 chr4 82623703 82624004 -119704343 - AluJb SINE Alu -17 295 1 1830 199 53 26 chr4 82628890 82629306 -119699041 - LTR40c LTR ERVL 0 465 39 218 217 0 0 chr4 82630311 82630357 -119697990 + T-rich Low_complexity Low_complexity 1 46 0 196 358 60 0 chr4 82632333 82632400 -119695947 + L2 LINE L2 3193 3263 -9 191 297 95 40 chr4 82632665 82632739 -119695608 - L2 LINE L2 -86 3186 3109 188 326 135 57 chr4 82632893 82633365 -119694982 - L2 LINE L2 -341 2931 2419 1575 156 52 48 chr4 82633397 82633686 -119694661 + AluJo SINE Alu 1 290 -22 897 273 88 58 chr4 82633821 82634231 -119694116 - L2 LINE L2 -81 3232 2811 274 146 0 0 chr4 82635106 82635147 -119693200 + AluSq/x SINE Alu 108 148 -155 250 233 67 50 chr4 82635752 82635872 -119692475 - MLT1J1 LTR MaLR 0 446 325 376 313 98 41 chr4 82635872 82636027 -119692320 - MLT1J LTR MaLR -170 341 196 2141 145 3 0 chr4 82636027 82636338 -119692009 - AluSx SINE Alu 0 312 1 376 313 98 41 chr4 82636338 82636498 -119691849 - MLT1J LTR MaLR -315 196 8 256 300 20 30 chr4 82636605 82636705 -119691642 + MER20 DNA MER1_type 102 200 -19 1432 156 62 0 chr4 82638355 82638598 -119689749 + L1PA16 LINE L1 5891 6148 -18 225 219 0 0 chr4 82638889 82638930 -119689417 + MER5B DNA MER1_type 1 41 -137 455 221 25 76 chr4 82638940 82639098 -119689249 + MER5B DNA MER1_type 19 168 -10 205 237 0 0 chr4 82639135 82639173 -119689174 + polypyrimidine Low_complexity Low_complexity 1 38 0 191 138 0 0 chr4 82639173 82639202 -119689145 - L2 LINE L2 -9 3263 3235 1939 161 161 24 chr4 82639535 82639944 -119688403 - MLT1C LTR MaLR -2 465 1 2112 133 70 21 chr4 82640449 82640780 -119687567 - MER7A DNA MER2_type -1 345 1 437 259 62 0 chr4 82640829 82640941 -119687406 - L2 LINE L2 -4 3309 3191 528 294 26 61 chr4 82641250 82641481 -119686866 + MIR SINE MIR 24 246 -16 950 207 11 5 chr4 82641527 82641715 -119686632 + L1ME1 LINE L1 5522 5710 -456 578 222 49 127 chr4 82641724 82641984 -119686363 + L1ME1 LINE L1 5866 6098 -68 2143 126 0 22 chr4 82641984 82642302 -119686045 + AluSx SINE Alu 2 312 0 578 222 49 127 chr4 82642302 82642365 -119685982 + L1ME1 LINE L1 6098 6164 -2 1033 300 55 43 chr4 82645092 82645663 -119682684 - L2 LINE L2 0 3313 2730 635 285 79 5 chr4 82646384 82646598 -119681749 + MIR SINE MIR 21 250 -12 26 30 0 0 chr4 82646804 82646837 -119681510 + AT_rich Low_complexity Low_complexity 1 33 0 7524 117 13 0 chr4 82646837 82648195 -119680152 - L1MA2 LINE L1 0 6304 4928 329 315 210 0 chr4 82648208 82648370 -119679977 + MIR SINE MIR 53 248 -14 324 0 0 0 chr4 82648383 82648419 -119679928 + (CAT)n Simple_repeat Simple_repeat 1 36 0 212 0 36 0 chr4 82649633 82649661 -119678686 + (TTG)n Simple_repeat Simple_repeat 2 30 0 353 253 89 75 chr4 82650201 82650347 -119678000 - MLT1J LTR MaLR -36 475 328 440 198 0 25 chr4 82650402 82650483 -119677864 - MER2 DNA MER2_type 0 345 267 2162 112 0 10 chr4 82650652 82650947 -119677400 + AluSq SINE Alu 1 292 -21 306 372 33 0 chr4 82651441 82651562 -119676785 - L2 LINE L2 -5 3267 3143 792 235 63 59 chr4 82651762 82652017 -119676330 + MIR SINE MIR 4 259 -3 1646 80 29 38 chr4 82652303 82652542 -119675805 - THE1B LTR MaLR -127 237 1 1018 272 75 56 chr4 82652612 82653292 -119675055 + L1ME3 LINE L1 5256 5948 -214 1671 181 7 10 chr4 82653422 82653732 -119674615 - AluJb SINE Alu -3 309 1 1436 152 0 0 chr4 82653884 82654115 -119674232 + MER41E LTR ERV1 1 231 -281 755 243 52 17 chr4 82654564 82654902 -119673445 + L1MC4a LINE L1 5126 5481 -747 897 168 7 0 chr4 82654903 82655046 -119673301 + FAM SINE Alu 21 164 -21 857 271 160 3 chr4 82655052 82655384 -119672963 + L1MC4a LINE L1 5466 5849 -1959 222 37 0 0 chr4 82656078 82656105 -119672242 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1565 200 4 0 chr4 82656108 82656388 -119671959 - AluJb SINE Alu -29 283 3 457 321 73 24 chr4 82659055 82659285 -119669062 + MIR SINE MIR 10 252 -10 203 340 20 106 chr4 82660762 82661065 -119667282 - L2 LINE L2 -1 3271 2995 460 309 17 22 chr4 82661236 82661414 -119666933 - L2 LINE L2 -1317 1997 1821 321 172 0 189 chr4 82662918 82663040 -119665307 + MIR SINE MIR 164 262 0 336 352 68 0 chr4 82663668 82663844 -119664503 + MIR SINE MIR 20 207 -55 22 56 0 0 chr4 82664129 82664165 -119664182 + AT_rich Low_complexity Low_complexity 1 36 0 1370 144 14 0 chr4 82664992 82665200 -119663147 + AluJo SINE Alu 1 211 -101 483 284 209 5 chr4 82665418 82665619 -119662728 - MIR SINE MIR -10 252 11 195 250 0 96 chr4 82665663 82665715 -119662632 + L2 LINE L2 3245 3291 -22 354 282 109 18 chr4 82665812 82665922 -119662425 - MIR SINE MIR -111 151 32 1866 187 0 0 chr4 82665932 82666237 -119662110 + AluJo SINE Alu 1 305 -7 611 245 43 12 chr4 82666384 82666547 -119661800 + MIR SINE MIR 87 254 -8 355 293 84 58 chr4 82667240 82667431 -119660916 + MIR SINE MIR 18 213 -49 185 280 0 0 chr4 82667479 82667529 -119660818 + L2 LINE L2 3262 3311 -2 506 333 12 0 chr4 82667747 82667915 -119660432 + MIR SINE MIR 93 262 0 291 85 0 0 chr4 82668545 82668592 -119659755 + (TA)n Simple_repeat Simple_repeat 1 47 0 217 372 21 21 chr4 82669170 82669264 -119659083 + L2 LINE L2 2985 3078 -235 214 191 0 0 chr4 82670362 82670404 -119657943 + T-rich Low_complexity Low_complexity 1 42 0 1743 165 58 0 chr4 82670587 82670896 -119657451 + MER2 DNA MER2_type 1 327 -18 583 239 89 95 chr4 82671785 82672278 -119656069 - L1MC4 LINE L1 0 8042 7553 756 205 93 0 chr4 82673067 82673218 -119655129 + FAM SINE Alu 1 165 -10 481 187 47 19 chr4 82673326 82673433 -119654914 - MLT1J2 LTR MaLR -281 169 60 357 364 72 45 chr4 82674021 82674395 -119653952 + L2 LINE L2 2877 3260 -12 1001 304 76 31 chr4 82674805 82675374 -119652973 - L2 LINE L2 0 3313 2711 3063 199 94 7 chr4 82676824 82677422 -119650925 - MER82 DNA MER2_type -1 652 3 270 0 0 0 chr4 82677472 82677502 -119650845 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 216 301 0 80 chr4 82677502 82677615 -119650732 - L2 LINE L2 -19 3294 3191 1547 271 95 25 chr4 82677706 82678360 -119649987 - L2 LINE L2 -1336 1978 1279 2175 217 39 42 chr4 82678398 82678578 -119649769 - L1ME1 LINE L1 -2 6164 5985 817 284 44 54 chr4 82678578 82679075 -119649272 - L1MA8 LINE L1 -295 5996 5505 767 297 134 3 chr4 82679082 82679469 -119648878 - L2 LINE L2 -2360 954 517 294 172 10 91 chr4 82679563 82679662 -119648685 - L1ME3A LINE L1 -112 6058 5968 645 152 0 0 chr4 82679748 82679847 -119648500 - Tigger7 DNA MER2_type 0 2587 2489 * 1488 228 0 4 chr4 82679845 82680113 -119648234 - Tigger7 DNA MER2_type -466 267 1 281 256 75 31 chr4 82680113 82680273 -119648074 - L1ME3A LINE L1 -243 5927 5761 317 278 9 52 chr4 82680359 82680474 -119647873 - L2 LINE L2 -2788 526 417 598 135 0 10 chr4 82680672 82680768 -119647579 + L1P LINE L1 4874 4968 -1178 * 7223 88 1 1 chr4 82680757 82681741 -119646606 - L1P LINE L1 -1257 4889 3906 473 222 64 94 chr4 82681744 82681915 -119646432 + L2 LINE L2 1314 1479 -1835 372 146 0 0 chr4 82681919 82681974 -119646373 + MER58 DNA MER1_type 2350 2404 -16 342 326 28 28 chr4 82682383 82682524 -119645823 + MIR SINE MIR 37 177 -85 198 213 0 43 chr4 82682982 82683029 -119645318 + MIR SINE MIR 209 253 -9 187 255 0 0 chr4 82684292 82684343 -119644004 + L2 LINE L2 3263 3313 0 274 359 92 37 chr4 82684854 82685291 -119643056 + L2 LINE L2 2812 3272 0 337 255 261 13 chr4 82686923 82687076 -119641271 + MIR SINE MIR 23 213 -49 878 230 130 16 chr4 82687166 82687488 -119640859 - LTR16A LTR ERVL 0 450 92 2286 107 0 3 chr4 82687974 82688272 -119640075 + AluSx SINE Alu 1 297 -15 2363 131 38 14 chr4 82689745 82690111 -119638236 - THE1C LTR MaLR 0 375 1 244 226 0 38 chr4 82690877 82690930 -119637417 + L2 LINE L2 3211 3261 -11 845 192 7 7 chr4 82691160 82691306 -119637041 + FRAM SINE Alu 1 146 -30 279 0 0 0 chr4 82691311 82691342 -119637005 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2844 156 119 67 chr4 82691583 82691895 -119636452 - L1MA9 LINE L1 -44 6268 5957 734 252 66 47 chr4 82691895 82692319 -119636028 - L1MC1 LINE L1 -407 5926 5495 575 299 45 5 chr4 82692322 82692523 -119635824 + L2 LINE L2 3103 3311 -2 492 295 87 80 chr4 82692523 82692835 -119635512 - L2 LINE L2 -379 2935 2622 525 299 138 32 chr4 82692848 82693226 -119635121 - L2 LINE L2 -895 2419 2002 216 287 103 82 chr4 82694085 82694841 -119633506 + L2 LINE L2 1789 2560 -754 3558 125 61 2 chr4 82694954 82695481 -119632866 + LTR64 LTR ERVK 1 558 0 231 274 20 49 chr4 82695483 82695585 -119632762 + L1ME4a LINE L1 5967 6065 -56 593 138 198 52 chr4 82695874 82695990 -119632357 - FLAM_C SINE Alu 0 133 1 313 245 29 29 chr4 82697083 82697185 -119631162 + MIR SINE MIR 68 169 -93 331 265 176 0 chr4 82697620 82697756 -119630591 - MIR SINE MIR 0 262 103 279 309 32 0 chr4 82698841 82698935 -119629412 + MIR SINE MIR 58 154 -108 231 315 42 77 chr4 82698943 82699037 -119629310 - L2 LINE L2 0 3313 3224 2357 100 0 0 chr4 82699037 82699337 -119629010 + AluSx SINE Alu 1 300 -12 231 315 42 77 chr4 82699337 82699385 -119628962 - L2 LINE L2 -89 3224 3176 194 125 0 0 chr4 82699419 82699451 -119628896 - MIR SINE MIR -66 196 165 255 281 0 0 chr4 82699682 82699746 -119628601 + L2 LINE L2 3245 3308 -5 336 314 75 13 chr4 82700077 82700236 -119628111 + MIR SINE MIR 53 221 -41 1102 268 74 8 chr4 82700340 82700691 -119627656 + LTR16C LTR ERVL 45 418 -73 210 259 0 0 chr4 82701037 82701091 -119627256 + GA-rich Low_complexity Low_complexity 1 54 0 1927 181 26 17 chr4 82701817 82702199 -119626148 + MLT2D LTR ERVL 1 480 -40 233 189 28 9 chr4 82702226 82702332 -119626015 + (TA)n Simple_repeat Simple_repeat 1 108 0 352 222 33 0 chr4 82702343 82702496 -119625851 + (TA)n Simple_repeat Simple_repeat 1 158 0 2500 97 11 42 chr4 82702504 82702886 -119625461 + L1PB1 LINE L1 5782 6151 0 617 170 54 0 chr4 82702897 82703009 -119625338 - ORSL DNA AcHobo -157 118 1 1085 248 175 26 chr4 82703618 82704041 -119624306 + L2 LINE L2 2828 3313 0 232 245 264 57 chr4 82704242 82704348 -119623999 - MIR3 SINE MIR -66 142 15 2160 125 10 0 chr4 82704353 82704656 -119623691 - AluSc SINE Alu -2 307 2 23 0 0 0 chr4 82704759 82704782 -119623565 + AT_rich Low_complexity Low_complexity 1 23 0 345 140 18 0 chr4 82704782 82704839 -119623508 - AluJb SINE Alu -170 132 75 2152 86 26 53 chr4 82705597 82705936 -119622411 - L1MA2 LINE L1 -4 6300 5971 1024 74 0 0 chr4 82705936 82706071 -119622276 + L1MA2 LINE L1 5844 5978 -327 462 252 126 19 chr4 82706220 82706379 -119621968 - MLT1J2 LTR MaLR -5 445 270 388 324 145 6 chr4 82706521 82706700 -119621647 - MIR SINE MIR -13 249 46 192 308 122 19 chr4 82708742 82708898 -119619449 - L2 LINE L2 -447 2867 2696 238 256 37 12 chr4 82709442 82709524 -119618823 + (CATA)n Simple_repeat Simple_repeat 3 86 0 1899 216 34 0 chr4 82709553 82709993 -119618354 - L1ME1 LINE L1 -5 6161 5707 879 238 29 8 chr4 82710038 82710282 -119618065 - L1ME1 LINE L1 -902 5244 4996 222 353 112 0 chr4 82710414 82710530 -119617817 - MIR SINE MIR -114 148 20 665 296 48 6 chr4 82710694 82710931 -119617416 + MIR SINE MIR 1 256 -6 22 0 0 0 chr4 82711015 82711037 -119617310 + AT_rich Low_complexity Low_complexity 1 22 0 194 305 51 0 chr4 82711176 82711235 -119617112 - L3b LINE CR1 -134 1449 1388 257 326 12 12 chr4 82711368 82711454 -119616893 - MIR SINE MIR -100 108 23 287 291 99 26 chr4 82711495 82711646 -119616701 - L3b LINE CR1 -288 1295 1134 189 195 0 0 chr4 82712471 82712512 -119615835 + T-rich Low_complexity Low_complexity 1 41 0 622 300 25 38 chr4 82713363 82713600 -119614747 - MIR SINE MIR -18 244 11 1150 109 0 0 chr4 82713659 82713806 -119614541 + AluSg/x SINE Alu 148 294 -18 381 240 150 131 chr4 82713819 82714178 -119614169 + Charlie8 DNA MER1_type 1 176 -2241 2249 167 106 18 chr4 82714850 82715245 -119613102 - Tigger2a DNA MER2_type 0 434 5 21879 114 6 3 chr4 82715628 82719495 -119608852 + L1PA7 LINE L1 2297 6154 0 2347 162 42 5 chr4 82719958 82720365 -119607982 - MSTB1 LTR MaLR 0 432 11 359 319 75 14 chr4 82720603 82720887 -119607460 - L1MC/D LINE L1 -631 5543 5258 24 0 0 0 chr4 82721338 82721362 -119606985 + AT_rich Low_complexity Low_complexity 1 24 0 620 299 59 14 chr4 82723228 82723449 -119604898 - MIR SINE MIR -14 248 18 1687 100 92 8 chr4 82723653 82723904 -119604443 + L1PA7 LINE L1 5879 6150 -4 2357 94 13 0 chr4 82723904 82724202 -119604145 + AluSp SINE Alu 1 302 -11 1204 179 5 0 chr4 82724519 82724738 -119603609 - AluJb SINE Alu 0 305 86 5872 79 1 1 chr4 82726644 82727395 -119600952 - L1PA6 LINE L1 -2 6152 5402 36519 100 6 9 chr4 82727398 82732558 -119595789 - L1PA6 LINE L1 -993 5153 11 1215 154 8 73 chr4 82733379 82733613 -119594734 + MER20 DNA MER1_type 1 219 0 423 250 188 34 chr4 82734838 82735014 -119593333 + MIR SINE MIR 37 239 -23 249 303 56 56 chr4 82735082 82735224 -119593123 + L2 LINE L2 2935 3076 -196 517 249 150 73 chr4 82735274 82735507 -119592840 + MIR SINE MIR 1 251 -11 181 390 0 0 chr4 82735565 82735642 -119592705 + L2 LINE L2 3195 3271 -1 509 241 71 14 chr4 82736300 82736441 -119591906 + Charlie1 DNA MER1_type 1 149 -2612 * 2085 172 107 24 chr4 82736434 82736533 -119591814 + Charlie1 DNA MER1_type 2209 2298 -463 1906 166 0 10 chr4 82736533 82736841 -119591506 + AluJb SINE Alu 1 305 -7 2085 172 107 24 chr4 82736841 82737246 -119591101 + Charlie1 DNA MER1_type 2298 2755 -6 2664 103 38 24 chr4 82737338 82737547 -119590800 - THE1C LTR MaLR 0 375 157 2415 74 0 3 chr4 82737547 82737846 -119590501 + AluY SINE Alu 3 300 -11 2664 103 38 24 chr4 82737846 82738006 -119590341 - THE1C LTR MaLR -218 157 1 334 308 122 0 chr4 82741531 82741638 -119586709 + L2 LINE L2 3153 3272 0 302 247 39 0 chr4 82744097 82744174 -119584173 - MER116 DNA Mariner 0 80 1 420 294 95 18 chr4 82744931 82745325 -119583022 + LTR33 LTR ERVL 50 514 -7 742 254 24 0 chr4 82745434 82745599 -119582748 + MER63B DNA MER1_type 2 170 -266 1239 100 0 6 chr4 82745613 82745783 -119582564 - AluSp SINE Alu -11 302 134 2520 67 3 6 chr4 82745803 82746115 -119582232 - AluY SINE Alu 0 311 1 959 202 55 51 chr4 82746122 82746183 -119582164 + MER63B DNA MER1_type 181 240 -820 6631 54 9 65 chr4 82746183 82747975 -119580372 + SVA Other Other 1 1420 0 959 202 55 51 chr4 82747975 82748163 -119580184 + MER63B DNA MER1_type 240 434 0 342 308 76 40 chr4 82748672 82748870 -119579477 + MIR SINE MIR 48 252 -10 294 162 0 8 chr4 82749112 82749198 -119579149 - MER5A DNA MER1_type 0 189 46 2478 125 17 15 chr4 82749272 82749444 -119578903 - L1MC1 LINE L1 -300 6033 5862 367 268 56 73 chr4 82749444 82749731 -119578616 - L1PA5 LINE L1 -296 5858 5577 334 252 96 0 chr4 82749731 82749846 -119578501 + MIR SINE MIR 110 235 -27 644 164 39 23 chr4 82750051 82750179 -119578168 + MIR SINE MIR 49 178 -84 361 0 0 0 chr4 82750187 82750228 -119578119 + MADE1 DNA Mariner 40 80 0 240 220 0 0 chr4 82750246 82750296 -119578051 + MIR SINE MIR 203 252 -10 22 35 0 0 chr4 82751249 82751278 -119577069 + AT_rich Low_complexity Low_complexity 1 29 0 506 310 59 0 chr4 82752019 82752206 -119576141 + MIR SINE MIR 8 205 -57 260 159 0 45 chr4 82752309 82752353 -119575994 - MIR SINE MIR -59 149 108 263 235 29 0 chr4 82752415 82752483 -119575864 + Tigger5 DNA MER2_type 2251 2320 -3 339 325 9 9 chr4 82753045 82753159 -119575188 + L2 LINE L2 3197 3310 -3 26 0 0 0 chr4 82753507 82753533 -119574814 + AT_rich Low_complexity Low_complexity 1 26 0 2240 118 3 0 chr4 82753799 82754105 -119574242 + AluSx SINE Alu 1 307 -5 625 299 103 22 chr4 82754251 82754432 -119573915 + L1MC/D LINE L1 5197 5362 -1146 1667 185 0 45 chr4 82754432 82754740 -119573607 + AluJb SINE Alu 1 294 -18 625 299 103 22 chr4 82754740 82755083 -119573264 + L1MC/D LINE L1 5362 5757 -751 2357 226 55 36 chr4 82755782 82756396 -119571951 - MLT1E2 LTR MaLR 0 626 1 204 40 0 0 chr4 82756559 82756584 -119571763 + (T)n Simple_repeat Simple_repeat 1 25 0 2634 167 19 36 chr4 82756667 82757248 -119571099 + L1MB2 LINE L1 5565 6135 -36 1831 168 13 10 chr4 82757948 82758257 -119570090 - AluJb SINE Alu 0 312 3 736 210 49 19 chr4 82758608 82758770 -119569577 + MIR SINE MIR 90 256 -6 21 0 0 0 chr4 82758988 82759009 -119569338 + AT_rich Low_complexity Low_complexity 1 21 0 1632 244 99 57 chr4 82759068 82759737 -119568610 - MER21B LTR ERV1 -150 713 17 26 30 0 0 chr4 82759814 82759847 -119568500 + AT_rich Low_complexity Low_complexity 1 33 0 718 282 180 11 chr4 82761453 82761815 -119566532 - L2 LINE L2 0 3313 2891 1535 169 69 61 chr4 82762235 82762597 -119565750 + MLT1A1 LTR MaLR 1 365 0 768 330 105 27 chr4 82763347 82763868 -119564479 - L2 LINE L2 -8 3305 2670 2097 124 41 0 chr4 82763868 82764158 -119564189 - AluSx SINE Alu -10 302 1 768 330 105 27 chr4 82764158 82764477 -119563870 - L2 LINE L2 -643 2670 2377 * 938 222 5 5 chr4 82764469 82764672 -119563675 + MIR SINE MIR 8 210 -52 253 342 101 0 chr4 82764746 82764904 -119563443 - L2 LINE L2 -997 2317 2144 2113 144 53 19 chr4 82765240 82765317 -119563030 + L1PB4 LINE L1 5709 5782 -374 213 65 0 0 chr4 82765317 82765348 -119562999 + (CTATA)n Simple_repeat Simple_repeat 3 33 0 2113 144 53 19 chr4 82765348 82765687 -119562660 + L1PB4 LINE L1 5782 6139 -17 865 201 26 11 chr4 82766078 82766267 -119562080 - MLT1C LTR MaLR 0 467 276 2749 137 42 29 chr4 82766282 82766806 -119561541 - MER34B LTR ERV1 -29 536 6 1065 211 49 0 chr4 82766815 82767061 -119561286 - MLT1C LTR MaLR -209 258 1 707 208 84 0 chr4 82767795 82767949 -119560398 + MIR SINE MIR 70 236 -26 929 219 5 0 chr4 82768449 82768636 -119559711 - MER5A DNA MER1_type 0 189 2 347 270 122 14 chr4 82768701 82768849 -119559498 + MIR SINE MIR 49 212 -50 306 299 45 37 chr4 82769327 82769461 -119558886 - MER5A DNA MER1_type -23 166 32 210 335 116 43 chr4 82769484 82769648 -119558699 + MIR SINE MIR 32 207 -55 283 349 11 0 chr4 82769767 82769942 -119558405 - L1 LINE L1 -1088 5058 4882 1506 212 31 7 chr4 82770255 82770548 -119557799 - AluJo SINE Alu -12 300 1 400 356 158 15 chr4 82770913 82771388 -119556959 - L2 LINE L2 -449 2865 2323 1984 109 0 11 chr4 82771948 82772224 -119556123 + AluSx SINE Alu 1 273 -39 648 167 0 0 chr4 82772236 82772356 -119555991 + GA-rich Low_complexity Low_complexity 1 120 0 218 303 30 0 chr4 82772406 82772472 -119555875 + MIR SINE MIR 32 99 -163 351 0 0 0 chr4 82772804 82772843 -119555504 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 464 254 7 49 chr4 82773163 82773305 -119555042 + MIR3 SINE MIR 11 146 -62 756 203 17 17 chr4 82773317 82773494 -119554853 + MER20 DNA MER1_type 1 177 -42 21 0 0 0 chr4 82773543 82773564 -119554783 + AT_rich Low_complexity Low_complexity 1 21 0 1773 114 40 26 chr4 82773633 82773906 -119554441 + AluSx SINE Alu 36 312 0 786 333 85 18 chr4 82773931 82774557 -119553790 - L2 LINE L2 -1 3312 2641 276 407 51 17 chr4 82774594 82774771 -119553576 + L2 LINE L2 3009 3191 -81 1407 100 48 0 chr4 82775075 82775304 -119553043 + L1MA5A LINE L1 6054 6293 -4 1315 324 30 33 chr4 82776243 82776656 -119551691 + L2 LINE L2 2437 2850 -464 1374 179 30 109 chr4 82776656 82776728 -119551619 - MLT2C1 LTR ERVL 0 397 321 1877 169 7 10 chr4 82776728 82777030 -119551317 + AluJb SINE Alu 1 301 -11 1374 179 30 109 chr4 82777030 82777046 -119551301 - MLT2C1 LTR ERVL -76 321 305 1510 158 45 30 chr4 82777046 82777312 -119551035 + AluJo SINE Alu 42 311 -1 1374 179 30 109 chr4 82777312 82777653 -119550694 - MLT2C1 LTR ERVL -92 305 1 1315 324 30 33 chr4 82777653 82777782 -119550565 + L2 LINE L2 2850 2977 -337 303 289 27 102 chr4 82777812 82777855 -119550492 + L2 LINE L2 3118 3163 -150 1716 168 24 14 chr4 82777855 82778147 -119550200 - AluJo SINE Alu -17 295 1 303 289 27 102 chr4 82778147 82778290 -119550057 + L2 LINE L2 3163 3290 -23 977 310 39 15 chr4 82778402 82778808 -119549539 - LTR16B LTR ERVL -12 452 37 1376 270 61 0 chr4 82778917 82779325 -119549022 - MLT1J LTR MaLR -78 433 1 991 276 88 57 chr4 82780494 82781163 -119547184 - MER21B LTR ERV1 -150 713 24 465 267 221 9 chr4 82781398 82781483 -119546864 - LTR50 LTR ERVL 0 795 729 2117 110 0 14 chr4 82781483 82781774 -119546573 + AluSg SINE Alu 1 287 -23 1816 194 0 3 chr4 82781781 82782080 -119546267 + AluJb SINE Alu 1 298 -14 465 267 221 9 chr4 82782080 82782312 -119546035 - LTR50 LTR ERVL -70 725 401 460 225 90 9 chr4 82782741 82782852 -119545495 + L2 LINE L2 3191 3310 -3 186 292 14 56 chr4 82783567 82783639 -119544708 + MIR3 SINE MIR 9 77 -131 849 265 48 14 chr4 82784453 82784747 -119543600 - MLT1J LTR MaLR -8 503 200 464 286 68 34 chr4 82786348 82786554 -119541793 + MIR SINE MIR 2 214 -48 380 20 20 0 chr4 82786871 82786920 -119541427 + (CA)n Simple_repeat Simple_repeat 2 51 0 2310 100 3 0 chr4 82786969 82787269 -119541078 - AluSx SINE Alu -11 301 1 909 194 0 63 chr4 82787276 82787290 -119541057 - AluJo SINE Alu 0 312 299 502 115 0 13 chr4 82787290 82787368 -119540979 - L1MC2 LINE L1 -13 6331 6255 909 194 0 63 chr4 82787368 82787393 -119540954 - AluJo SINE Alu -13 299 274 243 0 0 0 chr4 82787393 82787420 -119540927 + (TTA)n Simple_repeat Simple_repeat 2 28 0 909 194 0 63 chr4 82787420 82787585 -119540762 - AluJo SINE Alu -38 274 120 4876 140 54 10 chr4 82787617 82788596 -119539751 - L1MC2 LINE L1 -129 6215 5196 1593 198 0 20 chr4 82788619 82788912 -119539435 + AluJo SINE Alu 1 287 -25 341 312 128 8 chr4 82788925 82789050 -119539297 - MIR3 SINE MIR -66 142 3 662 207 0 0 chr4 82791428 82791539 -119536808 + FLAM_A SINE Alu 6 116 -26 252 0 0 0 chr4 82791553 82791581 -119536766 + (CA)n Simple_repeat Simple_repeat 1 28 0 580 144 0 0 chr4 82791653 82791743 -119536604 - AluS SINE Alu 0 310 221 2245 116 0 0 chr4 82791910 82792213 -119536134 - AluSx SINE Alu -9 303 1 1303 181 4 11 chr4 82792494 82792759 -119535588 - L1MB7 LINE L1 -16 6168 5906 468 227 0 0 chr4 82792836 82792933 -119535414 - MER92A LTR ERV1 0 412 316 699 149 0 0 chr4 82792937 82793044 -119535303 + AluJo SINE Alu 1 107 -205 882 195 6 11 chr4 82793130 82793304 -119535043 + AluJo SINE Alu 115 287 -25 819 244 9 9 chr4 82793385 82793598 -119534749 - MER92A LTR ERV1 -199 213 1 31 68 0 0 chr4 82795015 82795074 -119533273 + AT_rich Low_complexity Low_complexity 1 59 0 2392 79 3 3 chr4 82795335 82795638 -119532709 + AluSg1 SINE Alu 1 303 -6 194 316 235 0 chr4 82795951 82796049 -119532298 + L2 LINE L2 3127 3247 -25 611 321 35 155 chr4 82796209 82796757 -119531590 + L2 LINE L2 2828 3309 -4 317 342 60 72 chr4 82796808 82797194 -119531153 + L2 LINE L2 2424 2804 -510 446 373 84 39 chr4 82797243 82797602 -119530745 + L2 LINE L2 2898 3272 0 216 0 0 0 chr4 82798504 82798528 -119529819 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 191 271 0 0 chr4 82799641 82799689 -119528658 - L2 LINE L2 -10 3262 3215 265 246 85 93 chr4 82799882 82800000 -119528347 - L2 LINE L2 0 3313 3197 353 240 96 32 chr4 82800203 82800328 -119528019 - L2 LINE L2 -454 2860 2728 283 298 98 73 chr4 82800384 82800546 -119527801 - L2 LINE L2 -746 2568 2395 198 0 0 0 chr4 82800546 82800568 -119527779 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 283 298 98 73 chr4 82800568 82800680 -119527667 - L2 LINE L2 -919 2395 2287 639 292 74 9 chr4 82801349 82801565 -119526782 + MIR SINE MIR 23 252 -10 2742 60 0 11 chr4 82852508 82852890 -119475457 + LTR7 LTR ERV1 71 448 -2 * 3382 144 56 10 chr4 82852890 82853499 -119474848 - MER39B LTR ERV1 -16 637 1 347 249 52 52 chr4 82853504 82853677 -119474670 - L1MC5 LINE L1 -318 7643 7471 1960 165 0 0 chr4 82853713 82853998 -119474349 + AluJb SINE Alu 2 286 -26 558 210 29 93 chr4 82854229 82854434 -119473913 + MER58A DNA MER1_type 5 196 -28 1266 128 43 4 chr4 82854434 82854861 -119473486 - LTR54 LTR ERV1 0 510 7 215 264 0 19 chr4 82855263 82855316 -119473031 + MER5A DNA MER1_type 40 91 -98 215 243 117 81 chr4 82855440 82855551 -119472796 + L2 LINE L2 3157 3271 -1 3377 197 58 50 chr4 82855702 82856390 -119471957 + L1ME3 LINE L1 5173 5899 -263 2287 97 0 23 chr4 82856390 82856679 -119471668 + AluSx SINE Alu 1 284 -28 223 62 0 0 chr4 82856679 82856711 -119471636 + (CAA)n Simple_repeat Simple_repeat 2 180 0 2287 97 0 23 chr4 82856711 82856729 -119471618 + AluSx SINE Alu 284 301 -11 3377 197 58 50 chr4 82856729 82856995 -119471352 + L1ME3 LINE L1 5899 6162 0 734 139 122 0 chr4 82857008 82857123 -119471224 + FLAM_C SINE Alu 1 129 -4 457 231 46 15 chr4 82857255 82857385 -119470962 + MIR SINE MIR 129 262 0 1913 155 0 22 chr4 82857537 82857853 -119470494 - AluJo SINE Alu -1 311 3 307 219 0 0 chr4 82857885 82857949 -119470398 + L1MC4 LINE L1 6640 6703 -1339 384 119 0 0 chr4 82857954 82858013 -119470334 + (TG)n Simple_repeat Simple_repeat 2 60 0 2382 71 0 14 chr4 82858019 82858316 -119470031 - AluY SINE Alu -18 293 1 300 57 0 0 chr4 82858495 82858530 -119469817 + U2 snRNA snRNA 1 35 -153 1576 175 3 58 chr4 82858553 82858879 -119469468 + AluJb SINE Alu 5 312 0 300 53 0 0 chr4 82859293 82859331 -119469016 + (GGA)n Simple_repeat Simple_repeat 1 38 0 769 266 41 41 chr4 82859854 82860144 -119468203 - L2 LINE L2 0 3313 3024 221 273 23 45 chr4 82861630 82861718 -119466629 - MER5A DNA MER1_type -8 181 96 * 383 141 13 51 chr4 82861645 82861723 -119466624 + MER5A DNA MER1_type 35 109 -80 386 324 101 0 chr4 82861805 82861953 -119466394 - MER5A DNA MER1_type -3 186 24 378 0 0 0 chr4 82862137 82862179 -119466168 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 369 0 0 0 chr4 82862232 82862273 -119466074 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1401 172 30 15 chr4 82862294 82862556 -119465791 - AluJb SINE Alu -46 266 1 3471 149 38 95 chr4 82862739 82863510 -119464837 + LTR8A LTR ERV1 1 727 0 6632 190 59 63 chr4 82863510 82864403 -119463944 + HUERS-P1 LTR ERV1 1 896 -5050 1991 157 3 0 chr4 82864403 82864697 -119463650 - AluSx SINE Alu -17 295 1 6632 190 59 63 chr4 82864697 82865870 -119462477 + HUERS-P1 LTR ERV1 896 2036 -3910 2067 117 24 7 chr4 82865896 82866194 -119462153 - AluSc SINE Alu -6 303 1 2350 224 80 102 chr4 82866198 82867072 -119461275 + HUERS-P1 LTR ERV1 2864 3756 -1124 2226 110 10 0 chr4 82867072 82867371 -119460976 + AluSg SINE Alu 1 302 -8 2350 224 80 102 chr4 82867371 82867593 -119460754 + HUERS-P1 LTR ERV1 3756 3981 -899 1628 186 4 4 chr4 82867593 82867867 -119460480 + AluJb SINE Alu 3 276 -36 387 0 0 0 chr4 82867869 82867912 -119460435 + (CA)n Simple_repeat Simple_repeat 1 43 0 345 24 0 0 chr4 82867913 82867955 -119460392 + (CCA)n Simple_repeat Simple_repeat 1 42 0 2350 224 80 102 chr4 82867955 82868006 -119460341 + HUERS-P1 LTR ERV1 3982 2879 -2001 1986 164 0 0 chr4 82868006 82868305 -119460042 - AluSx SINE Alu -13 299 1 2350 224 80 102 chr4 82868305 82868927 -119459420 + HUERS-P1 LTR ERV1 2878 3512 -1368 1183 177 3 107 chr4 82868927 82869226 -119459121 + AluY SINE Alu 1 268 -43 1841 225 110 67 chr4 82870683 82871221 -119457126 - MLT1F1 LTR MaLR 0 567 7 1674 154 37 4 chr4 82871922 82872195 -119456152 - Tigger3(Golem) DNA MER2_type -1 3028 2747 509 283 118 17 chr4 82872728 82872965 -119455382 + MIR SINE MIR 2 262 0 881 269 42 18 chr4 82873273 82873325 -119455022 + L2 LINE L2 1414 1463 -1851 530 230 26 18 chr4 82873325 82873438 -119454909 - MER81 DNA DNA 0 114 1 881 269 42 18 chr4 82873438 82873469 -119454878 + L2 LINE L2 1463 1492 -1822 1987 93 48 0 chr4 82873469 82873769 -119454578 - AluSq SINE Alu 0 313 1 881 269 42 18 chr4 82873769 82873966 -119454381 + L2 LINE L2 1492 1703 -1611 240 167 48 0 chr4 82873976 82874018 -119454329 + AluSx SINE Alu 1 44 -257 1450 169 58 0 chr4 82874032 82874293 -119454054 + AluSx SINE Alu 21 296 -16 637 226 17 33 chr4 82874360 82874541 -119453806 + L2 LINE L2 1696 1873 -1441 275 213 104 32 chr4 82874542 82874685 -119453662 + MLT1J1 LTR MaLR 220 444 -2 1363 258 134 50 chr4 82874688 82875401 -119452946 + L2 LINE L2 2224 3030 -283 309 262 25 36 chr4 82876070 82876157 -119452190 + MLT1E LTR MaLR 24 105 -450 1164 152 22 87 chr4 82876157 82876388 -119451959 + MER20 DNA MER1_type 1 216 -3 309 262 25 36 chr4 82876388 82876465 -119451882 + MLT1E LTR MaLR 105 181 -374 259 154 0 0 chr4 82876481 82876520 -119451827 - MLT1G LTR MaLR -346 244 206 619 213 34 4 chr4 82876731 82876871 -119451476 + MLT1G1 LTR MaLR 399 595 0 460 290 33 49 chr4 82876903 82877086 -119451261 - MIR SINE MIR -78 184 5 565 244 8 8 chr4 82877100 82877227 -119451120 - L2 LINE L2 0 3313 3187 1096 208 70 84 chr4 82877227 82877598 -119450749 - LTR8A LTR ERV1 0 727 362 676 204 0 0 chr4 82877600 82877713 -119450634 - AluJb SINE Alu -5 307 195 2175 131 8 47 chr4 82877715 82878096 -119450251 - LTR8A LTR ERV1 -361 366 1 1273 285 13 0 chr4 82878098 82878407 -119449940 - HUERS-P1 LTR ERV1 -3 6260 5948 5470 200 84 45 chr4 82878484 82878667 -119449680 - LTR49-int LTR ERV1 -105 6226 6052 1568 177 3 43 chr4 82878667 82878966 -119449381 - AluJo SINE Alu -24 288 2 5470 200 84 45 chr4 82878966 82880389 -119447958 - LTR49-int LTR ERV1 -279 6052 4597 729 65 0 0 chr4 82880490 82880582 -119447765 - LTR7 LTR ERV1 -358 92 1 2620 76 45 13 chr4 82880582 82880962 -119447385 - HERVH LTR ERV1 0 7713 7322 1424 130 19 0 chr4 82880960 82881176 -119447171 - HERVH LTR ERV1 -1894 5819 5600 * 4311 153 1 3 chr4 82881177 82881839 -119446508 - HERVH LTR ERV1 -2564 5149 4489 3221 128 2 10 chr4 82881842 82882348 -119445999 - HERVH LTR ERV1 -3720 3993 3492 * 20690 90 57 37 chr4 82882338 82885563 -119442784 - HERVH LTR ERV1 -4423 3290 1 3656 60 2 9 chr4 82885565 82886016 -119442331 - LTR7 LTR ERV1 -2 448 1 314 202 40 50 chr4 82886266 82886343 -119442004 + L1MC4 LINE L1 7918 7995 -47 3992 143 67 26 chr4 82886343 82887041 -119441306 - LTR8A LTR ERV1 0 727 1 314 202 40 50 chr4 82887041 82887062 -119441285 + L1MC4 LINE L1 7995 8015 -27 586 275 35 7 chr4 82887881 82888023 -119440324 + MIR SINE MIR 9 154 -108 374 298 56 45 chr4 82888272 82888450 -119439897 - MER5A DNA MER1_type 0 189 10 187 254 119 0 chr4 82889377 82889444 -119438903 + L2 LINE L2 3238 3312 -1 1822 168 56 21 chr4 82889807 82889948 -119438399 + MLT1A1 LTR MaLR 14 149 -216 1962 109 16 29 chr4 82889948 82890259 -119438088 - AluSx SINE Alu -5 307 1 1822 168 56 21 chr4 82890259 82890457 -119437890 + MLT1A1 LTR MaLR 149 365 0 2096 109 10 3 chr4 82890798 82891091 -119437256 + AluY SINE Alu 1 295 -16 256 250 0 0 chr4 82891094 82891146 -119437201 + MER31-int LTR ERV1 4128 4179 -757 279 0 0 0 chr4 82891147 82891178 -119437169 + (TG)n Simple_repeat Simple_repeat 2 32 0 1750 109 12 4 chr4 82891557 82891804 -119436543 + AluY SINE Alu 47 295 -16 256 250 0 0 chr4 82891807 82891859 -119436488 + MER31-int LTR ERV1 4128 4179 -757 279 0 0 0 chr4 82891860 82891891 -119436456 + (TG)n Simple_repeat Simple_repeat 2 32 0 1166 213 77 43 chr4 82891974 82892350 -119435997 + LTR37A LTR ERV1 19 407 -19 180 0 0 0 chr4 82892352 82892372 -119435975 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 1967 141 37 0 chr4 82892372 82892671 -119435676 - AluSx SINE Alu -2 310 1 21 0 0 0 chr4 82892846 82892867 -119435480 + AT_rich Low_complexity Low_complexity 1 21 0 795 133 0 0 chr4 82892868 82892973 -119435374 - FLAM_C SINE Alu -23 120 16 1201 222 93 4 chr4 82893178 82893457 -119434890 + AluJo SINE Alu 1 304 -8 744 227 76 114 chr4 82893548 82893945 -119434402 - MER34 LTR ERV1 -183 382 1 186 189 0 0 chr4 82894089 82894126 -119434221 + CT-rich Low_complexity Low_complexity 1 37 0 2220 112 0 0 chr4 82894127 82894422 -119433925 - AluSg SINE Alu -15 295 1 1476 195 33 23 chr4 82894422 82894729 -119433618 - AluJb SINE Alu -2 310 1 1703 192 0 7 chr4 82894954 82895267 -119433080 - AluJb SINE Alu 0 311 1 887 293 56 31 chr4 82895291 82895878 -119432469 - L1M4 LINE L1 -1088 5058 4457 1556 136 0 0 chr4 82895981 82896230 -119432117 + AluSx SINE Alu 64 312 0 1883 203 112 15 chr4 82896431 82896462 -119431885 - Charlie5 DNA MER1_type 0 2624 2597 2107 130 0 3 chr4 82896462 82896763 -119431584 + AluSx SINE Alu 1 300 -12 1883 203 112 15 chr4 82896763 82897277 -119431070 - Charlie5 DNA MER1_type -27 2597 2026 287 259 93 19 chr4 82897431 82897539 -119430808 + LTR16C LTR ERVL 340 455 -36 257 194 16 0 chr4 82897899 82897961 -119430386 + L1MC4 LINE L1 7918 7980 -62 808 165 8 0 chr4 82897966 82898087 -119430260 + AluJo/FLAM SINE Alu 2 123 -179 2129 93 6 65 chr4 82898087 82898408 -119429939 - AluSc SINE Alu -7 302 1 1946 161 45 21 chr4 82898430 82898766 -119429581 + MER2 DNA MER2_type 1 344 0 277 175 63 0 chr4 82898766 82898829 -119429518 + L1MC4 LINE L1 7976 8042 0 2051 137 3 0 chr4 82898940 82899233 -119429114 + AluSq SINE Alu 1 294 -19 247 257 0 14 chr4 82899874 82899948 -119428399 + L1MC/D LINE L1 5688 5760 -2048 917 131 0 0 chr4 82900027 82900149 -119428198 - FLAM_C SINE Alu -11 122 1 702 322 42 0 chr4 82901374 82901610 -119426737 - L3 LINE CR1 -291 1286 1041 2005 168 35 17 chr4 82901707 82902053 -119426294 - MLT1A1 LTR MaLR 0 365 14 302 157 28 37 chr4 82902196 82902304 -119426043 + (TTA)n Simple_repeat Simple_repeat 3 109 0 505 223 8 18 chr4 82902663 82902679 -119425668 + MER5B DNA MER1_type 1 11 -178 386 297 76 7 chr4 82902679 82902824 -119425523 - MER5B DNA MER1_type 0 178 24 912 143 8 15 chr4 82902978 82903111 -119425236 - FLAM_C SINE Alu -1 132 1 874 218 11 11 chr4 82903474 82903648 -119424699 + FAM SINE Alu 1 174 -1 197 33 33 0 chr4 82904203 82904233 -119424114 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1597 181 3 54 chr4 82904264 82904578 -119423769 - AluJo SINE Alu -14 298 1 458 287 82 0 chr4 82904612 82904734 -119423613 + AluJo SINE Alu 2 133 -169 708 138 6 38 chr4 82904737 82904897 -119423450 + (GGGAA)n Simple_repeat Simple_repeat 5 159 0 715 171 102 83 chr4 82904924 82905129 -119423218 + MLT1L LTR MaLR 400 608 -7 1990 130 3 19 chr4 82905842 82906150 -119422197 - AluJb SINE Alu -9 303 1 234 0 0 0 chr4 82906154 82906180 -119422167 + (TTG)n Simple_repeat Simple_repeat 2 27 0 607 237 37 15 chr4 82906300 82906435 -119421912 + AluJo SINE Alu 116 253 -59 449 249 173 52 chr4 82906851 82907024 -119421323 + L2 LINE L2 3119 3312 -1 2089 104 56 0 chr4 82907214 82907501 -119420846 - AluSx SINE Alu -9 303 1 21 0 0 0 chr4 82907511 82907532 -119420815 + AT_rich Low_complexity Low_complexity 1 21 0 450 0 0 0 chr4 82907839 82907889 -119420458 + (TG)n Simple_repeat Simple_repeat 2 51 0 29 47 0 0 chr4 82908351 82908394 -119419953 + AT_rich Low_complexity Low_complexity 1 43 0 2329 92 0 0 chr4 82909590 82909884 -119418463 - AluSg SINE Alu -16 294 1 295 261 152 7 chr4 82910196 82910334 -119418013 - L1ME4a LINE L1 -7 6114 5957 519 299 62 22 chr4 82910440 82910714 -119417633 - L1ME4a LINE L1 -355 5766 5482 1942 183 8 11 chr4 82910948 82911315 -119417032 + MER47A DNA MER2_type 1 366 0 1041 263 0 5 chr4 82911646 82911870 -119416477 - MER58A DNA MER1_type -1 223 1 1810 139 19 32 chr4 82911904 82912214 -119416133 + AluJo SINE Alu 1 306 -6 1532 181 0 60 chr4 82912545 82912859 -119415488 + AluJb SINE Alu 17 311 -1 1451 244 172 6 chr4 82913429 82913905 -119414442 + MLT1H1 LTR MaLR 1 555 0 252 311 39 0 chr4 82914822 82914925 -119413422 + MER103 DNA DNA 12 118 -48 401 300 84 48 chr4 82915037 82915264 -119413083 + MIR SINE MIR 20 254 -8 232 304 76 22 chr4 82915606 82915698 -119412649 + MIR SINE MIR 93 189 -73 319 316 32 52 chr4 82915777 82915932 -119412415 - MIR3 SINE MIR -3 205 54 621 258 94 9 chr4 82917053 82917266 -119411081 - MIR SINE MIR 0 262 32 2303 101 0 0 chr4 82917589 82917897 -119410450 + AluSc SINE Alu 1 308 -1 29 60 0 0 chr4 82918429 82918479 -119409868 + AT_rich Low_complexity Low_complexity 1 50 0 466 273 27 27 chr4 82918624 82918774 -119409573 - MIR SINE MIR -58 204 55 206 373 0 0 chr4 82921045 82921104 -119407243 + L2 LINE L2 3206 3264 -8 682 229 118 16 chr4 82921930 82922175 -119406172 + L2 LINE L2 3044 3313 0 440 45 15 0 chr4 82922559 82922625 -119405722 - L1MD2 LINE L1 -4 6355 6289 768 177 4 6 chr4 82922625 82922889 -119405458 + AluJo SINE Alu 2 312 0 4068 183 72 11 chr4 82922897 82923820 -119404527 - L1MD1 LINE L1 -53 6583 5607 4068 221 124 71 chr4 82923811 82925144 -119403203 - L1MD1 LINE L1 -5125 1415 13 679 187 22 113 chr4 82925221 82925292 -119403055 - MER3 DNA MER1_type 0 209 133 8466 30 0 1 chr4 82925292 82927075 -119401272 + L1PA4 LINE L1 4374 6155 0 679 187 22 113 chr4 82927075 82927233 -119401114 - MER3 DNA MER1_type -76 133 1 847 191 0 25 chr4 82927305 82927488 -119400859 + AluJo SINE Alu 138 316 0 446 268 108 24 chr4 82928279 82928492 -119399855 - L2 LINE L2 0 3313 3083 24 0 0 0 chr4 82929897 82929921 -119398426 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr4 82930223 82930250 -119398097 + (TG)n Simple_repeat Simple_repeat 2 28 0 1875 157 3 10 chr4 82930736 82931036 -119397311 + AluJo SINE Alu 1 298 -14 574 170 0 20 chr4 82931415 82931515 -119396832 - Tigger7 DNA MER2_type -1 2586 2489 * 1405 199 43 0 chr4 82931513 82931769 -119396578 - Tigger7 DNA MER2_type -2220 267 1 28 0 0 0 chr4 82933365 82933393 -119394954 + AT_rich Low_complexity Low_complexity 1 28 0 302 321 47 89 chr4 82933587 82933651 -119394696 - L2 LINE L2 -2 3270 3205 2177 100 4 0 chr4 82933651 82933962 -119394385 - AluSx SINE Alu 0 312 1 302 321 47 89 chr4 82933962 82934085 -119394262 - L2 LINE L2 -67 3205 3089 348 261 81 0 chr4 82934319 82934430 -119393917 + MIR SINE MIR 133 252 -10 183 323 63 63 chr4 82935013 82935140 -119393207 + L2 LINE L2 3179 3305 -8 30 0 0 0 chr4 82935514 82935544 -119392803 + AT_rich Low_complexity Low_complexity 1 30 0 734 318 46 4 chr4 82935714 82935953 -119392394 + MIR SINE MIR 14 262 0 2351 105 3 0 chr4 82936046 82936352 -119391995 + AluSc SINE Alu 1 307 -2 715 203 0 0 chr4 82936930 82937053 -119391294 - FLAM_C SINE Alu -20 123 1 481 242 57 38 chr4 82937760 82937917 -119390430 + MER21B LTR ERV1 331 490 -373 195 114 0 0 chr4 82938118 82938153 -119390194 + (A)n Simple_repeat Simple_repeat 1 35 0 1542 142 20 12 chr4 82938324 82938571 -119389776 - AluJb SINE Alu -63 249 1 213 119 0 0 chr4 82938742 82938784 -119389563 + (CA)n Simple_repeat Simple_repeat 1 42 0 2400 149 135 0 chr4 82939423 82939860 -119388487 + Tigger7 DNA MER2_type 2 497 -236 1030 157 38 5 chr4 82939855 82940040 -119388307 + Tigger7 DNA MER2_type 2295 2485 -6 * 1081 155 17 11 chr4 82940054 82940235 -119388112 - AluJb SINE Alu -15 297 116 1627 158 0 29 chr4 82940525 82940804 -119387543 - AluJb SINE Alu -30 282 12 1226 149 0 63 chr4 82940839 82941060 -119387287 - AluJo SINE Alu -50 262 56 406 236 63 63 chr4 82941638 82941812 -119386535 + Charlie8 DNA MER1_type 103 276 -2141 198 0 0 0 chr4 82941902 82941924 -119386423 + (T)n Simple_repeat Simple_repeat 1 22 0 208 290 170 10 chr4 82942029 82942129 -119386218 + MIR3 SINE MIR 5 120 -88 308 289 202 51 chr4 82942615 82943026 -119385321 + L1M2 LINE L1 470 942 -5907 265 200 13 13 chr4 82943287 82943362 -119384985 + (CGG)n Simple_repeat Simple_repeat 2 76 0 2701 191 102 3 chr4 82945815 82946382 -119381965 + MER82 DNA MER2_type 24 646 -7 385 280 138 55 chr4 82947388 82947663 -119380684 - L2 LINE L2 -20 3293 2996 510 327 47 28 chr4 82947801 82948015 -119380332 - L2 LINE L2 -459 2855 2638 323 264 83 37 chr4 82948151 82948367 -119379980 - L2 LINE L2 -933 2381 2156 411 274 178 0 chr4 82948393 82948550 -119379797 - MER5A DNA MER1_type 0 189 5 392 213 90 16 chr4 82948566 82948688 -119379659 - L2 LINE L2 -1222 2092 1962 1973 133 0 0 chr4 82950237 82950550 -119377797 + AluSx SINE Alu 5 317 0 246 301 203 8 chr4 82951499 82951622 -119376725 + MIR3 SINE MIR 57 203 -5 216 0 0 0 chr4 82951811 82951835 -119376512 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2028 117 0 7 chr4 82951839 82952122 -119376225 - AluSx SINE Alu -31 281 1 1678 169 45 13 chr4 82952802 82953115 -119375232 + MLT1A1 LTR MaLR 1 323 -42 423 0 0 0 chr4 82953116 82953163 -119375184 + (TG)n Simple_repeat Simple_repeat 2 48 0 773 179 36 0 chr4 82953163 82953303 -119375044 - FRAM SINE Alu -27 149 5 756 178 0 0 chr4 82953646 82953764 -119374583 - FLAM_C SINE Alu -15 118 1 180 0 0 0 chr4 82955606 82955626 -119372721 + (T)n Simple_repeat Simple_repeat 1 20 0 226 296 139 9 chr4 82955888 82956003 -119372344 - MIR3 SINE MIR -40 168 39 500 319 119 17 chr4 82956969 82957329 -119371018 + L1M4 LINE L1 4195 4591 -1555 409 242 38 0 chr4 82957475 82957567 -119370780 + FRAM SINE Alu 73 146 -20 229 86 0 0 chr4 82957567 82957602 -119370745 + (TAA)n Simple_repeat Simple_repeat 2 180 0 733 152 7 51 chr4 82957933 82958071 -119370276 + Charlie1a DNA MER1_type 5 136 -1319 186 43 0 0 chr4 82958135 82958158 -119370189 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 3535 154 45 73 chr4 82958160 82958986 -119369361 - L1MB4 LINE L1 -12 6168 5366 3777 179 116 19 chr4 82958986 82959840 -119368507 + Charlie1a DNA MER1_type 325 1297 -1464 2614 42 3 7 chr4 82959840 82960147 -119368200 + AluY SINE Alu 1 306 -5 3777 179 116 19 chr4 82960147 82960323 -119368024 + Charlie1a DNA MER1_type 1297 1455 0 1402 169 32 19 chr4 82960351 82960664 -119367683 + MER33 DNA MER1_type 8 324 0 1620 180 46 0 chr4 82961285 82961568 -119366779 - AluJb SINE Alu -11 301 6 7585 20 6 2 chr4 82962145 82963256 -119365091 + L1PA3 LINE L1 5038 6151 -4 315 282 208 13 chr4 82963841 82963990 -119364357 - MER5A DNA MER1_type 0 189 12 244 342 54 18 chr4 82964131 82964242 -119364105 - MER5A DNA MER1_type -32 157 43 318 266 28 21 chr4 82964250 82964393 -119363954 - L1M4 LINE L1 -1536 4610 4467 1382 195 41 27 chr4 82964534 82964826 -119363521 - AluJo SINE Alu -15 297 2 351 0 0 0 chr4 82968055 82968094 -119360253 + (TG)n Simple_repeat Simple_repeat 2 40 0 187 279 16 16 chr4 82968221 82968282 -119360065 + L2 LINE L2 2613 2673 -641 431 236 38 0 chr4 82968740 82968885 -119359462 - L1MEc LINE L1 -865 1711 1543 312 342 87 35 chr4 82969214 82969524 -119358823 - L1M4 LINE L1 -1052 5094 4769 2201 125 0 0 chr4 82969548 82969860 -119358487 - AluSx SINE Alu 0 312 1 27 0 0 0 chr4 82969926 82969953 -119358394 + AT_rich Low_complexity Low_complexity 1 27 0 1633 152 61 18 chr4 82970112 82970389 -119357958 - AluSx SINE Alu -23 289 1 6138 174 67 82 chr4 82970671 82972400 -119355947 - L1MB7 LINE L1 -17 6665 4911 2105 123 0 7 chr4 82972400 82972700 -119355647 + AluSg SINE Alu 1 298 -12 6138 174 67 82 chr4 82972700 82972734 -119355613 - L1MB7 LINE L1 -1771 4911 4878 297 136 0 0 chr4 82972734 82972778 -119355569 - MER4D LTR ERV1 -69 803 760 6138 174 67 82 chr4 82972778 82972910 -119355437 - L1MB7 LINE L1 -1804 4878 4746 1384 202 69 18 chr4 82972910 82973187 -119355160 - AluJo SINE Alu -19 293 3 6138 174 67 82 chr4 82973187 82973547 -119354800 - L1MB7 LINE L1 -1936 4746 4382 2124 108 3 25 chr4 82973547 82973863 -119354484 - AluSq SINE Alu -4 309 1 6138 174 67 82 chr4 82973863 82974488 -119353859 - L1MB7 LINE L1 -2300 4382 3795 482 209 158 51 chr4 82974491 82974764 -119353583 - L1MB7 LINE L1 -2766 3878 3577 1172 101 0 0 chr4 82974765 82974923 -119353424 - AluY SINE Alu -11 300 143 2983 209 28 26 chr4 82974923 82974977 -119353370 - L1MB7 LINE L1 -3059 3585 3533 2300 97 0 3 chr4 82974977 82975277 -119353070 - AluY SINE Alu -12 299 1 2983 209 28 26 chr4 82975277 82976074 -119352273 - L1MB7 LINE L1 -3111 3533 2732 1709 199 0 7 chr4 82976082 82976389 -119351958 - AluJb SINE Alu -5 307 3 5152 205 58 33 chr4 82976396 82977662 -119350685 - L1MB7 LINE L1 -5229 1313 16 212 197 92 79 chr4 82977937 82978013 -119350334 - MIR3 SINE MIR -23 185 109 21 71 0 0 chr4 82978091 82978133 -119350214 + AT_rich Low_complexity Low_complexity 1 42 0 2066 125 20 7 chr4 82978683 82978980 -119349367 - AluSx SINE Alu -11 301 1 519 308 6 0 chr4 82979077 82979236 -119349111 + L2 LINE L2 2226 2385 -929 256 132 0 0 chr4 82979243 82979281 -119349066 - LTR40b LTR ERVL 0 462 425 520 215 59 7 chr4 82979283 82979420 -119348927 + LTR40b LTR ERVL 163 341 -178 1881 141 3 39 chr4 82979466 82979772 -119348575 + AluJb SINE Alu 5 299 -13 1728 274 77 35 chr4 82979812 82980702 -119347645 + L2 LINE L2 2392 3313 0 2858 80 5 3 chr4 82981094 82981468 -119346879 + THE1C LTR MaLR 1 375 0 272 321 73 32 chr4 82981887 82982105 -119346242 + MIR SINE MIR 30 256 -6 297 254 42 8 chr4 82982307 82982425 -119345922 - L1MC4 LINE L1 -1 8041 7920 497 263 214 10 chr4 82982786 82983137 -119345210 - L1MC5 LINE L1 -401 7407 7109 248 320 70 23 chr4 82983352 82983480 -119344867 + L3 LINE CR1 335 468 -1109 1896 249 64 70 chr4 82983907 82984654 -119343693 - MER21B LTR ERV1 -108 755 13 732 52 42 0 chr4 82984847 82984943 -119343404 - L1PA8 LINE L1 -7 6165 6066 2095 47 0 0 chr4 82984969 82985224 -119343123 - L1PA8 LINE L1 -492 5662 5408 1407 160 0 4 chr4 82985504 82985729 -119342618 - AluSx SINE Alu -6 306 83 241 182 15 61 chr4 82985744 82985810 -119342537 + L2 LINE L2 3251 3313 0 305 185 0 0 chr4 82985940 82985994 -119342353 - AluSx SINE Alu -230 73 20 453 164 0 0 chr4 82985994 82986067 -119342280 - AluSx SINE Alu -239 73 1 271 303 50 0 chr4 82986141 82986240 -119342107 - MIR SINE MIR -42 220 117 463 301 84 0 chr4 82986241 82986407 -119341940 - MIR SINE MIR -60 202 23 245 218 18 18 chr4 82986476 82986531 -119341816 - L2 LINE L2 0 3313 3259 1458 258 84 58 chr4 82987016 82987290 -119341057 - HAL1 LINE L1 -1034 1473 1208 2347 96 0 0 chr4 82987290 82987583 -119340764 - AluSq SINE Alu -20 293 1 1458 258 84 58 chr4 82987583 82988226 -119340121 - HAL1 LINE L1 -1299 1208 532 204 172 0 0 chr4 82990190 82990248 -119338099 + (TA)n Simple_repeat Simple_repeat 2 59 0 329 232 62 36 chr4 82990248 82990360 -119337987 + L1MC4 LINE L1 6604 6718 -1324 306 297 0 22 chr4 82990293 82990384 -119337963 - L1MC4 LINE L1 -1340 6702 6614 * 219 270 35 104 chr4 82990385 82990500 -119337847 + MER5A DNA MER1_type 77 183 -6 2217 147 28 0 chr4 82990983 82991337 -119337010 - THE1B LTR MaLR 0 364 1 252 243 86 100 chr4 82991593 82991634 -119336713 - MLT1L LTR MaLR -4 611 571 2146 105 6 22 chr4 82991634 82991947 -119336400 + AluSq SINE Alu 1 308 -5 252 243 86 100 chr4 82991947 82992045 -119336302 - MLT1L LTR MaLR -44 571 474 601 307 66 8 chr4 82992184 82992441 -119335906 - MLT1L LTR MaLR -341 274 3 1953 130 16 29 chr4 82992909 82993217 -119335130 - AluSq SINE Alu -9 304 1 614 172 20 113 chr4 82993320 82993471 -119334876 + MER2 DNA MER2_type 2 138 -207 747 147 26 0 chr4 82993656 82993772 -119334575 - Tigger1 DNA MER2_type -1 2417 2299 3129 168 37 18 chr4 82993773 82994475 -119333872 - MER21-int LTR ERV1 -931 3260 2473 261 0 0 0 chr4 82994475 82994504 -119333843 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3129 168 37 18 chr4 82994504 82994776 -119333571 - MER21-int LTR ERV1 -1718 2473 2208 631 155 17 9 chr4 82994778 82994894 -119333453 + MLT2A1 LTR ERVL 122 238 -206 * 1555 191 50 10 chr4 82994871 82995170 -119333177 - MER21A LTR ERV1 -245 686 376 1557 107 86 0 chr4 82995175 82995418 -119332929 - MER21A LTR ERV1 -667 264 1 11055 143 28 18 chr4 82995418 82995643 -119332704 - Tigger1 DNA MER2_type -118 2300 2079 1080 58 7 0 chr4 82995643 82995781 -119332566 + MER85 DNA T2_type 1 139 0 11055 143 28 18 chr4 82995781 82996468 -119331879 - Tigger1 DNA MER2_type -339 2079 1400 773 94 0 8 chr4 82996468 82996585 -119331762 + (TTCTC)n Simple_repeat Simple_repeat 4 119 0 1477 149 0 90 chr4 82996590 82996891 -119331456 - AluSx SINE Alu -38 274 1 11055 143 28 18 chr4 82996891 82998177 -119330170 - Tigger1 DNA MER2_type -1021 1397 21 226 268 28 0 chr4 82998558 82998629 -119329718 + CT-rich Low_complexity Low_complexity 1 73 0 1026 189 132 63 chr4 82998731 82999065 -119329282 - L1M4 LINE L1 -356 5818 5462 727 263 107 6 chr4 82999556 82999921 -119328426 - Charlie7 DNA MER1_type -1931 681 280 254 99 99 14 chr4 82999936 83000007 -119328340 - Charlie7 DNA MER1_type -2470 142 66 2468 61 0 0 chr4 83000977 83001271 -119327076 - AluY SINE Alu -14 297 4 416 256 69 12 chr4 83002009 83002057 -119326290 - HAL1 LINE L1 -4 2503 2459 2403 69 3 13 chr4 83002057 83002363 -119325984 + AluY SINE Alu 1 303 -8 416 256 69 12 chr4 83002363 83002474 -119325873 - HAL1 LINE L1 -48 2459 2335 308 277 36 71 chr4 83002733 83002849 -119325498 - HAL1 LINE L1 -428 2079 1973 2283 99 0 0 chr4 83002849 83003152 -119325195 + AluY SINE Alu 1 303 -8 308 277 36 71 chr4 83003152 83003259 -119325088 - HAL1 LINE L1 -534 1973 1864 994 275 68 12 chr4 83003271 83003685 -119324662 - HAL1 LINE L1 -698 1809 1373 363 216 108 72 chr4 83003705 83003906 -119324441 - HAL1 LINE L1 -1230 1277 1064 1827 166 3 20 chr4 83003906 83004208 -119324139 - AluSx SINE Alu -15 297 1 363 216 108 72 chr4 83004208 83004256 -119324091 - HAL1 LINE L1 -1443 1064 1019 1261 196 93 29 chr4 83004375 83004655 -119323692 - AluJo SINE Alu -14 298 1 1953 131 47 47 chr4 83004688 83005048 -119323299 - THE1B LTR MaLR 0 364 5 22 35 0 0 chr4 83005693 83005722 -119322625 + AT_rich Low_complexity Low_complexity 1 29 0 824 285 30 71 chr4 83005764 83006262 -119322085 - MLT1H LTR MaLR 0 549 1 3240 88 16 13 chr4 83006283 83006735 -119321612 - MLT2A2 LTR ERVL 0 453 1 203 103 26 0 chr4 83006977 83007016 -119321331 + T-rich Low_complexity Low_complexity 2 41 0 2101 36 12 0 chr4 83007018 83007269 -119321078 - LTR17 LTR ERV1 -454 326 73 407 360 147 18 chr4 83008435 83008815 -119319532 + L2 LINE L2 2876 3304 -9 245 250 73 10 chr4 83008862 83008958 -119319389 - HsTC2 DNA Tc2 -1795 103 2 624 275 136 36 chr4 83009901 83010232 -119318115 + L2 LINE L2 2950 3313 0 854 213 25 30 chr4 83010828 83011030 -119317317 - MIR SINE MIR -13 249 49 21 0 0 0 chr4 83011054 83011075 -119317272 + AT_rich Low_complexity Low_complexity 1 21 0 244 237 26 26 chr4 83011434 83011510 -119316837 + (TATATG)n Simple_repeat Simple_repeat 1 76 0 22 0 0 0 chr4 83012743 83012765 -119315582 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 83013846 83013870 -119314477 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr4 83014967 83014999 -119313348 + AT_rich Low_complexity Low_complexity 1 32 0 31 26 0 0 chr4 83015791 83015829 -119312518 + AT_rich Low_complexity Low_complexity 1 38 0 30 27 0 0 chr4 83017483 83017520 -119310827 + AT_rich Low_complexity Low_complexity 1 37 0 1531 194 19 26 chr4 83019310 83019619 -119308728 - AluJo SINE Alu -5 307 1 579 292 94 0 chr4 83020341 83020533 -119307814 + MIR SINE MIR 3 212 -50 21 0 0 0 chr4 83020879 83020900 -119307447 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4 83020975 83020995 -119307352 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2012 134 3 0 chr4 83020997 83021288 -119307059 - AluSx SINE Alu -20 292 1 455 202 131 0 chr4 83021299 83021398 -119306949 - FLAM_A SINE Alu -29 113 2 433 233 7 82 chr4 83021503 83021649 -119306698 - L1MC5 LINE L1 -63 7898 7764 920 182 12 18 chr4 83022895 83023065 -119305282 - FRAM SINE Alu -8 168 1 494 242 65 87 chr4 83023741 83023972 -119304375 + MER112 DNA MER1_type 1 226 -34 23 33 0 0 chr4 83024714 83024744 -119303603 + AT_rich Low_complexity Low_complexity 1 30 0 402 266 147 0 chr4 83026569 83026678 -119301669 + MER119 DNA MER1_type 4 128 -455 * 564 219 20 27 chr4 83026668 83026814 -119301533 + MER119 DNA MER1_type 439 583 0 1332 143 42 0 chr4 83026836 83027052 -119301295 + L1PB4 LINE L1 5924 6148 -8 257 333 286 0 chr4 83027064 83027253 -119301094 + MIR SINE MIR 20 262 0 210 71 0 0 chr4 83027481 83027509 -119300838 + (T)n Simple_repeat Simple_repeat 1 28 0 261 208 208 57 chr4 83027597 83027703 -119300644 - L2 LINE L2 -3 3310 3189 21 0 0 0 chr4 83028665 83028686 -119299661 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 83029684 83029714 -119298633 + AT_rich Low_complexity Low_complexity 1 30 0 231 324 110 7 chr4 83030252 83030397 -119297950 - L2 LINE L2 -554 2760 2601 206 194 16 0 chr4 83031095 83031157 -119297190 + (TA)n Simple_repeat Simple_repeat 2 64 0 21 71 0 0 chr4 83031559 83031601 -119296746 + AT_rich Low_complexity Low_complexity 1 42 0 309 263 152 10 chr4 83033208 83033307 -119295040 + MIR SINE MIR 148 260 -2 1692 106 4 0 chr4 83033355 83033591 -119294756 - AluSq SINE Alu -2 311 75 1095 149 201 80 chr4 83033593 83033646 -119294701 - MER90 LTR ERV1 -184 391 346 1305 153 165 11 chr4 83033646 83033907 -119294440 + AluJo SINE Alu 2 302 0 1095 149 201 80 chr4 83033907 83034202 -119294145 - MER90 LTR ERV1 -229 346 1 2100 122 0 3 chr4 83034492 83034780 -119293567 + AluSx SINE Alu 1 287 -25 2391 80 47 3 chr4 83034825 83035164 -119293183 - THE1A LTR MaLR -1 354 1 6160 97 2 1 chr4 83035164 83035998 -119292349 - THE1A-int LTR MaLR 0 1580 746 1739 145 22 13 chr4 83036067 83036385 -119291962 + L1MA5A LINE L1 5977 6297 0 404 223 65 22 chr4 83036433 83036572 -119291775 + L1ME4a LINE L1 5973 6117 -4 663 48 0 0 chr4 83037644 83037727 -119290620 + (CAG)n Simple_repeat Simple_repeat 1 83 0 207 0 0 0 chr4 83037727 83037750 -119290597 + (CCA)n Simple_repeat Simple_repeat 2 24 0 21 36 0 0 chr4 83038407 83038435 -119289912 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr4 83039019 83039045 -119289302 + (T)n Simple_repeat Simple_repeat 1 26 0 184 307 27 40 chr4 83039586 83039661 -119288686 - L3 LINE CR1 -196 1381 1308 465 103 0 0 chr4 83040374 83040442 -119287905 + (TG)n Simple_repeat Simple_repeat 1 68 0 230 114 0 0 chr4 83040613 83040648 -119287699 + Alu SINE Alu 1 35 -266 807 201 0 0 chr4 83040751 83040885 -119287462 - Tigger3(Golem) DNA MER2_type -2894 135 2 790 191 107 0 chr4 83041277 83041445 -119286902 - MIR SINE MIR 0 262 77 25 0 0 0 chr4 83041603 83041628 -119286719 + AT_rich Low_complexity Low_complexity 1 25 0 198 167 0 0 chr4 83042561 83042597 -119285750 + (TG)n Simple_repeat Simple_repeat 1 36 0 2447 77 3 0 chr4 83042995 83043305 -119285042 - AluSp SINE Alu -2 311 1 23 33 0 0 chr4 83043443 83043473 -119284874 + AT_rich Low_complexity Low_complexity 1 30 0 479 287 33 13 chr4 83043951 83044101 -119284246 + MIR SINE MIR 39 191 -71 26 0 0 0 chr4 83044207 83044233 -119284114 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr4 83045451 83045481 -119282866 + AT_rich Low_complexity Low_complexity 1 30 0 1289 187 88 22 chr4 83046714 83046987 -119281360 + AluJb SINE Alu 1 291 -21 1604 171 65 0 chr4 83046997 83047289 -119281058 + AluJb SINE Alu 1 311 -1 195 276 43 112 chr4 83047297 83047413 -119280934 + MER5A DNA MER1_type 60 167 -22 369 312 175 7 chr4 83048279 83048433 -119279914 + MER5A DNA MER1_type 10 189 0 474 257 87 100 chr4 83048791 83049091 -119279256 - AluJo SINE Alu -3 299 4 684 274 119 40 chr4 83049160 83049539 -119278808 + L2 LINE L2 2905 3313 0 243 242 0 0 chr4 83049545 83049607 -119278740 + (TG)n Simple_repeat Simple_repeat 1 62 0 185 125 75 0 chr4 83050061 83050101 -119278246 + (CATTT)n Simple_repeat Simple_repeat 3 45 0 2511 66 0 0 chr4 83051873 83052176 -119276171 + AluY SINE Alu 1 303 -8 1014 203 114 189 chr4 83053052 83053846 -119274501 - HAL1 LINE L1 -7 2500 1721 836 129 0 50 chr4 83053846 83053985 -119274362 + FLAM_C SINE Alu 1 132 -11 1014 203 114 189 chr4 83053985 83054552 -119273795 - HAL1 LINE L1 -786 1721 1113 227 278 19 0 chr4 83054706 83054760 -119273587 - L2 LINE L2 -229 3043 2989 1350 281 129 13 chr4 83054864 83055552 -119272795 - L1M4 LINE L1 -2309 3837 3070 14640 134 28 8 chr4 83055565 83056510 -119271837 - Tigger1 DNA MER2_type 0 2418 1493 1362 206 11 14 chr4 83056510 83056796 -119271551 - AluJo SINE Alu -16 286 2 14640 134 28 8 chr4 83056796 83058222 -119270125 - Tigger1 DNA MER2_type -925 1493 1 307 219 79 18 chr4 83058242 83058356 -119269991 - L1M4 LINE L1 -3114 3032 2912 1604 201 10 0 chr4 83058694 83058987 -119269360 - AluJo SINE Alu -11 301 6 514 271 78 31 chr4 83059309 83059501 -119268846 + MIR SINE MIR 34 234 -28 257 272 171 45 chr4 83060041 83060287 -119268060 + L1ME LINE L1 5505 5781 -340 21 57 0 0 chr4 83060369 83060404 -119267943 + AT_rich Low_complexity Low_complexity 1 35 0 257 386 86 12 chr4 83060929 83061092 -119267255 - L2 LINE L2 -208 3064 2890 1490 101 0 10 chr4 83061473 83061672 -119266675 + 7SLRNA srpRNA srpRNA 107 303 -17 380 307 188 46 chr4 83061779 83062501 -119265846 - L2 LINE L2 -830 2484 1641 1932 148 103 65 chr4 83062501 83062919 -119265428 + Tigger2a DNA MER2_type 1 434 0 380 307 188 46 chr4 83062919 83062977 -119265370 - L2 LINE L2 -1673 1641 1593 321 240 88 104 chr4 83063450 83063561 -119264786 + MIR SINE MIR 7 115 -147 1639 160 3 64 chr4 83063561 83063874 -119264473 - AluJo SINE Alu -18 294 1 321 240 88 104 chr4 83063874 83063954 -119264393 + MIR SINE MIR 115 195 -67 294 267 22 33 chr4 83064661 83064751 -119263596 - MIR SINE MIR -119 143 55 21 36 0 0 chr4 83064798 83064826 -119263521 + AT_rich Low_complexity Low_complexity 1 28 0 334 194 0 0 chr4 83066043 83066105 -119262242 - MIR SINE MIR -84 178 117 23 0 0 0 chr4 83066201 83066224 -119262123 + AT_rich Low_complexity Low_complexity 1 23 0 193 281 105 0 chr4 83066493 83066550 -119261797 + MIR3 SINE MIR 117 179 -29 661 251 65 45 chr4 83066930 83067177 -119261170 + MARNA DNA Mariner 118 369 -217 22 0 0 0 chr4 83068323 83068345 -119260002 + AT_rich Low_complexity Low_complexity 1 22 0 284 224 265 20 chr4 83069312 83069410 -119258937 - MIR SINE MIR -20 242 121 990 336 128 33 chr4 83070728 83071286 -119257061 + L2 LINE L2 1856 2360 -912 797 109 31 0 chr4 83071286 83071414 -119256933 - L1MA3 LINE L1 -11 6294 6163 990 336 128 33 chr4 83071414 83071569 -119256778 + L2 LINE L2 2360 2499 -773 1955 93 86 0 chr4 83071569 83071849 -119256498 - AluSg SINE Alu -6 304 1 990 336 128 33 chr4 83071849 83072377 -119255970 + L2 LINE L2 2499 3227 -45 462 162 111 0 chr4 83075164 83075281 -119253066 + L1MA8 LINE L1 6160 6289 -2 285 137 42 126 chr4 83077076 83077171 -119251176 + MIR SINE MIR 175 261 -1 180 0 0 0 chr4 83077233 83077253 -119251094 + (TA)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr4 83078315 83078343 -119250004 + AT_rich Low_complexity Low_complexity 1 28 0 216 280 220 10 chr4 83078954 83079054 -119249293 - L2 LINE L2 -1 3271 3151 525 192 168 0 chr4 83083995 83084120 -119244227 - Charlie4 DNA MER1_type -4 1957 1812 612 317 27 0 chr4 83085235 83085421 -119242926 - MIR SINE MIR -57 205 15 971 34 0 0 chr4 83085845 83085964 -119242383 - L1PA5 LINE L1 0 6154 6036 225 309 55 0 chr4 83086083 83086138 -119242209 + MIR SINE MIR 19 76 -132 199 253 241 0 chr4 83086788 83086867 -119241480 - L3 LINE CR1 -10 1567 1470 642 190 8 8 chr4 83087026 83087147 -119241200 + FLAM_C SINE Alu 1 121 -22 645 231 0 51 chr4 83087175 83087331 -119241016 + AluJo SINE Alu 72 219 -93 254 317 112 69 chr4 83088441 83088744 -119239603 + L2 LINE L2 2149 2464 -850 461 303 50 77 chr4 83089449 83089710 -119238637 - L2 LINE L2 0 3272 3019 242 273 184 56 chr4 83089851 83090118 -119238229 - L2 LINE L2 -576 2738 2438 3249 105 56 33 chr4 83091161 83091675 -119236672 - MER1A DNA MER1_type 0 527 2 251 286 0 106 chr4 83092910 83093071 -119235276 + MIR SINE MIR 13 156 -106 25 65 0 0 chr4 83093078 83093124 -119235223 + AT_rich Low_complexity Low_complexity 1 46 0 2474 174 53 5 chr4 83093949 83094385 -119233962 + LTR32 LTR ERVL 15 471 0 536 328 29 17 chr4 83094466 83094704 -119233643 - MIR SINE MIR -1 261 21 225 0 0 0 chr4 83095727 83095752 -119232595 + (TA)n Simple_repeat Simple_repeat 1 25 0 394 151 27 41 chr4 83095911 83095925 -119232422 + AluJ/FRAM SINE Alu 232 245 -57 1636 150 0 30 chr4 83095925 83096191 -119232156 + AluJb SINE Alu 12 269 -43 394 151 27 41 chr4 83096191 83096249 -119232098 + AluJ/FRAM SINE Alu 245 288 -14 21 0 0 0 chr4 83096249 83096270 -119232077 + AT_rich Low_complexity Low_complexity 1 21 0 200 211 0 58 chr4 83097315 83097367 -119230980 + (TAGG)n Simple_repeat Simple_repeat 2 50 0 324 300 0 33 chr4 83098034 83098124 -119230223 + L2 LINE L2 3183 3269 -3 24 53 0 0 chr4 83098302 83098340 -119230007 + AT_rich Low_complexity Low_complexity 1 38 0 228 277 191 0 chr4 83098494 83098588 -119229759 + MIR SINE MIR 32 143 -65 339 271 10 10 chr4 83100988 83101084 -119227263 + MIR3 SINE MIR 89 184 -24 1716 257 70 29 chr4 83101343 83102329 -119226018 - L1M4 LINE L1 -2839 3307 2282 7678 26 0 0 chr4 83102333 83103372 -119224975 - L1PA4 LINE L1 -1 6154 5115 305 40 60 0 chr4 83103372 83103422 -119224925 - L1PA4 LINE L1 -1763 4383 4331 1905 150 7 0 chr4 83103423 83103709 -119224638 - AluSx SINE Alu -24 288 1 348 251 56 23 chr4 83103833 83103983 -119224364 - L1MEc LINE L1 -2814 3401 3246 251 270 90 9 chr4 83104379 83104490 -119223857 - L1MEc LINE L1 -4734 1662 1543 2731 164 28 9 chr4 83104747 83105210 -119223137 + MER70A LTR ERVL 1 472 0 2148 99 41 0 chr4 83105584 83105747 -119222600 - AluSx SINE Alu -7 305 123 414 0 0 0 chr4 83105747 83105793 -119222554 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 2148 99 41 0 chr4 83105793 83105922 -119222425 - AluSx SINE Alu -189 123 1 1463 209 95 24 chr4 83106570 83106979 -119221368 + MLT1C LTR MaLR 21 467 0 936 173 23 12 chr4 83107678 83107851 -119220496 + MER20 DNA MER1_type 41 215 -4 232 315 139 0 chr4 83108282 83108390 -119219957 + MIR3 SINE MIR 50 172 -36 434 277 81 35 chr4 83108650 83108958 -119219389 + MLT1J2 LTR MaLR 61 447 -64 183 219 49 0 chr4 83109145 83109186 -119219161 + L2 LINE L2 3261 3303 -10 1038 152 0 0 chr4 83109195 83109353 -119218994 + MER70B LTR ERVL 1 158 -420 432 79 0 32 chr4 83109391 83109454 -119218893 - AluJo SINE Alu -20 292 232 * 635 214 79 14 chr4 83109451 83109591 -119218756 - AluJo SINE Alu -163 149 1 273 98 0 0 chr4 83110989 83111030 -119217317 + (A)n Simple_repeat Simple_repeat 1 41 0 248 305 0 21 chr4 83111501 83111596 -119216751 + MLT1I LTR MaLR 165 257 -292 318 127 28 0 chr4 83111750 83111817 -119216530 + MLT1I LTR MaLR 332 450 0 23 0 0 0 chr4 83113397 83113420 -119214927 + GC_rich Low_complexity Low_complexity 1 23 0 618 256 80 23 chr4 83113805 83114106 -119214241 + L1M4 LINE L1 2697 3014 -3132 1513 185 123 46 chr4 83114217 83114295 -119214052 - MER39 LTR ERV1 0 707 636 1754 144 6 72 chr4 83114295 83114628 -119213719 + AluJb SINE Alu 1 311 -1 1513 185 123 46 chr4 83114628 83114964 -119213383 - MER39 LTR ERV1 -71 636 327 2011 127 3 16 chr4 83114964 83115271 -119213076 - AluSx SINE Alu -9 303 1 1513 185 123 46 chr4 83115271 83115473 -119212874 - MER39 LTR ERV1 -380 327 1 781 245 43 28 chr4 83115539 83115792 -119212555 + MIR SINE MIR 2 258 -4 2166 75 0 0 chr4 83116346 83116612 -119211735 + AluY SINE Alu 34 299 -12 257 73 0 24 chr4 83117425 83117466 -119210881 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 229 299 75 0 chr4 83117546 83117613 -119210734 - L2 LINE L2 -17 3255 3184 181 268 103 21 chr4 83117638 83117735 -119210612 + L2 LINE L2 1959 2063 -1251 384 361 33 39 chr4 83118316 83118646 -119209701 + L2 LINE L2 1353 1680 -1634 8823 180 28 23 chr4 83118776 83119433 -119208914 - L1PA16 LINE L1 -1 6165 5513 1897 157 50 19 chr4 83119433 83119797 -119208550 - THE1C LTR MaLR 0 375 1 8823 180 28 23 chr4 83119797 83122146 -119206201 - L1PA16 LINE L1 -653 5513 3139 378 0 0 0 chr4 83122449 83122491 -119205856 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 933 185 22 22 chr4 83122491 83122669 -119205678 - AluJb SINE Alu -14 298 121 858 148 37 0 chr4 83122711 83122846 -119205501 - FLAM_C SINE Alu -3 140 1 1777 152 76 34 chr4 83122850 83123402 -119204945 - L1MD1 LINE L1 0 6242 5569 263 300 179 47 chr4 83123984 83124174 -119204173 + MIR SINE MIR 33 247 -15 347 319 42 8 chr4 83125417 83125536 -119202811 + L2 LINE L2 3149 3271 -1 311 287 123 33 chr4 83125674 83125796 -119202551 + L3b LINE CR1 1425 1557 -26 185 241 24 96 chr4 83125881 83125964 -119202383 - MIR SINE MIR 0 262 186 231 339 0 0 chr4 83127588 83127650 -119200697 + L2 LINE L2 3201 3262 -10 318 301 87 19 chr4 83127844 83127947 -119200400 + L2 LINE L2 3154 3263 -9 233 233 13 80 chr4 83129544 83129694 -119198653 + Charlie7 DNA MER1_type 2473 2612 0 23 54 0 0 chr4 83130613 83130650 -119197697 + AT_rich Low_complexity Low_complexity 1 37 0 778 152 0 8 chr4 83130660 83130785 -119197562 + FLAM_C SINE Alu 2 125 -18 292 306 108 38 chr4 83131080 83131266 -119197081 + MIR3 SINE MIR 3 201 -7 997 133 0 118 chr4 83131808 83132003 -119196344 - AluJb SINE Alu -140 172 1 249 261 69 46 chr4 83132011 83132041 -119196306 - L1MA10 LINE L1 -4 6330 5901 1784 180 22 48 chr4 83132041 83132441 -119195906 - MLT1B LTR MaLR 0 390 1 1633 238 69 28 chr4 83132441 83133017 -119195330 - L1ME1 LINE L1 -20 6146 5547 4194 197 53 63 chr4 83133046 83134558 -119193789 - L1MA7 LINE L1 -8 6283 4802 2249 104 6 25 chr4 83134558 83134874 -119193473 - AluSx SINE Alu -2 310 1 4194 197 53 63 chr4 83134874 83135766 -119192581 - L1MA7 LINE L1 -1489 4802 3903 2504 75 0 0 chr4 83135796 83136104 -119192243 - AluY SINE Alu -3 308 1 758 283 53 75 chr4 83136105 83137239 -119191108 - L1MCc LINE L1 -4669 2453 1129 300 355 21 36 chr4 83137641 83138027 -119190320 - L1MCc LINE L1 -5975 448 69 202 352 34 23 chr4 83138085 83138173 -119190174 + MIR SINE MIR 19 107 -101 924 280 12 12 chr4 83138719 83138976 -119189371 - MIR SINE MIR 0 262 6 213 328 78 82 chr4 83139437 83139520 -119188827 - L2 LINE L2 -66 3206 3124 821 289 19 0 chr4 83139520 83139776 -119188571 - MIR SINE MIR 0 262 2 213 328 78 82 chr4 83139776 83139924 -119188423 - L2 LINE L2 -148 3124 2976 24 67 0 0 chr4 83140794 83140839 -119187508 + AT_rich Low_complexity Low_complexity 1 45 0 2915 20 0 3 chr4 83141165 83141508 -119186839 - L1PA2 LINE L1 0 6155 5814 294 167 0 0 chr4 83141508 83141568 -119186779 + CT-rich Low_complexity Low_complexity 4 63 0 213 276 112 43 chr4 83141596 83141712 -119186635 + MIR3 SINE MIR 58 181 -27 519 172 60 60 chr4 83142130 83142264 -119186083 + MLT1D LTR MaLR 4 137 -368 26 0 0 0 chr4 83142264 83142290 -119186057 + AT_rich Low_complexity Low_complexity 1 26 0 41052 49 3 3 chr4 83142290 83148440 -119179907 - L1PA4 LINE L1 -4 6151 2 1310 212 34 28 chr4 83148459 83148780 -119179567 + MLT1D LTR MaLR 183 505 0 256 278 15 45 chr4 83149459 83149592 -119178755 - LTR16A1 LTR ERVL -271 186 58 26 30 0 0 chr4 83152300 83152333 -119176014 + AT_rich Low_complexity Low_complexity 1 33 0 330 214 0 61 chr4 83152814 83152912 -119175435 + L1MC4 LINE L1 6612 6703 -1339 258 329 114 7 chr4 83154838 83154978 -119173369 + MIR3 SINE MIR 2 156 -52 618 251 29 34 chr4 83154983 83155190 -119173157 + L1ME3A LINE L1 5943 6148 -22 765 135 0 0 chr4 83155872 83155998 -119172349 + (TG)n Simple_repeat Simple_repeat 2 127 0 183 156 0 0 chr4 83156110 83156142 -119172205 + T-rich Low_complexity Low_complexity 1 32 0 305 225 7 94 chr4 83156371 83156509 -119171838 + MIR SINE MIR 124 249 -13 22 70 0 0 chr4 83156678 83156721 -119171626 + AT_rich Low_complexity Low_complexity 1 43 0 181 360 114 26 chr4 83158055 83158169 -119170178 - L3 LINE CR1 -1032 545 422 2196 155 46 10 chr4 83159388 83159811 -119168536 - L1MB1 LINE L1 -39 6129 5689 241 140 88 0 chr4 83159826 83159883 -119168464 - L1MB1 LINE L1 -688 5478 5417 799 268 145 14 chr4 83159978 83160532 -119167815 - L1ME LINE L1 -389 6053 5430 317 286 130 4 chr4 83160667 83160898 -119167449 - L1ME LINE L1 -1158 5268 5009 22 35 0 0 chr4 83160940 83160969 -119167378 + AT_rich Low_complexity Low_complexity 1 29 0 624 283 61 47 chr4 83160980 83161021 -119167326 - L1ME LINE L1 -1726 4700 4661 1365 188 37 40 chr4 83161021 83161319 -119167028 - AluSx SINE Alu -15 297 1 624 283 61 47 chr4 83161319 83161684 -119166663 - L1ME LINE L1 -1765 4661 4288 701 271 60 60 chr4 83161693 83162029 -119166318 + LTR33 LTR ERVL 11 346 -175 447 173 70 32 chr4 83162082 83162238 -119166109 - L1ME LINE L1 -2145 4281 4120 1601 240 29 19 chr4 83162323 83162739 -119165608 - LTR52 LTR ERVL -1 420 1 26 30 0 0 chr4 83162764 83162797 -119165550 + AT_rich Low_complexity Low_complexity 1 33 0 263 196 20 0 chr4 83162840 83162891 -119165456 + HAL1b LINE L1 382 433 -915 2361 69 20 3 chr4 83163608 83163914 -119164433 - AluY SINE Alu 0 311 1 312 267 20 0 chr4 83164593 83164694 -119163653 - L1ME LINE L1 -2525 3901 3799 619 232 99 55 chr4 83164697 83165132 -119163215 - L1MC5 LINE L1 -34 7927 7474 423 282 139 38 chr4 83165394 83165710 -119162637 - L1ME LINE L1 -5101 1325 978 4707 78 55 1 chr4 83165750 83166408 -119161939 + L1PA10 LINE L1 5465 6157 -11 264 308 50 0 chr4 83167038 83167197 -119161150 - L1M4 LINE L1 -1488 4658 4492 423 238 168 64 chr4 83167231 83167529 -119160818 - L1M4 LINE L1 -2220 3926 3598 257 294 105 18 chr4 83167684 83167912 -119160435 - L1M4 LINE L1 -2716 3430 3183 404 244 97 51 chr4 83168152 83168328 -119160019 + MER5A DNA MER1_type 1 184 -5 335 294 34 14 chr4 83168625 83168771 -119159576 - L1MC4 LINE L1 -3 8039 7891 5116 267 79 45 chr4 83168865 83171715 -119156632 - L1MC4a LINE L1 -95 7713 4758 4434 167 22 21 chr4 83172094 83172981 -119155366 - L1PA11 LINE L1 -2546 3600 2713 10338 145 23 6 chr4 83172984 83175508 -119152839 + L1PA11 LINE L1 3624 6173 -1 467 216 14 178 chr4 83175612 83175825 -119152522 - MER91B DNA MER1_type -11 179 2 2954 115 0 0 chr4 83175895 83176314 -119152033 + L1PA11 LINE L1 5756 6174 0 264 313 106 73 chr4 83177136 83177315 -119151032 + MIR SINE MIR 4 188 -74 892 198 60 0 chr4 83177735 83177917 -119150430 + MER3 DNA MER1_type 17 209 0 511 340 32 0 chr4 83180092 83180280 -119148067 - MIR SINE MIR 0 262 69 1544 199 27 63 chr4 83180623 83180816 -119147531 - MSTD LTR MaLR 0 396 224 189 0 0 0 chr4 83180816 83180837 -119147510 + (GA)n Simple_repeat Simple_repeat 2 22 0 1544 199 27 63 chr4 83180837 83181054 -119147293 - MSTD LTR MaLR -172 224 1 466 348 111 34 chr4 83181659 83181984 -119146363 - L2 LINE L2 -7 3265 2916 6902 30 0 0 chr4 83181988 83182826 -119145521 - L1PA3 LINE L1 -747 5399 4562 6355 32 0 0 chr4 83182826 83183571 -119144776 + L1PA3 LINE L1 5405 6155 0 808 304 142 46 chr4 83183612 83184289 -119144058 - L2 LINE L2 -422 2892 2151 758 187 0 72 chr4 83184842 83185008 -119143339 + MER63 DNA MER1_type 6 785 -277 21 57 0 0 chr4 83185701 83185736 -119142611 + AT_rich Low_complexity Low_complexity 1 35 0 761 117 55 7 chr4 83185891 83186036 -119142311 + L1MA3 LINE L1 6154 6305 0 385 273 72 29 chr4 83188131 83188270 -119140077 + L2 LINE L2 3169 3313 0 198 222 235 12 chr4 83188722 83188803 -119139544 - MIR SINE MIR -65 143 45 21 0 0 0 chr4 83189202 83189223 -119139124 + AT_rich Low_complexity Low_complexity 1 21 0 620 267 102 6 chr4 83190360 83190536 -119137811 - MIR SINE MIR -57 205 13 2131 117 7 0 chr4 83190624 83190923 -119137424 + AluY SINE Alu 11 311 0 25 31 0 0 chr4 83191599 83191631 -119136716 + AT_rich Low_complexity Low_complexity 1 32 0 3817 95 8 0 chr4 83191631 83192156 -119136191 - L1PA16 LINE L1 -9 6157 5629 396 59 0 0 chr4 83192187 83192238 -119136109 + (CA)n Simple_repeat Simple_repeat 2 52 0 25 0 0 0 chr4 83192820 83192845 -119135502 + AT_rich Low_complexity Low_complexity 1 25 0 354 300 101 22 chr4 83194678 83194860 -119133487 - MIR3 SINE MIR -5 203 11 239 246 0 18 chr4 83194944 83195001 -119133346 + CT-rich Low_complexity Low_complexity 2 57 0 206 189 0 19 chr4 83195015 83195068 -119133279 + CT-rich Low_complexity Low_complexity 2 53 0 1532 183 0 11 chr4 83195268 83195542 -119132805 + AluJo SINE Alu 41 311 -1 21 36 0 0 chr4 83196002 83196030 -119132317 + AT_rich Low_complexity Low_complexity 1 28 0 1259 172 117 40 chr4 83197388 83197661 -119130686 - AluJo SINE Alu -14 298 5 1359 248 65 114 chr4 83198460 83199178 -119129169 - MER21B LTR ERV1 -157 706 24 741 250 102 10 chr4 83201103 83201299 -119127048 + MIR SINE MIR 7 220 -42 234 167 21 0 chr4 83202682 83202730 -119125617 - L1ME LINE L1 -259 5862 5814 * 5367 111 13 0 chr4 83202729 83203489 -119124858 + L1PA15 LINE L1 5391 6160 -5 2379 84 3 0 chr4 83203556 83203853 -119124494 + AluSx SINE Alu 1 298 -14 332 267 104 0 chr4 83203858 83203993 -119124354 - L1ME LINE L1 -360 5761 5613 250 318 0 0 chr4 83204944 83205010 -119123337 + MIR SINE MIR 41 106 -156 345 308 53 8 chr4 83205269 83205402 -119122945 + MIR3 SINE MIR 6 144 -64 25 0 0 0 chr4 83205625 83205650 -119122697 + AT_rich Low_complexity Low_complexity 1 25 0 708 221 82 26 chr4 83206683 83206878 -119121469 + MER63A DNA MER1_type 3 208 -2 444 303 136 25 chr4 83206884 83207046 -119121301 - MER91A DNA MER1_type -16 180 1 192 77 0 0 chr4 83207124 83207150 -119121197 + (TG)n Simple_repeat Simple_repeat 1 26 0 274 259 70 66 chr4 83207834 83208045 -119120302 - MIR SINE MIR -46 216 8 510 257 170 24 chr4 83208197 83208403 -119119944 + MIR SINE MIR 23 258 -4 532 197 0 14 chr4 83209434 83209576 -119118771 + CT-rich Low_complexity Low_complexity 3 142 0 745 257 16 5 chr4 83209599 83209786 -119118561 + MIR SINE MIR 15 203 -59 26 0 0 0 chr4 83209981 83210007 -119118340 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr4 83210692 83210729 -119117618 + AT_rich Low_complexity Low_complexity 1 37 0 251 328 40 45 chr4 83212229 83212406 -119115941 + MIR3 SINE MIR 2 177 -31 23 0 0 0 chr4 83214025 83214048 -119114299 + AT_rich Low_complexity Low_complexity 1 23 0 278 197 58 66 chr4 83215856 83215993 -119112354 + MER113 DNA MER1_type? 82 217 -304 198 266 81 48 chr4 83216470 83216594 -119111753 + L2 LINE L2 2085 2212 -1102 802 324 99 27 chr4 83216607 83216638 -119111709 + L2 LINE L2 2631 2658 -655 351 44 0 0 chr4 83216638 83216683 -119111664 + (TC)n Simple_repeat Simple_repeat 1 45 0 802 324 99 27 chr4 83216683 83217285 -119111062 + L2 LINE L2 2658 3301 -12 1063 250 125 3 chr4 83217941 83218253 -119110094 + MER69 DNA AcHobo 203 552 -1974 532 207 106 11 chr4 83218254 83218433 -119109914 + MER69 DNA AcHobo 2329 2524 -2 636 238 45 25 chr4 83218883 83219085 -119109262 + L2 LINE L2 3108 3313 0 27 62 0 0 chr4 83219404 83219452 -119108895 + AT_rich Low_complexity Low_complexity 1 48 0 237 65 0 0 chr4 83221542 83221573 -119106774 + (TATG)n Simple_repeat Simple_repeat 2 32 0 726 244 179 5 chr4 83223218 83223419 -119104928 + MIR SINE MIR 2 237 -25 623 223 0 36 chr4 83223414 83223553 -119104794 + MIR SINE MIR 95 228 -34 * 237 262 49 0 chr4 83224123 83224184 -119104163 - L2 LINE L2 0 3272 3209 1045 258 29 91 chr4 83224486 83224660 -119103687 + L2 LINE L2 2826 3009 -304 2435 62 0 19 chr4 83224660 83224969 -119103378 - AluY SINE Alu -8 303 1 1045 258 29 91 chr4 83224969 83225310 -119103037 + L2 LINE L2 3009 3309 -4 637 345 86 30 chr4 83225543 83225879 -119102468 + L2 LINE L2 2917 3271 -1 21 36 0 0 chr4 83227826 83227854 -119100493 + AT_rich Low_complexity Low_complexity 1 28 0 219 69 0 0 chr4 83228364 83228393 -119099954 + (CA)n Simple_repeat Simple_repeat 2 30 0 520 242 217 10 chr4 83228985 83229183 -119099164 - MIR SINE MIR -15 247 9 803 261 86 4 chr4 83229625 83229870 -119098477 + MER2 DNA MER2_type 81 345 0 11180 174 30 7 chr4 83229901 83233036 -119095311 + L1MA4 LINE L1 3070 6279 -21 186 43 0 0 chr4 83233089 83233112 -119095235 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 27 29 0 0 chr4 83233166 83233200 -119095147 + AT_rich Low_complexity Low_complexity 1 34 0 317 324 86 31 chr4 83233238 83233352 -119094995 - L1 LINE L1 -1644 4502 4396 968 158 11 0 chr4 83233352 83233536 -119094811 - L1MA8 LINE L1 -1 6290 6105 317 324 86 31 chr4 83233536 83233677 -119094670 - L1 LINE L1 -1750 4396 4233 28 95 0 0 chr4 83234355 83234439 -119093908 + AT_rich Low_complexity Low_complexity 1 84 0 2448 237 67 16 chr4 83234497 83235227 -119093120 - L1ME2 LINE L1 -9 6155 5389 2025 250 44 10 chr4 83235241 83235826 -119092521 - L1ME1 LINE L1 -5 6230 5626 3123 145 8 2 chr4 83235828 83237615 -119090732 + L1PA13 LINE L1 4212 6144 -19 1076 243 37 18 chr4 83237655 83238196 -119090151 - L1ME1 LINE L1 -614 5639 5085 * 8678 187 33 12 chr4 83238191 83240986 -119087361 - L1PA15 LINE L1 -1 6164 3301 2365 105 32 113 chr4 83240986 83241483 -119086864 - LTR46 LTR ERV1 -2 458 2 8678 187 33 12 chr4 83241483 83241605 -119086742 - L1PA15 LINE L1 -2864 3301 3183 3100 186 55 49 chr4 83241605 83242431 -119085916 - MER21A LTR ERV1 -48 815 5 236 229 29 0 chr4 83242433 83242503 -119085844 - L1ME1 LINE L1 -3156 3059 2988 2233 136 0 6 chr4 83242555 83242916 -119085431 - L1PA13 LINE L1 -11 6152 5794 1562 267 126 21 chr4 83242916 83244494 -119083853 - L1ME1 LINE L1 -3227 2988 1272 265 344 73 36 chr4 83244826 83245018 -119083329 - L2 LINE L2 -218 3054 2856 234 242 0 0 chr4 83246924 83246990 -119081357 + (TCCA)n Simple_repeat Simple_repeat 4 69 0 219 69 0 0 chr4 83247012 83247041 -119081306 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1102 183 87 48 chr4 83247292 83247544 -119080803 + AluSx SINE Alu 1 262 -50 454 164 31 23 chr4 83247550 83247678 -119080669 + GA-rich Low_complexity Low_complexity 3 131 0 318 328 34 0 chr4 83247678 83247797 -119080550 + MIR SINE MIR 19 141 -67 2144 125 7 0 chr4 83248151 83248455 -119079892 - AluSx SINE Alu -6 306 1 222 346 13 39 chr4 83249595 83249673 -119078674 - L2 LINE L2 -25 3247 3172 563 297 134 22 chr4 83250449 83250725 -119077622 - L3 LINE CR1 -2 1575 1269 191 320 93 21 chr4 83253835 83253932 -119074415 - MIR SINE MIR -85 123 20 5510 231 50 23 chr4 83254147 83255689 -119072658 - L1MC4 LINE L1 -1 8041 6459 21 0 0 0 chr4 83256232 83256253 -119072094 + AT_rich Low_complexity Low_complexity 1 21 0 1679 202 11 19 chr4 83256319 83256680 -119071667 - L1ME1 LINE L1 -1 6165 5808 8339 180 47 15 chr4 83256688 83258518 -119069829 - L1MA9 LINE L1 -150 6162 4216 195 42 0 0 chr4 83258518 83258542 -119069805 + (TG)n Simple_repeat Simple_repeat 1 24 0 8339 180 47 15 chr4 83258542 83259143 -119069204 - L1MA9 LINE L1 -2096 4216 3636 352 302 48 35 chr4 83259232 83259543 -119068804 + L1MEc LINE L1 1949 2263 -4133 476 269 44 74 chr4 83259571 83260061 -119068286 - L1MCa LINE L1 -4476 2029 1413 2342 92 0 0 chr4 83260061 83260364 -119067983 - AluY SINE Alu -7 304 2 476 269 44 74 chr4 83260364 83260532 -119067815 - L1MCa LINE L1 -5092 1413 1242 234 256 25 58 chr4 83260547 83260668 -119067679 - L1MCa LINE L1 -5066 1350 1234 359 359 60 50 chr4 83260887 83261185 -119067162 - L1MCa LINE L1 -5717 699 399 22 0 0 0 chr4 83261353 83261375 -119066972 + AT_rich Low_complexity Low_complexity 1 22 0 14815 204 63 21 chr4 83262018 83262169 -119066178 - L1PA15 LINE L1 -1 6815 6672 1912 113 71 42 chr4 83262169 83262523 -119065824 + THE1B LTR MaLR 1 364 0 14815 204 63 21 chr4 83262523 83263714 -119064633 - L1PA15 LINE L1 -144 6672 5532 287 49 24 0 chr4 83263714 83263755 -119064592 + (TTTTG)n Simple_repeat Simple_repeat 1 42 0 14815 204 63 21 chr4 83263755 83264235 -119064112 - L1PA15 LINE L1 -1284 5532 5074 1505 214 14 4 chr4 83264235 83264540 -119063807 - AluJo SINE Alu 0 309 2 14815 204 63 21 chr4 83264540 83267248 -119061099 - L1PA15 LINE L1 -1742 5074 1861 6918 72 0 0 chr4 83267248 83268229 -119060118 - L1PA8 LINE L1 0 6172 5191 14815 204 63 21 chr4 83268229 83270172 -119058175 - L1PA15 LINE L1 -4955 1861 1 768 281 145 25 chr4 83271090 83271449 -119056898 + MLT1I LTR MaLR 8 409 0 1959 60 3 70 chr4 83272751 83273050 -119055297 - LTR66 LTR ERVL 0 610 332 546 61 0 0 chr4 83273051 83273117 -119055230 - LTR66 LTR ERVL -209 401 336 1291 94 6 11 chr4 83273153 83273334 -119055013 - LTR66 LTR ERVL -211 399 220 372 321 82 13 chr4 83273334 83273639 -119054708 - L1ME4a LINE L1 -253 5868 5543 446 309 184 45 chr4 83274026 83274585 -119053762 - L1ME4a LINE L1 -1112 5034 4398 32 75 0 0 chr4 83274624 83274691 -119053656 + AT_rich Low_complexity Low_complexity 1 67 0 21 36 0 0 chr4 83275462 83275490 -119052857 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 83277576 83277598 -119050749 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr4 83277821 83277862 -119050485 + AT_rich Low_complexity Low_complexity 1 41 0 444 330 67 20 chr4 83279075 83279421 -119048926 - L1ME3A LINE L1 -208 5962 5601 4734 64 17 2 chr4 83279421 83280439 -119047908 + MER11A LTR ERVK 1 1266 0 738 238 22 5 chr4 83281113 83281298 -119047049 + L1M4b LINE L1 2 189 -6670 * 1203 246 19 16 chr4 83281278 83281595 -119046752 + L1M4b LINE L1 863 1180 -5679 * 1606 237 54 62 chr4 83281592 83281827 -119046520 + L1M4b LINE L1 1665 1900 -5059 9859 71 14 1 chr4 83281827 83283914 -119044433 + L1PA7 LINE L1 4059 6156 0 1606 237 54 62 chr4 83283914 83284344 -119044003 + L1M4b LINE L1 1900 2326 -4633 673 148 0 0 chr4 83284358 83284466 -119043881 - L1M2 LINE L1 -629 5671 5564 4457 129 49 75 chr4 83284466 83285483 -119042864 + pTR5 LTR ERV1 745 2025 -413 366 245 10 0 chr4 83285483 83285581 -119042766 + LTR30 LTR ERV1 544 642 -80 1498 93 37 5 chr4 83285582 83285798 -119042549 + pTR5 LTR ERV1 170 392 -2046 1278 135 146 30 chr4 83285798 83286007 -119042340 - L1M2 LINE L1 -743 5569 5321 811 210 60 130 chr4 83286007 83286407 -119041940 + MLT1A2 LTR MaLR 1 372 -2 1278 135 146 30 chr4 83286407 83286464 -119041883 - L1M2 LINE L1 -991 5321 5272 1519 113 51 16 chr4 83286484 83286740 -119041607 - L1PA13 LINE L1 -16 6147 5883 573 184 19 0 chr4 83287051 83287209 -119041138 + (TA)n Simple_repeat Simple_repeat 2 162 0 261 0 0 0 chr4 83287209 83287238 -119041109 + (GA)n Simple_repeat Simple_repeat 2 30 0 289 264 21 71 chr4 83287378 83287518 -119040829 + MIR SINE MIR 129 261 -1 1472 167 12 0 chr4 83287549 83287789 -119040558 - MSTA LTR MaLR -1 427 185 6926 70 4 0 chr4 83287809 83288812 -119039535 - L1PA7 LINE L1 -3 6151 5149 6065 91 12 0 chr4 83288812 83289666 -119038681 + L1PA7 LINE L1 4261 5124 -1022 843 157 193 0 chr4 83289666 83289832 -119038515 - MSTA LTR MaLR -230 198 1 668 248 128 62 chr4 83289878 83290081 -119038266 + MLT1G1 LTR MaLR 2 231 -364 934 217 11 0 chr4 83290081 83290256 -119038091 + MER45A DNA AcHobo 2 178 0 668 248 128 62 chr4 83290256 83290342 -119038005 + MLT1G1 LTR MaLR 231 310 -285 284 358 36 15 chr4 83290376 83290513 -119037834 - L2 LINE L2 -269 3044 2905 1114 140 6 0 chr4 83291039 83291210 -119037137 + MSTD LTR MaLR 2 173 -223 347 221 144 0 chr4 83292865 83292969 -119035378 + L2 LINE L2 3193 3311 -2 277 308 94 0 chr4 83293743 83293860 -119034487 + MIR SINE MIR 59 186 -76 7073 32 7 1 chr4 83294604 83295456 -119032891 - L1PA5 LINE L1 0 6154 5298 2258 126 24 21 chr4 83295702 83296074 -119032273 + THE1C LTR MaLR 1 373 -2 216 0 0 0 chr4 83296626 83296650 -119031697 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 797 317 71 31 chr4 83296740 83297293 -119031054 + L2 LINE L2 2711 3282 -31 674 201 160 46 chr4 83297393 83297587 -119030760 + AluJo SINE Alu 75 290 -22 24 0 0 0 chr4 83300505 83300529 -119027818 + AT_rich Low_complexity Low_complexity 1 24 0 268 266 50 72 chr4 83300586 83300725 -119027622 - MIR SINE MIR -50 212 77 219 324 81 0 chr4 83300756 83300830 -119027517 - MER91C DNA MER1_type -30 110 31 363 264 114 85 chr4 83300846 83301047 -119027300 + MIR SINE MIR 6 212 -50 2368 221 15 15 chr4 83301748 83301966 -119026381 + L1M4 LINE L1 4279 4496 -1650 2231 86 0 26 chr4 83301966 83302268 -119026079 + AluSg SINE Alu 1 294 -16 2368 221 15 15 chr4 83302268 83302646 -119025701 + L1M4 LINE L1 4495 4875 -1271 623 130 0 0 chr4 83302652 83302744 -119025603 + AluSg/x SINE Alu 180 271 -39 477 115 13 0 chr4 83302880 83302958 -119025389 + MSTC LTR MaLR 343 421 -7 31 0 0 0 chr4 83303769 83303800 -119024547 + AT_rich Low_complexity Low_complexity 1 31 0 400 286 125 30 chr4 83304272 83304440 -119023907 - MIR3 SINE MIR -5 203 20 331 315 72 9 chr4 83304859 83304970 -119023377 + L2 LINE L2 3192 3309 -4 189 0 0 0 chr4 83307189 83307210 -119021137 + (A)n Simple_repeat Simple_repeat 1 21 0 2169 162 24 22 chr4 83307755 83308168 -119020179 - MLT2D LTR ERVL 0 414 1 26 30 0 0 chr4 83308529 83308562 -119019785 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr4 83312247 83312277 -119016070 + AT_rich Low_complexity Low_complexity 1 30 0 2459 24 0 10 chr4 83312936 83313226 -119015121 + AluY SINE Alu 23 309 -2 2483 65 0 0 chr4 83313502 83313811 -119014536 + AluY SINE Alu 1 309 -2 1393 60 0 4 chr4 83314149 83314365 -119013982 + AluY SINE Alu 1 301 -10 409 234 152 82 chr4 83314740 83314984 -119013363 + LTR16C LTR ERVL 231 491 0 206 130 0 37 chr4 83315217 83315271 -119013076 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 21 0 0 0 chr4 83315657 83315678 -119012669 + AT_rich Low_complexity Low_complexity 1 21 0 265 321 104 0 chr4 83315741 83315847 -119012500 - L2 LINE L2 0 3272 3156 686 208 53 0 chr4 83315852 83315869 -119012478 - L1P LINE L1 -1512 4634 4619 6388 84 1 4 chr4 83315869 83317438 -119010909 - L1PA14 LINE L1 -3 6158 4600 * 10087 28 7 1 chr4 83317435 83319409 -119008938 - L1PA4 LINE L1 -2 6153 4168 686 208 53 0 chr4 83317438 83319541 -119008806 - L1P LINE L1 -1527 4619 4479 249 271 82 24 chr4 83319824 83319909 -119008438 - MLT1J LTR MaLR 0 511 422 644 273 77 36 chr4 83319931 83320151 -119008196 - MIR SINE MIR -13 249 21 35 63 0 0 chr4 83320566 83320629 -119007718 + AT_rich Low_complexity Low_complexity 1 63 0 2848 69 5 11 chr4 83320841 83321218 -119007129 + THE1C LTR MaLR 1 375 0 253 343 164 8 chr4 83321464 83321598 -119006749 - MIR3 SINE MIR -34 174 20 1636 190 45 132 chr4 83321618 83322155 -119006192 + MLT1D LTR MaLR 1 490 -15 475 228 123 18 chr4 83322375 83322546 -119005801 + MLT1H LTR MaLR 25 213 -336 354 277 0 45 chr4 83322814 83322926 -119005421 - L2 LINE L2 -194 3078 2972 848 239 88 10 chr4 83325091 83325296 -119003051 + MIR SINE MIR 21 241 -21 260 314 95 118 chr4 83325309 83325666 -119002681 - L2 LINE L2 -52 3220 2872 21 36 0 0 chr4 83325682 83325710 -119002637 + AT_rich Low_complexity Low_complexity 1 28 0 213 167 24 0 chr4 83325940 83325982 -119002365 + (TA)n Simple_repeat Simple_repeat 1 43 0 508 288 122 11 chr4 83326127 83326405 -119001942 - L1ME LINE L1 -328 5793 5485 23 54 0 0 chr4 83326753 83326790 -119001557 + AT_rich Low_complexity Low_complexity 1 37 0 1014 90 45 0 chr4 83326906 83327062 -119001285 - L1MA6 LINE L1 0 6300 6138 807 167 0 0 chr4 83327068 83327200 -119001147 - L1MA6 LINE L1 -290 6010 5879 797 107 0 16 chr4 83327205 83327327 -119001020 + L1MA6 LINE L1 5757 5876 -424 303 28 0 0 chr4 83327518 83327554 -119000793 + (CA)n Simple_repeat Simple_repeat 2 37 0 324 161 0 0 chr4 83327566 83327647 -119000700 + (TA)n Simple_repeat Simple_repeat 2 82 0 240 292 0 0 chr4 83328221 83328286 -119000061 + MARNA DNA Mariner 344 408 -178 1024 307 61 13 chr4 83328805 83329414 -118998933 + L1ME4a LINE L1 5278 5915 -206 324 132 0 19 chr4 83329427 83329480 -118998867 + MLT1B LTR MaLR 4 55 -335 381 102 0 0 chr4 83329498 83329557 -118998790 + (TCCC)n Simple_repeat Simple_repeat 4 62 0 6125 161 36 44 chr4 83329570 83329931 -118998416 - L1PB3 LINE L1 -3 6151 5789 297 0 0 0 chr4 83329931 83329964 -118998383 + (CA)n Simple_repeat Simple_repeat 2 34 0 6125 161 36 44 chr4 83329964 83331345 -118997002 - L1PB3 LINE L1 -365 5789 4425 4637 71 3 0 chr4 83331345 83331934 -118996413 + LTR10C LTR ERV1 1 591 0 6125 161 36 44 chr4 83331934 83332268 -118996079 - L1PB3 LINE L1 -1729 4425 4090 1048 209 50 100 chr4 83332318 83332658 -118995689 + MLT1B LTR MaLR 68 390 0 285 183 113 49 chr4 83332689 83332831 -118995516 + L1ME4a LINE L1 5971 6121 0 370 341 22 20 chr4 83333146 83333343 -118995004 + MIR SINE MIR 5 199 -63 22 0 0 0 chr4 83333674 83333696 -118994651 + AT_rich Low_complexity Low_complexity 1 22 0 3510 187 51 37 chr4 83333927 83334486 -118993861 + L1MB7 LINE L1 5152 5702 -482 2457 89 0 0 chr4 83334486 83334789 -118993558 + AluSq SINE Alu 1 303 -10 3510 187 51 37 chr4 83334789 83335091 -118993256 + L1MB7 LINE L1 5702 6027 -157 434 89 51 38 chr4 83335091 83335170 -118993177 + MADE1 DNA Mariner 1 80 0 3510 187 51 37 chr4 83335170 83335282 -118993065 + L1MB7 LINE L1 6027 6136 -48 5600 194 42 3 chr4 83335283 83336056 -118992291 - L1P5 LINE L1 -597 5554 4813 216 0 0 0 chr4 83336056 83336080 -118992267 + (TA)n Simple_repeat Simple_repeat 2 25 0 5600 194 42 3 chr4 83336080 83336578 -118991769 - L1P5 LINE L1 -1338 4813 4205 2365 73 3 3 chr4 83336578 83336880 -118991467 + AluY SINE Alu 1 302 -9 5600 194 42 3 chr4 83336880 83337145 -118991202 - L1P5 LINE L1 -1946 4205 3952 284 289 0 0 chr4 83337166 83337256 -118991091 + L1MC4 LINE L1 6614 6703 -1339 252 143 0 0 chr4 83337256 83337298 -118991049 + (TA)n Simple_repeat Simple_repeat 2 43 0 2507 109 3 0 chr4 83337304 83337670 -118990677 + L1PB1 LINE L1 5783 6149 -2 248 158 35 0 chr4 83337688 83337745 -118990602 + L1MB7 LINE L1 6126 6184 0 241 325 120 26 chr4 83337919 83338036 -118990311 + MIR3 SINE MIR 8 135 -73 1480 210 56 17 chr4 83338047 83338404 -118989943 + MLT2D LTR ERVL 4 374 -40 213 139 0 0 chr4 83338408 83338451 -118989896 + (TA)n Simple_repeat Simple_repeat 1 43 0 2372 39 45 0 chr4 83339477 83339763 -118988584 + AluY SINE Alu 1 299 -12 322 332 95 84 chr4 83339860 83340240 -118988107 - L2 LINE L2 -2 3270 2887 382 349 175 11 chr4 83340335 83340871 -118987476 - L2 LINE L2 -527 2787 2164 277 243 153 36 chr4 83340875 83340986 -118987361 - MER5B DNA MER1_type -3 175 52 517 337 106 39 chr4 83342132 83342710 -118985637 - L2 LINE L2 -36 3277 2662 240 280 148 19 chr4 83342716 83342980 -118985367 + L1ME3A LINE L1 5654 5951 -219 1399 282 78 22 chr4 83343066 83343567 -118984780 + MLT1E LTR MaLR 52 590 -3 336 309 88 46 chr4 83343678 83343940 -118984407 - L1MEc LINE L1 -4020 2376 2104 21 0 0 0 chr4 83344258 83344279 -118984068 + AT_rich Low_complexity Low_complexity 1 21 0 234 339 124 58 chr4 83344573 83344815 -118983532 - L2 LINE L2 -20 3252 2995 258 365 5 80 chr4 83344842 83345042 -118983305 + L2 LINE L2 2916 3100 -172 339 371 38 15 chr4 83345732 83345864 -118982483 + L2 LINE L2 3138 3272 0 189 0 0 0 chr4 83346932 83346953 -118981394 + (A)n Simple_repeat Simple_repeat 1 21 0 28 29 0 0 chr4 83347082 83347117 -118981230 + AT_rich Low_complexity Low_complexity 1 35 0 656 285 45 11 chr4 83348016 83348195 -118980152 + MER91A DNA MER1_type 1 185 -11 601 290 152 5 chr4 83348479 83348696 -118979651 - MIR SINE MIR -9 253 5 1417 182 38 0 chr4 83348775 83349011 -118979336 + AluJb SINE Alu 1 245 -67 3502 197 55 13 chr4 83349011 83349777 -118978570 + L1MC3 LINE L1 5612 6409 -1376 13072 139 12 6 chr4 83349778 83351840 -118976507 + Tigger1 DNA MER2_type 3 2077 -341 800 176 30 30 chr4 83351867 83352032 -118976315 - AluJo SINE Alu -133 179 15 2046 179 8 3 chr4 83352042 83352400 -118975947 + Tigger1 DNA MER2_type 2059 2418 0 1268 222 60 12 chr4 83352400 83352734 -118975613 + L1MC3 LINE L1 6407 6756 -1029 428 262 0 145 chr4 83352760 83352981 -118975366 + L1PA13 LINE L1 101 289 -6563 330 289 35 42 chr4 83353002 83353144 -118975203 + L1PA13 LINE L1 542 682 -6170 3177 255 36 19 chr4 83353469 83354506 -118973841 + L1PA13 LINE L1 1392 2458 -4404 2740 150 57 15 chr4 83354507 83355169 -118973178 + L1PA13 LINE L1 1 1114 -5749 1568 209 15 0 chr4 83355166 83355496 -118972851 + L1 LINE L1 2167 2501 -3645 * 462 70 0 0 chr4 83355490 83355547 -118972800 - L1P LINE L1 -1052 5094 5038 * 724 65 9 19 chr4 83355551 83355658 -118972689 + L1PB1 LINE L1 6045 6150 -1 11194 238 16 38 chr4 83355664 83356135 -118972212 + L1PA13 LINE L1 2439 2919 -3943 2254 82 0 55 chr4 83356135 83356464 -118971883 - AluY SINE Alu 0 311 1 6114 93 52 0 chr4 83356474 83357780 -118970567 - L1PA10 LINE L1 -3 6165 4834 11194 238 16 38 chr4 83357780 83360624 -118967723 + L1PA13 LINE L1 2928 5692 -1170 725 173 19 13 chr4 83360943 83361099 -118967248 + L1MD1 LINE L1 6085 6241 -1 248 307 94 55 chr4 83361135 83361262 -118967085 - L2 LINE L2 0 3313 3182 555 288 171 5 chr4 83361485 83361707 -118966640 - MIR SINE MIR -2 260 2 2491 209 58 35 chr4 83362091 83362834 -118965513 - L1M4c LINE L1 -2784 3598 2839 997 227 28 15 chr4 83363109 83363566 -118964781 - L1M4c LINE L1 -3583 2799 2153 1948 214 11 21 chr4 83363594 83364065 -118964282 + L1 LINE L1 3382 3847 -2299 * 3592 201 57 18 chr4 83364061 83364993 -118963354 + L1 LINE L1 4314 5281 -865 18395 198 18 12 chr4 83364995 83365798 -118962549 + L1P4 LINE L1 1049 1846 -4966 2547 99 14 16 chr4 83365798 83366163 -118962184 - THE1B LTR MaLR 0 364 1 18395 198 18 12 chr4 83366163 83367314 -118961033 + L1P4 LINE L1 1846 2989 -3823 243 0 0 0 chr4 83367314 83367341 -118961006 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 312 27 0 0 chr4 83367340 83367377 -118960970 + (GA)n Simple_repeat Simple_repeat 2 38 0 18395 198 18 12 chr4 83367341 83370477 -118957870 + L1P4 LINE L1 2989 6157 -655 2315 120 38 10 chr4 83420477 83420877 -118907470 + L1MA4A LINE L1 5891 6301 -2 2389 98 3 0 chr4 83420926 83421233 -118907114 - AluSp SINE Alu -5 308 1 475 271 65 0 chr4 83421339 83421509 -118906838 + L1M4 LINE L1 2373 2553 -3593 1434 103 0 0 chr4 83421510 83421713 -118906634 - AluSc SINE Alu 0 309 107 1499 211 135 54 chr4 83423361 83423953 -118904394 - MER50 LTR ERV1 -85 649 10 4139 87 15 3 chr4 83424268 83424854 -118903493 + SVA Other Other 2 594 -792 732 204 58 0 chr4 83425322 83425494 -118902853 + MER114 LTR ERV 3 184 -464 514 118 13 0 chr4 83426177 83426253 -118902094 + FRAM SINE Alu 73 149 -27 414 0 0 0 chr4 83426465 83426511 -118901836 + (TA)n Simple_repeat Simple_repeat 1 46 0 385 239 67 48 chr4 83427030 83427133 -118901214 - L1MEc LINE L1 -4050 2346 2246 2225 174 63 9 chr4 83427133 83427594 -118900753 - MER66B LTR ERV1 0 486 1 385 239 67 48 chr4 83427594 83427758 -118900589 - L1MEc LINE L1 -4150 2246 2074 474 221 77 82 chr4 83427904 83428112 -118900235 - L1MC5 LINE L1 -604 7357 7151 258 56 0 0 chr4 83428122 83428158 -118900189 + (TA)n Simple_repeat Simple_repeat 2 37 0 1698 156 48 4 chr4 83428158 83428427 -118899920 - AluSg SINE Alu -29 281 1 599 174 49 49 chr4 83428429 83428613 -118899734 - Charlie5 DNA MER1_type -72 2540 2357 435 306 128 43 chr4 83429470 83429705 -118898642 + MIR SINE MIR 2 256 -6 249 318 53 53 chr4 83431225 83431376 -118896971 - MIR SINE MIR -53 209 59 1973 152 0 62 chr4 83431670 83432038 -118896309 - MER7A DNA MER2_type -2 344 2 926 292 40 47 chr4 83432090 83432593 -118895754 - L2 LINE L2 -19 3294 2708 575 270 179 18 chr4 83432703 83433243 -118895104 - LTR50 LTR ERVL -56 739 16 286 242 40 101 chr4 83433265 83433364 -118894983 + MLT1G1 LTR MaLR 119 256 -339 1283 255 109 9 chr4 83434605 83435025 -118893322 - LTR40b LTR ERVL 0 462 1 377 193 40 127 chr4 83435314 83435464 -118892883 - MIR SINE MIR -44 218 82 2042 72 11 4 chr4 83435779 83436042 -118892305 + AluY SINE Alu 36 300 -11 2114 67 0 22 chr4 83437350 83437681 -118890666 - AluY SINE Alu 0 346 22 1997 141 3 0 chr4 83437688 83437987 -118890360 - AluSx SINE Alu -12 300 1 324 183 14 0 chr4 83437988 83438059 -118890288 + L1M4 LINE L1 2850 2921 -3225 31 0 0 0 chr4 83438918 83438949 -118889398 + AT_rich Low_complexity Low_complexity 1 31 0 186 167 0 0 chr4 83439118 83439154 -118889193 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 338 198 22 0 chr4 83439907 83439998 -118888349 + (TATG)n Simple_repeat Simple_repeat 2 94 0 26 74 0 0 chr4 83442543 83442597 -118885750 + AT_rich Low_complexity Low_complexity 1 54 0 197 246 62 31 chr4 83443135 83443200 -118885147 - MER5C DNA MER1_type -256 68 2 855 246 48 0 chr4 83443350 83443598 -118884749 - L1ME3A LINE L1 -157 6013 5754 348 207 157 25 chr4 83443601 83443722 -118884625 + MIR SINE MIR 116 252 -10 436 49 0 0 chr4 83443776 83443837 -118884510 + L1PA4 LINE L1 6094 6154 -1 21 0 0 0 chr4 83443838 83443859 -118884488 + AT_rich Low_complexity Low_complexity 1 21 0 192 125 0 0 chr4 83443861 83443893 -118884454 + (A)n Simple_repeat Simple_repeat 1 32 0 2184 296 147 15 chr4 83444717 83446187 -118882160 + L2 LINE L2 1651 3310 -3 2615 137 33 7 chr4 83446199 83446658 -118881689 - L1PB4 LINE L1 -13 6143 5673 21 0 0 0 chr4 83446843 83446864 -118881483 + AT_rich Low_complexity Low_complexity 1 21 0 5056 117 4 10 chr4 83446884 83447660 -118880687 - L1PA15 LINE L1 0 6165 5395 8155 190 60 25 chr4 83447895 83449584 -118878763 + MER52A LTR ERV1 1 1748 -7 199 244 0 0 chr4 83450483 83450524 -118877823 + L3b LINE CR1 1279 1319 -264 231 273 91 74 chr4 83451142 83451263 -118877084 + MLT1H1 LTR MaLR 220 342 -207 570 256 130 23 chr4 83451683 83451817 -118876530 + MLT1H1 LTR MaLR 299 417 -138 2611 101 0 3 chr4 83451817 83452173 -118876174 - THE1A LTR MaLR 0 355 1 570 256 130 23 chr4 83452173 83452253 -118876094 + MLT1H1 LTR MaLR 417 536 -19 649 304 25 15 chr4 83452595 83452796 -118875551 - MIR SINE MIR -56 206 4 296 279 0 0 chr4 83453322 83453390 -118874957 + (TGGA)n Simple_repeat Simple_repeat 3 70 0 2002 164 0 0 chr4 83453479 83453789 -118874558 + AluSx SINE Alu 1 310 -2 669 208 119 0 chr4 83454152 83454311 -118874036 - MER45A DNA AcHobo 0 178 1 387 60 0 0 chr4 83454407 83454457 -118873890 + (CAAAA)n Simple_repeat Simple_repeat 3 52 0 3047 235 33 29 chr4 83454551 83455555 -118872792 - L1ME3A LINE L1 -11 6159 5153 218 204 0 20 chr4 83456231 83456280 -118872067 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 1651 132 24 36 chr4 83456435 83456578 -118871769 - L1M1 LINE L1 -700 5603 5460 2381 158 14 39 chr4 83456578 83457015 -118871332 + MSTB LTR MaLR 1 426 0 1651 132 24 36 chr4 83457015 83457205 -118871142 - L1M1 LINE L1 -843 5460 5274 1343 195 28 3 chr4 83457201 83457488 -118870859 - L1M1 LINE L1 -2090 4056 3763 * 254 137 53 23 chr4 83457488 83457619 -118870728 - HERV17 LTR ERV1 -7779 847 713 726 150 0 0 chr4 83457630 83457783 -118870564 + CT-rich Low_complexity Low_complexity 2 154 0 549 187 0 0 chr4 83457803 83457942 -118870405 + CT-rich Low_complexity Low_complexity 2 140 0 279 182 0 0 chr4 83457994 83458071 -118870276 + CT-rich Low_complexity Low_complexity 2 78 0 801 150 0 0 chr4 83458072 83458252 -118870095 + (TC)n Simple_repeat Simple_repeat 1 180 0 1801 180 85 91 chr4 83458472 83458513 -118869834 - L1M1 LINE L1 -2372 3774 3734 2295 100 3 7 chr4 83458513 83458823 -118869524 - AluSp SINE Alu -4 309 1 1801 180 85 91 chr4 83458823 83459320 -118869027 - L1M1 LINE L1 -2412 3734 3239 1929 225 5 60 chr4 83459362 83459598 -118868749 - L1M1 LINE L1 -3330 2816 2568 325 113 12 100 chr4 83459598 83459678 -118868669 - L1PA16 LINE L1 -9 6157 6085 1929 225 5 60 chr4 83459678 83460037 -118868310 - L1M1 LINE L1 -3578 2568 2254 894 212 48 79 chr4 83460038 83460330 -118868017 + L1M1 LINE L1 15 297 -7268 * 1387 90 36 9 chr4 83460328 83460551 -118867796 + L1M1 LINE L1 3432 3660 -3905 * 9009 179 38 31 chr4 83460543 83460983 -118867364 + L1M1 LINE L1 4016 4452 -3113 2229 95 0 0 chr4 83460983 83461316 -118867031 + AluY SINE Alu 1 333 0 9009 179 38 31 chr4 83461316 83462383 -118865964 + L1M1 LINE L1 4452 5511 -2054 2379 123 34 14 chr4 83462383 83462740 -118865607 - THE1B LTR MaLR 0 364 1 11119 102 17 1 chr4 83462740 83464294 -118864053 - THE1B-int LTR MaLR 0 1580 1 2318 126 36 14 chr4 83464294 83464650 -118863697 - THE1B LTR MaLR 0 364 1 9009 179 38 31 chr4 83464650 83465397 -118862950 + L1M1 LINE L1 5510 6288 -1277 6482 95 30 14 chr4 83465526 83466593 -118861754 + SVA Other Other 432 1386 0 22 0 0 0 chr4 83466928 83466950 -118861397 + AT_rich Low_complexity Low_complexity 1 22 0 9810 208 65 37 chr4 83467749 83470035 -118858312 + L1PA13 LINE L1 1 2366 -4431 1740 248 99 24 chr4 83470040 83470625 -118857722 + L1PA12 LINE L1 4 632 -6949 1545 212 23 0 chr4 83470635 83470984 -118857363 + L1M1 LINE L1 6367 6723 -842 6586 128 16 33 chr4 83471096 83472935 -118855412 + L1MA2 LINE L1 4484 6302 -2 11166 194 17 58 chr4 83472985 83473027 -118855320 - L1M1 LINE L1 -3890 2958 2916 1800 147 29 0 chr4 83473027 83473333 -118855014 - AluY SINE Alu 0 314 1 11166 194 17 58 chr4 83473333 83474434 -118853913 - L1M1 LINE L1 -3932 2916 1770 2320 146 3 3 chr4 83474434 83474798 -118853549 + THE1B LTR MaLR 1 364 0 11166 194 17 58 chr4 83474798 83474864 -118853483 - L1M1 LINE L1 -5078 1770 1703 2295 93 6 10 chr4 83474864 83475175 -118853172 - AluY SINE Alu -1 310 1 11166 194 17 58 chr4 83475175 83476592 -118851755 - L1M1 LINE L1 -5145 1703 442 228 265 45 91 chr4 83477009 83477050 -118851297 + L1ME LINE L1 5677 5718 -452 1885 242 55 52 chr4 83477050 83477702 -118850645 + MLT1E1 LTR MaLR 1 654 0 228 265 45 91 chr4 83477702 83477924 -118850423 + L1ME LINE L1 5718 5928 -242 2544 42 3 10 chr4 83478955 83479263 -118849084 - AluY SINE Alu -5 306 1 464 275 50 107 chr4 83480199 83480377 -118847970 - MLT1J2 LTR MaLR -1 449 289 1486 198 128 13 chr4 83480377 83480832 -118847515 - Charlie4a DNA MER1_type 0 508 2 464 275 50 107 chr4 83480832 83480915 -118847432 - MLT1J2 LTR MaLR -161 289 203 394 216 21 21 chr4 83480959 83481056 -118847291 - MLT1J1 LTR MaLR -349 97 1 572 241 134 21 chr4 83481684 83481871 -118846476 - MIR SINE MIR -21 241 34 321 264 0 11 chr4 83481874 83481961 -118846386 + MIR SINE MIR 175 260 -2 1732 143 7 37 chr4 83483110 83483404 -118844943 + AluJo SINE Alu 5 289 -23 193 147 0 0 chr4 83483844 83483878 -118844469 + L2 LINE L2 3239 3272 0 573 229 49 0 chr4 83485257 83485401 -118842946 - MIR SINE MIR -12 250 100 429 248 150 13 chr4 83487069 83487222 -118841125 - MER5A DNA MER1_type -6 183 10 204 167 100 33 chr4 83487371 83487431 -118840916 - L2 LINE L2 -104 3209 3146 242 238 48 0 chr4 83487450 83487534 -118840813 + L1MC4 LINE L1 6615 6702 -1340 219 186 0 0 chr4 83487535 83487578 -118840769 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 225 225 150 0 chr4 83487578 83487658 -118840689 - L2 LINE L2 -311 3002 2911 697 204 0 0 chr4 83488795 83488947 -118839400 + L1MA6 LINE L1 6149 6300 0 289 291 0 13 chr4 83489111 83489190 -118839157 + CT-rich Low_complexity Low_complexity 2 79 0 459 287 100 45 chr4 83489823 83490133 -118838214 - L2 LINE L2 -84 3229 2903 251 119 24 0 chr4 83490365 83490407 -118837940 - MER116 DNA Mariner 0 80 38 4089 249 77 45 chr4 83490734 83492249 -118836098 + L1MA4A LINE L1 1 1563 -5646 3334 163 37 30 chr4 83492268 83493097 -118835250 + L1MA4A LINE L1 2533 3369 -3839 2528 215 22 0 chr4 83493104 83493653 -118834694 + L1MA4A LINE L1 3532 4092 -3116 * 5562 171 14 52 chr4 83493650 83494010 -118834337 + L1MA4A LINE L1 5320 5692 -1673 2052 139 3 0 chr4 83494010 83494320 -118834027 + AluSx SINE Alu 1 311 -1 5562 171 14 52 chr4 83494320 83496102 -118832245 + L1MA4A LINE L1 5692 7365 0 30 45 0 0 chr4 83498428 83498472 -118829875 + AT_rich Low_complexity Low_complexity 1 44 0 246 224 105 7 chr4 83498920 83499063 -118829284 - L1ME4a LINE L1 -165 5956 5800 761 188 0 0 chr4 83500284 83500412 -118827935 + FLAM_A SINE Alu 1 128 -5 225 286 14 0 chr4 83500449 83500519 -118827828 + MIR SINE MIR 184 254 -8 250 164 33 33 chr4 83500620 83500681 -118827666 + (CATA)n Simple_repeat Simple_repeat 2 62 0 449 295 72 81 chr4 83500689 83501104 -118827243 + HAL1b LINE L1 18 310 -1038 891 187 110 5 chr4 83501104 83501323 -118827024 - MLT1C LTR MaLR -225 242 1 596 177 27 81 chr4 83501323 83501470 -118826877 + MER92A LTR ERV1 301 397 -15 24 96 0 0 chr4 83501883 83501956 -118826391 + AT_rich Low_complexity Low_complexity 1 73 0 21 0 0 0 chr4 83502036 83502057 -118826290 + AT_rich Low_complexity Low_complexity 1 21 0 297 328 41 8 chr4 83502476 83502598 -118825749 + MIR SINE MIR 119 244 -18 30 45 0 0 chr4 83502894 83502938 -118825409 + AT_rich Low_complexity Low_complexity 1 44 0 204 97 0 0 chr4 83503177 83503208 -118825139 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 254 378 107 34 chr4 83503313 83503723 -118824624 - L2 LINE L2 -407 2907 2468 309 250 0 0 chr4 83504397 83504461 -118823886 + MLT1J LTR MaLR 110 173 -338 184 336 102 31 chr4 83504818 83504946 -118823401 - L2 LINE L2 -10 3303 3167 587 253 129 18 chr4 83505667 83505892 -118822455 + L2 LINE L2 1248 1497 -1817 476 248 0 0 chr4 83505895 83505996 -118822351 - AluJ/FLAM SINE Alu -211 101 1 225 267 17 0 chr4 83506014 83506074 -118822273 + L2 LINE L2 1506 1566 -1748 582 199 21 43 chr4 83506080 83506221 -118822126 + MER5C DNA MER1_type 12 149 -175 3401 288 72 27 chr4 83506246 83507703 -118820644 + L2 LINE L2 1588 3110 -203 466 138 12 12 chr4 83507742 83507822 -118820525 - FLAM SINE Alu -18 125 46 308 298 146 28 chr4 83509106 83509284 -118819063 + L3b LINE CR1 1203 1401 -182 323 202 36 0 chr4 83510066 83510150 -118818197 + L1MC4 LINE L1 7955 8041 -1 7876 11 0 1 chr4 83510656 83512236 -118816111 - L1PA2 LINE L1 -4 6151 4573 9893 25 0 0 chr4 83512236 83513399 -118814948 + L1PA2 LINE L1 3396 4558 -1588 366 239 22 0 chr4 83513933 83514067 -118814280 + (TA)n Simple_repeat Simple_repeat 1 137 0 317 245 218 20 chr4 83514720 83514867 -118813480 - MLT1H1 LTR MaLR -49 518 306 560 281 46 28 chr4 83514921 83515180 -118813167 - MLT1H1 LTR MaLR -297 258 32 693 254 117 19 chr4 83516493 83516698 -118811649 + MIR SINE MIR 38 262 0 256 330 40 0 chr4 83516702 83516802 -118811545 - L2 LINE L2 -21 3292 3189 4806 243 12 6 chr4 83518328 83519415 -118808932 + HERVI LTR ERV1 6675 7767 -18 1643 181 170 29 chr4 83519435 83519882 -118808465 + LTR10A LTR ERV1 1 510 -99 183 399 27 33 chr4 83520422 83520605 -118807742 + L2 LINE L2 2923 3104 -168 194 128 26 0 chr4 83520605 83520644 -118807703 + (CATAT)n Simple_repeat Simple_repeat 3 42 0 1163 207 117 52 chr4 83520752 83521095 -118807252 - MLT1A1 LTR MaLR 0 365 1 763 256 88 0 chr4 83521162 83521377 -118806970 - MIR SINE MIR -25 237 4 320 262 34 40 chr4 83521377 83521518 -118806829 - L2 LINE L2 -48 3265 3126 431 278 179 22 chr4 83522969 83523192 -118805155 - MIR SINE MIR -3 259 2 642 305 124 8 chr4 83523395 83523654 -118804693 - L2 LINE L2 0 3313 3025 206 254 60 30 chr4 83523673 83523702 -118804645 + L2 LINE L2 3245 3272 -41 1168 58 121 17 chr4 83523702 83523876 -118804471 + MER107 DNA MER1_type 4 195 -2 206 254 60 30 chr4 83523876 83523913 -118804434 + L2 LINE L2 3272 3313 0 495 309 39 40 chr4 83524001 83524245 -118804102 - L2 LINE L2 -298 3015 2774 25 0 0 0 chr4 83524565 83524590 -118803757 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr4 83524679 83524699 -118803648 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 2857 12 0 6 chr4 83525289 83525609 -118802738 + AluYb8 SINE Alu 1 318 0 258 81 0 0 chr4 83528379 83528416 -118799931 + (GA)n Simple_repeat Simple_repeat 1 37 0 29 0 0 0 chr4 83529411 83529440 -118798907 + AT_rich Low_complexity Low_complexity 1 29 0 654 232 269 7 chr4 83529504 83529909 -118798438 - L1ME4a LINE L1 -82 6039 5529 584 266 43 74 chr4 83530139 83530395 -118797952 - MIR SINE MIR -3 259 12 1742 168 3 13 chr4 83531881 83532185 -118796162 + AluJo SINE Alu 1 301 -11 1748 123 19 0 chr4 83532188 83532448 -118795899 + AluSp SINE Alu 45 309 -4 625 281 98 13 chr4 83534101 83534336 -118794011 - MIR SINE MIR -1 261 7 1744 186 89 19 chr4 83534477 83534847 -118793500 + MSTD LTR MaLR 1 396 0 205 192 19 19 chr4 83535644 83535696 -118792651 + L2 LINE L2 3262 3313 0 23 0 0 0 chr4 83536721 83536744 -118791603 + AT_rich Low_complexity Low_complexity 1 23 0 656 269 107 8 chr4 83537002 83537236 -118791111 - MIR SINE MIR -3 259 3 232 324 14 0 chr4 83537248 83537322 -118791025 + L2 LINE L2 3226 3300 -13 6866 203 48 44 chr4 83538037 83539730 -118788617 + MER52A LTR ERV1 55 1755 0 277 374 19 0 chr4 83540024 83540131 -118788216 - MIR3 SINE MIR -2 206 98 231 355 83 47 chr4 83541361 83541530 -118786817 - L2 LINE L2 -12 3260 3086 503 347 70 4 chr4 83541833 83542075 -118786272 + MIR SINE MIR 5 262 0 186 222 33 0 chr4 83543426 83543516 -118784831 + (TA)n Simple_repeat Simple_repeat 2 94 0 375 289 118 46 chr4 83543547 83543827 -118784520 + MLT1J LTR MaLR 175 474 -37 2147 162 16 10 chr4 83545393 83545781 -118782566 - MLT1B LTR MaLR 0 390 1 2556 68 0 0 chr4 83548874 83549185 -118779162 - AluY SINE Alu 0 311 1 711 317 67 27 chr4 83550582 83551033 -118777314 + Tigger8 DNA MER2_type 25 493 -173 959 254 50 14 chr4 83551045 83551324 -118777023 + Charlie2 DNA MER1_type 49 337 -2525 2266 99 20 7 chr4 83551539 83551843 -118776504 + AluSx SINE Alu 1 308 -4 640 181 0 9 chr4 83551843 83551959 -118776388 - FLAM_A SINE Alu -18 115 1 276 301 173 43 chr4 83552438 83552608 -118775739 - MIR SINE MIR -63 145 9 21 0 0 0 chr4 83553329 83553350 -118774997 + AT_rich Low_complexity Low_complexity 1 21 0 290 115 279 0 chr4 83553357 83553418 -118774929 - L1MC2 LINE L1 -25 6319 6242 378 258 159 18 chr4 83553564 83553727 -118774620 - MER5A DNA MER1_type 0 189 4 207 0 0 0 chr4 83553811 83553834 -118774513 + (A)n Simple_repeat Simple_repeat 1 23 0 2207 78 7 39 chr4 83554506 83554638 -118773709 + AluSg SINE Alu 1 136 -174 2359 75 0 3 chr4 83554638 83554945 -118773402 + AluY SINE Alu 1 306 -5 2207 78 7 39 chr4 83554945 83555119 -118773228 + AluSg SINE Alu 136 297 -13 1548 189 107 126 chr4 83555159 83556047 -118772300 - L1MC5 LINE L1 -54 7907 7037 1212 221 69 61 chr4 83557337 83558500 -118769847 - L1ME3A LINE L1 -57 6113 4855 931 171 0 0 chr4 83558544 83558684 -118769663 + FRAM SINE Alu 1 137 -39 1673 192 7 16 chr4 83560780 83561087 -118767260 + AluJb SINE Alu 1 304 -8 3409 148 25 14 chr4 83561657 83562148 -118766199 + MER50 LTR ERV1 7 506 -228 4877 110 0 13 chr4 83562148 83562848 -118765499 - LTR8 LTR ERV1 0 691 1 3409 148 25 14 chr4 83562848 83562917 -118765430 + MER50 LTR ERV1 506 573 -161 973 132 0 0 chr4 83562917 83563053 -118765294 - AluSg/x SINE Alu -6 306 171 760 203 7 0 chr4 83563053 83563196 -118765151 + MER50 LTR ERV1 568 711 -23 2116 125 7 0 chr4 83563754 83564049 -118764298 + AluSx SINE Alu 1 297 -15 2292 136 68 24 chr4 83564409 83564702 -118763645 + MER65A LTR ERV1 1 320 -125 2046 104 0 4 chr4 83564702 83564971 -118763376 + AluSp SINE Alu 37 304 -9 2292 136 68 24 chr4 83564971 83565103 -118763244 + MER65A LTR ERV1 320 445 0 200 359 0 0 chr4 83565294 83565358 -118762989 + L2 LINE L2 2995 3058 -214 1105 256 142 7 chr4 83565956 83566366 -118761981 + LTR33A LTR ERVL 59 523 0 22 35 0 0 chr4 83566392 83566421 -118761926 + AT_rich Low_complexity Low_complexity 1 29 0 2295 94 7 0 chr4 83566841 83567139 -118761208 + AluSg SINE Alu 1 300 -10 226 370 65 13 chr4 83567164 83567318 -118761029 + MIR SINE MIR 47 208 -54 214 294 0 0 chr4 83568096 83568147 -118760200 + MIR3 SINE MIR 147 197 -11 1505 199 36 42 chr4 83568739 83569095 -118759252 - MLT1A1 LTR MaLR 0 365 12 27 0 0 0 chr4 83569771 83569798 -118758549 + AT_rich Low_complexity Low_complexity 1 27 0 1585 187 8 0 chr4 83569817 83570079 -118758268 - AluJo SINE Alu -37 275 12 331 276 163 0 chr4 83570820 83570943 -118757404 + MER5B DNA MER1_type 3 145 -33 308 275 11 55 chr4 83571282 83571373 -118756974 + L2 LINE L2 3186 3272 0 4598 167 24 28 chr4 83572957 83573932 -118754415 - L1MB4 LINE L1 -1 6179 5194 248 298 92 28 chr4 83574652 83574793 -118753554 + MIR3 SINE MIR 48 197 -11 1000 203 215 21 chr4 83574799 83575129 -118753218 + MSTD LTR MaLR 1 394 -2 459 39 0 39 chr4 83576714 83576791 -118751556 + (GA)n Simple_repeat Simple_repeat 1 74 0 319 325 9 9 chr4 83577970 83578084 -118750263 + CT-rich Low_complexity Low_complexity 1 114 0 26 30 0 0 chr4 83578298 83578331 -118750016 + AT_rich Low_complexity Low_complexity 1 33 0 1975 219 89 61 chr4 83578848 83579566 -118748781 - L1ME1 LINE L1 -4 6231 5494 * 4359 246 81 39 chr4 83579554 83581599 -118746748 - L1ME1 LINE L1 -2251 3964 1850 21 0 0 0 chr4 83584458 83584479 -118743868 + AT_rich Low_complexity Low_complexity 1 21 0 3644 257 91 29 chr4 83584481 83586117 -118742230 - L1ME1 LINE L1 -4555 1660 36 287 271 16 0 chr4 83586589 83586718 -118741629 + L1PBa LINE L1 1615 1745 -5118 4381 203 15 15 chr4 83586726 83587922 -118740425 + L1PBa LINE L1 2776 3972 -2890 5296 164 17 17 chr4 83588163 83589196 -118739151 - L1MA8 LINE L1 -5 6286 5254 2668 205 110 32 chr4 83589322 83589845 -118738502 + L1 LINE L1 4799 5417 -1445 1906 149 0 10 chr4 83589845 83590133 -118738214 + AluSx SINE Alu 1 285 -27 2668 205 110 32 chr4 83590133 83590472 -118737875 + L1 LINE L1 5417 5728 -1134 485 338 88 60 chr4 83590960 83592145 -118736202 - L2 LINE L2 -281 2991 1776 1594 243 57 3 chr4 83592286 83592673 -118735674 + MER67D LTR ERV1 60 467 -47 1108 197 64 30 chr4 83592673 83592937 -118735410 - AluJb SINE Alu -11 301 29 1960 306 55 11 chr4 83592994 83593746 -118734601 - L2 LINE L2 -823 2491 1707 501 190 7 15 chr4 83593747 83593884 -118734463 + CT-rich Low_complexity Low_complexity 3 138 0 1567 107 16 0 chr4 83593889 83594132 -118734215 - LTR7 LTR ERV1 -2 448 202 2247 282 75 32 chr4 83594543 83594589 -118733758 - L2 LINE L2 -518 2796 2753 1934 169 52 6 chr4 83594589 83594938 -118733409 - MLT1A1 LTR MaLR 0 365 1 2247 282 75 32 chr4 83594938 83595709 -118732638 - L2 LINE L2 -561 2753 1944 31 68 0 0 chr4 83595941 83596000 -118732347 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr4 83596320 83596341 -118732006 + AT_rich Low_complexity Low_complexity 1 21 0 284 249 17 39 chr4 83596466 83596647 -118731700 + (TGGG)n Simple_repeat Simple_repeat 3 179 0 285 184 0 0 chr4 83597056 83597105 -118731242 - L2 LINE L2 -2 3311 3263 220 307 68 11 chr4 83597218 83597306 -118731041 - MIR SINE MIR -63 145 53 1074 53 0 0 chr4 83598323 83598454 -118729893 + AluY SINE Alu 170 300 -11 811 276 30 0 chr4 83598562 83598765 -118729582 - MIR SINE MIR -2 260 52 1361 272 154 7 chr4 83598915 83599511 -118728836 + L1ME LINE L1 4495 5178 -968 398 236 116 60 chr4 83599540 83599739 -118728608 + L1ME LINE L1 5254 5463 -707 209 205 60 33 chr4 83600141 83600292 -118728055 + (TTGTG)n Simple_repeat Simple_repeat 4 158 0 * 326 161 43 62 chr4 83600182 83600344 -118728003 + T-rich Low_complexity Low_complexity 4 162 0 934 251 53 3 chr4 83600492 83600831 -118727516 + L1M4 LINE L1 4337 4692 -1454 4401 205 52 30 chr4 83600856 83601391 -118726956 - L1MA10 LINE L1 -19 6315 5793 342 0 0 0 chr4 83601391 83601429 -118726918 + (CA)n Simple_repeat Simple_repeat 2 39 0 4401 205 52 30 chr4 83601429 83602097 -118726250 - L1MA10 LINE L1 -541 5793 5068 1303 55 0 0 chr4 83602097 83602250 -118726097 + L1PA4 LINE L1 5986 6150 -5 4401 205 52 30 chr4 83602250 83602404 -118725943 - L1MA10 LINE L1 -1266 5068 4919 622 276 56 77 chr4 83602378 83602865 -118725482 - L1M4 LINE L1 -991 5155 4676 * 1609 149 4 19 chr4 83602865 83603153 -118725194 - AluSx SINE Alu 0 313 30 622 276 56 77 chr4 83603153 83603184 -118725163 - L1M4 LINE L1 -1470 4676 4646 210 316 0 0 chr4 83603286 83603362 -118724985 + T-rich Low_complexity Low_complexity 1 76 0 255 110 14 41 chr4 83603369 83603442 -118724905 + (TTTTTG)n Simple_repeat Simple_repeat 4 74 0 236 245 45 26 chr4 83603452 83603607 -118724740 + (TCTG)n Simple_repeat Simple_repeat 4 161 0 * 362 236 17 34 chr4 83603506 83603785 -118724562 + T-rich Low_complexity Low_complexity 1 274 0 806 283 61 24 chr4 83604885 83605132 -118723215 + MIR SINE MIR 7 262 0 2395 57 9 0 chr4 83605168 83605483 -118722864 + AluYb8 SINE Alu 1 318 0 434 319 86 19 chr4 83605524 83605781 -118722566 - LTR16A LTR ERVL 0 450 177 1217 313 45 19 chr4 83605817 83606303 -118722044 - MER115 DNA AcHobo -55 638 140 6051 245 28 8 chr4 83606618 83608688 -118719659 + L1M4c LINE L1 2030 4146 -2236 2502 174 19 25 chr4 83608686 83609210 -118719137 + L1PB1 LINE L1 4610 5130 -1016 * 3876 123 19 17 chr4 83609586 83610228 -118718119 + L1PB1 LINE L1 5493 6135 -16 314 212 53 71 chr4 83610252 83610365 -118717982 - L2 LINE L2 -16 3297 3187 1198 246 86 8 chr4 83610423 83610784 -118717563 - MLT1C LTR MaLR -74 393 5 456 289 23 69 chr4 83610800 83611105 -118717242 + L1MB7 LINE L1 3306 3596 -2786 1124 288 122 14 chr4 83611133 83611790 -118716557 + L1MB7 LINE L1 3687 4414 -1968 1855 161 0 0 chr4 83611816 83612096 -118716251 - AluSx SINE Alu -16 296 17 302 248 26 34 chr4 83612096 83612202 -118716145 + L1MB7 LINE L1 4633 4739 -1643 2151 247 22 9 chr4 83612204 83612759 -118715588 + L1MB7 LINE L1 5851 6412 -8 22 35 0 0 chr4 83612759 83612788 -118715559 + AT_rich Low_complexity Low_complexity 1 29 0 497 363 83 4 chr4 83613226 83613466 -118714881 - MIR SINE MIR -3 259 1 202 313 110 45 chr4 83613466 83613816 -118714531 - L2 LINE L2 -1662 1652 1280 1473 200 4 11 chr4 83613919 83614179 -118714168 + AluJb SINE Alu 32 289 -23 189 0 0 0 chr4 83614181 83614202 -118714145 + (TAAG)n Simple_repeat Simple_repeat 2 22 0 1371 201 97 0 chr4 83614203 83614511 -118713836 - MER58B DNA MER1_type -3 338 1 392 269 90 8 chr4 83614620 83614754 -118713593 + LTR33A LTR ERVL 1 145 -378 1737 265 113 25 chr4 83614765 83615479 -118712868 + LTR50 LTR ERVL 8 784 -11 551 280 75 67 chr4 83615492 83615853 -118712494 + LTR33A LTR ERVL 160 523 0 181 98 49 0 chr4 83617232 83617273 -118711074 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 330 422 19 9 chr4 83618426 83618746 -118709601 - MERVL LTR ERVL -2217 3268 2946 791 304 101 26 chr4 83618976 83619400 -118708947 - LTR16C LTR ERVL 0 491 36 330 331 111 47 chr4 83619838 83620325 -118708022 + L2 LINE L2 1384 1901 -1413 1216 272 122 26 chr4 83620325 83620751 -118707596 + MLT1E LTR MaLR 1 467 -126 1225 161 9 0 chr4 83620865 83621076 -118707271 - Charlie1 DNA MER1_type -404 2357 2145 473 165 39 29 chr4 83621100 83621203 -118707144 + MLT1E LTR MaLR 464 567 0 312 353 141 20 chr4 83621646 83622000 -118706347 + L2 LINE L2 2489 2885 -429 235 211 0 0 chr4 83622760 83622812 -118705535 - L1ME3 LINE L1 -17 6145 6094 2088 128 35 29 chr4 83623269 83623613 -118704734 + THE1B LTR MaLR 19 364 0 1754 285 73 4 chr4 83623613 83624135 -118704212 + MER119 DNA MER1_type 26 583 0 960 292 52 34 chr4 83624142 83624529 -118703818 + L2 LINE L2 2916 3309 -4 669 316 117 47 chr4 83625462 83625889 -118702458 + LTR33A LTR ERVL 67 523 0 1260 199 23 4 chr4 83625906 83626168 -118702179 + MLT1B LTR MaLR 1 267 -123 2247 236 14 0 chr4 83626486 83626999 -118701348 + L1P LINE L1 3590 4109 -2037 3321 167 14 43 chr4 83627100 83627936 -118700411 - L1 LINE L1 -1005 5141 4255 23 0 0 0 chr4 83627936 83627959 -118700388 + AT_rich Low_complexity Low_complexity 1 23 0 2631 213 55 18 chr4 83627959 83629059 -118699288 - L1PA15 LINE L1 -263 5902 2445 700 203 34 7 chr4 83629065 83629213 -118699134 + MER3 DNA MER1_type 57 208 -1 304 250 0 0 chr4 83629777 83629837 -118698510 + MER94 DNA DNA 72 131 -3 1965 134 77 8 chr4 83630600 83630951 -118697396 + THE1C LTR MaLR 1 375 0 21 57 0 0 chr4 83631267 83631302 -118697045 + AT_rich Low_complexity Low_complexity 1 35 0 22 99 0 0 chr4 83631440 83631511 -118696836 + AT_rich Low_complexity Low_complexity 1 71 0 556 266 31 39 chr4 83632146 83632375 -118695972 - MLT2A1 LTR ERVL 0 444 218 22 35 0 0 chr4 83633120 83633149 -118695198 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr4 83634058 83634078 -118694269 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 385 324 76 0 chr4 83634643 83634788 -118693559 + L2 LINE L2 3158 3313 0 2106 128 3 3 chr4 83634903 83635215 -118693132 - AluSx SINE Alu 0 312 1 243 0 0 0 chr4 83636258 83636285 -118692062 + (TG)n Simple_repeat Simple_repeat 2 28 0 309 309 100 0 chr4 83637886 83637996 -118690351 + MIR3 SINE MIR 51 171 -37 265 294 141 0 chr4 83638721 83638813 -118689534 + L2 LINE L2 3193 3297 -16 2070 99 3 48 chr4 83639379 83639693 -118688654 + AluSg SINE Alu 1 300 -10 409 299 71 0 chr4 83640827 83640954 -118687393 - L2 LINE L2 -1 3271 3136 385 115 0 0 chr4 83641096 83641157 -118687190 - L1PA16 LINE L1 -8 6158 6098 2736 116 0 21 chr4 83641441 83641865 -118686482 - MLT2A1 LTR ERVL -29 415 1 1550 170 10 27 chr4 83642269 83642569 -118685778 - AluJo SINE Alu -17 295 1 1464 186 75 133 chr4 83644989 83645532 -118682815 + MLT2B1 LTR ERVL 1 512 -8 542 208 25 0 chr4 83645609 83645729 -118682618 - MER67D LTR ERV1 -4 510 388 225 309 18 0 chr4 83646192 83646247 -118682100 - L2 LINE L2 -79 3193 3138 32 26 0 0 chr4 83646315 83646354 -118681993 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr4 83647411 83647433 -118680914 + AT_rich Low_complexity Low_complexity 1 22 0 286 311 0 47 chr4 83649032 83649138 -118679209 - L2 LINE L2 -254 3059 2959 188 234 0 64 chr4 83649279 83649326 -118679021 + L2 LINE L2 3220 3263 -9 382 327 160 0 chr4 83649607 83649763 -118678584 + MER5A DNA MER1_type 9 189 0 200 111 28 0 chr4 83649896 83649932 -118678415 + (CAA)n Simple_repeat Simple_repeat 2 38 0 464 172 32 0 chr4 83649994 83650087 -118678260 + MER53 DNA DNA 94 189 0 277 320 0 0 chr4 83651763 83651838 -118676509 - MIR SINE MIR -155 107 33 23 54 0 0 chr4 83652012 83652049 -118676298 + AT_rich Low_complexity Low_complexity 1 37 0 1709 126 181 0 chr4 83653054 83653363 -118674984 + MER47A DNA MER2_type 2 366 0 205 318 91 0 chr4 83654292 83654358 -118673989 - L2 LINE L2 0 3272 3201 21 82 0 0 chr4 83656018 83656067 -118672280 + AT_rich Low_complexity Low_complexity 1 49 0 25 75 0 0 chr4 83656276 83656329 -118672018 + AT_rich Low_complexity Low_complexity 1 53 0 331 275 17 17 chr4 83656510 83656630 -118671717 + MER103 DNA DNA 1 120 -46 382 295 70 26 chr4 83656685 83656841 -118671506 - MIR3 SINE MIR -45 163 1 323 310 14 7 chr4 83658298 83658443 -118669904 + CT-rich Low_complexity Low_complexity 1 146 0 745 296 62 75 chr4 83658667 83659268 -118669079 + L1MC4a LINE L1 5318 5910 -1898 22 35 0 0 chr4 83659277 83659306 -118669041 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr4 83659423 83659459 -118668888 + AT_rich Low_complexity Low_complexity 1 36 0 42 86 0 0 chr4 83659472 83659577 -118668770 + AT_rich Low_complexity Low_complexity 1 105 0 2248 170 25 23 chr4 83660672 83661019 -118667328 - L1MB3 LINE L1 -4 6179 5829 2087 110 16 7 chr4 83661019 83661327 -118667020 - AluSx SINE Alu -1 311 1 2248 170 25 23 chr4 83661327 83661461 -118666886 - L1MB3 LINE L1 -354 5829 5697 283 375 0 8 chr4 83662772 83662892 -118665455 + MIR3 SINE MIR 85 203 -5 211 167 0 0 chr4 83662886 83662922 -118665425 + MIR SINE MIR 109 144 -118 * 268 333 35 9 chr4 83664947 83665061 -118663286 + L2 LINE L2 3192 3308 -5 22 0 0 0 chr4 83665158 83665180 -118663167 + AT_rich Low_complexity Low_complexity 1 22 0 1798 153 10 14 chr4 83666640 83666934 -118661413 + AluSq SINE Alu 3 295 -18 822 226 106 9 chr4 83667035 83667261 -118661086 + MLT1C LTR MaLR 146 393 -74 315 212 53 71 chr4 83667319 83667432 -118660915 + L2 LINE L2 3187 3297 -16 6031 114 12 7 chr4 83667456 83668472 -118659875 - L1PB1 LINE L1 -16 6135 5113 10166 205 7 5 chr4 83668480 83671792 -118656555 - L1PBa LINE L1 -743 6119 2802 203 56 56 0 chr4 83671792 83671828 -118656519 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 9603 129 40 19 chr4 83671831 83673452 -118654895 - L1PBa LINE L1 -5115 1748 94 2079 130 3 7 chr4 83673799 83674107 -118654240 + MLT2A2 LTR ERVL 2 308 -145 1312 68 0 0 chr4 83674139 83674301 -118654046 + MLT2A2 LTR ERVL 292 453 0 437 344 65 41 chr4 83674540 83674880 -118653467 - HAL1b LINE L1 -613 735 388 229 250 0 0 chr4 83674914 83674962 -118653385 + MER34C LTR ERV1 36 83 -502 27 0 0 0 chr4 83674963 83674990 -118653357 + AT_rich Low_complexity Low_complexity 1 27 0 255 212 26 115 chr4 83675007 83675120 -118653227 + MER34 LTR ERV1 450 582 -3 497 191 11 0 chr4 83675473 83675562 -118652785 - Tigger5 DNA MER2_type 0 2323 2234 331 167 0 0 chr4 83675569 83675623 -118652724 - Tigger5 DNA MER2_type -2268 55 2 393 22 0 0 chr4 83675976 83676022 -118652325 + (GA)n Simple_repeat Simple_repeat 1 46 0 946 176 0 0 chr4 83676889 83677059 -118651288 - MER2 DNA MER2_type -135 210 41 22 35 0 0 chr4 83677343 83677372 -118650975 + AT_rich Low_complexity Low_complexity 1 29 0 202 150 0 25 chr4 83678182 83678222 -118650125 + (TTA)n Simple_repeat Simple_repeat 1 39 0 1471 206 69 26 chr4 83678508 83678858 -118649489 - MLT1A1 LTR MaLR 0 365 1 21 57 0 0 chr4 83679576 83679611 -118648736 + AT_rich Low_complexity Low_complexity 1 35 0 4512 236 56 44 chr4 83679847 83681694 -118646653 + L1MD1 LINE L1 41 2000 -4540 255 61 0 0 chr4 83681695 83681728 -118646619 + (CAAT)n Simple_repeat Simple_repeat 2 34 0 1181 213 14 37 chr4 83681764 83682149 -118646198 + L1MD1 LINE L1 2323 2686 -3854 1994 145 85 15 chr4 83682149 83682549 -118645798 + MSTA LTR MaLR 1 428 0 1181 213 14 37 chr4 83682549 83682747 -118645600 + L1MD1 LINE L1 2686 2887 -3653 * 4714 252 71 45 chr4 83682741 83684895 -118643452 + L1MD1 LINE L1 4405 6619 -17 2654 71 17 0 chr4 83686668 83687074 -118641273 - L1PA6 LINE L1 -4 6150 5664 3041 240 24 32 chr4 83687601 83688908 -118639439 - L1ME1 LINE L1 -5 6161 4873 349 279 51 74 chr4 83689312 83689527 -118638820 + LTR16C LTR ERVL 282 491 0 1329 248 124 34 chr4 83690807 83691307 -118637040 - MLT1H LTR MaLR 0 549 5 814 228 94 5 chr4 83691723 83691925 -118636422 + MIR SINE MIR 30 249 -13 23 0 0 0 chr4 83692112 83692135 -118636212 + AT_rich Low_complexity Low_complexity 1 23 0 187 324 40 14 chr4 83692139 83692213 -118636134 - L2 LINE L2 -11 3261 3186 273 57 0 0 chr4 83693462 83693497 -118634850 + (TA)n Simple_repeat Simple_repeat 2 36 0 1927 124 10 3 chr4 83693497 83693787 -118634560 - AluSc SINE Alu -17 292 1 22 35 0 0 chr4 83693950 83693979 -118634368 + AT_rich Low_complexity Low_complexity 1 29 0 180 111 0 0 chr4 83694203 83694230 -118634117 + (GA)n Simple_repeat Simple_repeat 1 27 0 459 0 0 0 chr4 83695178 83695229 -118633118 + (CA)n Simple_repeat Simple_repeat 2 52 0 558 0 0 0 chr4 83695401 83695463 -118632884 + (CA)n Simple_repeat Simple_repeat 2 63 0 26 30 0 0 chr4 83697643 83697676 -118630671 + AT_rich Low_complexity Low_complexity 1 33 0 184 200 22 22 chr4 83697865 83697910 -118630437 + L2 LINE L2 3228 3272 0 11367 29 1 0 chr4 83698152 83700284 -118628063 - L1PA4 LINE L1 -3 6152 4034 14690 44 1 3 chr4 83700284 83702143 -118626204 + L1PA4 LINE L1 2187 4040 -2106 213 39 0 0 chr4 83703492 83703518 -118624829 + (TG)n Simple_repeat Simple_repeat 1 26 0 23 33 0 0 chr4 83705130 83705160 -118623187 + AT_rich Low_complexity Low_complexity 1 30 0 1653 196 23 39 chr4 83706033 83706400 -118621947 - MLT1A1 LTR MaLR -5 621 1 25 51 0 0 chr4 83706497 83706536 -118621811 + AT_rich Low_complexity Low_complexity 1 39 0 454 264 172 0 chr4 83706877 83707040 -118621307 + MIR SINE MIR 53 243 -19 22 0 0 0 chr4 83707141 83707163 -118621184 + AT_rich Low_complexity Low_complexity 1 22 0 188 320 0 0 chr4 83707446 83707496 -118620851 - L2 LINE L2 -65 3207 3158 24 32 0 0 chr4 83708947 83708978 -118619369 + AT_rich Low_complexity Low_complexity 1 31 0 28 71 0 0 chr4 83709840 83709896 -118618451 + AT_rich Low_complexity Low_complexity 1 56 0 297 326 111 47 chr4 83710500 83710987 -118617360 + L2 LINE L2 1662 2179 -1135 624 295 101 44 chr4 83711051 83711458 -118616889 - MLT1K LTR MaLR -4 584 155 203 162 0 0 chr4 83712398 83712435 -118615912 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 207 378 78 35 chr4 83713718 83714001 -118614346 - L2 LINE L2 -453 2861 2567 288 252 19 65 chr4 83714224 83714331 -118614016 + L2 LINE L2 3165 3266 -47 222 288 14 68 chr4 83714335 83714408 -118613939 + L2 LINE L2 3242 3310 -3 696 132 0 26 chr4 83714766 83714880 -118613467 + AluJb SINE Alu 190 300 -12 203 350 43 31 chr4 83714962 83715125 -118613222 + L2 LINE L2 3148 3312 -1 423 327 13 40 chr4 83715654 83715804 -118612543 + MER91A DNA MER1_type 20 165 -31 25 0 0 0 chr4 83716197 83716222 -118612125 + AT_rich Low_complexity Low_complexity 1 25 0 187 245 0 20 chr4 83716375 83716424 -118611923 + MIR SINE MIR 106 153 -109 213 174 71 45 chr4 83716581 83716736 -118611611 + (TTTAA)n Simple_repeat Simple_repeat 5 163 0 38 0 0 0 chr4 83716743 83716781 -118611566 + AT_rich Low_complexity Low_complexity 1 38 0 183 362 123 31 chr4 83717660 83717823 -118610524 + MIR SINE MIR 3 180 -82 333 309 24 16 chr4 83718156 83718282 -118610065 - MLT2E LTR ERVL -473 155 29 3514 132 6 2 chr4 83718362 83718886 -118609461 + MER1A DNA MER1_type 2 527 0 204 213 0 21 chr4 83719034 83719081 -118609266 + CT-rich Low_complexity Low_complexity 1 46 0 189 0 0 0 chr4 83719121 83719142 -118609205 + (TGAA)n Simple_repeat Simple_repeat 4 24 0 2625 42 0 0 chr4 83719428 83719739 -118608608 - AluY SINE Alu 0 311 1 24 77 0 0 chr4 83719823 83719875 -118608472 + AT_rich Low_complexity Low_complexity 1 52 0 1365 165 0 30 chr4 83719903 83720140 -118608207 - AluSx SINE Alu -82 230 1 584 283 112 58 chr4 83720484 83720911 -118607436 + MLT1J2 LTR MaLR 1 450 0 262 345 79 34 chr4 83721856 83722033 -118606314 + MLT1K LTR MaLR 154 338 -250 2897 228 72 22 chr4 83722309 83723095 -118605252 - L1ME1 LINE L1 -5 6161 5317 1899 164 3 10 chr4 83723095 83723400 -118604947 - AluJo SINE Alu -9 303 1 2897 228 72 22 chr4 83723400 83723486 -118604861 - L1ME1 LINE L1 -849 5317 5237 182 157 0 20 chr4 83723486 83723537 -118604810 + (TA)n Simple_repeat Simple_repeat 2 51 0 3870 216 93 44 chr4 83723662 83725161 -118603186 - L1MC1 LINE L1 -6 6721 5297 2355 82 13 0 chr4 83725161 83725465 -118602882 + AluSp SINE Alu 1 308 -5 3870 216 93 44 chr4 83725465 83725871 -118602476 - L1MC1 LINE L1 -1430 5297 3622 736 270 90 22 chr4 83725867 83726129 -118602218 - L1MC1 LINE L1 -4394 2146 1858 * 1765 144 18 64 chr4 83726129 83726456 -118601891 - AluJb SINE Alu 0 312 1 736 270 90 22 chr4 83726456 83726504 -118601843 - L1MC1 LINE L1 -4682 1858 1815 445 224 36 99 chr4 83726500 83726723 -118601624 - L1MC1 LINE L1 -5418 1125 917 * 316 308 60 0 chr4 83727047 83727164 -118601183 - L1MC1 LINE L1 -6391 149 26 311 162 176 0 chr4 83727213 83727287 -118601060 + L1M4 LINE L1 4310 4396 -1750 469 244 6 69 chr4 83727312 83727472 -118600875 + L2 LINE L2 3156 3305 -8 297 248 28 28 chr4 83727588 83727697 -118600650 + L1ME4a LINE L1 5966 6074 -47 593 229 39 56 chr4 83729750 83729929 -118598418 - L2 LINE L2 0 3313 3138 9340 225 27 14 chr4 83729930 83732344 -118596003 + L1PB4 LINE L1 2174 4620 -1526 3630 173 7 6 chr4 83732344 83733033 -118595314 + L1PB4 LINE L1 5465 6154 -2 9340 225 27 14 chr4 83733033 83733051 -118595296 + L1PB4 LINE L1 4620 4636 -1510 306 273 143 7 chr4 83733053 83733207 -118595140 - L2 LINE L2 -140 3173 2999 2029 219 54 0 chr4 83733239 83733682 -118594665 + MER67D LTR ERV1 1 467 -47 1108 197 64 30 chr4 83733682 83733946 -118594401 - AluJb SINE Alu -11 301 29 1960 306 55 11 chr4 83734003 83734755 -118593592 - L2 LINE L2 -823 2491 1707 522 182 0 0 chr4 83734755 83734865 -118593482 + CT-rich Low_complexity Low_complexity 2 111 0 3560 49 5 2 chr4 83734898 83735345 -118593002 - LTR7 LTR ERV1 -2 448 1 2543 76 45 13 chr4 83735345 83735725 -118592622 - HERVH LTR ERV1 0 7713 7322 1324 123 43 0 chr4 83735723 83735934 -118592413 - HERVH LTR ERV1 -1894 5819 5600 * 4134 149 9 6 chr4 83735935 83736594 -118591753 - HERVH LTR ERV1 -2564 5149 4489 3242 121 6 8 chr4 83736597 83737100 -118591247 - HERVH LTR ERV1 -3720 3993 3492 967 120 7 0 chr4 83737090 83737240 -118591107 - HERVH LTR ERV1 -4423 3290 3140 * 19939 88 30 19 chr4 83737226 83740186 -118588161 - HERVH LTR ERV1 -4721 2992 1 3432 62 0 7 chr4 83740188 83740638 -118587709 - LTR7 LTR ERV1 -2 448 2 347 339 143 18 chr4 83740646 83740767 -118587580 - L2 LINE L2 -1620 1694 1590 2099 116 10 3 chr4 83740767 83741059 -118587288 + AluSq SINE Alu 1 294 -19 347 339 143 18 chr4 83741059 83741279 -118587068 - L2 LINE L2 -1724 1590 1310 1086 308 53 29 chr4 83741279 83741731 -118586616 - L2 LINE L2 -2138 1176 714 676 267 21 88 chr4 83741737 83742067 -118586280 + L2 LINE L2 3005 3312 -1 * 955 327 68 10 chr4 83742060 83742455 -118585892 - L2 LINE L2 -2581 733 316 193 385 0 0 chr4 83742567 83742645 -118585702 - MIR SINE MIR -128 134 57 2005 184 38 28 chr4 83742768 83743313 -118585034 + MLT2A2 LTR ERVL 1 553 -1 21 36 0 0 chr4 83743817 83743845 -118584502 + AT_rich Low_complexity Low_complexity 1 28 0 872 344 28 0 chr4 83746379 83746699 -118581648 + MER102b DNA MER1_type 13 341 0 266 333 135 26 chr4 83748310 83748466 -118579881 - MER5A DNA MER1_type 0 189 17 349 258 21 21 chr4 83748697 83748790 -118579557 - MER81 DNA DNA 0 114 22 21 0 0 0 chr4 83748872 83748893 -118579454 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4 83749153 83749184 -118579163 + AT_rich Low_complexity Low_complexity 1 31 0 1551 185 29 4 chr4 83750274 83750555 -118577792 + AluJo SINE Alu 14 301 -11 21 36 0 0 chr4 83750989 83751017 -118577330 + AT_rich Low_complexity Low_complexity 1 28 0 2305 87 7 0 chr4 83751020 83751320 -118577027 - AluSp SINE Alu -11 302 1 848 210 40 40 chr4 83753297 83753497 -118574850 - MIR SINE MIR -44 218 19 2430 81 7 0 chr4 83753500 83753808 -118574539 + AluSp SINE Alu 3 312 -1 480 248 9 18 chr4 83754125 83754238 -118574109 - MER63 DNA MER1_type -258 802 691 523 241 84 58 chr4 83754466 83754657 -118573690 - MER117 DNA MER1_type 0 197 2 371 315 19 0 chr4 83755888 83755996 -118572351 + MIR SINE MIR 23 132 -130 1700 183 24 0 chr4 83758181 83758476 -118569871 + AluJb SINE Alu 1 302 -10 190 280 0 0 chr4 83759008 83759058 -118569289 - MIR SINE MIR -2 260 211 215 296 37 0 chr4 83761571 83761625 -118566722 + MIR SINE MIR 32 87 -175 593 290 52 36 chr4 83761719 83761971 -118566376 + MIR SINE MIR 1 256 -6 21 0 0 0 chr4 83763600 83763621 -118564726 + AT_rich Low_complexity Low_complexity 1 21 0 264 296 132 21 chr4 83763666 83763855 -118564492 + L2 LINE L2 2612 2821 -493 182 276 129 55 chr4 83764074 83764237 -118564110 + L2 LINE L2 3139 3313 0 994 188 61 0 chr4 83764392 83764589 -118563758 + L1PA16 LINE L1 5950 6158 -8 225 119 0 51 chr4 83764944 83765003 -118563344 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 255 304 73 50 chr4 83765937 83766283 -118562064 - MLT1L LTR MaLR -49 462 196 286 291 29 10 chr4 83766396 83766497 -118561850 + LTR33 LTR ERVL 11 113 -408 1120 288 25 51 chr4 83766497 83766945 -118561402 - LTR16A1 LTR ERVL -2 455 20 3561 226 59 33 chr4 83767072 83768322 -118560025 + Zaphod DNA AcHobo 2685 3967 -64 2944 46 0 8 chr4 83768328 83768694 -118559653 + L1PA5 LINE L1 5792 6154 0 26 0 0 0 chr4 83769330 83769356 -118558991 + AT_rich Low_complexity Low_complexity 1 26 0 217 404 68 0 chr4 83769590 83769751 -118558596 + MIR SINE MIR 6 177 -85 2883 159 29 2 chr4 83770405 83770919 -118557428 + L1PA16 LINE L1 5634 6161 -5 184 189 44 11 chr4 83770925 83771015 -118557332 + (TA)n Simple_repeat Simple_repeat 2 94 0 7766 30 0 8 chr4 83772854 83773758 -118554589 - MER11D LTR ERVK 0 897 1 207 0 0 0 chr4 83773891 83773914 -118554433 + (CAA)n Simple_repeat Simple_repeat 2 24 0 210 71 0 0 chr4 83774004 83774032 -118554315 + (A)n Simple_repeat Simple_repeat 1 28 0 197 273 0 18 chr4 83774497 83774552 -118553795 - L3 LINE CR1 -19 1558 1505 557 212 6 89 chr4 83776253 83776432 -118551915 - MER104 DNA Tc2 -16 164 1 224 311 59 50 chr4 83777838 83777957 -118550390 - L2 LINE L2 -494 2820 2701 717 304 55 45 chr4 83778331 83778620 -118549727 - MLT1H LTR MaLR -195 354 63 656 191 16 0 chr4 83778620 83778746 -118549601 + MLT2B2 LTR ERVL 6 133 -382 262 209 39 65 chr4 83779438 83779591 -118548756 + T-rich Low_complexity Low_complexity 1 149 0 487 217 35 49 chr4 83780304 83780447 -118547900 + MIR SINE MIR 55 195 -67 315 318 171 34 chr4 83780968 83781531 -118546816 + L2 LINE L2 2338 2977 -337 1506 225 32 27 chr4 83781597 83781970 -118546377 - MLT1B LTR MaLR -15 375 1 229 274 7 178 chr4 83782065 83782200 -118546147 + L2 LINE L2 3121 3232 -40 2595 151 24 7 chr4 83782393 83782816 -118545531 + MSTB1 LTR MaLR 3 432 0 316 328 0 41 chr4 83783940 83784062 -118544285 - MER91B DNA MER1_type -7 183 67 215 195 39 117 chr4 83785947 83786024 -118542323 - L2 LINE L2 -1 3312 3242 256 224 0 0 chr4 83786266 83786324 -118542023 - MLT1H1 LTR MaLR -16 539 482 2051 129 17 0 chr4 83786340 83786627 -118541720 - AluSx SINE Alu -20 292 1 332 258 118 0 chr4 83786870 83786963 -118541384 - MLT1I LTR MaLR -208 201 98 228 162 0 0 chr4 83786930 83786967 -118541380 - MLT1H LTR MaLR -387 162 126 * 5503 189 19 35 chr4 83788402 83790753 -118537594 - L1PA16 LINE L1 -2 6164 3829 263 220 25 25 chr4 83793136 83793254 -118535093 + CT-rich Low_complexity Low_complexity 2 119 0 1066 259 75 41 chr4 83793256 83793697 -118534650 + L1MC4a LINE L1 6544 6999 -809 786 286 23 4 chr4 83793702 83793961 -118534386 + L1MC4 LINE L1 7238 7501 -541 231 310 0 0 chr4 83794065 83794123 -118534224 + L2 LINE L2 3254 3311 -2 328 321 114 48 chr4 83795205 83795495 -118532852 + L2 LINE L2 2397 2705 -609 289 321 66 19 chr4 83795532 83795638 -118532709 + L2 LINE L2 3203 3313 0 266 365 109 19 chr4 83796049 83796205 -118532142 + L2 LINE L2 3101 3270 -2 21 0 0 0 chr4 83797457 83797478 -118530869 + AT_rich Low_complexity Low_complexity 1 21 0 1895 169 34 3 chr4 83799089 83799415 -118528932 - MER2 DNA MER2_type 0 345 10 24 0 0 0 chr4 83799445 83799469 -118528878 + AT_rich Low_complexity Low_complexity 1 24 0 1142 221 52 65 chr4 83799570 83800647 -118527700 - L1ME1 LINE L1 -2 6164 5127 226 324 176 20 chr4 83800846 83800948 -118527399 - L2 LINE L2 -4 3309 3192 1654 169 97 32 chr4 83801232 83801604 -118526743 - MSTD LTR MaLR 0 396 1 250 232 171 12 chr4 83803152 83803234 -118525113 - MIR SINE MIR -110 152 58 232 219 0 0 chr4 83803694 83803735 -118524612 + (CGTG)n Simple_repeat Simple_repeat 1 41 0 570 268 81 43 chr4 83804792 83805027 -118523320 - MIR SINE MIR 0 262 19 192 77 0 0 chr4 83805191 83805217 -118523130 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 203 393 76 0 chr4 83805411 83805556 -118522791 + MIR3 SINE MIR 43 198 -10 38 39 0 0 chr4 83805897 83805949 -118522398 + AT_rich Low_complexity Low_complexity 1 52 0 481 261 83 32 chr4 83807740 83807897 -118520450 - MIR SINE MIR 0 262 98 356 260 24 49 chr4 83808202 83808325 -118520022 + MIR3 SINE MIR 87 206 -2 2002 127 0 37 chr4 83808774 83809074 -118519273 + AluSx SINE Alu 2 290 -22 1395 153 58 11 chr4 83909660 83909934 -118418413 + L1MB4 LINE L1 5887 6173 -7 416 266 29 12 chr4 83909983 83910156 -118418191 + L1MDa LINE L1 2233 2408 -4132 330 183 110 0 chr4 83910146 83910228 -118418119 + L1M4 LINE L1 5423 5513 -665 * 293 156 0 0 chr4 83910230 83910275 -118418072 + L1M4 LINE L1 5582 5626 -558 * 755 264 72 34 chr4 83910272 83910817 -118417530 + L1MDa LINE L1 2449 2976 -3564 22 35 0 0 chr4 83911061 83911090 -118417257 + AT_rich Low_complexity Low_complexity 1 29 0 402 315 18 0 chr4 83911355 83911466 -118416881 - MIR SINE MIR -147 115 3 541 186 98 0 chr4 83913112 83913214 -118415133 - LTR16C LTR ERVL 0 491 380 335 41 20 0 chr4 83915247 83915296 -118413051 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 282 284 134 30 chr4 83915311 83915446 -118412901 + MIR SINE MIR 40 191 -66 979 160 64 0 chr4 83915581 83915769 -118412578 - L1PA16 LINE L1 -1 6165 5966 589 256 8 0 chr4 83917933 83918058 -118410289 - MER58B DNA MER1_type -6 335 210 382 103 141 0 chr4 83918158 83918236 -118410111 - L1P4 LINE L1 -714 5447 5359 1741 120 4 0 chr4 83918236 83918493 -118409854 - AluSx SINE Alu 0 307 50 1981 108 0 51 chr4 83918493 83918807 -118409540 - AluSc SINE Alu -10 299 1 424 150 0 0 chr4 83918807 83918867 -118409480 - AluSx SINE Alu -248 62 3 12217 152 8 12 chr4 83918868 83921017 -118407330 - L1P4 LINE L1 -815 5331 3191 454 289 78 17 chr4 83921118 83921298 -118407049 - HERV16 LTR ERVL -3870 1126 936 2281 107 0 3 chr4 83921361 83921661 -118406686 - AluSg SINE Alu -11 299 1 880 220 39 6 chr4 83921764 83921946 -118406401 + MER5A DNA MER1_type 1 188 -1 335 365 57 46 chr4 83921949 83922560 -118405787 - HERV16 LTR ERVL -4227 769 152 280 234 0 16 chr4 83922602 83922666 -118405681 - LTR16C LTR ERVL 0 491 429 326 278 69 72 chr4 83923577 83923883 -118404464 + L1MC4 LINE L1 6766 7070 -972 682 123 53 9 chr4 83924326 83924440 -118403907 + MLT1F LTR MaLR 424 542 0 23 54 0 0 chr4 83925223 83925260 -118403087 + AT_rich Low_complexity Low_complexity 1 37 0 2109 189 31 24 chr4 83925881 83926335 -118402012 + MSTB2 LTR MaLR 1 457 0 618 177 8 0 chr4 83926533 83926657 -118401690 - L1MA4 LINE L1 -11 6289 6165 239 271 77 35 chr4 83927393 83927563 -118400784 - LTR67 LTR ERVL -29 528 352 2932 85 20 5 chr4 83928398 83928796 -118399551 + MLT2A1 LTR ERVL 1 404 -40 879 186 40 25 chr4 83928829 83929028 -118399319 + Tigger7 DNA MER2_type 2384 2585 -2 525 304 32 61 chr4 83929179 83929426 -118398921 - LTR33 LTR ERVL -281 240 1 1354 242 0 17 chr4 83930032 83930329 -118398018 + AluJo SINE Alu 1 292 -20 1352 311 55 13 chr4 83930570 83931042 -118397305 + L1MB7 LINE L1 5 496 -6363 1682 195 69 97 chr4 83931042 83931744 -118396603 + LTR8A LTR ERV1 1 689 -2 2761 244 53 76 chr4 83931748 83932268 -118396079 + L1MB7 LINE L1 494 983 -5876 2398 89 0 0 chr4 83932268 83932570 -118395777 - AluSx SINE Alu -10 302 1 2761 244 53 76 chr4 83932570 83933039 -118395308 + L1MB7 LINE L1 983 1461 -5398 611 219 11 27 chr4 83933042 83933181 -118395166 + L1MB7 LINE L1 2971 3108 -3849 1834 183 3 0 chr4 83933181 83933476 -118394871 + AluSx SINE Alu 3 298 -14 611 219 11 27 chr4 83933476 83933523 -118394824 + L1MB7 LINE L1 3108 3154 -3803 * 2829 242 74 5 chr4 83933516 83934028 -118394319 + L1MB7 LINE L1 5080 5555 -1440 1366 206 79 25 chr4 83934028 83934396 -118393951 - MLT1B LTR MaLR -2 388 1 2829 242 74 5 chr4 83934396 83935293 -118393054 + L1MB7 LINE L1 5555 6700 -295 540 113 0 0 chr4 83935622 83935702 -118392645 - MADE1 DNA Mariner 0 80 1 219 85 64 0 chr4 83936020 83936067 -118392280 + (TG)n Simple_repeat Simple_repeat 1 50 0 232 250 19 0 chr4 83936477 83936529 -118391818 + MIR3 SINE MIR 105 157 -51 281 231 0 0 chr4 83936539 83936591 -118391756 - MIR SINE MIR -5 257 206 286 370 55 22 chr4 83937072 83937253 -118391094 - MIR3 SINE MIR -13 195 9 25 0 0 0 chr4 83937303 83937328 -118391019 + AT_rich Low_complexity Low_complexity 1 25 0 2129 152 3 70 chr4 83937708 83938135 -118390212 + L1P5 LINE L1 4975 5429 -725 915 52 0 0 chr4 83938135 83938246 -118390101 + L1PA5 LINE L1 6029 6143 -11 387 0 0 0 chr4 83938247 83938290 -118390057 + (TA)n Simple_repeat Simple_repeat 1 43 0 2129 152 3 70 chr4 83938290 83938405 -118389942 + L1P5 LINE L1 5429 5550 -604 1295 152 188 4 chr4 83938405 83938655 -118389692 - AluJb SINE Alu -6 296 1 2129 152 3 70 chr4 83938655 83938890 -118389457 + L1P5 LINE L1 5550 5692 -462 461 84 14 0 chr4 83939005 83939076 -118389271 + (TTCC)n Simple_repeat Simple_repeat 2 73 0 2288 109 3 0 chr4 83939092 83939403 -118388944 - AluSp SINE Alu -1 312 1 1648 186 67 12 chr4 83940522 83940866 -118387481 + MLT1A1 LTR MaLR 3 365 0 353 247 49 0 chr4 83941096 83941177 -118387170 - L2 LINE L2 0 3272 3188 486 302 88 5 chr4 83941518 83941723 -118386624 + HAL1 LINE L1 148 369 -2138 352 319 37 15 chr4 83941741 83941876 -118386471 + HAL1 LINE L1 533 670 -1837 237 379 10 19 chr4 83942191 83942294 -118386053 + MIR SINE MIR 23 124 -138 192 152 0 0 chr4 83942492 83942525 -118385822 + (CA)n Simple_repeat Simple_repeat 1 33 0 215 293 0 0 chr4 83942928 83942986 -118385361 + GA-rich Low_complexity Low_complexity 3 60 0 265 248 184 0 chr4 83943985 83944094 -118384253 + MIR SINE MIR 132 260 -2 342 185 49 0 chr4 83944755 83944836 -118383511 + L1ME4a LINE L1 5742 5826 -295 677 289 44 37 chr4 83944838 83945108 -118383239 + L1MEc LINE L1 35 306 -6090 671 233 82 23 chr4 83945112 83945331 -118383016 + MER69B DNA AcHobo 731 962 -264 890 107 0 0 chr4 83945332 83945453 -118382894 + AluSg/x SINE Alu 176 296 -14 868 229 30 15 chr4 83945453 83945719 -118382628 + MER69B DNA AcHobo 954 1223 -3 244 322 59 42 chr4 83945961 83946079 -118382268 - L2 LINE L2 -3 3269 3150 448 232 98 36 chr4 83946173 83946397 -118381950 + MER112 DNA MER1_type 22 259 -1 26 0 0 0 chr4 83946918 83946944 -118381403 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr4 83947194 83947219 -118381128 + AT_rich Low_complexity Low_complexity 1 25 0 374 374 91 32 chr4 83947772 83948112 -118380235 + L2 LINE L2 2913 3272 0 213 132 0 0 chr4 83949240 83949278 -118379069 + (TA)n Simple_repeat Simple_repeat 1 38 0 2292 114 0 0 chr4 83949278 83949577 -118378770 - AluSx SINE Alu -13 299 1 208 345 112 0 chr4 83949840 83949956 -118378391 - L2 LINE L2 -686 2628 2500 247 265 103 34 chr4 83950361 83950478 -118377869 - MIR SINE MIR -52 210 86 194 324 44 0 chr4 83952333 83952401 -118375946 - MIR SINE MIR -86 176 106 580 178 5 132 chr4 83952948 83953161 -118375186 - L1MD3 LINE L1 -104 7891 7706 242 192 0 0 chr4 83953172 83953224 -118375123 - L1MC4 LINE L1 -5 8037 7986 1477 237 237 4 chr4 83953226 83953761 -118374586 - L1MC4 LINE L1 -143 7899 7240 334 220 0 0 chr4 83953763 83953854 -118374493 - L1MC4 LINE L1 -953 7089 6999 * 4264 207 82 8 chr4 83953850 83954416 -118373931 - L1MD2 LINE L1 -2 6357 5834 1392 195 68 37 chr4 83954416 83954770 -118373577 + MLT1A1 LTR MaLR 1 365 0 4264 207 82 8 chr4 83954770 83955190 -118373157 - L1MD2 LINE L1 -525 5834 5298 885 279 89 3 chr4 83955182 83955478 -118372869 - L1MC4 LINE L1 -1020 7006 6648 * 279 0 0 0 chr4 83955478 83955509 -118372838 + (CA)n Simple_repeat Simple_repeat 2 32 0 885 279 89 3 chr4 83955509 83955555 -118372792 - L1MC4 LINE L1 -1378 6648 6607 2497 182 67 20 chr4 83955561 83956066 -118372281 + MER44D DNA MER2_type 22 605 0 461 280 79 1 chr4 83956072 83956241 -118372106 - L1MC4a LINE L1 -1220 6588 6446 2026 172 26 3 chr4 83956241 83956584 -118371763 + MLT1A1 LTR MaLR 3 353 -12 946 285 48 46 chr4 83960078 83960516 -118367831 + LTR16A LTR ERVL 12 450 0 227 295 16 16 chr4 83961043 83961104 -118367243 + L2 LINE L2 3252 3312 -1 22 56 0 0 chr4 83961280 83961316 -118367031 + AT_rich Low_complexity Low_complexity 1 36 0 317 234 0 85 chr4 83961764 83961858 -118366489 - MER81 DNA DNA -26 88 3 552 268 28 2 chr4 83962822 83963015 -118365332 + L1MD2 LINE L1 2814 3011 -3135 1273 219 62 0 chr4 83963046 83963334 -118365013 + AluJo SINE Alu 4 309 -3 667 111 8 17 chr4 83963334 83963451 -118364896 + (GGAA)n Simple_repeat Simple_repeat 1 116 0 1530 248 58 72 chr4 83963489 83964379 -118363968 + L1MD2 LINE L1 3056 3933 -2213 1592 187 7 11 chr4 83964413 83964696 -118363651 - AluJb SINE Alu -24 288 7 5555 157 55 8 chr4 83964720 83966000 -118362347 - L1MA8 LINE L1 -25 6266 4920 2197 100 7 3 chr4 83966020 83966311 -118362036 + AluSc SINE Alu 1 292 -17 2107 265 47 73 chr4 83966311 83967339 -118361008 + L1MD2 LINE L1 3948 4948 -1198 251 33 0 0 chr4 83968309 83968339 -118360008 + LTR6A LTR ERV1 73 102 -462 1234 246 51 21 chr4 83968433 83968974 -118359373 + L1MD2 LINE L1 4984 5543 -623 825 212 27 81 chr4 83968980 83969202 -118359145 + MLT1-int LTR MaLR 1002 1211 -160 673 103 0 0 chr4 83969205 83969302 -118359045 + MSTA LTR MaLR 1 97 -331 1093 231 47 25 chr4 83969311 83969671 -118358676 + L1MD2 LINE L1 5567 5934 -425 2274 209 42 81 chr4 83969684 83969750 -118358597 + MLT1C-int LTR MaLR 6 73 -1298 1604 256 35 33 chr4 83969750 83970297 -118358050 - LTR55 LTR ERV 0 548 1 2274 209 42 81 chr4 83970297 83971031 -118357316 + MLT1C-int LTR MaLR 73 886 -485 1234 220 34 113 chr4 83971176 83971434 -118356913 + MLT1C-int LTR MaLR 966 1176 -195 1878 176 93 18 chr4 83971434 83971832 -118356515 + MSTA LTR MaLR 1 428 0 1234 220 34 113 chr4 83971832 83972014 -118356333 + MLT1C-int LTR MaLR 1176 1371 0 1259 242 100 28 chr4 83972021 83972450 -118355897 + MLT1C LTR MaLR 8 467 0 224 222 0 0 chr4 83977340 83977394 -118350953 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 2078 135 0 10 chr4 83977512 83977815 -118350532 - AluSx SINE Alu -8 304 5 181 336 80 9 chr4 83977836 83977949 -118350398 + L2 LINE L2 3193 3313 0 1825 88 103 0 chr4 83978311 83978584 -118349763 - L1PA10 LINE L1 -5 6163 5863 2369 74 0 29 chr4 83979074 83979385 -118348962 - AluY SINE Alu -4 307 6 690 281 47 67 chr4 83979414 83979667 -118348680 + MIR SINE MIR 2 249 -13 354 325 62 19 chr4 83979936 83980096 -118348251 + MIR SINE MIR 41 207 -55 699 309 5 0 chr4 83981155 83981343 -118347004 - MIR SINE MIR -10 252 64 392 287 85 32 chr4 83982398 83982645 -118345702 - LTR16C LTR ERVL 0 491 232 206 164 18 0 chr4 83983085 83983140 -118345207 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 807 231 11 11 chr4 83985294 83985480 -118342867 - MER58A DNA MER1_type -2 222 37 21 0 0 0 chr4 83985597 83985618 -118342729 + AT_rich Low_complexity Low_complexity 1 21 0 211 361 103 0 chr4 83985619 83985716 -118342631 + MIR SINE MIR 38 144 -64 1910 144 3 53 chr4 83988491 83988810 -118339537 + AluSx SINE Alu 2 304 -8 1880 220 73 13 chr4 83989024 83989547 -118338800 - L1ME2 LINE L1 -55 6109 5556 1584 207 143 14 chr4 83989578 83990018 -118338329 - MLT1D LTR MaLR -8 497 1 470 283 164 18 chr4 83990114 83990333 -118338014 - MIR SINE MIR -2 260 10 592 261 135 19 chr4 83991086 83991293 -118337054 - MIR SINE MIR -30 232 2 1139 225 32 20 chr4 83993587 83993840 -118334507 - MIR SINE MIR 0 262 7 342 0 0 0 chr4 83994633 83994671 -118333676 + (T)n Simple_repeat Simple_repeat 1 38 0 592 278 81 5 chr4 83994867 83995065 -118333282 - MIR SINE MIR -48 214 2 532 307 68 10 chr4 83995286 83995491 -118332856 - MIR SINE MIR -32 230 14 531 269 14 85 chr4 83996348 83996571 -118331776 - L2 LINE L2 0 3313 3107 6089 206 45 13 chr4 83996624 83998395 -118329952 - L1 LINE L1 -2403 5162 3329 180 0 0 0 chr4 83998438 83998458 -118329889 + (CA)n Simple_repeat Simple_repeat 1 20 0 3675 173 26 61 chr4 83998458 83998492 -118329855 + L1 LINE L1 3744 3778 -2368 2294 101 0 0 chr4 83998492 83998790 -118329557 + AluY SINE Alu 1 298 -13 3675 173 26 61 chr4 83998790 83999694 -118328653 + L1 LINE L1 3778 4649 -1497 4622 88 11 0 chr4 83999720 84000376 -118327971 - L1PA11 LINE L1 -20 6154 5492 8798 221 26 28 chr4 84000476 84003695 -118324652 - L1PA12 LINE L1 -3143 4441 420 2429 202 15 17 chr4 84003710 84004305 -118324042 + L1 LINE L1 4639 5232 -914 38169 76 6 1 chr4 84004405 84009540 -118318807 - HERVL-A1 LTR ERVL -271 5383 223 2688 82 28 8 chr4 84009542 84009934 -118318413 - MLT2A1 LTR ERVL -44 400 1 428 142 242 67 chr4 84009934 84010053 -118318294 - MER44D DNA MER2_type -198 411 2 346 319 90 6 chr4 84010115 84010281 -118318066 - MIR SINE MIR -41 221 42 228 205 0 0 chr4 84010807 84010846 -118317501 + MLT1L LTR MaLR 352 390 -225 356 181 86 9 chr4 84010859 84010975 -118317372 + MER53 DNA DNA 2 126 -63 22 0 0 0 chr4 84011002 84011024 -118317323 + AT_rich Low_complexity Low_complexity 1 22 0 331 323 143 9 chr4 84012861 84013078 -118315269 + L1M2 LINE L1 993 1238 -5611 750 307 144 35 chr4 84013645 84013937 -118314410 - L2 LINE L2 -1444 1870 1611 991 189 31 54 chr4 84013937 84014159 -118314188 - MER20 DNA MER1_type 0 219 3 750 307 144 35 chr4 84014159 84014358 -118313989 - L2 LINE L2 -1703 1611 1325 1376 297 128 29 chr4 84014361 84015095 -118313252 - L2 LINE L2 -2421 893 87 2162 183 100 39 chr4 84016446 84016964 -118311383 + MER44D DNA MER2_type 1 605 0 986 214 63 0 chr4 84017035 84017241 -118311106 - MER20 DNA MER1_type 0 219 1 189 325 86 34 chr4 84017453 84017570 -118310777 - L3 LINE CR1 -237 1340 1218 1994 130 0 7 chr4 84017803 84018111 -118310236 - AluSg SINE Alu 0 306 1 1775 122 72 32 chr4 84019322 84019600 -118308747 + AluJo SINE Alu 24 312 0 22 70 0 0 chr4 84020013 84020056 -118308291 + AT_rich Low_complexity Low_complexity 1 43 0 3651 198 88 36 chr4 84020842 84021825 -118306522 + MER45B DNA AcHobo 2 1035 -5 260 289 123 9 chr4 84022006 84022120 -118306227 + MIR3 SINE MIR 58 184 -24 391 297 137 28 chr4 84022351 84022563 -118305784 - MIR SINE MIR -16 246 12 24 85 0 0 chr4 84022740 84022799 -118305548 + AT_rich Low_complexity Low_complexity 1 59 0 465 276 37 40 chr4 84024397 84024720 -118303627 - L1M4 LINE L1 -1599 4547 4226 381 373 39 0 chr4 84024739 84024892 -118303455 + L1M4 LINE L1 4667 4825 -1321 1731 294 88 15 chr4 84024912 84025573 -118302774 + L2 LINE L2 1832 2540 -774 742 207 108 123 chr4 84025573 84026027 -118302320 + L1MC5 LINE L1 6683 7129 -832 558 293 46 23 chr4 84026353 84026527 -118301820 + LTR16C LTR ERVL 300 477 -14 1906 224 87 44 chr4 84026538 84027312 -118301035 + L1MC5 LINE L1 7119 7925 -36 583 262 71 27 chr4 84027313 84027496 -118300851 + L2 LINE L2 2536 2726 -588 * 1486 264 114 132 chr4 84027493 84029100 -118299247 - L2 LINE L2 -647 2667 1090 1610 136 27 168 chr4 84029188 84029592 -118298755 + MER7A DNA MER2_type 1 345 -1 206 233 0 0 chr4 84029606 84029649 -118298698 + L2 LINE L2 3267 3309 -4 543 277 98 57 chr4 84030189 84031925 -118296422 + L1MC4a LINE L1 4060 5790 -452 827 194 91 6 chr4 84033025 84033190 -118295157 + FAM SINE Alu 1 43 -6 25 31 0 0 chr4 84033451 84033483 -118294864 + AT_rich Low_complexity Low_complexity 1 32 0 261 294 98 0 chr4 84035383 84035485 -118292862 - MIR SINE MIR -57 205 94 2197 150 107 20 chr4 84036542 84036936 -118291411 + MSTC LTR MaLR 1 428 0 182 62 31 0 chr4 84037206 84037238 -118291109 + (TA)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr4 84037254 84037276 -118291071 + AT_rich Low_complexity Low_complexity 1 22 0 342 80 0 0 chr4 84037291 84037341 -118291006 + (TA)n Simple_repeat Simple_repeat 1 50 0 285 240 111 10 chr4 84038671 84038773 -118289574 - MIR3 SINE MIR -18 190 78 2255 152 47 26 chr4 84039724 84040106 -118288241 - MLT1B LTR MaLR 0 390 1 234 321 109 30 chr4 84040232 84040397 -118287950 + MER5B DNA MER1_type 1 178 0 185 278 0 0 chr4 84040428 84040464 -118287883 - MER5A DNA MER1_type -28 161 126 1627 164 20 24 chr4 84040465 84040763 -118287584 + AluJo SINE Alu 1 297 -15 413 339 39 16 chr4 84040874 84041001 -118287346 - MIR3 SINE MIR -48 160 31 2127 91 0 14 chr4 84041685 84041971 -118286376 + AluSq SINE Alu 29 310 -3 255 319 76 38 chr4 84042297 84042454 -118285893 + MER5A DNA MER1_type 1 163 -26 382 59 0 29 chr4 84042823 84042891 -118285456 + (TA)n Simple_repeat Simple_repeat 2 67 0 442 157 20 10 chr4 84044236 84044338 -118284009 + CT-rich Low_complexity Low_complexity 3 105 0 297 140 0 0 chr4 84044786 84044843 -118283504 + (TA)n Simple_repeat Simple_repeat 1 57 0 272 70 23 0 chr4 84044855 84044898 -118283449 + (TG)n Simple_repeat Simple_repeat 2 45 0 247 214 0 18 chr4 84045475 84045531 -118282816 + MIR SINE MIR 174 228 -34 242 333 9 0 chr4 84045556 84045661 -118282686 + (TA)n Simple_repeat Simple_repeat 2 107 0 216 0 0 0 chr4 84046191 84046215 -118282132 + (TG)n Simple_repeat Simple_repeat 2 25 0 584 85 52 44 chr4 84046253 84046564 -118281783 + (TG)n Simple_repeat Simple_repeat 1 313 0 651 63 86 4 chr4 84046586 84046849 -118281498 + (TG)n Simple_repeat Simple_repeat 1 284 0 240 35 0 0 chr4 84048755 84048784 -118279563 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 213 267 46 105 chr4 84049010 84049165 -118279182 - MIR SINE MIR -22 186 40 22 0 0 0 chr4 84049237 84049259 -118279088 + AT_rich Low_complexity Low_complexity 1 22 0 207 133 0 0 chr4 84050979 84051024 -118277323 + (TG)n Simple_repeat Simple_repeat 2 46 0 226 294 12 0 chr4 84051452 84051537 -118276810 + (CGG)n Simple_repeat Simple_repeat 2 87 0 319 276 71 99 chr4 84051699 84052160 -118276187 + L1M2 LINE L1 476 1406 -5443 204 125 0 0 chr4 84052411 84052443 -118275904 + (CCG)n Simple_repeat Simple_repeat 3 34 0 219 306 0 14 chr4 84052642 84052714 -118275633 + (CCG)n Simple_repeat Simple_repeat 2 72 0 285 98 0 0 chr4 84052861 84052902 -118275445 + (CA)n Simple_repeat Simple_repeat 1 41 0 308 230 68 0 chr4 84054995 84055069 -118273278 - L1MC4 LINE L1 -1324 6718 6640 276 53 0 0 chr4 84055737 84055775 -118272572 + (A)n Simple_repeat Simple_repeat 1 38 0 24 0 0 0 chr4 84055997 84056021 -118272326 + AT_rich Low_complexity Low_complexity 1 24 0 195 42 0 0 chr4 84057183 84057207 -118271140 + (GGGA)n Simple_repeat Simple_repeat 2 25 0 279 0 0 0 chr4 84058796 84058827 -118269520 + (TC)n Simple_repeat Simple_repeat 2 32 0 243 0 0 0 chr4 84058826 84058853 -118269494 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 282 29 0 0 chr4 84059222 84059257 -118269090 + (CA)n Simple_repeat Simple_repeat 2 36 0 215 133 22 0 chr4 84062723 84062768 -118265579 + GA-rich Low_complexity Low_complexity 1 46 0 417 299 186 6 chr4 84064962 84065139 -118263208 + MIR SINE MIR 35 243 -19 554 313 30 6 chr4 84066127 84066293 -118262054 + MIR SINE MIR 13 182 -80 274 182 164 109 chr4 84066292 84066402 -118261945 + MIR SINE MIR 46 161 -101 * 192 237 0 0 chr4 84066772 84066810 -118261537 + L2 LINE L2 3226 3263 -9 246 152 15 30 chr4 84068299 84068365 -118259982 + CT-rich Low_complexity Low_complexity 2 66 0 227 173 19 0 chr4 84070270 84070322 -118258025 + GA-rich Low_complexity Low_complexity 2 54 0 21 36 0 0 chr4 84070448 84070476 -118257871 + GC_rich Low_complexity Low_complexity 1 28 0 307 295 152 18 chr4 84070876 84071093 -118257254 - L1M2 LINE L1 -5611 1238 993 624 334 108 37 chr4 84071777 84072754 -118255593 + L2 LINE L2 2221 3267 -5 222 37 0 0 chr4 84074375 84074402 -118253945 + (TA)n Simple_repeat Simple_repeat 1 27 0 1579 108 45 18 chr4 84074414 84074636 -118253711 + MER30 DNA MER1_type 3 230 0 239 329 0 0 chr4 84074724 84074800 -118253547 + MIR3 SINE MIR 123 198 -10 839 324 139 33 chr4 84074901 84075808 -118252539 + L2 LINE L2 1178 2180 -1134 350 85 17 0 chr4 84075856 84075915 -118252432 + (TA)n Simple_repeat Simple_repeat 2 61 0 250 313 118 7 chr4 84076405 84076549 -118251798 - L2 LINE L2 -1917 1397 1238 1340 96 0 0 chr4 84078170 84078337 -118250010 - AluSg SINE Alu -115 195 29 23 54 0 0 chr4 84079089 84079126 -118249221 + AT_rich Low_complexity Low_complexity 1 37 0 2247 117 0 0 chr4 84081418 84081717 -118246630 - AluSx SINE Alu -13 299 1 183 129 0 0 chr4 84081883 84081914 -118246433 + (TA)n Simple_repeat Simple_repeat 2 32 0 1137 130 48 4 chr4 84082185 84082416 -118245931 - L1MA8 LINE L1 -1 6290 6050 181 265 41 0 chr4 84082541 84082590 -118245757 + MIR3 SINE MIR 126 176 -32 180 320 0 0 chr4 84082799 84082849 -118245498 - L2 LINE L2 -1 3271 3222 803 252 121 61 chr4 84082958 84083387 -118244960 + LTR33 LTR ERVL 60 514 -7 15364 211 27 25 chr4 84084048 84084788 -118243559 + L1PA12 LINE L1 1 738 -6846 2257 114 16 0 chr4 84084788 84085094 -118243253 - AluSp SINE Alu -2 311 1 15364 211 27 25 chr4 84085094 84087526 -118240821 + L1PA12 LINE L1 738 3163 -4421 2750 25 0 16 chr4 84087526 84087844 -118240503 + AluYb8 SINE Alu 1 313 -5 15364 211 27 25 chr4 84087844 84089284 -118239063 + L1PA12 LINE L1 3163 5704 -1880 204 40 0 0 chr4 84089285 84089310 -118239037 + (TTA)n Simple_repeat Simple_repeat 3 27 0 7253 60 5 0 chr4 84089310 84091011 -118237336 - L1PA6 LINE L1 -18 6136 4431 853 213 167 30 chr4 84094920 84095249 -118233098 + MLT1A2 LTR MaLR 1 374 0 1882 158 0 46 chr4 84096078 84096401 -118231946 - AluJo SINE Alu -4 308 1 224 260 0 0 chr4 84097117 84097167 -118231180 + A-rich Low_complexity Low_complexity 1 50 0 321 64 0 0 chr4 84099110 84099157 -118229190 - L1MA3 LINE L1 0 6305 6259 1118 316 89 11 chr4 84099511 84099789 -118228558 + L2 LINE L2 2448 2703 -610 1522 214 7 13 chr4 84099789 84100098 -118228249 - AluJo SINE Alu -5 307 1 1118 316 89 11 chr4 84100098 84100126 -118228221 + L2 LINE L2 2703 2727 -586 2095 150 0 0 chr4 84100126 84100433 -118227914 - AluSp SINE Alu -6 307 1 1118 316 89 11 chr4 84100433 84100728 -118227619 + L2 LINE L2 2727 3102 -211 602 280 19 19 chr4 84100797 84100954 -118227393 - MIR SINE MIR -104 158 2 448 265 49 69 chr4 84100954 84101145 -118227202 + L2 LINE L2 3125 3311 -2 1817 89 148 0 chr4 84102850 84103107 -118225240 + AluSx SINE Alu 1 295 -7 1561 164 37 77 chr4 84103177 84103500 -118224847 + AluJo SINE Alu 1 310 -2 433 255 7 94 chr4 84103887 84104036 -118224311 + MIR SINE MIR 71 206 -56 273 233 67 11 chr4 84104831 84104921 -118223426 - L1ME1 LINE L1 -18 6148 6054 278 67 22 0 chr4 84105277 84105322 -118223025 + (TA)n Simple_repeat Simple_repeat 1 46 0 315 310 52 43 chr4 84106187 84106303 -118222044 + L2 LINE L2 3154 3270 -2 329 244 110 0 chr4 84106323 84106405 -118221942 + MIR SINE MIR 52 142 -120 1674 179 4 0 chr4 84106420 84106722 -118221625 - AluJb SINE Alu 0 305 3 2078 143 3 0 chr4 84106748 84107049 -118221298 + AluSx SINE Alu 1 302 -10 195 409 15 0 chr4 84107159 84107317 -118221030 + MIR SINE MIR 41 202 -6 32 57 0 0 chr4 84107330 84107383 -118220964 + AT_rich Low_complexity Low_complexity 1 53 0 2026 137 7 0 chr4 84107396 84107680 -118220667 + AluSx SINE Alu 21 306 -6 1706 162 19 29 chr4 84108734 84109048 -118219299 - AluJo SINE Alu -1 311 1 2134 134 42 0 chr4 84109136 84109539 -118218808 - L1PA13 LINE L1 -4 6159 5740 2617 163 24 5 chr4 84109641 84110206 -118218141 + L1MA4 LINE L1 5566 6162 -9 691 196 0 43 chr4 84110235 84110373 -118217974 + AluSq/x SINE Alu 1 132 -181 241 241 147 17 chr4 84110616 84110732 -118217615 + LTR16A LTR ERVL 320 450 0 684 346 111 27 chr4 84110745 84111237 -118217110 - L2 LINE L2 -230 3042 2522 21 36 0 0 chr4 84111353 84111381 -118216966 + AT_rich Low_complexity Low_complexity 1 28 0 1402 206 15 7 chr4 84111488 84111760 -118216587 - AluJo SINE Alu -21 291 18 30 0 0 0 chr4 84111795 84111825 -118216522 + AT_rich Low_complexity Low_complexity 1 30 0 5859 167 27 11 chr4 84111828 84113258 -118215089 - L1MC1 LINE L1 -18 6384 4933 182 191 21 0 chr4 84113310 84113357 -118214990 + (TA)n Simple_repeat Simple_repeat 1 48 0 224 379 64 14 chr4 84114174 84114314 -118214033 - L2 LINE L2 -385 2929 2783 1422 258 104 55 chr4 84114582 84115461 -118212886 - L1MC1 LINE L1 -2931 3284 2450 1138 90 0 24 chr4 84115461 84115627 -118212720 - L1PA10 LINE L1 -4 6164 6003 1422 258 104 55 chr4 84115627 84116429 -118211918 - L1MC1 LINE L1 -3765 2450 1535 595 282 50 86 chr4 84116442 84116839 -118211508 - L1MEd LINE L1 -1234 1667 1258 27 29 0 0 chr4 84117296 84117330 -118211017 + AT_rich Low_complexity Low_complexity 1 34 0 295 296 32 8 chr4 84119083 84119208 -118209139 + MIR SINE MIR 81 208 -54 2439 81 13 0 chr4 84119497 84119806 -118208541 - AluSp SINE Alu 0 313 1 2825 3 0 0 chr4 84120453 84120758 -118207589 - AluYa5 SINE Alu -6 305 1 712 216 0 0 chr4 84120921 84121046 -118207301 + FLAM_A SINE Alu 1 125 -8 2945 83 4 18 chr4 84121580 84122037 -118206310 - L1P4 LINE L1 -374 5789 5339 22 0 0 0 chr4 84122069 84122091 -118206256 + AT_rich Low_complexity Low_complexity 1 22 0 2012 119 22 7 chr4 84122594 84122872 -118205475 - AluSx SINE Alu -28 284 3 1926 192 33 48 chr4 84122996 84123480 -118204867 - L1MB2 LINE L1 -1 6170 5694 245 312 32 64 chr4 84123573 84123791 -118204556 + L3 LINE CR1 798 1008 -569 205 302 198 19 chr4 84123823 84123929 -118204418 + L3 LINE CR1 1116 1240 -337 22 80 0 0 chr4 84124231 84124281 -118204066 + AT_rich Low_complexity Low_complexity 1 50 0 281 232 66 55 chr4 84124568 84124749 -118203598 - L1MB2 LINE L1 -2064 5744 5562 407 288 169 0 chr4 84124833 84125017 -118203330 + L3 LINE CR1 1238 1452 -125 26 88 0 0 chr4 84125135 84125203 -118203144 + AT_rich Low_complexity Low_complexity 1 68 0 209 315 27 72 chr4 84126914 84127025 -118201322 - L2 LINE L2 -42 3271 3166 1654 171 7 4 chr4 84127041 84127321 -118201026 + AluJo SINE Alu 1 281 -31 531 0 0 0 chr4 84127322 84127381 -118200966 + (AATAG)n Simple_repeat Simple_repeat 2 60 0 2358 295 55 14 chr4 84127390 84128304 -118200043 - L2 LINE L2 -206 3107 2153 1320 91 0 0 chr4 84128428 84128603 -118199744 - L1P LINE L1 -1938 4208 4034 6226 131 24 18 chr4 84128603 84129814 -118198533 + L1P4 LINE L1 4250 5463 -705 832 188 45 0 chr4 84129819 84129973 -118198374 + MLT1B LTR MaLR 219 379 -11 678 255 7 45 chr4 84130143 84130416 -118197931 - MLT2F LTR ERVL -64 599 280 550 245 7 20 chr4 84130431 84130582 -118197765 - MLT2F LTR ERVL -514 149 1 361 368 60 3 chr4 84130937 84131222 -118197125 + L1M4 LINE L1 3984 4284 -1862 2312 269 97 14 chr4 84131222 84131623 -118196724 + L1M2 LINE L1 1164 1530 -4866 4136 67 4 11 chr4 84131623 84132179 -118196168 + L1PA8 LINE L1 5621 6172 0 2312 269 97 14 chr4 84132179 84132941 -118195406 + L1M2 LINE L1 1530 2369 -4027 205 209 33 55 chr4 84132975 84133157 -118195190 + (TAA)n Simple_repeat Simple_repeat 1 178 0 2335 251 79 7 chr4 84133168 84133496 -118194851 + L1M2 LINE L1 2345 2648 -3567 2090 136 3 0 chr4 84133496 84133798 -118194549 + AluSx SINE Alu 1 303 -9 2335 251 79 7 chr4 84133798 84134378 -118193969 + L1M2 LINE L1 2648 3319 -2896 706 301 141 4 chr4 84134394 84134670 -118193677 + LTR16A LTR ERVL 137 450 0 248 281 0 12 chr4 84135338 84135420 -118192927 + L1P4 LINE L1 5350 5430 -735 21181 174 12 15 chr4 84135731 84136566 -118191781 - L1PA13 LINE L1 -3 6811 5975 2098 78 4 4 chr4 84136566 84136835 -118191512 - AluSg SINE Alu -9 301 33 21181 174 12 15 chr4 84136835 84141423 -118186924 - L1PA13 LINE L1 -839 5975 1398 448 326 79 11 chr4 84141434 84141624 -118186723 - L1PA13 LINE L1 -5529 1258 1056 237 302 63 8 chr4 84141695 84141821 -118186526 + L1ME4a LINE L1 5984 6116 -5 22 0 0 0 chr4 84143118 84143140 -118185207 + AT_rich Low_complexity Low_complexity 1 22 0 1670 266 47 26 chr4 84144950 84145018 -118183329 - MLT1E2 LTR MaLR 0 626 561 2333 67 3 0 chr4 84145018 84145301 -118183046 + AluY SINE Alu 1 284 -27 261 0 0 0 chr4 84145301 84145330 -118183017 + (CA)n Simple_repeat Simple_repeat 2 30 0 1670 266 47 26 chr4 84145330 84145797 -118182550 - MLT1E2 LTR MaLR -64 562 79 5850 86 22 6 chr4 84145805 84146627 -118181720 - L1PA11 LINE L1 -6 6168 5334 321 178 9 159 chr4 84146629 84146736 -118181611 - MLT1E2 LTR MaLR -535 91 1 285 301 48 24 chr4 84147727 84147810 -118180537 - L2 LINE L2 -38 3234 3150 2724 204 53 2 chr4 84147825 84148427 -118179920 + L1MB7 LINE L1 5531 6163 -21 867 341 45 35 chr4 84149190 84149858 -118178489 + L2 LINE L2 2585 3267 -5 218 139 47 0 chr4 84150527 84150570 -118177777 + (CA)n Simple_repeat Simple_repeat 2 46 0 2200 125 0 0 chr4 84151653 84151965 -118176382 - AluSx SINE Alu 0 312 1 1776 41 0 9 chr4 84152612 84152833 -118175514 + L1PA8 LINE L1 5948 6166 -6 254 73 24 0 chr4 84154466 84154507 -118173840 + (TTG)n Simple_repeat Simple_repeat 1 42 0 1559 138 9 101 chr4 84155615 84155772 -118172575 + AluJb SINE Alu 1 114 -198 3584 45 2 0 chr4 84155772 84156218 -118172129 + L1PA5 LINE L1 5708 6154 0 1559 138 9 101 chr4 84156218 84156386 -118171961 + AluJb SINE Alu 114 296 -16 200 222 0 0 chr4 84157027 84157063 -118171284 - MIR SINE MIR -64 144 109 191 255 21 0 chr4 84157075 84157122 -118171225 + L2 LINE L2 3261 3308 -5 360 0 0 0 chr4 84157530 84157570 -118170777 + (CA)n Simple_repeat Simple_repeat 1 40 0 26 0 0 0 chr4 84157777 84157803 -118170544 + AT_rich Low_complexity Low_complexity 1 26 0 4379 204 31 32 chr4 84158584 84160574 -118167773 - L1MB8 LINE L1 -9 6169 4187 24 0 0 0 chr4 84160582 84160606 -118167741 + AT_rich Low_complexity Low_complexity 1 24 0 2343 126 9 0 chr4 84160705 84161047 -118167300 - MER7A DNA MER2_type 0 346 4 221 226 0 0 chr4 84161869 84161922 -118166425 + (CAGAGA)n Simple_repeat Simple_repeat 3 55 0 574 311 15 15 chr4 84162397 84162593 -118165754 + MIR SINE MIR 49 244 -18 189 298 0 0 chr4 84163040 84163087 -118165260 + MIR SINE MIR 209 255 -7 205 250 0 0 chr4 84163375 84163419 -118164928 + (TCCA)n Simple_repeat Simple_repeat 3 46 0 1243 222 77 28 chr4 84163915 84164411 -118163936 - Charlie7 DNA MER1_type -84 2528 2009 297 0 0 0 chr4 84164539 84164572 -118163775 + (TG)n Simple_repeat Simple_repeat 2 34 0 1797 167 3 20 chr4 84165617 84165923 -118162424 - AluJo SINE Alu -11 301 1 239 320 48 24 chr4 84166317 84166442 -118161905 + MER5B DNA MER1_type 1 128 -50 185 304 22 0 chr4 84166483 84166529 -118161818 + MER5B DNA MER1_type 128 174 -4 825 202 71 0 chr4 84166703 84166871 -118161476 - MER5A DNA MER1_type -5 184 5 2048 154 0 0 chr4 84167391 84167770 -118160577 + AluSx SINE Alu 1 379 0 425 152 0 0 chr4 84167878 84167944 -118160403 + MER5A DNA MER1_type 124 189 0 582 225 76 23 chr4 84168383 84168575 -118159772 + MIR SINE MIR 3 202 -58 261 320 150 7 chr4 84170258 84170411 -118157936 + MIR SINE MIR 54 228 -34 1466 124 0 19 chr4 84172760 84173002 -118155345 - pTR5 LTR ERV1 -143 2295 177 255 296 0 0 chr4 84173002 84173083 -118155264 - LTR30 LTR ERV1 -98 624 544 5076 103 103 27 chr4 84173083 84174152 -118154195 - pTR5 LTR ERV1 -413 2025 741 2884 138 4 21 chr4 84174591 84175068 -118153279 + L1PA8 LINE L1 5704 6172 0 2036 52 107 4 chr4 84175091 84175362 -118152985 + AluY SINE Alu 1 299 -12 232 244 0 67 chr4 84175529 84175619 -118152728 + A-rich Low_complexity Low_complexity 2 85 0 1468 199 54 44 chr4 84175728 84176114 -118152233 - MLT1B LTR MaLR 0 390 1 5107 153 79 19 chr4 84176399 84176681 -118151666 + L1MA6 LINE L1 5019 5282 -1018 297 0 0 0 chr4 84176681 84176714 -118151633 + (TAA)n Simple_repeat Simple_repeat 2 34 0 5107 153 79 19 chr4 84176714 84177657 -118150690 + L1MA6 LINE L1 5282 6296 -4 1931 296 121 26 chr4 84178137 84179287 -118149060 - L2 LINE L2 -2 3311 1976 372 165 63 0 chr4 84179785 84179864 -118148483 - MER53 DNA DNA -81 108 25 462 288 207 23 chr4 84179878 84180187 -118148160 - LTR16A LTR ERVL -85 372 7 6878 63 7 1 chr4 84184720 84186265 -118142082 + L1PA4 LINE L1 4603 6152 -3 22 35 0 0 chr4 84186930 84186959 -118141388 + AT_rich Low_complexity Low_complexity 1 29 0 2040 80 3 55 chr4 84187730 84188019 -118140328 + AluSc SINE Alu 22 295 -14 22 35 0 0 chr4 84188668 84188697 -118139650 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 84189859 84189880 -118138467 + AT_rich Low_complexity Low_complexity 1 21 0 357 290 51 133 chr4 84191357 84191747 -118136600 - L2 LINE L2 -84 3188 2831 183 256 128 13 chr4 84191817 84191895 -118136452 + MIR SINE MIR 8 94 -168 2157 118 3 0 chr4 84192523 84192863 -118135484 - AluSx SINE Alu 0 312 1 28 29 0 0 chr4 84194133 84194168 -118134179 + AT_rich Low_complexity Low_complexity 1 35 0 282 316 51 0 chr4 84194396 84194494 -118133853 - L2 LINE L2 0 3272 3170 2155 125 3 0 chr4 84194755 84195050 -118133297 + AluSq SINE Alu 2 297 -16 336 391 0 19 chr4 84196069 84196225 -118132122 - MER5A DNA MER1_type -22 167 15 406 322 61 11 chr4 84197680 84197860 -118130487 - MIR SINE MIR -37 225 37 304 305 105 0 chr4 84198073 84198178 -118130169 - MIR SINE MIR -110 152 37 306 276 26 0 chr4 84199282 84199358 -118128989 + MIR SINE MIR 57 134 -128 21 0 0 0 chr4 84199535 84199556 -118128791 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr4 84200609 84200641 -118127706 + AT_rich Low_complexity Low_complexity 1 32 0 1307 80 21 5 chr4 84200647 84200835 -118127512 + L1PB1 LINE L1 5960 6150 -1 22 56 0 0 chr4 84201056 84201092 -118127255 + AT_rich Low_complexity Low_complexity 1 36 0 367 274 11 0 chr4 84201107 84201202 -118127145 - MIR SINE MIR 0 262 167 23 0 0 0 chr4 84202136 84202159 -118126188 + AT_rich Low_complexity Low_complexity 1 23 0 200 180 0 20 chr4 84203474 84203491 -118124856 + GA-rich Low_complexity Low_complexity 4 20 -32 732 169 0 37 chr4 84203491 84203627 -118124720 + FLAM_C SINE Alu 2 132 -1 200 180 0 20 chr4 84203627 84203659 -118124688 + GA-rich Low_complexity Low_complexity 20 52 0 414 85 0 0 chr4 84209546 84209605 -118118742 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 197 100 50 0 chr4 84209617 84209657 -118118690 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 542 163 33 0 chr4 84211805 84211897 -118116450 + FLAM_C SINE Alu 33 127 -16 385 292 152 27 chr4 84212150 84212509 -118115838 - LTR16A LTR ERVL 0 450 14 462 328 65 32 chr4 84212626 84213026 -118115321 - HERV16 LTR ERVL -428 5336 4924 2426 134 83 2 chr4 84213207 84213603 -118114744 - MSTA LTR MaLR 0 428 1 9206 166 22 15 chr4 84213603 84215243 -118113104 - MSTA-int LTR MaLR 0 1651 1 2297 151 84 0 chr4 84215243 84215635 -118112712 - MSTA LTR MaLR 0 428 4 489 189 22 0 chr4 84215747 84215837 -118112510 + MLT1B LTR MaLR 299 390 0 1297 313 60 2 chr4 84215871 84216305 -118112042 - HERV16 LTR ERVL -2139 2857 2399 567 277 0 108 chr4 84216298 84216656 -118111691 - HERV16 LTR ERVL -2824 2172 1905 * 2262 332 38 29 chr4 84216711 84218051 -118110296 - HERV16 LTR ERVL -3213 1783 366 717 309 5 0 chr4 84218289 84218512 -118109835 + HERV16 LTR ERVL 1041 1264 -3732 438 287 36 72 chr4 84218555 84218806 -118109541 - HERV16 LTR ERVL -4716 280 39 2441 214 114 36 chr4 84219237 84219912 -118108435 - L1ME1 LINE L1 -43 6123 5502 1882 146 0 0 chr4 84219912 84220186 -118108161 - AluSq SINE Alu -5 308 35 2441 214 114 36 chr4 84220186 84221052 -118107295 - L1ME1 LINE L1 -664 5502 4461 2488 99 0 0 chr4 84221063 84221395 -118106952 - THE1A LTR MaLR -23 332 1 4106 235 85 52 chr4 84221396 84223511 -118104836 - L1ME1 LINE L1 -1683 4463 2280 2228 123 0 3 chr4 84223688 84223989 -118104358 - AluSx SINE Alu -7 305 6 1042 260 0 13 chr4 84224646 84224979 -118103368 - AluYb8 SINE Alu 0 329 1 285 71 24 0 chr4 84225266 84225308 -118103039 - THE1-int LTR MaLR -319 1261 1219 768 167 94 0 chr4 84225312 84225450 -118102897 - THE1-int LTR MaLR -318 1262 1112 802 183 13 7 chr4 84225451 84225604 -118102743 - AluJo SINE Alu -154 158 5 1037 182 99 0 chr4 84225610 84225802 -118102545 - Tigger3(Golem) DNA MER2_type -2818 211 1 2230 159 18 0 chr4 84225804 84226195 -118102152 + L1M2 LINE L1 5383 5780 -532 271 274 0 11 chr4 84226214 84226309 -118102038 + (TA)n Simple_repeat Simple_repeat 1 94 0 1333 146 61 24 chr4 84227631 84227877 -118100470 + THE1C LTR MaLR 121 375 0 200 355 9 0 chr4 84227984 84228091 -118100256 - L2 LINE L2 -2912 402 295 467 297 81 0 chr4 84228315 84228463 -118099884 + MER63A DNA MER1_type 51 210 0 368 86 0 17 chr4 84228965 84229023 -118099324 + THE1C-int LTR MaLR 1524 1580 0 2415 133 3 16 chr4 84229026 84229403 -118098944 + THE1C LTR MaLR 4 375 0 6244 106 33 23 chr4 84229426 84230450 -118097897 + Tigger3b DNA MER2_type 198 1231 0 970 115 24 154 chr4 84230472 84230725 -118097622 + THE1C LTR MaLR 1 220 -155 1565 199 170 105 chr4 84230825 84231468 -118096879 - LTR49-int LTR ERV1 -5062 1269 580 1601 171 0 63 chr4 84231468 84231801 -118096546 - AluJo SINE Alu 0 312 1 1565 199 170 105 chr4 84231801 84231821 -118096526 - LTR49-int LTR ERV1 -5751 580 563 2209 144 3 6 chr4 84231821 84232161 -118096186 + MER50 LTR ERV1 373 711 -23 1017 201 0 16 chr4 84232175 84232359 -118095988 - LTR49-int LTR ERV1 -6150 181 1 964 169 70 39 chr4 84232361 84232688 -118095659 - LTR49 LTR ERV1 0 595 222 6870 64 8 1 chr4 84232792 84234227 -118094120 + L1PA7 LINE L1 4710 6151 -3 251 223 64 21 chr4 84234333 84234427 -118093920 - L1M4 LINE L1 -2197 3949 3852 855 292 25 59 chr4 84234566 84235005 -118093342 - LTR16A LTR ERVL 0 450 27 245 348 88 28 chr4 84235043 84235362 -118092985 + L2 LINE L2 2156 2493 -821 869 227 147 14 chr4 84235638 84235924 -118092423 - MER74A LTR ERVL -234 324 1 1475 216 169 24 chr4 84236021 84236489 -118091858 - LTR10A LTR ERV1 -61 548 13 2888 16 0 0 chr4 84236584 84236899 -118091448 - AluYb8 SINE Alu -3 315 1 816 313 112 24 chr4 84236932 84237539 -118090808 + L2 LINE L2 2368 3028 -285 787 137 89 6 chr4 84237629 84237779 -118090568 - MSTA-int LTR MaLR -175 1472 1253 553 246 34 0 chr4 84238347 84238465 -118089882 + FLAM_C SINE Alu 4 125 -8 1071 141 0 0 chr4 84238488 84238644 -118089703 - MSTA LTR MaLR 0 428 273 4541 188 12 4 chr4 84238679 84239515 -118088832 - MSTA-int LTR MaLR -808 843 1 2442 155 14 28 chr4 84239515 84239947 -118088400 - MSTA LTR MaLR 0 428 3 941 185 0 0 chr4 84239950 84240112 -118088235 + FRAM SINE Alu 3 164 -12 22 56 0 0 chr4 84240449 84240485 -118087862 + AT_rich Low_complexity Low_complexity 1 36 0 5310 144 16 6 chr4 84240568 84242086 -118086261 + L1PA15 LINE L1 4626 6165 0 194 387 40 13 chr4 84242891 84243041 -118085306 + L2 LINE L2 1821 1974 -1340 193 351 53 33 chr4 84244085 84244236 -118084111 + L2 LINE L2 1821 1974 -1340 288 244 18 0 chr4 84245382 84245604 -118082743 + (TA)n Simple_repeat Simple_repeat 1 226 0 200 315 67 34 chr4 84246995 84247084 -118081263 - L2 LINE L2 -256 3057 2966 285 298 354 6 chr4 84247513 84247694 -118080653 + MIR SINE MIR 2 245 -17 409 307 86 52 chr4 84247917 84248207 -118080140 - L2 LINE L2 0 3313 3014 378 0 0 0 chr4 84248482 84248524 -118079823 + (TA)n Simple_repeat Simple_repeat 2 43 0 37 0 0 0 chr4 84248836 84248873 -118079474 + AT_rich Low_complexity Low_complexity 1 37 0 21 89 0 0 chr4 84248898 84248954 -118079393 + AT_rich Low_complexity Low_complexity 1 56 0 316 186 16 39 chr4 84248989 84249118 -118079229 + (TA)n Simple_repeat Simple_repeat 1 126 0 258 360 44 0 chr4 84250390 84250504 -118077843 + L2 LINE L2 2493 2611 -703 1277 248 3 0 chr4 84251403 84251685 -118076662 - AluJb SINE Alu -29 283 1 389 235 0 31 chr4 84252118 84252216 -118076131 + MIR SINE MIR 72 166 -96 21 0 0 0 chr4 84252258 84252279 -118076068 + AT_rich Low_complexity Low_complexity 1 21 0 672 258 56 26 chr4 84253708 84253941 -118074406 - MIR SINE MIR -10 252 13 2360 131 17 64 chr4 84255263 84255683 -118072664 - LTR32 LTR ERVL -5 466 67 413 324 24 78 chr4 84255760 84256053 -118072294 - L2 LINE L2 -70 3202 2926 1755 145 0 69 chr4 84256318 84256621 -118071726 - AluJb SINE Alu -20 292 11 22 99 0 0 chr4 84256710 84256781 -118071566 + AT_rich Low_complexity Low_complexity 1 71 0 397 284 61 51 chr4 84257480 84257677 -118070670 - L2 LINE L2 -19 3294 3096 350 326 99 17 chr4 84257870 84258051 -118070296 + L2 LINE L2 3118 3313 0 233 335 74 63 chr4 84260841 84261110 -118067237 - L2 LINE L2 -351 2963 2692 22 0 0 0 chr4 84261242 84261264 -118067083 + AT_rich Low_complexity Low_complexity 1 22 0 314 301 147 13 chr4 84261429 84261585 -118066762 - MIR SINE MIR -10 252 76 22 35 0 0 chr4 84261819 84261848 -118066499 + AT_rich Low_complexity Low_complexity 1 29 0 348 216 34 11 chr4 84262364 84262452 -118065895 + MLT1E LTR MaLR 442 531 -62 410 347 107 42 chr4 84262810 84263239 -118065108 - L2 LINE L2 -359 2955 2499 2144 245 41 22 chr4 84263285 84263819 -118064528 + MLT1E LTR MaLR 50 593 0 448 273 22 43 chr4 84263889 84264028 -118064319 - L2 LINE L2 -932 2382 2247 751 256 78 26 chr4 84264033 84264224 -118064123 + MER20 DNA MER1_type 19 219 0 239 382 34 11 chr4 84264250 84264428 -118063919 - L2 LINE L2 -1090 2224 2043 210 333 67 0 chr4 84264443 84264518 -118063829 + L2 LINE L2 2115 2194 -1120 1505 210 69 2 chr4 84264689 84265121 -118063226 - MLT2B1 LTR ERVL -6 514 1 5053 190 24 27 chr4 84265214 84267109 -118061238 + L1MB3 LINE L1 4292 6183 0 22 56 0 0 chr4 84268778 84268814 -118059533 + AT_rich Low_complexity Low_complexity 1 36 0 32 26 0 0 chr4 84269575 84269614 -118058733 + AT_rich Low_complexity Low_complexity 1 39 0 4158 107 29 3 chr4 84270102 84270721 -118057626 - MER41B LTR ERV1 0 635 1 261 139 0 0 chr4 84271030 84271073 -118057274 + (TATATG)n Simple_repeat Simple_repeat 6 48 0 775 181 14 119 chr4 84271119 84271329 -118057018 + MLT1A1 LTR MaLR 171 365 0 276 149 0 0 chr4 84271519 84271566 -118056781 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 2733 202 23 28 chr4 84271616 84272259 -118056088 - L1MA7 LINE L1 -11 6280 5641 4140 154 24 17 chr4 84272260 84272966 -118055381 - MER50 LTR ERV1 -23 711 1 1972 137 41 23 chr4 84272966 84273108 -118055239 - L1MA7 LINE L1 -647 5644 5506 3354 134 53 3 chr4 84273108 84273673 -118054674 - LTR49 LTR ERV1 -2 593 1 1972 137 41 23 chr4 84273673 84274000 -118054347 - L1MA7 LINE L1 -785 5506 5169 23 0 0 0 chr4 84275616 84275639 -118052708 + AT_rich Low_complexity Low_complexity 1 23 0 1611 124 37 121 chr4 84276057 84276436 -118051911 - MER7A DNA MER2_type -1 345 1 337 143 0 0 chr4 84276633 84276682 -118051665 + MER53 DNA DNA 1 49 -140 737 138 8 10 chr4 84278325 84278449 -118049898 + MSTD LTR MaLR 1 108 -288 353 301 40 51 chr4 84279776 84279952 -118048395 + MER5A DNA MER1_type 5 189 0 357 320 33 0 chr4 84279953 84280075 -118048272 + MIR SINE MIR 11 136 -126 871 281 34 66 chr4 84280617 84281055 -118047292 - LTR16A LTR ERVL 0 450 27 299 350 73 28 chr4 84281093 84281382 -118046965 + L2 LINE L2 2156 2457 -857 2861 10 0 0 chr4 84281688 84282030 -118046317 - AluYa5 SINE Alu 0 342 1 1981 108 6 70 chr4 84282032 84282348 -118045999 - AluSx SINE Alu -16 296 1 241 402 67 10 chr4 84282405 84282614 -118045733 + L2 LINE L2 2639 2859 -455 24 67 0 0 chr4 84283924 84283969 -118044378 + AT_rich Low_complexity Low_complexity 1 45 0 22 35 0 0 chr4 84284246 84284275 -118044072 + AT_rich Low_complexity Low_complexity 1 29 0 34 0 0 0 chr4 84284420 84284454 -118043893 + AT_rich Low_complexity Low_complexity 1 34 0 207 0 0 0 chr4 84285484 84285507 -118042840 + (TG)n Simple_repeat Simple_repeat 1 23 0 1839 152 37 67 chr4 84285637 84286038 -118042309 - MLT1B LTR MaLR -1 389 1 24 32 0 0 chr4 84287274 84287305 -118041042 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 84288091 84288112 -118040235 + AT_rich Low_complexity Low_complexity 1 21 0 2122 120 0 0 chr4 84288154 84288485 -118039862 + AluSx SINE Alu 1 331 0 267 295 116 17 chr4 84289038 84289211 -118039136 + HAL1 LINE L1 679 868 -1639 3335 158 34 67 chr4 84289269 84289984 -118038363 - LTR8 LTR ERV1 0 691 1 1977 255 163 21 chr4 84290404 84291580 -118036767 - L2 LINE L2 -3 3310 1964 657 123 39 123 chr4 84292774 84292953 -118035394 - LTR49 LTR ERV1 -420 175 12 324 330 86 4 chr4 84292993 84293210 -118035137 + MLT1J1 LTR MaLR 202 446 -4 200 370 65 28 chr4 84293213 84293321 -118035026 + L2 LINE L2 1126 1237 -2077 4598 130 59 66 chr4 84293327 84294230 -118034117 - MER4D LTR ERV1 -7 896 1 293 321 144 36 chr4 84294230 84294535 -118033812 + L2 LINE L2 1233 1570 -1744 198 382 45 0 chr4 84294561 84294650 -118033697 + L2 LINE L2 3155 3247 -25 239 305 225 32 chr4 84294683 84295359 -118032988 + L2 LINE L2 1614 2419 -895 24 32 0 0 chr4 84295654 84295685 -118032662 + AT_rich Low_complexity Low_complexity 1 31 0 1329 199 133 9 chr4 84295977 84296324 -118032023 - MLT1B LTR MaLR 0 390 1 21 36 0 0 chr4 84297464 84297492 -118030855 + AT_rich Low_complexity Low_complexity 1 28 0 493 331 59 59 chr4 84299104 84299527 -118028820 - L3 LINE CR1 -473 1104 682 1950 151 0 0 chr4 84299539 84299824 -118028523 + AluSx SINE Alu 1 285 -27 324 70 0 0 chr4 84299824 84299867 -118028480 + (CA)n Simple_repeat Simple_repeat 2 44 0 247 304 0 25 chr4 84299888 84299967 -118028380 - L2 LINE L2 -12 3260 3184 21 0 0 0 chr4 84299967 84299988 -118028359 + AT_rich Low_complexity Low_complexity 1 21 0 1003 359 135 27 chr4 84300510 84302020 -118026327 + L2 LINE L2 304 1976 -1338 439 240 10 10 chr4 84302002 84302106 -118026241 - L2 LINE L2 0 3313 3210 * 2467 168 22 5 chr4 84302315 84302725 -118025622 + MSTB LTR MaLR 1 417 -9 2266 121 0 0 chr4 84302725 84303032 -118025315 + AluSq SINE Alu 1 307 -6 231 61 0 0 chr4 84304934 84304967 -118023380 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 23 68 0 0 chr4 84305283 84305327 -118023020 + AT_rich Low_complexity Low_complexity 1 44 0 285 309 0 0 chr4 84305353 84305421 -118022926 - L2 LINE L2 0 3313 3246 300 317 67 0 chr4 84305834 84305954 -118022393 + MER94 DNA DNA 1 128 -6 22 0 0 0 chr4 84306117 84306139 -118022208 + AT_rich Low_complexity Low_complexity 1 22 0 246 200 50 17 chr4 84306377 84306437 -118021910 - MIR SINE MIR -170 92 31 282 56 0 0 chr4 84306788 84306824 -118021523 + (CA)n Simple_repeat Simple_repeat 2 37 0 573 301 117 25 chr4 84307728 84307967 -118020380 - MIR SINE MIR 0 262 2 625 241 53 41 chr4 84308409 84308773 -118019574 - LTR16A1 LTR ERVL -17 440 3 666 264 41 12 chr4 84308918 84309090 -118019257 - MER45A DNA AcHobo -1 177 1 5090 193 76 19 chr4 84309809 84311109 -118017238 - L1 LINE L1 -834 5312 3938 7618 40 1 2 chr4 84312153 84313118 -118015229 - L1PA5 LINE L1 -2242 3904 2941 12050 46 1 0 chr4 84313118 84315377 -118012970 + L1PA5 LINE L1 3895 6152 -2 21 0 0 0 chr4 84315527 84315548 -118012799 + AT_rich Low_complexity Low_complexity 1 21 0 499 294 71 46 chr4 84315769 84315877 -118012470 - MIR SINE MIR -30 232 128 2498 97 20 3 chr4 84315877 84316226 -118012121 + THE1A LTR MaLR 1 355 0 11460 104 2 2 chr4 84316226 84317806 -118010541 + THE1A-int LTR MaLR 1 1580 0 2616 83 11 3 chr4 84317808 84318158 -118010189 + THE1A LTR MaLR 3 355 0 499 294 71 46 chr4 84318158 84318242 -118010105 - MIR SINE MIR -134 128 31 624 312 69 48 chr4 84319013 84319391 -118008956 + L2 LINE L2 2904 3289 -24 24 32 0 0 chr4 84319734 84319765 -118008582 + AT_rich Low_complexity Low_complexity 1 31 0 3457 172 19 23 chr4 84319791 84320517 -118007830 - L1MB2 LINE L1 -1 6170 5448 1471 212 10 20 chr4 84321901 84322198 -118006149 - AluJb SINE Alu -18 294 1 381 296 56 24 chr4 84322339 84322464 -118005883 - MIR SINE MIR -70 192 64 1531 226 118 56 chr4 84322763 84323263 -118005084 - MLT1H LTR MaLR 0 549 19 712 281 87 41 chr4 84323391 84324127 -118004220 - L1ME3A LINE L1 -221 5949 5176 532 183 0 29 chr4 84324455 84324559 -118003788 + AluSc SINE Alu 127 227 -82 892 366 32 11 chr4 84325480 84325942 -118002405 + L3b LINE CR1 1104 1575 -8 335 208 28 0 chr4 84327118 84327190 -118001157 - L2 LINE L2 -1449 1865 1792 2796 10 0 0 chr4 84328039 84328341 -118000006 - AluYa5 SINE Alu -2 309 8 1078 303 58 51 chr4 84328874 84329323 -117999024 - L2 LINE L2 -423 2891 2440 436 313 26 67 chr4 84329614 84329780 -117998567 + MLT1J LTR MaLR 5 157 -354 2344 94 0 7 chr4 84329780 84330088 -117998259 - AluSp SINE Alu -7 306 1 436 313 26 67 chr4 84330088 84330189 -117998158 + MLT1J LTR MaLR 157 261 -250 366 252 48 109 chr4 84330537 84330747 -117997600 + MIR SINE MIR 66 262 0 1090 335 37 15 chr4 84331719 84332181 -117996166 + L3b LINE CR1 1104 1575 -8 244 337 98 0 chr4 84332513 84332605 -117995742 - MIR SINE MIR -116 146 46 661 270 23 75 chr4 84333717 84333957 -117994390 - MIR SINE MIR -36 226 3 2386 127 18 32 chr4 84334123 84334565 -117993782 - Tigger3b DNA MER2_type -598 633 198 2377 138 3 16 chr4 84334588 84334965 -117993382 - THE1C LTR MaLR 0 375 4 2778 108 2 114 chr4 84334968 84335496 -117992851 - THE1C-int LTR MaLR 0 1580 1112 856 181 13 7 chr4 84335497 84335652 -117992695 - AluJo SINE Alu -154 158 3 1056 182 99 0 chr4 84335656 84335848 -117992499 - Tigger3b DNA MER2_type -1020 211 1 2560 128 18 0 chr4 84335849 84336249 -117992098 + L1M2 LINE L1 5382 5788 -524 516 220 0 0 chr4 84336258 84336376 -117991971 + (TA)n Simple_repeat Simple_repeat 1 118 0 283 247 47 0 chr4 84336377 84336462 -117991885 - L1MC4 LINE L1 -1339 6703 6615 264 200 0 0 chr4 84336462 84336517 -117991830 + (CATATA)n Simple_repeat Simple_repeat 1 55 0 253 253 23 0 chr4 84336517 84336604 -117991743 - L1MC4 LINE L1 -1339 6703 6615 * 256 289 0 0 chr4 84336563 84336653 -117991694 + L1MC4 LINE L1 6614 6703 -1339 253 311 0 0 chr4 84336613 84336703 -117991644 - L1MC4 LINE L1 -1339 6703 6614 * 282 160 0 0 chr4 84336704 84336754 -117991593 + (TA)n Simple_repeat Simple_repeat 1 50 0 234 300 0 0 chr4 84336755 84336845 -117991502 - L1MC4 LINE L1 -1339 6703 6614 2638 149 45 2 chr4 84336867 84337351 -117990996 + L1MA9 LINE L1 5801 6305 -7 414 293 17 0 chr4 84337407 84337523 -117990824 + MIR SINE MIR 25 142 -120 255 290 65 33 chr4 84338347 84338592 -117989755 + L1 LINE L1 4013 4265 -1881 318 303 98 79 chr4 84340823 84341252 -117987095 - L1M2 LINE L1 -5832 1017 581 539 263 21 27 chr4 84341673 84341859 -117986488 + MIR SINE MIR 28 212 -50 1321 174 50 3 chr4 84342071 84342369 -117985978 + L1MA7 LINE L1 5973 6284 -7 22 88 0 0 chr4 84342375 84342432 -117985915 + AT_rich Low_complexity Low_complexity 1 57 0 27 0 0 0 chr4 84342452 84342479 -117985868 + AT_rich Low_complexity Low_complexity 1 27 0 5302 128 14 63 chr4 84343984 84345255 -117983092 - L1PA13 LINE L1 0 6163 4920 2947 6 0 0 chr4 84345631 84345949 -117982398 + AluYb8 SINE Alu 1 318 0 26 64 0 0 chr4 84345949 84345996 -117982351 + AT_rich Low_complexity Low_complexity 1 47 0 433 282 41 22 chr4 84346922 84347098 -117981249 + MER5A DNA MER1_type 5 189 0 372 311 33 0 chr4 84347099 84347221 -117981126 + MIR SINE MIR 11 136 -126 422 198 0 12 chr4 84347561 84347642 -117980705 - MER103 DNA DNA -86 80 1 213 39 0 0 chr4 84347656 84347682 -117980665 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr4 84347743 84347765 -117980582 + AT_rich Low_complexity Low_complexity 1 22 0 2055 109 6 45 chr4 84348921 84349234 -117979113 - AluSg SINE Alu -9 301 1 503 255 6 38 chr4 84350525 84350682 -117977665 - L2 LINE L2 0 3313 3162 * 1283 253 133 46 chr4 84350678 84351220 -117977127 + L2 LINE L2 1917 2505 -809 851 254 66 64 chr4 84351205 84351614 -117976733 + L2 LINE L2 2828 3237 -76 * 599 216 4 8 chr4 84351724 84351963 -117976384 + CT-rich Low_complexity Low_complexity 1 238 0 2266 98 0 3 chr4 84352550 84352846 -117975501 - AluSg SINE Alu -15 295 1 2280 73 35 0 chr4 84352929 84353217 -117975130 - AluY SINE Alu -13 298 1 270 217 0 0 chr4 84354403 84354449 -117973898 - L2 LINE L2 -5 3267 3222 24 77 0 0 chr4 84354467 84354519 -117973828 + AT_rich Low_complexity Low_complexity 1 52 0 380 283 20 0 chr4 84354680 84354779 -117973568 + MLT1J LTR MaLR 29 129 -382 709 335 42 40 chr4 84356498 84356694 -117971653 + MLT1J LTR MaLR 1 195 -316 2454 62 0 13 chr4 84356694 84356998 -117971349 - AluY SINE Alu -11 300 1 709 335 42 40 chr4 84356998 84357273 -117971074 + MLT1J LTR MaLR 195 473 -38 1626 212 98 29 chr4 84357686 84358168 -117970179 - LTR40a LTR ERVL -2 517 3 906 268 68 61 chr4 84358348 84358777 -117969570 - L2 LINE L2 -6 3307 2876 25700 113 11 27 chr4 84359650 84364643 -117963704 + L1P3 LINE L1 8 5023 -1438 4551 121 43 27 chr4 84365072 84365839 -117962508 - MER4E LTR ERV1 0 779 1 277 328 41 8 chr4 84366868 84366990 -117961357 - L2 LINE L2 -4 3309 3184 2291 93 0 10 chr4 84368667 84368968 -117959379 + AluY SINE Alu 1 298 -13 210 321 48 0 chr4 84368981 84369065 -117959282 + L2 LINE L2 3226 3313 0 711 197 0 0 chr4 84371349 84371476 -117956871 + FLAM_A SINE Alu 1 127 -6 247 257 88 64 chr4 84371761 84372134 -117956213 - L1MC5 LINE L1 -182 7779 7398 211 167 30 0 chr4 84372157 84372223 -117956124 + (TA)n Simple_repeat Simple_repeat 1 68 0 354 293 66 50 chr4 84372425 84372623 -117955724 - L1MC5 LINE L1 -733 7228 7028 1067 218 40 54 chr4 84374077 84374523 -117953824 - MLT1D LTR MaLR -2 503 1 243 234 108 45 chr4 84374699 84374810 -117953537 + MIR SINE MIR 129 246 -16 554 253 29 53 chr4 84375689 84375859 -117952488 + MIR3 SINE MIR 30 195 -13 22 0 0 0 chr4 84376566 84376588 -117951759 + AT_rich Low_complexity Low_complexity 1 22 0 1448 231 12 29 chr4 84376860 84377202 -117951145 + MER93a LTR ERV1 67 402 0 22 35 0 0 chr4 84378370 84378399 -117949948 + AT_rich Low_complexity Low_complexity 1 29 0 1116 212 156 24 chr4 84378867 84379399 -117948948 + Charlie2 DNA MER1_type 2252 2853 -9 2115 274 186 18 chr4 84379400 84380082 -117948265 - L2 LINE L2 -2004 1310 744 1666 179 7 36 chr4 84380082 84380384 -117947963 + AluJo SINE Alu 1 293 -19 2115 274 186 18 chr4 84380384 84380458 -117947889 - L2 LINE L2 -2570 744 684 372 94 0 0 chr4 84380458 84380511 -117947836 + (CA)n Simple_repeat Simple_repeat 2 54 0 2115 274 186 18 chr4 84380511 84380795 -117947552 - L2 LINE L2 -2630 684 94 233 207 72 22 chr4 84381060 84381181 -117947166 + LTR48 LTR ERV1 466 737 -49 226 226 43 129 chr4 84381227 84381320 -117947027 - L2 LINE L2 -3215 99 15 1675 284 97 50 chr4 84381473 84382398 -117945949 + L2 LINE L2 1996 2964 -350 188 405 0 0 chr4 84433742 84433816 -117894531 + L2 LINE L2 3237 3310 -3 582 237 7 15 chr4 84433889 84434024 -117894323 + MER74A LTR ERVL 14 147 -411 908 228 104 5 chr4 84434053 84434255 -117894092 - MLT1A1 LTR MaLR -143 222 1 416 270 152 37 chr4 84434255 84434525 -117893822 - L2 LINE L2 -71 3242 2942 26 0 0 0 chr4 84435766 84435792 -117892555 + AT_rich Low_complexity Low_complexity 1 26 0 230 222 93 19 chr4 84436207 84436315 -117892032 - L1M4 LINE L1 -1749 4397 4282 440 278 116 42 chr4 84436691 84436907 -117891440 - LTR33 LTR ERVL -2 519 288 6899 65 0 6 chr4 84437867 84439214 -117889133 + L1PA6 LINE L1 4812 6154 0 281 118 59 0 chr4 84439246 84439297 -117889050 + L1P LINE L1 3205 3258 -2888 2207 250 14 97 chr4 84439312 84439745 -117888602 + L1P LINE L1 3951 4261 -1885 1793 152 40 13 chr4 84439745 84440048 -117888299 + AluSx SINE Alu 1 311 -1 2207 250 14 97 chr4 84440048 84440585 -117887762 + L1P LINE L1 4261 4841 -1305 559 255 105 40 chr4 84440711 84441138 -117887209 + L1ME3A LINE L1 4414 4868 -1278 1010 251 142 23 chr4 84441373 84441991 -117886356 + L1ME3A LINE L1 5259 5950 -220 21 0 0 0 chr4 84442219 84442240 -117886107 + AT_rich Low_complexity Low_complexity 1 21 0 1284 216 44 30 chr4 84442559 84442925 -117885422 + MLT1A2 LTR MaLR 4 374 0 1287 103 115 46 chr4 84443024 84443285 -117885062 - L1MA3 LINE L1 0 6305 6027 5084 187 33 20 chr4 84443386 84443649 -117884698 + L1MA4 LINE L1 4128 4386 -1914 1852 142 40 13 chr4 84443649 84443952 -117884395 + AluSx SINE Alu 1 311 -1 5084 187 33 20 chr4 84443952 84445904 -117882443 + L1MA4 LINE L1 4386 6300 0 3388 82 6 0 chr4 84446185 84446759 -117881588 - L1P3 LINE L1 -437 6032 5456 634 62 0 0 chr4 84446759 84446839 -117881508 + L1P3 LINE L1 335 414 -6047 6988 103 23 0 chr4 84446841 84447803 -117880544 - L1P3 LINE L1 -5476 985 2 2316 174 26 0 chr4 84448289 84448669 -117879678 + MSTA LTR MaLR 1 390 -38 2983 50 5 25 chr4 84449620 84450022 -117878325 + L1PA7 LINE L1 5761 6154 0 21 0 0 0 chr4 84450067 84450088 -117878259 + AT_rich Low_complexity Low_complexity 1 21 0 7041 111 17 15 chr4 84450736 84451803 -117876544 - MER11C LTR ERVK -2 1069 1 2157 139 0 0 chr4 84451803 84452105 -117876242 - AluSx SINE Alu -10 302 1 209 317 99 43 chr4 84452386 84452547 -117875800 + L2 LINE L2 2330 2499 -815 250 215 137 91 chr4 84452867 84453086 -117875261 - L1MC5 LINE L1 -473 7488 7260 465 263 41 14 chr4 84453162 84453376 -117874971 - L1MC4 LINE L1 -728 7233 7037 552 274 70 25 chr4 84453420 84453734 -117874613 - L1ME LINE L1 -577 5585 5258 5911 93 1 4 chr4 84454580 84455425 -117872922 + L1P LINE L1 3816 4658 -1488 37246 91 7 13 chr4 84455525 84460899 -117867448 - L1P LINE L1 -799 5347 11 3068 184 23 12 chr4 84460918 84461583 -117866764 - L1 LINE L1 -2228 3918 3247 22 0 0 0 chr4 84462418 84462440 -117865907 + AT_rich Low_complexity Low_complexity 1 22 0 309 283 114 54 chr4 84462534 84462718 -117865629 - MIR3 SINE MIR -9 199 5 1530 201 23 30 chr4 84463296 84463648 -117864699 - MLT1A2 LTR MaLR 0 505 29 624 218 5 124 chr4 84463917 84464036 -117864311 - MER45A DNA AcHobo -1403 178 91 1528 139 20 41 chr4 84464036 84464156 -117864191 + L1MB3 LINE L1 5894 6015 -168 2251 111 3 0 chr4 84464156 84464462 -117863885 - AluSq SINE Alu -6 307 1 1528 139 20 41 chr4 84464462 84464635 -117863712 + L1MB3 LINE L1 6015 6181 -2 624 218 5 124 chr4 84464635 84464717 -117863630 - MER45A DNA AcHobo -1490 91 1 2216 119 0 0 chr4 84465695 84465989 -117862358 - AluSg SINE Alu -12 298 5 2186 122 0 0 chr4 84466974 84467277 -117861070 + AluSc SINE Alu 1 303 -6 396 233 0 92 chr4 84467297 84467417 -117860930 - L2 LINE L2 -19 3294 3186 * 1650 246 80 66 chr4 84467411 84467505 -117860842 - L2 LINE L2 -1197 2117 2026 926 121 0 0 chr4 84467505 84467637 -117860710 + FLAM_C SINE Alu 1 132 -1 1650 246 80 66 chr4 84467637 84468283 -117860064 - L2 LINE L2 -1288 2026 1367 272 303 18 48 chr4 84468491 84468656 -117859691 + L1MC4a LINE L1 5742 5901 -1907 276 250 120 19 chr4 84469381 84469489 -117858858 + L2 LINE L2 1913 2031 -1283 294 322 139 17 chr4 84469509 84469739 -117858608 + L2 LINE L2 2234 2491 -823 234 235 112 31 chr4 84470239 84470337 -117858010 + L2 LINE L2 1926 2031 -1283 308 339 135 13 chr4 84470357 84470587 -117857760 + L2 LINE L2 2234 2491 -823 239 341 0 0 chr4 84470677 84470765 -117857582 + MIR SINE MIR 101 188 -74 207 139 0 0 chr4 84470868 84470904 -117857443 + (CA)n Simple_repeat Simple_repeat 1 36 0 224 186 0 57 chr4 84472067 84472137 -117856210 + CT-rich Low_complexity Low_complexity 4 69 0 189 0 0 0 chr4 84472307 84472328 -117856019 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 270 0 0 0 chr4 84472327 84472357 -117855990 + (TG)n Simple_repeat Simple_repeat 2 31 0 208 337 24 0 chr4 84472517 84472600 -117855747 + L2 LINE L2 3188 3272 0 22 35 0 0 chr4 84473035 84473064 -117855283 + AT_rich Low_complexity Low_complexity 1 29 0 1692 145 60 7 chr4 84473130 84473412 -117854935 + AluSx SINE Alu 1 297 -15 29 60 0 0 chr4 84474880 84474930 -117853417 + AT_rich Low_complexity Low_complexity 1 50 0 41 48 0 0 chr4 84475560 84475622 -117852725 + AT_rich Low_complexity Low_complexity 1 62 0 21 71 0 0 chr4 84476095 84476137 -117852210 + AT_rich Low_complexity Low_complexity 1 42 0 1491 106 5 0 chr4 84476142 84476359 -117851988 + L1PB1 LINE L1 5934 6151 0 23 101 0 0 chr4 84476359 84476438 -117851909 + AT_rich Low_complexity Low_complexity 1 79 0 1767 182 7 3 chr4 84476576 84477001 -117851346 - AluJo SINE Alu 0 428 3 366 42 0 0 chr4 84477043 84477091 -117851256 + (TG)n Simple_repeat Simple_repeat 1 48 0 28 61 0 0 chr4 84477628 84477677 -117850670 + AT_rich Low_complexity Low_complexity 1 49 0 198 357 157 29 chr4 84478421 84478631 -117849716 + L2 LINE L2 2245 2481 -833 275 274 84 21 chr4 84478889 84478984 -117849363 + Charlie7 DNA MER1_type 1 101 -2511 967 213 52 87 chr4 84479968 84480254 -117848093 - AluJo SINE Alu -36 276 1 22 0 0 0 chr4 84480266 84480288 -117848059 + AT_rich Low_complexity Low_complexity 1 22 0 10674 86 2 4 chr4 84481572 84483908 -117844439 - L1PA7 LINE L1 -8 6146 3816 26 30 0 0 chr4 84485350 84485383 -117842964 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr4 84485450 84485482 -117842865 + AT_rich Low_complexity Low_complexity 1 32 0 189 74 0 0 chr4 84485602 84485629 -117842718 + (TA)n Simple_repeat Simple_repeat 1 27 0 399 339 74 32 chr4 84487150 84487433 -117840914 - LTR16B LTR ERVL -131 333 39 303 299 163 71 chr4 84487461 84487885 -117840462 - L1MC4a LINE L1 -1299 6509 6047 1039 301 53 7 chr4 84487943 84488379 -117839968 - L1MC4a LINE L1 -1879 5929 5474 * 10510 204 22 3 chr4 84488360 84490649 -117837698 - L1 LINE L1 -1671 5894 3563 717 164 0 0 chr4 84490649 84490806 -117837541 - AluSg/x SINE Alu 0 329 173 1110 149 0 6 chr4 84490865 84491039 -117837308 - AluSq SINE Alu -140 173 1 2813 113 40 4 chr4 84491039 84491515 -117836832 - L1 LINE L1 -3997 3568 3076 * 13593 176 29 4 chr4 84491514 84493949 -117834398 - L1 LINE L1 -5054 2511 17 512 250 204 74 chr4 84494048 84494400 -117833947 + MLT1G1 LTR MaLR 158 595 0 251 325 32 8 chr4 84494400 84494523 -117833824 - L1M4 LINE L1 -2244 3902 3777 349 321 38 34 chr4 84494536 84494801 -117833546 - L1M4 LINE L1 -2399 3747 3482 15566 118 31 21 chr4 84494850 84497466 -117830881 + LOR1-int LTR ERV1 2750 5391 -2729 10474 188 36 16 chr4 84497467 84500350 -117827997 + L1PA14 LINE L1 3260 6161 0 1451 224 7 7 chr4 84500370 84500656 -117827691 + AluJo SINE Alu 7 292 -20 2149 95 7 10 chr4 84501303 84501597 -117826750 + AluSc SINE Alu 1 293 -16 342 67 0 0 chr4 84502544 84502589 -117825758 + (TG)n Simple_repeat Simple_repeat 2 46 0 229 250 132 0 chr4 84503082 84503158 -117825189 + L2 LINE L2 3187 3272 0 28 0 0 0 chr4 84503248 84503276 -117825071 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 84503464 84503486 -117824861 + AT_rich Low_complexity Low_complexity 1 22 0 487 252 17 0 chr4 84503730 84503849 -117824498 - MER103 DNA DNA -43 123 3 334 421 48 48 chr4 84503973 84504529 -117823818 + L2 LINE L2 2503 3054 -218 5183 152 13 18 chr4 84504856 84506480 -117821867 - L1PA16 LINE L1 -15 6802 5186 2062 171 81 2 chr4 84506480 84506877 -117821470 - MSTA LTR MaLR 0 428 1 5183 152 13 18 chr4 84506877 84507142 -117821205 - L1PA16 LINE L1 -1631 5186 4921 7878 270 64 33 chr4 84507174 84510566 -117817781 - L1PA16 LINE L1 -2030 4767 1245 382 306 19 19 chr4 84510720 84510880 -117817467 - L1PA16 LINE L1 -6175 612 453 * 777 317 4 13 chr4 84510875 84511102 -117817245 - L1PA16 LINE L1 -6561 226 2 1008 244 4 38 chr4 84511114 84511382 -117816965 - MLT2B3 LTR ERVL -86 461 216 21 0 0 0 chr4 84511445 84511466 -117816881 + AT_rich Low_complexity Low_complexity 1 21 0 234 252 170 30 chr4 84511622 84511757 -117816590 + L2 LINE L2 3113 3266 -47 573 343 82 45 chr4 84513198 84513660 -117814687 - LTR67 LTR ERVL -8 549 71 333 151 0 0 chr4 84513660 84513713 -117814634 + MER74B LTR ERVL 1 53 -569 1506 213 36 63 chr4 84513774 84514216 -117814131 + MER74B LTR ERVL 193 622 0 3531 125 55 15 chr4 84514587 84515237 -117813110 - Tigger3(Golem) DNA MER2_type 0 3029 2354 820 184 48 58 chr4 84515226 84515432 -117812915 - Tigger3(Golem) DNA MER2_type -2825 204 1 * 5152 170 46 14 chr4 84515480 84517023 -117811324 - L1MA8 LINE L1 -19 6272 4681 1023 334 75 13 chr4 84517122 84517586 -117810761 - L3 LINE CR1 -57 1520 1028 209 364 67 26 chr4 84517736 84517931 -117810416 - L3 LINE CR1 -1184 393 191 22 0 0 0 chr4 84519055 84519077 -117809270 + AT_rich Low_complexity Low_complexity 1 22 0 10573 177 16 58 chr4 84521632 84521855 -117806492 - L1MA3 LINE L1 -259 6046 5815 1823 161 0 10 chr4 84521855 84522166 -117806181 - AluSg SINE Alu -2 308 1 10573 177 16 58 chr4 84522166 84524682 -117803665 - L1MA3 LINE L1 -490 5815 3197 897 196 0 0 chr4 84524682 84524845 -117803502 - AluJb SINE Alu -17 295 133 10573 177 16 58 chr4 84524845 84525212 -117803135 - L1MA3 LINE L1 -3108 3197 2816 2775 39 3 0 chr4 84525212 84525549 -117802798 + L1PA5 LINE L1 5817 6154 0 189 0 0 0 chr4 84525549 84525570 -117802777 + (TA)n Simple_repeat Simple_repeat 2 22 0 10573 177 16 58 chr4 84525570 84525615 -117802732 - L1MA3 LINE L1 -3384 2921 2876 2293 102 0 0 chr4 84526749 84527052 -117801295 - AluSc SINE Alu -6 303 1 183 329 24 94 chr4 84527451 84527536 -117800811 - L2 LINE L2 -62 3210 3132 1172 241 104 27 chr4 84528354 84528798 -117799549 - MLT1J LTR MaLR -1 510 33 248 257 14 14 chr4 84529394 84529464 -117798883 - LTR67 LTR ERVL 0 557 488 1079 289 60 9 chr4 84530105 84530420 -117797927 + MLT1I LTR MaLR 63 393 -16 331 67 17 17 chr4 84530781 84530841 -117797506 + (TA)n Simple_repeat Simple_repeat 2 61 0 313 391 56 19 chr4 84531003 84531218 -117797129 + L2 LINE L2 2521 2743 -571 326 321 90 30 chr4 84531662 84531796 -117796551 + L2 LINE L2 3123 3264 -8 270 287 106 58 chr4 84534137 84534325 -117794022 - L2 LINE L2 0 3313 3117 328 301 54 60 chr4 84535368 84535534 -117792813 + MIR SINE MIR 3 167 -95 22 56 0 0 chr4 84535535 84535571 -117792776 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chr4 84535596 84535626 -117792721 + AT_rich Low_complexity Low_complexity 1 30 0 330 345 82 15 chr4 84536735 84536941 -117791406 + MIR SINE MIR 20 239 -23 1593 177 4 0 chr4 84536942 84537213 -117791134 - AluJb SINE Alu -10 302 31 1060 292 61 36 chr4 84537260 84537702 -117790645 - LTR16A1 LTR ERVL -4 453 1 979 276 24 4 chr4 84538127 84538373 -117789974 - MIR SINE MIR -3 259 9 482 249 243 6 chr4 84538500 84538669 -117789678 - MIR SINE MIR -41 221 13 456 288 123 42 chr4 84538737 84539521 -117788826 + L1ME3A LINE L1 5044 5881 -289 444 258 58 8 chr4 84539585 84539705 -117788642 + MIR SINE MIR 108 233 -29 2153 101 3 7 chr4 84539709 84540006 -117788341 + AluSg SINE Alu 1 296 -14 2423 8 0 0 chr4 84540464 84540732 -117787615 - AluYa5 SINE Alu 0 311 44 1436 236 95 4 chr4 84542842 84543346 -117785001 - L1M4 LINE L1 -2759 3387 2838 1911 144 46 27 chr4 84543454 84543822 -117784525 - THE1C LTR MaLR 0 375 1 197 65 32 0 chr4 84544018 84544049 -117784298 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 388 288 40 40 chr4 84544058 84544235 -117784112 - HAL1 LINE L1 -1556 951 775 260 143 0 0 chr4 84544695 84544751 -117783596 - L1M4 LINE L1 -1095 5051 4996 224 185 0 46 chr4 84545426 84545491 -117782856 + GA-rich Low_complexity Low_complexity 3 64 0 563 340 161 33 chr4 84545521 84545944 -117782403 - L3 LINE CR1 -4 1573 1097 2257 281 69 15 chr4 84545947 84546870 -117781477 - L1ME3A LINE L1 -7 6163 5184 447 261 5 65 chr4 84546871 84547051 -117781296 - L1ME3A LINE L1 -981 5165 4998 1914 152 3 0 chr4 84547051 84547340 -117781007 - AluSx SINE Alu -19 293 4 447 261 5 65 chr4 84547340 84547374 -117780973 - L1ME3A LINE L1 -1148 4998 4964 700 294 78 0 chr4 84547378 84547582 -117780765 - L2 LINE L2 -979 2335 2116 464 330 115 65 chr4 84547636 84548203 -117780144 - L3 LINE CR1 -523 1054 460 180 0 0 0 chr4 84550044 84550064 -117778283 + (TTG)n Simple_repeat Simple_repeat 2 21 0 504 389 20 0 chr4 84550150 84550394 -117777953 + MIR SINE MIR 14 262 0 209 315 123 0 chr4 84550462 84550535 -117777812 - MIR3 SINE MIR -29 179 98 2694 109 45 2 chr4 84551143 84551547 -117776800 + L1PA13 LINE L1 5701 6121 -42 1473 167 3 7 chr4 84551648 84551936 -117776411 - L1 LINE L1 -3089 3057 2771 719 282 29 10 chr4 84553013 84553222 -117775125 - MIR SINE MIR 0 262 50 3062 233 50 55 chr4 84553355 84554571 -117773776 - L1MD2 LINE L1 -15 6738 5529 443 263 63 34 chr4 84554571 84554746 -117773601 - L1MD2 LINE L1 -6343 197 18 21 0 0 0 chr4 84555007 84555028 -117773319 + AT_rich Low_complexity Low_complexity 1 21 0 272 289 141 26 chr4 84557123 84557279 -117771068 - MIR SINE MIR -5 257 84 * 607 346 106 17 chr4 84557266 84557670 -117770677 - L3 LINE CR1 -662 915 476 188 300 20 0 chr4 84558424 84558474 -117769873 + L2 LINE L2 3219 3269 -3 2171 67 3 18 chr4 84558893 84559178 -117769169 - AluY SINE Alu -30 281 1 354 348 0 9 chr4 84561934 84562049 -117766298 - MIR3 SINE MIR -3 205 92 38566 41 26 2 chr4 84562285 84567121 -117761226 + L1P LINE L1 1 4956 -1190 190 262 0 0 chr4 84567239 84567281 -117761066 - MIR SINE MIR -61 147 106 2884 107 40 5 chr4 84567895 84568342 -117760005 + L1PA13 LINE L1 5701 6163 0 22 0 0 0 chr4 84568490 84568512 -117759835 + AT_rich Low_complexity Low_complexity 1 22 0 194 208 19 0 chr4 84569490 84569543 -117758804 + (TA)n Simple_repeat Simple_repeat 2 55 0 375 329 51 17 chr4 84569639 84569876 -117758471 + L1ME LINE L1 5572 5816 -305 379 239 11 0 chr4 84571837 84571929 -117756418 - L1MC4 LINE L1 0 8042 7950 2079 103 3 14 chr4 84572364 84572655 -117755692 + AluSg SINE Alu 1 288 -22 421 270 20 34 chr4 84572759 84572907 -117755440 - L1MC4a LINE L1 -1892 5916 5771 197 132 26 0 chr4 84573108 84573146 -117755201 + GA-rich Low_complexity Low_complexity 2 40 0 22 0 0 0 chr4 84573320 84573342 -117755005 + AT_rich Low_complexity Low_complexity 1 22 0 263 305 9 9 chr4 84573518 84573623 -117754724 + GA-rich Low_complexity Low_complexity 1 105 0 222 258 16 0 chr4 84574183 84574245 -117754102 + (TA)n Simple_repeat Simple_repeat 1 63 0 285 29 0 0 chr4 84574971 84575005 -117753342 + (TG)n Simple_repeat Simple_repeat 1 34 0 22 35 0 0 chr4 84575636 84575665 -117752682 + AT_rich Low_complexity Low_complexity 1 29 0 210 267 33 78 chr4 84576040 84576130 -117752217 - L3 LINE CR1 -1036 541 456 400 268 140 24 chr4 84579103 84579267 -117749080 - MIR SINE MIR -33 229 47 22 0 0 0 chr4 84581031 84581053 -117747294 + AT_rich Low_complexity Low_complexity 1 22 0 966 169 0 23 chr4 84581639 84581811 -117746536 - FRAM SINE Alu -9 167 1 320 262 28 0 chr4 84582456 84582563 -117745784 + (TA)n Simple_repeat Simple_repeat 1 110 0 608 241 44 6 chr4 84582572 84582730 -117745617 - MIR3 SINE MIR -25 183 20 24 85 0 0 chr4 84582958 84583017 -117745330 + AT_rich Low_complexity Low_complexity 1 59 0 24 32 0 0 chr4 84584930 84584961 -117743386 + AT_rich Low_complexity Low_complexity 1 31 0 275 312 101 37 chr4 84586859 84587048 -117741299 + MIR SINE MIR 21 221 -41 227 310 65 45 chr4 84587464 84587619 -117740728 - L3 LINE CR1 -310 1267 1110 234 324 78 39 chr4 84587686 84587788 -117740559 - L2 LINE L2 -13 3300 3195 23 33 0 0 chr4 84587788 84587818 -117740529 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 84588258 84588286 -117740061 + AT_rich Low_complexity Low_complexity 1 28 0 213 240 0 20 chr4 84588383 84588433 -117739914 - L3 LINE CR1 -486 1091 1043 14360 212 49 21 chr4 84589547 84591377 -117736970 + L1MA8 LINE L1 7 1784 -5467 195 100 0 0 chr4 84591377 84591407 -117736940 + (TG)n Simple_repeat Simple_repeat 2 31 0 14360 212 49 21 chr4 84591407 84593122 -117735225 + L1MA8 LINE L1 1784 3449 -3802 234 0 0 0 chr4 84593122 84593148 -117735199 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 14360 212 49 21 chr4 84593148 84595706 -117732641 + L1MA8 LINE L1 3449 7250 -1 1838 158 36 10 chr4 84595708 84596012 -117732335 + AluSx SINE Alu 1 312 0 334 294 47 58 chr4 84596046 84596322 -117732025 + L1MEd LINE L1 898 1170 -4949 22 0 0 0 chr4 84596613 84596635 -117731712 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 84597175 84597196 -117731151 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 84597339 84597364 -117730983 + AT_rich Low_complexity Low_complexity 1 25 0 1217 174 110 55 chr4 84598097 84598442 -117729905 + MLT1A1 LTR MaLR 2 365 0 22 0 0 0 chr4 84598553 84598575 -117729772 + AT_rich Low_complexity Low_complexity 1 22 0 430 237 23 46 chr4 84598684 84598815 -117729532 - L2 LINE L2 -2 3311 3184 1865 84 28 52 chr4 84599426 84599738 -117728609 + AluSg SINE Alu 1 305 0 2059 102 17 3 chr4 84600246 84600541 -117727806 - AluSg SINE Alu -11 299 1 423 331 94 6 chr4 84600558 84600718 -117727629 + MIR SINE MIR 3 176 -86 247 169 77 46 chr4 84602420 84602485 -117725862 - 7SK RNA RNA -69 124 58 186 333 157 10 chr4 84602763 84602865 -117725482 - MIR3 SINE MIR -15 193 77 861 233 99 0 chr4 84602944 84603146 -117725201 + MER58A DNA MER1_type 1 222 -2 12831 64 8 4 chr4 84603354 84605819 -117722528 + L1PA3 LINE L1 3686 6155 0 1462 182 91 7 chr4 84607787 84608062 -117720285 - AluJb SINE Alu -14 298 1 2140 95 24 3 chr4 84608133 84608429 -117719918 + AluSg SINE Alu 1 302 -8 243 163 25 62 chr4 84608587 84608667 -117719680 + A-rich Low_complexity Low_complexity 4 80 0 310 351 60 35 chr4 84608683 84609023 -117719324 - L2 LINE L2 -113 3200 2799 882 122 0 0 chr4 84609176 84609299 -117719048 + FLAM_C SINE Alu 2 124 -19 239 264 104 28 chr4 84610214 84610320 -117718027 + MIR SINE MIR 40 153 -109 368 220 180 0 chr4 84610413 84610513 -117717834 + L2 LINE L2 3154 3271 -1 190 276 35 17 chr4 84610594 84610652 -117717695 - L2 LINE L2 0 3313 3255 2121 155 19 16 chr4 84610717 84611091 -117717256 - THE1C LTR MaLR 0 375 1 693 267 167 0 chr4 84612258 84612479 -117715868 + MIR SINE MIR 2 259 -3 193 362 43 50 chr4 84612531 84612672 -117715675 - L2 LINE L2 -882 2432 2293 32 0 0 0 chr4 84612880 84612912 -117715435 + AT_rich Low_complexity Low_complexity 1 32 0 349 243 297 16 chr4 84613032 84613217 -117715130 - MIR SINE MIR -24 238 2 26 0 0 0 chr4 84614228 84614254 -117714093 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr4 84616796 84616825 -117711522 + AT_rich Low_complexity Low_complexity 1 29 0 831 273 74 62 chr4 84617250 84617668 -117710679 - MLT1J1 LTR MaLR -3 443 21 220 231 19 0 chr4 84618740 84618792 -117709555 + (TATG)n Simple_repeat Simple_repeat 4 56 0 1626 241 23 18 chr4 84619303 84619689 -117708658 + Cheshire DNA MER1_type 1 388 -2032 456 254 172 0 chr4 84622031 84622165 -117706182 + MIR SINE MIR 1 157 -105 195 258 118 86 chr4 84622468 84622561 -117705786 + MIR3 SINE MIR 9 104 -104 234 91 0 0 chr4 84622581 84622614 -117705733 + (T)n Simple_repeat Simple_repeat 1 33 0 2120 135 116 127 chr4 84623015 84623636 -117704711 + LTR18B LTR ERVL 1 614 0 478 240 23 64 chr4 84623659 84623830 -117704517 - MIR SINE MIR -98 164 1 260 225 127 0 chr4 84625068 84625139 -117703208 - L2 LINE L2 -1 3271 3192 455 270 250 15 chr4 84625662 84625866 -117702481 - MIR SINE MIR -7 255 4 181 325 88 38 chr4 84628392 84628472 -117699875 - MIR SINE MIR -111 151 68 393 322 86 38 chr4 84629133 84629425 -117698922 - L2 LINE L2 -3 3310 3005 235 331 126 0 chr4 84629779 84629906 -117698441 - MIR SINE MIR -16 246 104 228 147 67 67 chr4 84630924 84630999 -117697348 - MER3 DNA MER1_type -25 184 110 246 70 28 0 chr4 84631849 84631890 -117696457 - MLT2A2 LTR ERVL -7 446 411 267 31 0 0 chr4 84631902 84631934 -117696413 + (TG)n Simple_repeat Simple_repeat 1 32 0 1485 177 7 3 chr4 84632051 84632351 -117695996 + L1 LINE L1 3287 3587 -2559 21 0 0 0 chr4 84632356 84632377 -117695970 + AT_rich Low_complexity Low_complexity 1 21 0 7428 23 1 0 chr4 84632379 84633247 -117695100 - L1PA3 LINE L1 -4 6151 5283 808 342 40 3 chr4 84633351 84633652 -117694695 - LTR16A LTR ERVL -123 327 16 22 88 0 0 chr4 84634128 84634185 -117694162 + AT_rich Low_complexity Low_complexity 1 57 0 24 85 0 0 chr4 84634587 84634646 -117693701 + AT_rich Low_complexity Low_complexity 1 59 0 240 35 0 0 chr4 84634778 84634807 -117693540 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 444 37 0 0 chr4 84634806 84634860 -117693487 + (TG)n Simple_repeat Simple_repeat 1 54 0 1003 225 59 5 chr4 84635119 84635341 -117693006 + MLT1F1 LTR MaLR 333 566 -1 194 0 39 0 chr4 84635732 84635758 -117692589 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 317 75 19 0 chr4 84636602 84636655 -117691692 + (CA)n Simple_repeat Simple_repeat 1 54 0 243 235 29 29 chr4 84638952 84639020 -117689327 + MIR SINE MIR 77 144 -64 311 311 66 44 chr4 84641268 84641451 -117686896 - MIR SINE MIR 0 262 76 335 216 9 86 chr4 84641455 84641518 -117686829 - MLT1A1 LTR MaLR 0 624 572 1657 191 7 3 chr4 84641518 84641811 -117686536 - AluJb SINE Alu -16 296 3 335 216 9 86 chr4 84641811 84641863 -117686484 - MLT1A1 LTR MaLR -52 572 518 522 358 35 13 chr4 84642266 84642495 -117685852 - MIR SINE MIR -1 261 28 1442 209 28 39 chr4 84643007 84643365 -117684982 - MLT1A1 LTR MaLR -11 354 1 218 254 68 0 chr4 84644053 84644112 -117684235 + MIR SINE MIR 92 154 -108 13126 156 76 27 chr4 84644732 84647406 -117680941 - L1 LINE L1 -3767 3798 990 28 29 0 0 chr4 84648081 84648116 -117680231 + AT_rich Low_complexity Low_complexity 1 35 0 227 261 42 84 chr4 84648150 84648292 -117680055 - L1ME4a LINE L1 -104 6017 5882 207 224 0 20 chr4 84648676 84648725 -117679622 + (CATATA)n Simple_repeat Simple_repeat 6 53 0 319 245 157 19 chr4 84648730 84648946 -117679401 - HAL1 LINE L1 -1166 1341 1096 1699 206 67 34 chr4 84651306 84651720 -117676627 - MLT1C LTR MaLR -2 465 33 249 33 0 0 chr4 84651720 84651750 -117676597 + (TG)n Simple_repeat Simple_repeat 2 31 0 1699 206 67 34 chr4 84651750 84651781 -117676566 - MLT1C LTR MaLR -434 33 5 3776 186 19 11 chr4 84652010 84652924 -117675423 + L1MA9 LINE L1 4612 5538 -743 281 341 32 0 chr4 84652938 84653061 -117675286 + LTR67 LTR ERVL 431 557 0 3559 176 67 11 chr4 84653233 84653834 -117674513 + L1MA9 LINE L1 5525 6177 -135 261 0 0 0 chr4 84653834 84653863 -117674484 + (CA)n Simple_repeat Simple_repeat 1 29 0 3559 176 67 11 chr4 84653863 84654004 -117674343 + L1MA9 LINE L1 6177 6309 -3 21 36 0 0 chr4 84654744 84654772 -117673575 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 84654881 84654909 -117673438 + AT_rich Low_complexity Low_complexity 1 28 0 9141 158 17 3 chr4 84655202 84657775 -117670572 - L1MA2 LINE L1 -139 6165 3555 1942 43 0 4 chr4 84657755 84658008 -117670339 - L1P LINE L1 -923 5223 4972 * 1228 278 122 30 chr4 84658114 84658704 -117669643 + L2 LINE L2 1895 2538 -776 928 313 75 47 chr4 84658699 84659058 -117669289 + L2 LINE L2 2805 3184 -129 * 2119 127 0 0 chr4 84659058 84659381 -117668966 + AluSx SINE Alu 1 323 0 928 313 75 47 chr4 84659381 84659515 -117668832 + L2 LINE L2 3184 3313 0 281 372 60 22 chr4 84659606 84659789 -117668558 - L2 LINE L2 -1412 1902 1713 1045 189 5 5 chr4 84659992 84660177 -117668170 - MER5A DNA MER1_type -2 187 3 306 122 20 0 chr4 84661062 84661111 -117667236 + L2 LINE L2 3262 3311 -2 483 361 139 31 chr4 84661210 84661692 -117666655 + L2 LINE L2 2201 2734 -580 24 32 0 0 chr4 84661820 84661851 -117666496 + AT_rich Low_complexity Low_complexity 1 31 0 931 101 0 14 chr4 84662143 84662282 -117666065 - AluSg/x SINE Alu 0 312 176 4680 201 11 14 chr4 84662285 84663211 -117665136 - L1M1 LINE L1 -6642 923 1 390 309 56 0 chr4 84663286 84663412 -117664935 - L2 LINE L2 -2 3311 3179 998 82 0 22 chr4 84664021 84664155 -117664192 + AluSq/x SINE Alu 3 133 -180 212 231 31 0 chr4 84664228 84664293 -117664054 + (TA)n Simple_repeat Simple_repeat 1 67 0 1164 46 7 13 chr4 84664602 84664754 -117663593 + L1PA8 LINE L1 6020 6170 -2 332 258 71 39 chr4 84666024 84666179 -117662168 - MIR SINE MIR -6 256 97 2599 84 55 24 chr4 84666476 84666857 -117661490 - MLT2A2 LTR ERVL -60 393 1 197 414 0 0 chr4 84668727 84668814 -117659533 - MIR SINE MIR -150 112 26 386 272 0 0 chr4 84669259 84669362 -117658985 - Charlie5 DNA MER1_type -27 2585 2483 226 178 14 41 chr4 84669379 84669452 -117658895 + (TTATA)n Simple_repeat Simple_repeat 4 74 0 786 198 66 33 chr4 84669462 84669534 -117658813 - L1MB3 LINE L1 -3 6180 6112 1190 158 177 43 chr4 84669534 84669856 -117658491 - MLT1A1 LTR MaLR 0 365 1 786 198 66 33 chr4 84669856 84669995 -117658352 - L1MB3 LINE L1 -71 6112 5962 21 82 0 0 chr4 84671079 84671128 -117657219 + AT_rich Low_complexity Low_complexity 1 49 0 29 28 0 0 chr4 84671619 84671655 -117656692 + AT_rich Low_complexity Low_complexity 1 36 0 282 291 12 35 chr4 84671906 84671992 -117656355 + MER91C DNA MER1_type 51 134 -6 380 309 72 33 chr4 84672503 84672684 -117655663 - MER5A DNA MER1_type -1 188 1 220 276 172 55 chr4 84672701 84672846 -117655501 - MER5B DNA MER1_type -16 162 1 294 327 18 0 chr4 84673200 84673310 -117655037 + MIR SINE MIR 151 262 0 209 331 113 33 chr4 84673613 84673764 -117654583 + L2 LINE L2 2812 2974 -298 4317 184 27 12 chr4 84674090 84674951 -117653396 - L1MB3 LINE L1 -14 6169 5296 1669 158 11 0 chr4 84675051 84675336 -117653011 + L1PA13 LINE L1 5873 6160 -3 574 173 19 0 chr4 84675425 84675529 -117652818 - L1ME LINE L1 -544 5622 5517 276 216 14 0 chr4 84675543 84675617 -117652730 - L1ME LINE L1 -3157 2989 2915 439 200 0 0 chr4 84675628 84675703 -117652644 + LTR32 LTR ERVL 278 352 -119 410 149 0 14 chr4 84675848 84675922 -117652425 + LTR32 LTR ERVL 317 389 -82 1400 305 72 11 chr4 84675943 84676481 -117651866 + L1MEc LINE L1 118 688 -5708 2257 271 79 30 chr4 84676648 84677309 -117651038 + L1MEc LINE L1 706 1446 -4950 1957 164 51 8 chr4 84677309 84677682 -117650665 - MLT1B LTR MaLR 0 390 2 2257 271 79 30 chr4 84677682 84678142 -117650205 + L1MEc LINE L1 1446 1882 -4514 2382 86 3 6 chr4 84678166 84678480 -117649867 + AluSq SINE Alu 1 313 0 1316 202 31 24 chr4 84678482 84678649 -117649698 + L1ME LINE L1 5133 5297 -869 2403 53 7 3 chr4 84678649 84678949 -117649398 + AluY SINE Alu 1 301 -10 1316 202 31 24 chr4 84678949 84679204 -117649143 + L1ME LINE L1 5297 5565 -601 2516 108 16 0 chr4 84679305 84679684 -117648663 - L1MA6 LINE L1 -7 6293 5909 475 311 72 30 chr4 84679691 84679926 -117648421 - HAL1 LINE L1 -485 2022 1778 563 211 0 0 chr4 84679955 84680059 -117648288 + Tigger3(Golem) DNA MER2_type 5 108 -2921 * 2600 104 65 22 chr4 84680050 84680513 -117647834 + Tigger3(Golem) DNA MER2_type 2277 2759 -270 1304 199 4 32 chr4 84680513 84680794 -117647553 - AluJo SINE Alu -1 311 39 1039 128 256 0 chr4 84680794 84680997 -117647350 + Tigger3(Golem) DNA MER2_type 2754 3008 -21 1936 151 0 3 chr4 84681097 84681388 -117646959 - AluJb SINE Alu -20 292 3 594 284 142 0 chr4 84681558 84681720 -117646627 - MIR SINE MIR -2 260 76 244 250 125 55 chr4 84682023 84682151 -117646196 - LTR33 LTR ERVL -364 157 21 224 295 33 0 chr4 84682169 84682230 -117646117 - MIR SINE MIR -197 65 3 494 252 57 0 chr4 84682862 84682985 -117645362 - L2 LINE L2 -4 3309 3180 188 400 70 0 chr4 84683193 84683308 -117645039 + L2 LINE L2 3140 3262 -10 745 288 35 41 chr4 84683626 84684003 -117644344 - L2 LINE L2 -248 3065 2690 260 24 0 0 chr4 84684126 84684167 -117644180 + AluY SINE Alu 260 300 0 735 234 77 58 chr4 84684201 84684462 -117643885 - MLT1F LTR MaLR -276 266 1 195 393 35 14 chr4 84685047 84685192 -117643155 - L2 LINE L2 -728 2586 2439 29 0 0 0 chr4 84685803 84685832 -117642515 + AT_rich Low_complexity Low_complexity 1 29 0 204 40 0 0 chr4 84686027 84686052 -117642295 + (TAA)n Simple_repeat Simple_repeat 1 25 0 411 293 179 14 chr4 84686071 84686283 -117642064 - MIR SINE MIR -2 260 14 23 54 0 0 chr4 84686428 84686465 -117641882 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 84687270 84687305 -117641042 + AT_rich Low_complexity Low_complexity 1 35 0 923 295 101 66 chr4 84687521 84688505 -117639842 + HAL1 LINE L1 3 1020 -1487 852 121 0 0 chr4 84688509 84688625 -117639722 + AluSq/x SINE Alu 1 116 -197 7336 35 9 0 chr4 84688726 84690192 -117638155 + L1PA4 LINE L1 4679 6152 -3 5508 46 1 0 chr4 84690197 84690867 -117637480 + L1PA5 LINE L1 5476 6146 -8 26 0 0 0 chr4 84690867 84690893 -117637454 + AT_rich Low_complexity Low_complexity 1 26 0 492 291 66 28 chr4 84691378 84691591 -117636756 - MIR SINE MIR -40 222 2 22 35 0 0 chr4 84692392 84692421 -117635926 + AT_rich Low_complexity Low_complexity 1 29 0 234 274 206 0 chr4 84692793 84692895 -117635452 - L2 LINE L2 -1 3312 3190 6600 61 30 2 chr4 84693165 84694629 -117633718 + L1PA7 LINE L1 4652 6141 -13 29 28 0 0 chr4 84694865 84694901 -117633446 + AT_rich Low_complexity Low_complexity 1 36 0 2092 210 24 33 chr4 84695159 84695669 -117632678 + MLT1D LTR MaLR 1 505 0 394 211 81 0 chr4 84696086 84696196 -117632151 - MLT1D LTR MaLR 0 467 273 634 256 39 17 chr4 84696226 84696406 -117631941 - MLT1D LTR MaLR -321 184 1 231 304 0 0 chr4 84696515 84696571 -117631776 + MER5A DNA MER1_type 128 183 -6 1821 61 73 0 chr4 84696573 84696819 -117631528 + AluY SINE Alu 44 307 -4 318 224 172 17 chr4 84697502 84697618 -117630729 - MIR SINE MIR -7 255 122 1406 64 21 5 chr4 84697865 84698052 -117630295 - MLT2A1 LTR ERVL -254 190 1 23803 81 13 1 chr4 84698053 84703583 -117624764 - HERVL-A1 LTR ERVL -1 5653 1 276 125 0 21 chr4 84703583 84703631 -117624716 - MLT2A1 LTR ERVL 0 414 368 5796 228 40 22 chr4 84703760 84704078 -117624269 - L1 LINE L1 -942 5440 5129 2000 171 97 10 chr4 84704078 84704471 -117623876 - MSTA LTR MaLR 0 428 2 5796 228 40 22 chr4 84704471 84705766 -117622581 - L1 LINE L1 -1253 5129 3798 * 10115 197 50 18 chr4 84705763 84708810 -117619537 - L1 LINE L1 -3044 3338 19 32 43 0 0 chr4 84708932 84708978 -117619369 + AT_rich Low_complexity Low_complexity 1 46 0 492 316 32 0 chr4 84709039 84709194 -117619153 + MIR SINE MIR 54 213 -49 316 393 18 18 chr4 84709296 84709459 -117618888 - MIR SINE MIR -50 212 50 235 358 62 25 chr4 84709517 84709791 -117618556 - L2 LINE L2 -463 2851 2568 191 268 37 37 chr4 84710233 84710315 -117618032 - L3 LINE CR1 -1412 165 84 23 33 0 0 chr4 84712038 84712068 -117616279 + AT_rich Low_complexity Low_complexity 1 30 0 382 246 24 63 chr4 84712737 84712863 -117615484 + L2 LINE L2 3189 3309 -4 190 343 0 0 chr4 84712940 84713010 -117615337 + L2 LINE L2 3192 3261 -11 1628 137 0 114 chr4 84713421 84713771 -117614576 - AluJo SINE Alu -2 310 1 22 0 0 0 chr4 84713876 84713898 -117614449 + AT_rich Low_complexity Low_complexity 1 22 0 1573 169 35 3 chr4 84714262 84714701 -117613646 + L1M4c LINE L1 2173 2625 -3757 1717 160 0 7 chr4 84714710 84714998 -117613349 + L1MB2 LINE L1 5658 5943 -228 227 54 27 0 chr4 84716747 84716784 -117611563 + (TG)n Simple_repeat Simple_repeat 2 39 0 219 327 28 37 chr4 84717860 84717967 -117610380 - L2 LINE L2 0 3272 3167 495 241 166 29 chr4 84717990 84718307 -117610040 + L2 LINE L2 2678 3035 -237 352 256 96 16 chr4 84718293 84718418 -117609929 + L2 LINE L2 3179 3313 0 * 192 40 0 0 chr4 84718681 84718706 -117609641 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2978 107 7 11 chr4 84720384 84720842 -117607505 + L1PA11 LINE L1 5719 6174 0 237 309 186 0 chr4 84720979 84721076 -117607271 - L2 LINE L2 -11 3261 3147 23 33 0 0 chr4 84721076 84721106 -117607241 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr4 84721270 84721306 -117607041 + AT_rich Low_complexity Low_complexity 1 36 0 725 281 13 39 chr4 84721401 84721632 -117606715 - LTR16A LTR ERVL -120 330 106 1440 123 45 0 chr4 84721707 84721927 -117606420 - MER30 DNA MER1_type 0 230 1 1323 181 51 14 chr4 84722290 84722583 -117605764 - L1MC3 LINE L1 -101 7684 7381 275 359 44 9 chr4 84722765 84722981 -117605366 + MIR SINE MIR 34 259 -3 293 231 0 0 chr4 84723805 84723857 -117604490 - Tigger3(Golem) DNA MER2_type -2977 52 1 * 1529 174 44 4 chr4 84723857 84724131 -117604216 - Tigger3(Golem) DNA MER2_type -2744 285 1 497 227 26 178 chr4 84724447 84724711 -117603636 + L2 LINE L2 2141 2364 -950 293 146 0 0 chr4 84724828 84724869 -117603478 + Tigger3(Golem) DNA MER2_type 2988 3028 -1 314 379 80 26 chr4 84724877 84725141 -117603206 + L2 LINE L2 2580 2857 -457 402 329 90 0 chr4 84725894 84726049 -117602298 + MIR SINE MIR 31 199 -63 2061 172 39 33 chr4 84726053 84726605 -117601742 - MLT2A2 LTR ERVL -3 551 1 1257 221 24 7 chr4 84727556 84727854 -117600493 - L1P3 LINE L1 -4870 2714 2412 4157 241 43 33 chr4 84727894 84729007 -117599340 - L1P3 LINE L1 -6444 1137 14 307 196 108 39 chr4 84729014 84729116 -117599231 - L1MCa LINE L1 -4323 2103 1995 2139 265 53 45 chr4 84729147 84730845 -117597502 - L1MCc LINE L1 -3985 3137 1213 642 310 81 30 chr4 84730846 84731181 -117597166 - L1MCc LINE L1 -5265 1158 807 399 292 131 39 chr4 84731306 84731642 -117596705 - L1MCc LINE L1 -6037 386 20 1291 185 33 94 chr4 84733100 84733463 -117594884 + MER58B DNA MER1_type 1 341 0 219 36 0 0 chr4 84734361 84734389 -117593958 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1631 220 124 73 chr4 84734563 84735272 -117593075 - LTR1B LTR ERV1 -81 745 1 246 353 50 34 chr4 84735848 84735967 -117592380 - L2 LINE L2 -25 3247 3127 22 35 0 0 chr4 84736300 84736329 -117592018 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr4 84736824 84736868 -117591479 + AT_rich Low_complexity Low_complexity 1 44 0 438 262 49 0 chr4 84736898 84737020 -117591327 - MLT2E LTR ERVL 0 628 501 * 737 281 145 5 chr4 84737014 84737235 -117591112 - MLT2E LTR ERVL -376 252 1 404 354 102 31 chr4 84737265 84737646 -117590701 - L2 LINE L2 0 3272 2865 22 0 0 0 chr4 84738165 84738187 -117590160 + AT_rich Low_complexity Low_complexity 1 22 0 8342 87 21 1 chr4 84738301 84740277 -117588070 + L1PA8 LINE L1 4166 6174 0 454 269 54 91 chr4 84740280 84740785 -117587562 + L1MEd LINE L1 378 813 -5316 448 65 0 0 chr4 84740785 84740847 -117587500 - L1PA6 LINE L1 0 6154 6093 454 269 54 91 chr4 84740847 84741384 -117586963 + L1MEd LINE L1 813 1369 -4760 200 83 62 42 chr4 84741850 84741898 -117586449 + A-rich Low_complexity Low_complexity 1 49 0 714 128 28 0 chr4 84742170 84742279 -117586068 - MER44D DNA MER2_type 0 605 494 975 147 60 65 chr4 84742336 84742503 -117585844 - MER44D DNA MER2_type -1962 529 363 2428 69 0 0 chr4 84742503 84742807 -117585540 + AluY SINE Alu 5 308 -3 975 147 60 65 chr4 84742807 84742871 -117585476 - MER44D DNA MER2_type -2128 363 29 394 257 46 9 chr4 84742972 84743081 -117585266 - MLT1E3 LTR MaLR -164 460 348 278 348 39 44 chr4 84743259 84743440 -117584907 - MLT1E3-int LTR MaLR -486 885 706 522 274 26 7 chr4 84743514 84743676 -117584671 - MLT1E3-int LTR MaLR -899 472 315 21 0 0 0 chr4 84743781 84743802 -117584545 + AT_rich Low_complexity Low_complexity 1 21 0 632 265 134 77 chr4 84743854 84744310 -117584037 - MLT1E3 LTR MaLR -142 482 1 909 326 52 11 chr4 84744735 84745176 -117583171 - MLT1J LTR MaLR -51 460 2 1975 89 0 0 chr4 84745718 84745988 -117582359 - L1PA8 LINE L1 -3 6169 5900 2308 64 0 0 chr4 84745988 84746285 -117582062 + L1PA8 LINE L1 5602 5898 -233 24 0 0 0 chr4 84746989 84747013 -117581334 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chr4 84747492 84747521 -117580826 + AT_rich Low_complexity Low_complexity 1 29 0 254 269 79 102 chr4 84747697 84748002 -117580345 + L1MC/D LINE L1 5340 5637 -2171 892 37 0 0 chr4 84748129 84748238 -117580109 + L1PA2 LINE L1 6047 6155 0 186 143 0 0 chr4 84748241 84748276 -117580071 + (A)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr4 84748572 84748595 -117579752 + AT_rich Low_complexity Low_complexity 1 23 0 2071 47 4 0 chr4 84749674 84749932 -117578415 + L1PA8 LINE L1 5911 6169 -3 304 280 143 58 chr4 84750058 84750351 -117577996 - L3 LINE CR1 -262 1315 998 602 241 88 23 chr4 84750894 84751155 -117577192 + L1MC5 LINE L1 7661 7938 -23 925 159 12 0 chr4 84751924 84752087 -117576260 - L1MD2 LINE L1 -87 6272 6108 649 311 31 8 chr4 84752147 84752401 -117575946 - MIR SINE MIR 0 262 3 438 286 162 0 chr4 84755029 84755183 -117573164 + MIR SINE MIR 3 181 -81 503 241 82 46 chr4 84755437 84755632 -117572715 + MLT1K LTR MaLR 382 583 -5 578 132 49 8 chr4 84755646 84755897 -117572450 + (TA)n Simple_repeat Simple_repeat 1 261 0 184 130 43 0 chr4 84755914 84755960 -117572387 + (TA)n Simple_repeat Simple_repeat 2 49 0 827 227 94 20 chr4 84756162 84756365 -117571982 - MLT1F LTR MaLR -3 564 347 * 846 179 84 37 chr4 84756364 84756554 -117571793 - MLT1F LTR MaLR -343 199 1 373 269 0 0 chr4 84756560 84756638 -117571709 - MIR SINE MIR -115 147 70 2684 163 84 65 chr4 84757069 84757674 -117570673 - L1MA9 LINE L1 -314 5998 5360 2141 105 3 19 chr4 84757674 84757989 -117570358 - AluSp SINE Alu -1 312 3 2684 163 84 65 chr4 84757989 84758464 -117569883 - L1MA9 LINE L1 -952 5360 4895 212 59 78 0 chr4 84760366 84760417 -117567930 + (TA)n Simple_repeat Simple_repeat 2 56 0 270 384 8 66 chr4 84761034 84761138 -117567209 + L2 LINE L2 3004 3112 -160 911 205 76 0 chr4 84761138 84761309 -117567038 - MER5A DNA MER1_type -4 185 2 270 384 8 66 chr4 84761309 84761446 -117566901 + L2 LINE L2 3112 3231 -41 232 289 12 93 chr4 84761464 84761680 -117566667 + MIR SINE MIR 12 204 -58 207 225 0 0 chr4 84761680 84761720 -117566627 + (TA)n Simple_repeat Simple_repeat 1 40 0 43639 40 2 2 chr4 84762063 84768219 -117560128 - L1PA3 LINE L1 -1 6154 2 26 0 0 0 chr4 84768580 84768606 -117559741 + AT_rich Low_complexity Low_complexity 1 26 0 1991 147 0 0 chr4 84768744 84769061 -117559286 + AluSx SINE Alu 1 317 0 797 203 42 21 chr4 84769202 84769394 -117558953 + MLT1H LTR MaLR 12 207 -342 25 0 0 0 chr4 84769444 84769469 -117558878 + AT_rich Low_complexity Low_complexity 1 25 0 989 197 63 22 chr4 84770573 84770842 -117557505 + L1MB8 LINE L1 5894 6173 -5 288 172 0 0 chr4 84771055 84771113 -117557234 + (TA)n Simple_repeat Simple_repeat 1 58 0 251 198 0 66 chr4 84771116 84771222 -117557125 - L1MC4 LINE L1 -1339 6703 6605 615 272 102 5 chr4 84771450 84771656 -117556691 - MIR SINE MIR -3 259 34 576 303 38 38 chr4 84771662 84771900 -117556447 + MIR SINE MIR 13 250 -12 22 0 0 0 chr4 84772241 84772263 -117556084 + AT_rich Low_complexity Low_complexity 1 22 0 2790 53 17 0 chr4 84772360 84772716 -117555631 + L1PA5 LINE L1 5777 6138 -16 333 0 0 0 chr4 84772716 84772753 -117555594 + (TA)n Simple_repeat Simple_repeat 1 37 0 201 94 0 0 chr4 84773175 84773207 -117555140 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 479 325 14 11 chr4 84773739 84774016 -117554331 - L1MEc LINE L1 -3621 2594 2317 1422 220 20 33 chr4 84774122 84774517 -117553830 - MLT1B LTR MaLR 0 390 1 258 293 60 17 chr4 84774859 84775091 -117553256 - L1MEc LINE L1 -4579 1817 1576 465 304 58 33 chr4 84775196 84775472 -117552875 - L1MEc LINE L1 -5836 369 87 387 0 0 0 chr4 84775562 84775605 -117552742 + (TG)n Simple_repeat Simple_repeat 2 44 0 429 325 13 0 chr4 84775936 84776090 -117552257 - MER117 DNA MER1_type -29 168 13 2081 95 7 3 chr4 84776172 84776466 -117551881 - AluSg SINE Alu -14 296 2 2078 138 0 0 chr4 84777559 84777863 -117550484 - AluSx SINE Alu -8 304 1 243 319 97 21 chr4 84778149 84778293 -117550054 + L2 LINE L2 2334 2488 -826 291 246 94 89 chr4 84778352 84778860 -117549487 - L1MC5 LINE L1 -188 7773 7263 471 269 53 14 chr4 84778939 84779159 -117549188 - L1MC4a LINE L1 -633 7233 6999 623 275 73 26 chr4 84779200 84779513 -117548834 - L1ME LINE L1 -577 5585 5258 333 303 81 46 chr4 84779519 84779803 -117548544 - L1ME LINE L1 -891 5255 4962 21 0 0 0 chr4 84779872 84779893 -117548454 + AT_rich Low_complexity Low_complexity 1 21 0 1234 196 161 9 chr4 84781102 84781419 -117546928 - MLT1A1 LTR MaLR 0 365 1 1289 199 52 7 chr4 84781451 84781738 -117546609 + MER33 DNA MER1_type 3 302 -22 345 303 75 88 chr4 84781897 84782037 -117546310 + MER102b DNA MER1_type 26 166 -1262 2422 56 7 13 chr4 84782037 84782339 -117546008 + AluSq SINE Alu 2 301 -12 345 303 75 88 chr4 84782339 84782518 -117545829 + MER102b DNA MER1_type 166 341 0 48 32 0 0 chr4 84782761 84782823 -117545524 + AT_rich Low_complexity Low_complexity 1 62 0 232 354 8 31 chr4 84782823 84782875 -117545472 - MIR SINE MIR -57 205 153 2085 137 50 19 chr4 84782875 84783239 -117545108 + THE1C LTR MaLR 1 375 0 232 354 8 31 chr4 84783239 84783313 -117545034 - MIR SINE MIR -109 153 82 479 118 29 29 chr4 84784310 84784412 -117543935 - L1MB3 LINE L1 -2 6181 6080 679 263 55 122 chr4 84784421 84785208 -117543139 - L1MC4 LINE L1 0 8042 7309 287 271 186 8 chr4 84785958 84786076 -117542271 - MIR3 SINE MIR -40 168 30 32 43 0 0 chr4 84786273 84786319 -117542028 + AT_rich Low_complexity Low_complexity 1 46 0 222 378 0 0 chr4 84786740 84786814 -117541533 + polypurine Low_complexity Low_complexity 3 76 0 2027 120 14 0 chr4 84786959 84787281 -117541066 + AluSg SINE Alu 3 328 0 308 374 5 35 chr4 84787283 84787486 -117540861 + L1 LINE L1 1532 1728 -5768 2464 258 61 28 chr4 84788114 84788864 -117539483 + L1 LINE L1 2041 2765 -4800 2446 49 0 10 chr4 84788864 84789169 -117539178 + AluY SINE Alu 1 302 -9 2464 258 61 28 chr4 84789169 84790350 -117537997 + L1 LINE L1 2765 3906 -3659 243 0 0 0 chr4 84790350 84790377 -117537970 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1617 111 41 0 chr4 84790379 84790623 -117537724 - L1PA12 LINE L1 -8 6160 5907 2464 258 61 28 chr4 84790623 84791276 -117537071 + L1 LINE L1 3906 4691 -2874 * 10721 165 19 10 chr4 84791266 84796985 -117531362 + L1M1 LINE L1 13 5909 -1656 4535 15 1 0 chr4 84796987 84797867 -117530480 - L1P1 LINE L1 -421 5734 4854 3676 12 0 0 chr4 84797864 84798283 -117530064 + L1HS LINE L1 5735 6153 -2 * 200 279 0 0 chr4 84798285 84798353 -117529994 + A-rich Low_complexity Low_complexity 1 68 0 3782 181 7 6 chr4 84798353 84799086 -117529261 + L1M1 LINE L1 5896 6629 -936 2461 203 19 22 chr4 84799068 84799650 -117528697 + L1 LINE L1 5240 5819 -1746 * 202 360 137 7 chr4 84799768 84799921 -117528426 - L2 LINE L2 -213 3059 2887 262 428 53 8 chr4 84800099 84800230 -117528117 - L2 LINE L2 -8 3264 3128 386 265 65 41 chr4 84800237 84800407 -117527940 - LTR67 LTR ERVL 0 557 384 793 207 61 68 chr4 84800678 84800998 -117527349 - LTR1B LTR ERV1 0 826 543 5941 85 9 13 chr4 84801404 84802263 -117526084 - L1PB1 LINE L1 -3 6148 5293 212 200 17 0 chr4 84803010 84803070 -117525277 + GA-rich Low_complexity Low_complexity 1 61 0 5371 136 75 5 chr4 84804306 84805335 -117523012 - L1PA15 LINE L1 -3 6162 5050 33 56 0 0 chr4 84805397 84805451 -117522896 + AT_rich Low_complexity Low_complexity 1 54 0 23 54 0 0 chr4 84805508 84805545 -117522802 + AT_rich Low_complexity Low_complexity 1 37 0 5758 74 11 0 chr4 84805863 84806621 -117521726 + L1PA7 LINE L1 3982 4747 -1399 1771 77 8 16 chr4 84806621 84806855 -117521492 + L1PA7 LINE L1 5901 6146 -8 37 39 0 0 chr4 84806855 84806906 -117521441 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr4 84806960 84806981 -117521366 + AT_rich Low_complexity Low_complexity 1 21 0 778 282 46 9 chr4 84807270 84807520 -117520827 - MIR SINE MIR -3 259 4 346 77 0 0 chr4 84808057 84808109 -117520238 - L1MA8 LINE L1 -4 6287 6236 1548 260 0 3 chr4 84808798 84809117 -117519230 - MLT1A1 LTR MaLR 0 365 48 1346 157 6 129 chr4 84809247 84809603 -117518744 + MLT1B LTR MaLR 79 390 0 22 35 0 0 chr4 84809761 84809790 -117518557 + AT_rich Low_complexity Low_complexity 1 29 0 32 67 0 0 chr4 84810025 84810085 -117518262 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr4 84810201 84810224 -117518123 + AT_rich Low_complexity Low_complexity 1 23 0 1726 194 86 108 chr4 84810292 84810958 -117517389 - L1MC4 LINE L1 -145 7897 7247 458 196 0 0 chr4 84811069 84811161 -117517186 + L1MB5 LINE L1 6076 6167 -7 421 338 187 5 chr4 84811445 84811664 -117516683 + MIR SINE MIR 4 262 0 2136 117 0 3 chr4 84811737 84812035 -117516312 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr4 84813390 84813411 -117514936 + AT_rich Low_complexity Low_complexity 1 21 0 391 293 9 0 chr4 84814425 84814531 -117513816 + MIR SINE MIR 134 240 -22 446 311 114 15 chr4 84814606 84814870 -117513477 - L2 LINE L2 -1051 2263 1974 752 225 70 16 chr4 84815019 84815206 -117513141 + MIR SINE MIR 10 206 -56 401 260 30 77 chr4 84815228 84815397 -117512950 - L2 LINE L2 -1367 1947 1787 342 0 0 0 chr4 84815439 84815477 -117512870 + (TG)n Simple_repeat Simple_repeat 2 39 0 180 0 0 0 chr4 84816068 84816088 -117512259 + (TAA)n Simple_repeat Simple_repeat 2 21 0 279 324 37 22 chr4 84816128 84816264 -117512083 + MIR SINE MIR 91 228 -34 1201 241 36 105 chr4 84818186 84818664 -117509683 - MLT1E2 LTR MaLR 0 626 61 306 106 0 0 chr4 84819961 84820008 -117508339 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 35 0 0 chr4 84820427 84820456 -117507891 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr4 84820810 84820850 -117507497 + AT_rich Low_complexity Low_complexity 1 40 0 3833 142 47 0 chr4 84821258 84821900 -117506447 + L1PA13 LINE L1 5491 6162 -1 180 231 0 0 chr4 84822468 84822507 -117505840 + MIR SINE MIR 208 246 -16 1579 102 5 0 chr4 84822507 84822723 -117505624 + AluSx SINE Alu 1 217 -95 819 286 145 34 chr4 84822818 84823266 -117505081 - MLT1J LTR MaLR -13 498 1 181 344 16 0 chr4 84823294 84823355 -117504992 + MIR3 SINE MIR 110 171 -37 330 316 11 11 chr4 84824041 84824136 -117504211 + MIR SINE MIR 58 152 -56 190 339 113 17 chr4 84824192 84824307 -117504040 - MER5A DNA MER1_type -57 132 7 449 305 157 20 chr4 84825460 84825657 -117502690 + MIR SINE MIR 34 257 -5 930 172 38 69 chr4 84825699 84825961 -117502386 + Charlie5 DNA MER1_type 2363 2616 0 682 324 91 37 chr4 84827114 84827521 -117500826 + L3 LINE CR1 959 1387 -190 180 0 0 0 chr4 84827913 84827933 -117500414 + (T)n Simple_repeat Simple_repeat 1 20 0 262 232 0 0 chr4 84829307 84829363 -117498984 - L2 LINE L2 -1 3312 3257 199 268 49 37 chr4 84829340 84829422 -117498925 + MIR3 SINE MIR 89 171 -37 * 1334 106 0 0 chr4 84830646 84830826 -117497521 - AluSq SINE Alu -11 302 123 631 132 105 0 chr4 84831217 84831331 -117497016 + MER2 DNA MER2_type 174 299 -46 2227 154 83 0 chr4 84831684 84831745 -117496602 - MSTA LTR MaLR 0 428 374 216 0 0 0 chr4 84831745 84831769 -117496578 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2227 154 83 0 chr4 84831769 84832102 -117496245 - MSTA LTR MaLR -54 374 1 251 272 221 19 chr4 84832117 84832275 -117496072 - MLT1J2 LTR MaLR -213 237 48 300 341 36 0 chr4 84832435 84832573 -117495774 + MIR SINE MIR 120 262 0 23 54 0 0 chr4 84833710 84833747 -117494600 + AT_rich Low_complexity Low_complexity 1 37 0 2229 83 4 0 chr4 84833870 84834193 -117494154 + AluSc SINE Alu 1 324 0 207 343 131 36 chr4 84834236 84834373 -117493974 + MIR SINE MIR 31 180 -82 1158 236 165 10 chr4 84835417 84835933 -117492414 - L1MEc LINE L1 -2677 3538 2943 1409 298 83 42 chr4 84835946 84836735 -117491612 - L1MEc LINE L1 -4722 1674 918 1830 158 0 0 chr4 84836735 84837008 -117491339 + AluSq SINE Alu 1 273 -40 396 0 0 0 chr4 84837008 84837052 -117491295 + (TA)n Simple_repeat Simple_repeat 2 45 0 1409 298 83 42 chr4 84837052 84837396 -117490951 - L1MEc LINE L1 -5477 919 494 410 334 82 77 chr4 84838979 84839376 -117488971 + L2 LINE L2 2424 2817 -455 3604 188 100 37 chr4 84839376 84840188 -117488159 + MER21B LTR ERV1 1 863 0 410 334 82 77 chr4 84840188 84840578 -117487769 + L2 LINE L2 2817 3217 -55 405 0 0 0 chr4 84840642 84840687 -117487660 + (TGAG)n Simple_repeat Simple_repeat 3 47 0 327 104 0 0 chr4 84841208 84841256 -117487091 + (CA)n Simple_repeat Simple_repeat 2 49 0 1296 254 62 80 chr4 84842246 84843032 -117485315 + MER31-int LTR ERV1 3333 4104 -832 957 225 73 6 chr4 84843322 84843637 -117484710 + LTR37A LTR ERV1 91 426 0 316 280 74 40 chr4 84843935 84844110 -117484237 + L1ME LINE L1 4989 5169 -977 22 0 0 0 chr4 84844207 84844229 -117484118 + AT_rich Low_complexity Low_complexity 1 22 0 1070 183 54 81 chr4 84844291 84844586 -117483761 + AluJo SINE Alu 5 291 -11 406 272 104 35 chr4 84844732 84845019 -117483328 + L1ME LINE L1 5502 5808 -313 * 540 230 31 86 chr4 84844998 84845021 -117483326 - L1MC4a LINE L1 -1887 5921 5898 1989 119 20 27 chr4 84845021 84845315 -117483032 - AluSx SINE Alu -20 292 1 540 230 31 86 chr4 84845315 84845513 -117482834 - L1MC4a LINE L1 -1910 5898 5712 481 234 94 53 chr4 84845580 84845751 -117482596 - MIR SINE MIR -12 250 73 2236 113 0 0 chr4 84845970 84846262 -117482085 - AluSg SINE Alu -17 293 2 235 355 19 9 chr4 84846316 84846423 -117481924 - MER5A DNA MER1_type -71 118 11 4970 161 19 63 chr4 84846479 84846821 -117481526 + Ricksha_b DNA DNA 2 358 -2496 2258 146 0 26 chr4 84846821 84847206 -117481141 - THE1C LTR MaLR 0 375 1 4970 161 19 63 chr4 84847206 84848070 -117480277 + Ricksha_b DNA DNA 358 1247 -7 340 280 0 40 chr4 84848077 84848177 -117480170 + MIR SINE MIR 53 148 -114 9589 28 1 2 chr4 84848730 84850001 -117478346 + L1P2 LINE L1 4229 5499 -656 2407 184 23 34 chr4 84850117 84850448 -117477899 - L1M2 LINE L1 -506 5794 5461 1852 151 22 46 chr4 84850448 84850819 -117477528 - THE1B LTR MaLR 0 364 3 11421 103 3 0 chr4 84850821 84852396 -117475951 - THE1B-int LTR MaLR 0 1580 1 2064 123 16 48 chr4 84852398 84852772 -117475575 - THE1B LTR MaLR -2 362 1 2407 184 23 34 chr4 84852772 84853181 -117475166 - L1M2 LINE L1 -841 5459 5058 415 192 6 186 chr4 84853177 84853354 -117474993 - L1MB1 LINE L1 -57 6132 5988 * 21 0 0 0 chr4 84853899 84853920 -117474427 + AT_rich Low_complexity Low_complexity 1 21 0 275 214 0 0 chr4 84854286 84854342 -117474005 + Charlie1 DNA MER1_type 51 106 -2655 * 570 244 11 22 chr4 84854333 84854513 -117473834 + Charlie1 DNA MER1_type 2563 2740 -21 435 221 37 15 chr4 84855223 84855359 -117472988 - MER31-int LTR ERV1 -3488 1448 1310 1120 172 69 66 chr4 84856158 84856458 -117471889 - LTR37A LTR ERV1 -2 424 121 687 12 0 0 chr4 84856458 84856540 -117471807 + L1PA3 LINE L1 6071 6152 -3 1120 172 69 66 chr4 84856540 84856588 -117471759 - LTR37A LTR ERV1 -305 121 75 28 0 0 0 chr4 84857420 84857448 -117470899 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 84857853 84857876 -117470471 + AT_rich Low_complexity Low_complexity 1 23 0 222 322 168 41 chr4 84859283 84859671 -117468676 + L2 LINE L2 2320 2756 -558 204 359 127 27 chr4 84859828 84860048 -117468299 + L2 LINE L2 2807 3048 -224 21 0 0 0 chr4 84861116 84861137 -117467210 + AT_rich Low_complexity Low_complexity 1 21 0 253 343 66 50 chr4 84861303 84861501 -117466846 - L2 LINE L2 -175 3097 2897 1133 178 37 28 chr4 84861701 84861915 -117466432 - MLT1D LTR MaLR -1 504 289 2052 122 34 0 chr4 84862111 84862406 -117465941 + AluSg SINE Alu 1 305 -5 949 191 61 30 chr4 84862440 84862671 -117465676 - L1M2 LINE L1 -1705 4441 4204 1820 28 0 0 chr4 84862822 84863038 -117465309 + L1PA5 LINE L1 5939 6154 0 689 144 69 98 chr4 84863215 84863388 -117464959 + MER20 DNA MER1_type 52 219 0 209 316 25 0 chr4 84864060 84864139 -117464208 - MIR SINE MIR -6 256 176 239 286 56 0 chr4 84864790 84864916 -117463431 + L1MC/D LINE L1 5352 5484 -686 1291 100 6 0 chr4 84864960 84865130 -117463217 + AluSg/x SINE Alu 110 280 -32 198 0 0 0 chr4 84865133 84865155 -117463192 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 324 238 0 0 chr4 84865157 84865241 -117463106 + (CATATA)n Simple_repeat Simple_repeat 2 85 0 274 356 42 0 chr4 84865242 84865360 -117462987 + L1MC/D LINE L1 5538 5660 -2148 2454 62 0 3 chr4 84865472 84865777 -117462570 + AluY SINE Alu 1 304 -7 361 188 58 0 chr4 84866117 84866186 -117462161 + MER96 DNA MER1_type? 98 170 -5 233 111 44 0 chr4 84866711 84866756 -117461591 + (CATA)n Simple_repeat Simple_repeat 2 48 0 193 57 57 0 chr4 84867595 84867630 -117460717 + GA-rich Low_complexity Low_complexity 2 38 0 21 36 0 0 chr4 84867711 84867739 -117460608 + AT_rich Low_complexity Low_complexity 1 28 0 533 363 98 36 chr4 84870249 84871245 -117457102 - L2 LINE L2 -31 3241 2173 275 283 9 26 chr4 84871754 84871867 -117456480 - L1ME4a LINE L1 -2 6119 6009 226 212 53 9 chr4 84871900 84872013 -117456334 + (TA)n Simple_repeat Simple_repeat 2 119 0 789 232 43 48 chr4 84872827 84873198 -117455149 + L1MC5 LINE L1 7545 7913 -48 323 241 78 35 chr4 84873309 84873425 -117454922 + MER112 DNA MER1_type 138 258 -2 225 0 0 0 chr4 84873584 84873609 -117454738 + (TG)n Simple_repeat Simple_repeat 2 26 0 225 0 0 0 chr4 84873608 84873633 -117454714 + (TA)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr4 84873683 84873705 -117454642 + AT_rich Low_complexity Low_complexity 1 22 0 295 257 91 76 chr4 84873705 84873915 -117454432 - L1ME LINE L1 -508 5613 5401 228 267 0 18 chr4 84874522 84874621 -117453726 + A-rich Low_complexity Low_complexity 1 158 0 497 267 34 20 chr4 84875712 84875858 -117452489 - MER5B DNA MER1_type -23 155 8 21 36 0 0 chr4 84876108 84876136 -117452211 + AT_rich Low_complexity Low_complexity 1 28 0 197 405 9 0 chr4 84876631 84876742 -117451605 - MER5B DNA MER1_type -66 112 1 357 226 59 39 chr4 84877156 84877258 -117451089 + L2 LINE L2 3210 3313 0 22 0 0 0 chr4 84877554 84877576 -117450771 + AT_rich Low_complexity Low_complexity 1 22 0 22 88 0 0 chr4 84878743 84878800 -117449547 + AT_rich Low_complexity Low_complexity 1 57 0 290 164 60 17 chr4 84880330 84880446 -117447901 + (TA)n Simple_repeat Simple_repeat 2 122 0 335 245 0 43 chr4 84880448 84880542 -117447805 - L1MC4 LINE L1 -1339 6703 6614 360 0 0 0 chr4 84880609 84880649 -117447698 + (CA)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr4 84881436 84881459 -117446888 + AT_rich Low_complexity Low_complexity 1 23 0 251 312 75 11 chr4 84881471 84881657 -117446690 - L1ME4a LINE L1 -1 6120 5923 21 0 0 0 chr4 84881979 84882000 -117446347 + AT_rich Low_complexity Low_complexity 1 21 0 2245 144 19 3 chr4 84883555 84883924 -117444423 - THE1C LTR MaLR 0 375 1 9664 133 36 12 chr4 84883924 84885467 -117442880 - THE1C-int LTR MaLR 0 1580 1 2480 134 5 0 chr4 84885467 84885840 -117442507 - THE1C LTR MaLR 0 375 1 1930 182 21 19 chr4 84886223 84886597 -117441750 - THE1C LTR MaLR 0 375 1 9475 117 43 37 chr4 84886597 84888167 -117440180 - THE1C-int LTR MaLR 0 1580 1 2451 123 8 11 chr4 84888169 84888543 -117439804 - THE1C LTR MaLR -2 373 1 365 357 9 0 chr4 84888543 84888655 -117439692 - MIR SINE MIR -149 113 1 242 315 19 46 chr4 84888693 84888801 -117439546 + MIR SINE MIR 48 152 -110 3166 210 19 8 chr4 84888805 84889444 -117438903 - MER82 DNA MER2_type -1 652 7 234 0 0 0 chr4 84890492 84890518 -117437829 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 192 360 65 59 chr4 84891033 84891339 -117437008 + L2 LINE L2 2468 2775 -539 307 283 0 50 chr4 84891422 84891521 -117436826 + L2 LINE L2 3220 3313 0 191 295 16 0 chr4 84893435 84893496 -117434851 - L2 LINE L2 0 3313 3252 766 260 18 22 chr4 84894376 84894599 -117433748 - MIR SINE MIR 0 262 41 5096 257 66 40 chr4 84895018 84895891 -117432456 - L1 LINE L1 -2472 3738 2889 5331 128 16 12 chr4 84895891 84896695 -117431652 + L1PA13 LINE L1 4688 5497 -666 471 95 68 0 chr4 84896695 84896769 -117431578 + MADE1 DNA Mariner 1 79 -1 5331 128 16 12 chr4 84896769 84897439 -117430908 + L1PA13 LINE L1 5497 6163 0 5096 257 66 40 chr4 84897439 84897937 -117430410 - L1 LINE L1 -3321 2889 2406 1562 171 0 15 chr4 84897937 84898211 -117430136 - AluJb SINE Alu 0 312 43 5096 257 66 40 chr4 84898211 84898822 -117429525 - L1 LINE L1 -3804 2406 1812 3327 129 2 6 chr4 84898822 84899335 -117429012 + MER9 LTR ERVK 1 511 0 5096 257 66 40 chr4 84899335 84901284 -117427063 - L1 LINE L1 -4398 1812 1 770 220 0 0 chr4 84901595 84901736 -117426611 + MER2 DNA MER2_type 1 141 -204 395 236 287 0 chr4 84902041 84902198 -117426149 - MIR SINE MIR -13 249 48 325 350 61 19 chr4 84906046 84906260 -117422087 - MIR SINE MIR -3 259 37 535 226 0 10 chr4 84906273 84906375 -117421972 + MER5A DNA MER1_type 9 109 -80 981 146 39 45 chr4 84907241 84907419 -117420928 - FRAM SINE Alu -2 174 1 3074 174 29 38 chr4 84909512 84910487 -117417860 + L1MB5 LINE L1 4957 5908 -266 440 195 0 0 chr4 84911071 84911148 -117417199 - MER63 DNA MER1_type -309 752 676 22 35 0 0 chr4 84911183 84911212 -117417135 + AT_rich Low_complexity Low_complexity 1 29 0 27 62 0 0 chr4 84912186 84912234 -117416113 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr4 84914286 84914314 -117414033 + AT_rich Low_complexity Low_complexity 1 28 0 2524 144 41 11 chr4 84914805 84915241 -117413106 - L1PB3 LINE L1 -2 6152 5704 189 271 0 0 chr4 84915329 84915377 -117412970 - L2 LINE L2 0 3313 3266 198 0 0 0 chr4 84916581 84916603 -117411744 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 22 56 0 0 chr4 84916762 84916798 -117411549 + AT_rich Low_complexity Low_complexity 1 36 0 275 300 161 8 chr4 84916947 84917077 -117411270 - MIR SINE MIR -5 257 108 21 0 0 0 chr4 84917782 84917803 -117410544 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 84918642 84918669 -117409678 + AT_rich Low_complexity Low_complexity 1 27 0 232 268 49 0 chr4 84918837 84918919 -117409428 - MIR SINE MIR -73 189 104 666 241 31 31 chr4 84919752 84919943 -117408404 + MER63A DNA MER1_type 15 205 -5 328 343 15 15 chr4 84919957 84920091 -117408256 - MIR SINE MIR -109 153 20 308 302 12 0 chr4 84920443 84920529 -117407818 + CT-rich Low_complexity Low_complexity 2 88 0 615 230 0 43 chr4 84920673 84920812 -117407535 + FLAM_C SINE Alu 1 133 0 2522 45 12 24 chr4 84921696 84922027 -117406320 - L1PA3 LINE L1 0 6155 5829 220 280 76 76 chr4 84922422 84922540 -117405807 + L2 LINE L2 3150 3267 -5 269 313 54 27 chr4 84922856 84922968 -117405379 - L2 LINE L2 -8 3305 3191 757 231 87 0 chr4 84923290 84923463 -117404884 - MER5A DNA MER1_type 0 189 2 230 328 8 57 chr4 84923738 84923860 -117404487 - MIR SINE MIR -50 212 97 26 50 0 0 chr4 84924116 84924156 -117404191 + AT_rich Low_complexity Low_complexity 1 40 0 225 217 22 0 chr4 84925466 84925512 -117402835 - MER103 DNA DNA -69 97 51 225 0 0 0 chr4 84929093 84929118 -117399229 + (T)n Simple_repeat Simple_repeat 1 25 0 308 263 98 105 chr4 84929771 84930056 -117398291 + L1M2 LINE L1 856 1138 -5711 297 197 0 0 chr4 84930536 84930597 -117397750 + (TG)n Simple_repeat Simple_repeat 1 61 0 206 302 12 12 chr4 84930709 84930795 -117397552 + G-rich Low_complexity Low_complexity 5 90 0 252 77 0 0 chr4 84930837 84930876 -117397471 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2102 111 4 0 chr4 84931387 84931699 -117396648 + AluSg SINE Alu 1 313 0 368 167 309 0 chr4 84931791 84931875 -117396472 - MIR SINE MIR -118 144 35 201 313 78 16 chr4 84932082 84932210 -117396137 + MIR SINE MIR 110 245 -17 236 189 149 0 chr4 84932324 84932398 -117395949 + MIR SINE MIR 149 233 -29 374 262 19 0 chr4 84932906 84933013 -117395334 + MIR SINE MIR 148 256 -6 209 322 136 0 chr4 84934105 84934223 -117394124 - L2 LINE L2 0 3313 3180 1601 235 158 79 chr4 84934916 84935512 -117392835 - MLT1E3 LTR MaLR -9 615 3 604 75 0 0 chr4 84936286 84936366 -117391981 + MADE1 DNA Mariner 1 80 0 298 313 0 12 chr4 84936439 84936522 -117391825 - L2 LINE L2 -2 3311 3230 764 298 12 90 chr4 84936600 84937010 -117391337 - L2 LINE L2 -2 3311 2934 262 241 0 38 chr4 84937625 84937704 -117390643 - L1ME4a LINE L1 -85 6036 5961 2151 133 0 7 chr4 84937877 84938186 -117390161 - AluSq SINE Alu -6 307 1 658 191 78 0 chr4 84940208 84940349 -117387998 - FRAM SINE Alu -14 152 1 21 0 0 0 chr4 84940525 84940546 -117387801 + AT_rich Low_complexity Low_complexity 1 21 0 3290 23 0 0 chr4 84941454 84941839 -117386508 + L1HS LINE L1 5771 6155 0 295 212 124 35 chr4 84942054 84942167 -117386180 + MIR SINE MIR 63 185 -77 277 299 0 0 chr4 84942921 84942988 -117385359 + L2 LINE L2 3247 3313 0 202 380 13 0 chr4 84943303 84943382 -117384965 + MIR SINE MIR 58 137 -71 189 107 0 0 chr4 84943382 84943410 -117384937 + (TC)n Simple_repeat Simple_repeat 2 29 0 2150 138 30 25 chr4 84943493 84943855 -117384492 + THE1B LTR MaLR 1 364 0 11774 92 6 0 chr4 84943855 84945425 -117382922 + THE1B-int LTR MaLR 1 1580 0 1851 115 60 29 chr4 84945427 84945741 -117382606 + THE1B LTR MaLR 3 326 -38 * 2546 117 15 15 chr4 84945727 84946121 -117382226 - MER83 LTR ERV1 -54 394 1 996 138 21 49 chr4 84946362 84946595 -117381752 - L1MB7 LINE L1 -262 5904 5677 245 167 19 0 chr4 84946605 84946659 -117381688 + L1MB5 LINE L1 5895 5949 -225 487 227 9 9 chr4 84946911 84947021 -117381326 - MER81 DNA DNA 0 114 5 1015 209 68 134 chr4 84947021 84947109 -117381238 - MLT2C1 LTR ERVL 0 414 322 667 53 35 9 chr4 84947109 84947223 -117381124 + (TCTA)n Simple_repeat Simple_repeat 1 117 0 1015 209 68 134 chr4 84947223 84947426 -117380921 - MLT2C1 LTR ERVL -92 322 142 200 35 35 0 chr4 84947833 84947862 -117380485 + (TA)n Simple_repeat Simple_repeat 2 31 0 26 0 0 0 chr4 84948650 84948676 -117379671 + AT_rich Low_complexity Low_complexity 1 26 0 651 279 17 0 chr4 84948735 84948907 -117379440 + MIR SINE MIR 88 262 0 186 369 12 12 chr4 84949456 84949540 -117378807 + MIR SINE MIR 5 88 -174 681 277 43 30 chr4 84950632 84950863 -117377484 + MIR SINE MIR 9 242 -20 208 283 132 40 chr4 84950917 84951069 -117377278 - MIR SINE MIR -77 185 20 221 83 28 0 chr4 84952406 84952442 -117375905 + (CA)n Simple_repeat Simple_repeat 2 38 0 1069 167 5 15 chr4 84954148 84954352 -117373995 - MER3 DNA MER1_type -4 205 4 529 115 21 0 chr4 84954849 84954945 -117373402 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 308 300 135 0 chr4 84956672 84956805 -117371542 - MIR3 SINE MIR -47 161 11 222 192 77 0 chr4 84956858 84956910 -117371437 - MIR SINE MIR -110 152 97 331 284 84 79 chr4 84956984 84957174 -117371173 - L2 LINE L2 0 3272 3082 202 271 0 0 chr4 84957390 84957438 -117370909 - L2 LINE L2 -2 3311 3264 263 349 48 0 chr4 84957656 84957782 -117370565 - MER94 DNA DNA 0 134 3 503 259 81 23 chr4 84957861 84958035 -117370312 - MIR SINE MIR -44 218 35 407 273 108 66 chr4 84958685 84959278 -117369069 - L1ME4a LINE L1 -14 6107 5490 41 58 0 0 chr4 84959341 84959410 -117368937 + AT_rich Low_complexity Low_complexity 1 69 0 272 280 16 8 chr4 84959437 84959562 -117368785 - L1P LINE L1 -776 5390 5265 712 72 0 0 chr4 84959575 84959672 -117368675 - AluY SINE Alu -8 303 207 216 250 15 15 chr4 84959767 84959835 -117368512 + (TA)n Simple_repeat Simple_repeat 1 68 0 21 0 0 0 chr4 84960253 84960274 -117368073 + AT_rich Low_complexity Low_complexity 1 21 0 198 71 0 0 chr4 84961282 84961310 -117367037 + (GA)n Simple_repeat Simple_repeat 1 28 0 1083 284 61 38 chr4 84962556 84963166 -117365181 - L2 LINE L2 0 3313 2686 7038 199 25 27 chr4 84963217 84963934 -117364413 - L1 LINE L1 -1187 4959 4242 185 0 40 0 chr4 84963934 84963959 -117364388 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 7038 199 25 27 chr4 84963959 84964934 -117363413 - L1 LINE L1 -1904 4242 3270 5221 140 22 2 chr4 84964932 84965805 -117362542 + L1MB1 LINE L1 5279 6168 0 * 249 252 92 25 chr4 84966742 84966756 -117361591 + MIR SINE MIR 125 137 -125 573 74 0 12 chr4 84966756 84966837 -117361510 - MADE1 DNA Mariner 0 80 1 249 252 92 25 chr4 84966837 84966941 -117361406 + MIR SINE MIR 137 251 -11 201 211 0 0 chr4 84967057 84967109 -117361238 + (CA)n Simple_repeat Simple_repeat 2 53 0 733 248 127 63 chr4 84967142 84967794 -117360553 + L2 LINE L2 2445 3139 -174 304 274 118 0 chr4 84969046 84969181 -117359166 + L2 LINE L2 3159 3309 -4 186 222 0 22 chr4 84969425 84969470 -117358877 + MIR SINE MIR 185 228 -34 250 202 226 12 chr4 84969594 84969678 -117358669 - MIR SINE MIR -114 148 47 425 319 7 22 chr4 84970237 84970372 -117357975 - MIR SINE MIR -73 189 57 2195 129 0 0 chr4 84972721 84973015 -117355332 + AluSx SINE Alu 1 294 -18 301 248 156 0 chr4 84973083 84973192 -117355155 + Charlie2 DNA MER1_type 196 321 -2541 998 200 166 50 chr4 84973198 84973662 -117354685 + Charlie2 DNA MER1_type 1856 2373 -489 787 218 111 52 chr4 84973709 84973919 -117354428 + Charlie2 DNA MER1_type 2464 2698 -164 2357 70 0 3 chr4 84973919 84974228 -117354119 - AluY SINE Alu 0 308 1 787 218 111 52 chr4 84974228 84974305 -117354042 + Charlie2 DNA MER1_type 2698 2769 -93 1844 149 6 32 chr4 84974473 84974789 -117353558 + THE1B LTR MaLR 57 364 0 11651 90 11 6 chr4 84974790 84976361 -117351986 + THE1B-int LTR MaLR 2 1580 0 2151 112 60 23 chr4 84976363 84976712 -117351635 + THE1B LTR MaLR 3 364 0 351 186 43 14 chr4 84977082 84977152 -117351195 + L2 LINE L2 3238 3309 -4 1540 139 0 129 chr4 84977329 84977661 -117350686 + AluJb SINE Alu 3 291 -21 1319 289 69 10 chr4 84978238 84978643 -117349704 + MLT2F LTR ERVL 5 433 -230 1361 283 87 36 chr4 84978736 84979266 -117349081 - MLT1E LTR MaLR -36 557 1 2269 263 46 0 chr4 84980039 84980602 -117347745 + MLT1G LTR MaLR 1 589 -1 411 219 27 15 chr4 84980633 84980744 -117347603 + L1PB4 LINE L1 6037 6146 -20 204 40 0 0 chr4 84980767 84980792 -117347555 + (TAA)n Simple_repeat Simple_repeat 2 26 0 234 0 0 0 chr4 84980792 84980818 -117347529 + (CAT)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr4 84980833 84980855 -117347492 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr4 84981333 84981362 -117346985 + AT_rich Low_complexity Low_complexity 1 29 0 474 65 0 0 chr4 84981445 84981507 -117346840 + (GGAA)n Simple_repeat Simple_repeat 4 65 0 1228 293 145 33 chr4 84981564 84982343 -117346004 + L2 LINE L2 2198 3115 -198 405 0 0 0 chr4 84982343 84982388 -117345959 + (CA)n Simple_repeat Simple_repeat 2 46 0 1228 293 145 33 chr4 84982388 84982612 -117345735 + L2 LINE L2 3115 3313 0 655 192 0 33 chr4 84982969 84983089 -117345258 - Tigger1 DNA MER2_type -2302 116 1 207 0 0 0 chr4 84983393 84983416 -117344931 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 372 298 78 56 chr4 84983498 84983963 -117344384 - L2 LINE L2 -124 3189 2645 13806 129 29 57 chr4 84984793 84985242 -117343105 - Tigger1 DNA MER2_type 0 2418 1958 1558 167 48 19 chr4 84985242 84985511 -117342836 + AluJo SINE Alu 1 277 -35 234 62 0 0 chr4 84985512 84985544 -117342803 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 13806 129 29 57 chr4 84985544 84986072 -117342275 - Tigger1 DNA MER2_type -460 1958 1417 482 135 54 0 chr4 84986072 84986146 -117342201 + AluJb SINE Alu 210 287 -25 13806 129 29 57 chr4 84986146 84986953 -117341394 - Tigger1 DNA MER2_type -1001 1417 643 3036 76 60 0 chr4 84986953 84987372 -117340975 + MLT2A1 LTR ERVL 1 444 0 13806 129 29 57 chr4 84987372 84987998 -117340349 - Tigger1 DNA MER2_type -1775 643 1 14396 30 1 0 chr4 84988211 84990712 -117337635 + L1PA4 LINE L1 3658 6155 0 1392 41 0 0 chr4 84992144 84992314 -117336033 - L1PA5 LINE L1 -2 6152 5983 35 0 0 0 chr4 84992503 84992538 -117335809 + AT_rich Low_complexity Low_complexity 1 35 0 2020 131 0 0 chr4 84992736 84993011 -117335336 + AluSg SINE Alu 4 278 -32 255 31 0 0 chr4 84993018 84993050 -117335297 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 42 71 0 0 chr4 84993439 84993523 -117334824 + AT_rich Low_complexity Low_complexity 1 84 0 212 267 188 10 chr4 84993524 84993625 -117334722 - L2 LINE L2 0 3272 3154 1290 191 63 15 chr4 84994081 84994482 -117333865 - L1MA4A LINE L1 -26 6277 5800 206 152 0 22 chr4 84994984 84995030 -117333317 + CT-rich Low_complexity Low_complexity 4 48 0 1426 282 181 32 chr4 84995103 84995654 -117332693 - L2 LINE L2 -126 3187 2720 1400 180 53 28 chr4 84995654 84996010 -117332337 + MLT1A1 LTR MaLR 1 365 0 1426 282 181 32 chr4 84996010 84996485 -117331862 - L2 LINE L2 -593 2720 2317 2207 95 0 0 chr4 84996485 84996789 -117331558 - AluSc SINE Alu 0 308 5 1426 282 181 32 chr4 84996789 84996868 -117331479 - L2 LINE L2 -996 2317 1909 2156 135 0 0 chr4 84996905 84997209 -117331138 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr4 84997460 84997482 -117330865 + AT_rich Low_complexity Low_complexity 1 22 0 1680 197 0 7 chr4 84997595 84997895 -117330452 + AluJo SINE Alu 1 298 -14 201 237 136 0 chr4 84998548 84998607 -117329740 + MIR SINE MIR 86 152 -110 203 171 0 24 chr4 84998766 84998807 -117329540 + (TG)n Simple_repeat Simple_repeat 1 40 0 309 167 0 0 chr4 84999713 84999791 -117328556 + (CAGA)n Simple_repeat Simple_repeat 4 81 0 180 354 25 0 chr4 85000264 85000343 -117328004 - L2 LINE L2 0 3313 3233 239 214 0 29 chr4 85000377 85000457 -117327890 + (TTATA)n Simple_repeat Simple_repeat 1 77 0 204 282 26 26 chr4 85000530 85000608 -117327739 - L2 LINE L2 -218 3054 2977 186 194 28 0 chr4 85001899 85001935 -117326412 - L2 LINE L2 -8 3305 3269 548 317 54 32 chr4 85001936 85002277 -117326070 - L2 LINE L2 -265 3048 2686 25 31 0 0 chr4 85003586 85003618 -117324729 + AT_rich Low_complexity Low_complexity 1 32 0 681 284 131 3 chr4 85003919 85004322 -117324025 - L1ME3A LINE L1 -297 5873 5415 383 279 52 0 chr4 85004392 85004528 -117323819 - L1ME3A LINE L1 -1429 4717 4575 632 296 118 8 chr4 85004534 85004788 -117323559 - MLT1J2 LTR MaLR -139 311 30 253 298 112 41 chr4 85004790 85005015 -117323332 - L1ME3A LINE L1 -1640 4506 4298 5801 111 23 5 chr4 85005015 85005970 -117322377 - L1PA15 LINE L1 -5 6160 5184 2021 139 23 3 chr4 85005971 85006272 -117322075 - AluJb SINE Alu -5 307 1 253 298 112 41 chr4 85006272 85006654 -117321693 - L1ME3A LINE L1 -1847 4299 3854 8175 203 37 30 chr4 85006660 85007765 -117320582 - L1MC1 LINE L1 0 6316 5220 1817 159 0 7 chr4 85007765 85008080 -117320267 - AluJb SINE Alu 0 315 3 8175 203 37 30 chr4 85008080 85008664 -117319683 - L1MC1 LINE L1 -1096 5220 4642 2147 66 0 0 chr4 85008664 85008922 -117319425 - AluY SINE Alu -16 295 38 8175 203 37 30 chr4 85008922 85008977 -117319370 - L1MC1 LINE L1 -1674 4642 4589 2809 121 31 0 chr4 85008977 85009398 -117318949 + MER57B LTR ERV1 1 434 0 8175 203 37 30 chr4 85009398 85010790 -117317557 - L1MC1 LINE L1 -1727 4589 3166 296 303 96 20 chr4 85011958 85012384 -117315963 - L1MC1 LINE L1 -3381 2748 2190 2274 89 0 0 chr4 85012384 85012689 -117315658 - AluY SINE Alu 0 305 1 296 303 96 20 chr4 85012689 85012759 -117315588 - L1MC1 LINE L1 -3939 2190 2127 474 274 121 22 chr4 85013077 85013352 -117314995 - L1MC1 LINE L1 -861 1629 1197 1654 221 61 29 chr4 85013398 85013841 -117314506 + MLT1F LTR MaLR 67 523 -19 375 272 117 17 chr4 85013890 85014129 -117314218 - L1MC1 LINE L1 -4895 1224 962 1899 262 143 11 chr4 85014140 85014870 -117313477 - L1ME2 LINE L1 -1 6146 5321 * 22909 98 20 6 chr4 85014864 85019069 -117309278 - L1PA7 LINE L1 -2 6467 2211 9751 99 26 1 chr4 85019062 85020417 -117307930 - L1PA7 LINE L1 -5072 1389 1 * 430 131 29 35 chr4 85020418 85020546 -117307801 - L1ME2 LINE L1 -812 5333 5205 2002 254 146 11 chr4 85020550 85021506 -117306841 - L1ME2 LINE L1 -1050 5079 3995 985 336 68 37 chr4 85021838 85022650 -117305697 - L1ME2 LINE L1 -5279 840 4 251 266 138 11 chr4 85023232 85023326 -117305021 + MIR SINE MIR 157 262 0 28 48 0 0 chr4 85023836 85023878 -117304469 + AT_rich Low_complexity Low_complexity 1 42 0 346 270 78 17 chr4 85024863 85024978 -117303369 + MIR SINE MIR 23 144 -118 596 277 11 6 chr4 85025240 85025417 -117302930 + MER5B DNA MER1_type 1 178 0 334 350 49 14 chr4 85026072 85026215 -117302132 + MIR SINE MIR 32 179 -83 484 246 162 12 chr4 85026911 85027078 -117301269 - LTR16A LTR ERVL -8 442 251 292 309 25 0 chr4 85027381 85027462 -117300885 + MIR SINE MIR 9 91 -171 250 200 33 100 chr4 85027588 85027678 -117300669 + MIR SINE MIR 177 260 -2 205 250 188 10 chr4 85027680 85027776 -117300571 - L2 LINE L2 0 3313 3201 278 262 0 0 chr4 85028378 85028439 -117299908 + (CATA)n Simple_repeat Simple_repeat 3 63 0 2284 91 0 25 chr4 85028469 85028787 -117299560 + AluY SINE Alu 1 310 -1 3245 106 20 4 chr4 85028934 85029434 -117298913 + L1MA2 LINE L1 5797 6304 0 24 53 0 0 chr4 85029434 85029472 -117298875 + AT_rich Low_complexity Low_complexity 1 38 0 1842 169 18 0 chr4 85029992 85030294 -117298053 - AluJo SINE Alu 0 307 1 900 216 72 0 chr4 85030306 85030500 -117297847 - MER3 DNA MER1_type 0 209 2 21 36 0 0 chr4 85032244 85032272 -117296075 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr4 85033413 85033449 -117294898 + AT_rich Low_complexity Low_complexity 1 36 0 5425 37 0 0 chr4 85033594 85034237 -117294110 - L1PA5 LINE L1 -3 6151 5509 311 229 108 0 chr4 85034948 85035031 -117293316 + LTR33 LTR ERVL 1 92 -429 317 316 32 59 chr4 85035619 85035806 -117292541 - L2 LINE L2 -8 3305 3124 315 301 89 0 chr4 85035848 85035971 -117292376 + MER94 DNA DNA 1 134 0 180 300 114 0 chr4 85036695 85036765 -117291582 + MIR3 SINE MIR 93 170 -38 431 214 79 42 chr4 85036765 85036980 -117291367 + L1MC5 LINE L1 7638 7860 -101 29 28 0 0 chr4 85037008 85037044 -117291303 + AT_rich Low_complexity Low_complexity 1 36 0 477 252 74 0 chr4 85038432 85038567 -117289780 + MER104 DNA Tc2 18 162 -18 240 278 22 11 chr4 85039059 85039149 -117289198 + (CAGAGA)n Simple_repeat Simple_repeat 2 92 0 22 35 0 0 chr4 85040277 85040306 -117288041 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr4 85041707 85041732 -117286615 + AT_rich Low_complexity Low_complexity 1 25 0 219 250 120 46 chr4 85042316 85042424 -117285923 - MIR3 SINE MIR -7 201 86 41919 38 22 7 chr4 85042740 85043877 -117284470 + L1PA3 LINE L1 3 1122 -5055 2679 13 0 13 chr4 85043877 85044182 -117284165 + AluYa5 SINE Alu 1 301 -10 41919 38 22 7 chr4 85044182 85049129 -117279218 + L1PA3 LINE L1 1122 6177 0 1659 234 81 53 chr4 85050346 85050954 -117277393 - MLT1E2 LTR MaLR -1 625 1 264 361 32 19 chr4 85051067 85051222 -117277125 + MIR SINE MIR 99 255 -7 709 281 91 6 chr4 85051280 85051603 -117276744 + MLT1J1 LTR MaLR 58 471 -40 363 158 36 129 chr4 85052388 85052527 -117275820 + MER112 DNA MER1_type 1 126 -134 360 0 0 0 chr4 85052848 85052888 -117275459 + (CA)n Simple_repeat Simple_repeat 2 41 0 272 305 85 49 chr4 85053144 85053308 -117275039 - MIR3 SINE MIR -1 207 38 375 270 61 34 chr4 85053570 85053718 -117274629 - MER5A DNA MER1_type 0 189 38 21 36 0 0 chr4 85057007 85057035 -117271312 + AT_rich Low_complexity Low_complexity 1 28 0 235 300 222 0 chr4 85057262 85057352 -117270995 + L2 LINE L2 3162 3271 -1 26 0 0 0 chr4 85057873 85057899 -117270448 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 85058246 85058267 -117270080 + AT_rich Low_complexity Low_complexity 1 21 0 478 281 55 20 chr4 85059466 85059612 -117268735 - MER5A DNA MER1_type -4 185 35 2944 118 9 13 chr4 85059986 85060445 -117267902 - L1PA10 LINE L1 -3 6165 5709 542 274 73 25 chr4 85060939 85061143 -117267204 + MIR SINE MIR 49 262 0 324 227 91 11 chr4 85061349 85061437 -117266910 + MIR SINE MIR 31 125 -137 332 319 52 7 chr4 85061776 85061911 -117266436 - L2 LINE L2 0 3313 3173 528 348 89 8 chr4 85063366 85063602 -117264745 + MIR SINE MIR 6 260 -2 204 330 157 0 chr4 85064350 85064465 -117263882 - MIR SINE MIR -33 229 97 192 396 19 0 chr4 85065451 85065557 -117262790 - L2 LINE L2 -16 3297 3190 201 193 0 35 chr4 85065749 85065806 -117262541 + CT-rich Low_complexity Low_complexity 4 58 0 2236 70 21 3 chr4 85066409 85066696 -117261651 + AluY SINE Alu 1 292 -19 2945 259 87 77 chr4 85067285 85067687 -117260660 + L1ME3A LINE L1 1072 1469 -4937 2007 127 0 29 chr4 85067687 85068001 -117260346 + AluSc SINE Alu 1 305 -4 2945 259 87 77 chr4 85068001 85068703 -117259644 + L1ME3A LINE L1 1469 2163 -4243 2155 98 35 3 chr4 85068703 85069018 -117259329 + AluSq SINE Alu 1 324 0 2945 259 87 77 chr4 85069018 85069677 -117258670 + L1ME3A LINE L1 2163 2814 -3592 1921 48 8 8 chr4 85069677 85069926 -117258421 - L1PA4 LINE L1 0 6155 5907 2945 259 87 77 chr4 85069926 85072025 -117256322 + L1ME3A LINE L1 2814 5059 -1347 23632 126 17 79 chr4 85072030 85076677 -117251670 + L1P LINE L1 2 4357 -1789 7694 23 0 0 chr4 85076677 85077936 -117250411 + L1PA3 LINE L1 4952 6210 0 227 283 28 28 chr4 85077936 85078042 -117250305 + Charlie1 DNA MER1_type 2264 2369 -392 3212 34 0 0 chr4 85078234 85078615 -117249732 + L1PA3 LINE L1 5770 6150 -5 6832 99 6 1 chr4 85078627 85080442 -117247905 + L1PA7 LINE L1 4345 6154 0 1911 251 71 25 chr4 85080564 85081250 -117247097 + L1ME3A LINE L1 5634 6351 -79 186 339 0 17 chr4 85081292 85081351 -117246996 + MIR SINE MIR 26 83 -125 * 411 274 13 65 chr4 85081340 85081493 -117246854 + MIR SINE MIR 43 187 -75 804 264 52 24 chr4 85082085 85082335 -117246012 + MIR SINE MIR 4 260 -2 2185 105 0 16 chr4 85082403 85082716 -117245631 + AluSq SINE Alu 1 308 -5 191 347 143 0 chr4 85082973 85083071 -117245276 + L2 LINE L2 3141 3252 -20 505 211 25 141 chr4 85083713 85083912 -117244435 + MER5B DNA MER1_type 1 176 -2 204 207 35 35 chr4 85084000 85084058 -117244289 + (TTAA)n Simple_repeat Simple_repeat 4 61 0 2435 153 77 4 chr4 85084220 85084685 -117243662 - L1MB3 LINE L1 0 6183 5685 1904 240 45 34 chr4 85084768 85085276 -117243071 + MLT1E LTR MaLR 78 591 -2 36 0 0 0 chr4 85085543 85085579 -117242768 + AT_rich Low_complexity Low_complexity 1 36 0 213 39 0 0 chr4 85085606 85085632 -117242715 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 220 214 282 0 chr4 85086398 85086501 -117241846 + MIR SINE MIR 65 196 -66 24 67 0 0 chr4 85088177 85088222 -117240125 + AT_rich Low_complexity Low_complexity 1 45 0 812 298 12 12 chr4 85088281 85088523 -117239824 + MIR SINE MIR 11 252 -10 286 347 111 7 chr4 85089459 85089603 -117238744 + MIR3 SINE MIR 40 198 -10 260 194 30 15 chr4 85089858 85089925 -117238422 - MER3 DNA MER1_type 0 209 142 829 174 7 7 chr4 85089955 85090099 -117238248 - MER3 DNA MER1_type -65 144 1 408 240 173 58 chr4 85092533 85092862 -117235485 + L2 LINE L2 2947 3313 0 2281 79 122 15 chr4 85094966 85095295 -117233052 + THE1B LTR MaLR 1 364 0 271 320 102 0 chr4 85096853 85096981 -117231366 + MIR SINE MIR 88 228 -34 1271 191 27 27 chr4 85097137 85097399 -117230948 - AluJo SINE Alu -13 299 38 228 347 16 8 chr4 85098274 85098398 -117229949 + MIR SINE MIR 138 262 0 5367 201 37 46 chr4 85098477 85100149 -117228198 + L1MC2 LINE L1 4690 6336 -8 369 331 131 23 chr4 85101216 85101566 -117226781 - L2 LINE L2 -785 2529 2142 254 339 9 9 chr4 85101863 85101972 -117226375 - L2 LINE L2 -915 2399 2291 201 195 0 0 chr4 85102938 85102979 -117225368 + GA-rich Low_complexity Low_complexity 2 42 0 206 128 26 0 chr4 85104020 85104059 -117224288 + GA-rich Low_complexity Low_complexity 4 43 0 1903 155 26 9 chr4 85105334 85105676 -117222671 - L1PB4 LINE L1 -15 6141 5794 297 0 0 0 chr4 85105676 85105709 -117222638 + (TG)n Simple_repeat Simple_repeat 2 34 0 445 175 10 21 chr4 85105783 85105797 -117222550 - L1PB4 LINE L1 -359 5797 5784 331 56 37 0 chr4 85105797 85105851 -117222496 + (TA)n Simple_repeat Simple_repeat 1 56 0 445 175 10 21 chr4 85105851 85105933 -117222414 - L1PB4 LINE L1 -372 5784 5702 341 243 108 0 chr4 85105961 85106072 -117222275 - MER112 DNA MER1_type -11 249 127 212 250 109 43 chr4 85106155 85106247 -117222100 - MIR3 SINE MIR -109 99 2 460 313 56 28 chr4 85106302 85106516 -117221831 - L2 LINE L2 0 3313 3094 539 312 34 26 chr4 85106536 85106802 -117221545 - MLT1L LTR MaLR -21 594 327 350 232 232 7 chr4 85107193 85107335 -117221012 - MIR SINE MIR -28 234 61 232 331 163 19 chr4 85108386 85108546 -117219801 + L2 LINE L2 3029 3211 -61 27 0 0 0 chr4 85108570 85108597 -117219750 + AT_rich Low_complexity Low_complexity 1 27 0 543 90 0 0 chr4 85109025 85109103 -117219244 + (TC)n Simple_repeat Simple_repeat 1 78 0 24 53 0 0 chr4 85109507 85109545 -117218802 + AT_rich Low_complexity Low_complexity 1 38 0 228 315 81 9 chr4 85109710 85109821 -117218526 + L2 LINE L2 685 803 -2511 300 311 113 7 chr4 85110504 85110655 -117217692 + L2 LINE L2 854 1020 -2294 316 302 31 38 chr4 85110849 85111008 -117217339 + L1ME LINE L1 5553 5710 -452 383 307 112 37 chr4 85111395 85111645 -117216702 - L2 LINE L2 -133 3180 2896 2018 161 13 24 chr4 85111645 85112023 -117216324 - THE1C LTR MaLR 0 375 2 383 307 112 37 chr4 85112023 85112162 -117216185 - L2 LINE L2 -417 2896 2769 296 346 69 5 chr4 85112164 85112352 -117215995 + L2 LINE L2 1212 1411 -1903 1435 201 32 74 chr4 85112355 85112762 -117215585 + MLT1B LTR MaLR 1 390 0 598 176 88 15 chr4 85112776 85112912 -117215435 - MIR SINE MIR -16 246 101 221 335 67 28 chr4 85112925 85113104 -117215243 + L2 LINE L2 1427 1612 -1702 983 292 119 70 chr4 85113143 85113215 -117215132 + L2 LINE L2 1755 1822 -1492 2358 158 63 47 chr4 85113215 85113354 -117214993 - MLT1D LTR MaLR 0 505 370 1912 127 13 17 chr4 85113354 85113653 -117214694 + AluSx SINE Alu 1 298 -14 2358 158 63 47 chr4 85113653 85114008 -117214339 - MLT1D LTR MaLR -135 370 3 983 292 119 70 chr4 85114008 85114878 -117213469 + L2 LINE L2 1822 2743 -571 225 83 0 0 chr4 85115039 85115075 -117213272 + (TG)n Simple_repeat Simple_repeat 2 37 0 186 316 13 40 chr4 85115180 85115256 -117213091 + L2 LINE L2 3240 3313 0 234 255 0 0 chr4 85116528 85116575 -117211772 + L2 LINE L2 3264 3310 -3 1888 156 0 14 chr4 85116957 85117252 -117211095 + AluJo SINE Alu 1 291 -21 1773 182 91 14 chr4 85117498 85117981 -117210366 - Charlie1b DNA MER1_type -1 522 3 22 0 0 0 chr4 85118104 85118126 -117210221 + AT_rich Low_complexity Low_complexity 1 22 0 201 250 0 0 chr4 85118172 85118216 -117210131 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 246 146 0 0 chr4 85118574 85118615 -117209732 - L2 LINE L2 -4 3309 3269 1958 137 50 25 chr4 85118916 85119280 -117209067 + THE1C LTR MaLR 1 373 -2 9470 130 12 42 chr4 85119285 85120911 -117207436 + THE1C-int LTR MaLR 4 1580 0 1712 128 97 34 chr4 85120911 85121263 -117207084 + THE1C LTR MaLR 1 374 -1 1761 207 83 7 chr4 85121652 85122086 -117206261 - MLT1C LTR MaLR 0 467 1 306 0 0 0 chr4 85122122 85122156 -117206191 + (TGG)n Simple_repeat Simple_repeat 3 36 0 245 401 18 53 chr4 85122361 85122757 -117205590 - L2 LINE L2 -557 2757 2376 498 339 104 50 chr4 85122896 85123513 -117204834 + L2 LINE L2 2325 2974 -340 3141 125 51 138 chr4 85124487 85125335 -117203012 - LTR1 LTR ERV1 0 785 12 490 296 154 47 chr4 85125859 85126032 -117202315 + L2 LINE L2 2563 2716 -597 2364 71 7 0 chr4 85126032 85126329 -117202018 + AluSc SINE Alu 1 299 -10 490 296 154 47 chr4 85126329 85126811 -117201536 + L2 LINE L2 2716 3311 -2 330 288 123 29 chr4 85126840 85127010 -117201337 + L2 LINE L2 3128 3313 0 26 30 0 0 chr4 85127142 85127175 -117201172 + AT_rich Low_complexity Low_complexity 1 33 0 217 248 7 46 chr4 85127183 85127336 -117201011 + (TTAA)n Simple_repeat Simple_repeat 2 148 0 606 227 0 23 chr4 85127537 85127669 -117200678 - FLAM_A SINE Alu -4 129 1 1241 195 95 91 chr4 85127833 85127989 -117200358 + MLT1H LTR MaLR 83 237 -312 11842 79 17 1 chr4 85127989 85130369 -117197978 + L1PA7 LINE L1 3749 6154 0 1241 195 95 91 chr4 85130369 85130533 -117197814 + MLT1H LTR MaLR 237 408 -141 1105 203 91 104 chr4 85130533 85131006 -117197341 - MLT1C LTR MaLR 0 467 1 1241 195 95 91 chr4 85131006 85131146 -117197201 + MLT1H LTR MaLR 408 546 -3 2477 158 29 2 chr4 85132059 85132470 -117195877 - MSTB LTR MaLR 0 426 5 312 294 127 57 chr4 85134033 85134245 -117194102 - MIR SINE MIR -6 256 31 1685 133 19 19 chr4 85134566 85134883 -117193464 + L1MA5 LINE L1 5984 6300 0 740 227 46 67 chr4 85134892 85135130 -117193217 + MIR SINE MIR 20 252 -10 295 257 292 0 chr4 85135311 85135455 -117192892 + MIR SINE MIR 2 187 -75 31 0 0 0 chr4 85135566 85135597 -117192750 + AT_rich Low_complexity Low_complexity 1 31 0 745 199 0 0 chr4 85135674 85135805 -117192542 - FLAM_C SINE Alu -2 131 1 332 352 157 0 chr4 85135847 85136006 -117192341 - MIR SINE MIR -51 211 28 483 47 0 0 chr4 85137916 85137980 -117190367 - L1PA5 LINE L1 -1 6153 6090 2379 156 44 9 chr4 85138225 85138680 -117189667 + L1MB2 LINE L1 5696 6166 -5 4994 156 10 19 chr4 85138681 85139868 -117188479 - L1PB4 LINE L1 0 6156 4973 6122 114 10 22 chr4 85139868 85140914 -117187433 - L1MA3 LINE L1 -1 6304 5272 1808 157 22 11 chr4 85140902 85141258 -117187089 - L1PB4 LINE L1 -1152 4994 4635 * 23 0 0 0 chr4 85141262 85141285 -117187062 + AT_rich Low_complexity Low_complexity 1 23 0 419 233 0 0 chr4 85142225 85142311 -117186036 + MER3 DNA MER1_type 2 87 -122 625 266 65 48 chr4 85142620 85142910 -117185437 + LTR16A1 LTR ERVL 161 455 -2 1279 156 71 146 chr4 85143039 85143450 -117184897 + MLT1B LTR MaLR 11 390 0 21 0 0 0 chr4 85143589 85143610 -117184737 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 85144755 85144779 -117183568 + AT_rich Low_complexity Low_complexity 1 24 0 268 303 27 81 chr4 85146977 85147162 -117181185 - MLT1K LTR MaLR -411 177 3 195 186 169 0 chr4 85147286 85147345 -117181002 - L2 LINE L2 -200 3072 3004 269 323 38 32 chr4 85149822 85150008 -117178339 - MARNA DNA Mariner -379 207 21 719 287 10 5 chr4 85150132 85150341 -117178006 + MER63A DNA MER1_type 1 210 0 299 130 19 0 chr4 85151711 85151765 -117176582 + GA-rich Low_complexity Low_complexity 2 56 0 797 271 122 11 chr4 85152731 85152993 -117175354 - L2 LINE L2 0 3313 3023 2519 51 0 3 chr4 85153102 85153414 -117174933 - AluY SINE Alu 0 311 1 13238 211 42 29 chr4 85153430 85158881 -117169466 - L1MA5 LINE L1 0 7002 1443 4925 74 30 2 chr4 85159185 85159824 -117168523 - PABL_A LTR ERV1 -2 658 2 1933 168 0 0 chr4 85159932 85160229 -117168118 + AluSx SINE Alu 1 297 -15 383 219 0 0 chr4 85160789 85160862 -117167485 + MER5A DNA MER1_type 9 81 -108 379 238 245 3 chr4 85161064 85161332 -117167015 - MLT1F LTR MaLR -6 536 218 360 202 58 10 chr4 85162658 85162762 -117165585 + L1MA9 LINE L1 4418 4526 -1620 1532 169 100 0 chr4 85162765 85163055 -117165292 + L1PA16 LINE L1 5825 6143 -23 4239 167 38 2 chr4 85163116 85164372 -117163975 + L1MA9 LINE L1 4491 5793 -498 330 247 41 10 chr4 85164377 85164474 -117163873 - L1MC4 LINE L1 -1339 6703 6604 389 42 56 0 chr4 85164478 85164550 -117163797 + (TA)n Simple_repeat Simple_repeat 1 76 0 2491 153 102 0 chr4 85164552 85165034 -117163313 + L1MA9 LINE L1 5782 6312 0 926 211 6 0 chr4 85165183 85165363 -117162984 - LTR16C LTR ERVL 0 491 311 2262 115 3 0 chr4 85165603 85165908 -117162439 + AluSq SINE Alu 1 306 -7 527 366 21 0 chr4 85167087 85167273 -117161074 - MIR SINE MIR -51 211 22 6923 68 23 4 chr4 85167454 85168753 -117159594 - L1PA8 LINE L1 0 6172 4868 245 174 0 0 chr4 85168753 85168799 -117159548 + L1PA8 LINE L1 4826 4871 -1275 341 219 0 9 chr4 85168922 85169027 -117159320 + (TA)n Simple_repeat Simple_repeat 1 104 0 29 60 0 0 chr4 85169623 85169673 -117158674 + AT_rich Low_complexity Low_complexity 1 50 0 1101 223 43 64 chr4 85170857 85171233 -117157114 + MLT1B LTR MaLR 23 390 0 659 300 96 9 chr4 85172268 85172498 -117155849 + MIR SINE MIR 8 257 -5 1246 264 60 51 chr4 85172782 85172978 -117155369 + L2 LINE L2 2493 2686 -627 1184 201 129 33 chr4 85172978 85173311 -117155036 - MLT1A1 LTR MaLR 0 365 1 1246 264 60 51 chr4 85173311 85173650 -117154697 + L2 LINE L2 2686 3041 -272 2114 108 0 10 chr4 85173650 85173947 -117154400 - AluSc SINE Alu -13 296 3 1246 264 60 51 chr4 85173947 85174215 -117154132 + L2 LINE L2 3041 3305 -8 2295 100 3 6 chr4 85177853 85178164 -117150183 - AluSx SINE Alu -2 310 1 299 301 70 51 chr4 85178929 85179085 -117149262 - MIR SINE MIR -6 256 98 345 293 0 28 chr4 85180228 85180334 -117148013 - MER5A DNA MER1_type 0 189 87 197 220 288 34 chr4 85180374 85180492 -117147855 + L2 LINE L2 3091 3238 -75 27 29 0 0 chr4 85182008 85182042 -117146305 + AT_rich Low_complexity Low_complexity 1 34 0 28 0 0 0 chr4 85182207 85182235 -117146112 + AT_rich Low_complexity Low_complexity 1 28 0 1311 258 133 55 chr4 85182288 85183266 -117145081 + HAL1 LINE L1 1336 2389 -118 1864 207 20 0 chr4 85183494 85183852 -117144495 + MER63 DNA MER1_type 696 1060 0 488 58 0 14 chr4 85183904 85183973 -117144374 + (TGGA)n Simple_repeat Simple_repeat 3 70 0 213 286 0 0 chr4 85184501 85184557 -117143790 + MIR SINE MIR 201 256 -6 665 241 139 0 chr4 85184701 85184888 -117143459 + MIR SINE MIR 49 261 -1 2154 225 71 37 chr4 85185487 85185517 -117142830 + MLT1G LTR MaLR 11 39 -551 1869 139 26 45 chr4 85185517 85185898 -117142449 + THE1C LTR MaLR 1 374 -1 10025 126 13 37 chr4 85185898 85187517 -117140830 + THE1C-int LTR MaLR 1 1580 0 1975 147 11 29 chr4 85187517 85187897 -117140450 + THE1C LTR MaLR 1 373 -2 2154 225 71 37 chr4 85187897 85188425 -117139922 + MLT1G LTR MaLR 38 590 0 1982 128 24 0 chr4 85189213 85189501 -117138846 - AluSx SINE Alu -17 295 1 278 205 48 36 chr4 85189615 85189698 -117138649 - MIR SINE MIR -69 193 110 191 290 70 30 chr4 85189823 85189923 -117138424 - MIR SINE MIR -70 192 89 2502 243 108 10 chr4 85190058 85191109 -117137238 - MER69B DNA AcHobo -42 1184 1 365 401 44 18 chr4 85191678 85191905 -117136442 + L3 LINE CR1 39 271 -1306 1405 98 69 16 chr4 85192850 85193095 -117135252 - L1MA4A LINE L1 -22 6281 6024 2237 108 0 3 chr4 85193170 85193466 -117134881 - AluSg1 SINE Alu -14 295 1 353 347 30 12 chr4 85193480 85193647 -117134700 - MIR3 SINE MIR -11 197 28 213 306 102 28 chr4 85193639 85193747 -117134600 - L2 LINE L2 -14 3258 3143 * 916 192 49 25 chr4 85193812 85194015 -117134332 - MER63A DNA MER1_type -1 209 2 252 258 0 15 chr4 85194291 85194357 -117133990 + MIR SINE MIR 182 246 -16 4492 170 18 47 chr4 85194712 85195117 -117133230 + L1MA9 LINE L1 4909 5324 -988 1863 81 4 0 chr4 85195117 85195365 -117132982 - L1PA7 LINE L1 0 6154 5906 4492 170 18 47 chr4 85195365 85196128 -117132219 + L1MA9 LINE L1 5324 6042 -270 2036 138 6 28 chr4 85196128 85196446 -117131901 + AluJo SINE Alu 1 311 -1 4492 170 18 47 chr4 85196446 85196673 -117131674 + L1MA9 LINE L1 6042 6274 -38 426 335 59 24 chr4 85196799 85197053 -117131294 + L3 LINE CR1 468 730 -847 465 169 0 0 chr4 85197984 85198073 -117130274 + L1 LINE L1 4555 4643 -1503 4088 19 0 4 chr4 85198073 85198551 -117129796 - L1PA2 LINE L1 0 6155 5680 409 30 119 30 chr4 85198551 85198596 -117129751 + L1PA2 LINE L1 5619 5673 -482 5391 138 20 3 chr4 85198596 85200128 -117128219 + L1PA15 LINE L1 4628 6165 0 285 329 91 37 chr4 85202077 85202320 -117126027 - L2 LINE L2 -35 3237 2982 278 331 35 7 chr4 85202288 85202430 -117125917 - L2 LINE L2 -823 2491 2346 * 528 302 56 6 chr4 85202464 85202643 -117125704 + MIR SINE MIR 1 188 -74 2358 95 3 0 chr4 85202700 85202996 -117125351 + AluSp SINE Alu 1 297 -16 185 263 40 66 chr4 85203990 85204066 -117124281 + MIR3 SINE MIR 1 74 -134 1298 202 0 0 chr4 85204862 85205114 -117123233 - MER68 LTR ERV1 -7 555 304 281 282 26 0 chr4 85206124 85206202 -117122145 - MIR SINE MIR -27 235 156 22 0 0 0 chr4 85206377 85206399 -117121948 + AT_rich Low_complexity Low_complexity 1 22 0 292 327 55 18 chr4 85207386 85207496 -117120851 + MIR SINE MIR 1 114 -148 629 179 8 0 chr4 85208354 85208471 -117119876 - MER45A DNA AcHobo 0 178 61 2218 127 0 7 chr4 85209561 85209860 -117118487 - AluSx SINE Alu -15 297 1 1588 262 40 42 chr4 85209910 85210529 -117117818 + L1PA10 LINE L1 10 627 -5834 16198 135 14 2 chr4 85210532 85214056 -117114291 + L1PA10 LINE L1 2961 6483 0 22 0 0 0 chr4 85214120 85214142 -117114205 + AT_rich Low_complexity Low_complexity 1 22 0 37 62 0 0 chr4 85214243 85214308 -117114039 + AT_rich Low_complexity Low_complexity 1 65 0 327 49 0 0 chr4 85214315 85214356 -117113991 + (CA)n Simple_repeat Simple_repeat 2 42 0 244 278 52 9 chr4 85214372 85214487 -117113860 + HAL1b LINE L1 1204 1323 -25 210 344 117 23 chr4 85214631 85214759 -117113588 + L2 LINE L2 3127 3266 -6 282 29 0 0 chr4 85215376 85215411 -117112936 + (TG)n Simple_repeat Simple_repeat 2 36 0 2314 101 0 0 chr4 85215657 85215954 -117112393 + AluSx SINE Alu 1 297 -15 4030 160 11 15 chr4 85217128 85218049 -117110298 + L1MB7 LINE L1 5101 6019 -165 202 306 172 45 chr4 85218195 85218352 -117109995 + MIR SINE MIR 15 191 -71 604 141 0 0 chr4 85218506 85218605 -117109742 - L1PB1 LINE L1 -4 6147 6049 368 280 48 24 chr4 85219530 85219655 -117108692 + MIR SINE MIR 6 133 -129 888 212 86 75 chr4 85220645 85221031 -117107316 - MLT1B LTR MaLR 0 390 1 390 371 70 5 chr4 85221799 85221985 -117106362 + MIR SINE MIR 1 198 -64 395 244 17 0 chr4 85222900 85223019 -117105328 - L1ME3A LINE L1 -301 5869 5749 650 173 0 0 chr4 85223033 85223143 -117105204 + U5 snRNA snRNA 4 113 -3 39 50 0 0 chr4 85223148 85223208 -117105139 + AT_rich Low_complexity Low_complexity 1 60 0 230 150 83 0 chr4 85223210 85223270 -117105077 - L1ME3A LINE L1 -416 5746 5682 401 274 57 51 chr4 85223287 85223462 -117104885 + L1ME LINE L1 841 1016 -5054 287 318 61 26 chr4 85223495 85223836 -117104511 + MLT1K LTR MaLR 155 555 -33 584 270 26 26 chr4 85224744 85224970 -117103377 + Charlie8 DNA MER1_type 1 226 -2191 3048 178 32 75 chr4 85225496 85226349 -117101998 - L1PA12 LINE L1 0 6168 5353 * 12728 212 28 18 chr4 85226346 85226598 -117101749 - L1PA13 LINE L1 -2 6218 5970 1754 101 121 38 chr4 85226598 85226944 -117101403 + THE1C LTR MaLR 1 375 0 12728 212 28 18 chr4 85226944 85227372 -117100975 - L1PA13 LINE L1 -250 5970 5548 267 31 0 0 chr4 85227372 85227404 -117100943 + (TTG)n Simple_repeat Simple_repeat 2 33 0 12728 212 28 18 chr4 85227404 85228905 -117099442 - L1PA13 LINE L1 -672 5548 4064 2244 123 12 0 chr4 85228905 85229245 -117099102 - L1PA16 LINE L1 -4 6162 5819 12728 212 28 18 chr4 85229245 85232435 -117095912 - L1PA13 LINE L1 -2156 4064 711 2047 76 3 0 chr4 85232598 85232887 -117095460 - L1PA6 LINE L1 -1141 5005 4716 7205 52 0 0 chr4 85232887 85234035 -117094312 + L1PA6 LINE L1 5007 6154 0 31 0 0 0 chr4 85234035 85234066 -117094281 + AT_rich Low_complexity Low_complexity 1 31 0 455 374 62 36 chr4 85234885 85235302 -117093045 - L1M2 LINE L1 -6412 437 10 1141 258 138 15 chr4 85235432 85235920 -117092427 - MLT1G1 LTR MaLR 0 595 10 232 308 22 22 chr4 85235927 85236018 -117092329 + MER5A DNA MER1_type 54 144 -45 804 266 101 17 chr4 85236449 85236746 -117091601 - LTR16C LTR ERVL -11 480 159 307 247 62 25 chr4 85236951 85237032 -117091315 - MIR SINE MIR -160 102 19 219 289 10 0 chr4 85238169 85238266 -117090081 + (TA)n Simple_repeat Simple_repeat 1 98 0 487 273 19 0 chr4 85238453 85238607 -117089740 + Charlie8 DNA MER1_type 118 274 -2143 293 279 129 43 chr4 85239295 85239435 -117088912 + L2 LINE L2 3162 3313 0 652 280 31 10 chr4 85240016 85240209 -117088138 - MIR SINE MIR -48 214 18 2071 124 137 13 chr4 85242183 85242562 -117085785 + MSTA LTR MaLR 3 428 0 1414 186 36 52 chr4 85242641 85243006 -117085341 - MLT1A2 LTR MaLR -11 363 5 23 54 0 0 chr4 85243260 85243297 -117085050 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 85244195 85244230 -117084117 + AT_rich Low_complexity Low_complexity 1 35 0 185 252 26 9 chr4 85244841 85244956 -117083391 + GA-rich Low_complexity Low_complexity 2 118 0 4520 133 23 16 chr4 85245400 85246194 -117082153 + L1PA16 LINE L1 5368 6166 0 358 301 49 16 chr4 85247104 85247227 -117081120 + MER5A DNA MER1_type 54 180 -9 180 111 0 0 chr4 85247240 85247267 -117081080 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 242 315 196 0 chr4 85247267 85247359 -117080988 - L2 LINE L2 -13 3259 3150 2193 94 0 14 chr4 85248649 85248946 -117079401 + AluY SINE Alu 1 293 -18 237 108 0 0 chr4 85249104 85249141 -117079206 + (TG)n Simple_repeat Simple_repeat 2 38 0 563 249 182 22 chr4 85249370 85249595 -117078752 - MIR SINE MIR 0 262 2 430 250 195 8 chr4 85251680 85251808 -117076539 - MER5A DNA MER1_type -6 183 32 411 289 41 16 chr4 85252017 85252138 -117076209 + MIR SINE MIR 21 144 -64 260 276 99 21 chr4 85252286 85252478 -117075869 + L1ME LINE L1 5612 5818 -303 226 268 18 0 chr4 85252703 85252759 -117075588 + MIR3 SINE MIR 149 205 -3 2145 119 0 39 chr4 85254017 85254327 -117074020 + AluSq SINE Alu 1 298 -15 234 239 0 0 chr4 85254328 85254395 -117073952 - HAL1b LINE L1 -35 1313 1247 235 250 29 7 chr4 85254401 85254537 -117073810 + (TA)n Simple_repeat Simple_repeat 2 140 0 393 22 0 0 chr4 85255927 85255973 -117072374 + (CA)n Simple_repeat Simple_repeat 2 47 0 305 285 167 14 chr4 85256279 85256423 -117071924 + MIR SINE MIR 25 190 -72 1035 135 34 216 chr4 85256724 85257169 -117071178 - THE1B LTR MaLR 0 364 1 1753 149 3 78 chr4 85257637 85257959 -117070388 + AluJb SINE Alu 1 298 -14 9401 170 13 7 chr4 85257967 85261246 -117067101 - L1MA3 LINE L1 0 7724 3653 1276 186 0 3 chr4 85261238 85261619 -117066728 - L1M1 LINE L1 -743 5403 5105 * 19451 138 70 8 chr4 85261629 85265040 -117063307 - L1MA3 LINE L1 -3921 3644 24 277 274 45 96 chr4 85265294 85265451 -117062896 + L2 LINE L2 2945 3093 -179 258 265 0 15 chr4 85266649 85266717 -117061630 - Tigger2 DNA MER2_type -10 2708 2642 753 89 0 0 chr4 85266717 85266818 -117061529 + AluSg/x SINE Alu 195 295 -17 907 162 29 54 chr4 85266818 85267022 -117061325 - Tigger2 DNA MER2_type -59 2659 2461 4523 137 12 3 chr4 85267084 85267821 -117060526 - Tigger2 DNA MER2_type -1974 744 1 773 251 26 44 chr4 85268007 85268234 -117060113 - MER58A DNA MER1_type 0 224 2 2068 93 53 26 chr4 85268277 85268579 -117059768 - AluSx SINE Alu -2 310 1 21 0 0 0 chr4 85269847 85269868 -117058479 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 85271227 85271254 -117057093 + AT_rich Low_complexity Low_complexity 1 27 0 703 208 19 19 chr4 85271470 85271624 -117056723 - MER63 DNA MER1_type -56 780 1 457 189 144 28 chr4 85272186 85272366 -117055981 - HsTC2 DNA Tc2 0 1898 1698 360 242 273 8 chr4 85272687 85272815 -117055532 + MER5B DNA MER1_type 17 178 0 23439 60 3 0 chr4 85273376 85277337 -117051010 + L1PA6 LINE L1 2183 6154 0 1757 155 3 46 chr4 85277605 85277928 -117050419 - AluJb SINE Alu -1 311 3 247 175 105 18 chr4 85278131 85278188 -117050159 + MLT1K LTR MaLR 511 572 -16 323 306 65 8 chr4 85278357 85278481 -117049866 + MIR3 SINE MIR 15 145 -63 839 206 144 10 chr4 85278507 85278701 -117049646 - MER58A DNA MER1_type 0 224 5 226 318 0 0 chr4 85278733 85278799 -117049548 + L1MC4a LINE L1 7323 7388 -420 324 307 96 62 chr4 85278937 85278970 -117049377 + L1MC4 LINE L1 7596 7626 -416 1381 192 21 31 chr4 85278970 85279261 -117049086 - AluJo SINE Alu -24 288 1 324 307 96 62 chr4 85279261 85279582 -117048765 + L1MC4 LINE L1 7626 7962 -80 620 51 0 0 chr4 85281168 85281247 -117047100 - MADE1 DNA Mariner 0 80 2 2549 65 0 7 chr4 85282417 85282725 -117045622 + AluY SINE Alu 1 306 -5 2127 133 0 3 chr4 85282738 85283032 -117045315 + AluSg SINE Alu 4 296 -14 419 302 124 22 chr4 85283266 85283491 -117044856 - MIR SINE MIR -12 250 3 411 272 10 0 chr4 85284590 85284693 -117043654 + MIR SINE MIR 159 262 0 252 286 51 41 chr4 85286528 85286626 -117041721 - L2 LINE L2 -7 3306 3208 683 211 8 0 chr4 85286823 85286946 -117041401 + FLAM_A SINE Alu 1 124 -18 21 0 0 0 chr4 85287061 85287082 -117041265 + AT_rich Low_complexity Low_complexity 1 21 0 502 268 47 8 chr4 85288886 85289013 -117039334 + MIR SINE MIR 20 151 -111 24 32 0 0 chr4 85290837 85290868 -117037479 + AT_rich Low_complexity Low_complexity 1 31 0 455 267 106 23 chr4 85291313 85291557 -117036790 - Charlie8 DNA MER1_type -2216 201 1 927 27 0 0 chr4 85291677 85291787 -117036560 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 236 316 189 10 chr4 85291823 85292029 -117036318 + MIR SINE MIR 12 254 -8 1790 184 3 10 chr4 85293972 85294346 -117034001 + AluJb SINE Alu 3 374 0 2061 111 14 0 chr4 85295384 85295710 -117032637 + AluSx SINE Alu 1 330 0 464 0 18 0 chr4 85296419 85296475 -117031872 + (TGGA)n Simple_repeat Simple_repeat 2 58 0 252 290 0 0 chr4 85297837 85297899 -117030448 + MLT1H LTR MaLR 421 482 -67 481 193 186 62 chr4 85297910 85298055 -117030292 - MER96 DNA MER1_type? -3 172 10 1563 195 36 7 chr4 85298699 85299099 -117029248 - AluJo SINE Alu 0 409 1 925 240 50 92 chr4 85299129 85299456 -117028891 + LTR16A1 LTR ERVL 8 316 -141 2481 130 117 5 chr4 85299456 85299841 -117028506 + MSTA LTR MaLR 1 428 0 925 240 50 92 chr4 85299841 85299913 -117028434 + LTR16A1 LTR ERVL 316 390 -67 868 327 146 49 chr4 85300204 85300687 -117027660 - L3 LINE CR1 -191 1386 951 1947 166 0 3 chr4 85300687 85300995 -117027352 + AluSx SINE Alu 1 307 -5 868 327 146 49 chr4 85300995 85301411 -117026936 - L3 LINE CR1 -626 951 400 476 315 59 27 chr4 85301423 85301642 -117026705 + MIR SINE MIR 10 235 -27 1033 287 206 18 chr4 85301671 85302291 -117026056 - L2 LINE L2 -215 3098 2331 1333 269 53 25 chr4 85302291 85302688 -117025659 - MLT1I LTR MaLR 0 409 2 1033 287 206 18 chr4 85302688 85302776 -117025571 - L2 LINE L2 -982 2331 2261 378 280 32 16 chr4 85302780 85302905 -117025442 - MER69A DNA AcHobo -1 176 50 6196 142 9 13 chr4 85302906 85304168 -117024179 + L1PB1 LINE L1 4398 5657 -494 2445 67 3 0 chr4 85304168 85304466 -117023881 + AluY SINE Alu 1 299 -12 6196 142 9 13 chr4 85304466 85304960 -117023387 + L1PB1 LINE L1 5657 6151 0 255 299 15 0 chr4 85304962 85305029 -117023318 - MER69A DNA AcHobo -108 69 2 329 273 191 16 chr4 85305030 85305213 -117023134 - L2 LINE L2 -1048 2266 2052 279 389 29 11 chr4 85305418 85305593 -117022754 + MIR3 SINE MIR 14 191 -17 1754 188 129 17 chr4 85305933 85306353 -117021994 - MLT1C LTR MaLR 0 467 1 1811 181 80 47 chr4 85306358 85306922 -117021425 + MER39 LTR ERV1 6 707 0 260 349 70 50 chr4 85306951 85307335 -117021012 + L2 LINE L2 2459 2850 -464 316 224 40 180 chr4 85307400 85307628 -117020719 - MER91A DNA MER1_type 0 196 1 3826 47 2 2 chr4 85309523 85309971 -117018376 + LTR7 LTR ERV1 1 448 -2 192 333 42 0 chr4 85310858 85310930 -117017417 - MIR3 SINE MIR -46 162 88 2174 117 3 13 chr4 85311665 85311974 -117016373 - AluSx SINE Alu -6 306 1 961 189 141 4 chr4 85313714 85314015 -117014332 - MER58 DNA MER1_type 0 2420 1 1585 247 82 21 chr4 85314116 85314638 -117013709 + MER74B LTR ERVL 53 606 -16 221 204 0 0 chr4 85314669 85314713 -117013634 + MER5A DNA MER1_type 9 52 -137 261 322 46 0 chr4 85314805 85314892 -117013455 + MIR SINE MIR 14 104 -158 261 0 0 0 chr4 85315709 85315738 -117012609 + (A)n Simple_repeat Simple_repeat 1 29 0 1234 180 28 0 chr4 85317087 85317298 -117011049 - MER2 DNA MER2_type -1 344 128 697 120 26 8 chr4 85317289 85317406 -117010941 - MER2 DNA MER2_type -141 204 86 * 572 176 0 0 chr4 85317514 85317599 -117010748 - MER2 DNA MER2_type -259 86 2 232 305 63 11 chr4 85317763 85317858 -117010489 - L2 LINE L2 -41 3272 3173 1266 138 88 19 chr4 85318169 85318429 -117009918 + LTR1 LTR ERV1 1 278 -507 3036 139 41 61 chr4 85318535 85318762 -117009585 + LTR1 LTR ERV1 210 440 -345 2236 57 0 0 chr4 85318762 85319047 -117009300 + AluY SINE Alu 16 300 0 3036 139 41 61 chr4 85319047 85319406 -117008941 + LTR1 LTR ERV1 440 785 0 193 29 59 0 chr4 85319961 85319995 -117008352 + (TA)n Simple_repeat Simple_repeat 1 36 0 1504 172 40 53 chr4 85321670 85321972 -117006375 + AluJb SINE Alu 1 298 -14 1640 167 7 11 chr4 85322795 85323070 -117005277 - AluJo SINE Alu -30 282 9 2813 29 0 0 chr4 85323857 85324169 -117004178 + AluYb8 SINE Alu 1 312 -6 2483 61 0 22 chr4 85324191 85324502 -117003845 - AluY SINE Alu -7 304 1 1837 153 10 16 chr4 85324502 85324809 -117003538 - AluJo SINE Alu -7 305 1 1633 295 78 44 chr4 85325290 85326335 -117002012 - L1M4 LINE L1 -5448 1094 14 6501 208 54 11 chr4 85326695 85328068 -117000279 + L1PBa LINE L1 4 1435 -5428 1922 113 7 42 chr4 85328168 85328452 -116999895 - AluSx SINE Alu -38 274 1 1174 81 7 0 chr4 85328668 85328817 -116999530 - AluSq SINE Alu -118 195 46 638 103 0 0 chr4 85328818 85328905 -116999442 + AluSp/q SINE Alu 215 301 -12 1877 193 100 49 chr4 85379190 85379376 -116948971 + Charlie1 DNA MER1_type 1779 1954 -807 2074 113 21 0 chr4 85379376 85379658 -116948689 + AluSx SINE Alu 8 295 -17 1877 193 100 49 chr4 85379658 85379943 -116948404 + Charlie1 DNA MER1_type 1954 2274 -487 2391 104 0 0 chr4 85379943 85380251 -116948096 + AluSg SINE Alu 1 308 -2 1537 183 3 14 chr4 85380278 85380563 -116947784 + AluJo SINE Alu 1 282 -30 1953 104 4 0 chr4 85380717 85380985 -116947362 - L1P4 LINE L1 -453 5715 5447 330 253 40 30 chr4 85381903 85382002 -116946345 - MIR3 SINE MIR -46 162 63 2296 104 0 0 chr4 85383969 85384267 -116944080 - AluSg SINE Alu -10 300 3 25 0 0 0 chr4 85386157 85386182 -116942165 + AT_rich Low_complexity Low_complexity 1 25 0 441 276 29 35 chr4 85386365 85386520 -116941827 - L1MC4a LINE L1 -1856 5952 5797 353 148 16 0 chr4 85386520 85386581 -116941766 - L1PA16 LINE L1 -14 6152 6091 441 276 29 35 chr4 85386581 85386599 -116941748 - L1MC4a LINE L1 -2011 5797 5780 * 753 216 37 25 chr4 85386592 85386754 -116941593 - L1PB4 LINE L1 -24 6132 5969 1279 173 126 44 chr4 85386769 85386842 -116941505 - Charlie1 DNA MER1_type 0 2761 2695 216 0 0 0 chr4 85386842 85386866 -116941481 + (TCTA)n Simple_repeat Simple_repeat 2 25 0 1279 173 126 44 chr4 85386866 85387180 -116941167 - Charlie1 DNA MER1_type -66 2695 2342 1979 125 45 3 chr4 85387180 85387469 -116940878 - AluSx SINE Alu -11 301 1 2019 151 0 6 chr4 85387742 85388053 -116940294 - AluSx SINE Alu -3 309 1 368 179 0 39 chr4 85389836 85389914 -116938433 + Tigger5 DNA MER2_type 2243 2317 -6 2104 120 7 0 chr4 85391084 85391376 -116936971 - AluSx SINE Alu -18 294 1 354 321 29 43 chr4 85392083 85392223 -116936124 - MIR SINE MIR -110 152 15 458 317 109 6 chr4 85392585 85392768 -116935579 + MIR SINE MIR 18 219 -43 581 232 108 26 chr4 85392885 85393079 -116935268 - MIR SINE MIR -44 218 9 435 288 17 0 chr4 85393519 85393637 -116934710 + L2 LINE L2 3193 3312 -1 276 288 282 6 chr4 85394563 85394726 -116933621 + MIR SINE MIR 2 209 -53 1026 101 3 0 chr4 85394788 85395138 -116933209 + (CA)n Simple_repeat Simple_repeat 1 351 0 1709 174 13 59 chr4 85395140 85395513 -116932834 - MLT1A1 LTR MaLR 0 365 10 553 314 148 7 chr4 85395572 85395855 -116932492 + MLT1I LTR MaLR 85 407 -2 287 192 103 0 chr4 85395861 85395939 -116932408 + MIR SINE MIR 176 261 -1 1490 264 22 22 chr4 85396673 85397090 -116931257 + LTR16B LTR ERVL 34 450 -14 314 125 54 0 chr4 85397129 85397185 -116931162 - MLT2B1 LTR ERVL 0 520 462 207 204 0 0 chr4 85397192 85397236 -116931111 + (TA)n Simple_repeat Simple_repeat 1 44 0 369 93 0 0 chr4 85397265 85397319 -116931028 + (CA)n Simple_repeat Simple_repeat 2 55 0 1304 217 103 54 chr4 85397319 85397748 -116930599 - MLT2B1 LTR ERVL -70 450 1 637 278 71 47 chr4 85397925 85398289 -116930058 - L2 LINE L2 -9 3304 2932 409 325 185 0 chr4 85399025 85399225 -116929122 + MIR SINE MIR 12 248 -14 335 271 102 59 chr4 85399468 85399649 -116928698 - Charlie8 DNA MER1_type -75 266 69 1590 189 40 0 chr4 85399649 85399946 -116928401 + AluJo SINE Alu 3 311 -1 335 271 102 59 chr4 85399946 85400019 -116928328 - Charlie8 DNA MER1_type -272 69 1 24 32 0 0 chr4 85400056 85400087 -116928260 + AT_rich Low_complexity Low_complexity 1 31 0 198 167 0 0 chr4 85402926 85402962 -116925385 + C-rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 85403772 85403793 -116924554 + AT_rich Low_complexity Low_complexity 1 21 0 513 304 30 12 chr4 85403935 85404103 -116924244 + MIR SINE MIR 31 201 -61 1284 227 14 48 chr4 85404590 85404943 -116923404 - MER58B DNA MER1_type 0 341 1 197 327 75 9 chr4 85405028 85405135 -116923212 - MIR SINE MIR -147 115 2 3205 221 29 28 chr4 85405295 85406268 -116922079 - L1ME2 LINE L1 -8 6156 5182 2156 124 3 0 chr4 85406547 85406846 -116921501 - AluSc SINE Alu -9 300 1 332 203 98 90 chr4 85406887 85407020 -116921327 + MER94 DNA DNA 1 134 0 2117 107 10 3 chr4 85408105 85408395 -116919952 + AluSx SINE Alu 1 292 -20 2189 100 4 0 chr4 85410817 85411124 -116917223 - AluSg SINE Alu 0 308 1 1285 147 66 135 chr4 85412248 85412395 -116915952 + AluJb SINE Alu 1 114 -198 1717 121 0 124 chr4 85412395 85412718 -116915629 - AluSx SINE Alu -19 283 1 1285 147 66 135 chr4 85412718 85412903 -116915444 + AluJb SINE Alu 114 310 -2 315 104 0 0 chr4 85413079 85413127 -116915220 + L1P LINE L1 5134 5181 -965 522 247 0 0 chr4 85413259 85413356 -116914991 + MER5A DNA MER1_type 4 100 -89 212 111 22 0 chr4 85413635 85413680 -116914667 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 2176 113 0 7 chr4 85414034 85414326 -116914021 + AluSg1 SINE Alu 1 290 -19 281 333 71 0 chr4 85415428 85415527 -116912820 + MIR3 SINE MIR 102 207 -1 436 293 20 34 chr4 85415662 85415809 -116912538 - MIR SINE MIR -115 147 3 1369 186 68 39 chr4 85416110 85416390 -116911957 - AluJo SINE Alu -24 288 1 2050 116 0 7 chr4 85416511 85416805 -116911542 + AluSg SINE Alu 17 308 -2 283 273 18 100 chr4 85419384 85419494 -116908853 - L2 LINE L2 -55 3217 3117 31 58 0 0 chr4 85420073 85420125 -116908222 + AT_rich Low_complexity Low_complexity 1 52 0 669 266 140 34 chr4 85420701 85420994 -116907353 + MLT1K LTR MaLR 195 518 -70 180 275 0 0 chr4 85421113 85421153 -116907194 + L2 LINE L2 3221 3260 -12 1784 154 113 64 chr4 85421484 85421892 -116906455 - MSTA LTR MaLR 0 428 1 229 257 9 57 chr4 85424877 85424982 -116903365 - MIR SINE MIR -3 259 160 183 42 0 0 chr4 85425572 85425596 -116902751 + (GA)n Simple_repeat Simple_repeat 2 25 0 222 310 88 29 chr4 85426110 85426281 -116902066 - L2 LINE L2 -262 3010 2830 193 182 0 0 chr4 85426417 85426450 -116901897 + L2 LINE L2 3188 3220 -93 2379 92 3 0 chr4 85427220 85427526 -116900821 - AluSp SINE Alu -6 307 1 457 280 49 7 chr4 85427535 85427678 -116900669 + MIR3 SINE MIR 54 202 -6 263 262 48 16 chr4 85427842 85427968 -116900379 + MER104 DNA Tc2 19 148 -32 220 185 19 19 chr4 85428220 85428274 -116900073 + (TTA)n Simple_repeat Simple_repeat 1 54 0 387 292 78 0 chr4 85428277 85428431 -116899916 - MER112 DNA MER1_type -1 259 94 2615 83 6 11 chr4 85428452 85428813 -116899534 - L1PA10 LINE L1 0 6168 5810 189 0 0 0 chr4 85429064 85429085 -116899262 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 814 272 87 30 chr4 85429250 85429664 -116898683 + L1MC5 LINE L1 7260 7641 -320 2569 55 0 10 chr4 85429664 85429973 -116898374 + AluY SINE Alu 1 306 -5 814 272 87 30 chr4 85429973 85430250 -116898097 + L1MC5 LINE L1 7641 7901 -60 289 327 43 6 chr4 85430818 85430980 -116897367 + L1ME3A LINE L1 5988 6155 -15 2519 62 3 0 chr4 85431457 85431765 -116896582 - AluY SINE Alu -2 309 1 932 276 105 51 chr4 85432510 85433110 -116895237 - L1ME4a LINE L1 -3 6118 5465 1897 130 34 10 chr4 85433110 85433402 -116894945 - AluSx SINE Alu -13 299 1 932 276 105 51 chr4 85433402 85433581 -116894766 - L1ME4a LINE L1 -656 5465 5297 262 236 19 94 chr4 85434652 85434758 -116893589 + MER2 DNA MER2_type 1 98 -247 1642 163 75 3 chr4 85435181 85435530 -116892817 + LTR23 LTR ERV1 3 376 -61 1534 173 9 79 chr4 85435653 85435983 -116892364 + AluJb SINE Alu 1 307 -5 268 240 177 10 chr4 85436431 85436527 -116891820 - MIR SINE MIR -66 142 31 3294 109 254 46 chr4 85436528 85437208 -116891139 - LTR12 LTR ERV1 0 826 5 2414 176 21 33 chr4 85437223 85437836 -116890511 - pTR5 LTR ERV1 -1093 1345 740 21 0 0 0 chr4 85437908 85437929 -116890418 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr4 85438845 85438874 -116889473 + (TG)n Simple_repeat Simple_repeat 2 30 0 423 0 0 0 chr4 85438927 85438974 -116889373 + (TG)n Simple_repeat Simple_repeat 2 48 0 310 225 246 7 chr4 85439833 85439971 -116888376 + L1ME4a LINE L1 5946 6116 -5 490 255 35 16 chr4 85440005 85440156 -116888191 - MIR3 SINE MIR -7 201 50 514 298 216 58 chr4 85440999 85441674 -116886673 + L3 LINE CR1 712 1493 -84 246 204 0 0 chr4 85441939 85441983 -116886364 - L2 LINE L2 -4 3309 3266 180 111 0 0 chr4 85442681 85442708 -116885639 + (TATG)n Simple_repeat Simple_repeat 2 28 0 604 300 22 6 chr4 85446148 85446328 -116882019 - MER5A DNA MER1_type 0 189 7 582 286 103 7 chr4 85446330 85446552 -116881795 + MIR SINE MIR 14 256 -6 304 188 0 16 chr4 85446640 85446704 -116881643 + MER94 DNA DNA 6 68 -66 905 198 0 0 chr4 85446705 85446862 -116881485 - FRAM SINE Alu -18 158 2 1961 174 121 0 chr4 85446976 85447356 -116880991 + MSTB LTR MaLR 1 426 0 10723 106 5 4 chr4 85447584 85449255 -116879092 - L1P LINE L1 -1817 4329 2657 477 101 0 0 chr4 85449252 85449321 -116879026 + L1PA7 LINE L1 5192 5260 -886 * 3609 70 0 0 chr4 85449321 85449778 -116878569 + L1PA7 LINE L1 5694 6153 -1 380 363 14 0 chr4 85450207 85450353 -116877994 + (CCCA)n Simple_repeat Simple_repeat 2 149 0 226 336 141 35 chr4 85450754 85451066 -116877281 + L2 LINE L2 2928 3272 0 2279 115 0 3 chr4 85451462 85451766 -116876581 - AluSx SINE Alu -9 303 1 183 204 0 0 chr4 85451936 85451985 -116876362 + GA-rich Low_complexity Low_complexity 3 51 0 288 0 0 0 chr4 85452732 85452764 -116875583 + (TAA)n Simple_repeat Simple_repeat 2 33 0 24918 30 0 0 chr4 85453995 85457766 -116870581 - L1PA3 LINE L1 -3 6152 2381 3920 41 2 0 chr4 85457768 85458280 -116870067 + L1PA3 LINE L1 1866 2378 -3768 1291 206 48 77 chr4 85458567 85458877 -116869470 + AluJo SINE Alu 1 301 -11 548 246 11 11 chr4 85458880 85459059 -116869288 - L1ME3A LINE L1 -222 5948 5770 361 249 59 51 chr4 85459146 85459194 -116869153 + MER112 DNA MER1_type 1 47 -209 2194 123 0 0 chr4 85459194 85459487 -116868860 + AluSq SINE Alu 1 293 -20 361 249 59 51 chr4 85459487 85459691 -116868656 + MER112 DNA MER1_type 47 255 -1 915 159 173 18 chr4 85459750 85459970 -116868377 + AluJb SINE Alu 14 267 -45 26 0 0 0 chr4 85460919 85460945 -116867402 + AT_rich Low_complexity Low_complexity 1 26 0 848 291 42 0 chr4 85461227 85461468 -116866879 + MIR SINE MIR 12 262 0 240 429 27 7 chr4 85462356 85462503 -116865844 + L2 LINE L2 3121 3270 -2 407 262 107 0 chr4 85462715 85462837 -116865510 + MIR SINE MIR 90 224 -38 224 303 188 51 chr4 85462912 85463268 -116865079 + L2 LINE L2 2330 2734 -580 771 279 66 12 chr4 85463343 85463601 -116864746 + LTR33 LTR ERVL 3 274 -247 6738 173 109 32 chr4 85463604 85465156 -116863191 + MER52A LTR ERV1 1 1755 0 558 315 92 0 chr4 85465434 85465694 -116862653 + LTR33 LTR ERVL 235 518 -3 493 366 131 19 chr4 85465706 85466072 -116862275 + L2 LINE L2 2866 3272 0 514 273 177 48 chr4 85466344 85466677 -116861670 + L2 LINE L2 2934 3309 -4 189 107 0 0 chr4 85467956 85467984 -116860363 + (A)n Simple_repeat Simple_repeat 1 28 0 974 159 0 37 chr4 85468809 85468972 -116859375 + FRAM SINE Alu 18 174 -2 333 0 0 0 chr4 85469624 85469661 -116858686 + (TG)n Simple_repeat Simple_repeat 2 38 0 385 309 26 53 chr4 85470465 85470617 -116857730 - L2 LINE L2 0 3272 3125 741 252 77 15 chr4 85470634 85470876 -116857471 - MIR SINE MIR 0 262 2 1980 151 14 22 chr4 85471076 85471440 -116856907 + MER46B DNA MER2_type 1 236 0 663 277 24 0 chr4 85472573 85472739 -116855608 - MIR SINE MIR -48 214 45 348 235 112 0 chr4 85472989 85473124 -116855223 + LTR33A LTR ERVL 68 241 -280 216 0 0 0 chr4 85473126 85473150 -116855197 + (T)n Simple_repeat Simple_repeat 1 24 0 459 268 45 0 chr4 85473159 85473338 -116855009 + LTR33 LTR ERVL 331 517 -4 249 286 125 62 chr4 85473371 85473483 -116854864 - L2 LINE L2 0 3272 3154 1610 158 75 19 chr4 85474636 85474772 -116853575 + MER58B DNA MER1_type 2 129 -2291 2297 146 64 12 chr4 85474772 85475177 -116853170 - MSTB LTR MaLR 0 426 1 1610 158 75 19 chr4 85475177 85475362 -116852985 + MER58B DNA MER1_type 129 341 0 254 209 267 0 chr4 85475605 85475691 -116852656 - MIR SINE MIR 0 262 154 295 323 20 10 chr4 85475857 85475956 -116852391 + MIR SINE MIR 157 256 -6 21 0 0 0 chr4 85476348 85476369 -116851978 + AT_rich Low_complexity Low_complexity 1 21 0 1488 132 0 5 chr4 85476593 85476798 -116851549 + AluSx SINE Alu 1 204 -108 23 33 0 0 chr4 85476823 85476853 -116851494 + AT_rich Low_complexity Low_complexity 1 30 0 246 308 15 0 chr4 85477019 85477084 -116851263 + L2 LINE L2 3207 3272 0 226 139 0 0 chr4 85477962 85477998 -116850349 + U2 snRNA snRNA 1 36 -152 24 32 0 0 chr4 85478550 85478581 -116849766 + AT_rich Low_complexity Low_complexity 1 31 0 344 277 45 0 chr4 85478858 85478970 -116849377 - MER5B DNA MER1_type -61 117 1 2260 110 3 13 chr4 85478995 85479303 -116849044 - AluSp SINE Alu -8 305 1 388 222 44 0 chr4 85480023 85480113 -116848234 - L2 LINE L2 0 3272 3179 1812 167 30 3 chr4 85480155 85480484 -116847863 + MER2 DNA MER2_type 1 338 -7 219 235 167 37 chr4 85480505 85480667 -116847680 - L2 LINE L2 -167 3146 2964 1712 195 0 3 chr4 85482048 85482340 -116846007 + AluJb SINE Alu 1 291 -21 40 0 0 0 chr4 85483877 85483917 -116844430 + AT_rich Low_complexity Low_complexity 1 40 0 2137 94 11 3 chr4 85483920 85484207 -116844140 - AluSx SINE Alu -20 292 4 208 234 250 0 chr4 85488685 85488749 -116839598 - MIR3 SINE MIR -48 160 81 210 286 36 36 chr4 85488930 85489014 -116839333 + MIR SINE MIR 9 92 -170 267 339 26 58 chr4 85489763 85489952 -116838395 - MIR SINE MIR -78 184 2 279 271 57 36 chr4 85490218 85490358 -116837989 + MER104 DNA Tc2 38 180 0 2314 113 3 0 chr4 85491696 85492005 -116836342 + AluSp SINE Alu 1 310 -3 2131 100 0 0 chr4 85493372 85493719 -116834628 + AluY SINE Alu 2 348 0 222 37 0 0 chr4 85493831 85493858 -116834489 + (A)n Simple_repeat Simple_repeat 1 27 0 1022 200 0 9 chr4 85494778 85494988 -116833359 + MER3 DNA MER1_type 2 209 0 225 241 212 66 chr4 85495725 85495862 -116832485 - MIR3 SINE MIR -18 190 34 264 243 0 0 chr4 85496501 85496575 -116831772 + (TA)n Simple_repeat Simple_repeat 1 74 0 320 250 133 83 chr4 85498805 85499045 -116829302 + L1M2 LINE L1 731 982 -5867 380 299 102 14 chr4 85499250 85499397 -116828950 - L2 LINE L2 -3 3269 3110 321 333 27 0 chr4 85499681 85499792 -116828555 + MIR SINE MIR 73 186 -76 224 259 0 17 chr4 85500170 85500228 -116828119 + MIR SINE MIR 53 109 -153 30202 106 12 54 chr4 85500276 85502381 -116825966 + L1PA7 LINE L1 5 2197 -4272 2257 101 0 14 chr4 85502381 85502678 -116825669 - AluSx SINE Alu -19 293 1 30202 106 12 54 chr4 85502678 85506993 -116821354 + L1PA7 LINE L1 2197 6465 -4 469 305 26 32 chr4 85507249 85507470 -116820877 + MIR SINE MIR 4 223 -39 * 959 187 61 75 chr4 85507464 85507758 -116820589 + L2 LINE L2 3024 3313 0 195 238 48 0 chr4 85507991 85508033 -116820314 - L2 LINE L2 -19 3253 3210 374 229 57 0 chr4 85508446 85508551 -116819796 - MIR SINE MIR -75 187 77 22 0 0 0 chr4 85509693 85509715 -116818632 + AT_rich Low_complexity Low_complexity 1 22 0 181 428 44 13 chr4 85510048 85510207 -116818140 + L3b LINE CR1 1389 1552 -31 287 262 35 145 chr4 85510933 85511105 -116817242 - MIR3 SINE MIR 0 208 56 24 32 0 0 chr4 85511941 85511972 -116816375 + AT_rich Low_complexity Low_complexity 1 31 0 225 188 21 0 chr4 85513308 85513356 -116814991 + CT-rich Low_complexity Low_complexity 3 51 0 219 288 101 11 chr4 85513642 85513754 -116814593 + MIR3 SINE MIR 39 158 -50 5340 45 0 0 chr4 85514078 85514750 -116813597 - L1PA7 LINE L1 -72 6082 5411 3315 92 7 3 chr4 85514747 85515337 -116813010 + L1M4 LINE L1 4908 5500 -684 * 204 300 117 0 chr4 85515346 85515406 -116812941 + L2 LINE L2 3247 3313 0 1713 192 0 7 chr4 85515475 85515849 -116812498 - AluJb SINE Alu 0 372 1 217 348 42 17 chr4 85516186 85516304 -116812043 + L2 LINE L2 2356 2476 -838 2075 113 6 67 chr4 85516613 85516941 -116811406 - AluSq SINE Alu -5 308 1 654 265 28 79 chr4 85517447 85517700 -116810647 - MIR SINE MIR -3 259 20 310 355 96 12 chr4 85517906 85518072 -116810275 + MIR SINE MIR 78 257 -5 402 217 96 102 chr4 85518202 85518273 -116810074 - L1MC4 LINE L1 -151 7891 7821 2292 87 0 0 chr4 85518273 85518560 -116809787 + AluSg SINE Alu 1 287 -23 402 217 96 102 chr4 85518560 85518936 -116809411 - L1MC4 LINE L1 -221 7821 7345 519 256 98 18 chr4 85519101 85519265 -116809082 - MER5B DNA MER1_type -1 177 1 280 361 16 16 chr4 85519268 85519390 -116808957 + L2 LINE L2 3192 3313 0 263 224 84 42 chr4 85520057 85520200 -116808147 + L1MC4a LINE L1 5292 5440 -2368 488 300 89 64 chr4 85520261 85520588 -116807759 + L1MC4a LINE L1 5597 5931 -1877 1154 178 59 20 chr4 85520591 85520793 -116807554 + AluJo SINE Alu 1 210 -102 225 65 0 0 chr4 85520825 85520856 -116807491 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2339 41 0 34 chr4 85521565 85521901 -116806446 - AluY SINE Alu 0 327 2 242 317 28 62 chr4 85522125 85522270 -116806077 + MIR SINE MIR 81 220 -42 284 312 75 0 chr4 85522362 85522455 -116805892 - MIR3 SINE MIR -46 162 63 546 184 16 0 chr4 85623022 85623147 -116705200 - L1P LINE L1 -1098 5048 4922 * 7086 158 24 11 chr4 85623134 85624566 -116703781 - L1 LINE L1 -816 6749 5300 214 197 76 30 chr4 85624757 85624823 -116703524 + MIR SINE MIR 97 165 -97 205 146 0 73 chr4 85625454 85625509 -116702838 + (TAAAA)n Simple_repeat Simple_repeat 2 52 0 1162 205 70 80 chr4 85627971 85628371 -116699976 - MSTD LTR MaLR 0 396 1 1677 175 96 3 chr4 85629103 85629435 -116698912 + MLT1A1 LTR MaLR 1 363 -2 1092 230 35 9 chr4 85630197 85630427 -116697920 - AluJb SINE Alu -76 236 1 7428 193 21 9 chr4 85630427 85632587 -116695760 - L1 LINE L1 -2249 5316 3133 448 218 50 0 chr4 85632575 85632676 -116695671 - L1 LINE L1 -7443 122 17 * 34 0 0 0 chr4 85632679 85632713 -116695634 + AT_rich Low_complexity Low_complexity 1 34 0 327 287 0 11 chr4 85633509 85633603 -116694744 - MIR SINE MIR -95 113 21 465 300 65 65 chr4 85635756 85636329 -116692018 + L1MEd LINE L1 246 818 -5301 432 280 75 30 chr4 85636459 85636490 -116691857 - L2 LINE L2 -133 3180 3152 1837 159 70 19 chr4 85636490 85636861 -116691486 - MLT1B LTR MaLR 0 390 1 432 280 75 30 chr4 85636861 85637029 -116691318 - L2 LINE L2 -161 3152 2972 930 274 55 24 chr4 85637051 85637471 -116690876 + L1ME3 LINE L1 5435 5867 -295 225 65 0 0 chr4 85637551 85637582 -116690765 + (CA)n Simple_repeat Simple_repeat 1 31 0 2336 92 0 0 chr4 85638209 85638501 -116689846 - AluSx SINE Alu -8 304 13 198 312 139 46 chr4 85638736 85638909 -116689438 - MIR SINE MIR -56 206 18 246 170 0 0 chr4 85639846 85639893 -116688454 - MER58 DNA MER1_type -4 2416 2370 2290 99 3 0 chr4 85639894 85640188 -116688159 - AluSp SINE Alu -18 295 1 204 67 0 0 chr4 85640248 85640278 -116688069 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 491 186 196 0 chr4 85640288 85640390 -116687957 - FLAM_A SINE Alu -11 122 1 631 271 0 0 chr4 85640393 85640533 -116687814 - MER58A DNA MER1_type 0 140 1 537 324 41 18 chr4 85640593 85640812 -116687535 - MIR SINE MIR -21 241 18 1247 296 89 43 chr4 85640912 85641924 -116686423 - L2 LINE L2 0 3272 2212 380 279 6 70 chr4 85641924 85642060 -116686287 - MLT1L LTR MaLR 0 615 491 2343 96 3 0 chr4 85642060 85642361 -116685986 - AluSq SINE Alu -11 302 1 380 279 6 70 chr4 85642361 85642396 -116685951 - MLT1L LTR MaLR -124 491 455 185 211 19 0 chr4 85642500 85642552 -116685795 + GA-rich Low_complexity Low_complexity 2 54 0 235 176 0 39 chr4 85642729 85642780 -116685567 - MLT1K LTR MaLR -342 246 198 254 226 129 57 chr4 85642829 85642953 -116685394 - L2 LINE L2 -1063 2251 2119 267 372 54 16 chr4 85643294 85643423 -116684924 + L2 LINE L2 3122 3255 -17 999 151 78 19 chr4 85643612 85643817 -116684530 + MER20 DNA MER1_type 1 217 -2 1506 175 68 15 chr4 85643974 85644300 -116684047 - MER2 DNA MER2_type 0 344 2 279 359 33 19 chr4 85646730 85646942 -116681405 - L2 LINE L2 -1293 2021 1807 324 255 78 39 chr4 85647350 85647503 -116680844 + MER103 DNA DNA 2 160 -6 25 0 0 0 chr4 85647568 85647593 -116680754 + AT_rich Low_complexity Low_complexity 1 25 0 580 241 29 82 chr4 85647878 85648085 -116680262 + MIR SINE MIR 9 204 -58 311 333 114 0 chr4 85648176 85648308 -116680039 - L2 LINE L2 0 3272 3126 450 279 89 34 chr4 85648761 85648940 -116679407 + MER5A DNA MER1_type 1 189 0 * 608 307 68 92 chr4 85648940 85649495 -116678852 - L2 LINE L2 -609 2705 2164 592 326 144 11 chr4 85649580 85649933 -116678414 + L2 LINE L2 2869 3268 -4 404 345 144 22 chr4 85649948 85650592 -116677755 - L2 LINE L2 -1212 2102 1380 264 362 14 7 chr4 85651179 85651317 -116677030 - MIR SINE MIR -7 255 117 2441 94 96 10 chr4 85651337 85651485 -116676862 + L1MA3 LINE L1 5855 5989 -316 213 94 0 0 chr4 85651485 85651517 -116676830 + (TGGGGG)n Simple_repeat Simple_repeat 5 36 0 2441 94 96 10 chr4 85651517 85651783 -116676564 + L1MA3 LINE L1 5989 6305 0 493 263 26 20 chr4 85651996 85652148 -116676199 - MER117 DNA MER1_type -4 193 41 1383 265 46 43 chr4 85652207 85652668 -116675679 - LTR16B LTR ERVL -2 462 1 437 289 106 53 chr4 85653404 85653612 -116674735 - MIR SINE MIR -33 229 11 209 236 181 14 chr4 85653922 85653994 -116674353 + L2 LINE L2 3158 3241 -31 1883 139 171 8 chr4 85654831 85655199 -116673148 + MSTA LTR MaLR 1 428 0 603 170 90 0 chr4 85655395 85655531 -116672816 - MIR SINE MIR -11 251 100 804 209 6 0 chr4 85657280 85657452 -116670895 - MER5B DNA MER1_type -2 176 4 494 367 26 9 chr4 85658084 85658310 -116670037 - MIR SINE MIR -14 248 19 29 70 0 0 chr4 85658393 85658450 -116669897 + AT_rich Low_complexity Low_complexity 1 57 0 680 202 0 0 chr4 85658599 85658718 -116669629 + FLAM_C SINE Alu 1 119 -24 21 36 0 0 chr4 85658804 85658832 -116669515 + AT_rich Low_complexity Low_complexity 1 28 0 525 193 60 18 chr4 85659910 85660069 -116668278 + MLT1I LTR MaLR 80 218 -191 1553 129 29 52 chr4 85660405 85660715 -116667632 - L1MB3 LINE L1 -2 6181 5879 186 103 0 0 chr4 85661342 85661371 -116666976 + (TTTTC)n Simple_repeat Simple_repeat 1 29 0 396 306 48 48 chr4 85661842 85661966 -116666381 - L2 LINE L2 -15 3257 3134 301 317 59 18 chr4 85662175 85662410 -116665937 - L2 LINE L2 -258 3014 2773 1164 227 36 0 chr4 85662455 85662706 -116665641 + MIR SINE MIR 2 261 -1 209 200 44 0 chr4 85663074 85663119 -116665228 - MIR3 SINE MIR -9 199 153 236 340 10 29 chr4 85663411 85663514 -116664833 - MIR SINE MIR -1 261 161 841 258 150 18 chr4 85663536 85663989 -116664358 + LTR33A LTR ERVL 9 521 -2 2154 146 112 0 chr4 85664456 85664839 -116663508 + MSTB LTR MaLR 1 426 0 2380 92 0 0 chr4 85664881 85665175 -116663172 + AluSc SINE Alu 1 294 -15 23 0 0 0 chr4 85665695 85665718 -116662629 + AT_rich Low_complexity Low_complexity 1 23 0 360 0 0 0 chr4 85665727 85665767 -116662580 + (TA)n Simple_repeat Simple_repeat 1 40 0 199 354 13 0 chr4 85666185 85666264 -116662083 + L2 LINE L2 2860 2939 -333 279 342 20 27 chr4 85669534 85669683 -116658664 - MER117 DNA MER1_type -1 196 49 186 261 43 0 chr4 85670102 85670148 -116658199 - MIR SINE MIR -14 248 201 2067 151 0 3 chr4 85670920 85671224 -116657123 + AluJb SINE Alu 1 303 -9 412 250 133 23 chr4 85671327 85671499 -116656848 + MIR SINE MIR 66 262 0 23 33 0 0 chr4 85671986 85672016 -116656331 + AT_rich Low_complexity Low_complexity 1 30 0 204 40 0 0 chr4 85672528 85672553 -116655794 + (TG)n Simple_repeat Simple_repeat 1 25 0 555 342 111 17 chr4 85673429 85673780 -116654567 - L3 LINE CR1 -3 1574 1191 312 181 12 60 chr4 85676726 85676809 -116651538 - L2 LINE L2 -81 3232 3154 28 0 0 0 chr4 85676978 85677006 -116651341 + AT_rich Low_complexity Low_complexity 1 28 0 203 130 14 58 chr4 85677040 85677109 -116651238 + (TA)n Simple_repeat Simple_repeat 2 67 0 273 169 26 65 chr4 85677116 85677193 -116651154 + L2 LINE L2 3159 3232 -81 773 172 0 18 chr4 85677255 85677483 -116650864 + (TA)n Simple_repeat Simple_repeat 1 223 0 773 156 0 35 chr4 85677505 85677762 -116650585 + (TA)n Simple_repeat Simple_repeat 1 248 0 4507 164 85 33 chr4 85677765 85679291 -116649056 - L1MA9 LINE L1 -39 6273 4652 422 288 33 49 chr4 85679661 85679845 -116648502 + MIR SINE MIR 81 261 -1 1218 228 84 9 chr4 85679897 85680231 -116648116 + MLT1A2 LTR MaLR 1 359 -15 302 260 13 13 chr4 85681225 85681302 -116647045 - MIR SINE MIR -113 95 19 584 277 55 43 chr4 85681344 85681579 -116646768 - MIR SINE MIR 0 262 25 4348 93 57 9 chr4 85681691 85682376 -116645971 + L1MA4A LINE L1 5577 6294 -9 502 247 112 29 chr4 85682708 85682878 -116645469 + MIR SINE MIR 73 256 -6 452 297 35 78 chr4 85683015 85683279 -116645068 - MIR SINE MIR -10 252 2 201 296 56 0 chr4 85684335 85684406 -116643941 - L2 LINE L2 -219 3053 2979 783 208 174 19 chr4 85684615 85684822 -116643525 - MIR SINE MIR -21 241 3 195 42 0 0 chr4 85685070 85685094 -116643253 + (GA)n Simple_repeat Simple_repeat 2 25 0 2401 50 0 0 chr4 85686597 85686878 -116641469 - AluY SINE Alu -30 281 1 300 27 0 0 chr4 85687029 85687066 -116641281 + (CA)n Simple_repeat Simple_repeat 1 37 0 368 222 61 0 chr4 85687190 85687289 -116641058 - LTR33 LTR ERVL -49 472 368 314 229 21 57 chr4 85687414 85687554 -116640793 - LTR33 LTR ERVL -366 155 21 1527 189 65 30 chr4 85687637 85688096 -116640251 - Charlie4a DNA MER1_type -31 477 3 195 42 0 0 chr4 85688400 85688424 -116639923 + (CA)n Simple_repeat Simple_repeat 2 25 0 2296 233 80 19 chr4 85688424 85689102 -116639245 - L1ME3A LINE L1 -24 6146 5428 4853 157 59 22 chr4 85689122 85689606 -116638741 - L1MA7 LINE L1 -2 6289 5824 1649 79 14 113 chr4 85689606 85689707 -116638640 + AluSq SINE Alu 36 145 -168 1987 126 10 13 chr4 85689707 85690016 -116638331 + AluSx SINE Alu 1 308 -4 1649 79 14 113 chr4 85690016 85690206 -116638141 + AluSq SINE Alu 145 298 -15 4853 157 59 22 chr4 85690206 85690872 -116637475 - L1MA7 LINE L1 -467 5824 5105 381 243 0 37 chr4 85690862 85690998 -116637349 - L1ME3A LINE L1 -726 5444 5314 * 264 274 103 26 chr4 85691132 85691249 -116637098 - MIR SINE MIR -34 228 103 463 293 8 23 chr4 85691744 85691877 -116636470 - MIR3 SINE MIR -6 202 72 618 130 0 0 chr4 85691949 85692049 -116636298 - L1MA10 LINE L1 -1 6333 6234 271 317 37 0 chr4 85693181 85693263 -116635084 + MIR SINE MIR 66 150 -58 227 337 20 0 chr4 85693285 85693386 -116634961 - LTR67 LTR ERVL -25 532 430 31 0 0 0 chr4 85693766 85693797 -116634550 + AT_rich Low_complexity Low_complexity 1 31 0 322 274 54 24 chr4 85694693 85694861 -116633486 + MLT1J2 LTR MaLR 65 237 -213 326 235 0 12 chr4 85694938 85695019 -116633328 + MLT1J1 LTR MaLR 358 437 -9 844 283 42 4 chr4 85695253 85695493 -116632854 + MIR SINE MIR 3 251 -11 1048 216 41 9 chr4 85695700 85695918 -116632429 - MIR SINE MIR -14 248 24 1182 211 30 97 chr4 85696208 85696830 -116631517 + MLT2D LTR ERVL 1 552 -2 433 207 0 0 chr4 85696830 85696917 -116631430 - MER5A DNA MER1_type -96 93 7 216 286 179 12 chr4 85696910 85696994 -116631353 + L2 LINE L2 3166 3263 -9 * 2293 106 0 0 chr4 85697010 85697311 -116631036 - AluSc SINE Alu -8 301 1 261 98 0 0 chr4 85697316 85697357 -116630990 + (T)n Simple_repeat Simple_repeat 1 41 0 32 43 0 0 chr4 85698202 85698248 -116630099 + AT_rich Low_complexity Low_complexity 1 46 0 246 318 0 0 chr4 85698314 85698402 -116629945 + (TATATG)n Simple_repeat Simple_repeat 3 90 0 315 262 24 0 chr4 85699593 85699677 -116628670 - MIR SINE MIR -81 181 96 1068 267 160 2 chr4 85699677 85700108 -116628239 - LTR33 LTR ERVL -3 518 20 674 123 9 26 chr4 85701261 85701375 -116626972 - FRAM SINE Alu -3 173 62 198 276 66 53 chr4 85701447 85701523 -116626824 - MIR SINE MIR -122 86 10 625 229 29 6 chr4 85701555 85701725 -116626622 - MER110A LTR ERV1 0 468 295 771 102 0 0 chr4 85701725 85701833 -116626514 + AluSq/x SINE Alu 1 108 -204 625 191 196 10 chr4 85701833 85701886 -116626461 - MER110A LTR ERV1 -185 283 241 3001 133 35 0 chr4 85701886 85702368 -116625979 - L1PA16 LINE L1 0 6166 5668 625 191 196 10 chr4 85702368 85702523 -116625824 - MER110A LTR ERV1 -227 241 36 306 0 0 0 chr4 85702526 85702560 -116625787 + (TG)n Simple_repeat Simple_repeat 1 34 0 333 68 0 0 chr4 85702560 85702604 -116625743 + (GA)n Simple_repeat Simple_repeat 2 45 0 1784 240 35 10 chr4 85702760 85703248 -116625099 - MER110A-int LTR ERV1 -4 4643 4144 192 77 0 0 chr4 85703329 85703355 -116624992 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 14542 187 21 38 chr4 85703361 85704273 -116624074 - L1MA5 LINE L1 -15 6467 5541 414 0 0 0 chr4 85704273 85704319 -116624028 + (TG)n Simple_repeat Simple_repeat 2 47 0 1744 190 0 4 chr4 85704320 85704599 -116623748 - AluJb SINE Alu -34 278 1 14542 187 21 38 chr4 85704599 85709228 -116619119 - L1MA5 LINE L1 -940 5542 1005 41886 38 1 6 chr4 85709228 85715407 -116612940 + L1PA3 LINE L1 3 6152 -3 3872 173 24 4 chr4 85715435 85716181 -116612166 - L1MA5 LINE L1 -4311 1017 257 206 176 27 0 chr4 85716419 85716493 -116611854 + A-rich Low_complexity Low_complexity 4 79 0 213 200 0 0 chr4 85717256 85717291 -116611056 + (CCA)n Simple_repeat Simple_repeat 3 37 0 479 295 14 86 chr4 85717322 85717452 -116610895 - MIR SINE MIR -32 230 119 2391 98 0 0 chr4 85717452 85717759 -116610588 + AluSg1 SINE Alu 1 307 -2 479 295 14 86 chr4 85717759 85717838 -116610509 - MIR SINE MIR -143 119 36 309 395 53 0 chr4 85719745 85719859 -116608488 - L2 LINE L2 -35 3237 3118 281 313 119 26 chr4 85720401 85720711 -116607636 - L2 LINE L2 -1123 2191 1853 499 224 26 0 chr4 85721394 85721510 -116606837 - MIR3 SINE MIR -34 174 56 306 303 86 81 chr4 85721586 85722125 -116606222 + L2 LINE L2 2657 3268 -4 223 330 0 37 chr4 85722265 85722374 -116605973 + L2 LINE L2 2881 2985 -287 21 0 0 0 chr4 85723299 85723320 -116605027 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 85723334 85723355 -116604992 + AT_rich Low_complexity Low_complexity 1 21 0 347 339 25 8 chr4 85724203 85724324 -116604023 + L2 LINE L2 3150 3272 0 370 238 136 27 chr4 85725022 85725169 -116603178 + LTR33 LTR ERVL 85 247 -274 422 251 104 6 chr4 85725206 85725369 -116602978 + LTR33 LTR ERVL 337 515 -6 254 214 18 0 chr4 85725383 85725439 -116602908 - MLT1K LTR MaLR -527 61 5 305 320 19 45 chr4 85728668 85728824 -116599523 + MER5A DNA MER1_type 38 189 0 2294 120 28 31 chr4 85728954 85729345 -116599002 - MLT1B LTR MaLR 0 390 1 6035 179 49 16 chr4 85729596 85730952 -116597395 + Charlie1a DNA MER1_type 55 1455 0 278 256 0 26 chr4 85731378 85731456 -116596891 + T-rich Low_complexity Low_complexity 4 79 0 459 0 0 0 chr4 85731899 85731950 -116596397 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 294 235 49 25 chr4 85732311 85732392 -116595955 + MIR SINE MIR 15 97 -165 274 297 54 18 chr4 85732990 85733101 -116595246 - MIR SINE MIR 0 262 148 1008 210 261 28 chr4 85733204 85733747 -116594600 - LTR50 LTR ERVL -125 670 1 678 229 0 21 chr4 85733747 85733891 -116594456 - MIR SINE MIR -109 153 13 316 312 43 35 chr4 85733915 85734056 -116594291 + MIR SINE MIR 121 262 0 297 218 60 113 chr4 85734391 85734524 -116593823 - L2 LINE L2 0 3313 3188 5625 141 36 32 chr4 85735605 85735826 -116592521 - L1MC1 LINE L1 0 6333 6114 2242 168 54 5 chr4 85735826 85736232 -116592115 - MSTA LTR MaLR 0 428 3 5625 141 36 32 chr4 85736232 85737238 -116591109 - L1MC1 LINE L1 -219 6114 5101 3086 155 27 35 chr4 85738102 85738404 -116589943 - L1MC1 LINE L1 -81 6252 5949 2076 167 0 0 chr4 85738404 85738716 -116589631 - AluSx SINE Alu 0 312 1 3086 155 27 35 chr4 85738716 85739051 -116589296 - L1MC1 LINE L1 -384 5949 5620 2430 81 0 16 chr4 85739268 85739576 -116588771 - AluSc SINE Alu -6 303 1 23 54 0 0 chr4 85740055 85740092 -116588255 + AT_rich Low_complexity Low_complexity 1 37 0 364 39 0 0 chr4 85740392 85740444 -116587903 - L1MA7 LINE L1 -1 6290 6239 1849 176 7 7 chr4 85741373 85741668 -116586679 + AluJo SINE Alu 1 295 -17 510 284 51 17 chr4 85741675 85741911 -116586436 + MER102b DNA MER1_type 32 275 -66 335 209 99 0 chr4 85742608 85742699 -116585648 - MER96B DNA MER1_type? 0 417 318 542 227 83 8 chr4 85742721 85742853 -116585494 - MIR SINE MIR -116 146 5 305 206 175 62 chr4 85743997 85744157 -116584190 - MER20B DNA MER1_type 0 783 606 448 219 0 10 chr4 85744351 85744447 -116583900 + MLT1D LTR MaLR 1 95 -410 * 639 214 31 31 chr4 85744445 85744467 -116583880 - MER20B DNA MER1_type -368 415 394 2233 181 117 2 chr4 85744467 85744920 -116583427 + MLT1D LTR MaLR 1 505 0 639 214 31 31 chr4 85744920 85745089 -116583258 - MER20B DNA MER1_type -388 395 224 285 345 21 28 chr4 85745340 85745485 -116582862 + L2 LINE L2 2943 3086 -186 425 214 95 16 chr4 85745538 85745664 -116582683 - MIR SINE MIR -26 236 101 527 340 130 3 chr4 85746077 85746377 -116581970 - L2 LINE L2 -17 3296 2959 608 194 58 31 chr4 85748121 85748312 -116580035 + LTR33A LTR ERVL 328 523 0 1086 205 162 27 chr4 85748903 85749274 -116579073 - LTR16A1 LTR ERVL -33 424 4 248 283 0 116 chr4 85749296 85749402 -116578945 + MIR SINE MIR 59 153 -55 1737 113 13 33 chr4 85749441 85749743 -116578604 + L1PA16 LINE L1 5852 6147 -19 373 368 28 24 chr4 85749817 85750070 -116578277 - L2 LINE L2 -194 3078 2825 255 206 0 65 chr4 85751878 85751970 -116576377 - HAL1 LINE L1 -6 2501 2416 2148 233 63 108 chr4 85752043 85753696 -116574651 - HAL1 LINE L1 -289 2218 641 1673 200 3 0 chr4 85754113 85754398 -116573949 + AluJo SINE Alu 1 286 -26 578 286 120 28 chr4 85755026 85755243 -116573104 - MIR SINE MIR -16 246 10 400 214 37 76 chr4 85756072 85756226 -116572121 - MIR SINE MIR -58 150 19 7122 49 0 3 chr4 85756228 85757297 -116571050 - L1PA6 LINE L1 -2 6152 5078 208 340 93 31 chr4 85757462 85757559 -116570788 - L2 LINE L2 -36 3236 3134 279 399 37 12 chr4 85758318 85758481 -116569866 + L2 LINE L2 3106 3272 0 566 283 122 13 chr4 85758512 85758749 -116569598 - MLT1J2 LTR MaLR 0 450 188 463 297 59 36 chr4 85758875 85759094 -116569253 + MIR SINE MIR 8 231 -31 5747 123 28 14 chr4 85759406 85761464 -116566883 - L1PA16 LINE L1 -13 6153 4078 222 118 0 0 chr4 85761677 85761711 -116566636 + (GGGAA)n Simple_repeat Simple_repeat 1 34 0 252 265 31 80 chr4 85761727 85761889 -116566458 + LTR16A LTR ERVL 11 164 -286 575 297 57 0 chr4 85761928 85762120 -116566227 + LTR16A LTR ERVL 242 444 -6 207 204 0 0 chr4 85762128 85762177 -116566170 + GA-rich Low_complexity Low_complexity 5 53 0 33 0 0 0 chr4 85762387 85762420 -116565927 + AT_rich Low_complexity Low_complexity 1 33 0 1740 167 0 32 chr4 85765363 85765674 -116562673 - AluJb SINE Alu -11 301 1 383 241 22 51 chr4 85766484 85766621 -116561726 + MER102b DNA MER1_type 206 338 -3 776 290 121 23 chr4 85767212 85767684 -116560663 - L2 LINE L2 0 3313 2748 189 0 0 0 chr4 85767693 85767714 -116560633 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1054 298 97 19 chr4 85768587 85769010 -116559337 + L2 LINE L2 2836 3291 -22 2371 105 0 0 chr4 85769031 85769337 -116559010 + AluSx SINE Alu 1 306 -6 456 200 248 21 chr4 85769581 85769726 -116558621 + MER5A DNA MER1_type 6 183 -6 572 296 91 27 chr4 85770198 85770418 -116557929 - MIR SINE MIR -18 244 11 448 289 39 0 chr4 85770834 85770962 -116557385 - MIR SINE MIR -6 256 124 763 228 42 0 chr4 85772958 85773125 -116555222 + MER45A DNA AcHobo 1 174 -4 769 273 49 5 chr4 85773290 85773495 -116554852 + MIR SINE MIR 36 249 -13 407 219 30 146 chr4 85773549 85773782 -116554565 - L1MC4 LINE L1 -5 8037 7832 2203 126 3 0 chr4 85773813 85774106 -116554241 - AluSp SINE Alu -18 295 2 240 189 19 0 chr4 85774137 85774190 -116554157 - L1ME2 LINE L1 -26 6138 6085 1138 210 27 20 chr4 85774226 85774521 -116553826 - MLT1A1 LTR MaLR -6 359 63 1287 191 12 133 chr4 85774554 85774847 -116553500 - MER101 LTR ERV1 -35 439 227 7675 169 113 48 chr4 85774847 85774922 -116553425 - MER52A LTR ERV1 0 1755 1686 2120 158 0 0 chr4 85774922 85775233 -116553114 - AluSx SINE Alu -1 311 1 7675 169 113 48 chr4 85775233 85776805 -116551542 - MER52A LTR ERV1 -69 1686 1 1287 191 12 133 chr4 85776805 85776999 -116551348 - MER101 LTR ERV1 -247 227 11 353 182 0 0 chr4 85776999 85777065 -116551282 - MLT1A1 LTR MaLR -299 66 1 1210 224 40 32 chr4 85777067 85777447 -116550900 - L1ME2 LINE L1 -113 6051 5669 480 214 76 8 chr4 85777629 85777760 -116550587 + MER63A DNA MER1_type 71 210 0 768 244 77 8 chr4 85777761 85778007 -116550340 - L1ME2 LINE L1 -602 5562 5300 * 1293 239 61 14 chr4 85778004 85778430 -116549917 - L1ME2 LINE L1 -1050 5096 4651 552 284 34 6 chr4 85779446 85779622 -116548725 - L3 LINE CR1 -109 1468 1288 536 167 0 0 chr4 85779761 85779845 -116548502 - AluJ/FLAM SINE Alu -228 84 1 1493 155 51 75 chr4 85779932 85780306 -116548041 + MLT1A1 LTR MaLR 1 365 0 356 369 111 45 chr4 85781326 85781730 -116546617 - L2 LINE L2 0 3272 2842 295 297 133 48 chr4 85781978 85782143 -116546204 + MIR3 SINE MIR 17 195 -13 10153 146 17 14 chr4 85783073 85786144 -116542203 - L1MA3 LINE L1 0 7724 4642 3407 157 5 19 chr4 85786287 85786879 -116541468 - L1MA3 LINE L1 -6315 1250 667 629 246 170 9 chr4 85787338 85787562 -116540785 + MIR SINE MIR 2 261 -1 231 236 0 0 chr4 85787924 85787979 -116540368 + HsTC2 DNA Tc2 1843 1897 -1 201 196 0 43 chr4 85788128 85788174 -116540173 + CT-rich Low_complexity Low_complexity 3 46 0 3560 108 12 4 chr4 85788472 85788979 -116539368 + MER9 LTR ERVK 1 511 0 264 307 80 12 chr4 85789448 85789611 -116538736 - L2 LINE L2 -925 2389 2216 1746 163 17 7 chr4 85789843 85790132 -116538215 + AluJo SINE Alu 21 312 0 2000 88 68 120 chr4 85791221 85791389 -116536958 + THE1B LTR MaLR 1 176 -188 2350 104 3 0 chr4 85791389 85791687 -116536660 + AluSc SINE Alu 1 299 -10 2000 88 68 120 chr4 85791687 85791902 -116536445 + THE1B LTR MaLR 176 364 0 11819 86 10 2 chr4 85791903 85793469 -116534878 + THE1B-int LTR MaLR 2 1580 0 1959 152 72 26 chr4 85793469 85793817 -116534530 + THE1B LTR MaLR 1 364 0 2361 102 3 0 chr4 85795126 85795431 -116532916 + AluSg SINE Alu 1 306 -4 780 27 54 0 chr4 85795508 85795620 -116532727 + (TTTC)n Simple_repeat Simple_repeat 2 119 0 1907 153 0 0 chr4 85795620 85795889 -116532458 - AluSq SINE Alu -32 281 13 1177 280 49 46 chr4 85796664 85797253 -116531094 - Tigger8 DNA MER2_type -9 657 67 21 0 0 0 chr4 85797703 85797724 -116530623 + AT_rich Low_complexity Low_complexity 1 21 0 1726 153 20 168 chr4 85797734 85798270 -116530077 - LTR32 LTR ERVL 0 471 15 271 292 43 56 chr4 85798643 85798804 -116529543 + L2 LINE L2 2869 3027 -245 31 68 0 0 chr4 85799094 85799153 -116529194 + AT_rich Low_complexity Low_complexity 1 59 0 841 253 153 27 chr4 85799338 85799710 -116528637 - LTR16A LTR ERVL -15 435 17 297 277 48 70 chr4 85800065 85800296 -116528051 - HAL1 LINE L1 0 2507 2289 1818 155 7 14 chr4 85800296 85800592 -116527755 - AluJo SINE Alu -18 294 1 297 277 48 70 chr4 85800592 85800815 -116527532 - HAL1 LINE L1 -218 2289 2063 295 238 0 0 chr4 85800857 85800920 -116527427 + MIR SINE MIR 113 175 -87 300 281 12 0 chr4 85800944 85801026 -116527321 - HAL1 LINE L1 -475 2032 1950 463 274 82 0 chr4 85801113 85801281 -116527066 + MIR3 SINE MIR 18 198 -10 3627 167 55 30 chr4 85801322 85802082 -116526265 - MER4E LTR ERV1 0 779 1 327 232 16 40 chr4 85802720 85802845 -116525502 + MER104 DNA Tc2 3 124 -56 1941 130 61 0 chr4 85802980 85803273 -116525074 - AluSx SINE Alu -1 311 1 344 303 84 51 chr4 85803310 85803488 -116524859 - MIR SINE MIR -4 258 75 26 0 0 0 chr4 85803913 85803939 -116524408 + AT_rich Low_complexity Low_complexity 1 26 0 509 307 43 0 chr4 85805034 85805174 -116523173 - L2 LINE L2 -1 3271 3126 358 357 45 27 chr4 85805283 85805516 -116522831 + L2 LINE L2 2013 2253 -1061 334 293 194 57 chr4 85805539 85805885 -116522462 - L2 LINE L2 0 3272 2875 582 334 83 37 chr4 85806064 85806519 -116521828 - L2 LINE L2 -650 2664 2189 21 71 0 0 chr4 85806557 85806599 -116521748 + AT_rich Low_complexity Low_complexity 1 42 0 1839 165 3 10 chr4 85806633 85806936 -116521411 + AluJb SINE Alu 1 301 -11 225 284 105 32 chr4 85807184 85807279 -116521068 + L2 LINE L2 3168 3269 -3 687 139 0 0 chr4 85808316 85808431 -116519916 + (TG)n Simple_repeat Simple_repeat 2 116 0 1666 168 0 0 chr4 85808556 85808812 -116519535 + AluSx SINE Alu 1 256 -56 364 276 107 0 chr4 85809093 85809233 -116519114 - MIR SINE MIR -63 145 34 1864 176 11 56 chr4 85810551 85810908 -116517439 + MER58B DNA MER1_type 1 341 0 1753 182 37 82 chr4 85810932 85810966 -116517381 - MLT1C LTR MaLR 0 452 418 2235 117 0 0 chr4 85810966 85811273 -116517074 - AluSx SINE Alu -5 307 1 2023 128 17 7 chr4 85811274 85811572 -116516775 - AluSq SINE Alu -12 301 1 1753 182 37 82 chr4 85811572 85812019 -116516328 - MLT1C LTR MaLR -33 419 3 211 279 29 15 chr4 85812068 85812136 -116516211 + CT-rich Low_complexity Low_complexity 4 72 0 193 308 48 116 chr4 85812142 85812288 -116516059 - L2 LINE L2 0 3272 3137 2058 111 6 44 chr4 85812466 85812781 -116515566 - L1PB4 LINE L1 -2 6154 5852 2347 92 0 0 chr4 85812804 85813098 -116515249 - AluSg SINE Alu -16 294 1 272 272 141 0 chr4 85813528 85813620 -116514727 + MIR SINE MIR 72 176 -86 2294 107 0 0 chr4 85813649 85813947 -116514400 + AluSq SINE Alu 1 298 -15 934 232 5 0 chr4 85814131 85814316 -116514031 + MER5A DNA MER1_type 4 189 0 212 209 0 0 chr4 85815043 85815086 -116513261 + L2 LINE L2 3270 3312 -1 1785 161 3 36 chr4 85816259 85816563 -116511784 + AluJo SINE Alu 1 294 -18 2986 171 12 10 chr4 85816947 85817450 -116510897 + MLT2B2 LTR ERVL 1 504 -11 750 278 25 40 chr4 85817931 85818284 -116510063 + LTR16A LTR ERVL 60 449 -1 2274 103 3 0 chr4 85818391 85818692 -116509655 + AluSx SINE Alu 1 302 -10 836 206 0 57 chr4 85819987 85820181 -116508166 + MER20 DNA MER1_type 7 189 -30 255 370 9 0 chr4 85820428 85820536 -116507811 - L2 LINE L2 -3 3310 3202 308 261 28 109 chr4 85821470 85821681 -116506666 + L1MC4a LINE L1 5680 5873 -1935 280 331 127 6 chr4 85822229 85822386 -116505961 + MIR SINE MIR 1 176 -86 22 80 0 0 chr4 85822959 85823009 -116505338 + AT_rich Low_complexity Low_complexity 1 50 0 24 53 0 0 chr4 85823503 85823541 -116504806 + AT_rich Low_complexity Low_complexity 1 38 0 2273 111 0 22 chr4 85823647 85823963 -116504384 + AluSg SINE Alu 1 309 -1 250 358 33 49 chr4 85823963 85824206 -116504141 - L3 LINE CR1 -7 1570 1332 728 304 85 0 chr4 85824322 85824546 -116503801 + MIR SINE MIR 20 262 0 243 302 16 0 chr4 85824609 85824672 -116503675 - L3 LINE CR1 -483 1094 1031 479 317 96 42 chr4 85824786 85825098 -116503249 - L3 LINE CR1 -584 993 665 1295 337 83 46 chr4 85825107 85826424 -116501923 - L2 LINE L2 0 3272 1838 227 317 106 23 chr4 85826585 85826850 -116501497 - L2 LINE L2 -1540 1774 1488 2263 98 0 3 chr4 85826879 85827185 -116501162 + AluY SINE Alu 1 305 -6 2530 52 0 0 chr4 85827744 85828035 -116500312 - AluY SINE Alu -20 291 1 3280 142 66 32 chr4 85828320 85828910 -116499437 + MER4B LTR ERV1 1 610 0 769 316 8 8 chr4 85829322 85829566 -116498781 - MIR SINE MIR 0 262 19 319 320 135 6 chr4 85829577 85829733 -116498614 + L2 LINE L2 3097 3272 0 225 306 23 23 chr4 85830259 85830346 -116498001 - MIR SINE MIR -65 143 67 610 313 61 19 chr4 85832304 85832518 -116495829 + MIR SINE MIR 2 224 -38 283 274 16 0 chr4 85832862 85832924 -116495423 + L2 LINE L2 3200 3262 -10 355 150 0 0 chr4 85833630 85833690 -116494657 - L1ME2 LINE L1 -10 6154 6095 575 305 72 0 chr4 85834623 85834790 -116493557 + MER8 DNA MER2_type 1 179 -60 227 217 0 0 chr4 85835436 85835482 -116492865 + L3b LINE CR1 1536 1581 -2 363 23 0 0 chr4 85835545 85835589 -116492758 + (TG)n Simple_repeat Simple_repeat 2 45 0 604 165 78 0 chr4 85835592 85835695 -116492652 - FLAM_A SINE Alu -26 116 6 881 241 157 48 chr4 85835700 85836094 -116492253 - L2 LINE L2 -9 3304 2868 904 260 8 39 chr4 85836098 85836356 -116491991 - MIR SINE MIR 0 262 13 23 68 0 0 chr4 85836467 85836511 -116491836 + AT_rich Low_complexity Low_complexity 1 44 0 1884 128 41 7 chr4 85836750 85837040 -116491307 - AluSx SINE Alu -10 302 3 22 35 0 0 chr4 85837488 85837517 -116490830 + AT_rich Low_complexity Low_complexity 1 29 0 249 330 0 0 chr4 85837945 85838036 -116490311 + T-rich Low_complexity Low_complexity 1 91 0 47 61 0 0 chr4 85839940 85840022 -116488325 + AT_rich Low_complexity Low_complexity 1 82 0 683 252 7 9 chr4 85840065 85840228 -116488119 + MIR SINE MIR 29 190 -18 1963 244 58 14 chr4 85840757 85841342 -116487005 - L1ME3 LINE L1 0 6162 5552 280 347 48 16 chr4 85844202 85844326 -116484021 + L2 LINE L2 3145 3272 0 337 313 163 17 chr4 85845606 85845839 -116482508 - L2 LINE L2 -3 3269 3003 3428 127 27 2 chr4 85845945 85846433 -116481914 + Charlie3 DNA MER1_type 1 500 -2210 * 3680 83 0 4 chr4 85846427 85846894 -116481453 + Charlie3 DNA MER1_type 2242 2706 -4 476 300 6 35 chr4 85847452 85847622 -116480725 - MER5B DNA MER1_type -13 165 1 193 308 0 39 chr4 85848064 85848142 -116480205 - MER5B DNA MER1_type -103 75 1 577 231 94 117 chr4 85848225 85848604 -116479743 + MLT1J1 LTR MaLR 14 386 -64 5907 136 51 14 chr4 85849037 85850478 -116477869 - L1MA8 LINE L1 -22 6269 4776 271 336 102 8 chr4 85852186 85852314 -116476033 - L2 LINE L2 -456 2858 2719 2300 140 102 13 chr4 85852846 85853239 -116475108 + MSTA LTR MaLR 1 428 0 353 181 28 14 chr4 85853748 85853820 -116474527 + MLT2F LTR ERVL 591 663 0 1007 227 51 51 chr4 85853883 85854196 -116474151 - MLT2C1 LTR ERVL -84 313 1 25 0 0 0 chr4 85855025 85855050 -116473297 + AT_rich Low_complexity Low_complexity 1 25 0 266 200 80 0 chr4 85855123 85855198 -116473149 - MLT1K LTR MaLR 0 588 508 1550 144 18 43 chr4 85855787 85856064 -116472283 + AluJo SINE Alu 30 299 -13 24 53 0 0 chr4 85857472 85857510 -116470837 + AT_rich Low_complexity Low_complexity 1 38 0 1548 217 18 12 chr4 85857591 85857973 -116470374 + MLT2D LTR ERVL 5 534 -20 414 0 0 0 chr4 85857977 85858023 -116470324 + (CA)n Simple_repeat Simple_repeat 2 47 0 279 250 0 25 chr4 85858260 85858340 -116470007 - MER116 DNA Mariner 0 80 3 319 78 20 0 chr4 85858663 85858714 -116469633 - MLT2B1 LTR ERVL -2 518 467 308 277 0 43 chr4 85858722 85858772 -116469575 - L1MC4 LINE L1 -1339 6703 6657 1107 134 0 0 chr4 85858772 85858951 -116469396 + (TA)n Simple_repeat Simple_repeat 1 179 0 308 277 0 43 chr4 85858951 85858994 -116469353 - L1MC4 LINE L1 -1385 6657 6614 356 0 23 0 chr4 85858995 85859118 -116469229 + (CA)n Simple_repeat Simple_repeat 1 170 0 356 0 23 0 chr4 85859118 85859162 -116469185 + (CA)n Simple_repeat Simple_repeat 2 46 0 260 217 158 48 chr4 85859728 85859863 -116468484 - MIR SINE MIR -59 149 43 382 193 84 0 chr4 85861146 85861229 -116467118 + MIR SINE MIR 113 202 -60 237 132 0 0 chr4 85861402 85861440 -116466907 + (CA)n Simple_repeat Simple_repeat 2 39 0 825 203 0 110 chr4 85861514 85861687 -116466660 + MER58A DNA MER1_type 7 151 -2269 1767 153 21 17 chr4 85861687 85861975 -116466372 + AluJb SINE Alu 1 289 -23 825 203 0 110 chr4 85861975 85862028 -116466319 + MER58A DNA MER1_type 151 208 -16 242 284 80 0 chr4 85862070 85862158 -116466189 + L1MC4a LINE L1 5502 5596 -525 288 53 0 0 chr4 85862576 85862614 -116465733 + (CA)n Simple_repeat Simple_repeat 2 39 0 2460 43 10 16 chr4 85862739 85863044 -116465303 - AluY SINE Alu -8 303 1 228 67 0 0 chr4 85864304 85864334 -116464013 + (TG)n Simple_repeat Simple_repeat 2 31 0 284 274 20 10 chr4 85864373 85864475 -116463872 + (TA)n Simple_repeat Simple_repeat 1 103 0 401 297 80 48 chr4 85864552 85864801 -116463546 + L1MC4a LINE L1 5799 6055 -1753 198 0 0 0 chr4 85866699 85866721 -116461626 + (TTTTC)n Simple_repeat Simple_repeat 3 24 0 2091 154 3 0 chr4 85866727 85867038 -116461309 - AluSx SINE Alu 0 312 1 658 101 0 0 chr4 85867528 85867627 -116460720 + L1PA8 LINE L1 3890 3988 -2158 7845 101 7 50 chr4 85867627 85869622 -116458725 + L1PA8 LINE L1 4193 6166 -6 337 316 92 24 chr4 85869631 85869837 -116458510 + MIR SINE MIR 30 249 -13 3825 126 22 21 chr4 85870643 85871310 -116457037 - L1MA5A LINE L1 0 6297 5630 1955 129 23 10 chr4 85871310 85871753 -116456594 + L1MA5A LINE L1 5160 5608 -689 409 244 0 0 chr4 85872806 85872884 -116455463 - MER81 DNA DNA -36 78 1 896 273 105 44 chr4 85873363 85873792 -116454555 + MLT1L LTR MaLR 160 614 -1 198 91 0 0 chr4 85874283 85874316 -116454031 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 670 291 17 0 chr4 85874553 85874728 -116453619 + MER45A DNA AcHobo 1 178 0 2224 105 13 7 chr4 85876024 85876329 -116452018 - AluSc SINE Alu -1 308 2 1092 277 60 22 chr4 85876765 85877264 -116451083 + LTR33 LTR ERVL 2 519 -2 481 290 21 21 chr4 85877303 85877448 -116450899 + MER5A DNA MER1_type 38 182 -7 1926 155 139 16 chr4 85877460 85877841 -116450506 - MSTA LTR MaLR 0 428 1 8623 181 23 19 chr4 85877841 85877898 -116450449 - MSTA-int LTR MaLR 0 1651 1596 2128 132 0 7 chr4 85877898 85878194 -116450153 + AluSx SINE Alu 1 294 -18 8623 181 23 19 chr4 85878194 85879781 -116448566 - MSTA-int LTR MaLR -55 1596 1 2105 133 144 5 chr4 85879781 85880157 -116448190 - MSTA LTR MaLR 0 428 1 1765 165 69 98 chr4 85880613 85881133 -116447214 + MLT1D LTR MaLR 1 505 0 21 57 0 0 chr4 85882266 85882301 -116446046 + AT_rich Low_complexity Low_complexity 1 35 0 247 238 0 12 chr4 85882502 85882582 -116445765 - HAL1 LINE L1 -1388 1119 1041 739 206 79 13 chr4 85882600 85882939 -116445408 + MER31B LTR ERV1 33 510 -4 379 265 0 105 chr4 85882980 85883180 -116445167 - HAL1 LINE L1 -1457 1050 872 751 250 65 36 chr4 85884288 85884483 -116443864 + MIR SINE MIR 6 211 -51 833 214 48 29 chr4 85884483 85884689 -116443658 - MER63A DNA MER1_type 0 210 1 751 250 65 36 chr4 85884689 85884741 -116443606 + MIR SINE MIR 211 260 -2 360 327 89 6 chr4 85887202 85887370 -116440977 + MIR SINE MIR 28 209 -53 25 31 0 0 chr4 85887412 85887444 -116440903 + AT_rich Low_complexity Low_complexity 1 32 0 308 258 22 34 chr4 85889092 85889181 -116439166 + L2 LINE L2 3226 3313 0 245 250 62 80 chr4 85889514 85889626 -116438721 + MLT1L LTR MaLR 131 240 -375 2259 102 0 0 chr4 85889656 85889950 -116438397 - AluY SINE Alu -17 294 1 416 269 108 9 chr4 85890055 85890267 -116438080 + MLT1K LTR MaLR 332 564 -24 618 293 108 33 chr4 85890798 85891010 -116437337 - MIR SINE MIR -9 253 26 1916 183 50 88 chr4 85891046 85891501 -116436846 + MLT1D LTR MaLR 1 436 -69 2061 110 0 3 chr4 85891501 85891814 -116436533 - AluSg SINE Alu 0 312 1 1916 183 50 88 chr4 85891814 85891882 -116436465 + MLT1D LTR MaLR 436 505 0 2665 128 29 83 chr4 85891913 85892506 -116435841 - MER34B LTR ERV1 0 565 5 22 56 0 0 chr4 85895270 85895306 -116433041 + AT_rich Low_complexity Low_complexity 1 36 0 2342 99 10 0 chr4 85895311 85895613 -116432734 + AluSq SINE Alu 1 305 -8 930 123 66 75 chr4 85895647 85895859 -116432488 + MER34C LTR ERV1 12 221 -364 1048 153 5 63 chr4 85895878 85896101 -116432246 + MER34C LTR ERV1 376 585 0 27 29 0 0 chr4 85896229 85896263 -116432084 + AT_rich Low_complexity Low_complexity 1 34 0 1540 143 0 4 chr4 85896406 85896636 -116431711 + AluSg/x SINE Alu 68 296 -16 21 0 0 0 chr4 85897397 85897418 -116430929 + AT_rich Low_complexity Low_complexity 1 21 0 354 322 28 0 chr4 85897847 85897990 -116430357 - MER103 DNA DNA -1 165 19 194 244 77 13 chr4 85898540 85898618 -116429729 - L2 LINE L2 -8 3305 3223 494 280 113 72 chr4 85899988 85900363 -116427984 + HAL1 LINE L1 130 535 -1972 1704 150 61 25 chr4 85900363 85900689 -116427658 + MER44D DNA MER2_type 1 608 -1 494 280 113 72 chr4 85900689 85900855 -116427492 + HAL1 LINE L1 535 693 -1814 437 346 20 0 chr4 85901260 85901413 -116426934 + MIR SINE MIR 13 168 -94 1116 39 0 0 chr4 85902730 85902907 -116425440 - AluY SINE Alu 0 331 155 10678 14 2 0 chr4 85904178 85906258 -116422089 + L1HS LINE L1 4074 6155 0 200 191 0 0 chr4 85907004 85907046 -116421301 + (CAT)n Simple_repeat Simple_repeat 3 44 0 6516 84 8 3 chr4 85907253 85908291 -116420056 + L1PA10 LINE L1 5119 6160 -8 1175 140 10 0 chr4 85908534 85908741 -116419606 - L1MA6 LINE L1 0 6300 6092 369 78 0 31 chr4 85908741 85908804 -116419543 + L1PA7 LINE L1 6088 6149 -5 622 144 45 15 chr4 85908820 85908969 -116419378 + L1MA6 LINE L1 5935 6077 -223 1165 195 116 55 chr4 85909270 85909614 -116418733 + MLT1A1 LTR MaLR 1 365 0 679 268 146 0 chr4 85909614 85909827 -116418520 - MIR SINE MIR 0 262 19 1144 253 56 13 chr4 85910279 85910654 -116417693 + L1ME1 LINE L1 57 447 -5949 2322 107 0 0 chr4 85910666 85910966 -116417381 - AluSg SINE Alu -10 300 1 411 132 40 0 chr4 85910976 85911052 -116417295 - L1MC2 LINE L1 -2 6342 6264 352 224 35 10 chr4 85911052 85911162 -116417185 + L1ME1 LINE L1 4913 5021 -1194 531 203 0 30 chr4 85911163 85911405 -116416942 + GA-rich Low_complexity Low_complexity 1 234 0 2829 233 51 24 chr4 85911423 85911718 -116416629 + L1ME1 LINE L1 5032 5317 -918 2165 96 0 7 chr4 85911718 85912018 -116416329 - AluSc SINE Alu 0 298 1 2829 233 51 24 chr4 85912018 85912892 -116415455 + L1ME1 LINE L1 5317 6230 -5 1818 161 10 7 chr4 85914014 85914318 -116414029 - AluJb SINE Alu -7 305 1 22 0 0 0 chr4 85914894 85914916 -116413431 + AT_rich Low_complexity Low_complexity 1 22 0 1767 140 42 0 chr4 85914923 85915188 -116413159 + AluSx SINE Alu 11 286 -26 27 0 0 0 chr4 85915188 85915215 -116413132 + AT_rich Low_complexity Low_complexity 1 27 0 254 297 59 20 chr4 85915335 85915436 -116412911 - L2 LINE L2 0 3313 3209 21492 52 0 2 chr4 85915579 85918378 -116409969 + L1PA3 LINE L1 3 2795 -3351 13845 28 0 8 chr4 85918378 85920806 -116407541 + L1PA3 LINE L1 3735 6155 0 1613 161 55 48 chr4 85921788 85922135 -116406212 - AluJo SINE Alu 0 349 1 322 265 17 76 chr4 85922818 85922879 -116405468 + MIR SINE MIR 20 83 -125 1386 211 89 6 chr4 85922879 85923216 -116405131 + MLT1A1 LTR MaLR 1 365 0 322 265 17 76 chr4 85923216 85923289 -116405058 + MIR SINE MIR 83 148 -60 888 293 95 25 chr4 85923596 85924081 -116404266 - LTR33 LTR ERVL -2 519 1 243 248 60 68 chr4 85924683 85924800 -116403547 - MIR SINE MIR -27 235 120 223 236 104 57 chr4 85925179 85925285 -116403062 + L2 LINE L2 3198 3308 -5 555 282 141 0 chr4 85925592 85925755 -116402592 - MIR SINE MIR -10 252 67 306 302 15 50 chr4 85925945 85926089 -116402258 + MIR SINE MIR 21 159 -63 449 258 138 13 chr4 85926672 85926761 -116401586 - L1MA9 LINE L1 -25 6266 6190 270 0 0 0 chr4 85926761 85926791 -116401556 + (TG)n Simple_repeat Simple_repeat 1 30 0 449 258 138 13 chr4 85926791 85926964 -116401383 - L1MA9 LINE L1 -101 6190 5963 2268 115 8 24 chr4 85928180 85928553 -116399794 - THE1C LTR MaLR -8 367 1 321 268 113 7 chr4 85929844 85929986 -116398361 - MIR SINE MIR -28 234 78 304 340 15 47 chr4 85930772 85930991 -116397356 - MIR3 SINE MIR -50 212 2 24 0 0 0 chr4 85931752 85931776 -116396571 + AT_rich Low_complexity Low_complexity 1 24 0 828 287 20 8 chr4 85931776 85932023 -116396324 - MIR SINE MIR -11 251 2 187 319 0 0 chr4 85932444 85932491 -116395856 + L2 LINE L2 3226 3272 0 705 219 66 50 chr4 85934142 85934384 -116393963 - MER112 DNA MER1_type -6 254 9 446 139 0 0 chr4 85934757 85934829 -116393518 + MER53 DNA DNA 2 73 -116 509 245 68 27 chr4 85935000 85935147 -116393200 - MIR SINE MIR -26 236 84 260 308 33 0 chr4 85935221 85935312 -116393035 - L2 LINE L2 -238 3034 2941 664 214 0 0 chr4 85935486 85935612 -116392735 + FLAM_A SINE Alu 5 130 -3 1591 176 3 46 chr4 85935632 85935934 -116392413 - AluJo SINE Alu -23 289 1 576 317 54 0 chr4 85936078 85936277 -116392070 + MIR SINE MIR 5 213 -49 240 123 18 88 chr4 85936322 85936379 -116391968 + THE1A LTR MaLR 303 355 0 560 302 60 35 chr4 85936530 85936781 -116391566 + MIR SINE MIR 8 261 -1 180 0 0 0 chr4 85939367 85939387 -116388960 + (CAGC)n Simple_repeat Simple_repeat 2 21 0 31 99 0 0 chr4 85940174 85940275 -116388072 + GC_rich Low_complexity Low_complexity 1 101 0 1381 80 0 0 chr4 85941035 85941210 -116387137 - AluSg/x SINE Alu -5 307 133 374 251 120 48 chr4 85941283 85941450 -116386897 - MER5A DNA MER1_type -7 182 4 591 228 62 21 chr4 85942105 85942157 -116386190 + MIR SINE MIR 22 70 -192 1182 184 46 113 chr4 85942157 85942548 -116385799 + MLT1A1 LTR MaLR 1 365 0 591 228 62 21 chr4 85942548 85942640 -116385707 + MIR SINE MIR 70 172 -90 2302 186 91 27 chr4 85942641 85943189 -116385158 - MLT1E2 LTR MaLR 0 626 44 244 286 18 89 chr4 85943217 85943329 -116385018 + MIR SINE MIR 156 259 -3 240 260 89 25 chr4 85943364 85943471 -116384876 - MIR SINE MIR -56 152 23 312 169 34 0 chr4 85943650 85943709 -116384638 + MER66B LTR ERV1 284 344 -142 330 205 13 0 chr4 85944135 85944213 -116384134 + L1ME4a LINE L1 5606 5684 -437 717 224 62 6 chr4 85944269 85944430 -116383917 + MIR SINE MIR 1 170 -92 250 286 52 0 chr4 85944554 85944631 -116383716 + L2 LINE L2 3232 3312 -1 585 242 165 3 chr4 85944677 85945004 -116383343 + L1ME4a LINE L1 5716 6095 -26 204 67 0 0 chr4 85946382 85946412 -116381935 + (TC)n Simple_repeat Simple_repeat 1 30 0 525 308 0 7 chr4 85946416 85946562 -116381785 - MIR3 SINE MIR -63 145 1 220 241 0 19 chr4 85946616 85946670 -116381677 + A-rich Low_complexity Low_complexity 1 53 0 550 232 85 62 chr4 85948291 85948515 -116379832 - MIR SINE MIR 0 262 34 312 27 0 0 chr4 85949763 85949800 -116378547 + (CA)n Simple_repeat Simple_repeat 2 38 0 30 0 0 0 chr4 85950334 85950364 -116377983 + AT_rich Low_complexity Low_complexity 1 30 0 228 233 23 12 chr4 85950415 85950501 -116377846 + Charlie7 DNA MER1_type 2510 2596 -16 2054 127 0 7 chr4 85950509 85950792 -116377555 + AluSg SINE Alu 1 281 -29 771 271 113 0 chr4 85951522 85951813 -116376534 - LTR16C LTR ERVL 0 491 168 425 233 8 58 chr4 85951891 85952011 -116376336 - MER81 DNA DNA 0 114 1 2045 162 136 18 chr4 85952259 85952709 -116375638 - MLT1D LTR MaLR 0 505 3 230 273 0 0 chr4 85952786 85952852 -116375495 - HsTC2 DNA Tc2 -1825 73 8 381 314 141 25 chr4 85952934 85953211 -116375136 - L2 LINE L2 0 3313 3005 1818 98 14 0 chr4 85953652 85953929 -116374418 - L1MA2 LINE L1 0 6304 6024 265 280 70 30 chr4 85955416 85955516 -116372831 + L2 LINE L2 3168 3271 -1 405 291 117 10 chr4 85956324 85956520 -116371827 - MIR SINE MIR -31 231 15 346 246 70 7 chr4 85957023 85957165 -116371182 - L1ME4a LINE L1 -12 6109 5959 378 115 38 55 chr4 85957324 85957507 -116370840 + (TA)n Simple_repeat Simple_repeat 1 180 0 181 421 13 0 chr4 85958012 85958088 -116370259 + L2 LINE L2 3148 3224 -48 2142 121 0 7 chr4 85958412 85958710 -116369637 - AluSx SINE Alu -11 301 6 1819 112 0 73 chr4 85962057 85962343 -116366004 - AluSx SINE Alu -47 265 1 552 279 141 55 chr4 85962739 85963123 -116365224 - LTR33 LTR ERVL -102 419 3 1942 186 30 22 chr4 85963400 85963771 -116364576 - MLT1A2 LTR MaLR 0 374 1 217 317 0 30 chr4 85963853 85963954 -116364393 + L2 LINE L2 2668 2765 -549 1797 180 0 0 chr4 85964031 85964354 -116363993 + AluSx SINE Alu 1 323 0 266 392 104 18 chr4 85964384 85964606 -116363741 + L2 LINE L2 2932 3172 -100 224 244 0 0 chr4 85964866 85964907 -116363440 + MIR SINE MIR 19 59 -203 396 126 32 74 chr4 85964907 85965002 -116363345 - MER53 DNA DNA -3 186 96 745 237 7 0 chr4 85965070 85965222 -116363125 + MIR SINE MIR 47 199 -63 221 119 24 0 chr4 85965763 85965805 -116362542 + (CA)n Simple_repeat Simple_repeat 2 44 0 404 299 178 0 chr4 85968082 85968239 -116360108 - MER5A DNA MER1_type -4 185 1 349 279 10 112 chr4 85969583 85969780 -116358567 + L1MC4a LINE L1 5710 5886 -1922 26 0 0 0 chr4 85969979 85970005 -116358342 + AT_rich Low_complexity Low_complexity 1 26 0 720 274 61 43 chr4 85970063 85970293 -116358054 + MIR SINE MIR 3 236 -26 234 62 0 0 chr4 85972186 85972218 -116356129 + (TAA)n Simple_repeat Simple_repeat 2 33 0 618 51 0 0 chr4 85973057 85973135 -116355212 + (TCTCCC)n Simple_repeat Simple_repeat 2 79 0 6114 89 16 20 chr4 85973142 85974645 -116353702 + SVA Other Other 33 1386 0 273 214 133 41 chr4 85975445 85975543 -116352804 + MLT1L LTR MaLR 509 615 0 2385 100 0 3 chr4 85975574 85975884 -116352463 + AluSq SINE Alu 1 309 -4 1191 187 181 77 chr4 85976011 85976228 -116352119 + MER96B DNA MER1_type 4 197 -220 2038 98 29 0 chr4 85976228 85976536 -116351811 + AluSq SINE Alu 1 316 0 1191 187 181 77 chr4 85976536 85976692 -116351655 + MER96B DNA MER1_type 197 417 0 1566 142 13 8 chr4 85976773 85977012 -116351335 - L1PA16 LINE L1 0 6166 5927 1195 104 0 33 chr4 85977012 85977195 -116351152 + L1PA16 LINE L1 5724 5900 -266 2462 197 53 18 chr4 85977209 85977716 -116350631 + MER74A LTR ERVL 34 558 0 320 259 69 17 chr4 85977730 85977846 -116350501 - L2 LINE L2 -222 3091 2970 267 183 140 43 chr4 85978488 85978581 -116349766 - L1ME4a LINE L1 -6 6115 6014 194 294 29 0 chr4 85978585 85978653 -116349694 - L2 LINE L2 -3 3310 3241 330 313 100 100 chr4 85978699 85979019 -116349328 + L2 LINE L2 2935 3254 -18 2131 116 3 7 chr4 85979765 85980057 -116348290 + AluSx SINE Alu 1 291 -21 229 127 55 0 chr4 85980128 85980183 -116348164 + (TTATA)n Simple_repeat Simple_repeat 4 61 0 2173 152 26 0 chr4 85980258 85980601 -116347746 - THE1B LTR MaLR -12 352 1 675 282 190 19 chr4 85980601 85981024 -116347323 - LTR33 LTR ERVL -11 510 15 2351 72 14 0 chr4 85981180 85981471 -116346876 + AluSg SINE Alu 1 295 -15 2498 58 3 16 chr4 85982446 85982755 -116345592 + AluY SINE Alu 1 305 -6 1655 162 121 18 chr4 85983318 85983388 -116344959 - THE1C LTR MaLR 0 375 314 8217 32 0 0 chr4 85983388 85985079 -116343268 - L1PA3 LINE L1 0 6155 4464 1655 162 121 18 chr4 85985079 85985348 -116342999 - THE1C LTR MaLR -61 314 1 2244 86 0 0 chr4 85985425 85985704 -116342643 + AluY SINE Alu 18 296 -15 26 0 0 0 chr4 85986580 85986606 -116341741 + AT_rich Low_complexity Low_complexity 1 26 0 278 280 8 72 chr4 85987282 85987407 -116340940 + L1MC/D LINE L1 5693 5809 -1999 423 269 170 6 chr4 85987435 85987617 -116340730 + MIR SINE MIR 37 248 -14 888 254 68 27 chr4 85988244 85988539 -116339808 - MLT1I LTR MaLR -59 350 44 1386 215 99 0 chr4 85988634 85988936 -116339411 - MER46C DNA MER2_type -3 335 4 2258 111 3 16 chr4 85989364 85989679 -116338668 + AluSx SINE Alu 1 311 -1 182 270 111 0 chr4 85991028 85991091 -116337256 - L2 LINE L2 -59 3254 3185 6993 104 25 10 chr4 85991259 85991369 -116336978 + L1MA2 LINE L1 5172 5279 -1025 1728 158 31 14 chr4 85991369 85991499 -116336848 + AluSx SINE Alu 1 127 -185 216 0 0 0 chr4 85991499 85991523 -116336824 + (TAA)n Simple_repeat Simple_repeat 3 26 0 1728 158 31 14 chr4 85991523 85991683 -116336664 + AluSx SINE Alu 127 296 -16 6993 104 25 10 chr4 85991683 85992687 -116335660 + L1MA2 LINE L1 5279 6304 0 234 348 102 0 chr4 85994128 85994246 -116334101 - MER5A DNA MER1_type -50 139 10 200 221 0 15 chr4 85994871 85994939 -116333408 + GA-rich Low_complexity Low_complexity 3 69 0 193 317 200 8 chr4 85995365 85995485 -116332862 - L2 LINE L2 -7 3265 3123 22 0 0 0 chr4 85996606 85996628 -116331719 + AT_rich Low_complexity Low_complexity 1 22 0 191 117 78 13 chr4 85996953 85996979 -116331368 + (TA)n Simple_repeat Simple_repeat 2 25 -58 1755 183 10 0 chr4 85996979 85997285 -116331062 + AluJo SINE Alu 1 309 -3 191 117 78 13 chr4 85997285 85997335 -116331012 + (TA)n Simple_repeat Simple_repeat 25 83 0 900 248 120 56 chr4 85997487 85997862 -116330485 - LTR16A LTR ERVL -8 442 44 267 294 69 0 chr4 85997980 85998082 -116330265 + MIR3 SINE MIR 86 194 -14 2232 87 40 3 chr4 85998212 85998511 -116329836 - AluY SINE Alu -1 310 1 2274 86 0 0 chr4 85999438 85999730 -116328617 + L1PB1 LINE L1 5500 5791 -360 210 143 0 0 chr4 85999734 85999769 -116328578 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 2832 93 5 0 chr4 85999770 86000137 -116328210 + L1PB1 LINE L1 5782 6150 -1 2092 130 3 0 chr4 86000279 86000578 -116327769 + AluSq SINE Alu 1 300 -13 851 169 0 0 chr4 86000935 86001065 -116327282 + FLAM_C SINE Alu 1 130 -3 4040 148 27 15 chr4 86001168 86001883 -116326464 + L1MB2 LINE L1 5447 6169 -2 338 310 103 11 chr4 86002050 86002224 -116326123 + MIR SINE MIR 2 191 -71 195 42 0 0 chr4 86002636 86002660 -116325687 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2246 180 7 33 chr4 86002661 86003110 -116325237 - L1PA16 LINE L1 -20 6146 5710 213 365 0 0 chr4 86004704 86004789 -116323558 + MIR SINE MIR 57 141 -121 390 264 61 55 chr4 86005126 86005289 -116323058 - MIR SINE MIR -52 210 47 345 24 0 0 chr4 86005390 86005432 -116322915 + (CA)n Simple_repeat Simple_repeat 1 42 0 529 155 0 0 chr4 86005508 86005592 -116322755 + L1MD3 LINE L1 7731 7814 -181 27 0 0 0 chr4 86006168 86006195 -116322152 + AT_rich Low_complexity Low_complexity 1 27 0 7105 30 0 1 chr4 86007161 86008006 -116320341 - L1PA3 LINE L1 -3317 2829 1986 * 17882 29 4 0 chr4 86008004 86011332 -116317015 + L1PA3 LINE L1 2812 6152 -3 378 0 0 0 chr4 86011376 86011418 -116316929 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1224 148 19 47 chr4 86011767 86012023 -116316324 + MLT1B LTR MaLR 1 249 -141 5063 95 14 5 chr4 86012023 86012784 -116315563 + L1PB2 LINE L1 5379 6146 -5 698 170 59 0 chr4 86012789 86012924 -116315423 + MLT1B LTR MaLR 245 387 -3 22 0 0 0 chr4 86013297 86013319 -116315028 + AT_rich Low_complexity Low_complexity 1 22 0 586 169 0 111 chr4 86013557 86013729 -116314618 + L1MA10 LINE L1 6092 6244 -90 2078 122 14 3 chr4 86013729 86014025 -116314322 - AluSx SINE Alu -13 299 1 1712 130 14 18 chr4 86014554 86014839 -116313508 + L1PA16 LINE L1 5874 6157 -9 1178 210 64 45 chr4 86015251 86015467 -116312880 - Tigger2 DNA MER2_type 0 2718 2491 2278 104 3 19 chr4 86015467 86015785 -116312562 + AluSq SINE Alu 1 313 0 1178 210 64 45 chr4 86015785 86015944 -116312403 - Tigger2 DNA MER2_type -227 2491 2336 1249 147 6 106 chr4 86016070 86016158 -116312189 - Tigger2a DNA MER2_type -2419 289 194 1123 263 13 16 chr4 86016158 86016462 -116311885 + AluSq SINE Alu 1 303 0 1249 147 6 106 chr4 86016462 86016693 -116311654 - Tigger2a DNA MER2_type -2514 194 2 1777 191 3 3 chr4 86016701 86016999 -116311348 + AluSx SINE Alu 1 298 -14 843 165 0 0 chr4 86017062 86017189 -116311158 + FLAM_C SINE Alu 1 127 -16 355 327 65 29 chr4 86017205 86017480 -116310867 + L1MC4a LINE L1 5723 6007 -1801 220 213 24 0 chr4 86017866 86018029 -116310318 + GA-rich Low_complexity Low_complexity 1 166 0 411 274 72 28 chr4 86018188 86018528 -116309819 + L1ME LINE L1 5305 5657 -464 30 27 0 0 chr4 86018641 86018678 -116309669 + AT_rich Low_complexity Low_complexity 1 37 0 2381 144 20 20 chr4 86018707 86019103 -116309244 - MSTD LTR MaLR 0 396 1 256 219 14 14 chr4 86019831 86019904 -116308443 + LTR33A LTR ERVL 451 523 0 341 216 104 12 chr4 86020691 86020800 -116307547 + MIR SINE MIR 43 158 -66 780 138 28 83 chr4 86020825 86021006 -116307341 + MER5A DNA MER1_type 1 171 -18 271 155 42 14 chr4 86021609 86021680 -116306667 + L1PB4 LINE L1 6084 6156 0 508 274 179 28 chr4 86023149 86023250 -116305097 - MIR SINE MIR 0 262 178 2183 126 111 8 chr4 86023250 86023638 -116304709 + MSTA LTR MaLR 1 428 0 508 274 179 28 chr4 86023638 86023748 -116304599 - MIR SINE MIR -84 178 19 305 322 21 14 chr4 86023931 86024074 -116304273 + L1MC5 LINE L1 4460 4603 -1543 6882 124 39 16 chr4 86024077 86025234 -116303113 + Tigger1 DNA MER2_type 1 1183 -1235 324 314 0 53 chr4 86025916 86026104 -116302243 + (TGG)n Simple_repeat Simple_repeat 1 178 0 217 337 0 0 chr4 86026125 86026211 -116302136 + (TGG)n Simple_repeat Simple_repeat 2 87 0 56 39 0 0 chr4 86028320 86028397 -116299950 + AT_rich Low_complexity Low_complexity 1 77 0 7828 115 16 3 chr4 86028416 86029653 -116298694 + Tigger1 DNA MER2_type 1166 2418 0 245 279 0 12 chr4 86029939 86030025 -116298322 + L1P LINE L1 4920 5004 -1142 351 296 104 55 chr4 86030032 86030377 -116297970 + L1MC5 LINE L1 5009 5370 -776 1524 196 20 96 chr4 86030386 86030926 -116297421 + L1MC5 LINE L1 5457 5955 -1853 671 195 13 27 chr4 86031079 86031228 -116297119 - MER106B DNA MER1_type -911 148 2 393 139 14 0 chr4 86031322 86031394 -116296953 - MSTB2 LTR MaLR 0 457 385 30 69 0 0 chr4 86031547 86031605 -116296742 + AT_rich Low_complexity Low_complexity 1 58 0 1150 239 68 73 chr4 86031752 86032372 -116295975 + L1MC5 LINE L1 6612 7228 -733 2182 115 3 0 chr4 86032396 86032691 -116295656 + AluSg SINE Alu 1 296 -14 984 194 38 0 chr4 86032842 86033053 -116295294 + MER20 DNA MER1_type 1 219 0 1862 117 10 17 chr4 86033172 86033471 -116294876 + MER47A DNA MER2_type 70 366 0 457 236 67 71 chr4 86033492 86033746 -116294601 + L1MC5 LINE L1 7610 7862 -99 869 163 39 0 chr4 86034108 86034286 -116294061 - L1MA9 LINE L1 -9 6303 6119 283 217 0 0 chr4 86034287 86034356 -116293991 - L1MA9 LINE L1 -244 6068 6000 355 275 90 39 chr4 86035216 86035394 -116292953 + MLT1H1 LTR MaLR 180 366 -189 928 108 0 23 chr4 86035652 86035781 -116292566 + FLAM_C SINE Alu 6 131 -12 2464 66 3 3 chr4 86036770 86037075 -116291272 + AluY SINE Alu 1 305 -6 1879 181 0 0 chr4 86037510 86037803 -116290544 + AluJb SINE Alu 1 293 -19 235 62 0 0 chr4 86037963 86037995 -116290352 + HSMAR1 DNA Mariner 1 32 -1255 22 35 0 0 chr4 86039494 86039523 -116288824 + AT_rich Low_complexity Low_complexity 1 29 0 207 137 20 59 chr4 86040827 86040878 -116287469 + L2 LINE L2 3265 3313 0 244 273 36 45 chr4 86040907 86041017 -116287330 - L2 LINE L2 -73 3240 3132 944 288 72 21 chr4 86041022 86041452 -116286895 + LTR16C LTR ERVL 3 454 -37 213 39 0 0 chr4 86041470 86041496 -116286851 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 950 119 17 28 chr4 86041496 86041673 -116286674 - L1PA10 LINE L1 -21 6147 5973 1967 77 36 46 chr4 86041681 86041778 -116286569 - L1PA10 LINE L1 -584 5584 5488 1933 102 27 87 chr4 86041778 86042111 -116286236 - AluSq SINE Alu 0 313 1 1967 77 36 46 chr4 86042111 86042392 -116285955 - L1PA10 LINE L1 -680 5488 5222 936 81 0 0 chr4 86042392 86042515 -116285832 + L1PA7 LINE L1 6028 6151 -3 1967 77 36 46 chr4 86042515 86042575 -116285772 - L1PA10 LINE L1 -946 5222 5163 180 333 64 26 chr4 86042650 86042728 -116285619 - L2 LINE L2 -237 3076 2996 693 309 180 20 chr4 86043255 86043744 -116284603 - L3 LINE CR1 -1 1576 1010 655 308 148 52 chr4 86043766 86044380 -116283967 + L2 LINE L2 2079 2751 -563 2355 106 0 6 chr4 86044684 86044995 -116283352 + AluSc SINE Alu 1 309 0 661 69 0 49 chr4 86049448 86049550 -116278797 - L1PA13 LINE L1 -211 5952 5856 23543 119 2 7 chr4 86049553 86053391 -116274956 + L1P LINE L1 952 4772 -1374 22310 84 1 1 chr4 86053491 86057400 -116270947 + L1PA7 LINE L1 2237 6151 -3 1748 146 61 3 chr4 86057662 86057957 -116270390 + AluSx SINE Alu 1 312 0 876 272 141 18 chr4 86057963 86058360 -116269987 - MLT1D LTR MaLR -59 446 1 267 191 0 0 chr4 86058965 86059028 -116269319 + CT-rich Low_complexity Low_complexity 2 64 0 219 69 0 0 chr4 86059028 86059057 -116269290 + (CA)n Simple_repeat Simple_repeat 1 29 0 1580 77 18 0 chr4 86059841 86060062 -116268285 + MER30 DNA MER1_type 6 230 0 931 259 39 19 chr4 86060163 86060472 -116267875 - LTR16C LTR ERVL -24 467 153 240 329 0 13 chr4 86061050 86061126 -116267221 - L2 LINE L2 -2 3311 3237 352 262 95 16 chr4 86061686 86061812 -116266535 + MIR SINE MIR 112 247 -15 198 103 0 0 chr4 86062125 86062154 -116266193 + (CA)n Simple_repeat Simple_repeat 2 30 0 2076 127 30 0 chr4 86062802 86063101 -116265246 - AluSx SINE Alu -3 309 2 474 300 128 9 chr4 86063292 86063519 -116264828 + MIR SINE MIR 1 254 -8 350 271 61 77 chr4 86063534 86063715 -116264632 - MER5A DNA MER1_type 0 189 12 586 275 63 36 chr4 86063733 86063955 -116264392 + L1ME3A LINE L1 5943 6170 0 562 241 0 116 chr4 86064006 86064205 -116264142 - MER5B DNA MER1_type -2 176 1 872 238 16 42 chr4 86064217 86064406 -116263941 - MER5A DNA MER1_type -5 184 1 1853 229 68 28 chr4 86065682 86065774 -116262573 + L1ME2 LINE L1 3754 3841 -2323 2184 106 20 3 chr4 86065774 86066067 -116262280 + AluSx SINE Alu 1 298 -14 1853 229 68 28 chr4 86066067 86067478 -116260869 + L1ME2 LINE L1 3841 5677 -487 1765 77 20 0 chr4 86067478 86067725 -116260622 + L1MA1 LINE L1 6047 6298 -4 1853 229 68 28 chr4 86067725 86068173 -116260174 + L1ME2 LINE L1 5677 6105 -59 * 14547 162 38 38 chr4 86068170 86075168 -116253179 + L1MA3 LINE L1 8 7724 0 233 32 0 0 chr4 86075196 86075227 -116253120 + L1ME3 LINE L1 6125 6155 -7 2810 82 12 18 chr4 86076009 86076410 -116251937 + L1PA8 LINE L1 5771 6169 -3 1800 173 7 10 chr4 86076444 86076744 -116251603 + AluSx SINE Alu 1 299 -13 13660 192 14 24 chr4 86076754 86078252 -116250095 + L1PB1 LINE L1 1456 2968 -3183 7234 42 7 0 chr4 86078252 86079720 -116248627 + L1PA5 LINE L1 4673 6146 -8 13660 192 14 24 chr4 86079720 86082568 -116245779 + L1PB1 LINE L1 2968 5746 -405 333 0 0 0 chr4 86082568 86082605 -116245742 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 13660 192 14 24 chr4 86082605 86083007 -116245340 + L1PB1 LINE L1 5746 6151 0 521 289 48 10 chr4 86083012 86083306 -116245041 + L1M4 LINE L1 2316 2620 -3526 5204 161 24 9 chr4 86083344 86084448 -116243899 + L1MA4A LINE L1 4255 5374 -772 1286 160 51 26 chr4 86084437 86084804 -116243543 + L1MA4A LINE L1 5856 6276 -24 * 770 308 17 52 chr4 86084809 86084950 -116243397 - HERV16 LTR ERVL -2514 2482 2338 1954 142 10 3 chr4 86084950 86085246 -116243101 + AluSx SINE Alu 1 298 -14 770 308 17 52 chr4 86085246 86085452 -116242895 - HERV16 LTR ERVL -2658 2338 2147 1019 201 44 0 chr4 86085795 86086024 -116242323 + L1ME4a LINE L1 5422 5660 -504 6881 61 2 6 chr4 86086026 86087107 -116241240 + L1PA7 LINE L1 5073 6151 -3 5384 106 24 24 chr4 86087168 86088073 -116240274 + L1MA3 LINE L1 5400 6304 -1 2170 128 3 0 chr4 86088169 86088474 -116239873 + AluSc SINE Alu 1 306 -3 2533 14 7 0 chr4 86088704 86088996 -116239351 - L1PA4 LINE L1 0 6155 5862 219 301 27 27 chr4 86089289 86089362 -116238985 - L2 LINE L2 -1012 2302 2230 21 36 0 0 chr4 86090093 86090121 -116238226 + AT_rich Low_complexity Low_complexity 1 28 0 723 201 7 0 chr4 86090135 86090284 -116238063 - MER31A LTR ERV1 -4 481 332 914 90 8 0 chr4 86090290 86090424 -116237923 + (GGAA)n Simple_repeat Simple_repeat 4 138 0 234 344 13 32 chr4 86090622 86090776 -116237571 - LTR33A LTR ERVL -369 154 4 503 341 93 53 chr4 86090887 86091393 -116236954 - L2 LINE L2 -194 3078 2540 1168 268 36 34 chr4 86091765 86092180 -116236167 + LTR16A LTR ERVL 35 450 0 620 240 199 23 chr4 86092286 86092507 -116235840 - MIR SINE MIR 0 262 3 548 104 0 0 chr4 86092823 86092900 -116235447 + U6 snRNA snRNA 1 77 -30 40775 51 1 1 chr4 86093687 86099871 -116228476 + L1PA4 LINE L1 9 6155 0 22 0 0 0 chr4 86100025 86100047 -116228300 + AT_rich Low_complexity Low_complexity 1 22 0 535 258 29 73 chr4 86100047 86100361 -116227986 + L1ME4a LINE L1 5629 5928 -193 328 298 75 37 chr4 86100373 86100534 -116227813 + L1ME LINE L1 4651 4817 -1329 1779 150 33 0 chr4 86100561 86100855 -116227492 - AluJb SINE Alu 0 304 2 330 225 0 0 chr4 86100884 86100964 -116227383 + (CATA)n Simple_repeat Simple_repeat 3 82 0 602 266 55 40 chr4 86100997 86101615 -116226732 + L1ME LINE L1 4906 5535 -635 9358 160 25 31 chr4 86102398 86104252 -116224095 + L1P LINE L1 11 1853 -4293 780 294 109 62 chr4 86154266 86154796 -116173551 + L2 LINE L2 2104 2658 -656 767 40 0 10 chr4 86154798 86154898 -116173449 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 2023 138 0 0 chr4 86154905 86155188 -116173159 - AluSq SINE Alu -30 283 1 1310 108 11 11 chr4 86155366 86155552 -116172795 + AluY SINE Alu 114 299 -12 310 353 139 23 chr4 86155728 86155901 -116172446 + MER91A DNA MER1_type 4 196 0 942 91 16 0 chr4 86156020 86156141 -116172206 + AluSp SINE Alu 2 124 -189 441 347 23 23 chr4 86156624 86156840 -116171507 - MIR SINE MIR -33 229 14 1393 202 0 20 chr4 86158496 86158748 -116169599 - AluJo SINE Alu -65 247 1 470 288 135 50 chr4 86158828 86159286 -116169061 - L1ME LINE L1 -416 5754 5258 2305 93 7 0 chr4 86160233 86160524 -116167823 - AluSq SINE Alu -20 293 1 1489 286 38 41 chr4 86160776 86161054 -116167293 - L2 LINE L2 -861 2453 2176 1150 167 9 48 chr4 86161054 86161281 -116167066 + MER20 DNA MER1_type 1 218 -1 1489 286 38 41 chr4 86161281 86161606 -116166741 - L2 LINE L2 -1138 2176 1852 2244 105 3 0 chr4 86161753 86162049 -116166298 - AluSp SINE Alu -16 297 1 259 314 81 8 chr4 86163549 86163810 -116164537 + L1M4 LINE L1 3886 4165 -1981 526 322 77 28 chr4 86163817 86164205 -116164142 + L1M4 LINE L1 4214 4620 -1526 188 255 39 0 chr4 86164525 86164576 -116163771 - MER5A DNA MER1_type -50 139 87 3441 186 49 6 chr4 86164650 86165347 -116163000 - MER44D DNA MER2_type -5 600 2 1920 206 84 11 chr4 86165440 86165902 -116162445 + LTR44 LTR ERV1 24 519 0 1793 80 19 0 chr4 86165902 86166166 -116162181 + L1MA1 LINE L1 5945 6213 -89 422 221 38 15 chr4 86166362 86166374 -116161973 - L1MA10 LINE L1 -3 6331 6320 291 238 39 88 chr4 86166374 86166555 -116161792 - L1ME1 LINE L1 -9 6157 5986 231 125 0 0 chr4 86167217 86167257 -116161090 + (CA)n Simple_repeat Simple_repeat 2 41 0 772 234 57 0 chr4 86167969 86168196 -116160151 + Charlie4 DNA MER1_type 46 285 -1676 452 119 248 10 chr4 86168208 86168309 -116160038 + Charlie4 DNA MER1_type 1824 1948 -13 1403 169 21 4 chr4 86168817 86169059 -116159288 - AluJo SINE Alu -30 282 37 298 292 62 44 chr4 86169106 86169219 -116159128 + MIR SINE MIR 26 140 -122 2411 84 0 0 chr4 86169540 86169838 -116158509 + AluSx SINE Alu 1 298 -14 2201 118 51 28 chr4 86170829 86171185 -116157162 + THE1B LTR MaLR 1 364 0 2162 129 3 3 chr4 86171260 86171563 -116156784 + AluSq SINE Alu 1 303 -10 237 191 71 0 chr4 86171945 86172029 -116156318 + L1MC4 LINE L1 6614 6703 -1339 309 315 0 0 chr4 86172037 86172126 -116156221 - L1MC4 LINE L1 -1339 6703 6615 * 353 289 0 0 chr4 86172083 86172173 -116156174 + L1MC4 LINE L1 6614 6703 -1339 335 303 0 0 chr4 86172205 86172294 -116156053 - L1MC4 LINE L1 -1339 6703 6615 * 376 204 0 43 chr4 86172216 86172309 -116156038 + L1MC4 LINE L1 6615 6703 -1339 229 182 0 30 chr4 86172323 86172389 -116155958 + L1MC4 LINE L1 6640 6703 -1339 25 0 0 0 chr4 86172595 86172620 -116155727 + AT_rich Low_complexity Low_complexity 1 25 0 1567 204 43 49 chr4 86173083 86173553 -116154794 + MLT1C LTR MaLR 1 467 0 770 192 12 0 chr4 86173738 86173905 -116154442 - MER53 DNA DNA -20 169 1 24 32 0 0 chr4 86174308 86174339 -116154008 + AT_rich Low_complexity Low_complexity 1 31 0 194 299 26 26 chr4 86174407 86174484 -116153863 + MIR3 SINE MIR 110 186 -22 228 135 0 0 chr4 86174767 86174804 -116153543 + (CA)n Simple_repeat Simple_repeat 2 38 0 577 278 184 8 chr4 86174813 86175194 -116153153 + L1ME4a LINE L1 5378 5825 -296 4688 101 7 1 chr4 86175197 86175903 -116152444 + L1PA13 LINE L1 5434 6143 -20 261 249 188 45 chr4 86175910 86176155 -116152192 + L1ME4a LINE L1 5813 6092 -29 415 299 131 20 chr4 86176791 86177089 -116151258 - LTR16A LTR ERVL -104 346 16 2441 61 27 0 chr4 86177296 86177591 -116150756 + AluY SINE Alu 1 303 -8 680 277 81 7 chr4 86177610 86177881 -116150466 + ERVL LTR ERVL 5090 5380 -384 234 183 70 42 chr4 86179031 86179102 -116149245 + AluJ/FRAM SINE Alu 230 302 0 844 308 50 11 chr4 86179134 86179491 -116148856 - MLT1L LTR MaLR -39 576 206 21 82 0 0 chr4 86180053 86180102 -116148245 + AT_rich Low_complexity Low_complexity 1 49 0 351 316 88 12 chr4 86180114 86180285 -116148062 - MIR SINE MIR -48 214 31 251 219 0 47 chr4 86180381 86180445 -116147902 + MIR SINE MIR 87 147 -115 227 258 134 21 chr4 86180601 86180698 -116147649 - L2 LINE L2 0 3313 3206 1772 174 3 10 chr4 86181914 86182213 -116146134 + AluJo SINE Alu 1 297 -15 22 80 0 0 chr4 86182216 86182266 -116146081 + AT_rich Low_complexity Low_complexity 1 50 0 410 223 171 42 chr4 86183291 86183484 -116144863 - MIR SINE MIR -20 242 25 25 0 0 0 chr4 86183872 86183897 -116144450 + AT_rich Low_complexity Low_complexity 1 25 0 308 288 68 98 chr4 86183996 86184255 -116144092 + L1ME3A LINE L1 4 248 -5871 1735 149 176 16 chr4 86184255 86184624 -116143723 + MSTA LTR MaLR 1 428 0 308 288 68 98 chr4 86184624 86184760 -116143587 + L1ME3A LINE L1 248 387 -5732 788 251 118 51 chr4 86184888 86185619 -116142728 + L1ME3A LINE L1 561 1358 -4862 1136 175 65 4 chr4 86185897 86186143 -116142204 + MLT1C LTR MaLR 1 261 -206 1835 285 112 46 chr4 86186143 86186504 -116141843 + L1ME3A LINE L1 3613 3949 -2180 3986 82 6 4 chr4 86186504 86187053 -116141294 + L1PA10 LINE L1 5616 6165 -3 1835 285 112 46 chr4 86187053 86187106 -116141241 + L1ME3A LINE L1 3949 3997 -2132 2193 125 7 0 chr4 86187106 86187409 -116140938 + AluSx SINE Alu 1 305 -7 1835 285 112 46 chr4 86187409 86187879 -116140468 + L1ME3A LINE L1 3997 4434 -1695 2388 84 7 0 chr4 86187879 86188176 -116140171 + AluSg SINE Alu 1 299 -11 1835 285 112 46 chr4 86188176 86188531 -116139816 + L1ME3A LINE L1 4434 4764 -1365 600 252 0 0 chr4 86188531 86188673 -116139674 + FLAM_A SINE Alu 1 142 0 1835 285 112 46 chr4 86188673 86189086 -116139261 + L1ME3A LINE L1 4764 5380 -749 335 368 80 5 chr4 86189089 86189301 -116139046 + L1ME3A LINE L1 5397 5624 -2167 1362 207 4 0 chr4 86189522 86189759 -116138588 + AluJb SINE Alu 2 239 -73 611 157 29 29 chr4 86189777 86189949 -116138398 + GA-rich Low_complexity Low_complexity 1 172 0 857 169 6 0 chr4 86189967 86190129 -116138218 + GA-rich Low_complexity Low_complexity 1 166 -12 1492 137 22 114 chr4 86190129 86190444 -116137903 + AluJo SINE Alu 10 295 -17 857 169 6 0 chr4 86190444 86190458 -116137889 + GA-rich Low_complexity Low_complexity 166 178 0 252 270 150 7 chr4 86190488 86190668 -116137679 + L1ME3A LINE L1 5713 5934 -211 523 289 139 30 chr4 86191011 86191350 -116136997 - MLT1L LTR MaLR -91 524 149 857 204 74 0 chr4 86191351 86191527 -116136820 + MER5A DNA MER1_type 1 189 0 601 271 7 7 chr4 86192395 86192550 -116135797 + MIR SINE MIR 53 207 -55 359 205 84 33 chr4 86192851 86193028 -116135319 + L1MC4a LINE L1 5692 5877 -244 1069 210 162 57 chr4 86193304 86193638 -116134709 - MLT1F LTR MaLR -69 473 105 2010 130 0 0 chr4 86193842 86194163 -116134184 + AluSx SINE Alu 1 321 0 620 232 113 0 chr4 86194578 86194755 -116133592 + L2 LINE L2 2394 2590 -724 468 207 158 12 chr4 86195119 86195283 -116133064 + MLT1L LTR MaLR 418 605 -10 429 295 139 38 chr4 86195667 86196013 -116132334 + MLT1J2 LTR MaLR 70 450 0 3835 103 2 19 chr4 86197101 86197636 -116130711 + MER1A DNA MER1_type 2 527 0 491 282 0 15 chr4 86197781 86197912 -116130435 - MIR SINE MIR -71 191 63 510 17 0 0 chr4 86198101 86198160 -116130187 + (TG)n Simple_repeat Simple_repeat 1 59 0 348 272 173 16 chr4 86198966 86199157 -116129190 + MIR SINE MIR 28 248 -14 318 197 289 39 chr4 86199930 86200091 -116128256 - Charlie2 DNA MER1_type -57 2805 2685 2327 97 0 10 chr4 86200091 86200227 -116128120 + AluSx SINE Alu 1 137 -175 2169 117 7 0 chr4 86200227 86200518 -116127829 + AluSg SINE Alu 1 293 -17 2327 97 0 10 chr4 86200518 86200690 -116127657 + AluSx SINE Alu 137 306 -6 318 197 289 39 chr4 86200690 86200736 -116127611 - Charlie2 DNA MER1_type -176 2686 2546 319 213 23 19 chr4 86200736 86200843 -116127504 - LTR33A LTR ERVL 0 523 444 333 158 40 0 chr4 86200853 86200929 -116127418 + L1MB8 LINE L1 5928 6006 -172 773 203 7 0 chr4 86200988 86201136 -116127211 + MER58B DNA MER1_type 183 331 -10 3265 31 0 0 chr4 86201139 86201522 -116126825 + L1PA3 LINE L1 5770 6152 -3 2165 135 0 3 chr4 86201560 86201863 -116126484 + AluSx SINE Alu 1 302 -10 602 287 45 20 chr4 86201878 86202122 -116126225 - Charlie2b DNA MER1_type -1863 919 670 823 126 11 89 chr4 86202122 86202312 -116126035 + Charlie2b DNA MER1_type 2608 2782 0 451 319 88 42 chr4 86202530 86202768 -116125579 - MIR SINE MIR -6 256 8 21 36 0 0 chr4 86202899 86202927 -116125420 + AT_rich Low_complexity Low_complexity 1 28 0 1845 173 7 0 chr4 86202928 86203212 -116125135 - AluJb SINE Alu -26 286 1 804 152 8 8 chr4 86203219 86203344 -116125003 - FLAM_C SINE Alu -17 126 2 290 233 133 53 chr4 86203488 86203638 -116124709 - MIR3 SINE MIR -6 202 41 378 247 31 31 chr4 86203934 86204019 -116124328 - MER5A DNA MER1_type -84 105 18 1556 132 4 40 chr4 86204019 86204269 -116124078 - AluJb SINE Alu -1 311 71 378 247 31 31 chr4 86204269 86204280 -116124067 - MER5A DNA MER1_type -170 19 9 25 51 0 0 chr4 86204484 86204523 -116123824 + AT_rich Low_complexity Low_complexity 1 39 0 440 277 188 41 chr4 86205166 86205559 -116122788 + MLT1H LTR MaLR 99 549 0 333 303 8 53 chr4 86206202 86206334 -116122013 - MIR3 SINE MIR -40 168 43 1903 178 0 0 chr4 86206354 86206640 -116121707 + AluJo SINE Alu 1 286 -26 360 211 68 58 chr4 86206697 86206743 -116121604 - L1M4 LINE L1 -2916 3230 3186 2097 114 0 32 chr4 86206743 86207051 -116121296 - AluSc SINE Alu -9 300 3 360 211 68 58 chr4 86207051 86207138 -116121209 - L1M4 LINE L1 -2960 3186 3092 2151 127 0 13 chr4 86207138 86207445 -116120902 - AluSx SINE Alu -9 303 1 360 211 68 58 chr4 86207445 86207500 -116120847 - L1M4 LINE L1 -3054 3092 3039 1942 186 29 37 chr4 86207510 86207994 -116120353 - L1MB8 LINE L1 -6 6670 6191 2496 7 80 0 chr4 86208001 86208289 -116120058 + AluY SINE Alu 1 311 0 4049 147 32 0 chr4 86208290 86209216 -116119131 + L1MA5 LINE L1 4618 5563 -737 303 234 11 32 chr4 86209190 86209284 -116119063 + L1MA5 LINE L1 5836 5927 -373 * 25 0 0 0 chr4 86209289 86209314 -116119033 + AT_rich Low_complexity Low_complexity 1 25 0 2269 110 11 13 chr4 86209336 86209708 -116118639 + L1MA5 LINE L1 5928 6298 -2 4743 183 50 12 chr4 86209716 86211131 -116117216 - L1MB8 LINE L1 -489 6193 4730 2846 223 39 14 chr4 86211195 86212303 -116116044 - L1MB8 LINE L1 -3136 3508 2371 2162 125 0 0 chr4 86212319 86212607 -116115740 - AluSx SINE Alu -24 288 1 324 307 36 6 chr4 86212701 86212867 -116115480 - L1MB8 LINE L1 -4480 2166 1996 1758 174 70 25 chr4 86212869 86213225 -116115122 - MLT1A2 LTR MaLR -2 372 1 2033 161 11 23 chr4 86213225 86213368 -116114979 - MLT1A2-int LTR MaLR 0 1735 1592 2220 130 7 0 chr4 86213368 86213675 -116114672 + AluJb SINE Alu 1 309 -3 2033 161 11 23 chr4 86213675 86213885 -116114462 - MLT1A2-int LTR MaLR -143 1592 1386 3720 210 100 40 chr4 86213887 86213928 -116114419 - L1MB8 LINE L1 -5477 1065 1028 2295 103 3 7 chr4 86213928 86214238 -116114109 + AluSx SINE Alu 1 309 -3 3720 210 100 40 chr4 86214238 86215003 -116113344 - L1MB8 LINE L1 -5514 1028 185 4953 59 32 0 chr4 86215003 86215595 -116112752 + L1PA5 LINE L1 5540 6150 -4 3720 210 100 40 chr4 86215595 86215789 -116112558 - L1MB8 LINE L1 -6357 185 4 279 0 0 0 chr4 86216569 86216600 -116111747 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 932 121 0 0 chr4 86216602 86216718 -116111629 - FLAM_C SINE Alu -17 116 1 520 273 45 0 chr4 86217136 86217270 -116111077 + FLAM_A SINE Alu 1 139 0 280 288 8 42 chr4 86217286 86217404 -116110943 - MER103 DNA DNA -21 145 32 252 127 109 18 chr4 86218297 86218352 -116109995 + L1ME LINE L1 5757 5816 -305 268 354 30 10 chr4 86218354 86218453 -116109894 - L2 LINE L2 -38 3234 3134 1724 118 11 33 chr4 86218591 86218862 -116109485 + AluSg SINE Alu 1 265 -45 27 29 0 0 chr4 86219161 86219195 -116109152 + AT_rich Low_complexity Low_complexity 1 34 0 912 139 0 15 chr4 86219232 86219369 -116108978 + AluJ SINE Alu 1 135 -177 2125 135 3 3 chr4 86219369 86219680 -116108667 + AluSx SINE Alu 1 311 -1 207 230 86 84 chr4 86219783 86219962 -116108385 - MIR SINE MIR -19 243 7 316 194 115 99 chr4 86220254 86220445 -116107902 + L1M4 LINE L1 4407 4600 -1546 188 188 14 0 chr4 86220500 86220569 -116107778 + (TA)n Simple_repeat Simple_repeat 2 71 0 857 179 32 19 chr4 86220615 86220771 -116107576 + AluJ SINE Alu 137 294 -8 16777 120 14 99 chr4 86220830 86224207 -116104140 + L1PA7 LINE L1 12 3101 -3045 17236 82 8 0 chr4 86226415 86229449 -116098898 + L1PA7 LINE L1 3072 6151 -3 326 301 80 40 chr4 86229449 86229648 -116098699 + L1M4 LINE L1 4918 5124 -1022 2214 119 3 0 chr4 86229767 86230078 -116098269 + AluSq SINE Alu 1 312 -1 1906 164 3 0 chr4 86230083 86230382 -116097965 + AluJb SINE Alu 1 300 -12 963 180 0 0 chr4 86230382 86230543 -116097804 + AluJo/FRAM SINE Alu 134 294 -18 1972 157 0 3 chr4 86230663 86230962 -116097385 - AluJb SINE Alu -14 298 1 22 0 0 0 chr4 86230987 86231009 -116097338 + AT_rich Low_complexity Low_complexity 1 22 0 2031 148 3 0 chr4 86231218 86231516 -116096831 + AluSx SINE Alu 4 302 -10 200 260 0 20 chr4 86231753 86231803 -116096544 + GA-rich Low_complexity Low_complexity 1 49 0 1814 142 73 0 chr4 86233054 86233328 -116095019 + AluSx SINE Alu 4 297 -15 230 341 72 14 chr4 86233436 86233574 -116094773 - MIR SINE MIR -112 150 5 197 376 90 44 chr4 86233665 86234077 -116094270 + L2 LINE L2 2842 3272 0 505 325 144 58 chr4 86235043 86235414 -116092933 - L2 LINE L2 -351 2963 2626 2401 84 3 0 chr4 86235414 86235710 -116092637 - AluSp SINE Alu -16 297 1 505 325 144 58 chr4 86235710 86236660 -116091687 - L2 LINE L2 -688 2626 1527 709 314 163 27 chr4 86236804 86236947 -116091400 + L2 LINE L2 2238 2360 -912 2354 126 20 6 chr4 86236947 86237289 -116091058 + MER7A DNA MER2_type 1 345 -1 709 314 163 27 chr4 86237289 86238048 -116090299 + L2 LINE L2 2360 3264 -8 371 296 104 0 chr4 86238373 86238508 -116089839 - MIR3 SINE MIR -10 198 50 289 87 0 22 chr4 86239240 86239286 -116089061 + LTR7 LTR ERV1 60 104 -346 2478 59 0 3 chr4 86239287 86239590 -116088757 + AluY SINE Alu 1 302 -9 1710 156 29 7 chr4 86240314 86240615 -116087732 + AluJb SINE Alu 1 307 0 624 214 196 83 chr4 86241107 86241505 -116086842 - L1MC5 LINE L1 -435 7526 7084 572 229 254 24 chr4 86241536 86241824 -116086523 + L2 LINE L2 2255 2608 -706 2277 83 10 0 chr4 86241847 86242137 -116086210 - AluSc SINE Alu -14 295 3 1725 173 3 19 chr4 86242695 86243002 -116085345 - AluJo SINE Alu -6 306 5 352 176 0 0 chr4 86243460 86243534 -116084813 + Charlie7 DNA MER1_type 74 147 -2465 22 106 0 0 chr4 86243962 86244047 -116084300 + AT_rich Low_complexity Low_complexity 1 85 0 44119 48 1 2 chr4 86244973 86251124 -116077223 - L1PA5 LINE L1 0 6154 11 317 207 0 12 chr4 86251183 86251265 -116077082 + L1MC4a LINE L1 5806 5886 -1922 1870 175 0 44 chr4 86251285 86251605 -116076742 + AluSx SINE Alu 1 306 -6 1265 81 11 6 chr4 86251920 86252094 -116076253 - AluY SINE Alu -2 309 135 1729 128 4 4 chr4 86252134 86252400 -116075947 + L1MB3 LINE L1 5872 6137 -46 1634 162 0 43 chr4 86252881 86253183 -116075164 + AluJb SINE Alu 1 289 -23 24 77 0 0 chr4 86253183 86253235 -116075112 + AT_rich Low_complexity Low_complexity 1 52 0 1876 208 28 108 chr4 86253253 86253956 -116074391 + L1MC4a LINE L1 6613 7224 -632 863 191 28 19 chr4 86254092 86254307 -116074040 + L1MC5 LINE L1 7301 7517 -444 20573 116 35 33 chr4 86254327 86254476 -116073871 - L1 LINE L1 -3650 3915 3768 2172 112 0 26 chr4 86254476 86254780 -116073567 + AluSc SINE Alu 1 296 -13 2495 77 0 0 chr4 86254781 86255078 -116073269 + AluY SINE Alu 2 298 -13 20573 116 35 33 chr4 86255078 86255299 -116073048 - L1 LINE L1 -3797 3768 3549 1936 145 6 25 chr4 86255299 86255617 -116072730 - AluSx SINE Alu 0 312 1 20573 116 35 33 chr4 86255617 86256709 -116071638 - L1 LINE L1 -4016 3549 2460 2349 102 7 0 chr4 86256709 86257013 -116071334 - AluSx SINE Alu -6 306 1 20573 116 35 33 chr4 86257013 86257173 -116071174 - L1 LINE L1 -5105 2460 2302 2369 84 0 3 chr4 86257173 86257471 -116070876 + AluY SINE Alu 1 297 -14 20573 116 35 33 chr4 86257471 86259283 -116069064 - L1 LINE L1 -5263 2302 476 5618 157 19 13 chr4 86259280 86260182 -116068165 + L1PB3 LINE L1 4560 5456 -698 * 213 39 0 0 chr4 86260182 86260208 -116068139 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 5618 157 19 13 chr4 86260208 86260727 -116067620 + L1PB3 LINE L1 5456 5988 -166 2179 117 10 0 chr4 86260727 86261034 -116067313 + AluSx SINE Alu 1 310 -2 5618 157 19 13 chr4 86261034 86261201 -116067146 + L1PB3 LINE L1 5988 6153 -1 1519 197 20 17 chr4 86261219 86261519 -116066828 + L1MCa LINE L1 4 304 -6122 1171 106 48 0 chr4 86261553 86261761 -116066586 + L1MCa LINE L1 1246 1463 -4963 436 125 14 0 chr4 86261832 86261904 -116066443 - MSTD LTR MaLR 0 396 324 328 122 0 0 chr4 86261947 86261996 -116066351 - MSTD LTR MaLR -347 49 1 2912 196 49 20 chr4 86262026 86262075 -116066272 + L1MCa LINE L1 1886 1932 -4494 2342 84 14 0 chr4 86262075 86262371 -116065976 - AluY SINE Alu -11 300 1 2912 196 49 20 chr4 86262371 86262433 -116065914 + L1MCa LINE L1 1932 1991 -4435 2372 139 11 11 chr4 86262433 86262799 -116065548 + MER47A DNA MER2_type 1 366 0 2912 196 49 20 chr4 86262799 86262985 -116065362 + L1MCa LINE L1 1991 2170 -4256 2080 107 27 0 chr4 86262985 86263285 -116065062 - AluSx SINE Alu -4 308 1 2912 196 49 20 chr4 86263285 86264329 -116064018 + L1MCa LINE L1 2170 3270 -3156 2575 83 14 3 chr4 86264330 86264681 -116063666 + THE1A LTR MaLR 1 355 0 12044 87 2 4 chr4 86264681 86266264 -116062083 + THE1A-int LTR MaLR 1 1580 0 614 14 0 0 chr4 86266264 86266336 -116062011 + THE1A LTR MaLR 1 72 -283 402 94 0 0 chr4 86266340 86266404 -116061943 + Alu SINE Alu 249 312 0 5371 135 48 41 chr4 86266424 86266527 -116061820 + L1MC1 LINE L1 5254 5355 -978 243 0 0 0 chr4 86266527 86266554 -116061793 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5371 135 48 41 chr4 86266554 86267518 -116060829 + L1MC1 LINE L1 5355 6328 -5 21 36 0 0 chr4 86268069 86268097 -116060250 + AT_rich Low_complexity Low_complexity 1 28 0 1605 188 3 32 chr4 86268119 86268401 -116059946 + AluJb SINE Alu 1 274 -38 2246 108 13 0 chr4 86268407 86268713 -116059634 + AluY SINE Alu 1 310 -1 962 194 0 6 chr4 86268849 86269014 -116059333 + FAM SINE Alu 1 164 -11 1122 184 225 0 chr4 86269026 86269270 -116059077 - AluJo SINE Alu -13 299 1 1122 213 48 33 chr4 86269283 86269682 -116058665 + L1MC5 LINE L1 7505 7909 -52 794 174 165 5 chr4 86269867 86270085 -116058262 - L1ME1 LINE L1 -12 6154 5902 379 277 55 50 chr4 86270144 86270346 -116058001 + L2 LINE L2 2584 2786 -528 352 271 136 3 chr4 86270454 86270570 -116057777 - L1ME1 LINE L1 -524 5640 5507 2084 139 0 3 chr4 86270570 86270871 -116057476 - AluSx SINE Alu -12 300 1 352 271 136 3 chr4 86270871 86270888 -116057459 - L1ME1 LINE L1 -657 5507 5494 26 0 0 0 chr4 86270912 86270938 -116057409 + AT_rich Low_complexity Low_complexity 1 26 0 420 327 66 41 chr4 86270976 86271305 -116057042 - L1ME1 LINE L1 -988 5158 4806 1834 114 4 8 chr4 86271305 86271569 -116056778 - AluSq SINE Alu -30 283 21 420 327 66 41 chr4 86271569 86271844 -116056503 - L1ME1 LINE L1 -1340 4806 4539 362 346 38 0 chr4 86271845 86272004 -116056343 - L1ME1 LINE L1 -1612 4534 4370 2300 98 0 35 chr4 86272077 86272395 -116055952 - AluSx SINE Alu -5 307 1 1682 183 10 27 chr4 86272523 86272823 -116055524 + AluJo SINE Alu 1 295 -17 2397 73 0 0 chr4 86272826 86273113 -116055234 + AluY SINE Alu 1 287 -24 33 56 0 0 chr4 86273113 86273167 -116055180 + AT_rich Low_complexity Low_complexity 1 54 0 2318 88 0 0 chr4 86273169 86273464 -116054883 + AluY SINE Alu 1 295 -16 5228 53 0 11 chr4 86273486 86274142 -116054205 + L1PA5 LINE L1 5505 6153 -1 1066 156 28 38 chr4 86274153 86274365 -116053982 - MER2 DNA MER2_type -135 210 1 3153 150 52 49 chr4 86274507 86275195 -116053152 - L1MB5 LINE L1 -1 6173 5484 207 0 0 0 chr4 86275201 86275224 -116053123 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 392 291 13 0 chr4 86275388 86275546 -116052801 - L1MEd LINE L1 -5947 172 13 2118 150 21 0 chr4 86275572 86275912 -116052435 - MER7A DNA MER2_type -1 345 1 1107 270 171 48 chr4 86276121 86276300 -116052047 + HAL1 LINE L1 280 436 -2071 2330 95 0 16 chr4 86276300 86276615 -116051732 + AluSg SINE Alu 1 310 0 1107 270 171 48 chr4 86276615 86277376 -116050971 + HAL1 LINE L1 436 1336 -1171 1205 284 59 26 chr4 86277379 86277767 -116050580 + HAL1 LINE L1 1369 1780 -727 2343 97 3 7 chr4 86277767 86278077 -116050270 + AluSx SINE Alu 1 309 -3 1205 284 59 26 chr4 86278077 86278217 -116050130 + HAL1 LINE L1 1780 1914 -593 375 96 0 0 chr4 86278410 86278462 -116049885 + MER66A LTR ERV1 287 338 -140 286 132 26 0 chr4 86278496 86278572 -116049775 + (TA)n Simple_repeat Simple_repeat 1 78 0 313 227 178 74 chr4 86278660 86278823 -116049524 + HAL1 LINE L1 2191 2370 -137 436 179 0 95 chr4 86278838 86278891 -116049456 - L2 LINE L2 -7 3306 3264 1049 165 105 10 chr4 86278891 86279091 -116049256 - MER20 DNA MER1_type 0 219 1 436 179 0 95 chr4 86279091 86279132 -116049215 - L2 LINE L2 -49 3264 3221 609 229 98 56 chr4 86279340 86279545 -116048802 + MIR SINE MIR 38 249 -13 2296 99 0 0 chr4 86279913 86280205 -116048142 - AluSx SINE Alu -20 292 1 1941 136 21 0 chr4 86280206 86280485 -116047862 - AluSx SINE Alu -6 306 22 1646 158 17 27 chr4 86280658 86280955 -116047392 + AluJb SINE Alu 1 294 -18 5152 83 1 34 chr4 86281063 86281774 -116046573 - LTR12 LTR ERV1 0 688 1 4229 105 2 2 chr4 86281774 86282385 -116045962 - HERV9 LTR ERV1 0 8399 7789 376 129 0 0 chr4 86282381 86282443 -116045904 - HERV9 LTR ERV1 -835 7564 7503 * 553 137 67 50 chr4 86282441 86282902 -116045445 - HERV17 LTR ERV1 -5755 1141 704 1330 90 5 0 chr4 86282903 86283091 -116045256 - HERV17 LTR ERV1 -3455 4944 4756 * 18972 108 12 11 chr4 86283090 86286002 -116042345 - HERV17 LTR ERV1 -5427 2972 58 5201 76 139 0 chr4 86286026 86286751 -116041596 - LTR12 LTR ERV1 0 826 1 706 244 109 15 chr4 86286779 86286980 -116041367 - L2 LINE L2 0 3313 3094 299 153 51 0 chr4 86287050 86287109 -116041238 - MIR SINE MIR -128 134 73 309 247 65 0 chr4 86287639 86287716 -116040631 + MIR SINE MIR 94 175 -87 206 222 111 0 chr4 86288508 86288580 -116039767 + MIR SINE MIR 183 262 0 * 309 253 188 0 chr4 86288562 86288658 -116039689 - MIR SINE MIR -62 146 58 248 260 0 55 chr4 86288966 86289039 -116039308 - MIR3 SINE MIR -35 173 105 2269 92 3 20 chr4 86289441 86289747 -116038600 + AluSx SINE Alu 1 301 -11 561 234 164 0 chr4 86290035 86290206 -116038141 - MIR SINE MIR 0 262 64 300 308 160 31 chr4 86290259 86290616 -116037731 + L2 LINE L2 2108 2510 -804 350 283 94 0 chr4 86290902 86291008 -116037339 - MER5A DNA MER1_type -3 186 71 347 238 163 41 chr4 86291005 86291177 -116037170 - MIR SINE MIR -10 252 60 * 1980 109 10 43 chr4 86291420 86291722 -116036625 - AluSq SINE Alu -21 292 1 22 0 0 0 chr4 86292751 86292773 -116035574 + AT_rich Low_complexity Low_complexity 1 22 0 286 115 0 19 chr4 86293685 86293737 -116034610 + MER97a DNA MER1_type? 43 93 -801 2420 94 0 0 chr4 86294037 86294345 -116034002 + AluSx SINE Alu 1 308 -4 1744 133 10 48 chr4 86294669 86294806 -116033541 + AluJb SINE Alu 1 142 -170 2210 114 13 3 chr4 86294806 86295114 -116033233 + AluSx SINE Alu 1 311 -1 2158 124 13 0 chr4 86295121 86295419 -116032928 + AluSg SINE Alu 1 302 -8 234 0 0 0 chr4 86295420 86295446 -116032901 + (TA)n Simple_repeat Simple_repeat 1 26 0 1744 133 10 48 chr4 86295446 86295591 -116032756 + AluJb SINE Alu 147 282 -30 1861 99 0 0 chr4 86296650 86296892 -116031455 + AluSg/x SINE Alu 69 310 0 973 256 161 35 chr4 86296956 86297557 -116030790 + HAL1 LINE L1 253 929 -1578 1951 104 11 0 chr4 86297657 86297937 -116030410 + AluSx SINE Alu 1 283 -29 485 160 240 0 chr4 86298009 86298109 -116030238 + FLAM_C SINE Alu 1 124 -19 260 268 158 21 chr4 86298139 86298329 -116030018 + HAL1 LINE L1 1207 1422 -1085 1859 119 24 24 chr4 86298413 86298707 -116029640 + AluSq SINE Alu 12 305 -8 2228 111 0 0 chr4 86298712 86299009 -116029338 + AluSc SINE Alu 1 297 -12 400 266 318 12 chr4 86299020 86299272 -116029075 + HAL1 LINE L1 1578 1906 -601 1580 152 54 18 chr4 86299681 86299958 -116028389 + AluJo SINE Alu 1 287 -25 707 169 125 6 chr4 86300056 86300216 -116028131 - MER58A DNA MER1_type 0 224 46 24 32 0 0 chr4 86302098 86302129 -116026218 + AT_rich Low_complexity Low_complexity 1 31 0 264 286 42 54 chr4 86305246 86305414 -116022933 - Charlie8 DNA MER1_type -2152 265 100 694 163 7 43 chr4 86305558 86305699 -116022648 - AluY SINE Alu -175 136 1 199 328 45 0 chr4 86305858 86305925 -116022422 + L2 LINE L2 3182 3251 -21 207 0 0 0 chr4 86307921 86307944 -116020403 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1838 148 20 3 chr4 86310044 86310349 -116017998 - AluSx SINE Alu -2 310 1 234 191 0 0 chr4 86310472 86310519 -116017828 + (TA)n Simple_repeat Simple_repeat 2 48 0 2050 104 31 14 chr4 86310532 86310819 -116017528 - AluSg SINE Alu -18 292 1 353 289 116 56 chr4 86311382 86311437 -116016910 + MIR SINE MIR 17 67 -195 1513 172 39 4 chr4 86311437 86311716 -116016631 - AluJb SINE Alu -23 289 1 353 289 116 56 chr4 86311716 86311892 -116016455 + MIR SINE MIR 67 262 0 671 150 92 8 chr4 86312510 86312630 -116015717 - FLAM_C SINE Alu -3 130 1 1556 178 20 34 chr4 86313067 86313359 -116014988 - AluJb SINE Alu -24 288 1 2168 106 0 0 chr4 86313711 86313993 -116014354 - AluSx SINE Alu -30 282 1 2136 123 20 0 chr4 86314017 86314310 -116014037 - AluSx SINE Alu -13 299 1 733 220 50 72 chr4 86314329 86314606 -116013741 - AluJo SINE Alu -30 282 12 2276 101 3 0 chr4 86317310 86317606 -116010741 + AluSp SINE Alu 1 297 -16 216 0 0 0 chr4 86318431 86318455 -116009892 + (CA)n Simple_repeat Simple_repeat 2 25 0 238 316 0 23 chr4 86320930 86321063 -116007284 + C-rich Low_complexity Low_complexity 5 134 0 187 130 22 22 chr4 86321065 86321111 -116007236 + (CCG)n Simple_repeat Simple_repeat 1 46 0 2507 53 0 7 chr4 86322691 86322994 -116005353 + AluSg SINE Alu 1 301 -9 1214 186 132 0 chr4 86323685 86323943 -116004404 + AluJo SINE Alu 4 295 -7 500 147 0 0 chr4 86324307 86324382 -116003965 + AluJ/FLAM SINE Alu 2 76 -236 2243 61 51 10 chr4 86324383 86324677 -116003670 - AluYa5 SINE Alu -5 306 1 883 210 26 0 chr4 86324682 86324877 -116003470 - L1M4 LINE L1 -1194 4952 4753 475 171 0 0 chr4 86324878 86324960 -116003387 + L1 LINE L1 4027 4108 -2038 424 156 0 0 chr4 86324976 86325040 -116003307 - L1M4 LINE L1 -2333 3813 3750 235 185 67 14 chr4 86325140 86325242 -116003105 - HsTC2 DNA Tc2 -68 1830 3 2396 57 7 10 chr4 86325255 86325556 -116002791 - AluY SINE Alu -11 300 1 2477 63 0 0 chr4 86325566 86325865 -116002482 - AluY SINE Alu -12 299 1 2069 119 10 0 chr4 86326435 86326730 -116001617 - AluSx SINE Alu -14 298 1 1746 202 68 0 chr4 86326774 86327140 -116001207 + LTR65 LTR ERV1 1 391 -278 1822 116 126 0 chr4 86327142 86327419 -116000928 + AluSq SINE Alu 1 312 -1 671 175 57 79 chr4 86327605 86327670 -116000677 - MLT1B LTR MaLR -217 173 108 2294 100 0 23 chr4 86327670 86327842 -116000505 - AluSx SINE Alu -9 303 129 210 37 0 0 chr4 86327842 86327869 -116000478 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2382 53 3 0 chr4 86327869 86328151 -116000196 - AluY SINE Alu -28 283 1 2294 100 0 23 chr4 86328151 86328287 -116000060 - AluSx SINE Alu -181 131 1 671 175 57 79 chr4 86328287 86328398 -115999949 - MLT1B LTR MaLR -282 108 1 2123 226 27 112 chr4 86328398 86328634 -115999713 - L1 LINE L1 -2166 3980 3725 2158 126 3 3 chr4 86328634 86328935 -115999412 - AluSx SINE Alu -9 303 3 2123 226 27 112 chr4 86328935 86329256 -115999091 - L1 LINE L1 -2421 3725 3488 338 105 0 35 chr4 86329256 86329313 -115999034 - Alu SINE Alu 0 302 248 2123 226 27 112 chr4 86329313 86329731 -115998616 - L1 LINE L1 -2658 3488 3036 1243 150 0 10 chr4 86329733 86329963 -115998384 - AluJb SINE Alu 0 316 89 2768 142 22 2 chr4 86330123 86330574 -115997773 + L1MA6 LINE L1 5835 6294 -6 838 276 42 87 chr4 86330643 86331125 -115997222 + LTR67 LTR ERVL 47 506 -51 2465 252 46 52 chr4 86331198 86331239 -115997108 + L1M4 LINE L1 16 56 -6486 4964 67 58 5 chr4 86331239 86331892 -115996455 - LTR12 LTR ERV1 0 688 1 2465 252 46 52 chr4 86331892 86332002 -115996345 + L1M4 LINE L1 56 165 -6377 1572 152 9 82 chr4 86332002 86332145 -115996202 + AluJo SINE Alu 1 110 -202 2256 86 0 0 chr4 86332145 86332437 -115995910 + AluY SINE Alu 1 292 -19 1572 152 9 82 chr4 86332437 86332608 -115995739 + AluJo SINE Alu 110 292 -20 2465 252 46 52 chr4 86332608 86333287 -115995060 + L1M4 LINE L1 165 842 -5700 1815 235 58 11 chr4 86333284 86333815 -115994532 + L1M4 LINE L1 2973 3528 -3116 * 1096 102 0 0 chr4 86333828 86333965 -115994382 - AluSg/x SINE Alu -19 291 155 1694 126 78 0 chr4 86334075 86334330 -115994017 - AluSx SINE Alu -37 275 1 1956 118 14 3 chr4 86334331 86334620 -115993727 - L1M2 LINE L1 -508 5783 5492 332 151 0 0 chr4 86334625 86334678 -115993669 - Alu SINE Alu 0 301 249 465 217 72 28 chr4 86334746 86334926 -115993421 - L1MC5 LINE L1 -443 7518 7331 286 226 155 0 chr4 86335036 86335120 -115993227 - L1MEd LINE L1 -4893 1226 1130 2328 96 13 7 chr4 86335122 86335425 -115992922 - AluSx SINE Alu -7 305 1 830 130 0 43 chr4 86336110 86336248 -115992099 + FLAM_C SINE Alu 2 133 0 1164 174 0 42 chr4 86336266 86336478 -115991869 + AluJb SINE Alu 87 289 -23 2150 92 10 20 chr4 86336888 86337194 -115991153 - AluSg SINE Alu -7 303 1 2146 108 0 40 chr4 86337356 86337679 -115990668 + AluSq SINE Alu 2 311 -2 21 0 0 0 chr4 86337964 86337985 -115990362 + AT_rich Low_complexity Low_complexity 1 21 0 380 128 35 84 chr4 86338176 86338266 -115990081 - AluJ/FRAM SINE Alu -21 281 218 1270 166 162 0 chr4 86338272 86338525 -115989822 - AluJo SINE Alu -18 294 1 1572 165 62 4 chr4 86338568 86338840 -115989507 - AluJb SINE Alu -24 288 1 21 0 0 0 chr4 86346020 86346041 -115982306 + GC_rich Low_complexity Low_complexity 1 21 0 1402 114 26 26 chr4 86348354 86348581 -115979766 - AluJb SINE Alu -12 300 74 1942 153 3 0 chr4 86348724 86349018 -115979329 + AluSx SINE Alu 2 296 -16 908 173 27 0 chr4 86349018 86349168 -115979179 + AluJo/FRAM SINE Alu 134 287 -25 596 206 0 24 chr4 86350077 86350203 -115978144 + FLAM_A SINE Alu 15 137 -5 859 233 56 14 chr4 86350207 86350494 -115977853 + L2 LINE L2 2261 2559 -755 802 296 146 4 chr4 86350569 86351135 -115977212 - L2 LINE L2 -52 3261 2624 2131 134 0 3 chr4 86351153 86351451 -115976896 - AluJb SINE Alu -15 297 1 2853 176 21 49 chr4 86351783 86352350 -115975997 - MER52A LTR ERV1 -1 1754 1204 1087 220 29 93 chr4 86352320 86352864 -115975483 - MER52A LTR ERV1 -141 495 274 * 236 132 0 0 chr4 86352865 86352903 -115975444 - MER52A LTR ERV1 -895 860 823 2206 142 0 0 chr4 86353551 86353861 -115974486 - AluSx SINE Alu -2 310 1 2224 124 0 0 chr4 86353878 86354185 -115974162 - AluSg SINE Alu -3 307 1 391 268 80 72 chr4 86354254 86354504 -115973843 + MLT1K LTR MaLR 334 585 -3 241 281 47 0 chr4 86354565 86354629 -115973718 + MLT2E LTR ERVL 32 98 -530 2062 168 25 3 chr4 86354635 86354992 -115973355 - MLT1A1 LTR MaLR 0 365 1 515 318 10 10 chr4 86355227 86355425 -115972922 + MLT2E LTR ERVL 408 605 -23 562 363 42 18 chr4 86355676 86355784 -115972563 + ERVL LTR ERVL 338 442 -5322 2365 92 3 3 chr4 86355784 86356088 -115972259 + AluSc SINE Alu 1 304 -5 562 363 42 18 chr4 86356088 86356310 -115972037 + ERVL LTR ERVL 442 676 -5088 2368 170 118 5 chr4 86356329 86356777 -115971570 + MLT1D LTR MaLR 1 499 -6 485 264 13 50 chr4 86356779 86356938 -115971409 + ERVL LTR ERVL 768 920 -4844 884 251 96 18 chr4 86357197 86357531 -115970816 - L2 LINE L2 -1630 1684 1325 3746 97 14 4 chr4 86357614 86358120 -115970227 - MER9 LTR ERVK 0 511 1 406 73 0 0 chr4 86358469 86358524 -115969823 - AluSc SINE Alu -13 296 242 2446 74 0 10 chr4 86358565 86358876 -115969471 - AluY SINE Alu -3 308 1 2244 108 7 0 chr4 86359020 86359327 -115969020 + AluSc SINE Alu 1 309 0 308 265 104 63 chr4 86359330 86359598 -115968749 - L1ME4a LINE L1 -56 6065 5787 2477 79 0 0 chr4 86360636 86360939 -115967408 + AluY SINE Alu 1 303 -8 6202 101 68 8 chr4 86360985 86361612 -115966735 + Charlie3 DNA MER1_type 1 698 -2008 1997 106 62 0 chr4 86361612 86361924 -115966423 - AluSg SINE Alu 0 310 1 6202 101 68 8 chr4 86361924 86362178 -115966169 + Charlie3 DNA MER1_type 698 935 -1771 2269 106 3 0 chr4 86362178 86362479 -115965868 - AluSp SINE Alu -11 302 1 4881 64 5 0 chr4 86362481 86363074 -115965273 + Charlie3 DNA MER1_type 1516 2111 -599 2005 122 0 0 chr4 86363074 86363337 -115965010 + AluSx SINE Alu 1 263 -49 308 53 0 0 chr4 86363337 86363375 -115964972 - L1ME4a LINE L1 -442 5736 5699 272 231 13 64 chr4 86363375 86363453 -115964894 + Charlie3 DNA MER1_type 1634 1707 -1003 * 308 245 75 0 chr4 86363450 86363544 -115964803 + MER21B LTR ERV1 9 109 -754 1786 52 0 0 chr4 86363634 86363845 -115964502 + Charlie3 DNA MER1_type 2251 2461 -249 275 31 0 0 chr4 86363840 86363872 -115964475 + Charlie3 DNA MER1_type 2675 2706 -4 * 521 179 11 0 chr4 86364148 86364243 -115964104 - FLAM_A SINE Alu -19 123 28 186 0 40 0 chr4 86364290 86364315 -115964032 + (TTTTA)n Simple_repeat Simple_repeat 2 165 0 1369 223 36 4 chr4 86364315 86364589 -115963758 - AluJb SINE Alu -1 307 1 336 164 0 0 chr4 86364785 86364852 -115963495 + CT-rich Low_complexity Low_complexity 1 67 0 363 249 28 2 chr4 86364855 86364935 -115963412 - AluJ/FRAM SINE Alu -20 282 218 419 180 0 0 chr4 86365035 86365124 -115963223 + L1MB8 LINE L1 6089 6177 -1 1103 70 0 0 chr4 86365134 86365258 -115963089 + AluSc SINE Alu 1 124 -198 198 0 0 0 chr4 86365258 86365280 -115963067 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1103 70 0 0 chr4 86365280 86365456 -115962891 + AluSc SINE Alu 123 322 0 1984 128 6 34 chr4 86365458 86365779 -115962568 + AluSx SINE Alu 1 312 0 189 0 0 0 chr4 86365812 86365833 -115962514 + (T)n Simple_repeat Simple_repeat 1 21 0 1973 145 3 13 chr4 86366207 86366343 -115962004 + AluSq SINE Alu 1 137 -176 2277 106 0 0 chr4 86366343 86366636 -115961711 + AluSg SINE Alu 1 293 -17 1973 145 3 13 chr4 86366636 86366803 -115961544 + AluSq SINE Alu 137 301 -12 2310 83 3 7 chr4 86367385 86367685 -115960662 - AluY SINE Alu -12 299 1 1535 160 35 63 chr4 86367851 86368169 -115960178 - AluJb SINE Alu -3 309 1 1946 109 7 33 chr4 86368391 86368694 -115959653 + AluSx SINE Alu 3 297 -15 879 199 12 0 chr4 86368695 86368856 -115959491 + AluJb SINE Alu 134 296 -16 215 227 0 45 chr4 86371582 86371623 -115956724 + A-rich Low_complexity Low_complexity 5 43 -24 1121 195 0 0 chr4 86371623 86371797 -115956550 + FAM SINE Alu 2 175 0 215 227 0 45 chr4 86371797 86371821 -115956526 + A-rich Low_complexity Low_complexity 43 67 0 235 291 0 0 chr4 86372095 86372174 -115956173 + A-rich Low_complexity Low_complexity 1 79 0 22 56 0 0 chr4 86372356 86372392 -115955955 + AT_rich Low_complexity Low_complexity 1 36 0 965 188 5 45 chr4 86372684 86372829 -115955518 - LTR65 LTR ERV1 0 669 520 2038 131 10 7 chr4 86372829 86373135 -115955212 + AluJb SINE Alu 1 307 -5 2222 105 0 3 chr4 86373141 86373436 -115954911 + AluSc SINE Alu 1 294 -15 965 188 5 45 chr4 86373436 86373485 -115954862 - LTR65 LTR ERV1 -154 515 476 297 339 65 18 chr4 86374381 86374549 -115953798 - MIR SINE MIR -16 246 71 1908 87 50 11 chr4 86374852 86375129 -115953218 - AluSx SINE Alu -24 288 1 2167 106 0 3 chr4 86375460 86375753 -115952594 + AluSc SINE Alu 1 292 -17 196 167 0 0 chr4 86426308 86426344 -115902003 - L2 LINE L2 -11 3302 3267 180 0 0 0 chr4 86427155 86427175 -115901172 + (T)n Simple_repeat Simple_repeat 1 20 0 342 98 0 0 chr4 86427346 86427397 -115900950 + (TA)n Simple_repeat Simple_repeat 2 52 0 189 175 0 0 chr4 86427528 86427568 -115900779 + (TA)n Simple_repeat Simple_repeat 2 41 0 2150 122 3 0 chr4 86427823 86428133 -115900214 + AluSx SINE Alu 1 311 0 1052 122 41 17 chr4 86428148 86428320 -115900027 + AluSg/x SINE Alu 135 310 0 878 138 0 0 chr4 86428449 86428579 -115899768 + FLAM_C SINE Alu 1 130 -3 659 151 0 0 chr4 86429610 86429703 -115898644 + FLAM_C SINE Alu 11 103 -40 1698 129 4 47 chr4 86429965 86430268 -115898079 + AluY SINE Alu 15 305 0 618 147 17 35 chr4 86430293 86430433 -115897914 + FLAM_C SINE Alu 26 143 0 2129 100 21 7 chr4 86430861 86431151 -115897196 + AluSx SINE Alu 9 302 -10 1739 143 72 0 chr4 86431437 86431716 -115896631 - AluSx SINE Alu -13 299 1 198 329 26 0 chr4 86431853 86431929 -115896418 - L2 LINE L2 -36 3277 3200 1326 206 0 0 chr4 86431952 86432171 -115896176 - MER58A DNA MER1_type -5 219 1 2334 144 61 15 chr4 86432757 86433166 -115895181 - MSTA LTR MaLR 0 428 1 761 169 40 111 chr4 86433631 86433856 -115894491 - MER6B DNA MER2_type 0 210 2 486 163 22 0 chr4 86435335 86435427 -115892920 + AluY SINE Alu 194 287 -24 1998 107 15 0 chr4 86435802 86436073 -115892274 - AluSx SINE Alu -37 275 1 2364 71 10 0 chr4 86436321 86436618 -115891729 + AluY SINE Alu 1 300 -11 894 144 0 0 chr4 86436793 86436918 -115891429 - FLAM_C SINE Alu -18 125 1 181 343 36 57 chr4 86438484 86438624 -115889723 + MIR3 SINE MIR 24 160 -48 180 0 0 0 chr4 86439282 86439302 -115889045 + (TC)n Simple_repeat Simple_repeat 2 21 0 1109 143 0 0 chr4 86439408 86439562 -115888785 + AluJb SINE Alu 147 300 -12 219 69 0 0 chr4 86439749 86439778 -115888569 + (CAT)n Simple_repeat Simple_repeat 3 31 0 812 121 8 30 chr4 86439828 86439960 -115888387 + FLAM_C SINE Alu 5 133 0 1721 158 4 15 chr4 86441229 86441501 -115886846 + AluJo SINE Alu 1 269 -43 305 211 158 0 chr4 86442486 86442562 -115885785 + MIR SINE MIR 101 188 -74 1570 185 78 18 chr4 86442599 86442999 -115885348 - L2 LINE L2 -740 2574 2151 231 310 262 0 chr4 86443274 86443414 -115884933 + MIR SINE MIR 34 206 -56 1503 115 5 0 chr4 86443988 86444196 -115884151 - THE1B LTR MaLR 0 364 156 2079 80 17 14 chr4 86444197 86444486 -115883861 + AluY SINE Alu 2 291 -20 1405 96 5 5 chr4 86444816 86445003 -115883344 - AluSx SINE Alu -125 187 1 1536 113 0 5 chr4 86445051 86445264 -115883083 - AluSg/x SINE Alu -13 299 88 1652 173 0 37 chr4 86445768 86446063 -115882284 + AluJo SINE Alu 5 288 -24 1518 218 101 23 chr4 86446163 86446491 -115881856 - L1M4 LINE L1 -3499 3145 2844 1750 147 15 4 chr4 86446491 86446764 -115881583 - AluJo SINE Alu -14 298 23 1518 218 101 23 chr4 86446764 86446980 -115881367 - L1M4 LINE L1 -3800 2844 2553 2360 112 0 3 chr4 86446980 86447292 -115881055 - AluSx SINE Alu 0 312 2 1518 218 101 23 chr4 86447292 86447337 -115881010 - L1M4 LINE L1 -4091 2553 2513 1007 158 0 0 chr4 86447401 86447565 -115880782 - AluSg/x SINE Alu -12 298 135 572 243 44 15 chr4 86447568 86447774 -115880573 - L1M4 LINE L1 -4250 2396 2185 1972 183 64 33 chr4 86447786 86448239 -115880108 - MLT1C LTR MaLR 0 467 1 598 263 96 17 chr4 86448239 86448479 -115879868 - L1M4 LINE L1 -5930 612 354 1796 162 52 38 chr4 86448479 86448844 -115879503 + MLT1A2 LTR MaLR 1 370 -4 351 249 117 86 chr4 86448847 86449044 -115879303 - L1M4 LINE L1 -6183 359 157 1114 192 113 65 chr4 86449044 86449460 -115878887 - LTR8A LTR ERV1 0 727 292 2293 95 0 7 chr4 86449491 86449787 -115878560 - AluSg1 SINE Alu -15 294 1 850 198 65 145 chr4 86449859 86450041 -115878306 - LTR8 LTR ERV1 -439 288 120 2046 133 0 34 chr4 86450041 86450363 -115877984 + AluJb SINE Alu 1 311 -1 850 198 65 145 chr4 86450363 86450472 -115877875 - LTR8 LTR ERV1 -607 120 4 595 232 39 0 chr4 86450473 86450628 -115877719 - L1M4 LINE L1 -6381 161 1 1161 229 206 32 chr4 86450653 86451115 -115877232 + MLT1G LTR MaLR 32 573 -17 312 120 0 0 chr4 86451909 86451959 -115876388 + (TTG)n Simple_repeat Simple_repeat 3 52 0 2006 125 29 0 chr4 86451959 86452231 -115876116 - AluSx SINE Alu -32 280 1 2000 143 3 16 chr4 86452296 86452610 -115875737 - AluJb SINE Alu -1 311 2 2491 75 3 0 chr4 86452813 86453120 -115875227 + AluY SINE Alu 1 308 -3 371 276 103 19 chr4 86453306 86453462 -115874885 - L2 LINE L2 -2 3311 3143 520 119 36 0 chr4 86453517 86453601 -115874746 + FRAM SINE Alu 69 155 -21 334 231 129 48 chr4 86453601 86453787 -115874560 - L2 LINE L2 -182 3131 2931 1893 107 19 7 chr4 86453787 86454057 -115874290 - THE1C LTR MaLR 0 375 103 4894 86 105 11 chr4 86454058 86454771 -115873576 + LTR17 LTR ERV1 1 780 0 13764 107 38 50 chr4 86454773 86455106 -115873241 + HERV17 LTR ERV1 3 338 -8288 2927 10 0 0 chr4 86455106 86455417 -115872930 - AluY SINE Alu 0 311 1 13764 107 38 50 chr4 86455417 86457413 -115870934 + HERV17 LTR ERV1 338 2305 -6321 1634 166 4 14 chr4 86457715 86457993 -115870354 - AluSx SINE Alu -37 275 1 2487 66 0 3 chr4 86458003 86458305 -115870042 - AluY SINE Alu -8 303 3 1939 144 0 27 chr4 86459029 86459327 -115869020 + AluJb SINE Alu 1 290 -22 2512 57 0 20 chr4 86460604 86460904 -115867443 + AluY SINE Alu 1 294 -17 196 184 0 0 chr4 86460998 86461036 -115867311 - L2 LINE L2 -12 3301 3264 29 47 0 0 chr4 86461297 86461340 -115867007 + AT_rich Low_complexity Low_complexity 1 43 0 1656 166 7 10 chr4 86462339 86462628 -115865719 + AluJb SINE Alu 4 291 -21 2028 135 6 13 chr4 86463332 86463644 -115864703 + AluSx SINE Alu 1 310 -2 1708 118 0 12 chr4 86464394 86464639 -115863708 - AluJb SINE Alu -8 304 63 464 225 77 41 chr4 86464876 86465045 -115863302 - L1MC5 LINE L1 -36 7925 7751 442 97 56 0 chr4 86467165 86467237 -115861110 + L1MA6 LINE L1 6220 6295 -5 435 282 191 8 chr4 86468375 86468720 -115859627 - L2 LINE L2 -236 3036 2627 813 282 226 5 chr4 86469018 86469579 -115858768 - L2 LINE L2 -685 2629 1945 361 178 15 5 chr4 86469659 86469763 -115858584 - L1 LINE L1 -2899 3247 3144 1498 137 45 101 chr4 86470592 86470705 -115857642 - MER44D DNA MER2_type -1884 607 489 2270 115 0 6 chr4 86470705 86471017 -115857330 - AluSx SINE Alu -2 310 1 1498 137 45 101 chr4 86471017 86471260 -115857087 - MER44D DNA MER2_type -2002 489 1 479 279 13 13 chr4 86471637 86471795 -115856552 + L2 LINE L2 2358 2515 -799 895 271 158 8 chr4 86471832 86471902 -115856445 + L2 LINE L2 2679 2737 -576 1233 194 81 18 chr4 86471902 86472185 -115856162 + AluJo SINE Alu 1 301 -1 895 271 158 8 chr4 86472185 86472663 -115855684 + L2 LINE L2 2737 3313 0 895 211 0 0 chr4 86473208 86473364 -115854983 + AluJb SINE Alu 137 292 -20 2478 146 80 7 chr4 86473888 86474340 -115854007 - MER31A LTR ERV1 0 485 1 3797 122 58 24 chr4 86474356 86474979 -115853368 - LTR9B LTR ERV1 0 644 1 1922 118 4 15 chr4 86475007 86475270 -115853077 - AluSq SINE Alu -53 260 1 1567 65 0 51 chr4 86475300 86475516 -115852831 + AluY SINE Alu 36 240 -71 332 331 86 56 chr4 86475879 86476217 -115852130 - L2 LINE L2 -1 3271 2924 1923 163 0 0 chr4 86477184 86477485 -115850862 - AluJb SINE Alu -3 309 9 597 314 0 0 chr4 86477781 86477956 -115850391 - MIR SINE MIR -32 230 56 216 0 0 0 chr4 86478308 86478332 -115850015 + (T)n Simple_repeat Simple_repeat 1 24 0 2377 167 52 109 chr4 86478409 86479105 -115849242 + MLT2F LTR ERVL 1 656 -7 979 176 16 16 chr4 86479541 86479728 -115848619 - MER5A DNA MER1_type 0 189 3 1910 99 28 0 chr4 86479894 86480147 -115848200 - AluSg SINE Alu -15 295 36 236 274 39 59 chr4 86480169 86480373 -115847974 - L2 LINE L2 -961 2353 2154 363 96 0 0 chr4 86480528 86480580 -115847767 + (TCCC)n Simple_repeat Simple_repeat 1 52 0 1877 161 7 3 chr4 86480580 86480872 -115847475 - AluJo SINE Alu -15 297 5 379 303 95 50 chr4 86480879 86481322 -115847025 - L2 LINE L2 -1307 2007 1545 201 94 0 0 chr4 86481363 86481395 -115846952 + (TC)n Simple_repeat Simple_repeat 2 33 0 271 274 20 10 chr4 86481395 86481497 -115846850 + GA-rich Low_complexity Low_complexity 2 104 0 2505 72 3 0 chr4 86481565 86481871 -115846476 + AluY SINE Alu 1 307 -4 2650 96 81 5 chr4 86481979 86482375 -115845972 - MSTA LTR MaLR -2 426 1 192 278 179 24 chr4 86482525 86482737 -115845610 - L2 LINE L2 -980 2334 2090 1488 117 9 0 chr4 86482838 86483052 -115845295 + AluY SINE Alu 77 292 -19 2192 117 0 0 chr4 86485618 86485901 -115842446 - AluSx SINE Alu -16 296 14 2004 108 11 7 chr4 86485909 86486186 -115842161 - AluSc SINE Alu -31 278 1 2396 85 16 3 chr4 86487039 86487344 -115841003 + AluSp SINE Alu 1 309 -4 181 255 0 0 chr4 86488497 86488544 -115839803 + MIR SINE MIR 184 230 -32 2422 68 0 0 chr4 86491166 86491458 -115836889 + AluY SINE Alu 1 292 -19 1890 152 3 19 chr4 86491829 86492138 -115836209 - AluJb SINE Alu -8 304 1 579 203 115 100 chr4 86492273 86492559 -115835788 - L1ME4a LINE L1 -117 6004 5711 2123 139 3 0 chr4 86492559 86492860 -115835487 + AluSx SINE Alu 1 302 -10 579 203 115 100 chr4 86492860 86492922 -115835425 - L1ME4a LINE L1 -410 5711 5651 1737 206 67 31 chr4 86492922 86493368 -115834979 - MLT1C LTR MaLR 0 467 6 382 278 85 72 chr4 86493409 86493632 -115834715 - L1ME4a LINE L1 -503 5618 5393 2295 68 0 17 chr4 86493632 86493924 -115834423 + AluY SINE Alu 1 287 -24 400 322 120 17 chr4 86493943 86494193 -115834154 - L1ME4a LINE L1 -743 5403 5104 828 147 23 0 chr4 86494193 86494322 -115834025 - FLAM_A SINE Alu -1 132 1 400 322 120 17 chr4 86494322 86494428 -115833919 - L1ME4a LINE L1 -1042 5104 5010 2316 94 3 0 chr4 86494536 86494835 -115833512 - AluSc SINE Alu -5 304 5 955 161 21 98 chr4 86494876 86495112 -115833235 + MER20 DNA MER1_type 1 218 -1 1447 237 72 16 chr4 86495425 86495800 -115832547 + MSTD LTR MaLR 1 396 0 354 290 31 62 chr4 86496146 86496339 -115832008 - MER5A DNA MER1_type -2 187 1 331 297 52 65 chr4 86496448 86496754 -115831593 - L1ME4a LINE L1 -1755 4391 4090 257 282 61 28 chr4 86497435 86497616 -115830731 - L1ME4a LINE L1 -2407 3739 3553 1092 171 29 107 chr4 86497620 86497890 -115830457 - LTR37A LTR ERV1 0 426 187 2511 71 0 0 chr4 86497890 86498187 -115830160 + AluY SINE Alu 1 297 -14 1092 171 29 107 chr4 86498187 86498262 -115830085 - LTR37A LTR ERV1 -239 187 108 238 77 51 0 chr4 86498280 86498319 -115830028 - L1MC4 LINE L1 -1339 6703 6663 197 292 88 26 chr4 86498789 86498902 -115829445 + L2 LINE L2 1662 1781 -1533 14199 36 7 1 chr4 86499134 86500781 -115827566 + HERV17 LTR ERV1 2291 3947 -4679 8421 71 1 0 chr4 86500774 86501801 -115826546 + HERV17 LTR ERV1 7599 8626 0 * 4975 87 99 10 chr4 86501801 86502517 -115825830 + LTR17 LTR ERV1 1 780 0 837 87 0 0 chr4 86502517 86502620 -115825727 - THE1C LTR MaLR -270 105 3 1572 252 151 58 chr4 86502620 86502829 -115825518 - L2 LINE L2 -376 2938 2750 1989 116 28 7 chr4 86502829 86503114 -115825233 - AluJb SINE Alu -10 302 12 1572 252 151 58 chr4 86503114 86503827 -115824520 - L2 LINE L2 -564 2750 1931 509 264 180 17 chr4 86503949 86504294 -115824053 + MLT1I LTR MaLR 1 401 -8 2196 109 0 13 chr4 86504462 86504764 -115823583 - AluSx SINE Alu -4 308 11 256 266 16 0 chr4 86504764 86504828 -115823519 - Tigger3(Golem) DNA MER2_type -2963 66 2 * 348 222 74 0 chr4 86504828 86504908 -115823439 + MER21B LTR ERV1 19 104 -759 266 214 43 0 chr4 86504940 86505010 -115823337 + MER21B LTR ERV1 98 170 -693 1538 234 61 42 chr4 86505055 86505533 -115822814 + MER21B LTR ERV1 297 783 -80 25 31 0 0 chr4 86505819 86505851 -115822496 + AT_rich Low_complexity Low_complexity 1 32 0 424 207 45 45 chr4 86506111 86506222 -115822125 - L2 LINE L2 -4 3268 3158 2269 81 13 16 chr4 86506246 86506554 -115821793 - AluSp SINE Alu -6 307 1 198 0 0 0 chr4 86507860 86507882 -115820465 + (TG)n Simple_repeat Simple_repeat 1 22 0 298 250 21 10 chr4 86508337 86508433 -115819914 - MIR SINE MIR 0 262 166 424 262 48 0 chr4 86508511 86508637 -115819710 - MIR SINE MIR -123 139 8 542 92 11 0 chr4 86508742 86508829 -115819518 + Alu SINE Alu 225 312 0 840 216 12 6 chr4 86509067 86509229 -115819118 + FRAM SINE Alu 1 163 -3 182 37 37 0 chr4 86509260 86509287 -115819060 + (TG)n Simple_repeat Simple_repeat 2 29 0 1824 169 0 0 chr4 86509630 86509925 -115818422 + AluJb SINE Alu 1 295 -17 188 0 74 0 chr4 86510385 86510412 -115817935 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 2580 74 0 0 chr4 86510412 86510737 -115817610 - L1PB1 LINE L1 -7 6144 5820 452 226 316 0 chr4 86510767 86510957 -115817390 + MIR SINE MIR 13 262 0 1918 140 9 22 chr4 86511066 86511381 -115816966 - AluJo SINE Alu -1 311 1 21 0 0 0 chr4 86511381 86511402 -115816945 + AT_rich Low_complexity Low_complexity 1 21 0 1041 170 14 64 chr4 86511416 86511634 -115816713 - AluJo SINE Alu -74 238 32 788 157 116 14 chr4 86513036 86513226 -115815121 - AluJb SINE Alu 0 326 122 6031 46 3 7 chr4 86515148 86515893 -115812454 - L1PA6 LINE L1 0 6154 5413 5686 116 28 14 chr4 86515967 86516865 -115811482 - L1MA8 LINE L1 -1 6290 5381 3270 171 32 3 chr4 86516865 86517450 -115810897 - L1MB8 LINE L1 -6 6172 5571 373 269 45 37 chr4 86518302 86518436 -115809911 - MIR SINE MIR -54 208 74 2538 47 3 7 chr4 86518452 86518752 -115809595 + AluY SINE Alu 1 299 -12 607 255 99 10 chr4 86518778 86518970 -115809377 - MIR SINE MIR -37 225 17 481 253 199 7 chr4 86519143 86519289 -115809058 - MIR SINE MIR -3 259 86 1630 136 0 39 chr4 86519309 86519567 -115808780 + AluSx SINE Alu 37 284 -28 1900 80 0 0 chr4 86519832 86520071 -115808276 + AluY SINE Alu 65 303 -8 1117 203 57 13 chr4 86520211 86520438 -115807909 + MIR SINE MIR 25 261 -1 1962 153 31 3 chr4 86521242 86521536 -115806811 - AluJb SINE Alu -10 302 1 22 35 0 0 chr4 86521646 86521675 -115806672 + AT_rich Low_complexity Low_complexity 1 29 0 898 260 157 50 chr4 86521682 86522185 -115806162 + MLT1L LTR MaLR 1 557 -58 324 197 16 0 chr4 86522265 86522326 -115806021 + MLT1J2 LTR MaLR 68 129 -321 730 174 30 0 chr4 86522449 86522581 -115805766 + L1MB4 LINE L1 6039 6174 -6 285 133 83 0 chr4 86522604 86522664 -115805683 + L1MB2 LINE L1 5426 5490 -693 3745 82 6 0 chr4 86522667 86523157 -115805190 + L1P3 LINE L1 765 1257 -5204 303 102 17 34 chr4 86523157 86523210 -115805137 + L1MB2 LINE L1 5998 6050 -116 358 88 132 0 chr4 86523210 86523268 -115805079 + L1MB3 LINE L1 6107 6183 0 429 239 119 50 chr4 86524366 86524525 -115803822 + MLT1J LTR MaLR 5 174 -337 2445 80 0 0 chr4 86525223 86525522 -115802825 + AluSg SINE Alu 1 299 -11 1038 251 29 4 chr4 86526132 86526382 -115801965 + MIR SINE MIR 5 262 0 3179 178 25 29 chr4 86527085 86527641 -115800706 + MLT2B3 LTR ERVL 1 554 0 2229 119 0 0 chr4 86527800 86528103 -115800244 + AluSx SINE Alu 1 303 -9 1746 121 93 17 chr4 86528650 86528940 -115799407 - AluJo SINE Alu 0 312 1 26 0 0 0 chr4 86529034 86529060 -115799287 + AT_rich Low_complexity Low_complexity 1 26 0 1744 92 13 0 chr4 86529224 86529463 -115798884 - L1MA8 LINE L1 -4 6287 6046 507 312 59 0 chr4 86529474 86529660 -115798687 + MIR SINE MIR 51 247 -15 185 327 44 26 chr4 86529803 86529916 -115798431 + L2 LINE L2 3112 3226 -46 206 283 19 0 chr4 86529944 86529997 -115798350 + GA-rich Low_complexity Low_complexity 4 57 0 21 0 0 0 chr4 86530593 86530614 -115797733 + AT_rich Low_complexity Low_complexity 1 21 0 551 217 281 5 chr4 86531511 86531714 -115796633 - MIR SINE MIR -2 260 2 253 362 71 8 chr4 86531746 86531873 -115796474 - L2 LINE L2 -2 3270 3136 246 232 71 101 chr4 86531878 86531977 -115796370 - MIR SINE MIR -114 148 53 1895 153 10 0 chr4 86533023 86533311 -115795036 + AluJb SINE Alu 1 291 -21 7995 170 62 23 chr4 86533333 86534173 -115794174 + L1PA16 LINE L1 3417 4223 -1943 2044 139 17 0 chr4 86534173 86534468 -115793879 + AluSx SINE Alu 1 300 -12 7995 170 62 23 chr4 86534468 86535072 -115793275 + L1PA16 LINE L1 4223 4802 -1364 2442 85 3 0 chr4 86535072 86535379 -115792968 + AluY SINE Alu 1 308 -3 7995 170 62 23 chr4 86535379 86535832 -115792515 + L1PA16 LINE L1 4802 5236 -930 2233 115 7 0 chr4 86535832 86536137 -115792210 + AluSx SINE Alu 1 307 -5 7995 170 62 23 chr4 86536137 86536877 -115791470 + L1PA16 LINE L1 5236 6157 -9 28 29 0 0 chr4 86536926 86536961 -115791386 + AT_rich Low_complexity Low_complexity 1 35 0 235 337 153 36 chr4 86537097 86537489 -115790858 - L2 LINE L2 -21 3251 2814 256 229 96 70 chr4 86537542 86537699 -115790648 - L1ME4a LINE L1 -28 6093 5933 2485 116 26 15 chr4 86537768 86538157 -115790190 + L1MB2 LINE L1 5774 6166 -5 254 191 0 0 chr4 86538284 86538331 -115790016 - L1ME4a LINE L1 -310 5811 5765 224 280 80 84 chr4 86538333 86538558 -115789789 - L2 LINE L2 -1599 1715 1492 1738 126 76 92 chr4 86538559 86538940 -115789407 + THE1C LTR MaLR 1 375 0 2083 89 40 13 chr4 86539043 86539345 -115789002 + AluY SINE Alu 1 310 -1 643 230 83 14 chr4 86539750 86539967 -115788380 + L2 LINE L2 3082 3313 0 211 360 58 0 chr4 86540132 86540218 -115788129 + L2 LINE L2 2969 3059 -213 2620 154 21 16 chr4 86540378 86540806 -115787541 + MSTB1 LTR MaLR 1 430 -2 620 169 71 52 chr4 86541140 86541294 -115787053 - MER5B DNA MER1_type -21 157 1 259 113 211 28 chr4 86541528 86541599 -115786748 - MER3 DNA MER1_type -21 188 105 549 262 8 0 chr4 86541611 86541733 -115786614 - MER58B DNA MER1_type -51 290 168 282 273 105 20 chr4 86544214 86544400 -115783947 + MIR SINE MIR 14 262 0 1266 104 6 0 chr4 86544638 86544802 -115783545 - AluSx SINE Alu -145 167 3 322 303 97 0 chr4 86544872 86545017 -115783330 + MER112 DNA MER1_type 95 253 -7 648 155 0 101 chr4 86545059 86545207 -115783140 + FLAM_A SINE Alu 1 133 0 271 222 111 0 chr4 86545229 86545310 -115783037 + MER103 DNA DNA 42 131 -35 1989 124 23 19 chr4 86546250 86546557 -115781790 - AluSg SINE Alu -2 308 1 1231 139 50 15 chr4 86546706 86546908 -115781439 - MER3 DNA MER1_type 0 209 1 1350 173 84 110 chr4 86547327 86547789 -115780558 + LTR7 LTR ERV1 1 450 0 2098 118 0 32 chr4 86547791 86548104 -115780243 + AluSx SINE Alu 1 303 -9 1679 129 23 19 chr4 86550145 86550409 -115777938 - AluJb SINE Alu -3 309 45 813 180 0 16 chr4 86550719 86550847 -115777500 - FLAM_A SINE Alu -7 126 1 2232 119 0 0 chr4 86550876 86551171 -115777176 - AluSx SINE Alu -17 295 1 1907 117 48 14 chr4 86551919 86552210 -115776137 + AluSx SINE Alu 1 301 -11 2696 117 5 0 chr4 86552210 86552594 -115775753 + L1PA15 LINE L1 5759 6144 -21 2241 103 3 3 chr4 86553607 86553909 -115774438 - AluSc SINE Alu -7 302 1 2492 69 0 7 chr4 86554899 86555205 -115773142 + AluY SINE Alu 1 304 -7 395 220 82 69 chr4 86555962 86556121 -115772226 - MER5B DNA MER1_type -16 162 2 213 208 0 65 chr4 86556472 86556549 -115771798 - L2 LINE L2 -78 3235 3164 2411 89 0 3 chr4 86556693 86557044 -115771303 + AluSx SINE Alu 1 350 0 366 23 0 0 chr4 86557571 86557614 -115770733 + (TG)n Simple_repeat Simple_repeat 2 44 0 419 211 0 13 chr4 86557632 86557708 -115770639 + Tigger1 DNA MER2_type 2344 2418 0 2210 123 3 3 chr4 86557729 86558030 -115770317 - AluSx SINE Alu -11 301 1 223 320 80 0 chr4 86558502 86558577 -115769770 + MIR3 SINE MIR 115 195 -13 259 312 132 31 chr4 86559619 86560065 -115768282 + L2 LINE L2 1608 2098 -1216 2637 37 0 0 chr4 86560659 86560959 -115767388 + AluY SINE Alu 1 300 -11 1830 106 73 4 chr4 86561365 86561638 -115766709 + AluSx SINE Alu 1 292 -20 234 0 0 0 chr4 86562231 86562257 -115766090 + (TA)n Simple_repeat Simple_repeat 2 27 0 7146 196 23 27 chr4 86562277 86562764 -115765583 - L1M4 LINE L1 -941 5205 4718 1637 175 104 25 chr4 86562764 86563129 -115765218 + MSTD LTR MaLR 3 396 0 7146 196 23 27 chr4 86563129 86563520 -115764827 - L1M4 LINE L1 -1428 4718 4327 2272 117 0 13 chr4 86563520 86563829 -115764518 - AluSx SINE Alu -7 305 1 7146 196 23 27 chr4 86563829 86564299 -115764048 - L1M4 LINE L1 -1819 4327 3860 967 70 86 0 chr4 86564299 86564427 -115763920 - MER85 DNA T2_type 0 139 1 7146 196 23 27 chr4 86564427 86564667 -115763680 - L1M4 LINE L1 -2286 3860 3621 341 249 81 0 chr4 86564666 86564809 -115763538 - L1MC1 LINE L1 -508 5825 5668 * 394 219 134 54 chr4 86567358 86567720 -115760627 + MLT1H LTR MaLR 152 553 -2 449 259 42 53 chr4 86569790 86569841 -115758506 - L1MC1 LINE L1 -459 5662 5612 2130 97 0 52 chr4 86569841 86570151 -115758196 - AluSx SINE Alu -18 294 1 449 259 42 53 chr4 86570151 86570288 -115758059 - L1MC1 LINE L1 -509 5612 5476 518 252 110 61 chr4 86570361 86570503 -115757844 - L1MC1 LINE L1 -867 5279 5145 339 25 0 0 chr4 86570503 86570543 -115757804 + (TC)n Simple_repeat Simple_repeat 1 40 0 518 252 110 61 chr4 86570543 86570629 -115757718 - L1MC1 LINE L1 -1001 5145 5065 369 0 0 0 chr4 86570629 86570670 -115757677 + (TG)n Simple_repeat Simple_repeat 1 41 0 518 252 110 61 chr4 86570670 86570710 -115757637 - L1MC1 LINE L1 -1081 5065 5028 1984 122 54 10 chr4 86570710 86571024 -115757323 - AluSq SINE Alu 0 313 1 518 252 110 61 chr4 86571024 86571198 -115757149 - L1MC1 LINE L1 -1118 5028 4813 442 296 90 36 chr4 86571561 86571784 -115756563 + MLT1K LTR MaLR 336 570 -18 192 300 0 0 chr4 86572264 86572314 -115756033 + L2 LINE L2 3259 3308 -5 3189 166 79 9 chr4 86572407 86572987 -115755360 + LTR26E LTR ERV1 2 622 0 364 179 26 13 chr4 86573025 86573103 -115755244 - L1MC1 LINE L1 -2441 3705 3627 321 47 0 0 chr4 86573184 86573227 -115755120 + (CA)n Simple_repeat Simple_repeat 1 43 0 241 231 184 68 chr4 86574299 86574446 -115753901 + MIR3 SINE MIR 39 202 -6 724 311 89 27 chr4 86575273 86575814 -115752533 + L2 LINE L2 2740 3313 0 687 228 18 7 chr4 86575892 86576056 -115752291 - MIR SINE MIR -24 238 74 1222 157 61 102 chr4 86576061 86576543 -115751804 - MLT1B LTR MaLR 0 467 1 282 273 0 0 chr4 86576543 86576609 -115751738 - MIR SINE MIR -192 70 5 241 241 0 103 chr4 86576658 86576745 -115751602 + MLT1L LTR MaLR 1 78 -537 375 276 66 21 chr4 86576815 86577073 -115751274 + MLT1L LTR MaLR 110 460 -155 1017 177 72 24 chr4 86577133 86577382 -115750965 - L1MB7 LINE L1 0 6184 5924 269 315 19 68 chr4 86577543 86577592 -115750755 + MIR3 SINE MIR 41 91 -117 1702 171 53 0 chr4 86577592 86577756 -115750591 - AluJo SINE Alu -16 296 109 404 37 19 0 chr4 86577756 86577810 -115750537 + (TG)n Simple_repeat Simple_repeat 2 56 0 1702 171 53 0 chr4 86577810 86577926 -115750421 - AluJo SINE Alu -203 109 1 269 315 19 68 chr4 86577926 86578038 -115750309 + MIR3 SINE MIR 91 194 -14 374 278 56 0 chr4 86578569 86578695 -115749652 + L1ME1 LINE L1 6030 6162 -4 872 223 12 45 chr4 86578700 86578947 -115749400 + L1MC5 LINE L1 7696 7934 -27 251 242 153 48 chr4 86579289 86579413 -115748934 - MIR SINE MIR -111 151 15 1180 224 21 14 chr4 86579605 86579886 -115748461 + LTR16A1 LTR ERVL 175 457 0 349 347 111 0 chr4 86580468 86580684 -115747663 + MIR SINE MIR 21 260 -2 270 328 114 0 chr4 86580909 86581040 -115747307 + L2 LINE L2 3122 3267 -5 614 151 14 27 chr4 86581150 86581296 -115747051 + GA-rich Low_complexity Low_complexity 3 146 0 394 289 39 16 chr4 86581910 86582038 -115746309 - L2 LINE L2 -15 3257 3127 207 100 0 0 chr4 86583090 86583120 -115745227 + (CA)n Simple_repeat Simple_repeat 1 30 0 1962 139 0 62 chr4 86583332 86583655 -115744692 - AluSx SINE Alu -7 305 3 234 329 24 0 chr4 86583741 86583823 -115744524 + L2 LINE L2 2554 2637 -677 34 24 0 0 chr4 86584180 86584221 -115744126 + AT_rich Low_complexity Low_complexity 1 41 0 2272 100 0 14 chr4 86584897 86585188 -115743159 - AluSc SINE Alu -22 287 1 679 244 240 35 chr4 86585742 86586196 -115742151 + MLT1H1 LTR MaLR 9 555 0 2283 96 0 0 chr4 86587128 86587447 -115740900 + AluSq SINE Alu 1 319 0 587 238 63 0 chr4 86587585 86587711 -115740636 + MER94 DNA DNA 1 134 0 521 312 6 13 chr4 86587834 86587991 -115740356 + MER5B DNA MER1_type 23 178 0 227 161 0 36 chr4 86588148 86588204 -115740143 - Alu SINE Alu 0 300 247 539 110 0 44 chr4 86588204 86588295 -115740052 + AluJ/FRAM SINE Alu 221 307 -5 24 32 0 0 chr4 86588296 86588327 -115740020 + AT_rich Low_complexity Low_complexity 1 31 0 508 239 199 24 chr4 86590182 86590433 -115737914 + L1MC4a LINE L1 5690 5984 -1824 287 216 224 0 chr4 86590695 86590787 -115737560 + MIR SINE MIR 46 155 -63 261 167 56 0 chr4 86590861 86590915 -115737432 - MIR SINE MIR -122 86 30 559 205 50 19 chr4 86591135 86591296 -115737051 + L1MC5 LINE L1 7760 7925 -36 1883 232 55 33 chr4 86591309 86591852 -115736495 + MLT1H1 LTR MaLR 1 555 0 590 243 6 0 chr4 86591859 86592036 -115736311 + (CA)n Simple_repeat Simple_repeat 1 178 0 347 303 165 12 chr4 86592727 86592981 -115735366 + L2 LINE L2 3021 3313 0 1774 185 10 0 chr4 86592994 86593292 -115735055 - AluJo SINE Alu -11 301 1 249 225 108 54 chr4 86593301 86593412 -115734935 + L1ME LINE L1 5694 5810 -311 2272 100 0 14 chr4 86594365 86594656 -115733691 - AluSc SINE Alu -22 287 1 700 251 238 33 chr4 86595210 86595664 -115732683 + MLT1H1 LTR MaLR 9 555 0 2283 96 0 0 chr4 86596595 86596914 -115731433 + AluSq SINE Alu 1 319 0 546 240 72 0 chr4 86597052 86597177 -115731170 + MER94 DNA DNA 1 134 0 231 253 0 103 chr4 86597304 86597478 -115730869 + MER5B DNA MER1_type 23 178 0 968 263 111 58 chr4 86597574 86597632 -115730715 - MLT1L LTR MaLR -9 606 552 2251 105 0 10 chr4 86597632 86597937 -115730410 - AluSg SINE Alu -7 303 2 968 263 111 58 chr4 86597937 86598357 -115729990 - MLT1L LTR MaLR -63 552 103 207 254 0 30 chr4 86598469 86598536 -115729811 + MIR SINE MIR 149 213 -49 964 115 0 0 chr4 86598802 86598932 -115729415 + AluJb SINE Alu 171 300 -12 24 32 0 0 chr4 86598944 86598975 -115729372 + AT_rich Low_complexity Low_complexity 1 31 0 508 239 199 24 chr4 86600829 86601080 -115727267 + L1MC4a LINE L1 5690 5984 -1824 287 216 224 0 chr4 86601342 86601434 -115726913 + MIR SINE MIR 46 155 -63 261 167 56 0 chr4 86601508 86601562 -115726785 - MIR SINE MIR -122 86 30 559 205 50 19 chr4 86601782 86601943 -115726404 + L1MC5 LINE L1 7760 7925 -36 1883 232 55 33 chr4 86601956 86602499 -115725848 + MLT1H1 LTR MaLR 1 555 0 590 243 6 0 chr4 86602506 86602683 -115725664 + (CA)n Simple_repeat Simple_repeat 1 178 0 347 303 165 12 chr4 86603374 86603628 -115724719 + L2 LINE L2 3021 3313 0 1774 185 10 0 chr4 86603641 86603939 -115724408 - AluJo SINE Alu -11 301 1 249 225 108 54 chr4 86603948 86604059 -115724288 + L1ME LINE L1 5694 5810 -311 1893 198 46 31 chr4 86604987 86605442 -115722905 + MLT1C LTR MaLR 6 467 0 2282 97 3 0 chr4 86605979 86606278 -115722069 - AluSx SINE Alu -12 300 1 717 169 29 169 chr4 86606356 86606635 -115721712 - MIR SINE MIR -21 241 2 2184 104 3 3 chr4 86607442 86607739 -115720608 + AluSx SINE Alu 1 297 -15 2099 136 7 0 chr4 86608249 86608557 -115719790 - AluSx SINE Alu -2 310 1 1594 169 3 62 chr4 86609426 86609734 -115718613 + AluJo SINE Alu 1 290 -22 221 128 43 21 chr4 86610811 86610858 -115717489 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 2125 197 29 71 chr4 86610940 86611518 -115716829 - MLT2B3 LTR ERVL 0 554 1 183 184 0 0 chr4 86611569 86611607 -115716740 + (CATG)n Simple_repeat Simple_repeat 3 40 0 2182 129 0 0 chr4 86612253 86612555 -115715792 - AluSx SINE Alu -10 302 1 231 163 0 0 chr4 86613402 86613445 -115714902 - L2 LINE L2 -1 3312 3270 986 244 24 21 chr4 86613737 86614024 -115714323 + LTR16B LTR ERVL 169 456 -8 251 192 101 16 chr4 86614297 86614388 -115713959 + MLT1J1 LTR MaLR 47 106 -340 419 196 233 63 chr4 86614504 86614693 -115713654 + MLT1J LTR MaLR 289 509 -2 260 229 29 14 chr4 86616634 86616704 -115711643 - LTR33 LTR ERVL 0 521 451 523 292 40 86 chr4 86616708 86617081 -115711266 - LTR16B LTR ERVL 0 464 109 225 0 0 0 chr4 86617082 86617107 -115711240 + (CAG)n Simple_repeat Simple_repeat 2 26 0 291 297 203 0 chr4 86617356 86617494 -115710853 - LTR33 LTR ERVL -307 214 49 580 83 21 0 chr4 86617726 86617822 -115710525 + (GA)n Simple_repeat Simple_repeat 2 99 0 2033 161 43 5 chr4 86619090 86619463 -115708884 - MLT1B LTR MaLR -3 387 1 2440 90 3 0 chr4 86619777 86620087 -115708260 - AluSp SINE Alu -2 311 1 283 315 24 24 chr4 86620141 86620268 -115708079 - L2 LINE L2 -9 3263 3137 903 135 0 0 chr4 86620297 86620430 -115707917 - FLAM_C SINE Alu 0 143 11 213 39 0 0 chr4 86620477 86620503 -115707844 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 209 321 0 0 chr4 86620505 86620586 -115707761 - L2 LINE L2 -15 3257 3177 623 135 0 9 chr4 86620717 86620828 -115707519 + (TCCC)n Simple_repeat Simple_repeat 4 113 0 203 59 0 29 chr4 86621490 86621524 -115706823 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2133 124 7 0 chr4 86621690 86621996 -115706351 - AluSx SINE Alu -4 308 1 2307 96 3 0 chr4 86622423 86622714 -115705633 + AluSp SINE Alu 1 292 -21 271 212 59 24 chr4 86623180 86623265 -115705082 - MIR SINE MIR -66 142 55 1763 119 19 77 chr4 86623655 86624006 -115704341 + AluSx SINE Alu 1 333 0 2331 80 10 0 chr4 86624624 86624913 -115703434 - AluY SINE Alu -19 292 1 287 277 0 12 chr4 86625621 86625704 -115702643 - MIR SINE MIR -111 97 16 417 194 129 16 chr4 86626009 86626133 -115702214 - MIR3 SINE MIR -16 192 55 217 159 16 79 chr4 86627033 86627096 -115701251 + L2 LINE L2 421 479 -2835 1141 38 0 0 chr4 86628550 86628681 -115699666 + AluYa5 SINE Alu 163 293 -18 2348 100 0 7 chr4 86628690 86629000 -115699347 + AluSx SINE Alu 1 308 -4 6201 44 0 1 chr4 86629899 86630642 -115697705 - L1PA6 LINE L1 0 6154 5413 5686 119 23 11 chr4 86630716 86631614 -115696733 - L1MA8 LINE L1 -1 6290 5382 3103 171 32 3 chr4 86631614 86632199 -115696148 - L1MB8 LINE L1 -6 6172 5571 339 269 45 37 chr4 86633051 86633185 -115695162 - MIR SINE MIR -54 208 74 2563 47 3 7 chr4 86633201 86633501 -115694846 + AluY SINE Alu 1 299 -12 552 255 99 10 chr4 86633527 86633719 -115694628 - MIR SINE MIR -37 225 17 438 253 199 7 chr4 86633892 86634038 -115694309 - MIR SINE MIR -3 259 86 1732 136 0 37 chr4 86634058 86634331 -115694016 + AluSx SINE Alu 37 299 -13 321 214 0 14 chr4 86634839 86634909 -115693438 - Charlie8 DNA MER1_type -1001 1416 1348 279 184 72 136 chr4 86635316 86635441 -115692906 - L2 LINE L2 -11 3261 3145 2337 78 100 0 chr4 86635744 86636075 -115692272 - L1PA10 LINE L1 -16 6152 5789 841 251 72 0 chr4 86636694 86636917 -115691430 - MIR SINE MIR -22 240 2 249 221 39 26 chr4 86637372 86637449 -115690898 - LTR16A LTR ERVL -280 170 93 354 192 0 26 chr4 86638842 86638920 -115689427 + MIR SINE MIR 77 152 -110 1221 121 6 0 chr4 86638972 86639145 -115689202 + AluSg/x SINE Alu 135 308 -2 183 171 57 0 chr4 86639149 86639184 -115689163 - L2 LINE L2 -75 3238 3202 607 307 128 6 chr4 86639216 86639561 -115688786 - L2 LINE L2 -113 3200 2814 923 256 119 28 chr4 86639577 86639964 -115688383 - L2 LINE L2 -684 2630 2209 416 229 69 30 chr4 86640564 86640695 -115687652 + MER5B DNA MER1_type 5 140 -38 667 211 53 72 chr4 86640741 86640949 -115687398 + MLT1L LTR MaLR 40 243 -372 1847 237 70 4 chr4 86640964 86641608 -115686739 + L1MB4 LINE L1 5477 6180 0 552 270 86 17 chr4 86641696 86641929 -115686418 + MLT1L LTR MaLR 366 614 -1 559 272 33 17 chr4 86642102 86642282 -115686065 + LTR16A LTR ERVL 268 450 0 2079 137 7 3 chr4 86642894 86643201 -115685146 + AluSx SINE Alu 1 308 -4 2178 115 0 7 chr4 86644700 86644988 -115683359 - AluSx SINE Alu -26 286 1 221 304 0 0 chr4 86645046 86645102 -115683245 + (TG)n Simple_repeat Simple_repeat 2 57 0 369 0 0 0 chr4 86647044 86647085 -115681262 + (TG)n Simple_repeat Simple_repeat 1 41 0 576 173 91 68 chr4 86648229 86648276 -115680071 - Charlie1 DNA MER1_type -11 2750 2706 1928 146 3 7 chr4 86648276 86648571 -115679776 + AluJb SINE Alu 1 294 -18 576 173 91 68 chr4 86648571 86648743 -115679604 - Charlie1 DNA MER1_type -55 2706 2526 1393 154 37 11 chr4 86648751 86649024 -115679323 - Charlie1 DNA MER1_type -137 2624 2345 380 224 0 66 chr4 86649022 86649098 -115679249 - Charlie1 DNA MER1_type -2690 71 1 * 2542 75 12 0 chr4 86649150 86649485 -115678862 + L1PB1 LINE L1 5812 6150 -1 2057 114 4 0 chr4 86649495 86649768 -115678579 + AluSq SINE Alu 1 274 -39 470 191 0 19 chr4 86649837 86649966 -115678381 - MER5A DNA MER1_type 0 178 7 270 329 86 29 chr4 86650306 86650446 -115677901 + MIR3 SINE MIR 2 149 -59 1781 167 3 7 chr4 86650738 86651031 -115677316 + AluJb SINE Alu 5 296 -16 439 0 66 0 chr4 86651540 86651601 -115676746 + (TAGA)n Simple_repeat Simple_repeat 3 67 0 1922 114 4 8 chr4 86651782 86652046 -115676301 - AluSx SINE Alu -15 297 35 222 250 31 16 chr4 86653601 86653665 -115674682 - MIR SINE MIR -56 206 142 19579 88 9 1 chr4 86653970 86656331 -115672016 - L1PA7 LINE L1 -8 6146 3755 1500 110 4 73 chr4 86656331 86656577 -115671770 - AluSc SINE Alu -12 297 69 19579 88 9 1 chr4 86656577 86657674 -115670673 - L1PA7 LINE L1 -2399 3755 2668 4038 97 5 0 chr4 86657674 86658231 -115670116 + L1PA7 LINE L1 2125 2684 -3462 311 258 43 0 chr4 86658422 86658515 -115669832 - MIR SINE MIR -56 206 110 1777 166 14 14 chr4 86659921 86660216 -115668131 - AluJo SINE Alu -17 295 1 320 252 85 69 chr4 86660277 86660441 -115667906 + L1ME4a LINE L1 5568 5739 -382 2431 84 10 0 chr4 86660441 86660740 -115667607 + AluSq SINE Alu 1 302 -11 320 252 85 69 chr4 86660740 86660821 -115667526 + L1ME4a LINE L1 5739 5817 -304 4016 234 99 66 chr4 86660881 86661404 -115666943 + L1MCc LINE L1 17 521 -6167 1045 31 78 0 chr4 86661404 86661532 -115666815 + MER85 DNA T2_type 1 138 -1 4016 234 99 66 chr4 86661532 86662708 -115665639 + L1MCc LINE L1 521 1785 -4903 722 120 0 51 chr4 86662709 86662826 -115665521 + FLAM_C SINE Alu 1 111 -32 351 0 0 0 chr4 86662827 86662866 -115665481 + (TC)n Simple_repeat Simple_repeat 2 40 0 338 195 13 0 chr4 86662866 86662943 -115665404 + (TA)n Simple_repeat Simple_repeat 2 79 0 920 149 62 19 chr4 86662955 86663116 -115665231 + FRAM SINE Alu 1 165 -11 1231 237 75 35 chr4 86663123 86663659 -115664688 + L1MCc LINE L1 1988 2544 -4578 334 271 56 21 chr4 86663730 86663874 -115664473 + L1ME4a LINE L1 5959 6107 -14 1483 49 5 0 chr4 86664226 86664410 -115663937 + AluY SINE Alu 127 311 0 180 274 119 0 chr4 86664730 86664814 -115663533 + MIR SINE MIR 156 249 -13 23 33 0 0 chr4 86664836 86664866 -115663481 + AT_rich Low_complexity Low_complexity 1 30 0 228 135 0 0 chr4 86665135 86665172 -115663175 + (CACG)n Simple_repeat Simple_repeat 2 38 0 303 323 10 0 chr4 86666322 86666418 -115661929 + L2 LINE L2 3217 3313 0 6639 152 35 29 chr4 86667174 86668362 -115659985 + L1MC1 LINE L1 4 1199 -5227 551 186 12 19 chr4 86668345 86668506 -115659841 + L1MC1 LINE L1 2296 2455 -3971 * 10122 203 32 14 chr4 86668715 86669461 -115658886 + L1MC1 LINE L1 2379 3111 -3502 2126 132 0 10 chr4 86669461 86669765 -115658582 + AluSx SINE Alu 1 301 -11 10122 203 32 14 chr4 86669765 86673178 -115655169 + L1MC1 LINE L1 3111 6613 0 917 257 104 66 chr4 86673746 86674186 -115654161 + MLT1J LTR MaLR 1 457 -54 370 327 123 6 chr4 86674340 86674502 -115653845 - MER115 DNA AcHobo -319 374 194 247 329 41 0 chr4 86674596 86674669 -115653678 - Zaphod DNA AcHobo -615 78 3 697 284 72 30 chr4 86675724 86675960 -115652387 + MER74A LTR ERVL 35 280 -278 307 347 25 0 chr4 86676409 86676530 -115651817 + L1ME LINE L1 5704 5827 -294 2230 79 14 4 chr4 86676784 86677168 -115651179 + AluSx SINE Alu 1 387 0 660 236 157 18 chr4 86677357 86677586 -115650761 - MIR SINE MIR 0 262 2 1533 111 22 0 chr4 86679123 86679348 -115648999 - L1PA13 LINE L1 -347 5821 5592 2152 71 55 0 chr4 86679348 86679652 -115648695 + L1PA13 LINE L1 5835 6160 -3 23 33 0 0 chr4 86680345 86680375 -115647972 + AT_rich Low_complexity Low_complexity 1 30 0 989 169 12 12 chr4 86680511 86680677 -115647670 - AluJo/FRAM SINE Alu 0 302 137 1436 151 0 0 chr4 86680680 86680898 -115647449 - AluSg/x SINE Alu -12 298 81 1946 125 60 38 chr4 86681479 86681846 -115646501 + THE1C LTR MaLR 1 375 0 22 35 0 0 chr4 86682238 86682267 -115646080 + AT_rich Low_complexity Low_complexity 1 29 0 266 123 41 41 chr4 86683166 86683239 -115645108 - Charlie5 DNA MER1_type 0 2614 2542 2034 108 11 7 chr4 86683293 86683580 -115644767 + AluSx SINE Alu 1 288 -24 1476 148 0 0 chr4 86683680 86683889 -115644458 - AluJo SINE Alu -103 209 1 543 291 23 6 chr4 86683961 86684136 -115644211 + L1ME4a LINE L1 5532 5709 -412 2253 129 0 0 chr4 86684473 86684784 -115643563 + AluSx SINE Alu 2 312 0 368 226 110 37 chr4 86684845 86685009 -115643338 + L1ME4a LINE L1 5944 6119 -2 221 234 16 0 chr4 86685850 86685914 -115642433 + (TG)n Simple_repeat Simple_repeat 2 66 0 4523 195 94 54 chr4 86686641 86686862 -115641485 + L1MC4 LINE L1 6722 6933 -1109 453 184 233 0 chr4 86686862 86686965 -115641382 + FLAM_A SINE Alu 1 127 -6 4523 195 94 54 chr4 86686965 86688012 -115640335 + L1MC4 LINE L1 6933 8041 -1 200 318 55 18 chr4 86688078 86688188 -115640159 + L2 LINE L2 2560 2673 -641 2250 106 0 0 chr4 86688586 86688909 -115639438 - AluSq SINE Alu 0 323 1 714 214 65 45 chr4 86689096 86689297 -115639050 + MER21B LTR ERV1 1 205 -658 429 287 112 14 chr4 86690899 86691122 -115637225 + L2 LINE L2 2461 2705 -609 216 0 0 0 chr4 86691136 86691160 -115637187 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr4 86692103 86692126 -115636221 + AT_rich Low_complexity Low_complexity 1 23 0 1422 109 9 14 chr4 86692259 86692469 -115635878 - Tigger2a DNA MER2_type -225 209 1 893 198 32 103 chr4 86692469 86692721 -115635626 + MER21B LTR ERV1 486 719 -144 688 289 143 45 chr4 86692758 86693246 -115635101 - L2 LINE L2 -494 2820 2285 272 294 59 0 chr4 86694522 86694607 -115633740 + MIR3 SINE MIR 113 202 -6 739 262 166 23 chr4 86696097 86696599 -115631748 + L2 LINE L2 2714 3293 -20 236 59 0 0 chr4 86696639 86696673 -115631674 + Charlie3 DNA MER1_type 1 34 -2676 * 650 190 13 9 chr4 86696671 86696798 -115631549 + Charlie3 DNA MER1_type 248 2702 -8 499 294 47 6 chr4 86696798 86696968 -115631379 + MIR SINE MIR 2 178 -84 1279 110 0 0 chr4 86696975 86697139 -115631208 - AluSg/x SINE Alu -19 293 130 357 85 34 0 chr4 86697149 86697208 -115631139 - AluSp/q SINE Alu 0 303 243 1961 142 0 41 chr4 86697208 86697240 -115631107 + AluSx SINE Alu 6 38 -274 2282 93 10 0 chr4 86697240 86697540 -115630807 - AluSc SINE Alu -6 303 1 1961 142 0 41 chr4 86697540 86697823 -115630524 + AluSx SINE Alu 38 308 -4 2956 122 136 198 chr4 86697823 86698220 -115630127 + L1MCa LINE L1 1301 1721 -4705 1269 130 0 0 chr4 86698220 86698397 -115629950 + FRAM SINE Alu 1 176 0 2956 122 136 198 chr4 86698397 86699149 -115629198 + L1MCa LINE L1 1721 2548 -3878 344 275 94 14 chr4 86699168 86699306 -115629041 + MIR3 SINE MIR 37 185 -23 2227 113 0 0 chr4 86699741 86700024 -115628323 - AluSx SINE Alu -29 283 1 451 223 33 25 chr4 86700643 86700764 -115627583 + L2 LINE L2 3188 3309 -4 330 292 232 0 chr4 86700962 86701130 -115627217 - MIR SINE MIR -9 253 47 628 288 21 25 chr4 86702349 86702585 -115625762 + MIR SINE MIR 19 253 -9 234 261 0 15 chr4 86704416 86704481 -115623866 + MLT1K LTR MaLR 498 561 -27 2358 209 104 22 chr4 86705015 86705551 -115622796 + MLT1E LTR MaLR 14 593 0 722 196 83 44 chr4 86705609 86705838 -115622509 + L1MB8 LINE L1 5936 6173 -5 636 206 7 0 chr4 86706487 86706623 -115621724 - MIR SINE MIR -2 260 124 209 304 0 0 chr4 86706916 86706972 -115621375 - L2 LINE L2 -20 3293 3238 212 410 55 11 chr4 86707038 86707221 -115621126 - L2 LINE L2 -167 3105 2915 1002 167 0 29 chr4 86707238 86707412 -115620935 + L1M3 LINE L1 5594 5762 -421 373 240 85 23 chr4 86707514 86707643 -115620704 - MIR SINE MIR -92 170 34 270 241 301 8 chr4 86707661 86707794 -115620553 + MER5B DNA MER1_type 1 172 -6 196 317 17 0 chr4 86707821 86707881 -115620466 - MIR3 SINE MIR -38 170 110 275 253 13 13 chr4 86708972 86709047 -115619300 + L2 LINE L2 3138 3212 -60 * 1759 250 72 31 chr4 86709028 86709759 -115618588 + L2 LINE L2 1135 1895 -1419 1502 140 31 0 chr4 86710045 86710273 -115618074 + MER46A DNA MER2_type 2 236 0 2309 108 0 0 chr4 86710337 86710634 -115617713 + AluSx SINE Alu 1 297 -15 301 256 99 8 chr4 86710709 86710830 -115617517 + LTR33 LTR ERVL 1 132 -389 251 230 18 0 chr4 86710858 86710928 -115617419 + MIR SINE MIR 79 141 -67 490 132 0 0 chr4 86711683 86711759 -115616588 - MLT1B LTR MaLR -302 88 13 1001 274 49 65 chr4 86711795 86711989 -115616358 - LTR16A LTR ERVL -9 441 246 1555 175 7 38 chr4 86711989 86712316 -115616031 - AluJo SINE Alu 0 318 1 1001 274 49 65 chr4 86712316 86712558 -115615789 - LTR16A LTR ERVL -204 246 8 239 183 163 124 chr4 86712565 86712718 -115615629 - L1MC5 LINE L1 -773 7188 7030 1915 138 26 26 chr4 86712726 86713038 -115615309 - AluJo SINE Alu 0 312 1 521 136 280 114 chr4 86713094 86713167 -115615180 + ORSL DNA AcHobo 1 61 -214 1577 123 0 0 chr4 86713167 86713379 -115614968 + AluSg/x SINE Alu 82 293 -17 2489 70 0 0 chr4 86713383 86713682 -115614665 + AluY SINE Alu 1 299 -12 521 136 280 114 chr4 86713682 86713839 -115614508 + ORSL DNA AcHobo 63 275 0 486 197 161 105 chr4 86713841 86714146 -115614201 - MER102b DNA MER1_type -17 324 3 23 0 0 0 chr4 86715089 86715112 -115613235 + AT_rich Low_complexity Low_complexity 1 23 0 2166 113 0 0 chr4 86715244 86715551 -115612796 - AluSx SINE Alu 0 307 1 1845 141 3 11 chr4 86716057 86716340 -115612007 + MER2 DNA MER2_type 1 281 -64 2355 110 0 0 chr4 86716343 86716651 -115611696 - AluSx SINE Alu -2 310 3 662 172 16 152 chr4 86717117 86717315 -115611032 + MER20 DNA MER1_type 3 164 -55 1774 176 28 0 chr4 86717315 86717599 -115610748 + AluJb SINE Alu 6 297 -15 662 172 16 152 chr4 86717599 86717644 -115610703 + MER20 DNA MER1_type 164 213 -6 622 217 7 0 chr4 86717867 86718005 -115610342 - MIR SINE MIR 0 262 124 404 266 7 50 chr4 86718042 86718122 -115610225 - MER5A DNA MER1_type -38 151 69 468 0 0 0 chr4 86718122 86718174 -115610173 + (TA)n Simple_repeat Simple_repeat 2 53 0 2330 91 0 35 chr4 86718174 86718492 -115609855 - AluSg SINE Alu -3 307 1 404 266 7 50 chr4 86718492 86718549 -115609798 - MER5A DNA MER1_type -118 71 19 183 205 0 0 chr4 86718596 86718635 -115609712 + (TG)n Simple_repeat Simple_repeat 2 40 0 453 267 96 0 chr4 86719119 86719254 -115609093 + LTR16A LTR ERVL 294 441 -9 1825 160 22 78 chr4 86719290 86719690 -115608657 + MLT1B LTR MaLR 13 390 0 434 261 17 0 chr4 86719724 86719843 -115608504 + L1MC4 LINE L1 7277 7397 -645 2158 108 3 7 chr4 86720345 86720641 -115607706 + AluSq SINE Alu 1 295 -18 2156 109 3 29 chr4 86720649 86720960 -115607387 + AluSq SINE Alu 1 303 -10 21 0 0 0 chr4 86721121 86721142 -115607205 + AT_rich Low_complexity Low_complexity 1 21 0 424 271 110 99 chr4 86721467 86721821 -115606526 + L1MC4 LINE L1 7390 7747 -295 580 238 108 5 chr4 86721823 86722046 -115606301 + L1MC4 LINE L1 7796 8041 -1 891 129 0 7 chr4 86722197 86722336 -115606011 + FLAM_C SINE Alu 1 138 -5 276 254 79 9 chr4 86722503 86722617 -115605730 + MIR SINE MIR 100 221 -41 182 321 0 0 chr4 86722680 86722733 -115605614 - MIR SINE MIR -188 74 22 1884 164 3 3 chr4 86723440 86723751 -115604596 + AluJb SINE Alu 1 311 -1 2330 76 7 0 chr4 86723999 86724301 -115604046 + AluSp SINE Alu 1 304 -9 358 261 52 8 chr4 86724440 86724574 -115603773 + MER112 DNA MER1_type 28 167 -93 2046 109 3 7 chr4 86725563 86725865 -115602482 - AluSx SINE Alu -7 305 5 268 168 0 0 chr4 86725946 86726000 -115602347 + Alu SINE Alu 253 301 -1 21 0 0 0 chr4 86726000 86726021 -115602326 + AT_rich Low_complexity Low_complexity 1 21 0 2875 166 74 74 chr4 86726036 86726763 -115601584 + LTR8A LTR ERV1 1 727 0 2073 48 0 0 chr4 86727118 86727366 -115600981 - L1PA5 LINE L1 0 6154 5907 780 258 149 84 chr4 86727731 86728037 -115600310 + LTR16C LTR ERVL 1 347 -144 1929 139 0 10 chr4 86728037 86728340 -115600007 - AluJb SINE Alu 0 312 13 780 258 149 84 chr4 86728340 86728483 -115599864 + LTR16C LTR ERVL 347 479 -12 1649 131 3 56 chr4 86728844 86729165 -115599182 + AluY SINE Alu 1 304 -7 398 285 104 0 chr4 86729335 86729479 -115598868 + L2 LINE L2 3114 3272 0 232 306 264 0 chr4 86730055 86730199 -115598148 - MIR3 SINE MIR -11 197 16 335 85 0 0 chr4 86731126 86731173 -115597174 + Alu SINE Alu 252 298 -4 803 226 126 22 chr4 86732375 86732605 -115595742 - MIR SINE MIR -1 261 8 608 195 161 49 chr4 86732736 86732941 -115595406 + MIR SINE MIR 34 261 -1 390 169 15 0 chr4 86733012 86733077 -115595270 - MER5A DNA MER1_type -122 67 2 537 169 19 130 chr4 86733203 86733357 -115594990 + MLT1B LTR MaLR 1 137 -253 1520 162 22 7 chr4 86733357 86733628 -115594719 - AluJo SINE Alu -33 279 5 734 236 108 0 chr4 86733993 86734205 -115594142 - MIR SINE MIR -14 248 14 482 258 25 0 chr4 86734225 86734345 -115594002 + MIR SINE MIR 49 171 -91 190 347 42 21 chr4 86734454 86734549 -115593798 - L2 LINE L2 -173 3099 3003 727 227 0 0 chr4 86734798 86734939 -115593408 + AluJb SINE Alu 153 293 -19 231 344 16 16 chr4 86734942 86735070 -115593277 - L2 LINE L2 -598 2716 2589 588 92 13 0 chr4 86735179 86735255 -115593092 - AluSp SINE Alu -123 190 114 2003 177 56 50 chr4 86735355 86735818 -115592529 + MER34B LTR ERV1 82 547 -18 345 113 65 8 chr4 86735818 86735942 -115592405 + (TA)n Simple_repeat Simple_repeat 1 131 0 1791 104 4 0 chr4 86735942 86736192 -115592155 - AluY SINE Alu -24 287 37 2303 78 7 0 chr4 86736206 86736515 -115591832 - AluY SINE Alu 0 311 1 1752 111 49 14 chr4 86737734 86738022 -115590325 - AluSx SINE Alu -14 298 1 2010 115 0 0 chr4 86738372 86738658 -115589689 - AluSc SINE Alu -23 286 1 32 0 0 0 chr4 86738994 86739026 -115589321 + AT_rich Low_complexity Low_complexity 1 32 0 313 315 178 0 chr4 86739757 86739903 -115588444 + MER5A DNA MER1_type 11 182 -7 294 230 103 11 chr4 86739924 86740011 -115588336 + MER5B DNA MER1_type 8 102 -76 183 241 81 46 chr4 86740106 86740193 -115588154 - MIR SINE MIR -144 118 29 366 282 120 50 chr4 86740523 86740912 -115587435 - L1M4 LINE L1 -1227 3199 1072 2068 82 3 17 chr4 86741312 86741603 -115586744 - AluSc SINE Alu -22 287 1 227 333 120 17 chr4 86742569 86742686 -115585661 + L1MC/D LINE L1 5497 5625 -2183 26 0 0 0 chr4 86742742 86742768 -115585579 + AT_rich Low_complexity Low_complexity 1 26 0 1756 158 7 14 chr4 86742776 86743073 -115585274 + AluJb SINE Alu 1 295 -17 2168 99 3 0 chr4 86743122 86743416 -115584931 - AluSq SINE Alu -18 295 1 183 42 0 0 chr4 86743428 86743452 -115584895 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1689 156 3 7 chr4 86743457 86743739 -115584608 - AluJb SINE Alu -31 281 1 3557 159 38 5 chr4 86743793 86744401 -115583946 - MER6 DNA MER2_type 0 865 238 201 296 49 25 chr4 86744909 86744990 -115583357 + L2 LINE L2 3184 3266 -47 574 191 63 8 chr4 86745291 86745417 -115582930 + FLAM_A SINE Alu 1 133 0 186 326 221 0 chr4 86745532 86745618 -115582729 + L2 LINE L2 3179 3283 -30 1301 146 14 5 chr4 86746152 86746372 -115581975 - AluSg/x SINE Alu -16 294 73 338 348 9 9 chr4 86746580 86746695 -115581652 + L2 LINE L2 3144 3258 -14 1616 148 30 127 chr4 86747259 86747373 -115580974 + MLT1B LTR MaLR 1 124 -266 2210 93 3 0 chr4 86747373 86747662 -115580685 + AluSx SINE Alu 1 290 -22 1616 148 30 127 chr4 86747662 86747979 -115580368 + MLT1B LTR MaLR 124 390 0 792 204 54 23 chr4 86748043 86748264 -115580083 - L1MEc LINE L1 -3896 2500 2273 779 156 151 11 chr4 86748273 86748452 -115579895 - MER3 DNA MER1_type -5 204 1 2634 225 49 18 chr4 86748453 86748860 -115579487 - L1MEc LINE L1 -4122 2274 1881 1899 146 7 3 chr4 86748860 86749169 -115579178 - AluSq SINE Alu -3 310 1 2634 225 49 18 chr4 86749169 86749534 -115578813 - L1MEc LINE L1 -4515 1881 1478 1384 167 174 27 chr4 86749538 86749758 -115578589 + MER2 DNA MER2_type 2 279 -66 2055 121 0 10 chr4 86749758 86750056 -115578291 - AluSx SINE Alu -11 301 7 1384 167 174 27 chr4 86750056 86750134 -115578213 + MER2 DNA MER2_type 279 344 -1 2642 239 33 9 chr4 86750144 86750933 -115577414 - L1MEc LINE L1 -4923 1473 666 1353 108 0 0 chr4 86750935 86751120 -115577227 - AluSx SINE Alu -127 185 1 1275 201 44 15 chr4 86751123 86751397 -115576950 - L1MEc LINE L1 -5758 638 357 1380 241 60 3 chr4 86751442 86751794 -115576553 - L1MEc LINE L1 -6014 382 11 211 304 11 22 chr4 86752535 86752627 -115575720 + GA-rich Low_complexity Low_complexity 2 92 0 180 111 0 0 chr4 86753474 86753501 -115574846 + (TGGGGG)n Simple_repeat Simple_repeat 2 28 0 2181 112 7 0 chr4 86753575 86753880 -115574467 + AluSx SINE Alu 1 307 -5 551 299 7 7 chr4 86754656 86754793 -115573554 + MIR SINE MIR 4 140 -122 2222 95 3 0 chr4 86754801 86755096 -115573251 + AluSx SINE Alu 1 296 -16 288 109 0 0 chr4 86755710 86755756 -115572591 - L1MB4 LINE L1 -2 6178 6133 983 103 0 0 chr4 86755758 86755904 -115572443 - AluSg/x SINE Alu -2 310 165 404 247 11 0 chr4 86756019 86756112 -115572235 - AluJ/FLAM SINE Alu -207 95 2 1113 206 59 4 chr4 86756557 86756810 -115571537 - AluSx SINE Alu -19 293 27 1068 75 7 0 chr4 86757241 86757387 -115570960 - AluY SINE Alu -10 301 155 741 256 111 49 chr4 86757711 86758101 -115570246 - MLT1H LTR MaLR 0 549 69 1869 111 33 42 chr4 86758101 86758408 -115569939 + AluJb SINE Alu 1 304 -8 741 256 111 49 chr4 86758408 86758429 -115569918 - MLT1H LTR MaLR -480 69 51 224 390 0 0 chr4 86759912 86760012 -115568335 - MIR3 SINE MIR -3 205 106 1274 221 85 76 chr4 86760733 86760855 -115567492 + MLT1D LTR MaLR 1 120 -385 2236 84 7 0 chr4 86760855 86761151 -115567196 - AluSp SINE Alu -15 298 1 1274 221 85 76 chr4 86761151 86761475 -115566872 + MLT1D LTR MaLR 120 451 -54 384 270 48 8 chr4 86761614 86761740 -115566607 + MIR SINE MIR 28 158 -104 402 233 189 19 chr4 86761749 86761908 -115566439 - MER46C DNA MER2_type -10 328 143 379 223 53 21 chr4 86762010 86762104 -115566243 + MIR SINE MIR 156 252 -10 318 364 82 22 chr4 86762154 86762423 -115565924 + L2 LINE L2 2938 3222 -50 2186 100 3 7 chr4 86763116 86763425 -115564922 + AluSx SINE Alu 1 308 -4 1672 192 108 8 chr4 86763509 86763869 -115564478 + MSTD LTR MaLR 1 396 0 357 302 20 27 chr4 86764977 86765126 -115563221 + MER5A DNA MER1_type 20 167 -22 * 537 281 13 7 chr4 86764995 86765148 -115563199 - MER5A DNA MER1_type -25 164 11 239 212 106 30 chr4 86765324 86765390 -115562957 + L1MC5 LINE L1 7733 7803 -158 1768 148 35 0 chr4 86766902 86767192 -115561155 - AluJb SINE Alu -12 300 1 678 281 120 30 chr4 86768202 86768636 -115559711 - L1ME4a LINE L1 -12 6109 5637 2105 97 35 0 chr4 86768666 86768954 -115559393 - AluSx SINE Alu -14 298 1 705 222 222 6 chr4 86768981 86769161 -115559186 + MER20 DNA MER1_type 1 219 0 375 196 165 21 chr4 86769855 86769952 -115558395 - L2 LINE L2 0 3313 3203 321 253 44 70 chr4 86770040 86770198 -115558149 + MLT1H LTR MaLR 192 345 -204 251 261 41 30 chr4 86770225 86770328 -115558019 + MLT1H1 LTR MaLR 446 555 0 254 229 0 0 chr4 86770356 86770404 -115557943 - MLT1K LTR MaLR -395 193 146 469 314 49 5 chr4 86770502 86770687 -115557660 + L2 LINE L2 2342 2534 -780 378 367 28 17 chr4 86770714 86770894 -115557453 + L2 LINE L2 3001 3182 -90 329 315 47 16 chr4 86771168 86771295 -115557052 + MIR SINE MIR 79 209 -53 550 239 85 0 chr4 86771520 86771650 -115556697 - MIR SINE MIR -10 252 112 325 381 22 65 chr4 86771656 86772026 -115556321 + L2 LINE L2 2403 2756 -558 1041 165 125 22 chr4 86772247 86772519 -115555828 + MER33 DNA MER1_type 3 302 -22 4866 174 29 35 chr4 86772566 86774340 -115554007 + L1MB2 LINE L1 4411 6167 -4 710 127 36 9 chr4 86774784 86774894 -115553453 - FLAM_C SINE Alu -29 114 2 1711 169 18 0 chr4 86774923 86775202 -115553145 - AluJb SINE Alu -28 284 1 23 54 0 0 chr4 86775754 86775791 -115552556 + AT_rich Low_complexity Low_complexity 1 37 0 1104 74 80 6 chr4 86776580 86776743 -115551604 - L1PA11 LINE L1 0 6174 6000 312 242 8 73 chr4 86776747 86776871 -115551476 - MER112 DNA MER1_type -6 254 139 917 284 4 0 chr4 86776903 86777142 -115551205 + MIR SINE MIR 2 241 -21 1253 211 87 43 chr4 86777816 86778209 -115550138 + LTR1 LTR ERV1 1 410 -375 250 82 41 20 chr4 86778214 86778263 -115550084 + LTR1B LTR ERV1 777 826 0 585 230 119 49 chr4 86778282 86778508 -115549839 - MIR SINE MIR -16 246 5 * 596 272 109 20 chr4 86778506 86778708 -115549639 + MIR SINE MIR 25 244 -18 757 291 48 72 chr4 86780066 86780592 -115547755 - MER34 LTR ERV1 -29 513 1 228 282 14 0 chr4 86780953 86781024 -115547323 - LTR47A LTR ERVL -196 256 185 651 290 45 5 chr4 86781024 86781248 -115547099 + MIR SINE MIR 30 262 0 218 323 58 103 chr4 86782076 86782231 -115546116 + L2 LINE L2 3125 3272 0 1139 123 0 0 chr4 86782285 86782439 -115545908 - FRAM SINE Alu -25 151 1 2742 165 52 31 chr4 86783481 86784034 -115544313 + MER34B LTR ERV1 1 565 0 2201 102 27 3 chr4 86784850 86785144 -115543203 + AluSx SINE Alu 1 301 -11 889 242 115 79 chr4 86785886 86785912 -115542435 + MLT1L LTR MaLR 112 136 -479 1648 156 7 111 chr4 86785912 86786079 -115542268 + MLT1A1 LTR MaLR 1 184 -181 1568 188 0 28 chr4 86786079 86786367 -115541980 + AluJo SINE Alu 1 280 -32 180 0 0 0 chr4 86786370 86786390 -115541957 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 1648 156 7 111 chr4 86786390 86786623 -115541724 + MLT1A1 LTR MaLR 186 363 -2 889 242 115 79 chr4 86786623 86786724 -115541623 + MLT1L LTR MaLR 136 232 -383 1933 144 10 13 chr4 86786724 86787022 -115541325 - AluSx SINE Alu -15 297 1 889 242 115 79 chr4 86787022 86787372 -115540975 + MLT1L LTR MaLR 232 607 -8 498 161 215 13 chr4 86787737 86787886 -115540461 - MER5A DNA MER1_type -2 187 9 328 319 11 54 chr4 86789084 86789269 -115539078 - MER5B DNA MER1_type -1 177 1 2350 86 0 3 chr4 86789290 86789581 -115538766 + AluSc SINE Alu 1 290 -19 2186 103 3 20 chr4 86790294 86790594 -115537753 + AluSp SINE Alu 1 295 -18 1652 167 3 40 chr4 86790748 86791047 -115537300 + AluJo SINE Alu 3 290 -22 288 270 82 12 chr4 86791085 86791211 -115537136 - MIR SINE MIR -65 143 14 566 259 51 34 chr4 86791946 86792182 -115536165 - MIR SINE MIR 0 262 23 2493 53 3 10 chr4 86792968 86793268 -115535079 - AluY SINE Alu -13 298 1 1782 122 94 17 chr4 86793865 86794153 -115534194 + AluJo SINE Alu 1 310 -2 2546 64 0 0 chr4 86794306 86794601 -115533746 + AluY SINE Alu 1 295 -16 282 272 94 56 chr4 86796200 86796380 -115531967 - MIR SINE MIR -56 206 20 304 217 43 0 chr4 86797158 86797227 -115531120 - MER5A DNA MER1_type -56 133 62 457 269 38 75 chr4 86797393 86797579 -115530768 + MER8 DNA MER2_type 1 179 -60 370 206 0 0 chr4 86797554 86797617 -115530730 + MER2 DNA MER2_type 282 344 -1 * 740 156 37 37 chr4 86797699 86797834 -115530513 + AluJo SINE Alu 2 136 -176 287 200 33 0 chr4 86797846 86797906 -115530441 + MIR SINE MIR 20 81 -181 2047 134 145 8 chr4 86798061 86798427 -115529920 + MSTA LTR MaLR 1 416 -12 273 115 64 90 chr4 86798391 86798469 -115529878 + LTR66 LTR ERVL 363 438 -172 * 2474 69 50 14 chr4 86800029 86800393 -115527954 + HERVH LTR ERV1 7337 7713 0 2114 114 78 55 chr4 86800393 86800831 -115527516 + LTR7 LTR ERV1 1 448 -2 784 182 28 0 chr4 86801581 86801724 -115526623 - L1MCa LINE L1 -5337 1089 943 3858 129 86 2 chr4 86801724 86801943 -115526404 - HSMAR2 DNA Mariner -1 1301 1102 1955 105 0 4 chr4 86801943 86802210 -115526137 - AluY SINE Alu -13 298 33 3858 129 86 2 chr4 86802210 86802617 -115525730 - HSMAR2 DNA Mariner -200 1102 622 1897 108 21 4 chr4 86802620 86802919 -115525428 - AluSq SINE Alu 0 304 1 252 225 38 25 chr4 86803062 86803142 -115525205 + MLT1L LTR MaLR 1 81 -534 1164 238 53 0 chr4 86803225 86803506 -115524841 - L1M4 LINE L1 -902 5244 4949 572 165 0 37 chr4 86803507 86803616 -115524731 - AluJb SINE Alu 0 312 208 331 192 14 14 chr4 86804419 86804492 -115523855 + MLT1D LTR MaLR 422 494 -11 2623 72 3 3 chr4 86804580 86804915 -115523432 - L1PA8A LINE L1 -87 6044 5710 848 231 29 0 chr4 86805161 86805334 -115523013 - MER45A DNA AcHobo 0 178 1 580 395 64 18 chr4 86805667 86806212 -115522135 - L2 LINE L2 -560 2754 2185 928 257 130 39 chr4 86806249 86806833 -115521514 + L1ME3 LINE L1 5263 5899 -263 229 119 24 0 chr4 86806855 86806897 -115521450 - MADE1 DNA Mariner -37 43 1 9093 154 14 9 chr4 86807306 86808802 -115519545 + Tigger7 DNA MER2_type 985 2487 0 287 239 0 42 chr4 86808802 86808873 -115519474 - L2 LINE L2 -18 3295 3228 24 0 0 0 chr4 86809011 86809035 -115519312 + AT_rich Low_complexity Low_complexity 1 24 0 337 294 70 28 chr4 86809147 86809290 -115519057 - MIR SINE MIR 0 262 114 303 243 184 15 chr4 86810235 86810371 -115517976 + MIR3 SINE MIR 37 195 -13 2143 25 0 0 chr4 86810716 86810961 -115517386 - L1PA3 LINE L1 0 6155 5911 1855 149 7 3 chr4 86811027 86811315 -115517032 + AluJo SINE Alu 1 289 -23 337 83 0 33 chr4 86811315 86811375 -115516972 + (GGGGA)n Simple_repeat Simple_repeat 4 61 0 2072 110 36 0 chr4 86811398 86811679 -115516668 - AluSx SINE Alu -21 291 1 491 261 106 77 chr4 86861803 86862226 -115466121 + L1MEd LINE L1 740 1149 -4980 1698 163 10 27 chr4 86862226 86862527 -115465820 + AluJo SINE Alu 1 296 -16 491 261 106 77 chr4 86862527 86862611 -115465736 + L1MEd LINE L1 1149 1229 -4900 1941 214 99 57 chr4 86862611 86863138 -115465209 + MLT1H LTR MaLR 1 549 0 491 261 106 77 chr4 86863138 86863211 -115465136 + L1MEd LINE L1 1229 1333 -4796 898 51 34 0 chr4 86863220 86863337 -115465010 + AluSc SINE Alu 1 121 -188 297 171 86 19 chr4 86863437 86863542 -115464805 - AluSq/x SINE Alu -190 112 1 1308 186 24 4 chr4 86863911 86864158 -115464189 - AluJo SINE Alu 0 312 61 1761 147 3 33 chr4 86864793 86865099 -115463248 + AluJo SINE Alu 1 297 -15 2272 115 0 10 chr4 86865164 86865477 -115462870 - AluSg SINE Alu 0 310 1 1800 156 10 7 chr4 86865767 86866056 -115462291 + AluJo SINE Alu 1 290 -22 440 133 0 0 chr4 86866081 86866141 -115462206 - U6 snRNA snRNA -6 101 42 2155 107 0 13 chr4 86866278 86866577 -115461770 + AluSx SINE Alu 1 295 -17 2836 126 53 9 chr4 86866641 86867095 -115461252 - Tigger2 DNA MER2_type 0 2718 2245 524 126 27 9 chr4 86867097 86867208 -115461139 + CT-rich Low_complexity Low_complexity 3 115 0 723 167 50 25 chr4 86867216 86867336 -115461011 - FLAM_A SINE Alu -17 125 3 1668 133 84 13 chr4 86867336 86867644 -115460703 - Tigger2 DNA MER2_type -482 2236 1907 242 390 0 0 chr4 86867702 86867784 -115460563 + T-rich Low_complexity Low_complexity 1 82 0 190 320 174 32 chr4 86868207 86868488 -115459859 - L2 LINE L2 -1092 2222 1902 1536 260 102 16 chr4 86868511 86869011 -115459336 + L2 LINE L2 8 550 -2764 24 32 0 0 chr4 86869341 86869372 -115458975 + AT_rich Low_complexity Low_complexity 1 31 0 1640 110 110 8 chr4 86869387 86869651 -115458696 - AluSx SINE Alu -21 291 1 236 56 0 28 chr4 86869677 86869713 -115458634 - LTR7 LTR ERV1 -38 412 378 294 289 216 10 chr4 86869754 86870045 -115458302 + L1M4 LINE L1 3820 4170 -1976 936 113 8 0 chr4 86870049 86870173 -115458174 + AluSq/x SINE Alu 5 129 -184 2015 126 41 0 chr4 86870310 86870604 -115457743 - AluSx SINE Alu -6 306 1 2211 97 7 0 chr4 86870659 86870948 -115457399 + AluSc SINE Alu 17 307 -2 1678 109 0 8 chr4 86871726 86871964 -115456383 - AluSp SINE Alu -2 311 76 422 237 141 13 chr4 86872279 86872435 -115455912 - MER5B DNA MER1_type -1 177 2 860 239 11 0 chr4 86872542 86872718 -115455629 + MER5B DNA MER1_type 1 178 0 203 250 21 0 chr4 86873078 86873126 -115455221 + L2 LINE L2 3186 3234 -38 377 263 167 26 chr4 86873678 86873717 -115454630 + MER58C DNA MER1_type 38 70 -2350 2093 136 7 0 chr4 86873717 86874025 -115454322 - AluSx SINE Alu -2 310 1 377 263 167 26 chr4 86874025 86874141 -115454206 + MER58C DNA MER1_type 70 215 0 1648 236 87 23 chr4 86874154 86874512 -115453835 - L1M4 LINE L1 -3092 3054 2644 2250 101 0 7 chr4 86874512 86874809 -115453538 - AluSx SINE Alu -17 295 1 1648 236 87 23 chr4 86874809 86875026 -115453321 - L1M4 LINE L1 -3502 2644 2442 1613 172 0 31 chr4 86875118 86875409 -115452938 + AluJo SINE Alu 1 282 -30 225 22 0 67 chr4 86875423 86875468 -115452879 + (TTTAA)n Simple_repeat Simple_repeat 3 44 0 2174 110 0 16 chr4 86875599 86875908 -115452439 - AluSg SINE Alu -6 304 1 1923 86 108 0 chr4 86875973 86876242 -115452105 + AluSp SINE Alu 1 298 -15 2210 98 7 0 chr4 86876514 86876810 -115451537 - AluSg SINE Alu -12 298 1 850 55 0 9 chr4 86876823 86876933 -115451414 - AluSg/x SINE Alu -6 303 195 2703 135 70 0 chr4 86877615 86878015 -115450332 + MSTC LTR MaLR 1 428 0 21 0 0 0 chr4 86878912 86878933 -115449414 + AT_rich Low_complexity Low_complexity 1 21 0 2470 135 125 78 chr4 86879453 86879980 -115448367 - MLT2B3 LTR ERVL 0 554 3 439 237 256 0 chr4 86880018 86880174 -115448173 + MLT1J LTR MaLR 1 196 -315 2057 147 124 38 chr4 86880182 86880503 -115447844 + MSTA LTR MaLR 1 364 -64 2572 37 0 3 chr4 86880503 86880801 -115447546 - AluY SINE Alu -14 297 1 2057 147 124 38 chr4 86880801 86880873 -115447474 + MSTA LTR MaLR 364 428 0 2097 122 16 3 chr4 86880875 86881178 -115447169 - AluSx SINE Alu -5 307 1 796 273 180 17 chr4 86881257 86881612 -115446735 + L1MC4a LINE L1 5439 5869 -1939 2156 147 78 64 chr4 86881612 86881985 -115446362 - MSTC LTR MaLR 0 428 47 2383 81 3 0 chr4 86881985 86882283 -115446064 - AluSp SINE Alu -9 304 6 2156 147 78 64 chr4 86882283 86882331 -115446016 - MSTC LTR MaLR -381 47 1 796 273 180 17 chr4 86882331 86882381 -115445966 + L1MC4a LINE L1 5869 5910 -1898 24 0 0 0 chr4 86882394 86882418 -115445929 + AT_rich Low_complexity Low_complexity 1 24 0 277 289 7 99 chr4 86882476 86882533 -115445814 + MER94 DNA DNA 4 65 -69 2182 52 7 11 chr4 86882533 86882839 -115445508 - AluY SINE Alu 0 305 1 277 289 7 99 chr4 86882839 86882922 -115445425 + MER94 DNA DNA 65 132 -2 277 214 191 0 chr4 86882958 86883042 -115445305 + MER5C DNA MER1_type 225 324 0 209 229 9 76 chr4 86883984 86884089 -115444258 + (CCCCG)n Simple_repeat Simple_repeat 2 99 0 809 150 0 0 chr4 86885450 86885570 -115442777 + FLAM_C SINE Alu 6 125 -18 2195 115 10 0 chr4 86885605 86885900 -115442447 + AluSx SINE Alu 1 298 -14 414 262 132 68 chr4 86885909 86886333 -115442014 + L1M4 LINE L1 3758 4208 -1938 2446 75 0 3 chr4 86886344 86886649 -115441698 + AluSg SINE Alu 1 304 -6 2229 110 7 7 chr4 86886662 86886972 -115441375 + AluSg SINE Alu 1 310 0 1756 123 29 44 chr4 86886988 86887304 -115441043 - AluSx SINE Alu -1 311 1 1076 160 38 61 chr4 86887713 86887786 -115440561 + AluJb SINE Alu 40 113 -199 2543 66 3 0 chr4 86887786 86888089 -115440258 - AluY SINE Alu -7 304 1 1076 160 38 61 chr4 86888089 86888227 -115440120 + AluJb SINE Alu 113 246 -66 817 206 24 18 chr4 86888270 86888440 -115439907 - AluJo SINE Alu -141 171 1 3726 225 110 19 chr4 86888440 86889627 -115438720 + L1ME2 LINE L1 3195 4490 -1656 2369 191 18 70 chr4 86889636 86889664 -115438683 + LTR40a LTR ERVL 3 31 -488 980 153 70 13 chr4 86889664 86889821 -115438526 - FRAM SINE Alu 0 166 1 2369 191 18 70 chr4 86889821 86890053 -115438294 + LTR40a LTR ERVL 31 273 -246 2558 51 0 0 chr4 86890053 86890349 -115437998 + AluY SINE Alu 1 296 -15 2369 191 18 70 chr4 86890349 86890632 -115437715 + LTR40a LTR ERVL 273 519 0 500 227 102 64 chr4 86890633 86890897 -115437450 + HERVL40 LTR ERVL 1 274 -5256 1359 256 76 15 chr4 86890917 86891312 -115437035 + HERVL40 LTR ERVL 942 1360 -4170 344 286 74 34 chr4 86891348 86891523 -115436824 + HERVL40 LTR ERVL 1430 1611 -3919 2597 187 22 93 chr4 86891584 86891633 -115436714 + L1ME2 LINE L1 5262 5313 -851 2383 88 0 0 chr4 86891633 86891929 -115436418 - AluY SINE Alu -15 296 1 2597 187 22 93 chr4 86891929 86892644 -115435703 + L1ME2 LINE L1 5313 5972 -192 2547 70 12 6 chr4 86892633 86892975 -115435372 + L1PA8A LINE L1 5332 5675 -456 * 1495 179 46 0 chr4 86893390 86893653 -115434694 - AluSx SINE Alu -37 275 1 8860 110 39 2 chr4 86893890 86895144 -115433203 + HSMAR2 DNA Mariner 2 1302 0 1535 206 0 3 chr4 86895488 86895775 -115432572 + AluJb SINE Alu 5 290 -22 4266 141 72 28 chr4 86895951 86896822 -115431525 + Tigger6b DNA MER2_type 1 1022 -575 183 80 0 0 chr4 86898619 86898644 -115429703 + (T)n Simple_repeat Simple_repeat 1 25 0 707 96 39 0 chr4 86898745 86898849 -115429498 - AluSq/x SINE Alu -203 109 2 4440 124 40 13 chr4 86898979 86899010 -115429337 + L1PA16 LINE L1 5463 5492 -674 1886 131 44 10 chr4 86899010 86899307 -115429040 + AluSx SINE Alu 1 307 -5 4440 124 40 13 chr4 86899307 86899822 -115428525 + L1PA16 LINE L1 5492 6033 -133 2227 122 0 0 chr4 86899822 86900133 -115428214 + AluY SINE Alu 1 311 0 4440 124 40 13 chr4 86900133 86900268 -115428079 + L1PA16 LINE L1 6033 6163 -3 2161 110 3 0 chr4 86900512 86900840 -115427507 + AluSq SINE Alu 1 313 0 193 327 53 44 chr4 86901026 86901139 -115427208 + MIR SINE MIR 20 133 -75 1816 149 14 14 chr4 86901260 86901556 -115426791 + AluSx SINE Alu 1 296 -16 2211 71 0 68 chr4 86902023 86902345 -115426002 + AluY SINE Alu 1 300 -11 22 0 0 0 chr4 86902569 86902591 -115425756 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 86902706 86902727 -115425620 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 86904442 86904466 -115423881 + GC_rich Low_complexity Low_complexity 1 24 0 2269 109 0 3 chr4 86906352 86906646 -115421701 - AluSx SINE Alu -19 293 1 250 56 0 0 chr4 86906999 86907035 -115421312 - Alu SINE Alu -5 297 262 963 132 0 121 chr4 86907035 86907071 -115421276 - AluJb SINE Alu -152 160 121 1865 162 0 22 chr4 86907071 86907386 -115420961 - AluJb SINE Alu -4 308 1 963 132 0 121 chr4 86907386 86907531 -115420816 - AluJb SINE Alu -191 121 1 2120 141 0 6 chr4 86907716 86908029 -115420318 + AluJo SINE Alu 1 311 -1 25 31 0 0 chr4 86908165 86908197 -115420150 + AT_rich Low_complexity Low_complexity 1 32 0 2375 86 0 0 chr4 86908645 86908946 -115419401 + AluSx SINE Alu 1 301 -11 2233 69 14 4 chr4 86908978 86909282 -115419065 + AluSg SINE Alu 1 307 0 325 242 88 11 chr4 86909346 86909437 -115418910 - L2 LINE L2 -16 3297 3200 489 216 156 11 chr4 86910397 86910534 -115417813 + MIR SINE MIR 1 143 -65 315 137 0 0 chr4 86910612 86910663 -115417684 - L1P LINE L1 -814 5354 5304 2637 163 29 12 chr4 86910667 86911152 -115417195 + L1PA16 LINE L1 5390 5882 -284 187 344 108 21 chr4 86911320 86911413 -115416934 - MIR SINE MIR -87 121 21 1526 150 19 70 chr4 86911734 86912048 -115416299 + AluJb SINE Alu 1 298 -14 2372 81 7 3 chr4 86912200 86912508 -115415839 + AluY SINE Alu 1 309 -2 662 205 229 48 chr4 86912567 86912777 -115415570 - MIR SINE MIR -1 261 14 1987 112 0 30 chr4 86913088 86913111 -115415236 - AluSg SINE Alu -8 302 280 201 39 0 0 chr4 86913111 86913137 -115415210 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1987 112 0 30 chr4 86913137 86913408 -115414939 - AluSg SINE Alu -30 280 17 3179 86 0 2 chr4 86914545 86914963 -115413384 + L1PA8A LINE L1 5694 6110 -21 2185 115 0 0 chr4 86915091 86915378 -115412969 - AluSx SINE Alu -25 287 1 637 214 214 0 chr4 86915406 86915579 -115412768 + MIR SINE MIR 47 256 -6 1970 110 0 7 chr4 86915660 86915932 -115412415 - AluSc SINE Alu -6 303 34 2307 104 3 3 chr4 86915970 86916277 -115412070 + AluSp SINE Alu 1 307 -6 2264 95 0 0 chr4 86916545 86916829 -115411518 + AluSx SINE Alu 1 284 -28 195 337 22 43 chr4 86918767 86918859 -115409488 + MIR SINE MIR 26 115 -147 2334 85 0 16 chr4 86919073 86919378 -115408969 + AluSq SINE Alu 1 300 -13 1820 157 6 16 chr4 86919855 86920168 -115408179 + AluJb SINE Alu 2 311 -1 1573 161 36 11 chr4 86920337 86920635 -115407712 - AluJb SINE Alu 0 307 3 536 191 0 0 chr4 86922334 86922418 -115405929 + FRAM SINE Alu 60 143 -33 2314 87 10 13 chr4 86922419 86922729 -115405618 - AluSx SINE Alu -3 309 1 21 0 0 0 chr4 86923194 86923215 -115405132 + AT_rich Low_complexity Low_complexity 1 21 0 781 252 152 0 chr4 86923745 86923955 -115404392 - MIR SINE MIR 0 262 21 23 0 0 0 chr4 86923958 86923981 -115404366 + AT_rich Low_complexity Low_complexity 1 23 0 391 367 116 7 chr4 86924162 86924456 -115403891 + L2 LINE L2 797 1122 -2192 276 271 82 0 chr4 86924576 86924661 -115403686 + L2 LINE L2 1120 1211 -2103 2347 76 0 0 chr4 86925809 86926097 -115402250 - AluSg SINE Alu -22 288 1 189 333 28 28 chr4 86926219 86926291 -115402056 + L2 LINE L2 2690 2761 -553 2357 80 0 40 chr4 86926770 86927096 -115401251 - AluSq SINE Alu 0 313 1 1196 138 4 58 chr4 86927133 86927176 -115401171 - L1MB3 LINE L1 -7 6176 6132 1884 132 81 0 chr4 86927176 86927449 -115400898 - AluSx SINE Alu -17 295 1 1196 138 4 58 chr4 86927449 86927645 -115400702 - L1MB3 LINE L1 -51 6132 5950 975 129 0 0 chr4 86927645 86927785 -115400562 - AluSg/x SINE Alu -9 301 162 2249 102 0 0 chr4 86927785 86928070 -115400277 - AluSx SINE Alu -27 285 1 560 152 36 0 chr4 86928080 86928192 -115400155 - L1MB3 LINE L1 -286 5897 5782 2415 88 0 0 chr4 86928288 86928596 -115399751 - AluY SINE Alu -3 308 1 1929 89 114 4 chr4 86929553 86929824 -115398523 - AluSg1 SINE Alu -8 301 1 1260 154 0 20 chr4 86930251 86930472 -115397875 + AluJo SINE Alu 85 301 0 453 295 144 40 chr4 86930627 86930905 -115397442 - L3 LINE CR1 -5 1572 1266 32 26 0 0 chr4 86930975 86931014 -115397333 + AT_rich Low_complexity Low_complexity 1 39 0 653 264 61 68 chr4 86931014 86931340 -115397007 - MLT1I LTR MaLR -85 324 1 352 304 167 6 chr4 86931344 86931512 -115396835 - L3 LINE CR1 -312 1265 1071 261 244 193 30 chr4 86931675 86931810 -115396537 + MIR SINE MIR 1 157 -105 637 66 0 184 chr4 86933321 86933457 -115394890 + FLAM_C SINE Alu 1 111 -32 357 236 55 131 chr4 86933676 86933875 -115394472 + MIR SINE MIR 79 262 0 802 252 194 19 chr4 86934157 86934621 -115393726 - MLT1H LTR MaLR -4 545 1 184 271 100 0 chr4 86934968 86935038 -115393309 + L2 LINE L2 3237 3313 0 * 200 301 24 36 chr4 86935036 86935119 -115393228 - MIR SINE MIR -178 84 3 203 139 93 0 chr4 86935325 86935368 -115392979 + L3 LINE CR1 1531 1577 0 280 224 106 63 chr4 86935439 86935632 -115392715 - MIR SINE MIR -42 220 23 2234 99 0 16 chr4 86935823 86936137 -115392210 - AluSc SINE Alu 0 309 1 2055 82 89 4 chr4 86936173 86936454 -115391893 - AluSx SINE Alu -7 305 1 2282 46 42 7 chr4 86936462 86936770 -115391577 - AluY SINE Alu 0 311 1 502 287 65 28 chr4 86936826 86937073 -115391274 - MIR SINE MIR -2 260 5 296 23 70 0 chr4 86937115 86937158 -115391189 + T-rich Low_complexity Low_complexity 5 50 0 793 272 43 30 chr4 86938062 86938297 -115390050 - MIR SINE MIR -21 241 4 377 293 35 9 chr4 86938455 86938571 -115389776 + MIR SINE MIR 23 141 -121 299 291 31 43 chr4 86938676 86938934 -115389413 + HAL1b LINE L1 679 933 -415 513 307 61 42 chr4 86939434 86939812 -115388535 + L1M4 LINE L1 2345 2729 -3417 1191 243 55 3 chr4 86939820 86940145 -115388202 + L1MC1 LINE L1 5985 6326 -7 260 266 32 32 chr4 86940289 86940413 -115387934 - L1MC4a LINE L1 -1122 6686 6563 1868 158 3 23 chr4 86940678 86940981 -115387366 - AluJb SINE Alu -15 297 1 2501 73 7 0 chr4 86941009 86941311 -115387036 - AluSc SINE Alu -5 304 1 906 128 7 7 chr4 86941668 86941816 -115386531 - MSTC LTR MaLR -280 148 1 1406 186 12 12 chr4 86941822 86942069 -115386278 - AluJo SINE Alu -61 251 5 1902 151 0 3 chr4 86942128 86942413 -115385934 + AluJo SINE Alu 16 299 -13 1061 229 47 82 chr4 86942413 86942484 -115385863 + L1MCa LINE L1 899 971 -5455 1771 153 3 50 chr4 86942484 86942804 -115385543 + AluJo SINE Alu 1 305 -7 1061 229 47 82 chr4 86942804 86942851 -115385496 + L1MCa LINE L1 971 1018 -5408 2299 74 44 0 chr4 86942851 86943149 -115385198 + AluY SINE Alu 1 311 0 1061 229 47 82 chr4 86943149 86943375 -115384972 + L1MCa LINE L1 1018 1217 -5209 2183 171 55 22 chr4 86943375 86943753 -115384594 + MSTB1 LTR MaLR 1 396 -36 2447 84 0 0 chr4 86943753 86944049 -115384298 - AluY SINE Alu -15 296 1 2183 171 55 22 chr4 86944049 86944086 -115384261 + MSTB1 LTR MaLR 396 430 -2 1061 229 47 82 chr4 86944086 86944337 -115384010 + L1MCa LINE L1 1217 1475 -4951 819 204 0 36 chr4 86944337 86944504 -115383843 - AluJo/FRAM SINE Alu -18 294 134 2196 127 0 0 chr4 86944504 86944804 -115383543 - AluSq SINE Alu -13 300 1 232 220 102 76 chr4 86944804 86944922 -115383425 + L1MCa LINE L1 1464 1584 -4842 2220 90 20 59 chr4 86945123 86945174 -115383173 - THE1C LTR MaLR 0 375 324 5495 74 19 3 chr4 86945174 86945928 -115382419 - L1PA8 LINE L1 0 6172 5407 2220 90 20 59 chr4 86945928 86946266 -115382081 - THE1C LTR MaLR -51 324 1 428 174 134 81 chr4 86946412 86946561 -115381786 - MER58C DNA MER1_type -9 206 50 474 202 18 35 chr4 86946632 86946746 -115381601 - MER58C DNA MER1_type -103 112 1 1905 127 38 3 chr4 86946922 86947213 -115381134 - AluSq SINE Alu -12 301 1 2220 79 24 7 chr4 86947633 86947923 -115380424 + AluSc SINE Alu 1 295 -14 328 283 7 41 chr4 86948042 86948187 -115380160 + MLT1H LTR MaLR 47 186 -363 2063 138 3 10 chr4 86948223 86948528 -115379819 + AluSx SINE Alu 1 303 -9 315 186 21 52 chr4 86948667 86948764 -115379583 + MLT1H LTR MaLR 431 524 -25 380 213 12 0 chr4 86949338 86949418 -115378929 - MER46C DNA MER2_type -3 335 255 508 209 90 0 chr4 86949466 86949600 -115378747 - L1ME2 LINE L1 -2 6162 6017 2495 64 0 0 chr4 86949646 86949944 -115378403 - AluY SINE Alu -12 299 2 587 253 43 11 chr4 86949944 86950130 -115378217 - MER46C DNA MER2_type -146 192 1 214 324 0 42 chr4 86950293 86950364 -115377983 + L2 LINE L2 3193 3260 -12 2378 92 0 0 chr4 86950408 86950711 -115377636 - AluSq SINE Alu -10 303 1 232 169 108 15 chr4 86950815 86950849 -115377498 + MER33 DNA MER1_type 7 36 -2549 1862 157 0 24 chr4 86950849 86951143 -115377204 - AluJo SINE Alu -17 295 9 232 169 108 15 chr4 86951143 86951173 -115377174 + MER33 DNA MER1_type 36 77 -247 * 684 168 30 8 chr4 86951148 86951279 -115377068 - MER3 DNA MER1_type -29 180 47 1878 112 54 11 chr4 86951655 86951932 -115376415 - AluSx SINE Alu -23 289 1 233 140 20 0 chr4 86951997 86952047 -115376300 + AluSq/x SINE Alu 83 133 -169 718 184 9 7 chr4 86952074 86952294 -115376053 + AluJb SINE Alu 1 283 -29 871 117 0 17 chr4 86952485 86952605 -115375742 - FLAM_C SINE Alu -15 118 1 299 244 87 71 chr4 86953483 86953610 -115374737 + L2 LINE L2 3143 3271 -1 618 250 39 44 chr4 86953943 86954147 -115374200 + MLT1J2 LTR MaLR 9 211 -239 1617 195 91 96 chr4 86954219 86954362 -115373985 - Charlie2 DNA MER1_type -126 2736 2594 2028 132 3 25 chr4 86954362 86954681 -115373666 - AluSx SINE Alu 0 312 1 1617 195 91 96 chr4 86954681 86954903 -115373444 - Charlie2 DNA MER1_type -268 2594 2373 1484 206 30 20 chr4 86954903 86955204 -115373143 + AluJo SINE Alu 9 312 0 1617 195 91 96 chr4 86955204 86955769 -115372578 - Charlie2 DNA MER1_type -489 2373 1809 1262 176 125 8 chr4 86955850 86956106 -115372241 - AluJo SINE Alu -18 294 9 1417 158 9 5 chr4 86956119 86956341 -115372006 - AluJb SINE Alu -19 293 71 1900 156 3 3 chr4 86956456 86956745 -115371602 + AluJb SINE Alu 1 289 -23 2192 99 10 10 chr4 86957351 86957655 -115370692 + AluSx SINE Alu 1 304 -8 777 213 0 0 chr4 86957774 86957901 -115370446 - FLAM_A SINE Alu -6 127 1 22 35 0 0 chr4 86958088 86958117 -115370230 + AT_rich Low_complexity Low_complexity 1 29 0 2114 266 56 35 chr4 86958141 86959556 -115368791 + L1MCa LINE L1 872 2485 -4122 403 278 23 46 chr4 86959556 86959729 -115368618 - L1M4 LINE L1 -1825 4321 4153 2302 110 0 0 chr4 86959734 86960026 -115368321 - AluSg SINE Alu -18 292 1 502 245 34 97 chr4 86960216 86960485 -115367862 + L2 LINE L2 3061 3312 -1 315 284 185 37 chr4 86960870 86961032 -115367315 - L2 LINE L2 -578 2736 2551 2136 84 4 7 chr4 86961056 86961329 -115367018 + AluSq SINE Alu 24 295 -18 355 119 30 0 chr4 86961334 86961401 -115366946 + (TA)n Simple_repeat Simple_repeat 2 70 0 1909 148 24 0 chr4 86961585 86961876 -115366471 + AluSg SINE Alu 1 298 -12 422 99 0 44 chr4 86961894 86961985 -115366362 + (GAAA)n Simple_repeat Simple_repeat 1 87 0 3949 143 94 11 chr4 86962004 86962801 -115365546 + Tigger2 DNA MER2_type 25 887 -1831 2107 133 0 3 chr4 86962828 86963128 -115365219 + AluSx SINE Alu 12 310 -2 4250 131 43 15 chr4 86963128 86963212 -115365135 + Tigger2 DNA MER2_type 1078 1158 -1560 2067 151 0 3 chr4 86963212 86963516 -115364831 - AluJo SINE Alu -9 303 1 4250 131 43 15 chr4 86963516 86964147 -115364200 + Tigger2 DNA MER2_type 1158 1813 -905 1610 100 52 26 chr4 86964147 86964378 -115363969 - AluSx SINE Alu -13 299 63 766 146 0 0 chr4 86964481 86964591 -115363756 - FLAM_C SINE Alu -33 110 1 306 212 91 91 chr4 86964592 86964724 -115363623 - L1MC5 LINE L1 -313 7648 7517 953 217 58 107 chr4 86964759 86964805 -115363542 - L1M4 LINE L1 -906 5240 5193 486 0 0 0 chr4 86964805 86964859 -115363488 + (TTATG)n Simple_repeat Simple_repeat 2 55 0 2043 118 29 0 chr4 86964859 86965139 -115363208 - AluSx SINE Alu -24 288 1 953 217 58 107 chr4 86965139 86965538 -115362809 - L1M4 LINE L1 -951 5195 4816 1354 154 0 0 chr4 86965594 86965829 -115362518 + AluSg/x SINE Alu 82 316 0 21 36 0 0 chr4 86965833 86965861 -115362486 + AT_rich Low_complexity Low_complexity 1 28 0 1633 176 36 0 chr4 86966275 86966553 -115361794 - AluJb SINE Alu -16 296 9 808 196 0 0 chr4 86966614 86966747 -115361600 - FLAM_A SINE Alu 0 133 1 830 166 33 17 chr4 86966758 86966939 -115361408 - L1MB3 LINE L1 -1 6182 5999 1336 161 16 66 chr4 86966945 86967249 -115361098 + AluJo SINE Alu 7 295 -17 3574 198 30 15 chr4 86967249 86968458 -115359889 - L1MB3 LINE L1 -171 6012 4789 23 33 0 0 chr4 86969438 86969468 -115358879 + AT_rich Low_complexity Low_complexity 1 30 0 465 227 141 10 chr4 86969870 86970068 -115358279 + L1MD2 LINE L1 5970 6193 -166 297 118 0 0 chr4 86970037 86970088 -115358259 + L1MD3 LINE L1 7788 7838 -157 * 1917 135 36 16 chr4 86970089 86970392 -115357955 + AluSg SINE Alu 1 309 -1 3898 189 52 22 chr4 86970393 86970530 -115357817 + L1MA9 LINE L1 5142 5273 -1039 2006 139 0 0 chr4 86970530 86970838 -115357509 + AluSx SINE Alu 1 308 0 3898 189 52 22 chr4 86970838 86971801 -115356546 + L1MA9 LINE L1 5273 6274 -38 232 330 60 0 chr4 86971882 86971982 -115356365 + MIR SINE MIR 156 261 -1 21 36 0 0 chr4 86972428 86972456 -115355891 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chr4 86972634 86972676 -115355671 + AT_rich Low_complexity Low_complexity 1 42 0 1622 143 71 4 chr4 86972680 86972787 -115355560 + AluJb SINE Alu 12 110 -202 405 0 0 0 chr4 86972787 86972832 -115355515 + (CA)n Simple_repeat Simple_repeat 2 46 0 1622 143 71 4 chr4 86972832 86972990 -115355357 + AluJb SINE Alu 110 295 -17 261 0 0 0 chr4 86972990 86973019 -115355328 + (TA)n Simple_repeat Simple_repeat 1 29 0 768 109 0 0 chr4 86973204 86973305 -115355042 + AluSq/x SINE Alu 32 132 -181 2273 109 0 0 chr4 86974433 86974726 -115353621 + AluSx SINE Alu 1 293 -19 2233 94 24 0 chr4 86975075 86975372 -115352975 + AluSx SINE Alu 4 307 -5 533 171 48 0 chr4 86975381 86975486 -115352861 + HY1 scRNA scRNA 1 110 -2 24 0 0 0 chr4 86975486 86975510 -115352837 + AT_rich Low_complexity Low_complexity 1 24 0 2373 100 0 7 chr4 86976056 86976365 -115351982 + AluSx SINE Alu 1 307 -5 22 0 0 0 chr4 86976666 86976688 -115351659 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr4 86977334 86977367 -115350980 + (TG)n Simple_repeat Simple_repeat 1 33 0 658 126 0 18 chr4 86977796 86977907 -115350440 - L1MB7 LINE L1 -8 6176 6068 234 0 0 0 chr4 86979049 86979075 -115349272 + (TA)n Simple_repeat Simple_repeat 2 27 0 707 247 145 22 chr4 86979260 86979487 -115348860 - MIR SINE MIR -6 256 2 2050 117 0 39 chr4 86979524 86979833 -115348514 + AluSx SINE Alu 1 297 -15 267 198 219 0 chr4 86981945 86982041 -115346306 - L1MC4 LINE L1 -8 8034 7918 1738 167 20 3 chr4 86982080 86982373 -115345974 - AluJb SINE Alu -11 301 4 22 0 0 0 chr4 86982833 86982855 -115345492 + AT_rich Low_complexity Low_complexity 1 22 0 323 298 39 29 chr4 86983164 86983268 -115345079 - L2 LINE L2 -1 3312 3208 22 0 0 0 chr4 86983556 86983578 -115344769 + AT_rich Low_complexity Low_complexity 1 22 0 2250 81 3 0 chr4 86984637 86984920 -115343427 + AluSx SINE Alu 1 284 -28 266 67 22 0 chr4 86984920 86984965 -115343382 + (TA)n Simple_repeat Simple_repeat 2 47 0 25 31 0 0 chr4 86985491 86985523 -115342824 + AT_rich Low_complexity Low_complexity 1 32 0 1842 106 28 35 chr4 86985784 86986097 -115342250 - AluSx SINE Alu 0 312 7 39 50 0 0 chr4 86986939 86986999 -115341348 + AT_rich Low_complexity Low_complexity 1 60 0 570 253 80 95 chr4 86987294 86987392 -115340955 + L1MC4a LINE L1 5383 5481 -2327 2154 95 0 20 chr4 86987392 86987687 -115340660 - AluSp SINE Alu -23 290 2 570 253 80 95 chr4 86987687 86987829 -115340518 + L1MC4a LINE L1 5481 5624 -2184 2586 43 0 7 chr4 86987829 86988132 -115340215 + AluY SINE Alu 1 301 -10 570 253 80 95 chr4 86988132 86988427 -115339920 + L1MC4a LINE L1 5624 5911 -1897 284 272 294 7 chr4 86989727 86989863 -115338484 + MIR SINE MIR 13 187 -75 2260 86 7 3 chr4 86990026 86990318 -115338029 + AluSq SINE Alu 1 293 -20 2100 141 0 3 chr4 86990396 86990701 -115337646 - AluSx SINE Alu -8 304 1 29 0 0 0 chr4 86990873 86990902 -115337445 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr4 86990927 86990971 -115337376 + AT_rich Low_complexity Low_complexity 1 44 0 418 237 119 8 chr4 86991488 86991606 -115336741 - L2 LINE L2 0 3313 3183 31 44 0 0 chr4 86992700 86992745 -115335602 + AT_rich Low_complexity Low_complexity 1 45 0 2334 76 0 7 chr4 86993057 86993358 -115334989 - AluY SINE Alu -12 299 1 1587 158 65 14 chr4 86994729 86995008 -115333339 + AluJb SINE Alu 1 293 -19 455 256 54 24 chr4 86995737 86995905 -115332442 + L1MC/D LINE L1 3745 3917 -2229 244 153 0 129 chr4 86995908 86995939 -115332408 + L1MB7 LINE L1 6090 6123 -61 2176 107 7 0 chr4 86995939 86996237 -115332110 - AluSx SINE Alu -12 300 1 244 153 0 129 chr4 86996237 86996290 -115332057 + L1MB7 LINE L1 6123 6163 -21 2264 213 167 24 chr4 86996302 86997203 -115331144 + L1MC/D LINE L1 3900 4670 -1681 1861 129 40 7 chr4 86997203 86997505 -115330842 + AluSx SINE Alu 1 312 0 2264 213 167 24 chr4 86997505 86998038 -115330309 + L1MC/D LINE L1 4670 5608 -743 2039 185 83 48 chr4 86998038 86998344 -115330003 - L1M4 LINE L1 -387 5797 5503 681 193 0 37 chr4 86998344 86998479 -115329868 - FLAM_C SINE Alu -3 130 1 2263 81 7 3 chr4 86998487 86998782 -115329565 - AluSq SINE Alu -17 296 1 2039 185 83 48 chr4 86998782 86999167 -115329180 - L1M4 LINE L1 -687 5497 5043 2260 117 3 0 chr4 86999167 86999476 -115328871 + AluSg SINE Alu 1 310 0 2039 185 83 48 chr4 86999476 86999626 -115328721 - L1M4 LINE L1 -1141 5043 4900 492 231 44 50 chr4 87003636 87003796 -115324551 - MIR3 SINE MIR -30 178 20 1065 203 41 58 chr4 87004325 87004567 -115323780 - MER8 DNA MER2_type -1 238 1 30 0 0 0 chr4 87004573 87004603 -115323744 + AT_rich Low_complexity Low_complexity 1 30 0 2132 109 0 0 chr4 87004668 87004943 -115323404 + AluSx SINE Alu 1 275 -37 342 0 0 0 chr4 87004947 87004985 -115323362 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 4925 121 42 15 chr4 87005090 87006188 -115322159 + L1PA14 LINE L1 4823 6005 -167 2135 121 0 23 chr4 87006188 87006495 -115321852 + AluSx SINE Alu 1 300 -12 4925 121 42 15 chr4 87006495 87006668 -115321679 + L1PA14 LINE L1 6005 6172 0 22 35 0 0 chr4 87006748 87006777 -115321570 + AT_rich Low_complexity Low_complexity 1 29 0 362 250 213 7 chr4 87008365 87008501 -115319846 + L2 LINE L2 1269 1432 -1882 616 196 18 9 chr4 87008510 87008622 -115319725 + FLAM_A SINE Alu 1 113 -29 2230 92 0 10 chr4 87008622 87008915 -115319432 - AluY SINE Alu -21 290 1 2146 225 95 13 chr4 87008929 87009537 -115318810 + L2 LINE L2 1420 2077 -1237 26 50 0 0 chr4 87009537 87009577 -115318770 + AT_rich Low_complexity Low_complexity 1 40 0 24 85 0 0 chr4 87009650 87009709 -115318638 + AT_rich Low_complexity Low_complexity 1 59 0 256 246 49 92 chr4 87009791 87009933 -115318414 + L1ME4a LINE L1 5973 6108 -13 743 138 0 46 chr4 87010248 87010400 -115317947 + L1MA4 LINE L1 6155 6299 -1 262 281 105 42 chr4 87010520 87010854 -115317493 + L1ME4a LINE L1 5678 6032 -89 2148 116 0 7 chr4 87011020 87011313 -115317034 + AluSg SINE Alu 1 291 -19 1923 133 3 26 chr4 87011329 87011631 -115316716 + AluSx SINE Alu 1 295 -17 230 326 11 34 chr4 87011776 87011865 -115316482 + MER5A DNA MER1_type 7 93 -96 23 0 0 0 chr4 87012259 87012282 -115316065 + AT_rich Low_complexity Low_complexity 1 23 0 597 225 167 22 chr4 87014259 87014481 -115313866 + MIR SINE MIR 9 262 0 29 0 0 0 chr4 87015127 87015156 -115313191 + AT_rich Low_complexity Low_complexity 1 29 0 882 197 143 55 chr4 87015813 87015863 -115312484 + MLT1F1 LTR MaLR 1 45 -497 2277 82 13 3 chr4 87015863 87016166 -115312181 + AluSq SINE Alu 1 306 -7 882 197 143 55 chr4 87016166 87016574 -115311773 + MLT1F1 LTR MaLR 45 535 -7 2300 87 10 0 chr4 87016703 87017003 -115311344 + AluSx SINE Alu 1 303 -9 1231 160 180 0 chr4 87017992 87018248 -115310099 + AluJb SINE Alu 1 302 0 260 279 163 0 chr4 87018322 87018451 -115309896 - MIR SINE MIR -2 260 111 21 57 0 0 chr4 87018610 87018645 -115309702 + AT_rich Low_complexity Low_complexity 1 35 0 251 250 10 30 chr4 87019333 87019433 -115308914 + (CCGCG)n Simple_repeat Simple_repeat 2 99 0 3047 170 56 11 chr4 87020971 87021618 -115306729 - L1MB8 LINE L1 0 6178 5503 182 270 0 63 chr4 87022522 87022585 -115305762 - MIR SINE MIR 0 262 204 1299 175 0 18 chr4 87022599 87022816 -115305531 - AluJb SINE Alu -14 298 86 606 147 0 20 chr4 87023691 87023793 -115304554 - AluJb SINE Alu -127 185 86 2168 117 3 0 chr4 87023836 87024127 -115304220 + AluSx SINE Alu 1 292 -20 823 129 7 7 chr4 87024492 87024632 -115303715 + AluSc SINE Alu 170 309 0 687 300 103 32 chr4 87024707 87024753 -115303594 + L1MC/D LINE L1 5383 5424 -2384 2161 127 3 0 chr4 87024753 87025060 -115303287 - AluJb SINE Alu -4 308 1 687 300 103 32 chr4 87025060 87025433 -115302914 + L1MC/D LINE L1 5424 5835 -1973 2101 130 0 7 chr4 87025479 87025772 -115302575 - AluSx SINE Alu -21 291 1 2434 75 20 0 chr4 87026176 87026481 -115301866 - AluY SINE Alu 0 311 1 2313 96 0 0 chr4 87027131 87027424 -115300923 - AluY SINE Alu -18 293 1 2062 161 3 0 chr4 87027996 87028300 -115300047 - AluSx SINE Alu -7 305 1 1423 87 6 0 chr4 87028399 87028582 -115299765 - AluSp SINE Alu -5 308 125 274 260 96 39 chr4 87029289 87029393 -115298954 - MIR SINE MIR -90 172 63 2518 74 0 0 chr4 87030085 87030394 -115297953 - AluSc SINE Alu 0 309 1 2178 79 38 7 chr4 87030617 87030909 -115297438 + AluSq SINE Alu 1 301 -12 1242 171 0 5 chr4 87031014 87031224 -115297123 + AluJb SINE Alu 87 295 -17 1698 177 43 0 chr4 87031506 87031805 -115296542 - AluJb SINE Alu 0 312 1 2492 79 3 0 chr4 87032351 87032656 -115295691 + AluSp SINE Alu 1 306 -7 21 0 0 0 chr4 87032663 87032684 -115295663 + AT_rich Low_complexity Low_complexity 1 21 0 329 309 0 0 chr4 87033224 87033308 -115295039 - L2 LINE L2 -15 3298 3215 203 250 0 21 chr4 87033732 87033780 -115294567 + L2 LINE L2 3220 3266 -6 2343 94 0 0 chr4 87034445 87034743 -115293604 - AluSg SINE Alu -12 298 1 2112 103 13 17 chr4 87035380 87035681 -115292666 - AluSg SINE Alu -10 300 1 1949 110 35 10 chr4 87035763 87036053 -115292294 + AluSx SINE Alu 1 297 -15 1887 113 8 8 chr4 87036271 87036536 -115291811 + AluSx SINE Alu 1 265 -47 247 114 0 0 chr4 87036867 87036902 -115291445 + MER6 DNA MER2_type 715 749 -116 1244 123 6 0 chr4 87036911 87037082 -115291265 - AluSg/x SINE Alu -21 289 118 1242 117 0 0 chr4 87037093 87037256 -115291091 - AluSx SINE Alu -140 172 10 447 119 174 64 chr4 87037256 87037365 -115290982 + MER6 DNA MER2_type 745 865 0 252 86 0 0 chr4 87037420 87037455 -115290892 + (TG)n Simple_repeat Simple_repeat 2 36 0 1302 192 41 12 chr4 87037579 87037824 -115290523 - AluJo SINE Alu -26 286 35 1107 150 0 22 chr4 87038027 87038207 -115290140 - AluSg/x SINE Alu 0 312 137 21 0 0 0 chr4 87039093 87039114 -115289233 + AT_rich Low_complexity Low_complexity 1 21 0 2307 76 0 35 chr4 87039329 87039645 -115288702 + AluY SINE Alu 1 305 -6 293 179 18 0 chr4 87039807 87039863 -115288484 + AluS SINE Alu 1 57 -244 1424 146 5 0 chr4 87039863 87040075 -115288272 + AluJb SINE Alu 100 312 0 23 0 0 0 chr4 87040217 87040240 -115288107 + AT_rich Low_complexity Low_complexity 1 23 0 1556 184 10 7 chr4 87040253 87040541 -115287806 - AluJb SINE Alu -23 289 1 2186 113 0 3 chr4 87040825 87041125 -115287222 + AluSx SINE Alu 1 299 -13 488 127 45 55 chr4 87042130 87042240 -115286107 - L1MB3 LINE L1 -1 6182 6074 186 71 0 0 chr4 87042262 87042290 -115286057 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2089 116 0 0 chr4 87042294 87042569 -115285778 - AluSx SINE Alu -37 275 1 297 169 0 0 chr4 87042595 87042654 -115285693 + CT-rich Low_complexity Low_complexity 2 60 0 245 29 0 29 chr4 87042657 87042692 -115285655 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1808 205 42 97 chr4 87042782 87043173 -115285174 - L1MB2 LINE L1 -3 6168 5911 399 21 0 0 chr4 87043173 87043221 -115285126 + (TA)n Simple_repeat Simple_repeat 1 48 0 1808 205 42 97 chr4 87043221 87043632 -115284715 - L1MB2 LINE L1 -260 5911 5479 1812 112 8 4 chr4 87043849 87044107 -115284240 + AluSq SINE Alu 54 312 -1 23 33 0 0 chr4 87044719 87044749 -115283598 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr4 87045053 87045089 -115283258 + AT_rich Low_complexity Low_complexity 1 36 0 28 71 0 0 chr4 87045210 87045266 -115283081 + AT_rich Low_complexity Low_complexity 1 56 0 275 28 0 0 chr4 87045267 87045303 -115283044 + MER4D LTR ERV1 790 825 -78 290 132 0 0 chr4 87096288 87096341 -115232006 + Alu SINE Alu 247 299 -1 10906 117 20 59 chr4 87096349 87096590 -115231757 - Tigger1 DNA MER2_type -342 2076 1827 2311 82 0 0 chr4 87096590 87096896 -115231451 - AluSc SINE Alu 0 306 1 10906 117 20 59 chr4 87096896 87096908 -115231439 - Tigger1 DNA MER2_type -591 1827 1816 2411 71 3 0 chr4 87096908 87097205 -115231142 - AluY SINE Alu -13 298 1 10906 117 20 59 chr4 87097205 87097452 -115230895 - Tigger1 DNA MER2_type -602 1816 1561 1941 140 3 26 chr4 87097452 87097760 -115230587 - AluSx SINE Alu -11 301 1 10906 117 20 59 chr4 87097760 87098600 -115229747 - Tigger1 DNA MER2_type -857 1561 823 2270 99 0 13 chr4 87098600 87098912 -115229435 - AluSc SINE Alu -1 308 1 10906 117 20 59 chr4 87098912 87099434 -115228913 - Tigger1 DNA MER2_type -1595 823 282 541 47 0 0 chr4 87099435 87099499 -115228848 - MSTA LTR MaLR -1 427 364 2299 122 79 45 chr4 87099499 87099712 -115228635 - MSTA LTR MaLR -11 417 213 2048 57 0 42 chr4 87099712 87099974 -115228373 - AluY SINE Alu -13 298 48 2299 122 79 45 chr4 87099974 87099986 -115228361 - MSTA LTR MaLR -215 213 203 2232 104 0 32 chr4 87099986 87100294 -115228053 - AluSc SINE Alu -11 298 1 2299 122 79 45 chr4 87100294 87100470 -115227877 - MSTA LTR MaLR -225 203 1 1396 129 21 26 chr4 87100470 87100700 -115227647 - Tigger1 DNA MER2_type -2132 286 58 488 123 41 0 chr4 87100700 87100773 -115227574 + AluSp/q SINE Alu 221 296 -17 3095 68 46 2 chr4 87100774 87101213 -115227134 - HUERS-P1 LTR ERV1 -1604 4659 4202 375 227 41 10 chr4 87102235 87102332 -115226015 + L1MC4a LINE L1 7195 7294 -514 388 251 107 28 chr4 87102382 87102597 -115225750 + L1MC4 LINE L1 7614 7845 -197 2251 89 10 0 chr4 87102618 87102911 -115225436 - AluSx SINE Alu -16 296 1 1451 227 68 15 chr4 87103055 87103451 -115224896 - L1M4 LINE L1 -1772 5793 5377 2456 71 0 3 chr4 87103453 87103749 -115224598 - AluY SINE Alu -16 295 1 853 99 0 16 chr4 87103749 87103870 -115224477 - FLAM_C SINE Alu -6 137 19 1900 204 22 7 chr4 87103871 87104278 -115224069 - L1M4 LINE L1 -2175 5390 4978 435 293 43 6 chr4 87104314 87104478 -115223869 - L1M4 LINE L1 -2576 4989 4820 988 148 29 15 chr4 87104490 87104762 -115223585 - Ricksha DNA DNA -13 2841 2625 715 140 0 0 chr4 87104762 87104869 -115223478 - AluSx SINE Alu -7 303 197 977 124 7 0 chr4 87104870 87105007 -115223340 - AluSx SINE Alu -174 138 1 3022 141 33 0 chr4 87105016 87105499 -115222848 + Ricksha DNA DNA 2528 3026 -220 637 148 0 20 chr4 87105500 87105601 -115222746 + AluJ/FLAM SINE Alu 2 100 -212 681 165 8 16 chr4 87105716 87105837 -115222510 + MLT2B3 LTR ERVL 435 554 0 3060 112 30 0 chr4 87105837 87106274 -115222073 + Ricksha_c DNA DNA 904 1353 -693 1651 155 34 37 chr4 87106278 87106633 -115221714 - L1M4 LINE L1 -2878 4687 4334 953 271 0 4 chr4 87106642 87106871 -115221476 - L1M4 LINE L1 -3419 4146 3919 2077 117 4 4 chr4 87106871 87107176 -115221171 - AluSx SINE Alu 0 305 1 757 185 0 30 chr4 87107176 87107311 -115221036 - AluJo/FLAM SINE Alu -171 131 1 13571 172 33 7 chr4 87107311 87109668 -115218679 - L1M4 LINE L1 -5132 2433 16 1234 117 28 0 chr4 87109671 87109851 -115218496 - AluSg/x SINE Alu -10 300 116 2364 188 48 52 chr4 87109861 87110751 -115217596 + LTR13 LTR ERVK 1 939 -68 1176 84 0 26 chr4 87110873 87111027 -115217320 - AluSc SINE Alu -158 151 2 480 72 0 0 chr4 87111077 87111146 -115217201 + (CA)n Simple_repeat Simple_repeat 2 70 0 378 42 0 0 chr4 87111146 87111194 -115217153 + (GA)n Simple_repeat Simple_repeat 1 48 0 319 162 81 91 chr4 87111197 87111296 -115217051 + L1MC4 LINE L1 7914 8011 -31 1944 117 18 146 chr4 87111695 87111789 -115216558 + MLT1B LTR MaLR 1 105 -285 2092 140 3 10 chr4 87111789 87112096 -115216251 - AluSx SINE Alu -7 305 1 1944 117 18 146 chr4 87112096 87112201 -115216146 + MLT1B LTR MaLR 105 222 -168 1596 171 55 10 chr4 87112201 87112494 -115215853 + AluJo SINE Alu 5 310 -2 1944 117 18 146 chr4 87112494 87112738 -115215609 + MLT1B LTR MaLR 222 388 -2 27 73 0 0 chr4 87113051 87113106 -115215241 + AT_rich Low_complexity Low_complexity 1 55 0 2322 92 0 14 chr4 87113257 87113552 -115214795 - AluSg SINE Alu -18 292 2 23 0 0 0 chr4 87113583 87113606 -115214741 + AT_rich Low_complexity Low_complexity 1 23 0 824 169 8 0 chr4 87114618 87114748 -115213599 + FLAM_C SINE Alu 1 131 -12 414 322 25 74 chr4 87114941 87115143 -115213204 - MER91A DNA MER1_type -1 195 4 259 340 90 0 chr4 87115152 87115252 -115213095 + MIR3 SINE MIR 69 177 -31 691 130 0 0 chr4 87115671 87115771 -115212576 + AluSq/x SINE Alu 34 133 -179 663 154 0 88 chr4 87117756 87117892 -115210455 - FLAM_C SINE Alu -1 142 19 1196 141 15 29 chr4 87118175 87118422 -115209925 - AluJb SINE Alu 0 352 109 595 271 36 0 chr4 87118912 87119052 -115209295 - MER93a LTR ERV1 -10 392 248 1100 176 68 29 chr4 87119052 87119371 -115208976 - MSTD LTR MaLR 0 396 1 589 177 36 50 chr4 87119373 87119563 -115208784 - MER93b LTR ERV1 -147 226 61 1010 232 21 0 chr4 87120202 87120439 -115207908 + Charlie4 DNA MER1_type 40 281 -1680 358 292 7 22 chr4 87120565 87120702 -115207645 + Charlie4 DNA MER1_type 1254 1388 -573 1566 127 0 5 chr4 87120704 87120924 -115207423 + AluSg/x SINE Alu 75 293 -17 365 285 69 0 chr4 87120934 87121078 -115207269 + Charlie4 DNA MER1_type 1457 1610 -351 1936 154 28 55 chr4 87121113 87121510 -115206837 - MER74A LTR ERVL 0 558 173 470 129 0 8 chr4 87121511 87121728 -115206619 + AluJb SINE Alu 1 292 -20 1039 145 28 22 chr4 87121728 87121907 -115206440 - MER74A LTR ERVL -378 180 1 1442 232 169 24 chr4 87122085 87122577 -115205770 - MLT1F1 LTR MaLR -8 559 1 522 139 28 56 chr4 87122578 87122604 -115205743 + Charlie4 DNA MER1_type 1813 1838 -123 1840 149 0 0 chr4 87122604 87122872 -115205475 + AluSx SINE Alu 1 268 -44 522 139 28 56 chr4 87122872 87122953 -115205394 + Charlie4 DNA MER1_type 1838 1917 -44 524 304 93 8 chr4 87122960 87123197 -115205150 + MIR SINE MIR 5 261 -1 2219 106 0 0 chr4 87123390 87123711 -115204636 + AluSx SINE Alu 1 321 0 555 144 0 10 chr4 87124618 87124715 -115203632 + L1MD1 LINE L1 6147 6242 0 208 208 0 57 chr4 87124743 87124796 -115203551 + GA-rich Low_complexity Low_complexity 4 53 0 1821 137 10 54 chr4 87125008 87125321 -115203026 + AluJo SINE Alu 1 299 -13 452 312 18 12 chr4 87125542 87125712 -115202635 + MER5B DNA MER1_type 3 173 -5 512 284 43 0 chr4 87126334 87126475 -115201872 - MLT1B LTR MaLR -42 348 202 827 218 39 0 chr4 87126476 87126655 -115201692 + ERVL LTR ERVL 2413 2598 -3166 1137 126 56 0 chr4 87126855 87127053 -115201294 - L1MB3 LINE L1 -40 6143 5935 299 172 16 31 chr4 87127053 87127117 -115201230 - MADE1 DNA Mariner 0 80 18 2477 93 3 0 chr4 87127118 87127430 -115200917 - AluSp SINE Alu 0 313 1 5912 189 67 6 chr4 87127430 87128708 -115199639 - L1 LINE L1 -818 5328 3973 386 254 119 45 chr4 87128932 87129109 -115199238 - MIR SINE MIR -41 221 32 268 277 134 17 chr4 87129146 87129265 -115199082 - L2 LINE L2 -2 3311 3179 342 200 0 0 chr4 87129365 87129425 -115198922 + Tigger3(Golem) DNA MER2_type 2675 2734 -295 385 280 47 37 chr4 87129682 87130029 -115198318 + AluSp SINE Alu 1 350 0 432 212 12 12 chr4 87130198 87130283 -115198064 - L2 LINE L2 0 3313 3229 401 190 140 10 chr4 87130280 87130380 -115197967 - L2 LINE L2 -15 3298 3186 * 192 346 88 32 chr4 87130497 87130714 -115197633 - L2 LINE L2 -964 2350 2122 734 145 0 92 chr4 87131400 87131514 -115196833 + FLAM_C SINE Alu 6 104 -208 2455 85 0 3 chr4 87131514 87131821 -115196526 + AluSg1 SINE Alu 1 306 -3 734 145 0 92 chr4 87131821 87131858 -115196489 + FLAM_C SINE Alu 104 143 -169 3263 165 14 3 chr4 87132287 87132863 -115195484 - L1MC3 LINE L1 0 7785 7204 261 264 35 0 chr4 87132901 87132988 -115195359 - MLT1F1 LTR MaLR -443 124 35 665 196 87 0 chr4 87133122 87133260 -115195087 - L1MC3 LINE L1 -749 7036 6887 34 24 0 0 chr4 87133622 87133663 -115194684 + AT_rich Low_complexity Low_complexity 1 41 0 919 104 0 76 chr4 87133663 87133807 -115194540 - FLAM_C SINE Alu 0 133 1 1995 130 65 0 chr4 87134071 87134363 -115193984 - AluJb SINE Alu -1 311 1 453 216 129 29 chr4 87134401 87134572 -115193775 + LTR33 LTR ERVL 11 198 -323 444 209 217 43 chr4 87134604 87134839 -115193508 + LTR33 LTR ERVL 245 520 -1 2119 236 82 31 chr4 87136276 87137015 -115191332 + HAL1 LINE L1 1591 2367 -140 2741 72 23 0 chr4 87137210 87137558 -115190789 - LTR8 LTR ERV1 -335 356 1 26 30 0 0 chr4 87137707 87137740 -115190607 + AT_rich Low_complexity Low_complexity 1 33 0 730 92 0 0 chr4 87138034 87138132 -115190215 + HUERS-P1 LTR ERV1 1490 1587 -4676 * 12847 67 12 7 chr4 87138131 87138497 -115189850 + HUERS-P1 LTR ERV1 2594 2956 -3307 297 51 0 0 chr4 87138497 87138536 -115189811 + (TG)n Simple_repeat Simple_repeat 1 39 0 12847 67 12 7 chr4 87138536 87139127 -115189220 + HUERS-P1 LTR ERV1 2956 3542 -2721 2325 98 0 0 chr4 87139127 87139423 -115188924 - AluSc SINE Alu -13 296 1 12847 67 12 7 chr4 87139423 87140142 -115188205 + HUERS-P1 LTR ERV1 3542 4281 -1982 1413 236 48 73 chr4 87140432 87140666 -115187681 - L2 LINE L2 -111 3202 2964 1964 113 3 50 chr4 87140666 87140992 -115187355 - AluSx SINE Alu 0 312 1 1413 236 48 73 chr4 87140992 87141352 -115186995 - L2 LINE L2 -349 2964 2622 1261 147 14 32 chr4 87141357 87141575 -115186772 + AluJo SINE Alu 1 214 -98 794 191 21 140 chr4 87141575 87141811 -115186536 + AluJo SINE Alu 81 288 -24 2976 221 136 124 chr4 87141835 87142757 -115185590 - L2 LINE L2 -745 2569 1660 739 203 49 6 chr4 87142757 87142920 -115185427 - MER20 DNA MER1_type 0 219 50 2976 221 136 124 chr4 87142920 87142977 -115185370 - L2 LINE L2 -1654 1660 1605 1688 137 84 11 chr4 87142977 87143262 -115185085 - AluJb SINE Alu -6 306 1 2976 221 136 124 chr4 87143262 87143464 -115184883 - L2 LINE L2 -1709 1605 1407 576 214 0 61 chr4 87143464 87143595 -115184752 + FLAM_A SINE Alu 2 124 -9 2976 221 136 124 chr4 87143595 87143916 -115184431 - L2 LINE L2 -1907 1407 883 2201 116 3 0 chr4 87143934 87144228 -115184119 + AluSx SINE Alu 1 295 -17 2363 75 0 0 chr4 87144436 87144747 -115183600 + AluY SINE Alu 1 311 0 337 250 0 0 chr4 87145650 87145718 -115182629 - L1ME4a LINE L1 -70 6051 5984 2250 99 3 0 chr4 87145823 87146116 -115182231 - AluSg SINE Alu -16 294 1 23 0 0 0 chr4 87146199 87146222 -115182125 + AT_rich Low_complexity Low_complexity 1 23 0 2277 108 0 10 chr4 87146293 87146607 -115181740 - AluSx SINE Alu -1 311 1 2402 59 3 3 chr4 87146892 87147182 -115181165 + AluY SINE Alu 1 290 -21 180 0 0 0 chr4 87147561 87147581 -115180766 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 2454 66 7 0 chr4 87148015 87148317 -115180030 + AluY SINE Alu 1 304 -7 1848 138 4 8 chr4 87148621 87148889 -115179458 - AluJb SINE Alu -41 271 5 366 219 171 18 chr4 87148999 87149163 -115179184 - L1MC4a LINE L1 -1861 5947 5759 405 255 103 53 chr4 87149212 87149545 -115178802 - L1M2 LINE L1 -662 5629 5266 2099 157 60 56 chr4 87149755 87150059 -115178288 - Charlie1 DNA MER1_type -4 2757 2449 2444 70 0 16 chr4 87150059 87150375 -115177972 - AluY SINE Alu 0 311 1 2099 157 60 56 chr4 87150375 87150555 -115177792 - Charlie1 DNA MER1_type -312 2449 2271 1450 112 9 0 chr4 87150558 87150773 -115177574 - AluY SINE Alu -12 299 83 523 53 5 7 chr4 87150773 87150980 -115177367 - AluY SINE Alu -62 249 1 477 192 58 19 chr4 87150980 87151084 -115177263 - Charlie1 DNA MER1_type -480 2281 2174 238 192 20 121 chr4 87151098 87151127 -115177220 - L1MC5 LINE L1 -732 7229 7199 2244 90 7 3 chr4 87151127 87151438 -115176909 + AluSp SINE Alu 1 312 0 238 192 20 121 chr4 87151438 87151506 -115176841 - L1MC5 LINE L1 -762 7199 7141 1444 212 155 12 chr4 87151570 87151990 -115176357 - L1ME3A LINE L1 -6 6164 5685 995 270 97 6 chr4 87151994 87152086 -115176261 - L1MC4 LINE L1 -988 7054 6972 660 191 71 32 chr4 87152086 87152212 -115176135 - FLAM_C SINE Alu -2 131 1 995 270 97 6 chr4 87152212 87152449 -115175898 - L1MC4 LINE L1 -1070 6972 6695 22 56 0 0 chr4 87152569 87152605 -115175742 + AT_rich Low_complexity Low_complexity 1 36 0 2932 213 49 8 chr4 87152725 87153336 -115175011 - MER82 DNA MER2_type -7 646 11 2376 66 0 50 chr4 87153763 87154081 -115174266 - AluY SINE Alu -9 302 1 2116 107 35 0 chr4 87154083 87154373 -115173974 - AluSp SINE Alu -12 301 2 1700 190 7 3 chr4 87154428 87154718 -115173629 + AluJb SINE Alu 1 291 -21 1244 118 27 0 chr4 87154718 87154904 -115173443 - L1MB3 LINE L1 -9 6174 5984 447 285 152 67 chr4 87154919 87154965 -115173382 - L2 LINE L2 -906 2408 2367 1446 187 131 8 chr4 87154965 87155232 -115173115 - AluJo SINE Alu 0 302 3 447 285 152 67 chr4 87155232 87155250 -115173097 - L2 LINE L2 -947 2367 2352 1589 145 61 20 chr4 87155250 87155547 -115172800 - AluJo SINE Alu 0 312 4 447 285 152 67 chr4 87155547 87155870 -115172477 - L2 LINE L2 -962 2352 1987 1780 158 14 3 chr4 87156252 87156536 -115171811 + AluSx SINE Alu 6 292 -20 1937 160 0 25 chr4 87157431 87157609 -115170738 - AluJo SINE Alu -1 311 143 1844 142 55 0 chr4 87157609 87157898 -115170449 - AluSg SINE Alu -5 305 1 1937 160 0 25 chr4 87157898 87158037 -115170310 - AluJo SINE Alu -169 143 2 23 0 0 0 chr4 87159023 87159046 -115169301 + AT_rich Low_complexity Low_complexity 1 23 0 2221 130 0 0 chr4 87159062 87159361 -115168986 + AluSx SINE Alu 1 299 -13 260 184 0 0 chr4 87159438 87159487 -115168860 - L2 LINE L2 0 3313 3265 246 356 22 63 chr4 87159572 87159794 -115168553 + L2 LINE L2 760 972 -2342 515 326 107 5 chr4 87159818 87160042 -115168305 + L2 LINE L2 1177 1423 -1891 389 350 61 43 chr4 87160366 87160826 -115167521 + L2 LINE L2 1904 2371 -943 360 149 0 108 chr4 87160902 87160976 -115167371 - AluJ/FLAM SINE Alu -227 75 10 348 362 49 83 chr4 87161322 87161670 -115166677 + L2 LINE L2 2936 3271 -1 1526 181 24 20 chr4 87161800 87162093 -115166254 - AluJo SINE Alu -18 294 1 2285 82 3 7 chr4 87162093 87162384 -115165963 - AluSc SINE Alu -18 291 1 2130 88 3 76 chr4 87162450 87162779 -115165568 - AluSp SINE Alu -8 305 1 493 247 88 25 chr4 87162930 87163169 -115165178 - L1M4 LINE L1 -1096 5050 4797 789 239 0 0 chr4 87163270 87163408 -115164939 + FLAM_C SINE Alu 2 139 -4 2081 184 18 13 chr4 87163409 87163789 -115164558 - L1MB5 LINE L1 -16 6158 5777 2389 71 0 17 chr4 87164047 87164344 -115164003 + AluSc SINE Alu 1 292 -17 1451 176 36 0 chr4 87164949 87165227 -115163120 + AluSg SINE Alu 4 291 -19 204 264 57 0 chr4 87166113 87166166 -115162181 - L2 LINE L2 -213 3059 3004 869 228 24 42 chr4 87166183 87166458 -115161889 + L1MCa LINE L1 3 232 -5813 23 0 0 0 chr4 87166480 87166503 -115161844 + AT_rich Low_complexity Low_complexity 1 23 0 5040 167 135 38 chr4 87166520 87166598 -115161749 + L1MCa LINE L1 827 896 -5668 2136 105 17 3 chr4 87166598 87166894 -115161453 + AluSx SINE Alu 1 300 -12 5040 167 135 38 chr4 87166894 87167368 -115160979 + L1MCa LINE L1 896 1323 -5241 2151 79 11 4 chr4 87167368 87167645 -115160702 + AluY SINE Alu 1 279 -32 5040 167 135 38 chr4 87167645 87167710 -115160637 + L1MCa LINE L1 1323 1380 -5184 2426 54 34 0 chr4 87167710 87168006 -115160341 + AluY SINE Alu 1 306 -5 5040 167 135 38 chr4 87168006 87168401 -115159946 + L1MCa LINE L1 1380 1735 -4829 1924 166 3 0 chr4 87168401 87168696 -115159651 + AluJb SINE Alu 1 296 -16 5040 167 135 38 chr4 87168696 87169157 -115159190 + L1MCa LINE L1 1735 2452 -4112 2126 110 7 0 chr4 87169164 87169478 -115158869 + AluSq SINE Alu 1 316 0 1144 248 18 15 chr4 87169491 87169830 -115158517 + L1MCa LINE L1 2885 3224 -3340 843 90 27 0 chr4 87169830 87169941 -115158406 - AluSp/q SINE Alu -17 296 183 3897 130 15 5 chr4 87169943 87170526 -115157821 + Ricksha DNA DNA 9 597 -2649 2669 205 65 51 chr4 87170649 87170943 -115157404 - L1MC5 LINE L1 -518 7443 7155 1133 286 117 12 chr4 87170943 87171363 -115156984 + LTR16B LTR ERVL 1 464 0 2669 205 65 51 chr4 87171363 87171628 -115156719 - L1MC5 LINE L1 -806 7155 6895 1971 138 14 0 chr4 87171628 87171917 -115156430 - AluSx SINE Alu -19 293 1 2669 205 65 51 chr4 87171917 87172202 -115156145 - L1MC5 LINE L1 -1066 6895 6569 279 304 69 19 chr4 87172259 87172517 -115155830 - L1M4 LINE L1 -1011 5135 4860 227 264 0 19 chr4 87172617 87172670 -115155677 + MER5B DNA MER1_type 1 52 -126 708 183 155 50 chr4 87172670 87172889 -115155458 - MLT1A1 LTR MaLR -123 242 1 904 196 41 18 chr4 87173239 87173459 -115154888 - Charlie2 DNA MER1_type -213 2649 2425 409 197 0 0 chr4 87173467 87173543 -115154804 + AluJ/FRAM SINE Alu 231 306 -6 400 177 44 35 chr4 87173543 87173656 -115154691 - Charlie2 DNA MER1_type -473 2389 2276 274 283 22 22 chr4 87173893 87173985 -115154362 + MLT1K LTR MaLR 157 248 -340 1178 129 5 10 chr4 87174004 87174197 -115154150 + AluY SINE Alu 120 311 0 253 201 34 154 chr4 87174208 87174357 -115153990 + MLT1K LTR MaLR 278 408 -180 325 101 14 29 chr4 87174357 87174426 -115153921 + (GGGGA)n Simple_repeat Simple_repeat 4 71 0 2429 67 0 3 chr4 87174559 87174856 -115153491 + AluSc SINE Alu 1 296 -13 2404 62 0 50 chr4 87174935 87175257 -115153090 + AluY SINE Alu 1 306 -5 2022 119 27 0 chr4 87175359 87175653 -115152694 + AluSx SINE Alu 1 302 -10 4991 195 169 10 chr4 87175767 87177067 -115151280 - L1MC4a LINE L1 0 7808 6302 2161 122 0 0 chr4 87177067 87177363 -115150984 + AluSg SINE Alu 1 296 -14 2457 69 10 0 chr4 87177386 87177690 -115150657 + AluY SINE Alu 1 307 -4 277 101 22 79 chr4 87177954 87178043 -115150304 + (TTCCC)n Simple_repeat Simple_repeat 4 87 0 914 210 0 6 chr4 87178059 87178226 -115150121 - AluJb SINE Alu -13 299 134 2772 14 0 0 chr4 87179398 87179694 -115148653 + AluYa5 SINE Alu 16 311 0 2609 58 0 6 chr4 87179863 87180175 -115148172 + AluY SINE Alu 1 310 -1 1822 168 0 17 chr4 87180249 87180547 -115147800 + AluJo SINE Alu 1 293 -19 624 216 25 114 chr4 87180549 87180864 -115147483 - HAL1 LINE L1 0 2507 2221 2364 109 0 0 chr4 87180913 87181217 -115147130 - AluSx SINE Alu -4 308 5 226 277 75 11 chr4 87181589 87181683 -115146664 - MIR SINE MIR -10 252 153 320 297 30 0 chr4 87181876 87181977 -115146370 - HAL1 LINE L1 -604 1903 1800 358 305 23 29 chr4 87181997 87182171 -115146176 - HAL1 LINE L1 -763 1744 1572 298 253 62 67 chr4 87182208 87182518 -115145829 + L1MDa LINE L1 2428 2746 -3794 314 358 7 7 chr4 87182519 87182656 -115145691 + L1ME3A LINE L1 5798 5934 -236 2211 88 65 0 chr4 87182838 87183140 -115145207 - MER51B LTR ERV1 0 377 56 613 208 46 52 chr4 87183140 87183313 -115145034 - LTR9 LTR ERV1 0 612 441 2100 114 28 3 chr4 87183336 87183625 -115144722 - AluSx SINE Alu -16 296 1 2346 142 28 14 chr4 87183980 87184339 -115144008 - THE1B LTR MaLR 0 364 1 11998 85 4 13 chr4 87184343 87185933 -115142414 - THE1B-int LTR MaLR -4 1576 1 2154 142 39 28 chr4 87185933 87186293 -115142054 - THE1B LTR MaLR 0 364 1 2305 100 0 0 chr4 87186980 87187280 -115141067 - AluY SINE Alu -7 304 5 623 255 65 24 chr4 87187451 87187698 -115140649 - L2 LINE L2 -925 2389 2133 235 304 13 0 chr4 87187767 87187846 -115140501 + MIR SINE MIR 70 149 -113 1674 147 42 32 chr4 87187851 87188136 -115140211 + AluJo SINE Alu 6 293 -19 1651 194 126 133 chr4 87189005 87189737 -115138610 - LTR8A LTR ERV1 0 727 1 2028 128 3 14 chr4 87190293 87190429 -115137918 + AluSx SINE Alu 1 137 -175 1865 120 58 3 chr4 87190429 87190720 -115137627 + AluSc SINE Alu 1 307 -2 2028 128 3 14 chr4 87190720 87190879 -115137468 + AluSx SINE Alu 137 293 -19 2294 64 3 3 chr4 87190882 87191202 -115137145 + AluY SINE Alu 1 320 0 2354 74 7 3 chr4 87191415 87191713 -115136634 - AluY SINE Alu -12 299 1 547 213 92 53 chr4 87192198 87192404 -115135943 - MER39-int LTR ERV1 -2429 2694 2497 6672 69 20 37 chr4 87192404 87194271 -115134076 - SVA Other Other -839 1386 4 547 213 92 53 chr4 87194271 87194553 -115133794 - MER39-int LTR ERV1 -2626 2497 2227 2474 90 0 0 chr4 87194553 87194864 -115133483 + AluSx SINE Alu 1 311 -1 547 213 92 53 chr4 87194864 87195067 -115133280 - MER39-int LTR ERV1 -2896 2227 1654 499 222 24 16 chr4 87195312 87195438 -115132909 - MER39-int LTR ERV1 -2749 2122 1996 403 210 85 21 chr4 87195437 87195614 -115132733 - MER39-int LTR ERV1 -3367 2964 889 * 286 98 0 0 chr4 87195693 87195734 -115132613 - MER39-int LTR ERV1 -3527 2804 2764 408 250 40 10 chr4 87195794 87195894 -115132453 - MER39-int LTR ERV1 -4062 874 772 573 140 23 73 chr4 87195919 87196089 -115132258 + MER54A LTR ERVL 24 342 -470 299 167 0 0 chr4 87196075 87196123 -115132224 + MER54B LTR ERVL 746 793 0 * 536 102 68 0 chr4 87196123 87196190 -115132157 - MER31A LTR ERV1 -394 91 19 319 158 0 18 chr4 87196194 87196251 -115132096 + MER31A LTR ERV1 248 303 -182 1612 199 66 63 chr4 87196257 87196633 -115131714 - MER39-int LTR ERV1 -4329 1908 1535 314 23 23 0 chr4 87196633 87196676 -115131671 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 1612 199 66 63 chr4 87196676 87196895 -115131452 - MER39-int LTR ERV1 -4702 1535 299 737 201 118 57 chr4 87196912 87197407 -115130940 - MER39-int LTR ERV1 -5709 622 41 2320 161 82 45 chr4 87197456 87198057 -115130290 - MER39 LTR ERV1 -4 703 36 1889 86 12 19 chr4 87198967 87199223 -115129124 + AluSg SINE Alu 39 292 -18 1331 168 5 0 chr4 87199258 87199478 -115128869 - AluJb SINE Alu -8 304 84 215 238 131 0 chr4 87199518 87199602 -115128745 - MIR SINE MIR -74 188 94 1671 184 7 7 chr4 87199602 87199878 -115128469 + MER21B LTR ERV1 1 276 -587 1928 157 40 0 chr4 87199878 87200203 -115128144 - MER72 LTR ERV1 0 722 385 1955 73 4 8 chr4 87200203 87200448 -115127899 - AluSp SINE Alu -16 297 54 2934 174 22 43 chr4 87200449 87200630 -115127717 + MER21B LTR ERV1 275 458 -405 2000 144 10 0 chr4 87200630 87200928 -115127419 - AluSg1 SINE Alu -8 301 1 2934 174 22 43 chr4 87200928 87201331 -115127016 + MER21B LTR ERV1 458 847 -16 1806 170 39 0 chr4 87201335 87201618 -115126729 + AluJb SINE Alu 3 296 -16 195 333 23 23 chr4 87201653 87201740 -115126607 - MIR SINE MIR -164 98 12 2012 177 68 32 chr4 87201939 87202380 -115125967 + LTR2B LTR ERV1 34 490 0 4073 106 44 22 chr4 87202505 87203135 -115125212 + LTR9B LTR ERV1 1 644 0 2431 93 0 0 chr4 87203203 87203513 -115124834 + AluY SINE Alu 1 310 -1 1454 174 61 31 chr4 87203522 87203846 -115124501 + AluJb SINE Alu 1 333 0 336 252 52 90 chr4 87204056 87204211 -115124136 - L2 LINE L2 -1 3271 3123 489 17 0 0 chr4 87204604 87204662 -115123685 + (TG)n Simple_repeat Simple_repeat 1 58 0 235 228 18 18 chr4 87205025 87205082 -115123265 + MIR SINE MIR 77 133 -75 310 268 152 9 chr4 87205335 87205447 -115122900 - MLT1K LTR MaLR 0 588 461 237 346 29 12 chr4 87205545 87205788 -115122559 + L1ME4a LINE L1 2841 3087 -3059 2331 80 3 35 chr4 87205788 87206099 -115122248 + AluY SINE Alu 1 301 -10 1023 174 6 0 chr4 87206703 87206870 -115121477 - FAM SINE Alu -7 168 1 236 270 32 0 chr4 87206899 87206962 -115121385 + MER5A DNA MER1_type 9 73 -116 670 279 116 24 chr4 87207079 87207588 -115120759 + L1ME4a LINE L1 3694 4249 -1897 1917 138 55 3 chr4 87207603 87207894 -115120453 + AluSx SINE Alu 1 306 -6 423 130 0 0 chr4 87207961 87208030 -115120317 - AluSc SINE Alu -3 306 238 1329 124 0 0 chr4 87208047 87208225 -115120122 - AluSx SINE Alu -134 178 1 27 0 0 0 chr4 87208733 87208760 -115119587 + AT_rich Low_complexity Low_complexity 1 27 0 288 262 33 49 chr4 87208847 87209030 -115119317 + L1ME4a LINE L1 5265 5444 -2364 2367 173 45 7 chr4 87209030 87209457 -115118890 + Tigger4(Zombi) DNA MER2_type 1 443 -2288 442 110 178 0 chr4 87209454 87209527 -115118820 + Tigger4(Zombi) DNA MER2_type 2646 2731 0 * 238 278 79 48 chr4 87209535 87209661 -115118686 + L1ME4a LINE L1 5451 5580 -2228 226 263 0 0 chr4 87209666 87209723 -115118624 + MIR SINE MIR 185 241 -21 448 314 106 10 chr4 87209764 87209971 -115118376 + L1ME4a LINE L1 5602 5828 -293 1834 81 17 0 chr4 87210013 87210248 -115118099 + HERVFH19I LTR ERV1 3282 3520 -4199 1175 218 0 0 chr4 87210248 87210459 -115117888 + Tigger4(Zombi) DNA MER2_type 151 361 -2370 32139 72 5 4 chr4 87210507 87213384 -115114963 + HERVFH19I LTR ERV1 3582 6467 -1252 2292 96 0 17 chr4 87213384 87213686 -115114661 - AluSg SINE Alu -13 297 1 32139 72 5 4 chr4 87213686 87214934 -115113413 + HERVFH19I LTR ERV1 6467 7712 -7 2348 123 97 26 chr4 87214941 87215395 -115112952 + LTR19A LTR ERV1 1 486 0 252 246 85 8 chr4 87215395 87215517 -115112830 + L1ME4a LINE L1 5902 6036 -85 638 194 0 16 chr4 87215878 87216002 -115112345 - L2 LINE L2 -2 3311 3190 323 133 0 0 chr4 87216069 87216114 -115112233 - HERVFH19I LTR ERV1 -1502 6217 6173 186 301 60 24 chr4 87216784 87216867 -115111480 + MIR SINE MIR 68 153 -109 949 148 63 11 chr4 87218077 87218266 -115110081 - L1MB2 LINE L1 -2 6169 5971 2220 96 3 0 chr4 87218277 87218584 -115109763 - AluSp SINE Alu 0 308 1 442 316 26 0 chr4 87219246 87219401 -115108946 - MIR SINE MIR -70 192 34 1363 235 68 17 chr4 87220699 87221152 -115107195 - L2 LINE L2 -12 3301 2803 1462 88 79 14 chr4 87221152 87221368 -115106979 - MER30 DNA MER1_type 0 230 1 1363 235 68 17 chr4 87221368 87221451 -115106896 - L2 LINE L2 -510 2803 2726 1704 125 59 0 chr4 87221469 87221725 -115106622 - Tigger3(Golem) DNA MER2_type -2 3027 2757 352 243 121 36 chr4 87221936 87222076 -115106271 - MER117 DNA MER1_type -5 192 41 816 145 0 0 chr4 87222173 87222290 -115106057 + AluSq/x SINE Alu 1 117 -195 597 156 0 0 chr4 87222290 87222380 -115105967 - AluJo SINE Alu -26 286 197 1262 101 6 0 chr4 87222380 87222549 -115105798 + AluSq SINE Alu 130 299 -14 232 248 248 10 chr4 87222848 87222949 -115105398 - MIR SINE MIR -61 147 23 24 0 0 0 chr4 87223813 87223837 -115104510 + AT_rich Low_complexity Low_complexity 1 24 0 247 347 123 12 chr4 87224382 87224552 -115103795 + MIR SINE MIR 13 201 -61 250 377 14 0 chr4 87224871 87225017 -115103330 - MIR3 SINE MIR -9 199 52 441 299 21 7 chr4 87225332 87225476 -115102871 - MIR SINE MIR 0 262 117 503 276 163 36 chr4 87225508 87225729 -115102618 + L2 LINE L2 2716 2964 -350 27 29 0 0 chr4 87225758 87225792 -115102555 + AT_rich Low_complexity Low_complexity 1 34 0 346 174 174 22 chr4 87225808 87225900 -115102447 - AluJo SINE Alu -82 220 115 282 296 79 7 chr4 87225902 87226054 -115102293 + L2 LINE L2 3027 3189 -124 3381 206 64 26 chr4 87226072 87226911 -115101436 + L1MC4 LINE L1 7168 8038 -4 2296 88 30 3 chr4 87226947 87227252 -115101095 + AluSq SINE Alu 1 313 0 990 154 0 0 chr4 87227619 87227768 -115100579 - FRAM SINE Alu -16 150 2 394 231 48 91 chr4 87228480 87228666 -115099681 - Charlie8 DNA MER1_type -2157 260 83 1893 146 14 3 chr4 87228677 87228971 -115099376 + AluJo SINE Alu 1 297 -15 2239 101 3 7 chr4 87229280 87229578 -115098769 - AluSq SINE Alu -11 302 6 220 263 172 20 chr4 87229933 87230032 -115098315 - MER5A DNA MER1_type -2 187 74 743 172 0 8 chr4 87230043 87230171 -115098176 - FLAM_A SINE Alu -10 132 6 1967 258 71 30 chr4 87230510 87231174 -115097173 + LTR8 LTR ERV1 1 691 0 203 224 17 17 chr4 87231393 87231451 -115096896 + L2 LINE L2 3214 3271 -1 328 309 119 16 chr4 87231748 87231874 -115096473 - MER5A DNA MER1_type -6 183 45 2114 108 0 67 chr4 87232279 87232594 -115095753 - AluSx SINE Alu -18 294 1 372 278 69 28 chr4 87233002 87233146 -115095201 - MER117 DNA MER1_type -36 161 12 25 0 0 0 chr4 87233153 87233178 -115095169 + AT_rich Low_complexity Low_complexity 1 25 0 647 156 214 36 chr4 87233220 87233412 -115094935 - MER2 DNA MER2_type 0 345 120 2307 93 0 34 chr4 87233412 87233735 -115094612 + AluSx SINE Alu 1 312 0 2358 153 44 5 chr4 87233759 87234145 -115094202 - MSTB LTR MaLR -25 401 1 372 255 28 28 chr4 87234217 87234323 -115094024 + Charlie7 DNA MER1_type 1178 1283 -1329 2432 97 128 13 chr4 87234382 87234448 -115093899 - MSTC LTR MaLR 0 428 371 2205 95 10 20 chr4 87234448 87234753 -115093594 + AluY SINE Alu 1 302 -9 2432 97 128 13 chr4 87234753 87235069 -115093278 - MSTC LTR MaLR -57 371 2 378 233 11 0 chr4 87235613 87235703 -115092644 - MER5A DNA MER1_type -90 99 9 320 183 86 114 chr4 87235734 87235824 -115092523 + MIR SINE MIR 34 119 -143 2115 107 11 0 chr4 87235824 87236132 -115092215 - AluSp SINE Alu 0 311 1 320 183 86 114 chr4 87236132 87236215 -115092132 + MIR SINE MIR 119 203 -59 201 197 34 111 chr4 87236608 87236725 -115091622 - MIR SINE MIR -65 197 90 218 146 18 91 chr4 87236725 87236780 -115091567 - MIR3 SINE MIR -40 168 118 809 273 80 0 chr4 87236890 87237128 -115091219 + MIR SINE MIR 1 257 -5 956 178 86 0 chr4 87237590 87237787 -115090560 + MER20 DNA MER1_type 1 214 -5 213 358 25 25 chr4 87237819 87237900 -115090447 - L3 LINE CR1 -25 1552 1472 2278 101 0 7 chr4 87238155 87238453 -115089894 - AluY SINE Alu -15 296 1 448 164 78 9 chr4 87238473 87238589 -115089758 - L1ME3A LINE L1 -5 6165 6042 41713 69 2 2 chr4 87238597 87244742 -115083605 + L1PA5 LINE L1 11 6154 0 1191 227 36 98 chr4 87244742 87245209 -115083138 - L1ME3A LINE L1 -114 6056 5619 1057 255 124 52 chr4 87245230 87245673 -115082674 - MER50 LTR ERV1 -23 711 237 419 240 240 55 chr4 87245677 87245931 -115082416 - MER50 LTR ERV1 -433 301 1 482 151 21 32 chr4 87245931 87246024 -115082323 - L1ME3A LINE L1 -604 5560 5469 515 137 74 0 chr4 87246166 87246261 -115082086 - MER53 DNA DNA -71 118 17 2101 113 0 52 chr4 87246641 87246967 -115081380 - AluSx SINE Alu 0 312 4 2189 126 0 3 chr4 87247122 87247423 -115080924 - AluSx SINE Alu -12 300 1 3660 117 2 4 chr4 87247543 87248054 -115080293 - MER9 LTR ERVK 0 511 2 840 129 30 198 chr4 87249796 87250059 -115078288 + MER20 DNA MER1_type 1 219 0 2061 132 0 0 chr4 87250550 87250838 -115077509 - AluSx SINE Alu -24 288 1 326 225 12 12 chr4 87251333 87251413 -115076934 - Tigger5 DNA MER2_type -8 2315 2236 332 290 62 43 chr4 87251525 87251687 -115076660 - MER5B DNA MER1_type -11 167 3 284 170 0 0 chr4 87251840 87251887 -115076460 + LTR54 LTR ERV1 402 448 -62 279 0 0 0 chr4 87251887 87251918 -115076429 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 759 138 0 9 chr4 87252835 87252951 -115075396 + FLAM_C SINE Alu 2 116 -27 207 0 0 0 chr4 87252951 87252974 -115075373 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 2628 64 0 0 chr4 87253003 87253314 -115075033 - AluY SINE Alu 0 311 1 213 172 0 0 chr4 87254261 87254325 -115074022 + (TA)n Simple_repeat Simple_repeat 1 64 0 2480 72 0 0 chr4 87254325 87254617 -115073730 - AluY SINE Alu -19 292 1 219 254 0 63 chr4 87254709 87254772 -115073575 + L2 LINE L2 3255 3313 0 435 244 193 0 chr4 87255101 87255236 -115073111 + LTR21A LTR ERV1 100 260 -245 913 165 67 21 chr4 87255350 87255544 -115072803 + LTR21A LTR ERV1 284 486 -19 9020 22 1 283 chr4 87255978 87257907 -115070440 + SVA Other Other 1 1386 0 1844 191 147 55 chr4 87258087 87258701 -115069646 - MER31-int LTR ERV1 -1603 3333 2664 556 99 44 11 chr4 87258805 87258896 -115069451 - AluS SINE Alu -217 96 3 2302 144 8 14 chr4 87258898 87259258 -115069089 + Tigger1 DNA MER2_type 2061 2418 0 281 310 90 21 chr4 87259407 87259552 -115068795 + MIR SINE MIR 54 208 -54 333 0 0 0 chr4 87261216 87261253 -115067094 + (T)n Simple_repeat Simple_repeat 1 37 0 1449 12 0 0 chr4 87261575 87261735 -115066612 + L1PA5 LINE L1 5986 6145 -9 2063 124 0 3 chr4 87261906 87262196 -115066151 + AluSx SINE Alu 1 289 -23 272 309 9 9 chr4 87264058 87264168 -115064179 + L2 LINE L2 3182 3291 -22 1699 180 7 23 chr4 87264556 87264862 -115063485 - AluJo SINE Alu -11 301 1 539 147 233 9 chr4 87264979 87265095 -115063252 + FLAM_C SINE Alu 2 143 0 2098 91 72 0 chr4 87265504 87265780 -115062567 + AluSp SINE Alu 1 296 -17 414 57 0 0 chr4 87265782 87265835 -115062512 + (TA)n Simple_repeat Simple_repeat 1 53 0 243 364 33 8 chr4 87266543 87266664 -115061683 - MER5A DNA MER1_type 0 189 66 219 173 13 40 chr4 87267525 87267600 -115060747 + (TAA)n Simple_repeat Simple_repeat 1 73 0 273 308 39 15 chr4 87268772 87268902 -115059445 - MIR SINE MIR -110 152 20 927 154 82 3 chr4 87269026 87269410 -115058937 - LTR54B LTR ERV1 0 510 1 1252 161 17 96 chr4 87269434 87269725 -115058622 + AluJo SINE Alu 31 298 -14 605 238 58 26 chr4 87269848 87270037 -115058310 + MIR SINE MIR 40 234 -28 872 121 0 0 chr4 87270167 87270283 -115058064 + FLAM_C SINE Alu 1 116 -17 33 0 0 0 chr4 87270291 87270324 -115058023 + AT_rich Low_complexity Low_complexity 1 33 0 2447 78 3 0 chr4 87270409 87270705 -115057642 + AluSp SINE Alu 1 297 -16 2172 89 7 0 chr4 87270710 87271032 -115057315 + AluSp SINE Alu 3 326 0 2251 96 7 7 chr4 87271038 87271329 -115057018 + AluSg SINE Alu 1 291 -19 2500 97 119 7 chr4 87271654 87272057 -115056290 + LTR7 LTR ERV1 1 448 -2 1315 134 29 25 chr4 87272493 87272567 -115055780 + L1M2 LINE L1 2550 2622 -4227 2464 111 60 16 chr4 87272567 87272998 -115055349 + LTR7 LTR ERV1 1 450 0 1315 134 29 25 chr4 87272998 87273162 -115055185 + L1M2 LINE L1 2622 2789 -4060 * 5788 169 31 10 chr4 87273141 87274328 -115054019 + L1M2 LINE L1 3880 5091 -1757 381 64 0 0 chr4 87274604 87274651 -115053696 - Alu SINE Alu -261 47 1 551 149 0 0 chr4 87274666 87274753 -115053594 - MER115 DNA AcHobo -95 598 512 1548 204 11 0 chr4 87275051 87275330 -115053017 + AluJb SINE Alu 15 296 -16 335 303 17 0 chr4 87275341 87275460 -115052887 - L2 LINE L2 -1045 2269 2149 248 149 254 45 chr4 87275861 87275928 -115052419 - L2 LINE L2 0 3313 3233 1284 100 0 6 chr4 87276011 87276181 -115052166 - AluY SINE Alu -142 169 1 328 267 0 0 chr4 87276184 87276259 -115052088 - LTR8A LTR ERV1 -461 266 192 * 702 163 0 71 chr4 87276254 87276395 -115051952 + MER21B LTR ERV1 719 849 -14 2247 128 0 0 chr4 87276449 87276761 -115051586 - AluSx SINE Alu 0 312 1 2308 120 88 52 chr4 87276786 87277194 -115051153 + LTR9 LTR ERV1 1 423 -189 2068 101 43 4 chr4 87277195 87277496 -115050851 + AluSq SINE Alu 2 313 0 1477 169 51 51 chr4 87278110 87278303 -115050044 - AluJo SINE Alu -17 295 100 2208 118 64 14 chr4 87278303 87278660 -115049687 + THE1C LTR MaLR 1 375 0 1477 169 51 51 chr4 87278660 87278761 -115049586 - AluJo SINE Alu -211 101 1 213 296 45 11 chr4 87279296 87279384 -115048963 + MER5A DNA MER1_type 26 116 -73 924 192 37 116 chr4 87279994 87280400 -115047947 + L1MC5 LINE L1 7487 7860 -101 1342 152 9 22 chr4 87280607 87280831 -115047516 + AluJb SINE Alu 84 304 -8 2043 136 3 19 chr4 87280958 87281274 -115047073 + AluSx SINE Alu 1 311 -1 233 56 0 28 chr4 87281274 87281310 -115047037 + (GGGAA)n Simple_repeat Simple_repeat 3 37 0 307 139 0 0 chr4 87281311 87281354 -115046993 - AluJ/FLAM SINE Alu -236 66 24 1498 144 33 44 chr4 87281373 87281643 -115046704 + AluJo SINE Alu 26 292 -20 729 280 127 30 chr4 87281751 87282307 -115046040 - L2 LINE L2 -342 2971 2289 1949 148 17 0 chr4 87282592 87282889 -115045458 - AluJb SINE Alu -2 310 9 416 147 0 15 chr4 87283078 87283146 -115045201 - MER96 DNA MER1_type? 0 175 109 437 265 113 9 chr4 87383272 87383502 -114944845 + L1MA9 LINE L1 6020 6273 -39 30 0 0 0 chr4 87383523 87383553 -114944794 + AT_rich Low_complexity Low_complexity 1 30 0 2430 66 0 7 chr4 87383681 87383982 -114944365 - AluY SINE Alu -12 299 1 342 67 0 0 chr4 87384542 87384587 -114943760 - Alu SINE Alu -254 45 1 2158 116 7 0 chr4 87384590 87384883 -114943464 - AluSx SINE Alu -17 295 1 308 317 156 6 chr4 87384927 87385107 -114943240 - MIR SINE MIR 0 262 56 2276 112 3 0 chr4 87385270 87385575 -114942772 + AluSq SINE Alu 1 306 -7 24 0 0 0 chr4 87388128 87388152 -114940195 + AT_rich Low_complexity Low_complexity 1 24 0 55 0 0 0 chr4 87388173 87388228 -114940119 + AT_rich Low_complexity Low_complexity 1 55 0 258 327 52 17 chr4 87388715 87389064 -114939283 - L1M4 LINE L1 -3419 2727 2367 347 274 45 13 chr4 87389531 87389688 -114938659 - HAL1 LINE L1 -833 1674 1513 464 254 0 155 chr4 87389825 87390038 -114938309 - MIR SINE MIR -55 207 28 441 289 103 31 chr4 87390050 87390244 -114938103 - HAL1 LINE L1 -1133 1374 1167 435 89 0 0 chr4 87390325 87390381 -114937966 + AluJ/FLAM SINE Alu 24 79 -233 25 31 0 0 chr4 87390483 87390515 -114937832 + AT_rich Low_complexity Low_complexity 1 32 0 407 163 35 6 chr4 87390520 87390692 -114937655 + (TA)n Simple_repeat Simple_repeat 2 178 0 61 0 0 0 chr4 87390693 87390754 -114937593 + AT_rich Low_complexity Low_complexity 1 61 0 333 246 0 91 chr4 87390754 87390864 -114937483 + L1MC4 LINE L1 6604 6703 -1339 189 0 0 0 chr4 87390864 87390885 -114937462 + (TA)n Simple_repeat Simple_repeat 2 22 0 1911 112 60 0 chr4 87390885 87391153 -114937194 - AluSg SINE Alu -17 293 10 2336 97 0 0 chr4 87391171 87391470 -114936877 - AluY SINE Alu -12 299 1 420 20 0 0 chr4 87391471 87391520 -114936827 + (TTTC)n Simple_repeat Simple_repeat 4 52 0 1090 107 0 0 chr4 87391520 87391669 -114936678 - AluSg/x SINE Alu 0 310 162 655 116 0 0 chr4 87391770 87391856 -114936491 + AluSg/x SINE Alu 206 291 -21 598 229 8 8 chr4 87391864 87391995 -114936352 + FLAM_A SINE Alu 1 131 -2 2185 118 0 23 chr4 87392491 87392795 -114935552 - AluSq SINE Alu -16 297 1 38 0 0 0 chr4 87393102 87393140 -114935207 + AT_rich Low_complexity Low_complexity 1 38 0 865 141 0 23 chr4 87393145 87393273 -114935074 - AluJb SINE Alu -187 125 1 1800 204 30 28 chr4 87393653 87394084 -114934263 - MLT1C LTR MaLR 0 467 36 1144 128 34 25 chr4 87394177 87394381 -114933966 - AluJb SINE Alu -2 310 105 605 268 115 38 chr4 87394524 87394863 -114933484 + MLT1F1 LTR MaLR 186 550 -17 269 128 2 53 chr4 87395241 87395298 -114933049 + LTR41 LTR ERVL 721 795 0 1455 208 53 0 chr4 87395298 87395640 -114932707 + L1MC4 LINE L1 6892 7251 -791 279 309 0 32 chr4 87395733 87395827 -114932520 + MIR SINE MIR 119 209 -53 703 325 98 24 chr4 87395990 87396408 -114931939 + L3 LINE CR1 1102 1550 -27 2134 123 0 45 chr4 87396435 87396745 -114931602 - AluSx SINE Alu -16 296 1 823 143 0 0 chr4 87396864 87396990 -114931357 - AluSq/x SINE Alu -187 126 1 384 279 72 103 chr4 87397028 87397083 -114931264 - HAL1 LINE L1 -1429 1078 1023 2054 132 3 3 chr4 87397083 87397378 -114930969 - AluSc SINE Alu -14 295 1 384 279 72 103 chr4 87397378 87397391 -114930956 - HAL1 LINE L1 -1484 1023 1011 2496 56 3 0 chr4 87397391 87397693 -114930654 - AluY SINE Alu -8 303 1 384 279 72 103 chr4 87397693 87397913 -114930434 - HAL1 LINE L1 -1496 1011 798 1690 180 39 7 chr4 87398006 87398172 -114930175 - AluJb SINE Alu -19 293 113 192 40 0 0 chr4 87398172 87398197 -114930150 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1690 180 39 7 chr4 87398197 87398314 -114930033 - AluJb SINE Alu -199 113 1 288 190 17 0 chr4 87398314 87398372 -114929975 - MER116 DNA Mariner -16 64 6 280 247 22 0 chr4 87398381 87398470 -114929877 + Charlie7 DNA MER1_type 2522 2612 0 250 369 53 11 chr4 87398479 87398666 -114929681 + MIR SINE MIR 22 216 -46 22 80 0 0 chr4 87398718 87398768 -114929579 + AT_rich Low_complexity Low_complexity 1 50 0 25 31 0 0 chr4 87399028 87399060 -114929287 + AT_rich Low_complexity Low_complexity 1 32 0 28 48 0 0 chr4 87399236 87399278 -114929069 + AT_rich Low_complexity Low_complexity 1 42 0 38 51 0 0 chr4 87399507 87399566 -114928781 + AT_rich Low_complexity Low_complexity 1 59 0 855 150 0 0 chr4 87399621 87399748 -114928599 + FLAM_C SINE Alu 1 127 -6 207 213 64 0 chr4 87399762 87399809 -114928538 + L2 LINE L2 3263 3312 -1 807 171 8 0 chr4 87399815 87399944 -114928403 - FLAM_C SINE Alu -3 130 1 207 0 0 0 chr4 87399947 87399970 -114928377 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 585 296 187 52 chr4 87401052 87401280 -114927067 + HAL1 LINE L1 835 1031 -1476 2198 121 0 34 chr4 87401280 87401603 -114926744 + AluSx SINE Alu 1 312 0 585 296 187 52 chr4 87401603 87402106 -114926241 + HAL1 LINE L1 1031 1665 -842 1899 165 0 3 chr4 87403305 87403608 -114924739 + AluJo SINE Alu 3 304 -8 1937 189 60 44 chr4 87403712 87404209 -114924138 + MLT1D LTR MaLR 1 505 0 2140 103 13 7 chr4 87404369 87404671 -114923676 + AluSg SINE Alu 1 304 -6 22 70 0 0 chr4 87404728 87404771 -114923576 + AT_rich Low_complexity Low_complexity 1 43 0 2109 128 3 13 chr4 87405798 87406103 -114922244 + AluSx SINE Alu 1 302 -10 28 48 0 0 chr4 87406122 87406164 -114922183 + AT_rich Low_complexity Low_complexity 1 42 0 598 196 45 45 chr4 87406448 87406581 -114921766 - FLAM_C SINE Alu 0 133 1 1213 194 9 0 chr4 87406667 87406883 -114921464 - AluSg/x SINE Alu -9 303 86 482 321 60 13 chr4 87407096 87407398 -114920949 - L1MC4a LINE L1 -1938 5870 5555 843 181 0 0 chr4 87407741 87407874 -114920473 - FLAM_C SINE Alu 0 133 1 2164 122 6 6 chr4 87408381 87408692 -114919655 + AluSx SINE Alu 1 311 -1 1929 143 42 0 chr4 87409496 87409782 -114918565 - AluSx SINE Alu -14 298 1 633 147 18 0 chr4 87409824 87409933 -114918414 - FLAM_C SINE Alu -32 111 1 269 147 27 27 chr4 87410775 87410850 -114917497 + (TA)n Simple_repeat Simple_repeat 1 75 0 780 137 0 8 chr4 87410870 87410987 -114917360 - FLAM_C SINE Alu -25 118 3 1483 93 70 0 chr4 87411008 87411223 -114917124 + MER30 DNA MER1_type 1 230 0 669 275 136 16 chr4 87411279 87411537 -114916810 - MLT1L LTR MaLR 0 615 327 22 0 0 0 chr4 87412041 87412063 -114916284 + AT_rich Low_complexity Low_complexity 1 22 0 2018 164 3 0 chr4 87412783 87413094 -114915253 + AluSx SINE Alu 1 312 0 1424 162 4 9 chr4 87413771 87414000 -114914347 + AluJo SINE Alu 9 236 -76 459 113 0 0 chr4 87414038 87414100 -114914247 + AluS SINE Alu 2 63 -255 1624 161 41 14 chr4 87414645 87414937 -114913410 + AluJo SINE Alu 9 308 -4 1988 147 0 25 chr4 87415765 87416085 -114912262 + AluJb SINE Alu 1 312 0 784 219 53 0 chr4 87416153 87416322 -114912025 - MER5B DNA MER1_type 0 178 1 2229 127 3 0 chr4 87416363 87416671 -114911676 - AluSg SINE Alu -1 309 1 2114 115 7 3 chr4 87416671 87416967 -114911380 - AluSx SINE Alu -15 297 1 2016 212 62 12 chr4 87418081 87418585 -114909762 - MER119 DNA MER1_type -50 533 5 1997 140 30 3 chr4 87419071 87419371 -114908976 - AluJb SINE Alu -4 308 1 618 199 62 0 chr4 87419839 87420000 -114908347 - MER67A LTR ERV1 0 543 373 280 224 158 91 chr4 87420021 87420186 -114908161 - MER67C LTR ERV1 -313 397 222 1385 131 0 15 chr4 87420189 87420395 -114907952 + AluSq SINE Alu 4 206 -107 981 231 32 44 chr4 87420410 87420752 -114907595 - MER67B LTR ERV1 -323 338 1 347 227 0 0 chr4 87420752 87420810 -114907537 - MER67A LTR ERV1 -463 80 23 764 185 14 7 chr4 87420810 87420956 -114907391 + FRAM SINE Alu 1 146 -30 2359 118 91 5 chr4 87422686 87423094 -114905253 + MER65A LTR ERV1 1 443 -2 256 209 33 44 chr4 87423545 87423636 -114904711 + MER34 LTR ERV1 449 538 -4 661 268 70 24 chr4 87423716 87424003 -114904344 + LTR33A LTR ERVL 222 521 -2 231 221 84 21 chr4 87424301 87424396 -114903951 - LTR48 LTR ERV1 -291 496 396 527 184 43 130 chr4 87424459 87424533 -114903814 - MER34C LTR ERV1 -357 228 149 1728 122 223 14 chr4 87424533 87424887 -114903460 + MSTA LTR MaLR 1 428 0 9433 132 18 28 chr4 87424889 87426483 -114901864 + MSTA-int LTR MaLR 3 1580 0 1590 113 256 12 chr4 87426483 87426827 -114901520 + MSTA LTR MaLR 1 428 0 527 184 43 130 chr4 87426827 87426955 -114901392 - MER34C LTR ERV1 -435 150 40 197 378 151 22 chr4 87427242 87427427 -114900920 - L2 LINE L2 -20 3252 3044 3501 132 7 2 chr4 87427491 87428060 -114900287 + MER41B LTR ERV1 1 572 -63 1642 149 51 22 chr4 87428161 87428437 -114899910 - AluJb SINE Alu -26 286 3 1854 159 7 29 chr4 87428587 87428895 -114899452 - AluJb SINE Alu -6 306 6 547 238 47 17 chr4 87428983 87429145 -114899202 - MLT1H1 LTR MaLR -337 212 1 695 230 136 28 chr4 87429170 87429487 -114898860 - L1MC4a LINE L1 -1272 6536 6186 1607 169 11 4 chr4 87429534 87429800 -114898547 - AluJo SINE Alu -44 268 1 2282 104 0 13 chr4 87430192 87430500 -114897847 - AluY SINE Alu -7 304 1 180 0 0 0 chr4 87430678 87430698 -114897649 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 835 144 8 0 chr4 87431056 87431181 -114897166 + FLAM_C SINE Alu 1 126 -7 26 30 0 0 chr4 87431183 87431216 -114897131 + AT_rich Low_complexity Low_complexity 1 33 0 2083 126 0 3 chr4 87431218 87431511 -114896836 + AluSc SINE Alu 1 292 -17 182 279 49 16 chr4 87432281 87432342 -114896005 + L2 LINE L2 1378 1440 -1874 1043 232 4 21 chr4 87433260 87433497 -114894850 - MIR SINE MIR -29 233 1 1437 132 166 11 chr4 87433837 87434102 -114894245 - AluJb SINE Alu -6 306 1 378 0 0 0 chr4 87434249 87434291 -114894056 + (CA)n Simple_repeat Simple_repeat 2 43 0 2088 119 0 3 chr4 87434483 87434776 -114893571 + AluSx SINE Alu 1 292 -20 1140 182 0 10 chr4 87435267 87435465 -114892882 + AluJo SINE Alu 87 282 -30 33 0 0 0 chr4 87435501 87435534 -114892813 + AT_rich Low_complexity Low_complexity 1 33 0 44281 45 3 0 chr4 87435729 87441862 -114886485 - L1PA4 LINE L1 0 6155 2 560 58 0 92 chr4 87442282 87442369 -114885978 - AluSp/q SINE Alu -6 307 229 962 169 0 69 chr4 87442469 87442516 -114885831 - AluJo SINE Alu -136 176 127 2096 77 0 7 chr4 87442516 87442788 -114885559 - AluSc SINE Alu -39 270 1 962 169 0 69 chr4 87442788 87442929 -114885418 - AluJo SINE Alu -185 127 1 40 21 0 0 chr4 87443193 87443240 -114885107 + AT_rich Low_complexity Low_complexity 1 47 0 1774 160 14 10 chr4 87443841 87444134 -114884213 + AluJo SINE Alu 1 294 -18 1046 120 0 7 chr4 87444452 87444602 -114883745 - AluSg/x SINE Alu -6 306 158 233 378 53 36 chr4 87444825 87445182 -114883165 - L2 LINE L2 -464 2850 2488 571 193 83 0 chr4 87445314 87445423 -114882924 + L2 LINE L2 3191 3308 -5 26 50 0 0 chr4 87445651 87445691 -114882656 + AT_rich Low_complexity Low_complexity 1 40 0 692 249 81 0 chr4 87445725 87445898 -114882449 - MIR SINE MIR -10 252 66 184 283 33 17 chr4 87445966 87446026 -114882321 - MIR SINE MIR -136 126 66 2228 100 3 0 chr4 87446392 87446683 -114881664 - AluSq SINE Alu -21 292 1 21 36 0 0 chr4 87446788 87446816 -114881531 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr4 87446855 87446886 -114881461 + AT_rich Low_complexity Low_complexity 1 31 0 1847 180 3 0 chr4 87447143 87447454 -114880893 + AluJb SINE Alu 1 312 0 1782 166 7 10 chr4 87447658 87447953 -114880394 + AluSx SINE Alu 5 298 -14 2241 109 0 0 chr4 87448005 87448299 -114880048 + AluSx SINE Alu 1 294 -18 2329 98 0 0 chr4 87448467 87448762 -114879585 + AluSx SINE Alu 3 297 -15 282 164 115 0 chr4 87449775 87449836 -114878511 + L1MC4a LINE L1 5318 5385 -777 265 156 0 0 chr4 87449846 87449891 -114878456 + L1MC4a LINE L1 5355 5399 -747 28 61 0 0 chr4 87449910 87449959 -114878388 + AT_rich Low_complexity Low_complexity 1 49 0 327 286 192 33 chr4 87449972 87450278 -114878069 + L1MC4a LINE L1 5485 5648 -473 288 0 0 0 chr4 87450300 87450332 -114878015 + (A)n Simple_repeat Simple_repeat 1 32 0 567 159 177 18 chr4 87450344 87450457 -114877890 + FLAM_C SINE Alu 3 133 0 29 78 0 0 chr4 87450537 87450601 -114877746 + AT_rich Low_complexity Low_complexity 1 64 0 1398 209 0 0 chr4 87450761 87451000 -114877347 + AluJb SINE Alu 1 239 -73 688 209 23 0 chr4 87451000 87451129 -114877218 - MER5A DNA MER1_type -57 132 1 190 128 90 0 chr4 87451328 87451374 -114876973 - MIR SINE MIR -112 150 103 191 274 40 89 chr4 87451402 87451458 -114876889 - L2 LINE L2 -24 3289 3232 2445 58 6 13 chr4 87451458 87451770 -114876577 + AluY SINE Alu 1 310 -1 191 274 40 89 chr4 87451770 87451837 -114876510 - L2 LINE L2 -81 3232 3172 1455 84 93 19 chr4 87452227 87452441 -114875906 - MER30 DNA MER1_type 0 230 1 197 333 135 19 chr4 87452767 87452923 -114875424 - L2 LINE L2 -1303 2011 1838 1512 127 4 0 chr4 87454082 87454310 -114874037 + AluSg/x SINE Alu 84 312 0 291 197 98 0 chr4 87454396 87454457 -114873890 - MIR SINE MIR -66 142 76 1753 111 13 104 chr4 87454488 87454804 -114873543 - AluJb SINE Alu -25 287 1 2455 94 3 0 chr4 87458941 87459249 -114869098 + AluSq SINE Alu 1 309 -4 1001 154 0 0 chr4 87459479 87459635 -114868712 + AluSg/x SINE Alu 138 293 -19 269 154 154 0 chr4 87460567 87460619 -114867728 + MER53 DNA DNA 2 61 -128 757 202 0 0 chr4 87460782 87460911 -114867436 - FLAM_C SINE Alu -4 129 1 2210 117 0 10 chr4 87461866 87462174 -114866173 + AluSx SINE Alu 1 305 -7 24 0 0 0 chr4 87462444 87462468 -114865879 + AT_rich Low_complexity Low_complexity 1 24 0 2210 122 0 3 chr4 87462622 87462926 -114865421 + AluSx SINE Alu 1 303 -9 2105 134 0 13 chr4 87463732 87464045 -114864302 + AluSx SINE Alu 1 309 -3 1731 176 3 3 chr4 87464224 87464513 -114863834 + AluJb SINE Alu 1 289 -23 1885 207 87 21 chr4 87464636 87465071 -114863276 + LTR16B LTR ERVL 1 464 0 883 194 110 73 chr4 87465108 87465258 -114863089 + MLT1I LTR MaLR 20 163 -246 2536 50 0 7 chr4 87465258 87465555 -114862792 - AluY SINE Alu -16 295 1 883 194 110 73 chr4 87465555 87465745 -114862602 + MLT1I LTR MaLR 163 382 -27 342 200 15 0 chr4 87465780 87465845 -114862502 + Tigger3(Golem) DNA MER2_type 15 80 -2949 492 182 81 20 chr4 87465970 87466069 -114862278 + Tigger3(Golem) DNA MER2_type 2934 3038 0 360 236 118 7 chr4 87466596 87466740 -114861607 - MER104 DNA Tc2 -2 178 19 2337 102 3 10 chr4 87466740 87467053 -114861294 + AluSp SINE Alu 2 312 -1 820 139 0 29 chr4 87467281 87467418 -114860929 - FLAM_C SINE Alu -8 135 3 1698 139 95 11 chr4 87467896 87468170 -114860177 - AluJb SINE Alu -15 297 1 22 0 0 0 chr4 87469032 87469054 -114859293 + AT_rich Low_complexity Low_complexity 1 22 0 2163 108 6 19 chr4 87469774 87470088 -114858259 - AluSg SINE Alu 0 310 1 1154 123 0 0 chr4 87470309 87470472 -114857875 + AluSg/x SINE Alu 142 304 -8 21 36 0 0 chr4 87471286 87471314 -114857033 + AT_rich Low_complexity Low_complexity 1 28 0 2231 101 14 0 chr4 87471366 87471662 -114856685 - AluSx SINE Alu -12 300 1 21 0 0 0 chr4 87471673 87471694 -114856653 + AT_rich Low_complexity Low_complexity 1 21 0 1637 158 65 11 chr4 87472046 87472325 -114856022 + AluJb SINE Alu 1 294 -18 1315 159 14 0 chr4 87473364 87473578 -114854769 - AluJb SINE Alu -10 302 86 330 156 189 44 chr4 87473647 87473737 -114854610 + L1ME3A LINE L1 6068 6170 0 1906 147 3 3 chr4 87473843 87474135 -114854212 + AluJb SINE Alu 5 296 -16 477 235 211 15 chr4 87474663 87474867 -114853480 - MIR SINE MIR -16 246 3 217 265 0 59 chr4 87475105 87475173 -114853174 + L2 LINE L2 3206 3269 -3 28 0 0 0 chr4 87475246 87475274 -114853073 + AT_rich Low_complexity Low_complexity 1 28 0 636 258 149 54 chr4 87476898 87477040 -114851307 + L1MC/D LINE L1 5354 5481 -887 2188 119 0 3 chr4 87477040 87477342 -114851005 + AluSx SINE Alu 1 301 -11 636 258 149 54 chr4 87477342 87477602 -114850745 + L1MC/D LINE L1 5481 5823 -545 1758 170 20 0 chr4 87477604 87477898 -114850449 + AluJo SINE Alu 1 300 -12 223 240 0 0 chr4 87477996 87478006 -114850341 + (CATATA)n Simple_repeat Simple_repeat 2 11 -40 2309 90 0 10 chr4 87478006 87478306 -114850041 + AluSx SINE Alu 1 297 -15 223 240 0 0 chr4 87478306 87478345 -114850002 + (CATATA)n Simple_repeat Simple_repeat 10 51 0 847 268 115 31 chr4 87478488 87478768 -114849579 + L1ME4a LINE L1 5526 5850 -271 2256 119 0 3 chr4 87478768 87479078 -114849269 + AluSx SINE Alu 1 309 -3 847 268 115 31 chr4 87479078 87479189 -114849158 + L1ME4a LINE L1 5850 5950 -171 1839 140 0 17 chr4 87479714 87480006 -114848341 - AluJb SINE Alu -3 309 23 23 33 0 0 chr4 87480006 87480036 -114848311 + AT_rich Low_complexity Low_complexity 1 30 0 819 130 0 0 chr4 87480490 87480613 -114847734 - FLAM_C SINE Alu -20 123 1 207 114 0 0 chr4 87482045 87482080 -114846267 + (TG)n Simple_repeat Simple_repeat 2 36 0 234 0 0 0 chr4 87482229 87482255 -114846092 + (CA)n Simple_repeat Simple_repeat 2 27 0 485 228 89 17 chr4 87482255 87482435 -114845912 - Zaphod DNA AcHobo -175 3856 3664 1422 203 114 58 chr4 87482435 87482525 -114845822 - LTR48B LTR ERV1 0 644 560 2071 98 0 37 chr4 87482525 87482822 -114845525 - AluSx SINE Alu -7 305 20 1422 203 114 58 chr4 87482822 87483160 -114845187 - LTR48B LTR ERV1 -84 560 192 809 237 85 48 chr4 87483162 87483457 -114844890 - MER39 LTR ERV1 -184 523 218 1660 175 45 50 chr4 87483546 87483866 -114844481 + MER21B-int LTR ERV1 3765 4087 -104 2561 68 0 0 chr4 87483866 87484178 -114844169 - AluY SINE Alu 0 312 1 1660 175 45 50 chr4 87484178 87484231 -114844116 + MER21B-int LTR ERV1 4087 4139 -52 321 260 135 10 chr4 87484334 87484430 -114843917 + MER21B LTR ERV1 13 120 -743 274 103 0 0 chr4 87484435 87484474 -114843873 - MSTA LTR MaLR 0 428 390 2167 132 3 0 chr4 87484474 87484778 -114843569 + AluSx SINE Alu 1 305 -7 825 200 0 35 chr4 87484782 87484915 -114843432 + AluJo SINE Alu 5 132 -180 2280 112 3 0 chr4 87484915 87485219 -114843128 + AluSg SINE Alu 1 305 -5 825 200 0 35 chr4 87485219 87485255 -114843092 + AluJo SINE Alu 132 168 -144 2104 104 14 7 chr4 87485256 87485545 -114842802 + AluSx SINE Alu 16 306 -6 1396 138 43 82 chr4 87485552 87485856 -114842491 + AluJo SINE Alu 1 292 -20 1264 233 105 26 chr4 87486268 87486698 -114841649 + LTR16B LTR ERVL 1 464 0 1912 161 0 13 chr4 87486879 87487190 -114841157 - AluJb SINE Alu 0 312 6 801 241 0 0 chr4 87488090 87488248 -114840099 + FRAM SINE Alu 2 159 -7 296 284 55 0 chr4 87488263 87488390 -114839957 - L1ME4a LINE L1 -61 6060 5927 195 42 0 0 chr4 87488399 87488423 -114839924 + (TTATA)n Simple_repeat Simple_repeat 4 27 0 1856 118 26 0 chr4 87488425 87488696 -114839651 - AluSx SINE Alu -19 293 16 26 64 0 0 chr4 87488730 87488777 -114839570 + AT_rich Low_complexity Low_complexity 1 47 0 1737 162 50 6 chr4 87488782 87489103 -114839244 + MER34C LTR ERV1 1 335 -250 609 163 0 102 chr4 87489110 87489257 -114839090 - FLAM_C SINE Alu 0 133 2 479 296 0 0 chr4 87489400 87489515 -114838832 - L2 LINE L2 -17 3255 3141 204 289 0 0 chr4 87489688 87489740 -114838607 - L2 LINE L2 -338 2975 2924 1540 206 31 3 chr4 87489849 87490140 -114838207 - AluJb SINE Alu -13 299 1 2271 119 0 3 chr4 87490167 87490478 -114837869 + AluSx SINE Alu 1 310 -2 2338 106 0 0 chr4 87490499 87490800 -114837547 + AluY SINE Alu 1 301 -10 247 79 26 0 chr4 87490819 87490857 -114837490 + Alu SINE Alu 11 49 -250 1016 243 72 64 chr4 87490989 87491245 -114837102 - MER34C LTR ERV1 -38 551 299 2248 132 0 0 chr4 87491245 87491555 -114836792 - AluSx SINE Alu -2 310 1 1016 243 72 64 chr4 87491555 87491900 -114836447 - MER34C LTR ERV1 -290 299 1 2124 127 17 0 chr4 87492014 87492313 -114836034 + AluSx SINE Alu 9 312 0 2330 122 8 19 chr4 87492522 87492859 -114835488 - MER39 LTR ERV1 -10 697 363 4048 88 24 6 chr4 87492859 87493403 -114834944 - MER41A LTR ERV1 0 554 1 2330 122 8 19 chr4 87493403 87493427 -114834920 - MER39 LTR ERV1 -344 363 340 981 181 92 26 chr4 87493433 87493604 -114834743 - MER39 LTR ERV1 -425 282 91 2283 123 0 0 chr4 87493604 87493914 -114834433 + AluSq SINE Alu 1 310 -3 981 181 92 26 chr4 87493914 87493969 -114834378 - MER39 LTR ERV1 -616 91 41 1803 166 14 0 chr4 87493970 87494259 -114834088 + AluJo SINE Alu 1 293 -19 2049 126 9 31 chr4 87494262 87494620 -114833727 + AluSx SINE Alu 1 351 0 660 132 0 0 chr4 87494641 87494747 -114833600 + (GAAA)n Simple_repeat Simple_repeat 3 108 0 2107 136 3 0 chr4 87494776 87495077 -114833270 + AluSx SINE Alu 1 302 -10 254 91 159 0 chr4 87495081 87495125 -114833222 - MER39 LTR ERV1 -653 54 4 325 98 0 33 chr4 87495159 87495220 -114833127 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 204 283 0 0 chr4 87495657 87495703 -114832644 + (CA)n Simple_repeat Simple_repeat 1 46 0 1793 161 45 7 chr4 87495870 87496161 -114832186 - AluJb SINE Alu -10 302 1 2196 82 47 0 chr4 87496637 87496916 -114831431 - AluSg SINE Alu -18 292 1 1695 97 0 0 chr4 87497448 87497664 -114830683 + AluSg/x SINE Alu 84 299 -11 645 218 70 32 chr4 87497666 87497822 -114830525 - AluJo SINE Alu -24 288 127 528 202 0 0 chr4 87498107 87498196 -114830151 + MLT2B3 LTR ERVL 16 104 -450 12100 142 15 19 chr4 87498199 87498797 -114829550 + ERVL-B3 LTR ERVL 3868 4466 -1298 2264 120 0 0 chr4 87498797 87499097 -114829250 + AluSq SINE Alu 1 300 -13 12100 142 15 19 chr4 87499097 87500056 -114828291 + ERVL-B3 LTR ERVL 4466 5420 -344 1965 162 0 13 chr4 87500056 87500365 -114827982 + AluJo SINE Alu 6 310 -2 12100 142 15 19 chr4 87500365 87500701 -114827646 + ERVL-B3 LTR ERVL 5420 5756 -8 2025 119 10 17 chr4 87500701 87501003 -114827344 - AluSx SINE Alu -12 300 1 2720 177 79 19 chr4 87501016 87501537 -114826810 + MLT2B3 LTR ERVL 3 554 0 2097 141 7 0 chr4 87501568 87501872 -114826475 - AluSx SINE Alu -4 308 3 2431 94 0 0 chr4 87501891 87502198 -114826149 - AluSc SINE Alu -2 307 1 1870 117 37 60 chr4 87502473 87502773 -114825574 - AluSq SINE Alu -20 293 1 23 0 0 0 chr4 87503423 87503446 -114824901 + AT_rich Low_complexity Low_complexity 1 23 0 1289 144 4 48 chr4 87503913 87504102 -114824245 - AluJo SINE Alu -7 305 123 1950 123 7 42 chr4 87504102 87504247 -114824100 + AluSx SINE Alu 1 150 -176 2249 114 3 3 chr4 87504247 87504554 -114823793 + AluSq SINE Alu 1 307 -6 1950 123 7 42 chr4 87504554 87504745 -114823602 + AluSx SINE Alu 150 326 0 1289 144 4 48 chr4 87504745 87504781 -114823566 - AluJo SINE Alu -189 123 87 915 126 0 0 chr4 87505286 87505413 -114822934 + MER48 LTR ERV1 261 387 0 3253 128 2 11 chr4 87505413 87505891 -114822456 + HERVH48 LTR ERV1 1 474 -6180 23920 100 24 9 chr4 87505891 87509377 -114818970 + HERVH48 LTR ERV1 586 4122 -2532 7583 77 1 14 chr4 87509353 87510364 -114817983 + HERVH48 LTR ERV1 4670 5667 -987 * 1387 98 0 0 chr4 87510351 87510534 -114817813 + HERVH48 LTR ERV1 6472 6654 0 * 2335 104 32 0 chr4 87510534 87510850 -114817497 + MER48 LTR ERV1 1 326 -61 2019 175 112 10 chr4 87510867 87511285 -114817062 + LOR1b LTR ERV1 1 461 0 1025 175 40 45 chr4 87511763 87511963 -114816384 + AluJb SINE Alu 87 285 -27 845 206 0 29 chr4 87511994 87512164 -114816183 + FRAM SINE Alu 1 165 -1 2019 118 49 20 chr4 87512468 87512772 -114815575 + AluSq SINE Alu 1 313 0 2058 141 7 0 chr4 87513564 87514014 -114814333 + AluSx SINE Alu 1 452 0 2111 119 3 13 chr4 87514397 87514709 -114813638 + AluSg SINE Alu 1 309 -1 2003 100 3 3 chr4 87514709 87514994 -114813353 - L1PA13 LINE L1 -13 6150 5866 1564 218 107 21 chr4 87515000 87515647 -114812700 + MER50 LTR ERV1 10 734 0 361 104 0 0 chr4 87515647 87515695 -114812652 - L1PA13 LINE L1 -294 5869 5822 * 493 78 0 0 chr4 87515690 87515754 -114812593 + L1PA13 LINE L1 5748 5811 -350 923 172 32 38 chr4 87515908 87516094 -114812253 + AluJo SINE Alu 1 185 -127 2057 135 0 6 chr4 87516107 87516418 -114811929 + AluSx SINE Alu 1 309 -3 1832 163 10 0 chr4 87516433 87516727 -114811620 + AluSx SINE Alu 3 299 -13 813 279 135 34 chr4 87516744 87517239 -114811108 - MLT1H LTR MaLR -4 545 1 540 131 19 9 chr4 87517366 87517473 -114810874 + CT-rich Low_complexity Low_complexity 1 108 0 695 235 11 39 chr4 87517479 87517658 -114810689 - FRAM SINE Alu -7 169 1 546 161 0 0 chr4 87518341 87518428 -114809919 - MLT1B LTR MaLR -38 352 266 1136 188 0 28 chr4 87518434 87518689 -114809658 + L1 LINE L1 5096 5343 -803 * 2058 95 42 87 chr4 87518683 87518942 -114809405 + L1MA5A LINE L1 5891 6160 -137 249 57 0 0 chr4 87518942 87518977 -114809370 + (TG)n Simple_repeat Simple_repeat 2 36 0 2109 127 0 0 chr4 87518977 87519261 -114809086 - AluSx SINE Alu -27 285 2 2058 95 42 87 chr4 87519261 87519273 -114809074 + L1MA5A LINE L1 6159 6170 -127 4008 113 36 0 chr4 87519273 87519829 -114808518 + LTR19B LTR ERV1 5 580 0 2058 95 42 87 chr4 87519829 87519935 -114808412 + L1MA5A LINE L1 6170 6253 -44 2220 91 3 14 chr4 87519936 87520233 -114808114 + AluY SINE Alu 1 294 -17 1045 98 8 0 chr4 87520344 87520477 -114807870 - AluSq/x SINE Alu -178 134 1 932 88 8 8 chr4 87520477 87520602 -114807745 - MER57B LTR ERV1 -308 126 2 1281 184 0 0 chr4 87520825 87521031 -114807316 - ERVL-C2 LTR ERVL -3526 2238 2033 1032 292 60 34 chr4 87521036 87521115 -114807232 - ERVL-C2 LTR ERVL -4633 1060 985 2270 88 10 0 chr4 87521115 87521410 -114806937 + AluSx SINE Alu 1 298 -14 1032 292 60 34 chr4 87521410 87522182 -114806165 - ERVL-C2 LTR ERVL -4708 985 68 2198 130 0 0 chr4 87522244 87522551 -114805796 - AluSx SINE Alu -5 307 1 1173 74 0 0 chr4 87522551 87522686 -114805661 - AluSq/x SINE Alu -177 135 1 348 228 54 101 chr4 87522688 87522837 -114805510 - MLT2C2 LTR ERVL -2 462 254 279 165 55 138 chr4 87522853 87522962 -114805385 - MLT2C1 LTR ERVL -285 112 13 485 212 0 110 chr4 87522982 87523069 -114805278 - Charlie1 DNA MER1_type -2631 130 64 1520 210 14 3 chr4 87523069 87523359 -114804988 - AluJo SINE Alu -19 293 1 485 212 0 110 chr4 87523359 87523417 -114804930 - Charlie1 DNA MER1_type -2697 64 1 441 224 0 0 chr4 87523802 87523878 -114804469 - LTR8 LTR ERV1 -2 689 614 1569 117 0 0 chr4 87523883 87524089 -114804258 + AluSq SINE Alu 1 206 -107 871 139 10 92 chr4 87524101 87524299 -114804048 - LTR8A LTR ERV1 -523 168 1 1853 153 45 83 chr4 87524449 87524847 -114803500 - MER57A LTR ERV1 -9 394 12 189 107 0 0 chr4 87524847 87524875 -114803472 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1847 111 0 0 chr4 87524883 87525127 -114803220 - AluSx SINE Alu -40 272 29 1175 188 13 26 chr4 87525478 87525707 -114802640 + AluJo SINE Alu 1 226 -86 3541 151 60 44 chr4 87525724 87526407 -114801940 + LTR8A LTR ERV1 34 727 0 407 186 0 0 chr4 87526407 87526477 -114801870 + AluJo SINE Alu 223 292 -10 2102 114 0 0 chr4 87526478 87526751 -114801596 + AluSx SINE Alu 1 273 -39 1532 173 3 21 chr4 87526901 87527184 -114801163 - AluJb SINE Alu -14 298 21 2302 113 0 0 chr4 87527713 87528015 -114800332 - AluSx SINE Alu -10 302 1 3060 206 64 48 chr4 87528042 87528890 -114799457 + MER21B LTR ERV1 1 861 -2 1447 152 4 4 chr4 87529208 87529438 -114798909 + AluSg/x SINE Alu 82 311 -1 1735 198 83 3 chr4 87529736 87530074 -114798273 - MLT1A1 LTR MaLR 0 365 1 1085 119 165 5 chr4 87530330 87530524 -114797823 + MER30 DNA MER1_type 2 226 -4 2285 114 0 3 chr4 87530842 87531141 -114797206 + AluSx SINE Alu 1 298 -14 1956 138 7 3 chr4 87532235 87532532 -114795815 - AluSx SINE Alu -12 300 3 2686 129 29 7 chr4 87533538 87533957 -114794390 + MSTA LTR MaLR 1 428 0 493 0 65 0 chr4 87535084 87535161 -114793186 + (TA)n Simple_repeat Simple_repeat 1 82 0 221 267 118 56 chr4 87535256 87535451 -114792896 - L2 LINE L2 -545 2769 2563 255 93 0 0 chr4 87535689 87535732 -114792615 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 2241 129 3 0 chr4 87536383 87536692 -114791655 - AluSx SINE Alu -2 310 1 307 286 41 12 chr4 87536697 87536868 -114791479 - L1MC4a LINE L1 -1861 5947 5772 973 250 37 50 chr4 87536917 87537297 -114791050 - L1MC4a LINE L1 -717 5434 5299 1679 200 0 0 chr4 87537332 87537627 -114790720 + AluJo SINE Alu 5 299 -13 640 282 141 57 chr4 87537654 87537996 -114790351 - L1MC4a LINE L1 -916 5230 4918 192 40 0 0 chr4 87537996 87538021 -114790326 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2238 111 0 0 chr4 87538023 87538312 -114790035 - AluSx SINE Alu -23 289 1 640 282 141 57 chr4 87538312 87538406 -114789941 - L1MC4a LINE L1 -1228 4918 4754 2041 114 13 23 chr4 87538407 87538580 -114789767 - AluSx SINE Alu -9 303 133 4018 61 91 0 chr4 87538580 87539118 -114789229 - LTR14C LTR ERVK 0 587 1 2041 114 13 23 chr4 87539118 87539250 -114789097 - AluSx SINE Alu -179 133 1 25 31 0 0 chr4 87539299 87539331 -114789016 + AT_rich Low_complexity Low_complexity 1 32 0 264 30 0 0 chr4 87539331 87539364 -114788983 + (TTA)n Simple_repeat Simple_repeat 1 33 0 868 119 0 0 chr4 87539365 87539483 -114788864 - AluSq/x SINE Alu -194 118 1 392 311 72 69 chr4 87539563 87540414 -114787933 - L1MC4a LINE L1 -1542 4604 3785 838 148 7 28 chr4 87540562 87540704 -114787643 + FLAM_C SINE Alu 1 139 -4 2207 95 7 0 chr4 87541422 87541716 -114786631 - AluY SINE Alu -15 296 1 731 202 29 17 chr4 87542063 87542236 -114786111 - MER69A DNA AcHobo -1 176 2 180 0 0 0 chr4 87542653 87542673 -114785674 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 622 308 63 4 chr4 87543051 87543288 -114785059 + MIR SINE MIR 6 256 -6 2332 106 0 0 chr4 87543387 87543688 -114784659 - AluSx SINE Alu -11 301 1 1205 247 44 27 chr4 87543730 87544207 -114784140 - L1ME2 LINE L1 -6 6158 5674 758 212 40 25 chr4 87544212 87544410 -114783937 - L1ME2 LINE L1 -538 5626 5426 302 262 110 55 chr4 87544454 87544599 -114783748 - L1ME4a LINE L1 -17 6104 5952 228 273 0 0 chr4 87544600 87544688 -114783659 - L1MC4 LINE L1 -1340 6702 6615 1939 137 7 3 chr4 87544689 87544988 -114783359 - AluSq SINE Alu -13 300 1 349 242 20 20 chr4 87545014 87545113 -114783234 - MER5B DNA MER1_type -79 99 1 291 206 55 39 chr4 87545260 87545387 -114782960 - L1MC5 LINE L1 -14 8011 7832 24 32 0 0 chr4 87545651 87545682 -114782665 + AT_rich Low_complexity Low_complexity 1 31 0 263 321 48 60 chr4 87545852 87546020 -114782327 + L3 LINE CR1 475 640 -937 2040 146 3 16 chr4 87546038 87546354 -114781993 - AluSx SINE Alu 0 312 1 440 263 39 13 chr4 87546697 87546853 -114781494 - L1ME3A LINE L1 -14 6156 5997 243 0 0 0 chr4 87547540 87547567 -114780780 + (T)n Simple_repeat Simple_repeat 1 27 0 2539 39 7 3 chr4 87547757 87548065 -114780282 - AluY SINE Alu -2 309 1 2394 78 0 7 chr4 87548294 87548603 -114779744 - AluY SINE Alu -4 307 1 332 277 68 9 chr4 87549004 87549226 -114779121 - L1MC4a LINE L1 -280 5882 5646 * 2574 204 54 88 chr4 87549221 87549302 -114779045 + L1MC4 LINE L1 7089 7171 -871 1989 136 4 4 chr4 87549302 87549633 -114778714 - AluSx SINE Alu 0 335 5 2574 204 54 88 chr4 87549633 87550526 -114777821 + L1MC4 LINE L1 7171 8031 -11 255 256 62 81 chr4 87550601 87550683 -114777664 - L1MC4a LINE L1 -612 5509 5427 2355 97 0 13 chr4 87550683 87550994 -114777353 - AluSx SINE Alu -5 307 1 255 256 62 81 chr4 87550994 87551169 -114777178 - L1MC4a LINE L1 -694 5427 5260 1093 104 0 22 chr4 87551751 87551789 -114776558 + (TTTC)n Simple_repeat Simple_repeat 1 215 0 1093 104 0 22 chr4 87551789 87551971 -114776376 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 415 145 0 14 chr4 87552119 87552188 -114776159 + (TCCCC)n Simple_repeat Simple_repeat 1 68 0 1905 151 4 0 chr4 87552189 87552461 -114775886 - AluJb SINE Alu -39 273 1 375 273 82 21 chr4 87553294 87553488 -114774859 - L1ME LINE L1 -404 5717 5512 23 33 0 0 chr4 87553653 87553683 -114774664 + AT_rich Low_complexity Low_complexity 1 30 0 2543 75 0 0 chr4 87553684 87553991 -114774356 + AluY SINE Alu 1 307 -4 273 57 0 0 chr4 87554987 87555022 -114773325 + (GAA)n Simple_repeat Simple_repeat 1 35 0 297 296 10 0 chr4 87555451 87555549 -114772798 - MER117 DNA MER1_type -96 101 3 394 235 12 0 chr4 87555783 87555868 -114772479 + Charlie7 DNA MER1_type 6 91 -2521 2377 94 7 0 chr4 87555885 87556192 -114772155 + AluSc SINE Alu 1 309 0 2169 131 10 3 chr4 87556261 87556567 -114771780 + AluSx SINE Alu 5 312 0 1756 114 88 22 chr4 87556576 87556875 -114771472 + AluSx SINE Alu 1 317 0 370 258 168 19 chr4 87556920 87557129 -114771218 + Charlie7 DNA MER1_type 214 453 -2159 243 135 0 0 chr4 87557132 87557169 -114771178 + U2 snRNA snRNA 1 37 -151 588 86 0 125 chr4 87557326 87557381 -114770966 + L1MB8 LINE L1 6067 6099 -79 1827 155 55 0 chr4 87557381 87557671 -114770676 - AluSx SINE Alu -3 309 4 588 86 0 125 chr4 87557671 87557743 -114770604 + L1MB8 LINE L1 6099 6178 0 651 232 106 8 chr4 87557748 87557994 -114770353 + Charlie7 DNA MER1_type 1864 2133 -479 243 229 0 37 chr4 87558134 87558243 -114770104 + (TAA)n Simple_repeat Simple_repeat 2 106 0 29 70 0 0 chr4 87558286 87558343 -114770004 + AT_rich Low_complexity Low_complexity 1 57 0 232 189 178 0 chr4 87558352 87558442 -114769905 + Charlie7 DNA MER1_type 2476 2581 -31 1590 139 105 15 chr4 87558482 87558749 -114769598 - AluSx SINE Alu -13 299 9 963 254 35 9 chr4 87558808 87559036 -114769311 + MIR SINE MIR 1 234 -28 239 279 29 38 chr4 87559882 87560080 -114768267 - L1MC/D LINE L1 -303 5818 5729 2095 115 0 3 chr4 87560310 87560596 -114767751 - AluSg SINE Alu -25 285 1 261 369 100 0 chr4 87561437 87561567 -114766780 - MIR SINE MIR -88 174 32 988 217 41 32 chr4 87562210 87562431 -114765916 + MER58A DNA MER1_type 2 224 0 1974 135 21 3 chr4 87562681 87562969 -114765378 + AluSx SINE Alu 1 293 -19 192 241 138 23 chr4 87564568 87564655 -114763692 - MIR SINE MIR -53 209 113 972 176 74 29 chr4 87564665 87564958 -114763389 - MSTD LTR MaLR 0 396 60 754 80 9 0 chr4 87565356 87565468 -114762879 - L1MA8 LINE L1 -7 6284 6172 350 223 0 69 chr4 87565517 87565647 -114762700 - L1MC4 LINE L1 0 8042 7922 24 0 0 0 chr4 87565717 87565741 -114762606 + AT_rich Low_complexity Low_complexity 1 24 0 2289 99 0 0 chr4 87565743 87566036 -114762311 - AluSx SINE Alu -17 295 3 2055 133 0 10 chr4 87566038 87566339 -114762008 - AluSx SINE Alu -14 298 1 2845 258 84 8 chr4 87566385 87567453 -114760894 - L1MC4a LINE L1 -1249 6559 5410 23 33 0 0 chr4 87568189 87568219 -114760128 + AT_rich Low_complexity Low_complexity 1 30 0 1810 166 31 3 chr4 87568313 87568602 -114759745 + AluJo SINE Alu 1 297 -15 223 178 0 42 chr4 87569055 87569103 -114759244 - MIR SINE MIR -55 153 106 1600 170 3 39 chr4 87569214 87569520 -114758827 + AluJb SINE Alu 3 297 -15 42 48 0 0 chr4 87570195 87570258 -114758089 + AT_rich Low_complexity Low_complexity 1 63 0 239 377 105 0 chr4 87570568 87570682 -114757665 - L2 LINE L2 -13 3259 3134 1613 168 18 64 chr4 87571631 87571958 -114756389 - AluJo SINE Alu 0 312 1 286 235 49 0 chr4 87572013 87572094 -114756253 - MLT1J LTR MaLR -4 507 423 958 250 55 19 chr4 87572122 87572430 -114755917 - MLT1J LTR MaLR -162 349 31 1521 157 20 86 chr4 87572616 87572649 -114755698 - MLT1A2 LTR MaLR 0 374 340 1701 148 62 15 chr4 87572649 87572973 -114755374 - MER44D DNA MER2_type 0 609 1 1521 157 20 86 chr4 87572973 87573335 -114755012 - MLT1A2 LTR MaLR -34 340 5 1891 124 21 11 chr4 87573394 87573676 -114754671 - AluSx SINE Alu -27 285 1 1029 199 0 28 chr4 87573962 87574178 -114754169 + MER6B DNA MER2_type 1 210 0 1908 127 3 11 chr4 87574345 87574656 -114753691 + AluJb SINE Alu 1 309 0 2398 100 3 0 chr4 87576384 87576693 -114751654 + AluSp SINE Alu 1 310 -3 2326 88 3 0 chr4 87576939 87577246 -114751101 - AluSq SINE Alu 0 308 1 248 323 20 40 chr4 87577326 87577425 -114750922 - MIR SINE MIR -92 116 20 672 36 0 0 chr4 87580085 87580169 -114748178 - L1PA6 LINE L1 -4 6150 6067 2300 111 0 0 chr4 87580583 87580880 -114747467 - AluSx SINE Alu -15 297 1 5846 154 17 64 chr4 87581429 87581622 -114746725 - L1MA5 LINE L1 -2 6940 6740 2334 107 7 0 chr4 87581622 87581931 -114746416 + AluSx SINE Alu 1 311 -1 5846 154 17 64 chr4 87581931 87582814 -114745533 - L1MA5 LINE L1 -202 6740 5977 1658 163 54 31 chr4 87582814 87583108 -114745239 + AluJo SINE Alu 1 301 -11 5846 154 17 64 chr4 87583108 87583728 -114744619 - L1MA5 LINE L1 -965 5977 5330 6746 207 25 20 chr4 87583728 87585214 -114743133 - L1MA5 LINE L1 -2250 4538 3062 2190 116 7 0 chr4 87585214 87585506 -114742841 - AluSc SINE Alu -15 294 1 6746 207 25 20 chr4 87585506 87586461 -114741886 - L1MA5 LINE L1 -3726 3062 2114 1697 174 69 92 chr4 87586461 87586897 -114741450 + MSTB LTR MaLR 1 426 0 6746 207 25 20 chr4 87586897 87588653 -114739694 - L1MA5 LINE L1 -4674 2114 5 2219 114 0 10 chr4 87588661 87588960 -114739387 - AluSx SINE Alu -16 296 1 1046 218 32 5 chr4 87589199 87589415 -114738932 + MER58A DNA MER1_type 1 222 -2 293 320 49 16 chr4 87589416 87589538 -114738809 - L1MEd LINE L1 -5525 594 469 2422 73 6 13 chr4 87589716 87590031 -114738316 - AluSp SINE Alu 0 313 1 910 327 79 9 chr4 87592310 87592887 -114735460 + L2 LINE L2 2557 3169 -144 977 223 15 34 chr4 87592940 87593205 -114735142 - L1MC4 LINE L1 -430 7612 7353 696 126 22 46 chr4 87593205 87593361 -114734986 + MSTA LTR MaLR 1 198 -157 * 1286 158 8 26 chr4 87593354 87593588 -114734759 - MLT1B LTR MaLR -160 230 1 453 230 0 10 chr4 87593588 87593688 -114734659 - L1MC4 LINE L1 -685 7357 7259 906 132 0 0 chr4 87593688 87593817 -114734530 + THE1B LTR MaLR 1 129 -235 568 196 27 0 chr4 87593819 87593931 -114734416 - L1MC4 LINE L1 -1461 6581 6467 292 213 22 26 chr4 87594352 87594364 -114733983 - AluS SINE Alu -242 66 55 1661 165 0 11 chr4 87594364 87594630 -114733717 - AluJb SINE Alu -46 266 4 292 213 22 26 chr4 87594630 87594706 -114733641 - AluS SINE Alu -253 55 2 2420 132 5 18 chr4 87594826 87595206 -114733141 + THE1C LTR MaLR 1 375 0 10592 112 36 10 chr4 87595206 87596746 -114731601 + THE1C-int LTR MaLR 1 1580 0 2133 123 26 62 chr4 87596746 87596912 -114731435 + THE1C LTR MaLR 1 171 -204 1919 120 68 0 chr4 87596912 87597204 -114731143 - AluSq SINE Alu -1 312 1 2133 123 26 62 chr4 87597204 87597426 -114730921 + THE1C LTR MaLR 171 375 0 544 293 92 35 chr4 87597689 87597972 -114730375 + MLT1K LTR MaLR 204 502 -86 252 264 14 14 chr4 87598091 87598163 -114730184 + (TATG)n Simple_repeat Simple_repeat 3 74 0 1674 106 34 0 chr4 87598299 87598536 -114729811 - AluSg/x SINE Alu -2 310 66 22 35 0 0 chr4 87598662 87598691 -114729656 + AT_rich Low_complexity Low_complexity 1 29 0 237 269 51 13 chr4 87600883 87600961 -114727386 - MIR SINE MIR -90 172 92 1995 144 0 0 chr4 87601532 87601839 -114726508 + AluSx SINE Alu 1 307 0 725 326 99 8 chr4 87601847 87602212 -114726135 + MLT1J LTR MaLR 1 398 -113 227 312 32 0 chr4 87602263 87602356 -114725991 - L2 LINE L2 -228 3044 2949 23 33 0 0 chr4 87602356 87602386 -114725961 + AT_rich Low_complexity Low_complexity 1 30 0 204 310 23 0 chr4 87602414 87602501 -114725846 - MIR SINE MIR -56 206 118 1226 258 58 16 chr4 87602578 87603057 -114725290 + MLT1E LTR MaLR 1 591 -2 785 244 102 86 chr4 87603108 87603539 -114724808 + MLT1J2 LTR MaLR 3 440 -10 199 343 137 0 chr4 87603698 87603800 -114724547 - MIR SINE MIR -58 150 35 1352 146 10 0 chr4 87604945 87605144 -114723203 - AluJb SINE Alu -1 311 111 229 304 0 0 chr4 87605504 87605560 -114722787 + L2 LINE L2 3186 3241 -31 305 313 30 15 chr4 87605565 87605696 -114722651 + MIR SINE MIR 17 149 -113 373 111 0 14 chr4 87606624 87606696 -114721651 - Charlie4 DNA MER1_type -67 1894 1824 557 144 31 0 chr4 87606696 87606793 -114721554 + AluJo SINE Alu 36 135 -177 1165 137 0 126 chr4 87606793 87607048 -114721299 + AluJb SINE Alu 84 306 -6 4644 114 64 60 chr4 87607106 87607403 -114720944 - L1PA16 LINE L1 -1 6165 5871 1770 155 0 50 chr4 87607403 87607706 -114720641 - AluJb SINE Alu -24 288 1 4644 114 64 60 chr4 87607706 87608269 -114720078 - L1PA16 LINE L1 -295 5871 5302 609 130 30 0 chr4 87608286 87608386 -114719961 + AluJo SINE Alu 36 138 -174 741 245 136 32 chr4 87608405 87608744 -114719603 - Charlie4a DNA MER1_type -11 497 124 1573 155 62 14 chr4 87608776 87609067 -114719280 + AluSx SINE Alu 1 305 -7 632 62 0 0 chr4 87609067 87609147 -114719200 - HY3 scRNA scRNA -3 98 19 503 103 0 112 chr4 87609157 87609172 -114719175 - Charlie4a DNA MER1_type -1824 137 122 2073 89 48 7 chr4 87609172 87609464 -114718883 - AluSq SINE Alu -9 304 1 503 103 0 112 chr4 87609464 87609555 -114718792 - Charlie4a DNA MER1_type -1839 122 43 1355 138 103 135 chr4 87609555 87610013 -114718334 + LTR7 LTR ERV1 1 443 -7 371 232 145 22 chr4 87610240 87610378 -114717969 - MLT1J LTR MaLR -14 497 343 1879 149 0 13 chr4 87610655 87610956 -114717391 - AluJo SINE Alu -7 305 9 245 231 0 31 chr4 87611002 87611067 -114717280 + LTR67 LTR ERVL 495 557 0 2306 101 132 11 chr4 87611490 87611868 -114716479 + MSTA LTR MaLR 3 426 -2 333 246 60 70 chr4 87612025 87612224 -114716123 - L2 LINE L2 -1 3312 3116 340 235 0 0 chr4 87613120 87613188 -114715159 - MLT1K LTR MaLR 0 588 521 243 339 27 0 chr4 87613347 87613459 -114714888 - MLT1K LTR MaLR -348 240 126 180 344 0 16 chr4 87613945 87614009 -114714338 - L2 LINE L2 -9 3263 3201 2419 87 3 3 chr4 87614538 87614837 -114713510 + AluSp SINE Alu 1 299 -14 331 264 167 46 chr4 87614852 87615026 -114713321 + MIR SINE MIR 59 253 -9 976 149 0 0 chr4 87615695 87615836 -114712511 + AluJb SINE Alu 1 141 -171 25 0 0 0 chr4 87615853 87615878 -114712469 + AT_rich Low_complexity Low_complexity 1 25 0 617 10 0 61 chr4 87616102 87616200 -114712147 + (TTCC)n Simple_repeat Simple_repeat 2 93 0 2064 134 10 0 chr4 87616208 87616515 -114711832 - AluSg SINE Alu 0 310 1 593 274 200 0 chr4 87616523 87616698 -114711649 - LTR16C LTR ERVL -197 294 85 259 260 134 55 chr4 87616888 87616996 -114711351 + L2 LINE L2 3174 3295 -18 2115 105 0 48 chr4 87616996 87617309 -114711038 + AluSx SINE Alu 1 298 -14 259 260 134 55 chr4 87617309 87617327 -114711020 + L2 LINE L2 3295 3310 -3 303 277 0 24 chr4 87618315 87618398 -114709949 - L2 LINE L2 -8 3264 3184 409 306 86 27 chr4 87619035 87619257 -114709090 + MIR SINE MIR 20 254 -8 910 96 0 0 chr4 87620409 87620534 -114707813 + AluSg/x SINE Alu 183 307 -3 2135 97 57 0 chr4 87620534 87620834 -114707513 + MER57B LTR ERV1 115 431 -3 324 155 0 0 chr4 87621404 87621462 -114706885 - Alu SINE Alu -4 298 241 276 31 0 0 chr4 87621461 87621493 -114706854 + MER4A LTR ERV1 554 585 -79 * 204 40 0 0 chr4 87621510 87621535 -114706812 + (TA)n Simple_repeat Simple_repeat 2 26 0 312 91 23 0 chr4 87621555 87621599 -114706748 + AluS SINE Alu 21 65 -238 254 143 95 0 chr4 87621596 87621669 -114706678 + MLT1C LTR MaLR 46 101 -366 * 569 173 4 38 chr4 87621747 87621989 -114706358 + (TA)n Simple_repeat Simple_repeat 1 233 0 228 156 0 0 chr4 87622002 87622047 -114706300 + LTR66 LTR ERVL 395 439 -171 336 255 0 0 chr4 87622047 87622149 -114706198 + (TA)n Simple_repeat Simple_repeat 2 103 0 224 138 86 17 chr4 87622290 87622348 -114705999 - MIR SINE MIR -69 193 132 1274 201 112 55 chr4 87622361 87622799 -114705548 + MLT1C LTR MaLR 5 467 0 236 250 0 0 chr4 87622864 87622916 -114705431 + GA-rich Low_complexity Low_complexity 5 56 0 2277 74 3 10 chr4 87623701 87623999 -114704348 - AluSx SINE Alu -16 296 1 204 206 0 0 chr4 87625819 87625853 -114702494 + (CGTG)n Simple_repeat Simple_repeat 2 35 0 199 150 75 0 chr4 87626441 87626481 -114701866 - MIR SINE MIR -55 153 111 28 29 0 0 chr4 87626520 87626555 -114701792 + AT_rich Low_complexity Low_complexity 1 35 0 315 0 0 0 chr4 87626555 87626590 -114701757 + (TG)n Simple_repeat Simple_repeat 2 36 0 711 157 9 0 chr4 87626602 87626717 -114701630 - FLAM_C SINE Alu -26 117 2 572 256 95 41 chr4 87626752 87626994 -114701353 + MIR SINE MIR 8 262 0 396 246 103 8 chr4 87627906 87628032 -114700315 + MER117 DNA MER1_type 19 156 -41 2313 118 3 0 chr4 87628839 87629145 -114699202 + AluSx SINE Alu 1 307 -5 2161 131 0 13 chr4 87629640 87629953 -114698394 - AluSx SINE Alu -3 309 1 284 287 0 78 chr4 87629953 87630082 -114698265 - MIR SINE MIR -113 149 31 1530 160 55 51 chr4 87630202 87630495 -114697852 - AluJb SINE Alu -18 294 1 2231 118 14 77 chr4 87630644 87631060 -114697287 - MLT1B LTR MaLR 0 390 1 2174 125 0 3 chr4 87631679 87631991 -114696356 + AluSq SINE Alu 1 311 -2 1294 179 5 0 chr4 87631994 87632212 -114696135 + AluJb SINE Alu 13 231 -81 2070 120 17 3 chr4 87632599 87632900 -114695447 - AluSx SINE Alu -2 310 6 405 212 62 9 chr4 87633048 87633161 -114695186 - MIR SINE MIR -47 215 97 402 233 68 0 chr4 87634019 87634122 -114694225 - MER103 DNA DNA -9 157 48 1979 150 0 17 chr4 87634122 87634422 -114693925 + AluJb SINE Alu 1 295 -17 22 0 0 0 chr4 87634903 87634925 -114693422 + AT_rich Low_complexity Low_complexity 1 22 0 194 0 39 0 chr4 87634930 87634956 -114693391 + (TTAAA)n Simple_repeat Simple_repeat 1 27 0 2211 105 0 0 chr4 87634962 87635248 -114693099 - AluSx SINE Alu -26 286 1 2679 46 0 0 chr4 87636210 87636516 -114691831 - AluY SINE Alu -5 306 1 693 154 81 0 chr4 87636818 87636941 -114691406 - FLAM_C SINE Alu 0 133 1 482 219 106 0 chr4 87638027 87638150 -114690197 + FLAM_A SINE Alu 1 136 -6 237 65 0 0 chr4 87638406 87638437 -114689910 + (TG)n Simple_repeat Simple_repeat 2 32 0 24 53 0 0 chr4 87638470 87638508 -114689839 + AT_rich Low_complexity Low_complexity 1 38 0 1743 132 6 77 chr4 87638508 87638676 -114689671 - AluSx SINE Alu -23 289 111 240 35 0 0 chr4 87638676 87638705 -114689642 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2169 121 0 0 chr4 87638705 87638987 -114689360 - AluSx SINE Alu -30 282 1 1743 132 6 77 chr4 87638987 87639128 -114689219 - AluSx SINE Alu -199 113 1 719 138 0 0 chr4 87639188 87639297 -114689050 - AluJb SINE Alu -203 109 1 243 0 0 0 chr4 87639368 87639395 -114688952 + (ATG)n Simple_repeat Simple_repeat 3 29 0 281 218 75 15 chr4 87639561 87639694 -114688653 - L1MC5 LINE L1 -254 7707 7567 253 235 0 88 chr4 87639950 87640052 -114688295 + L1M4 LINE L1 5548 5640 -544 22 56 0 0 chr4 87640261 87640297 -114688050 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr4 87640443 87640472 -114687875 + AT_rich Low_complexity Low_complexity 1 29 0 2435 80 0 3 chr4 87640476 87640778 -114687569 + AluSc SINE Alu 1 301 -8 360 0 0 0 chr4 87640778 87640818 -114687529 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 950 166 27 21 chr4 87641125 87641312 -114687035 - MER20 DNA MER1_type -2 217 30 1914 162 3 40 chr4 87641703 87642079 -114686268 + MLT1A1 LTR MaLR 4 365 0 1671 125 86 0 chr4 87642585 87642841 -114685506 + AluJb SINE Alu 1 278 -34 1672 148 3 25 chr4 87643751 87644069 -114684278 - MER4D LTR ERV1 -19 884 574 551 210 25 0 chr4 87644074 87644193 -114684154 - MER4E LTR ERV1 -468 311 190 2074 109 3 7 chr4 87644193 87644476 -114683871 + AluSx SINE Alu 1 282 -30 303 162 18 51 chr4 87644502 87645176 -114683171 + (TA)n Simple_repeat Simple_repeat 1 651 0 221 222 0 70 chr4 87645353 87645538 -114682809 + (TA)n Simple_repeat Simple_repeat 2 173 0 207 0 0 0 chr4 87645540 87645563 -114682784 + (TC)n Simple_repeat Simple_repeat 2 24 0 529 124 0 22 chr4 87645569 87645668 -114682679 - MER4D LTR ERV1 -553 319 114 529 202 0 0 chr4 87646908 87647007 -114681340 + MER81 DNA DNA 16 114 0 646 187 24 84 chr4 87647316 87647482 -114680865 + AluJb SINE Alu 134 289 -23 1987 128 11 7 chr4 87647843 87648177 -114680170 - AluSx SINE Alu 0 335 1 494 325 117 4 chr4 87648346 87648577 -114679770 + MIR SINE MIR 2 258 -4 2011 113 3 7 chr4 87649459 87649750 -114678597 - AluSg SINE Alu -20 290 1 2307 87 0 10 chr4 87649823 87650133 -114678214 + AluY SINE Alu 1 307 -4 2375 55 10 3 chr4 87650362 87650669 -114677678 + AluY SINE Alu 1 309 -2 450 0 0 0 chr4 87650859 87650909 -114677438 + (A)n Simple_repeat Simple_repeat 1 50 0 486 279 21 14 chr4 87651016 87651156 -114677191 - MIR SINE MIR -77 185 45 264 292 0 0 chr4 87651452 87651517 -114676830 + MIR SINE MIR 88 152 -110 237 191 41 204 chr4 87653293 87653440 -114674907 + L2 LINE L2 3148 3270 -2 696 285 30 30 chr4 87654173 87654440 -114673907 - L2 LINE L2 0 3313 3047 485 294 56 90 chr4 87654428 87654730 -114673617 - L2 LINE L2 -404 2910 2621 * 1991 137 0 3 chr4 87654730 87655038 -114673309 + AluSx SINE Alu 1 307 0 485 294 56 90 chr4 87655038 87655111 -114673236 - L2 LINE L2 -693 2621 2547 186 304 93 46 chr4 87655138 87655332 -114673015 + L3b LINE CR1 1271 1473 -110 1209 174 9 0 chr4 87655453 87655672 -114672675 - L1MC1 LINE L1 -6 6327 6107 243 346 25 0 chr4 87656228 87656309 -114672038 + L3 LINE CR1 6 88 -1489 245 354 50 35 chr4 87656318 87656516 -114671831 + L3 LINE CR1 921 1121 -456 947 188 18 27 chr4 87657424 87657648 -114670699 - MER113 DNA MER1_type? -30 491 270 417 188 75 31 chr4 87657746 87657906 -114670441 - MER113 DNA MER1_type? -270 251 85 1539 127 15 36 chr4 87658127 87658471 -114669876 - MER61B LTR ERV1 0 425 1 2558 185 20 67 chr4 87658708 87659350 -114668997 + LTR9 LTR ERV1 1 612 0 225 0 0 0 chr4 87660073 87660098 -114668249 + (TTA)n Simple_repeat Simple_repeat 1 25 0 237 312 0 0 chr4 87660202 87660279 -114668068 + (TCCA)n Simple_repeat Simple_repeat 3 79 0 205 135 39 0 chr4 87660687 87660739 -114667608 + (TA)n Simple_repeat Simple_repeat 1 54 0 256 286 12 36 chr4 87660764 87660848 -114667499 - L2 LINE L2 -5 3267 3186 443 141 13 0 chr4 87660984 87661062 -114667285 + MER116 DNA Mariner 1 79 -1 207 0 0 0 chr4 87662802 87662825 -114665522 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 945 65 0 0 chr4 87662828 87662951 -114665396 - L1PA10 LINE L1 -20 6148 6026 352 298 25 140 chr4 87663467 87663746 -114664601 + L2 LINE L2 3026 3272 0 2195 105 0 20 chr4 87663808 87664104 -114664243 + AluSx SINE Alu 1 290 -22 1953 98 8 11 chr4 87664649 87664940 -114663407 + AluSx SINE Alu 21 310 0 1144 228 42 47 chr4 87664968 87665083 -114663264 + LTR37B LTR ERV1 6 120 -348 869 213 132 0 chr4 87665083 87665280 -114663067 - MER58A DNA MER1_type 0 224 2 1144 228 42 47 chr4 87665280 87665572 -114662775 + LTR37B LTR ERV1 120 411 -57 244 140 73 7 chr4 87665756 87665892 -114662455 + (TA)n Simple_repeat Simple_repeat 2 146 0 402 114 34 68 chr4 87665910 87666086 -114662261 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 240 120 56 48 chr4 87666097 87666222 -114662125 + (TTATA)n Simple_repeat Simple_repeat 4 129 0 22 0 0 0 chr4 87666223 87666245 -114662102 + AT_rich Low_complexity Low_complexity 1 22 0 2131 134 16 38 chr4 87666840 87667212 -114661135 - THE1B LTR MaLR 0 364 1 28 71 0 0 chr4 87667458 87667514 -114660833 + AT_rich Low_complexity Low_complexity 1 56 0 2188 112 10 0 chr4 87667624 87667920 -114660427 + AluSx SINE Alu 1 299 -13 24 0 0 0 chr4 87668047 87668071 -114660276 + AT_rich Low_complexity Low_complexity 1 24 0 809 236 0 10 chr4 87668866 87669061 -114659286 + MER115 DNA AcHobo 491 683 -10 386 267 0 40 chr4 87669257 87669407 -114658940 - L1ME LINE L1 -456 5665 5522 432 348 20 15 chr4 87670046 87670247 -114658100 + MIR3 SINE MIR 3 204 -4 572 182 108 118 chr4 87672269 87672322 -114656025 + MER20 DNA MER1_type 16 68 -151 2191 127 0 0 chr4 87672322 87672621 -114655726 + AluSx SINE Alu 1 299 -13 572 182 108 118 chr4 87672621 87672770 -114655577 + MER20 DNA MER1_type 68 216 -3 201 154 0 0 chr4 87673680 87673719 -114654628 + T-rich Low_complexity Low_complexity 1 39 0 1607 147 21 0 chr4 87673804 87674090 -114654257 - L1MB4 LINE L1 -6 6174 5883 225 380 13 0 chr4 87674093 87674172 -114654175 + L2 LINE L2 3192 3271 -1 21 0 0 0 chr4 87674225 87674246 -114654101 + AT_rich Low_complexity Low_complexity 1 21 0 275 369 0 19 chr4 87674549 87674652 -114653695 - MIR SINE MIR -74 134 34 1095 76 0 0 chr4 87675953 87676098 -114652249 - AluY SINE Alu -8 303 159 300 232 40 10 chr4 87676201 87676300 -114652047 - HAL1b LINE L1 -17 1331 1230 218 238 71 83 chr4 87676739 87676769 -114651578 - L2 LINE L2 0 3272 3243 3007 86 32 7 chr4 87676769 87677202 -114651145 + MLT2A1 LTR ERVL 1 444 0 218 238 71 83 chr4 87677202 87677255 -114651092 - L2 LINE L2 -29 3243 3190 321 237 68 34 chr4 87677681 87677799 -114650548 - MIR SINE MIR -6 256 135 441 328 73 20 chr4 87677834 87678038 -114650309 + MIR SINE MIR 48 262 0 184 167 28 0 chr4 87678067 87678103 -114650244 + MIR SINE MIR 73 109 -153 2224 116 0 0 chr4 87678103 87678397 -114649950 - AluSg SINE Alu -16 294 1 283 292 41 42 chr4 87678872 87679006 -114649341 - MIR SINE MIR -63 145 63 253 197 169 0 chr4 87679100 87679171 -114649176 - MIR SINE MIR -61 201 119 888 270 158 61 chr4 87679190 87679815 -114648532 - MER21B LTR ERV1 -149 714 29 960 189 20 20 chr4 87680146 87680347 -114648000 - L2 LINE L2 0 3313 3113 198 273 70 117 chr4 87680634 87680934 -114647413 + L2 LINE L2 3026 3311 -2 262 229 68 42 chr4 87681146 87681264 -114647083 - L1ME4a LINE L1 0 6121 6001 212 321 25 49 chr4 87681264 87681345 -114647002 - L2 LINE L2 -27 3286 3208 973 144 14 0 chr4 87681555 87681701 -114646646 + AluSg/x SINE Alu 147 294 -18 1969 111 7 0 chr4 87681760 87682031 -114646316 - AluSx SINE Alu -39 273 1 1698 252 52 35 chr4 87682267 87683029 -114645318 + L1M4 LINE L1 3657 4431 -1715 1400 165 44 85 chr4 87683176 87683492 -114644855 + AluJb SINE Alu 1 303 -9 1609 150 48 51 chr4 87683520 87683813 -114644534 - AluJo SINE Alu -18 294 3 1445 207 32 11 chr4 87683831 87684174 -114644173 - MLT2D LTR ERVL -8 406 62 239 225 50 25 chr4 87684177 87684257 -114644090 + HAL1b LINE L1 559 640 -708 460 256 51 58 chr4 87684303 87684596 -114643751 + L1MC5 LINE L1 7219 7509 -452 850 163 20 130 chr4 87684775 87685075 -114643272 + ORSL DNA AcHobo 9 275 0 252 0 0 0 chr4 87685181 87685209 -114643138 + (TG)n Simple_repeat Simple_repeat 2 29 0 258 260 0 29 chr4 87685915 87686019 -114642328 + L1MDa LINE L1 1277 1377 -5163 373 304 121 29 chr4 87686021 87686261 -114642086 + L1MDa LINE L1 1421 1682 -5039 595 293 43 0 chr4 87686267 87686515 -114641832 + L1M1 LINE L1 2728 3067 -4574 2262 125 0 0 chr4 87687224 87687527 -114640820 - AluSc SINE Alu -6 303 1 185 356 0 14 chr4 87688435 87688508 -114639839 + L2 LINE L2 3238 3309 -4 198 191 0 0 chr4 87689125 87689167 -114639180 + (TA)n Simple_repeat Simple_repeat 2 43 0 3021 209 73 38 chr4 87689497 87690134 -114638213 + L1MD2 LINE L1 5484 6160 -199 405 0 0 0 chr4 87690134 87690179 -114638168 + (CA)n Simple_repeat Simple_repeat 2 46 0 3021 209 73 38 chr4 87690179 87690386 -114637961 + L1MD2 LINE L1 6160 6358 -1 825 249 31 43 chr4 87690664 87690921 -114637426 + MIR SINE MIR 2 255 -7 180 262 82 0 chr4 87691249 87691310 -114637037 - L3 LINE CR1 -1216 361 296 545 226 14 34 chr4 87691512 87691658 -114636689 - L2 LINE L2 0 3313 3171 2044 142 0 3 chr4 87691943 87692239 -114636108 + AluJb SINE Alu 1 295 -17 2388 111 0 0 chr4 87692546 87692853 -114635494 + AluSq SINE Alu 1 307 -6 194 304 45 27 chr4 87693030 87693142 -114635205 - MIR3 SINE MIR -85 123 10 996 191 35 42 chr4 87693931 87694352 -114633995 + MLT1A1 LTR MaLR 1 361 -4 4893 101 43 0 chr4 87694383 87694812 -114633535 + L1PB1 LINE L1 5331 5740 -411 324 0 0 0 chr4 87694812 87694848 -114633499 + (TG)n Simple_repeat Simple_repeat 2 37 0 4893 101 43 0 chr4 87694848 87695204 -114633143 + L1PB1 LINE L1 5740 6150 -1 675 276 105 13 chr4 87695353 87695592 -114632755 + MIR SINE MIR 2 262 0 1732 108 0 4 chr4 87695641 87695900 -114632447 - L1PA14 LINE L1 -2 6159 5902 351 241 36 0 chr4 87696070 87696153 -114632194 - MIR SINE MIR -128 134 49 886 141 47 7 chr4 87696164 87696313 -114632034 + FRAM SINE Alu 10 164 -12 457 348 114 36 chr4 87696377 87696797 -114631550 - L2 LINE L2 0 3272 2820 257 292 5 27 chr4 87697034 87697136 -114631211 + MER5B DNA MER1_type 25 136 -53 378 0 0 0 chr4 87697170 87697212 -114631135 + (TG)n Simple_repeat Simple_repeat 2 43 0 360 361 8 8 chr4 87698375 87698497 -114629850 - MER5B DNA MER1_type -31 147 26 210 307 13 27 chr4 87698448 87698523 -114629824 + MER5A DNA MER1_type 116 189 0 * 2209 87 3 13 chr4 87699882 87700182 -114628165 + AluSc SINE Alu 1 297 -12 425 329 55 46 chr4 87700701 87701048 -114627299 + L2 LINE L2 2922 3271 -1 684 255 0 31 chr4 87701140 87701301 -114627046 + FAM SINE Alu 1 156 -19 25 31 0 0 chr4 87701381 87701413 -114626934 + AT_rich Low_complexity Low_complexity 1 32 0 1585 159 9 75 chr4 87701511 87701832 -114626515 + AluJb SINE Alu 1 300 -12 32 0 0 0 chr4 87702284 87702316 -114626031 + AT_rich Low_complexity Low_complexity 1 32 0 419 322 57 32 chr4 87702688 87703089 -114625258 + MLT1L LTR MaLR 205 615 0 324 182 0 0 chr4 87703612 87703678 -114624669 + L1ME4a LINE L1 5543 5608 -513 1493 229 89 41 chr4 87703912 87704440 -114623907 + MLT1F1 LTR MaLR 8 567 0 405 250 44 0 chr4 87704446 87704582 -114623765 + L1ME4a LINE L1 5712 5853 -268 366 140 0 0 chr4 87705116 87705173 -114623174 - MER5B DNA MER1_type -120 58 2 297 217 0 0 chr4 87705314 87705383 -114622964 + L1ME LINE L1 5547 5615 -506 641 295 39 26 chr4 87706935 87707169 -114621178 + MIR SINE MIR 24 260 -2 30 83 0 0 chr4 87708195 87708267 -114620080 + AT_rich Low_complexity Low_complexity 1 72 0 232 229 0 0 chr4 87709200 87709261 -114619086 + L2 LINE L2 3021 3081 -232 217 299 126 0 chr4 87709269 87709356 -114618991 + L2 LINE L2 3215 3312 -1 330 98 0 0 chr4 87711134 87711185 -114617162 + (TG)n Simple_repeat Simple_repeat 2 52 0 28 61 0 0 chr4 87711290 87711339 -114617008 + AT_rich Low_complexity Low_complexity 1 49 0 297 0 0 0 chr4 87711418 87711451 -114616896 + (TG)n Simple_repeat Simple_repeat 1 33 0 29 84 0 0 chr4 87712324 87712395 -114615952 + AT_rich Low_complexity Low_complexity 1 71 0 261 0 0 0 chr4 87712408 87712437 -114615910 + (CA)n Simple_repeat Simple_repeat 1 29 0 1140 246 108 27 chr4 87713168 87713493 -114614854 - MER77 LTR ERV1 -4 601 245 180 0 0 0 chr4 87713493 87713513 -114614834 + (ATTG)n Simple_repeat Simple_repeat 3 22 0 1140 246 108 27 chr4 87713513 87713591 -114614756 - MER77 LTR ERV1 -360 245 175 570 267 185 79 chr4 87713967 87714485 -114613862 - MLT1G1 LTR MaLR 0 590 40 1360 184 101 6 chr4 87715274 87715632 -114612715 - Charlie5 DNA MER1_type 0 2624 2233 28 61 0 0 chr4 87715632 87715681 -114612666 + AT_rich Low_complexity Low_complexity 1 49 0 1397 206 84 30 chr4 87717564 87717933 -114610414 - MLT1B LTR MaLR -1 389 1 211 275 0 0 chr4 87717950 87717990 -114610357 - MIR3 SINE MIR -52 156 117 517 265 59 7 chr4 87719079 87719215 -114609132 + MIR3 SINE MIR 30 172 -36 296 355 0 11 chr4 87719302 87719446 -114608901 - MIR SINE MIR -62 146 8 1705 57 5 5 chr4 87719629 87719839 -114608508 - AluY SINE Alu -101 210 1 33 0 0 0 chr4 87719839 87719872 -114608475 + AT_rich Low_complexity Low_complexity 1 33 0 2186 106 3 0 chr4 87720038 87720331 -114608016 - AluSx SINE Alu -18 294 1 1982 118 14 4 chr4 87720403 87720724 -114607623 - AluSq SINE Alu 0 324 1 368 197 219 0 chr4 87720727 87720864 -114607483 - L1MB4 LINE L1 -45 6135 5969 2198 173 26 5 chr4 87720983 87721400 -114606947 - MSTB LTR MaLR 0 426 1 1505 167 0 11 chr4 87722793 87723056 -114605291 + MER47B DNA MER2_type 157 416 -2 620 203 0 0 chr4 87723058 87723196 -114605151 + L1MD3 LINE L1 7834 7971 -24 328 336 9 9 chr4 87723215 87723331 -114605016 + L2 LINE L2 3188 3303 -10 269 284 53 21 chr4 87723361 87723699 -114604648 - L1M4 LINE L1 -2989 3157 2809 266 268 14 29 chr4 87723721 87723859 -114604488 - L1M4 LINE L1 -3825 2321 2186 21 36 0 0 chr4 87723882 87723910 -114604437 + AT_rich Low_complexity Low_complexity 1 28 0 650 241 0 0 chr4 87724383 87724541 -114603806 + MLT1A2 LTR MaLR 1 158 -216 2164 110 12 0 chr4 87724543 87724879 -114603468 - L1P LINE L1 -2199 3947 3608 2914 77 3 3 chr4 87724882 87725272 -114603075 + L1PA8 LINE L1 5780 6169 -3 297 192 0 0 chr4 87725312 87725364 -114602983 + MLT1A2 LTR MaLR 314 365 0 22 0 0 0 chr4 87726355 87726377 -114601970 + AT_rich Low_complexity Low_complexity 1 22 0 312 263 62 0 chr4 87726899 87726979 -114601368 - MIR3 SINE MIR 0 208 124 360 342 40 7 chr4 87727206 87727355 -114600992 - MER5A DNA MER1_type -1 188 35 415 328 40 11 chr4 87727362 87727536 -114600811 + MIR SINE MIR 38 216 -46 2053 77 18 39 chr4 87727546 87727831 -114600516 + AluSg SINE Alu 21 299 -11 576 229 8 0 chr4 87729577 87729695 -114598652 - MER20 DNA MER1_type -100 119 1 297 353 36 14 chr4 87730221 87730360 -114597987 - MIR SINE MIR -76 186 45 30 27 0 0 chr4 87731369 87731406 -114596941 + AT_rich Low_complexity Low_complexity 1 37 0 305 350 72 6 chr4 87731871 87732051 -114596296 + MIR SINE MIR 30 221 -41 196 385 48 0 chr4 87732139 87732222 -114596125 + L2 LINE L2 3186 3272 0 21 0 0 0 chr4 87733300 87733321 -114595026 + AT_rich Low_complexity Low_complexity 1 21 0 605 247 70 6 chr4 87734808 87734966 -114593381 - MER5B DNA MER1_type -1 177 10 2330 67 0 20 chr4 87736267 87736566 -114591781 + AluY SINE Alu 1 293 -18 389 250 33 17 chr4 87736575 87736695 -114591652 - MIR SINE MIR -1 261 140 1773 190 58 23 chr4 87736701 87737095 -114591252 - MLT1C LTR MaLR 0 467 60 185 132 26 0 chr4 87737130 87737168 -114591179 + GA-rich Low_complexity Low_complexity 1 39 0 397 326 28 33 chr4 87737728 87737909 -114590438 + MIR SINE MIR 13 192 -70 712 320 93 13 chr4 87737919 87738297 -114590050 - MLT1K LTR MaLR 0 588 181 835 266 56 32 chr4 87738747 87738958 -114589389 - MIR SINE MIR 0 262 42 2365 46 0 3 chr4 87738958 87739269 -114589078 + AluY SINE Alu 1 310 0 835 266 56 32 chr4 87739269 87739308 -114589039 - MIR SINE MIR -220 42 5 250 289 137 24 chr4 87739317 87739653 -114588694 - L1ME4a LINE L1 -44 6077 5704 357 340 19 31 chr4 87739777 87739936 -114588411 + MIR SINE MIR 25 181 -81 376 249 89 99 chr4 87740013 87740407 -114587940 - L1ME4a LINE L1 -34 6087 5698 769 296 68 0 chr4 87740712 87740918 -114587429 + MIR SINE MIR 12 231 -31 946 201 94 39 chr4 87740930 87741164 -114587183 - MIR SINE MIR -10 252 6 246 207 0 126 chr4 87741244 87741355 -114586992 - L1ME4a LINE L1 -449 5672 5576 272 345 28 21 chr4 87741464 87741606 -114586741 - L1ME4a LINE L1 -549 5572 5430 234 210 81 0 chr4 87741734 87741796 -114586551 + MIR SINE MIR 156 222 -40 508 110 0 0 chr4 87741803 87741876 -114586471 + Alu SINE Alu 224 296 -14 1769 115 31 3 chr4 87741887 87742173 -114586174 + L1MA5A LINE L1 6000 6293 -4 724 148 0 16 chr4 87742185 87742313 -114586034 + L1PB1 LINE L1 6026 6151 0 22 35 0 0 chr4 87742745 87742774 -114585573 + AT_rich Low_complexity Low_complexity 1 29 0 234 213 40 13 chr4 87742790 87742865 -114585482 + L1M4 LINE L1 1146 1222 -5320 932 203 28 6 chr4 87742980 87743162 -114585185 + Tigger5 DNA MER2_type 7 192 -2131 583 308 118 9 chr4 87744018 87744239 -114584108 - MIR SINE MIR -11 251 7 23 0 0 0 chr4 87744526 87744549 -114583798 + AT_rich Low_complexity Low_complexity 1 23 0 285 309 24 0 chr4 87746828 87746912 -114581435 + L2 LINE L2 3186 3271 -1 195 237 0 0 chr4 87747004 87747042 -114581305 - MIR3 SINE MIR -51 157 120 385 328 187 38 chr4 87747058 87747588 -114580759 - L3 LINE CR1 -79 1498 890 209 360 11 0 chr4 87747810 87747899 -114580448 - L3 LINE CR1 -1075 502 413 1959 124 4 0 chr4 87747951 87748226 -114580121 + AluSx SINE Alu 24 299 -13 310 344 45 57 chr4 87748465 87748622 -114579725 - L3 LINE CR1 -1205 372 218 320 345 9 18 chr4 87748627 87748737 -114579610 - MER5B DNA MER1_type -7 171 63 298 361 127 50 chr4 87749683 87749982 -114578365 + L2 LINE L2 2949 3270 -2 369 0 0 0 chr4 87750171 87750212 -114578135 + (TG)n Simple_repeat Simple_repeat 2 42 0 222 269 67 59 chr4 87750908 87751027 -114577320 + L2 LINE L2 3152 3271 -1 189 0 0 0 chr4 87751152 87751173 -114577174 + (CAGTA)n Simple_repeat Simple_repeat 4 24 0 1690 211 25 8 chr4 87751173 87751538 -114576809 - MLT1A2 LTR MaLR -3 371 1 484 89 0 22 chr4 87753346 87753436 -114574911 + (GA)n Simple_repeat Simple_repeat 2 89 0 352 280 133 45 chr4 87753693 87753924 -114574423 - LTR16C LTR ERVL -17 474 216 814 195 45 68 chr4 87753924 87754145 -114574202 + MER20 DNA MER1_type 4 219 0 352 280 133 45 chr4 87754145 87754177 -114574170 - LTR16C LTR ERVL -275 216 188 204 40 0 0 chr4 87755262 87755287 -114573060 + (TG)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chr4 87755349 87755372 -114572975 + (CA)n Simple_repeat Simple_repeat 2 24 0 2222 103 3 0 chr4 87755377 87755679 -114572668 - AluSx SINE Alu -9 303 1 275 256 145 29 chr4 87755950 87756157 -114572190 + L1ME LINE L1 5638 5868 -253 259 270 51 20 chr4 87756175 87756319 -114572028 + L1ME4a LINE L1 5816 5965 -156 655 246 128 24 chr4 87756752 87756963 -114571384 - MIR SINE MIR 0 262 30 1300 189 25 116 chr4 87758023 87758390 -114569957 + MLT1A2 LTR MaLR 3 334 -40 1676 173 11 18 chr4 87758390 87758701 -114569646 - AluJb SINE Alu 0 309 1 1300 189 25 116 chr4 87758701 87758729 -114569618 + MLT1A2 LTR MaLR 334 363 -11 2374 164 20 5 chr4 87759044 87759482 -114568865 - L1PA16 LINE L1 -3 6163 5719 633 332 117 29 chr4 87759600 87760302 -114568045 + L1M4 LINE L1 2983 3746 -2400 834 317 101 34 chr4 87760320 87760941 -114567406 + L1MA9 LINE L1 3805 4467 -1679 2348 220 161 11 chr4 87760954 87761976 -114566371 + L1M4c LINE L1 10 1157 -4984 554 181 7 83 chr4 87761983 87762127 -114566220 + L1M4c LINE L1 1244 1376 -4836 * 4307 158 63 4 chr4 87762123 87762558 -114565789 + L1MA9 LINE L1 4568 4976 -1336 2107 120 7 3 chr4 87762558 87762859 -114565488 + AluSq SINE Alu 1 302 -11 4307 158 63 4 chr4 87762859 87763874 -114564473 + L1MA9 LINE L1 4976 6098 -214 3109 244 71 16 chr4 87763874 87764616 -114563731 + L1PA2 LINE L1 5594 6312 0 30 0 0 0 chr4 87764681 87764711 -114563636 + AT_rich Low_complexity Low_complexity 1 30 0 854 184 108 9 chr4 87765517 87765729 -114562618 - L1MB1 LINE L1 0 6168 5936 381 362 71 12 chr4 87766055 87766475 -114561872 + L1MC/D LINE L1 5319 5763 -2045 304 222 22 22 chr4 87766659 87766749 -114561598 + L1MCa LINE L1 2006 2095 -4331 391 351 26 11 chr4 87766961 87767152 -114561195 - MLT1L LTR MaLR -72 543 350 295 202 155 39 chr4 87767273 87767402 -114560945 - MLT1L LTR MaLR -471 144 1 665 314 21 34 chr4 87769212 87769451 -114558896 - MIR SINE MIR -25 237 2 255 222 16 0 chr4 87769537 87769600 -114558747 - LTR16A LTR ERVL -5 445 382 261 318 98 23 chr4 87769643 87769775 -114558572 - LTR16A LTR ERVL -161 289 148 229 234 0 21 chr4 87769828 87769875 -114558472 - LTR16A LTR ERVL -402 48 3 25 51 0 0 chr4 87770331 87770370 -114557977 + AT_rich Low_complexity Low_complexity 1 39 0 1779 181 22 38 chr4 87770519 87770890 -114557457 + MLT1A1 LTR MaLR 1 365 0 250 232 0 0 chr4 87771462 87771518 -114556829 + MIR SINE MIR 205 260 -2 592 305 80 14 chr4 87771521 87771734 -114556613 - MIR SINE MIR -34 228 2 2179 160 32 34 chr4 87771896 87772366 -114555981 - L1MA9 LINE L1 0 6312 5844 1425 253 131 19 chr4 87772383 87772813 -114555534 - L1M1 LINE L1 -3906 3261 2881 2245 102 0 7 chr4 87772813 87773106 -114555241 + AluSg SINE Alu 1 291 -19 1425 253 131 19 chr4 87773106 87773431 -114554916 - L1M1 LINE L1 -4286 2881 2421 756 180 7 14 chr4 87773437 87773584 -114554763 - L1M1 LINE L1 -6890 201 1 308 245 163 0 chr4 87773590 87773688 -114554659 + MIR SINE MIR 128 241 -21 23 54 0 0 chr4 87774286 87774323 -114554024 + AT_rich Low_complexity Low_complexity 1 37 0 22 70 0 0 chr4 87774607 87774650 -114553697 + AT_rich Low_complexity Low_complexity 1 43 0 207 220 240 20 chr4 87774867 87774967 -114553380 - MIR SINE MIR -16 246 125 222 196 109 0 chr4 87776533 87776579 -114551768 - L2 LINE L2 0 3313 3263 203 61 30 0 chr4 87777015 87777048 -114551299 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 1928 49 4 4 chr4 87777050 87777294 -114551053 - L1PA7 LINE L1 -26 6128 5885 * 4831 65 23 0 chr4 87777293 87778306 -114550041 + L1PA7 LINE L1 4854 5880 -274 659 275 48 77 chr4 87778503 87778917 -114549430 - MLT1L LTR MaLR -13 602 201 236 247 135 11 chr4 87779958 87780047 -114548300 + MIR SINE MIR 137 236 -26 303 273 75 56 chr4 87780070 87780231 -114548116 - L2 LINE L2 -181 3091 2928 705 278 24 35 chr4 87780956 87781211 -114547136 + MIR SINE MIR 2 253 -9 248 293 110 73 chr4 87781247 87781475 -114546872 - L2 LINE L2 -865 2449 2204 1098 217 14 0 chr4 87781475 87781696 -114546651 - MER58A DNA MER1_type 0 224 1 248 293 110 73 chr4 87781696 87781795 -114546552 - L2 LINE L2 -1110 2204 2110 292 271 69 42 chr4 87782536 87782680 -114545667 + L1ME3A LINE L1 5999 6146 -24 180 77 0 0 chr4 87783299 87783325 -114545022 + (TGGA)n Simple_repeat Simple_repeat 4 29 0 450 0 0 0 chr4 87783574 87783624 -114544723 + (TG)n Simple_repeat Simple_repeat 2 51 0 343 316 94 8 chr4 87784941 87785058 -114543289 + MIR3 SINE MIR 40 166 -42 228 379 8 16 chr4 87785611 87785735 -114542612 - MIR SINE MIR -108 154 32 25 0 0 0 chr4 87785790 87785815 -114542532 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr4 87786019 87786047 -114542300 + AT_rich Low_complexity Low_complexity 1 28 0 213 284 136 0 chr4 87786077 87786165 -114542182 + L3b LINE CR1 1272 1371 -212 272 273 65 32 chr4 87786185 87786339 -114542008 - L1ME4a LINE L1 -6 6115 5957 489 281 111 43 chr4 87786358 87786870 -114541477 - L1ME4a LINE L1 -210 5911 5365 206 264 110 44 chr4 87787141 87787232 -114541115 - MIR SINE MIR -56 206 110 1213 40 0 7 chr4 87787955 87788105 -114540242 + L1PA6 LINE L1 5998 6146 -8 23 0 0 0 chr4 87788106 87788129 -114540218 + AT_rich Low_complexity Low_complexity 1 23 0 273 293 128 8 chr4 87788144 87788277 -114540070 + MIR SINE MIR 96 244 -18 1574 170 60 81 chr4 87788393 87788775 -114539572 + MLT1A2 LTR MaLR 1 374 0 270 239 64 83 chr4 87789523 87789632 -114538715 - LTR33A LTR ERVL -357 166 60 207 406 0 0 chr4 87789756 87789862 -114538485 - L2 LINE L2 -1003 2311 2206 329 264 0 0 chr4 87790122 87790194 -114538153 + MLT1L LTR MaLR 140 211 -404 2490 64 0 0 chr4 87790194 87790505 -114537842 + AluY SINE Alu 1 311 0 231 304 25 13 chr4 87790515 87790594 -114537753 + MLT1L LTR MaLR 196 275 -340 187 197 0 30 chr4 87792259 87792325 -114536022 + GA-rich Low_complexity Low_complexity 2 65 0 2501 234 43 42 chr4 87793080 87793870 -114534477 + L1MA10 LINE L1 2 790 -5421 297 0 0 0 chr4 87793870 87793903 -114534444 + (CA)n Simple_repeat Simple_repeat 2 34 0 2501 234 43 42 chr4 87793903 87794751 -114533596 + L1MA10 LINE L1 790 2058 -4153 4809 190 28 3 chr4 87794752 87795422 -114532925 + L1MA10 LINE L1 4322 5027 -1183 180 0 0 0 chr4 87795422 87795442 -114532905 + (GAAAA)n Simple_repeat Simple_repeat 5 24 0 4809 190 28 3 chr4 87795442 87795775 -114532572 + L1MA10 LINE L1 5027 5350 -860 4249 183 14 32 chr4 87795796 87796729 -114531618 + L1MA10 LINE L1 5482 6397 -1 26 0 0 0 chr4 87797736 87797762 -114530585 + AT_rich Low_complexity Low_complexity 1 26 0 423 0 0 0 chr4 87799214 87799261 -114529086 + (TG)n Simple_repeat Simple_repeat 2 48 0 571 278 140 53 chr4 87799903 87800259 -114528088 + L2 LINE L2 2927 3313 0 200 256 116 23 chr4 87800644 87800730 -114527617 - L2 LINE L2 0 3272 3179 2425 82 3 0 chr4 87801147 87801453 -114526894 + AluY SINE Alu 3 309 -2 265 296 0 0 chr4 87801847 87801918 -114526429 + HAL1 LINE L1 1498 1568 -939 188 228 0 13 chr4 87802268 87802347 -114526000 + (CATA)n Simple_repeat Simple_repeat 2 79 0 1406 172 29 54 chr4 87802430 87802744 -114525603 - AluJo SINE Alu -6 306 1 941 259 78 3 chr4 87803238 87803520 -114524827 + MLT1H LTR MaLR 231 533 -16 207 210 25 12 chr4 87803528 87803609 -114524738 + (TA)n Simple_repeat Simple_repeat 1 82 0 239 94 0 0 chr4 87805857 87805889 -114522458 - MLT1K LTR MaLR -8 580 549 408 256 80 24 chr4 87805902 87806027 -114522320 - MLT1K LTR MaLR -290 298 167 320 349 40 40 chr4 87806100 87806249 -114522098 + L2 LINE L2 3124 3272 0 235 266 0 16 chr4 87806819 87806883 -114521464 + (TG)n Simple_repeat Simple_repeat 2 64 0 703 256 68 43 chr4 87806905 87807304 -114521043 - MLT1J LTR MaLR -44 467 6 186 43 0 0 chr4 87807314 87807337 -114521010 + (TTG)n Simple_repeat Simple_repeat 2 24 0 325 149 0 0 chr4 87807428 87807495 -114520852 - MLT2B1 LTR ERVL 0 520 454 207 146 0 0 chr4 87807495 87807536 -114520811 + (GA)n Simple_repeat Simple_repeat 1 41 0 2317 172 77 7 chr4 87807536 87807966 -114520381 - MLT2B3 LTR ERVL -20 534 75 973 186 68 14 chr4 87808084 87808150 -114520197 - Ricksha DNA DNA -838 416 339 6182 150 63 60 chr4 87808150 87809373 -114518974 - ERVL-B3 LTR ERVL -1 5763 4537 21 0 0 0 chr4 87809821 87809842 -114518505 + AT_rich Low_complexity Low_complexity 1 21 0 1308 152 167 15 chr4 87809861 87810124 -114518223 - AluJb SINE Alu -9 303 1 1674 117 48 4 chr4 87810151 87810400 -114517947 - AluSq SINE Alu -53 260 1 408 321 56 10 chr4 87811396 87811592 -114516755 + MIR SINE MIR 24 228 -34 297 370 117 38 chr4 87811787 87812130 -114516217 - L2 LINE L2 -8 3264 2895 2300 150 2 47 chr4 87812130 87812531 -114515816 - MLT1B LTR MaLR -6 384 2 2067 214 31 18 chr4 87812538 87812995 -114515352 - MLT1B-int LTR MaLR -6 1365 903 967 179 22 6 chr4 87813008 87813187 -114515160 - MLT1B LTR MaLR -208 182 1 660 187 45 22 chr4 87813273 87813407 -114514940 - MIR SINE MIR -17 245 109 352 92 69 23 chr4 87813586 87813673 -114514674 + CT-rich Low_complexity Low_complexity 4 94 0 213 239 254 0 chr4 87814055 87814122 -114514225 - MIR SINE MIR -71 191 108 540 252 8 0 chr4 87814221 87814352 -114513995 - L1MA10 LINE L1 -3 6331 6200 8062 217 65 4 chr4 87814372 87817239 -114511108 - L1ME1 LINE L1 -254 5912 2791 5900 117 21 2 chr4 87817233 87818347 -114510000 + L1MA2 LINE L1 5014 6148 -156 * 345 136 85 0 chr4 87818347 87818406 -114509941 + AluJ/FRAM SINE Alu 223 286 -16 1028 146 0 0 chr4 87818410 87818575 -114509772 + L1MA2 LINE L1 6138 6302 -2 719 222 5 53 chr4 87818575 87818782 -114509565 - L1MEc LINE L1 -2201 4014 3818 399 148 16 0 chr4 87818793 87818854 -114509493 - FAM SINE Alu -17 158 97 2080 219 12 54 chr4 87818855 87819452 -114508895 - L1M4 LINE L1 -3143 3003 2432 628 248 31 5 chr4 87819462 87819647 -114508700 + L1MEc LINE L1 1936 2073 -4142 440 228 0 0 chr4 87819678 87819770 -114508577 - L1MEc LINE L1 -3429 2786 2695 417 20 0 0 chr4 87819799 87819849 -114508498 + (TATAG)n Simple_repeat Simple_repeat 3 52 0 2074 265 68 19 chr4 87819885 87820664 -114507683 - L1MEc LINE L1 -3873 2523 1697 185 56 0 56 chr4 87820664 87820700 -114507647 + (GTTTG)n Simple_repeat Simple_repeat 4 37 0 2074 265 68 19 chr4 87820700 87820778 -114507569 - L1MEc LINE L1 -4699 1697 1624 877 174 14 64 chr4 87820780 87821058 -114507289 + Tigger6a DNA MER2_type 1 357 -726 1304 150 0 0 chr4 87821061 87821254 -114507093 + AluSg/x SINE Alu 108 300 -12 30 0 0 0 chr4 87821275 87821305 -114507042 + AT_rich Low_complexity Low_complexity 1 30 0 2454 199 55 7 chr4 87821305 87821868 -114506479 + Tigger6a DNA MER2_type 385 974 -109 1694 186 4 4 chr4 87821869 87822149 -114506198 + AluJb SINE Alu 3 282 -30 472 198 79 10 chr4 87822149 87822250 -114506097 - L1MEc LINE L1 -6253 143 36 1133 186 68 0 chr4 87822920 87823140 -114505207 + L1MB3 LINE L1 5946 6180 -3 201 121 0 0 chr4 87823336 87823369 -114504978 + (TGG)n Simple_repeat Simple_repeat 3 35 0 197 266 7 22 chr4 87824157 87824192 -114504155 + GA-rich Low_complexity Low_complexity 3 37 -102 2463 66 3 0 chr4 87824192 87824494 -114503853 + AluSg SINE Alu 1 303 -7 197 266 7 22 chr4 87824494 87824597 -114503750 + GA-rich Low_complexity Low_complexity 37 139 0 351 264 116 16 chr4 87824758 87824887 -114503460 + MIR SINE MIR 48 189 -73 21 0 0 0 chr4 87825136 87825157 -114503190 + AT_rich Low_complexity Low_complexity 1 21 0 3729 149 62 17 chr4 87825452 87826116 -114502231 - MER39 LTR ERV1 -13 694 1 2546 139 45 16 chr4 87826116 87826562 -114501785 - MER34C LTR ERV1 -126 459 1 2225 107 0 0 chr4 87826610 87826900 -114501447 + AluSg SINE Alu 1 290 -20 43 35 0 0 chr4 87827219 87827276 -114501071 + AT_rich Low_complexity Low_complexity 1 57 0 326 347 16 0 chr4 87827414 87827538 -114500809 - LTR33 LTR ERVL -99 422 297 258 193 70 0 chr4 87827574 87827631 -114500716 + MER113 DNA MER1_type? 334 394 -127 531 284 171 0 chr4 87827665 87827876 -114500471 - MIR SINE MIR -2 260 14 570 100 0 0 chr4 87828474 87828554 -114499793 + MADE1 DNA Mariner 1 80 0 3087 153 17 67 chr4 87828563 87829029 -114499318 - MLT2B3 LTR ERVL 0 554 121 6067 77 19 1 chr4 87829029 87830630 -114497717 - L1PA14 LINE L1 0 6161 4505 3087 153 17 67 chr4 87830630 87830746 -114497601 - MLT2B3 LTR ERVL -433 121 1 1401 255 58 15 chr4 87830760 87831172 -114497175 - L1ME3A LINE L1 0 6170 5741 761 257 59 23 chr4 87831199 87831541 -114496806 + L1ME LINE L1 5254 5611 -551 183 315 146 34 chr4 87831655 87831744 -114496603 + L3 LINE CR1 983 1081 -496 216 301 0 41 chr4 87831881 87831954 -114496393 - L2 LINE L2 -23 3249 3180 1804 172 90 158 chr4 87832056 87832469 -114495878 + LTR8A LTR ERV1 1 338 -389 1583 174 0 42 chr4 87832469 87832779 -114495568 + AluJb SINE Alu 1 297 -15 1804 172 90 158 chr4 87832779 87833145 -114495202 + LTR8A LTR ERV1 338 727 0 421 306 158 22 chr4 87833159 87833437 -114494910 + L2 LINE L2 2215 2530 -784 420 236 22 0 chr4 87834334 87834423 -114493924 + L3 LINE CR1 1476 1566 -11 907 154 6 6 chr4 87834955 87835130 -114493217 + GA-rich Low_complexity Low_complexity 2 176 0 273 307 102 16 chr4 87836907 87837034 -114491313 - L2 LINE L2 -33 3239 3102 320 241 30 0 chr4 87837868 87838001 -114490346 + (TA)n Simple_repeat Simple_repeat 1 137 0 1710 171 14 11 chr4 87838007 87838293 -114490054 + AluJb SINE Alu 1 287 -25 574 305 133 25 chr4 87839166 87839573 -114488774 + L3 LINE CR1 409 859 -718 25 31 0 0 chr4 87839683 87839715 -114488632 + AT_rich Low_complexity Low_complexity 1 32 0 389 303 203 34 chr4 87839715 87839817 -114488530 + L1MB2 LINE L1 4135 4218 -1928 2111 126 3 0 chr4 87839817 87840110 -114488237 + AluSx SINE Alu 1 294 -18 389 303 203 34 chr4 87840110 87840845 -114487502 + L1MB2 LINE L1 4218 5156 -990 2047 131 3 3 chr4 87841189 87841480 -114486867 + AluSx SINE Alu 1 291 -21 641 286 6 0 chr4 87841538 87841720 -114486627 + L1MB2 LINE L1 5488 5670 -451 1868 129 40 65 chr4 87841877 87842248 -114486099 + MLT1B LTR MaLR 29 390 0 2455 131 50 2 chr4 87842296 87842715 -114485632 - Tigger2 DNA MER2_type 0 2718 2280 347 217 0 0 chr4 87842713 87842782 -114485565 - Tigger2 DNA MER2_type -2649 69 1 * 447 258 26 13 chr4 87842818 87842973 -114485374 + L1ME4a LINE L1 5963 6119 -2 1725 185 20 0 chr4 87842983 87843281 -114485066 + AluJb SINE Alu 1 304 -8 1431 150 105 0 chr4 87843368 87843654 -114484693 + L1MB2 LINE L1 5854 6169 -2 195 216 59 0 chr4 87843669 87843720 -114484627 + L3 LINE CR1 902 955 -622 21 36 0 0 chr4 87843870 87843898 -114484449 + AT_rich Low_complexity Low_complexity 1 28 0 267 306 275 5 chr4 87844005 87844198 -114484149 + MIR SINE MIR 18 262 0 331 303 284 4 chr4 87844253 87844507 -114483840 + L3 LINE CR1 1083 1407 -170 1689 189 85 47 chr4 87844552 87845045 -114483302 - MLT2B1 LTR ERVL -8 512 1 21 36 0 0 chr4 87845289 87845317 -114483030 + AT_rich Low_complexity Low_complexity 1 28 0 462 65 0 0 chr4 87845429 87845491 -114482856 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 747 161 130 71 chr4 87845610 87845864 -114482483 - LTR37B LTR ERV1 -2 466 198 319 199 164 41 chr4 87845932 87846103 -114482244 - LTR37B LTR ERV1 -270 198 7 221 226 0 19 chr4 87846637 87846690 -114481657 + L2 LINE L2 3262 3313 0 419 258 140 17 chr4 87846821 87846992 -114481355 - MIR3 SINE MIR -13 195 6 21 0 0 0 chr4 87848011 87848032 -114480315 + AT_rich Low_complexity Low_complexity 1 21 0 320 269 76 53 chr4 87848116 87848287 -114480060 + L1M4 LINE L1 2322 2496 -3650 24 0 0 0 chr4 87848678 87848702 -114479645 + AT_rich Low_complexity Low_complexity 1 24 0 920 176 16 103 chr4 87848735 87849008 -114479339 + MLT1E1 LTR MaLR 1 262 -392 393 252 119 14 chr4 87849146 87849289 -114479058 - MLT2E LTR ERVL 0 628 471 1758 178 27 0 chr4 87849290 87849583 -114478764 + AluSx SINE Alu 1 301 -11 779 311 47 22 chr4 87849642 87850136 -114478211 - MLT2F LTR ERVL -111 552 6 25 0 0 0 chr4 87851218 87851243 -114477104 + AT_rich Low_complexity Low_complexity 1 25 0 216 171 0 0 chr4 87851295 87851330 -114477017 + (CA)n Simple_repeat Simple_repeat 1 35 0 270 0 0 0 chr4 87852188 87852219 -114476128 + (TG)n Simple_repeat Simple_repeat 1 61 0 270 0 0 0 chr4 87852219 87852249 -114476098 + (TG)n Simple_repeat Simple_repeat 2 31 0 241 270 0 16 chr4 87852796 87852859 -114475488 + (CATATA)n Simple_repeat Simple_repeat 3 64 0 305 286 59 25 chr4 87854123 87854242 -114474105 - MIR SINE MIR -67 195 73 484 330 112 0 chr4 87854286 87854510 -114473837 - L2 LINE L2 -193 3120 2872 1888 226 91 18 chr4 87854527 87854712 -114473635 + MLT1F LTR MaLR 1 171 -371 204 40 0 0 chr4 87854712 87854737 -114473610 + (TC)n Simple_repeat Simple_repeat 2 26 0 1888 226 91 18 chr4 87854737 87855055 -114473292 + MLT1F LTR MaLR 171 541 -1 2071 152 39 39 chr4 87855070 87855477 -114472870 + LTR57 LTR ERVL 5 411 0 629 284 108 5 chr4 87855727 87855931 -114472416 - MIR SINE MIR -30 232 8 331 272 10 28 chr4 87856117 87856231 -114472116 - MIR SINE MIR -63 145 36 221 139 0 47 chr4 87856293 87856336 -114472011 - MIR SINE MIR -152 56 16 387 257 9 18 chr4 87857388 87857501 -114470846 - MIR SINE MIR -27 235 124 337 185 370 0 chr4 87857609 87857690 -114470657 - MIR SINE MIR -109 153 43 2027 93 33 118 chr4 87857892 87858290 -114470057 - THE1B LTR MaLR 0 364 1 359 327 34 34 chr4 87858404 87858612 -114469735 + L2 LINE L2 3065 3272 0 1057 288 97 41 chr4 87858750 87859267 -114469080 + MLT1H LTR MaLR 4 549 0 440 290 84 8 chr4 87859487 87859618 -114468729 - L2 LINE L2 0 3272 3132 311 323 36 36 chr4 87860211 87860378 -114467969 + Charlie8 DNA MER1_type 1 167 -2250 540 323 65 5 chr4 87860517 87860718 -114467629 + MIR SINE MIR 8 220 -42 28 0 0 0 chr4 87860744 87860772 -114467575 + AT_rich Low_complexity Low_complexity 1 28 0 671 210 0 0 chr4 87860862 87860986 -114467361 + AluJb SINE Alu 1 124 -188 388 322 52 40 chr4 87861039 87861213 -114467134 + L2 LINE L2 3094 3269 -3 181 217 72 60 chr4 87861210 87861293 -114467054 + L2 LINE L2 3091 3174 -139 * 242 286 32 76 chr4 87861794 87861988 -114466359 - MIR SINE MIR -62 146 7 602 308 34 68 chr4 87862663 87862932 -114465415 - MIR SINE MIR 0 262 2 1859 118 37 4 chr4 87863978 87864250 -114464097 + AluSx SINE Alu 19 299 -13 282 199 122 76 chr4 87865081 87865169 -114463178 + MER117 DNA MER1_type 11 108 -89 1726 147 132 0 chr4 87865169 87865488 -114462859 + MLT1A1 LTR MaLR 5 365 0 282 199 122 76 chr4 87865488 87865530 -114462817 + MER117 DNA MER1_type 108 147 -50 293 253 21 21 chr4 87865635 87865730 -114462617 - MLT1I LTR MaLR 0 409 315 809 245 65 55 chr4 87866285 87866702 -114461645 - LTR33 LTR ERVL -56 465 45 534 273 60 111 chr4 87867019 87867540 -114460807 - L2 LINE L2 0 3272 2521 1763 223 17 28 chr4 87867678 87868145 -114460202 - MLT1C LTR MaLR 0 467 6 183 146 55 18 chr4 87868539 87868594 -114459753 + GA-rich Low_complexity Low_complexity 4 60 0 393 261 85 57 chr4 87868758 87868934 -114459413 - MIR SINE MIR -80 182 2 206 176 0 0 chr4 87868969 87869003 -114459344 - L2 LINE L2 -1 3271 3238 251 284 0 25 chr4 87869026 87869107 -114459240 - L2 LINE L2 -805 2509 2431 609 284 16 33 chr4 87869359 87869542 -114458805 - MIR3 SINE MIR -14 194 15 23 0 0 0 chr4 87869880 87869903 -114458444 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr4 87869948 87869984 -114458363 + AT_rich Low_complexity Low_complexity 1 36 0 621 308 38 8 chr4 87870743 87870980 -114457367 + MIR SINE MIR 4 247 -15 353 327 38 6 chr4 87871990 87872149 -114456198 - L1ME4a LINE L1 -191 5930 5767 1900 213 47 9 chr4 87873376 87873826 -114454521 + MLT1C LTR MaLR 1 467 0 842 198 35 70 chr4 87873844 87874071 -114454276 + MER20 DNA MER1_type 1 219 0 252 0 0 0 chr4 87874429 87874457 -114453890 + (TG)n Simple_repeat Simple_repeat 1 28 0 1742 138 16 0 chr4 87874457 87874710 -114453637 - AluSx SINE Alu -33 279 23 493 119 0 0 chr4 87874728 87874795 -114453552 - AluS SINE Alu -245 68 2 3446 57 7 0 chr4 87874865 87875303 -114453044 + L1PA7 LINE L1 5714 6154 0 189 0 0 0 chr4 87875320 87875341 -114453006 + (A)n Simple_repeat Simple_repeat 1 21 0 24 32 0 0 chr4 87875364 87875395 -114452952 + AT_rich Low_complexity Low_complexity 1 31 0 1380 165 64 28 chr4 87876270 87876597 -114451750 + MER44D DNA MER2_type 1 609 0 184 232 145 14 chr4 87877234 87877303 -114451044 - MIR3 SINE MIR -49 159 82 304 272 64 24 chr4 87877335 87877460 -114450887 - L1ME4a LINE L1 0 6121 5992 317 261 100 0 chr4 87877636 87877766 -114450581 - L1ME4a LINE L1 -364 5757 5615 439 286 138 22 chr4 87880640 87880864 -114447483 + MIR SINE MIR 13 262 0 275 299 28 21 chr4 87881806 87881950 -114446397 + MER117 DNA MER1_type 53 197 0 1294 186 14 35 chr4 87882792 87883077 -114445270 + L1MB5 LINE L1 5890 6168 -6 359 229 96 72 chr4 87883104 87883396 -114444951 + L1MC4 LINE L1 7714 8012 -30 505 321 167 32 chr4 87883505 87883744 -114444603 - L2 LINE L2 0 3272 2980 2814 158 8 4 chr4 87883744 87884225 -114444122 - MER31A LTR ERV1 0 485 3 505 321 167 32 chr4 87884225 87884296 -114444051 - L2 LINE L2 -292 2980 2920 462 264 20 40 chr4 87886516 87886633 -114441714 + MIR SINE MIR 35 150 -112 3330 48 0 70 chr4 87886633 87887115 -114441232 + LTR7 LTR ERV1 1 448 -2 462 264 20 40 chr4 87887115 87887145 -114441202 + MIR SINE MIR 150 179 -83 315 302 104 55 chr4 87887242 87887402 -114440945 - MIR SINE MIR -36 226 53 2046 125 27 0 chr4 87887402 87887697 -114440650 + AluSq SINE Alu 1 303 -10 315 302 104 55 chr4 87887697 87887738 -114440609 - MIR SINE MIR -209 53 15 601 303 70 35 chr4 87888110 87888397 -114439950 + Charlie2 DNA MER1_type 1 297 -2485 2246 206 70 41 chr4 87888428 87889350 -114438997 + Charlie2 DNA MER1_type 1913 2861 -1 1676 237 22 2 chr4 87891027 87891437 -114436910 + Charlie4a DNA MER1_type 2 419 -89 900 248 38 0 chr4 87891829 87892039 -114436308 - MER20 DNA MER1_type -1 218 1 248 347 91 100 chr4 87892428 87892878 -114435469 + L2 LINE L2 2344 2789 -525 1350 181 55 51 chr4 87892926 87893218 -114435129 - AluJb SINE Alu -19 293 1 228 292 115 0 chr4 87893253 87893366 -114434981 - MIR SINE MIR 0 262 137 386 278 90 35 chr4 87893420 87893564 -114434783 + L2 LINE L2 3121 3272 0 528 235 86 22 chr4 87894969 87895169 -114433178 + L1MC4 LINE L1 6441 6663 -1366 925 240 31 8 chr4 87895176 87895430 -114432917 + L1MC4 LINE L1 6816 7075 -967 1696 171 112 83 chr4 87895454 87896010 -114432337 + L1MC4 LINE L1 7265 7836 -206 27 96 0 0 chr4 87896877 87896960 -114431387 + AT_rich Low_complexity Low_complexity 1 83 0 883 213 11 139 chr4 87896975 87897356 -114430991 + L1MC5 LINE L1 6626 6957 -1004 283 299 39 19 chr4 87897401 87897555 -114430792 + L1MC5 LINE L1 7081 7237 -724 7758 15 0 2 chr4 87897701 87898924 -114429423 + L1PA3 LINE L1 4923 6142 -13 209 32 0 32 chr4 87898927 87898958 -114429389 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 21 0 0 0 chr4 87899028 87899049 -114429298 + AT_rich Low_complexity Low_complexity 1 21 0 478 268 0 0 chr4 87899410 87899507 -114428840 + MIR3 SINE MIR 81 177 -31 324 319 103 17 chr4 87900247 87900363 -114427984 - L2 LINE L2 -1 3271 3146 818 277 44 33 chr4 87900896 87901167 -114427180 - LTR33 LTR ERVL -247 274 1 225 276 53 0 chr4 87901180 87901256 -114427091 + L3 LINE CR1 487 566 -1011 284 304 225 14 chr4 87901320 87901600 -114426747 + L3 LINE CR1 703 1041 -536 232 250 188 0 chr4 87902062 87902158 -114426189 - MIR SINE MIR -18 244 131 23 33 0 0 chr4 87902809 87902839 -114425508 + AT_rich Low_complexity Low_complexity 1 30 0 229 208 21 0 chr4 87904174 87904222 -114424125 + GA-rich Low_complexity Low_complexity 4 52 0 216 0 0 0 chr4 87904927 87904951 -114423396 + (CA)n Simple_repeat Simple_repeat 2 25 0 609 207 35 12 chr4 87905061 87905230 -114423117 + MER104 DNA Tc2 6 178 -2 207 172 31 16 chr4 87907165 87907229 -114421118 + (TTTG)n Simple_repeat Simple_repeat 2 66 0 299 215 89 0 chr4 87907232 87907311 -114421036 - Charlie8 DNA MER1_type -2262 155 70 353 306 106 106 chr4 87907652 87908048 -114420299 - L2 LINE L2 -11 3261 2866 22 0 0 0 chr4 87909049 87909071 -114419276 + AT_rich Low_complexity Low_complexity 1 22 0 214 122 54 40 chr4 87909713 87909787 -114418560 + (TA)n Simple_repeat Simple_repeat 2 76 0 365 271 63 38 chr4 87909788 87910254 -114418093 - L1M LINE L1 -743 5403 4945 348 182 26 13 chr4 87910267 87910344 -114418003 - MER4D LTR ERV1 0 903 826 227 98 0 115 chr4 87910360 87910421 -114417926 - L1MA4A LINE L1 -5 6298 6245 1291 244 25 0 chr4 87910555 87910838 -114417509 - MER4D LTR ERV1 -82 821 532 1279 120 0 0 chr4 87910858 87911041 -114417306 - MER49 LTR ERV1 -629 294 112 1900 179 18 9 chr4 87911042 87911382 -114416965 - MER61A LTR ERV1 0 343 1 26056 102 34 17 chr4 87911382 87915674 -114412673 - MER61A-int LTR ERV1 0 5217 1 1811 157 48 15 chr4 87915674 87916006 -114412341 - MER61A LTR ERV1 0 343 1 743 140 0 9 chr4 87916006 87916120 -114412227 - MER49 LTR ERV1 -809 114 2 501 318 118 14 chr4 87916495 87917002 -114411345 - L1M4 LINE L1 -1579 4567 4008 236 194 16 0 chr4 87917003 87917065 -114411282 + L1M4 LINE L1 3904 3966 -2180 678 260 26 40 chr4 87917096 87917323 -114411024 + LTR33 LTR ERVL 298 521 0 189 213 88 50 chr4 87917560 87917640 -114410707 - MER5C DNA MER1_type -239 85 3 824 218 105 34 chr4 87917841 87918107 -114410240 - L1ME2 LINE L1 -11 6153 5869 185 385 23 0 chr4 87918347 87918477 -114409870 + L2 LINE L2 2715 2847 -467 767 270 118 41 chr4 87919194 87919583 -114408764 - MLT1L LTR MaLR -188 427 9 373 227 23 23 chr4 87921185 87921273 -114407074 - MIR SINE MIR -24 238 151 4528 107 38 7 chr4 87921275 87922068 -114406279 + L1PA10 LINE L1 5141 5954 -214 195 256 0 0 chr4 87922071 87922114 -114406233 - MER5B DNA MER1_type -23 155 113 883 237 105 0 chr4 87922123 87922351 -114405996 + L1ME LINE L1 5435 5686 -480 832 219 83 0 chr4 87922825 87923017 -114405330 - MER3 DNA MER1_type -1 208 1 1106 236 86 25 chr4 87923338 87923618 -114404729 - AluJo SINE Alu -5 297 1 1236 71 47 0 chr4 87924575 87924744 -114403603 - MER20 DNA MER1_type 0 219 43 201 94 0 0 chr4 87925527 87925559 -114402788 + (GA)n Simple_repeat Simple_repeat 1 32 0 260 260 52 0 chr4 87926108 87926185 -114402162 - MIR SINE MIR -58 204 124 1571 17 0 0 chr4 87926916 87927095 -114401252 - L1PA5 LINE L1 -11 6143 5965 417 20 0 0 chr4 87927699 87927749 -114400598 + (TA)n Simple_repeat Simple_repeat 2 51 0 214 200 0 55 chr4 87928562 87928617 -114399730 + MIR3 SINE MIR 144 195 -13 184 245 61 0 chr4 87928708 87928757 -114399590 + L2 LINE L2 3221 3272 0 189 0 0 0 chr4 87928941 87928962 -114399385 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 225 339 52 8 chr4 87929049 87929181 -114399166 - MIR SINE MIR -69 139 38 501 230 118 31 chr4 87929787 87929948 -114398399 - L2 LINE L2 -23 3290 3116 862 202 39 62 chr4 87930957 87931143 -114397204 + MER112 DNA MER1_type 1 181 -79 2844 116 45 2 chr4 87931143 87931590 -114396757 + L1PA16 LINE L1 5696 6161 -5 862 202 39 62 chr4 87931590 87931660 -114396687 + MER112 DNA MER1_type 181 251 -9 248 238 88 25 chr4 87932369 87932449 -114395898 - MER97a DNA MER1_type? -15 879 795 2107 113 3 3 chr4 87932542 87932833 -114395514 - AluSq SINE Alu -18 295 5 32 0 0 0 chr4 87932893 87932925 -114395422 + AT_rich Low_complexity Low_complexity 1 32 0 405 131 16 0 chr4 87932949 87933010 -114395337 + AluS SINE Alu 3 64 -254 50 65 0 0 chr4 87933015 87933107 -114395240 + AT_rich Low_complexity Low_complexity 1 92 0 1472 171 75 4 chr4 87933697 87934162 -114394185 - MER97c DNA MER1_type? -328 566 1 311 40 0 40 chr4 87934339 87934389 -114393958 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 712 280 72 21 chr4 87934570 87934806 -114393541 + MIR SINE MIR 13 260 -2 289 250 84 23 chr4 87935553 87935670 -114392677 - MIR SINE MIR -73 135 28 201 129 0 0 chr4 87935844 87935875 -114392472 + (TG)n Simple_repeat Simple_repeat 1 31 0 2200 144 47 0 chr4 87936280 87936621 -114391726 + LTR18A LTR ERVL 1 357 0 304 284 0 34 chr4 87937152 87937240 -114391107 - L2 LINE L2 -5 3267 3183 270 0 0 0 chr4 87938923 87938953 -114389394 + (T)n Simple_repeat Simple_repeat 1 30 0 303 290 37 37 chr4 87939393 87939500 -114388847 - L2 LINE L2 -10 3303 3197 1946 95 11 25 chr4 87939844 87940205 -114388142 - AluSg SINE Alu 0 357 1 182 371 151 28 chr4 87940226 87940544 -114387803 - L2 LINE L2 -548 2766 2410 201 175 0 0 chr4 87942659 87942699 -114385648 + (CAA)n Simple_repeat Simple_repeat 2 41 0 421 262 209 11 chr4 87942721 87942912 -114385435 - MIR SINE MIR -31 231 3 332 223 138 32 chr4 87943023 87943117 -114385230 - L2 LINE L2 0 3272 3169 1829 181 3 0 chr4 87943331 87943656 -114384691 + AluJb SINE Alu 1 326 0 302 313 70 31 chr4 87943917 87944176 -114384171 - L1ME LINE L1 -340 5781 5513 236 289 10 52 chr4 87944239 87944336 -114384011 - MIR SINE MIR -50 212 120 182 311 126 7 chr4 87947970 87948105 -114380242 - L2 LINE L2 -1007 2307 2157 259 264 45 73 chr4 87948143 87948321 -114380026 - L2 LINE L2 -1272 2042 1870 189 107 0 0 chr4 87948561 87948589 -114379758 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 318 50 0 0 chr4 87948588 87948628 -114379719 + (CA)n Simple_repeat Simple_repeat 2 41 0 189 0 0 0 chr4 87948849 87948870 -114379477 + (T)n Simple_repeat Simple_repeat 1 21 0 410 302 146 38 chr4 87948980 87949192 -114379155 - MIR SINE MIR -25 237 3 257 253 21 32 chr4 87951194 87951289 -114377058 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 1545 209 74 36 chr4 87951743 87952188 -114376159 - MLT1C LTR MaLR 0 467 6 1992 136 14 0 chr4 87952280 87952599 -114375748 + AluSx SINE Alu 1 323 0 814 188 80 0 chr4 87952667 87952843 -114375504 - MER3 DNA MER1_type -2 207 18 2289 107 0 3 chr4 87953031 87953331 -114375016 - AluSg SINE Alu -11 299 1 236 229 0 0 chr4 87953355 87953403 -114374944 + L2 LINE L2 3224 3271 -1 420 20 0 0 chr4 87954054 87954103 -114374244 + (CA)n Simple_repeat Simple_repeat 2 50 0 807 257 13 17 chr4 87954509 87954746 -114373601 + L1ME1 LINE L1 5922 6157 -9 531 287 94 45 chr4 87954966 87955297 -114373050 + MLT1I LTR MaLR 63 409 0 26 0 0 0 chr4 87955538 87955564 -114372783 + AT_rich Low_complexity Low_complexity 1 26 0 2865 130 33 10 chr4 87957142 87957657 -114370690 - L1MA4 LINE L1 -5 6295 5769 4871 142 14 15 chr4 87957657 87958671 -114369676 - L1PA16 LINE L1 0 6166 5154 1062 102 0 0 chr4 87958854 87959011 -114369336 + L1P4 LINE L1 5644 5800 -366 810 135 48 0 chr4 87959376 87959502 -114368845 - AluSq/x SINE Alu -181 132 1 441 276 42 78 chr4 87960246 87960312 -114368035 - MER5A DNA MER1_type 0 189 122 2362 42 0 3 chr4 87960312 87960619 -114367728 + AluY SINE Alu 1 306 0 441 276 42 78 chr4 87960619 87960743 -114367604 - MER5A DNA MER1_type -67 122 5 7042 59 13 61 chr4 87961166 87963036 -114365311 - SVA Other Other -551 1386 11 187 122 41 41 chr4 87963359 87963408 -114364939 + (CTATA)n Simple_repeat Simple_repeat 2 50 0 223 260 229 0 chr4 87963675 87963771 -114364576 - L2 LINE L2 -1 3312 3195 466 207 223 0 chr4 87964164 87964285 -114364062 + MIR SINE MIR 7 154 -108 239 161 18 0 chr4 87964639 87964695 -114363652 + (CA)n Simple_repeat Simple_repeat 2 58 0 325 201 21 7 chr4 87964788 87964937 -114363410 + (CA)n Simple_repeat Simple_repeat 1 151 0 1335 231 9 19 chr4 87965123 87965448 -114362899 + L1ME1 LINE L1 5835 6156 -10 267 225 0 0 chr4 87965575 87965646 -114362701 + (TA)n Simple_repeat Simple_repeat 1 71 0 195 327 64 0 chr4 87965669 87965779 -114362568 - L2 LINE L2 -398 2916 2800 245 355 9 55 chr4 87965985 87966095 -114362252 + MIR3 SINE MIR 79 183 -25 308 149 0 15 chr4 87966651 87966718 -114361629 + (TG)n Simple_repeat Simple_repeat 1 66 0 2094 114 11 0 chr4 87968462 87968778 -114359569 - AluSx SINE Alu 0 319 1 23 0 0 0 chr4 87969380 87969403 -114358944 + AT_rich Low_complexity Low_complexity 1 23 0 202 275 121 22 chr4 87970867 87970958 -114357389 + MIR3 SINE MIR 88 187 -21 2394 245 89 19 chr4 87971239 87971773 -114356574 + L1ME3 LINE L1 4670 5165 -997 387 0 0 0 chr4 87971773 87971816 -114356531 + (TA)n Simple_repeat Simple_repeat 1 43 0 2394 245 89 19 chr4 87971816 87972674 -114355673 + L1ME3 LINE L1 5165 6161 -1 195 42 0 0 chr4 87972694 87972718 -114355629 + (TA)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr4 87973257 87973279 -114355068 + AT_rich Low_complexity Low_complexity 1 22 0 192 286 60 24 chr4 87973617 87973701 -114354646 - MIR SINE MIR -65 143 57 2109 105 28 0 chr4 87974447 87974733 -114353614 - AluSg SINE Alu -16 294 1 250 379 39 0 chr4 87974795 87974898 -114353449 - MIR3 SINE MIR 0 208 102 615 255 147 0 chr4 87975293 87975477 -114352870 + MIR SINE MIR 15 225 -37 312 27 0 0 chr4 87975506 87975543 -114352804 + (ATG)n Simple_repeat Simple_repeat 1 37 0 254 286 0 0 chr4 87975736 87975799 -114352548 + L2 LINE L2 3210 3272 0 26 0 0 0 chr4 87976987 87977013 -114351334 + AT_rich Low_complexity Low_complexity 1 26 0 243 0 0 0 chr4 87977551 87977578 -114350769 + (A)n Simple_repeat Simple_repeat 1 27 0 724 174 188 0 chr4 87977934 87978078 -114350269 - FAM SINE Alu -3 172 2 311 318 60 43 chr4 87978958 87979191 -114349156 + MARNA DNA Mariner 154 390 -196 233 227 40 13 chr4 87979204 87979279 -114349068 + MARNA DNA Mariner 311 387 -199 21 0 0 0 chr4 87979381 87979402 -114348945 + AT_rich Low_complexity Low_complexity 1 21 0 331 357 0 0 chr4 87979650 87979734 -114348613 + L2 LINE L2 3160 3243 -29 294 29 0 0 chr4 87980005 87980040 -114348307 + (CA)n Simple_repeat Simple_repeat 1 35 0 520 226 67 0 chr4 87980413 87980577 -114347770 - Charlie8 DNA MER1_type -2193 224 50 311 286 90 17 chr4 87980642 87980820 -114347527 + L1MCc LINE L1 117 307 -6116 1202 209 142 0 chr4 87981545 87981830 -114346517 - AluSx SINE Alu 0 321 1 2376 152 17 0 chr4 87982647 87982996 -114345351 + LTR18A LTR ERVL 3 357 0 1993 200 5 22 chr4 87983010 87983425 -114344922 + HERVL18 LTR ERVL 9 416 -5631 2301 180 27 23 chr4 87983425 87984057 -114344290 + HERVL18 LTR ERVL 1112 1810 -4237 1346 128 22 2 chr4 87984066 87984337 -114344010 + HERVL18 LTR ERVL 2119 2452 -3595 * 2677 177 0 2 chr4 87984336 87984788 -114343559 + HERVL18 LTR ERVL 2720 3170 -2877 1557 149 0 4 chr4 87984848 87985090 -114343257 + HERVL18 LTR ERVL 3339 3579 -2468 626 117 11 0 chr4 87985092 87985186 -114343161 + HERVL18 LTR ERVL 4394 4488 -1559 2543 129 20 0 chr4 87985312 87985662 -114342685 + LTR18A LTR ERVL 1 357 0 22 0 0 0 chr4 87986603 87986625 -114341722 + AT_rich Low_complexity Low_complexity 1 22 0 429 287 39 8 chr4 87986670 87986799 -114341548 + MIR SINE MIR 55 187 -75 281 271 216 15 chr4 87988265 87988464 -114339883 + L2 LINE L2 2589 2827 -487 2147 146 0 20 chr4 87988519 87988862 -114339485 + MER1B DNA MER1_type 1 336 -1 2159 105 0 30 chr4 87989408 87989712 -114338635 + AluY SINE Alu 1 295 -16 26743 36 16 1 chr4 87989857 87994743 -114333604 + L1P LINE L1 7 5013 -1133 4930 82 36 11 chr4 88044762 88045879 -114282468 - L1PA7 LINE L1 -134 6335 5194 2936 96 20 0 chr4 88045878 88046338 -114282009 - L1PA7 LINE L1 -4990 1471 1003 * 568 291 29 6 chr4 88046632 88046807 -114281540 + L2 LINE L2 2447 2625 -689 393 299 75 75 chr4 88047789 88047846 -114280501 - L1MEc LINE L1 -4418 2145 2089 321 26 0 0 chr4 88047846 88047884 -114280463 + (CA)n Simple_repeat Simple_repeat 1 38 0 393 299 75 75 chr4 88047884 88048067 -114280280 - L1MEc LINE L1 -4473 2090 1905 2018 97 13 29 chr4 88048229 88048539 -114279808 - AluY SINE Alu -6 305 1 1129 279 43 14 chr4 88048545 88049053 -114279294 - L1MEc LINE L1 -4544 1840 1318 834 178 16 38 chr4 88049352 88049537 -114278810 - MER20 DNA MER1_type -4 215 35 393 322 34 14 chr4 88054086 88054232 -114274115 + MIR SINE MIR 49 197 -65 2022 119 54 0 chr4 88054691 88054969 -114273378 - AluSx SINE Alu -19 293 1 35 16 0 49 chr4 88055091 88055152 -114273195 + AT_rich Low_complexity Low_complexity 1 58 0 285 361 93 0 chr4 88055478 88055575 -114272772 - MER91A DNA MER1_type -3 193 88 * 622 305 32 37 chr4 88055555 88055745 -114272602 - MER91A DNA MER1_type -6 190 2 340 268 0 10 chr4 88055782 88055879 -114272468 + LTR67 LTR ERVL 462 557 0 21945 31 1 0 chr4 88056622 88059394 -114268953 - L1P LINE L1 -1927 4219 1446 266 200 0 0 chr4 88059562 88059612 -114268735 + L2 LINE L2 2201 2250 -1064 621 327 166 36 chr4 88060077 88061005 -114267342 + L2 LINE L2 2248 3305 -8 190 296 0 0 chr4 88061065 88061109 -114267238 - L2 LINE L2 -15 3298 3255 4104 139 20 6 chr4 88061885 88062690 -114265657 - L1MA4A LINE L1 -23 6277 5410 249 246 131 8 chr4 88062877 88063007 -114265340 + LTR33 LTR ERVL 21 166 -355 464 211 141 141 chr4 88064376 88064825 -114263522 + MLT1J LTR MaLR 1 452 -59 2299 101 0 13 chr4 88064825 88065132 -114263215 + AluSq SINE Alu 1 303 -10 464 211 141 141 chr4 88065132 88065193 -114263154 + MLT1J LTR MaLR 451 511 0 556 88 33 0 chr4 88066274 88066365 -114261982 + CT-rich Low_complexity Low_complexity 2 95 0 187 340 0 0 chr4 88067631 88067681 -114260666 - L2 LINE L2 -17 3255 3206 1632 179 28 7 chr4 88067838 88068128 -114260219 + AluJb SINE Alu 1 296 -16 662 328 72 54 chr4 88068217 88068506 -114259841 - L2 LINE L2 -337 2977 2676 2443 81 3 0 chr4 88068506 88068815 -114259532 + AluY SINE Alu 1 310 -1 662 328 72 54 chr4 88068815 88068985 -114259362 - L2 LINE L2 -638 2676 2510 288 251 404 0 chr4 88069898 88070081 -114258266 - MIR SINE MIR 0 262 6 8214 24 0 0 chr4 88070501 88072236 -114256111 + L1PA2 LINE L1 4421 6155 0 189 259 19 0 chr4 88072294 88072348 -114255999 - MIR SINE MIR -10 252 198 302 309 80 34 chr4 88072689 88073388 -114254959 + L1ME LINE L1 3437 4167 -1979 722 336 78 43 chr4 88073389 88074233 -114254114 + L1ME LINE L1 4436 5309 -837 277 287 67 67 chr4 88074282 88074682 -114253665 + L1ME LINE L1 5336 5752 -410 230 250 69 28 chr4 88074687 88074759 -114253588 - L2 LINE L2 -47 3225 3151 314 279 95 62 chr4 88075150 88075302 -114253045 + MIR SINE MIR 6 166 -66 1974 302 147 13 chr4 88075438 88076356 -114251991 + L2 LINE L2 143 1183 -2131 180 333 97 21 chr4 88077228 88077321 -114251026 - L2 LINE L2 0 3272 3173 239 243 28 28 chr4 88077657 88077764 -114250583 + L1MD3 LINE L1 36 142 -6281 * 250 304 24 82 chr4 88077762 88078055 -114250292 + L1MD3 LINE L1 518 793 -5629 333 366 40 17 chr4 88078231 88078406 -114249941 + L1MD3 LINE L1 947 1125 -5297 745 247 102 72 chr4 88078410 88079173 -114249174 + L1MD3 LINE L1 1056 2081 -4968 423 0 0 0 chr4 88079173 88079220 -114249127 + (CA)n Simple_repeat Simple_repeat 2 48 0 745 247 102 72 chr4 88079220 88079300 -114249047 + L1MD3 LINE L1 2081 2157 -4892 5067 209 84 108 chr4 88079316 88081100 -114247247 + L1MD3 LINE L1 4474 6299 -2491 2414 159 39 2 chr4 88081100 88081541 -114246806 + L1MC1 LINE L1 5875 6331 -2 5067 209 84 108 chr4 88081541 88082018 -114246329 + L1MD3 LINE L1 6299 6786 -2004 642 134 0 164 chr4 88082018 88082189 -114246158 + FLAM_C SINE Alu 1 143 0 5067 209 84 108 chr4 88082189 88083473 -114244874 + L1MD3 LINE L1 6786 8099 -691 685 165 0 0 chr4 88083473 88083588 -114244759 + MLT1F1 LTR MaLR 5 119 -448 5067 209 84 108 chr4 88083588 88084173 -114244174 + L1MD3 LINE L1 8099 8781 -9 2155 136 0 0 chr4 88084173 88084467 -114243880 + AluSx SINE Alu 1 294 -18 299 296 210 27 chr4 88085438 88085624 -114242723 - MIR SINE MIR -36 226 7 203 348 56 52 chr4 88085770 88086040 -114242307 - L2 LINE L2 -91 3181 2911 387 246 64 70 chr4 88086302 88086473 -114241874 + MER102a DNA MER1_type 161 330 0 2234 172 98 13 chr4 88086785 88087245 -114241102 - MLT1D LTR MaLR 0 505 7 180 348 126 7 chr4 88087562 88087697 -114240650 - MIR SINE MIR -78 184 34 345 248 130 70 chr4 88087871 88088392 -114239955 - LTR33A LTR ERVL -2 521 1 303 252 206 0 chr4 88088413 88088520 -114239827 - MIR SINE MIR -10 252 124 888 243 37 14 chr4 88088761 88088979 -114239368 + MIR SINE MIR 7 229 -33 22 0 0 0 chr4 88088995 88089017 -114239330 + AT_rich Low_complexity Low_complexity 1 22 0 4318 132 6 0 chr4 88089223 88089875 -114238472 + L1PB3 LINE L1 5497 6152 -2 2620 41 0 0 chr4 88089997 88090311 -114238036 + L1PA7 LINE L1 5834 6147 -7 333 164 0 0 chr4 88091192 88091259 -114237088 + L2 LINE L2 104 170 -3144 193 323 48 0 chr4 88091385 88091447 -114236900 + L2 LINE L2 3227 3291 -22 751 217 31 0 chr4 88092425 88092586 -114235761 + MIR SINE MIR 71 236 -26 603 220 49 84 chr4 88092580 88092826 -114235521 - MIR SINE MIR -2 260 27 * 327 321 143 44 chr4 88093184 88093499 -114234848 - L2 LINE L2 -18 3295 2950 183 320 55 23 chr4 88093537 88093665 -114234682 - L2 LINE L2 -432 2882 2751 298 314 132 36 chr4 88093764 88094067 -114234280 - L2 LINE L2 -735 2579 2248 1114 322 97 25 chr4 88094393 88094992 -114233355 - L3 LINE CR1 -11 1566 925 226 354 31 0 chr4 88097099 88097164 -114231183 - L2 LINE L2 -50 3222 3156 395 310 83 21 chr4 88097201 88097346 -114231001 + MIR3 SINE MIR 42 195 -13 22 70 0 0 chr4 88098433 88098476 -114229871 + AT_rich Low_complexity Low_complexity 1 43 0 477 248 39 13 chr4 88098482 88098635 -114229712 - MER69 DNA AcHobo -156 2370 2214 495 152 80 24 chr4 88098638 88098763 -114229584 + MER53 DNA DNA 1 132 -57 699 206 25 7 chr4 88098768 88099036 -114229311 + L1MA7 LINE L1 5909 6287 -4 407 143 0 14 chr4 88099049 88099119 -114229228 + MER53 DNA DNA 121 189 0 658 223 59 20 chr4 88099127 88099329 -114229018 - MER69 DNA AcHobo -318 2208 1999 455 289 15 7 chr4 88099316 88099451 -114228896 - MER69 DNA AcHobo -658 568 433 * 870 301 70 7 chr4 88099472 88099758 -114228589 - MER69 DNA AcHobo -2222 304 1 205 208 21 31 chr4 88099875 88099971 -114228376 + CT-rich Low_complexity Low_complexity 1 95 0 396 322 59 5 chr4 88100775 88100973 -114227374 - MIR SINE MIR -26 236 20 189 333 164 44 chr4 88101107 88101266 -114227081 + MIR3 SINE MIR 13 190 -18 1610 171 9 113 chr4 88101801 88102234 -114226113 + MLT1B LTR MaLR 1 388 -2 1102 166 42 137 chr4 88102503 88102906 -114225441 - MLT1A1 LTR MaLR 0 365 1 446 242 73 68 chr4 88102936 88103155 -114225192 - L2 LINE L2 -5 3308 3089 294 200 94 0 chr4 88103655 88103740 -114224607 + L1ME4a LINE L1 6001 6093 -28 642 284 135 0 chr4 88103903 88104118 -114224229 - MIR SINE MIR -3 259 16 23 33 0 0 chr4 88104178 88104208 -114224139 + AT_rich Low_complexity Low_complexity 1 30 0 209 323 10 21 chr4 88104465 88104561 -114223786 + L2 LINE L2 3219 3313 0 2399 80 3 0 chr4 88105200 88105499 -114222848 - AluY SINE Alu -11 300 1 264 315 100 15 chr4 88105534 88105664 -114222683 - MIR3 SINE MIR -64 144 4 217 395 0 0 chr4 88106110 88106191 -114222156 + L2 LINE L2 3225 3305 -8 205 238 19 124 chr4 88107011 88107116 -114221231 - MIR SINE MIR -46 216 123 1872 129 0 4 chr4 88108283 88108575 -114219772 - AluY SINE Alu 0 310 20 2267 117 0 0 chr4 88109056 88109365 -114218982 + AluSc SINE Alu 1 309 0 279 0 0 0 chr4 88109373 88109404 -114218943 + (TC)n Simple_repeat Simple_repeat 2 32 0 260 53 26 0 chr4 88109501 88109539 -114218808 + (TG)n Simple_repeat Simple_repeat 1 39 0 416 200 164 0 chr4 88110445 88110555 -114217792 - MER3 DNA MER1_type -3 206 79 337 275 201 49 chr4 88110681 88110951 -114217396 - L2 LINE L2 -1310 2004 1776 2256 106 3 0 chr4 88110951 88111252 -114217095 - AluSp SINE Alu -11 302 1 337 275 201 49 chr4 88111252 88111388 -114216959 - L2 LINE L2 -1538 1776 1536 1474 221 10 44 chr4 88111774 88112181 -114216166 + MLT2C1 LTR ERVL 5 397 0 413 333 31 48 chr4 88112992 88113220 -114215127 - MIR SINE MIR -34 228 5 279 321 18 54 chr4 88113605 88113773 -114214574 - MIR SINE MIR -2 260 99 2191 100 3 3 chr4 88114720 88115010 -114213337 - AluSc SINE Alu -19 290 1 241 270 0 0 chr4 88115078 88115141 -114213206 + A-rich Low_complexity Low_complexity 1 63 0 206 174 22 0 chr4 88115674 88115720 -114212627 + CT-rich Low_complexity Low_complexity 4 50 0 25 31 0 0 chr4 88116035 88116067 -114212280 + AT_rich Low_complexity Low_complexity 1 32 0 643 310 143 44 chr4 88117345 88117800 -114210547 - MLT1K LTR MaLR -1 587 88 257 62 0 0 chr4 88118407 88118439 -114209908 - L1PA2 LINE L1 -5027 1119 1088 35400 30 1 0 chr4 88118439 88123487 -114204860 + L1PA2 LINE L1 1103 6155 0 681 216 49 0 chr4 88123525 88123687 -114204660 - Charlie4 DNA MER1_type -1733 228 59 206 342 66 13 chr4 88124812 88124893 -114203454 - L2 LINE L2 -301 2971 2896 1975 138 30 54 chr4 88124893 88125263 -114203084 + MER46B DNA MER2_type 1 236 0 206 342 66 13 chr4 88125263 88125333 -114203014 - L2 LINE L2 -376 2896 2812 25 75 0 0 chr4 88126193 88126246 -114202101 + AT_rich Low_complexity Low_complexity 1 53 0 304 336 91 0 chr4 88126259 88126369 -114201978 - L2 LINE L2 -5 3308 3189 690 208 97 0 chr4 88126988 88127142 -114201205 + AluJb SINE Alu 133 301 -11 222 281 0 0 chr4 88128190 88128247 -114200100 + L2 LINE L2 3251 3307 -6 6556 33 0 0 chr4 88128557 88129365 -114198982 + L1PA5 LINE L1 5369 6176 0 706 303 50 77 chr4 88129722 88130257 -114198090 + LTR33 LTR ERVL 1 521 0 543 229 49 170 chr4 88131296 88131584 -114196763 + MIR SINE MIR 9 261 -1 399 248 89 51 chr4 88132099 88132256 -114196091 - MER117 DNA MER1_type -21 176 14 22 0 0 0 chr4 88133830 88133852 -114194495 + AT_rich Low_complexity Low_complexity 1 22 0 465 293 26 0 chr4 88134042 88134158 -114194189 - MIR3 SINE MIR -52 156 38 581 270 66 73 chr4 88134325 88134584 -114193763 - Charlie8 DNA MER1_type -2155 262 6 24 32 0 0 chr4 88136256 88136287 -114192060 + AT_rich Low_complexity Low_complexity 1 31 0 2505 225 157 41 chr4 88139270 88139513 -114188834 + L1ME1 LINE L1 4944 5157 -1009 374 125 75 0 chr4 88139513 88139593 -114188754 - L1PA14 LINE L1 -2 6159 6074 2505 225 157 41 chr4 88139593 88140421 -114187926 + L1ME1 LINE L1 5157 6161 -5 268 207 98 0 chr4 88140657 88140739 -114187608 + L1MA7 LINE L1 6173 6262 -29 1443 220 96 63 chr4 88141115 88141606 -114186741 + L1MC4 LINE L1 7388 7894 -148 248 184 0 0 chr4 88141616 88141665 -114186682 + L1MC4 LINE L1 7986 8034 -8 3389 122 97 11 chr4 88141952 88142517 -114185830 - LTR18B LTR ERVL 0 614 1 180 77 0 0 chr4 88142605 88142631 -114185716 + (TA)n Simple_repeat Simple_repeat 1 26 0 243 0 0 0 chr4 88143261 88143288 -114185059 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 1263 174 100 44 chr4 88143308 88143440 -114184907 + L1ME2 LINE L1 5782 5905 -259 2059 137 3 0 chr4 88143440 88143732 -114184615 + AluSx SINE Alu 16 308 -4 1263 174 100 44 chr4 88143732 88143960 -114184387 + L1ME2 LINE L1 5905 6162 -2 23 33 0 0 chr4 88144094 88144124 -114184223 + AT_rich Low_complexity Low_complexity 1 30 0 719 166 108 0 chr4 88145300 88145439 -114182908 + L1MC/D LINE L1 5388 5541 -2267 356 268 174 52 chr4 88145713 88146000 -114182347 - L1M4 LINE L1 -1092 5054 4733 4680 155 32 51 chr4 88146015 88147259 -114181088 + L1PA16 LINE L1 4697 5890 -276 2927 90 18 40 chr4 88147259 88147713 -114180634 + MLT2A1 LTR ERVL 1 444 0 4680 155 32 51 chr4 88147713 88147880 -114180467 + L1PA16 LINE L1 5890 6059 -107 326 120 0 0 chr4 88147882 88147932 -114180415 + L1PA16 LINE L1 6107 6156 -10 2002 124 18 0 chr4 88148550 88148822 -114179525 + AluSc SINE Alu 6 285 -24 234 0 0 0 chr4 88148822 88148848 -114179499 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1276 159 43 43 chr4 88149195 88149453 -114178894 + AluJb SINE Alu 3 260 -52 180 0 0 0 chr4 88149483 88149503 -114178844 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 480 276 22 22 chr4 88150982 88151116 -114177231 - MER5A DNA MER1_type 0 189 56 358 287 54 36 chr4 88151646 88151740 -114176607 + MIR SINE MIR 62 162 -100 1684 86 0 9 chr4 88151740 88151961 -114176386 - AluY SINE Alu -9 302 84 358 287 54 36 chr4 88151961 88152033 -114176314 + MIR SINE MIR 162 231 -31 456 313 107 26 chr4 88152059 88152292 -114176055 + MIR SINE MIR 1 252 -10 213 211 0 0 chr4 88152307 88152364 -114175983 + CT-rich Low_complexity Low_complexity 5 61 0 260 319 59 34 chr4 88153655 88153774 -114174573 - L2 LINE L2 -8 3264 3143 319 245 28 11 chr4 88155798 88155981 -114172366 + CT-rich Low_complexity Low_complexity 1 186 0 1235 261 68 75 chr4 88155988 88156865 -114171482 - L1ME3A LINE L1 -1 6238 5356 2385 79 7 3 chr4 88156865 88157170 -114171177 - AluSq SINE Alu -6 307 2 1235 261 68 75 chr4 88157170 88157729 -114170618 - L1ME3A LINE L1 -883 5356 4795 1922 138 14 0 chr4 88157729 88158019 -114170328 + AluJo SINE Alu 3 296 -16 1235 261 68 75 chr4 88158019 88158112 -114170235 - L1ME3A LINE L1 -1444 4795 4703 1998 106 0 14 chr4 88158112 88158394 -114169953 + L1PA8A LINE L1 5842 6119 -12 1235 261 68 75 chr4 88158394 88158699 -114169648 - L1ME3A LINE L1 -1536 4703 4418 1488 256 71 67 chr4 88158710 88158824 -114169523 - L1ME3A LINE L1 -4746 1650 1538 2171 109 0 16 chr4 88158824 88159128 -114169219 + AluSq SINE Alu 1 299 -14 1488 256 71 67 chr4 88159128 88160003 -114168344 - L1ME3A LINE L1 -4858 1538 657 17004 94 10 22 chr4 88160522 88161824 -114166523 - L1P LINE L1 -2005 4141 2885 2035 140 0 23 chr4 88161824 88162132 -114166215 - AluSx SINE Alu 0 312 12 17004 94 10 22 chr4 88162132 88163408 -114164939 - L1P LINE L1 -3261 2885 1595 8775 89 7 2 chr4 88163408 88165423 -114162924 + L1PA7 LINE L1 4134 6154 0 1893 179 3 0 chr4 88165655 88165957 -114162390 + AluJo SINE Alu 2 304 -8 23 33 0 0 chr4 88166136 88166166 -114162181 + AT_rich Low_complexity Low_complexity 1 30 0 392 324 7 22 chr4 88166579 88166718 -114161629 - MIR3 SINE MIR -13 195 59 204 40 0 0 chr4 88167154 88167179 -114161168 + (TA)n Simple_repeat Simple_repeat 2 26 0 251 293 0 13 chr4 88167397 88167472 -114160875 - MLT1G1 LTR MaLR -2 593 520 240 236 0 18 chr4 88167667 88167722 -114160625 - MLT1G LTR MaLR -344 246 193 182 350 0 0 chr4 88168945 88169005 -114159342 + L2 LINE L2 3254 3313 0 285 274 0 32 chr4 88169309 88169404 -114158943 + L1MEd LINE L1 1419 1510 -4862 230 286 0 0 chr4 88169501 88169557 -114158790 + HAL1 LINE L1 1500 1555 -952 316 346 81 7 chr4 88169558 88169694 -114158653 + HAL1 LINE L1 1597 1742 -765 22 0 0 0 chr4 88169939 88169961 -114158386 + AT_rich Low_complexity Low_complexity 1 22 0 322 316 84 7 chr4 88170078 88170233 -114158114 + L1MEd LINE L1 2310 2476 -3908 296 273 130 55 chr4 88170287 88171026 -114157321 + L1MEd LINE L1 2493 3344 -3038 1698 125 113 26 chr4 88171026 88171371 -114156976 - THE1C LTR MaLR 0 375 1 296 273 130 55 chr4 88171371 88171749 -114156598 + L1MEd LINE L1 3344 3693 -2689 7998 61 118 6 chr4 88171750 88172878 -114155469 + L1P LINE L1 1 1254 -4892 215 301 0 27 chr4 88173742 88173815 -114154532 - L2 LINE L2 -15 3257 3187 373 269 143 0 chr4 88175863 88175982 -114152365 - MIR3 SINE MIR -13 195 60 26 74 0 0 chr4 88177343 88177397 -114150950 + AT_rich Low_complexity Low_complexity 1 54 0 1702 170 7 7 chr4 88177421 88177703 -114150644 - AluJb SINE Alu -30 282 1 23 33 0 0 chr4 88178497 88178527 -114149820 + AT_rich Low_complexity Low_complexity 1 30 0 890 182 25 6 chr4 88179032 88179191 -114149156 - MIR SINE MIR -21 241 80 455 152 13 0 chr4 88179193 88179272 -114149075 - MADE1 DNA Mariner 0 80 1 323 242 15 0 chr4 88179272 88179338 -114149009 - MIR SINE MIR -183 79 13 1837 181 43 11 chr4 88179621 88179997 -114148350 + MLT1B LTR MaLR 3 390 0 26 0 0 0 chr4 88180071 88180097 -114148250 + AT_rich Low_complexity Low_complexity 1 26 0 374 258 156 85 chr4 88180301 88180621 -114147726 + Charlie8 DNA MER1_type 4 324 -2093 292 276 113 38 chr4 88180723 88180962 -114147385 + L1MEd LINE L1 4326 4582 -1800 319 337 115 30 chr4 88181145 88181605 -114146742 + L1MEd LINE L1 5122 5620 -762 1328 273 125 39 chr4 88181643 88182921 -114145426 - HAL1 LINE L1 -322 2185 1 197 347 27 33 chr4 88182958 88183108 -114145239 - MIR3 SINE MIR -2 206 58 230 244 0 0 chr4 88183469 88183514 -114144833 + (TG)n Simple_repeat Simple_repeat 1 45 0 240 200 60 0 chr4 88183818 88183868 -114144479 + polypurine Low_complexity Low_complexity 5 57 0 225 0 0 0 chr4 88184825 88184850 -114143497 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 384 22 0 0 chr4 88184849 88184894 -114143453 + (TA)n Simple_repeat Simple_repeat 1 45 0 337 272 95 0 chr4 88185169 88185295 -114143052 + MIR SINE MIR 12 160 -62 207 0 0 0 chr4 88185693 88185716 -114142631 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 315 0 0 0 chr4 88187960 88187995 -114140352 + (TG)n Simple_repeat Simple_repeat 2 36 0 315 321 73 0 chr4 88189250 88189359 -114138988 - MIR SINE MIR -112 150 34 231 47 0 47 chr4 88190079 88190122 -114138225 - L1PA3 LINE L1 -1 6154 6114 2435 81 3 0 chr4 88190298 88190605 -114137742 - AluSx SINE Alu -4 308 1 939 350 111 24 chr4 88190949 88191775 -114136572 - L2 LINE L2 -15 3257 2361 313 265 143 0 chr4 88191827 88191925 -114136422 - L2 LINE L2 -13 3300 3189 2848 127 102 8 chr4 88194077 88194548 -114133799 + MLT2B1 LTR ERVL 1 515 -5 1429 209 119 12 chr4 88194808 88195229 -114133118 + MLT1C LTR MaLR 1 466 -1 386 297 40 27 chr4 88195570 88195718 -114132629 - L2 LINE L2 -2 3311 3162 303 93 0 0 chr4 88195924 88195967 -114132380 + (TG)n Simple_repeat Simple_repeat 2 44 0 2248 95 0 0 chr4 88197471 88197755 -114130592 + AluY SINE Alu 19 302 -9 226 336 160 50 chr4 88198450 88198569 -114129778 - L2 LINE L2 0 3272 3141 333 255 38 102 chr4 88198747 88198904 -114129443 + L1MC4 LINE L1 6608 6754 -1288 474 354 70 22 chr4 88199411 88199767 -114128580 + L2 LINE L2 2328 2700 -614 272 278 56 46 chr4 88199987 88200095 -114128252 + L2 LINE L2 2958 3066 -206 258 313 61 15 chr4 88200172 88200303 -114128044 - L2 LINE L2 -5 3308 3172 315 348 0 0 chr4 88200359 88200451 -114127896 - L2 LINE L2 -222 3091 3000 287 265 44 14 chr4 88200823 88200973 -114127374 - MLT1H LTR MaLR -321 190 27 316 367 32 13 chr4 88200992 88201150 -114127197 + MIR3 SINE MIR 47 207 -1 572 299 90 30 chr4 88201399 88201633 -114126714 + MIR SINE MIR 2 249 -13 375 131 12 24 chr4 88201705 88201789 -114126558 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 425 320 40 63 chr4 88202850 88203002 -114125345 + MIR SINE MIR 4 149 -113 2335 102 0 0 chr4 88203002 88203306 -114125041 + AluSx SINE Alu 1 304 -8 425 320 40 63 chr4 88203306 88203406 -114124941 + MIR SINE MIR 149 250 -12 3324 145 33 31 chr4 88203770 88204353 -114123994 + L1MA7 LINE L1 5615 6201 -90 2189 43 4 0 chr4 88204353 88204611 -114123736 - AluY SINE Alu -9 302 44 3324 145 33 31 chr4 88204611 88204702 -114123645 + L1MA7 LINE L1 6201 6290 -1 2121 126 26 42 chr4 88206067 88206448 -114121899 - THE1C LTR MaLR 0 375 1 183 236 0 36 chr4 88207536 88207591 -114120756 - MIR SINE MIR -63 145 93 4945 179 17 31 chr4 88208209 88209305 -114119042 - L1MC3 LINE L1 -126 7659 6579 203 346 0 13 chr4 88209339 88209417 -114118930 + MIR3 SINE MIR 131 207 -1 24 53 0 0 chr4 88209692 88209730 -114118617 + AT_rich Low_complexity Low_complexity 1 38 0 1384 294 75 17 chr4 88210039 88210519 -114117828 + MLT1G LTR MaLR 70 577 -13 1114 287 53 9 chr4 88210536 88210874 -114117473 - LTR16C LTR ERVL -16 475 123 24 32 0 0 chr4 88211266 88211297 -114117050 + AT_rich Low_complexity Low_complexity 1 31 0 2398 93 0 0 chr4 88211384 88211684 -114116663 + AluSg SINE Alu 1 300 -10 2382 80 0 13 chr4 88212275 88212589 -114115758 + AluY SINE Alu 1 310 -1 26 0 0 0 chr4 88213562 88213588 -114114759 + AT_rich Low_complexity Low_complexity 1 26 0 2807 109 14 16 chr4 88213956 88214387 -114113960 - L1PB2 LINE L1 -13 6138 5709 207 224 0 41 chr4 88215370 88215419 -114112928 - L2 LINE L2 -10 3262 3216 1222 175 5 5 chr4 88215560 88215760 -114112587 + AluSx SINE Alu 1 200 -112 630 171 18 0 chr4 88216023 88216134 -114112213 + AluSx SINE Alu 190 302 -10 608 286 77 39 chr4 88216324 88216558 -114111789 - MIR SINE MIR -1 261 19 292 267 13 155 chr4 88216964 88217196 -114111151 + L2 LINE L2 2985 3183 -89 21 0 0 0 chr4 88217376 88217397 -114110950 + AT_rich Low_complexity Low_complexity 1 21 0 870 295 108 61 chr4 88218465 88219298 -114109049 - L2 LINE L2 -11 3302 2422 903 293 46 42 chr4 88221429 88221866 -114106481 + MLT1H LTR MaLR 11 493 -56 1658 204 80 5 chr4 88221866 88222278 -114106069 + L1MC3 LINE L1 6668 7110 -675 336 322 73 73 chr4 88222357 88222585 -114105762 + L2 LINE L2 2507 2733 -580 2272 170 15 41 chr4 88222585 88222662 -114105685 + L1PB4 LINE L1 5702 5779 -377 198 103 0 0 chr4 88222662 88222691 -114105656 + (TG)n Simple_repeat Simple_repeat 2 30 0 2272 170 15 41 chr4 88222691 88223072 -114105275 + L1PB4 LINE L1 5779 6148 -8 336 322 73 73 chr4 88223072 88223179 -114105168 + L2 LINE L2 2733 2838 -475 1959 136 7 0 chr4 88223179 88223492 -114104855 - AluSq SINE Alu 0 315 1 336 322 73 73 chr4 88223492 88223728 -114104619 + L2 LINE L2 2838 3099 -214 590 262 52 20 chr4 88223740 88223985 -114104362 - MLT1J1 LTR MaLR -72 378 125 1201 75 0 6 chr4 88224271 88224430 -114103917 + AluY SINE Alu 154 311 0 411 249 9 10 chr4 88224521 88224635 -114103712 - MLT1J2 LTR MaLR -236 173 64 699 350 94 23 chr4 88224880 88225440 -114102907 + L2 LINE L2 2719 3313 0 280 259 302 42 chr4 88226337 88226526 -114101821 + MIR SINE MIR 25 262 0 261 328 119 15 chr4 88226884 88227018 -114101329 - L2 LINE L2 0 3272 3125 298 316 61 26 chr4 88227182 88227296 -114101051 + L2 LINE L2 3154 3271 -1 517 289 12 35 chr4 88227372 88227545 -114100802 + MIR SINE MIR 5 173 -89 445 177 13 0 chr4 88227548 88227626 -114100721 - Tigger7 DNA MER2_type -8 2479 2401 1053 184 63 5 chr4 88227626 88227833 -114100514 - Tigger3(Golem) DNA MER2_type -1 3028 2810 720 208 110 0 chr4 88227939 88228093 -114100254 - Tigger7 DNA MER2_type -534 171 1 391 286 77 12 chr4 88228443 88228611 -114099736 - MIR SINE MIR 0 262 84 352 341 98 24 chr4 88228839 88229126 -114099221 - L3b LINE CR1 -26 1557 1250 488 136 45 18 chr4 88229126 88229236 -114099111 - MER33 DNA MER1_type 0 363 251 1472 200 78 80 chr4 88229242 88229727 -114098620 - MLT1D LTR MaLR -21 484 1 375 175 277 7 chr4 88229727 88229864 -114098483 - MER33 DNA MER1_type -102 222 49 2868 218 24 23 chr4 88229864 88230653 -114097694 + L1 LINE L1 2515 3304 -2842 * 15625 143 13 99 chr4 88230650 88234389 -114093958 + L1PA7 LINE L1 1 3419 -2727 3384 129 112 16 chr4 88234389 88235352 -114092995 - MER11A LTR ERVK -11 1255 4 13768 98 3 2 chr4 88235352 88238087 -114090260 + L1PA7 LINE L1 3416 6154 0 4345 201 12 7 chr4 88238087 88239078 -114089269 + L1 LINE L1 3293 4288 -1858 1102 228 9 12 chr4 88239062 88239387 -114088960 + L1 LINE L1 4787 5110 -1036 * 378 326 136 53 chr4 88239748 88240004 -114088343 - L2 LINE L2 0 3272 3039 2531 95 46 0 chr4 88240004 88240352 -114087995 + THE1B LTR MaLR 1 364 0 378 326 136 53 chr4 88240352 88240727 -114087620 - L2 LINE L2 -233 3039 2593 1348 270 151 6 chr4 88240740 88241284 -114087063 + L2 LINE L2 2453 3073 -240 2059 271 90 41 chr4 88241302 88241959 -114086388 - L2 LINE L2 -304 3009 2310 1592 202 14 19 chr4 88241959 88242326 -114086021 - MLT1A1 LTR MaLR 0 365 1 2059 271 90 41 chr4 88242326 88242469 -114085878 - L2 LINE L2 -1003 2310 2175 186 103 0 0 chr4 88243268 88243297 -114085050 + (CACCAT)n Simple_repeat Simple_repeat 1 29 0 414 291 48 94 chr4 88243849 88244158 -114084189 - L2 LINE L2 -94 3219 2925 718 289 9 0 chr4 88244186 88244404 -114083943 + L1ME1 LINE L1 5942 6161 -5 277 216 60 69 chr4 88244638 88244754 -114083593 + MIR SINE MIR 93 207 -55 225 0 0 0 chr4 88245162 88245187 -114083160 + (A)n Simple_repeat Simple_repeat 1 25 0 215 128 0 64 chr4 88245227 88245274 -114083073 + (TTTTC)n Simple_repeat Simple_repeat 4 47 0 188 328 0 15 chr4 88246374 88246441 -114081906 - MIR SINE MIR -98 164 99 2398 117 23 47 chr4 88250351 88250735 -114077612 - THE1C LTR MaLR 0 375 1 1733 263 89 91 chr4 88251906 88253114 -114075233 + L1M2b LINE L1 81 1285 -5924 1517 185 3 35 chr4 88253221 88253508 -114074839 - AluJb SINE Alu -34 278 1 218 241 0 37 chr4 88253683 88253737 -114074610 - L2 LINE L2 -1 3312 3261 10540 93 5 1 chr4 88254611 88256066 -114072281 + L1P LINE L1 1426 2885 -3261 449 198 27 27 chr4 88256379 88256680 -114071667 + (TG)n Simple_repeat Simple_repeat 1 301 0 1324 167 78 0 chr4 88258226 88258471 -114069876 - AluJo SINE Alu -48 264 1 417 288 51 82 chr4 88259182 88259439 -114068908 - MIR SINE MIR -12 250 2 2029 110 0 50 chr4 88259713 88260074 -114068273 - AluSq SINE Alu 0 346 1 2506 83 0 6 chr4 88260485 88260798 -114067549 + AluSq SINE Alu 3 313 0 405 285 80 15 chr4 88261277 88261414 -114066933 - MIR SINE MIR -110 152 7 1783 241 38 83 chr4 88261417 88261919 -114066428 + MLT1H1 LTR MaLR 1 475 -80 189 74 0 0 chr4 88261919 88261946 -114066401 + (CCA)n Simple_repeat Simple_repeat 3 29 0 1783 241 38 83 chr4 88261946 88262020 -114066327 + MLT1H1 LTR MaLR 475 551 -4 619 264 63 42 chr4 88262303 88262542 -114065805 + L2 LINE L2 2289 2532 -782 2462 129 28 6 chr4 88262629 88262985 -114065362 - THE1B LTR MaLR 0 364 1 421 339 155 29 chr4 88263175 88263594 -114064753 + L3 LINE CR1 462 933 -644 805 289 154 30 chr4 88264146 88265044 -114063303 - L2 LINE L2 0 3313 2246 587 243 41 82 chr4 88265146 88265389 -114062958 - MLT1L LTR MaLR -368 247 15 265 269 87 29 chr4 88266551 88266655 -114061692 - L2 LINE L2 0 3313 3204 401 271 10 0 chr4 88266695 88266791 -114061556 - Zaphod DNA AcHobo 0 4031 3935 329 264 11 55 chr4 88267376 88267467 -114060880 - Zaphod DNA AcHobo -3934 97 11 231 375 0 0 chr4 88268479 88268551 -114059796 + MIR SINE MIR 49 120 -142 392 206 10 69 chr4 88269995 88270097 -114058250 + MLT1A1 LTR MaLR 1 96 -278 1150 198 108 74 chr4 88270099 88270478 -114057869 + MSTD LTR MaLR 5 396 0 * 1573 198 20 10 chr4 88270478 88270751 -114057596 + MLT1A1 LTR MaLR 90 365 0 23 0 0 0 chr4 88271260 88271283 -114057064 + AT_rich Low_complexity Low_complexity 1 23 0 401 278 139 0 chr4 88271757 88271872 -114056475 - L2 LINE L2 -20 3293 3163 434 245 71 41 chr4 88272029 88272225 -114056122 + L1M4b LINE L1 11 212 -6647 335 309 7 36 chr4 88272466 88272605 -114055742 + L1M4b LINE L1 877 1011 -5844 21760 130 16 5 chr4 88272716 88275782 -114052565 - L1PA8A LINE L1 -203 6243 3130 2175 92 0 36 chr4 88275782 88276087 -114052260 - AluY SINE Alu -17 294 1 21760 130 16 5 chr4 88276087 88277081 -114051266 - L1PA8A LINE L1 -3316 3130 2148 1225 75 7 0 chr4 88277081 88277228 -114051119 + AluSp SINE Alu 1 148 -165 4335 214 53 14 chr4 88277228 88278170 -114050177 - L1PA8A LINE L1 -4896 979 1 1471 257 158 34 chr4 88278330 88279196 -114049151 + L1M4b LINE L1 1216 2206 -4753 490 285 119 44 chr4 88279192 88279455 -114048892 + L1M4b LINE L1 2495 2805 -4333 * 8859 68 8 5 chr4 88279455 88280523 -114047824 + MER11C LTR ERVK 1 1071 0 490 285 119 44 chr4 88280523 88280694 -114047653 + L1M4b LINE L1 2805 2962 -4176 4336 255 44 15 chr4 88280694 88282638 -114045709 + L1PA13 LINE L1 1 2430 -4367 428 252 8 25 chr4 88282925 88283044 -114045303 + MLT1H LTR MaLR 433 549 0 2414 105 0 0 chr4 88283104 88283417 -114044930 - AluSp SINE Alu 0 313 1 2053 143 10 0 chr4 88283561 88283868 -114044479 - AluSx SINE Alu -2 310 1 22 35 0 0 chr4 88284396 88284425 -114043922 + AT_rich Low_complexity Low_complexity 1 29 0 862 78 0 0 chr4 88284432 88284535 -114043812 - U6 snRNA snRNA -4 103 1 369 305 72 34 chr4 88284823 88285059 -114043288 - L2 LINE L2 -193 3079 2835 2066 143 55 22 chr4 88286434 88286797 -114041550 + THE1C LTR MaLR 1 375 0 10319 110 36 18 chr4 88286801 88288343 -114040004 + THE1C-int LTR MaLR 6 1575 -5 2165 135 52 19 chr4 88288346 88288709 -114039638 + THE1C LTR MaLR 1 375 0 302 323 30 0 chr4 88288807 88288906 -114039441 + LTR16C LTR ERVL 152 253 -238 396 314 101 32 chr4 88289411 88289688 -114038659 + HERV16 LTR ERVL 361 656 -4340 291 368 29 32 chr4 88289709 88289986 -114038361 + HERV16 LTR ERVL 798 1073 -4691 315 370 58 0 chr4 88290419 88290557 -114037790 + HERV16 LTR ERVL 1506 1651 -4113 206 387 0 0 chr4 88290835 88290910 -114037437 + MER5A DNA MER1_type 1 75 -114 234 0 0 0 chr4 88291024 88291050 -114037297 + (GA)n Simple_repeat Simple_repeat 1 26 0 342 0 0 0 chr4 88291298 88291336 -114037011 + (TG)n Simple_repeat Simple_repeat 1 38 0 392 314 82 24 chr4 88291359 88291370 -114036977 + L1ME LINE L1 5423 5432 -689 1710 169 7 7 chr4 88291370 88291654 -114036693 - AluJo SINE Alu -28 284 1 392 314 82 24 chr4 88291654 88291897 -114036450 + L1ME LINE L1 5432 5692 -429 391 238 41 22 chr4 88291912 88292047 -114036300 - MIR SINE MIR -10 252 69 1421 177 17 0 chr4 88292694 88292926 -114035421 - MER46A DNA MER2_type 0 236 1 252 257 0 0 chr4 88293028 88293098 -114035249 + CT-rich Low_complexity Low_complexity 4 73 0 207 355 97 8 chr4 88294134 88294258 -114034089 + MIR SINE MIR 1 135 -127 378 0 0 0 chr4 88295358 88295400 -114032947 + (TG)n Simple_repeat Simple_repeat 1 42 0 249 33 0 0 chr4 88295399 88295429 -114032918 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 276 182 76 15 chr4 88295732 88295798 -114032549 + MLT1K LTR MaLR 511 580 -8 197 268 181 47 chr4 88296110 88296237 -114032110 + MIR SINE MIR 100 243 -19 403 248 19 0 chr4 88296283 88296388 -114031959 - MIR SINE MIR 0 262 156 285 221 0 15 chr4 88296593 88296661 -114031686 + Tigger1 DNA MER2_type 1 67 -2351 * 1361 136 5 0 chr4 88296659 88296865 -114031482 + Tigger1 DNA MER2_type 2212 2418 0 248 290 130 14 chr4 88296959 88297097 -114031250 - MIR3 SINE MIR 0 208 55 1955 161 0 0 chr4 88297128 88297432 -114030915 - AluJo SINE Alu -6 306 3 576 305 59 0 chr4 88298124 88298311 -114030036 - MIR SINE MIR -28 234 37 197 346 25 49 chr4 88298338 88298419 -114029928 + L3b LINE CR1 1468 1546 -37 * 212 282 149 69 chr4 88298417 88298605 -114029742 - MIR SINE MIR -55 207 5 871 203 5 39 chr4 88299720 88299927 -114028420 + Tigger6a DNA MER2_type 329 528 -555 261 208 69 0 chr4 88301626 88301698 -114026649 - HsTC2 DNA Tc2 -1821 77 1 257 267 168 0 chr4 88301919 88302020 -114026327 + MIR SINE MIR 137 254 -8 216 274 97 0 chr4 88302152 88302214 -114026133 + L2 LINE L2 3246 3313 0 305 231 129 95 chr4 88304401 88304548 -114023799 - MIR SINE MIR -12 250 99 1749 178 3 0 chr4 88304773 88305088 -114023259 + Tigger6a DNA MER2_type 2 317 -766 195 265 206 0 chr4 88305096 88305164 -114023183 - L2 LINE L2 -5 3267 3186 3090 197 54 23 chr4 88305197 88305932 -114022415 + Tigger6a DNA MER2_type 323 1080 -3 2854 67 3 13 chr4 88305942 88306328 -114022019 + L1PA6 LINE L1 5773 6154 0 2134 141 5 30 chr4 88306726 88307095 -114021252 + MER46B DNA MER2_type 1 235 -1 329 204 0 21 chr4 88309579 88309672 -114018675 + CT-rich Low_complexity Low_complexity 2 92 0 690 218 55 40 chr4 88310026 88310228 -114018119 + MER3 DNA MER1_type 1 205 -4 225 320 19 48 chr4 88310772 88310875 -114017472 + L2 LINE L2 2960 3059 -213 610 229 107 48 chr4 88310926 88311197 -114017150 + MLT1K LTR MaLR 302 588 0 235 235 74 12 chr4 88311197 88311278 -114017069 - L3 LINE CR1 -177 1400 1315 644 259 18 12 chr4 88311530 88311696 -114016651 + MIR SINE MIR 17 183 -79 697 179 0 0 chr4 88311965 88312071 -114016276 - FLAM_A SINE Alu -36 106 1 321 258 144 0 chr4 88312485 88312582 -114015765 + MIR SINE MIR 90 200 -62 1978 118 32 51 chr4 88313393 88313706 -114014641 + AluSq SINE Alu 1 307 -6 182 236 36 36 chr4 88314539 88314594 -114013753 - L2 LINE L2 -4 3309 3255 330 316 139 42 chr4 88316680 88316917 -114011430 - MIR SINE MIR 0 262 3 241 263 145 0 chr4 88318764 88318840 -114009507 + MIR3 SINE MIR 100 186 -22 2042 82 38 10 chr4 88318923 88319216 -114009131 + L1PA10 LINE L1 5867 6167 -1 204 330 124 21 chr4 88319532 88319629 -114008718 + L2 LINE L2 3112 3218 -54 541 308 56 28 chr4 88320582 88320832 -114007515 - LTR33 LTR ERVL -4 517 261 186 299 48 128 chr4 88320853 88321104 -114007243 + L2 LINE L2 2964 3194 -78 385 232 171 43 chr4 88321486 88321650 -114006697 + MIR SINE MIR 78 262 0 226 268 159 14 chr4 88321666 88321804 -114006543 + HAL1b LINE L1 1184 1341 -7 411 273 22 22 chr4 88321843 88321982 -114006365 + MIR SINE MIR 57 195 -67 224 222 19 0 chr4 88323070 88323124 -114005223 + C-rich Low_complexity Low_complexity 3 57 0 384 77 0 0 chr4 88324354 88324406 -114003941 + (TG)n Simple_repeat Simple_repeat 2 53 0 577 277 82 0 chr4 88325298 88325457 -114002890 + MIR SINE MIR 79 250 -12 238 273 55 55 chr4 88327364 88327474 -114000873 - MIR SINE MIR -77 185 76 476 346 33 16 chr4 88329207 88329389 -113998958 + MIR3 SINE MIR 16 200 -8 219 389 114 7 chr4 88330752 88330901 -113997446 - L2 LINE L2 -4 3268 3104 660 234 15 0 chr4 88330923 88331060 -113997287 - MIR SINE MIR -10 252 114 227 343 105 24 chr4 88331359 88331691 -113996656 - L2 LINE L2 -1172 2142 1784 204 231 264 0 chr4 88331975 88332066 -113996281 + MIR3 SINE MIR 92 206 -2 2868 140 12 19 chr4 88332197 88332684 -113995663 + L1PA16 LINE L1 5683 6166 0 180 83 62 21 chr4 88333302 88333350 -113994997 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 304 287 128 0 chr4 88333431 88333525 -113994822 - L2 LINE L2 -1 3312 3207 1078 168 40 29 chr4 88333615 88333889 -113994458 - L1MC3 LINE L1 -2 7783 7507 662 318 27 27 chr4 88333892 88334112 -113994235 - MIR SINE MIR -41 221 2 22 56 0 0 chr4 88334314 88334350 -113993997 + AT_rich Low_complexity Low_complexity 1 36 0 239 324 101 49 chr4 88334537 88334893 -113993454 + L2 LINE L2 2720 3100 -172 204 158 0 0 chr4 88335026 88335064 -113993283 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 345 339 71 0 chr4 88337166 88337278 -113991069 + L2 LINE L2 3136 3255 -17 1843 123 4 0 chr4 88337564 88337816 -113990531 - AluSx SINE Alu -14 298 46 822 201 10 25 chr4 88337924 88338123 -113990224 - MLT1B LTR MaLR 0 390 195 8417 41 4 3 chr4 88338896 88339991 -113988356 - L1P LINE L1 -1461 4685 3590 7216 46 7 0 chr4 88339991 88341336 -113987011 + L1PA5 LINE L1 4796 6149 -5 2710 157 36 6 chr4 88341336 88341839 -113986508 + Tigger3(Golem) DNA MER2_type 2509 3026 -3 1113 169 103 66 chr4 88341955 88342381 -113985966 - LTR7 LTR ERV1 -8 442 1 189 94 0 0 chr4 88342918 88342950 -113985397 + (TA)n Simple_repeat Simple_repeat 2 33 0 26 30 0 0 chr4 88343265 88343298 -113985049 + AT_rich Low_complexity Low_complexity 1 33 0 565 324 53 31 chr4 88343338 88343700 -113984647 - L2 LINE L2 -1231 2083 1184 1761 178 0 7 chr4 88344157 88344443 -113983904 - AluSx SINE Alu -22 290 7 229 208 125 17 chr4 88344459 88344579 -113983768 - L1MC4 LINE L1 -5 8037 7905 1414 197 0 63 chr4 88344615 88344930 -113983417 - AluJo SINE Alu -11 301 7 1125 240 41 25 chr4 88344958 88345324 -113983023 - L1MC4 LINE L1 -140 7902 7531 2866 95 16 19 chr4 88345333 88345764 -113982583 - L1PA14 LINE L1 -3 6158 5729 207 362 9 9 chr4 88345942 88346047 -113982300 - MIR SINE MIR -111 151 47 23 0 0 0 chr4 88346230 88346253 -113982094 + AT_rich Low_complexity Low_complexity 1 23 0 3693 153 37 21 chr4 88346752 88347479 -113980868 + L1MB3 LINE L1 5444 6182 -1 309 228 89 81 chr4 88348431 88348554 -113979793 - MIR SINE MIR -92 170 47 250 297 141 55 chr4 88349289 88349417 -113978930 + MIR SINE MIR 68 206 -56 230 338 0 0 chr4 88349809 88349880 -113978467 + L2 LINE L2 3242 3312 -1 225 0 0 0 chr4 88349985 88350010 -113978337 + (GA)n Simple_repeat Simple_repeat 2 26 0 187 359 92 11 chr4 88352610 88352794 -113975553 - MIR SINE MIR -10 252 54 227 297 42 121 chr4 88354331 88354496 -113973851 - MER5A DNA MER1_type -1 188 37 647 155 68 20 chr4 88354528 88354676 -113973671 - MER53 DNA DNA -18 171 17 204 273 41 107 chr4 88355902 88356023 -113972324 - MIR SINE MIR -45 217 105 26 0 0 0 chr4 88356539 88356565 -113971782 + AT_rich Low_complexity Low_complexity 1 26 0 331 159 48 16 chr4 88359604 88359667 -113968680 - L2 LINE L2 0 3272 3208 182 229 131 16 chr4 88360288 88360349 -113967998 + MIR SINE MIR 123 190 -72 21 0 0 0 chr4 88360805 88360826 -113967521 + AT_rich Low_complexity Low_complexity 1 21 0 1707 137 93 3 chr4 88360826 88361126 -113967221 - L1PB4 LINE L1 -13 6143 5817 5474 193 6 33 chr4 88361126 88361427 -113966920 - L1PB4 LINE L1 -1064 5082 4774 1183 98 33 0 chr4 88361427 88361610 -113966737 - L1PB1 LINE L1 -7 6144 5956 5474 193 6 33 chr4 88361610 88362536 -113965811 - L1PB4 LINE L1 -1372 4774 3889 333 281 22 0 chr4 88362654 88362743 -113965604 - L1MC4 LINE L1 -1339 6703 6613 343 224 51 0 chr4 88362743 88362841 -113965506 - L1MC4 LINE L1 -1326 6716 6614 199 291 139 51 chr4 88363780 88363938 -113964409 - MIR SINE MIR -69 193 22 261 278 0 89 chr4 88364143 88364233 -113964114 + L2 LINE L2 3191 3272 0 571 262 37 6 chr4 88364258 88364422 -113963925 + MIR SINE MIR 29 197 -65 955 266 63 8 chr4 88364695 88364932 -113963415 - MIR SINE MIR -1 261 12 380 252 39 0 chr4 88365462 88365565 -113962782 - L2 LINE L2 -8 3305 3199 221 260 0 0 chr4 88365590 88365640 -113962707 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 574 224 6 62 chr4 88365783 88365944 -113962403 - L1MA10 LINE L1 -14 6320 6169 1874 211 84 31 chr4 88365972 88366955 -113961392 - L1MEc LINE L1 -3429 2786 1789 6008 48 8 1 chr4 88367055 88368205 -113960142 - L1PA6 LINE L1 -161 5993 4840 2354 248 70 31 chr4 88368198 88369137 -113959210 - L1MEc LINE L1 -4628 1768 793 * 951 237 18 5 chr4 88369154 88369373 -113958974 - L1MEc LINE L1 -5685 711 490 319 381 142 22 chr4 88369374 88369642 -113958705 - L2 LINE L2 -75 3197 2898 332 288 14 0 chr4 88369729 88369802 -113958545 + MIR SINE MIR 8 81 -181 910 282 117 30 chr4 88369844 88370300 -113958047 - MLT1J LTR MaLR -9 502 1 230 300 156 11 chr4 88370300 88370390 -113957957 + MIR SINE MIR 158 260 -2 316 331 64 19 chr4 88371641 88371798 -113956549 + MIR3 SINE MIR 22 185 -23 21 0 0 0 chr4 88374365 88374386 -113953961 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 88374475 88374504 -113953843 + AT_rich Low_complexity Low_complexity 1 29 0 345 154 183 0 chr4 88374849 88374953 -113953394 - L1ME4a LINE L1 -1 6120 5998 499 262 103 33 chr4 88375015 88375287 -113953060 + L1ME3A LINE L1 5654 5939 -231 911 217 59 0 chr4 88375473 88375676 -113952671 - MER20 DNA MER1_type -3 216 2 287 218 26 51 chr4 88377933 88378011 -113950336 + L2 LINE L2 3151 3226 -46 1670 194 10 0 chr4 88378101 88378395 -113949952 - AluSx SINE Alu -15 297 1 560 250 174 0 chr4 88378461 88378645 -113949702 - MIR SINE MIR 0 262 47 206 176 20 0 chr4 88378774 88378825 -113949522 + CT-rich Low_complexity Low_complexity 2 53 0 301 286 111 8 chr4 88378900 88379026 -113949321 + MIR SINE MIR 110 248 -14 458 277 22 60 chr4 88379606 88379790 -113948557 - MER69A DNA AcHobo 0 177 1 226 299 82 41 chr4 88380113 88380210 -113948137 - MIR SINE MIR -157 105 5 290 303 45 0 chr4 88380315 88380406 -113947941 + MIR SINE MIR 66 160 -56 215 309 72 79 chr4 88381662 88381814 -113946533 + MIR SINE MIR 51 201 -61 8278 222 17 10 chr4 88382080 88384096 -113944251 + L1PA16 LINE L1 2788 4817 -1329 786 79 10 1 chr4 88384100 88384221 -113944126 + MSTA LTR MaLR 305 428 0 4727 232 50 25 chr4 88384221 88385305 -113943042 + L1MB8 LINE L1 2731 3865 -2281 1922 170 0 0 chr4 88385305 88385614 -113942733 + AluSx SINE Alu 1 309 0 4727 232 50 25 chr4 88385614 88386020 -113942327 + L1MB8 LINE L1 3865 4259 -1887 1135 231 23 23 chr4 88386135 88386395 -113941952 - MER76 LTR ERV -428 260 1 4161 204 46 14 chr4 88386396 88388217 -113940130 + L1MB8 LINE L1 4258 6123 -55 404 294 25 0 chr4 88389920 88390039 -113938308 - MIR SINE MIR -71 191 70 184 114 68 0 chr4 88390982 88391026 -113937321 + A-rich Low_complexity Low_complexity 5 51 0 586 211 26 0 chr4 88391097 88391264 -113937083 - MER63 DNA MER1_type 0 1688 31 425 295 36 0 chr4 88391410 88391522 -113936825 + L2 LINE L2 3198 3313 0 224 315 0 22 chr4 88394071 88394163 -113934184 + GA-rich Low_complexity Low_complexity 4 93 0 929 199 152 0 chr4 88394956 88395147 -113933200 - MER58A DNA MER1_type -4 220 1 664 213 64 0 chr4 88395796 88395937 -113932410 + L1PA16 LINE L1 4835 4984 -1162 5728 112 35 14 chr4 88396044 88397198 -113931149 + L1PA16 LINE L1 4987 6156 -10 186 43 0 0 chr4 88397234 88397257 -113931090 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 346 266 10 41 chr4 88398581 88398692 -113929655 - MIR SINE MIR -78 130 24 2031 118 35 0 chr4 88399521 88399810 -113928537 - AluSx SINE Alu -13 299 1 24 32 0 0 chr4 88399819 88399850 -113928497 + AT_rich Low_complexity Low_complexity 1 31 0 762 274 36 9 chr4 88399853 88400076 -113928271 - MIR SINE MIR -21 241 13 259 259 111 0 chr4 88401986 88402067 -113926280 - MIR3 SINE MIR -11 197 108 267 31 0 0 chr4 88402171 88402203 -113926144 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 698 260 191 28 chr4 88402206 88402525 -113925822 - L2 LINE L2 -27 3286 2916 4278 38 1 0 chr4 88403239 88403865 -113924482 - L1PA5 LINE L1 -668 5486 4860 5485 47 1 0 chr4 88403865 88404528 -113923819 + L1PA5 LINE L1 5481 6148 -6 27 0 0 0 chr4 88404528 88404555 -113923792 + AT_rich Low_complexity Low_complexity 1 27 0 1505 184 103 25 chr4 88404613 88404972 -113923375 + MLT1B LTR MaLR 4 390 0 241 280 107 0 chr4 88405205 88405280 -113923067 + MIR SINE MIR 65 147 -115 198 167 0 0 chr4 88407310 88407346 -113921001 + (TG)n Simple_repeat Simple_repeat 2 37 0 525 333 61 23 chr4 88408678 88408942 -113919405 - L2 LINE L2 -3 3269 2996 268 274 107 0 chr4 88409079 88409163 -113919184 - MLT1J LTR MaLR -182 329 237 253 328 55 8 chr4 88409233 88409361 -113918986 - L2 LINE L2 -481 2833 2700 1083 169 0 0 chr4 88409362 88409540 -113918807 - AluSg/x SINE Alu -3 307 130 276 30 0 0 chr4 88409540 88409573 -113918774 + (TG)n Simple_repeat Simple_repeat 2 34 0 2070 147 0 0 chr4 88409588 88409888 -113918459 - AluSg SINE Alu -10 300 1 356 307 76 64 chr4 88410720 88411284 -113917063 + L1MEd LINE L1 573 1143 -4976 267 137 0 0 chr4 88411567 88411618 -113916729 - L1MB7 LINE L1 -1 6183 6133 261 306 0 0 chr4 88411662 88411760 -113916587 - L1ME LINE L1 -422 5699 5602 * 5553 155 29 14 chr4 88411756 88413676 -113914671 - L1MA4A LINE L1 -3 7002 5060 * 42301 36 21 2 chr4 88413672 88419703 -113908644 - L1PA2 LINE L1 -3 6152 4 10064 195 20 8 chr4 88419702 88422070 -113906277 - L1MA4A LINE L1 -1775 5073 2675 * 5085 138 22 6 chr4 88422744 88423579 -113904768 + L1PB3 LINE L1 5307 6154 0 2387 147 8 5 chr4 88423773 88424160 -113904187 + MLT1B LTR MaLR 1 388 -2 441 255 117 7 chr4 88425174 88425319 -113903028 + MIR SINE MIR 13 173 -89 2191 116 10 3 chr4 88425415 88425717 -113902630 + AluSx SINE Alu 1 304 -8 6823 60 8 0 chr4 88426551 88427558 -113900789 - L1PA7 LINE L1 -1 6153 5154 22188 118 9 158 chr4 88427558 88429430 -113898917 - L1PA7 LINE L1 -1642 4504 2354 1214 158 53 0 chr4 88429430 88429620 -113898727 - AluSx SINE Alu -112 200 1 22188 118 9 158 chr4 88429620 88432843 -113895504 - L1PA7 LINE L1 -3792 2354 10 352 276 122 70 chr4 88434201 88434357 -113893990 + MIR3 SINE MIR 26 189 -19 22 56 0 0 chr4 88434506 88434542 -113893805 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 88434566 88434588 -113893759 + AT_rich Low_complexity Low_complexity 1 22 0 862 261 83 9 chr4 88435056 88435274 -113893073 + MIR SINE MIR 6 239 -23 263 274 217 19 chr4 88436097 88436203 -113892144 + MIR3 SINE MIR 43 169 -39 24 32 0 0 chr4 88436344 88436375 -113891972 + AT_rich Low_complexity Low_complexity 1 31 0 306 106 0 0 chr4 88436897 88436944 -113891403 + (TG)n Simple_repeat Simple_repeat 2 48 0 22 0 0 0 chr4 88437034 88437056 -113891291 + AT_rich Low_complexity Low_complexity 1 22 0 2277 117 7 0 chr4 88437419 88437728 -113890619 - AluSx SINE Alu -1 311 1 187 254 109 0 chr4 88438240 88438295 -113890052 + L3 LINE CR1 1213 1273 -304 526 298 29 42 chr4 88438596 88438798 -113889549 + MIR SINE MIR 34 235 -27 466 339 94 24 chr4 88438921 88439304 -113889043 - L2 LINE L2 -37 3235 2826 187 292 0 21 chr4 88439967 88440015 -113888332 + L2 LINE L2 3252 3298 -15 189 0 0 0 chr4 88440017 88440038 -113888309 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 319 217 17 58 chr4 88440253 88440373 -113887974 - MER113 DNA MER1_type? -401 120 6 385 258 82 90 chr4 88440713 88440843 -113887504 + MIR SINE MIR 20 149 -113 2460 64 0 0 chr4 88440843 88441155 -113887192 + L1PB1 LINE L1 5840 6151 0 385 258 82 90 chr4 88441155 88441257 -113887090 + MIR SINE MIR 149 250 -12 26 74 0 0 chr4 88441278 88441332 -113887015 + AT_rich Low_complexity Low_complexity 1 54 0 180 0 0 0 chr4 88441367 88441387 -113886960 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 685 125 42 0 chr4 88443494 88443614 -113884733 - L1MB1 LINE L1 -1 6167 6043 192 364 93 16 chr4 88443741 88443870 -113884477 + L2 LINE L2 3134 3272 0 629 263 170 17 chr4 88444204 88444571 -113883776 + LTR33 LTR ERVL 71 519 -2 249 128 0 0 chr4 88444633 88444680 -113883667 - LTR66 LTR ERVL -169 441 395 246 137 0 0 chr4 88444646 88444697 -113883650 + LTR66 LTR ERVL 395 445 -165 * 1462 157 0 0 chr4 88444776 88445011 -113883336 - L1PA15 LINE L1 -7 6158 5924 1233 112 0 16 chr4 88446147 88446335 -113882012 - L1PA13 LINE L1 -3 6160 5976 21 0 0 0 chr4 88446442 88446463 -113881884 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 88446712 88446735 -113881612 + AT_rich Low_complexity Low_complexity 1 23 0 195 250 192 0 chr4 88447012 88447064 -113881283 - L2 LINE L2 -33 3239 3178 504 236 64 0 chr4 88447241 88447351 -113880996 + L2 LINE L2 3156 3272 0 195 219 0 24 chr4 88447351 88447392 -113880955 + MIR SINE MIR 214 253 -9 * 262 204 0 0 chr4 88447358 88447407 -113880940 + L2 LINE L2 3224 3272 0 953 290 82 35 chr4 88447567 88447933 -113880414 + MLT1J2 LTR MaLR 1 383 -67 338 331 79 11 chr4 88447935 88448113 -113880234 + MIR SINE MIR 73 262 0 508 254 198 13 chr4 88449611 88449835 -113878512 - MIR SINE MIR -1 261 3 654 303 58 60 chr4 88451247 88451799 -113876548 + L2 LINE L2 2740 3268 -4 2086 56 4 0 chr4 88452482 88452748 -113875599 - L1PA7 LINE L1 -1 6153 5887 21 82 0 0 chr4 88452793 88452842 -113875505 + AT_rich Low_complexity Low_complexity 1 49 0 12643 220 38 19 chr4 88452910 88455188 -113873159 - L1PB4 LINE L1 -10 6203 3969 2590 109 5 8 chr4 88455188 88455564 -113872783 + THE1C LTR MaLR 1 375 0 12643 220 38 19 chr4 88455564 88455992 -113872355 - L1PB4 LINE L1 -2244 3969 3551 1980 113 99 41 chr4 88455992 88456336 -113872011 - THE1B LTR MaLR 0 364 1 12643 220 38 19 chr4 88456336 88458997 -113869350 - L1PB4 LINE L1 -2662 3551 705 463 324 29 25 chr4 88458999 88459243 -113869104 - L1PA15-16 LINE L1 -5296 1553 1309 481 323 117 0 chr4 88459827 88460050 -113868297 - MIR SINE MIR -11 251 3 211 274 167 0 chr4 88460103 88460187 -113868160 - L2 LINE L2 -211 3102 3005 21 0 0 0 chr4 88461464 88461485 -113866862 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr4 88461825 88461860 -113866487 + AT_rich Low_complexity Low_complexity 1 35 0 2668 176 72 32 chr4 88462202 88462857 -113865490 - Charlie1a DNA MER1_type -1 1454 774 2238 188 146 20 chr4 88462881 88463435 -113864912 - Charlie1a DNA MER1_type -831 624 1 242 228 0 0 chr4 88463555 88463612 -113864735 + (TA)n Simple_repeat Simple_repeat 1 57 0 310 238 58 13 chr4 88463657 88463775 -113864572 + L1MC4 LINE L1 7884 7995 0 761 231 115 0 chr4 88465693 88465875 -113862472 - MIR SINE MIR -57 205 3 424 271 75 0 chr4 88466447 88466580 -113861767 - MIR SINE MIR 0 262 120 605 249 141 64 chr4 88466681 88467210 -113861137 - L1MEc LINE L1 -4637 1759 1112 3329 132 27 11 chr4 88467210 88467770 -113860577 - L1PA14 LINE L1 -1 6160 5592 605 249 141 64 chr4 88467770 88468024 -113860323 - L1MEc LINE L1 -5284 1112 879 212 0 36 0 chr4 88468024 88468052 -113860295 + (TTG)n Simple_repeat Simple_repeat 2 30 0 758 157 8 8 chr4 88468058 88468179 -113860168 - FLAM_C SINE Alu -20 123 3 1249 350 34 20 chr4 88468179 88469013 -113859334 - L1MEc LINE L1 -5506 890 46 230 147 0 0 chr4 88469968 88470002 -113858345 - MLT1E1 LTR MaLR -618 36 3 216 67 0 0 chr4 88470050 88470080 -113858267 + (TG)n Simple_repeat Simple_repeat 1 30 0 771 163 0 39 chr4 88470109 88470238 -113858109 + FLAM_C SINE Alu 3 126 -7 2643 157 36 63 chr4 88475554 88476161 -113852186 - L1MB2 LINE L1 -5 6166 5576 278 267 27 13 chr4 88476483 88476558 -113851789 - MER5A DNA MER1_type -58 131 56 1880 174 0 0 chr4 88478065 88478363 -113849984 + AluJb SINE Alu 1 298 -14 676 281 102 40 chr4 88478483 88478835 -113849512 - L2 LINE L2 -20 3293 2920 647 174 8 15 chr4 88478844 88478976 -113849371 + AluY SINE Alu 177 307 -4 191 239 0 43 chr4 88479336 88479382 -113848965 + L2 LINE L2 3237 3280 -33 440 290 11 0 chr4 88480389 88480482 -113847865 - L2 LINE L2 0 3272 3179 1615 193 117 24 chr4 88480592 88480730 -113847617 - MLT1C LTR MaLR -1 466 342 2785 89 11 0 chr4 88480730 88481101 -113847246 - THE1C LTR MaLR 0 375 1 1615 193 117 24 chr4 88481101 88481388 -113846959 - MLT1C LTR MaLR -125 342 1 24 0 0 0 chr4 88481831 88481855 -113846492 + AT_rich Low_complexity Low_complexity 1 24 0 214 300 99 73 chr4 88482262 88482495 -113845852 + MIR SINE MIR 5 243 -19 264 328 164 9 chr4 88483430 88483546 -113844801 - MIR3 SINE MIR -66 142 9 192 40 0 0 chr4 88483642 88483667 -113844680 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 1150 295 52 26 chr4 88483667 88484435 -113843912 - L2 LINE L2 -28 3285 2502 21 71 0 0 chr4 88486541 88486583 -113841764 + AT_rich Low_complexity Low_complexity 1 42 0 268 319 0 0 chr4 88486669 88486738 -113841609 + L1MC4a LINE L1 5568 5636 -2172 28 0 0 0 chr4 88486738 88486766 -113841581 + AT_rich Low_complexity Low_complexity 1 28 0 2392 80 0 6 chr4 88486771 88487082 -113841265 - AluY SINE Alu -2 309 1 395 307 213 10 chr4 88487084 88487286 -113841061 + L1MC4a LINE L1 5626 5868 -1940 290 45 23 0 chr4 88488346 88488390 -113839957 + (TG)n Simple_repeat Simple_repeat 2 46 0 1389 140 28 4 chr4 88488996 88489246 -113839101 + L1MA2 LINE L1 6049 6304 0 1657 187 0 10 chr4 88490096 88490385 -113837962 - AluJb SINE Alu -25 287 2 332 273 55 76 chr4 88491290 88491449 -113836898 + L1 LINE L1 4151 4303 -1843 180 0 0 0 chr4 88491449 88491469 -113836878 + (CA)n Simple_repeat Simple_repeat 1 20 0 332 273 55 76 chr4 88491469 88491598 -113836749 + L1 LINE L1 4303 4433 -1713 2794 260 59 14 chr4 88491646 88492423 -113835924 - MER69 DNA AcHobo -1585 941 130 266 286 119 12 chr4 88493154 88493238 -113835109 + L2 LINE L2 3177 3269 -3 1143 73 0 0 chr4 88493473 88493624 -113834723 + L1PA8 LINE L1 6019 6169 -3 21 0 0 0 chr4 88493630 88493651 -113834696 + AT_rich Low_complexity Low_complexity 1 21 0 417 260 83 21 chr4 88493755 88493917 -113834430 - MLT1H LTR MaLR -233 176 37 3528 204 70 59 chr4 88494301 88495352 -113832995 - L1MC4 LINE L1 0 8042 6980 602 297 105 26 chr4 88495539 88495768 -113832579 - MIR SINE MIR -13 249 3 480 361 64 5 chr4 88495887 88496106 -113832241 + MIR SINE MIR 15 246 -16 436 212 89 34 chr4 88497395 88497541 -113830806 + MER103 DNA DNA 3 156 -10 180 274 132 9 chr4 88497994 88498100 -113830247 + L2 LINE L2 2833 2951 -363 718 188 227 5 chr4 88498271 88498478 -113829869 - L1ME1 LINE L1 -5 6161 5909 267 218 27 73 chr4 88498498 88498608 -113829739 - L1MEc LINE L1 -3479 2736 2632 1114 264 114 9 chr4 88498635 88499180 -113829167 - L1MEc LINE L1 -3675 2540 1974 2434 255 49 57 chr4 88499322 88499496 -113828851 + L1ME LINE L1 491 665 -5865 1147 200 19 19 chr4 88499496 88499766 -113828581 - L1PB4 LINE L1 0 6156 5887 2434 255 49 57 chr4 88499766 88500727 -113827620 + L1ME LINE L1 665 1549 -4981 1155 236 36 96 chr4 88500770 88501409 -113826938 + L1ME LINE L1 2111 2683 -3857 2286 121 0 0 chr4 88501409 88501714 -113826633 + AluSx SINE Alu 3 307 -5 1155 236 36 96 chr4 88501714 88501849 -113826498 + L1ME LINE L1 2683 2825 -3715 2262 109 6 3 chr4 88501854 88502165 -113826182 + AluSp SINE Alu 1 312 -1 567 301 96 17 chr4 88503195 88503434 -113824913 + MIR SINE MIR 2 259 -3 260 296 68 63 chr4 88503481 88503687 -113824660 + MIR SINE MIR 56 262 0 367 253 23 0 chr4 88503738 88503825 -113824522 + L2 LINE L2 3221 3309 -4 1156 204 150 63 chr4 88503929 88504493 -113823854 - MLT1E2 LTR MaLR 0 626 1 2081 101 37 14 chr4 88506412 88506709 -113821638 + AluSp SINE Alu 1 304 -9 1307 234 71 53 chr4 88506858 88507294 -113821053 - MLT1J1 LTR MaLR 0 446 3 32 0 0 0 chr4 88508811 88508843 -113819504 + AT_rich Low_complexity Low_complexity 1 32 0 380 141 16 84 chr4 88508843 88509034 -113819313 + (TAA)n Simple_repeat Simple_repeat 1 178 0 200 35 35 0 chr4 88509438 88509467 -113818880 + (TAGA)n Simple_repeat Simple_repeat 1 30 0 184 152 30 0 chr4 88509685 88509718 -113818629 + L3 LINE CR1 1541 1574 -3 * 224 309 10 52 chr4 88509709 88509806 -113818541 + MIR SINE MIR 49 141 -67 211 215 51 38 chr4 88511226 88511305 -113817042 - MIR SINE MIR 0 262 183 2033 112 3 17 chr4 88511742 88512062 -113816285 - AluSx SINE Alu 0 312 1 2565 52 0 0 chr4 88512071 88512376 -113815971 - AluY SINE Alu -6 305 1 546 225 19 19 chr4 88513686 88513844 -113814503 + MIR SINE MIR 106 262 0 29 28 0 0 chr4 88513858 88513894 -113814453 + AT_rich Low_complexity Low_complexity 1 36 0 329 43 21 0 chr4 88516391 88516438 -113811909 + (TC)n Simple_repeat Simple_repeat 2 49 0 22 35 0 0 chr4 88518268 88518297 -113810050 + GC_rich Low_complexity Low_complexity 1 29 0 2475 45 7 19 chr4 88518903 88519213 -113809134 + AluSq SINE Alu 1 306 -7 1225 49 7 0 chr4 88521625 88521769 -113806578 + AluSp SINE Alu 5 149 -164 608 48 12 0 chr4 88521981 88522065 -113806282 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 241 82 41 0 chr4 88522799 88522848 -113805499 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 819 225 50 12 chr4 88523367 88523733 -113804614 - MLT1F LTR MaLR -1 541 5 213 39 0 0 chr4 88523887 88523913 -113804434 + (CTG)n Simple_repeat Simple_repeat 1 26 0 * 237 132 0 0 chr4 88523911 88523949 -113804398 + (ATG)n Simple_repeat Simple_repeat 1 38 0 492 170 106 0 chr4 88523964 88524058 -113804289 - MIR SINE MIR -24 238 135 432 37 0 0 chr4 88525616 88525670 -113802677 + (TG)n Simple_repeat Simple_repeat 2 55 0 402 21 0 0 chr4 88526062 88526109 -113802238 + (CA)n Simple_repeat Simple_repeat 1 47 0 212 167 21 0 chr4 88526876 88526924 -113801423 + (CTA)n Simple_repeat Simple_repeat 1 49 0 464 179 36 14 chr4 88527169 88527309 -113801038 + GA-rich Low_complexity Low_complexity 4 146 0 189 0 0 0 chr4 88531963 88531984 -113796363 + (TG)n Simple_repeat Simple_repeat 1 21 0 380 275 122 96 chr4 88533824 88534601 -113793746 - L1M2 LINE L1 -5447 1402 468 21 57 0 0 chr4 88535773 88535808 -113792539 + GC_rich Low_complexity Low_complexity 1 35 0 427 216 100 100 chr4 88540746 88540996 -113787351 - L1ME4a LINE L1 0 6121 5872 846 201 91 10 chr4 88541255 88541454 -113786893 - MIR SINE MIR -44 218 4 51 61 0 17 chr4 88541711 88541788 -113786559 + AT_rich Low_complexity Low_complexity 1 77 -36 1591 194 7 10 chr4 88541788 88542076 -113786271 + AluJo SINE Alu 1 287 -25 51 61 0 17 chr4 88542076 88542113 -113786234 + AT_rich Low_complexity Low_complexity 77 113 0 2303 218 124 19 chr4 88542912 88543591 -113784756 - MER20B DNA MER1_type -1 782 33 277 239 43 11 chr4 88543654 88543746 -113784601 - MIR SINE MIR -50 212 118 1108 187 15 10 chr4 88543908 88544111 -113784236 - MER3 DNA MER1_type -5 204 1 204 125 0 0 chr4 88544194 88544226 -113784121 + (CA)n Simple_repeat Simple_repeat 2 33 0 317 385 37 0 chr4 88544301 88544410 -113783937 + L2 LINE L2 3122 3234 -38 32 0 0 0 chr4 88546068 88546100 -113782247 + AT_rich Low_complexity Low_complexity 1 32 0 187 298 0 21 chr4 88546324 88546371 -113781976 + MIR3 SINE MIR 14 59 -149 2691 154 29 42 chr4 88546405 88546931 -113781416 + L1MB8 LINE L1 5659 6177 -1 218 191 0 0 chr4 88548737 88548784 -113779563 + (TG)n Simple_repeat Simple_repeat 2 48 0 2221 102 0 7 chr4 88550630 88550924 -113777423 + AluSq SINE Alu 1 292 -21 331 267 0 53 chr4 88552140 88552203 -113776144 + MER112 DNA MER1_type 137 191 -69 1554 179 24 93 chr4 88552203 88552622 -113775725 + MLT1B LTR MaLR 1 390 0 331 267 0 53 chr4 88552622 88552689 -113775658 + MER112 DNA MER1_type 191 260 0 546 250 159 14 chr4 88552700 88552908 -113775439 - L3 LINE CR1 -80 1497 1260 2146 124 3 10 chr4 88553116 88553415 -113774932 - AluSx SINE Alu -15 297 1 572 302 92 78 chr4 88553837 88554374 -113773973 + L2 LINE L2 2136 2664 -608 752 291 100 39 chr4 88554374 88554866 -113773481 - LTR33A LTR ERVL 0 523 2 572 302 92 78 chr4 88554866 88555467 -113772880 + L2 LINE L2 2664 3272 0 29 47 0 0 chr4 88555761 88555804 -113772543 + AT_rich Low_complexity Low_complexity 1 43 0 2422 222 89 33 chr4 88555832 88556111 -113772236 + Charlie1a DNA MER1_type 1 263 -2498 2481 67 0 7 chr4 88556111 88556410 -113771937 + AluY SINE Alu 1 297 -14 2422 222 89 33 chr4 88556410 88556818 -113771529 + Charlie1a DNA MER1_type 263 726 -729 1987 191 6 65 chr4 88556827 88557350 -113770997 - MLT1D LTR MaLR -13 492 1 3243 159 40 19 chr4 88557350 88558069 -113770278 + Charlie1a DNA MER1_type 721 1454 -1 317 267 44 44 chr4 88558719 88558854 -113769493 + MIR SINE MIR 78 212 -50 3196 252 101 56 chr4 88559180 88559248 -113769099 - L2 LINE L2 -2 3311 3247 184 57 29 29 chr4 88559248 88559283 -113769064 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 3196 252 101 56 chr4 88559283 88559742 -113768605 - L2 LINE L2 -66 3247 2810 11701 25 0 2 chr4 88559742 88561886 -113766461 + L1PA4 LINE L1 4015 6155 0 3196 252 101 56 chr4 88561886 88561955 -113766392 - L2 LINE L2 -503 2810 2746 2191 128 0 19 chr4 88561955 88562274 -113766073 + AluSq SINE Alu 1 313 0 3196 252 101 56 chr4 88562274 88563219 -113765128 - L2 LINE L2 -567 2746 1696 1065 190 29 66 chr4 88563804 88564214 -113764133 - L1MC5 LINE L1 -25 7936 7542 21 0 0 0 chr4 88564347 88564368 -113763979 + AT_rich Low_complexity Low_complexity 1 21 0 229 266 160 30 chr4 88564820 88564989 -113763358 - MIR3 SINE MIR -2 206 16 1283 213 17 0 chr4 88565089 88565324 -113763023 + MER8 DNA MER2_type 1 239 0 670 286 87 0 chr4 88566004 88566245 -113762102 - MIR SINE MIR 0 262 1 2031 269 45 54 chr4 88566448 88567459 -113760888 + L1MC4 LINE L1 6839 7840 -202 611 167 0 0 chr4 88567459 88567555 -113760792 + AluJ/FLAM SINE Alu 1 96 -216 819 157 0 0 chr4 88567555 88567689 -113760658 + AluJo/FRAM SINE Alu 179 312 0 216 67 0 0 chr4 88567751 88567781 -113760566 + (TG)n Simple_repeat Simple_repeat 1 30 0 622 132 90 49 chr4 88567781 88567925 -113760422 + L1MB2 LINE L1 6015 6164 -7 285 271 25 49 chr4 88567951 88568073 -113760274 + L1MC4 LINE L1 7922 8040 -2 1646 178 15 0 chr4 88568347 88568617 -113759730 - AluJo SINE Alu -38 274 1 220 173 0 39 chr4 88568841 88568893 -113759454 + GA-rich Low_complexity Low_complexity 2 51 0 221 353 106 12 chr4 88569016 88569186 -113759161 - MIR SINE MIR -57 205 20 7006 168 7 3 chr4 88569216 88570669 -113757678 + L1P4 LINE L1 4026 5485 -689 1596 117 4 9 chr4 88570669 88570899 -113757448 + AluSg SINE Alu 1 229 -81 288 173 0 0 chr4 88570999 88571051 -113757296 + Alu SINE Alu 244 295 -5 1977 103 22 0 chr4 88571053 88571326 -113757021 + AluSx SINE Alu 1 279 -33 426 20 0 0 chr4 88571326 88571377 -113756970 + (CATA)n Simple_repeat Simple_repeat 1 51 0 21 0 0 0 chr4 88571627 88571648 -113756699 + AT_rich Low_complexity Low_complexity 1 21 0 12067 104 8 38 chr4 88572059 88574283 -113754064 + L1P3 LINE L1 9 2234 -4227 792 301 38 13 chr4 88574392 88574631 -113753716 + MIR SINE MIR 18 262 0 249 282 47 24 chr4 88574769 88574854 -113753493 - MER5A DNA MER1_type -34 155 69 626 279 60 15 chr4 88575151 88575416 -113752931 - L1MC/D LINE L1 -2193 5615 5339 1808 142 13 82 chr4 88576624 88576828 -113751519 + MLT2D LTR ERVL 2 168 -246 2203 117 0 16 chr4 88576828 88577144 -113751203 + AluSx SINE Alu 1 311 -1 1808 142 13 82 chr4 88577144 88577327 -113751020 + MLT2D LTR ERVL 168 362 -52 21748 171 19 28 chr4 88577339 88579091 -113749256 + L1PA11 LINE L1 9 1776 -5836 2546 113 3 19 chr4 88579091 88579461 -113748886 - THE1B LTR MaLR 0 364 1 21748 171 19 28 chr4 88579461 88582049 -113746298 + L1PA11 LINE L1 1776 4386 -3226 1987 144 7 0 chr4 88582049 88582333 -113746014 + AluSx SINE Alu 4 289 -23 21748 171 19 28 chr4 88582333 88583590 -113744757 + L1PA11 LINE L1 4386 5653 -1959 2152 121 3 0 chr4 88583590 88583880 -113744467 + AluSx SINE Alu 1 291 -21 21748 171 19 28 chr4 88583880 88584589 -113743758 + L1PA11 LINE L1 5653 7611 -1 278 88 0 4 chr4 88584626 88584638 -113743709 + MLT2B2 LTR ERVL 476 487 -28 285 98 0 0 chr4 88584638 88584679 -113743668 + (CA)n Simple_repeat Simple_repeat 1 41 0 278 88 0 4 chr4 88584679 88584719 -113743628 + MLT2B2 LTR ERVL 487 515 0 230 232 29 43 chr4 88585496 88585565 -113742782 - MIR SINE MIR -63 145 78 2057 92 98 0 chr4 88585627 88585943 -113742404 - L1PA10 LINE L1 0 6168 5822 357 59 0 0 chr4 88585944 88585995 -113742352 + L1PA7 LINE L1 6102 6152 -2 924 102 18 24 chr4 88585995 88586161 -113742186 + L1MC/D LINE L1 5323 5487 -846 316 319 48 60 chr4 88586326 88586393 -113741954 - MIR SINE MIR -87 175 109 962 200 5 5 chr4 88586393 88586598 -113741749 - MER3 DNA MER1_type 0 209 5 316 319 48 60 chr4 88586598 88586696 -113741651 - MIR SINE MIR -153 109 12 358 167 131 0 chr4 88586911 88586995 -113741352 + MER94 DNA DNA 5 99 -35 2250 99 0 0 chr4 88587194 88587486 -113740861 + AluSg SINE Alu 1 292 -18 393 268 0 0 chr4 88587616 88587698 -113740649 + MIR SINE MIR 60 141 -121 1087 193 143 0 chr4 88587724 88587983 -113740364 + AluJo SINE Alu 5 300 -2 801 183 85 0 chr4 88587986 88588139 -113740208 + AluJo/FRAM SINE Alu 137 302 0 235 222 19 0 chr4 88588163 88588217 -113740130 - MLT1F1 LTR MaLR -91 476 422 * 1164 230 42 42 chr4 88588208 88588569 -113739778 + MSTB1 LTR MaLR 72 432 0 353 340 68 6 chr4 88588754 88588916 -113739431 + MIR SINE MIR 21 192 -70 1859 198 30 5 chr4 88589451 88589855 -113738492 + L1MC1 LINE L1 5915 6328 -5 394 183 92 72 chr4 88589884 88590037 -113738310 - L1MC5 LINE L1 -44 7917 7762 2301 77 3 0 chr4 88590637 88590974 -113737373 - L1P LINE L1 -2230 3916 3579 218 250 23 0 chr4 88591398 88591442 -113736905 + L2 LINE L2 3154 3198 -74 632 245 87 29 chr4 88591457 88591665 -113736682 + MIR SINE MIR 18 237 -25 2042 138 0 3 chr4 88591987 88592278 -113736069 + AluSx SINE Alu 1 290 -22 1648 213 37 3 chr4 88592552 88592905 -113735442 - MLT1A1 LTR MaLR 0 365 1 232 158 0 0 chr4 88593164 88593202 -113735145 - MER53 DNA DNA 0 189 152 1824 203 21 113 chr4 88593202 88593876 -113734471 - LTR9 LTR ERV1 0 612 1 689 182 0 19 chr4 88593876 88594034 -113734313 - MER53 DNA DNA -34 155 1 2297 130 49 34 chr4 88594465 88594772 -113733575 + L1MA8 LINE L1 5620 5938 -353 1747 181 0 38 chr4 88594772 88595086 -113733261 + AluSx SINE Alu 1 302 -10 2297 130 49 34 chr4 88595086 88595225 -113733122 + L1MA8 LINE L1 5938 6073 -218 297 385 10 19 chr4 88595302 88595406 -113732941 + MIR SINE MIR 24 126 -136 295 325 40 8 chr4 88595588 88595714 -113732633 + MIR SINE MIR 74 203 -59 258 340 72 70 chr4 88595746 88596263 -113732084 + L2 LINE L2 1993 2510 -804 740 270 43 19 chr4 88596702 88596913 -113731434 + MIR SINE MIR 25 240 -22 2178 130 3 0 chr4 88597098 88597398 -113730949 + AluSp SINE Alu 1 301 -12 1748 219 36 47 chr4 88597400 88597949 -113730398 + L1ME3 LINE L1 5618 6160 -2 1078 255 125 0 chr4 88598208 88598537 -113729810 + L2 LINE L2 2379 2748 -566 859 117 39 0 chr4 88598538 88598666 -113729681 + FLAM_C SINE Alu 1 133 -10 1322 255 21 84 chr4 88598668 88599293 -113729054 + L2 LINE L2 2735 3313 0 21 71 0 0 chr4 88599388 88599430 -113728917 + AT_rich Low_complexity Low_complexity 1 42 0 272 233 250 8 chr4 88599897 88600093 -113728254 + MIR SINE MIR 8 243 -19 211 357 52 19 chr4 88600106 88600260 -113728087 + L2 LINE L2 2364 2522 -792 983 248 14 22 chr4 88600296 88600574 -113727773 + MLT1A2 LTR MaLR 88 363 -11 1911 205 60 11 chr4 88600590 88601138 -113727209 + MLT1A2-int LTR MaLR 5 669 -702 329 222 49 0 chr4 88601131 88601212 -113727135 + MLT1A2-int LTR MaLR 803 887 -484 * 1427 180 37 116 chr4 88601429 88601604 -113726743 + MLT1A2 LTR MaLR 1 166 -208 204 135 0 0 chr4 88601604 88601641 -113726706 + (TC)n Simple_repeat Simple_repeat 2 38 0 1427 180 37 116 chr4 88601641 88601835 -113726512 + MLT1A2 LTR MaLR 166 374 0 408 265 156 45 chr4 88602191 88602613 -113725734 + L1ME4a LINE L1 5549 6017 -104 294 159 95 16 chr4 88602744 88602807 -113725540 + L2 LINE L2 3238 3305 -8 352 250 8 8 chr4 88602860 88602980 -113725367 - LTR37B LTR ERV1 -5 463 344 255 143 67 193 chr4 88603008 88603127 -113725220 - LTR37A LTR ERV1 -240 186 83 1032 165 6 18 chr4 88603143 88603313 -113725034 + FAM SINE Alu 1 168 -7 1520 153 48 0 chr4 88603448 88603514 -113724833 + AluJo SINE Alu 53 114 -198 189 0 0 0 chr4 88603514 88603535 -113724812 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1520 153 48 0 chr4 88603535 88603716 -113724631 + AluJo SINE Alu 114 312 0 385 245 22 22 chr4 88604715 88604854 -113723493 - MER104 DNA Tc2 -26 154 16 345 277 0 11 chr4 88605216 88605310 -113723037 + LTR67 LTR ERVL 438 530 -27 405 102 0 0 chr4 88605449 88605508 -113722839 + (TA)n Simple_repeat Simple_repeat 1 59 0 771 240 149 5 chr4 88606005 88606213 -113722134 - MIR SINE MIR 0 262 25 297 272 9 44 chr4 88606384 88606498 -113721849 + MIR SINE MIR 112 221 -41 1949 150 0 22 chr4 88607286 88607600 -113720747 - AluJo SINE Alu -5 307 1 248 254 0 0 chr4 88607807 88607870 -113720477 + A-rich Low_complexity Low_complexity 1 63 0 1243 148 284 0 chr4 88608065 88608336 -113720011 + MER7A DNA MER2_type 1 346 0 417 242 159 0 chr4 88608875 88609007 -113719340 - MIR3 SINE MIR -23 185 33 206 225 0 0 chr4 88609514 88609554 -113718793 + CT-rich Low_complexity Low_complexity 2 41 0 24 53 0 0 chr4 88610372 88610410 -113717937 + GC_rich Low_complexity Low_complexity 1 38 0 308 217 130 0 chr4 88611875 88611944 -113716403 - MIR SINE MIR -95 113 36 3544 104 19 23 chr4 88613564 88614093 -113714254 - MER1A DNA MER1_type 0 527 1 196 266 73 46 chr4 88614212 88614321 -113714026 - L2 LINE L2 -1537 1777 1666 202 224 0 0 chr4 88614603 88614652 -113713695 + (TA)n Simple_repeat Simple_repeat 1 49 0 797 156 56 34 chr4 88615036 88615215 -113713132 - LTR49 LTR ERV1 0 595 413 * 2177 76 7 3 chr4 88615214 88615516 -113712831 - LTR49 LTR ERV1 -292 303 1 756 255 27 11 chr4 88615746 88615786 -113712561 - L1MD3 LINE L1 0 7995 7957 3021 186 40 44 chr4 88615786 88616513 -113711834 - LTR8A LTR ERV1 0 727 4 756 255 27 11 chr4 88616513 88616735 -113711612 - L1MD3 LINE L1 -38 7957 7729 1271 202 102 42 chr4 88617079 88617211 -113711136 - MER110A LTR ERV1 0 468 345 2243 75 0 4 chr4 88617211 88617512 -113710835 - AluY SINE Alu 0 300 1 1271 202 102 42 chr4 88617512 88617809 -113710538 - MER110A LTR ERV1 -123 345 12 1094 219 60 62 chr4 88617978 88618449 -113709898 - LTR56 LTR ERV1 0 437 11 2188 119 0 28 chr4 88619556 88619874 -113708473 - AluSx SINE Alu -3 309 1 1801 131 88 25 chr4 88620781 88620899 -113707448 - LTR23 LTR ERV1 -6 461 352 2293 105 7 0 chr4 88620899 88621204 -113707143 - AluSx SINE Alu -5 307 1 1801 131 88 25 chr4 88621204 88621481 -113706866 - LTR23 LTR ERV1 -115 352 1 263 141 203 0 chr4 88621503 88621567 -113706780 - MER34 LTR ERV1 0 542 466 854 224 143 16 chr4 88621691 88622012 -113706335 - MER34C LTR ERV1 -221 364 3 1291 155 0 10 chr4 88622181 88622388 -113705959 - AluJo SINE Alu -75 237 33 1139 195 32 106 chr4 88622391 88622797 -113705550 - MER72 LTR ERV1 -346 376 1 876 158 22 114 chr4 88622797 88623015 -113705332 + MER2 DNA MER2_type 149 345 0 2074 171 44 42 chr4 88623639 88624118 -113704229 - MLT1D LTR MaLR -5 500 21 1750 135 43 7 chr4 88624761 88625042 -113703305 + AluJo SINE Alu 5 295 -17 2594 55 0 0 chr4 88625246 88625555 -113702792 + AluY SINE Alu 1 309 -2 390 93 0 27 chr4 88625814 88625889 -113702458 - L1PA6 LINE L1 0 6154 6082 27 49 0 0 chr4 88626017 88626058 -113702289 + AT_rich Low_complexity Low_complexity 1 41 0 576 223 18 0 chr4 88626059 88626171 -113702176 - FLAM_A SINE Alu -19 114 1 412 158 0 0 chr4 88626189 88626265 -113702082 - L1MA5 LINE L1 -17 6283 6208 326 297 0 36 chr4 88626386 88626421 -113701926 - L1MA10 LINE L1 -19 6315 6281 830 256 113 26 chr4 88626430 88626774 -113701573 - MLT1A2 LTR MaLR 0 374 1 2557 223 95 27 chr4 88626774 88626807 -113701540 - L1ME1 LINE L1 -52 6114 6085 414 0 0 0 chr4 88626807 88626853 -113701494 + (TA)n Simple_repeat Simple_repeat 2 47 0 2557 223 95 27 chr4 88626853 88628227 -113700120 - L1ME1 LINE L1 -81 6085 4600 191 316 51 66 chr4 88628230 88628288 -113700059 - L2 LINE L2 -713 2601 2544 2089 143 0 13 chr4 88628288 88628603 -113699744 + AluJo SINE Alu 1 311 -1 191 316 51 66 chr4 88628603 88628876 -113699471 - L2 LINE L2 -770 2544 2275 2116 107 0 0 chr4 88629035 88629316 -113699031 + AluSx SINE Alu 4 284 -28 411 83 0 0 chr4 88629316 88629376 -113698971 + (CATA)n Simple_repeat Simple_repeat 2 61 0 431 271 13 80 chr4 88629830 88629981 -113698366 - MIR3 SINE MIR -50 158 18 234 304 54 11 chr4 88630519 88630611 -113697736 - MIR SINE MIR -62 146 51 334 287 61 26 chr4 88631961 88632076 -113696271 - MIR SINE MIR -130 132 14 759 206 0 20 chr4 88632173 88632319 -113696028 - FLAM_C SINE Alu 0 143 1 572 276 33 29 chr4 88632570 88632813 -113695534 + MER112 DNA MER1_type 17 260 0 632 303 154 0 chr4 88633170 88633391 -113694956 - MIR SINE MIR -2 260 6 351 96 0 0 chr4 88633707 88633759 -113694588 + (TG)n Simple_repeat Simple_repeat 2 53 0 475 288 31 22 chr4 88633849 88634071 -113694276 - L1ME4a LINE L1 -280 5841 5618 1217 194 0 0 chr4 88634091 88634282 -113694065 - AluJb SINE Alu -21 291 101 803 125 0 17 chr4 88634689 88634809 -113693538 - AluJb SINE Alu -18 294 177 660 182 53 0 chr4 88634836 88634968 -113693379 - AluJb SINE Alu -117 195 57 862 119 0 0 chr4 88635015 88635133 -113693214 + FLAM_C SINE Alu 1 118 -15 2481 44 0 3 chr4 88635582 88635875 -113692472 - AluY SINE Alu -19 292 1 2560 60 0 10 chr4 88636298 88636612 -113691735 + AluY SINE Alu 1 311 0 993 166 33 47 chr4 88638319 88638530 -113689817 + AluJb SINE Alu 87 294 -18 189 291 43 151 chr4 88638579 88638837 -113689510 - L2 LINE L2 -94 3178 2949 468 320 51 79 chr4 88638993 88639146 -113689201 - L2 LINE L2 0 3272 3116 1420 183 122 10 chr4 88639146 88639458 -113688889 + MER7A DNA MER2_type 1 345 -1 468 320 51 79 chr4 88639458 88639660 -113688687 - L2 LINE L2 -156 3116 2927 2099 136 10 3 chr4 88641149 88641451 -113686896 + AluSx SINE Alu 1 304 -8 212 189 0 0 chr4 88641505 88641542 -113686805 + (TA)n Simple_repeat Simple_repeat 2 38 0 2231 119 0 3 chr4 88641767 88642069 -113686278 + AluSx SINE Alu 1 301 -11 732 178 0 47 chr4 88642571 88642700 -113685647 + FLAM_A SINE Alu 1 123 -10 364 292 25 56 chr4 88642836 88642997 -113685350 - L1ME LINE L1 -336 5785 5630 1919 186 27 63 chr4 88643102 88643580 -113684767 - MER65C LTR ERV1 0 461 1 522 184 114 25 chr4 88644909 88645067 -113683280 - MER58C DNA MER1_type 0 215 44 21 82 0 0 chr4 88646544 88646593 -113681754 + AT_rich Low_complexity Low_complexity 1 49 0 393 143 0 31 chr4 88647429 88647527 -113680820 + (CA)n Simple_repeat Simple_repeat 1 95 0 1230 134 6 0 chr4 88648191 88648362 -113679985 + AluSp SINE Alu 1 172 -141 973 191 0 5 chr4 88648463 88648672 -113679675 - AluY SINE Alu -103 208 1 21 0 0 0 chr4 88648741 88648762 -113679585 + AT_rich Low_complexity Low_complexity 1 21 0 304 204 57 87 chr4 88648864 88648929 -113679418 + MIR SINE MIR 37 102 -160 2344 95 3 0 chr4 88648929 88649235 -113679112 + AluSp SINE Alu 1 307 -6 304 204 57 87 chr4 88649235 88649302 -113679045 + MIR SINE MIR 102 229 -33 830 147 0 0 chr4 88649748 88649877 -113678470 - FLAM_C SINE Alu -4 129 1 2072 115 0 14 chr4 88650457 88650765 -113677582 + AluSx SINE Alu 1 304 0 455 269 45 68 chr4 88651027 88651336 -113677011 - HAL1 LINE L1 -380 2127 1826 231 219 95 101 chr4 88651633 88651802 -113676545 - HAL1 LINE L1 -2301 206 39 2441 83 0 10 chr4 88652141 88652454 -113675893 + AluY SINE Alu 2 311 0 1984 158 0 0 chr4 88653019 88653311 -113675036 - AluSx SINE Alu -20 292 1 234 341 109 36 chr4 88653602 88653989 -113674358 - L2 LINE L2 -213 3059 2583 2406 90 3 0 chr4 88654036 88654347 -113674000 + AluSp SINE Alu 1 312 -1 622 172 80 0 chr4 88654442 88654593 -113673754 - L1MD1 LINE L1 -3 6239 6077 661 221 8 0 chr4 88654604 88654735 -113673612 - FLAM_A SINE Alu -1 132 1 189 298 83 0 chr4 88654894 88654978 -113673369 + L2 LINE L2 3180 3270 -2 26 0 0 0 chr4 88655747 88655773 -113672574 + AT_rich Low_complexity Low_complexity 1 26 0 268 262 180 8 chr4 88656447 88656569 -113671778 + L2 LINE L2 3159 3301 -12 1616 197 0 14 chr4 88656693 88656983 -113671364 - AluJo SINE Alu -24 288 3 22 56 0 0 chr4 88657400 88657436 -113670911 + AT_rich Low_complexity Low_complexity 1 36 0 1977 141 8 40 chr4 88657438 88657792 -113670555 - MER2 DNA MER2_type 0 344 2 194 128 26 0 chr4 88658392 88658431 -113669916 + CT-rich Low_complexity Low_complexity 1 40 0 859 199 12 6 chr4 88658809 88658970 -113669377 + FRAM SINE Alu 1 162 -4 603 224 15 88 chr4 88659367 88659572 -113668775 + MIR SINE MIR 72 261 -1 21 36 0 0 chr4 88659647 88659675 -113668672 + AT_rich Low_complexity Low_complexity 1 28 0 2025 130 0 3 chr4 88660991 88661276 -113667071 + AluJb SINE Alu 1 284 -28 23 92 0 0 chr4 88661730 88661795 -113666552 + AT_rich Low_complexity Low_complexity 1 65 0 25 31 0 0 chr4 88662391 88662423 -113665924 + AT_rich Low_complexity Low_complexity 1 32 0 213 139 0 0 chr4 88662798 88662841 -113665506 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr4 88663390 88663411 -113664936 + AT_rich Low_complexity Low_complexity 1 21 0 756 127 0 0 chr4 88663728 88663870 -113664477 + (TTCC)n Simple_repeat Simple_repeat 1 142 0 1877 176 0 3 chr4 88663899 88664205 -113664142 - AluJb SINE Alu -5 307 3 2180 125 0 6 chr4 88664662 88664975 -113663372 - AluSx SINE Alu -1 311 1 1943 122 191 6 chr4 88665439 88665800 -113662547 - MSTA LTR MaLR 0 428 1 207 0 0 0 chr4 88666998 88667021 -113661326 + (TA)n Simple_repeat Simple_repeat 2 24 0 314 259 47 12 chr4 88667290 88667375 -113660972 + MER5B DNA MER1_type 1 88 -90 246 33 100 0 chr4 88668276 88668336 -113660011 + (TA)n Simple_repeat Simple_repeat 1 66 0 233 28 83 0 chr4 88668943 88668979 -113659368 + T-rich Low_complexity Low_complexity 2 40 0 188 33 0 33 chr4 88669206 88669236 -113659111 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1779 152 40 0 chr4 88669240 88669516 -113658831 - AluSq SINE Alu -26 287 1 2099 117 10 3 chr4 88670196 88670495 -113657852 + AluSp SINE Alu 1 301 -12 24 32 0 0 chr4 88670789 88670820 -113657527 + AT_rich Low_complexity Low_complexity 1 31 0 797 250 18 35 chr4 88671693 88671921 -113656426 - MER58A DNA MER1_type 0 224 1 368 262 215 13 chr4 88672028 88672261 -113656086 - L2 LINE L2 -225 3088 2809 189 364 40 46 chr4 88672299 88672450 -113655897 - L2 LINE L2 -26 3246 3097 568 254 38 53 chr4 88673817 88674026 -113654321 - L2 LINE L2 0 3313 3108 1985 246 92 29 chr4 88674379 88675414 -113652933 - L1M4 LINE L1 -2897 3249 2150 228 306 28 28 chr4 88679761 88679869 -113648478 + L2 LINE L2 3139 3246 -26 1844 153 0 20 chr4 88681009 88681310 -113647037 - AluJb SINE Alu -1 311 17 258 77 0 0 chr4 88681528 88681567 -113646780 - L1MB7 LINE L1 -10 6174 6136 * 632 216 119 11 chr4 88681565 88681750 -113646597 - L1ME1 LINE L1 -86 6080 5876 1403 217 63 44 chr4 88681795 88681971 -113646376 - L1ME1 LINE L1 -407 5762 5591 2308 113 0 0 chr4 88681971 88682282 -113646065 + AluSx SINE Alu 2 312 0 1403 217 63 44 chr4 88682282 88682551 -113645796 - L1ME1 LINE L1 -578 5591 5295 1895 154 0 3 chr4 88682551 88682837 -113645510 - AluJb SINE Alu -27 285 1 1403 217 63 44 chr4 88682837 88683017 -113645330 - L1ME1 LINE L1 -874 5295 5120 2516 198 46 14 chr4 88684364 88684900 -113643447 + L1MB7 LINE L1 5530 6047 -137 2721 70 6 8 chr4 88684900 88685256 -113643091 - THE1A LTR MaLR 0 355 1 11761 84 6 9 chr4 88685256 88685562 -113642785 - THE1A-int LTR MaLR 0 1580 1275 2267 121 0 3 chr4 88685562 88685869 -113642478 - AluSq SINE Alu -7 306 1 11761 84 6 9 chr4 88685869 88687147 -113641200 - THE1A-int LTR MaLR -305 1275 1 2667 80 11 0 chr4 88687147 88687498 -113640849 - THE1A LTR MaLR 0 355 1 2516 198 46 14 chr4 88687498 88687585 -113640762 + L1MB7 LINE L1 6046 6175 -9 1754 148 48 3 chr4 88687954 88688245 -113640102 + AluJb SINE Alu 1 304 -8 805 283 111 19 chr4 88688384 88688752 -113639595 - L2 LINE L2 -2 3311 2910 504 297 93 16 chr4 88690195 88690377 -113637970 - MIR SINE MIR -31 231 36 3274 187 109 49 chr4 88690731 88691711 -113636636 + Charlie1a DNA MER1_type 1 1039 -416 5247 148 20 3 chr4 88691716 88692686 -113635661 + L1MA3 LINE L1 4045 5030 -1116 5984 112 173 98 chr4 88692686 88694263 -113634084 + pTR5 LTR ERV1 743 2438 0 6053 135 14 10 chr4 88694265 88695535 -113632812 + L1MA3 LINE L1 5026 6301 -4 354 173 40 0 chr4 88695535 88695610 -113632737 + Charlie1a DNA MER1_type 1030 1107 -348 1145 181 93 23 chr4 88695713 88695849 -113632498 + Charlie1a DNA MER1_type 1076 1201 -1560 2187 93 22 26 chr4 88695849 88696160 -113632187 - AluSx SINE Alu -2 310 1 1145 181 93 23 chr4 88696160 88696377 -113631970 + Charlie1a DNA MER1_type 1201 1454 -1 23 0 0 0 chr4 88696881 88696904 -113631443 + AT_rich Low_complexity Low_complexity 1 23 0 214 277 0 0 chr4 88698341 88698388 -113629959 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 206 62 31 0 chr4 88699635 88699667 -113628680 + (TA)n Simple_repeat Simple_repeat 1 33 0 21 36 0 0 chr4 88700448 88700476 -113627871 + AT_rich Low_complexity Low_complexity 1 28 0 791 186 0 0 chr4 88701938 88702067 -113626280 - FLAM_C SINE Alu -4 129 1 1630 189 0 3 chr4 88702442 88702727 -113625620 + AluJo SINE Alu 5 288 -24 2375 95 0 0 chr4 88702739 88703044 -113625303 + AluSg SINE Alu 1 305 -5 1948 108 54 14 chr4 88703197 88703475 -113624872 - AluSx SINE Alu -23 289 1 486 283 58 53 chr4 88703653 88703879 -113624468 - MIR SINE MIR -34 228 2 536 281 100 41 chr4 88704085 88704984 -113623363 + L1ME3 LINE L1 4918 5912 -250 2226 134 3 0 chr4 88705904 88706211 -113622136 + AluJb SINE Alu 5 312 0 248 260 0 0 chr4 88708045 88708122 -113620225 - L1MC4 LINE L1 -1339 6703 6627 2106 133 0 0 chr4 88708122 88708408 -113619939 - AluSg SINE Alu -24 286 1 920 193 0 17 chr4 88708495 88708676 -113619671 - FRAM SINE Alu -1 175 1 1653 155 47 19 chr4 88708825 88709147 -113619200 - MER2 DNA MER2_type -5 340 10 2028 138 14 7 chr4 88710923 88711219 -113617128 + AluSx SINE Alu 1 298 -14 300 240 30 10 chr4 88711223 88711323 -113617024 + MER103 DNA DNA 35 136 -30 209 352 0 0 chr4 88711528 88711582 -113616765 + L3b LINE CR1 1277 1330 -253 317 304 126 0 chr4 88713101 88713236 -113615111 - MIR SINE MIR -14 248 97 1834 103 0 26 chr4 88714281 88714580 -113613767 + AluY SINE Alu 39 311 0 2191 114 3 0 chr4 88715364 88715662 -113612685 - AluSx SINE Alu -13 299 1 1647 193 20 0 chr4 88715929 88716235 -113612112 - 7SLRNA srpRNA srpRNA -5 315 4 393 307 104 15 chr4 88717856 88718058 -113610289 + MIR SINE MIR 31 250 -12 209 222 0 0 chr4 88720907 88720952 -113607395 + A-rich Low_complexity Low_complexity 1 45 0 411 232 173 6 chr4 88721291 88721459 -113606888 - MIR SINE MIR -10 252 57 2365 81 3 3 chr4 88721835 88722133 -113606214 + AluSg SINE Alu 1 298 -12 847 153 8 0 chr4 88722870 88723001 -113605346 + FLAM_C SINE Alu 2 133 0 285 295 13 0 chr4 88723578 88723656 -113604691 + L2 LINE L2 2570 2648 -666 180 0 0 0 chr4 88723779 88723799 -113604548 + (GA)n Simple_repeat Simple_repeat 2 21 0 335 316 118 7 chr4 88723812 88723964 -113604383 + L2 LINE L2 2665 2833 -481 1507 151 63 25 chr4 88724547 88724864 -113603483 + MER44D DNA MER2_type 2 600 -9 373 237 26 83 chr4 88725303 88725459 -113602888 + MER103 DNA DNA 20 166 0 21 0 0 0 chr4 88726515 88726536 -113601811 + AT_rich Low_complexity Low_complexity 1 21 0 1590 179 50 0 chr4 88726536 88726816 -113601531 - AluJo SINE Alu -18 294 1 1883 148 22 0 chr4 88726933 88727233 -113601114 - AluSx SINE Alu 0 306 1 4397 187 25 7 chr4 88727297 88728438 -113599909 - L1MB5 LINE L1 0 6174 5012 2100 139 3 0 chr4 88728448 88728749 -113599598 - AluJb SINE Alu -10 302 1 1700 133 30 53 chr4 88729066 88729367 -113598980 + AluSx SINE Alu 1 294 -18 1215 113 6 0 chr4 88730260 88730428 -113597919 - AluSg/x SINE Alu -18 292 124 2421 58 7 3 chr4 88731060 88731370 -113596977 + AluY SINE Alu 1 311 0 1332 273 34 43 chr4 88731665 88732237 -113596110 + L2 LINE L2 2748 3313 0 180 320 100 10 chr4 88734620 88734720 -113593627 - L2 LINE L2 -5 3308 3200 1810 163 30 0 chr4 88735174 88735475 -113592872 - AluJb SINE Alu -2 310 1 298 296 179 55 chr4 88735475 88735860 -113592487 - L2 LINE L2 -566 2748 2316 1589 195 0 13 chr4 88736779 88737082 -113591265 - AluJb SINE Alu -9 303 5 740 238 23 69 chr4 88737688 88737949 -113590398 - MER112 DNA MER1_type -11 249 1 1910 124 18 3 chr4 88737961 88738267 -113590080 - AluSx SINE Alu 0 312 1 708 183 0 0 chr4 88738298 88738413 -113589934 - FLAM_C SINE Alu -16 127 13 275 226 66 0 chr4 88739662 88739768 -113588579 + L1ME LINE L1 5316 5428 -2380 29 28 0 0 chr4 88739778 88739814 -113588533 + AT_rich Low_complexity Low_complexity 1 36 0 2253 96 0 0 chr4 88739816 88740108 -113588239 + AluSg SINE Alu 1 292 -18 334 357 99 0 chr4 88740113 88740284 -113588063 + L1ME LINE L1 5483 5670 -451 1350 157 29 120 chr4 88740287 88740637 -113587710 + AluYb8 SINE Alu 1 318 0 2039 109 23 17 chr4 88740685 88740987 -113587360 + AluSx SINE Alu 2 305 -7 2238 110 3 0 chr4 88742082 88742373 -113585974 + AluSc SINE Alu 1 292 -17 1489 196 54 11 chr4 88742382 88742658 -113585689 - AluJb SINE Alu -24 288 1 22 56 0 0 chr4 88742676 88742712 -113585635 + AT_rich Low_complexity Low_complexity 1 36 0 2449 80 0 13 chr4 88742910 88743224 -113585123 + AluY SINE Alu 1 310 -1 21 0 0 0 chr4 88743407 88743428 -113584919 + AT_rich Low_complexity Low_complexity 1 21 0 2548 62 0 3 chr4 88743738 88744047 -113584300 + AluY SINE Alu 1 308 -3 42 20 0 0 chr4 88744155 88744204 -113584143 + AT_rich Low_complexity Low_complexity 1 49 0 2357 73 3 10 chr4 88744401 88744703 -113583644 + AluY SINE Alu 1 300 -11 2475 67 0 10 chr4 88744760 88745074 -113583273 + AluY SINE Alu 1 311 0 749 177 124 5 chr4 88745483 88745692 -113582655 - ORSL DNA AcHobo 0 275 42 2436 47 0 33 chr4 88746028 88746329 -113582018 + AluY SINE Alu 17 307 -4 23 54 0 0 chr4 88746391 88746428 -113581919 + AT_rich Low_complexity Low_complexity 1 37 0 296 269 235 0 chr4 88747258 88747377 -113580970 + MIR SINE MIR 59 205 -57 230 160 20 0 chr4 88747892 88747942 -113580405 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 459 254 29 7 chr4 88747942 88748080 -113580267 - L1ME3A LINE L1 -24 6146 6006 332 319 70 95 chr4 88748322 88748563 -113579784 - L2 LINE L2 0 3272 3038 1119 172 24 4 chr4 88748679 88749053 -113579294 + MSTB LTR MaLR 1 426 0 265 213 49 0 chr4 88749982 88750043 -113578304 + MIR SINE MIR 86 149 -113 234 0 0 0 chr4 88750081 88750107 -113578240 + (CAA)n Simple_repeat Simple_repeat 2 27 0 395 247 11 11 chr4 88750120 88750213 -113578134 + MIR SINE MIR 154 246 -16 2227 120 3 0 chr4 88750351 88750651 -113577696 + AluSx SINE Alu 1 301 -11 32 67 0 0 chr4 88751631 88751691 -113576656 + AT_rich Low_complexity Low_complexity 1 60 0 253 108 0 0 chr4 88752334 88752371 -113575976 + MER4D LTR ERV1 792 828 -75 23 0 0 0 chr4 88753916 88753939 -113574408 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 88754611 88754639 -113573708 + AT_rich Low_complexity Low_complexity 1 28 0 273 219 0 0 chr4 88756300 88756371 -113571976 + L1ME2 LINE L1 6092 6162 0 218 56 28 0 chr4 88756451 88756487 -113571860 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1775 154 10 7 chr4 88756494 88756793 -113571554 + AluJo SINE Alu 3 302 -10 30 0 0 0 chr4 88757459 88757489 -113570858 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr4 88757730 88757769 -113570578 + AT_rich Low_complexity Low_complexity 1 39 0 680 196 7 78 chr4 88758303 88758486 -113569861 + MER69A DNA AcHobo 1 171 -6 441 298 43 50 chr4 88758738 88758928 -113569419 + MIR SINE MIR 42 225 -37 1373 117 39 39 chr4 88758928 88759052 -113569295 + MER30 DNA MER1_type 1 127 -103 2271 80 14 0 chr4 88759052 88759340 -113569007 - AluSp SINE Alu -20 293 2 1373 117 39 39 chr4 88759340 88759445 -113568902 + MER30 DNA MER1_type 126 230 0 441 298 43 50 chr4 88759445 88759477 -113568870 + MIR SINE MIR 225 256 -6 2618 162 45 11 chr4 88760506 88761043 -113567304 - L1MA7 LINE L1 -2 6289 5735 747 293 34 25 chr4 88761205 88761444 -113566903 - MIR SINE MIR -21 241 1 1016 253 56 11 chr4 88763645 88763914 -113564433 + LTR16A LTR ERVL 165 445 -5 21 0 0 0 chr4 88764100 88764121 -113564226 + AT_rich Low_complexity Low_complexity 1 21 0 772 258 119 13 chr4 88764848 88765150 -113563197 - MER46C DNA MER2_type -4 334 1 21 0 0 0 chr4 88765238 88765259 -113563088 + AT_rich Low_complexity Low_complexity 1 21 0 219 114 0 0 chr4 88765616 88765651 -113562696 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 298 281 62 38 chr4 88766074 88766234 -113562113 + MER5A DNA MER1_type 22 185 -4 * 728 204 25 6 chr4 88766092 88766249 -113562098 - MER5A DNA MER1_type -26 163 4 1858 168 0 16 chr4 88766559 88766862 -113561485 + AluSx SINE Alu 1 298 -14 249 370 141 16 chr4 88767707 88768075 -113560272 + L2 LINE L2 2858 3271 -1 235 364 80 50 chr4 88768718 88768957 -113559390 - L2 LINE L2 -2 3270 3025 2155 128 0 0 chr4 88769561 88769859 -113558488 - AluSx SINE Alu -14 298 1 1340 180 137 13 chr4 88770788 88771088 -113557259 + MER1B DNA MER1_type 1 337 0 892 221 93 32 chr4 88771569 88771849 -113556498 + L1ME3A LINE L1 5602 5898 -272 21 82 0 0 chr4 88772119 88772168 -113556179 + AT_rich Low_complexity Low_complexity 1 49 0 276 163 47 12 chr4 88772301 88772387 -113555960 + (TTATA)n Simple_repeat Simple_repeat 5 93 0 222 182 91 18 chr4 88772330 88772440 -113555907 + (TATAA)n Simple_repeat Simple_repeat 5 122 0 * 407 235 82 0 chr4 88772709 88772807 -113555540 + FLAM_A SINE Alu 18 123 -19 2826 3 0 0 chr4 88772816 88773125 -113555222 + AluYa5 SINE Alu 1 309 -2 1545 192 7 36 chr4 88774270 88774572 -113553775 + AluJb SINE Alu 1 293 -19 24 0 0 0 chr4 88774715 88774739 -113553608 + AT_rich Low_complexity Low_complexity 1 24 0 449 270 172 23 chr4 88774979 88775194 -113553153 - MIR SINE MIR -13 249 3 2344 98 0 6 chr4 88775808 88776126 -113552221 + THE1C LTR MaLR 10 325 -50 36 40 0 0 chr4 88776126 88776176 -113552171 + AT_rich Low_complexity Low_complexity 1 50 0 385 119 0 45 chr4 88776176 88776243 -113552104 + THE1C LTR MaLR 311 374 -1 387 264 92 37 chr4 88776475 88776638 -113551709 - MIR SINE MIR -13 249 78 315 322 125 13 chr4 88776692 88776844 -113551503 - MIR SINE MIR -73 189 21 1495 165 36 63 chr4 88777131 88777434 -113550913 - AluJb SINE Alu -17 295 1 21 36 0 0 chr4 88777539 88777567 -113550780 + AT_rich Low_complexity Low_complexity 1 28 0 1276 156 5 9 chr4 88777707 88777918 -113550429 + MER6B DNA MER2_type 1 210 0 1222 171 28 0 chr4 88779278 88779494 -113548853 + MER58A DNA MER1_type 2 223 -1 2012 108 0 51 chr4 88780476 88780790 -113547557 + AluSq SINE Alu 1 298 -15 23 0 0 0 chr4 88781561 88781584 -113546763 + AT_rich Low_complexity Low_complexity 1 23 0 192 188 0 116 chr4 88782498 88782567 -113545780 + MIR SINE MIR 92 152 -110 795 241 89 25 chr4 88783107 88783344 -113545003 - MIR SINE MIR -2 260 9 1955 145 0 0 chr4 88784547 88784878 -113543469 + AluSx SINE Alu 1 331 0 1002 181 0 6 chr4 88785817 88785988 -113542359 - AluSg/x SINE Alu -17 293 124 1506 178 25 25 chr4 88786505 88786781 -113541566 - AluJo SINE Alu -35 277 2 22 0 0 0 chr4 88786951 88786973 -113541374 + AT_rich Low_complexity Low_complexity 1 22 0 22441 28 0 0 chr4 88787087 88789791 -113538556 - L1PA3 LINE L1 -1042 5104 2401 7701 24 0 0 chr4 88789791 88790861 -113537486 + L1PA3 LINE L1 5086 6155 0 634 173 0 0 chr4 88791092 88791196 -113537151 + FLAM_A SINE Alu 28 131 -11 2773 63 0 8 chr4 88791428 88791792 -113536555 + L1PA8 LINE L1 5806 6166 -6 2298 53 17 30 chr4 88792815 88793117 -113535230 + AluY SINE Alu 1 298 -13 456 265 65 23 chr4 88793553 88793739 -113534608 + MIR SINE MIR 2 262 0 14296 130 18 39 chr4 88795266 88796039 -113532308 + Tigger1 DNA MER2_type 30 818 -1600 1615 188 13 3 chr4 88796039 88796348 -113531999 + AluJo SINE Alu 1 312 0 14296 130 18 39 chr4 88796348 88797632 -113530715 + Tigger1 DNA MER2_type 818 2128 -290 2394 49 0 26 chr4 88797632 88797957 -113530390 - AluY SINE Alu 0 311 1 14296 130 18 39 chr4 88797957 88797970 -113530377 + Tigger1 DNA MER2_type 2128 2140 -278 690 140 26 0 chr4 88797970 88798084 -113530263 - L1MA5 LINE L1 -5 6295 6179 14296 130 18 39 chr4 88798084 88798269 -113530078 + Tigger1 DNA MER2_type 2140 2234 -184 2348 61 3 3 chr4 88798269 88798563 -113529784 - AluY SINE Alu -17 294 1 14296 130 18 39 chr4 88798563 88798744 -113529603 + Tigger1 DNA MER2_type 2234 2417 -1 1702 202 0 7 chr4 88799371 88799673 -113528674 - AluJb SINE Alu -12 300 1 26 0 0 0 chr4 88800420 88800446 -113527901 + AT_rich Low_complexity Low_complexity 1 26 0 2174 124 18 12 chr4 88800596 88800927 -113527420 + MER2 DNA MER2_type 2 334 -11 375 263 254 44 chr4 88801051 88801256 -113527091 + MIR SINE MIR 12 259 -3 218 361 48 0 chr4 88801324 88801407 -113526940 + MIR SINE MIR 28 114 -94 184 330 102 0 chr4 88802978 88803066 -113525281 + MIR SINE MIR 77 173 -89 2269 83 7 3 chr4 88803197 88803497 -113524850 - AluSq SINE Alu -12 301 1 1070 262 76 21 chr4 88804745 88805256 -113523091 + L1MEc LINE L1 844 1235 -4982 1040 253 105 32 chr4 88805246 88805756 -113522591 + L1M2 LINE L1 1543 2076 -4253 * 266 324 65 88 chr4 88806024 88806240 -113522107 + L2 LINE L2 3060 3270 -2 267 382 0 11 chr4 88807192 88807281 -113521066 - L2 LINE L2 -33 3239 3152 459 87 0 0 chr4 88808186 88808255 -113520092 + (CA)n Simple_repeat Simple_repeat 2 70 0 235 289 74 8 chr4 88808565 88808686 -113519661 - L1ME LINE L1 -301 5820 5692 1269 104 35 0 chr4 88808900 88809073 -113519274 - AluSg/x SINE Alu -16 296 118 2094 103 0 24 chr4 88809954 88810274 -113518073 + AluSg SINE Alu 1 313 0 932 161 49 6 chr4 88810865 88811027 -113517320 - FRAM SINE Alu -7 169 1 364 341 66 12 chr4 88811039 88811228 -113517119 - MIR3 SINE MIR -60 202 5 2662 106 8 0 chr4 88811848 88812234 -113516113 - L1PA8 LINE L1 -1 6171 5783 1043 190 69 40 chr4 88812695 88812942 -113515405 + AluJo SINE Alu 7 260 -52 354 45 0 0 chr4 88813333 88813377 -113514970 + (CA)n Simple_repeat Simple_repeat 1 44 0 2579 280 123 30 chr4 88813377 88814033 -113514314 + L2 LINE L2 1772 2365 -948 2232 116 0 0 chr4 88814033 88814327 -113514020 + AluSq SINE Alu 1 294 -19 339 25 0 0 chr4 88814330 88814370 -113513977 + (TA)n Simple_repeat Simple_repeat 1 40 0 303 28 0 0 chr4 88814369 88814405 -113513942 + (CA)n Simple_repeat Simple_repeat 2 37 0 * 2579 280 123 30 chr4 88814370 88815153 -113513194 + L2 LINE L2 2366 3299 -14 762 206 93 109 chr4 88816054 88816302 -113512045 + MIR SINE MIR 19 262 0 351 0 0 0 chr4 88817282 88817321 -113511026 + (A)n Simple_repeat Simple_repeat 1 39 0 25 31 0 0 chr4 88817324 88817356 -113510991 + AT_rich Low_complexity Low_complexity 1 32 0 2113 114 7 14 chr4 88817633 88817930 -113510417 + AluSx SINE Alu 1 295 -17 180 0 0 0 chr4 88818660 88818680 -113509667 + (T)n Simple_repeat Simple_repeat 1 20 0 549 279 151 0 chr4 88819007 88819186 -113509161 - HAL1 LINE L1 -636 1871 1666 1683 263 85 43 chr4 88819840 88820444 -113507903 - HAL1 LINE L1 -904 1603 911 2198 91 0 31 chr4 88820444 88820764 -113507583 - AluY SINE Alu 0 311 2 1683 263 85 43 chr4 88820764 88821188 -113507159 - HAL1 LINE L1 -1596 911 507 834 264 81 7 chr4 88821264 88821559 -113506788 - HAL1 LINE L1 -2129 378 62 294 288 45 0 chr4 88821881 88821992 -113506355 - L1MD3 LINE L1 -10 7985 7870 302 267 42 79 chr4 88822101 88822266 -113506081 + L2 LINE L2 3026 3184 -129 1433 122 12 35 chr4 88822648 88822902 -113505445 - L1MB1 LINE L1 0 6168 5921 1501 179 39 59 chr4 88824543 88824850 -113503497 + AluJb SINE Alu 1 301 -11 598 309 21 5 chr4 88825038 88825226 -113503121 + MIR SINE MIR 58 248 -14 1689 101 4 35 chr4 88825447 88825704 -113502643 - AluY SINE Alu -8 303 55 2326 94 0 0 chr4 88825757 88826055 -113502292 - AluSx SINE Alu -14 298 1 231 246 58 94 chr4 88826602 88826740 -113501607 + L2 LINE L2 2909 3041 -231 1663 163 21 10 chr4 88827370 88827659 -113500688 + AluJo SINE Alu 1 292 -20 2372 88 0 16 chr4 88828357 88828674 -113499673 - AluSx SINE Alu 0 312 1 448 284 0 0 chr4 88828702 88828811 -113499536 - MER81 DNA DNA 0 114 6 26 88 0 0 chr4 88828976 88829044 -113499303 + AT_rich Low_complexity Low_complexity 1 68 0 483 321 10 20 chr4 88829881 88830077 -113498270 + MIR SINE MIR 69 262 0 278 325 97 0 chr4 88830320 88830434 -113497913 + L2 LINE L2 3147 3271 -1 298 346 38 8 chr4 88830735 88830868 -113497479 - MIR SINE MIR -55 207 71 32 43 0 0 chr4 88830911 88830957 -113497390 + AT_rich Low_complexity Low_complexity 1 46 0 1130 190 63 22 chr4 88831979 88832247 -113496100 + L1MB2 LINE L1 5891 6169 -2 295 192 135 29 chr4 88832292 88832396 -113495951 + MIR SINE MIR 121 235 -27 210 339 0 15 chr4 88832775 88832840 -113495507 - MIR SINE MIR -109 99 36 338 333 150 7 chr4 88833135 88833288 -113495059 - MIR3 SINE MIR -9 199 25 1930 126 10 17 chr4 88833593 88833886 -113494461 - AluSx SINE Alu -21 291 1 243 241 0 17 chr4 88833907 88833965 -113494382 + MIR3 SINE MIR 122 178 -30 426 88 0 0 chr4 88834499 88834567 -113493780 + (TTCTC)n Simple_repeat Simple_repeat 4 71 0 1803 155 79 3 chr4 88834567 88834857 -113493490 - AluJb SINE Alu 0 312 1 5773 139 19 13 chr4 88835611 88836652 -113491695 - L1MA5 LINE L1 -2 6298 5254 21 0 0 0 chr4 88836938 88836959 -113491388 + AT_rich Low_complexity Low_complexity 1 21 0 2298 90 3 3 chr4 88837044 88837344 -113491003 - AluSg1 SINE Alu -9 300 1 2120 160 14 3 chr4 88837684 88838046 -113490301 - MER47A DNA MER2_type 0 366 1 29 47 0 0 chr4 88838310 88838353 -113489994 + AT_rich Low_complexity Low_complexity 1 43 0 1519 80 10 25 chr4 88838400 88838640 -113489707 - AluSg/x SINE Alu 0 323 87 1452 171 25 8 chr4 88839391 88839630 -113488717 - AluJo SINE Alu -69 243 1 360 64 0 0 chr4 88840129 88840176 -113488171 + (TCCC)n Simple_repeat Simple_repeat 3 49 0 942 202 176 17 chr4 88840178 88840416 -113487931 - AluJo SINE Alu -36 276 1 332 279 61 12 chr4 88840533 88840698 -113487649 + L1ME LINE L1 5512 5684 -437 27 0 0 0 chr4 88841103 88841130 -113487217 + AT_rich Low_complexity Low_complexity 1 27 0 2311 209 146 16 chr4 88841776 88842422 -113485925 - MER44D DNA MER2_type -3 602 1 1875 170 0 3 chr4 88842781 88843075 -113485272 - AluJb SINE Alu -19 293 1 2198 82 0 24 chr4 88843198 88843490 -113484857 - AluSq SINE Alu -28 285 1 902 313 66 44 chr4 88843878 88844402 -113483945 - L2 LINE L2 -1 3312 2782 1898 155 3 10 chr4 88844644 88844948 -113483399 + AluSx SINE Alu 1 302 -10 382 322 133 17 chr4 88845099 88845332 -113483015 - MIR SINE MIR 0 262 3 21 36 0 0 chr4 88845409 88845437 -113482910 + AT_rich Low_complexity Low_complexity 1 28 0 25 75 0 0 chr4 88846998 88847051 -113481296 + AT_rich Low_complexity Low_complexity 1 53 0 227 231 39 92 chr4 88847676 88847806 -113480541 + L2 LINE L2 1289 1411 -1903 341 267 82 7 chr4 88848153 88848288 -113480059 - MIR SINE MIR 0 262 118 21 0 0 0 chr4 88848437 88848458 -113479889 + AT_rich Low_complexity Low_complexity 1 21 0 347 239 18 18 chr4 88848543 88848652 -113479695 + HAL1 LINE L1 1236 1344 -1163 202 180 33 0 chr4 88848872 88848933 -113479414 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 391 326 11 6 chr4 88848944 88849122 -113479225 + GA-rich Low_complexity Low_complexity 2 180 0 361 234 134 52 chr4 88849169 88849333 -113479014 + HAL1 LINE L1 2047 2243 -264 246 81 0 0 chr4 88849333 88849370 -113478977 + (TATG)n Simple_repeat Simple_repeat 3 39 0 361 234 134 52 chr4 88849370 88849474 -113478873 + HAL1 LINE L1 2243 2337 -170 226 169 31 31 chr4 88849521 88849586 -113478761 + HAL1 LINE L1 2443 2507 0 23 24 0 24 chr4 88849589 88849604 -113478743 + AT_rich Low_complexity Low_complexity 1 15 -25 2278 91 3 0 chr4 88849604 88849891 -113478456 - AluSq SINE Alu -25 288 1 23 24 0 24 chr4 88849891 88849916 -113478431 + AT_rich Low_complexity Low_complexity 15 40 0 1718 193 13 0 chr4 88850946 88851246 -113477101 + AluJb SINE Alu 2 305 -7 27 62 0 0 chr4 88851371 88851419 -113476928 + AT_rich Low_complexity Low_complexity 1 48 0 493 224 115 21 chr4 88851578 88851770 -113476577 - MER112 DNA MER1_type -37 223 14 1254 57 0 19 chr4 88852723 88852882 -113475465 + AluY SINE Alu 2 157 -154 3746 183 20 29 chr4 88852886 88854101 -113474246 - L1MA9 LINE L1 -319 5993 4619 2043 133 7 3 chr4 88854101 88854409 -113473938 + AluSx SINE Alu 1 309 -3 3746 183 20 29 chr4 88854409 88854657 -113473690 - L1MA9 LINE L1 -1693 4619 4370 199 293 134 24 chr4 88854667 88854749 -113473598 - MIR SINE MIR -86 122 32 1773 168 3 7 chr4 88854907 88855205 -113473142 - AluJo SINE Alu -15 297 1 1725 190 39 73 chr4 88855340 88855804 -113472543 + MER31B LTR ERV1 1 448 -18 1700 192 0 3 chr4 88855806 88856092 -113472255 + AluJb SINE Alu 3 287 -25 3658 122 55 18 chr4 88856272 88856888 -113471459 + MER51C LTR ERV1 1 639 -1 2393 77 0 13 chr4 88857906 88858218 -113470129 + AluSc SINE Alu 2 309 0 238 120 60 0 chr4 88859858 88859908 -113468439 + L1M3 LINE L1 5380 5432 -739 285 213 94 83 chr4 88860013 88860210 -113468137 + L1MC/D LINE L1 5640 5845 -316 1769 219 104 55 chr4 88860250 88860904 -113467443 + L1MCb LINE L1 5 690 -5355 * 2957 219 111 56 chr4 88860900 88861646 -113466701 + L1MCb LINE L1 1157 1860 -4704 1773 184 10 0 chr4 88861646 88861950 -113466397 - AluJb SINE Alu -5 307 1 2957 219 111 56 chr4 88861950 88862202 -113466145 + L1MCb LINE L1 1860 2096 -4468 2210 95 0 3 chr4 88862202 88862496 -113465851 + AluSc SINE Alu 2 294 -15 2957 219 111 56 chr4 88862496 88863685 -113464662 + L1MCb LINE L1 2096 3582 -2982 560 272 61 17 chr4 88863790 88863970 -113464377 + MIR SINE MIR 75 262 0 180 457 0 0 chr4 88864122 88864203 -113464144 - MIR SINE MIR -161 101 21 1268 164 151 4 chr4 88864787 88865025 -113463322 - AluJb SINE Alu -39 273 1 234 348 32 100 chr4 88865025 88865275 -113463072 + L2 LINE L2 3039 3271 -1 721 314 77 6 chr4 88865972 88866309 -113462038 + MARNA DNA Mariner 42 402 -184 234 374 51 35 chr4 88866393 88866647 -113461700 + L2 LINE L2 2661 2918 -396 910 278 97 17 chr4 88866925 88867035 -113461312 + L1ME LINE L1 5004 5104 -1058 204 40 0 0 chr4 88867035 88867060 -113461287 + (CA)n Simple_repeat Simple_repeat 2 26 0 910 278 97 17 chr4 88867060 88867362 -113460985 + L1ME LINE L1 5104 5381 -781 1926 187 136 11 chr4 88867362 88867811 -113460536 + MLT1D LTR MaLR 1 505 0 910 278 97 17 chr4 88867811 88868095 -113460252 + L1ME LINE L1 5381 5763 -399 483 18 0 0 chr4 88868097 88868153 -113460194 + (TA)n Simple_repeat Simple_repeat 2 57 0 1974 132 0 17 chr4 88868154 88868449 -113459898 - AluSx SINE Alu -22 290 1 198 336 76 42 chr4 88868849 88868968 -113459379 + L2 LINE L2 2922 3044 -228 1546 162 38 17 chr4 88869031 88869321 -113459026 + AluJo SINE Alu 1 296 -16 250 294 78 20 chr4 88869764 88869866 -113458481 + L2 LINE L2 3165 3272 0 25 51 0 0 chr4 88869931 88869970 -113458377 + AT_rich Low_complexity Low_complexity 1 39 0 1686 163 28 0 chr4 88870145 88870433 -113457914 - AluJo SINE Alu -16 296 1 23 0 0 0 chr4 88872082 88872105 -113456242 + AT_rich Low_complexity Low_complexity 1 23 0 247 296 81 46 chr4 88872105 88872412 -113455935 + L1MB1 LINE L1 4729 5046 -1100 2018 108 3 18 chr4 88872444 88872730 -113455617 - AluSx SINE Alu -29 283 2 333 0 0 0 chr4 88872757 88872794 -113455553 + (TG)n Simple_repeat Simple_repeat 2 38 0 255 279 134 48 chr4 88872978 88873247 -113455100 + L1ME LINE L1 5263 5554 -612 23 78 0 0 chr4 88873690 88873741 -113454606 + AT_rich Low_complexity Low_complexity 1 51 0 505 66 0 0 chr4 88873818 88873879 -113454468 - U6 snRNA snRNA -6 101 41 212 83 0 28 chr4 88874076 88874112 -113454235 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 221 347 65 24 chr4 88875076 88875200 -113453147 - MIR SINE MIR -114 148 20 28 0 0 0 chr4 88876129 88876157 -113452190 + AT_rich Low_complexity Low_complexity 1 28 0 2003 112 0 0 chr4 88876747 88877015 -113451332 + AluSx SINE Alu 28 295 -17 231 36 0 0 chr4 88877020 88877048 -113451299 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 342 0 0 0 chr4 88877615 88877653 -113450694 + (CA)n Simple_repeat Simple_repeat 2 39 0 230 67 0 0 chr4 88878001 88878031 -113450316 + LTR8 LTR ERV1 549 578 -113 2146 117 7 3 chr4 88878050 88878359 -113449988 + AluSx SINE Alu 1 310 -2 1885 190 48 5 chr4 88878566 88879499 -113448848 + L1MB1 LINE L1 5115 6109 -59 483 186 51 17 chr4 88881163 88881281 -113447066 - FRAM SINE Alu -14 162 41 211 334 119 56 chr4 88881308 88881685 -113446662 - L2 LINE L2 -967 2347 1947 22 0 0 0 chr4 88881945 88881967 -113446380 + AT_rich Low_complexity Low_complexity 1 22 0 223 161 36 107 chr4 88882125 88882181 -113446166 + L2 LINE L2 3211 3262 -10 23 0 0 0 chr4 88882754 88882777 -113445570 + AT_rich Low_complexity Low_complexity 1 23 0 225 209 15 30 chr4 88883237 88883304 -113445043 - L1ME2 LINE L1 -102 6062 5997 2144 125 0 0 chr4 88883464 88883767 -113444580 + AluSx SINE Alu 3 305 -7 27 49 0 0 chr4 88884014 88884055 -113444292 + AT_rich Low_complexity Low_complexity 1 41 0 889 208 36 0 chr4 88884059 88884227 -113444120 - MER58B DNA MER1_type -1 340 167 28 71 0 0 chr4 88884375 88884431 -113443916 + AT_rich Low_complexity Low_complexity 1 56 0 2132 36 44 11 chr4 88885540 88885853 -113442494 - AluY SINE Alu 0 322 1 443 342 93 29 chr4 88886608 88886994 -113441353 + L2 LINE L2 2474 2884 -430 1570 186 3 51 chr4 88887142 88887454 -113440893 - AluJo SINE Alu -15 297 1 1679 209 148 29 chr4 88888440 88888616 -113439731 + L1MD2 LINE L1 5760 5914 -445 2227 121 3 29 chr4 88888616 88888962 -113439385 - MER1B DNA MER1_type 0 337 1 1679 209 148 29 chr4 88888962 88889312 -113439035 + L1MD2 LINE L1 5914 6349 -10 2293 95 3 0 chr4 88889933 88890228 -113438119 - AluSq SINE Alu -16 297 2 2101 93 0 51 chr4 88890238 88890550 -113437797 - AluY SINE Alu -15 296 1 207 184 0 0 chr4 88891603 88891641 -113436706 + (TG)n Simple_repeat Simple_repeat 1 38 0 2265 136 6 3 chr4 88892925 88893285 -113435062 + MER46B DNA MER2_type 1 236 0 1837 124 10 21 chr4 88894601 88894892 -113433455 - AluSx SINE Alu -24 288 1 201 162 0 0 chr4 88895929 88895966 -113432381 + A-rich Low_complexity Low_complexity 1 37 0 237 33 0 0 chr4 88896188 88896218 -113432129 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 321 321 101 13 chr4 88897211 88897370 -113430977 + L2 LINE L2 3141 3313 0 1984 133 3 23 chr4 88898979 88899280 -113429067 - AluSx SINE Alu -17 295 1 955 272 24 16 chr4 88899309 88899563 -113428784 - MIR SINE MIR -3 259 4 1369 121 280 0 chr4 88899764 88900046 -113428301 - MER46B DNA MER2_type 0 236 1 221 250 0 0 chr4 88900311 88900355 -113427992 + (CA)n Simple_repeat Simple_repeat 2 45 0 525 253 180 5 chr4 88900359 88900553 -113427794 + MIR SINE MIR 5 232 -30 1501 193 102 25 chr4 88901263 88901656 -113426691 - MER63B DNA MER1_type -8 428 6 1678 163 40 50 chr4 88902077 88902367 -113425980 + MER34B LTR ERV1 1 372 -193 2882 171 26 9 chr4 88902367 88902906 -113425441 + MER44D DNA MER2_type 1 603 -2 1678 163 40 50 chr4 88902906 88903099 -113425248 + MER34B LTR ERV1 372 565 0 2261 236 177 10 chr4 88903190 88904022 -113424325 - L1MC4 LINE L1 -3 8039 7069 497 185 100 39 chr4 88904032 88904162 -113424185 - L1MC4 LINE L1 -1123 6919 6782 664 300 61 20 chr4 88904302 88904549 -113423798 + MIR SINE MIR 6 262 0 26 30 0 0 chr4 88904564 88904597 -113423750 + AT_rich Low_complexity Low_complexity 1 33 0 293 326 83 23 chr4 88904841 88904973 -113423374 + MIR SINE MIR 96 235 -27 251 321 42 21 chr4 88906074 88906250 -113422097 - MIR SINE MIR -30 232 1 193 313 0 31 chr4 88906683 88906747 -113421600 - MIR SINE MIR -1 261 200 286 309 9 18 chr4 88907339 88907449 -113420898 + L2 LINE L2 2743 2851 -463 1430 152 45 76 chr4 88910403 88910693 -113417654 + AluJo SINE Alu 1 281 -31 186 43 0 0 chr4 88910696 88910719 -113417628 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2476 217 97 16 chr4 88910984 88912119 -113416228 + L1ME1 LINE L1 4646 5866 -300 1591 161 35 61 chr4 88912119 88912461 -113415886 + MER44D DNA MER2_type 1 603 -6 989 243 59 11 chr4 88912468 88912740 -113415607 + L1ME1 LINE L1 5875 6159 -7 223 254 0 0 chr4 88912908 88912963 -113415384 - MIR SINE MIR -111 151 97 226 240 31 83 chr4 88913017 88913113 -113415234 - MIR SINE MIR -56 206 116 806 131 85 46 chr4 88913340 88913493 -113414854 - AluJb SINE Alu -7 305 147 2495 185 6 31 chr4 89013604 89014317 -113314030 + L1M3 LINE L1 5075 5776 -407 3706 62 4 2 chr4 89014505 89014987 -113313360 + L1PA8 LINE L1 5690 6172 0 1214 153 71 46 chr4 89015071 89015353 -113312994 + AluY SINE Alu 4 292 -19 2065 282 5 2 chr4 89015673 89016091 -113312256 + L1P LINE L1 4637 5055 -1091 1153 167 5 10 chr4 89016219 89016423 -113311924 - MER6A DNA MER2_type -365 240 38 1875 140 24 3 chr4 89016424 89016716 -113311631 + AluSx SINE Alu 1 298 -14 235 229 16 0 chr4 89016768 89016829 -113311518 + Charlie1 DNA MER1_type 2308 2369 -392 7478 35 1 2 chr4 89016943 89017898 -113310449 - L1P LINE L1 -1602 4544 3591 3112 113 7 73 chr4 89018017 89018634 -113309713 + L1P LINE L1 391 966 -5180 489 34 0 0 chr4 89019200 89019259 -113309088 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 637 272 65 37 chr4 89020207 89020606 -113307741 - L1PBb LINE L1 -4945 1248 777 1797 221 92 26 chr4 89021377 89022039 -113306308 - L1M4 LINE L1 -1829 4317 3612 275 231 44 11 chr4 89022059 89022150 -113306197 + L1MC4a LINE L1 5888 5981 -1827 1441 183 4 4 chr4 89022650 89022890 -113305457 - AluSx SINE Alu -72 240 1 2806 161 42 6 chr4 89022995 89023518 -113304829 - MER34 LTR ERV1 0 542 1 3200 218 34 9 chr4 89024044 89024862 -113303485 + L1PA15-16 LINE L1 2077 2915 -3934 1627 144 15 8 chr4 89025060 89025324 -113303023 + AluSx SINE Alu 36 301 -11 6693 94 25 12 chr4 89025808 89026809 -113301538 - HERVL LTR ERVL -1310 4344 3331 1629 107 66 8 chr4 89026930 89027172 -113301175 - AluSx SINE Alu -50 262 7 1101 97 0 28 chr4 89027944 89028120 -113300227 + MER11B LTR ERVK 1066 1236 0 226 71 0 71 chr4 89028121 89028163 -113300184 - MSTC LTR MaLR -389 39 1 615 159 103 16 chr4 89028164 89028290 -113300057 - MLT1A1 LTR MaLR -228 137 1 3646 174 17 11 chr4 89028902 89029602 -113298745 - L1PA16 LINE L1 -16 6150 5447 702 187 18 6 chr4 89029611 89029777 -113298570 - L1PA16 LINE L1 -863 5283 5116 218 250 0 0 chr4 89030491 89030535 -113297812 + L2 LINE L2 3181 3224 -89 720 151 0 17 chr4 89030932 89031051 -113297296 + FLAM_C SINE Alu 2 118 -15 358 188 84 39 chr4 89031751 89031878 -113296469 - L1MC5 LINE L1 -973 7069 6839 403 221 250 0 chr4 89031880 89031984 -113296363 - FLAM_C SINE Alu -13 130 1 626 260 104 0 chr4 89032025 89032198 -113296149 - L1MC4a LINE L1 -1002 6806 6616 3128 146 39 3 chr4 89032409 89033005 -113295342 + L1P LINE L1 1888 2504 -3642 2554 215 40 8 chr4 89033115 89033656 -113294691 - L1 LINE L1 -1194 4952 4381 360 0 0 0 chr4 89033656 89033696 -113294651 + (TG)n Simple_repeat Simple_repeat 2 41 0 2554 215 40 8 chr4 89033696 89033870 -113294477 - L1 LINE L1 -1765 4381 4214 1533 116 49 5 chr4 89033871 89034095 -113294252 + AluSc SINE Alu 1 234 -75 7788 98 28 7 chr4 89034197 89035581 -113292766 + L1P3 LINE L1 4178 5585 -569 33 66 0 0 chr4 89036371 89036432 -113291915 + AT_rich Low_complexity Low_complexity 1 61 0 240 130 0 0 chr4 89036583 89036629 -113291718 + (G)n Simple_repeat Simple_repeat 1 46 0 415 85 17 0 chr4 89036707 89036766 -113291581 - Alu SINE Alu -250 60 1 3940 92 1 2 chr4 89036766 89037478 -113290869 - L1P3 LINE L1 -683 5489 4778 1177 58 0 0 chr4 89037593 89037747 -113290600 - L1PA8 LINE L1 -196 5976 5823 237 33 0 0 chr4 89037747 89037777 -113290570 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 2039 104 18 0 chr4 89037787 89038065 -113290282 - AluY SINE Alu -28 283 1 1299 119 36 47 chr4 89038065 89038318 -113290029 - Tigger2a DNA MER2_type -175 259 10 678 187 12 23 chr4 89038405 89038576 -113289771 + L1M4 LINE L1 5188 5356 -790 3267 258 29 15 chr4 89038713 89039791 -113288556 + L1PA15-16 LINE L1 1741 2833 -4016 2207 97 10 3 chr4 89039984 89040272 -113288075 + AluY SINE Alu 1 290 -21 26 0 0 0 chr4 89040281 89040307 -113288040 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr4 89040630 89040653 -113287694 + (TA)n Simple_repeat Simple_repeat 1 23 0 432 100 14 0 chr4 89040653 89040723 -113287624 - L1P5 LINE L1 -370 5781 5711 5132 227 13 8 chr4 89040746 89042067 -113286280 - L1 LINE L1 -810 5336 4009 6198 112 1 13 chr4 89042175 89043158 -113285189 - L1P LINE L1 -3701 2445 1475 5794 245 25 8 chr4 89043258 89045026 -113283321 - L1 LINE L1 -2127 4019 2222 11056 99 3 13 chr4 89045201 89046932 -113281415 - L1P LINE L1 -1974 4172 2459 432 0 0 0 chr4 89046934 89046982 -113281365 + (TA)n Simple_repeat Simple_repeat 2 49 0 3298 96 24 8 chr4 89047084 89047617 -113280730 + L1P3 LINE L1 1171 1712 -4749 1121 273 62 11 chr4 89047658 89048303 -113280044 + L1ME LINE L1 2758 3435 -2711 965 228 19 8 chr4 89048323 89048586 -113279761 + L1ME LINE L1 4451 4716 -1430 192 40 0 0 chr4 89048776 89048801 -113279546 + (C)n Simple_repeat Simple_repeat 1 25 0 236 171 0 40 chr4 89048827 89048903 -113279444 + (CCA)n Simple_repeat Simple_repeat 2 74 0 242 154 46 34 chr4 89048938 89049113 -113279234 + (CCCA)n Simple_repeat Simple_repeat 3 179 0 204 122 0 0 chr4 89049139 89049180 -113279167 + (A)n Simple_repeat Simple_repeat 1 41 0 4765 172 36 12 chr4 89049565 89050951 -113277396 - L1MA4 LINE L1 -6 6294 4882 1345 213 48 58 chr4 89051609 89051714 -113276633 + L1ME LINE L1 4979 5084 -1082 2267 117 3 0 chr4 89051714 89052022 -113276325 + AluSx SINE Alu 1 309 -3 1345 213 48 58 chr4 89052022 89052621 -113275726 + L1ME LINE L1 5084 5665 -501 1247 203 9 75 chr4 89052621 89052942 -113275405 + AluJo SINE Alu 1 300 -12 1345 213 48 58 chr4 89052942 89053001 -113275346 + L1ME LINE L1 5665 5723 -443 270 56 0 0 chr4 89053862 89053898 -113274449 + (CA)n Simple_repeat Simple_repeat 2 37 0 484 169 11 0 chr4 89054442 89054531 -113273816 - Tigger5 DNA MER2_type 0 2323 2234 1096 67 7 0 chr4 89154555 89154705 -113173642 - L1M1 LINE L1 -5174 2391 2241 3370 130 87 25 chr4 89155027 89155627 -113172720 - L1PA16 LINE L1 -7 6159 5523 254 156 0 62 chr4 89157804 89157868 -113170479 + (TTA)n Simple_repeat Simple_repeat 1 60 0 307 323 104 36 chr4 89157871 89158063 -113170284 - MIR SINE MIR -6 256 52 1253 184 64 130 chr4 89158518 89158856 -113169491 - L1MC5 LINE L1 -58 7903 7673 1568 170 35 0 chr4 89158856 89159139 -113169208 - L1PB4 LINE L1 -17 6139 5847 1253 184 64 130 chr4 89159139 89159560 -113168787 - L1MC5 LINE L1 -288 7673 7226 509 264 35 17 chr4 89159578 89159809 -113168538 - L1MC4 LINE L1 -733 7228 7023 307 324 66 7 chr4 89160343 89160479 -113167868 + MIR SINE MIR 63 206 -56 213 407 44 15 chr4 89160505 89160640 -113167707 - L2 LINE L2 0 3272 3134 357 24 0 0 chr4 89161436 89161478 -113166869 + (TG)n Simple_repeat Simple_repeat 2 43 0 758 271 64 10 chr4 89161776 89161979 -113166368 + MLT1I LTR MaLR 63 276 -133 239 180 60 0 chr4 89162048 89162098 -113166249 + MLT1J2 LTR MaLR 398 450 0 902 195 59 6 chr4 89162127 89162296 -113166051 + AluJo SINE Alu 1 178 -134 3853 198 35 19 chr4 89163207 89164436 -113163911 + L1MD1 LINE L1 4830 6076 -166 817 196 34 0 chr4 89164437 89164690 -113163657 - L1MC2 LINE L1 -317 6027 5698 985 136 23 0 chr4 89164704 89164880 -113163467 + L1MD1 LINE L1 6062 6241 -1 323 289 41 0 chr4 89165115 89165212 -113163135 + MIR SINE MIR 57 157 -105 2290 193 13 21 chr4 89165497 89165968 -113162379 - MER74A LTR ERVL 0 558 92 180 0 0 0 chr4 89167459 89167479 -113160868 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 225 0 0 0 chr4 89167478 89167503 -113160844 + (CA)n Simple_repeat Simple_repeat 1 25 0 2326 40 0 7 chr4 89167784 89168062 -113160285 + AluY SINE Alu 1 276 -35 2738 122 19 12 chr4 89170127 89170728 -113157619 - L1P5 LINE L1 -462 5689 5082 820 161 7 0 chr4 89170731 89170880 -113157467 + L1 LINE L1 3996 4145 -2001 * 1669 182 31 29 chr4 89170870 89171321 -113157026 - L1 LINE L1 -1066 5080 4629 743 151 196 46 chr4 89171324 89171543 -113156804 - LTR22 LTR ERVK -257 252 1 10081 122 36 1 chr4 89171543 89173273 -113155074 - HERVK22 LTR ERVK 0 6837 3181 839 184 20 0 chr4 89173274 89173421 -113154926 - HERVK22 LTR ERVK -4361 2476 2327 183 129 0 0 chr4 89173609 89173640 -113154707 + (T)n Simple_repeat Simple_repeat 1 31 0 4536 132 6 0 chr4 89173906 89174595 -113153752 - HERVK22 LTR ERVK -6142 695 3 1830 193 53 88 chr4 89174602 89175125 -113153222 - LTR22 LTR ERVK -4 505 1 9441 93 9 1 chr4 89175125 89176472 -113151875 - L1P3 LINE L1 -5102 1359 2 1303 174 3 58 chr4 89176478 89176924 -113151423 - L1MD3 LINE L1 -332 5822 5446 4180 77 33 8 chr4 89176924 89178021 -113150326 + MER11A LTR ERVK 1 1266 0 7296 175 24 9 chr4 89178021 89178901 -113149446 - L1M1 LINE L1 -743 6822 5957 1974 208 49 7 chr4 89178901 89179310 -113149037 + MSTA LTR MaLR 1 426 -2 8592 184 29 10 chr4 89179312 89180931 -113147416 + MSTA-int LTR MaLR 1 1650 -1 2093 170 83 0 chr4 89180932 89181327 -113147020 + MSTA LTR MaLR 1 428 0 7296 175 24 9 chr4 89181327 89182162 -113146185 - L1M1 LINE L1 -1607 5958 5125 * 9181 214 83 35 chr4 89182161 89184823 -113143524 - L1M1 LINE L1 -4170 3395 224 679 286 85 14 chr4 89184928 89185291 -113143056 + HAL1 LINE L1 1247 1635 -872 2082 321 118 36 chr4 89188670 89189652 -113138695 + L2 LINE L2 82 983 -2331 1973 152 54 11 chr4 89189652 89190001 -113138346 + THE1B LTR MaLR 1 364 0 11293 101 12 6 chr4 89190001 89191569 -113136778 + THE1B-int LTR MaLR 1 1578 -2 2289 126 30 33 chr4 89191571 89191936 -113136411 + THE1B LTR MaLR 1 364 0 2082 321 118 36 chr4 89191936 89192265 -113136082 + L2 LINE L2 983 1504 -1810 1093 342 66 10 chr4 89192339 89192821 -113135526 + L2 LINE L2 2108 2616 -698 458 242 95 32 chr4 89192798 89192988 -113135359 + L2 LINE L2 3110 3311 -2 * 231 272 0 0 chr4 89193176 89193257 -113135090 + (TA)n Simple_repeat Simple_repeat 2 82 0 22 35 0 0 chr4 89193443 89193472 -113134875 + AT_rich Low_complexity Low_complexity 1 29 0 227 361 10 21 chr4 89193811 89193908 -113134439 + MIR SINE MIR 23 118 -90 423 224 185 5 chr4 89194187 89194392 -113133955 + MER33 DNA MER1_type 1 242 -82 247 338 17 82 chr4 89195286 89195517 -113132830 + L3 LINE CR1 676 891 -686 253 235 0 29 chr4 89195914 89195982 -113132365 - MER74A LTR ERVL -492 66 1 2786 232 59 14 chr4 89196417 89197686 -113130661 - L1MDa LINE L1 -2849 3691 2364 342 222 176 37 chr4 89197687 89197795 -113130552 - L1MDa LINE L1 -5769 771 649 1965 148 0 0 chr4 89197799 89198077 -113130270 - AluSx SINE Alu -6 306 29 23 0 0 0 chr4 89198174 89198197 -113130150 + AT_rich Low_complexity Low_complexity 1 23 0 305 345 56 7 chr4 89198305 89198447 -113129900 + L2 LINE L2 2705 2853 -461 336 214 101 48 chr4 89198532 89198700 -113129647 - MER104 DNA Tc2 -3 177 1 432 294 75 65 chr4 89198945 89199316 -113129031 - L1ME3A LINE L1 -285 5885 5511 552 141 0 0 chr4 89199426 89199525 -113128822 - L1MA5A LINE L1 -3 6294 6196 315 236 0 45 chr4 89199589 89199678 -113128669 + MIR SINE MIR 170 254 -8 195 281 132 26 chr4 89200452 89200566 -113127781 - L3 LINE CR1 -11 1566 1441 225 280 0 0 chr4 89200768 89200818 -113127529 - L3 LINE CR1 -474 1103 1054 22 88 0 0 chr4 89201008 89201065 -113127282 + AT_rich Low_complexity Low_complexity 1 57 0 194 235 98 0 chr4 89201170 89201221 -113127126 + L2 LINE L2 3254 3309 -4 205 345 12 41 chr4 89201263 89201434 -113126913 + L2 LINE L2 2349 2514 -800 280 263 175 18 chr4 89201830 89201944 -113126403 - L2 LINE L2 -8 3264 3133 7502 139 15 36 chr4 89203123 89204912 -113123435 + L1PA14 LINE L1 10 1652 -4494 912 83 30 0 chr4 89205013 89205146 -113123201 + L1MA2 LINE L1 6168 6304 0 2944 229 60 30 chr4 89205193 89205260 -113123087 + L1MB1 LINE L1 2922 2986 -3160 1609 212 28 19 chr4 89205260 89205619 -113122728 - MLT1A1 LTR MaLR -1 364 3 2944 229 60 30 chr4 89205619 89206659 -113121688 + L1MB1 LINE L1 2986 4062 -2084 536 232 45 0 chr4 89206664 89206819 -113121528 + L1MB1 LINE L1 4396 4557 -1589 5506 134 32 18 chr4 89206819 89208201 -113120146 + L1PA14 LINE L1 4775 6158 -3 3062 203 45 24 chr4 89208199 89208904 -113119443 + L1MB1 LINE L1 4549 5238 -930 * 297 0 0 0 chr4 89208904 89208937 -113119410 + (CA)n Simple_repeat Simple_repeat 2 34 0 3062 203 45 24 chr4 89208937 89208983 -113119364 + L1MB1 LINE L1 5238 5282 -886 2369 46 3 0 chr4 89208983 89209267 -113119080 - AluY SINE Alu -2 309 25 3062 203 45 24 chr4 89209267 89209382 -113118965 + L1MB1 LINE L1 5282 5451 -717 3049 112 16 31 chr4 89209386 89209894 -113118453 - LTR3b LTR ERVK 0 500 1 3052 194 34 6 chr4 89209908 89210592 -113117755 + L1MB1 LINE L1 5464 6166 -2 21 36 0 0 chr4 89211325 89211353 -113116994 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr4 89211848 89211887 -113116460 + AT_rich Low_complexity Low_complexity 1 39 0 2886 124 12 49 chr4 89211973 89212479 -113115868 - L1PA15 LINE L1 -4 6161 5675 3034 113 4 16 chr4 89212489 89212849 -113115498 - L1PB1 LINE L1 0 6151 5797 219 114 0 0 chr4 89212849 89212884 -113115463 + (TG)n Simple_repeat Simple_repeat 2 36 0 3034 113 4 16 chr4 89212884 89213009 -113115338 - L1PB1 LINE L1 -354 5797 5672 313 239 44 26 chr4 89213109 89213222 -113115125 - L1M1 LINE L1 -7438 127 13 * 6893 208 60 25 chr4 89213220 89216253 -113112094 - L1PA16 LINE L1 -11 7593 4450 2601 247 36 37 chr4 89216256 89216721 -113111626 - L1PA16 LINE L1 -4543 3038 2573 2064 144 33 22 chr4 89216721 89217081 -113111266 - THE1B LTR MaLR 0 364 1 2601 247 36 37 chr4 89217081 89217473 -113110874 - L1PA16 LINE L1 -5008 2573 2182 423 265 10 0 chr4 89217704 89217802 -113110545 - L1PA16 LINE L1 -5398 2183 2085 1328 336 33 24 chr4 89217958 89218535 -113109812 - L1PA16 LINE L1 -6203 1371 790 395 83 33 0 chr4 89218628 89218688 -113109659 - MSTA LTR MaLR 0 428 367 198 224 52 17 chr4 89218700 89218758 -113109589 + L2 LINE L2 2434 2493 -821 337 316 13 51 chr4 89218869 89219027 -113109320 + MIR SINE MIR 61 212 -50 222 37 0 0 chr4 89220957 89220984 -113107363 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 461 362 71 37 chr4 89221622 89222141 -113106206 + L2 LINE L2 2354 2890 -424 193 350 0 0 chr4 89223276 89223336 -113105011 - L2 LINE L2 0 3313 3254 1014 269 16 69 chr4 89224518 89224953 -113103394 - MLT1J LTR MaLR 0 511 100 5973 162 39 4 chr4 89226003 89227683 -113100664 - L1PB1 LINE L1 0 6151 4388 504 0 0 0 chr4 89227683 89227739 -113100608 + (TG)n Simple_repeat Simple_repeat 2 57 0 5973 162 39 4 chr4 89227739 89227949 -113100398 - L1PB1 LINE L1 -1763 4388 4187 * 8172 93 7 5 chr4 89227942 89229142 -113099205 + L1P LINE L1 2924 4125 -2021 4541 203 14 1 chr4 89229139 89230086 -113098261 - L1PB1 LINE L1 -1950 4196 3238 * 1864 103 72 4 chr4 89230087 89230350 -113097997 + AluSc SINE Alu 11 291 -18 302 71 0 36 chr4 89230399 89230451 -113097896 + L1P5 LINE L1 5528 5569 -587 4543 171 53 30 chr4 89230633 89231846 -113096501 - L1MB3 LINE L1 -1 6182 4951 220 143 24 0 chr4 89233190 89233232 -113095115 + (TA)n Simple_repeat Simple_repeat 2 44 0 541 57 14 0 chr4 89233469 89233539 -113094808 + L1P2 LINE L1 5657 5727 -427 1786 111 3 77 chr4 89233686 89233984 -113094363 + AluSg SINE Alu 29 304 -6 7166 45 0 0 chr4 89235476 89236491 -113091856 - L1PA5 LINE L1 -5 6149 5141 19149 38 16 2 chr4 89236491 89238905 -113089442 + L1PA5 LINE L1 2663 5108 -1038 2173 102 3 7 chr4 89238995 89239290 -113089057 + AluSc SINE Alu 1 294 -15 193 375 45 11 chr4 89239430 89239518 -113088829 + MIR SINE MIR 38 128 -80 1271 198 25 4 chr4 89239634 89239871 -113088476 + MSTD LTR MaLR 1 242 -154 953 168 17 23 chr4 89239945 89240118 -113088229 + MSTD LTR MaLR 224 395 -1 2580 140 31 0 chr4 89240120 89240535 -113087812 - MSTA LTR MaLR 0 428 1 11135 206 26 26 chr4 89241503 89244734 -113083613 + L1P4 LINE L1 2399 5618 -548 21 0 0 31 chr4 89246069 89246083 -113082264 + AT_rich Low_complexity Low_complexity 1 14 -17 2119 132 3 0 chr4 89246083 89246387 -113081960 - AluSx SINE Alu -7 305 1 21 0 0 31 chr4 89246387 89246404 -113081943 + AT_rich Low_complexity Low_complexity 14 31 0 27 0 0 0 chr4 89247555 89247582 -113080765 + AT_rich Low_complexity Low_complexity 1 27 0 273 218 96 103 chr4 89247797 89247953 -113080394 - MIR SINE MIR -7 255 101 1022 279 83 27 chr4 89247976 89248384 -113079963 - LTR16B LTR ERVL 0 464 34 704 240 11 22 chr4 89248675 89248854 -113079493 + MER5B DNA MER1_type 1 177 -1 22 35 0 0 chr4 89249110 89249139 -113079208 + AT_rich Low_complexity Low_complexity 1 29 0 2125 249 148 26 chr4 89249654 89250591 -113077756 + MER97b DNA MER1_type 1 1052 -1 217 233 0 0 chr4 89250652 89250695 -113077652 + CT-rich Low_complexity Low_complexity 3 45 0 638 251 56 14 chr4 89251510 89251725 -113076622 + L1M4 LINE L1 2539 2762 -3384 4749 93 16 5 chr4 89251731 89252405 -113075942 - L1PA13 LINE L1 0 6163 5482 854 201 17 11 chr4 89252425 89252599 -113075748 + FAM SINE Alu 1 175 0 25589 77 7 10 chr4 89252669 89257035 -113071312 - L1PA7 LINE L1 -2 6152 1808 30 27 0 0 chr4 89257447 89257484 -113070863 + AT_rich Low_complexity Low_complexity 1 37 0 2430 75 21 3 chr4 89258764 89259098 -113069249 - L1PB1 LINE L1 -1 6150 5811 5039 171 27 10 chr4 89259945 89261201 -113067146 - L1MB3 LINE L1 -7 6176 4903 24 53 0 0 chr4 89261702 89261740 -113066607 + AT_rich Low_complexity Low_complexity 1 38 0 34 42 0 0 chr4 89261786 89261834 -113066513 + AT_rich Low_complexity Low_complexity 1 48 0 1610 153 0 0 chr4 89262277 89262531 -113065816 - MLT1B LTR MaLR -135 255 2 199 0 65 0 chr4 89262580 89262611 -113065736 + (CTTTA)n Simple_repeat Simple_repeat 2 34 0 397 345 34 38 chr4 89262628 89262863 -113065484 + L2 LINE L2 2513 2746 -568 465 370 89 34 chr4 89262991 89263315 -113065032 + L2 LINE L2 2915 3256 -16 21 0 0 0 chr4 89263466 89263487 -113064860 + AT_rich Low_complexity Low_complexity 1 21 0 8953 187 23 37 chr4 89263536 89263854 -113064493 - L1 LINE L1 -1432 6133 5812 1547 167 96 37 chr4 89263854 89264208 -113064139 - THE1C LTR MaLR 0 375 1 8953 187 23 37 chr4 89264208 89266219 -113062128 - L1 LINE L1 -1753 5812 3795 36329 94 9 13 chr4 89266230 89270514 -113057833 - L1PA6 LINE L1 -1 6153 1903 7378 40 1 2 chr4 89270514 89271981 -113056366 + L1PA4 LINE L1 4688 6153 -2 36329 94 9 13 chr4 89271981 89273867 -113054480 - L1PA6 LINE L1 -4251 1903 11 20358 159 28 19 chr4 89273874 89275361 -113052986 - L1 LINE L1 -3752 3813 2341 2718 17 0 0 chr4 89275361 89275659 -113052688 - AluY SINE Alu -13 298 1 20358 159 28 19 chr4 89275659 89277943 -113050404 - L1 LINE L1 -5224 2341 13 2046 251 95 44 chr4 89278195 89278334 -113050013 - L1MEc LINE L1 -3700 2726 2595 1276 192 31 55 chr4 89278334 89278626 -113049721 - AluJo SINE Alu -23 289 5 2046 251 95 44 chr4 89278626 89278675 -113049672 - L1MEc LINE L1 -3831 2595 2550 1865 151 3 7 chr4 89278675 89278960 -113049387 - AluY SINE Alu -27 284 1 2046 251 95 44 chr4 89278960 89280096 -113048251 - L1MEc LINE L1 -3876 2550 1374 8453 162 23 9 chr4 89280309 89280355 -113047992 + L1P4 LINE L1 1811 1855 -4291 2339 67 7 0 chr4 89280355 89280637 -113047710 + AluY SINE Alu 16 299 -12 8453 162 23 9 chr4 89280637 89282171 -113046176 + L1P4 LINE L1 1855 3413 -2733 1504 123 9 0 chr4 89282170 89282397 -113045950 + L1P4 LINE L1 5460 5688 -473 * 5964 226 28 11 chr4 89282393 89282907 -113045440 - L1MCc LINE L1 -2587 4354 3850 2171 108 7 0 chr4 89282907 89283202 -113045145 - AluSq SINE Alu -16 297 1 5964 226 28 11 chr4 89283202 89284437 -113043910 - L1MCc LINE L1 -3091 3850 2573 1354 43 0 0 chr4 89284438 89284601 -113043746 + L1P5 LINE L1 5497 5659 -492 334 266 86 8 chr4 89286527 89286655 -113041692 + L2 LINE L2 2333 2470 -844 535 151 217 0 chr4 89286681 89286787 -113041560 + MER94 DNA DNA 6 134 0 218 293 64 83 chr4 89286886 89287043 -113041304 + L2 LINE L2 2605 2758 -556 444 260 206 23 chr4 89287365 89287584 -113040763 + MIR SINE MIR 1 259 -3 305 308 83 33 chr4 89287604 89287724 -113040623 + L2 LINE L2 3143 3268 -4 2267 129 45 36 chr4 89287777 89288006 -113040341 + L1MB3 LINE L1 5731 5956 -227 1325 142 59 0 chr4 89288006 89288225 -113040122 + MER46A DNA MER2_type 1 232 -4 2267 129 45 36 chr4 89288225 89288443 -113039904 + L1MB3 LINE L1 5956 6182 -1 2144 101 7 0 chr4 89288956 89289233 -113039114 - AluSc SINE Alu -30 279 1 422 298 60 13 chr4 89289755 89289906 -113038441 - MER103 DNA DNA -6 160 3 194 357 34 65 chr4 89291179 89291442 -113036905 - L2 LINE L2 -600 2714 2460 2874 218 111 32 chr4 89291639 89292462 -113035885 + Charlie1a DNA MER1_type 7 894 -561 657 264 32 22 chr4 89292471 89292748 -113035599 - L1MCc LINE L1 -5299 1642 1363 * 4141 194 50 7 chr4 89292743 89294363 -113033984 - L1MB1 LINE L1 -5 6399 4714 466 124 21 10 chr4 89294376 89294473 -113033874 - L1MA4A LINE L1 -7 6296 6199 322 255 68 0 chr4 89294483 89294644 -113033703 - L1MB1 LINE L1 -4047 2337 2166 2153 104 3 0 chr4 89294662 89294949 -113033398 - AluSc SINE Alu -7 302 15 1959 219 82 66 chr4 89294949 89295846 -113032501 - L1MB1 LINE L1 -4516 1787 800 330 311 25 42 chr4 89296041 89296160 -113032187 - L1M3de LINE L1 -5252 639 523 441 177 51 13 chr4 89296247 89296326 -113032021 - MER1B DNA MER1_type 0 333 252 1156 170 0 53 chr4 89296326 89296532 -113031815 - MER1B DNA MER1_type -91 206 12 1064 314 18 29 chr4 89296532 89296917 -113031430 - L1M3de LINE L1 -5509 382 2 3271 277 106 34 chr4 89296920 89298177 -113030170 - L1MCc LINE L1 -5047 1376 30 2134 166 53 78 chr4 89298180 89298766 -113029581 + Charlie1a DNA MER1_type 885 1455 0 223 368 114 15 chr4 89298767 89299039 -113029308 - L2 LINE L2 -1051 2263 1965 299 354 8 16 chr4 89300182 89300309 -113028038 + L2 LINE L2 2942 3067 -246 243 0 0 0 chr4 89301258 89301285 -113027062 + (TG)n Simple_repeat Simple_repeat 1 27 0 528 289 36 0 chr4 89301537 89301703 -113026644 + MIR SINE MIR 47 218 -44 701 140 0 9 chr4 89301712 89301826 -113026521 - MSTA LTR MaLR -315 113 1 342 288 29 79 chr4 89301827 89301966 -113026381 + HAL1 LINE L1 811 942 -1565 239 397 35 9 chr4 89303029 89303145 -113025202 + L2 LINE L2 3154 3272 0 2048 129 0 7 chr4 89303983 89304278 -113024069 + AluSx SINE Alu 1 293 -19 446 94 42 8 chr4 89304864 89304941 -113023406 - THE1C LTR MaLR 0 428 283 419 97 16 0 chr4 89304942 89305004 -113023343 + AluSg SINE Alu 10 72 -238 1628 119 0 0 chr4 89305101 89305320 -113023027 + AluSg SINE Alu 62 280 -30 1484 146 73 33 chr4 89305343 89305644 -113022703 - THE1C LTR MaLR -62 313 1 428 314 142 31 chr4 89306048 89306627 -113021720 + HAL1 LINE L1 1253 1895 -612 1758 174 10 7 chr4 89306645 89306949 -113021398 + AluJb SINE Alu 1 305 -7 307 306 73 58 chr4 89307409 89307615 -113020732 + HAL1 LINE L1 2230 2438 -69 1533 224 111 43 chr4 89307687 89308173 -113020174 + MLT2B1 LTR ERVL 2 520 0 30 100 0 0 chr4 89308304 89308404 -113019943 + AT_rich Low_complexity Low_complexity 1 100 0 9867 213 47 16 chr4 89309773 89313334 -113015013 + L1PA16 LINE L1 2387 6059 -107 9679 128 14 41 chr4 89313334 89314979 -113013368 + Tigger1 DNA MER2_type 819 2418 0 22 0 0 0 chr4 89315373 89315395 -113012952 + AT_rich Low_complexity Low_complexity 1 22 0 1256 206 64 9 chr4 89316104 89316430 -113011917 + MER2 DNA MER2_type 1 344 0 1578 187 23 23 chr4 89317278 89317620 -113010727 - L1MD3 LINE L1 -12 7983 7642 3306 188 87 85 chr4 89317675 89318538 -113009809 + MER21A LTR ERV1 39 903 -28 225 0 0 0 chr4 89321631 89321656 -113006691 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 315 0 0 0 chr4 89321655 89321690 -113006657 + (TG)n Simple_repeat Simple_repeat 2 36 0 948 285 113 23 chr4 89322502 89322982 -113005365 + MLT1H LTR MaLR 22 595 0 5275 50 7 3 chr4 89323110 89323785 -113004562 + L1PA7 LINE L1 5477 6154 0 2303 80 0 10 chr4 89323814 89324114 -113004233 - AluY SINE Alu -14 297 1 205 373 149 8 chr4 89325152 89325286 -113003061 + MIR3 SINE MIR 16 168 -40 2283 226 117 30 chr4 89326340 89327181 -113001166 + L1M4c LINE L1 540 1453 -4931 2136 197 27 5 chr4 89327188 89327635 -113000712 - L1PA16 LINE L1 -2271 3875 3419 6451 189 32 11 chr4 89327637 89329355 -112998992 + L1PA16 LINE L1 3884 5634 -532 1296 171 8 0 chr4 89329455 89329689 -112998658 + L1PA16 LINE L1 5917 6152 -14 1063 216 65 26 chr4 89329691 89329779 -112998568 + L1M4c LINE L1 1435 1518 -4866 1130 188 31 0 chr4 89329779 89330008 -112998339 + MER46A DNA MER2_type 1 236 0 1063 216 65 26 chr4 89330008 89330225 -112998122 + L1M4c LINE L1 1518 1752 -4632 1486 180 13 6 chr4 89330289 89330600 -112997747 - L1 LINE L1 -2649 3497 3185 1222 211 23 6 chr4 89330599 89331000 -112997347 + L1M4c LINE L1 1731 2233 -4151 * 1343 184 15 8 chr4 89331019 89331286 -112997061 + L1MB3 LINE L1 5911 6179 -4 23 0 0 0 chr4 89331729 89331752 -112996595 + AT_rich Low_complexity Low_complexity 1 23 0 717 288 98 28 chr4 89331828 89332228 -112996119 + MLT1J1 LTR MaLR 17 444 -2 1609 242 3 6 chr4 89332322 89332681 -112995666 + L1MA9 LINE L1 1 358 -6672 572 146 49 0 chr4 89332688 89332811 -112995536 + L1MA8 LINE L1 5168 5296 -850 321 263 75 15 chr4 89332791 89332924 -112995423 + L1MA9 LINE L1 1353 1493 -5537 * 1963 192 35 115 chr4 89332945 89333742 -112994605 + L1MA9 LINE L1 3581 4313 -2793 * 3609 185 51 25 chr4 89333730 89334135 -112994212 + L1MA9 LINE L1 5850 6243 -1029 3877 39 0 0 chr4 89334135 89334603 -112993744 + L1PA7 LINE L1 5674 6141 -13 3609 185 51 25 chr4 89334603 89335052 -112993295 + L1MA9 LINE L1 6243 6752 -520 234 0 0 0 chr4 89335052 89335078 -112993269 + (TC)n Simple_repeat Simple_repeat 2 27 0 3609 185 51 25 chr4 89335078 89335405 -112992942 + L1MA9 LINE L1 6752 7069 -203 705 218 0 8 chr4 89335405 89335538 -112992809 - MER8 DNA MER2_type 0 239 108 676 191 6 19 chr4 89335544 89335701 -112992646 + L1MA9 LINE L1 7076 7230 -42 1320 135 39 0 chr4 89335723 89335931 -112992416 + L1MA8 LINE L1 5430 5645 -667 1561 157 46 11 chr4 89335932 89336213 -112992134 - Tigger3b DNA MER2_type 0 1231 941 1223 183 56 32 chr4 89336214 89336327 -112992020 + AluJo SINE Alu 1 110 -202 209 57 29 0 chr4 89336327 89336362 -112991985 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 1223 183 56 32 chr4 89336362 89336532 -112991815 + AluJo SINE Alu 110 291 -21 1045 194 140 29 chr4 89336532 89336846 -112991501 + L1ME3A LINE L1 5813 6161 -9 5226 131 54 9 chr4 89336861 89337775 -112990572 - Tigger3b DNA MER2_type -275 956 2 1367 191 130 9 chr4 89337775 89338105 -112990242 + L1MA8 LINE L1 5644 6013 -278 485 118 21 43 chr4 89338107 89338158 -112990189 + L1MA9 LINE L1 6217 6267 -45 1615 183 96 3 chr4 89338158 89338492 -112989855 + MLT1A1 LTR MaLR 1 365 0 485 118 21 43 chr4 89338492 89338533 -112989814 + L1MA9 LINE L1 6267 6307 -5 182 336 118 0 chr4 89338729 89338839 -112989508 + L2 LINE L2 3191 3313 0 189 0 0 0 chr4 89339734 89339755 -112988592 + (TA)n Simple_repeat Simple_repeat 2 22 0 4437 163 13 16 chr4 89339755 89340576 -112987771 - L1MA7 LINE L1 -42 6249 5431 234 176 0 0 chr4 89340575 89340626 -112987721 - L1MEc LINE L1 -4000 2396 2346 * 1424 276 74 19 chr4 89340625 89341482 -112986865 - L1MEc LINE L1 -5326 1070 15 899 117 77 0 chr4 89341577 89341743 -112986604 - L1P2 LINE L1 -570 5584 5402 2880 215 44 22 chr4 89341774 89342697 -112985650 - L1M2 LINE L1 -5906 1303 1 266 347 130 63 chr4 89344068 89344368 -112983979 + L2 LINE L2 2953 3272 0 266 381 0 9 chr4 89344997 89345102 -112983245 - MIR SINE MIR -58 150 47 322 172 18 31 chr4 89345953 89346116 -112982231 + (TA)n Simple_repeat Simple_repeat 1 161 0 2803 234 19 27 chr4 89346997 89347740 -112980607 - L1ME1 LINE L1 -5 6161 5425 13148 208 41 9 chr4 89347764 89350285 -112978062 - L1PB2 LINE L1 -8 6859 4421 2409 82 0 3 chr4 89350285 89350591 -112977756 - AluSp SINE Alu -8 305 1 13148 208 41 9 chr4 89350591 89352924 -112975423 - L1PB2 LINE L1 -2446 4421 1845 1945 164 38 0 chr4 89352924 89353266 -112975081 - THE1A LTR MaLR 0 355 1 10632 113 17 1 chr4 89353270 89354821 -112973526 - THE1A-int LTR MaLR -4 1576 1 1845 157 40 57 chr4 89354821 89355191 -112973156 - THE1B LTR MaLR 0 364 1 351 330 0 11 chr4 89355348 89355439 -112972908 - MIR SINE MIR -161 101 12 199 273 18 18 chr4 89355490 89355545 -112972802 + MIR SINE MIR 204 258 -4 309 269 62 39 chr4 89355980 89356110 -112972237 + MER91C DNA MER1_type 4 136 -4 225 239 22 0 chr4 89356539 89356585 -112971762 + L2 LINE L2 3140 3186 -86 21 36 0 0 chr4 89357114 89357142 -112971205 + AT_rich Low_complexity Low_complexity 1 28 0 1358 168 0 0 chr4 89357957 89358177 -112970170 - HUERS-P2 LTR ERV1 -5056 2481 2262 3559 187 34 41 chr4 89358482 89360222 -112968125 - HUERS-P2 LTR ERV1 -393 4824 282 903 288 50 52 chr4 89360258 89360661 -112967686 - HUERS-P2 LTR ERV1 -2486 602 201 2865 128 94 2 chr4 89360757 89361216 -112967131 - MER61D LTR ERV1 0 501 1 969 254 50 82 chr4 89361347 89361812 -112966535 + MLT1J2 LTR MaLR 1 450 0 241 393 16 11 chr4 89361901 89362092 -112966255 + MER117 DNA MER1_type 6 197 0 280 56 0 0 chr4 89362344 89362380 -112965967 + tRNA-Glu-GAG tRNA tRNA 1 36 -39 610 233 0 33 chr4 89362435 89362585 -112965762 + L2 LINE L2 3169 3313 0 375 233 146 0 chr4 89363126 89363229 -112965118 + MER45A DNA AcHobo 61 178 0 16543 44 3 3 chr4 89364511 89368144 -112960203 + L1PA5 LINE L1 2521 6148 -6 2181 111 3 0 chr4 89369322 89369619 -112958728 + AluSc SINE Alu 1 298 -11 332 78 0 0 chr4 89371555 89371606 -112956741 - L1PA4 LINE L1 -2 6153 6103 368 225 140 79 chr4 89371678 89371993 -112956354 - HAL1b LINE L1 -49 1299 966 490 306 74 55 chr4 89372252 89372563 -112955784 - HAL1b LINE L1 -1031 317 1 2832 160 142 7 chr4 89372852 89373428 -112954919 + L1PBa LINE L1 151 804 -6059 592 222 88 6 chr4 89374815 89374986 -112953361 - MIR SINE MIR -29 233 49 277 146 41 49 chr4 89377508 89377631 -112950716 + (TTATA)n Simple_repeat Simple_repeat 3 124 0 632 358 46 20 chr4 89378011 89378558 -112949789 + L1ME1 LINE L1 91 651 -5745 406 216 45 18 chr4 89378601 89378712 -112949635 + L1PB4 LINE L1 6041 6154 -2 362 291 52 0 chr4 89378719 89378929 -112949418 + L1ME1 LINE L1 3727 3947 -2268 2340 268 49 19 chr4 89378959 89379732 -112948615 + L1ME1 LINE L1 5435 6230 -5 2137 87 69 0 chr4 89381099 89381375 -112946972 - AluSg SINE Alu -15 295 1 576 311 72 0 chr4 89382549 89382758 -112945589 - MIR SINE MIR -37 225 2 661 152 0 0 chr4 89383747 89383846 -112944501 - MSTA LTR MaLR -2 426 328 918 120 148 0 chr4 89383866 89384008 -112944339 - MSTA LTR MaLR -265 163 1 2237 158 27 52 chr4 89384125 89384568 -112943779 + MSTB1 LTR MaLR 1 432 0 186 279 88 0 chr4 89384747 89384815 -112943532 + L3 LINE CR1 1317 1390 -187 1443 191 32 21 chr4 89385501 89385783 -112942564 - AluJb SINE Alu -13 299 15 234 207 0 0 chr4 89386362 89386420 -112941927 + (CA)n Simple_repeat Simple_repeat 2 59 0 914 253 91 36 chr4 89386563 89386924 -112941423 + L1ME4a LINE L1 5582 5977 -144 2282 107 0 7 chr4 89386924 89387232 -112941115 + AluSq SINE Alu 1 306 -7 914 253 91 36 chr4 89387232 89387345 -112941002 + L1ME4a LINE L1 5977 6082 -39 7418 34 0 0 chr4 89387613 89388550 -112939797 - L1PA4 LINE L1 0 6155 5219 180 0 0 0 chr4 89389223 89389243 -112939104 + (TTA)n Simple_repeat Simple_repeat 2 21 0 8629 164 5 15 chr4 89389247 89391896 -112936451 - L1PB1 LINE L1 -11 6856 4227 270 81 0 0 chr4 89391934 89391971 -112936376 + (T)n Simple_repeat Simple_repeat 1 37 0 2616 61 0 3 chr4 89391971 89392299 -112936048 - LTR17 LTR ERV1 -453 327 1 2426 62 0 0 chr4 89392299 89392591 -112935756 - HERV17 LTR ERV1 0 8626 8335 287 77 0 0 chr4 89392581 89392620 -112935727 - HERV17 LTR ERV1 -1078 7548 7510 * 6449 48 3 0 chr4 89392608 89393385 -112934962 - HERV17 LTR ERV1 -2602 6024 5246 4713 41 0 2 chr4 89393485 89394044 -112934303 - HERV17 LTR ERV1 -5639 2987 2430 495 79 0 0 chr4 89394029 89394092 -112934255 - HERV17 LTR ERV1 -6612 2014 1952 * 291 139 0 0 chr4 89394079 89394122 -112934225 - HERV17 LTR ERV1 -8583 43 1 * 2083 101 48 18 chr4 89394122 89394592 -112933755 - LTR17 LTR ERV1 0 780 247 10623 143 91 9 chr4 89394595 89397569 -112930778 - L1PB1 LINE L1 -2647 4215 998 251 263 50 61 chr4 89398666 89398765 -112929582 - MIR SINE MIR -30 232 135 29 60 0 0 chr4 89399245 89399295 -112929052 + AT_rich Low_complexity Low_complexity 1 50 0 22 35 0 0 chr4 89399563 89399592 -112928755 + AT_rich Low_complexity Low_complexity 1 29 0 13260 151 47 7 chr4 89399719 89401625 -112926722 - Tigger1 DNA MER2_type 0 2418 401 2758 187 17 62 chr4 89401625 89402266 -112926081 - LTR9 LTR ERV1 0 612 1 13260 151 47 7 chr4 89402266 89402684 -112925663 - Tigger1 DNA MER2_type -2017 401 1 250 316 38 61 chr4 89403211 89403494 -112924853 + MLT1J2 LTR MaLR 65 393 -57 199 315 45 45 chr4 89403864 89403975 -112924372 + L2 LINE L2 2212 2322 -992 192 182 0 0 chr4 89405088 89405132 -112923215 + CT-rich Low_complexity Low_complexity 3 46 0 185 271 85 0 chr4 89405156 89405215 -112923132 - L2 LINE L2 -1 3312 3249 257 325 50 17 chr4 89405828 89405948 -112922399 - L2 LINE L2 -9 3304 3181 1005 48 0 0 chr4 89405953 89406078 -112922269 - L1PA7 LINE L1 -3 6151 6027 1501 176 70 3 chr4 89406348 89406677 -112921670 - L1MD3 LINE L1 0 7995 7645 1638 215 82 29 chr4 89406744 89407233 -112921114 - LTR48B LTR ERV1 0 644 130 475 323 122 25 chr4 89407392 89407754 -112920593 - MLT1J LTR MaLR -103 408 12 30 27 0 0 chr4 89408711 89408748 -112919599 + AT_rich Low_complexity Low_complexity 1 37 0 265 401 95 0 chr4 89409240 89409387 -112918960 - MER91A DNA MER1_type 0 196 36 1728 133 118 13 chr4 89409736 89410051 -112918296 + L1PA16 LINE L1 5816 6163 -3 303 28 0 0 chr4 89410290 89410326 -112918021 + (TC)n Simple_repeat Simple_repeat 1 36 0 488 249 149 17 chr4 89412035 89412216 -112916131 + L2 LINE L2 604 808 -2506 2026 187 71 10 chr4 89412217 89412710 -112915637 + Charlie1b DNA MER1_type 1 523 0 541 286 145 8 chr4 89412764 89413019 -112915328 - MER5C DNA MER1_type -34 290 1 * 1035 267 59 61 chr4 89413019 89413478 -112914869 + L2 LINE L2 802 1259 -2055 518 316 95 28 chr4 89413501 89413786 -112914561 - MLT1I LTR MaLR -21 388 85 3086 305 101 14 chr4 89413892 89415203 -112913144 + L2 LINE L2 1268 2693 -621 375 304 16 8 chr4 89415256 89415381 -112912966 + MER94 DNA DNA 7 132 -2 223 333 46 37 chr4 89415786 89415894 -112912453 - L2 LINE L2 -43 3229 3121 682 303 54 12 chr4 89415998 89416239 -112912108 - MIR SINE MIR -10 252 2 22 0 0 0 chr4 89416542 89416564 -112911783 + AT_rich Low_complexity Low_complexity 1 22 0 1161 240 48 77 chr4 89416858 89417442 -112910905 - Charlie7 DNA MER1_type -122 2490 1924 1055 209 62 16 chr4 89417443 89417763 -112910584 - L1MC3 LINE L1 -1 7784 7450 3850 271 72 23 chr4 89417779 89417865 -112910482 - Charlie7 DNA MER1_type -675 1937 1857 8681 52 28 0 chr4 89417865 89419720 -112908627 + L1PA5 LINE L1 4272 6147 -7 3850 271 72 23 chr4 89419720 89421209 -112907138 - Charlie7 DNA MER1_type -755 1857 284 1560 216 41 34 chr4 89421266 89421678 -112906669 + MLT1C LTR MaLR 53 467 0 313 282 143 46 chr4 89421723 89421939 -112906408 - Charlie7 DNA MER1_type -2374 238 2 811 225 28 11 chr4 89422273 89422455 -112905892 - AluJo SINE Alu -6 306 122 2196 178 37 32 chr4 89422681 89423142 -112905205 + MLT1C LTR MaLR 1 463 -4 801 270 50 8 chr4 89423153 89423394 -112904953 + MIR SINE MIR 12 262 0 236 284 126 16 chr4 89423465 89423592 -112904755 - L1ME LINE L1 -400 5721 5581 2524 24 7 7 chr4 89424362 89424654 -112903693 + AluY SINE Alu 13 304 -7 396 0 0 0 chr4 89425089 89425133 -112903214 + (CA)n Simple_repeat Simple_repeat 2 45 0 1641 179 25 57 chr4 89425814 89426217 -112902130 + MLT1B LTR MaLR 1 390 0 202 329 24 47 chr4 89426438 89426523 -112901824 + MIR SINE MIR 8 90 -172 4305 159 68 10 chr4 89426776 89427593 -112900754 + MER6 DNA MER2_type 1 865 0 319 222 0 0 chr4 89430056 89430146 -112898201 + (TA)n Simple_repeat Simple_repeat 2 91 0 701 189 8 8 chr4 89430148 89430275 -112898072 + MER6 DNA MER2_type 130 256 -609 185 62 0 31 chr4 89430296 89430328 -112898019 + (TAA)n Simple_repeat Simple_repeat 1 31 0 336 319 44 9 chr4 89430429 89430542 -112897805 - MIR SINE MIR -71 137 21 212 210 0 16 chr4 89431398 89431460 -112896887 + (TG)n Simple_repeat Simple_repeat 2 62 0 448 179 0 0 chr4 89431766 89431841 -112896506 - LTR40a LTR ERVL 0 519 445 1066 213 47 9 chr4 89431841 89432052 -112896295 - MLT1A2 LTR MaLR 0 374 156 1593 173 139 23 chr4 89432070 89432422 -112895925 - MSTD LTR MaLR 0 396 4 1060 279 7 27 chr4 89432617 89432914 -112895433 - LTR40b LTR ERVL -171 291 1 608 302 139 32 chr4 89433353 89433820 -112894527 + LTR33 LTR ERVL 5 521 0 417 316 190 0 chr4 89433879 89434053 -112894294 - MIR SINE MIR -51 211 5 1738 5 0 0 chr4 89434659 89434855 -112893492 - L1HS LINE L1 -212 5943 5748 * 1840 10 0 0 chr4 89434853 89435062 -112893285 + L1HS LINE L1 5945 6153 -2 264 154 0 0 chr4 89435064 89435116 -112893231 + A-rich Low_complexity Low_complexity 1 52 0 207 69 0 0 chr4 89435692 89435721 -112892626 + (A)n Simple_repeat Simple_repeat 1 29 0 14201 147 17 9 chr4 89436577 89438973 -112889374 + Tigger1 DNA MER2_type 2 2417 -1 360 261 116 63 chr4 89439086 89439293 -112889054 - LTR33 LTR ERVL -303 218 1 2060 153 46 3 chr4 89439383 89439729 -112888618 + MSTB LTR MaLR 1 361 -65 1223 180 36 5 chr4 89439734 89439956 -112888391 - AluJo SINE Alu -21 291 63 447 127 14 0 chr4 89439958 89440029 -112888318 + MSTB LTR MaLR 355 426 0 268 333 62 16 chr4 89440454 89440583 -112887764 + MIR SINE MIR 13 147 -115 372 317 35 7 chr4 89440614 89440759 -112887588 - MIR SINE MIR 0 262 114 379 197 127 63 chr4 89441475 89441539 -112886808 + L1ME2 LINE L1 6013 6072 -92 897 226 6 0 chr4 89441539 89441716 -112886631 - MER45A DNA AcHobo 0 178 1 379 197 127 63 chr4 89441716 89441793 -112886554 + L1ME2 LINE L1 6072 6163 -1 2048 127 0 0 chr4 89442068 89442359 -112885988 + AluSx SINE Alu 1 291 -21 570 75 0 0 chr4 89442886 89442966 -112885381 + L1PB3 LINE L1 6069 6148 -6 196 414 25 31 chr4 89443103 89443265 -112885082 + L3 LINE CR1 1416 1576 -1 323 243 78 10 chr4 89446236 89446339 -112882008 + MER112 DNA MER1_type 1 110 -150 242 333 105 20 chr4 89446447 89446600 -112881747 - MIR3 SINE MIR -23 185 20 350 344 68 18 chr4 89447230 89447393 -112880954 + MER5A DNA MER1_type 1 171 -18 759 143 0 172 chr4 89447462 89447671 -112880676 + Tigger1 DNA MER2_type 1 173 -2245 * 1353 112 13 39 chr4 89447642 89447875 -112880472 + Tigger1 DNA MER2_type 2192 2418 0 818 189 81 150 chr4 89447875 89448246 -112880101 + MLT1A1 LTR MaLR 21 365 0 227 204 0 20 chr4 89448255 89448304 -112880043 + L2 LINE L2 3256 3303 -10 595 245 44 13 chr4 89448406 89448565 -112879782 + MIR SINE MIR 88 251 -11 310 229 242 13 chr4 89448583 89448740 -112879607 - MIR SINE MIR -30 232 40 970 205 29 5 chr4 89449016 89449226 -112879121 - MER20 DNA MER1_type 0 219 5 22 0 0 0 chr4 89449533 89449555 -112878792 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 89449711 89449736 -112878611 + AT_rich Low_complexity Low_complexity 1 25 0 2627 42 3 0 chr4 89450123 89450429 -112877918 - AluY SINE Alu -4 307 1 410 292 83 0 chr4 89451175 89451319 -112877028 + MIR SINE MIR 107 262 0 189 107 0 0 chr4 89451454 89451482 -112876865 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 423 286 71 7 chr4 89451966 89452120 -112876227 + MIR3 SINE MIR 14 177 -31 1721 163 52 11 chr4 89452707 89453056 -112875291 - MER47A DNA MER2_type -1 365 3 23 78 0 0 chr4 89453624 89453675 -112874672 + AT_rich Low_complexity Low_complexity 1 51 0 264 273 57 74 chr4 89454573 89454914 -112873433 + MLT1J2 LTR MaLR 60 438 -12 2065 85 64 0 chr4 89455403 89455684 -112872663 - AluSc SINE Alu -10 299 1 1079 156 0 0 chr4 89456297 89456464 -112871883 - MLT1B LTR MaLR -223 167 1 625 228 13 20 chr4 89457113 89457262 -112871085 - MLT1H LTR MaLR -15 534 387 333 335 96 42 chr4 89457284 89457669 -112870678 + L2 LINE L2 1817 2222 -1092 402 341 63 42 chr4 89458041 89458422 -112869925 - L2 LINE L2 0 3313 2925 189 0 0 0 chr4 89459270 89459291 -112869056 + (TTA)n Simple_repeat Simple_repeat 1 21 0 2665 169 83 11 chr4 89459291 89459848 -112868499 - L1MC2 LINE L1 -32 6312 5716 301 206 0 16 chr4 89459947 89460010 -112868337 - MLT1K LTR MaLR -2 586 525 4349 160 21 9 chr4 89460663 89461585 -112866762 - L1MA5 LINE L1 -239 6061 5132 311 188 0 0 chr4 89461575 89461644 -112866703 + L1MA5 LINE L1 5070 5138 -1008 * 1033 157 0 33 chr4 89461641 89461682 -112866665 + L1 LINE L1 4849 4890 -1256 2196 144 28 17 chr4 89461682 89462042 -112866305 - THE1B LTR MaLR 0 364 1 1033 157 0 33 chr4 89462042 89462210 -112866137 + L1 LINE L1 4890 5051 -1095 591 278 37 21 chr4 89462220 89462411 -112865936 - L2 LINE L2 -30 3283 3090 4196 172 54 15 chr4 89464369 89464936 -112863411 - L1PA16 LINE L1 -6 6160 5616 2141 132 0 3 chr4 89464936 89465232 -112863115 - AluSx SINE Alu -17 295 1 4196 172 54 15 chr4 89465232 89465446 -112862901 - L1PA16 LINE L1 -550 5616 5412 1937 155 3 10 chr4 89465446 89465750 -112862597 - AluJo SINE Alu -4 308 7 4196 172 54 15 chr4 89465750 89465767 -112862580 - L1PA16 LINE L1 -754 5412 5397 1960 117 14 0 chr4 89465767 89466058 -112862289 - L1PA15 LINE L1 0 6165 5871 4196 172 54 15 chr4 89466058 89466554 -112861793 - L1PA16 LINE L1 -769 5397 4820 220 329 76 0 chr4 89466569 89466648 -112861699 - MIR SINE MIR -155 107 23 31 68 0 0 chr4 89467101 89467160 -112861187 + AT_rich Low_complexity Low_complexity 1 59 0 1460 171 34 23 chr4 89467160 89467424 -112860923 - AluJb SINE Alu -45 267 1 181 376 60 8 chr4 89469103 89469220 -112859127 - L2 LINE L2 0 3272 3150 282 326 129 14 chr4 89469461 89469608 -112858739 - L2 LINE L2 0 3272 3109 367 286 0 19 chr4 89469690 89469795 -112858552 + L2 LINE L2 3207 3309 -4 1262 240 67 52 chr4 89469838 89470333 -112858014 - MLT1D LTR MaLR -3 502 1 1703 144 12 68 chr4 89470589 89470915 -112857432 - AluJb SINE Alu -1 311 4 210 349 119 16 chr4 89473103 89473229 -112855118 - L2 LINE L2 -1 3271 3133 24 32 0 0 chr4 89473661 89473692 -112854655 + AT_rich Low_complexity Low_complexity 1 31 0 336 374 112 49 chr4 89473779 89474145 -112854202 - L2 LINE L2 -39 3233 2845 1543 176 225 12 chr4 89474322 89474736 -112853611 - MLT1D LTR MaLR -3 502 1 1701 230 42 52 chr4 89474816 89475267 -112853080 + L1ME2 LINE L1 5618 6065 -99 2219 94 3 7 chr4 89475267 89475564 -112852783 + AluSc SINE Alu 1 296 -13 1701 230 42 52 chr4 89475564 89475656 -112852691 + L1ME2 LINE L1 6065 6156 -8 282 29 0 0 chr4 89476388 89476423 -112851924 + (GA)n Simple_repeat Simple_repeat 2 36 0 1246 77 0 0 chr4 89476427 89476582 -112851765 - AluY SINE Alu -38 273 119 881 112 0 0 chr4 89476609 89476734 -112851613 - AluSq/x SINE Alu -187 125 1 1235 146 24 9 chr4 89477044 89477257 -112851090 + L1PA8 LINE L1 5956 6171 -1 2287 88 3 0 chr4 89477268 89477553 -112850794 + AluSp SINE Alu 9 294 -19 598 225 70 53 chr4 89478620 89478807 -112849540 + MIR SINE MIR 69 258 -4 1175 111 16 0 chr4 89478905 89479095 -112849252 - L1MA5 LINE L1 0 6300 6108 583 262 48 43 chr4 89479672 89479882 -112848465 + MIR SINE MIR 12 222 -40 229 329 174 13 chr4 89480453 89480602 -112847745 - MIR SINE MIR -13 249 77 407 286 95 37 chr4 89480682 89480871 -112847476 + MIR SINE MIR 20 219 -43 360 298 92 8 chr4 89480859 89480990 -112847357 + MIR SINE MIR 31 172 -90 * 340 295 67 26 chr4 89481485 89481678 -112846669 + MLT1J1 LTR MaLR 99 299 -147 22 0 0 0 chr4 89482413 89482435 -112845912 + AT_rich Low_complexity Low_complexity 1 22 0 441 233 83 0 chr4 89483171 89483304 -112845043 + Charlie4 DNA MER1_type 1818 1961 0 2234 105 0 3 chr4 89483570 89483864 -112844483 + AluSq SINE Alu 2 294 -19 370 293 78 48 chr4 89484514 89484681 -112843666 - MER5B DNA MER1_type -2 176 5 2394 95 0 0 chr4 89485194 89485498 -112842849 - AluSx SINE Alu -8 304 1 1013 210 89 28 chr4 89485571 89485947 -112842400 - LTR16A1 LTR ERVL 0 457 6 2182 116 3 3 chr4 89487681 89487982 -112840365 - AluSx SINE Alu -11 301 1 204 226 113 0 chr4 89488502 89488564 -112839783 - MIR3 SINE MIR -37 171 103 313 271 72 0 chr4 89488628 89488758 -112839589 - MIR SINE MIR -55 207 65 302 288 45 0 chr4 89488989 89489100 -112839247 + L1ME4a LINE L1 5978 6093 -28 407 252 39 0 chr4 89489103 89489206 -112839141 + MIR SINE MIR 85 191 -71 27 73 0 0 chr4 89489311 89489366 -112838981 + AT_rich Low_complexity Low_complexity 1 55 0 22 35 0 0 chr4 89492119 89492148 -112836199 + AT_rich Low_complexity Low_complexity 1 29 0 383 149 255 50 chr4 89492315 89492456 -112835891 - MER96 DNA MER1_type? -3 172 3 2189 103 0 0 chr4 89493029 89493336 -112835011 + AluSc SINE Alu 1 307 0 1986 112 29 4 chr4 89493341 89493645 -112834702 + AluSx SINE Alu 1 311 0 877 172 7 7 chr4 89493649 89493800 -112834547 + AluJo SINE Alu 1 151 -161 2118 122 3 25 chr4 89494550 89494869 -112833478 + AluSx SINE Alu 1 312 0 1070 30 22 37 chr4 89496365 89496499 -112831848 - AluY SINE Alu -179 132 1 1983 139 7 10 chr4 89496819 89497129 -112831218 - AluSg SINE Alu -1 309 1 1602 220 45 24 chr4 89497826 89498290 -112830057 - MARNA DNA Mariner -39 547 74 1315 197 59 3 chr4 89498289 89498579 -112829768 + MER58B DNA MER1_type 19 324 -17 * 653 231 44 30 chr4 89498726 89498929 -112829418 + L1ME LINE L1 5585 5790 -380 327 282 45 0 chr4 89499037 89499147 -112829200 + MIR SINE MIR 148 262 0 1683 137 34 8 chr4 89499344 89499607 -112828740 + AluJb SINE Alu 35 304 -8 1866 109 0 0 chr4 89499897 89500145 -112828202 + AluSq SINE Alu 2 249 -64 963 163 4 90 chr4 89500786 89500966 -112827381 - MLT1A1 LTR MaLR -3 362 207 1745 131 77 4 chr4 89500966 89501240 -112827107 - AluSx SINE Alu -18 294 1 963 163 4 90 chr4 89501240 89501304 -112827043 - MLT1A1 LTR MaLR -158 207 139 21 57 0 0 chr4 89502306 89502341 -112826006 + AT_rich Low_complexity Low_complexity 1 35 0 1237 155 5 50 chr4 89502593 89502812 -112825535 + AluJb SINE Alu 1 209 -103 198 217 22 0 chr4 89502980 89503026 -112825321 + L2 LINE L2 3266 3312 -1 2403 96 3 0 chr4 89503065 89503377 -112824970 - AluSq SINE Alu 0 313 1 403 260 143 61 chr4 89503393 89503474 -112824873 - L1ME4a LINE L1 -214 5907 5834 1977 144 0 3 chr4 89503474 89503779 -112824568 - AluJo SINE Alu -8 304 1 403 260 143 61 chr4 89503779 89503928 -112824419 - L1ME4a LINE L1 -287 5834 5658 1834 124 11 4 chr4 89504048 89504346 -112824001 - AluSx SINE Alu 0 306 7 401 301 22 0 chr4 89504556 89504692 -112823655 - L2 LINE L2 -913 2401 2263 211 328 15 15 chr4 89504782 89504849 -112823498 - MIR3 SINE MIR -139 69 3 1659 175 38 0 chr4 89506186 89506477 -112821870 + AluJb SINE Alu 1 302 -10 2243 180 121 8 chr4 89506663 89507281 -112821066 - Charlie1 DNA MER1_type 0 2761 2074 482 256 16 0 chr4 89507294 89507419 -112820928 - Charlie1a DNA MER1_type -1328 127 1 433 230 0 0 chr4 89508254 89508367 -112819980 + G-rich Low_complexity Low_complexity 1 113 0 211 227 0 0 chr4 89508395 89508439 -112819908 + (TG)n Simple_repeat Simple_repeat 1 44 0 302 198 54 0 chr4 89508626 89508737 -112819610 + (TA)n Simple_repeat Simple_repeat 2 118 0 460 102 0 0 chr4 89509795 89509854 -112818493 + AluSq SINE Alu 5 63 -255 1821 110 12 4 chr4 89509876 89510131 -112818216 + AluSq SINE Alu 53 309 -4 2639 186 75 75 chr4 89510646 89511472 -112816875 + LTR1B LTR ERV1 1 826 0 22 35 0 0 chr4 89511518 89511547 -112816800 + AT_rich Low_complexity Low_complexity 1 29 0 1506 172 0 48 chr4 89512779 89513069 -112815278 + AluJo SINE Alu 10 285 -27 264 242 81 24 chr4 89515703 89515827 -112812520 - L1ME4a LINE L1 -1 6120 5990 971 185 11 11 chr4 89515971 89516155 -112812192 - AluJb SINE Alu -25 287 104 181 263 45 128 chr4 89518134 89518267 -112810080 - L2 LINE L2 -466 2848 2727 209 250 33 0 chr4 89518681 89518741 -112809606 + MIR SINE MIR 91 152 -110 912 96 7 12 chr4 89518887 89519026 -112809321 - L1PB1 LINE L1 -651 5500 5366 * 3212 105 0 0 chr4 89519024 89519508 -112808839 + L1PB1 LINE L1 5496 5979 -172 4377 116 0 1 chr4 89519026 89519679 -112808668 + L1PB1 LINE L1 5496 6149 -2 912 96 7 12 chr4 89519679 89519699 -112808648 - L1P2 LINE L1 -785 5366 5347 334 270 17 43 chr4 89520421 89520536 -112807811 + L1M LINE L1 5313 5424 -697 33 56 0 0 chr4 89520551 89520605 -112807742 + AT_rich Low_complexity Low_complexity 1 54 0 509 317 31 16 chr4 89520858 89521177 -112807170 + L1MC4a LINE L1 4729 5052 -1094 242 179 83 65 chr4 89521369 89521537 -112806810 + L1MC4a LINE L1 5261 5431 -2377 2211 159 46 1 chr4 89521537 89522071 -112806276 - MER6A DNA MER2_type 0 605 1 1226 274 64 12 chr4 89522073 89522558 -112805789 + L1MC4a LINE L1 5450 5959 -1849 281 236 34 56 chr4 89522694 89522783 -112805564 + L1MC4a LINE L1 6062 6148 -1660 1991 134 3 0 chr4 89522952 89523242 -112805105 + AluSx SINE Alu 13 303 -9 535 145 319 0 chr4 89523924 89524062 -112804285 - MER5A DNA MER1_type -1 188 7 496 231 47 106 chr4 89524094 89524192 -112804155 + MER112 DNA MER1_type 17 119 -141 1906 92 88 0 chr4 89524192 89524504 -112803843 - AluSq SINE Alu 0 335 1 496 231 47 106 chr4 89524504 89524660 -112803687 + MER112 DNA MER1_type 119 257 -3 499 262 46 68 chr4 89524688 89524925 -112803422 - MIR SINE MIR 0 262 31 * 697 288 83 21 chr4 89524923 89525163 -112803184 + MIR SINE MIR 8 262 0 183 308 0 0 chr4 89526579 89526631 -112801716 + MIR SINE MIR 82 133 -75 1565 12 0 0 chr4 89531412 89531581 -112796766 - AluYa5 SINE Alu -142 169 1 280 170 0 0 chr4 89531597 89531644 -112796703 + LTR40a LTR ERVL 473 519 0 625 226 42 6 chr4 89531644 89531812 -112796535 - L1ME2 LINE L1 -254 5910 5737 25 31 0 0 chr4 89532297 89532329 -112796018 + AT_rich Low_complexity Low_complexity 1 32 0 862 236 65 19 chr4 89532896 89533112 -112795235 + MIR SINE MIR 11 236 -26 262 88 0 35 chr4 89533961 89534018 -112794329 + (TAG)n Simple_repeat Simple_repeat 1 55 0 363 167 0 0 chr4 89534789 89534855 -112793492 + (TA)n Simple_repeat Simple_repeat 1 66 0 2289 87 7 16 chr4 89535219 89535528 -112792819 - AluSq SINE Alu -7 306 1 744 261 50 50 chr4 89536071 89536270 -112792077 + MIR SINE MIR 2 200 -62 186 313 94 0 chr4 89536307 89536371 -112791976 + L2 LINE L2 3243 3312 -1 278 356 8 34 chr4 89536642 89536760 -112791587 - MIR3 SINE MIR -7 201 87 5265 207 103 39 chr4 89536920 89537572 -112790775 - L1MC4 LINE L1 -3 8039 7430 1747 181 3 3 chr4 89537572 89537865 -112790482 - AluJb SINE Alu -19 293 1 5265 207 103 39 chr4 89537865 89538798 -112789549 - L1MC4 LINE L1 -612 7430 6352 3206 221 65 19 chr4 89538795 89539722 -112788625 - L1ME2 LINE L1 -10 6154 5200 * 3969 134 13 6 chr4 89539730 89540363 -112787984 - L1PA15 LINE L1 -2 6163 5527 14367 217 28 11 chr4 89540363 89543024 -112785323 - L1PA15 LINE L1 -1181 4965 2233 4791 102 74 55 chr4 89543024 89543835 -112784512 - LTR12 LTR ERV1 0 826 1 14367 217 28 11 chr4 89543835 89544560 -112783787 - L1PA15 LINE L1 -3913 2233 1522 314 184 11 81 chr4 89546154 89546241 -112782106 + MIR3 SINE MIR 128 208 0 227 306 194 0 chr4 89546233 89546331 -112782016 + L2 LINE L2 3197 3313 0 * 1092 284 78 68 chr4 89546336 89547312 -112781035 + L2 LINE L2 2322 3313 0 414 0 0 0 chr4 89548869 89548950 -112779397 + (TA)n Simple_repeat Simple_repeat 1 127 0 414 0 0 0 chr4 89548950 89548996 -112779351 + (TA)n Simple_repeat Simple_repeat 1 46 0 1921 134 65 16 chr4 89549017 89549338 -112779009 + MER1B DNA MER1_type 1 337 0 2140 41 4 4 chr4 89549367 89549635 -112778712 - L1PA5 LINE L1 -1 6153 5886 761 23 0 0 chr4 89549635 89549723 -112778624 + L1PA5 LINE L1 5808 5895 -260 1689 191 2 65 chr4 89550274 89550673 -112777674 + MLT1A2 LTR MaLR 1 374 0 715 239 161 12 chr4 89550719 89550974 -112777373 + LTR16A1 LTR ERVL 164 456 -1 213 132 0 0 chr4 89551462 89551500 -112776847 + (CA)n Simple_repeat Simple_repeat 1 38 0 431 339 18 32 chr4 89551613 89551834 -112776513 + L2 LINE L2 2588 2805 -509 203 352 55 45 chr4 89551829 89552119 -112776228 + L2 LINE L2 2931 3223 -90 * 34 42 0 0 chr4 89553634 89553682 -112774665 + AT_rich Low_complexity Low_complexity 1 48 0 295 187 220 0 chr4 89553841 89553932 -112774415 - MER117 DNA MER1_type -48 149 39 1372 161 56 11 chr4 89554354 89554640 -112773707 + L1MA8 LINE L1 5987 6285 -6 315 313 55 12 chr4 89555674 89555837 -112772510 + MLT1K LTR MaLR 86 255 -333 232 242 97 16 chr4 89555976 89556100 -112772247 + L1M4 LINE L1 5063 5196 -950 6670 274 42 53 chr4 89556193 89558941 -112769406 + L1PA12 LINE L1 4 2721 -4860 1403 88 0 52 chr4 89558942 89559136 -112769211 + AluY SINE Alu 1 184 -127 183 80 0 0 chr4 89560408 89560433 -112767914 + (A)n Simple_repeat Simple_repeat 1 25 0 301 327 65 59 chr4 89561889 89562123 -112766224 + MIR3 SINE MIR 2 255 -7 2347 106 6 0 chr4 89562864 89563212 -112765135 - AluSq SINE Alu 0 350 1 267 297 0 0 chr4 89564808 89564882 -112763465 - MIR SINE MIR -29 233 160 270 243 0 0 chr4 89565047 89565117 -112763230 + L1MC4 LINE L1 6634 6703 -1339 344 273 23 0 chr4 89565129 89565217 -112763130 + L1MC4 LINE L1 6614 6703 -1339 387 0 0 0 chr4 89565224 89565267 -112763080 + (GA)n Simple_repeat Simple_repeat 1 43 0 963 167 0 12 chr4 89569279 89569441 -112758906 - FRAM SINE Alu -2 164 5 192 77 0 0 chr4 89569857 89569883 -112758464 + (GAAAA)n Simple_repeat Simple_repeat 1 26 0 293 377 48 20 chr4 89570614 89570760 -112757587 + MIR SINE MIR 20 169 -93 2282 62 48 0 chr4 89572002 89572291 -112756056 - AluY SINE Alu -8 303 1 1290 77 0 0 chr4 89572492 89572662 -112755685 + AluY SINE Alu 141 310 -1 915 256 109 14 chr4 89572664 89573024 -112755323 - LTR40a LTR ERVL -68 394 1 819 222 56 21 chr4 89573024 89573258 -112755089 + L1ME2 LINE L1 5906 6147 -17 24 53 0 0 chr4 89573531 89573569 -112754778 + AT_rich Low_complexity Low_complexity 1 38 0 29 0 0 0 chr4 89573590 89573619 -112754728 + AT_rich Low_complexity Low_complexity 1 29 0 34 0 0 0 chr4 89573711 89573745 -112754602 + AT_rich Low_complexity Low_complexity 1 34 0 1605 136 40 0 chr4 89573748 89573998 -112754349 - AluSx SINE Alu -18 294 35 239 192 51 51 chr4 89575355 89575433 -112752914 + MER116 DNA Mariner 3 80 0 192 405 116 16 chr4 89576538 89576659 -112751688 + L2 LINE L2 3139 3271 -1 255 239 34 162 chr4 89577533 89577767 -112750580 + L2 LINE L2 3109 3312 -1 252 130 0 0 chr4 89578828 89578874 -112749473 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 211 327 77 45 chr4 89581946 89582102 -112746245 + MIR SINE MIR 21 181 -81 453 244 0 0 chr4 89582446 89582536 -112745811 - L2 LINE L2 0 3313 3224 1000 173 31 71 chr4 89584055 89584281 -112744066 + MER20 DNA MER1_type 2 218 -1 540 177 0 26 chr4 89585139 89585252 -112743095 - MIR SINE MIR -49 213 104 195 301 136 34 chr4 89585260 89585436 -112742911 + L2 LINE L2 2568 2761 -553 1611 181 45 0 chr4 89587387 89587675 -112740672 - AluJb SINE Alu -11 301 1 244 294 0 43 chr4 89588125 89588217 -112740130 + MIR SINE MIR 170 257 -5 300 322 33 0 chr4 89588995 89589085 -112739262 + MER91A DNA MER1_type 4 96 -100 436 289 58 8 chr4 89589134 89589255 -112739092 + MIR SINE MIR 23 149 -113 180 275 156 72 chr4 89589500 89589667 -112738680 - MER5A DNA MER1_type -3 186 6 421 339 49 13 chr4 89591042 89591266 -112737081 + MIR SINE MIR 24 255 -7 277 139 0 0 chr4 89591992 89592035 -112736312 + LTR16C LTR ERVL 433 475 -16 234 0 0 0 chr4 89592062 89592088 -112736259 + (T)n Simple_repeat Simple_repeat 1 26 0 460 273 52 26 chr4 89592530 89592724 -112735623 - LTR16C LTR ERVL -42 449 251 227 333 12 0 chr4 89593221 89593305 -112735042 + MLT1K LTR MaLR 500 584 -4 652 221 128 41 chr4 89594580 89594756 -112733591 - MIR SINE MIR -22 240 44 1848 187 52 48 chr4 89594756 89595141 -112733206 + MLT1C LTR MaLR 5 395 -72 2110 106 3 7 chr4 89595141 89595472 -112732875 + AluSp SINE Alu 1 330 0 1848 187 52 48 chr4 89595472 89595546 -112732801 + MLT1C LTR MaLR 395 467 0 652 221 128 41 chr4 89595546 89595564 -112732783 - MIR SINE MIR -218 44 29 393 123 0 0 chr4 89596078 89596143 -112732204 + (GGA)n Simple_repeat Simple_repeat 2 66 0 227 274 32 6 chr4 89596270 89596427 -112731920 + GA-rich Low_complexity Low_complexity 1 161 0 240 214 0 0 chr4 89596440 89596496 -112731851 + GA-rich Low_complexity Low_complexity 2 57 0 22 56 0 0 chr4 89597064 89597100 -112731247 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr4 89597371 89597395 -112730952 + AT_rich Low_complexity Low_complexity 1 24 0 2381 29 18 0 chr4 89597553 89597834 -112730513 - L1PA3 LINE L1 0 6155 5870 244 354 63 0 chr4 89599405 89599532 -112728815 - L2 LINE L2 -7 3306 3172 1027 152 0 0 chr4 89599532 89599677 -112728670 + AluJb SINE Alu 148 292 -20 28 0 0 0 chr4 89599677 89599705 -112728642 + AT_rich Low_complexity Low_complexity 1 28 0 38375 87 6 8 chr4 89600029 89606189 -112722158 + L1PA6 LINE L1 11 6153 -1 1625 163 43 11 chr4 89606645 89607013 -112721334 - Charlie5 DNA MER1_type 0 2623 2244 321 233 92 33 chr4 89607033 89607153 -112721194 - MER3 DNA MER1_type -42 167 41 269 300 14 0 chr4 89607638 89607708 -112720639 - MARNA DNA Mariner -85 501 431 213 407 0 0 chr4 89608146 89608232 -112720115 - MER5A DNA MER1_type -6 183 98 1927 160 7 0 chr4 89609060 89609367 -112718980 - AluSp SINE Alu -4 309 1 226 252 68 87 chr4 89609539 89609642 -112718705 - MIR SINE MIR -64 144 44 2377 74 0 7 chr4 89611255 89611565 -112716782 + AluY SINE Alu 1 308 -3 2328 77 10 0 chr4 89611792 89612090 -112716257 - AluY SINE Alu -10 301 1 1968 85 16 0 chr4 89612200 89612458 -112715889 - AluSc SINE Alu -3 306 45 1662 93 20 8 chr4 89612510 89612757 -112715590 + L1PA8A LINE L1 5882 6131 0 600 191 181 11 chr4 89612935 89613123 -112715224 + L1MC4a LINE L1 6269 6488 -1320 4350 217 75 5 chr4 89613131 89614195 -112714152 + L1MC4a LINE L1 6670 7808 0 212 190 35 0 chr4 89614791 89614849 -112713498 + GA-rich Low_complexity Low_complexity 2 61 0 900 202 0 21 chr4 89618067 89618255 -112710092 - MER105 DNA DNA -19 185 2 229 277 34 42 chr4 89618310 89618429 -112709918 + MIR3 SINE MIR 86 203 -5 1253 88 0 6 chr4 89618825 89618995 -112709352 + AluY SINE Alu 125 293 -18 33 0 0 0 chr4 89618995 89619028 -112709319 + AT_rich Low_complexity Low_complexity 1 33 0 597 115 58 6 chr4 89619028 89619754 -112708593 + (TA)n Simple_repeat Simple_repeat 1 763 0 367 278 62 64 chr4 89620476 89620686 -112707661 - MER20B DNA MER1_type -4 215 3 852 92 21 7 chr4 89621809 89621950 -112706397 + (TTTC)n Simple_repeat Simple_repeat 4 146 0 21 0 0 0 chr4 89622433 89622454 -112705893 + AT_rich Low_complexity Low_complexity 1 21 0 314 341 75 12 chr4 89623218 89623391 -112704956 - MIR SINE MIR -3 259 76 307 282 57 7 chr4 89623476 89623624 -112704723 - MIR SINE MIR -33 229 70 2301 96 3 3 chr4 89624370 89624682 -112703665 - AluSx SINE Alu 0 312 1 196 167 42 21 chr4 89624918 89624966 -112703381 + L2 LINE L2 3265 3313 0 216 245 0 0 chr4 89625219 89625272 -112703075 + (TG)n Simple_repeat Simple_repeat 2 54 0 186 296 28 28 chr4 89626498 89626569 -112701778 + L2 LINE L2 3175 3245 -27 21 0 0 0 chr4 89626631 89626652 -112701695 + AT_rich Low_complexity Low_complexity 1 21 0 2355 44 10 14 chr4 89627653 89627949 -112700398 + AluY SINE Alu 1 295 -16 21 36 0 0 chr4 89628238 89628266 -112700081 + AT_rich Low_complexity Low_complexity 1 28 0 527 376 13 0 chr4 89628331 89628565 -112699782 + MIR SINE MIR 19 255 -7 38 51 0 0 chr4 89628699 89628758 -112699589 + AT_rich Low_complexity Low_complexity 1 59 0 614 283 76 27 chr4 89628790 89629074 -112699273 - MLT1J1 LTR MaLR -84 362 47 195 368 28 28 chr4 89629211 89629317 -112699030 - L2 LINE L2 -165 3107 3002 561 287 97 5 chr4 89630030 89630246 -112698101 + MIR SINE MIR 24 259 -3 1696 167 17 15 chr4 89631194 89631544 -112696803 - L1MB8 LINE L1 -290 5888 5572 24 0 0 0 chr4 89632676 89632700 -112695647 + AT_rich Low_complexity Low_complexity 1 24 0 225 299 107 75 chr4 89634809 89634955 -112693392 - MIR SINE MIR -10 252 97 7530 30 2 0 chr4 89634955 89636109 -112692238 + L1PA3 LINE L1 5000 6155 0 225 299 107 75 chr4 89636109 89636149 -112692198 - MIR SINE MIR -165 97 60 22 0 0 0 chr4 89637117 89637139 -112691208 + AT_rich Low_complexity Low_complexity 1 22 0 2133 106 0 0 chr4 89638121 89638426 -112689921 + AluSg SINE Alu 1 305 0 203 103 26 0 chr4 89639233 89639272 -112689075 + CT-rich Low_complexity Low_complexity 2 41 0 226 357 50 66 chr4 89639329 89639587 -112688760 - L2 LINE L2 -86 3186 2933 208 255 20 0 chr4 89640052 89640103 -112688244 + L2 LINE L2 3216 3267 -5 271 228 161 54 chr4 89640697 89640846 -112687501 + MIR3 SINE MIR 37 201 -7 686 143 0 34 chr4 89641657 89641832 -112686515 + (TTCC)n Simple_repeat Simple_repeat 1 169 0 2240 117 0 0 chr4 89641832 89642163 -112686184 - AluSx SINE Alu 0 312 1 1867 172 0 3 chr4 89642535 89642849 -112685498 - AluSq SINE Alu 0 313 1 408 304 98 52 chr4 89643793 89644231 -112684116 + L1ME4a LINE L1 5607 6064 -57 1991 153 3 7 chr4 89644718 89645026 -112683321 - AluSx SINE Alu -5 307 1 25 31 0 0 chr4 89645037 89645069 -112683278 + AT_rich Low_complexity Low_complexity 1 32 0 703 239 91 10 chr4 89645097 89645306 -112683041 + MIR SINE MIR 37 262 0 24 32 0 0 chr4 89645688 89645719 -112682628 + AT_rich Low_complexity Low_complexity 1 31 0 1011 160 0 16 chr4 89645859 89646046 -112682301 - L1MA6 LINE L1 -4 6296 6113 1806 127 41 0 chr4 89646289 89646557 -112681790 - AluSx SINE Alu -33 279 1 21 0 0 0 chr4 89647411 89647432 -112680915 + AT_rich Low_complexity Low_complexity 1 21 0 232 262 262 0 chr4 89647495 89647602 -112680745 + MIR SINE MIR 46 180 -82 1747 166 62 16 chr4 89647620 89647993 -112680354 + MLT1B LTR MaLR 1 390 0 35 0 0 0 chr4 89648060 89648095 -112680252 + AT_rich Low_complexity Low_complexity 1 35 0 799 178 18 93 chr4 89648132 89648296 -112680051 + MER3 DNA MER1_type 1 145 -64 1640 145 0 39 chr4 89648296 89648578 -112679769 + AluSx SINE Alu 24 294 -18 799 178 18 93 chr4 89648578 89648638 -112679709 + MER3 DNA MER1_type 145 208 -1 642 311 57 10 chr4 89649517 89649726 -112678621 + LTR33 LTR ERVL 6 224 -297 262 356 0 29 chr4 89650706 89650810 -112677537 - L2 LINE L2 -4 3309 3209 685 304 83 0 chr4 89650963 89651180 -112677167 + MIR SINE MIR 1 235 -27 25 31 0 0 chr4 89651180 89651212 -112677135 + AT_rich Low_complexity Low_complexity 1 32 0 301 279 87 19 chr4 89651484 89651588 -112676759 - MIR SINE MIR -42 220 110 255 338 156 17 chr4 89652609 89652846 -112675501 - L3 LINE CR1 -2 1575 1306 211 218 91 0 chr4 89652868 89652923 -112675424 - MIR SINE MIR -2 260 201 231 241 95 44 chr4 89653119 89653256 -112675091 + L1ME4a LINE L1 5975 6118 -3 1523 193 3 30 chr4 89653292 89653587 -112674760 - AluJb SINE Alu -25 287 1 1024 224 87 47 chr4 89653739 89654164 -112674183 + MLT1C LTR MaLR 13 467 0 4581 152 72 3 chr4 89655219 89656817 -112671530 - L1PA13 LINE L1 -5 6158 4400 2800 28 0 0 chr4 89657249 89657567 -112670780 - AluYb8 SINE Alu 0 318 1 218 217 29 14 chr4 89657577 89657646 -112670701 + L2 LINE L2 3118 3187 -126 657 260 101 13 chr4 89658041 89658268 -112670079 + MIR SINE MIR 1 247 -15 300 387 78 0 chr4 89658346 89658488 -112669859 + MIR3 SINE MIR 49 201 -7 335 364 19 25 chr4 89661453 89661615 -112666732 + MIR SINE MIR 12 172 -90 665 304 65 34 chr4 89661751 89662044 -112666303 + L2 LINE L2 3012 3313 0 309 26 0 0 chr4 89663021 89663059 -112665288 + (TG)n Simple_repeat Simple_repeat 1 38 0 397 331 99 0 chr4 89663303 89663475 -112664872 - MIR SINE MIR -37 225 37 326 336 22 22 chr4 89663907 89664041 -112664306 - MIR SINE MIR -109 153 20 578 267 53 67 chr4 89664399 89664624 -112663723 + MIR SINE MIR 41 262 0 451 283 263 32 chr4 89665006 89665481 -112662866 - L2 LINE L2 -241 3031 2445 39 0 0 0 chr4 89665545 89665584 -112662763 + AT_rich Low_complexity Low_complexity 1 39 0 237 33 0 0 chr4 89666847 89666877 -112661470 + (GA)n Simple_repeat Simple_repeat 2 31 0 2245 110 0 0 chr4 89667489 89667790 -112660557 - AluSc SINE Alu -8 301 1 23 33 0 0 chr4 89668025 89668055 -112660292 + AT_rich Low_complexity Low_complexity 1 30 0 1879 161 0 0 chr4 89668793 89669079 -112659268 - AluSx SINE Alu -26 286 1 186 194 0 0 chr4 89669562 89669593 -112658754 + L2 LINE L2 3271 3301 -12 965 288 57 32 chr4 89669781 89670035 -112658312 - L2 LINE L2 -606 2708 2439 719 249 88 19 chr4 89670035 89670240 -112658107 + MER20 DNA MER1_type 1 219 0 965 288 57 32 chr4 89670240 89670388 -112657959 - L2 LINE L2 -875 2439 2296 2226 103 3 0 chr4 89671540 89671842 -112656505 + AluSg SINE Alu 1 303 -7 43563 42 5 2 chr4 89672543 89678668 -112649679 - L1PA3 LINE L1 0 6155 9 227 277 36 12 chr4 89679351 89679434 -112648913 - L2 LINE L2 0 3313 3229 306 339 83 43 chr4 89679694 89679995 -112648352 - L2 LINE L2 -447 2867 2555 222 329 0 0 chr4 89680544 89680614 -112647733 + (TATG)n Simple_repeat Simple_repeat 4 73 0 470 17 0 17 chr4 89680669 89680729 -112647618 + (TA)n Simple_repeat Simple_repeat 1 59 0 374 216 36 45 chr4 89681942 89682053 -112646294 + MER5A DNA MER1_type 80 189 0 196 184 0 41 chr4 89682457 89682506 -112645841 + L2 LINE L2 3262 3308 -5 191 179 51 0 chr4 89684651 89684690 -112643657 - MIR SINE MIR -119 89 49 617 174 275 7 chr4 89684704 89684853 -112643494 - MER5A DNA MER1_type 0 189 1 284 235 25 62 chr4 89685173 89685254 -112643093 - MIR SINE MIR -165 97 20 1043 222 46 0 chr4 89688457 89688673 -112639674 + AluJo SINE Alu 86 311 -1 1771 181 3 3 chr4 89688694 89688998 -112639349 + AluJo SINE Alu 1 304 -8 2635 143 100 43 chr4 89689504 89690065 -112638282 - LTR49 LTR ERV1 0 595 3 201 345 12 12 chr4 89690792 89690876 -112637471 - L3 LINE CR1 -106 1471 1388 240 295 0 0 chr4 89691232 89691293 -112637054 - MIR SINE MIR -136 126 66 46 0 0 0 chr4 89691373 89691419 -112636928 + AT_rich Low_complexity Low_complexity 1 46 0 720 263 91 4 chr4 89692476 89692708 -112635639 - MIR SINE MIR -8 254 3 3511 157 57 41 chr4 89694217 89694974 -112633373 - L1MB1 LINE L1 -1 6167 5399 25 31 0 0 chr4 89694974 89695006 -112633341 + AT_rich Low_complexity Low_complexity 1 32 0 2492 77 0 3 chr4 89695957 89696268 -112632079 + AluY SINE Alu 1 310 -1 266 300 0 12 chr4 89696272 89696352 -112631995 - MLT1H1-int LTR MaLR -1633 102 24 1270 253 35 35 chr4 89696364 89696736 -112631611 - MLT1H1 LTR MaLR 0 555 184 287 286 33 11 chr4 89696766 89696857 -112631490 - MLT1H1 LTR MaLR -483 107 15 210 71 0 0 chr4 89697697 89697725 -112630622 + (ATG)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr4 89697738 89697759 -112630588 + AT_rich Low_complexity Low_complexity 1 21 0 12550 225 40 20 chr4 89697883 89698420 -112629927 - L1PA16 LINE L1 -9 7595 7070 2392 94 0 3 chr4 89698420 89698719 -112629628 - AluSq SINE Alu -15 298 1 12550 225 40 20 chr4 89698719 89699985 -112628362 - L1PA16 LINE L1 -534 7070 5830 1887 155 0 23 chr4 89699985 89700295 -112628052 - AluSx SINE Alu -9 303 1 12550 225 40 20 chr4 89700295 89703812 -112624535 - L1PA16 LINE L1 -1774 5830 2170 299 325 15 14 chr4 89704026 89704237 -112624110 - L1PA16 LINE L1 -5276 2298 2084 1046 319 62 16 chr4 89704383 89704832 -112623515 - L1PA16 LINE L1 -6317 1257 788 264 316 13 0 chr4 89704996 89705072 -112623275 + L2 LINE L2 3183 3259 -54 25 0 0 0 chr4 89707764 89707789 -112620558 + AT_rich Low_complexity Low_complexity 1 25 0 1202 33 20 0 chr4 89707903 89708053 -112620294 - L1PA4 LINE L1 -261 5894 5742 527 15 0 0 chr4 89708053 89708111 -112620236 + L1PA4 LINE L1 6087 6151 -4 747 265 9 33 chr4 89709169 89709377 -112618970 - MLT1A2 LTR MaLR -4 370 168 951 189 137 0 chr4 89709377 89709589 -112618758 + MSTA LTR MaLR 1 241 -187 714 124 53 0 chr4 89709597 89709710 -112618637 - MLT1A2 LTR MaLR -252 122 4 1907 131 0 28 chr4 89709926 89710209 -112618138 + AluJb SINE Alu 10 284 -28 875 230 27 78 chr4 89710227 89710523 -112617824 + L2 LINE L2 3032 3312 -1 21 0 0 0 chr4 89710567 89710588 -112617759 + AT_rich Low_complexity Low_complexity 1 21 0 604 288 66 98 chr4 89710670 89710718 -112617629 - L2 LINE L2 -743 2571 2523 2157 128 0 3 chr4 89710718 89711030 -112617317 + AluSx SINE Alu 1 311 -1 604 288 66 98 chr4 89711030 89711328 -112617019 - L2 LINE L2 -791 2523 2236 1025 116 12 17 chr4 89711884 89712056 -112616291 - L1PB2 LINE L1 -3 6148 5978 1507 204 36 33 chr4 89714013 89714375 -112613972 + MLT1A1 LTR MaLR 3 365 0 1454 237 17 24 chr4 89714443 89714857 -112613490 - L1ME1 LINE L1 -80 6086 5676 22 0 0 0 chr4 89715233 89715255 -112613092 + AT_rich Low_complexity Low_complexity 1 22 0 256 235 106 12 chr4 89715355 89715440 -112612907 + L2 LINE L2 3219 3311 -2 433 290 28 11 chr4 89715639 89715815 -112612532 - MER104 DNA Tc2 0 180 2 30 27 0 0 chr4 89715839 89715876 -112612471 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr4 89715892 89715915 -112612432 + AT_rich Low_complexity Low_complexity 1 23 0 191 342 26 34 chr4 89716046 89716163 -112612184 + L3 LINE CR1 923 1038 -539 569 335 12 0 chr4 89716223 89716393 -112611954 - MIR SINE MIR -85 177 6 223 343 159 23 chr4 89716402 89716711 -112611636 + L3 LINE CR1 1071 1421 -156 2463 91 0 0 chr4 89717151 89717460 -112610887 - AluSg SINE Alu -1 309 1 1361 209 17 20 chr4 89717516 89717813 -112610534 - AluJo SINE Alu -16 296 1 22 0 0 0 chr4 89718812 89718834 -112609513 + AT_rich Low_complexity Low_complexity 1 22 0 620 308 28 24 chr4 89718918 89719171 -112609176 - MIR SINE MIR -3 259 6 214 370 36 7 chr4 89719247 89719385 -112608962 - L3 LINE CR1 -21 1556 1415 208 272 35 97 chr4 89719493 89719607 -112608740 - MIR SINE MIR -59 203 97 443 238 7 2 chr4 89719755 89719871 -112608476 - MLT1J2 LTR MaLR -325 186 34 580 241 14 98 chr4 89719926 89720212 -112608135 + L1M4 LINE L1 3863 4124 -2022 669 161 34 7 chr4 89720245 89720394 -112607953 + L1P LINE L1 4257 4409 -1737 22 0 0 0 chr4 89720874 89720896 -112607451 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr4 89721723 89721762 -112606585 + (CA)n Simple_repeat Simple_repeat 2 40 0 2120 63 3 85 chr4 89721777 89722093 -112606254 + AluY SINE Alu 2 291 -20 22 35 0 0 chr4 89722221 89722250 -112606097 + AT_rich Low_complexity Low_complexity 1 29 0 1792 158 13 16 chr4 89722432 89722735 -112605612 - AluJb SINE Alu -8 304 3 442 237 40 20 chr4 89722844 89722996 -112605351 - L1ME3A LINE L1 -230 5940 5786 273 260 0 14 chr4 89723476 89723549 -112604798 - MLT1-int LTR MaLR -1294 77 6 496 252 123 0 chr4 89723872 89724027 -112604320 + MIR SINE MIR 30 203 -59 2015 140 0 0 chr4 89726273 89726566 -112601781 - AluSx SINE Alu -18 294 2 293 158 40 0 chr4 89726672 89726773 -112601574 + (TA)n Simple_repeat Simple_repeat 2 106 0 23 68 0 0 chr4 89726789 89726833 -112601514 + AT_rich Low_complexity Low_complexity 1 44 0 186 194 0 0 chr4 89726857 89726919 -112601428 + (TA)n Simple_repeat Simple_repeat 2 63 0 500 287 199 0 chr4 89727255 89727471 -112600876 - L1ME3A LINE L1 -2037 5771 5513 8530 169 118 10 chr4 89727474 89730411 -112597936 - L1MA9 LINE L1 -3 7728 4425 4927 159 5 0 chr4 89730411 89731609 -112596738 - L1PA16 LINE L1 -1 6165 4949 8530 169 118 10 chr4 89731609 89731736 -112596611 - L1MA9 LINE L1 -3306 4425 4313 43231 40 6 2 chr4 89731739 89737865 -112590482 - L1PA4 LINE L1 -3 6152 1 2707 271 46 28 chr4 89737861 89740311 -112588036 - L1MA9 LINE L1 -3233 4332 2012 * 46 33 0 0 chr4 89740357 89740417 -112587930 + AT_rich Low_complexity Low_complexity 1 60 0 246 280 0 0 chr4 89740615 89740665 -112587682 + (CA)n Simple_repeat Simple_repeat 1 50 0 189 132 0 0 chr4 89740677 89740715 -112587632 + (GA)n Simple_repeat Simple_repeat 2 39 0 534 326 125 13 chr4 89741234 89741617 -112586730 - HAL1b LINE L1 -631 717 292 731 213 67 61 chr4 89745214 89745471 -112582876 - LTR49-int LTR ERV1 -3082 1798 989 511 182 0 0 chr4 89746106 89746194 -112582153 + MIR SINE MIR 98 185 -77 219 36 0 0 chr4 89746194 89746222 -112582125 + (CA)n Simple_repeat Simple_repeat 2 29 0 204 385 103 26 chr4 89746367 89746601 -112581746 + L2 LINE L2 3021 3272 0 1279 166 30 30 chr4 89747162 89747464 -112580883 + MER33 DNA MER1_type 18 319 -5 2327 198 21 52 chr4 89749577 89750153 -112578194 + MER74A LTR ERVL 1 558 0 198 322 70 35 chr4 89750206 89750321 -112578026 - L2 LINE L2 -5 3308 3190 23 33 0 0 chr4 89750617 89750647 -112577700 + AT_rich Low_complexity Low_complexity 1 30 0 709 242 11 22 chr4 89750737 89750919 -112577428 - AluJo SINE Alu -16 296 117 1175 166 61 90 chr4 89750974 89751252 -112577095 - MLT1B LTR MaLR -2 388 119 2172 192 27 56 chr4 89751264 89751917 -112576430 - MER21A LTR ERV1 -199 508 78 1980 280 79 30 chr4 89751981 89752851 -112575496 + L2 LINE L2 2230 3124 -189 2463 66 0 0 chr4 89752878 89753196 -112575151 - AluYb8 SINE Alu 0 318 1 22 0 0 0 chr4 89753202 89753224 -112575123 + AT_rich Low_complexity Low_complexity 1 22 0 2085 137 0 3 chr4 89753569 89753882 -112574465 - AluSq SINE Alu -1 312 1 383 315 16 0 chr4 89754301 89754428 -112573919 + MIR SINE MIR 132 260 -2 458 122 0 0 chr4 89754696 89754770 -112573577 - L1MA3 LINE L1 -1 6304 6231 1096 94 0 0 chr4 89754779 89754939 -112573408 - L1M LINE L1 -887 5418 5259 6741 140 25 6 chr4 89754950 89757015 -112571332 - L1MA3 LINE L1 -76 6229 4123 262 341 0 0 chr4 89757015 89757103 -112571244 - MER117 DNA MER1_type -105 92 5 25 65 0 0 chr4 89757321 89757367 -112570980 + AT_rich Low_complexity Low_complexity 1 46 0 27 49 0 0 chr4 89759459 89759500 -112568847 + AT_rich Low_complexity Low_complexity 1 41 0 231 299 58 23 chr4 89760934 89761021 -112567326 - MIR SINE MIR -59 149 60 978 206 62 20 chr4 89761353 89761659 -112566688 - MER33 DNA MER1_type -4 320 2 277 372 44 15 chr4 89761793 89761930 -112566417 - MIR SINE MIR -117 145 5 23 86 0 0 chr4 89762198 89762256 -112566091 + AT_rich Low_complexity Low_complexity 1 58 0 22 35 0 0 chr4 89762371 89762400 -112565947 + AT_rich Low_complexity Low_complexity 1 29 0 732 304 123 40 chr4 89762400 89763029 -112565318 - L2 LINE L2 0 3313 2590 405 314 38 13 chr4 89763672 89763831 -112564516 + L2 LINE L2 3151 3313 0 797 182 166 0 chr4 89763965 89764152 -112564195 - MER20 DNA MER1_type -1 218 1 39 22 0 0 chr4 89764255 89764301 -112564046 + AT_rich Low_complexity Low_complexity 1 46 0 201 316 40 0 chr4 89766228 89766304 -112562043 - L2 LINE L2 0 3272 3194 237 283 79 26 chr4 89766955 89767107 -112561240 + L1ME4a LINE L1 5729 5888 -233 1864 136 28 11 chr4 89767128 89767415 -112560932 - AluSg SINE Alu -18 292 1 874 106 65 0 chr4 89767418 89767541 -112560806 - AluSg SINE Alu -179 131 1 322 272 107 53 chr4 89767577 89767746 -112560601 + L1ME4a LINE L1 5941 6118 -3 900 262 102 32 chr4 89767839 89768370 -112559977 + L1ME4a LINE L1 5536 6103 -18 183 194 56 0 chr4 89768650 89768686 -112559661 - L2 LINE L2 -12 3301 3264 2329 79 3 3 chr4 89768769 89769074 -112559273 + AluY SINE Alu 1 305 -6 227 289 36 60 chr4 89769106 89769189 -112559158 + MIR SINE MIR 57 137 -71 642 314 75 36 chr4 89769194 89769500 -112558847 - L2 LINE L2 0 3313 2996 353 320 86 23 chr4 89770698 89770826 -112557521 - L2 LINE L2 -3 3269 3134 2146 38 0 4 chr4 89771049 89771311 -112557036 + L1PA5 LINE L1 5886 6146 -8 802 317 195 17 chr4 89771381 89772153 -112556194 - L2 LINE L2 -791 2523 1610 2192 126 3 0 chr4 89772153 89772463 -112555884 + AluSq SINE Alu 1 311 -2 421 299 45 0 chr4 89772540 89772674 -112555673 + MIR SINE MIR 116 255 -7 198 240 0 60 chr4 89772709 89772759 -112555588 + L2 LINE L2 3266 3312 -1 222 116 0 0 chr4 89773418 89773461 -112554886 + (A)n Simple_repeat Simple_repeat 1 43 0 342 0 0 0 chr4 89775531 89775569 -112552778 + (TA)n Simple_repeat Simple_repeat 1 38 0 240 289 67 67 chr4 89776263 89776353 -112551994 + L2 LINE L2 3174 3263 -9 345 319 80 24 chr4 89777402 89777637 -112550710 - LTR16A LTR ERVL -66 391 133 622 278 33 0 chr4 89777769 89777920 -112550427 - MIR SINE MIR -29 233 78 464 127 0 0 chr4 89777926 89777997 -112550350 + AluSp SINE Alu 1 71 -241 1600 113 19 27 chr4 89778020 89778277 -112550070 + AluSp SINE Alu 47 301 -12 189 0 0 0 chr4 89779272 89779293 -112549054 + (A)n Simple_repeat Simple_repeat 1 21 0 185 105 0 26 chr4 89779409 89779447 -112548900 + (TC)n Simple_repeat Simple_repeat 2 38 0 1072 179 221 4 chr4 89780657 89780937 -112547410 - MER58B DNA MER1_type 0 341 1 188 271 0 34 chr4 89781013 89781072 -112547275 - MIR SINE MIR -193 69 13 1971 149 3 10 chr4 89781446 89781748 -112546599 - AluJb SINE Alu -12 300 1 193 213 75 100 chr4 89781939 89782019 -112546328 - MIR SINE MIR -2 260 183 378 0 0 0 chr4 89782026 89782068 -112546279 + (CA)n Simple_repeat Simple_repeat 1 42 0 228 182 0 0 chr4 89782084 89782128 -112546219 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 199 253 76 38 chr4 89782142 89782221 -112546126 - MIR SINE MIR -169 93 12 367 273 188 0 chr4 89782374 89782502 -112545845 + L2 LINE L2 3121 3272 0 1533 107 19 11 chr4 89782662 89782925 -112545422 + L1MA5A LINE L1 6022 6286 -11 2190 92 13 26 chr4 89783731 89784037 -112544310 - AluSp SINE Alu -11 302 1 2464 83 0 0 chr4 89784100 89784402 -112543945 - AluY SINE Alu -9 302 1 2152 154 27 0 chr4 89784592 89784968 -112543379 - MLT1B LTR MaLR -4 386 1 189 0 0 0 chr4 89785314 89785335 -112543012 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 207 0 0 0 chr4 89785675 89785698 -112542649 + (T)n Simple_repeat Simple_repeat 1 23 0 278 368 50 20 chr4 89786032 89786233 -112542114 + L2 LINE L2 1501 1707 -1607 1127 289 88 9 chr4 89786264 89786721 -112541626 + L2 LINE L2 1661 2153 -1161 681 352 104 28 chr4 89786724 89786817 -112541530 + L2 LINE L2 2606 2690 -582 371 118 26 13 chr4 89786817 89786893 -112541454 - L1MC2 LINE L1 -11 6333 6257 681 352 104 28 chr4 89786893 89787417 -112540930 + L2 LINE L2 2690 3271 -1 183 80 0 0 chr4 89787418 89787443 -112540904 + (GGAA)n Simple_repeat Simple_repeat 2 26 0 243 0 0 0 chr4 89788157 89788184 -112540163 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1753 107 0 0 chr4 89789002 89789226 -112539121 - AluSq SINE Alu -56 257 34 1933 196 60 11 chr4 89789227 89789406 -112538941 - L1M4 LINE L1 -698 5486 5317 483 18 0 0 chr4 89789406 89789462 -112538885 + (TTA)n Simple_repeat Simple_repeat 2 57 0 1933 196 60 11 chr4 89789462 89789886 -112538461 - L1M4 LINE L1 -867 5317 4860 334 347 155 30 chr4 89790351 89790653 -112537694 + L2 LINE L2 2442 2705 -608 2831 16 0 0 chr4 89790653 89790964 -112537383 - AluY SINE Alu 0 311 1 334 347 155 30 chr4 89790964 89791208 -112537139 + L2 LINE L2 2705 3049 -264 1717 134 49 11 chr4 89791263 89791547 -112536800 - AluSx SINE Alu -17 295 1 389 230 102 66 chr4 89791942 89792138 -112536209 - MIR SINE MIR 0 262 60 221 296 0 14 chr4 89793629 89793700 -112534647 - MIR SINE MIR -75 187 118 345 193 0 0 chr4 89794365 89794422 -112533925 + AluJ/FLAM SINE Alu 1 57 -245 225 0 0 0 chr4 89794431 89794456 -112533891 + (A)n Simple_repeat Simple_repeat 1 25 0 900 173 0 0 chr4 89794468 89794618 -112533729 + AluJb SINE Alu 161 310 -2 198 0 0 0 chr4 89795062 89795084 -112533263 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 6344 52 3 0 chr4 89797079 89797862 -112530485 - L1PA5 LINE L1 0 6154 5370 2129 127 0 0 chr4 89801532 89801831 -112526516 + AluSg SINE Alu 1 299 -11 789 268 136 35 chr4 89804506 89804875 -112523472 - MLT1I LTR MaLR 0 409 4 221 296 0 14 chr4 89806134 89806205 -112522142 - MIR SINE MIR -75 187 118 360 0 0 0 chr4 89806938 89806978 -112521369 + (A)n Simple_repeat Simple_repeat 1 40 0 900 173 0 0 chr4 89806990 89807140 -112521207 + AluJb SINE Alu 161 310 -2 198 0 0 0 chr4 89807584 89807606 -112520741 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 585 195 0 18 chr4 89808701 89808814 -112519533 + FLAM_C SINE Alu 1 111 -32 538 100 40 33 chr4 89808838 89808988 -112519359 + (TA)n Simple_repeat Simple_repeat 1 151 0 827 205 0 19 chr4 89808988 89809149 -112519198 + FRAM SINE Alu 1 158 -18 2142 110 0 13 chr4 89810187 89810497 -112517850 - AluSg SINE Alu -4 306 1 2457 42 0 0 chr4 89810966 89811250 -112517097 + AluY SINE Alu 1 284 -27 222 37 0 0 chr4 89811253 89811280 -112517067 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 28 29 0 0 chr4 89811326 89811361 -112516986 + AT_rich Low_complexity Low_complexity 1 35 0 2199 96 20 3 chr4 89813118 89813411 -112514936 - AluSq SINE Alu -15 298 1 267 31 0 0 chr4 89813490 89813522 -112514825 + (CAG)n Simple_repeat Simple_repeat 1 32 0 410 209 80 126 chr4 89813593 89813832 -112514515 - L2 LINE L2 -38 3275 3048 2197 116 6 6 chr4 89814030 89814341 -112514006 - AluSx SINE Alu 0 312 2 441 245 115 51 chr4 89814718 89814935 -112513412 - L1MC4a LINE L1 -223 5898 5669 282 253 13 0 chr4 89814980 89815059 -112513288 - MER116 DNA Mariner 0 80 1 425 271 57 81 chr4 89816149 89816395 -112511952 + MIR SINE MIR 16 252 -10 3431 136 11 44 chr4 89817308 89817962 -112510385 - L1MA4 LINE L1 -4 6296 5665 311 349 26 32 chr4 89818317 89818506 -112509841 + MIR SINE MIR 20 207 -55 2270 78 0 0 chr4 89819164 89819475 -112508872 - AluSx SINE Alu 0 311 1 486 321 57 21 chr4 89821758 89821951 -112506396 - MIR SINE MIR -42 220 21 249 167 0 0 chr4 89822830 89822884 -112505463 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 415 202 211 9 chr4 89825687 89825801 -112502546 + MER5A DNA MER1_type 39 175 -14 1938 178 27 0 chr4 89826096 89826433 -112501914 + MER7A DNA MER2_type 1 344 -2 201 235 20 0 chr4 89826614 89826665 -112501682 + (CA)n Simple_repeat Simple_repeat 1 52 0 23 0 0 0 chr4 89827385 89827408 -112500939 + AT_rich Low_complexity Low_complexity 1 23 0 1920 91 0 122 chr4 89827692 89828021 -112500326 + AluSg SINE Alu 2 290 -10 438 181 24 0 chr4 89828052 89828135 -112500212 - MER34 LTR ERV1 0 542 458 215 250 0 0 chr4 89828746 89828798 -112499549 + (TA)n Simple_repeat Simple_repeat 2 53 0 240 163 0 0 chr4 89828851 89828894 -112499453 + CT-rich Low_complexity Low_complexity 3 45 0 1627 73 10 5 chr4 89828915 89829121 -112499226 - AluSg SINE Alu -103 207 1 516 298 2 36 chr4 89829836 89830005 -112498342 - MIR3 SINE MIR -3 205 37 3059 166 16 0 chr4 89830348 89830860 -112497487 - MLT2B1 LTR ERVL 0 520 1 2067 150 3 0 chr4 89830935 89831241 -112497106 - AluSx SINE Alu -3 309 3 24 53 0 0 chr4 89831281 89831319 -112497028 + AT_rich Low_complexity Low_complexity 1 38 0 372 308 15 0 chr4 89831462 89831592 -112496755 - MER94 DNA DNA 0 134 3 238 352 0 0 chr4 89832533 89832604 -112495743 + L2 LINE L2 2726 2796 -518 256 329 68 0 chr4 89834113 89834186 -112494161 - L2 LINE L2 0 3313 3236 345 295 52 65 chr4 89834297 89834558 -112493789 - L2 LINE L2 -119 3194 2938 2297 111 36 25 chr4 89834558 89834918 -112493429 - THE1B LTR MaLR 0 364 1 345 295 52 65 chr4 89834918 89835042 -112493305 - L2 LINE L2 -375 2938 2814 26 30 0 0 chr4 89836449 89836482 -112491865 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr4 89837045 89837069 -112491278 + AT_rich Low_complexity Low_complexity 1 24 0 506 315 50 28 chr4 89837648 89837829 -112490518 + MIR3 SINE MIR 16 200 -8 2290 103 0 6 chr4 89839395 89839706 -112488641 - AluSg SINE Alu -1 309 1 2166 130 0 9 chr4 89840986 89841301 -112487046 + AluSx SINE Alu 1 312 0 234 319 65 12 chr4 89842496 89842665 -112485682 - L1ME LINE L1 -288 5833 5656 353 254 46 75 chr4 89843712 89843885 -112484462 - MER91A DNA MER1_type -26 170 3 573 28 0 0 chr4 89844139 89844210 -112484137 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 230 297 22 22 chr4 89844391 89844482 -112483865 - MIR SINE MIR 0 262 172 219 62 21 42 chr4 89844693 89844741 -112483606 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 222 303 49 33 chr4 89845316 89845438 -112482909 - MIR3 SINE MIR -4 204 81 23 0 0 0 chr4 89845717 89845740 -112482607 + AT_rich Low_complexity Low_complexity 1 23 0 221 167 0 0 chr4 89846217 89846259 -112482088 + L2 LINE L2 3186 3227 -86 1878 236 8 20 chr4 89848162 89848556 -112479791 + MER21B LTR ERV1 12 400 -463 675 251 37 6 chr4 89849260 89849423 -112478924 - MER5A DNA MER1_type -21 168 1 219 114 0 0 chr4 89849794 89849829 -112478518 + (CA)n Simple_repeat Simple_repeat 2 36 0 458 227 8 25 chr4 89850014 89850133 -112478214 - MLT1K LTR MaLR -8 580 464 1399 205 73 81 chr4 89850140 89850752 -112477595 - LTR41 LTR ERVL -7 766 97 2554 51 3 3 chr4 89850752 89851063 -112477284 - AluY SINE Alu 0 311 1 1399 205 73 81 chr4 89851063 89851135 -112477212 - LTR41 LTR ERVL -676 97 26 1163 234 56 70 chr4 89851812 89852330 -112476017 + L1MD2 LINE L1 5831 6341 -18 3999 237 58 20 chr4 89852586 89853846 -112474501 + L1MC4a LINE L1 6538 7803 -5 352 256 8 8 chr4 89854080 89854205 -112474142 + GA-rich Low_complexity Low_complexity 2 126 0 2193 118 3 0 chr4 89856102 89856407 -112471940 + AluSp SINE Alu 2 307 -6 213 337 112 30 chr4 89856560 89856729 -112471618 + MIR SINE MIR 64 246 -16 23 0 0 0 chr4 89857489 89857512 -112470835 + AT_rich Low_complexity Low_complexity 1 23 0 985 145 0 24 chr4 89857526 89857692 -112470655 - AluSg/x SINE Alu 0 312 151 24 32 0 0 chr4 89858297 89858328 -112470019 + AT_rich Low_complexity Low_complexity 1 31 0 28 29 0 0 chr4 89860673 89860708 -112467639 + AT_rich Low_complexity Low_complexity 1 35 0 2329 56 0 0 chr4 89860709 89860995 -112467352 - L1PA7 LINE L1 -9 6145 5860 377 293 78 91 chr4 89863486 89863718 -112464629 + MIR SINE MIR 32 260 -2 257 286 0 39 chr4 89863819 89863896 -112464451 + MIR SINE MIR 78 151 -111 405 263 0 58 chr4 89864004 89864141 -112464206 + MIR SINE MIR 1 129 -133 23 33 0 0 chr4 89864432 89864462 -112463885 + AT_rich Low_complexity Low_complexity 1 30 0 2144 120 0 0 chr4 89865484 89865801 -112462546 + AluSx SINE Alu 1 317 0 24 32 0 0 chr4 89867208 89867239 -112461108 + AT_rich Low_complexity Low_complexity 1 31 0 2714 124 70 18 chr4 89867252 89867384 -112460963 - L1MA9 LINE L1 -5 6307 6183 311 60 20 0 chr4 89867384 89867434 -112460913 + (TA)n Simple_repeat Simple_repeat 2 52 0 2714 124 70 18 chr4 89867434 89867448 -112460899 - L1MA9 LINE L1 -129 6183 6171 2034 149 36 33 chr4 89867448 89867811 -112460536 - THE1B LTR MaLR 0 364 1 11398 100 7 8 chr4 89867811 89869393 -112458954 - THE1B-int LTR MaLR 0 1580 1 2027 142 39 28 chr4 89869393 89869753 -112458594 - THE1B LTR MaLR 0 364 1 2714 124 70 18 chr4 89869753 89870104 -112458243 - L1MA9 LINE L1 -140 6172 5781 2887 155 36 17 chr4 89870229 89871078 -112457269 - L1MA9 LINE L1 -521 5791 4922 21 36 0 0 chr4 89871584 89871612 -112456735 + AT_rich Low_complexity Low_complexity 1 28 0 350 274 150 9 chr4 89872935 89873048 -112455299 - MIR SINE MIR -63 145 17 1963 94 0 4 chr4 89873227 89873481 -112454866 + AluSx SINE Alu 1 253 -59 1177 97 7 0 chr4 89873482 89873637 -112454710 + MSTA LTR MaLR 268 423 -5 3808 139 10 3 chr4 89873640 89874235 -112454112 + L1PA15 LINE L1 5560 6158 -7 311 255 120 47 chr4 89874358 89874550 -112453797 + L1ME LINE L1 5617 5822 -299 21 0 0 0 chr4 89874551 89874572 -112453775 + AT_rich Low_complexity Low_complexity 1 21 0 1417 219 0 37 chr4 89874978 89875275 -112453072 - AluJo SINE Alu -26 286 1 236 149 0 64 chr4 89875242 89875289 -112453058 - Alu SINE Alu -135 168 125 26 30 0 0 chr4 89875295 89875328 -112453019 + AT_rich Low_complexity Low_complexity 1 33 0 228 67 0 0 chr4 89876681 89876711 -112451636 + (TTTC)n Simple_repeat Simple_repeat 1 30 0 381 234 183 10 chr4 89876730 89876927 -112451420 - L1ME4a LINE L1 -32 6089 5859 290 240 21 0 chr4 89877390 89877486 -112450861 + CT-rich Low_complexity Low_complexity 3 100 0 2195 125 3 6 chr4 89878399 89878712 -112449635 + AluSx SINE Alu 1 312 0 297 272 74 0 chr4 89879572 89879653 -112448694 + MIR SINE MIR 128 214 -48 186 267 22 0 chr4 89880337 89880382 -112447965 - MIR SINE MIR -115 147 102 504 0 0 0 chr4 89881052 89881108 -112447239 + (TG)n Simple_repeat Simple_repeat 2 57 0 25 0 0 0 chr4 89882795 89882820 -112445527 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr4 89884763 89884788 -112443559 + AT_rich Low_complexity Low_complexity 1 25 0 1818 182 0 0 chr4 89885212 89885508 -112442839 + AluJb SINE Alu 3 298 -14 2892 179 18 7 chr4 89885548 89886100 -112442247 - MER74A LTR ERVL 0 558 1 270 310 164 0 chr4 89887477 89887593 -112440754 + MIR SINE MIR 15 149 -113 2418 41 17 10 chr4 89888867 89889162 -112439185 + AluY SINE Alu 1 297 -14 2053 116 3 0 chr4 89889388 89889680 -112438667 - AluSx SINE Alu -7 305 13 1453 203 130 28 chr4 89889973 89890397 -112437950 - MLT1C LTR MaLR 0 467 1 441 253 173 13 chr4 89890485 89890635 -112437712 + MER5A DNA MER1_type 10 183 -6 480 206 226 45 chr4 89891771 89891970 -112436377 - MIR SINE MIR -26 236 2 2381 68 0 7 chr4 89892023 89892315 -112436032 + AluY SINE Alu 1 290 -21 23 54 0 0 chr4 89892875 89892912 -112435435 + AT_rich Low_complexity Low_complexity 1 37 0 2183 84 0 0 chr4 89893160 89893435 -112434912 - AluSc SINE Alu -13 296 22 2247 95 0 52 chr4 89893546 89893872 -112434475 - AluSg SINE Alu -1 309 1 186 103 0 0 chr4 89893920 89893949 -112434398 + (CAAAA)n Simple_repeat Simple_repeat 4 32 0 525 279 201 9 chr4 89895029 89895248 -112433099 + MIR SINE MIR 2 262 0 23 33 0 0 chr4 89895565 89895595 -112432752 + AT_rich Low_complexity Low_complexity 1 30 0 414 339 40 6 chr4 89895995 89896169 -112432178 + MIR SINE MIR 22 201 -61 398 274 146 32 chr4 89896513 89896732 -112431615 - MIR SINE MIR -14 248 5 188 325 13 52 chr4 89896971 89897048 -112431299 + MIR3 SINE MIR 6 79 -129 202 304 0 0 chr4 89897066 89897112 -112431235 - MIR SINE MIR -170 92 47 45 0 0 0 chr4 89897183 89897228 -112431119 + AT_rich Low_complexity Low_complexity 1 45 0 294 343 9 9 chr4 89897994 89898099 -112430248 + L2 LINE L2 3168 3272 0 205 156 0 0 chr4 89898224 89898256 -112430091 + (CA)n Simple_repeat Simple_repeat 1 32 0 471 283 65 0 chr4 89899028 89899166 -112429181 - MIR SINE MIR -81 181 35 2319 109 3 0 chr4 89899600 89899912 -112428435 - AluSq SINE Alu 0 313 1 21 0 0 0 chr4 89899914 89899935 -112428412 + AT_rich Low_complexity Low_complexity 1 21 0 837 279 77 77 chr4 89900961 89901441 -112426906 - L2 LINE L2 -1 3312 2833 3227 66 7 0 chr4 89901898 89902308 -112426039 - L1PA6 LINE L1 -7 6147 5735 35747 87 4 9 chr4 89902310 89907318 -112421029 - L1PA6 LINE L1 -1150 4996 11 1947 104 9 87 chr4 89907354 89907689 -112420658 + AluSc SINE Alu 1 309 0 1183 138 0 6 chr4 89907693 89907874 -112420473 + AluSg/x SINE Alu 130 309 -1 1085 82 7 0 chr4 89909136 89909271 -112419076 + AluSq/x SINE Alu 3 138 -175 1607 84 101 0 chr4 89909272 89909499 -112418848 + AluSq SINE Alu 54 303 -10 26 50 0 0 chr4 89909605 89909645 -112418702 + AT_rich Low_complexity Low_complexity 1 40 0 1148 219 12 18 chr4 89909652 89910009 -112418338 - L1ME LINE L1 -437 5727 5319 21 36 0 0 chr4 89910142 89910170 -112418177 + AT_rich Low_complexity Low_complexity 1 28 0 2045 151 3 0 chr4 89910181 89910479 -112417868 - AluSx SINE Alu -13 299 1 370 213 117 11 chr4 89910814 89910908 -112417439 - L2 LINE L2 -8 3305 3202 468 128 0 0 chr4 89912875 89912953 -112415394 + (CA)n Simple_repeat Simple_repeat 1 78 0 276 30 0 0 chr4 89914706 89914739 -112413608 + (CA)n Simple_repeat Simple_repeat 1 33 0 2932 116 7 12 chr4 89915865 89916296 -112412051 - MER57B LTR ERV1 -5 429 1 698 319 140 50 chr4 89916302 89917270 -112411077 + L2 LINE L2 2230 3310 -3 3551 145 61 4 chr4 89917461 89918020 -112410327 - LTR9 LTR ERV1 -21 591 1 23 0 0 0 chr4 89918597 89918620 -112409727 + AT_rich Low_complexity Low_complexity 1 23 0 239 234 172 0 chr4 89919039 89919103 -112409244 + L2 LINE L2 2988 3062 -251 292 178 13 57 chr4 89919150 89919307 -112409040 + (TAA)n Simple_repeat Simple_repeat 1 150 0 186 368 0 0 chr4 89919890 89919966 -112408381 - MIR SINE MIR -126 136 61 417 332 42 0 chr4 89920344 89920537 -112407810 + LTR33 LTR ERVL 14 214 -307 194 321 182 38 chr4 89920771 89920930 -112407417 + MIR SINE MIR 54 235 -27 21 71 0 0 chr4 89921206 89921248 -112407099 + AT_rich Low_complexity Low_complexity 1 42 0 328 158 26 0 chr4 89921554 89921630 -112406717 + (TA)n Simple_repeat Simple_repeat 1 78 0 2867 165 31 13 chr4 89921640 89922193 -112406154 - MER4D LTR ERV1 -4 850 199 362 193 73 37 chr4 89922193 89922302 -112406045 + L1MC3 LINE L1 6914 7026 -759 * 1107 114 127 38 chr4 89922289 89922526 -112405821 + L1MC3 LINE L1 7518 7775 -10 967 229 31 31 chr4 89923591 89923849 -112404498 + MIR SINE MIR 5 262 0 1060 221 95 6 chr4 89924895 89925220 -112403127 - MER69 DNA AcHobo -1 2525 2172 749 212 55 5 chr4 89925222 89925499 -112402848 - MER69 DNA AcHobo -2206 320 2 2250 100 3 7 chr4 89926008 89926307 -112402040 - AluSx SINE Alu -14 298 1 1856 164 7 13 chr4 89926307 89926612 -112401735 - AluSx SINE Alu -8 304 2 415 344 88 13 chr4 89926831 89927058 -112401289 + MIR SINE MIR 8 251 -11 197 260 122 65 chr4 89927140 89927263 -112401084 - L2 LINE L2 -6 3266 3137 22 70 0 0 chr4 89927638 89927681 -112400666 + AT_rich Low_complexity Low_complexity 1 43 0 441 107 65 6 chr4 89928460 89928628 -112399719 + (TA)n Simple_repeat Simple_repeat 2 179 0 33 0 0 0 chr4 89928631 89928664 -112399683 + AT_rich Low_complexity Low_complexity 1 33 0 506 96 78 0 chr4 89928668 89928834 -112399513 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 47 0 0 0 chr4 89928834 89928881 -112399466 + AT_rich Low_complexity Low_complexity 1 47 0 419 109 79 0 chr4 89928881 89929046 -112399301 + (TA)n Simple_repeat Simple_repeat 2 179 0 1966 139 0 4 chr4 89929071 89929351 -112398996 - AluSx SINE Alu -33 279 1 1174 269 146 14 chr4 89929475 89930037 -112398310 - Charlie7 DNA MER1_type -1953 659 24 1859 183 0 7 chr4 89930653 89930959 -112397388 + AluJo SINE Alu 3 306 -6 278 184 13 26 chr4 89931452 89931528 -112396819 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 22 0 0 0 chr4 89931902 89931924 -112396423 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr4 89932779 89932814 -112395533 + AT_rich Low_complexity Low_complexity 1 35 0 250 178 22 0 chr4 89932928 89932973 -112395374 - Tigger7 DNA MER2_type 0 2487 2442 246 208 57 0 chr4 89932980 89933086 -112395261 + (TTTAA)n Simple_repeat Simple_repeat 5 116 0 1063 138 254 44 chr4 89933093 89933368 -112394979 - MER1B DNA MER1_type -1 336 4 1830 94 51 0 chr4 89933372 89933648 -112394699 - Tigger7 DNA MER2_type -79 2508 2219 3585 144 64 62 chr4 89933649 89933828 -112394519 - Tigger7 DNA MER2_type -1717 770 593 216 0 0 0 chr4 89933828 89933852 -112394495 + (TG)n Simple_repeat Simple_repeat 1 24 0 2158 39 0 4 chr4 89933852 89934110 -112394237 - AluY SINE Alu -33 278 22 3585 144 64 62 chr4 89934110 89934643 -112393704 - Tigger7 DNA MER2_type -1893 594 55 212 202 258 0 chr4 89935097 89935186 -112393161 - L2 LINE L2 -93 3220 3109 407 335 37 17 chr4 89935454 89935645 -112392702 + MIR SINE MIR 16 207 -55 335 347 66 18 chr4 89935757 89935924 -112392423 + MIR3 SINE MIR 32 206 -2 189 252 87 87 chr4 89936609 89936724 -112391623 - MER5B DNA MER1_type -2 176 62 184 279 23 0 chr4 89937213 89937256 -112391091 + MIR3 SINE MIR 114 157 -51 23 0 0 0 chr4 89940641 89940664 -112387683 + AT_rich Low_complexity Low_complexity 1 23 0 2314 111 3 0 chr4 89941425 89941732 -112386615 + AluSg SINE Alu 2 309 -1 3499 95 2 15 chr4 89941915 89942439 -112385908 - L1PA13 LINE L1 0 6163 5647 228 371 59 64 chr4 89943623 89944148 -112384199 - L2 LINE L2 -6 3266 2706 196 322 149 0 chr4 89944149 89944236 -112384111 + L2 LINE L2 3189 3288 -25 233 389 43 11 chr4 89944287 89944472 -112383875 - L2 LINE L2 -645 2669 2479 21464 27 0 0 chr4 89944523 89947085 -112381262 - L1P LINE L1 -1852 4294 1732 2906 18 0 0 chr4 89947086 89947418 -112380929 + L1HS LINE L1 5824 6155 0 1111 111 4 119 chr4 89947945 89947987 -112380360 + L1PB2 LINE L1 5941 5986 -165 2003 149 0 9 chr4 89947987 89948302 -112380045 + AluSx SINE Alu 1 312 0 1111 111 4 119 chr4 89948302 89948494 -112379853 + L1PB2 LINE L1 5986 6148 -3 207 100 0 0 chr4 89950743 89950773 -112377574 + (TTA)n Simple_repeat Simple_repeat 1 30 0 231 194 0 0 chr4 89951269 89951331 -112377016 - L1MC4 LINE L1 -1341 6701 6640 187 30 30 30 chr4 89951446 89951479 -112376868 + (TTA)n Simple_repeat Simple_repeat 1 33 0 2187 108 14 0 chr4 89952020 89952316 -112376031 - AluSq SINE Alu -13 300 1 684 203 0 15 chr4 89953038 89953171 -112375176 + FLAM_C SINE Alu 1 131 -12 1937 99 95 4 chr4 89953725 89953998 -112374349 - AluSq SINE Alu -15 298 1 210 154 0 0 chr4 89954643 89954682 -112373665 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2861 62 3 0 chr4 89955081 89955450 -112372897 - L1PA8 LINE L1 0 6172 5803 2196 109 0 3 chr4 89955873 89956177 -112372170 - AluSx SINE Alu -9 303 1 388 297 14 36 chr4 89956908 89957046 -112371301 - MER5B DNA MER1_type -23 155 21 1818 168 77 48 chr4 89957369 89957785 -112370562 - MSTA LTR MaLR 0 428 1 202 185 19 19 chr4 89958314 89958368 -112369979 + (TTTAA)n Simple_repeat Simple_repeat 3 56 0 218 260 0 0 chr4 89958741 89958791 -112369556 + CT-rich Low_complexity Low_complexity 3 52 0 634 201 141 5 chr4 89959657 89959841 -112368506 - MER96B DNA MER1_type? -165 252 44 26 64 0 0 chr4 89960579 89960626 -112367721 + AT_rich Low_complexity Low_complexity 1 47 0 201 226 0 0 chr4 89960845 89960898 -112367449 + (TG)n Simple_repeat Simple_repeat 2 54 0 191 365 48 39 chr4 89960962 89961066 -112367281 + L2 LINE L2 3132 3236 -36 5758 176 195 54 chr4 89963109 89964647 -112363700 - MER52A LTR ERV1 0 1755 1 22 70 0 0 chr4 89966000 89966043 -112362304 + AT_rich Low_complexity Low_complexity 1 43 0 780 299 156 35 chr4 89966291 89966887 -112361460 + L2 LINE L2 1612 2279 -1035 455 184 35 11 chr4 89966886 89966973 -112361374 + L2 LINE L2 3225 3313 0 * 192 277 0 0 chr4 89966986 89967033 -112361314 + MIR SINE MIR 160 206 -56 729 239 26 7 chr4 89967589 89967744 -112360603 - MER5A DNA MER1_type -1 188 31 6836 59 32 0 chr4 89968699 89969663 -112358684 - L1PA7 LINE L1 -3 6151 5177 314 163 0 0 chr4 89969663 89969712 -112358635 - L1P LINE L1 -3512 2634 2586 266 143 0 0 chr4 89969713 89969755 -112358592 + L1P LINE L1 2627 2668 -3478 24 0 0 0 chr4 89969777 89969801 -112358546 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 89970118 89970140 -112358207 + AT_rich Low_complexity Low_complexity 1 22 0 6931 29 1 0 chr4 89970188 89970996 -112357351 - L1PA3 LINE L1 -3 6152 5344 323 201 101 36 chr4 89971350 89971489 -112356858 - L1ME4a LINE L1 -11 6110 5963 21 57 0 0 chr4 89971526 89971561 -112356786 + AT_rich Low_complexity Low_complexity 1 35 0 28 79 0 0 chr4 89971690 89971753 -112356594 + AT_rich Low_complexity Low_complexity 1 63 0 269 313 45 86 chr4 89973486 89973619 -112354728 - MIR SINE MIR -10 252 132 6306 81 9 21 chr4 89973619 89974830 -112353517 + L1PA13 LINE L1 4957 6161 -2 269 313 45 86 chr4 89974830 89974939 -112353408 - MIR SINE MIR -130 132 20 1778 128 7 24 chr4 89974976 89975264 -112353083 + MER1B DNA MER1_type 57 339 0 341 315 31 8 chr4 89978142 89978272 -112350075 - MER94 DNA DNA -1 133 1 2300 198 87 25 chr4 89978378 89979059 -112349288 + Tigger7 DNA MER2_type 2 2587 0 24 91 0 0 chr4 89979839 89979905 -112348442 + AT_rich Low_complexity Low_complexity 1 66 0 254 288 51 42 chr4 89980024 89980142 -112348205 - MIR3 SINE MIR -49 159 41 2321 160 13 15 chr4 89980342 89980797 -112347550 + L1MB8 LINE L1 5725 6178 0 484 178 0 23 chr4 89981488 89981617 -112346730 + CT-rich Low_complexity Low_complexity 3 128 0 2091 108 0 14 chr4 89981725 89982036 -112346311 - AluSx SINE Alu 0 307 1 183 397 0 14 chr4 89982257 89982330 -112346017 + MIR3 SINE MIR 83 154 -54 25 0 0 0 chr4 89984342 89984367 -112343980 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr4 89985710 89985730 -112342617 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr4 89986543 89986564 -112341783 + AT_rich Low_complexity Low_complexity 1 21 0 180 111 0 0 chr4 89987781 89987808 -112340539 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2044 121 0 0 chr4 89987816 89988089 -112340258 - AluSx SINE Alu -39 273 1 180 219 0 0 chr4 89988175 89988216 -112340131 + (CA)n Simple_repeat Simple_repeat 2 42 0 382 333 86 11 chr4 89988829 89989015 -112339332 + MIR SINE MIR 6 205 -57 39 60 0 0 chr4 89989827 89989894 -112338453 + AT_rich Low_complexity Low_complexity 1 67 0 209 235 20 0 chr4 89990201 89990252 -112338095 + L2 LINE L2 3261 3312 -1 185 320 13 0 chr4 89990325 89990400 -112337947 - L2 LINE L2 -557 2757 2682 182 374 130 15 chr4 89990614 89991138 -112337209 - L2 LINE L2 -929 2385 1802 665 274 29 10 chr4 89992280 89992488 -112335859 + MIR SINE MIR 29 240 -22 424 303 69 27 chr4 89992634 89992822 -112335525 + MIR SINE MIR 23 218 -44 280 310 110 45 chr4 89993436 89993810 -112334537 - MLT1J LTR MaLR -8 503 106 592 274 29 11 chr4 89994507 89994682 -112333665 + MER97b DNA MER1_type? 2 179 -874 21 36 0 0 chr4 89996167 89996195 -112332152 + AT_rich Low_complexity Low_complexity 1 28 0 249 247 204 30 chr4 89996258 89996489 -112331858 - L1ME LINE L1 -239 5882 5612 1112 191 42 9 chr4 89996521 89996736 -112331611 - MLT1A1 LTR MaLR 0 365 144 6657 48 5 2 chr4 89996738 89997555 -112330792 - L1PA7 LINE L1 -1 6153 5338 1951 83 18 0 chr4 89997638 89997916 -112330431 - L1PA7 LINE L1 -784 5362 5080 2324 104 7 0 chr4 89998113 89998420 -112329927 - AluSp SINE Alu -4 309 1 1435 150 0 5 chr4 89998420 89998640 -112329707 - AluSg/x SINE Alu -16 296 78 6166 146 10 1 chr4 89998848 89999847 -112328500 - L1PA7 LINE L1 -1285 4861 3854 841 142 14 0 chr4 89999843 89999991 -112328356 + L1P LINE L1 5029 5178 -968 * 1872 155 41 41 chr4 90000239 90000580 -112327767 - MER7A DNA MER2_type -7 339 1 449 238 60 18 chr4 90002207 90002375 -112325972 + L1MEd LINE L1 11 185 -5934 425 202 45 0 chr4 90005075 90005164 -112323183 - MLT1G LTR MaLR 0 590 498 738 155 65 26 chr4 90005185 90005340 -112323007 - Tigger3(Golem) DNA MER2_type -2 3027 2867 213 225 56 28 chr4 90005846 90005917 -112322430 - MIR3 SINE MIR -23 185 113 243 289 111 41 chr4 90007096 90007366 -112320981 + L1M4 LINE L1 4371 4659 -1487 259 298 58 13 chr4 90007977 90008202 -112320145 - L1M4 LINE L1 -1481 4665 4431 346 211 189 0 chr4 90008425 90008515 -112319832 + L1MC4 LINE L1 6692 6798 -1244 301 279 109 6 chr4 90008541 90008707 -112319640 + L1MD3 LINE L1 6616 6763 -1232 423 259 114 12 chr4 90008733 90008899 -112319448 + L1MC4 LINE L1 6616 6798 -1244 4158 214 137 16 chr4 90008925 90010074 -112318273 + L1MC4 LINE L1 6616 7903 -139 714 137 40 0 chr4 90011953 90012077 -112316270 - L1MB5 LINE L1 -273 5901 5773 359 283 55 21 chr4 90013007 90013152 -112315195 - MIR SINE MIR -39 223 74 196 278 0 0 chr4 90014801 90014855 -112313492 + MIR SINE MIR 95 148 -60 966 105 4 0 chr4 90015113 90015343 -112313004 + (TA)n Simple_repeat Simple_repeat 1 231 0 218 248 171 29 chr4 90017832 90017937 -112310410 - MIR SINE MIR -59 149 30 378 188 0 0 chr4 90018864 90018928 -112309419 + MER53 DNA DNA 3 66 -123 2399 121 25 108 chr4 90018928 90019439 -112308908 + LTR1 LTR ERV1 1 469 -316 470 329 6 30 chr4 90019652 90019819 -112308528 + L2 LINE L2 3075 3237 -35 189 107 0 0 chr4 90019865 90019893 -112308454 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 184 276 59 69 chr4 90020145 90020348 -112307999 + L2 LINE L2 2684 2884 -430 376 262 81 34 chr4 90020777 90020926 -112307421 + MLT1K LTR MaLR 421 576 -12 528 263 62 12 chr4 90021963 90022123 -112306224 - MIR SINE MIR 0 262 95 383 266 35 21 chr4 90022516 90022659 -112305688 + MIR3 SINE MIR 61 205 -3 191 220 40 0 chr4 90024152 90024202 -112304145 - L2 LINE L2 0 3313 3262 783 232 50 46 chr4 90024228 90024469 -112303878 - MIR SINE MIR 0 262 21 416 212 59 8 chr4 90025246 90025364 -112302983 - MIR3 SINE MIR -19 189 66 2236 97 7 3 chr4 90026006 90026305 -112302042 + AluSg SINE Alu 1 300 -10 2300 114 24 38 chr4 90026412 90026781 -112301566 - THE1B LTR MaLR 0 364 1 5561 134 3 3 chr4 90026854 90027908 -112300439 - L1PA16 LINE L1 0 6166 5105 865 168 60 0 chr4 90027937 90028086 -112300261 - MLT1A1 LTR MaLR -207 158 1 276 302 47 0 chr4 90028251 90028380 -112299967 + L1MC/D LINE L1 5679 5813 -1995 613 282 73 80 chr4 90029829 90030293 -112298054 - MLT1H LTR MaLR -6 543 83 584 265 129 116 chr4 90030358 90030737 -112297610 - L2 LINE L2 0 3313 2941 1492 185 13 36 chr4 90030737 90031040 -112297307 + AluJo SINE Alu 1 296 -16 584 265 129 116 chr4 90031040 90031190 -112297157 - L2 LINE L2 -372 2941 2790 2074 120 16 29 chr4 90031190 90031506 -112296841 - AluSx SINE Alu 0 312 1 584 265 129 116 chr4 90031506 90031614 -112296733 - L2 LINE L2 -523 2790 2685 213 222 37 28 chr4 90032439 90032547 -112295800 + (TTTAA)n Simple_repeat Simple_repeat 3 111 0 364 173 0 13 chr4 90032720 90032795 -112295552 - L1ME4a LINE L1 -218 5903 5830 229 362 71 35 chr4 90034025 90034166 -112294181 - MER5A DNA MER1_type -1 188 43 215 310 35 0 chr4 90034185 90034272 -112294075 + L2 LINE L2 3155 3244 -28 361 295 70 40 chr4 90034856 90035056 -112293291 + L2 LINE L2 3104 3309 -4 306 28 0 0 chr4 90035097 90035133 -112293214 + U6 snRNA snRNA 1 36 -71 241 0 0 0 chr4 90035178 90035205 -112293142 + U6 snRNA snRNA 10 36 -71 2284 77 0 7 chr4 90035252 90035561 -112292786 + AluSp SINE Alu 1 307 0 1145 240 28 8 chr4 90035852 90035904 -112292443 - MLT1C LTR MaLR 0 467 418 216 0 0 0 chr4 90035904 90035928 -112292419 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1145 240 28 8 chr4 90035928 90036129 -112292218 - MLT1C LTR MaLR -49 418 209 189 269 19 19 chr4 90036132 90036184 -112292163 - MER5A DNA MER1_type -136 53 2 933 275 95 25 chr4 90036895 90036932 -112291415 + MER113 DNA MER1_type? 2 35 -486 5626 60 31 35 chr4 90036932 90037715 -112290632 - LTR17 LTR ERV1 0 780 1 933 275 95 25 chr4 90037715 90038161 -112290186 + MER113 DNA MER1_type? 35 519 -2 330 252 54 36 chr4 90038669 90038780 -112289567 + MIR SINE MIR 66 178 -84 2800 209 100 12 chr4 90039179 90039493 -112288854 - L1MB7 LINE L1 0 6184 5899 3808 91 30 6 chr4 90039493 90040034 -112288313 - MER41A LTR ERV1 0 554 1 2800 209 100 12 chr4 90040034 90040472 -112287875 - L1MB7 LINE L1 -285 5899 5366 406 320 0 16 chr4 90040999 90041124 -112287223 + L2 LINE L2 3190 3312 -1 28 61 0 0 chr4 90042219 90042268 -112286079 + AT_rich Low_complexity Low_complexity 1 49 0 186 189 0 0 chr4 90042294 90042331 -112286016 + (CA)n Simple_repeat Simple_repeat 2 38 0 182 204 0 19 chr4 90043520 90043574 -112284773 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 519 79 0 0 chr4 90044432 90044508 -112283839 - L1PA2 LINE L1 -5 6150 6075 184 385 33 0 chr4 90044508 90044599 -112283748 - L2 LINE L2 -653 2661 2568 291 243 0 29 chr4 90044651 90044721 -112283626 + MER5B DNA MER1_type 109 176 -2 2296 105 19 35 chr4 90045593 90045963 -112282384 - THE1B LTR MaLR 0 364 1 464 238 172 20 chr4 90046161 90046312 -112282035 + MER5B DNA MER1_type 1 174 -4 1208 253 32 37 chr4 90046473 90046849 -112281498 - MLT1A2 LTR MaLR 0 374 1 21 0 0 0 chr4 90047292 90047313 -112281034 + AT_rich Low_complexity Low_complexity 1 21 0 265 317 0 12 chr4 90047852 90047934 -112280413 + L2 LINE L2 3231 3311 -2 430 86 14 14 chr4 90048316 90048386 -112279961 - LTR54 LTR ERV1 0 510 441 * 666 284 71 21 chr4 90048375 90048657 -112279690 - MER57A LTR ERV1 -58 345 50 32 26 0 0 chr4 90049985 90050024 -112278323 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr4 90051486 90051507 -112276840 + AT_rich Low_complexity Low_complexity 1 21 0 2066 109 11 35 chr4 90052003 90052350 -112275997 - L1MA3 LINE L1 0 6305 5967 3331 187 74 36 chr4 90053081 90054349 -112273998 - L1MB8 LINE L1 -2 6176 4856 2263 90 0 43 chr4 90054362 90054684 -112273663 - AluY SINE Alu -3 308 1 592 209 108 27 chr4 90054687 90054835 -112273512 + MER58A DNA MER1_type 40 199 -25 21 0 0 0 chr4 90055323 90055344 -112273003 + AT_rich Low_complexity Low_complexity 1 21 0 333 339 17 8 chr4 90055537 90055655 -112272692 + MIR3 SINE MIR 64 182 -26 445 301 145 0 chr4 90055812 90055998 -112272349 + MIR SINE MIR 44 256 -6 721 251 117 17 chr4 90056836 90057067 -112271280 + MIR SINE MIR 6 259 -3 2378 85 0 16 chr4 90057299 90057617 -112270730 - AluSq SINE Alu 0 313 1 189 107 0 0 chr4 90059230 90059258 -112269089 + (CA)n Simple_repeat Simple_repeat 1 28 0 665 228 102 100 chr4 90059545 90059844 -112268503 - L1MC5 LINE L1 -516 7445 7143 1853 130 46 0 chr4 90059844 90060168 -112268179 - L1MB3 LINE L1 -8 6175 5837 665 228 102 100 chr4 90060168 90060337 -112268010 - L1MC5 LINE L1 -818 7143 6976 1030 233 41 78 chr4 90060394 90060938 -112267409 - L1MC4 LINE L1 -1002 6994 6484 3146 216 66 19 chr4 90061243 90062071 -112266276 + Charlie1a DNA MER1_type 2 868 -587 216 0 0 0 chr4 90062903 90062927 -112265420 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5223 96 8 7 chr4 90063292 90064025 -112264322 - L1PA10 LINE L1 0 6168 5435 1084 83 6 12 chr4 90064025 90064194 -112264153 + L1PA10 LINE L1 5275 5442 -726 297 319 60 0 chr4 90064469 90064585 -112263762 - L2 LINE L2 0 3272 3150 2013 158 22 8 chr4 90064779 90065139 -112263208 - MLT1A1 LTR MaLR 0 365 1 2010 135 3 0 chr4 90065361 90065650 -112262697 - AluSx SINE Alu -22 290 1 3488 99 14 4 chr4 90065664 90066178 -112262169 + L1PA13 LINE L1 5645 6163 0 1931 270 82 53 chr4 90066858 90067464 -112260883 + L1ME1 LINE L1 39 693 -5703 2118 130 11 14 chr4 90067464 90067818 -112260529 + L1MC2 LINE L1 5981 6333 -11 1931 270 82 53 chr4 90067818 90068311 -112260036 + L1ME1 LINE L1 693 1170 -5226 2096 268 51 37 chr4 90068321 90069391 -112258956 + L1ME1 LINE L1 1315 2399 -3997 3517 252 86 24 chr4 90069396 90072324 -112256023 + L1ME1 LINE L1 3028 6174 -61 286 164 55 0 chr4 90072330 90072385 -112255962 + L1MC/D LINE L1 5647 5704 -2104 270 357 63 8 chr4 90073465 90073591 -112254756 + MIR SINE MIR 8 140 -122 216 247 156 13 chr4 90073700 90073777 -112254570 - MER5A DNA MER1_type -75 114 27 354 293 187 0 chr4 90073791 90073914 -112254433 + MER5A DNA MER1_type 44 189 0 1162 221 79 28 chr4 90074228 90074518 -112253829 - L1M4 LINE L1 -6230 312 8 487 320 142 0 chr4 90074744 90074969 -112253378 + MIR SINE MIR 6 262 0 376 260 169 45 chr4 90076304 90076481 -112251866 + MIR SINE MIR 64 262 0 308 247 0 0 chr4 90076625 90076698 -112251649 - L2 LINE L2 0 3313 3241 * 396 252 49 8 chr4 90076696 90076819 -112251528 - L2 LINE L2 -470 2844 2717 1003 78 36 0 chr4 90077778 90077945 -112250402 + (TAGA)n Simple_repeat Simple_repeat 2 174 0 255 152 0 0 chr4 90078032 90078078 -112250269 + (TAGG)n Simple_repeat Simple_repeat 1 46 0 1784 169 6 13 chr4 90078174 90078488 -112249859 - AluSx SINE Alu 0 312 1 606 328 19 10 chr4 90078573 90078985 -112249362 - L1MEd LINE L1 -3465 2664 2249 403 304 19 41 chr4 90079000 90079270 -112249077 - L1MEd LINE L1 -4893 1226 963 347 357 35 7 chr4 90079462 90079605 -112248742 - L1MEd LINE L1 -5932 187 41 28 0 0 0 chr4 90081704 90081732 -112246615 + AT_rich Low_complexity Low_complexity 1 28 0 234 313 47 60 chr4 90082900 90083050 -112245297 + L2 LINE L2 2286 2433 -881 368 225 159 29 chr4 90083089 90083227 -112245120 + MIR SINE MIR 40 195 -67 2387 52 0 70 chr4 90083271 90083599 -112244748 + AluY SINE Alu 1 305 -6 222 37 0 0 chr4 90083623 90083650 -112244697 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1561 137 0 17 chr4 90083671 90083912 -112244435 - AluJb SINE Alu -38 274 38 227 191 43 0 chr4 90083954 90084001 -112244346 - Alu SINE Alu -133 169 121 238 339 55 28 chr4 90084276 90084494 -112243853 + L2 LINE L2 2868 3091 -181 225 350 107 5 chr4 90084577 90084774 -112243573 + MIR SINE MIR 13 229 -33 580 321 56 0 chr4 90085596 90085811 -112242536 + MIR SINE MIR 24 250 -12 188 250 57 65 chr4 90086293 90086417 -112241930 - L2 LINE L2 -215 3057 2935 4151 296 161 31 chr4 90087135 90089120 -112239227 + L2 LINE L2 25 2525 -788 2312 99 10 0 chr4 90089120 90089423 -112238924 - AluY SINE Alu -5 306 1 4151 296 161 31 chr4 90089423 90090331 -112238016 + L2 LINE L2 2525 3313 0 33 25 0 0 chr4 90090674 90090714 -112237633 + AT_rich Low_complexity Low_complexity 1 40 0 342 0 0 0 chr4 90094833 90094871 -112233476 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr4 90095529 90095552 -112232795 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 90096333 90096354 -112231993 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 90096465 90096489 -112231858 + AT_rich Low_complexity Low_complexity 1 24 0 261 128 0 0 chr4 90097655 90097702 -112230645 + (TG)n Simple_repeat Simple_repeat 2 48 0 357 186 19 195 chr4 90098099 90098245 -112230102 - MER5B DNA MER1_type -5 173 73 2401 83 0 0 chr4 90098245 90098545 -112229802 - AluSc SINE Alu -8 301 2 357 186 19 195 chr4 90098545 90098608 -112229739 - MER5B DNA MER1_type -105 73 1 2775 181 37 14 chr4 90100449 90101039 -112227308 - L1MB8 LINE L1 0 6178 5575 6547 133 112 90 chr4 90101039 90102698 -112225649 - pTR5 LTR ERV1 0 2438 743 3991 176 34 34 chr4 90102698 90103025 -112225322 - L1MB8 LINE L1 -603 5581 5255 1578 184 29 32 chr4 90103025 90103334 -112225013 - AluJo SINE Alu -4 308 1 3991 176 34 34 chr4 90103334 90104269 -112224078 - L1MB8 LINE L1 -929 5255 4323 243 0 0 0 chr4 90104338 90104365 -112223982 + (TA)n Simple_repeat Simple_repeat 2 28 0 665 277 56 0 chr4 90105593 90105788 -112222559 - MER63A DNA MER1_type -3 207 2 23 33 0 0 chr4 90106502 90106532 -112221815 + AT_rich Low_complexity Low_complexity 1 30 0 835 243 24 5 chr4 90107371 90107577 -112220770 + MER63A DNA MER1_type 1 210 0 296 356 93 31 chr4 90108193 90108418 -112219929 - L2 LINE L2 -10 3262 3024 182 312 54 43 chr4 90109913 90110006 -112218341 + L2 LINE L2 3220 3313 0 38 22 0 0 chr4 90110813 90110858 -112217489 + AT_rich Low_complexity Low_complexity 1 45 0 1796 166 0 7 chr4 90110862 90111146 -112217201 - AluJo SINE Alu -30 282 1 209 406 103 0 chr4 90112284 90112439 -112215908 - L3b LINE CR1 -34 1549 1379 340 348 67 70 chr4 90115046 90115405 -112212942 - L2 LINE L2 0 3272 2915 291 54 0 0 chr4 90115411 90115448 -112212899 + (TGG)n Simple_repeat Simple_repeat 2 38 0 2504 85 0 0 chr4 90115602 90115909 -112212438 + AluSx SINE Alu 1 307 -5 319 361 120 49 chr4 90115992 90116626 -112211721 - L2 LINE L2 -644 2670 1992 209 298 107 12 chr4 90116702 90116786 -112211561 - MER5A DNA MER1_type -18 171 80 476 246 22 22 chr4 90117249 90117383 -112210964 - MER94 DNA DNA 0 134 1 2164 95 0 0 chr4 90117772 90118046 -112210301 + AluY SINE Alu 21 294 -17 462 324 0 14 chr4 90118179 90118318 -112210029 - MIR3 SINE MIR -5 203 67 3150 251 46 44 chr4 90119624 90121694 -112206653 + L1M3e LINE L1 1 2740 -4366 6838 60 19 11 chr4 90121694 90123014 -112205333 + L1PA8 LINE L1 4840 6167 -5 3150 251 46 44 chr4 90123014 90123452 -112204895 + L1M3e LINE L1 2740 3176 -3930 212 299 279 7 chr4 90124338 90124485 -112203862 - MIR SINE MIR -56 206 20 918 178 35 0 chr4 90124787 90124956 -112203391 - MER5B DNA MER1_type -3 175 1 220 200 0 0 chr4 90125308 90125348 -112202999 + MIR SINE MIR 66 105 -103 187 214 0 0 chr4 90125858 90125900 -112202447 - L2 LINE L2 0 3313 3272 188 351 132 25 chr4 90126017 90126421 -112201926 + L2 LINE L2 2608 3054 -218 621 13 0 0 chr4 90126536 90126612 -112201735 + L1P LINE L1 4401 4476 -1670 * 2822 66 0 0 chr4 90126608 90126985 -112201362 - L1P LINE L1 -1784 4362 3986 340 24 0 0 chr4 90126980 90127022 -112201325 - L1P LINE L1 -1883 4263 4222 * 576 284 57 0 chr4 90127314 90127508 -112200839 - L2 LINE L2 0 3313 3109 236 206 32 0 chr4 90127527 90127603 -112200744 + T-rich Low_complexity Low_complexity 1 130 0 1032 285 28 0 chr4 90127737 90128025 -112200322 - L2 LINE L2 -214 3099 2804 262 273 61 0 chr4 90128178 90128244 -112200103 - MER112 DNA MER1_type -183 77 8 629 281 83 53 chr4 90128254 90128556 -112199791 - L2 LINE L2 -506 2808 2498 197 361 45 60 chr4 90128659 90128792 -112199555 - L2 LINE L2 -8 3264 3134 31 68 0 0 chr4 90129861 90129920 -112198427 + AT_rich Low_complexity Low_complexity 1 59 0 304 370 100 29 chr4 90130258 90130763 -112197584 + L2 LINE L2 2555 3100 -172 190 283 141 20 chr4 90133069 90133168 -112195179 + L2 LINE L2 3150 3260 -12 1751 157 33 0 chr4 90133223 90133497 -112194850 - AluSx SINE Alu -27 285 3 21 0 0 0 chr4 90136370 90136391 -112191956 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr4 90137273 90137303 -112191044 + AT_rich Low_complexity Low_complexity 1 30 0 1738 112 86 4 chr4 90137445 90137755 -112190592 - AluSx SINE Alu 0 312 2 275 244 0 130 chr4 90138094 90138217 -112190130 + L2 LINE L2 3207 3313 0 262 253 134 92 chr4 90138836 90139097 -112189250 + LTR33A LTR ERVL 6 277 -246 288 260 52 0 chr4 90141636 90141713 -112186634 - MIR SINE MIR -133 129 49 1704 158 10 29 chr4 90145389 90145725 -112182622 - AluJo SINE Alu 0 312 1 1171 53 0 13 chr4 90146051 90146202 -112182145 - L1PA7 LINE L1 -4 6150 6002 2096 80 43 10 chr4 90146995 90147294 -112181053 + AluY SINE Alu 1 309 -2 23 0 0 0 chr4 90147523 90147546 -112180801 + AT_rich Low_complexity Low_complexity 1 23 0 1862 115 0 34 chr4 90147665 90147960 -112180387 - AluSc SINE Alu -24 285 1 700 152 7 14 chr4 90148054 90148192 -112180155 + L1MA5 LINE L1 6164 6300 0 21 0 0 0 chr4 90148865 90148886 -112179461 + AT_rich Low_complexity Low_complexity 1 21 0 42219 36 21 1 chr4 90150906 90156936 -112171411 - L1PA2 LINE L1 0 6155 2 425 326 7 0 chr4 90158358 90158496 -112169851 + MER117 DNA MER1_type 55 193 -4 193 274 57 66 chr4 90158509 90158615 -112169732 - MER5B DNA MER1_type -2 176 72 228 35 0 0 chr4 90159121 90159150 -112169197 + (CA)n Simple_repeat Simple_repeat 2 30 0 1881 138 3 32 chr4 90159224 90159535 -112168812 + AluSp SINE Alu 1 302 -11 282 296 0 0 chr4 90159901 90159972 -112168375 + MER69 DNA AcHobo 5 75 -2451 225 248 50 59 chr4 90159956 90160057 -112168290 + MER69 DNA AcHobo 2421 2520 -6 * 222 354 0 24 chr4 90160073 90160155 -112168192 - MIR3 SINE MIR -13 195 116 373 348 107 0 chr4 90160181 90160425 -112167922 + L3 LINE CR1 965 1234 -343 407 299 26 8 chr4 90160514 90160631 -112167716 + L2 LINE L2 3195 3313 0 416 325 61 12 chr4 90160665 90161010 -112167337 + L1ME3A LINE L1 1266 1627 -4769 448 300 109 44 chr4 90161328 90161805 -112166542 + L1ME3A LINE L1 4596 5103 -1112 580 286 84 51 chr4 90161896 90162600 -112165747 + L1ME3A LINE L1 5240 5982 -265 317 283 39 88 chr4 90162694 90162899 -112165448 + L1ME3A LINE L1 6037 6231 -8 2452 170 38 20 chr4 90163022 90163522 -112164825 + LTR22 LTR ERVK 1 509 0 6187 178 43 15 chr4 90163653 90164804 -112163543 + L1MA1 LINE L1 15 1197 -6368 * 6574 140 28 4 chr4 90164800 90166694 -112161653 + L1MA1 LINE L1 5586 7555 -18 2529 90 11 0 chr4 90166707 90167072 -112161275 + L1MA2 LINE L1 5936 6304 0 1263 183 14 45 chr4 90168688 90169001 -112159346 - AluJo SINE Alu 0 306 3 247 361 21 10 chr4 90171392 90171489 -112156858 - L3 LINE CR1 -29 1548 1451 * 532 297 36 26 chr4 90171487 90171682 -112156665 + MIR SINE MIR 61 257 -5 28 0 0 0 chr4 90171699 90171727 -112156620 + AT_rich Low_complexity Low_complexity 1 28 0 33 25 0 0 chr4 90171752 90171792 -112156555 + AT_rich Low_complexity Low_complexity 1 40 0 251 299 94 0 chr4 90171807 90171924 -112156423 - L3 LINE CR1 -121 1456 1329 252 0 0 0 chr4 90172053 90172081 -112156266 + (T)n Simple_repeat Simple_repeat 1 28 0 183 80 0 0 chr4 90172102 90172127 -112156220 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2149 119 0 0 chr4 90172193 90172487 -112155860 - AluSc SINE Alu -15 294 1 22 0 0 0 chr4 90172583 90172605 -112155742 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr4 90173929 90173972 -112154375 + AT_rich Low_complexity Low_complexity 1 43 0 38 0 0 0 chr4 90174382 90174420 -112153927 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr4 90176624 90176649 -112151698 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr4 90176824 90176852 -112151495 + AT_rich Low_complexity Low_complexity 1 28 0 1010 176 128 34 chr4 90177477 90177773 -112150574 - MER33 DNA MER1_type 0 324 1 1084 195 42 9 chr4 90178742 90178957 -112149390 - MLT1A1 LTR MaLR 0 365 144 6521 47 5 2 chr4 90178959 90179776 -112148571 - L1PA7 LINE L1 -1 6153 5338 1030 109 18 0 chr4 90179857 90180022 -112148325 - L1PA7 LINE L1 -784 5362 5195 10221 146 13 25 chr4 90230022 90231865 -112096482 + L1P LINE L1 1794 3613 -2533 414 250 198 0 chr4 90232558 90232674 -112095673 - MER5A DNA MER1_type 0 189 51 252 187 121 42 chr4 90233097 90233173 -112095174 + MIR SINE MIR 33 114 -94 271 375 0 25 chr4 90233725 90233845 -112094502 - MIR SINE MIR -126 136 20 277 204 0 19 chr4 90233943 90233997 -112094350 - L2 LINE L2 0 3313 3261 1587 170 3 74 chr4 90234347 90234670 -112093677 - AluJo SINE Alu -12 300 1 364 320 77 0 chr4 90235242 90235398 -112092949 + MIR SINE MIR 77 244 -18 228 149 0 0 chr4 90235403 90235450 -112092897 + (TTA)n Simple_repeat Simple_repeat 2 48 0 8095 110 13 11 chr4 90235773 90237041 -112091306 + L1PA10 LINE L1 3064 4333 -1813 26214 42 1 7 chr4 90237041 90240316 -112088031 + L1PA3 LINE L1 3 3260 -2886 7593 26 5 0 chr4 90240326 90241704 -112086643 + L1PA3 LINE L1 4771 6152 -3 189 0 0 0 chr4 90241721 90241742 -112086605 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 6613 127 42 0 chr4 90241761 90243585 -112084762 + L1PA10 LINE L1 4316 6163 -5 306 290 153 0 chr4 90243652 90243783 -112084564 + MLT1J2 LTR MaLR 277 427 -23 253 241 264 0 chr4 90243790 90243877 -112084470 - L2 LINE L2 -5 3308 3199 27 0 0 0 chr4 90244086 90244113 -112084234 + AT_rich Low_complexity Low_complexity 1 27 0 2622 118 34 7 chr4 90244354 90244771 -112083576 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr4 90246857 90246878 -112081469 + AT_rich Low_complexity Low_complexity 1 21 0 7066 137 25 20 chr4 90247513 90247891 -112080456 + L1MA5A LINE L1 3996 4371 -1926 2094 144 7 0 chr4 90247891 90248197 -112080150 + AluY SINE Alu 2 309 -2 7066 137 25 20 chr4 90248197 90250100 -112078247 + L1MA5A LINE L1 4371 6287 -10 185 371 32 0 chr4 90251381 90251443 -112076904 + MIR SINE MIR 27 90 -118 7561 32 0 0 chr4 90252108 90253246 -112075101 - L1PA4 LINE L1 0 6155 5018 228 311 0 14 chr4 90253297 90253371 -112074976 - MIR SINE MIR -152 110 38 1786 286 79 42 chr4 90253438 90253474 -112074873 - L2 LINE L2 0 3313 3280 2210 154 78 2 chr4 90253474 90253870 -112074477 + MSTB LTR MaLR 1 426 0 1786 286 79 42 chr4 90253870 90253931 -112074416 - L2 LINE L2 -33 3280 3223 798 226 33 42 chr4 90253931 90254143 -112074204 + MER63A DNA MER1_type 1 210 0 1786 286 79 42 chr4 90254143 90255033 -112073314 - L2 LINE L2 -90 3223 2163 1002 220 13 31 chr4 90255049 90255276 -112073071 - MIR SINE MIR -12 250 28 236 289 13 13 chr4 90255281 90255357 -112072990 - L2 LINE L2 -1157 2157 2082 293 263 61 20 chr4 90255670 90255769 -112072578 + MER94 DNA DNA 1 103 -31 1080 111 163 0 chr4 90256084 90256274 -112072073 - Tigger7 DNA MER2_type 0 2491 2271 * 1637 187 67 3 chr4 90256248 90256547 -112071800 - Tigger7 DNA MER2_type -415 318 1 12012 98 9 8 chr4 90256752 90259252 -112069095 - L1PA7 LINE L1 -14 6455 3932 12287 130 25 39 chr4 90259355 90262513 -112065834 - L1PA7 LINE L1 -3301 3160 5 26 0 0 0 chr4 90263094 90263120 -112065227 + AT_rich Low_complexity Low_complexity 1 26 0 473 261 50 45 chr4 90263621 90263820 -112064527 + L1ME LINE L1 3 202 -5917 8420 83 10 4 chr4 90263884 90265825 -112062522 - L1PA7 LINE L1 -6 6148 4194 574 336 84 33 chr4 90266154 90266381 -112061966 + L1ME LINE L1 4716 4930 -1199 1998 217 78 14 chr4 90266381 90266869 -112061478 + LTR40a LTR ERVL 1 519 0 574 336 84 33 chr4 90266869 90267126 -112061221 + L1ME LINE L1 4930 5225 -904 640 279 113 57 chr4 90267141 90267671 -112060676 + L1ME LINE L1 5241 5800 -345 233 250 31 21 chr4 90268484 90268495 -112059852 - L1MA10 LINE L1 -7 6327 6317 2007 249 93 47 chr4 90268495 90269024 -112059323 - L1ME2 LINE L1 -9 6224 5721 3147 156 18 7 chr4 90269024 90269577 -112058770 - L1MA4 LINE L1 -6 6294 5736 2007 249 93 47 chr4 90269577 90270111 -112058236 - L1ME2 LINE L1 -512 5721 5099 976 234 53 11 chr4 90270117 90270399 -112057948 - L1ME2 LINE L1 -4305 2091 1798 333 331 38 15 chr4 90270676 90270809 -112057538 + L2 LINE L2 3136 3271 -1 448 266 11 0 chr4 90271749 90271843 -112056504 + MER58B DNA MER1_type 247 341 0 383 305 55 30 chr4 90272846 90273082 -112055265 + L1M4 LINE L1 2311 2552 -3594 540 281 108 44 chr4 90273100 90273709 -112054638 + L1M4 LINE L1 3581 4228 -1918 9691 31 0 0 chr4 90273719 90275650 -112052697 - L1PA3 LINE L1 -3 6152 4222 6919 36 1 0 chr4 90275651 90276485 -112051862 + L1PA3 LINE L1 3379 4213 -1933 827 113 0 32 chr4 90277013 90277137 -112051210 + L1ME LINE L1 37 156 -6228 * 4268 194 8 5 chr4 90277134 90278126 -112050221 + L1ME LINE L1 656 5559 -823 881 124 97 11 chr4 90278136 90278321 -112050026 + L1MA3 LINE L1 6105 6305 0 10519 210 52 25 chr4 90278340 90279937 -112048410 + L1MB4 LINE L1 789 2342 -4040 1622 162 4 15 chr4 90279937 90280208 -112048139 + AluJo SINE Alu 31 298 -14 10519 210 52 25 chr4 90280208 90283229 -112045118 + L1MB4 LINE L1 2342 5531 -851 2214 89 0 10 chr4 90283251 90283544 -112044803 + AluSc SINE Alu 1 290 -19 1866 163 0 71 chr4 90283559 90283940 -112044407 + L1MB4 LINE L1 5676 6029 -390 254 28 0 28 chr4 90283954 90283990 -112044357 + (TA)n Simple_repeat Simple_repeat 2 36 0 357 100 33 0 chr4 90283996 90284056 -112044291 + L1MB4 LINE L1 6018 6079 -340 551 149 37 9 chr4 90284059 90284166 -112044181 + L1MB4 LINE L1 6307 6416 0 332 242 37 56 chr4 90284201 90284362 -112043985 + L1ME LINE L1 5861 6018 -339 22 56 0 0 chr4 90285010 90285046 -112043301 + AT_rich Low_complexity Low_complexity 1 36 0 1725 82 165 0 chr4 90285877 90286132 -112042215 - AluY SINE Alu -14 297 1 201 39 0 0 chr4 90286840 90286866 -112041481 + (GA)n Simple_repeat Simple_repeat 1 26 0 183 42 0 0 chr4 90288006 90288030 -112040317 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1957 141 2 155 chr4 90289096 90289145 -112039202 + MSTB LTR MaLR 1 56 -370 1543 162 50 30 chr4 90289145 90289327 -112039020 - AluJb SINE Alu -8 304 112 243 0 0 0 chr4 90289327 90289354 -112038993 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1543 162 50 30 chr4 90289354 90289468 -112038879 - AluJb SINE Alu -200 112 2 1957 141 2 155 chr4 90289468 90289921 -112038426 + MSTB LTR MaLR 56 426 0 597 283 73 52 chr4 90289958 90290244 -112038103 + LTR16A LTR ERVL 25 316 -134 1747 232 61 65 chr4 90290434 90291323 -112037024 + HERVL74 LTR ERVL 1870 2818 -738 1842 158 25 30 chr4 90291323 90291684 -112036663 + LTR52 LTR ERVL 53 411 -10 353 372 86 53 chr4 90291828 90292188 -112036159 - L2 LINE L2 -5 3267 2896 196 365 42 0 chr4 90292197 90292293 -112036054 - L2 LINE L2 -558 2756 2657 2399 207 53 17 chr4 90292775 90293317 -112035030 + MER68 LTR ERV1 1 562 0 242 282 0 0 chr4 90293559 90293630 -112034717 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 2467 74 0 0 chr4 90294877 90295187 -112033160 + AluY SINE Alu 1 310 -1 2066 213 38 40 chr4 90295532 90296059 -112032288 - MER74A LTR ERVL -12 546 21 254 345 54 113 chr4 90296082 90296470 -112031877 + L2 LINE L2 2907 3271 -1 1733 179 0 17 chr4 90297445 90297741 -112030606 + AluJb SINE Alu 1 291 -21 23 0 0 0 chr4 90298112 90298135 -112030212 + AT_rich Low_complexity Low_complexity 1 23 0 550 181 0 0 chr4 90298918 90299023 -112029324 - MER53 DNA DNA -83 106 2 2367 85 0 28 chr4 90299045 90299363 -112028984 + AluSc SINE Alu 1 309 0 533 208 57 0 chr4 90299452 90299558 -112028789 - MER45A DNA AcHobo -1 177 66 1032 222 28 5 chr4 90299680 90299896 -112028451 - MER58A DNA MER1_type 0 224 4 2451 71 0 0 chr4 90300047 90300344 -112028003 - AluY SINE Alu -14 297 1 209 236 227 27 chr4 90300685 90300795 -112027552 - MIR SINE MIR -44 218 87 26 64 0 0 chr4 90302695 90302742 -112025605 + AT_rich Low_complexity Low_complexity 1 47 0 201 268 0 0 chr4 90302842 90302883 -112025464 - MIR SINE MIR -58 150 110 737 204 6 31 chr4 90303029 90303191 -112025156 + L1ME3A LINE L1 6003 6160 -10 232 316 94 91 chr4 90303267 90303502 -112024845 - L2 LINE L2 -20 3252 3014 2477 171 15 59 chr4 90303502 90304030 -112024317 - MLT1D LTR MaLR 0 505 1 232 316 94 91 chr4 90304030 90304101 -112024246 - L2 LINE L2 -258 3014 2945 190 325 146 41 chr4 90304198 90304466 -112023881 - L2 LINE L2 -561 2753 2458 26216 133 19 21 chr4 90304531 90310915 -112017432 - L1PA8A LINE L1 -6 6440 4 766 251 62 81 chr4 90311011 90311567 -112016780 + L2 LINE L2 2666 3210 -103 225 269 75 43 chr4 90311571 90311664 -112016683 + L2 LINE L2 2677 2772 -542 221 179 0 0 chr4 90311671 90311710 -112016637 + L2 LINE L2 3269 3307 -6 21 36 0 0 chr4 90312096 90312124 -112016223 + AT_rich Low_complexity Low_complexity 1 28 0 1661 180 0 68 chr4 90312982 90313304 -112015043 - AluJb SINE Alu -12 300 1 364 291 55 9 chr4 90313431 90313541 -112014806 + MIR3 SINE MIR 55 169 -39 2216 93 0 0 chr4 90313820 90314133 -112014214 + AluY SINE Alu 1 313 0 619 286 124 0 chr4 90314254 90314471 -112013876 - MIR SINE MIR -5 257 14 426 258 90 12 chr4 90315127 90315294 -112013053 - L2 LINE L2 0 3313 3134 213 128 26 0 chr4 90315308 90315347 -112013000 + (TG)n Simple_repeat Simple_repeat 1 40 0 210 382 63 26 chr4 90315358 90315549 -112012798 - L2 LINE L2 -188 3084 2887 198 300 100 0 chr4 90316108 90316168 -112012179 - L2 LINE L2 -3 3269 3204 186 133 0 0 chr4 90316822 90316852 -112011495 + (CA)n Simple_repeat Simple_repeat 2 31 0 231 274 111 17 chr4 90316855 90316972 -112011375 - MLT1L LTR MaLR -13 602 475 326 328 111 18 chr4 90317010 90317181 -112011166 - MLT1L LTR MaLR -221 394 208 203 282 28 0 chr4 90318027 90318098 -112010249 - L3b LINE CR1 -86 1497 1425 310 57 38 0 chr4 90318816 90318869 -112009478 + (TTTTA)n Simple_repeat Simple_repeat 1 55 0 24325 22 2 0 chr4 90318869 90322508 -112005839 - L1PA2 LINE L1 -24 6131 2489 235 364 93 0 chr4 90323380 90323520 -112004827 + L2 LINE L2 3161 3313 0 2120 36 7 43 chr4 90324283 90324559 -112003788 - AluY SINE Alu -2 309 44 564 263 42 38 chr4 90326314 90326527 -112001820 + L2 LINE L2 2991 3204 -109 737 310 61 12 chr4 90326599 90326925 -112001422 + L2 LINE L2 2010 2351 -963 208 265 0 0 chr4 90326928 90326977 -112001370 + L2 LINE L2 763 811 -2503 565 257 142 16 chr4 90327602 90327785 -112000562 - MIR SINE MIR -35 227 22 195 100 0 0 chr4 90328370 90328400 -111999947 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 358 333 65 0 chr4 90328400 90328508 -111999839 - L2 LINE L2 -13 3259 3145 1515 218 104 13 chr4 90329614 90329979 -111998368 + MSTD LTR MaLR 1 394 -2 183 170 0 0 chr4 90330184 90330231 -111998116 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 997 299 94 16 chr4 90330371 90330806 -111997541 + LTR33 LTR ERVL 1 469 -52 322 288 133 35 chr4 90331169 90331395 -111996952 + MIR SINE MIR 8 255 -7 1876 114 4 0 chr4 90332441 90332703 -111995644 - AluSc SINE Alu -8 301 39 2076 127 21 0 chr4 90332785 90333076 -111995271 + AluSx SINE Alu 1 297 -15 615 219 99 36 chr4 90333824 90334016 -111994331 + MIR SINE MIR 32 235 -27 200 229 0 16 chr4 90334370 90334431 -111993916 + (TATAA)n Simple_repeat Simple_repeat 4 63 0 1209 292 53 14 chr4 90335030 90335595 -111992752 + L2 LINE L2 2727 3304 -9 986 339 83 14 chr4 90335676 90336393 -111991954 + L2 LINE L2 2375 3169 -144 198 103 0 0 chr4 90336393 90336422 -111991925 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 986 339 83 14 chr4 90336422 90336543 -111991804 + L2 LINE L2 3169 3280 -33 27 62 0 0 chr4 90337578 90337626 -111990721 + AT_rich Low_complexity Low_complexity 1 48 0 3505 207 42 16 chr4 90338079 90338934 -111989413 - L1ME2 LINE L1 0 6164 5288 2445 103 0 22 chr4 90338997 90339119 -111989228 - L1PA16 LINE L1 -6 6160 6037 2501 97 11 29 chr4 90339119 90339501 -111988846 - THE1C LTR MaLR 0 375 1 2445 103 0 22 chr4 90339501 90339747 -111988600 - L1PA16 LINE L1 -129 6037 5800 727 271 59 7 chr4 90339758 90340093 -111988254 - L1ME2 LINE L1 -869 5277 4922 445 107 0 60 chr4 90343144 90343228 -111985119 + MADE1 DNA Mariner 1 79 -1 191 340 0 0 chr4 90343312 90343359 -111984988 + L2 LINE L2 3007 3053 -219 471 213 38 69 chr4 90344335 90344495 -111983852 - MIR SINE MIR -103 159 5 227 265 0 0 chr4 90344634 90344683 -111983664 - MER63 DNA MER1_type 0 1688 1640 679 121 0 0 chr4 90344689 90344788 -111983559 - AluSc SINE Alu -17 292 194 24 67 0 0 chr4 90344949 90344994 -111983353 + AT_rich Low_complexity Low_complexity 1 45 0 25 51 0 0 chr4 90346172 90346211 -111982136 + AT_rich Low_complexity Low_complexity 1 39 0 1877 229 81 10 chr4 90346219 90346713 -111981634 + L1MD3 LINE L1 7449 7977 -18 677 248 56 30 chr4 90346889 90347118 -111981229 + MIR SINE MIR 11 240 -22 262 271 78 31 chr4 90347401 90347484 -111980863 + LTR67 LTR ERVL 406 499 -58 5870 103 18 6 chr4 90347484 90348665 -111979682 + L1PA16 LINE L1 4964 6165 -1 262 271 78 31 chr4 90348665 90348710 -111979637 + LTR67 LTR ERVL 499 540 -17 1753 140 29 11 chr4 90348776 90349055 -111979292 + AluSx SINE Alu 3 286 -26 359 0 43 0 chr4 90349058 90349104 -111979243 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 911 252 83 51 chr4 90350108 90350481 -111977866 + MER67C LTR ERV1 1 385 -325 978 187 14 19 chr4 90350481 90350695 -111977652 + MER67C LTR ERV1 497 709 -1 367 235 118 0 chr4 90351500 90351602 -111976745 - MER103 DNA DNA -49 117 4 986 239 21 33 chr4 90351633 90351876 -111976471 - MIR SINE MIR 0 262 23 423 271 62 14 chr4 90352092 90352236 -111976111 + MIR SINE MIR 111 261 -1 2260 93 3 0 chr4 90352775 90353066 -111975281 - AluSg SINE Alu -18 292 1 2792 169 59 2 chr4 90353206 90353697 -111974650 - MLT2B1 LTR ERVL -1 519 1 1192 178 18 76 chr4 90353981 90354256 -111974091 - MIR SINE MIR 0 262 4 355 302 113 6 chr4 90355557 90355716 -111972631 + MIR3 SINE MIR 2 177 -31 1525 34 0 0 chr4 90355728 90355906 -111972441 - L1PA3 LINE L1 -3 6152 5975 809 272 154 30 chr4 90356389 90357018 -111971329 - L2 LINE L2 -2 3311 2623 319 169 61 47 chr4 90357108 90357256 -111971091 + (TTATA)n Simple_repeat Simple_repeat 5 154 0 1370 292 146 11 chr4 90357286 90357895 -111970452 - L2 LINE L2 -711 2603 1913 810 322 21 45 chr4 90357895 90358274 -111970073 + L2 LINE L2 2944 3313 0 184 454 31 8 chr4 90358478 90358608 -111969739 - L2 LINE L2 -38 3234 3102 299 282 175 0 chr4 90358734 90358837 -111969510 - L2 LINE L2 -2 3311 3191 1574 175 17 17 chr4 90360001 90360293 -111968054 + AluJo SINE Alu 15 306 -6 1201 277 60 40 chr4 90361002 90361095 -111967252 + LTR16C LTR ERVL 1 91 -400 2496 147 31 0 chr4 90361095 90361509 -111966838 - MSTA LTR MaLR 0 428 2 1201 277 60 40 chr4 90361509 90361895 -111966452 + LTR16C LTR ERVL 91 490 -1 1123 316 63 18 chr4 90362023 90362628 -111965719 + L1MEc LINE L1 37 668 -5728 1099 254 42 28 chr4 90362788 90363142 -111965205 + L2 LINE L2 2951 3309 -4 318 114 38 0 chr4 90363256 90363335 -111965012 + (TA)n Simple_repeat Simple_repeat 2 83 0 2338 111 0 0 chr4 90363445 90363752 -111964595 + AluSx SINE Alu 1 307 -5 838 189 50 0 chr4 90364502 90364682 -111963665 - MER5A DNA MER1_type 0 189 1 2183 107 0 10 chr4 90364852 90365162 -111963185 - AluSg SINE Alu -3 307 1 371 358 77 40 chr4 90365282 90365609 -111962738 + L2 LINE L2 2636 2974 -340 300 155 345 0 chr4 90366113 90366197 -111962150 + L2 LINE L2 3179 3291 -22 194 167 111 0 chr4 90366167 90366203 -111962144 + MIR SINE MIR 217 256 -6 * 1542 200 67 9 chr4 90366850 90367195 -111961152 + MLT1A1 LTR MaLR 1 365 0 2226 125 0 0 chr4 90367432 90367744 -111960603 - AluSx SINE Alu 0 312 1 784 161 63 107 chr4 90368576 90368781 -111959566 - MER20 DNA MER1_type -20 199 4 480 272 88 8 chr4 90369185 90369310 -111959037 - L2 LINE L2 -1 3312 3178 22 0 0 0 chr4 90370359 90370381 -111957966 + AT_rich Low_complexity Low_complexity 1 22 0 264 332 26 123 chr4 90370902 90371212 -111957135 - L2 LINE L2 -1 3271 2992 453 134 0 0 chr4 90371243 90371325 -111957022 - LTR37B LTR ERV1 -4 464 383 301 224 15 0 chr4 90371371 90371438 -111956909 - LTR37A LTR ERV1 -248 178 111 2624 45 0 0 chr4 90371935 90372243 -111956104 - AluY SINE Alu -3 308 1 263 218 77 0 chr4 90372531 90372609 -111955738 + L1ME LINE L1 5413 5496 -668 2221 113 0 0 chr4 90373088 90373389 -111954958 + AluSq SINE Alu 1 301 -12 1686 221 125 0 chr4 90373572 90374037 -111954310 - Charlie1b DNA MER1_type 0 523 1 298 247 13 13 chr4 90376484 90376561 -111951786 + MIR SINE MIR 185 261 -1 702 297 43 4 chr4 90377139 90377371 -111950976 + MIR SINE MIR 10 250 -12 565 79 101 0 chr4 90377458 90377547 -111950800 + MER4A LTR ERV1 1 98 -566 1664 129 167 78 chr4 90377547 90377918 -111950429 + MER4A LTR ERV1 261 664 0 315 71 0 0 chr4 90378588 90378630 -111949717 + (CA)n Simple_repeat Simple_repeat 2 43 0 669 323 91 12 chr4 90379654 90379973 -111948374 - L3 LINE CR1 -19 1558 1215 294 265 0 0 chr4 90380551 90380668 -111947679 + (TA)n Simple_repeat Simple_repeat 1 117 0 2520 245 87 29 chr4 90380675 90381816 -111946531 + L1ME3 LINE L1 4849 6076 -86 2311 124 9 6 chr4 90381816 90382164 -111946183 + THE1A LTR MaLR 3 351 -4 2520 245 87 29 chr4 90382164 90382236 -111946111 + L1ME3 LINE L1 6076 6142 -20 234 267 192 0 chr4 90382374 90382546 -111945801 - L1ME LINE L1 -192 5929 5725 2967 75 26 22 chr4 90382653 90383107 -111945240 + L1MA2 LINE L1 5849 6304 0 278 250 151 33 chr4 90384389 90384541 -111943806 - Charlie8 DNA MER1_type -2210 207 38 194 314 0 0 chr4 90384582 90384633 -111943714 - MIR SINE MIR -89 119 69 184 346 88 44 chr4 90384850 90384986 -111943361 + L2 LINE L2 2912 3053 -219 1750 201 49 34 chr4 90385320 90385767 -111942580 - MLT1C LTR MaLR -2 465 12 21 0 0 0 chr4 90386321 90386342 -111942005 + AT_rich Low_complexity Low_complexity 1 21 0 429 287 78 18 chr4 90386342 90386509 -111941838 + MIR3 SINE MIR 11 187 -21 208 163 0 41 chr4 90387439 90387488 -111940859 + CT-rich Low_complexity Low_complexity 4 50 0 478 260 69 46 chr4 90387615 90387788 -111940559 + MIR3 SINE MIR 23 199 -9 2951 25 3 0 chr4 90388067 90388430 -111939917 - L1PA3 LINE L1 -850 5296 4933 7422 22 2 1 chr4 90388430 90389300 -111939047 + L1PA3 LINE L1 5284 6155 0 696 194 0 30 chr4 90389416 90389550 -111938797 - FLAM_C SINE Alu -3 130 1 1945 115 3 28 chr4 90390462 90390750 -111937597 + AluSx SINE Alu 17 297 -15 217 338 8 4 chr4 90390959 90391113 -111937234 - MIR SINE MIR -32 230 29 2075 116 3 29 chr4 90391678 90391989 -111936358 + AluSp SINE Alu 1 303 -10 687 270 143 9 chr4 90392801 90393031 -111935316 - MIR SINE MIR 0 262 2 286 313 135 80 chr4 90393416 90393780 -111934567 - L2 LINE L2 0 3272 2889 245 322 121 55 chr4 90393859 90394058 -111934289 - L2 LINE L2 -559 2755 2544 1676 155 4 18 chr4 90394551 90394828 -111933519 - AluJo SINE Alu -39 273 1 1921 117 3 34 chr4 90395216 90395507 -111932840 + AluSx SINE Alu 6 287 -25 1149 187 126 83 chr4 90395555 90395692 -111932655 + MLT1A1 LTR MaLR 3 133 -232 6485 81 5 2 chr4 90395692 90396582 -111931765 + L1PA8 LINE L1 5278 6169 -3 1149 187 126 83 chr4 90396582 90396792 -111931555 + MLT1A1 LTR MaLR 133 365 0 23 0 0 0 chr4 90396937 90396960 -111931387 + AT_rich Low_complexity Low_complexity 1 23 0 2556 107 13 8 chr4 90397963 90398336 -111930011 + THE1C LTR MaLR 1 375 0 26 50 0 0 chr4 90398399 90398439 -111929908 + AT_rich Low_complexity Low_complexity 1 40 0 233 216 78 0 chr4 90398524 90398575 -111929772 + L2 LINE L2 3257 3311 -2 1835 115 49 89 chr4 90449333 90449684 -111878663 + THE1C LTR MaLR 1 336 -39 1936 149 6 25 chr4 90449684 90449999 -111878348 - AluSx SINE Alu -3 309 1 1835 115 49 89 chr4 90449999 90450038 -111878309 + THE1C LTR MaLR 336 375 0 421 302 0 27 chr4 90450246 90450395 -111877952 + LTR16B LTR ERVL 2 146 -318 225 0 0 0 chr4 90450943 90450968 -111877379 + (T)n Simple_repeat Simple_repeat 1 25 0 193 204 155 39 chr4 90451351 90451454 -111876893 - MIR SINE MIR -48 214 100 270 154 29 115 chr4 90451794 90451851 -111876496 + L1MB2 LINE L1 6075 6121 -50 2259 109 0 0 chr4 90451851 90452145 -111876202 + AluSq SINE Alu 1 294 -19 270 154 29 115 chr4 90452145 90452191 -111876156 + L1MB2 LINE L1 6121 6169 -2 431 224 52 155 chr4 90453147 90453566 -111874781 - L1M4 LINE L1 -1744 4402 4027 2458 66 0 7 chr4 90453567 90453868 -111874479 + AluY SINE Alu 1 299 -12 240 35 0 0 chr4 90454049 90454078 -111874269 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 565 319 31 26 chr4 90454105 90454331 -111874016 - MIR SINE MIR -15 247 21 5426 135 30 0 chr4 90454428 90455395 -111872952 - L1PA16 LINE L1 -9 6157 5149 292 259 12 25 chr4 90455461 90455542 -111872805 - L2 LINE L2 -5 3267 3188 378 61 0 0 chr4 90456237 90456286 -111872061 + (TC)n Simple_repeat Simple_repeat 1 49 0 21 36 0 0 chr4 90456693 90456721 -111871626 + AT_rich Low_complexity Low_complexity 1 28 0 792 329 20 31 chr4 90457781 90458134 -111870213 + MLT1K LTR MaLR 136 484 -104 198 0 0 0 chr4 90458603 90458625 -111869722 + (TG)n Simple_repeat Simple_repeat 2 23 0 306 194 54 101 chr4 90458640 90458688 -111869659 + L1MC4 LINE L1 7919 7968 -74 2368 86 0 10 chr4 90458688 90458991 -111869356 + AluY SINE Alu 1 300 -11 306 194 54 101 chr4 90458991 90459071 -111869276 + L1MC4 LINE L1 7968 8041 -1 206 250 78 0 chr4 90459165 90459229 -111869118 - MIR SINE MIR -83 179 111 201 94 0 0 chr4 90459251 90459283 -111869064 + (GGAGA)n Simple_repeat Simple_repeat 3 34 0 523 247 167 81 chr4 90460098 90460540 -111867807 + MLT1H LTR MaLR 67 546 -3 281 314 12 12 chr4 90461818 90461904 -111866443 + MER91A DNA MER1_type 33 118 -78 232 263 18 18 chr4 90461994 90462051 -111866296 + MER91A DNA MER1_type 131 187 -3 293 265 59 0 chr4 90462151 90462219 -111866128 - L2 LINE L2 -32 3240 3169 234 0 0 0 chr4 90462760 90462786 -111865561 + (T)n Simple_repeat Simple_repeat 1 26 0 527 145 116 70 chr4 90463587 90463759 -111864588 - MER33 DNA MER1_type -1 323 144 1582 174 165 0 chr4 90463771 90464116 -111864231 + MSTA LTR MaLR 27 428 0 622 184 37 0 chr4 90464116 90464250 -111864097 - MER33 DNA MER1_type -176 148 10 2406 57 0 7 chr4 90464288 90464587 -111863760 - AluY SINE Alu -14 297 1 1651 215 24 19 chr4 90464666 90465038 -111863309 + MLT1A2 LTR MaLR 1 374 0 472 288 78 0 chr4 90466355 90466508 -111861839 + MIR SINE MIR 90 254 -8 2511 63 3 3 chr4 90466597 90466900 -111861447 + AluY SINE Alu 1 303 -8 209 304 72 0 chr4 90467122 90467191 -111861156 + L2 LINE L2 3184 3257 -15 1055 115 64 62 chr4 90467569 90467762 -111860585 - LTR54 LTR ERV1 0 510 282 1805 151 0 66 chr4 90467762 90468080 -111860267 - AluJb SINE Alu -15 297 1 1055 115 64 62 chr4 90468080 90468152 -111860195 - LTR54 LTR ERV1 -228 282 212 360 64 0 0 chr4 90468175 90468222 -111860125 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 231 284 45 0 chr4 90468898 90468986 -111859361 + MIR SINE MIR 127 218 -44 1816 158 3 30 chr4 90469143 90469447 -111858900 + AluJo SINE Alu 1 296 -16 600 360 101 29 chr4 90470025 90470666 -111857681 - L2 LINE L2 -9 3263 2590 253 235 24 0 chr4 90470667 90470752 -111857595 + GA-rich Low_complexity Low_complexity 2 88 0 432 232 163 14 chr4 90470777 90470985 -111857362 + L1MC/D LINE L1 5199 5435 -749 3966 156 13 14 chr4 90471202 90471876 -111856471 - MER72 LTR ERV1 -26 696 22 1836 155 0 26 chr4 90471876 90472201 -111856146 - AluSx SINE Alu 0 312 1 3966 156 13 14 chr4 90472201 90472223 -111856124 - MER72 LTR ERV1 -700 22 1 347 225 14 0 chr4 90472223 90472294 -111856053 - LTR16A LTR ERVL -5 445 374 390 355 64 0 chr4 90472321 90472563 -111855784 + HERV16 LTR ERVL 1357 1723 -3418 351 184 11 35 chr4 90472604 90472691 -111855656 + HERV16 LTR ERVL 4814 4898 -98 558 232 29 121 chr4 90472851 90473123 -111855224 + LTR16A1 LTR ERVL 91 337 -120 899 122 0 43 chr4 90473186 90473325 -111855022 - FLAM_C SINE Alu 0 133 1 435 238 32 105 chr4 90473432 90473709 -111854638 - MER112 DNA MER1_type 0 260 4 3386 153 81 3 chr4 90473734 90474635 -111853712 + L1MA4 LINE L1 4861 5865 -435 3617 106 2 6 chr4 90475138 90475648 -111852699 + MER9 LTR ERVK 1 508 -3 2006 124 50 3 chr4 90475680 90475979 -111852368 + AluSq SINE Alu 1 313 0 405 253 41 27 chr4 90476793 90476939 -111851408 + Charlie8 DNA MER1_type 89 236 -2181 215 243 81 14 chr4 90477052 90477126 -111851221 + L2 LINE L2 2553 2631 -683 630 256 97 0 chr4 90477166 90477361 -111850986 + LTR33A LTR ERVL 2 215 -308 356 203 57 41 chr4 90477426 90477549 -111850798 - LTR33 LTR ERVL 0 521 397 949 159 87 34 chr4 90477705 90477913 -111850434 - MER20 DNA MER1_type 0 219 1 271 253 27 0 chr4 90477926 90478001 -111850346 - LTR33 LTR ERVL -424 97 21 354 337 72 42 chr4 90478007 90478342 -111850005 + L2 LINE L2 2969 3313 0 666 248 34 44 chr4 90478567 90478773 -111849574 + MIR SINE MIR 13 216 -46 24 32 0 0 chr4 90478814 90478845 -111849502 + AT_rich Low_complexity Low_complexity 1 31 0 262 214 179 0 chr4 90479899 90479983 -111848364 - L2 LINE L2 -2 3270 3172 24 0 0 0 chr4 90480002 90480026 -111848321 + AT_rich Low_complexity Low_complexity 1 24 0 570 296 173 40 chr4 90480039 90480461 -111847886 - L2 LINE L2 -346 2968 2491 41 36 0 0 chr4 90480880 90480935 -111847412 + AT_rich Low_complexity Low_complexity 1 55 0 185 394 0 0 chr4 90482373 90482439 -111845908 + L2 LINE L2 3197 3262 -10 32 0 0 0 chr4 90483117 90483149 -111845198 + AT_rich Low_complexity Low_complexity 1 32 0 2349 107 7 0 chr4 90483371 90483680 -111844667 - AluSx SINE Alu -1 311 1 359 266 25 0 chr4 90484939 90485018 -111843329 - L2 LINE L2 -1 3271 3191 2220 107 7 10 chr4 90485212 90485512 -111842835 - AluSx SINE Alu -13 299 1 315 330 92 0 chr4 90485981 90486090 -111842257 - L3 LINE CR1 -42 1535 1417 859 236 37 7 chr4 90487347 90487618 -111840729 - MER20B DNA MER1_type 0 783 505 513 305 26 28 chr4 90487756 90488082 -111840265 - MER20B DNA MER1_type -278 505 114 2299 130 97 5 chr4 90488285 90488677 -111839670 - MSTA LTR MaLR 0 428 1 281 254 15 0 chr4 90488759 90488826 -111839521 - L2 LINE L2 -2 3311 3244 24 53 0 0 chr4 90488892 90488930 -111839417 + AT_rich Low_complexity Low_complexity 1 38 0 201 133 0 0 chr4 90489456 90489486 -111838861 + (CA)n Simple_repeat Simple_repeat 1 30 0 55 29 0 0 chr4 90489632 90489701 -111838646 + AT_rich Low_complexity Low_complexity 1 69 0 316 261 168 0 chr4 90490741 90490859 -111837488 + L2 LINE L2 1909 2046 -1268 825 240 58 21 chr4 90490859 90491101 -111837246 + MIR SINE MIR 2 252 -10 195 42 0 0 chr4 90491115 90491139 -111837208 + (TTA)n Simple_repeat Simple_repeat 3 26 0 581 311 212 28 chr4 90491218 90491864 -111836483 + L2 LINE L2 2213 2977 -337 204 289 39 0 chr4 90492093 90492145 -111836202 + L2 LINE L2 3134 3187 -85 25 0 0 0 chr4 90492589 90492614 -111835733 + AT_rich Low_complexity Low_complexity 1 25 0 291 301 12 0 chr4 90492715 90492798 -111835549 + CT-rich Low_complexity Low_complexity 1 84 0 1774 127 49 78 chr4 90492824 90493210 -111835137 - THE1C LTR MaLR 0 375 1 27 49 0 0 chr4 90493286 90493327 -111835020 + AT_rich Low_complexity Low_complexity 1 41 0 862 213 45 80 chr4 90493790 90494003 -111834344 + L2 LINE L2 3011 3211 -102 2428 82 3 0 chr4 90494003 90494307 -111834040 - AluY SINE Alu -6 305 1 862 213 45 80 chr4 90494307 90494407 -111833940 + L2 LINE L2 3211 3313 0 2547 168 40 25 chr4 90495303 90495779 -111832568 + LTR42 LTR ERVL 2 484 -11 235 271 83 52 chr4 90496136 90496232 -111832115 - MIR SINE MIR -72 190 92 745 270 10 20 chr4 90496832 90497032 -111831315 + MIR SINE MIR 64 261 -1 430 310 99 6 chr4 90497111 90497282 -111831065 - MIR SINE MIR -70 192 6 586 263 12 35 chr4 90497322 90497476 -111830871 - MIR SINE MIR -26 236 85 1983 139 134 11 chr4 90497476 90497857 -111830490 - MSTA LTR MaLR 0 428 1 586 263 12 35 chr4 90497857 90497873 -111830474 - MIR SINE MIR -177 85 70 699 277 82 0 chr4 90499080 90499275 -111829072 - MIR SINE MIR -48 214 4 183 359 39 26 chr4 90500572 90500650 -111827697 - L2 LINE L2 -41 3231 3153 660 211 108 57 chr4 90500652 90500792 -111827555 - MER105 DNA DNA 0 204 50 1837 204 49 24 chr4 90500792 90501301 -111827046 + Charlie1b DNA MER1_type 2 523 0 660 211 108 57 chr4 90501301 90501354 -111826993 - MER105 DNA DNA -154 50 1 1538 158 68 0 chr4 90501367 90501632 -111826715 - AluJo SINE Alu -26 286 4 187 300 83 0 chr4 90502442 90502502 -111825845 - MIR SINE MIR -95 113 49 1548 173 59 16 chr4 90503116 90503423 -111824924 + MER2 DNA MER2_type 25 344 -1 707 216 131 55 chr4 90503457 90503656 -111824691 + MER8 DNA MER2_type 3 216 -23 1977 152 46 6 chr4 90504426 90504775 -111823572 - MLT1A1 LTR MaLR 0 365 3 579 272 87 6 chr4 90505142 90505315 -111823032 + MIR SINE MIR 76 262 0 554 301 56 119 chr4 90505360 90505931 -111822416 - L3 LINE CR1 -5 1572 1038 201 333 10 0 chr4 90506158 90506260 -111822087 + (TCTCTG)n Simple_repeat Simple_repeat 3 105 0 277 351 0 0 chr4 90506276 90506353 -111821994 - L2 LINE L2 -2 3270 3194 440 301 124 0 chr4 90506563 90506716 -111821631 - MER5A DNA MER1_type 0 189 18 2021 102 11 18 chr4 90506945 90507092 -111821255 - AluSx SINE Alu -30 282 136 2258 95 0 3 chr4 90507092 90507387 -111820960 - AluY SINE Alu -17 294 1 2021 102 11 18 chr4 90507387 90507523 -111820824 - AluSx SINE Alu -176 136 1 208 259 49 0 chr4 90508116 90508197 -111820150 + (TA)n Simple_repeat Simple_repeat 1 85 0 318 26 0 0 chr4 90508264 90508303 -111820044 + (CA)n Simple_repeat Simple_repeat 2 40 0 251 360 20 0 chr4 90508421 90508521 -111819826 + L2 LINE L2 2564 2665 -649 576 309 157 5 chr4 90508538 90508742 -111819605 + MIR SINE MIR 28 262 0 1341 276 47 32 chr4 90508759 90509374 -111818973 + L1ME3A LINE L1 5328 5951 -211 229 238 37 126 chr4 90509460 90509674 -111818673 + L1ME3A LINE L1 5974 6168 -2 291 299 86 111 chr4 90509676 90510253 -111818094 + L2 LINE L2 2715 3272 0 311 194 0 0 chr4 90510312 90510379 -111817968 - MER116 DNA Mariner 0 80 14 189 0 0 0 chr4 90510976 90510997 -111817350 + (TG)n Simple_repeat Simple_repeat 2 22 0 223 321 29 73 chr4 90512396 90512533 -111815814 + L2 LINE L2 3172 3302 -11 207 324 14 0 chr4 90512510 90512643 -111815704 - L2 LINE L2 -4 3268 3137 * 261 0 0 0 chr4 90512917 90512946 -111815401 + (CA)n Simple_repeat Simple_repeat 1 29 0 234 0 0 0 chr4 90516166 90516192 -111812155 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 387 0 0 0 chr4 90516191 90516234 -111812113 + (TG)n Simple_repeat Simple_repeat 2 44 0 326 243 0 39 chr4 90517838 90517941 -111810406 + MLT1K LTR MaLR 471 569 -19 3443 149 40 5 chr4 90518420 90518550 -111809797 + L1MA6 LINE L1 5648 5772 -528 252 59 0 0 chr4 90518550 90518584 -111809763 + (CA)n Simple_repeat Simple_repeat 1 34 0 3443 149 40 5 chr4 90518584 90519084 -111809263 + L1MA6 LINE L1 5772 6300 0 1785 249 26 33 chr4 90519133 90519970 -111808377 + L1ME2 LINE L1 4943 5770 -394 1106 211 140 19 chr4 90519980 90520288 -111808059 - MER2 DNA MER2_type 0 345 1 1108 167 65 0 chr4 90520418 90520664 -111807683 - L1MA7 LINE L1 -2 6289 6028 1720 174 3 14 chr4 90520695 90520989 -111807358 - AluJb SINE Alu -21 291 1 1375 133 0 5 chr4 90520998 90521244 -111807103 - AluJb SINE Alu 0 332 88 1759 158 4 0 chr4 90521438 90521697 -111806650 + AluSx SINE Alu 1 260 -52 2210 104 0 0 chr4 90521913 90522201 -111806146 + AluSx SINE Alu 25 312 0 1338 212 29 40 chr4 90522811 90523160 -111805187 + L1ME2 LINE L1 5820 6164 0 426 215 0 156 chr4 90523598 90523733 -111804614 - MER81 DNA DNA 0 114 1 762 93 9 0 chr4 90524238 90524345 -111804002 - LTR47A LTR ERVL -1 451 344 188 35 35 0 chr4 90524393 90524422 -111803925 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1547 122 35 8 chr4 90524936 90525190 -111803157 - L1MC2 LINE L1 -9 6335 6075 32 26 0 0 chr4 90526001 90526040 -111802307 + AT_rich Low_complexity Low_complexity 1 39 0 478 335 28 11 chr4 90526590 90526766 -111801581 + MIR SINE MIR 81 259 -3 21 0 0 0 chr4 90527115 90527136 -111801211 + AT_rich Low_complexity Low_complexity 1 21 0 187 365 63 16 chr4 90527482 90527608 -111800739 + MIR3 SINE MIR 43 174 -34 241 270 0 0 chr4 90527924 90527987 -111800360 + (TTA)n Simple_repeat Simple_repeat 3 65 0 391 289 0 19 chr4 90528121 90528225 -111800122 - MIR SINE MIR -77 185 84 2072 106 10 26 chr4 90528326 90528637 -111799710 + L1P3 LINE L1 7 312 -6149 * 3894 80 0 110 chr4 90528633 90528979 -111799368 + L1P LINE L1 2500 2732 -3414 2065 135 3 3 chr4 90528979 90529283 -111799064 + AluSc SINE Alu 4 307 -2 3894 80 0 110 chr4 90529283 90529637 -111798710 + L1P LINE L1 2732 3123 -3023 7147 46 7 2 chr4 90529637 90531155 -111797192 + L1PA7 LINE L1 4630 6151 -3 1834 177 20 0 chr4 90532178 90532483 -111795864 + AluJb SINE Alu 1 311 -1 440 237 119 8 chr4 90534251 90534369 -111793978 + L2 LINE L2 3183 3313 0 193 286 0 0 chr4 90534435 90534484 -111793863 + L2 LINE L2 2635 2683 -631 2556 47 3 5 chr4 90534484 90534845 -111793502 - MLT2A1 LTR ERVL 0 444 1 13773 162 18 15 chr4 90534996 90537841 -111790506 + L1PB1 LINE L1 2546 5433 -1434 2169 107 7 13 chr4 90537841 90537977 -111790370 + AluSp SINE Alu 1 136 -177 2369 97 0 7 chr4 90537977 90538275 -111790072 + AluSx SINE Alu 1 296 -16 2169 107 7 13 chr4 90538275 90538446 -111789901 + AluSp SINE Alu 136 306 -7 13773 162 18 15 chr4 90538446 90539885 -111788462 + L1PB1 LINE L1 5433 6866 -1 308 302 33 77 chr4 90540080 90540262 -111788085 + L1MEd LINE L1 5 178 -5941 3285 118 14 10 chr4 90540485 90540994 -111787353 + MER9 LTR ERVK 1 511 0 447 174 10 31 chr4 90540994 90541092 -111787255 + HERVK9 LTR ERVK 1 96 -5820 1298 166 41 14 chr4 90541103 90541393 -111786954 - MER4D LTR ERV1 -27 876 579 478 121 0 0 chr4 90541394 90541460 -111786887 + AluS SINE Alu 1 66 -246 3420 78 16 19 chr4 90541461 90541948 -111786399 + HERVK9 LTR ERVK 83 568 -5348 * 29264 82 6 6 chr4 90541946 90544502 -111783845 + HERVK9 LTR ERVK 1424 3982 -1934 2242 98 3 0 chr4 90544502 90544797 -111783550 + AluY SINE Alu 2 297 -14 29264 82 6 6 chr4 90544797 90546276 -111782071 + HERVK9 LTR ERVK 3981 5459 -457 655 120 0 0 chr4 90546376 90546476 -111781871 + HERVK9 LTR ERVK 5517 5616 -300 505 104 0 0 chr4 90546483 90546560 -111781787 + MER9 LTR ERVK 435 511 0 362 313 51 6 chr4 90546579 90546755 -111781592 + L1M4 LINE L1 4942 5125 -1021 477 296 109 11 chr4 90546857 90547131 -111781216 + MLT1I LTR MaLR 105 405 -4 679 208 180 0 chr4 90547151 90547329 -111781018 + LTR54B LTR ERV1 1 210 -288 2713 146 53 68 chr4 90547471 90547518 -111780829 + MER92B LTR ERV1 2 48 -588 2244 85 0 0 chr4 90547518 90547822 -111780525 - AluSc SINE Alu 0 304 1 2713 146 53 68 chr4 90547822 90548418 -111779929 + MER92B LTR ERV1 48 636 0 2362 116 0 0 chr4 90548576 90548887 -111779460 + AluSx SINE Alu 1 311 -1 415 254 95 0 chr4 90548951 90549077 -111779270 + L3 LINE CR1 1141 1278 -299 450 194 157 9 chr4 90549148 90549280 -111779067 + FRAM SINE Alu 26 173 0 377 327 203 0 chr4 90549280 90549497 -111778850 + L3 LINE CR1 1317 1577 0 21 36 0 0 chr4 90550252 90550280 -111778067 + AT_rich Low_complexity Low_complexity 1 28 0 2272 113 0 23 chr4 90550993 90551303 -111777044 + AluSg SINE Alu 1 303 -7 1295 133 14 41 chr4 90552449 90552667 -111775680 + AluJb SINE Alu 83 294 -18 2145 103 111 6 chr4 90552737 90553078 -111775269 + MER51B LTR ERV1 1 377 0 824 191 0 0 chr4 90553872 90554008 -111774339 + AluJo SINE Alu 1 136 -176 3159 60 4 22 chr4 90554775 90555225 -111773122 + LTR7 LTR ERV1 1 442 -8 14407 99 12 21 chr4 90555234 90558008 -111770339 + HERVH LTR ERV1 1 2995 -4718 5411 107 7 2 chr4 90557987 90558837 -111769510 + HERVH LTR ERV1 3140 3993 -3720 * 2790 133 0 7 chr4 90558841 90559457 -111768890 + HERVH LTR ERV1 4490 5149 -2564 1298 127 0 0 chr4 90559487 90559692 -111768655 + HERVH LTR ERV1 5615 5819 -1894 1406 85 47 219 chr4 90559692 90560163 -111768184 + HERVH LTR ERV1 7324 7713 0 3345 66 2 22 chr4 90560163 90560620 -111767727 + LTR7 LTR ERV1 1 448 -2 3803 159 35 14 chr4 90560797 90561490 -111766857 - MER39 LTR ERV1 0 707 1 201 244 0 0 chr4 90562596 90562641 -111765706 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 45 45 0 0 chr4 90563642 90563708 -111764639 + AT_rich Low_complexity Low_complexity 1 66 0 231 326 133 10 chr4 90563796 90563894 -111764453 - L2 LINE L2 -40 3232 3123 392 279 137 11 chr4 90564307 90564490 -111763857 - MIR SINE MIR 0 262 57 525 243 200 5 chr4 90564540 90564725 -111763622 + MIR SINE MIR 14 234 -28 382 265 74 56 chr4 90564751 90564913 -111763434 - MIR SINE MIR -36 226 62 347 364 42 13 chr4 90564982 90565218 -111763129 - L2 LINE L2 -639 2675 2433 26 0 0 0 chr4 90565420 90565446 -111762901 + AT_rich Low_complexity Low_complexity 1 26 0 292 294 12 12 chr4 90565646 90565731 -111762616 + L2 LINE L2 3188 3272 0 1507 189 59 24 chr4 90565886 90566261 -111762086 + MLT1B LTR MaLR 1 388 -2 878 204 6 0 chr4 90566374 90566531 -111761816 + FAM SINE Alu 1 158 -17 219 69 0 0 chr4 90566534 90566563 -111761784 + (CATA)n Simple_repeat Simple_repeat 4 32 0 647 282 28 17 chr4 90566591 90566882 -111761465 + L1MC4a LINE L1 6255 6548 -1260 * 1859 269 31 2 chr4 90566881 90567520 -111760827 + L1MC4 LINE L1 7176 7833 -209 22 0 0 0 chr4 90568100 90568122 -111760225 + AT_rich Low_complexity Low_complexity 1 22 0 730 308 39 13 chr4 90568706 90568940 -111759407 + MIR SINE MIR 8 247 -15 3113 96 16 0 chr4 90569140 90569567 -111758780 + MER57B LTR ERV1 1 434 0 2528 65 7 0 chr4 90570815 90571124 -111757223 + AluY SINE Alu 1 311 0 1343 208 58 63 chr4 90571511 90572150 -111756197 - L1MC5 LINE L1 -25 7936 7301 542 208 101 54 chr4 90573891 90574059 -111754288 + MER63A DNA MER1_type 2 177 -33 275 185 19 0 chr4 90574415 90574469 -111753878 - MER94 DNA DNA -79 55 1 552 272 121 85 chr4 90575881 90576318 -111752029 + MLT1J LTR MaLR 1 453 -58 249 214 146 29 chr4 90576880 90576983 -111751364 + MIR SINE MIR 100 214 -48 207 0 0 0 chr4 90577366 90577389 -111750958 + (A)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr4 90577930 90577953 -111750394 + (CA)n Simple_repeat Simple_repeat 1 23 0 557 251 78 26 chr4 90579038 90579309 -111749038 - L1M4 LINE L1 -2206 3940 3656 * 1631 276 47 29 chr4 90579303 90579963 -111748384 + L1ME3A LINE L1 5489 6160 -10 498 290 232 26 chr4 90580061 90580117 -111748230 - LTR16B LTR ERVL 0 464 421 2259 117 0 0 chr4 90580117 90580417 -111747930 + AluSq SINE Alu 1 300 -13 498 290 232 26 chr4 90580417 90580743 -111747604 - LTR16B LTR ERVL -43 421 3 204 40 0 0 chr4 90580785 90580810 -111747537 + (TTTTTA)n Simple_repeat Simple_repeat 1 25 0 2677 211 44 28 chr4 90580830 90581536 -111746811 - L1ME1 LINE L1 -17 6149 5433 1925 140 39 0 chr4 90582066 90582352 -111745995 + AluJb SINE Alu 1 297 -15 228 260 71 58 chr4 90582358 90582512 -111745835 + L1ME LINE L1 5742 5897 -224 23 33 0 0 chr4 90582783 90582813 -111745534 + AT_rich Low_complexity Low_complexity 1 30 0 403 259 43 9 chr4 90584033 90584149 -111744198 - MIR SINE MIR -61 201 82 342 175 79 26 chr4 90584444 90584558 -111743789 - L1ME3 LINE L1 -334 5828 5709 8125 143 116 75 chr4 90584583 90585313 -111743034 + L1MCa LINE L1 29 728 -5698 234 62 0 0 chr4 90585313 90585345 -111743002 + (CA)n Simple_repeat Simple_repeat 1 32 0 8125 143 116 75 chr4 90585345 90586039 -111742308 + L1MCa LINE L1 728 1392 -5034 6741 69 16 2 chr4 90586039 90587288 -111741059 + L1PA10 LINE L1 4902 6165 -3 8125 143 116 75 chr4 90587288 90587986 -111740361 + L1MCa LINE L1 1392 2238 -4188 600 174 43 0 chr4 90588096 90588211 -111740136 - AluJo SINE Alu -178 134 15 24 0 0 0 chr4 90588229 90588253 -111740094 + AT_rich Low_complexity Low_complexity 1 24 0 700 212 122 25 chr4 90588357 90588714 -111739633 - L1ME3 LINE L1 -594 5576 5192 2061 140 35 27 chr4 90588789 90589161 -111739186 + THE1C LTR MaLR 1 375 0 671 285 84 14 chr4 90589609 90589823 -111738524 + MIR SINE MIR 4 232 -30 455 261 93 42 chr4 90589871 90590323 -111738024 - L1ME3 LINE L1 -1291 4855 4381 3098 101 54 69 chr4 90590351 90590886 -111737461 - MER1A DNA MER1_type 0 527 1 319 218 0 89 chr4 90591339 90591440 -111736907 + MLT1E LTR MaLR 72 163 -430 1479 243 95 7 chr4 90591444 90591876 -111736471 + MLT1E LTR MaLR 122 591 -2 381 215 143 80 chr4 90593219 90593456 -111734891 - LTR16C LTR ERVL -15 476 225 871 265 0 0 chr4 90593675 90593856 -111734491 - MIR SINE MIR -76 186 6 242 143 20 0 chr4 90594204 90594253 -111734094 + (CA)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr4 90594283 90594304 -111734043 + AT_rich Low_complexity Low_complexity 1 21 0 3824 194 88 6 chr4 90594452 90595269 -111733078 + L1PBa LINE L1 6 754 -6109 185 62 0 31 chr4 90595269 90595301 -111733046 + (CCCCCA)n Simple_repeat Simple_repeat 5 35 0 3824 194 88 6 chr4 90595301 90596000 -111732347 + L1PBa LINE L1 754 1792 -5071 23 54 0 0 chr4 90596854 90596891 -111731456 + AT_rich Low_complexity Low_complexity 1 37 0 211 339 16 50 chr4 90596915 90597036 -111731311 + MIR SINE MIR 138 254 -8 22 0 0 0 chr4 90597229 90597251 -111731096 + AT_rich Low_complexity Low_complexity 1 22 0 226 257 40 14 chr4 90597737 90597811 -111730536 + MIR SINE MIR 124 199 -63 408 248 97 9 chr4 90598185 90598298 -111730049 + MER5A DNA MER1_type 1 123 -66 1829 151 25 160 chr4 90598604 90599135 -111729212 - LTR32 LTR ERVL 0 471 13 377 329 7 20 chr4 90599135 90599281 -111729066 - MIR SINE MIR -10 252 109 241 348 57 21 chr4 90599284 90599425 -111728922 - L2 LINE L2 -1720 1594 1449 * 282 325 0 70 chr4 90599365 90599522 -111728825 - MIR SINE MIR -116 146 1 213 227 10 124 chr4 90599556 90599653 -111728694 + L2 LINE L2 3221 3306 -7 21 36 0 0 chr4 90599699 90599727 -111728620 + AT_rich Low_complexity Low_complexity 1 28 0 35322 93 8 8 chr4 90599881 90606025 -111722322 - L1PA6 LINE L1 0 6154 13 312 320 25 8 chr4 90606237 90606359 -111721988 + MLT1K LTR MaLR 102 225 -363 1160 169 14 10 chr4 90606927 90607134 -111721213 + AluJo SINE Alu 95 302 -10 410 279 178 36 chr4 90607855 90607993 -111720354 + MIR SINE MIR 2 119 -143 1582 175 90 22 chr4 90607993 90608358 -111719989 + MLT1B LTR MaLR 1 390 0 410 279 178 36 chr4 90608358 90608438 -111719909 + MIR SINE MIR 119 251 -11 357 226 82 82 chr4 90609016 90609175 -111719172 + L1ME4a LINE L1 5952 6110 -11 189 118 118 0 chr4 90610138 90610172 -111718175 + L2 LINE L2 3270 3307 -6 3106 91 54 2 chr4 90610669 90611129 -111717218 + L1PB2 LINE L1 5665 6148 -3 1810 170 7 3 chr4 90612482 90612770 -111715577 + AluJb SINE Alu 1 289 -23 2236 117 0 0 chr4 90612776 90613076 -111715271 + AluSx SINE Alu 1 300 -12 350 261 59 8 chr4 90613379 90613498 -111714849 - MER94 DNA DNA -8 126 2 292 257 95 89 chr4 90613498 90613677 -111714670 - L2 LINE L2 -229 3043 2864 207 258 32 0 chr4 90613651 90613713 -111714634 + MIR SINE MIR 20 83 -179 * 630 261 104 57 chr4 90613710 90614208 -111714139 + L2 LINE L2 2661 3250 -63 210 71 0 0 chr4 90614245 90614273 -111714074 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 303 28 0 0 chr4 90615737 90615773 -111712574 + (TA)n Simple_repeat Simple_repeat 2 37 0 1995 116 46 13 chr4 90616165 90616467 -111711880 - AluSx SINE Alu 0 312 1 601 100 0 0 chr4 90617670 90617750 -111710597 + AluS SINE Alu 4 83 -229 566 140 11 0 chr4 90667754 90667847 -111660500 - L1MC3 LINE L1 -940 6845 6752 1272 126 101 81 chr4 90670270 90670371 -111657976 + MER68 LTR ERV1 3 100 -462 2293 84 3 0 chr4 90670371 90670669 -111657678 - AluY SINE Alu -12 299 1 1272 126 101 81 chr4 90670669 90670814 -111657533 + MER68 LTR ERV1 100 254 -308 1572 234 57 85 chr4 90670919 90671598 -111656749 - L1MEc LINE L1 -4531 1865 1206 3639 239 39 9 chr4 90671635 90672545 -111655802 - L1MEc LINE L1 -5416 980 44 2074 224 224 3 chr4 90672795 90673559 -111654788 + L1ME1 LINE L1 4301 5233 -913 1830 166 3 3 chr4 90673559 90673866 -111654481 - AluSx SINE Alu -5 307 1 2518 209 45 43 chr4 90673866 90674516 -111653831 + L1ME1 LINE L1 5511 6161 -5 55 86 0 0 chr4 90674707 90674846 -111653501 + AT_rich Low_complexity Low_complexity 1 139 0 1950 185 26 10 chr4 90674869 90675253 -111653094 + MLT1B LTR MaLR 1 390 0 10567 144 16 60 chr4 90675353 90677251 -111651096 - L1MA4 LINE L1 0 6300 4320 207 0 0 0 chr4 90677251 90677274 -111651073 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 1869 141 0 4 chr4 90677278 90677555 -111650792 - AluSx SINE Alu -36 276 1 10567 144 16 60 chr4 90677555 90677580 -111650767 - L1MA4 LINE L1 -1983 4317 4292 1507 196 34 3 chr4 90677580 90677871 -111650476 - AluJb SINE Alu -12 300 1 10567 144 16 60 chr4 90677871 90679195 -111649152 - L1MA4 LINE L1 -2008 4292 3202 709 207 0 36 chr4 90679199 90679339 -111649008 + FAM SINE Alu 1 135 -50 33 56 0 0 chr4 90679736 90679790 -111648557 + AT_rich Low_complexity Low_complexity 1 54 0 354 313 125 21 chr4 90679946 90680138 -111648209 + MIR SINE MIR 3 214 -48 22 35 0 0 chr4 90680529 90680558 -111647789 + AT_rich Low_complexity Low_complexity 1 29 0 440 214 32 117 chr4 90683225 90683379 -111644968 - MIR SINE MIR -18 244 104 302 248 129 0 chr4 90683750 90683851 -111644496 + L1ME LINE L1 5693 5806 -315 711 232 33 33 chr4 90684367 90684548 -111643799 - MIR SINE MIR -73 189 9 1428 91 11 0 chr4 90685844 90686053 -111642294 + AluSc SINE Alu 93 303 0 363 280 109 100 chr4 90686275 90686604 -111641743 - MER102b DNA MER1_type 0 341 10 2886 213 61 41 chr4 90687268 90687483 -111640864 - L1M4 LINE L1 -1945 4201 3992 231 36 0 0 chr4 90687483 90687511 -111640836 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1522 164 72 4 chr4 90687514 90687777 -111640570 - AluJb SINE Alu -30 282 2 2886 213 61 41 chr4 90687777 90688264 -111640083 - L1M4 LINE L1 -2155 3991 3471 1850 149 10 29 chr4 90688264 90688572 -111639775 + AluSx SINE Alu 1 302 -10 2886 213 61 41 chr4 90688572 90688748 -111639599 - L1M4 LINE L1 -2675 3471 3300 265 246 237 0 chr4 90688897 90689011 -111639336 + MIR3 SINE MIR 65 205 -3 2429 86 0 6 chr4 90689949 90690263 -111638084 + AluSx SINE Alu 1 312 0 269 294 33 0 chr4 90690827 90690919 -111637428 + L1M4 LINE L1 2664 2758 -3388 849 182 68 17 chr4 90692743 90692866 -111635481 - MER5A DNA MER1_type -1 188 52 20546 28 2 1 chr4 90692866 90696113 -111632234 - L1PA3 LINE L1 -1 6154 2902 849 182 68 17 chr4 90696113 90696165 -111632182 - MER5A DNA MER1_type -137 52 4 2006 133 7 0 chr4 90696728 90697022 -111631325 - AluSx SINE Alu -16 296 1 345 412 0 8 chr4 90697040 90697159 -111631188 + L2 LINE L2 3138 3255 -17 195 129 0 0 chr4 90697297 90697328 -111631019 + (CAG)n Simple_repeat Simple_repeat 1 31 0 217 327 47 0 chr4 90697992 90698090 -111630257 + MIR SINE MIR 53 139 -69 442 103 97 131 chr4 90699513 90699598 -111628749 + L1MB7 LINE L1 6045 6125 -59 1646 184 14 3 chr4 90699598 90699892 -111628455 + AluJo SINE Alu 1 297 -15 442 103 97 131 chr4 90699892 90699951 -111628396 + L1MB7 LINE L1 6125 6184 0 313 253 24 12 chr4 90699993 90700076 -111628271 + GA-rich Low_complexity Low_complexity 3 86 0 205 211 0 0 chr4 90700736 90700774 -111627573 + (TA)n Simple_repeat Simple_repeat 1 38 0 1645 172 17 34 chr4 90702638 90702934 -111625413 + AluJo SINE Alu 1 291 -21 405 219 12 50 chr4 90703035 90703195 -111625152 + L1ME1 LINE L1 5045 5198 -948 2746 15 0 0 chr4 90703197 90703688 -111624659 - L1P1 LINE L1 -605 5550 5060 * 4554 19 0 4 chr4 90703666 90704200 -111624147 + L1HS LINE L1 5622 6153 -2 2746 257 52 59 chr4 90704202 90705190 -111623157 + L1ME1 LINE L1 5192 6161 -5 676 153 29 7 chr4 90705383 90705520 -111622827 - L1MB2 LINE L1 0 6171 6032 1893 153 9 12 chr4 90705521 90705862 -111622485 - L1MB2 LINE L1 -182 5986 5647 597 185 0 0 chr4 90705864 90705956 -111622391 - Tigger2 DNA MER2_type -10 2708 2617 785 179 48 0 chr4 90705964 90706109 -111622238 - L1MB2 LINE L1 -535 5648 5497 410 188 78 171 chr4 90706930 90707091 -111621256 + MLT1E3 LTR MaLR 237 473 -181 218 173 39 0 chr4 90707132 90707184 -111621163 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 860 213 30 0 chr4 90707881 90708050 -111620297 - FAM SINE Alu -1 174 1 206 224 121 0 chr4 90708613 90708671 -111619676 - L2 LINE L2 -1 3312 3248 826 276 100 32 chr4 90708676 90709016 -111619331 - L2 LINE L2 0 3313 2951 3336 158 42 6 chr4 90709020 90709606 -111618741 + Ricksha DNA DNA 1 720 -1078 1103 241 216 3 chr4 90709635 90710005 -111618342 - L2 LINE L2 -731 2583 2135 233 167 167 0 chr4 90710106 90710160 -111618187 - L1MC5 LINE L1 -383 7578 7516 248 279 0 23 chr4 90710833 90710919 -111617428 + GA-rich Low_complexity Low_complexity 1 84 0 1248 160 14 64 chr4 90711009 90711290 -111617057 - MER46C DNA MER2_type -68 270 4 1032 183 43 5 chr4 90712266 90712452 -111615895 + AluJb SINE Alu 4 196 -116 819 188 65 75 chr4 90712569 90712877 -111615470 + MER113 DNA MER1_type? 79 383 -138 189 107 0 0 chr4 90712896 90712924 -111615423 + (A)n Simple_repeat Simple_repeat 1 28 0 654 186 16 40 chr4 90713487 90713611 -111614736 - Tigger5 DNA MER2_type -2085 238 118 11303 33 6 2 chr4 90713611 90715110 -111613237 + L1P2 LINE L1 4021 5521 -634 1160 66 7 0 chr4 90715110 90715242 -111613105 + L1PA4 LINE L1 6000 6151 -4 629 167 0 9 chr4 90715252 90715366 -111612981 - Tigger5 DNA MER2_type -2210 113 1 560 168 0 26 chr4 90715376 90715489 -111612858 + MER3 DNA MER1_type 95 204 -5 856 269 70 71 chr4 90715503 90715798 -111612549 + L2 LINE L2 2611 2905 -408 2316 132 49 62 chr4 90715798 90716230 -111612117 - MSTB LTR MaLR 0 426 1 856 269 70 71 chr4 90716230 90716584 -111611763 + L2 LINE L2 2905 3307 -6 222 299 0 30 chr4 90716622 90716689 -111611658 - L2 LINE L2 -3 3310 3246 567 291 173 25 chr4 90716784 90717107 -111611240 + L3 LINE CR1 1190 1560 -17 245 167 0 0 chr4 90717321 90717363 -111610984 + MER116 DNA Mariner 1 42 -38 13157 85 13 1 chr4 90717749 90719541 -111608806 - L1P LINE L1 -4332 1814 1 3478 250 68 26 chr4 90719540 90720702 -111607645 - L1M1 LINE L1 -5672 1893 16 * 435 270 119 33 chr4 90720742 90721071 -111607276 + L1MEd LINE L1 990 1235 -4884 1133 203 111 3 chr4 90721277 90721627 -111606720 - Charlie5 DNA MER1_type 0 2623 2236 364 187 8 114 chr4 90721635 90721707 -111606640 - MER3 DNA MER1_type -8 154 99 2180 108 0 46 chr4 90721707 90722032 -111606315 + AluSx SINE Alu 3 312 0 364 187 8 114 chr4 90722032 90722082 -111606265 - MER3 DNA MER1_type -63 99 45 24 32 0 0 chr4 90722862 90722893 -111605454 + AT_rich Low_complexity Low_complexity 1 31 0 983 240 75 10 chr4 90723176 90723468 -111604879 - L1ME3 LINE L1 -8 6154 5844 22 0 0 0 chr4 90724161 90724183 -111604164 + AT_rich Low_complexity Low_complexity 1 22 0 2190 133 0 0 chr4 90724493 90724801 -111603546 - AluSc SINE Alu -1 308 1 755 151 8 16 chr4 90725071 90725197 -111603150 + FRAM SINE Alu 31 155 -21 1233 242 66 50 chr4 90725316 90725805 -111602542 - MER39 LTR ERV1 0 707 1 209 250 15 73 chr4 90726235 90726303 -111602044 - MER5B DNA MER1_type -22 156 93 645 243 49 78 chr4 90728101 90728351 -111599996 - MIR SINE MIR 0 262 19 641 151 58 36 chr4 90728434 90728573 -111599774 - LTR9 LTR ERV1 0 612 471 199 0 65 0 chr4 90728573 90728604 -111599743 + (TC)n Simple_repeat Simple_repeat 2 34 0 2468 161 14 77 chr4 90728793 90729302 -111599045 - LTR9 LTR ERV1 -135 477 1 24 0 0 0 chr4 90730581 90730605 -111597742 + AT_rich Low_complexity Low_complexity 1 24 0 2255 102 0 34 chr4 90730761 90731084 -111597263 - AluSx SINE Alu 0 312 1 312 27 0 0 chr4 90731460 90731497 -111596850 + (TA)n Simple_repeat Simple_repeat 1 37 0 414 161 35 0 chr4 90731572 90731659 -111596688 + L1MA5 LINE L1 6211 6300 0 1626 261 40 45 chr4 90732289 90732844 -111595503 + L2 LINE L2 2111 2662 -652 21 0 0 0 chr4 90734505 90734526 -111593821 + AT_rich Low_complexity Low_complexity 1 21 0 185 306 122 0 chr4 90734946 90734995 -111593352 - L2 LINE L2 -13 3259 3205 1996 170 6 9 chr4 90735052 90735388 -111592959 - MER1B DNA MER1_type 0 337 3 222 402 34 29 chr4 90735493 90735702 -111592645 - L2 LINE L2 -236 3036 2827 2144 122 3 0 chr4 90735891 90736186 -111592161 - AluSx SINE Alu -16 296 1 315 386 35 7 chr4 90736455 90736600 -111591747 - L1MC/D LINE L1 -2105 5703 5555 21 0 0 0 chr4 90737074 90737095 -111591252 + AT_rich Low_complexity Low_complexity 1 21 0 209 246 115 16 chr4 90738343 90738404 -111589943 - L2 LINE L2 -1 3271 3205 4134 141 10 23 chr4 90738485 90739165 -111589182 + L1MB2 LINE L1 5439 6111 -60 2384 80 0 0 chr4 90739165 90739466 -111588881 + AluY SINE Alu 1 301 -10 4134 141 10 23 chr4 90739466 90739494 -111588853 + L1MB2 LINE L1 6111 6138 -33 2359 88 0 0 chr4 90739630 90739924 -111588423 - AluSc SINE Alu -15 294 1 747 351 85 26 chr4 90740794 90741511 -111586836 + L2 LINE L2 2217 2975 -339 1036 185 0 5 chr4 90741715 90741899 -111586448 + MER5A DNA MER1_type 2 184 -5 892 281 24 0 chr4 90742258 90742468 -111585879 + MIR SINE MIR 48 262 0 381 291 64 0 chr4 90742443 90742553 -111585794 - L2 LINE L2 -7 3306 3190 * 467 43 29 0 chr4 90742649 90742718 -111585629 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 250 369 0 0 chr4 90743185 90743269 -111585078 - L2 LINE L2 0 3272 3189 246 81 0 0 chr4 90743317 90743354 -111584993 + (ATG)n Simple_repeat Simple_repeat 1 37 0 977 221 5 42 chr4 90743623 90743836 -111584511 + MER20 DNA MER1_type 2 206 -13 285 232 104 9 chr4 90743840 90743946 -111584401 + MIR SINE MIR 29 143 -65 2309 97 6 3 chr4 90743948 90744259 -111584088 + AluSx SINE Alu 1 312 0 1930 213 40 60 chr4 90745404 90745444 -111582903 - MLT2B1 LTR ERVL 0 520 481 264 100 0 0 chr4 90745444 90745484 -111582863 + (TG)n Simple_repeat Simple_repeat 2 41 0 1930 213 40 60 chr4 90745484 90745974 -111582373 - MLT2B1 LTR ERVL -39 481 1 251 282 27 64 chr4 90746324 90746434 -111581913 - L2 LINE L2 -5 3308 3203 1002 265 104 3 chr4 90747188 90747497 -111580850 + L2 LINE L2 1368 1707 -1607 1636 191 7 10 chr4 90747628 90747932 -111580415 + AluJo SINE Alu 1 303 -9 887 272 151 41 chr4 90748044 90748382 -111579965 + L1MC4a LINE L1 5508 5918 -1890 1939 126 25 0 chr4 90748382 90748667 -111579680 + AluSx SINE Alu 2 293 -19 887 272 151 41 chr4 90748667 90748817 -111579530 + L1MC4a LINE L1 5918 6050 -1758 400 333 116 78 chr4 90750222 90750480 -111577867 - L2 LINE L2 -4 3268 3001 840 218 141 12 chr4 90750505 90750753 -111577594 - L1ME LINE L1 -523 5639 5360 180 156 0 0 chr4 90751714 90751746 -111576601 - MIR3 SINE MIR -2 206 175 430 288 25 25 chr4 90752661 90752821 -111575526 + MER103 DNA DNA 4 163 -3 190 235 0 0 chr4 90752865 90752899 -111575448 - MIR SINE MIR -62 146 113 1030 184 0 0 chr4 90753381 90753544 -111574803 + AluJb SINE Alu 136 298 -14 625 316 9 26 chr4 90753841 90754072 -111574275 - MIR SINE MIR -3 259 33 209 234 0 21 chr4 90754246 90754293 -111574054 + MIR SINE MIR 112 157 -105 390 233 213 7 chr4 90754354 90754504 -111573843 + MIR SINE MIR 80 260 -2 2013 112 41 14 chr4 90755099 90755394 -111572953 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr4 90756229 90756250 -111572097 + AT_rich Low_complexity Low_complexity 1 21 0 347 208 119 83 chr4 90756272 90756440 -111571907 + MER112 DNA MER1_type 39 212 -48 2358 81 10 3 chr4 90756599 90756908 -111571439 + AluSq SINE Alu 1 311 -2 192 152 0 0 chr4 90757968 90758001 -111570346 + CT-rich Low_complexity Low_complexity 2 34 0 1535 325 141 32 chr4 90760360 90761407 -111566940 - L2 LINE L2 -672 2642 1444 2107 77 17 30 chr4 90761407 90761704 -111566643 + AluY SINE Alu 1 293 -18 1535 325 141 32 chr4 90761704 90761870 -111566477 - L2 LINE L2 -1870 1444 1297 273 320 90 0 chr4 90764678 90764778 -111563569 + MIR SINE MIR 36 144 -118 23 0 0 0 chr4 90765222 90765245 -111563102 + AT_rich Low_complexity Low_complexity 1 23 0 1643 180 14 21 chr4 90765886 90766170 -111562177 + AluJo SINE Alu 1 282 -30 2074 94 0 37 chr4 90766192 90766489 -111561858 + AluSp SINE Alu 1 286 -27 2232 102 0 3 chr4 90767355 90767650 -111560697 + AluSc SINE Alu 1 294 -15 186 375 173 0 chr4 90767948 90768052 -111560295 - MIR3 SINE MIR -23 185 64 354 362 81 27 chr4 90768400 90768585 -111559762 - MIR3 SINE MIR -9 199 5 191 276 51 71 chr4 90768587 90768685 -111559662 + L3 LINE CR1 1455 1550 -27 26 0 0 0 chr4 90768695 90768721 -111559626 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr4 90770049 90770073 -111558274 + AT_rich Low_complexity Low_complexity 1 24 0 974 170 112 0 chr4 90770337 90770525 -111557822 + MER3 DNA MER1_type 1 209 0 183 250 0 0 chr4 90771216 90771268 -111557079 + CT-rich Low_complexity Low_complexity 1 52 0 303 71 0 0 chr4 90771356 90771398 -111556949 + (CA)n Simple_repeat Simple_repeat 2 43 0 180 111 0 0 chr4 90771443 90771470 -111556877 + (CCTA)n Simple_repeat Simple_repeat 1 27 0 395 287 0 11 chr4 90771665 90771752 -111556595 + L2 LINE L2 3186 3271 -1 1073 174 5 54 chr4 90773220 90773444 -111554903 - AluJb SINE Alu -6 306 94 534 125 0 0 chr4 90773522 90773602 -111554745 - AluJb SINE Alu -220 92 13 241 237 66 26 chr4 90774325 90774401 -111553946 + L1MC5 LINE L1 7839 7917 -44 22 35 0 0 chr4 90775697 90775726 -111552621 + AT_rich Low_complexity Low_complexity 1 29 0 205 364 101 38 chr4 90776607 90777025 -111551322 + L2 LINE L2 1469 1912 -1402 468 270 54 20 chr4 90777038 90777186 -111551161 - L2 LINE L2 0 3313 3161 22 0 0 0 chr4 90777482 90777504 -111550843 + AT_rich Low_complexity Low_complexity 1 22 0 258 176 0 0 chr4 90777506 90777557 -111550790 + (TG)n Simple_repeat Simple_repeat 2 52 0 206 222 37 0 chr4 90777619 90777673 -111550674 + (TA)n Simple_repeat Simple_repeat 1 56 0 986 184 0 0 chr4 90777746 90777909 -111550438 + FRAM SINE Alu 1 162 -14 241 336 116 29 chr4 90777916 90778193 -111550154 - L2 LINE L2 -492 2822 2522 272 282 13 0 chr4 90778197 90778275 -111550072 - MER91A DNA MER1_type -115 81 3 889 226 38 24 chr4 90778461 90778673 -111549674 - MIR SINE MIR -44 218 4 2180 112 0 0 chr4 90779491 90779778 -111548569 - AluSx SINE Alu -13 299 13 2089 119 3 0 chr4 90780757 90781052 -111547295 - AluSq SINE Alu -17 296 1 6142 84 39 0 chr4 90781284 90782233 -111546114 - L1PA14 LINE L1 -3 6158 5190 535 284 88 29 chr4 90783623 90783862 -111544485 - L2 LINE L2 -2 3311 3059 499 240 29 0 chr4 90783869 90783973 -111544374 - MER21B LTR ERV1 -745 118 12 415 104 0 26 chr4 90783973 90784050 -111544297 + (CCCCCT)n Simple_repeat Simple_repeat 6 80 0 1616 142 4 33 chr4 90784073 90784348 -111543999 - AluJb SINE Alu -45 267 1 455 294 124 10 chr4 90785056 90785257 -111543090 - MLT1L LTR MaLR -70 545 322 225 261 31 99 chr4 90785384 90785545 -111542802 - L1ME LINE L1 -266 5855 5706 1701 124 131 3 chr4 90785558 90785840 -111542507 + MER1B DNA MER1_type 22 339 0 489 284 103 34 chr4 90785874 90786078 -111542269 - L1ME LINE L1 -471 5650 5433 212 388 71 16 chr4 90786308 90786491 -111541856 + MIR3 SINE MIR 10 202 -6 36870 90 14 10 chr4 90787119 90793235 -111535112 - L1PA6 LINE L1 0 6154 13 1542 199 14 0 chr4 90793953 90794234 -111534113 - AluJo SINE Alu -21 291 7 31 0 0 0 chr4 90795301 90795332 -111533015 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr4 90795653 90795684 -111532663 + AT_rich Low_complexity Low_complexity 1 31 0 651 377 4 4 chr4 90796170 90796414 -111531933 - MIR SINE MIR -1 261 18 317 312 109 7 chr4 90798188 90798326 -111530021 - MIR SINE MIR -108 154 3 359 259 61 46 chr4 90798996 90799127 -111529220 + MIR SINE MIR 7 139 -123 313 141 84 0 chr4 90799310 90799381 -111528966 - L1ME1 LINE L1 -5 6161 6085 723 223 20 27 chr4 90799390 90799584 -111528763 + FRAM SINE Alu 1 192 0 21 0 0 0 chr4 90799590 90799611 -111528736 + AT_rich Low_complexity Low_complexity 1 21 0 905 206 131 5 chr4 90799648 90799847 -111528500 + MER58A DNA MER1_type 1 224 0 3026 207 58 39 chr4 90799847 90800035 -111528312 - L1ME1 LINE L1 -111 6055 5872 2182 103 7 3 chr4 90800035 90800327 -111528020 - AluSc SINE Alu -16 293 1 3026 207 58 39 chr4 90800327 90800995 -111527352 - L1ME1 LINE L1 -294 5872 5163 1842 167 14 0 chr4 90800995 90801276 -111527071 - AluSx SINE Alu -22 290 6 3026 207 58 39 chr4 90801276 90801574 -111526773 - L1ME1 LINE L1 -1003 5163 4872 2051 114 108 21 chr4 90801580 90801913 -111526434 - THE1B LTR MaLR 0 364 3 11691 83 2 21 chr4 90801913 90803522 -111524825 - THE1B-int LTR MaLR 0 1580 1 2100 137 76 15 chr4 90803522 90803865 -111524482 - THE1B LTR MaLR 0 364 1 230 346 82 19 chr4 90805232 90805391 -111522956 - L3b LINE CR1 -119 1464 1296 580 231 30 0 chr4 90805842 90805976 -111522371 - MER113 DNA MER1_type? -162 359 222 25 0 0 0 chr4 90806573 90806598 -111521749 + AT_rich Low_complexity Low_complexity 1 25 0 1778 174 67 9 chr4 90806828 90807156 -111521191 + MER7A DNA MER2_type 1 345 -1 2290 89 0 3 chr4 90807795 90808088 -111520259 + AluSg SINE Alu 1 292 -18 244 318 0 106 chr4 90808819 90808926 -111519421 + MER5A DNA MER1_type 55 143 -46 1691 117 34 0 chr4 90808926 90809192 -111519155 - AluSq SINE Alu 0 313 39 244 318 0 106 chr4 90809192 90809235 -111519112 + MER5A DNA MER1_type 143 189 0 900 236 66 25 chr4 90809480 90809722 -111518625 + MIR SINE MIR 1 252 -10 459 92 0 0 chr4 90809831 90809896 -111518451 + (CAG)n Simple_repeat Simple_repeat 2 66 0 220 338 14 0 chr4 90809901 90809975 -111518372 + MIR SINE MIR 82 156 -106 359 277 80 9 chr4 90810185 90810297 -111518050 - MIR3 SINE MIR -6 202 83 2421 65 7 0 chr4 90810965 90811255 -111517092 - AluY SINE Alu -19 292 1 254 161 0 18 chr4 90811543 90811599 -111516748 + CT-rich Low_complexity Low_complexity 3 57 0 291 28 0 0 chr4 90811605 90811641 -111516706 + (CAT)n Simple_repeat Simple_repeat 3 38 0 367 106 30 0 chr4 90812194 90812260 -111516087 - L1MB8 LINE L1 -1 6177 6110 1691 175 28 3 chr4 90813627 90813918 -111514429 - AluJo SINE Alu -12 300 3 228 67 0 0 chr4 90814216 90814246 -111514101 + (TG)n Simple_repeat Simple_repeat 1 30 0 1111 228 29 0 chr4 90816682 90816923 -111511424 - MIR SINE MIR -2 260 13 181 292 21 0 chr4 90817311 90817359 -111510988 - MIR SINE MIR -67 141 93 1943 149 0 9 chr4 90817849 90818171 -111510176 + MER47A DNA MER2_type 20 338 -28 224 170 19 19 chr4 90818570 90818623 -111509724 + T-rich Low_complexity Low_complexity 2 54 0 1673 170 28 3 chr4 90819790 90820079 -111508268 + AluJo SINE Alu 3 298 -14 272 305 93 20 chr4 90820223 90820374 -111507973 + MIR SINE MIR 40 201 -61 23 54 0 0 chr4 90820378 90820415 -111507932 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr4 90820526 90820552 -111507795 + AT_rich Low_complexity Low_complexity 1 26 0 271 339 128 0 chr4 90821688 90821797 -111506550 + MIR3 SINE MIR 8 130 -78 601 285 46 22 chr4 90821934 90822175 -111506172 + MIR SINE MIR 17 262 0 272 204 0 0 chr4 90822786 90822835 -111505512 - L2 LINE L2 0 3313 3265 293 156 0 16 chr4 90823407 90823471 -111504876 + (TA)n Simple_repeat Simple_repeat 1 63 0 468 288 114 10 chr4 90823580 90823879 -111504468 - L1ME LINE L1 -302 5819 5490 415 271 111 52 chr4 90823935 90824263 -111504084 - L1ME LINE L1 -750 5396 5083 1949 134 7 26 chr4 90824274 90824581 -111503766 - AluSx SINE Alu -11 301 1 1240 180 9 18 chr4 90825926 90826148 -111502199 + AluJo SINE Alu 1 220 -92 191 228 0 18 chr4 90826167 90826224 -111502123 + GA-rich Low_complexity Low_complexity 4 59 0 577 224 29 58 chr4 90826530 90826704 -111501643 + MIR3 SINE MIR 34 202 -6 25 51 0 0 chr4 90826808 90826847 -111501500 + AT_rich Low_complexity Low_complexity 1 39 0 2322 104 0 0 chr4 90828119 90828428 -111499919 - AluSx SINE Alu -3 309 1 21 0 0 0 chr4 90828512 90828533 -111499814 + AT_rich Low_complexity Low_complexity 1 21 0 1693 140 0 75 chr4 90829222 90829544 -111498803 - AluJb SINE Alu -14 298 1 2168 125 0 7 chr4 90829544 90829846 -111498501 - AluSq SINE Alu -12 301 1 2304 107 3 0 chr4 90831010 90831310 -111497037 - AluSx SINE Alu -11 301 1 807 168 0 8 chr4 90831641 90831766 -111496581 - FLAM_C SINE Alu -19 124 1 22 70 0 0 chr4 90832668 90832711 -111495636 + AT_rich Low_complexity Low_complexity 1 43 0 533 270 124 13 chr4 90832922 90833229 -111495118 + L1ME4a LINE L1 5529 5869 -252 2046 139 3 0 chr4 90834573 90834874 -111493473 + AluSx SINE Alu 1 302 -10 677 280 38 51 chr4 90835403 90835648 -111492699 + MIR SINE MIR 13 256 -6 289 266 143 19 chr4 90835875 90836029 -111492318 - L1ME4a LINE L1 -11 6110 5938 190 258 81 0 chr4 90836546 90836608 -111491739 + MIR SINE MIR 90 156 -106 189 0 0 0 chr4 90837002 90837023 -111491324 + (TA)n Simple_repeat Simple_repeat 2 22 0 881 55 0 0 chr4 90837023 90837132 -111491215 - L1PA5 LINE L1 -8 6146 6038 268 228 13 25 chr4 90838150 90838229 -111490118 - MLT1K LTR MaLR -2 586 509 195 69 0 0 chr4 90838235 90838264 -111490083 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2259 76 0 0 chr4 90838270 90838546 -111489801 - AluSq SINE Alu -37 276 1 1883 153 50 36 chr4 90838851 90839210 -111489137 - MER47A DNA MER2_type 0 366 3 2315 188 42 43 chr4 90839401 90839907 -111488440 - MLT1D LTR MaLR 0 505 1 1006 216 32 0 chr4 90840548 90840738 -111487609 - LTR40b LTR ERVL -6 456 261 27 0 0 0 chr4 90841198 90841225 -111487122 + AT_rich Low_complexity Low_complexity 1 27 0 1754 29 0 10 chr4 90841530 90841734 -111486613 + AluY SINE Alu 97 298 -13 715 249 37 50 chr4 90841744 90841985 -111486362 - LTR40c LTR ERVL -197 268 31 1436 126 0 81 chr4 90842417 90842664 -111485683 + AluJb SINE Alu 1 227 -85 1435 232 40 30 chr4 90842760 90843285 -111485062 + L1ME1 LINE L1 5491 5982 -184 21 57 0 0 chr4 90843360 90843395 -111484952 + AT_rich Low_complexity Low_complexity 1 35 0 2227 94 0 0 chr4 90843998 90844285 -111484062 + AluSc SINE Alu 16 302 -7 21 0 0 0 chr4 90844990 90845011 -111483336 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4 90846039 90846070 -111482277 + AT_rich Low_complexity Low_complexity 1 31 0 323 301 59 7 chr4 90846431 90846584 -111481763 - MER103 DNA DNA -3 163 3 26 30 0 0 chr4 90849009 90849042 -111479305 + AT_rich Low_complexity Low_complexity 1 33 0 2037 119 3 7 chr4 90849121 90849416 -111478931 + AluSx SINE Alu 1 294 -18 2341 88 3 0 chr4 90849611 90849907 -111478440 + AluSp SINE Alu 1 297 -16 329 264 128 58 chr4 90849942 90850200 -111478147 - L1MC4a LINE L1 -108 6013 5736 482 271 0 41 chr4 90851686 90851808 -111476539 + MER45 DNA AcHobo 2 118 -835 282 206 0 55 chr4 90852167 90852240 -111476107 - LTR30 LTR ERV1 -102 620 552 303 263 72 40 chr4 90852664 90852816 -111475531 - L2 LINE L2 -35 3278 3122 20870 120 17 15 chr4 90853176 90856401 -111471946 + L1PA6 LINE L1 11 3244 -2902 9370 70 7 2 chr4 90856402 90858346 -111470001 + L1PA6 LINE L1 4190 6149 -5 1593 172 4 26 chr4 90858652 90858925 -111469422 + AluJo SINE Alu 1 267 -45 1022 104 0 8 chr4 90859376 90859510 -111468837 + AluSq/x SINE Alu 1 133 -180 2291 119 0 0 chr4 90859511 90859814 -111468533 + AluSx SINE Alu 3 305 -7 2512 131 33 0 chr4 90860187 90860576 -111467771 - HSMAR2 DNA Mariner -1 1301 900 292 250 125 9 chr4 90860975 90861087 -111467260 + L1MC/D LINE L1 5713 5837 -1971 1877 86 64 86 chr4 90861617 90861930 -111466417 - AluSx SINE Alu -6 306 1 22 35 0 0 chr4 90862608 90862637 -111465710 + AT_rich Low_complexity Low_complexity 1 29 0 189 107 0 0 chr4 90862707 90862735 -111465612 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 632 133 20 0 chr4 90862842 90862940 -111465407 + AluSp/q SINE Alu 204 303 -10 903 181 7 0 chr4 90863206 90863355 -111464992 - AluJb SINE Alu -19 293 144 2243 116 3 0 chr4 90863365 90863657 -111464690 - AluSx SINE Alu -19 293 1 2274 99 3 3 chr4 90863955 90864249 -111464098 + AluSx SINE Alu 1 294 -18 318 87 0 0 chr4 90865025 90865071 -111463276 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 1634 120 105 0 chr4 90865457 90865715 -111462632 - L1PA16 LINE L1 0 6166 5882 779 159 24 0 chr4 90866978 90867104 -111461243 + FLAM_C SINE Alu 2 130 -13 1777 88 0 9 chr4 90867172 90867398 -111460949 + AluSx SINE Alu 1 224 -88 342 0 0 0 chr4 90867422 90867460 -111460887 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 598 261 108 20 chr4 90868121 90868324 -111460023 + MIR SINE MIR 32 252 -10 407 245 68 14 chr4 90868416 90868563 -111459784 - L1ME4a LINE L1 -1 6120 5966 309 288 103 14 chr4 90869127 90869273 -111459074 - MIR3 SINE MIR -6 202 44 2201 122 3 3 chr4 90870001 90870305 -111458042 + AluSx SINE Alu 1 304 -8 1674 170 17 24 chr4 90870986 90871275 -111457072 + AluJo SINE Alu 1 287 -25 23 0 0 0 chr4 90871276 90871299 -111457048 + AT_rich Low_complexity Low_complexity 1 23 0 853 199 12 12 chr4 90871838 90872009 -111456338 - FRAM SINE Alu -5 171 1 1862 122 63 11 chr4 90873193 90873480 -111454867 + AluSx SINE Alu 1 302 -10 384 278 28 9 chr4 90873896 90874004 -111454343 + MIR SINE MIR 11 120 -142 1732 167 26 13 chr4 90874861 90875172 -111453175 - L1MB7 LINE L1 -16 6168 5854 1492 206 94 5 chr4 90875177 90875551 -111452796 + MSTB1 LTR MaLR 5 411 -21 1973 84 25 18 chr4 90875684 90875969 -111452378 - AluSg SINE Alu -23 287 1 247 271 60 60 chr4 90876011 90876144 -111452203 + MIR SINE MIR 63 195 -67 431 266 89 32 chr4 90876182 90876340 -111452007 - MIR SINE MIR -74 188 22 1002 191 58 9 chr4 90877942 90878167 -111450180 - L1M4 LINE L1 -2258 3888 3653 2522 120 68 27 chr4 90878177 90878586 -111449761 - MSTB LTR MaLR 0 426 1 2322 109 3 0 chr4 90878866 90879177 -111449170 + AluSq SINE Alu 1 312 -1 332 189 14 0 chr4 90879186 90879260 -111449087 + GA-rich Low_complexity Low_complexity 2 76 0 1140 204 119 58 chr4 90879816 90880160 -111448187 + MLT1A1 LTR MaLR 1 365 0 2097 82 50 14 chr4 90880227 90880526 -111447821 - AluSx SINE Alu 0 312 1 821 139 14 0 chr4 90880684 90880828 -111447519 + GA-rich Low_complexity Low_complexity 4 149 0 337 100 17 0 chr4 90880864 90880924 -111447423 + L1MA8 LINE L1 6231 6291 0 1813 70 16 12 chr4 90881534 90881777 -111446570 + AluY SINE Alu 62 305 -6 789 257 188 40 chr4 90881777 90882491 -111445856 - L2 LINE L2 -45 3268 2458 237 271 108 31 chr4 90882494 90882623 -111445724 - L1ME4a LINE L1 -35 6086 5948 1667 125 109 0 chr4 90882873 90883159 -111445188 - AluSx SINE Alu 0 315 2 2304 68 13 16 chr4 90883440 90883749 -111444598 - AluSc SINE Alu -1 308 1 342 261 80 64 chr4 90883842 90884030 -111444317 - L1ME3A LINE L1 -15 6155 5965 498 246 15 170 chr4 90884069 90884365 -111443982 - L2 LINE L2 -60 3253 2913 1381 191 89 118 chr4 90884365 90884523 -111443824 - MLT1C LTR MaLR 0 467 306 2044 133 19 13 chr4 90884523 90884831 -111443516 - AluJo SINE Alu 0 312 3 1381 191 89 118 chr4 90884831 90885153 -111443194 - MLT1C LTR MaLR -161 306 1 498 246 15 170 chr4 90885153 90885261 -111443086 - L2 LINE L2 -400 2913 2790 2242 73 3 14 chr4 90885261 90885580 -111442767 + AluY SINE Alu 1 316 0 498 246 15 170 chr4 90885580 90885688 -111442659 - L2 LINE L2 -523 2790 2756 2128 121 10 3 chr4 90885688 90885985 -111442362 + AluSx SINE Alu 1 299 -13 498 246 15 170 chr4 90885985 90886068 -111442279 - L2 LINE L2 -557 2756 2662 7571 50 2 0 chr4 90886170 90887157 -111441190 - L1P LINE L1 -4298 1848 732 526 309 149 37 chr4 90887192 90887629 -111440718 + L2 LINE L2 2828 3313 0 929 139 6 32 chr4 90887639 90887797 -111440550 + FRAM SINE Alu 1 146 -30 1558 163 47 53 chr4 90887835 90888010 -111440337 - AluJb SINE Alu -6 306 132 8253 23 2 2 chr4 90888010 90889386 -111438961 - L1PA4 LINE L1 0 6155 4780 1558 163 47 53 chr4 90889386 90889510 -111438837 - AluJb SINE Alu -180 132 9 2024 213 73 33 chr4 90889606 90890152 -111438195 - L1ME1 LINE L1 -5 6161 5594 182 146 55 109 chr4 90890182 90890237 -111438110 - MIR SINE MIR -76 132 81 1572 178 27 7 chr4 90890237 90890530 -111437817 - AluJb SINE Alu -13 299 1 1015 73 61 67 chr4 90890707 90890872 -111437475 - L1PA12 LINE L1 0 6168 6005 294 268 87 98 chr4 90890902 90891085 -111437262 - MER5A DNA MER1_type -2 187 7 2163 113 3 19 chr4 90891141 90891470 -111436877 - AluSx SINE Alu 0 312 1 1961 154 6 10 chr4 90891472 90891784 -111436563 - AluSx SINE Alu -1 311 1 211 329 44 22 chr4 90891784 90891921 -111436426 - MER5A DNA MER1_type -49 140 1 2076 123 13 19 chr4 90892209 90892518 -111435829 + AluSx SINE Alu 1 307 -5 215 190 0 63 chr4 90892765 90892844 -111435503 + (CACCC)n Simple_repeat Simple_repeat 5 78 0 1582 207 3 0 chr4 90893339 90893639 -111434708 - AluJo SINE Alu -11 301 1 2116 85 3 51 chr4 90893705 90893999 -111434348 + AluSp SINE Alu 11 290 -23 1032 153 19 0 chr4 90894016 90894173 -111434174 + AluJb SINE Alu 135 294 -18 195 69 0 0 chr4 90894174 90894203 -111434144 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 2156 98 0 60 chr4 90894765 90895083 -111433264 - AluSc SINE Alu -10 299 1 32 26 0 0 chr4 90895416 90895455 -111432892 + AT_rich Low_complexity Low_complexity 1 39 0 1755 116 109 14 chr4 90895432 90895707 -111432640 - AluSx SINE Alu -11 301 1 216 0 0 0 chr4 90895949 90895973 -111432374 + (T)n Simple_repeat Simple_repeat 1 24 0 557 201 14 58 chr4 90896642 90896781 -111431566 + MLT2E LTR ERVL 11 143 -485 228 282 39 29 chr4 90896841 90896944 -111431403 + MLT2E LTR ERVL 175 278 -350 394 225 162 21 chr4 90896958 90897100 -111431247 + MLT2E LTR ERVL 384 545 -83 216 304 76 0 chr4 90897111 90897190 -111431157 + L2 LINE L2 3227 3311 -2 281 186 14 0 chr4 90897197 90897267 -111431080 + GA-rich Low_complexity Low_complexity 1 71 0 348 24 0 0 chr4 90897650 90897691 -111430656 + (TG)n Simple_repeat Simple_repeat 2 42 0 2586 27 37 0 chr4 90897868 90898168 -111430179 - AluYa5 SINE Alu 0 311 1 274 211 0 0 chr4 90898168 90898225 -111430122 + L2 LINE L2 3257 3313 0 24 32 0 0 chr4 90899774 90899805 -111428542 + AT_rich Low_complexity Low_complexity 1 31 0 250 185 185 0 chr4 90900651 90900716 -111427631 + L1M3 LINE L1 5522 5598 -2210 2260 85 41 0 chr4 90901148 90901442 -111426905 + AluSx SINE Alu 1 306 -6 361 285 86 48 chr4 90901624 90901659 -111426688 - L1MC4a LINE L1 -234 5887 5855 1833 148 0 48 chr4 90901659 90901970 -111426377 + AluJo SINE Alu 1 296 -16 361 285 86 48 chr4 90901970 90902377 -111425970 - L1MC4a LINE L1 -266 5855 5495 2049 114 6 35 chr4 90902409 90902724 -111425623 - AluSx SINE Alu -6 306 1 330 360 71 36 chr4 90903017 90903409 -111424938 - L1MC4a LINE L1 -1111 5035 4630 408 290 71 12 chr4 90904453 90904622 -111423725 - MIR SINE MIR 0 262 84 1824 153 6 37 chr4 90904912 90905233 -111423114 + AluJo SINE Alu 1 311 -1 2078 101 3 21 chr4 90905293 90905679 -111422668 - AluSx SINE Alu 0 381 1 189 241 259 36 chr4 90905733 90905845 -111422502 - L2 LINE L2 0 3272 3136 509 236 215 0 chr4 90906042 90906186 -111422161 + L1M3 LINE L1 5631 5805 -375 399 261 139 73 chr4 90906275 90906405 -111421942 - MIR SINE MIR 0 262 142 2478 71 0 10 chr4 90906405 90906715 -111421632 + AluY SINE Alu 1 307 -4 399 261 139 73 chr4 90906715 90906829 -111421518 - MIR SINE MIR -120 142 2 1029 281 36 13 chr4 90906902 90907208 -111421139 + MLT1H LTR MaLR 18 330 -219 1136 181 78 97 chr4 90907208 90907590 -111420757 - THE1C LTR MaLR 0 375 1 250 306 0 0 chr4 90907659 90907731 -111420616 - L1ME LINE L1 -495 5626 5555 184 326 0 0 chr4 90908048 90908091 -111420256 - MIR SINE MIR -193 69 27 187 171 0 0 chr4 90908861 90908896 -111419451 - L2 LINE L2 -16 3297 3263 2126 96 0 20 chr4 90908952 90909244 -111419103 + AluSq SINE Alu 1 286 -27 220 291 0 0 chr4 90909248 90909303 -111419044 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 236 250 45 23 chr4 90909303 90909391 -111418956 - MIR SINE MIR -87 175 86 400 289 82 16 chr4 90909645 90909839 -111418508 + MIR SINE MIR 50 256 -6 2652 94 3 22 chr4 90913059 90913430 -111414917 + THE1B LTR MaLR 1 364 0 2195 55 7 18 chr4 90913559 90913832 -111414515 - AluY SINE Alu -7 304 35 24 67 0 0 chr4 90914403 90914448 -111413899 + AT_rich Low_complexity Low_complexity 1 45 0 1743 156 138 19 chr4 90914471 90914629 -111413718 + Tigger2a DNA MER2_type 19 157 -2551 1692 110 55 79 chr4 90914629 90914920 -111413427 - AluJb SINE Alu -23 289 6 1743 156 138 19 chr4 90914920 90915132 -111413215 + Tigger2a DNA MER2_type 157 433 -1 636 244 122 43 chr4 90915162 90915354 -111412993 + L1ME3A LINE L1 5892 6110 -60 2326 80 36 7 chr4 90915354 90915655 -111412692 + AluSq SINE Alu 1 310 -3 636 244 122 43 chr4 90915655 90915716 -111412631 + L1ME3A LINE L1 6110 6165 -5 1706 95 24 139 chr4 90916340 90916677 -111411670 + AluSg SINE Alu 2 299 -11 564 46 0 287 chr4 90916689 90916863 -111411484 - L1PA8 LINE L1 -1 6171 6048 2368 83 23 0 chr4 90917451 90917753 -111410594 + AluSc SINE Alu 1 309 0 1998 114 32 0 chr4 90918895 90919176 -111409171 + AluSq SINE Alu 1 290 -23 205 164 27 14 chr4 90919810 90919883 -111408464 + A-rich Low_complexity Low_complexity 2 75 0 949 105 9 2 chr4 90919956 90920184 -111408163 + AluSx SINE Alu 7 291 -18 21 0 0 0 chr4 90920184 90920205 -111408142 + AT_rich Low_complexity Low_complexity 1 21 0 231 219 58 117 chr4 90921155 90921292 -111407055 - MIR SINE MIR -22 240 112 287 276 231 25 chr4 90922626 90922682 -111405665 - L2 LINE L2 -11 3302 3259 1214 164 40 121 chr4 90922682 90923005 -111405342 + AluJo SINE Alu 1 297 -15 287 276 231 25 chr4 90923005 90923234 -111405113 - L2 LINE L2 -54 3259 2958 1738 153 44 7 chr4 90923574 90923868 -111404479 + AluJo SINE Alu 1 305 -7 1011 200 0 0 chr4 90923877 90924052 -111404295 + AluJb SINE Alu 137 311 -1 191 303 117 35 chr4 90924131 90924276 -111404071 + MIR SINE MIR 79 235 -27 353 283 161 39 chr4 90924695 90924725 -111403622 + MIR SINE MIR 61 86 -176 1818 90 112 8 chr4 90924725 90924992 -111403355 + AluY SINE Alu 1 295 -16 353 283 161 39 chr4 90924992 90925141 -111403206 + MIR SINE MIR 86 262 0 1435 121 12 96 chr4 90925202 90925392 -111402955 - AluJb SINE Alu -7 305 139 2324 81 7 7 chr4 90925392 90925688 -111402659 - AluSp SINE Alu -17 296 1 1435 121 12 96 chr4 90925688 90925746 -111402601 - AluJb SINE Alu -173 139 78 244 284 39 10 chr4 90926241 90926343 -111402004 + L2 LINE L2 2984 3088 -225 288 283 167 32 chr4 90926390 90926641 -111401706 - MLT1J LTR MaLR 0 511 227 225 318 65 0 chr4 90927281 90927388 -111400959 - MIR SINE MIR 0 262 149 645 199 38 90 chr4 90927439 90927528 -111400819 + LTR40a LTR ERVL 1 93 -426 1483 191 10 44 chr4 90927528 90927677 -111400670 - AluJo SINE Alu -24 288 136 262 0 26 26 chr4 90927677 90927716 -111400631 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 1978 109 25 4 chr4 90927716 90927992 -111400355 - AluSx SINE Alu -30 282 1 1483 191 10 44 chr4 90927992 90928139 -111400208 - AluJo SINE Alu -174 138 1 645 199 38 90 chr4 90928139 90928260 -111400087 + LTR40a LTR ERVL 93 200 -319 2112 121 0 20 chr4 90928265 90928562 -111399785 - AluSx SINE Alu -21 291 1 868 221 137 49 chr4 90928602 90928668 -111399679 + LTR40b LTR ERVL 120 179 -283 2155 112 11 3 chr4 90928668 90928955 -111399392 + AluSx SINE Alu 1 289 -23 868 221 137 49 chr4 90928955 90929195 -111399152 + LTR40b LTR ERVL 179 453 -9 732 174 0 8 chr4 90929207 90929328 -111399019 - FLAM_C SINE Alu -10 123 4 429 214 41 0 chr4 90929352 90929450 -111398897 - MIR SINE MIR -157 105 4 720 227 49 27 chr4 90929452 90929637 -111398710 + MER5A DNA MER1_type 1 189 0 219 261 84 25 chr4 90930080 90930199 -111398148 + MIR SINE MIR 96 221 -41 189 295 9 86 chr4 90930206 90930311 -111398036 + L2 LINE L2 3195 3291 -22 2246 128 0 0 chr4 90930888 90931200 -111397147 - AluSx SINE Alu 0 312 1 1688 174 3 13 chr4 90931462 90931568 -111396779 + AluJo SINE Alu 1 107 -205 198 0 0 0 chr4 90931568 90931590 -111396757 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 1688 174 3 13 chr4 90931590 90931781 -111396566 + AluJo SINE Alu 107 295 -17 22 35 0 0 chr4 90934059 90934088 -111394259 + GC_rich Low_complexity Low_complexity 1 29 0 491 286 119 31 chr4 90935213 90935440 -111392907 - MIR SINE MIR -1 261 15 208 258 155 21 chr4 90936474 90936571 -111391776 - L2 LINE L2 -44 3269 3160 2325 87 3 3 chr4 90937472 90937771 -111390576 - AluSp SINE Alu -12 301 3 2633 62 0 0 chr4 90937779 90938083 -111390264 - AluY SINE Alu -6 305 2 1615 203 3 0 chr4 90938140 90938440 -111389907 + AluJo SINE Alu 1 301 -11 195 318 156 28 chr4 90938630 90938809 -111389538 - L2 LINE L2 -452 2862 2661 241 349 97 31 chr4 90939292 90939487 -111388860 - MIR SINE MIR -46 216 9 197 396 9 0 chr4 90939803 90939914 -111388433 + L2 LINE L2 2248 2359 -955 1418 216 68 86 chr4 90940191 90940739 -111387608 + MLT1E LTR MaLR 1 592 -1 216 231 26 77 chr4 90940895 90940973 -111387374 + GA-rich Low_complexity Low_complexity 2 75 0 180 0 0 0 chr4 90941276 90941296 -111387051 + (CTAGT)n Simple_repeat Simple_repeat 5 24 0 689 230 43 101 chr4 90941297 90941554 -111386793 + LTR33A LTR ERVL 27 268 -255 216 314 95 0 chr4 90941743 90941848 -111386499 - MIR SINE MIR -147 115 1 2268 83 10 23 chr4 90942023 90942325 -111386022 - AluSq SINE Alu -15 298 1 231 36 0 0 chr4 90942470 90942498 -111385849 + (CAAAAA)n Simple_repeat Simple_repeat 5 32 0 509 170 140 10 chr4 90942501 90942601 -111385746 - FLAM_C SINE Alu -29 114 2 1092 182 17 0 chr4 90942734 90942910 -111385437 - MER58A DNA MER1_type -2 222 44 499 135 0 0 chr4 90943028 90943102 -111385245 + LTR32 LTR ERVL 15 88 -383 * 542 96 0 0 chr4 90943083 90943156 -111385191 + LTR32 LTR ERVL 16 88 -383 * 2810 132 36 11 chr4 90943136 90943582 -111384765 + LTR32 LTR ERVL 15 471 0 471 285 65 68 chr4 90943612 90943659 -111384688 + HAL1 LINE L1 1236 1282 -1225 2358 102 0 6 chr4 90943659 90943973 -111384374 + AluSx SINE Alu 1 312 0 471 285 65 68 chr4 90943973 90944307 -111384040 + HAL1 LINE L1 1282 1616 -891 1993 137 18 0 chr4 90944321 90944599 -111383748 + AluSx SINE Alu 1 283 -29 2643 152 14 0 chr4 90944621 90945043 -111383304 + MSTA LTR MaLR 1 428 0 1873 151 0 36 chr4 90945195 90945339 -111383008 + AluJo SINE Alu 1 130 -182 2097 134 0 3 chr4 90945339 90945631 -111382716 + AluSx SINE Alu 3 293 -19 945 180 0 0 chr4 90945640 90945790 -111382557 + AluJb SINE Alu 144 293 -19 962 206 0 11 chr4 90945922 90946097 -111382250 + AluJb SINE Alu 129 301 -11 902 149 0 8 chr4 90946101 90946235 -111382112 + FLAM_A SINE Alu 1 133 0 296 238 43 110 chr4 90946237 90946401 -111381946 - LTR41 LTR ERVL -117 656 504 652 231 38 66 chr4 90946470 90946765 -111381582 - LTR41 LTR ERVL -505 290 1 1264 215 47 6 chr4 90946864 90947208 -111381139 + LTR37A LTR ERV1 49 406 -20 2096 125 9 22 chr4 90947213 90947533 -111380814 + L1MB3 LINE L1 5866 6181 -2 22 0 0 0 chr4 90947533 90947555 -111380792 + AT_rich Low_complexity Low_complexity 1 22 0 718 244 64 40 chr4 90947694 90947944 -111380403 - ERVL LTR ERVL -339 5425 5170 262 182 0 0 chr4 90947961 90948005 -111380342 + MSTD LTR MaLR 1 44 -352 2105 117 7 7 chr4 90948005 90948304 -111380043 - AluSp SINE Alu -14 299 1 1011 89 0 15 chr4 90948306 90948441 -111379906 - AluSq/x SINE Alu -180 133 1 1904 155 13 0 chr4 90948674 90948977 -111379370 + AluSx SINE Alu 1 307 -5 348 176 0 0 chr4 90948983 90949051 -111379296 + GA-rich Low_complexity Low_complexity 2 69 0 279 0 0 0 chr4 90950449 90950480 -111377867 + (TG)n Simple_repeat Simple_repeat 1 31 0 1637 161 7 7 chr4 90951093 90951367 -111376980 + AluJo SINE Alu 1 274 -38 351 0 0 0 chr4 90951367 90951406 -111376941 + (TG)n Simple_repeat Simple_repeat 2 40 0 423 188 26 0 chr4 90951464 90951581 -111376766 + (TA)n Simple_repeat Simple_repeat 1 120 0 21 0 0 0 chr4 90951581 90951602 -111376745 + AT_rich Low_complexity Low_complexity 1 21 0 1662 189 0 7 chr4 90951611 90951907 -111376440 + AluJb SINE Alu 1 294 -18 540 271 139 39 chr4 90952855 90953136 -111375211 + L2 LINE L2 3005 3313 0 2254 122 0 3 chr4 90954176 90954488 -111373859 + AluSx SINE Alu 1 311 -1 837 261 148 36 chr4 90957055 90957525 -111370822 - L2 LINE L2 -62 3251 2729 2140 119 24 0 chr4 90957718 90958011 -111370336 + AluSx SINE Alu 1 300 -12 24 32 0 0 chr4 90958694 90958725 -111369622 + AT_rich Low_complexity Low_complexity 1 31 0 1037 255 173 49 chr4 90960274 90960331 -111368016 - L2 LINE L2 0 3313 3264 2890 0 0 0 chr4 90960331 90960636 -111367711 + AluYa5 SINE Alu 1 305 -6 1037 255 173 49 chr4 90960636 90961351 -111366996 - L2 LINE L2 -49 3264 2458 237 271 108 31 chr4 90961354 90961483 -111366864 - L1ME4a LINE L1 -35 6086 5948 1667 125 109 0 chr4 90961733 90962019 -111366328 - AluSx SINE Alu 0 315 2 2556 65 3 0 chr4 90962300 90962607 -111365740 - AluSc SINE Alu -1 308 1 825 256 100 110 chr4 90963969 90964488 -111363859 - MER51C LTR ERV1 0 640 127 337 242 170 55 chr4 90965270 90965452 -111362895 - MLT1J1 LTR MaLR 0 446 244 3299 83 52 5 chr4 90966124 90966568 -111361779 - MER4C LTR ERV1 0 465 1 231 247 171 65 chr4 90966704 90966874 -111361473 - MLT1L LTR MaLR -233 382 195 259 254 42 0 chr4 90967535 90967606 -111360741 - MIR SINE MIR -111 151 78 2277 84 0 29 chr4 90967688 90967996 -111360351 + AluSq SINE Alu 1 299 -14 2291 112 0 10 chr4 90968529 90968842 -111359505 + AluSx SINE Alu 3 312 0 256 271 21 0 chr4 90968918 90968966 -111359381 + L2 LINE L2 3137 3185 -87 311 300 196 12 chr4 90969287 90969527 -111358820 + L1MC4a LINE L1 4781 5064 -1082 2606 58 0 0 chr4 90970002 90970311 -111358036 - AluY SINE Alu -2 309 1 479 324 142 26 chr4 90970344 90970724 -111357623 + L1MC4a LINE L1 5472 5895 -1913 837 186 63 69 chr4 90971078 90971398 -111356949 + MSTD LTR MaLR 20 385 -11 2298 122 0 0 chr4 90971398 90971710 -111356637 + AluSx SINE Alu 1 312 0 1630 180 27 13 chr4 90971752 90972052 -111356295 - AluJb SINE Alu -5 307 4 413 219 47 137 chr4 90972163 90972304 -111356043 + L1ME4a LINE L1 5520 5616 -505 1781 97 26 15 chr4 90972304 90972571 -111355776 - AluSc SINE Alu -39 270 1 413 219 47 137 chr4 90972571 90972750 -111355597 + L1ME4a LINE L1 5616 5810 -311 1831 142 13 36 chr4 90972771 90973073 -111355274 + AluJb SINE Alu 6 300 -12 241 261 63 28 chr4 90973187 90973329 -111355018 + L1ME4a LINE L1 5973 6119 -2 341 317 93 19 chr4 90974026 90974187 -111354160 - MIR SINE MIR -67 195 23 203 283 0 0 chr4 90974880 90974926 -111353421 + MIR SINE MIR 216 261 -1 1861 152 10 0 chr4 90975647 90975944 -111352403 + AluSx SINE Alu 7 306 -6 4266 100 33 7 chr4 90976125 90976737 -111351610 + L1PB3 LINE L1 5527 6154 0 32 0 0 0 chr4 90976737 90976769 -111351578 + AT_rich Low_complexity Low_complexity 1 32 0 2101 130 3 0 chr4 90976769 90977070 -111351277 + AluSq SINE Alu 1 302 -11 520 206 31 0 chr4 90977706 90977803 -111350544 - FRAM SINE Alu -21 155 56 1559 178 27 7 chr4 90978275 90978568 -111349779 + AluJb SINE Alu 1 299 -13 182 146 55 109 chr4 90978568 90978623 -111349724 + MIR SINE MIR 81 132 -76 2038 211 73 33 chr4 90978653 90979199 -111349148 + L1ME1 LINE L1 5594 6161 -5 1448 167 47 60 chr4 90979294 90979420 -111348927 + AluJb SINE Alu 9 135 -177 8216 24 0 0 chr4 90979420 90980796 -111347551 + L1PA4 LINE L1 4780 6155 0 1448 167 47 60 chr4 90980796 90980968 -111347379 + AluJb SINE Alu 135 303 -9 906 146 6 32 chr4 90981006 90981164 -111347183 - FRAM SINE Alu -30 146 1 526 309 149 37 chr4 90981174 90981611 -111346736 - L2 LINE L2 0 3313 2828 516 38 0 0 chr4 90981643 90981747 -111346600 + L1P LINE L1 730 961 -5185 1535 136 16 19 chr4 90981916 90982173 -111346174 - AluY SINE Alu -21 290 35 2271 93 0 29 chr4 90982439 90982752 -111345595 + AluY SINE Alu 1 304 -7 837 185 63 69 chr4 90984131 90984451 -111343896 + MSTD LTR MaLR 20 385 -11 2298 122 0 0 chr4 90984451 90984763 -111343584 + AluSx SINE Alu 1 312 0 1911 180 3 0 chr4 90984804 90985110 -111343237 - AluJb SINE Alu -5 307 1 363 161 103 35 chr4 90985226 90985313 -111343034 + L1ME LINE L1 5520 5612 -509 1853 95 20 4 chr4 90985367 90985620 -111342727 - AluSc SINE Alu -39 270 14 2404 43 0 3 chr4 90985721 90986029 -111342318 - AluY SINE Alu 0 307 1 183 156 0 0 chr4 90986138 90986170 -111342177 + (TA)n Simple_repeat Simple_repeat 1 32 0 1925 201 97 48 chr4 90986487 90986866 -111341481 + MLT1F1 LTR MaLR 97 503 -64 1872 142 7 20 chr4 90986866 90987161 -111341186 + AluJb SINE Alu 5 295 -17 1925 201 97 48 chr4 90987161 90987223 -111341124 + MLT1F1 LTR MaLR 503 560 -7 297 295 0 0 chr4 90987557 90987635 -111340712 + (TCTCTG)n Simple_repeat Simple_repeat 6 83 0 192 375 115 29 chr4 90987849 90988057 -111340290 - MIR SINE MIR -23 239 14 225 307 145 37 chr4 90988415 90988767 -111339580 + L2 LINE L2 2078 2467 -847 397 213 44 155 chr4 90988773 90988911 -111339436 - MIR SINE MIR -15 247 161 2028 155 0 0 chr4 90988911 90989208 -111339139 + AluJb SINE Alu 1 297 -15 397 213 44 155 chr4 90989208 90989346 -111339001 - MIR SINE MIR -101 161 9 1976 152 0 0 chr4 90989942 90990238 -111338109 + AluSx SINE Alu 1 296 -16 799 129 9 0 chr4 90990249 90990365 -111337982 + AluJb SINE Alu 2 118 -194 25 31 0 0 chr4 90990365 90990397 -111337950 + AT_rich Low_complexity Low_complexity 1 32 0 910 185 0 0 chr4 90990513 90990670 -111337677 + FAM SINE Alu 19 175 -10 874 174 39 39 chr4 90990777 90990932 -111337415 + FRAM SINE Alu 1 155 -11 32 26 0 0 chr4 90991217 90991256 -111337091 + AT_rich Low_complexity Low_complexity 1 39 0 1414 199 10 36 chr4 90991374 90991675 -111336672 + AluJo SINE Alu 2 294 -18 2243 99 10 0 chr4 90991871 90992164 -111336183 - AluSx SINE Alu -15 297 2 1169 141 19 28 chr4 90992190 90992403 -111335944 + MLT1B LTR MaLR 1 211 -179 277 267 0 58 chr4 90992602 90992688 -111335659 + MIR SINE MIR 6 86 -176 519 245 13 171 chr4 90992734 90992818 -111335529 + L2 LINE L2 2662 2758 -555 2148 125 10 0 chr4 90992818 90993114 -111335233 - AluSx SINE Alu -13 299 1 519 245 13 171 chr4 90993114 90993223 -111335124 + L2 LINE L2 2758 2883 -430 2318 66 0 14 chr4 90993223 90993543 -111334804 - AluY SINE Alu 0 316 1 519 245 13 171 chr4 90993543 90993651 -111334696 + L2 LINE L2 2883 3006 -307 1363 190 89 124 chr4 90993651 90993973 -111334374 + MLT1C LTR MaLR 1 302 -165 2048 131 20 13 chr4 90993973 90994279 -111334068 + AluJo SINE Alu 3 310 -2 1363 190 89 124 chr4 90994279 90994440 -111333907 + MLT1C LTR MaLR 302 467 0 519 245 13 171 chr4 90994440 90994737 -111333610 + L2 LINE L2 3006 3253 -60 330 282 64 48 chr4 90994776 90994964 -111333383 + L1ME3A LINE L1 5965 6155 -15 1207 92 0 35 chr4 90995057 90995230 -111333117 + AluSc SINE Alu 1 167 -142 3035 134 11 89 chr4 90995242 90995924 -111332423 - LTR12 LTR ERV1 -145 2293 1 686 226 38 45 chr4 90996009 90996297 -111332050 - pTR5 LTR ERV1 -1410 1028 743 1106 71 0 0 chr4 90996297 90996438 -111331909 + AluSc SINE Alu 164 304 -5 632 244 0 0 chr4 90996445 90996564 -111331783 + FLAM_A SINE Alu 1 119 -14 634 164 91 0 chr4 90996676 90996786 -111331561 + MLT1B LTR MaLR 1 120 -270 1773 164 0 26 chr4 90996786 90996923 -111331424 + AluJo SINE Alu 1 140 -172 1968 122 14 35 chr4 90996923 90997212 -111331135 + AluSx SINE Alu 1 306 0 208 0 0 0 chr4 90997212 90997235 -111331112 + (TAAA)n Simple_repeat Simple_repeat 2 88 0 1773 164 0 26 chr4 90997235 90997400 -111330947 + AluJo SINE Alu 140 297 -15 224 321 44 22 chr4 90997791 90997928 -111330419 + MER5A DNA MER1_type 1 140 -49 1944 155 7 10 chr4 90997928 90998238 -111330109 + AluSx SINE Alu 1 309 -3 2234 118 0 13 chr4 90998240 90998553 -111329794 + AluSx SINE Alu 1 309 -3 294 268 87 98 chr4 90998622 90998805 -111329542 + MER5A DNA MER1_type 7 187 -2 1015 73 61 67 chr4 90998835 90999000 -111329347 + L1PA12 LINE L1 6005 6168 0 1907 123 68 3 chr4 90999177 90999470 -111328877 + AluSx SINE Alu 1 312 0 192 313 60 0 chr4 90999541 90999608 -111328739 + L2 LINE L2 3235 3305 -8 465 19 0 0 chr4 90999647 90999701 -111328646 + (CA)n Simple_repeat Simple_repeat 2 55 0 281 186 14 0 chr4 91000082 91000152 -111328195 + CT-rich Low_complexity Low_complexity 1 71 0 242 289 72 12 chr4 91000159 91000242 -111328105 - L2 LINE L2 -2 3311 3224 392 232 162 21 chr4 91000249 91000391 -111327956 - MLT2E LTR ERVL -83 545 384 228 282 39 29 chr4 91000405 91000508 -111327839 - MLT2E LTR ERVL -350 278 175 558 201 14 58 chr4 91000568 91000707 -111327640 - MLT2E LTR ERVL -485 143 11 216 0 0 0 chr4 91001376 91001400 -111326947 + (A)n Simple_repeat Simple_repeat 1 24 0 1739 116 109 14 chr4 91001642 91001917 -111326430 + AluSx SINE Alu 1 301 -11 2118 101 0 60 chr4 91002266 91002584 -111325763 + AluSc SINE Alu 1 299 -10 195 69 0 0 chr4 91003146 91003175 -111325172 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 1544 142 25 115 chr4 91003176 91003352 -111324995 - AluJb SINE Alu -18 294 159 2220 88 0 49 chr4 91003352 91003657 -111324690 - AluSp SINE Alu -23 290 1 1544 142 25 115 chr4 91003657 91003803 -111324544 - AluJb SINE Alu -153 159 1 351 250 69 56 chr4 91003816 91003960 -111324387 - MIR SINE MIR -105 157 12 506 282 13 13 chr4 91004077 91004226 -111324121 - L1MC4 LINE L1 -1242 6800 6652 391 234 89 33 chr4 91004242 91004406 -111323941 - L1MC4 LINE L1 -1191 6617 6502 1097 45 30 0 chr4 91005308 91005441 -111322906 - AluY SINE Alu -9 302 166 2385 87 0 7 chr4 91005874 91006183 -111322164 - AluSg SINE Alu -3 307 1 363 189 31 71 chr4 91006401 91006528 -111321819 - L1MD3 LINE L1 -1434 6561 6440 1901 199 29 19 chr4 91006861 91006984 -111321363 + MLT1C LTR MaLR 53 173 -294 2320 103 3 13 chr4 91006984 91007296 -111321051 + AluSp SINE Alu 1 309 -4 1901 199 29 19 chr4 91007296 91007583 -111320764 + MLT1C LTR MaLR 173 467 0 2631 276 49 27 chr4 91007586 91008404 -111319943 + ERVL LTR ERVL 3833 4668 -1096 394 159 14 0 chr4 91008404 91008473 -111319874 - MLT1A1 LTR MaLR 0 365 296 1557 196 7 10 chr4 91008480 91008776 -111319571 + AluJo SINE Alu 1 295 -17 706 200 17 8 chr4 91008785 91009147 -111319200 + GA-rich Low_complexity Low_complexity 1 365 0 1363 213 66 36 chr4 91009150 91009484 -111318863 - MER7A DNA MER2_type -1 345 4 1357 167 19 33 chr4 91009484 91009749 -111318598 - MLT1A1 LTR MaLR -104 261 1 1361 307 18 18 chr4 91009794 91010240 -111318107 + ERVL LTR ERVL 4712 5157 -607 2168 147 48 8 chr4 91010240 91010277 -111318070 - MLT2B3 LTR ERVL 0 554 520 308 24 24 0 chr4 91010277 91010318 -111318029 + (TG)n Simple_repeat Simple_repeat 1 42 0 2168 147 48 8 chr4 91010318 91010602 -111317745 - MLT2B3 LTR ERVL -34 520 215 270 0 0 0 chr4 91010602 91010632 -111317715 + (GA)n Simple_repeat Simple_repeat 1 30 0 2168 147 48 8 chr4 91010632 91010663 -111317684 - MLT2B3 LTR ERVL -339 215 187 751 186 23 128 chr4 91010663 91010798 -111317549 - MLT-int LTR MaLR -1078 657 560 2153 123 0 10 chr4 91010798 91011108 -111317239 - AluSx SINE Alu -5 307 1 751 186 23 128 chr4 91011108 91011230 -111317117 - MLT-int LTR MaLR -1175 560 427 1889 179 122 5 chr4 91012065 91012145 -111316202 - L1MB8 LINE L1 -6 6172 6093 913 278 191 2 chr4 91012145 91012559 -111315788 - L1MD1 LINE L1 -152 6090 5599 22 0 0 0 chr4 91012681 91012703 -111315644 + AT_rich Low_complexity Low_complexity 1 22 0 2295 107 3 0 chr4 91013158 91013458 -111314889 - AluSx SINE Alu -11 301 1 234 240 136 26 chr4 91013526 91013680 -111314667 - L1MC5 LINE L1 -167 7794 7624 2134 116 16 7 chr4 91013697 91014007 -111314340 - AluSq SINE Alu 0 313 1 247 271 60 60 chr4 91014049 91014182 -111314165 + MIR SINE MIR 63 195 -67 431 266 89 32 chr4 91014220 91014378 -111313969 - MIR SINE MIR -74 188 22 180 0 0 0 chr4 91015996 91016016 -111312331 + (T)n Simple_repeat Simple_repeat 1 20 0 251 309 103 32 chr4 91016065 91016191 -111312156 - MIR3 SINE MIR -65 143 9 271 301 190 12 chr4 91016360 91016523 -111311824 + MIR SINE MIR 49 240 -22 356 0 23 0 chr4 91016790 91016834 -111311513 + (TTA)n Simple_repeat Simple_repeat 2 46 0 612 158 21 257 chr4 91016955 91017129 -111311218 + MIR SINE MIR 4 217 -45 1437 184 112 4 chr4 91017129 91017396 -111310951 - AluJb SINE Alu -5 297 2 1239 197 84 46 chr4 91017404 91017688 -111310659 - AluJb SINE Alu -7 295 1 612 158 21 257 chr4 91017688 91017839 -111310508 + MIR SINE MIR 225 259 -3 258 275 0 0 chr4 91017872 91017941 -111310406 - L1ME LINE L1 -365 5799 5731 2148 100 13 17 chr4 91017941 91018242 -111310105 - AluSq SINE Alu -13 300 1 249 143 0 0 chr4 91018977 91019019 -111309328 + L2 LINE L2 3272 3313 0 7857 38 16 0 chr4 91020041 91021035 -111307312 - L1PA5 LINE L1 -7 6147 5150 13416 30 3 1 chr4 91021035 91022606 -111305741 + L1PA5 LINE L1 3577 5151 -995 1796 180 3 3 chr4 91022704 91023009 -111305338 + AluJo SINE Alu 1 305 -7 1686 136 48 4 chr4 91023312 91023563 -111304784 - AluSx SINE Alu -50 262 1 600 250 42 18 chr4 91023601 91023769 -111304578 + MIR SINE MIR 2 173 -89 4153 141 30 12 chr4 91024299 91024958 -111303389 - LTR51 LTR ERV1 0 671 1 2278 95 0 13 chr4 91025331 91025635 -111302712 + AluSq SINE Alu 1 300 -13 25 0 0 0 chr4 91025684 91025709 -111302638 + AT_rich Low_complexity Low_complexity 1 25 0 715 211 97 46 chr4 91025712 91025887 -111302460 - AluJo SINE Alu -22 290 107 647 246 24 36 chr4 91025979 91026231 -111302116 - L1M4c LINE L1 -4206 2178 1930 2062 131 31 0 chr4 91026259 91026549 -111301798 - AluSx SINE Alu -13 299 1 995 231 41 17 chr4 91026549 91026843 -111301504 - L1M4c LINE L1 -4541 1843 1543 1551 192 7 7 chr4 91026996 91027287 -111301060 + AluJb SINE Alu 4 294 -18 540 271 139 39 chr4 91028236 91028517 -111299830 + L2 LINE L2 3005 3313 0 2144 119 3 13 chr4 91029557 91029860 -111298487 + AluSq SINE Alu 1 300 -13 25 0 0 0 chr4 91029909 91029934 -111298413 + AT_rich Low_complexity Low_complexity 1 25 0 742 206 97 46 chr4 91029937 91030112 -111298235 - AluJo SINE Alu -22 290 107 1792 224 113 12 chr4 91030204 91030484 -111297863 - L1M4c LINE L1 -4206 2178 1928 2076 128 31 0 chr4 91030484 91030774 -111297573 - AluSx SINE Alu -13 299 1 1792 224 113 12 chr4 91030774 91031061 -111297286 - L1M4c LINE L1 -4456 1928 1554 1042 182 99 0 chr4 91031067 91031309 -111297038 - AluSx SINE Alu -18 294 29 2709 214 42 72 chr4 91031512 91031547 -111296800 - L1M4c LINE L1 -4516 1787 1752 2028 156 0 9 chr4 91031547 91031862 -111296485 + AluJo SINE Alu 1 312 0 2709 214 42 72 chr4 91031862 91032743 -111295604 - L1M4c LINE L1 -4551 1752 800 653 296 75 58 chr4 91032895 91033295 -111295052 - L1M4c LINE L1 -5215 1088 413 283 227 34 136 chr4 91033393 91033569 -111294778 - MER102b DNA MER1_type -39 302 145 686 227 10 67 chr4 91033638 91033832 -111294515 - L1MC5 LINE L1 -48 7913 7731 236 341 34 0 chr4 91034819 91034907 -111293440 + MIR SINE MIR 16 106 -102 2039 124 17 3 chr4 91035501 91035800 -111292547 - AluSx SINE Alu -9 303 1 825 165 8 15 chr4 91035852 91035985 -111292362 + FLAM_C SINE Alu 2 133 0 34 0 0 0 chr4 91036087 91036121 -111292226 + AT_rich Low_complexity Low_complexity 1 34 0 1993 250 68 68 chr4 91036147 91036316 -111292031 - HAL1 LINE L1 -105 2402 2234 2350 105 0 0 chr4 91036316 91036621 -111291726 - AluSx SINE Alu -7 305 1 1993 250 68 68 chr4 91036621 91036741 -111291606 - HAL1 LINE L1 -273 2234 2115 1490 157 54 135 chr4 91036741 91037148 -111291199 - MLT1A2 LTR MaLR 0 374 1 1993 250 68 68 chr4 91037148 91037732 -111290615 - HAL1 LINE L1 -392 2115 1525 2250 123 0 0 chr4 91037732 91038042 -111290305 - AluSx SINE Alu -2 310 1 1993 250 68 68 chr4 91038042 91038193 -111290154 - HAL1 LINE L1 -981 1526 1376 728 284 90 9 chr4 91038199 91038421 -111289926 + MIR SINE MIR 2 241 -21 868 245 126 43 chr4 91038450 91038919 -111289428 - HAL1 LINE L1 -1136 1371 864 284 319 101 39 chr4 91038919 91039257 -111289090 - L2 LINE L2 -697 2617 2259 2197 106 0 3 chr4 91039434 91039727 -111288620 - AluSg SINE Alu -18 292 1 1113 80 0 7 chr4 91039727 91039865 -111288482 - AluSq/x SINE Alu -175 137 1 1821 174 3 19 chr4 91039997 91040314 -111288033 - AluSx SINE Alu 0 312 1 836 205 0 0 chr4 91041611 91041762 -111286585 - FRAM SINE Alu -15 161 11 961 261 113 29 chr4 91041808 91042188 -111286159 + L2 LINE L2 2395 2806 -508 24 0 0 0 chr4 91042192 91042216 -111286131 + AT_rich Low_complexity Low_complexity 1 24 0 34996 32 4 0 chr4 91042216 91047161 -111281186 - L1PA3 LINE L1 -4 6151 1198 2173 114 10 3 chr4 91047315 91047623 -111280724 + AluSx SINE Alu 1 310 -2 1043 153 138 41 chr4 91047830 91048026 -111280321 + MER20 DNA MER1_type 1 215 -4 258 268 14 0 chr4 91048033 91048104 -111280243 - L1MC5 LINE L1 -590 7371 7300 403 147 82 50 chr4 91048127 91048257 -111280090 + L1ME3A LINE L1 6030 6162 0 195 42 0 0 chr4 91051021 91051045 -111277302 + (T)n Simple_repeat Simple_repeat 1 24 0 2082 131 46 3 chr4 91051359 91051688 -111276659 + L1PA15 LINE L1 5822 6164 -1 794 234 40 22 chr4 91051689 91051916 -111276431 + MIR SINE MIR 28 258 -4 465 170 30 50 chr4 91052028 91052128 -111276219 - Tigger7 DNA MER2_type -1 2486 2389 * 1680 174 8 0 chr4 91052126 91052391 -111275956 - Tigger7 DNA MER2_type -2220 267 1 314 258 55 70 chr4 91052568 91052696 -111275651 + L2 LINE L2 3180 3305 -8 199 271 165 0 chr4 91052799 91052884 -111275463 - L2 LINE L2 -5 3267 3169 2477 92 0 0 chr4 91053088 91053392 -111274955 - AluSg SINE Alu -6 304 1 433 132 0 40 chr4 91053445 91053521 -111274826 - AluJ/FRAM SINE Alu -7 305 233 2223 95 7 3 chr4 91054013 91054307 -111274040 - AluSx SINE Alu -17 295 1 1258 244 63 89 chr4 91054536 91054835 -111273512 + L1MC4a LINE L1 5363 5668 -2140 2152 122 0 0 chr4 91054835 91055121 -111273226 - AluSx SINE Alu -26 286 1 1258 244 63 89 chr4 91055121 91055256 -111273091 + L1MC4a LINE L1 5668 5805 -2003 722 219 88 12 chr4 91055256 91055416 -111272931 + FAM SINE Alu 1 172 -3 1258 244 63 89 chr4 91055416 91055644 -111272703 + L1MC4a LINE L1 5805 6009 -1799 356 149 0 17 chr4 91055786 91055858 -111272489 + Alu SINE Alu 1 53 -249 2095 93 0 0 chr4 91055915 91056185 -111272162 - AluY SINE Alu -4 307 38 4270 187 65 63 chr4 91056221 91056274 -111272073 + Tigger6a DNA MER2_type 2 53 -1544 1945 154 3 7 chr4 91056274 91056579 -111271768 - AluSx SINE Alu -8 304 1 4270 187 65 63 chr4 91056579 91057333 -111271014 + Tigger6a DNA MER2_type 53 804 -793 2040 158 19 11 chr4 91057333 91057485 -111270862 + MLT1A1 LTR MaLR 1 150 -215 2122 113 43 10 chr4 91057485 91057785 -111270562 + AluSx SINE Alu 1 310 -2 2040 158 19 11 chr4 91057785 91057994 -111270353 + MLT1A1 LTR MaLR 150 365 0 4270 187 65 63 chr4 91057994 91058017 -111270330 + Tigger6a DNA MER2_type 804 825 -772 1755 128 50 75 chr4 91058017 91058155 -111270192 + AluSx SINE Alu 1 141 -171 2173 109 6 16 chr4 91058155 91058467 -111269880 + AluSp SINE Alu 1 309 -4 1755 128 50 75 chr4 91058467 91058648 -111269699 + AluSx SINE Alu 141 312 0 4270 187 65 63 chr4 91058648 91058666 -111269681 + Tigger6a DNA MER2_type 825 841 -756 2590 69 0 0 chr4 91058666 91058972 -111269375 + AluY SINE Alu 2 307 -4 4270 187 65 63 chr4 91058972 91059196 -111269151 + Tigger6a DNA MER2_type 841 1079 -4 1047 148 35 0 chr4 91059231 91059400 -111268947 - AluSg/x SINE Alu -7 305 131 2115 140 0 7 chr4 91059844 91060152 -111268195 + AluSx SINE Alu 1 306 -6 221 289 0 103 chr4 91060650 91060747 -111267600 + L2 LINE L2 2945 3031 -241 1581 176 3 73 chr4 91060747 91061077 -111267270 - AluJb SINE Alu -3 309 3 2088 122 27 3 chr4 91061081 91061376 -111266971 - AluSc SINE Alu -7 302 1 2378 84 7 0 chr4 91061397 91061695 -111266652 - AluSp SINE Alu -13 300 1 347 198 30 50 chr4 91061701 91061802 -111266545 + LTR41 LTR ERVL 669 767 -6 195 129 0 0 chr4 91063011 91063042 -111265305 + (T)n Simple_repeat Simple_repeat 1 31 0 319 321 153 52 chr4 91064138 91065090 -111263257 - L2 LINE L2 -217 3055 1959 2282 106 0 3 chr4 91066160 91066462 -111261885 + AluY SINE Alu 3 303 -8 2397 70 0 0 chr4 91066560 91066859 -111261488 + AluY SINE Alu 1 299 -12 27 62 0 0 chr4 91067040 91067088 -111261259 + AT_rich Low_complexity Low_complexity 1 48 0 711 183 0 36 chr4 91067168 91067305 -111261042 + FLAM_C SINE Alu 2 133 -10 774 282 75 19 chr4 91067430 91068064 -111260283 - L2 LINE L2 -5 3308 2642 204 370 72 36 chr4 91068557 91068806 -111259541 - L2 LINE L2 -9 3263 3006 1790 171 20 3 chr4 91068817 91069122 -111259225 + AluJb SINE Alu 2 311 -1 970 202 92 25 chr4 91069289 91069499 -111258848 + MER33 DNA MER1_type 1 219 -2366 1893 166 0 13 chr4 91069499 91069801 -111258546 - AluSx SINE Alu -14 298 1 970 202 92 25 chr4 91069801 91069905 -111258442 + MER33 DNA MER1_type 219 315 -9 369 195 9 35 chr4 91070668 91070781 -111257566 + CT-rich Low_complexity Low_complexity 3 112 0 1987 119 7 16 chr4 91071108 91071411 -111256936 - AluSq SINE Alu -13 300 1 1005 172 0 0 chr4 91072208 91072371 -111255976 - AluJb SINE Alu -8 304 142 501 47 0 0 chr4 91072666 91072730 -111255617 + (TTTAA)n Simple_repeat Simple_repeat 4 67 0 2079 107 7 14 chr4 91072730 91073011 -111255336 - AluSx SINE Alu -31 281 1 550 234 112 57 chr4 91073095 91073496 -111254851 + L1MC5 LINE L1 7273 7695 -266 1106 175 90 14 chr4 91073513 91073736 -111254611 - AluJo SINE Alu -23 289 50 2119 113 28 0 chr4 91074313 91074604 -111253743 + AluSx SINE Alu 1 299 -13 217 35 0 0 chr4 91074645 91074674 -111253673 - MER5A DNA MER1_type -68 121 93 2064 139 47 30 chr4 91074674 91075076 -111253271 - L1MA4 LINE L1 0 6300 5892 7019 74 18 1 chr4 91075102 91076831 -111251516 + L1PA7 LINE L1 4411 6160 0 799 169 0 22 chr4 91076841 91076977 -111251370 + FLAM_C SINE Alu 1 133 0 26 0 0 0 chr4 91077432 91077458 -111250889 + AT_rich Low_complexity Low_complexity 1 26 0 2274 95 44 0 chr4 91077510 91077806 -111250541 + AluSq SINE Alu 1 309 -4 2382 74 0 3 chr4 91077808 91078105 -111250242 + AluY SINE Alu 6 301 -10 180 0 0 0 chr4 91078475 91078495 -111249852 + (T)n Simple_repeat Simple_repeat 1 20 0 513 304 112 13 chr4 91078785 91079009 -111249338 + MIR SINE MIR 4 249 -13 325 306 43 81 chr4 91080260 91080323 -111248024 - MER5A DNA MER1_type -2 187 123 2194 111 0 7 chr4 91080323 91080611 -111247736 + AluSg SINE Alu 1 286 -24 325 306 43 81 chr4 91080611 91080733 -111247614 - MER5A DNA MER1_type -66 123 9 212 330 42 17 chr4 91081336 91081454 -111246893 - L2 LINE L2 -219 3053 2933 1815 165 28 3 chr4 91081598 91081883 -111246464 + AluJb SINE Alu 1 292 -20 7574 40 13 10 chr4 91081920 91083388 -111244959 + SVA Other Other 1 1392 0 1987 114 87 94 chr4 91083391 91083558 -111244789 + MSTC LTR MaLR 28 195 -233 2366 88 0 0 chr4 91083558 91083852 -111244495 - AluSx SINE Alu -18 294 1 1987 114 87 94 chr4 91083852 91084088 -111244259 + MSTC LTR MaLR 195 428 0 2420 88 0 0 chr4 91084121 91084415 -111243932 + AluY SINE Alu 1 294 -17 2207 103 40 3 chr4 91084467 91084767 -111243580 + AluSp SINE Alu 1 311 -2 292 297 178 15 chr4 91084796 91084998 -111243349 + L3 LINE CR1 1307 1541 -36 1470 189 34 6 chr4 91086511 91086839 -111241508 + L1MD3 LINE L1 6771 7107 -888 928 211 127 27 chr4 91086896 91087240 -111241107 + L1MD3 LINE L1 7417 7995 0 324 0 0 0 chr4 91087247 91087283 -111241064 + (TG)n Simple_repeat Simple_repeat 1 36 0 289 228 0 0 chr4 91087484 91087541 -111240806 - Charlie2a DNA MER1_type 0 2862 2806 258 258 32 0 chr4 91087542 91087604 -111240743 - Charlie2a DNA MER1_type -1298 1564 1501 340 174 197 122 chr4 91087749 91087849 -111240498 - Charlie2a DNA MER1_type -2553 309 218 2432 71 0 3 chr4 91087849 91088157 -111240190 - AluSc SINE Alu -2 307 1 340 174 197 122 chr4 91088157 91088269 -111240078 - Charlie2a DNA MER1_type -2644 218 81 1669 154 56 36 chr4 91088731 91089037 -111239310 - AluJo SINE Alu 0 312 1 1968 127 81 0 chr4 91089067 91089350 -111238997 - AluSx SINE Alu -6 306 1 1510 198 47 13 chr4 91089897 91090195 -111238152 - AluJo SINE Alu -4 308 1 392 291 20 34 chr4 91090644 91090792 -111237555 - MER5A DNA MER1_type -1 188 43 4381 133 119 165 chr4 91090950 91091658 -111236689 - Charlie1a DNA MER1_type -1354 1407 799 1499 160 122 11 chr4 91091658 91091920 -111236427 - AluSx SINE Alu -21 291 1 4381 133 119 165 chr4 91091920 91092681 -111235666 - Charlie1a DNA MER1_type -1962 799 5 1163 227 107 37 chr4 91095199 91095630 -111232717 + Charlie4a DNA MER1_type 48 508 0 443 267 31 6 chr4 91095759 91095920 -111232427 - MIR SINE MIR -17 245 81 2338 60 40 13 chr4 91097446 91097748 -111230599 + AluY SINE Alu 1 310 -1 518 65 0 0 chr4 91098889 91098951 -111229396 - AluSq/x SINE Alu -189 124 63 2383 69 13 0 chr4 91099667 91099973 -111228374 - AluSp SINE Alu -3 310 1 379 277 18 9 chr4 91100400 91100512 -111227835 - MER5A DNA MER1_type 0 189 77 2052 96 0 0 chr4 91102533 91102794 -111225553 + AluSq SINE Alu 1 261 -52 1877 72 0 8 chr4 91102966 91103201 -111225146 + AluY SINE Alu 64 296 -15 1182 195 105 151 chr4 91103206 91103837 -111224510 - L1MB7 LINE L1 -16 6168 5567 241 247 0 82 chr4 91104864 91104937 -111223410 - L2 LINE L2 -82 3190 3124 507 169 0 0 chr4 91105158 91105235 -111223112 - FRAM SINE Alu -23 153 77 21 0 0 0 chr4 91105351 91105372 -111222975 + AT_rich Low_complexity Low_complexity 1 21 0 4525 138 136 33 chr4 91105852 91106695 -111221652 + MER21A LTR ERV1 2 931 0 1983 130 4 0 chr4 91107117 91107418 -111220929 - AluY SINE Alu 0 304 3 2242 101 0 13 chr4 91108558 91108866 -111219481 + AluSx SINE Alu 1 304 -8 310 275 9 37 chr4 91109182 91109291 -111219056 + L1MC4 LINE L1 6614 6719 -1323 420 221 7 15 chr4 91109291 91109427 -111218920 + (TA)n Simple_repeat Simple_repeat 2 136 0 37 0 0 0 chr4 91109510 91109547 -111218800 + AT_rich Low_complexity Low_complexity 1 37 0 1553 166 30 23 chr4 91109555 91109820 -111218527 - AluJo SINE Alu -44 268 2 194 273 172 23 chr4 91110633 91110761 -111217586 - MIR SINE MIR -2 260 114 2014 103 14 20 chr4 91111222 91111514 -111216833 - AluSx SINE Alu -22 290 1 438 272 101 25 chr4 91111856 91112014 -111216333 - MIR SINE MIR 0 262 93 934 149 35 50 chr4 91112183 91112384 -111215963 + MER20 DNA MER1_type 3 200 -19 323 286 36 0 chr4 91112602 91112686 -111215661 - MIR SINE MIR -156 106 20 890 102 126 0 chr4 91112701 91112855 -111215492 + AluSp SINE Alu 142 311 0 1019 129 0 7 chr4 91112872 91113019 -111215328 - AluSq/x SINE Alu -166 146 1 227 175 0 0 chr4 91114349 91114389 -111213958 + MER46A DNA MER2_type 25 64 -172 1091 108 17 40 chr4 91114406 91114582 -111213765 - AluSg/x SINE Alu -6 306 135 843 181 69 53 chr4 91114582 91114770 -111213577 + MER46A DNA MER2_type 46 236 0 351 240 91 0 chr4 91114929 91115039 -111213308 - L1ME2 LINE L1 0 6162 6044 1332 209 0 4 chr4 91116806 91117031 -111211316 - MER58A DNA MER1_type 0 224 1 216 267 17 0 chr4 91117897 91117957 -111210390 + L2 LINE L2 2976 3036 -236 1800 153 34 7 chr4 91119487 91119782 -111208565 + AluJo SINE Alu 1 303 -9 396 276 105 44 chr4 91120831 91121059 -111207288 - L2 LINE L2 -397 2917 2676 232 288 171 27 chr4 91121526 91121637 -111206710 - L2 LINE L2 -5 3267 3141 2428 77 0 0 chr4 91121904 91122202 -111206145 + AluY SINE Alu 1 298 -13 198 296 12 25 chr4 91122241 91122322 -111206025 - L2 LINE L2 -569 2745 2666 903 184 6 6 chr4 91123469 91123627 -111204720 - AluSc SINE Alu -23 286 129 2203 109 0 3 chr4 91123945 91124238 -111204109 - AluSx SINE Alu -20 292 1 2041 92 35 18 chr4 91126510 91126814 -111201533 - AluSx SINE Alu 0 312 1 2117 104 0 26 chr4 91127184 91127492 -111200855 - AluSq SINE Alu -13 300 1 1957 103 21 7 chr4 91127492 91127781 -111200566 - AluSx SINE Alu -8 304 11 696 91 0 0 chr4 91127882 91127970 -111200377 - AluS SINE Alu -224 89 2 354 188 78 62 chr4 91127980 91128108 -111200239 + MIR SINE MIR 110 239 -23 525 233 98 0 chr4 91128201 91128334 -111200013 + MER5A DNA MER1_type 43 188 -1 2156 115 17 0 chr4 91128527 91128823 -111199524 + AluSx SINE Alu 1 301 -11 2265 100 3 3 chr4 91130581 91130890 -111197457 - AluSc SINE Alu 0 309 1 333 269 59 0 chr4 91134604 91134723 -111193624 - L1ME2 LINE L1 -19 6145 6020 23 68 0 0 chr4 91136768 91136812 -111191535 + AT_rich Low_complexity Low_complexity 1 44 0 223 313 169 50 chr4 91137845 91138005 -111190342 - MIR3 SINE MIR -1 207 29 2180 109 0 29 chr4 91138220 91138533 -111189814 - AluSc SINE Alu -5 304 1 583 291 77 37 chr4 91138533 91138911 -111189436 - L2 LINE L2 -11 3302 2910 1205 188 23 35 chr4 91138916 91139177 -111189170 + AluJb SINE Alu 26 283 -29 1074 291 78 58 chr4 91139213 91139907 -111188440 - L2 LINE L2 -414 2900 2193 535 266 74 71 chr4 91140417 91140782 -111187565 - L2 LINE L2 -9 3304 2939 271 167 0 19 chr4 91140876 91140936 -111187411 - MER5B DNA MER1_type -6 172 122 923 208 16 16 chr4 91141782 91141974 -111186373 - AluJo SINE Alu -35 277 86 690 281 60 23 chr4 91143616 91143833 -111184514 - MIR SINE MIR -24 238 14 277 236 0 65 chr4 91144193 91144287 -111184060 + MIR SINE MIR 81 169 -39 246 241 94 52 chr4 91144850 91145033 -111183314 - MIR SINE MIR -50 212 17 627 334 140 35 chr4 91145375 91146441 -111181906 + L2 LINE L2 1603 2780 -534 2431 84 13 0 chr4 91147345 91147654 -111180693 + AluSq SINE Alu 1 313 0 388 247 280 21 chr4 91148307 91148493 -111179854 + MER102a DNA MER1_type 74 307 -23 1728 225 19 19 chr4 91148918 91149283 -111179064 - MLT1A1 LTR MaLR 0 365 1 396 338 60 30 chr4 91149706 91149940 -111178407 + MIR SINE MIR 5 245 -17 2112 98 9 19 chr4 91150034 91150350 -111177997 - AluSp SINE Alu 0 313 1 1766 143 28 14 chr4 91151271 91151408 -111176939 + AluJb SINE Alu 1 135 -177 2219 105 24 3 chr4 91151408 91151703 -111176644 + AluSq SINE Alu 2 302 -11 1766 143 28 14 chr4 91151703 91151852 -111176495 + AluJb SINE Alu 135 291 -21 2038 100 88 20 chr4 91151900 91152241 -111176106 - THE1B LTR MaLR 0 364 1 1251 211 4 23 chr4 91153154 91153420 -111174927 + AluJo SINE Alu 44 304 -8 207 179 0 71 chr4 91154036 91154092 -111174255 - MIR SINE MIR -14 248 197 189 0 0 0 chr4 91156081 91156102 -111172245 + (T)n Simple_repeat Simple_repeat 1 21 0 472 203 32 20 chr4 91156214 91156472 -111171875 + CT-rich Low_complexity Low_complexity 1 261 0 2096 93 3 75 chr4 91156624 91156807 -111171540 - AluSg SINE Alu -12 298 146 2095 128 0 0 chr4 91156807 91157105 -111171242 - AluSc SINE Alu -9 300 3 2096 93 3 75 chr4 91157105 91157242 -111171105 - AluSg SINE Alu -164 146 1 21 0 0 0 chr4 91157979 91158000 -111170347 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 91158311 91158332 -111170015 + AT_rich Low_complexity Low_complexity 1 21 0 2437 60 0 3 chr4 91158885 91159186 -111169161 + AluY SINE Alu 1 300 -11 27 0 0 0 chr4 91159308 91159335 -111169012 + AT_rich Low_complexity Low_complexity 1 27 0 1905 121 3 37 chr4 91159335 91159632 -111168715 - AluSx SINE Alu -25 287 1 270 0 0 0 chr4 91160081 91160111 -111168236 + (A)n Simple_repeat Simple_repeat 1 30 0 198 167 0 0 chr4 91160763 91160799 -111167548 + (TG)n Simple_repeat Simple_repeat 2 37 0 274 250 26 0 chr4 91162124 91162200 -111166147 + (TA)n Simple_repeat Simple_repeat 2 79 0 222 329 165 24 chr4 91162724 91162894 -111165453 - L2 LINE L2 -4 3268 3075 196 224 0 20 chr4 91163832 91163881 -111164466 - MIR SINE MIR -54 208 161 1125 268 98 38 chr4 91164328 91164984 -111163363 - L1MC4a LINE L1 -1692 6116 5422 321 306 44 44 chr4 91165743 91165903 -111162444 - MIR SINE MIR -68 194 35 218 277 27 71 chr4 91166429 91166541 -111161806 + MIR SINE MIR 61 167 -95 247 178 96 27 chr4 91166559 91166632 -111161715 + MIR SINE MIR 123 200 -62 21 0 0 0 chr4 91166831 91166852 -111161495 + AT_rich Low_complexity Low_complexity 1 21 0 625 169 76 17 chr4 91167341 91167459 -111160888 + FLAM_A SINE Alu 1 125 -8 635 209 51 60 chr4 91167752 91167941 -111160406 + L1MC4 LINE L1 7830 8018 -24 2316 82 7 3 chr4 91167941 91168245 -111160102 - AluY SINE Alu -6 305 1 635 209 51 60 chr4 91168245 91168270 -111160077 + L1MC4 LINE L1 8018 8042 0 39 0 0 0 chr4 91169306 91169345 -111159002 + AT_rich Low_complexity Low_complexity 1 39 0 975 135 0 0 chr4 91169371 91169512 -111158835 - AluJo SINE Alu -171 141 1 183 80 0 0 chr4 91170141 91170166 -111158181 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1064 157 0 17 chr4 91170591 91170763 -111157584 - AluJb SINE Alu -57 255 87 1763 133 0 38 chr4 91171040 91171395 -111156952 + AluSx SINE Alu 1 344 0 2009 116 35 0 chr4 91172534 91172819 -111155528 - AluSx SINE Alu -17 295 1 415 233 10 37 chr4 91173373 91173500 -111154847 + MIR3 SINE MIR 66 188 -20 269 291 264 0 chr4 91173983 91174093 -111154254 - L2 LINE L2 0 3272 3134 315 323 8 16 chr4 91174147 91174274 -111154073 - L2 LINE L2 -311 2961 2836 999 122 58 6 chr4 91175384 91175540 -111152807 - AluSg/x SINE Alu -13 299 136 1488 121 132 19 chr4 91175542 91175827 -111152520 - AluSg1 SINE Alu 0 309 1 191 318 93 19 chr4 91175878 91175985 -111152362 + MIR3 SINE MIR 68 182 -26 1961 147 7 33 chr4 91177516 91177823 -111150524 + AluJb SINE Alu 1 299 -13 23 54 0 0 chr4 91177854 91177891 -111150456 + AT_rich Low_complexity Low_complexity 1 37 0 2359 88 0 7 chr4 91177901 91178208 -111150139 + AluSc SINE Alu 1 305 -4 1882 150 7 0 chr4 91178781 91179074 -111149273 + AluJb SINE Alu 1 295 -17 421 224 12 0 chr4 91179321 91179406 -111148941 + MER58A DNA MER1_type 18 103 -4 287 231 15 0 chr4 91179413 91179478 -111148869 + MER58A DNA MER1_type 159 224 0 198 358 111 33 chr4 91180609 91180852 -111147495 + L2 LINE L2 2565 2826 -488 270 361 183 20 chr4 91181039 91181241 -111147106 + L2 LINE L2 3038 3272 0 2044 136 7 3 chr4 91181894 91182196 -111146151 - AluSq SINE Alu -10 303 1 435 82 0 0 chr4 91183074 91183135 -111145212 - Alu SINE Alu -11 301 241 847 171 0 0 chr4 91183162 91183302 -111145045 - FLAM_C SINE Alu -3 140 1 774 185 40 29 chr4 91183312 91183485 -111144862 - FAM SINE Alu 0 175 1 690 172 9 9 chr4 91183556 91183672 -111144675 - FLAM_A SINE Alu -21 121 6 1966 147 7 3 chr4 91186180 91186479 -111141868 - AluSx SINE Alu -12 300 1 194 341 142 49 chr4 91186481 91186686 -111141661 - L2 LINE L2 -29 3243 3020 324 198 170 38 chr4 91187362 91187468 -111140879 + L2 LINE L2 3175 3294 -19 1604 179 10 28 chr4 91188075 91188366 -111139981 + AluJb SINE Alu 14 299 -13 1660 164 57 0 chr4 91190895 91191176 -111137171 + AluJb SINE Alu 1 297 -15 294 197 33 0 chr4 91191874 91191935 -111136412 - MIR SINE MIR -16 246 184 2331 90 0 0 chr4 91192871 91193159 -111135188 + AluSx SINE Alu 1 288 -24 873 216 108 10 chr4 91194437 91194641 -111133706 - MER58A DNA MER1_type 0 224 1 1982 107 119 3 chr4 91196975 91197200 -111131147 - L1MA3 LINE L1 -3 6302 6022 437 34 17 0 chr4 91197200 91197259 -111131088 + (TTTTG)n Simple_repeat Simple_repeat 4 63 0 1982 107 119 3 chr4 91197259 91197378 -111130969 - L1MA3 LINE L1 -283 6022 5918 2748 6 0 31 chr4 91197769 91198087 -111130260 - AluY SINE Alu -3 308 1 23 0 0 29 chr4 91198097 91198113 -111130234 + AT_rich Low_complexity Low_complexity 1 16 -17 2457 97 0 0 chr4 91198113 91198424 -111129923 - AluSx SINE Alu -1 311 1 23 0 0 29 chr4 91198424 91198441 -111129906 + AT_rich Low_complexity Low_complexity 16 33 0 1582 160 56 4 chr4 91200061 91200330 -111128017 - AluJo SINE Alu -20 292 10 907 155 7 0 chr4 91200509 91200651 -111127696 + FRAM SINE Alu 20 162 -14 1773 147 7 26 chr4 91202379 91202686 -111125661 - AluJb SINE Alu -11 301 1 204 40 0 0 chr4 91203601 91203626 -111124721 + (TG)n Simple_repeat Simple_repeat 1 25 0 246 250 331 22 chr4 91204185 91204321 -111124026 - MER5B DNA MER1_type 0 178 1 22 0 0 0 chr4 91205245 91205267 -111123080 + AT_rich Low_complexity Low_complexity 1 22 0 1308 144 136 0 chr4 91205295 91205531 -111122816 - AluJo SINE Alu -23 289 22 1178 167 124 45 chr4 91205533 91205894 -111122453 - MER51A LTR ERV1 -11 623 1 260 146 236 0 chr4 91205894 91205935 -111122412 - AluSp SINE Alu -121 182 129 1747 164 27 0 chr4 91206066 91206358 -111121989 + AluJo SINE Alu 1 300 -12 224 295 26 0 chr4 91207154 91207232 -111121115 - MIR3 SINE MIR 0 208 129 407 165 13 0 chr4 91209552 91209631 -111118716 - Charlie5 DNA MER1_type -29 2583 2504 234 0 0 0 chr4 91209651 91209677 -111118670 + (A)n Simple_repeat Simple_repeat 1 26 0 2041 129 11 0 chr4 91209677 91209964 -111118383 - AluSx SINE Alu -22 290 1 352 326 49 21 chr4 91212188 91212332 -111116015 - MIR SINE MIR -96 166 19 2202 95 3 11 chr4 91213951 91214234 -111114113 - AluSx SINE Alu -31 281 1 256 267 0 33 chr4 91214244 91214334 -111114013 + CT-rich Low_complexity Low_complexity 3 89 0 482 248 17 17 chr4 91215852 91215969 -111112378 - MER94 DNA DNA 0 134 18 2222 129 7 0 chr4 91216734 91217044 -111111303 - AluSx SINE Alu 0 312 1 2065 114 0 17 chr4 91219450 91219767 -111108580 - AluSx SINE Alu 0 312 1 441 229 101 0 chr4 91220337 91220446 -111107901 - L2 LINE L2 -2 3311 3192 246 360 12 0 chr4 91220670 91220756 -111107591 - L2 LINE L2 0 3313 3227 341 253 0 0 chr4 91220852 91220927 -111107420 + L2 LINE L2 3197 3271 -1 197 349 0 0 chr4 91222104 91222167 -111106180 - L2 LINE L2 -23 3290 3228 257 179 60 0 chr4 91222275 91222342 -111106005 + T-rich Low_complexity Low_complexity 2 72 0 216 0 0 0 chr4 91225260 91225284 -111103063 + (TG)n Simple_repeat Simple_repeat 2 25 0 261 0 0 0 chr4 91226107 91226136 -111102211 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 205 216 0 0 chr4 91227106 91227143 -111101204 + (TATG)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chr4 91227235 91227255 -111101092 + (TTATA)n Simple_repeat Simple_repeat 5 24 0 22 35 0 0 chr4 91227758 91227787 -111100560 + AT_rich Low_complexity Low_complexity 1 29 0 339 352 101 13 chr4 91228201 91228428 -111099919 + MIR SINE MIR 13 259 -3 329 295 202 0 chr4 91229040 91229342 -111099005 - L1MC4 LINE L1 -62 7980 7618 1786 141 74 3 chr4 91229372 91229656 -111098691 - AluJb SINE Alu -8 304 1 226 228 18 0 chr4 91229847 91229904 -111098443 - L1MC5 LINE L1 -734 7227 7170 2488 54 0 7 chr4 91229962 91230260 -111098087 + AluY SINE Alu 1 296 -15 1111 205 98 46 chr4 91231803 91232130 -111096217 - MER2 DNA MER2_type 0 345 2 459 226 52 91 chr4 91232287 91232514 -111095833 - L1MC5 LINE L1 -2000 5808 5590 2088 87 7 68 chr4 91232514 91232823 -111095524 + AluSc SINE Alu 1 290 -19 459 226 52 91 chr4 91232823 91232847 -111095500 - L1MC5 LINE L1 -2218 5590 5567 325 281 104 8 chr4 91232870 91233055 -111095292 - L1MC5 LINE L1 -721 5430 5277 1890 128 46 49 chr4 91234097 91234442 -111093905 + MER2 DNA MER2_type 1 344 0 213 225 38 62 chr4 91235240 91235320 -111093027 + MIR3 SINE MIR 89 166 -42 2271 117 0 0 chr4 91235511 91235820 -111092527 + AluSg SINE Alu 1 309 -1 2343 84 3 3 chr4 91236080 91236378 -111091969 + AluSp SINE Alu 1 298 -15 22 0 0 0 chr4 91237005 91237027 -111091320 + AT_rich Low_complexity Low_complexity 1 22 0 2536 217 66 32 chr4 91237679 91238390 -111089957 + L1ME1 LINE L1 5427 6161 -5 1696 155 11 0 chr4 91238955 91239226 -111089121 + AluJo SINE Alu 21 294 -18 2278 143 3 20 chr4 91239246 91239589 -111088758 - MER1B DNA MER1_type 0 337 1 235 295 89 32 chr4 91239716 91239906 -111088441 + L1ME LINE L1 21 221 -5898 802 249 65 34 chr4 91239964 91240289 -111088058 + L1ME LINE L1 545 879 -5240 * 6643 139 33 26 chr4 91240284 91242261 -111086086 + L1MA4A LINE L1 4125 6110 -193 550 170 0 0 chr4 91242272 91242366 -111085981 + L1MA4A LINE L1 6189 6282 -21 233 216 20 0 chr4 91242421 91242472 -111085875 + L1ME LINE L1 4514 4565 -1564 213 288 0 17 chr4 91242484 91242519 -111085828 + GA-rich Low_complexity Low_complexity 1 36 -22 1928 150 3 7 chr4 91242519 91242813 -111085534 + AluJo SINE Alu 1 293 -19 213 288 0 17 chr4 91242813 91242836 -111085511 + GA-rich Low_complexity Low_complexity 36 58 0 643 265 151 57 chr4 91242868 91242908 -111085439 + L1ME LINE L1 4607 4642 -1511 1140 190 130 7 chr4 91242908 91243177 -111085170 + AluJo SINE Alu 1 302 0 643 265 151 57 chr4 91243177 91244162 -111084185 + L1ME LINE L1 4642 5706 -447 1341 99 0 0 chr4 91244258 91244430 -111083917 - AluSg/x SINE Alu -11 299 128 539 169 0 113 chr4 91245154 91245278 -111083069 - FLAM_A SINE Alu -32 110 1 376 183 14 0 chr4 91245650 91245721 -111082626 - MER58B DNA MER1_type -6 335 264 341 121 0 17 chr4 91246278 91246336 -111082011 + Alu SINE Alu 246 302 0 21 57 0 0 chr4 91247279 91247314 -111081033 + AT_rich Low_complexity Low_complexity 1 35 0 1595 157 107 4 chr4 91247551 91247831 -111080516 + AluJb SINE Alu 3 311 -1 252 0 0 0 chr4 91247867 91247895 -111080452 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 231 230 81 69 chr4 91249534 91249621 -111078726 + MIR SINE MIR 16 103 -105 222 312 96 70 chr4 91249913 91250214 -111078133 - L2 LINE L2 -657 2657 2349 2152 65 75 17 chr4 91250319 91250611 -111077736 + AluY SINE Alu 2 310 -1 2265 109 0 0 chr4 91250814 91251127 -111077220 + AluSx SINE Alu 1 313 0 819 136 0 8 chr4 91251128 91251237 -111077110 + AluSg/x SINE Alu 178 287 -25 289 0 0 0 chr4 91251237 91251269 -111077078 + (CAA)n Simple_repeat Simple_repeat 2 180 0 304 256 163 0 chr4 91251710 91251796 -111076551 + MARNA DNA Mariner 49 148 -438 * 496 313 78 14 chr4 91251757 91252122 -111076225 - MARNA DNA Mariner -111 475 78 2258 109 6 3 chr4 91253357 91253668 -111074679 - AluSq SINE Alu -1 312 1 24 32 0 0 chr4 91254572 91254603 -111073744 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr4 91254693 91254722 -111073625 + AT_rich Low_complexity Low_complexity 1 29 0 2360 43 0 7 chr4 91256720 91257002 -111071345 + AluY SINE Alu 1 280 -31 1710 164 11 11 chr4 91257103 91257404 -111070943 - AluJb SINE Alu 0 301 1 318 330 11 11 chr4 91257791 91257885 -111070462 + MIR SINE MIR 28 121 -141 192 224 90 0 chr4 91258092 91258159 -111070188 + MIR SINE MIR 84 156 -106 246 325 77 8 chr4 91258165 91258282 -111070065 - MIR SINE MIR -4 258 134 215 329 24 12 chr4 91258356 91258441 -111069906 + MER5A DNA MER1_type 104 189 0 2063 147 0 3 chr4 91260198 91260498 -111067849 + AluSx SINE Alu 1 299 -13 1663 168 7 29 chr4 91260756 91261065 -111067282 + AluJo SINE Alu 1 302 -10 287 197 49 0 chr4 91261964 91262025 -111066322 - MER91B DNA MER1_type -107 83 20 341 183 24 24 chr4 91262487 91262569 -111065778 + MIR SINE MIR 181 262 0 264 361 100 6 chr4 91262841 91263021 -111065326 + L2 LINE L2 1960 2156 -1158 259 155 0 121 chr4 91263165 91263223 -111065124 + MLT1E2 LTR MaLR 1 51 -603 1596 244 152 0 chr4 91263265 91263687 -111064660 + MLT1E2 LTR MaLR 141 626 0 448 355 44 44 chr4 91263732 91264073 -111064274 + L2 LINE L2 2394 2734 -580 23 33 0 0 chr4 91264073 91264103 -111064244 + AT_rich Low_complexity Low_complexity 1 30 0 270 309 24 24 chr4 91264409 91264532 -111063815 + L2 LINE L2 3121 3243 -70 197 174 0 22 chr4 91265404 91265450 -111062897 + (TA)n Simple_repeat Simple_repeat 2 46 0 2340 95 0 0 chr4 91265460 91265755 -111062592 - AluSq SINE Alu -18 295 1 270 339 77 23 chr4 91266125 91266255 -111062092 - L3 LINE CR1 -341 1236 1100 264 146 34 22 chr4 91266280 91266369 -111061978 - Charlie7 DNA MER1_type -71 2541 2452 429 293 159 62 chr4 91266431 91266902 -111061445 - L3 LINE CR1 -502 1075 559 368 282 51 47 chr4 91267001 91267235 -111061112 + L1M4 LINE L1 3944 4178 -1968 * 427 192 160 0 chr4 91267229 91267354 -111060993 + L1MD3 LINE L1 7773 7917 -78 612 188 125 21 chr4 91267427 91267571 -111060776 - MER20 DNA MER1_type -21 198 40 21 36 0 0 chr4 91267866 91267894 -111060453 + AT_rich Low_complexity Low_complexity 1 28 0 1943 118 43 4 chr4 91268167 91268469 -111059878 + AluSq SINE Alu 1 313 0 195 100 0 0 chr4 91268495 91268525 -111059822 + (CA)n Simple_repeat Simple_repeat 1 30 0 1603 175 0 0 chr4 91268549 91268800 -111059547 - AluJo SINE Alu -20 292 42 1746 133 12 0 chr4 91269031 91269280 -111059067 + AluSx SINE Alu 48 299 -13 1017 223 33 0 chr4 91269289 91269500 -111058847 - MLT1A1 LTR MaLR -4 361 144 1726 178 24 0 chr4 91269806 91270093 -111058254 + AluJb SINE Alu 1 294 -18 36 40 0 0 chr4 91270156 91270206 -111058141 + AT_rich Low_complexity Low_complexity 1 50 0 5074 149 6 20 chr4 91270210 91271067 -111057280 - L1PA16 LINE L1 0 6166 5322 793 168 69 17 chr4 91271067 91271240 -111057107 + Tigger3(Golem) DNA MER2_type 2762 2943 -86 6258 132 47 60 chr4 91271249 91272496 -111055851 - Tigger3b DNA MER2_type 0 1231 2 1088 192 35 118 chr4 91272676 91273014 -111055333 + MLT1A1 LTR MaLR 1 310 -55 1185 156 24 33 chr4 91273015 91273226 -111055121 + AluJo SINE Alu 7 215 -97 207 385 77 0 chr4 91273455 91273585 -111054762 - MIR3 SINE MIR -56 152 13 736 178 0 15 chr4 91274599 91274734 -111053613 - FLAM_C SINE Alu 0 133 1 372 271 240 0 chr4 91275040 91275169 -111053178 + MIR SINE MIR 29 188 -74 304 260 71 95 chr4 91275380 91275549 -111052798 + MIR SINE MIR 61 225 -37 2137 244 58 8 chr4 91275776 91276293 -111052054 + MLT1E LTR MaLR 51 593 0 591 101 8 78 chr4 91276404 91276446 -111051901 + L1ME1 LINE L1 2179 2222 -4174 783 183 78 104 chr4 91276446 91276572 -111051775 - MER58A DNA MER1_type -2196 224 96 288 0 0 0 chr4 91276572 91276604 -111051743 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 783 183 78 104 chr4 91276604 91276656 -111051691 - MER58A DNA MER1_type -2324 96 51 2111 132 0 3 chr4 91276656 91276960 -111051387 + AluSx SINE Alu 1 303 -9 783 183 78 104 chr4 91276960 91277010 -111051337 - MER58A DNA MER1_type -2369 51 1 591 101 8 78 chr4 91277010 91277096 -111051251 + L1ME1 LINE L1 2222 2298 -4098 1841 152 120 113 chr4 91277098 91277656 -111050691 + L1MD2 LINE L1 5796 6357 -2 403 183 22 66 chr4 91277651 91277788 -111050559 + L1ME1 LINE L1 2286 2416 -3980 * 1442 166 21 149 chr4 91277892 91278327 -111050020 + L1MB2 LINE L1 4930 5419 -727 696 190 0 29 chr4 91278327 91278464 -111049883 + FLAM_A SINE Alu 1 133 0 1442 166 21 149 chr4 91278464 91278484 -111049863 + L1MB2 LINE L1 5419 5315 -831 1950 148 26 3 chr4 91278484 91278788 -111049559 + AluJo SINE Alu 2 312 0 1442 166 21 149 chr4 91278788 91278849 -111049498 + L1MB2 LINE L1 5314 5381 -765 1111 161 5 57 chr4 91278850 91279061 -111049286 + MER2 DNA MER2_type 2 201 -144 290 288 0 0 chr4 91279095 91279161 -111049186 + MER2 DNA MER2_type 280 345 0 3949 161 64 5 chr4 91279162 91279908 -111048439 + L1MB2 LINE L1 5381 6170 -1 1874 223 30 45 chr4 91279899 91280562 -111047785 + L1ME1 LINE L1 2453 3105 -3110 * 1158 94 29 18 chr4 91280572 91280743 -111047604 + AluY SINE Alu 127 299 -12 297 199 114 36 chr4 91280746 91280912 -111047435 + L1ME1 LINE L1 3114 3292 -2923 1070 71 0 0 chr4 91280912 91281039 -111047308 - AluSq/x SINE Alu -186 127 1 1756 241 93 15 chr4 91281043 91281656 -111046691 + L1ME1 LINE L1 3285 3945 -2270 417 226 176 0 chr4 91281716 91281875 -111046472 + L1ME1 LINE L1 4196 4382 -1833 2170 92 34 7 chr4 91281875 91282170 -111046177 + AluY SINE Alu 1 303 -8 37 23 0 0 chr4 91282268 91282312 -111046035 + AT_rich Low_complexity Low_complexity 1 44 0 1191 207 95 2 chr4 91282316 91282691 -111045656 + L1ME1 LINE L1 5088 5497 -738 765 156 96 37 chr4 91282698 91282833 -111045514 + FAM SINE Alu 2 144 -41 2797 232 13 50 chr4 91282863 91283610 -111044737 + L1ME1 LINE L1 5496 6215 -20 1735 184 0 0 chr4 91283744 91284032 -111044315 + AluJo SINE Alu 1 288 -24 243 0 0 0 chr4 91284032 91284059 -111044288 + (CA)n Simple_repeat Simple_repeat 2 28 0 366 163 65 22 chr4 91284089 91284181 -111044166 - MIR SINE MIR -28 234 139 2189 57 14 14 chr4 91284324 91284626 -111043721 + AluY SINE Alu 1 302 0 353 328 36 21 chr4 91284836 91285028 -111043319 + L2 LINE L2 2897 3091 -181 1353 136 122 0 chr4 91285634 91285847 -111042500 + AluJb SINE Alu 1 239 -73 1477 165 0 16 chr4 91286467 91286722 -111041625 + AluJo SINE Alu 49 299 -13 1555 174 43 60 chr4 91286752 91287102 -111041245 + MER7A DNA MER2_type 1 342 -4 265 211 53 0 chr4 91287719 91287776 -111040571 + MIR SINE MIR 75 134 -128 475 157 0 9 chr4 91287777 91287861 -111040486 - MER58A DNA MER1_type -10 97 15 432 279 284 10 chr4 91287982 91288179 -111040168 + MIR SINE MIR 12 262 0 573 222 0 16 chr4 91288398 91288524 -111039823 + MIR SINE MIR 75 198 -64 405 0 0 0 chr4 91288540 91288585 -111039762 + (TA)n Simple_repeat Simple_repeat 2 46 0 524 267 77 15 chr4 91288600 91288795 -111039552 - MIR SINE MIR -49 213 7 2036 149 0 0 chr4 91288915 91289223 -111039124 - AluSx SINE Alu -4 308 1 416 204 97 0 chr4 91291045 91291148 -111037199 - MIR SINE MIR -97 165 53 21 0 0 0 chr4 91291298 91291319 -111037028 + AT_rich Low_complexity Low_complexity 1 21 0 1712 163 0 41 chr4 91291476 91291770 -111036577 - AluJb SINE Alu -30 282 1 725 141 30 44 chr4 91291775 91291910 -111036437 - FLAM_C SINE Alu 0 133 1 1115 156 151 0 chr4 91292120 91292332 -111036015 + L1MC1 LINE L1 6085 6328 -5 1972 84 77 7 chr4 91292367 91292641 -111035706 - AluSc SINE Alu -16 293 1 2313 93 0 7 chr4 91292860 91293161 -111035186 - AluSx SINE Alu -13 299 1 24 85 0 0 chr4 91294048 91294107 -111034240 + GC_rich Low_complexity Low_complexity 1 59 0 22 35 0 0 chr4 91294673 91294702 -111033645 + GC_rich Low_complexity Low_complexity 1 29 0 2344 86 3 0 chr4 91295240 91295542 -111032805 + AluSc SINE Alu 1 303 -6 2602 179 91 15 chr4 91296069 91296665 -111031682 + LTR48B LTR ERV1 1 641 -3 2404 99 0 0 chr4 91296696 91297008 -111031339 - AluSq SINE Alu -1 312 1 1454 167 67 19 chr4 91297066 91297245 -111031102 - AluJb SINE Alu 0 311 112 275 0 29 0 chr4 91297245 91297280 -111031067 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 1454 167 67 19 chr4 91297280 91297398 -111030949 - AluJb SINE Alu -199 112 1 384 231 104 22 chr4 91297554 91297688 -111030659 - L2 LINE L2 0 3313 3169 989 113 5 133 chr4 91298186 91298381 -111029966 - AluSg/x SINE Alu -15 297 128 21 71 0 0 chr4 91298583 91298625 -111029722 + AT_rich Low_complexity Low_complexity 1 42 0 26 74 0 0 chr4 91298815 91298869 -111029478 + AT_rich Low_complexity Low_complexity 1 54 0 224 232 36 36 chr4 91299593 91299705 -111028642 + L2 LINE L2 2279 2390 -924 439 44 0 132 chr4 91299915 91299955 -111028392 + L1MB3 LINE L1 6105 6128 -55 1846 162 0 7 chr4 91299955 91300258 -111028089 + AluJo SINE Alu 4 304 -8 439 44 0 132 chr4 91300258 91300308 -111028039 + L1MB3 LINE L1 6128 6183 0 869 142 26 26 chr4 91300318 91300473 -111027874 - MER5A DNA MER1_type -18 171 17 245 250 59 15 chr4 91300743 91300811 -111027536 + L2 LINE L2 3242 3312 -1 * 286 380 27 79 chr4 91300808 91301137 -111027210 + L2 LINE L2 2961 3272 0 1580 164 31 31 chr4 91301230 91301522 -111026825 + AluJo SINE Alu 11 302 -10 1247 183 88 7 chr4 91301605 91301878 -111026469 + AluSx SINE Alu 1 295 -17 247 275 75 12 chr4 91301885 91301965 -111026382 - MIR SINE MIR -75 133 49 276 281 156 0 chr4 91302072 91302208 -111026139 + MIR SINE MIR 34 189 -67 2446 52 13 16 chr4 91302406 91302711 -111025636 + AluY SINE Alu 1 304 -7 22 0 0 0 chr4 91303019 91303041 -111025306 + AT_rich Low_complexity Low_complexity 1 22 0 212 324 72 36 chr4 91303253 91303364 -111024983 - L2 LINE L2 -12 3260 3146 22 0 0 0 chr4 91303510 91303532 -111024815 + AT_rich Low_complexity Low_complexity 1 22 0 233 265 0 0 chr4 91304323 91304372 -111023975 - MARNA DNA Mariner -75 511 463 474 202 0 40 chr4 91304509 91304608 -111023739 + MER31A LTR ERV1 353 447 -38 272 202 24 48 chr4 91305056 91305140 -111023207 + GA-rich Low_complexity Low_complexity 4 85 0 21 57 0 0 chr4 91305360 91305395 -111022952 + AT_rich Low_complexity Low_complexity 1 35 0 2007 129 0 30 chr4 91306505 91306807 -111021540 - AluSx SINE Alu -19 293 1 512 210 38 70 chr4 91306886 91306941 -111021406 - MIR SINE MIR 0 262 207 1957 148 3 3 chr4 91306941 91307239 -111021108 - AluJb SINE Alu -14 298 1 512 210 38 70 chr4 91307239 91307340 -111021007 - MIR SINE MIR -55 207 111 418 299 7 0 chr4 91307467 91307611 -111020736 - L1ME LINE L1 -365 5756 5612 195 42 0 0 chr4 91307687 91307711 -111020636 + (TTG)n Simple_repeat Simple_repeat 3 26 0 666 157 0 0 chr4 91307718 91307820 -111020527 - AluJ/FLAM SINE Alu -210 102 1 2264 168 10 0 chr4 91309418 91309805 -111018542 - MER57A LTR ERV1 -5 398 8 512 113 12 0 chr4 91310055 91310135 -111018212 + MER51A LTR ERV1 470 550 -84 2137 74 10 42 chr4 91310204 91310516 -111017831 + AluSc SINE Alu 1 302 -7 667 88 0 0 chr4 91310822 91310913 -111017434 + AluS SINE Alu 1 91 -222 2013 136 0 17 chr4 91410939 91411234 -110917113 - AluSx SINE Alu -22 290 1 202 339 111 38 chr4 91411370 91411659 -110916688 + L2 LINE L2 2093 2402 -912 288 321 0 0 chr4 91411871 91411955 -110916392 - MER5A DNA MER1_type -49 140 57 1237 196 0 12 chr4 91412441 91412681 -110915666 + AluJo SINE Alu 76 312 0 3499 178 86 27 chr4 91412681 91413485 -110914862 + L1MB8 LINE L1 5319 6169 -9 440 282 23 15 chr4 91413937 91414068 -110914279 + L2 LINE L2 3182 3313 0 206 268 89 27 chr4 91414070 91414182 -110914165 - MIR SINE MIR -71 137 19 409 257 49 14 chr4 91414565 91414709 -110913638 - MIR SINE MIR 0 262 114 839 237 5 0 chr4 91415207 91415397 -110912950 + MER3 DNA MER1_type 1 191 -18 22 0 0 0 chr4 91416427 91416449 -110911898 + AT_rich Low_complexity Low_complexity 1 22 0 2263 110 0 10 chr4 91418160 91418470 -110909877 - AluSp SINE Alu -2 311 5 958 114 8 0 chr4 91418679 91418810 -110909537 - AluSp SINE Alu -181 132 1 184 167 0 48 chr4 91419207 91419249 -110909098 + MER5A DNA MER1_type 43 82 -107 297 0 0 0 chr4 91419574 91419607 -110908740 + (A)n Simple_repeat Simple_repeat 1 33 0 832 253 85 44 chr4 91421821 91422323 -110906024 - Charlie8 DNA MER1_type -2132 285 1 1685 65 0 0 chr4 91422768 91422968 -110905379 + AluY SINE Alu 100 299 -12 1132 265 88 46 chr4 91423000 91423784 -110904563 + L2 LINE L2 2503 3313 0 232 328 0 0 chr4 91424207 91424274 -110904073 + MLT1I LTR MaLR 94 160 -249 384 136 36 109 chr4 91424408 91424518 -110903829 + MLT1I LTR MaLR 305 406 -3 457 296 78 41 chr4 91424622 91424865 -110903482 + MIR SINE MIR 1 252 -10 2034 154 0 0 chr4 91424975 91425274 -110903073 + AluSx SINE Alu 1 299 -13 200 271 0 0 chr4 91425849 91425897 -110902450 + C-rich Low_complexity Low_complexity 3 50 0 365 230 171 0 chr4 91426040 91426192 -110902155 + (CTGGGG)n Simple_repeat Simple_repeat 1 178 0 241 257 158 0 chr4 91426178 91426330 -110902017 + (TTAGGG)n Simple_repeat Simple_repeat 1 176 0 * 442 159 0 0 chr4 91426884 91426953 -110901394 - AluS SINE Alu -243 70 2 213 39 0 0 chr4 91426999 91427025 -110901322 + (TGG)n Simple_repeat Simple_repeat 1 26 0 180 111 0 0 chr4 91427507 91427534 -110900813 + (TGAG)n Simple_repeat Simple_repeat 1 27 0 676 275 59 5 chr4 91428624 91428846 -110899501 - MIR SINE MIR 0 262 29 1791 130 29 14 chr4 91428989 91429290 -110899057 + AluSx SINE Alu 1 305 0 343 287 180 0 chr4 91429457 91429607 -110898740 - MIR SINE MIR -22 240 64 1877 219 13 21 chr4 91429617 91430083 -110898264 + L1M4 LINE L1 4453 4914 -1232 441 192 264 67 chr4 91431788 91431981 -110896366 + MIR SINE MIR 22 252 -10 926 209 34 38 chr4 91433026 91433261 -110895086 + MLT1A1 LTR MaLR 120 353 -12 243 261 171 0 chr4 91434273 91434361 -110893986 + L2 LINE L2 3160 3262 -10 194 171 49 0 chr4 91434536 91434577 -110893770 + MIR SINE MIR 204 246 -16 * 198 136 91 23 chr4 91434549 91434593 -110893754 + L2 LINE L2 3264 3310 -3 285 317 149 9 chr4 91435339 91435560 -110892787 - L2 LINE L2 -1020 2294 2043 684 224 66 58 chr4 91436524 91436783 -110891564 - L1ME1 LINE L1 -5 6161 5901 2018 233 143 43 chr4 91437070 91438058 -110890289 - HAL1 LINE L1 -598 1909 824 548 231 6 0 chr4 91438078 91438234 -110890113 + (CA)n Simple_repeat Simple_repeat 1 157 0 407 194 10 0 chr4 91438254 91438357 -110889990 + (CA)n Simple_repeat Simple_repeat 1 104 0 1697 189 88 53 chr4 91438409 91438896 -110889451 + MLT1D LTR MaLR 2 505 0 222 305 24 0 chr4 91439935 91440017 -110888330 + CT-rich Low_complexity Low_complexity 2 85 0 3152 158 37 93 chr4 91440089 91440854 -110887493 - L1MD1 LINE L1 0 6242 5521 326 204 176 0 chr4 91441167 91441275 -110887072 - MIR SINE MIR -24 238 112 265 286 0 14 chr4 91441674 91441744 -110886603 - L2 LINE L2 -1 3312 3244 24 67 0 0 chr4 91443021 91443066 -110885281 + AT_rich Low_complexity Low_complexity 1 45 0 655 261 64 23 chr4 91443258 91443476 -110884871 - MIR SINE MIR -27 235 9 318 26 0 0 chr4 91446234 91446273 -110882074 + (TG)n Simple_repeat Simple_repeat 1 39 0 2129 138 0 13 chr4 91446364 91446676 -110881671 + AluJb SINE Alu 1 308 -4 303 296 140 17 chr4 91446825 91447004 -110881343 - MIR SINE MIR -38 224 24 370 0 0 0 chr4 91447143 91447186 -110881161 + L1PA4 LINE L1 5883 5925 -230 25 0 0 0 chr4 91447891 91447916 -110880431 + AT_rich Low_complexity Low_complexity 1 25 0 253 350 28 21 chr4 91448189 91448332 -110880015 - MIR3 SINE MIR -45 163 20 247 131 98 16 chr4 91448820 91448881 -110879466 + MIR SINE MIR 182 247 -15 547 330 21 5 chr4 91449809 91450000 -110878347 - MIR SINE MIR -48 214 21 186 154 26 0 chr4 91451597 91451636 -110876711 - MER5A DNA MER1_type -87 102 63 1857 97 116 8 chr4 91451649 91451916 -110876431 + AluSg SINE Alu 1 296 -14 2448 83 0 10 chr4 91453863 91454175 -110874172 - AluSx SINE Alu -3 309 1 421 288 118 49 chr4 91455691 91456037 -110872310 + L2 LINE L2 2853 3236 -77 1832 193 30 22 chr4 91456037 91456399 -110871948 + MLT1A1 LTR MaLR 1 365 0 421 288 118 49 chr4 91456399 91456483 -110871864 + L2 LINE L2 3236 3313 0 1671 183 0 11 chr4 91456762 91457041 -110871306 - AluJo SINE Alu -36 276 1 2383 88 3 0 chr4 91457460 91457768 -110870579 - AluSq SINE Alu -4 309 1 260 65 65 0 chr4 91458239 91458285 -110870062 - L1MB7 LINE L1 -3 6181 6133 583 127 0 0 chr4 91458285 91458364 -110869983 - AluSp/q SINE Alu -16 297 219 6826 134 29 6 chr4 91458718 91460521 -110867826 - L1MA2 LINE L1 -4 6300 4459 638 39 0 0 chr4 91460720 91460797 -110867550 - L1PA5 LINE L1 0 6154 6078 637 206 53 66 chr4 91460839 91461082 -110867265 - MER20B DNA MER1_type 0 783 544 2248 217 80 32 chr4 91461141 91461829 -110866518 + L1M4 LINE L1 4372 5092 -1054 2557 62 3 0 chr4 91461830 91462137 -110866210 - AluY SINE Alu -3 308 1 4317 171 29 10 chr4 91462137 91463008 -110865339 - L1MA2 LINE L1 -2202 3944 3058 615 264 74 23 chr4 91465015 91465231 -110863116 - MIR SINE MIR -16 246 20 375 23 0 0 chr4 91465247 91465291 -110863056 + (CA)n Simple_repeat Simple_repeat 1 44 0 867 76 0 0 chr4 91465297 91465402 -110862945 - L1PA7 LINE L1 -6 6148 6044 23 0 0 0 chr4 91465710 91465733 -110862614 + AT_rich Low_complexity Low_complexity 1 23 0 547 286 144 19 chr4 91467063 91467525 -110860822 - L1MC4 LINE L1 -974 7068 6458 871 208 130 111 chr4 91467643 91468075 -110860272 - L1MC4a LINE L1 -1633 6175 5736 181 299 0 103 chr4 91468591 91468671 -110859676 + MIR SINE MIR 19 85 -123 690 224 89 34 chr4 91468671 91468850 -110859497 + MER5A DNA MER1_type 1 189 0 181 299 0 103 chr4 91468850 91468886 -110859461 + MIR SINE MIR 85 123 -85 2157 100 0 56 chr4 91470488 91470808 -110857539 - AluSx SINE Alu -10 302 1 289 75 0 0 chr4 91470833 91470873 -110857474 - MADE1 DNA Mariner -35 45 6 536 0 0 0 chr4 91471139 91471196 -110857151 + U6 snRNA snRNA 51 107 0 6230 94 10 7 chr4 91471201 91472096 -110856251 - L1P LINE L1 -781 5365 4468 1026 150 26 0 chr4 91472096 91472249 -110856098 + MER30 DNA MER1_type 74 230 0 2515 44 8 0 chr4 91472837 91473158 -110855189 + L1P2 LINE L1 5268 5591 -564 411 261 92 21 chr4 91473262 91473404 -110854943 - MER57B LTR ERV1 -282 152 1 2137 88 29 0 chr4 91473505 91473779 -110854568 - AluSc SINE Alu -27 282 1 2221 114 0 7 chr4 91473911 91474219 -110854128 - AluSq SINE Alu -7 306 1 240 336 60 21 chr4 91474219 91474454 -110853893 - L1MEd LINE L1 -5289 830 587 328 217 122 9 chr4 91476327 91476442 -110851905 - MIR SINE MIR -10 252 125 346 286 194 34 chr4 91476554 91476729 -110851618 + MIR SINE MIR 36 238 -24 2191 112 13 0 chr4 91476898 91477202 -110851145 - AluSx SINE Alu -4 308 1 359 251 90 54 chr4 91477595 91477762 -110850585 + MER5A DNA MER1_type 16 188 -1 332 249 60 52 chr4 91478568 91478817 -110849530 + L1MCa LINE L1 956 1206 -5220 486 117 26 0 chr4 91478817 91478894 -110849453 + AluS SINE Alu 231 309 -2 378 299 162 29 chr4 91478894 91479098 -110849249 + L1MCa LINE L1 1225 1455 -4973 203 0 37 0 chr4 91479217 91479244 -110849103 + (TC)n Simple_repeat Simple_repeat 2 29 0 2052 123 20 0 chr4 91479614 91479907 -110848440 + AluSx SINE Alu 1 299 -13 2593 68 0 3 chr4 91480146 91480457 -110847890 + AluSp SINE Alu 1 310 -3 2415 221 61 24 chr4 91480677 91481265 -110847082 + L1M4 LINE L1 3883 4503 -1643 1564 195 16 10 chr4 91481265 91481573 -110846774 + AluJo SINE Alu 1 310 -2 2415 221 61 24 chr4 91481573 91481684 -110846663 + L1M4 LINE L1 4503 4608 -1538 186 43 0 0 chr4 91483028 91483051 -110845296 + (TG)n Simple_repeat Simple_repeat 2 24 0 1185 187 38 4 chr4 91483858 91484093 -110844254 - MER58B DNA MER1_type -24 317 75 280 167 0 0 chr4 91484093 91484135 -110844212 + Alu SINE Alu 2 43 -256 663 71 0 0 chr4 91484916 91485000 -110843347 + MER30B DNA MER1_type 1 84 -106 180 0 0 0 chr4 91485375 91485395 -110842952 + (TTA)n Simple_repeat Simple_repeat 2 21 0 7263 66 25 0 chr4 91485395 91486595 -110841752 - L1PA8 LINE L1 -16 6156 4945 26 30 0 0 chr4 91487190 91487223 -110841124 + AT_rich Low_complexity Low_complexity 1 33 0 212 308 125 29 chr4 91488024 91488128 -110840219 + L2 LINE L2 3150 3263 -9 544 293 129 22 chr4 91488129 91488354 -110839993 - MIR SINE MIR -10 252 4 212 331 178 25 chr4 91488817 91488980 -110839367 + MIR3 SINE MIR 18 205 -3 599 134 0 0 chr4 91489138 91489220 -110839127 + AluJ/FLAM SINE Alu 2 83 -229 6587 134 23 32 chr4 91489612 91490693 -110837654 - MER11C LTR ERVK 0 1071 1 947 120 71 66 chr4 91491449 91491632 -110836715 - AluJo SINE Alu -16 296 113 818 194 0 54 chr4 91494183 91494369 -110833978 + MER5A DNA MER1_type 14 189 0 200 122 0 24 chr4 91494380 91494421 -110833926 + MIR3 SINE MIR 163 202 -6 777 264 65 16 chr4 91494755 91495001 -110833346 + MIR SINE MIR 5 262 0 239 241 50 38 chr4 91498181 91498268 -110830079 + MIR SINE MIR 59 116 -92 5777 108 58 1 chr4 91501095 91502174 -110826173 + L1PA11 LINE L1 5039 6173 -1 314 317 58 40 chr4 91502174 91502502 -110825845 + L1M4 LINE L1 4325 4658 -1488 241 233 68 14 chr4 91502701 91502774 -110825573 - MIR SINE MIR -121 141 65 477 307 0 9 chr4 91502865 91502979 -110825368 - MER81 DNA DNA 0 114 2 15803 151 31 5 chr4 91503185 91505684 -110822663 + L1M1 LINE L1 11 2573 -4992 2420 75 0 7 chr4 91505784 91506092 -110822255 - AluY SINE Alu -5 306 1 196 291 13 25 chr4 91507625 91507704 -110820643 + MIR SINE MIR 63 140 -122 1081 123 0 19 chr4 91508510 91508665 -110819682 + AluSg/x SINE Alu 131 282 -30 2425 84 0 0 chr4 91510279 91510575 -110817772 - AluY SINE Alu -15 296 1 246 32 0 0 chr4 91510713 91510744 -110817603 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 366 293 8 8 chr4 91513019 91513142 -110815205 - L2 LINE L2 0 3272 3150 251 214 18 0 chr4 91514027 91514083 -110814264 + MLT1E3 LTR MaLR 5 61 -593 2432 200 17 8 chr4 91514134 91514615 -110813732 + MLT1E3 LTR MaLR 140 624 0 394 287 164 5 chr4 91514639 91514834 -110813513 + MIR SINE MIR 17 242 -20 214 248 110 18 chr4 91515008 91515117 -110813230 - MIR SINE MIR -112 150 32 234 272 11 22 chr4 91515382 91515474 -110812873 + G-rich Low_complexity Low_complexity 6 96 0 247 220 70 30 chr4 91516323 91516423 -110811924 - MER5A DNA MER1_type -83 106 3 277 316 0 0 chr4 91517162 91517260 -110811087 + GA-rich Low_complexity Low_complexity 1 98 0 2277 112 0 0 chr4 91518106 91518402 -110809945 + AluSx SINE Alu 1 296 -16 1591 166 3 89 chr4 91518435 91518761 -110809586 - AluJb SINE Alu -14 298 1 287 296 266 24 chr4 91519315 91519653 -110808694 + L2 LINE L2 2309 2728 -586 225 224 179 0 chr4 91519964 91520031 -110808316 + L2 LINE L2 3190 3268 -4 239 261 46 0 chr4 91520224 91520289 -110808058 - L2 LINE L2 0 3313 3246 422 248 66 36 chr4 91520323 91520522 -110807825 - MIR SINE MIR -50 212 16 22 35 0 0 chr4 91520587 91520616 -110807731 + AT_rich Low_complexity Low_complexity 1 29 0 1234 157 130 8 chr4 91521120 91521382 -110806965 + L1MB8 LINE L1 5884 6177 -1 2252 120 0 19 chr4 91521536 91521852 -110806495 + AluSx SINE Alu 1 310 -2 415 247 45 125 chr4 91523096 91523305 -110805042 + L1ME3A LINE L1 5363 5587 -577 2968 156 50 13 chr4 91523305 91523842 -110804505 - MER89 LTR ERV1 -2 557 1 415 247 45 125 chr4 91523842 91524200 -110804147 + L1ME3A LINE L1 5587 5881 -283 706 224 31 15 chr4 91524290 91524486 -110803861 + MIR SINE MIR 64 262 0 1901 149 31 0 chr4 91524610 91524899 -110803448 + AluJo SINE Alu 1 298 -14 2097 176 13 13 chr4 91525626 91526002 -110802345 + MLT2D LTR ERVL 1 376 -38 808 246 18 14 chr4 91526747 91526967 -110801380 - MIR SINE MIR 0 262 42 417 122 0 0 chr4 91528354 91528428 -110799919 + (TCC)n Simple_repeat Simple_repeat 1 74 0 186 103 0 0 chr4 91528759 91528788 -110799559 + (CCG)n Simple_repeat Simple_repeat 2 30 0 683 303 181 31 chr4 91529351 91529704 -110798643 - MER115 DNA AcHobo -277 416 11 428 335 0 22 chr4 91529874 91530053 -110798294 + C-rich Low_complexity Low_complexity 2 176 0 180 263 0 0 chr4 91530074 91530150 -110798197 + CT-rich Low_complexity Low_complexity 1 76 0 1703 252 118 7 chr4 91530557 91531100 -110797247 - L1ME1 LINE L1 -6 6160 5558 228 171 0 0 chr4 91531100 91531141 -110797206 - MSTB1 LTR MaLR -4 428 388 397 204 0 34 chr4 91531318 91531392 -110796955 + L1ME3A LINE L1 6077 6149 -21 1401 116 98 0 chr4 91531392 91531607 -110796740 + MER46A DNA MER2_type 1 236 0 397 204 0 34 chr4 91531607 91531620 -110796727 + L1ME3A LINE L1 6149 6161 -9 195 338 0 0 chr4 91532584 91532652 -110795695 + MIR3 SINE MIR 109 176 -32 334 250 185 0 chr4 91533222 91533330 -110795017 - MIR SINE MIR -62 146 19 258 273 134 29 chr4 91534938 91535083 -110793264 - MIR SINE MIR -66 142 37 322 272 16 72 chr4 91535663 91535788 -110792559 - L2 LINE L2 -7 3265 3148 229 308 15 30 chr4 91538523 91538656 -110789691 + CT-rich Low_complexity Low_complexity 2 132 0 398 234 28 28 chr4 91540129 91540236 -110788111 + MIR3 SINE MIR 97 203 -5 498 211 103 8 chr4 91540635 91540792 -110787555 + MER58C DNA MER1_type 1 214 -1 958 192 57 0 chr4 91541080 91541273 -110787074 + MIR SINE MIR 43 246 -16 279 283 0 0 chr4 91541659 91541719 -110786628 + MER20B DNA MER1_type 98 157 -626 2071 173 40 3 chr4 91541750 91542102 -110786245 + MLT1A1 LTR MaLR 1 365 0 13033 175 64 34 chr4 91542229 91543758 -110784589 - L1MA4 LINE L1 -5 7714 6232 2518 73 3 0 chr4 91543758 91544059 -110784288 - AluY SINE Alu -9 302 1 13033 175 64 34 chr4 91544059 91544760 -110783587 - L1MA4 LINE L1 -1487 6232 5553 227 191 0 0 chr4 91544760 91544802 -110783545 - Alu SINE Alu -4 298 257 13033 175 64 34 chr4 91544802 91545965 -110782382 - L1MA4 LINE L1 -2166 5553 4426 2484 78 7 0 chr4 91545965 91546274 -110782073 + AluY SINE Alu 1 311 0 13033 175 64 34 chr4 91546274 91547374 -110780973 - L1MA4 LINE L1 -3293 4426 3027 890 167 0 0 chr4 91547374 91547506 -110780841 - AluSq/x SINE Alu -181 132 1 1891 233 31 22 chr4 91547506 91548308 -110780039 - L1MA4 LINE L1 -4519 2977 2267 754 316 55 40 chr4 91548779 91549181 -110779166 - L1MA4 LINE L1 -5873 1623 1216 837 224 83 8 chr4 91549183 91549424 -110778923 - L1MD3 LINE L1 -9 7986 7728 767 150 14 28 chr4 91549820 91550178 -110778169 + CT-rich Low_complexity Low_complexity 1 353 0 594 343 87 29 chr4 91552735 91553061 -110775286 + L3 LINE CR1 562 867 -710 982 181 27 41 chr4 91553061 91553282 -110775065 + MER20 DNA MER1_type 1 218 -1 594 343 87 29 chr4 91553282 91553690 -110774657 + L3 LINE CR1 867 1339 -238 21 71 0 0 chr4 91553763 91553805 -110774542 + AT_rich Low_complexity Low_complexity 1 42 0 265 271 14 0 chr4 91553927 91553997 -110774350 + L3 LINE CR1 1480 1550 -27 258 256 8 53 chr4 91555600 91555733 -110772614 + A-rich Low_complexity Low_complexity 2 128 0 2128 107 3 41 chr4 91557954 91558271 -110770076 + AluSx SINE Alu 1 305 -7 383 248 116 8 chr4 91558793 91558914 -110769433 + L2 LINE L2 3180 3313 0 1130 209 133 32 chr4 91559429 91559796 -110768551 + L1ME3A LINE L1 5429 5832 -332 21 36 0 0 chr4 91560881 91560909 -110767438 + AT_rich Low_complexity Low_complexity 1 28 0 841 200 20 0 chr4 91561786 91561936 -110766411 + FRAM SINE Alu 3 155 -21 2188 105 7 7 chr4 91562055 91562359 -110765988 + AluSx SINE Alu 1 304 -8 306 319 71 0 chr4 91563391 91563532 -110764815 + MIR SINE MIR 94 244 -18 180 0 0 0 chr4 91563666 91563686 -110764661 + (A)n Simple_repeat Simple_repeat 1 20 0 200 222 0 0 chr4 91564451 91564487 -110763860 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr4 91565190 91565211 -110763136 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 91566985 91567013 -110761334 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 91567085 91567106 -110761241 + AT_rich Low_complexity Low_complexity 1 21 0 185 304 0 22 chr4 91569086 91569132 -110759215 - MIR SINE MIR -188 74 30 182 212 30 45 chr4 91570469 91570535 -110757812 + L2 LINE L2 3018 3082 -190 438 204 130 65 chr4 91570924 91571263 -110757084 - HAL1 LINE L1 -101 2406 2046 2154 234 128 48 chr4 91571412 91572495 -110755852 - HAL1 LINE L1 -703 1804 635 488 293 88 10 chr4 91574503 91574708 -110753639 + MIR SINE MIR 9 229 -33 1561 92 5 14 chr4 91574826 91575033 -110753314 - AluSx SINE Alu -107 205 1 580 269 298 19 chr4 91576277 91577102 -110751245 - L2 LINE L2 -3 3310 2265 579 136 41 0 chr4 91577495 91577642 -110750705 + (TA)n Simple_repeat Simple_repeat 2 154 0 30 45 0 0 chr4 91577680 91577724 -110750623 + AT_rich Low_complexity Low_complexity 1 44 0 2536 146 14 14 chr4 91579387 91579813 -110748534 - MSTB LTR MaLR 0 426 1 487 267 58 17 chr4 91579926 91580093 -110748254 - MIR SINE MIR -62 146 12 266 365 43 0 chr4 91580383 91580498 -110747849 + L2 LINE L2 3149 3268 -4 194 248 124 29 chr4 91580880 91580985 -110747362 - L2 LINE L2 -234 3038 2924 23 0 0 0 chr4 91581365 91581388 -110746959 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr4 91581847 91581880 -110746467 + AT_rich Low_complexity Low_complexity 1 33 0 2203 101 3 10 chr4 91583352 91583649 -110744698 - AluSx SINE Alu -17 295 1 222 91 0 0 chr4 91583860 91583893 -110744454 + (TG)n Simple_repeat Simple_repeat 2 34 0 913 152 79 0 chr4 91583921 91584086 -110744261 - MER5B DNA MER1_type 0 178 1 775 237 88 12 chr4 91585112 91585361 -110742986 - LTR16A LTR ERVL -8 442 175 309 277 43 0 chr4 91586576 91586670 -110741677 + MIR3 SINE MIR 102 199 -9 893 208 0 7 chr4 91587389 91587543 -110740804 + FAM SINE Alu 15 167 -18 31 0 0 0 chr4 91587880 91587911 -110740436 + AT_rich Low_complexity Low_complexity 1 31 0 2829 174 29 6 chr4 91588310 91588834 -110739513 - MLT2B3 LTR ERVL -17 537 2 1067 159 62 10 chr4 91589041 91589249 -110739098 + MER20 DNA MER1_type 1 219 0 373 285 32 8 chr4 91590819 91590942 -110737405 + L2 LINE L2 3186 3311 -2 332 241 66 80 chr4 91592233 91592445 -110735902 - L1MC5 LINE L1 -31 7930 7722 1249 147 13 9 chr4 91593641 91593866 -110734481 + L1MB2 LINE L1 5930 6155 -16 358 78 0 0 chr4 91594008 91594059 -110734288 + L1PA7 LINE L1 6101 6151 -3 23 0 0 0 chr4 91594059 91594082 -110734265 + AT_rich Low_complexity Low_complexity 1 23 0 311 285 190 11 chr4 91594140 91594519 -110733828 + L1M4 LINE L1 3875 4321 -1825 292 242 131 0 chr4 91594519 91594618 -110733729 - MIR SINE MIR 0 262 151 2203 102 23 3 chr4 91594625 91594929 -110733418 - AluSg SINE Alu 0 310 1 2215 184 131 12 chr4 91594929 91595516 -110732831 - L1MB8 LINE L1 -38 6140 5484 28 0 0 0 chr4 91596366 91596394 -110731953 + AT_rich Low_complexity Low_complexity 1 28 0 1136 142 0 0 chr4 91596850 91597019 -110731328 - AluSg/x SINE Alu 0 310 142 2200 119 76 15 chr4 91597126 91597469 -110730878 - THE1B LTR MaLR 0 364 1 234 91 0 0 chr4 91597783 91597816 -110730531 + (TG)n Simple_repeat Simple_repeat 1 33 0 1616 173 3 50 chr4 91598056 91598379 -110729968 - AluSx SINE Alu -4 308 1 1565 183 37 17 chr4 91599622 91599922 -110728425 + AluJo SINE Alu 6 311 -1 23 0 0 0 chr4 91599926 91599949 -110728398 + AT_rich Low_complexity Low_complexity 1 23 0 393 331 22 0 chr4 91600087 91600223 -110728124 + MIR3 SINE MIR 7 145 -63 4035 82 9 21 chr4 91600321 91600783 -110727564 - MER41A LTR ERV1 0 554 99 2352 82 0 3 chr4 91600783 91601086 -110727261 + AluSg SINE Alu 1 302 -8 4035 82 9 21 chr4 91601086 91601183 -110727164 - MER41A LTR ERV1 -455 99 2 342 0 0 0 chr4 91602901 91602939 -110725408 + (TG)n Simple_repeat Simple_repeat 1 38 0 212 270 14 27 chr4 91604801 91604875 -110723472 - MIR SINE MIR -46 216 144 666 260 57 0 chr4 91606208 91606385 -110721962 + MIR SINE MIR 76 262 0 285 170 0 0 chr4 91606423 91606470 -110721877 - U6 snRNA snRNA -60 47 1 243 0 0 0 chr4 91607281 91607308 -110721039 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 274 281 175 19 chr4 91607317 91607477 -110720870 - MLT1L LTR MaLR 0 615 431 483 108 0 0 chr4 91607738 91607812 -110720535 + FLAM_C SINE Alu 70 143 0 2432 88 0 0 chr4 91608200 91608506 -110719841 + AluY SINE Alu 1 306 -5 249 318 103 29 chr4 91609975 91610805 -110717542 + L1ME LINE L1 4872 5776 -345 1340 269 154 47 chr4 91610825 91611726 -110716621 + L2 LINE L2 2203 3289 -24 2194 103 7 0 chr4 91611726 91612016 -110716331 - AluSx SINE Alu -20 292 1 1340 269 154 47 chr4 91612016 91612044 -110716303 + L2 LINE L2 3289 3313 0 3713 155 17 6 chr4 91612579 91613229 -110715118 - L1MB8 LINE L1 0 6178 5522 2293 104 3 0 chr4 91613259 91613557 -110714790 + AluSg SINE Alu 1 299 -11 617 198 0 0 chr4 91613568 91613684 -110714663 + MIR SINE MIR 147 262 0 230 272 141 41 chr4 91613740 91613893 -110714454 - MER5A DNA MER1_type -11 178 1 230 252 25 134 chr4 91614094 91614213 -110714134 + L2 LINE L2 3001 3106 -166 7105 223 79 49 chr4 91614408 91616825 -110711522 - L1ME1 LINE L1 -5 6161 3820 716 199 8 0 chr4 91616825 91616956 -110711391 - FLAM_A SINE Alu -1 132 1 7105 223 79 49 chr4 91616956 91617088 -110711259 - L1ME1 LINE L1 -2346 3820 3694 508 116 63 0 chr4 91617088 91617183 -110711164 - L1MA9 LINE L1 0 6312 6212 7105 223 79 49 chr4 91617183 91617864 -110710483 - L1ME1 LINE L1 -2472 3694 3035 1370 179 91 46 chr4 91617864 91618193 -110710154 - MER2 DNA MER2_type 0 344 1 7105 223 79 49 chr4 91618193 91618231 -110710116 - L1ME1 LINE L1 -3131 3035 3000 2337 110 0 3 chr4 91618231 91618541 -110709806 + AluSq SINE Alu 1 309 -4 7105 223 79 49 chr4 91618541 91619144 -110709203 - L1ME1 LINE L1 -3166 3000 2146 1597 152 64 0 chr4 91619503 91619788 -110708559 + AluSx SINE Alu 1 302 0 472 254 142 51 chr4 91619804 91620135 -110708212 - L1ME4a LINE L1 -11 6110 5750 288 295 18 0 chr4 91620143 91620255 -110708092 - L1ME4a LINE L1 -458 5663 5550 2170 121 10 7 chr4 91621786 91622083 -110706264 + AluSx SINE Alu 1 298 -14 225 310 0 0 chr4 91622497 91622568 -110705779 + L1ME1 LINE L1 523 593 -5937 3567 231 136 13 chr4 91622949 91624549 -110703798 + L1ME1 LINE L1 1016 2814 -3726 2560 157 52 2 chr4 91624553 91625032 -110703315 + L1PA8 LINE L1 1 503 -5372 25187 141 14 19 chr4 91625038 91627464 -110700883 + L1PA8 LINE L1 772 3209 -3278 1935 142 24 0 chr4 91627464 91627752 -110700595 + AluSx SINE Alu 1 295 -17 2238 89 0 3 chr4 91627754 91628056 -110700291 + AluY SINE Alu 1 301 0 25187 141 14 19 chr4 91628056 91631357 -110696990 + L1PA8 LINE L1 3210 6485 -2 2944 245 35 40 chr4 91631352 91632447 -110695900 + L1ME1 LINE L1 2801 3891 -2649 * 2061 117 3 41 chr4 91632447 91632763 -110695584 + AluSx SINE Alu 1 304 -8 2944 245 35 40 chr4 91632763 91632848 -110695499 + L1ME1 LINE L1 3891 3975 -2565 3351 244 46 40 chr4 91632878 91633074 -110695273 + L1ME1 LINE L1 4262 4455 -2085 1537 206 25 25 chr4 91633074 91633433 -110694914 - MLT1A1 LTR MaLR -2 363 5 3351 244 46 40 chr4 91633433 91634509 -110693838 + L1ME1 LINE L1 4455 5541 -999 2895 220 60 33 chr4 91634538 91635382 -110692965 + L1ME1 LINE L1 5677 6543 -17 654 143 0 0 chr4 91636118 91636216 -110692131 - Tigger7 DNA MER2_type -1 2486 2389 * 1501 176 23 0 chr4 91636214 91636475 -110691872 - Tigger7 DNA MER2_type -2220 267 1 423 90 0 0 chr4 91636586 91636653 -110691694 + Alu SINE Alu 245 311 -1 192 400 57 0 chr4 91637322 91637427 -110690920 - L2 LINE L2 -9 3263 3153 419 280 102 0 chr4 91637737 91637996 -110690351 - L1ME3 LINE L1 -208 5956 5663 874 198 21 10 chr4 91638008 91638200 -110690147 - MER3 DNA MER1_type 0 209 16 544 301 25 0 chr4 91638287 91638483 -110689864 - L1ME3 LINE L1 -510 5652 5452 380 233 167 56 chr4 91639431 91639611 -110688736 - MIR SINE MIR -6 256 57 488 232 87 36 chr4 91640831 91640969 -110687378 + MIR SINE MIR 100 244 -18 273 206 0 29 chr4 91641015 91641083 -110687264 - MLT1K LTR MaLR -2 586 521 753 226 23 0 chr4 91641122 91641299 -110687048 + MER82 DNA MER2_type 24 204 -449 700 136 24 8 chr4 91641592 91641717 -110686630 + MER82 DNA MER2_type 203 329 -324 2808 7 0 0 chr4 91642620 91642924 -110685423 + AluYa5 SINE Alu 1 304 -7 2170 117 3 7 chr4 91642964 91643272 -110685075 + AluSx SINE Alu 1 307 -5 204 225 0 0 chr4 91644349 91644389 -110683958 + (CA)n Simple_repeat Simple_repeat 2 41 0 304 335 118 65 chr4 91644800 91645353 -110682994 - L1M2 LINE L1 -5825 1024 443 22 0 0 0 chr4 91645625 91645647 -110682700 + GC_rich Low_complexity Low_complexity 1 22 0 2101 130 0 22 chr4 91646433 91646748 -110681599 + AluSx SINE Alu 1 308 -4 2404 64 3 13 chr4 91647033 91647345 -110681002 - AluY SINE Alu 0 311 3 2111 106 3 0 chr4 91647347 91647639 -110680708 - AluSx SINE Alu -19 293 1 261 267 207 67 chr4 91648031 91648166 -110680181 - L2 LINE L2 -2 3270 3117 1514 142 31 23 chr4 91648250 91648511 -110679836 + AluJo SINE Alu 14 276 -36 315 122 0 0 chr4 91648516 91648565 -110679782 + (CA)n Simple_repeat Simple_repeat 2 50 0 665 167 0 0 chr4 91648577 91648679 -110679668 - FLAM_A SINE Alu -16 126 25 2531 73 3 3 chr4 91650967 91651280 -110677067 + AluSp SINE Alu 1 313 0 457 329 34 31 chr4 91651322 91651647 -110676700 - L1ME4a LINE L1 -244 5877 5552 2030 158 14 16 chr4 91652332 91652698 -110675649 + MLT1A1 LTR MaLR 1 365 0 1123 209 115 59 chr4 91652785 91653158 -110675189 - MSTD LTR MaLR -2 394 1 435 153 133 0 chr4 91653302 91653400 -110674947 + MLT1C LTR MaLR 9 119 -348 * 1191 183 46 5 chr4 91653397 91653616 -110674731 + MLT1C LTR MaLR 240 467 0 246 274 26 44 chr4 91653668 91653781 -110674566 + 7SK RNA RNA 16 126 -67 2180 124 0 16 chr4 91654163 91654470 -110673877 - AluSc SINE Alu -7 302 1 3252 167 81 25 chr4 91654551 91655281 -110673066 - LTR48 LTR ERV1 -16 771 1 22 0 0 0 chr4 91655381 91655403 -110672944 + AT_rich Low_complexity Low_complexity 1 22 0 828 127 0 0 chr4 91655874 91655992 -110672355 + AluJb SINE Alu 1 118 -194 2103 101 10 27 chr4 91656020 91656336 -110672011 + AluSq SINE Alu 1 311 0 1914 120 41 14 chr4 91657089 91657381 -110670966 - AluSq SINE Alu -11 302 3 1193 202 49 22 chr4 91657524 91657956 -110670391 - MLT1D LTR MaLR -2 503 5 2042 117 3 21 chr4 91658189 91658373 -110669974 - AluSx SINE Alu 0 312 134 180 0 0 0 chr4 91658373 91658393 -110669954 + (TA)n Simple_repeat Simple_repeat 2 21 0 2042 117 3 21 chr4 91658393 91658525 -110669822 - AluSx SINE Alu -178 134 1 463 335 68 6 chr4 91658757 91658933 -110669414 + MIR SINE MIR 48 234 -28 2239 113 3 0 chr4 91659026 91659326 -110669021 - AluSq SINE Alu -12 301 1 230 234 16 31 chr4 91659579 91659643 -110668704 + L2 LINE L2 3251 3313 0 299 257 9 71 chr4 91659667 91659780 -110668567 + MIR3 SINE MIR 100 205 -3 195 184 0 0 chr4 91660008 91660046 -110668301 + (CATA)n Simple_repeat Simple_repeat 3 40 0 968 272 102 44 chr4 91661029 91661653 -110666694 - L2 LINE L2 -229 3043 2367 336 264 91 16 chr4 91661659 91661780 -110666567 + L2 LINE L2 3184 3313 0 3386 150 36 10 chr4 91662640 91663219 -110665128 + L1MB3 LINE L1 5588 6181 -2 2133 114 10 3 chr4 91664807 91665097 -110663250 - AluSc SINE Alu -17 292 1 1828 159 10 16 chr4 91665175 91665483 -110662864 - AluJo SINE Alu -5 307 2 1877 124 7 0 chr4 91665483 91665756 -110662591 - MLT1B LTR MaLR -115 275 1 371 230 81 106 chr4 91666342 91666391 -110661956 + MIR SINE MIR 101 150 -112 953 221 0 12 chr4 91666391 91666563 -110661784 + FAM SINE Alu 1 170 -5 1991 78 68 18 chr4 91666568 91666875 -110661472 + AluY SINE Alu 1 311 0 371 230 81 106 chr4 91666875 91666980 -110661367 + MIR SINE MIR 154 257 -5 290 290 140 0 chr4 91666988 91667088 -110661259 + L2 LINE L2 3199 3312 -1 748 214 7 7 chr4 91667595 91667735 -110660612 - Tigger3(Golem) DNA MER2_type -2888 141 2 198 311 54 0 chr4 91667743 91667817 -110660530 + L2 LINE L2 2898 2975 -339 1201 23 0 0 chr4 91668294 91668419 -110659928 + AluY SINE Alu 1 128 -183 2192 92 0 3 chr4 91668419 91668714 -110659633 + AluY SINE Alu 18 311 0 1358 81 0 6 chr4 91668823 91668995 -110659352 - AluSq SINE Alu -142 171 1 1385 153 0 58 chr4 91669128 91669403 -110658944 + AluSx SINE Alu 33 291 -21 6043 166 9 1 chr4 91670870 91671825 -110656522 + L1M1 LINE L1 17 979 -6586 2284 103 7 0 chr4 91672744 91673044 -110655303 + AluSx SINE Alu 1 302 -10 301 203 51 0 chr4 91673096 91673155 -110655192 + MER3 DNA MER1_type 1 62 -147 427 202 53 0 chr4 91673269 91673363 -110654984 - Charlie5 DNA MER1_type -2503 109 11 1073 122 14 0 chr4 91673709 91673857 -110654490 - AluSc SINE Alu -159 150 1 487 68 0 0 chr4 91673892 91673951 -110654396 + AluSg/x SINE Alu 189 247 -62 2132 120 3 3 chr4 91674089 91674388 -110653959 + AluSc SINE Alu 1 299 -10 2425 82 10 0 chr4 91675029 91675335 -110653012 + AluSc SINE Alu 1 309 0 21 95 0 0 chr4 91675724 91675787 -110652560 + AT_rich Low_complexity Low_complexity 1 63 0 193 167 0 0 chr4 91675787 91675817 -110652530 - L2 LINE L2 -19 3294 3265 1545 166 72 4 chr4 91675975 91676253 -110652094 + AluJo SINE Alu 1 297 -15 2215 105 0 0 chr4 91676255 91676549 -110651798 + AluSg SINE Alu 1 294 -16 27 49 0 0 chr4 91676607 91676648 -110651699 + AT_rich Low_complexity Low_complexity 1 41 0 2048 107 23 20 chr4 91676790 91677089 -110651258 + AluSx SINE Alu 1 300 -12 738 162 0 0 chr4 91677630 91677735 -110650612 - AluSg/x SINE Alu -11 299 195 666 182 145 13 chr4 91679117 91679276 -110649071 + MLT1A2 LTR MaLR 195 374 0 3794 200 70 19 chr4 91679287 91680147 -110648200 + L1ME1 LINE L1 5258 6161 -5 252 0 0 0 chr4 91680397 91680425 -110647922 + (TG)n Simple_repeat Simple_repeat 1 28 0 26 50 0 0 chr4 91680866 91680906 -110647441 + AT_rich Low_complexity Low_complexity 1 40 0 2309 88 0 0 chr4 91681021 91681315 -110647032 - AluY SINE Alu -17 294 1 219 140 0 0 chr4 91681460 91681510 -110646837 + (T)n Simple_repeat Simple_repeat 1 50 0 1029 127 0 13 chr4 91681625 91681775 -110646572 - AluSq/x SINE Alu -163 149 2 69 0 0 0 chr4 91681783 91681852 -110646495 + AT_rich Low_complexity Low_complexity 1 69 0 591 144 52 0 chr4 91681860 91681957 -110646390 - FLAM_C SINE Alu -40 103 2 287 329 13 0 chr4 91682275 91682351 -110645996 + LTR67 LTR ERVL 114 190 -367 261 254 8 66 chr4 91682579 91682701 -110645646 + LTR33A LTR ERVL 406 520 -3 199 250 147 0 chr4 91682704 91682772 -110645575 + MIR SINE MIR 159 236 -26 2597 166 18 36 chr4 91682785 91683291 -110645056 - MLT2B1 LTR ERVL -23 497 1 2064 163 44 31 chr4 91683505 91684048 -110644299 - MLT2A2 LTR ERVL 0 554 1 1489 75 156 0 chr4 91684858 91685057 -110643290 - MER30 DNA MER1_type 0 230 1 2264 104 10 0 chr4 91685793 91686100 -110642247 + AluSp SINE Alu 1 310 -3 278 270 48 32 chr4 91686342 91686468 -110641879 - MLT1J LTR MaLR -377 134 7 1109 94 135 0 chr4 91686699 91686848 -110641499 + MER107 DNA MER1_type 2 178 -19 327 49 0 0 chr4 91686848 91686889 -110641458 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1109 94 135 0 chr4 91686889 91686909 -110641438 + MER107 DNA MER1_type 178 194 -3 239 296 30 45 chr4 91687190 91687322 -110641025 - L2 LINE L2 0 3272 3143 246 264 0 0 chr4 91688676 91688729 -110639618 - L2 LINE L2 -16 3297 3245 2216 111 0 7 chr4 91688741 91689038 -110639309 - AluSg SINE Alu -15 295 1 587 240 118 16 chr4 91689054 91689300 -110639047 + L1ME3A LINE L1 2207 2477 -3669 434 245 41 31 chr4 91689398 91689594 -110638753 + L1ME3A LINE L1 4396 4593 -1553 1107 259 56 7 chr4 91689608 91690182 -110638165 + L1ME3A LINE L1 4943 5543 -641 871 231 98 58 chr4 91690182 91690558 -110637789 + LTR52 LTR ERVL 9 399 -22 546 219 60 65 chr4 91690585 91690725 -110637622 + L1ME3A LINE L1 5621 5761 -409 2427 74 0 0 chr4 91690725 91691021 -110637326 + AluY SINE Alu 1 296 -15 546 219 60 65 chr4 91691021 91691081 -110637266 + L1ME3A LINE L1 5761 5820 -350 * 604 209 15 8 chr4 91691071 91691205 -110637142 + L1ME3A LINE L1 6036 6170 0 613 247 98 73 chr4 91691374 91691649 -110636698 - L2 LINE L2 -9 3304 3023 932 220 191 85 chr4 91692192 91692688 -110635659 + MLT1H LTR MaLR 1 549 0 6454 189 84 48 chr4 91693873 91693937 -110634410 - MLT1A1-int LTR MaLR -186 1549 1489 2197 122 0 7 chr4 91693937 91694241 -110634106 + AluSx SINE Alu 1 302 -10 6454 189 84 48 chr4 91694241 91695623 -110632724 - MLT1A1-int LTR MaLR -246 1489 51 1186 169 50 55 chr4 91695650 91695964 -110632383 - MLT1A1 LTR MaLR -3 362 1 1061 286 81 29 chr4 91695968 91696562 -110631785 - L1M4 LINE L1 -940 5206 4582 720 206 110 53 chr4 91696571 91696799 -110631548 + Charlie1 DNA MER1_type 1 241 -2520 579 131 84 0 chr4 91696787 91696894 -110631453 + Charlie1 DNA MER1_type 2640 2755 -6 * 599 220 128 7 chr4 91697069 91697210 -110631137 + MIR SINE MIR 1 158 -104 1501 171 9 54 chr4 91697226 91697542 -110630805 - AluJb SINE Alu -10 302 1 542 339 85 21 chr4 91697573 91697998 -110630349 - L1MC/D LINE L1 -2006 5802 5351 21 0 0 0 chr4 91698696 91698717 -110629630 + AT_rich Low_complexity Low_complexity 1 21 0 1818 156 0 23 chr4 91698863 91699165 -110629182 + AluSx SINE Alu 16 310 -2 264 300 12 14 chr4 91699827 91699989 -110628358 - MIR SINE MIR -3 259 63 361 129 0 0 chr4 91699996 91700058 -110628289 - Alu SINE Alu 0 301 240 188 371 22 0 chr4 91700645 91700734 -110627613 + MIR SINE MIR 34 124 -84 3492 163 15 48 chr4 91700770 91700897 -110627450 - L1MB8 LINE L1 -5 6173 6043 1684 121 14 57 chr4 91700897 91701178 -110627169 - AluJo SINE Alu -10 302 34 3492 163 15 48 chr4 91701178 91701723 -110626624 - L1MB8 LINE L1 -135 6043 5523 2160 119 7 0 chr4 91701772 91702074 -110626273 + AluSx SINE Alu 1 304 -8 386 254 118 41 chr4 91702129 91702349 -110625998 - L1MEc LINE L1 -4431 2707 2471 1411 228 69 18 chr4 91702533 91702867 -110625480 - L1MEc LINE L1 -6498 361 11 2147 92 3 36 chr4 91703178 91703483 -110624864 + AluJb SINE Alu 1 295 -17 623 251 146 10 chr4 91703601 91703800 -110624547 + MIR SINE MIR 6 231 -31 23 0 0 0 chr4 91705474 91705497 -110622850 + AT_rich Low_complexity Low_complexity 1 23 0 288 188 14 29 chr4 91706211 91706280 -110622067 - L1ME4a LINE L1 -68 6053 5986 480 228 10 127 chr4 91706554 91706618 -110621729 - MER5B DNA MER1_type 0 178 108 443 177 186 9 chr4 91706618 91706731 -110621616 + FLAM_A SINE Alu 1 133 0 480 228 10 127 chr4 91706731 91706863 -110621484 - MER5B DNA MER1_type -70 108 5 644 227 135 22 chr4 91708127 91708356 -110619991 + MIR SINE MIR 5 259 -3 447 281 59 25 chr4 91709556 91709759 -110618588 + MIR SINE MIR 50 261 -1 184 290 73 73 chr4 91709865 91709989 -110618358 + MER5A DNA MER1_type 62 185 -4 1913 148 20 7 chr4 91710141 91710444 -110617903 - AluJb SINE Alu -5 307 1 327 254 48 40 chr4 91710509 91710635 -110617712 + L1M LINE L1 5298 5424 -2384 227 77 0 26 chr4 91710810 91710849 -110617498 + (TTTC)n Simple_repeat Simple_repeat 1 38 0 2048 137 0 28 chr4 91710851 91711172 -110617175 - AluJo SINE Alu 0 312 1 14502 143 36 26 chr4 91712472 91713879 -110614468 + L1MA3 LINE L1 1405 2797 -4927 1790 198 3 0 chr4 91713879 91714187 -110614160 + AluJb SINE Alu 1 309 -3 14502 143 36 26 chr4 91714187 91714719 -110613628 + L1MA3 LINE L1 2797 3322 -4402 2007 72 7 0 chr4 91714719 91714995 -110613352 + L1PA13 LINE L1 5883 6160 -3 14502 143 36 26 chr4 91714995 91717010 -110611337 + L1MA3 LINE L1 3322 5315 -2409 2305 84 7 7 chr4 91717010 91717308 -110611039 + AluSq SINE Alu 1 298 -15 14502 143 36 26 chr4 91717308 91719594 -110608753 + L1MA3 LINE L1 5315 7716 -8 21 0 0 0 chr4 91719640 91719661 -110608686 + AT_rich Low_complexity Low_complexity 1 21 0 3917 191 26 29 chr4 91719818 91720708 -110607639 + L1MA9 LINE L1 4588 5479 -833 2459 95 0 0 chr4 91720708 91721014 -110607333 + AluSx SINE Alu 1 306 -6 3917 191 26 29 chr4 91721014 91721732 -110606615 + L1MA9 LINE L1 5479 6191 -121 1054 23 78 0 chr4 91721732 91721860 -110606487 - MER85 DNA T2_type 0 139 2 3917 191 26 29 chr4 91721860 91721944 -110606403 + L1MA9 LINE L1 6191 6274 -38 2433 59 0 16 chr4 91721982 91722286 -110606061 - AluY SINE Alu -12 299 1 4439 92 1 29 chr4 91722310 91722866 -110605481 - L1PB2 LINE L1 -2 6149 5612 2333 89 0 43 chr4 91722866 91723192 -110605155 - AluSp SINE Alu 0 313 2 4439 92 1 29 chr4 91723192 91723297 -110605050 - L1PB2 LINE L1 -539 5612 5506 212 291 0 0 chr4 91723404 91723459 -110604888 + (TA)n Simple_repeat Simple_repeat 1 55 0 232 288 0 0 chr4 91723825 91723884 -110604463 + GA-rich Low_complexity Low_complexity 5 63 0 534 195 0 26 chr4 91724050 91724163 -110604184 + FLAM_C SINE Alu 28 137 -6 188 395 58 9 chr4 91724163 91724386 -110603961 - L2 LINE L2 -509 2805 2572 180 241 17 52 chr4 91724438 91724496 -110603851 + L2 LINE L2 3210 3265 -7 249 128 0 43 chr4 91725093 91725140 -110603207 + Alu SINE Alu 122 166 -137 270 102 0 61 chr4 91726208 91726257 -110602090 + L1PA16 LINE L1 5735 5780 -386 1263 161 0 0 chr4 91726257 91726443 -110601904 + AluSx SINE Alu 1 186 -126 11423 17 1 0 chr4 91726515 91728593 -110599754 - L1PA3 LINE L1 -3 6152 4073 853 145 0 0 chr4 91728986 91729117 -110599230 + AluSx SINE Alu 180 310 0 1835 174 42 6 chr4 91729117 91729474 -110598873 + L1PA16 LINE L1 5777 6146 -20 4064 165 29 57 chr4 91729579 91729848 -110598499 + L1MB8 LINE L1 4909 5184 -994 2304 90 0 3 chr4 91729848 91730149 -110598198 + AluY SINE Alu 1 300 -11 4064 165 29 57 chr4 91730149 91730853 -110597494 + L1MB8 LINE L1 5184 5852 -326 1911 172 0 0 chr4 91730853 91731155 -110597192 + AluSx SINE Alu 1 302 -10 4064 165 29 57 chr4 91731155 91731469 -110596878 + L1MB8 LINE L1 5852 6173 -5 946 138 0 14 chr4 91732129 91732274 -110596073 + AluJb SINE Alu 133 275 -37 315 122 0 0 chr4 91732276 91732325 -110596022 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 417 304 170 16 chr4 91732389 91732636 -110595711 + MLT1I LTR MaLR 28 312 -97 229 257 0 0 chr4 91732648 91732718 -110595629 - MER116 DNA Mariner -10 70 1 343 200 56 0 chr4 91732718 91732808 -110595539 + MLT1I LTR MaLR 313 407 -2 1321 223 44 20 chr4 91733085 91733381 -110594966 + AluJo SINE Alu 3 305 -7 23 33 0 0 chr4 91733498 91733528 -110594819 + AT_rich Low_complexity Low_complexity 1 30 0 532 71 0 47 chr4 91733533 91733618 -110594729 - L1MA1 LINE L1 0 6302 6222 470 160 21 11 chr4 91733659 91733753 -110594594 + MLT1B LTR MaLR 1 95 -295 35579 89 13 8 chr4 91733756 91739856 -110588491 - L1PA6 LINE L1 -11 6143 11 1514 128 46 36 chr4 91739863 91739966 -110588381 + MLT1B LTR MaLR 80 180 -210 2486 66 7 0 chr4 91739966 91740269 -110588078 + AluY SINE Alu 1 305 -6 1514 128 46 36 chr4 91740269 91740471 -110587876 + MLT1B LTR MaLR 180 388 -2 1904 206 102 52 chr4 91741200 91741896 -110586451 + L1MC4 LINE L1 7295 8025 -17 463 350 46 89 chr4 91742157 91742329 -110586018 - L2 LINE L2 -3 3269 3091 180 0 0 0 chr4 91742329 91742349 -110585998 + (TGAG)n Simple_repeat Simple_repeat 2 21 0 463 350 46 89 chr4 91742349 91742744 -110585603 - L2 LINE L2 -181 3091 2723 484 212 45 81 chr4 91742956 91743154 -110585193 + MLT1A2 LTR MaLR 1 191 -183 222 309 125 0 chr4 91743179 91743331 -110585016 - L2 LINE L2 -814 2500 2330 840 164 91 0 chr4 91744385 91744550 -110583797 - MER20 DNA MER1_type 0 219 40 244 328 140 30 chr4 91744661 91745167 -110583180 + L2 LINE L2 1772 2333 -981 229 325 26 0 chr4 91745330 91745407 -110582940 + MIR SINE MIR 163 241 -21 2199 120 0 3 chr4 91745577 91745869 -110582478 - AluSx SINE Alu -19 293 3 776 280 43 13 chr4 91746016 91746248 -110582099 + MIR SINE MIR 23 261 -1 2142 135 0 0 chr4 91746410 91746706 -110581641 - AluSx SINE Alu -16 296 1 204 224 0 0 chr4 91747797 91747846 -110580501 + GA-rich Low_complexity Low_complexity 2 50 0 2418 91 0 3 chr4 91747900 91748208 -110580139 + AluSx SINE Alu 1 307 -5 319 262 78 0 chr4 91748507 91748610 -110579737 - MIR SINE MIR 0 262 152 321 277 106 7 chr4 91751439 91751580 -110576767 + L1MEd LINE L1 1 155 -5964 306 312 48 65 chr4 91751598 91751784 -110576563 + L1MEd LINE L1 208 390 -5729 666 267 111 35 chr4 91751941 91752518 -110575829 + L1MEd LINE L1 531 1151 -4968 2035 155 0 3 chr4 91752604 91752914 -110575433 + AluJb SINE Alu 1 309 -3 1643 164 18 18 chr4 91752922 91753208 -110575139 + AluJo SINE Alu 1 286 -26 316 265 73 15 chr4 91753292 91753428 -110574919 + L1MB3 LINE L1 4060 4203 -1943 1361 112 0 0 chr4 91753503 91753682 -110574665 + AluSx SINE Alu 1 179 -133 1585 313 73 5 chr4 91753711 91754092 -110574255 + MER115 DNA AcHobo 70 503 -190 2331 108 0 19 chr4 91754092 91754406 -110573941 - AluSg SINE Alu -1 309 2 1585 313 73 5 chr4 91754406 91754589 -110573758 + MER115 DNA AcHobo 503 672 -21 878 205 35 30 chr4 91754626 91754826 -110573521 + MER58A DNA MER1_type 24 224 0 438 214 50 0 chr4 91754912 91755052 -110573295 + L1MB3 LINE L1 5134 5280 -866 825 302 125 16 chr4 91855321 91855745 -110472602 - MLT1J LTR MaLR -41 470 1 252 292 0 0 chr4 91856118 91856190 -110472157 + (TAG)n Simple_repeat Simple_repeat 1 72 0 1899 155 0 3 chr4 91856214 91856505 -110471842 + AluJb SINE Alu 3 292 -20 2216 167 42 24 chr4 91856515 91856970 -110471377 + L1MB3 LINE L1 5440 5902 -281 666 291 62 98 chr4 91857171 91857302 -110471045 - L2 LINE L2 0 3313 3179 2083 113 3 29 chr4 91857302 91857612 -110470735 + AluSx SINE Alu 1 302 -10 2333 94 17 0 chr4 91857616 91857915 -110470432 + AluSx SINE Alu 1 304 -8 666 291 62 98 chr4 91857915 91858010 -110470337 - L2 LINE L2 -137 3176 3079 757 152 134 101 chr4 91858010 91858227 -110470120 - MER58A DNA MER1_type 0 224 1 666 291 62 98 chr4 91858227 91858461 -110469886 - L2 LINE L2 -234 3079 2864 1094 99 0 0 chr4 91859278 91859439 -110468908 + L1P4 LINE L1 5600 5760 -401 22 0 0 0 chr4 91859447 91859469 -110468878 + AT_rich Low_complexity Low_complexity 1 22 0 2172 94 43 3 chr4 91859469 91859768 -110468579 - AluY SINE Alu 0 311 1 243 0 0 0 chr4 91859963 91859990 -110468357 + (A)n Simple_repeat Simple_repeat 1 27 0 7973 101 5 0 chr4 91859990 91861224 -110467123 + L1P LINE L1 2310 3549 -2597 695 99 0 10 chr4 91861327 91861428 -110466919 - AluSq/x SINE Alu -175 137 38 432 0 0 0 chr4 91861621 91861669 -110466678 + (TG)n Simple_repeat Simple_repeat 1 48 0 343 265 176 27 chr4 91861970 91862138 -110466209 - MIR3 SINE MIR -56 152 4 498 278 94 28 chr4 91862530 91862710 -110465637 + MIR3 SINE MIR 16 207 -1 28 29 0 0 chr4 91862796 91862831 -110465516 + AT_rich Low_complexity Low_complexity 1 35 0 1826 179 6 13 chr4 91863031 91863344 -110465003 - AluJo SINE Alu -1 311 1 601 273 74 51 chr4 91863406 91863423 -110464924 + MIR SINE MIR 1 16 -246 1352 113 9 27 chr4 91863423 91863645 -110464702 - MER20 DNA MER1_type -1 218 1 601 273 74 51 chr4 91863645 91863788 -110464559 + MIR SINE MIR 16 172 -90 2175 174 95 48 chr4 91863788 91864244 -110464103 + MLT2B1 LTR ERVL 1 483 -37 617 76 11 0 chr4 91864244 91864336 -110464011 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 2175 174 95 48 chr4 91864336 91864374 -110463973 + MLT2B1 LTR ERVL 483 518 -2 601 273 74 51 chr4 91864374 91864468 -110463879 + MIR SINE MIR 172 262 0 3258 160 37 93 chr4 91865028 91865702 -110462645 - MER21A LTR ERV1 -7 924 301 1361 205 64 14 chr4 91865702 91865985 -110462362 - AluJo SINE Alu -15 297 1 3258 160 37 93 chr4 91865985 91866118 -110462229 - MER21A LTR ERV1 -630 301 162 1655 95 0 0 chr4 91866264 91866505 -110461842 + L1PA13 LINE L1 5923 6163 0 430 271 78 8 chr4 91866842 91866971 -110461376 + L2 LINE L2 3134 3271 -1 37 23 0 0 chr4 91867141 91867185 -110461162 + AT_rich Low_complexity Low_complexity 1 44 0 2434 92 0 0 chr4 91867202 91867508 -110460839 - AluSx SINE Alu -6 306 1 1622 153 11 36 chr4 91868460 91868741 -110459606 + AluJb SINE Alu 5 278 -34 818 159 6 16 chr4 91868742 91868924 -110459423 + GA-rich Low_complexity Low_complexity 1 180 0 829 129 0 43 chr4 91868941 91869127 -110459220 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 1284 16 11 27 chr4 91869138 91869321 -110459026 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 192 297 169 25 chr4 91869602 91869720 -110458627 - L2 LINE L2 -220 3052 2918 213 319 17 35 chr4 91869846 91869962 -110458385 - L2 LINE L2 -557 2757 2644 445 252 171 36 chr4 91870004 91870226 -110458121 + Charlie8 DNA MER1_type 35 286 -2131 680 208 6 25 chr4 91870838 91870997 -110457350 + MER106B DNA MER1_type 904 1059 0 7620 26 0 5 chr4 91871872 91872828 -110455519 - L1PA3 LINE L1 -3 6152 5197 562 40 0 0 chr4 91872828 91872904 -110455443 + L1P LINE L1 4870 4945 -1201 429 111 0 0 chr4 91873004 91873067 -110455280 - AluJ/FLAM SINE Alu -245 67 5 612 149 17 114 chr4 91873069 91873244 -110455103 + L1MB3 LINE L1 6026 6183 0 188 319 112 0 chr4 91873276 91873392 -110454955 - MIR SINE MIR -14 248 120 738 190 0 0 chr4 91873394 91873515 -110454832 + AluJb SINE Alu 3 123 -189 226 305 0 0 chr4 91873549 91873608 -110454739 - MIR SINE MIR -73 135 77 2002 144 7 3 chr4 91873643 91873942 -110454405 + AluSq SINE Alu 1 300 -13 543 266 203 0 chr4 91873997 91874155 -110454192 - MIR SINE MIR -38 224 35 1826 159 93 0 chr4 91874760 91875094 -110453253 - MER47A DNA MER2_type -1 365 1 2346 101 0 3 chr4 91875159 91875467 -110452880 - AluSx SINE Alu -5 307 1 1021 259 34 86 chr4 91875578 91876124 -110452223 - L2 LINE L2 -41 3272 2754 2038 125 16 13 chr4 91876333 91876644 -110451703 + AluSx SINE Alu 1 312 0 27 0 0 0 chr4 91877046 91877073 -110451274 + AT_rich Low_complexity Low_complexity 1 27 0 758 146 77 118 chr4 91877726 91877946 -110450401 - MER20 DNA MER1_type 0 219 9 12154 113 12 12 chr4 91878676 91881299 -110447048 - L1P3 LINE L1 -3828 2633 1 622 276 20 15 chr4 91881346 91881549 -110446798 - MLT1I LTR MaLR -196 213 10 475 295 0 64 chr4 91881747 91881903 -110446444 + MER5B DNA MER1_type 2 147 -31 1876 166 3 43 chr4 91883573 91883898 -110444449 + AluJb SINE Alu 1 312 0 2255 100 0 0 chr4 91883906 91884195 -110444152 + AluSx SINE Alu 21 309 -3 196 276 26 40 chr4 91884674 91884750 -110443597 - L2 LINE L2 -8 3264 3190 354 344 90 0 chr4 91884843 91884965 -110443382 + LTR16C LTR ERVL 71 203 -288 204 125 0 0 chr4 91885508 91885540 -110442807 + (CAT)n Simple_repeat Simple_repeat 1 32 0 2283 86 0 23 chr4 91887392 91887696 -110440651 + AluSq SINE Alu 1 297 -16 54 29 0 0 chr4 91887932 91888000 -110440347 + AT_rich Low_complexity Low_complexity 1 68 0 1587 165 16 0 chr4 91888105 91888353 -110439994 - AluJb SINE Alu -60 252 1 2068 119 6 44 chr4 91888698 91889016 -110439331 - AluSx SINE Alu -6 306 1 1651 165 14 17 chr4 91889596 91889893 -110438454 - AluJb SINE Alu -16 296 1 2302 81 0 7 chr4 91890714 91891010 -110437337 - AluSx SINE Alu -18 294 1 405 313 119 0 chr4 91891890 91892091 -110436256 + Charlie8 DNA MER1_type 13 237 -2180 237 281 0 0 chr4 91892168 91892225 -110436122 - MIR SINE MIR -57 151 95 238 220 0 0 chr4 91892495 91892554 -110435793 - HAL1 LINE L1 -140 2367 2309 204 206 0 0 chr4 91892607 91892641 -110435706 + (CACG)n Simple_repeat Simple_repeat 3 36 0 2971 269 76 68 chr4 91892641 91893804 -110434543 - HAL1 LINE L1 -285 2222 1069 786 187 0 8 chr4 91893804 91893938 -110434409 - FLAM_C SINE Alu 0 133 1 2971 269 76 68 chr4 91893938 91893991 -110434356 - HAL1 LINE L1 -1438 1069 1018 2062 124 88 22 chr4 91893991 91894401 -110433946 - L1MA5A LINE L1 0 6297 5861 2971 269 76 68 chr4 91894401 91895375 -110432972 - HAL1 LINE L1 -1489 1018 14 2783 214 94 25 chr4 91896368 91897208 -110431139 + L1MD2 LINE L1 5448 6345 -14 2383 100 13 0 chr4 91898355 91898664 -110429683 - AluSq SINE Alu 0 313 1 513 362 31 16 chr4 91899239 91899623 -110428724 - ERVL LTR ERVL -1459 4305 3916 1396 208 69 31 chr4 91899623 91900013 -110428334 + MLT1C LTR MaLR 1 405 -62 873 179 0 0 chr4 91900013 91900147 -110428200 - AluJo SINE Alu -178 134 1 485 293 24 0 chr4 91900213 91900377 -110427970 - ERVL LTR ERVL -1396 3600 3433 1175 253 48 39 chr4 91900408 91901087 -110427260 + L1ME LINE L1 5135 5822 -348 1683 33 0 0 chr4 91901177 91901387 -110426960 - L1HS LINE L1 -2196 3950 3741 * 11805 13 0 0 chr4 91901377 91903574 -110424773 + L1HS LINE L1 3960 6155 0 186 43 0 0 chr4 91903574 91903597 -110424750 + (A)n Simple_repeat Simple_repeat 1 23 0 222 118 0 0 chr4 91903842 91903876 -110424471 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 298 279 114 43 chr4 91904310 91904450 -110423897 - L2 LINE L2 0 3313 3164 33 25 0 0 chr4 91905064 91905104 -110423243 + AT_rich Low_complexity Low_complexity 1 40 0 556 275 151 9 chr4 91905396 91905614 -110422733 - MIR SINE MIR -13 249 1 246 347 74 0 chr4 91906699 91906794 -110421553 + MER5B DNA MER1_type 3 104 -74 1579 185 153 20 chr4 91906914 91907329 -110421018 - MER69 DNA AcHobo -3 2523 2026 2264 147 10 8 chr4 91907329 91907718 -110420629 - MLT1B LTR MaLR 0 390 1 1579 185 153 20 chr4 91907718 91907811 -110420536 - MER69 DNA AcHobo -500 2026 1947 297 182 30 0 chr4 91907919 91908018 -110420329 + (TA)n Simple_repeat Simple_repeat 1 102 0 785 274 39 43 chr4 91908099 91908354 -110419993 - MIR SINE MIR -1 261 8 182 329 26 40 chr4 91908368 91908444 -110419903 - L2 LINE L2 -221 3051 2977 253 276 0 0 chr4 91908680 91908738 -110419609 + (TG)n Simple_repeat Simple_repeat 1 58 0 1342 215 99 23 chr4 91908891 91909180 -110419167 - MER63B DNA MER1_type -637 425 97 2453 177 265 48 chr4 91909180 91910018 -110418329 + LTR28 LTR ERV1 1 1020 0 1342 215 99 23 chr4 91910018 91910123 -110418224 - MER63B DNA MER1_type -965 97 1 483 309 196 57 chr4 91910141 91910870 -110417477 - L2 LINE L2 -783 2531 1670 2261 109 0 13 chr4 91910870 91911181 -110417166 - AluSx SINE Alu -5 307 1 483 309 196 57 chr4 91911181 91911288 -110417059 - L2 LINE L2 -1644 1670 1579 414 266 168 44 chr4 91911297 91911661 -110416686 + MLT1H LTR MaLR 97 505 -44 322 305 92 15 chr4 91912291 91912422 -110415925 + MIR SINE MIR 8 148 -114 2198 107 21 0 chr4 91912825 91913116 -110415231 + AluSx SINE Alu 1 297 -15 307 301 121 69 chr4 91914086 91914259 -110414088 + MIR SINE MIR 9 190 -72 1264 262 96 3 chr4 91914815 91915247 -110413100 + MLT1H1 LTR MaLR 1 517 -38 225 254 18 0 chr4 91915412 91915467 -110412880 - MIR SINE MIR -11 251 196 459 278 69 6 chr4 91916126 91916288 -110412059 + MER69A DNA AcHobo 5 176 -1 633 121 0 0 chr4 91917227 91917318 -110411029 + FRAM/FAM SINE Alu 1 90 -86 2260 108 3 3 chr4 91917988 91918285 -110410062 - AluSx SINE Alu -15 297 1 2160 113 0 26 chr4 91918871 91919181 -110409166 + AluSx SINE Alu 1 302 -10 27 49 0 0 chr4 91920096 91920137 -110408210 + AT_rich Low_complexity Low_complexity 1 41 0 243 272 120 0 chr4 91921400 91921525 -110406822 + L2 LINE L2 2839 2978 -335 456 19 0 0 chr4 91921554 91921607 -110406740 + (CA)n Simple_repeat Simple_repeat 2 54 0 2104 128 3 3 chr4 91921892 91922188 -110406159 + AluSx SINE Alu 1 296 -16 23 68 0 0 chr4 91922625 91922669 -110405678 + AT_rich Low_complexity Low_complexity 1 44 0 2239 178 57 5 chr4 91923278 91923716 -110404631 + LOR1b LTR ERV1 1 461 0 241 244 203 32 chr4 91923735 91923799 -110404548 - MIR SINE MIR -2 260 208 2005 158 0 0 chr4 91923799 91924090 -110404257 + AluSx SINE Alu 6 296 -16 241 244 203 32 chr4 91924090 91924148 -110404199 - MIR SINE MIR -54 208 117 711 273 107 9 chr4 91924165 91924381 -110403966 - MIR SINE MIR -21 241 5 698 269 44 32 chr4 91925338 91925587 -110402760 - MIR SINE MIR -9 253 2 674 250 98 15 chr4 91925728 91925932 -110402415 - MIR SINE MIR -1 261 41 294 95 0 0 chr4 91927087 91927129 -110401218 + (TTTTC)n Simple_repeat Simple_repeat 4 45 0 313 241 83 28 chr4 91928907 91929015 -110399332 - MIR SINE MIR -11 251 138 791 279 22 60 chr4 91929022 91929291 -110399056 + MIR SINE MIR 3 261 -1 207 317 106 0 chr4 91929285 91929389 -110398958 - MIR SINE MIR -111 151 37 * 231 286 114 0 chr4 91929474 91929544 -110398803 + L2 LINE L2 3155 3232 -40 203 0 0 36 chr4 91929575 91929603 -110398744 + (TTTAA)n Simple_repeat Simple_repeat 2 28 0 217 154 58 0 chr4 91929632 91929684 -110398663 + A-rich Low_complexity Low_complexity 1 55 0 245 363 19 19 chr4 91929727 91929884 -110398463 - MIR SINE MIR -47 215 59 2144 133 39 26 chr4 91931402 91931787 -110396560 - MLT1B LTR MaLR 0 390 1 21 36 0 0 chr4 91932254 91932282 -110396065 + AT_rich Low_complexity Low_complexity 1 28 0 1994 83 72 0 chr4 91932372 91932671 -110395676 - AluSx SINE Alu 0 318 1 893 297 88 10 chr4 91932782 91933088 -110395259 - MLT1I LTR MaLR -22 387 58 1685 211 39 43 chr4 91933404 91933869 -110394478 - MLT1C LTR MaLR 0 467 5 1297 184 76 113 chr4 91933873 91934308 -110394039 - MLT1C-int LTR MaLR 0 1371 953 2005 168 60 3 chr4 91934361 91934730 -110393617 - MLT1B LTR MaLR 0 390 1 1176 148 155 11 chr4 91934747 91935018 -110393329 + MER4A LTR ERV1 1 310 -354 508 213 250 17 chr4 91935088 91935328 -110393019 + MER4C LTR ERV1 152 447 -18 1779 193 0 6 chr4 91935349 91935660 -110392687 - AluJb SINE Alu -2 310 2 4555 169 16 19 chr4 91935732 91936511 -110391836 - MLT1C-int LTR MaLR -491 880 103 2083 144 3 0 chr4 91936511 91936816 -110391531 + AluSx SINE Alu 1 306 -6 4555 169 16 19 chr4 91936816 91936919 -110391428 - MLT1C-int LTR MaLR -1268 103 1 520 267 20 13 chr4 91936919 91937069 -110391278 - MLT1C LTR MaLR 0 467 317 752 256 23 23 chr4 91937471 91937686 -110390661 + MIR SINE MIR 36 250 -12 307 68 0 0 chr4 91937728 91937772 -110390575 - L1P LINE L1 -946 5200 5157 1879 180 0 3 chr4 91937881 91938187 -110390160 - AluJb SINE Alu -7 305 1 807 207 55 37 chr4 91938187 91938515 -110389832 - MER69 DNA AcHobo -722 1804 1471 2641 214 48 24 chr4 91938585 91939213 -110389134 - MER69 DNA AcHobo -1846 680 34 919 55 86 0 chr4 91939213 91939341 -110389006 - MER85 DNA T2_type 0 139 1 2641 214 48 24 chr4 91939341 91939376 -110388971 - MER69 DNA AcHobo -2492 34 1 330 159 29 0 chr4 91939742 91939811 -110388536 - MLT1A1 LTR MaLR -4 361 291 32 0 0 0 chr4 91939813 91939845 -110388502 + AT_rich Low_complexity Low_complexity 1 32 0 2519 70 0 3 chr4 91939845 91940173 -110388174 - L1PB1 LINE L1 -1 6150 5824 1244 170 38 75 chr4 91940177 91940495 -110387852 - MLT1A1 LTR MaLR -59 306 1 2341 88 3 7 chr4 91940569 91940876 -110387471 - AluSg SINE Alu -4 306 1 266 250 120 20 chr4 91940879 91940979 -110387368 - MLT1J2 LTR MaLR -299 151 42 918 188 200 57 chr4 91941138 91941656 -110386691 - MLT1E3 LTR MaLR -1 623 1 6704 60 26 0 chr4 91942326 91943276 -110385071 + L1PA7 LINE L1 5175 6146 -8 2746 164 44 11 chr4 91943310 91943835 -110384512 - MER34 LTR ERV1 0 542 1 185 95 63 32 chr4 91944531 91944594 -110383753 + A-rich Low_complexity Low_complexity 6 70 0 2971 246 57 29 chr4 91944597 91945642 -110382705 - L1MC4 LINE L1 -49 7993 6919 1482 104 0 14 chr4 91945650 91945870 -110382477 - AluY SINE Alu -12 299 83 1019 95 36 42 chr4 91945886 91946054 -110382293 - AluSc SINE Alu -142 167 1 2431 57 0 3 chr4 91946067 91946365 -110381982 - AluY SINE Alu -14 297 1 440 197 25 167 chr4 91946366 91946564 -110381783 - L1MC4 LINE L1 -1116 6926 6757 811 278 63 0 chr4 91946572 91946777 -110381570 + MIR SINE MIR 45 262 0 2112 103 7 20 chr4 91947007 91947307 -110381040 - AluSx SINE Alu -15 297 2 227 309 12 12 chr4 91949019 91949100 -110379247 - MIR SINE MIR -108 154 74 287 273 0 0 chr4 91949111 91949177 -110379170 - MIR SINE MIR -1 261 196 2468 58 0 3 chr4 91949179 91949487 -110378860 - AluY SINE Alu -4 307 1 22 0 0 0 chr4 91950059 91950081 -110378266 + AT_rich Low_complexity Low_complexity 1 22 0 247 290 83 47 chr4 91950159 91950328 -110378019 - MER117 DNA MER1_type -9 188 14 1153 116 0 26 chr4 91950329 91950518 -110377829 + L1MD2 LINE L1 6175 6358 -1 235 240 40 100 chr4 91950606 91950681 -110377666 - MIR3 SINE MIR -17 191 121 2388 39 4 0 chr4 91950681 91951004 -110377343 + AluY SINE Alu 1 324 0 235 240 40 100 chr4 91951004 91951027 -110377320 - MIR3 SINE MIR -87 121 98 215 258 76 30 chr4 91951085 91951151 -110377196 - L2 LINE L2 -12 3260 3192 723 44 0 0 chr4 91951485 91951576 -110376771 + (CTATT)n Simple_repeat Simple_repeat 5 95 0 256 231 0 0 chr4 91951589 91951641 -110376706 + MER112 DNA MER1_type 201 252 -8 195 239 22 0 chr4 91952163 91952209 -110376138 - MIR SINE MIR -99 163 117 281 320 20 0 chr4 91952392 91952492 -110375855 - MIR SINE MIR -12 250 149 402 296 82 38 chr4 91952891 91953050 -110375297 - MER5A DNA MER1_type 0 189 13 2125 134 0 3 chr4 91953188 91953486 -110374861 + AluSx SINE Alu 1 297 -15 9016 91 3 11 chr4 91953598 91954953 -110373394 + L1PA8 LINE L1 3404 4747 -1399 456 252 0 0 chr4 91954953 91955076 -110373271 + (CACTA)n Simple_repeat Simple_repeat 3 125 0 6963 62 9 0 chr4 91955076 91956520 -110371827 + L1PA8 LINE L1 4716 6170 -2 792 279 88 24 chr4 91956656 91956986 -110371361 + MLT1J2 LTR MaLR 67 417 -33 280 230 125 72 chr4 91957605 91957757 -110370590 - MER112 DNA MER1_type -5 255 96 461 202 149 0 chr4 91957790 91957904 -110370443 + MER82 DNA MER2_type 2 132 -521 1895 118 46 52 chr4 91957914 91958398 -110369949 + LTR26 LTR ERV1 2 600 -3 2062 186 30 71 chr4 91958401 91958458 -110369889 + MER82 DNA MER2_type 138 196 -457 233 56 0 28 chr4 91958458 91958494 -110369853 + (TA)n Simple_repeat Simple_repeat 2 36 0 2062 186 30 71 chr4 91958494 91958973 -110369374 + MER82 DNA MER2_type 196 652 -1 1235 208 83 3 chr4 91958998 91959310 -110369037 - MER2 DNA MER2_type -6 339 3 297 0 0 0 chr4 91959313 91959346 -110369001 + (CA)n Simple_repeat Simple_repeat 2 34 0 230 261 0 43 chr4 91959349 91959418 -110368929 - MER112 DNA MER1_type -193 67 2 5622 151 22 22 chr4 91959723 91961792 -110366555 + L1MA4A LINE L1 4270 6296 -7 2270 90 3 0 chr4 91962471 91962761 -110365586 - AluSc SINE Alu -18 291 1 818 71 0 0 chr4 91962982 91963094 -110365253 + L1PB1 LINE L1 6040 6151 0 1886 175 80 10 chr4 91963381 91963793 -110364554 - L1MA4 LINE L1 0 6300 5860 11545 167 12 9 chr4 91963837 91967415 -110360932 - L1PB2 LINE L1 0 6151 2569 6214 118 88 11 chr4 91967413 91968761 -110359586 + L1PBb LINE L1 740 2189 -4015 * 1699 175 34 20 chr4 91968776 91969125 -110359222 + MLT1A1 LTR MaLR 1 354 -11 21 36 0 0 chr4 91969176 91969204 -110359143 + AT_rich Low_complexity Low_complexity 1 28 0 1089 258 25 34 chr4 91970723 91971045 -110357302 - MLT2D LTR ERVL 0 414 96 636 168 42 48 chr4 91971648 91971664 -110356683 - L1MA10 LINE L1 0 6334 6319 538 246 50 64 chr4 91971664 91971884 -110356463 - L1ME1 LINE L1 -5 6161 5945 801 224 151 5 chr4 91971893 91972112 -110356235 + MLT1E1 LTR MaLR 1 251 -403 3228 201 45 181 chr4 91972113 91972738 -110355609 - L1M4 LINE L1 -1443 4703 3995 229 149 0 90 chr4 91972738 91972805 -110355542 + HSMAR1 DNA Mariner 1 61 -1226 230 83 21 42 chr4 91972812 91972825 -110355522 - MADE1 DNA Mariner -28 52 40 3854 18 11 0 chr4 91972825 91973277 -110355070 + L1PA4 LINE L1 5699 6155 0 230 83 21 42 chr4 91973277 91973311 -110355036 - MADE1 DNA Mariner -40 40 6 3228 201 45 181 chr4 91973311 91973496 -110354851 - L1M4 LINE L1 -2157 3989 3780 2343 92 6 13 chr4 91973496 91973810 -110354537 - AluSx SINE Alu 0 312 1 3228 201 45 181 chr4 91973810 91974039 -110354308 - L1M4 LINE L1 -2366 3780 3522 2501 48 0 0 chr4 91974039 91974331 -110354016 - AluY SINE Alu -14 297 6 3228 201 45 181 chr4 91974331 91974659 -110353688 - L1M4 LINE L1 -2624 3522 3151 236 111 0 0 chr4 91974659 91974695 -110353652 - tRNA-Gly-GGG tRNA tRNA -38 36 1 3228 201 45 181 chr4 91974695 91975685 -110352662 - L1M4 LINE L1 -2995 3151 2529 203 356 69 0 chr4 91978450 91978551 -110349796 - L2 LINE L2 -49 3223 3116 344 296 158 13 chr4 91978665 91978817 -110349530 - MIR SINE MIR -77 185 12 435 149 0 0 chr4 91979421 91979495 -110348852 + (TG)n Simple_repeat Simple_repeat 2 75 0 198 0 0 0 chr4 91980404 91980426 -110347921 + (TG)n Simple_repeat Simple_repeat 1 22 0 273 354 0 0 chr4 91982705 91982880 -110345467 + (TAG)n Simple_repeat Simple_repeat 1 175 0 438 295 0 0 chr4 91982969 91983125 -110345222 + (CAG)n Simple_repeat Simple_repeat 1 156 0 326 329 0 0 chr4 91983128 91983213 -110345134 + (TAG)n Simple_repeat Simple_repeat 1 85 0 189 286 0 0 chr4 91983215 91983278 -110345069 + (CAG)n Simple_repeat Simple_repeat 1 63 0 480 299 0 0 chr4 91983290 91983467 -110344880 + (CAG)n Simple_repeat Simple_repeat 1 177 0 402 318 0 0 chr4 91983498 91983677 -110344670 + (CAG)n Simple_repeat Simple_repeat 2 180 0 291 308 0 0 chr4 91983698 91983818 -110344529 + (CAG)n Simple_repeat Simple_repeat 1 120 0 534 298 0 0 chr4 91983848 91984508 -110343839 + (CAG)n Simple_repeat Simple_repeat 1 660 0 432 301 0 0 chr4 91984521 91984687 -110343660 + (CAG)n Simple_repeat Simple_repeat 2 167 0 2283 82 7 0 chr4 91985699 91985993 -110342354 + AluSc SINE Alu 7 302 -7 460 278 8 0 chr4 91986330 91986463 -110341884 + MER94 DNA DNA 1 134 0 23 78 0 0 chr4 91987179 91987230 -110341117 + AT_rich Low_complexity Low_complexity 1 51 0 229 315 50 28 chr4 91987429 91987610 -110340737 - L1MC/D LINE L1 -1899 5909 5725 433 220 90 86 chr4 91987957 91988212 -110340135 - MER112 DNA MER1_type 0 256 1 191 36 36 0 chr4 91988318 91988346 -110340001 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 22 70 0 0 chr4 91988651 91988694 -110339653 + AT_rich Low_complexity Low_complexity 1 43 0 2532 199 87 16 chr4 91989749 91990371 -110337976 - LTR65 LTR ERV1 -3 666 1 1920 154 21 24 chr4 91990443 91990781 -110337566 - MER1B DNA MER1_type 0 337 1 2869 106 30 0 chr4 91991352 91991788 -110336559 - L1PA16 LINE L1 -10 6156 5708 504 207 50 65 chr4 91992339 91992439 -110335908 + MER5C DNA MER1_type 1 101 -223 2151 116 7 3 chr4 91992439 91992741 -110335606 - AluSx SINE Alu -9 303 1 504 207 50 65 chr4 91992741 91992902 -110335445 + MER5C DNA MER1_type 101 321 -3 2241 146 7 53 chr4 91992923 91993340 -110335007 + MER57A LTR ERV1 2 399 -4 569 228 53 53 chr4 91994411 91994600 -110333747 - MER5A DNA MER1_type 0 189 1 1853 167 9 89 chr4 91994995 91995154 -110333193 + MLT2D LTR ERVL 1 171 -243 2119 109 21 64 chr4 91995154 91995351 -110332996 - THE1B LTR MaLR -2 362 187 2209 87 27 3 chr4 91995351 91995650 -110332697 - AluSc SINE Alu -3 306 1 2119 109 21 64 chr4 91995650 91995829 -110332518 - THE1B LTR MaLR -177 187 2 1853 167 9 89 chr4 91995829 91996117 -110332230 + MLT2D LTR ERVL 171 412 -2 246 289 9 26 chr4 91996240 91996354 -110331993 - MER103 DNA DNA -52 114 3 307 244 106 14 chr4 91996630 91996786 -110331561 + MLT1F1 LTR MaLR 323 508 -59 414 0 0 0 chr4 91996786 91996832 -110331515 + (TAA)n Simple_repeat Simple_repeat 3 48 0 307 244 106 14 chr4 91996832 91996864 -110331483 + MLT1F1 LTR MaLR 508 536 -31 878 158 15 41 chr4 91996865 91997061 -110331286 + MLT1A1 LTR MaLR 1 191 -174 317 309 111 0 chr4 91997065 91997191 -110331156 + L2 LINE L2 3133 3272 0 2506 66 3 3 chr4 91997289 91997592 -110330755 + AluSq SINE Alu 1 303 -10 41 0 0 0 chr4 91997592 91997633 -110330714 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr4 91997852 91997877 -110330470 + AT_rich Low_complexity Low_complexity 1 25 0 1738 86 0 9 chr4 91998097 91998350 -110329997 + AluSc SINE Alu 71 309 0 2055 130 7 3 chr4 91998366 91998666 -110329681 + AluJb SINE Alu 1 301 -11 918 133 0 0 chr4 91999046 91999174 -110329173 + AluSq/x SINE Alu 1 128 -184 195 42 0 0 chr4 91999174 91999198 -110329149 + (TAA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr4 91999360 91999388 -110328959 + AT_rich Low_complexity Low_complexity 1 28 0 810 172 0 2 chr4 91999483 91999718 -110328629 + AluJ SINE Alu 1 291 -21 292 237 26 0 chr4 92000805 92000881 -110327466 - MER3 DNA MER1_type -131 78 1 618 277 12 6 chr4 92001425 92001591 -110326756 + MIR SINE MIR 53 219 -43 26 30 0 0 chr4 92002685 92002718 -110325629 + AT_rich Low_complexity Low_complexity 1 33 0 1700 170 4 7 chr4 92002873 92003150 -110325197 - AluJo SINE Alu -24 288 13 4374 121 4 17 chr4 92003171 92003874 -110324473 - L1MA2 LINE L1 0 6304 5611 454 260 40 6 chr4 92003957 92004130 -110324217 - L1MC5 LINE L1 -33 7928 7750 664 124 0 0 chr4 92004153 92004250 -110324097 - L1PA8 LINE L1 -6359 102 6 28299 109 29 27 chr4 92004254 92006285 -110322062 + L1PA8 LINE L1 100 2127 -4360 590 60 0 0 chr4 92006285 92006369 -110321978 - L1PA3 LINE L1 -4 6151 6068 28299 109 29 27 chr4 92006369 92010674 -110317673 + L1PA8 LINE L1 2127 6487 0 829 150 7 0 chr4 92010678 92010818 -110317529 + L1PA16 LINE L1 6023 6163 -3 742 209 37 54 chr4 92010832 92011129 -110317218 - L1MC5 LINE L1 -270 7691 7400 566 185 139 12 chr4 92011138 92011311 -110317036 - L1MC5 LINE L1 -777 7184 6990 363 23 0 0 chr4 92011329 92011373 -110316974 + (TG)n Simple_repeat Simple_repeat 1 44 0 1755 152 70 0 chr4 92011412 92011682 -110316665 + AluJo SINE Alu 1 289 -23 247 306 30 32 chr4 92011708 92011916 -110316431 - L1ME3 LINE L1 0 6170 5961 706 239 67 62 chr4 92012005 92012393 -110315954 - L1MC5 LINE L1 -428 7533 7141 2038 120 0 3 chr4 92012393 92012676 -110315671 - AluSg SINE Alu -28 282 1 706 239 67 62 chr4 92012676 92012693 -110315654 - L1MC5 LINE L1 -820 7141 7126 244 178 20 33 chr4 92012834 92012986 -110315361 + (TA)n Simple_repeat Simple_repeat 1 150 0 2786 172 6 23 chr4 92012986 92013530 -110314817 - MLT2B3 LTR ERVL -34 506 1 890 229 137 67 chr4 92013531 92014008 -110314339 - L1MC5 LINE L1 -832 7129 6680 1847 112 4 8 chr4 92014113 92014373 -110313974 - AluJb SINE Alu -21 291 33 616 314 36 36 chr4 92014744 92015165 -110313182 - HAL1b LINE L1 -708 640 220 317 313 120 42 chr4 92015203 92015462 -110312885 - HAL1 LINE L1 -1235 1272 994 22 0 0 0 chr4 92015572 92015594 -110312753 + AT_rich Low_complexity Low_complexity 1 22 0 305 246 79 8 chr4 92016225 92016427 -110311920 + MLT1G1 LTR MaLR 87 362 -233 260 230 0 0 chr4 92016488 92016562 -110311785 + MLT1G1 LTR MaLR 475 548 -7 182 242 0 132 chr4 92016765 92016856 -110311491 - L2 LINE L2 -478 2836 2758 267 311 101 42 chr4 92017104 92017223 -110311124 - L2 LINE L2 0 3272 3147 22 35 0 0 chr4 92018644 92018673 -110309674 + AT_rich Low_complexity Low_complexity 1 29 0 29 60 0 0 chr4 92018831 92018881 -110309466 + AT_rich Low_complexity Low_complexity 1 50 0 36 53 0 0 chr4 92019386 92019443 -110308904 + AT_rich Low_complexity Low_complexity 1 57 0 217 193 53 35 chr4 92019533 92019590 -110308757 + L2 LINE L2 3256 3313 0 315 0 0 0 chr4 92021227 92021262 -110307085 + (TA)n Simple_repeat Simple_repeat 1 35 0 1069 175 0 0 chr4 92021263 92021434 -110306913 - AluJb SINE Alu -21 291 121 482 267 27 13 chr4 92021451 92021601 -110306746 - MER5B DNA MER1_type -26 152 1 3957 135 20 5 chr4 92021624 92022261 -110306086 - MER39B LTR ERV1 -2 651 5 1945 168 47 54 chr4 92022277 92022953 -110305394 - MER4A LTR ERV1 0 695 1 339 65 0 0 chr4 92023497 92023543 -110304804 + (TG)n Simple_repeat Simple_repeat 1 46 0 2172 181 12 5 chr4 92023787 92024213 -110304134 - L1MB8 LINE L1 -11 6167 5739 954 222 0 0 chr4 92024592 92024772 -110303575 + MER5A DNA MER1_type 1 180 -9 25 0 0 0 chr4 92024931 92024956 -110303391 + AT_rich Low_complexity Low_complexity 1 25 0 873 256 32 9 chr4 92025356 92025575 -110302772 - MIR SINE MIR -34 228 5 330 298 8 53 chr4 92026443 92026574 -110301773 - MIR SINE MIR -46 216 92 428 231 0 0 chr4 92026582 92026660 -110301687 + MER81 DNA DNA 1 78 -36 216 0 0 0 chr4 92028380 92028404 -110299943 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1872 96 56 46 chr4 92028858 92029040 -110299307 - AluSc SINE Alu -3 306 118 2322 71 6 6 chr4 92029040 92029351 -110298996 - AluY SINE Alu 0 311 1 1872 96 56 46 chr4 92029351 92029471 -110298876 - AluSc SINE Alu -191 118 1 272 288 0 50 chr4 92031422 92031502 -110296845 - L2 LINE L2 0 3313 3238 2034 128 37 0 chr4 92032686 92032983 -110295364 + AluSq SINE Alu 1 308 -5 360 274 37 58 chr4 92033063 92033085 -110295262 - MER5A DNA MER1_type -32 146 125 351 0 0 0 chr4 92033085 92033124 -110295223 + (TG)n Simple_repeat Simple_repeat 2 40 0 360 274 37 58 chr4 92033124 92033238 -110295109 - MER5A DNA MER1_type -53 125 18 1799 130 13 5 chr4 92033917 92034359 -110293988 - MER1A DNA MER1_type 0 529 46 1038 140 0 6 chr4 92034988 92035166 -110293181 - L1MA5A LINE L1 -10 6287 6111 300 241 48 12 chr4 92035166 92035249 -110293098 - L1MC4 LINE L1 -1343 6699 6614 2133 70 0 14 chr4 92035282 92035569 -110292778 - L1PA13 LINE L1 -1 6162 5880 3699 99 28 0 chr4 92035576 92036143 -110292204 - L1MA5A LINE L1 -182 6115 5533 186 305 54 78 chr4 92036465 92036632 -110291715 - L2 LINE L2 -337 2976 2814 186 364 23 0 chr4 92036792 92036880 -110291467 - MIR SINE MIR -125 137 48 * 193 281 47 0 chr4 92036859 92036923 -110291424 - L2 LINE L2 -529 2785 2719 29 28 0 0 chr4 92038421 92038457 -110289890 + AT_rich Low_complexity Low_complexity 1 36 0 616 277 16 21 chr4 92038490 92038678 -110289669 + MLT1J LTR MaLR 1 187 -324 7195 184 19 14 chr4 92039013 92040704 -110287643 + L1PB4 LINE L1 3022 4721 -1425 1982 118 47 94 chr4 92040704 92041086 -110287261 - THE1B LTR MaLR 0 364 1 10376 100 43 1 chr4 92041092 92042602 -110285745 - THE1B-int LTR MaLR -6 1574 1 2055 113 49 29 chr4 92042609 92042954 -110285393 - THE1B LTR MaLR -12 352 1 2377 193 34 27 chr4 92042954 92043261 -110285086 + L1PB4 LINE L1 4717 5020 -1143 2231 120 0 0 chr4 92043261 92043560 -110284787 + AluSc SINE Alu 1 299 -10 2377 193 34 27 chr4 92043560 92043888 -110284459 + L1PB4 LINE L1 5020 5358 -805 2748 141 31 14 chr4 92044002 92044514 -110283833 + L1PB4 LINE L1 5367 5887 -269 300 288 36 18 chr4 92044617 92044728 -110283619 - L1MEc LINE L1 -3276 2939 2827 258 213 13 0 chr4 92044737 92044812 -110283535 - L1M4 LINE L1 -1663 4483 4408 2087 123 0 0 chr4 92044849 92045156 -110283191 + AluSx SINE Alu 1 307 0 249 277 0 0 chr4 92045156 92045221 -110283126 - L1MEc LINE L1 -3358 2857 2793 1364 234 79 39 chr4 92045227 92045938 -110282409 - L1MEc LINE L1 -3476 2739 2043 298 138 0 31 chr4 92046065 92046130 -110282217 + (GGGA)n Simple_repeat Simple_repeat 4 66 0 502 261 118 37 chr4 92046130 92046402 -110281945 - LTR33 LTR ERVL -102 419 126 709 200 22 87 chr4 92047725 92047955 -110280392 - L1ME2 LINE L1 -2 6162 5948 4296 135 55 75 chr4 92047955 92048984 -110279363 - MER52C LTR ERV1 0 1278 270 541 125 0 0 chr4 92048985 92049073 -110279274 - MER52C LTR ERV1 -1176 102 15 1268 181 101 127 chr4 92049075 92049318 -110279029 - L1ME2 LINE L1 -215 5949 5701 848 206 14 73 chr4 92049318 92049537 -110278810 - MER63A DNA MER1_type -4 206 1 1268 181 101 127 chr4 92049537 92050083 -110278264 - L1ME2 LINE L1 -463 5701 5170 466 219 115 115 chr4 92050083 92050421 -110277926 - L1ME2 LINE L1 -1401 4745 4408 440 270 39 45 chr4 92050451 92050788 -110277559 - L1ME2 LINE L1 -2833 3313 2979 537 223 151 7 chr4 92051110 92051249 -110277098 - MER5B DNA MER1_type -3 175 17 3028 163 15 0 chr4 92053874 92054408 -110273939 + MER34 LTR ERV1 1 542 0 2222 114 3 7 chr4 92054662 92054970 -110273377 - AluSp SINE Alu -6 307 1 2139 233 77 21 chr4 92056876 92057438 -110270909 - MLT1E LTR MaLR 0 593 1 333 324 84 36 chr4 92057680 92057955 -110270392 + L2 LINE L2 1327 1614 -1700 1649 173 0 85 chr4 92058066 92058407 -110269940 - AluJb SINE Alu 0 312 1 2903 256 121 53 chr4 92058460 92059961 -110268386 + L2 LINE L2 1686 3284 -29 1983 113 7 3 chr4 92060136 92060418 -110267929 - AluSx SINE Alu -8 304 22 278 358 65 32 chr4 92060558 92060804 -110267543 + L2 LINE L2 2286 2539 -775 202 333 95 0 chr4 92060904 92060988 -110267359 + L2 LINE L2 2686 2777 -537 327 368 71 74 chr4 92061099 92061203 -110267144 + L2 LINE L2 2893 2996 -276 2010 134 3 0 chr4 92061203 92061509 -110266838 - AluSx SINE Alu 0 307 1 327 368 71 74 chr4 92061509 92061767 -110266580 + L2 LINE L2 2996 3255 -17 2187 118 0 3 chr4 92063175 92063472 -110264875 - AluSg SINE Alu -14 296 1 398 278 83 65 chr4 92063631 92063847 -110264500 - MIR SINE MIR -37 225 6 201 231 0 0 chr4 92063917 92063956 -110264391 + (TG)n Simple_repeat Simple_repeat 2 40 0 514 288 24 33 chr4 92063974 92064186 -110264161 - LTR33 LTR ERVL -7 514 305 1803 140 16 38 chr4 92064247 92064561 -110263786 + MER1B DNA MER1_type 33 339 0 458 322 7 0 chr4 92064563 92064706 -110263641 - ERVL LTR ERVL -2256 3508 3365 2105 146 30 25 chr4 92064710 92065072 -110263275 + THE1B LTR MaLR 1 364 0 10190 83 8 93 chr4 92065072 92065452 -110262895 + THE1B-int LTR MaLR 1 412 -1168 992 140 0 0 chr4 92065452 92065588 -110262759 + AluSq/x SINE Alu 1 136 -176 2310 119 6 0 chr4 92065588 92065899 -110262448 + AluSq SINE Alu 1 313 0 10190 83 8 93 chr4 92065899 92067108 -110261239 + THE1B-int LTR MaLR 410 1580 0 2219 127 30 22 chr4 92067108 92067469 -110260878 + THE1B LTR MaLR 1 364 0 404 223 19 10 chr4 92068764 92068867 -110259480 - LTR33 LTR ERVL -4 517 414 1835 114 34 4 chr4 92068873 92069135 -110259212 + AluSq SINE Alu 1 270 -43 1038 69 25 6 chr4 92069140 92069300 -110259047 + (GAAA)n Simple_repeat Simple_repeat 3 165 0 2489 113 25 0 chr4 92069461 92069816 -110258531 + THE1B LTR MaLR 1 364 0 10383 92 6 61 chr4 92069816 92071480 -110256867 + THE1B-int LTR MaLR 1 1572 -8 2146 154 31 0 chr4 92071488 92071839 -110256508 + THE1B LTR MaLR 3 364 0 334 238 46 53 chr4 92072877 92072899 -110255448 + MER103 DNA DNA 8 29 -137 1771 196 44 23 chr4 92072899 92073287 -110255060 - MSTD LTR MaLR 0 396 1 334 238 46 53 chr4 92073287 92073415 -110254932 + MER103 DNA DNA 29 157 -9 203 365 26 17 chr4 92073968 92074083 -110254264 + MER5A DNA MER1_type 52 167 -22 406 298 169 19 chr4 92074336 92074655 -110253692 + L2 LINE L2 2173 2539 -775 506 258 23 0 chr4 92075241 92075373 -110252974 + L1ME1 LINE L1 5980 6114 -52 422 259 25 49 chr4 92076777 92076803 -110251544 - L2 LINE L2 0 3313 3288 1642 217 10 0 chr4 92076803 92077093 -110251254 + AluJo SINE Alu 1 293 -19 422 259 25 49 chr4 92077093 92077228 -110251119 - L2 LINE L2 -25 3288 3156 84 65 0 0 chr4 92077249 92077403 -110250944 + AT_rich Low_complexity Low_complexity 1 154 0 1197 138 45 63 chr4 92077434 92077703 -110250644 + MLT1C LTR MaLR 1 264 -203 1936 154 53 8 chr4 92078020 92078377 -110249970 - THE1C LTR MaLR 0 375 3 199 364 114 0 chr4 92078409 92078541 -110249806 + L2 LINE L2 3125 3271 -1 254 238 133 48 chr4 92078748 92078853 -110249494 + MIR SINE MIR 114 227 -35 620 313 89 37 chr4 92078940 92079584 -110248763 - L2 LINE L2 -55 3217 2549 276 279 190 13 chr4 92079704 92079862 -110248485 - L2 LINE L2 -962 2352 2167 932 113 0 8 chr4 92081795 92081928 -110246419 + AluJ SINE Alu 2 133 -169 2236 82 0 0 chr4 92082866 92083145 -110245202 - AluSc SINE Alu -30 279 1 250 281 16 0 chr4 92083241 92083305 -110245042 + L2 LINE L2 3174 3238 -34 2076 37 30 4 chr4 92084049 92084320 -110244027 - L1PA2 LINE L1 0 6155 5878 4839 133 14 4 chr4 92084320 92085112 -110243235 - L1MA3 LINE L1 -8 6297 5495 631 276 68 74 chr4 92085648 92086232 -110242115 + HAL1b LINE L1 256 836 -512 1514 237 53 38 chr4 92086328 92086910 -110241437 + L1MCa LINE L1 1062 1652 -4774 827 142 0 77 chr4 92086910 92087065 -110241282 + FLAM_C SINE Alu 1 143 0 1643 262 44 22 chr4 92087075 92088084 -110240263 + L1MCa LINE L1 1834 2835 -3591 226 212 127 110 chr4 92088290 92088408 -110239939 + MLT1K LTR MaLR 301 420 -168 717 292 37 120 chr4 92088465 92088586 -110239761 - L2 LINE L2 -43 3270 3141 183 80 0 0 chr4 92088586 92088611 -110239736 + (TG)n Simple_repeat Simple_repeat 1 25 0 717 292 37 120 chr4 92088611 92088948 -110239399 - L2 LINE L2 -172 3141 2850 747 81 0 0 chr4 92088971 92089070 -110239277 - HY3 scRNA scRNA -1 100 2 750 257 18 22 chr4 92089143 92089365 -110238982 - L1MC/D LINE L1 -2091 5717 5497 634 250 80 19 chr4 92089399 92089611 -110238736 - MIR SINE MIR -26 236 12 323 206 0 14 chr4 92090007 92090080 -110238267 - MER52A LTR ERV1 0 1755 1684 * 2920 181 89 140 chr4 92090072 92091224 -110237123 - MER52A LTR ERV1 -559 1196 103 3721 194 33 58 chr4 92091329 92092323 -110236024 - LTR5 LTR ERVK 0 969 1 297 281 144 14 chr4 92092423 92092569 -110235778 - L2 LINE L2 -1648 1666 1502 879 206 0 0 chr4 92092575 92092730 -110235617 + AluJb SINE Alu 136 290 -22 524 268 39 20 chr4 92092736 92092889 -110235458 - L2 LINE L2 -1805 1509 1354 898 296 29 7 chr4 92092911 92093354 -110234993 + L1MC4a LINE L1 2548 3000 -3426 722 281 42 5 chr4 92093359 92093765 -110234582 + L1MC4a LINE L1 3069 3489 -2937 1521 120 16 4 chr4 92094278 92094520 -110233827 - Tigger3(Golem) DNA MER2_type -13 3016 2772 517 144 67 0 chr4 92094515 92094605 -110233742 - Tigger3(Golem) DNA MER2_type -2885 144 49 * 1973 156 0 0 chr4 92094903 92095192 -110233155 - AluJb SINE Alu -22 290 2 539 327 0 6 chr4 92095384 92095546 -110232801 + MER45A DNA AcHobo 5 165 -13 369 325 49 28 chr4 92096360 92096646 -110231701 + L1MC4a LINE L1 4598 4889 -1537 1856 165 24 38 chr4 92096949 92097318 -110231029 - THE1B LTR MaLR 0 364 1 6908 159 17 36 chr4 92097320 92098582 -110229765 - THE1B-int LTR MaLR -2 1578 341 11100 37 4 0 chr4 92098582 92098719 -110229628 - L1PA5 LINE L1 -3 6151 6016 189 0 0 0 chr4 92098719 92098740 -110229607 + (CCCCCT)n Simple_repeat Simple_repeat 2 22 0 11100 37 4 0 chr4 92098740 92100700 -110227647 - L1PA5 LINE L1 -138 6016 4033 1204 107 52 56 chr4 92100700 92100933 -110227414 - THE1C LTR MaLR -143 232 1 27 49 0 0 chr4 92100972 92101013 -110227334 + AT_rich Low_complexity Low_complexity 1 41 0 242 265 49 20 chr4 92101270 92101372 -110226975 + L1MC4a LINE L1 5661 5765 -757 420 317 79 93 chr4 92101382 92101941 -110226406 + L1MC4a LINE L1 5823 6373 -1715 2294 120 29 0 chr4 92101976 92102358 -110225989 - L1PA16 LINE L1 -283 5883 5491 771 204 53 11 chr4 92102360 92102589 -110225758 + L1PA16 LINE L1 5903 6163 0 24 67 0 0 chr4 92102619 92102664 -110225683 + AT_rich Low_complexity Low_complexity 1 45 0 789 151 25 13 chr4 92102906 92103065 -110225282 + L1MB5 LINE L1 6014 6174 0 237 269 26 0 chr4 92106360 92106438 -110221909 + L1MA9 LINE L1 6041 6120 -192 355 260 94 0 chr4 92106602 92106698 -110221649 - MIR SINE MIR -50 212 108 27 29 0 0 chr4 92107035 92107069 -110221278 + AT_rich Low_complexity Low_complexity 1 34 0 2542 140 16 50 chr4 92107203 92107688 -110220659 + Cheshire DNA MER1_type 1701 2169 -251 5566 99 24 19 chr4 92107785 92108531 -110219816 + L1MA3 LINE L1 5391 6144 -161 7035 63 0 0 chr4 92108531 92109620 -110218727 + L1PA7 LINE L1 5062 6151 -3 5566 99 24 19 chr4 92109620 92109780 -110218567 + L1MA3 LINE L1 6144 6302 -3 326 270 115 43 chr4 92109806 92110224 -110218123 - L1MCa LINE L1 -4080 2527 2080 784 269 74 57 chr4 92110253 92110324 -110218023 - L1MCa LINE L1 -4452 1974 1906 1767 108 50 0 chr4 92110324 92110601 -110217746 - L1PA13 LINE L1 0 6163 5873 784 269 74 57 chr4 92110601 92111426 -110216921 - L1MCa LINE L1 -4520 1906 879 991 258 45 15 chr4 92111784 92112118 -110216229 + LTR16A LTR ERVL 14 357 -93 2276 101 3 3 chr4 92112240 92112537 -110215810 - AluSc SINE Alu -12 297 1 378 288 48 7 chr4 92112817 92113088 -110215259 - L1MEc LINE L1 -4620 2024 1743 433 274 48 50 chr4 92113211 92113579 -110214768 - L1MEc LINE L1 -4925 1617 1270 462 299 46 25 chr4 92113597 92113921 -110214426 - L1MEc LINE L1 -5472 1353 1023 294 384 29 24 chr4 92114045 92114456 -110213891 - L1MEc LINE L1 -5947 878 466 398 260 47 8 chr4 92114824 92114951 -110213396 - MLT1J LTR MaLR -377 134 3 213 121 0 0 chr4 92115407 92115440 -110212907 + (TC)n Simple_repeat Simple_repeat 2 34 0 2187 137 0 6 chr4 92115685 92116037 -110212310 - AluSx SINE Alu 0 350 1 235 324 98 0 chr4 92116534 92116636 -110211711 + L2 LINE L2 3134 3245 -27 844 192 124 56 chr4 92116645 92117073 -110211274 - MLT1D LTR MaLR 0 505 49 33 0 0 0 chr4 92117958 92117991 -110210356 + AT_rich Low_complexity Low_complexity 1 33 0 268 300 0 0 chr4 92118440 92118500 -110209847 - MER117 DNA MER1_type -54 143 84 290 300 0 0 chr4 92119005 92119095 -110209252 + MIR SINE MIR 172 261 -1 198 71 0 0 chr4 92119112 92119140 -110209207 + (CAT)n Simple_repeat Simple_repeat 3 30 0 279 284 59 29 chr4 92119309 92119411 -110208936 - MIR SINE MIR -40 222 118 205 255 0 0 chr4 92119633 92119680 -110208667 + CT-rich Low_complexity Low_complexity 5 51 0 1653 171 45 0 chr4 92120437 92120724 -110207623 + AluJo SINE Alu 2 301 -11 21 0 0 0 chr4 92120833 92120854 -110207493 + AT_rich Low_complexity Low_complexity 1 21 0 43621 34 22 1 chr4 92121316 92127342 -110201005 + L1PA2 LINE L1 1 6152 -3 22 0 0 0 chr4 92127342 92127364 -110200983 + AT_rich Low_complexity Low_complexity 1 22 0 1276 261 29 51 chr4 92129121 92129531 -110198816 - LTR16C LTR ERVL 0 491 91 1169 269 35 12 chr4 92129669 92130015 -110198332 + L1MC4 LINE L1 7238 7591 -451 2558 235 37 82 chr4 92130028 92130859 -110197488 - MER21B LTR ERV1 -54 809 16 198 0 0 0 chr4 92130868 92130890 -110197457 + (TA)n Simple_repeat Simple_repeat 1 22 0 189 0 0 0 chr4 92130889 92130910 -110197437 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 217 132 0 0 chr4 92130911 92130949 -110197398 + (TA)n Simple_repeat Simple_repeat 1 38 0 1207 215 73 13 chr4 92130949 92131265 -110197082 + L1MC4 LINE L1 7566 7900 -142 277 219 6 3 chr4 92131269 92131337 -110197010 + L1MC4 LINE L1 7926 8040 -1 522 139 0 0 chr4 92131829 92131915 -110196432 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 1708 144 40 22 chr4 92131917 92132195 -110196152 - AluJb SINE Alu -8 304 22 1587 163 42 25 chr4 92132412 92132695 -110195652 - AluJo SINE Alu -24 288 1 2394 75 0 3 chr4 92133832 92134127 -110194220 - AluY SINE Alu -2 309 16 1670 274 35 14 chr4 92185327 92185837 -110142510 - LTR33 LTR ERVL 0 521 1 659 277 69 36 chr4 92185917 92186220 -110142127 + L1ME LINE L1 5479 5791 -330 1062 169 28 5 chr4 92186233 92186449 -110141898 + MER33 DNA MER1_type 1 210 -97 254 246 8 102 chr4 92186721 92186839 -110141508 - MER34 LTR ERV1 -395 147 41 395 229 137 0 chr4 92186899 92187030 -110141317 + MIR SINE MIR 77 225 -37 264 137 0 0 chr4 92187183 92187234 -110141113 + (T)n Simple_repeat Simple_repeat 1 51 0 328 239 15 30 chr4 92187807 92187941 -110140406 - L2 LINE L2 -211 3061 2930 1146 175 29 19 chr4 92188428 92188816 -110139531 + L1M4 LINE L1 5092 5482 -696 1395 229 117 51 chr4 92188986 92189239 -110139108 + MLT2B1 LTR ERVL 1 236 -284 297 0 0 0 chr4 92189239 92189272 -110139075 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1395 229 117 51 chr4 92189272 92189459 -110138888 + MLT2B1 LTR ERVL 236 478 -42 306 0 0 0 chr4 92189459 92189493 -110138854 + (CA)n Simple_repeat Simple_repeat 2 35 0 1395 229 117 51 chr4 92189493 92189539 -110138808 + MLT2B1 LTR ERVL 478 520 0 222 243 65 19 chr4 92190197 92190304 -110138043 - MIR3 SINE MIR -21 187 76 1899 154 51 0 chr4 92191457 92191749 -110136598 - AluJb SINE Alu -5 307 1 459 321 23 0 chr4 92191963 92192094 -110136253 + MER94 DNA DNA 1 134 0 1227 135 5 16 chr4 92192148 92192340 -110136007 - AluSg/x SINE Alu -8 301 112 2882 3 0 0 chr4 92192948 92193250 -110135097 + AluYa5 SINE Alu 3 304 -7 1789 169 13 13 chr4 92194382 92194690 -110133657 - AluJb SINE Alu -3 309 2 595 283 25 29 chr4 92194690 92194930 -110133417 - LTR16A1 LTR ERVL -6 451 213 197 255 20 0 chr4 92195161 92195212 -110133135 - L3 LINE CR1 -204 1373 1322 274 292 28 0 chr4 92195491 92195563 -110132784 - LTR67 LTR ERVL -370 187 114 759 214 60 0 chr4 92196112 92196280 -110132067 + MER5B DNA MER1_type 1 178 0 292 244 44 37 chr4 92196343 92196478 -110131869 + L2 LINE L2 2871 3006 -266 2848 3 0 7 chr4 92196567 92196872 -110131475 + AluYa5 SINE Alu 1 303 -8 189 121 0 0 chr4 92196995 92197028 -110131319 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 185 308 75 19 chr4 92197350 92197457 -110130890 - L2 LINE L2 -1 3271 3159 14483 68 13 7 chr4 92200667 92202956 -110125391 - L1P3 LINE L1 -404 5750 3459 431 254 54 15 chr4 92203977 92204107 -110124240 + MIR SINE MIR 45 179 -83 1461 163 19 11 chr4 92205052 92205316 -110123031 - L1P LINE L1 -2088 4058 3793 338 256 146 15 chr4 92205316 92205453 -110122894 + MIR SINE MIR 101 255 -7 522 212 114 8 chr4 92205527 92205659 -110122688 + MER5A DNA MER1_type 1 146 -43 1839 253 48 23 chr4 92205659 92206137 -110122210 + MLT1F LTR MaLR 1 490 -52 7053 43 1 1 chr4 92206150 92206990 -110121357 - L1PA5 LINE L1 -4 6150 5311 421 138 0 0 chr4 92207005 92207070 -110121277 + MLT1F LTR MaLR 501 565 -2 244 235 0 0 chr4 92207072 92207123 -110121224 + MER5A DNA MER1_type 139 189 0 1128 152 5 11 chr4 92207206 92207390 -110120957 + AluSq SINE Alu 1 183 -130 380 292 50 0 chr4 92207695 92207815 -110120532 + L2 LINE L2 3147 3272 0 1037 135 0 19 chr4 92209202 92209358 -110118989 - MER4B LTR ERV1 -457 153 1 643 189 91 14 chr4 92209358 92209500 -110118847 + MER46C DNA MER2_type 186 338 0 1874 141 65 83 chr4 92209570 92209967 -110118380 + MLT1B LTR MaLR 1 390 0 4618 90 3 2 chr4 92209983 92210582 -110117765 - MER4A LTR ERV1 0 600 1 1269 180 152 4 chr4 92210640 92210884 -110117463 + AluJo SINE Alu 2 281 -31 227 31 31 0 chr4 92210889 92210921 -110117426 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 346 114 29 14 chr4 92211032 92211102 -110117245 + CT-rich Low_complexity Low_complexity 1 71 0 24 32 0 0 chr4 92211950 92211981 -110116366 + AT_rich Low_complexity Low_complexity 1 31 0 353 257 106 39 chr4 92212593 92212772 -110115575 - MLT1G1 LTR MaLR -6 536 346 2856 96 6 24 chr4 92212876 92213409 -110114938 + L1PA11 LINE L1 5137 5662 -512 1363 145 0 84 chr4 92213409 92213671 -110114676 + AluSc SINE Alu 56 295 -14 3122 99 49 57 chr4 92213674 92214200 -110114147 + L1PA11 LINE L1 5653 6174 0 420 227 132 35 chr4 92214279 92214466 -110113881 - MLT1G1 LTR MaLR -388 167 6 39920 42 1 1 chr4 92214566 92219363 -110108984 - L1P LINE L1 -1129 5017 221 414 229 25 74 chr4 92220381 92220503 -110107844 - MIR SINE MIR -116 146 31 4074 91 2 0 chr4 92220650 92221202 -110107145 + L1PA14 LINE L1 5600 6152 -9 22 0 0 0 chr4 92221588 92221610 -110106737 + AT_rich Low_complexity Low_complexity 1 22 0 1545 290 111 12 chr4 92221730 92222334 -110106013 + L2 LINE L2 2312 2975 -339 756 209 91 118 chr4 92222359 92222766 -110105581 - MLT1A1 LTR MaLR 0 365 1 789 220 68 68 chr4 92222766 92223062 -110105285 + L2 LINE L2 3011 3306 -7 954 283 12 4 chr4 92224380 92224624 -110103723 + MIR SINE MIR 15 260 -2 472 255 71 5 chr4 92227711 92227895 -110100452 - LTR33A LTR ERVL -267 256 61 1942 134 72 6 chr4 92230037 92230357 -110097990 + MER61A LTR ERV1 1 341 -2 4920 116 29 34 chr4 92230433 92231584 -110096763 + pTR5 LTR ERV1 733 2021 -417 301 219 0 12 chr4 92231588 92231670 -110096677 + LTR30 LTR ERV1 544 624 -98 1427 116 1 4 chr4 92231670 92231912 -110096435 + pTR5 LTR ERV1 49 392 -2046 599 242 25 12 chr4 92232544 92232705 -110095642 + MER45 DNA AcHobo 31 193 -847 533 214 34 0 chr4 92232699 92232816 -110095531 + MER45 DNA AcHobo 1459 1579 -2 * 2849 181 8 6 chr4 92232867 92233381 -110094966 - MLT2B2 LTR ERVL 0 515 1 288 217 280 28 chr4 92233587 92233706 -110094641 + MARNA DNA Mariner 389 477 -109 2240 117 0 0 chr4 92233706 92234005 -110094342 + AluSx SINE Alu 1 299 -13 288 217 280 28 chr4 92234005 92234028 -110094319 + MARNA DNA Mariner 477 567 -19 864 279 55 46 chr4 92234624 92234950 -110093397 + L2 LINE L2 2032 2360 -954 1051 297 32 19 chr4 92235021 92235395 -110092952 - LTR16C LTR ERVL -89 402 24 1786 276 69 26 chr4 92235448 92236348 -110091999 + L2 LINE L2 2375 3313 0 416 237 112 56 chr4 92236730 92236979 -110091368 + MLT1H LTR MaLR 260 522 -27 2649 189 89 108 chr4 92237822 92239053 -110089294 - L1MDa LINE L1 -4863 1677 314 6715 51 6 2 chr4 92239153 92240000 -110088347 + L1PA4 LINE L1 5306 6155 0 361 291 16 0 chr4 92240138 92240265 -110088082 + L1ME3 LINE L1 5554 5682 -439 21 0 0 0 chr4 92240357 92240378 -110087969 + AT_rich Low_complexity Low_complexity 1 21 0 245 229 37 55 chr4 92240491 92240600 -110087747 + L1ME4a LINE L1 5968 6074 -47 24 0 0 0 chr4 92240628 92240652 -110087695 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 92240777 92240801 -110087546 + AT_rich Low_complexity Low_complexity 1 24 0 1809 165 0 14 chr4 92240801 92241098 -110087249 - AluJb SINE Alu -17 295 3 189 0 0 0 chr4 92242102 92242123 -110086224 + (TTTAA)n Simple_repeat Simple_repeat 3 23 0 2959 76 59 0 chr4 92242123 92242529 -110085818 - L1PA10 LINE L1 -19 6149 5720 207 256 0 0 chr4 92242973 92243012 -110085335 - MIR SINE MIR -6 256 218 777 254 44 26 chr4 92243012 92243284 -110085063 + MLT1J1 LTR MaLR 15 291 -155 212 212 15 0 chr4 92243595 92243661 -110084686 + (TA)n Simple_repeat Simple_repeat 2 68 0 1342 263 57 2 chr4 92244140 92244600 -110083747 + L1ME3 LINE L1 5678 6162 0 423 0 0 0 chr4 92245468 92245515 -110082832 + (TGGA)n Simple_repeat Simple_repeat 3 49 0 395 235 158 54 chr4 92249714 92249935 -110078412 + L2 LINE L2 3070 3313 0 1990 119 0 34 chr4 92250002 92250321 -110078026 + AluSx SINE Alu 1 309 0 854 194 0 0 chr4 92250987 92251147 -110077200 + HERVH LTR ERV1 4990 5149 -2564 1330 116 23 5 chr4 92251148 92251364 -110076983 + HERVH LTR ERV1 5600 5819 -1894 2420 74 45 13 chr4 92251364 92251742 -110076605 + HERVH LTR ERV1 7324 7713 0 3610 40 5 2 chr4 92251742 92252189 -110076158 + LTR7 LTR ERV1 1 448 -2 238 154 0 0 chr4 92252311 92252350 -110075997 - L2 LINE L2 0 3313 3275 300 98 0 0 chr4 92252350 92252391 -110075956 - MER50 LTR ERV1 0 734 694 301 266 25 0 chr4 92252401 92252480 -110075867 - L2 LINE L2 -34 3279 3199 21 36 0 0 chr4 92253438 92253466 -110074881 + AT_rich Low_complexity Low_complexity 1 28 0 1636 93 22 4 chr4 92253552 92253778 -110074569 - MER30 DNA MER1_type 0 230 1 5582 212 20 10 chr4 92253864 92254715 -110073632 + L1 LINE L1 3371 4243 -1903 3987 148 2 2 chr4 92254715 92255349 -110072998 - MER41B LTR ERV1 0 635 2 5582 212 20 10 chr4 92255349 92255943 -110072404 + L1 LINE L1 4243 4830 -1316 2172 204 31 56 chr4 92255945 92256690 -110071657 - L1M4 LINE L1 -600 5574 4848 603 119 104 0 chr4 92256694 92256828 -110071519 + L1MB2 LINE L1 6021 6168 -3 766 254 223 11 chr4 92256832 92257187 -110071160 - L1ME3A LINE L1 -116 6054 5625 470 125 12 0 chr4 92257291 92257371 -110070976 + (TCCC)n Simple_repeat Simple_repeat 4 84 0 5521 63 7 0 chr4 92257702 92258403 -110069944 + L1PA7 LINE L1 5449 6154 0 2253 183 23 28 chr4 92259029 92259596 -110068751 - L1MA8 LINE L1 -3 6288 5725 1691 158 53 26 chr4 92259812 92259929 -110068418 + AluJb SINE Alu 1 113 -199 300 27 0 0 chr4 92259929 92259966 -110068381 + (CA)n Simple_repeat Simple_repeat 2 38 0 1691 158 53 26 chr4 92259966 92260152 -110068195 + AluJb SINE Alu 113 312 0 1052 88 11 22 chr4 92260163 92260345 -110068002 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 291 140 0 0 chr4 92260355 92260405 -110067942 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 339 335 101 13 chr4 92260531 92260813 -110067534 - L2 LINE L2 -245 3068 2719 370 318 109 10 chr4 92260863 92261064 -110067283 - LTR33 LTR ERVL 0 521 301 338 210 194 0 chr4 92261166 92261290 -110067057 - LTR33 LTR ERVL -373 148 1 775 300 94 32 chr4 92261487 92262041 -110066306 - ERVL LTR ERVL -396 5368 4781 658 58 0 0 chr4 92262114 92262201 -110066146 - HERVH LTR ERV1 -3139 4574 4488 3186 117 0 6 chr4 92262203 92262708 -110065639 - HERVH LTR ERV1 -3720 3993 3492 856 147 7 0 chr4 92262698 92262848 -110065499 - HERVH LTR ERV1 -4423 3290 3140 * 19503 88 10 21 chr4 92262827 92265855 -110062492 - HERVH LTR ERV1 -4718 2995 1 3633 40 2 7 chr4 92265857 92266307 -110062040 - LTR7 LTR ERV1 -2 448 1 186 359 100 12 chr4 92267995 92268165 -110060182 - L2 LINE L2 -4 3309 3125 538 272 40 64 chr4 92269429 92269631 -110058716 - MIR SINE MIR -35 227 31 548 294 141 41 chr4 92269869 92270281 -110058066 + L3 LINE CR1 920 1372 -205 224 279 51 0 chr4 92270616 92270695 -110057652 + L2 LINE L2 2577 2659 -655 222 37 0 0 chr4 92272056 92272083 -110056264 + (GA)n Simple_repeat Simple_repeat 2 28 0 28 29 0 0 chr4 92272391 92272426 -110055921 + AT_rich Low_complexity Low_complexity 1 35 0 549 236 170 0 chr4 92275483 92275648 -110052699 - MIR SINE MIR -68 194 2 329 289 8 31 chr4 92275664 92275792 -110052555 + (TATATG)n Simple_repeat Simple_repeat 2 126 0 408 99 127 0 chr4 92278003 92278074 -110050273 + MADE1 DNA Mariner 1 80 0 228 337 33 11 chr4 92278181 92278273 -110050074 - MER5B DNA MER1_type -83 95 2 1941 154 0 3 chr4 92278466 92278764 -110049583 + AluSx SINE Alu 1 297 -15 1938 34 0 0 chr4 92279119 92279353 -110048994 + L1PA2 LINE L1 5922 6155 0 28 48 0 0 chr4 92279799 92279841 -110048506 + AT_rich Low_complexity Low_complexity 1 42 0 259 247 47 0 chr4 92279989 92280074 -110048273 - L1MC/D LINE L1 -2010 5798 5710 * 280 284 17 68 chr4 92280043 92280081 -110048266 - L1ME LINE L1 -262 5859 5821 332 64 0 0 chr4 92280081 92280128 -110048219 - L1MA9 LINE L1 0 6312 6266 280 284 17 68 chr4 92280128 92280312 -110048035 - L1ME LINE L1 -300 5821 5635 386 301 75 20 chr4 92280500 92280646 -110047701 - MER5B DNA MER1_type -24 154 1 22 0 0 0 chr4 92280805 92280827 -110047520 + AT_rich Low_complexity Low_complexity 1 22 0 496 274 22 30 chr4 92281154 92281289 -110047058 - L3 LINE CR1 -18 1559 1426 314 355 24 8 chr4 92281433 92281557 -110046790 - L3 LINE CR1 -496 1081 956 373 253 118 56 chr4 92281795 92281973 -110046374 - L3 LINE CR1 -820 757 569 2223 4 0 0 chr4 92281973 92282212 -110046135 - AluYb8 SINE Alu -13 305 67 435 298 27 58 chr4 92283521 92283746 -110044601 - L2 LINE L2 -245 3068 2851 256 226 65 32 chr4 92284398 92284491 -110043856 - L2 LINE L2 -66 3247 3152 1681 163 14 14 chr4 92284495 92284777 -110043570 + AluJo SINE Alu 1 282 -30 206 152 0 22 chr4 92284777 92284823 -110043524 + CT-rich Low_complexity Low_complexity 2 46 0 1594 135 43 29 chr4 92286087 92286368 -110041979 + AluJb SINE Alu 21 305 -7 1860 154 20 66 chr4 92286921 92287329 -110041018 - MLT1B LTR MaLR -1 389 1 1775 146 0 18 chr4 92287478 92287758 -110040589 - AluJb SINE Alu -13 299 25 304 278 127 40 chr4 92288235 92288408 -110039939 - MIR SINE MIR -21 241 54 550 228 39 0 chr4 92289498 92289625 -110038722 - MIR SINE MIR -78 184 53 1638 184 0 30 chr4 92289920 92290225 -110038122 - AluJb SINE Alu -16 296 1 508 284 37 6 chr4 92291179 92291341 -110037006 + MIR SINE MIR 95 261 -1 1330 170 37 89 chr4 92291374 92291757 -110036590 + MLT1A1 LTR MaLR 1 363 -2 903 204 35 118 chr4 92291805 92292143 -110036204 + MLT1G1 LTR MaLR 1 310 -285 266 311 11 0 chr4 92292217 92292307 -110036040 + MLT1G1 LTR MaLR 370 460 -82 2411 55 0 0 chr4 92292660 92292952 -110035395 + AluY SINE Alu 1 292 -19 243 0 0 0 chr4 92293773 92293800 -110034547 + (CA)n Simple_repeat Simple_repeat 1 27 0 1036 289 108 31 chr4 92293856 92294377 -110033970 + L2 LINE L2 2756 3313 0 230 163 0 0 chr4 92294434 92294483 -110033864 - L1MA9 LINE L1 -35 6277 6229 211 353 133 0 chr4 92294661 92294811 -110033536 - L2 LINE L2 0 3272 3103 1311 217 83 23 chr4 92294873 92295260 -110033087 - MER63B DNA MER1_type -26 410 1 24 32 0 0 chr4 92295749 92295780 -110032567 + AT_rich Low_complexity Low_complexity 1 31 0 380 119 0 0 chr4 92295780 92295839 -110032508 - L1PA5 LINE L1 -8 6146 6088 6277 100 10 23 chr4 92295899 92297244 -110031103 - L1P3 LINE L1 -4289 2172 839 1842 141 32 0 chr4 92298060 92298343 -110030004 + AluJb SINE Alu 5 296 -16 360 0 0 0 chr4 92298447 92298487 -110029860 + (T)n Simple_repeat Simple_repeat 1 40 0 194 226 0 0 chr4 92298762 92298793 -110029554 + MIR SINE MIR 88 118 -90 25 0 0 0 chr4 92299887 92299912 -110028435 + AT_rich Low_complexity Low_complexity 1 25 0 991 293 140 35 chr4 92299928 92301158 -110027189 + MERVL LTR ERVL 2447 3778 -1707 1159 258 56 23 chr4 92301207 92301602 -110026745 + MERVL LTR ERVL 3901 4308 -1456 2491 128 3 3 chr4 92301692 92302076 -110026271 + HERVH LTR ERV1 4566 4949 -2764 302 98 20 0 chr4 92302179 92302230 -110026117 + (TCC)n Simple_repeat Simple_repeat 2 53 0 245 313 91 0 chr4 92302253 92302352 -110025995 - MLT1L LTR MaLR -221 394 287 237 161 36 18 chr4 92302373 92302429 -110025918 - MLT1J LTR MaLR -343 168 112 2083 84 17 9 chr4 92302773 92303166 -110025181 - LTR7 LTR ERV1 -8 442 1 232 345 36 0 chr4 92304260 92304344 -110024003 - L3 LINE CR1 -65 1512 1426 632 267 75 5 chr4 92304352 92304539 -110023808 + MIR SINE MIR 5 204 -58 222 171 0 0 chr4 92304539 92304580 -110023767 + (CATA)n Simple_repeat Simple_repeat 3 43 0 411 315 70 21 chr4 92304939 92305180 -110023167 + MLT1K LTR MaLR 102 354 -234 921 318 94 16 chr4 92305213 92305713 -110022634 + LTR67 LTR ERVL 6 544 -13 550 244 30 18 chr4 92305733 92305901 -110022446 + MLT1K LTR MaLR 394 563 -25 383 188 0 0 chr4 92305910 92305979 -110022368 - Tigger5 DNA MER2_type 0 2323 2255 401 164 0 0 chr4 92305983 92306050 -110022297 + Tigger5 DNA MER2_type 2251 2317 -6 393 195 13 0 chr4 92306052 92306129 -110022218 - Tigger5 DNA MER2_type -2244 79 2 30 45 0 0 chr4 92307330 92307374 -110020973 + AT_rich Low_complexity Low_complexity 1 44 0 289 331 65 50 chr4 92307534 92307673 -110020674 + MIR3 SINE MIR 20 160 -48 184 306 42 42 chr4 92307673 92307745 -110020602 + MER5C DNA MER1_type 1 72 -252 604 209 0 0 chr4 92310030 92310135 -110018212 - MER81 DNA DNA 0 114 10 1318 216 108 32 chr4 92310268 92310676 -110017671 + MLT1D LTR MaLR 1 439 -66 556 40 0 0 chr4 92310689 92310765 -110017582 - AluY SINE Alu -4 306 231 1518 91 0 0 chr4 92310765 92310962 -110017385 - AluYb8 SINE Alu -121 197 1 338 177 0 0 chr4 92310966 92311028 -110017319 + MLT1D LTR MaLR 444 505 0 246 334 143 48 chr4 92311039 92311584 -110016763 - L2 LINE L2 -338 2976 2380 455 165 186 0 chr4 92311759 92311856 -110016491 + FLAM_C SINE Alu 1 115 -28 320 314 66 7 chr4 92312036 92312173 -110016174 + L2 LINE L2 3161 3305 -8 1268 204 48 74 chr4 92312626 92312666 -110015681 + MLT1C LTR MaLR 56 96 -371 2100 129 7 0 chr4 92312666 92312960 -110015387 - AluSp SINE Alu -16 297 2 1268 204 48 74 chr4 92312960 92313340 -110015007 + MLT1C LTR MaLR 96 465 -2 22 70 0 0 chr4 92314148 92314191 -110014156 + AT_rich Low_complexity Low_complexity 1 43 0 1243 188 31 0 chr4 92314651 92314875 -110013472 + AluJb SINE Alu 1 231 -81 387 313 74 56 chr4 92314891 92315102 -110013245 - MARNA DNA Mariner -75 511 305 1996 141 31 0 chr4 92315102 92315392 -110012955 + AluSx SINE Alu 2 300 -12 387 313 74 56 chr4 92315392 92315678 -110012669 - MARNA DNA Mariner -281 305 5 454 333 4 13 chr4 92316998 92317226 -110011121 + MARNA DNA Mariner 348 573 -13 2176 122 0 13 chr4 92317328 92317640 -110010707 + AluSx SINE Alu 1 308 -4 183 224 47 47 chr4 92320817 92320902 -110007445 - L2 LINE L2 -1634 1680 1596 2408 88 0 0 chr4 92321091 92321397 -110006950 - AluY SINE Alu -5 306 1 226 0 0 0 chr4 92321481 92321506 -110006841 + (TTTA)n Simple_repeat Simple_repeat 4 148 0 2021 154 0 0 chr4 92321506 92321800 -110006547 - AluJb SINE Alu -1 318 1 325 331 23 15 chr4 92321949 92322082 -110006265 + MIR SINE MIR 24 157 -105 654 233 24 68 chr4 92322705 92322911 -110005436 - MIR SINE MIR -54 208 12 591 325 32 0 chr4 92322947 92323135 -110005212 - MIR SINE MIR -13 249 56 698 210 168 73 chr4 92323692 92324073 -110004274 + L1ME3 LINE L1 5672 6088 -74 23 33 0 0 chr4 92325157 92325187 -110003160 + AT_rich Low_complexity Low_complexity 1 30 0 212 143 0 41 chr4 92325444 92325475 -110002872 + (TTTTTA)n Simple_repeat Simple_repeat 6 36 -16 6675 68 5 0 chr4 92325475 92326614 -110001733 - L1PA8A LINE L1 -2 6129 4992 212 143 0 41 chr4 92326614 92326631 -110001716 + (TTTTTA)n Simple_repeat Simple_repeat 36 52 0 1667 177 71 122 chr4 92328400 92329102 -109999245 + MER4A LTR ERV1 1 872 0 474 199 260 56 chr4 92330014 92330210 -109998137 - MER106A DNA MER1_type 0 236 1 621 202 148 72 chr4 92331046 92331513 -109996834 + LTR48 LTR ERV1 157 628 -16 2193 114 0 10 chr4 92331534 92331832 -109996515 - AluSq SINE Alu -18 295 1 25 51 0 0 chr4 92331968 92332007 -109996340 + AT_rich Low_complexity Low_complexity 1 39 0 2447 91 0 0 chr4 92333307 92333614 -109994733 - AluSg SINE Alu -3 307 1 252 216 0 0 chr4 92333863 92333914 -109994433 + L3 LINE CR1 909 959 -618 287 265 99 7 chr4 92334003 92334154 -109994193 + L3 LINE CR1 1178 1342 -235 29 84 0 0 chr4 92335566 92335637 -109992710 + AT_rich Low_complexity Low_complexity 1 71 0 438 325 21 28 chr4 92335700 92335983 -109992364 - L1MC4a LINE L1 -1953 5855 5575 498 205 35 64 chr4 92336334 92336505 -109991842 + L1MC5 LINE L1 7160 7325 -636 1273 189 104 28 chr4 92336555 92336638 -109991709 + L1MC5 LINE L1 7452 7527 -434 2259 162 42 26 chr4 92336638 92337065 -109991282 - Tigger2a DNA MER2_type 0 434 1 1273 189 104 28 chr4 92337065 92337414 -109990933 + L1MC5 LINE L1 7527 7917 -44 241 172 195 35 chr4 92338535 92338622 -109989725 - MER103 DNA DNA -50 116 16 4969 215 93 51 chr4 92338795 92339138 -109989209 + L1MDa LINE L1 3 330 -6210 1809 166 0 29 chr4 92339138 92339445 -109988902 - AluJb SINE Alu -14 298 1 4969 215 93 51 chr4 92339445 92340624 -109987723 + L1MDa LINE L1 330 1588 -4952 304 286 194 0 chr4 92341242 92341340 -109987007 + L2 LINE L2 3155 3271 -1 285 274 12 0 chr4 92341340 92341424 -109986923 + GA-rich Low_complexity Low_complexity 4 88 0 23 33 0 0 chr4 92341613 92341643 -109986704 + AT_rich Low_complexity Low_complexity 1 30 0 222 37 0 0 chr4 92341749 92341776 -109986571 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 431 158 49 0 chr4 92341776 92341858 -109986489 + L1MDa LINE L1 1592 1677 -4863 329 277 17 17 chr4 92341906 92342083 -109986264 + (TA)n Simple_repeat Simple_repeat 1 177 0 453 359 15 36 chr4 92342243 92342438 -109985909 - MIR SINE MIR -71 191 1 232 301 131 17 chr4 92342532 92342651 -109985696 - MIR SINE MIR -28 180 35 779 271 26 15 chr4 92343146 92343389 -109984958 - MIR SINE MIR -3 205 10 662 279 132 5 chr4 92343450 92343654 -109984693 - MIR SINE MIR 0 262 33 26 0 0 0 chr4 92343661 92343687 -109984660 + AT_rich Low_complexity Low_complexity 1 26 0 1408 69 128 0 chr4 92343773 92343977 -109984370 + L1PA11 LINE L1 5942 6171 -3 736 142 24 8 chr4 92343992 92344119 -109984228 + FLAM_C SINE Alu 1 129 -14 458 194 0 10 chr4 92344121 92344224 -109984123 + GA-rich Low_complexity Low_complexity 3 104 0 928 157 61 0 chr4 92344279 92344426 -109983921 - AluSg/x SINE Alu -20 292 137 186 343 78 0 chr4 92345816 92345918 -109982429 + MIR SINE MIR 100 209 -53 2011 148 120 30 chr4 92345927 92346146 -109982201 - MSTA LTR MaLR 0 428 230 2188 113 0 3 chr4 92346146 92346448 -109981899 - AluSq SINE Alu -12 301 1 2011 148 120 30 chr4 92346448 92346621 -109981726 - MSTA LTR MaLR -198 230 1 462 261 24 101 chr4 92350419 92350626 -109977721 + MIR SINE MIR 48 238 -24 515 251 30 36 chr4 92350650 92350817 -109977530 - MIR SINE MIR -37 225 60 330 261 72 9 chr4 92350827 92350938 -109977409 + MIR SINE MIR 126 243 -19 10735 103 5 122 chr4 92351005 92351317 -109977030 + L1P LINE L1 3126 3473 -2673 6252 111 47 28 chr4 92351317 92352366 -109975981 - MER11C LTR ERVK -2 1069 1 10735 103 5 122 chr4 92352366 92352405 -109975942 + L1P LINE L1 3473 3515 -2631 633 93 8 108 chr4 92352405 92352534 -109975813 + MER11B LTR ERVK 1121 1236 0 10735 103 5 122 chr4 92352534 92354183 -109974164 + L1P LINE L1 3515 5006 -1140 287 281 7 20 chr4 92354957 92355103 -109973244 + GA-rich Low_complexity Low_complexity 1 144 0 1745 186 32 22 chr4 92356274 92356644 -109971703 + MLT1A2 LTR MaLR 1 374 0 658 138 81 8 chr4 92356833 92356956 -109971391 + MER106B DNA MER1_type 3 134 -925 761 336 119 48 chr4 92357448 92358974 -109969373 - L2 LINE L2 -3 3269 1611 4826 174 21 7 chr4 92360318 92360740 -109967607 + L1MB1 LINE L1 5186 5601 -567 2274 109 54 6 chr4 92360740 92361089 -109967258 - MER47A DNA MER2_type 0 366 1 4826 174 21 7 chr4 92361089 92361637 -109966710 + L1MB1 LINE L1 5601 6167 -1 211 350 72 39 chr4 92361729 92361909 -109966438 - L2 LINE L2 -640 2674 2489 622 224 142 80 chr4 92362350 92362947 -109965400 - L1MC5 LINE L1 -53 7908 7275 276 306 105 40 chr4 92362987 92363111 -109965236 - MIR SINE MIR -57 151 20 238 362 158 36 chr4 92363190 92363607 -109964740 + L2 LINE L2 2413 2880 -434 375 336 29 15 chr4 92363650 92363787 -109964560 + MIR SINE MIR 12 150 -112 22729 26 0 0 chr4 92364479 92367964 -109960383 + L1PA3 LINE L1 2666 6153 -2 28 48 0 0 chr4 92370419 92370461 -109957886 + AT_rich Low_complexity Low_complexity 1 42 0 453 90 0 0 chr4 92370869 92370936 -109957411 + (CA)n Simple_repeat Simple_repeat 1 67 0 1540 196 63 0 chr4 92371047 92371333 -109957014 - AluJb SINE Alu -6 306 3 21 36 0 0 chr4 92373547 92373575 -109954772 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr4 92374725 92374763 -109953584 + AT_rich Low_complexity Low_complexity 1 38 0 231 350 98 14 chr4 92375054 92375197 -109953150 + MIR3 SINE MIR 46 200 -8 2126 145 0 0 chr4 92376129 92376433 -109951914 + AluSx SINE Alu 9 312 0 2434 71 0 0 chr4 92377583 92377877 -109950470 - AluY SINE Alu -15 296 3 1768 224 113 26 chr4 92377890 92378554 -109949793 - L1ME3A LINE L1 -9 6161 5440 2085 117 30 0 chr4 92379348 92379646 -109948701 + AluSc SINE Alu 1 307 -2 195 218 0 0 chr4 92380805 92380860 -109947487 + GA-rich Low_complexity Low_complexity 1 55 0 573 111 12 146 chr4 92382052 92382223 -109946124 - MER53 DNA DNA 0 189 42 2108 110 0 14 chr4 92382236 92382526 -109945821 - AluSx SINE Alu -26 286 1 13618 192 42 26 chr4 92383027 92383378 -109944969 - L1PB1 LINE L1 -4 6863 6519 495 0 0 0 chr4 92383378 92383433 -109944914 + (TA)n Simple_repeat Simple_repeat 2 56 0 13618 192 42 26 chr4 92383433 92389682 -109938665 - L1PB1 LINE L1 -348 6519 6 351 0 0 0 chr4 92389692 92389731 -109938616 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2017 143 0 0 chr4 92389733 92390013 -109938334 - AluSx SINE Alu -32 280 1 275 220 110 10 chr4 92390027 92390127 -109938220 - L1MC4 LINE L1 0 8042 7933 2246 85 3 3 chr4 92390141 92390423 -109937924 - AluSg SINE Alu -23 287 6 369 286 89 6 chr4 92390482 92390650 -109937697 + LTR16C LTR ERVL 307 488 -3 701 325 43 68 chr4 92391922 92392408 -109935939 - REP3 LTR ERV -85 477 4 287 237 0 0 chr4 92393563 92393622 -109934725 - MER58A DNA MER1_type 0 224 166 1017 188 12 0 chr4 92393849 92394019 -109934328 - MER58A DNA MER1_type -50 174 3 4552 206 39 19 chr4 92494189 92494393 -109833954 - L1 LINE L1 -2910 3236 3038 2516 84 0 0 chr4 92494393 92494704 -109833643 - AluY SINE Alu 0 311 1 4552 206 39 19 chr4 92494704 92495589 -109832758 - L1 LINE L1 -3108 3038 2125 2165 105 7 3 chr4 92496042 92496338 -109832009 - AluSg SINE Alu -13 297 1 338 286 13 0 chr4 92496902 92496979 -109831368 + MER58 DNA MER1_type 1 78 -308 543 172 45 52 chr4 92496979 92497113 -109831234 - FRAM SINE Alu -1 175 43 1853 119 0 0 chr4 92497223 92497491 -109830856 + AluSx SINE Alu 39 306 0 24 0 0 0 chr4 92497705 92497729 -109830618 + AT_rich Low_complexity Low_complexity 1 24 0 38 61 0 0 chr4 92498107 92498173 -109830174 + AT_rich Low_complexity Low_complexity 1 66 0 2352 88 0 3 chr4 92498217 92498511 -109829836 + AluSx SINE Alu 1 293 -19 2130 127 3 19 chr4 92498511 92498827 -109829520 + AluSx SINE Alu 1 311 -1 1274 249 63 10 chr4 92498837 92499024 -109829323 - L1MB8 LINE L1 -6 6172 5996 1758 139 0 36 chr4 92499024 92499305 -109829042 - AluSx SINE Alu -5 307 37 1274 249 63 10 chr4 92499305 92499530 -109828817 - L1MB8 LINE L1 -182 5996 5738 1808 218 121 62 chr4 92499749 92499988 -109828359 + L1MC4 LINE L1 6660 6883 -1159 1480 182 4 0 chr4 92499988 92500235 -109828112 + AluJo SINE Alu 43 290 -22 1808 218 121 62 chr4 92500235 92500255 -109828092 + L1MC4 LINE L1 6883 6900 -1142 2054 108 18 4 chr4 92500255 92500584 -109827763 + AluSq SINE Alu 1 333 0 1808 218 121 62 chr4 92500584 92501018 -109827329 + L1MC4 LINE L1 6900 7396 -646 366 261 37 64 chr4 92501175 92501363 -109826984 + L1MC4 LINE L1 7794 7976 -66 1406 202 51 20 chr4 92501394 92501686 -109826661 + AluJo SINE Alu 1 301 -11 977 178 0 0 chr4 92502568 92502725 -109825622 + FRAM SINE Alu 1 157 -9 4181 158 14 11 chr4 92502955 92503653 -109824694 - MER50 LTR ERV1 -23 711 12 189 273 227 52 chr4 92503657 92503851 -109824496 + MIR SINE MIR 26 253 -9 2844 188 16 40 chr4 92504221 92504826 -109823521 + L1MCa LINE L1 373 963 -5463 1650 157 0 25 chr4 92504842 92505128 -109823219 + AluJb SINE Alu 29 307 -5 825 213 12 0 chr4 92505133 92505293 -109823054 + FRAM SINE Alu 1 156 -20 1611 117 17 0 chr4 92505296 92505527 -109822820 + AluSg/x SINE Alu 67 301 -11 2168 100 31 3 chr4 92505539 92505829 -109822518 + AluSx SINE Alu 1 298 -14 1156 212 0 0 chr4 92505831 92506043 -109822304 + AluJo SINE Alu 1 212 -100 1716 107 0 53 chr4 92506143 92506224 -109822123 + AluSx SINE Alu 64 148 -164 2550 52 0 0 chr4 92506224 92506529 -109821818 + AluYa5 SINE Alu 1 305 -6 1716 107 0 53 chr4 92506529 92506709 -109821638 + AluSx SINE Alu 148 311 -1 2340 94 3 35 chr4 92506709 92506917 -109821430 + L1MA3 LINE L1 5978 6172 -133 2258 117 0 0 chr4 92506917 92507217 -109821130 + AluSx SINE Alu 1 300 -12 2340 94 3 35 chr4 92507217 92507347 -109821000 + L1MA3 LINE L1 6172 6305 0 227 326 42 0 chr4 92507513 92507608 -109820739 + MER20B DNA MER1_type 43 141 -642 2853 225 24 58 chr4 92507619 92507973 -109820374 - L1M4 LINE L1 -1042 5104 4739 690 175 79 32 chr4 92507973 92508099 -109820248 - FLAM_C SINE Alu -1 132 1 2853 225 24 58 chr4 92508099 92508324 -109820023 - L1M4 LINE L1 -1407 4739 4558 1879 150 3 3 chr4 92508324 92508617 -109819730 + AluJb SINE Alu 7 299 -13 2853 225 24 58 chr4 92508617 92508846 -109819501 - L1M4 LINE L1 -1588 4558 4323 1345 183 43 0 chr4 92508871 92509151 -109819196 + AluJo SINE Alu 44 333 0 1544 210 54 11 chr4 92509151 92509523 -109818824 - L1M4 LINE L1 -1816 4330 3943 484 129 47 0 chr4 92510255 92510340 -109818007 + L1M4 LINE L1 5182 5270 -876 21 0 0 0 chr4 92510403 92510424 -109817923 + AT_rich Low_complexity Low_complexity 1 21 0 389 138 35 46 chr4 92510450 92510537 -109817810 + L1M4 LINE L1 5245 5330 -816 1506 82 0 44 chr4 92510541 92510747 -109817600 + AluY SINE Alu 1 197 -114 782 122 0 17 chr4 92510860 92510975 -109817372 - AluSq/x SINE Alu -195 117 5 10850 156 15 19 chr4 92510980 92511190 -109817157 - L1MA3 LINE L1 -118 6182 5973 2110 111 0 44 chr4 92511190 92511369 -109816978 - AluSx SINE Alu -2 310 149 2876 3 0 0 chr4 92511369 92511674 -109816673 - AluYa5 SINE Alu -6 305 1 2110 111 0 44 chr4 92511674 92511809 -109816538 - AluSx SINE Alu -163 149 10 10850 156 15 19 chr4 92511809 92511843 -109816504 - L1MA3 LINE L1 -327 5973 5940 728 174 35 9 chr4 92511843 92511958 -109816389 - FLAM_C SINE Alu -15 118 1 10850 156 15 19 chr4 92511958 92512935 -109815412 - L1MA3 LINE L1 -360 5940 4961 2096 120 7 3 chr4 92512935 92513227 -109815120 - AluSq SINE Alu -16 297 5 10850 156 15 19 chr4 92513227 92514895 -109813452 - L1MA3 LINE L1 -1339 4961 3335 2381 99 0 3 chr4 92515941 92516254 -109812093 - AluSq SINE Alu 0 313 2 431 234 49 102 chr4 92517080 92517156 -109811191 - L2 LINE L2 -557 2757 2678 1997 148 17 0 chr4 92517156 92517447 -109810900 + AluSx SINE Alu 1 296 -16 431 234 49 102 chr4 92517447 92517575 -109810772 - L2 LINE L2 -636 2678 2564 2127 127 3 3 chr4 92517892 92518192 -109810155 - AluSx SINE Alu -12 300 1 827 199 23 11 chr4 92518214 92518390 -109809957 + AluJb SINE Alu 130 307 -5 657 181 9 4 chr4 92518397 92518628 -109809719 + GA-rich Low_complexity Low_complexity 1 232 0 551 158 105 0 chr4 92518705 92518800 -109809547 + FLAM_A SINE Alu 18 122 -20 326 182 18 0 chr4 92519597 92519652 -109808695 + Tigger2 DNA MER2_type 1 56 -2662 576 202 0 0 chr4 92519656 92519755 -109808592 - MER8 DNA MER2_type -96 143 45 522 232 184 0 chr4 92520260 92520428 -109807919 - L1ME1 LINE L1 -27 6139 5941 1067 164 10 29 chr4 92520534 92520742 -109807605 + AluJo SINE Alu 109 312 0 192 315 54 54 chr4 92520970 92521062 -109807285 + MIR SINE MIR 51 142 -66 2280 90 3 0 chr4 92521068 92521356 -109806991 + AluSp SINE Alu 1 289 -24 294 184 122 92 chr4 92521372 92521470 -109806877 - L2 LINE L2 -17 3296 3196 1770 156 0 7 chr4 92521531 92521801 -109806546 + AluSx SINE Alu 1 268 -44 574 248 163 50 chr4 92521852 92522060 -109806287 - L2 LINE L2 -378 2936 2678 1391 94 139 0 chr4 92522060 92522262 -109806085 + MER30 DNA MER1_type 1 230 0 574 248 163 50 chr4 92522262 92522372 -109805975 - L2 LINE L2 -636 2678 2582 2438 63 0 3 chr4 92522955 92523255 -109805092 + AluY SINE Alu 1 299 -12 2786 80 119 5 chr4 92523825 92524227 -109804120 - LTR7 LTR ERV1 -2 448 1 2524 80 48 13 chr4 92524227 92524604 -109803743 - HERVH LTR ERV1 0 7713 7324 1370 126 23 0 chr4 92524604 92524819 -109803528 - HERVH LTR ERV1 -1894 5819 5600 5502 122 6 0 chr4 92524820 92525600 -109802747 - HERVH LTR ERV1 -2564 5149 4365 6005 129 12 9 chr4 92525700 92526586 -109801761 + L1MA2 LINE L1 4931 5829 -475 2039 96 54 0 chr4 92526586 92526866 -109801481 + AluY SINE Alu 1 295 -16 6005 129 12 9 chr4 92526866 92527171 -109801176 + L1MA2 LINE L1 5829 6131 -173 1073 136 0 75 chr4 92527171 92527340 -109801007 + AluSg/x SINE Alu 120 300 -12 210 37 0 0 chr4 92527340 92527367 -109800980 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1213 92 25 0 chr4 92527370 92527533 -109800814 + L1MA3 LINE L1 6139 6305 0 1073 136 0 75 chr4 92527533 92527558 -109800789 + AluSg/x SINE Alu 278 303 -9 852 181 48 0 chr4 92527566 92527732 -109800615 + L1MB4 LINE L1 6005 6178 -2 194 289 21 62 chr4 92527789 92527886 -109800461 - L2 LINE L2 -1 3271 3179 323 164 2 0 chr4 92528108 92528167 -109800180 + Alu SINE Alu 248 299 -3 842 167 0 0 chr4 92528167 92528293 -109800054 + FLAM_C SINE Alu 1 126 -17 297 0 0 0 chr4 92528293 92528326 -109800021 + (CA)n Simple_repeat Simple_repeat 2 34 0 207 0 0 0 chr4 92528325 92528348 -109799999 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 260 228 316 0 chr4 92529324 92529460 -109798887 - MER5A DNA MER1_type -2 187 9 242 33 0 0 chr4 92529845 92529875 -109798472 + Alu SINE Alu 258 287 -14 192 185 0 0 chr4 92529875 92529929 -109798418 + (TA)n Simple_repeat Simple_repeat 1 54 0 2042 128 0 4 chr4 92529930 92530242 -109798105 + AluSq SINE Alu 4 314 0 988 119 0 0 chr4 92530738 92530864 -109797483 - FLAM_C SINE Alu -7 126 1 680 167 0 0 chr4 92530982 92531084 -109797263 - LTR12 LTR ERV1 0 714 613 355 265 26 0 chr4 92531084 92531201 -109797146 - LTR30 LTR ERV1 -79 643 524 1429 135 385 3 chr4 92531201 92531528 -109796819 - pTR5 LTR ERV1 -432 2006 1555 258 250 0 0 chr4 92531528 92531580 -109796767 - LTR30 LTR ERV1 -670 52 1 311 291 52 48 chr4 92532120 92532330 -109796017 - MIR SINE MIR -42 220 16 622 296 17 6 chr4 92532533 92532712 -109795635 - MER5A DNA MER1_type -1 188 8 1879 115 7 15 chr4 92532797 92533094 -109795253 - AluSq SINE Alu 0 311 17 1550 187 42 0 chr4 92533096 92533379 -109794968 - AluJb SINE Alu -5 307 13 724 119 30 0 chr4 92533393 92533494 -109794853 - U6 snRNA snRNA -2 105 2 721 199 26 13 chr4 92533523 92533679 -109794668 + MIR SINE MIR 38 195 -67 476 366 37 16 chr4 92533897 92534128 -109794219 - L2 LINE L2 -500 2814 2576 2285 102 40 62 chr4 92534128 92534500 -109793847 + THE1B LTR MaLR 1 364 0 476 366 37 16 chr4 92534500 92534514 -109793833 - L2 LINE L2 -738 2576 2564 207 250 0 0 chr4 92534653 92534697 -109793650 + L2 LINE L2 3267 3310 -3 210 276 100 59 chr4 92534712 92534853 -109793494 + L2 LINE L2 2779 2930 -384 1167 200 18 27 chr4 92534853 92535078 -109793269 + MER58A DNA MER1_type 2 224 0 210 276 100 59 chr4 92535078 92535106 -109793241 + L2 LINE L2 2930 2955 -359 2132 169 50 12 chr4 92535106 92535526 -109792821 + L1MB3 LINE L1 4727 5162 -984 1200 142 0 0 chr4 92535562 92535731 -109792616 + AluJb SINE Alu 134 302 -10 1637 163 48 10 chr4 92535764 92536053 -109792294 - AluJb SINE Alu -12 300 1 1255 146 56 7 chr4 92536054 92536349 -109791998 + L1MB3 LINE L1 5178 5490 -690 2826 96 22 3 chr4 92536557 92536923 -109791424 - THE1C LTR MaLR 0 375 3 10130 105 33 49 chr4 92536925 92537547 -109790800 - THE1C-int LTR MaLR 0 1580 950 2105 108 96 35 chr4 92537547 92537890 -109790457 - THE1B LTR MaLR 0 364 1 10130 105 33 49 chr4 92537890 92538872 -109789475 - THE1C-int LTR MaLR -630 950 1 2690 97 13 56 chr4 92538872 92538927 -109789420 - THE1C LTR MaLR 0 375 319 1984 153 10 0 chr4 92538927 92539234 -109789113 - AluSq SINE Alu -3 310 1 2690 97 13 56 chr4 92539234 92539570 -109788777 - THE1C LTR MaLR -56 319 1 3620 135 72 2 chr4 92539735 92540344 -109788003 + L1MB3 LINE L1 5480 6131 -52 1640 90 4 37 chr4 92540352 92540597 -109787750 + AluY SINE Alu 21 257 -54 20973 133 28 21 chr4 92540697 92540753 -109787594 - L1M1 LINE L1 -4165 3400 3346 1635 199 0 0 chr4 92540753 92541039 -109787308 - AluJo SINE Alu -26 286 1 20973 133 28 21 chr4 92541039 92541061 -109787286 - L1M1 LINE L1 -4219 3346 3326 2433 85 7 0 chr4 92541061 92541367 -109786980 - AluSg SINE Alu -2 308 1 20973 133 28 21 chr4 92541367 92541697 -109786650 - L1M1 LINE L1 -4239 3326 3000 1314 190 9 83 chr4 92541697 92542034 -109786313 - AluJo SINE Alu 0 312 1 20973 133 28 21 chr4 92542034 92544986 -109783361 - L1M1 LINE L1 -4565 3000 16 477 263 108 36 chr4 92544976 92545083 -109783264 - HAL1b LINE L1 -505 843 745 * 2391 64 6 16 chr4 92545083 92545397 -109782950 - AluY SINE Alu 0 311 1 477 263 108 36 chr4 92545397 92545567 -109782780 - HAL1b LINE L1 -603 745 546 1468 206 7 42 chr4 92545700 92546010 -109782337 + AluJo SINE Alu 5 303 -9 915 165 0 0 chr4 92546193 92546326 -109782021 + FLAM_C SINE Alu 1 133 0 1849 231 79 46 chr4 92546617 92547313 -109781034 + L1MC5 LINE L1 6689 7407 -554 425 108 81 0 chr4 92547352 92547426 -109780921 - MLT1B LTR MaLR 0 390 311 2489 67 3 0 chr4 92547468 92547796 -109780551 + L1PA8 LINE L1 4862 5190 -956 1109 74 7 27 chr4 92547796 92547945 -109780402 + AluSp SINE Alu 1 146 -167 3047 82 15 0 chr4 92547945 92548334 -109780013 + L1PA8 LINE L1 5778 6172 0 841 178 25 0 chr4 92548334 92548491 -109779856 - MLT1B LTR MaLR -229 161 1 293 175 35 126 chr4 92548547 92548638 -109779709 + L1MC5 LINE L1 7521 7596 -365 902 165 0 0 chr4 92548638 92548771 -109779576 - FLAM_C SINE Alu 0 133 1 293 175 35 126 chr4 92548771 92548822 -109779525 + L1MC5 LINE L1 7596 7650 -311 238 212 30 50 chr4 92548870 92548969 -109779378 + L1MC5 LINE L1 7653 7749 -212 * 369 264 92 37 chr4 92548962 92549125 -109779222 + L1MC5 LINE L1 7236 7407 -554 378 255 112 31 chr4 92549177 92549338 -109779009 + L1MC5 LINE L1 7757 7930 -31 254 291 64 21 chr4 92549363 92549504 -109778843 + L1MEd LINE L1 2 148 -5971 338 295 142 65 chr4 92549594 92549855 -109778492 + L1MEd LINE L1 268 548 -5571 26 30 0 0 chr4 92549860 92549893 -109778454 + AT_rich Low_complexity Low_complexity 1 33 0 1907 113 53 3 chr4 92549893 92550177 -109778170 - AluSx SINE Alu -13 299 2 2315 85 7 0 chr4 92550179 92550474 -109777873 - AluSq SINE Alu -16 297 1 955 220 0 12 chr4 92550477 92550650 -109777697 - FAM SINE Alu -4 171 1 234 241 80 9 chr4 92550841 92550953 -109777394 + L1MEd LINE L1 778 897 -5222 2887 91 13 69 chr4 92551204 92551656 -109776691 - L1PA14 LINE L1 0 6161 5735 349 253 47 72 chr4 92551684 92551998 -109776349 - LTR38B LTR ERV1 0 611 302 345 198 5 142 chr4 92552087 92552356 -109775991 - LTR38B LTR ERV1 -362 233 27 2501 77 0 0 chr4 92552358 92552657 -109775690 - AluSx SINE Alu -11 301 3 462 291 51 0 chr4 92552964 92553139 -109775208 + L1ME3A LINE L1 5725 5908 -262 824 111 0 0 chr4 92553144 92553252 -109775095 + AluSg SINE Alu 1 108 -202 2381 89 0 0 chr4 92553420 92553723 -109774624 + AluSc SINE Alu 1 303 -6 466 118 29 0 chr4 92554445 92554513 -109773834 + FLAM SINE Alu 50 119 -24 1576 189 37 17 chr4 92554542 92554838 -109773509 + AluJo SINE Alu 1 302 -10 991 305 58 20 chr4 92555152 92555546 -109772801 - L2 LINE L2 -21 3292 2884 1666 135 76 17 chr4 92555684 92555871 -109772476 - AluJb SINE Alu -7 305 94 4376 186 128 125 chr4 92555871 92557621 -109770726 - MER52A LTR ERV1 0 1755 1 1666 135 76 17 chr4 92557621 92557721 -109770626 - AluJb SINE Alu -218 94 1 183 100 0 0 chr4 92558001 92558031 -109770316 + (TG)n Simple_repeat Simple_repeat 2 31 0 254 308 94 16 chr4 92558033 92558232 -109770115 - L1MB8 LINE L1 -248 5930 5723 1800 224 41 70 chr4 92558312 92558870 -109769477 - MER34 LTR ERV1 0 542 1 2155 126 0 7 chr4 92559476 92559807 -109768540 + AluSx SINE Alu 1 312 0 802 181 0 0 chr4 92559891 92560007 -109768340 + FLAM_A SINE Alu 1 116 -17 1513 179 33 40 chr4 92560213 92560515 -109767832 + AluJo SINE Alu 1 300 -12 22297 178 33 60 chr4 92560519 92565529 -109762818 + L1M1 LINE L1 12 5066 -2499 1286 178 0 17 chr4 92565529 92565765 -109762582 + AluJb SINE Alu 81 312 0 22297 178 33 60 chr4 92565765 92566551 -109761796 + L1M1 LINE L1 5066 5872 -1693 2418 83 3 0 chr4 92566979 92567280 -109761067 + AluY SINE Alu 1 302 -9 24 53 0 0 chr4 92570779 92570817 -109757530 + AT_rich Low_complexity Low_complexity 1 38 0 297 238 41 0 chr4 92572264 92572386 -109755961 + (TA)n Simple_repeat Simple_repeat 1 127 0 443 48 0 16 chr4 92572401 92572464 -109755883 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 1484 179 57 10 chr4 92572584 92572881 -109755466 + AluJo SINE Alu 1 311 -1 875 186 49 59 chr4 92573903 92573975 -109754372 + AluJb SINE Alu 85 156 -167 2196 99 0 23 chr4 92573975 92574278 -109754069 + AluSx SINE Alu 3 298 -14 875 186 49 59 chr4 92574278 92574446 -109753901 + AluJb SINE Alu 156 323 0 332 285 88 35 chr4 92574548 92574776 -109753571 + L2 LINE L2 1838 2077 -1237 368 123 0 14 chr4 92574792 92574865 -109753482 + L1MA8 LINE L1 6220 6291 0 1383 202 46 38 chr4 92575295 92575662 -109752685 + MLT1A2 LTR MaLR 1 505 0 2349 94 0 7 chr4 92576071 92576380 -109751967 + AluSg SINE Alu 1 307 -3 750 259 0 24 chr4 92576663 92576833 -109751514 - FRAM SINE Alu 0 166 1 2917 177 83 26 chr4 92577202 92577853 -109750494 - L1MA7 LINE L1 -4 6287 5600 938 192 0 23 chr4 92578253 92578430 -109749917 + L1PA8 LINE L1 5993 6165 -7 624 179 0 0 chr4 92578461 92578556 -109749791 + FRAM SINE Alu 65 159 -17 1242 173 12 16 chr4 92579417 92579665 -109748682 + L1MB3 LINE L1 5111 5357 -789 1183 181 19 5 chr4 92579671 92579887 -109748460 + L1MB3 LINE L1 5462 5680 -503 1175 124 0 12 chr4 92579889 92580058 -109748289 - AluJo SINE Alu -10 302 136 2429 162 30 12 chr4 92580060 92580491 -109747856 + L1MB3 LINE L1 5676 6114 -69 25 0 0 0 chr4 92581277 92581302 -109747045 + AT_rich Low_complexity Low_complexity 1 25 0 943 119 6 63 chr4 92581767 92581926 -109746421 + AluSq/x SINE Alu 1 150 -162 369 168 32 11 chr4 92582064 92582159 -109746188 + MER58B DNA MER1_type 98 194 -147 643 187 8 60 chr4 92582173 92582195 -109746152 - AluJo SINE Alu -175 127 105 2105 116 0 3 chr4 92582195 92582489 -109745858 + AluSx SINE Alu 1 293 -19 643 187 8 60 chr4 92582489 92582600 -109745747 - AluJo SINE Alu -197 105 1 713 224 7 7 chr4 92582613 92582756 -109745591 + MER58B DNA MER1_type 184 326 -15 278 239 42 56 chr4 92583228 92583370 -109744977 + MARNA DNA Mariner 317 456 -130 201 196 0 0 chr4 92583428 92583474 -109744873 + (TA)n Simple_repeat Simple_repeat 1 46 0 1954 138 17 0 chr4 92583744 92584035 -109744312 + AluJo SINE Alu 1 296 -16 367 252 103 94 chr4 92584255 92584596 -109743751 + L2 LINE L2 2966 3309 -4 1924 155 0 3 chr4 92584763 92585053 -109743294 + AluJo SINE Alu 1 289 -23 2294 104 0 10 chr4 92585616 92585925 -109742422 + AluSg SINE Alu 1 306 -4 785 197 0 0 chr4 92585956 92586088 -109742259 + FLAM_C SINE Alu 1 132 -1 2081 130 0 3 chr4 92586280 92586580 -109741767 + AluSx SINE Alu 1 299 -13 225 0 0 0 chr4 92587168 92587193 -109741154 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 252 0 0 0 chr4 92587192 92587220 -109741127 + (TA)n Simple_repeat Simple_repeat 1 28 0 2042 148 0 0 chr4 92587221 92587519 -109740828 - AluSx SINE Alu -14 298 1 216 97 0 0 chr4 92587557 92587588 -109740759 + (A)n Simple_repeat Simple_repeat 1 31 0 1724 187 0 0 chr4 92587849 92588133 -109740214 + AluSx SINE Alu 2 285 -27 180 0 0 0 chr4 92588137 92588157 -109740190 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2317 94 7 0 chr4 92588594 92588892 -109739455 - AluSp SINE Alu -13 300 1 756 204 8 0 chr4 92588900 92589032 -109739315 - FLAM_A SINE Alu 0 133 1 1960 123 10 16 chr4 92589044 92589354 -109738993 - AluSx SINE Alu -4 308 1 295 221 58 12 chr4 92589663 92589749 -109738598 - MIR SINE MIR -81 181 92 302 0 26 0 chr4 92589799 92589837 -109738510 + (TTG)n Simple_repeat Simple_repeat 1 39 0 830 225 7 0 chr4 92589839 92589990 -109738357 - FRAM SINE Alu -14 152 1 21 36 0 0 chr4 92590128 92590156 -109738191 + AT_rich Low_complexity Low_complexity 1 28 0 1777 177 13 10 chr4 92590162 92590333 -109738014 - AluSx SINE Alu -9 303 129 2323 83 0 3 chr4 92590333 92590621 -109737726 - AluSc SINE Alu -22 287 1 1777 177 13 10 chr4 92590621 92590749 -109737598 - AluSx SINE Alu -183 129 3 186 279 0 0 chr4 92591544 92591587 -109736760 - MIR SINE MIR -4 258 216 * 415 319 124 58 chr4 92591553 92591621 -109736726 - L2 LINE L2 -19 3253 3191 2283 109 0 3 chr4 92591621 92591924 -109736423 + AluSg SINE Alu 1 302 -8 415 319 124 58 chr4 92591924 92592192 -109736155 - L2 LINE L2 -81 3191 2885 2279 123 29 59 chr4 92592192 92592234 -109736113 - THE1B LTR MaLR 0 364 322 2425 92 10 0 chr4 92592234 92592540 -109735807 + AluSc SINE Alu 1 309 0 2279 123 29 59 chr4 92592540 92592872 -109735475 - THE1B LTR MaLR -42 322 1 415 319 124 58 chr4 92592872 92592929 -109735418 - L2 LINE L2 -387 2885 2833 653 325 155 14 chr4 92593127 92593714 -109734633 - L2 LINE L2 -842 2472 1803 2251 116 0 0 chr4 92594342 92594644 -109733703 + AluSx SINE Alu 1 302 -10 1594 147 88 21 chr4 92594829 92595114 -109733233 + AluJo SINE Alu 1 304 -8 1433 239 25 40 chr4 92595145 92595546 -109732801 + LTR16A LTR ERVL 56 450 0 1692 132 0 0 chr4 92595710 92595953 -109732394 - AluSx SINE Alu -69 243 1 745 178 11 122 chr4 92596107 92596212 -109732135 + MER45A DNA AcHobo 2 80 -1501 1696 169 10 30 chr4 92596212 92596508 -109731839 - AluJb SINE Alu -16 296 7 745 178 11 122 chr4 92596508 92596582 -109731765 + MER45A DNA AcHobo 80 161 -17 2348 109 0 0 chr4 92597109 92597411 -109730936 - AluSx SINE Alu -10 302 1 26 50 0 0 chr4 92598201 92598241 -109730106 + AT_rich Low_complexity Low_complexity 1 40 0 2273 71 28 0 chr4 92598248 92598530 -109729817 + AluSc SINE Alu 5 294 -15 1297 96 0 27 chr4 92598679 92598691 -109729656 + AluSc SINE Alu 123 134 -175 2409 86 0 6 chr4 92598691 92599005 -109729342 + AluSx SINE Alu 1 312 0 1297 96 0 27 chr4 92599005 92599180 -109729167 + AluSc SINE Alu 134 305 -4 463 169 0 24 chr4 92599721 92599804 -109728543 + AluJ/FRAM SINE Alu 223 303 -9 2159 106 3 7 chr4 92599938 92600241 -109728106 - AluSq SINE Alu -11 302 1 2158 104 0 71 chr4 92601570 92601907 -109726440 - AluSq SINE Alu 0 313 1 200 343 27 0 chr4 92602920 92602993 -109725354 + MIR SINE MIR 186 260 -2 761 185 0 0 chr4 92603107 92603226 -109725121 - FLAM_C SINE Alu -14 119 1 590 144 144 40 chr4 92603226 92603321 -109725026 + L1MCa LINE L1 1823 1907 -4519 1813 129 0 0 chr4 92603321 92603569 -109724778 - AluY SINE Alu -63 248 1 590 144 144 40 chr4 92603569 92603646 -109724701 + L1MCa LINE L1 1907 2013 -4413 1551 236 31 72 chr4 92603646 92604391 -109723956 + L1MCa LINE L1 3199 3912 -2514 193 103 0 0 chr4 92604426 92604455 -109723892 + MER5A DNA MER1_type 41 69 -120 719 151 0 9 chr4 92604461 92604567 -109723780 + U6 snRNA snRNA 1 105 -2 199 268 223 9 chr4 92604578 92604690 -109723657 + MER5A DNA MER1_type 54 189 0 * 208 261 345 0 chr4 92604685 92604804 -109723543 + MER5B DNA MER1_type 1 160 -18 1465 188 33 33 chr4 92604995 92605109 -109723238 + AluJo SINE Alu 9 122 -190 243 61 0 0 chr4 92605109 92605142 -109723205 + (TA)n Simple_repeat Simple_repeat 1 33 0 1465 188 33 33 chr4 92605142 92605164 -109723183 + AluJo SINE Alu 122 143 -169 1752 170 92 9 chr4 92605164 92605481 -109722866 - MER61A LTR ERV1 0 343 1 1465 188 33 33 chr4 92605481 92605646 -109722701 + AluJo SINE Alu 142 311 -1 22 35 0 0 chr4 92605780 92605809 -109722538 + AT_rich Low_complexity Low_complexity 1 29 0 2182 89 58 0 chr4 92606247 92606538 -109721809 + AluSq SINE Alu 1 308 -5 2177 86 0 4 chr4 92606898 92607205 -109721142 + AluSc SINE Alu 1 306 0 2290 75 0 3 chr4 92608423 92608739 -109719608 - AluSc SINE Alu 0 315 1 756 149 58 0 chr4 92608935 92609056 -109719291 + FLAM_C SINE Alu 1 128 -5 809 65 219 0 chr4 92609575 92609698 -109718649 - LTR12 LTR ERV1 -560 154 5 1048 136 0 7 chr4 92609698 92609853 -109718494 - AluSq SINE Alu -159 154 1 1816 176 3 3 chr4 92610301 92610602 -109717745 - AluJo SINE Alu -11 301 1 1323 224 121 62 chr4 92610923 92611453 -109716894 - MER68 LTR ERV1 -1 561 1 711 83 21 0 chr4 92611680 92611776 -109716571 + AluSg/x SINE Alu 200 297 -12 2106 132 10 0 chr4 92611789 92612092 -109716255 + AluSx SINE Alu 1 306 -6 2091 118 23 7 chr4 92612140 92612444 -109715903 + AluSx SINE Alu 1 309 -3 189 0 0 0 chr4 92612780 92612801 -109715546 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 345 47 0 0 chr4 92612943 92612986 -109715361 + (CA)n Simple_repeat Simple_repeat 2 44 0 643 198 26 0 chr4 92612994 92613110 -109715237 - FLAM_A SINE Alu -14 119 1 1261 162 48 13 chr4 92613343 92613571 -109714776 - AluJo SINE Alu -6 306 71 875 206 0 12 chr4 92613706 92613871 -109714476 + FAM SINE Alu 1 44 -5 725 236 55 6 chr4 92613979 92614161 -109714186 - L1PB4 LINE L1 0 6156 5966 2004 132 0 10 chr4 92614171 92614475 -109713872 - AluY SINE Alu -10 301 1 3398 211 113 93 chr4 92615011 92615661 -109712686 + L2 LINE L2 513 1149 -2165 1655 176 0 17 chr4 92615661 92615951 -109712396 - AluJo SINE Alu -16 296 12 3398 211 113 93 chr4 92615951 92616441 -109711906 + L2 LINE L2 1149 1628 -1686 2136 107 3 10 chr4 92616441 92616741 -109711606 - AluSc SINE Alu -11 298 1 2016 129 7 0 chr4 92616741 92617020 -109711327 - AluJo SINE Alu -7 305 25 3398 211 113 93 chr4 92617020 92617187 -109711160 + L2 LINE L2 1627 1848 -1466 365 122 60 48 chr4 92617187 92617270 -109711077 + MLT1G1 LTR MaLR 466 595 0 803 157 33 0 chr4 92617336 92617457 -109710890 + AluJ SINE Alu 1 125 -187 915 216 53 0 chr4 92617469 92617538 -109710809 - AluJo SINE Alu -112 200 136 186 43 0 0 chr4 92617538 92617561 -109710786 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 915 216 53 0 chr4 92617561 92617681 -109710666 - AluJo SINE Alu -176 136 1 * 955 164 11 48 chr4 92617681 92617869 -109710478 + AluJ SINE Alu 117 297 -15 321 374 32 12 chr4 92617924 92618173 -109710174 + HERV16 LTR ERVL 915 1168 -3828 451 367 54 6 chr4 92618362 92618678 -109709669 + HERV16 LTR ERVL 1492 1822 -3942 369 181 24 24 chr4 92618715 92618798 -109709549 - MER20 DNA MER1_type 0 219 137 2361 290 76 37 chr4 92618878 92619508 -109708839 + HERV16 LTR ERVL 3769 4450 -1314 2362 85 0 3 chr4 92619508 92619803 -109708544 + AluSx SINE Alu 3 296 -16 2361 290 76 37 chr4 92619803 92620116 -109708231 + HERV16 LTR ERVL 4450 4749 -1015 2116 134 0 3 chr4 92620137 92620435 -109707912 + AluSx SINE Alu 1 297 -15 1546 182 28 7 chr4 92620460 92620751 -109707596 + AluJo SINE Alu 11 307 -5 1252 251 94 32 chr4 92620786 92621192 -109707155 + L2 LINE L2 2868 3298 -15 1902 113 48 27 chr4 92621210 92621503 -109706844 - L1PB1 LINE L1 -1 6150 5852 754 193 15 0 chr4 92621601 92621736 -109706611 - MER58B DNA MER1_type -4 337 201 394 323 244 7 chr4 92622005 92622284 -109706063 - L2 LINE L2 -9 3304 2960 1614 167 30 0 chr4 92622387 92622651 -109705696 + AluJb SINE Alu 28 299 -13 2172 98 3 20 chr4 92622666 92622971 -109705376 + AluY SINE Alu 2 301 -10 473 272 20 20 chr4 92623794 92623941 -109704406 + MER5A DNA MER1_type 40 186 -3 436 261 116 51 chr4 92624040 92624255 -109704092 - MIR SINE MIR 0 262 34 2358 142 34 0 chr4 92624306 92624658 -109703689 + THE1B LTR MaLR 1 364 0 10749 110 53 30 chr4 92624658 92626203 -109702144 + THE1B-int LTR MaLR 1 1580 0 292 77 0 0 chr4 92626204 92626243 -109702104 + THE1B LTR MaLR 13 51 -377 219 219 56 125 chr4 92627136 92627296 -109701051 - MIR SINE MIR -1 261 113 31392 98 14 28 chr4 92627340 92630325 -109698022 + L1PA7 LINE L1 164 3190 -3279 2402 85 0 0 chr4 92630325 92630618 -109697729 + AluY SINE Alu 1 293 -18 31392 98 14 28 chr4 92630618 92630641 -109697706 + L1PA7 LINE L1 3190 3212 -3257 2424 97 0 0 chr4 92630641 92630950 -109697397 + AluY SINE Alu 1 309 -2 31392 98 14 28 chr4 92630950 92634224 -109694123 + L1PA7 LINE L1 3212 6446 -23 264 309 43 32 chr4 92635200 92635294 -109693053 + L2 LINE L2 3164 3258 -14 3362 117 45 0 chr4 92635456 92635928 -109692419 + MER1A DNA MER1_type 37 529 0 205 279 0 44 chr4 92637744 92637812 -109690535 + L2 LINE L2 3237 3301 -12 843 135 23 23 chr4 92638104 92638237 -109690110 + FLAM_C SINE Alu 1 133 0 2385 104 0 0 chr4 92639030 92639338 -109689009 + AluSx SINE Alu 1 308 -4 1415 170 0 4 chr4 92640315 92640544 -109687803 - AluSc SINE Alu -81 228 1 660 230 17 46 chr4 92640554 92640728 -109687619 + L1ME LINE L1 5561 5729 -437 1739 105 0 0 chr4 92641408 92641637 -109686710 + AluSg/x SINE Alu 76 304 -6 437 115 33 0 chr4 92642660 92642721 -109685626 + MER57B LTR ERV1 316 378 -56 24 32 0 0 chr4 92642724 92642755 -109685592 + AT_rich Low_complexity Low_complexity 1 31 0 271 184 9 114 chr4 92642931 92643045 -109685302 + L1MEc LINE L1 1268 1369 -5238 465 232 75 61 chr4 92643097 92643377 -109684970 + L1MEc LINE L1 1181 1649 -4958 1897 166 11 61 chr4 92643583 92643656 -109684691 - MER2 DNA MER2_type 0 344 269 1763 175 0 7 chr4 92643656 92643947 -109684400 + AluJb SINE Alu 1 289 -23 1897 166 11 61 chr4 92643947 92644235 -109684112 - MER2 DNA MER2_type -75 269 1 6205 110 22 7 chr4 92644460 92645787 -109682560 - HERVH LTR ERV1 -3171 4562 3140 478 130 0 6 chr4 92645831 92645962 -109682385 - LTR7 LTR ERV1 -231 219 1 2041 113 24 14 chr4 92646036 92646329 -109682018 + AluSx SINE Alu 1 296 -16 2972 217 123 49 chr4 92646340 92646508 -109681839 + L1MC4a LINE L1 6165 6319 -1489 2234 101 16 3 chr4 92646508 92646814 -109681533 + AluSx SINE Alu 3 312 0 2972 217 123 49 chr4 92646814 92647240 -109681107 + L1MC4a LINE L1 6319 6712 -1096 2106 95 18 3 chr4 92647240 92647523 -109680824 + AluSq SINE Alu 5 291 -22 2972 217 123 49 chr4 92647523 92647990 -109680357 + L1MC4a LINE L1 6712 7808 0 22 35 0 0 chr4 92650184 92650213 -109678134 + AT_rich Low_complexity Low_complexity 1 29 0 2059 112 10 3 chr4 92650376 92650672 -109677675 + AluSx SINE Alu 1 298 -14 24 0 0 0 chr4 92650733 92650757 -109677590 + AT_rich Low_complexity Low_complexity 1 24 0 2270 112 3 0 chr4 92650982 92651286 -109677061 + AluSx SINE Alu 1 305 -7 1169 175 18 31 chr4 92651308 92651531 -109676816 + AluJo SINE Alu 1 220 -92 239 150 0 0 chr4 92651532 92651572 -109676775 + AluJo SINE Alu 87 126 -176 7900 8 0 0 chr4 92651585 92652457 -109675890 - L1HS LINE L1 0 6155 5284 694 202 0 24 chr4 92652457 92652581 -109675766 + AluJo SINE Alu 117 237 -75 23 78 0 0 chr4 92652688 92652739 -109675608 + AT_rich Low_complexity Low_complexity 1 51 0 204 264 73 73 chr4 92653113 92653223 -109675124 - MIR3 SINE MIR -12 196 87 231 348 53 37 chr4 92653699 92653886 -109674461 - L2 LINE L2 -1504 1810 1621 21 0 0 0 chr4 92654423 92654444 -109673903 + AT_rich Low_complexity Low_complexity 1 21 0 2934 80 13 13 chr4 92654450 92654487 -109673860 + THE1C LTR MaLR 1 37 -338 2237 103 7 0 chr4 92654487 92654779 -109673568 - AluSx SINE Alu -18 294 1 2934 80 13 13 chr4 92654779 92655116 -109673231 + THE1C LTR MaLR 36 375 0 2089 148 0 3 chr4 92655182 92655493 -109672854 - AluSx SINE Alu -2 310 1 1847 150 104 112 chr4 92655640 92656021 -109672326 - MLT1D LTR MaLR -2 503 125 2340 89 0 0 chr4 92656021 92656313 -109672034 + AluSg SINE Alu 14 305 -5 1847 150 104 112 chr4 92656313 92656438 -109671909 - MLT1D LTR MaLR -380 125 1 251 202 22 67 chr4 92656499 92656588 -109671759 + MER34B LTR ERV1 31 115 -450 318 148 99 59 chr4 92656880 92656981 -109671366 + MER34 LTR ERV1 433 537 -5 284 296 100 65 chr4 92657282 92657397 -109670950 - L2 LINE L2 -2427 887 777 1977 213 92 50 chr4 92657397 92657784 -109670563 - MLT1E3 LTR MaLR 0 624 202 2322 89 3 10 chr4 92657784 92658087 -109670260 - AluSx SINE Alu -9 303 3 1977 213 92 50 chr4 92658087 92658295 -109670052 - MLT1E3 LTR MaLR -422 202 4 284 296 100 65 chr4 92658295 92658500 -109669847 - L2 LINE L2 -2537 777 556 190 216 0 0 chr4 92658511 92658548 -109669799 + MIR SINE MIR 19 55 -207 2167 107 7 0 chr4 92658620 92658909 -109669438 + AluSc SINE Alu 1 291 -18 2322 87 0 3 chr4 92708909 92709220 -109619127 - AluSx SINE Alu 0 310 1 1319 145 50 0 chr4 92709787 92710029 -109618318 - L1MA9 LINE L1 0 6312 6059 820 174 0 22 chr4 92710060 92710198 -109618149 - FLAM_C SINE Alu -7 136 2 230 283 19 75 chr4 92710687 92710793 -109617554 - L2 LINE L2 -1 3312 3213 2452 87 3 0 chr4 92711476 92711787 -109616560 - AluSp SINE Alu -1 312 1 1414 96 61 0 chr4 92711866 92712091 -109616256 + AluSg/x SINE Alu 76 312 0 255 77 0 0 chr4 92712162 92712201 -109616146 - MER41B LTR ERV1 -86 549 511 904 56 38 10 chr4 92712938 92713332 -109615015 + (TA)n Simple_repeat Simple_repeat 1 405 0 2223 77 3 3 chr4 92713341 92713626 -109614721 + AluSc SINE Alu 1 285 -24 30 0 0 0 chr4 92713627 92713657 -109614690 + AT_rich Low_complexity Low_complexity 1 30 0 851 283 60 12 chr4 92713691 92714094 -109614253 - L1ME4a LINE L1 -67 6054 5633 841 271 62 62 chr4 92714094 92714451 -109613896 - MER34 LTR ERV1 0 542 183 2291 110 3 0 chr4 92714451 92714760 -109613587 - AluSg SINE Alu 0 310 1 841 271 62 62 chr4 92714760 92714889 -109613458 - MER34 LTR ERV1 -358 184 56 1812 150 15 85 chr4 92715516 92715915 -109612432 - MER93b LTR ERV1 -2 371 1 279 209 108 108 chr4 92716306 92716381 -109611966 - L2 LINE L2 -1 3271 3194 2041 137 0 16 chr4 92716381 92716696 -109611651 + AluSx SINE Alu 1 310 -2 279 209 108 108 chr4 92716696 92716749 -109611598 - L2 LINE L2 -77 3195 3143 2257 102 3 10 chr4 92716861 92717164 -109611183 - AluSg SINE Alu -9 301 1 2192 207 0 3 chr4 92717323 92717685 -109610662 + MLT1A1 LTR MaLR 1 361 -4 24 32 0 0 chr4 92718023 92718054 -109610293 + AT_rich Low_complexity Low_complexity 1 31 0 869 195 39 163 chr4 92718295 92718803 -109609544 - MER65A LTR ERV1 0 445 1 1448 109 106 141 chr4 92718867 92719179 -109609168 + AluJb SINE Alu 1 301 -1 350 165 41 25 chr4 92719203 92719324 -109609023 + G-rich Low_complexity Low_complexity 4 126 0 433 289 41 66 chr4 92719553 92719750 -109608597 - MLT1H LTR MaLR -222 327 136 3983 178 49 5 chr4 92719754 92720506 -109607841 - MER52A LTR ERV1 -1 1754 970 2464 228 36 58 chr4 92720498 92721192 -109607155 - MER52A LTR ERV1 -1076 679 1 * 901 213 166 78 chr4 92721195 92721659 -109606688 + MLT1H LTR MaLR 1 549 0 520 250 205 10 chr4 92721912 92722112 -109606235 + MLT1H1 LTR MaLR 32 270 -285 2867 135 49 5 chr4 92722154 92722583 -109605764 + MER83 LTR ERV1 1 448 0 954 194 6 0 chr4 92722632 92722807 -109605540 - L1M4 LINE L1 -400 5784 5609 960 149 0 0 chr4 92722851 92722992 -109605355 - FLAM_C SINE Alu -2 141 1 2317 82 3 0 chr4 92723132 92723426 -109604921 + AluSg SINE Alu 1 295 -15 363 318 184 7 chr4 92723427 92723710 -109604637 + L2 LINE L2 2977 3309 -4 1515 173 63 0 chr4 92724138 92724409 -109603938 - AluJb SINE Alu -24 288 1 2236 114 3 0 chr4 92724655 92724954 -109603393 - AluSq SINE Alu -13 300 1 356 155 14 0 chr4 92725144 92725215 -109603132 + L1MB4 LINE L1 6106 6177 -3 2414 82 0 13 chr4 92725258 92725573 -109602774 - AluY SINE Alu 0 311 1 925 184 31 66 chr4 92725690 92725886 -109602461 - MER5A DNA MER1_type 0 189 1 1955 318 187 28 chr4 92726097 92726541 -109601806 + L2 LINE L2 315 687 -2627 1185 194 9 65 chr4 92726541 92726773 -109601574 - MER20 DNA MER1_type 0 219 1 1955 318 187 28 chr4 92726773 92727526 -109600821 + L2 LINE L2 687 1319 -1995 2528 65 7 0 chr4 92727526 92727833 -109600514 - AluSg SINE Alu -1 309 1 1955 318 187 28 chr4 92727833 92728092 -109600255 + L2 LINE L2 1319 2003 -1311 1687 135 7 38 chr4 92728092 92728380 -109599967 - Tigger7 DNA MER2_type 0 2587 2309 930 205 30 0 chr4 92728381 92728547 -109599800 - Tigger7 DNA MER2_type -534 171 1 1634 157 67 0 chr4 92728549 92728852 -109599495 + AluJo SINE Alu 1 321 0 745 311 101 44 chr4 92728977 92729259 -109599088 + L2 LINE L2 2832 3151 -162 2085 111 10 3 chr4 92729259 92729557 -109598790 - AluSx SINE Alu -12 300 1 745 311 101 44 chr4 92729557 92729728 -109598619 + L2 LINE L2 3151 3311 -2 686 289 66 4 chr4 92730038 92730280 -109598067 + MIR SINE MIR 2 258 -4 2192 112 0 10 chr4 92730931 92731234 -109597113 + AluSx SINE Alu 1 300 -12 302 233 0 0 chr4 92731234 92731294 -109597053 + MER116 DNA Mariner 21 80 0 29 47 0 0 chr4 92732144 92732187 -109596160 + AT_rich Low_complexity Low_complexity 1 43 0 1199 231 67 93 chr4 92732279 92732388 -109595959 - MER34 LTR ERV1 -6 536 426 2448 100 0 0 chr4 92732388 92732699 -109595648 - AluSx SINE Alu -1 311 1 1199 231 67 93 chr4 92732699 92733139 -109595208 - MER34 LTR ERV1 -116 426 1 615 321 11 42 chr4 92733210 92733308 -109595039 - MIR SINE MIR -4 258 159 1852 181 0 0 chr4 92733308 92733611 -109594736 + AluJo SINE Alu 1 303 -9 615 321 11 42 chr4 92733611 92733777 -109594570 - MIR SINE MIR -103 159 2 534 260 75 17 chr4 92733825 92733998 -109594349 + MIR SINE MIR 67 249 -13 913 76 93 0 chr4 92734344 92734462 -109593885 + AluSq/x SINE Alu 1 129 -183 2259 113 3 0 chr4 92734462 92734763 -109593584 + AluSx SINE Alu 1 302 -10 599 149 44 18 chr4 92734763 92734877 -109593470 - LTR49 LTR ERV1 -66 529 413 * 1865 132 28 0 chr4 92734876 92735165 -109593182 - LTR49 LTR ERV1 -292 303 7 1338 244 153 26 chr4 92735184 92735845 -109592502 - L2 LINE L2 -203 3110 2370 2829 123 51 33 chr4 92735965 92736088 -109592259 + L1MA9 LINE L1 5815 5934 -378 2294 109 3 6 chr4 92736088 92736399 -109591948 + AluSx SINE Alu 1 310 -2 2829 123 51 33 chr4 92736399 92736764 -109591583 + L1MA9 LINE L1 5934 6312 0 780 188 11 54 chr4 92737162 92737206 -109591141 + MER5B DNA MER1_type 1 45 -133 1966 189 42 71 chr4 92737206 92737726 -109590621 - MLT1D LTR MaLR 0 505 1 780 188 11 54 chr4 92737726 92737867 -109590480 + MER5B DNA MER1_type 45 178 0 186 43 0 0 chr4 92738104 92738127 -109590220 + (TTTCC)n Simple_repeat Simple_repeat 3 25 0 453 142 9 38 chr4 92738127 92738233 -109590114 + C-rich Low_complexity Low_complexity 3 105 0 2138 145 33 38 chr4 92738343 92738589 -109589758 - L1MB4 LINE L1 -111 6069 5824 2263 95 17 3 chr4 92738589 92738883 -109589464 - AluSq SINE Alu -10 303 6 2138 145 33 38 chr4 92738883 92739056 -109589291 - L1MB4 LINE L1 -356 5824 5652 196 260 42 52 chr4 92739553 92739649 -109588698 - L2 LINE L2 -4 3309 3215 2004 110 11 11 chr4 92741137 92741458 -109586889 - AluSx SINE Alu 0 321 1 2121 123 0 10 chr4 92741469 92741779 -109586568 - AluSx SINE Alu -4 308 2 180 0 0 0 chr4 92741781 92741801 -109586546 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1545 173 3 37 chr4 92741814 92742109 -109586238 - AluJo SINE Alu -26 286 2 1345 205 95 44 chr4 92742205 92742615 -109585732 - MER110A LTR ERV1 -37 431 1 3599 150 49 46 chr4 92743103 92743795 -109584552 - LTR8A LTR ERV1 0 727 34 1007 144 25 6 chr4 92744291 92744451 -109583896 - MLT1A1 LTR MaLR -27 338 176 1933 140 6 22 chr4 92744451 92744802 -109583545 - MER4A LTR ERV1 0 664 261 670 91 10 20 chr4 92744802 92744901 -109583446 - MER4A LTR ERV1 -566 98 1 * 1134 152 33 5 chr4 92744901 92745075 -109583272 - MLT1A1 LTR MaLR -186 179 1 236 266 161 24 chr4 92745691 92745815 -109582532 - MER103 DNA DNA -16 150 10 953 284 92 45 chr4 92746013 92746439 -109581908 - MLT1J2 LTR MaLR -2 448 3 288 269 146 70 chr4 92746470 92746641 -109581706 + MIR SINE MIR 69 252 -10 1276 188 53 12 chr4 92746723 92746968 -109581379 + AluJo SINE Alu 1 255 -57 22 0 0 0 chr4 92747014 92747036 -109581311 + AT_rich Low_complexity Low_complexity 1 22 0 1285 201 82 34 chr4 92748108 92748573 -109579774 - LTR48B LTR ERV1 -94 528 1 1582 157 33 59 chr4 92748589 92748814 -109579533 + AluJo SINE Alu 1 217 -95 4085 113 13 2 chr4 92748814 92749362 -109578985 - MER41A LTR ERV1 0 554 1 1582 157 33 59 chr4 92749362 92749441 -109578906 + AluJo SINE Alu 217 297 -15 367 468 36 39 chr4 92749577 92749934 -109578413 - L1MC4a LINE L1 -1889 5919 5564 438 261 118 20 chr4 92750032 92750235 -109578112 - L1MC4a LINE L1 -2242 5566 5344 1808 209 23 98 chr4 92750252 92750811 -109577536 - LTR26E LTR ERV1 -12 610 3 624 320 134 22 chr4 92750833 92751371 -109576976 - L1MC4a LINE L1 -824 5322 4725 21 0 0 0 chr4 92751440 92751461 -109576886 + AT_rich Low_complexity Low_complexity 1 21 0 982 145 0 14 chr4 92752316 92752461 -109575886 + FRAM SINE Alu 18 160 -16 1141 250 26 20 chr4 92752495 92752799 -109575548 + L1ME3 LINE L1 5835 6140 -22 2599 159 12 7 chr4 92752799 92753208 -109575139 - LTR57 LTR ERVL 0 411 1 2139 107 4 0 chr4 92753217 92753525 -109574822 - AluSx SINE Alu 0 309 1 326 270 124 13 chr4 92754134 92754382 -109573965 + L1ME LINE L1 5352 5629 -492 1719 171 10 33 chr4 92754382 92754686 -109573661 - AluJb SINE Alu -15 297 1 400 219 0 0 chr4 92754704 92754777 -109573570 - FRAM/FAM SINE Alu -105 71 1 662 262 58 16 chr4 92755427 92755618 -109572729 + MIR SINE MIR 7 205 -57 188 183 283 17 chr4 92755645 92755705 -109572642 + MIR SINE MIR 187 262 0 2964 91 8 0 chr4 92756193 92756554 -109571793 + THE1B LTR MaLR 1 364 0 372 262 113 28 chr4 92756829 92756970 -109571377 + MIR SINE MIR 12 164 -98 200 273 0 18 chr4 92756971 92757026 -109571321 + L2 LINE L2 3259 3312 -1 203 209 23 76 chr4 92757312 92757484 -109570863 + (ATGGTG)n Simple_repeat Simple_repeat 5 167 0 268 174 22 87 chr4 92757879 92758063 -109570284 + (ATGGTG)n Simple_repeat Simple_repeat 1 172 0 358 273 124 68 chr4 92758462 92758950 -109569397 + MER34B LTR ERV1 1 565 0 2186 61 4 0 chr4 92759317 92759579 -109568768 + AluY SINE Alu 37 299 -12 21 0 0 0 chr4 92763775 92763796 -109564551 + AT_rich Low_complexity Low_complexity 1 21 0 2235 171 48 139 chr4 92764129 92764339 -109564008 + LTR9 LTR ERV1 1 229 -383 2185 124 7 0 chr4 92764339 92764646 -109563701 + AluSp SINE Alu 1 309 -4 2235 171 48 139 chr4 92764646 92765109 -109563238 + LTR9 LTR ERV1 229 612 0 318 286 41 20 chr4 92765341 92765439 -109562908 - L2 LINE L2 -9 3263 3164 28 91 0 0 chr4 92765863 92765940 -109562407 + AT_rich Low_complexity Low_complexity 1 77 0 718 136 29 0 chr4 92766145 92766248 -109562099 - U6 snRNA snRNA 0 107 2 200 242 358 0 chr4 92767047 92767142 -109561205 + MIR3 SINE MIR 15 143 -65 271 296 91 11 chr4 92768324 92768412 -109559935 - L2 LINE L2 -16 3297 3203 246 176 0 0 chr4 92769615 92769666 -109558681 + GA-rich Low_complexity Low_complexity 2 52 0 364 256 44 0 chr4 92769931 92770021 -109558326 - MER5A DNA MER1_type -83 106 13 784 185 8 0 chr4 92771050 92771180 -109557167 - FLAM_C SINE Alu -11 132 2 1477 184 124 0 chr4 92771423 92771689 -109556658 + AluJo SINE Alu 1 299 -3 623 200 0 27 chr4 92771689 92771799 -109556548 + AluJb SINE Alu 183 289 -23 24 0 0 0 chr4 92772311 92772335 -109556012 + AT_rich Low_complexity Low_complexity 1 24 0 1880 128 35 0 chr4 92774056 92774345 -109554002 - AluJb SINE Alu -13 299 1 310 307 110 40 chr4 92774884 92775112 -109553235 + L1M2 LINE L1 1087 1330 -5519 636 334 119 32 chr4 92776029 92776760 -109551587 - L2 LINE L2 0 3313 2507 2014 153 7 0 chr4 92776941 92777248 -109551099 - AluJb SINE Alu -2 310 2 1622 238 52 6 chr4 92777270 92777736 -109550611 - L1ME3A LINE L1 -9 6161 5674 1554 164 11 8 chr4 92778264 92778526 -109549821 + AluJb SINE Alu 1 263 -49 2334 34 4 0 chr4 92778526 92778792 -109549555 + AluY SINE Alu 32 298 -13 528 140 0 32 chr4 92778797 92778890 -109549457 + L1PA15 LINE L1 6067 6156 -9 1027 190 25 0 chr4 92779088 92779251 -109549096 - FAM SINE Alu -8 167 1 1814 162 0 20 chr4 92779624 92779926 -109548421 + AluJo SINE Alu 9 304 -8 2255 120 0 0 chr4 92780059 92780359 -109547988 + AluSx SINE Alu 1 300 -12 589 305 136 26 chr4 92780587 92780895 -109547452 + MLT1I LTR MaLR 1 342 -67 327 322 0 34 chr4 92781030 92781148 -109547199 - L2 LINE L2 0 3313 3200 249 290 62 0 chr4 92781324 92781442 -109546905 + MIR SINE MIR 37 163 -67 1170 180 45 0 chr4 92782924 92783146 -109545201 - MLT2D LTR ERVL -182 232 1 1165 213 28 28 chr4 92783146 92783395 -109544952 - MIR SINE MIR -8 254 6 459 253 97 19 chr4 92783521 92783675 -109544672 - MIR SINE MIR -78 184 19 838 188 12 35 chr4 92783732 92783902 -109544445 + FRAM SINE Alu 1 166 -10 2200 110 0 0 chr4 92784107 92784399 -109543948 - AluSx SINE Alu -20 292 1 468 0 0 0 chr4 92784493 92784545 -109543802 + (TA)n Simple_repeat Simple_repeat 1 52 0 643 288 145 49 chr4 92784764 92785129 -109543218 + MLT1J LTR MaLR 1 400 -111 3012 147 21 6 chr4 92785129 92785612 -109542735 - MER39 LTR ERV1 -3 704 215 2236 75 58 0 chr4 92785629 92785922 -109542425 + AluY SINE Alu 1 310 -1 982 209 80 29 chr4 92786009 92786248 -109542099 + AluJo SINE Alu 1 251 -61 881 69 26 25 chr4 92786348 92786955 -109541392 + (TA)n Simple_repeat Simple_repeat 1 607 0 355 315 97 35 chr4 92787844 92788041 -109540306 + MIR SINE MIR 15 226 -36 2023 100 7 7 chr4 92788102 92788420 -109539927 - AluSx SINE Alu 0 318 1 381 285 146 50 chr4 92788420 92788680 -109539667 - L2 LINE L2 -62 3251 2967 1352 272 129 19 chr4 92788688 92789364 -109538983 - L2 LINE L2 -560 2754 1914 1797 141 25 4 chr4 92789364 92789668 -109538679 - AluSq SINE Alu 0 310 1 1352 272 129 19 chr4 92789668 92789702 -109538645 - L2 LINE L2 -1400 1914 1885 2218 117 0 0 chr4 92790086 92790377 -109537970 - AluSx SINE Alu -21 291 1 12823 146 47 43 chr4 92790384 92790486 -109537861 - L1MA4 LINE L1 -5 6295 6195 2026 119 30 23 chr4 92790486 92790788 -109537559 + AluJb SINE Alu 1 304 -8 12823 146 47 43 chr4 92790788 92791965 -109536382 - L1MA4 LINE L1 -105 6195 5024 2353 107 0 0 chr4 92791965 92792275 -109536072 - AluSq SINE Alu -3 310 1 12823 146 47 43 chr4 92792275 92792780 -109535567 - L1MA4 LINE L1 -1276 5024 4522 1861 156 0 0 chr4 92792780 92793056 -109535291 - AluSx SINE Alu -36 276 1 12823 146 47 43 chr4 92793056 92793438 -109534909 - L1MA4 LINE L1 -1778 4522 4143 2170 129 0 0 chr4 92793438 92793741 -109534606 + AluSx SINE Alu 1 303 -9 12823 146 47 43 chr4 92793741 92795162 -109533185 - L1MA4 LINE L1 -2157 4143 2697 273 247 0 65 chr4 92795272 92795349 -109532998 + L2 LINE L2 3201 3272 0 1462 119 5 23 chr4 92795524 92795742 -109532605 + AluSg/x SINE Alu 83 296 -14 308 217 14 14 chr4 92795742 92795811 -109532536 - MLT1K LTR MaLR -12 576 508 681 298 85 18 chr4 92795872 92796144 -109532203 + MLT1I LTR MaLR 98 387 -22 514 265 93 114 chr4 92796159 92796491 -109531856 - MLT1K LTR MaLR -81 507 183 348 287 9 52 chr4 92796629 92796744 -109531603 - MIR SINE MIR -88 174 65 2196 113 3 13 chr4 92796744 92797044 -109531303 - AluSx SINE Alu -15 297 1 1764 177 3 0 chr4 92797228 92797528 -109530819 + AluJo SINE Alu 1 301 -11 1939 159 3 3 chr4 92798067 92798375 -109529972 - AluJo SINE Alu 0 312 5 2840 77 19 22 chr4 92798463 92798828 -109529519 + THE1B LTR MaLR 1 364 0 1932 168 0 13 chr4 92798913 92799228 -109529119 + AluSx SINE Alu 1 311 -1 320 259 15 67 chr4 92799694 92799829 -109528518 - MIR SINE MIR -85 177 50 195 114 0 0 chr4 92800242 92800277 -109528070 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 23 33 0 0 chr4 92800539 92800569 -109527778 + AT_rich Low_complexity Low_complexity 1 30 0 2405 75 3 0 chr4 92800799 92801094 -109527253 + AluY SINE Alu 1 296 -15 2308 95 0 7 chr4 92801105 92801400 -109526947 + AluSq SINE Alu 1 293 -20 293 265 39 10 chr4 92801450 92801552 -109526795 - MLT1J LTR MaLR -6 505 401 4617 64 23 31 chr4 92801552 92802602 -109525745 + MER11A LTR ERVK 1 1266 0 676 287 108 59 chr4 92802602 92802942 -109525405 - MLT1J LTR MaLR -105 406 43 922 121 15 23 chr4 92802942 92803074 -109525273 + FLAM_C SINE Alu 1 131 -2 676 287 108 59 chr4 92803074 92803120 -109525227 - MLT1J LTR MaLR -468 43 1 2089 155 55 32 chr4 92803189 92803590 -109524757 + LTR49 LTR ERV1 1 410 -185 1886 152 34 3 chr4 92803600 92803896 -109524451 - AluSx SINE Alu -7 305 1 2014 175 37 33 chr4 92803896 92804324 -109524023 + MER45B DNA AcHobo 367 796 -244 2286 160 42 29 chr4 92804324 92804804 -109523543 - MER34C LTR ERV1 -4 581 96 3540 92 246 2 chr4 92804804 92805357 -109522990 - LTR12 LTR ERV1 0 688 1 3300 32 5 0 chr4 92805675 92806045 -109522302 - L1PA4 LINE L1 0 6155 5784 709 174 0 71 chr4 92806045 92806200 -109522147 - pTR5 LTR ERV1 -1514 924 781 584 206 79 0 chr4 92806201 92806327 -109522020 - MER34C LTR ERV1 -449 136 1 * 1172 198 45 4 chr4 92806327 92806568 -109521779 + MER45B DNA AcHobo 790 1040 0 2724 98 29 54 chr4 92806620 92807028 -109521319 - MER48 LTR ERV1 0 398 1 490 107 116 107 chr4 92807356 92807477 -109520870 + LTR49 LTR ERV1 1 122 -473 391 115 26 39 chr4 92807506 92807584 -109520763 - LTR49-int LTR ERV1 -4554 1777 1701 275 130 0 104 chr4 92807590 92807667 -109520680 - LTR66 LTR ERVL -147 463 395 227 222 0 0 chr4 92807667 92807712 -109520635 + (TA)n Simple_repeat Simple_repeat 2 46 0 2188 138 24 0 chr4 92807747 92808087 -109520260 - MSTA LTR MaLR 0 428 81 1846 125 130 25 chr4 92808077 92808430 -109519917 + LTR49 LTR ERV1 206 595 0 * 638 180 0 0 chr4 92808432 92808532 -109519815 + LTR49-int LTR ERV1 1 100 -6231 1216 107 0 6 chr4 92808533 92808719 -109519628 - AluSq SINE Alu 0 312 128 5947 148 89 40 chr4 92808725 92809579 -109518768 + LTR49-int LTR ERV1 90 1014 -5317 1499 182 10 36 chr4 92809579 92809881 -109518466 - AluJo SINE Alu -13 299 6 5947 148 89 40 chr4 92809881 92810164 -109518183 + LTR49-int LTR ERV1 1014 1282 -5049 10409 162 59 67 chr4 92810179 92810751 -109517596 + LTR49-int LTR ERV1 2643 3218 -3113 1933 113 0 0 chr4 92810751 92811043 -109517304 + AluSg SINE Alu 37 328 0 10409 162 59 67 chr4 92811043 92811900 -109516447 + LTR49-int LTR ERV1 3218 4080 -2251 2055 134 3 0 chr4 92811900 92812191 -109516156 - AluSx SINE Alu -20 292 1 10409 162 59 67 chr4 92812191 92813526 -109514821 + LTR49-int LTR ERV1 4080 5389 -942 2606 108 43 5 chr4 92813513 92813911 -109514436 + LTR49-int LTR ERV1 5919 6331 0 * 3258 125 108 16 chr4 92813911 92814456 -109513891 + LTR49 LTR ERV1 1 595 0 699 307 53 9 chr4 92814614 92814842 -109513505 - MIR SINE MIR -5 257 20 999 170 68 163 chr4 92815684 92815851 -109512496 + LTR8 LTR ERV1 1 120 -571 1902 144 206 11 chr4 92815851 92816206 -109512141 - MSTA LTR MaLR 0 428 5 999 170 68 163 chr4 92816206 92816332 -109512015 + LTR8 LTR ERV1 120 256 -435 1005 111 129 9 chr4 92816342 92816530 -109511817 - LTR8A LTR ERV1 -342 199 2 1057 198 34 53 chr4 92816541 92816797 -109511550 - MER82 DNA MER2_type -364 289 39 573 83 42 21 chr4 92816797 92816893 -109511454 + MER4A LTR ERV1 1 98 -566 394 168 17 13 chr4 92816893 92817014 -109511333 + MER4A LTR ERV1 261 441 -223 1326 173 4 13 chr4 92817059 92817284 -109511063 + MER4B LTR ERV1 388 610 0 2750 108 60 21 chr4 92817367 92817800 -109510547 + LTR7 LTR ERV1 1 450 0 20753 132 11 15 chr4 92817800 92821503 -109506844 + HERVH LTR ERV1 1 3993 -3720 6100 132 5 4 chr4 92821486 92822417 -109505930 + HERVH LTR ERV1 3994 5317 -1774 * 2821 190 20 34 chr4 92822801 92823363 -109504984 - Tigger7 DNA MER2_type -1912 575 22 2663 108 60 21 chr4 92823367 92823800 -109504547 - LTR7 LTR ERV1 0 450 1 3813 91 25 9 chr4 92823800 92824348 -109503999 - HERVH LTR ERV1 0 7713 7157 1224 144 20 0 chr4 92824341 92824543 -109503804 - HERVH LTR ERV1 -1697 6016 5811 * 1432 127 0 23 chr4 92824547 92824768 -109503579 - MSTB1 LTR MaLR -216 216 1 839 196 76 0 chr4 92825633 92825791 -109502556 - MER58B DNA MER1_type 0 341 172 3875 168 36 106 chr4 92825810 92826311 -109502036 + MER21B LTR ERV1 13 547 -316 1948 131 17 13 chr4 92826311 92826609 -109501738 - AluSx SINE Alu -13 299 1 3875 168 36 106 chr4 92826609 92826760 -109501587 + MER21B LTR ERV1 547 595 -268 2238 121 0 3 chr4 92826760 92827073 -109501274 - AluSq SINE Alu -1 312 1 3875 168 36 106 chr4 92827073 92827271 -109501076 + MER21B LTR ERV1 595 805 -58 667 201 24 59 chr4 92827299 92827468 -109500879 - MER58B DNA MER1_type -178 163 1 1953 161 25 3 chr4 92827504 92827821 -109500526 + MLT1A1 LTR MaLR 40 363 -2 336 292 92 0 chr4 92827898 92828018 -109500329 + L1ME LINE L1 5695 5825 -296 198 386 63 8 chr4 92828026 92828153 -109500194 + MIR SINE MIR 17 150 -58 232 132 19 57 chr4 92828821 92828874 -109499473 - L2 LINE L2 0 3313 3263 534 325 39 48 chr4 92829070 92829337 -109499010 + MIR SINE MIR 3 262 0 1018 192 0 0 chr4 92829395 92829567 -109498780 + FRAM SINE Alu 4 175 -1 276 77 0 0 chr4 92829862 92829901 -109498446 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 1672 204 0 28 chr4 92829910 92830228 -109498119 - AluJb SINE Alu -3 309 1 470 278 73 94 chr4 92830337 92830625 -109497722 - L2 LINE L2 -1 3312 3031 2208 104 7 3 chr4 92830726 92831023 -109497324 - AluSx SINE Alu -14 298 1 2455 137 60 0 chr4 92831023 92831426 -109496921 + MSTB1 LTR MaLR 6 432 0 707 241 80 32 chr4 92831501 92831688 -109496659 - MIR SINE MIR -10 252 57 497 304 96 64 chr4 92831690 92831946 -109496401 - L2 LINE L2 -471 2843 2597 2148 133 0 7 chr4 92831946 92832246 -109496101 + AluSx SINE Alu 1 298 -14 497 304 96 64 chr4 92832246 92832676 -109495671 - L2 LINE L2 -717 2597 2135 2106 124 3 0 chr4 92832813 92833124 -109495223 + AluSq SINE Alu 1 312 0 1791 63 0 5 chr4 92833232 92833453 -109494894 - L1PB1 LINE L1 -3 6148 5929 583 171 86 0 chr4 92833528 92833633 -109494714 + AluJb SINE Alu 2 115 -197 1027 123 0 11 chr4 92833635 92833814 -109494533 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 392 156 0 13 chr4 92833814 92833891 -109494456 + GA-rich Low_complexity Low_complexity 1 76 0 2475 128 71 94 chr4 92833965 92834595 -109493752 + MER4B LTR ERV1 1 779 0 624 295 87 43 chr4 92835213 92835535 -109492812 - LTR33 LTR ERVL -14 507 172 307 245 21 11 chr4 92835565 92835659 -109492688 - LTR33 LTR ERVL -424 97 3 422 291 71 20 chr4 92836046 92836300 -109492047 + L1ME4a LINE L1 5677 5943 -178 753 99 0 10 chr4 92836301 92836402 -109491945 + HY3 scRNA scRNA 1 100 -1 27 87 0 0 chr4 92836520 92836589 -109491758 + AT_rich Low_complexity Low_complexity 1 69 0 288 0 0 0 chr4 92836599 92836631 -109491716 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 810 159 0 38 chr4 92836631 92836753 -109491594 - FLAM_C SINE Alu -193 119 1 23 24 0 24 chr4 92836753 92836773 -109491574 + AT_rich Low_complexity Low_complexity 1 20 -20 1729 162 0 37 chr4 92836773 92837070 -109491277 - AluJb SINE Alu -26 286 1 23 24 0 24 chr4 92837070 92837090 -109491257 + AT_rich Low_complexity Low_complexity 20 40 0 3966 150 51 116 chr4 92837161 92837175 -109491172 + MER21A LTR ERV1 13 26 -905 435 119 0 0 chr4 92837175 92837242 -109491105 + (CA)n Simple_repeat Simple_repeat 2 68 0 3966 150 51 116 chr4 92837242 92838186 -109490161 + MER21A LTR ERV1 26 909 -22 535 283 40 0 chr4 92838354 92838506 -109489841 - MER5A DNA MER1_type -20 169 12 200 189 0 0 chr4 92838588 92838625 -109489722 + (CA)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr4 92838838 92838860 -109489487 + AT_rich Low_complexity Low_complexity 1 22 0 2955 9 0 0 chr4 92838910 92839228 -109489119 - AluYb8 SINE Alu 0 318 1 207 416 26 32 chr4 92839281 92839435 -109488912 - L3 LINE CR1 -50 1527 1375 458 319 81 0 chr4 92839494 92839679 -109488668 - L3 LINE CR1 -312 1265 1066 2548 147 35 28 chr4 92840017 92840447 -109487900 - Tigger2a DNA MER2_type -1 433 1 188 167 28 0 chr4 92840532 92840568 -109487779 - L2 LINE L2 -214 3058 3022 784 235 78 23 chr4 92840813 92841030 -109487317 - MLT1K LTR MaLR -7 581 353 270 0 0 0 chr4 92841073 92841103 -109487244 + (TG)n Simple_repeat Simple_repeat 2 31 0 702 202 0 0 chr4 92841103 92841217 -109487130 - FLAM_C SINE Alu -24 119 6 496 304 56 60 chr4 92841238 92841488 -109486859 - MLT1K LTR MaLR -327 261 13 1992 98 0 8 chr4 92841723 92841988 -109486359 - AluSq SINE Alu -1 312 50 3130 133 60 60 chr4 92842112 92842627 -109485720 - LTR49 LTR ERV1 0 595 78 1828 116 23 36 chr4 92842627 92842928 -109485419 - AluJb SINE Alu -15 297 1 3130 133 60 60 chr4 92842928 92843007 -109485340 - LTR49 LTR ERV1 -516 79 1 1300 159 76 23 chr4 92843090 92843332 -109485015 + L1MD3 LINE L1 7712 7971 -24 2269 102 7 3 chr4 92843332 92843626 -109484721 + AluSc SINE Alu 1 295 -14 1300 159 76 23 chr4 92843626 92843647 -109484700 + L1MD3 LINE L1 7971 7989 -6 2070 180 27 16 chr4 92843833 92844282 -109484065 + LTR56 LTR ERV1 8 436 -1 255 229 220 8 chr4 92844699 92844817 -109483530 + L1ME4a LINE L1 5970 6112 -9 2344 104 0 0 chr4 92844988 92845287 -109483060 + AluSg SINE Alu 1 299 -11 590 255 16 57 chr4 92845951 92846143 -109482204 + MIR SINE MIR 41 224 -38 2766 151 108 38 chr4 92846466 92847021 -109481326 + LTR49 LTR ERV1 2 595 0 234 387 77 54 chr4 92847197 92847533 -109480814 + L2 LINE L2 2927 3270 -2 3543 116 41 5 chr4 92847577 92848171 -109480176 - MER4B LTR ERV1 0 779 1 377 259 99 8 chr4 92848217 92848348 -109479999 + MIR SINE MIR 63 205 -57 216 394 30 10 chr4 92848398 92848497 -109479850 + L2 LINE L2 3197 3297 -16 1418 205 4 4 chr4 92848502 92848770 -109479577 + AluJo SINE Alu 5 272 -40 917 131 0 0 chr4 92848795 92848925 -109479422 - AluSg/x SINE Alu -10 300 171 1284 92 0 49 chr4 92849088 92849272 -109479075 - AluSq SINE Alu -138 175 1 1540 167 62 14 chr4 92849465 92849741 -109478606 - MLT1A1 LTR MaLR -76 289 1 1602 206 21 0 chr4 92849790 92849900 -109478447 + AluJo SINE Alu 11 117 -195 267 79 0 0 chr4 92849900 92849938 -109478409 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1602 206 21 0 chr4 92849938 92850114 -109478233 + AluJo SINE Alu 117 303 -9 5232 152 33 14 chr4 92850147 92850995 -109477352 - MER6 DNA MER2_type 0 865 2 242 271 24 24 chr4 92851283 92851368 -109476979 - L1ME LINE L1 -420 5701 5617 628 212 28 92 chr4 92851422 92851562 -109476785 - L1MC5 LINE L1 -54 7907 7788 2172 118 0 3 chr4 92851562 92851858 -109476489 - AluSx SINE Alu -17 295 1 628 212 28 92 chr4 92851858 92851967 -109476380 - L1MC5 LINE L1 -173 7788 7674 363 290 134 29 chr4 92851993 92852269 -109476078 - L1ME LINE L1 -2191 5617 5313 1111 230 80 75 chr4 92852418 92852871 -109475476 - MSTB2 LTR MaLR 0 457 3 8421 97 107 96 chr4 92852871 92854547 -109473800 + pTR5 LTR ERV1 743 2438 0 758 160 0 0 chr4 92854585 92854704 -109473643 + L1MC1 LINE L1 6080 6198 -135 288 178 0 0 chr4 92854710 92854755 -109473592 + L1 LINE L1 1017 1061 -6504 * 6525 210 7 5 chr4 92854753 92856131 -109472216 + L1 LINE L1 3578 4957 -2608 6385 205 23 67 chr4 92856126 92856700 -109471647 + L1 LINE L1 2359 2957 -3189 * 1042 166 6 12 chr4 92856700 92856869 -109471478 + AluJb SINE Alu 118 285 -27 6385 205 23 67 chr4 92856869 92857812 -109470535 + L1 LINE L1 2957 3940 -2206 1469 188 25 14 chr4 92857812 92858088 -109470259 + AluJo SINE Alu 2 280 -32 213 39 0 0 chr4 92858093 92858119 -109470228 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6385 205 23 67 chr4 92858119 92858596 -109469751 + L1 LINE L1 3944 4345 -1801 192 40 0 0 chr4 92858639 92858664 -109469683 + (TATG)n Simple_repeat Simple_repeat 4 28 0 641 177 0 40 chr4 92858665 92858789 -109469558 - AluJb SINE Alu -22 290 172 1543 215 11 101 chr4 92858835 92858994 -109469353 + MER65A-int LTR ERV1 4397 4569 -302 2332 89 7 3 chr4 92858994 92859296 -109469051 - AluSc SINE Alu -2 307 5 1543 215 11 101 chr4 92859296 92859592 -109468755 + MER65A-int LTR ERV1 4569 4811 -60 322 273 0 0 chr4 92859622 92859699 -109468648 + MER65A-int LTR ERV1 4795 4871 0 2430 158 43 40 chr4 92859699 92860143 -109468204 + MER65A LTR ERV1 1 445 0 1563 174 9 59 chr4 92860793 92861115 -109467232 - AluJo SINE Alu -6 306 1 340 383 9 39 chr4 92861123 92861460 -109466887 - L1ME3A LINE L1 -233 5937 5611 1348 162 96 44 chr4 92861463 92861634 -109466713 - AluJo SINE Alu -10 302 110 2357 119 24 34 chr4 92861634 92862013 -109466334 + THE1C LTR MaLR 1 375 0 1348 162 96 44 chr4 92862013 92862113 -109466234 - AluJo SINE Alu -202 110 17 3272 159 31 60 chr4 92862133 92862508 -109465839 - L1MB8 LINE L1 -1 6177 5793 2089 119 40 7 chr4 92862508 92862810 -109465537 - AluSx SINE Alu 0 312 1 3272 159 31 60 chr4 92862810 92862949 -109465398 - L1MB8 LINE L1 -385 5793 5652 1240 205 65 45 chr4 92862949 92863286 -109465061 + MER2 DNA MER2_type 1 344 0 3272 159 31 60 chr4 92863286 92863473 -109464874 - L1MB8 LINE L1 -526 5652 5495 1018 185 169 0 chr4 92863483 92863610 -109464737 - MER21B LTR ERV1 -1 862 758 192 40 0 0 chr4 92863610 92863635 -109464712 + (CAATT)n Simple_repeat Simple_repeat 2 26 0 1018 185 169 0 chr4 92863635 92863756 -109464591 - MER21B LTR ERV1 -105 758 572 540 173 43 2 chr4 92863776 92863946 -109464401 - MER21B LTR ERV1 -646 217 5 953 143 17 6 chr4 92863952 92864127 -109464220 - L1MB8 LINE L1 -681 5497 5321 2486 61 0 3 chr4 92864141 92864437 -109463910 + AluY SINE Alu 1 295 -16 242 229 33 16 chr4 92914665 92914726 -109413621 - MER3 DNA MER1_type -147 62 1 2284 103 7 0 chr4 92914778 92915078 -109413269 - AluSx SINE Alu -10 302 1 1866 152 20 7 chr4 92916239 92916542 -109411805 - AluJb SINE Alu -5 307 1 322 254 48 40 chr4 92916607 92916733 -109411614 + L1M LINE L1 5298 5424 -2384 227 77 0 26 chr4 92916908 92916947 -109411400 + (TTTC)n Simple_repeat Simple_repeat 1 38 0 2035 137 0 28 chr4 92916949 92917270 -109411077 - AluJo SINE Alu 0 312 1 21 95 0 0 chr4 92918652 92918715 -109409632 + AT_rich Low_complexity Low_complexity 1 63 0 193 167 0 0 chr4 92918715 92918745 -109409602 - L2 LINE L2 -19 3294 3265 1545 166 72 4 chr4 92918903 92919181 -109409166 + AluJo SINE Alu 1 297 -15 2215 105 0 0 chr4 92919183 92919477 -109408870 + AluSg SINE Alu 1 294 -16 27 49 0 0 chr4 92919535 92919576 -109408771 + AT_rich Low_complexity Low_complexity 1 41 0 2048 107 23 20 chr4 92919718 92920017 -109408330 + AluSx SINE Alu 1 300 -12 2010 133 0 26 chr4 92920558 92920866 -109407481 - AluSx SINE Alu -11 301 2 70 0 0 0 chr4 92920874 92920944 -109407403 + AT_rich Low_complexity Low_complexity 1 70 0 555 64 13 0 chr4 92921078 92921156 -109407191 + Alu SINE Alu 231 309 -2 307 173 148 12 chr4 92921606 92921687 -109406660 + MIR SINE MIR 49 140 -68 189 254 0 34 chr4 92921690 92921749 -109406598 - MIR SINE MIR -51 211 155 193 272 37 88 chr4 92921798 92921866 -109406481 + MIR SINE MIR 16 75 -133 2141 86 6 16 chr4 92921866 92922180 -109406167 - AluY SINE Alu 0 311 1 193 272 37 88 chr4 92922180 92922247 -109406100 + MIR SINE MIR 75 144 -64 188 371 67 9 chr4 92922510 92922615 -109405732 - L2 LINE L2 -9 3263 3153 498 269 129 21 chr4 92922897 92923184 -109405163 - L1ME3 LINE L1 -184 5980 5663 960 201 21 10 chr4 92923196 92923390 -109404957 - MER3 DNA MER1_type 0 209 14 626 301 25 0 chr4 92923475 92923671 -109404676 - L1ME3 LINE L1 -510 5652 5452 379 233 167 56 chr4 92924619 92924799 -109403548 - MIR SINE MIR -6 256 57 482 232 87 36 chr4 92926019 92926157 -109402190 + MIR SINE MIR 100 244 -18 300 206 0 29 chr4 92926203 92926271 -109402076 - MLT1K LTR MaLR -2 586 521 838 226 23 0 chr4 92926310 92926487 -109401860 + MER82 DNA MER2_type 24 204 -449 762 136 24 8 chr4 92926780 92926905 -109401442 + MER82 DNA MER2_type 203 329 -324 630 196 0 110 chr4 92927598 92927771 -109400576 + AluSg/x SINE Alu 156 309 -3 2309 88 0 0 chr4 92927939 92928233 -109400114 + AluY SINE Alu 1 294 -17 26 50 0 0 chr4 92928348 92928388 -109399959 + AT_rich Low_complexity Low_complexity 1 40 0 252 0 0 0 chr4 92928829 92928857 -109399490 + (CA)n Simple_repeat Simple_repeat 1 28 0 3794 200 70 19 chr4 92929107 92929967 -109398380 - L1ME1 LINE L1 -5 6161 5258 666 182 145 13 chr4 92929978 92930137 -109398210 - MLT1A2 LTR MaLR 0 374 195 447 281 59 25 chr4 92932231 92932434 -109395913 - MIR SINE MIR -1 261 50 644 227 135 22 chr4 92933634 92933863 -109394484 - MIR SINE MIR -3 259 5 480 228 10 127 chr4 92935128 92935260 -109393087 + MER5B DNA MER1_type 5 108 -70 443 177 186 9 chr4 92935260 92935373 -109392974 - FLAM_A SINE Alu 0 133 1 480 228 10 127 chr4 92935373 92935437 -109392910 + MER5B DNA MER1_type 108 178 0 288 188 14 29 chr4 92935711 92935780 -109392567 + L1ME4a LINE L1 5986 6053 -68 23 0 0 0 chr4 92936494 92936517 -109391830 + AT_rich Low_complexity Low_complexity 1 23 0 623 251 146 10 chr4 92938191 92938390 -109389957 - MIR SINE MIR -31 231 6 2147 92 3 36 chr4 92938508 92938813 -109389534 - AluJb SINE Alu -17 295 1 1411 228 69 18 chr4 92939124 92939458 -109388889 + L1M4b LINE L1 11 361 -6498 386 254 118 41 chr4 92939642 92939862 -109388485 + L1M4b LINE L1 2471 2707 -4431 2160 119 7 0 chr4 92939917 92940219 -109388128 - AluSx SINE Alu -8 304 1 3341 171 16 48 chr4 92940268 92940812 -109387535 + L1MB8 LINE L1 5523 6044 -134 1684 121 14 57 chr4 92940812 92941093 -109387254 + AluJo SINE Alu 34 302 -10 3341 171 16 48 chr4 92941093 92941220 -109387127 + L1MB8 LINE L1 6044 6173 -5 188 371 22 0 chr4 92941256 92941345 -109387002 - MIR SINE MIR -84 124 34 2374 64 0 7 chr4 92941865 92942161 -109386186 - AluY SINE Alu 0 311 18 1201 23 0 0 chr4 92942161 92942286 -109386061 - AluY SINE Alu -183 128 1 198 311 54 0 chr4 92942763 92942837 -109385510 - L2 LINE L2 -339 2975 2898 2765 133 118 8 chr4 92942845 92943343 -109385004 + MER7C DNA MER2_type 2 554 -48 2155 164 14 16 chr4 92943585 92943951 -109384396 - MLT1A1 LTR MaLR 0 365 1 582 329 34 31 chr4 92944635 92944960 -109383387 + L1ME4a LINE L1 5552 5877 -244 2535 73 3 3 chr4 92945002 92945315 -109383032 - AluSp SINE Alu 0 313 1 709 167 0 0 chr4 92947603 92947705 -109380642 + FLAM_A SINE Alu 25 126 -16 315 122 0 0 chr4 92947717 92947766 -109380581 + (TG)n Simple_repeat Simple_repeat 2 50 0 1508 142 31 23 chr4 92947771 92948032 -109380315 - AluJo SINE Alu -36 276 14 253 267 207 67 chr4 92948116 92948251 -109380096 + L2 LINE L2 3117 3270 -2 2121 106 3 0 chr4 92948643 92948935 -109379412 + AluSx SINE Alu 1 293 -19 2428 64 3 13 chr4 92948937 92949249 -109379098 + AluY SINE Alu 3 311 0 2093 130 0 22 chr4 92949534 92949849 -109378498 - AluSx SINE Alu -4 308 1 22 0 0 0 chr4 92950635 92950657 -109377690 + GC_rich Low_complexity Low_complexity 1 22 0 204 225 0 0 chr4 92951893 92951933 -109376414 + (TG)n Simple_repeat Simple_repeat 2 41 0 1385 153 0 58 chr4 92953067 92953342 -109375005 - AluSx SINE Alu -21 291 33 1201 84 0 7 chr4 92953476 92953631 -109374716 + AluSq SINE Alu 1 154 -159 64 0 0 0 chr4 92953731 92953795 -109374552 + AT_rich Low_complexity Low_complexity 1 64 0 591 144 52 0 chr4 92953803 92953900 -109374447 - FLAM_C SINE Alu -40 103 2 287 329 13 0 chr4 92954218 92954294 -109374053 + LTR67 LTR ERVL 114 190 -367 252 252 8 73 chr4 92954522 92954645 -109373702 + LTR33A LTR ERVL 406 520 -3 199 250 147 0 chr4 92954648 92954716 -109373631 + MIR SINE MIR 159 236 -26 2597 166 18 36 chr4 92954729 92955235 -109373112 - MLT2B1 LTR ERVL -23 497 1 2064 163 44 31 chr4 92955449 92955992 -109372355 - MLT2A2 LTR ERVL 0 554 1 405 269 144 12 chr4 92956606 92956766 -109371581 - MER5A DNA MER1_type 0 189 9 1079 177 84 5 chr4 92956782 92956985 -109371362 + MER20 DNA MER1_type 1 219 0 214 309 125 0 chr4 92958039 92958191 -109370156 + L2 LINE L2 2330 2500 -814 553 207 45 81 chr4 92958216 92958414 -109369933 - MLT1A2 LTR MaLR -183 191 1 414 350 46 89 chr4 92958627 92959022 -109369325 + L2 LINE L2 2723 3091 -181 180 0 0 0 chr4 92959022 92959042 -109369305 + (CTCA)n Simple_repeat Simple_repeat 2 21 0 414 350 46 89 chr4 92959042 92959214 -109369133 + L2 LINE L2 3091 3269 -3 2203 206 102 52 chr4 92959475 92960171 -109368176 - L1MC4 LINE L1 -17 8025 7295 1658 128 46 36 chr4 92960900 92961102 -109367245 - MLT1B LTR MaLR -2 388 180 2499 66 7 0 chr4 92961102 92961405 -109366942 - AluY SINE Alu -6 305 1 1658 128 46 36 chr4 92961405 92961508 -109366839 - MLT1B LTR MaLR -210 180 80 38263 89 13 8 chr4 92961515 92967618 -109360729 + L1PA6 LINE L1 11 6146 -8 515 160 21 11 chr4 92967618 92967712 -109360635 - MLT1B LTR MaLR -295 95 1 558 71 0 47 chr4 92967753 92967838 -109360509 + L1MA1 LINE L1 6222 6302 0 23 33 0 0 chr4 92967843 92967873 -109360474 + AT_rich Low_complexity Low_complexity 1 30 0 1273 223 44 20 chr4 92967990 92968286 -109360061 - AluJo SINE Alu -7 305 3 385 200 56 0 chr4 92968563 92968653 -109359694 - MLT1I LTR MaLR -2 407 313 257 257 0 0 chr4 92968653 92968723 -109359624 + MER116 DNA Mariner 1 70 -10 496 271 186 32 chr4 92968735 92968982 -109359365 - MLT1I LTR MaLR -97 312 28 315 122 0 0 chr4 92969046 92969095 -109359252 + (TTCC)n Simple_repeat Simple_repeat 2 50 0 950 138 0 14 chr4 92969097 92969242 -109359105 - AluJb SINE Alu -37 275 133 4502 165 29 57 chr4 92969902 92970216 -109358131 - L1MB8 LINE L1 -5 6173 5852 1890 172 0 0 chr4 92970216 92970518 -109357829 - AluSx SINE Alu -10 302 1 4502 165 29 57 chr4 92970518 92971222 -109357125 - L1MB8 LINE L1 -326 5852 5184 2313 90 0 3 chr4 92971222 92971523 -109356824 - AluY SINE Alu -11 300 1 4502 165 29 57 chr4 92971523 92971792 -109356555 - L1MB8 LINE L1 -994 5184 4909 1998 168 42 6 chr4 92971898 92972255 -109356092 - L1PA16 LINE L1 -20 6146 5777 842 145 0 0 chr4 92972255 92972386 -109355961 - AluSx SINE Alu 0 312 182 12140 18 5 0 chr4 92972779 92974856 -109353491 + L1PA3 LINE L1 4073 6155 0 1250 161 0 0 chr4 92974929 92975115 -109353232 - AluSx SINE Alu -126 186 1 292 102 0 61 chr4 92975115 92975164 -109353183 - L1PA16 LINE L1 -386 5780 5735 1126 122 12 12 chr4 92976232 92976396 -109351951 - AluSc SINE Alu -145 164 1 487 68 0 0 chr4 92976431 92976490 -109351857 + AluSg/x SINE Alu 189 247 -62 2036 119 7 7 chr4 92976628 92976921 -109351426 + AluSc SINE Alu 6 298 -11 2425 82 10 0 chr4 92977562 92977868 -109350479 + AluSc SINE Alu 1 309 0 187 395 58 9 chr4 92979139 92979362 -109348985 + L2 LINE L2 2572 2805 -509 578 195 0 26 chr4 92979362 92979475 -109348872 - FLAM_C SINE Alu -6 137 28 232 288 0 0 chr4 92979641 92979700 -109348647 + CT-rich Low_complexity Low_complexity 5 63 0 212 291 0 0 chr4 92980066 92980121 -109348226 + (TA)n Simple_repeat Simple_repeat 2 56 0 4784 92 1 29 chr4 92980228 92980333 -109348014 + L1PB2 LINE L1 5506 5612 -539 2307 92 0 43 chr4 92980333 92980659 -109347688 + AluSp SINE Alu 2 313 0 4784 92 1 29 chr4 92980659 92981215 -109347132 + L1PB2 LINE L1 5612 6149 -2 2453 59 0 16 chr4 92981239 92981543 -109346804 + AluY SINE Alu 1 299 -12 4378 190 26 29 chr4 92981581 92981665 -109346682 - L1MA9 LINE L1 -38 6274 6191 1128 23 78 0 chr4 92981665 92981793 -109346554 + MER85 DNA T2_type 2 139 0 4378 190 26 29 chr4 92981793 92982511 -109345836 - L1MA9 LINE L1 -121 6191 5473 2458 95 0 0 chr4 92982511 92982817 -109345530 - AluSx SINE Alu -6 306 1 4378 190 26 29 chr4 92982817 92983707 -109344640 - L1MA9 LINE L1 -839 5473 4588 21 0 0 0 chr4 92983864 92983885 -109344462 + AT_rich Low_complexity Low_complexity 1 21 0 14502 151 33 27 chr4 92983928 92986217 -109342130 - L1MA3 LINE L1 -5 7719 5444 2305 84 7 7 chr4 92986217 92986515 -109341832 - AluSq SINE Alu -15 298 1 14502 151 33 27 chr4 92986515 92988529 -109339818 - L1MA3 LINE L1 -2280 5444 3442 2007 72 7 0 chr4 92988529 92988805 -109339542 - L1PA13 LINE L1 -3 6160 5883 14502 151 33 27 chr4 92988805 92989337 -109339010 - L1MA3 LINE L1 -4282 3442 2914 1790 198 3 0 chr4 92989337 92989645 -109338702 - AluJb SINE Alu -3 309 1 14502 151 33 27 chr4 92989645 92992110 -109336237 - L1MA3 LINE L1 -4810 2914 17 293 290 140 0 chr4 92993094 92993194 -109335153 - L2 LINE L2 -1 3312 3199 389 230 81 106 chr4 92993202 92993307 -109335040 - MIR SINE MIR -5 257 151 1977 78 68 18 chr4 92993307 92993614 -109334733 - AluY SINE Alu 0 311 1 888 221 0 12 chr4 92993619 92993791 -109334556 - FAM SINE Alu -5 170 1 389 230 81 106 chr4 92993791 92993840 -109334507 - MIR SINE MIR -115 147 101 1740 124 7 0 chr4 92994426 92994699 -109333648 + MLT1B LTR MaLR 1 275 -115 1839 159 10 16 chr4 92994699 92995007 -109333340 + AluJo SINE Alu 2 307 -5 2143 114 10 3 chr4 92995085 92995375 -109332972 + AluSc SINE Alu 1 292 -17 3092 145 35 12 chr4 92996963 92997529 -109330818 - L1MB3 LINE L1 -2 6181 5603 347 264 91 16 chr4 92998402 92998523 -109329824 - L2 LINE L2 0 3313 3184 944 280 95 41 chr4 92998529 92999165 -109329182 + L2 LINE L2 2367 3053 -219 195 184 0 0 chr4 93000138 93000176 -109328171 + (TATG)n Simple_repeat Simple_repeat 3 40 0 299 257 9 71 chr4 93000404 93000517 -109327830 - MIR3 SINE MIR -3 205 100 230 234 16 31 chr4 93000541 93000605 -109327742 - L2 LINE L2 0 3313 3251 2239 113 3 0 chr4 93000858 93001158 -109327189 + AluSq SINE Alu 1 301 -12 463 335 68 6 chr4 93001251 93001427 -109326920 - MIR SINE MIR -28 234 48 2043 117 3 21 chr4 93001659 93001791 -109326556 + AluSx SINE Alu 1 134 -178 180 0 0 0 chr4 93001791 93001811 -109326536 + (TA)n Simple_repeat Simple_repeat 2 21 0 2043 117 3 21 chr4 93001811 93001995 -109326352 + AluSx SINE Alu 134 312 0 1193 202 49 22 chr4 93002228 93002660 -109325687 + MLT1D LTR MaLR 5 503 -2 1914 120 41 14 chr4 93002803 93003095 -109325252 + AluSq SINE Alu 3 302 -11 2102 101 10 27 chr4 93003848 93004164 -109324183 - AluSq SINE Alu 0 311 1 828 127 0 0 chr4 93004192 93004310 -109324037 - AluJb SINE Alu -194 118 1 22 0 0 0 chr4 93004781 93004803 -109323544 + AT_rich Low_complexity Low_complexity 1 22 0 3252 167 81 25 chr4 93004903 93005633 -109322714 + LTR48 LTR ERV1 1 771 -16 2180 124 0 16 chr4 93005714 93006021 -109322326 + AluSc SINE Alu 1 302 -7 246 274 26 44 chr4 93006403 93006516 -109321831 - 7SK RNA RNA -67 126 16 1191 183 46 5 chr4 93006568 93006787 -109321560 - MLT1C LTR MaLR 0 467 240 435 153 133 0 chr4 93006784 93006882 -109321465 - MLT1C LTR MaLR -348 119 9 * 613 197 23 25 chr4 93007026 93007223 -109321124 + MSTC LTR MaLR 1 194 -171 2808 7 0 0 chr4 93007550 93007854 -109320493 + AluYa5 SINE Alu 1 304 -7 2185 117 3 7 chr4 93007894 93008202 -109320145 + AluSx SINE Alu 1 307 -5 1778 185 3 7 chr4 93008263 93008555 -109319792 - AluJo SINE Alu -21 291 1 2389 88 3 0 chr4 93008974 93009282 -109319065 - AluSq SINE Alu -4 309 1 2334 173 123 29 chr4 93009762 93009799 -109318548 - L1MB8 LINE L1 -11 6167 6135 2222 102 7 0 chr4 93009799 93010094 -109318253 - AluSp SINE Alu -16 297 1 2334 173 123 29 chr4 93010094 93010681 -109317666 - L1MB8 LINE L1 -43 6135 5484 28 0 0 0 chr4 93011531 93011559 -109316788 + AT_rich Low_complexity Low_complexity 1 28 0 1136 142 0 0 chr4 93012015 93012184 -109316163 - AluSg/x SINE Alu 0 312 144 2200 119 76 15 chr4 93012291 93012634 -109315713 - THE1B LTR MaLR 0 364 1 234 91 0 0 chr4 93012948 93012981 -109315366 + (TG)n Simple_repeat Simple_repeat 1 33 0 1616 173 3 50 chr4 93013221 93013544 -109314803 - AluSx SINE Alu -4 308 1 1565 183 37 17 chr4 93014787 93015087 -109313260 + AluJo SINE Alu 6 311 -1 23 0 0 0 chr4 93015091 93015114 -109313233 + AT_rich Low_complexity Low_complexity 1 23 0 393 331 22 0 chr4 93015252 93015388 -109312959 + MIR3 SINE MIR 7 145 -63 4029 82 9 23 chr4 93015486 93015948 -109312399 - MER41A LTR ERV1 0 554 100 2343 83 0 3 chr4 93015948 93016250 -109312097 + AluSg SINE Alu 1 301 -9 4029 82 9 23 chr4 93016250 93016348 -109311999 - MER41A LTR ERV1 -454 100 2 216 0 0 0 chr4 93018066 93018090 -109310257 + (TG)n Simple_repeat Simple_repeat 1 24 0 212 270 14 27 chr4 93019953 93020027 -109308320 - MIR SINE MIR -46 216 144 666 260 57 0 chr4 93021360 93021537 -109306810 + MIR SINE MIR 76 262 0 285 170 0 0 chr4 93021575 93021622 -109306725 - U6 snRNA snRNA -60 47 1 243 0 0 0 chr4 93022429 93022456 -109305891 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 274 281 175 19 chr4 93022465 93022625 -109305722 - MLT1L LTR MaLR 0 615 431 483 108 0 0 chr4 93022886 93022960 -109305387 + FLAM_C SINE Alu 70 143 0 2434 85 0 0 chr4 93023351 93023656 -109304691 + AluY SINE Alu 1 305 -6 249 316 104 30 chr4 93025125 93025955 -109302392 + L1ME LINE L1 4872 5776 -345 1366 268 154 47 chr4 93025975 93026876 -109301471 + L2 LINE L2 2203 3289 -24 2194 103 7 0 chr4 93026876 93027166 -109301181 - AluSx SINE Alu -20 292 1 1366 268 154 47 chr4 93027166 93027194 -109301153 + L2 LINE L2 3289 3313 0 3697 157 17 6 chr4 93027729 93028379 -109299968 - L1MB8 LINE L1 0 6178 5522 2293 104 3 0 chr4 93028409 93028707 -109299640 + AluSg SINE Alu 1 299 -11 617 198 0 0 chr4 93028718 93028834 -109299513 + MIR SINE MIR 147 262 0 230 272 141 41 chr4 93028890 93029043 -109299304 - MER5A DNA MER1_type -11 178 1 230 252 25 134 chr4 93029244 93029363 -109298984 + L2 LINE L2 3001 3106 -166 7099 223 79 49 chr4 93029558 93031975 -109296372 - L1ME1 LINE L1 -5 6161 3820 716 199 8 0 chr4 93031975 93032106 -109296241 - FLAM_A SINE Alu -1 132 1 7099 223 79 49 chr4 93032106 93032238 -109296109 - L1ME1 LINE L1 -2346 3820 3694 481 126 63 0 chr4 93032238 93032333 -109296014 - L1MA9 LINE L1 0 6312 6212 7099 223 79 49 chr4 93032333 93033014 -109295333 - L1ME1 LINE L1 -2472 3694 3035 1370 179 91 46 chr4 93033014 93033343 -109295004 - MER2 DNA MER2_type 0 344 1 7099 223 79 49 chr4 93033343 93033381 -109294966 - L1ME1 LINE L1 -3131 3035 3000 2254 113 0 3 chr4 93033381 93033682 -109294665 + AluSq SINE Alu 1 300 -13 7099 223 79 49 chr4 93033682 93034285 -109294062 - L1ME1 LINE L1 -3166 3000 2146 1596 152 64 0 chr4 93034644 93034908 -109293439 + AluSx SINE Alu 1 281 -31 617 132 0 0 chr4 93034817 93034908 -109293439 + AluSg/x SINE Alu 188 299 0 190 0 0 0 chr4 93034908 93034929 -109293418 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 511 252 135 51 chr4 93034945 93035278 -109293069 - L1ME4a LINE L1 -11 6110 5750 288 295 18 0 chr4 93035286 93035398 -109292949 - L1ME4a LINE L1 -458 5663 5550 2184 118 10 7 chr4 93036929 93037226 -109291121 + AluSx SINE Alu 1 298 -14 225 310 0 0 chr4 93037640 93037711 -109290636 + L1ME1 LINE L1 523 593 -5937 3615 230 132 13 chr4 93038092 93039696 -109288651 + L1ME1 LINE L1 1016 2814 -3726 2582 154 52 2 chr4 93039700 93040179 -109288168 + L1PA8 LINE L1 1 503 -5372 25212 142 14 19 chr4 93040185 93042611 -109285736 + L1PA8 LINE L1 772 3209 -3278 1935 142 24 0 chr4 93042611 93042899 -109285448 + AluSx SINE Alu 1 295 -17 2238 89 0 3 chr4 93042901 93043203 -109285144 + AluY SINE Alu 1 301 0 25212 142 14 19 chr4 93043203 93046503 -109281844 + L1PA8 LINE L1 3210 6485 -2 2943 244 35 40 chr4 93046498 93047593 -109280754 + L1ME1 LINE L1 2801 3891 -2649 * 2069 117 3 41 chr4 93047593 93047910 -109280437 + AluSx SINE Alu 1 305 -7 2943 244 35 40 chr4 93047910 93047995 -109280352 + L1ME1 LINE L1 3891 3975 -2565 3355 244 46 40 chr4 93048025 93048221 -109280126 + L1ME1 LINE L1 4262 4455 -2085 1537 206 25 25 chr4 93048221 93048580 -109279767 - MLT1A1 LTR MaLR -2 363 5 3355 244 46 40 chr4 93048580 93049656 -109278691 + L1ME1 LINE L1 4455 5541 -999 2895 220 60 33 chr4 93049685 93050529 -109277818 + L1ME1 LINE L1 5677 6543 -17 654 143 0 0 chr4 93051265 93051363 -109276984 - Tigger7 DNA MER2_type -1 2486 2389 * 1501 176 23 0 chr4 93051361 93051622 -109276725 - Tigger7 DNA MER2_type -2220 267 1 405 241 169 42 chr4 93051791 93051957 -109276390 + MIR SINE MIR 1 187 -75 441 214 110 64 chr4 93053502 93053875 -109274472 - HAL1 LINE L1 -72 2435 2046 2099 235 129 48 chr4 93054024 93055106 -109273241 - HAL1 LINE L1 -703 1804 635 488 293 88 10 chr4 93057114 93057319 -109271028 + MIR SINE MIR 9 229 -33 1548 92 5 14 chr4 93057437 93057644 -109270703 - AluSx SINE Alu -107 205 1 588 266 298 19 chr4 93058888 93059714 -109268633 - L2 LINE L2 -3 3310 2264 354 164 49 0 chr4 93060105 93060227 -109268120 + (TA)n Simple_repeat Simple_repeat 1 128 0 30 45 0 0 chr4 93060265 93060309 -109268038 + AT_rich Low_complexity Low_complexity 1 44 0 2536 146 14 14 chr4 93061972 93062398 -109265949 - MSTB LTR MaLR 0 426 1 487 267 58 17 chr4 93062511 93062678 -109265669 - MIR SINE MIR -62 146 12 266 365 43 0 chr4 93062968 93063083 -109265264 + L2 LINE L2 3149 3268 -4 194 248 124 29 chr4 93063465 93063570 -109264777 - L2 LINE L2 -234 3038 2924 23 0 0 0 chr4 93063950 93063973 -109264374 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr4 93064432 93064465 -109263882 + AT_rich Low_complexity Low_complexity 1 33 0 2203 101 3 10 chr4 93065937 93066234 -109262113 - AluSx SINE Alu -17 295 1 222 91 0 0 chr4 93066445 93066478 -109261869 + (TG)n Simple_repeat Simple_repeat 2 34 0 913 152 79 0 chr4 93066506 93066671 -109261676 - MER5B DNA MER1_type 0 178 1 775 237 88 12 chr4 93067697 93067946 -109260401 - LTR16A LTR ERVL -8 442 175 309 277 43 0 chr4 93069160 93069254 -109259093 + MIR3 SINE MIR 102 199 -9 893 208 0 7 chr4 93069973 93070127 -109258220 + FAM SINE Alu 15 167 -18 31 0 0 0 chr4 93070464 93070495 -109257852 + AT_rich Low_complexity Low_complexity 1 31 0 2829 174 29 6 chr4 93070894 93071418 -109256929 - MLT2B3 LTR ERVL -17 537 2 1067 159 62 10 chr4 93071625 93071833 -109256514 + MER20 DNA MER1_type 1 219 0 373 285 32 8 chr4 93073403 93073526 -109254821 + L2 LINE L2 3186 3311 -2 332 241 66 80 chr4 93074815 93075027 -109253320 - L1MC5 LINE L1 -31 7930 7722 479 232 116 28 chr4 93076188 93076223 -109252124 + Charlie8 DNA MER1_type 68 98 -2319 1357 140 12 16 chr4 93076223 93076466 -109251881 + L1MB2 LINE L1 5930 6171 0 479 232 116 28 chr4 93076466 93076611 -109251736 + Charlie8 DNA MER1_type 98 264 -2153 2029 141 0 0 chr4 93077261 93077552 -109250795 - AluJb SINE Alu -21 291 1 236 344 172 18 chr4 93077709 93077872 -109250475 - MIR3 SINE MIR -3 205 18 545 284 133 27 chr4 93078335 93078560 -109249787 + MIR SINE MIR 4 252 -10 209 321 104 28 chr4 93078561 93078667 -109249680 - L2 LINE L2 -9 3263 3150 26 30 0 0 chr4 93079468 93079501 -109248846 + AT_rich Low_complexity Low_complexity 1 33 0 186 43 0 0 chr4 93081527 93081550 -109246797 + (TG)n Simple_repeat Simple_repeat 2 24 0 1266 202 29 48 chr4 93082368 93082592 -109245755 - MER58B DNA MER1_type -2114 306 88 2106 111 21 0 chr4 93082592 93082880 -109245467 + AluSg SINE Alu 2 295 -15 1266 202 29 48 chr4 93082880 93082967 -109245380 - MER58B DNA MER1_type -2332 88 1 24 67 0 0 chr4 93083031 93083076 -109245271 + AT_rich Low_complexity Low_complexity 1 45 0 282 306 0 0 chr4 93084353 93084415 -109243932 + L2 LINE L2 3244 3305 -8 365 204 176 0 chr4 93084822 93084930 -109243417 + MIR SINE MIR 112 238 -24 2231 81 14 3 chr4 93085253 93085548 -109242799 - AluSq SINE Alu -15 298 1 763 237 5 0 chr4 93086461 93086651 -109241696 - MER3 DNA MER1_type -18 191 1 670 224 7 13 chr4 93087250 93087402 -109240945 + MER8 DNA MER2_type 11 161 -78 1140 186 60 0 chr4 93087419 93087688 -109240659 - L1MA4 LINE L1 -3 6297 6013 302 246 0 0 chr4 93087694 93087759 -109240588 + MER2 DNA MER2_type 281 345 0 1274 146 49 8 chr4 93087767 93088013 -109240334 - L1M4 LINE L1 -360 5818 5563 26 0 0 0 chr4 93088022 93088048 -109240299 + AT_rich Low_complexity Low_complexity 1 26 0 6909 35 4 0 chr4 93088055 93088937 -109239410 - L1PA4 LINE L1 -2 6153 5268 942 151 26 0 chr4 93089524 93089676 -109238671 - MER30B DNA MER1_type 0 230 75 7042 47 5 27 chr4 93089676 93090577 -109237770 + L1PA8 LINE L1 4467 5331 -845 978 9 0 0 chr4 93090577 93090684 -109237663 - U6 snRNA snRNA 0 107 1 7042 47 5 27 chr4 93090684 93091513 -109236834 + L1PA8 LINE L1 5331 6176 0 618 71 0 0 chr4 93091888 93091972 -109236375 - MER30B DNA MER1_type -106 84 1 22 35 0 0 chr4 93093097 93093126 -109235221 + AT_rich Low_complexity Low_complexity 1 29 0 476 252 79 34 chr4 93093191 93093390 -109234957 + MIR SINE MIR 16 212 -50 263 261 46 0 chr4 93093424 93093489 -109234858 + L2 LINE L2 3246 3313 0 249 224 179 0 chr4 93093682 93093749 -109234598 - L2 LINE L2 -4 3268 3190 400 301 236 36 chr4 93094041 93094426 -109233921 - L2 LINE L2 -571 2743 2282 1625 164 3 86 chr4 93094952 93095276 -109233071 + AluJb SINE Alu 1 297 -15 2271 108 0 0 chr4 93095309 93095605 -109232742 - AluSx SINE Alu -16 296 1 277 316 0 0 chr4 93096451 93096549 -109231798 + CT-rich Low_complexity Low_complexity 1 98 0 809 213 34 38 chr4 93097082 93097317 -109231030 - MLT1A1 LTR MaLR -12 353 120 518 186 264 67 chr4 93098362 93098555 -109229792 - MIR SINE MIR -10 252 22 727 78 29 0 chr4 93099274 93099376 -109228971 + L1MB5 LINE L1 6062 6166 -8 209 256 0 0 chr4 93099379 93099422 -109228925 + (TG)n Simple_repeat Simple_repeat 1 43 0 329 287 76 53 chr4 93100390 93100711 -109227636 - L1M4 LINE L1 -1537 4609 4223 884 246 18 14 chr4 93101400 93101620 -109226727 - MIR SINE MIR 0 262 42 417 122 0 0 chr4 93103007 93103081 -109225266 + (TCC)n Simple_repeat Simple_repeat 1 74 0 186 103 0 0 chr4 93103412 93103441 -109224906 + (CCG)n Simple_repeat Simple_repeat 2 30 0 570 309 181 31 chr4 93104004 93104357 -109223990 - MER115 DNA AcHobo -277 416 11 468 313 0 22 chr4 93104527 93104706 -109223641 + C-rich Low_complexity Low_complexity 2 176 0 225 294 0 0 chr4 93104727 93105057 -109223290 + CT-rich Low_complexity Low_complexity 1 330 0 207 160 13 80 chr4 93105112 93105262 -109223085 + (CCCA)n Simple_repeat Simple_repeat 1 140 0 346 219 0 86 chr4 93105278 93105429 -109222918 + C-rich Low_complexity Low_complexity 6 143 0 249 283 70 29 chr4 93105548 93105710 -109222637 - MIR SINE MIR -60 202 34 1492 253 117 7 chr4 93105889 93106435 -109221912 - L1ME1 LINE L1 -6 6160 5555 683 217 7 0 chr4 93106543 93106695 -109221652 - MLT1-int LTR MaLR -1218 153 1 2255 149 7 47 chr4 93106700 93107124 -109221223 - MLT2D LTR ERVL -7 407 1 200 207 317 0 chr4 93107316 93107398 -109220949 - MIR SINE MIR -119 143 36 1922 144 31 0 chr4 93107849 93108140 -109220207 - AluJo SINE Alu -12 300 1 773 224 31 15 chr4 93108264 93108460 -109219887 - MIR SINE MIR 0 262 64 321 250 44 70 chr4 93108550 93108878 -109219469 - L1ME2 LINE L1 -283 5881 5559 2913 149 54 17 chr4 93108908 93109445 -109218902 + MER89 LTR ERV1 1 557 -2 334 282 55 25 chr4 93109471 93109634 -109218713 - L1ME2 LINE L1 -568 5553 5386 2290 114 0 19 chr4 93110916 93111232 -109217115 - AluSx SINE Alu -2 310 1 1119 157 130 8 chr4 93111386 93111648 -109216699 - L1MB8 LINE L1 -1 6177 5884 229 308 15 30 chr4 93113935 93114068 -109214279 + CT-rich Low_complexity Low_complexity 2 132 0 186 43 0 0 chr4 93115326 93115349 -109212998 + (A)n Simple_repeat Simple_repeat 1 23 0 441 234 28 28 chr4 93115544 93115651 -109212696 + MIR3 SINE MIR 97 203 -5 442 198 143 0 chr4 93116065 93116191 -109212156 + MER58C DNA MER1_type 56 199 -16 1031 192 57 0 chr4 93116495 93116688 -109211659 + MIR SINE MIR 43 246 -16 259 283 0 0 chr4 93117074 93117134 -109211213 + MER20B DNA MER1_type 98 157 -626 2028 171 40 3 chr4 93117165 93117517 -109210830 + MLT1A1 LTR MaLR 1 365 0 12359 154 44 61 chr4 93117643 93119172 -109209175 - L1MA4 LINE L1 -5 7714 6161 2466 77 3 0 chr4 93119172 93119472 -109208875 - AluY SINE Alu -10 301 1 12359 154 44 61 chr4 93119472 93120187 -109208160 - L1MA4 LINE L1 -1558 6161 5435 1141 177 0 16 chr4 93120187 93120373 -109207974 - AluJb SINE Alu -30 282 100 12359 154 44 61 chr4 93120373 93121601 -109206746 - L1MA4 LINE L1 -2284 5435 4143 2467 74 7 0 chr4 93121601 93121910 -109206437 + AluY SINE Alu 1 311 0 12359 154 44 61 chr4 93121910 93122996 -109205351 - L1MA4 LINE L1 -3576 4143 3040 884 174 0 0 chr4 93123010 93123142 -109205205 - AluSq/x SINE Alu -180 132 1 1665 231 33 25 chr4 93123142 93123944 -109204403 - L1MA4 LINE L1 -4519 2977 2269 623 321 55 40 chr4 93124415 93124817 -109203530 - L1MA4 LINE L1 -5873 1623 1216 743 226 77 8 chr4 93124825 93125060 -109203287 - L1MD3 LINE L1 -17 7978 7728 847 143 25 17 chr4 93125461 93125826 -109202521 + CT-rich Low_complexity Low_complexity 1 368 0 196 307 264 0 chr4 93128304 93128444 -109199903 - MIR SINE MIR -7 255 79 312 247 24 0 chr4 93128595 93128680 -109199667 + MER5A DNA MER1_type 10 96 -93 185 304 0 22 chr4 93129694 93129740 -109198607 + MIR SINE MIR 30 74 -188 21 0 0 0 chr4 93131720 93131741 -109196606 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr4 93131813 93131842 -109196505 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 93133613 93133635 -109194712 + AT_rich Low_complexity Low_complexity 1 22 0 200 222 0 0 chr4 93134338 93134374 -109193973 + (TG)n Simple_repeat Simple_repeat 1 36 0 330 312 71 0 chr4 93135295 93135436 -109192911 - MIR SINE MIR -18 244 94 2223 106 7 3 chr4 93136468 93136771 -109191576 - AluSx SINE Alu -8 304 1 841 200 20 0 chr4 93136890 93137040 -109191307 - FRAM SINE Alu -21 155 3 21 36 0 0 chr4 93137917 93137945 -109190402 + AT_rich Low_complexity Low_complexity 1 28 0 271 250 171 0 chr4 93139726 93139814 -109188533 + L2 LINE L2 3160 3262 -10 209 171 49 0 chr4 93139989 93140030 -109188317 + MIR SINE MIR 204 246 -16 * 217 136 91 23 chr4 93140002 93140046 -109188301 + L2 LINE L2 3264 3310 -3 269 308 92 23 chr4 93140138 93140268 -109188079 + L3 LINE CR1 247 385 -1192 801 349 82 24 chr4 93140347 93140677 -109187670 + L3 LINE CR1 558 867 -710 950 181 27 41 chr4 93140677 93140898 -109187449 + MER20 DNA MER1_type 1 218 -1 801 349 82 24 chr4 93140898 93141306 -109187041 + L3 LINE CR1 867 1339 -238 21 71 0 0 chr4 93141379 93141421 -109186926 + AT_rich Low_complexity Low_complexity 1 42 0 289 271 14 0 chr4 93141543 93141613 -109186734 + L3 LINE CR1 1480 1550 -27 258 256 8 53 chr4 93143216 93143349 -109184998 + A-rich Low_complexity Low_complexity 2 128 0 2125 105 3 41 chr4 93145570 93145885 -109182462 + AluSx SINE Alu 1 303 -9 383 248 116 8 chr4 93146407 93146528 -109181819 + L2 LINE L2 3180 3313 0 2135 211 103 40 chr4 93147043 93147719 -109180628 + L1ME3A LINE L1 5429 6150 -20 1370 116 98 0 chr4 93147719 93147934 -109180413 + MER46A DNA MER2_type 1 236 0 2135 211 103 40 chr4 93147934 93147947 -109180400 + L1ME3A LINE L1 6150 6161 -9 229 402 0 18 chr4 93148867 93148979 -109179368 + MIR3 SINE MIR 67 176 -32 380 257 165 0 chr4 93149549 93149658 -109178689 - MIR SINE MIR -62 146 20 299 273 134 29 chr4 93151266 93151411 -109176936 - MIR SINE MIR -66 142 37 357 272 16 72 chr4 93151991 93152116 -109176231 - L2 LINE L2 -7 3265 3148 207 182 0 45 chr4 93152583 93152627 -109175720 - MIR3 SINE MIR -43 165 124 2420 42 0 11 chr4 93153965 93154270 -109174077 - AluY SINE Alu 0 302 1 274 197 40 0 chr4 93154767 93154843 -109173504 - L1MB4 LINE L1 0 6180 6102 264 186 0 0 chr4 93154965 93155008 -109173339 - MER5B DNA MER1_type 0 178 136 1006 312 37 44 chr4 93155227 93155663 -109172684 + HERV16 LTR ERVL 1688 2120 -2876 709 314 131 8 chr4 93155793 93156049 -109172298 - L1M4 LINE L1 -1542 4604 4381 192 77 0 0 chr4 93156049 93156075 -109172272 + (TATG)n Simple_repeat Simple_repeat 4 29 0 709 314 131 8 chr4 93156075 93156322 -109172025 - L1M4 LINE L1 -1765 4381 4039 257 232 0 0 chr4 93156421 93156477 -109171870 - MLT2B1 LTR ERVL 0 520 465 230 254 34 25 chr4 93156527 93156645 -109171702 + (TATATG)n Simple_repeat Simple_repeat 6 124 0 277 189 31 173 chr4 93156646 93156773 -109171574 - MLT2B2 LTR ERVL -51 464 356 25 31 0 0 chr4 93157170 93157202 -109171145 + AT_rich Low_complexity Low_complexity 1 32 0 2133 116 7 0 chr4 93157312 93157613 -109170734 - AluSq SINE Alu -10 303 1 502 261 112 0 chr4 93157740 93157874 -109170473 - MIR SINE MIR -74 188 40 437 137 27 0 chr4 93159171 93159244 -109169103 - AluJ/FRAM SINE Alu -18 294 220 309 277 43 0 chr4 93160209 93160303 -109168044 + MIR3 SINE MIR 102 199 -9 2633 33 0 0 chr4 93162278 93162585 -109165762 + AluY SINE Alu 1 307 -4 393 301 42 7 chr4 93163019 93163162 -109165185 + MIR SINE MIR 37 184 -78 749 325 107 30 chr4 93165657 93166051 -109162296 - L3 LINE CR1 -866 711 288 647 201 77 115 chr4 93166151 93166385 -109161962 - MIR SINE MIR -1 261 37 305 286 80 9 chr4 93166465 93166577 -109161770 + MIR3 SINE MIR 82 201 -7 696 165 0 47 chr4 93166678 93166805 -109161542 - FLAM_A SINE Alu -12 121 1 2245 102 0 0 chr4 93173417 93173710 -109154637 + AluSx SINE Alu 18 310 -2 357 304 22 72 chr4 93174494 93174675 -109153672 + MER5B DNA MER1_type 7 178 0 198 311 72 48 chr4 93174956 93175123 -109153224 - L2 LINE L2 -353 2961 2791 767 345 111 16 chr4 93175208 93175631 -109152716 - L2 LINE L2 0 3313 2851 198 316 195 35 chr4 93176436 93176610 -109151737 + MIR SINE MIR 3 204 -58 342 45 0 0 chr4 93176671 93176715 -109151632 + (TTCA)n Simple_repeat Simple_repeat 3 46 0 21 0 0 0 chr4 93178363 93178384 -109149963 + AT_rich Low_complexity Low_complexity 1 21 0 334 245 128 10 chr4 93180035 93180137 -109148210 + L2 LINE L2 3155 3268 -4 205 288 0 0 chr4 93181861 93181920 -109146427 + (TA)n Simple_repeat Simple_repeat 2 60 0 221 207 0 17 chr4 93181952 93182010 -109146337 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 690 229 139 74 chr4 93182756 93182957 -109145390 + MIR SINE MIR 1 222 -40 2464 71 3 0 chr4 93182957 93183254 -109145093 + AluSc SINE Alu 5 302 -7 690 229 139 74 chr4 93183254 93183296 -109145051 + MIR SINE MIR 222 260 -2 441 217 29 109 chr4 93186008 93186183 -109142164 + MLT1J2 LTR MaLR 15 175 -275 1690 142 16 23 chr4 93186197 93186507 -109141840 - MER47A DNA MER2_type 0 366 59 1441 274 143 40 chr4 93186716 93187424 -109140923 + L2 LINE L2 1532 2312 -1002 1143 273 110 13 chr4 93187470 93188041 -109140306 + L2 LINE L2 2657 3279 -34 318 353 166 30 chr4 93188255 93188852 -109139495 - L2 LINE L2 -648 2666 1989 210 91 0 0 chr4 93188972 93189005 -109139342 + (TTGGGG)n Simple_repeat Simple_repeat 3 35 0 1557 181 7 17 chr4 93189055 93189347 -109139000 + AluJb SINE Alu 3 291 -21 245 358 138 0 chr4 93189526 93189635 -109138712 - MIR SINE MIR -119 143 20 26 30 0 0 chr4 93189715 93189748 -109138599 + AT_rich Low_complexity Low_complexity 1 33 0 556 156 141 15 chr4 93189958 93190093 -109138254 + MIR SINE MIR 56 207 -55 293 327 18 18 chr4 93190093 93190313 -109138034 - L1ME4a LINE L1 -243 5878 5659 2039 114 7 0 chr4 93190322 93190630 -109137717 + AluSq SINE Alu 1 310 0 2626 257 85 82 chr4 93191374 93192849 -109135498 + L2 LINE L2 1796 3278 -35 260 215 185 0 chr4 93193091 93193156 -109135191 - MIR3 SINE MIR -6 202 126 22 0 0 0 chr4 93193621 93193643 -109134704 + AT_rich Low_complexity Low_complexity 1 22 0 33 0 0 0 chr4 93195312 93195345 -109133002 + AT_rich Low_complexity Low_complexity 1 33 0 1667 55 9 0 chr4 93195412 93195630 -109132717 + L1PA3 LINE L1 5933 6152 -3 28 0 0 0 chr4 93195630 93195658 -109132689 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 93196313 93196343 -109132004 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 93196526 93196554 -109131793 + AT_rich Low_complexity Low_complexity 1 28 0 1405 138 37 19 chr4 93196612 93196880 -109131467 - L1MA2 LINE L1 0 6304 6032 2081 107 48 0 chr4 93196922 93197213 -109131134 - AluSg SINE Alu -5 305 1 1807 168 43 21 chr4 93197259 93197634 -109130713 + MLT1B LTR MaLR 4 386 -4 269 169 0 34 chr4 93198395 93198454 -109129893 - L1MC5 LINE L1 -54 7907 7851 23 0 0 0 chr4 93202535 93202558 -109125789 + AT_rich Low_complexity Low_complexity 1 23 0 812 287 212 11 chr4 93203189 93203562 -109124785 - L2 LINE L2 -6 3307 2860 233 341 106 8 chr4 93203724 93203847 -109124500 + L2 LINE L2 3137 3271 -1 897 259 41 21 chr4 93205735 93205978 -109122369 - MIR SINE MIR -8 254 7 411 231 179 58 chr4 93206591 93206747 -109121600 - MER5A DNA MER1_type -1 188 14 272 325 51 57 chr4 93207179 93207336 -109121011 + MIR3 SINE MIR 32 187 -21 290 227 289 0 chr4 93209195 93209292 -109119055 - MIR SINE MIR -116 146 22 326 292 93 76 chr4 93209392 93209683 -109118664 - L1M4 LINE L1 -2703 3443 3148 241 200 20 0 chr4 93210567 93210617 -109117730 - MADE1 DNA Mariner -29 51 1 1551 192 31 17 chr4 93210904 93211195 -109117152 - AluJo SINE Alu -17 295 1 25 0 0 0 chr4 93212719 93212744 -109115603 + AT_rich Low_complexity Low_complexity 1 25 0 4019 136 22 30 chr4 93212939 93213111 -109115236 + L1MB3 LINE L1 5461 5633 -550 2132 107 3 10 chr4 93213111 93213411 -109114936 - AluSc SINE Alu -9 300 3 4019 136 22 30 chr4 93213411 93213966 -109114381 + L1MB3 LINE L1 5633 6182 -1 2423 99 0 0 chr4 93214034 93214346 -109114001 + AluSx SINE Alu 1 312 0 2223 76 4 0 chr4 93217606 93217882 -109110465 + AluSg1 SINE Alu 1 277 -32 199 0 0 61 chr4 93217884 93217917 -109110430 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1869 163 3 7 chr4 93219304 93219599 -109108748 - AluJo SINE Alu -18 294 1 21 0 0 0 chr4 93219599 93219620 -109108727 + AT_rich Low_complexity Low_complexity 1 21 0 304 209 154 0 chr4 93219863 93219954 -109108393 - Charlie7 DNA MER1_type -2505 107 3 1037 214 144 25 chr4 93223915 93224200 -109104147 + MLT1C LTR MaLR 1 319 -148 339 263 211 6 chr4 93224463 93224619 -109103728 + MER112 DNA MER1_type 73 260 0 2005 199 13 15 chr4 93225456 93225853 -109102494 + MSTD LTR MaLR 1 396 0 519 331 108 42 chr4 93226118 93226450 -109101897 + L2 LINE L2 2914 3267 -5 618 294 40 32 chr4 93227655 93227903 -109100444 - MIR SINE MIR -4 258 9 188 35 35 0 chr4 93228013 93228042 -109100305 + (GA)n Simple_repeat Simple_repeat 1 30 0 1638 173 18 11 chr4 93228494 93228772 -109099575 - AluJo SINE Alu -32 280 1 237 167 0 0 chr4 93230085 93230121 -109098226 - L2 LINE L2 -8 3264 3229 316 338 21 13 chr4 93230404 93230540 -109097807 + MIR3 SINE MIR 74 208 0 1396 148 0 0 chr4 93230556 93230785 -109097562 + L1MB8 LINE L1 5692 5920 -264 508 93 163 0 chr4 93230814 93230900 -109097447 + L1MB8 LINE L1 6079 6178 0 2258 115 0 0 chr4 93230910 93231206 -109097141 + AluSx SINE Alu 1 296 -16 1798 132 3 65 chr4 93231617 93231927 -109096420 - AluSx SINE Alu -16 296 6 183 328 45 0 chr4 93233964 93234031 -109094316 + L2 LINE L2 3117 3186 -86 381 243 92 70 chr4 93234291 93234476 -109093871 + MER5A DNA MER1_type 1 189 0 21 36 0 0 chr4 93235702 93235730 -109092617 + AT_rich Low_complexity Low_complexity 1 28 0 343 134 10 52 chr4 93236949 93237046 -109091301 + CT-rich Low_complexity Low_complexity 2 94 0 195 42 0 0 chr4 93237280 93237304 -109091043 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr4 93237623 93237647 -109090700 + AT_rich Low_complexity Low_complexity 1 24 0 2209 91 0 0 chr4 93238338 93238623 -109089724 - AluSx SINE Alu -13 299 15 278 322 75 12 chr4 93238668 93238799 -109089548 - MIR SINE MIR -66 142 16 2190 97 3 24 chr4 93238846 93239144 -109089203 - AluSx SINE Alu -19 293 2 25 0 0 0 chr4 93239453 93239478 -109088869 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 93239939 93239961 -109088386 + AT_rich Low_complexity Low_complexity 1 22 0 268 324 122 56 chr4 93240071 93240923 -109087424 + L2 LINE L2 1167 2074 -1240 424 298 10 8 chr4 93240976 93241157 -109087190 + MIR SINE MIR 28 261 -1 21 36 0 0 chr4 93241638 93241666 -109086681 + AT_rich Low_complexity Low_complexity 1 28 0 217 196 22 0 chr4 93241911 93241957 -109086390 + (TA)n Simple_repeat Simple_repeat 1 47 0 396 40 0 0 chr4 93241957 93242007 -109086340 + (TG)n Simple_repeat Simple_repeat 1 50 0 253 344 17 0 chr4 93242012 93242192 -109086155 + L1M4c LINE L1 1265 1447 -4937 305 325 32 38 chr4 93242196 93242353 -109085994 + HAL1b LINE L1 340 495 -853 300 320 33 25 chr4 93242961 93243083 -109085264 + L2 LINE L2 2898 3020 -252 1799 171 13 16 chr4 93243097 93243401 -109084946 - AluJo SINE Alu -9 303 1 995 190 19 14 chr4 93244117 93244328 -109084019 + AluSq SINE Alu 94 305 -8 6095 153 9 22 chr4 93244561 93244929 -109083418 - L1PB1 LINE L1 -1 6150 5779 2332 113 0 0 chr4 93244929 93245231 -109083116 - AluSq SINE Alu -11 302 1 6095 153 9 22 chr4 93245231 93245243 -109083104 - L1PB1 LINE L1 -372 5779 5768 2355 101 3 3 chr4 93245243 93245549 -109082798 - AluSx SINE Alu -6 306 1 6095 153 9 22 chr4 93245549 93247484 -109080863 - L1PB1 LINE L1 -383 5768 3861 222 221 33 44 chr4 93247542 93247723 -109080624 + (CACAA)n Simple_repeat Simple_repeat 1 179 0 5819 93 35 3 chr4 93247851 93248836 -109079511 + L1PA10 LINE L1 5143 6159 -9 22 70 0 0 chr4 93249001 93249044 -109079303 + AT_rich Low_complexity Low_complexity 1 43 0 2294 110 0 0 chr4 93249060 93249352 -109078995 + AluSx SINE Alu 1 292 -20 34 0 0 22 chr4 93249355 93249384 -109078963 + AT_rich Low_complexity Low_complexity 1 30 -14 1187 173 92 78 chr4 93249384 93249667 -109078680 - AluJb SINE Alu -14 288 2 34 0 0 22 chr4 93249667 93249682 -109078665 + AT_rich Low_complexity Low_complexity 30 44 0 272 156 94 0 chr4 93249959 93250023 -109078324 + L1MA9 LINE L1 6205 6274 -38 3627 126 10 0 chr4 93250860 93251382 -109076965 - MER1A DNA MER1_type 0 527 1 560 97 11 0 chr4 93251623 93251716 -109076631 + L1MB3 LINE L1 6088 6181 -2 1162 201 82 26 chr4 93251827 93252131 -109076216 + Charlie1b DNA MER1_type 1 321 -202 2236 99 3 3 chr4 93252135 93252429 -109075918 + AluSx SINE Alu 3 296 -16 1357 123 5 5 chr4 93252449 93252644 -109075703 - AluSp SINE Alu -12 301 107 22 35 0 0 chr4 93253321 93253350 -109074997 + AT_rich Low_complexity Low_complexity 1 29 0 1101 200 16 0 chr4 93253376 93253561 -109074786 + AluJo SINE Alu 85 272 -40 220 229 203 17 chr4 93253925 93254043 -109074304 - MIR SINE MIR -118 144 5 24 0 0 0 chr4 93255739 93255763 -109072584 + AT_rich Low_complexity Low_complexity 1 24 0 3840 178 14 0 chr4 93255791 93256548 -109071799 + L1P LINE L1 4402 5169 -977 1865 84 0 8 chr4 93256702 93256953 -109071394 + AluSp SINE Alu 65 313 0 265 221 63 16 chr4 93256968 93257094 -109071253 + Charlie1b DNA MER1_type 355 486 -37 1708 142 68 6 chr4 93257094 93257405 -109070942 - MER2 DNA MER2_type -1 344 15 2370 47 40 7 chr4 93257658 93257958 -109070389 + AluY SINE Alu 1 310 -1 337 286 36 27 chr4 93258578 93258690 -109069657 - L2 LINE L2 -43 3270 3158 223 341 8 24 chr4 93258682 93258805 -109069542 - L2 LINE L2 -925 2389 2269 * 829 113 73 0 chr4 93258807 93258931 -109069416 + AluJ SINE Alu 1 133 -169 350 190 165 0 chr4 93258932 93259011 -109069336 + MER45 DNA AcHobo 29 120 -58 1848 303 105 22 chr4 93259076 93259888 -109068459 - L2 LINE L2 -1021 2293 1415 3148 161 57 37 chr4 93260049 93260419 -109067928 + L1MB7 LINE L1 4855 5216 -968 2423 90 0 0 chr4 93260419 93260718 -109067629 + AluSg SINE Alu 4 302 -8 3148 161 57 37 chr4 93260718 93261424 -109066923 + L1MB7 LINE L1 5216 5955 -229 206 224 103 60 chr4 93264507 93264623 -109063724 - L2 LINE L2 -929 2385 2265 284 255 53 0 chr4 93265913 93266007 -109062340 - L1MB7 LINE L1 -10 6174 6076 25 0 0 0 chr4 93266091 93266116 -109062231 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr4 93266250 93266273 -109062074 + AT_rich Low_complexity Low_complexity 1 23 0 805 219 0 45 chr4 93266483 93266661 -109061686 + AluJ SINE Alu 137 306 -6 2219 64 0 60 chr4 93266899 93267213 -109061134 + AluY SINE Alu 1 295 -16 187 337 76 87 chr4 93267853 93268233 -109060114 + L2 LINE L2 2602 2977 -337 196 279 0 0 chr4 93268358 93268401 -109059946 + L2 LINE L2 3221 3263 -9 585 334 106 28 chr4 93268614 93269048 -109059299 + L2 LINE L2 2845 3312 -1 197 317 0 0 chr4 93269071 93269131 -109059216 + L2 LINE L2 2792 2851 -463 27 87 0 0 chr4 93269360 93269429 -109058918 + AT_rich Low_complexity Low_complexity 1 69 0 2221 112 0 7 chr4 93269519 93269814 -109058533 + AluSx SINE Alu 1 293 -19 186 339 0 0 chr4 93271248 93271304 -109057043 + L2 LINE L2 2912 2967 -305 2089 120 0 10 chr4 93271407 93271706 -109056641 - AluSx SINE Alu -14 298 3 23 0 0 0 chr4 93272397 93272420 -109055927 + AT_rich Low_complexity Low_complexity 1 23 0 892 103 76 22 chr4 93272462 93272646 -109055701 - L1MA8 LINE L1 -3 6288 6095 1756 145 86 44 chr4 93272896 93273431 -109054916 + MLT2A2 LTR ERVL 1 554 0 815 243 85 4 chr4 93274142 93274377 -109053970 - MIR SINE MIR -4 258 5 264 292 45 17 chr4 93274540 93274718 -109053629 + L1ME LINE L1 5636 5818 -303 21 0 0 0 chr4 93275280 93275301 -109053046 + AT_rich Low_complexity Low_complexity 1 21 0 1703 177 0 14 chr4 93275444 93275732 -109052615 + AluJo SINE Alu 1 284 -28 2243 112 0 3 chr4 93276819 93277123 -109051224 + AluSx SINE Alu 1 303 -9 361 328 8 15 chr4 93277234 93277365 -109050982 + L2 LINE L2 3182 3311 -2 2505 146 47 6 chr4 93277911 93278383 -109049964 + L1MB7 LINE L1 5685 6175 -9 1858 251 82 77 chr4 93278383 93279268 -109049079 - L2 LINE L2 -1316 1998 1109 186 314 57 0 chr4 93279356 93279426 -109048921 + L2 LINE L2 3224 3297 -16 413 304 82 15 chr4 93280470 93280605 -109047742 + MIR SINE MIR 48 191 -71 2099 102 0 0 chr4 93280608 93280873 -109047474 + AluSx SINE Alu 37 301 -11 27 29 0 0 chr4 93280950 93280984 -109047363 + AT_rich Low_complexity Low_complexity 1 34 0 199 375 0 0 chr4 93281067 93281123 -109047224 - L2 LINE L2 -8 3264 3209 710 283 35 19 chr4 93281220 93281478 -109046869 - MIR SINE MIR 0 262 1 354 292 96 22 chr4 93281496 93281674 -109046673 - L2 LINE L2 -3 3310 3120 2712 252 83 5 chr4 93282482 93283267 -109045080 + MER21B LTR ERV1 15 860 -3 2278 88 3 3 chr4 93283883 93284179 -109044168 - AluSc SINE Alu -13 296 1 1046 197 15 5 chr4 93285085 93285288 -109043059 - MER58A DNA MER1_type -1 223 19 1856 105 60 76 chr4 93285351 93285532 -109042815 - AluSx SINE Alu -1 311 136 1985 118 3 7 chr4 93285532 93285819 -109042528 - AluSg SINE Alu -24 286 1 1856 105 60 76 chr4 93285819 93285952 -109042395 - AluSx SINE Alu -176 136 2 324 279 70 74 chr4 93286379 93286474 -109041873 + L1MB8 LINE L1 5721 5815 -363 2795 205 29 23 chr4 93286474 93287123 -109041224 + MER82 DNA MER2_type 1 653 0 324 279 70 74 chr4 93287123 93287271 -109041076 + L1MB8 LINE L1 5815 5963 -215 189 309 82 31 chr4 93287895 93287992 -109040355 + L2 LINE L2 2563 2664 -650 313 264 36 45 chr4 93288357 93288467 -109039880 + L2 LINE L2 2208 2316 -998 211 255 245 32 chr4 93288454 93288548 -109039799 - MIR SINE MIR -115 147 34 * 445 324 27 23 chr4 93288538 93288801 -109039546 + L2 LINE L2 2413 2764 -550 248 350 150 36 chr4 93288859 93289245 -109039102 + L2 LINE L2 2854 3283 -30 21 0 0 0 chr4 93289418 93289439 -109038908 + AT_rich Low_complexity Low_complexity 1 21 0 37650 72 8 7 chr4 93289640 93295779 -109032568 + L1PA6 LINE L1 12 6154 0 2464 65 0 0 chr4 93296071 93296363 -109031984 - AluY SINE Alu -17 294 3 24 0 0 0 chr4 93296395 93296419 -109031928 + AT_rich Low_complexity Low_complexity 1 24 0 310 336 68 57 chr4 93296624 93296904 -109031443 + L1ME LINE L1 5483 5765 -356 2599 39 7 7 chr4 93297481 93297791 -109030556 + AluY SINE Alu 1 310 -1 254 267 22 56 chr4 93298724 93298814 -109029533 - MIR SINE MIR -24 238 152 193 356 27 0 chr4 93298892 93298965 -109029382 + MIR SINE MIR 66 140 -122 785 290 22 54 chr4 93298996 93299403 -109028944 + MLT1I LTR MaLR 12 405 -4 25 0 0 0 chr4 93299498 93299523 -109028824 + AT_rich Low_complexity Low_complexity 1 25 0 14319 137 91 21 chr4 93299567 93303145 -109025202 + L1PBa LINE L1 35 3863 -2999 887 233 34 81 chr4 93303267 93303709 -109024638 - MLT1D LTR MaLR -82 423 3 1869 260 34 14 chr4 93303736 93304233 -109024114 + MLT1E LTR MaLR 67 573 -20 942 238 50 46 chr4 93304242 93304786 -109023561 + MLT1E-int LTR MaLR 1 662 -709 417 322 89 0 chr4 93304913 93305093 -109023254 + MLT1E-int LTR MaLR 692 887 -484 2319 160 61 28 chr4 93305213 93305707 -109022640 + LTR54 LTR ERV1 1 510 0 993 236 32 71 chr4 93305719 93306074 -109022273 + MER65-int LTR ERV1 1324 2252 -4079 278 229 0 0 chr4 93306218 93306279 -109022068 + MER65-int LTR ERV1 558 618 -6919 2209 115 0 28 chr4 93306413 93306734 -109021613 + AluSx SINE Alu 1 312 0 5082 200 142 47 chr4 93306942 93308213 -109020134 + MER65-int LTR ERV1 2404 3552 -1384 1301 216 49 31 chr4 93308213 93308500 -109019847 + AluJo SINE Alu 2 293 -19 5082 200 142 47 chr4 93308500 93308750 -109019597 + MER65-int LTR ERV1 3552 3777 -1159 2312 91 7 3 chr4 93308750 93309048 -109019299 + AluSq SINE Alu 1 299 -14 5082 200 142 47 chr4 93309048 93309372 -109018975 + MER65-int LTR ERV1 3777 4405 -531 1151 241 17 17 chr4 93309380 93309674 -109018673 + MER65-int LTR ERV1 3800 4093 -778 286 217 0 0 chr4 93309726 93309786 -109018561 + MER65-int LTR ERV1 4115 4174 -697 485 158 34 23 chr4 93309888 93310065 -109018282 + (TA)n Simple_repeat Simple_repeat 2 180 0 369 0 0 0 chr4 93310094 93310135 -109018212 + (TG)n Simple_repeat Simple_repeat 2 42 0 * 393 22 0 0 chr4 93310134 93310180 -109018167 + (TA)n Simple_repeat Simple_repeat 1 46 0 1157 252 29 19 chr4 93310201 93310566 -109017781 + LTR10C LTR ERV1 188 479 -26 252 204 0 0 chr4 93310632 93310681 -109017666 + MER65-int LTR ERV1 4182 4230 -641 * 1390 248 59 55 chr4 93310660 93311189 -109017158 + MER65-int LTR ERV1 6614 7144 -393 1688 176 97 67 chr4 93311189 93311283 -109017064 + LTR54 LTR ERV1 1 91 -419 1817 161 13 7 chr4 93311283 93311581 -109016766 + AluSx SINE Alu 3 302 -10 1688 176 97 67 chr4 93311581 93311979 -109016368 + LTR54 LTR ERV1 91 508 -2 542 215 35 7 chr4 93312059 93312203 -109016144 + MER106B DNA MER1_type 906 1053 -6 288 410 39 0 chr4 93312349 93312505 -109015842 + MIR SINE MIR 28 189 -73 480 193 35 0 chr4 93312533 93312647 -109015700 + L1ME1 LINE L1 5939 6056 -110 2343 93 0 0 chr4 93312647 93312937 -109015410 - AluSx SINE Alu -17 295 6 645 324 73 34 chr4 93313251 93313609 -109014738 - L3 LINE CR1 -836 741 370 926 165 44 13 chr4 93314362 93314520 -109013827 - FRAM SINE Alu -16 160 1 274 328 96 17 chr4 93315204 93315381 -109012966 + MIR3 SINE MIR 11 201 -7 196 263 86 101 chr4 93315872 93316070 -109012277 + L2 LINE L2 3078 3272 -41 2173 110 0 0 chr4 93316817 93317120 -109011227 + AluSx SINE Alu 1 303 0 689 163 20 7 chr4 93317172 93317319 -109011028 - L1MB8 LINE L1 -3 6175 6027 2363 86 3 0 chr4 93317325 93317629 -109010718 + AluSx SINE Alu 1 305 -7 2096 151 84 0 chr4 93317639 93318044 -109010303 - L1MB2 LINE L1 -18 6153 5715 211 195 0 0 chr4 93318522 93318563 -109009784 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 2160 120 0 7 chr4 93318753 93319061 -109009286 + AluSx SINE Alu 1 306 -6 30 59 0 0 chr4 93319350 93319401 -109008946 + AT_rich Low_complexity Low_complexity 1 51 0 1066 46 0 0 chr4 93319498 93319629 -109008718 + THE1C LTR MaLR 245 375 0 2891 107 133 2 chr4 93319629 93320134 -109008213 + THE1C-int LTR MaLR 1 571 -1009 2688 146 22 6 chr4 93320138 93320630 -109007717 + Tigger3(Golem) DNA MER2_type 2495 2994 -35 183 200 111 0 chr4 93320669 93320714 -109007633 - MIR SINE MIR -128 134 85 1094 187 67 5 chr4 93320714 93321004 -109007343 - MLT1D LTR MaLR 0 505 153 1885 168 90 25 chr4 93321007 93321197 -109007150 + MSTB LTR MaLR 1 177 -249 2019 138 0 10 chr4 93321197 93321493 -109006854 + AluSx SINE Alu 1 293 -19 1885 168 90 25 chr4 93321493 93321702 -109006645 + MSTB LTR MaLR 177 426 0 5592 143 14 90 chr4 93321702 93322938 -109005409 + MSTB-int LTR MaLR 1 1142 -509 590 103 21 21 chr4 93323041 93323138 -109005209 - AluS SINE Alu -214 99 3 2364 67 0 35 chr4 93323951 93324265 -109004082 + AluY SINE Alu 1 303 -8 299 311 148 49 chr4 93324834 93325239 -109003108 + MLT1J2 LTR MaLR 1 445 -5 202 253 126 32 chr4 93325425 93325520 -109002827 + L2 LINE L2 3119 3222 -50 671 262 94 72 chr4 93325946 93326448 -109001899 + L1MB7 LINE L1 3115 3647 -2499 1790 182 13 3 chr4 93326448 93326756 -109001591 + AluJb SINE Alu 1 311 -1 671 262 94 72 chr4 93326756 93327154 -109001193 + L1MB7 LINE L1 3647 4035 -2111 1642 172 14 7 chr4 93327204 93327483 -109000864 + AluJo SINE Alu 1 281 -31 2592 53 0 0 chr4 93327483 93327785 -109000562 - AluY SINE Alu -8 303 1 190 241 0 56 chr4 93327868 93327922 -109000425 - L2 LINE L2 0 3313 3263 359 278 21 21 chr4 93327945 93328089 -109000258 + L1MB7 LINE L1 4024 4167 -1979 307 262 110 30 chr4 93328190 93328354 -108999993 + L1MB7 LINE L1 5144 5320 -826 546 232 12 15 chr4 93328455 93328615 -108999732 - MLT1I LTR MaLR 0 419 278 2345 61 4 0 chr4 93328649 93328986 -108999361 + AluY SINE Alu 1 338 0 1232 45 6 56 chr4 93328986 93329165 -108999182 + AluY SINE Alu 136 305 -6 404 270 176 82 chr4 93329266 93329607 -108998740 + L1MB7 LINE L1 5374 5631 -535 2110 131 7 0 chr4 93329842 93330139 -108998208 - AluSx SINE Alu -13 299 1 226 209 0 0 chr4 93330474 93330517 -108997830 + (CTA)n Simple_repeat Simple_repeat 1 43 0 7767 20 0 0 chr4 93330684 93331751 -108996596 + L1PA3 LINE L1 5089 6155 0 4246 92 21 57 chr4 93334061 93334375 -108993972 + L1PB1 LINE L1 5465 5789 -388 249 83 0 0 chr4 93334375 93334411 -108993936 + (TG)n Simple_repeat Simple_repeat 2 37 0 4246 92 21 57 chr4 93334411 93334834 -108993513 + L1PB1 LINE L1 5789 6177 0 20810 155 24 18 chr4 93335011 93340110 -108988237 + L1PA11 LINE L1 1054 6173 -1 285 75 0 0 chr4 93340449 93340489 -108987858 + (TATG)n Simple_repeat Simple_repeat 1 40 0 921 136 0 32 chr4 93340515 93340670 -108987677 - AluSq SINE Alu -81 232 83 2300 98 18 9 chr4 93340718 93341055 -108987292 - L1PA14 LINE L1 0 6161 5822 2168 103 0 0 chr4 93341321 93341643 -108986704 + AluSx SINE Alu 1 283 -29 434 301 37 25 chr4 93342863 93343026 -108985321 - MIR SINE MIR -17 245 81 449 288 86 7 chr4 93343125 93343264 -108985083 - MIR3 SINE MIR -1 207 58 2806 151 8 30 chr4 93344408 93344803 -108983544 + L1MB7 LINE L1 5643 6024 -160 2382 91 0 0 chr4 93344803 93345101 -108983246 - AluSc SINE Alu -11 298 1 2806 151 8 30 chr4 93345101 93345240 -108983107 + L1MB7 LINE L1 6024 6165 -19 498 253 82 92 chr4 93345727 93345968 -108982379 + L2 LINE L2 2939 3176 -137 2467 74 0 0 chr4 93345968 93346264 -108982083 - AluSc SINE Alu -13 296 1 498 253 82 92 chr4 93346264 93346401 -108981946 + L2 LINE L2 3176 3313 0 1729 315 126 31 chr4 93346457 93347397 -108980950 + L2 LINE L2 1004 2032 -1282 1483 204 138 2 chr4 93347411 93347821 -108980526 + MLT2B3 LTR ERVL 3 482 -33 390 42 0 0 chr4 93347821 93347869 -108980478 + (CA)n Simple_repeat Simple_repeat 2 49 0 1483 204 138 2 chr4 93347869 93347899 -108980448 + MLT2B3 LTR ERVL 482 507 -8 1122 177 36 18 chr4 93348045 93348315 -108980032 + AluJo SINE Alu 87 360 0 900 172 2 5 chr4 93348346 93348758 -108979589 + GA-rich Low_complexity Low_complexity 1 410 0 326 290 30 10 chr4 93348771 93348871 -108979476 + L2 LINE L2 3171 3272 0 394 273 14 36 chr4 93348935 93349074 -108979273 + L2 LINE L2 2188 2323 -991 661 100 0 0 chr4 93349116 93349206 -108979141 + AluSg/x SINE Alu 216 305 -7 917 304 120 10 chr4 93349219 93349870 -108978477 + L2 LINE L2 2393 3135 -178 235 242 15 15 chr4 93350576 93350642 -108977705 - L2 LINE L2 -722 2592 2527 1360 203 82 25 chr4 93350858 93351222 -108977125 + MSTB1 LTR MaLR 1 385 -47 1104 172 110 0 chr4 93351233 93351442 -108976905 + MSTC LTR MaLR 197 428 0 277 315 120 0 chr4 93351514 93351622 -108976725 + L2 LINE L2 3016 3136 -177 1023 290 46 30 chr4 93351801 93352194 -108976153 + L2 LINE L2 2915 3313 0 1455 183 138 26 chr4 93352287 93352664 -108975683 - MSTB LTR MaLR -4 422 4 1003 244 21 12 chr4 93353442 93353684 -108974663 - MIR SINE MIR 0 262 19 277 233 0 0 chr4 93354155 93354215 -108974132 + MLT1J2 LTR MaLR 347 406 -44 42607 36 1 1 chr4 93354740 93360750 -108967597 + L1PA3 LINE L1 3 6006 -149 431 118 47 30 chr4 93360923 93361092 -108967255 + C-rich Low_complexity Low_complexity 2 173 0 1556 138 98 10 chr4 93361194 93361490 -108966857 + MSTB-int LTR MaLR 1330 1651 0 2486 156 9 25 chr4 93361490 93361921 -108966426 + MSTB LTR MaLR 1 424 -2 702 180 0 8 chr4 93361921 93362049 -108966298 - MLT1D LTR MaLR -351 154 28 2083 122 0 41 chr4 93363568 93363887 -108964460 - AluSg SINE Alu -4 306 1 220 237 34 0 chr4 93364214 93364273 -108964074 + GA-rich Low_complexity Low_complexity 2 62 0 4360 36 24 0 chr4 93364457 93364990 -108963357 + L1PA3 LINE L1 5607 6152 -3 25 0 0 0 chr4 93364990 93365015 -108963332 + AT_rich Low_complexity Low_complexity 1 25 0 539 297 82 30 chr4 93365253 93365556 -108962791 - LTR16C LTR ERVL -19 472 154 183 194 0 0 chr4 93365663 93365694 -108962653 - L2 LINE L2 -18 3254 3224 445 143 12 0 chr4 93366163 93366247 -108962100 - L1PB4 LINE L1 -3 6153 6069 406 137 27 0 chr4 93366286 93366359 -108961988 - L1PB4 LINE L1 -376 5780 5706 1348 227 34 22 chr4 93366362 93366776 -108961571 - L1 LINE L1 -1614 5234 4816 * 7343 214 34 13 chr4 93366753 93369025 -108959322 - L1 LINE L1 -2607 4241 1881 1839 186 0 3 chr4 93369025 93369320 -108959027 - AluJb SINE Alu -14 298 5 7343 214 34 13 chr4 93369320 93370151 -108958196 - L1 LINE L1 -4967 1881 1070 427 358 72 31 chr4 93370299 93370492 -108957855 - L1 LINE L1 -6062 787 587 1159 281 87 5 chr4 93370525 93370927 -108957420 - L1 LINE L1 -6404 445 11 465 272 124 18 chr4 93371497 93371666 -108956681 + MIR SINE MIR 47 233 -29 303 286 67 8 chr4 93371703 93371822 -108956525 + L2 LINE L2 3170 3295 -18 421 289 92 62 chr4 93372082 93372439 -108955908 + MARNA DNA Mariner 88 455 -131 364 377 48 13 chr4 93372628 93372938 -108955409 + L2 LINE L2 631 951 -2363 1385 298 72 18 chr4 93372983 93373684 -108954663 + L2 LINE L2 2553 3297 -16 2594 122 60 0 chr4 93375520 93375922 -108952425 - MSTB LTR MaLR 0 426 1 34 42 0 0 chr4 93376056 93376104 -108952243 + AT_rich Low_complexity Low_complexity 1 48 0 27 62 0 0 chr4 93377795 93377843 -108950504 + AT_rich Low_complexity Low_complexity 1 48 0 325 189 32 32 chr4 93377974 93378069 -108950278 + L1MC5 LINE L1 7833 7927 -34 340 308 128 19 chr4 93378089 93378351 -108949996 + L1ME4a LINE L1 5174 5457 -743 971 201 20 0 chr4 93378351 93378555 -108949792 - MLT1D LTR MaLR 0 505 298 2326 113 0 3 chr4 93378991 93379302 -108949045 - AluSg SINE Alu 0 310 1 220 237 34 0 chr4 93379629 93379688 -108948659 + GA-rich Low_complexity Low_complexity 2 62 0 246 44 0 44 chr4 93379741 93379786 -108948561 + L1MA7 LINE L1 6247 6289 -2 317 279 82 32 chr4 93380404 93380562 -108947785 + L1ME4a LINE L1 5716 5881 -240 2313 101 0 0 chr4 93380935 93381233 -108947114 - AluSx SINE Alu -14 298 1 206 350 33 33 chr4 93381841 93381961 -108946386 - L2 LINE L2 -4 3309 3190 2101 126 17 0 chr4 93382275 93382569 -108945778 - AluSx SINE Alu -13 299 1 3066 132 58 4 chr4 93383202 93383757 -108944590 - L1MB2 LINE L1 0 6171 5587 330 179 0 30 chr4 93383973 93384040 -108944307 - L2 LINE L2 0 3272 3208 773 260 66 4 chr4 93384591 93384833 -108943514 + MIR SINE MIR 5 261 -1 204 287 81 59 chr4 93384809 93384945 -108943402 + L2 LINE L2 3128 3266 -47 * 516 96 0 0 chr4 93386768 93386851 -108941496 + L1PB1 LINE L1 6068 6150 -1 263 277 93 0 chr4 93386885 93386992 -108941355 - MIR SINE MIR -80 128 38 269 343 0 0 chr4 93387218 93387288 -108941059 + L2 LINE L2 2894 2963 -309 743 236 73 58 chr4 93387302 93387559 -108940788 - MIR SINE MIR -10 252 4 278 218 0 0 chr4 93387689 93387744 -108940603 + L2 LINE L2 3257 3311 -2 201 126 17 59 chr4 93388087 93388206 -108940141 + (TA)n Simple_repeat Simple_repeat 2 115 0 336 236 115 10 chr4 93388209 93388417 -108939930 + L1M4 LINE L1 2746 2975 -3171 380 248 105 8 chr4 93388424 93388557 -108939790 + L1M4 LINE L1 3070 3215 -2931 2050 72 16 42 chr4 93388569 93388876 -108939471 + AluY SINE Alu 1 299 -12 26 50 0 0 chr4 93389042 93389082 -108939265 + AT_rich Low_complexity Low_complexity 1 40 0 1469 191 17 24 chr4 93389159 93389447 -108938900 - AluJo SINE Alu -24 288 3 1555 104 158 12 chr4 93389604 93389939 -108938408 - L1MCa LINE L1 -4298 2128 1745 2185 113 7 3 chr4 93389939 93390240 -108938107 - AluSx SINE Alu -10 302 1 1866 139 14 27 chr4 93390250 93390544 -108937803 - AluSx SINE Alu -22 290 1 8047 150 60 3 chr4 93390544 93392099 -108936248 - L1MCa LINE L1 -4764 1662 20 1302 81 5 22 chr4 93392105 93392290 -108936057 - AluSg/x SINE Alu -8 301 120 210 320 0 39 chr4 93392614 93392692 -108935655 + L2 LINE L2 3239 3313 0 214 353 35 0 chr4 93392784 93392869 -108935478 - MIR SINE MIR -78 130 43 244 341 61 12 chr4 93393519 93393601 -108934746 + MIR SINE MIR 20 105 -103 489 248 9 0 chr4 93394036 93394139 -108934208 - MER44D DNA MER2_type 0 705 602 3586 134 48 5 chr4 93394139 93394707 -108933640 + MER7C DNA MER2_type 1 592 -10 1481 158 15 0 chr4 93394716 93394976 -108933371 - MER44D DNA MER2_type -102 503 185 254 338 68 0 chr4 93395614 93395747 -108932600 + HAL1 LINE L1 2 143 -2364 572 293 203 44 chr4 93395777 93396520 -108931827 + HAL1 LINE L1 300 1160 -1347 226 284 26 43 chr4 93396534 93396650 -108931697 + HAL1 LINE L1 1271 1384 -1123 2107 94 31 3 chr4 93397266 93397553 -108930794 - AluSg SINE Alu -15 295 1 191 262 0 0 chr4 93398133 93398175 -108930172 - MIR SINE MIR -171 91 50 1404 103 152 25 chr4 93398738 93398981 -108929366 + AluSg1 SINE Alu 1 274 -35 2682 148 64 23 chr4 93400184 93400745 -108927602 + L1MB7 LINE L1 5593 6176 -8 301 223 116 91 chr4 93400817 93400938 -108927409 + HAL1 LINE L1 3 126 -2381 312 320 31 0 chr4 93402526 93402623 -108925724 + MIR SINE MIR 47 146 -116 1331 236 77 40 chr4 93402625 93402977 -108925370 - MLT1E2 LTR MaLR -2 624 260 27 0 0 0 chr4 93403325 93403352 -108924995 + AT_rich Low_complexity Low_complexity 1 27 0 587 267 7 13 chr4 93404273 93404423 -108923924 + L2 LINE L2 3165 3313 0 615 270 143 29 chr4 93404452 93405091 -108923256 + L2 LINE L2 2527 3224 -89 1922 152 84 36 chr4 93405095 93405637 -108922710 - MLT2A2 LTR ERVL 0 554 1 1907 147 10 3 chr4 93406055 93406348 -108921999 - AluJo SINE Alu -17 295 1 308 237 26 0 chr4 93407132 93407208 -108921139 + MER116 DNA Mariner 3 80 0 2373 65 0 0 chr4 93407632 93407924 -108920423 + AluY SINE Alu 1 292 -19 448 293 138 31 chr4 93408105 93408525 -108919822 + L1ME4a LINE L1 5255 5719 -402 220 229 24 84 chr4 93408530 93408613 -108919734 - MIR SINE MIR -178 84 7 * 1034 210 49 16 chr4 93408542 93408785 -108919562 + MIR SINE MIR 12 262 0 1993 114 43 0 chr4 93408811 93409092 -108919255 + AluSg SINE Alu 1 293 -17 385 310 39 56 chr4 93409112 93409502 -108918845 + L1ME4a LINE L1 5737 6119 -2 683 288 53 43 chr4 93412059 93412340 -108916007 + LTR16A LTR ERVL 161 444 -6 451 242 59 52 chr4 93412459 93412612 -108915735 + L1MC4a LINE L1 5286 5439 -731 4332 204 39 7 chr4 93412613 93413794 -108914553 + L1MB8 LINE L1 4338 5551 -633 3133 167 16 28 chr4 93413957 93414599 -108913748 + L1MB8 LINE L1 5543 6176 -2 1321 309 159 50 chr4 93414605 93415253 -108913094 + L1MC4a LINE L1 5425 6001 -1807 2252 111 0 0 chr4 93415253 93415550 -108912797 - AluSx SINE Alu -15 297 1 1321 309 159 50 chr4 93415550 93416689 -108911658 + L1MC4a LINE L1 6001 7406 -402 2253 32 58 0 chr4 93416693 93416970 -108911377 + AluY SINE Alu 6 298 -13 832 104 97 0 chr4 93417129 93417263 -108911084 + L1PA10 LINE L1 6017 6163 -5 490 299 97 23 chr4 93417365 93417673 -108910674 + L1MC4 LINE L1 7595 7925 -117 358 290 84 42 chr4 93417721 93417983 -108910364 + L1M4 LINE L1 3045 3317 -2829 1941 104 4 4 chr4 93418053 93418346 -108910001 + AluSx SINE Alu 14 306 0 1974 150 7 0 chr4 93418434 93418727 -108909620 + AluJb SINE Alu 1 295 -17 254 102 0 0 chr4 93418729 93418778 -108909569 + L1MB4 LINE L1 6132 6180 0 872 72 32 0 chr4 93420427 93420552 -108907795 + AluY SINE Alu 157 285 -26 276 0 0 51 chr4 93420669 93420708 -108907639 - L1HS LINE L1 -43 6112 6076 1534 194 3 37 chr4 93420714 93421013 -108907334 - AluJo SINE Alu -23 289 1 2636 161 20 64 chr4 93421062 93421190 -108907157 + Tigger7 DNA MER2_type 1 133 -2354 2010 113 27 30 chr4 93421190 93421491 -108906856 - AluSq SINE Alu -13 300 1 2636 161 20 64 chr4 93421491 93421865 -108906482 + Tigger7 DNA MER2_type 133 481 -2006 416 248 21 28 chr4 93421871 93422016 -108906331 - FRAM SINE Alu 0 40 1 3092 185 22 3 chr4 93422135 93422756 -108905591 + L1MB4 LINE L1 5548 6180 0 535 281 70 53 chr4 93423192 93423391 -108904956 + HAL1b LINE L1 292 501 -847 2437 99 0 0 chr4 93423391 93423704 -108904643 + AluSp SINE Alu 1 313 0 535 281 70 53 chr4 93423704 93423845 -108904502 + HAL1b LINE L1 501 638 -710 24 0 0 0 chr4 93423879 93423903 -108904444 + AT_rich Low_complexity Low_complexity 1 24 0 398 292 220 8 chr4 93423907 93424143 -108904204 + L3 LINE CR1 1166 1451 -126 1853 182 0 0 chr4 93424218 93424515 -108903832 + AluJo SINE Alu 1 297 -15 26 30 0 0 chr4 93424547 93424580 -108903767 + AT_rich Low_complexity Low_complexity 1 33 0 247 186 34 0 chr4 93424618 93424677 -108903670 + L1ME LINE L1 5537 5597 -524 234 286 112 50 chr4 93425095 93425335 -108903012 + L1M4b LINE L1 20 536 -6319 3204 203 102 7 chr4 93425401 93426253 -108902094 + L1MB7 LINE L1 5234 6174 -10 31 0 0 0 chr4 93426321 93426352 -108901995 + AT_rich Low_complexity Low_complexity 1 31 0 948 196 0 0 chr4 93426766 93426924 -108901423 + FRAM SINE Alu 1 158 -18 1089 129 6 6 chr4 93427310 93427473 -108900874 - AluSg/x SINE Alu -16 294 132 1677 163 29 23 chr4 93427846 93428153 -108900194 - AluSx SINE Alu -1 311 3 2054 136 3 3 chr4 93428295 93428590 -108899757 + AluSx SINE Alu 1 295 -17 1963 182 8 16 chr4 93428753 93429121 -108899226 - MLT1A1 LTR MaLR 0 365 1 263 271 102 23 chr4 93429331 93429508 -108898839 + HAL1 LINE L1 2244 2434 -73 755 196 0 14 chr4 93429511 93429649 -108898698 - FLAM_C SINE Alu -7 136 1 2059 159 0 0 chr4 93429661 93429963 -108898384 - AluSx SINE Alu -10 302 1 200 357 89 27 chr4 93430309 93430421 -108897926 - MER5B DNA MER1_type -24 154 36 6154 97 15 0 chr4 93430433 93431794 -108896553 - L1PA14 LINE L1 0 6161 4792 1870 218 204 41 chr4 93431941 93432626 -108895721 - LTR1B LTR ERV1 0 826 30 454 267 40 40 chr4 93432635 93432667 -108895680 - MIR SINE MIR -108 154 123 1834 239 90 8 chr4 93432667 93433191 -108895156 + MLT1F1 LTR MaLR 1 567 0 454 267 40 40 chr4 93433191 93433308 -108895039 - MIR SINE MIR -138 124 5 21 0 0 0 chr4 93433693 93433714 -108894633 + AT_rich Low_complexity Low_complexity 1 21 0 1490 204 56 21 chr4 93433720 93434097 -108894250 + MLT1B LTR MaLR 1 390 0 333 296 179 31 chr4 93434099 93434322 -108894025 + MIR SINE MIR 2 257 -5 2527 161 6 65 chr4 93434682 93434969 -108893378 + LTR24 LTR ERV1 1 248 -219 3607 168 35 22 chr4 93434969 93435679 -108892668 - LTR62 LTR ERVK 0 719 1 2527 161 6 65 chr4 93435679 93435887 -108892460 + LTR24 LTR ERV1 248 467 0 2209 111 3 0 chr4 93436374 93436671 -108891676 - AluSx SINE Alu -14 298 1 802 114 13 44 chr4 93436759 93436917 -108891430 + L1MB4 LINE L1 6028 6180 0 32 0 0 0 chr4 93437081 93437113 -108891234 + AT_rich Low_complexity Low_complexity 1 32 0 225 117 39 39 chr4 93438786 93438863 -108889484 + (TA)n Simple_repeat Simple_repeat 1 77 0 1935 133 3 0 chr4 93439014 93439298 -108889049 + Tigger3b DNA MER2_type 1 285 -946 4227 181 74 12 chr4 93439298 93439624 -108888723 + MER6 DNA MER2_type 1 306 -559 222 37 0 0 chr4 93439624 93439651 -108888696 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 4227 181 74 12 chr4 93439651 93440023 -108888324 + MER6 DNA MER2_type 306 758 -107 6400 119 42 17 chr4 93440023 93441068 -108887279 + MER11C LTR ERVK 1 1071 0 4227 181 74 12 chr4 93441068 93441182 -108887165 + MER6 DNA MER2_type 758 864 -1 264 98 59 0 chr4 93441182 93441226 -108887121 + Tigger3b DNA MER2_type 283 329 -902 228 93 0 200 chr4 93441245 93441320 -108887027 + Tigger3b DNA MER2_type 303 362 -869 246 197 15 45 chr4 93441368 93441500 -108886847 + (CATATA)n Simple_repeat Simple_repeat 2 129 0 4819 138 29 44 chr4 93441506 93442145 -108886202 + Tigger3b DNA MER2_type 341 963 -2065 1756 184 3 0 chr4 93442145 93442444 -108885903 - AluJb SINE Alu -4 308 9 4819 138 29 44 chr4 93442444 93442709 -108885638 + Tigger3b DNA MER2_type 963 1231 0 22 56 0 0 chr4 93442973 93443009 -108885338 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr4 93443473 93443497 -108884850 + AT_rich Low_complexity Low_complexity 1 24 0 2142 136 31 31 chr4 93443619 93444009 -108884338 + MLT1B LTR MaLR 1 390 0 2343 112 0 0 chr4 93444994 93445297 -108883050 + AluSq SINE Alu 1 303 -10 28 29 0 0 chr4 93445719 93445754 -108882593 + AT_rich Low_complexity Low_complexity 1 35 0 766 172 0 8 chr4 93445798 93445932 -108882415 - FLAM_C SINE Alu 0 133 1 194 250 0 0 chr4 93446735 93446775 -108881572 - L2 LINE L2 -206 3066 3027 700 209 32 0 chr4 93446821 93446979 -108881368 + MER69A DNA AcHobo 15 177 0 26 30 0 0 chr4 93447729 93447762 -108880585 + AT_rich Low_complexity Low_complexity 1 33 0 201 344 90 57 chr4 93447770 93447892 -108880455 - L2 LINE L2 -1 3271 3146 1732 253 63 25 chr4 93448072 93448642 -108879705 + MLT1E LTR MaLR 1 592 -1 262 253 0 93 chr4 93450095 93450170 -108878177 + L2 LINE L2 3195 3262 -10 298 298 36 65 chr4 93450305 93450473 -108877874 - MER5B DNA MER1_type -15 163 1 609 257 103 73 chr4 93450590 93450760 -108877587 + L1MC4a LINE L1 5521 5684 -2124 2782 22 3 0 chr4 93450760 93451077 -108877270 - AluYb8 SINE Alu 0 318 1 609 257 103 73 chr4 93451077 93451276 -108877071 + L1MC4a LINE L1 5684 5901 -1907 36 62 0 0 chr4 93451458 93451522 -108876825 + AT_rich Low_complexity Low_complexity 1 64 0 2073 120 11 17 chr4 93451983 93452334 -108876013 - THE1C LTR MaLR -26 349 1 1183 112 0 5 chr4 93452552 93452739 -108875608 - Tigger7 DNA MER2_type 0 2491 2306 1214 234 25 38 chr4 93452740 93453056 -108875291 + AluJo SINE Alu 1 312 0 2227 156 27 0 chr4 93453062 93453434 -108874913 - Tigger7 DNA MER2_type -2006 481 100 1527 106 35 35 chr4 93453436 93453662 -108874685 + AluSx SINE Alu 1 226 -86 25 0 0 0 chr4 93455154 93455179 -108873168 + AT_rich Low_complexity Low_complexity 1 25 0 247 281 106 12 chr4 93455425 93455585 -108872762 - MIR SINE MIR -21 241 67 23 33 0 0 chr4 93456188 93456218 -108872129 + AT_rich Low_complexity Low_complexity 1 30 0 924 249 75 0 chr4 93456232 93456473 -108871874 + MIR SINE MIR 3 261 -1 2247 59 0 81 chr4 93456813 93457134 -108871213 + AluY SINE Alu 1 295 -16 194 388 150 7 chr4 93457306 93457453 -108870894 - MIR3 SINE MIR -1 207 40 198 0 0 0 chr4 93458012 93458034 -108870313 + (TC)n Simple_repeat Simple_repeat 2 23 0 467 300 69 49 chr4 93458122 93458369 -108869978 - MIR SINE MIR 0 262 11 223 329 26 71 chr4 93458615 93458689 -108869658 - MIR SINE MIR -1 261 196 4823 131 62 14 chr4 93458689 93459475 -108868872 + L1PA16 LINE L1 4873 5726 -440 2241 105 7 0 chr4 93459475 93459770 -108868577 + AluSx SINE Alu 1 297 -15 4823 131 62 14 chr4 93459770 93460234 -108868113 + L1PA16 LINE L1 5726 6166 0 223 329 26 71 chr4 93460234 93460314 -108868033 - MIR SINE MIR -66 196 114 197 86 57 0 chr4 93460323 93460358 -108867989 + A-rich Low_complexity Low_complexity 2 38 0 208 195 49 0 chr4 93460358 93460399 -108867948 + polypurine Low_complexity Low_complexity 2 44 0 1760 149 135 6 chr4 93460442 93460791 -108867556 + MSTA LTR MaLR 1 394 -34 8448 173 26 18 chr4 93460894 93462525 -108865822 + MSTA-int LTR MaLR 7 1651 0 1496 186 175 8 chr4 93462525 93462890 -108865457 + MSTB LTR MaLR 1 426 0 181 307 0 91 chr4 93462890 93462978 -108865369 - MIR SINE MIR -177 85 6 556 244 50 113 chr4 93463289 93463953 -108864394 + L1MC4 LINE L1 6853 7474 -568 267 228 105 20 chr4 93464038 93464193 -108864154 + L1MC4 LINE L1 7508 7687 -308 1138 201 34 0 chr4 93464218 93464482 -108863865 + L1MC2 LINE L1 6070 6342 -2 585 128 0 0 chr4 93464491 93464577 -108863770 + AluJo SINE Alu 1 86 -226 1169 130 50 80 chr4 93464619 93464857 -108863490 + AluJo SINE Alu 77 307 -5 1823 129 80 17 chr4 93465598 93465944 -108862403 + MLT2A2 LTR ERVL 1 304 -149 1820 103 34 0 chr4 93465965 93466256 -108862091 + L1MA4A LINE L1 5997 6297 -6 848 86 86 0 chr4 93466277 93466405 -108861942 + MER85 DNA T2_type 1 139 0 2206 114 3 0 chr4 93466518 93466815 -108861532 + AluSx SINE Alu 1 298 -14 1360 199 41 57 chr4 93468583 93468670 -108859677 + L1M3 LINE L1 5095 5182 -1001 1790 167 10 13 chr4 93468670 93468794 -108859553 + AluJo SINE Alu 1 124 -188 216 0 0 0 chr4 93468794 93468818 -108859529 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 1790 167 10 13 chr4 93468818 93468999 -108859348 + AluJo SINE Alu 124 305 -7 1360 199 41 57 chr4 93468999 93469407 -108858940 + L1M3 LINE L1 5182 5577 -606 10631 98 4 1 chr4 93469603 93471918 -108856429 + L1PA8A LINE L1 3724 6046 -85 3339 159 114 18 chr4 93474651 93475369 -108852978 - LTR48 LTR ERV1 0 787 1 357 102 0 0 chr4 93475480 93475539 -108852808 + (TG)n Simple_repeat Simple_repeat 1 59 0 1315 183 0 4 chr4 93476534 93476775 -108851572 + MLT-int LTR MaLR 244 483 -1252 406 108 204 0 chr4 93476798 93476891 -108851456 - LTR48 LTR ERV1 -423 364 253 2861 244 92 71 chr4 93476914 93477331 -108851016 + MLT-int LTR MaLR 460 867 -868 1354 38 0 0 chr4 93477331 93477491 -108850856 + L1PA3 LINE L1 5993 6152 -3 2861 244 92 71 chr4 93477491 93478310 -108850037 + MLT-int LTR MaLR 867 1722 -13 6029 122 22 9 chr4 93478419 93479488 -108848859 + L1P LINE L1 2346 3428 -2718 2005 164 26 0 chr4 93479599 93479903 -108848444 - AluJb SINE Alu 0 312 1 387 226 0 0 chr4 93481631 93481733 -108846614 - MER3 DNA MER1_type -25 184 83 341 219 0 0 chr4 93481771 93481844 -108846503 - AluJ/F(R)AM SINE Alu -95 207 135 1428 145 0 18 chr4 93481844 93482072 -108846275 - AluJb SINE Alu 0 312 89 21 110 0 0 chr4 93483766 93483857 -108844490 + GC_rich Low_complexity Low_complexity 1 91 0 17981 156 71 15 chr4 93484938 93489715 -108838632 - L1PA3 LINE L1 -70 6400 1187 189 74 0 0 chr4 93489715 93489742 -108838605 + (TTG)n Simple_repeat Simple_repeat 1 27 0 17981 156 71 15 chr4 93489742 93490483 -108837864 - L1PA3 LINE L1 -5283 1187 488 292 236 146 45 chr4 93490554 93490821 -108837526 - L1ME4a LINE L1 -220 5901 5608 770 201 5 67 chr4 93491104 93491298 -108837049 + MER57B LTR ERV1 1 182 -252 2369 125 103 9 chr4 93492633 93493058 -108835289 + Tigger3(Golem) DNA MER2_type 2557 3021 -8 2347 92 2 37 chr4 93493060 93493606 -108834741 + MER51A LTR ERV1 1 619 -15 284 292 9 35 chr4 93494309 93494422 -108833925 + CT-rich Low_complexity Low_complexity 5 114 0 2161 100 7 0 chr4 93494871 93495161 -108833186 + AluSx SINE Alu 1 292 -20 556 321 80 31 chr4 93495309 93495698 -108832649 - L1MEd LINE L1 -5423 696 289 355 269 59 59 chr4 93495878 93496097 -108832250 - L1ME3A LINE L1 -32 6138 5920 486 65 0 0 chr4 93496214 93496276 -108832071 - U6 snRNA snRNA -45 62 1 224 258 48 0 chr4 93496341 93496403 -108831944 + L2 LINE L2 1882 1946 -1368 380 252 35 0 chr4 93496602 93496717 -108831630 - L2 LINE L2 0 3313 3195 312 320 105 28 chr4 93497372 93497553 -108830794 + L2 LINE L2 2110 2304 -1010 225 313 30 0 chr4 93499545 93499644 -108828703 + Tigger3(Golem) DNA MER2_type 1435 1536 -1493 252 292 39 69 chr4 93500381 93500511 -108827836 + L2 LINE L2 3168 3293 -20 463 177 183 67 chr4 93501171 93501335 -108827012 + MIR SINE MIR 80 262 0 2152 96 41 3 chr4 93501451 93501744 -108826603 + AluSx SINE Alu 1 304 -8 305 362 57 28 chr4 93503291 93503432 -108824915 + MIR3 SINE MIR 10 154 -54 518 194 32 0 chr4 93503891 93503984 -108824363 - AluJb SINE Alu -88 224 129 1266 117 0 0 chr4 93503984 93504164 -108824183 - AluSg/x SINE Alu 0 310 131 293 29 14 167 chr4 93504336 93504760 -108823587 + (TA)n Simple_repeat Simple_repeat 1 359 0 372 345 109 13 chr4 93504924 93505162 -108823185 - MIR SINE MIR 0 262 2 2896 165 121 9 chr4 93505617 93506272 -108822075 + L1MB7 LINE L1 5306 6033 -151 1898 182 21 0 chr4 93506390 93506730 -108821617 + MER7A DNA MER2_type 2 346 0 1315 260 74 31 chr4 93506893 93507381 -108820966 + MER90 LTR ERV1 53 561 -14 1116 179 11 0 chr4 93507453 93507643 -108820704 + AluJo SINE Alu 1 192 -120 2208 114 0 0 chr4 93507681 93507971 -108820376 + AluSq SINE Alu 1 290 -23 303 264 47 19 chr4 93507981 93508087 -108820260 + L1ME4a LINE L1 5980 6088 -33 293 269 26 13 chr4 93508184 93508262 -108820085 - MER5A DNA MER1_type -4 185 107 26 30 0 0 chr4 93509043 93509076 -108819271 + AT_rich Low_complexity Low_complexity 1 33 0 2068 142 12 24 chr4 93509186 93509525 -108818822 + MER1B DNA MER1_type 3 337 0 1893 160 3 10 chr4 93509763 93510069 -108818278 - AluJb SINE Alu -8 304 1 21 57 0 0 chr4 93510453 93510488 -108817859 + AT_rich Low_complexity Low_complexity 1 35 0 1673 148 0 47 chr4 93510666 93510943 -108817404 - AluJo SINE Alu -48 264 1 1646 165 30 0 chr4 93510950 93511247 -108817100 + L1MC1 LINE L1 6023 6328 -5 410 155 14 0 chr4 93511346 93511417 -108816930 - MER21B LTR ERV1 -107 756 685 426 170 185 43 chr4 93511459 93511564 -108816783 - LTR18A LTR ERVL 0 601 512 477 0 0 0 chr4 93511564 93511617 -108816730 + (TC)n Simple_repeat Simple_repeat 2 54 0 426 170 185 43 chr4 93511617 93511695 -108816652 - LTR18A LTR ERVL -89 512 254 692 262 59 15 chr4 93511773 93511975 -108816372 - LTR18A LTR ERVL -146 211 1 559 148 0 0 chr4 93511976 93512064 -108816283 - HERVL18 LTR ERVL 0 6047 5960 * 1483 126 104 26 chr4 93512043 93512127 -108816220 - HERVL18 LTR ERVL -1364 4683 4607 2731 71 17 3 chr4 93512127 93512477 -108815870 - THE1A LTR MaLR 0 355 1 1483 126 104 26 chr4 93512477 93512661 -108815686 - HERVL18 LTR ERVL -1440 4607 4394 9557 128 3 13 chr4 93512663 93514138 -108814209 - HERVL18 LTR ERVL -2468 3579 2119 2685 116 7 10 chr4 93514137 93514589 -108813758 - HERVL18 LTR ERVL -4237 1810 1324 * 1633 204 2 0 chr4 93514589 93515117 -108813230 - HERVL18 LTR ERVL -5354 693 96 610 205 31 22 chr4 93515187 93515403 -108812944 - LTR18A LTR ERVL 0 601 244 659 258 81 15 chr4 93515469 93515667 -108812680 - LTR18A LTR ERVL -146 211 1 1440 206 133 89 chr4 93515667 93516248 -108812099 - MER21B LTR ERV1 -257 606 1 258 313 229 15 chr4 93516574 93516661 -108811686 - MIR SINE MIR -56 206 139 1858 137 65 3 chr4 93516661 93516954 -108811393 + AluSx SINE Alu 1 311 -1 258 313 229 15 chr4 93516954 93516997 -108811350 - MIR SINE MIR -123 139 48 896 295 36 13 chr4 93517195 93517500 -108810847 + AluJb SINE Alu 1 312 0 21 57 0 0 chr4 93517659 93517694 -108810653 + AT_rich Low_complexity Low_complexity 1 35 0 273 313 6 92 chr4 93518337 93518351 -108809996 + L2 LINE L2 2882 2896 -376 2582 124 69 43 chr4 93518351 93518843 -108809504 + MLT1D LTR MaLR 1 505 0 273 313 6 92 chr4 93518843 93518991 -108809356 + L2 LINE L2 2896 3030 -242 594 0 0 0 chr4 93519100 93519166 -108809181 + (TG)n Simple_repeat Simple_repeat 1 66 0 1919 148 7 3 chr4 93519181 93519472 -108808875 - AluJb SINE Alu -14 298 7 302 285 139 7 chr4 93520185 93520322 -108808025 - MIR SINE MIR -48 214 60 198 0 0 0 chr4 93520323 93520345 -108808002 + (TTA)n Simple_repeat Simple_repeat 3 24 0 20684 93 17 6 chr4 93520345 93520682 -108807665 - L1PA7 LINE L1 -18 6136 5804 2357 83 3 3 chr4 93520682 93520982 -108807365 - AluY SINE Alu -11 300 1 20684 93 17 6 chr4 93520982 93524539 -108803808 - L1PA7 LINE L1 -350 5804 2205 1851 162 7 0 chr4 93524539 93524835 -108803512 - AluJo SINE Alu -14 298 1 693 177 28 0 chr4 93524839 93524980 -108803367 - L1MC1 LINE L1 -208 6125 5981 1267 207 83 13 chr4 93525125 93525439 -108802908 - LTR48B LTR ERV1 -308 336 1 212 143 0 82 chr4 93525606 93525655 -108802692 + L2 LINE L2 3269 3313 0 8473 117 83 59 chr4 93526138 93528320 -108800027 + L1P3 LINE L1 10 2523 -3938 1826 108 12 0 chr4 93528320 93528571 -108799776 + AluY SINE Alu 44 297 -14 8473 117 83 59 chr4 93528571 93528694 -108799653 + L1P3 LINE L1 2523 2641 -3820 1248 109 25 0 chr4 93528794 93529033 -108799314 - Tigger3(Golem) DNA MER2_type -467 2562 2318 972 243 78 0 chr4 93529308 93529526 -108798821 + MIR SINE MIR 2 236 -26 287 272 79 20 chr4 93530113 93530286 -108798061 - L1M4c LINE L1 -994 1749 1367 5919 191 48 35 chr4 93530286 93531547 -108796800 + Charlie6 DNA MER1_type 1556 2844 -656 1359 106 39 10 chr4 93531547 93531755 -108796592 - L1PA11 LINE L1 -2 6172 5959 5919 191 48 35 chr4 93531755 93532077 -108796270 + Charlie6 DNA MER1_type 2844 3160 -340 683 297 90 9 chr4 93532082 93532503 -108795844 + LTR16B LTR ERVL 7 461 -3 1169 191 86 25 chr4 93532505 93532830 -108795517 + Charlie6 DNA MER1_type 3155 3499 -1 1641 133 74 35 chr4 93532991 93533276 -108795071 + AluJo SINE Alu 5 300 -12 504 206 130 111 chr4 93533535 93533575 -108794772 + MIR SINE MIR 16 54 -208 1810 174 3 3 chr4 93533575 93533879 -108794468 + AluJb SINE Alu 5 308 -4 504 206 130 111 chr4 93533879 93534071 -108794276 + MIR SINE MIR 54 248 -14 23 0 0 0 chr4 93534173 93534196 -108794151 + AT_rich Low_complexity Low_complexity 1 23 0 302 364 131 11 chr4 93534235 93534411 -108793936 - HAL1 LINE L1 -1931 576 380 2249 190 23 66 chr4 93534448 93535023 -108793324 - MLT2B3 LTR ERVL -4 550 1 525 250 103 0 chr4 93535904 93536040 -108792307 - MIR SINE MIR -56 206 57 21 0 0 0 chr4 93537003 93537024 -108791323 + AT_rich Low_complexity Low_complexity 1 21 0 1736 136 124 15 chr4 93538110 93538448 -108789899 + THE1C LTR MaLR 1 375 0 6183 106 0 39 chr4 93538541 93539572 -108788775 - L1PA15 LINE L1 -4 6161 5134 5690 125 32 11 chr4 93539680 93540362 -108787985 - HSMAR2 DNA Mariner -318 984 274 2021 110 35 3 chr4 93540362 93540652 -108787695 - AluSx SINE Alu -13 299 1 5690 125 32 11 chr4 93540652 93540924 -108787423 - HSMAR2 DNA Mariner -1028 274 9 1034 274 13 0 chr4 93541086 93541323 -108787024 + MIR SINE MIR 10 249 -13 652 89 0 0 chr4 93541462 93541552 -108786795 - THE1B LTR MaLR 0 364 275 2436 190 231 23 chr4 93541552 93542552 -108785795 - MER52A LTR ERV1 -2 1276 58 229 315 0 0 chr4 93542743 93542816 -108785531 - MER52A LTR ERV1 -1682 73 1 * 1889 121 0 0 chr4 93542816 93543096 -108785251 - THE1B LTR MaLR -84 280 1 1837 179 66 35 chr4 93543206 93543659 -108784688 + MLT1C LTR MaLR 1 467 0 2324 113 0 0 chr4 93543877 93544177 -108784170 + AluSq SINE Alu 1 300 -13 21 0 0 0 chr4 93544285 93544306 -108784041 + AT_rich Low_complexity Low_complexity 1 21 0 282 321 9 19 chr4 93544366 93544472 -108783875 - MIR3 SINE MIR -1 207 103 8613 55 7 8 chr4 93544495 93545568 -108782779 + MER11C LTR ERVK 1 1071 0 1545 113 46 7 chr4 93546293 93546575 -108781772 + L1MA7 LINE L1 5999 6291 0 455 312 50 25 chr4 93546589 93546788 -108781559 - MIR SINE MIR -26 236 33 21 36 0 0 chr4 93547203 93547231 -108781116 + AT_rich Low_complexity Low_complexity 1 28 0 194 330 176 0 chr4 93547513 93547604 -108780743 - MIR SINE MIR -109 153 47 21 0 0 0 chr4 93547902 93547923 -108780424 + AT_rich Low_complexity Low_complexity 1 21 0 1304 126 40 0 chr4 93548395 93548593 -108779754 + AluSg/x SINE Alu 95 300 -12 285 98 0 0 chr4 93548839 93548880 -108779467 - MLT2F LTR ERVL 0 663 623 333 68 0 0 chr4 93548880 93548924 -108779423 + (TA)n Simple_repeat Simple_repeat 2 45 0 267 191 43 17 chr4 93548961 93549076 -108779271 + (TA)n Simple_repeat Simple_repeat 1 118 0 414 52 117 0 chr4 93549135 93549289 -108779058 + (TA)n Simple_repeat Simple_repeat 2 173 0 265 0 123 0 chr4 93549309 93549374 -108778973 + (TA)n Simple_repeat Simple_repeat 2 74 0 1119 241 68 10 chr4 93549398 93549709 -108778638 - MLT2F LTR ERVL -49 614 286 199 271 71 14 chr4 93549787 93549857 -108778490 + L2 LINE L2 3197 3270 -2 439 113 25 0 chr4 93549888 93549968 -108778379 + GA-rich Low_complexity Low_complexity 1 82 0 22 0 0 0 chr4 93550129 93550151 -108778196 + AT_rich Low_complexity Low_complexity 1 22 0 476 218 18 0 chr4 93550383 93550493 -108777854 + Charlie4 DNA MER1_type 14 125 -1836 1322 168 139 38 chr4 93550625 93550964 -108777383 - MER93b LTR ERV1 0 373 1 383 277 178 40 chr4 93551721 93552075 -108776272 - L1M4 LINE L1 -3526 2620 2218 2067 145 0 0 chr4 93552076 93552380 -108775967 - AluSx SINE Alu -8 304 1 287 268 93 70 chr4 93552656 93553011 -108775336 - HAL1b LINE L1 -625 723 361 326 283 19 0 chr4 93553421 93553527 -108774820 - LTR43 LTR ERV1 -306 296 189 1147 172 60 13 chr4 93554450 93554683 -108773664 - MER45C DNA AcHobo 0 953 710 1141 283 83 22 chr4 93554718 93555038 -108773309 - MER45C DNA AcHobo -330 623 265 2000 85 4 0 chr4 93555038 93555298 -108773049 + AluY SINE Alu 34 294 -17 1141 283 83 22 chr4 93555298 93555433 -108772914 - MER45C DNA AcHobo -688 265 140 207 0 0 0 chr4 93556190 93556213 -108772134 + (A)n Simple_repeat Simple_repeat 1 23 0 571 241 29 6 chr4 93556338 93556508 -108771839 + MER34 LTR ERV1 1 174 -368 1297 241 67 74 chr4 93556508 93556873 -108771474 - LTR38 LTR ERV1 -9 547 186 2041 70 63 46 chr4 93556873 93557175 -108771172 - AluY SINE Alu -4 307 1 1297 241 67 74 chr4 93557175 93557360 -108770987 - LTR38 LTR ERV1 -370 186 1 1936 166 18 29 chr4 93557831 93558241 -108770106 - MER49 LTR ERV1 -170 753 311 2410 52 13 23 chr4 93558241 93558547 -108769800 - AluY SINE Alu -8 303 1 1936 166 18 29 chr4 93558547 93558855 -108769492 - MER49 LTR ERV1 -612 311 1 1391 138 24 16 chr4 93558912 93559158 -108769189 + LOR1-int LTR ERV1 6829 7076 -1044 855 261 171 30 chr4 93559158 93559526 -108768821 + MER21B LTR ERV1 320 739 -124 959 147 28 66 chr4 93559902 93560113 -108768234 + L1MC3 LINE L1 7403 7605 -180 357 93 0 40 chr4 93560266 93560341 -108768006 + (TA)n Simple_repeat Simple_repeat 1 72 0 2345 69 3 0 chr4 93560342 93560631 -108767716 - AluY SINE Alu -21 290 1 361 331 44 34 chr4 93560999 93561292 -108767055 + MER21B-int LTR ERV1 152 447 -4200 361 336 57 23 chr4 93561510 93561973 -108766374 + MER89-int LTR ERV1 2840 4066 -3825 309 355 0 0 chr4 93562444 93562537 -108765810 + MER89-int LTR ERV1 3785 3877 -2924 1217 238 84 79 chr4 93562628 93563162 -108765185 + MER89-int LTR ERV1 5285 5821 -1716 2408 106 0 3 chr4 93563191 93563502 -108764845 + AluSg SINE Alu 1 310 0 697 185 0 0 chr4 93563614 93563744 -108764603 + MER57B LTR ERV1 141 270 -164 429 217 62 81 chr4 93563827 93563988 -108764359 + MER57A LTR ERV1 246 403 0 253 300 0 0 chr4 93563988 93564058 -108764289 + MIR SINE MIR 167 236 -26 468 336 64 44 chr4 93564257 93564617 -108763730 + MLT1J LTR MaLR 76 442 -69 473 191 0 22 chr4 93565012 93565101 -108763246 + MER21B LTR ERV1 1 87 -776 2443 205 117 33 chr4 93565117 93565843 -108762504 + MER21B LTR ERV1 8 794 -69 21 100 0 0 chr4 93565904 93565974 -108762373 + AT_rich Low_complexity Low_complexity 1 70 0 2141 109 13 3 chr4 93566126 93566430 -108761917 - AluSq SINE Alu -6 307 1 248 193 0 35 chr4 93568553 93568610 -108759737 + MER58B DNA MER1_type 4 58 -283 * 734 179 7 33 chr4 93568585 93568736 -108759611 + MER58B DNA MER1_type 195 341 0 1652 146 40 20 chr4 93569394 93569696 -108758651 + MER44D DNA MER2_type 32 609 0 2056 148 47 18 chr4 93570730 93571115 -108757232 + MSTD LTR MaLR 1 396 0 1623 182 28 27 chr4 93571405 93571856 -108756491 - LTR2B LTR ERV1 0 490 1 308 284 0 0 chr4 93572014 93572095 -108756252 - MER94 DNA DNA -18 116 36 445 250 8 26 chr4 93572397 93572672 -108755675 + L1ME LINE L1 866 1152 -5073 234 0 0 0 chr4 93572684 93572710 -108755637 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 2968 164 32 6 chr4 93572908 93573415 -108754932 - MLT2B1 LTR ERVL 0 520 1 624 281 26 57 chr4 93573416 93573800 -108754547 + L1ME LINE L1 1435 1806 -4590 450 183 0 0 chr4 93573904 93573986 -108754361 - L1M4 LINE L1 -552 5632 5551 472 293 105 31 chr4 93575106 93575531 -108752816 + MLT1H LTR MaLR 7 513 -36 1304 182 46 89 chr4 93575816 93576207 -108752140 + MLT1A2 LTR MaLR 1 374 0 549 249 90 41 chr4 93576236 93576481 -108751866 - MIR SINE MIR -4 258 2 1240 234 118 36 chr4 93577972 93578420 -108749927 - MLT1F LTR MaLR 0 542 58 1733 218 85 44 chr4 93578424 93578817 -108749530 - MLT1F LTR MaLR 0 542 122 2039 192 58 50 chr4 93578817 93579318 -108749029 - MLT1D LTR MaLR 0 505 1 1733 218 85 44 chr4 93579318 93579442 -108748905 - MLT1F LTR MaLR -420 122 4 1639 110 0 0 chr4 93579445 93579663 -108748684 - AluJb SINE Alu -12 300 83 385 303 97 20 chr4 93579809 93580004 -108748343 - MIR SINE MIR 0 262 53 329 267 22 0 chr4 93581656 93581746 -108746601 - MIR SINE MIR -13 249 158 626 179 53 33 chr4 93582490 93582672 -108745675 + L1P4 LINE L1 5633 5812 -356 203 289 77 29 chr4 93582680 93582784 -108745563 - MIR SINE MIR -56 206 98 289 360 82 7 chr4 93582785 93582932 -108745415 + MIR3 SINE MIR 14 171 -37 205 51 51 0 chr4 93583388 93583427 -108744920 + (TA)n Simple_repeat Simple_repeat 1 41 0 2335 175 107 11 chr4 93583432 93583992 -108744355 - L1MB7 LINE L1 -20 6164 5551 21 36 0 0 chr4 93584666 93584694 -108743653 + AT_rich Low_complexity Low_complexity 1 28 0 441 129 0 0 chr4 93585311 93585373 -108742974 - FLAM_A SINE Alu -67 65 4 1031 256 179 18 chr4 93585379 93585925 -108742422 + L1MC4a LINE L1 5362 5995 -1813 386 143 0 39 chr4 93585938 93586015 -108742332 + Tigger4(Zombi) DNA MER2_type 2658 2731 0 365 328 82 0 chr4 93587469 93587603 -108740744 + MIR SINE MIR 97 241 -21 463 104 0 0 chr4 93587765 93587832 -108740515 + AluJb SINE Alu 67 133 -179 1631 191 7 11 chr4 93588066 93588374 -108739973 - AluJo SINE Alu 0 307 1 361 250 154 15 chr4 93588546 93588682 -108739665 + MIR SINE MIR 54 208 -54 2106 85 27 24 chr4 93589507 93589802 -108738545 + AluSx SINE Alu 1 296 -16 2455 176 47 79 chr4 93590085 93590831 -108737516 + MER50 LTR ERV1 13 734 0 304 247 56 27 chr4 93591896 93592045 -108736302 + MIR3 SINE MIR 28 185 -23 307 316 126 29 chr4 93592207 93592413 -108735934 + MIR SINE MIR 36 261 -1 772 284 19 14 chr4 93592451 93592659 -108735688 + MIR SINE MIR 31 239 -23 1533 209 7 7 chr4 93592830 93593127 -108735220 - AluJo SINE Alu -15 297 1 189 176 0 0 chr4 93593983 93594017 -108734330 + MIR3 SINE MIR 160 193 -15 857 201 40 6 chr4 93594028 93594202 -108734145 - AluJb SINE Alu 0 312 133 208 304 0 0 chr4 93594597 93594653 -108733694 + L2 LINE L2 3258 3313 0 309 301 97 0 chr4 93595266 93595379 -108732968 + MIR SINE MIR 53 176 -86 432 99 14 0 chr4 93595405 93595476 -108732871 - L1MD3 LINE L1 -1 7994 7923 4962 145 24 18 chr4 93595639 93595842 -108732505 - L1MC1 LINE L1 0 6333 6133 1969 153 0 0 chr4 93595842 93596143 -108732204 - AluJo SINE Alu -11 301 1 4962 145 24 18 chr4 93596143 93596839 -108731508 - L1MC1 LINE L1 -200 6133 5426 373 260 75 81 chr4 93597059 93597202 -108731145 + MIR SINE MIR 1 144 -118 2470 62 0 7 chr4 93597202 93597506 -108730841 + AluY SINE Alu 1 302 -9 373 260 75 81 chr4 93597506 93597535 -108730812 + MIR SINE MIR 144 172 -90 5694 152 21 15 chr4 93598038 93599527 -108728820 - L1MA9 LINE L1 0 6312 4811 384 241 117 14 chr4 93599916 93600061 -108728286 - LTR33A LTR ERVL -101 422 263 510 231 19 106 chr4 93600068 93600268 -108728079 - LTR33A LTR ERVL -367 156 1 464 279 127 25 chr4 93600411 93600608 -108727739 - MIR SINE MIR -26 236 20 357 345 66 15 chr4 93600780 93600943 -108727404 + MER5A DNA MER1_type 7 188 -1 2255 92 0 0 chr4 93600985 93601293 -108727054 - AluSg SINE Alu 0 308 1 2023 115 58 144 chr4 93601453 93601870 -108726477 + Tigger2 DNA MER2_type 1 2665 -53 24815 96 10 3 chr4 93601875 93606329 -108722018 - L1PA8 LINE L1 -13 6159 1675 222 127 56 28 chr4 93606417 93606488 -108721859 + (TA)n Simple_repeat Simple_repeat 2 74 0 672 254 50 54 chr4 93606540 93606819 -108721528 - L2 LINE L2 0 3313 3036 22 0 0 0 chr4 93607130 93607152 -108721195 + AT_rich Low_complexity Low_complexity 1 22 0 2011 137 0 0 chr4 93607214 93607499 -108720848 + AluSx SINE Alu 1 285 -27 1501 157 39 25 chr4 93608110 93608390 -108719957 + AluJb SINE Alu 3 286 -26 23 0 0 0 chr4 93608391 93608414 -108719933 + AT_rich Low_complexity Low_complexity 1 23 0 2257 110 17 0 chr4 93608660 93608961 -108719386 - AluSq SINE Alu -7 306 1 1007 219 5 5 chr4 93610444 93610636 -108717711 + MIR SINE MIR 12 203 -59 249 333 12 0 chr4 93610706 93610787 -108717560 + CT-rich Low_complexity Low_complexity 1 82 0 251 250 50 75 chr4 93611242 93611362 -108716985 + MER31-int LTR ERV1 3929 4045 -891 288 254 0 0 chr4 93611421 93611476 -108716871 + MIR SINE MIR 196 250 -12 360 293 147 0 chr4 93612378 93612494 -108715853 - MIR SINE MIR -126 136 4 2249 123 123 5 chr4 93613147 93613530 -108714817 + MSTA LTR MaLR 1 428 0 1592 227 6 14 chr4 93613530 93613878 -108714469 + MLT1A1 LTR MaLR 10 354 -11 306 270 54 54 chr4 93613971 93614156 -108714191 - L1M4 LINE L1 -1534 4612 4428 27 49 0 0 chr4 93614243 93614284 -108714063 + AT_rich Low_complexity Low_complexity 1 41 0 7661 22 1 1 chr4 93614306 93615872 -108712475 - L1PA4 LINE L1 -7 6148 4583 1203 34 0 0 chr4 93615872 93616020 -108712327 + L1P LINE L1 4311 4458 -1688 236 296 12 0 chr4 93616602 93616683 -108711664 - L1M4 LINE L1 -2309 3837 3756 2616 107 8 5 chr4 93617111 93617485 -108710862 - THE1C LTR MaLR 0 375 1 24 32 0 0 chr4 93617937 93617968 -108710379 + AT_rich Low_complexity Low_complexity 1 31 0 2217 156 10 3 chr4 93618386 93618771 -108709576 + MLT1B LTR MaLR 3 390 0 391 288 36 6 chr4 93620431 93620631 -108707716 + L1ME LINE L1 5294 5493 -673 372 285 111 19 chr4 93621132 93621339 -108707008 + MLT1J1 LTR MaLR 5 230 -216 458 242 18 67 chr4 93621340 93621505 -108706842 + MLT1J2 LTR MaLR 259 415 -35 668 247 107 30 chr4 93622178 93622592 -108705755 + L2 LINE L2 2543 3084 -229 6744 74 12 3 chr4 93622717 93623620 -108704727 - L1PA8 LINE L1 -6 6166 5256 2743 171 26 0 chr4 93623650 93624142 -108704205 - L1MB2 LINE L1 -39 6132 5628 205 316 76 0 chr4 93624150 93624229 -108704118 + L2 LINE L2 3167 3251 -62 406 279 27 41 chr4 93624270 93624403 -108703944 + L2 LINE L2 3153 3285 -28 2280 142 72 36 chr4 93624403 93624819 -108703528 - MSTB1 LTR MaLR 0 432 2 406 279 27 41 chr4 93624819 93624832 -108703515 + L2 LINE L2 3285 3297 -16 1582 235 32 41 chr4 93625140 93625331 -108703016 - L1MC4 LINE L1 -120 7922 7731 1923 168 27 46 chr4 93625331 93625701 -108702646 - THE1B LTR MaLR 0 364 2 1582 235 32 41 chr4 93625701 93626045 -108702302 - L1MC4 LINE L1 -311 7731 7392 606 105 0 0 chr4 93627273 93627378 -108700969 + (TAGA)n Simple_repeat Simple_repeat 4 108 0 1804 132 111 18 chr4 93627378 93627720 -108700627 + THE1C LTR MaLR 2 375 0 868 211 35 0 chr4 93627745 93627916 -108700431 + MER45A DNA AcHobo 2 178 0 1369 249 23 80 chr4 93627921 93628319 -108700028 - LTR16A LTR ERVL 0 450 76 382 298 204 18 chr4 93628499 93628774 -108699573 + MLT1J2 LTR MaLR 1 326 -124 318 376 79 17 chr4 93628941 93629359 -108698988 + L2 LINE L2 1002 1445 -1869 507 311 142 61 chr4 93630216 93630904 -108697443 + L2 LINE L2 1564 2307 -1007 519 262 182 33 chr4 93631374 93631885 -108696462 + MLT1G1 LTR MaLR 2 595 0 272 366 49 7 chr4 93632449 93632591 -108695756 + L2 LINE L2 2293 2440 -874 395 262 7 71 chr4 93633069 93633210 -108695137 + MER5B DNA MER1_type 42 173 -5 380 318 38 114 chr4 93633214 93633503 -108694844 + L2 LINE L2 3006 3272 0 282 29 0 0 chr4 93633601 93633636 -108694711 + (T)n Simple_repeat Simple_repeat 1 35 0 2492 135 39 10 chr4 93633710 93634126 -108694221 + MSTA LTR MaLR 1 428 0 370 278 171 17 chr4 93634612 93634788 -108693559 - MIR SINE MIR -11 251 49 1939 157 41 26 chr4 93635082 93635282 -108693065 + MER7A DNA MER2_type 1 208 -2830 1826 147 51 42 chr4 93635282 93635616 -108692731 + MER1B DNA MER1_type 1 337 0 1939 157 41 26 chr4 93635616 93635758 -108692589 + MER7A DNA MER2_type 208 346 0 3116 141 28 21 chr4 93635783 93636315 -108692032 + MER34B LTR ERV1 1 536 -29 602 199 105 17 chr4 93636329 93636510 -108691837 - L1MD3 LINE L1 -45 7950 7754 943 180 60 120 chr4 93637342 93637659 -108690688 - L1MA9 LINE L1 -144 6190 5893 3510 193 49 30 chr4 93638088 93638601 -108689746 - L1MB7 LINE L1 0 6184 5645 2277 106 13 0 chr4 93638601 93638904 -108689443 + AluSx SINE Alu 1 307 -5 3510 193 49 30 chr4 93638904 93639264 -108689083 - L1MB7 LINE L1 -539 5645 5294 2073 119 20 0 chr4 93639300 93639593 -108688754 - AluSp SINE Alu -14 299 1 227 174 14 14 chr4 93639664 93639733 -108688614 - L1ME3A LINE L1 -207 5963 5895 206 269 0 90 chr4 93640325 93640392 -108687955 + MIR3 SINE MIR 13 73 -135 25 31 0 0 chr4 93640512 93640544 -108687803 + AT_rich Low_complexity Low_complexity 1 32 0 2694 116 95 0 chr4 93642121 93642554 -108685793 + MER101 LTR ERV1 1 474 0 23 33 0 0 chr4 93643189 93643219 -108685128 + AT_rich Low_complexity Low_complexity 1 30 0 763 244 63 18 chr4 93643628 93643849 -108684498 + MLT1G1 LTR MaLR 6 236 -359 22 0 0 0 chr4 93644969 93644991 -108683356 + AT_rich Low_complexity Low_complexity 1 22 0 643 116 27 18 chr4 93645753 93645865 -108682482 - L1MA9 LINE L1 0 6312 6200 22 35 0 0 chr4 93646208 93646237 -108682110 + AT_rich Low_complexity Low_complexity 1 29 0 281 304 149 60 chr4 93646851 93647019 -108681328 + MIR SINE MIR 15 197 -65 1624 91 94 85 chr4 93647019 93647356 -108680991 + THE1C LTR MaLR 1 340 -35 2067 103 8 14 chr4 93647356 93647871 -108680476 + THE1C-int LTR MaLR 80 630 -950 199 379 0 0 chr4 93647874 93647940 -108680407 + MIR SINE MIR 197 262 0 2578 95 14 22 chr4 93647988 93648355 -108679992 + THE1B LTR MaLR 1 364 0 957 321 60 18 chr4 93648747 93649245 -108679102 - LTR33 LTR ERVL -2 519 1 1641 204 156 51 chr4 93649443 93650008 -108678339 - MLT1E3 LTR MaLR 0 624 1 2226 112 27 27 chr4 93650595 93650970 -108677377 + THE1C LTR MaLR 1 375 0 2104 91 0 7 chr4 93651561 93651836 -108676511 + AluY SINE Alu 1 273 -38 257 0 30 0 chr4 93651844 93651877 -108676470 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 410 108 176 0 chr4 93652090 93652164 -108676183 + MSTB LTR MaLR 1 87 -339 181 231 0 26 chr4 93652203 93652242 -108676105 - MIR SINE MIR -141 67 30 1549 232 37 6 chr4 93652854 93653208 -108675139 + MLT1A1 LTR MaLR 1 365 0 185 65 32 0 chr4 93654084 93654115 -108674232 + (CA)n Simple_repeat Simple_repeat 2 33 0 2302 102 0 0 chr4 93655166 93655461 -108672886 - AluSx SINE Alu -17 295 1 21 0 0 0 chr4 93665878 93665899 -108662448 + AT_rich Low_complexity Low_complexity 1 21 0 340 338 59 56 chr4 93666061 93666384 -108661963 + L1MC4a LINE L1 4729 5052 -1094 303 299 75 43 chr4 93666576 93667204 -108661143 + L1MC4a LINE L1 5256 5460 -842 1899 176 0 0 chr4 93667475 93667770 -108660577 - AluJb SINE Alu -17 295 1 444 341 80 23 chr4 93667812 93667988 -108660359 + MIR3 SINE MIR 17 202 -6 213 39 0 0 chr4 93668507 93668533 -108659814 + (A)n Simple_repeat Simple_repeat 1 26 0 314 23 23 0 chr4 93669626 93669669 -108658678 + (TG)n Simple_repeat Simple_repeat 2 45 0 244 153 20 71 chr4 93669679 93669734 -108658613 + CT-rich Low_complexity Low_complexity 3 52 -43 4092 100 15 5 chr4 93669734 93670333 -108658014 - L1PA13 LINE L1 -3 6160 5556 244 153 20 71 chr4 93670333 93670375 -108657972 + CT-rich Low_complexity Low_complexity 52 95 0 309 269 101 0 chr4 93670434 93670553 -108657794 + MER102b DNA MER1_type 180 310 -31 895 236 62 16 chr4 93670638 93670880 -108657467 + MIR SINE MIR 2 254 -8 1625 172 97 40 chr4 93670917 93671318 -108657029 - MER31B LTR ERV1 0 466 43 290 213 33 0 chr4 93671533 93671594 -108656753 - MIR SINE MIR -112 150 88 24 67 0 0 chr4 93671704 93671749 -108656598 + AT_rich Low_complexity Low_complexity 1 45 0 575 292 168 0 chr4 93672967 93673176 -108655171 - MIR SINE MIR -4 258 15 824 234 140 89 chr4 93673532 93673739 -108654608 - MER34 LTR ERV1 -2 540 345 1963 131 32 0 chr4 93673739 93674022 -108654325 - AluSc SINE Alu -17 292 1 824 234 140 89 chr4 93674022 93674328 -108654019 - MER34 LTR ERV1 -197 345 1 234 280 127 34 chr4 93674377 93674495 -108653852 + MIR SINE MIR 134 262 0 1541 118 0 9 chr4 93675404 93675615 -108652732 - AluSx SINE Alu -103 209 1 758 180 72 90 chr4 93676662 93676884 -108651463 - MER20 DNA MER1_type -1 218 1 862 289 35 32 chr4 93677012 93677338 -108651009 + L1MC4a LINE L1 5513 5842 -1966 1596 160 6 50 chr4 93677338 93677656 -108650691 + AluSx SINE Alu 1 304 -8 862 289 35 32 chr4 93677656 93677702 -108650645 + L1MC4a LINE L1 5842 5886 -1922 237 216 86 17 chr4 93677856 93677972 -108650375 + L1MC4a LINE L1 6051 6174 -1634 2104 135 15 6 chr4 93678854 93679194 -108649153 + MER61A LTR ERV1 1 343 0 550 264 54 0 chr4 93679256 93679385 -108648962 - MIR SINE MIR -109 153 18 2456 139 46 5 chr4 93679589 93679999 -108648348 + MSTB1 LTR MaLR 3 429 -3 340 262 110 18 chr4 93680046 93680210 -108648137 - L2 LINE L2 -338 2976 2798 * 630 266 34 89 chr4 93680195 93680522 -108647825 + L2 LINE L2 3005 3313 0 273 146 0 0 chr4 93681223 93681271 -108647076 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 378 167 0 0 chr4 93681335 93681407 -108646940 - Charlie2a DNA MER1_type -1541 1321 1250 235 328 16 16 chr4 93681616 93681741 -108646606 + L1ME4a LINE L1 5589 5713 -408 358 188 53 75 chr4 93682464 93682597 -108645750 + L1ME4a LINE L1 5928 6057 -64 325 398 88 19 chr4 93683563 93683925 -108644422 - L2 LINE L2 -505 2809 2423 647 209 93 28 chr4 93684218 93684400 -108643947 - MER63A DNA MER1_type 0 210 17 190 195 24 0 chr4 93685314 93685355 -108642992 + L2 LINE L2 3230 3271 -1 249 57 0 0 chr4 93685833 93685868 -108642479 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 546 55 33 0 chr4 93686042 93686133 -108642214 + (TA)n Simple_repeat Simple_repeat 2 95 0 735 179 14 0 chr4 93686133 93686273 -108642074 - AluJb SINE Alu -89 223 82 632 287 24 29 chr4 93686614 93686823 -108641524 - MIR SINE MIR -14 248 41 1204 194 85 20 chr4 93686906 93687200 -108641147 + MER2 DNA MER2_type 33 345 0 1770 169 51 20 chr4 93687337 93687691 -108640656 + MLT1A1 LTR MaLR 1 365 0 326 211 139 86 chr4 93688185 93688394 -108639953 + MER112 DNA MER1_type 1 220 -40 2086 100 3 24 chr4 93688915 93689229 -108639118 + AluSg SINE Alu 1 308 0 270 367 62 48 chr4 93689444 93689654 -108638693 - L2 LINE L2 -38 3234 3022 543 259 7 7 chr4 93689879 93690022 -108638325 + Charlie1a DNA MER1_type 6 148 -1307 253 237 0 17 chr4 93690143 93690202 -108638145 + MIR3 SINE MIR 103 160 -48 262 231 92 0 chr4 93690203 93690268 -108638079 - MER5A DNA MER1_type -2 187 117 315 0 0 0 chr4 93690652 93690687 -108637660 + (TG)n Simple_repeat Simple_repeat 2 36 0 216 222 22 0 chr4 93691698 93691743 -108636604 - L2 LINE L2 -3 3310 3265 23 0 0 0 chr4 93691751 93691774 -108636573 + AT_rich Low_complexity Low_complexity 1 23 0 302 290 221 11 chr4 93693271 93693533 -108634814 + L2 LINE L2 1892 2208 -1106 256 85 0 186 chr4 93693541 93693600 -108634747 - MLT1H LTR MaLR 0 549 502 840 262 63 5 chr4 93694128 93694349 -108633998 - MIR SINE MIR 0 262 29 1216 327 124 36 chr4 93694967 93696108 -108632239 + L2 LINE L2 1730 2971 -343 1728 198 38 45 chr4 93696127 93696412 -108631935 + MLT1C LTR MaLR 22 304 -163 2596 124 11 49 chr4 93696412 93696656 -108631691 - MSTA LTR MaLR 0 428 207 2218 102 0 7 chr4 93696656 93696950 -108631397 - AluSg SINE Alu -18 292 1 2596 124 11 49 chr4 93696950 93697150 -108631197 - MSTA LTR MaLR -221 207 1 1728 198 38 45 chr4 93697150 93697309 -108631038 + MLT1C LTR MaLR 304 463 -4 1075 119 67 26 chr4 93698041 93698235 -108630112 - MER30 DNA MER1_type -28 202 1 234 211 184 0 chr4 93698779 93698855 -108629492 - L2 LINE L2 -37 3235 3146 193 255 43 0 chr4 93699049 93699096 -108629251 - L2 LINE L2 -92 3221 3173 546 299 36 12 chr4 93699874 93700041 -108628306 + MIR SINE MIR 9 179 -83 2767 122 141 72 chr4 93700203 93700722 -108627625 + LTR8A LTR ERV1 1 579 -148 1141 54 54 18 chr4 93700722 93700889 -108627458 + L1PA6 LINE L1 5980 6152 -2 2767 122 141 72 chr4 93700889 93701049 -108627298 + LTR8A LTR ERV1 579 727 0 240 200 0 0 chr4 93701594 93701644 -108626703 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 1020 184 0 0 chr4 93702371 93702539 -108625808 + FAM SINE Alu 1 168 -7 310 258 84 58 chr4 93702600 93702790 -108625557 - L2 LINE L2 -8 3305 3111 196 265 73 0 chr4 93704394 93704462 -108623885 - MIR SINE MIR -70 192 120 316 246 95 95 chr4 93705078 93705204 -108623143 - MIR SINE MIR -63 145 35 224 250 17 17 chr4 93705350 93705410 -108622937 + L2 LINE L2 2698 2757 -557 1309 146 134 8 chr4 93705528 93705796 -108622551 - AluJo SINE Alu 0 302 1 229 323 47 31 chr4 93705908 93706035 -108622312 - L2 LINE L2 0 3272 3144 2039 225 83 20 chr4 93706726 93707362 -108620985 - L1ME1 LINE L1 -18 6148 5473 192 293 20 88 chr4 93707487 93707634 -108620713 + L2 LINE L2 3159 3295 -18 212 306 174 7 chr4 93708114 93708258 -108620089 - L3 LINE CR1 -3 1574 1407 898 280 100 29 chr4 93708795 93709393 -108618954 + MLT2F LTR ERVL 1 648 -15 732 192 0 15 chr4 93709791 93709921 -108618426 + FLAM_C SINE Alu 1 128 -5 235 244 81 0 chr4 93711201 93711287 -108617060 - MIR3 SINE MIR -21 187 95 234 239 0 34 chr4 93711314 93711402 -108616945 + MER113 DNA MER1_type? 22 106 -415 21 36 0 0 chr4 93711548 93711576 -108616771 + AT_rich Low_complexity Low_complexity 1 28 0 228 143 0 0 chr4 93712174 93712216 -108616131 + (TG)n Simple_repeat Simple_repeat 1 42 0 397 240 168 8 chr4 93712549 93712674 -108615673 + MIR SINE MIR 2 146 -116 252 0 0 0 chr4 93712911 93712939 -108615408 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 249 108 0 0 chr4 93714178 93714215 -108614132 + (TA)n Simple_repeat Simple_repeat 1 37 0 181 302 16 0 chr4 93716093 93716156 -108612191 - MIR SINE MIR -81 127 64 336 230 40 60 chr4 93717924 93718024 -108610323 - MER5B DNA MER1_type 0 178 81 21 0 0 0 chr4 93718381 93718402 -108609945 + AT_rich Low_complexity Low_complexity 1 21 0 267 295 0 31 chr4 93719090 93719219 -108609128 + L1MA9 LINE L1 5933 6057 -255 218 149 40 14 chr4 93719258 93719332 -108609015 + (TA)n Simple_repeat Simple_repeat 1 76 0 242 135 0 39 chr4 93719347 93719399 -108608948 + L1MA9 LINE L1 6225 6274 -38 283 215 160 95 chr4 93719852 93720052 -108608295 + MER112 DNA MER1_type 1 213 -47 24 0 0 0 chr4 93720128 93720152 -108608195 + AT_rich Low_complexity Low_complexity 1 24 0 209 339 219 17 chr4 93720647 93721004 -108607343 + L2 LINE L2 2843 3271 -1 270 282 13 0 chr4 93722674 93722752 -108605595 + (TA)n Simple_repeat Simple_repeat 1 79 0 261 0 0 0 chr4 93722795 93722824 -108605523 + (CA)n Simple_repeat Simple_repeat 1 29 0 26 0 0 0 chr4 93723395 93723421 -108604926 + GC_rich Low_complexity Low_complexity 1 26 0 213 121 0 0 chr4 93723540 93723573 -108604774 + (CGG)n Simple_repeat Simple_repeat 2 34 0 371 294 106 19 chr4 93724139 93724299 -108604048 - MIR SINE MIR -38 224 51 421 191 151 132 chr4 93724324 93724412 -108603935 - MER5A DNA MER1_type -21 168 74 2100 71 58 0 chr4 93724412 93724707 -108603640 - AluSq SINE Alu -1 312 1 421 191 151 132 chr4 93724707 93724770 -108603577 - MER5A DNA MER1_type -115 74 14 3641 51 4 0 chr4 93724770 93725221 -108603126 + L1PA5 LINE L1 5702 6154 0 304 274 20 0 chr4 93725249 93725351 -108602996 + MER117 DNA MER1_type 1 104 -93 226 331 154 0 chr4 93725581 93725711 -108602636 - MIR SINE MIR -38 224 75 1765 191 144 27 chr4 93725783 93726233 -108602114 - MLT1D LTR MaLR 0 505 3 276 30 0 0 chr4 93727138 93727171 -108601176 + (CA)n Simple_repeat Simple_repeat 1 33 0 619 261 98 58 chr4 93727186 93727462 -108600885 + L2 LINE L2 3023 3309 -4 274 301 44 18 chr4 93727467 93727580 -108600767 - MIR SINE MIR -61 147 32 22 35 0 0 chr4 93728063 93728092 -108600255 + AT_rich Low_complexity Low_complexity 1 29 0 255 244 0 0 chr4 93728464 93728542 -108599805 + CT-rich Low_complexity Low_complexity 2 79 0 862 193 77 2 chr4 93728886 93729169 -108599178 - MLT2B1 LTR ERVL 0 520 166 232 172 16 16 chr4 93729185 93729249 -108599098 + (TA)n Simple_repeat Simple_repeat 1 64 0 28 48 0 0 chr4 93729267 93729309 -108599038 + AT_rich Low_complexity Low_complexity 1 42 0 3552 169 60 34 chr4 93729332 93730148 -108598199 + L1MB8 LINE L1 5341 6177 -1 249 329 0 27 chr4 93731814 93731887 -108596460 - L2 LINE L2 -12 3260 3190 1473 285 37 43 chr4 93732168 93732676 -108595671 - L2 LINE L2 -4 3309 2805 349 291 0 18 chr4 93732687 93732797 -108595550 + MLT1J1 LTR MaLR 23 130 -316 2298 94 7 0 chr4 93733609 93733906 -108594441 - AluSp SINE Alu -10 303 5 247 263 225 0 chr4 93733970 93734050 -108594297 - L2 LINE L2 -17 3296 3199 1714 216 107 26 chr4 93734106 93734573 -108593774 - MLT1D LTR MaLR 0 505 1 256 327 13 47 chr4 93734734 93734884 -108593463 + MIR SINE MIR 52 196 -66 27 49 0 0 chr4 93735794 93735835 -108592512 + AT_rich Low_complexity Low_complexity 1 41 0 392 185 64 16 chr4 93735944 93736102 -108592245 + MER58A DNA MER1_type 3 219 -5 414 0 0 0 chr4 93737510 93737556 -108590791 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 1924 155 0 38 chr4 93737634 93737951 -108590396 + AluJb SINE Alu 1 305 -7 327 288 188 0 chr4 93739122 93739282 -108589065 + MIR SINE MIR 73 262 0 444 276 83 45 chr4 93740057 93740213 -108588134 + MIR3 SINE MIR 34 195 -13 221 289 216 10 chr4 93740286 93740383 -108587964 + MIR SINE MIR 30 146 -62 234 0 0 0 chr4 93740601 93740627 -108587720 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 202 160 240 20 chr4 93741869 93741919 -108586428 - L2 LINE L2 -63 3250 3190 1511 48 5 0 chr4 93741984 93742172 -108586175 - L1PA8 LINE L1 0 6172 5984 1177 208 135 13 chr4 93743524 93743836 -108584511 - MLT1E2 LTR MaLR -2 624 275 729 284 126 66 chr4 93743883 93744383 -108583964 - MLT1K LTR MaLR -57 531 2 397 306 109 27 chr4 93744561 93744744 -108583603 + MIR SINE MIR 65 262 0 1511 152 130 99 chr4 93745423 93745909 -108582438 - MLT1D LTR MaLR -4 501 1 2041 177 32 3 chr4 93746290 93746669 -108581678 - MLT1B LTR MaLR 0 390 1 3284 231 118 20 chr4 93747362 93748369 -108579978 + MER69B DNA AcHobo 1 1125 -1401 1979 146 14 0 chr4 93748369 93748663 -108579684 + AluSx SINE Alu 1 298 -14 3284 231 118 20 chr4 93748663 93748751 -108579596 + MER69B DNA AcHobo 1125 1203 -23 565 290 167 0 chr4 93749675 93749861 -108578486 + MIR SINE MIR 2 218 -44 197 335 129 6 chr4 93750352 93750522 -108577825 - MIR SINE MIR -59 203 13 328 295 78 6 chr4 93751094 93751260 -108577087 - L1M4 LINE L1 -1337 4809 4632 799 117 22 28 chr4 93751360 93751540 -108576807 + CT-rich Low_complexity Low_complexity 1 179 0 486 128 0 23 chr4 93751541 93751627 -108576720 + (TCTCCC)n Simple_repeat Simple_repeat 5 88 0 183 222 0 0 chr4 93752132 93752177 -108576170 + (TG)n Simple_repeat Simple_repeat 2 46 0 228 67 0 0 chr4 93755435 93755465 -108572882 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 261 348 129 68 chr4 93755535 93756032 -108572315 - L3 LINE CR1 -1 1576 1050 288 319 164 0 chr4 93756167 93756283 -108572064 - L2 LINE L2 -1 3271 3137 1612 219 68 11 chr4 93756642 93757084 -108571263 - MLT1C LTR MaLR 0 467 1 22 0 0 0 chr4 93757267 93757289 -108571058 + AT_rich Low_complexity Low_complexity 1 22 0 2213 109 0 25 chr4 93757409 93757729 -108570618 - AluSx SINE Alu 0 312 1 1030 259 16 23 chr4 93757986 93758295 -108570052 + HsTC2 DNA Tc2 8 314 -1584 746 205 35 6 chr4 93758307 93758478 -108569869 + HsTC2 DNA Tc2 1720 1895 -3 498 283 75 56 chr4 93758618 93759245 -108569102 + L2 LINE L2 2517 3248 -65 841 272 79 29 chr4 93759731 93760047 -108568300 - MER102b DNA MER1_type -8 333 2 15065 132 21 2 chr4 93760333 93762705 -108565642 + Tigger1 DNA MER2_type 2 2418 0 474 255 62 38 chr4 93762717 93763007 -108565340 - L1ME4a LINE L1 -217 5904 5608 452 275 75 100 chr4 93763196 93763596 -108564751 - HAL1b LINE L1 -931 417 28 887 313 20 20 chr4 93763919 93764270 -108564077 - LTR16B LTR ERVL 0 464 114 361 312 157 34 chr4 93764795 93765160 -108563187 + L2 LINE L2 2708 3114 -199 432 261 15 103 chr4 93765406 93765601 -108562746 + L2 LINE L2 3136 3313 0 262 266 46 110 chr4 93767658 93767831 -108560516 + L1ME LINE L1 5497 5658 -463 2248 110 0 3 chr4 93768120 93768429 -108559918 + AluSg SINE Alu 1 308 -2 279 0 0 0 chr4 93768450 93768481 -108559866 + (TG)n Simple_repeat Simple_repeat 2 32 0 282 256 81 35 chr4 93768836 93768922 -108559425 - MIR SINE MIR -121 141 52 208 288 0 0 chr4 93769211 93769291 -108559056 + A-rich Low_complexity Low_complexity 2 81 0 6248 151 54 26 chr4 93769612 93770231 -108558116 + Tigger3b DNA MER2_type 15 615 -2413 2493 62 0 3 chr4 93770231 93770539 -108557808 - AluY SINE Alu -4 307 1 6248 151 54 26 chr4 93770539 93771103 -108557244 + Tigger3b DNA MER2_type 615 1231 0 450 315 212 5 chr4 93771773 93771976 -108556371 - MIR SINE MIR -10 252 8 13134 185 21 27 chr4 93773355 93773544 -108554803 + L1MA8 LINE L1 5 194 -6134 7424 41 0 0 chr4 93773544 93775193 -108553154 + L1PA5 LINE L1 4504 6152 -2 13134 185 21 27 chr4 93775193 93776985 -108551362 + L1MA8 LINE L1 194 1996 -4332 2742 10 0 19 chr4 93776985 93777297 -108551050 + AluYa5 SINE Alu 1 306 -5 13134 185 21 27 chr4 93777297 93777326 -108551021 + L1MA8 LINE L1 1996 2024 -4304 1639 195 0 10 chr4 93777326 93777618 -108550729 + AluJo SINE Alu 3 291 -21 13134 185 21 27 chr4 93777618 93777733 -108550614 + L1MA8 LINE L1 2024 2138 -4190 2770 154 12 2 chr4 93777733 93778155 -108550192 - MSTB LTR MaLR 0 426 1 13134 185 21 27 chr4 93778155 93781083 -108547264 + L1MA8 LINE L1 2138 5020 -1308 538 179 8 30 chr4 93781066 93781200 -108547147 + L1MA8 LINE L1 5357 5487 -841 * 244 130 0 19 chr4 93781206 93781260 -108547087 + L1MA4 LINE L1 6246 6298 -2 2257 134 23 10 chr4 93781277 93781673 -108546674 + L1MA8 LINE L1 6073 6473 0 1726 167 4 14 chr4 93781696 93781977 -108546370 + AluSx SINE Alu 13 290 -22 256 105 0 0 chr4 93782738 93782776 -108545571 - AluJo SINE Alu -6 296 259 1256 171 37 9 chr4 93782776 93782992 -108545355 - AluJo SINE Alu -90 222 1 420 211 64 18 chr4 93783194 93783303 -108545044 + L2 LINE L2 3198 3311 -2 370 340 56 88 chr4 93783619 93784251 -108544096 - L2 LINE L2 -7 3306 2676 506 293 18 36 chr4 93784378 93784545 -108543802 - MER5A DNA MER1_type -15 174 11 213 94 0 0 chr4 93784722 93784754 -108543593 + (GAAA)n Simple_repeat Simple_repeat 3 34 0 348 252 141 22 chr4 93785385 93785520 -108542827 - L1M4 LINE L1 -1114 5032 4882 193 167 37 0 chr4 93785527 93785581 -108542766 + (CAT)n Simple_repeat Simple_repeat 2 57 0 307 312 140 16 chr4 93785952 93786138 -108542209 + L3 LINE CR1 273 481 -1096 298 82 55 14 chr4 93787031 93787104 -108541243 + (TTTA)n Simple_repeat Simple_repeat 2 77 0 681 199 107 0 chr4 93788106 93788322 -108540025 + Charlie5 DNA MER1_type 2325 2563 -49 3122 212 11 17 chr4 93788467 93789114 -108539233 - MER82 DNA MER2_type 0 653 11 1923 154 0 13 chr4 93789192 93789504 -108538843 + AluJb SINE Alu 1 308 -4 290 299 94 0 chr4 93789945 93790072 -108538275 - L2 LINE L2 -552 2762 2624 366 203 63 0 chr4 93790075 93790154 -108538193 + MIR SINE MIR 179 262 0 1880 247 52 21 chr4 93790908 93791427 -108536920 - MER87 LTR ERV1 -6 535 1 1985 166 29 4 chr4 93791683 93792214 -108536133 + LTR49 LTR ERV1 1 595 0 25 31 0 0 chr4 93792533 93792565 -108535782 + AT_rich Low_complexity Low_complexity 1 32 0 8072 133 12 1 chr4 93792581 93793865 -108534482 + HSMAR2 DNA Mariner 3 1300 -2 386 287 16 25 chr4 93794104 93794226 -108534121 + MIR SINE MIR 30 150 -58 854 293 72 46 chr4 93794977 93795424 -108532923 + L2 LINE L2 2447 2910 -404 2662 107 3 3 chr4 93795424 93795788 -108532559 - THE1B LTR MaLR 0 364 1 854 293 72 46 chr4 93795788 93795841 -108532506 + L2 LINE L2 2910 2960 -354 1122 80 23 6 chr4 93795870 93796045 -108532302 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 272 26 0 26 chr4 93796045 93796083 -108532264 + (TTCC)n Simple_repeat Simple_repeat 2 38 0 381 184 28 9 chr4 93796137 93796246 -108532101 + CT-rich Low_complexity Low_complexity 5 115 0 278 238 24 36 chr4 93796253 93796337 -108532010 + MER112 DNA MER1_type 169 251 -9 1961 187 82 16 chr4 93797658 93798096 -108530251 - MLT1C LTR MaLR 0 467 1 2043 125 0 7 chr4 93798098 93798385 -108529962 - AluSx SINE Alu -16 296 12 860 237 8 70 chr4 93799527 93799784 -108528563 + MIR SINE MIR 3 243 -19 809 292 74 36 chr4 93799940 93800468 -108527879 + MLT1H LTR MaLR 1 548 -1 206 351 24 55 chr4 93800501 93800666 -108527681 - L2 LINE L2 -180 3092 2933 280 160 40 0 chr4 93800898 93800948 -108527399 - L2 LINE L2 -8 3305 3254 1515 208 81 43 chr4 93800949 93801391 -108526956 + MLT1C LTR MaLR 8 466 -1 212 235 24 118 chr4 93801398 93801483 -108526864 - L2 LINE L2 -52 3261 3185 455 295 89 31 chr4 93801616 93801840 -108526507 + MIR SINE MIR 23 259 -3 22 0 0 0 chr4 93803560 93803582 -108524765 + AT_rich Low_complexity Low_complexity 1 22 0 728 250 90 11 chr4 93804314 93804502 -108523845 + MIR SINE MIR 39 241 -21 35557 44 2 1 chr4 93805173 93810369 -108517978 + L1PA5 LINE L1 947 6146 -8 3857 260 64 14 chr4 93810657 93811942 -108516405 - L1MEc LINE L1 -5001 1395 47 3027 300 147 37 chr4 93812282 93814467 -108513880 - L2 LINE L2 -13 3300 874 204 135 0 0 chr4 93815418 93815455 -108512892 + (CA)n Simple_repeat Simple_repeat 2 38 0 224 39 0 0 chr4 93816409 93816435 -108511912 + (TA)n Simple_repeat Simple_repeat 2 27 0 1351 109 43 24 chr4 93816435 93816645 -108511702 - AluJb SINE Alu -3 309 96 1179 168 109 43 chr4 93816908 93817212 -108511135 + MER33 DNA MER1_type 1 324 0 1295 210 66 0 chr4 93818916 93819173 -108509174 + MLT1A1 LTR MaLR 92 365 0 487 259 143 70 chr4 93819546 93819847 -108508500 + MER102b DNA MER1_type 3 325 -16 271 259 0 0 chr4 93820467 93820521 -108507826 - L2 LINE L2 -36 3236 3183 555 197 7 35 chr4 93820985 93821127 -108507220 + MER69 DNA AcHobo 2385 2522 -4 2062 267 108 69 chr4 93822014 93822047 -108506300 + L2 LINE L2 2008 2038 -1275 1467 230 16 30 chr4 93822047 93822417 -108505930 + MLT1A1 LTR MaLR 1 365 0 2062 267 108 69 chr4 93822417 93822598 -108505749 + L2 LINE L2 2038 2210 -1103 2116 217 67 46 chr4 93822598 93823211 -108505136 + MLT1E2 LTR MaLR 1 626 0 2062 267 108 69 chr4 93823211 93823291 -108505056 + L2 LINE L2 2210 2285 -1028 770 172 0 8 chr4 93823291 93823419 -108504928 + FLAM_C SINE Alu 1 127 -6 2062 267 108 69 chr4 93823419 93824388 -108503959 + L2 LINE L2 2285 3309 -4 357 344 72 10 chr4 93824935 93825130 -108503217 + MIR SINE MIR 22 228 -34 234 308 29 39 chr4 93827122 93827226 -108501121 + MER5A DNA MER1_type 4 106 -83 223 211 18 18 chr4 93827248 93827305 -108501042 - MIR SINE MIR -12 250 194 198 288 34 17 chr4 93827468 93827527 -108500820 + MER5A DNA MER1_type 128 187 -2 272 358 0 0 chr4 93827539 93827620 -108500727 + L2 LINE L2 3201 3281 -32 24 0 0 0 chr4 93827622 93827646 -108500701 + AT_rich Low_complexity Low_complexity 1 24 0 207 196 36 18 chr4 93828442 93828498 -108499849 - MIR SINE MIR -12 250 194 279 278 118 41 chr4 93828556 93828725 -108499622 - MIR SINE MIR -40 222 41 300 382 27 5 chr4 93830277 93830463 -108497884 - L2 LINE L2 -505 2809 2620 26 50 0 0 chr4 93831088 93831128 -108497219 + AT_rich Low_complexity Low_complexity 1 40 0 224 316 13 13 chr4 93831358 93831437 -108496910 - MER5B DNA MER1_type -93 85 7 481 287 75 6 chr4 93832530 93832704 -108495643 + MLT1G1 LTR MaLR 1 186 -409 1218 279 138 21 chr4 93832713 93833147 -108495200 + MLT1G1 LTR MaLR 110 594 -1 2053 161 28 3 chr4 93833633 93833987 -108494360 - MLT1A1 LTR MaLR -2 363 1 228 67 0 0 chr4 93834557 93834587 -108493760 + (CA)n Simple_repeat Simple_repeat 2 31 0 310 246 12 144 chr4 93836177 93836344 -108492003 + MIR SINE MIR 118 262 0 289 81 0 0 chr4 93836486 93836564 -108491783 + Alu SINE Alu 251 328 0 1597 165 95 7 chr4 93836829 93837102 -108491245 + AluJo SINE Alu 1 297 -15 848 167 33 22 chr4 93837246 93837426 -108490921 - MER53 DNA DNA 0 189 8 21 0 0 0 chr4 93838728 93838749 -108489598 + AT_rich Low_complexity Low_complexity 1 21 0 730 254 76 0 chr4 93838875 93839060 -108489287 + MER58A DNA MER1_type 2 200 -24 313 333 85 20 chr4 93839688 93839889 -108488458 + L2 LINE L2 3092 3305 -8 237 355 122 0 chr4 93840332 93840439 -108487908 - L2 LINE L2 -37 3235 3116 1004 263 27 20 chr4 93840995 93841288 -108487059 - LTR16A1 LTR ERVL 0 457 163 2163 168 68 3 chr4 93841625 93842006 -108486341 - MSTB LTR MaLR -20 406 1 1925 162 7 0 chr4 93843564 93843866 -108484481 + AluJb SINE Alu 1 304 -8 1259 270 149 58 chr4 93844618 93845392 -108482955 + L2 LINE L2 2479 3313 0 1819 154 6 22 chr4 93845394 93845705 -108482642 + AluJo SINE Alu 1 306 -6 317 263 92 13 chr4 93846639 93846715 -108481632 - L2 LINE L2 -50 3222 3141 2136 113 0 0 chr4 93846770 93847045 -108481302 + AluSx SINE Alu 3 277 -35 21 0 0 0 chr4 93847048 93847069 -108481278 + AT_rich Low_complexity Low_complexity 1 21 0 400 281 18 67 chr4 93847343 93847507 -108480840 + L1MEd LINE L1 948 1103 -5016 416 289 110 38 chr4 93847558 93847931 -108480416 + HAL1 LINE L1 1299 1698 -809 2003 118 45 30 chr4 93847937 93848269 -108480078 + MER1B DNA MER1_type 1 337 0 291 314 179 9 chr4 93848284 93848714 -108479633 - L2 LINE L2 -349 2965 2463 1562 176 164 6 chr4 93849037 93849378 -108478969 + MSTD LTR MaLR 2 396 0 246 214 18 0 chr4 93849420 93849476 -108478871 + L2 LINE L2 3216 3272 0 28 29 0 0 chr4 93850777 93850812 -108477535 + AT_rich Low_complexity Low_complexity 1 35 0 212 231 46 31 chr4 93851572 93851637 -108476710 + CT-rich Low_complexity Low_complexity 3 68 0 261 292 0 0 chr4 93851844 93851909 -108476438 - L2 LINE L2 -85 3228 3164 270 0 0 0 chr4 93851918 93851948 -108476399 + (TA)n Simple_repeat Simple_repeat 2 31 0 2146 91 25 0 chr4 93851948 93852223 -108476124 - AluY SINE Alu -29 282 1 319 145 304 0 chr4 93852343 93852412 -108475935 + MER20B DNA MER1_type 1 90 -129 2384 90 0 0 chr4 93852445 93852744 -108475603 - AluSx SINE Alu -11 301 3 33 56 0 0 chr4 93852822 93852876 -108475471 + AT_rich Low_complexity Low_complexity 1 54 0 198 0 0 0 chr4 93853996 93854018 -108474329 + (TG)n Simple_repeat Simple_repeat 1 22 0 330 247 74 159 chr4 93854374 93854657 -108473690 + MIR SINE MIR 4 262 0 252 241 0 0 chr4 93854662 93854716 -108473631 + (TAG)n Simple_repeat Simple_repeat 1 54 0 263 80 0 40 chr4 93856004 93856054 -108472293 - HSMAR2 DNA Mariner -1 1301 1254 7369 133 32 29 chr4 93856092 93856192 -108472155 - HSMAR2 DNA Mariner -37 1265 1167 2869 7 0 0 chr4 93856192 93856502 -108471845 - AluYa5 SINE Alu -1 310 1 7369 133 32 29 chr4 93856502 93856611 -108471736 - HSMAR2 DNA Mariner -135 1167 1060 1944 150 10 7 chr4 93856611 93856904 -108471443 - AluJb SINE Alu -18 294 1 7369 133 32 29 chr4 93856904 93857953 -108470394 - HSMAR2 DNA Mariner -242 1060 1 1477 203 182 12 chr4 93857953 93858347 -108470000 + MLT1D LTR MaLR 39 503 -2 268 292 32 81 chr4 93858366 93858551 -108469796 - MLT1K LTR MaLR -24 564 389 350 259 213 35 chr4 93859039 93859387 -108468960 + MER110A LTR ERV1 43 452 -16 2157 133 128 8 chr4 93859513 93859895 -108468452 - MSTA LTR MaLR 0 428 1 8611 173 69 2 chr4 93859900 93861441 -108466906 - MSTA-int LTR MaLR -6 1645 1 2173 143 102 15 chr4 93861443 93861835 -108466512 - MSTA LTR MaLR -2 426 1 768 202 65 0 chr4 93862345 93862513 -108465834 + MER5A DNA MER1_type 4 182 -7 23 33 0 0 chr4 93863771 93863801 -108464546 + AT_rich Low_complexity Low_complexity 1 30 0 208 344 0 0 chr4 93864111 93864172 -108464175 + GA-rich Low_complexity Low_complexity 2 62 0 186 224 140 65 chr4 93865817 93865924 -108462423 + L2 LINE L2 2950 3064 -208 696 272 51 34 chr4 93866005 93866313 -108462034 - L2 LINE L2 -231 3082 2751 2175 265 78 89 chr4 93866313 93867374 -108460973 - L2 LINE L2 -434 2880 1830 1952 137 46 34 chr4 93867374 93867762 -108460585 + L1MC2 LINE L1 5943 6335 -9 2175 265 78 89 chr4 93867762 93867806 -108460541 - L2 LINE L2 -1484 1830 1787 816 226 262 14 chr4 93867808 93868167 -108460180 + LTR50 LTR ERVL 2 449 -346 317 309 36 9 chr4 93868306 93868416 -108459931 + L2 LINE L2 3137 3249 -23 1452 218 37 78 chr4 93868460 93868946 -108459401 - MLT1C LTR MaLR -1 466 1 204 40 0 0 chr4 93869449 93869474 -108458873 + (CA)n Simple_repeat Simple_repeat 2 26 0 46 33 0 0 chr4 93870007 93870067 -108458280 + AT_rich Low_complexity Low_complexity 1 60 0 2194 100 6 31 chr4 93870730 93871051 -108457296 + AluSq SINE Alu 1 313 0 366 308 76 19 chr4 93871497 93871915 -108456432 + L1MCc LINE L1 1288 2191 -4671 670 190 61 49 chr4 93872388 93872551 -108455796 - MER21B LTR ERV1 -52 811 647 951 267 43 9 chr4 93872553 93872785 -108455562 - MER21B LTR ERV1 -537 326 87 403 222 0 0 chr4 93872834 93872906 -108455441 - MER21B LTR ERV1 -773 90 19 365 186 17 32 chr4 93872898 93872988 -108455359 - MER21B LTR ERV1 -795 68 1 * 797 331 25 25 chr4 93873063 93873429 -108454918 + MLT1K LTR MaLR 217 582 -6 1649 208 82 0 chr4 93874443 93874761 -108453586 + MER44D DNA MER2_type 1 344 -361 907 152 0 13 chr4 93874756 93874907 -108453440 + MER44D DNA MER2_type 457 605 0 * 547 240 66 83 chr4 93875023 93875265 -108453082 - MLT1J LTR MaLR -35 476 239 227 313 69 38 chr4 93875803 93875934 -108452413 - L2 LINE L2 -1 3312 3178 764 186 0 8 chr4 93875959 93876088 -108452259 + FLAM_A SINE Alu 1 128 -5 221 318 15 0 chr4 93876318 93876384 -108451963 + CT-rich Low_complexity Low_complexity 2 68 0 2321 98 0 0 chr4 93876626 93876922 -108451425 - AluSq SINE Alu -14 299 4 207 167 0 0 chr4 93877574 93877610 -108450737 + (TG)n Simple_repeat Simple_repeat 1 36 0 996 170 0 0 chr4 93878165 93878318 -108450029 + AluJb SINE Alu 137 289 -23 184 369 36 9 chr4 93878348 93878459 -108449888 - MIR SINE MIR -1 261 148 5925 114 9 14 chr4 93878683 93879868 -108448479 - L1PA14 LINE L1 -9 6152 4963 4265 180 12 23 chr4 93879871 93880201 -108448146 - L1MB1 LINE L1 -22 6146 5814 1864 211 6 6 chr4 93880201 93880566 -108447781 - MLT1A1 LTR MaLR 0 365 1 4265 180 12 23 chr4 93880566 93881214 -108447133 - L1MB1 LINE L1 -354 5814 5180 2279 109 0 3 chr4 93881364 93881666 -108446681 + AluSg SINE Alu 1 301 -9 3461 169 7 75 chr4 93882990 93883463 -108444884 - MER67C LTR ERV1 0 710 206 2496 114 16 5 chr4 93883463 93883832 -108444515 - THE1C LTR MaLR 0 375 3 3461 169 7 75 chr4 93883832 93883870 -108444477 - MER67C LTR ERV1 -504 206 167 1988 103 32 11 chr4 93883870 93884151 -108444196 - AluSx SINE Alu -21 291 5 3461 169 7 75 chr4 93884151 93884400 -108443947 - MER67C LTR ERV1 -543 167 1 2841 233 58 14 chr4 93886396 93887422 -108440925 + L1MA9 LINE L1 3185 4264 -3301 347 215 31 0 chr4 93887431 93887496 -108440851 - MER44D DNA MER2_type 0 605 539 610 278 9 0 chr4 93887502 93887718 -108440629 - L1M1 LINE L1 -5037 2528 2311 1037 132 94 19 chr4 93887718 93887931 -108440416 - MER44D DNA MER2_type -73 536 38 11725 157 34 57 chr4 93887951 93888611 -108439736 + L1MA9 LINE L1 4271 4944 -2787 454 76 15 0 chr4 93888611 93888677 -108439670 - MER41A LTR ERV1 -88 466 400 11725 157 34 57 chr4 93888677 93890480 -108437867 + L1MA9 LINE L1 4944 6786 -945 2027 91 0 0 chr4 93890480 93890732 -108437615 + AluSg SINE Alu 1 252 -58 11725 157 34 57 chr4 93890732 93891689 -108436658 + L1MA9 LINE L1 6786 7693 -38 2073 134 0 0 chr4 93891689 93891979 -108436368 - AluSx SINE Alu -10 302 13 11725 157 34 57 chr4 93891979 93892012 -108436335 + L1MA9 LINE L1 7693 7725 -6 23 33 0 0 chr4 93892613 93892643 -108435704 + AT_rich Low_complexity Low_complexity 1 30 0 36 23 0 0 chr4 93892739 93892782 -108435565 + AT_rich Low_complexity Low_complexity 1 43 0 942 268 98 34 chr4 93894163 93894541 -108433806 - LTR16A LTR ERVL -4 452 52 466 118 0 0 chr4 93894964 93895032 -108433315 + AluJb SINE Alu 64 131 -181 4967 153 40 10 chr4 93895134 93896159 -108432188 - L1PA16 LINE L1 -23 6143 5085 872 152 0 0 chr4 93896212 93896337 -108432010 - AluJb SINE Alu -187 125 1 4755 227 26 20 chr4 93896337 93897937 -108430410 - L1PA13 LINE L1 -3929 2868 1238 400 320 16 16 chr4 93898113 93898241 -108430106 - MIR SINE MIR -112 150 23 943 196 45 6 chr4 93898317 93898496 -108429851 + MLT1B LTR MaLR 192 377 -13 323 308 120 67 chr4 93899240 93899539 -108428808 + MLT1J LTR MaLR 217 531 -84 22 0 0 0 chr4 93902891 93902913 -108425434 + AT_rich Low_complexity Low_complexity 1 22 0 6326 230 132 24 chr4 93903079 93905676 -108422671 + L1M3e LINE L1 6 2560 -4546 1369 287 74 69 chr4 93905821 93906553 -108421794 + L2 LINE L2 2340 3078 -235 1585 170 15 19 chr4 93906553 93906823 -108421524 - AluJo SINE Alu -30 282 14 1369 287 74 69 chr4 93906823 93907059 -108421288 + L2 LINE L2 3078 3311 -2 566 255 26 1 chr4 93907380 93907510 -108420837 - MLT1J2 LTR MaLR -291 159 43 406 280 45 38 chr4 93907539 93907696 -108420651 - MIR SINE MIR -58 204 47 311 301 196 6 chr4 93909021 93909184 -108419163 + MIR SINE MIR 69 262 0 1801 231 57 2 chr4 93909338 93909793 -108418554 - L1ME1 LINE L1 -5 6161 5682 891 170 6 60 chr4 93909796 93909978 -108418369 - FRAM SINE Alu -5 171 1 4204 222 30 23 chr4 93909979 93911401 -108416946 - L1ME1 LINE L1 -470 5696 4261 1552 89 31 0 chr4 93911403 93911627 -108416720 - L1PA7 LINE L1 0 6154 5924 7969 94 7 18 chr4 93911628 93913202 -108415145 - L1P3 LINE L1 -4216 2245 684 2073 311 73 37 chr4 93913251 93914248 -108414099 - HERV16 LTR ERVL -2237 2759 1727 241 292 45 0 chr4 93914316 93914405 -108413942 - L1MC4 LINE L1 -26 8016 7924 366 413 108 9 chr4 93915917 93916452 -108411895 - L2 LINE L2 -422 2892 2305 1785 162 27 21 chr4 93916487 93916821 -108411526 + Tigger2a DNA MER2_type 1 336 -98 229 247 26 52 chr4 93916834 93916911 -108411436 - L2 LINE L2 -75 3238 3164 890 239 91 13 chr4 93918725 93918955 -108409392 + MIR SINE MIR 15 262 0 1533 153 227 11 chr4 93919755 93920107 -108408240 + MSTA LTR MaLR 1 428 0 4143 199 49 6 chr4 93920107 93920929 -108407418 + MSTA-int LTR MaLR 1 857 -794 2860 148 16 2 chr4 93920937 93921390 -108406957 + MSTA-int LTR MaLR 1193 1651 0 1846 111 226 11 chr4 93921393 93921743 -108406604 + MSTA LTR MaLR 4 428 0 1589 46 0 0 chr4 93922455 93922652 -108405695 - L1PA4 LINE L1 0 6155 5959 2123 112 3 3 chr4 93923997 93924292 -108404055 + AluSc SINE Alu 1 295 -14 2067 203 40 21 chr4 93924303 93924826 -108403521 - L1MC3 LINE L1 -7 7778 7246 3503 179 62 128 chr4 93924928 93925470 -108402877 - L1MC3 LINE L1 -55 7730 7154 2441 74 0 13 chr4 93925470 93925779 -108402568 - AluY SINE Alu -4 307 3 3503 179 62 128 chr4 93925779 93925799 -108402548 - L1MC3 LINE L1 -631 7154 7134 250 225 14 28 chr4 93925799 93925870 -108402477 - MLT1H LTR MaLR -401 148 79 3503 179 62 128 chr4 93925870 93925946 -108402401 - L1MC3 LINE L1 -651 7134 7055 2143 118 3 10 chr4 93925946 93926252 -108402095 - AluSx SINE Alu -8 304 1 3503 179 62 128 chr4 93926252 93926369 -108401978 - L1MC3 LINE L1 -730 7055 6932 1698 198 0 10 chr4 93926369 93926667 -108401680 + AluJo SINE Alu 1 295 -17 3503 179 62 128 chr4 93926667 93927103 -108401244 - L1MC3 LINE L1 -853 6932 6549 1882 159 83 29 chr4 93927103 93927629 -108400718 + MLT2A2 LTR ERVL 1 554 0 1029 200 49 0 chr4 93927629 93927854 -108400493 - L1MC3 LINE L1 -1232 6553 6318 1594 199 44 3 chr4 93927863 93928180 -108400167 + MLT1B-int LTR MaLR 412 741 -630 366 222 0 0 chr4 93928298 93928370 -108399977 + MLT1B-int LTR MaLR 686 757 -978 1895 218 47 30 chr4 93928434 93928906 -108399441 + MLT1B-int LTR MaLR 1256 1735 0 1306 192 29 107 chr4 93928908 93929329 -108399018 + MLT1B LTR MaLR 3 390 0 416 344 69 0 chr4 93930072 93930232 -108398115 - LTR33 LTR ERVL -340 181 11 226 284 90 30 chr4 93930929 93931063 -108397284 + L1P LINE L1 4064 4205 -1941 199 348 11 12 chr4 93931070 93931179 -108397168 - MIR SINE MIR -67 141 46 188 307 20 40 chr4 93931288 93931389 -108396958 - L2 LINE L2 -5 3267 3169 1663 249 95 30 chr4 93932877 93933551 -108394796 + MER20B DNA MER1_type 35 752 -31 740 301 20 0 chr4 93934482 93934678 -108393669 + MER63A DNA MER1_type 2 201 -9 297 279 131 8 chr4 93934839 93934961 -108393386 - MIR SINE MIR -13 249 113 1205 239 66 19 chr4 93935327 93935759 -108392588 + LTR68 LTR ERV1 107 608 -132 5961 229 33 34 chr4 93936881 93937118 -108391229 - L1M4 LINE L1 -2155 3991 3755 2482 125 59 7 chr4 93937118 93937525 -108390822 - MSTA LTR MaLR 0 428 1 5961 229 33 34 chr4 93937525 93939156 -108389191 - L1M4 LINE L1 -2391 3755 2125 323 296 25 0 chr4 93939942 93940023 -108388324 + L2 LINE L2 3227 3309 -4 298 285 106 49 chr4 93940199 93940322 -108388025 + MIR SINE MIR 25 154 -108 203 105 53 0 chr4 93940889 93940927 -108387420 + (TG)n Simple_repeat Simple_repeat 1 40 0 205 359 66 38 chr4 93941629 93941735 -108386612 - MIR SINE MIR -75 133 25 407 299 33 49 chr4 93941896 93942080 -108386267 - MIR SINE MIR -50 212 32 2031 235 106 4 chr4 93942648 93943164 -108385183 - MLT1F1 LTR MaLR 0 590 1 236 353 69 40 chr4 93943201 93943374 -108384973 - MIR3 SINE MIR -21 187 10 23 33 0 0 chr4 93943374 93943404 -108384943 + AT_rich Low_complexity Low_complexity 1 30 0 2220 124 0 0 chr4 93945484 93945782 -108382565 + AluSx SINE Alu 3 300 -12 184 197 15 15 chr4 93945939 93946005 -108382342 + GA-rich Low_complexity Low_complexity 2 67 0 317 232 0 0 chr4 93946987 93947043 -108381304 - MER2 DNA MER2_type 0 345 290 1283 144 35 0 chr4 93947075 93947277 -108381070 - MER2 DNA MER2_type -136 209 1 392 331 76 22 chr4 93947298 93947715 -108380632 - L1MD2 LINE L1 -489 5870 5408 384 199 9 148 chr4 93948977 93949193 -108379154 + L1M4 LINE L1 877 1062 -5480 240 268 14 0 chr4 93949308 93949379 -108378968 + MIR SINE MIR 63 134 -128 1191 254 52 45 chr4 93949387 93949769 -108378578 + MLT1F1 LTR MaLR 177 561 -6 186 333 35 0 chr4 93950879 93950936 -108377411 - L2 LINE L2 -40 3232 3174 690 278 112 105 chr4 93951146 93951605 -108376742 + L2 LINE L2 141 595 -2719 2370 113 0 0 chr4 93951605 93951916 -108376431 - AluSx SINE Alu -1 311 1 690 278 112 105 chr4 93951916 93952112 -108376235 + L2 LINE L2 595 804 -2510 768 209 26 103 chr4 93952117 93952351 -108375996 + MER58A DNA MER1_type 9 224 0 690 278 112 105 chr4 93952351 93952398 -108375949 + L2 LINE L2 804 849 -2465 492 48 0 0 chr4 93952410 93952473 -108375874 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 347 291 13 7 chr4 93954279 93954425 -108373922 + (TA)n Simple_repeat Simple_repeat 2 149 0 9050 97 4 1 chr4 93954425 93954683 -108373664 - L1PA8 LINE L1 -15 6157 5901 2541 58 0 3 chr4 93954683 93954992 -108373355 - AluY SINE Alu -3 308 1 9050 97 4 1 chr4 93954992 93955090 -108373257 - L1PA8 LINE L1 -271 5901 5805 2078 139 0 3 chr4 93955090 93955393 -108372954 - AluSg SINE Alu -8 302 1 9050 97 4 1 chr4 93955393 93957120 -108371227 - L1PA8 LINE L1 -367 5805 4099 25 51 0 0 chr4 93957571 93957610 -108370737 + AT_rich Low_complexity Low_complexity 1 39 0 2034 114 0 0 chr4 93958073 93958345 -108370002 + AluSx SINE Alu 1 272 -40 265 226 49 0 chr4 93959110 93959190 -108369157 + MIR SINE MIR 76 164 -75 289 295 13 0 chr4 93960429 93960507 -108367840 + L2 LINE L2 3185 3263 -9 214 402 18 9 chr4 93960511 93960623 -108367724 - MIR SINE MIR -76 132 20 320 284 88 34 chr4 93961195 93961399 -108366948 + L2 LINE L2 2962 3176 -137 279 298 66 16 chr4 93961599 93961720 -108366627 - MIR SINE MIR 0 262 136 409 285 15 66 chr4 93963310 93963494 -108364853 - MIR SINE MIR -15 247 69 2195 193 172 114 chr4 93964767 93965143 -108363204 + L1MC3 LINE L1 6707 7060 -725 247 293 0 38 chr4 93965143 93965249 -108363098 + MLT1F1 LTR MaLR 46 147 -420 2195 193 172 114 chr4 93965249 93965786 -108362561 + L1MC3 LINE L1 7060 7784 -1 440 234 30 21 chr4 93966898 93967039 -108361308 - L1ME1 LINE L1 -32 6134 5996 1017 277 39 24 chr4 93967042 93967374 -108360973 - LTR16B LTR ERVL -2 462 126 1610 214 59 15 chr4 93967374 93967781 -108360566 - L1ME1 LINE L1 -368 5798 5374 226 233 25 141 chr4 93967788 93967951 -108360396 - MLT1-int LTR MaLR -55 1316 1173 * 343 111 32 0 chr4 93967943 93968006 -108360341 - L1M4 LINE L1 -893 5253 5189 238 261 57 45 chr4 93969482 93969570 -108358777 - MLT1J LTR MaLR -205 306 218 4365 103 85 80 chr4 93969692 93971033 -108357314 + pTR5 LTR ERV1 880 2438 0 21 0 0 0 chr4 93972254 93972275 -108356072 + AT_rich Low_complexity Low_complexity 1 21 0 6780 141 62 5 chr4 93972600 93972712 -108355635 + Tigger3b DNA MER2_type 1 105 -2923 2064 207 30 65 chr4 93972712 93973286 -108355061 - MER41C LTR ERV1 0 554 1 6780 141 62 5 chr4 93973286 93973472 -108354875 + Tigger3b DNA MER2_type 105 279 -2749 210 71 0 0 chr4 93973472 93973500 -108354847 + (TA)n Simple_repeat Simple_repeat 1 28 0 6780 141 62 5 chr4 93973500 93974365 -108353982 + Tigger3b DNA MER2_type 279 1231 0 1992 179 112 17 chr4 93974815 93975290 -108353057 + MLT2B1 LTR ERVL 1 520 0 604 214 55 32 chr4 93975823 93976043 -108352304 - L1MC4 LINE L1 -133 7909 7685 824 114 0 0 chr4 93978018 93978132 -108350215 - FLAM_C SINE Alu -17 116 3 241 259 19 74 chr4 93978409 93978517 -108349830 + MIR SINE MIR 91 192 -70 1425 165 31 88 chr4 93979509 93979725 -108348622 - MER31A LTR ERV1 -120 365 179 2044 144 3 0 chr4 93979725 93980031 -108348316 + AluSx SINE Alu 1 307 -5 1425 165 31 88 chr4 93980031 93980201 -108348146 - MER31A LTR ERV1 -306 179 1 294 79 0 0 chr4 93981612 93981650 -108346697 - U2 snRNA snRNA -150 38 1 2428 53 0 13 chr4 93983192 93983492 -108344855 + AluY SINE Alu 1 296 -15 241 225 42 28 chr4 93983544 93983615 -108344732 - MER5A DNA MER1_type -32 157 86 859 224 106 8 chr4 93984326 93984572 -108343775 - L1MD3 LINE L1 -6 7989 7720 336 192 13 51 chr4 93984578 93984656 -108343691 - MLT1F1 LTR MaLR -456 111 37 1566 140 77 7 chr4 93984657 93984957 -108343390 - L1MC3 LINE L1 -687 7098 6778 473 196 188 8 chr4 93986298 93986431 -108341916 + MER5B DNA MER1_type 2 158 -20 295 360 20 34 chr4 93986446 93986593 -108341754 - MER5A DNA MER1_type 0 189 45 2140 125 38 46 chr4 93988554 93988921 -108339426 + THE1B LTR MaLR 1 364 0 305 264 46 11 chr4 93989188 93989275 -108339072 - MIR3 SINE MIR -28 180 91 449 255 164 53 chr4 93989478 93989741 -108338606 + MLT1I LTR MaLR 92 383 -26 2178 180 68 2 chr4 93990191 93990591 -108337756 + MSTB LTR MaLR 1 426 0 333 302 52 0 chr4 93991199 93991315 -108337032 + MIR SINE MIR 71 192 -70 1734 166 14 141 chr4 93991320 93991879 -108336468 + LTR22B LTR ERVK 2 489 -3 1702 184 90 11 chr4 93992535 93992900 -108335447 + MSTD LTR MaLR 1 394 -2 3851 186 61 28 chr4 93993009 93993664 -108334683 + L1MB7 LINE L1 4796 5428 -756 1401 185 40 77 chr4 93993664 93994042 -108334305 + MLT1A1 LTR MaLR 2 365 0 3851 186 61 28 chr4 93994042 93994290 -108334057 + L1MB7 LINE L1 5428 5666 -518 2080 125 0 3 chr4 93994290 93994578 -108333769 + AluSc SINE Alu 1 287 -22 3851 186 61 28 chr4 93994578 93995004 -108333343 + L1MB7 LINE L1 5666 6175 -9 195 316 40 0 chr4 93995100 93995176 -108333171 + MIR3 SINE MIR 130 208 0 256 207 0 17 chr4 93995249 93995307 -108333040 + CT-rich Low_complexity Low_complexity 2 58 0 37 23 0 0 chr4 93995498 93995542 -108332805 + AT_rich Low_complexity Low_complexity 1 44 0 224 302 48 0 chr4 93995976 93996039 -108332308 + L2 LINE L2 3121 3186 -86 1863 244 41 41 chr4 93997093 93997705 -108330642 - L1MC4a LINE L1 -5 7803 7192 1830 199 11 8 chr4 93997706 93998063 -108330284 + MLT1A1 LTR MaLR 1 358 -7 3395 247 75 43 chr4 93998070 93998922 -108329425 - L1MD3 LINE L1 -751 7244 6330 1150 242 0 0 chr4 93998922 93999145 -108329202 + MER58A DNA MER1_type 1 223 -1 3395 247 75 43 chr4 93999145 93999648 -108328699 - L1MD3 LINE L1 -1665 6330 5845 285 140 0 20 chr4 93999652 93999702 -108328645 + MER58A DNA MER1_type 175 223 -1 2198 164 39 90 chr4 94000159 94000701 -108327646 + MLT2B2 LTR ERVL 1 514 -1 291 183 0 0 chr4 94000950 94001010 -108327337 - L1MD3 LINE L1 -302 5819 5760 766 203 0 0 chr4 94001013 94001146 -108327201 - FLAM_C SINE Alu 0 133 1 1299 112 58 40 chr4 94001711 94001767 -108326580 + MER30 DNA MER1_type 4 58 -172 3140 94 34 0 chr4 94001767 94002205 -108326142 - MLT2A2 LTR ERVL 0 453 1 1299 112 58 40 chr4 94002205 94002371 -108325976 + MER30 DNA MER1_type 58 230 0 2081 204 49 7 chr4 94002735 94003180 -108325167 + LTR53 LTR ERVL 56 519 0 743 243 125 30 chr4 94004162 94004458 -108323889 + MSTD LTR MaLR 9 332 -64 557 122 0 0 chr4 94004463 94004569 -108323778 + AluSg/x SINE Alu 197 302 0 452 237 129 5 chr4 94005955 94006141 -108322206 + L1MC4a LINE L1 5260 5468 -2340 534 263 30 73 chr4 94006243 94006543 -108321804 + L1MC4a LINE L1 5668 5954 -1854 29 28 0 0 chr4 94006690 94006726 -108321621 + AT_rich Low_complexity Low_complexity 1 36 0 447 252 81 8 chr4 94007125 94007248 -108321099 - MER114 LTR ERV -516 132 1 12263 147 14 6 chr4 94007287 94009416 -108318931 + L1PA10 LINE L1 1706 3851 -2295 6380 90 13 2 chr4 94009431 94010636 -108317711 + L1PA10 LINE L1 4951 6165 -3 2665 103 25 2 chr4 94010640 94011036 -108317311 + L1PA11 LINE L1 5769 6173 -1 42 20 0 0 chr4 94011162 94011211 -108317136 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr4 94011435 94011459 -108316888 + AT_rich Low_complexity Low_complexity 1 24 0 2125 150 12 0 chr4 94012457 94012790 -108315557 + MER1B DNA MER1_type 1 337 0 2774 122 14 2 chr4 94013901 94014343 -108314004 - L1PA15 LINE L1 -1 6164 5718 326 87 0 0 chr4 94014343 94014389 -108313958 + L1P LINE L1 4594 4639 -1507 22 56 0 0 chr4 94014871 94014907 -108313440 + AT_rich Low_complexity Low_complexity 1 36 0 429 20 0 0 chr4 94015183 94015233 -108313114 + (GAA)n Simple_repeat Simple_repeat 2 51 0 279 300 0 0 chr4 94016192 94016262 -108312085 - Charlie8 DNA MER1_type -989 1428 1359 2174 88 3 14 chr4 94016403 94016699 -108311648 + AluY SINE Alu 1 293 -18 338 346 138 17 chr4 94017399 94017639 -108310708 - L1MC/D LINE L1 -427 5815 5547 1260 161 39 39 chr4 94018511 94018765 -108309582 - MER61B LTR ERV1 -29 396 143 216 180 33 16 chr4 94018793 94018854 -108309493 + (GGGTG)n Simple_repeat Simple_repeat 5 66 0 551 161 0 0 chr4 94018862 94018955 -108309392 - MER61B LTR ERV1 -305 120 28 353 152 30 0 chr4 94018966 94019032 -108309315 + pTR5 LTR ERV1 737 804 -1634 1627 115 4 0 chr4 94019132 94019358 -108308989 + AluSp SINE Alu 86 312 -1 2551 223 29 55 chr4 94019363 94020080 -108308267 + L1M4b LINE L1 1562 2348 -4611 2140 116 0 26 chr4 94020080 94020391 -108307956 + AluSg SINE Alu 4 306 -4 2551 223 29 55 chr4 94020391 94020803 -108307544 + L1M4b LINE L1 2348 2769 -4190 239 345 27 0 chr4 94020927 94021015 -108307332 + MIR SINE MIR 68 161 -101 204 40 0 0 chr4 94021015 94021040 -108307307 + (CAT)n Simple_repeat Simple_repeat 3 27 0 239 345 27 0 chr4 94021040 94021061 -108307286 + MIR SINE MIR 161 180 -82 271 271 37 19 chr4 94021429 94021536 -108306811 + LTR67 LTR ERVL 435 543 -14 726 296 134 21 chr4 94021564 94021892 -108306455 - LTR16A LTR ERVL -10 440 76 586 347 34 49 chr4 94022126 94022723 -108305624 - ERVL LTR ERVL -381 5383 4796 211 196 13 106 chr4 94023242 94023319 -108305028 - MIR SINE MIR -66 142 71 636 253 58 58 chr4 94023980 94024223 -108304124 - MER21B LTR ERV1 -23 582 427 11185 177 91 12 chr4 94024271 94028303 -108300044 + L1PB1 LINE L1 114 4464 -2398 3713 130 3 0 chr4 94028303 94028876 -108299471 + L1PB1 LINE L1 6291 6867 0 438 242 39 109 chr4 94028877 94029270 -108299077 - MER77 LTR ERV1 -267 338 54 1691 139 54 20 chr4 94029704 94029999 -108298348 - AluJb SINE Alu -6 306 2 4237 107 27 8 chr4 94030641 94031302 -108297045 - L1MA5A LINE L1 -3 6294 5621 557 303 173 0 chr4 94031857 94032042 -108296305 + MIR SINE MIR 45 261 -1 308 324 147 0 chr4 94034767 94034903 -108293444 - MIR SINE MIR -60 202 47 200 188 0 0 chr4 94035258 94035290 -108293057 + (CA)n Simple_repeat Simple_repeat 2 33 0 200 369 57 16 chr4 94035358 94035480 -108292867 + MIR SINE MIR 14 140 -122 261 87 22 0 chr4 94035503 94035549 -108292798 - MADE1 DNA Mariner -33 47 1 386 318 107 47 chr4 94035652 94035951 -108292396 - MLT1K LTR MaLR -81 507 191 3222 288 62 20 chr4 94036007 94036064 -108292283 - L2 LINE L2 -1089 2225 2172 2631 130 28 9 chr4 94036064 94036501 -108291846 - MER65A LTR ERV1 0 445 1 3222 288 62 20 chr4 94036501 94037563 -108290784 - L2 LINE L2 -1142 2172 1060 480 355 96 41 chr4 94037567 94037993 -108290354 + L2 LINE L2 2570 3029 -243 2327 53 3 0 chr4 94037993 94038316 -108290031 + AluY SINE Alu 1 324 0 480 355 96 41 chr4 94038316 94038372 -108289975 + L2 LINE L2 3029 3080 -192 616 316 5 15 chr4 94039153 94039349 -108288998 - MIR SINE MIR -32 230 37 225 94 0 0 chr4 94040669 94040701 -108287646 + (TTTTC)n Simple_repeat Simple_repeat 3 34 0 3461 121 65 0 chr4 94040810 94041330 -108287017 + MER41C LTR ERV1 1 554 0 326 209 46 186 chr4 94041428 94041691 -108286656 + MLT1L LTR MaLR 7 232 -383 2829 22 0 0 chr4 94041913 94042229 -108286118 - AluYb8 SINE Alu -2 316 1 1638 181 283 21 chr4 94042426 94043054 -108285293 + LTR48 LTR ERV1 1 707 0 1932 123 10 17 chr4 94043906 94044207 -108284140 + AluSx SINE Alu 1 299 -13 321 243 75 19 chr4 94044333 94044440 -108283907 - LTR33 LTR ERVL -7 514 402 982 230 31 68 chr4 94044440 94044791 -108283556 + MER21B LTR ERV1 430 730 -6 407 255 23 3 chr4 94044863 94044986 -108283361 - LTR33 LTR ERVL -137 384 252 * 1824 200 46 39 chr4 94044980 94045510 -108282837 + LTR26E LTR ERV1 8 622 0 603 293 17 11 chr4 94045512 94045686 -108282661 - LTR33 LTR ERVL -278 243 69 375 211 11 11 chr4 94045973 94046063 -108282284 - MLT1J LTR MaLR -5 506 417 272 146 36 0 chr4 94047278 94047333 -108281014 + GA-rich Low_complexity Low_complexity 3 59 0 197 270 90 54 chr4 94048472 94048583 -108279764 - MIR SINE MIR -17 245 131 471 269 171 32 chr4 94049008 94049224 -108279123 - MIR SINE MIR -15 247 2 199 229 257 0 chr4 94049621 94049691 -108278656 - MIR SINE MIR 0 262 175 37 52 0 0 chr4 94050079 94050137 -108278210 + AT_rich Low_complexity Low_complexity 1 58 0 300 301 88 36 chr4 94050645 94050838 -108277509 - L1ME4a LINE L1 -238 5883 5681 392 311 43 43 chr4 94050918 94051175 -108277172 - L1ME4a LINE L1 -477 5644 5388 180 319 193 25 chr4 94051766 94051885 -108276462 - MIR3 SINE MIR -36 172 34 279 191 0 32 chr4 94052559 94052622 -108275725 - AluJo SINE Alu 0 302 242 828 188 0 32 chr4 94052622 94052776 -108275571 - AluJo SINE Alu -161 151 3 241 337 0 31 chr4 94052856 94052954 -108275393 + MIR SINE MIR 32 126 -136 258 82 16 33 chr4 94053013 94053074 -108275273 + (TA)n Simple_repeat Simple_repeat 1 60 0 190 74 0 0 chr4 94053111 94053138 -108275209 + MIR SINE MIR 224 250 -12 662 191 0 7 chr4 94054274 94054421 -108273926 + GA-rich Low_complexity Low_complexity 3 148 0 236 198 33 44 chr4 94054578 94054669 -108273678 + L1MC4 LINE L1 6614 6703 -1339 * 277 247 0 0 chr4 94054650 94054739 -108273608 - L1MC4 LINE L1 -1340 6702 6614 307 271 47 0 chr4 94054742 94054827 -108273520 - L1MC4 LINE L1 -1340 6702 6614 335 303 0 0 chr4 94054830 94054919 -108273428 - L1MC4 LINE L1 -1340 6702 6614 2223 89 3 10 chr4 94054926 94055219 -108273128 - AluSg SINE Alu -19 291 1 368 271 66 18 chr4 94055220 94055386 -108272961 + L1ME4a LINE L1 5604 5777 -344 1759 220 87 103 chr4 94055408 94056267 -108272080 + LTR1B LTR ERV1 1 983 -37 226 278 120 23 chr4 94056405 94056538 -108271809 + L1ME4a LINE L1 5975 6120 -1 262 283 43 11 chr4 94057599 94057691 -108270656 - MIR SINE MIR -69 139 45 481 297 206 20 chr4 94057935 94058289 -108270058 + L3 LINE CR1 427 846 -731 257 227 29 122 chr4 94059269 94059441 -108268906 - MER103 DNA DNA -9 157 2 2028 141 0 0 chr4 94059873 94060172 -108268175 + AluSx SINE Alu 1 299 -13 38 0 0 0 chr4 94061115 94061153 -108267194 + AT_rich Low_complexity Low_complexity 1 38 0 7264 42 14 0 chr4 94061153 94062243 -108266104 - L1PA5 LINE L1 -8 6146 5051 17065 48 3 1 chr4 94062243 94064397 -108263950 + L1PA5 LINE L1 2889 5048 -1098 28 0 0 0 chr4 94065166 94065194 -108263153 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 94065398 94065427 -108262920 + AT_rich Low_complexity Low_complexity 1 29 0 208 222 0 0 chr4 94065484 94065529 -108262818 + (TG)n Simple_repeat Simple_repeat 1 45 0 39 88 0 0 chr4 94066503 94066605 -108261742 + AT_rich Low_complexity Low_complexity 1 102 0 2075 119 18 0 chr4 94066618 94066903 -108261444 + AluSq SINE Alu 7 296 -17 21 95 0 0 chr4 94066907 94066970 -108261377 + AT_rich Low_complexity Low_complexity 1 63 0 23 54 0 0 chr4 94067630 94067667 -108260680 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr4 94069194 94069224 -108259123 + AT_rich Low_complexity Low_complexity 1 30 0 299 80 40 0 chr4 94069284 94069334 -108259013 + CT-rich Low_complexity Low_complexity 1 52 0 1711 141 34 48 chr4 94069680 94069971 -108258376 + AluSx SINE Alu 4 290 -22 226 235 0 20 chr4 94070212 94070263 -108258084 + GA-rich Low_complexity Low_complexity 2 51 0 1530 187 80 37 chr4 94070386 94070760 -108257587 - MLT1B LTR MaLR 0 390 1 24 0 0 0 chr4 94071815 94071839 -108256508 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr4 94071855 94071886 -108256461 + AT_rich Low_complexity Low_complexity 1 31 0 588 306 81 78 chr4 94073815 94074419 -108253928 + L1MDa LINE L1 1501 2106 -4434 234 212 20 81 chr4 94074777 94074876 -108253471 + L1MC4 LINE L1 7920 8012 -30 24 0 0 0 chr4 94075053 94075077 -108253270 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 94075773 94075797 -108252550 + AT_rich Low_complexity Low_complexity 1 24 0 303 290 38 75 chr4 94075804 94075990 -108252357 + HAL1 LINE L1 6 184 -2323 239 0 32 0 chr4 94075991 94076022 -108252325 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1551 248 46 22 chr4 94076283 94076739 -108251608 - MLT1C LTR MaLR 0 467 1 234 328 31 8 chr4 94076801 94076929 -108251418 + L1MCa LINE L1 1503 1633 -4793 26 0 0 0 chr4 94077710 94077736 -108250611 + AT_rich Low_complexity Low_complexity 1 26 0 583 247 11 23 chr4 94080983 94081157 -108247190 + MER112 DNA MER1_type 1 172 -88 2494 84 0 0 chr4 94081622 94081933 -108246414 + AluY SINE Alu 1 311 0 506 173 10 0 chr4 94081934 94082038 -108246309 + (TA)n Simple_repeat Simple_repeat 1 105 0 451 177 76 86 chr4 94082456 94082654 -108245693 - L1ME2 LINE L1 -6 6158 5963 523 169 0 0 chr4 94082660 94082749 -108245598 - LTR40b LTR ERVL -5 457 369 334 180 0 34 chr4 94083192 94083281 -108245066 + L1MA8 LINE L1 6205 6290 -1 5400 166 29 14 chr4 94083334 94084658 -108243689 - L1MA4 LINE L1 -1 6299 4962 2176 133 0 0 chr4 94084658 94084960 -108243387 - AluSg SINE Alu -8 302 1 5400 166 29 14 chr4 94084960 94085004 -108243343 - L1MA4 LINE L1 -1338 4962 4920 195 129 0 0 chr4 94085004 94085035 -108243312 + (TC)n Simple_repeat Simple_repeat 2 32 0 325 58 39 0 chr4 94085041 94085093 -108243254 + (TTTCC)n Simple_repeat Simple_repeat 5 58 0 1530 167 64 19 chr4 94085104 94085368 -108242979 - AluSx SINE Alu -36 276 1 730 154 23 0 chr4 94085371 94085501 -108242846 - L1MA4 LINE L1 -1214 4932 4800 31231 103 22 32 chr4 94085898 94089691 -108238656 + L1PA7 LINE L1 10 3841 -2628 3069 167 23 14 chr4 94089691 94090266 -108238081 - LTR22 LTR ERVK 0 580 1 31231 103 22 32 chr4 94090266 94092849 -108235498 + L1PA7 LINE L1 3841 6449 -20 249 33 0 0 chr4 94092849 94092879 -108235468 + (TG)n Simple_repeat Simple_repeat 2 31 0 270 136 0 0 chr4 94092880 94092924 -108235423 + (TA)n Simple_repeat Simple_repeat 1 44 0 23 33 0 0 chr4 94093060 94093090 -108235257 + AT_rich Low_complexity Low_complexity 1 30 0 198 103 0 0 chr4 94093251 94093280 -108235067 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 301 276 121 31 chr4 94093725 94094112 -108234235 - L1MEd LINE L1 -3519 2610 2189 4411 98 70 139 chr4 94094231 94095407 -108232940 - pTR5 LTR ERV1 0 2429 31 467 262 90 34 chr4 94095872 94096029 -108232318 - HAL1 LINE L1 -861 1646 1470 2559 110 53 12 chr4 94096029 94096446 -108231901 + MER61C LTR ERV1 1 434 0 467 262 90 34 chr4 94096446 94096521 -108231826 - HAL1 LINE L1 -1037 1470 1401 403 249 78 95 chr4 94096574 94096920 -108231427 - L1MEd LINE L1 -5036 1083 744 397 385 8 20 chr4 94096938 94097187 -108231160 - L1M4 LINE L1 -1836 4310 4065 21 36 0 0 chr4 94097412 94097440 -108230907 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 94098008 94098036 -108230311 + AT_rich Low_complexity Low_complexity 1 28 0 483 247 48 108 chr4 94100465 94100631 -108227716 - MLT1H LTR MaLR -14 535 375 844 218 120 5 chr4 94100653 94100869 -108227478 - MLT1H LTR MaLR -296 253 13 830 268 35 75 chr4 94101736 94102157 -108226190 - L2 LINE L2 -275 3038 2623 555 298 165 50 chr4 94102159 94102602 -108225745 + LTR33A LTR ERVL 4 497 -26 486 257 0 0 chr4 94102632 94102737 -108225610 - L2 LINE L2 -689 2625 2521 1688 232 22 56 chr4 94102762 94103210 -108225137 + MER21B LTR ERV1 32 464 -399 1071 274 38 35 chr4 94103211 94103579 -108224768 - L2 LINE L2 -793 2521 2153 797 222 43 48 chr4 94103642 94103709 -108224638 + MER3 DNA MER1_type 3 69 -140 2198 193 43 22 chr4 94103709 94104202 -108224145 - MLT1D LTR MaLR 0 505 3 797 222 43 48 chr4 94104202 94104341 -108224006 + MER3 DNA MER1_type 69 208 -1 245 186 0 0 chr4 94104307 94104350 -108223997 - MER3 DNA MER1_type -127 82 40 * 613 248 53 0 chr4 94104350 94104483 -108223864 - L2 LINE L2 -2011 1303 1164 2246 141 17 11 chr4 94104494 94104856 -108223491 - THE1B LTR MaLR 0 364 1 2199 96 3 7 chr4 94105019 94105311 -108223036 - AluSx SINE Alu -21 291 1 829 124 0 0 chr4 94105326 94105439 -108222908 - AluSg SINE Alu -197 113 1 351 333 17 17 chr4 94105912 94106032 -108222315 + L1MEd LINE L1 505 624 -5495 446 227 0 102 chr4 94106169 94106297 -108222050 + FLAM_A SINE Alu 2 116 -17 225 160 0 20 chr4 94106706 94106756 -108221591 + HAL1 LINE L1 2078 2126 -381 7000 98 23 0 chr4 94106763 94107768 -108220579 + L1MA2 LINE L1 5277 6304 0 22 0 0 0 chr4 94107994 94108016 -108220331 + AT_rich Low_complexity Low_complexity 1 22 0 372 283 48 21 chr4 94108084 94108229 -108220118 + HAL1 LINE L1 2249 2397 -110 332 308 105 39 chr4 94108415 94108819 -108219528 - L1 LINE L1 -3210 2936 2498 1099 230 63 55 chr4 94109029 94109408 -108218939 + L1ME LINE L1 24 405 -6137 1435 187 15 8 chr4 94109422 94109689 -108218658 - AluJo SINE Alu -26 286 18 4165 230 53 53 chr4 94109692 94111462 -108216885 + L1ME LINE L1 391 2335 -4490 22 35 0 0 chr4 94111493 94111522 -108216825 + AT_rich Low_complexity Low_complexity 1 29 0 442 298 62 92 chr4 94111591 94112028 -108216319 + L1ME LINE L1 4526 4949 -1695 944 215 51 0 chr4 94112259 94112454 -108215893 - MER3 DNA MER1_type -4 205 1 238 223 96 0 chr4 94112476 94112570 -108215777 + L1ME LINE L1 6003 6105 -514 2008 136 37 37 chr4 94112801 94113176 -108215171 + THE1C LTR MaLR 1 375 0 2408 90 3 0 chr4 94114868 94115219 -108213128 - AluSq SINE Alu 0 352 1 335 313 62 8 chr4 94115485 94115613 -108212734 + MIR3 SINE MIR 63 197 -11 824 161 29 35 chr4 94115649 94115823 -108212524 - L1MD1 LINE L1 -5 6237 6065 216 344 75 11 chr4 94116619 94116712 -108211635 - L2 LINE L2 0 3272 3174 281 221 46 8 chr4 94116717 94116848 -108211499 + (TA)n Simple_repeat Simple_repeat 2 137 0 927 248 75 92 chr4 94116999 94117423 -108210924 - MLT1G3 LTR MaLR -178 417 1 309 328 52 20 chr4 94117947 94118197 -108210150 + MIR SINE MIR 2 259 -3 218 402 69 26 chr4 94118962 94119308 -108209039 + L2 LINE L2 211 571 -2743 267 373 7 7 chr4 94119308 94119450 -108208897 - HERV16 LTR ERVL -2397 3367 3226 255 342 43 21 chr4 94119566 94119747 -108208600 - LTR40b LTR ERVL -178 341 152 1410 343 58 22 chr4 94119906 94120563 -108207784 - HERV16 LTR ERVL -1911 3085 2460 655 299 20 69 chr4 94120598 94120902 -108207445 - HERV16 LTR ERVL -3296 2358 2070 276 346 29 0 chr4 94121269 94121373 -108206974 - HERV16 LTR ERVL -3418 1578 1472 2238 92 0 0 chr4 94121389 94121696 -108206651 - AluSg1 SINE Alu 0 307 1 1702 315 63 35 chr4 94121816 94122957 -108205390 - HERV16 LTR ERVL -3609 1387 191 2003 142 0 0 chr4 94124627 94124935 -108203412 + AluSq SINE Alu 1 308 0 389 244 61 0 chr4 94128016 94128131 -108200216 - MER103 DNA DNA -2 164 43 2270 107 0 3 chr4 94129189 94129498 -108198849 - AluSg SINE Alu 0 310 3 24 0 0 0 chr4 94129582 94129606 -108198741 + AT_rich Low_complexity Low_complexity 1 24 0 304 294 124 40 chr4 94129687 94129864 -108198483 - MIR SINE MIR -34 228 37 21 0 0 0 chr4 94129879 94129900 -108198447 + AT_rich Low_complexity Low_complexity 1 21 0 1806 61 4 0 chr4 94130000 94130231 -108198116 + L1PA6 LINE L1 5921 6152 -2 21 36 0 0 chr4 94130231 94130259 -108198088 + AT_rich Low_complexity Low_complexity 1 28 0 306 0 0 0 chr4 94130427 94130461 -108197886 + (CA)n Simple_repeat Simple_repeat 2 35 0 240 35 0 0 chr4 94130702 94130731 -108197616 + (TTG)n Simple_repeat Simple_repeat 2 30 0 500 262 35 7 chr4 94135494 94135639 -108192708 - MIR SINE MIR -13 249 101 2206 106 3 7 chr4 94136800 94137102 -108191245 + AluSx SINE Alu 1 301 -11 209 235 0 10 chr4 94137108 94137210 -108191137 + (TA)n Simple_repeat Simple_repeat 2 102 0 264 77 0 0 chr4 94137212 94137251 -108191096 + (TG)n Simple_repeat Simple_repeat 2 40 0 819 265 42 0 chr4 94137450 94137665 -108190682 + MIR SINE MIR 13 236 -26 2490 219 90 65 chr4 94137970 94138774 -108189573 - MER21B LTR ERV1 -21 842 19 399 234 13 0 chr4 94138796 94138873 -108189474 - MER21B LTR ERV1 -773 90 13 24 0 0 0 chr4 94139854 94139878 -108188469 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr4 94140088 94140110 -108188237 + (A)n Simple_repeat Simple_repeat 1 22 0 * 222 91 0 0 chr4 94140109 94140142 -108188205 + (GA)n Simple_repeat Simple_repeat 2 34 0 311 158 158 105 chr4 94140167 94140262 -108188085 + MER103 DNA DNA 22 121 -45 849 247 32 4 chr4 94140350 94140597 -108187750 + L1M4 LINE L1 2318 2571 -3575 352 353 18 47 chr4 94141646 94141816 -108186531 + MIR3 SINE MIR 37 201 -7 194 227 23 0 chr4 94142435 94142479 -108185868 + L2 LINE L2 3224 3268 -4 1777 153 14 0 chr4 94142710 94142985 -108185362 - AluSx SINE Alu -29 283 5 1113 192 14 52 chr4 94143074 94143360 -108184987 - L1M4 LINE L1 -2446 3700 3426 673 254 0 64 chr4 94143679 94143852 -108184495 - MER58C DNA MER1_type 0 215 54 1836 148 7 14 chr4 94144416 94144707 -108183640 + AluJb SINE Alu 2 290 -22 29 60 0 0 chr4 94145498 94145548 -108182799 + AT_rich Low_complexity Low_complexity 1 50 0 2418 162 25 7 chr4 94146090 94146523 -108181824 + MER6 DNA MER2_type 165 865 0 1541 109 13 4 chr4 94146782 94147045 -108181302 + AluSc SINE Alu 65 309 0 804 264 59 34 chr4 94147058 94147498 -108180849 + L1MC5 LINE L1 7309 7759 -202 1640 187 18 26 chr4 94147578 94147920 -108180427 + MER44D DNA MER2_type 1 609 0 24 0 0 0 chr4 94149113 94149137 -108179210 + AT_rich Low_complexity Low_complexity 1 24 0 182 243 14 54 chr4 94149152 94149226 -108179121 + MER5A DNA MER1_type 11 81 -108 2081 194 55 2 chr4 94149487 94149925 -108178422 - MER65C LTR ERV1 0 461 1 535 177 35 9 chr4 94150568 94150681 -108177666 + U5 snRNA snRNA 1 116 0 26 30 0 0 chr4 94151289 94151322 -108177025 + AT_rich Low_complexity Low_complexity 1 33 0 198 150 0 0 chr4 94151625 94151665 -108176682 + (CA)n Simple_repeat Simple_repeat 2 41 0 1823 173 0 10 chr4 94152120 94152421 -108175926 - AluJo SINE Alu -11 301 4 2580 55 0 3 chr4 94153233 94153544 -108174803 - AluY SINE Alu -1 310 1 418 290 43 9 chr4 94154377 94154563 -108173784 - MIR SINE MIR 0 262 3 230 147 0 103 chr4 94154776 94154844 -108173503 - L1MC4 LINE L1 -1340 6702 6642 239 54 27 0 chr4 94155070 94155107 -108173240 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 294 29 0 0 chr4 94155700 94155735 -108172612 + (TG)n Simple_repeat Simple_repeat 2 36 0 276 214 36 0 chr4 94156070 94156126 -108172221 - MIR SINE MIR -1 261 204 2173 97 3 0 chr4 94156287 94156577 -108171770 + AluSc SINE Alu 1 291 -18 1574 239 106 16 chr4 94156847 94157291 -108171056 - LTR40a LTR ERVL -4 515 32 194 295 146 84 chr4 94157300 94158053 -108170294 - L2 LINE L2 -816 2498 1699 181 361 105 8 chr4 94158345 94158478 -108169869 - MIR SINE MIR -106 156 11 2173 112 0 0 chr4 94160157 94160453 -108167894 + AluSx SINE Alu 1 296 -16 438 20 0 0 chr4 94161996 94162047 -108166300 + (CA)n Simple_repeat Simple_repeat 1 51 0 196 340 85 11 chr4 94162570 94162664 -108165683 + L2 LINE L2 3169 3269 -3 440 297 7 35 chr4 94163208 94163353 -108164994 + MER5A DNA MER1_type 35 175 -14 1879 137 17 0 chr4 94164046 94164345 -108164002 - AluSq SINE Alu -9 304 1 255 203 0 0 chr4 94164696 94164765 -108163582 + (TA)n Simple_repeat Simple_repeat 1 69 0 1759 145 3 21 chr4 94164846 94165155 -108163192 - AluSx SINE Alu 0 312 5 511 246 76 18 chr4 94165186 94165357 -108162990 + LTR37B LTR ERV1 7 187 -281 711 210 66 31 chr4 94165518 94165775 -108162572 + LTR37B LTR ERV1 198 463 -5 21 0 0 0 chr4 94166882 94166903 -108161444 + AT_rich Low_complexity Low_complexity 1 21 0 222 211 19 0 chr4 94167375 94167427 -108160920 + (TTG)n Simple_repeat Simple_repeat 2 54 0 323 348 111 32 chr4 94167462 94167715 -108160632 + L2 LINE L2 2704 2976 -338 25 0 0 0 chr4 94169146 94169171 -108159176 + AT_rich Low_complexity Low_complexity 1 25 0 38 61 0 0 chr4 94169948 94170014 -108158333 + AT_rich Low_complexity Low_complexity 1 66 0 46 54 0 0 chr4 94170362 94170436 -108157911 + AT_rich Low_complexity Low_complexity 1 74 0 2355 99 3 0 chr4 94170546 94170858 -108157489 - AluSp SINE Alu 0 313 1 1966 107 46 4 chr4 94172863 94173143 -108155204 - AluY SINE Alu -19 292 1 233 169 15 31 chr4 94173494 94173559 -108154788 - L1MA4 LINE L1 -1 6299 6236 * 442 143 49 13 chr4 94173545 94173641 -108154706 + L1M2 LINE L1 5680 5772 -399 180 111 0 0 chr4 94174596 94174623 -108153724 + (T)n Simple_repeat Simple_repeat 1 27 0 296 217 87 0 chr4 94174665 94174734 -108153613 + L2 LINE L2 3198 3272 0 401 263 195 14 chr4 94176234 94176417 -108151930 - MIR SINE MIR 0 262 49 187 283 0 17 chr4 94176960 94177020 -108151327 + L2 LINE L2 3249 3307 -6 440 286 157 11 chr4 94177601 94177786 -108150561 - MIR SINE MIR -8 254 43 203 362 87 8 chr4 94178650 94178777 -108149570 - L2 LINE L2 0 3272 3136 2310 75 10 7 chr4 94179215 94179510 -108148837 - AluSc SINE Alu -13 296 1 1392 142 0 19 chr4 94180041 94180252 -108148095 + AluSg/x SINE Alu 87 293 -19 22 0 0 0 chr4 94181160 94181182 -108147165 + AT_rich Low_complexity Low_complexity 1 22 0 3270 202 14 53 chr4 94182065 94182399 -108145948 - L1MA9 LINE L1 -24 6288 5943 2160 123 3 0 chr4 94182399 94182700 -108145647 - AluSq SINE Alu -11 302 1 3270 202 14 53 chr4 94182700 94183192 -108145155 - L1MA9 LINE L1 -369 5943 5494 1519 133 16 35 chr4 94183194 94183309 -108145038 - MER2 DNA MER2_type -95 250 134 1492 116 122 66 chr4 94183309 94183628 -108144719 - MER1B DNA MER1_type 0 337 1 1519 133 16 35 chr4 94183628 94183767 -108144580 - MER2 DNA MER2_type -211 134 1 1736 154 10 7 chr4 94184159 94184452 -108143895 - AluSx SINE Alu -18 294 1 204 225 0 0 chr4 94184681 94184721 -108143626 + (CA)n Simple_repeat Simple_repeat 2 41 0 242 292 108 39 chr4 94186533 94186663 -108141684 + LTR16C LTR ERVL 349 487 -4 209 364 11 0 chr4 94186769 94186857 -108141490 + L2 LINE L2 3184 3272 0 2027 100 0 88 chr4 94187271 94187610 -108140737 - AluSg SINE Alu -1 309 1 22 0 0 0 chr4 94187893 94187915 -108140432 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 94187924 94187955 -108140392 + AT_rich Low_complexity Low_complexity 1 31 0 275 284 100 113 chr4 94189010 94189320 -108139027 - L2 LINE L2 -57 3215 2910 1684 181 6 0 chr4 94189323 94189661 -108138686 + L1 LINE L1 4558 4897 -1249 14675 197 11 16 chr4 94190823 94192420 -108135927 + L1PB1 LINE L1 1551 3154 -3061 2041 129 0 0 chr4 94192420 94192735 -108135612 + AluSq SINE Alu 7 321 0 14675 197 11 16 chr4 94192735 94195755 -108132592 + L1PB1 LINE L1 3154 6210 -5 24 67 0 0 chr4 94198149 94198194 -108130153 + AT_rich Low_complexity Low_complexity 1 45 0 213 154 0 0 chr4 94198531 94198570 -108129777 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 281 265 15 15 chr4 94199065 94199133 -108129214 + MIR SINE MIR 54 121 -87 26 30 0 0 chr4 94200237 94200270 -108128077 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4 94200512 94200540 -108127807 + AT_rich Low_complexity Low_complexity 1 28 0 30 27 0 0 chr4 94200669 94200706 -108127641 + AT_rich Low_complexity Low_complexity 1 37 0 286 331 24 8 chr4 94200864 94200988 -108127359 - MIR SINE MIR -64 144 19 273 49 0 0 chr4 94201378 94201419 -108126928 + AluY SINE Alu 262 302 0 253 363 9 9 chr4 94202153 94202266 -108126081 + L2 LINE L2 3158 3270 -2 375 285 93 26 chr4 94202316 94202467 -108125880 + MLT1J2 LTR MaLR 1 161 -289 674 273 113 18 chr4 94202717 94202847 -108125500 - L1MC4 LINE L1 -7 8035 7919 345 82 0 0 chr4 94202847 94202896 -108125451 + (TG)n Simple_repeat Simple_repeat 2 50 0 674 273 113 18 chr4 94202896 94203040 -108125307 - L1MC4 LINE L1 -123 7919 7735 180 0 0 0 chr4 94205784 94205804 -108122543 + (T)n Simple_repeat Simple_repeat 1 20 0 1638 136 71 23 chr4 94205804 94206112 -108122235 - THE1C LTR MaLR -52 323 1 589 13 0 25 chr4 94206184 94206263 -108122084 - L1PA2 LINE L1 -1 6154 6078 320 260 75 48 chr4 94206605 94206751 -108121596 - MIR3 SINE MIR -7 201 52 325 0 0 0 chr4 94207073 94207109 -108121238 + (TTG)n Simple_repeat Simple_repeat 1 180 0 2169 92 0 11 chr4 94207109 94207390 -108120957 - AluSc SINE Alu -1 313 1 808 219 122 15 chr4 94207713 94207909 -108120438 - MLT1D LTR MaLR -1 504 288 466 267 28 44 chr4 94207909 94208089 -108120258 + L2 LINE L2 3137 3313 0 264 255 166 25 chr4 94208118 94208275 -108120072 + MIR SINE MIR 84 262 0 406 293 109 6 chr4 94208296 94208470 -108119877 + L2 LINE L2 3118 3309 -4 1716 168 30 20 chr4 94210118 94210416 -108117931 - AluJb SINE Alu -10 302 2 2147 118 0 0 chr4 94210763 94211052 -108117295 + AluSx SINE Alu 1 289 -23 341 274 6 34 chr4 94211646 94211664 -108116683 - L1MA10 LINE L1 -2 6332 6315 514 233 21 63 chr4 94211664 94211853 -108116494 - L1ME2 LINE L1 -7 6159 5979 789 284 113 62 chr4 94211864 94212297 -108116050 + LTR16B LTR ERVL 4 458 -6 1090 206 97 6 chr4 94212301 94212625 -108115722 - L1ME2 LINE L1 -179 5987 5627 279 236 302 0 chr4 94212626 94212732 -108115615 - MIR SINE MIR -124 138 1 1377 148 9 9 chr4 94213342 94213572 -108114775 + MER30 DNA MER1_type 1 230 0 1067 211 69 0 chr4 94213580 94213883 -108114464 - MER33 DNA MER1_type 0 324 1 765 279 62 90 chr4 94215430 94215516 -108112831 + LTR33 LTR ERVL 1 88 -433 581 176 176 75 chr4 94215516 94215715 -108112632 - MER20 DNA MER1_type 0 219 1 765 279 62 90 chr4 94215715 94216162 -108112185 + LTR33 LTR ERVL 88 519 -2 183 253 11 99 chr4 94216586 94216677 -108111670 - L2 LINE L2 -2 3270 3188 186 197 131 0 chr4 94216783 94216844 -108111503 + L2 LINE L2 3242 3310 -3 1779 171 38 0 chr4 94217193 94217349 -108110998 - AluSx SINE Alu -14 298 125 977 62 22 34 chr4 94217349 94217528 -108110819 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 1779 171 38 0 chr4 94217528 94217658 -108110689 - AluSx SINE Alu -187 125 1 4361 161 41 13 chr4 94217658 94218344 -108110003 - L1MC2 LINE L1 -13 6331 5615 1959 134 34 47 chr4 94218344 94218724 -108109623 + THE1C LTR MaLR 1 375 0 4361 161 41 13 chr4 94218724 94218900 -108109447 - L1MC2 LINE L1 -729 5615 5445 240 266 97 37 chr4 94219278 94219405 -108108942 + MIR SINE MIR 16 147 -65 214 191 0 0 chr4 94219442 94219484 -108108863 + (TAA)n Simple_repeat Simple_repeat 1 42 0 360 231 173 19 chr4 94219667 94219823 -108108524 - MIR SINE MIR -16 246 67 819 102 8 8 chr4 94220725 94220843 -108107504 + FLAM_C SINE Alu 1 118 -25 180 0 0 0 chr4 94220844 94220864 -108107483 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1192 285 40 44 chr4 94223246 94223720 -108104627 - L2 LINE L2 -383 2931 2460 327 65 0 0 chr4 94224253 94224299 -108104048 + (CA)n Simple_repeat Simple_repeat 2 47 0 1384 191 8 102 chr4 94225073 94225445 -108102902 + MLT1A1 LTR MaLR 29 365 0 2141 127 0 0 chr4 94226018 94226318 -108102029 - AluSx SINE Alu -12 300 1 424 200 86 43 chr4 94226722 94226862 -108101485 + MER20 DNA MER1_type 46 191 -28 576 305 106 14 chr4 94226960 94227308 -108101039 - L1ME4a LINE L1 -206 5915 5536 183 324 111 0 chr4 94229082 94229190 -108099157 - MIR SINE MIR -56 206 87 384 311 134 19 chr4 94229245 94229401 -108098946 - MIR3 SINE MIR -30 178 6 633 196 42 119 chr4 94230958 94231218 -108097129 + L1MA9 LINE L1 6036 6275 -37 369 352 7 21 chr4 94231875 94232017 -108096330 + L2 LINE L2 3128 3267 -5 212 266 16 16 chr4 94233346 94233410 -108094937 - L2 LINE L2 -2 3270 3207 236 239 45 0 chr4 94233866 94233933 -108094414 - L1 LINE L1 -3228 2918 2849 266 328 129 38 chr4 94234388 94234574 -108093773 - MIR3 SINE MIR -2 206 4 282 265 29 73 chr4 94234967 94235103 -108093244 + MIR3 SINE MIR 56 185 -23 389 318 12 61 chr4 94235749 94235994 -108092353 - L2 LINE L2 -2 3311 3079 712 145 6 25 chr4 94235994 94236153 -108092194 + GA-rich Low_complexity Low_complexity 2 157 0 261 283 0 0 chr4 94236236 94236297 -108092050 - L2 LINE L2 -357 2915 2866 2093 129 14 0 chr4 94237592 94237756 -108090591 - AluSq SINE Alu -15 298 127 189 0 0 0 chr4 94237756 94237777 -108090570 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2093 129 14 0 chr4 94237777 94237906 -108090441 - AluSq SINE Alu -186 127 1 537 114 121 68 chr4 94238251 94238383 -108089964 + L1MA6 LINE L1 5870 6008 -292 2281 67 0 3 chr4 94238535 94238851 -108089496 - AluY SINE Alu 0 315 1 24 67 0 0 chr4 94239445 94239490 -108088857 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr4 94239972 94239993 -108088354 + AT_rich Low_complexity Low_complexity 1 21 0 319 261 11 0 chr4 94241018 94241110 -108087237 + MER103 DNA DNA 3 95 -71 321 26 0 0 chr4 94241240 94241278 -108087069 + (CA)n Simple_repeat Simple_repeat 1 38 0 476 299 15 0 chr4 94241861 94241998 -108086349 - MIR SINE MIR -121 141 3 23 78 0 0 chr4 94242706 94242757 -108085590 + AT_rich Low_complexity Low_complexity 1 51 0 360 320 63 11 chr4 94243376 94243415 -108084932 - MIR SINE MIR -10 252 216 2248 89 0 7 chr4 94243415 94243738 -108084609 + AluY SINE Alu 1 321 0 360 320 63 11 chr4 94243738 94243872 -108084475 - MIR SINE MIR -46 216 69 3350 214 33 5 chr4 94244034 94244785 -108083562 - Tigger6a DNA MER2_type -308 775 4 1882 154 3 22 chr4 94244977 94245334 -108083013 + L1MA5 LINE L1 5951 6300 0 418 163 12 0 chr4 94245335 94245415 -108082932 + L1MA9 LINE L1 5594 5674 -630 368 186 0 0 chr4 94245433 94245492 -108082855 + AluJo SINE Alu 8 66 -236 * 1014 171 53 18 chr4 94245486 94245714 -108082633 - Tigger6 DNA MER2_type -154 1443 1208 1412 165 9 4 chr4 94245715 94245945 -108082402 + AluJo SINE Alu 73 303 -9 1714 228 54 36 chr4 94245945 94246503 -108081844 + L1MA9 LINE L1 5715 6282 -30 2171 114 3 19 chr4 94246522 94246830 -108081517 + AluSg SINE Alu 1 303 -7 27 0 0 0 chr4 94246855 94246882 -108081465 + AT_rich Low_complexity Low_complexity 1 27 0 327 305 37 53 chr4 94247913 94248088 -108080259 - MIR SINE MIR -78 184 11 701 250 91 14 chr4 94248088 94248227 -108080120 + MER58A DNA MER1_type 1 163 -2257 1840 148 0 20 chr4 94248227 94248532 -108079815 - AluJb SINE Alu -13 299 1 701 250 91 14 chr4 94248532 94248600 -108079747 + MER58A DNA MER1_type 163 224 0 327 305 37 53 chr4 94248600 94248611 -108079736 - MIR SINE MIR -251 11 1 938 158 0 35 chr4 94249048 94249219 -108079128 + FRAM SINE Alu 8 172 -4 23 0 0 0 chr4 94251546 94251569 -108076778 + AT_rich Low_complexity Low_complexity 1 23 0 234 105 0 0 chr4 94251918 94251956 -108076391 + (TCC)n Simple_repeat Simple_repeat 2 39 0 22 35 0 0 chr4 94253167 94253196 -108075151 + AT_rich Low_complexity Low_complexity 1 29 0 192 300 118 9 chr4 94253506 94253616 -108074731 + MIR3 SINE MIR 46 167 -41 463 241 34 79 chr4 94253627 94253892 -108074455 - L1MC5 LINE L1 -36 7925 7673 493 258 26 13 chr4 94253897 94254048 -108074299 - L1ME2 LINE L1 0 6164 6012 475 221 21 43 chr4 94254054 94254194 -108074153 - L1ME2 LINE L1 -220 5944 5808 303 262 49 23 chr4 94254504 94254639 -108073708 - MIR SINE MIR -61 201 59 430 277 87 5 chr4 94256221 94256405 -108071942 + MIR SINE MIR 64 262 0 2183 132 0 0 chr4 94257228 94257539 -108070808 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr4 94257758 94257790 -108070557 + AT_rich Low_complexity Low_complexity 1 32 0 183 305 51 0 chr4 94258094 94258153 -108070194 + L3b LINE CR1 1357 1418 -165 415 208 62 0 chr4 94258861 94258957 -108069390 + L1ME LINE L1 5560 5661 -460 1637 154 23 0 chr4 94260200 94260460 -108067887 + MLT1B LTR MaLR 125 390 0 24 0 0 0 chr4 94260505 94260529 -108067818 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr4 94260777 94260799 -108067548 + (TG)n Simple_repeat Simple_repeat 2 23 0 366 23 0 0 chr4 94260813 94260856 -108067491 + (GA)n Simple_repeat Simple_repeat 2 44 0 1350 177 99 8 chr4 94262119 94262555 -108065792 - LTR54 LTR ERV1 -2 496 1 1673 194 0 10 chr4 94262848 94263157 -108065190 + AluJb SINE Alu 1 306 -6 28 29 0 0 chr4 94263362 94263397 -108064950 + AT_rich Low_complexity Low_complexity 1 35 0 684 291 197 26 chr4 94263730 94264026 -108064321 + LTR50 LTR ERVL 1 245 -550 2179 122 33 22 chr4 94264026 94264386 -108063961 - THE1B LTR MaLR 0 364 1 11289 99 6 6 chr4 94264386 94265966 -108062381 - THE1B-int LTR MaLR 0 1580 1 2410 96 19 30 chr4 94265966 94266332 -108062015 - THE1B LTR MaLR 0 364 3 684 291 197 26 chr4 94266332 94266500 -108061847 + LTR50 LTR ERVL 244 547 -248 274 319 57 21 chr4 94266521 94266662 -108061685 + LTR50 LTR ERVL 502 647 -148 2151 107 3 7 chr4 94267940 94268240 -108060107 - AluSp SINE Alu -14 299 1 2268 165 28 25 chr4 94269203 94269634 -108058713 - MSTB1 LTR MaLR 0 432 1 1262 221 42 80 chr4 94270325 94270751 -108057596 + MER47B DNA MER2_type 9 418 0 6467 131 4 0 chr4 94270887 94271858 -108056489 + L1P LINE L1 1 975 -5171 7191 52 1 0 chr4 94271858 94273260 -108055087 + L1PA5 LINE L1 4742 6146 -8 26 30 0 0 chr4 94273350 94273383 -108054964 + AT_rich Low_complexity Low_complexity 1 33 0 385 272 15 37 chr4 94273592 94273728 -108054619 + MER94 DNA DNA 2 134 0 303 254 0 0 chr4 94274387 94274458 -108053889 + L1MCa LINE L1 1994 2064 -4362 205 298 18 0 chr4 94274543 94274600 -108053747 + L2 LINE L2 3206 3263 -9 197 268 0 18 chr4 94274715 94274771 -108053576 - L2 LINE L2 -289 2983 2929 484 198 0 10 chr4 94275295 94275391 -108052956 - MER5A DNA MER1_type -94 95 1 22 56 0 0 chr4 94275445 94275481 -108052866 + AT_rich Low_complexity Low_complexity 1 36 0 22 94 0 0 chr4 94275493 94275557 -108052790 + AT_rich Low_complexity Low_complexity 1 64 0 205 77 51 26 chr4 94275759 94275798 -108052549 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 2461 130 104 9 chr4 94276673 94277105 -108051242 - MER101 LTR ERV1 0 474 2 415 281 65 7 chr4 94278766 94278905 -108049442 - L1MD3 LINE L1 -9 7986 7840 297 0 0 0 chr4 94279581 94279614 -108048733 + (GA)n Simple_repeat Simple_repeat 1 33 0 1112 268 53 43 chr4 94279727 94280142 -108048205 + MLT1J LTR MaLR 85 503 -8 923 70 78 0 chr4 94280391 94280520 -108047827 + MER30 DNA MER1_type 1 139 -91 6812 62 19 0 chr4 94280591 94281262 -108047085 - L1PA7 LINE L1 -1 6153 5496 2199 88 0 26 chr4 94281262 94281568 -108046779 - AluY SINE Alu -13 298 1 6812 62 19 0 chr4 94281568 94282411 -108045936 - L1PA7 LINE L1 -658 5496 4634 449 74 333 0 chr4 94282412 94282493 -108045854 + MER30 DNA MER1_type 123 230 0 21 36 0 0 chr4 94284503 94284531 -108043816 + AT_rich Low_complexity Low_complexity 1 28 0 425 76 0 15 chr4 94284645 94284711 -108043636 + LTR1 LTR ERV1 721 785 0 1792 246 23 19 chr4 94285239 94285840 -108042507 + L1MCa LINE L1 2177 2738 -3688 1941 231 49 8 chr4 94285840 94286352 -108041995 - MLT1E3 LTR MaLR 0 624 6 1299 235 34 8 chr4 94286358 94286715 -108041632 + L1MCa LINE L1 2735 3100 -3326 233 233 0 133 chr4 94286728 94286818 -108041529 - MER63 DNA MER1_type -307 754 677 345 115 4 21 chr4 94287364 94287432 -108040915 - AluS SINE Alu -210 92 44 659 283 22 98 chr4 94287964 94288075 -108040272 - L2 LINE L2 -56 3257 3139 1438 143 154 0 chr4 94288075 94288334 -108040013 + AluSx SINE Alu 1 299 -3 659 283 22 98 chr4 94288334 94288589 -108039758 - L2 LINE L2 -174 3139 2919 493 291 121 22 chr4 94288711 94289034 -108039313 - L1MC5 LINE L1 -53 7908 7554 27 49 0 0 chr4 94289100 94289141 -108039206 + AT_rich Low_complexity Low_complexity 1 41 0 235 364 140 7 chr4 94290514 94290657 -108037690 - MIR SINE MIR -5 257 96 488 323 154 37 chr4 94291053 94291616 -108036731 - L2 LINE L2 -3 3310 2682 2082 118 0 3 chr4 94291661 94291957 -108036390 + AluSq SINE Alu 1 295 -18 229 255 157 20 chr4 94292005 94292107 -108036240 - L2 LINE L2 -3 3310 3195 198 113 38 19 chr4 94292370 94292423 -108035924 + (TA)n Simple_repeat Simple_repeat 1 54 0 40 59 0 0 chr4 94292645 94292713 -108035634 + AT_rich Low_complexity Low_complexity 1 68 0 216 271 129 12 chr4 94293451 94293536 -108034811 - L2 LINE L2 -8 3264 3170 202 261 87 43 chr4 94294511 94294603 -108033744 + L3 LINE CR1 367 462 -1115 330 358 121 14 chr4 94294956 94295163 -108033184 + MIR SINE MIR 16 244 -18 199 287 43 32 chr4 94295531 94295625 -108032722 - MIR SINE MIR -70 138 44 25 51 0 0 chr4 94296315 94296354 -108031993 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr4 94297054 94297076 -108031271 + AT_rich Low_complexity Low_complexity 1 22 0 3992 264 62 47 chr4 94297505 94299342 -108029005 - L1ME2 LINE L1 -3 6397 4490 954 189 0 6 chr4 94299342 94299517 -108028830 - FAM SINE Alu -1 174 1 3992 264 62 47 chr4 94299517 94300763 -108027584 - L1ME2 LINE L1 -1910 4490 3264 22 0 0 0 chr4 94300763 94300785 -108027562 + AT_rich Low_complexity Low_complexity 1 22 0 788 174 0 21 chr4 94300803 94300947 -108027400 - FLAM_C SINE Alu -2 141 1 1333 256 62 0 chr4 94300990 94301459 -108026888 - L1ME2 LINE L1 -3174 3208 2711 2079 163 8 5 chr4 94301470 94301868 -108026479 - L1MA4 LINE L1 0 6300 5902 2370 127 26 0 chr4 94301884 94302269 -108026078 + L1 LINE L1 4465 4859 -1287 495 268 14 33 chr4 94302425 94302638 -108025709 - L1ME2 LINE L1 -4329 2234 2026 23 33 0 0 chr4 94302638 94302668 -108025679 + AT_rich Low_complexity Low_complexity 1 30 0 306 312 28 9 chr4 94302692 94302801 -108025546 - L1ME2 LINE L1 -5093 1291 1181 725 306 32 23 chr4 94302863 94303209 -108025138 - L1MDb LINE L1 -4583 2539 2191 558 270 70 16 chr4 94303228 94303879 -108024468 - L1MDb LINE L1 -4887 1536 1178 2530 197 28 6 chr4 94304050 94304558 -108023789 + LTR53 LTR ERVL 1 519 0 1803 223 50 53 chr4 94304836 94305360 -108022987 - L1MDb LINE L1 -6001 940 419 195 274 59 0 chr4 94306129 94306180 -108022167 - L2 LINE L2 -1 3271 3218 * 337 311 83 0 chr4 94306175 94306307 -108022040 + MIR SINE MIR 49 191 -71 181 344 104 10 chr4 94308444 94308540 -108019807 + L2 LINE L2 3168 3272 0 234 91 0 0 chr4 94308542 94308575 -108019772 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 351 309 42 79 chr4 94310802 94311018 -108017329 + MIR SINE MIR 42 247 -15 21 36 0 0 chr4 94311087 94311115 -108017232 + AT_rich Low_complexity Low_complexity 1 28 0 184 269 0 60 chr4 94311436 94311503 -108016844 - L2 LINE L2 -29 3243 3181 2310 89 0 3 chr4 94311971 94312264 -108016083 - AluSc SINE Alu -17 292 1 268 286 22 22 chr4 94312471 94312562 -108015785 - L2 LINE L2 -8 3305 3215 570 305 109 21 chr4 94312962 94313201 -108015146 - MIR SINE MIR 0 262 3 211 296 19 0 chr4 94313663 94313717 -108014630 + L2 LINE L2 3203 3257 -15 450 300 15 8 chr4 94314099 94314229 -108014118 - L2 LINE L2 0 3272 3142 391 335 219 4 chr4 94314438 94314707 -108013640 + L2 LINE L2 2393 2719 -595 314 206 273 0 chr4 94314709 94314903 -108013444 - HsTC2 DNA Tc2 0 1898 1652 * 357 212 81 71 chr4 94314902 94315001 -108013346 - HsTC2 DNA Tc2 -1764 134 35 922 308 82 17 chr4 94315048 94315463 -108012884 + L2 LINE L2 2864 3305 -8 752 296 96 12 chr4 94315473 94315808 -108012539 - L2 LINE L2 -1029 2285 1923 25 31 0 0 chr4 94316642 94316674 -108011673 + AT_rich Low_complexity Low_complexity 1 32 0 1707 20 0 0 chr4 94316896 94317095 -108011252 + L1PA2 LINE L1 5956 6154 -1 26 30 0 0 chr4 94317576 94317609 -108010738 + AT_rich Low_complexity Low_complexity 1 33 0 396 281 144 19 chr4 94318383 94318543 -108009804 - MIR SINE MIR -50 212 33 203 286 24 24 chr4 94318849 94318933 -108009414 + CT-rich Low_complexity Low_complexity 2 85 0 2183 166 100 3 chr4 94319022 94319382 -108008965 - L1MB3 LINE L1 -3 6180 5772 228 86 0 0 chr4 94319382 94319417 -108008930 + (TG)n Simple_repeat Simple_repeat 1 35 0 2183 166 100 3 chr4 94319417 94319499 -108008848 - L1MB3 LINE L1 -411 5772 5699 21 36 0 0 chr4 94321439 94321467 -108006880 + AT_rich Low_complexity Low_complexity 1 28 0 276 27 27 0 chr4 94322125 94322162 -108006185 - L1MA7 LINE L1 -71 6220 6183 430 244 219 11 chr4 94322165 94322521 -108005826 - L1MEc LINE L1 -4946 1450 1021 322 244 35 107 chr4 94322527 94322724 -108005623 - L1MEc LINE L1 -5316 889 707 414 365 77 20 chr4 94322737 94323129 -108005218 - L1MEc LINE L1 -5965 431 18 279 275 143 29 chr4 94323200 94323444 -108004903 - L1 LINE L1 -1558 4588 4317 400 323 8 0 chr4 94324291 94324415 -108003932 + MIR SINE MIR 137 261 -1 518 311 31 0 chr4 94325728 94325889 -108002458 + MIR SINE MIR 39 204 -58 195 100 0 0 chr4 94326118 94326148 -108002199 + (TC)n Simple_repeat Simple_repeat 1 30 0 21 36 0 0 chr4 94327794 94327822 -108000525 + AT_rich Low_complexity Low_complexity 1 28 0 225 65 0 0 chr4 94331850 94331881 -107996466 + (TG)n Simple_repeat Simple_repeat 1 31 0 24 67 0 0 chr4 94332905 94332950 -107995397 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr4 94333249 94333272 -107995075 + AT_rich Low_complexity Low_complexity 1 23 0 208 265 0 9 chr4 94333279 94333350 -107994997 + CT-rich Low_complexity Low_complexity 1 70 0 35 63 0 0 chr4 94333931 94333994 -107994353 + AT_rich Low_complexity Low_complexity 1 63 0 32 26 0 0 chr4 94334314 94334353 -107993994 + AT_rich Low_complexity Low_complexity 1 39 0 186 302 0 0 chr4 94335523 94335566 -107992781 - MER5B DNA MER1_type -5 173 131 468 289 10 0 chr4 94336047 94336151 -107992196 - MER5A DNA MER1_type -84 105 1 2012 120 7 13 chr4 94336830 94336858 -107991489 - AluSx SINE Alu -6 306 279 252 0 0 0 chr4 94336858 94336886 -107991461 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 2012 120 7 13 chr4 94336886 94337165 -107991182 - AluSx SINE Alu -33 279 1 48 46 0 11 chr4 94339271 94339322 -107989025 + AT_rich Low_complexity Low_complexity 1 52 -34 2007 124 7 3 chr4 94339322 94339612 -107988735 + AluSc SINE Alu 1 291 -18 48 46 0 11 chr4 94339612 94339647 -107988700 + AT_rich Low_complexity Low_complexity 52 86 0 1553 93 68 8 chr4 94339648 94339896 -107988451 - L1MA2 LINE L1 0 6304 6042 198 0 0 0 chr4 94339896 94339918 -107988429 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1401 169 29 43 chr4 94339921 94340200 -107988147 - AluJb SINE Alu -30 282 8 64 14 0 0 chr4 94340229 94340300 -107988047 + AT_rich Low_complexity Low_complexity 1 71 0 1535 121 0 0 chr4 94340309 94340524 -107987823 + AluSc SINE Alu 1 215 -94 6685 157 24 8 chr4 94340524 94342509 -107985838 - L1MA2 LINE L1 -271 6033 4017 27 29 0 0 chr4 94343205 94343239 -107985108 + AT_rich Low_complexity Low_complexity 1 34 0 953 213 152 22 chr4 94343289 94343696 -107984651 - MLT1D LTR MaLR -157 469 1 2460 124 6 6 chr4 94346281 94346645 -107981702 - THE1B LTR MaLR 0 364 1 9781 120 39 30 chr4 94346645 94348205 -107980142 - THE1B-int LTR MaLR 0 1580 7 2211 128 28 14 chr4 94348228 94348587 -107979760 - THE1B LTR MaLR 0 364 1 22 35 0 0 chr4 94349000 94349029 -107979318 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 94349406 94349435 -107978912 + AT_rich Low_complexity Low_complexity 1 29 0 202 319 0 0 chr4 94351924 94351971 -107976376 + L2 LINE L2 3261 3307 -6 366 306 58 52 chr4 94352263 94352436 -107975911 + MIR3 SINE MIR 3 176 -32 353 39 20 0 chr4 94353238 94353289 -107975058 + (TA)n Simple_repeat Simple_repeat 2 53 0 618 272 103 22 chr4 94354213 94354437 -107973910 - MIR SINE MIR -13 249 8 403 325 88 6 chr4 94355320 94355480 -107972867 + MIR SINE MIR 15 187 -75 1736 256 44 40 chr4 94356004 94356531 -107971816 - MER68 LTR ERV1 -31 531 3 1981 122 28 0 chr4 94358469 94358756 -107969591 + AluSx SINE Alu 1 295 -17 587 276 82 16 chr4 94358910 94359153 -107969194 - L1ME LINE L1 -345 5776 5518 25 0 0 0 chr4 94359218 94359243 -107969104 + AT_rich Low_complexity Low_complexity 1 25 0 249 208 0 0 chr4 94359276 94359329 -107969018 - L1ME LINE L1 -760 5482 5430 2516 250 80 15 chr4 94359622 94360390 -107967957 - L1ME1 LINE L1 -9 6157 5350 201 261 11 33 chr4 94361175 94361267 -107967080 + A-rich Low_complexity Low_complexity 3 92 0 227 315 89 41 chr4 94361291 94361437 -107966910 - L2 LINE L2 0 3313 3161 2095 132 7 0 chr4 94361765 94362069 -107966278 + AluSx SINE Alu 3 308 -4 255 287 59 52 chr4 94362200 94362336 -107966011 - L2 LINE L2 0 3272 3136 432 329 119 74 chr4 94362576 94362611 -107965736 + L3 LINE CR1 488 520 -1057 2312 103 3 0 chr4 94362611 94362913 -107965434 - AluSx SINE Alu -9 303 1 432 329 119 74 chr4 94362913 94363458 -107964889 + L3 LINE CR1 520 1094 -483 491 306 68 44 chr4 94364933 94365361 -107962986 - L1ME4a LINE L1 -296 5825 5388 29 0 0 0 chr4 94365472 94365501 -107962846 + AT_rich Low_complexity Low_complexity 1 29 0 755 168 0 0 chr4 94365501 94365620 -107962727 - FLAM_C SINE Alu -14 119 1 305 296 210 35 chr4 94365660 94365816 -107962531 - L1ME4a LINE L1 -865 5281 5154 231 88 0 0 chr4 94365816 94365850 -107962497 + (CTTTG)n Simple_repeat Simple_repeat 1 34 0 305 296 210 35 chr4 94365850 94366098 -107962249 - L1ME4a LINE L1 -992 5154 4806 208 256 0 110 chr4 94367494 94367576 -107960771 - MIR SINE MIR -93 169 97 543 254 129 22 chr4 94368959 94369186 -107959161 - MIR SINE MIR -2 260 19 332 225 45 0 chr4 94369201 94369290 -107959057 - L1ME LINE L1 -334 5787 5695 25 0 0 0 chr4 94369351 94369376 -107958971 + AT_rich Low_complexity Low_complexity 1 25 0 260 250 28 148 chr4 94369388 94369564 -107958783 - MIR SINE MIR -49 213 59 545 260 7 7 chr4 94369745 94369891 -107958456 + L1ME LINE L1 5657 5802 -364 271 349 59 20 chr4 94369931 94370083 -107958264 - LTR16A LTR ERVL -145 305 148 1877 161 135 5 chr4 94370106 94370485 -107957862 - MSTA LTR MaLR 0 428 1 25 51 0 0 chr4 94370575 94370614 -107957733 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr4 94370829 94370865 -107957482 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr4 94371278 94371315 -107957032 + AT_rich Low_complexity Low_complexity 1 37 0 995 181 15 49 chr4 94372256 94372461 -107955886 - MLT1A1 LTR MaLR -6 359 162 810 148 29 115 chr4 94372498 94372707 -107955640 - MLT1A1 LTR MaLR -183 191 1 741 167 8 8 chr4 94374652 94374778 -107953569 + MER49 LTR ERV1 10 135 -788 1863 192 107 111 chr4 94374778 94375607 -107952740 - LTR1B LTR ERV1 0 826 1 4386 136 45 31 chr4 94375607 94376387 -107951960 + MER49 LTR ERV1 132 922 -1 21 57 0 0 chr4 94376584 94376619 -107951728 + AT_rich Low_complexity Low_complexity 1 35 0 222 271 0 0 chr4 94376766 94376851 -107951496 + GA-rich Low_complexity Low_complexity 3 87 0 2047 125 48 6 chr4 94376864 94377200 -107951147 - Tigger2 DNA MER2_type -37 2681 2332 679 178 0 0 chr4 94377220 94377338 -107951009 + AluJb SINE Alu 1 118 -194 411 148 0 3 chr4 94377354 94377423 -107950924 - Tigger2 DNA MER2_type -2656 62 1 4779 91 7 10 chr4 94377725 94378409 -107949938 + L1PA11 LINE L1 5490 6171 -3 4474 74 88 19 chr4 94378435 94378600 -107949747 - LTR8 LTR ERV1 0 691 539 2248 86 10 13 chr4 94378600 94378901 -107949446 - AluSc SINE Alu -9 300 1 4474 74 88 19 chr4 94378901 94379381 -107948966 - LTR8 LTR ERV1 -152 539 1 2514 90 119 5 chr4 94379554 94379956 -107948391 - LTR7 LTR ERV1 -2 448 1 2289 103 47 16 chr4 94379956 94380336 -107948011 - HERVH LTR ERV1 0 7713 7322 1342 139 19 0 chr4 94380334 94380550 -107947797 - HERVH LTR ERV1 -1894 5819 5600 * 4323 148 5 1 chr4 94380551 94381221 -107947126 - HERVH LTR ERV1 -2564 5149 4478 3359 100 4 18 chr4 94381217 94381726 -107946621 - HERVH LTR ERV1 -3720 3993 3492 * 881 132 21 0 chr4 94381749 94381893 -107946454 - HERVH LTR ERV1 -4427 3286 3140 * 20177 89 24 12 chr4 94381887 94384838 -107943509 - HERVH LTR ERV1 -4726 2987 1 1955 86 282 6 chr4 94384840 94385191 -107943156 - LTR7 LTR ERV1 -2 448 1 347 225 6 26 chr4 94386355 94386542 -107941805 + CT-rich Low_complexity Low_complexity 1 183 0 26 0 0 0 chr4 94387770 94387796 -107940551 + AT_rich Low_complexity Low_complexity 1 26 0 523 303 7 7 chr4 94388162 94388317 -107940030 + MIR SINE MIR 103 257 -5 619 279 88 37 chr4 94389241 94389376 -107938971 + MIR SINE MIR 9 160 -102 13765 136 19 43 chr4 94389376 94391852 -107936495 - Tigger1 DNA MER2_type -1 2417 1 619 279 88 37 chr4 94391852 94391931 -107936416 + MIR SINE MIR 160 234 -28 2108 140 3 0 chr4 94392731 94393053 -107935294 + MER49 LTR ERV1 1 323 -600 2857 133 2 13 chr4 94393059 94393525 -107934822 + LTR44 LTR ERV1 53 513 -6 243 302 0 0 chr4 94393716 94393779 -107934568 + MIR SINE MIR 172 234 -28 34 0 0 0 chr4 94393881 94393915 -107934432 + AT_rich Low_complexity Low_complexity 1 34 0 2069 108 3 35 chr4 94394225 94394541 -107933806 - AluSg SINE Alu -4 306 1 1677 128 50 137 chr4 94395791 94396214 -107932133 + MLT1B LTR MaLR 1 386 -4 220 219 47 31 chr4 94397489 94397553 -107930794 - MIR SINE MIR -93 169 105 438 307 24 22 chr4 94397886 94398219 -107930128 + L1ME LINE L1 5185 5526 -644 1712 167 0 42 chr4 94398253 94398400 -107929947 + AluJb SINE Alu 1 130 -182 377 23 0 0 chr4 94398400 94398443 -107929904 + (TA)n Simple_repeat Simple_repeat 1 43 0 1712 167 0 42 chr4 94398443 94398606 -107929741 + AluJb SINE Alu 130 298 -14 2313 97 7 0 chr4 94398970 94399278 -107929069 - AluSg SINE Alu 0 310 1 21 82 0 0 chr4 94399696 94399745 -107928602 + AT_rich Low_complexity Low_complexity 1 49 0 310 274 64 76 chr4 94399854 94399981 -107928366 + MIR3 SINE MIR 42 168 -40 1471 234 70 31 chr4 94399981 94400465 -107927882 + MLT1D LTR MaLR 1 503 -2 310 274 64 76 chr4 94400465 94400494 -107927853 + MIR3 SINE MIR 168 196 -12 1178 336 123 24 chr4 94400717 94401783 -107926564 + L2 LINE L2 2075 3242 -71 1630 275 157 31 chr4 94401854 94402735 -107925612 - HAL1 LINE L1 -170 2337 1346 7549 132 57 0 chr4 94402951 94404216 -107924131 - L1M1 LINE L1 -4525 3040 1704 2477 54 0 0 chr4 94404599 94404893 -107923454 - AluY SINE Alu -17 294 1 1182 275 59 48 chr4 94406334 94406681 -107921666 + LTR16A LTR ERVL 6 361 -89 1498 209 64 12 chr4 94406681 94407026 -107921321 + MLT1A1 LTR MaLR 1 363 -2 1182 275 59 48 chr4 94407026 94407118 -107921229 + LTR16A LTR ERVL 361 450 0 1639 213 123 20 chr4 94407785 94408240 -107920107 + MER34 LTR ERV1 41 542 0 26 0 0 0 chr4 94408523 94408549 -107919798 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 94408682 94408703 -107919644 + AT_rich Low_complexity Low_complexity 1 21 0 204 320 157 66 chr4 94408751 94408948 -107919399 - L2 LINE L2 -9 3263 3049 327 113 0 0 chr4 94409133 94409186 -107919161 + (TG)n Simple_repeat Simple_repeat 2 54 0 3345 127 37 4 chr4 94409201 94409745 -107918602 - MER34B LTR ERV1 -3 562 1 193 330 57 38 chr4 94409751 94409857 -107918490 - L2 LINE L2 -471 2843 2736 753 113 61 0 chr4 94410093 94410208 -107918139 + AluJb SINE Alu 162 283 -29 261 0 0 0 chr4 94414312 94414341 -107914006 + (CA)n Simple_repeat Simple_repeat 2 30 0 2066 129 3 0 chr4 94415075 94415370 -107912977 - AluSg SINE Alu -14 296 1 1777 154 39 0 chr4 94415381 94415660 -107912687 - AluY SINE Alu -21 290 1 258 133 0 67 chr4 94416125 94416200 -107912147 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 25 31 0 0 chr4 94418947 94418979 -107909368 + AT_rich Low_complexity Low_complexity 1 32 0 216 333 0 0 chr4 94419604 94419664 -107908683 + L2 LINE L2 2594 2653 -661 963 292 95 43 chr4 94419977 94420077 -107908270 - L2 LINE L2 -1 3312 3219 2575 0 0 0 chr4 94420077 94420352 -107907995 + AluYa5 SINE Alu 37 311 0 963 292 95 43 chr4 94420352 94420811 -107907536 - L2 LINE L2 -94 3219 2746 624 342 33 23 chr4 94420946 94421247 -107907100 + L2 LINE L2 2974 3277 -36 465 150 30 80 chr4 94421337 94421437 -107906910 + MLT1A2 LTR MaLR 2 96 -278 229 270 16 0 chr4 94421437 94421500 -107906847 - MLT1H LTR MaLR -227 322 259 26 0 0 0 chr4 94421857 94421883 -107906464 + AT_rich Low_complexity Low_complexity 1 26 0 335 319 65 0 chr4 94421925 94422063 -107906284 - MIR SINE MIR -30 232 86 1105 181 5 0 chr4 94422155 94422354 -107905993 + L1PB1 LINE L1 1 200 -6663 14406 150 58 9 chr4 94422362 94426100 -107902247 + L1PB1 LINE L1 633 4189 -2678 1831 164 11 0 chr4 94426100 94426374 -107901973 + AluSx SINE Alu 1 277 -35 291 71 0 0 chr4 94426378 94426420 -107901927 + (CAA)n Simple_repeat Simple_repeat 1 42 0 14406 150 58 9 chr4 94426420 94428070 -107900277 + L1PB1 LINE L1 4191 6341 -526 2190 108 0 3 chr4 94428070 94428366 -107899981 + AluSx SINE Alu 1 295 -17 14406 150 58 9 chr4 94428366 94428860 -107899487 + L1PB1 LINE L1 6341 6810 -57 24 32 0 0 chr4 94428871 94428902 -107899445 + AT_rich Low_complexity Low_complexity 1 31 0 690 247 139 3 chr4 94429236 94429429 -107898918 - MLT1D LTR MaLR -47 458 216 214 203 0 17 chr4 94429588 94429647 -107898700 + A-rich Low_complexity Low_complexity 1 58 0 685 327 110 34 chr4 94430004 94430504 -107897843 - L2 LINE L2 -4 3309 2777 2155 124 0 3 chr4 94430643 94430942 -107897405 - AluSx SINE Alu -14 298 1 316 354 15 8 chr4 94431003 94431133 -107897214 + L2 LINE L2 3179 3309 -4 1991 157 15 33 chr4 94431369 94431764 -107896583 + MLT1B LTR MaLR 1 388 -2 487 162 0 0 chr4 94431784 94431858 -107896489 + L1MCa LINE L1 19 92 -6334 * 3743 154 123 28 chr4 94431837 94433556 -107894791 + L1MCa LINE L1 701 2681 -3745 195 303 156 18 chr4 94433636 94433745 -107894602 - MIR3 SINE MIR -11 197 74 25 31 0 0 chr4 94433912 94433944 -107894403 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr4 94434729 94434758 -107893589 + AT_rich Low_complexity Low_complexity 1 29 0 26 58 0 29 chr4 94436031 94436072 -107892275 + AT_rich Low_complexity Low_complexity 1 41 -26 1748 147 27 7 chr4 94436072 94436364 -107891983 + AluSx SINE Alu 1 298 -14 26 58 0 29 chr4 94436364 94436391 -107891956 + AT_rich Low_complexity Low_complexity 41 67 0 22 35 0 0 chr4 94437731 94437760 -107890587 + AT_rich Low_complexity Low_complexity 1 29 0 228 342 51 8 chr4 94437922 94438039 -107890308 + MIR3 SINE MIR 47 168 -40 2130 165 35 31 chr4 94438136 94438683 -107889664 - MLT2A2 LTR ERVL 0 554 1 25 31 0 0 chr4 94439064 94439096 -107889251 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr4 94439243 94439263 -107889084 + (T)n Simple_repeat Simple_repeat 1 20 0 305 261 0 65 chr4 94439284 94439376 -107888971 + MIR3 SINE MIR 108 193 -15 220 401 21 14 chr4 94439412 94439554 -107888793 - L3 LINE CR1 -873 704 562 228 200 18 36 chr4 94442000 94442055 -107886292 + CT-rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr4 94442759 94442782 -107885565 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 94443975 94443997 -107884350 + AT_rich Low_complexity Low_complexity 1 22 0 639 302 23 0 chr4 94444333 94444505 -107883842 - MIR SINE MIR -16 246 71 22 35 0 0 chr4 94444733 94444762 -107883585 + AT_rich Low_complexity Low_complexity 1 29 0 561 224 204 7 chr4 94444965 94445112 -107883235 - MER45A DNA AcHobo -2 176 1 262 295 0 26 chr4 94445579 94445657 -107882690 + L3 LINE CR1 1500 1575 -2 319 328 0 48 chr4 94446292 94446417 -107881930 + MIR SINE MIR 19 137 -125 1974 188 20 0 chr4 94446481 94446837 -107881510 + MLT1A1 LTR MaLR 1 363 -2 625 239 44 6 chr4 94447078 94447237 -107881110 - MER58A DNA MER1_type -12 212 48 3796 194 70 16 chr4 94447310 94448128 -107880219 - MER21B LTR ERV1 -1 862 1 5065 79 16 3 chr4 94448436 94449135 -107879212 - L1P3 LINE L1 -1507 4639 3932 * 5244 83 10 2 chr4 94449120 94450187 -107878160 + L1P3 LINE L1 4620 5692 -462 375 287 17 29 chr4 94450757 94450931 -107877416 + GA-rich Low_complexity Low_complexity 3 174 0 21 36 0 0 chr4 94451733 94451761 -107876586 + AT_rich Low_complexity Low_complexity 1 28 0 4992 155 32 2 chr4 94452110 94452954 -107875393 - L1P LINE L1 -5240 906 38 384 301 38 54 chr4 94453055 94453241 -107875106 - MER57A LTR ERV1 -163 240 58 264 91 0 0 chr4 94453278 94453322 -107875025 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2280 80 7 0 chr4 94453324 94453612 -107874735 - AluY SINE Alu -21 290 1 22 88 0 0 chr4 94454124 94454181 -107874166 + AT_rich Low_complexity Low_complexity 1 57 0 253 209 31 0 chr4 94454375 94454538 -107873809 + (TA)n Simple_repeat Simple_repeat 2 169 0 368 172 41 0 chr4 94454576 94454745 -107873602 + (TA)n Simple_repeat Simple_repeat 1 176 0 2247 85 7 0 chr4 94454745 94455028 -107873319 - AluSc SINE Alu -24 285 1 21 0 0 0 chr4 94455348 94455369 -107872978 + AT_rich Low_complexity Low_complexity 1 21 0 942 292 163 5 chr4 94455418 94455853 -107872494 + L1MEc LINE L1 51 554 -5842 272 70 23 0 chr4 94456365 94456408 -107871939 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 4322 65 4 0 chr4 94457208 94457766 -107870581 + L1PA7 LINE L1 5595 6154 0 204 125 0 0 chr4 94459333 94459365 -107868982 + (CATA)n Simple_repeat Simple_repeat 2 33 0 217 204 0 0 chr4 94460180 94460224 -107868123 + MIR SINE MIR 218 261 -1 891 252 41 0 chr4 94460227 94460445 -107867902 - MIR SINE MIR -34 228 2 2287 120 0 0 chr4 94460596 94460905 -107867442 + AluSx SINE Alu 1 309 -3 37 0 0 0 chr4 94460925 94460962 -107867385 + AT_rich Low_complexity Low_complexity 1 37 0 3941 182 13 47 chr4 94461108 94461954 -107866393 - LTR1B LTR ERV1 -9 817 1 26 0 0 0 chr4 94462164 94462190 -107866157 + AT_rich Low_complexity Low_complexity 1 26 0 227 217 0 0 chr4 94462542 94462588 -107865759 - L2 LINE L2 -6 3307 3262 216 281 174 30 chr4 94463143 94463310 -107865037 + MIR SINE MIR 20 210 -52 21 36 0 0 chr4 94463377 94463405 -107864942 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 94464443 94464468 -107863879 + AT_rich Low_complexity Low_complexity 1 25 0 213 300 0 60 chr4 94465557 94465657 -107862690 + MIR SINE MIR 46 139 -123 751 236 0 0 chr4 94466771 94466932 -107861415 + FRAM SINE Alu 3 163 -3 23 0 0 0 chr4 94468286 94468309 -107860038 + AT_rich Low_complexity Low_complexity 1 23 0 201 210 0 65 chr4 94468580 94468642 -107859705 + A-rich Low_complexity Low_complexity 5 62 0 21 82 0 0 chr4 94468708 94468757 -107859590 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr4 94470359 94470387 -107857960 + AT_rich Low_complexity Low_complexity 1 28 0 343 296 40 56 chr4 94470517 94470695 -107857652 + MER20B DNA MER1_type 36 214 -5 815 259 5 5 chr4 94470911 94471100 -107857247 + MER5A DNA MER1_type 1 189 0 2470 21 0 0 chr4 94471360 94471642 -107856705 - AluYb8 SINE Alu -2 316 35 1445 253 133 30 chr4 94471642 94472208 -107856139 - MLT1E2 LTR MaLR -2 624 1 781 247 0 0 chr4 94473248 94473410 -107854937 - FRAM SINE Alu -4 162 1 23 0 0 0 chr4 94475110 94475133 -107853214 + AT_rich Low_complexity Low_complexity 1 23 0 208 246 0 35 chr4 94476076 94476133 -107852214 + CT-rich Low_complexity Low_complexity 4 58 0 1578 206 16 21 chr4 94476184 94476557 -107851790 + MLT1A2 LTR MaLR 4 374 0 213 39 0 0 chr4 94477219 94477245 -107851102 + (T)n Simple_repeat Simple_repeat 1 26 0 2444 50 17 0 chr4 94478459 94478758 -107849589 + AluY SINE Alu 1 304 -7 418 253 76 72 chr4 94478980 94479217 -107849130 - L2 LINE L2 0 3313 3076 194 343 14 0 chr4 94479379 94479452 -107848895 + L2 LINE L2 2625 2698 -616 1354 142 138 4 chr4 94479954 94480201 -107848146 + Ricksha DNA DNA 10 289 -2957 921 185 0 0 chr4 94480199 94480356 -107847991 + Ricksha DNA DNA 1821 1977 -1269 * 3485 162 12 30 chr4 94480361 94480602 -107847745 + Ricksha DNA DNA 2594 2838 -413 1469 168 52 25 chr4 94480602 94480888 -107847459 + AluJb SINE Alu 1 294 -18 3485 162 12 30 chr4 94480888 94481340 -107847007 + Ricksha DNA DNA 2838 3238 -13 24 103 0 0 chr4 94481562 94481649 -107846698 + AT_rich Low_complexity Low_complexity 1 87 0 29 70 0 0 chr4 94482959 94483016 -107845331 + AT_rich Low_complexity Low_complexity 1 57 0 537 272 174 28 chr4 94484410 94484767 -107843580 + MLT1I LTR MaLR 1 409 0 280 328 9 35 chr4 94484929 94485045 -107843302 - MIR SINE MIR -55 207 95 1843 161 0 7 chr4 94485659 94485964 -107842383 + AluJb SINE Alu 1 303 -9 24 0 0 0 chr4 94486008 94486032 -107842315 + AT_rich Low_complexity Low_complexity 1 24 0 198 71 0 0 chr4 94487520 94487548 -107840799 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 191 310 35 0 chr4 94487997 94488055 -107840292 + MIR SINE MIR 16 75 -133 1150 49 0 0 chr4 94488938 94489081 -107839266 + L1PA3 LINE L1 6013 6155 0 5999 100 17 3 chr4 94489529 94490572 -107837775 - L1PA13 LINE L1 -4 6159 5101 1157 82 7 0 chr4 94490574 94490721 -107837626 - AluSp SINE Alu -164 149 2 1324 115 9 42 chr4 94490721 94490938 -107837409 + THE1B LTR MaLR 155 364 0 473 283 141 27 chr4 94491806 94491990 -107836357 - MIR SINE MIR 0 262 58 2268 92 0 3 chr4 94494617 94494911 -107833436 + AluSg SINE Alu 1 293 -17 34 24 0 0 chr4 94494911 94494952 -107833395 + AT_rich Low_complexity Low_complexity 1 41 0 29 47 0 0 chr4 94495580 94495623 -107832724 + AT_rich Low_complexity Low_complexity 1 43 0 1572 133 76 13 chr4 94495693 94495995 -107832352 - L1MC2 LINE L1 -12 6332 6012 2130 108 0 0 chr4 94497455 94497742 -107830605 + AluSx SINE Alu 1 287 -25 181 390 0 0 chr4 94498043 94498102 -107830245 + L2 LINE L2 3205 3263 -9 1248 237 134 26 chr4 94498169 94498595 -107829752 - MLT1E1 LTR MaLR -46 608 137 21 36 0 0 chr4 94499956 94499984 -107828363 + AT_rich Low_complexity Low_complexity 1 28 0 211 336 121 9 chr4 94500260 94500376 -107827971 - MIR SINE MIR -109 153 25 344 281 110 70 chr4 94500572 94500800 -107827547 + L2 LINE L2 3076 3312 -1 367 356 81 30 chr4 94501094 94501527 -107826820 - L2 LINE L2 -490 2824 2370 651 274 16 0 chr4 94503763 94503949 -107824398 - MER5A DNA MER1_type 0 189 1 301 338 55 28 chr4 94503983 94504128 -107824219 + L2 LINE L2 1560 1708 -1606 277 294 119 40 chr4 94504444 94504570 -107823777 + MIR SINE MIR 49 184 -78 2149 115 13 0 chr4 94504903 94505208 -107823139 + AluSq SINE Alu 1 309 -4 2191 305 58 59 chr4 94505372 94506863 -107821484 - HERV16 LTR ERVL -1906 3090 1894 1195 287 45 10 chr4 94506863 94507264 -107821083 - LTR16A LTR ERVL -29 421 7 2715 165 52 14 chr4 94507425 94507983 -107820364 - L1MB4 LINE L1 -6 6174 5596 454 273 38 62 chr4 94508176 94508385 -107819962 - MIR SINE MIR -56 206 3 192 125 0 0 chr4 94508519 94508551 -107819796 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 21 36 0 0 chr4 94508571 94508599 -107819748 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr4 94508920 94508951 -107819396 + AT_rich Low_complexity Low_complexity 1 31 0 252 305 47 0 chr4 94509728 94509856 -107818491 - MER103 DNA DNA -7 159 26 21 36 0 0 chr4 94510473 94510501 -107817846 + AT_rich Low_complexity Low_complexity 1 28 0 4803 78 3 0 chr4 94510503 94511131 -107817216 - L1PA10 LINE L1 -9 6159 5530 401 324 71 22 chr4 94512185 94512367 -107815980 + MIR SINE MIR 28 218 -44 261 348 152 0 chr4 94512428 94512520 -107815827 - L2 LINE L2 -46 3226 3121 4098 160 52 44 chr4 94513142 94513366 -107814981 - L1MB4 LINE L1 -6 6174 5953 2615 149 12 2 chr4 94513366 94513789 -107814558 - MSTA LTR MaLR -1 427 1 4098 160 52 44 chr4 94513789 94514649 -107813698 - L1MB4 LINE L1 -227 5953 5080 26 0 0 0 chr4 94515890 94515916 -107812431 + AT_rich Low_complexity Low_complexity 1 26 0 213 250 0 0 chr4 94518236 94518296 -107810051 + (TA)n Simple_repeat Simple_repeat 1 60 0 2089 207 45 24 chr4 94518304 94518773 -107809574 - MLT2B1 LTR ERVL -41 479 1 301 301 50 92 chr4 94518775 94519057 -107809290 - L2 LINE L2 -33 3280 3011 1065 202 50 101 chr4 94519064 94519440 -107808907 - MLT1A1 LTR MaLR -8 357 1 700 254 197 29 chr4 94519442 94519788 -107808559 - L2 LINE L2 -299 3014 2611 226 407 44 0 chr4 94520031 94520166 -107808181 - L2 LINE L2 -9 3263 3123 654 147 0 17 chr4 94520362 94520478 -107807869 + MLT2B3 LTR ERVL 1 114 -440 192 211 0 0 chr4 94521176 94521214 -107807133 - L2 LINE L2 -3 3310 3273 191 319 96 21 chr4 94521271 94521365 -107806982 - L2 LINE L2 -186 3086 2986 530 323 105 73 chr4 94521451 94521576 -107806771 - L2 LINE L2 -338 2976 2856 1986 177 60 133 chr4 94521576 94522360 -107805987 - LTR8A LTR ERV1 0 727 1 530 323 105 73 chr4 94522360 94522956 -107805391 - L2 LINE L2 -458 2856 2232 379 182 0 0 chr4 94523160 94523226 -107805121 + MIR SINE MIR 185 250 -12 676 176 8 30 chr4 94523337 94523468 -107804879 - AluJb SINE Alu -180 132 5 21 0 0 0 chr4 94523551 94523572 -107804775 + AT_rich Low_complexity Low_complexity 1 21 0 624 305 110 8 chr4 94524718 94524954 -107803393 + MIR SINE MIR 3 262 0 193 276 158 0 chr4 94528171 94528247 -107800100 + MIR SINE MIR 100 187 -75 26 0 0 0 chr4 94528518 94528544 -107799803 + AT_rich Low_complexity Low_complexity 1 26 0 279 0 0 0 chr4 94529615 94529646 -107798701 + (TG)n Simple_repeat Simple_repeat 2 32 0 2096 139 0 7 chr4 94530241 94530542 -107797805 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr4 94530542 94530565 -107797782 + AT_rich Low_complexity Low_complexity 1 23 0 422 308 105 71 chr4 94530682 94530856 -107797491 + L2 LINE L2 2852 3019 -294 1972 172 69 15 chr4 94530856 94531262 -107797085 + MSTA LTR MaLR 1 428 0 422 308 105 71 chr4 94531262 94531526 -107796821 + L2 LINE L2 3019 3305 -8 581 260 68 11 chr4 94531747 94531924 -107796423 - MIR SINE MIR 0 262 76 220 276 23 23 chr4 94532623 94532710 -107795637 + GA-rich Low_complexity Low_complexity 3 89 0 24 0 0 0 chr4 94534294 94534318 -107794029 + AT_rich Low_complexity Low_complexity 1 24 0 1354 211 11 7 chr4 94534754 94535039 -107793308 + AluJo SINE Alu 1 286 -26 1502 194 46 7 chr4 94535142 94535478 -107792869 + MLT2B2 LTR ERVL 1 366 -48 197 224 26 9 chr4 94535503 94535619 -107792728 + (TA)n Simple_repeat Simple_repeat 2 119 0 1146 115 0 0 chr4 94535649 94535823 -107792524 + (TA)n Simple_repeat Simple_repeat 1 174 0 6860 126 53 23 chr4 94535823 94537018 -107791329 - Tigger3b DNA MER2_type 0 1231 2 8401 166 36 19 chr4 94537038 94538529 -107789818 + ERVL LTR ERVL 3670 5186 -578 1324 187 256 69 chr4 94538529 94538959 -107789388 + MLT2B1 LTR ERVL 23 537 -17 688 255 93 60 chr4 94539248 94539601 -107788746 - L2 LINE L2 -6 3307 2943 2604 280 65 7 chr4 94539621 94540396 -107787951 - L2 LINE L2 -517 2797 1978 187 288 50 0 chr4 94540422 94540502 -107787845 + L2 LINE L2 2458 2541 -773 917 315 94 32 chr4 94540506 94541121 -107787226 - MLT2F LTR ERVL -6 657 5 1050 212 162 50 chr4 94541832 94542384 -107785963 + MLT1E3 LTR MaLR 1 624 0 1482 285 45 10 chr4 94542421 94542818 -107785529 - MLT1G1 LTR MaLR -176 419 9 1506 179 19 8 chr4 94544234 94544497 -107783850 + Tigger7 DNA MER2_type 1 266 -467 213 39 0 0 chr4 94544497 94544523 -107783824 + (CA)n Simple_repeat Simple_repeat 1 26 0 201 175 0 0 chr4 94544524 94544564 -107783783 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 455 223 2 0 chr4 94544579 94544666 -107783681 + Tigger7 DNA MER2_type 2415 2487 0 830 115 0 0 chr4 94544758 94544871 -107783476 + AluJo SINE Alu 12 124 -188 23 0 0 0 chr4 94544872 94544895 -107783452 + AT_rich Low_complexity Low_complexity 1 23 0 291 393 43 0 chr4 94547412 94547552 -107780795 + MIR SINE MIR 26 171 -91 216 0 0 0 chr4 94548367 94548391 -107779956 + (CA)n Simple_repeat Simple_repeat 1 24 0 207 214 0 36 chr4 94550139 94550195 -107778152 + G-rich Low_complexity Low_complexity 6 59 0 249 33 0 0 chr4 94550373 94550403 -107777944 + (TG)n Simple_repeat Simple_repeat 1 30 0 215 61 30 0 chr4 94550706 94550739 -107777608 + (TC)n Simple_repeat Simple_repeat 2 35 0 1994 130 10 0 chr4 94552505 94552804 -107775543 - AluSg SINE Alu -8 302 1 2235 100 0 10 chr4 94552876 94553186 -107775161 - AluSq SINE Alu -6 307 1 21 36 0 0 chr4 94553948 94553976 -107774371 + AT_rich Low_complexity Low_complexity 1 28 0 587 220 182 0 chr4 94554825 94554984 -107773363 + MER5A DNA MER1_type 2 189 0 279 302 35 0 chr4 94555683 94555769 -107772578 + L2 LINE L2 3221 3309 -4 21 36 0 0 chr4 94557654 94557682 -107770665 + AT_rich Low_complexity Low_complexity 1 28 0 1066 144 17 6 chr4 94558087 94558260 -107770087 + AluJo SINE Alu 133 307 -5 241 252 113 26 chr4 94559876 94559991 -107768356 + L2 LINE L2 3135 3259 -54 991 181 0 18 chr4 94560073 94560244 -107768103 - FRAM SINE Alu -11 165 1 840 47 0 0 chr4 94560588 94560695 -107767652 - L1PA5 LINE L1 0 6154 6048 195 42 0 0 chr4 94561383 94561407 -107766940 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1923 135 6 29 chr4 94561556 94561867 -107766480 + AluSx SINE Alu 1 304 -8 2315 84 0 10 chr4 94562543 94562851 -107765496 - AluSc SINE Alu -4 305 1 1766 171 106 9 chr4 94562878 94562907 -107765440 - MLT2C1 LTR ERVL -8 389 364 491 45 15 0 chr4 94562907 94562973 -107765374 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 1766 171 106 9 chr4 94562973 94563293 -107765054 - MLT2C1 LTR ERVL -33 364 6 406 347 46 92 chr4 94565099 94565379 -107762968 + L2 LINE L2 2943 3206 -66 393 22 0 0 chr4 94565379 94565425 -107762922 + (CA)n Simple_repeat Simple_repeat 2 47 0 406 347 46 92 chr4 94565425 94565490 -107762857 + L2 LINE L2 3206 3272 0 1911 149 0 17 chr4 94565582 94565877 -107762470 - AluJo SINE Alu -12 300 11 321 118 13 26 chr4 94568917 94568993 -107759354 + (TTTA)n Simple_repeat Simple_repeat 2 76 0 435 268 67 12 chr4 94569078 94569242 -107759105 - MIR SINE MIR -14 248 76 39 51 0 13 chr4 94569744 94569777 -107758570 + AT_rich Low_complexity Low_complexity 1 33 -44 1920 154 0 0 chr4 94569777 94570063 -107758284 + AluSx SINE Alu 1 286 -26 39 51 0 13 chr4 94570063 94570107 -107758240 + AT_rich Low_complexity Low_complexity 33 77 0 750 274 15 5 chr4 94570984 94571188 -107757159 - MIR SINE MIR -21 241 36 361 164 45 0 chr4 94571878 94571945 -107756402 + Tigger2 DNA MER2_type 2 71 -2647 651 253 36 18 chr4 94571979 94572145 -107756202 - MER8 DNA MER2_type -61 178 10 270 261 82 0 chr4 94573951 94574034 -107754313 - MLT1K LTR MaLR -8 607 492 218 411 35 9 chr4 94574517 94574743 -107753604 - L2 LINE L2 -385 2929 2698 4708 82 10 10 chr4 94574780 94575472 -107752875 - L1PA3 LINE L1 0 6155 5464 765 238 72 0 chr4 94576040 94576221 -107752126 + MER20 DNA MER1_type 7 200 -19 610 277 45 17 chr4 94576231 94576408 -107751939 + MER5A DNA MER1_type 1 182 -7 226 256 244 0 chr4 94577001 94577079 -107751268 - MER5A DNA MER1_type -83 106 10 29 28 0 0 chr4 94577241 94577277 -107751070 + AT_rich Low_complexity Low_complexity 1 36 0 959 98 148 44 chr4 94577342 94577447 -107750900 + MER30 DNA MER1_type 1 94 -136 324 0 0 0 chr4 94577447 94577483 -107750864 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 959 98 148 44 chr4 94577483 94577560 -107750787 + MER30 DNA MER1_type 94 202 -28 938 205 29 4 chr4 94577643 94577882 -107750465 - L1MA5 LINE L1 -2 6298 6054 43624 39 4 2 chr4 94578215 94583824 -107744523 - L1P1 LINE L1 -529 5626 7 1341 227 37 4 chr4 94583851 94584002 -107744345 - AluJo SINE Alu -30 282 117 189 0 0 0 chr4 94584002 94584023 -107744324 + (TTA)n Simple_repeat Simple_repeat 1 21 0 1341 227 37 4 chr4 94584023 94584144 -107744203 - AluJo SINE Alu -195 117 1 194 301 27 0 chr4 94584183 94584256 -107744091 - L2 LINE L2 -860 2454 2380 200 282 14 28 chr4 94584618 94584689 -107743658 - MIR SINE MIR 0 262 193 531 289 28 41 chr4 94584720 94584963 -107743384 - MIR SINE MIR -1 261 21 488 288 34 0 chr4 94586079 94586225 -107742122 - MIR SINE MIR 0 262 112 252 336 60 0 chr4 94586373 94586489 -107741858 + MIR SINE MIR 138 260 -2 21 71 0 0 chr4 94587903 94587945 -107740402 + AT_rich Low_complexity Low_complexity 1 42 0 340 305 60 6 chr4 94588340 94588507 -107739840 - MIR SINE MIR -2 260 85 295 412 68 0 chr4 94590306 94590454 -107737893 - L2 LINE L2 0 3272 3115 1797 140 60 23 chr4 94590810 94591159 -107737188 + MER47A DNA MER2_type 2 363 -3 21 0 0 0 chr4 94591614 94591635 -107736712 + AT_rich Low_complexity Low_complexity 1 21 0 10923 37 0 0 chr4 94592280 94594358 -107733989 - L1PA4 LINE L1 -7 6148 4071 3003 107 41 0 chr4 94595260 94595728 -107732619 - L1MA3 LINE L1 -225 6080 5594 1364 126 22 0 chr4 94595728 94595948 -107732399 + L1MA3 LINE L1 6071 6305 0 23 68 0 0 chr4 94595976 94596020 -107732327 + AT_rich Low_complexity Low_complexity 1 44 0 335 346 96 0 chr4 94596748 94596904 -107731443 - MIR SINE MIR -72 190 20 756 293 32 16 chr4 94597266 94597515 -107730832 - MIR SINE MIR -4 258 6 212 240 20 0 chr4 94598021 94598071 -107730276 + MER5C DNA MER1_type 2 52 -272 232 278 103 0 chr4 94598086 94598183 -107730164 + MER5C DNA MER1_type 218 324 0 1581 295 34 14 chr4 94599119 94599620 -107728727 + L1MEc LINE L1 55 565 -5831 * 2446 237 20 50 chr4 94599613 94600270 -107728077 + L1ME1 LINE L1 5448 6082 -84 1001 213 49 0 chr4 94600270 94600495 -107727852 + MER46A DNA MER2_type 1 236 0 2446 237 20 50 chr4 94600495 94600572 -107727775 + L1ME1 LINE L1 6082 6160 -6 1017 133 205 0 chr4 94602682 94602877 -107725470 + MER46A DNA MER2_type 1 235 -1 1437 156 56 35 chr4 94604186 94604474 -107723873 - AluJo SINE Alu -10 302 9 198 0 0 0 chr4 94604920 94604942 -107723405 + (TA)n Simple_repeat Simple_repeat 1 22 0 2024 136 0 0 chr4 94605106 94605400 -107722947 + AluSx SINE Alu 1 294 -18 708 306 18 27 chr4 94605666 94605885 -107722462 + MIR SINE MIR 14 230 -32 688 196 0 14 chr4 94605885 94606033 -107722314 + L1PA15 LINE L1 6020 6165 0 321 156 104 0 chr4 94606163 94606240 -107722107 + L1MB4 LINE L1 5814 5898 -282 200 136 68 0 chr4 94607697 94607741 -107720606 + (TTAAA)n Simple_repeat Simple_repeat 1 47 0 22 0 0 0 chr4 94610573 94610595 -107717752 + AT_rich Low_complexity Low_complexity 1 22 0 539 152 24 116 chr4 94611985 94612149 -107716198 + MER104 DNA Tc2 29 177 -3 22 0 0 0 chr4 94613033 94613055 -107715292 + AT_rich Low_complexity Low_complexity 1 22 0 328 316 60 8 chr4 94614104 94614237 -107714110 + L3b LINE CR1 1434 1573 -10 321 247 23 33 chr4 94614290 94614380 -107713967 + L1MC4 LINE L1 6559 6702 -1139 2216 108 51 20 chr4 94616831 94617184 -107711163 - THE1B LTR MaLR 0 364 1 434 281 174 22 chr4 94617258 94617482 -107710865 + MIR SINE MIR 2 259 -3 329 231 65 65 chr4 94618027 94618135 -107710212 + L2 LINE L2 3164 3271 -1 418 377 46 8 chr4 94618939 94619178 -107709169 + MIR SINE MIR 15 262 0 3142 134 11 13 chr4 94619900 94620534 -107707813 + L1MC1 LINE L1 5644 6332 -1 238 211 70 14 chr4 94620648 94620719 -107707628 + L1ME LINE L1 5716 5790 -331 298 218 23 46 chr4 94620756 94620843 -107707504 + MLT1L LTR MaLR 1 85 -530 256 240 24 5 chr4 94620911 94621009 -107707338 + MLT1L LTR MaLR 124 287 -328 535 278 119 18 chr4 94621125 94621352 -107706995 + LTR16A LTR ERVL 19 268 -182 297 0 0 0 chr4 94621456 94621489 -107706858 + (CA)n Simple_repeat Simple_repeat 2 34 0 1743 170 42 12 chr4 94621659 94621995 -107706352 - MER21B LTR ERV1 -69 794 449 2211 271 21 32 chr4 94623447 94624535 -107703812 - L1P LINE L1 -2670 3476 2401 581 313 23 12 chr4 94625444 94625703 -107702644 + Tigger7 DNA MER2_type 5 266 -467 213 39 0 0 chr4 94625703 94625729 -107702618 + (CA)n Simple_repeat Simple_repeat 1 26 0 213 178 0 0 chr4 94625729 94625774 -107702573 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 2067 130 0 10 chr4 94627586 94627886 -107700461 + AluSx SINE Alu 1 297 -15 996 170 106 7 chr4 94628376 94628659 -107699688 + MER33 DNA MER1_type 1 311 -13 297 51 0 0 chr4 94629995 94630034 -107698313 + (TG)n Simple_repeat Simple_repeat 1 39 0 219 381 31 0 chr4 94630089 94630186 -107698161 + MIR SINE MIR 6 105 -157 22 35 0 0 chr4 94630801 94630830 -107697517 + AT_rich Low_complexity Low_complexity 1 29 0 1254 208 33 68 chr4 94631652 94631989 -107696358 + MER21B LTR ERV1 1 325 -538 1606 123 44 17 chr4 94632008 94632301 -107696046 - L1MA1 LINE L1 0 6302 6002 321 26 0 0 chr4 94632779 94632817 -107695530 + (TG)n Simple_repeat Simple_repeat 2 39 0 4775 251 27 32 chr4 94632910 94634171 -107694176 + L1MB8 LINE L1 -517 736 -5548 880 294 46 11 chr4 94634168 94634684 -107693663 + L1MB8 LINE L1 1452 2127 -4436 * 571 251 75 6 chr4 94634678 94634952 -107693395 + L1MB8 LINE L1 2332 2591 -3791 * 2777 218 75 35 chr4 94634991 94635077 -107693270 + L1MB8 LINE L1 2992 3073 -3341 1365 109 54 0 chr4 94635077 94635298 -107693049 + L1MA2 LINE L1 6072 6304 0 2777 218 75 35 chr4 94635298 94635495 -107692852 + L1MB8 LINE L1 3073 3261 -3153 1136 168 49 9 chr4 94635495 94635721 -107692626 + MER46A DNA MER2_type 2 236 0 2777 218 75 35 chr4 94635721 94638471 -107689876 + L1MB8 LINE L1 3261 6410 -4 1821 162 14 10 chr4 94638799 94639095 -107689252 + AluJb SINE Alu 1 297 -15 315 239 130 22 chr4 94639501 94639593 -107688754 - L2 LINE L2 0 3272 3171 2306 182 81 20 chr4 94640541 94641116 -107687231 + Tigger7 DNA MER2_type 18 2491 -96 331 293 28 19 chr4 94641117 94641223 -107687124 + L2 LINE L2 3192 3298 -15 372 287 32 0 chr4 94641478 94641572 -107686775 + MIR SINE MIR 50 146 -116 488 272 129 28 chr4 94642685 94642902 -107685445 - MIR SINE MIR -3 259 21 2098 120 52 33 chr4 94642969 94643337 -107685010 + THE1C LTR MaLR 1 375 0 30 0 0 0 chr4 94643971 94644001 -107684346 + AT_rich Low_complexity Low_complexity 1 30 0 1567 176 0 49 chr4 94644118 94644249 -107684098 + AluJo SINE Alu 11 147 -165 2252 104 0 0 chr4 94644249 94644536 -107683811 + AluSg SINE Alu 1 287 -23 195 42 0 0 chr4 94644539 94644563 -107683784 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1567 176 0 49 chr4 94644563 94644733 -107683614 + AluJo SINE Alu 149 301 -11 185 365 24 12 chr4 94644883 94644968 -107683379 + MIR SINE MIR 20 105 -157 1996 127 3 3 chr4 94645466 94645771 -107682576 - AluSx SINE Alu 0 305 1 649 268 16 27 chr4 94647121 94647304 -107681043 + LTR41 LTR ERVL 1 181 -592 23 0 0 0 chr4 94647844 94647867 -107680480 + AT_rich Low_complexity Low_complexity 1 23 0 1091 201 123 20 chr4 94648032 94648276 -107680071 + AluJo SINE Alu 14 282 -30 2199 103 14 0 chr4 94648648 94648940 -107679407 + AluSq SINE Alu 1 296 -17 215 204 0 23 chr4 94650910 94650954 -107677393 + (CA)n Simple_repeat Simple_repeat 2 44 0 1528 184 50 4 chr4 94651567 94651845 -107676502 + AluJb SINE Alu 1 291 -21 531 272 19 100 chr4 94652889 94653150 -107675197 + MIR SINE MIR 8 247 -15 2112 138 0 0 chr4 94653279 94653584 -107674763 + AluSq SINE Alu 1 305 -8 42291 38 22 1 chr4 94654163 94660187 -107668160 - L1PA3 LINE L1 -4 6151 1 623 325 88 52 chr4 94660623 94661091 -107667256 - LTR16B LTR ERVL -18 446 2 767 295 139 42 chr4 94661471 94661976 -107666371 - MLT1H1 LTR MaLR 0 555 2 386 275 33 0 chr4 94662199 94662319 -107666028 + MIR SINE MIR 84 207 -55 1574 184 3 38 chr4 94662420 94662736 -107665611 + AluJb SINE Alu 1 305 -7 283 266 168 26 chr4 94663795 94663908 -107664439 - L2 LINE L2 -3 3269 3141 1856 199 68 24 chr4 94664567 94665025 -107663322 + L1MD2 LINE L1 5882 6359 0 26 0 0 0 chr4 94665508 94665534 -107662813 + AT_rich Low_complexity Low_complexity 1 26 0 223 283 38 0 chr4 94666339 94666392 -107661955 + L2 LINE L2 3210 3264 -8 1808 172 24 9 chr4 94667491 94667823 -107660524 - MER44D DNA MER2_type -2 607 1 422 347 171 9 chr4 94668390 94668834 -107659513 + L2 LINE L2 2291 2806 -508 743 185 7 15 chr4 94668924 94669059 -107659288 - AluJo SINE Alu -178 134 1 723 167 8 15 chr4 94669319 94669451 -107658896 - L1PA16 LINE L1 -6 6160 6030 4824 192 9 45 chr4 94669460 94669701 -107658646 + L1 LINE L1 3741 3989 -2157 1742 183 3 19 chr4 94669701 94670013 -107658334 + AluJb SINE Alu 5 311 -1 4824 192 9 45 chr4 94670013 94670300 -107658047 + L1 LINE L1 3989 4285 -1861 2182 112 0 10 chr4 94670300 94670603 -107657744 + AluSg SINE Alu 1 300 -10 4824 192 9 45 chr4 94670603 94671242 -107657105 + L1 LINE L1 4285 4867 -1279 528 253 94 35 chr4 94671513 94671683 -107656664 - MER5A DNA MER1_type -1 188 9 229 209 0 0 chr4 94672989 94673032 -107655315 + MIR SINE MIR 99 141 -67 4285 263 107 27 chr4 94673307 94675116 -107653231 + L2 LINE L2 1195 3163 -150 182 171 0 0 chr4 94675772 94675807 -107652540 + L3 LINE CR1 1239 1273 -304 335 295 56 13 chr4 94676138 94676295 -107652052 + MLT1G1 LTR MaLR 1 161 -388 22 0 0 0 chr4 94676906 94676928 -107651419 + AT_rich Low_complexity Low_complexity 1 22 0 1876 176 3 3 chr4 94677053 94677365 -107650982 + AluJo SINE Alu 1 312 0 183 42 0 0 chr4 94677860 94677884 -107650463 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr4 94678006 94678028 -107650319 + AT_rich Low_complexity Low_complexity 1 22 0 12868 92 2 3 chr4 94678830 94680559 -107647788 + L1PA7 LINE L1 1 1727 -4734 22791 82 9 5 chr4 94680564 94684600 -107643747 + L1PA7 LINE L1 2418 6469 0 229 132 15 88 chr4 94684914 94684962 -107643385 - L1M LINE L1 -988 5316 5273 1531 162 65 84 chr4 94684962 94685289 -107643058 + THE1C LTR MaLR 1 322 -53 333 0 0 0 chr4 94685289 94685326 -107643021 + (TA)n Simple_repeat Simple_repeat 2 38 0 1531 162 65 84 chr4 94685326 94685380 -107642967 + THE1C LTR MaLR 322 375 0 14030 183 26 6 chr4 94685380 94689256 -107639091 - L1 LINE L1 -874 6691 2736 5946 206 97 13 chr4 94689255 94690718 -107637629 - L1 LINE L1 -5541 2024 20 21 82 0 0 chr4 94691809 94691858 -107636489 + AT_rich Low_complexity Low_complexity 1 49 0 446 252 30 0 chr4 94693158 94693293 -107635054 - L1PBa LINE L1 -5896 967 829 6283 168 61 28 chr4 94693340 94696137 -107632210 + L1MA3 LINE L1 1 2277 -3926 2162 141 0 0 chr4 94696137 94696450 -107631897 + AluSq SINE Alu 1 313 0 6283 168 61 28 chr4 94696450 94696840 -107631507 + L1MA3 LINE L1 2277 2652 -3551 6708 191 23 10 chr4 94696844 94698293 -107630054 + L1MA3 LINE L1 3365 4831 -1372 928 149 7 0 chr4 94698293 94698444 -107629903 + L1PB2 LINE L1 5996 6150 -1 2194 103 7 0 chr4 94698624 94698916 -107629431 - AluSc SINE Alu -11 298 5 1437 214 176 28 chr4 94699106 94699503 -107628844 + MLT2B1 LTR ERVL 1 456 -64 456 72 0 0 chr4 94699553 94699622 -107628725 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 180 125 0 0 chr4 94699907 94699939 -107628408 + (TA)n Simple_repeat Simple_repeat 1 32 0 1418 187 54 39 chr4 94700074 94700405 -107627942 - MER44D DNA MER2_type -1 608 3 324 279 170 12 chr4 94700686 94700851 -107627496 + MIR SINE MIR 71 261 -1 389 275 105 85 chr4 94701103 94701350 -107626997 + MIR SINE MIR 1 252 -10 5995 149 25 18 chr4 94701813 94702033 -107626314 + L1MA3 LINE L1 5110 5327 -1035 1603 149 65 84 chr4 94702033 94702087 -107626260 - THE1C LTR MaLR 0 375 322 333 0 0 0 chr4 94702087 94702124 -107626223 + (TA)n Simple_repeat Simple_repeat 1 37 0 1603 149 65 84 chr4 94702124 94702451 -107625896 - THE1C LTR MaLR -53 322 1 5995 149 25 18 chr4 94702451 94702994 -107625353 + L1MA3 LINE L1 5327 5888 -474 2213 82 0 0 chr4 94702994 94703291 -107625056 + AluSx SINE Alu 13 309 0 5995 149 25 18 chr4 94703291 94703764 -107624583 + L1MA3 LINE L1 5888 6356 -6 23 33 0 0 chr4 94704233 94704263 -107624084 + AT_rich Low_complexity Low_complexity 1 30 0 277 273 0 0 chr4 94705785 94705851 -107622496 - MER45 DNA AcHobo 0 1581 1516 248 303 202 0 chr4 94705846 94705935 -107622412 - MER45 DNA AcHobo -1474 107 1 * 23 54 0 0 chr4 94706165 94706202 -107622145 + AT_rich Low_complexity Low_complexity 1 37 0 2092 117 4 0 chr4 94706448 94706907 -107621440 - AluSx SINE Alu 0 460 1 1623 203 35 28 chr4 94707021 94707421 -107620926 - L1PA16 LINE L1 -1663 4483 4081 5350 147 11 2 chr4 94707428 94709107 -107619240 + L1PA16 LINE L1 4495 6161 -5 425 293 55 17 chr4 94709252 94709433 -107618914 - MER117 DNA MER1_type -4 193 6 285 230 0 0 chr4 94710576 94710650 -107617697 + CT-rich Low_complexity Low_complexity 1 74 0 2049 120 0 102 chr4 94711371 94711763 -107616584 + L1PA15 LINE L1 5808 6159 -6 240 122 0 0 chr4 94712682 94712723 -107615624 + (TA)n Simple_repeat Simple_repeat 1 41 0 30 77 0 0 chr4 94713543 94713608 -107614739 + AT_rich Low_complexity Low_complexity 1 65 0 9446 163 18 25 chr4 94713623 94714756 -107613591 - L1MA4 LINE L1 -9 6291 5151 1952 164 3 0 chr4 94714756 94715054 -107613293 - AluJb SINE Alu -13 299 1 9446 163 18 25 chr4 94715054 94716584 -107611763 - L1MA4 LINE L1 -1149 5151 3464 25 75 0 0 chr4 94716759 94716812 -107611535 + AT_rich Low_complexity Low_complexity 1 53 0 308 294 119 40 chr4 94718232 94718409 -107609938 + L2 LINE L2 2445 2635 -679 231 359 22 0 chr4 94718732 94718824 -107609523 + L2 LINE L2 3125 3218 -54 472 309 60 37 chr4 94718886 94719184 -107609163 + Charlie2 DNA MER1_type 2 306 -2556 442 219 33 53 chr4 94719373 94719524 -107608823 + Charlie2a DNA MER1_type 1511 1658 -1204 425 266 102 80 chr4 94720028 94720254 -107608093 - MIR SINE MIR 0 262 32 673 206 62 16 chr4 94720255 94720449 -107607898 - L1MA4 LINE L1 -5 6295 6093 235 235 0 0 chr4 94722552 94722603 -107605744 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 66 73 0 0 chr4 94723825 94723961 -107604386 + AT_rich Low_complexity Low_complexity 1 136 0 820 114 8 8 chr4 94724493 94724625 -107603722 + FLAM_C SINE Alu 2 133 0 33 25 0 0 chr4 94724672 94724712 -107603635 + AT_rich Low_complexity Low_complexity 1 40 0 250 315 79 0 chr4 94725361 94725488 -107602859 - L1ME LINE L1 -400 5764 5628 23 0 0 0 chr4 94725509 94725532 -107602815 + AT_rich Low_complexity Low_complexity 1 23 0 311 279 7 59 chr4 94725634 94725770 -107602577 - L1ME LINE L1 -2387 5421 5293 429 243 66 33 chr4 94725772 94725953 -107602394 - L1P5 LINE L1 -710 5441 5255 591 264 132 13 chr4 94725958 94726193 -107602154 + LTR16A1 LTR ERVL 189 451 -6 20392 31 3 0 chr4 94726563 94729040 -107599307 - L1P LINE L1 -794 5352 2868 191 317 0 17 chr4 94729041 94729101 -107599246 - MIR SINE MIR -203 59 1 22 56 0 0 chr4 94729683 94729719 -107598628 + AT_rich Low_complexity Low_complexity 1 36 0 218 294 49 20 chr4 94730636 94730738 -107597609 - MIR SINE MIR -25 237 133 1542 187 0 30 chr4 94731096 94731395 -107596952 - AluJb SINE Alu -20 292 3 1659 201 0 16 chr4 94732780 94733122 -107595225 + AluJo SINE Alu 3 312 0 21 26 0 26 chr4 94733510 94733521 -107594826 + AT_rich Low_complexity Low_complexity 1 11 -27 7571 27 5 0 chr4 94733521 94735070 -107593277 + L1PA3 LINE L1 4602 6154 -1 21 26 0 26 chr4 94735070 94735097 -107593250 + AT_rich Low_complexity Low_complexity 11 38 0 2315 74 3 3 chr4 94735176 94735475 -107592872 - AluY SINE Alu -12 299 1 228 243 14 54 chr4 94736105 94736179 -107592168 - MIR SINE MIR -50 212 142 1008 202 43 5 chr4 94737615 94737823 -107590524 + MER20 DNA MER1_type 4 219 0 222 303 88 67 chr4 94737869 94738212 -107590135 - L2 LINE L2 -1506 1808 1459 2434 62 0 7 chr4 94739098 94739402 -107588945 + AluY SINE Alu 1 302 -9 4499 218 43 20 chr4 94740240 94740411 -107587936 + L1MA3 LINE L1 16 182 -7383 7628 25 0 4 chr4 94740411 94741793 -107586554 + L1PA3 LINE L1 4778 6155 0 4499 218 43 20 chr4 94741793 94742623 -107585724 + L1MA3 LINE L1 182 1040 -6525 515 186 59 10 chr4 94742625 94742727 -107585620 + L1MA3 LINE L1 1714 1820 -5745 * 4144 169 40 13 chr4 94742725 94744532 -107583815 + L1MA3 LINE L1 5792 7720 -4 2014 112 7 3 chr4 94745794 94746080 -107582267 - AluY SINE Alu -22 289 3 796 274 72 41 chr4 94747449 94747796 -107580551 + MLT1I LTR MaLR 7 370 -39 2019 109 3 34 chr4 94747796 94748121 -107580226 - AluSq SINE Alu 0 317 2 796 274 72 41 chr4 94748121 94748163 -107580184 + MLT1I LTR MaLR 370 409 0 550 322 13 27 chr4 94749160 94749398 -107578949 + MIR SINE MIR 30 261 -1 1958 128 7 13 chr4 94749652 94749956 -107578391 + AluSx SINE Alu 4 305 -7 2249 103 0 10 chr4 94750302 94750614 -107577733 + AluSx SINE Alu 1 309 -3 248 0 31 0 chr4 94750665 94750697 -107577650 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1087 184 35 5 chr4 94750703 94750904 -107577443 - AluJo SINE Alu -30 282 76 913 266 88 68 chr4 94752761 94753610 -107574737 + L2 LINE L2 2440 3313 0 255 367 160 0 chr4 94754236 94754405 -107573942 + MIR SINE MIR 41 236 -26 23 0 0 0 chr4 94754668 94754691 -107573656 + AT_rich Low_complexity Low_complexity 1 23 0 410 270 203 0 chr4 94754703 94754866 -107573481 + MIR SINE MIR 3 198 -64 268 345 148 7 chr4 94754866 94755008 -107573339 + MIR SINE MIR 80 241 -21 234 306 48 0 chr4 94755214 94755276 -107573071 - MIR SINE MIR -110 98 34 1104 100 6 12 chr4 94757789 94757959 -107570388 - L1PA5 LINE L1 -1 6153 5985 197 306 269 11 chr4 94758263 94758449 -107569898 - MIR SINE MIR -27 235 2 4433 127 25 30 chr4 94758969 94759757 -107568590 - L1MA7 LINE L1 0 6291 5508 462 260 0 10 chr4 94760056 94760160 -107568187 - LTR40a LTR ERVL -413 106 4 1375 172 19 0 chr4 94760203 94760459 -107567888 + L1PA16 LINE L1 5897 6157 -9 1950 71 3 142 chr4 94761360 94761713 -107566634 - AluY SINE Alu -7 304 1 333 244 269 19 chr4 94762664 94762820 -107565527 - MIR SINE MIR -3 259 65 449 259 36 7 chr4 94764530 94764669 -107563678 - MIR SINE MIR -49 213 71 274 62 62 0 chr4 94765834 94765882 -107562465 + CT-rich Low_complexity Low_complexity 2 52 0 2715 183 46 77 chr4 94766546 94766655 -107561692 - L1MA7 LINE L1 -9 6282 6171 186 103 0 0 chr4 94766655 94766684 -107561663 + (TG)n Simple_repeat Simple_repeat 2 30 0 2715 183 46 77 chr4 94766684 94767319 -107561028 - L1MA7 LINE L1 -120 6171 5561 331 355 16 0 chr4 94767315 94767436 -107560911 - L1MDb LINE L1 -5903 506 384 * 1357 271 22 0 chr4 94767451 94767765 -107560582 - L1MDb LINE L1 -6088 321 1 2016 112 14 0 chr4 94768494 94768789 -107559558 - AluSx SINE Alu -13 299 1 2419 54 0 13 chr4 94768814 94769128 -107559219 - AluY SINE Alu -1 310 1 337 313 43 39 chr4 94770014 94770247 -107558100 - L1M4 LINE L1 -1345 4801 4568 413 298 48 53 chr4 94770468 94770824 -107557523 - L1M4 LINE L1 -1737 4409 4056 193 229 83 0 chr4 94771058 94771106 -107557241 - L2 LINE L2 0 3313 3262 286 301 222 9 chr4 94771206 94771422 -107556925 + MIR SINE MIR 1 262 0 349 212 0 0 chr4 94772387 94772453 -107555894 - Tigger7 DNA MER2_type -35 2552 2487 2698 89 0 0 chr4 94772887 94773259 -107555088 - L1PA13 LINE L1 -3 6160 5789 208 333 0 0 chr4 94773371 94773440 -107554907 + CT-rich Low_complexity Low_complexity 3 71 0 832 225 106 13 chr4 94773520 94773747 -107554600 - Tigger7 DNA MER2_type -288 262 15 369 0 0 0 chr4 94773818 94773859 -107554488 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 34 42 0 0 chr4 94774312 94774360 -107553987 + AT_rich Low_complexity Low_complexity 1 48 0 259 337 83 63 chr4 94775072 94775470 -107552877 - L2 LINE L2 -342 2972 2567 236 214 0 36 chr4 94776452 94776508 -107551839 + Tigger5 DNA MER2_type 1 54 -2269 * 393 189 0 14 chr4 94776477 94776551 -107551796 + Tigger5 DNA MER2_type 2251 2323 0 452 215 0 11 chr4 94776599 94776692 -107551655 + Tigger5 DNA MER2_type 2232 2323 0 3538 98 13 2 chr4 94776900 94777422 -107550925 + L1MA2 LINE L1 5775 6302 -2 1575 136 8 4 chr4 94777528 94777795 -107550552 - AluSx SINE Alu 0 309 42 266 360 12 0 chr4 94777810 94777896 -107550451 - L2 LINE L2 -675 2639 2553 374 370 123 10 chr4 94778081 94778478 -107549869 - L2 LINE L2 -1052 2262 1821 21 0 0 0 chr4 94779664 94779685 -107548662 + AT_rich Low_complexity Low_complexity 1 21 0 1047 327 72 25 chr4 94781192 94782039 -107546308 - L2 LINE L2 -16 3297 2417 1216 200 100 13 chr4 94783123 94783563 -107544784 + Charlie1 DNA MER1_type 2208 2760 -1 290 294 0 12 chr4 94783584 94783669 -107544678 + MIR SINE MIR 100 183 -79 667 299 40 49 chr4 94783697 94784025 -107544322 + LTR16A LTR ERVL 22 346 -104 641 153 0 0 chr4 94785254 94785352 -107542995 + AluS SINE Alu 2 99 -213 23 0 0 0 chr4 94786771 94786794 -107541553 + AT_rich Low_complexity Low_complexity 1 23 0 1192 230 59 31 chr4 94787130 94787521 -107540826 + LTR37B LTR ERV1 67 468 0 187 30 30 30 chr4 94787731 94787764 -107540583 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1918 231 79 42 chr4 94787949 94788634 -107539713 + L1MC4 LINE L1 7333 8042 0 2004 124 3 26 chr4 94788635 94788942 -107539405 + AluSq SINE Alu 1 300 -13 224 297 34 59 chr4 94789684 94789802 -107538545 + L2 LINE L2 3171 3285 -28 183 80 0 0 chr4 94789960 94789985 -107538362 + (A)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr4 94790075 94790104 -107538243 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr4 94790677 94790704 -107537643 + AT_rich Low_complexity Low_complexity 1 27 0 1997 58 0 150 chr4 94791206 94791552 -107536795 + AluY SINE Alu 11 304 -7 1416 164 19 0 chr4 94792533 94792789 -107535558 - L1PA16 LINE L1 -9 6157 5897 1110 249 133 42 chr4 94792832 94793305 -107535042 + LTR40a LTR ERVL 4 519 0 219 266 374 0 chr4 94794028 94794167 -107534180 - MIR SINE MIR -13 249 59 21 0 0 0 chr4 94796296 94796317 -107532030 + AT_rich Low_complexity Low_complexity 1 21 0 227 146 21 0 chr4 94796379 94796427 -107531920 - L1MCa LINE L1 -4362 2064 2016 1268 140 96 20 chr4 94797406 94797698 -107530649 - L1MA7 LINE L1 -10 6281 5968 272 247 93 87 chr4 94798356 94798506 -107529841 + MIR SINE MIR 84 234 -28 698 289 78 45 chr4 94798842 94799355 -107528992 + HAL1b LINE L1 121 650 -698 1611 188 14 0 chr4 94799383 94799675 -107528672 + AluJo SINE Alu 1 296 -16 324 236 100 18 chr4 94799675 94799785 -107528562 + L2 LINE L2 3013 3131 -182 23 33 0 0 chr4 94799863 94799893 -107528454 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 94799982 94800003 -107528344 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 94800054 94800075 -107528272 + AT_rich Low_complexity Low_complexity 1 21 0 490 224 22 0 chr4 94800179 94800408 -107527939 + GA-rich Low_complexity Low_complexity 1 234 0 2045 104 24 17 chr4 94803503 94803800 -107524547 + AluSq SINE Alu 1 299 -14 1911 211 52 11 chr4 94804714 94805155 -107523192 + LTR40b LTR ERVL 4 462 0 910 268 36 42 chr4 94805156 94805462 -107522885 + HERVL40 LTR ERVL 1 304 -5226 728 251 5 20 chr4 94805463 94805658 -107522689 + HERVL40 LTR ERVL 1395 1586 -3944 * 1679 261 23 19 chr4 94805657 94806129 -107522218 + HERVL40 LTR ERVL 3616 4089 -1441 1186 285 88 63 chr4 94806119 94806666 -107521681 + HERVL40 LTR ERVL 2043 2378 -659 * 278 277 106 47 chr4 94806835 94807070 -107521277 + HERVL40 LTR ERVL 2460 2708 -329 1086 230 66 0 chr4 94807549 94807806 -107520541 + HERVL40 LTR ERVL 5242 5515 -15 1280 252 80 43 chr4 94807822 94808262 -107520085 + LTR40b LTR ERVL 7 462 0 215 354 165 0 chr4 94809383 94809510 -107518837 - MIR SINE MIR -112 150 3 345 279 42 62 chr4 94810120 94810278 -107518069 - MLT1J2 LTR MaLR -30 416 267 2523 147 21 9 chr4 94810762 94811185 -107517162 - MSTA LTR MaLR 0 428 1 23 33 0 0 chr4 94811337 94811367 -107516980 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 94812485 94812507 -107515840 + AT_rich Low_complexity Low_complexity 1 22 0 206 309 0 0 chr4 94813950 94814005 -107514342 + L2 LINE L2 3218 3272 0 220 355 0 0 chr4 94814692 94814754 -107513593 + MIR SINE MIR 53 114 -148 1233 202 6 96 chr4 94814758 94815090 -107513257 - AluJo SINE Alu 0 302 1 233 75 25 0 chr4 94815154 94815194 -107513153 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 1154 36 0 0 chr4 94815194 94815331 -107513016 - L1PA5 LINE L1 -24 6130 5994 * 1197 41 0 0 chr4 94815329 94815476 -107512871 + L1PA5 LINE L1 5834 5980 -174 185 323 108 15 chr4 94815618 94815748 -107512599 + L2 LINE L2 2776 2917 -397 5670 120 12 19 chr4 94815770 94816490 -107511857 - L1PB3 LINE L1 -2 6152 5438 1966 62 0 8 chr4 94816490 94816732 -107511615 - AluY SINE Alu -13 298 59 5670 120 12 19 chr4 94816732 94816955 -107511392 - L1PB3 LINE L1 -716 5438 5215 3521 191 33 16 chr4 94816954 94817765 -107510582 + L1PB3 LINE L1 4408 5232 -914 * 487 316 206 3 chr4 94817765 94818091 -107510256 + L2 LINE L2 2922 3313 0 1187 252 90 73 chr4 94818443 94818978 -107509369 + MER77 LTR ERV1 54 597 -8 230 299 52 0 chr4 94818984 94819061 -107509286 + MER21A LTR ERV1 688 768 -163 180 331 108 20 chr4 94819094 94819242 -107509105 - MIR3 SINE MIR -3 205 45 268 31 0 0 chr4 94819329 94819361 -107508986 + (TTTG)n Simple_repeat Simple_repeat 3 172 0 2045 104 14 0 chr4 94819361 94819639 -107508708 - AluSx SINE Alu -1 313 1 2072 129 0 0 chr4 94819671 94819965 -107508382 - AluSq SINE Alu -19 294 1 409 176 0 0 chr4 94820870 94820938 -107507409 - FLAM SINE Alu -22 121 54 3893 138 22 10 chr4 94821321 94822011 -107506336 - L1PA16 LINE L1 -9 6157 5460 2301 90 3 31 chr4 94822011 94822332 -107506015 + AluSx SINE Alu 1 312 0 913 68 0 0 chr4 94822344 94822462 -107505885 + L1MA3 LINE L1 6156 6273 -32 338 196 41 52 chr4 94822487 94822584 -107505763 - L1MC4 LINE L1 -1339 6703 6608 319 150 5 10 chr4 94822608 94822694 -107505653 - L1PA16 LINE L1 -689 5476 5392 21 0 0 0 chr4 94823266 94823287 -107505060 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 94824721 94824742 -107503605 + AT_rich Low_complexity Low_complexity 1 21 0 1496 173 36 46 chr4 94824802 94825109 -107503238 - AluJo SINE Alu -8 304 1 208 369 0 0 chr4 94825297 94825362 -107502985 + L2 LINE L2 3197 3261 -52 21 36 0 0 chr4 94825659 94825687 -107502660 + AT_rich Low_complexity Low_complexity 1 28 0 2024 157 42 49 chr4 94825821 94826292 -107502055 - L1MA7 LINE L1 -8 6283 5816 1908 116 7 36 chr4 94826837 94827140 -107501207 + AluSg SINE Alu 17 310 0 255 61 0 0 chr4 94827821 94827854 -107500493 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 29 0 0 0 chr4 94828407 94828436 -107499911 + AT_rich Low_complexity Low_complexity 1 29 0 2014 128 22 76 chr4 94828973 94829381 -107498966 - MLT1B LTR MaLR 0 390 5 545 295 98 4 chr4 94832323 94832557 -107495790 + L1MC5 LINE L1 5613 5868 -1940 1675 186 17 0 chr4 94832558 94832854 -107495493 - AluJb SINE Alu -7 305 5 259 244 129 87 chr4 94833090 94833663 -107494684 + L1MC5 LINE L1 7333 7929 -32 29 28 0 0 chr4 94833854 94833890 -107494457 + AT_rich Low_complexity Low_complexity 1 36 0 2802 13 0 0 chr4 94834247 94834557 -107493790 + AluYa5 SINE Alu 1 310 -1 1145 148 10 0 chr4 94834859 94835055 -107493292 + L1PBa LINE L1 3 200 -6663 12867 154 73 6 chr4 94835055 94838679 -107489668 + L1PBa LINE L1 634 4504 -2358 34174 54 4 0 chr4 94838679 94843005 -107485342 + L1PA4 LINE L1 2 4343 -1803 4029 51 0 4 chr4 94843005 94843508 -107484839 + L1PA4 LINE L1 5645 6155 0 4164 198 20 49 chr4 94843570 94844613 -107483734 + L1 LINE L1 4491 5503 -1359 2240 45 41 21 chr4 94844717 94845007 -107483340 + AluY SINE Alu 16 311 0 270 0 0 0 chr4 94845008 94845038 -107483309 + (TA)n Simple_repeat Simple_repeat 2 31 0 33 25 0 0 chr4 94845205 94845245 -107483102 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 94845491 94845512 -107482835 + AT_rich Low_complexity Low_complexity 1 21 0 425 211 110 0 chr4 94847017 94847126 -107481221 + L1MA9 LINE L1 5960 6080 -232 411 194 46 19 chr4 94847129 94847237 -107481110 + L1MA9 LINE L1 6180 6290 -22 186 250 167 14 chr4 94847284 94847356 -107480991 - MIR SINE MIR -17 245 163 461 300 114 14 chr4 94847413 94847633 -107480714 + MIR SINE MIR 21 262 0 23 0 0 0 chr4 94847724 94847747 -107480600 + AT_rich Low_complexity Low_complexity 1 23 0 2759 69 0 3 chr4 94847891 94848255 -107480092 + L1PA8 LINE L1 5810 6172 0 25 90 0 0 chr4 94848330 94848397 -107479950 + AT_rich Low_complexity Low_complexity 1 67 0 25 0 0 0 chr4 94848488 94848513 -107479834 + AT_rich Low_complexity Low_complexity 1 25 0 541 289 83 6 chr4 94849040 94849220 -107479127 + MIR SINE MIR 3 196 -66 365 310 78 0 chr4 94849928 94850057 -107478290 - MIR SINE MIR -46 216 78 21 0 0 0 chr4 94851166 94851187 -107477160 + AT_rich Low_complexity Low_complexity 1 21 0 529 249 28 11 chr4 94852496 94852673 -107475674 - MER110A LTR ERV1 0 468 289 351 246 51 17 chr4 94852760 94852878 -107475469 - MER110A LTR ERV1 -185 283 162 255 208 69 0 chr4 94852923 94852995 -107475352 - MER110A LTR ERV1 -391 77 1 772 271 88 34 chr4 94853064 94853359 -107474988 - MER110A-int LTR ERV1 0 4647 4337 1462 178 4 8 chr4 94853368 94853621 -107474726 + AluJo SINE Alu 31 282 -30 25 0 0 0 chr4 94854146 94854171 -107474176 + AT_rich Low_complexity Low_complexity 1 25 0 1992 114 4 4 chr4 94854241 94854550 -107473797 - AluSc SINE Alu 0 309 1 506 147 0 0 chr4 94854580 94854655 -107473692 - AluSp SINE Alu -92 221 147 258 254 83 10 chr4 94854756 94854899 -107473448 + HsTC2 DNA Tc2 19 1896 -2 313 313 75 35 chr4 94855344 94855571 -107472776 + L2 LINE L2 2225 2460 -854 258 81 0 0 chr4 94855956 94855993 -107472354 + (GA)n Simple_repeat Simple_repeat 1 37 0 24 32 0 0 chr4 94857892 94857923 -107470424 + AT_rich Low_complexity Low_complexity 1 31 0 40 21 0 0 chr4 94858074 94858121 -107470226 + AT_rich Low_complexity Low_complexity 1 47 0 32 43 0 0 chr4 94858381 94858427 -107469920 + AT_rich Low_complexity Low_complexity 1 46 0 2021 179 47 26 chr4 94858985 94859410 -107468937 - Tigger2a DNA MER2_type 0 434 1 1559 170 11 51 chr4 94859463 94859816 -107468531 + L1MC3 LINE L1 7439 7777 -8 24 0 0 0 chr4 94861526 94861550 -107466797 + AT_rich Low_complexity Low_complexity 1 24 0 363 200 0 8 chr4 94863149 94863269 -107465078 + CT-rich Low_complexity Low_complexity 1 119 0 514 278 0 0 chr4 94863271 94863404 -107464943 - FLAM_A SINE Alu 0 133 1 952 314 112 35 chr4 94863483 94863992 -107464355 + L2 LINE L2 1976 2523 -791 540 245 0 0 chr4 94864072 94864170 -107464177 + Charlie1 DNA MER1_type 6 103 -2658 25 51 0 0 chr4 94864641 94864680 -107463667 + AT_rich Low_complexity Low_complexity 1 39 0 301 341 113 35 chr4 94865151 94865490 -107462857 - L2 LINE L2 -224 3048 2694 180 330 34 34 chr4 94867150 94867238 -107461109 - MIR3 SINE MIR -9 199 112 217 277 21 11 chr4 94867335 94867429 -107460918 + (TA)n Simple_repeat Simple_repeat 1 95 0 2295 55 0 49 chr4 94867461 94867769 -107460578 - AluY SINE Alu -16 295 3 275 160 0 0 chr4 94867897 94867947 -107460400 - MER4-int LTR ERV1 -5438 1160 1111 295 367 68 29 chr4 94868067 94868274 -107460073 + MIR SINE MIR 6 220 -42 513 305 115 4 chr4 94868568 94868794 -107459553 + MIR SINE MIR 11 261 -1 180 0 0 0 chr4 94869144 94869164 -107459183 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 329 0 24 0 chr4 94869420 94869461 -107458886 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 1824 135 21 7 chr4 94869662 94869945 -107458402 + AluSg SINE Alu 1 325 0 197 53 53 0 chr4 94869945 94869983 -107458364 + A-rich Low_complexity Low_complexity 2 180 0 1698 200 0 16 chr4 94870645 94870955 -107457392 - AluJo SINE Alu -7 305 1 1986 193 41 5 chr4 94870997 94871416 -107456931 - MER65A LTR ERV1 0 445 12 1482 217 24 33 chr4 94871917 94872287 -107456060 - MLT1A2 LTR MaLR -4 589 1 603 276 42 53 chr4 94873029 94873312 -107455035 - MER110 LTR ERV1 -14 477 198 2669 182 71 23 chr4 94873571 94874257 -107454090 - Tigger7 DNA MER2_type 0 2587 1 22 0 0 0 chr4 94874297 94874319 -107454028 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 94875018 94875039 -107453308 + AT_rich Low_complexity Low_complexity 1 21 0 411 152 0 0 chr4 94878036 94878102 -107450245 + Tigger2 DNA MER2_type 1 66 -2652 2085 168 70 0 chr4 94878114 94878512 -107449835 + Tigger2 DNA MER2_type 2291 2716 -2 313 266 37 28 chr4 94878808 94878917 -107449430 + L2 LINE L2 3200 3309 -4 351 0 0 0 chr4 94879815 94879854 -107448493 + (TA)n Simple_repeat Simple_repeat 1 39 0 4519 181 130 87 chr4 94880138 94881389 -107446958 - MER52A LTR ERV1 -450 1305 1 21407 135 17 4 chr4 94881389 94888218 -107440129 - HUERS-P3 LTR ERV1 0 7091 1 3752 236 36 26 chr4 94888218 94889700 -107438647 - MER52A LTR ERV1 0 1755 2 1944 149 3 7 chr4 94889728 94890023 -107438324 - AluSx SINE Alu -18 294 1 275 225 17 17 chr4 94890377 94890497 -107437850 + (TA)n Simple_repeat Simple_repeat 1 120 0 187 264 49 181 chr4 94890588 94890732 -107437615 + L3 LINE CR1 1426 1550 -27 1261 159 16 83 chr4 94890787 94891101 -107437246 - MLT1B LTR MaLR -3 387 95 2630 30 3 0 chr4 94891413 94891714 -107436633 + AluY SINE Alu 1 302 -9 2731 22 0 6 chr4 94892422 94892734 -107435613 - AluYa5 SINE Alu -1 310 1 354 221 105 0 chr4 94893071 94893157 -107435190 - L2 LINE L2 -2 3270 3176 224 283 117 33 chr4 94893225 94893345 -107435002 + L2 LINE L2 3143 3272 0 694 257 98 39 chr4 94893636 94893943 -107434404 - MLT2C1 LTR ERVL -65 332 8 891 211 12 0 chr4 94893957 94894123 -107434224 + FAM SINE Alu 1 168 -7 401 261 56 21 chr4 94894131 94894273 -107434074 - MIR SINE MIR 0 262 116 22 35 0 0 chr4 94895100 94895129 -107433218 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr4 94895246 94895270 -107433077 + AT_rich Low_complexity Low_complexity 1 24 0 2088 121 0 0 chr4 94896340 94896621 -107431726 - AluSc SINE Alu -20 289 9 355 82 0 0 chr4 94896621 94896670 -107431677 - Alu SINE Alu -251 51 3 1484 112 0 5 chr4 94896685 94896891 -107431456 - AluSg/x SINE Alu -9 301 97 1835 203 2 12 chr4 94896891 94897304 -107431043 - Tigger6 DNA MER2_type -1184 413 5 247 259 0 25 chr4 94897318 94897399 -107430948 + L1ME3A LINE L1 5391 5469 -2526 1750 208 75 66 chr4 94897492 94898040 -107430307 + MLT1E2 LTR MaLR 74 626 0 1426 253 54 63 chr4 94898059 94898473 -107429874 + L1ME3A LINE L1 5477 5893 -277 2110 114 10 7 chr4 94898473 94898771 -107429576 + AluSc SINE Alu 1 299 -10 2211 100 7 7 chr4 94898772 94899082 -107429265 + AluSg SINE Alu 1 310 0 1426 253 54 63 chr4 94899082 94899330 -107429017 + L1ME3A LINE L1 5892 6135 -35 214 213 22 0 chr4 94899392 94899441 -107428906 - MIR SINE MIR -84 124 54 23 33 0 0 chr4 94900121 94900151 -107428196 + AT_rich Low_complexity Low_complexity 1 30 0 387 0 0 0 chr4 94900892 94900935 -107427412 + (CA)n Simple_repeat Simple_repeat 2 44 0 1101 175 58 0 chr4 94901189 94901412 -107426935 - MER46A DNA MER2_type 0 236 1 346 236 34 91 chr4 94901799 94902007 -107426340 - MLT1K LTR MaLR -8 580 385 183 42 0 0 chr4 94902130 94902154 -107426193 + (A)n Simple_repeat Simple_repeat 1 24 0 827 205 12 18 chr4 94902657 94902823 -107425524 + FRAM SINE Alu 2 166 0 2230 108 3 7 chr4 94903061 94903356 -107424991 + AluSq SINE Alu 1 294 -19 1334 115 107 4 chr4 94904152 94904395 -107423952 + L1PB4 LINE L1 5709 5976 -180 28 0 0 0 chr4 94904731 94904759 -107423588 + AT_rich Low_complexity Low_complexity 1 28 0 1617 86 0 0 chr4 94905326 94905523 -107422824 + AluSc SINE Alu 99 295 -14 216 291 0 0 chr4 94905595 94905650 -107422697 - L2 LINE L2 -247 3066 3012 665 224 40 17 chr4 94905872 94906046 -107422301 - MER63A DNA MER1_type -26 184 7 212 290 0 0 chr4 94906086 94906148 -107422199 - L2 LINE L2 -702 2612 2551 328 269 60 27 chr4 94907299 94907389 -107420958 + MER69A DNA AcHobo 23 121 -2405 429 54 0 0 chr4 94907389 94907445 -107420902 + (TG)n Simple_repeat Simple_repeat 2 57 0 328 269 60 27 chr4 94907445 94907503 -107420844 + MER69A DNA AcHobo 121 176 -1 238 363 0 0 chr4 94907510 94907590 -107420757 + MER115 DNA AcHobo 5 84 -609 249 281 83 33 chr4 94908716 94908837 -107419510 + MIR SINE MIR 122 248 -14 26 74 0 0 chr4 94909250 94909304 -107419043 + AT_rich Low_complexity Low_complexity 1 54 0 415 287 77 14 chr4 94909920 94910063 -107418284 - MIR SINE MIR -27 235 84 2365 102 0 0 chr4 94910096 94910400 -107417947 - AluSg SINE Alu 0 310 7 40938 51 2 1 chr4 94910744 94916891 -107411456 - L1PA4 LINE L1 0 6155 1 2130 120 0 42 chr4 94916900 94917257 -107411090 - L1PA13 LINE L1 -8 6155 5814 346 276 50 65 chr4 94917909 94918170 -107410177 + MLT1L LTR MaLR 124 380 -235 2215 105 0 0 chr4 94918293 94918579 -107409768 - AluSx SINE Alu -26 286 1 209 404 27 7 chr4 94918833 94918979 -107409368 + L2 LINE L2 3160 3308 -5 201 39 0 0 chr4 94919007 94919033 -107409314 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1975 118 15 0 chr4 94919035 94919307 -107409040 - AluSc SINE Alu -33 276 1 2043 101 0 21 chr4 94919535 94919854 -107408493 - AluSx SINE Alu 0 314 2 20582 55 3 0 chr4 94920892 94924309 -107404038 - L1PA5 LINE L1 -4 6150 2729 11929 68 2 2 chr4 94924309 94925895 -107402452 + L1PA5 LINE L1 1165 2750 -3396 2313 83 17 3 chr4 94928064 94928365 -107399982 + AluSc SINE Alu 1 305 -4 408 37 0 0 chr4 94929317 94929371 -107398976 - AluSp/q SINE Alu -16 297 244 1616 168 0 84 chr4 94929419 94929788 -107398559 - MER44D DNA MER2_type -1 608 1 390 162 0 0 chr4 94930458 94930532 -107397815 + (TG)n Simple_repeat Simple_repeat 1 74 0 1515 203 10 0 chr4 94931708 94931998 -107396349 - AluSx SINE Alu -19 293 1 219 114 0 0 chr4 94932081 94932116 -107396231 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1880 160 123 21 chr4 94933478 94933859 -107394488 - MSTA LTR MaLR -8 420 1 2226 192 30 48 chr4 94933954 94934615 -107393732 - MER66-int LTR ERV1 -2700 2180 1519 1090 212 78 51 chr4 94934648 94934781 -107393566 - MER66-int LTR ERV1 -2505 4171 4043 2993 38 5 0 chr4 94934781 94935148 -107393199 - L1PA4 LINE L1 0 6155 5787 1090 212 78 51 chr4 94935148 94935599 -107392748 - MER66-int LTR ERV1 -2633 4043 1646 1347 191 22 11 chr4 94935603 94935876 -107392471 - MER66-int LTR ERV1 -282 1504 1229 633 175 58 0 chr4 94935885 94936005 -107392342 - MER66-int LTR ERV1 -5248 1428 1302 1647 190 75 115 chr4 94936042 94936685 -107391662 - MER66-int LTR ERV1 -5527 1149 533 1906 192 24 29 chr4 94936893 94937305 -107391042 - MER41B LTR ERV1 -144 491 82 195 317 37 0 chr4 94937414 94937496 -107390851 + L2 LINE L2 3186 3270 -2 2029 143 0 7 chr4 94937848 94938155 -107390192 + AluSx SINE Alu 1 305 -7 28 29 0 0 chr4 94939268 94939303 -107389044 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr4 94940118 94940155 -107388192 + AT_rich Low_complexity Low_complexity 1 37 0 1350 259 126 88 chr4 94942308 94942506 -107385841 - L2 LINE L2 -1165 2149 1960 2249 110 0 0 chr4 94942506 94942805 -107385542 + AluSc SINE Alu 3 301 -8 1350 259 126 88 chr4 94942805 94943035 -107385312 - L2 LINE L2 -1354 1960 1740 275 149 0 0 chr4 94943035 94943082 -107385265 - U5 snRNA snRNA -69 47 1 1350 259 126 88 chr4 94943082 94943421 -107384926 - L2 LINE L2 -1574 1740 1304 438 309 115 12 chr4 94943434 94943677 -107384670 + Charlie2 DNA MER1_type 32 299 -2563 776 234 100 75 chr4 94943704 94944212 -107384135 + Charlie2 DNA MER1_type 1887 2407 -455 1326 302 57 100 chr4 94944403 94945533 -107382814 - L2 LINE L2 -2007 1307 227 2029 106 39 0 chr4 94945972 94946254 -107382093 - AluSg SINE Alu -17 293 1 566 239 86 59 chr4 94946698 94946953 -107381394 - MIR SINE MIR 0 262 1 244 356 139 58 chr4 94947024 94947333 -107381014 - L2 LINE L2 -5 3267 2934 295 341 105 39 chr4 94947385 94947746 -107380601 - LTR33 LTR ERVL -11 510 126 546 326 192 44 chr4 94947863 94948074 -107380273 - L2 LINE L2 -500 2814 2636 2330 117 17 0 chr4 94948074 94948434 -107379913 - MER47A DNA MER2_type 0 366 1 546 326 192 44 chr4 94948434 94948863 -107379484 - L2 LINE L2 -678 2636 2079 180 302 48 0 chr4 94948877 94948940 -107379407 - MIR SINE MIR -48 214 149 312 27 0 0 chr4 94950249 94950286 -107378061 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 320 238 48 79 chr4 94950287 94950413 -107377934 - L2 LINE L2 -30 3283 3162 363 338 160 9 chr4 94951048 94951273 -107377074 + MIR SINE MIR 4 262 0 29 106 0 0 chr4 94951300 94951413 -107376934 + AT_rich Low_complexity Low_complexity 1 113 0 354 219 74 75 chr4 94951893 94952015 -107376332 + FLAM_A SINE Alu 2 114 -19 295 353 188 28 chr4 94952959 94953667 -107374680 + L2 LINE L2 1966 2786 -528 214 333 0 0 chr4 94953923 94953986 -107374361 + L2 LINE L2 3245 3307 -6 223 350 134 10 chr4 94954217 94954411 -107373936 - MIR SINE MIR -15 247 30 2250 107 0 0 chr4 94955558 94955867 -107372480 - AluSc SINE Alu 0 309 1 1280 193 16 4 chr4 94956870 94957124 -107371223 - AluJo SINE Alu -55 257 1 207 286 176 11 chr4 94957481 94957572 -107370775 + MIR SINE MIR 32 137 -125 4987 64 43 0 chr4 94957588 94958245 -107370102 - L1PA7 LINE L1 -3 6151 5467 2064 88 16 3 chr4 94958245 94958613 -107369734 + L1PA7 LINE L1 5103 5473 -681 1789 165 0 46 chr4 94960389 94960716 -107367631 - AluSx SINE Alu 0 312 1 30 27 0 0 chr4 94961111 94961148 -107367199 + AT_rich Low_complexity Low_complexity 1 37 0 259 366 24 16 chr4 94961282 94961405 -107366942 - L2 LINE L2 -12 3260 3137 3027 144 26 4 chr4 94961504 94962004 -107366343 - MER41E LTR ERV1 0 512 2 183 156 0 0 chr4 94962939 94962971 -107365376 + (CATA)n Simple_repeat Simple_repeat 4 35 0 238 295 211 71 chr4 94963296 94963676 -107364671 + L2 LINE L2 1692 2124 -1190 486 248 70 0 chr4 94963706 94963835 -107364512 - MER58B DNA MER1_type -8 333 196 2414 52 3 16 chr4 94964271 94964581 -107363766 - AluY SINE Alu -5 306 1 189 211 0 0 chr4 94964968 94965020 -107363327 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 2364 67 0 0 chr4 94965315 94965613 -107362734 - AluY SINE Alu -11 300 3 432 0 0 0 chr4 94965628 94965676 -107362671 + (TG)n Simple_repeat Simple_repeat 1 48 0 430 172 249 6 chr4 94966066 94966211 -107362136 + MER5A DNA MER1_type 4 189 0 27 29 0 0 chr4 94966320 94966354 -107361993 + AT_rich Low_complexity Low_complexity 1 34 0 754 196 0 0 chr4 94966489 94966622 -107361725 + AluJb SINE Alu 1 133 -179 294 228 152 0 chr4 94966809 94966901 -107361446 + L2 LINE L2 3191 3296 -17 2276 95 0 16 chr4 94967203 94967520 -107360827 - AluSx SINE Alu 0 312 1 192 356 40 10 chr4 94967873 94967974 -107360373 + MIR SINE MIR 43 146 -62 327 328 45 35 chr4 94968123 94968522 -107359825 - HAL1b LINE L1 -887 461 59 24 0 0 0 chr4 94970049 94970073 -107358274 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr4 94970109 94970145 -107358202 + AT_rich Low_complexity Low_complexity 1 36 0 793 191 26 10 chr4 94970289 94970483 -107357864 + Charlie4 DNA MER1_type 1764 1960 -1 260 295 158 0 chr4 94970483 94970578 -107357769 + L2 LINE L2 3187 3296 -17 271 287 198 0 chr4 94970738 94970839 -107357508 + L2 LINE L2 3188 3308 -5 415 292 159 22 chr4 94971874 94972100 -107356247 + MIR SINE MIR 6 262 0 213 301 0 2 chr4 94972654 94972722 -107355625 + MIR SINE MIR 86 153 -55 23 0 0 0 chr4 94973213 94973236 -107355111 + AT_rich Low_complexity Low_complexity 1 23 0 670 231 90 41 chr4 94975080 94975348 -107352999 - LTR40b LTR ERVL -7 455 175 1506 249 31 75 chr4 94975458 94976004 -107352343 - MER77 LTR ERV1 -5 600 79 297 216 172 52 chr4 94976113 94976229 -107352118 - LTR40a LTR ERVL -389 130 1 24 0 0 0 chr4 94976612 94976636 -107351711 + AT_rich Low_complexity Low_complexity 1 24 0 365 250 19 19 chr4 94977020 94977128 -107351219 - MER103 DNA DNA 0 166 59 185 83 28 0 chr4 94978405 94978441 -107349906 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 261 222 0 0 chr4 94979916 94979979 -107348368 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 181 391 20 53 chr4 94980073 94980224 -107348123 - MER5A DNA MER1_type -40 149 4 278 130 0 0 chr4 94981933 94981979 -107346368 + L1MA9 LINE L1 6262 6307 -5 261 0 0 0 chr4 94982864 94982893 -107345454 + (TC)n Simple_repeat Simple_repeat 2 30 0 195 42 0 0 chr4 94982892 94982916 -107345431 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 400 284 74 47 chr4 94982916 94982995 -107345352 + L2 LINE L2 3121 3196 -76 1096 181 17 125 chr4 94982995 94983404 -107344943 - MLT1A1 LTR MaLR 0 365 1 400 284 74 47 chr4 94983404 94983472 -107344875 + L2 LINE L2 3196 3272 0 1490 195 8 4 chr4 94983682 94983944 -107344403 - AluSq SINE Alu -50 263 1 2098 103 14 10 chr4 94984163 94984455 -107343892 - AluSc SINE Alu -16 293 1 267 274 24 16 chr4 94985188 94985268 -107343079 + L1ME LINE L1 5682 5765 -356 1562 192 3 29 chr4 94985268 94985581 -107342766 + AluJo SINE Alu 3 307 -5 267 274 24 16 chr4 94985581 94985624 -107342723 + L1ME LINE L1 5765 5806 -315 2097 148 78 22 chr4 94987617 94988028 -107340319 - Tigger2a DNA MER2_type 0 434 1 252 170 0 0 chr4 94988028 94988081 -107340266 + (TA)n Simple_repeat Simple_repeat 1 53 0 183 300 0 0 chr4 94989800 94989840 -107338507 - L2 LINE L2 -23 3249 3210 213 193 123 0 chr4 94990200 94990257 -107338090 - MIR SINE MIR -173 89 26 694 272 88 67 chr4 94990452 94990726 -107337621 - LTR16A LTR ERVL -32 418 151 1859 128 44 7 chr4 94990726 94991023 -107337324 + AluJb SINE Alu 1 308 -4 594 235 15 8 chr4 94991025 94991157 -107337190 + FLAM_A SINE Alu 1 133 0 694 272 88 67 chr4 94991157 94991221 -107337126 - LTR16A LTR ERVL -299 151 70 26 0 0 0 chr4 94991811 94991837 -107336510 + AT_rich Low_complexity Low_complexity 1 26 0 2273 100 0 6 chr4 94993093 94993404 -107334943 + AluSq SINE Alu 1 309 -4 194 0 39 0 chr4 94993717 94993743 -107334604 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1800 171 0 0 chr4 94993745 94994025 -107334322 - AluJb SINE Alu -32 280 1 26 0 0 0 chr4 94994029 94994055 -107334292 + AT_rich Low_complexity Low_complexity 1 26 0 181 51 51 51 chr4 94994256 94994295 -107334052 + T-rich Low_complexity Low_complexity 3 41 0 2198 108 0 0 chr4 94994301 94994597 -107333750 - AluSc SINE Alu -13 296 1 3712 184 26 0 chr4 94994600 94995327 -107333020 - L1MA6 LINE L1 -258 7461 6716 401 211 0 0 chr4 94995345 94995416 -107332931 - AluJ/FRAM SINE Alu -19 293 223 699 165 8 8 chr4 94995419 94995540 -107332807 - AluJo/FLAM SINE Alu -189 123 3 12448 196 48 35 chr4 94995541 94997052 -107331295 - L1MA6 LINE L1 -821 6744 5254 1774 119 58 41 chr4 94997052 94997345 -107331002 - AluSx SINE Alu -14 298 1 12448 196 48 35 chr4 94997345 94997791 -107330556 - L1MA6 LINE L1 -2311 5254 4815 2530 47 0 0 chr4 94997791 94998089 -107330258 - AluY SINE Alu -13 298 1 12448 196 48 35 chr4 94998089 94998495 -107329852 - L1MA6 LINE L1 -2750 4815 4416 1973 103 53 0 chr4 94998495 94998777 -107329570 - AluSp SINE Alu -16 297 1 1727 173 7 20 chr4 94998782 94999082 -107329265 - AluJb SINE Alu -4 308 13 12448 196 48 35 chr4 94999082 94999947 -107328400 - L1MA6 LINE L1 -3152 4413 3464 1952 99 62 17 chr4 94999947 95000239 -107328108 - AluSx SINE Alu -7 305 1 12448 196 48 35 chr4 95000239 95000427 -107327920 - L1MA6 LINE L1 -4101 3464 3280 611 384 22 26 chr4 95000579 95001069 -107327278 + L1PA13 LINE L1 97 584 -6203 4789 147 8 18 chr4 95002127 95002956 -107325391 + L1PA16 LINE L1 5346 6166 0 2361 268 91 24 chr4 95002993 95003762 -107324585 - L1MA6 LINE L1 -4332 3233 2360 198 0 0 0 chr4 95003762 95003784 -107324563 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2361 268 91 24 chr4 95003784 95004163 -107324184 - L1MA6 LINE L1 -5205 2360 2008 1515 297 73 12 chr4 95004234 95004890 -107323457 - L1MA6 LINE L1 -6320 1169 474 23 0 0 0 chr4 95005209 95005232 -107323115 + AT_rich Low_complexity Low_complexity 1 23 0 2844 16 0 0 chr4 95005440 95005756 -107322591 - AluYb8 SINE Alu -2 316 1 336 356 10 0 chr4 95005794 95005895 -107322452 + L2 LINE L2 3156 3257 -15 35 0 0 0 chr4 95005897 95005932 -107322415 + AT_rich Low_complexity Low_complexity 1 35 0 1531 216 43 38 chr4 95006339 95006733 -107321614 - MSTD LTR MaLR 0 396 1 348 268 189 25 chr4 95006979 95007371 -107320976 - HAL1 LINE L1 -931 1576 1121 5025 178 25 15 chr4 95007389 95008405 -107319942 - L1MC1 LINE L1 0 6333 5308 2069 215 6 43 chr4 95008403 95008892 -107319455 - L1MCa LINE L1 -5955 471 1 * 25 51 0 0 chr4 95008981 95009020 -107319327 + AT_rich Low_complexity Low_complexity 1 39 0 1151 255 74 48 chr4 95009355 95009944 -107318403 - MLT1D LTR MaLR 0 505 7 25 31 0 0 chr4 95010006 95010038 -107318309 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr4 95010219 95010247 -107318100 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr4 95010256 95010287 -107318060 + AT_rich Low_complexity Low_complexity 1 31 0 328 366 0 0 chr4 95011421 95011522 -107316825 + MIR SINE MIR 32 132 -130 1262 220 53 95 chr4 95011524 95011902 -107316445 - MER77 LTR ERV1 -241 364 3 189 121 0 0 chr4 95012688 95012721 -107315626 + (TG)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr4 95012743 95012765 -107315582 + AT_rich Low_complexity Low_complexity 1 22 0 549 226 148 78 chr4 95013291 95013534 -107314813 - MER77 LTR ERV1 -343 262 3 2188 99 3 0 chr4 95014360 95014654 -107313693 - AluSx SINE Alu -17 295 1 1442 211 85 85 chr4 95015210 95015832 -107312515 + MLT1E3 LTR MaLR 2 623 -1 1025 255 33 15 chr4 95016066 95016500 -107311847 + L1ME LINE L1 5141 5588 -576 220 328 69 15 chr4 95017026 95017157 -107311190 - MIR SINE MIR 0 262 125 1501 168 141 7 chr4 95017227 95017524 -107310823 + MER1B DNA MER1_type 1 337 -2 811 201 61 30 chr4 95017580 95017843 -107310504 - LTR37B LTR ERV1 0 468 198 1885 213 68 27 chr4 95018027 95018510 -107309837 + MLT1D LTR MaLR 1 503 -2 1617 105 5 0 chr4 95018519 95018738 -107309609 + AluSc SINE Alu 1 220 -89 3691 183 48 4 chr4 95019040 95019766 -107308581 - Tigger1 DNA MER2_type 0 2418 1661 255 133 0 0 chr4 95019770 95019815 -107308532 - Tigger1 DNA MER2_type -1609 809 765 * 1798 130 48 39 chr4 95019812 95020143 -107308204 + THE1B LTR MaLR 29 362 -2 27 62 0 0 chr4 95020525 95020573 -107307774 + AT_rich Low_complexity Low_complexity 1 48 0 1824 159 0 26 chr4 95021180 95021482 -107306865 + AluSx SINE Alu 1 294 -18 2164 118 0 0 chr4 95021486 95021782 -107306565 + AluSq SINE Alu 1 296 -17 5213 117 19 0 chr4 95021782 95022566 -107305781 - L1P LINE L1 -1289 4857 4059 * 5407 90 3 0 chr4 95022559 95023295 -107305052 + L1PA8 LINE L1 5328 6065 -107 5976 95 2 0 chr4 95022566 95023393 -107304954 + L1PA8 LINE L1 5328 6163 -9 1748 108 11 56 chr4 95024478 95024814 -107303533 - MER51B LTR ERV1 0 377 2 402 342 17 0 chr4 95025021 95025141 -107303206 + L2 LINE L2 3138 3259 -13 180 313 30 15 chr4 95025081 95025148 -107303199 + MIR SINE MIR 194 261 -1 * 22 56 0 0 chr4 95026156 95026192 -107302155 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr4 95026978 95027001 -107301346 + AT_rich Low_complexity Low_complexity 1 23 0 642 257 38 22 chr4 95027125 95027308 -107301039 - MER5A DNA MER1_type -2 187 2 22 103 0 0 chr4 95027414 95027492 -107300855 + AT_rich Low_complexity Low_complexity 1 78 0 22 56 0 0 chr4 95027933 95027969 -107300378 + AT_rich Low_complexity Low_complexity 1 36 0 493 244 77 0 chr4 95028570 95028726 -107299621 - L1MA10 LINE L1 0 6334 6167 3826 198 47 52 chr4 95028740 95029459 -107298888 - L1MA9 LINE L1 -38 6274 5560 1071 36 15 0 chr4 95029459 95029596 -107298751 - L1PA4 LINE L1 0 6155 6017 3826 198 47 52 chr4 95029596 95029871 -107298476 - L1MA9 LINE L1 -752 5560 5285 2150 273 50 24 chr4 95029986 95030360 -107297987 - L1M2a LINE L1 -6477 691 290 1576 173 54 40 chr4 95030360 95030730 -107297617 + THE1C LTR MaLR 1 375 0 2150 273 50 24 chr4 95030730 95031028 -107297319 - L1M2a LINE L1 -6878 290 1 2233 237 84 11 chr4 95031028 95031826 -107296521 - L1ME1 LINE L1 -136 6030 5177 2049 244 96 7 chr4 95031821 95032472 -107295875 - L1ME1 LINE L1 -1407 4739 4013 * 201 74 0 0 chr4 95032472 95032499 -107295848 + (TG)n Simple_repeat Simple_repeat 2 28 0 2049 244 96 7 chr4 95032499 95032589 -107295758 - L1ME1 LINE L1 -2133 4013 3932 2036 255 86 29 chr4 95032649 95033625 -107294722 - L1ME1 LINE L1 -2905 3241 2210 446 308 99 64 chr4 95033796 95034132 -107294215 - LTR40a LTR ERVL -60 402 114 250 250 42 14 chr4 95034214 95034286 -107294061 - LTR40a LTR ERVL -445 74 1 440 261 55 18 chr4 95034799 95034964 -107293383 - L1MC/D LINE L1 -2081 5727 5557 404 336 78 37 chr4 95035201 95035418 -107292929 - MIR SINE MIR -17 245 20 462 293 34 67 chr4 95035525 95035733 -107292614 + MIR SINE MIR 21 221 -41 2686 164 59 61 chr4 95035768 95036522 -107291825 + LTR12 LTR ERV1 31 583 -131 841 223 132 35 chr4 95037407 95037717 -107290630 - MER7A DNA MER2_type -2 344 7 2487 151 62 5 chr4 95038535 95038972 -107289375 - MLT1C LTR MaLR -2 465 4 612 266 58 21 chr4 95039348 95039536 -107288811 - MLT1E1 LTR MaLR -73 581 387 677 157 41 8 chr4 95039653 95039774 -107288573 - MLT1E1 LTR MaLR -523 131 7 25 31 0 0 chr4 95040317 95040349 -107287998 + AT_rich Low_complexity Low_complexity 1 32 0 2317 57 0 3 chr4 95041159 95041492 -107286855 + AluY SINE Alu 1 332 0 2001 110 3 64 chr4 95042060 95042387 -107285960 - AluSq SINE Alu -6 307 1 228 211 41 32 chr4 95042882 95043005 -107285342 + (TA)n Simple_repeat Simple_repeat 1 124 0 563 284 8 0 chr4 95044483 95044617 -107283730 - MER45A DNA AcHobo 0 178 44 713 88 0 0 chr4 95044754 95044845 -107283502 - Tigger1 DNA MER2_type -845 1573 1483 13507 137 49 12 chr4 95045130 95047460 -107280887 + Tigger1 DNA MER2_type 3 2418 0 1869 149 0 13 chr4 95047589 95047872 -107280475 + AluSx SINE Alu 3 283 -29 504 0 0 0 chr4 95047872 95047928 -107280419 + (CA)n Simple_repeat Simple_repeat 1 56 0 1869 149 0 13 chr4 95047928 95047945 -107280402 + AluSx SINE Alu 283 299 -13 203 235 59 0 chr4 95048121 95048172 -107280175 + MIR SINE MIR 17 70 -192 24 0 0 0 chr4 95051285 95051309 -107277038 + AT_rich Low_complexity Low_complexity 1 24 0 225 279 51 13 chr4 95051343 95051422 -107276925 - L3b LINE CR1 -209 1374 1293 222 308 214 8 chr4 95051478 95051595 -107276752 + MIR3 SINE MIR 21 161 -47 228 206 0 95 chr4 95051655 95051718 -107276629 - L2 LINE L2 -48 3224 3168 237 252 46 84 chr4 95051837 95051968 -107276379 - MLT1L LTR MaLR -5 610 485 1860 146 0 28 chr4 95051986 95052307 -107276040 - AluSx SINE Alu 0 312 1 345 221 68 46 chr4 95052609 95052959 -107275388 - L1MCc LINE L1 -4887 1536 1376 495 317 50 55 chr4 95053399 95053458 -107274889 - L2 LINE L2 -236 3077 3019 5806 46 4 1 chr4 95053458 95054182 -107274165 - L1PA5 LINE L1 -1 6153 5428 495 317 50 55 chr4 95054182 95054212 -107274135 - L2 LINE L2 -294 3019 2990 2305 74 0 23 chr4 95054212 95054522 -107273825 - AluY SINE Alu -8 303 1 495 317 50 55 chr4 95054522 95054743 -107273604 - L2 LINE L2 -323 2990 2765 22 35 0 0 chr4 95057236 95057265 -107271082 + AT_rich Low_complexity Low_complexity 1 29 0 811 279 9 5 chr4 95057834 95058053 -107270294 + MIR SINE MIR 43 262 0 400 295 9 0 chr4 95058169 95058274 -107270073 + MIR SINE MIR 157 262 0 25 0 0 0 chr4 95058464 95058489 -107269858 + AT_rich Low_complexity Low_complexity 1 25 0 26 64 0 0 chr4 95058587 95058634 -107269713 + AT_rich Low_complexity Low_complexity 1 47 0 954 92 0 0 chr4 95058895 95059015 -107269332 + AluY SINE Alu 9 128 -183 454 113 0 0 chr4 95059015 95059086 -107269261 + Alu SINE Alu 234 304 -8 416 316 30 18 chr4 95059468 95059636 -107268711 + MIR3 SINE MIR 36 205 -3 2260 123 31 17 chr4 95060469 95060828 -107267519 - THE1B LTR MaLR 0 364 1 1142 228 123 15 chr4 95060919 95061310 -107267037 - MER63B DNA MER1_type -2 434 2 24 0 0 0 chr4 95061582 95061606 -107266741 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr4 95061979 95062002 -107266345 + AT_rich Low_complexity Low_complexity 1 23 0 2267 67 0 0 chr4 95062058 95062382 -107265965 - AluY SINE Alu 0 324 1 1856 148 97 6 chr4 95062897 95063228 -107265119 + MER46B DNA MER2_type 1 236 0 30 45 0 0 chr4 95063652 95063696 -107264651 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr4 95065237 95065259 -107263088 + AT_rich Low_complexity Low_complexity 1 22 0 2926 284 116 16 chr4 95066045 95066836 -107261511 + L1M4 LINE L1 2259 2970 -3176 1340 149 41 0 chr4 95066836 95067104 -107261243 + L1MA4 LINE L1 6017 6295 -5 2926 284 116 16 chr4 95067104 95068195 -107260152 + L1M4 LINE L1 2970 4314 -1832 1736 246 68 27 chr4 95068196 95068709 -107259638 - MLT1F LTR MaLR -6 536 3 295 263 20 30 chr4 95068721 95068820 -107259527 - MLT1F-int LTR MaLR -30 1341 1244 225 303 61 48 chr4 95069076 95069241 -107259106 - MLT1F-int LTR MaLR -487 884 718 28 29 0 0 chr4 95069409 95069444 -107258903 + AT_rich Low_complexity Low_complexity 1 35 0 252 276 0 0 chr4 95069454 95069512 -107258835 + L1ME2 LINE L1 6063 6120 -44 351 286 131 30 chr4 95070031 95070230 -107258117 + MIR SINE MIR 3 221 -41 185 108 27 0 chr4 95070365 95070402 -107257945 + (TA)n Simple_repeat Simple_repeat 2 39 0 40 49 0 0 chr4 95070474 95070535 -107257812 + AT_rich Low_complexity Low_complexity 1 61 0 907 319 145 18 chr4 95070694 95071315 -107257032 - L2 LINE L2 -703 2611 1912 375 285 8 73 chr4 95071713 95071744 -107256603 + MIR SINE MIR 3 34 -228 2096 125 23 49 chr4 95071744 95072129 -107256218 + THE1C LTR MaLR 1 375 0 375 285 8 73 chr4 95072129 95072220 -107256127 + MIR SINE MIR 34 117 -145 23 33 0 0 chr4 95072321 95072351 -107255996 + AT_rich Low_complexity Low_complexity 1 30 0 1580 162 7 61 chr4 95073751 95074048 -107254299 + AluJo SINE Alu 6 286 -26 180 77 0 0 chr4 95074048 95074074 -107254273 + (CATA)n Simple_repeat Simple_repeat 2 27 0 733 227 49 11 chr4 95074342 95074527 -107253820 - MER58A DNA MER1_type -1 223 32 569 314 100 5 chr4 95074613 95074833 -107253514 + MIR SINE MIR 22 262 0 1755 149 97 0 chr4 95075313 95075642 -107252705 - MER46B DNA MER2_type 0 236 1 2257 106 34 42 chr4 95075648 95075989 -107252358 - L1PA10 LINE L1 0 6168 5829 2155 131 0 0 chr4 95075989 95076294 -107252053 + AluSq SINE Alu 1 305 -8 2257 106 34 42 chr4 95076294 95076330 -107252017 - L1PA10 LINE L1 -339 5829 5794 752 117 0 8 chr4 95079407 95079535 -107248812 + (GAAA)n Simple_repeat Simple_repeat 3 129 0 1800 161 104 3 chr4 95079654 95080008 -107248339 + MLT1B LTR MaLR 1 390 0 1585 224 19 16 chr4 95080520 95080890 -107247457 + MLT1A2 LTR MaLR 4 374 0 888 115 31 0 chr4 95081014 95081144 -107247203 + AluSg1 SINE Alu 1 134 -175 2023 101 0 7 chr4 95081144 95081446 -107246901 + AluSg SINE Alu 21 310 0 522 304 13 25 chr4 95082093 95082251 -107246096 + MIR SINE MIR 2 157 -105 3764 66 6 2 chr4 95082400 95082888 -107245459 + L1PA7 LINE L1 5665 6154 0 1160 266 62 58 chr4 95082890 95083307 -107245040 + LTR40a LTR ERVL 97 515 -4 22 35 0 0 chr4 95083341 95083370 -107244977 + AT_rich Low_complexity Low_complexity 1 29 0 2805 146 115 31 chr4 95083654 95084228 -107244119 + LTR29 LTR ERV1 1 622 0 25 0 0 0 chr4 95084715 95084740 -107243607 + AT_rich Low_complexity Low_complexity 1 25 0 1862 140 184 11 chr4 95084990 95085355 -107242992 - MSTA LTR MaLR 0 428 1 24 0 0 0 chr4 95086032 95086056 -107242291 + AT_rich Low_complexity Low_complexity 1 24 0 22 80 0 0 chr4 95086143 95086193 -107242154 + AT_rich Low_complexity Low_complexity 1 50 0 523 279 65 33 chr4 95087423 95088046 -107240301 - L1MDb LINE L1 -3569 3075 2463 270 289 12 0 chr4 95088253 95088336 -107240011 - L1MDb LINE L1 -4642 2183 2100 292 275 65 47 chr4 95088632 95088950 -107239397 - L1MDb LINE L1 -4955 1587 1321 1919 164 3 3 chr4 95089011 95089322 -107239025 + AluSx SINE Alu 1 311 -1 262 309 236 0 chr4 95090485 95090650 -107237697 + MIR SINE MIR 17 220 -42 220 274 0 0 chr4 95090679 95090730 -107237617 + (CACCAT)n Simple_repeat Simple_repeat 6 56 0 21 36 0 0 chr4 95090933 95090961 -107237386 + AT_rich Low_complexity Low_complexity 1 28 0 908 144 77 0 chr4 95091007 95091188 -107237159 - L1PB4 LINE L1 -691 5465 5271 2585 133 14 18 chr4 95091199 95091642 -107236705 + L1PB4 LINE L1 5475 5915 -241 197 233 190 17 chr4 95092048 95092164 -107236183 + MIR SINE MIR 116 251 -11 268 290 12 86 chr4 95092596 95092859 -107235488 + L3b LINE CR1 1112 1437 -146 21 0 0 0 chr4 95093094 95093115 -107235232 + AT_rich Low_complexity Low_complexity 1 21 0 2152 114 3 0 chr4 95093178 95093486 -107234861 - AluY SINE Alu -2 309 1 24 0 0 0 chr4 95093879 95093903 -107234444 + AT_rich Low_complexity Low_complexity 1 24 0 310 341 67 7 chr4 95094424 95094559 -107233788 - MIR SINE MIR -72 190 48 654 197 54 27 chr4 95094690 95094837 -107233510 - FRAM SINE Alu -25 151 1 27 49 0 0 chr4 95095707 95095748 -107232599 + AT_rich Low_complexity Low_complexity 1 41 0 2135 105 3 0 chr4 95095808 95096093 -107232254 + AluSp SINE Alu 1 286 -27 2375 73 7 0 chr4 95096509 95096810 -107231537 - AluY SINE Alu -8 303 1 194 365 0 0 chr4 95096830 95096893 -107231454 - L2 LINE L2 -336 2977 2915 1708 223 38 91 chr4 95096904 95097562 -107230785 - MLT1E2 LTR MaLR -1 625 3 234 382 87 24 chr4 95097841 95098095 -107230252 - L2 LINE L2 -2889 425 156 628 255 109 16 chr4 95098329 95098513 -107229834 + MIR SINE MIR 2 202 -60 3344 67 2 0 chr4 95098541 95098974 -107229373 - L1PA7 LINE L1 -8 6146 5713 320 252 264 16 chr4 95100225 95100471 -107227876 + L1ME4a LINE L1 5809 6115 -6 1302 223 68 31 chr4 95101440 95101822 -107226525 - LTR16A1 LTR ERVL 0 457 62 26 0 0 0 chr4 95101974 95102000 -107226347 + AT_rich Low_complexity Low_complexity 1 26 0 8370 139 30 11 chr4 95102066 95104374 -107223973 - Tigger1 DNA MER2_type 0 2418 7 2954 185 88 12 chr4 95104778 95105438 -107222909 - MER67C LTR ERV1 0 710 1 24 77 0 0 chr4 95105785 95105837 -107222510 + AT_rich Low_complexity Low_complexity 1 52 0 641 274 38 56 chr4 95106170 95106436 -107221911 + MIR SINE MIR 2 262 0 234 62 0 0 chr4 95106825 95106857 -107221490 + (T)n Simple_repeat Simple_repeat 1 32 0 209 0 0 143 chr4 95106873 95106915 -107221432 + (T)n Simple_repeat Simple_repeat 1 36 0 360 298 19 19 chr4 95106915 95107180 -107221167 - L1HS LINE L1 0 6155 5891 42971 29 21 1 chr4 95107280 95113279 -107215068 - L1HS LINE L1 -32 6123 1 290 274 34 75 chr4 95113985 95114131 -107214216 - MLT1I LTR MaLR 0 409 270 30 59 0 0 chr4 95114353 95114404 -107213943 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr4 95114656 95114684 -107213663 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 95115202 95115226 -107213121 + AT_rich Low_complexity Low_complexity 1 24 0 188 290 210 0 chr4 95115800 95115924 -107212423 + MIR SINE MIR 100 249 -13 1956 114 50 53 chr4 95116184 95116545 -107211802 + THE1B LTR MaLR 1 360 -4 227 293 160 27 chr4 95116643 95116831 -107211516 - MLT1L LTR MaLR -95 520 308 226 245 20 0 chr4 95119820 95119869 -107208478 + (TG)n Simple_repeat Simple_repeat 2 51 0 652 306 27 15 chr4 95121136 95121397 -107206950 - LTR16A1 LTR ERVL -5 452 189 374 316 138 6 chr4 95122455 95122629 -107205718 + MIR SINE MIR 54 250 -12 450 253 22 39 chr4 95122932 95123114 -107205233 + (TA)n Simple_repeat Simple_repeat 2 180 0 225 233 0 17 chr4 95123125 95123185 -107205162 - L1MCa LINE L1 -4362 2064 2006 * 257 270 22 11 chr4 95123137 95123226 -107205121 + L1MC4 LINE L1 6614 6703 -1339 1434 124 5 0 chr4 95123230 95123439 -107204908 - L1PA15 LINE L1 -16 6149 5940 26 30 0 0 chr4 95123491 95123524 -107204823 + AT_rich Low_complexity Low_complexity 1 33 0 315 0 0 0 chr4 95123557 95123592 -107204755 + (TA)n Simple_repeat Simple_repeat 2 36 0 334 224 34 129 chr4 95124670 95124817 -107203530 - MIR SINE MIR -5 257 125 231 256 218 13 chr4 95125174 95125252 -107203095 + MIR SINE MIR 52 145 -63 262 219 0 24 chr4 95125379 95125461 -107202886 + GA-rich Low_complexity Low_complexity 4 83 0 305 24 24 0 chr4 95126307 95126349 -107201998 + (TG)n Simple_repeat Simple_repeat 2 44 0 291 104 0 0 chr4 95126559 95126607 -107201740 + (TA)n Simple_repeat Simple_repeat 2 49 0 242 252 93 19 chr4 95127027 95127134 -107201213 - MIR3 SINE MIR -7 201 87 27 29 0 0 chr4 95127488 95127522 -107200825 + AT_rich Low_complexity Low_complexity 1 34 0 638 261 71 24 chr4 95128180 95128391 -107199956 - MIR SINE MIR -2 260 40 330 333 40 23 chr4 95128647 95128821 -107199526 + MER5A DNA MER1_type 7 183 -6 232 103 190 17 chr4 95130226 95130284 -107198063 - LTR48 LTR ERV1 -40 747 680 1780 141 15 0 chr4 95130357 95130627 -107197720 + AluJo SINE Alu 13 286 -26 1394 194 0 4 chr4 95130705 95130942 -107197405 + AluSx SINE Alu 2 237 -75 1413 212 4 0 chr4 95131235 95131490 -107196857 + MLT1A1 LTR MaLR 1 256 -109 40399 69 5 1 chr4 95131510 95137635 -107190712 - L1PA5 LINE L1 0 6154 11 710 186 0 0 chr4 95137640 95137758 -107190589 + MLT1A1 LTR MaLR 247 364 -1 820 217 12 0 chr4 95137806 95137972 -107190375 + AluJo SINE Alu 121 288 -24 23 54 0 0 chr4 95137975 95138012 -107190335 + AT_rich Low_complexity Low_complexity 1 37 0 859 328 48 26 chr4 95138456 95138807 -107189540 + L2 LINE L2 425 783 -2531 799 274 43 72 chr4 95138825 95139201 -107189146 + L2 LINE L2 2303 2667 -647 306 217 113 67 chr4 95139216 95139341 -107189006 - MLT1E LTR MaLR -418 128 1 9994 178 10 19 chr4 95140796 95145533 -107182814 - L1PA11 LINE L1 -4 7608 2718 574 216 0 9 chr4 95145542 95145658 -107182689 - L1PA11 LINE L1 -7458 123 9 24 32 0 0 chr4 95145689 95145720 -107182627 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 95146521 95146544 -107181803 + AT_rich Low_complexity Low_complexity 1 23 0 706 294 156 0 chr4 95147233 95147502 -107180845 + L1MC4 LINE L1 5497 5807 -2001 201 250 0 0 chr4 95147580 95147640 -107180707 + (TA)n Simple_repeat Simple_repeat 2 61 0 1746 164 14 0 chr4 95148080 95148366 -107179981 + MER7A DNA MER2_type 58 345 -1 366 373 108 11 chr4 95148589 95148857 -107179490 - MLT1K LTR MaLR -287 301 8 242 253 0 12 chr4 95149249 95149332 -107179015 + L1MC4 LINE L1 6615 6696 -1346 3165 218 72 47 chr4 95150294 95150550 -107177797 - L1MC3 LINE L1 -1 7784 7536 3013 135 37 4 chr4 95150550 95151060 -107177287 + MER1A DNA MER1_type 1 527 0 3165 218 72 47 chr4 95151060 95151856 -107176491 - L1MC3 LINE L1 -249 7536 6705 21 0 0 0 chr4 95151864 95151885 -107176462 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr4 95152019 95152052 -107176295 + AT_rich Low_complexity Low_complexity 1 33 0 562 56 0 0 chr4 95152065 95152136 -107176211 - LTR17 LTR ERV1 -454 326 256 24 0 0 0 chr4 95154934 95154958 -107173389 + AT_rich Low_complexity Low_complexity 1 24 0 26 74 0 0 chr4 95155325 95155379 -107172968 + AT_rich Low_complexity Low_complexity 1 54 0 24 53 0 0 chr4 95155792 95155830 -107172517 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr4 95157839 95157865 -107170482 + AT_rich Low_complexity Low_complexity 1 26 0 363 333 35 20 chr4 95158269 95158467 -107169880 + Charlie8 DNA MER1_type 82 282 -2135 685 186 0 0 chr4 95160077 95160195 -107168152 + FLAM_C SINE Alu 1 118 -15 653 256 97 24 chr4 95160531 95160738 -107167609 + MIR SINE MIR 41 262 0 2178 78 0 3 chr4 95161118 95161434 -107166913 + AluY SINE Alu 1 315 0 1068 329 96 8 chr4 95161966 95162738 -107165609 - L2 LINE L2 -19 3294 2454 320 278 119 40 chr4 95163316 95163521 -107164826 - MLT1G LTR MaLR -22 527 327 306 0 0 0 chr4 95163552 95163586 -107164761 + (TC)n Simple_repeat Simple_repeat 1 34 0 480 220 58 42 chr4 95163610 95163815 -107164532 - MLT1G LTR MaLR -275 320 100 287 266 51 0 chr4 95163822 95163901 -107164446 - MER68 LTR ERV1 0 562 480 1011 203 25 104 chr4 95163902 95164228 -107164119 - MER68 LTR ERV1 -220 342 43 11800 182 32 24 chr4 95164241 95165656 -107162691 - L1MA3 LINE L1 -330 7394 5991 1913 91 0 0 chr4 95165656 95165909 -107162438 - AluY SINE Alu -18 293 41 11800 182 32 24 chr4 95165909 95171583 -107156764 - L1MA3 LINE L1 -1733 5991 13 22 35 0 0 chr4 95171755 95171784 -107156563 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 95171929 95171957 -107156390 + AT_rich Low_complexity Low_complexity 1 28 0 1494 163 143 51 chr4 95173317 95173673 -107154674 - MSTA LTR MaLR -39 389 1 1474 241 23 11 chr4 95173723 95174080 -107154267 + MLT1A1 LTR MaLR 1 393 -3 21 71 0 0 chr4 95174302 95174344 -107154003 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr4 95175842 95175864 -107152483 + AT_rich Low_complexity Low_complexity 1 22 0 1710 166 91 16 chr4 95175979 95176286 -107152061 + MER1B DNA MER1_type 1 330 -9 26 0 0 0 chr4 95176330 95176356 -107151991 + AT_rich Low_complexity Low_complexity 1 26 0 1504 209 34 59 chr4 95176385 95176825 -107151522 - MLT1D LTR MaLR -2 503 75 2419 56 0 34 chr4 95177062 95177383 -107150964 - AluY SINE Alu -1 310 1 200 318 24 24 chr4 95177403 95177488 -107150859 + L2 LINE L2 2969 3053 -219 208 349 37 9 chr4 95177547 95177656 -107150691 + L2 LINE L2 3169 3280 -33 398 349 33 7 chr4 95178213 95178365 -107149982 - MIR SINE MIR -106 156 1 297 278 9 26 chr4 95178427 95178542 -107149805 + GA-rich Low_complexity Low_complexity 3 115 0 285 279 27 120 chr4 95178840 95179023 -107149324 - HAL1 LINE L1 -1862 645 480 3136 31 3 13 chr4 95179048 95179438 -107148909 - L1PA3 LINE L1 0 6155 5770 * 7746 21 0 0 chr4 95179436 95181066 -107147281 - L1PA2 LINE L1 0 6155 4526 4490 22 0 0 chr4 95181067 95181713 -107146634 - L1PA3 LINE L1 -376 5779 5134 248 234 319 49 chr4 95181699 95181925 -107146422 - HAL1 LINE L1 -2026 481 195 * 368 339 121 18 chr4 95183468 95183692 -107144655 - MIR SINE MIR -13 249 3 554 262 133 33 chr4 95184078 95184288 -107144059 + L2 LINE L2 2154 2384 -930 1080 168 299 50 chr4 95184379 95184820 -107143527 - MER34B LTR ERV1 -10 555 5 203 277 62 71 chr4 95184871 95184983 -107143364 + L2 LINE L2 2458 2568 -746 935 330 74 38 chr4 95185095 95185778 -107142569 + L2 LINE L2 2591 3298 -15 614 295 46 64 chr4 95186295 95186776 -107141571 - MLT1J LTR MaLR -37 474 3 1919 142 0 7 chr4 95187449 95187744 -107140603 + AluSx SINE Alu 1 293 -19 219 404 26 26 chr4 95188224 95188338 -107140009 + L2 LINE L2 3154 3267 -5 1509 159 92 4 chr4 95188636 95189069 -107139278 - LTR54 LTR ERV1 -5 493 1 2112 100 7 0 chr4 95189434 95189725 -107138622 - AluSp SINE Alu -3 310 18 707 261 15 20 chr4 95190980 95191175 -107137172 + MER63A DNA MER1_type 7 200 -10 31 82 0 0 chr4 95191447 95191520 -107136827 + AT_rich Low_complexity Low_complexity 1 73 0 239 361 82 0 chr4 95192171 95192268 -107136079 + MIR SINE MIR 6 110 -152 401 418 16 33 chr4 95192292 95192536 -107135811 - L2 LINE L2 -53 3219 2980 2604 108 19 3 chr4 95193568 95193937 -107134410 + THE1C LTR MaLR 1 375 0 226 295 36 48 chr4 95194011 95194177 -107134170 + L2 LINE L2 2623 2786 -528 882 188 143 52 chr4 95194234 95194542 -107133805 + MLT1D LTR MaLR 1 336 -169 228 86 0 0 chr4 95197558 95197593 -107130754 + (TG)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr4 95197945 95197969 -107130378 + AT_rich Low_complexity Low_complexity 1 24 0 867 172 57 6 chr4 95197998 95198155 -107130192 + FRAM SINE Alu 1 161 -15 1396 154 92 22 chr4 95199186 95199458 -107128889 - AluJb SINE Alu -21 291 1 1132 261 127 42 chr4 95199483 95199978 -107128369 + MLT1F LTR MaLR 1 537 -5 767 277 40 22 chr4 95200167 95200445 -107127902 + MLT1F-int LTR MaLR 319 601 -770 624 309 60 100 chr4 95200669 95201352 -107126995 + MLT1F-int LTR MaLR 692 1347 -24 677 235 82 70 chr4 95201388 95201841 -107126506 + MLT1F LTR MaLR 22 542 0 228 67 0 0 chr4 95203071 95203101 -107125246 + (A)n Simple_repeat Simple_repeat 1 30 0 2067 118 3 0 chr4 95204464 95204751 -107123596 + AluSp SINE Alu 1 288 -25 205 330 68 34 chr4 95207450 95207568 -107120779 + MIR3 SINE MIR 38 159 -49 265 270 109 23 chr4 95207569 95207743 -107120604 - MER113 DNA MER1_type? 0 521 333 700 229 24 91 chr4 95208116 95208326 -107120021 - MIR SINE MIR -2 260 65 222 233 0 0 chr4 95208467 95208510 -107119837 + L2 LINE L2 3262 3304 -9 2261 96 7 3 chr4 95208580 95208882 -107119465 + AluSx SINE Alu 2 304 -8 336 259 42 63 chr4 95209087 95209230 -107119117 + MIR SINE MIR 78 217 -45 216 274 147 0 chr4 95209397 95209492 -107118855 + MIR SINE MIR 148 256 -6 593 309 110 49 chr4 95211240 95211631 -107116716 + MLT1L LTR MaLR 201 615 0 2118 152 80 12 chr4 95212338 95212739 -107115608 - MSTA LTR MaLR 0 428 1 306 286 83 23 chr4 95213830 95213963 -107114384 - L2 LINE L2 0 3313 3173 1980 84 11 0 chr4 95214178 95214452 -107113895 - AluY SINE Alu -1 310 34 1450 105 0 38 chr4 95214453 95214663 -107113684 - AluSg/x SINE Alu -26 286 85 2171 256 16 76 chr4 95214690 95215463 -107112884 + L1MCb LINE L1 8 733 -5312 1586 125 49 8 chr4 95216157 95216421 -107111926 - Tigger2 DNA MER2_type 0 2718 2444 3326 115 23 16 chr4 95216521 95217122 -107111225 + L1PB3 LINE L1 5185 5789 -365 1392 217 11 7 chr4 95217122 95217394 -107110953 + AluJb SINE Alu 1 273 -39 377 39 0 19 chr4 95217395 95217447 -107110900 + (CA)n Simple_repeat Simple_repeat 1 51 0 1992 111 105 12 chr4 95217449 95217774 -107110573 + L1PB3 LINE L1 5795 6149 -5 24 0 0 0 chr4 95217790 95217814 -107110533 + AT_rich Low_complexity Low_complexity 1 24 0 924 196 18 0 chr4 95217818 95217986 -107110361 + AluJo SINE Alu 120 290 -22 755 159 0 30 chr4 95218216 95218348 -107109999 - FLAM_C SINE Alu -5 128 1 21 0 0 0 chr4 95218495 95218516 -107109831 + AT_rich Low_complexity Low_complexity 1 21 0 188 276 71 55 chr4 95218650 95218777 -107109570 + MIR SINE MIR 120 248 -14 203 286 0 0 chr4 95218851 95218907 -107109440 + A-rich Low_complexity Low_complexity 1 56 0 264 139 0 0 chr4 95218919 95218955 -107109392 - tRNA-Gly-GGG tRNA tRNA -38 36 1 592 309 82 5 chr4 95219869 95220089 -107108258 + MIR SINE MIR 26 262 0 3460 100 3 121 chr4 95220279 95220595 -107107752 - L1PA12 LINE L1 -4712 2869 2517 314 85 0 0 chr4 95220595 95220642 -107107705 + L1PA3 LINE L1 6109 6155 0 1000 108 0 27 chr4 95220645 95220830 -107107517 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3460 100 3 121 chr4 95220830 95221176 -107107171 - L1PA12 LINE L1 -5066 2515 2282 295 394 65 5 chr4 95221715 95221931 -107106416 + MIR SINE MIR 34 262 0 1270 150 136 119 chr4 95222104 95222429 -107105918 + LTR54B LTR ERV1 2 339 -159 1661 109 148 0 chr4 95222429 95222686 -107105661 + AluSc SINE Alu 2 296 -3 1270 150 136 119 chr4 95222686 95222846 -107105501 + LTR54B LTR ERV1 339 495 -3 22 0 0 0 chr4 95223078 95223100 -107105247 + AT_rich Low_complexity Low_complexity 1 22 0 3020 139 6 8 chr4 95224094 95224596 -107103751 - L1MA3 LINE L1 -150 6155 5655 10493 169 30 20 chr4 95224603 95229972 -107098375 - L1MA2 LINE L1 0 7723 2299 269 200 62 0 chr4 95229970 95230035 -107098312 - L1MA2 LINE L1 -7482 83 15 * 2128 109 0 3 chr4 95231369 95231692 -107096655 + AluSc SINE Alu 1 322 0 211 203 16 62 chr4 95233618 95233682 -107094665 - MIR3 SINE MIR -45 163 103 224 318 127 0 chr4 95234406 95234532 -107093815 + MIR SINE MIR 113 254 -8 383 322 98 5 chr4 95234609 95234823 -107093524 - L2 LINE L2 -914 2400 2167 49 66 0 0 chr4 95235377 95235468 -107092879 + AT_rich Low_complexity Low_complexity 1 91 0 209 198 69 20 chr4 95236903 95237004 -107091343 + (TATAA)n Simple_repeat Simple_repeat 3 108 0 2447 77 0 0 chr4 95238237 95238548 -107089799 + AluY SINE Alu 1 311 0 553 276 20 55 chr4 95240006 95240205 -107088142 + MIR SINE MIR 36 227 -35 21 36 0 0 chr4 95240870 95240898 -107087449 + AT_rich Low_complexity Low_complexity 1 28 0 332 276 24 0 chr4 95241039 95241197 -107087150 + (TA)n Simple_repeat Simple_repeat 1 161 0 909 269 40 65 chr4 95241360 95241761 -107086586 + L2 LINE L2 2847 3237 -76 815 267 17 0 chr4 95241794 95241974 -107086373 - MER58A DNA MER1_type -22 202 20 5314 124 21 2 chr4 95242111 95242924 -107085423 - L1PA12 LINE L1 -5276 2305 1478 1469 140 0 0 chr4 95242923 95243152 -107085195 - L1PA12 LINE L1 -7352 229 1 * 23 0 0 0 chr4 95243153 95243176 -107085171 + AT_rich Low_complexity Low_complexity 1 23 0 183 146 0 0 chr4 95243401 95243442 -107084905 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 1677 180 0 42 chr4 95243604 95243915 -107084432 + AluJb SINE Alu 2 299 -13 303 234 11 75 chr4 95244580 95244674 -107083673 + MIR SINE MIR 125 212 -50 624 319 24 0 chr4 95245066 95245273 -107083074 - MIR SINE MIR -50 212 1 241 344 64 55 chr4 95245659 95245877 -107082470 - L2 LINE L2 -349 2965 2746 23 0 0 0 chr4 95246383 95246406 -107081941 + AT_rich Low_complexity Low_complexity 1 23 0 214 246 14 29 chr4 95246483 95246552 -107081795 + (CATATA)n Simple_repeat Simple_repeat 4 71 0 192 313 139 14 chr4 95246851 95246995 -107081352 - L2 LINE L2 -1515 1799 1638 369 276 102 0 chr4 95248753 95248851 -107079496 - MIR SINE MIR -70 192 85 2212 105 0 0 chr4 95249715 95250011 -107078336 + AluSc SINE Alu 1 296 -13 916 177 23 11 chr4 95252097 95252272 -107076075 + L1MB1 LINE L1 5702 5878 -290 272 389 9 0 chr4 95252726 95252839 -107075508 + MIR3 SINE MIR 43 156 -52 375 274 56 56 chr4 95253108 95253323 -107075024 + LTR16A1 LTR ERVL 234 448 -9 31 44 0 0 chr4 95253659 95253704 -107074643 + AT_rich Low_complexity Low_complexity 1 45 0 29 47 0 0 chr4 95253932 95253975 -107074372 + AT_rich Low_complexity Low_complexity 1 43 0 263 265 20 0 chr4 95254923 95255021 -107073326 - L1M4 LINE L1 -3788 2358 2259 321 26 0 0 chr4 95256397 95256435 -107071912 + (TG)n Simple_repeat Simple_repeat 1 38 0 309 340 0 21 chr4 95257201 95257342 -107071005 + CT-rich Low_complexity Low_complexity 2 139 0 445 358 101 27 chr4 95258538 95258952 -107069395 - L2 LINE L2 -592 2722 2278 22 0 0 0 chr4 95259129 95259151 -107069196 + AT_rich Low_complexity Low_complexity 1 22 0 334 361 32 20 chr4 95259272 95259524 -107068823 + L1ME LINE L1 5454 5708 -413 1882 184 3 11 chr4 95259784 95260149 -107068198 - L1PA16 LINE L1 -17 6149 5788 2527 171 69 34 chr4 95261529 95262054 -107066293 - MER21A LTR ERV1 -8 923 381 1269 136 113 23 chr4 95262034 95262291 -107066056 - MER21A LTR ERV1 -651 280 1 * 1486 206 99 43 chr4 95263197 95263639 -107064708 - MLT1C LTR MaLR 0 467 1 375 371 122 28 chr4 95263746 95263882 -107064465 + L2 LINE L2 1549 1671 -1643 213 39 0 0 chr4 95263882 95263908 -107064439 + (CA)n Simple_repeat Simple_repeat 2 27 0 375 371 122 28 chr4 95263908 95264378 -107063969 + L2 LINE L2 1671 2095 -1219 2259 111 27 46 chr4 95264378 95264749 -107063598 + THE1B LTR MaLR 1 364 0 375 371 122 28 chr4 95264749 95265086 -107063261 + L2 LINE L2 2095 2674 -640 1428 66 3 185 chr4 95265524 95265827 -107062520 - THE1C-int LTR MaLR -1332 248 1 1899 164 56 11 chr4 95265827 95266186 -107062161 - THE1C LTR MaLR 0 375 1 2259 169 22 47 chr4 95266186 95266449 -107061898 + Tigger1 DNA MER2_type 1979 2228 -190 1980 64 113 0 chr4 95266449 95266714 -107061633 + AluY SINE Alu 1 295 -16 2259 169 22 47 chr4 95266714 95266899 -107061448 + Tigger1 DNA MER2_type 2228 2416 -2 1966 188 19 32 chr4 95267453 95267916 -107060431 - MER74C LTR ERVL 0 460 4 5735 92 19 22 chr4 95268056 95269162 -107059185 - L1PA13 LINE L1 -2 6161 5036 10270 177 12 19 chr4 95269510 95270342 -107058005 - L1P LINE L1 -1010 5787 4951 2180 103 13 3 chr4 95270342 95270652 -107057695 + AluSq SINE Alu 1 313 0 10270 177 12 19 chr4 95270652 95271918 -107056429 - L1P LINE L1 -1846 4951 3702 229 245 0 0 chr4 95272019 95272068 -107056279 + (CGGGG)n Simple_repeat Simple_repeat 1 49 0 10520 209 65 17 chr4 95272077 95274483 -107053864 - L1PA13 LINE L1 -4236 2561 27 659 179 9 0 chr4 95274640 95274752 -107053595 - AluJb SINE Alu -185 127 15 25 0 0 0 chr4 95275228 95275253 -107053094 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr4 95276034 95276071 -107052276 + AT_rich Low_complexity Low_complexity 1 37 0 2050 123 3 0 chr4 95276303 95276595 -107051752 + AluSg SINE Alu 1 293 -17 295 98 33 0 chr4 95276605 95276666 -107051681 + (TA)n Simple_repeat Simple_repeat 1 63 0 22 0 0 0 chr4 95276950 95276972 -107051375 + AT_rich Low_complexity Low_complexity 1 22 0 3834 88 4 0 chr4 95277579 95278101 -107050246 - L1PA7 LINE L1 -1 6153 5630 6714 75 0 1 chr4 95277581 95278995 -107049352 - L1PA7 LINE L1 -3 6151 4737 21 95 0 0 chr4 95279330 95279393 -107048954 + AT_rich Low_complexity Low_complexity 1 63 0 870 265 91 83 chr4 95279479 95280008 -107048339 - MLT1H1 LTR MaLR -22 533 1 22 0 0 0 chr4 95280105 95280127 -107048220 + AT_rich Low_complexity Low_complexity 1 22 0 474 128 26 0 chr4 95280402 95280480 -107047867 - MADE1 DNA Mariner 0 80 1 238 204 20 0 chr4 95281223 95281272 -107047075 + CT-rich Low_complexity Low_complexity 4 53 0 218 327 12 16 chr4 95281468 95281555 -107046792 - MIR SINE MIR -88 120 38 278 291 53 0 chr4 95281824 95281906 -107046441 + FRAM/FAM SINE Alu 1 73 -93 2149 228 31 23 chr4 95281977 95282582 -107045765 + L1 LINE L1 4356 4965 -1181 642 242 79 75 chr4 95282946 95283490 -107044857 - LTR48B LTR ERV1 0 644 1 233 283 264 0 chr4 95283927 95284033 -107044314 + L2 LINE L2 3139 3272 0 1343 254 112 64 chr4 95284713 95285398 -107042949 - MER50 LTR ERV1 0 734 17 235 272 216 0 chr4 95285441 95285566 -107042781 - MIR SINE MIR -27 235 84 25 31 0 0 chr4 95287413 95287445 -107040902 + AT_rich Low_complexity Low_complexity 1 32 0 1576 209 13 45 chr4 95288260 95288637 -107039710 - MLT1A1 LTR MaLR 0 365 1 1361 185 99 48 chr4 95288951 95289324 -107039023 + MSTD LTR MaLR 3 394 -2 26 0 0 0 chr4 95290188 95290214 -107038133 + AT_rich Low_complexity Low_complexity 1 26 0 2170 69 4 0 chr4 95290279 95290592 -107037755 + AluY SINE Alu 6 319 0 278 280 13 13 chr4 95291751 95291826 -107036521 + MER69 DNA AcHobo 1 75 -1151 799 184 101 50 chr4 95292139 95292476 -107035871 + MER69 DNA AcHobo 2074 2427 -99 1876 240 46 45 chr4 95292872 95293492 -107034855 - MER97b DNA MER1_type? -197 856 233 246 62 0 0 chr4 95293492 95293524 -107034823 + (TG)n Simple_repeat Simple_repeat 1 32 0 1876 240 46 45 chr4 95293524 95293635 -107034712 - MER97b DNA MER1_type? -820 233 124 2216 99 0 3 chr4 95293988 95294291 -107034056 - AluSg SINE Alu -8 302 1 28 29 0 0 chr4 95294639 95294674 -107033673 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr4 95295044 95295079 -107033268 + AT_rich Low_complexity Low_complexity 1 35 0 33 43 0 0 chr4 95295982 95296029 -107032318 + AT_rich Low_complexity Low_complexity 1 47 0 840 218 127 82 chr4 95296086 95296463 -107031884 + MSTD LTR MaLR 3 396 0 227 294 39 49 chr4 95296473 95296575 -107031772 - MIR SINE MIR -64 144 44 929 219 40 114 chr4 95297367 95297788 -107030559 + MLT1B LTR MaLR 1 390 0 655 126 274 0 chr4 95297941 95298076 -107030271 + MER20 DNA MER1_type 1 172 -47 2087 132 6 6 chr4 95298161 95298472 -107029875 + AluSx SINE Alu 1 311 -1 22 35 0 0 chr4 95298550 95298579 -107029768 + AT_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr4 95299062 95299098 -107029249 + AT_rich Low_complexity Low_complexity 1 36 0 243 61 0 0 chr4 95301190 95301223 -107027124 + (CA)n Simple_repeat Simple_repeat 2 34 0 1744 138 72 36 chr4 95301378 95301740 -107026607 + THE1C LTR MaLR 1 375 0 9281 130 11 64 chr4 95301742 95302940 -107025407 + THE1C-int LTR MaLR 3 1091 -489 2617 91 6 0 chr4 95302940 95303293 -107025054 - THE1A LTR MaLR 0 355 1 9281 130 11 64 chr4 95303293 95303759 -107024588 + THE1C-int LTR MaLR 1091 1580 0 1765 162 52 25 chr4 95303759 95304124 -107024223 + THE1C LTR MaLR 1 375 0 3096 86 9 3 chr4 95304347 95304766 -107023581 + MLT2A1 LTR ERVL 1 480 -40 198 103 0 0 chr4 95304793 95304822 -107023525 + (TG)n Simple_repeat Simple_repeat 1 29 0 376 109 0 0 chr4 95304822 95304877 -107023470 + MLT2A1 LTR ERVL 390 444 0 2210 79 3 23 chr4 95305600 95305903 -107022444 + AluY SINE Alu 2 298 -13 520 200 55 0 chr4 95306003 95306168 -107022179 + L1MA3 LINE L1 6132 6305 0 1937 186 6 0 chr4 95306511 95306845 -107021502 + MER1B DNA MER1_type 2 337 0 1875 146 140 8 chr4 95307388 95307766 -107020581 + MSTA LTR MaLR 1 428 0 1673 208 67 3 chr4 95308896 95309267 -107019080 - MSTD LTR MaLR -1 395 1 630 0 0 0 chr4 95309541 95309611 -107018736 + (TAAAA)n Simple_repeat Simple_repeat 1 70 0 268 148 23 34 chr4 95309795 95309883 -107018464 + CT-rich Low_complexity Low_complexity 4 90 0 2417 44 0 0 chr4 95310307 95310620 -107017727 + L1PA3 LINE L1 5841 6153 0 180 77 0 0 chr4 95310636 95310662 -107017685 + (A)n Simple_repeat Simple_repeat 1 26 0 198 0 0 0 chr4 95311633 95311655 -107016692 + (TA)n Simple_repeat Simple_repeat 2 23 0 211 256 122 12 chr4 95311727 95311809 -107016538 + MIR SINE MIR 102 192 -70 4111 174 32 34 chr4 95312520 95313545 -107014802 - L1MB7 LINE L1 -8 6176 5150 203 348 85 0 chr4 95315343 95315461 -107012886 - MIR SINE MIR -102 160 33 1004 254 3 21 chr4 95315539 95315823 -107012524 - L1MA9 LINE L1 -38 6274 5996 1474 234 103 60 chr4 95315994 95316478 -107011869 + MLT1F1 LTR MaLR 63 567 0 347 269 62 23 chr4 95316758 95316888 -107011459 - MIR SINE MIR -56 206 72 24 32 0 0 chr4 95318105 95318136 -107010211 + AT_rich Low_complexity Low_complexity 1 31 0 1674 137 139 61 chr4 95318367 95318762 -107009585 + MSTA LTR MaLR 3 428 0 182 119 48 0 chr4 95320442 95320484 -107007863 + T-rich Low_complexity Low_complexity 3 46 0 1733 258 69 75 chr4 95320805 95321541 -107006806 + LTR41 LTR ERVL 1 732 -41 1646 161 82 20 chr4 95322334 95322687 -107005660 - THE1C LTR MaLR 0 375 1 8794 129 62 15 chr4 95322687 95323745 -107004602 - THE1C-int LTR MaLR 0 1580 428 2402 97 0 0 chr4 95323745 95324054 -107004293 - AluY SINE Alu -2 309 1 8794 129 62 15 chr4 95324054 95324504 -107003843 - THE1C-int LTR MaLR -1152 428 1 1597 125 64 105 chr4 95324504 95324895 -107003452 - THE1C LTR MaLR 0 375 1 224 241 18 36 chr4 95325659 95325771 -107002576 + A-rich Low_complexity Low_complexity 5 114 0 1495 88 10 0 chr4 95326615 95326807 -107001540 + AluSc SINE Alu 1 194 -115 1774 148 22 3 chr4 95326807 95327125 -107001222 + L1MA4 LINE L1 5971 6294 -6 1924 135 0 7 chr4 95328184 95328488 -106999859 - AluSc SINE Alu -7 302 1 33 0 0 94 chr4 95328672 95328736 -106999611 + AT_rich Low_complexity Low_complexity 1 58 0 25 73 0 0 chr4 95328744 95328785 -106999562 + AT_rich Low_complexity Low_complexity 1 41 0 24 75 0 0 chr4 95328845 95328885 -106999462 + AT_rich Low_complexity Low_complexity 1 40 0 3015 186 34 19 chr4 95328911 95329368 -106998979 + L1P5 LINE L1 4556 5005 -1151 2047 113 22 38 chr4 95329368 95329686 -106998661 + AluSq SINE Alu 1 313 0 3015 186 34 19 chr4 95329686 95330462 -106997885 + L1P5 LINE L1 5005 5800 -356 10025 252 63 25 chr4 95330566 95330902 -106997445 - L1PBb LINE L1 -814 5389 5067 2047 113 22 38 chr4 95330902 95331220 -106997127 - AluSq SINE Alu 0 313 1 10025 252 63 25 chr4 95331220 95334763 -106993584 - L1PBb LINE L1 -1136 5067 1173 203 88 29 0 chr4 95334763 95334797 -106993550 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 10025 252 63 25 chr4 95334797 95335602 -106992745 - L1PBb LINE L1 -5030 1173 400 410 261 80 34 chr4 95335689 95335774 -106992573 + L1 LINE L1 2695 2775 -3371 2577 102 3 0 chr4 95335774 95336128 -106992219 + THE1A LTR MaLR 1 355 0 410 261 80 34 chr4 95336128 95336218 -106992129 + L1 LINE L1 2775 2878 -3268 1184 139 6 0 chr4 95336311 95336484 -106991863 + AluSg/x SINE Alu 124 297 -15 34 79 0 0 chr4 95336552 95336628 -106991719 + AT_rich Low_complexity Low_complexity 1 76 0 385 351 116 21 chr4 95337563 95337950 -106990397 + L2 LINE L2 2377 2800 -514 239 0 32 0 chr4 95337986 95338017 -106990330 + (CA)n Simple_repeat Simple_repeat 1 32 0 25 83 0 0 chr4 95338512 95338572 -106989775 + AT_rich Low_complexity Low_complexity 1 60 0 291 294 47 47 chr4 95340625 95340795 -106987552 - L2 LINE L2 -1 3312 3143 247 393 14 47 chr4 95340897 95341108 -106987239 - L2 LINE L2 -343 2971 2768 629 234 38 29 chr4 95341183 95341392 -106986955 - MER33 DNA MER1_type -105 219 9 246 351 45 30 chr4 95341392 95341526 -106986821 - L2 LINE L2 -556 2758 2623 1701 203 44 50 chr4 95341526 95341985 -106986362 - MLT1C LTR MaLR 0 467 12 1599 168 132 43 chr4 95342544 95342937 -106985410 - MSTA LTR MaLR 0 428 1 917 274 12 12 chr4 95343500 95343745 -106984602 - MER115 DNA AcHobo 0 693 449 41229 61 2 6 chr4 95344126 95350295 -106978052 + L1PA4 LINE L1 1 6142 -13 26 50 0 0 chr4 95351271 95351311 -106977036 + AT_rich Low_complexity Low_complexity 1 40 0 237 33 0 0 chr4 95351393 95351423 -106976924 + (CA)n Simple_repeat Simple_repeat 2 31 0 216 0 0 0 chr4 95351722 95351746 -106976601 + (A)n Simple_repeat Simple_repeat 1 24 0 246 354 81 10 chr4 95351968 95352166 -106976181 + MIR SINE MIR 51 262 0 24 0 0 0 chr4 95352231 95352255 -106976092 + AT_rich Low_complexity Low_complexity 1 24 0 234 406 14 38 chr4 95353018 95353230 -106975117 + L2 LINE L2 2823 3029 -243 24 32 0 0 chr4 95353618 95353649 -106974698 + AT_rich Low_complexity Low_complexity 1 31 0 189 262 0 0 chr4 95354917 95354978 -106973369 + G-rich Low_complexity Low_complexity 2 62 0 26 30 0 0 chr4 95356376 95356409 -106971938 + AT_rich Low_complexity Low_complexity 1 33 0 22 70 0 0 chr4 95357103 95357146 -106971201 + AT_rich Low_complexity Low_complexity 1 43 0 1939 143 0 0 chr4 95357360 95357660 -106970687 - AluSx SINE Alu -12 300 1 22 35 0 0 chr4 95357660 95357689 -106970658 + AT_rich Low_complexity Low_complexity 1 29 0 228 387 0 0 chr4 95357819 95357925 -106970422 - MIR3 SINE MIR -5 203 98 32 43 0 0 chr4 95358708 95358754 -106969593 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr4 95359138 95359167 -106969180 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr4 95360038 95360064 -106968283 + AT_rich Low_complexity Low_complexity 1 26 0 583 261 62 96 chr4 95361023 95361345 -106967002 - L2 LINE L2 -5 3308 2998 26 50 0 0 chr4 95361887 95361927 -106966420 + AT_rich Low_complexity Low_complexity 1 40 0 1317 156 69 28 chr4 95362361 95362650 -106965697 + L1MA7 LINE L1 5989 6289 -2 2198 84 0 37 chr4 95362953 95363276 -106965071 + AluY SINE Alu 1 311 0 463 162 0 34 chr4 95363544 95363692 -106964655 + (TA)n Simple_repeat Simple_repeat 1 143 0 228 135 0 0 chr4 95363792 95363829 -106964518 + (CA)n Simple_repeat Simple_repeat 2 38 0 2104 122 3 0 chr4 95365180 95365483 -106962864 + AluSx SINE Alu 1 304 -8 1336 34 23 0 chr4 95365500 95365543 -106962804 + (GAAA)n Simple_repeat Simple_repeat 1 223 0 1336 34 23 0 chr4 95365543 95365719 -106962628 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 459 0 0 0 chr4 95365766 95365817 -106962530 + (TG)n Simple_repeat Simple_repeat 1 51 0 2229 61 14 3 chr4 95365818 95366115 -106962232 - AluY SINE Alu -9 302 3 493 282 57 10 chr4 95366579 95366788 -106961559 + L1MC5 LINE L1 5550 5768 -2040 22 35 0 0 chr4 95366866 95366895 -106961452 + AT_rich Low_complexity Low_complexity 1 29 0 235 267 60 43 chr4 95367113 95367229 -106961118 + L1MC5 LINE L1 7324 7441 -520 2073 108 4 0 chr4 95367281 95367559 -106960788 + AluSp SINE Alu 2 280 -33 252 59 0 0 chr4 95367559 95367593 -106960754 + (CA)n Simple_repeat Simple_repeat 1 34 0 257 128 21 0 chr4 95367650 95367697 -106960650 + (TA)n Simple_repeat Simple_repeat 2 49 0 1576 178 120 40 chr4 95367766 95368166 -106960181 + MSTB1 LTR MaLR 1 432 0 227 229 83 0 chr4 95368533 95368642 -106959705 + L1ME4a LINE L1 6000 6117 -4 21 36 0 0 chr4 95368819 95368847 -106959500 + AT_rich Low_complexity Low_complexity 1 28 0 341 324 18 96 chr4 95369607 95369888 -106958459 - L2 LINE L2 -50 3263 3005 291 28 0 0 chr4 95370111 95370147 -106958200 + (CA)n Simple_repeat Simple_repeat 2 37 0 209 170 57 0 chr4 95371251 95371304 -106957043 + (CATTT)n Simple_repeat Simple_repeat 2 57 0 28 29 0 0 chr4 95372313 95372348 -106955999 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr4 95372401 95372434 -106955913 + AT_rich Low_complexity Low_complexity 1 33 0 361 178 11 11 chr4 95372895 95372985 -106955362 + CT-rich Low_complexity Low_complexity 3 92 0 264 352 0 0 chr4 95373393 95373464 -106954883 - MIR SINE MIR -113 149 79 26 50 0 0 chr4 95374108 95374148 -106954199 + AT_rich Low_complexity Low_complexity 1 40 0 1724 160 6 19 chr4 95374571 95374883 -106953464 - AluJb SINE Alu -4 308 1 327 148 46 19 chr4 95375488 95375596 -106952751 + (TA)n Simple_repeat Simple_repeat 2 112 0 1663 152 0 47 chr4 95376211 95376507 -106951840 - AluJo SINE Alu -30 282 1 1970 101 14 3 chr4 95376584 95376880 -106951467 + AluSx SINE Alu 1 299 -13 31 68 0 0 chr4 95377866 95377925 -106950422 + AT_rich Low_complexity Low_complexity 1 59 0 640 284 42 6 chr4 95378441 95378631 -106949716 - MIR SINE MIR 0 262 69 456 304 25 104 chr4 95378846 95378980 -106949367 - MIR SINE MIR 0 262 160 1825 151 24 0 chr4 95378980 95379272 -106949075 + AluSq SINE Alu 1 299 -14 456 304 25 104 chr4 95379272 95379417 -106948930 - MIR SINE MIR -102 160 5 1015 298 24 34 chr4 95379456 95379865 -106948482 - MLT1I LTR MaLR -2 407 3 27 29 0 0 chr4 95380916 95380950 -106947397 + AT_rich Low_complexity Low_complexity 1 34 0 373 308 17 8 chr4 95382262 95382379 -106945968 - L2 LINE L2 0 3313 3196 200 296 99 0 chr4 95382372 95382443 -106945904 - MIR SINE MIR -56 206 129 * 356 322 8 0 chr4 95382453 95382571 -106945776 - MIR SINE MIR -60 202 84 258 192 0 0 chr4 95383127 95383179 -106945168 + (CA)n Simple_repeat Simple_repeat 2 53 0 768 262 43 0 chr4 95384914 95385124 -106943223 + MER20 DNA MER1_type 1 219 0 202 182 23 23 chr4 95386054 95386098 -106942249 - L2 LINE L2 -5 3308 3265 21 57 0 0 chr4 95386121 95386156 -106942191 + AT_rich Low_complexity Low_complexity 1 35 0 250 291 8 8 chr4 95386211 95386328 -106942019 + (TA)n Simple_repeat Simple_repeat 2 118 0 606 311 179 25 chr4 95387473 95387881 -106940466 + L2 LINE L2 2841 3311 -2 486 319 134 69 chr4 95388210 95388748 -106939599 + L2 LINE L2 2729 3298 -15 24 53 0 0 chr4 95388823 95388861 -106939486 + AT_rich Low_complexity Low_complexity 1 38 0 249 336 60 15 chr4 95388915 95389049 -106939298 + MIR SINE MIR 72 211 -51 1627 162 7 36 chr4 95389395 95389697 -106938650 - AluJo SINE Alu -7 305 13 2353 91 0 0 chr4 95389722 95390031 -106938316 - AluSg1 SINE Alu 0 309 1 514 76 58 29 chr4 95390108 95390279 -106938068 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 219 274 0 24 chr4 95390284 95390368 -106937979 + (TA)n Simple_repeat Simple_repeat 1 82 0 991 167 171 48 chr4 95391257 95391509 -106936838 + MLT1A1 LTR MaLR 83 365 0 724 210 39 0 chr4 95391546 95391727 -106936620 - LTR37B LTR ERV1 0 468 281 234 295 181 18 chr4 95391963 95392129 -106936218 - MIR SINE MIR -13 249 57 357 260 123 20 chr4 95392139 95392285 -106936062 - MIR SINE MIR -14 248 88 365 229 165 15 chr4 95393454 95393625 -106934722 - MIR SINE MIR -10 252 9 27 87 0 0 chr4 95394268 95394337 -106934010 + AT_rich Low_complexity Low_complexity 1 69 0 198 0 0 0 chr4 95394602 95394624 -106933723 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 323 257 115 69 chr4 95394645 95394853 -106933494 - MIR SINE MIR -49 213 5 1690 154 46 68 chr4 95396051 95396446 -106931901 + MLT1B LTR MaLR 1 386 -4 284 312 58 7 chr4 95396732 95396870 -106931477 + L1ME LINE L1 5596 5740 -381 4551 243 80 38 chr4 95397019 95397076 -106931271 + L1M4 LINE L1 14 67 -6579 2210 84 7 23 chr4 95397076 95397384 -106930963 + AluY SINE Alu 1 303 -8 4551 243 80 38 chr4 95397384 95399326 -106929021 + L1M4 LINE L1 67 2098 -4548 2559 236 16 16 chr4 95399408 95399797 -106928550 + L1M4 LINE L1 5016 5407 -1237 1986 138 0 3 chr4 95399797 95400094 -106928253 + AluSx SINE Alu 1 296 -16 2559 236 16 16 chr4 95400094 95400386 -106927961 + L1M4 LINE L1 5406 5697 -947 * 4405 250 71 41 chr4 95400360 95400842 -106927505 + L1MB7 LINE L1 1 467 -5744 180 0 0 0 chr4 95400842 95400862 -106927485 + (TAA)n Simple_repeat Simple_repeat 2 21 0 4405 250 71 41 chr4 95400862 95402396 -106925951 + L1MB7 LINE L1 467 2050 -4161 2810 255 56 24 chr4 95402563 95403750 -106924597 + L1MB7 LINE L1 2029 3257 -2953 2039 144 126 11 chr4 95403758 95404132 -106924215 - MSTA LTR MaLR -11 417 1 7763 196 38 40 chr4 95404132 95406980 -106921367 + L1ME2 LINE L1 3542 6341 -10 372 163 22 11 chr4 95406984 95407076 -106921271 + L1MA9 LINE L1 6220 6312 0 408 253 0 0 chr4 95407094 95407193 -106921154 + L1MB7 LINE L1 5240 5338 -872 3164 225 34 20 chr4 95407200 95408097 -106920250 + L1MB7 LINE L1 5410 6356 -20 350 61 0 0 chr4 95408114 95408163 -106920184 + L1MB7 LINE L1 6128 6176 -8 23 0 0 0 chr4 95408481 95408504 -106919843 + AT_rich Low_complexity Low_complexity 1 23 0 368 380 9 0 chr4 95409103 95409324 -106919023 + L1ME LINE L1 5570 5792 -329 488 303 32 63 chr4 95409709 95409993 -106918354 + MLT1J LTR MaLR 227 501 -10 241 236 0 0 chr4 95409994 95410049 -106918298 - L1MC4 LINE L1 -1336 6706 6652 502 354 85 0 chr4 95410774 95410997 -106917350 + MIR SINE MIR 6 247 -15 233 250 15 0 chr4 95411758 95411826 -106916521 + (TA)n Simple_repeat Simple_repeat 2 70 0 204 97 0 0 chr4 95411892 95411923 -106916424 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 183 264 132 0 chr4 95411975 95412028 -106916319 - L2 LINE L2 -57 3256 3197 25 31 0 0 chr4 95412028 95412060 -106916287 + AT_rich Low_complexity Low_complexity 1 32 0 304 204 143 61 chr4 95412218 95412316 -106916031 + MLT1I LTR MaLR 52 157 -252 273 328 15 23 chr4 95412395 95412526 -106915821 + MLT1I LTR MaLR 280 409 0 801 252 63 118 chr4 95412526 95413217 -106915130 - L2 LINE L2 -46 3267 2613 1059 268 71 19 chr4 95413649 95413974 -106914373 + LTR16C LTR ERVL 150 491 0 261 340 64 0 chr4 95414177 95414271 -106914076 + L2 LINE L2 3158 3257 -15 1550 217 41 27 chr4 95414702 95415071 -106913276 - MLT1A2 LTR MaLR 0 374 1 188 333 16 0 chr4 95416046 95416109 -106912238 + L3 LINE CR1 1511 1574 -3 213 303 66 0 chr4 95416846 95416922 -106911425 - MIR SINE MIR -15 247 167 27 29 0 0 chr4 95417763 95417797 -106910550 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr4 95418015 95418037 -106910310 + AT_rich Low_complexity Low_complexity 1 22 0 271 314 59 10 chr4 95418045 95418147 -106910200 - MIR SINE MIR -122 140 34 226 309 11 11 chr4 95419461 95419555 -106908792 - MER110 LTR ERV1 -12 479 386 1733 174 3 58 chr4 95420670 95420997 -106907350 + AluJb SINE Alu 3 311 -1 251 293 121 17 chr4 95422310 95422426 -106905921 - MER5B DNA MER1_type -49 129 2 225 154 0 0 chr4 95422473 95422512 -106905835 + GA-rich Low_complexity Low_complexity 4 42 0 371 240 67 101 chr4 95422971 95423150 -106905197 - L3 LINE CR1 -466 1111 939 357 324 49 17 chr4 95423215 95423373 -106904974 + MER5A DNA MER1_type 15 184 -5 266 289 133 15 chr4 95423577 95423712 -106904635 - MER5A DNA MER1_type 0 189 39 251 388 98 22 chr4 95423740 95423894 -106904453 + L2 LINE L2 1560 1701 -1613 1327 202 21 108 chr4 95423894 95424405 -106903942 - MLT1C LTR MaLR 0 467 1 251 388 98 22 chr4 95424405 95424616 -106903731 + L2 LINE L2 1701 1953 -1361 25 0 0 0 chr4 95424976 95425001 -106903346 + AT_rich Low_complexity Low_complexity 1 25 0 1706 250 47 77 chr4 95425053 95425652 -106902695 - MLT1E LTR MaLR -12 581 1 314 338 81 39 chr4 95425660 95425968 -106902379 + L2 LINE L2 2155 2475 -839 * 392 310 17 0 chr4 95425927 95426043 -106902304 - MER5B DNA MER1_type -60 118 1 1204 252 85 6 chr4 95426161 95426490 -106901857 - MLT1A1 LTR MaLR 0 365 11 2033 135 0 101 chr4 95426592 95426687 -106901660 - MER47A DNA MER2_type -1957 366 263 833 197 22 39 chr4 95426687 95426865 -106901482 + FAM SINE Alu 1 175 0 2033 135 0 101 chr4 95426865 95427176 -106901171 - MER47A DNA MER2_type -2060 263 1 377 315 111 17 chr4 95427177 95427358 -106900989 - MIR SINE MIR -61 201 4 357 347 7 14 chr4 95427714 95427861 -106900486 - MIR SINE MIR -78 184 39 1585 232 46 3 chr4 95429173 95429561 -106898786 - L1MD2 LINE L1 -341 6018 5614 2032 186 46 76 chr4 95429561 95430061 -106898286 - MLT1D LTR MaLR 0 505 21 208 0 0 0 chr4 95430583 95430606 -106897741 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2138 104 3 0 chr4 95430606 95430896 -106897451 - AluSp SINE Alu -1 317 5 5625 138 3 0 chr4 95431244 95432299 -106896048 - L1PA16 LINE L1 0 6166 5106 6622 195 16 38 chr4 95432311 95432716 -106895631 - L1 LINE L1 -1007 5139 4726 729 10 10 20 chr4 95432716 95432816 -106895531 + (TATAG)n Simple_repeat Simple_repeat 1 99 0 6622 195 16 38 chr4 95432816 95433997 -106894350 - L1 LINE L1 -1420 4726 3589 8309 153 30 6 chr4 95434070 95435739 -106892608 - L1PBa LINE L1 -3788 3074 1311 4286 200 63 7 chr4 95435786 95436773 -106891574 - L1PBa LINE L1 -5816 1047 6 267 54 0 0 chr4 95437917 95437954 -106890393 + (CA)n Simple_repeat Simple_repeat 2 38 0 626 151 27 34 chr4 95438063 95438209 -106890138 - L1MB1 LINE L1 -6 6162 6018 10183 220 39 50 chr4 95438265 95439007 -106889340 - L1 LINE L1 -1153 6014 5265 2321 69 0 7 chr4 95439007 95439298 -106889049 - AluY SINE Alu -3 308 20 10183 220 39 50 chr4 95439298 95441262 -106887085 - L1 LINE L1 -1902 5265 3280 5979 71 0 16 chr4 95441262 95442055 -106886292 - LTR17 LTR ERV1 0 780 1 10183 220 39 50 chr4 95442055 95445699 -106882648 - L1 LINE L1 -3887 3280 1 1427 249 2 45 chr4 95445699 95446126 -106882221 - L1 LINE L1 -1099 5047 4638 2160 84 0 59 chr4 95446126 95446446 -106881901 - AluY SINE Alu -9 302 2 1427 249 2 45 chr4 95446446 95446464 -106881883 - L1 LINE L1 -1508 4638 4621 180 0 0 0 chr4 95446466 95446486 -106881861 + (TTG)n Simple_repeat Simple_repeat 2 21 0 33 66 0 0 chr4 95448116 95448177 -106880170 + AT_rich Low_complexity Low_complexity 1 61 0 22 35 0 0 chr4 95448748 95448777 -106879570 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr4 95448789 95448824 -106879523 + AT_rich Low_complexity Low_complexity 1 35 0 843 112 0 8 chr4 95449930 95450064 -106878283 - L1PA13 LINE L1 -1 6162 6030 279 0 0 0 chr4 95450338 95450369 -106877978 + (TG)n Simple_repeat Simple_repeat 2 32 0 533 174 110 9 chr4 95450374 95450483 -106877864 - FRAM SINE Alu -23 153 34 247 364 67 72 chr4 95450911 95451598 -106876749 + L2 LINE L2 2596 3269 -3 29 0 0 0 chr4 95451751 95451780 -106876567 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr4 95451965 95451991 -106876356 + AT_rich Low_complexity Low_complexity 1 26 0 2475 55 0 0 chr4 95452907 95453200 -106875147 + AluY SINE Alu 1 293 -18 241 226 0 0 chr4 95454164 95454217 -106874130 - L2 LINE L2 0 3313 3261 7488 30 0 0 chr4 95454531 95455588 -106872759 - L1PA4 LINE L1 -4 6151 5103 6136 32 0 1 chr4 95455588 95456333 -106872014 + L1P LINE L1 4396 5139 -1007 614 211 82 43 chr4 95456381 95456411 -106871936 + MER5C DNA MER1_type 52 79 -245 1674 141 198 25 chr4 95456411 95456774 -106871573 - MSTC LTR MaLR -2 426 1 614 211 82 43 chr4 95456774 95456951 -106871396 + MER5C DNA MER1_type 79 267 -57 36 40 0 0 chr4 95459482 95459532 -106868815 + AT_rich Low_complexity Low_complexity 1 50 0 654 168 96 30 chr4 95459643 95459810 -106868537 - MER53 DNA DNA 0 189 12 645 272 11 28 chr4 95462163 95462343 -106866004 + MIR SINE MIR 46 222 -40 22 35 0 0 chr4 95462531 95462560 -106865787 + AT_rich Low_complexity Low_complexity 1 29 0 680 249 44 6 chr4 95462807 95462988 -106865359 + MER3 DNA MER1_type 1 188 -21 25 0 0 0 chr4 95463525 95463550 -106864797 + AT_rich Low_complexity Low_complexity 1 25 0 946 225 6 0 chr4 95465437 95465619 -106862728 - MER5A DNA MER1_type -6 183 1 367 274 29 0 chr4 95465839 95465941 -106862406 - LTR33 LTR ERVL 0 521 417 439 310 71 31 chr4 95465975 95466230 -106862117 - LTR33 LTR ERVL -197 324 60 23 33 0 0 chr4 95467213 95467243 -106861104 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr4 95468299 95468328 -106860019 + AT_rich Low_complexity Low_complexity 1 29 0 294 57 0 0 chr4 95468435 95468470 -106859877 - U2 snRNA snRNA -153 35 1 299 288 56 62 chr4 95468729 95468889 -106859458 + MER20B DNA MER1_type 13 171 -612 376 309 15 60 chr4 95469056 95469257 -106859090 + L2 LINE L2 2260 2451 -863 1839 154 7 0 chr4 95469502 95469795 -106858552 + AluSx SINE Alu 1 295 -17 408 40 0 0 chr4 95469938 95469988 -106858359 + (CA)n Simple_repeat Simple_repeat 1 50 0 36 87 0 0 chr4 95470418 95470510 -106857837 + AT_rich Low_complexity Low_complexity 1 92 0 1698 136 16 66 chr4 95471731 95472048 -106856299 - AluJo SINE Alu -11 301 1 302 316 25 13 chr4 95472157 95472315 -106856032 - L1MC4a LINE L1 -1936 5872 5713 184 211 28 0 chr4 95472345 95472416 -106855931 + (TA)n Simple_repeat Simple_repeat 2 74 0 218 258 45 0 chr4 95472452 95472518 -106855829 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 1884 151 26 32 chr4 95474788 95475165 -106853182 + THE1C LTR MaLR 1 375 0 421 293 101 61 chr4 95475671 95476115 -106852232 + HAL1 LINE L1 759 1220 -1287 515 263 71 44 chr4 95476230 95476286 -106852061 + L1MCa LINE L1 1488 1541 -1246 2108 117 10 3 chr4 95476286 95476593 -106851754 - AluSx SINE Alu -3 309 1 515 263 71 44 chr4 95476593 95476811 -106851536 + L1MCa LINE L1 1541 2022 -765 23 68 0 0 chr4 95477949 95477993 -106850354 + AT_rich Low_complexity Low_complexity 1 44 0 2120 80 77 6 chr4 95478495 95478857 -106849490 - LTR7 LTR ERV1 -2 448 1 239 0 32 0 chr4 95479395 95479426 -106848921 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1830 126 7 4 chr4 95479434 95479704 -106848643 - AluSc SINE Alu -22 287 17 275 227 0 136 chr4 95479704 95479828 -106848519 - MLT1J2 LTR MaLR -273 177 70 189 171 0 0 chr4 95479934 95479969 -106848378 + (CATATA)n Simple_repeat Simple_repeat 1 35 0 204 211 14 28 chr4 95480929 95481000 -106847347 + (TA)n Simple_repeat Simple_repeat 1 70 0 214 331 25 68 chr4 95482591 95482754 -106845593 + MIR SINE MIR 21 176 -86 2073 135 0 0 chr4 95482854 95483150 -106845197 + AluSx SINE Alu 1 296 -16 484 339 117 26 chr4 95483936 95484355 -106843992 + L1MC/D LINE L1 5325 5781 -2027 27 87 0 0 chr4 95484724 95484793 -106843554 + AT_rich Low_complexity Low_complexity 1 69 0 310 310 54 25 chr4 95486581 95486780 -106841567 - L1P2 LINE L1 -337 5817 5614 7593 181 33 44 chr4 95487119 95487351 -106840996 - L1M4 LINE L1 -3706 2676 2443 969 178 27 120 chr4 95487351 95487610 -106840737 - MER46A DNA MER2_type -1 235 1 7593 181 33 44 chr4 95487610 95488956 -106839391 - L1M4 LINE L1 -3939 2443 799 923 230 81 78 chr4 95488956 95489351 -106838996 - MSTD LTR MaLR 0 396 1 7593 181 33 44 chr4 95489351 95490141 -106838206 - L1M4 LINE L1 -5583 799 2 1624 90 49 0 chr4 95490719 95490963 -106837384 - L1PA13 LINE L1 -3 6160 5905 681 130 0 5 chr4 95490977 95491087 -106837260 + L1PA13 LINE L1 5776 5884 -284 281 338 22 0 chr4 95491456 95491566 -106836781 - MIR SINE MIR -52 156 45 299 127 0 18 chr4 95492001 95492056 -106836291 + (TA)n Simple_repeat Simple_repeat 1 54 0 180 0 0 0 chr4 95492160 95492180 -106836167 + (TA)n Simple_repeat Simple_repeat 1 20 0 198 91 0 0 chr4 95492318 95492351 -106835996 + (CA)n Simple_repeat Simple_repeat 1 33 0 216 0 0 0 chr4 95494231 95494255 -106834092 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 238 295 121 24 chr4 95494404 95494570 -106833777 + L2 LINE L2 3117 3298 -15 383 264 35 63 chr4 95495938 95496112 -106832235 + MIR SINE MIR 94 262 0 210 336 39 39 chr4 95496497 95496625 -106831722 - MIR SINE MIR -68 194 67 1256 259 54 60 chr4 95496962 95497513 -106830834 - MER68 LTR ERV1 -2 560 13 404 293 15 30 chr4 95499364 95499497 -106828850 + MIR3 SINE MIR 73 203 -5 245 202 134 126 chr4 95499524 95499589 -106828758 + L2 LINE L2 3194 3262 -51 2328 87 3 0 chr4 95499589 95499887 -106828460 + AluY SINE Alu 2 300 -11 245 202 134 126 chr4 95499887 95499940 -106828407 + L2 LINE L2 3262 3313 0 1812 168 7 3 chr4 95500041 95500344 -106828003 - AluJo SINE Alu -4 308 5 1916 125 70 0 chr4 95501604 95501891 -106826456 + AluSx SINE Alu 1 307 -5 303 360 9 0 chr4 95501913 95502027 -106826320 - MIR3 SINE MIR -7 201 87 657 313 70 54 chr4 95502174 95502561 -106825786 - L2 LINE L2 0 3313 2921 1975 128 3 10 chr4 95502682 95502972 -106825375 - AluY SINE Alu -8 303 16 2103 156 9 0 chr4 95503178 95503512 -106824835 + MER1B DNA MER1_type 1 337 0 839 288 103 50 chr4 95503822 95504280 -106824067 - L2 LINE L2 -1 3312 2831 484 275 54 89 chr4 95505342 95505600 -106822747 + MIR SINE MIR 3 251 -11 375 269 43 0 chr4 95506938 95507031 -106821316 + MIR SINE MIR 166 262 0 217 279 23 35 chr4 95507170 95507256 -106821091 - MIR SINE MIR -105 157 73 339 320 157 7 chr4 95507289 95507442 -106820905 + MIR3 SINE MIR 10 185 -23 22 0 0 0 chr4 95507500 95507522 -106820825 + AT_rich Low_complexity Low_complexity 1 22 0 202 333 22 0 chr4 95509265 95509355 -106818992 + MIR SINE MIR 73 164 -98 1586 289 38 44 chr4 95509441 95510234 -106818113 + L1MEc LINE L1 324 932 -5352 38816 74 13 3 chr4 95510237 95516285 -106812062 + L1PA6 LINE L1 51 6165 0 571 254 76 46 chr4 95516288 95516684 -106811663 + L1MEc LINE L1 1015 1351 -5033 1621 134 4 8 chr4 95516697 95516935 -106811412 - AluSq SINE Alu -76 237 1 540 279 35 40 chr4 95517033 95517234 -106811113 - MIR SINE MIR -32 230 31 346 132 0 0 chr4 95518007 95518060 -106810287 + MADE1 DNA Mariner 1 53 -27 2779 152 29 25 chr4 95521701 95522188 -106806159 - LTR2B LTR ERV1 0 490 2 41880 198 9 8 chr4 95522193 95529783 -106798564 - HERVE LTR ERV1 -1 7812 209 2355 84 0 0 chr4 95531248 95531544 -106796803 - AluY SINE Alu -15 296 1 4964 112 24 23 chr4 95532141 95532919 -106795428 - MER4E LTR ERV1 0 779 1 456 220 50 0 chr4 95532963 95533063 -106795284 + MIR SINE MIR 146 250 -12 186 43 0 0 chr4 95533070 95533093 -106795254 + (TTA)n Simple_repeat Simple_repeat 2 24 0 415 189 170 19 chr4 95533506 95533612 -106794735 - MER110 LTR ERV1 -11 480 359 1561 94 24 0 chr4 95534136 95534349 -106793998 + AluSg/x SINE Alu 75 292 -18 838 286 46 15 chr4 95534837 95535099 -106793248 - MER110 LTR ERV1 -6 485 216 4383 65 29 6 chr4 95536226 95537238 -106791109 + MER11A LTR ERVK 1 1266 0 1459 217 26 52 chr4 95537314 95537603 -106790744 - MLT1B LTR MaLR -3 387 109 1237 193 26 11 chr4 95537603 95537868 -106790479 - L1PB4 LINE L1 -2 6154 5886 1459 217 26 52 chr4 95537868 95537961 -106790386 - MLT1B LTR MaLR -281 109 15 2142 132 0 0 chr4 95538127 95538437 -106789910 + AluSg SINE Alu 1 310 0 901 294 18 24 chr4 95538455 95538788 -106789559 + MER46C DNA MER2_type 8 338 0 714 284 37 14 chr4 95538857 95539075 -106789272 - MIR SINE MIR -10 252 30 1794 156 0 120 chr4 95539616 95539961 -106788386 + Tigger3(Golem) DNA MER2_type 2 387 -2641 1981 108 0 11 chr4 95539961 95540240 -106788107 - AluSc SINE Alu -15 294 19 1794 156 0 120 chr4 95540240 95540285 -106788062 + Tigger3(Golem) DNA MER2_type 387 3025 -3 207 100 0 0 chr4 95540330 95540360 -106787987 + (T)n Simple_repeat Simple_repeat 1 30 0 3139 166 6 15 chr4 95541481 95542010 -106786337 + MLT2B3 LTR ERVL 1 524 -30 192 125 0 0 chr4 95542029 95542061 -106786286 + (CCTA)n Simple_repeat Simple_repeat 3 34 0 283 322 41 58 chr4 95542941 95543112 -106785235 + MIR SINE MIR 79 246 -16 343 365 82 25 chr4 95543305 95543464 -106784883 + L2 LINE L2 3102 3269 -3 22 56 0 0 chr4 95544295 95544331 -106784016 + AT_rich Low_complexity Low_complexity 1 36 0 260 200 14 0 chr4 95544508 95544578 -106783769 + A-rich Low_complexity Low_complexity 5 75 0 230 387 66 15 chr4 95545799 95545936 -106782411 + L2 LINE L2 3119 3262 -10 209 220 40 0 chr4 95546054 95546104 -106782243 - MIR SINE MIR 0 262 211 208 266 125 0 chr4 95546171 95546235 -106782112 - MIR SINE MIR -171 91 20 2490 57 0 0 chr4 95546554 95546855 -106781492 - AluY SINE Alu -10 301 1 1861 122 0 0 chr4 95548022 95548284 -106780063 - AluSg SINE Alu -4 306 45 204 40 0 0 chr4 95548504 95548529 -106779818 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr4 95548542 95548563 -106779784 + AT_rich Low_complexity Low_complexity 1 21 0 2281 56 0 0 chr4 95548563 95548848 -106779499 - L1PA5 LINE L1 -4 6150 5866 1301 26 0 0 chr4 95548848 95549000 -106779347 + L1PA5 LINE L1 5714 5865 -290 573 291 11 34 chr4 95549086 95549354 -106778993 + MIR SINE MIR 1 262 0 518 267 200 19 chr4 95549998 95550208 -106778139 + MIR SINE MIR 10 257 -5 193 290 54 43 chr4 95550409 95550502 -106777845 + MIR SINE MIR 13 106 -156 1649 190 38 0 chr4 95550988 95551278 -106777069 - AluJo SINE Alu -11 301 1 25 0 0 0 chr4 95552054 95552079 -106776268 + AT_rich Low_complexity Low_complexity 1 25 0 216 268 0 18 chr4 95552655 95552711 -106775636 - MIR3 SINE MIR -33 175 121 21 0 0 0 chr4 95556127 95556148 -106772199 + AT_rich Low_complexity Low_complexity 1 21 0 191 188 0 0 chr4 95556299 95556331 -106772016 + MIR SINE MIR 86 117 -145 354 279 84 32 chr4 95557308 95557462 -106770885 + L2 LINE L2 3152 3313 0 227 271 0 29 chr4 95560494 95560564 -106767783 - L2 LINE L2 -5 3308 3241 485 278 176 58 chr4 95561615 95562115 -106766232 - MLT1L LTR MaLR -26 589 31 184 255 98 0 chr4 95562472 95562523 -106765824 + L2 LINE L2 1652 1707 -1607 21 57 0 0 chr4 95562747 95562782 -106765565 + AT_rich Low_complexity Low_complexity 1 35 0 29 28 0 0 chr4 95562940 95562976 -106765371 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr4 95563562 95563588 -106764759 + AT_rich Low_complexity Low_complexity 1 26 0 25 31 0 0 chr4 95563675 95563707 -106764640 + AT_rich Low_complexity Low_complexity 1 32 0 568 276 32 83 chr4 95563861 95564231 -106764116 - L1MC4 LINE L1 -220 7588 7329 240 303 18 9 chr4 95564205 95564314 -106764033 + L1MC4 LINE L1 7809 7918 -124 * 240 35 0 0 chr4 95564352 95564381 -106763966 + (TAGA)n Simple_repeat Simple_repeat 1 29 0 294 211 174 18 chr4 95564406 95564515 -106763832 + L1MC4 LINE L1 7917 8042 0 201 350 36 44 chr4 95564532 95564669 -106763678 + MIR3 SINE MIR 11 146 -62 392 321 52 15 chr4 95565217 95565351 -106762996 - L2 LINE L2 0 3272 3134 296 159 0 16 chr4 95565877 95565940 -106762407 + CT-rich Low_complexity Low_complexity 4 65 0 240 213 0 0 chr4 95565943 95565990 -106762357 + T-rich Low_complexity Low_complexity 3 49 0 1208 268 100 17 chr4 95566121 95566523 -106761824 + L1MC4 LINE L1 6465 6905 -1137 2223 98 0 0 chr4 95566523 95566809 -106761538 + AluSg SINE Alu 2 287 -23 1208 268 100 17 chr4 95566809 95566827 -106761520 + L1MC4 LINE L1 6905 6920 -1122 1251 155 3 103 chr4 95566862 95567153 -106761194 + AluJo SINE Alu 49 310 -2 2048 219 129 62 chr4 95567170 95567483 -106760864 + L1MC4 LINE L1 6977 7268 -774 2292 91 0 0 chr4 95567483 95567779 -106760568 + AluSc SINE Alu 1 296 -13 2048 219 129 62 chr4 95567779 95568346 -106760001 + L1MC4 LINE L1 7268 7916 -126 315 261 43 9 chr4 95568443 95568558 -106759789 + L1MC4 LINE L1 7920 8038 -4 26 30 0 0 chr4 95569593 95569626 -106758721 + AT_rich Low_complexity Low_complexity 1 33 0 6489 9 0 0 chr4 95569716 95570450 -106757897 - L1PA2 LINE L1 -2 6153 5420 9165 22 0 0 chr4 95570450 95571569 -106756778 + L1P LINE L1 4302 5420 -735 2539 143 7 26 chr4 95571587 95572042 -106756305 - L1PA16 LINE L1 -10 6156 5711 25 31 0 0 chr4 95573006 95573038 -106755309 + AT_rich Low_complexity Low_complexity 1 32 0 12165 237 38 18 chr4 95573515 95573854 -106754493 - L1PA16 LINE L1 -9 7595 7264 2192 113 13 0 chr4 95573854 95574155 -106754192 - AluSx SINE Alu -7 305 1 12165 237 38 18 chr4 95574155 95574772 -106753575 - L1PA16 LINE L1 -340 7264 6661 2271 134 22 8 chr4 95574772 95575131 -106753216 + THE1B LTR MaLR 1 364 0 12165 237 38 18 chr4 95575131 95579603 -106748744 - L1PA16 LINE L1 -943 6661 2182 253 330 9 26 chr4 95580268 95580383 -106747964 - L1PA16 LINE L1 -5277 2297 2185 226 321 24 0 chr4 95580903 95580987 -106747360 - L3 LINE CR1 -130 1447 1362 274 344 0 0 chr4 95580991 95581081 -106747266 - L2 LINE L2 0 3313 3224 21 0 0 0 chr4 95581100 95581121 -106747226 + AT_rich Low_complexity Low_complexity 1 21 0 186 275 0 0 chr4 95581133 95581173 -106747174 - MIR SINE MIR -5 257 218 198 0 0 0 chr4 95581174 95581196 -106747151 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 30424 74 8 10 chr4 95581196 95587377 -106740970 - L1PA5 LINE L1 -8 6146 2 520 296 122 31 chr4 95587509 95587705 -106740642 - MIR SINE MIR -26 236 23 343 276 15 45 chr4 95587799 95587842 -106740505 - L2 LINE L2 -969 2345 2302 2193 120 73 6 chr4 95587842 95588183 -106740164 + THE1B LTR MaLR 1 364 0 343 276 15 45 chr4 95588183 95588273 -106740074 - L2 LINE L2 -1012 2302 2216 222 312 7 71 chr4 95588285 95588426 -106739921 - L3 LINE CR1 -228 1349 1218 27 29 0 0 chr4 95588648 95588682 -106739665 + AT_rich Low_complexity Low_complexity 1 34 0 357 228 78 78 chr4 95588705 95588911 -106739436 + L1MC5 LINE L1 7701 7906 -55 229 80 160 13 chr4 95589219 95589294 -106739053 + (TTAAA)n Simple_repeat Simple_repeat 4 89 0 280 402 67 6 chr4 95589359 95589675 -106738672 + L2 LINE L2 1408 1742 -1572 243 0 0 0 chr4 95591324 95591351 -106736996 + (TG)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr4 95592212 95592234 -106736113 + AT_rich Low_complexity Low_complexity 1 22 0 34749 93 17 11 chr4 95592606 95593435 -106734912 - L1PA6 LINE L1 -5 6149 5327 207 88 0 0 chr4 95593435 95593469 -106734878 + (TTG)n Simple_repeat Simple_repeat 3 36 0 34749 93 17 11 chr4 95593469 95598765 -106729582 - L1PA6 LINE L1 -827 5327 12 389 220 0 33 chr4 95598996 95599087 -106729260 - L2 LINE L2 -1 3312 3225 2253 111 0 0 chr4 95599889 95600187 -106728160 - AluSg1 SINE Alu -11 298 1 303 365 56 16 chr4 95600382 95600508 -106727839 - MIR SINE MIR -67 141 10 5963 109 44 48 chr4 95600565 95601922 -106726425 + SVA Other Other 432 1386 0 1987 154 0 0 chr4 95602042 95602334 -106726013 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr4 95602462 95602483 -106725864 + AT_rich Low_complexity Low_complexity 1 21 0 237 283 18 35 chr4 95602861 95602974 -106725373 + MLT1J LTR MaLR 391 501 -10 230 250 0 0 chr4 95605078 95605134 -106723213 - L2 LINE L2 -300 2972 2917 2411 88 0 0 chr4 95606016 95606323 -106722024 + AluY SINE Alu 1 307 -4 24 32 0 0 chr4 95606987 95607018 -106721329 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 95607135 95607156 -106721191 + AT_rich Low_complexity Low_complexity 1 21 0 1050 72 0 0 chr4 95607156 95607294 -106721053 - L1PA8 LINE L1 -8 6164 6027 28995 63 6 1 chr4 95607526 95612312 -106716035 - L1PA5 LINE L1 0 6154 1344 20502 60 15 3 chr4 95662312 95664903 -106663444 - HERVK9 LTR ERVK -2180 3736 1114 4358 71 12 2 chr4 95664905 95665467 -106662880 - HERVK9 LTR ERVK -5348 568 1 3696 109 0 4 chr4 95665467 95665980 -106662367 - MER9 LTR ERVK 0 511 1 1678 139 56 0 chr4 95665980 95666247 -106662100 - L1PA5 LINE L1 -5864 282 1 2125 122 0 10 chr4 95666494 95666806 -106661541 - AluSq SINE Alu -4 309 1 23 33 0 0 chr4 95666815 95666845 -106661502 + AT_rich Low_complexity Low_complexity 1 30 0 39 0 0 0 chr4 95667032 95667071 -106661276 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr4 95668761 95668797 -106659550 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr4 95668824 95668856 -106659491 + AT_rich Low_complexity Low_complexity 1 32 0 452 209 202 8 chr4 95669860 95669989 -106658358 + MIR SINE MIR 107 260 -2 218 425 8 0 chr4 95670133 95670267 -106658080 + L2 LINE L2 1528 1662 -1652 411 238 0 67 chr4 95670461 95670566 -106657781 + LTR67 LTR ERVL 80 177 -380 590 201 30 37 chr4 95670719 95670883 -106657464 + LTR67 LTR ERVL 391 553 -4 185 280 136 18 chr4 95672400 95672496 -106655851 + MIR SINE MIR 42 145 -96 1844 147 47 0 chr4 95672930 95673209 -106655138 - AluSx SINE Alu -18 294 3 189 0 0 0 chr4 95673628 95673649 -106654698 + (CA)n Simple_repeat Simple_repeat 2 22 0 694 24 0 0 chr4 95674872 95674955 -106653392 - AluY SINE Alu -211 100 18 1385 84 44 0 chr4 95674955 95675158 -106653189 + AluY SINE Alu 95 306 -5 862 204 26 0 chr4 95676398 95676589 -106651758 + Charlie5 DNA MER1_type 27 222 -2390 291 197 0 0 chr4 95676610 95676686 -106651661 + Charlie5 DNA MER1_type 2506 2581 -31 214 344 113 33 chr4 95676774 95676925 -106651422 + L2 LINE L2 3110 3272 0 751 313 81 50 chr4 95677748 95678266 -106650081 - MLT1K LTR MaLR -42 546 13 29 0 0 0 chr4 95678481 95678510 -106649837 + AT_rich Low_complexity Low_complexity 1 29 0 24 77 0 0 chr4 95679180 95679232 -106649115 + AT_rich Low_complexity Low_complexity 1 52 0 234 278 41 41 chr4 95679965 95680062 -106648285 - MIR SINE MIR -4 258 162 963 142 6 11 chr4 95682352 95682535 -106645812 - L1P2 LINE L1 -593 5561 5380 332 256 128 38 chr4 95682651 95682784 -106645563 - L2 LINE L2 -4 3309 3165 23 0 0 0 chr4 95683240 95683263 -106645084 + AT_rich Low_complexity Low_complexity 1 23 0 310 200 0 32 chr4 95684875 95684970 -106643377 + CT-rich Low_complexity Low_complexity 3 94 0 268 337 12 0 chr4 95685104 95685190 -106643157 - L2 LINE L2 -12 3260 3174 205 234 21 0 chr4 95685799 95685846 -106642501 - L2 LINE L2 -78 3235 3188 8677 183 16 6 chr4 95686478 95689085 -106639262 - L1PA13 LINE L1 -7 6156 3413 2622 272 110 21 chr4 95689095 95690243 -106638104 + L1MC4 LINE L1 6650 7899 -143 732 280 35 57 chr4 95690320 95690638 -106637709 - L2 LINE L2 -557 2757 2447 379 260 226 6 chr4 95690873 95691050 -106637297 + MIR SINE MIR 2 217 -45 2857 124 2 2 chr4 95692002 95692437 -106635910 - L1PA16 LINE L1 -9 6157 5723 230 67 0 0 chr4 95692438 95692468 -106635879 + L1M1 LINE L1 5851 5880 -422 229 330 30 10 chr4 95693811 95693911 -106634436 + L2 LINE L2 3179 3280 -33 3174 98 16 2 chr4 95694613 95695060 -106633287 - MLT2A2 LTR ERVL 0 453 1 2353 67 0 3 chr4 95695589 95695886 -106632461 - AluY SINE Alu -15 296 1 6167 133 98 116 chr4 95696220 95697803 -106630544 - pTR5 LTR ERV1 -143 2295 741 573 305 86 5 chr4 95698183 95698393 -106629954 + MLT1K LTR MaLR 321 547 -41 1926 136 41 0 chr4 95698575 95698870 -106629477 - AluSx SINE Alu -5 307 1 622 154 0 17 chr4 95700057 95700174 -106628173 + L1MA9 LINE L1 6162 6276 -36 279 405 38 0 chr4 95700975 95701106 -106627241 - L2 LINE L2 -37 3235 3100 21 36 0 0 chr4 95701191 95701219 -106627128 + AT_rich Low_complexity Low_complexity 1 28 0 950 198 20 0 chr4 95701966 95702163 -106626184 + MER3 DNA MER1_type 5 205 -4 4944 164 15 19 chr4 95703542 95704592 -106623755 + L1MA4A LINE L1 4641 5663 -640 2393 61 0 3 chr4 95704592 95704889 -106623458 - AluY SINE Alu -15 296 1 4944 164 15 19 chr4 95704889 95705528 -106622819 + L1MA4A LINE L1 5663 6303 0 6767 179 13 6 chr4 95705810 95707729 -106620618 + L1PB1 LINE L1 3853 5783 -368 1669 108 4 0 chr4 95707729 95707960 -106620387 + AluSq SINE Alu 71 302 -11 447 148 0 30 chr4 95707965 95708066 -106620281 + (TA)n Simple_repeat Simple_repeat 2 99 0 2454 104 0 24 chr4 95708067 95708443 -106619904 + L1PB1 LINE L1 5785 6151 0 22 0 0 0 chr4 95708631 95708653 -106619694 + AT_rich Low_complexity Low_complexity 1 22 0 648 211 201 72 chr4 95709550 95709829 -106618518 - MER46C DNA MER2_type -9 329 15 2083 109 119 24 chr4 95710755 95711166 -106617181 + LTR7 LTR ERV1 1 450 0 23 0 0 0 chr4 95712973 95712996 -106615351 + AT_rich Low_complexity Low_complexity 1 23 0 2375 63 3 19 chr4 95713162 95713478 -106614869 + AluY SINE Alu 1 311 0 2010 163 9 6 chr4 95713537 95713887 -106614460 + THE1A LTR MaLR 5 355 0 29 47 0 0 chr4 95714803 95714846 -106613501 + AT_rich Low_complexity Low_complexity 1 43 0 568 159 45 0 chr4 95714943 95715031 -106613316 + 5S rRNA rRNA 1 92 -29 23 68 0 0 chr4 95715915 95715959 -106612388 + AT_rich Low_complexity Low_complexity 1 44 0 398 315 40 7 chr4 95716633 95716782 -106611565 - MIR SINE MIR -56 206 53 21 36 0 0 chr4 95717351 95717379 -106610968 + AT_rich Low_complexity Low_complexity 1 28 0 394 270 221 5 chr4 95717380 95717584 -106610763 - MIR SINE MIR -1 261 14 283 321 61 30 chr4 95717608 95717739 -106610608 - MIR SINE MIR -46 216 82 247 350 115 27 chr4 95718075 95718258 -106610089 - MIR SINE MIR -62 200 2 * 266 298 57 64 chr4 95718258 95718393 -106609954 + L3 LINE CR1 1114 1247 -330 493 285 14 21 chr4 95718504 95718648 -106609699 - MER5B DNA MER1_type 0 178 36 2208 70 0 11 chr4 95718650 95718970 -106609377 + AluY SINE Alu 1 317 0 270 305 12 0 chr4 95719200 95719282 -106609065 + MIR SINE MIR 105 187 -75 3536 56 5 0 chr4 95719801 95720245 -106608102 + L1PA7 LINE L1 5683 6128 -26 301 238 336 7 chr4 95720816 95720959 -106607388 + MIR SINE MIR 59 248 -14 306 0 0 0 chr4 95722210 95722244 -106606103 + (TG)n Simple_repeat Simple_repeat 2 35 0 5038 143 42 53 chr4 95723045 95724128 -106604219 - MER11C LTR ERVK 0 1071 1 273 333 222 0 chr4 95724398 95724551 -106603796 - MIR SINE MIR -66 196 10 577 210 34 0 chr4 95724684 95724803 -106603544 + L1MB3 LINE L1 5880 6002 -181 1586 226 40 3 chr4 95724999 95725375 -106602972 - L1MB3 LINE L1 -12 6171 5782 698 204 44 17 chr4 95725416 95725597 -106602750 - L1MEd LINE L1 -3418 2964 2779 1986 128 43 9 chr4 95725654 95726031 -106602316 + MSTA LTR MaLR 1 428 0 5525 163 55 42 chr4 95726080 95726242 -106602105 - L1MEd LINE L1 -3772 2610 2452 2267 157 30 25 chr4 95726242 95726674 -106601673 - Tigger2a DNA MER2_type 0 434 1 5525 163 55 42 chr4 95726674 95727825 -106600522 - L1MEd LINE L1 -3930 2452 1296 1526 192 43 26 chr4 95728251 95728600 -106599747 + MLT1A1 LTR MaLR 1 355 -10 363 314 64 21 chr4 95728606 95728746 -106599601 + MIR SINE MIR 85 230 -32 24 0 0 0 chr4 95729131 95729155 -106599192 + AT_rich Low_complexity Low_complexity 1 24 0 259 333 69 10 chr4 95729801 95729903 -106598444 - L2 LINE L2 -26 3246 3139 235 81 0 0 chr4 95730569 95730606 -106597741 - L1MC3 LINE L1 -16 7769 7733 4762 167 121 60 chr4 95730798 95731824 -106596523 - L1MC3 LINE L1 0 7785 6661 1921 153 7 3 chr4 95731824 95732131 -106596216 - AluSx SINE Alu -4 308 1 4762 167 121 60 chr4 95732131 95732399 -106595948 - L1MC3 LINE L1 -1124 6661 6411 2494 54 0 3 chr4 95732401 95732698 -106595649 - AluY SINE Alu -15 296 1 559 196 49 7 chr4 95732716 95732859 -106595488 - L1MB3 LINE L1 -829 5515 5367 378 61 0 0 chr4 95732860 95732909 -106595438 + (TG)n Simple_repeat Simple_repeat 1 49 0 595 144 0 0 chr4 95732919 95733016 -106595331 - L1MA2 LINE L1 0 6304 6208 1752 36 0 18 chr4 95733019 95733244 -106595103 - L1M1 LINE L1 -501 5801 5581 17529 161 62 18 chr4 95733244 95733722 -106594625 - L1M1 LINE L1 -4066 3499 3043 2235 104 3 0 chr4 95733722 95734020 -106594327 + AluSp SINE Alu 1 299 -14 17529 161 62 18 chr4 95734020 95736882 -106591465 - L1M1 LINE L1 -4522 3043 15 1148 248 41 6 chr4 95736886 95737249 -106591098 - L1MB3 LINE L1 -807 5339 4964 219 340 132 54 chr4 95737390 95737728 -106590619 + L2 LINE L2 2796 3156 -157 2417 63 0 3 chr4 95738092 95738391 -106589956 + AluY SINE Alu 1 298 -13 21 0 0 0 chr4 95738548 95738569 -106589778 + AT_rich Low_complexity Low_complexity 1 21 0 720 276 75 59 chr4 95739146 95739342 -106589005 + MIR SINE MIR 8 210 -52 2046 115 0 7 chr4 95739342 95739638 -106588709 + AluYa5 SINE Alu 1 294 -17 720 276 75 59 chr4 95739638 95739680 -106588667 + MIR SINE MIR 210 250 -12 26 0 0 0 chr4 95739821 95739847 -106588500 + AT_rich Low_complexity Low_complexity 1 26 0 969 261 173 33 chr4 95739897 95740428 -106587919 - MLT1E1 LTR MaLR 0 654 1 203 114 23 0 chr4 95740722 95740766 -106587581 + CT-rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr4 95741054 95741085 -106587262 + AT_rich Low_complexity Low_complexity 1 31 0 2381 73 10 3 chr4 95741958 95742261 -106586086 - AluSc SINE Alu -4 305 1 210 295 0 0 chr4 95743331 95743392 -106584955 - MIR SINE MIR -13 249 189 257 267 120 0 chr4 95743434 95743509 -106584838 - MIR SINE MIR -177 85 2 319 333 114 22 chr4 95743540 95743768 -106584579 + L3 LINE CR1 1050 1298 -279 21 36 0 0 chr4 95745169 95745197 -106583150 + AT_rich Low_complexity Low_complexity 1 28 0 223 256 0 0 chr4 95745319 95745362 -106582985 + polypyrimidine Low_complexity Low_complexity 1 43 0 907 321 35 8 chr4 95745967 95746341 -106582006 - L1MC4a LINE L1 -1877 5931 5548 376 301 56 86 chr4 95747197 95747618 -106580729 - L1ME LINE L1 -355 5811 5403 26 30 0 0 chr4 95747751 95747784 -106580563 + AT_rich Low_complexity Low_complexity 1 33 0 361 313 62 39 chr4 95748381 95748466 -106579881 - HAL1b LINE L1 -768 580 498 3585 87 14 0 chr4 95748466 95748962 -106579385 - L1PA8 LINE L1 -5 6167 5665 361 313 62 39 chr4 95748962 95749135 -106579212 - HAL1b LINE L1 -850 498 316 22 80 0 0 chr4 95749940 95749990 -106578357 + AT_rich Low_complexity Low_complexity 1 50 0 23 33 0 0 chr4 95750066 95750096 -106578251 + AT_rich Low_complexity Low_complexity 1 30 0 1147 168 28 28 chr4 95750708 95750958 -106577389 + L1PA16 LINE L1 5912 6161 -5 231 88 0 0 chr4 95751001 95751035 -106577312 + (CA)n Simple_repeat Simple_repeat 1 34 0 500 308 76 40 chr4 95751416 95751666 -106576681 - MIR SINE MIR 0 262 4 1021 53 0 0 chr4 95752330 95752462 -106575885 + L1PA4 LINE L1 6021 6152 -3 23 54 0 0 chr4 95753049 95753086 -106575261 + AT_rich Low_complexity Low_complexity 1 37 0 321 268 54 36 chr4 95753708 95753820 -106574527 - L2 LINE L2 0 3313 3200 29 0 0 0 chr4 95754095 95754124 -106574223 + AT_rich Low_complexity Low_complexity 1 29 0 222 287 30 98 chr4 95754252 95754416 -106573931 - L2 LINE L2 0 3313 3161 21 36 0 0 chr4 95754642 95754670 -106573677 + AT_rich Low_complexity Low_complexity 1 28 0 2746 191 60 2 chr4 95755975 95756494 -106571853 - Tigger7 DNA MER2_type -1938 549 1 180 297 94 0 chr4 95757473 95757537 -106570810 + L2 LINE L2 3238 3307 -6 382 305 92 17 chr4 95757728 95757902 -106570445 - MIR SINE MIR -70 192 6 396 111 0 0 chr4 95758685 95758748 -106569599 + (CA)n Simple_repeat Simple_repeat 1 63 0 644 271 247 23 chr4 95758766 95759150 -106569197 - L2 LINE L2 -15 3298 3001 1788 145 25 41 chr4 95759150 95759516 -106568831 - L1MA7 LINE L1 0 6291 5932 644 271 247 23 chr4 95759516 95759765 -106568582 - L2 LINE L2 -312 3001 2449 654 314 83 4 chr4 95759982 95760091 -106568256 - MIR SINE MIR -1 261 162 2380 142 0 6 chr4 95760091 95760457 -106567890 - THE1B LTR MaLR 0 364 1 654 314 83 4 chr4 95760457 95760589 -106567758 - MIR SINE MIR -100 162 1 305 264 0 0 chr4 95760753 95760825 -106567522 + MIR SINE MIR 184 255 -7 265 266 71 35 chr4 95760863 95760976 -106567371 - L2 LINE L2 0 3272 3156 231 125 0 0 chr4 95761149 95761189 -106567158 + (CA)n Simple_repeat Simple_repeat 2 41 0 1002 260 62 17 chr4 95761200 95761488 -106566859 + LTR16C LTR ERVL 186 486 -5 206 289 180 0 chr4 95762200 95762328 -106566019 - L2 LINE L2 -869 2445 2295 509 247 52 107 chr4 95762496 95762767 -106565580 - MLT1H LTR MaLR -180 369 114 476 263 120 47 chr4 95763087 95763491 -106564856 + Charlie2 DNA MER1_type 2317 2767 -95 559 192 8 8 chr4 95763491 95763611 -106564736 - L1PB4 LINE L1 -12 6144 6025 476 263 120 47 chr4 95763611 95763715 -106564632 + Charlie2 DNA MER1_type 2767 2862 0 310 365 17 17 chr4 95763807 95763922 -106564425 + L2 LINE L2 3143 3257 -15 22 35 0 0 chr4 95764664 95764693 -106563654 + AT_rich Low_complexity Low_complexity 1 29 0 1279 81 70 5 chr4 95765369 95765554 -106562793 + MER30 DNA MER1_type 1 197 -33 1070 71 48 30 chr4 95765855 95766023 -106562324 - MER30 DNA MER1_type -41 189 19 977 179 52 148 chr4 95766209 95766499 -106561848 + MLT1C LTR MaLR 129 467 0 192 125 0 0 chr4 95766951 95766983 -106561364 + (CA)n Simple_repeat Simple_repeat 1 32 0 399 21 0 0 chr4 95770236 95770284 -106558063 + (CA)n Simple_repeat Simple_repeat 2 49 0 2398 109 6 19 chr4 95770284 95770650 -106557697 + THE1B LTR MaLR 1 361 -3 258 105 0 0 chr4 95770650 95770688 -106557659 + (CA)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr4 95772357 95772380 -106555967 + AT_rich Low_complexity Low_complexity 1 23 0 1654 194 0 28 chr4 95772513 95772832 -106555515 - AluJb SINE Alu -2 310 1 894 166 66 17 chr4 95772834 95773015 -106555332 - L1MC3 LINE L1 -123 7662 7473 557 311 31 10 chr4 95773288 95773481 -106554866 - L2 LINE L2 -4 3309 3113 1120 314 84 41 chr4 95773529 95774240 -106554107 - L2 LINE L2 -338 2976 2235 330 87 0 0 chr4 95774348 95774394 -106553953 + (GGAA)n Simple_repeat Simple_repeat 2 47 0 196 75 25 25 chr4 95774775 95774815 -106553532 + (TA)n Simple_repeat Simple_repeat 1 40 0 21 36 0 0 chr4 95776526 95776554 -106551793 + AT_rich Low_complexity Low_complexity 1 28 0 427 284 47 54 chr4 95776781 95776929 -106551418 + MIR SINE MIR 116 262 0 24 0 0 0 chr4 95777172 95777196 -106551151 + AT_rich Low_complexity Low_complexity 1 24 0 417 234 22 58 chr4 95777225 95777362 -106550985 - MER5A DNA MER1_type 0 189 58 22 35 0 0 chr4 95777939 95777968 -106550379 + AT_rich Low_complexity Low_complexity 1 29 0 1387 180 59 16 chr4 95778860 95779165 -106549182 + MER7A DNA MER2_type 31 346 0 25 31 0 0 chr4 95779362 95779394 -106548953 + AT_rich Low_complexity Low_complexity 1 32 0 1987 161 217 0 chr4 95779826 95780236 -106548111 - Tigger1 DNA MER2_type -341 2077 1579 6529 141 5 4 chr4 95780349 95781363 -106546984 + Harlequin LTR ERV1 5882 6896 0 3828 48 25 0 chr4 95781364 95781841 -106546506 + LTR2B LTR ERV1 2 490 0 505 278 129 27 chr4 95781856 95782190 -106546157 + L2 LINE L2 2934 3301 -12 1412 206 32 3 chr4 95782484 95782794 -106545553 - THE1B LTR MaLR -45 319 1 2001 148 137 8 chr4 95782997 95783376 -106544971 + MSTA LTR MaLR 1 428 0 4683 200 32 2 chr4 95783376 95784301 -106544046 + MSTA-int LTR MaLR 1 953 -698 291 246 8 31 chr4 95784404 95784534 -106543813 + G-rich Low_complexity Low_complexity 4 130 0 192 77 0 0 chr4 95786731 95786757 -106541590 + (GA)n Simple_repeat Simple_repeat 2 27 0 565 253 270 20 chr4 95787783 95788194 -106540153 - L2 LINE L2 0 3313 2791 3071 240 108 104 chr4 95788432 95790515 -106537832 - L1MC4a LINE L1 -96 7712 5621 282 115 0 0 chr4 95792050 95792102 -106536245 + (CA)n Simple_repeat Simple_repeat 2 53 0 1125 197 17 77 chr4 95793114 95793414 -106534933 - AluJb SINE Alu -30 282 1 233 351 55 12 chr4 95793612 95793777 -106534570 + L1MC4a LINE L1 6418 6589 -1219 478 183 148 134 chr4 95793837 95794107 -106534240 + L1MC5 LINE L1 7504 7782 -179 2149 95 0 7 chr4 95794107 95794391 -106533956 + AluSq SINE Alu 3 284 -29 478 183 148 134 chr4 95794391 95794492 -106533855 + L1MC5 LINE L1 7782 7880 -81 33 43 0 0 chr4 95794763 95794810 -106533537 + AT_rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr4 95794941 95794969 -106533378 + AT_rich Low_complexity Low_complexity 1 28 0 4206 135 1 19 chr4 95795727 95796392 -106531955 - L1P LINE L1 -5491 655 3 1749 157 34 29 chr4 95796392 95796743 -106531604 + Tigger1 DNA MER2_type 2066 2418 0 552 274 0 0 chr4 95797127 95797244 -106531103 + MER58B DNA MER1_type 223 339 -2 189 0 0 0 chr4 95797872 95797893 -106530454 + (A)n Simple_repeat Simple_repeat 1 21 0 491 325 35 45 chr4 95799639 95799950 -106528397 + MLT1I LTR MaLR 74 381 -28 1114 101 28 17 chr4 95800217 95800396 -106527951 - AluSc SINE Alu -2 307 127 188 354 51 0 chr4 95801358 95801437 -106526910 - MIR3 SINE MIR -19 189 107 464 111 0 49 chr4 95802103 95802184 -106526163 + THE1B-int LTR MaLR 1504 1580 0 767 124 175 7 chr4 95802184 95802321 -106526026 + THE1B LTR MaLR 1 160 -268 271 219 82 27 chr4 95802378 95802451 -106525896 + MER91A DNA MER1_type 119 195 -1 2097 141 126 5 chr4 95803470 95803852 -106524495 - MSTA LTR MaLR 0 428 1 3679 183 11 16 chr4 95803852 95804579 -106523768 - MSTA-int LTR MaLR 0 1580 858 982 126 0 0 chr4 95804708 95804851 -106523496 + THE1B LTR MaLR 221 363 -1 296 301 134 5 chr4 95804999 95805185 -106523162 - L1M2 LINE L1 -1906 4942 4733 1094 199 33 48 chr4 95805230 95805501 -106522846 - MLT1A1 LTR MaLR -31 334 68 268 280 106 26 chr4 95805524 95805903 -106522444 - L1M2 LINE L1 -2797 4051 3643 1249 245 12 13 chr4 95806505 95806845 -106521502 + Tigger7 DNA MER2_type 1 2491 0 350 327 10 0 chr4 95806850 95806951 -106521396 - MIR3 SINE MIR -8 200 99 239 322 161 6 chr4 95807095 95807275 -106521072 + L2 LINE L2 2754 2961 -353 258 293 0 0 chr4 95807764 95807846 -106520501 + L1M4 LINE L1 3544 3625 -2521 5145 227 71 40 chr4 95807891 95809576 -106518771 + L1M4 LINE L1 3629 5366 -780 645 201 25 25 chr4 95809584 95809743 -106518604 + L1MC/D LINE L1 4632 4790 -1356 1698 161 26 0 chr4 95809766 95810071 -106518276 + L1MC/D LINE L1 5369 5681 -652 609 165 0 0 chr4 95810272 95810363 -106517984 + AluS SINE Alu 1 91 -221 274 240 110 0 chr4 95811111 95811211 -106517136 - L1MC4 LINE L1 -18 8024 7914 10071 208 38 29 chr4 95811319 95813745 -106514602 - L1 LINE L1 -1514 5334 2856 194 0 0 37 chr4 95813745 95813772 -106514575 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 10071 208 38 29 chr4 95813772 95814799 -106513548 - L1 LINE L1 -3992 2856 1840 10231 211 32 15 chr4 95815070 95817802 -106510545 - L1M2 LINE L1 -3936 2912 2 23 0 0 0 chr4 95819596 95819619 -106508728 + AT_rich Low_complexity Low_complexity 1 23 0 308 240 0 62 chr4 95825111 95825207 -106503140 + L1MC4 LINE L1 6614 6703 -1339 255 125 0 0 chr4 95825207 95825247 -106503100 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 415 310 146 36 chr4 95825259 95825794 -106502553 + L1MCa LINE L1 32 610 -5813 1728 285 56 26 chr4 95825881 95827276 -106501071 + L1MCa LINE L1 814 2696 -4246 36 40 0 0 chr4 95828094 95828144 -106500203 + AT_rich Low_complexity Low_complexity 1 50 0 2494 146 17 2 chr4 95828417 95828835 -106499512 - MSTA LTR MaLR 0 428 5 211 305 148 23 chr4 95829111 95829239 -106499108 - L2 LINE L2 -237 3035 2892 1991 103 0 4 chr4 95831552 95831813 -106496534 - AluSx SINE Alu -44 268 9 2523 134 14 60 chr4 95831823 95832336 -106496011 - L1MA3 LINE L1 -163 6142 5654 8890 158 9 11 chr4 95833903 95835373 -106492974 + Tigger1 DNA MER2_type 2 1469 -949 1885 134 14 10 chr4 95835373 95835664 -106492683 + AluSx SINE Alu 1 292 -20 8890 158 9 11 chr4 95835664 95835708 -106492639 + Tigger1 DNA MER2_type 1469 1512 -906 669 262 58 9 chr4 95835813 95836038 -106492309 + MLT1C LTR MaLR 232 467 0 22 35 0 0 chr4 95836742 95836771 -106491576 + AT_rich Low_complexity Low_complexity 1 29 0 211 305 148 23 chr4 95838297 95838425 -106489922 + L2 LINE L2 2892 3035 -237 1224 172 25 8 chr4 95838699 95838937 -106489410 + MSTA LTR MaLR 3 244 -184 245 204 10 102 chr4 95839256 95839354 -106488993 - MER5A DNA MER1_type -100 89 1 510 17 0 0 chr4 95840837 95840896 -106487451 + (CA)n Simple_repeat Simple_repeat 2 60 0 27 29 0 0 chr4 95841312 95841346 -106487001 + AT_rich Low_complexity Low_complexity 1 34 0 377 228 14 5 chr4 95841595 95841812 -106486535 + (TA)n Simple_repeat Simple_repeat 1 219 0 27 49 0 0 chr4 95842684 95842725 -106485622 + AT_rich Low_complexity Low_complexity 1 41 0 306 266 103 75 chr4 95843385 95843599 -106484748 + MLT1C LTR MaLR 22 241 -226 22 0 0 0 chr4 95846205 95846227 -106482120 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 95847281 95847302 -106481045 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr4 95847716 95847755 -106480592 + AT_rich Low_complexity Low_complexity 1 39 0 34954 59 3 3 chr4 95848026 95852654 -106475693 + L1P2 LINE L1 815 5441 -713 14322 111 16 12 chr4 95852755 95854910 -106473437 - Harlequin LTR ERV1 -1382 5514 3352 6886 53 25 12 chr4 95854909 95855899 -106472448 - Harlequin LTR ERV1 -4322 2574 1572 * 4131 92 29 37 chr4 95855883 95856725 -106471622 - Harlequin LTR ERV1 -5969 927 1 * 3807 45 21 6 chr4 95856725 95857208 -106471139 - LTR2B LTR ERV1 0 490 1 217 298 269 18 chr4 95857664 95857835 -106470512 - MIR SINE MIR -29 233 20 1655 157 55 3 chr4 95859098 95859391 -106468956 - AluSx SINE Alu -4 308 1 590 330 19 9 chr4 95859670 95859885 -106468462 - MIR SINE MIR -41 221 5 24 32 0 0 chr4 95860497 95860528 -106467819 + AT_rich Low_complexity Low_complexity 1 31 0 22 80 0 0 chr4 95860611 95860661 -106467686 + AT_rich Low_complexity Low_complexity 1 50 0 34 24 0 0 chr4 95860795 95860836 -106467511 + AT_rich Low_complexity Low_complexity 1 41 0 891 262 93 3 chr4 95861224 95861556 -106466791 - MER113 DNA MER1_type? -155 366 5 1681 174 70 12 chr4 95861582 95861926 -106466421 + MLT1A1 LTR MaLR 1 364 -1 1905 146 16 3 chr4 95862662 95862970 -106465377 + AluSx SINE Alu 1 312 0 929 200 49 9 chr4 95863068 95863293 -106465054 - L1MC2 LINE L1 -9 6335 6102 745 136 34 0 chr4 95863394 95863512 -106464835 + AluSg/x SINE Alu 164 285 -27 186 71 0 0 chr4 95863512 95863540 -106464807 + (CTAAA)n Simple_repeat Simple_repeat 3 30 0 27 73 0 0 chr4 95863997 95864052 -106464295 + AT_rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr4 95864808 95864836 -106463511 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr4 95865022 95865060 -106463287 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr4 95865358 95865388 -106462959 + AT_rich Low_complexity Low_complexity 1 30 0 2303 229 103 42 chr4 95865673 95866544 -106461803 + L1MC2 LINE L1 1 879 -5166 * 6838 213 32 29 chr4 95866534 95866574 -106461773 + L1MC2 LINE L1 3579 3617 -3145 2114 88 7 3 chr4 95866574 95866871 -106461476 + AluY SINE Alu 1 298 -13 6838 213 32 29 chr4 95866871 95869469 -106458878 + L1MC2 LINE L1 3617 6230 -532 2001 104 32 0 chr4 95869469 95869748 -106458599 + AluSc SINE Alu 3 290 -19 6838 213 32 29 chr4 95869748 95870074 -106458273 + L1MC2 LINE L1 6230 6553 -209 219 191 32 0 chr4 95920086 95920153 -106408194 + (CCCA)n Simple_repeat Simple_repeat 1 69 0 201 237 17 0 chr4 95920385 95920444 -106407903 + (CACAC)n Simple_repeat Simple_repeat 2 61 0 447 176 0 0 chr4 95920545 95920619 -106407728 - AluJ/FLAM SINE Alu -238 74 1 645 265 36 5 chr4 95920621 95920844 -106407503 - L1M4 LINE L1 -3252 2894 2665 284 225 0 11 chr4 95920936 95921025 -106407322 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 273 98 0 0 chr4 95921375 95921416 -106406931 + (CA)n Simple_repeat Simple_repeat 2 42 0 639 231 43 32 chr4 95921875 95922061 -106406286 - MER5A DNA MER1_type -1 188 1 27 49 0 0 chr4 95923391 95923432 -106404915 + AT_rich Low_complexity Low_complexity 1 41 0 205 291 157 22 chr4 95926200 95926334 -106402013 - L2 LINE L2 0 3272 3121 199 200 18 18 chr4 95926677 95926732 -106401615 - L2 LINE L2 -203 3069 3015 27 73 0 0 chr4 95926733 95926788 -106401559 + AT_rich Low_complexity Low_complexity 1 55 0 390 271 139 42 chr4 95927053 95927219 -106401128 + MIR SINE MIR 75 256 -6 29 47 0 0 chr4 95927426 95927469 -106400878 + AT_rich Low_complexity Low_complexity 1 43 0 338 303 81 52 chr4 95928574 95928785 -106399562 - HAL1 LINE L1 -2260 247 31 249 101 47 54 chr4 95930274 95930422 -106397925 + (TA)n Simple_repeat Simple_repeat 1 147 0 23163 65 2 2 chr4 95930423 95934270 -106394077 - L1PA5 LINE L1 -6 6148 2298 2388 61 3 0 chr4 95934270 95934582 -106393765 + L1P LINE L1 4934 5246 -900 * 2607 169 32 7 chr4 95934570 95935031 -106393316 - L1PA5 LINE L1 -5671 475 3 231 250 67 19 chr4 95935033 95935137 -106393210 - MIR SINE MIR -58 204 96 332 93 0 37 chr4 95935144 95935198 -106393149 + L1P LINE L1 2193 2244 -3902 1863 182 96 13 chr4 95936530 95936915 -106391432 - MSTB1 LTR MaLR -13 419 3 435 295 17 46 chr4 95936915 95937086 -106391261 - LTR16C LTR ERVL -230 261 96 1727 113 31 0 chr4 95938701 95938958 -106389389 - AluSx SINE Alu -5 307 43 29 28 0 0 chr4 95940063 95940099 -106388248 + AT_rich Low_complexity Low_complexity 1 36 0 366 23 0 0 chr4 95940502 95940545 -106387802 + (TA)n Simple_repeat Simple_repeat 1 43 0 402 198 74 41 chr4 95940859 95940980 -106387367 + MLT1E2 LTR MaLR 60 184 -442 3519 287 41 33 chr4 95940987 95942179 -106386168 + L1MA9 LINE L1 1 1182 -4852 1483 185 3 58 chr4 95942179 95942492 -106385855 + AluJo SINE Alu 1 296 -16 3519 287 41 33 chr4 95942492 95944187 -106384160 + L1MA9 LINE L1 1182 2610 -3424 * 5516 148 22 8 chr4 95944172 95945144 -106383203 - L1PA11 LINE L1 -1739 4407 3423 6027 110 23 2 chr4 95945144 95946882 -106381465 + L1PA11 LINE L1 4415 6169 -5 10375 188 51 23 chr4 95946889 95950165 -106378182 + L1MA9 LINE L1 2594 5969 -231 1859 246 93 21 chr4 95950169 95950686 -106377661 - MLT2B3 LTR ERVL 0 554 1 463 226 38 0 chr4 95950690 95950796 -106377551 + L1MA9 LINE L1 6069 6178 -22 35 24 0 0 chr4 95950796 95950838 -106377509 + AT_rich Low_complexity Low_complexity 1 42 0 1347 232 87 6 chr4 95950923 95951246 -106377101 + MLT1E2 LTR MaLR 270 618 -8 1959 135 0 14 chr4 95952162 95952459 -106375888 + AluSq SINE Alu 1 293 -20 2846 3 0 3 chr4 95953020 95953335 -106375012 - AluYb8 SINE Alu -4 314 1 664 230 103 6 chr4 95953543 95953717 -106374630 + MIR SINE MIR 70 260 -2 1183 167 31 0 chr4 95954686 95954914 -106373433 + L1MB1 LINE L1 5929 6163 -5 4624 76 3 0 chr4 95954914 95955520 -106372827 - L1PA7 LINE L1 -5 6149 5541 21 0 0 0 chr4 95955814 95955835 -106372512 + AT_rich Low_complexity Low_complexity 1 21 0 182 200 57 0 chr4 95955839 95955874 -106372473 - MIR SINE MIR -8 254 218 737 275 70 0 chr4 95955883 95956112 -106372235 - MIR SINE MIR -11 251 7 245 344 3 10 chr4 95956427 95956523 -106371824 + MIR3 SINE MIR 74 170 -38 238 263 150 0 chr4 95956608 95956688 -106371659 + MIR SINE MIR 96 187 -75 25 51 0 0 chr4 95956731 95956770 -106371577 + AT_rich Low_complexity Low_complexity 1 39 0 2234 69 0 7 chr4 95959974 95960297 -106368050 + AluY SINE Alu 1 311 0 2143 93 4 0 chr4 95960506 95960786 -106367561 - AluSp SINE Alu -32 281 1 928 295 96 28 chr4 95960794 95960955 -106367392 - L1MC4a LINE L1 -1879 5929 5780 1672 150 72 33 chr4 95960955 95961316 -106367031 + THE1C LTR MaLR 1 375 0 928 295 96 28 chr4 95961316 95961787 -106366560 - L1MC4a LINE L1 -2028 5780 5254 23 68 0 0 chr4 95961843 95961887 -106366460 + AT_rich Low_complexity Low_complexity 1 44 0 353 297 34 61 chr4 95962163 95962217 -106366130 + L2 LINE L2 3129 3183 -89 2911 166 45 40 chr4 95962217 95962815 -106365532 + MER7C DNA MER2_type 2 602 0 353 297 34 61 chr4 95962815 95962908 -106365439 + L2 LINE L2 3183 3272 0 1802 162 3 10 chr4 95964176 95964473 -106363874 + AluJb SINE Alu 1 295 -17 205 367 0 0 chr4 95965007 95965086 -106363261 + L2 LINE L2 2617 2695 -619 498 138 0 0 chr4 95965112 95965192 -106363155 + MADE1 DNA Mariner 1 80 0 214 299 0 15 chr4 95965203 95965270 -106363077 + L2 LINE L2 2840 2905 -367 287 238 0 38 chr4 95965283 95965363 -106362984 + MIR SINE MIR 175 251 -11 43551 43 3 6 chr4 95966511 95972663 -106355684 + L1HS LINE L1 3 6131 -24 220 67 0 44 chr4 95972663 95972708 -106355639 + (TAAAA)n Simple_repeat Simple_repeat 1 43 0 223 71 48 0 chr4 95972745 95972787 -106355560 + (TA)n Simple_repeat Simple_repeat 1 44 0 2154 123 0 0 chr4 95973469 95973769 -106354578 - AluSx SINE Alu -12 300 1 22 0 0 0 chr4 95974287 95974309 -106354038 + AT_rich Low_complexity Low_complexity 1 22 0 254 206 62 21 chr4 95974651 95974748 -106353599 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 213 170 0 38 chr4 95975081 95975134 -106353213 + T-rich Low_complexity Low_complexity 2 52 0 180 0 0 0 chr4 95975599 95975619 -106352728 + (TG)n Simple_repeat Simple_repeat 1 20 0 237 178 55 0 chr4 95975640 95975713 -106352634 + (TA)n Simple_repeat Simple_repeat 1 77 0 26 0 0 0 chr4 95975737 95975763 -106352584 + AT_rich Low_complexity Low_complexity 1 26 0 864 279 90 45 chr4 95977773 95978149 -106350198 - L2 LINE L2 0 3313 2921 397 331 16 0 chr4 95978544 95978665 -106349682 - L1MEc LINE L1 -6106 290 168 31 0 0 0 chr4 95978709 95978740 -106349607 + AT_rich Low_complexity Low_complexity 1 31 0 2471 281 69 25 chr4 95979439 95979958 -106348389 + L1MEc LINE L1 71 566 -5830 1519 221 11 22 chr4 95979958 95980325 -106348022 - MLT1A1 LTR MaLR -2 363 1 2471 281 69 25 chr4 95980325 95980825 -106347522 + L1MEc LINE L1 566 1135 -5261 1873 191 43 60 chr4 95983134 95983648 -106344699 - MLT1D LTR MaLR 0 505 1 1467 251 3 22 chr4 95984310 95984681 -106343666 + MLT1A1 LTR MaLR 1 364 -1 1227 217 44 31 chr4 95985036 95985396 -106342951 - MLT1A1 LTR MaLR 0 365 1 22 35 0 0 chr4 95985994 95986023 -106342324 + AT_rich Low_complexity Low_complexity 1 29 0 1581 181 10 16 chr4 95986404 95986708 -106341639 + AluJo SINE Alu 1 302 -10 4002 162 42 36 chr4 95987046 95987911 -106340436 - L1 LINE L1 -1017 5129 4260 226 296 12 12 chr4 95988319 95988400 -106339947 + (TATG)n Simple_repeat Simple_repeat 4 84 0 748 290 67 24 chr4 95989282 95989537 -106338810 - MLT1J2 LTR MaLR -157 293 28 189 107 0 0 chr4 95989573 95989601 -106338746 + (ATG)n Simple_repeat Simple_repeat 2 29 0 656 260 52 106 chr4 95989601 95990063 -106338284 + LTR68 LTR ERV1 1 437 -303 723 262 42 42 chr4 95990242 95990479 -106337868 - MIR SINE MIR 0 262 26 186 298 53 11 chr4 95990733 95990827 -106337520 + L2 LINE L2 3214 3311 -2 41113 67 2 1 chr4 95991394 95997533 -106330814 + L1PA5 LINE L1 3 6152 -2 27 29 0 0 chr4 95997715 95997749 -106330598 + AT_rich Low_complexity Low_complexity 1 34 0 230 316 68 8 chr4 95998624 95998741 -106329606 - L3 LINE CR1 -976 601 478 25 0 0 0 chr4 95999424 95999449 -106328898 + AT_rich Low_complexity Low_complexity 1 25 0 276 143 0 20 chr4 95999569 95999618 -106328729 - Alu SINE Alu -254 48 1 394 284 52 8 chr4 95999619 95999753 -106328594 + MER117 DNA MER1_type 9 148 -49 1862 83 0 4 chr4 96000777 96001019 -106327328 + AluY SINE Alu 71 311 0 233 269 0 0 chr4 96002424 96002476 -106325871 + tRNA-Arg-AGG tRNA tRNA 18 69 -7 560 289 79 13 chr4 96002535 96002763 -106325584 + MIR SINE MIR 20 262 0 22 103 0 0 chr4 96003335 96003413 -106324934 + AT_rich Low_complexity Low_complexity 1 78 0 288 281 0 0 chr4 96003746 96003828 -106324519 - L1MC4 LINE L1 -1347 6695 6614 243 0 0 0 chr4 96003832 96003859 -106324488 + (CA)n Simple_repeat Simple_repeat 2 28 0 192 40 0 0 chr4 96004191 96004216 -106324131 + (TG)n Simple_repeat Simple_repeat 2 26 0 4699 152 34 5 chr4 96004629 96005454 -106322893 - L1MA4 LINE L1 -95 6205 5357 4098 169 7 31 chr4 96005452 96006308 -106322039 + L1MA4 LINE L1 4529 5363 -783 * 21 0 0 0 chr4 96006691 96006712 -106321635 + AT_rich Low_complexity Low_complexity 1 21 0 251 326 94 36 chr4 96006899 96007037 -106321310 - MIR3 SINE MIR -40 168 23 21 82 0 0 chr4 96007833 96007882 -106320465 + AT_rich Low_complexity Low_complexity 1 49 0 233 304 89 0 chr4 96008308 96008420 -106319927 + L1MC/D LINE L1 5141 5262 -884 326 271 100 61 chr4 96008429 96008709 -106319638 + L1MC/D LINE L1 5304 5594 -765 216 143 0 0 chr4 96008711 96008753 -106319594 + (T)n Simple_repeat Simple_repeat 1 42 0 6395 24 0 0 chr4 96008767 96009511 -106318836 - L1PA2 LINE L1 -6 6149 5406 450 108 0 0 chr4 96010054 96010128 -106318219 + (TCCCC)n Simple_repeat Simple_repeat 5 78 0 1878 185 10 47 chr4 96010293 96010698 -106317649 - MLT1B LTR MaLR 0 390 1 7263 41 4 13 chr4 96010883 96011229 -106317118 + L1PA5 LINE L1 5142 5490 -664 2789 22 0 0 chr4 96011229 96011541 -106316806 + AluYb8 SINE Alu 1 312 -6 7263 41 4 13 chr4 96011541 96012213 -106316134 + L1PA5 LINE L1 5490 6152 -2 2233 119 0 0 chr4 96012541 96012844 -106315503 - AluSx SINE Alu -9 303 1 208 143 0 0 chr4 96013164 96013199 -106315148 + (A)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr4 96013630 96013652 -106314695 + AT_rich Low_complexity Low_complexity 1 22 0 816 244 6 0 chr4 96013801 96013961 -106314386 + MER5A DNA MER1_type 1 161 -28 27 73 0 0 chr4 96015255 96015310 -106313037 + AT_rich Low_complexity Low_complexity 1 55 0 1034 159 41 10 chr4 96015741 96015936 -106312411 - MER2 DNA MER2_type -136 209 9 33 66 0 0 chr4 96017045 96017106 -106311241 + AT_rich Low_complexity Low_complexity 1 61 0 1021 295 46 62 chr4 96017477 96017546 -106310801 - L2 LINE L2 0 3313 3244 2162 141 120 5 chr4 96017546 96017928 -106310419 + MSTA LTR MaLR 1 426 -2 1021 295 46 62 chr4 96017928 96018464 -106309883 - L2 LINE L2 -69 3244 2736 1912 115 61 0 chr4 96018631 96018909 -106309438 + AluSx SINE Alu 1 295 -17 6257 130 16 21 chr4 96018943 96019982 -106308365 + L1MA3 LINE L1 5236 6269 -36 495 0 0 0 chr4 96019982 96020037 -106308310 + (TA)n Simple_repeat Simple_repeat 2 56 0 6257 130 16 21 chr4 96020037 96020074 -106308273 + L1MA3 LINE L1 6269 6305 0 219 372 176 5 chr4 96020358 96020546 -106307801 + MIR SINE MIR 39 258 -4 25 0 0 0 chr4 96022823 96022848 -106305499 + AT_rich Low_complexity Low_complexity 1 25 0 927 225 209 0 chr4 96023064 96023366 -106304981 + MLT1A1 LTR MaLR 1 365 0 202 146 24 0 chr4 96023979 96024020 -106304327 + T-rich Low_complexity Low_complexity 3 44 0 189 179 54 36 chr4 96024117 96024173 -106304174 + MIR3 SINE MIR 106 162 -46 24 32 0 0 chr4 96024913 96024944 -106303403 + AT_rich Low_complexity Low_complexity 1 31 0 316 241 38 75 chr4 96025671 96025804 -106302543 - L1MC4 LINE L1 -1344 6698 6571 747 288 37 14 chr4 96025965 96026180 -106302167 + MIR SINE MIR 1 220 -42 186 288 91 0 chr4 96027380 96027446 -106300901 + MIR SINE MIR 85 156 -106 24 85 0 0 chr4 96027479 96027538 -106300809 + AT_rich Low_complexity Low_complexity 1 59 0 267 343 36 12 chr4 96027882 96028048 -106300299 - L1MC4 LINE L1 -2067 5741 5572 21 0 0 0 chr4 96028051 96028072 -106300275 + AT_rich Low_complexity Low_complexity 1 21 0 5786 177 17 5 chr4 96028210 96029337 -106299010 - L1MC1 LINE L1 -2 6331 5187 249 268 41 16 chr4 96029364 96029487 -106298860 - L1MDa LINE L1 -3332 3208 3083 419 319 37 56 chr4 96029519 96029674 -106298673 + MIR SINE MIR 23 174 -88 525 78 0 0 chr4 96029674 96029751 -106298596 - L1PB1 LINE L1 -5 6146 6070 419 319 37 56 chr4 96029751 96029811 -106298536 + MIR SINE MIR 174 234 -28 23 33 0 0 chr4 96030007 96030037 -106298310 + AT_rich Low_complexity Low_complexity 1 30 0 234 193 111 26 chr4 96030224 96030357 -106297990 - L1MDa LINE L1 -3932 2608 2467 2346 214 66 2 chr4 96030737 96031252 -106297095 - MER67C LTR ERV1 -162 548 1 275 284 59 0 chr4 96031391 96031493 -106296854 - MIR SINE MIR -46 216 109 294 275 62 0 chr4 96031673 96031753 -106296594 + L2 LINE L2 3227 3311 -2 22 35 0 0 chr4 96031859 96031888 -106296459 + AT_rich Low_complexity Low_complexity 1 29 0 2436 65 0 0 chr4 96031962 96032269 -106296078 + AluY SINE Alu 1 307 -4 6157 89 31 20 chr4 96033847 96035501 -106292846 - L1PA10 LINE L1 -13 6155 4490 3027 206 78 4 chr4 96035556 96036323 -106292024 - L1MB7 LINE L1 -3 6181 5358 207 0 0 0 chr4 96036323 96036346 -106292001 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 713 89 0 0 chr4 96036346 96036447 -106291900 - AluY SINE Alu -28 283 183 699 258 81 24 chr4 96036451 96036784 -106291563 - L1MB7 LINE L1 -784 5362 5011 * 4328 256 56 45 chr4 96036752 96038619 -106289728 - L1MB7 LINE L1 -1769 4377 2489 274 169 15 31 chr4 96038663 96038728 -106289619 - MLT2B1 LTR ERVL -2 518 455 4792 187 39 17 chr4 96038741 96040385 -106287962 - L1PA16 LINE L1 -1 6165 4492 3144 131 46 2 chr4 96040410 96040884 -106287463 + MER1A DNA MER1_type 35 529 0 1814 193 42 34 chr4 96041011 96041571 -106286776 + MLT2A2 LTR ERVL 1 554 0 7264 244 18 6 chr4 96041571 96043524 -106284823 - L1MEc LINE L1 -1698 4684 2709 1261 262 38 51 chr4 96043527 96043997 -106284350 - MLT2B1 LTR ERVL -56 464 1 328 264 0 0 chr4 96044010 96044097 -106284250 - L1MEc LINE L1 -3992 2571 2485 6524 198 19 7 chr4 96044098 96046372 -106281975 - L1PA15 LINE L1 0 7603 5312 4903 280 48 37 chr4 96046374 96046647 -106281700 - L1PA15 LINE L1 -4855 2726 2457 360 0 0 0 chr4 96046647 96046687 -106281660 + (TG)n Simple_repeat Simple_repeat 2 41 0 4903 280 48 37 chr4 96046687 96048839 -106279508 - L1PA15 LINE L1 -5124 2457 1 773 270 51 82 chr4 96048846 96049721 -106278626 - L1MEc LINE L1 -3938 2446 1599 17248 63 5 1 chr4 96049794 96052833 -106275514 - L1PA6 LINE L1 -6 6148 3094 3479 137 38 42 chr4 96054700 96055471 -106272876 + MER4E LTR ERV1 1 766 0 1899 105 51 4 chr4 96055518 96055794 -106272553 - AluSq SINE Alu -24 289 1 252 429 72 14 chr4 96056101 96056448 -106271899 - L2 LINE L2 -395 2919 2553 1879 144 7 20 chr4 96056816 96057122 -106271225 - AluSx SINE Alu -10 302 1 21 57 0 0 chr4 96059171 96059206 -106269141 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr4 96059412 96059436 -106268911 + AT_rich Low_complexity Low_complexity 1 24 0 2250 103 3 13 chr4 96059576 96059887 -106268460 - AluSp SINE Alu -4 309 2 1265 263 33 0 chr4 96060475 96060776 -106267571 - MLT1A1 LTR MaLR 0 365 55 729 199 8 0 chr4 96060783 96060914 -106267433 - FLAM_C SINE Alu -11 132 1 1545 161 91 11 chr4 96061513 96061787 -106266560 + AluJb SINE Alu 3 298 -14 189 351 81 0 chr4 96061906 96061980 -106266367 - L2 LINE L2 0 3272 3193 220 317 0 61 chr4 96062257 96062339 -106266008 - L3 LINE CR1 -6 1571 1495 309 331 26 7 chr4 96063335 96063486 -106264861 + MIR SINE MIR 56 209 -53 243 114 23 0 chr4 96064127 96064171 -106264176 + HAL1 LINE L1 2137 2181 -326 338 318 45 40 chr4 96064532 96064708 -106263639 + HAL1 LINE L1 2300 2476 -31 887 301 80 26 chr4 96065319 96065745 -106262602 + LTR33 LTR ERVL 4 452 -69 573 322 96 0 chr4 96065979 96066218 -106262129 - MIR SINE MIR 0 262 1 21 0 0 0 chr4 96066253 96066274 -106262073 + AT_rich Low_complexity Low_complexity 1 21 0 268 82 20 20 chr4 96067564 96067613 -106260734 + (TA)n Simple_repeat Simple_repeat 1 49 0 279 300 153 45 chr4 96067782 96068069 -106260278 - L3b LINE CR1 -164 1419 1102 189 152 30 0 chr4 96068423 96068456 -106259891 + L2 LINE L2 3272 3305 -8 1241 232 24 10 chr4 96068987 96069280 -106259067 - L1MC1 LINE L1 -23 6590 6294 2787 235 41 8 chr4 96069289 96070120 -106258227 - L1MC1 LINE L1 -815 5611 4754 7115 50 6 6 chr4 96070144 96071428 -106256919 - L1PA5 LINE L1 -15 6139 4856 20732 92 7 11 chr4 96071428 96074364 -106253983 - L1P LINE L1 -3220 2926 1 8288 231 89 48 chr4 96074409 96076676 -106251671 - L1MC1 LINE L1 -1713 4713 2540 2138 112 0 22 chr4 96076676 96076990 -106251357 - AluSx SINE Alu -5 307 1 8288 231 89 48 chr4 96076990 96078456 -106249891 - L1MC1 LINE L1 -3886 2540 764 1875 144 7 0 chr4 96078456 96078747 -106249600 + AluJb SINE Alu 1 293 -19 8288 231 89 48 chr4 96078747 96079487 -106248860 - L1MC1 LINE L1 -5662 764 56 408 20 0 0 chr4 96080554 96080603 -106247744 + (CA)n Simple_repeat Simple_repeat 2 50 0 22 56 0 0 chr4 96080969 96081005 -106247342 + AT_rich Low_complexity Low_complexity 1 36 0 352 331 126 19 chr4 96081205 96081474 -106246873 - L2 LINE L2 -5 3308 3011 6052 211 42 41 chr4 96081596 96083306 -106245041 - L1 LINE L1 -1812 4334 2624 3268 201 36 14 chr4 96083303 96084070 -106244277 + L1 LINE L1 4340 5123 -1023 * 183 250 250 11 chr4 96084742 96084834 -106243513 - MIR SINE MIR -52 210 97 875 45 18 0 chr4 96085335 96085447 -106242900 + L1PA4 LINE L1 6040 6153 -2 378 369 85 41 chr4 96086297 96086660 -106241687 - L2 LINE L2 -4 3268 2890 246 256 160 67 chr4 96086741 96087159 -106241188 - Charlie7 DNA MER1_type -1 2611 2155 648 252 69 57 chr4 96087332 96087427 -106240920 - Charlie7 DNA MER1_type -1886 726 634 2681 85 6 0 chr4 96087427 96087780 -106240567 - THE1A LTR MaLR 0 355 1 648 252 69 57 chr4 96087780 96087930 -106240417 - Charlie7 DNA MER1_type -1978 634 478 246 264 123 19 chr4 96087910 96088016 -106240331 + Charlie7 DNA MER1_type 252 368 -2244 * 32 43 0 0 chr4 96088134 96088180 -106240167 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr4 96088586 96088608 -106239739 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 96088656 96088684 -106239663 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 96089425 96089454 -106238893 + AT_rich Low_complexity Low_complexity 1 29 0 210 274 43 111 chr4 96089457 96089574 -106238773 + L2 LINE L2 3200 3308 -5 667 351 118 17 chr4 96089959 96090606 -106237741 + L2 LINE L2 2584 3298 -15 4177 182 24 30 chr4 96091901 96092775 -106235572 + L1 LINE L1 3450 4318 -1828 17667 173 29 29 chr4 96092785 96093928 -106234419 - L1PA14 LINE L1 -2 7597 6456 486 0 0 0 chr4 96093928 96093982 -106234365 + (TG)n Simple_repeat Simple_repeat 1 54 0 17667 173 29 29 chr4 96093982 96098327 -106230020 - L1PA14 LINE L1 -1143 6456 2114 1773 155 61 22 chr4 96098327 96098688 -106229659 - THE1C LTR MaLR 0 375 1 9703 117 37 42 chr4 96098688 96100275 -106228072 - THE1C-int LTR MaLR 0 1580 1 1830 136 69 36 chr4 96100277 96100638 -106227709 - THE1C LTR MaLR -2 373 1 17667 173 29 29 chr4 96100638 96101581 -106226766 - L1PA14 LINE L1 -5485 2114 1173 850 148 0 47 chr4 96101581 96101730 -106226617 + FLAM_C SINE Alu 1 142 -1 17667 173 29 29 chr4 96101730 96102740 -106225607 - L1PA14 LINE L1 -6426 1173 1 4185 195 23 34 chr4 96102752 96103112 -106225235 + L1 LINE L1 4330 4692 -1454 4112 127 23 19 chr4 96103112 96103802 -106224545 + L1PA16 LINE L1 5463 6157 -9 4185 195 23 34 chr4 96103802 96104479 -106223868 + L1 LINE L1 4692 5356 -790 522 211 102 0 chr4 96104467 96104614 -106223733 + L1MA9 LINE L1 4559 4720 -1426 * 4515 168 38 27 chr4 96104611 96105040 -106223307 + L1MA9 LINE L1 5350 5773 -539 229 68 45 0 chr4 96105040 96105084 -106223263 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 4515 168 38 27 chr4 96105084 96105441 -106222906 + L1MA9 LINE L1 5773 6150 -162 1418 153 159 37 chr4 96105441 96105762 -106222585 - MER46B DNA MER2_type 0 236 2 4515 168 38 27 chr4 96105762 96105926 -106222421 + L1MA9 LINE L1 6150 6311 -1 938 233 18 22 chr4 96106908 96107131 -106221216 + LTR40a LTR ERVL 246 467 -52 226 286 0 0 chr4 96107163 96107219 -106221128 + LTR40b LTR ERVL 407 462 0 206 338 83 21 chr4 96107310 96107455 -106220892 + MER5A DNA MER1_type 35 188 -1 21 0 0 0 chr4 96107498 96107519 -106220828 + AT_rich Low_complexity Low_complexity 1 21 0 254 73 24 0 chr4 96108006 96108047 -106220300 + (TTA)n Simple_repeat Simple_repeat 1 42 0 676 226 60 0 chr4 96108128 96108296 -106220051 - L1PA16 LINE L1 -2 6164 5987 277 274 0 0 chr4 96109232 96109294 -106219053 - MIR SINE MIR -21 241 180 471 324 7 7 chr4 96109784 96109929 -106218418 - MIR SINE MIR -115 147 3 656 228 190 0 chr4 96110639 96110823 -106217524 - MER20 DNA MER1_type 0 219 1 212 125 21 0 chr4 96111527 96111535 -106216812 + (TCTA)n Simple_repeat Simple_repeat 3 9 -42 543 64 26 0 chr4 96111535 96111613 -106216734 + MADE1 DNA Mariner 1 80 0 212 125 21 0 chr4 96111613 96111652 -106216695 + (TCTA)n Simple_repeat Simple_repeat 9 51 0 27 29 0 0 chr4 96112941 96112975 -106215372 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr4 96113584 96113614 -106214733 + AT_rich Low_complexity Low_complexity 1 30 0 766 323 159 46 chr4 96114259 96115626 -106212721 - L2 LINE L2 -1 3312 1769 298 317 67 0 chr4 96116712 96116816 -106211531 + MIR3 SINE MIR 66 176 -32 32 26 0 0 chr4 96116827 96116866 -106211481 + AT_rich Low_complexity Low_complexity 1 39 0 180 158 0 0 chr4 96118794 96118832 -106209515 + (CA)n Simple_repeat Simple_repeat 1 38 0 180 261 22 0 chr4 96119673 96119719 -106208628 + MIR SINE MIR 191 237 -25 837 134 17 81 chr4 96119898 96120070 -106208277 + MER20 DNA MER1_type 1 161 -58 22 70 0 0 chr4 96120127 96120170 -106208177 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr4 96120298 96120327 -106208020 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr4 96120508 96120543 -106207804 + AT_rich Low_complexity Low_complexity 1 35 0 465 250 18 0 chr4 96120905 96121017 -106207330 - L2 LINE L2 -13 3300 3187 1465 129 96 13 chr4 96121022 96121314 -106207033 - THE1C LTR MaLR 0 375 1 562 290 130 7 chr4 96122041 96122341 -106206006 + HsTC2c DNA Tc2 17 353 -376 1079 61 0 0 chr4 96122382 96122513 -106205834 - AluSc SINE Alu -178 131 1 605 287 151 44 chr4 96122514 96122831 -106205516 + HsTC2c DNA Tc2 379 729 0 239 133 0 0 chr4 96123194 96123239 -106205108 - LTR66 LTR ERVL -171 439 395 307 173 0 0 chr4 96123248 96123300 -106205047 - L1MC4 LINE L1 -1339 6703 6652 * 310 307 23 0 chr4 96123260 96123348 -106204999 + L1MC4 LINE L1 6614 6703 -1339 * 355 289 0 0 chr4 96123302 96123392 -106204955 - L1MC4 LINE L1 -1339 6703 6614 271 324 124 9 chr4 96123649 96123754 -106204593 - MIR3 SINE MIR -80 128 12 260 299 37 28 chr4 96123849 96123956 -106204391 + LTR16A LTR ERVL 27 134 -316 354 248 119 17 chr4 96124097 96124271 -106204076 + LTR16A LTR ERVL 266 450 0 341 301 44 64 chr4 96124453 96124656 -106203691 - MIR SINE MIR -28 234 36 207 0 0 0 chr4 96124845 96124868 -106203479 + (A)n Simple_repeat Simple_repeat 1 23 0 1637 183 35 3 chr4 96125559 96125903 -106202444 - L1 LINE L1 -1666 5542 5188 2193 194 35 12 chr4 96125913 96126556 -106201791 - L1 LINE L1 -4434 2775 2008 843 206 23 73 chr4 96126740 96126959 -106201388 - MER58A DNA MER1_type -6 218 11 25 31 0 0 chr4 96127004 96127036 -106201311 + AT_rich Low_complexity Low_complexity 1 32 0 659 293 40 3 chr4 96127185 96127482 -106200865 - L1M4 LINE L1 -1572 4574 4267 238 156 31 0 chr4 96127487 96127551 -106200796 + (TA)n Simple_repeat Simple_repeat 1 66 0 648 125 0 0 chr4 96127561 96127657 -106200690 - L1M2 LINE L1 -511 5789 5694 2204 261 92 57 chr4 96127763 96128938 -106199409 - L1 LINE L1 -5222 1987 95 3732 205 33 20 chr4 96129038 96129532 -106198815 - L1 LINE L1 -889 5257 4744 2107 206 30 68 chr4 96129532 96130104 -106198243 + MLT2B3 LTR ERVL 1 550 -4 3732 205 33 20 chr4 96130104 96130549 -106197798 - L1 LINE L1 -1402 4744 4306 978 232 0 0 chr4 96130549 96130760 -106197587 - L1PB4 LINE L1 0 6156 5946 3456 53 0 9 chr4 96130762 96131214 -106197133 - LTR7 LTR ERV1 -2 448 1 278 287 48 66 chr4 96131521 96131688 -106196659 - MIR SINE MIR -28 234 71 207 0 0 0 chr4 96131914 96131937 -106196410 + (A)n Simple_repeat Simple_repeat 1 23 0 333 271 135 0 chr4 96133161 96133294 -106195053 + MIR SINE MIR 111 261 -1 273 218 0 18 chr4 96133301 96133356 -106194991 - L2 LINE L2 -5 3308 3255 233 316 175 5 chr4 96133346 96133552 -106194795 - L2 LINE L2 -726 2588 2348 * 26 30 0 0 chr4 96135437 96135470 -106192877 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr4 96136306 96136327 -106192020 + AT_rich Low_complexity Low_complexity 1 21 0 2299 76 6 3 chr4 96136935 96137251 -106191096 + HERVH LTR ERV1 223 539 -7174 16524 96 19 43 chr4 96137251 96140131 -106188216 + HERVH LTR ERV1 246 2995 -4718 887 141 13 0 chr4 96140110 96140259 -106188088 + HERVH LTR ERV1 3140 3290 -4423 * 3344 108 8 0 chr4 96140258 96140748 -106187599 + HERVH LTR ERV1 3500 3993 -3720 4287 142 5 1 chr4 96140750 96141410 -106186937 + HERVH LTR ERV1 4488 5149 -2564 984 100 0 7 chr4 96141411 96141561 -106186786 + HERVH LTR ERV1 5600 5748 -1965 460 121 165 0 chr4 96141562 96141653 -106186694 + HERVH LTR ERV1 7384 7489 -224 3164 169 12 10 chr4 96141753 96142370 -106185977 + L1PB4 LINE L1 5334 5950 -206 3491 53 0 7 chr4 96142370 96142821 -106185526 + LTR7 LTR ERV1 1 448 -2 16324 94 44 67 chr4 96142823 96146131 -106182216 + HERVH LTR ERV1 1 3290 -4423 3325 110 0 4 chr4 96146136 96146627 -106181720 + HERVH LTR ERV1 3506 3994 -3719 4267 147 1 1 chr4 96146628 96147290 -106181057 + HERVH LTR ERV1 4488 5149 -2564 1201 56 11 28 chr4 96147425 96147604 -106180743 + HERVH LTR ERV1 7538 7713 0 3328 69 0 9 chr4 96147604 96148056 -106180291 + LTR7 LTR ERV1 1 448 -2 3877 217 40 2 chr4 96148283 96149237 -106179110 + L1M2 LINE L1 1910 2899 -3950 7021 214 26 15 chr4 96149285 96149863 -106178484 + L1M2 LINE L1 3162 3732 -3116 1191 226 13 59 chr4 96149863 96150169 -106178178 + AluJb SINE Alu 1 292 -10 7021 214 26 15 chr4 96150169 96151318 -106177029 + L1M2 LINE L1 3732 4908 -1940 1784 196 43 19 chr4 96151327 96151750 -106176597 + L1M2 LINE L1 5167 5599 -1249 776 316 84 67 chr4 96152673 96153223 -106175124 - L2 LINE L2 -749 2565 2007 387 236 7 64 chr4 96154220 96154360 -106173987 + MER94 DNA DNA 2 133 -1 223 361 69 51 chr4 96154435 96154770 -106173577 - L2 LINE L2 -1732 1582 1242 778 284 27 27 chr4 96154810 96155071 -106173276 - MIR SINE MIR 0 262 2 2323 194 41 27 chr4 96156318 96157199 -106171148 + L1MC3 LINE L1 5487 6341 -3 21 71 0 0 chr4 96157789 96157831 -106170516 + AT_rich Low_complexity Low_complexity 1 42 0 1953 146 0 10 chr4 96158347 96158648 -106169699 + AluSq SINE Alu 1 298 -15 340 287 113 9 chr4 96159446 96159561 -106168786 + MIR SINE MIR 27 153 -109 31 0 0 0 chr4 96159704 96159735 -106168612 + AT_rich Low_complexity Low_complexity 1 31 0 631 211 28 50 chr4 96161287 96161467 -106166880 - MER20 DNA MER1_type -43 176 1 525 103 13 0 chr4 96162207 96162285 -106166062 + MADE1 DNA Mariner 1 79 -1 1044 208 68 84 chr4 96162393 96162773 -106165574 - MLT1A2 LTR MaLR 0 374 1 2217 187 83 0 chr4 96162840 96163333 -106165014 + L1MB7 LINE L1 5636 6169 -15 193 340 56 49 chr4 96163863 96164007 -106164340 + L2 LINE L2 2748 2892 -422 233 253 101 0 chr4 96164412 96164491 -106163856 + MIR SINE MIR 120 206 -56 211 257 86 76 chr4 96165259 96165364 -106162983 - L2 LINE L2 -1003 2311 2206 257 226 0 0 chr4 96165864 96165917 -106162430 + (TCCA)n Simple_repeat Simple_repeat 2 54 0 2297 304 54 51 chr4 96165917 96167362 -106160985 - L2 LINE L2 0 3313 1875 2588 153 17 11 chr4 96167760 96168229 -106160118 - L1MA5A LINE L1 -10 6287 5816 198 0 0 0 chr4 96168511 96168533 -106159814 + (TTTAG)n Simple_repeat Simple_repeat 3 24 0 28 0 0 0 chr4 96169308 96169336 -106159011 + AT_rich Low_complexity Low_complexity 1 28 0 261 311 56 22 chr4 96169498 96169588 -106158759 + MLT1J LTR MaLR 103 195 -316 21 36 0 0 chr4 96171194 96171222 -106157125 + AT_rich Low_complexity Low_complexity 1 28 0 1339 202 116 18 chr4 96172524 96172861 -106155486 - MLT1A2 LTR MaLR -4 370 1 215 219 207 12 chr4 96172904 96172986 -106155361 - MIR SINE MIR -85 177 80 23 33 0 0 chr4 96173633 96173663 -106154684 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr4 96174866 96174890 -106153457 + AT_rich Low_complexity Low_complexity 1 24 0 1171 186 0 0 chr4 96176053 96176268 -106152079 + AluJb SINE Alu 88 302 -10 352 241 128 28 chr4 96177112 96177253 -106151094 + MIR SINE MIR 34 188 -74 180 365 0 24 chr4 96178342 96178427 -106149920 - L2 LINE L2 0 3272 3190 183 156 0 0 chr4 96178451 96178483 -106149864 + (TA)n Simple_repeat Simple_repeat 1 32 0 441 266 83 52 chr4 96178542 96178734 -106149613 - MIR SINE MIR 0 262 65 281 358 25 30 chr4 96178911 96179112 -106149235 + MIR SINE MIR 7 206 -56 219 139 0 0 chr4 96179620 96179656 -106148691 + (TC)n Simple_repeat Simple_repeat 1 36 0 2199 103 0 23 chr4 96179656 96179958 -106148389 - AluSg SINE Alu -15 295 1 229 265 115 32 chr4 96179958 96180211 -106148136 + L1 LINE L1 3695 3968 -2178 3385 222 67 168 chr4 96180257 96181690 -106146657 + L1MCa LINE L1 3 1196 -4849 1685 221 75 85 chr4 96182716 96183833 -106144514 + L1 LINE L1 1545 2701 -4467 992 146 8 13 chr4 96183837 96184012 -106144335 + MSTB1 LTR MaLR 257 432 0 274 188 0 0 chr4 96184012 96184060 -106144287 + L1 LINE L1 5438 5485 -1682 283 164 16 0 chr4 96184103 96184164 -106144183 - L1 LINE L1 -2819 3327 3266 322 258 0 41 chr4 96184185 96184282 -106144065 - MSTC LTR MaLR -333 95 3 337 119 0 34 chr4 96184284 96184343 -106144004 + L1MA8 LINE L1 5924 5980 -311 282 186 68 0 chr4 96184345 96184404 -106143943 + L1MCa LINE L1 1472 1534 -5030 1351 230 14 30 chr4 96184505 96184870 -106143477 - Charlie6 DNA MER1_type -2173 1327 969 8770 176 40 28 chr4 96184875 96187690 -106140657 + L1MA4 LINE L1 3455 6297 -3 1843 333 39 63 chr4 96187690 96187960 -106140387 - Charlie6 DNA MER1_type -2533 967 692 568 179 16 0 chr4 96187960 96188083 -106140264 - L1MB7 LINE L1 0 6184 6060 1843 333 39 63 chr4 96188083 96188793 -106139554 - Charlie6 DNA MER1_type -2808 692 11 216 294 24 87 chr4 96189232 96189358 -106138989 - L2 LINE L2 -14 3299 3182 471 308 118 43 chr4 96189652 96189974 -106138373 - MLT1J2 LTR MaLR -9 437 92 1611 175 164 44 chr4 96189978 96190435 -106137912 + MLT2B2 LTR ERVL 4 515 0 2153 129 3 0 chr4 96190825 96191128 -106137219 - AluSq SINE Alu -8 305 2 1823 264 73 19 chr4 96191844 96192474 -106135873 + L1M2 LINE L1 1224 1887 -4962 3361 62 2 7 chr4 96192475 96192925 -106135422 + LTR7 LTR ERV1 1 448 -2 1214 74 6 0 chr4 96192927 96193090 -106135257 + HERVH LTR ERV1 1 164 -7549 733 183 167 57 chr4 96243091 96243337 -106085010 + MLT1A1 LTR MaLR 87 359 -6 1653 193 56 24 chr4 96243515 96243893 -106084454 - MLT1B LTR MaLR 0 390 1 243 292 10 10 chr4 96244138 96244234 -106084113 - LTR33A LTR ERVL -6 517 422 254 231 110 66 chr4 96244534 96244625 -106083722 - LTR33A LTR ERVL -363 160 66 24 32 0 0 chr4 96244940 96244971 -106083376 + AT_rich Low_complexity Low_complexity 1 31 0 345 329 14 68 chr4 96247530 96247752 -106080595 + L1MEd LINE L1 1040 1249 -4870 2008 180 70 16 chr4 96248039 96248466 -106079881 + MLT1C LTR MaLR 1 450 -17 2504 144 31 7 chr4 96248816 96249233 -106079114 - MSTA LTR MaLR -1 427 1 191 59 0 29 chr4 96249540 96249574 -106078773 + (TA)n Simple_repeat Simple_repeat 2 34 0 1858 156 64 12 chr4 96251594 96251940 -106076407 + THE1B LTR MaLR 1 364 0 3236 175 137 133 chr4 96251942 96252227 -106076120 + THE1B-int LTR MaLR 3 285 -1366 585 39 0 0 chr4 96252227 96252304 -106076043 - L1PA5 LINE L1 0 6154 6078 3236 175 137 133 chr4 96252304 96253095 -106075252 + THE1B-int LTR MaLR 285 1083 -568 849 135 30 0 chr4 96253095 96253228 -106075119 + THE1B LTR MaLR 228 364 0 186 267 0 0 chr4 96253500 96253590 -106074757 + (TA)n Simple_repeat Simple_repeat 2 91 0 322 243 14 0 chr4 96253624 96253764 -106074583 + (TA)n Simple_repeat Simple_repeat 2 143 0 2728 184 21 58 chr4 96253809 96253872 -106074475 - MER6A DNA MER2_type -260 605 541 1353 209 3 66 chr4 96253872 96254192 -106074155 + AluJo SINE Alu 1 300 -2 2728 184 21 58 chr4 96254192 96254754 -106073593 - MER6A DNA MER2_type -324 541 3 1155 232 58 32 chr4 96254762 96255142 -106073205 - L1MA10 LINE L1 -13 6321 5932 1753 193 78 5 chr4 96255144 96255544 -106072803 - L1MA10 LINE L1 -582 5730 5302 1685 232 26 5 chr4 96255535 96255962 -106072385 - L1MA10 LINE L1 -1799 4347 3912 * 2055 169 16 32 chr4 96255966 96256338 -106072009 - MER83C LTR ERV1 -7 366 1 2040 181 0 6 chr4 96256346 96256683 -106071664 - MER83C-int LTR ERV1 -19 4861 4527 554 323 38 25 chr4 96256670 96257270 -106071077 - MER83C-int LTR ERV1 -255 8371 6257 * 2714 318 27 40 chr4 96258068 96258657 -106069690 - MER83C-int LTR ERV1 -1051 3903 3307 2188 141 9 3 chr4 96258657 96259005 -106069342 - THE1A LTR MaLR -2 353 4 10812 114 15 5 chr4 96259008 96260024 -106068323 - THE1A-int LTR MaLR 0 1580 541 2307 106 3 0 chr4 96260024 96260327 -106068020 - AluY SINE Alu -7 304 1 10812 114 15 5 chr4 96260327 96260873 -106067474 - THE1A-int LTR MaLR -1039 541 2 2164 140 8 11 chr4 96260874 96261230 -106067117 - THE1A LTR MaLR 0 355 1 2714 318 27 40 chr4 96261230 96262242 -106066105 - MER83C-int LTR ERV1 -1648 3306 2318 308 304 0 0 chr4 96262384 96262476 -106065871 - MER83C-int LTR ERV1 -2775 2179 2088 654 303 45 61 chr4 96262704 96263545 -106064802 - MER83C-int LTR ERV1 -3505 1449 1067 3347 238 50 22 chr4 96263707 96264655 -106063692 - MER83C-int LTR ERV1 -3872 1008 209 461 281 46 26 chr4 96264930 96265083 -106063264 - MER83C-int LTR ERV1 -4681 199 44 1933 157 32 40 chr4 96265096 96265472 -106062875 - MER83C LTR ERV1 0 373 1 1851 235 23 6 chr4 96265473 96265950 -106062397 - L1MA10 LINE L1 -2228 3918 3434 233 341 35 0 chr4 96266059 96266144 -106062203 + MIR3 SINE MIR 114 201 -7 24 67 0 0 chr4 96267287 96267332 -106061015 + AT_rich Low_complexity Low_complexity 1 45 0 974 298 88 13 chr4 96268129 96268515 -106059832 + L1ME1 LINE L1 37 451 -5945 864 295 125 23 chr4 96268536 96269281 -106059066 + L1ME1 LINE L1 3114 3934 -2281 1635 331 55 50 chr4 96269306 96270006 -106058341 + L1ME1 LINE L1 4202 4910 -1305 798 89 0 0 chr4 96270006 96270118 -106058229 + (TA)n Simple_repeat Simple_repeat 2 113 0 1635 331 55 50 chr4 96270118 96270508 -106057839 + L1ME1 LINE L1 4910 5297 -918 2073 249 89 29 chr4 96270576 96271292 -106057055 + L1ME1 LINE L1 5394 6163 -72 188 35 35 0 chr4 96271292 96271321 -106057026 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 2073 249 89 29 chr4 96271321 96271394 -106056953 + L1ME1 LINE L1 6163 6230 -5 237 316 51 75 chr4 96271960 96272213 -106056134 - L2 LINE L2 -261 3052 2806 313 321 9 9 chr4 96272916 96273028 -106055319 - MER81 DNA DNA -2 112 1 227 324 14 0 chr4 96273512 96273586 -106054761 - MIR SINE MIR -3 259 185 42392 36 21 2 chr4 96273596 96279619 -106048728 - L1PA2 LINE L1 -2 6153 13 270 228 41 152 chr4 96279656 96279827 -106048520 - MIR SINE MIR -99 163 12 272 264 33 33 chr4 96279840 96279961 -106048386 - L1ME LINE L1 -363 5801 5681 323 307 63 17 chr4 96280013 96280251 -106048096 - L1ME LINE L1 -665 5577 5329 1109 38 0 0 chr4 96280303 96280434 -106047913 - AluY SINE Alu -12 299 169 2398 73 3 0 chr4 96282257 96282572 -106045775 - L1PA7 LINE L1 0 6154 5839 4283 73 3 0 chr4 96282572 96283161 -106045186 - L1PA7 LINE L1 -985 5161 4571 24 85 0 0 chr4 96283326 96283385 -106044962 + AT_rich Low_complexity Low_complexity 1 59 0 1425 173 62 0 chr4 96284234 96284494 -106043853 + AluJb SINE Alu 5 280 -32 362 346 142 47 chr4 96284815 96285417 -106042930 - L2 LINE L2 -93 3179 2507 504 333 116 28 chr4 96285447 96285801 -106042546 - L2 LINE L2 -954 2360 1976 4173 87 128 2 chr4 96286075 96286686 -106041661 + LTR12 LTR ERV1 1 688 0 181 298 184 19 chr4 96286812 96286970 -106041377 + L2 LINE L2 3128 3311 -2 212 312 159 29 chr4 96287021 96287191 -106041156 + L3 LINE CR1 1313 1504 -73 233 98 24 0 chr4 96287497 96287538 -106040809 + (TC)n Simple_repeat Simple_repeat 2 43 0 248 253 25 25 chr4 96288812 96288891 -106039456 + MIR SINE MIR 169 247 -15 27 62 0 0 chr4 96288903 96288951 -106039396 + AT_rich Low_complexity Low_complexity 1 48 0 13910 151 24 6 chr4 96289381 96291728 -106036619 + Tigger1 DNA MER2_type 30 2418 0 535 308 66 50 chr4 96291729 96292343 -106036004 - L2 LINE L2 0 3313 2638 30 27 0 0 chr4 96293357 96293394 -106034953 + AT_rich Low_complexity Low_complexity 1 37 0 1209 145 28 9 chr4 96293449 96293663 -106034684 - L1PA16 LINE L1 0 6166 5949 2003 169 6 6 chr4 96293695 96294051 -106034296 - L1MA5 LINE L1 -450 5850 5495 22 70 0 0 chr4 96295006 96295049 -106033298 + AT_rich Low_complexity Low_complexity 1 43 0 4603 216 35 12 chr4 96295098 96296195 -106032152 - L1MA5 LINE L1 -1132 5014 3893 4227 156 56 63 chr4 96296206 96297277 -106031070 + L1PA16 LINE L1 5061 6122 -44 2695 101 3 3 chr4 96297277 96297652 -106030695 - THE1C LTR MaLR 0 375 1 4227 156 56 63 chr4 96297652 96297697 -106030650 + L1PA16 LINE L1 6122 6166 0 305 61 0 20 chr4 96298145 96298165 -106030182 + (TAA)n Simple_repeat Simple_repeat 2 21 -28 1951 139 0 11 chr4 96298165 96298452 -106029895 + AluSg SINE Alu 1 284 -26 305 61 0 20 chr4 96298452 96298480 -106029867 + (TAA)n Simple_repeat Simple_repeat 21 49 0 369 0 0 0 chr4 96298480 96298521 -106029826 + (GAA)n Simple_repeat Simple_repeat 2 42 0 726 137 24 113 chr4 96299007 96299219 -106029128 + L1MA7 LINE L1 6094 6286 -5 370 270 148 51 chr4 96299878 96300373 -106027974 - L1ME3A LINE L1 -341 5829 5304 458 340 60 53 chr4 96300384 96300702 -106027645 - L1MEd LINE L1 -5548 571 252 241 228 0 35 chr4 96300825 96300882 -106027465 + A-rich Low_complexity Low_complexity 1 55 0 1590 191 3 29 chr4 96301510 96301819 -106026528 - AluJo SINE Alu -9 303 3 226 400 15 10 chr4 96301946 96302141 -106026206 - Charlie8 DNA MER1_type -2221 196 1 214 280 13 0 chr4 96302955 96303030 -106025317 + (TA)n Simple_repeat Simple_repeat 2 77 0 621 314 83 31 chr4 96303073 96303433 -106024914 + L2 LINE L2 2587 2965 -349 825 217 75 8 chr4 96303541 96303781 -106024566 - L1ME3A LINE L1 0 6170 5915 4247 181 18 33 chr4 96303809 96304834 -106023513 - L1MB1 LINE L1 -2 6402 5392 207 0 0 0 chr4 96304834 96304857 -106023490 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4247 181 18 33 chr4 96304857 96305002 -106023345 - L1M1 LINE L1 -1012 5392 5246 1915 121 21 6 chr4 96305012 96305435 -106022912 + L1M1 LINE L1 5368 5794 -743 * 7886 215 56 12 chr4 96305432 96307478 -106020869 - L1MB1 LINE L1 -1118 5264 3130 242 95 0 0 chr4 96307491 96307533 -106020814 - L1MA2 LINE L1 0 6304 6263 2038 97 125 12 chr4 96307533 96307852 -106020495 - THE1A LTR MaLR 0 355 1 9845 116 67 1 chr4 96307862 96309333 -106019014 - THE1A-int LTR MaLR -11 1569 1 2304 100 3 21 chr4 96309393 96309733 -106018614 - THE1A LTR MaLR -20 335 2 1676 157 31 16 chr4 96309734 96310052 -106018295 - L1MA1 LINE L1 -37 6265 5943 3301 159 19 5 chr4 96310062 96310634 -106017713 + LTR22 LTR ERVK 1 580 0 847 225 0 0 chr4 96310698 96310885 -106017462 - L1MB1 LINE L1 -3246 3136 2950 1759 194 60 33 chr4 96310885 96311426 -106016921 - MLT2A2 LTR ERVL 0 554 1 2547 270 55 33 chr4 96311431 96311491 -106016856 - L1MB1 LINE L1 -3457 2925 2868 405 0 0 0 chr4 96311491 96311536 -106016811 + (TATAG)n Simple_repeat Simple_repeat 3 47 0 2547 270 55 33 chr4 96311536 96313538 -106014809 - L1MB1 LINE L1 -3514 2868 810 243 257 19 76 chr4 96313673 96313778 -106014569 - L1M3de LINE L1 -5193 2293 2195 500 346 31 50 chr4 96313954 96314372 -106013975 - L1M3de LINE L1 -5213 2273 1600 1197 266 54 63 chr4 96314377 96315023 -106013324 - L1ME3 LINE L1 -268 5894 5255 1998 141 0 0 chr4 96315249 96315540 -106012807 + AluSx SINE Alu 1 291 -21 28 48 0 0 chr4 96315548 96315590 -106012757 + AT_rich Low_complexity Low_complexity 1 42 0 32 43 0 0 chr4 96316081 96316127 -106012220 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr4 96317026 96317049 -106011298 + AT_rich Low_complexity Low_complexity 1 23 0 562 363 16 8 chr4 96317428 96317676 -106010671 - MIR SINE MIR -6 256 7 250 137 41 27 chr4 96317826 96317899 -106010448 + (TA)n Simple_repeat Simple_repeat 2 75 0 4080 221 19 24 chr4 96318134 96319042 -106009305 - L1M3de LINE L1 -6656 909 7 601 272 88 37 chr4 96319277 96319707 -106008640 + L1ME1 LINE L1 3919 4370 -1776 1418 192 24 38 chr4 96319772 96320064 -106008283 - AluJb SINE Alu -24 288 1 6804 160 15 8 chr4 96320065 96320657 -106007690 - L1PA15-16 LINE L1 -3857 2992 2405 1723 176 72 16 chr4 96320657 96320976 -106007371 - MER1B DNA MER1_type 0 337 1 6804 160 15 8 chr4 96320976 96321637 -106006710 - L1PA15-16 LINE L1 -4444 2405 1731 1039 286 24 9 chr4 96321643 96321982 -106006365 - L1PA15-16 LINE L1 -5254 1595 1252 267 318 80 77 chr4 96322355 96322629 -106005718 - L1M2 LINE L1 -5782 1067 793 245 296 14 0 chr4 96322699 96322770 -106005577 - L1M2 LINE L1 -6023 826 755 1348 146 26 0 chr4 96322802 96323028 -106005319 + L1PA16 LINE L1 5934 6165 -1 1246 236 208 16 chr4 96323081 96323724 -106004623 + L1ME1 LINE L1 4442 5208 -938 2018 239 110 44 chr4 96323740 96324541 -106003806 + L1ME1 LINE L1 5304 6157 -9 22 56 0 0 chr4 96324609 96324645 -106003702 + AT_rich Low_complexity Low_complexity 1 36 0 198 215 0 138 chr4 96324956 96325021 -106003326 + L2 LINE L2 3254 3309 -4 217 345 9 9 chr4 96325254 96325367 -106002980 - L3b LINE CR1 -151 1432 1320 225 226 19 0 chr4 96326068 96326121 -106002226 + MER69 DNA AcHobo 2334 2387 -139 607 272 0 25 chr4 96326136 96326294 -106002053 + MER110 LTR ERV1 193 346 -145 3871 183 57 30 chr4 96326304 96327248 -106001099 + L1MC2 LINE L1 5366 6335 -9 479 141 121 0 chr4 96327249 96327348 -106000999 - MER97a DNA MER1_type? -306 588 478 363 164 0 14 chr4 96327422 96327495 -106000852 - MER97b DNA MER1_type? -737 316 245 33 80 0 0 chr4 96327515 96327590 -106000757 + AT_rich Low_complexity Low_complexity 1 75 0 434 188 68 74 chr4 96327612 96327788 -106000559 - MER97b DNA MER1_type? -799 254 80 5053 166 10 31 chr4 96328679 96329642 -105998705 + L1PA13 LINE L1 4326 5265 -898 2167 119 0 0 chr4 96329642 96329928 -105998419 - AluSx SINE Alu -24 288 3 5053 166 10 31 chr4 96329928 96330093 -105998254 + L1PA13 LINE L1 5265 5432 -731 1325 128 84 8 chr4 96330093 96330337 -105998010 + L1PA13 LINE L1 5896 6163 0 208 366 30 20 chr4 96330669 96330770 -105997577 - MER5A DNA MER1_type -44 145 44 256 294 0 0 chr4 96331258 96331326 -105997021 + (TA)n Simple_repeat Simple_repeat 2 69 0 273 57 0 0 chr4 96331400 96331435 -105996912 + (TTA)n Simple_repeat Simple_repeat 3 37 0 834 357 53 28 chr4 96334022 96334853 -105993494 + HERV16 LTR ERVL 870 1798 -3433 1232 311 67 28 chr4 96334904 96335514 -105992833 + HERV16 LTR ERVL 1953 2586 -3178 523 370 102 22 chr4 96336408 96336859 -105991488 + LTR16C LTR ERVL 3 489 -2 387 315 47 23 chr4 96337201 96337734 -105990613 - L1ME LINE L1 -456 5714 5166 27 0 0 0 chr4 96337758 96337785 -105990562 + AT_rich Low_complexity Low_complexity 1 27 0 186 43 0 0 chr4 96338128 96338151 -105990196 + (TTA)n Simple_repeat Simple_repeat 1 23 0 339 246 16 24 chr4 96338297 96338423 -105989924 + L1M4 LINE L1 2873 2997 -3149 491 259 46 27 chr4 96338826 96339085 -105989262 - L1ME LINE L1 -2210 3936 3673 1124 267 3 28 chr4 96339339 96339665 -105988682 + L1PA13 LINE L1 1331 1648 -5139 4816 177 32 12 chr4 96339671 96341080 -105987267 + L1PA16 LINE L1 4729 6166 0 477 321 60 0 chr4 96341465 96341649 -105986698 + MIR SINE MIR 64 258 -4 24 0 0 0 chr4 96342833 96342857 -105985490 + AT_rich Low_complexity Low_complexity 1 24 0 1706 147 0 19 chr4 96344338 96344604 -105983743 - AluSx SINE Alu -22 290 30 1855 109 36 4 chr4 96344978 96345276 -105983071 + AluY SINE Alu 1 307 0 21 0 0 0 chr4 96345387 96345408 -105982939 + AT_rich Low_complexity Low_complexity 1 21 0 302 207 24 0 chr4 96345831 96345913 -105982434 + (TATATG)n Simple_repeat Simple_repeat 6 89 0 37925 47 6 0 chr4 96345926 96352037 -105976310 - L1PA4 LINE L1 -11 6144 1 1938 172 0 3 chr4 96352365 96352667 -105975680 - AluSx SINE Alu -11 301 1 765 343 54 20 chr4 96353119 96353527 -105974820 + LTR16B LTR ERVL 34 455 -9 501 204 0 10 chr4 96353999 96354102 -105974245 - L1PA15 LINE L1 -1 6164 6063 371 319 128 20 chr4 96355578 96355782 -105972565 + MLT1H LTR MaLR 321 546 -3 228 384 47 0 chr4 96357429 96357515 -105970832 + L2 LINE L2 3134 3223 -49 1431 180 47 11 chr4 96360009 96360287 -105968060 + AluJo SINE Alu 1 288 -24 28 0 0 0 chr4 96360295 96360323 -105968024 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr4 96361124 96361155 -105967192 + AT_rich Low_complexity Low_complexity 1 31 0 1313 104 5 10 chr4 96361155 96361356 -105966991 - L1PB2 LINE L1 -2 6149 5950 24 32 0 0 chr4 96361572 96361603 -105966744 + AT_rich Low_complexity Low_complexity 1 31 0 353 298 85 0 chr4 96361640 96361781 -105966566 + LTR33 LTR ERVL 5 157 -364 22 80 0 0 chr4 96361997 96362047 -105966300 + AT_rich Low_complexity Low_complexity 1 50 0 2019 144 33 30 chr4 96362203 96362565 -105965782 + THE1B LTR MaLR 1 363 -1 1163 124 0 0 chr4 96362624 96362785 -105965562 + THE1B LTR MaLR 1 161 -203 883 143 0 0 chr4 96362785 96362911 -105965436 + THE1-int LTR MaLR 531 656 -924 1167 167 30 0 chr4 96362911 96363109 -105965238 + THE1B LTR MaLR 161 364 0 6683 200 41 61 chr4 96363111 96364794 -105963553 + THE1B-int LTR MaLR 3 1651 0 2112 107 16 66 chr4 96364796 96365237 -105963110 + THE1B LTR MaLR 3 375 0 258 320 114 13 chr4 96366075 96366303 -105962044 - L1ME LINE L1 -511 5651 5401 3637 157 39 3 chr4 96366367 96367035 -105961312 - L1PA16 LINE L1 -10 6156 5465 3857 191 23 25 chr4 96367036 96367953 -105960394 + L1 LINE L1 3885 4799 -1347 1202 201 19 42 chr4 96368249 96368598 -105959749 - L1MD1 LINE L1 -246 6390 2081 4561 172 20 12 chr4 96368608 96369468 -105958879 - L1MC2 LINE L1 -41 6303 5437 3931 222 55 28 chr4 96369458 96371104 -105957243 - L1MD1 LINE L1 -4444 2096 321 * 23 54 0 0 chr4 96372407 96372444 -105955903 + AT_rich Low_complexity Low_complexity 1 37 0 245 177 13 51 chr4 96372445 96372524 -105955823 + T-rich Low_complexity Low_complexity 4 79 0 188 149 21 0 chr4 96373132 96373179 -105955168 + T-rich Low_complexity Low_complexity 5 52 0 22 35 0 0 chr4 96373587 96373616 -105954731 + AT_rich Low_complexity Low_complexity 1 29 0 381 316 0 0 chr4 96374166 96374264 -105954083 - MIR SINE MIR -123 139 42 251 275 38 0 chr4 96375110 96375190 -105953157 - LTR67 LTR ERVL -1 556 474 2823 113 8 2 chr4 96376290 96376687 -105951660 + MLT2A1 LTR ERVL 5 403 -41 204 254 0 0 chr4 96376687 96376746 -105951601 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 24 32 0 0 chr4 96376750 96376781 -105951566 + AT_rich Low_complexity Low_complexity 1 31 0 291 125 36 18 chr4 96376781 96376837 -105951510 + MLT2A1 LTR ERVL 388 444 0 3111 89 0 0 chr4 96376837 96377254 -105951093 + HERVL-A1 LTR ERVL 1 417 -5237 4973 25 0 0 chr4 96377266 96377838 -105950509 - L1PA3 LINE L1 -3 6152 5581 628 14 0 0 chr4 96377840 96377914 -105950433 - L1PA3 LINE L1 -759 5396 5323 * 2915 29 0 0 chr4 96377910 96378257 -105950090 + L1P LINE L1 4253 4599 -1547 8244 76 12 0 chr4 96378257 96379320 -105949027 + HERVL LTR ERVL 2562 3637 -2017 2759 74 0 0 chr4 96379324 96379674 -105948673 - HERVL LTR ERVL -2743 2911 2562 497 51 0 0 chr4 96379674 96379733 -105948614 - L1P LINE L1 -1547 4599 4541 6765 114 6 0 chr4 96379733 96380674 -105947673 + HERVL LTR ERVL 3638 4584 -1070 402 74 0 0 chr4 96380783 96380837 -105947510 + (TA)n Simple_repeat Simple_repeat 2 55 0 1392 291 23 31 chr4 96380837 96381541 -105946806 - L1M4 LINE L1 -1319 4827 4130 513 279 57 26 chr4 96381563 96381792 -105946555 - L1M4 LINE L1 -2281 3865 3630 180 152 0 0 chr4 96382509 96382542 -105945805 + (CA)n Simple_repeat Simple_repeat 2 34 0 25 31 0 0 chr4 96382595 96382627 -105945720 + AT_rich Low_complexity Low_complexity 1 32 0 217 273 15 15 chr4 96382732 96382798 -105945549 + (CATATA)n Simple_repeat Simple_repeat 1 66 0 22 35 0 0 chr4 96383116 96383145 -105945202 + AT_rich Low_complexity Low_complexity 1 29 0 193 277 98 45 chr4 96383225 96383337 -105945010 - MIR SINE MIR -13 249 132 29 47 0 0 chr4 96383805 96383848 -105944499 + AT_rich Low_complexity Low_complexity 1 43 0 801 140 0 0 chr4 96384020 96384156 -105944191 - L1PA7 LINE L1 0 6154 6019 32 0 0 0 chr4 96384371 96384403 -105943944 + AT_rich Low_complexity Low_complexity 1 32 0 343 352 7 0 chr4 96384656 96384798 -105943549 + L2 LINE L2 3163 3305 -8 270 250 33 11 chr4 96384851 96384943 -105943404 + ERVL LTR ERVL 2292 2385 -3379 5758 162 14 82 chr4 96385067 96385735 -105942612 - THE1-int LTR MaLR -62 1518 919 648 63 63 0 chr4 96385735 96385830 -105942517 - AluY SINE Alu -2 309 209 5758 162 14 82 chr4 96385830 96386328 -105942019 - THE1-int LTR MaLR -661 919 389 4038 147 47 62 chr4 96386432 96387236 -105941111 + THE1-int LTR MaLR 61 852 -728 566 99 66 0 chr4 96387238 96387329 -105941018 + AluY SINE Alu 210 306 -5 486 186 0 62 chr4 96387329 96387442 -105940905 + THE1-int LTR MaLR 853 958 -622 273 347 0 37 chr4 96387702 96387889 -105940458 + L1M3de LINE L1 237 678 -5213 1037 286 47 55 chr4 96388306 96388964 -105939383 + L1M3de LINE L1 676 1328 -4563 446 155 36 132 chr4 96389116 96389335 -105939012 - L1MA7 LINE L1 0 6291 6094 315 0 0 0 chr4 96389823 96389858 -105938489 + (TTC)n Simple_repeat Simple_repeat 2 36 0 270 0 0 0 chr4 96389858 96389888 -105938459 + (TAA)n Simple_repeat Simple_repeat 3 32 0 1657 178 0 11 chr4 96389888 96390169 -105938178 - AluSg SINE Alu -28 282 5 212 100 33 33 chr4 96390430 96390490 -105937857 + (TA)n Simple_repeat Simple_repeat 2 61 0 3269 264 21 20 chr4 96390730 96391623 -105936724 - L1M1 LINE L1 -6660 905 12 402 218 115 45 chr4 96392072 96392228 -105936119 - ERVL LTR ERVL -3645 2119 1953 443 233 0 10 chr4 96395110 96395213 -105933134 + L1PA15 LINE L1 6063 6164 -1 1469 222 21 18 chr4 96395930 96396268 -105932079 - MER7A DNA MER2_type 0 346 10 652 112 0 0 chr4 96396328 96396426 -105931921 - AluY SINE Alu -17 294 197 366 281 175 41 chr4 96396568 96396860 -105931487 + HAL1 LINE L1 1467 1797 -710 25 31 0 0 chr4 96397088 96397120 -105931227 + AT_rich Low_complexity Low_complexity 1 32 0 246 169 52 13 chr4 96397225 96397302 -105931045 + HAL1 LINE L1 2282 2361 -146 8999 73 6 29 chr4 96398236 96398870 -105929477 + HERVL-A1 LTR ERVL 4423 5015 -639 2413 125 6 0 chr4 96398870 96399223 -105929124 - THE1A LTR MaLR 0 355 1 8999 73 6 29 chr4 96399223 96399850 -105928497 + HERVL-A1 LTR ERVL 5015 5654 0 2669 95 5 31 chr4 96399850 96400241 -105928106 + MLT2A1 LTR ERVL 1 381 -63 195 42 0 0 chr4 96400241 96400265 -105928082 + (TC)n Simple_repeat Simple_repeat 2 25 0 359 168 35 18 chr4 96400265 96400278 -105928069 + (TTATA)n Simple_repeat Simple_repeat 1 12 -182 297 0 0 0 chr4 96400278 96400311 -105928036 + (TG)n Simple_repeat Simple_repeat 2 34 0 359 168 35 18 chr4 96400311 96400456 -105927891 + (TTATA)n Simple_repeat Simple_repeat 12 194 0 284 149 52 23 chr4 96400460 96400634 -105927713 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 328 86 0 52 chr4 96400666 96400724 -105927623 + MLT2A1 LTR ERVL 390 444 0 255 335 82 47 chr4 96401426 96401596 -105926751 + L2 LINE L2 2920 3095 -177 21 36 0 0 chr4 96401690 96401718 -105926629 + AT_rich Low_complexity Low_complexity 1 28 0 1677 256 128 8 chr4 96401737 96402347 -105926000 + L1ME1 LINE L1 213 895 -5501 240 211 14 14 chr4 96402404 96402475 -105925872 + L1ME1 LINE L1 825 895 -5501 3957 263 66 61 chr4 96402488 96405369 -105922978 + L1ME1 LINE L1 1781 4627 -1588 471 274 16 79 chr4 96405394 96405646 -105922701 + L1ME1 LINE L1 5977 6212 -23 1853 172 0 0 chr4 96408375 96408671 -105919676 + AluSx SINE Alu 4 299 -13 29 47 0 0 chr4 96411249 96411292 -105917055 + AT_rich Low_complexity Low_complexity 1 43 0 1037 71 0 0 chr4 96411464 96411604 -105916743 - L1PA7 LINE L1 0 6154 6015 32 0 0 0 chr4 96411815 96411847 -105916500 + AT_rich Low_complexity Low_complexity 1 32 0 451 310 7 0 chr4 96412100 96412242 -105916105 + L2 LINE L2 3163 3305 -8 366 274 82 7 chr4 96412252 96412387 -105915960 + ERVL LTR ERVL 2241 2385 -3379 369 325 66 0 chr4 96412493 96412644 -105915703 + ERVL LTR ERVL 3387 3547 -2217 389 281 82 76 chr4 96412787 96413115 -105915232 + ERVL LTR ERVL 3646 3975 -1789 1104 223 62 26 chr4 96413716 96414125 -105914222 - MLT2B1 LTR ERVL -57 463 1 268 224 13 13 chr4 96414510 96414586 -105913761 + LTR67 LTR ERVL 442 517 -40 1922 105 18 7 chr4 96414589 96414865 -105913482 + AluSq SINE Alu 3 281 -32 228 35 0 0 chr4 96414868 96414897 -105913450 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 375 309 40 20 chr4 96415198 96415347 -105913000 + L3 LINE CR1 1287 1438 -139 197 377 47 28 chr4 96415340 96415446 -105912901 + MIR SINE MIR 34 141 -121 * 563 161 51 17 chr4 96415463 96415581 -105912766 + LTR37B LTR ERV1 347 468 0 447 281 128 40 chr4 96416002 96416340 -105912007 + MLT1H LTR MaLR 12 408 -147 180 152 0 0 chr4 96417718 96417751 -105910596 + (CA)n Simple_repeat Simple_repeat 2 34 0 25 31 0 0 chr4 96417804 96417836 -105910511 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr4 96418324 96418353 -105909994 + AT_rich Low_complexity Low_complexity 1 29 0 186 298 116 41 chr4 96418433 96418554 -105909793 - MIR SINE MIR -13 249 120 280 323 26 49 chr4 96418783 96419009 -105909338 + L2 LINE L2 3087 3307 -6 25 31 0 0 chr4 96419479 96419511 -105908836 + AT_rich Low_complexity Low_complexity 1 32 0 312 294 35 0 chr4 96419940 96420025 -105908322 - L2 LINE L2 -211 3061 2974 364 291 55 36 chr4 96420417 96420582 -105907765 - MLT1J LTR MaLR -51 460 293 485 294 7 7 chr4 96420651 96420794 -105907553 - MLT1J LTR MaLR -318 193 51 770 271 79 97 chr4 96420801 96421023 -105907324 - L2 LINE L2 -5 3308 3084 629 289 50 10 chr4 96421023 96421224 -105907123 + MER63A DNA MER1_type 2 210 0 770 271 79 97 chr4 96421224 96421864 -105906483 - L2 LINE L2 -229 3084 2421 1075 179 205 20 chr4 96421903 96422200 -105906147 + L1MA9 LINE L1 5938 6289 -23 368 332 99 49 chr4 96424214 96424437 -105903910 - MIR SINE MIR -19 243 10 794 228 58 106 chr4 96424478 96424873 -105903474 + MLT1D LTR MaLR 1 376 -129 302 209 44 0 chr4 96425223 96425314 -105903033 - L1MB3 LINE L1 -2 6181 6087 5816 213 46 14 chr4 96425326 96428223 -105900124 - L1MA4 LINE L1 -289 6011 2926 1618 241 10 19 chr4 96428204 96428614 -105899733 + L1 LINE L1 2219 2624 -3522 * 249 239 28 18 chr4 96428734 96428843 -105899504 - L1M4 LINE L1 -2919 3227 3118 4204 213 79 17 chr4 96429020 96430349 -105897998 - L1MC3 LINE L1 -23 7762 6311 1021 139 23 33 chr4 96430353 96430568 -105897779 - L1MA6 LINE L1 -5 6295 6083 227 88 0 0 chr4 96430573 96430607 -105897740 + L1MA6 LINE L1 6006 6039 -261 2394 190 33 20 chr4 96430607 96431378 -105896969 + MER52A LTR ERV1 401 1278 0 4103 248 59 55 chr4 96431378 96433224 -105895123 - L1MCa LINE L1 -767 5659 3807 934 161 22 59 chr4 96433224 96433514 -105894833 - MLT1A1 LTR MaLR 0 365 1 3207 270 28 47 chr4 96433528 96434061 -105894286 - L1MCa LINE L1 -2629 3797 3255 2143 155 61 10 chr4 96434061 96434468 -105893879 + MSTA LTR MaLR 1 428 0 3207 270 28 47 chr4 96434468 96435461 -105892886 - L1MCa LINE L1 -3171 3255 2304 1298 206 76 3 chr4 96435461 96435752 -105892595 - AluJb SINE Alu 0 312 1 3207 270 28 47 chr4 96435752 96435950 -105892397 - L1MCa LINE L1 -4122 2304 2104 288 261 18 18 chr4 96436707 96436820 -105891527 - L1MCa LINE L1 -861 1926 1708 2391 90 0 3 chr4 96437059 96437371 -105890976 - AluY SINE Alu 0 311 1 522 211 37 3 chr4 96437519 96437660 -105890687 - L1PB4 LINE L1 -3 6153 6023 2051 125 0 33 chr4 96438126 96438431 -105889916 + AluSx SINE Alu 1 295 -17 403 308 85 33 chr4 96438488 96438787 -105889560 + MLT1H1 LTR MaLR 49 412 -183 532 336 131 26 chr4 96438945 96439335 -105889012 - HAL1 LINE L1 -937 1570 1140 234 308 8 51 chr4 96439343 96439460 -105888887 - HAL1 LINE L1 -1642 865 754 3689 208 74 51 chr4 96440083 96440353 -105887994 - L1MCb LINE L1 -4498 2066 1804 2197 94 7 23 chr4 96440353 96440661 -105887686 - AluSc SINE Alu -6 303 1 3689 208 74 51 chr4 96440661 96441186 -105887161 - L1MCb LINE L1 -4760 1804 1292 2321 177 64 6 chr4 96441186 96441667 -105886680 - LTR22 LTR ERVK 0 509 1 3689 208 74 51 chr4 96441667 96442804 -105885543 - L1MCb LINE L1 -5272 1292 3 186 133 0 0 chr4 96443515 96443545 -105884802 + (A)n Simple_repeat Simple_repeat 1 30 0 5151 229 37 30 chr4 96443592 96445100 -105883247 + L1 LINE L1 2168 3685 -2461 469 248 17 0 chr4 96445803 96445920 -105882427 - MER103 DNA DNA -46 120 2 1705 179 114 39 chr4 96446637 96447160 -105881187 - MLT2A2 LTR ERVL 0 554 1 1612 314 154 43 chr4 96448882 96449066 -105879281 - L2 LINE L2 -6 3307 3145 2272 88 3 0 chr4 96449066 96449360 -105878987 - AluY SINE Alu -16 295 1 1612 314 154 43 chr4 96449360 96449897 -105878450 - L2 LINE L2 -168 3145 2669 2274 69 3 35 chr4 96449897 96450216 -105878131 + AluSc SINE Alu 1 309 0 1612 314 154 43 chr4 96450216 96450775 -105877572 - L2 LINE L2 -644 2669 1783 260 257 167 22 chr4 96451836 96452058 -105876289 - HAL1 LINE L1 -146 2361 2108 510 282 191 29 chr4 96452280 96452698 -105875649 - HAL1 LINE L1 -714 1793 1308 758 65 0 49 chr4 96452707 96452830 -105875517 + AluY SINE Alu 195 311 0 1859 172 18 15 chr4 96452867 96453205 -105875142 + MER7A DNA MER2_type 10 346 0 383 296 55 0 chr4 96453207 96453427 -105874920 - HAL1 LINE L1 -1222 1285 1054 1643 283 85 32 chr4 96453477 96454173 -105874174 - L1ME3A LINE L1 -15 6549 5817 322 331 89 32 chr4 96454355 96454603 -105873744 - L1ME3A LINE L1 -4712 1828 1567 1915 247 126 25 chr4 96454683 96455583 -105872764 - L1ME1 LINE L1 -76 6090 5099 1484 179 43 21 chr4 96456004 96456284 -105872063 + AluJo SINE Alu 2 287 -25 224 146 0 21 chr4 96456293 96456341 -105872006 + (TA)n Simple_repeat Simple_repeat 1 47 0 239 217 33 0 chr4 96456388 96456448 -105871899 + L1MC4 LINE L1 6638 6699 -1343 731 150 19 50 chr4 96456656 96456788 -105871559 + L1MA3 LINE L1 6151 6279 -26 2252 139 17 3 chr4 96456788 96457147 -105871200 + THE1B LTR MaLR 1 364 0 731 150 19 50 chr4 96457147 96457174 -105871173 + L1MA3 LINE L1 6279 6305 0 2401 56 7 3 chr4 96458139 96458441 -105869906 - AluY SINE Alu -8 303 1 21 0 0 0 chr4 96458562 96458583 -105869764 + AT_rich Low_complexity Low_complexity 1 21 0 1873 235 81 53 chr4 96459389 96460344 -105868003 - L1ME1 LINE L1 -223 5943 5016 1659 164 7 14 chr4 96460344 96460636 -105867711 - AluJb SINE Alu -5 307 18 1873 235 81 53 chr4 96460636 96460824 -105867523 - L1ME1 LINE L1 -1150 5016 4835 1382 173 48 48 chr4 96460824 96461113 -105867234 - AluJb SINE Alu -13 289 1 1873 235 81 53 chr4 96461113 96461239 -105867108 - L1ME1 LINE L1 -1331 4835 4639 941 144 34 0 chr4 96461243 96461389 -105866958 - Tigger5 DNA MER2_type 0 2323 2173 4690 171 35 1 chr4 96461444 96462297 -105866050 + L1PA16 LINE L1 5285 6166 0 237 204 0 0 chr4 96462304 96462353 -105865994 + L1MB8 LINE L1 6124 6172 -6 1080 180 10 0 chr4 96462994 96463188 -105865159 + MLT2B1 LTR ERVL 3 198 -322 547 264 52 32 chr4 96463170 96463325 -105865022 + MLT2B3 LTR ERVL 397 554 0 * 10806 222 31 13 chr4 96463348 96465601 -105862746 + ERVL-B3 LTR ERVL 22 2314 -3450 358 148 19 0 chr4 96465601 96465655 -105862692 + Tigger5 DNA MER2_type 1 55 -2268 * 373 192 14 14 chr4 96465624 96465697 -105862650 + Tigger5 DNA MER2_type 2251 2323 0 5684 202 13 43 chr4 96465697 96466870 -105861477 + ERVL-B3 LTR ERVL 2313 3450 -2314 21 0 0 0 chr4 96467130 96467151 -105861196 + AT_rich Low_complexity Low_complexity 1 21 0 201 94 0 0 chr4 96467369 96467401 -105860946 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 236 328 0 0 chr4 96468366 96468433 -105859914 - MIR SINE MIR -7 255 189 261 128 0 0 chr4 96469353 96469400 -105858947 + (TG)n Simple_repeat Simple_repeat 1 47 0 720 73 0 0 chr4 96470211 96470307 -105858040 + L1 LINE L1 4710 4805 -1341 355 321 11 84 chr4 96470357 96470547 -105857800 - ERVL LTR ERVL -1961 3035 2860 1424 46 97 0 chr4 96470554 96470750 -105857597 + L1PA8 LINE L1 5953 6167 -5 469 292 70 63 chr4 96470868 96471338 -105857009 - ERVL LTR ERVL -2238 2758 2261 288 274 163 53 chr4 96471568 96471758 -105856589 - LTR16A1 LTR ERVL -246 211 1 738 36 89 5 chr4 96472378 96472591 -105855756 + (TA)n Simple_repeat Simple_repeat 2 232 0 19020 23 0 0 chr4 96472692 96475527 -105852820 + L1HS LINE L1 3125 5959 -196 239 53 0 0 chr4 96475628 96475666 -105852681 + L1MC3 LINE L1 7734 7771 -14 25 0 0 0 chr4 96476046 96476071 -105852276 + AT_rich Low_complexity Low_complexity 1 25 0 9703 176 38 55 chr4 96476076 96477709 -105850638 - L1MA4 LINE L1 -9 7710 6051 1036 110 0 0 chr4 96477709 96477845 -105850502 + AluSq/x SINE Alu 1 136 -176 9703 176 38 55 chr4 96477845 96479680 -105848667 - L1MA4 LINE L1 -1668 6051 4173 1335 226 95 4 chr4 96479705 96480131 -105848216 - L1MD3 LINE L1 -27 6139 5685 317 135 0 0 chr4 96480153 96480205 -105848142 + Alu SINE Alu 249 300 0 993 156 6 12 chr4 96480226 96480399 -105847948 + AluJb SINE Alu 121 292 -20 7857 226 94 21 chr4 96480399 96481064 -105847283 - L1MA4 LINE L1 -3397 4168 3553 684 89 0 0 chr4 96481064 96481165 -105847182 + (TTCC)n Simple_repeat Simple_repeat 4 104 0 7857 226 94 21 chr4 96481165 96483714 -105844633 - L1MA4 LINE L1 -4012 3553 13 755 368 10 15 chr4 96483714 96483810 -105844537 + ERVL LTR ERVL 4714 4809 -955 2162 139 19 8 chr4 96483810 96484170 -105844177 + THE1B LTR MaLR 1 364 0 755 368 10 15 chr4 96484170 96484470 -105843877 + ERVL LTR ERVL 4809 5108 -656 402 121 0 48 chr4 96484714 96484797 -105843550 + L1PA13 LINE L1 6081 6159 -4 1073 247 125 20 chr4 96484899 96485203 -105843144 + LTR40a LTR ERVL 184 519 0 24023 43 42 2 chr4 96485512 96488578 -105839769 + L1P LINE L1 1 3189 -2957 467 107 13 0 chr4 96488808 96488883 -105839464 + (TA)n Simple_repeat Simple_repeat 1 76 0 705 280 52 5 chr4 96489363 96489574 -105838773 - LTR16C LTR ERVL -19 472 252 522 238 87 6 chr4 96489583 96489755 -105838592 - L1M4 LINE L1 -2009 4137 3952 2244 91 7 0 chr4 96490097 96490394 -105837953 - AluSp SINE Alu -14 299 1 245 272 168 69 chr4 96490394 96490596 -105837751 - MIR SINE MIR -39 223 2 433 324 102 35 chr4 96490799 96491001 -105837346 + L1M4 LINE L1 4074 4261 -1885 1778 229 0 5 chr4 96491001 96491368 -105836979 - MLT1A1 LTR MaLR 0 365 1 433 324 102 35 chr4 96491368 96491539 -105836808 + L1M4 LINE L1 4261 4472 -1674 268 214 29 0 chr4 96492757 96492827 -105835520 - MER116 DNA Mariner 0 80 9 204 40 0 0 chr4 96493625 96493650 -105834697 + (A)n Simple_repeat Simple_repeat 1 25 0 4546 248 64 53 chr4 96493844 96494365 -105833982 + L1MB7 LINE L1 23 537 -6107 2576 106 8 0 chr4 96494365 96494723 -105833624 + THE1B LTR MaLR 2 362 -2 4546 248 64 53 chr4 96494723 96497432 -105830915 + L1MB7 LINE L1 537 3396 -3248 4467 227 65 18 chr4 96497431 96497449 -105830898 + L1MB7 LINE L1 4401 4417 -2265 * 2373 65 0 20 chr4 96497449 96497755 -105830592 + AluY SINE Alu 1 300 -11 4467 227 65 18 chr4 96497755 96498421 -105829926 + L1MB7 LINE L1 4417 5050 -1632 1908 170 0 0 chr4 96498421 96498721 -105829626 + AluSx SINE Alu 1 300 -12 4467 227 65 18 chr4 96498721 96498768 -105829579 + L1MB7 LINE L1 5050 5093 -1589 2201 144 28 17 chr4 96498768 96499128 -105829219 - THE1B LTR MaLR 0 364 1 4467 227 65 18 chr4 96499128 96500567 -105827780 + L1MB7 LINE L1 5093 6681 -1 24 0 0 0 chr4 96500599 96500623 -105827724 + AT_rich Low_complexity Low_complexity 1 24 0 587 123 0 0 chr4 96500623 96500704 -105827643 + AluSg/x SINE Alu 216 296 -14 846 172 105 5 chr4 96501013 96501222 -105827125 + ORSL DNA AcHobo 45 274 -1 591 37 92 18 chr4 96502976 96503140 -105825207 + (TA)n Simple_repeat Simple_repeat 1 176 0 47503 58 27 21 chr4 96503292 96509128 -105819219 - Harlequin LTR ERV1 -557 6339 463 2489 76 0 0 chr4 96509128 96509432 -105818915 - AluY SINE Alu -7 304 1 47503 58 27 21 chr4 96509432 96509898 -105818449 - Harlequin LTR ERV1 -6433 463 1 1919 180 93 32 chr4 96509898 96510360 -105817987 - LTR2B LTR ERV1 0 490 1 840 206 5 0 chr4 96510360 96510544 -105817803 - L1MA4 LINE L1 -86 6214 6030 799 273 108 35 chr4 96510548 96511003 -105817344 - HAL1 LINE L1 -417 2090 1603 222 91 0 0 chr4 96511435 96511468 -105816879 + (TC)n Simple_repeat Simple_repeat 1 33 0 299 252 221 15 chr4 96511529 96511660 -105816687 - LTR41 LTR ERVL -615 158 1 637 218 28 162 chr4 96511691 96512159 -105816188 - HAL1 LINE L1 -945 1562 1158 296 281 8 78 chr4 96512220 96512348 -105815999 + L2 LINE L2 3191 3309 -4 418 257 46 33 chr4 96512364 96512605 -105815742 - HAL1 LINE L1 -1424 1083 840 281 307 37 37 chr4 96513145 96513334 -105815013 - L2 LINE L2 -848 2466 2278 259 232 0 0 chr4 96513930 96513986 -105814361 - MLT1D LTR MaLR -2 503 448 18620 175 32 16 chr4 96513989 96516477 -105811870 + L1MA1 LINE L1 16 2464 -5257 1992 118 6 46 chr4 96516477 96516800 -105811547 + AluSg SINE Alu 1 310 0 18620 175 32 16 chr4 96516800 96517713 -105810634 + L1MA1 LINE L1 2464 3361 -4360 222 37 0 0 chr4 96517713 96517740 -105810607 + (GAAA)n Simple_repeat Simple_repeat 1 27 0 18620 175 32 16 chr4 96517740 96519800 -105808547 + L1MA1 LINE L1 3361 5387 -2334 1893 144 0 45 chr4 96519800 96520112 -105808235 + AluSx SINE Alu 3 300 -12 18620 175 32 16 chr4 96520112 96522117 -105806230 + L1MA1 LINE L1 5387 7615 -106 905 282 91 30 chr4 96522118 96522480 -105805867 - MLT1D LTR MaLR -62 443 60 1247 225 58 7 chr4 96522537 96522813 -105805534 - AluJo SINE Alu -20 292 3 3577 183 62 26 chr4 96524282 96525040 -105803307 - LTR1 LTR ERV1 0 785 1 387 297 36 46 chr4 96525332 96525487 -105802860 + L1MCb LINE L1 46 201 -6060 3370 79 25 0 chr4 96525487 96525929 -105802418 + MLT2A2 LTR ERVL 1 453 0 387 297 36 46 chr4 96525929 96526105 -105802242 + L1MCb LINE L1 201 559 -5702 1729 190 15 54 chr4 96526254 96526660 -105801687 - MLT1B LTR MaLR 0 390 1 1466 277 62 50 chr4 96526809 96527792 -105800555 + L1MCb LINE L1 572 1698 -4866 258 32 0 0 chr4 96527792 96527823 -105800524 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1466 277 62 50 chr4 96527823 96528109 -105800238 + L1MCb LINE L1 1698 1979 -4585 1195 325 46 17 chr4 96528139 96528658 -105799689 + L1M3a LINE L1 11 727 -5228 353 368 0 0 chr4 96528954 96529090 -105799257 + L1MA9 LINE L1 1231 1366 -5343 * 872 198 4 21 chr4 96529089 96529326 -105799021 + L1MA9 LINE L1 1788 2020 -4769 1962 129 29 57 chr4 96529329 96529715 -105798632 - THE1C LTR MaLR 0 375 1 2480 207 33 25 chr4 96529715 96530407 -105797940 - L1M2 LINE L1 -4320 2848 2146 253 369 0 0 chr4 96530406 96530509 -105797838 - L1M2 LINE L1 -5343 1745 1643 * 433 100 0 0 chr4 96530599 96530659 -105797688 + THE1-int LTR MaLR 258 317 -1263 6982 216 65 25 chr4 96530676 96532864 -105795483 + L1MA9 LINE L1 3806 6081 -743 2401 173 14 16 chr4 96532866 96533295 -105795052 + MSTA LTR MaLR 1 428 0 5606 203 46 4 chr4 96533295 96534402 -105793945 + MSTA-int LTR MaLR 1 1154 -497 1641 151 59 19 chr4 96534417 96534741 -105793606 - THE1C LTR MaLR -37 338 2 9409 139 40 4 chr4 96534742 96536266 -105792081 - THE1C-int LTR MaLR 0 1580 2 1688 157 58 25 chr4 96536267 96536630 -105791717 - THE1C LTR MaLR 0 375 1 2494 203 10 8 chr4 96536630 96536883 -105791464 + MSTA-int LTR MaLR 1158 1414 -237 207 0 0 0 chr4 96536883 96536906 -105791441 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2494 203 10 8 chr4 96536906 96537145 -105791202 + MSTA-int LTR MaLR 1414 1651 0 2148 153 32 39 chr4 96537145 96537576 -105790771 + MSTA LTR MaLR 1 428 0 3690 173 38 60 chr4 96537582 96537924 -105790423 + L1MA9 LINE L1 6085 6433 -521 261 0 0 0 chr4 96537924 96537953 -105790394 + (TG)n Simple_repeat Simple_repeat 1 29 0 3690 173 38 60 chr4 96537953 96538499 -105789848 + L1MA9 LINE L1 6433 6954 0 237 33 0 0 chr4 96539524 96539554 -105788793 + (CA)n Simple_repeat Simple_repeat 1 30 0 1402 123 12 29 chr4 96540219 96540462 -105787885 + MER21A LTR ERV1 19 257 -674 * 2772 174 70 24 chr4 96540460 96541000 -105787347 + MER21A LTR ERV1 367 931 0 29963 117 15 58 chr4 96542526 96548968 -105779379 + L1PA7 LINE L1 2 6154 0 221 50 0 75 chr4 96549593 96549633 -105778714 + (GGAAA)n Simple_repeat Simple_repeat 3 39 0 292 221 52 26 chr4 96550033 96550110 -105778237 - L2 LINE L2 -11 3302 3224 1664 201 153 43 chr4 96550916 96551379 -105776968 + MER67D LTR ERV1 1 514 0 3024 180 85 20 chr4 96551670 96552353 -105775994 + LTR8A LTR ERV1 1 727 0 243 233 0 17 chr4 96552644 96552704 -105775643 + L2 LINE L2 884 942 -2372 889 168 6 6 chr4 96552723 96552890 -105775457 - MER41C LTR ERV1 0 554 388 358 87 0 0 chr4 96552891 96552937 -105775410 - MER41B LTR ERV1 0 635 590 2914 126 54 15 chr4 96552938 96553456 -105774891 - MER41A-int LTR ERV1 -2370 3576 3039 2476 131 61 41 chr4 96553458 96553973 -105774374 - MER41A-int LTR ERV1 -3845 3971 1359 947 181 7 6 chr4 96554005 96554181 -105774166 - MER41A-int LTR ERV1 -4563 3253 930 * 4212 137 45 11 chr4 96554165 96554972 -105773375 - MER41A-int LTR ERV1 -5241 705 1 4025 89 9 5 chr4 96555037 96555589 -105772758 - MER41A LTR ERV1 0 554 1 1154 257 112 121 chr4 96555594 96556752 -105771595 + L2 LINE L2 966 2113 -1201 560 283 28 39 chr4 96556756 96556936 -105771411 - MER5B DNA MER1_type 0 178 1 1166 325 89 34 chr4 96557443 96558478 -105769869 + L2 LINE L2 2200 3310 -3 883 149 0 6 chr4 96560911 96561072 -105767275 + L1MA4 LINE L1 6130 6289 -11 480 246 108 10 chr4 96561662 96561857 -105766490 - MLT2F LTR ERVL -28 635 422 479 285 139 0 chr4 96562015 96562180 -105766167 - MLT2F LTR ERVL -470 193 6 812 118 43 12 chr4 96562199 96562324 -105766023 - L1P LINE L1 -768 5378 5245 4953 100 11 0 chr4 96562324 96563029 -105765318 + L1PA8 LINE L1 5449 6163 -9 812 118 43 12 chr4 96563029 96563064 -105765283 - L1P LINE L1 -901 5245 5213 * 814 279 10 47 chr4 96563053 96563440 -105764907 - MST-int LTR MaLR -1118 533 161 3684 55 0 0 chr4 96563546 96563997 -105764350 + Harlequin LTR ERV1 6446 6896 0 1452 239 57 36 chr4 96563997 96564206 -105764141 + LTR2 LTR ERV1 1 204 -245 252 0 0 0 chr4 96564206 96564234 -105764113 + (TTCTG)n Simple_repeat Simple_repeat 2 29 0 1452 239 57 36 chr4 96564234 96564464 -105763883 + LTR2 LTR ERV1 204 449 0 265 177 16 0 chr4 96564465 96564527 -105763820 + L1MA4 LINE L1 6212 6274 -26 28 61 0 0 chr4 96564545 96564594 -105763753 + AT_rich Low_complexity Low_complexity 1 49 0 23 92 0 0 chr4 96564612 96564677 -105763670 + AT_rich Low_complexity Low_complexity 1 65 0 2197 132 15 0 chr4 96564677 96564999 -105763348 + THE1B LTR MaLR 1 327 -37 556 135 31 10 chr4 96564999 96565095 -105763252 + MER4A LTR ERV1 1 98 -566 1787 141 10 17 chr4 96565146 96565436 -105762911 + MER4A LTR ERV1 371 658 -6 2840 141 60 76 chr4 96565447 96566141 -105762206 + MER4A-int LTR ERV1 1 853 -5745 1303 244 42 7 chr4 96566164 96566471 -105761876 + MER4A-int LTR ERV1 1844 2161 -4170 4899 138 93 50 chr4 96566524 96567463 -105760884 + MER4A-int LTR ERV1 170 1358 -428 219 114 0 0 chr4 96567463 96567498 -105760849 + (TG)n Simple_repeat Simple_repeat 2 36 0 4899 138 93 50 chr4 96567498 96567511 -105760836 + MER4A-int LTR ERV1 1358 1369 -417 1943 108 26 31 chr4 96567519 96567871 -105760476 + MER4A-int LTR ERV1 1756 2105 -4493 3324 138 68 45 chr4 96567876 96568110 -105760237 + MER4A-int LTR ERV1 2724 2951 -3647 2275 106 0 0 chr4 96568110 96568402 -105759945 + AluSq SINE Alu 3 294 -19 3324 138 68 45 chr4 96568402 96568959 -105759388 + MER4A-int LTR ERV1 2951 3533 -3065 15751 112 50 22 chr4 96569012 96571698 -105756649 + MER4A-int LTR ERV1 3837 6596 -2 1885 115 62 105 chr4 96571731 96572199 -105756148 - LTR7 LTR ERV1 -2 448 1 19179 71 6 4 chr4 96572199 96574883 -105753464 - HERVH LTR ERV1 0 7713 1945 8420 144 32 40 chr4 96574917 96576649 -105751698 - HERVH LTR ERV1 -5242 1514 1 1880 117 60 104 chr4 96576651 96577120 -105751227 - LTR7 LTR ERV1 -2 448 1 361 197 0 13 chr4 96577120 96577196 -105751151 + MER4A LTR ERV1 24 98 -566 1459 162 228 18 chr4 96577196 96577530 -105750817 + MER4A LTR ERV1 261 664 0 261 150 0 0 chr4 96577531 96577571 -105750776 + THE1B LTR MaLR 325 364 0 9423 123 53 35 chr4 96577571 96579124 -105749223 + THE1B-int LTR MaLR 1 1580 0 2425 141 3 0 chr4 96579124 96579487 -105748860 + THE1B LTR MaLR 1 364 0 311 253 111 37 chr4 96579496 96579658 -105748689 + HAL1 LINE L1 2200 2373 -134 223 147 59 15 chr4 96580007 96580075 -105748272 + (TA)n Simple_repeat Simple_repeat 1 71 0 585 326 48 13 chr4 96580381 96580611 -105747736 - MIR SINE MIR -17 245 8 25 0 0 0 chr4 96580664 96580689 -105747658 + AT_rich Low_complexity Low_complexity 1 25 0 855 280 34 8 chr4 96580887 96581126 -105747221 + MIR SINE MIR 2 246 -16 314 206 0 0 chr4 96581213 96581281 -105747066 - MER92C LTR ERV1 0 554 487 258 247 0 39 chr4 96581883 96581960 -105746387 - MER31-int LTR ERV1 -381 4555 4482 318 226 86 0 chr4 96582025 96582118 -105746229 - MER31-int LTR ERV1 -466 4470 4370 293 238 127 123 chr4 96582167 96582411 -105745936 - LTR37A LTR ERV1 -181 245 1 2468 247 36 69 chr4 96582495 96582653 -105745694 - MER31-int LTR ERV1 -752 4184 4022 1477 199 57 80 chr4 96582653 96583166 -105745181 + MLT1D LTR MaLR 1 501 -4 2468 247 36 69 chr4 96583166 96583945 -105744402 - MER31-int LTR ERV1 -914 4022 3282 198 0 0 0 chr4 96583945 96583967 -105744380 + (TTG)n Simple_repeat Simple_repeat 2 23 0 2468 247 36 69 chr4 96583967 96584076 -105744271 - MER31-int LTR ERV1 -1654 3282 3171 180 231 88 88 chr4 96584752 96584843 -105743504 - L3 LINE CR1 -1257 320 230 4253 192 50 57 chr4 96584878 96585676 -105742671 - L1MC2 LINE L1 -9 6335 5533 2266 65 0 31 chr4 96585676 96586004 -105742343 + AluY SINE Alu 1 319 0 4253 192 50 57 chr4 96586004 96587063 -105741284 - L1MC2 LINE L1 -811 5533 4488 350 115 0 0 chr4 96587379 96587431 -105740916 - MER92C LTR ERV1 0 554 503 462 284 35 76 chr4 96587490 96587687 -105740660 - MER92C LTR ERV1 -365 189 1 355 273 21 7 chr4 96587962 96588105 -105740242 - MER31-int LTR ERV1 -3110 1826 1682 203 179 0 0 chr4 96588139 96588178 -105740169 + A-rich Low_complexity Low_complexity 1 39 0 194 325 169 24 chr4 96588367 96588622 -105739725 - L2 LINE L2 -428 2886 2595 698 182 7 0 chr4 96588849 96588992 -105739355 - L1 LINE L1 -1598 4548 4405 1989 157 11 136 chr4 96588992 96589551 -105738796 + LTR22B LTR ERVK 1 489 -3 3253 207 11 8 chr4 96589586 96590324 -105738023 - L1 LINE L1 -1735 4411 3672 4952 135 54 10 chr4 96590342 96591598 -105736749 + L1PA16 LINE L1 4873 6166 0 1182 280 88 14 chr4 96591960 96592517 -105735830 + HAL1 LINE L1 1320 1917 -590 365 109 0 0 chr4 96593229 96593284 -105735063 - MLT2A2 LTR ERVL 0 453 399 455 98 0 0 chr4 96593315 96593376 -105734971 + MLT2A1 LTR ERVL 269 329 -115 423 125 21 10 chr4 96593376 96593472 -105734875 + (TA)n Simple_repeat Simple_repeat 1 97 0 254 114 0 0 chr4 96593474 96593518 -105734829 - MLT2A1 LTR ERVL -44 400 357 384 178 0 0 chr4 96593518 96593591 -105734756 + (TA)n Simple_repeat Simple_repeat 2 74 0 2853 91 20 5 chr4 96593608 96594002 -105734345 - MLT2A1 LTR ERVL -44 400 1 583 237 188 54 chr4 96594930 96595378 -105732969 + Charlie4a DNA MER1_type 1 508 0 1327 92 0 38 chr4 96596054 96596414 -105731933 + AluY SINE Alu 104 456 0 13329 200 43 36 chr4 96597496 96601394 -105726953 - L1P3 LINE L1 -2421 4040 10 503 299 52 0 chr4 96601441 96601575 -105726772 + MIR SINE MIR 2 142 -120 374 282 8 16 chr4 96601575 96601699 -105726648 - MLT1H LTR MaLR -384 165 43 1847 178 0 0 chr4 96601740 96602033 -105726314 - AluJb SINE Alu -9 303 11 262 324 10 20 chr4 96603142 96603244 -105725103 - MLT2E LTR ERVL -493 135 35 213 108 14 68 chr4 96603389 96603463 -105724884 + (TA)n Simple_repeat Simple_repeat 1 70 0 406 106 28 67 chr4 96603483 96603662 -105724685 + (TATAA)n Simple_repeat Simple_repeat 5 176 0 217 233 44 0 chr4 96603666 96603756 -105724591 + (TA)n Simple_repeat Simple_repeat 1 94 0 672 0 94 0 chr4 96603767 96603895 -105724452 + (TA)n Simple_repeat Simple_repeat 1 140 0 859 172 105 5 chr4 96605649 96605858 -105722489 - ORSL DNA AcHobo -1 274 45 583 123 0 0 chr4 96606167 96606248 -105722099 - AluSg/x SINE Alu -14 296 216 24 0 0 0 chr4 96606248 96606272 -105722075 + AT_rich Low_complexity Low_complexity 1 24 0 4467 201 56 8 chr4 96606304 96607741 -105720606 - L1MB7 LINE L1 -1 6825 5321 1920 135 29 55 chr4 96607743 96608128 -105720219 + THE1C LTR MaLR 1 375 0 895 198 4 21 chr4 96608131 96608368 -105719979 - L1MB7 LINE L1 -4769 2020 1788 346 368 0 0 chr4 96608367 96608503 -105719844 - L1MB7 LINE L1 -5343 1366 1231 * 1185 323 46 17 chr4 96608799 96609318 -105719029 - L1M3a LINE L1 -5228 727 11 424 242 40 0 chr4 96609322 96609446 -105718901 - L1M1 LINE L1 -4559 3006 2878 1295 281 52 33 chr4 96609615 96610356 -105717991 - L1MCb LINE L1 -4851 1194 570 1238 235 20 57 chr4 96610503 96610908 -105717439 + MLT1B LTR MaLR 1 390 0 297 272 22 36 chr4 96611071 96611199 -105717148 - L1MCb LINE L1 -5708 337 229 3288 91 18 0 chr4 96611235 96611675 -105716672 - MLT2A2 LTR ERVL -5 448 1 313 325 33 20 chr4 96611679 96611830 -105716517 - L1MCb LINE L1 -5847 198 46 3369 194 62 26 chr4 96612121 96612879 -105715468 + LTR1 LTR ERV1 1 785 0 846 244 68 28 chr4 96613304 96613690 -105714657 - L1 LINE L1 -1800 4346 3919 2436 50 0 10 chr4 96613690 96613993 -105714354 - AluY SINE Alu -11 300 1 24 53 0 0 chr4 96614176 96614214 -105714133 + AT_rich Low_complexity Low_complexity 1 38 0 30 0 0 0 chr4 96614416 96614446 -105713901 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr4 96614669 96614707 -105713640 + AT_rich Low_complexity Low_complexity 1 38 0 321 295 39 47 chr4 96615182 96615311 -105713036 + MIR SINE MIR 86 213 -49 209 222 16 0 chr4 96615595 96615658 -105712689 + (TA)n Simple_repeat Simple_repeat 1 64 0 311 328 106 38 chr4 96615662 96616086 -105712261 - L1 LINE L1 -2997 3149 2697 34 24 0 0 chr4 96616100 96616141 -105712206 + AT_rich Low_complexity Low_complexity 1 41 0 31 0 0 0 chr4 96618021 96618052 -105710295 + AT_rich Low_complexity Low_complexity 1 31 0 28 79 0 0 chr4 96620105 96620168 -105708179 + AT_rich Low_complexity Low_complexity 1 63 0 443 169 0 12 chr4 96620878 96620961 -105707386 + THE1B LTR MaLR 1 82 -346 186 94 19 38 chr4 96620985 96621038 -105707309 + (TTTAA)n Simple_repeat Simple_repeat 5 56 0 1340 161 18 48 chr4 96621064 96621337 -105707010 + THE1B LTR MaLR 98 362 -2 8934 127 18 82 chr4 96621341 96621914 -105706433 + THE1C-int LTR MaLR 3 611 -969 12895 139 11 7 chr4 96621914 96624884 -105703463 - L1PA10 LINE L1 -5 6163 3178 8934 127 18 82 chr4 96624884 96625996 -105702351 + THE1C-int LTR MaLR 611 1580 0 1659 186 52 27 chr4 96625996 96626362 -105701985 + THE1C LTR MaLR 1 375 0 1774 159 14 0 chr4 96628851 96629140 -105699207 - AluSx SINE Alu -13 299 7 222 365 19 10 chr4 96630262 96630366 -105697981 - L2 LINE L2 -271 3042 2938 23 33 0 0 chr4 96630371 96630401 -105697946 + AT_rich Low_complexity Low_complexity 1 30 0 39 22 0 0 chr4 96630616 96630662 -105697685 + AT_rich Low_complexity Low_complexity 1 46 0 326 277 183 35 chr4 96630832 96631034 -105697313 + MLT1H LTR MaLR 121 352 -197 1785 169 0 0 chr4 96631076 96631355 -105696992 - AluSx SINE Alu -30 282 4 326 194 0 0 chr4 96631364 96631426 -105696921 + MLT1H LTR MaLR 488 549 0 183 42 0 0 chr4 96632145 96632169 -105696178 + (CAA)n Simple_repeat Simple_repeat 2 25 0 333 0 0 0 chr4 96632215 96632252 -105696095 + (TA)n Simple_repeat Simple_repeat 1 37 0 22 56 0 0 chr4 96633063 96633099 -105695248 + AT_rich Low_complexity Low_complexity 1 36 0 242 314 12 12 chr4 96633188 96633274 -105695073 + L2 LINE L2 3222 3307 -6 8265 223 69 35 chr4 96633634 96634428 -105693919 + L1M2b LINE L1 1 766 -6443 3517 151 10 34 chr4 96634428 96635044 -105693303 - LTR26 LTR ERV1 0 603 3 8265 223 69 35 chr4 96635044 96637303 -105691044 + L1M2b LINE L1 766 3257 -3952 2236 82 0 47 chr4 96637303 96637621 -105690726 + AluY SINE Alu 1 303 -8 249 159 0 0 chr4 96637621 96637665 -105690682 + (TA)n Simple_repeat Simple_repeat 1 44 0 3919 212 20 6 chr4 96637690 96638641 -105689706 + L1M2b LINE L1 3275 4238 -2970 6123 30 8 0 chr4 96638641 96639354 -105688993 + L1PA3 LINE L1 5417 6155 0 189 0 0 0 chr4 96641706 96641727 -105686620 + (T)n Simple_repeat Simple_repeat 1 21 0 699 258 83 65 chr4 96642441 96642505 -105685842 - MLT1J1 LTR MaLR 0 446 385 1863 174 41 93 chr4 96642505 96642998 -105685349 - MLT1C LTR MaLR 0 467 1 699 258 83 65 chr4 96642998 96643191 -105685156 - MLT1J1 LTR MaLR -61 385 176 2291 88 3 0 chr4 96643191 96643496 -105684851 + AluSp SINE Alu 1 306 -7 699 258 83 65 chr4 96643496 96643647 -105684700 - MLT1J1 LTR MaLR -270 176 29 307 264 14 71 chr4 96643737 96643877 -105684470 - MER94 DNA DNA -2 132 1 1203 163 12 133 chr4 96644253 96644584 -105683763 - AluJb SINE Alu -11 291 1 1259 193 63 79 chr4 96644745 96645115 -105683232 - MLT1A1 LTR MaLR 0 457 2 26 0 0 0 chr4 96645432 96645458 -105682889 + AT_rich Low_complexity Low_complexity 1 26 0 193 194 16 16 chr4 96646010 96646072 -105682275 + GA-rich Low_complexity Low_complexity 3 64 0 184 159 45 23 chr4 96647021 96647062 -105681285 - L2 LINE L2 -17 3296 3255 241 281 39 124 chr4 96647062 96647215 -105681132 + MIR3 SINE MIR 3 142 -66 11456 182 39 23 chr4 96647988 96648561 -105679786 + L1MA4A LINE L1 2597 3159 -3144 6371 15 4 1 chr4 96648561 96649278 -105679069 + L1PA3 LINE L1 5417 6155 0 11456 182 39 23 chr4 96649278 96652180 -105676167 + L1MA4A LINE L1 3159 6127 -176 3496 114 48 0 chr4 96652184 96652728 -105675619 - L1PA13 LINE L1 -3 6160 5591 977 128 23 0 chr4 96652728 96652899 -105675448 + L1MA4 LINE L1 6119 6294 -6 1867 56 122 70 chr4 96653323 96653609 -105674738 - AluY SINE Alu -10 301 1 2264 126 14 22 chr4 96654126 96654492 -105673855 - THE1B LTR MaLR 0 364 2 472 316 11 17 chr4 96654667 96654841 -105673506 - MIR SINE MIR -21 241 69 304 359 41 46 chr4 96655935 96656130 -105672217 - MIR3 SINE MIR -9 199 6 1457 198 28 88 chr4 96656458 96656922 -105671425 - MER63B DNA MER1_type 0 436 1 6360 180 43 9 chr4 96657044 96658267 -105670080 + ERVL-D LTR ERVL 4493 5757 -7 1052 202 35 127 chr4 96658267 96658723 -105669624 + MLT2D LTR ERVL 1 414 0 374 162 15 0 chr4 96658841 96658909 -105669438 - ERVL LTR ERVL -693 5071 5003 22 80 0 0 chr4 96660450 96660500 -105667847 + AT_rich Low_complexity Low_complexity 1 50 0 11902 210 26 27 chr4 96661776 96663655 -105664692 + L1PA7 LINE L1 2131 4019 -2137 11890 92 3 1 chr4 96663655 96666095 -105662252 + L1PA7 LINE L1 3706 6152 -2 11902 210 26 27 chr4 96666095 96667769 -105660578 + L1PA7 LINE L1 4019 5692 -464 1065 275 34 42 chr4 96667792 96667843 -105660504 - L1ME LINE L1 -380 5784 5734 4522 103 7 10 chr4 96667843 96668525 -105659822 - L1PB2 LINE L1 0 6151 5472 1065 275 34 42 chr4 96668525 96668644 -105659703 - L1ME LINE L1 -430 5734 5616 979 214 91 5 chr4 96668644 96668864 -105659483 + MER8 DNA MER2_type 1 239 0 1065 275 34 42 chr4 96668864 96669061 -105659286 - L1ME LINE L1 -548 5616 5419 2346 82 0 10 chr4 96669061 96669365 -105658982 + AluY SINE Alu 7 307 -4 306 0 0 0 chr4 96669365 96669399 -105658948 + (TA)n Simple_repeat Simple_repeat 2 35 0 1065 275 34 42 chr4 96669399 96669435 -105658912 - L1ME LINE L1 -743 5421 5381 23 108 0 0 chr4 96669604 96669697 -105658650 + AT_rich Low_complexity Low_complexity 1 93 0 24 53 0 0 chr4 96669749 96669787 -105658560 + AT_rich Low_complexity Low_complexity 1 38 0 1304 178 107 4 chr4 96670041 96670192 -105658155 - AluJo SINE Alu -12 300 166 305 23 0 23 chr4 96670192 96670235 -105658112 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1304 178 107 4 chr4 96670235 96670353 -105657994 - AluJo SINE Alu -146 166 3 217 245 0 20 chr4 96670710 96670759 -105657588 - L3b LINE CR1 -8 1575 1528 6143 175 20 13 chr4 96670833 96672034 -105656313 - L1MA8 LINE L1 -967 5179 3971 4719 156 25 33 chr4 96672025 96672457 -105655890 + L1MA8 LINE L1 5163 5597 -694 * 1794 127 4 0 chr4 96672457 96672710 -105655637 - AluSx SINE Alu -12 300 47 4719 156 25 33 chr4 96672710 96673354 -105654993 + L1MA8 LINE L1 5597 6230 -61 215 130 0 22 chr4 96673362 96673408 -105654939 + (TA)n Simple_repeat Simple_repeat 2 46 0 285 178 14 27 chr4 96673419 96673492 -105654855 + L1MA8 LINE L1 6217 6288 -3 201 333 58 14 chr4 96673590 96673659 -105654688 - MIR3 SINE MIR -131 77 6 22 0 0 0 chr4 96673961 96673983 -105654364 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr4 96674250 96674283 -105654064 + AT_rich Low_complexity Low_complexity 1 33 0 1717 181 3 3 chr4 96674283 96674575 -105653772 - AluJb SINE Alu -15 297 6 22 56 0 0 chr4 96674667 96674703 -105653644 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 96674919 96674940 -105653407 + AT_rich Low_complexity Low_complexity 1 21 0 211 309 18 0 chr4 96675090 96675145 -105653202 + L2 LINE L2 3249 3304 -9 238 239 202 28 chr4 96675243 96675352 -105652995 - MIR SINE MIR -132 130 3 342 0 0 0 chr4 96676735 96676773 -105651574 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 2732 99 0 0 chr4 96677125 96677489 -105650858 - THE1B LTR MaLR 0 364 1 507 359 63 33 chr4 96677509 96678007 -105650340 - L2 LINE L2 -275 3038 2526 21 0 0 0 chr4 96678148 96678169 -105650178 + AT_rich Low_complexity Low_complexity 1 21 0 235 345 12 0 chr4 96678176 96678260 -105650087 + L1M2 LINE L1 10 94 -6755 11883 234 30 11 chr4 96679491 96680039 -105648308 + L1PA16 LINE L1 777 1313 -4910 1958 139 78 23 chr4 96680039 96680384 -105647963 - THE1B LTR MaLR 0 364 1 11883 234 30 11 chr4 96680384 96685123 -105643224 + L1PA16 LINE L1 1313 6218 -5 1466 284 56 31 chr4 96685530 96686175 -105642172 - MLT2F LTR ERVL -2 661 1 21 0 0 0 chr4 96686593 96686614 -105641733 + AT_rich Low_complexity Low_complexity 1 21 0 1667 288 82 26 chr4 96687694 96688734 -105639613 - L1ME3A LINE L1 -23 6147 5001 3833 112 26 0 chr4 96688734 96689299 -105639048 - LTR19B LTR ERV1 0 580 1 1667 288 82 26 chr4 96689299 96689648 -105638699 - L1ME3A LINE L1 -1169 5001 4673 22 0 0 0 chr4 96690912 96690934 -105637413 + AT_rich Low_complexity Low_complexity 1 22 0 2768 130 2 19 chr4 96691083 96691515 -105636832 - MER61B LTR ERV1 0 425 1 445 266 81 40 chr4 96691710 96691883 -105636464 - MIR SINE MIR -13 249 70 307 316 77 34 chr4 96692023 96692140 -105636207 + MLT1K LTR MaLR 111 232 -356 294 203 0 16 chr4 96692386 96692450 -105635897 + MLT1K LTR MaLR 523 585 -3 288 0 0 0 chr4 96692789 96692821 -105635526 + (TG)n Simple_repeat Simple_repeat 1 32 0 429 290 74 37 chr4 96693778 96693995 -105634352 - L2 LINE L2 0 3313 3089 254 366 0 57 chr4 96694093 96694216 -105634131 - MIR SINE MIR -67 141 26 10173 156 28 15 chr4 96694869 96696811 -105631536 + L1MA2 LINE L1 3379 5375 -929 2323 97 0 0 chr4 96696811 96697109 -105631238 + AluSg SINE Alu 2 299 -11 10173 156 28 15 chr4 96697109 96697821 -105630526 + L1MA2 LINE L1 5375 6076 -228 1555 106 4 8 chr4 96699955 96700190 -105628157 + L1MA2 LINE L1 6071 6304 0 22 0 0 0 chr4 96700203 96700225 -105628122 + AT_rich Low_complexity Low_complexity 1 22 0 910 257 83 90 chr4 96700593 96701049 -105627298 - LTR40b LTR ERVL -9 453 1 1557 88 60 0 chr4 96701431 96701648 -105626699 + MER30 DNA MER1_type 1 230 0 33 43 0 0 chr4 96701736 96701783 -105626564 + AT_rich Low_complexity Low_complexity 1 47 0 306 246 54 149 chr4 96702258 96702586 -105625761 - MLT1H LTR MaLR -136 413 136 1747 162 19 77 chr4 96702586 96703000 -105625347 - MLT1B LTR MaLR 0 390 1 306 246 54 149 chr4 96703000 96703115 -105625232 - MLT1H LTR MaLR -413 136 12 457 240 103 25 chr4 96703130 96703231 -105625116 - L1MDa LINE L1 -4550 1990 1898 1767 147 4 0 chr4 96703231 96703497 -105624850 - AluSx SINE Alu -45 267 1 457 240 103 25 chr4 96703497 96703703 -105624644 - L1MDa LINE L1 -4642 1898 1696 478 128 54 0 chr4 96704311 96704460 -105623887 + (TA)n Simple_repeat Simple_repeat 2 158 0 26 0 0 0 chr4 96704463 96704489 -105623858 + AT_rich Low_complexity Low_complexity 1 26 0 2040 84 10 27 chr4 96704489 96704785 -105623562 - AluSx SINE Alu -21 291 1 1768 160 24 103 chr4 96705219 96705674 -105622673 - MSTB1 LTR MaLR -13 419 1 2381 274 105 59 chr4 96705848 96707061 -105621286 + L2 LINE L2 1457 2724 -590 2130 236 61 17 chr4 96707061 96707539 -105620808 + MLT2B3 LTR ERVL 10 508 -46 435 87 0 0 chr4 96707540 96707609 -105620738 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 486 50 12 25 chr4 96707610 96707690 -105620657 + (GAAA)n Simple_repeat Simple_repeat 3 81 0 541 358 57 16 chr4 96707775 96708021 -105620326 + L2 LINE L2 2825 3080 -233 * 812 319 44 7 chr4 96708015 96708288 -105620059 + L2 LINE L2 2423 2705 -609 206 170 21 0 chr4 96708290 96708337 -105620010 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 620 260 77 86 chr4 96708381 96708719 -105619628 - MLT1B LTR MaLR -53 337 3 356 244 63 24 chr4 96708747 96708874 -105619473 + L2 LINE L2 3158 3289 -24 353 336 119 31 chr4 96708883 96709201 -105619146 + L1ME4a LINE L1 5539 5884 -237 22 0 0 0 chr4 96709308 96709330 -105619017 + AT_rich Low_complexity Low_complexity 1 22 0 400 257 113 69 chr4 96709992 96710400 -105617947 + L1ME4a LINE L1 4488 4913 -1233 632 315 90 25 chr4 96710804 96711125 -105617222 + LTR16A LTR ERVL 16 357 -93 319 243 44 132 chr4 96711157 96711429 -105616918 + L1ME4a LINE L1 5637 5884 -237 1517 161 45 14 chr4 96711436 96711727 -105616620 + L1MC1 LINE L1 6026 6325 -8 33 25 0 0 chr4 96711895 96711935 -105616412 + AT_rich Low_complexity Low_complexity 1 40 0 303 71 0 0 chr4 96712147 96712189 -105616158 + (TA)n Simple_repeat Simple_repeat 1 42 0 213 39 0 0 chr4 96712188 96712214 -105616133 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 2231 257 80 21 chr4 96712455 96714626 -105613721 - L1MD3 LINE L1 -12 7983 5582 1031 112 19 25 chr4 96714625 96714786 -105613561 - L1PA13 LINE L1 -36 6127 5968 * 639 249 42 59 chr4 96714895 96715132 -105613215 - L1MD3 LINE L1 -569 5597 5365 364 130 0 0 chr4 96715133 96715187 -105613160 - THE1C LTR MaLR 0 364 311 386 103 31 21 chr4 96715188 96715285 -105613062 + T-rich Low_complexity Low_complexity 2 99 0 26808 30 3 0 chr4 96715289 96719309 -105609038 - L1PA3 LINE L1 -4 6151 2121 2086 94 43 27 chr4 96719309 96719637 -105608710 - THE1C LTR MaLR -42 333 1 839 271 76 28 chr4 96719638 96720100 -105608247 - L1MD3 LINE L1 -788 5358 4896 496 207 63 9 chr4 96720100 96720211 -105608136 + LTR40a LTR ERVL 403 519 0 669 317 96 35 chr4 96720213 96720605 -105607742 - L1MCc LINE L1 -5150 1273 844 3520 142 26 81 chr4 96720605 96721336 -105607011 - LTR8 LTR ERV1 0 691 1 669 317 96 35 chr4 96721336 96721435 -105606912 - L1MCc LINE L1 -5579 844 752 262 312 0 0 chr4 96724851 96724944 -105603403 + MER94 DNA DNA 7 99 -35 252 341 22 11 chr4 96725011 96725102 -105603245 - MIR SINE MIR -124 138 47 24 0 0 0 chr4 96725123 96725147 -105603200 + AT_rich Low_complexity Low_complexity 1 24 0 266 168 67 101 chr4 96725231 96725350 -105602997 + L1ME4a LINE L1 5974 6088 -33 23 33 0 0 chr4 96725419 96725449 -105602898 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 96725655 96725677 -105602670 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr4 96725760 96725793 -105602554 + AT_rich Low_complexity Low_complexity 1 33 0 271 258 21 11 chr4 96726393 96726486 -105601861 + MIR SINE MIR 113 206 -56 23 0 0 0 chr4 96726589 96726612 -105601735 + AT_rich Low_complexity Low_complexity 1 23 0 3222 163 25 2 chr4 96726748 96727301 -105601046 + L1PA6 LINE L1 11 576 -5570 22510 65 5 1 chr4 96727301 96731094 -105597253 + L1PA6 LINE L1 2318 6148 -6 210 250 0 0 chr4 96731307 96731363 -105596984 + GA-rich Low_complexity Low_complexity 1 56 0 4843 45 0 2 chr4 96733631 96734209 -105594138 + MER11D LTR ERVK 1 577 -320 1328 189 75 43 chr4 96734379 96734728 -105593619 + MLT1A1 LTR MaLR 1 360 -5 230 200 0 0 chr4 96734904 96734949 -105593398 - L1MA9 LINE L1 -268 6044 6000 1515 140 14 11 chr4 96734949 96735228 -105593119 + L1MA9 LINE L1 6028 6307 -5 378 0 0 0 chr4 96736459 96736501 -105591846 + (TA)n Simple_repeat Simple_repeat 2 43 0 23 0 0 0 chr4 96738615 96738638 -105589709 + AT_rich Low_complexity Low_complexity 1 23 0 2228 113 3 0 chr4 96739068 96739378 -105588969 - AluSx SINE Alu 0 312 2 23 0 0 0 chr4 96740900 96740923 -105587424 + AT_rich Low_complexity Low_complexity 1 23 0 259 337 109 0 chr4 96740927 96741019 -105587328 - L2 LINE L2 -13 3300 3199 238 260 71 47 chr4 96741059 96741186 -105587161 + MIR SINE MIR 118 247 -15 2171 129 0 0 chr4 96742031 96742333 -105586014 - AluSg SINE Alu -8 302 1 30 45 0 0 chr4 96742431 96742475 -105585872 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr4 96743364 96743393 -105584954 + AT_rich Low_complexity Low_complexity 1 29 0 233 169 46 15 chr4 96743456 96743521 -105584826 + (TA)n Simple_repeat Simple_repeat 1 67 0 3054 140 6 10 chr4 96744137 96744637 -105583710 + L1PA16 LINE L1 5668 6165 -1 572 178 20 46 chr4 96746688 96746840 -105581507 - LTR37B LTR ERV1 -8 460 313 626 198 60 6 chr4 96746971 96747138 -105581209 + L1MB1 LINE L1 6013 6188 -1 183 289 0 0 chr4 96747286 96747331 -105581016 + MER5A DNA MER1_type 143 187 -2 828 272 124 60 chr4 96747731 96748245 -105580102 + MLT1K LTR MaLR 15 561 -27 328 272 212 21 chr4 96749792 96750064 -105578283 - L1M4 LINE L1 -585 5589 5261 509 291 109 33 chr4 96751171 96751381 -105576966 - MIR SINE MIR -34 228 3 210 37 0 0 chr4 96753064 96753091 -105575256 + (T)n Simple_repeat Simple_repeat 1 27 0 278 314 59 0 chr4 96754076 96754178 -105574169 - L2 LINE L2 -5 3308 3201 183 253 212 40 chr4 96754181 96754280 -105574067 + L2 LINE L2 1773 1888 -1426 3014 153 94 0 chr4 96754319 96754870 -105573477 + LTR26 LTR ERV1 1 603 0 1081 257 29 72 chr4 96754919 96755219 -105573128 - MLT1C LTR MaLR 0 467 194 1933 165 3 0 chr4 96755219 96755528 -105572819 + AluSx SINE Alu 1 310 -2 1081 257 29 72 chr4 96755528 96755713 -105572634 - MLT1C LTR MaLR -273 194 3 356 0 23 0 chr4 96756420 96756464 -105571883 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 483 175 10 48 chr4 96756559 96756662 -105571685 - MER20 DNA MER1_type -120 99 1 503 259 121 35 chr4 96756671 96756903 -105571444 - MIR SINE MIR 0 262 11 234 343 98 83 chr4 96757275 96757671 -105570676 + L2 LINE L2 2870 3271 -1 190 321 36 73 chr4 96758140 96758277 -105570070 + MIR3 SINE MIR 14 145 -63 201 74 0 0 chr4 96758957 96758984 -105569363 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 1707 244 84 54 chr4 96759799 96760645 -105567702 - L1ME3A LINE L1 -34 6136 5266 829 244 53 5 chr4 96760645 96760854 -105567493 + MER20 DNA MER1_type 1 219 0 22 56 0 0 chr4 96760869 96760905 -105567442 + AT_rich Low_complexity Low_complexity 1 36 0 238 118 0 0 chr4 96761078 96761112 -105567235 + Charlie5 DNA MER1_type 2590 2623 0 832 271 84 66 chr4 96761112 96761465 -105566882 - L1ME3A LINE L1 -1103 5043 4698 1822 166 3 10 chr4 96761465 96761808 -105566539 - AluJb SINE Alu 0 341 1 832 271 84 66 chr4 96761808 96762797 -105565550 - L1ME3A LINE L1 -1448 4698 3675 4731 212 42 16 chr4 96762818 96763392 -105564955 - L1 LINE L1 -1909 4939 4382 417 123 96 0 chr4 96763392 96763465 -105564882 - MADE1 DNA Mariner 0 80 1 4731 212 42 16 chr4 96763465 96764089 -105564258 - L1 LINE L1 -2466 4382 3709 1001 216 24 68 chr4 96764185 96764493 -105563854 + LTR29 LTR ERV1 137 481 -163 1677 206 60 29 chr4 96764493 96764940 -105563407 - L1 LINE L1 -4338 2511 2051 189 0 0 0 chr4 96764942 96764963 -105563384 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 12162 126 15 3 chr4 96764963 96767726 -105560621 - L1PA10 LINE L1 -21 6147 3358 2072 131 60 20 chr4 96767729 96768079 -105560268 - THE1B LTR MaLR 0 364 1 7256 118 3 0 chr4 96768079 96769090 -105559257 - THE1B-int LTR MaLR 0 1580 567 5174 226 28 16 chr4 96769086 96770370 -105557977 - L1P3 LINE L1 -4735 1140 8 * 28 0 0 0 chr4 96770371 96770399 -105557948 + AT_rich Low_complexity Low_complexity 1 28 0 1882 258 55 56 chr4 96770435 96772430 -105555917 - L1 LINE L1 -4787 2062 10 36 23 0 0 chr4 96772430 96772473 -105555874 + AT_rich Low_complexity Low_complexity 1 43 0 903 245 67 46 chr4 96772538 96772909 -105555438 - L1MEc LINE L1 -4367 2029 1651 2088 173 64 7 chr4 96773202 96773607 -105554740 - MSTA LTR MaLR 0 428 1 5587 52 0 0 chr4 96774078 96774766 -105553581 - L1PA6 LINE L1 -4 6150 5463 23 0 0 0 chr4 96775400 96775423 -105552924 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr4 96775751 96775782 -105552565 + AT_rich Low_complexity Low_complexity 1 31 0 382 343 22 8 chr4 96775847 96775981 -105552366 + L2 LINE L2 3137 3272 0 198 103 0 0 chr4 96779825 96779854 -105548493 + (ATG)n Simple_repeat Simple_repeat 3 31 0 351 290 72 7 chr4 96780664 96780802 -105547545 - MLT1L LTR MaLR -136 479 333 254 279 80 55 chr4 96780886 96781087 -105547260 - MLT1L LTR MaLR -409 206 1 1225 228 67 42 chr4 96781395 96781842 -105546505 + LTR37B LTR ERV1 11 468 0 22 70 0 0 chr4 96782114 96782157 -105546190 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 96783031 96783053 -105545294 + AT_rich Low_complexity Low_complexity 1 22 0 378 263 32 0 chr4 96784176 96784271 -105544076 + MER5A DNA MER1_type 9 106 -83 428 295 37 55 chr4 96784504 96784775 -105543572 - L2 LINE L2 0 3313 3048 330 325 95 30 chr4 96785271 96785471 -105542876 - LTR16A LTR ERVL -1 449 237 775 300 78 43 chr4 96785572 96785919 -105542428 - LTR16B LTR ERVL 0 464 106 3465 56 5 5 chr4 96786395 96786843 -105541504 - LTR7 LTR ERV1 -2 448 1 2523 79 45 13 chr4 96786843 96787223 -105541124 - HERVH LTR ERV1 0 7713 7322 1399 124 18 5 chr4 96787221 96787438 -105540909 - HERVH LTR ERV1 -1894 5819 5600 * 4109 154 9 1 chr4 96787439 96788096 -105540251 - HERVH LTR ERV1 -2564 5149 4488 3343 111 4 8 chr4 96788098 96788602 -105539745 - HERVH LTR ERV1 -3720 3993 3492 855 123 22 0 chr4 96788602 96788740 -105539607 - HERVH LTR ERV1 -4433 3280 3140 * 15812 107 22 22 chr4 96788719 96791275 -105537072 - HERVH LTR ERV1 -4718 2995 483 5001 125 40 0 chr4 96791292 96792099 -105536248 - HERVH LTR ERV1 -6874 839 1 3381 71 0 7 chr4 96792101 96792552 -105535795 - LTR7 LTR ERV1 -2 448 1 278 360 85 24 chr4 96792704 96792915 -105535432 + LTR16C LTR ERVL 266 489 -2 23 33 0 0 chr4 96794094 96794124 -105534223 + AT_rich Low_complexity Low_complexity 1 30 0 2134 132 3 3 chr4 96795095 96795405 -105532942 - AluSg SINE Alu 0 310 1 315 241 152 0 chr4 96796103 96796182 -105532165 + L2 LINE L2 3189 3279 -34 2272 81 0 13 chr4 96796243 96796541 -105531806 + AluSc SINE Alu 1 294 -15 597 236 45 17 chr4 96797405 96797583 -105530764 + L1ME3A LINE L1 5762 5944 -226 * 2395 300 19 28 chr4 96797581 96798324 -105530023 + L1M3b LINE L1 10 745 -5536 361 271 94 68 chr4 96798603 96798795 -105529552 - MIR SINE MIR 0 262 66 2256 123 3 0 chr4 96799307 96799617 -105528730 - AluSx SINE Alu -1 311 1 25 51 0 0 chr4 96800082 96800121 -105528226 + AT_rich Low_complexity Low_complexity 1 39 0 5466 162 33 25 chr4 96800757 96802163 -105526184 - L1MA5 LINE L1 -2 7000 5607 2151 136 16 27 chr4 96802163 96802530 -105525817 - THE1B LTR MaLR -1 363 1 9619 104 57 45 chr4 96802530 96804092 -105524255 - THE1B-int LTR MaLR 0 1580 1 1720 169 66 26 chr4 96804092 96804442 -105523905 - THE1B LTR MaLR 0 364 1 5466 162 33 25 chr4 96804442 96804815 -105523532 - L1MA5 LINE L1 -1394 5608 5192 2783 189 75 56 chr4 96804825 96805722 -105522625 - L1MA5 LINE L1 -2336 4512 3599 1393 228 102 25 chr4 96805712 96805881 -105522466 - L1MA5 LINE L1 -5099 1750 1596 * 2066 144 21 37 chr4 96805881 96806262 -105522085 + THE1C LTR MaLR 1 375 0 1393 228 102 25 chr4 96806262 96806492 -105521855 - L1MA5 LINE L1 -5253 1596 1320 2037 59 66 66 chr4 96807851 96808156 -105520191 + AluY SINE Alu 1 305 -6 253 0 54 0 chr4 96808157 96808194 -105520153 + (TA)n Simple_repeat Simple_repeat 2 40 0 30 45 0 0 chr4 96808518 96808562 -105519785 + AT_rich Low_complexity Low_complexity 1 44 0 2639 283 72 66 chr4 96809197 96809421 -105518926 - L1MCc LINE L1 -4887 1536 1315 7261 37 7 0 chr4 96809421 96810725 -105517622 - L1PA4 LINE L1 -2 6153 4836 2639 283 72 66 chr4 96810725 96812138 -105516209 - L1MCc LINE L1 -5108 1315 19 351 314 19 13 chr4 96812433 96812589 -105515758 + MER103 DNA DNA 9 165 -1 24 0 0 0 chr4 96813195 96813219 -105515128 + AT_rich Low_complexity Low_complexity 1 24 0 439 179 15 30 chr4 96814698 96814832 -105513515 + GA-rich Low_complexity Low_complexity 2 133 0 34 24 0 0 chr4 96816274 96816315 -105512032 + AT_rich Low_complexity Low_complexity 1 41 0 373 275 90 30 chr4 96816539 96816706 -105511641 - MER5B DNA MER1_type 0 178 2 191 203 0 141 chr4 96816834 96816898 -105511449 + L3b LINE CR1 1526 1580 -3 300 91 0 0 chr4 96820760 96820804 -105507543 + (CA)n Simple_repeat Simple_repeat 2 45 0 915 269 129 79 chr4 96821302 96822246 -105506101 - L1M4 LINE L1 -5550 992 2 21 36 0 0 chr4 96823282 96823310 -105505037 + AT_rich Low_complexity Low_complexity 1 28 0 204 40 0 0 chr4 96823834 96823859 -105504488 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 21 0 0 0 chr4 96823990 96824011 -105504336 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 96824186 96824214 -105504133 + AT_rich Low_complexity Low_complexity 1 28 0 321 297 5 38 chr4 96824338 96824523 -105503824 + (TA)n Simple_repeat Simple_repeat 2 180 0 22 35 0 0 chr4 96825218 96825247 -105503100 + AT_rich Low_complexity Low_complexity 1 29 0 22 80 0 0 chr4 96825586 96825636 -105502711 + AT_rich Low_complexity Low_complexity 1 50 0 199 280 19 75 chr4 96826036 96826143 -105502204 + L2 LINE L2 3212 3312 -1 224 233 29 29 chr4 96826411 96826514 -105501833 + (CATATA)n Simple_repeat Simple_repeat 2 104 0 1814 142 63 116 chr4 96826527 96826732 -105501615 - Tigger2a DNA MER2_type -2274 434 220 2089 118 0 0 chr4 96826732 96827019 -105501328 - AluSq SINE Alu -26 287 1 1814 142 63 116 chr4 96827019 96827270 -105501077 - Tigger2a DNA MER2_type -2488 220 2 27 49 0 0 chr4 96827270 96827311 -105501036 + AT_rich Low_complexity Low_complexity 1 41 0 759 290 175 18 chr4 96827596 96828031 -105500316 - MLT1G1 LTR MaLR 0 595 93 1795 133 7 10 chr4 96828039 96828333 -105500014 - L1PB2 LINE L1 -5 6146 5854 2629 103 39 0 chr4 96828333 96828721 -105499626 - L1PB2 LINE L1 -225 5926 5524 1563 174 37 7 chr4 96829507 96829801 -105498546 - AluJb SINE Alu -9 303 1 220 182 0 36 chr4 96830036 96830091 -105498256 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 22 56 0 0 chr4 96830981 96831017 -105497330 + AT_rich Low_complexity Low_complexity 1 36 0 1397 205 7 37 chr4 96831111 96831409 -105496938 - AluJo SINE Alu -23 289 1 46 33 0 0 chr4 96832682 96832742 -105495605 + AT_rich Low_complexity Low_complexity 1 60 0 331 333 35 29 chr4 96832918 96833089 -105495258 - L1ME3A LINE L1 0 6170 5999 265 289 36 48 chr4 96833530 96833696 -105494651 - HAL1b LINE L1 -1075 273 110 3777 159 13 7 chr4 96833802 96834489 -105493858 - L1MB8 LINE L1 0 6414 5724 5915 140 29 4 chr4 96834509 96835480 -105492867 - L1MA5 LINE L1 -1 6299 5296 266 0 29 0 chr4 96835480 96835514 -105492833 + (TTA)n Simple_repeat Simple_repeat 3 37 0 5915 140 29 4 chr4 96835514 96835701 -105492646 - L1MA5 LINE L1 -1004 5296 5115 1036 191 11 48 chr4 96835681 96835954 -105492393 - L1MB8 LINE L1 -659 5757 5495 * 1350 223 140 41 chr4 96835962 96836576 -105491771 - L1MB8 LINE L1 -4930 1454 780 21 36 0 0 chr4 96836797 96836825 -105491522 + AT_rich Low_complexity Low_complexity 1 28 0 231 36 0 0 chr4 96839136 96839164 -105489183 + (CCTCG)n Simple_repeat Simple_repeat 5 32 0 223 191 24 0 chr4 96839632 96839674 -105488673 + (CA)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chr4 96840642 96840663 -105487684 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 96841336 96841357 -105486990 + AT_rich Low_complexity Low_complexity 1 21 0 1353 327 119 31 chr4 96845399 96846366 -105481981 - L2 LINE L2 0 3313 2115 4061 138 22 9 chr4 96846366 96846701 -105481646 + L1PB1 LINE L1 5452 5781 -370 372 43 0 0 chr4 96846701 96846747 -105481600 + (TG)n Simple_repeat Simple_repeat 1 46 0 4061 138 22 9 chr4 96846747 96847099 -105481248 + L1PB1 LINE L1 5781 6148 -3 1353 327 119 31 chr4 96847099 96847568 -105480779 - L2 LINE L2 -1198 2115 1689 1477 164 109 21 chr4 96848141 96848470 -105479877 + MER46B DNA MER2_type 4 236 0 2369 89 3 6 chr4 96849308 96849622 -105478725 + AluSq SINE Alu 1 313 0 32 26 0 0 chr4 96850554 96850593 -105477754 + AT_rich Low_complexity Low_complexity 1 39 0 225 94 0 0 chr4 96851897 96851929 -105476418 + (TA)n Simple_repeat Simple_repeat 2 33 0 1406 158 158 0 chr4 96852127 96852392 -105475955 - AluSx SINE Alu -5 307 1 2112 128 0 10 chr4 96854093 96854397 -105473950 - AluSx SINE Alu -11 301 1 23 33 0 0 chr4 96854581 96854611 -105473736 + AT_rich Low_complexity Low_complexity 1 30 0 242 290 43 87 chr4 96855883 96856090 -105472257 + MIR SINE MIR 59 256 -6 414 337 30 12 chr4 96857323 96857492 -105470855 - MIR SINE MIR 0 262 91 180 0 0 0 chr4 96858071 96858091 -105470256 + (TG)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr4 96858397 96858420 -105469927 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 96859665 96859702 -105468645 + AT_rich Low_complexity Low_complexity 1 37 0 188 289 11 100 chr4 96860357 96860447 -105467900 - L2 LINE L2 -55 3217 3136 279 162 61 0 chr4 96860624 96860723 -105467624 + GA-rich Low_complexity Low_complexity 2 106 0 258 356 59 15 chr4 96860723 96860858 -105467489 - L2 LINE L2 -384 2930 2790 21 0 0 0 chr4 96861435 96861456 -105466891 + AT_rich Low_complexity Low_complexity 1 21 0 237 293 26 52 chr4 96861668 96861784 -105466563 - L2 LINE L2 -4 3309 3197 1461 216 91 6 chr4 96862819 96863181 -105465166 - MSTD LTR MaLR -2 394 2 4172 241 109 49 chr4 96863182 96864433 -105463914 - MSTD-int LTR MaLR 0 1735 409 1219 235 26 11 chr4 96864463 96864735 -105463612 - AluJo SINE Alu -36 276 1 2033 218 0 0 chr4 96864736 96865135 -105463212 - MSTD-int LTR MaLR -1309 426 28 1636 218 18 18 chr4 96865135 96865475 -105462872 - MSTD LTR MaLR -56 340 1 406 257 73 62 chr4 96865527 96865706 -105462641 + MLT1K LTR MaLR 374 554 -34 463 341 62 5 chr4 96866091 96866302 -105462045 + MIR SINE MIR 40 262 0 511 300 90 105 chr4 96867018 96867269 -105461078 + L2 LINE L2 2311 2564 -749 275 111 0 0 chr4 96867269 96867305 -105461042 - U2 snRNA snRNA -152 36 1 511 300 90 105 chr4 96867305 96867758 -105460589 + L2 LINE L2 2564 3048 -265 250 143 0 0 chr4 96868248 96868283 -105460064 - U2 snRNA snRNA -153 35 1 342 358 46 42 chr4 96868308 96868568 -105459779 + L2 LINE L2 2578 2838 -476 189 0 0 0 chr4 96868778 96868799 -105459548 + (T)n Simple_repeat Simple_repeat 1 21 0 259 325 36 12 chr4 96868878 96868961 -105459386 + L2 LINE L2 3139 3223 -49 315 254 60 45 chr4 96869025 96869159 -105459188 - L1ME LINE L1 -287 5834 5699 598 205 16 0 chr4 96869189 96869316 -105459031 - LTR16A1 LTR ERVL -5 452 324 1071 156 84 47 chr4 96869316 96869620 -105458727 - THE1C LTR MaLR 0 428 1 351 320 80 0 chr4 96869620 96869770 -105458577 - LTR16A1 LTR ERVL -129 328 167 374 316 147 9 chr4 96871293 96871511 -105456836 - MIR SINE MIR -12 250 3 27 49 0 0 chr4 96871907 96871948 -105456399 + AT_rich Low_complexity Low_complexity 1 41 0 218 339 113 41 chr4 96872277 96872498 -105455849 + L2 LINE L2 2848 3084 -188 2220 58 34 10 chr4 96873462 96873753 -105454594 + AluY SINE Alu 1 298 -13 362 242 133 8 chr4 96873849 96873969 -105454378 - L2 LINE L2 0 3313 3179 257 296 69 97 chr4 96874858 96875105 -105453242 + MIR SINE MIR 19 258 -4 305 386 109 20 chr4 96875981 96876284 -105452063 - L2 LINE L2 -14 3258 2929 323 335 39 13 chr4 96876574 96876729 -105451618 - MIR SINE MIR -14 248 90 752 300 58 22 chr4 96877572 96877989 -105450358 - MARNA DNA Mariner -9 577 146 21 0 0 0 chr4 96878022 96878043 -105450304 + AT_rich Low_complexity Low_complexity 1 21 0 262 277 0 98 chr4 96878635 96878747 -105449600 + MER5A DNA MER1_type 9 109 -80 1708 153 0 4 chr4 96879356 96879624 -105448723 - AluSx SINE Alu -12 300 34 3415 185 63 8 chr4 96880544 96881014 -105447333 + L1MA7 LINE L1 5508 6035 -256 273 29 0 0 chr4 96881014 96881048 -105447299 + (TGG)n Simple_repeat Simple_repeat 2 35 0 3415 185 63 8 chr4 96881048 96881318 -105447029 + L1MA7 LINE L1 6035 6289 -2 517 263 155 30 chr4 96881339 96881571 -105446776 + MIR SINE MIR 2 262 0 205 260 27 27 chr4 96881688 96881761 -105446586 - MIR SINE MIR -122 140 68 380 220 113 69 chr4 96881907 96882066 -105446281 + MIR SINE MIR 97 262 0 232 303 55 37 chr4 96882075 96882184 -105446163 + MARNA DNA Mariner 102 212 -374 959 207 33 25 chr4 96882190 96882465 -105445882 + L1 LINE L1 4970 5246 -900 650 231 74 20 chr4 96882492 96882834 -105445513 - L1MC4 LINE L1 -384 7658 7082 342 252 141 7 chr4 96883183 96883318 -105445029 - L2 LINE L2 -517 2797 2645 258 283 167 0 chr4 96883471 96883591 -105444756 - L2 LINE L2 -2710 604 465 21 0 0 0 chr4 96883913 96883934 -105444413 + AT_rich Low_complexity Low_complexity 1 21 0 305 312 21 0 chr4 96884171 96884264 -105444083 + L3 LINE CR1 1478 1572 -5 23 33 0 0 chr4 96884683 96884713 -105443634 + AT_rich Low_complexity Low_complexity 1 30 0 12858 148 16 68 chr4 96885495 96885906 -105442441 + Tigger1 DNA MER2_type 1 432 -1986 1451 104 0 5 chr4 96885906 96886107 -105442240 + AluSg SINE Alu 1 200 -110 12858 148 16 68 chr4 96886107 96888244 -105440103 + Tigger1 DNA MER2_type 432 2418 0 21 0 0 0 chr4 96888396 96888417 -105439930 + AT_rich Low_complexity Low_complexity 1 21 0 2271 228 64 3 chr4 96888469 96889048 -105439299 - MER90 LTR ERV1 0 614 1 222 340 0 0 chr4 96889150 96889200 -105439147 + L2 LINE L2 3134 3183 -89 809 290 16 28 chr4 96889255 96889510 -105438837 - MIR SINE MIR 0 262 11 2702 139 19 43 chr4 96889542 96890169 -105438178 + MER4E LTR ERV1 1 766 0 21 57 0 0 chr4 96890714 96890749 -105437598 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr4 96891632 96891656 -105436691 + AT_rich Low_complexity Low_complexity 1 24 0 1339 122 0 5 chr4 96891657 96891853 -105436494 + AluY SINE Alu 94 288 -23 9342 100 6 0 chr4 96891857 96893123 -105435224 - THE1B-int LTR MaLR -307 1273 1 1934 144 69 26 chr4 96893126 96893473 -105434874 - THE1B LTR MaLR -2 362 1 294 268 71 18 chr4 96893584 96893696 -105434651 - MIR3 SINE MIR -2 206 89 21 0 0 0 chr4 96894396 96894417 -105433930 + AT_rich Low_complexity Low_complexity 1 21 0 29 90 0 0 chr4 96894467 96894545 -105433802 + AT_rich Low_complexity Low_complexity 1 78 0 186 289 227 0 chr4 96895884 96895981 -105432366 + MIR SINE MIR 73 191 -71 502 278 68 12 chr4 96896619 96896781 -105431566 - MIR SINE MIR -27 235 65 2531 131 38 21 chr4 96897110 96897531 -105430816 - MSTA LTR MaLR 0 428 1 207 246 0 0 chr4 96897915 96897972 -105430375 + CT-rich Low_complexity Low_complexity 1 57 0 291 122 0 0 chr4 96898376 96898425 -105429922 + (TG)n Simple_repeat Simple_repeat 1 49 0 308 283 10 50 chr4 96898444 96898543 -105429804 + L2 LINE L2 3190 3284 -29 695 31 98 0 chr4 96898693 96898954 -105429393 + (TA)n Simple_repeat Simple_repeat 1 286 0 22 0 0 0 chr4 96899293 96899315 -105429032 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr4 96899461 96899498 -105428849 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr4 96899679 96899706 -105428641 + AT_rich Low_complexity Low_complexity 1 27 0 33 0 0 0 chr4 96899875 96899908 -105428439 + AT_rich Low_complexity Low_complexity 1 33 0 225 186 17 0 chr4 96900116 96900175 -105428172 + L1MC4 LINE L1 6644 6703 -1339 284 311 61 20 chr4 96903164 96903312 -105425035 - MER103 DNA DNA -1 165 12 878 316 40 67 chr4 96903898 96904379 -105423968 + L3 LINE CR1 425 892 -685 257 304 87 22 chr4 96904421 96904605 -105423742 - MIR SINE MIR -1 261 66 542 337 95 22 chr4 96904660 96905019 -105423328 + L3 LINE CR1 997 1381 -196 586 320 30 10 chr4 96905028 96905228 -105423119 + L2 LINE L2 3109 3312 -1 2459 36 0 0 chr4 97005382 97005685 -105322662 - L1P LINE L1 -3478 2668 2366 7646 178 22 3 chr4 97005685 97007988 -105320359 + L1PA11 LINE L1 3839 6173 -1 2708 100 3 0 chr4 97007988 97008374 -105319973 + L1PA13 LINE L1 5769 6158 -5 1147 347 32 18 chr4 97008579 97009144 -105319203 + L2 LINE L2 2741 3313 0 824 190 49 0 chr4 97010952 97011115 -105317232 + MLT1E3 LTR MaLR 454 624 0 212 356 68 48 chr4 97011227 97011373 -105316974 - L2 LINE L2 -1 3271 3123 24 0 0 0 chr4 97012113 97012137 -105316210 + AT_rich Low_complexity Low_complexity 1 24 0 201 204 102 20 chr4 97014211 97014260 -105314087 - MIR SINE MIR -190 72 20 296 291 0 39 chr4 97015686 97015789 -105312558 + MER103 DNA DNA 17 115 -51 199 349 24 80 chr4 97015879 97015937 -105312410 - L2 LINE L2 -178 3094 3034 2124 114 0 3 chr4 97015937 97016234 -105312113 + AluSq SINE Alu 1 296 -17 199 349 24 80 chr4 97016234 97016387 -105311960 - L2 LINE L2 -238 3034 2895 23 0 0 0 chr4 97017036 97017059 -105311288 + AT_rich Low_complexity Low_complexity 1 23 0 1172 164 80 0 chr4 97017396 97017609 -105310738 + MER46A DNA MER2_type 1 230 -6 24 0 0 0 chr4 97017796 97017820 -105310527 + AT_rich Low_complexity Low_complexity 1 24 0 186 351 0 39 chr4 97018123 97018200 -105310147 - L2 LINE L2 -1 3271 3198 221 320 45 83 chr4 97018645 97018801 -105309546 + L2 LINE L2 2561 2710 -604 192 385 10 0 chr4 97019118 97019214 -105309133 + MIR3 SINE MIR 84 180 -28 192 97 0 0 chr4 97019283 97019314 -105309033 + (TA)n Simple_repeat Simple_repeat 1 31 0 45 55 0 0 chr4 97019585 97019658 -105308689 + AT_rich Low_complexity Low_complexity 1 73 0 1146 240 98 7 chr4 97020006 97020463 -105307884 + MLT1F LTR MaLR 2 542 0 21 0 0 0 chr4 97020467 97020488 -105307859 + AT_rich Low_complexity Low_complexity 1 21 0 2033 121 10 3 chr4 97022995 97023292 -105305055 + AluSg SINE Alu 1 299 -11 23 54 0 0 chr4 97023392 97023429 -105304918 + AT_rich Low_complexity Low_complexity 1 37 0 253 312 87 14 chr4 97024477 97024615 -105303732 + L2 LINE L2 1801 1948 -1366 203 314 35 0 chr4 97024870 97024956 -105303391 + L2 LINE L2 2311 2399 -915 284 275 25 12 chr4 97025284 97025364 -105302983 + L2 LINE L2 3192 3272 0 198 340 107 0 chr4 97025438 97025541 -105302806 - MIR SINE MIR -95 167 54 315 0 0 0 chr4 97025655 97025690 -105302657 + (CA)n Simple_repeat Simple_repeat 2 36 0 181 340 160 0 chr4 97025724 97025824 -105302523 + MIR SINE MIR 48 163 -99 1787 181 81 34 chr4 97027895 97028252 -105300095 + MSTA LTR MaLR 1 381 -47 2027 113 31 0 chr4 97028252 97028543 -105299804 + AluSx SINE Alu 1 300 -12 1787 181 81 34 chr4 97028543 97028594 -105299753 + MSTA LTR MaLR 381 428 0 200 340 0 41 chr4 97028634 97028731 -105299616 - L2 LINE L2 -18 3254 3162 296 216 23 23 chr4 97031010 97031098 -105297249 - MER103 DNA DNA -12 154 67 299 270 27 0 chr4 97032250 97032324 -105296023 + MIR3 SINE MIR 81 156 -52 1048 258 110 14 chr4 97032333 97032778 -105295569 - MER20B DNA MER1_type -60 723 236 456 248 30 0 chr4 97032896 97032997 -105295350 + MER63 DNA MER1_type 675 778 -58 198 0 0 0 chr4 97033268 97033290 -105295057 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 267 122 20 20 chr4 97033636 97033685 -105294662 + MIR SINE MIR 62 110 -152 2294 97 11 33 chr4 97034160 97034520 -105293827 - L1PB1 LINE L1 -2 6149 5798 525 194 0 0 chr4 97034652 97034745 -105293602 - FRAM SINE Alu -50 126 34 7380 35 6 0 chr4 97035642 97037068 -105291279 - L1PA4 LINE L1 -3 6152 4722 24 0 0 0 chr4 97037444 97037468 -105290879 + AT_rich Low_complexity Low_complexity 1 24 0 1856 74 0 0 chr4 97037886 97038117 -105290230 - AluY SINE Alu -13 298 68 208 355 56 9 chr4 97038188 97038295 -105290052 - L2 LINE L2 0 3272 3161 209 284 75 67 chr4 97038930 97039064 -105289283 + L3b LINE CR1 1309 1443 -140 414 0 0 0 chr4 97039114 97039160 -105289187 + (CA)n Simple_repeat Simple_repeat 2 47 0 3777 126 168 21 chr4 97040520 97041240 -105287107 + LTR12 LTR ERV1 1 826 0 366 23 0 0 chr4 97043455 97043498 -105284849 + (TATG)n Simple_repeat Simple_repeat 4 46 0 410 215 63 103 chr4 97043800 97043854 -105284493 - MER69 DNA AcHobo -93 2433 2378 1559 152 45 48 chr4 97043854 97044143 -105284204 - AluJo SINE Alu -13 299 12 410 215 63 103 chr4 97044143 97044311 -105284036 - MER69 DNA AcHobo -148 2378 2220 1154 288 108 15 chr4 97044494 97045071 -105283276 - MER69 DNA AcHobo -550 676 7 246 294 87 35 chr4 97045770 97046001 -105282346 - L1MC5 LINE L1 -108 7853 7611 1839 136 7 31 chr4 97046039 97046325 -105282022 - AluSg SINE Alu -31 279 1 250 275 25 0 chr4 97046469 97046549 -105281798 - L1MC5 LINE L1 -577 7384 7303 388 223 141 22 chr4 97046705 97046885 -105281462 - L1MC4 LINE L1 -741 7220 7025 349 363 61 22 chr4 97047152 97047539 -105280808 + L2 LINE L2 2660 3061 -211 181 387 66 19 chr4 97047662 97047768 -105280579 + L2 LINE L2 3182 3292 -21 189 0 0 0 chr4 97048103 97048124 -105280223 + (T)n Simple_repeat Simple_repeat 1 21 0 200 98 0 24 chr4 97048628 97048669 -105279678 + (TA)n Simple_repeat Simple_repeat 2 41 0 271 217 0 0 chr4 97049991 97050037 -105278310 - Tigger5 DNA MER2_type -1 2322 2277 302 186 17 17 chr4 97050041 97050100 -105278247 + Tigger5 DNA MER2_type 2259 2317 -6 225 263 0 0 chr4 97050102 97050159 -105278188 - Tigger5 DNA MER2_type -2244 79 23 246 105 0 0 chr4 97050182 97050220 -105278127 + (TG)n Simple_repeat Simple_repeat 1 38 0 2053 128 3 3 chr4 97050301 97050605 -105277742 + AluSq SINE Alu 1 304 -9 285 185 0 0 chr4 97050765 97050830 -105277517 + CT-rich Low_complexity Low_complexity 3 67 0 464 366 77 38 chr4 97051079 97051817 -105276530 + L2 LINE L2 203 969 -2345 229 239 0 0 chr4 97052143 97052189 -105276158 + MLT1D LTR MaLR 24 69 -436 1073 227 65 93 chr4 97052245 97052708 -105275639 + MLT1D LTR MaLR 56 505 0 350 340 128 47 chr4 97053054 97054026 -105274321 + L2 LINE L2 1708 2757 -557 1743 331 36 26 chr4 97054054 97055058 -105273289 + L2 LINE L2 2283 3312 -1 22 56 0 0 chr4 97055819 97055855 -105272492 + AT_rich Low_complexity Low_complexity 1 36 0 3265 210 64 63 chr4 97055990 97056882 -105271465 + HERVL-B2 LTR ERVL 4762 5654 0 1390 212 105 59 chr4 97056882 97057401 -105270946 + MLT2B2 LTR ERVL 1 508 -12 23 33 0 0 chr4 97057771 97057801 -105270546 + AT_rich Low_complexity Low_complexity 1 30 0 1265 168 86 8 chr4 97058239 97058495 -105269852 - L1MB2 LINE L1 -2 6169 5894 267 302 0 0 chr4 97058770 97058833 -105269514 + polypurine Low_complexity Low_complexity 2 64 0 189 94 0 0 chr4 97059012 97059044 -105269303 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 201 254 16 16 chr4 97059604 97059667 -105268680 + (TGAA)n Simple_repeat Simple_repeat 4 66 0 25 0 0 0 chr4 97060012 97060037 -105268310 + AT_rich Low_complexity Low_complexity 1 25 0 392 311 21 37 chr4 97063158 97063348 -105264999 - L2 LINE L2 -4 3309 3123 2063 179 18 126 chr4 97064543 97065147 -105263200 + L1MB3 LINE L1 5642 6180 -3 477 315 116 0 chr4 97065160 97065376 -105262971 + L2 LINE L2 1721 1961 -1353 428 273 23 45 chr4 97065379 97065487 -105262860 - MER94 DNA DNA -3 131 25 2547 172 5 2 chr4 97065487 97065912 -105262435 + MSTB LTR MaLR 1 426 0 428 273 23 45 chr4 97065912 97065935 -105262412 - MER94 DNA DNA -109 25 3 1979 330 81 26 chr4 97065942 97066074 -105262273 + L2 LINE L2 1963 2086 -1227 1350 201 37 0 chr4 97066074 97066373 -105261974 - L1MA6 LINE L1 0 6300 5991 1979 330 81 26 chr4 97066373 97067515 -105260832 + L2 LINE L2 2086 3312 -1 361 267 138 0 chr4 97067589 97067705 -105260642 - L2 LINE L2 -20 3293 3162 299 327 36 0 chr4 97067723 97067833 -105260514 + L2 LINE L2 2393 2506 -808 183 114 0 0 chr4 97067836 97067871 -105260476 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 734 146 0 0 chr4 97067877 97067987 -105260360 - FRAM SINE Alu -31 145 36 699 315 157 0 chr4 97068003 97068475 -105259872 + L2 LINE L2 2524 3075 -238 226 340 21 21 chr4 97068733 97068827 -105259520 - L2 LINE L2 -5 3267 3174 29 28 0 0 chr4 97069353 97069389 -105258958 + AT_rich Low_complexity Low_complexity 1 36 0 243 330 54 61 chr4 97069389 97069491 -105258856 - L2 LINE L2 -797 2517 2416 270 56 0 0 chr4 97069491 97069527 -105258820 + (CA)n Simple_repeat Simple_repeat 1 36 0 243 330 54 61 chr4 97069527 97069703 -105258644 - L2 LINE L2 -898 2416 2241 225 337 29 41 chr4 97069776 97069948 -105258399 - L2 LINE L2 -1424 1890 1721 2070 130 0 0 chr4 97073944 97074237 -105254110 + AluSg SINE Alu 18 310 0 191 222 0 44 chr4 97075568 97075613 -105252734 + MIR SINE MIR 209 251 -11 2098 135 0 6 chr4 97077028 97077340 -105251007 + AluSx SINE Alu 1 310 -2 25 0 0 0 chr4 97078123 97078148 -105250199 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 97079466 97079488 -105248859 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 97080049 97080077 -105248270 + AT_rich Low_complexity Low_complexity 1 28 0 289 313 39 31 chr4 97080134 97080262 -105248085 - MER94 DNA DNA -4 130 2 189 0 0 0 chr4 97080573 97080594 -105247753 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr4 97080754 97080777 -105247570 + AT_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr4 97081214 97081261 -105247086 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr4 97081928 97081949 -105246398 + AT_rich Low_complexity Low_complexity 1 21 0 247 70 70 0 chr4 97082086 97082129 -105246218 - MADE1 DNA Mariner -34 46 1 21 36 0 0 chr4 97083299 97083327 -105245020 + AT_rich Low_complexity Low_complexity 1 28 0 2165 122 3 0 chr4 97083792 97084096 -105244251 - AluSx SINE Alu -7 305 1 21 0 0 0 chr4 97086637 97086658 -105241689 + AT_rich Low_complexity Low_complexity 1 21 0 306 50 0 0 chr4 97086736 97086776 -105241571 + (CA)n Simple_repeat Simple_repeat 2 41 0 405 0 0 0 chr4 97087463 97087508 -105240839 + (TG)n Simple_repeat Simple_repeat 2 46 0 28 29 0 0 chr4 97088659 97088694 -105239653 + AT_rich Low_complexity Low_complexity 1 35 0 2323 75 0 10 chr4 97088761 97089067 -105239280 + AluY SINE Alu 1 303 -8 1922 131 0 10 chr4 97089184 97089474 -105238873 + AluSx SINE Alu 1 287 -25 217 395 73 0 chr4 97089698 97089807 -105238540 - MIR SINE MIR -140 122 6 1815 204 0 16 chr4 97091405 97091770 -105236577 + MLT1A1 LTR MaLR 7 502 -3 22 0 0 0 chr4 97092361 97092383 -105235964 + AT_rich Low_complexity Low_complexity 1 22 0 313 291 13 95 chr4 97094359 97094517 -105233830 - MIR3 SINE MIR -48 160 16 302 306 0 41 chr4 97094699 97094820 -105233527 + MIR3 SINE MIR 86 201 -7 26 30 0 0 chr4 97095785 97095818 -105232529 + AT_rich Low_complexity Low_complexity 1 33 0 378 61 0 0 chr4 97096585 97096634 -105231713 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr4 97097116 97097137 -105231210 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr4 97097454 97097479 -105230868 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 753 139 0 0 chr4 97097482 97097590 -105230757 - THE1C LTR MaLR -49 326 219 410 287 55 61 chr4 97098909 97099073 -105229274 + MIR SINE MIR 18 180 -82 201 74 0 0 chr4 97099386 97099413 -105228934 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr4 97100084 97100105 -105228242 + AT_rich Low_complexity Low_complexity 1 21 0 1861 136 0 11 chr4 97100108 97100384 -105227963 + AluSc SINE Alu 1 278 -31 204 40 0 0 chr4 97100384 97100409 -105227938 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 405 0 0 0 chr4 97100408 97100453 -105227894 + (TA)n Simple_repeat Simple_repeat 1 45 0 1861 136 0 11 chr4 97100409 97100462 -105227885 + AluSc SINE Alu 278 283 -26 2193 213 25 93 chr4 97100925 97101537 -105226810 - L1P3 LINE L1 -4743 1132 654 11543 150 15 21 chr4 97101537 97103634 -105224713 + L1P LINE L1 2627 4711 -1435 340 266 117 13 chr4 97103639 97103793 -105224554 + MER20B DNA MER1_type 372 541 -242 4218 38 2 4 chr4 97103971 97104502 -105223845 + L1P LINE L1 3174 3703 -2443 * 12560 215 49 31 chr4 97104500 97108774 -105219573 - L1PA12 LINE L1 -2292 5292 139 547 333 43 16 chr4 97108775 97109078 -105219269 + L2 LINE L2 2132 2442 -872 305 392 66 30 chr4 97109297 97109629 -105218718 - L2 LINE L2 -2628 686 343 699 12 0 0 chr4 97109945 97110025 -105218322 + (TTC)n Simple_repeat Simple_repeat 2 81 0 2805 42 0 0 chr4 97110026 97110362 -105217985 - L1PA3 LINE L1 -5 6150 5815 438 172 69 11 chr4 97110507 97110594 -105217753 + AluJ/FLAM SINE Alu 6 97 -215 417 20 0 0 chr4 97110620 97110670 -105217677 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 303 333 49 28 chr4 97111437 97111581 -105216766 + MIR SINE MIR 1 147 -115 355 126 53 0 chr4 97111821 97111916 -105216431 + (TA)n Simple_repeat Simple_repeat 1 100 0 189 121 0 0 chr4 97111942 97111975 -105216372 + (TA)n Simple_repeat Simple_repeat 1 33 0 205 228 134 55 chr4 97113831 97113958 -105214389 + MIR SINE MIR 81 217 -45 31 26 0 0 chr4 97114092 97114130 -105214217 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 71 chr4 97114473 97114515 -105213832 + AT_rich Low_complexity Low_complexity 1 39 0 31 26 0 0 chr4 97114543 97114581 -105213766 + AT_rich Low_complexity Low_complexity 1 38 0 1311 192 0 80 chr4 97114589 97114891 -105213456 + AluJb SINE Alu 5 282 -30 260 233 19 4 chr4 97115040 97115155 -105213192 + MIR SINE MIR 74 229 -33 262 138 35 0 chr4 97115560 97115618 -105212729 + (TA)n Simple_repeat Simple_repeat 1 60 0 230 299 37 0 chr4 97115645 97115752 -105212595 + (TA)n Simple_repeat Simple_repeat 1 111 0 240 269 39 0 chr4 97115756 97115860 -105212487 - L1MC4 LINE L1 -1339 6703 6596 207 231 0 0 chr4 97116596 97116635 -105211712 + (TA)n Simple_repeat Simple_repeat 2 40 0 247 349 54 24 chr4 97116704 97116870 -105211477 + MIR3 SINE MIR 17 187 -21 222 191 0 0 chr4 97117038 97117080 -105211267 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr4 97118161 97118182 -105210165 + AT_rich Low_complexity Low_complexity 1 21 0 450 36 0 0 chr4 97118260 97118316 -105210031 + (CA)n Simple_repeat Simple_repeat 2 57 0 387 0 0 0 chr4 97119003 97119046 -105209301 + (TG)n Simple_repeat Simple_repeat 2 44 0 28 29 0 0 chr4 97120197 97120232 -105208115 + AT_rich Low_complexity Low_complexity 1 35 0 2361 71 0 10 chr4 97120299 97120608 -105207739 + AluY SINE Alu 1 306 -5 1948 128 0 10 chr4 97120725 97121015 -105207332 + AluSx SINE Alu 1 287 -25 217 395 73 0 chr4 97121239 97121348 -105206999 - MIR SINE MIR -140 122 6 1815 204 0 16 chr4 97122946 97123311 -105205036 + MLT1A1 LTR MaLR 7 502 -3 22 0 0 0 chr4 97123902 97123924 -105204423 + AT_rich Low_complexity Low_complexity 1 22 0 313 291 13 95 chr4 97125900 97126058 -105202289 - MIR3 SINE MIR -48 160 16 302 306 0 41 chr4 97126240 97126361 -105201986 + MIR3 SINE MIR 86 201 -7 26 30 0 0 chr4 97127326 97127359 -105200988 + AT_rich Low_complexity Low_complexity 1 33 0 414 57 0 0 chr4 97128126 97128179 -105200168 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 21 0 0 0 chr4 97128661 97128682 -105199665 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr4 97128999 97129024 -105199323 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 753 139 0 0 chr4 97129027 97129135 -105199212 - THE1C LTR MaLR -49 326 219 410 287 55 61 chr4 97130454 97130618 -105197729 + MIR SINE MIR 18 180 -82 201 74 0 0 chr4 97130931 97130958 -105197389 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr4 97131629 97131650 -105196697 + AT_rich Low_complexity Low_complexity 1 21 0 1861 136 0 11 chr4 97131653 97131929 -105196418 + AluSc SINE Alu 1 278 -31 222 37 0 0 chr4 97131929 97131956 -105196391 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 369 0 0 0 chr4 97131955 97131996 -105196351 + (TA)n Simple_repeat Simple_repeat 2 42 0 1861 136 0 11 chr4 97131956 97132005 -105196342 + AluSc SINE Alu 278 283 -26 2193 213 25 93 chr4 97132468 97133080 -105195267 - L1P3 LINE L1 -4743 1132 654 14725 149 20 10 chr4 97133080 97136599 -105191748 + L1PA10 LINE L1 2627 6157 -11 1897 154 23 47 chr4 97136726 97137110 -105191237 + THE1C LTR MaLR 1 375 0 391 285 48 42 chr4 97138118 97138283 -105190064 - MIR SINE MIR 0 262 97 950 47 94 0 chr4 97138996 97139123 -105189224 + MER85 DNA T2_type 1 139 0 21 0 0 0 chr4 97139139 97139160 -105189187 + AT_rich Low_complexity Low_complexity 1 21 0 194 305 12 61 chr4 97140780 97140862 -105187485 - L2 LINE L2 0 3313 3236 809 279 130 12 chr4 97141181 97141511 -105186836 - L2 LINE L2 -1 3312 2944 31 0 0 0 chr4 97141519 97141550 -105186797 + AT_rich Low_complexity Low_complexity 1 31 0 379 277 195 44 chr4 97141918 97142236 -105186111 + MLT1J LTR MaLR 38 403 -108 212 224 41 0 chr4 97142436 97142485 -105185862 + CT-rich Low_complexity Low_complexity 4 54 0 1134 258 121 7 chr4 97142487 97142933 -105185414 - L1MB7 LINE L1 -14 6668 6172 447 202 0 0 chr4 97142933 97143032 -105185315 + (TG)n Simple_repeat Simple_repeat 2 100 0 6386 263 110 26 chr4 97143032 97143071 -105185276 - L1MB7 LINE L1 -486 6190 6156 1325 209 32 60 chr4 97143071 97143472 -105184875 - MLT1B LTR MaLR 0 390 1 6386 263 110 26 chr4 97143472 97145810 -105182537 - L1MB7 LINE L1 -520 6156 4017 1965 157 21 8 chr4 97145810 97146186 -105182161 - L1MA5A LINE L1 -4 6293 5913 6386 263 110 26 chr4 97146186 97146914 -105181433 - L1MB7 LINE L1 -2659 4017 3352 898 232 35 123 chr4 97146914 97147337 -105181010 - MLT1B LTR MaLR -4 386 1 6386 263 110 26 chr4 97147337 97148486 -105179861 - L1MB7 LINE L1 -3324 3352 1705 219 93 23 23 chr4 97148518 97148561 -105179786 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 1311 148 112 59 chr4 97148819 97149124 -105179223 - L1MA5A LINE L1 -12 6783 6463 1727 174 57 13 chr4 97149124 97149509 -105178838 - L1PA8 LINE L1 -9 6163 5762 5110 224 47 40 chr4 97149545 97149767 -105178580 - L1MA5A LINE L1 -743 5901 5682 180 0 0 0 chr4 97149767 97149787 -105178560 + (TTG)n Simple_repeat Simple_repeat 1 20 0 5110 224 47 40 chr4 97149787 97151404 -105176943 - L1MA5A LINE L1 -962 5682 498 267 238 53 102 chr4 97151583 97151789 -105176558 - L1MB7 LINE L1 -6335 207 12 1511 49 0 0 chr4 97152659 97152864 -105175483 + L1PA4 LINE L1 5953 6157 0 987 128 34 0 chr4 97152955 97153104 -105175243 - L1PA11 LINE L1 -4 6170 6017 613 207 36 21 chr4 97153434 97153574 -105174773 + FRAM SINE Alu 12 153 -23 238 182 148 68 chr4 97154671 97154759 -105173588 + MIR SINE MIR 86 180 -82 31 26 0 0 chr4 97155035 97155073 -105173274 + AT_rich Low_complexity Low_complexity 1 38 0 664 271 89 4 chr4 97155998 97156234 -105172113 - MIR SINE MIR -1 261 6 440 323 18 18 chr4 97157207 97157374 -105170973 - MIR3 SINE MIR -10 198 32 670 313 53 13 chr4 97157427 97157654 -105170693 + MIR SINE MIR 1 236 -26 332 252 42 17 chr4 97157899 97158018 -105170329 + L1MEd LINE L1 11 132 -5987 227 239 42 0 chr4 97158145 97158216 -105170131 - L1MB1 LINE L1 -4 6164 6091 490 319 78 49 chr4 97158392 97159067 -105169280 + L1MEd LINE L1 404 1098 -5021 2219 218 118 44 chr4 97159260 97160107 -105168240 + MER63C DNA MER1_type 1 910 -20 380 310 53 90 chr4 97160124 97160258 -105168089 - HAL1 LINE L1 -2007 500 363 267 79 0 0 chr4 97160258 97160296 -105168051 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 380 310 53 90 chr4 97160296 97160309 -105168038 - HAL1 LINE L1 -2144 363 351 1825 94 8 4 chr4 97160309 97160564 -105167783 - AluSx SINE Alu -56 256 1 380 310 53 90 chr4 97160564 97160828 -105167519 - HAL1 LINE L1 -2156 351 103 23 33 0 0 chr4 97161599 97161629 -105166718 + AT_rich Low_complexity Low_complexity 1 30 0 235 120 76 33 chr4 97161767 97161859 -105166488 + (TTATA)n Simple_repeat Simple_repeat 1 96 0 26 30 0 0 chr4 97163334 97163367 -105164980 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr4 97163452 97163478 -105164869 + AT_rich Low_complexity Low_complexity 1 26 0 1611 194 10 0 chr4 97164261 97164560 -105163787 + AluSx SINE Alu 3 304 -8 400 125 0 62 chr4 97164560 97164688 -105163659 + (GGAA)n Simple_repeat Simple_repeat 1 120 0 1107 152 57 33 chr4 97165921 97166132 -105162215 + MER30 DNA MER1_type 1 216 -14 228 67 0 0 chr4 97166639 97166669 -105161678 + (T)n Simple_repeat Simple_repeat 1 30 0 372 88 0 0 chr4 97166758 97166815 -105161532 + (GA)n Simple_repeat Simple_repeat 2 58 0 35 92 0 0 chr4 97168907 97169005 -105159342 + AT_rich Low_complexity Low_complexity 1 98 0 328 296 59 7 chr4 97170185 97170320 -105158027 + MIR SINE MIR 21 162 -100 252 123 86 0 chr4 97170332 97170413 -105157934 + (TA)n Simple_repeat Simple_repeat 1 88 0 41 21 0 0 chr4 97170658 97170706 -105157641 + AT_rich Low_complexity Low_complexity 1 48 0 270 373 103 0 chr4 97171399 97171525 -105156822 + MIR SINE MIR 48 186 -76 612 258 53 0 chr4 97171546 97171697 -105156650 + L1PB4 LINE L1 5996 6154 -2 220 246 35 0 chr4 97171725 97171782 -105156565 + MIR SINE MIR 176 234 -28 209 309 21 43 chr4 97172627 97172721 -105155626 + MIR3 SINE MIR 110 201 -7 262 258 0 16 chr4 97172890 97172952 -105155395 + GA-rich Low_complexity Low_complexity 4 64 0 25 51 0 0 chr4 97173135 97173174 -105155173 + AT_rich Low_complexity Low_complexity 1 39 0 576 186 144 66 chr4 97173211 97173378 -105154969 - AluJo SINE Alu -23 289 110 434 201 108 36 chr4 97173427 97173566 -105154781 + L1MA9 LINE L1 5980 6128 -184 4506 170 76 29 chr4 97173581 97175221 -105153126 - L1PA16 LINE L1 -12 6154 4439 1417 203 25 3 chr4 97175217 97175532 -105152815 + L1PA16 LINE L1 4111 4432 -1714 * 22 0 0 30 chr4 97175534 97175549 -105152798 + AT_rich Low_complexity Low_complexity 1 15 -17 515 222 51 8 chr4 97175549 97175666 -105152681 - AluJo SINE Alu -180 122 1 22 0 0 30 chr4 97175666 97175683 -105152664 + AT_rich Low_complexity Low_complexity 15 32 0 310 246 78 88 chr4 97176877 97177288 -105151059 - L1MC5 LINE L1 -215 7746 7340 564 263 90 53 chr4 97177403 97178251 -105150096 - L1ME2 LINE L1 -9 6155 5255 246 323 58 26 chr4 97178306 97178461 -105149886 - L1ME2 LINE L1 -974 5172 5013 204 97 0 0 chr4 97178792 97178823 -105149524 + (T)n Simple_repeat Simple_repeat 1 31 0 488 302 66 11 chr4 97179021 97179203 -105149144 + MIR SINE MIR 71 262 0 302 341 76 8 chr4 97180377 97180509 -105147838 - L2 LINE L2 -11 3302 3162 26 82 0 0 chr4 97180778 97180839 -105147508 + AT_rich Low_complexity Low_complexity 1 61 0 1955 208 81 9 chr4 97181173 97181606 -105146741 - MLT2B1 LTR ERVL -56 464 1 1161 180 28 0 chr4 97181614 97181831 -105146516 - ERVL-B1 LTR ERVL -23 5741 5519 280 245 29 78 chr4 97181832 97181934 -105146413 - Tigger5 DNA MER2_type -1 2322 2226 * 387 149 45 0 chr4 97181910 97181977 -105146370 + Tigger5 DNA MER2_type 2251 2320 -3 * 493 190 0 0 chr4 97181977 97182055 -105146292 - Tigger5 DNA MER2_type -2245 78 1 12386 166 16 3 chr4 97182061 97184133 -105144214 - ERVL-B1 LTR ERVL -250 5514 3417 1375 138 5 0 chr4 97184146 97184356 -105143991 - MLT2B2 LTR ERVL -304 211 1 1264 215 39 28 chr4 97184379 97184663 -105143684 + AluJb SINE Alu 1 287 -25 527 153 0 63 chr4 97184674 97184785 -105143562 + AluSg SINE Alu 1 104 -206 200 74 0 0 chr4 97184792 97184819 -105143528 + (TA)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chr4 97184819 97184845 -105143502 + AT_rich Low_complexity Low_complexity 1 26 0 306 264 69 0 chr4 97184845 97184932 -105143415 + L1MC4 LINE L1 6613 6705 -1337 350 145 0 0 chr4 97184932 97185001 -105143346 + (TA)n Simple_repeat Simple_repeat 1 69 0 1845 107 46 11 chr4 97185002 97185283 -105143064 - AluSg1 SINE Alu -18 291 1 252 77 0 0 chr4 97185306 97185345 -105143002 + (TG)n Simple_repeat Simple_repeat 2 40 0 1332 218 92 17 chr4 97186067 97186415 -105141932 - MLT1A2 LTR MaLR 0 374 1 5542 190 61 26 chr4 97186518 97188062 -105140285 - L1M1 LINE L1 -745 5401 3940 938 176 19 46 chr4 97188062 97188278 -105140069 - L1M2 LINE L1 -675 5616 5407 26 0 0 0 chr4 97189525 97189551 -105138796 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr4 97189703 97189741 -105138606 + AT_rich Low_complexity Low_complexity 1 38 0 234 156 0 0 chr4 97190764 97190809 -105137538 - LTR66 LTR ERVL -172 438 394 187 154 19 19 chr4 97190823 97190875 -105137472 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 26 0 0 0 chr4 97194982 97195008 -105133339 + AT_rich Low_complexity Low_complexity 1 26 0 272 289 44 11 chr4 97195551 97195611 -105132736 - L1M1 LINE L1 -2932 3214 3157 1671 186 26 13 chr4 97195611 97195997 -105132350 - L1MB3 LINE L1 -8 6175 5785 272 289 44 11 chr4 97195997 97196116 -105132231 - L1M1 LINE L1 -2989 3157 3029 275 151 0 0 chr4 97196141 97196194 -105132153 - L1M4c LINE L1 -5300 1084 1032 7727 215 43 21 chr4 97196207 97199274 -105129073 - L1M4 LINE L1 -3140 3242 5 188 209 104 15 chr4 97202495 97202562 -105125785 + MIR SINE MIR 135 207 -55 653 301 96 25 chr4 97202642 97202881 -105125466 - MIR SINE MIR -2 260 5 2028 120 150 8 chr4 97202993 97203367 -105124980 - MSTA LTR MaLR 0 428 2 25 31 0 0 chr4 97204017 97204049 -105124298 + AT_rich Low_complexity Low_complexity 1 32 0 808 188 81 69 chr4 97204074 97204394 -105123953 - L1MC5 LINE L1 -25 7936 7613 782 238 24 17 chr4 97204415 97204672 -105123675 - L1MEc LINE L1 -3826 2399 2167 1707 210 44 5 chr4 97204674 97205083 -105123264 - L1MA4 LINE L1 -4 6296 5872 1154 268 69 84 chr4 97205153 97205740 -105122607 - L1MEc LINE L1 -4306 2090 1496 1761 53 0 9 chr4 97205740 97205968 -105122379 + L1PA5 LINE L1 5928 6153 -1 1154 268 69 84 chr4 97205968 97206512 -105121835 - L1MEc LINE L1 -4900 1496 983 2177 87 0 30 chr4 97206512 97206810 -105121537 - AluSg1 SINE Alu -20 289 1 1154 268 69 84 chr4 97206810 97207129 -105121218 - L1MEc LINE L1 -5413 983 661 2270 93 0 13 chr4 97207533 97207835 -105120512 - AluY SINE Alu -13 298 1 2333 74 3 3 chr4 97208152 97208461 -105119886 - AluY SINE Alu -2 309 1 3033 171 36 2 chr4 97208693 97209282 -105119065 + L1MB3 LINE L1 5574 6182 -1 865 326 75 34 chr4 97209459 97210381 -105117966 + L2 LINE L2 2277 3311 -2 291 348 25 69 chr4 97210718 97210922 -105117425 - MIR SINE MIR -10 252 58 778 244 18 14 chr4 97213127 97213348 -105114999 + L1ME1 LINE L1 5889 6110 -56 * 1193 42 0 0 chr4 97213346 97213490 -105114857 - L1PA4 LINE L1 -210 5945 5802 1577 51 5 0 chr4 97213490 97213681 -105114666 + L1PA4 LINE L1 5956 6152 -3 251 284 137 20 chr4 97214232 97214334 -105114013 + MLT1L LTR MaLR 46 159 -456 310 221 14 40 chr4 97214334 97214460 -105113887 + MER5A DNA MER1_type 5 189 0 415 340 50 14 chr4 97214615 97214664 -105113683 + MLT1L LTR MaLR 322 368 -247 297 0 0 0 chr4 97214664 97214697 -105113650 + (CA)n Simple_repeat Simple_repeat 1 33 0 415 340 50 14 chr4 97214697 97214929 -105113418 + MLT1L LTR MaLR 368 613 -2 2211 96 0 0 chr4 97214999 97215292 -105113055 + AluY SINE Alu 1 293 -18 305 291 99 13 chr4 97215519 97215670 -105112677 + L1MC5 LINE L1 7772 7935 -26 25 31 0 0 chr4 97216021 97216053 -105112294 + AT_rich Low_complexity Low_complexity 1 32 0 24 85 0 0 chr4 97217091 97217150 -105111197 + AT_rich Low_complexity Low_complexity 1 59 0 229 279 93 23 chr4 97217375 97217461 -105110886 - L2 LINE L2 -210 3062 2971 29 0 0 0 chr4 97218294 97218323 -105110024 + AT_rich Low_complexity Low_complexity 1 29 0 45 55 0 0 chr4 97218666 97218739 -105109608 + AT_rich Low_complexity Low_complexity 1 73 0 7651 149 50 32 chr4 97219338 97219529 -105108818 - Tigger1 DNA MER2_type -10 2408 2222 2183 92 3 0 chr4 97219529 97219821 -105108526 + AluY SINE Alu 1 293 -18 7651 149 50 32 chr4 97219821 97220018 -105108329 - Tigger1 DNA MER2_type -196 2222 2030 2274 106 0 0 chr4 97220018 97220330 -105108017 - AluSq SINE Alu -1 312 1 7651 149 50 32 chr4 97220330 97221405 -105106942 - Tigger1 DNA MER2_type -388 2030 918 1601 166 102 19 chr4 97221405 97221718 -105106629 + MER1B DNA MER1_type 1 339 0 4871 164 24 29 chr4 97221727 97222652 -105105695 - Tigger1 DNA MER2_type -1498 920 1 24 0 0 0 chr4 97223190 97223214 -105105133 + AT_rich Low_complexity Low_complexity 1 24 0 256 233 68 0 chr4 97223311 97223384 -105104963 - LTR33 LTR ERVL -21 500 423 181 182 68 0 chr4 97223610 97223654 -105104693 + MER5A DNA MER1_type 101 147 -42 22 35 0 0 chr4 97224322 97224351 -105103996 + AT_rich Low_complexity Low_complexity 1 29 0 2145 133 7 0 chr4 97224722 97225031 -105103316 + AluSx SINE Alu 2 312 0 23 33 0 0 chr4 97225049 97225079 -105103268 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 97225264 97225285 -105103062 + AT_rich Low_complexity Low_complexity 1 21 0 249 250 19 58 chr4 97225518 97225622 -105102725 - MIR SINE MIR -65 197 98 198 337 23 12 chr4 97226407 97226493 -105101854 - MIR SINE MIR -165 97 11 1889 162 3 0 chr4 97226949 97227246 -105101101 - AluJb SINE Alu -14 298 1 29 0 0 0 chr4 97227248 97227277 -105101070 + AT_rich Low_complexity Low_complexity 1 29 0 186 279 33 16 chr4 97230340 97230401 -105097946 + MIR SINE MIR 105 166 -96 22 56 0 0 chr4 97230434 97230470 -105097877 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr4 97230663 97230696 -105097651 + AT_rich Low_complexity Low_complexity 1 33 0 219 296 21 56 chr4 97231327 97231460 -105096887 + MIR SINE MIR 14 146 -62 2345 67 0 7 chr4 97232691 97232991 -105095356 + AluY SINE Alu 1 298 -13 524 268 113 24 chr4 97233062 97233230 -105095117 + MIR SINE MIR 64 246 -16 23 0 0 0 chr4 97233378 97233401 -105094946 + AT_rich Low_complexity Low_complexity 1 23 0 208 203 54 14 chr4 97234634 97234708 -105093639 + (TATAG)n Simple_repeat Simple_repeat 3 79 0 201 390 62 37 chr4 97234728 97235000 -105093347 - L3 LINE CR1 -1297 280 2 380 329 136 9 chr4 97235474 97235598 -105092749 + MIR SINE MIR 20 127 -135 252 0 0 0 chr4 97235598 97235626 -105092721 + (TA)n Simple_repeat Simple_repeat 1 28 0 380 329 136 9 chr4 97235626 97235714 -105092633 + MIR SINE MIR 127 259 -3 2270 62 0 10 chr4 97235974 97236262 -105092085 + AluY SINE Alu 1 285 -26 180 0 0 0 chr4 97236682 97236702 -105091645 + (TC)n Simple_repeat Simple_repeat 1 20 0 195 42 0 0 chr4 97236821 97236845 -105091502 + (TCCC)n Simple_repeat Simple_repeat 4 27 0 322 328 76 0 chr4 97237392 97237511 -105090836 - L2 LINE L2 -2 3311 3184 1272 269 154 27 chr4 97238575 97239251 -105089096 + MER20B DNA MER1_type 2 763 -20 253 353 60 0 chr4 97239484 97239600 -105088747 - L2 LINE L2 -13 3259 3137 250 322 11 0 chr4 97240431 97240518 -105087829 - MER5C DNA MER1_type -236 88 1 * 376 254 55 0 chr4 97240518 97240621 -105087726 + MIR SINE MIR 30 138 -124 1170 159 48 0 chr4 97240781 97240988 -105087359 + AluSp SINE Alu 83 299 -14 547 265 113 25 chr4 97241030 97241234 -105087113 + MLT1J LTR MaLR 266 487 -24 205 365 47 0 chr4 97241356 97241441 -105086906 - L2 LINE L2 0 3272 3184 186 43 0 0 chr4 97241644 97241667 -105086680 + (TA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr4 97242064 97242086 -105086261 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr4 97243040 97243081 -105085266 + AT_rich Low_complexity Low_complexity 1 41 0 941 266 95 50 chr4 97243352 97243675 -105084672 - MLT1E2 LTR MaLR -111 515 165 1962 162 0 0 chr4 97243675 97243971 -105084376 + AluJb SINE Alu 1 296 -16 941 266 95 50 chr4 97243971 97244090 -105084257 - MLT1E2 LTR MaLR -461 165 53 21 36 0 0 chr4 97244389 97244417 -105083930 + AT_rich Low_complexity Low_complexity 1 28 0 1531 43 0 0 chr4 97245051 97245239 -105083108 - L1PA4 LINE L1 -1 6154 5967 468 77 0 0 chr4 97245506 97245571 -105082776 + (TA)n Simple_repeat Simple_repeat 2 66 0 2264 139 31 17 chr4 97245605 97245964 -105082383 - THE1B LTR MaLR 0 364 1 10834 112 9 6 chr4 97245964 97247539 -105080808 - THE1B-int LTR MaLR 0 1580 1 1931 153 54 20 chr4 97247539 97247891 -105080456 - THE1B LTR MaLR 0 364 1 192 375 42 0 chr4 97249090 97249162 -105079185 + L2 LINE L2 3236 3310 -3 22 70 0 0 chr4 97250448 97250491 -105077856 + AT_rich Low_complexity Low_complexity 1 43 0 28 29 0 0 chr4 97250500 97250535 -105077812 + AT_rich Low_complexity Low_complexity 1 35 0 1460 184 47 30 chr4 97250537 97250836 -105077511 + AluJo SINE Alu 1 304 -8 1903 156 3 3 chr4 97251044 97251339 -105077008 - AluSx SINE Alu -17 295 1 198 0 0 0 chr4 97252585 97252607 -105075740 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2656 176 31 16 chr4 97252839 97253386 -105074961 + L1MB3 LINE L1 5626 6180 -3 609 274 20 7 chr4 97256696 97256849 -105071498 + MIR SINE MIR 66 220 -42 1742 157 11 14 chr4 97257071 97257358 -105070989 + AluSx SINE Alu 1 286 -26 955 220 11 5 chr4 97258327 97258513 -105069834 - Tigger3(Golem) DNA MER2_type -2841 188 2 21 0 0 0 chr4 97259355 97259376 -105068971 + AT_rich Low_complexity Low_complexity 1 21 0 198 216 196 41 chr4 97259814 97259911 -105068436 - MIR SINE MIR -31 231 120 1244 217 152 60 chr4 97260292 97260739 -105067608 - MLT1F1 LTR MaLR -11 556 69 213 39 0 0 chr4 97261004 97261030 -105067317 + (TTTTTA)n Simple_repeat Simple_repeat 5 30 0 201 74 0 0 chr4 97263284 97263311 -105065036 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 25 31 0 0 chr4 97264306 97264338 -105064009 + AT_rich Low_complexity Low_complexity 1 32 0 248 289 79 44 chr4 97264399 97264513 -105063834 - L2 LINE L2 0 3272 3155 258 81 0 0 chr4 97264767 97264804 -105063543 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 187 212 0 0 chr4 97264961 97264994 -105063353 + L2 LINE L2 3213 3245 -27 23 108 0 0 chr4 97266207 97266300 -105062047 + AT_rich Low_complexity Low_complexity 1 93 0 1497 198 29 19 chr4 97266327 97266635 -105061712 - AluJo SINE Alu -1 311 1 1610 199 7 3 chr4 97266823 97267125 -105061222 - AluJb SINE Alu -4 308 6 1636 191 36 6 chr4 97267252 97267581 -105060766 - MER44D DNA MER2_type 0 609 1 21 0 0 0 chr4 97267934 97267955 -105060392 + AT_rich Low_complexity Low_complexity 1 21 0 1647 253 38 26 chr4 97268024 97268522 -105059825 + MLT1D LTR MaLR 2 505 0 1123 102 25 20 chr4 97270140 97270337 -105058010 - L1P2 LINE L1 -665 5490 5293 1217 174 32 84 chr4 97270695 97271006 -105057341 - AluJo SINE Alu -4 308 14 818 20 10 0 chr4 97272724 97272824 -105055523 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 1599 144 37 26 chr4 97272824 97273095 -105055252 - AluSx SINE Alu -38 274 1 520 327 54 22 chr4 97273128 97273351 -105054996 + MIR SINE MIR 2 231 -31 1777 181 0 0 chr4 97275046 97275334 -105053013 + AluJb SINE Alu 1 288 -24 27 0 0 0 chr4 97275586 97275613 -105052734 + AT_rich Low_complexity Low_complexity 1 27 0 2275 92 14 0 chr4 97276263 97276558 -105051789 + AluSg SINE Alu 1 299 -11 245 302 16 0 chr4 97278763 97278826 -105049521 + MIR SINE MIR 57 120 -88 25 51 0 0 chr4 97279257 97279296 -105049051 + AT_rich Low_complexity Low_complexity 1 39 0 1867 125 11 7 chr4 97280684 97281002 -105047345 - AluSx SINE Alu 0 329 11 189 0 0 0 chr4 97281040 97281061 -105047286 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1958 77 21 45 chr4 97281064 97281350 -105046997 - AluSc SINE Alu -30 279 1 2141 61 0 4 chr4 97281362 97281626 -105046721 - AluSc SINE Alu -8 301 39 366 183 0 12 chr4 97281787 97281869 -105046478 + L1MA4A LINE L1 6016 6096 -207 261 0 0 0 chr4 97281905 97281934 -105046413 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1977 116 4 0 chr4 97281937 97282212 -105046135 - AluSp SINE Alu -37 276 1 236 256 56 22 chr4 97285722 97285812 -105042535 + L3b LINE CR1 1135 1227 -356 567 258 12 24 chr4 97286528 97286695 -105041652 + MIR SINE MIR 98 262 0 690 340 79 37 chr4 97287336 97287869 -105040478 - L2 LINE L2 -40 3273 2719 5221 162 44 24 chr4 97287884 97289249 -105039098 - L1MA4A LINE L1 -6 6297 4906 979 318 47 53 chr4 97289538 97290108 -105038239 - L2 LINE L2 -997 2317 1751 459 316 52 48 chr4 97290135 97290366 -105037981 - L2 LINE L2 -1811 1503 1272 242 351 14 0 chr4 97290613 97290687 -105037660 + MIR SINE MIR 32 106 -156 1693 129 13 79 chr4 97291659 97291977 -105036370 - AluSq SINE Alu -16 297 1 1843 114 8 0 chr4 97292056 97292318 -105036029 + AluSg SINE Alu 46 309 -1 796 304 73 36 chr4 97292354 97292765 -105035582 + LTR16A LTR ERVL 18 443 -7 25 31 0 0 chr4 97293929 97293961 -105034386 + AT_rich Low_complexity Low_complexity 1 32 0 1901 120 55 0 chr4 97293972 97294264 -105034083 - AluSc SINE Alu -1 308 1 29 28 0 0 chr4 97294330 97294366 -105033981 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr4 97294493 97294521 -105033826 + AT_rich Low_complexity Low_complexity 1 28 0 345 299 35 35 chr4 97295248 97295392 -105032955 - L2 LINE L2 -9 3304 3161 745 235 135 31 chr4 97295425 97295685 -105032662 - MER2 DNA MER2_type 0 345 59 628 254 138 5 chr4 97295816 97296005 -105032342 - L2 LINE L2 -439 2875 2662 332 286 165 0 chr4 97296046 97296179 -105032168 - MLT1J LTR MaLR -102 409 255 410 305 93 37 chr4 97296590 97296859 -105031488 + L2 LINE L2 3029 3312 -1 2307 86 3 0 chr4 97298308 97298609 -105029738 + AluY SINE Alu 1 302 -9 596 236 112 93 chr4 97299062 97299427 -105028920 + MLT1J LTR MaLR 114 425 -21 190 306 65 59 chr4 97299450 97299550 -105028797 + MIR SINE MIR 88 186 -76 1618 134 0 8 chr4 97299550 97299788 -105028559 + AluSx SINE Alu 33 268 -44 190 306 65 59 chr4 97299788 97299812 -105028535 + MIR SINE MIR 186 208 -54 911 186 23 6 chr4 97299812 97299984 -105028363 + FAM SINE Alu 1 175 0 190 306 65 59 chr4 97299984 97300028 -105028319 + MIR SINE MIR 208 258 -4 2237 128 8 35 chr4 97300597 97300971 -105027376 - THE1B LTR MaLR 0 364 1 11218 107 10 1 chr4 97300971 97302536 -105025811 - THE1B-int LTR MaLR 0 1580 1 2320 117 3 38 chr4 97302544 97302912 -105025435 - THE1B LTR MaLR -8 356 2 258 182 76 0 chr4 97303126 97303192 -105025155 - MER103 DNA DNA -77 89 19 200 284 95 0 chr4 97304597 97304671 -105023676 - MIR SINE MIR -67 195 115 27 87 0 0 chr4 97305618 97305687 -105022660 + AT_rich Low_complexity Low_complexity 1 69 0 23 0 0 0 chr4 97305951 97305974 -105022373 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 97306077 97306114 -105022233 + AT_rich Low_complexity Low_complexity 1 37 0 1662 148 0 46 chr4 97306624 97306908 -105021439 - AluJb SINE Alu -2 310 40 454 387 12 6 chr4 97309075 97309248 -105019099 + L3 LINE CR1 1402 1575 -2 1868 159 35 61 chr4 97309602 97309997 -105018350 + MLT1B LTR MaLR 6 390 0 295 213 13 13 chr4 97310078 97310153 -105018194 + MER20 DNA MER1_type 90 164 -55 294 29 0 0 chr4 97311238 97311273 -105017074 + (TG)n Simple_repeat Simple_repeat 2 36 0 357 295 135 33 chr4 97311484 97311728 -105016619 - MLT1J LTR MaLR -19 492 224 22 35 0 0 chr4 97312565 97312594 -105015753 + AT_rich Low_complexity Low_complexity 1 29 0 1991 116 0 4 chr4 97313041 97313317 -105015030 + AluSg SINE Alu 25 299 -11 327 218 0 0 chr4 97313849 97313932 -105014415 + L1ME3A LINE L1 6088 6169 -1 244 326 42 11 chr4 97314014 97314109 -105014238 + L2 LINE L2 3211 3308 -5 2563 102 5 8 chr4 97314551 97314935 -105013412 + L1PA8 LINE L1 5789 6171 -1 5412 145 10 7 chr4 97314941 97315892 -105012455 + L1PA15 LINE L1 5318 6300 0 636 243 20 7 chr4 97316130 97316282 -105012065 - MLT1B LTR MaLR -170 220 67 500 253 68 26 chr4 97317058 97317248 -105011099 - MIR SINE MIR -1 261 64 21 36 0 0 chr4 97317354 97317382 -105010965 + AT_rich Low_complexity Low_complexity 1 28 0 230 190 279 0 chr4 97317465 97317544 -105010803 - MER103 DNA DNA -7 159 59 699 247 18 12 chr4 97317721 97317887 -105010460 + FRAM SINE Alu 1 163 -13 414 0 0 0 chr4 97318240 97318286 -105010061 + (CA)n Simple_repeat Simple_repeat 2 47 0 24 0 0 0 chr4 97319447 97319471 -105008876 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 97319624 97319652 -105008695 + AT_rich Low_complexity Low_complexity 1 28 0 228 222 0 0 chr4 97319873 97319918 -105008429 + (TG)n Simple_repeat Simple_repeat 2 46 0 1858 225 81 4 chr4 97319958 97320425 -105007922 + MLT1D LTR MaLR 1 503 -2 21 0 0 0 chr4 97321319 97321340 -105007007 + AT_rich Low_complexity Low_complexity 1 21 0 13061 154 28 38 chr4 97321503 97321632 -105006715 - Tigger2 DNA MER2_type -287 2431 2302 2492 105 3 0 chr4 97321632 97321983 -105006364 + THE1A LTR MaLR 1 352 -3 13061 154 28 38 chr4 97321983 97324308 -105004039 - Tigger2 DNA MER2_type -416 2302 2 1517 182 11 115 chr4 97325382 97325434 -105002913 - MLT1B LTR MaLR 0 390 334 2230 137 190 24 chr4 97325434 97325886 -105002461 - MER1A DNA MER1_type 0 527 1 1517 182 11 115 chr4 97325886 97326268 -105002079 - MLT1B LTR MaLR -56 334 1 290 260 27 0 chr4 97326399 97326472 -105001875 + L2 LINE L2 3198 3272 0 21 36 0 0 chr4 97326582 97326610 -105001737 + AT_rich Low_complexity Low_complexity 1 28 0 346 326 28 33 chr4 97327353 97327534 -105000813 + MIR SINE MIR 56 235 -27 21 36 0 0 chr4 97328102 97328130 -105000217 + AT_rich Low_complexity Low_complexity 1 28 0 758 294 19 5 chr4 97328208 97328422 -104999925 - MIR SINE MIR -21 241 25 1772 180 6 12 chr4 97328600 97328944 -104999403 - L1MC1 LINE L1 -15 6318 5977 414 282 7 13 chr4 97329114 97329263 -104999084 - L1M4 LINE L1 -1289 4857 4710 748 241 30 25 chr4 97330241 97330444 -104997903 - MLT1C LTR MaLR 0 467 264 189 0 0 0 chr4 97330555 97330576 -104997771 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 288 0 0 0 chr4 97330575 97330607 -104997740 + (TA)n Simple_repeat Simple_repeat 1 32 0 815 216 13 0 chr4 97330614 97330767 -104997580 + Tigger2 DNA MER2_type 2554 2708 -10 225 154 0 0 chr4 97331083 97331122 -104997225 + (TA)n Simple_repeat Simple_repeat 2 40 0 569 207 103 0 chr4 97331222 97331367 -104996980 + FRAM SINE Alu 8 167 -9 1267 93 6 0 chr4 97331918 97332101 -104996246 - L1PA13 LINE L1 0 6163 5980 21 36 0 0 chr4 97332614 97332642 -104995705 + AT_rich Low_complexity Low_complexity 1 28 0 432 0 0 0 chr4 97332977 97333025 -104995322 + (TG)n Simple_repeat Simple_repeat 2 49 0 455 342 54 8 chr4 97334033 97334273 -104994074 - MIR SINE MIR 0 262 12 531 287 65 30 chr4 97334373 97334603 -104993744 - MIR SINE MIR -2 260 23 1580 204 3 7 chr4 97334764 97335053 -104993294 + AluJo SINE Alu 1 288 -24 336 261 0 0 chr4 97335260 97335390 -104992957 + (TA)n Simple_repeat Simple_repeat 2 131 0 514 315 81 50 chr4 97335527 97336528 -104991819 + L1MEd LINE L1 568 1594 -4535 595 285 32 35 chr4 97336747 97337031 -104991316 + L1ME LINE L1 5357 5639 -523 1681 297 197 22 chr4 97337033 97338349 -104989998 + L2 LINE L2 1760 3313 0 27 0 0 0 chr4 97339196 97339223 -104989124 + AT_rich Low_complexity Low_complexity 1 27 0 34 0 0 0 chr4 97340074 97340108 -104988239 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr4 97340928 97340952 -104987395 + AT_rich Low_complexity Low_complexity 1 24 0 24 77 0 0 chr4 97341027 97341079 -104987268 + AT_rich Low_complexity Low_complexity 1 52 0 1479 197 3 20 chr4 97341579 97341878 -104986469 - AluJo SINE Alu -8 294 1 213 108 0 0 chr4 97343650 97343687 -104984660 + (CA)n Simple_repeat Simple_repeat 1 37 0 183 204 61 41 chr4 97344374 97344423 -104983924 - L3 LINE CR1 -3 1574 1525 25 83 0 0 chr4 97344423 97344483 -104983864 + AT_rich Low_complexity Low_complexity 1 60 0 28 29 0 0 chr4 97345095 97345130 -104983217 + AT_rich Low_complexity Low_complexity 1 35 0 395 314 97 82 chr4 97345235 97345394 -104982953 - L2 LINE L2 0 3313 3158 234 0 0 0 chr4 97345394 97345420 -104982927 + (TG)n Simple_repeat Simple_repeat 2 27 0 395 314 97 82 chr4 97345420 97345469 -104982878 - L2 LINE L2 -155 3158 3111 1611 182 10 33 chr4 97345469 97345776 -104982571 - AluJo SINE Alu -12 300 1 395 314 97 82 chr4 97345776 97346040 -104982307 - L2 LINE L2 -202 3111 2833 216 0 0 0 chr4 97346957 97346981 -104981366 + (CA)n Simple_repeat Simple_repeat 2 25 0 668 59 20 0 chr4 97347570 97347671 -104980676 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 182 177 81 81 chr4 97347759 97347821 -104980526 + MIR SINE MIR 83 144 -64 2207 65 3 29 chr4 97348837 97349143 -104979204 + AluY SINE Alu 1 298 -13 285 312 134 29 chr4 97353616 97353892 -104974455 - L2 LINE L2 -1 3312 3008 371 371 24 24 chr4 97353962 97354129 -104974218 - L2 LINE L2 0 3272 3106 410 236 141 29 chr4 97354241 97354429 -104973918 + MLT1E1 LTR MaLR 3 204 -420 * 567 144 30 6 chr4 97354428 97354539 -104973808 + MLT1E3 LTR MaLR 434 624 0 341 310 7 39 chr4 97354862 97355017 -104973330 - L2 LINE L2 -5 3308 3159 252 295 166 29 chr4 97355503 97355642 -104972705 + MIR SINE MIR 54 211 -51 746 249 107 0 chr4 97355674 97355871 -104972476 + MER20 DNA MER1_type 1 218 -1 12890 153 32 14 chr4 97356218 97356832 -104971515 - Tigger1 DNA MER2_type -4 2414 1813 2229 105 3 0 chr4 97356832 97357137 -104971210 + AluY SINE Alu 1 306 -5 12890 153 32 14 chr4 97357137 97358893 -104969454 - Tigger1 DNA MER2_type -605 1813 1 31 44 0 0 chr4 97360279 97360324 -104968023 + AT_rich Low_complexity Low_complexity 1 45 0 26 50 0 0 chr4 97360892 97360932 -104967415 + AT_rich Low_complexity Low_complexity 1 40 0 273 118 0 0 chr4 97361105 97361156 -104967191 + (CA)n Simple_repeat Simple_repeat 2 52 0 1449 158 14 18 chr4 97361672 97361951 -104966396 - L1PA16 LINE L1 0 6166 5889 22 35 0 0 chr4 97362023 97362052 -104966295 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 97362062 97362085 -104966262 + AT_rich Low_complexity Low_complexity 1 23 0 362 291 154 6 chr4 97362441 97362616 -104965731 - MIR SINE MIR -39 223 23 266 356 79 11 chr4 97362799 97362976 -104965371 - L2 LINE L2 -243 3029 2841 1372 176 26 65 chr4 97366783 97367124 -104961223 - MLT1B LTR MaLR 0 390 63 1030 219 72 32 chr4 97367590 97367869 -104960478 + MER63B DNA MER1_type 2 291 -145 24 85 0 0 chr4 97367979 97368038 -104960309 + AT_rich Low_complexity Low_complexity 1 59 0 292 281 248 0 chr4 97368895 97369048 -104959299 + MIR SINE MIR 20 210 -52 2021 153 31 6 chr4 97369343 97369696 -104958651 + L1PA16 LINE L1 5796 6157 -9 22 0 0 0 chr4 97370311 97370333 -104958014 + AT_rich Low_complexity Low_complexity 1 22 0 218 311 0 0 chr4 97370430 97370491 -104957856 + L2 LINE L2 3251 3311 -2 1139 236 44 62 chr4 97370680 97371065 -104957282 + Charlie1a DNA MER1_type 1 378 -1077 531 100 0 0 chr4 97371128 97371208 -104957139 - Alu SINE Alu 0 310 231 1947 121 7 4 chr4 97371325 97371606 -104956741 - AluSx SINE Alu -30 282 1 3094 206 85 21 chr4 97371608 97372518 -104955829 + Charlie1a DNA MER1_type 482 1449 -6 1611 198 3 13 chr4 97372593 97372907 -104955440 - AluJb SINE Alu -1 311 1 254 214 36 0 chr4 97373033 97373089 -104955258 - Charlie1a DNA MER1_type -916 539 482 * 261 98 0 24 chr4 97373083 97373124 -104955223 + AluSp SINE Alu 129 168 -135 3174 211 12 15 chr4 97375387 97376323 -104952024 + L1M1 LINE L1 3412 4347 -3218 24 77 0 0 chr4 97376325 97376377 -104951970 + AT_rich Low_complexity Low_complexity 1 52 0 1584 65 23 0 chr4 97376377 97376591 -104951756 + L1PA3 LINE L1 5937 6155 0 23 0 0 0 chr4 97377541 97377564 -104950783 + AT_rich Low_complexity Low_complexity 1 23 0 1958 170 110 7 chr4 97378473 97378890 -104949457 + LOR1b LTR ERV1 1 460 -1 226 236 55 0 chr4 97379333 97379388 -104948959 - L2 LINE L2 0 3313 3256 694 123 204 12 chr4 97379410 97379572 -104948775 + Charlie1 DNA MER1_type 45 237 -2524 500 195 8 70 chr4 97379566 97379624 -104948723 + Charlie1 DNA MER1_type 2629 2676 -85 * 986 246 18 0 chr4 97379624 97379844 -104948503 - MER58A DNA MER1_type 0 224 1 500 195 8 70 chr4 97379844 97379913 -104948434 + Charlie1 DNA MER1_type 2676 2748 -13 217 329 55 41 chr4 97380176 97380322 -104948025 - MER5A DNA MER1_type -6 183 36 21 57 0 0 chr4 97380431 97380466 -104947881 + AT_rich Low_complexity Low_complexity 1 35 0 397 300 50 0 chr4 97381234 97381334 -104947013 + L2 LINE L2 3141 3245 -27 1683 123 13 80 chr4 97383051 97383172 -104945175 - AluSx SINE Alu 0 314 187 2050 119 0 7 chr4 97383172 97383496 -104944851 + AluSx SINE Alu 1 312 0 1683 123 13 80 chr4 97383496 97383706 -104944641 - AluSx SINE Alu -127 187 3 23 54 0 0 chr4 97383967 97384004 -104944343 + AT_rich Low_complexity Low_complexity 1 37 0 1497 196 0 21 chr4 97384007 97384292 -104944055 - AluJb SINE Alu -31 281 3 246 343 34 68 chr4 97384295 97384441 -104943906 - MIR SINE MIR -120 142 2 201 282 71 47 chr4 97385578 97385663 -104942684 + MIR SINE MIR 58 144 -64 5885 91 9 0 chr4 97385755 97386566 -104941781 - L1PA8 LINE L1 0 6172 5355 3519 75 0 2 chr4 97386564 97387046 -104941301 + L1PA8 LINE L1 4868 5348 -798 * 211 220 20 0 chr4 97388105 97388155 -104940192 + (TTCA)n Simple_repeat Simple_repeat 3 53 0 285 267 0 0 chr4 97388459 97388534 -104939813 - Charlie1 DNA MER1_type -15 2746 2672 605 234 156 10 chr4 97388754 97388959 -104939388 - Charlie1 DNA MER1_type -311 2450 2216 1008 285 62 32 chr4 97389271 97389933 -104938414 - L2 LINE L2 0 3313 2645 337 278 10 0 chr4 97389933 97390030 -104938317 - MLT1L LTR MaLR -5 610 513 303 324 6 106 chr4 97390538 97390708 -104937639 + MER91A DNA MER1_type 44 196 0 241 0 59 0 chr4 97390861 97390895 -104937452 - L1PA7 LINE L1 -5 6149 6114 24 91 0 0 chr4 97391338 97391404 -104936943 + AT_rich Low_complexity Low_complexity 1 66 0 198 0 0 0 chr4 97393606 97393628 -104934719 + (CATGC)n Simple_repeat Simple_repeat 4 25 0 341 240 53 0 chr4 97396334 97396409 -104931938 - MIR SINE MIR -113 149 71 491 235 27 77 chr4 97396510 97396693 -104931654 - MER5B DNA MER1_type 0 178 5 239 275 43 0 chr4 97397945 97398014 -104930333 + MIR SINE MIR 60 131 -131 723 186 8 0 chr4 97398065 97398194 -104930153 + FLAM_C SINE Alu 1 130 -13 211 309 73 63 chr4 97398743 97398934 -104929413 - L2 LINE L2 -780 2534 2342 190 188 47 47 chr4 97399108 97399172 -104929175 - MIR SINE MIR -71 191 128 2053 133 3 13 chr4 97399555 97399863 -104928484 - AluSp SINE Alu -8 305 1 1752 176 19 26 chr4 97399953 97400266 -104928081 - AluJb SINE Alu -1 311 1 657 286 25 5 chr4 97400842 97401041 -104927306 + LTR41 LTR ERVL 1 203 -570 864 259 99 68 chr4 97401281 97401675 -104926672 + LTR41 LTR ERVL 362 767 -6 246 136 0 0 chr4 97402210 97402254 -104926093 + (TG)n Simple_repeat Simple_repeat 2 45 0 890 267 140 6 chr4 97402393 97402715 -104925632 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr4 97404178 97404199 -104924148 + AT_rich Low_complexity Low_complexity 1 21 0 1868 151 31 0 chr4 97404815 97405106 -104923241 + AluSx SINE Alu 1 300 -12 620 205 0 0 chr4 97405416 97405528 -104922819 - L1PB3 LINE L1 -5 6149 6038 319 297 90 27 chr4 97406265 97406376 -104921971 + L3 LINE CR1 1455 1572 -5 21 0 0 0 chr4 97406631 97406652 -104921695 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 97406752 97406773 -104921574 + AT_rich Low_complexity Low_complexity 1 21 0 235 287 201 23 chr4 97460045 97460219 -104868128 + MIR SINE MIR 47 251 -11 340 282 27 27 chr4 97460421 97460531 -104867816 - MIR SINE MIR -122 140 31 24 32 0 0 chr4 97460662 97460693 -104867654 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 97460713 97460736 -104867611 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr4 97460902 97460923 -104867424 + (T)n Simple_repeat Simple_repeat 1 21 0 1358 276 88 29 chr4 97461132 97461925 -104866422 + L1ME2 LINE L1 3425 4264 -1882 189 0 0 0 chr4 97461947 97461968 -104866379 + (CA)n Simple_repeat Simple_repeat 2 22 0 1856 252 100 69 chr4 97461980 97463419 -104864928 + L1ME2 LINE L1 4667 6154 -10 191 114 29 0 chr4 97463466 97463501 -104864846 + (TA)n Simple_repeat Simple_repeat 1 36 0 2653 39 12 0 chr4 97464453 97464784 -104863563 - L1PA3 LINE L1 -1590 4556 4222 7540 28 5 0 chr4 97464784 97466369 -104861978 + L1PA3 LINE L1 4564 6152 -3 2924 207 37 47 chr4 97467182 97468157 -104860190 - L1M3 LINE L1 -693 5487 4528 1444 274 2 2 chr4 97468161 97468580 -104859767 - L1M3 LINE L1 -1988 4158 3740 41723 55 8 1 chr4 97468887 97473624 -104854723 - L1PA4 LINE L1 0 6155 1364 187 31 62 0 chr4 97473624 97473656 -104854691 + (CATTT)n Simple_repeat Simple_repeat 5 38 0 41723 55 8 1 chr4 97473656 97475018 -104853329 - L1PA4 LINE L1 -4791 1364 13 526 269 55 48 chr4 97475498 97475788 -104852559 - HAL1 LINE L1 -829 1678 1387 22 0 0 0 chr4 97476411 97476433 -104851914 + AT_rich Low_complexity Low_complexity 1 22 0 594 315 11 0 chr4 97477061 97477245 -104851102 - MER5A DNA MER1_type -3 186 1 183 129 0 0 chr4 97478022 97478053 -104850294 + (TG)n Simple_repeat Simple_repeat 2 32 0 250 209 30 0 chr4 97478238 97478305 -104850042 - L1ME LINE L1 -242 5879 5811 273 29 0 0 chr4 97479456 97479490 -104848857 + (TG)n Simple_repeat Simple_repeat 1 34 0 30 69 0 0 chr4 97479572 97479630 -104848717 + AT_rich Low_complexity Low_complexity 1 58 0 988 56 0 0 chr4 97479640 97479766 -104848581 - L1PA4 LINE L1 -6 6149 6024 1177 193 100 8 chr4 97481657 97481951 -104846396 - AluJb SINE Alu 0 318 1 847 311 76 22 chr4 97482129 97482576 -104845771 - L1MC4a LINE L1 -1902 5906 5436 1478 220 67 29 chr4 97483117 97483567 -104844780 - MLT1C LTR MaLR 0 467 1 315 213 0 0 chr4 97484525 97484605 -104843742 + (CATATA)n Simple_repeat Simple_repeat 5 84 0 2068 87 11 31 chr4 97484737 97484938 -104843409 - AluY SINE Alu 0 312 118 7722 19 0 0 chr4 97484938 97486225 -104842122 - L1PA3 LINE L1 0 6155 4868 2068 87 11 31 chr4 97486225 97486339 -104842008 - AluY SINE Alu -194 118 3 10108 206 55 40 chr4 97486399 97489809 -104838538 - L1MC1 LINE L1 -18 6595 3020 3980 74 4 2 chr4 97489809 97490338 -104838009 + L1PA7 LINE L1 5624 6153 -1 10108 206 55 40 chr4 97490338 97493207 -104835140 - L1MC1 LINE L1 -3593 3020 196 13497 155 24 16 chr4 97493211 97494661 -104833686 - Tigger1 DNA MER2_type 0 2418 942 1392 103 40 0 chr4 97494661 97494884 -104833463 + L1PA8 LINE L1 5940 6171 -1 13497 155 24 16 chr4 97494884 97495779 -104832568 - Tigger1 DNA MER2_type -1476 942 55 279 0 0 0 chr4 97495779 97495810 -104832537 + (A)n Simple_repeat Simple_repeat 1 31 0 1827 112 0 4 chr4 97496365 97496633 -104831714 - AluSx SINE Alu -45 267 1 22 80 0 0 chr4 97497293 97497343 -104831004 + AT_rich Low_complexity Low_complexity 1 50 0 12016 154 16 7 chr4 97498058 97500093 -104828254 - Tigger1 DNA MER2_type 0 2418 366 21 0 0 0 chr4 97501533 97501554 -104826793 + AT_rich Low_complexity Low_complexity 1 21 0 1449 222 30 12 chr4 97501591 97501929 -104826418 - Tigger1 DNA MER2_type -2073 345 2 213 65 0 0 chr4 97502027 97502058 -104826289 + (TTTAA)n Simple_repeat Simple_repeat 2 32 0 2296 76 0 0 chr4 97502064 97502355 -104825992 - AluY SINE Alu -20 291 1 24 77 0 0 chr4 97503746 97503798 -104824549 + AT_rich Low_complexity Low_complexity 1 52 0 8718 96 7 6 chr4 97504683 97506704 -104821643 + L1PA7 LINE L1 4126 6149 -5 285 298 24 36 chr4 97506744 97506828 -104821519 - L2 LINE L2 -15 3257 3175 1714 95 0 0 chr4 97507483 97507715 -104820632 - AluSq SINE Alu -2 311 80 25 51 0 0 chr4 97508101 97508140 -104820207 + AT_rich Low_complexity Low_complexity 1 39 0 501 312 38 27 chr4 97508819 97509005 -104819342 + MIR3 SINE MIR 3 190 -18 428 344 188 41 chr4 97509486 97510173 -104818174 + L3 LINE CR1 386 1173 -404 189 0 0 0 chr4 97510815 97510836 -104817511 + (TA)n Simple_repeat Simple_repeat 1 21 0 224 319 11 22 chr4 97510945 97511036 -104817311 + L3 LINE CR1 1333 1422 -155 279 279 265 15 chr4 97511136 97511272 -104817075 - MIR SINE MIR -25 237 68 2144 113 3 0 chr4 97512172 97512474 -104815873 - AluSx SINE Alu -9 303 1 222 306 20 20 chr4 97512509 97512607 -104815740 + MIR SINE MIR 92 189 -73 211 256 44 0 chr4 97514648 97514738 -104813609 + (TTTG)n Simple_repeat Simple_repeat 2 95 0 250 351 219 14 chr4 97515402 97515681 -104812666 - L2 LINE L2 -337 2977 2642 3942 166 35 29 chr4 97515705 97515981 -104812366 - L1PB4 LINE L1 -8 6148 5875 2372 77 0 13 chr4 97515981 97516291 -104812056 + AluY SINE Alu 1 306 -5 3942 166 35 29 chr4 97516291 97517052 -104811295 - L1PB4 LINE L1 -281 5875 5023 1574 246 40 103 chr4 97517050 97517256 -104811091 - L1PB4 LINE L1 -2251 3895 3678 * 189 0 0 0 chr4 97517256 97517277 -104811070 + (TG)n Simple_repeat Simple_repeat 2 22 0 1574 246 40 103 chr4 97517277 97517488 -104810859 - L1PB4 LINE L1 -2468 3678 3455 491 108 14 0 chr4 97517488 97517562 -104810785 - MADE1 DNA Mariner -5 75 1 1574 246 40 103 chr4 97517562 97517911 -104810436 - L1PB4 LINE L1 -2691 3455 3108 * 2418 214 12 90 chr4 97517886 97518653 -104809694 - L1 LINE L1 -952 5194 4488 48 53 0 0 chr4 97519754 97519830 -104808517 + AT_rich Low_complexity Low_complexity 1 76 0 691 217 11 39 chr4 97520967 97521147 -104807200 + MER3 DNA MER1_type 32 206 -3 1071 114 0 0 chr4 97522049 97522198 -104806149 - AluSg/x SINE Alu -10 300 152 440 216 10 0 chr4 97522304 97522401 -104805946 + MER5A DNA MER1_type 9 106 -83 25 31 0 0 chr4 97522605 97522637 -104805710 + AT_rich Low_complexity Low_complexity 1 32 0 2031 121 7 0 chr4 97522853 97523143 -104805204 - AluSp SINE Alu -21 292 1 2085 126 3 0 chr4 97523175 97523476 -104804871 + AluSq SINE Alu 1 302 -11 806 94 0 0 chr4 97523908 97524014 -104804333 + AluY SINE Alu 195 300 -11 376 303 0 0 chr4 97524953 97525042 -104803305 - MER81 DNA DNA -22 92 4 21 0 0 0 chr4 97525289 97525310 -104803037 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 97525635 97525660 -104802687 + AT_rich Low_complexity Low_complexity 1 25 0 214 185 22 130 chr4 97525678 97525770 -104802577 - MER5A DNA MER1_type -25 164 83 1550 180 76 3 chr4 97526086 97526375 -104801972 + MER2 DNA MER2_type 11 320 -25 23 0 0 0 chr4 97529362 97529385 -104798962 + AT_rich Low_complexity Low_complexity 1 23 0 3165 130 8 4 chr4 97529850 97530364 -104797983 - L1PA13 LINE L1 -5 6158 5643 1629 158 28 22 chr4 97530364 97530681 -104797666 - THE1C LTR MaLR -4 371 53 489 239 65 13 chr4 97530751 97530906 -104797441 + L1ME3A LINE L1 5952 6114 -56 402 91 0 45 chr4 97530929 97530995 -104797352 - THE1C LTR MaLR -312 63 1 2478 151 10 9 chr4 97530995 97531738 -104796609 - L1P4 LINE L1 -512 5651 4905 41983 55 5 1 chr4 97531792 97537918 -104790429 - L1PA4 LINE L1 -5 6150 1 1410 268 49 19 chr4 97538014 97538484 -104789863 + L1ME3A LINE L1 5679 6162 -8 4922 43 3 0 chr4 97539230 97539837 -104788510 + L1PA4 LINE L1 5547 6155 0 949 200 105 12 chr4 97542103 97542418 -104785929 - MSTD LTR MaLR 0 365 3 1012 228 137 44 chr4 97542700 97543086 -104785261 - LTR40a LTR ERVL 0 519 98 1013 197 5 5 chr4 97543271 97543464 -104784883 - MER46A DNA MER2_type -43 193 1 475 237 8 25 chr4 97543464 97543567 -104784780 - LTR40b LTR ERVL -361 101 1 22 35 0 0 chr4 97543730 97543759 -104784588 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 97544525 97544548 -104783799 + GC_rich Low_complexity Low_complexity 1 23 0 306 0 0 0 chr4 97544918 97544952 -104783395 + (A)n Simple_repeat Simple_repeat 1 34 0 266 217 0 17 chr4 97544952 97545012 -104783335 - Tigger1 DNA MER2_type -2358 60 2 757 235 24 0 chr4 97545013 97545183 -104783164 - L1MCa LINE L1 -6233 193 20 227 367 33 8 chr4 97545556 97545676 -104782671 - L2 LINE L2 -12 3301 3179 2071 154 34 3 chr4 97545934 97546285 -104782062 + THE1B LTR MaLR 1 362 -2 340 328 77 21 chr4 97546401 97546543 -104781804 - MIR SINE MIR -64 144 19 24 0 0 0 chr4 97546959 97546983 -104781364 + AT_rich Low_complexity Low_complexity 1 24 0 213 261 87 22 chr4 97547384 97547476 -104780871 + L2 LINE L2 3134 3231 -82 203 148 185 0 chr4 97547674 97547728 -104780619 - MIR SINE MIR -76 186 123 24 0 0 0 chr4 97547733 97547757 -104780590 + AT_rich Low_complexity Low_complexity 1 24 0 713 169 177 68 chr4 97548073 97548310 -104780037 - L1MB8 LINE L1 -50 6128 5866 372 245 21 0 chr4 97548995 97549089 -104779258 - MIR SINE MIR -4 258 163 290 100 0 0 chr4 97549873 97549913 -104778434 + MADE1 DNA Mariner 41 80 0 215 170 21 0 chr4 97550388 97550435 -104777912 + (TA)n Simple_repeat Simple_repeat 2 49 0 21 0 0 0 chr4 97550473 97550494 -104777853 + AT_rich Low_complexity Low_complexity 1 21 0 521 217 0 0 chr4 97550507 97550599 -104777748 - AluJ/FLAM SINE Alu -218 94 3 5146 154 23 10 chr4 97550877 97551800 -104776547 - L1MA5 LINE L1 0 6300 5366 3938 92 5 3 chr4 97552066 97552631 -104775716 - L1PA13 LINE L1 0 6163 5598 512 96 27 0 chr4 97552632 97552705 -104775642 + L1PA13 LINE L1 5547 5621 -542 6540 74 7 3 chr4 97553296 97554313 -104774034 + L1PA7 LINE L1 5132 6152 -2 2390 70 0 0 chr4 97554341 97554643 -104773704 + AluY SINE Alu 1 302 -9 250 270 54 39 chr4 97556359 97556478 -104771869 - MIR SINE MIR -63 145 49 1316 353 98 16 chr4 97556631 97557653 -104770694 - L2 LINE L2 -177 3136 2037 313 307 102 15 chr4 97557798 97557935 -104770412 + L2 LINE L2 3160 3308 -5 1580 183 43 7 chr4 97558215 97558516 -104769831 + AluJo SINE Alu 1 312 0 867 216 103 0 chr4 97558529 97558811 -104769536 + MER33 DNA MER1_type 3 313 -11 273 309 218 0 chr4 97558903 97559013 -104769334 + MER5A DNA MER1_type 56 189 0 23 68 0 0 chr4 97559789 97559833 -104768514 + AT_rich Low_complexity Low_complexity 1 44 0 185 324 44 0 chr4 97560429 97560497 -104767850 - MIR SINE MIR -114 148 78 315 71 0 0 chr4 97561488 97561530 -104766817 + (A)n Simple_repeat Simple_repeat 1 42 0 735 221 182 65 chr4 97562642 97562949 -104765398 - MLT1A1 LTR MaLR -22 343 1 381 350 0 8 chr4 97563430 97563547 -104764800 + MIR3 SINE MIR 69 184 -24 1043 263 138 42 chr4 97564123 97564674 -104763673 - L1MC4a LINE L1 -150 7658 7055 2127 53 0 46 chr4 97564699 97565002 -104763345 - AluY SINE Alu -22 289 1 621 244 18 0 chr4 97566031 97566195 -104762152 + L1MD3 LINE L1 7829 7995 0 26 64 0 0 chr4 97566213 97566260 -104762087 + AT_rich Low_complexity Low_complexity 1 47 0 1220 25 6 19 chr4 97566901 97567059 -104761288 + L1PA4 LINE L1 5987 6142 -13 229 148 19 19 chr4 97567059 97567108 -104761239 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 207 191 0 21 chr4 97567460 97567507 -104760840 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 1442 264 58 62 chr4 97567518 97568019 -104760328 - MLT1F1 LTR MaLR -2 565 67 2318 75 10 3 chr4 97568463 97568768 -104759579 + AluY SINE Alu 1 307 -4 225 220 33 22 chr4 97568769 97568860 -104759487 + L1MCa LINE L1 1979 2070 -4356 468 0 0 0 chr4 97569664 97569716 -104758631 + (TG)n Simple_repeat Simple_repeat 1 52 0 302 173 0 74 chr4 97569716 97569797 -104758550 + L1MC4 LINE L1 6616 6690 -1352 1522 126 83 54 chr4 97569798 97570076 -104758271 - AluSx SINE Alu -22 290 5 236 358 52 29 chr4 97570481 97570654 -104757693 - MIR SINE MIR -31 231 55 197 319 11 66 chr4 97573205 97573296 -104755051 - L2 LINE L2 0 3313 3228 1656 116 116 0 chr4 97573807 97574085 -104754262 - AluSq SINE Alu 0 311 5 634 204 221 0 chr4 97574329 97574501 -104753846 - MER63A DNA MER1_type 0 210 1 2074 137 0 16 chr4 97575473 97575787 -104752560 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr4 97575821 97575842 -104752505 + AT_rich Low_complexity Low_complexity 1 21 0 218 309 0 0 chr4 97577135 97577190 -104751157 + MIR SINE MIR 93 147 -61 * 239 297 0 77 chr4 97577177 97577268 -104751079 + MIR SINE MIR 5 88 -174 22 35 0 0 chr4 97578286 97578315 -104750032 + AT_rich Low_complexity Low_complexity 1 29 0 464 217 8 67 chr4 97578790 97578910 -104749437 - MER81 DNA DNA 0 114 2 334 320 19 0 chr4 97579228 97579331 -104749016 - L1ME LINE L1 -490 5631 5527 23 0 0 0 chr4 97579763 97579786 -104748561 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 97580081 97580118 -104748229 + AT_rich Low_complexity Low_complexity 1 37 0 993 125 90 50 chr4 97580221 97580421 -104747926 + L1PA16 LINE L1 5943 6150 -16 25 0 0 0 chr4 97580680 97580705 -104747642 + AT_rich Low_complexity Low_complexity 1 25 0 185 388 69 0 chr4 97581205 97581321 -104747026 - MIR SINE MIR -71 191 68 241 306 83 39 chr4 97581459 97581639 -104746708 - L1ME LINE L1 -440 5681 5494 1514 216 132 27 chr4 97582195 97582643 -104745704 - MLT1D LTR MaLR -8 497 3 257 250 14 14 chr4 97583187 97583259 -104745088 + MER103 DNA DNA 88 159 -7 515 212 8 38 chr4 97583448 97583580 -104744767 + MER46C DNA MER2_type 135 262 -76 1362 342 142 28 chr4 97583785 97584965 -104743382 + L2 LINE L2 1391 2705 -609 1547 208 30 1 chr4 97584980 97585330 -104743017 + L1MB5 LINE L1 5608 5966 -208 347 349 60 30 chr4 97585351 97585586 -104742761 + L2 LINE L2 2835 3076 -237 21 0 0 0 chr4 97586442 97586463 -104741884 + AT_rich Low_complexity Low_complexity 1 21 0 292 338 15 45 chr4 97586766 97586967 -104741380 + HAL1b LINE L1 306 500 -848 1969 133 27 0 chr4 97587226 97587519 -104740828 + AluSx SINE Alu 3 303 -9 234 156 44 0 chr4 97587920 97587965 -104740382 + CT-rich Low_complexity Low_complexity 2 48 0 180 0 0 0 chr4 97589134 97589154 -104739193 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 217 256 0 0 chr4 97589772 97589815 -104738532 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 601 250 61 33 chr4 97589822 97590002 -104738345 - MER21B LTR ERV1 -328 535 351 244 326 109 31 chr4 97590043 97590337 -104738010 - HAL1b LINE L1 -863 485 169 23 0 0 0 chr4 97590557 97590580 -104737767 + AT_rich Low_complexity Low_complexity 1 23 0 204 140 20 40 chr4 97590586 97590636 -104737711 + T-rich Low_complexity Low_complexity 5 53 0 1140 269 20 35 chr4 97590771 97591113 -104737234 - MER21B LTR ERV1 -526 337 1 268 222 0 28 chr4 97592315 97592387 -104735960 + (TA)n Simple_repeat Simple_repeat 1 70 0 585 152 0 0 chr4 97593609 97593701 -104734646 - MLT1A1 LTR MaLR 0 365 274 436 228 10 0 chr4 97593705 97593806 -104734541 - MLT1A1 LTR MaLR -272 102 1 182 40 0 0 chr4 97593948 97593973 -104734374 + L3b LINE CR1 1256 1280 -303 578 316 52 17 chr4 97594803 97595034 -104733313 + MIR SINE MIR 1 239 -23 199 227 167 0 chr4 97595045 97595111 -104733236 - MIR SINE MIR -37 225 149 273 29 0 0 chr4 97595516 97595550 -104732797 + (TG)n Simple_repeat Simple_repeat 2 35 0 200 354 20 0 chr4 97595569 97595668 -104732679 - L2 LINE L2 -1609 1705 1605 248 308 0 0 chr4 97595810 97595875 -104732472 - MIR SINE MIR -10 252 188 1600 153 66 33 chr4 97596997 97597298 -104731049 + AluSx SINE Alu 1 311 -1 198 191 0 0 chr4 97598663 97598705 -104729642 + (CATATA)n Simple_repeat Simple_repeat 5 46 0 347 134 90 0 chr4 97599283 97599350 -104728997 + L1MA4 LINE L1 6222 6294 -6 600 296 12 12 chr4 97599399 97599571 -104728776 + MIR SINE MIR 6 177 -85 2117 104 10 10 chr4 97600216 97600523 -104727824 + AluSx SINE Alu 1 307 -5 31 88 0 0 chr4 97600846 97600926 -104727421 + AT_rich Low_complexity Low_complexity 1 80 0 44 56 0 0 chr4 97600986 97601058 -104727289 + AT_rich Low_complexity Low_complexity 1 72 0 376 167 77 6 chr4 97601066 97601296 -104727051 + (TA)n Simple_repeat Simple_repeat 1 246 0 30 59 0 0 chr4 97601310 97601361 -104726986 + AT_rich Low_complexity Low_complexity 1 51 0 352 113 0 0 chr4 97601419 97601472 -104726875 + MADE1 DNA Mariner 1 53 -27 210 241 0 0 chr4 97601595 97601649 -104726698 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 204 158 0 0 chr4 97601656 97601694 -104726653 + (CA)n Simple_repeat Simple_repeat 1 38 0 231 264 9 82 chr4 97601848 97601958 -104726389 - L1MC/D LINE L1 -2012 5796 5695 474 49 0 0 chr4 97602559 97602620 -104725727 + (TG)n Simple_repeat Simple_repeat 2 62 0 348 260 77 10 chr4 97602819 97602923 -104725424 - MER103 DNA DNA -43 123 13 21 36 0 0 chr4 97604047 97604075 -104724272 + AT_rich Low_complexity Low_complexity 1 28 0 386 254 53 0 chr4 97604085 97604199 -104724148 + L1ME2 LINE L1 6044 6163 -1 223 226 32 48 chr4 97604491 97604553 -104723794 + L2 LINE L2 3252 3312 -1 242 161 0 36 chr4 97604576 97604632 -104723715 + GA-rich Low_complexity Low_complexity 2 55 0 24 32 0 0 chr4 97605076 97605107 -104723240 + AT_rich Low_complexity Low_complexity 1 31 0 28 71 0 0 chr4 97607352 97607408 -104720939 + AT_rich Low_complexity Low_complexity 1 56 0 527 298 30 0 chr4 97607537 97607668 -104720679 - L2 LINE L2 0 3272 3138 241 370 37 7 chr4 97607811 97607946 -104720401 - L2 LINE L2 -377 2937 2799 226 137 0 219 chr4 97608067 97608140 -104720207 - L1MA5 LINE L1 -48 6252 6196 427 284 20 0 chr4 97608141 97608243 -104720104 + MER45A DNA AcHobo 61 164 -14 229 316 0 0 chr4 97609695 97609752 -104718595 + polypyrimidine Low_complexity Low_complexity 4 60 0 2033 147 0 0 chr4 97609850 97610150 -104718197 - AluSx SINE Alu -12 300 1 195 181 29 38 chr4 97610251 97610356 -104717991 + GA-rich Low_complexity Low_complexity 5 108 0 2119 109 0 29 chr4 97610498 97610809 -104717538 - AluSg SINE Alu -8 302 1 2114 106 75 29 chr4 97610933 97611281 -104717066 + THE1B LTR MaLR 1 364 0 1254 268 38 26 chr4 97612659 97613027 -104715320 - MER77 LTR ERV1 -4 601 253 1551 172 3 29 chr4 97614570 97614878 -104713469 - AluSx SINE Alu -12 300 1 1147 289 71 43 chr4 97614895 97615449 -104712898 - MLT1F1 LTR MaLR 0 567 1 32 67 0 0 chr4 97615937 97615997 -104712350 + AT_rich Low_complexity Low_complexity 1 60 0 6580 92 2 20 chr4 97616804 97617784 -104710563 - L1P LINE L1 -893 5253 4292 6673 56 0 15 chr4 97617784 97617973 -104710374 + L1PA7 LINE L1 5299 5489 -665 2404 74 0 3 chr4 97617973 97618270 -104710077 + AluY SINE Alu 1 296 -15 6673 56 0 15 chr4 97618270 97618936 -104709411 + L1PA7 LINE L1 5489 6145 -9 223 137 20 20 chr4 97618936 97618987 -104709360 + (TA)n Simple_repeat Simple_repeat 1 51 0 302 195 346 13 chr4 97619180 97619339 -104709008 + MIR SINE MIR 40 251 -11 23 0 0 0 chr4 97620565 97620588 -104707759 + AT_rich Low_complexity Low_complexity 1 23 0 325 100 20 0 chr4 97621290 97621340 -104707007 + MADE1 DNA Mariner 4 54 -26 2214 94 0 3 chr4 97621382 97621670 -104706677 - AluY SINE Alu -24 287 1 33 0 0 0 chr4 97621682 97621715 -104706632 + AT_rich Low_complexity Low_complexity 1 33 0 456 19 0 0 chr4 97621715 97621768 -104706579 + (TC)n Simple_repeat Simple_repeat 2 54 0 180 0 0 0 chr4 97621767 97621787 -104706560 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 412 71 0 0 chr4 97621788 97621844 -104706503 + L1PA6 LINE L1 6086 6141 -13 227 177 113 0 chr4 97621846 97621908 -104706439 - L1MC4 LINE L1 -1340 6702 6634 243 231 0 0 chr4 97622075 97622140 -104706207 + CT-rich Low_complexity Low_complexity 2 66 0 1667 52 4 26 chr4 97622402 97622634 -104705713 + L1PA5 LINE L1 5921 6147 -7 24 0 0 0 chr4 97622634 97622658 -104705689 + AT_rich Low_complexity Low_complexity 1 24 0 2614 189 188 15 chr4 97625532 97626182 -104702165 + L1MC3 LINE L1 7004 7752 -33 27 0 0 0 chr4 97628302 97628329 -104700018 + AT_rich Low_complexity Low_complexity 1 27 0 461 17 17 0 chr4 97629224 97629282 -104699065 + (TG)n Simple_repeat Simple_repeat 1 59 0 259 351 14 29 chr4 97630207 97630348 -104697999 - MIR SINE MIR -58 150 45 23 33 0 0 chr4 97630873 97630903 -104697444 + AT_rich Low_complexity Low_complexity 1 30 0 1537 182 43 40 chr4 97631045 97631392 -104696955 - MER7A DNA MER2_type 0 346 1 657 294 44 0 chr4 97631864 97632044 -104696303 + MER5A DNA MER1_type 1 188 -1 1035 16 16 16 chr4 97634116 97634269 -104694078 + L1PA3 LINE L1 6026 6155 0 345 62 0 0 chr4 97635853 97635901 -104692446 + (TG)n Simple_repeat Simple_repeat 2 49 0 292 259 12 24 chr4 97636153 97636238 -104692109 - MLT1L LTR MaLR -216 399 316 21 0 0 0 chr4 97636853 97636874 -104691473 + AT_rich Low_complexity Low_complexity 1 21 0 36 53 0 0 chr4 97637443 97637500 -104690847 + AT_rich Low_complexity Low_complexity 1 57 0 779 236 47 19 chr4 97638052 97638264 -104690083 - MER20 DNA MER1_type -1 218 1 1896 152 0 0 chr4 97639533 97639857 -104688490 + AluSx SINE Alu 1 324 0 335 255 25 50 chr4 97640130 97640251 -104688096 - MLT1H LTR MaLR -273 161 51 23 0 0 0 chr4 97642715 97642738 -104685609 + AT_rich Low_complexity Low_complexity 1 23 0 241 114 0 0 chr4 97642863 97642898 -104685449 + MADE1 DNA Mariner 1 35 -45 22 0 0 0 chr4 97643807 97643829 -104684518 + AT_rich Low_complexity Low_complexity 1 22 0 822 305 37 29 chr4 97644611 97644857 -104683490 - MIR SINE MIR 0 262 15 390 304 11 0 chr4 97645214 97645306 -104683041 - Tigger7 DNA MER2_type 0 2491 2399 2544 184 46 25 chr4 97645370 97645847 -104682500 - Tigger7 DNA MER2_type -2000 487 1 1274 174 113 58 chr4 97645994 97646287 -104682060 - MLT1A1 LTR MaLR -2 363 55 770 165 5 124 chr4 97646396 97646590 -104681757 - AluJo SINE Alu -141 171 1 616 267 50 30 chr4 97646611 97646813 -104681534 + MIR SINE MIR 54 259 -3 260 312 64 8 chr4 97647199 97647324 -104681023 + MIR SINE MIR 126 257 -5 2742 10 0 0 chr4 97647421 97647720 -104680627 + AluY SINE Alu 13 311 0 578 239 58 0 chr4 97647772 97647910 -104680437 + MER20 DNA MER1_type 74 219 0 2605 241 48 20 chr4 97648235 97649600 -104678747 - L1M4 LINE L1 -1603 4543 2979 1797 245 124 29 chr4 97649595 97650361 -104677986 - L1MCc LINE L1 -4888 1535 697 * 1160 202 58 0 chr4 97650494 97650737 -104677610 - Tigger2 DNA MER2_type -11 2707 2451 3715 153 49 43 chr4 97650802 97651539 -104676808 - Tigger2 DNA MER2_type -1974 744 4 183 262 0 0 chr4 97651779 97651821 -104676526 - L2 LINE L2 -2 3311 3270 2610 144 14 0 chr4 97652860 97653282 -104675065 - MSTA LTR MaLR 0 428 1 283 212 24 0 chr4 97653297 97653382 -104674965 + (TA)n Simple_repeat Simple_repeat 1 87 0 313 352 19 37 chr4 97653761 97653923 -104674424 - MIR3 SINE MIR -27 181 23 185 231 26 0 chr4 97655001 97655040 -104673307 - L2 LINE L2 -9 3263 3224 675 285 153 21 chr4 97655380 97655713 -104672634 - L2 LINE L2 -2 3311 2935 21 57 0 0 chr4 97655905 97655940 -104672407 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr4 97657729 97657753 -104670594 + AT_rich Low_complexity Low_complexity 1 24 0 208 237 34 17 chr4 97658231 97658290 -104670057 - L2 LINE L2 -243 3070 3011 1754 142 59 9 chr4 97658329 97658667 -104669680 + THE1C LTR MaLR 1 355 -20 1595 162 59 101 chr4 97658679 97659086 -104669261 - MLT1B LTR MaLR 0 390 1 180 234 195 26 chr4 97659086 97659163 -104669184 - L2 LINE L2 -894 2420 2331 726 287 32 5 chr4 97659227 97659443 -104668904 - MIR SINE MIR -25 237 16 259 321 86 0 chr4 97659580 97659661 -104668686 - L2 LINE L2 -44 3228 3141 302 317 118 11 chr4 97659796 97659982 -104668365 - L2 LINE L2 -218 3054 2849 342 80 0 0 chr4 97661105 97661155 -104667192 + (TG)n Simple_repeat Simple_repeat 1 50 0 29 0 0 0 chr4 97661253 97661282 -104667065 + AT_rich Low_complexity Low_complexity 1 29 0 192 40 0 0 chr4 97661426 97661451 -104666896 + (CA)n Simple_repeat Simple_repeat 2 26 0 2080 128 42 31 chr4 97661601 97661961 -104666386 - THE1B LTR MaLR 0 364 1 681 202 8 2 chr4 97662791 97663042 -104665305 - MER82 DNA MER2_type -360 293 3 308 290 9 9 chr4 97663066 97663173 -104665174 - HAL1 LINE L1 -865 1642 1536 1922 245 52 14 chr4 97663444 97664030 -104664317 - MER82 DNA MER2_type 0 653 6 926 117 26 13 chr4 97665879 97666025 -104662322 - L1P LINE L1 -790 5356 5206 5820 63 1 42 chr4 97666025 97666701 -104661646 + L1PA8 LINE L1 5392 6033 -139 2402 77 0 0 chr4 97666701 97667001 -104661346 + AluY SINE Alu 3 302 -9 5820 63 1 42 chr4 97667001 97667134 -104661213 + L1PA8 LINE L1 6033 6170 -2 1708 238 136 30 chr4 97667253 97667976 -104660371 - L1ME3A LINE L1 -39 6131 5333 667 266 87 21 chr4 97668001 97668336 -104660011 - L1ME3A LINE L1 -856 5290 4934 198 0 0 0 chr4 97668918 97668940 -104659407 + (T)n Simple_repeat Simple_repeat 1 22 0 192 241 63 51 chr4 97669481 97669560 -104658787 - L2 LINE L2 0 3313 3234 21 0 0 0 chr4 97669888 97669909 -104658438 + AT_rich Low_complexity Low_complexity 1 21 0 1390 30 0 0 chr4 97669984 97670148 -104658199 + L1HS LINE L1 5992 6155 0 26 50 0 0 chr4 97671408 97671448 -104656899 + AT_rich Low_complexity Low_complexity 1 40 0 698 203 58 0 chr4 97672424 97672562 -104655785 - MER20 DNA MER1_type 0 219 74 2488 34 17 0 chr4 97672614 97672909 -104655438 - AluY SINE Alu 0 311 12 655 240 51 2 chr4 97673134 97673328 -104655019 - L1MD3 LINE L1 0 7995 7621 216 0 0 0 chr4 97673333 97673357 -104654990 + (T)n Simple_repeat Simple_repeat 1 24 0 893 215 4 57 chr4 97673485 97673732 -104654615 + AluJo SINE Alu 79 312 0 23 0 0 0 chr4 97674734 97674757 -104653590 + AT_rich Low_complexity Low_complexity 1 23 0 210 37 0 0 chr4 97675023 97675050 -104653297 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1584 191 0 14 chr4 97675838 97676132 -104652215 + AluJb SINE Alu 6 295 -17 212 246 0 18 chr4 97676349 97676406 -104651941 + L2 LINE L2 3175 3230 -83 2170 119 0 0 chr4 97676821 97677124 -104651223 - AluSc SINE Alu -3 306 4 21 36 0 0 chr4 97677200 97677228 -104651119 + AT_rich Low_complexity Low_complexity 1 28 0 52 0 0 0 chr4 97677250 97677302 -104651045 + AT_rich Low_complexity Low_complexity 1 52 0 802 157 0 13 chr4 97677302 97677455 -104650892 - L1MA4 LINE L1 -1 6299 6149 23 33 0 0 chr4 97677730 97677760 -104650587 + AT_rich Low_complexity Low_complexity 1 30 0 212 328 64 32 chr4 97677825 97677950 -104650397 + L2 LINE L2 3173 3301 -12 206 162 0 0 chr4 97679703 97679740 -104648607 + L2 LINE L2 2609 2645 -669 483 286 138 24 chr4 97681677 97681887 -104646460 - MIR SINE MIR -28 234 1 423 0 0 0 chr4 97681908 97681955 -104646392 + (TG)n Simple_repeat Simple_repeat 2 48 0 369 0 0 0 chr4 97683578 97683619 -104644728 + (TG)n Simple_repeat Simple_repeat 2 42 0 22 35 0 0 chr4 97683813 97683842 -104644505 + AT_rich Low_complexity Low_complexity 1 29 0 1866 173 0 7 chr4 97684775 97685082 -104643265 + AluJb SINE Alu 1 305 -7 1310 67 0 0 chr4 97685873 97686038 -104642309 + L1PA4 LINE L1 5828 5992 -163 21 0 0 0 chr4 97686123 97686144 -104642203 + AT_rich Low_complexity Low_complexity 1 21 0 971 185 32 36 chr4 97687301 97687560 -104640787 + MLT1J2 LTR MaLR 1 259 -187 230 322 48 34 chr4 97688893 97689039 -104639308 + L2 LINE L2 2686 2833 -481 456 289 61 49 chr4 97689109 97689372 -104638975 - LTR33 LTR ERVL 0 521 256 336 64 0 0 chr4 97689804 97689851 -104638496 + (CA)n Simple_repeat Simple_repeat 2 48 0 290 169 119 0 chr4 97690541 97690600 -104637747 - tRNA-Glu-GAG tRNA tRNA -9 66 1 226 24 24 48 chr4 97690844 97690851 -104637496 + (TTTTTG)n Simple_repeat Simple_repeat 2 8 -34 207 0 0 0 chr4 97690851 97690874 -104637473 + (TGG)n Simple_repeat Simple_repeat 1 23 0 226 24 24 48 chr4 97690874 97690908 -104637439 + (TTTTTG)n Simple_repeat Simple_repeat 8 42 0 21 0 0 0 chr4 97691036 97691057 -104637290 + AT_rich Low_complexity Low_complexity 1 21 0 705 140 0 0 chr4 97691693 97691807 -104636540 + L1MB1 LINE L1 6054 6167 -1 392 289 50 19 chr4 97692041 97692200 -104636147 - MLT1J1 LTR MaLR -281 165 2 261 303 116 42 chr4 97692473 97692714 -104635633 - L3 LINE CR1 -747 830 572 2103 114 26 7 chr4 97693421 97693727 -104634620 - AluSx SINE Alu 0 312 1 250 389 61 27 chr4 97694309 97694605 -104633742 - L3 LINE CR1 -24 1553 1248 419 315 0 8 chr4 97694636 97694763 -104633584 + AluJb SINE Alu 1 126 -176 498 249 196 16 chr4 97694809 97694998 -104633349 - AluJo SINE Alu -83 229 7 200 327 73 45 chr4 97695498 97695608 -104632739 - MER5A DNA MER1_type -34 155 43 212 239 0 71 chr4 97695743 97695898 -104632449 + A-rich Low_complexity Low_complexity 4 147 0 185 302 38 0 chr4 97696359 97696412 -104631935 - MER5A DNA MER1_type -74 115 61 737 194 57 10 chr4 97696413 97696639 -104631708 - L1PA16 LINE L1 0 6166 5900 1773 202 24 87 chr4 97696722 97696804 -104631543 - MLT1D LTR MaLR 0 505 419 7541 30 2 0 chr4 97696804 97698031 -104630316 - L1PA3 LINE L1 -3 6152 4925 1773 202 24 87 chr4 97698031 97698487 -104629860 - MLT1D LTR MaLR -86 419 1 1760 127 91 4 chr4 97698840 97699115 -104629232 - AluSx SINE Alu -11 301 3 1434 134 183 0 chr4 97699696 97699942 -104628405 - AluSx SINE Alu -21 291 1 226 351 191 22 chr4 97700032 97700527 -104627820 + L2 LINE L2 2726 3313 0 2260 105 0 3 chr4 97700773 97701078 -104627269 - AluSg SINE Alu -6 304 1 319 264 0 23 chr4 97701101 97701188 -104627159 - MER5B DNA MER1_type -93 85 1 24 0 0 0 chr4 97703850 97703874 -104624473 + AT_rich Low_complexity Low_complexity 1 24 0 208 237 34 17 chr4 97704352 97704411 -104623936 - L2 LINE L2 -243 3070 3011 1754 142 59 9 chr4 97704450 97704788 -104623559 + THE1C LTR MaLR 1 355 -20 1595 162 59 101 chr4 97704800 97705207 -104623140 - MLT1B LTR MaLR 0 390 1 180 234 195 26 chr4 97705207 97705284 -104623063 - L2 LINE L2 -894 2420 2331 726 287 32 5 chr4 97705348 97705564 -104622783 - MIR SINE MIR -25 237 16 259 321 86 0 chr4 97705701 97705782 -104622565 - L2 LINE L2 -44 3228 3141 302 317 118 11 chr4 97705917 97706103 -104622244 - L2 LINE L2 -218 3054 2849 336 64 0 0 chr4 97707226 97707273 -104621074 + (TG)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chr4 97707365 97707393 -104620954 + AT_rich Low_complexity Low_complexity 1 28 0 483 351 91 19 chr4 97707865 97708184 -104620163 - LTR16A LTR ERVL -6 444 103 220 385 95 40 chr4 97709057 97709205 -104619142 + MIR3 SINE MIR 2 157 -51 309 246 119 40 chr4 97709456 97709598 -104618749 + L1M4 LINE L1 4254 4383 -1763 282 56 0 0 chr4 97709598 97709634 -104618713 + (CA)n Simple_repeat Simple_repeat 1 36 0 309 246 119 40 chr4 97709634 97709768 -104618579 + L1M4 LINE L1 4383 4552 -1594 723 246 82 48 chr4 97710203 97710556 -104617791 + LTR52 LTR ERVL 3 367 -54 21 57 0 0 chr4 97710781 97710816 -104617531 + AT_rich Low_complexity Low_complexity 1 35 0 1084 243 111 22 chr4 97711270 97711632 -104616715 + MSTD LTR MaLR 1 394 -2 5484 248 47 58 chr4 97711636 97712245 -104616102 + MSTD-int LTR MaLR 2 616 -1119 1846 124 0 4 chr4 97712245 97712504 -104615843 + AluSg SINE Alu 4 261 -49 5484 248 47 58 chr4 97712504 97713647 -104614700 + MSTD-int LTR MaLR 616 1735 0 1038 242 128 25 chr4 97713647 97714006 -104614341 + MSTD LTR MaLR 1 396 0 1795 157 29 13 chr4 97717063 97717369 -104610978 - AluJo SINE Alu -1 311 1 182 289 0 0 chr4 97717371 97717416 -104610931 + L3b LINE CR1 1447 1491 -92 722 294 23 23 chr4 97718252 97718470 -104609877 - MIR SINE MIR 0 262 45 9125 145 29 8 chr4 97718907 97720437 -104607910 - Tigger1 DNA MER2_type -77 2341 781 346 333 26 0 chr4 97721749 97721863 -104606484 - L2 LINE L2 -5 3308 3192 241 373 68 0 chr4 97722303 97722421 -104605926 - MIR SINE MIR -94 168 43 307 324 10 39 chr4 97722546 97722648 -104605699 - L2 LINE L2 0 3272 3174 228 357 57 0 chr4 97723681 97723751 -104604596 + L2 LINE L2 3240 3313 0 22 56 0 0 chr4 97723865 97723901 -104604446 + AT_rich Low_complexity Low_complexity 1 36 0 280 176 29 0 chr4 97723938 97724006 -104604341 + CT-rich Low_complexity Low_complexity 2 71 0 294 29 0 0 chr4 97724712 97724747 -104603600 + (TG)n Simple_repeat Simple_repeat 1 35 0 1419 151 18 115 chr4 97724805 97725179 -104603168 + AluSq SINE Alu 2 343 0 323 309 0 12 chr4 97725241 97725322 -104603025 - L2 LINE L2 0 3313 3234 294 392 0 0 chr4 97725430 97725560 -104602787 - L2 LINE L2 -312 3001 2872 21 0 0 0 chr4 97725800 97725821 -104602526 + AT_rich Low_complexity Low_complexity 1 21 0 401 294 73 7 chr4 97726079 97726215 -104602132 + MIR SINE MIR 17 161 -101 774 190 92 0 chr4 97726342 97726505 -104601842 + MER5A DNA MER1_type 2 179 -10 882 289 139 15 chr4 97727406 97727745 -104600602 + LTR40a LTR ERVL 139 519 0 1317 248 52 6 chr4 97727913 97728260 -104600087 + MLT1A1 LTR MaLR 3 365 0 1245 188 132 4 chr4 97728301 97728567 -104599780 - AluJb SINE Alu -2 300 1 682 164 29 14 chr4 97728745 97728885 -104599462 + MER5A DNA MER1_type 47 188 -1 203 241 24 84 chr4 97729420 97729503 -104598844 - L2 LINE L2 0 3313 3236 230 357 66 28 chr4 97729594 97729807 -104598540 - MIR SINE MIR -31 231 11 207 0 0 0 chr4 97730388 97730411 -104597936 + (A)n Simple_repeat Simple_repeat 1 23 0 2140 119 0 0 chr4 97730482 97730784 -104597563 + AluSg SINE Alu 1 302 -8 5533 43 9 3 chr4 97731631 97732322 -104596025 - L1PA6 LINE L1 -4 6150 5456 362 273 87 68 chr4 97732344 97732711 -104595636 - HAL1 LINE L1 -1 2506 2133 1830 186 25 25 chr4 97732711 97733076 -104595271 - MLT1A1 LTR MaLR 0 365 1 6524 208 72 38 chr4 97733076 97733154 -104595193 - MLT1A1-int LTR MaLR 0 1735 1661 1858 162 7 10 chr4 97733154 97733457 -104594890 - AluSx SINE Alu -9 303 2 6524 208 72 38 chr4 97733457 97735056 -104593291 - MLT1A1-int LTR MaLR -74 1661 1 1746 205 8 24 chr4 97735056 97735427 -104592920 - MLT1A1 LTR MaLR 0 365 1 388 0 39 0 chr4 97735619 97735671 -104592676 + (CA)n Simple_repeat Simple_repeat 1 54 0 21 36 0 0 chr4 97735905 97735933 -104592414 + AT_rich Low_complexity Low_complexity 1 28 0 23 78 0 0 chr4 97736737 97736788 -104591559 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr4 97736958 97736980 -104591367 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 97737318 97737346 -104591001 + AT_rich Low_complexity Low_complexity 1 28 0 25 75 0 0 chr4 97737359 97737412 -104590935 + AT_rich Low_complexity Low_complexity 1 53 0 2164 100 7 23 chr4 97738317 97738627 -104589720 + AluSq SINE Alu 3 307 -6 2809 64 13 11 chr4 97739138 97739512 -104588835 + THE1C LTR MaLR 1 375 0 242 276 41 51 chr4 97740429 97740527 -104587820 + L2 LINE L2 3155 3251 -21 864 206 27 0 chr4 97740604 97740788 -104587559 + MER5A DNA MER1_type 1 189 0 953 270 29 22 chr4 97741034 97741345 -104587002 - LTR16C LTR ERVL 0 491 179 242 231 0 106 chr4 97743024 97743128 -104585219 + MIR SINE MIR 166 258 -4 307 320 163 6 chr4 97743240 97743412 -104584935 - MIR SINE MIR -18 244 46 26 0 0 0 chr4 97743573 97743599 -104584748 + AT_rich Low_complexity Low_complexity 1 26 0 685 296 161 23 chr4 97743757 97744142 -104584205 - L2 LINE L2 -20 3293 2856 2550 11 0 0 chr4 97745901 97746216 -104582131 + AluY SINE Alu 1 315 0 298 323 199 0 chr4 97746582 97746743 -104581604 - MIR SINE MIR -65 197 5 21 57 0 0 chr4 97746771 97746806 -104581541 + AT_rich Low_complexity Low_complexity 1 35 0 305 333 10 0 chr4 97746810 97746909 -104581438 - MER103 DNA DNA -64 102 3 4176 29 0 0 chr4 97748238 97748729 -104579618 - L1P2 LINE L1 -345 5810 5320 569 68 0 0 chr4 97748729 97748844 -104579503 + L1PA4 LINE L1 6065 6179 0 1834 160 9 6 chr4 97749721 97750059 -104578288 + L1MA3 LINE L1 5967 6305 0 272 226 0 32 chr4 97750059 97750121 -104578226 + MIR SINE MIR 175 234 -28 539 346 95 33 chr4 97750248 97750817 -104577530 - L2 LINE L2 -555 2759 2156 2143 209 47 8 chr4 97751142 97751653 -104576694 - MER45B DNA AcHobo 0 1040 510 1205 236 22 18 chr4 97751643 97751918 -104576429 - MER45B DNA AcHobo -700 340 65 * 430 257 257 0 chr4 97754706 97754842 -104573505 + MER5A DNA MER1_type 14 184 -5 268 227 10 93 chr4 97757199 97757290 -104571057 + L1ME4a LINE L1 5977 6060 -56 497 57 0 14 chr4 97757290 97757360 -104570987 + (TA)n Simple_repeat Simple_repeat 1 69 0 788 157 0 0 chr4 97757379 97757494 -104570853 - FLAM_C SINE Alu -15 118 4 632 289 96 17 chr4 97758857 97759096 -104569251 + MIR SINE MIR 2 259 -3 251 319 203 26 chr4 97761152 97761462 -104566885 - L3 LINE CR1 -117 1460 1096 713 223 37 34 chr4 97761519 97761788 -104566559 + L1MC5 LINE L1 7473 7742 -219 1663 172 7 33 chr4 97761845 97762148 -104566199 + AluSx SINE Alu 1 295 -17 531 160 0 0 chr4 97762148 97762242 -104566105 + GA-rich Low_complexity Low_complexity 1 94 0 28 29 0 0 chr4 97762481 97762516 -104565831 + AT_rich Low_complexity Low_complexity 1 35 0 1772 170 0 7 chr4 97762831 97763125 -104565222 - AluSq SINE Alu -21 292 1 1159 305 150 26 chr4 97763451 97764319 -104564028 + L2 LINE L2 2243 3236 -77 2165 112 0 3 chr4 97765052 97765357 -104562990 + AluSg SINE Alu 1 304 -6 252 143 0 0 chr4 97766154 97766196 -104562151 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 1540 167 42 11 chr4 97766378 97766665 -104561682 - AluJo SINE Alu -16 296 1 2110 223 58 10 chr4 97766683 97767181 -104561166 - L1MD2 LINE L1 -2 6357 5836 1160 215 111 20 chr4 97767224 97767577 -104560770 + MLT1B LTR MaLR 6 390 0 1256 224 37 22 chr4 97767577 97767899 -104560448 - L1MD2 LINE L1 -565 5794 5468 2013 132 0 0 chr4 97767902 97768211 -104560136 - AluSx SINE Alu 0 310 2 506 274 118 28 chr4 97770057 97770269 -104558078 - MIR SINE MIR -1 261 31 22 0 0 0 chr4 97770520 97770542 -104557805 + AT_rich Low_complexity Low_complexity 1 22 0 1435 220 30 7 chr4 97771124 97771429 -104556918 - AluJo SINE Alu 0 312 1 21 0 0 0 chr4 97772420 97772441 -104555906 + AT_rich Low_complexity Low_complexity 1 21 0 448 321 84 9 chr4 97773018 97773233 -104555114 + MIR SINE MIR 1 231 -31 184 400 20 0 chr4 97773734 97773834 -104554513 - MIR SINE MIR -108 154 53 191 59 0 29 chr4 97773858 97773892 -104554455 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 5663 141 18 8 chr4 97773896 97775342 -104553005 - L1PA13 LINE L1 -19 6144 4686 21 36 0 0 chr4 97775509 97775537 -104552810 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 97775900 97775921 -104552426 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr4 97776108 97776144 -104552203 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr4 97776164 97776201 -104552146 + AT_rich Low_complexity Low_complexity 1 37 0 2235 110 7 0 chr4 97777550 97777858 -104550489 - AluSq SINE Alu -3 310 1 260 341 62 8 chr4 97779791 97779920 -104548427 + MIR SINE MIR 126 261 -1 263 160 0 0 chr4 97781060 97781110 -104547237 + MER4-int LTR ERV1 1112 1161 -5437 1607 171 7 37 chr4 97783005 97783304 -104545043 + AluJb SINE Alu 1 290 -22 2084 140 77 3 chr4 97783508 97783857 -104544490 - THE1C LTR MaLR 0 375 1 349 287 158 29 chr4 97784932 97785141 -104543206 + L3 LINE CR1 259 494 -1083 1012 319 154 10 chr4 97785560 97786172 -104542175 + L3 LINE CR1 585 1284 -293 184 373 0 0 chr4 97786857 97786924 -104541423 - L2 LINE L2 -1 3312 3246 27 0 0 0 chr4 97787232 97787259 -104541088 + AT_rich Low_complexity Low_complexity 1 27 0 970 50 0 0 chr4 97787259 97787380 -104540967 - L1PA5 LINE L1 -8 6146 6026 21 36 0 0 chr4 97787659 97787687 -104540660 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 97787904 97787932 -104540415 + AT_rich Low_complexity Low_complexity 1 28 0 223 146 24 0 chr4 97788134 97788175 -104540172 - L2 LINE L2 0 3313 3272 182 324 113 78 chr4 97788366 97788597 -104539750 - L2 LINE L2 -341 2973 2751 2199 119 0 0 chr4 97788597 97788926 -104539421 - AluSx SINE Alu 0 329 1 182 324 113 78 chr4 97788926 97789215 -104539132 - L2 LINE L2 -563 2751 2434 211 250 0 0 chr4 97789817 97789861 -104538486 + (TA)n Simple_repeat Simple_repeat 1 44 0 22 56 0 0 chr4 97790509 97790545 -104537802 + AT_rich Low_complexity Low_complexity 1 36 0 566 319 106 0 chr4 97792218 97792444 -104535903 - MIR SINE MIR -1 261 12 23 68 0 0 chr4 97792539 97792583 -104535764 + AT_rich Low_complexity Low_complexity 1 44 0 256 333 83 23 chr4 97793353 97793485 -104534862 + MIR3 SINE MIR 44 183 -25 25 51 0 0 chr4 97794044 97794083 -104534264 + AT_rich Low_complexity Low_complexity 1 39 0 331 168 0 58 chr4 97794409 97794599 -104533748 + (TA)n Simple_repeat Simple_repeat 2 180 0 342 45 0 0 chr4 97794612 97794656 -104533691 + (TCTA)n Simple_repeat Simple_repeat 4 47 0 844 293 97 31 chr4 97795151 97796092 -104532255 - L1ME3A LINE L1 -222 5948 4944 332 241 64 49 chr4 97796152 97796416 -104531931 - L1ME3 LINE L1 -77 6085 5782 332 274 102 10 chr4 97796422 97796619 -104531728 - L1ME3 LINE L1 -1769 4377 4163 629 354 51 58 chr4 97797145 97797891 -104530456 - L2 LINE L2 -1598 1716 976 206 198 0 66 chr4 97799774 97799956 -104528391 + (TTAA)n Simple_repeat Simple_repeat 4 173 0 382 289 134 0 chr4 97800381 97800523 -104527824 + L2 LINE L2 3153 3313 0 400 305 20 69 chr4 97800912 97801115 -104527232 + MIR SINE MIR 12 204 -58 2372 100 0 0 chr4 97801590 97801901 -104526446 + AluY SINE Alu 1 311 0 2336 169 16 112 chr4 97802510 97803084 -104525263 + MLT2B1 LTR ERVL 1 519 -1 3729 103 0 4 chr4 97804356 97804897 -104523450 - L1P LINE L1 -1193 4953 4415 6871 63 8 0 chr4 97804897 97805784 -104522563 + L1PA7 LINE L1 5254 6150 -4 458 182 36 6 chr4 97805921 97806086 -104522261 + (TA)n Simple_repeat Simple_repeat 1 170 0 3610 104 69 7 chr4 97806788 97807356 -104520991 - L1PA12 LINE L1 -1 6167 5565 4425 166 12 9 chr4 97807358 97808172 -104520175 - L1PA12 LINE L1 -1000 5146 4330 2316 80 0 22 chr4 97808252 97808563 -104519784 + AluY SINE Alu 1 304 -7 25 99 0 0 chr4 97808691 97808772 -104519575 + AT_rich Low_complexity Low_complexity 1 81 0 2012 166 96 28 chr4 97810745 97811173 -104517174 + MSTB2 LTR MaLR 1 457 0 24 32 0 0 chr4 97813182 97813213 -104515134 + AT_rich Low_complexity Low_complexity 1 31 0 284 158 18 0 chr4 97813227 97813284 -104515063 + (TA)n Simple_repeat Simple_repeat 2 59 0 261 0 0 0 chr4 97813284 97813313 -104515034 + (CA)n Simple_repeat Simple_repeat 2 30 0 181 323 92 28 chr4 97813505 97813722 -104514625 + L3 LINE CR1 780 1010 -567 257 254 0 15 chr4 97814707 97814774 -104513573 + L1MA10 LINE L1 6203 6268 -66 46 33 0 0 chr4 97815676 97815736 -104512611 + AT_rich Low_complexity Low_complexity 1 60 0 262 373 0 37 chr4 97816394 97816528 -104511819 - MER5A DNA MER1_type -6 183 55 314 163 198 0 chr4 97817061 97817147 -104511200 - MER58C DNA MER1_type -1 214 112 203 143 0 24 chr4 97817148 97817190 -104511157 + (TATG)n Simple_repeat Simple_repeat 2 42 0 225 267 163 12 chr4 97817193 97817279 -104511068 - MER58C DNA MER1_type -116 99 1 33 43 0 0 chr4 97817334 97817381 -104510966 + AT_rich Low_complexity Low_complexity 1 47 0 304 85 24 37 chr4 97819995 97820077 -104508270 + (TA)n Simple_repeat Simple_repeat 1 81 0 2221 104 0 0 chr4 97820077 97820366 -104507981 - AluSc SINE Alu -20 289 1 27 0 0 0 chr4 97820371 97820398 -104507949 + AT_rich Low_complexity Low_complexity 1 27 0 4829 156 31 4 chr4 97820726 97821567 -104506780 - MER6 DNA MER2_type -1 864 1 896 71 0 9 chr4 97821869 97821982 -104506365 - AluSq/x SINE Alu -183 130 19 1463 145 34 7 chr4 97822189 97822458 -104505889 - L1PB4 LINE L1 -112 6044 5769 911 9 0 0 chr4 97822476 97822581 -104505766 - L1PA2 LINE L1 -2 6153 6049 771 345 70 46 chr4 97822674 97823547 -104504800 - L1PA15-16 LINE L1 -5951 898 5 806 184 70 35 chr4 97823576 97823777 -104504570 - MLT1A2 LTR MaLR -166 208 1 426 257 86 40 chr4 97824469 97824621 -104503726 - MER5B DNA MER1_type 0 178 20 474 18 0 0 chr4 97825492 97825547 -104502800 + (CA)n Simple_repeat Simple_repeat 1 55 0 2280 122 0 0 chr4 97825904 97826216 -104502131 - AluSx SINE Alu 0 312 1 185 253 69 46 chr4 97827188 97827275 -104501072 - MIR SINE MIR -56 206 118 478 261 82 39 chr4 97827421 97827628 -104500719 - L2 LINE L2 0 3313 3098 538 274 21 103 chr4 97827727 97828067 -104500280 - L2 LINE L2 -414 2900 2589 357 247 59 96 chr4 97828276 97828547 -104499800 + L2 LINE L2 3049 3309 -4 955 253 74 68 chr4 97828728 97829234 -104499113 + MLT1E2 LTR MaLR 1 411 -94 4124 211 40 21 chr4 97830175 97830712 -104497635 - L1MB7 LINE L1 -2 6182 5657 222 37 0 0 chr4 97830712 97830739 -104497608 + (TA)n Simple_repeat Simple_repeat 1 27 0 4124 211 40 21 chr4 97830739 97832066 -104496281 - L1MB7 LINE L1 -527 5657 4289 24 32 0 0 chr4 97834139 97834170 -104494177 + AT_rich Low_complexity Low_complexity 1 31 0 195 45 0 68 chr4 97834229 97834273 -104494074 + (TCTCCC)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr4 97834359 97834380 -104493967 + AT_rich Low_complexity Low_complexity 1 21 0 31 58 0 0 chr4 97834501 97834553 -104493794 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr4 97835780 97835801 -104492546 + AT_rich Low_complexity Low_complexity 1 21 0 562 238 69 144 chr4 97836151 97836772 -104491575 - L2 LINE L2 0 3313 2737 1704 242 18 10 chr4 97837584 97837977 -104490370 - MSTD LTR MaLR 0 396 1 2188 154 51 10 chr4 97837983 97838392 -104489955 - MSTB LTR MaLR 0 426 1 254 300 36 43 chr4 97838697 97838837 -104489510 + MER5A DNA MER1_type 9 147 -42 1455 81 5 9 chr4 97839597 97839808 -104488539 + L1PA13 LINE L1 5948 6157 -6 36 0 0 0 chr4 97839808 97839844 -104488503 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr4 97839973 97839996 -104488351 + AT_rich Low_complexity Low_complexity 1 23 0 233 231 19 0 chr4 97840164 97840216 -104488131 + L2 LINE L2 3261 3313 0 369 75 0 0 chr4 97841960 97842013 -104486334 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr4 97844854 97844875 -104483472 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 97845659 97845687 -104482660 + AT_rich Low_complexity Low_complexity 1 28 0 2333 73 13 0 chr4 97846161 97846461 -104481886 - AluY SINE Alu -7 304 1 26 0 0 0 chr4 97846471 97846497 -104481850 + AT_rich Low_complexity Low_complexity 1 26 0 260 309 175 36 chr4 97846576 97846770 -104481577 + MIR SINE MIR 21 241 -21 1063 136 35 0 chr4 97847071 97847269 -104481078 - L1MA8 LINE L1 0 6291 6087 1472 294 73 76 chr4 97849087 97849862 -104478485 - L2 LINE L2 0 3313 2553 2098 105 0 7 chr4 97849862 97850147 -104478200 - AluSx SINE Alu -27 285 3 1472 294 73 76 chr4 97850147 97850686 -104477661 - L2 LINE L2 -760 2553 2014 645 267 90 37 chr4 97850687 97851138 -104477209 - MLT2C1 LTR ERVL 0 464 1 245 274 307 28 chr4 97851155 97851263 -104477084 - L2 LINE L2 -1322 1992 1915 1009 238 135 53 chr4 97851263 97851730 -104476617 - MLT1D LTR MaLR 0 505 1 245 274 307 28 chr4 97851730 97851833 -104476514 - L2 LINE L2 -1399 1915 1722 266 226 16 16 chr4 97852504 97852566 -104475781 + L2 LINE L2 3252 3313 0 265 337 134 16 chr4 97852813 97853000 -104475347 + MIR SINE MIR 27 235 -27 261 343 47 76 chr4 97853236 97853511 -104474836 + L2 LINE L2 2210 2467 -847 1566 204 22 30 chr4 97853511 97853879 -104474468 - MLT1A1 LTR MaLR 0 365 1 261 343 47 76 chr4 97853879 97854075 -104474272 + L2 LINE L2 2467 2667 -647 281 284 39 0 chr4 97854186 97854288 -104474059 - MER112 DNA MER1_type -7 253 148 415 318 9 0 chr4 97854321 97854431 -104473916 - LTR16C LTR ERVL -110 381 271 1751 37 0 5 chr4 97854777 97854992 -104473355 + L1PA4 LINE L1 5931 6144 -11 771 221 7 0 chr4 97855201 97855346 -104473001 + MER2 DNA MER2_type 7 152 -193 539 191 36 9 chr4 97855420 97855530 -104472817 - FLAM_A SINE Alu -29 113 1 243 297 16 16 chr4 97855566 97855630 -104472717 + MER2 DNA MER2_type 280 343 -2 1186 185 45 35 chr4 97855634 97855920 -104472427 - Charlie1a DNA MER1_type -1127 328 40 3995 42 17 0 chr4 97855951 97856433 -104471914 - LTR2B LTR ERV1 0 490 1 2241 109 125 13 chr4 97858186 97858571 -104469776 - MSTA LTR MaLR 0 428 1 204 224 0 0 chr4 97858987 97859054 -104469293 + (TCCA)n Simple_repeat Simple_repeat 3 69 0 25 0 0 0 chr4 97859364 97859389 -104468958 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr4 97859547 97859570 -104468777 + (TA)n Simple_repeat Simple_repeat 1 23 0 2334 87 0 19 chr4 97862208 97862519 -104465828 + AluSg SINE Alu 1 305 -5 21 0 0 0 chr4 97862767 97862788 -104465559 + AT_rich Low_complexity Low_complexity 1 21 0 507 267 11 89 chr4 97864263 97864544 -104463803 + L2 LINE L2 3055 3313 0 1795 166 3 13 chr4 97864546 97864875 -104463472 + AluSx SINE Alu 1 312 0 1985 109 3 38 chr4 97865531 97865849 -104462498 + AluSx SINE Alu 1 308 0 469 257 75 27 chr4 97865919 97866106 -104462241 - MER110 LTR ERV1 -7 484 289 235 223 209 65 chr4 97866255 97866394 -104461953 - L2 LINE L2 -981 2333 2175 1027 276 42 32 chr4 97866409 97866811 -104461536 - LTR38 LTR ERV1 -14 542 137 476 324 121 30 chr4 97866857 97867228 -104461119 - L2 LINE L2 -1108 2206 1802 2209 119 3 0 chr4 97869316 97869626 -104458721 + AluSx SINE Alu 1 311 -1 273 342 62 48 chr4 97869641 97869963 -104458384 + L2 LINE L2 2771 3109 -204 1094 188 18 118 chr4 97869970 97870231 -104458116 - L1MA9 LINE L1 -6 6306 6097 1564 189 35 35 chr4 97870231 97870606 -104457741 - THE1C LTR MaLR 0 375 1 1094 188 18 118 chr4 97870606 97870744 -104457603 - L1MA9 LINE L1 -215 6097 5947 637 220 28 110 chr4 97870745 97871000 -104457347 + L2 LINE L2 3080 3313 0 1017 72 17 28 chr4 97871544 97871725 -104456622 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 378 0 0 0 chr4 97873297 97873339 -104455008 + (TA)n Simple_repeat Simple_repeat 2 43 0 306 134 18 0 chr4 97873942 97874006 -104454341 - L1MB8 LINE L1 0 6184 6118 488 297 24 42 chr4 97874233 97874445 -104453902 + MER63A DNA MER1_type 2 209 -1 2031 208 88 47 chr4 97874754 97875359 -104452988 + MLT1E2 LTR MaLR 3 626 0 308 278 52 35 chr4 97875694 97875867 -104452480 + MER5B DNA MER1_type 2 177 -1 386 308 77 0 chr4 97876190 97876320 -104452027 - LTR16A LTR ERVL 0 450 311 259 359 23 16 chr4 97876418 97876546 -104451801 - LTR16A LTR ERVL -300 150 22 264 253 27 13 chr4 97876959 97877034 -104451313 + L2 LINE L2 1972 2047 -1267 230 287 35 11 chr4 97877135 97877222 -104451125 + L2 LINE L2 1972 2060 -1254 33 25 0 0 chr4 97877401 97877441 -104450906 + AT_rich Low_complexity Low_complexity 1 40 0 18707 59 5 0 chr4 97877541 97880749 -104447598 - L1PA5 LINE L1 -2 6152 2932 724 276 49 69 chr4 97880781 97881430 -104446917 - L1MEd LINE L1 -4864 1255 620 1245 294 42 73 chr4 97882460 97883020 -104445327 + L2 LINE L2 2023 2564 -750 1985 145 30 16 chr4 97883020 97883385 -104444962 + L1PB4 LINE L1 5781 6150 -6 1245 294 42 73 chr4 97883385 97883443 -104444904 + L2 LINE L2 2564 2622 -692 307 51 0 0 chr4 97883524 97883563 -104444784 + AluSp SINE Alu 1 39 -261 460 92 0 0 chr4 97883563 97883639 -104444708 + Alu SINE Alu 234 309 -1 327 350 90 6 chr4 97883664 97883841 -104444506 + L2 LINE L2 2697 2888 -426 367 346 71 32 chr4 97883867 97884147 -104444200 + L2 LINE L2 2948 3238 -75 531 31 0 0 chr4 97884179 97884244 -104444103 + (TGGA)n Simple_repeat Simple_repeat 4 68 0 231 294 35 35 chr4 97884456 97884541 -104443806 + L2 LINE L2 3229 3313 0 303 335 26 36 chr4 97884561 97884755 -104443592 - L2 LINE L2 -1225 2089 1898 22 0 0 0 chr4 97885497 97885519 -104442828 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr4 97886049 97886092 -104442255 + AT_rich Low_complexity Low_complexity 1 43 0 369 264 11 0 chr4 97886365 97886456 -104441891 - LTR16B LTR ERVL -365 99 8 750 288 43 105 chr4 97886456 97887155 -104441192 + L2 LINE L2 2654 3313 0 191 309 36 0 chr4 97887439 97887494 -104440853 + L2 LINE L2 2739 2795 -519 420 20 0 0 chr4 97887744 97887793 -104440554 + (TG)n Simple_repeat Simple_repeat 1 49 0 234 0 0 0 chr4 97887792 97887818 -104440529 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 235 229 29 29 chr4 97887919 97887989 -104440358 + MLT1K LTR MaLR 507 576 -12 379 315 203 0 chr4 97888696 97888839 -104439508 - MER5A DNA MER1_type -6 183 12 2055 82 0 8 chr4 97890177 97890444 -104437903 + AluSp SINE Alu 39 303 -10 21 71 0 0 chr4 97891093 97891135 -104437212 + AT_rich Low_complexity Low_complexity 1 42 0 1642 155 40 33 chr4 97891172 97891476 -104436871 - AluJb SINE Alu -3 309 4 493 323 37 15 chr4 97891940 97892204 -104436143 - L1MC/D LINE L1 -511 5655 5482 30 77 0 0 chr4 97892356 97892421 -104435926 + AT_rich Low_complexity Low_complexity 1 65 0 1780 236 70 60 chr4 97892728 97893228 -104435119 - LTR40a LTR ERVL -12 507 3 2273 254 56 5 chr4 97893532 97894177 -104434170 + MER63C DNA MER1_type 253 930 0 276 286 61 0 chr4 97894179 97894277 -104434070 - HAL1 LINE L1 -159 2348 2245 1191 220 81 7 chr4 97894300 97894573 -104433774 + MLT1F LTR MaLR 1 293 -249 252 226 68 75 chr4 97894584 97894674 -104433673 - HAL1b LINE L1 -875 473 383 2023 184 32 19 chr4 97894674 97895135 -104433212 + MLT1C LTR MaLR 1 467 0 252 226 68 75 chr4 97895135 97895177 -104433170 - HAL1b LINE L1 -965 383 342 2033 120 29 47 chr4 97895177 97895559 -104432788 - THE1C LTR MaLR 0 375 1 411 294 112 69 chr4 97895560 97896137 -104432210 - HAL1 LINE L1 -1075 1432 811 305 360 59 20 chr4 97896316 97896469 -104431878 - HAL1 LINE L1 -1898 609 451 1894 145 7 3 chr4 97896820 97897116 -104431231 - AluSx SINE Alu -15 297 1 269 320 65 12 chr4 97897206 97897360 -104430987 + MIR3 SINE MIR 38 199 -9 265 373 115 38 chr4 97897539 97898124 -104430223 + L2 LINE L2 2652 3272 0 351 0 0 0 chr4 97898635 97898674 -104429673 + (TG)n Simple_repeat Simple_repeat 2 40 0 28 29 0 0 chr4 97898707 97898742 -104429605 + AT_rich Low_complexity Low_complexity 1 35 0 5134 159 27 40 chr4 97899543 97900099 -104428248 - L1MA9 LINE L1 -6 6306 5744 360 0 0 0 chr4 97900099 97900139 -104428208 + (TG)n Simple_repeat Simple_repeat 2 41 0 5134 159 27 40 chr4 97900139 97901288 -104427059 - L1MA9 LINE L1 -568 5744 4621 680 257 39 23 chr4 97902710 97902967 -104425380 - MIR SINE MIR 0 262 2 180 0 0 0 chr4 97904078 97904098 -104424249 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 236 330 42 17 chr4 97904682 97904800 -104423547 - MIR3 SINE MIR -2 206 86 193 300 217 8 chr4 97905776 97905896 -104422451 - MIR SINE MIR -73 189 45 2375 104 31 6 chr4 97905941 97906296 -104422051 - THE1B LTR MaLR 0 364 1 399 344 97 21 chr4 97906772 97906958 -104421389 - MIR SINE MIR -32 230 31 277 308 103 8 chr4 97907097 97907214 -104421133 - MIR SINE MIR -67 195 68 567 276 35 11 chr4 97907561 97907735 -104420612 - MIR SINE MIR -57 205 28 186 71 0 0 chr4 97907901 97907929 -104420418 + (TTG)n Simple_repeat Simple_repeat 3 30 0 255 103 0 0 chr4 97909122 97909161 -104419186 + (CA)n Simple_repeat Simple_repeat 2 40 0 316 314 39 32 chr4 97909161 97909317 -104419030 - MIR SINE MIR -32 230 74 197 277 96 60 chr4 97909292 97909375 -104418972 - L3 LINE CR1 -1165 412 327 * 21 57 0 0 chr4 97909387 97909422 -104418925 + AT_rich Low_complexity Low_complexity 1 35 0 396 0 0 0 chr4 97909789 97909833 -104418514 + (TG)n Simple_repeat Simple_repeat 2 45 0 221 57 29 0 chr4 97909839 97909874 -104418473 + (TATATG)n Simple_repeat Simple_repeat 5 40 0 240 118 44 0 chr4 97909890 97909958 -104418389 + (TA)n Simple_repeat Simple_repeat 1 71 0 295 319 0 18 chr4 97910164 97910275 -104418072 - MLT1I LTR MaLR -49 360 252 722 328 78 30 chr4 97910275 97910800 -104417547 - MLT1H1 LTR MaLR 0 555 6 385 312 35 45 chr4 97910801 97911000 -104417347 - MLT1I LTR MaLR -154 255 59 216 241 37 0 chr4 97911265 97911319 -104417028 - L2 LINE L2 -1 3271 3216 325 312 64 8 chr4 97912241 97912366 -104415981 - L1MC/D LINE L1 -2233 6370 6239 25 0 0 0 chr4 97912471 97912496 -104415851 + AT_rich Low_complexity Low_complexity 1 25 0 354 284 97 13 chr4 97912510 97912665 -104415682 - L1MC/D LINE L1 -890 6051 5884 474 308 110 29 chr4 97912993 97913266 -104415081 - L1MC/D LINE L1 -1331 5610 5316 445 261 144 69 chr4 97914081 97914372 -104413975 - MLT1H LTR MaLR -42 507 195 2841 84 46 2 chr4 97914408 97914823 -104413524 - L1MA1 LINE L1 -3 6299 5867 807 297 96 60 chr4 97915231 97916173 -104412174 - L1MC/D LINE L1 -2857 4084 3110 748 265 52 44 chr4 97916185 97916434 -104411913 - MIR SINE MIR -1 261 11 1841 256 75 33 chr4 97916507 97916578 -104411769 - L1MCc LINE L1 -4894 1529 1462 297 0 0 0 chr4 97916578 97916611 -104411736 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1841 256 75 33 chr4 97916611 97916935 -104411412 - L1MCc LINE L1 -4961 1462 1153 1243 94 25 25 chr4 97916935 97917136 -104411211 - L1PA10 LINE L1 0 6168 5968 1841 256 75 33 chr4 97917136 97917544 -104410803 - L1MCc LINE L1 -5270 1153 799 576 325 45 49 chr4 97917682 97917928 -104410419 - L1MCc LINE L1 -5842 581 337 559 285 26 42 chr4 97917980 97918048 -104410299 - L1MCc LINE L1 -6090 333 265 1936 159 10 0 chr4 97918048 97918344 -104410003 + AluSx SINE Alu 1 299 -13 559 285 26 42 chr4 97918344 97918584 -104409763 - L1MCc LINE L1 -6158 265 30 383 281 75 100 chr4 97918984 97919476 -104408871 - HAL1b LINE L1 -613 735 256 1421 228 0 35 chr4 97919577 97919889 -104408458 - AluJo SINE Alu -1 301 1 8696 53 2 2 chr4 97920886 97921957 -104406390 + MER11C LTR ERVK 1 1071 0 21 0 0 0 chr4 97922033 97922054 -104406293 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr4 97922295 97922328 -104406019 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr4 97922532 97922561 -104405786 + AT_rich Low_complexity Low_complexity 1 29 0 435 309 51 60 chr4 97922618 97922954 -104405393 + L3 LINE CR1 280 612 -965 1546 64 0 10 chr4 97923517 97923721 -104404626 - L1PA5 LINE L1 -4 6150 5949 181 226 119 83 chr4 97924040 97924124 -104404223 - L2 LINE L2 -2 3311 3225 1140 256 148 26 chr4 97924147 97924572 -104403775 - MLT1D LTR MaLR -28 477 1 1673 190 3 0 chr4 97924604 97924899 -104403448 - AluJo SINE Alu -16 296 1 915 106 0 0 chr4 97925475 97925626 -104402721 + (CA)n Simple_repeat Simple_repeat 2 152 0 227 391 75 69 chr4 97925686 97926021 -104402326 + L2 LINE L2 2932 3268 -4 624 305 54 66 chr4 97926283 97926725 -104401622 - MLT1K LTR MaLR -2 586 150 23 0 0 0 chr4 97926751 97926774 -104401573 + AT_rich Low_complexity Low_complexity 1 23 0 2339 101 0 0 chr4 97926848 97927156 -104401191 - AluSg SINE Alu -2 308 1 914 193 11 0 chr4 97928786 97928962 -104399385 + MER105 DNA DNA 27 204 0 2288 99 3 10 chr4 97930308 97930620 -104397727 - AluSg SINE Alu 0 310 1 1138 242 115 67 chr4 97930830 97930955 -104397392 + L1MC5 LINE L1 7068 7185 -776 1475 206 73 25 chr4 97930955 97931323 -104397024 - MLT1B LTR MaLR 0 390 5 1138 242 115 67 chr4 97931323 97931737 -104396610 + L1MC5 LINE L1 7185 7661 -300 2529 94 3 11 chr4 97931737 97932099 -104396248 + L1PA10 LINE L1 5801 6159 -9 1138 242 115 67 chr4 97932099 97932364 -104395983 + L1MC5 LINE L1 7661 7912 -49 211 278 111 14 chr4 97934771 97934843 -104393504 - L2 LINE L2 -56 3216 3138 936 242 67 45 chr4 97935150 97935574 -104392773 + MLT1C LTR MaLR 24 460 -7 481 288 142 44 chr4 97935868 97936094 -104392253 - MLT1G1 LTR MaLR 0 595 348 1775 175 46 8 chr4 97936166 97936532 -104391815 - L1MB3 LINE L1 -4 6179 5800 8872 187 57 13 chr4 97936532 97938721 -104389626 - L1M4c LINE L1 -4017 2367 15 384 324 62 7 chr4 97938907 97939052 -104389295 - MLT1G1 LTR MaLR -288 261 109 1249 231 81 36 chr4 97939053 97939386 -104388961 - MLT1A1 LTR MaLR 0 365 18 482 286 23 8 chr4 97940594 97940727 -104387620 - L2 LINE L2 0 3313 3179 616 279 26 60 chr4 97941303 97941536 -104386811 + MIR SINE MIR 27 251 -11 2712 211 48 16 chr4 97941560 97942225 -104386122 - MER76 LTR ERV 0 688 3 2267 114 0 0 chr4 97942657 97942964 -104385383 + AluSx SINE Alu 1 307 -5 22 56 0 0 chr4 97943144 97943180 -104385167 + AT_rich Low_complexity Low_complexity 1 36 0 639 251 11 38 chr4 97943399 97943582 -104384765 - MER5B DNA MER1_type 0 178 1 394 348 68 49 chr4 97943594 97943962 -104384385 - L2 LINE L2 -385 2929 2555 23 33 0 0 chr4 97944409 97944439 -104383908 + AT_rich Low_complexity Low_complexity 1 30 0 200 345 11 81 chr4 97944641 97944728 -104383619 - L2 LINE L2 -20 3252 3172 2298 97 13 0 chr4 97944890 97945198 -104383149 - AluSx SINE Alu 0 312 1 768 225 0 78 chr4 97945215 97945406 -104382941 - MER5B DNA MER1_type 0 178 3 687 292 106 0 chr4 97945498 97945734 -104382613 - MIR SINE MIR 0 262 2 420 200 0 0 chr4 97945877 97945982 -104382365 + (TA)n Simple_repeat Simple_repeat 1 105 0 490 158 0 0 chr4 97947716 97947792 -104380555 + AluJ/FLAM SINE Alu 3 78 -234 404 329 171 0 chr4 97947957 97948127 -104380220 + MIR SINE MIR 54 252 -10 224 366 62 27 chr4 97951297 97951409 -104376938 - L2 LINE L2 -9 3304 3189 521 129 0 0 chr4 97951434 97951504 -104376843 - Tigger7 DNA MER2_type 0 2487 2418 1136 213 9 9 chr4 97951536 97951766 -104376581 - Tigger7 DNA MER2_type -475 230 1 1070 193 25 5 chr4 97952776 97952978 -104375369 + MER2 DNA MER2_type 3 208 -137 283 193 11 136 chr4 97953005 97953093 -104375254 + MER2 DNA MER2_type 269 345 0 467 258 78 8 chr4 97953095 97953223 -104375124 - MIR SINE MIR -25 237 101 195 184 0 0 chr4 97953224 97953262 -104375085 + (TA)n Simple_repeat Simple_repeat 2 39 0 324 262 0 0 chr4 97953288 97953349 -104374998 + MIR SINE MIR 32 92 -170 5273 209 6 5 chr4 97953452 97954573 -104373774 + L1 LINE L1 3861 4983 -1163 412 262 37 0 chr4 97954724 97954831 -104373516 - MER81 DNA DNA -3 111 1 682 309 16 0 chr4 97955171 97955417 -104372930 - L1ME3A LINE L1 -272 5898 5649 516 206 0 0 chr4 97955424 97955521 -104372826 + MER5A DNA MER1_type 14 110 -79 1449 88 0 10 chr4 97956035 97956239 -104372108 + L1PA5 LINE L1 5949 6150 -4 180 0 0 0 chr4 97957013 97957033 -104371314 + (A)n Simple_repeat Simple_repeat 1 20 0 434 175 0 0 chr4 97957408 97957488 -104370859 - MADE1 DNA Mariner 0 80 1 300 250 125 22 chr4 97958092 97958228 -104370119 + L1ME LINE L1 5587 5736 -434 5361 98 3 5 chr4 97958328 97959087 -104369260 + MER11C LTR ERVK 315 1071 0 21 0 0 0 chr4 97959163 97959184 -104369163 + AT_rich Low_complexity Low_complexity 1 21 0 911 343 25 23 chr4 97959690 97960361 -104367986 + L1MCa LINE L1 1681 2462 -4145 444 212 10 0 chr4 97960357 97960456 -104367891 + L1MCa LINE L1 2698 2797 -3629 * 1032 177 13 35 chr4 97960618 97960850 -104367497 + AluY SINE Alu 83 309 -2 290 260 10 73 chr4 97961276 97961372 -104366975 - MIR SINE MIR -172 90 1 632 333 87 31 chr4 97962374 97962855 -104365492 - LTR33 LTR ERVL -12 509 2 527 324 67 18 chr4 97962855 97963080 -104365267 - MIR SINE MIR -20 242 7 1790 144 60 0 chr4 97963773 97964057 -104364290 - AluJo SINE Alu -7 305 5 24 67 0 0 chr4 97964177 97964222 -104364125 + AT_rich Low_complexity Low_complexity 1 45 0 454 261 45 23 chr4 97964261 97964437 -104363910 + MER104 DNA MER2_type 1 180 0 22 35 0 0 chr4 97965031 97965060 -104363287 + AT_rich Low_complexity Low_complexity 1 29 0 268 319 20 56 chr4 97965149 97965371 -104362976 + MIR SINE MIR 21 232 -30 397 224 13 0 chr4 97966268 97966344 -104362003 + L1M4b LINE L1 5 81 -6778 3982 175 39 54 chr4 97966394 97967365 -104360982 + L1MB8 LINE L1 5220 6178 0 647 231 60 50 chr4 97967381 97967580 -104360767 + MIR SINE MIR 39 239 -23 203 364 65 19 chr4 97967617 97967771 -104360576 - L2 LINE L2 -179 3093 2933 371 328 73 37 chr4 97969068 97969532 -104358815 + L1M4b LINE L1 782 1262 -5876 1239 74 0 0 chr4 97970644 97970820 -104357527 + (TCC)n Simple_repeat Simple_repeat 3 178 0 372 181 23 44 chr4 97972051 97972168 -104356179 - MER34 LTR ERV1 -5 775 449 290 307 45 23 chr4 97972669 97972757 -104355590 + MIR SINE MIR 2 91 -171 225 336 139 0 chr4 97973026 97973148 -104355199 + MIR SINE MIR 100 238 -24 2078 110 4 0 chr4 97973519 97973824 -104354523 - AluSp SINE Alu 0 306 1 255 318 111 8 chr4 97974137 97974263 -104354084 + MIR SINE MIR 124 262 0 2095 103 3 27 chr4 97974373 97974673 -104353674 - AluSg SINE Alu -17 293 1 213 94 0 0 chr4 97974883 97974915 -104353432 + (A)n Simple_repeat Simple_repeat 1 32 0 1135 217 94 22 chr4 97975075 97975351 -104352996 + AluJb SINE Alu 1 296 -6 236 319 88 0 chr4 97975351 97975511 -104352836 - L1ME LINE L1 -355 5766 5593 6504 85 3 8 chr4 97975522 97976418 -104351929 - L1PA8 LINE L1 0 6172 5281 370 351 23 12 chr4 97976402 97976573 -104351774 - L1ME LINE L1 -536 5585 5413 * 1268 270 99 48 chr4 97977028 97977627 -104350720 + L2 LINE L2 2467 3167 -146 189 0 0 0 chr4 97977627 97977648 -104350699 + (TA)n Simple_repeat Simple_repeat 1 21 0 1268 270 99 48 chr4 97977648 97977761 -104350586 + L2 LINE L2 3167 3273 -40 27 0 0 0 chr4 97978678 97978705 -104349642 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr4 97978743 97978771 -104349576 + AT_rich Low_complexity Low_complexity 1 28 0 232 319 108 13 chr4 97980359 97980516 -104347831 - L1ME3A LINE L1 -12 6158 5987 923 233 69 35 chr4 97980610 97980958 -104347389 - L1ME3A LINE L1 -224 5946 5587 666 299 74 75 chr4 97981177 97981562 -104346785 - L1MEd LINE L1 -5010 1109 724 497 138 0 0 chr4 97981562 97981642 -104346705 + MADE1 DNA Mariner 1 80 0 666 299 74 75 chr4 97981642 97981812 -104346535 - L1MEd LINE L1 -5395 724 555 210 71 0 0 chr4 97982010 97982038 -104346309 + (T)n Simple_repeat Simple_repeat 1 28 0 2031 82 8 0 chr4 97983646 97983967 -104344380 - AluY SINE Alu 0 350 28 359 221 122 64 chr4 97984151 97984323 -104344024 - MLT1J LTR MaLR -319 192 11 1804 53 4 4 chr4 97986278 97986506 -104341841 - AluY SINE Alu -1 310 83 543 168 10 0 chr4 97986666 97986767 -104341580 - L1ME LINE L1 -3627 2453 2352 * 1682 294 71 32 chr4 97986763 97988244 -104340103 - L1ME LINE L1 -4145 2116 529 834 306 68 36 chr4 97988516 97988957 -104339390 - L1ME LINE L1 -5610 460 6 363 359 13 0 chr4 97989872 97990028 -104338319 - L2 LINE L2 -1207 2107 1950 1129 253 157 25 chr4 97991131 97991744 -104336603 + Charlie2 DNA MER1_type 2029 2722 -140 260 319 0 35 chr4 97991753 97991869 -104336478 - LTR33A LTR ERVL 0 523 412 356 246 34 134 chr4 97992086 97992265 -104336082 - LTR33A LTR ERVL -362 161 1 253 276 78 0 chr4 97992283 97992399 -104335948 + Charlie2 DNA MER1_type 2729 2853 -9 2090 135 0 0 chr4 97993110 97993422 -104334925 - AluSx SINE Alu 0 312 1 539 365 116 39 chr4 97993529 97995308 -104333039 - L2 LINE L2 -15 3257 1064 1441 117 142 86 chr4 97995534 97995721 -104332626 + L1MC2 LINE L1 5989 6203 -141 1558 170 7 31 chr4 97995721 97996010 -104332337 + AluJo SINE Alu 1 282 -30 1441 117 142 86 chr4 97996010 97996146 -104332201 + L1MC2 LINE L1 6203 6330 -14 215 342 27 9 chr4 97996168 97996279 -104332068 - L2 LINE L2 -2597 717 605 195 333 13 13 chr4 97996962 97997040 -104331307 + MIR SINE MIR 71 148 -114 186 206 191 0 chr4 97997166 97997229 -104331118 - L2 LINE L2 -766 2548 2474 319 67 67 0 chr4 97997234 97997279 -104331068 - L1PA6 LINE L1 -277 5877 5830 1028 29 0 36 chr4 97997279 97997409 -104330938 + L1PA5 LINE L1 6023 6154 0 201 39 0 0 chr4 97997485 97997511 -104330836 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 741 295 159 22 chr4 97997523 97998166 -104330181 + L2 LINE L2 2550 3281 -32 706 298 47 9 chr4 97998528 97998743 -104329604 - MIR SINE MIR -36 226 4 418 261 23 31 chr4 97998743 97998866 -104329481 - L2 LINE L2 -988 2326 2205 964 309 78 37 chr4 97999066 97999526 -104328821 - MLT1K LTR MaLR -106 482 4 667 291 96 13 chr4 98000087 98000317 -104328030 - MIR SINE MIR -7 255 7 207 189 0 0 chr4 98000903 98000940 -104327407 + GA-rich Low_complexity Low_complexity 2 38 0 496 286 47 104 chr4 98001028 98001325 -104327022 - L2 LINE L2 0 3272 2993 4846 41 0 0 chr4 98001626 98002212 -104326135 - L1PA4 LINE L1 -3 6152 5567 187 358 119 9 chr4 98005428 98005537 -104322810 - L2 LINE L2 -7 3265 3145 233 67 0 44 chr4 98005538 98005583 -104322764 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 1568 270 80 44 chr4 98005601 98006287 -104322060 + L2 LINE L2 2147 2857 -457 195 312 11 65 chr4 98006476 98006569 -104321778 + MIR SINE MIR 61 148 -114 214 216 122 40 chr4 98007586 98007660 -104320687 - L2 LINE L2 -5 3308 3229 1185 288 82 36 chr4 98007849 98008315 -104320032 + MLT1J LTR MaLR 1 487 -24 588 294 65 52 chr4 98009081 98009390 -104318957 - MLT1H LTR MaLR -225 324 12 36 40 0 0 chr4 98009798 98009848 -104318499 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr4 98011207 98011228 -104317119 + AT_rich Low_complexity Low_complexity 1 21 0 355 275 91 48 chr4 98011408 98011717 -104316630 + L1M4 LINE L1 2675 2996 -3150 195 42 0 0 chr4 98011726 98011750 -104316597 + (TTCCC)n Simple_repeat Simple_repeat 5 28 0 284 276 20 31 chr4 98011850 98011948 -104316399 + CT-rich Low_complexity Low_complexity 1 97 0 593 356 106 23 chr4 98012407 98013011 -104315336 + L3 LINE CR1 376 1029 -548 240 316 41 66 chr4 98013035 98013231 -104315116 + L3 LINE CR1 1214 1404 -173 225 250 96 0 chr4 98013282 98013334 -104315013 + MIR SINE MIR 194 250 -12 30 27 0 0 chr4 98013584 98013621 -104314726 + AT_rich Low_complexity Low_complexity 1 37 0 23 86 0 0 chr4 98013645 98013703 -104314644 + AT_rich Low_complexity Low_complexity 1 58 0 460 354 150 33 chr4 98013973 98015179 -104313168 - L2 LINE L2 0 3313 1910 2187 30 4 0 chr4 98015772 98016039 -104312308 - L1PA4 LINE L1 -2 6153 5886 404 36 0 18 chr4 98016187 98016242 -104312105 + (GA)n Simple_repeat Simple_repeat 2 55 0 26 93 0 0 chr4 98016532 98016607 -104311740 + AT_rich Low_complexity Low_complexity 1 75 0 503 333 46 9 chr4 98017199 98017418 -104310929 + MIR SINE MIR 2 228 -34 250 300 64 124 chr4 98019890 98020140 -104308207 - L2 LINE L2 -4 3268 3034 752 330 69 56 chr4 98020313 98021062 -104307285 - L2 LINE L2 -520 2794 2036 567 215 193 47 chr4 98021177 98021410 -104306937 - MLT1G3 LTR MaLR -106 424 158 208 179 105 74 chr4 98021490 98021585 -104306762 + MIR SINE MIR 155 252 -10 2119 103 30 0 chr4 98021788 98022089 -104306258 + AluSq SINE Alu 1 310 -3 984 339 68 64 chr4 98022478 98023592 -104304755 + L2 LINE L2 2159 3268 -4 213 229 21 0 chr4 98024966 98025014 -104303333 - L2 LINE L2 -1 3312 3264 258 322 58 0 chr4 98025056 98025143 -104303204 - L2 LINE L2 -9 3263 3172 2459 64 0 0 chr4 98026589 98026887 -104301460 + AluY SINE Alu 1 298 -13 198 333 30 0 chr4 98027911 98027977 -104300370 - L2 LINE L2 -69 3203 3136 563 273 86 16 chr4 98028314 98028501 -104299846 + MIR SINE MIR 41 240 -22 2419 166 40 17 chr4 98029170 98029645 -104298702 - MER66B LTR ERV1 0 486 1 21 82 0 0 chr4 98030111 98030160 -104298187 + AT_rich Low_complexity Low_complexity 1 49 0 688 308 83 22 chr4 98031109 98031250 -104297097 - L2 LINE L2 -6 3307 3176 198 0 0 0 chr4 98031250 98031272 -104297075 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 688 308 83 22 chr4 98031272 98031638 -104296709 - L2 LINE L2 -137 3176 2717 37 39 0 0 chr4 98032308 98032359 -104295988 + AT_rich Low_complexity Low_complexity 1 51 0 29 47 0 0 chr4 98033970 98034013 -104294334 + AT_rich Low_complexity Low_complexity 1 43 0 2281 86 3 3 chr4 98034580 98034881 -104293466 - AluSp SINE Alu -12 301 1 2212 93 7 0 chr4 98034924 98035214 -104293133 + AluSp SINE Alu 1 292 -21 231 292 148 42 chr4 98035993 98036209 -104292138 - L1ME LINE L1 -295 5826 5588 22 56 0 0 chr4 98036960 98036996 -104291351 + AT_rich Low_complexity Low_complexity 1 36 0 309 244 23 35 chr4 98037711 98037797 -104290550 + MIR SINE MIR 165 249 -13 1289 248 29 66 chr4 98039846 98040257 -104288090 - MSTD LTR MaLR 0 396 1 42 104 0 0 chr4 98041425 98041579 -104286768 + AT_rich Low_complexity Low_complexity 1 154 0 292 191 29 0 chr4 98041850 98041897 -104286450 - MLT2B3 LTR ERVL 0 554 506 1261 156 5 9 chr4 98041897 98042115 -104286232 - Tigger1 DNA MER2_type -1 2417 2201 632 179 58 58 chr4 98042103 98042259 -104286088 - Tigger1 DNA MER2_type -2261 157 2 * 2236 188 76 42 chr4 98042280 98042782 -104285565 - MLT2B3 LTR ERVL -41 508 5 245 303 62 17 chr4 98042909 98043087 -104285260 + L1ME LINE L1 5635 5820 -301 347 264 130 67 chr4 98043627 98043926 -104284421 - ERVL LTR ERVL -4323 1441 1124 413 308 88 0 chr4 98044675 98044857 -104283490 - L2 LINE L2 -2303 1011 814 3935 68 8 0 chr4 98045061 98045603 -104282744 + L1PA8 LINE L1 5634 6179 0 24 32 0 0 chr4 98046262 98046293 -104282054 + AT_rich Low_complexity Low_complexity 1 31 0 477 265 105 35 chr4 98047121 98047378 -104280969 - L1ME3A LINE L1 -2 6102 5828 2371 159 3 0 chr4 98047468 98047845 -104280502 - MER57A LTR ERV1 0 403 26 3611 269 102 35 chr4 98047845 98050561 -104277786 - L1ME3A LINE L1 -403 5701 2813 239 198 22 154 chr4 98050825 98050916 -104277431 - L1ME3A LINE L1 -5989 81 3 21 0 0 0 chr4 98051249 98051270 -104277077 + AT_rich Low_complexity Low_complexity 1 21 0 1750 196 42 24 chr4 98051644 98052027 -104276320 - MLT1B LTR MaLR 0 390 1 1510 311 110 35 chr4 98052158 98053183 -104275164 - L2 LINE L2 -211 3102 2014 613 304 89 8 chr4 98055219 98055456 -104272891 - MIR SINE MIR 0 262 7 516 135 0 0 chr4 98055746 98055835 -104272512 - L1MA9 LINE L1 -22 6290 6202 1556 135 29 0 chr4 98055844 98056088 -104272259 - L1MA9 LINE L1 -231 6081 5831 632 304 70 9 chr4 98056312 98056542 -104271805 - MIR SINE MIR 0 262 19 4056 214 53 70 chr4 98059267 98061108 -104267239 - L1MD2 LINE L1 -11 6231 4459 1326 207 16 70 chr4 98061108 98061494 -104266853 - MLT1A1 LTR MaLR 0 365 1 4056 214 53 70 chr4 98061494 98062093 -104266254 - L1MD2 LINE L1 -1783 4459 3851 205 341 36 72 chr4 98062648 98062786 -104265561 + L2 LINE L2 3133 3265 -7 * 630 271 0 0 chr4 98062767 98062907 -104265440 - MIR SINE MIR -6 256 117 271 305 85 14 chr4 98063154 98063295 -104265052 + MIR SINE MIR 28 178 -84 194 285 102 51 chr4 98065159 98065296 -104263051 + MIR3 SINE MIR 2 145 -63 299 25 25 0 chr4 98065732 98065772 -104262575 + (CA)n Simple_repeat Simple_repeat 1 41 0 223 308 131 31 chr4 98066249 98066340 -104262007 + MIR3 SINE MIR 3 112 -96 2772 36 0 0 chr4 98066340 98066673 -104261674 - L1PA4 LINE L1 0 6155 5823 223 308 131 31 chr4 98066673 98066711 -104261636 + MIR3 SINE MIR 112 145 -63 26 0 0 0 chr4 98066841 98066867 -104261480 + AT_rich Low_complexity Low_complexity 1 26 0 330 376 26 29 chr4 98067289 98067629 -104260718 + L3 LINE CR1 526 864 -713 278 348 18 37 chr4 98067850 98068014 -104260333 + L3b LINE CR1 1162 1322 -261 40 79 0 29 chr4 98068595 98068735 -104259612 + AT_rich Low_complexity Low_complexity 1 136 0 1702 45 5 9 chr4 98070966 98071188 -104257159 + L1PA4 LINE L1 5935 6155 0 2021 108 13 7 chr4 98071204 98071510 -104256837 - AluSc SINE Alu -1 308 1 22 70 0 0 chr4 98073523 98073566 -104254781 + AT_rich Low_complexity Low_complexity 1 43 0 275 296 83 0 chr4 98073611 98073719 -104254628 - L3 LINE CR1 -1 1576 1460 21 0 0 0 chr4 98073921 98073942 -104254405 + AT_rich Low_complexity Low_complexity 1 21 0 2139 132 0 0 chr4 98073948 98074252 -104254095 - AluSx SINE Alu -8 304 1 2130 125 10 16 chr4 98074789 98075102 -104253245 - AluSq SINE Alu -2 311 1 226 256 244 0 chr4 98077070 98077148 -104251199 - MER5A DNA MER1_type -83 106 10 29 28 0 0 chr4 98077310 98077346 -104251001 + AT_rich Low_complexity Low_complexity 1 36 0 959 98 148 44 chr4 98077411 98077516 -104250831 + MER30 DNA MER1_type 1 94 -136 324 0 0 0 chr4 98077516 98077552 -104250795 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 959 98 148 44 chr4 98077552 98077629 -104250718 + MER30 DNA MER1_type 94 202 -28 575 115 83 19 chr4 98077712 98077868 -104250479 - L1MA5 LINE L1 -2 6298 6133 765 238 72 0 chr4 98078408 98078589 -104249758 + MER20 DNA MER1_type 7 200 -19 592 255 46 7 chr4 98078599 98078752 -104249595 + MER5A DNA MER1_type 1 159 -30 611 163 0 27 chr4 98079055 98079202 -104249145 + (TA)n Simple_repeat Simple_repeat 2 144 0 1344 251 62 59 chr4 98079552 98080067 -104248280 - L2 LINE L2 0 3313 2800 479 255 161 13 chr4 98080074 98080223 -104248124 + MER5A DNA MER1_type 11 181 -8 527 279 82 0 chr4 98080236 98080419 -104247928 - L2 LINE L2 -510 2804 2607 1105 274 97 47 chr4 98081253 98081767 -104246580 - L2 LINE L2 -4 3309 2780 322 326 74 30 chr4 98081747 98081882 -104246465 - MER5B DNA MER1_type -37 141 1 * 4467 282 102 89 chr4 98081882 98084382 -104243965 - L2 LINE L2 -504 2810 269 416 292 31 0 chr4 98084382 98084512 -104243835 - MER94 DNA DNA 0 134 1 4467 282 102 89 chr4 98084512 98084753 -104243594 - L2 LINE L2 -3045 269 33 21 0 0 0 chr4 98085596 98085617 -104242730 + AT_rich Low_complexity Low_complexity 1 21 0 615 92 0 0 chr4 98085860 98085947 -104242400 + (TA)n Simple_repeat Simple_repeat 2 88 0 206 195 0 0 chr4 98086157 98086198 -104242149 - L2 LINE L2 0 3272 3232 180 359 65 69 chr4 98086241 98086503 -104241844 - L2 LINE L2 -176 3096 2836 22 0 0 0 chr4 98087086 98087108 -104241239 + AT_rich Low_complexity Low_complexity 1 22 0 1704 175 52 27 chr4 98087148 98087514 -104240833 + THE1C LTR MaLR 1 375 0 2454 87 3 0 chr4 98087619 98087930 -104240417 + AluSp SINE Alu 1 312 -1 21 0 0 0 chr4 98088458 98088479 -104239868 + AT_rich Low_complexity Low_complexity 1 21 0 37 23 0 0 chr4 98088752 98088796 -104239551 + AT_rich Low_complexity Low_complexity 1 44 0 2019 157 29 8 chr4 98088796 98089172 -104239175 - L1MB3 LINE L1 -15 6168 5785 237 211 0 0 chr4 98089172 98089224 -104239123 + (TATATG)n Simple_repeat Simple_repeat 4 55 0 239 152 106 15 chr4 98089245 98089311 -104239036 - L1MC4 LINE L1 -1339 6703 6632 * 1401 190 145 31 chr4 98089279 98089624 -104238723 - L1MB3 LINE L1 -393 5790 5412 584 319 11 21 chr4 98089957 98090148 -104238199 - MIR3 SINE MIR 0 208 20 432 321 27 27 chr4 98090216 98090403 -104237944 - MER5A DNA MER1_type -1 188 2 647 289 11 0 chr4 98090438 98090625 -104237722 + MER5A DNA MER1_type 1 189 0 332 399 63 23 chr4 98090931 98091330 -104237017 + L2 LINE L2 2283 2697 -617 977 202 38 32 chr4 98092280 98092584 -104235763 + MER96B DNA MER1_type? 10 406 -11 182 61 0 30 chr4 98092929 98092962 -104235385 + (TTTTTA)n Simple_repeat Simple_repeat 2 33 0 1147 288 178 22 chr4 98094143 98094324 -104234023 + L2 LINE L2 2292 2443 -870 947 133 0 12 chr4 98094324 98094490 -104233857 + (TTCC)n Simple_repeat Simple_repeat 3 166 0 1660 142 28 56 chr4 98094493 98094781 -104233566 - AluSx SINE Alu -32 280 1 1147 288 178 22 chr4 98094781 98095358 -104232989 + L2 LINE L2 2444 3166 -147 810 194 36 9 chr4 98095361 98095567 -104232780 - L1MA9 LINE L1 0 6291 6088 522 262 14 14 chr4 98095569 98095710 -104232637 + L2 LINE L2 3173 3313 0 5297 154 24 10 chr4 98095829 98096308 -104232039 - L1ME1 LINE L1 -33 6263 5792 462 36 0 0 chr4 98096308 98096364 -104231983 + (CA)n Simple_repeat Simple_repeat 2 57 0 5297 154 24 10 chr4 98096364 98097060 -104231287 - L1ME1 LINE L1 -504 5792 5084 2932 206 40 1 chr4 98097079 98097725 -104230622 + L1ME1 LINE L1 4420 5090 -1056 453 275 60 0 chr4 98097753 98097953 -104230394 - Charlie7 DNA MER1_type -316 2296 2085 22 35 0 0 chr4 98098881 98098910 -104229437 + AT_rich Low_complexity Low_complexity 1 29 0 2231 187 126 62 chr4 98099186 98099555 -104228792 + L1MD3 LINE L1 6715 7059 -936 291 185 65 76 chr4 98099555 98099647 -104228700 + MLT1F1 LTR MaLR 35 125 -442 2231 187 126 62 chr4 98099647 98100190 -104228157 + L1MD3 LINE L1 7059 7994 -1 711 243 120 28 chr4 98100204 98100562 -104227785 - HAL1 LINE L1 -198 2309 1919 1440 262 112 43 chr4 98100595 98101560 -104226787 - HAL1 LINE L1 -687 1820 790 211 354 7 56 chr4 98101583 98101727 -104226620 - L2 LINE L2 -337 2977 2841 240 208 0 21 chr4 98101970 98102018 -104226329 - MIR3 SINE MIR -46 162 116 284 235 63 140 chr4 98103149 98103370 -104224977 + L2 LINE L2 3105 3308 -5 21 0 0 0 chr4 98104435 98104456 -104223891 + AT_rich Low_complexity Low_complexity 1 21 0 399 68 0 0 chr4 98104782 98104841 -104223506 + (GA)n Simple_repeat Simple_repeat 2 60 0 243 341 98 0 chr4 98105177 98105300 -104223047 + MIR SINE MIR 20 154 -108 276 326 15 44 chr4 98105559 98105591 -104222756 - MIR SINE MIR -111 151 120 2341 113 0 0 chr4 98105591 98105902 -104222445 + AluSp SINE Alu 3 313 0 276 326 15 44 chr4 98105902 98106004 -104222343 - MIR SINE MIR -142 120 21 887 298 94 31 chr4 98106151 98106628 -104221719 - L2 LINE L2 0 3313 2807 598 250 0 0 chr4 98106673 98106785 -104221562 - MER63A DNA MER1_type -1 209 98 388 243 28 0 chr4 98106785 98106892 -104221455 + L1ME3 LINE L1 6052 6161 -1 238 261 101 14 chr4 98106915 98107053 -104221294 + L1MEd LINE L1 687 836 -5283 849 314 141 2 chr4 98107159 98107579 -104220768 - L2 LINE L2 -769 2545 2068 283 298 136 37 chr4 98108667 98108858 -104219489 - MIR SINE MIR -29 233 24 2175 116 0 7 chr4 98108989 98109299 -104219048 + AluSx SINE Alu 1 308 -4 234 316 53 60 chr4 98109447 98109580 -104218767 + MIR3 SINE MIR 14 145 -63 249 365 107 28 chr4 98110943 98111121 -104217226 + MIR SINE MIR 1 192 -70 631 162 22 66 chr4 98111201 98111337 -104217010 - FLAM_A SINE Alu -3 130 1 495 332 169 14 chr4 98111525 98111874 -104216473 - L3 LINE CR1 -134 1443 1041 565 299 126 4 chr4 98112019 98112250 -104216097 + MIR SINE MIR 2 260 -2 605 290 71 52 chr4 98112283 98112686 -104215661 - L2 LINE L2 -122 3191 2782 321 300 50 17 chr4 98112770 98112797 -104215550 - L3 LINE CR1 -547 1030 1005 574 100 0 0 chr4 98112797 98112877 -104215470 - MADE1 DNA Mariner 0 80 1 321 300 50 17 chr4 98112877 98112969 -104215378 - L3 LINE CR1 -572 1005 907 6414 30 1 3 chr4 98112972 98113737 -104214610 - L1PA4 LINE L1 0 6155 5392 5507 73 6 0 chr4 98113737 98114461 -104213886 - L1PA6 LINE L1 -9 6145 5418 453 312 197 27 chr4 98114565 98115007 -104213340 - L3 LINE CR1 -850 727 211 673 167 20 27 chr4 98115537 98115687 -104212660 - L1MA3 LINE L1 0 6305 6157 670 221 43 7 chr4 98115713 98115853 -104212494 - FRAM SINE Alu -30 146 2 248 186 0 0 chr4 98115857 98115900 -104212447 - MSTB LTR MaLR -4 424 382 21014 115 10 25 chr4 98115901 98120212 -104208135 + L1PA7 LINE L1 1 4336 -2125 6813 68 10 0 chr4 98120212 98121335 -104207012 + L1PA7 LINE L1 5337 6469 0 1931 157 74 11 chr4 98121351 98121702 -104206645 - MSTB LTR MaLR -27 399 27 775 206 6 31 chr4 98121702 98121862 -104206485 - AluJo SINE Alu -144 168 13 57 28 0 0 chr4 98121995 98122066 -104206281 + AT_rich Low_complexity Low_complexity 1 71 0 508 235 10 98 chr4 98122162 98122366 -104205981 + L1MC5 LINE L1 7744 7929 -32 6101 175 20 14 chr4 98122459 98124053 -104204294 - L1MC1 LINE L1 -1 6332 4728 334 169 0 0 chr4 98124067 98124126 -104204221 - L1MC1 LINE L1 -1392 4754 4696 207 0 0 0 chr4 98125392 98125415 -104202932 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 242 204 38 76 chr4 98126174 98126306 -104202041 - HAL1b LINE L1 -305 1043 917 * 972 182 87 16 chr4 98126299 98126541 -104201806 + L1MD2 LINE L1 6101 6359 0 397 347 80 0 chr4 98127032 98127208 -104201139 - MLT1J2 LTR MaLR -44 406 217 1179 246 74 32 chr4 98127214 98127578 -104200769 + L1ME1 LINE L1 5732 6111 -73 1836 152 6 25 chr4 98127578 98127893 -104200454 + AluSx SINE Alu 1 309 -3 1179 246 74 32 chr4 98127893 98127970 -104200377 + L1ME1 LINE L1 6111 6183 -1 442 242 84 84 chr4 98128075 98128253 -104200094 + MER5A DNA MER1_type 12 189 0 23 54 0 0 chr4 98128547 98128584 -104199763 + AT_rich Low_complexity Low_complexity 1 37 0 411 299 51 62 chr4 98129098 98129293 -104199054 + MIR SINE MIR 8 198 -50 453 289 88 29 chr4 98129423 98129627 -104198720 + MER20 DNA MER1_type 4 219 0 598 291 69 79 chr4 98129953 98130448 -104197899 + LTR16A1 LTR ERVL 2 457 0 595 284 147 54 chr4 98130448 98131214 -104197133 + L2 LINE L2 2461 3312 -1 237 270 104 52 chr4 98131226 98131341 -104197006 - MIR SINE MIR -63 145 25 452 123 9 104 chr4 98131687 98131793 -104196554 + L1MA5A LINE L1 6197 6292 -5 214 143 0 48 chr4 98132055 98132097 -104196250 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 248 330 93 0 chr4 98132123 98132220 -104196127 - L2 LINE L2 -175 3097 2992 23 0 0 0 chr4 98133538 98133561 -104194786 + AT_rich Low_complexity Low_complexity 1 23 0 374 262 19 10 chr4 98134063 98134166 -104194181 + L2 LINE L2 3178 3281 -32 260 284 28 49 chr4 98135360 98135484 -104192863 + MIR3 SINE MIR 38 160 -48 2184 116 53 28 chr4 98135486 98135841 -104192506 - THE1B LTR MaLR 0 364 1 354 273 127 30 chr4 98135899 98136185 -104192162 - MLT1H1 LTR MaLR 0 595 185 273 264 9 38 chr4 98136217 98136323 -104192024 - MLT1H1 LTR MaLR -471 122 20 719 243 58 16 chr4 98136592 98136781 -104191566 + MIR SINE MIR 59 255 -7 24 32 0 0 chr4 98136930 98136961 -104191386 + AT_rich Low_complexity Low_complexity 1 31 0 267 316 74 21 chr4 98138690 98138785 -104189562 - L2 LINE L2 -19 3253 3154 554 146 6 128 chr4 98139454 98139618 -104188729 - MER69 DNA AcHobo -6 2520 2377 3807 125 7 27 chr4 98139760 98140238 -104188109 + THE1-int LTR MaLR 775 1240 -340 1919 168 3 0 chr4 98140238 98140535 -104187812 - AluSx SINE Alu -12 300 3 3807 125 7 27 chr4 98140535 98140654 -104187693 + THE1-int LTR MaLR 1240 1360 -220 411 54 0 18 chr4 98141202 98141258 -104187089 + HERVH48 LTR ERV1 6600 6654 0 2402 126 31 10 chr4 98141258 98141648 -104186699 + MER48 LTR ERV1 1 398 0 1664 164 4 0 chr4 98141648 98141911 -104186436 + HERVH48 LTR ERV1 1 264 -6390 * 3537 125 63 11 chr4 98141894 98142508 -104185839 + HERVH48 LTR ERV1 445 1090 -5564 2234 57 0 0 chr4 98142608 98142873 -104185474 - AluY SINE Alu -46 265 1 1132 191 45 23 chr4 98142881 98143190 -104185157 - MER69 DNA AcHobo -213 2313 1998 * 1394 251 15 56 chr4 98143167 98143634 -104184713 - MER69 DNA AcHobo -1949 577 130 1968 74 4 15 chr4 98144932 98145203 -104183144 - L1PA7 LINE L1 -9 6145 5878 21 0 0 0 chr4 98145442 98145463 -104182884 + AT_rich Low_complexity Low_complexity 1 21 0 367 356 96 0 chr4 98145536 98145713 -104182634 - MIR3 SINE MIR -11 197 4 2166 213 51 16 chr4 98145985 98146473 -104181874 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chr4 98146689 98146710 -104181637 + AT_rich Low_complexity Low_complexity 1 21 0 1265 226 113 28 chr4 98146829 98147254 -104181093 - MLT1C LTR MaLR 0 467 7 479 297 71 39 chr4 98147475 98147718 -104180629 - MIR SINE MIR -15 247 3 8047 124 38 3 chr4 98148583 98149835 -104178512 - HSMAR2 DNA Mariner -3 1299 5 372 355 33 51 chr4 98149907 98150183 -104178164 + L2 LINE L2 2124 2394 -920 527 333 32 51 chr4 98150491 98150707 -104177640 - MIR SINE MIR -22 240 29 1435 210 75 10 chr4 98151187 98151572 -104176775 - Charlie4a DNA MER1_type -81 427 18 267 264 8 70 chr4 98152795 98152924 -104175423 + Charlie8 DNA MER1_type 138 258 -2159 22 0 0 0 chr4 98153012 98153034 -104175313 + AT_rich Low_complexity Low_complexity 1 22 0 42439 38 22 1 chr4 98153034 98159061 -104169286 - L1PA3 LINE L1 -3 6152 1 617 249 44 39 chr4 98159377 98159582 -104168765 + MIR SINE MIR 57 262 0 442 313 75 26 chr4 98159847 98160074 -104168273 - MIR SINE MIR -5 257 20 2370 84 3 0 chr4 98160278 98160587 -104167760 + AluY SINE Alu 1 310 -1 263 247 32 75 chr4 98162106 98162199 -104166148 - MIR SINE MIR -155 107 19 246 301 12 0 chr4 98162309 98162392 -104165955 + CT-rich Low_complexity Low_complexity 2 85 0 23 0 0 0 chr4 98162876 98162899 -104165448 + AT_rich Low_complexity Low_complexity 1 23 0 556 303 35 64 chr4 98163659 98164082 -104164265 + L1ME LINE L1 122 532 -5538 1464 234 67 20 chr4 98164175 98165136 -104163211 + L1MB5 LINE L1 5118 6145 -19 14088 138 40 17 chr4 98166335 98166913 -104161434 + Tigger1 DNA MER2_type 7 570 -1848 2212 100 0 0 chr4 98166913 98167224 -104161123 + AluSq SINE Alu 5 315 0 14088 138 40 17 chr4 98167224 98169001 -104159346 + Tigger1 DNA MER2_type 570 2417 -1 1042 186 5 14 chr4 98169145 98169355 -104158992 - MER3 DNA MER1_type -1 208 1 325 318 12 122 chr4 98169625 98169962 -104158385 - L2 LINE L2 -4 3268 2969 1996 154 0 0 chr4 98169966 98170271 -104158076 + AluSx SINE Alu 1 305 -7 668 299 116 39 chr4 98171272 98171817 -104156530 - L1ME3A LINE L1 -248 5922 5336 283 270 0 0 chr4 98172051 98172140 -104156207 + L1MC4 LINE L1 6614 6702 -1340 262 281 22 0 chr4 98172061 98172150 -104156197 - L1MC4 LINE L1 -1339 6703 6613 * 21 0 0 0 chr4 98172224 98172245 -104156102 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr4 98172268 98172291 -104156056 + (T)n Simple_repeat Simple_repeat 1 23 0 42952 35 22 1 chr4 98172293 98178320 -104150027 - L1HS LINE L1 -1 6154 1 34 93 0 0 chr4 98178470 98178567 -104149780 + AT_rich Low_complexity Low_complexity 1 97 0 1092 104 7 0 chr4 98179433 98179587 -104148760 - L1P2 LINE L1 -472 5682 5528 1601 185 4 11 chr4 98180243 98180524 -104147823 + AluSx SINE Alu 1 279 -33 80 0 0 0 chr4 98180535 98180615 -104147732 + AT_rich Low_complexity Low_complexity 1 80 0 1748 75 13 13 chr4 98180759 98180987 -104147360 + AluY SINE Alu 68 295 -16 226 273 65 0 chr4 98182012 98182089 -104146258 + MER81 DNA DNA 33 114 0 292 325 191 16 chr4 98183980 98184168 -104144179 + MIR SINE MIR 41 261 -1 446 316 42 30 chr4 98186378 98186546 -104141801 - MER5A DNA MER1_type -19 170 1 25 0 0 0 chr4 98186929 98186954 -104141393 + AT_rich Low_complexity Low_complexity 1 25 0 2213 55 74 16 chr4 98187136 98187448 -104140899 - L1PA7 LINE L1 0 6154 5825 1547 67 0 0 chr4 98187449 98187644 -104140703 + L1PA7 LINE L1 5623 5817 -337 331 314 93 52 chr4 98187749 98188156 -104140191 - L1M4 LINE L1 -1329 4817 4394 1328 176 79 39 chr4 98189555 98189680 -104138667 - MER2 DNA MER2_type 0 344 225 2429 46 0 0 chr4 98189680 98189989 -104138358 + AluY SINE Alu 1 309 0 1328 176 79 39 chr4 98189989 98190192 -104138155 - MER2 DNA MER2_type -119 225 2 457 328 30 38 chr4 98191657 98191919 -104136428 - MLT1I LTR MaLR -107 302 43 1691 140 0 0 chr4 98191938 98192173 -104136174 + AluSx SINE Alu 1 235 -77 28 61 0 0 chr4 98192386 98192435 -104135912 + AT_rich Low_complexity Low_complexity 1 49 0 2206 107 0 3 chr4 98192814 98193112 -104135235 - AluSq SINE Alu -15 298 2 25 83 0 0 chr4 98193786 98193846 -104134501 + AT_rich Low_complexity Low_complexity 1 60 0 739 275 16 5 chr4 98195011 98195200 -104133147 - MIR SINE MIR -70 192 2 8392 49 0 0 chr4 98195263 98197086 -104131261 - L1PA5 LINE L1 0 6154 4331 24 53 0 0 chr4 98197275 98197313 -104131034 + AT_rich Low_complexity Low_complexity 1 38 0 202 368 0 0 chr4 98197513 98197581 -104130766 + L2 LINE L2 3245 3312 -1 324 263 190 15 chr4 98198502 98198639 -104129708 - MIR SINE MIR -42 220 60 31 26 0 0 chr4 98199209 98199247 -104129100 + AT_rich Low_complexity Low_complexity 1 38 0 185 65 32 0 chr4 98199442 98199473 -104128874 + (TA)n Simple_repeat Simple_repeat 2 33 0 270 136 0 0 chr4 98200469 98200513 -104127834 + (CA)n Simple_repeat Simple_repeat 2 45 0 281 326 68 21 chr4 98200795 98200985 -104127362 - MIR3 SINE MIR -9 199 1 818 314 5 0 chr4 98201249 98201469 -104126878 - MIR SINE MIR 0 262 42 42985 30 21 1 chr4 98202356 98208387 -104119960 - L1HS LINE L1 0 6155 2 463 262 25 16 chr4 98209000 98209122 -104119225 + L2 LINE L2 3191 3313 0 216 351 74 49 chr4 98209245 98209570 -104118777 - L2 LINE L2 -835 2479 2147 1098 328 73 45 chr4 98210064 98211082 -104117265 - L2 LINE L2 0 3313 2260 364 278 89 47 chr4 98211319 98211488 -104116859 - MLT1L LTR MaLR -15 600 425 200 33 0 33 chr4 98211790 98211820 -104116527 + (CTATA)n Simple_repeat Simple_repeat 2 30 0 877 263 67 4 chr4 98211903 98212143 -104116204 - MIR SINE MIR -3 259 5 728 185 84 28 chr4 98212640 98212818 -104115529 - MER5A DNA MER1_type 0 189 2 22 56 0 0 chr4 98213436 98213472 -104114875 + AT_rich Low_complexity Low_complexity 1 36 0 363 299 30 85 chr4 98213663 98213864 -104114483 - MIR3 SINE MIR -1 207 18 404 326 80 6 chr4 98215822 98215997 -104112350 - L2 LINE L2 -1 3312 3125 2036 137 29 17 chr4 98216115 98216400 -104111947 + MLT1B LTR MaLR 36 327 -63 2018 160 33 3 chr4 98216400 98216737 -104111610 + MER7A DNA MER2_type 1 345 -1 2036 137 29 17 chr4 98216737 98216802 -104111545 + MLT1B LTR MaLR 327 390 0 243 0 0 0 chr4 98216834 98216861 -104111486 + (A)n Simple_repeat Simple_repeat 1 27 0 446 302 68 82 chr4 98216867 98217221 -104111126 - L2 LINE L2 -412 2902 2554 21 0 0 0 chr4 98219953 98219974 -104108373 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr4 98220080 98220115 -104108232 + AT_rich Low_complexity Low_complexity 1 35 0 25 65 0 0 chr4 98220153 98220199 -104108148 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr4 98220325 98220350 -104107997 + AT_rich Low_complexity Low_complexity 1 25 0 2609 55 0 0 chr4 98220598 98220906 -104107441 + AluY SINE Alu 1 308 -3 22 70 0 0 chr4 98222415 98222458 -104105889 + AT_rich Low_complexity Low_complexity 1 43 0 547 230 168 53 chr4 98222477 98222686 -104105661 - MIR SINE MIR -24 238 6 22 70 0 0 chr4 98224647 98224690 -104103657 + AT_rich Low_complexity Low_complexity 1 43 0 1463 201 133 36 chr4 98224690 98225163 -104103184 - LTR40a LTR ERVL 0 519 1 2950 220 23 8 chr4 98225172 98225814 -104102533 - MER82 DNA MER2_type -1 652 1 1056 249 45 68 chr4 98225838 98226494 -104101853 + L2 LINE L2 2639 3269 -44 246 81 0 0 chr4 98227555 98227592 -104100755 + (TG)n Simple_repeat Simple_repeat 2 38 0 1645 262 118 20 chr4 98228009 98228747 -104099600 - L2 LINE L2 -180 3133 2332 448 288 39 26 chr4 98228786 98228939 -104099408 + MIR SINE MIR 64 218 -44 205 359 142 0 chr4 98230064 98230170 -104098177 + L2 LINE L2 3143 3263 -9 237 261 212 73 chr4 98230282 98230447 -104097900 - L2 LINE L2 -1 3312 3125 187 281 35 0 chr4 98230562 98230619 -104097728 + L2 LINE L2 3251 3309 -4 276 331 47 91 chr4 98231060 98231314 -104097033 - L2 LINE L2 -2 3270 3028 24 0 0 0 chr4 98232196 98232220 -104096127 + AT_rich Low_complexity Low_complexity 1 24 0 257 342 58 71 chr4 98232523 98232678 -104095669 - L2 LINE L2 -4 3268 3116 479 217 64 70 chr4 98235500 98235684 -104092663 + MIR SINE MIR 21 207 -55 1929 149 3 22 chr4 98235737 98236053 -104092294 + AluSx SINE Alu 1 310 -2 966 337 41 17 chr4 98236072 98236484 -104091863 + MER115 DNA AcHobo 11 432 -261 382 265 88 0 chr4 98236505 98236607 -104091740 + Zaphod DNA AcHobo 3909 4019 -12 26 30 0 0 chr4 98237362 98237395 -104090952 + AT_rich Low_complexity Low_complexity 1 33 0 225 204 23 0 chr4 98237808 98237852 -104090495 - Charlie8 DNA MER1_type 0 2417 2373 25 51 0 0 chr4 98238451 98238490 -104089857 + AT_rich Low_complexity Low_complexity 1 39 0 621 289 132 25 chr4 98239500 98239735 -104088612 - MIR SINE MIR -2 260 1 476 18 0 0 chr4 98240686 98240741 -104087606 - L1PA4 LINE L1 -190 5965 5911 327 64 0 0 chr4 98240741 98240833 -104087514 + L1PA3 LINE L1 6106 6201 0 43494 42 1 1 chr4 98240849 98246995 -104081352 + L1PA3 LINE L1 12 6155 0 823 121 0 0 chr4 98247913 98248037 -104080310 - MER31A LTR ERV1 0 485 362 363 255 52 46 chr4 98248101 98248254 -104080093 + L1ME4a LINE L1 5927 6080 -41 1498 151 104 9 chr4 98248623 98248941 -104079406 - MER31A LTR ERV1 -137 348 1 337 339 102 75 chr4 98249388 98249642 -104078705 + L2 LINE L2 2994 3254 -18 240 368 16 8 chr4 98249678 98249803 -104078544 + L2 LINE L2 2164 2289 -1025 258 246 0 18 chr4 98249808 98249865 -104078482 + MIR SINE MIR 19 74 -188 209 241 9 61 chr4 98249916 98250039 -104078308 + MIR SINE MIR 88 259 -3 3224 271 158 34 chr4 98250464 98252214 -104076133 - L2 LINE L2 -5 3308 1339 395 335 63 33 chr4 98252431 98252645 -104075702 - MIR SINE MIR -27 235 16 181 267 17 17 chr4 98252730 98252790 -104075557 + L2 LINE L2 3254 3313 0 254 275 204 49 chr4 98252795 98252937 -104075410 - MIR SINE MIR -71 191 28 2300 167 3 3 chr4 98252945 98253335 -104075012 + MLT1B LTR MaLR 1 390 0 312 219 83 0 chr4 98253957 98254053 -104074294 - L1ME4a LINE L1 -41 6080 5977 617 270 6 0 chr4 98254458 98254617 -104073730 - L1ME4a LINE L1 -406 5715 5556 336 227 38 8 chr4 98254879 98255011 -104073336 + (TTATA)n Simple_repeat Simple_repeat 5 140 0 314 257 19 95 chr4 98255541 98255646 -104072701 + MIR SINE MIR 47 143 -119 28 71 0 0 chr4 98255900 98255956 -104072391 + AT_rich Low_complexity Low_complexity 1 56 0 1165 252 41 63 chr4 98256013 98256425 -104071922 - L2 LINE L2 0 3313 2911 488 208 10 10 chr4 98256442 98256543 -104071804 + MIR SINE MIR 162 262 0 24 53 0 0 chr4 98256563 98256601 -104071746 + AT_rich Low_complexity Low_complexity 1 38 0 2107 100 7 0 chr4 98258942 98259241 -104069106 + AluSx SINE Alu 1 301 -11 317 280 59 53 chr4 98259753 98259949 -104068398 + MIR SINE MIR 5 211 -51 471 73 0 0 chr4 98260609 98260677 -104067670 - L1PA4 LINE L1 -3 6152 6085 1308 135 34 60 chr4 98261693 98261960 -104066387 + L1MA8 LINE L1 5995 6254 -37 533 372 10 5 chr4 98262883 98263090 -104065257 + MIR SINE MIR 16 223 -39 486 280 53 15 chr4 98263537 98263669 -104064678 - MIR SINE MIR -79 183 47 682 227 0 0 chr4 98265763 98265882 -104062465 + FLAM_A SINE Alu 3 121 -12 21 71 0 0 chr4 98265961 98266003 -104062344 + AT_rich Low_complexity Low_complexity 1 42 0 266 332 35 26 chr4 98266387 98266415 -104061932 - L1MB4 LINE L1 -274 5906 5879 725 300 68 17 chr4 98266415 98266768 -104061579 - L1ME3A LINE L1 -287 5883 5513 859 276 59 13 chr4 98266772 98267076 -104061271 - L2 LINE L2 0 3313 2996 1473 145 4 0 chr4 98267311 98267559 -104060788 - L1MA3 LINE L1 -3 7721 7473 * 7416 34 0 0 chr4 98267547 98268607 -104059740 - L1PA4 LINE L1 0 6155 5097 4587 120 25 16 chr4 98268618 98269368 -104058979 - L1MA3 LINE L1 -256 7468 6709 1219 137 0 5 chr4 98269372 98269562 -104058785 - AluSg/x SINE Alu 0 310 122 19176 176 52 13 chr4 98269562 98276036 -104052311 - L1MA3 LINE L1 -819 6746 18 367 279 82 50 chr4 98276055 98276274 -104052073 - L1ME3A LINE L1 -843 5303 5078 243 241 43 64 chr4 98276284 98276425 -104051922 - L1 LINE L1 -1098 5048 4911 28 71 0 0 chr4 98276551 98276607 -104051740 + AT_rich Low_complexity Low_complexity 1 56 0 270 0 0 0 chr4 98277482 98277512 -104050835 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 515 246 156 27 chr4 98277517 98277741 -104050606 - L2 LINE L2 -14 3299 3047 8131 154 3 0 chr4 98277984 98280109 -104048238 - L1PA11 LINE L1 -1 6173 4026 184 185 15 15 chr4 98280653 98280718 -104047629 + (TA)n Simple_repeat Simple_repeat 1 65 0 1110 61 0 0 chr4 98282027 98282159 -104046188 + AluY SINE Alu 1 132 -179 481 295 0 0 chr4 98282574 98282686 -104045661 + L2 LINE L2 3199 3310 -3 24 67 0 0 chr4 98283084 98283129 -104045218 + AT_rich Low_complexity Low_complexity 1 45 0 190 348 0 0 chr4 98284568 98284614 -104043733 - L2 LINE L2 -13 3259 3214 186 133 0 0 chr4 98284947 98284977 -104043370 + (TTG)n Simple_repeat Simple_repeat 2 31 0 600 332 65 0 chr4 98285543 98285760 -104042587 + MIR SINE MIR 32 262 0 2232 114 13 3 chr4 98285963 98286270 -104042077 - AluSx SINE Alu -2 310 1 182 333 164 30 chr4 98286288 98286453 -104041894 - MIR SINE MIR -27 235 49 307 325 109 37 chr4 98286571 98286974 -104041373 + L2 LINE L2 2358 2789 -525 29 0 0 0 chr4 98288511 98288540 -104039807 + AT_rich Low_complexity Low_complexity 1 29 0 1393 120 0 15 chr4 98288833 98289033 -104039314 - AluSg SINE Alu -11 301 105 27379 33 1 0 chr4 98289041 98293136 -104035211 - L1PA4 LINE L1 -3 6152 2056 800 149 0 0 chr4 98293136 98293250 -104035097 - AluSg SINE Alu -196 114 1 1483 103 5 0 chr4 98293602 98293796 -104034551 - AluSq SINE Alu -14 299 105 377 215 37 56 chr4 98293962 98294069 -104034278 + L2 LINE L2 3151 3255 -17 239 54 27 0 chr4 98294078 98294115 -104034232 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 363 349 21 10 chr4 98294122 98294314 -104034033 - L2 LINE L2 -980 2334 2141 2833 232 30 21 chr4 98294458 98295135 -104033212 - MER76 LTR ERV -5 683 1 192 262 0 0 chr4 98295135 98295177 -104033170 + MIR SINE MIR 95 136 -126 283 363 42 0 chr4 98295298 98295491 -104032856 - L2 LINE L2 -1357 1957 1757 213 235 0 0 chr4 98296969 98297020 -104031327 + A-rich Low_complexity Low_complexity 1 51 0 180 0 0 0 chr4 98297710 98297730 -104030617 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 406 345 26 22 chr4 98298068 98298294 -104030053 + MIR SINE MIR 26 252 -10 24 0 0 0 chr4 98298578 98298602 -104029745 + AT_rich Low_complexity Low_complexity 1 24 0 677 299 43 17 chr4 98300333 98300567 -104027780 - MIR SINE MIR -21 241 2 361 282 183 25 chr4 98301018 98301220 -104027127 + MIR SINE MIR 23 256 -6 671 231 0 0 chr4 98301494 98301628 -104026719 + AluJo SINE Alu 1 134 -178 457 259 45 0 chr4 98302003 98302115 -104026232 + MLT1I LTR MaLR 58 174 -235 830 326 133 30 chr4 98302122 98302995 -104025352 - L2 LINE L2 -251 3021 2067 2033 134 61 3 chr4 98304067 98304395 -104023952 + MER7A DNA MER2_type 2 346 0 207 0 0 0 chr4 98305211 98305234 -104023113 + (TA)n Simple_repeat Simple_repeat 2 24 0 497 303 143 0 chr4 98305314 98305552 -104022795 + L1MC/D LINE L1 5544 5815 -1993 2251 94 13 3 chr4 98305663 98305961 -104022386 + AluSx SINE Alu 1 301 -11 237 202 126 109 chr4 98306209 98306328 -104022019 - L2 LINE L2 -1 3312 3192 * 349 339 63 11 chr4 98306295 98306469 -104021878 + MIR SINE MIR 75 257 -5 5708 136 45 20 chr4 98306474 98307443 -104020904 + Tigger1 DNA MER2_type 1 993 -1425 2337 157 75 0 chr4 98307443 98307845 -104020502 - MSTB1 LTR MaLR 0 432 1 7774 133 81 5 chr4 98307848 98309174 -104019173 + Tigger1 DNA MER2_type 992 2418 0 203 159 45 0 chr4 98309824 98309868 -104018479 + T-rich Low_complexity Low_complexity 2 47 0 242 366 37 37 chr4 98311433 98311567 -104016780 + L2 LINE L2 3134 3267 -5 26 30 0 0 chr4 98312309 98312342 -104016005 + AT_rich Low_complexity Low_complexity 1 33 0 447 288 41 18 chr4 98313846 98314016 -104014331 + MIR SINE MIR 78 251 -11 219 362 47 16 chr4 98314093 98314220 -104014127 - L2 LINE L2 -5 3267 3137 309 149 37 103 chr4 98314297 98314404 -104013943 + MER5B DNA MER1_type 2 101 -77 2150 82 46 0 chr4 98314512 98314794 -104013553 + AluY SINE Alu 1 295 -16 231 310 122 28 chr4 98316190 98316368 -104011979 - MIR SINE MIR -16 246 38 2150 96 0 0 chr4 98316385 98316702 -104011645 - AluY SINE Alu 0 317 1 3513 60 2 0 chr4 98317376 98317824 -104010523 - L1PA5 LINE L1 0 6154 5706 1781 175 54 3 chr4 98317935 98318266 -104010081 - MER7A DNA MER2_type 0 346 1 1389 226 3 54 chr4 98320388 98320777 -104007570 - MLT1A2 LTR MaLR -2 372 4 278 356 33 56 chr4 98321339 98321609 -104006738 + L2 LINE L2 2852 3115 -157 2151 137 0 3 chr4 98321706 98322019 -104006328 + AluSx SINE Alu 1 312 0 29 0 0 0 chr4 98322227 98322256 -104006091 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 98323179 98323200 -104005147 + AT_rich Low_complexity Low_complexity 1 21 0 473 271 65 19 chr4 98323977 98324132 -104004215 + MIR SINE MIR 20 181 -81 207 238 123 90 chr4 98325248 98325370 -104002977 + MIR SINE MIR 20 145 -63 899 215 118 0 chr4 98325416 98325611 -104002736 + MER58A DNA MER1_type 6 223 -1 280 272 54 33 chr4 98327627 98327719 -104000628 + MIR SINE MIR 20 113 -95 216 182 0 0 chr4 98328958 98329002 -103999345 + (CA)n Simple_repeat Simple_repeat 1 44 0 227 77 0 26 chr4 98329642 98329681 -103998666 + (TA)n Simple_repeat Simple_repeat 2 39 0 1964 102 105 14 chr4 98330227 98330571 -103997776 - THE1C LTR MaLR 0 375 1 788 179 19 2 chr4 98330811 98330985 -103997362 - L1MB1 LINE L1 -3 6165 6006 518 187 28 0 chr4 98331176 98331283 -103997064 + MER103 DNA DNA 9 118 -48 1301 287 138 10 chr4 98331831 98332412 -103995935 - MER115 DNA AcHobo 0 693 39 202 135 0 27 chr4 98332966 98333003 -103995344 + (GAA)n Simple_repeat Simple_repeat 3 38 0 * 205 295 16 0 chr4 98332980 98333041 -103995306 + GA-rich Low_complexity Low_complexity 4 65 0 448 136 0 0 chr4 98335937 98336003 -103992344 + L2 LINE L2 3247 3312 -1 200 341 23 0 chr4 98336659 98336747 -103991600 + CT-rich Low_complexity Low_complexity 1 90 0 197 159 23 0 chr4 98337252 98337296 -103991051 + (TA)n Simple_repeat Simple_repeat 1 45 0 22 35 0 0 chr4 98339165 98339194 -103989153 + AT_rich Low_complexity Low_complexity 1 29 0 259 309 52 10 chr4 98339234 98339331 -103989016 - MIR3 SINE MIR -16 192 92 202 274 250 0 chr4 98339500 98339584 -103988763 - MIR3 SINE MIR -43 165 61 183 275 0 50 chr4 98340462 98340542 -103987805 - L2 LINE L2 -4 3309 3234 2199 128 0 3 chr4 98342425 98342730 -103985617 - AluSx SINE Alu -8 304 1 1472 300 32 23 chr4 98343968 98344560 -103983787 - L2 LINE L2 0 3313 2719 214 254 66 0 chr4 98345363 98345485 -103982862 + (CGGTG)n Simple_repeat Simple_repeat 3 132 0 1749 139 45 39 chr4 98345565 98345902 -103982445 + MER2 DNA MER2_type 7 345 0 231 36 0 0 chr4 98346923 98346951 -103981396 + (CA)n Simple_repeat Simple_repeat 1 28 0 475 316 65 47 chr4 98347200 98347415 -103980932 - MIR SINE MIR -24 238 20 2875 7 0 0 chr4 98347818 98348128 -103980219 + AluYa5 SINE Alu 1 310 -1 324 0 0 0 chr4 98348674 98348710 -103979637 + (CA)n Simple_repeat Simple_repeat 2 37 0 228 317 78 39 chr4 98348998 98349178 -103979169 - L2 LINE L2 -229 3043 2857 357 398 71 11 chr4 98349299 98349568 -103978779 - L2 LINE L2 -106 3166 2882 262 341 71 28 chr4 98349690 98349901 -103978446 - L2 LINE L2 -557 2757 2538 774 345 165 17 chr4 98350097 98350917 -103977430 - L2 LINE L2 -1261 2053 1113 917 201 75 0 chr4 98351076 98351275 -103977072 - MLT1J2 LTR MaLR -142 308 95 204 333 152 14 chr4 98351310 98351448 -103976899 - L2 LINE L2 -665 2649 2493 746 315 15 15 chr4 98351519 98351792 -103976555 + L2 LINE L2 3041 3313 0 2387 73 3 3 chr4 98352069 98352371 -103975976 + AluSx SINE Alu 1 302 -10 248 113 148 87 chr4 98352440 98352555 -103975792 + L1MA7 LINE L1 6144 6265 -26 1694 126 42 0 chr4 98353849 98354112 -103974235 + MER1B DNA MER1_type 1 274 -65 361 146 10 52 chr4 98354137 98354233 -103974114 + MER1B DNA MER1_type 242 333 0 470 129 0 0 chr4 98354585 98354655 -103973692 - AluSc SINE Alu -14 295 226 25 51 0 0 chr4 98354655 98354694 -103973653 + AT_rich Low_complexity Low_complexity 1 39 0 708 292 49 16 chr4 98354795 98355038 -103973309 + MIR SINE MIR 12 262 0 25 31 0 0 chr4 98359380 98359412 -103968935 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr4 98359560 98359589 -103968758 + AT_rich Low_complexity Low_complexity 1 29 0 23 78 0 0 chr4 98359625 98359676 -103968671 + AT_rich Low_complexity Low_complexity 1 51 0 998 233 133 47 chr4 98359945 98360412 -103967935 - MLT1E3 LTR MaLR -117 507 1 192 350 168 0 chr4 98360423 98360566 -103967781 - L2 LINE L2 -168 3145 2979 1933 115 17 24 chr4 98360572 98360882 -103967465 - AluSx SINE Alu 0 308 1 1761 155 81 0 chr4 98360932 98361254 -103967093 - MER7A DNA MER2_type 0 346 1 2257 126 0 0 chr4 98361907 98362217 -103966130 + AluSp SINE Alu 1 310 -3 388 349 0 0 chr4 98363017 98363143 -103965204 + MIR SINE MIR 17 142 -66 194 162 0 0 chr4 98363304 98363341 -103965006 - L2 LINE L2 -7 3306 3270 261 242 81 0 chr4 98363367 98363429 -103964918 + MIR3 SINE MIR 110 176 -32 23 33 0 0 chr4 98363584 98363614 -103964733 + AT_rich Low_complexity Low_complexity 1 30 0 28 48 0 0 chr4 98365520 98365562 -103962785 + AT_rich Low_complexity Low_complexity 1 42 0 246 95 0 0 chr4 98366403 98366445 -103961902 + (TG)n Simple_repeat Simple_repeat 1 42 0 204 40 0 0 chr4 98366447 98366472 -103961875 + (GA)n Simple_repeat Simple_repeat 2 26 0 2182 117 0 0 chr4 98367478 98367776 -103960571 + AluSg SINE Alu 1 298 -12 1782 196 0 17 chr4 98368287 98368639 -103959708 - MER7A DNA MER2_type -1 345 2 341 246 67 0 chr4 98369260 98369394 -103958953 + MER103 DNA DNA 4 146 -20 1984 155 20 0 chr4 98369730 98370034 -103958313 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr4 98370107 98370130 -103958217 + AT_rich Low_complexity Low_complexity 1 23 0 465 325 88 0 chr4 98371684 98371844 -103956503 - L2 LINE L2 -2 3270 3097 428 314 67 52 chr4 98372132 98372326 -103956021 + MIR SINE MIR 16 212 -50 320 326 94 78 chr4 98375560 98375879 -103952468 - L2 LINE L2 0 3272 2949 571 256 22 17 chr4 98376587 98376767 -103951580 - HAL1 LINE L1 -2185 322 142 278 236 112 25 chr4 98376902 98377063 -103951284 - L1M LINE L1 -2379 5429 5255 49 71 0 0 chr4 98377140 98377238 -103951109 + AT_rich Low_complexity Low_complexity 1 98 0 353 43 0 0 chr4 98377407 98377453 -103950894 - MADE1 DNA Mariner 0 80 35 1998 198 37 30 chr4 98378578 98379007 -103949340 + MSTB1 LTR MaLR 1 432 0 504 362 38 32 chr4 98379066 98379541 -103948806 + HERV16 LTR ERVL 1051 1528 -3468 1911 183 42 69 chr4 98379564 98380051 -103948296 + MLT1D LTR MaLR 1 475 -30 2094 188 8 13 chr4 98380051 98380449 -103947898 + MLT2C1 LTR ERVL 2 397 0 1911 183 42 69 chr4 98380449 98380480 -103947867 + MLT1D LTR MaLR 475 505 0 736 364 33 25 chr4 98380732 98381221 -103947126 + HERV16 LTR ERVL 1989 2481 -3283 370 299 58 45 chr4 98381500 98381654 -103946693 + HERV16 LTR ERVL 2557 2712 -2284 512 253 130 55 chr4 98381742 98381995 -103946352 + LTR47A LTR ERVL 1 272 -180 261 93 0 0 chr4 98382096 98382188 -103946159 + L1PA3 LINE L1 6110 6201 0 7956 65 110 6 chr4 98382204 98383375 -103944972 + L1P LINE L1 12 1304 -4842 21 0 0 0 chr4 98383542 98383563 -103944784 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr4 98383586 98383609 -103944738 + (T)n Simple_repeat Simple_repeat 1 23 0 6103 38 0 0 chr4 98383611 98384374 -103943973 - L1HS LINE L1 -1 6154 5392 3856 148 9 9 chr4 98384374 98385075 -103943272 - L1PA6 LINE L1 -9 6145 5445 41994 36 22 1 chr4 98385186 98390899 -103937448 - L1PA3 LINE L1 -129 6026 192 1671 281 68 63 chr4 98491051 98492196 -103836151 - L2 LINE L2 0 3313 2177 217 194 45 104 chr4 98492204 98492271 -103836076 - L2 LINE L2 -3166 148 86 1423 52 0 0 chr4 98494039 98494213 -103834134 - AluY SINE Alu -1 310 137 2241 85 0 23 chr4 98494433 98494740 -103833607 - AluSg SINE Alu -10 300 1 1465 175 32 6 chr4 98497521 98497836 -103830511 + MER33 DNA MER1_type 1 323 -1 674 215 52 41 chr4 98497917 98498089 -103830258 + MIR SINE MIR 16 189 -73 1989 182 83 2 chr4 98498297 98498693 -103829654 + MSTA LTR MaLR 1 428 0 872 189 18 83 chr4 98499989 98500206 -103828141 + MER20 DNA MER1_type 2 204 -15 2284 94 3 7 chr4 98500241 98500548 -103827799 + AluSx SINE Alu 1 306 -6 328 345 95 0 chr4 98500729 98500897 -103827450 + MIR SINE MIR 48 231 -31 384 340 94 19 chr4 98500956 98501274 -103827073 + L2 LINE L2 1880 2221 -1093 331 314 25 25 chr4 98501390 98501511 -103826836 + L2 LINE L2 3102 3222 -50 2269 84 13 0 chr4 98501653 98501951 -103826396 - AluSp SINE Alu -11 302 1 241 287 11 69 chr4 98502055 98502142 -103826205 + L2 LINE L2 3189 3270 -2 186 103 0 0 chr4 98503914 98503943 -103824404 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 22 35 0 0 chr4 98504059 98504088 -103824259 + AT_rich Low_complexity Low_complexity 1 29 0 836 293 23 5 chr4 98504110 98504325 -103824022 - MIR SINE MIR -40 222 4 401 221 38 113 chr4 98504453 98504666 -103823681 + MER112 DNA MER1_type 41 237 -23 295 313 125 21 chr4 98504666 98504810 -103823537 + MER5B DNA MER1_type 19 177 -1 7345 150 19 1 chr4 98505165 98507226 -103821121 - L1PA11 LINE L1 -2 6172 4091 2087 140 138 5 chr4 98507322 98507700 -103820647 + MSTA LTR MaLR 1 428 0 1513 192 134 0 chr4 98507700 98508005 -103820342 - MER7A DNA MER2_type 0 346 1 34 0 0 0 chr4 98508292 98508326 -103820021 + AT_rich Low_complexity Low_complexity 1 34 0 668 101 52 9 chr4 98508438 98508786 -103819561 + (TA)n Simple_repeat Simple_repeat 1 363 0 651 107 48 0 chr4 98508804 98509251 -103819096 + (TA)n Simple_repeat Simple_repeat 1 468 0 195 126 58 11 chr4 98509263 98509350 -103818997 + (TA)n Simple_repeat Simple_repeat 2 92 0 734 197 163 6 chr4 98510277 98510455 -103817892 - MER20 DNA MER1_type -13 206 1 2287 130 28 6 chr4 98510804 98511158 -103817189 + THE1B LTR MaLR 1 362 -2 315 331 84 19 chr4 98511362 98511625 -103816722 - MLT1J1 LTR MaLR -9 437 158 712 344 66 5 chr4 98511625 98512006 -103816341 + ERVL LTR ERVL 4626 5029 -735 882 144 0 0 chr4 98512912 98513037 -103815310 + FLAM_C SINE Alu 3 127 -6 304 221 0 36 chr4 98513077 98513217 -103815130 + T-rich Low_complexity Low_complexity 1 135 0 1884 230 138 7 chr4 98513427 98513611 -103814736 + L1MC4 LINE L1 6460 6619 -1423 456 91 0 0 chr4 98513611 98513677 -103814670 + (TG)n Simple_repeat Simple_repeat 1 66 0 1884 230 138 7 chr4 98513677 98514049 -103814298 + L1MC4 LINE L1 6619 7089 -953 2464 223 45 12 chr4 98514051 98514446 -103813901 + L1MC4 LINE L1 7240 7666 -376 797 143 8 15 chr4 98514446 98514579 -103813768 + FLAM_A SINE Alu 1 132 -1 2464 223 45 12 chr4 98514579 98514825 -103813522 + L1MC4 LINE L1 7666 7902 -140 4380 129 15 4 chr4 98515026 98515706 -103812641 - L1PA15 LINE L1 -19 6146 5460 1160 294 26 39 chr4 98515730 98516190 -103812157 + ERVL LTR ERVL 2185 2638 -3126 240 279 66 59 chr4 98516435 98516571 -103811776 + MLT1J2 LTR MaLR 232 368 -222 929 276 29 32 chr4 98516680 98517021 -103811326 - MER58B DNA MER1_type 0 341 2 501 326 46 15 chr4 98517024 98517220 -103811127 - MLT1J2 LTR MaLR -8 442 241 445 147 0 53 chr4 98518016 98518111 -103810236 - L1MB4 LINE L1 -2 6178 6089 309 285 62 54 chr4 98518410 98518540 -103809807 + MLT1I LTR MaLR 106 236 -173 249 227 11 57 chr4 98518602 98518690 -103809657 + MLT1J2 LTR MaLR 367 450 0 31 26 0 0 chr4 98518925 98518963 -103809384 + AT_rich Low_complexity Low_complexity 1 38 0 449 305 89 16 chr4 98519024 98519270 -103809077 - L1ME LINE L1 -529 5592 5329 2859 88 0 75 chr4 98519290 98519758 -103808589 - L1PA7 LINE L1 -2 6152 5720 3281 69 6 0 chr4 98519758 98520496 -103807851 + L1P3 LINE L1 4933 5674 -480 25 63 0 38 chr4 98520530 98520609 -103807738 + AT_rich Low_complexity Low_complexity 1 76 0 11214 127 39 2 chr4 98521193 98522959 -103805388 + L1MA2 LINE L1 1359 3189 -4376 9734 113 24 20 chr4 98522969 98523744 -103804603 - L1PA7 LINE L1 -15 6454 5684 243 0 0 0 chr4 98523744 98523771 -103804576 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9734 113 24 20 chr4 98523771 98529088 -103799259 - L1PA7 LINE L1 -785 5684 8 16418 158 7 15 chr4 98529095 98529201 -103799146 + L1MA2 LINE L1 3175 3280 -4443 1249 136 54 23 chr4 98529201 98529422 -103798925 + MER30 DNA MER1_type 3 230 0 16418 158 7 15 chr4 98529422 98533895 -103794452 + L1MA2 LINE L1 3280 7722 -1 25 31 0 0 chr4 98533896 98533928 -103794419 + AT_rich Low_complexity Low_complexity 1 32 0 416 343 34 17 chr4 98533939 98534117 -103794230 - MIR3 SINE MIR -7 201 21 5652 141 20 15 chr4 98536125 98537297 -103791050 - L1PA16 LINE L1 0 6166 4987 4776 199 11 39 chr4 98537296 98538468 -103789879 + L1PA16 LINE L1 3836 4974 -1172 * 786 281 26 4 chr4 98539325 98539553 -103788794 - MIR SINE MIR -28 234 2 5088 90 21 7 chr4 98541013 98541725 -103786622 + L1PA11 LINE L1 5448 6169 -5 277 294 169 7 chr4 98542581 98542717 -103785630 - MER5A DNA MER1_type -24 165 8 31 26 0 0 chr4 98543072 98543110 -103785237 + AT_rich Low_complexity Low_complexity 1 38 0 227 348 51 43 chr4 98543316 98543454 -103784893 - L2 LINE L2 -19 3253 3115 5888 178 36 13 chr4 98543763 98545974 -103782373 + L1PA16 LINE L1 3895 6163 -3 2235 109 26 0 chr4 98546072 98546376 -103781971 + AluSx SINE Alu 1 312 0 1620 183 118 6 chr4 98546575 98546931 -103781416 + MSTD LTR MaLR 1 396 0 1126 261 43 7 chr4 98547133 98547413 -103780934 + L1MB1 LINE L1 1 290 -5601 10271 214 36 22 chr4 98547417 98550919 -103777428 + L1MB1 LINE L1 2292 5685 -307 2220 92 0 4 chr4 98550925 98551245 -103777102 - AluY SINE Alu 0 319 1 324 252 108 18 chr4 98551252 98551363 -103776984 - HAL1 LINE L1 -1036 1471 1351 1775 190 52 3 chr4 98551623 98551971 -103776376 + MLT1A1 LTR MaLR 1 365 0 359 293 98 68 chr4 98551974 98552240 -103776107 - HAL1 LINE L1 -2199 308 35 1706 146 125 0 chr4 98552306 98552627 -103775720 - MER46B DNA MER2_type 0 236 1 430 245 20 40 chr4 98553075 98553238 -103775109 - MLT1J LTR MaLR -22 470 268 4914 66 0 0 chr4 98553541 98554163 -103774184 + L1PA7 LINE L1 5533 6154 0 21 71 0 0 chr4 98555399 98555441 -103772906 + AT_rich Low_complexity Low_complexity 1 42 0 279 238 12 38 chr4 98555582 98555662 -103772685 - MIR SINE MIR -66 196 119 186 43 0 0 chr4 98556589 98556612 -103771735 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 314 241 204 0 chr4 98557747 98557855 -103770492 + MIR SINE MIR 4 133 -129 271 397 16 8 chr4 98557929 98558055 -103770292 + MER5A DNA MER1_type 52 178 -11 571 224 0 0 chr4 98558333 98558440 -103769907 - FLAM_A SINE Alu -35 107 1 677 93 0 21 chr4 98558472 98558607 -103769740 + AluSg/x SINE Alu 195 309 0 246 128 0 0 chr4 98558622 98558669 -103769678 + Alu SINE Alu 256 302 0 197 214 186 29 chr4 98558887 98558957 -103769390 - L2 LINE L2 -6 3307 3227 1094 236 31 20 chr4 98559012 98559305 -103769042 + L1MD3 LINE L1 7699 7994 -1 1401 151 5 0 chr4 98559348 98559553 -103768794 - AluJo SINE Alu -21 291 86 331 305 8 51 chr4 98560067 98560185 -103768162 - L2 LINE L2 -1 3312 3200 183 156 0 0 chr4 98560207 98560239 -103768108 + T-rich Low_complexity Low_complexity 4 35 0 2864 147 8 10 chr4 98561483 98561981 -103766366 - L1MA4 LINE L1 -6 6294 5798 2161 116 0 3 chr4 98562003 98562305 -103766042 - AluSx SINE Alu -11 301 1 534 117 0 0 chr4 98562305 98562382 -103765965 - L1MA4 LINE L1 -614 5686 5610 1552 197 24 14 chr4 98562949 98563244 -103765103 - AluJo SINE Alu -14 298 1 180 292 15 15 chr4 98563329 98563394 -103764953 + L2 LINE L2 3167 3231 -82 2119 234 11 35 chr4 98563519 98564067 -103764280 - L1MC4a LINE L1 -1 7807 7273 219 353 36 36 chr4 98564372 98564539 -103763808 - L2 LINE L2 -247 3025 2859 270 0 0 0 chr4 98564661 98564691 -103763656 + (TC)n Simple_repeat Simple_repeat 1 30 0 180 0 0 0 chr4 98564690 98564710 -103763637 + (CA)n Simple_repeat Simple_repeat 1 20 0 * 1336 261 20 45 chr4 98565493 98565895 -103762452 + MLT1E LTR MaLR 200 591 -2 900 270 306 2 chr4 98565898 98566050 -103762297 + MLT1E-int LTR MaLR 14 119 -1252 1838 142 33 10 chr4 98566050 98566353 -103761994 + AluJb SINE Alu 1 310 -2 900 270 306 2 chr4 98566353 98566655 -103761692 + MLT1E-int LTR MaLR 119 606 -765 361 340 6 19 chr4 98566866 98567025 -103761322 + MLT1E-int LTR MaLR 692 848 -523 779 251 51 115 chr4 98567261 98567696 -103760651 + MLT1E-int LTR MaLR 961 1367 -4 527 178 195 34 chr4 98567699 98567817 -103760530 + MLT1E LTR MaLR 1 137 -456 1426 164 137 4 chr4 98568776 98569038 -103759309 + AluJo SINE Alu 1 297 -5 225 0 0 0 chr4 98569278 98569303 -103759044 + (TTA)n Simple_repeat Simple_repeat 1 25 0 988 194 106 38 chr4 98569422 98569715 -103758632 + Charlie4a DNA MER1_type 174 486 -22 998 227 227 15 chr4 98569813 98570337 -103758010 - L1ME LINE L1 -2677 3403 2769 1534 231 97 73 chr4 98570341 98570998 -103757349 - L1ME LINE L1 -4634 1446 749 1693 154 3 68 chr4 98570998 98571309 -103757038 + AluJb SINE Alu 1 291 -21 1534 231 97 73 chr4 98571309 98571739 -103756608 - L1ME LINE L1 -5331 749 331 1803 217 76 9 chr4 98571740 98572173 -103756174 - MLT1C LTR MaLR 0 467 6 782 270 53 50 chr4 98572181 98572322 -103756025 - L1ME LINE L1 -5738 332 193 369 0 0 0 chr4 98572322 98572363 -103755984 + (TA)n Simple_repeat Simple_repeat 2 42 0 782 270 53 50 chr4 98572363 98572540 -103755807 - L1ME LINE L1 -5877 193 13 2311 123 36 25 chr4 98572541 98572900 -103755447 + THE1B LTR MaLR 2 364 0 12143 86 2 1 chr4 98572900 98574478 -103753869 + THE1B-int LTR MaLR 1 1580 0 2379 131 28 14 chr4 98574478 98574837 -103753510 + THE1B LTR MaLR 1 364 0 484 226 60 70 chr4 98575047 98575246 -103753101 - MIR SINE MIR 0 262 66 198 118 0 0 chr4 98575665 98575699 -103752648 + (TG)n Simple_repeat Simple_repeat 1 34 0 447 309 124 27 chr4 98577322 98577694 -103750653 - LTR33 LTR ERVL 0 521 114 560 305 47 21 chr4 98578351 98578541 -103749806 - MIR3 SINE MIR -1 207 13 228 167 0 0 chr4 98579905 98579953 -103748394 + (TG)n Simple_repeat Simple_repeat 2 49 0 960 214 93 37 chr4 98580194 98580352 -103747995 + MLT1A2 LTR MaLR 1 149 -225 1708 118 76 45 chr4 98580352 98580641 -103747706 + AluSx SINE Alu 1 298 -14 960 214 93 37 chr4 98580641 98580673 -103747674 + MLT1A2 LTR MaLR 149 178 -196 1066 100 11 11 chr4 98580673 98580853 -103747494 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 960 214 93 37 chr4 98580853 98581083 -103747264 + MLT1A2 LTR MaLR 178 374 0 486 300 88 0 chr4 98581874 98582034 -103746313 + MER96 DNA MER1_type? 1 174 -1 1415 191 229 3 chr4 98582504 98582871 -103745476 + MSTB2 LTR MaLR 1 450 -7 724 326 83 11 chr4 98582883 98583245 -103745102 - LTR16B LTR ERVL -76 388 1 275 301 139 46 chr4 98583246 98583592 -103744755 + L2 LINE L2 401 778 -2536 357 267 42 61 chr4 98583680 98583845 -103744502 + L2 LINE L2 3151 3312 -1 201 74 0 0 chr4 98583881 98583908 -103744439 + (AATTG)n Simple_repeat Simple_repeat 3 29 0 1678 139 20 37 chr4 98584114 98584409 -103743938 - AluJo SINE Alu -18 294 5 202 226 12 36 chr4 98584682 98584766 -103743581 + T-rich Low_complexity Low_complexity 1 82 0 1165 220 51 104 chr4 98586192 98586374 -103741973 + MLT1C LTR MaLR 1 191 -276 1952 136 3 11 chr4 98586374 98586693 -103741654 + AluSx SINE Alu 1 317 0 1165 220 51 104 chr4 98586693 98587000 -103741347 + MLT1C LTR MaLR 191 465 -2 7696 23 0 0 chr4 98588414 98589870 -103738477 - L1PA3 LINE L1 -3 6152 4698 6388 30 10 5 chr4 98589872 98590652 -103737695 + L1PA3 LINE L1 3920 4703 -1443 278 314 49 41 chr4 98591023 98591181 -103737166 - MIR SINE MIR -58 150 16 29 0 0 0 chr4 98591320 98591349 -103736998 + AT_rich Low_complexity Low_complexity 1 29 0 253 0 54 0 chr4 98591477 98591514 -103736833 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 676 148 0 57 chr4 98591526 98591648 -103736699 + FLAM_A SINE Alu 6 120 -22 303 333 8 26 chr4 98591664 98591781 -103736566 - L1MC4 LINE L1 -1339 6703 6589 1575 164 10 69 chr4 98591844 98592149 -103736198 + AluSx SINE Alu 9 295 -17 2125 122 3 0 chr4 98593656 98593952 -103734395 + AluSg SINE Alu 1 297 -13 718 271 18 37 chr4 98593971 98594189 -103734158 + MIR SINE MIR 11 224 -38 23 0 0 0 chr4 98594308 98594331 -103734016 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 98595304 98595326 -103733021 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr4 98595974 98596000 -103732347 + AT_rich Low_complexity Low_complexity 1 26 0 215 179 18 18 chr4 98596213 98596269 -103732078 + T-rich Low_complexity Low_complexity 2 57 0 203 184 0 0 chr4 98597851 98597889 -103730458 + A-rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr4 98599035 98599060 -103729287 + AT_rich Low_complexity Low_complexity 1 25 0 430 260 0 143 chr4 98599180 98599376 -103728971 - MER5B DNA MER1_type -10 168 1 2164 109 76 25 chr4 98599386 98599743 -103728604 - THE1C LTR MaLR 0 375 1 326 362 95 23 chr4 98600066 98600287 -103728060 - MIR SINE MIR -6 256 20 14556 134 27 8 chr4 98600412 98602783 -103725564 - Tigger1 DNA MER2_type -1 2417 1 306 0 0 0 chr4 98603184 98603218 -103725129 + (TG)n Simple_repeat Simple_repeat 2 35 0 315 371 60 0 chr4 98603517 98603633 -103724714 - L2 LINE L2 -16 3256 3134 242 272 97 3 chr4 98603955 98604058 -103724289 + MIR SINE MIR 44 153 -77 2023 100 52 0 chr4 98604251 98604542 -103723805 + AluSx SINE Alu 1 305 0 191 103 26 0 chr4 98604661 98604700 -103723647 + T-rich Low_complexity Low_complexity 1 40 0 15649 115 31 24 chr4 98604754 98606134 -103722213 + L1P LINE L1 11 1380 -4766 2324 92 3 0 chr4 98606134 98606429 -103721918 + AluY SINE Alu 1 296 -15 15649 115 31 24 chr4 98606429 98607547 -103720800 + L1P LINE L1 1380 2529 -3617 6495 51 2 0 chr4 98607547 98608349 -103719998 + L1PA6 LINE L1 5339 6143 -11 15649 115 31 24 chr4 98608349 98608367 -103719980 + L1P LINE L1 2529 2545 -3601 877 349 38 26 chr4 98608372 98608874 -103719473 - L2 LINE L2 -609 2705 2198 237 185 0 0 chr4 98608878 98608943 -103719404 + (TA)n Simple_repeat Simple_repeat 1 65 0 255 122 0 0 chr4 98608992 98609041 -103719306 + (TA)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr4 98610310 98610332 -103718015 + AT_rich Low_complexity Low_complexity 1 22 0 233 146 18 36 chr4 98610555 98610610 -103717737 - LTR33A LTR ERVL -3 520 467 2064 123 17 0 chr4 98611668 98611961 -103716386 + AluSx SINE Alu 1 298 -14 249 378 74 0 chr4 98612083 98612231 -103716116 - L2 LINE L2 -5 3267 3109 530 271 160 37 chr4 98612457 98612726 -103715621 - MER102b DNA MER1_type -39 302 1 1916 100 0 115 chr4 98613176 98613311 -103715036 + AluSx SINE Alu 2 151 -151 2302 76 0 3 chr4 98613311 98613600 -103714747 + AluY SINE Alu 1 288 -23 1916 100 0 115 chr4 98613600 98613803 -103714544 + AluSx SINE Alu 151 301 -1 21 36 0 0 chr4 98615124 98615152 -103713195 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 98615399 98615423 -103712924 + AT_rich Low_complexity Low_complexity 1 24 0 437 303 207 10 chr4 98616587 98616795 -103711552 + MIR SINE MIR 11 259 -3 273 139 0 0 chr4 98617222 98617271 -103711076 - MLT2B1 LTR ERVL -8 546 408 1438 211 36 35 chr4 98617321 98617694 -103710653 - MLT2B1 LTR ERVL -53 361 1 502 55 0 0 chr4 98617858 98617931 -103710416 - Alu SINE Alu -2 307 235 258 61 0 0 chr4 98617931 98617964 -103710383 - Alu SINE Alu -270 33 1 24 32 0 0 chr4 98618015 98618046 -103710301 + AT_rich Low_complexity Low_complexity 1 31 0 580 223 0 0 chr4 98618720 98618852 -103709495 + FLAM_A SINE Alu 3 134 0 434 273 94 16 chr4 98619472 98619600 -103708747 - L2 LINE L2 0 3313 3176 188 308 46 0 chr4 98619688 98619753 -103708594 + L2 LINE L2 3166 3233 -39 1436 193 29 11 chr4 98619861 98620135 -103708212 + AluJo SINE Alu 1 279 -33 246 32 0 0 chr4 98620135 98620166 -103708181 + (GGGAA)n Simple_repeat Simple_repeat 2 32 0 437 95 40 0 chr4 98620190 98620264 -103708083 + A-rich Low_complexity Low_complexity 5 81 0 636 293 99 43 chr4 98620265 98620447 -103707900 - MLT1G LTR MaLR -27 563 393 1176 117 10 25 chr4 98620447 98620644 -103707703 - L1PA16 LINE L1 -9 6157 5964 636 293 99 43 chr4 98620644 98620997 -103707350 - MLT1G LTR MaLR -197 393 26 1571 164 7 115 chr4 98620997 98621406 -103706941 - MLT1A1 LTR MaLR 0 365 1 636 293 99 43 chr4 98621406 98621434 -103706913 - MLT1G LTR MaLR -564 26 1 7623 26 1 0 chr4 98623033 98624697 -103703650 + L1PA4 LINE L1 4491 6155 0 2245 263 54 31 chr4 98624747 98625795 -103702552 + L1MC4 LINE L1 6760 7831 -211 302 112 0 0 chr4 98625802 98625857 -103702490 + Alu SINE Alu 1 41 -261 581 224 53 53 chr4 98625893 98626063 -103702284 - MIR SINE MIR -91 171 2 1887 134 16 23 chr4 98626130 98626435 -103701912 + AluSx SINE Alu 1 303 -9 1949 88 38 69 chr4 98627998 98628318 -103700029 + L1PA11 LINE L1 5865 6174 0 394 345 41 18 chr4 98628517 98628688 -103699659 + MIR SINE MIR 49 223 -39 549 224 53 53 chr4 98629076 98629246 -103699101 - MIR SINE MIR -91 171 2 591 280 76 6 chr4 98629525 98629682 -103698665 - MER5A DNA MER1_type 0 189 22 397 218 100 0 chr4 98632313 98632423 -103695924 - MIR SINE MIR -29 233 113 2669 112 0 6 chr4 98632703 98633069 -103695278 + THE1B LTR MaLR 1 364 0 2724 165 12 4 chr4 98633079 98633588 -103694759 - L1MC2 LINE L1 -24 6320 5808 209 288 68 27 chr4 98633632 98633705 -103694642 - L2 LINE L2 -47 3225 3150 1208 214 115 33 chr4 98633724 98634089 -103694258 - MSTD LTR MaLR -1 395 1 196 293 0 80 chr4 98634180 98634255 -103694092 - L2 LINE L2 -190 3082 3014 350 189 209 71 chr4 98634373 98634569 -103693778 + L2 LINE L2 3091 3313 0 3110 143 91 15 chr4 98634744 98635131 -103693216 - MER7C DNA MER2_type -2439 589 146 2303 94 0 0 chr4 98635131 98635428 -103692919 - AluSg1 SINE Alu -6 303 7 3110 143 91 15 chr4 98635428 98635587 -103692760 - MER7C DNA MER2_type -2882 146 1 6291 123 15 32 chr4 98636148 98637257 -103691090 - L1MA3 LINE L1 0 6305 5217 2876 305 136 44 chr4 98637279 98638605 -103689742 + L2 LINE L2 720 1922 -1391 1366 108 59 22 chr4 98638605 98638827 -103689520 + MER30 DNA MER1_type 1 230 0 2876 305 136 44 chr4 98638827 98639814 -103688533 + L2 LINE L2 1922 3252 -61 244 146 24 0 chr4 98640157 98640198 -103688149 + L1MB5 LINE L1 6079 6120 -54 23 33 0 0 chr4 98640489 98640519 -103687828 + AT_rich Low_complexity Low_complexity 1 30 0 1825 151 7 21 chr4 98640548 98640840 -103687507 + AluJo SINE Alu 1 309 0 190 0 0 0 chr4 98640840 98640861 -103687486 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 745 237 50 7 chr4 98640861 98641190 -103687157 + MSTD LTR MaLR 16 396 0 2150 127 0 7 chr4 98641457 98641756 -103686591 + AluSx SINE Alu 1 297 -15 388 264 31 8 chr4 98642581 98642710 -103685637 + L1M4 LINE L1 3588 3719 -2427 282 203 89 101 chr4 98642710 98642796 -103685551 + L1M4 LINE L1 3154 3239 -2907 1586 178 20 24 chr4 98642796 98643088 -103685259 + AluJo SINE Alu 3 293 -19 282 203 89 101 chr4 98643088 98643159 -103685188 + L1M4 LINE L1 3239 3309 -2837 2651 103 28 0 chr4 98643159 98643555 -103684792 + L1PA10 LINE L1 5750 6156 -12 1141 153 0 0 chr4 98643563 98643739 -103684608 + AluJb SINE Alu 129 304 -8 7517 172 12 27 chr4 98643741 98646640 -103681707 + L1PA3 LINE L1 3301 6155 0 2543 197 25 5 chr4 98646640 98647523 -103680824 + L1M4 LINE L1 4747 5644 -534 523 159 0 19 chr4 98647523 98647627 -103680720 + L1PA15 LINE L1 6060 6164 -1 189 74 0 0 chr4 98647674 98647701 -103680646 + (TC)n Simple_repeat Simple_repeat 2 28 0 7709 22 0 0 chr4 98647999 98649456 -103678891 - L1PA3 LINE L1 -2 6153 4698 6388 30 10 5 chr4 98649458 98650238 -103678109 + L1PA3 LINE L1 3920 4703 -1443 278 314 49 41 chr4 98650609 98650767 -103677580 - MIR SINE MIR -58 150 16 29 0 0 0 chr4 98650906 98650935 -103677412 + AT_rich Low_complexity Low_complexity 1 29 0 253 0 54 0 chr4 98651063 98651100 -103677247 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 676 148 0 57 chr4 98651112 98651234 -103677113 + FLAM_A SINE Alu 6 120 -22 303 333 8 26 chr4 98651250 98651367 -103676980 - L1MC4 LINE L1 -1339 6703 6589 1575 164 10 69 chr4 98651430 98651735 -103676612 + AluSx SINE Alu 9 295 -17 2090 121 3 3 chr4 98653242 98653539 -103674808 + AluSg SINE Alu 1 297 -13 702 275 18 37 chr4 98653558 98653776 -103674571 + MIR SINE MIR 11 224 -38 23 0 0 0 chr4 98653895 98653918 -103674429 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 98654891 98654913 -103673434 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr4 98655561 98655587 -103672760 + AT_rich Low_complexity Low_complexity 1 26 0 215 179 18 18 chr4 98655800 98655856 -103672491 + T-rich Low_complexity Low_complexity 2 57 0 203 184 0 0 chr4 98657438 98657476 -103670871 + A-rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr4 98658624 98658649 -103669698 + AT_rich Low_complexity Low_complexity 1 25 0 430 260 0 143 chr4 98658769 98658965 -103669382 - MER5B DNA MER1_type -10 168 1 2164 109 76 25 chr4 98658975 98659332 -103669015 - THE1C LTR MaLR 0 375 1 326 362 95 23 chr4 98659655 98659876 -103668471 - MIR SINE MIR -6 256 20 14508 135 27 8 chr4 98660001 98662372 -103665975 - Tigger1 DNA MER2_type -1 2417 1 270 0 0 0 chr4 98662773 98662803 -103665544 + (TG)n Simple_repeat Simple_repeat 2 31 0 315 371 60 0 chr4 98663102 98663218 -103665129 - L2 LINE L2 -16 3256 3134 242 272 97 3 chr4 98663540 98663643 -103664704 + MIR SINE MIR 44 153 -77 2023 100 52 0 chr4 98663836 98664127 -103664220 + AluSx SINE Alu 1 305 0 191 103 26 0 chr4 98664246 98664285 -103664062 + T-rich Low_complexity Low_complexity 1 40 0 15647 115 31 24 chr4 98664339 98665719 -103662628 + L1P LINE L1 11 1380 -4766 2333 91 3 0 chr4 98665719 98666015 -103662332 + AluY SINE Alu 1 297 -14 15647 115 31 24 chr4 98666015 98667132 -103661215 + L1P LINE L1 1380 2529 -3617 6495 51 2 0 chr4 98667132 98667934 -103660413 + L1PA6 LINE L1 5339 6143 -11 15647 115 31 24 chr4 98667934 98667952 -103660395 + L1P LINE L1 2529 2545 -3601 877 343 48 36 chr4 98667957 98668459 -103659888 - L2 LINE L2 -609 2705 2198 237 185 0 0 chr4 98668463 98668528 -103659819 + (TA)n Simple_repeat Simple_repeat 2 66 0 255 122 0 0 chr4 98668577 98668626 -103659721 + (TA)n Simple_repeat Simple_repeat 1 49 0 337 323 67 54 chr4 98669145 98669368 -103658979 - L3 LINE CR1 -95 1482 1257 330 26 0 0 chr4 98669368 98669407 -103658940 + (TG)n Simple_repeat Simple_repeat 2 40 0 2029 266 102 10 chr4 98669691 98670397 -103657950 + L1MEc LINE L1 380 1150 -5571 5798 191 9 23 chr4 98670397 98671670 -103656677 + L1MB2 LINE L1 4104 5336 -835 1905 154 0 16 chr4 98671670 98671976 -103656371 + AluSx SINE Alu 4 304 -8 5798 191 9 23 chr4 98671976 98672801 -103655546 + L1MB2 LINE L1 5336 6171 0 673 230 54 21 chr4 98672796 98673035 -103655312 + L1MEc LINE L1 1135 1381 -5340 * 438 269 83 59 chr4 98673042 98673221 -103655126 + L1MEc LINE L1 1657 1830 -4752 1986 67 7 60 chr4 98673221 98673503 -103654844 - AluY SINE Alu -16 295 29 438 269 83 59 chr4 98673503 98673546 -103654801 + L1MEc LINE L1 1830 1870 -4712 180 0 0 0 chr4 98673546 98673566 -103654781 + (CATAT)n Simple_repeat Simple_repeat 2 21 0 438 269 83 59 chr4 98673566 98673652 -103654695 + L1MEc LINE L1 1870 2021 -4561 228 318 101 50 chr4 98674143 98674322 -103654025 - L3 LINE CR1 -778 799 612 2086 96 0 4 chr4 98674630 98674901 -103653446 + AluSx SINE Alu 42 311 -1 26 74 0 0 chr4 98675750 98675804 -103652543 + AT_rich Low_complexity Low_complexity 1 54 0 2148 121 16 0 chr4 98675886 98676191 -103652156 - AluSq SINE Alu -3 310 1 4158 21 0 0 chr4 98676479 98676957 -103651390 - L1PA3 LINE L1 -1 6154 5677 282 204 32 0 chr4 98677439 98677532 -103650815 + CT-rich Low_complexity Low_complexity 2 97 0 221 220 0 34 chr4 98678105 98678164 -103650183 + L2 LINE L2 2714 2770 -544 23 33 0 0 chr4 98678933 98678963 -103649384 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 98679015 98679043 -103649304 + AT_rich Low_complexity Low_complexity 1 28 0 574 308 32 27 chr4 98679526 98679747 -103648600 + MIR SINE MIR 9 230 -32 318 318 220 23 chr4 98680233 98680447 -103647900 - MIR SINE MIR 0 262 7 462 267 0 0 chr4 98681466 98681567 -103646780 - L2 LINE L2 -4 3309 3209 466 326 30 49 chr4 98683833 98684097 -103644250 - MIR SINE MIR 0 262 4 21 36 0 0 chr4 98684890 98684918 -103643429 + AT_rich Low_complexity Low_complexity 1 28 0 348 344 91 36 chr4 98684944 98685252 -103643095 + L1MEd LINE L1 103 427 -5692 539 267 71 63 chr4 98685532 98686350 -103641997 + L1MEd LINE L1 697 1597 -893 313 292 59 27 chr4 98686350 98686658 -103641689 + L1MC4 LINE L1 7347 7672 -296 1833 142 10 19 chr4 98686741 98687050 -103641297 - AluSx SINE Alu -6 306 1 27 49 0 0 chr4 98687737 98687778 -103640569 + AT_rich Low_complexity Low_complexity 1 41 0 605 199 78 179 chr4 98688063 98688410 -103639937 + L1MD2 LINE L1 5929 6355 -2 4382 146 99 68 chr4 98688725 98689776 -103638571 + Tigger6a DNA MER2_type 1 1083 0 27 92 0 0 chr4 98690736 98690812 -103637535 + AT_rich Low_complexity Low_complexity 1 76 0 207 139 0 0 chr4 98691622 98691658 -103636689 + (A)n Simple_repeat Simple_repeat 1 36 0 1994 126 55 0 chr4 98691799 98692092 -103636255 + AluSx SINE Alu 1 309 -3 23 33 0 0 chr4 98692092 98692122 -103636225 + AT_rich Low_complexity Low_complexity 1 30 0 41 48 0 0 chr4 98692493 98692555 -103635792 + AT_rich Low_complexity Low_complexity 1 62 0 242 178 14 0 chr4 98692734 98692763 -103635584 + (TA)n Simple_repeat Simple_repeat 2 29 -46 746 171 95 113 chr4 98692763 98692985 -103635362 - MER20 DNA MER1_type -1 218 1 242 178 14 0 chr4 98692985 98693028 -103635319 + (TA)n Simple_repeat Simple_repeat 29 75 0 456 286 28 52 chr4 98693131 98693344 -103635003 + L1ME4a LINE L1 5659 5866 -255 23 54 0 0 chr4 98693517 98693554 -103634793 + AT_rich Low_complexity Low_complexity 1 37 0 529 286 42 64 chr4 98694432 98694837 -103633510 - L1MC4a LINE L1 -1911 5897 5502 22 35 0 0 chr4 98696180 98696209 -103632138 + AT_rich Low_complexity Low_complexity 1 29 0 1241 55 12 6 chr4 98696483 98696648 -103631699 + AluY SINE Alu 146 311 0 688 248 81 62 chr4 98697216 98697523 -103630824 - MLT1J LTR MaLR -170 341 29 1328 229 77 91 chr4 98697564 98698478 -103629869 - L1MDa LINE L1 -4123 2598 1650 757 188 6 12 chr4 98698480 98698645 -103629702 - AluY SINE Alu 0 311 148 2447 54 6 25 chr4 98698756 98699073 -103629274 - AluY SINE Alu 0 311 1 317 272 76 27 chr4 98699091 98699315 -103629032 - L1MDa LINE L1 -5023 1698 1464 5472 159 13 19 chr4 98699325 98701143 -103627204 - L1MA6 LINE L1 0 6300 4492 9882 111 36 5 chr4 98701178 98702696 -103625651 - THE1B-int LTR MaLR 0 1580 16 2481 127 3 3 chr4 98702718 98703081 -103625266 - THE1B LTR MaLR 0 364 2 1322 159 57 0 chr4 98703082 98703346 -103625001 + L1PB3 LINE L1 3895 4173 -1973 1841 120 87 75 chr4 98703346 98703512 -103624835 - THE1B LTR MaLR 0 364 201 1583 138 0 0 chr4 98703512 98703730 -103624617 + AluSg/x SINE Alu 83 300 -10 1841 120 87 75 chr4 98703730 98703921 -103624426 - THE1B LTR MaLR -163 201 3 8365 104 4 0 chr4 98703923 98705116 -103623231 - THE1B-int LTR MaLR 0 1580 383 207 108 27 0 chr4 98705118 98705155 -103623192 + T-rich Low_complexity Low_complexity 2 39 0 2878 72 0 17 chr4 98705161 98705578 -103622769 - LTR7 LTR ERV1 -40 410 1 2357 80 48 13 chr4 98705578 98705955 -103622392 - HERVH LTR ERV1 0 7713 7324 1329 111 23 9 chr4 98705955 98706172 -103622175 - HERVH LTR ERV1 -1894 5819 5600 4010 147 3 1 chr4 98706173 98706834 -103621513 - HERVH LTR ERV1 -2564 5149 4488 3218 115 0 6 chr4 98706836 98707341 -103621006 - HERVH LTR ERV1 -3720 3993 3492 900 133 7 0 chr4 98707331 98707481 -103620866 - HERVH LTR ERV1 -4423 3290 3140 * 18101 87 65 9 chr4 98707460 98710299 -103618048 - HERVH LTR ERV1 -4718 2995 1 684 86 0 19 chr4 98710301 98710406 -103617941 - LTR7 LTR ERV1 -2 448 346 2675 87 3 0 chr4 98710406 98710797 -103617550 - THE1B-int LTR MaLR -1188 392 1 2066 118 88 18 chr4 98710797 98711137 -103617210 - THE1B LTR MaLR 0 364 1 5347 160 19 8 chr4 98711137 98712740 -103615607 + L1PB3 LINE L1 4169 5791 -363 1994 128 50 37 chr4 98712800 98713176 -103615171 + L1PB3 LINE L1 5767 6147 -7 7778 197 58 64 chr4 98713195 98714574 -103613773 - L1MEc LINE L1 -1812 5753 4367 6560 164 17 8 chr4 98714574 98716614 -103611733 - L1PA13 LINE L1 -4 6159 4102 7778 197 58 64 chr4 98716614 98716843 -103611504 - L1MEc LINE L1 -3198 4367 4138 726 122 19 0 chr4 98716843 98716950 -103611397 - AluSg/x SINE Alu -17 293 185 7778 197 58 64 chr4 98716950 98717143 -103611204 - L1MEc LINE L1 -3427 4138 3945 1808 179 6 13 chr4 98717143 98717456 -103610891 - AluJb SINE Alu 0 312 2 7778 197 58 64 chr4 98717456 98718310 -103610037 - L1MEc LINE L1 -3620 3945 2999 2399 261 112 16 chr4 98718377 98719319 -103609028 - L1MEc LINE L1 -5321 2425 1394 42032 36 4 2 chr4 98719419 98725562 -103602785 + L1PA3 LINE L1 1 6152 -3 1033 220 51 104 chr4 98726976 98727283 -103601064 - MLT1C LTR MaLR -2 465 191 1967 136 3 11 chr4 98727283 98727602 -103600745 - AluSx SINE Alu 0 317 1 1033 220 51 104 chr4 98727602 98727784 -103600563 - MLT1C LTR MaLR -276 191 1 216 0 0 0 chr4 98728969 98728993 -103599354 + (TTG)n Simple_repeat Simple_repeat 2 25 0 315 358 49 8 chr4 98729245 98729488 -103598859 + L1ME LINE L1 5484 5736 -385 1559 216 43 43 chr4 98729493 98729960 -103598387 + MLT1C LTR MaLR 1 467 0 237 277 12 12 chr4 98730103 98730186 -103598161 + (TA)n Simple_repeat Simple_repeat 1 83 0 264 149 0 0 chr4 98730194 98730241 -103598106 + (CA)n Simple_repeat Simple_repeat 2 48 0 1918 142 3 35 chr4 98730345 98730656 -103597691 + AluSx SINE Alu 1 301 -11 1753 236 55 2 chr4 98730745 98731198 -103597149 + L1MC3 LINE L1 6291 6767 -1018 1147 214 4 11 chr4 98731192 98731468 -103596879 - L1M4 LINE L1 -1231 4915 4642 * 234 182 0 0 chr4 98731468 98731523 -103596824 + L1MC3 LINE L1 7730 7784 -1 38 39 0 0 chr4 98731523 98731575 -103596772 + AT_rich Low_complexity Low_complexity 1 52 0 604 295 58 15 chr4 98731594 98731981 -103596366 - L1MC4a LINE L1 -303 5818 5420 2504 84 0 3 chr4 98732576 98732885 -103595462 + AluSx SINE Alu 1 308 -4 26 82 0 0 chr4 98732887 98732948 -103595399 + AT_rich Low_complexity Low_complexity 1 61 0 512 241 21 55 chr4 98733055 98733291 -103595056 + L1MC4 LINE L1 7447 7674 -368 585 188 23 17 chr4 98733291 98733467 -103594880 + GA-rich Low_complexity Low_complexity 4 180 0 519 286 20 5 chr4 98733474 98733673 -103594674 + L1MC4 LINE L1 7692 7893 -149 211 132 26 0 chr4 98735500 98735538 -103592809 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 22 80 0 0 chr4 98736579 98736629 -103591718 + AT_rich Low_complexity Low_complexity 1 50 0 198 0 0 0 chr4 98738309 98738331 -103590016 + (T)n Simple_repeat Simple_repeat 1 22 0 374 294 72 83 chr4 98738887 98739152 -103589195 - MIR SINE MIR 0 262 1 261 274 39 49 chr4 98739288 98739390 -103588957 + MIR3 SINE MIR 73 173 -35 314 279 84 32 chr4 98739390 98739544 -103588803 - MLT1H LTR MaLR 0 549 388 424 263 92 23 chr4 98739694 98739925 -103588422 - MLT1H LTR MaLR -263 286 40 1427 218 11 46 chr4 98740108 98740480 -103587867 - MLT1A1 LTR MaLR -6 359 1 436 271 59 62 chr4 98741078 98741202 -103587145 - Charlie8 DNA MER1_type -68 273 150 2276 98 7 0 chr4 98741202 98741507 -103586840 + AluSp SINE Alu 1 307 -6 436 271 59 62 chr4 98741507 98741655 -103586692 - Charlie8 DNA MER1_type -191 150 2 1044 243 39 3 chr4 98741758 98742042 -103586305 - MLT1E3 LTR MaLR 0 624 331 1124 178 0 27 chr4 98742043 98742268 -103586079 - AluSg SINE Alu -47 263 45 1829 113 4 8 chr4 98742368 98742615 -103585732 + AluSc SINE Alu 4 249 -60 227 299 0 0 chr4 98743043 98743110 -103585237 - L1M4 LINE L1 -1318 4828 4762 30 0 0 0 chr4 98744109 98744139 -103584208 + AT_rich Low_complexity Low_complexity 1 30 0 1390 70 0 0 chr4 98744294 98744465 -103583882 - AluSg SINE Alu -11 298 128 650 27 0 0 chr4 98744468 98744542 -103583805 - AluSg SINE Alu -243 75 2 22 0 0 0 chr4 98746246 98746268 -103582079 + AT_rich Low_complexity Low_complexity 1 22 0 2390 99 0 0 chr4 98748403 98748705 -103579642 + AluSx SINE Alu 1 302 -10 240 264 115 40 chr4 98748998 98749172 -103579175 + L1ME LINE L1 5594 5780 -341 2229 118 0 6 chr4 98749504 98749817 -103578530 + AluSx SINE Alu 1 311 -1 217 274 32 0 chr4 98749940 98750002 -103578345 + GA-rich Low_complexity Low_complexity 2 65 0 655 153 138 18 chr4 98750149 98750265 -103578082 + MER39 LTR ERV1 2 103 -604 198 0 0 0 chr4 98750265 98750287 -103578060 + (GAAAA)n Simple_repeat Simple_repeat 3 24 0 655 153 138 18 chr4 98750287 98750357 -103577990 + MER39 LTR ERV1 103 374 -333 361 114 136 125 chr4 98750354 98750442 -103577905 - AluJb SINE Alu -7 295 207 * 2219 138 3 11 chr4 98750438 98750786 -103577561 + MER39 LTR ERV1 363 707 0 2908 180 23 36 chr4 98750869 98751425 -103576922 - MER44D DNA MER2_type -1 604 1 783 253 44 40 chr4 98751446 98751695 -103576652 - MIR SINE MIR 0 262 13 1682 139 20 0 chr4 98751756 98752008 -103576339 + MER7C DNA MER2_type 1 257 -345 2108 127 51 85 chr4 98752008 98752189 -103576158 + MSTA LTR MaLR 1 187 -241 1639 179 7 16 chr4 98752189 98752496 -103575851 + AluJo SINE Alu 6 309 -3 2108 127 51 85 chr4 98752496 98752724 -103575623 + MSTA LTR MaLR 187 396 -32 1034 155 0 6 chr4 98752827 98752988 -103575359 - AluSx SINE Alu -32 280 121 2384 54 0 4 chr4 98753013 98753293 -103575054 - AluY SINE Alu -32 279 1 1051 98 0 0 chr4 98753296 98753429 -103574918 - AluSx SINE Alu -180 133 1 290 122 0 0 chr4 98753429 98753470 -103574877 + MSTA LTR MaLR 386 426 0 * 2168 138 43 11 chr4 98753470 98753809 -103574538 + MER7C DNA MER2_type 253 602 0 575 194 134 22 chr4 98754776 98754910 -103573437 + MER5A DNA MER1_type 4 152 -37 3183 259 99 90 chr4 98754976 98755081 -103573266 + L1M4 LINE L1 2164 2267 -3879 2005 142 0 43 chr4 98755081 98755405 -103572942 + AluSx SINE Alu 1 310 -2 3183 259 99 90 chr4 98755405 98755874 -103572473 + L1M4 LINE L1 2267 2730 -3416 1015 202 0 17 chr4 98755874 98756052 -103572295 + FAM SINE Alu 1 175 0 3183 259 99 90 chr4 98756052 98756245 -103572102 + L1M4 LINE L1 2730 2920 -3226 1726 174 30 7 chr4 98756245 98756550 -103571797 + AluJb SINE Alu 1 312 0 3183 259 99 90 chr4 98756550 98757108 -103571239 + L1M4 LINE L1 2920 3471 -2675 2066 157 0 0 chr4 98757108 98757420 -103570927 + AluSx SINE Alu 1 312 0 3183 259 99 90 chr4 98757420 98758162 -103570185 + L1M4 LINE L1 3471 4205 -1941 219 114 0 0 chr4 98758162 98758197 -103570150 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3183 259 99 90 chr4 98758197 98758380 -103569967 + L1M4 LINE L1 4205 4385 -1761 1962 107 29 61 chr4 98758380 98758690 -103569657 + AluSg SINE Alu 1 300 -10 3183 259 99 90 chr4 98758690 98759322 -103569025 + L1M4 LINE L1 4385 5078 -1068 855 351 75 24 chr4 98759420 98760135 -103568212 + L1PBb LINE L1 21 772 -6437 414 312 68 47 chr4 98760123 98760402 -103567945 + L1PBb LINE L1 1056 1340 -5869 * 1199 261 3 39 chr4 98760562 98761043 -103567304 + L1PBb LINE L1 1366 1922 -5286 * 4435 246 42 59 chr4 98761029 98761711 -103566636 + L1PBb LINE L1 1695 2387 -4821 1605 150 88 0 chr4 98761711 98761984 -103566363 + AluSg SINE Alu 1 297 -13 4435 246 42 59 chr4 98761984 98764190 -103564157 + L1PBb LINE L1 2387 4626 -2582 30548 96 5 17 chr4 98764190 98768531 -103559816 - L1P LINE L1 -1847 4299 11 399 248 28 28 chr4 98768548 98768689 -103559658 + L1M4 LINE L1 5237 5377 -769 2042 213 42 87 chr4 98768689 98769263 -103559084 + MLT2B3 LTR ERVL 3 550 -4 785 142 0 8 chr4 98769267 98769394 -103558953 + HERVL-B3 LTR ERVL 1 126 -5528 6801 101 6 31 chr4 98769396 98771115 -103557232 - L1PA8 LINE L1 -1 6171 4508 6540 88 1 1 chr4 98771111 98771989 -103556358 + L1PA8 LINE L1 3634 4511 -1635 * 15811 135 15 19 chr4 98771989 98773019 -103555328 + HERVL-B3 LTR ERVL 114 1147 -4507 1902 149 3 13 chr4 98773019 98773321 -103555026 - AluSx SINE Alu -13 299 1 15811 135 15 19 chr4 98773321 98774747 -103553600 + HERVL-B3 LTR ERVL 1147 2558 -3096 2432 69 0 16 chr4 98774747 98775050 -103553297 + AluY SINE Alu 1 298 -13 12947 121 33 2 chr4 98775056 98776899 -103551448 + HERVL-B3 LTR ERVL 2825 4724 -1040 1276 233 49 32 chr4 98776904 98777139 -103551208 - MLT2B3 LTR ERVL -46 508 278 5598 66 32 40 chr4 98777139 98778390 -103549957 + SVA Other Other 11 1040 -346 1276 233 49 32 chr4 98778390 98778696 -103549651 - MLT2B3 LTR ERVL -276 278 1 4689 131 13 8 chr4 98778696 98779400 -103548947 + HERVL-B3 LTR ERVL 4711 5417 -237 184 328 17 17 chr4 98779449 98779507 -103548840 - MIR SINE MIR -184 78 21 393 351 97 21 chr4 98780644 98780869 -103547478 - L2 LINE L2 -194 3078 2813 2084 123 0 22 chr4 98780869 98781185 -103547162 + AluSx SINE Alu 1 309 -3 393 351 97 21 chr4 98781185 98781341 -103547006 - L2 LINE L2 -459 2813 2670 5613 67 0 0 chr4 98781388 98782058 -103546289 - L1PA8 LINE L1 0 6172 5503 553 125 0 57 chr4 98782061 98782149 -103546198 + FLAM_A SINE Alu 48 130 -12 1611 70 20 0 chr4 98783052 98783252 -103545095 + AluSx SINE Alu 1 204 -108 1673 187 0 0 chr4 98783352 98783630 -103544717 - AluJb SINE Alu -34 278 1 348 293 111 5 chr4 98783632 98783830 -103544517 + L1MC/D LINE L1 5554 5772 -2036 3872 109 12 25 chr4 98783867 98784428 -103543919 + MER41A LTR ERV1 1 554 0 298 238 0 0 chr4 98784698 98784761 -103543586 - MIR SINE MIR -187 75 13 2283 74 10 3 chr4 98785791 98786088 -103542259 - AluY SINE Alu -12 299 1 3981 33 0 2 chr4 98786634 98787083 -103541264 - LTR7 LTR ERV1 -2 448 1 2269 99 3 3 chr4 98787486 98787788 -103540559 - AluSq SINE Alu -11 302 1 387 327 56 25 chr4 98788069 98788231 -103540116 - MIR SINE MIR -75 187 21 21 0 0 0 chr4 98788444 98788465 -103539882 + AT_rich Low_complexity Low_complexity 1 21 0 2321 44 41 17 chr4 98788548 98788843 -103539504 + AluY SINE Alu 1 302 -9 186 402 0 0 chr4 98788989 98789071 -103539276 + MER5B DNA MER1_type 1 82 -96 226 186 0 23 chr4 98789193 98789236 -103539111 + MIR SINE MIR 211 252 -10 790 130 10 6 chr4 98789328 98789452 -103538895 + MSTA LTR MaLR 1 128 -227 3665 143 175 43 chr4 98789452 98790805 -103537542 + pTR5 LTR ERV1 744 2606 0 1253 141 47 105 chr4 98790814 98791090 -103537257 + MSTA LTR MaLR 150 409 -19 1793 98 0 4 chr4 98791740 98791974 -103536373 + AluSq SINE Alu 68 300 -13 22 99 0 0 chr4 98792141 98792212 -103536135 + AT_rich Low_complexity Low_complexity 1 71 0 950 133 26 72 chr4 98792476 98792671 -103535676 + MSTB2 LTR MaLR 264 449 -8 1949 126 0 44 chr4 98792840 98793158 -103535189 + AluSc SINE Alu 1 304 -5 245 244 0 12 chr4 98793317 98793399 -103534948 + GA-rich Low_complexity Low_complexity 4 84 0 1407 211 34 74 chr4 98793426 98793806 -103534541 + MLT1A1 LTR MaLR 1 365 0 311 369 36 0 chr4 98793854 98793965 -103534382 - L2 LINE L2 0 3272 3158 2259 97 3 10 chr4 98794286 98794584 -103533763 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr4 98794876 98794897 -103533450 + AT_rich Low_complexity Low_complexity 1 21 0 1830 149 7 4 chr4 98796432 98796708 -103531639 + AluSx SINE Alu 5 281 -31 227 239 60 0 chr4 98796749 98796816 -103531531 - MER92C LTR ERV1 0 554 484 1784 126 7 11 chr4 98796929 98797200 -103531147 - AluSx SINE Alu -8 304 35 444 214 27 36 chr4 98797230 98797342 -103531005 - MER92C LTR ERV1 -443 111 1 483 233 0 33 chr4 98797987 98798107 -103530240 - MER31-int LTR ERV1 -462 4474 4359 639 202 117 42 chr4 98798159 98798372 -103529975 - LTR37A LTR ERV1 -197 229 1 2004 134 7 20 chr4 98798412 98798711 -103529636 - AluSx SINE Alu -17 295 1 879 178 0 0 chr4 98798720 98798855 -103529492 - FLAM_A SINE Alu 0 142 8 1568 186 29 0 chr4 98798880 98799159 -103529188 - AluJb SINE Alu 0 312 26 2796 222 15 70 chr4 98799161 98800092 -103528255 - MER31-int LTR ERV1 -727 4209 3330 473 195 8 41 chr4 98800168 98800291 -103528056 - MER31-int LTR ERV1 -1648 3288 3170 266 209 0 105 chr4 98800778 98800864 -103527483 - MER31-int LTR ERV1 -1870 3066 2990 235 238 69 89 chr4 98800941 98801042 -103527305 - L2 LINE L2 -35 3237 3139 1990 131 44 0 chr4 98801341 98801638 -103526709 + AluSx SINE Alu 1 310 -2 2319 112 0 0 chr4 98802318 98802622 -103525725 - AluSx SINE Alu -8 304 1 2025 151 54 24 chr4 98802763 98803188 -103525159 + L1MB7 LINE L1 5747 6184 0 3128 37 0 0 chr4 98803639 98804038 -103524309 + L1PA4 LINE L1 5764 6162 0 375 354 146 24 chr4 98804162 98804538 -103523809 - L2 LINE L2 0 3272 2851 231 333 54 0 chr4 98804943 98805072 -103523275 + L1ME1 LINE L1 5766 5901 -1907 190 71 24 48 chr4 98805104 98805146 -103523201 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 361 148 25 0 chr4 98805212 98805293 -103523054 + (TA)n Simple_repeat Simple_repeat 2 84 0 747 214 0 19 chr4 98805294 98805448 -103522899 - AluSg/x SINE Alu -27 283 133 2158 115 0 3 chr4 98805448 98805752 -103522595 - AluSx SINE Alu -3 309 7 397 264 62 6 chr4 98805907 98806080 -103522267 - LTR16A LTR ERVL 0 450 166 500 33 0 0 chr4 98806249 98806310 -103522037 - AluY SINE Alu -15 294 234 826 247 9 27 chr4 98806462 98806685 -103521662 + MLT1F LTR MaLR 1 219 -323 766 243 68 15 chr4 98806735 98806941 -103521406 + MLT1F LTR MaLR 351 567 0 25 51 0 0 chr4 98807225 98807264 -103521083 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr4 98808176 98808201 -103520146 + AT_rich Low_complexity Low_complexity 1 25 0 1607 105 14 0 chr4 98808229 98808439 -103519908 - AluSq SINE Alu -100 213 1 226 314 154 45 chr4 98809198 98809510 -103518837 - L2 LINE L2 -99 3173 2828 21 0 0 0 chr4 98809623 98809644 -103518703 + AT_rich Low_complexity Low_complexity 1 21 0 341 319 72 75 chr4 98809863 98810170 -103518177 + L2 LINE L2 2937 3242 -30 622 221 100 0 chr4 98810181 98810321 -103518026 + FAM SINE Alu 4 157 -18 499 215 8 126 chr4 98810328 98810574 -103517773 + L1ME1 LINE L1 5945 6161 -5 1883 172 0 3 chr4 98811035 98811337 -103517010 + AluSx SINE Alu 3 303 -9 346 282 0 7 chr4 98811635 98811777 -103516570 - L1MC4 LINE L1 -225 7817 7677 244 305 38 67 chr4 98811942 98812047 -103516300 + MIR SINE MIR 49 150 -58 215 204 74 0 chr4 98812361 98812415 -103515932 - MIR SINE MIR -111 151 94 2024 113 0 28 chr4 98812507 98812789 -103515558 + AluSx SINE Alu 1 274 -38 381 283 74 77 chr4 98812922 98813219 -103515128 + L2 LINE L2 2338 2633 -681 344 271 60 60 chr4 98813269 98813402 -103514945 - L1MC4 LINE L1 -30 8012 7880 1937 142 3 14 chr4 98813444 98813739 -103514608 - AluSx SINE Alu -20 292 1 759 284 60 80 chr4 98813741 98814140 -103514207 - L1MC4 LINE L1 -149 7893 7487 1832 167 0 7 chr4 98814140 98814439 -103513908 - AluJo SINE Alu -15 297 1 759 284 60 80 chr4 98814439 98814571 -103513776 - L1MC4 LINE L1 -555 7487 7354 2169 155 8 32 chr4 98814571 98814792 -103513555 - MLT1B LTR MaLR 0 390 182 2207 124 0 0 chr4 98814792 98815083 -103513264 - AluSx SINE Alu -21 291 1 2169 155 8 32 chr4 98815083 98815261 -103513086 - MLT1B LTR MaLR -208 182 1 759 284 60 80 chr4 98815261 98815552 -103512795 - L1MC4 LINE L1 -688 7354 7087 234 0 0 0 chr4 98815664 98815690 -103512657 + (TTG)n Simple_repeat Simple_repeat 2 27 0 183 80 0 0 chr4 98815714 98815739 -103512608 + (TCC)n Simple_repeat Simple_repeat 3 27 0 354 306 49 27 chr4 98816455 98816638 -103511709 + L2 LINE L2 3127 3313 0 1028 99 39 11 chr4 98816746 98816928 -103511419 - L1MA8 LINE L1 -4 6287 6101 488 241 198 11 chr4 98817017 98817204 -103511143 - MIR SINE MIR 0 262 41 1898 145 10 17 chr4 98817926 98818223 -103510124 + AluSx SINE Alu 5 299 -13 2278 92 0 10 chr4 98818411 98818704 -103509643 + AluSg SINE Alu 1 290 -20 21 0 0 0 chr4 98818781 98818802 -103509545 + AT_rich Low_complexity Low_complexity 1 21 0 1719 179 23 3 chr4 98819656 98819958 -103508389 + AluJo SINE Alu 5 312 0 526 197 86 8 chr4 98820448 98820565 -103507782 - MLT1H1 LTR MaLR 0 555 430 1457 262 29 59 chr4 98820569 98821359 -103506988 - L1MC5 LINE L1 -803 7158 6411 280 263 34 25 chr4 98821606 98821724 -103506623 - HAL1b LINE L1 -747 601 483 513 293 75 68 chr4 98821733 98822027 -103506320 - HAL1b LINE L1 -977 371 76 281 154 19 0 chr4 98822295 98822347 -103506000 - L2 LINE L2 0 3313 3261 260 246 82 27 chr4 98822354 98822464 -103505883 + MLT1H LTR MaLR 434 549 0 1096 133 24 0 chr4 98823061 98823226 -103505121 - AluSc SINE Alu -11 298 130 540 257 46 7 chr4 98823246 98823398 -103504949 + MLT1C LTR MaLR 310 467 0 768 353 68 0 chr4 98823487 98823782 -103504565 + MER115 DNA AcHobo 6 320 -373 671 170 33 0 chr4 98823824 98823977 -103504370 + MER53 DNA DNA 12 169 -20 390 141 169 42 chr4 98824189 98824331 -103504016 + MER115 DNA AcHobo 507 666 -27 1397 156 5 0 chr4 98824609 98824821 -103503526 + AluJb SINE Alu 84 296 -16 758 171 0 0 chr4 98824822 98824939 -103503408 - AluJo/FLAM SINE Alu -185 117 1 1467 134 5 0 chr4 98825309 98825518 -103502829 - AluJb SINE Alu -16 296 87 347 146 0 0 chr4 98825518 98825573 -103502774 - AluJb SINE Alu -245 55 1 2289 56 35 0 chr4 98825585 98825870 -103502477 - AluY SINE Alu -16 295 1 3878 96 38 47 chr4 98825916 98826405 -103501942 + L1MA3 LINE L1 5645 6128 -177 2142 103 0 7 chr4 98826405 98826697 -103501650 - AluSg SINE Alu -20 290 1 3878 96 38 47 chr4 98826697 98826874 -103501473 + L1MA3 LINE L1 6128 6305 0 32 0 0 0 chr4 98826874 98826906 -103501441 + AT_rich Low_complexity Low_complexity 1 32 0 183 231 77 0 chr4 98827040 98827092 -103501255 + MIR SINE MIR 165 220 -42 403 176 0 0 chr4 98827390 98827458 -103500889 - AluS SINE Alu -240 69 2 1118 78 67 6 chr4 98827458 98827637 -103500710 + L1MA3 LINE L1 6116 6305 0 32 0 0 0 chr4 98827637 98827669 -103500678 + AT_rich Low_complexity Low_complexity 1 32 0 183 231 77 0 chr4 98827803 98827855 -103500492 + MIR SINE MIR 165 220 -42 347 294 189 0 chr4 98829765 98829945 -103498402 - MIR SINE MIR -18 244 31 227 271 0 55 chr4 98830491 98830582 -103497765 + MIR3 SINE MIR 74 160 -48 2094 103 35 0 chr4 98831200 98831490 -103496857 + AluSx SINE Alu 7 306 -6 2293 113 3 0 chr4 98831530 98831840 -103496507 + AluSp SINE Alu 1 311 -2 981 286 75 59 chr4 98832192 98832647 -103495700 + L2 LINE L2 2833 3294 -19 1879 163 6 13 chr4 98832701 98833014 -103495333 - AluSx SINE Alu -1 311 1 2265 121 0 0 chr4 98833023 98833321 -103495026 - AluSx SINE Alu -9 303 6 206 330 34 11 chr4 98834237 98834325 -103494022 - L2 LINE L2 -841 2473 2384 247 324 89 65 chr4 98834372 98834743 -103493604 - L2 LINE L2 -1131 2183 1804 2212 91 13 19 chr4 98834798 98835106 -103493241 - AluY SINE Alu -5 306 1 216 284 30 30 chr4 98835489 98835556 -103492791 + MIR SINE MIR 65 131 -77 1897 170 0 7 chr4 98835877 98836166 -103492181 + AluJo SINE Alu 1 287 -25 308 282 201 6 chr4 98836271 98836445 -103491902 - L1MC/D LINE L1 -2287 5521 5314 1354 170 85 51 chr4 98836494 98836847 -103491500 - MLT1A1 LTR MaLR 0 365 1 3648 156 57 10 chr4 98836993 98837709 -103490638 - L1MB2 LINE L1 -7 6164 5415 374 288 23 105 chr4 98837990 98838247 -103490100 - L1MC/D LINE L1 -3235 2911 2676 426 232 67 71 chr4 98838298 98838552 -103489795 - MER112 DNA MER1_type -3 253 1 1746 132 3 35 chr4 98838822 98839109 -103489238 - AluSx SINE Alu -10 302 25 2195 115 0 0 chr4 98839366 98839652 -103488695 - AluSx SINE Alu -26 286 1 2168 140 0 0 chr4 98840781 98841088 -103487259 - AluSx SINE Alu -5 307 1 4365 195 111 11 chr4 98841090 98842231 -103486116 + Charlie1a DNA MER1_type 1 1256 -199 337 280 73 90 chr4 98842271 98842793 -103485554 - MER34 LTR ERV1 -29 513 1 324 211 183 0 chr4 98842798 98842940 -103485407 + Charlie1a DNA MER1_type 1264 1431 -24 2214 111 0 3 chr4 98843221 98843527 -103484820 + AluSx SINE Alu 1 305 -7 2279 117 0 0 chr4 98843753 98844060 -103484287 + AluSg SINE Alu 1 307 -3 808 121 107 0 chr4 98844319 98844459 -103483888 - MER46B DNA MER2_type 0 236 82 806 170 65 0 chr4 98844459 98844612 -103483735 - MER46B DNA MER2_type -198 38 1 281 279 136 0 chr4 98844709 98844856 -103483491 + MIR SINE MIR 41 207 -55 1264 189 72 26 chr4 98845142 98845449 -103482898 - MLT1B LTR MaLR -2 388 68 617 149 75 37 chr4 98845451 98845585 -103482762 - MLT1B LTR MaLR -248 142 4 484 289 60 0 chr4 98845597 98845746 -103482601 - MIR SINE MIR -1 261 104 222 37 0 0 chr4 98846369 98846396 -103481951 + (T)n Simple_repeat Simple_repeat 1 27 0 2285 262 103 59 chr4 98846633 98846850 -103481497 - L2 LINE L2 -9 3304 3098 816 167 0 0 chr4 98846850 98846982 -103481365 - FLAM_C SINE Alu 0 133 2 2285 262 103 59 chr4 98846982 98848090 -103480257 - L2 LINE L2 -215 3098 1937 502 191 7 59 chr4 98848371 98848523 -103479824 - L1MC4 LINE L1 -211 7831 7688 276 242 42 32 chr4 98848660 98848755 -103479592 - MER5C DNA MER1_type -227 97 2 2557 232 161 80 chr4 98848781 98850472 -103477875 - L1MC4a LINE L1 -246 7562 5734 993 183 31 54 chr4 98850472 98850696 -103477651 - MER20 DNA MER1_type 0 219 1 417 355 58 35 chr4 98850709 98851055 -103477292 - L2 LINE L2 -1108 2206 1853 191 274 42 74 chr4 98851107 98851202 -103477145 + L2 LINE L2 3187 3278 -35 2077 142 0 3 chr4 98851831 98852141 -103476206 - AluSx SINE Alu -3 309 1 232 277 32 43 chr4 98852352 98852446 -103475901 - L2 LINE L2 -1866 1448 1356 222 264 23 58 chr4 98852504 98852591 -103475756 + L3 LINE CR1 1230 1313 -264 1560 156 3 98 chr4 98852649 98852976 -103475371 + AluJb SINE Alu 1 296 -16 193 292 174 42 chr4 98854021 98854165 -103474182 - MIR3 SINE MIR -21 187 25 334 239 47 0 chr4 98854431 98854535 -103473812 + MER20B DNA MER1_type 74 184 -35 234 307 10 0 chr4 98854693 98854772 -103473575 + MIR SINE MIR 55 135 -73 505 302 79 26 chr4 98854838 98855027 -103473320 - MER102b DNA MER1_type -18 323 125 852 203 164 49 chr4 98855056 98855342 -103473005 - L1MB8 LINE L1 -26 6152 5834 258 257 50 69 chr4 98855351 98855452 -103472895 - MER102b DNA MER1_type -232 109 11 180 0 0 0 chr4 98855622 98855642 -103472705 + (T)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr4 98856234 98856263 -103472084 + AT_rich Low_complexity Low_complexity 1 29 0 1491 161 16 99 chr4 98857811 98858134 -103470213 - AluJb SINE Alu -16 296 1 217 299 11 46 chr4 98858192 98858279 -103470068 - L3 LINE CR1 -264 1313 1230 194 263 42 63 chr4 98858337 98858432 -103469915 + L2 LINE L2 1356 1448 -1866 296 374 55 32 chr4 98858676 98859056 -103469291 + L2 LINE L2 1853 2241 -1073 923 210 35 15 chr4 98859062 98859262 -103469085 + MER20 DNA MER1_type 16 219 0 457 240 48 53 chr4 98859262 98859470 -103468877 + L1MC4a LINE L1 5734 5940 -1868 346 259 132 23 chr4 98859522 98859696 -103468651 + L1MC4a LINE L1 6059 6251 -1557 548 259 92 6 chr4 98860188 98860362 -103467985 + MIR SINE MIR 74 262 0 444 195 0 0 chr4 98860461 98860548 -103467799 + AluJ/FRAM SINE Alu 226 312 0 316 282 16 48 chr4 98860750 98860874 -103467473 - L2 LINE L2 0 3313 3194 11536 102 24 8 chr4 98861048 98862821 -103465526 - HERVH LTR ERV1 -5208 2505 520 254 271 185 26 chr4 98863418 98863569 -103464778 - MIR SINE MIR -59 203 29 368 330 94 24 chr4 98864147 98864359 -103463988 + MIR SINE MIR 28 254 -8 3452 106 27 14 chr4 98864515 98865073 -103463274 + HERVH LTR ERV1 2423 2987 -4726 912 135 20 0 chr4 98865067 98865215 -103463132 + HERVH LTR ERV1 3140 3290 -4423 * 3240 120 6 2 chr4 98865205 98865705 -103462642 + HERVH LTR ERV1 3492 3993 -3720 1829 166 6 6 chr4 98865696 98866010 -103462337 + HERVH LTR ERV1 4478 4791 -2922 * 1793 190 8 32 chr4 98867870 98868091 -103460256 - MLT1B LTR MaLR 0 390 182 1606 192 0 3 chr4 98868091 98868383 -103459964 - AluSx SINE Alu -21 291 1 1793 190 8 32 chr4 98868383 98868561 -103459786 - MLT1B LTR MaLR -208 182 1 587 262 79 28 chr4 98868600 98868852 -103459495 - L1MC4 LINE L1 -691 7351 7087 234 0 0 0 chr4 98868964 98868990 -103459357 + (TTG)n Simple_repeat Simple_repeat 2 27 0 183 80 0 0 chr4 98869014 98869039 -103459308 + (TCC)n Simple_repeat Simple_repeat 3 27 0 344 308 95 40 chr4 98870031 98870284 -103458063 - HAL1 LINE L1 -1807 700 434 345 242 100 132 chr4 98870367 98870648 -103457699 - HAL1 LINE L1 -2214 293 22 1621 113 0 8 chr4 98870828 98871066 -103457281 - AluY SINE Alu -34 277 42 311 237 95 84 chr4 98871593 98871783 -103456564 - L1ME4a LINE L1 0 6121 5930 223 301 135 37 chr4 98872308 98872471 -103455876 + MIR SINE MIR 30 208 -54 1415 203 53 37 chr4 98872519 98872899 -103455448 - MLT1B LTR MaLR -4 386 1 1270 200 108 98 chr4 98872960 98873372 -103454975 - L1ME3 LINE L1 -2 6160 5739 1713 177 10 3 chr4 98873372 98873682 -103454665 - AluJb SINE Alu 0 312 1 1270 200 108 98 chr4 98873682 98873823 -103454524 - L1ME3 LINE L1 -423 5739 5601 1677 138 14 0 chr4 98874002 98874278 -103454069 + HERVH LTR ERV1 3714 3993 -3720 * 4027 162 9 6 chr4 98874274 98874942 -103453405 + HERVH LTR ERV1 4480 5149 -2564 2490 97 47 29 chr4 98874939 98875532 -103452815 + HERVH LTR ERV1 5597 7713 0 * 1315 168 88 61 chr4 98875532 98875908 -103452439 + LTR7 LTR ERV1 1 386 -64 360 0 0 0 chr4 98875926 98875966 -103452381 + (CA)n Simple_repeat Simple_repeat 1 40 0 2118 171 46 9 chr4 98875966 98876399 -103451948 + L1MC/D LINE L1 5273 5721 -612 1889 91 16 0 chr4 98876540 98876794 -103451553 + AluSq SINE Alu 1 258 -55 293 214 116 27 chr4 98877014 98877126 -103451221 - L1MB8 LINE L1 -2 6176 6055 394 188 94 10 chr4 98877335 98877431 -103450916 + L1MC/D LINE L1 5676 5779 -2029 * 41633 59 1 4 chr4 98877429 98882770 -103445577 + L1P LINE L1 1 5325 -821 1881 295 94 37 chr4 98883340 98883559 -103444788 - ERVL LTR ERVL -2377 3277 3072 2235 112 0 3 chr4 98883559 98883864 -103444483 - AluSg SINE Alu -6 304 1 1881 295 94 37 chr4 98883864 98884754 -103443593 - ERVL LTR ERVL -2582 3072 2110 1541 184 14 0 chr4 98884967 98885250 -103443097 - L1MB5 LINE L1 -8 6166 5880 502 166 33 84 chr4 98885269 98885285 -103443062 - L1MB5 LINE L1 -273 5905 5890 1864 173 14 8 chr4 98885285 98885637 -103442710 - L1PA16 LINE L1 -1 6165 5812 502 166 33 84 chr4 98885637 98885780 -103442567 - L1MB5 LINE L1 -288 5890 5742 1264 229 106 43 chr4 98888718 98889229 -103439118 + HsTC2 DNA Tc2 1341 1883 -15 2294 102 0 3 chr4 98889293 98889597 -103438750 - AluSg SINE Alu -6 304 2 1261 222 140 41 chr4 98891033 98891570 -103436777 + HsTC2 DNA Tc2 1268 1857 -41 589 253 92 6 chr4 98894514 98894688 -103433659 + MIR SINE MIR 74 262 0 413 121 0 0 chr4 98894787 98894875 -103433472 + AluJ/FRAM SINE Alu 226 313 0 343 258 16 48 chr4 98895076 98895200 -103433147 - L2 LINE L2 0 3313 3194 1991 149 3 7 chr4 98895794 98896103 -103432244 - AluJb SINE Alu -4 308 1 481 268 52 20 chr4 98896607 98896760 -103431587 + MIR SINE MIR 99 256 -6 1084 149 86 18 chr4 98897585 98897807 -103430540 - MLT1C LTR MaLR -230 237 1 1625 299 92 69 chr4 98897807 98898256 -103430091 - ERVL LTR ERVL -1305 4459 4022 2017 122 6 34 chr4 98898256 98898576 -103429771 - AluSx SINE Alu -1 311 1 1625 299 92 69 chr4 98898576 98898853 -103429494 - ERVL LTR ERVL -1742 4022 3753 1581 174 7 44 chr4 98898853 98899147 -103429200 + AluJo SINE Alu 1 283 -29 1625 299 92 69 chr4 98899147 98899201 -103429146 - ERVL LTR ERVL -2011 3753 3702 1602 141 126 0 chr4 98899201 98899470 -103428877 - AluSx SINE Alu -9 303 1 1625 299 92 69 chr4 98899470 98899792 -103428555 - ERVL LTR ERVL -2062 3702 3329 21 0 0 0 chr4 98900984 98901005 -103427342 + AT_rich Low_complexity Low_complexity 1 21 0 2342 99 0 0 chr4 98902403 98902707 -103425640 - AluSg SINE Alu -6 304 1 22 35 0 0 chr4 98904643 98904672 -103423675 + AT_rich Low_complexity Low_complexity 1 29 0 211 174 0 43 chr4 98904837 98904883 -103423464 + CT-rich Low_complexity Low_complexity 2 45 0 21 36 0 0 chr4 98906367 98906395 -103421952 + AT_rich Low_complexity Low_complexity 1 28 0 2023 132 0 10 chr4 98906906 98907220 -103421127 - AluSq SINE Alu 0 313 3 1132 271 119 45 chr4 98908179 98908709 -103419638 - HAL1 LINE L1 -3 2504 1902 1916 135 7 0 chr4 98908709 98908990 -103419357 - AluSx SINE Alu -5 307 25 1132 271 119 45 chr4 98908990 98909208 -103419139 - HAL1 LINE L1 -605 1902 1701 211 281 234 8 chr4 98909230 98909358 -103418989 + MIR SINE MIR 34 190 -72 399 197 137 43 chr4 98909601 98909718 -103418629 + MLT1J LTR MaLR 78 205 -306 324 220 170 38 chr4 98909757 98909916 -103418431 + MLT1J LTR MaLR 320 499 -12 1010 205 137 92 chr4 98910287 98910900 -103417447 - L1MC5 LINE L1 -144 7817 7159 1771 134 37 8 chr4 98910900 98911192 -103417155 - AluSx SINE Alu 0 306 7 1010 205 137 92 chr4 98911192 98911352 -103416995 - L1MC5 LINE L1 -802 7159 7008 23 0 0 0 chr4 98911437 98911460 -103416887 + AT_rich Low_complexity Low_complexity 1 23 0 1727 166 14 3 chr4 98912176 98912472 -103415875 - AluJo SINE Alu -13 299 1 406 320 278 10 chr4 98912488 98913113 -103415234 + L2 LINE L2 1965 2757 -557 216 97 0 0 chr4 98913453 98913484 -103414863 + (A)n Simple_repeat Simple_repeat 1 31 0 231 301 186 6 chr4 98913593 98913749 -103414598 + MIR SINE MIR 73 256 -6 307 256 38 23 chr4 98916776 98916909 -103411438 + L1ME LINE L1 5688 5822 -299 22 70 0 0 chr4 98918007 98918050 -103410297 + AT_rich Low_complexity Low_complexity 1 43 0 531 321 116 19 chr4 98918321 98918632 -103409715 - L3 LINE CR1 -496 1081 741 23 0 0 0 chr4 98919300 98919323 -103409024 + AT_rich Low_complexity Low_complexity 1 23 0 645 200 77 94 chr4 98919691 98919926 -103408421 + MIR SINE MIR 12 242 -20 1203 206 107 96 chr4 98920604 98921016 -103407331 - L1ME3 LINE L1 -2 6160 5739 1484 210 10 3 chr4 98921016 98921326 -103407021 - AluJb SINE Alu 0 312 1 1203 206 107 96 chr4 98921326 98921467 -103406880 - L1ME3 LINE L1 -423 5739 5601 21 0 0 0 chr4 98922609 98922630 -103405717 + AT_rich Low_complexity Low_complexity 1 21 0 1931 121 38 0 chr4 98922630 98922919 -103405428 - AluSx SINE Alu -12 300 1 2391 79 0 3 chr4 98924094 98924399 -103403948 - AluY SINE Alu -7 304 1 1498 165 71 0 chr4 98925982 98926249 -103402098 - AluJb SINE Alu -20 292 7 772 230 112 0 chr4 98926335 98926531 -103401816 + MER58A DNA MER1_type 6 223 -1 2236 128 0 0 chr4 98926668 98926980 -103401367 - AluSq SINE Alu -1 312 1 545 186 72 64 chr4 98926995 98927231 -103401116 - L1MC5 LINE L1 -23 7938 7701 23 0 0 0 chr4 98927354 98927377 -103400970 + AT_rich Low_complexity Low_complexity 1 23 0 2262 74 0 3 chr4 98928556 98928840 -103399507 + AluY SINE Alu 1 283 -28 1906 79 0 24 chr4 98929052 98929304 -103399043 + AluY SINE Alu 1 246 -65 284 319 94 43 chr4 98930744 98930998 -103397349 - HAL1 LINE L1 -1807 700 434 344 259 113 101 chr4 98931115 98931362 -103396985 - HAL1 LINE L1 -2236 271 22 1779 89 4 4 chr4 98931542 98931779 -103396568 - AluY SINE Alu -34 277 41 24 32 0 0 chr4 98933441 98933472 -103394875 + AT_rich Low_complexity Low_complexity 1 31 0 23 68 0 0 chr4 98934801 98934845 -103393502 + AT_rich Low_complexity Low_complexity 1 44 0 186 43 0 0 chr4 98935203 98935226 -103393121 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2029 93 22 0 chr4 98936410 98936711 -103391636 - AluSx SINE Alu 0 307 1 2214 162 46 7 chr4 98936852 98937284 -103391063 - L1MC/D LINE L1 -612 5721 5273 360 0 0 0 chr4 98937284 98937324 -103391023 + (TG)n Simple_repeat Simple_repeat 1 40 0 1567 149 88 59 chr4 98937342 98937717 -103390630 - LTR7 LTR ERV1 -64 386 1 2136 67 52 6 chr4 98937717 98938046 -103390301 - HERVH LTR ERV1 0 7713 7370 11218 106 30 22 chr4 98938146 98940551 -103387796 - HERVH LTR ERV1 -5221 2492 1 742 76 0 19 chr4 98940553 98940658 -103387689 - LTR7 LTR ERV1 -2 448 346 539 164 10 0 chr4 98940659 98940763 -103387584 - L1MC/D LINE L1 -857 5289 5185 2539 184 79 21 chr4 98940763 98941332 -103387015 - Tigger6a DNA MER2_type -481 602 1 305 305 106 84 chr4 98942032 98942521 -103385826 - L1MC4 LINE L1 -284 7758 7259 700 290 222 13 chr4 98942670 98943066 -103385281 - L2 LINE L2 -4 3309 2831 468 222 131 20 chr4 98943357 98943555 -103384792 - L1MC5 LINE L1 -635 7326 7107 363 299 86 92 chr4 98943598 98944144 -103384203 - L1MC4a LINE L1 -1208 6600 6058 23 33 0 0 chr4 98944916 98944946 -103383401 + AT_rich Low_complexity Low_complexity 1 30 0 1301 157 30 4 chr4 98945327 98945557 -103382790 + MER46A DNA MER2_type 1 236 0 226 294 73 0 chr4 98946385 98946453 -103381894 - MIR SINE MIR -118 144 72 388 251 241 21 chr4 98947184 98947375 -103380972 - MIR SINE MIR -1 261 29 383 316 43 7 chr4 98947744 98947883 -103380464 + MIR SINE MIR 13 156 -106 484 297 93 21 chr4 98947928 98948164 -103380183 + MIR SINE MIR 4 256 -6 419 265 88 0 chr4 98948168 98948304 -103380043 - L2 LINE L2 -2 3311 3164 741 256 195 29 chr4 98948395 98948774 -103379573 + HAL1 LINE L1 1 442 -2065 1350 267 184 20 chr4 98948779 98949487 -103378860 + HAL1 LINE L1 1056 1879 -628 543 255 160 28 chr4 98949565 98950028 -103378319 + HAL1 LINE L1 1689 2212 -295 1523 161 84 0 chr4 98950065 98950364 -103377983 - MER46B DNA MER2_type 0 236 38 298 292 105 47 chr4 98950467 98950630 -103377717 + HAL1 LINE L1 2075 2227 -280 1667 163 68 0 chr4 98950630 98950968 -103377379 - MER46B DNA MER2_type 0 236 1 298 292 105 47 chr4 98950968 98951205 -103377142 + HAL1 LINE L1 2227 2498 -9 234 0 0 0 chr4 98951706 98951732 -103376615 + (T)n Simple_repeat Simple_repeat 1 26 0 2472 41 0 35 chr4 98951776 98952114 -103376233 - L1PA5 LINE L1 0 6154 5829 1920 142 6 6 chr4 99003176 99003514 -103324833 - L1PA5 LINE L1 -487 5669 5332 528 299 64 15 chr4 99003630 99003834 -103324513 - L2 LINE L2 -2 3311 3098 1432 154 0 4 chr4 99005146 99005380 -103322967 - L1P3 LINE L1 -6219 242 10 * 7479 246 103 37 chr4 99005378 99007756 -103320591 - L1M2 LINE L1 -4309 2540 5 360 301 86 53 chr4 99008003 99008212 -103320135 - L1ME4a LINE L1 -176 5945 5730 209 286 71 0 chr4 99008387 99008443 -103319904 - L2 LINE L2 -38 3275 3216 510 283 59 23 chr4 99008544 99008761 -103319586 - MIR SINE MIR -32 230 10 485 332 35 25 chr4 99008745 99008947 -103319400 + L3 LINE CR1 1079 1282 -295 * 1168 39 26 0 chr4 99009050 99009204 -103319143 + Tigger1 DNA MER2_type 1760 1917 -501 7168 106 16 3 chr4 99009249 99010355 -103317992 - Tigger1 DNA MER2_type -128 2290 1170 2530 91 136 5 chr4 99010355 99010751 -103317596 - LTR7 LTR ERV1 -2 448 1 2644 57 7 44 chr4 99010751 99011156 -103317191 - HERVH LTR ERV1 0 7713 7324 346 150 67 0 chr4 99011156 99011216 -103317131 - HERVH LTR ERV1 -1894 5819 5756 436 133 13 27 chr4 99011322 99011397 -103316950 + Charlie3 DNA MER1_type 2632 2705 -5 * 1627 184 54 30 chr4 99011396 99011765 -103316582 + MSTD LTR MaLR 19 396 0 510 300 63 47 chr4 99011964 99012154 -103316193 + MIR SINE MIR 70 262 0 509 358 51 24 chr4 99012208 99012504 -103315843 - L2 LINE L2 -1 3312 3009 24 0 0 0 chr4 99012702 99012726 -103315621 + AT_rich Low_complexity Low_complexity 1 24 0 334 320 96 8 chr4 99012836 99012961 -103315386 + MIR SINE MIR 16 151 -57 1874 124 1 0 chr4 99013565 99014020 -103314327 + L1P5 LINE L1 5078 5533 -618 566 146 0 27 chr4 99014087 99014197 -103314150 + L1 LINE L1 3287 3393 -2753 1962 143 0 7 chr4 99015073 99015380 -103312967 + AluSx SINE Alu 1 305 -7 2391 106 0 0 chr4 99015384 99015695 -103312652 + AluSx SINE Alu 1 311 -1 8096 112 2 9 chr4 99016326 99017609 -103310738 + HERVH LTR ERV1 1715 2987 -4726 810 136 27 0 chr4 99017603 99017750 -103310597 + HERVH LTR ERV1 3140 3290 -4423 * 3242 109 0 6 chr4 99017740 99018244 -103310103 + HERVH LTR ERV1 3492 3992 -3721 7848 106 1 1 chr4 99018298 99019453 -103308894 + HERVH LTR ERV1 3994 5137 -2576 17466 89 4 4 chr4 99019558 99022211 -103306136 + L1P3 LINE L1 1211 3864 -2597 783 175 0 0 chr4 99022503 99022629 -103305718 - FLAM_A SINE Alu -6 127 2 344 262 93 0 chr4 99023613 99023720 -103304627 - L2 LINE L2 0 3313 3197 742 149 0 34 chr4 99024500 99024648 -103303699 + L1MB4 LINE L1 6037 6179 -1 21 0 0 0 chr4 99025427 99025448 -103302899 + AT_rich Low_complexity Low_complexity 1 21 0 290 286 11 11 chr4 99025874 99025965 -103302382 - MIR SINE MIR -25 237 147 202 212 15 30 chr4 99025966 99026032 -103302315 + (TTA)n Simple_repeat Simple_repeat 1 65 0 517 275 84 7 chr4 99026033 99026175 -103302172 - MIR SINE MIR -105 157 5 225 265 15 15 chr4 99026614 99026682 -103301665 - MIR3 SINE MIR -130 78 11 198 346 81 71 chr4 99026668 99027227 -103301120 - L2 LINE L2 -94 3178 2599 * 236 367 18 9 chr4 99027354 99027463 -103300884 - L2 LINE L2 -980 2334 2225 334 338 42 21 chr4 99027464 99027606 -103300741 - L2 LINE L2 -2 3270 3126 510 259 7 34 chr4 99027866 99028013 -103300334 - MIR SINE MIR -11 251 109 842 216 75 35 chr4 99028116 99028266 -103300081 + L1MEc LINE L1 1879 2021 -4375 1636 162 30 0 chr4 99028266 99028537 -103299810 + AluJo SINE Alu 11 289 -23 842 216 75 35 chr4 99028537 99028733 -103299614 + L1MEc LINE L1 2021 2239 -4157 1764 172 31 26 chr4 99028793 99029176 -103299171 + L1ME1 LINE L1 5739 6123 -43 745 326 127 58 chr4 99030322 99031166 -103297181 + L2 LINE L2 2361 3271 -42 1418 193 84 11 chr4 99031173 99031448 -103296899 + AluJb SINE Alu 9 303 -9 308 157 0 0 chr4 99031448 99031499 -103296848 + L2 LINE L2 3262 3312 -1 2105 119 0 3 chr4 99032037 99032332 -103296015 + AluSx SINE Alu 1 294 -18 472 282 19 14 chr4 99032455 99032664 -103295683 + L1M4 LINE L1 3956 4165 -1981 364 215 41 33 chr4 99032754 99032875 -103295472 + L1M4 LINE L1 4630 4751 -1395 1497 124 51 36 chr4 99033618 99033893 -103294454 + THE1B LTR MaLR 1 279 -85 1803 120 0 23 chr4 99033893 99034151 -103294196 - AluSc SINE Alu -57 252 1 492 62 0 0 chr4 99034156 99034220 -103294127 + (TTTC)n Simple_repeat Simple_repeat 2 65 0 2600 55 0 0 chr4 99034222 99034533 -103293814 - AluY SINE Alu 0 311 1 1299 106 0 0 chr4 99034545 99034725 -103293622 - AluSp SINE Alu -5 308 129 2264 70 33 3 chr4 99034728 99035030 -103293317 - AluSx SINE Alu -1 311 1 442 119 0 0 chr4 99035036 99035103 -103293244 + THE1B LTR MaLR 309 375 0 324 265 88 29 chr4 99036469 99036571 -103291776 - MIR SINE MIR -115 147 40 348 214 26 0 chr4 99037091 99037176 -103291171 + MIR SINE MIR 60 152 -56 340 247 25 0 chr4 99037172 99037253 -103291094 - L2 LINE L2 0 3313 3231 * 2242 90 0 0 chr4 99037253 99037541 -103290806 + AluSc SINE Alu 1 288 -21 253 310 50 0 chr4 99037612 99037712 -103290635 + MIR SINE MIR 146 250 -12 544 291 122 17 chr4 99038292 99038522 -103289825 + MIR SINE MIR 1 254 -8 321 253 0 22 chr4 99039059 99039150 -103289197 - MIR SINE MIR -3 259 171 312 313 60 15 chr4 99039397 99039531 -103288816 + MIR3 SINE MIR 58 197 -11 5634 86 2 36 chr4 99040042 99040881 -103287466 + L1PB2 LINE L1 5287 6096 -55 1950 139 24 3 chr4 99040881 99041169 -103287178 + AluSx SINE Alu 1 294 -18 5634 86 2 36 chr4 99041169 99041220 -103287127 + L1PB2 LINE L1 6096 6147 -4 189 114 0 0 chr4 99041281 99041294 -103287053 + (GAAAA)n Simple_repeat Simple_repeat 5 17 -22 623 188 0 76 chr4 99041294 99041438 -103286909 + AluJ SINE Alu 1 133 -169 189 114 0 0 chr4 99041438 99041459 -103286888 + (GAAAA)n Simple_repeat Simple_repeat 16 39 0 566 189 11 149 chr4 99041459 99041634 -103286713 + AluJ SINE Alu 129 279 -33 261 0 0 0 chr4 99041634 99041663 -103286684 + (CAAT)n Simple_repeat Simple_repeat 3 31 0 27 0 0 0 chr4 99041727 99041754 -103286593 + AT_rich Low_complexity Low_complexity 1 27 0 1498 188 82 17 chr4 99041754 99042097 -103286250 - MSTD LTR MaLR -32 396 1 1088 219 75 39 chr4 99042561 99042921 -103285426 + MER39 LTR ERV1 288 660 -47 2569 58 0 0 chr4 99043661 99043970 -103284377 + AluY SINE Alu 1 309 -2 2339 96 0 6 chr4 99044394 99044738 -103283609 - AluSx SINE Alu 0 342 1 1440 152 4 45 chr4 99045099 99045363 -103282984 + AluJo SINE Alu 60 312 0 3582 264 44 15 chr4 99046105 99047446 -103280901 + L1MEc LINE L1 36 1266 -4951 7290 186 28 22 chr4 99047459 99049327 -103279020 + L1PA16 LINE L1 3287 5142 -1024 1772 196 3 0 chr4 99049327 99049623 -103278724 + AluJo SINE Alu 1 297 -15 7290 186 28 22 chr4 99049623 99049804 -103278543 + L1PA16 LINE L1 5142 5320 -846 2103 157 0 0 chr4 99049804 99050109 -103278238 + AluSx SINE Alu 1 305 -7 7290 186 28 22 chr4 99050109 99050911 -103277436 + L1PA16 LINE L1 5320 6150 -16 323 221 53 91 chr4 99050945 99051153 -103277194 + L1MEc LINE L1 1250 1449 -4766 704 202 8 0 chr4 99051157 99051281 -103277066 + FLAM_A SINE Alu 1 125 -8 611 291 33 29 chr4 99051444 99051654 -103276693 + MIR SINE MIR 23 233 -29 4970 202 11 15 chr4 99051758 99052944 -103275403 + L1 LINE L1 3987 5167 -979 2040 78 4 7 chr4 99052944 99053214 -103275133 + AluSg SINE Alu 34 302 -8 652 190 0 0 chr4 99053216 99053353 -103274994 - Charlie5 DNA MER1_type -2475 137 1 654 304 70 41 chr4 99056359 99056773 -103271574 + L3 LINE CR1 771 1196 -381 301 314 102 15 chr4 99057070 99057207 -103271140 + L3 LINE CR1 1227 1375 -202 545 229 102 8 chr4 99057210 99057455 -103270892 - HAL1 LINE L1 -1220 1287 1020 2796 117 7 2 chr4 99057455 99057881 -103270466 - MER57B LTR ERV1 0 434 7 1267 271 156 35 chr4 99057888 99058458 -103269889 - HAL1 LINE L1 -1485 1022 522 2739 184 225 53 chr4 99058458 99059328 -103269019 + LTR28 LTR ERV1 1 1020 0 1267 271 156 35 chr4 99059328 99059667 -103268680 - HAL1 LINE L1 -1985 522 3 469 299 203 16 chr4 99059805 99060126 -103268221 + MLT1J LTR MaLR 1 381 -130 213 211 0 0 chr4 99060239 99060277 -103268070 + L3 LINE CR1 1532 1569 -8 323 363 27 12 chr4 99060725 99060876 -103267471 + MIR SINE MIR 33 184 -24 183 259 188 9 chr4 99062158 99062270 -103266077 + MIR SINE MIR 90 221 -41 1619 76 5 0 chr4 99062545 99062743 -103265604 + AluSx SINE Alu 1 199 -113 803 207 12 6 chr4 99063464 99063628 -103264719 - FRAM SINE Alu -12 164 1 267 376 35 35 chr4 99064110 99064280 -103264067 + L2 LINE L2 2631 2800 -514 715 255 69 44 chr4 99064366 99064727 -103263620 - Charlie7 DNA MER1_type -1923 689 320 960 75 15 0 chr4 99064952 99065086 -103263261 - L1MA3 LINE L1 0 6305 6170 289 230 0 17 chr4 99065290 99065388 -103262959 - MLT1E LTR MaLR -211 443 307 544 120 50 0 chr4 99065424 99065524 -103262823 - L1M1 LINE L1 -7432 133 29 5563 123 21 23 chr4 99065546 99067035 -103261312 - L1MA3 LINE L1 -121 6184 4695 814 174 0 12 chr4 99067040 99067201 -103261146 - L1M1 LINE L1 -7405 160 2 806 282 81 57 chr4 99067246 99068188 -103260159 + L1MEd LINE L1 310 1166 -4861 597 246 78 18 chr4 99068409 99068576 -103259771 + MIR SINE MIR 65 241 -21 199 279 0 33 chr4 99068740 99068801 -103259546 - L2 LINE L2 -5 3308 3250 672 231 49 24 chr4 99068839 99069089 -103259258 + MLT1J1 LTR MaLR 1 256 -194 245 211 0 16 chr4 99069115 99069186 -103259161 + MLT1J1 LTR MaLR 339 402 -44 272 286 14 0 chr4 99069227 99069297 -103259050 + L2 LINE L2 3201 3271 -1 236 170 19 0 chr4 99069300 99069353 -103258994 + GA-rich Low_complexity Low_complexity 2 55 0 219 268 0 0 chr4 99070659 99070715 -103257632 + (TA)n Simple_repeat Simple_repeat 1 56 0 1799 127 0 0 chr4 99071178 99071454 -103256893 - L1PB1 LINE L1 -8 6143 5868 1009 168 0 5 chr4 99071455 99071663 -103256684 - L1 LINE L1 -1409 4737 4531 258 175 53 0 chr4 99071664 99071721 -103256626 - L1M4 LINE L1 -1241 4905 4846 568 214 14 0 chr4 99071724 99071864 -103256483 - L1M4 LINE L1 -1443 4703 4562 25 31 0 0 chr4 99072469 99072501 -103255846 + AT_rich Low_complexity Low_complexity 1 32 0 215 246 46 0 chr4 99072536 99072601 -103255746 + (TA)n Simple_repeat Simple_repeat 2 69 0 1885 125 13 58 chr4 99072726 99072904 -103255443 - AluSq SINE Alu -15 298 138 2422 82 0 3 chr4 99072904 99073210 -103255137 - AluY SINE Alu -6 305 1 1885 125 13 58 chr4 99073210 99073342 -103255005 - AluSq SINE Alu -175 138 2 565 370 139 34 chr4 99073472 99074776 -103253571 + L2 LINE L2 228 1668 -1646 6655 131 49 6 chr4 99075294 99075729 -103252618 + Tigger1 DNA MER2_type 5 420 -1998 1750 206 0 10 chr4 99075729 99076040 -103252307 - AluJo SINE Alu -3 309 2 6655 131 49 6 chr4 99076040 99076718 -103251629 + Tigger1 DNA MER2_type 420 1166 -1252 2431 99 145 5 chr4 99076719 99077112 -103251235 + LTR7 LTR ERV1 1 448 -2 8540 103 3 56 chr4 99077114 99078650 -103249697 + HERVH LTR ERV1 1 1455 -6258 2316 53 0 0 chr4 99078884 99079168 -103249179 + L1PA6 LINE L1 5865 6148 -6 25 0 0 0 chr4 99080546 99080571 -103247776 + AT_rich Low_complexity Low_complexity 1 25 0 258 250 78 17 chr4 99080794 99080910 -103247437 + HAL1 LINE L1 1 123 -2384 2276 94 7 0 chr4 99080956 99081253 -103247094 + AluSx SINE Alu 1 299 -13 400 252 46 55 chr4 99082021 99082175 -103246172 - MIR SINE MIR -67 141 38 397 251 164 21 chr4 99083630 99083932 -103244415 - L1MC/D LINE L1 -419 5702 5341 232 186 291 0 chr4 99084224 99084310 -103244037 + MLT1G LTR MaLR 464 574 -16 1285 183 40 126 chr4 99084604 99085057 -103243290 - MLT2D LTR ERVL 0 414 1 1749 217 217 17 chr4 99085209 99085868 -103242479 - LTR50 LTR ERVL -4 791 1 481 226 62 14 chr4 99085875 99086021 -103242326 + Charlie7 DNA MER1_type 5 157 -2455 2199 119 0 0 chr4 99086245 99086540 -103241807 + AluSx SINE Alu 1 295 -17 218 385 31 0 chr4 99087158 99087254 -103241093 - L2 LINE L2 -538 2776 2678 1000 167 72 5 chr4 99087734 99087955 -103240392 - ORSL DNA AcHobo -28 247 12 340 268 146 34 chr4 99087972 99088177 -103240170 - MLT1K LTR MaLR -358 230 3 1937 138 3 28 chr4 99088598 99088918 -103239429 + AluSx SINE Alu 1 312 0 2143 91 0 10 chr4 99089135 99089431 -103238916 - AluY SINE Alu -18 293 1 393 357 34 48 chr4 99089773 99089864 -103238483 + L2 LINE L2 2001 2092 -1222 2588 158 21 0 chr4 99089864 99090283 -103238064 - MSTA LTR MaLR 0 428 1 393 357 34 48 chr4 99090283 99090369 -103237978 + L2 LINE L2 2092 2178 -1136 1871 144 58 0 chr4 99090369 99090660 -103237687 - AluSx SINE Alu -4 308 1 393 357 34 48 chr4 99090660 99090775 -103237572 + L2 LINE L2 2178 2290 -1024 450 316 112 75 chr4 99090789 99091598 -103236749 + L2 LINE L2 2422 3272 0 854 193 73 0 chr4 99091786 99091936 -103236411 - FAM SINE Alu -13 162 2 5217 123 6 7 chr4 99093842 99094685 -103233662 - L1PA14 LINE L1 0 6161 5320 1955 150 23 13 chr4 99094727 99095034 -103233313 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr4 99095101 99095122 -103233225 + AT_rich Low_complexity Low_complexity 1 21 0 305 216 45 75 chr4 99095333 99095467 -103232880 - MLT1H LTR MaLR -52 497 368 673 287 142 24 chr4 99096528 99096859 -103231488 - L3 LINE CR1 -290 1287 918 204 40 0 0 chr4 99096962 99096987 -103231360 + (TA)n Simple_repeat Simple_repeat 1 25 0 1742 182 0 3 chr4 99097738 99098035 -103230312 + AluJo SINE Alu 1 296 -16 322 203 0 0 chr4 99098036 99098100 -103230247 - L1MC4 LINE L1 -1339 6703 6640 26 64 0 0 chr4 99099854 99099901 -103228446 + AT_rich Low_complexity Low_complexity 1 47 0 323 316 188 0 chr4 99100341 99100474 -103227873 - MIR3 SINE MIR -20 188 31 226 210 140 80 chr4 99100664 99100764 -103227583 + L3 LINE CR1 568 673 -904 302 313 0 70 chr4 99101138 99101266 -103227081 - MER117 DNA MER1_type -78 119 1 338 135 0 0 chr4 99102593 99102645 -103225702 + U6 snRNA snRNA 8 59 -48 735 130 14 7 chr4 99102650 99102788 -103225559 + GA-rich Low_complexity Low_complexity 2 140 0 35 41 0 0 chr4 99102906 99102955 -103225392 + AT_rich Low_complexity Low_complexity 1 49 0 2193 112 37 0 chr4 99103198 99103494 -103224853 - AluSq SINE Alu -2 311 5 180 227 68 0 chr4 99105200 99105244 -103223103 + L3 LINE CR1 642 688 -889 1495 183 65 42 chr4 99106051 99106407 -103221940 + MLT1A1 LTR MaLR 2 365 0 1490 260 100 55 chr4 99107219 99107728 -103220619 + Charlie2b DNA MER1_type 36 578 -2204 1829 173 31 0 chr4 99107728 99108017 -103220330 + AluJb SINE Alu 3 300 -12 1490 260 100 55 chr4 99108017 99108107 -103220240 + Charlie2b DNA MER1_type 578 662 -2120 433 205 8 87 chr4 99108107 99108234 -103220113 + L2 LINE L2 731 847 -2467 342 279 64 7 chr4 99108235 99108375 -103219972 + L2 LINE L2 1445 1592 -1722 418 136 0 0 chr4 99108382 99108441 -103219906 + AluJ/FRAM SINE Alu 224 282 -30 2310 269 210 16 chr4 99108472 99108665 -103219682 + L2 LINE L2 1609 1763 -1550 2247 110 23 0 chr4 99108665 99108966 -103219381 - AluSx SINE Alu -4 308 1 2310 269 210 16 chr4 99108966 99109380 -103218967 + L2 LINE L2 1763 2095 -1218 258 32 0 0 chr4 99109380 99109411 -103218936 + (CA)n Simple_repeat Simple_repeat 2 32 0 2310 269 210 16 chr4 99109411 99110236 -103218111 + L2 LINE L2 2095 3313 0 2124 138 0 6 chr4 99110651 99110963 -103217384 + AluJb SINE Alu 1 310 -2 981 287 52 9 chr4 99112186 99112514 -103215833 + L3b LINE CR1 1146 1487 -96 219 235 91 17 chr4 99113480 99113540 -103214807 - MIR SINE MIR -103 105 41 182 114 0 29 chr4 99113624 99113659 -103214688 + (TTCCC)n Simple_repeat Simple_repeat 2 35 0 826 233 114 0 chr4 99113663 99113908 -103214439 + L1MC4 LINE L1 7434 7706 -336 331 324 28 9 chr4 99113964 99114072 -103214275 + HERVL40 LTR ERVL 2009 2118 -3412 1718 200 32 21 chr4 99114076 99114451 -103213896 + LTR40b LTR ERVL 84 462 0 32 26 0 0 chr4 99115054 99115093 -103213254 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr4 99115127 99115155 -103213192 + AT_rich Low_complexity Low_complexity 1 28 0 995 96 22 0 chr4 99115536 99115672 -103212675 + AluSc SINE Alu 155 293 -16 626 303 63 21 chr4 99115724 99115962 -103212385 + MIR SINE MIR 15 262 0 274 212 80 26 chr4 99116088 99116201 -103212146 - L1ME4a LINE L1 -11 6110 5992 2256 90 3 7 chr4 99117162 99117452 -103210895 + AluSc SINE Alu 1 289 -20 392 240 10 10 chr4 99117790 99117890 -103210457 - LTR33 LTR ERVL 0 521 422 193 290 20 70 chr4 99117913 99118013 -103210334 + L3 LINE CR1 588 682 -895 3382 135 19 11 chr4 99118247 99118767 -103209580 + Tigger7 DNA MER2_type 2 525 -208 418 228 11 11 chr4 99118761 99118853 -103209494 + Tigger7 DNA MER2_type 2396 2487 0 * 313 299 158 49 chr4 99120307 99120491 -103207856 + MIR SINE MIR 23 226 -36 354 284 52 15 chr4 99120569 99120703 -103207644 - MIR SINE MIR -4 258 120 320 290 99 87 chr4 99120785 99120947 -103207400 - MER5A DNA MER1_type -1 177 25 943 110 76 141 chr4 99121565 99121605 -103206742 - Charlie5 DNA MER1_type -2 2622 2581 1409 190 48 3 chr4 99121605 99121895 -103206452 - AluJo SINE Alu -9 303 1 943 110 76 141 chr4 99121895 99121980 -103206367 - Charlie5 DNA MER1_type -43 2581 2492 2286 92 0 0 chr4 99121980 99122272 -103206075 - AluSx SINE Alu -20 292 1 943 110 76 141 chr4 99122272 99122435 -103205912 - Charlie5 DNA MER1_type -132 2492 2352 2278 86 3 3 chr4 99122477 99122779 -103205568 + AluSx SINE Alu 3 304 -8 693 190 0 0 chr4 99122781 99122918 -103205429 - Charlie5 DNA MER1_type -2475 137 1 21 57 0 0 chr4 99126155 99126190 -103202157 + AT_rich Low_complexity Low_complexity 1 35 0 187 114 29 29 chr4 99127876 99127911 -103200436 - MIR SINE MIR -13 249 215 388 249 95 75 chr4 99127993 99128037 -103200310 - L1MC4a LINE L1 -1869 5939 5897 2341 86 3 0 chr4 99128037 99128327 -103200020 - AluSp SINE Alu -22 291 1 388 249 95 75 chr4 99128327 99128523 -103199824 - L1MC4a LINE L1 -1911 5897 5694 213 284 68 0 chr4 99128661 99128735 -103199612 - MIR SINE MIR -50 212 134 22 35 0 0 chr4 99130212 99130241 -103198106 + AT_rich Low_complexity Low_complexity 1 29 0 913 217 0 0 chr4 99132304 99132470 -103195877 + FRAM SINE Alu 1 166 0 1888 107 8 8 chr4 99133733 99133996 -103194351 - AluSg SINE Alu -47 263 1 383 209 165 43 chr4 99134161 99134391 -103193956 - L1MC4a LINE L1 -1872 5936 5679 589 261 143 35 chr4 99134406 99134636 -103193711 - L1MC4a LINE L1 -2059 5749 5495 2633 143 29 16 chr4 99135067 99135513 -103192834 - Tigger2 DNA MER2_type 0 2718 2267 528 101 0 0 chr4 99135497 99135566 -103192781 - Tigger2 DNA MER2_type -2649 69 1 * 803 241 9 66 chr4 99137123 99137223 -103191124 - MIR SINE MIR -8 254 150 1894 113 35 35 chr4 99137223 99137532 -103190815 - AluSg SINE Alu 0 309 1 803 241 9 66 chr4 99137532 99137658 -103190689 - MIR SINE MIR -112 150 40 327 85 0 0 chr4 99137736 99137783 -103190564 + (TG)n Simple_repeat Simple_repeat 2 48 0 1690 189 0 19 chr4 99137787 99138099 -103190248 - AluJb SINE Alu -4 308 3 220 342 60 47 chr4 99138192 99138341 -103190006 + MER5A DNA MER1_type 18 168 -21 2344 94 0 0 chr4 99139148 99139445 -103188902 - AluSg1 SINE Alu -12 297 1 459 338 72 22 chr4 99139566 99139886 -103188461 - L3 LINE CR1 -200 1377 1042 1578 152 86 4 chr4 99139995 99140264 -103188083 - AluJo SINE Alu -20 292 2 188 261 0 0 chr4 99140675 99140721 -103187626 - L2 LINE L2 -6 3307 3262 1073 271 56 54 chr4 99140943 99141468 -103186879 - L2 LINE L2 -2 3311 2781 312 333 95 0 chr4 99141569 99141695 -103186652 - MARNA DNA Mariner -381 205 68 2230 103 7 0 chr4 99141794 99142096 -103186251 - AluY SINE Alu -7 304 1 2603 74 25 22 chr4 99142645 99143008 -103185339 - THE1B LTR MaLR 0 364 1 814 275 47 13 chr4 99143425 99143658 -103184689 + MIR SINE MIR 12 252 -10 258 105 0 0 chr4 99143982 99144020 -103184327 + (CA)n Simple_repeat Simple_repeat 2 39 0 225 0 0 0 chr4 99144220 99144245 -103184102 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr4 99144586 99144614 -103183733 + AT_rich Low_complexity Low_complexity 1 28 0 1150 258 164 17 chr4 99144671 99145086 -103183261 - L2 LINE L2 0 3313 2838 2362 98 0 0 chr4 99145086 99145392 -103182955 - AluSg SINE Alu -4 306 1 2189 119 0 0 chr4 99146073 99146383 -103181964 - AluSx SINE Alu -2 310 1 22 0 0 0 chr4 99146471 99146493 -103181854 + AT_rich Low_complexity Low_complexity 1 22 0 1313 219 36 7 chr4 99146505 99146784 -103181563 - AluJo SINE Alu -25 287 1 825 129 40 84 chr4 99147395 99147598 -103180749 + L1MB2 LINE L1 5936 6132 -39 27 62 0 0 chr4 99148226 99148274 -103180073 + AT_rich Low_complexity Low_complexity 1 48 0 691 274 44 10 chr4 99148581 99148785 -103179562 + MIR SINE MIR 18 228 -34 412 188 0 0 chr4 99149494 99149563 -103178784 + Tigger2 DNA MER2_type 1 69 -2649 * 2339 140 48 43 chr4 99149561 99149808 -103178539 + Tigger2 DNA MER2_type 2280 2531 -187 2416 83 0 0 chr4 99149808 99150109 -103178238 + AluSg SINE Alu 1 301 -9 2339 140 48 43 chr4 99150109 99150298 -103178049 + Tigger2 DNA MER2_type 2531 2718 0 21 0 0 0 chr4 99150298 99150319 -103178028 + AT_rich Low_complexity Low_complexity 1 21 0 2029 145 3 3 chr4 99150723 99151027 -103177320 - AluJb SINE Alu -8 304 1 1820 155 7 20 chr4 99151158 99151461 -103176886 - AluJb SINE Alu -13 299 1 1184 272 54 38 chr4 99152140 99152640 -103175707 - LTR33A LTR ERVL -3 520 13 2185 83 28 0 chr4 99153121 99153409 -103174938 - AluSg SINE Alu -14 296 1 2274 94 0 3 chr4 99153425 99153733 -103174614 - AluY SINE Alu 0 311 5 907 182 6 28 chr4 99153997 99154173 -103174174 - AluJo SINE Alu -14 298 127 1744 174 26 3 chr4 99154442 99154747 -103173600 + AluJo SINE Alu 1 312 0 22 0 0 0 chr4 99155153 99155175 -103173172 + AT_rich Low_complexity Low_complexity 1 22 0 411 230 12 61 chr4 99155271 99155436 -103172911 - L1MC5 LINE L1 -353 7608 7452 307 273 83 45 chr4 99156359 99156491 -103171856 - MIR SINE MIR -56 206 70 222 364 55 18 chr4 99156525 99156635 -103171712 + MIR3 SINE MIR 13 126 -82 2188 102 3 55 chr4 99157382 99157707 -103170640 + AluSg SINE Alu 1 308 -2 1938 143 3 19 chr4 99158550 99158858 -103169489 + AluJo SINE Alu 1 303 -9 291 331 76 7 chr4 99159684 99159829 -103168518 + MER5A DNA MER1_type 35 189 0 26 0 0 0 chr4 99161382 99161408 -103166939 + AT_rich Low_complexity Low_complexity 1 26 0 853 137 0 8 chr4 99161474 99161598 -103166749 + FLAM_C SINE Alu 1 123 -20 180 0 0 0 chr4 99161603 99161623 -103166724 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1371 151 42 3 chr4 99163601 99163885 -103164462 - L1MA7 LINE L1 -6 6285 5991 4324 173 67 10 chr4 99164214 99165148 -103163199 - L1MB5 LINE L1 0 6174 5183 1142 187 5 23 chr4 99165149 99165368 -103162979 - AluJb SINE Alu -19 293 79 366 276 19 0 chr4 99165495 99165600 -103162747 - L1ME LINE L1 -461 5660 5554 1500 210 0 26 chr4 99165793 99166098 -103162249 - AluJo SINE Alu -15 297 1 2289 118 0 0 chr4 99166250 99166563 -103161784 - AluSq SINE Alu 0 313 1 1905 127 14 7 chr4 99166584 99166868 -103161479 - AluSg SINE Alu -24 286 1 285 252 126 47 chr4 99167365 99167492 -103160855 - L2 LINE L2 -211 3102 2966 216 67 0 0 chr4 99168299 99168329 -103160018 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1704 175 0 11 chr4 99168331 99168616 -103159731 - AluJb SINE Alu -30 282 1 182 274 143 12 chr4 99170420 99170504 -103157843 + L2 LINE L2 3219 3313 0 848 142 0 0 chr4 99171337 99171471 -103156876 - MER2 DNA MER2_type -139 206 73 2089 105 3 100 chr4 99171472 99171842 -103156505 + MER1B DNA MER1_type 6 339 0 450 181 0 0 chr4 99171844 99171916 -103156431 - MER2 DNA MER2_type -264 81 10 243 0 0 0 chr4 99172595 99172622 -103155725 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1671 173 14 0 chr4 99172624 99172901 -103155446 - AluJb SINE Alu -31 281 1 1701 163 27 36 chr4 99172901 99173202 -103155145 - AluJb SINE Alu -14 298 1 1081 135 149 21 chr4 99173238 99173519 -103154828 + MER5C DNA MER1_type 4 320 -4 345 287 0 19 chr4 99173822 99173930 -103154417 + CT-rich Low_complexity Low_complexity 2 107 0 765 251 35 30 chr4 99174233 99174413 -103153934 + MIR SINE MIR 10 193 -69 2199 117 0 7 chr4 99174413 99174713 -103153634 + AluSx SINE Alu 1 298 -14 765 251 35 30 chr4 99174713 99174735 -103153612 + MIR SINE MIR 193 213 -49 2261 92 3 0 chr4 99176108 99176403 -103151944 - AluSc SINE Alu -13 296 1 269 294 49 68 chr4 99176557 99176720 -103151627 - L3 LINE CR1 -99 1478 1319 4687 163 45 6 chr4 99176855 99177083 -103151264 - MER21B LTR ERV1 -11 852 634 2007 141 7 10 chr4 99177083 99177380 -103150967 - AluSx SINE Alu -16 296 1 4687 163 45 6 chr4 99177380 99177971 -103150376 - MER21B LTR ERV1 -229 634 1 1549 202 24 24 chr4 99178156 99178497 -103149850 - MLT1A1 LTR MaLR -24 341 1 2164 187 18 93 chr4 99178508 99179107 -103149240 + MLT2B3 LTR ERVL 1 554 0 1540 126 18 0 chr4 99179107 99179330 -103149017 - MLT1A1-int LTR MaLR -6 1729 1503 390 148 0 0 chr4 99180578 99180639 -103147708 + MADE1 DNA Mariner 20 80 0 980 252 49 62 chr4 99180973 99181358 -103146989 + L2 LINE L2 2934 3313 0 3501 50 18 2 chr4 99181376 99181813 -103146534 - MLT2A1 LTR ERVL 0 444 1 215 264 0 19 chr4 99181847 99181900 -103146447 + L2 LINE L2 3221 3272 0 1130 112 0 13 chr4 99182543 99182695 -103145652 + AluSq/x SINE Alu 1 150 -162 449 289 49 21 chr4 99182849 99182991 -103145356 - MIR3 SINE MIR -21 187 42 10493 140 31 18 chr4 99183142 99183837 -103144510 - L1MA2 LINE L1 0 6304 5620 2225 96 0 3 chr4 99183837 99184130 -103144217 - AluSc SINE Alu -17 292 1 10493 140 31 18 chr4 99184130 99185940 -103142407 - L1MA2 LINE L1 -684 5620 3749 2398 89 0 0 chr4 99185940 99186243 -103142104 - AluY SINE Alu -8 303 1 10493 140 31 18 chr4 99186243 99186713 -103141634 - L1MA2 LINE L1 -2555 3749 3287 1688 144 4 29 chr4 99188353 99188631 -103139716 - AluJo SINE Alu -37 275 5 517 298 30 18 chr4 99191159 99191327 -103137020 - MIR SINE MIR -71 191 22 296 302 36 58 chr4 99191269 99191408 -103136939 + MIR SINE MIR 8 143 -119 * 219 408 47 0 chr4 99192567 99192736 -103135611 + L3b LINE CR1 1136 1312 -271 299 221 0 105 chr4 99193858 99193953 -103134394 - MIR3 SINE MIR -13 195 111 644 132 11 109 chr4 99194123 99194176 -103134171 - L1MB4 LINE L1 0 6180 6123 2045 93 0 11 chr4 99194176 99194444 -103133903 - AluSx SINE Alu -12 300 36 644 132 11 109 chr4 99194444 99194564 -103133783 - L1MB4 LINE L1 -57 6123 6024 2117 111 3 0 chr4 99195911 99196199 -103132148 + AluJo SINE Alu 21 309 -3 294 294 184 15 chr4 99196514 99196650 -103131697 + MER5B DNA MER1_type 20 178 0 2114 108 4 0 chr4 99196941 99197220 -103131127 + AluSx SINE Alu 1 280 -32 2194 110 0 10 chr4 99198531 99198839 -103129508 - AluSx SINE Alu -7 305 1 2308 110 0 3 chr4 99198852 99199162 -103129185 - AluSc SINE Alu 0 309 1 1072 222 64 92 chr4 99199336 99199804 -103128543 - LTR16A1 LTR ERVL 0 457 3 726 270 0 56 chr4 99200402 99200617 -103127730 - L2 LINE L2 0 3313 3111 301 251 25 83 chr4 99200719 99200894 -103127453 - L2 LINE L2 -319 2953 2788 23 33 0 0 chr4 99201621 99201651 -103126696 + AT_rich Low_complexity Low_complexity 1 30 0 274 304 87 0 chr4 99201914 99202006 -103126341 + MIR3 SINE MIR 78 177 -31 207 0 0 0 chr4 99202318 99202341 -103126006 + (TA)n Simple_repeat Simple_repeat 1 23 0 1460 124 50 0 chr4 99203216 99203434 -103124913 + MER30 DNA MER1_type 2 230 0 270 171 0 0 chr4 99203953 99203994 -103124353 - LTR3b LTR ERVK 0 500 460 3331 109 12 32 chr4 99203995 99204501 -103123846 - LTR3b LTR ERVK -4 496 1 2013 117 3 20 chr4 99204509 99204808 -103123539 + AluSx SINE Alu 1 294 -18 438 347 141 1 chr4 99205299 99205490 -103122857 + MIR SINE MIR 4 218 -44 291 305 219 8 chr4 99206826 99207082 -103121265 - L2 LINE L2 -566 2748 2439 193 361 71 24 chr4 99207182 99207351 -103120996 + L2 LINE L2 2309 2485 -829 189 0 0 0 chr4 99207629 99207650 -103120697 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr4 99209269 99209290 -103119057 + AT_rich Low_complexity Low_complexity 1 21 0 309 327 154 7 chr4 99209463 99209647 -103118700 - MIR SINE MIR -38 224 14 288 333 111 66 chr4 99211271 99211776 -103116571 - L2 LINE L2 -18 3254 2736 22 0 0 0 chr4 99211785 99211807 -103116540 + AT_rich Low_complexity Low_complexity 1 22 0 665 255 101 24 chr4 99211811 99211920 -103116427 - MIR SINE MIR -2 260 161 2144 62 52 10 chr4 99211920 99212209 -103116138 - AluY SINE Alu -10 301 1 665 255 101 24 chr4 99212209 99212307 -103116040 - MIR SINE MIR -101 161 37 2110 113 0 0 chr4 99213821 99214096 -103114251 + AluSx SINE Alu 1 275 -37 275 70 0 23 chr4 99214099 99214142 -103114205 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1213 245 99 48 chr4 99214901 99215097 -103113250 - MLT1D LTR MaLR -2 503 318 4177 123 97 1 chr4 99215097 99215570 -103112777 - L1MA8 LINE L1 -3 6288 5719 423 0 0 0 chr4 99215570 99215617 -103112730 + (TG)n Simple_repeat Simple_repeat 2 48 0 4177 123 97 1 chr4 99215617 99215874 -103112473 - L1MA8 LINE L1 -572 5719 5488 1213 245 99 48 chr4 99215874 99216151 -103112196 - MLT1D LTR MaLR -187 318 6 498 125 38 0 chr4 99216181 99216261 -103112086 - MER51A LTR ERV1 -81 553 471 1010 136 0 0 chr4 99216465 99216605 -103111742 - AluSg/x SINE Alu -40 272 133 212 292 153 0 chr4 99216794 99216866 -103111481 + MIR SINE MIR 50 132 -130 23 0 0 0 chr4 99216943 99216966 -103111381 + AT_rich Low_complexity Low_complexity 1 23 0 1951 184 53 63 chr4 99218927 99219437 -103108910 - MLT1D LTR MaLR 0 505 1 274 314 97 16 chr4 99219934 99220060 -103108287 - MIR SINE MIR -54 154 13 522 321 127 0 chr4 99221188 99221456 -103106891 + L1MC4a LINE L1 5609 5910 -1898 849 69 121 0 chr4 99221592 99221708 -103106639 + AluSg/x SINE Alu 163 292 -18 1710 146 60 0 chr4 99224889 99225187 -103103160 - AluSx SINE Alu 0 314 1 232 200 77 0 chr4 99225277 99225342 -103103005 - HAL1 LINE L1 -333 2174 2105 23 33 0 0 chr4 99225865 99225895 -103102452 + AT_rich Low_complexity Low_complexity 1 30 0 180 217 0 0 chr4 99226227 99226273 -103102074 + (CATA)n Simple_repeat Simple_repeat 3 48 0 212 217 17 17 chr4 99226541 99226601 -103101746 + (TATATG)n Simple_repeat Simple_repeat 2 61 0 1600 106 59 33 chr4 99226606 99226838 -103101509 + Tigger5 DNA MER2_type 4 229 -2094 2124 106 10 3 chr4 99226838 99227131 -103101216 - AluSx SINE Alu -17 295 1 1600 106 59 33 chr4 99227131 99227214 -103101133 + Tigger5 DNA MER2_type 229 2323 0 432 237 61 0 chr4 99227545 99227659 -103100688 - MIR SINE MIR -56 206 86 32 0 0 0 chr4 99227659 99227691 -103100656 + AT_rich Low_complexity Low_complexity 1 32 0 12628 47 0 0 chr4 99227691 99230021 -103098326 - L1PA5 LINE L1 -8 6146 3816 182 262 0 0 chr4 99230147 99230189 -103098158 - MIR SINE MIR -109 153 112 524 256 70 1 chr4 99232302 99232434 -103095913 - MIR SINE MIR -36 172 33 2103 79 11 4 chr4 99232502 99232804 -103095543 - AluY SINE Alu 0 304 1 24 0 0 0 chr4 99234092 99234116 -103094231 + AT_rich Low_complexity Low_complexity 1 24 0 613 213 16 0 chr4 99234230 99234352 -103093995 + MER5C DNA MER1_type 1 124 -200 2169 122 0 6 chr4 99235729 99236040 -103092307 - AluSg SINE Alu -1 309 1 786 257 172 50 chr4 99236051 99236435 -103091912 + L2 LINE L2 2752 3236 -77 2288 82 7 3 chr4 99236435 99236738 -103091609 - AluY SINE Alu -7 304 1 786 257 172 50 chr4 99236738 99236827 -103091520 + L2 LINE L2 3236 3313 0 242 219 41 0 chr4 99237652 99237725 -103090622 + (TA)n Simple_repeat Simple_repeat 1 76 0 396 323 127 5 chr4 99237941 99238130 -103090217 + MIR SINE MIR 39 250 -12 348 306 54 0 chr4 99238291 99238402 -103089945 - MIR SINE MIR -24 238 122 2072 70 4 4 chr4 99238766 99239037 -103089310 - AluY SINE Alu -2 309 39 855 227 86 0 chr4 99239945 99240143 -103088204 + MER58A DNA MER1_type 2 216 -8 309 51 0 0 chr4 99241094 99241133 -103087214 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1858 114 0 12 chr4 99241145 99241400 -103086947 - AluSx SINE Alu -57 255 4 337 274 92 39 chr4 99241404 99241557 -103086790 + MIR SINE MIR 102 262 0 27 73 0 0 chr4 99241855 99241910 -103086437 + AT_rich Low_complexity Low_complexity 1 55 0 243 267 99 10 chr4 99244190 99244291 -103084056 + MIR SINE MIR 88 197 -65 271 268 175 21 chr4 99244459 99244556 -103083791 - L2 LINE L2 -21 3251 3140 189 107 0 0 chr4 99245097 99245125 -103083222 + (T)n Simple_repeat Simple_repeat 1 28 0 1000 174 108 0 chr4 99245712 99245925 -103082422 + MER46A DNA MER2_type 1 236 0 2116 129 0 3 chr4 99245996 99246298 -103082049 + AluSx SINE Alu 1 301 -11 263 186 0 51 chr4 99246397 99246456 -103081891 - tRNA-Cys-TGC tRNA tRNA -19 56 1 22 0 0 0 chr4 99247162 99247184 -103081163 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr4 99249361 99249383 -103078964 + (T)n Simple_repeat Simple_repeat 1 22 0 2832 0 0 0 chr4 99249602 99249909 -103078438 - AluYa5 SINE Alu -4 307 1 33 25 0 0 chr4 99250583 99250623 -103077724 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 99252002 99252023 -103076324 + AT_rich Low_complexity Low_complexity 1 21 0 277 353 12 0 chr4 99252493 99252578 -103075769 - MIR SINE MIR -150 112 27 194 368 46 11 chr4 99252777 99252957 -103075390 - MIR SINE MIR -40 222 37 22 0 0 0 chr4 99254812 99254834 -103073513 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 99254896 99254926 -103073421 + AT_rich Low_complexity Low_complexity 1 30 0 304 271 136 29 chr4 99255615 99255755 -103072592 - MIR SINE MIR -26 236 82 2271 102 0 0 chr4 99256866 99257169 -103071178 - AluY SINE Alu -8 303 1 26 93 0 0 chr4 99257255 99257330 -103071017 + AT_rich Low_complexity Low_complexity 1 75 0 1968 129 7 0 chr4 99257669 99257976 -103070371 + AluSg SINE Alu 1 309 0 2336 67 3 0 chr4 99260061 99260386 -103067961 + AluSp SINE Alu 1 326 0 276 57 19 38 chr4 99261486 99261539 -103066808 + (TTTTC)n Simple_repeat Simple_repeat 3 54 0 2053 126 3 25 chr4 99261541 99261858 -103066489 - AluSx SINE Alu -2 310 1 251 253 69 23 chr4 99262197 99262284 -103066063 - L2 LINE L2 0 3272 3182 1048 250 67 67 chr4 99263196 99263644 -103064703 + LTR16A LTR ERVL 1 448 -2 324 275 0 0 chr4 99264272 99264352 -103063995 + MER20 DNA MER1_type 121 200 -19 1674 146 60 0 chr4 99264398 99264691 -103063656 - AluJb SINE Alu 0 309 1 1438 169 43 110 chr4 99265097 99265516 -103062831 - MLT1B LTR MaLR 0 396 1 1840 146 148 13 chr4 99266661 99267038 -103061309 - MSTA LTR MaLR 0 428 1 396 345 150 43 chr4 99269421 99269914 -103058433 + L3 LINE CR1 51 596 -981 21 0 0 0 chr4 99270365 99270386 -103057961 + AT_rich Low_complexity Low_complexity 1 21 0 1080 324 89 9 chr4 99270442 99271124 -103057223 - L2 LINE L2 -98 3215 2475 345 338 109 62 chr4 99271230 99271715 -103056632 - L2 LINE L2 -2424 890 383 269 321 31 37 chr4 99271730 99271892 -103056455 - L2 LINE L2 -3057 257 97 239 91 0 0 chr4 99271918 99271951 -103056396 + L2 LINE L2 3190 3222 -91 191 86 0 29 chr4 99272020 99272055 -103056292 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 1914 159 31 23 chr4 99272865 99273217 -103055130 - MLT1A1 LTR MaLR 0 365 11 2196 105 0 10 chr4 99274241 99274535 -103053812 - AluSx SINE Alu -21 291 1 423 331 14 99 chr4 99274799 99275213 -103053134 - L2 LINE L2 -376 2938 2560 2040 129 28 84 chr4 99275233 99275660 -103052687 - LTR57 LTR ERVL -7 404 2 268 310 101 19 chr4 99275756 99275914 -103052433 - L2 LINE L2 -1019 2295 2125 393 132 0 26 chr4 99276012 99276088 -103052259 + L1MB2 LINE L1 5872 5945 -226 2248 102 0 0 chr4 99276131 99276424 -103051923 + AluSx SINE Alu 1 293 -19 1214 143 40 13 chr4 99276425 99276649 -103051698 + L1MB2 LINE L1 5935 6164 -7 475 287 205 8 chr4 99276651 99276919 -103051428 - L2 LINE L2 -1365 1949 1629 40 0 0 0 chr4 99277718 99277758 -103050589 + AT_rich Low_complexity Low_complexity 1 40 0 399 268 40 31 chr4 99278113 99278341 -103050006 - L2 LINE L2 -195 3077 2848 222 278 69 0 chr4 99278398 99278470 -103049877 - L2 LINE L2 -567 2747 2671 1349 182 66 48 chr4 99278484 99278819 -103049528 - MER58B DNA MER1_type 0 341 1 319 300 22 0 chr4 99279446 99279536 -103048811 + MIR SINE MIR 40 131 -131 26 0 0 0 chr4 99281193 99281219 -103047128 + AT_rich Low_complexity Low_complexity 1 26 0 2277 109 0 6 chr4 99283763 99284075 -103044272 + AluSg SINE Alu 1 310 0 40 94 0 0 chr4 99284688 99284805 -103043542 + AT_rich Low_complexity Low_complexity 1 117 0 23 33 0 0 chr4 99285607 99285637 -103042710 + AT_rich Low_complexity Low_complexity 1 30 0 2449 73 0 0 chr4 99285788 99286088 -103042259 - AluSc SINE Alu -9 300 1 855 172 8 0 chr4 99286108 99286242 -103042105 - AluJo SINE Alu -177 135 1 546 234 42 48 chr4 99286861 99287028 -103041319 - MIR SINE MIR -13 249 84 201 241 51 25 chr4 99287025 99287104 -103041243 - L2 LINE L2 -84 3229 3149 * 421 282 120 45 chr4 99287525 99287791 -103040556 - L3 LINE CR1 -106 1471 1186 355 326 35 14 chr4 99288184 99288325 -103040022 - MIR SINE MIR -27 235 92 938 191 6 6 chr4 99288661 99288823 -103039524 - MER68 LTR ERV1 -1 561 400 618 94 0 0 chr4 99288826 99288911 -103039436 - AluS SINE Alu -227 85 1 289 252 84 37 chr4 99289223 99289330 -103039017 + L2 LINE L2 3202 3313 0 771 179 0 8 chr4 99289352 99289486 -103038861 + FLAM_C SINE Alu 1 133 0 360 301 77 56 chr4 99290491 99290687 -103037660 + MIR3 SINE MIR 6 205 -3 183 80 0 0 chr4 99291169 99291194 -103037153 + (T)n Simple_repeat Simple_repeat 1 25 0 2405 60 0 0 chr4 99291195 99291480 -103036867 + AluY SINE Alu 8 292 -19 1207 200 85 41 chr4 99291482 99291752 -103036595 - AluJo SINE Alu -30 282 1 1539 139 0 25 chr4 99292136 99292380 -103035967 + AluJb SINE Alu 56 293 -19 32 43 0 0 chr4 99292483 99292529 -103035818 + AT_rich Low_complexity Low_complexity 1 46 0 2183 93 0 50 chr4 99292605 99292928 -103035419 + AluSc SINE Alu 1 307 -2 22 80 0 0 chr4 99293682 99293732 -103034615 + AT_rich Low_complexity Low_complexity 1 50 0 449 125 0 12 chr4 99294448 99294528 -103033819 + (TCCC)n Simple_repeat Simple_repeat 2 80 0 2131 89 0 4 chr4 99294528 99294798 -103033549 - AluSc SINE Alu -40 269 1 305 338 101 65 chr4 99295086 99295500 -103032847 + L2 LINE L2 2827 3255 -17 1509 179 3 30 chr4 99295858 99296155 -103032192 + AluJo SINE Alu 1 289 -23 382 291 155 64 chr4 99296515 99296889 -103031458 - L2 LINE L2 -340 2974 2567 2484 54 0 3 chr4 99297285 99297582 -103030765 - AluY SINE Alu -15 296 1 22 0 0 0 chr4 99298171 99298193 -103030154 + AT_rich Low_complexity Low_complexity 1 22 0 296 228 70 70 chr4 99298314 99298428 -103029919 + L3 LINE CR1 1441 1554 -23 1046 214 19 5 chr4 99299358 99299568 -103028779 + MER58A DNA MER1_type 1 213 -11 243 295 150 40 chr4 99299662 99299835 -103028512 + L2 LINE L2 3122 3313 0 418 262 133 17 chr4 99299875 99300075 -103028272 - MIR SINE MIR 0 262 40 23 0 0 0 chr4 99300638 99300661 -103027686 + AT_rich Low_complexity Low_complexity 1 23 0 226 237 0 0 chr4 99300735 99300794 -103027553 + T-rich Low_complexity Low_complexity 1 59 0 2006 123 48 0 chr4 99300898 99301191 -103027156 + AluSc SINE Alu 1 307 -2 2024 128 3 3 chr4 99302215 99302504 -103025843 - AluSx SINE Alu -23 289 1 1428 190 26 8 chr4 99302764 99303032 -103025315 - AluJo SINE Alu -39 273 1 574 264 35 6 chr4 99303622 99303796 -103024551 + MER5A DNA MER1_type 5 183 -6 957 176 28 0 chr4 99303819 99304001 -103024346 + MER5A DNA MER1_type 3 189 0 353 208 232 8 chr4 99304695 99304820 -103023527 - HAL1 LINE L1 -1909 598 446 2140 83 0 4 chr4 99304873 99305151 -103023196 - AluY SINE Alu -34 277 1 384 314 26 7 chr4 99305350 99305503 -103022844 - L1ME LINE L1 -481 5640 5485 1593 171 53 4 chr4 99305630 99305911 -103022436 + AluSx SINE Alu 1 295 -17 468 260 199 22 chr4 99305914 99306095 -103022252 + MIR SINE MIR 29 241 -21 2060 104 40 10 chr4 99306199 99306496 -103021851 - AluSg SINE Alu -4 306 1 394 299 110 24 chr4 99306697 99306861 -103021486 - MIR3 SINE MIR -26 182 5 364 290 52 52 chr4 99306897 99307052 -103021295 - L2 LINE L2 0 3313 3159 359 304 15 29 chr4 99307702 99308050 -103020297 + CT-rich Low_complexity Low_complexity 1 342 0 405 231 125 81 chr4 99308674 99308809 -103019538 + HAL1b LINE L1 755 883 -465 1557 178 9 54 chr4 99308809 99309124 -103019223 - AluJo SINE Alu -7 305 5 405 231 125 81 chr4 99309124 99309556 -103018791 + HAL1b LINE L1 883 1347 -1 1760 118 19 8 chr4 99310097 99310359 -103017988 + AluSx SINE Alu 6 270 -42 904 174 32 73 chr4 99310471 99310689 -103017658 - L1PB4 LINE L1 -20 6136 5928 * 1701 134 11 3 chr4 99310666 99310950 -103017397 - L1PA15 LINE L1 -85 6080 5795 1601 141 110 0 chr4 99310963 99311117 -103017230 - AluSx SINE Alu -2 310 174 285 29 0 0 chr4 99311117 99311151 -103017196 + (TG)n Simple_repeat Simple_repeat 2 35 0 1601 141 110 0 chr4 99311151 99311259 -103017088 - AluSx SINE Alu -138 174 19 344 316 87 26 chr4 99311310 99311541 -103016806 - MLT1L LTR MaLR -10 605 361 832 202 0 33 chr4 99311714 99311897 -103016450 - MER5B DNA MER1_type 0 178 2 642 309 66 47 chr4 99311989 99312309 -103016038 - MLT1K LTR MaLR -230 358 33 199 94 0 0 chr4 99312329 99312361 -103015986 + L2 LINE L2 3282 3313 0 1712 175 36 26 chr4 99312836 99313145 -103015202 + AluJb SINE Alu 1 312 0 2325 91 7 10 chr4 99313347 99313656 -103014691 + AluSp SINE Alu 1 308 -5 719 231 63 35 chr4 99313799 99313898 -103014449 - HAL1b LINE L1 -661 687 592 2462 85 0 3 chr4 99313898 99314205 -103014142 - AluSc SINE Alu -3 306 1 719 231 63 35 chr4 99314205 99314391 -103013956 - HAL1b LINE L1 -756 592 394 903 248 130 31 chr4 99314475 99314751 -103013596 - HAL1b LINE L1 -686 662 415 351 96 0 0 chr4 99314751 99314803 -103013544 + (TG)n Simple_repeat Simple_repeat 2 53 0 903 248 130 31 chr4 99314803 99315035 -103013312 - HAL1b LINE L1 -933 415 104 203 179 0 0 chr4 99315162 99315201 -103013146 + T-rich Low_complexity Low_complexity 1 39 0 2159 123 3 0 chr4 99315715 99316016 -103012331 - AluSx SINE Alu -10 302 1 2332 74 0 0 chr4 99316028 99316335 -103012012 - AluY SINE Alu 0 307 1 659 268 126 17 chr4 99316368 99316599 -103011748 + MIR SINE MIR 2 257 -5 5745 155 78 37 chr4 99317678 99318515 -103009832 - L1MA4 LINE L1 -2 6298 5496 2013 142 7 10 chr4 99318515 99318818 -103009529 - AluSx SINE Alu -10 302 1 5745 155 78 37 chr4 99318818 99319707 -103008640 - L1MA4 LINE L1 -804 5496 4452 2089 132 24 0 chr4 99319707 99319995 -103008352 + AluSq SINE Alu 1 295 -18 5745 155 78 37 chr4 99319995 99320444 -103007903 - L1MA4 LINE L1 -1848 4452 4023 268 263 128 11 chr4 99320449 99320628 -103007719 + L1ME4a LINE L1 5906 6105 -16 369 339 12 58 chr4 99320721 99320851 -103007496 - L3 LINE CR1 -72 1505 1383 2206 106 3 3 chr4 99320851 99321152 -103007195 - AluSx SINE Alu -11 301 1 369 339 12 58 chr4 99321152 99321192 -103007155 - L3 LINE CR1 -194 1383 1343 248 298 268 26 chr4 99321326 99321554 -103006793 + L2 LINE L2 2008 2290 -1024 224 300 25 0 chr4 99321592 99321672 -103006675 + L2 LINE L2 3186 3267 -5 363 350 117 0 chr4 99321705 99321842 -103006505 + L2 LINE L2 3106 3258 -14 233 303 91 0 chr4 99321857 99321956 -103006391 + MIR SINE MIR 81 188 -74 335 93 0 19 chr4 99322016 99322070 -103006277 + Alu SINE Alu 244 296 -6 1159 220 127 48 chr4 99322112 99322575 -103005772 + MLT1D LTR MaLR 1 500 -5 425 210 112 45 chr4 99322594 99322818 -103005529 + L1MC5 LINE L1 7611 7849 -112 * 837 186 45 116 chr4 99322815 99323169 -103005178 - L1MC5 LINE L1 -914 7047 6719 1349 253 96 22 chr4 99323193 99323890 -103004457 - L2 LINE L2 0 3313 2555 200 227 0 0 chr4 99326191 99326235 -103002112 + (TA)n Simple_repeat Simple_repeat 1 44 0 228 192 0 39 chr4 99326381 99326433 -103001914 + (TTCA)n Simple_repeat Simple_repeat 2 51 0 418 288 101 118 chr4 99326436 99326860 -103001487 - L2 LINE L2 -42 3230 2814 1852 84 8 0 chr4 99327394 99327631 -103000716 + AluSp SINE Alu 60 298 -15 24 0 0 0 chr4 99327777 99327801 -103000546 + AT_rich Low_complexity Low_complexity 1 24 0 277 356 0 0 chr4 99328317 99328404 -102999943 - MIR3 SINE MIR -3 205 119 365 239 128 26 chr4 99329076 99329310 -102999037 - L1ME4a LINE L1 0 6121 5864 241 321 0 0 chr4 99329402 99329455 -102998892 + L2 LINE L2 3205 3257 -15 21 0 0 0 chr4 99330484 99330505 -102997842 + AT_rich Low_complexity Low_complexity 1 21 0 203 51 26 51 chr4 99330628 99330667 -102997680 + (TTTTA)n Simple_repeat Simple_repeat 4 41 0 595 354 62 21 chr4 99331704 99331944 -102996403 - MIR SINE MIR -1 261 12 446 321 34 87 chr4 99332071 99332118 -102996229 - MIR SINE MIR 0 262 214 2163 96 0 55 chr4 99332118 99332430 -102995917 - AluY SINE Alu -16 295 1 446 321 34 87 chr4 99332430 99332511 -102995836 - MIR SINE MIR -48 214 130 3502 93 10 2 chr4 99332511 99333015 -102995332 - L1PB1 LINE L1 -1 6150 5643 446 321 34 87 chr4 99333015 99333150 -102995197 - MIR SINE MIR -132 130 12 346 212 0 81 chr4 99333134 99333233 -102995114 - L2 LINE L2 0 3313 3223 * 226 239 33 33 chr4 99333245 99333337 -102995010 + L1ME4a LINE L1 5963 6054 -67 1998 153 79 14 chr4 99333745 99334111 -102994236 + MLT1B LTR MaLR 1 390 0 803 269 14 72 chr4 99334380 99334659 -102993688 + L2 LINE L2 1141 1403 -1911 4000 220 25 18 chr4 99334671 99335886 -102992461 + L1MEc LINE L1 2173 3355 -2860 1901 122 72 0 chr4 99335909 99336188 -102992159 - AluSx SINE Alu -13 299 1 1491 201 139 39 chr4 99336192 99336550 -102991797 - MLT1E1 LTR MaLR -71 583 166 2305 115 0 6 chr4 99336550 99336864 -102991483 - AluSx SINE Alu 0 312 1 1491 201 139 39 chr4 99336864 99336973 -102991374 - MLT1E1 LTR MaLR -488 166 69 490 306 61 50 chr4 99336973 99337270 -102991077 + L2 LINE L2 3014 3313 0 221 283 85 38 chr4 99338140 99338246 -102990101 + MIR SINE MIR 81 191 -71 22 0 0 0 chr4 99340313 99340335 -102988012 + AT_rich Low_complexity Low_complexity 1 22 0 271 334 79 46 chr4 99340744 99340987 -102987360 + MIR3 SINE MIR 3 257 -5 1207 112 0 0 chr4 99341198 99341376 -102986971 + L1MB1 LINE L1 5990 6167 -1 250 255 57 19 chr4 99343651 99343808 -102984539 - L1ME4a LINE L1 -12 6109 5947 197 128 50 57 chr4 99344115 99344216 -102984131 + (TTATA)n Simple_repeat Simple_repeat 2 103 -38 2489 75 0 0 chr4 99344216 99344522 -102983825 - AluY SINE Alu -5 306 1 197 128 50 57 chr4 99344522 99344561 -102983786 + (TTATA)n Simple_repeat Simple_repeat 103 141 0 2018 111 38 0 chr4 99345296 99345584 -102982763 - AluSp SINE Alu -14 299 1 284 62 0 21 chr4 99346478 99346526 -102981821 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 949 313 80 61 chr4 99346743 99347074 -102981273 + L2 LINE L2 2371 2694 -619 456 19 0 0 chr4 99347074 99347127 -102981220 + (TG)n Simple_repeat Simple_repeat 2 54 0 2383 63 0 3 chr4 99347131 99347415 -102980932 - AluY SINE Alu -28 283 1 949 313 80 61 chr4 99347415 99347488 -102980859 + L2 LINE L2 2696 2766 -547 2223 91 3 7 chr4 99347488 99347785 -102980562 - AluSx SINE Alu -16 296 1 949 313 80 61 chr4 99347785 99348292 -102980055 + L2 LINE L2 2766 3310 -3 1394 124 0 47 chr4 99348461 99348695 -102979652 + AluSg/x SINE Alu 84 306 -6 1497 165 36 42 chr4 99348699 99349008 -102979339 + AluJo SINE Alu 1 307 -5 2360 84 7 3 chr4 99349407 99349706 -102978641 - AluSc SINE Alu -9 300 1 22 35 0 0 chr4 99350234 99350263 -102978084 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 99350474 99350503 -102977844 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr4 99351700 99351743 -102976604 + AT_rich Low_complexity Low_complexity 1 43 0 2331 92 0 0 chr4 99352222 99352514 -102975833 + AluSx SINE Alu 1 292 -20 2335 98 3 7 chr4 99352836 99353141 -102975206 + AluSc SINE Alu 1 304 -5 1932 146 33 9 chr4 99354935 99355270 -102973077 - MER2 DNA MER2_type 0 344 2 948 78 124 0 chr4 99356383 99356512 -102971835 - AluY SINE Alu -166 145 1 1929 118 69 0 chr4 99356680 99356969 -102971378 - AluSq SINE Alu -4 309 1 675 137 24 95 chr4 99356974 99357142 -102971205 + MSTB2 LTR MaLR 302 457 0 302 296 76 15 chr4 99357445 99357577 -102970770 - L1M4 LINE L1 -3344 2802 2663 2170 98 0 38 chr4 99357629 99357945 -102970402 - AluSq SINE Alu -9 304 1 774 368 35 45 chr4 99358018 99358129 -102970218 + L2 LINE L2 2265 2376 -938 2329 95 3 0 chr4 99358129 99358434 -102969913 - AluY SINE Alu -5 306 1 774 368 35 45 chr4 99358434 99358857 -102969490 + L2 LINE L2 2376 2794 -520 301 174 76 87 chr4 99358882 99358974 -102969373 - MIR SINE MIR -79 183 93 1425 263 75 10 chr4 99358982 99359491 -102968856 - MLT2E LTR ERVL -17 611 1 279 183 42 56 chr4 99359491 99359562 -102968785 - MIR SINE MIR -167 95 26 367 310 163 47 chr4 99359583 99359970 -102968377 + L2 LINE L2 2804 3235 -37 769 267 77 54 chr4 99360887 99361054 -102967293 - L1M4 LINE L1 -2715 3431 3269 2198 126 0 0 chr4 99361054 99361355 -102966992 - AluSx SINE Alu -11 301 1 769 267 77 54 chr4 99361355 99362241 -102966106 - L1M4 LINE L1 -2877 3269 2354 256 235 73 15 chr4 99362707 99362775 -102965572 - MIR SINE MIR -174 88 17 180 0 0 0 chr4 99363497 99363517 -102964830 + (T)n Simple_repeat Simple_repeat 1 20 0 316 282 0 13 chr4 99364001 99364079 -102964268 + MIR SINE MIR 21 97 -111 2179 133 3 0 chr4 99364257 99364558 -102963789 - AluSq SINE Alu -11 302 1 200 238 0 0 chr4 99367101 99367143 -102961204 + T-rich Low_complexity Low_complexity 1 42 0 265 202 92 55 chr4 99367781 99367890 -102960457 - LTR41 LTR ERVL -7 766 654 233 220 173 60 chr4 99368299 99368467 -102959880 - LTR41 LTR ERVL -585 188 2 221 312 119 0 chr4 99369089 99369198 -102959149 - MIR SINE MIR -89 173 52 21 36 0 0 chr4 99370430 99370458 -102957889 + AT_rich Low_complexity Low_complexity 1 28 0 1081 244 111 60 chr4 99371427 99371693 -102956654 + MER20B DNA MER1_type 56 307 -476 2058 152 0 0 chr4 99371693 99371990 -102956357 - AluSx SINE Alu -15 297 1 1081 244 111 60 chr4 99371990 99372390 -102955957 + MER20B DNA MER1_type 307 756 -27 346 294 25 17 chr4 99372405 99372524 -102955823 - HERV16 LTR ERVL -2482 3003 2884 2216 130 3 3 chr4 99372609 99372916 -102955431 - AluSx SINE Alu -5 307 1 368 247 31 10 chr4 99372988 99373085 -102955262 - HERV16 LTR ERVL -4332 664 566 902 275 72 12 chr4 99373568 99373903 -102954444 - LTR16A LTR ERVL -6 444 90 228 333 13 13 chr4 99374148 99374226 -102954121 + MIR SINE MIR 20 97 -165 723 230 63 67 chr4 99374264 99374399 -102953948 - MIR SINE MIR -12 250 115 2025 154 0 0 chr4 99374399 99374704 -102953643 + AluSx SINE Alu 1 305 -7 723 230 63 67 chr4 99374704 99374807 -102953540 - MIR SINE MIR -147 115 13 493 227 8 1 chr4 99375171 99375305 -102953042 + L1ME1 LINE L1 6040 6332 -2 216 0 0 0 chr4 99376172 99376196 -102952151 + (T)n Simple_repeat Simple_repeat 1 24 0 737 152 8 16 chr4 99377521 99377646 -102950701 - AluJb SINE Alu -15 297 174 2120 223 109 32 chr4 99378176 99378724 -102949623 - L1MC4a LINE L1 -1 7807 7190 711 204 0 0 chr4 99378724 99378856 -102949491 + FLAM_A SINE Alu 1 132 -1 2120 223 109 32 chr4 99378856 99379021 -102949326 - L1MC4a LINE L1 -618 7190 7039 2320 121 0 0 chr4 99379022 99379329 -102949018 + AluSx SINE Alu 1 307 -5 781 171 31 0 chr4 99379343 99379472 -102948875 + AluJ SINE Alu 1 133 -169 224 182 0 18 chr4 99379478 99379533 -102948814 + G-rich Low_complexity Low_complexity 2 55 0 1091 147 0 6 chr4 99379539 99379709 -102948638 + AluJ SINE Alu 138 306 -6 2164 92 10 0 chr4 99379932 99380224 -102948123 + AluSg SINE Alu 1 295 -15 183 362 67 0 chr4 99380819 99380924 -102947423 + MIR SINE MIR 136 247 -15 283 289 72 10 chr4 99380983 99381080 -102947267 + MIR3 SINE MIR 102 204 -4 4089 15 2 0 chr4 99381239 99381708 -102946639 - L1PA2 LINE L1 -4 6151 5682 318 50 0 0 chr4 99382348 99382388 -102945959 + (TG)n Simple_repeat Simple_repeat 2 41 0 433 348 44 19 chr4 99382738 99383054 -102945293 + L1MEd LINE L1 450 773 -5346 28 0 0 0 chr4 99383234 99383262 -102945085 + AT_rich Low_complexity Low_complexity 1 28 0 800 268 78 8 chr4 99383275 99383518 -102944829 - MLT1F LTR MaLR -113 429 170 198 0 0 0 chr4 99383538 99383560 -102944787 + (T)n Simple_repeat Simple_repeat 1 22 0 315 298 0 29 chr4 99383560 99383664 -102944683 - MLT1F1 LTR MaLR -401 166 66 1748 81 8 16 chr4 99383664 99383912 -102944435 + AluSc SINE Alu 1 246 -63 489 62 0 0 chr4 99383939 99384003 -102944344 - Alu SINE Alu -15 297 234 327 169 0 15 chr4 99384005 99384070 -102944277 - MLT1F1 LTR MaLR -502 65 2 311 291 16 44 chr4 99384080 99384262 -102944085 - L1ME LINE L1 -466 5655 5479 608 298 6 28 chr4 99384264 99384445 -102943902 - MER91A DNA MER1_type -18 178 2 25 51 0 0 chr4 99384574 99384613 -102943734 + AT_rich Low_complexity Low_complexity 1 39 0 253 176 39 0 chr4 99387216 99387267 -102941080 + L2 LINE L2 3216 3268 -4 265 214 98 89 chr4 99387535 99387647 -102940700 + MER91C DNA MER1_type 1 113 -27 200 182 0 0 chr4 99388075 99388108 -102940239 + (TGAG)n Simple_repeat Simple_repeat 1 33 0 750 85 55 12 chr4 99388758 99388922 -102939425 + CT-rich Low_complexity Low_complexity 2 172 0 3984 163 89 5 chr4 99389224 99389986 -102938361 + LTR1B LTR ERV1 1 826 0 562 284 38 56 chr4 99390099 99390472 -102937875 + MLT1I LTR MaLR 40 405 -4 206 407 41 35 chr4 99390629 99390774 -102937573 + L2 LINE L2 3125 3270 -2 1513 129 133 15 chr4 99391030 99391294 -102937053 - AluSc SINE Alu -14 295 1 319 255 64 11 chr4 99391379 99391473 -102936874 - L2 LINE L2 -1 3312 3214 264 326 43 43 chr4 99391699 99391883 -102936464 + MIR3 SINE MIR 2 185 -23 2279 117 0 13 chr4 99391932 99392248 -102936099 - AluSx SINE Alu 0 312 1 569 216 70 42 chr4 99392251 99392464 -102935883 - L1PB4 LINE L1 -2 6154 5936 228 67 0 0 chr4 99393583 99393613 -102934734 + (TC)n Simple_repeat Simple_repeat 1 30 0 333 0 0 0 chr4 99393888 99393925 -102934422 + (CA)n Simple_repeat Simple_repeat 1 37 0 424 263 30 23 chr4 99394293 99394426 -102933921 - L2 LINE L2 0 3313 3180 372 244 180 23 chr4 99394752 99394959 -102933388 - L2 LINE L2 -297 3016 2764 2269 90 0 0 chr4 99395407 99395697 -102932650 - AluSg SINE Alu -16 294 5 1490 167 93 4 chr4 99397510 99397780 -102930567 - AluJo SINE Alu -18 294 1 203 362 95 9 chr4 99397785 99397901 -102930446 - MIR SINE MIR -117 145 20 226 0 0 0 chr4 99397901 99397927 -102930420 + L1PA16 LINE L1 5912 5937 -229 2117 101 3 11 chr4 99397927 99398268 -102930079 + AluSx SINE Alu 1 339 0 1147 165 30 13 chr4 99398268 99398504 -102929843 + L1PA16 LINE L1 5924 6163 -3 2501 82 0 0 chr4 99398904 99399210 -102929137 - AluSq SINE Alu -7 306 1 2123 111 3 39 chr4 99399277 99399583 -102928764 - AluSx SINE Alu -17 295 1 253 311 57 19 chr4 99399891 99399997 -102928350 - MIR3 SINE MIR -18 190 81 2133 109 26 3 chr4 99400119 99400421 -102927926 - AluSc SINE Alu 0 309 1 216 174 44 35 chr4 99401883 99401953 -102926394 - MIR SINE MIR -71 137 61 341 313 20 53 chr4 99402083 99402233 -102926114 + MIR SINE MIR 28 172 -90 283 181 0 42 chr4 99402439 99402511 -102925836 + LTR30 LTR ERV1 552 620 -102 207 0 0 0 chr4 99402524 99402547 -102925800 + (A)n Simple_repeat Simple_repeat 1 23 0 1003 165 24 53 chr4 99402547 99402753 -102925594 - AluJo SINE Alu -31 281 82 2003 108 0 89 chr4 99404017 99404341 -102924006 - AluSx SINE Alu -17 295 1 311 265 59 53 chr4 99404349 99404519 -102923828 + L1M4 LINE L1 4770 4940 -1206 2156 101 10 7 chr4 99404833 99405131 -102923216 + AluSq SINE Alu 1 299 -14 234 220 17 0 chr4 99405131 99405190 -102923157 + L1M4 LINE L1 5195 5254 -892 655 157 37 0 chr4 99405286 99405394 -102922953 - FRAM SINE Alu -25 151 40 620 252 31 19 chr4 99405875 99406034 -102922313 - MIR SINE MIR -29 233 73 247 149 43 0 chr4 99406138 99406185 -102922162 + MADE1 DNA Mariner 31 79 -1 1892 139 64 13 chr4 99406344 99406719 -102921628 + Tigger2 DNA MER2_type 1 394 -2324 206 323 31 0 chr4 99406721 99406786 -102921561 - MIR SINE MIR -123 139 73 2023 178 22 3 chr4 99406900 99407260 -102921087 + Tigger2 DNA MER2_type 391 757 -1961 975 160 98 10 chr4 99407310 99407504 -102920843 + Tigger2 DNA MER2_type 2461 2671 -47 5729 62 37 3 chr4 99408323 99409077 -102919270 + LTR17 LTR ERV1 1 780 0 2162 116 7 0 chr4 99409208 99409502 -102918845 - AluSq SINE Alu -15 298 3 1957 177 64 20 chr4 99409691 99410081 -102918266 + MLT2D LTR ERVL 1 407 -7 2374 79 3 0 chr4 99410144 99410448 -102917899 - AluY SINE Alu -6 305 1 22 0 0 0 chr4 99412699 99412721 -102915626 + AT_rich Low_complexity Low_complexity 1 22 0 343 356 137 12 chr4 99413049 99413507 -102914840 - L2 LINE L2 -182 3090 2572 531 178 89 0 chr4 99413594 99413695 -102914652 + FLAM_A SINE Alu 1 110 -32 631 268 82 8 chr4 99414420 99414663 -102913684 - MIR SINE MIR 0 262 2 2163 122 0 7 chr4 99414683 99414987 -102913360 - AluSx SINE Alu -10 302 1 298 275 107 54 chr4 99415372 99415521 -102912826 + L3 LINE CR1 1412 1568 -9 29 0 0 0 chr4 99415568 99415597 -102912750 + AT_rich Low_complexity Low_complexity 1 29 0 1982 159 0 0 chr4 99415678 99415974 -102912373 - AluSx SINE Alu -16 296 1 27 29 0 0 chr4 99415976 99416010 -102912337 + AT_rich Low_complexity Low_complexity 1 34 0 1403 158 37 26 chr4 99416305 99416577 -102911770 + AluJo SINE Alu 37 311 -1 2384 82 0 10 chr4 99416577 99416882 -102911465 + AluY SINE Alu 1 302 -9 2503 77 0 0 chr4 99418496 99418809 -102909538 - AluSq SINE Alu 0 313 1 222 288 0 45 chr4 99418818 99418884 -102909463 + L2 LINE L2 3245 3307 -6 31 0 0 0 chr4 99419047 99419078 -102909269 + AT_rich Low_complexity Low_complexity 1 31 0 1795 122 83 0 chr4 99419349 99419627 -102908720 + AluSx SINE Alu 1 301 -11 633 243 143 0 chr4 99419974 99420163 -102908184 - MIR SINE MIR 0 262 47 2176 93 7 4 chr4 99420743 99421023 -102907324 - AluSx SINE Alu -29 283 3 1535 87 5 0 chr4 99421026 99421245 -102907102 - L1PA13 LINE L1 -1 6162 5943 1593 168 9 35 chr4 99421773 99421939 -102906408 - L1MA8 LINE L1 -3 6288 6134 2367 89 0 0 chr4 99421939 99422230 -102906117 - AluSc SINE Alu -18 291 1 1593 168 9 35 chr4 99422230 99422403 -102905944 - L1MA8 LINE L1 -157 6134 5958 2870 165 32 22 chr4 99422403 99423254 -102905093 - L1MA8 LINE L1 -618 5673 4821 23 0 0 0 chr4 99424584 99424607 -102903740 + AT_rich Low_complexity Low_complexity 1 23 0 2026 151 3 0 chr4 99424690 99424995 -102903352 + AluSq SINE Alu 1 306 -7 325 336 25 72 chr4 99426041 99426359 -102901988 + L2 LINE L2 2967 3269 -3 192 299 49 69 chr4 99426449 99426593 -102901754 - MIR3 SINE MIR -10 198 58 459 0 0 0 chr4 99426951 99427002 -102901345 + (TG)n Simple_repeat Simple_repeat 2 52 0 746 270 198 26 chr4 99427699 99428324 -102900023 - L2 LINE L2 -3 3310 2575 294 222 32 0 chr4 99428870 99428933 -102899414 + L2 LINE L2 3195 3259 -13 567 305 140 7 chr4 99429674 99429959 -102898388 + LTR33 LTR ERVL 1 323 -198 211 133 0 0 chr4 99430375 99430405 -102897942 - L2 LINE L2 -42 3230 3201 853 227 76 13 chr4 99431398 99431623 -102896724 + MIR SINE MIR 2 240 -22 33 0 0 0 chr4 99432199 99432232 -102896115 + AT_rich Low_complexity Low_complexity 1 33 0 181 299 181 8 chr4 99432457 99432584 -102895763 + L3 LINE CR1 1403 1551 -26 24 0 0 0 chr4 99433447 99433471 -102894876 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr4 99433898 99433918 -102894429 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2344 88 3 0 chr4 99434866 99435163 -102893184 + AluSq SINE Alu 1 298 -15 180 0 0 0 chr4 99436416 99436436 -102891911 + (A)n Simple_repeat Simple_repeat 1 20 0 222 177 0 65 chr4 99436740 99436802 -102891545 - MIR SINE MIR -102 160 103 23 33 0 0 chr4 99438016 99438046 -102890301 + AT_rich Low_complexity Low_complexity 1 30 0 365 235 169 9 chr4 99440595 99440757 -102887590 + MIR SINE MIR 28 262 0 2269 101 3 0 chr4 99441336 99441644 -102886703 + AluY SINE Alu 1 309 -2 322 260 62 34 chr4 99442295 99442441 -102885906 - L1ME4a LINE L1 -9 6112 5963 252 381 62 0 chr4 99443095 99443255 -102885092 - MIR3 SINE MIR -20 188 19 2385 88 0 0 chr4 99443274 99443568 -102884779 + AluSq SINE Alu 1 294 -19 667 268 125 60 chr4 99443835 99444943 -102883404 - L1ME4a LINE L1 -227 5943 4757 529 246 75 96 chr4 99444930 99445082 -102883265 - L1ME4a LINE L1 -2001 4145 3991 * 2162 116 0 10 chr4 99445082 99445384 -102882963 + AluSx SINE Alu 4 302 -10 529 246 75 96 chr4 99445384 99445671 -102882676 - L1ME4a LINE L1 -2155 3991 3715 3529 204 18 21 chr4 99445694 99446214 -102882133 - L1MB7 LINE L1 -171 6824 6304 2473 73 0 0 chr4 99446214 99446516 -102881831 - AluY SINE Alu -9 302 1 3529 204 18 21 chr4 99446516 99446939 -102881408 - L1MB7 LINE L1 -691 6304 5882 2241 94 10 7 chr4 99446939 99447238 -102881109 - AluSg SINE Alu -10 300 1 3529 204 18 21 chr4 99447238 99447266 -102881081 - L1MB7 LINE L1 -1113 5882 5855 * 7534 210 51 34 chr4 99447262 99447866 -102880481 - L1MB7 LINE L1 -4726 2233 1640 1715 165 4 4 chr4 99447866 99448133 -102880214 - AluJb SINE Alu -45 267 1 7534 210 51 34 chr4 99448133 99449736 -102878611 - L1MB7 LINE L1 -5319 1640 8 813 163 0 15 chr4 99450050 99450185 -102878162 - FLAM_C SINE Alu 0 133 1 267 378 49 22 chr4 99451160 99451427 -102876920 + MERVL LTR ERVL 362 635 -4361 1428 199 23 52 chr4 99451898 99452058 -102876289 - AluJo SINE Alu -14 298 135 210 37 0 0 chr4 99452058 99452085 -102876262 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2251 80 0 21 chr4 99452085 99452372 -102875975 - AluY SINE Alu -30 281 1 1428 199 23 52 chr4 99452372 99452517 -102875830 - AluJo SINE Alu -175 137 1 236 299 30 0 chr4 99452830 99452897 -102875450 + MER39 LTR ERV1 1 69 -638 816 208 71 113 chr4 99452901 99453321 -102875026 + MER39 LTR ERV1 301 579 -6 898 319 69 40 chr4 99453334 99454140 -102874207 + MERVL LTR ERVL 4456 5329 -325 4203 115 53 3 chr4 99454662 99455289 -102873058 - HSMAR1 DNA Mariner -629 658 1 2437 149 25 30 chr4 99455339 99455775 -102872572 + Tigger2a DNA MER2_type 1 434 0 239 31 0 0 chr4 99456254 99456286 -102872061 - L1MC2 LINE L1 -16 6328 6297 2170 112 7 10 chr4 99456510 99456814 -102871533 - AluSx SINE Alu -9 303 1 22 80 0 0 chr4 99457077 99457127 -102871220 + AT_rich Low_complexity Low_complexity 1 50 0 210 71 0 0 chr4 99458000 99458028 -102870319 + (CA)n Simple_repeat Simple_repeat 2 29 0 13825 27 0 0 chr4 99458545 99460945 -102867402 - L1PA3 LINE L1 0 6155 3756 2186 98 4 0 chr4 99461005 99461282 -102867065 - AluSx SINE Alu -24 288 11 2123 128 0 10 chr4 99461489 99461793 -102866554 - AluSx SINE Alu -11 301 1 2577 88 11 6 chr4 99462506 99462859 -102865488 - THE1A LTR MaLR 0 355 1 217 360 0 10 chr4 99463250 99463350 -102864997 - MER5B DNA MER1_type -78 100 2 301 333 40 10 chr4 99463629 99463728 -102864619 - MIR SINE MIR -146 116 15 2210 94 3 7 chr4 99464832 99465130 -102863217 - AluSc SINE Alu -12 297 1 2141 136 3 0 chr4 99465210 99465518 -102862829 - AluSx SINE Alu -3 309 1 180 0 0 0 chr4 99465976 99465996 -102862351 + (T)n Simple_repeat Simple_repeat 1 20 0 258 288 12 43 chr4 99466106 99466258 -102862089 + MIR SINE MIR 44 143 -65 184 311 0 0 chr4 99466500 99466561 -102861786 - L2 LINE L2 -217 3055 2995 252 318 68 62 chr4 99467060 99467236 -102861111 - MIR SINE MIR -34 228 52 2438 85 0 0 chr4 99469398 99469703 -102858644 - AluY SINE Alu -6 305 1 265 250 0 60 chr4 99469853 99469937 -102858410 - MER103 DNA DNA -47 119 41 180 0 0 0 chr4 99470116 99470136 -102858211 + (T)n Simple_repeat Simple_repeat 1 20 0 231 283 61 30 chr4 99471986 99472085 -102856262 + MIR SINE MIR 124 225 -37 739 193 19 0 chr4 99472232 99472393 -102855954 + MER53 DNA DNA 23 186 -3 25 65 0 0 chr4 99472453 99472499 -102855848 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr4 99472524 99472548 -102855799 + AT_rich Low_complexity Low_complexity 1 24 0 1671 176 11 4 chr4 99472629 99472907 -102855440 - AluSx SINE Alu -20 292 13 1893 143 0 11 chr4 99473221 99473508 -102854839 - AluSx SINE Alu -22 290 7 304 313 38 19 chr4 99473929 99474140 -102854207 - L1ME LINE L1 -303 5818 5604 2145 118 0 0 chr4 99474301 99474589 -102853758 + AluSg SINE Alu 1 288 -22 201 138 0 0 chr4 99476422 99476451 -102851896 + (TG)n Simple_repeat Simple_repeat 2 30 0 799 271 84 40 chr4 99476632 99477005 -102851342 - MLT1J2 LTR MaLR -22 424 51 219 233 0 0 chr4 99477635 99477678 -102850669 - L2 LINE L2 -2 3311 3269 688 203 46 0 chr4 99582232 99582385 -102745962 - MER5B DNA MER1_type -18 160 1 1921 148 17 7 chr4 99583606 99583904 -102744443 + AluJo SINE Alu 1 301 -11 624 314 78 15 chr4 99584870 99585141 -102743206 - L3b LINE CR1 -176 1407 1120 1535 172 10 17 chr4 99586445 99586735 -102741612 + AluSx SINE Alu 1 288 -24 202 300 14 14 chr4 99588476 99588546 -102739801 + GA-rich Low_complexity Low_complexity 2 71 0 238 248 159 0 chr4 99588569 99588714 -102739633 + L1MEd LINE L1 715 882 -5237 497 152 133 57 chr4 99589173 99589292 -102739055 - MLT1E2 LTR MaLR -444 182 47 1923 160 0 3 chr4 99589292 99589586 -102738761 + AluJb SINE Alu 3 295 -17 497 152 133 57 chr4 99589586 99589624 -102738723 - MLT1E2 LTR MaLR -579 47 13 27 73 0 0 chr4 99589624 99589679 -102738668 + AT_rich Low_complexity Low_complexity 1 55 0 356 40 20 0 chr4 99590394 99590444 -102737903 + (CA)n Simple_repeat Simple_repeat 2 52 0 453 201 151 78 chr4 99590865 99591044 -102737303 + MIR SINE MIR 36 227 -35 305 254 0 0 chr4 99591042 99591097 -102737250 - MIR SINE MIR -197 65 11 * 181 276 123 41 chr4 99591193 99591363 -102736984 - L2 LINE L2 -12 3301 3118 513 331 30 0 chr4 99595297 99595463 -102732884 - MIR3 SINE MIR -35 173 3 6700 25 6 8 chr4 99598623 99599460 -102728887 - L1PA3 LINE L1 0 6155 5321 3442 34 0 0 chr4 99599461 99599904 -102728443 + L1PA3 LINE L1 4873 5315 -831 838 51 0 8 chr4 99600731 99600848 -102727499 + L1PA4 LINE L1 6039 6154 -1 2076 117 3 13 chr4 99601270 99601568 -102726779 - AluSx SINE Alu -9 303 9 185 259 74 37 chr4 99601814 99601895 -102726452 + L2 LINE L2 2312 2395 -919 341 169 59 37 chr4 99602920 99603056 -102725291 + (TATAA)n Simple_repeat Simple_repeat 2 140 0 234 285 106 19 chr4 99604352 99604469 -102723878 - MIR SINE MIR -63 145 22 6828 53 12 12 chr4 99604522 99605121 -102723226 + L1PA7 LINE L1 4883 5481 -673 2499 80 3 3 chr4 99605121 99605433 -102722914 + AluSq SINE Alu 1 312 -1 6828 53 12 12 chr4 99605433 99606099 -102722248 + L1PA7 LINE L1 5480 6152 -2 308 295 63 38 chr4 99606580 99606748 -102721599 + MIR SINE MIR 10 193 -15 496 307 18 24 chr4 99607273 99607439 -102720908 - MER91B DNA MER1_type -6 184 20 206 333 77 0 chr4 99607487 99607565 -102720782 + MIR3 SINE MIR 83 166 -42 21 36 0 0 chr4 99607743 99607771 -102720576 + AT_rich Low_complexity Low_complexity 1 28 0 1951 131 10 35 chr4 99607779 99608092 -102720255 + AluJo SINE Alu 1 305 -7 318 289 10 10 chr4 99608307 99608404 -102719943 - MER20B DNA MER1_type -624 159 63 501 236 151 0 chr4 99608801 99608986 -102719361 - MIR SINE MIR -12 250 39 47 0 0 0 chr4 99609570 99609617 -102718730 + AT_rich Low_complexity Low_complexity 1 47 0 28 0 0 0 chr4 99609627 99609655 -102718692 + AT_rich Low_complexity Low_complexity 1 28 0 340 288 208 57 chr4 99609762 99609875 -102718472 + L2 LINE L2 2651 2746 -567 2022 123 0 0 chr4 99609875 99610152 -102718195 + AluSx SINE Alu 1 277 -35 340 288 208 57 chr4 99610152 99610598 -102717749 + L2 LINE L2 2746 3310 -3 270 0 0 0 chr4 99610598 99610628 -102717719 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 1894 149 7 3 chr4 99610930 99611231 -102717116 - AluSx SINE Alu -10 302 1 317 194 0 30 chr4 99615318 99615385 -102712962 + L2 LINE L2 3182 3246 -67 309 339 8 23 chr4 99617352 99617482 -102710865 - L1ME4a LINE L1 -264 5857 5730 772 201 41 6 chr4 99618230 99618399 -102709948 + MER5A DNA MER1_type 15 189 0 369 291 90 36 chr4 99621133 99621315 -102707032 - MIR SINE MIR -62 146 2 181 231 19 19 chr4 99622472 99622524 -102705823 - L2 LINE L2 -2910 404 353 297 319 17 17 chr4 99624226 99624345 -102704002 + MIR SINE MIR 72 190 -72 1379 259 22 14 chr4 99625872 99626235 -102702112 - LTR40b LTR ERVL -7 455 90 739 317 100 85 chr4 99626427 99627541 -102700806 + L3 LINE CR1 444 1573 -4 372 147 21 32 chr4 99628870 99628941 -102699406 + (TA)n Simple_repeat Simple_repeat 1 72 -22 2221 102 0 0 chr4 99628941 99629226 -102699121 + AluSg SINE Alu 11 295 -15 372 147 21 32 chr4 99629226 99629249 -102699098 + (TA)n Simple_repeat Simple_repeat 72 94 0 235 311 107 39 chr4 99630444 99630547 -102697800 - L2 LINE L2 -1 3271 3162 711 244 37 81 chr4 99630625 99630896 -102697451 + MER102a DNA MER1_type 72 330 0 1604 177 22 0 chr4 99631466 99631737 -102696610 + AluSx SINE Alu 1 277 -35 197 32 0 32 chr4 99631743 99631774 -102696573 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 207 292 112 68 chr4 99633144 99633305 -102695042 - L2 LINE L2 -181 3091 2924 2343 91 0 3 chr4 99633326 99633623 -102694724 + AluY SINE Alu 1 296 -15 193 323 48 16 chr4 99633686 99633810 -102694537 - L2 LINE L2 -509 2805 2678 1624 166 75 66 chr4 99634025 99634387 -102693960 - MLT1A1 LTR MaLR 0 365 1 722 261 80 9 chr4 99634588 99634814 -102693533 - MIR SINE MIR 0 262 21 396 306 70 27 chr4 99635096 99635282 -102693065 - L2 LINE L2 -639 2675 2482 23 68 0 0 chr4 99635586 99635630 -102692717 + AT_rich Low_complexity Low_complexity 1 44 0 476 291 73 0 chr4 99636155 99636320 -102692027 - MER5B DNA MER1_type 0 178 2 245 370 7 14 chr4 99636753 99636891 -102691456 + L2 LINE L2 768 904 -2410 2297 92 0 10 chr4 99636939 99637244 -102691103 + AluSx SINE Alu 3 304 -8 399 121 57 7 chr4 99638071 99638212 -102690135 + (TA)n Simple_repeat Simple_repeat 2 149 0 522 99 74 0 chr4 99638229 99638391 -102689956 + (TA)n Simple_repeat Simple_repeat 2 175 0 1726 232 52 52 chr4 99640259 99640764 -102687583 + MLT1D LTR MaLR 1 505 0 261 284 14 0 chr4 99642135 99642209 -102686138 + GA-rich Low_complexity Low_complexity 2 76 0 410 221 0 58 chr4 99642347 99642537 -102685810 + GA-rich Low_complexity Low_complexity 1 179 0 437 210 8 47 chr4 99642556 99642924 -102685423 + GA-rich Low_complexity Low_complexity 1 353 0 301 360 6 17 chr4 99642930 99643105 -102685242 + G-rich Low_complexity Low_complexity 5 177 0 * 434 218 9 59 chr4 99642978 99643534 -102684813 + GA-rich Low_complexity Low_complexity 1 528 0 1489 173 34 8 chr4 99644483 99644605 -102683742 + AluJo SINE Alu 1 118 -194 7874 40 3 0 chr4 99644605 99645644 -102682703 - L1PA5 LINE L1 -7 6147 5107 1489 173 34 8 chr4 99645644 99645787 -102682560 + AluJo SINE Alu 118 273 -39 210 290 80 74 chr4 99646172 99646334 -102682013 + L2 LINE L2 3107 3269 -3 23 33 0 0 chr4 99647035 99647065 -102681282 + AT_rich Low_complexity Low_complexity 1 30 0 180 39 0 39 chr4 99649665 99649691 -102678656 + L3 LINE CR1 945 969 -608 508 311 77 18 chr4 99651145 99651367 -102676980 - MIR SINE MIR -20 242 8 805 252 51 5 chr4 99651761 99651975 -102676372 + MIR SINE MIR 5 228 -34 21 0 0 0 chr4 99652383 99652404 -102675943 + AT_rich Low_complexity Low_complexity 1 21 0 381 248 70 51 chr4 99654860 99655017 -102673330 + MIR SINE MIR 93 252 -10 2327 102 3 0 chr4 99655334 99655637 -102672710 - AluSx SINE Alu -5 307 4 24 0 0 0 chr4 99655757 99655781 -102672566 + AT_rich Low_complexity Low_complexity 1 24 0 1590 174 0 29 chr4 99657093 99657369 -102670978 + AluJo SINE Alu 1 268 -44 25174 37 18 2 chr4 99657845 99663857 -102664490 + L1PA5 LINE L1 14 6154 0 536 325 30 0 chr4 99667021 99667187 -102661160 + MIR3 SINE MIR 3 173 -35 695 196 46 0 chr4 99672745 99672898 -102655449 - MER5B DNA MER1_type -18 160 1 1926 155 16 7 chr4 99674119 99674458 -102653889 + AluJo SINE Alu 1 468 -72 817 81 8 8 chr4 99674458 99674582 -102653765 + (GGGA)n Simple_repeat Simple_repeat 1 124 0 1926 155 16 7 chr4 99674582 99674656 -102653691 + AluJo SINE Alu 468 540 0 194 264 198 56 chr4 99674665 99674862 -102653485 - MIR SINE MIR -9 253 29 181 377 26 0 chr4 99675140 99675217 -102653130 + L2 LINE L2 422 500 -2814 235 62 83 0 chr4 99675579 99675627 -102652720 + T-rich Low_complexity Low_complexity 4 55 0 216 331 81 40 chr4 99675662 99675810 -102652537 + L2 LINE L2 1045 1198 -2116 292 327 18 18 chr4 99675841 99675954 -102652393 - MIR SINE MIR -27 235 123 231 88 0 0 chr4 99676052 99676086 -102652261 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 272 252 54 45 chr4 99676179 99676290 -102652057 - MIR SINE MIR -146 116 5 467 330 63 11 chr4 99676298 99676568 -102651779 + L2 LINE L2 1229 1512 -1802 297 0 0 0 chr4 99676583 99676616 -102651731 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 234 156 0 0 chr4 99677440 99677485 -102650862 + (TA)n Simple_repeat Simple_repeat 1 45 0 288 0 0 0 chr4 99679582 99679614 -102648733 + (A)n Simple_repeat Simple_repeat 1 32 0 1779 163 33 3 chr4 99681222 99681523 -102646824 - AluSx SINE Alu -2 310 1 219 69 0 0 chr4 99682458 99682487 -102645860 + (TTA)n Simple_repeat Simple_repeat 2 30 0 550 302 26 5 chr4 99684115 99684307 -102644040 - MIR SINE MIR -15 247 52 569 211 0 23 chr4 99684619 99684747 -102643600 - FLAM_C SINE Alu -3 140 16 408 283 133 0 chr4 99685107 99685287 -102643060 - MIR SINE MIR 0 262 59 713 171 0 23 chr4 99686550 99686679 -102641668 + FLAM_A SINE Alu 11 136 -6 199 235 29 44 chr4 99687256 99687324 -102641023 + MIR SINE MIR 178 244 -18 183 193 70 18 chr4 99690421 99690478 -102637869 + L2 LINE L2 99 158 -3156 22 0 0 0 chr4 99690589 99690611 -102637736 + AT_rich Low_complexity Low_complexity 1 22 0 1988 140 0 14 chr4 99690611 99690903 -102637444 + AluJb SINE Alu 1 288 -24 405 118 71 12 chr4 99691748 99691833 -102636514 - MER97b DNA MER1_type? -875 178 89 252 235 0 37 chr4 99692484 99692565 -102635782 + A-rich Low_complexity Low_complexity 3 80 0 251 275 108 17 chr4 99693903 99694023 -102634324 - MIR3 SINE MIR -8 200 70 185 274 36 48 chr4 99694141 99694225 -102634122 - L3 LINE CR1 -7 1570 1488 38294 66 7 13 chr4 99695019 99701211 -102627136 + L1PA5 LINE L1 2 6152 -2 1807 184 7 0 chr4 99701220 99701519 -102626828 + AluJb SINE Alu 1 301 -11 624 314 78 15 chr4 99702485 99702756 -102625591 - L3b LINE CR1 -176 1407 1120 2207 138 3 0 chr4 99704060 99704371 -102623976 + AluSx SINE Alu 1 312 0 251 157 20 0 chr4 99705673 99705724 -102622623 + GA-rich Low_complexity Low_complexity 4 55 0 202 300 14 14 chr4 99706090 99706160 -102622187 + GA-rich Low_complexity Low_complexity 2 71 0 238 248 159 0 chr4 99706183 99706328 -102622019 + L1MEd LINE L1 715 882 -5237 497 152 133 57 chr4 99706787 99706906 -102621441 - MLT1E2 LTR MaLR -444 182 47 1923 160 0 3 chr4 99706906 99707200 -102621147 + AluJb SINE Alu 3 295 -17 497 152 133 57 chr4 99707200 99707238 -102621109 - MLT1E2 LTR MaLR -579 47 13 27 73 0 0 chr4 99707238 99707293 -102621054 + AT_rich Low_complexity Low_complexity 1 55 0 248 53 26 0 chr4 99708007 99708045 -102620302 + (CA)n Simple_repeat Simple_repeat 2 40 0 453 201 151 78 chr4 99708466 99708645 -102619702 + MIR SINE MIR 36 227 -35 305 254 0 0 chr4 99708643 99708698 -102619649 - MIR SINE MIR -197 65 11 * 181 276 123 41 chr4 99708794 99708964 -102619383 - L2 LINE L2 -12 3301 3118 642 122 106 16 chr4 99712606 99712729 -102615618 - L1MA5A LINE L1 -51 6246 6113 1701 163 28 0 chr4 99712740 99713028 -102615319 - AluSx SINE Alu -16 296 1 493 306 42 0 chr4 99713136 99713329 -102615018 - L1ME LINE L1 -392 5729 5529 397 156 23 250 chr4 99713344 99713652 -102614695 - L1MC4 LINE L1 -3 8039 7802 287 175 31 21 chr4 99713653 99713733 -102614614 + L1MA1 LINE L1 6173 6252 -50 1045 188 18 0 chr4 99713764 99713982 -102614365 - L1 LINE L1 -1606 4540 4319 2091 112 3 0 chr4 99713982 99714268 -102614079 + AluSx SINE Alu 1 287 -25 577 174 31 10 chr4 99714276 99714479 -102613868 + GA-rich Low_complexity Low_complexity 1 207 0 1176 163 27 5 chr4 99714492 99714713 -102613634 - L1 LINE L1 -1821 4325 4100 * 2489 144 119 8 chr4 99714711 99715189 -102613158 + L1PA16 LINE L1 5636 6166 0 1530 201 10 20 chr4 99717295 99717588 -102610759 - AluJo SINE Alu -22 290 1 438 319 22 0 chr4 99717717 99717852 -102610495 + MIR SINE MIR 67 204 -58 251 358 109 29 chr4 99717926 99718200 -102610147 + L2 LINE L2 2980 3275 -38 1024 138 12 6 chr4 99718300 99718467 -102609880 + AluJo SINE Alu 127 294 -18 387 0 0 0 chr4 99718624 99718667 -102609680 + (TG)n Simple_repeat Simple_repeat 1 43 0 1673 190 29 29 chr4 99719815 99720162 -102608185 - MER7A DNA MER2_type 0 346 2 270 73 0 0 chr4 99720402 99720443 -102607904 + (TG)n Simple_repeat Simple_repeat 2 42 0 465 278 37 19 chr4 99720717 99720879 -102607468 - MIR SINE MIR -77 185 21 462 310 63 11 chr4 99721166 99721340 -102607007 - MIR SINE MIR -71 191 9 1859 38 0 13 chr4 99725129 99725389 -102602958 + L1PA4 LINE L1 5906 6162 0 692 256 153 4 chr4 99726813 99727094 -102601253 + MER5C DNA MER1_type 2 324 0 247 301 130 14 chr4 99727386 99727532 -102600815 + MIR SINE MIR 94 256 -6 271 283 198 45 chr4 99727694 99727871 -102600476 + L2 LINE L2 1836 2039 -1275 538 276 129 72 chr4 99728346 99729043 -102599304 + L2 LINE L2 2235 2971 -343 212 227 239 0 chr4 99729366 99729454 -102598893 + MIR SINE MIR 96 204 -58 243 0 0 0 chr4 99730152 99730179 -102598168 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 297 323 105 38 chr4 99730991 99731124 -102597223 - MIR SINE MIR -89 173 32 317 296 44 44 chr4 99731357 99731516 -102596831 + MIR SINE MIR 9 167 -95 340 313 8 38 chr4 99732118 99732249 -102596098 - MER5A DNA MER1_type -61 128 2 245 282 129 8 chr4 99732971 99733095 -102595252 + L1ME LINE L1 5735 5873 -248 2727 269 189 42 chr4 99733471 99735388 -102592959 + HAL1 LINE L1 204 2402 -105 192 152 0 0 chr4 99735461 99735494 -102592853 + (TG)n Simple_repeat Simple_repeat 1 33 0 2284 91 0 0 chr4 99736073 99736371 -102591976 + AluY SINE Alu 1 298 -13 287 45 0 0 chr4 99736491 99736535 -102591812 + L1PA3 LINE L1 6112 6155 0 2214 96 0 0 chr4 99737253 99737560 -102590787 + AluSc SINE Alu 1 307 0 211 344 0 0 chr4 99737801 99737862 -102590485 + CT-rich Low_complexity Low_complexity 2 62 0 271 174 30 18 chr4 99737935 99738102 -102590245 + (TA)n Simple_repeat Simple_repeat 2 170 0 202 107 0 89 chr4 99738151 99738207 -102590140 + (TTTAA)n Simple_repeat Simple_repeat 1 51 0 512 176 6 0 chr4 99738207 99738372 -102589975 + (TA)n Simple_repeat Simple_repeat 2 167 0 35 24 0 0 chr4 99738967 99739009 -102589338 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr4 99739195 99739226 -102589121 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 99739810 99739838 -102588509 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chr4 99740034 99740076 -102588271 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr4 99740112 99740143 -102588204 + AT_rich Low_complexity Low_complexity 1 31 0 288 313 199 0 chr4 99740382 99740548 -102587799 + MIR SINE MIR 49 247 -15 321 301 26 20 chr4 99740595 99740748 -102587599 + CT-rich Low_complexity Low_complexity 2 155 0 360 181 0 0 chr4 99743782 99743865 -102584482 + A-rich Low_complexity Low_complexity 1 83 0 22 35 0 0 chr4 99744236 99744265 -102584082 + AT_rich Low_complexity Low_complexity 1 29 0 36 40 0 0 chr4 99744774 99744824 -102583523 + AT_rich Low_complexity Low_complexity 1 50 0 26 0 0 0 chr4 99747057 99747083 -102581264 + AT_rich Low_complexity Low_complexity 1 26 0 1917 169 0 3 chr4 99747328 99747641 -102580706 - AluJb SINE Alu 0 312 1 22 0 0 0 chr4 99747763 99747785 -102580562 + AT_rich Low_complexity Low_complexity 1 22 0 1507 93 4 93 chr4 99747837 99748094 -102580253 + AluSg/x SINE Alu 76 309 -3 258 81 0 0 chr4 99749077 99749114 -102579233 + (CA)n Simple_repeat Simple_repeat 2 38 0 319 223 18 0 chr4 99750707 99750819 -102577528 + (CATATA)n Simple_repeat Simple_repeat 3 116 0 264 207 23 11 chr4 99750828 99750915 -102577432 + (TA)n Simple_repeat Simple_repeat 2 89 0 22 56 0 0 chr4 99751195 99751231 -102577116 + AT_rich Low_complexity Low_complexity 1 36 0 267 220 22 77 chr4 99751947 99752026 -102576321 + MIR3 SINE MIR 119 194 -14 2618 43 0 0 chr4 99752026 99752329 -102576018 - AluY SINE Alu -4 307 5 267 220 22 77 chr4 99752329 99752340 -102576007 + MIR3 SINE MIR 194 204 -4 296 271 161 0 chr4 99752423 99752541 -102575806 + MIR SINE MIR 56 192 -70 272 312 80 34 chr4 99752568 99752754 -102575593 - MIR SINE MIR -56 206 19 2088 194 132 25 chr4 99752757 99752903 -102575444 - Charlie1 DNA MER1_type 0 2761 2632 1702 30 5 0 chr4 99752903 99753106 -102575241 + L1PA3 LINE L1 5951 6154 -1 2088 194 132 25 chr4 99753106 99753566 -102574781 - Charlie1 DNA MER1_type -129 2632 2090 1679 182 156 60 chr4 99753572 99753783 -102574564 - Charlie1 DNA MER1_type -786 1975 1786 2611 102 11 8 chr4 99753783 99754157 -102574190 - THE1C LTR MaLR 0 375 1 1679 182 156 60 chr4 99754157 99754444 -102573903 - Charlie1 DNA MER1_type -975 1786 1429 1970 128 4 0 chr4 99754555 99754829 -102573518 + AluSx SINE Alu 1 275 -37 330 87 0 0 chr4 99754830 99754876 -102573471 + (CATA)n Simple_repeat Simple_repeat 3 48 0 417 333 0 0 chr4 99755664 99755778 -102572569 + L2 LINE L2 3190 3303 -10 1854 173 0 3 chr4 99756037 99756343 -102572004 + AluJb SINE Alu 6 310 -2 632 265 26 48 chr4 99756494 99756683 -102571664 + MIR SINE MIR 72 256 -6 199 269 143 50 chr4 99757640 99757759 -102570588 - MIR SINE MIR -16 246 117 489 209 0 0 chr4 99758449 99758535 -102569812 + MIR SINE MIR 76 161 -101 566 302 69 5 chr4 99760735 99760924 -102567423 - MIR SINE MIR -33 229 29 35 41 0 0 chr4 99762239 99762288 -102566059 + AT_rich Low_complexity Low_complexity 1 49 0 1394 226 66 70 chr4 99762698 99763216 -102565131 + MLT2B1 LTR ERVL 1 516 -4 324 200 0 0 chr4 99763409 99763479 -102564868 + (TA)n Simple_repeat Simple_repeat 2 71 0 440 312 42 89 chr4 99764500 99764949 -102563398 + L2 LINE L2 2261 2688 -626 243 0 0 0 chr4 99764960 99764987 -102563360 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2231 80 4 0 chr4 99765008 99765283 -102563064 - AluSp SINE Alu -37 276 1 919 319 102 9 chr4 99765311 99765772 -102562575 - L2 LINE L2 0 3313 2810 703 266 13 0 chr4 99765797 99765955 -102562392 - L2 LINE L2 -622 2692 2533 556 189 42 0 chr4 99765955 99766050 -102562297 + MER6B DNA MER2_type 2 100 -176 626 164 19 0 chr4 99766126 99766230 -102562117 + MER6B DNA MER2_type 105 210 0 266 248 46 65 chr4 99766245 99766398 -102561949 - LTR16C LTR ERVL -2 489 340 273 286 99 0 chr4 99766780 99766871 -102561476 - L2 LINE L2 -828 2486 2387 274 337 52 47 chr4 99766876 99767196 -102561151 + L2 LINE L2 2715 3034 -238 751 243 57 23 chr4 99768255 99768432 -102559915 - MER5A DNA MER1_type 0 189 7 21 36 0 0 chr4 99769238 99769266 -102559081 + AT_rich Low_complexity Low_complexity 1 28 0 787 188 17 11 chr4 99769626 99769807 -102558540 - L1MB8 LINE L1 -1 6177 5996 2866 195 56 7 chr4 99769809 99770539 -102557808 - L1MB8 LINE L1 -234 5944 5172 1751 189 9 15 chr4 99770539 99770878 -102557469 - MER1B DNA MER1_type 0 337 1 2866 195 56 7 chr4 99770878 99770966 -102557381 - L1MB8 LINE L1 -1006 5172 5090 375 241 97 37 chr4 99771026 99771312 -102557035 - L1P4 LINE L1 -580 5581 5268 368 329 54 7 chr4 99771516 99771665 -102556682 + MIR SINE MIR 7 162 -100 2037 139 124 18 chr4 99772920 99773307 -102555040 - MSTA LTR MaLR 0 428 1 239 369 0 39 chr4 99773391 99773521 -102554826 + MIR SINE MIR 33 157 -105 401 0 20 0 chr4 99773883 99773932 -102554415 + (TG)n Simple_repeat Simple_repeat 2 51 0 2090 77 0 8 chr4 99777586 99777847 -102550500 + AluSc SINE Alu 32 290 -19 361 353 141 27 chr4 99777965 99778285 -102550062 - L2 LINE L2 -31 3241 2858 236 30 30 0 chr4 99778285 99778318 -102550029 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 361 353 141 27 chr4 99778318 99778465 -102549882 - L2 LINE L2 -414 2858 2729 939 230 60 5 chr4 99781526 99781743 -102546604 - MIR SINE MIR -27 235 7 432 0 0 0 chr4 99781776 99781824 -102546523 + (CA)n Simple_repeat Simple_repeat 1 48 0 183 294 0 112 chr4 99781865 99782008 -102546339 + MIR3 SINE MIR 82 208 0 195 372 116 20 chr4 99785398 99785597 -102542750 - L2 LINE L2 -251 3021 2804 342 0 0 0 chr4 99785639 99785677 -102542670 + (A)n Simple_repeat Simple_repeat 1 38 0 1410 195 28 28 chr4 99785684 99785971 -102542376 + AluJo SINE Alu 2 288 -24 5374 119 19 17 chr4 99786425 99787298 -102541049 + L1PA16 LINE L1 5283 6157 -9 237 187 13 40 chr4 99787321 99787396 -102540951 + L1MC3 LINE L1 7025 7097 -688 285 275 0 12 chr4 99787410 99787490 -102540857 + MLT1F1 LTR MaLR 46 124 -443 1971 212 75 29 chr4 99787490 99788051 -102540296 + L1MC3 LINE L1 7199 7785 0 260 327 209 0 chr4 99788545 99788698 -102539649 + MIR SINE MIR 75 259 -3 603 204 0 61 chr4 99788885 99789017 -102539330 + FLAM_A SINE Alu 1 124 -9 497 320 61 76 chr4 99789213 99789721 -102538626 - L2 LINE L2 -5 3267 2750 2950 6 0 0 chr4 99791885 99792203 -102536144 - AluYb8 SINE Alu 0 318 1 2408 146 36 2 chr4 99792472 99792889 -102535458 - Tigger4(Zombi) DNA MER2_type 0 2731 2301 484 147 37 64 chr4 99792883 99792941 -102535406 - Tigger4(Zombi) DNA MER2_type -2625 106 51 * 2389 71 0 7 chr4 99792941 99793236 -102535111 + AluY SINE Alu 1 293 -18 484 147 37 64 chr4 99793236 99793286 -102535061 - Tigger4(Zombi) DNA MER2_type -2680 51 1 279 208 69 0 chr4 99793286 99793358 -102534989 - MIR SINE MIR -65 197 121 22 0 0 0 chr4 99793727 99793749 -102534598 + AT_rich Low_complexity Low_complexity 1 22 0 1526 173 0 8 chr4 99793751 99794000 -102534347 + AluJo SINE Alu 3 249 -63 1071 143 91 19 chr4 99795222 99795432 -102532915 + MER30 DNA MER1_type 1 225 -5 23 0 0 0 chr4 99796430 99796453 -102531894 + AT_rich Low_complexity Low_complexity 1 23 0 934 283 90 39 chr4 99796775 99797282 -102531065 + L2 LINE L2 2777 3304 -9 516 319 70 38 chr4 99797954 99798167 -102530180 + LTR67 LTR ERVL 97 316 -241 4421 119 53 17 chr4 99798208 99798962 -102529385 + L1MA3 LINE L1 5484 6264 -41 5595 167 8 5 chr4 99798962 99800805 -102527542 + L1PB2 LINE L1 4302 6146 -5 367 85 0 0 chr4 99800809 99800868 -102527479 + L1MA3 LINE L1 6247 6305 0 585 313 39 10 chr4 99800890 99801098 -102527249 + LTR67 LTR ERVL 341 554 -3 227 314 114 46 chr4 99801110 99801285 -102527062 + L2 LINE L2 3035 3221 -51 1898 237 102 20 chr4 99801520 99802574 -102525773 + L1MC4 LINE L1 4869 5388 -758 * 2528 157 29 39 chr4 99802214 99802603 -102525744 + L1MB2 LINE L1 5654 6038 -133 1484 180 2 109 chr4 99802603 99802818 -102525529 + MLT1A2 LTR MaLR 5 157 -217 192 40 0 0 chr4 99802818 99802843 -102525504 + (TC)n Simple_repeat Simple_repeat 1 25 0 1484 180 2 109 chr4 99802843 99803039 -102525308 + MLT1A2 LTR MaLR 157 372 -2 2528 157 29 39 chr4 99803039 99803160 -102525187 + L1MB2 LINE L1 6038 6159 -12 813 188 6 55 chr4 99803160 99803341 -102525006 - AluJo SINE Alu -21 291 120 1052 182 12 0 chr4 99803473 99803638 -102524709 + FAM SINE Alu 1 167 -8 6038 30 3 0 chr4 99803908 99804632 -102523715 - L1PA3 LINE L1 -1336 4810 4085 7396 33 0 20 chr4 99804632 99806000 -102522347 + L1PA3 LINE L1 4806 6155 0 194 0 39 0 chr4 99806006 99806032 -102522315 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 29 47 0 0 chr4 99806232 99806275 -102522072 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr4 99807818 99807853 -102520494 + AT_rich Low_complexity Low_complexity 1 35 0 1478 191 18 21 chr4 99808036 99808319 -102520028 + AluJo SINE Alu 1 282 -30 366 175 0 0 chr4 99808338 99808418 -102519929 + G-rich Low_complexity Low_complexity 1 80 0 476 32 0 16 chr4 99808929 99808992 -102519355 + (GAAA)n Simple_repeat Simple_repeat 4 65 0 523 337 81 37 chr4 99809550 99809980 -102518367 + L2 LINE L2 2513 2961 -353 2089 101 47 0 chr4 99809982 99810260 -102518087 - AluSc SINE Alu -18 291 1 306 289 96 6 chr4 99810316 99810482 -102517865 + L2 LINE L2 3095 3275 -38 1679 193 0 22 chr4 99811394 99811710 -102516637 + AluJo SINE Alu 1 309 -3 21 0 0 0 chr4 99812220 99812241 -102516106 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 99812414 99812436 -102515911 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 99812484 99812514 -102515833 + AT_rich Low_complexity Low_complexity 1 30 0 1605 165 6 67 chr4 99814065 99814393 -102513954 + AluJo SINE Alu 1 308 -4 1053 174 18 80 chr4 99814434 99814484 -102513863 - MER20 DNA MER1_type -4 215 163 2325 88 0 3 chr4 99814484 99814778 -102513569 - AluSc SINE Alu -14 295 3 1053 174 18 80 chr4 99814778 99814951 -102513396 - MER20 DNA MER1_type -56 163 6 21 0 0 0 chr4 99815111 99815132 -102513215 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 99816938 99816959 -102511388 + AT_rich Low_complexity Low_complexity 1 21 0 252 65 0 0 chr4 99817041 99817072 -102511275 + U2 snRNA snRNA 1 31 -157 189 268 18 18 chr4 99817550 99817606 -102510741 - MER5A DNA MER1_type -99 90 35 379 299 30 37 chr4 99817658 99817822 -102510525 + MER115 DNA AcHobo 371 533 -160 395 198 12 12 chr4 99818145 99818226 -102510121 + Zaphod DNA AcHobo 2806 2886 -1145 * 761 217 16 11 chr4 99818214 99818398 -102509949 + Zaphod DNA AcHobo 3842 4026 -5 2958 235 62 50 chr4 99818517 99819082 -102509265 - Charlie1a DNA MER1_type -1724 1037 481 2357 82 3 0 chr4 99819082 99819374 -102508973 + AluSc SINE Alu 1 293 -16 1505 173 8 11 chr4 99819384 99819650 -102508697 + AluJo SINE Alu 1 265 -47 2958 235 62 50 chr4 99819650 99820097 -102508250 - Charlie1a DNA MER1_type -2288 473 1 249 283 98 11 chr4 99820930 99821022 -102507325 - L2 LINE L2 0 3313 3214 612 294 81 76 chr4 99822969 99823006 -102505341 + MLT1J LTR MaLR 1 36 -475 2047 156 0 0 chr4 99823006 99823336 -102505011 - AluSx SINE Alu 0 312 1 612 294 81 76 chr4 99823336 99823706 -102504641 + MLT1J LTR MaLR 36 410 -101 1815 110 60 0 chr4 99823707 99823989 -102504358 + L1PA14 LINE L1 5862 6160 -1 479 297 14 7 chr4 99825217 99825355 -102502992 - MIR SINE MIR -123 139 1 973 299 54 24 chr4 99825523 99825985 -102502362 - L1ME3A LINE L1 -249 5921 5446 683 251 0 37 chr4 99826001 99826164 -102502183 - AluJo SINE Alu -19 293 137 255 209 44 22 chr4 99826169 99826260 -102502087 - L1P5 LINE L1 -716 5440 5348 402 315 87 36 chr4 99826334 99826610 -102501737 - L1ME3A LINE L1 -929 5217 4928 30 27 0 0 chr4 99827121 99827158 -102501189 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr4 99827994 99828026 -102500321 + AT_rich Low_complexity Low_complexity 1 32 0 2203 98 7 3 chr4 99828232 99828528 -102499819 + AluSg SINE Alu 1 297 -13 418 293 35 11 chr4 99828528 99828677 -102499670 + MIR SINE MIR 40 191 -62 851 116 16 0 chr4 99828680 99828809 -102499538 - AluJo SINE Alu -171 131 1 1861 110 0 0 chr4 99828834 99829080 -102499267 - AluSg SINE Alu -63 247 2 26 50 0 0 chr4 99829787 99829827 -102498520 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 99830095 99830116 -102498231 + AT_rich Low_complexity Low_complexity 1 21 0 1760 115 0 0 chr4 99831038 99831272 -102497075 + AluSg/x SINE Alu 73 306 -4 364 344 58 7 chr4 99831273 99831427 -102496920 + MIR SINE MIR 26 187 -75 180 111 0 0 chr4 99831431 99831458 -102496889 + (CATATA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr4 99832063 99832084 -102496263 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 99832122 99832159 -102496188 + AT_rich Low_complexity Low_complexity 1 37 0 3843 125 21 5 chr4 99832468 99833090 -102495257 + L1PA16 LINE L1 5526 6157 -9 824 90 8 30 chr4 99833835 99833968 -102494379 + L1PA6 LINE L1 6018 6147 -7 804 148 7 0 chr4 99834533 99834668 -102493679 - AluSc SINE Alu 0 309 174 21 0 0 0 chr4 99835058 99835079 -102493268 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr4 99835614 99835643 -102492704 + (CA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr4 99835670 99835694 -102492653 + AT_rich Low_complexity Low_complexity 1 24 0 2294 105 3 0 chr4 99836393 99836689 -102491658 + AluSp SINE Alu 1 297 -16 24 0 0 0 chr4 99836858 99836882 -102491465 + AT_rich Low_complexity Low_complexity 1 24 0 21 82 0 0 chr4 99839807 99839856 -102488491 + AT_rich Low_complexity Low_complexity 1 49 0 471 317 42 12 chr4 99840050 99840217 -102488130 - MIR3 SINE MIR -21 187 16 921 236 67 35 chr4 99840913 99841279 -102487068 - Charlie2 DNA MER1_type -18 2844 2460 2143 143 0 3 chr4 99841279 99841586 -102486761 - AluSx SINE Alu -6 306 1 921 236 67 35 chr4 99841586 99841652 -102486695 - Charlie2 DNA MER1_type -402 2460 2398 604 259 167 0 chr4 99841650 99841824 -102486523 - Charlie2 DNA MER1_type -2590 272 70 * 1015 137 97 115 chr4 99841827 99841869 -102486478 + L1MC2 LINE L1 5868 5909 -435 1356 163 41 82 chr4 99841869 99842163 -102486184 + AluJo SINE Alu 1 282 -30 1015 137 97 115 chr4 99842163 99842398 -102485949 + L1MC2 LINE L1 5909 6140 -204 441 335 41 16 chr4 99842448 99842642 -102485705 - MIR SINE MIR -27 235 37 265 274 26 98 chr4 99842978 99843131 -102485216 - L2 LINE L2 -913 2401 2260 700 306 118 33 chr4 99843169 99843716 -102484631 + L2 LINE L2 2633 3309 -4 438 154 33 0 chr4 99844012 99844103 -102484244 + L1MB7 LINE L1 6090 6183 -1 937 36 0 0 chr4 99844245 99844391 -102483956 + L1PA4 LINE L1 6030 6175 0 284 246 231 8 chr4 99844402 99844536 -102483811 + MIR SINE MIR 8 171 -91 1124 198 37 21 chr4 99844537 99844692 -102483655 - L1MB8 LINE L1 -344 5834 5683 2223 103 3 13 chr4 99844692 99844992 -102483355 - AluSg SINE Alu -13 297 1 1124 198 37 21 chr4 99844992 99845193 -102483154 - L1MB8 LINE L1 -495 5683 5350 186 103 0 0 chr4 99845310 99845339 -102483008 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 2362 99 0 0 chr4 99845655 99845959 -102482388 - AluSc SINE Alu -5 304 1 21 0 0 0 chr4 99846890 99846911 -102481436 + AT_rich Low_complexity Low_complexity 1 21 0 549 83 70 18 chr4 99847788 99848004 -102480343 + (TA)n Simple_repeat Simple_repeat 1 227 0 2424 56 0 0 chr4 99848004 99848292 -102480055 - AluY SINE Alu -21 290 3 29 28 0 0 chr4 99848295 99848331 -102480016 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr4 99848695 99848715 -102479632 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 260 409 7 0 chr4 99849230 99849367 -102478980 - MIR SINE MIR -114 148 11 315 0 0 0 chr4 99849495 99849530 -102478817 + (CA)n Simple_repeat Simple_repeat 2 36 0 344 276 200 72 chr4 99851093 99851343 -102477004 - L2 LINE L2 -5 3267 2986 900 348 50 5 chr4 99851621 99852021 -102476326 - L2 LINE L2 0 3313 2896 2351 62 26 10 chr4 99852023 99852329 -102476018 - AluY SINE Alu 0 311 1 817 249 6 6 chr4 99852412 99852589 -102475758 + MER5B DNA MER1_type 1 177 -1 204 293 17 0 chr4 99852593 99852651 -102475696 - L2 LINE L2 -517 2797 2739 984 154 6 24 chr4 99853663 99853832 -102474515 + FRAM SINE Alu 1 160 -16 234 191 0 0 chr4 99854015 99854062 -102474285 + (TG)n Simple_repeat Simple_repeat 2 48 0 1092 122 0 0 chr4 99854062 99854210 -102474137 - AluSg/x SINE Alu -32 278 131 2186 204 20 10 chr4 99854263 99854665 -102473682 - MER6 DNA MER2_type -459 406 1 1528 126 43 138 chr4 99855838 99856075 -102472272 + THE1C LTR MaLR 1 184 -191 309 51 0 0 chr4 99856075 99856114 -102472233 + (TG)n Simple_repeat Simple_repeat 1 39 0 1528 126 43 138 chr4 99856114 99856290 -102472057 + THE1C LTR MaLR 184 375 0 640 254 94 60 chr4 99856290 99856861 -102471486 + MLT1F LTR MaLR 24 590 0 306 309 73 26 chr4 99857010 99857201 -102471146 + MLT1G-int LTR MaLR 296 495 -876 2040 106 0 0 chr4 99857211 99857476 -102470871 - AluSg SINE Alu -45 265 1 297 270 56 127 chr4 99858271 99858593 -102469754 + MLT1G-int LTR MaLR 1073 1371 0 700 231 102 117 chr4 99858593 99859149 -102469198 + MLT1G LTR MaLR 1 540 -2 1744 131 22 73 chr4 99859383 99859696 -102468651 + AluJb SINE Alu 13 309 -3 264 280 68 68 chr4 99860241 99860373 -102467974 - L2 LINE L2 -7 3265 3134 546 277 71 41 chr4 99860891 99861158 -102467189 + L1ME4a LINE L1 5384 5658 -463 1826 193 111 144 chr4 99861299 99862221 -102466126 + LTR28 LTR ERV1 1 1020 0 22 35 0 0 chr4 99862226 99862255 -102466092 + AT_rich Low_complexity Low_complexity 1 29 0 273 275 183 17 chr4 99862262 99862382 -102465965 - MIR SINE MIR -112 150 11 274 282 47 24 chr4 99862569 99862739 -102465608 + L1ME4a LINE L1 5946 6119 -2 29 60 0 0 chr4 99863376 99863426 -102464921 + AT_rich Low_complexity Low_complexity 1 50 0 321 259 74 19 chr4 99863950 99864112 -102464235 - MER104 DNA Tc2 -6 174 4 1191 148 22 13 chr4 99864183 99864412 -102463935 + L1MA4 LINE L1 6069 6299 -1 1899 119 11 4 chr4 99864441 99864718 -102463629 + AluSq SINE Alu 1 279 -34 705 39 10 19 chr4 99864719 99864822 -102463525 + (GAGAA)n Simple_repeat Simple_repeat 4 105 0 637 256 29 29 chr4 99865214 99865421 -102462926 - L2 LINE L2 -10 3303 3097 21 0 0 0 chr4 99865479 99865500 -102462847 + AT_rich Low_complexity Low_complexity 1 21 0 2230 97 0 7 chr4 99865727 99866026 -102462321 + AluSc SINE Alu 4 300 -9 2279 108 3 3 chr4 99867276 99867582 -102460765 + AluSx SINE Alu 1 306 -6 261 83 0 0 chr4 99867585 99867621 -102460726 + (GGAGA)n Simple_repeat Simple_repeat 2 37 0 204 344 0 0 chr4 99870238 99870299 -102458048 - MIR SINE MIR -118 144 84 6762 149 24 28 chr4 99870596 99872640 -102455707 + L1MA4 LINE L1 4014 6070 -230 1734 159 14 0 chr4 99872640 99872917 -102455430 + AluSx SINE Alu 21 301 -11 267 31 0 0 chr4 99872917 99872949 -102455398 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 1181 188 39 32 chr4 99872949 99873258 -102455089 + L1MA4 LINE L1 5989 6299 -1 808 248 79 33 chr4 99873653 99873867 -102454480 - MER58A DNA MER1_type 0 224 1 963 264 52 18 chr4 99873893 99874223 -102454124 - MLT1J LTR MaLR 0 511 171 24 0 0 0 chr4 99874323 99874347 -102454000 + AT_rich Low_complexity Low_complexity 1 24 0 244 299 58 46 chr4 99875929 99876103 -102452244 + L2 LINE L2 2749 2924 -390 1628 186 46 41 chr4 99876359 99876747 -102451600 + MLT1B LTR MaLR 1 390 0 298 333 184 15 chr4 99876747 99876948 -102451399 - MIR SINE MIR -25 237 3 285 229 36 12 chr4 99877218 99877301 -102451046 + HsTC2 DNA Tc2 1 85 -1813 210 256 0 0 chr4 99877517 99877560 -102450787 + A-rich Low_complexity Low_complexity 5 47 0 255 61 0 0 chr4 99877696 99877729 -102450618 + (A)n Simple_repeat Simple_repeat 1 33 0 620 136 0 29 chr4 99878729 99878832 -102449515 + AluJo SINE Alu 37 136 -176 379 257 28 83 chr4 99879062 99879131 -102449216 + MIR SINE MIR 125 183 -79 2160 104 3 10 chr4 99879131 99879428 -102448919 + AluSx SINE Alu 1 295 -17 379 257 28 83 chr4 99879428 99879502 -102448845 + MIR SINE MIR 183 260 -2 682 256 26 89 chr4 99880216 99880485 -102447862 - MIR SINE MIR -3 259 8 227 257 48 76 chr4 99880520 99880625 -102447722 + MER91C DNA MER1_type 38 139 -1 27731 93 11 5 chr4 99880919 99885447 -102442900 + L1PA7 LINE L1 1268 5826 -328 2786 19 0 0 chr4 99885447 99885757 -102442590 + AluYb8 SINE Alu 1 310 -8 27731 93 11 5 chr4 99885757 99886085 -102442262 + L1PA7 LINE L1 5826 6150 -4 218 284 15 15 chr4 99886354 99886421 -102441926 - MIR SINE MIR -123 139 73 205 272 198 0 chr4 99887024 99887105 -102441242 + MIR SINE MIR 161 257 -5 1909 143 0 3 chr4 99888007 99888294 -102440053 - AluSx SINE Alu -26 286 1 1544 186 24 14 chr4 99889333 99889628 -102438719 + AluJo SINE Alu 6 303 -9 22 56 0 0 chr4 99890715 99890751 -102437596 + AT_rich Low_complexity Low_complexity 1 36 0 1838 115 88 3 chr4 99890815 99891146 -102437201 - MER46B DNA MER2_type -1 235 2 229 317 99 20 chr4 99891293 99891394 -102436953 + MIR3 SINE MIR 67 175 -33 725 278 51 28 chr4 99891455 99891642 -102436705 - MIR SINE MIR 0 262 66 2130 69 65 0 chr4 99891642 99891919 -102436428 + AluSp SINE Alu 4 298 -15 725 278 51 28 chr4 99891919 99891986 -102436361 - MIR SINE MIR -196 66 2 22 70 0 0 chr4 99893513 99893556 -102434791 + AT_rich Low_complexity Low_complexity 1 43 0 2121 114 3 7 chr4 99893610 99893909 -102434438 - AluSq SINE Alu -9 304 7 1589 97 26 9 chr4 99894633 99894859 -102433488 + MER30 DNA MER1_type 1 230 0 1209 161 4 38 chr4 99896023 99896259 -102432088 - AluJo SINE Alu -4 308 81 851 228 26 16 chr4 99896540 99896558 -102431789 + L1MDa LINE L1 34 50 -6490 1718 143 0 0 chr4 99896558 99896810 -102431537 - AluSg SINE Alu -20 290 39 851 228 26 16 chr4 99896810 99896984 -102431363 + L1MDa LINE L1 50 228 -6312 303 49 0 0 chr4 99897314 99897355 -102430992 + (TG)n Simple_repeat Simple_repeat 2 42 0 198 231 0 0 chr4 99899243 99899282 -102429065 - L2 LINE L2 -16 3256 3218 491 318 48 48 chr4 99899376 99899687 -102428660 + L2 LINE L2 3000 3310 -3 413 217 58 131 chr4 99901620 99902049 -102426298 + L1ME4a LINE L1 5628 6025 -96 220 363 73 63 chr4 99904462 99904762 -102423585 - L2 LINE L2 0 3272 2970 818 332 102 37 chr4 99904892 99905676 -102422671 - L2 LINE L2 -633 2681 1847 838 201 0 18 chr4 99906746 99906915 -102421432 + FRAM SINE Alu 11 176 0 183 298 18 44 chr4 99906999 99907113 -102421234 + L2 LINE L2 2352 2462 -852 445 177 0 66 chr4 99908926 99909107 -102419240 + GA-rich Low_complexity Low_complexity 2 170 0 272 278 41 21 chr4 99910163 99910260 -102418087 - MLT1K LTR MaLR -43 545 447 214 279 63 0 chr4 99911733 99911812 -102416535 + MIR SINE MIR 82 165 -97 22 56 0 0 chr4 99912389 99912425 -102415922 + AT_rich Low_complexity Low_complexity 1 36 0 1387 209 25 7 chr4 99912788 99913065 -102415282 + AluJo SINE Alu 1 282 -30 2463 167 9 2 chr4 99913314 99913739 -102414608 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr4 99914686 99914708 -102413639 + AT_rich Low_complexity Low_complexity 1 22 0 499 255 12 37 chr4 99915583 99915744 -102412603 - MER112 DNA MER1_type -103 157 1 27 0 0 0 chr4 99916135 99916162 -102412185 + AT_rich Low_complexity Low_complexity 1 27 0 1798 162 3 27 chr4 99916367 99916664 -102411683 - AluJo SINE Alu -18 294 5 1860 175 118 0 chr4 99916891 99917256 -102411091 - MSTA LTR MaLR -20 408 1 10018 159 12 2 chr4 99917261 99918886 -102409461 - MSTA-int LTR MaLR -6 1645 5 2045 207 67 0 chr4 99918890 99919291 -102409056 - MSTA LTR MaLR 0 428 1 190 344 117 43 chr4 99920256 99920538 -102407809 + L2 LINE L2 721 1023 -2291 358 359 79 13 chr4 99920675 99920993 -102407354 + L2 LINE L2 2292 2630 -684 938 193 35 5 chr4 99921098 99921300 -102407047 - MER3 DNA MER1_type 0 209 2 307 266 43 32 chr4 99921301 99921395 -102406952 + L2 LINE L2 3148 3242 -30 671 319 51 0 chr4 99922442 99922699 -102405648 + MLT1J1 LTR MaLR 64 333 -113 1967 132 39 39 chr4 99922789 99923153 -102405194 + THE1B LTR MaLR 1 364 0 182 295 103 0 chr4 99923844 99923922 -102404425 + L2 LINE L2 3228 3313 0 1722 151 11 25 chr4 99924152 99924437 -102403910 - AluJo SINE Alu -31 281 1 617 286 29 6 chr4 99925498 99925669 -102402678 - MIR SINE MIR -28 234 60 1372 242 53 8 chr4 99925848 99926203 -102402144 + MLT1C LTR MaLR 97 467 0 316 345 84 13 chr4 99926445 99926683 -102401664 - L2 LINE L2 -1070 2244 1990 207 69 0 0 chr4 99926956 99926985 -102401362 + (T)n Simple_repeat Simple_repeat 1 29 0 951 201 6 0 chr4 99926985 99927159 -102401188 - FAM SINE Alu 0 175 1 227 298 22 84 chr4 99927405 99927583 -102400764 - L2 LINE L2 -174 3098 2932 1055 89 0 0 chr4 99928393 99928539 -102399808 - L1PA8 LINE L1 0 6172 6027 2007 158 65 3 chr4 99931085 99931452 -102396895 - MLT1B LTR MaLR 0 390 1 375 206 187 0 chr4 99932024 99932131 -102396216 - L2 LINE L2 0 3313 3187 22 0 0 0 chr4 99932323 99932345 -102396002 + AT_rich Low_complexity Low_complexity 1 22 0 405 0 0 0 chr4 99932768 99932813 -102395534 + (TC)n Simple_repeat Simple_repeat 2 46 0 306 0 0 0 chr4 99932812 99932846 -102395501 + (TG)n Simple_repeat Simple_repeat 1 34 0 * 369 0 0 0 chr4 99932975 99933016 -102395331 + (CA)n Simple_repeat Simple_repeat 1 41 0 403 279 140 53 chr4 99933177 99933442 -102394905 - L1ME LINE L1 -462 5702 5415 609 203 52 13 chr4 99933743 99933896 -102394451 + MER112 DNA MER1_type 90 248 -12 25 51 0 0 chr4 99935554 99935593 -102392754 + AT_rich Low_complexity Low_complexity 1 39 0 268 132 0 0 chr4 99935593 99935646 -102392701 + L1MC4 LINE L1 6651 6703 -1339 1518 236 80 33 chr4 99935729 99936178 -102392169 + MLT1D LTR MaLR 36 505 0 2280 140 13 5 chr4 99936355 99936727 -102391620 - THE1C LTR MaLR 0 375 1 1748 157 7 20 chr4 99936821 99937127 -102391220 + AluJo SINE Alu 11 312 0 479 336 21 21 chr4 99937128 99937467 -102390880 + L1ME4a LINE L1 5574 5912 -209 225 65 0 0 chr4 99940593 99940624 -102387723 + (TC)n Simple_repeat Simple_repeat 2 32 0 207 0 0 0 chr4 99941265 99941288 -102387059 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 255 224 109 0 chr4 99942060 99942145 -102386202 - MIR SINE MIR -62 146 99 192 355 32 0 chr4 99942385 99942447 -102385900 + L2 LINE L2 3003 3066 -206 379 271 215 14 chr4 99942681 99942825 -102385522 - MER5A DNA MER1_type -6 183 11 267 298 70 9 chr4 99943107 99943221 -102385126 + L2 LINE L2 3193 3313 0 1656 215 16 21 chr4 99944139 99944515 -102383832 + MLT1A2 LTR MaLR 1 374 0 697 285 65 5 chr4 99946348 99946562 -102381785 + MIR SINE MIR 15 241 -21 357 307 107 58 chr4 99946756 99947365 -102380982 - HAL1b LINE L1 -641 707 69 183 162 0 0 chr4 99947622 99947659 -102380688 + T-rich Low_complexity Low_complexity 1 37 0 339 298 81 42 chr4 99948649 99949119 -102379228 - L1MEc LINE L1 -3576 2570 2110 1727 236 62 67 chr4 99949795 99950345 -102378002 - MLT1H LTR MaLR -2 547 1 2143 125 0 0 chr4 99950523 99950819 -102377528 - AluSx SINE Alu -16 296 1 370 365 16 60 chr4 99950865 99951114 -102377233 - L2 LINE L2 -537 2777 2540 193 298 0 35 chr4 99951155 99951212 -102377135 - L2 LINE L2 -22 3291 3237 22 70 0 0 chr4 99951433 99951476 -102376871 + AT_rich Low_complexity Low_complexity 1 43 0 435 38 0 0 chr4 99952055 99952108 -102376239 + (CA)n Simple_repeat Simple_repeat 2 54 0 488 321 5 21 chr4 99952380 99952567 -102375780 + MIR SINE MIR 37 220 -42 24 0 0 0 chr4 99952856 99952880 -102375467 + AT_rich Low_complexity Low_complexity 1 24 0 260 261 172 38 chr4 99952972 99953129 -102375218 + MER5B DNA MER1_type 1 178 0 249 292 65 65 chr4 99953202 99953298 -102375049 - MIR3 SINE MIR -21 187 89 2092 111 24 0 chr4 99953298 99953587 -102374760 + AluSx SINE Alu 1 296 -16 249 292 65 65 chr4 99953587 99953644 -102374703 - MIR3 SINE MIR -118 90 34 286 245 53 0 chr4 99953657 99953751 -102374596 + L1MC4 LINE L1 7444 7542 -500 981 191 71 0 chr4 99953804 99954029 -102374318 + L1MB3 LINE L1 5941 6181 -2 2067 137 10 0 chr4 99954127 99954427 -102373920 + AluSx SINE Alu 1 303 -9 1676 181 13 19 chr4 99954438 99954752 -102373595 + AluJo SINE Alu 1 312 0 23 78 0 0 chr4 99954981 99955032 -102373315 + AT_rich Low_complexity Low_complexity 1 51 0 1615 162 4 11 chr4 99955430 99955708 -102372639 - AluJo SINE Alu 0 312 37 267 329 25 0 chr4 99955812 99955891 -102372456 + MIR SINE MIR 3 83 -179 1111 86 0 0 chr4 99955907 99956059 -102372288 + L1PA4 LINE L1 6001 6152 -3 303 280 40 32 chr4 99956184 99956309 -102372038 + L1ME LINE L1 5262 5387 -2421 1579 192 118 37 chr4 99956336 99956795 -102371552 + LTR54B LTR ERV1 1 496 -2 388 236 28 9 chr4 99956876 99956982 -102371365 + L1ME LINE L1 5555 5662 -459 237 227 0 0 chr4 99957086 99957130 -102371217 + (CA)n Simple_repeat Simple_repeat 1 44 0 23 33 0 0 chr4 99957227 99957257 -102371090 + AT_rich Low_complexity Low_complexity 1 30 0 509 319 38 7 chr4 99958379 99958597 -102369750 + MIR SINE MIR 25 248 -14 2411 75 0 0 chr4 99959367 99959660 -102368687 - AluY SINE Alu -18 293 1 2211 71 0 20 chr4 99960062 99960357 -102367990 - AluY SINE Alu -22 289 1 22 56 0 0 chr4 99960532 99960568 -102367779 + AT_rich Low_complexity Low_complexity 1 36 0 2961 128 20 67 chr4 99960704 99961289 -102367058 + L1MB2 LINE L1 5600 6157 -14 2338 80 0 10 chr4 99961355 99961655 -102366692 + AluSc SINE Alu 1 297 -12 520 206 8 24 chr4 99962336 99962462 -102365885 - FLAM_A SINE Alu -18 124 1 701 290 61 19 chr4 99963833 99964047 -102364300 + MIR SINE MIR 2 224 -38 432 0 0 0 chr4 99965919 99965967 -102362380 + (TG)n Simple_repeat Simple_repeat 2 49 0 193 200 36 18 chr4 99966373 99966428 -102361919 + L2 LINE L2 2925 2980 -333 1899 148 3 10 chr4 99966605 99966896 -102361451 + AluSx SINE Alu 14 302 -10 1447 170 22 74 chr4 99966900 99967212 -102361135 + AluJb SINE Alu 1 296 -16 208 292 79 34 chr4 99967693 99967782 -102360565 - L2 LINE L2 -923 2391 2299 194 308 90 0 chr4 99968013 99968091 -102360256 - L2 LINE L2 -2 3311 3227 2240 104 3 0 chr4 99968181 99968489 -102359858 + AluSc SINE Alu 1 309 0 250 379 80 30 chr4 99968707 99969008 -102359339 - L2 LINE L2 -1807 1507 1192 2223 96 0 13 chr4 99969372 99969674 -102358673 + AluSg SINE Alu 1 298 -12 1821 145 4 0 chr4 99969793 99970062 -102358285 + AluSg SINE Alu 38 307 -3 801 179 49 6 chr4 99970198 99970360 -102357987 - MER2 DNA MER2_type -25 320 152 1301 117 53 0 chr4 99971721 99971927 -102356420 - L1PA15 LINE L1 -9 6156 5940 2028 90 13 40 chr4 99971939 99972095 -102356252 - AluSq SINE Alu -22 291 145 2627 43 0 0 chr4 99972095 99972399 -102355948 - AluY SINE Alu -7 304 1 2028 90 13 40 chr4 99972399 99972541 -102355806 - AluSq SINE Alu -168 145 1 2129 119 3 3 chr4 99972612 99972914 -102355433 + AluSx SINE Alu 1 302 -10 890 240 35 31 chr4 99973721 99973950 -102354397 - MIR SINE MIR -30 232 3 23 33 0 0 chr4 99974418 99974448 -102353899 + AT_rich Low_complexity Low_complexity 1 30 0 2493 64 0 16 chr4 99976813 99977126 -102351221 + AluY SINE Alu 1 308 -3 260 247 37 0 chr4 99977287 99977368 -102350979 + MER103 DNA DNA 33 116 -50 306 272 43 86 chr4 99977764 99977996 -102350351 - L1MC/D LINE L1 -2314 5494 5273 344 164 0 0 chr4 99979109 99979176 -102349171 - L1MA6 LINE L1 0 6300 6234 24 0 0 0 chr4 99979280 99979304 -102349043 + AT_rich Low_complexity Low_complexity 1 24 0 743 287 45 20 chr4 99979629 99979873 -102348474 + MIR SINE MIR 13 262 0 1532 258 66 57 chr4 99980215 99980870 -102347477 + MER20B DNA MER1_type 1 661 -122 328 332 47 47 chr4 99980926 99981119 -102347228 + L3b LINE CR1 1221 1413 -170 423 325 9 0 chr4 99983077 99983191 -102345156 - L2 LINE L2 -3 3269 3155 196 268 0 0 chr4 99983265 99983306 -102345041 - MIR SINE MIR -21 241 201 23 0 0 0 chr4 99983333 99983356 -102344991 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 99983381 99983418 -102344929 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr4 99983476 99983500 -102344847 + AT_rich Low_complexity Low_complexity 1 24 0 1648 203 71 39 chr4 99984379 99984871 -102343476 + Charlie4a DNA MER1_type 1 508 0 3162 254 168 32 chr4 99985192 99985241 -102343106 + L2 LINE L2 1351 1392 -1922 252 0 0 0 chr4 99985241 99985269 -102343078 + (CA)n Simple_repeat Simple_repeat 2 29 0 3162 254 168 32 chr4 99985269 99986651 -102341696 + L2 LINE L2 1392 2977 -337 6229 135 44 10 chr4 99986985 99988281 -102340066 - L1MA3 LINE L1 0 6305 4975 3386 49 8 76 chr4 99988282 99988753 -102339594 - MLT2A1 LTR ERVL 0 444 6 1873 152 0 3 chr4 99988760 99989069 -102339278 - L1MA3 LINE L1 -1166 4980 4673 2547 60 0 0 chr4 99989421 99989722 -102338625 + AluY SINE Alu 1 301 -10 21 0 0 0 chr4 99989926 99989947 -102338400 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr4 99990805 99990839 -102337508 + (CA)n Simple_repeat Simple_repeat 1 34 0 1201 164 25 10 chr4 99990878 99991126 -102337221 - L1MA9 LINE L1 -141 6171 5923 496 279 221 11 chr4 99991841 99992031 -102336316 + MIR SINE MIR 6 235 -27 216 97 0 0 chr4 99992122 99992153 -102336194 + (CATA)n Simple_repeat Simple_repeat 4 34 0 577 123 0 0 chr4 99992421 99992502 -102335845 + AluSg/x SINE Alu 213 293 -17 42533 34 22 2 chr4 99993277 99999304 -102329043 + L1PA3 LINE L1 1 6155 0 25 65 0 0 chr4 99999412 99999458 -102328889 + AT_rich Low_complexity Low_complexity 1 46 0 605 209 52 0 chr4 99999729 99999844 -102328503 + FLAM_A SINE Alu 1 121 -12 29 47 0 0 chr4 99999849 99999892 -102328455 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr4 100000091 100000120 -102328227 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr4 100000207 100000241 -102328106 + AT_rich Low_complexity Low_complexity 1 34 0 206 331 102 31 chr4 100001591 100001718 -102326629 - L2 LINE L2 -438 2876 2741 494 226 111 138 chr4 100001733 100001851 -102326496 - MIR SINE MIR -2 260 140 1556 148 8 23 chr4 100001851 100002114 -102326233 - AluJo SINE Alu -11 301 43 494 226 111 138 chr4 100002114 100002256 -102326091 - MIR SINE MIR -122 140 7 2103 131 0 3 chr4 100002266 100002563 -102325784 - AluSx SINE Alu -16 296 1 6294 122 91 29 chr4 100002704 100002863 -102325484 - Tigger3b DNA MER2_type -1797 1231 1083 3285 135 35 16 chr4 100002863 100003380 -102324967 - MER1A DNA MER1_type 0 527 1 6294 122 91 29 chr4 100003380 100004379 -102323968 - Tigger3b DNA MER2_type -1945 1083 1 25 31 0 0 chr4 100004620 100004652 -102323695 + AT_rich Low_complexity Low_complexity 1 32 0 322 333 0 34 chr4 100005381 100005498 -102322849 + L2 LINE L2 3151 3263 -9 1266 180 46 0 chr4 100005498 100005715 -102322632 + AluJo SINE Alu 1 227 -85 646 144 253 0 chr4 100006222 100006368 -102321979 - MER5A DNA MER1_type 0 189 7 434 257 59 0 chr4 100006419 100006571 -102321776 - MER103 DNA DNA -3 163 3 22 0 0 0 chr4 100007303 100007325 -102321022 + AT_rich Low_complexity Low_complexity 1 22 0 208 237 194 11 chr4 100007485 100007578 -102320769 + L2 LINE L2 3195 3304 -9 21 0 0 0 chr4 100008127 100008148 -102320199 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 100009210 100009247 -102319100 + AT_rich Low_complexity Low_complexity 1 37 0 344 252 92 0 chr4 100009400 100009519 -102318828 + MLT1L LTR MaLR 169 298 -317 216 0 0 0 chr4 100009527 100009551 -102318796 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1709 182 0 7 chr4 100009554 100009840 -102318507 - AluJo SINE Alu -26 286 3 27 0 0 0 chr4 100010248 100010275 -102318072 + AT_rich Low_complexity Low_complexity 1 27 0 2353 81 3 0 chr4 100011017 100011312 -102317035 + AluY SINE Alu 1 296 -15 7251 46 5 0 chr4 100012231 100013392 -102314955 + L1PA5 LINE L1 5038 6202 0 523 290 75 23 chr4 100013542 100013654 -102314693 - L1ME LINE L1 -316 5805 5700 1294 203 94 19 chr4 100013654 100013974 -102314373 + MER2 DNA MER2_type 1 344 0 523 290 75 23 chr4 100013974 100014168 -102314179 - L1ME LINE L1 -421 5700 5483 1908 104 34 0 chr4 100014515 100014783 -102313564 + AluSc SINE Alu 3 279 -30 258 56 0 0 chr4 100014786 100014822 -102313525 + (CATA)n Simple_repeat Simple_repeat 2 37 0 345 236 111 14 chr4 100014838 100014982 -102313365 - L1MEd LINE L1 -3858 2271 2114 405 254 62 98 chr4 100015588 100016037 -102312310 - L1MEd LINE L1 -5002 1117 685 394 332 61 54 chr4 100016264 100016559 -102311788 - L1MEd LINE L1 -5701 418 122 188 79 53 0 chr4 100017532 100017570 -102310777 + (CAAA)n Simple_repeat Simple_repeat 4 43 0 21 0 0 0 chr4 100020147 100020168 -102308179 + AT_rich Low_complexity Low_complexity 1 21 0 1758 102 33 261 chr4 100022024 100022484 -102305863 + Tigger4(Zombi) DNA MER2_type 7 2731 0 1230 295 199 29 chr4 100023055 100023709 -102304638 + L2 LINE L2 5 769 -2545 297 346 28 45 chr4 100023727 100023906 -102304441 + MER5B DNA MER1_type 1 176 -2 435 287 167 0 chr4 100023927 100024077 -102304270 + MER5A DNA MER1_type 12 186 -3 * 1456 294 161 9 chr4 100024077 100024373 -102303974 + L2 LINE L2 800 1049 -2265 1938 132 52 14 chr4 100024373 100024662 -102303685 - AluSx SINE Alu -11 301 2 1456 294 161 9 chr4 100024662 100025054 -102303293 + L2 LINE L2 1049 1593 -1721 192 370 12 0 chr4 100025792 100025873 -102302474 - MIR3 SINE MIR -2 206 125 373 312 36 28 chr4 100026551 100026804 -102301543 + L1ME4a LINE L1 5591 5845 -276 1697 179 3 14 chr4 100026811 100027108 -102301239 + AluJo SINE Alu 1 294 -18 220 243 72 0 chr4 100027146 100027298 -102301049 + (TA)n Simple_repeat Simple_repeat 2 164 0 1697 176 72 0 chr4 100027315 100027605 -102300742 + AluJo SINE Alu 2 312 0 282 182 80 11 chr4 100027639 100027727 -102300620 + L1ME4a LINE L1 6006 6099 -22 389 307 74 31 chr4 100028057 100028220 -102300127 - MIR3 SINE MIR -9 199 30 2129 159 108 45 chr4 100028711 100029221 -102299126 - MER34 LTR ERV1 0 542 1 3326 154 27 12 chr4 100029227 100029817 -102298530 + MER7C DNA MER2_type 4 602 0 881 176 0 20 chr4 100030771 100030924 -102297423 + FRAM SINE Alu 1 149 -27 305 0 0 0 chr4 100031280 100031315 -102297032 - U2 snRNA snRNA -153 35 1 237 173 19 19 chr4 100031909 100031961 -102296386 + LTR16C LTR ERVL 440 491 0 2444 257 158 27 chr4 100032841 100033810 -102294537 + L2 LINE L2 1616 2731 -583 2756 89 53 69 chr4 100033810 100033846 -102294501 - MLT2A1 LTR ERVL 0 444 409 201 39 0 0 chr4 100033846 100033872 -102294475 + (TA)n Simple_repeat Simple_repeat 2 27 0 2756 89 53 69 chr4 100033872 100034286 -102294061 - MLT2A1 LTR ERVL -35 409 1 2444 257 158 27 chr4 100034286 100034354 -102293993 + L2 LINE L2 2731 2789 -525 1207 190 4 9 chr4 100034354 100034580 -102293767 + AluJo SINE Alu 84 308 -4 2949 3 0 0 chr4 100035894 100036211 -102292136 - AluYb8 SINE Alu -1 317 1 546 278 71 42 chr4 100036269 100036481 -102291866 + MIR SINE MIR 43 260 -2 24 0 0 0 chr4 100037004 100037028 -102291319 + AT_rich Low_complexity Low_complexity 1 24 0 348 280 113 18 chr4 100038037 100038205 -102290142 - MIR SINE MIR -50 212 29 443 255 247 50 chr4 100038777 100038859 -102289488 + Charlie2 DNA MER1_type 39 104 -2678 2081 119 3 0 chr4 100038859 100039152 -102289195 - AluY SINE Alu -17 294 1 443 255 247 50 chr4 100039152 100039308 -102289039 + Charlie2 DNA MER1_type 104 324 -2458 2380 223 109 34 chr4 100039311 100039969 -102288378 + Charlie2 DNA MER1_type 1856 2606 -256 2290 88 7 3 chr4 100039969 100040264 -102288083 - AluSp SINE Alu -16 297 2 2380 223 109 34 chr4 100040264 100040541 -102287806 + Charlie2 DNA MER1_type 2606 2861 -1 402 283 13 50 chr4 100040795 100040954 -102287393 + MIR SINE MIR 60 212 -50 383 238 93 97 chr4 100041651 100041941 -102286406 + L2 LINE L2 1639 1927 -1387 606 268 25 13 chr4 100042139 100042296 -102286051 - MER5B DNA MER1_type -13 165 7 256 366 49 0 chr4 100042316 100042439 -102285908 + L2 LINE L2 2201 2329 -985 437 269 137 15 chr4 100042897 100043094 -102285253 + MIR SINE MIR 31 251 -11 278 319 43 22 chr4 100043838 100043976 -102284371 - L3b LINE CR1 -147 1436 1296 2263 45 45 10 chr4 100045100 100045389 -102282958 - AluY SINE Alu -12 299 1 696 256 42 0 chr4 100046252 100046420 -102281927 + MER5B DNA MER1_type 1 175 -3 1504 182 43 40 chr4 100046434 100046736 -102281611 - AluJb SINE Alu -7 305 3 2199 109 3 20 chr4 100046862 100047165 -102281182 - AluSq SINE Alu -15 298 1 2633 26 0 6 chr4 100048368 100048679 -102279668 - AluY SINE Alu -2 309 1 755 301 113 31 chr4 100048811 100049447 -102278900 + L2 LINE L2 2619 3313 0 2076 135 0 0 chr4 100051894 100052201 -102276146 + AluSx SINE Alu 1 307 0 574 274 103 10 chr4 100052498 100052702 -102275645 - MIR SINE MIR 0 262 40 22 56 0 0 chr4 100054115 100054151 -102274196 + AT_rich Low_complexity Low_complexity 1 36 0 2064 146 0 16 chr4 100055613 100055928 -102272419 - AluJo SINE Alu 0 312 3 2118 116 17 43 chr4 100056942 100057288 -102271059 - MER1B DNA MER1_type 0 337 1 2133 121 0 0 chr4 100057557 100057862 -102270485 + AluSx SINE Alu 1 305 0 217 305 85 0 chr4 100058416 100058498 -102269849 - L2 LINE L2 -5 3308 3220 307 326 202 23 chr4 100058614 100058963 -102269384 - L2 LINE L2 -649 2665 2380 815 228 43 14 chr4 100058963 100059174 -102269173 - MER20 DNA MER1_type 0 219 3 307 326 202 23 chr4 100059174 100059551 -102268796 - L2 LINE L2 -934 2380 1809 3871 124 36 14 chr4 100059565 100060202 -102268145 - MER39B LTR ERV1 0 653 3 204 295 33 33 chr4 100061415 100061476 -102266871 + MIR3 SINE MIR 111 171 -37 26 64 0 0 chr4 100062239 100062286 -102266061 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr4 100062316 100062345 -102266002 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 100062620 100062651 -102265696 + AT_rich Low_complexity Low_complexity 1 31 0 318 235 111 70 chr4 100062794 100063037 -102265310 - MER112 DNA MER1_type -3 253 1 629 259 123 18 chr4 100063044 100063264 -102265083 + MIR SINE MIR 7 249 -13 276 241 11 58 chr4 100063460 100063547 -102264800 + MER5A DNA MER1_type 107 189 0 231 182 91 0 chr4 100063757 100063812 -102264535 - Charlie8 DNA MER1_type -14 2403 2344 237 268 28 0 chr4 100063816 100063887 -102264460 - Charlie8 DNA MER1_type -1989 428 356 295 244 47 76 chr4 100063915 100064087 -102264260 - Charlie8 DNA MER1_type -2194 223 57 260 301 110 44 chr4 100064687 100064823 -102263524 - MER117 DNA MER1_type -1 196 52 269 305 8 94 chr4 100065163 100065214 -102263133 - MIR3 SINE MIR -25 183 129 2244 78 0 3 chr4 100065214 100065532 -102262815 - AluY SINE Alu 0 318 2 269 305 8 94 chr4 100065532 100065607 -102262740 - MIR3 SINE MIR -79 129 67 1285 224 95 43 chr4 100065672 100066113 -102262234 - MLT1D LTR MaLR -28 477 14 480 324 143 0 chr4 100066124 100066334 -102262013 + MIR SINE MIR 12 251 -11 24 32 0 0 chr4 100067081 100067112 -102261235 + AT_rich Low_complexity Low_complexity 1 31 0 1564 186 10 22 chr4 100067172 100067483 -102260864 + AluJo SINE Alu 1 307 -5 525 243 46 29 chr4 100067687 100067860 -102260487 + MIR SINE MIR 85 260 -2 22 0 0 0 chr4 100068249 100068271 -102260076 + AT_rich Low_complexity Low_complexity 1 22 0 196 283 0 0 chr4 100068434 100068480 -102259867 - MIR SINE MIR -114 148 103 23 33 0 0 chr4 100068901 100068931 -102259416 + AT_rich Low_complexity Low_complexity 1 30 0 352 191 0 0 chr4 100069349 100069417 -102258930 - L1MC4 LINE L1 -1339 6703 6636 986 87 0 0 chr4 100069420 100069546 -102258801 - AluY SINE Alu -12 299 174 527 233 0 87 chr4 100069594 100069813 -102258534 - L2 LINE L2 0 3313 3114 767 348 99 14 chr4 100069987 100070412 -102257935 - L2 LINE L2 -19 3294 2834 1789 145 9 53 chr4 100070446 100070764 -102257583 - AluJo SINE Alu -3 309 6 637 301 74 5 chr4 100070857 100071060 -102257287 + MIR SINE MIR 8 224 -38 884 232 99 10 chr4 100071094 100071387 -102256960 + MER33 DNA MER1_type 6 324 0 616 287 121 5 chr4 100071963 100072186 -102256161 - MIR SINE MIR -12 250 2 1735 167 13 16 chr4 100072953 100073265 -102255082 + AluSx SINE Alu 1 311 -1 21 57 0 0 chr4 100073983 100074018 -102254329 + AT_rich Low_complexity Low_complexity 1 35 0 592 282 65 81 chr4 100074051 100074483 -102253864 + LTR16A LTR ERVL 16 440 -10 262 371 57 0 chr4 100074580 100074685 -102253662 - L2 LINE L2 -5 3308 3198 1166 247 97 69 chr4 100074846 100075177 -102253170 + L2 LINE L2 2434 2754 -559 1570 186 3 14 chr4 100075177 100075488 -102252859 + AluJb SINE Alu 1 308 0 1166 247 97 69 chr4 100075488 100075997 -102252350 + L2 LINE L2 2754 3313 0 2168 153 0 56 chr4 100076182 100076595 -102251752 + MLT1B LTR MaLR 1 390 0 2172 117 67 6 chr4 100076678 100077021 -102251326 - THE1B LTR MaLR 0 364 1 338 274 43 0 chr4 100077423 100077540 -102250807 - MER103 DNA DNA -42 124 3 2331 104 16 8 chr4 100077885 100078250 -102250097 + L1MA2 LINE L1 5937 6304 0 2534 53 7 0 chr4 100078346 100078645 -102249702 - AluY SINE Alu -10 301 1 271 344 74 0 chr4 100079900 100080022 -102248325 - L2 LINE L2 0 3313 3183 991 203 5 0 chr4 100080326 100080513 -102247834 + MER5A DNA MER1_type 1 188 -1 2181 106 3 0 chr4 100080546 100080828 -102247519 + AluSx SINE Alu 3 285 -27 237 196 0 0 chr4 100080940 100080991 -102247356 + (TG)n Simple_repeat Simple_repeat 2 52 0 2420 85 0 0 chr4 100083344 100083649 -102244698 - AluY SINE Alu -3 308 4 31 76 0 0 chr4 100084391 100084457 -102243890 + AT_rich Low_complexity Low_complexity 1 66 0 9847 161 23 17 chr4 100084568 100085621 -102242726 + L1MA8 LINE L1 3419 4464 -1827 2359 103 3 0 chr4 100085621 100085932 -102242415 + AluSx SINE Alu 1 312 0 9847 161 23 17 chr4 100085932 100087713 -102240634 + L1MA8 LINE L1 4464 6269 -22 353 245 0 53 chr4 100088816 100088910 -102239437 - L2 LINE L2 -2 3311 3223 1675 204 0 10 chr4 100088917 100089221 -102239126 + AluJo SINE Alu 6 306 -6 278 284 86 0 chr4 100089451 100089532 -102238815 + L2 LINE L2 3185 3272 0 225 368 92 23 chr4 100089653 100089827 -102238520 - MIR SINE MIR -70 192 7 435 254 8 25 chr4 100089855 100089977 -102238370 - MER103 DNA DNA 0 166 47 32 0 0 0 chr4 100090557 100090589 -102237758 + AT_rich Low_complexity Low_complexity 1 32 0 218 307 107 40 chr4 100091029 100091179 -102237168 + MIR SINE MIR 57 216 -46 22 0 0 0 chr4 100092198 100092220 -102236127 + AT_rich Low_complexity Low_complexity 1 22 0 288 204 0 0 chr4 100092290 100092339 -102236008 - L2 LINE L2 0 3313 3265 208 246 0 0 chr4 100094125 100094182 -102234165 + A-rich Low_complexity Low_complexity 1 57 0 216 158 0 0 chr4 100094577 100094615 -102233732 + (TG)n Simple_repeat Simple_repeat 2 39 0 573 175 22 66 chr4 100095071 100095208 -102233139 + MLT1D LTR MaLR 1 131 -374 815 203 199 35 chr4 100095306 100095592 -102232755 + MLT1D LTR MaLR 126 458 -47 472 299 12 18 chr4 100096301 100096468 -102231879 + MER5B DNA MER1_type 4 169 -9 2258 105 0 3 chr4 100097298 100097602 -102230745 + AluSq SINE Alu 11 313 0 230 208 19 0 chr4 100099683 100099736 -102228611 + (TA)n Simple_repeat Simple_repeat 1 54 0 2134 140 3 0 chr4 100099806 100100114 -102228233 + AluSx SINE Alu 1 309 -3 378 315 18 0 chr4 100100344 100100455 -102227892 - L2 LINE L2 -1 3312 3200 258 303 77 72 chr4 100100469 100100664 -102227683 + L3 LINE CR1 1203 1398 -179 2296 88 0 0 chr4 100100905 100101214 -102227133 + AluSg SINE Alu 1 309 0 3022 114 140 0 chr4 100101259 100101723 -102226624 + MER1A DNA MER1_type 1 529 0 1762 158 57 17 chr4 100101737 100102086 -102226261 + MLT1A1 LTR MaLR 1 363 -2 610 310 14 23 chr4 100103147 100103363 -102224984 + MIR SINE MIR 16 229 -33 22 0 0 0 chr4 100103920 100103942 -102224405 + AT_rich Low_complexity Low_complexity 1 22 0 878 209 134 81 chr4 100104865 100105185 -102223162 + LTR1B LTR ERV1 314 650 -176 213 39 0 0 chr4 100105187 100105213 -102223134 + (T)n Simple_repeat Simple_repeat 1 26 0 6410 18 0 0 chr4 100105217 100105950 -102222397 - L1HS LINE L1 0 6155 5423 321 83 0 0 chr4 100105951 100105999 -102222348 + L1P LINE L1 3656 3703 -2443 610 193 40 27 chr4 100106041 100106191 -102222156 + LTR1B LTR ERV1 675 826 0 1653 152 11 7 chr4 100106191 100106461 -102221886 + AluJo SINE Alu 31 301 -11 281 286 57 0 chr4 100106526 100106666 -102221681 - L1ME LINE L1 -438 5683 5536 231 114 0 0 chr4 100107056 100107091 -102221256 + (ATG)n Simple_repeat Simple_repeat 2 36 0 285 314 26 13 chr4 100107807 100107960 -102220387 - L1ME LINE L1 -1917 4229 4075 3518 152 13 13 chr4 100107971 100108588 -102219759 - L1PB4 LINE L1 -2 6154 5538 26 50 0 0 chr4 100108866 100108906 -102219441 + AT_rich Low_complexity Low_complexity 1 40 0 9187 28 1 0 chr4 100109019 100110887 -102217460 + L1PA3 LINE L1 4287 6155 0 224 369 143 16 chr4 100111623 100111867 -102216480 - L3b LINE CR1 -1 1582 1308 401 232 202 36 chr4 100112891 100113059 -102215288 - MIR SINE MIR -18 244 49 23 0 0 0 chr4 100113395 100113418 -102214929 + AT_rich Low_complexity Low_complexity 1 23 0 240 294 156 9 chr4 100115776 100115885 -102212462 + L2 LINE L2 3189 3313 0 619 232 113 0 chr4 100116002 100116162 -102212185 - MER45A DNA AcHobo 0 178 1 21 0 0 0 chr4 100116730 100116751 -102211596 + AT_rich Low_complexity Low_complexity 1 21 0 473 286 110 20 chr4 100118121 100118366 -102209981 + L1MC4a LINE L1 5449 5715 -406 230 315 118 20 chr4 100118423 100118626 -102209721 + L1MC4a LINE L1 5724 5946 -1862 457 99 25 12 chr4 100118631 100118712 -102209635 + (GAAA)n Simple_repeat Simple_repeat 4 85 0 228 67 0 0 chr4 100118711 100118741 -102209606 + (GGGA)n Simple_repeat Simple_repeat 2 31 0 * 21235 158 43 13 chr4 100118743 100125464 -102202883 + L1M1 LINE L1 16 6960 -743 2218 113 0 3 chr4 100126353 100126644 -102201703 + AluSc SINE Alu 1 290 -19 1001 211 14 5 chr4 100126924 100127137 -102201210 + MLT2C1 LTR ERVL 1 215 -182 345 169 15 0 chr4 100127131 100127196 -102201151 - MLT2C1 LTR ERVL -313 84 19 * 209 336 19 19 chr4 100127346 100127453 -102200894 + L2 LINE L2 3167 3273 -40 764 229 0 24 chr4 100127683 100127853 -102200494 + FRAM SINE Alu 1 166 0 467 340 97 33 chr4 100128259 100128728 -102199619 + L2 LINE L2 2723 3237 -76 23 0 0 0 chr4 100129487 100129510 -102198837 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr4 100129557 100129588 -102198759 + AT_rich Low_complexity Low_complexity 1 31 0 251 371 202 5 chr4 100130154 100130564 -102197783 + L2 LINE L2 2437 2927 -387 1830 162 0 29 chr4 100130629 100130944 -102197403 - AluJo SINE Alu -6 306 1 208 389 77 10 chr4 100131226 100131356 -102196991 + MIR SINE MIR 3 142 -66 199 335 103 16 chr4 100131535 100131720 -102196627 + L2 LINE L2 2929 3129 -143 1824 160 0 14 chr4 100132081 100132374 -102195973 + AluJo SINE Alu 18 306 -6 257 366 45 15 chr4 100133013 100133147 -102195200 - MIR3 SINE MIR -34 174 37 1765 153 19 25 chr4 100133267 100133581 -102194766 - AluJo SINE Alu 0 312 1 1543 170 6 35 chr4 100133648 100133959 -102194388 + AluJo SINE Alu 3 304 -8 213 325 44 44 chr4 100135741 100135855 -102192492 - MIR SINE MIR -57 151 38 680 263 42 5 chr4 100135970 100136160 -102192187 - MIR SINE MIR 0 262 66 21 82 0 0 chr4 100138079 100138128 -102190219 + AT_rich Low_complexity Low_complexity 1 49 0 241 220 0 0 chr4 100138224 100138274 -102190073 + MIR SINE MIR 97 146 -62 925 261 82 42 chr4 100138394 100138797 -102189550 + MLT1K LTR MaLR 164 582 -6 242 317 97 28 chr4 100138917 100139062 -102189285 - L2 LINE L2 -1 3271 3117 317 250 59 0 chr4 100139114 100139182 -102189165 + MER91C DNA MER1_type 34 105 -35 182 37 37 0 chr4 100139826 100139853 -102188494 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 302 250 15 0 chr4 100140850 100140918 -102187429 + MIR SINE MIR 160 228 -34 205 234 64 0 chr4 100141100 100141158 -102187189 + (TA)n Simple_repeat Simple_repeat 2 55 -96 2234 118 0 6 chr4 100141158 100141471 -102186876 + AluSx SINE Alu 1 311 -1 205 234 64 0 chr4 100141471 100141553 -102186794 + (TA)n Simple_repeat Simple_repeat 55 151 0 * 329 206 37 29 chr4 100141474 100141610 -102186737 + (TATAA)n Simple_repeat Simple_repeat 4 140 0 24 32 0 0 chr4 100141613 100141644 -102186703 + AT_rich Low_complexity Low_complexity 1 31 0 688 181 0 9 chr4 100142329 100142476 -102185871 + FLAM_A SINE Alu 1 146 0 206 259 61 102 chr4 100143169 100143316 -102185031 - MIR SINE MIR -71 191 51 1643 123 4 40 chr4 100143364 100143616 -102184731 - AluJb SINE Alu -60 252 10 32 26 0 0 chr4 100143679 100143718 -102184629 + AT_rich Low_complexity Low_complexity 1 39 0 911 189 28 5 chr4 100144819 100145036 -102183311 - Charlie5 DNA MER1_type 0 2624 2403 300 70 0 0 chr4 100145036 100145079 -102183268 + (TG)n Simple_repeat Simple_repeat 2 44 0 521 137 0 0 chr4 100145079 100145152 -102183195 - AluJ SINE Alu -27 285 213 942 166 0 7 chr4 100145154 100145305 -102183042 - AluJ SINE Alu -162 150 1 656 186 17 57 chr4 100145305 100145415 -102182932 - Charlie5 DNA MER1_type -221 2403 2301 1828 156 0 17 chr4 100145415 100145710 -102182637 + AluSx SINE Alu 1 290 -22 656 186 17 57 chr4 100145710 100145776 -102182571 - Charlie5 DNA MER1_type -323 2301 2234 366 228 49 41 chr4 100145778 100145901 -102182446 - MER3 DNA MER1_type -41 168 45 1225 157 80 13 chr4 100146217 100146517 -102181830 + MER33 DNA MER1_type 1 320 -4 643 286 80 38 chr4 100147637 100147875 -102180472 + MIR SINE MIR 2 249 -13 739 313 158 36 chr4 100149172 100149838 -102178509 + L2 LINE L2 2531 3313 0 1466 305 118 8 chr4 100150316 100150808 -102177539 - MER115 DNA AcHobo 0 693 148 2086 54 92 0 chr4 100151940 100152223 -102176124 + AluY SINE Alu 1 307 0 319 215 9 9 chr4 100152309 100152416 -102175931 + (TA)n Simple_repeat Simple_repeat 1 107 0 236 269 0 0 chr4 100154740 100154792 -102173555 + L2 LINE L2 3262 3313 0 762 147 31 0 chr4 100156593 100156722 -102171625 - FLAM_C SINE Alu 0 133 1 21 36 0 0 chr4 100157714 100157742 -102170605 + AT_rich Low_complexity Low_complexity 1 28 0 255 275 0 25 chr4 100158291 100158338 -102170009 - MER69 DNA AcHobo 0 2526 2480 1725 163 50 0 chr4 100158338 100158620 -102169727 + AluJb SINE Alu 1 296 -16 255 275 0 25 chr4 100158620 100158652 -102169695 - MER69 DNA AcHobo -46 2480 2449 216 0 0 0 chr4 100159409 100159433 -102168914 + (CA)n Simple_repeat Simple_repeat 2 25 0 229 293 177 15 chr4 100160336 100160534 -102167813 - L2 LINE L2 -5 3308 3079 1385 35 0 0 chr4 100162359 100162528 -102165819 - L1PA2 LINE L1 0 6155 5987 180 158 0 0 chr4 100163244 100163282 -102165065 + CT-rich Low_complexity Low_complexity 1 38 0 1697 174 0 3 chr4 100163282 100163570 -102164777 - AluJb SINE Alu -15 297 11 562 275 179 5 chr4 100164798 100165005 -102163342 - MIR SINE MIR -19 243 1 473 198 0 0 chr4 100165628 100165734 -102162613 + Charlie5 DNA MER1_type 17 122 -2490 1585 158 48 13 chr4 100165742 100166116 -102162231 + Charlie5 DNA MER1_type 2234 2620 0 184 245 128 78 chr4 100166684 100166786 -102161561 + MIR3 SINE MIR 96 202 -6 1503 159 0 50 chr4 100166879 100167035 -102161312 - AluJo SINE Alu -22 290 153 2517 119 6 3 chr4 100167035 100167396 -102160951 + THE1B LTR MaLR 1 362 -2 1503 159 0 50 chr4 100167396 100167516 -102160831 - AluJo SINE Alu -159 153 28 180 0 0 0 chr4 100167900 100167920 -102160427 + (A)n Simple_repeat Simple_repeat 1 20 0 1482 172 75 0 chr4 100167943 100168210 -102160137 + AluJb SINE Alu 7 293 -19 1638 164 0 48 chr4 100168573 100168884 -102159463 - AluJo SINE Alu -16 296 1 24 53 0 0 chr4 100168959 100168997 -102159350 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr4 100169994 100170021 -102158326 + AT_rich Low_complexity Low_complexity 1 27 0 216 0 0 0 chr4 100170800 100170824 -102157523 + (TG)n Simple_repeat Simple_repeat 1 24 0 481 259 68 6 chr4 100171892 100172054 -102156293 - MER45A DNA AcHobo -3 175 4 267 340 28 9 chr4 100172384 100172490 -102155857 + MIR3 SINE MIR 69 176 -32 228 35 0 0 chr4 100172600 100172629 -102155718 + (ATG)n Simple_repeat Simple_repeat 2 30 0 631 164 38 193 chr4 100172629 100172893 -102155454 + LTR28 LTR ERV1 5 884 -847 410 291 29 0 chr4 100172994 100173097 -102155250 - MIR SINE MIR -56 206 101 303 28 0 0 chr4 100174573 100174609 -102153738 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 492 297 138 6 chr4 100175582 100175881 -102152466 + L2 LINE L2 2709 3053 -219 1397 202 153 75 chr4 100176290 100176531 -102151816 + MLT1E LTR MaLR 66 287 -306 2491 58 7 0 chr4 100176531 100176840 -102151507 - AluY SINE Alu 0 311 1 1397 202 153 75 chr4 100176840 100177088 -102151259 + MLT1E LTR MaLR 287 593 0 988 175 0 35 chr4 100177436 100177636 -102150711 - AluJo SINE Alu 0 312 120 181 288 15 61 chr4 100177935 100178001 -102150346 + L2 LINE L2 3239 3301 -12 9787 154 17 4 chr4 100178410 100180060 -102148287 - Tigger2 DNA MER2_type -1047 1671 1 280 241 223 18 chr4 100182879 100182991 -102145356 - L2 LINE L2 0 3272 3138 21 0 0 0 chr4 100183501 100183522 -102144825 + AT_rich Low_complexity Low_complexity 1 21 0 843 299 105 70 chr4 100183701 100184651 -102143696 + L2 LINE L2 1968 2951 -363 394 209 9 9 chr4 100184755 100184865 -102143482 + CT-rich Low_complexity Low_complexity 3 112 0 228 328 15 0 chr4 100186633 100186700 -102141647 - L2 LINE L2 -1 3271 3204 1586 179 134 6 chr4 100186750 100187101 -102141246 - MSTD LTR MaLR 0 396 1 427 250 120 0 chr4 100189043 100189151 -102139196 + L2 LINE L2 2516 2636 -678 398 281 87 70 chr4 100189159 100189515 -102138832 - MLT1I LTR MaLR -8 401 40 490 303 59 7 chr4 100189575 100189727 -102138620 + L2 LINE L2 2645 2804 -510 523 224 132 54 chr4 100189788 100189993 -102138354 + L2 LINE L2 3093 3313 0 13705 25 1 0 chr4 100190856 100193297 -102135050 - L1PA3 LINE L1 0 6155 3758 270 182 0 0 chr4 100193581 100193636 -102134711 - MLT2B1 LTR ERVL -2 518 464 277 236 19 0 chr4 100193645 100193751 -102134596 + (TA)n Simple_repeat Simple_repeat 2 109 0 1521 254 73 9 chr4 100193753 100194178 -102134169 - MLT2B1 LTR ERVL -64 456 5 2007 213 55 0 chr4 100194783 100195187 -102133160 - MSTB LTR MaLR 0 426 1 610 267 186 19 chr4 100195878 100196088 -102132259 - MIR SINE MIR 0 262 18 21 82 0 0 chr4 100197155 100197204 -102131143 + AT_rich Low_complexity Low_complexity 1 49 0 2119 109 10 0 chr4 100199264 100199558 -102128789 - AluSx SINE Alu -15 297 1 620 233 29 24 chr4 100199701 100199907 -102128440 - L1ME3A LINE L1 -41 6129 5923 302 282 0 26 chr4 100200328 100200406 -102127941 + MIR SINE MIR 116 191 -71 267 133 0 0 chr4 100200491 100200536 -102127811 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 405 252 168 13 chr4 100201735 100201890 -102126457 - MIR SINE MIR -70 192 14 479 238 14 48 chr4 100202728 100202875 -102125472 + L2 LINE L2 3172 3313 0 182 255 78 0 chr4 100203631 100203682 -102124665 - MIR3 SINE MIR -19 189 135 318 316 105 8 chr4 100205196 100205329 -102123018 + L2 LINE L2 3127 3272 0 195 303 31 164 chr4 100206442 100206729 -102121618 + L2 LINE L2 3016 3264 -8 761 251 28 28 chr4 100208143 100208335 -102120012 + MLT1E1 LTR MaLR 1 195 -459 2046 149 30 25 chr4 100208335 100208697 -102119650 - THE1B LTR MaLR 0 364 1 761 251 28 28 chr4 100208697 100208719 -102119628 + MLT1E1 LTR MaLR 194 215 -439 274 303 13 0 chr4 100210244 100210320 -102118027 + MIR SINE MIR 132 208 -54 560 245 75 27 chr4 100211106 100211294 -102117053 - MLT1E3 LTR MaLR -72 552 356 221 283 0 0 chr4 100211319 100211372 -102116975 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 210 71 0 0 chr4 100211372 100211400 -102116947 + (TC)n Simple_repeat Simple_repeat 1 28 0 678 154 8 26 chr4 100213419 100213563 -102114784 - AluJo SINE Alu 0 309 168 665 189 33 0 chr4 100213565 100213687 -102114660 - AluJo SINE Alu -186 126 1 32 43 0 0 chr4 100214146 100214192 -102114155 + AT_rich Low_complexity Low_complexity 1 46 0 1062 194 33 4 chr4 100214891 100215133 -102113214 - L1MB5 LINE L1 0 6174 5926 300 200 0 0 chr4 100215548 100215613 -102112734 + T-rich Low_complexity Low_complexity 1 65 0 192 254 63 16 chr4 100218066 100218129 -102110218 - MIR SINE MIR -2 260 195 256 290 75 11 chr4 100218164 100218257 -102110090 + L2 LINE L2 3168 3266 -6 1179 196 73 51 chr4 100218567 100218842 -102109505 + AluJo SINE Alu 1 281 -31 25 65 0 0 chr4 100221968 100222014 -102106333 + AT_rich Low_complexity Low_complexity 1 46 0 232 245 35 126 chr4 100222912 100223031 -102105316 + MIR3 SINE MIR 68 174 -34 3721 187 59 18 chr4 100223031 100223824 -102104523 + LTR1B LTR ERV1 1 826 0 232 245 35 126 chr4 100223824 100223847 -102104500 + MIR3 SINE MIR 174 197 -11 284 338 81 7 chr4 100223998 100224146 -102104201 - MIR3 SINE MIR -9 199 41 845 293 62 5 chr4 100224168 100224540 -102103807 + MER113 DNA MER1_type? 7 399 -122 265 207 134 0 chr4 100225445 100225527 -102102820 + HAL1 LINE L1 51 143 -2364 895 308 71 48 chr4 100225605 100226397 -102101950 + HAL1 LINE L1 1579 2388 -119 181 325 70 26 chr4 100228507 100228621 -102099726 - MIR SINE MIR -51 211 93 213 337 90 67 chr4 100230238 100230659 -102097688 + L2 LINE L2 2545 2975 -339 367 280 53 45 chr4 100230834 100230966 -102097381 + L2 LINE L2 3181 3313 0 183 269 0 75 chr4 100235240 100235307 -102093040 + L2 LINE L2 3248 3309 -4 309 292 217 0 chr4 100235379 100235499 -102092848 - MIR SINE MIR -70 192 47 23 0 0 0 chr4 100238934 100238957 -102089390 + AT_rich Low_complexity Low_complexity 1 23 0 205 338 0 28 chr4 100239310 100239381 -102088966 + MIR SINE MIR 12 80 -182 288 0 0 0 chr4 100240028 100240060 -102088287 + (CA)n Simple_repeat Simple_repeat 2 33 0 2204 100 0 7 chr4 100242941 100243251 -102085096 - AluY SINE Alu 0 311 4 259 118 0 78 chr4 100243251 100243302 -102085045 - MIR SINE MIR -117 145 99 247 337 95 21 chr4 100243560 100243750 -102084597 - L3 LINE CR1 -11 1566 1363 2200 57 46 4 chr4 100243760 100244040 -102084307 - AluY SINE Alu -19 292 1 326 264 6 119 chr4 100244815 100244974 -102083373 - MIR SINE MIR -28 234 94 294 29 0 0 chr4 100245069 100245104 -102083243 + (TC)n Simple_repeat Simple_repeat 1 35 0 * 363 23 0 0 chr4 100245103 100245147 -102083200 + (CA)n Simple_repeat Simple_repeat 1 44 0 2102 110 4 0 chr4 100245536 100245843 -102082504 + AluSx SINE Alu 1 308 0 388 304 130 16 chr4 100245856 100246040 -102082307 + MIR SINE MIR 46 250 -12 368 143 45 98 chr4 100246554 100246666 -102081681 - L1ME1 LINE L1 -18 6148 6043 390 269 14 14 chr4 100246749 100246890 -102081457 - L1ME1 LINE L1 -116 6050 5910 240 0 75 0 chr4 100247334 100247374 -102080973 + (TTTTG)n Simple_repeat Simple_repeat 1 43 0 2396 54 0 3 chr4 100248707 100249004 -102079343 + AluY SINE Alu 1 296 -15 272 314 62 95 chr4 100249972 100250214 -102078133 + L2 LINE L2 2739 2972 -342 240 333 83 0 chr4 100250332 100250416 -102077931 + L2 LINE L2 3183 3273 -40 225 65 0 0 chr4 100250486 100250517 -102077830 + (TG)n Simple_repeat Simple_repeat 2 32 0 698 132 9 0 chr4 100250720 100250826 -102077521 + FLAM_A SINE Alu 16 122 -20 1740 162 3 18 chr4 100250830 100251150 -102077197 + AluJo SINE Alu 4 319 0 615 303 54 0 chr4 100251462 100251647 -102076700 + MIR SINE MIR 11 205 -57 222 182 55 0 chr4 100251652 100251707 -102076640 + (CATATA)n Simple_repeat Simple_repeat 5 62 0 21 0 0 0 chr4 100251918 100251939 -102076408 + AT_rich Low_complexity Low_complexity 1 21 0 493 239 0 0 chr4 100254628 100254720 -102073627 - Tigger7 DNA MER2_type -1 2486 2395 29 60 0 0 chr4 100256054 100256104 -102072243 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr4 100256316 100256344 -102072003 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 100257017 100257040 -102071307 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr4 100257219 100257245 -102071102 + AT_rich Low_complexity Low_complexity 1 26 0 230 216 20 0 chr4 100258934 100258985 -102069362 + L2 LINE L2 3262 3313 0 183 322 219 32 chr4 100259122 100259532 -102068815 - L2 LINE L2 -19 3294 2808 275 200 15 0 chr4 100259569 100259634 -102068713 + L1ME2 LINE L1 6079 6144 -20 320 332 43 58 chr4 100259677 100259885 -102068462 + L1MC4 LINE L1 7826 8030 -12 486 337 23 11 chr4 100261876 100262051 -102066296 - MER5A DNA MER1_type -1 188 12 3136 121 8 14 chr4 100262995 100263493 -102064854 - L1MC1 LINE L1 -19 6314 5820 189 94 0 0 chr4 100264016 100264048 -102064299 + (T)n Simple_repeat Simple_repeat 1 32 0 695 304 68 66 chr4 100264972 100265383 -102062964 + L3 LINE CR1 871 1282 -295 5010 113 25 8 chr4 100265523 100266276 -102062071 - Tigger1 DNA MER2_type -4 2414 1649 6513 134 9 0 chr4 100266277 100267264 -102061083 - Tigger1 DNA MER2_type -1372 1046 51 1042 156 2 0 chr4 100367266 100367946 -101960401 - ALR/Alpha Satellite centromeric 0 681 1 908 166 12 0 chr4 100367959 100368465 -101959882 - ALR/Alpha Satellite centromeric 0 512 1 1068 152 0 0 chr4 100368568 100369536 -101958811 - ALR/Alpha Satellite centromeric 0 968 1 1066 159 4 0 chr4 100369549 100371571 -101956776 - ALR/Alpha Satellite centromeric 0 2029 1 957 169 9 0 chr4 100371584 100372246 -101956101 - ALR/Alpha Satellite centromeric 0 667 1 1066 154 2 0 chr4 100372259 100373606 -101954741 - ALR/Alpha Satellite centromeric 0 1349 1 957 169 9 0 chr4 100373619 100374281 -101954066 - ALR/Alpha Satellite centromeric 0 667 1 1068 154 3 0 chr4 100374294 100375641 -101952706 - ALR/Alpha Satellite centromeric 0 1351 1 1066 159 1 0 chr4 100375654 100376605 -101951742 - ALR/Alpha Satellite centromeric 0 952 1 1285 121 72 0 chr4 100476605 100476812 -101851535 - MER46B DNA MER2_type -139 97 1 872 153 51 0 chr4 100476819 100476995 -101851352 + MER53 DNA DNA 3 187 -2 180 179 0 0 chr4 100479302 100479341 -101849006 + GA-rich Low_complexity Low_complexity 4 42 0 280 241 223 18 chr4 100481233 100481345 -101847002 - L2 LINE L2 0 3272 3138 21 0 0 0 chr4 100481855 100481876 -101846471 + AT_rich Low_complexity Low_complexity 1 21 0 849 296 105 70 chr4 100482055 100483006 -101845341 + L2 LINE L2 1968 2951 -363 222 37 0 0 chr4 100483110 100483137 -101845210 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr4 100483459 100483480 -101844867 + AT_rich Low_complexity Low_complexity 1 21 0 491 239 0 0 chr4 100486169 100486261 -101842086 - Tigger7 DNA MER2_type -1 2586 2495 3353 70 46 19 chr4 100486589 100487063 -101841284 + L1PB2 LINE L1 5663 6149 -2 505 307 23 45 chr4 100487984 100488196 -101840151 + MIR SINE MIR 2 207 -55 27 49 0 0 chr4 100488807 100488848 -101839499 + AT_rich Low_complexity Low_complexity 1 41 0 181 288 15 61 chr4 100490674 100490740 -101837607 + L2 LINE L2 3239 3301 -12 620 303 54 0 chr4 100491075 100491260 -101837087 - MIR SINE MIR -57 205 11 1745 155 3 18 chr4 100491572 100491892 -101836455 - AluJo SINE Alu 0 319 4 672 142 9 0 chr4 100491896 100492002 -101836345 - FLAM_A SINE Alu -20 122 16 243 61 0 0 chr4 100492205 100492238 -101836109 + (CA)n Simple_repeat Simple_repeat 2 34 0 235 333 83 0 chr4 100492308 100492392 -101835955 - L2 LINE L2 -40 3273 3183 269 314 62 95 chr4 100492510 100492752 -101835595 - L2 LINE L2 -342 2972 2739 2388 50 0 3 chr4 100493720 100494018 -101834329 - AluY SINE Alu -14 297 1 191 0 103 0 chr4 100495296 100495335 -101833012 + A-rich Low_complexity Low_complexity 1 43 0 392 269 14 14 chr4 100495779 100495920 -101832427 + L1ME1 LINE L1 5910 6050 -116 374 143 45 98 chr4 100496003 100496115 -101832232 + L1ME1 LINE L1 6043 6148 -18 394 304 130 16 chr4 100496629 100496813 -101831534 - MIR SINE MIR -12 250 46 2062 110 4 0 chr4 100496826 100497133 -101831214 - AluSx SINE Alu 0 308 1 294 50 0 0 chr4 100497522 100497562 -101830785 + (TG)n Simple_repeat Simple_repeat 1 40 0 * 330 26 0 0 chr4 100497561 100497600 -101830747 + (GA)n Simple_repeat Simple_repeat 1 39 0 316 270 6 119 chr4 100497695 100497854 -101830493 + MIR SINE MIR 94 234 -28 1179 196 73 51 chr4 100499564 100499839 -101828508 - AluJo SINE Alu -31 281 1 256 290 75 11 chr4 100500149 100500242 -101828105 - L2 LINE L2 -6 3266 3168 192 254 63 16 chr4 100500277 100500340 -101828007 + MIR SINE MIR 195 260 -2 300 200 0 0 chr4 100502794 100502859 -101825488 + A-rich Low_complexity Low_complexity 1 65 0 1044 198 33 4 chr4 100503274 100503516 -101824831 + L1MB5 LINE L1 5926 6174 0 32 43 0 0 chr4 100504215 100504261 -101824086 + AT_rich Low_complexity Low_complexity 1 46 0 679 170 20 15 chr4 100504720 100504988 -101823359 + AluJo SINE Alu 1 309 0 210 71 0 0 chr4 100507007 100507035 -101821312 + (GA)n Simple_repeat Simple_repeat 1 28 0 221 283 0 0 chr4 100507035 100507088 -101821259 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 560 245 75 27 chr4 100507113 100507301 -101821046 + MLT1E3 LTR MaLR 356 552 -72 274 303 13 0 chr4 100508087 100508163 -101820184 - MIR SINE MIR -54 208 132 771 251 28 28 chr4 100509691 100509713 -101818634 - MLT1E1 LTR MaLR -439 215 194 2032 152 30 25 chr4 100509713 100510075 -101818272 + THE1B LTR MaLR 1 364 0 771 251 28 28 chr4 100510075 100510267 -101818080 - MLT1E1 LTR MaLR -459 195 1 195 303 31 164 chr4 100511475 100511762 -101816585 - L2 LINE L2 -8 3264 3016 318 316 105 8 chr4 100512875 100513008 -101815339 - L2 LINE L2 0 3272 3127 182 255 78 0 chr4 100514522 100514573 -101813774 + MIR3 SINE MIR 135 189 -19 463 245 14 48 chr4 100515329 100515476 -101812871 - L2 LINE L2 0 3313 3172 223 247 10 93 chr4 100515737 100515834 -101812513 - L2 LINE L2 -17 3296 3208 1880 186 151 32 chr4 100515929 100516434 -101811913 + MLT1F1 LTR MaLR 3 567 0 15809 147 20 8 chr4 100516799 100519486 -101808861 - Tigger2 DNA MER2_type 0 2718 1 21 82 0 0 chr4 100521316 100521365 -101806982 + AT_rich Low_complexity Low_complexity 1 49 0 181 247 0 72 chr4 100521974 100522071 -101806276 + MER5C DNA MER1_type 217 306 -18 2119 109 10 0 chr4 100523425 100523719 -101804628 - AluSx SINE Alu -15 297 1 620 233 29 24 chr4 100523862 100524068 -101804279 - L1ME3A LINE L1 -41 6129 5923 302 282 0 26 chr4 100524489 100524567 -101803780 + MIR SINE MIR 116 191 -71 267 133 0 0 chr4 100524652 100524697 -101803650 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 394 258 168 13 chr4 100525897 100526052 -101802295 - MIR SINE MIR -70 192 14 610 267 186 19 chr4 100526968 100527178 -101801169 + MIR SINE MIR 18 262 0 2007 213 55 0 chr4 100527869 100528273 -101800074 + MSTB LTR MaLR 1 426 0 1537 252 73 9 chr4 100528878 100529303 -101799044 + MLT2B1 LTR ERVL 5 456 -64 277 236 19 0 chr4 100529305 100529411 -101798936 + (TA)n Simple_repeat Simple_repeat 2 109 0 272 170 0 0 chr4 100529424 100529477 -101798870 + MLT2B1 LTR ERVL 466 518 -2 13678 26 0 7 chr4 100529761 100532205 -101796142 + L1PA3 LINE L1 3758 6155 0 523 224 132 54 chr4 100533068 100533273 -101795074 - L2 LINE L2 0 3313 3093 490 303 59 7 chr4 100533334 100533486 -101794861 - L2 LINE L2 -510 2804 2645 398 281 87 70 chr4 100533546 100533902 -101794445 + MLT1I LTR MaLR 40 401 -8 427 250 120 0 chr4 100533910 100534018 -101794329 - L2 LINE L2 -678 2636 2516 754 157 14 21 chr4 100535960 100536100 -101792247 + MSTD LTR MaLR 1 139 -257 241 189 151 0 chr4 100536127 100536180 -101792167 + MSTD LTR MaLR 199 259 -137 3822 88 24 0 chr4 100536280 100536816 -101791531 - L1PB2 LINE L1 -94 6057 5509 267 256 45 13 chr4 100537516 100537617 -101790730 + MIR SINE MIR 91 199 -9 21 0 0 0 chr4 100538114 100538135 -101790212 + AT_rich Low_complexity Low_complexity 1 21 0 276 325 26 35 chr4 100539805 100539919 -101788428 + L2 LINE L2 3181 3293 -20 1352 184 3 25 chr4 100541773 100542055 -101786292 - AluJo SINE Alu -22 290 15 1743 188 102 8 chr4 100542542 100542904 -101785443 + MSTD LTR MaLR 1 396 0 22 0 0 0 chr4 100544394 100544416 -101783931 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 100546267 100546288 -101782059 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr4 100546387 100546432 -101781915 + AT_rich Low_complexity Low_complexity 1 45 0 597 235 150 51 chr4 100547639 100547873 -101780474 + MIR SINE MIR 6 262 0 363 200 138 15 chr4 100548244 100548374 -101779973 - MER103 DNA DNA -10 156 11 22 0 0 0 chr4 100548624 100548646 -101779701 + AT_rich Low_complexity Low_complexity 1 22 0 212 196 22 0 chr4 100549954 100550000 -101778347 - L2 LINE L2 -5 3308 3262 184 302 36 50 chr4 100553991 100554130 -101774217 + L2 LINE L2 3080 3216 -97 290 129 16 0 chr4 100554132 100554194 -101774153 + (TA)n Simple_repeat Simple_repeat 1 63 0 2126 110 0 3 chr4 100554194 100554484 -101773863 - AluSg SINE Alu -21 289 1 25 65 0 0 chr4 100554718 100554764 -101773583 + AT_rich Low_complexity Low_complexity 1 46 0 340 325 89 6 chr4 100554772 100554941 -101773406 - MIR SINE MIR -53 209 27 216 200 0 20 chr4 100555451 100555501 -101772846 + (TATG)n Simple_repeat Simple_repeat 2 50 0 183 129 32 0 chr4 100556537 100556568 -101771779 + MIR SINE MIR 120 151 -111 300 167 0 19 chr4 100559589 100559643 -101768704 - MIR SINE MIR -75 133 81 2351 63 3 7 chr4 100560109 100560411 -101767936 - AluY SINE Alu -10 301 1 1185 176 85 88 chr4 100560511 100560716 -101767631 - MLT1A2 LTR MaLR 0 374 169 2383 86 3 3 chr4 100560716 100561029 -101767318 - AluSq SINE Alu 0 313 1 1185 176 85 88 chr4 100561029 100561198 -101767149 - MLT1A2 LTR MaLR -205 169 1 25 0 0 0 chr4 100561752 100561777 -101766570 + AT_rich Low_complexity Low_complexity 1 25 0 219 140 18 70 chr4 100561937 100561994 -101766353 + GA-rich Low_complexity Low_complexity 1 54 0 561 260 36 35 chr4 100562509 100562895 -101765452 - LTR16A1 LTR ERVL 0 457 4 23 68 0 0 chr4 100563091 100563135 -101765212 + AT_rich Low_complexity Low_complexity 1 44 0 323 282 159 18 chr4 100563700 100563863 -101764484 + MIR SINE MIR 16 201 -61 522 236 93 84 chr4 100564014 100564239 -101764108 + MER102b DNA MER1_type 115 341 0 402 212 133 18 chr4 100564317 100564430 -101763917 + MIR SINE MIR 17 142 -66 196 146 49 0 chr4 100564464 100564505 -101763842 + MIR SINE MIR 95 137 -71 261 0 0 0 chr4 100565111 100565140 -101763207 + (A)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr4 100567615 100567636 -101760711 + AT_rich Low_complexity Low_complexity 1 21 0 308 154 77 0 chr4 100568795 100568860 -101759487 + L1MCa LINE L1 1995 2064 -4362 * 314 285 44 82 chr4 100568802 100568960 -101759387 - L1MC4 LINE L1 -1340 6702 6551 1752 171 3 3 chr4 100568966 100569258 -101759089 + AluJb SINE Alu 1 292 -20 24 0 0 0 chr4 100569261 100569285 -101759062 + AT_rich Low_complexity Low_complexity 1 24 0 43 49 0 12 chr4 100572627 100572647 -101755700 + AT_rich Low_complexity Low_complexity 1 20 -61 2003 112 17 10 chr4 100572647 100572942 -101755405 + AluSq SINE Alu 11 307 -6 43 49 0 12 chr4 100572942 100573003 -101755344 + AT_rich Low_complexity Low_complexity 20 81 0 297 309 64 0 chr4 100574980 100575090 -101753257 - MIR SINE MIR 0 262 146 261 83 0 0 chr4 100575569 100575605 -101752742 + (TA)n Simple_repeat Simple_repeat 2 37 0 2155 110 7 3 chr4 100575605 100575897 -101752450 - AluSx SINE Alu -19 293 1 27 0 0 0 chr4 100576676 100576703 -101751644 + AT_rich Low_complexity Low_complexity 1 27 0 1325 178 100 8 chr4 100580645 100580886 -101747461 + Tigger7 DNA MER2_type 2 264 -2223 513 218 0 10 chr4 100580886 100580987 -101747360 + Tigger7 DNA MER2_type 2392 2491 0 26 0 0 0 chr4 100581146 100581172 -101747175 + AT_rich Low_complexity Low_complexity 1 26 0 462 233 8 33 chr4 100583645 100583765 -101744582 - MIR SINE MIR -104 158 42 279 133 0 0 chr4 100585273 100585318 -101743029 + (CA)n Simple_repeat Simple_repeat 1 45 0 204 103 77 0 chr4 100585782 100585821 -101742526 + GA-rich Low_complexity Low_complexity 5 46 0 32 0 0 0 chr4 100588065 100588097 -101740250 + AT_rich Low_complexity Low_complexity 1 32 0 204 238 0 0 chr4 100588185 100588227 -101740120 + GA-rich Low_complexity Low_complexity 1 42 0 240 86 0 0 chr4 100588776 100588811 -101739536 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 469 262 87 7 chr4 100589989 100590138 -101738209 + MIR3 SINE MIR 41 201 -7 504 295 66 11 chr4 100590325 100590508 -101737839 + MIR SINE MIR 20 212 -50 658 220 144 0 chr4 100590578 100590751 -101737596 + MER3 DNA MER1_type 1 198 -11 407 249 54 65 chr4 100590880 100591065 -101737282 + L2 LINE L2 3121 3303 -10 693 242 33 97 chr4 100591520 100591850 -101736497 + L2 LINE L2 3005 3313 0 443 223 19 0 chr4 100592710 100592813 -101735534 - MLT1K LTR MaLR -2 586 482 760 171 97 23 chr4 100592827 100593002 -101735345 - MIR SINE MIR 0 262 75 642 283 145 31 chr4 100593087 100593405 -101734942 - MLT1K LTR MaLR -165 423 70 931 154 0 0 chr4 100594415 100594564 -101733783 - FAM SINE Alu -1 48 1 278 230 7 20 chr4 100594736 100594888 -101733459 + GA-rich Low_complexity Low_complexity 3 152 0 234 240 123 39 chr4 100596128 100596258 -101732089 + MLT1H LTR MaLR 285 533 -16 384 235 111 62 chr4 100596682 100596844 -101731503 - MIR SINE MIR -1 261 92 184 366 134 26 chr4 100596980 100597174 -101731173 - L2 LINE L2 -544 2770 2556 201 302 0 0 chr4 100597493 100597556 -101730791 + L2 LINE L2 3251 3313 0 539 317 11 65 chr4 100598934 100599196 -101729151 + MIR SINE MIR 13 260 -2 2113 133 12 12 chr4 100599293 100599625 -101728722 + MER7A DNA MER2_type 2 331 -15 696 122 0 0 chr4 100601159 100601266 -101727081 - L1PA13 LINE L1 -8 6155 6049 1396 104 5 5 chr4 100601268 100601469 -101726878 + L1PA12 LINE L1 5747 5947 -221 1571 154 121 0 chr4 100601824 100602129 -101726218 + MER2 DNA MER2_type 2 343 -1 240 100 0 0 chr4 100602446 100602486 -101725861 + (CA)n Simple_repeat Simple_repeat 2 41 0 263 245 0 0 chr4 100602710 100602763 -101725584 - MIR SINE MIR -66 142 90 312 337 16 33 chr4 100602863 100603047 -101725300 + MIR SINE MIR 66 246 -16 18972 170 47 64 chr4 100604419 100604777 -101723570 - L1MA5 LINE L1 0 7719 7356 1973 167 111 10 chr4 100604777 100605166 -101723181 + MSTA LTR MaLR 1 428 0 18972 170 47 64 chr4 100605166 100609450 -101718897 - L1MA5 LINE L1 -363 7356 2999 1383 236 11 3 chr4 100609450 100609734 -101718613 - AluJb SINE Alu -26 286 1 855 163 0 0 chr4 100609741 100609870 -101718477 - FLAM_C SINE Alu -14 129 1 18972 170 47 64 chr4 100609870 100612942 -101715405 - L1MA5 LINE L1 -4726 2993 19 6650 191 25 7 chr4 100612943 100614431 -101713916 - L1 LINE L1 -1769 5079 3565 6778 95 15 13 chr4 100614431 100620513 -101707834 - L1PA6 LINE L1 -2 6152 11 3179 217 16 33 chr4 100620524 100620655 -101707692 - L1 LINE L1 -3277 3571 3439 2428 67 0 3 chr4 100620655 100620954 -101707393 + AluY SINE Alu 1 298 -13 3179 217 16 33 chr4 100620954 100622230 -101706117 - L1 LINE L1 -3409 3439 2186 3166 143 13 6 chr4 100622258 100622791 -101705556 - L1PA16 LINE L1 -18 6148 5612 2013 159 56 8 chr4 100622804 100623446 -101704901 + L1PA16 LINE L1 4920 5598 -568 * 3233 193 34 50 chr4 100623438 100624287 -101704060 - L1 LINE L1 -4667 2182 1347 2181 117 0 7 chr4 100624462 100624762 -101703585 - AluSc SINE Alu -7 302 5 25 0 0 0 chr4 100625682 100625707 -101702640 + AT_rich Low_complexity Low_complexity 1 25 0 234 208 0 0 chr4 100625757 100625810 -101702537 + CT-rich Low_complexity Low_complexity 3 55 0 1144 188 80 16 chr4 100625812 100626062 -101702285 - AluJo SINE Alu 0 312 47 377 326 112 31 chr4 100626268 100626526 -101701821 + L3 LINE CR1 143 421 -1156 372 252 55 105 chr4 100627079 100627317 -101701030 + Charlie2 DNA MER1_type 98 323 -2459 1916 222 61 15 chr4 100627321 100628132 -101700215 + Charlie2 DNA MER1_type 1856 2862 0 30 69 0 0 chr4 100628543 100628601 -101699746 + AT_rich Low_complexity Low_complexity 1 58 0 217 387 0 0 chr4 100629631 100629706 -101698641 + L3 LINE CR1 1005 1079 -498 511 347 101 12 chr4 100629811 100630148 -101698199 + L3 LINE CR1 1095 1461 -116 245 318 54 16 chr4 100630337 100630466 -101697881 - L2 LINE L2 0 3272 3139 640 312 68 25 chr4 100630601 100631024 -101697323 + L2 LINE L2 2560 2997 -275 424 275 0 18 chr4 100631069 100631178 -101697169 - L2 LINE L2 -3 3310 3204 215 129 14 71 chr4 100631450 100631520 -101696827 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 221 0 35 0 chr4 100631548 100631577 -101696770 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 7635 18 0 0 chr4 100631579 100633239 -101695108 - L1PA2 LINE L1 -15 6140 4481 21 0 0 0 chr4 100633306 100633327 -101695020 + AT_rich Low_complexity Low_complexity 1 21 0 291 223 80 54 chr4 100635157 100635269 -101693078 + L2 LINE L2 3199 3313 0 4977 146 10 39 chr4 100635645 100636543 -101691804 + L1PA16 LINE L1 5294 6165 -1 255 218 18 0 chr4 100636636 100636691 -101691656 + CT-rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr4 100638473 100638496 -101689851 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr4 100638546 100638572 -101689775 + AT_rich Low_complexity Low_complexity 1 26 0 390 391 42 5 chr4 100640284 100640473 -101687874 - MIR SINE MIR -48 214 19 397 195 180 23 chr4 100640654 100640782 -101687565 + MIR SINE MIR 90 237 -25 569 303 68 9 chr4 100641245 100641466 -101686881 - MIR SINE MIR 0 262 29 351 0 0 0 chr4 100642304 100642343 -101686004 + (TG)n Simple_repeat Simple_repeat 2 40 0 301 248 50 58 chr4 100643561 100643682 -101684665 + L2 LINE L2 3186 3305 -8 2306 102 0 0 chr4 100644252 100644547 -101683800 - AluSx SINE Alu -17 295 1 22 0 0 0 chr4 100645535 100645557 -101682790 + AT_rich Low_complexity Low_complexity 1 22 0 210 37 0 0 chr4 100645827 100645854 -101682493 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2343 67 0 7 chr4 100645879 100646176 -101682171 - AluY SINE Alu -16 295 1 1281 247 73 85 chr4 100646857 100647040 -101681307 - Zaphod DNA AcHobo -2097 1934 1750 1745 137 56 51 chr4 100647040 100647413 -101680934 + THE1C LTR MaLR 1 375 0 1281 247 73 85 chr4 100647413 100647514 -101680833 - Zaphod DNA AcHobo -2281 1750 1649 913 114 0 132 chr4 100647514 100647684 -101680663 + L1MB3 LINE L1 5986 6122 -61 2405 78 0 0 chr4 100647684 100647979 -101680368 + AluY SINE Alu 5 299 -12 913 114 0 132 chr4 100647979 100648028 -101680319 + L1MB3 LINE L1 6122 6176 -7 1281 247 73 85 chr4 100648028 100648563 -101679784 - Zaphod DNA AcHobo -2382 1649 1124 534 192 29 0 chr4 100648576 100648680 -101679667 - FLAM_A SINE Alu -12 130 24 477 210 22 65 chr4 100648700 100648929 -101679418 - Zaphod DNA AcHobo -2925 1106 888 403 304 76 49 chr4 100649066 100649290 -101679057 + ERVL LTR ERVL 4793 5022 -742 555 268 0 14 chr4 100649464 100649602 -101678745 + ERVL LTR ERVL 5197 5332 -432 1039 269 171 26 chr4 100649807 100650309 -101678038 + LTR50 LTR ERVL 213 787 -8 1727 249 91 36 chr4 100650346 100651131 -101677216 - Zaphod DNA AcHobo -3162 869 3 25 51 0 0 chr4 100652103 100652142 -101676205 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr4 100652237 100652263 -101676084 + AT_rich Low_complexity Low_complexity 1 26 0 2518 43 0 10 chr4 100652485 100652786 -101675561 - AluY SINE Alu -13 298 1 508 297 36 31 chr4 100653928 100654123 -101674224 + MIR SINE MIR 2 197 -65 680 229 45 25 chr4 100654377 100654534 -101673813 - FRAM SINE Alu -6 160 1 23 33 0 0 chr4 100654889 100654919 -101673428 + AT_rich Low_complexity Low_complexity 1 30 0 1051 154 50 23 chr4 100654988 100655208 -101673139 - L1MB8 LINE L1 -10 6168 5943 341 305 120 37 chr4 100655346 100655697 -101672650 - L1M4 LINE L1 -3650 2496 2117 22 0 0 0 chr4 100656055 100656077 -101672270 + AT_rich Low_complexity Low_complexity 1 22 0 340 200 217 17 chr4 100656278 100656398 -101671949 + MIR SINE MIR 17 160 -102 216 327 125 49 chr4 100656562 100656889 -101671458 + L2 LINE L2 2027 2378 -936 180 0 0 0 chr4 100656901 100656921 -101671426 + (TTG)n Simple_repeat Simple_repeat 2 21 0 992 161 0 0 chr4 100656923 100657066 -101671281 - FRAM SINE Alu -30 146 4 4787 133 54 42 chr4 100657102 100657981 -101670366 + L1PA15 LINE L1 4448 5347 -818 1885 155 44 0 chr4 100657981 100658278 -101670069 + AluSg SINE Alu 1 310 0 4787 133 54 42 chr4 100658278 100659108 -101669239 + L1PA15 LINE L1 5347 6165 0 192 275 75 50 chr4 100659908 100659988 -101668359 - MIR SINE MIR -83 179 98 235 286 33 0 chr4 100660968 100661059 -101667288 + (TA)n Simple_repeat Simple_repeat 2 95 0 1141 175 49 22 chr4 100661079 100661302 -101667045 + AluJo SINE Alu 74 302 -10 21 36 0 0 chr4 100661321 100661349 -101666998 + AT_rich Low_complexity Low_complexity 1 28 0 408 132 0 92 chr4 100661374 100661450 -101666897 - LTR33 LTR ERVL -8 513 445 810 288 12 21 chr4 100661563 100661803 -101666544 - LTR33 LTR ERVL -283 238 1 1522 237 66 72 chr4 100663169 100663714 -101664633 - MLT1F1 LTR MaLR 0 567 1 219 294 37 28 chr4 100663716 100663825 -101664522 + L2 LINE L2 2292 2401 -913 222 37 0 0 chr4 100663869 100663896 -101664451 + (TG)n Simple_repeat Simple_repeat 1 27 0 732 309 57 9 chr4 100665904 100666300 -101662047 + L2 LINE L2 1233 1706 -1608 276 282 13 0 chr4 100666988 100667066 -101661281 + MIR3 SINE MIR 125 203 -5 587 279 70 25 chr4 100667123 100667324 -101661023 - MIR SINE MIR -38 224 15 898 352 101 30 chr4 100668967 100669934 -101658413 + L2 LINE L2 2269 3308 -5 594 204 134 0 chr4 100670141 100670313 -101658034 + L1MA9 LINE L1 6074 6268 -44 371 314 55 55 chr4 100670911 100671166 -101657181 - L2 LINE L2 -1 3312 3058 780 200 38 6 chr4 100671173 100671333 -101657014 - MLT1C LTR MaLR -3 464 300 3994 176 19 3 chr4 100671453 100672271 -101656076 - L1MA9 LINE L1 -285 6027 5197 2175 110 3 7 chr4 100673037 100673345 -101655002 + AluSq SINE Alu 7 313 0 1477 192 8 0 chr4 100674279 100674534 -101653813 + AluJo SINE Alu 1 257 -55 270 0 0 0 chr4 100674535 100674565 -101653782 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 1152 290 47 62 chr4 100675043 100675465 -101652882 - MLT1E LTR MaLR -4 589 177 2223 104 0 3 chr4 100675465 100675764 -101652583 - AluSc SINE Alu -11 298 1 1152 290 47 62 chr4 100675764 100675937 -101652410 - MLT1E LTR MaLR -416 177 3 1078 281 60 26 chr4 100676129 100676513 -101651834 + LTR16A LTR ERVL 52 448 -2 1098 237 157 94 chr4 100676613 100677390 -101650957 - LTR1B LTR ERV1 0 826 1 375 215 118 0 chr4 100678180 100678273 -101650074 + LTR33A LTR ERVL 137 240 -283 525 219 67 18 chr4 100678311 100678475 -101649872 + LTR33A LTR ERVL 327 498 -25 226 324 29 81 chr4 100678591 100678665 -101649682 - MIR SINE MIR -112 150 84 750 272 88 4 chr4 100678665 100678904 -101649443 + MIR SINE MIR 4 262 0 15100 149 20 36 chr4 100680161 100680926 -101647421 - Tigger2 DNA MER2_type -44 2674 1898 7155 48 11 0 chr4 100680926 100681949 -101646398 - L1PA7 LINE L1 0 6154 5127 15100 149 20 36 chr4 100681949 100683898 -101644449 - Tigger2 DNA MER2_type -820 1898 4 217 395 0 0 chr4 100684567 100684643 -101643704 - MIR3 SINE MIR -48 160 85 219 337 122 6 chr4 100684786 100684967 -101643380 + MIR SINE MIR 49 250 -12 21 57 0 0 chr4 100685356 100685391 -101642956 + AT_rich Low_complexity Low_complexity 1 35 0 309 335 138 5 chr4 100685917 100686135 -101642212 - MIR SINE MIR -14 248 2 26 0 0 0 chr4 100686157 100686183 -101642164 + AT_rich Low_complexity Low_complexity 1 26 0 245 361 78 30 chr4 100687326 100687492 -101640855 + MER5A DNA MER1_type 16 189 0 1471 291 135 49 chr4 100687635 100688039 -101640308 + L2 LINE L2 1813 2181 -1132 1626 171 24 24 chr4 100688039 100688331 -101640016 + AluSx SINE Alu 1 292 -20 1471 291 135 49 chr4 100688331 100689314 -101639033 + L2 LINE L2 2181 3313 0 1815 143 12 100 chr4 100690103 100690502 -101637845 + THE1B LTR MaLR 1 364 0 11437 92 13 6 chr4 100690502 100692070 -101636277 + THE1B-int LTR MaLR 1 1580 0 2121 133 51 20 chr4 100692070 100692423 -101635924 + THE1B LTR MaLR 1 364 0 399 54 0 0 chr4 100693350 100693406 -101634941 - L1PA6 LINE L1 -1 6153 6098 30 27 0 0 chr4 100695404 100695441 -101632906 + AT_rich Low_complexity Low_complexity 1 37 0 342 277 30 20 chr4 100695538 100695639 -101632708 + HERV16 LTR ERVL 2738 2839 -2157 32 26 0 0 chr4 100696011 100696050 -101632297 + AT_rich Low_complexity Low_complexity 1 39 0 2793 235 69 33 chr4 100696136 100696894 -101631453 + MER21B LTR ERV1 19 803 -60 272 287 220 20 chr4 100696973 100697123 -101631224 - MIR SINE MIR -59 203 24 2179 118 10 0 chr4 100697428 100697733 -101630614 - AluSg1 SINE Alu -1 308 1 7204 33 1 6 chr4 100698541 100699935 -101628412 - L1PA5 LINE L1 -5 6149 4743 9373 36 0 0 chr4 100699935 100701089 -101627258 + L1P LINE L1 2706 3859 -2287 3176 220 50 40 chr4 100701258 100702200 -101626147 + L1MC3 LINE L1 6835 7785 0 293 254 0 0 chr4 100702389 100702452 -101625895 + L2 LINE L2 3251 3313 0 21 0 0 0 chr4 100703097 100703118 -101625229 + AT_rich Low_complexity Low_complexity 1 21 0 419 264 51 39 chr4 100703803 100703981 -101624366 + MER5A DNA MER1_type 6 185 -4 21 0 0 0 chr4 100704134 100704155 -101624192 + AT_rich Low_complexity Low_complexity 1 21 0 310 240 35 41 chr4 100704716 100704821 -101623526 + MIR SINE MIR 68 176 -32 306 296 52 17 chr4 100706489 100706604 -101621743 + L2 LINE L2 3189 3307 -6 449 238 25 138 chr4 100707615 100707689 -101620658 - MLT1K LTR MaLR -8 580 499 2130 134 73 14 chr4 100707689 100708033 -101620314 + THE1B LTR MaLR 1 364 0 449 238 25 138 chr4 100708033 100708240 -101620107 - MLT1K LTR MaLR -89 499 331 235 275 50 90 chr4 100708487 100708687 -101619660 + L1M4 LINE L1 16 207 -6335 224 300 25 0 chr4 100709867 100709947 -101618400 + (TATATG)n Simple_repeat Simple_repeat 4 85 0 1911 134 3 7 chr4 100711612 100711895 -101616452 - AluSx SINE Alu -30 282 1 291 326 33 11 chr4 100712425 100712517 -101615830 + L2 LINE L2 3188 3281 -32 632 286 28 42 chr4 100713517 100713734 -101614613 - MIR SINE MIR -2 260 47 909 272 34 73 chr4 100714537 100714975 -101613372 + MLT1J1 LTR MaLR 1 421 -25 715 332 25 27 chr4 100715098 100715465 -101612882 + LTR16B LTR ERVL 3 368 -96 2662 158 27 2 chr4 100715655 100716105 -101612242 - MLT1C LTR MaLR -5 462 2 1720 200 126 19 chr4 100716418 100716847 -101611500 + MLT2B1 LTR ERVL 1 486 -34 192 77 0 0 chr4 100716847 100716873 -101611474 + (TCTA)n Simple_repeat Simple_repeat 4 29 0 1720 200 126 19 chr4 100716873 100716913 -101611434 + MLT2B1 LTR ERVL 486 520 0 1321 219 86 20 chr4 100716936 100717287 -101611060 + ERVL-B1 LTR ERVL 22 395 -5369 282 350 49 0 chr4 100717339 100717462 -101610885 - MIR SINE MIR -10 252 124 5369 199 53 0 chr4 100717469 100718455 -101609892 + ERVL-B1 LTR ERVL 417 1454 -4310 887 240 10 29 chr4 100718455 100718659 -101609688 + MER8 DNA MER2_type 1 200 -39 475 125 28 0 chr4 100718668 100718740 -101609607 - Tigger2 DNA MER2_type -2644 74 1 15984 181 30 28 chr4 100718741 100720865 -101607482 + ERVL-B1 LTR ERVL 1454 3590 -2174 2342 163 26 9 chr4 100720865 100721288 -101607059 - MSTB1 LTR MaLR -2 430 1 15984 181 30 28 chr4 100721288 100722163 -101606184 + ERVL-B1 LTR ERVL 3590 4461 -1303 368 230 0 0 chr4 100722166 100722240 -101606107 + AluJ/FRAM SINE Alu 225 298 -4 18115 99 7 2 chr4 100722279 100725730 -101602617 + L1PA7 LINE L1 2676 6152 -2 24 67 0 0 chr4 100725839 100725884 -101602463 + AT_rich Low_complexity Low_complexity 1 45 0 258 231 0 0 chr4 100726357 100726422 -101601925 + GA-rich Low_complexity Low_complexity 4 68 0 205 303 53 13 chr4 100727280 100727356 -101600991 + MIR SINE MIR 1 79 -183 25 0 0 0 chr4 100727366 100727391 -101600956 + AT_rich Low_complexity Low_complexity 1 25 0 2106 36 4 0 chr4 100727403 100727655 -101600692 - L1PA3 LINE L1 -5 6150 5898 379 293 24 37 chr4 100727670 100727776 -101600571 + MIR SINE MIR 99 204 -58 961 196 53 19 chr4 100727776 100727985 -101600362 - MER20 DNA MER1_type 0 219 4 379 293 24 37 chr4 100727985 100728042 -101600305 + MIR SINE MIR 204 260 -2 282 29 0 0 chr4 100728235 100728270 -101600077 + (CA)n Simple_repeat Simple_repeat 2 36 0 851 159 146 30 chr4 100729238 100729471 -101598876 + L1MB8 LINE L1 5916 6175 -3 2299 208 24 28 chr4 100729491 100729996 -101598351 - LTR40a LTR ERVL -14 505 3 716 326 135 20 chr4 100730432 100730831 -101597516 - MLT1J LTR MaLR -64 447 3 25 105 0 0 chr4 100731423 100731518 -101596829 + AT_rich Low_complexity Low_complexity 1 95 0 270 294 163 12 chr4 100731719 100731879 -101596468 - MIR SINE MIR 0 262 79 263 331 60 8 chr4 100733076 100733209 -101595138 + L2 LINE L2 3158 3297 -16 337 305 38 30 chr4 100733457 100733588 -101594759 + MIR SINE MIR 10 141 -121 977 304 36 18 chr4 100734855 100735191 -101593156 + LTR16C LTR ERVL 150 491 0 258 200 18 0 chr4 100735266 100735321 -101593026 + (TTCA)n Simple_repeat Simple_repeat 3 58 0 1907 166 0 25 chr4 100735387 100735707 -101592640 + AluSx SINE Alu 1 312 0 24 32 0 0 chr4 100736350 100736381 -101591966 + AT_rich Low_complexity Low_complexity 1 31 0 180 256 47 0 chr4 100736536 100736579 -101591768 - L3 LINE CR1 -30 1547 1503 27 0 0 0 chr4 100737501 100737528 -101590819 + AT_rich Low_complexity Low_complexity 1 27 0 2484 67 0 0 chr4 100737749 100738049 -101590298 - AluY SINE Alu -11 300 1 182 206 0 0 chr4 100738405 100738439 -101589908 - MIR SINE MIR -12 250 217 215 246 62 0 chr4 100739418 100739483 -101588864 - MIR SINE MIR -80 182 114 236 333 99 18 chr4 100740139 100740310 -101588037 + MIR SINE MIR 71 255 -7 249 311 54 0 chr4 100740373 100740447 -101587900 + L2 LINE L2 3171 3248 -24 325 329 36 50 chr4 100740459 100740678 -101587669 + L2 LINE L2 2837 3052 -261 201 121 0 0 chr4 100740682 100740715 -101587632 + (CA)n Simple_repeat Simple_repeat 2 34 0 1270 211 163 88 chr4 100740730 100741313 -101587034 + MER76 LTR ERV 4 630 -58 432 299 24 30 chr4 100741337 100741504 -101586843 + L2 LINE L2 3128 3293 -20 1605 158 0 0 chr4 100741857 100742104 -101586243 - AluSx SINE Alu -24 288 42 918 199 90 20 chr4 100742238 100742439 -101585908 + MER58C DNA MER1_type 1 215 0 2623 283 91 41 chr4 100743051 100743694 -101584653 - L2 LINE L2 -7 3306 2696 2293 140 42 15 chr4 100743694 100744094 -101584253 + LTR57 LTR ERVL 1 411 0 2623 283 91 41 chr4 100744094 100744819 -101583528 - L2 LINE L2 -617 2696 1858 690 301 168 8 chr4 100745367 100745749 -101582598 - L2 LINE L2 -1558 1756 1314 2332 98 0 16 chr4 100746135 100746452 -101581895 + AluSx SINE Alu 1 312 0 259 307 35 44 chr4 100747412 100747526 -101580821 + MIR3 SINE MIR 91 203 -5 536 286 75 51 chr4 100747755 100747914 -101580433 - L2 LINE L2 0 3313 3142 351 0 0 0 chr4 100747914 100747953 -101580394 + (TG)n Simple_repeat Simple_repeat 2 40 0 536 286 75 51 chr4 100747953 100748087 -101580260 - L2 LINE L2 -171 3142 3013 197 226 0 19 chr4 100748186 100748239 -101580108 - L2 LINE L2 -103 3210 3159 380 333 12 37 chr4 100748261 100748423 -101579924 + MIR SINE MIR 38 195 -67 21 71 0 0 chr4 100748719 100748761 -101579586 + AT_rich Low_complexity Low_complexity 1 42 0 185 71 0 0 chr4 100751095 100751123 -101577224 + L2 LINE L2 3285 3312 -1 381 345 78 17 chr4 100751386 100751618 -101576729 + MLT1H LTR MaLR 127 372 -177 249 290 0 0 chr4 100751724 100751786 -101576561 + CT-rich Low_complexity Low_complexity 4 65 0 208 200 0 22 chr4 100751792 100751837 -101576510 - MIR SINE MIR 0 262 219 376 179 21 0 chr4 100752324 100752336 -101576011 + (TA)n Simple_repeat Simple_repeat 1 11 -86 2361 78 0 0 chr4 100752336 100752631 -101575716 + AluY SINE Alu 1 295 -16 376 179 21 0 chr4 100752631 100752713 -101575634 + (TA)n Simple_repeat Simple_repeat 11 97 0 1138 235 133 26 chr4 100752719 100753409 -101574938 - L1MC5 LINE L1 -49 7912 7149 7821 196 35 12 chr4 100753417 100756050 -101572297 - L1PA16 LINE L1 -9 6157 3452 1828 152 3 50 chr4 100756050 100756372 -101571975 - AluSx SINE Alu -5 307 1 7821 196 35 12 chr4 100756372 100756568 -101571779 - L1PA16 LINE L1 -2714 3452 3262 8349 202 24 15 chr4 100756746 100757271 -101571076 - L1PA15-16 LINE L1 -2147 4702 4183 1958 134 3 50 chr4 100757271 100757592 -101570755 - AluSx SINE Alu -6 306 1 8349 202 24 15 chr4 100757592 100760203 -101568144 - L1PA15-16 LINE L1 -2666 4183 1532 1131 215 92 65 chr4 100760261 100760769 -101567578 - L1MC5 LINE L1 -866 7095 6559 771 269 31 0 chr4 100761248 100761441 -101566906 + MLT1F LTR MaLR 24 222 -320 578 364 45 15 chr4 100761624 100762028 -101566319 - ERVL LTR ERVL -4587 1177 762 449 288 128 8 chr4 100762613 100762870 -101565477 - LTR50 LTR ERVL -8 787 500 545 241 119 41 chr4 100762953 100763178 -101565169 - LTR50 LTR ERVL -307 216 1 1501 248 58 21 chr4 100763808 100763838 -101564509 - L1M4 LINE L1 -544 5640 5613 1605 184 0 70 chr4 100763838 100764154 -101564193 - AluJo SINE Alu -18 294 1 1501 248 58 21 chr4 100764154 100764885 -101563462 - L1M4 LINE L1 -571 5613 4846 43704 41 1 4 chr4 100764885 100771048 -101557299 + L1PA3 LINE L1 3 6150 -5 4884 225 71 20 chr4 100771054 100772706 -101555641 - L1M4 LINE L1 -1286 4860 3125 271 247 94 0 chr4 100772885 100772970 -101555377 - Tigger5 DNA MER2_type 0 2323 2231 379 336 87 0 chr4 100773389 100773538 -101554809 - MIR SINE MIR -49 213 52 212 184 0 0 chr4 100774570 100774608 -101553739 + A-rich Low_complexity Low_complexity 1 38 0 1497 185 61 12 chr4 100776128 100776568 -101551779 - MLT2B2 LTR ERVL 0 515 1 218 328 82 16 chr4 100776754 100776876 -101551471 + MIR SINE MIR 83 212 -50 562 261 105 0 chr4 100777423 100777576 -101550771 - LTR67 LTR ERVL -2 555 387 728 300 93 13 chr4 100778587 100778887 -101549460 + L2 LINE L2 2928 3251 -62 868 185 130 0 chr4 100778897 100779081 -101549266 + MER3 DNA MER1_type 2 209 0 318 50 0 0 chr4 100779906 100779946 -101548401 + (CA)n Simple_repeat Simple_repeat 1 40 0 402 57 0 0 chr4 100780871 100780924 -101547423 + (TG)n Simple_repeat Simple_repeat 2 54 0 1138 201 124 55 chr4 100781010 100781373 -101546974 - MLT1B LTR MaLR -2 388 1 22 0 0 0 chr4 100781724 100781746 -101546601 + AT_rich Low_complexity Low_complexity 1 22 0 2870 217 50 45 chr4 100781996 100782769 -101545578 - L1MA9 LINE L1 -38 6274 5498 4407 172 66 26 chr4 100782771 100783789 -101544558 - L1MA9 LINE L1 -789 5357 4300 29 47 0 0 chr4 100784813 100784856 -101543491 + AT_rich Low_complexity Low_complexity 1 43 0 906 219 79 74 chr4 100785331 100785697 -101542650 + MLT1D LTR MaLR 3 370 -135 559 309 96 21 chr4 100785672 100785974 -101542373 - MLT1E1 LTR MaLR -248 345 1 * 2413 59 0 26 chr4 100786500 100786804 -101541543 + AluY SINE Alu 2 297 -14 1717 160 110 38 chr4 100787843 100788047 -101540300 + MSTA LTR MaLR 1 189 -239 225 83 0 0 chr4 100788047 100788083 -101540264 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 1717 160 110 38 chr4 100788083 100788277 -101540070 + MSTA LTR MaLR 189 428 0 1069 241 41 14 chr4 100788980 100789274 -101539073 - MER33 DNA MER1_type -22 302 1 3840 243 133 57 chr4 100789311 100791254 -101537093 - L1MDa LINE L1 -4413 2127 37 233 347 14 0 chr4 100793146 100793218 -101535129 - L2 LINE L2 0 3313 3241 218 244 0 33 chr4 100793637 100793727 -101534620 + T-rich Low_complexity Low_complexity 1 87 0 438 20 0 0 chr4 100793797 100793848 -101534499 + (TG)n Simple_repeat Simple_repeat 2 52 0 24 0 0 0 chr4 100793952 100793976 -101534371 + AT_rich Low_complexity Low_complexity 1 24 0 317 257 78 20 chr4 100794275 100794419 -101533928 + MLT1G1 LTR MaLR 214 330 -212 254 209 81 23 chr4 100794490 100794576 -101533771 + MLT1G1 LTR MaLR 465 555 0 798 341 24 12 chr4 100794856 100795005 -101533342 + LTR16B LTR ERVL 3 149 -315 1424 202 60 14 chr4 100795005 100795352 -101532995 - MLT1A1 LTR MaLR 0 365 3 798 341 24 12 chr4 100795352 100795536 -101532811 + LTR16B LTR ERVL 149 340 -124 222 297 40 14 chr4 100795882 100795956 -101532391 - L2 LINE L2 -558 2756 2681 333 374 7 19 chr4 100796144 100796299 -101532048 - MIR SINE MIR -98 164 12 263 133 200 40 chr4 100796559 100796634 -101531713 - L2 LINE L2 -5 3308 3222 1496 186 43 11 chr4 100796634 100796914 -101531433 + AluJo SINE Alu 1 289 -23 921 276 178 35 chr4 100798817 100799564 -101528783 + L1MC4 LINE L1 7189 8042 0 503 308 40 82 chr4 100800386 100800451 -101527896 + L1M4 LINE L1 3790 3856 -2290 1744 181 16 30 chr4 100800451 100800821 -101527526 + MLT1A1 LTR MaLR 1 365 0 503 308 40 82 chr4 100800821 100801257 -101527090 + L1M4 LINE L1 3856 4271 -1875 1551 200 7 0 chr4 100801257 100801537 -101526810 - AluJb SINE Alu -22 290 9 503 308 40 82 chr4 100801537 100801557 -101526790 + L1M4 LINE L1 4271 4290 -1856 270 197 99 0 chr4 100801610 100801681 -101526666 + L1ME LINE L1 5725 5802 -319 1096 236 51 51 chr4 100801868 100802258 -101526089 + MLT1B LTR MaLR 1 390 0 315 296 25 0 chr4 100802353 100802434 -101525913 + L2 LINE L2 1522 1604 -1710 1270 319 56 6 chr4 100802458 100802974 -101525373 + L2 LINE L2 2518 3055 -258 426 198 35 0 chr4 100802977 100803063 -101525284 + MLT1C LTR MaLR 1 89 -378 13371 194 50 20 chr4 100803350 100803531 -101524816 + L1M4 LINE L1 5 179 -7386 1923 137 3 3 chr4 100803531 100803816 -101524531 - AluSx SINE Alu -27 285 1 13371 194 50 20 chr4 100803816 100808920 -101519427 + L1M4 LINE L1 179 4860 -2705 8980 158 27 24 chr4 100809434 100809672 -101518675 + L1MA3 LINE L1 4850 5086 -2638 189 0 0 0 chr4 100809672 100809693 -101518654 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 8980 158 27 24 chr4 100809693 100810857 -101517490 + L1MA3 LINE L1 5086 6245 -1479 1140 168 157 27 chr4 100810857 100811119 -101517228 - AluSg SINE Alu -4 296 1 8980 158 27 24 chr4 100811119 100812410 -101515937 + L1MA3 LINE L1 6245 7550 -174 4805 128 35 9 chr4 100812410 100813170 -101515177 + LTR17 LTR ERV1 1 780 0 8980 158 27 24 chr4 100813170 100813279 -101515068 + L1MA3 LINE L1 7550 7657 -67 21 0 0 0 chr4 100813296 100813317 -101515030 + AT_rich Low_complexity Low_complexity 1 21 0 858 278 34 37 chr4 100813321 100813703 -101514644 + L1MEc LINE L1 1531 1911 -4485 5974 80 19 8 chr4 100813721 100814555 -101513792 - L1PA8A LINE L1 -3 6128 5286 338 245 29 10 chr4 100814552 100814654 -101513693 - L1ME LINE L1 -473 5693 5590 * 575 179 93 113 chr4 100814650 100814955 -101513392 - L1M4 LINE L1 -3653 2493 2195 2356 84 3 0 chr4 100814955 100815253 -101513094 + AluY SINE Alu 1 299 -12 575 179 93 113 chr4 100815253 100815311 -101513036 - L1M4 LINE L1 -3951 2195 2137 22 70 0 0 chr4 100815366 100815409 -101512938 + AT_rich Low_complexity Low_complexity 1 43 0 796 273 86 14 chr4 100815422 100815821 -101512526 + L1MEc LINE L1 2178 2560 -3655 * 1244 194 27 57 chr4 100815817 100816188 -101512159 + L1MB8 LINE L1 5592 5951 -233 * 6194 175 17 23 chr4 100816180 100816253 -101512094 + L1PB4 LINE L1 4020 4092 -2064 2308 95 0 3 chr4 100816253 100816558 -101511789 - AluY SINE Alu -7 304 1 6194 175 17 23 chr4 100816558 100816823 -101511524 + L1PB4 LINE L1 4092 4357 -1799 3418 70 2 4 chr4 100816823 100817281 -101511066 + L1PA10 LINE L1 5709 6165 -3 6194 175 17 23 chr4 100817281 100819090 -101509257 + L1PB4 LINE L1 4357 6156 0 349 208 0 0 chr4 100819281 100819358 -101508989 + L1MB8 LINE L1 6101 6177 -1 257 307 114 0 chr4 100819468 100819582 -101508765 + MLT1J2 LTR MaLR 42 168 -282 256 301 53 18 chr4 100819679 100819792 -101508555 + MLT1I LTR MaLR 293 409 0 22 0 0 0 chr4 100820099 100820121 -101508226 + AT_rich Low_complexity Low_complexity 1 22 0 258 370 172 16 chr4 100820565 100820938 -101507409 + L2 LINE L2 324 754 -2560 781 244 122 4 chr4 100821002 100821264 -101507083 + L1ME3A LINE L1 5869 6161 -9 303 344 0 0 chr4 100821285 100821381 -101506966 + MIR SINE MIR 48 143 -119 180 0 0 0 chr4 100822077 100822097 -101506250 + (A)n Simple_repeat Simple_repeat 1 20 0 21 57 0 0 chr4 100822747 100822782 -101505565 + AT_rich Low_complexity Low_complexity 1 35 0 428 330 52 23 chr4 100825754 100825927 -101502420 - MIR SINE MIR -56 206 29 2288 86 0 3 chr4 100825992 100826294 -101502053 - AluY SINE Alu -10 301 1 21 0 0 0 chr4 100826960 100826981 -101501366 + AT_rich Low_complexity Low_complexity 1 21 0 3175 164 26 33 chr4 100827114 100827723 -101500624 - MER6A DNA MER2_type 0 605 1 197 325 38 12 chr4 100827819 100827899 -101500448 - L2 LINE L2 0 3313 3232 21 0 0 0 chr4 100827999 100828020 -101500327 + AT_rich Low_complexity Low_complexity 1 21 0 2305 88 3 10 chr4 100828661 100828968 -101499379 - AluY SINE Alu -6 305 1 184 394 0 0 chr4 100829127 100829221 -101499126 - MIR SINE MIR -12 250 157 506 322 78 25 chr4 100829429 100829712 -101498635 + MLT1J LTR MaLR 117 414 -97 4539 120 26 46 chr4 100830991 100831757 -101496590 - MER4E LTR ERV1 -11 768 18 927 309 73 29 chr4 100831971 100832379 -101495968 + MLT1G1 LTR MaLR 2 427 -168 40629 63 8 1 chr4 100832458 100838563 -101489784 + L1PA5 LINE L1 11 6154 0 284 233 0 47 chr4 100838572 100838658 -101489689 + MLT1G1 LTR MaLR 466 547 -2 1123 296 22 27 chr4 100839848 100840250 -101488097 + LTR16C LTR ERVL 92 491 0 1525 199 35 32 chr4 100840380 100840757 -101487590 - MER39 LTR ERV1 0 707 330 244 204 395 33 chr4 100840801 100840953 -101487394 - MER39 LTR ERV1 -497 210 4 2358 93 0 0 chr4 100841472 100841774 -101486573 - AluY SINE Alu -9 302 1 1668 127 35 13 chr4 100843340 100843656 -101484691 - L1MA5 LINE L1 0 6300 5978 655 114 38 83 chr4 100843793 100843925 -101484422 - L1PA7 LINE L1 0 6154 6029 192 336 164 39 chr4 100845402 100845530 -101482817 + MIR3 SINE MIR 7 150 -58 2330 68 3 0 chr4 100845761 100846055 -101482292 + AluY SINE Alu 1 295 -16 270 307 88 26 chr4 100847666 100847780 -101480567 - L2 LINE L2 0 3272 3152 2042 325 118 25 chr4 100847788 100849348 -101478999 - L2 LINE L2 -1 3312 1617 1927 237 52 19 chr4 100849478 100850001 -101478346 - MLT1F LTR MaLR -2 540 1 328 272 85 77 chr4 100850496 100850742 -101477605 + MIR SINE MIR 12 259 -3 599 186 0 0 chr4 100851542 100851639 -101476708 - FLAM_A SINE Alu -28 114 18 1078 126 162 10 chr4 100852061 100852259 -101476088 + MER4B LTR ERV1 1 228 -382 * 1845 103 28 44 chr4 100852250 100852277 -101476070 + MER4E LTR ERV1 451 477 -289 2209 113 6 0 chr4 100852277 100852588 -101475759 + AluSp SINE Alu 1 313 0 1845 103 28 44 chr4 100852588 100852881 -101475466 + MER4E LTR ERV1 477 766 0 524 287 7 22 chr4 100853411 100853547 -101474800 + MER91A DNA MER1_type 63 196 0 240 228 25 13 chr4 100853820 100853899 -101474448 + GA-rich Low_complexity Low_complexity 2 81 0 24 0 0 0 chr4 100857219 100857243 -101471104 + AT_rich Low_complexity Low_complexity 1 24 0 412 353 133 54 chr4 100857867 100858753 -101469594 + L2 LINE L2 1955 2910 -404 1965 101 11 21 chr4 100859305 100859592 -101468755 - AluSc SINE Alu 0 309 26 28 29 0 0 chr4 100859625 100859660 -101468687 + AT_rich Low_complexity Low_complexity 1 35 0 256 231 204 46 chr4 100859700 100859808 -101468539 + L2 LINE L2 2728 2852 -462 240 35 0 0 chr4 100860978 100861007 -101467340 + (CA)n Simple_repeat Simple_repeat 2 30 0 1888 107 0 80 chr4 100861152 100861451 -101466896 + AluSg SINE Alu 1 272 -38 261 0 0 0 chr4 100861451 100861480 -101466867 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1888 107 0 80 chr4 100861480 100861516 -101466831 + AluSg SINE Alu 272 309 -1 22 88 0 0 chr4 100862041 100862098 -101466249 + AT_rich Low_complexity Low_complexity 1 57 0 1688 185 0 20 chr4 100863409 100863712 -101464635 - AluJo SINE Alu -15 297 1 557 317 40 62 chr4 100864196 100864549 -101463798 + MLT1J LTR MaLR 26 370 -141 432 270 97 26 chr4 100865525 100865863 -101462484 - LTR33 LTR ERVL -121 400 17 995 204 23 36 chr4 100866116 100866336 -101462011 - MER20 DNA MER1_type -2 217 1 217 171 24 0 chr4 100866516 100866557 -101461790 + T-rich Low_complexity Low_complexity 5 46 0 210 287 26 52 chr4 100867783 100867898 -101460449 - L2 LINE L2 -75 3238 3127 21 0 0 0 chr4 100867962 100867983 -101460364 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 100868275 100868302 -101460045 + AT_rich Low_complexity Low_complexity 1 27 0 8033 51 17 0 chr4 100868631 100870438 -101457909 + L1PA6 LINE L1 4330 6154 0 300 293 205 10 chr4 100871619 100871824 -101456523 + MIR SINE MIR 18 262 0 419 339 33 29 chr4 100872967 100873209 -101455138 + MIR SINE MIR 18 260 -2 359 328 27 27 chr4 100873942 100874128 -101454219 + L1ME4a LINE L1 5719 5904 -217 26 30 0 0 chr4 100874261 100874294 -101454053 + AT_rich Low_complexity Low_complexity 1 33 0 225 0 0 0 chr4 100880185 100880210 -101448137 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 24 67 0 0 chr4 100884842 100884887 -101443460 + AT_rich Low_complexity Low_complexity 1 45 0 1483 170 165 17 chr4 100884894 100885300 -101443047 - L1MB4 LINE L1 -16 6164 5698 408 200 29 29 chr4 100885468 100885573 -101442774 - L1MC3 LINE L1 -22 7763 7659 759 214 32 7 chr4 100885578 100885732 -101442615 + MER77 LTR ERV1 6 163 -442 616 216 0 0 chr4 100885779 100885895 -101442452 + MER77 LTR ERV1 404 519 -86 209 281 0 35 chr4 100885951 100886008 -101442339 - MIR SINE MIR -86 122 68 2507 102 16 11 chr4 100886015 100886386 -101441961 - THE1C LTR MaLR -2 373 1 589 317 84 36 chr4 100886392 100886641 -101441706 - MIR SINE MIR 0 262 2 1364 298 47 11 chr4 100886827 100887360 -101440987 + MLT1H1 LTR MaLR 4 555 0 371 340 103 6 chr4 100888208 100888364 -101439983 + MIR SINE MIR 21 191 -71 208 333 87 27 chr4 100890214 100890364 -101437983 + MIR SINE MIR 104 262 0 407 172 46 0 chr4 100893495 100893582 -101434765 + L1MC3 LINE L1 7007 7097 -688 243 286 44 11 chr4 100893583 100893674 -101434673 + MLT1F1 LTR MaLR 36 129 -438 2648 186 58 6 chr4 100893675 100893950 -101434397 + L1MC3 LINE L1 7199 7458 -327 3675 120 39 20 chr4 100893950 100894591 -101433756 - MER39B LTR ERV1 0 653 1 2648 186 58 6 chr4 100894591 100894865 -101433482 + L1MC3 LINE L1 7458 7777 -8 24 0 0 0 chr4 100895599 100895623 -101432724 + AT_rich Low_complexity Low_complexity 1 24 0 376 136 0 25 chr4 100896734 100896815 -101431532 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 2228 113 0 3 chr4 100896993 100897295 -101431052 - AluSq SINE Alu -12 301 1 4638 98 8 16 chr4 100897329 100897999 -101430348 - MER4A LTR ERV1 0 664 1 396 0 0 0 chr4 100898124 100898168 -101430179 + (TG)n Simple_repeat Simple_repeat 2 45 0 1102 206 171 45 chr4 100898291 100898912 -101429435 - LTR48 LTR ERV1 0 787 1 578 254 164 0 chr4 100899139 100899304 -101429043 - MLT1J LTR MaLR -63 448 257 272 301 34 96 chr4 100899343 100899489 -101428858 - MLT1J LTR MaLR -370 141 5 4440 210 81 25 chr4 100899844 100901128 -101427219 - Charlie1a DNA MER1_type -48 1407 17 336 256 83 2 chr4 100901223 100901350 -101426997 - L1ME LINE L1 -613 5508 5373 247 289 94 16 chr4 100901500 100901628 -101426719 + L1P LINE L1 4908 5045 -1101 25 0 0 0 chr4 100901631 100901656 -101426691 + AT_rich Low_complexity Low_complexity 1 25 0 246 200 33 33 chr4 100901963 100902023 -101426324 - MIR3 SINE MIR -40 168 109 2410 69 0 3 chr4 100902229 100902534 -101425813 - AluY SINE Alu -7 304 1 386 157 19 57 chr4 100902542 100902701 -101425646 + (TA)n Simple_repeat Simple_repeat 2 154 0 265 333 77 8 chr4 100902856 100902973 -101425374 + MIR SINE MIR 12 136 -126 6589 248 93 37 chr4 100904315 100908456 -101419891 - L1MB8 LINE L1 -15 6661 2020 2249 114 114 5 chr4 100908456 100908841 -101419506 + MSTA LTR MaLR 1 427 -1 6589 248 93 37 chr4 100908841 100909716 -101418631 - L1MB8 LINE L1 -4656 2020 1195 553 154 0 0 chr4 100909725 100909816 -101418531 - U6 snRNA snRNA 0 107 17 706 250 78 57 chr4 100909819 100910203 -101418144 - L1MB8 LINE L1 -5261 1281 890 886 239 30 13 chr4 100910217 100910447 -101417900 + MER46A DNA MER2_type 2 235 -1 1111 80 0 0 chr4 100910468 100910492 -101417855 + L1PA6 LINE L1 5672 5695 -459 303 85 0 0 chr4 100910492 100910539 -101417808 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1111 80 0 0 chr4 100910539 100910675 -101417672 + L1PA6 LINE L1 5694 5832 -322 831 55 9 0 chr4 100910675 100910784 -101417563 + L1PA6 LINE L1 6039 6148 -6 47 19 0 0 chr4 100910784 100910838 -101417509 + AT_rich Low_complexity Low_complexity 1 54 0 615 98 51 0 chr4 100910838 100911052 -101417295 + (TTAAA)n Simple_repeat Simple_repeat 1 225 0 725 264 99 71 chr4 100911114 100911610 -101416737 + L1M4 LINE L1 371 880 -5662 302 255 49 39 chr4 100911712 100911814 -101416533 + L1MC4 LINE L1 6619 6721 -1321 1961 183 8 8 chr4 100912955 100913321 -101415026 - MER47A DNA MER2_type 0 366 1 325 232 14 0 chr4 100913383 100913452 -101414895 + L2 LINE L2 3242 3311 -2 261 111 0 0 chr4 100913809 100913845 -101414502 + (T)n Simple_repeat Simple_repeat 1 36 0 1078 285 74 11 chr4 100914254 100914633 -101413714 - MLT1F LTR MaLR -82 460 58 829 276 22 4 chr4 100914675 100914900 -101413447 - MLT1H LTR MaLR -320 229 1 705 244 23 0 chr4 100915862 100916034 -101412313 - MER58A DNA MER1_type -3 221 46 362 296 53 30 chr4 100916059 100916191 -101412156 - MIR3 SINE MIR -48 160 26 2064 264 36 42 chr4 100917841 100918458 -101409889 + L1MD2 LINE L1 142 754 -5789 2769 216 112 41 chr4 100918531 100919646 -101408701 + L1MD2 LINE L1 649 1802 -4738 7788 221 53 77 chr4 100919668 100923464 -101404883 + L1MD2 LINE L1 2344 6014 -739 1576 206 71 3 chr4 100923464 100923828 -101404519 + MLT1B LTR MaLR 2 390 0 7788 221 53 77 chr4 100923828 100924550 -101403797 + L1MD2 LINE L1 6014 6752 -1 2136 268 33 50 chr4 100925124 100925910 -101402437 - L1MC4 LINE L1 -897 7145 6373 2655 235 102 28 chr4 100925920 100927193 -101401154 - L1ME2 LINE L1 0 6164 4794 1004 343 64 21 chr4 100927193 100927704 -101400643 + L2 LINE L2 1708 2256 -1058 1150 55 0 0 chr4 100927704 100927849 -101400498 - L1PA5 LINE L1 -6 6148 6004 1004 343 64 21 chr4 100927849 100928011 -101400336 + L2 LINE L2 2256 2410 -904 906 291 11 11 chr4 100928145 100928406 -101399941 + MIR SINE MIR 2 262 0 410 379 59 50 chr4 100928391 100929186 -101399161 + L2 LINE L2 2464 3272 0 * 24 67 0 0 chr4 100929311 100929356 -101398991 + AT_rich Low_complexity Low_complexity 1 45 0 222 267 137 20 chr4 100929398 100929544 -101398803 - MIR SINE MIR 0 262 100 312 297 72 57 chr4 100930855 100931064 -101397283 - MIR SINE MIR -37 225 14 21 36 0 0 chr4 100931253 100931281 -101397066 + AT_rich Low_complexity Low_complexity 1 28 0 325 232 14 0 chr4 100931843 100931912 -101396435 - L2 LINE L2 -2 3311 3242 2069 175 6 3 chr4 100931974 100932339 -101396008 + MER47A DNA MER2_type 1 366 0 302 255 49 39 chr4 100933480 100933582 -101394765 - L1MC4 LINE L1 -1321 6721 6619 725 264 99 71 chr4 100933684 100934180 -101394167 - L1M4 LINE L1 -5662 880 371 371 91 55 9 chr4 100934242 100934352 -101393995 + (TTTAA)n Simple_repeat Simple_repeat 5 119 0 21 0 0 0 chr4 100934352 100934373 -101393974 + AT_rich Low_complexity Low_complexity 1 21 0 831 55 9 0 chr4 100934373 100934482 -101393865 - L1PA6 LINE L1 -6 6148 6039 946 110 0 0 chr4 100934486 100934618 -101393729 - L1MC2 LINE L1 -341 5813 5694 303 85 0 0 chr4 100934618 100934665 -101393682 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 946 110 0 0 chr4 100934665 100934689 -101393658 - L1MC2 LINE L1 -459 5695 5672 886 239 30 13 chr4 100934710 100934940 -101393407 - MER46A DNA MER2_type -1 235 2 655 254 79 55 chr4 100934954 100935297 -101393050 + L1M4 LINE L1 890 1240 -5302 318 50 0 0 chr4 100935463 100935503 -101392844 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 1533 184 22 11 chr4 100935532 100935810 -101392537 - AluJo SINE Alu -31 281 1 529 248 122 22 chr4 100935898 100936120 -101392227 - HAL1b LINE L1 -701 647 404 394 257 10 10 chr4 100936236 100936337 -101392010 - MIR SINE MIR -93 169 69 649 293 95 16 chr4 100936459 100937319 -101391028 - L1MEc LINE L1 -4586 1798 990 238 250 130 9 chr4 100937799 100937907 -101390440 + HAL1 LINE L1 1112 1232 -1275 464 268 62 46 chr4 100938297 100938491 -101389856 + L2 LINE L2 3103 3299 -14 266 247 13 0 chr4 100938499 100938576 -101389771 + L1MC/D LINE L1 5707 5784 -2024 481 317 96 67 chr4 100938744 100939305 -101389042 - L2 LINE L2 -10 3303 2721 1832 136 98 14 chr4 100939305 100939651 -101388696 + THE1C LTR MaLR 1 375 0 481 317 96 67 chr4 100939651 100939814 -101388533 - L2 LINE L2 -592 2721 2564 238 217 17 17 chr4 100939848 100939908 -101388439 + CT-rich Low_complexity Low_complexity 2 61 0 236 240 0 0 chr4 100941213 100941263 -101387084 - MER94 DNA DNA -84 50 1 21 0 0 0 chr4 100941765 100941786 -101386561 + AT_rich Low_complexity Low_complexity 1 21 0 253 324 70 76 chr4 100942213 100942398 -101385949 + MLT1K LTR MaLR 14 197 -391 1736 171 113 99 chr4 100942421 100942976 -101385371 - LTR36 LTR ERV1 0 611 46 1758 165 0 44 chr4 100942976 100943297 -101385050 + AluJb SINE Alu 1 307 -5 1736 171 113 99 chr4 100943297 100943344 -101385003 - LTR36 LTR ERV1 -565 46 1 182 292 42 0 chr4 100943645 100943693 -101384654 - L2 LINE L2 -64 3208 3159 227 204 0 0 chr4 100944176 100944225 -101384122 + A-rich Low_complexity Low_complexity 1 49 0 505 264 182 14 chr4 100945434 100945582 -101382765 + MER5A DNA MER1_type 11 183 -6 3301 128 70 26 chr4 100945835 100946419 -101381928 - MER4B LTR ERV1 0 610 1 312 326 100 43 chr4 100947033 100947198 -101381149 + L1ME LINE L1 5497 5680 -441 2040 122 14 3 chr4 100947198 100947485 -101380862 - AluSx SINE Alu -10 302 13 312 326 100 43 chr4 100947485 100947549 -101380798 + L1ME LINE L1 5680 5739 -382 1067 220 9 7 chr4 100947665 100947977 -101380370 - MER65C LTR ERV1 -114 347 1 21 57 0 0 chr4 100948056 100948091 -101380256 + AT_rich Low_complexity Low_complexity 1 35 0 183 80 0 0 chr4 100948631 100948656 -101379691 + (TCCA)n Simple_repeat Simple_repeat 1 25 0 243 0 0 0 chr4 100949641 100949668 -101378679 + (TG)n Simple_repeat Simple_repeat 2 28 0 1795 160 0 0 chr4 100949680 100949943 -101378404 - AluSx SINE Alu -49 263 1 201 336 88 9 chr4 100951054 100951167 -101377180 + MIR SINE MIR 12 133 -129 206 341 152 15 chr4 100951329 100951461 -101376886 + L2 LINE L2 3095 3244 -28 180 234 109 31 chr4 100951797 100951861 -101376486 + MIR SINE MIR 81 149 -113 1661 178 58 12 chr4 100955711 100956037 -101372310 - MER61A LTR ERV1 0 343 3 209 316 84 14 chr4 100956155 100956348 -101371999 + L2 LINE L2 2854 3059 -213 220 189 11 56 chr4 100956781 100956871 -101371476 + (TA)n Simple_repeat Simple_repeat 2 87 0 2936 9 0 0 chr4 100959114 100959432 -101368915 - AluYb8 SINE Alu 0 318 1 25 31 0 0 chr4 100959753 100959785 -101368562 + AT_rich Low_complexity Low_complexity 1 32 0 41417 51 26 1 chr4 100959786 100965786 -101362561 + L1PA2 LINE L1 1 6155 0 35 0 0 0 chr4 100965790 100965825 -101362522 + AT_rich Low_complexity Low_complexity 1 35 0 24 103 0 0 chr4 100966293 100966380 -101361967 + AT_rich Low_complexity Low_complexity 1 87 0 28 0 0 0 chr4 100966802 100966830 -101361517 + AT_rich Low_complexity Low_complexity 1 28 0 291 333 106 24 chr4 100966993 100967200 -101361147 + MIR SINE MIR 6 229 -33 402 138 0 0 chr4 100967615 100967673 -101360674 + FRAM SINE Alu 69 126 -40 1799 204 39 30 chr4 100967798 100968229 -101360118 - MER31B LTR ERV1 -31 435 1 2706 245 42 80 chr4 100968657 100969898 -101358449 + L1MCb LINE L1 -137 1056 -4851 571 134 21 10 chr4 100969930 100970027 -101358320 + MER4A LTR ERV1 1 98 -566 2026 131 3 19 chr4 100970027 100970378 -101357969 + MER4A LTR ERV1 261 664 0 2840 97 181 30 chr4 100970381 100970907 -101357440 + MER4A-int LTR ERV1 1 605 -5993 4468 57 35 20 chr4 100970928 100971949 -101356398 + MER11A LTR ERVK 1 1266 0 1531 102 14 5 chr4 100971949 100972164 -101356183 - L1PA8 LINE L1 -24 6148 5932 384 126 66 18 chr4 100972166 100972304 -101356043 + MER4A-int LTR ERV1 601 813 -5785 226 163 0 47 chr4 100972407 100972450 -101355897 + LTR49 LTR ERV1 271 311 -284 7772 137 143 98 chr4 100972473 100975045 -101353302 + MER4A-int LTR ERV1 994 3681 -2917 * 14909 118 62 21 chr4 100975044 100975719 -101352628 + MER4A-int LTR ERV1 3837 4483 -2115 2384 44 41 0 chr4 100975719 100976014 -101352333 + AluY SINE Alu 1 307 -4 14909 118 62 21 chr4 100976014 100977985 -101350362 + MER4A-int LTR ERV1 4483 6591 -7 593 124 21 10 chr4 100978007 100978104 -101350243 + MER4A LTR ERV1 1 98 -566 1760 154 6 19 chr4 100978104 100978454 -101349893 + MER4A LTR ERV1 261 664 0 226 241 35 121 chr4 100978454 100978570 -101349777 + L1MCb LINE L1 1081 1186 -5240 907 245 90 32 chr4 100978674 100978930 -101349417 + L1MCb LINE L1 2128 2368 -4058 1551 193 67 52 chr4 100978930 100979318 -101349029 - MSTD LTR MaLR 0 396 3 907 245 90 32 chr4 100979318 100979723 -101348624 + L1MCb LINE L1 2368 2886 -3540 1929 236 81 6 chr4 100979725 100980430 -101347917 + L1MCb LINE L1 3148 3905 -2521 1077 212 22 9 chr4 100980431 100980653 -101347694 + THE1C LTR MaLR 1 225 -150 554 229 25 0 chr4 100980654 100980776 -101347571 + L1MCb LINE L1 4003 4127 -2299 332 287 73 53 chr4 100980923 100981015 -101347332 + L2 LINE L2 3161 3259 -54 2209 127 6 12 chr4 100981015 100981354 -101346993 - MER1B DNA MER1_type 0 337 1 332 287 73 53 chr4 100981354 100981411 -101346936 + L2 LINE L2 3259 3313 0 233 29 29 0 chr4 100983279 100983313 -101345034 + (TG)n Simple_repeat Simple_repeat 2 36 0 663 144 2 2 chr4 100983712 100984725 -101343622 - CER Satellite Satellite 0 1012 1 623 157 1 2 chr4 100984827 100986069 -101342278 - CER Satellite Satellite 0 1241 1 329 266 32 76 chr4 100986171 100986329 -101342018 + L1MC3 LINE L1 4292 4442 -1704 3248 224 66 23 chr4 100986346 100987933 -101340414 + L1MC3 LINE L1 4581 5371 -775 294 167 0 83 chr4 100988063 100988171 -101340176 + L1M4 LINE L1 4299 4397 -1749 335 322 148 20 chr4 100988482 100988631 -101339716 - MER5B DNA MER1_type -9 169 2 815 215 17 17 chr4 100988648 100988825 -101339522 + MER5B DNA MER1_type 1 177 -1 905 136 7 0 chr4 100989087 100989227 -101339120 - L1PB4 LINE L1 -5 6151 6011 699 199 114 5 chr4 100989349 100989640 -101338707 - MSTD LTR MaLR -5 391 1 795 201 0 52 chr4 100989844 100990018 -101338329 - FAM SINE Alu -10 165 1 14909 30 1 0 chr4 100991325 100993194 -101335153 + L1P LINE L1 3432 5302 -844 1040 298 31 26 chr4 100993296 100993712 -101334635 - LTR16A LTR ERVL -17 433 16 45 19 0 0 chr4 100993742 100993794 -101334553 + AT_rich Low_complexity Low_complexity 1 52 0 2068 38 0 0 chr4 100993964 100994204 -101334143 + AluY SINE Alu 1 240 -71 1781 139 37 17 chr4 100995523 100995818 -101332529 + AluSx SINE Alu 1 301 -11 319 327 55 30 chr4 100996042 100996207 -101332140 + MER5B DNA MER1_type 9 177 -1 3799 90 2 6 chr4 100996458 100996971 -101331376 + MER9 LTR ERVK 1 511 0 553 299 34 29 chr4 100996993 100997197 -101331150 - MIR SINE MIR -26 236 32 188 98 0 49 chr4 100997690 100997731 -101330616 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 433 206 21 0 chr4 100998074 100998165 -101330182 - LTR16A LTR ERVL -5 445 353 251 193 18 0 chr4 100998165 100998222 -101330125 + MER52A LTR ERV1 1 58 -1697 6468 192 59 49 chr4 100998752 101000334 -101328013 + MER52A LTR ERV1 56 1755 0 347 225 45 11 chr4 101000353 101000442 -101327905 - LTR16A LTR ERVL -159 291 200 286 306 37 56 chr4 101000670 101000778 -101327569 + MER5A DNA MER1_type 84 189 0 2393 70 0 10 chr4 101001580 101001894 -101326453 - AluY SINE Alu 0 311 1 2194 116 3 13 chr4 101002647 101002958 -101325389 - AluSc SINE Alu -1 308 1 295 313 23 9 chr4 101003879 101004093 -101324254 + L1M4 LINE L1 2270 2486 -3660 230 288 83 22 chr4 101004628 101004857 -101323490 + L1M4 LINE L1 3708 3950 -2196 13407 135 11 27 chr4 101004960 101007307 -101321040 - Tigger1 DNA MER2_type -108 2310 1 2406 174 77 14 chr4 101007910 101008393 -101319954 - LTR64 LTR ERVK 0 513 1 2305 208 37 46 chr4 101008662 101009336 -101319011 + L1MA9 LINE L1 5606 6273 -39 212 283 0 0 chr4 101010112 101010158 -101318189 - MIR SINE MIR -9 253 208 216 296 85 74 chr4 101011646 101011835 -101316512 - L2 LINE L2 -14 3299 3109 211 269 171 56 chr4 101011908 101012089 -101316258 - L2 LINE L2 -356 2958 2743 1952 153 33 17 chr4 101012089 101012448 -101315899 + MLT1A1 LTR MaLR 1 365 0 211 269 171 56 chr4 101012448 101012500 -101315847 - L2 LINE L2 -571 2743 2698 2436 64 0 3 chr4 101012506 101012803 -101315544 + AluY SINE Alu 1 296 -15 3665 180 55 24 chr4 101012819 101013684 -101314663 + L1MB3 LINE L1 5289 6180 -3 2203 206 98 90 chr4 101014595 101015415 -101312932 - LTR1B LTR ERV1 0 826 1 21 36 0 0 chr4 101015429 101015457 -101312890 + AT_rich Low_complexity Low_complexity 1 28 0 619 174 44 17 chr4 101015539 101015699 -101312648 - LTR49 LTR ERV1 0 595 468 575 279 119 17 chr4 101015699 101015993 -101312354 - LTR48B LTR ERV1 -206 438 115 309 256 0 0 chr4 101016070 101016161 -101312186 - MER34 LTR ERV1 -446 96 6 206 323 0 0 chr4 101016409 101016505 -101311842 + T-rich Low_complexity Low_complexity 1 96 0 2231 190 61 7 chr4 101016593 101017114 -101311233 + MER21B LTR ERV1 1 608 -255 410 212 106 38 chr4 101017118 101017250 -101311097 + Tigger3(Golem) DNA MER2_type 1 141 -2888 * 758 94 31 24 chr4 101017248 101017375 -101310972 + Tigger3(Golem) DNA MER2_type 2771 2898 -131 2442 150 133 0 chr4 101017375 101017827 -101310520 - MER41E LTR ERV1 0 512 1 606 231 31 0 chr4 101017910 101018040 -101310307 + Tigger3(Golem) DNA MER2_type 2896 3029 0 * 1032 158 43 34 chr4 101018040 101018267 -101310080 + MER21B LTR ERV1 609 837 -26 220 352 46 46 chr4 101018495 101018714 -101309633 - L2 LINE L2 -703 2611 2393 378 75 0 0 chr4 101018952 101019005 -101309342 + MADE1 DNA Mariner 28 80 0 288 162 54 162 chr4 101019790 101019938 -101308409 - MLT1H LTR MaLR -23 526 408 333 203 0 13 chr4 101020095 101020174 -101308173 - MLT1I LTR MaLR -267 142 65 205 169 34 56 chr4 101022795 101022884 -101305463 + (TATAA)n Simple_repeat Simple_repeat 3 89 0 320 320 82 21 chr4 101022915 101023109 -101305238 - L1M4 LINE L1 -1740 4406 4201 396 293 102 22 chr4 101023602 101023827 -101304520 - MIR SINE MIR -16 246 4 687 237 56 5 chr4 101025289 101025487 -101302860 + MER3 DNA MER1_type 1 208 -1 207 69 0 0 chr4 101025621 101025650 -101302697 + (CA)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr4 101027020 101027041 -101301306 + AT_rich Low_complexity Low_complexity 1 21 0 298 270 117 18 chr4 101027940 101028051 -101300296 - L2 LINE L2 -1 3312 3191 340 266 53 0 chr4 101028123 101028217 -101300130 - LTR16B LTR ERVL -2 462 364 305 344 42 16 chr4 101028219 101028411 -101299936 - ERVL LTR ERVL -2296 3468 3272 * 809 347 94 18 chr4 101028409 101029222 -101299125 - ERVL LTR ERVL -2195 2801 1927 2178 320 45 32 chr4 101029243 101030541 -101297806 - ERVL LTR ERVL -3422 1574 261 2380 133 19 3 chr4 101030551 101030920 -101297427 + THE1C LTR MaLR 1 375 0 7587 108 46 86 chr4 101030920 101032355 -101295992 + THE1C-int LTR MaLR 1 1378 -202 622 167 45 91 chr4 101032457 101032655 -101295692 - MER4A LTR ERV1 -475 189 1 2494 193 123 52 chr4 101032769 101033540 -101294807 - LTR1B LTR ERV1 0 826 1 482 62 0 0 chr4 101034216 101034281 -101294066 + MADE1 DNA Mariner 16 80 0 195 114 0 0 chr4 101034936 101034971 -101293376 + (GA)n Simple_repeat Simple_repeat 1 35 0 358 339 0 8 chr4 101037401 101037531 -101290816 + LTR16C LTR ERVL 363 491 0 837 214 42 23 chr4 101038398 101038613 -101289734 - L1MB5 LINE L1 -2 6172 5954 229 273 40 20 chr4 101038709 101038808 -101289539 - MER46C DNA MER2_type -1 337 237 3147 173 39 3 chr4 101038853 101039471 -101288876 - L1MB1 LINE L1 -1 6167 5528 1445 164 9 24 chr4 101039474 101039650 -101288697 - L1MB1 LINE L1 -717 5451 5274 2588 113 3 0 chr4 101039650 101040013 -101288334 - THE1B LTR MaLR 0 364 1 1445 164 9 24 chr4 101040013 101040228 -101288119 - L1MB1 LINE L1 -894 5274 5066 * 1789 210 46 2 chr4 101040227 101040723 -101287624 + L1 LINE L1 2990 3507 -2639 22 0 0 0 chr4 101041039 101041061 -101287286 + AT_rich Low_complexity Low_complexity 1 22 0 2235 234 87 65 chr4 101041740 101042603 -101285744 + MER97a DNA MER1_type? 13 894 0 1089 222 67 77 chr4 101042890 101043069 -101285278 + LTR52 LTR ERVL 2 181 -240 2526 58 0 3 chr4 101043069 101043381 -101284966 + AluY SINE Alu 1 311 0 1089 222 67 77 chr4 101043381 101043606 -101284741 + LTR52 LTR ERVL 181 402 -19 30 45 0 0 chr4 101043787 101043831 -101284516 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr4 101044245 101044267 -101284080 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr4 101044556 101044585 -101283762 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 101045236 101045259 -101283088 + AT_rich Low_complexity Low_complexity 1 23 0 240 282 42 46 chr4 101045549 101045808 -101282539 + L1M4 LINE L1 2131 2388 -3758 263 185 43 0 chr4 101045904 101045996 -101282351 + (TA)n Simple_repeat Simple_repeat 1 96 0 542 204 72 60 chr4 101045996 101046163 -101282184 - MLT1A2 LTR MaLR -179 195 27 368 261 139 57 chr4 101046383 101046663 -101281684 + L1M4 LINE L1 2782 3084 -3062 334 350 25 0 chr4 101046729 101046886 -101281461 + MER20 DNA MER1_type 38 198 -21 625 295 43 64 chr4 101046962 101047310 -101281037 + L1MA4A LINE L1 5515 5802 -360 1359 197 45 71 chr4 101047559 101047940 -101280407 - MLT1A2 LTR MaLR 0 374 4 1826 144 58 19 chr4 101048396 101048757 -101279590 - THE1C LTR MaLR 0 375 1 2248 118 39 34 chr4 101048757 101049139 -101279208 - THE1C-int LTR MaLR 0 1580 1197 1089 72 0 209 chr4 101049137 101049400 -101278947 - THE1C-int LTR MaLR -1372 208 1 * 1074 160 80 30 chr4 101049400 101049637 -101278710 - THE1C LTR MaLR 0 375 127 4739 111 7 1 chr4 101049637 101050351 -101277996 + L1PB1 LINE L1 5434 6151 0 39 22 0 0 chr4 101050351 101050397 -101277950 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr4 101051750 101051779 -101276568 + AT_rich Low_complexity Low_complexity 1 29 0 201 277 0 0 chr4 101052258 101052305 -101276042 + L2 LINE L2 1758 1804 -1510 225 291 105 0 chr4 101052376 101052462 -101275885 + L2 LINE L2 936 1030 -2284 347 346 16 5 chr4 101052498 101052683 -101275664 + L2 LINE L2 1957 2143 -1171 333 334 87 61 chr4 101052730 101053188 -101275159 + L2 LINE L2 2840 3309 -4 37 23 0 0 chr4 101053986 101054030 -101274317 + AT_rich Low_complexity Low_complexity 1 44 0 585 281 94 67 chr4 101054671 101056132 -101272215 - L1MEc LINE L1 -2171 4044 2545 306 331 24 24 chr4 101056192 101056316 -101272031 + L2 LINE L2 3189 3312 -1 374 262 229 45 chr4 101056376 101056777 -101271570 - L1MEc LINE L1 -3913 2483 2009 315 427 23 0 chr4 101056932 101057152 -101271195 - L1MEc LINE L1 -4573 1823 1599 369 39 20 0 chr4 101057159 101057210 -101271137 + MADE1 DNA Mariner 1 52 -28 491 127 13 0 chr4 101057220 101057299 -101271048 + MADE1 DNA Mariner 1 80 0 234 261 29 14 chr4 101057307 101057376 -101270971 - HAL1 LINE L1 -937 1570 1501 2018 109 3 51 chr4 101057561 101057874 -101270473 - AluSx SINE Alu -14 298 1 212 393 48 40 chr4 101059100 101059352 -101268995 - L2 LINE L2 -208 3064 2811 22 35 0 0 chr4 101059376 101059405 -101268942 + AT_rich Low_complexity Low_complexity 1 29 0 2119 108 7 0 chr4 101059409 101059696 -101268651 - AluSq SINE Alu -21 292 4 1242 40 0 0 chr4 101060036 101060219 -101268128 + AluY SINE Alu 132 314 0 1664 183 3 10 chr4 101060730 101061204 -101267143 + AluJb SINE Alu 1 472 0 237 65 0 0 chr4 101061204 101061235 -101267112 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 733 323 95 15 chr4 101061256 101061656 -101266691 + MLT1J2 LTR MaLR 3 434 -16 1505 230 99 33 chr4 101061798 101062285 -101266062 - LTR40a LTR ERVL 0 519 1 296 315 40 27 chr4 101062319 101062468 -101265879 - MIR3 SINE MIR -1 207 57 185 384 29 43 chr4 101062670 101062808 -101265539 + L2 LINE L2 3051 3186 -86 2110 135 0 3 chr4 101062865 101063169 -101265178 + AluSx SINE Alu 1 303 -9 25 51 0 0 chr4 101063881 101063920 -101264427 + AT_rich Low_complexity Low_complexity 1 39 0 2403 163 24 5 chr4 101064112 101064530 -101263817 - MSTB LTR MaLR 0 426 1 1575 236 30 47 chr4 101064613 101065104 -101263243 + MLT1D LTR MaLR 21 503 -2 399 297 44 57 chr4 101065243 101065609 -101262738 + MLT1H LTR MaLR 76 543 -6 274 371 8 8 chr4 101066451 101066575 -101261772 + L2 LINE L2 3182 3305 -8 192 77 0 0 chr4 101067870 101067896 -101260451 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 443 325 26 31 chr4 101067914 101068142 -101260205 - L2 LINE L2 -19 3294 3068 1844 270 89 56 chr4 101068309 101069365 -101258982 + L1ME1 LINE L1 945 2035 -4361 321 175 0 0 chr4 101069866 101069929 -101258418 + HSMAR1 DNA Mariner 1 63 -1224 5777 95 15 4 chr4 101069938 101070725 -101257622 + HSMAR1 DNA Mariner 492 1287 0 2951 318 56 30 chr4 101070726 101072174 -101256173 + ERVL LTR ERVL 1001 2486 -3278 3795 303 24 53 chr4 101072219 101073410 -101254937 + ERVL LTR ERVL 3879 5016 -748 1718 163 3 23 chr4 101073410 101073710 -101254637 + AluJo SINE Alu 1 294 -18 3795 303 24 53 chr4 101073710 101074087 -101254260 + ERVL LTR ERVL 5016 5402 -362 312 291 86 51 chr4 101074433 101074608 -101253739 + LTR41 LTR ERVL 6 186 -587 337 161 36 71 chr4 101075151 101075263 -101253084 + LTR41 LTR ERVL 660 767 -6 1794 247 35 40 chr4 101075271 101075926 -101252421 + L1ME1 LINE L1 3930 4581 -1634 23 0 0 0 chr4 101075995 101076018 -101252329 + AT_rich Low_complexity Low_complexity 1 23 0 1134 214 41 41 chr4 101076019 101076360 -101251987 + L1ME1 LINE L1 5033 5373 -842 413 225 69 44 chr4 101076393 101076553 -101251794 + L1ME1 LINE L1 5349 5509 -726 435 92 0 31 chr4 101076553 101076618 -101251729 + THE1C LTR MaLR 1 63 -312 982 232 97 28 chr4 101076637 101076978 -101251369 + L1ME1 LINE L1 5723 6086 -161 2339 136 83 5 chr4 101077288 101077685 -101250662 - MSTA LTR MaLR 0 428 1 1440 204 19 7 chr4 101078139 101078408 -101249939 + AluJo SINE Alu 1 272 -40 222 37 0 0 chr4 101078408 101078435 -101249912 + (TC)n Simple_repeat Simple_repeat 2 28 0 409 107 0 27 chr4 101078461 101078536 -101249811 + (TA)n Simple_repeat Simple_repeat 2 74 0 251 232 0 0 chr4 101078825 101078881 -101249466 + (TA)n Simple_repeat Simple_repeat 2 57 0 402 147 0 0 chr4 101078881 101078949 -101249398 + MLT2A2 LTR ERVL 386 453 0 252 316 94 17 chr4 101079140 101079257 -101249090 + MIR SINE MIR 18 143 -65 21 57 0 0 chr4 101079671 101079706 -101248641 + AT_rich Low_complexity Low_complexity 1 35 0 2689 73 0 0 chr4 101081342 101081698 -101246649 - L1PA8 LINE L1 -13 6159 5804 7456 32 0 0 chr4 101081911 101083483 -101244864 + L1PA4 LINE L1 4558 6129 -26 275 48 0 24 chr4 101083485 101083527 -101244820 + (TAAAA)n Simple_repeat Simple_repeat 1 41 0 2027 165 64 57 chr4 101085308 101085732 -101242615 + MLT2B2 LTR ERVL 89 515 0 683 328 12 8 chr4 101085732 101085973 -101242374 + MIR SINE MIR 21 262 0 483 203 16 65 chr4 101086194 101086317 -101242030 - L2 LINE L2 0 3313 3197 501 319 117 17 chr4 101086419 101086717 -101241630 - L2 LINE L2 -340 2974 2647 1503 224 103 5 chr4 101090470 101090895 -101237452 + MLT1C LTR MaLR 1 467 0 259 374 146 0 chr4 101091563 101091686 -101236661 - MIR SINE MIR -120 142 2 632 201 0 0 chr4 101092338 101092472 -101235875 - L1 LINE L1 -3691 2455 2322 2751 169 55 6 chr4 101092472 101093013 -101235334 + L1PA16 LINE L1 5590 6159 -7 404 287 44 0 chr4 101093131 101093267 -101235080 - MLT1I LTR MaLR -256 153 12 534 281 15 15 chr4 101093499 101093634 -101234713 - MLT1J2 LTR MaLR -244 206 72 242 301 84 21 chr4 101094974 101095117 -101233230 - MIR SINE MIR -83 179 28 247 359 48 0 chr4 101095684 101095787 -101232560 + MIR3 SINE MIR 92 199 -9 308 289 20 86 chr4 101096174 101096239 -101232108 + MIR3 SINE MIR 58 126 -82 1378 226 27 0 chr4 101096239 101096536 -101231811 + AluJo SINE Alu 1 305 -7 308 289 20 86 chr4 101096536 101096622 -101231725 + MIR3 SINE MIR 126 199 -9 1819 146 55 6 chr4 101097297 101097640 -101230707 - L1MA6 LINE L1 0 6300 5941 3889 146 15 16 chr4 101097640 101098589 -101229758 + L1MA6 LINE L1 4991 5941 -359 225 0 0 0 chr4 101099929 101099954 -101228393 + (CA)n Simple_repeat Simple_repeat 2 26 0 448 97 0 58 chr4 101100312 101100415 -101227932 + (TTTC)n Simple_repeat Simple_repeat 4 100 0 224 407 111 31 chr4 101101556 101101944 -101226403 + L2 LINE L2 2854 3272 0 300 295 82 41 chr4 101101972 101102094 -101226253 - L1ME LINE L1 -521 5600 5474 23 68 0 0 chr4 101102105 101102149 -101226198 + AT_rich Low_complexity Low_complexity 1 44 0 1585 185 78 0 chr4 101102337 101102656 -101225691 - L1MC2 LINE L1 -13 6331 5988 234 143 0 0 chr4 101102661 101102696 -101225651 + tRNA-Tyr-TAC tRNA tRNA 1 35 -41 2211 103 0 19 chr4 101102763 101103075 -101225272 - AluY SINE Alu -5 306 1 260 421 23 37 chr4 101103638 101103852 -101224495 + L2 LINE L2 3032 3242 -30 231 280 84 28 chr4 101104447 101104554 -101223793 - MIR SINE MIR -16 246 134 1545 227 99 108 chr4 101104559 101105505 -101222842 + LTR1B LTR ERV1 1 1020 0 745 257 59 13 chr4 101105882 101106119 -101222228 + MIR SINE MIR 15 262 0 372 159 0 0 chr4 101106829 101106892 -101221455 - L1PA16 LINE L1 -9 6157 6095 607 278 17 28 chr4 101107024 101107200 -101221147 + MIR SINE MIR 88 261 -1 583 263 74 0 chr4 101107301 101107544 -101220803 - MER20B DNA MER1_type -1 782 522 2060 118 0 14 chr4 101108930 101109218 -101219129 - AluSx SINE Alu -19 293 10 411 298 144 5 chr4 101111158 101111346 -101217001 + MIR SINE MIR 31 244 -18 195 129 0 0 chr4 101111349 101111380 -101216967 + (ATG)n Simple_repeat Simple_repeat 3 33 0 705 198 0 0 chr4 101111663 101111784 -101216563 - FLAM_A SINE Alu -11 122 2 879 186 0 42 chr4 101111805 101111972 -101216375 + FRAM SINE Alu 1 160 -16 1547 182 54 54 chr4 101112158 101112531 -101215816 + MLT1A2 LTR MaLR 1 373 -1 398 302 71 80 chr4 101114029 101114340 -101214007 + L3 LINE CR1 282 589 -988 2148 116 3 0 chr4 101114696 101114981 -101213366 - AluSc SINE Alu -22 287 2 273 286 102 0 chr4 101114996 101115094 -101213253 - MIR SINE MIR -5 257 150 2346 114 22 19 chr4 101115910 101116271 -101212076 - THE1B LTR MaLR 0 364 3 9911 121 25 27 chr4 101116273 101117856 -101210491 - THE1B-int LTR MaLR 0 1580 1 2273 104 71 6 chr4 101117860 101118197 -101210150 - THE1B LTR MaLR -5 359 1 23 33 0 0 chr4 101118939 101118969 -101209378 + AT_rich Low_complexity Low_complexity 1 30 0 197 161 0 0 chr4 101120078 101120109 -101208238 - L2 LINE L2 -95 3218 3188 370 369 106 28 chr4 101120359 101120830 -101207517 - L2 LINE L2 -475 2839 2332 1434 225 98 23 chr4 101120837 101121404 -101206943 + L1ME2 LINE L1 5448 6075 -89 337 266 0 13 chr4 101121408 101121487 -101206860 - MER2 DNA MER2_type -1 344 267 955 207 0 0 chr4 101121577 101121741 -101206606 - MER2 DNA MER2_type -180 165 2 406 343 123 36 chr4 101121827 101122512 -101205835 - L2 LINE L2 -1039 2275 1532 245 209 0 0 chr4 101122692 101122735 -101205612 - MER2 DNA MER2_type -1 344 302 897 194 12 0 chr4 101122860 101123020 -101205327 - MER2 DNA MER2_type -183 162 1 1039 254 79 55 chr4 101123477 101123969 -101204378 - MLT1D LTR MaLR 0 505 2 207 0 0 0 chr4 101124064 101124087 -101204260 + (CA)n Simple_repeat Simple_repeat 1 23 0 303 290 250 10 chr4 101124642 101124842 -101203505 - MIR SINE MIR -2 260 13 1464 181 129 6 chr4 101124949 101125274 -101203073 + MLT1A1 LTR MaLR 1 365 0 36 94 0 0 chr4 101125283 101125389 -101202958 + AT_rich Low_complexity Low_complexity 1 106 0 22 35 0 0 chr4 101125453 101125482 -101202865 + AT_rich Low_complexity Low_complexity 1 29 0 252 122 0 0 chr4 101125646 101125687 -101202660 + (TG)n Simple_repeat Simple_repeat 2 42 0 21 36 0 0 chr4 101126302 101126330 -101202017 + AT_rich Low_complexity Low_complexity 1 28 0 921 198 160 78 chr4 101126334 101126678 -101201669 - MLT1B LTR MaLR -16 374 3 1014 324 64 23 chr4 101127440 101127921 -101200426 - L2 LINE L2 0 3313 2813 1452 312 53 11 chr4 101130439 101131191 -101197156 + L1MD2 LINE L1 145 955 -5588 1477 244 68 21 chr4 101131193 101131726 -101196621 + L1MD2 LINE L1 1608 2165 -4375 574 239 77 35 chr4 101131806 101131940 -101196407 + L1MD2 LINE L1 2327 2454 -4086 6936 61 6 0 chr4 101131940 101133109 -101195238 + L1PA7 LINE L1 4976 6154 0 574 239 77 35 chr4 101133109 101133234 -101195113 + L1MD2 LINE L1 2454 2597 -3943 2983 221 22 96 chr4 101133257 101133740 -101194607 + L1MD2 LINE L1 4866 5383 -1370 298 233 0 0 chr4 101133740 101133813 -101194534 + LTR30 LTR ERV1 552 624 -98 2983 221 22 96 chr4 101133813 101135303 -101193044 + L1MD2 LINE L1 5383 6751 -2 39 60 0 0 chr4 101135562 101135629 -101192718 + AT_rich Low_complexity Low_complexity 1 67 0 618 265 41 41 chr4 101136166 101136385 -101191962 - MER20 DNA MER1_type 0 219 1 300 27 0 0 chr4 101137027 101137064 -101191283 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 78 0 0 chr4 101137186 101137237 -101191110 + AT_rich Low_complexity Low_complexity 1 51 0 2847 181 42 8 chr4 101137239 101137865 -101190482 + L1MA4 LINE L1 3914 4560 -1586 670 156 39 117 chr4 101137866 101138071 -101190276 - MER51C LTR ERV1 0 640 452 4229 173 35 18 chr4 101138322 101139761 -101188586 + L1MA4 LINE L1 4542 6020 -280 330 209 35 0 chr4 101139765 101139851 -101188496 + L1MB3 LINE L1 6087 6175 -8 364 288 27 0 chr4 101140072 101140183 -101188164 - MER103 DNA DNA -22 144 31 261 83 0 0 chr4 101140700 101140736 -101187611 + (TG)n Simple_repeat Simple_repeat 2 37 0 201 175 0 0 chr4 101140777 101140817 -101187530 + (TTA)n Simple_repeat Simple_repeat 2 41 0 278 309 29 57 chr4 101141927 101142102 -101186245 + MIR SINE MIR 30 199 -63 950 319 98 3 chr4 101142197 101142532 -101185815 + MLT1J LTR MaLR 28 394 -117 237 286 0 0 chr4 101142642 101142698 -101185649 - L2 LINE L2 -75 3238 3183 23 54 0 0 chr4 101143738 101143775 -101184572 + AT_rich Low_complexity Low_complexity 1 37 0 341 355 46 24 chr4 101143864 101144103 -101184244 + L2 LINE L2 2825 3066 -247 255 274 32 63 chr4 101144179 101144274 -101184073 + L2 LINE L2 3222 3313 0 219 247 0 43 chr4 101145468 101145561 -101182786 + A-rich Low_complexity Low_complexity 4 92 0 520 207 8 8 chr4 101146831 101146952 -101181395 - L1MC5 LINE L1 -36 7925 7805 242 93 0 23 chr4 101147082 101147125 -101181222 + (CA)n Simple_repeat Simple_repeat 2 43 0 306 365 127 0 chr4 101148616 101148797 -101179550 + MIR SINE MIR 59 262 0 21 36 0 0 chr4 101148889 101148917 -101179430 + AT_rich Low_complexity Low_complexity 1 28 0 1061 126 30 40 chr4 101149891 101150089 -101178258 - THE1C LTR MaLR 0 375 180 3418 140 78 19 chr4 101150098 101150675 -101177672 + THE1C-int LTR MaLR 970 1580 0 796 105 53 111 chr4 101150675 101150846 -101177501 + THE1C LTR MaLR 1 161 -214 2103 125 0 0 chr4 101150846 101151135 -101177212 - AluSg SINE Alu -21 289 1 360 87 0 0 chr4 101151135 101151181 -101177166 + MSTA LTR MaLR 383 428 0 27 62 0 0 chr4 101152567 101152615 -101175732 + AT_rich Low_complexity Low_complexity 1 48 0 375 294 96 40 chr4 101153435 101153690 -101174657 + L1ME3 LINE L1 5703 5969 -209 28 0 0 0 chr4 101153690 101153718 -101174629 + AT_rich Low_complexity Low_complexity 1 28 0 2131 78 0 0 chr4 101153718 101153987 -101174360 - AluY SINE Alu -27 284 16 443 286 38 8 chr4 101154108 101154241 -101174106 - MIR SINE MIR -101 161 25 192 40 0 0 chr4 101154430 101154455 -101173892 + (TA)n Simple_repeat Simple_repeat 1 25 0 564 289 43 36 chr4 101154895 101155148 -101173199 - MIR SINE MIR -2 260 6 576 135 22 0 chr4 101155235 101155324 -101173023 - MLT1B LTR MaLR 0 390 300 2637 247 39 18 chr4 101155518 101156291 -101172056 - L1ME2 LINE L1 -15 6149 5361 13913 151 22 9 chr4 101156300 101158664 -101169683 + Tigger1 DNA MER2_type 26 2418 0 595 272 48 16 chr4 101158664 101158977 -101169370 - L1ME2 LINE L1 -784 5362 5040 180 77 0 0 chr4 101158990 101159016 -101169331 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 1756 241 17 39 chr4 101159016 101159477 -101168870 - MLT2B1 LTR ERVL -69 451 1 422 219 38 0 chr4 101159477 101159582 -101168765 - L1ME2 LINE L1 -1217 4929 4821 352 246 123 18 chr4 101159760 101159874 -101168473 - MER58C DNA MER1_type 0 215 90 2060 122 3 0 chr4 101160905 101161199 -101167148 - AluSc SINE Alu -14 295 1 328 269 62 23 chr4 101161612 101161742 -101166605 - MIR SINE MIR -60 202 68 1769 133 34 88 chr4 101163640 101164025 -101164322 - THE1B LTR MaLR 0 364 1 547 285 136 14 chr4 101165507 101165728 -101162619 - MIR SINE MIR -12 250 3 466 342 52 21 chr4 101166967 101167367 -101160980 - L1MC/D LINE L1 -743 5403 5122 214 278 14 143 chr4 101168118 101168236 -101160111 - MIR SINE MIR -55 207 127 2228 93 3 0 chr4 101168236 101168527 -101159820 + AluSp SINE Alu 6 297 -16 214 278 14 143 chr4 101168527 101168624 -101159723 - MIR SINE MIR -135 127 19 1363 283 84 17 chr4 101168782 101169248 -101159099 + MLT1G1 LTR MaLR 73 569 -26 241 385 22 22 chr4 101169383 101169562 -101158785 - MIR SINE MIR -36 226 48 2520 155 21 0 chr4 101170779 101171198 -101157149 + MSTA LTR MaLR 1 428 0 352 0 0 0 chr4 101171504 101171546 -101156801 - L1PA3 LINE L1 -180 5975 5934 210 303 110 9 chr4 101171563 101171672 -101156675 - L2 LINE L2 -1458 1856 1737 778 147 28 12 chr4 101171757 101172157 -101156190 + (TA)n Simple_repeat Simple_repeat 1 406 0 658 272 94 30 chr4 101172165 101172558 -101155789 - L2 LINE L2 -1640 1674 1257 469 323 112 54 chr4 101172572 101172740 -101155607 - L2 LINE L2 -2940 374 217 2443 41 3 3 chr4 101172740 101173031 -101155316 + AluY SINE Alu 1 291 -20 469 323 112 54 chr4 101173031 101173193 -101155154 - L2 LINE L2 -3097 217 25 628 336 44 29 chr4 101173253 101173568 -101154779 + LTR16C LTR ERVL 4 323 -168 21 36 0 0 chr4 101173631 101173659 -101154688 + AT_rich Low_complexity Low_complexity 1 28 0 471 277 158 18 chr4 101173757 101174085 -101154262 + HAL1 LINE L1 2023 2396 -111 3636 99 154 3 chr4 101174241 101174839 -101153508 - LTR12 LTR ERV1 0 688 1 408 193 147 68 chr4 101174918 101175183 -101153164 - pTR5 LTR ERV1 -1410 1028 743 286 303 0 22 chr4 101175211 101175300 -101153047 + GA-rich Low_complexity Low_complexity 3 89 0 552 149 0 0 chr4 101175674 101175768 -101152579 + (TCCC)n Simple_repeat Simple_repeat 3 96 0 285 69 35 35 chr4 101176086 101176144 -101152203 + (TTTCC)n Simple_repeat Simple_repeat 3 60 0 779 169 0 0 chr4 101176439 101176569 -101151778 - L1MB4 LINE L1 -37 6143 6014 198 295 33 0 chr4 101176849 101176910 -101151437 - L2 LINE L2 -1381 1933 1871 2152 136 3 0 chr4 101177094 101177402 -101150945 + AluSx SINE Alu 1 309 -3 2573 38 0 3 chr4 101177554 101177869 -101150478 - L1P2 LINE L1 -540 5614 5301 1048 173 35 31 chr4 101177894 101178120 -101150227 + L1M1 LINE L1 924 1150 -6415 * 3375 193 7 49 chr4 101178114 101178802 -101149545 - L1M1 LINE L1 -6788 777 119 31 88 0 0 chr4 101179040 101179120 -101149227 + AT_rich Low_complexity Low_complexity 1 80 0 285 29 0 0 chr4 101179959 101179993 -101148354 + (CA)n Simple_repeat Simple_repeat 2 35 0 838 292 63 68 chr4 101180378 101181084 -101147263 + L2 LINE L2 2593 3306 -7 24 32 0 0 chr4 101184525 101184556 -101143791 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 101184712 101184734 -101143613 + AT_rich Low_complexity Low_complexity 1 22 0 230 200 0 18 chr4 101185297 101185352 -101142995 + T-rich Low_complexity Low_complexity 5 58 0 791 245 20 5 chr4 101185381 101185581 -101142766 + L1MEc LINE L1 40 242 -6154 1890 249 98 28 chr4 101185592 101185915 -101142432 + L1MEc LINE L1 470 769 -5627 1742 205 25 3 chr4 101185915 101186271 -101142076 + MLT1A1 LTR MaLR 1 364 -1 1890 249 98 28 chr4 101186271 101186661 -101141686 + L1MEc LINE L1 769 1233 -5163 875 186 6 12 chr4 101186734 101186895 -101141452 + FRAM SINE Alu 1 159 -17 263 259 134 45 chr4 101187844 101187956 -101140391 - MIR SINE MIR -44 218 97 268 277 72 12 chr4 101188012 101188095 -101140252 - MIR SINE MIR -97 111 24 21 0 0 0 chr4 101188305 101188326 -101140021 + AT_rich Low_complexity Low_complexity 1 21 0 1876 108 32 11 chr4 101188733 101189104 -101139243 + AluSx SINE Alu 1 377 0 683 329 24 4 chr4 101190984 101191233 -101137114 + L2 LINE L2 1984 2237 -1077 216 0 0 0 chr4 101191240 101191264 -101137083 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 923 291 67 70 chr4 101191265 101192082 -101136265 + L2 LINE L2 2512 3312 -1 637 300 94 14 chr4 101192537 101192760 -101135587 + MIR SINE MIR 20 260 -2 953 342 57 20 chr4 101193658 101194146 -101134201 + L2 LINE L2 2807 3312 -1 21 82 0 0 chr4 101194163 101194212 -101134135 + AT_rich Low_complexity Low_complexity 1 49 0 1756 162 55 28 chr4 101194234 101194598 -101133749 - THE1C LTR MaLR 0 375 2 1044 308 59 18 chr4 101196095 101196533 -101131814 + LTR16B LTR ERVL 1 456 -8 204 40 0 0 chr4 101196668 101196693 -101131654 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 188 351 9 35 chr4 101196944 101197058 -101131289 + L2 LINE L2 2964 3074 -198 195 346 19 0 chr4 101197438 101197490 -101130857 - L2 LINE L2 -109 3163 3111 2129 137 42 8 chr4 101197726 101197875 -101130472 + L1MA5 LINE L1 5886 6028 -272 2359 63 0 22 chr4 101197875 101198193 -101130154 + AluY SINE Alu 1 311 0 2129 137 42 8 chr4 101198193 101198444 -101129903 + L1MA5 LINE L1 6028 6300 0 202 316 35 0 chr4 101198707 101198764 -101129583 - L2 LINE L2 -8 3305 3247 28 86 0 0 chr4 101198876 101198946 -101129401 + AT_rich Low_complexity Low_complexity 1 70 0 22 35 0 0 chr4 101199720 101199749 -101128598 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr4 101200154 101200190 -101128157 + AT_rich Low_complexity Low_complexity 1 36 0 2162 237 63 43 chr4 101201301 101201625 -101126722 - L1MC/D LINE L1 -743 5403 5087 889 38 0 0 chr4 101201625 101201730 -101126617 - U6 snRNA snRNA -2 105 1 2162 237 63 43 chr4 101201730 101202479 -101125868 - L1MC/D LINE L1 -1059 5087 4431 * 4077 267 58 81 chr4 101202478 101204090 -101124257 + L1MC3 LINE L1 5531 7201 -584 531 229 25 0 chr4 101204090 101204212 -101124135 + MLT1F1 LTR MaLR 1 125 -442 4077 267 58 81 chr4 101204212 101204775 -101123572 + L1MC3 LINE L1 7201 7775 -10 1331 206 102 53 chr4 101205730 101206123 -101122224 + MLT1C LTR MaLR 1 412 -55 288 238 60 0 chr4 101206503 101206587 -101121760 + L1ME LINE L1 5561 5649 -472 306 341 6 60 chr4 101206743 101206925 -101121422 - L2 LINE L2 -258 3055 2884 342 0 0 0 chr4 101206973 101207011 -101121336 + (CA)n Simple_repeat Simple_repeat 2 39 0 288 0 0 0 chr4 101207283 101207315 -101121032 + (CA)n Simple_repeat Simple_repeat 1 32 0 1192 243 59 51 chr4 101207798 101208189 -101120158 - MSTD LTR MaLR 0 396 3 620 286 42 14 chr4 101208478 101208695 -101119652 - MIR SINE MIR 0 262 40 26 0 0 0 chr4 101208734 101208760 -101119587 + AT_rich Low_complexity Low_complexity 1 26 0 2289 42 7 11 chr4 101210782 101211069 -101117278 + AluY SINE Alu 23 308 -3 252 0 0 0 chr4 101212745 101212773 -101115574 + (TG)n Simple_repeat Simple_repeat 2 29 0 214 171 0 0 chr4 101212773 101212808 -101115539 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1186 214 42 93 chr4 101212895 101213367 -101114980 - MER39 LTR ERV1 -1 706 259 247 244 294 56 chr4 101215756 101215936 -101112411 - MIR SINE MIR -11 251 29 244 271 25 25 chr4 101216343 101216461 -101111886 + HAL1 LINE L1 1343 1460 -1047 237 65 0 0 chr4 101216618 101216649 -101111698 + (CA)n Simple_repeat Simple_repeat 2 32 0 1589 157 51 34 chr4 101216842 101217135 -101111212 + AluJb SINE Alu 1 298 -14 194 328 17 0 chr4 101217835 101217893 -101110454 - MIR SINE MIR -110 152 94 234 0 0 0 chr4 101217920 101217946 -101110401 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 1735 173 0 14 chr4 101217949 101218233 -101110114 - AluJo SINE Alu -29 283 4 871 316 70 50 chr4 101219002 101219106 -101109241 + MER45C DNA AcHobo 1 101 -852 2275 73 0 0 chr4 101219106 101219486 -101108861 - AluY SINE Alu 0 380 1 871 316 70 50 chr4 101219486 101219936 -101108411 + MER45C DNA AcHobo 101 568 -385 307 200 0 0 chr4 101219961 101220016 -101108331 + MER45C DNA AcHobo 899 953 0 380 271 97 69 chr4 101220017 101220277 -101108070 + L1MC4a LINE L1 5398 5573 -548 1829 120 7 10 chr4 101220277 101220576 -101107771 + AluY SINE Alu 1 298 -13 380 271 97 69 chr4 101220576 101220829 -101107518 + L1MC4a LINE L1 5573 5817 -304 808 226 185 10 chr4 101221042 101221334 -101107013 - MER2 DNA MER2_type -1 344 2 366 147 0 0 chr4 101221334 101221402 -101106945 + (TA)n Simple_repeat Simple_repeat 2 69 0 2215 84 3 7 chr4 101221534 101221833 -101106514 - AluSg1 SINE Alu -11 298 1 201 197 0 0 chr4 101224745 101224806 -101103541 + (TA)n Simple_repeat Simple_repeat 1 61 0 227 270 40 0 chr4 101224856 101224930 -101103417 - Charlie7 DNA MER1_type -2504 108 32 297 218 0 0 chr4 101225490 101225545 -101102802 - L2 LINE L2 0 3313 3259 403 301 87 47 chr4 101226495 101226748 -101101599 - MIR SINE MIR -1 261 2 2148 170 19 17 chr4 101227094 101227512 -101100835 + L1MA7 LINE L1 5848 6266 -25 267 374 38 15 chr4 101228458 101228589 -101099758 - L2 LINE L2 -1 3271 3138 21 36 0 0 chr4 101228972 101229000 -101099347 + AT_rich Low_complexity Low_complexity 1 28 0 793 184 0 20 chr4 101229627 101229774 -101098573 - LTR39 LTR ERV1 -63 720 577 4924 158 24 12 chr4 101229779 101230681 -101097666 - L1PA16 LINE L1 0 6166 5254 1119 267 78 42 chr4 101231400 101231760 -101096587 + MLT1E2 LTR MaLR 162 534 -92 785 321 25 4 chr4 101231859 101232099 -101096248 + MIR SINE MIR 15 259 -3 399 290 10 0 chr4 101232678 101232778 -101095569 - MER5A DNA MER1_type -83 106 6 363 296 11 40 chr4 101234434 101234610 -101093737 + CT-rich Low_complexity Low_complexity 3 173 0 417 209 58 29 chr4 101234844 101234983 -101093364 - MER69 DNA AcHobo 0 2526 2384 334 182 0 0 chr4 101235135 101235190 -101093157 - MER69 DNA AcHobo -122 55 1 1085 137 65 92 chr4 101235253 101235545 -101092802 - L1MA8 LINE L1 -4 6287 6004 5297 188 50 38 chr4 101236714 101238062 -101090285 - L1MC1 LINE L1 -5 6328 4953 1695 191 3 3 chr4 101238062 101238371 -101089976 - AluJo SINE Alu -3 309 1 5297 188 50 38 chr4 101238371 101239258 -101089089 - L1MC1 LINE L1 -1380 4953 4077 1515 138 44 51 chr4 101239229 101239270 -101089077 - L1P4 LINE L1 -404 5759 5719 * 1472 94 5 5 chr4 101239270 101239483 -101088864 - L1PA13 LINE L1 -19 6144 5932 1515 138 44 51 chr4 101239483 101239737 -101088610 - L1P4 LINE L1 -444 5719 5466 2317 103 0 0 chr4 101239737 101240049 -101088298 + AluSx SINE Alu 1 312 0 4173 189 27 10 chr4 101240050 101240965 -101087382 + L1P LINE L1 2820 3750 -2396 1742 204 41 37 chr4 101240959 101241421 -101086926 - L1MC1 LINE L1 -2062 4084 3621 * 217 282 61 69 chr4 101241509 101241640 -101086707 - MIR SINE MIR -11 251 122 721 300 48 28 chr4 101242168 101242418 -101085929 - MIR SINE MIR -5 257 3 266 274 124 54 chr4 101243013 101243180 -101085167 + MIR SINE MIR 85 262 0 28 61 0 0 chr4 101243187 101243236 -101085111 + AT_rich Low_complexity Low_complexity 1 49 0 38 0 0 0 chr4 101243279 101243317 -101085030 + AT_rich Low_complexity Low_complexity 1 38 0 2305 63 10 7 chr4 101245279 101245580 -101082767 + AluSc SINE Alu 1 302 -7 185 256 0 0 chr4 101245807 101245846 -101082501 + L2 LINE L2 3259 3297 -16 302 267 52 26 chr4 101246658 101246774 -101081573 + MLT1L LTR MaLR 362 480 -135 1701 124 27 119 chr4 101246804 101247175 -101081172 - MER1B DNA MER1_type 0 337 1 312 306 48 48 chr4 101249174 101249298 -101079049 + MIR SINE MIR 95 218 -44 288 277 64 0 chr4 101250840 101250934 -101077413 + L2 LINE L2 3173 3272 0 189 321 18 0 chr4 101251115 101251171 -101077176 - MER5A DNA MER1_type -1 188 132 351 279 85 16 chr4 101251470 101251599 -101076748 - MER5A DNA MER1_type -38 151 14 643 288 68 14 chr4 101251752 101251865 -101076482 + MIR SINE MIR 11 116 -146 198 0 0 0 chr4 101251865 101251887 -101076460 + (TG)n Simple_repeat Simple_repeat 2 23 0 643 288 68 14 chr4 101251887 101251992 -101076355 + MIR SINE MIR 116 241 -21 277 340 28 21 chr4 101252653 101252794 -101075553 - L2 LINE L2 -13 3300 3159 2560 39 0 6 chr4 101252889 101253200 -101075147 - AluY SINE Alu -2 309 1 391 292 20 105 chr4 101253940 101254245 -101074102 - L2 LINE L2 0 3313 3035 493 347 84 32 chr4 101255778 101256189 -101072158 + LTR16A LTR ERVL 17 452 -5 22 0 0 0 chr4 101256920 101256942 -101071405 + AT_rich Low_complexity Low_complexity 1 22 0 1607 190 7 7 chr4 101256946 101257241 -101071106 + AluJo SINE Alu 3 297 -15 24 53 0 0 chr4 101257404 101257442 -101070905 + AT_rich Low_complexity Low_complexity 1 38 0 24 53 0 0 chr4 101257482 101257520 -101070827 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr4 101257713 101257743 -101070604 + AT_rich Low_complexity Low_complexity 1 30 0 422 305 72 27 chr4 101257863 101258086 -101070261 - L1ME3A LINE L1 -222 5948 5716 2396 74 3 0 chr4 101258165 101258462 -101069885 + AluSp SINE Alu 3 300 -13 22 35 0 0 chr4 101258731 101258760 -101069587 + AT_rich Low_complexity Low_complexity 1 29 0 222 265 24 12 chr4 101258778 101258861 -101069486 + CT-rich Low_complexity Low_complexity 2 85 0 479 278 61 19 chr4 101259436 101259648 -101068699 - L1ME LINE L1 -303 5818 5598 34 72 0 0 chr4 101259680 101259749 -101068598 + AT_rich Low_complexity Low_complexity 1 69 0 3112 210 91 40 chr4 101259868 101260860 -101067487 - Charlie1a DNA MER1_type -5 1450 409 247 334 204 22 chr4 101260923 101261596 -101066751 - L2 LINE L2 -673 2641 1847 243 170 0 0 chr4 101262484 101262531 -101065816 + CT-rich Low_complexity Low_complexity 4 50 0 1208 269 26 10 chr4 101263051 101263356 -101064991 - Charlie1a DNA MER1_type -1139 316 7 465 327 34 24 chr4 101265325 101265533 -101062814 - L2 LINE L2 -1 3312 3103 272 207 298 8 chr4 101265715 101265836 -101062511 + MIR SINE MIR 52 207 -55 222 91 0 0 chr4 101267151 101267184 -101061163 + (TG)n Simple_repeat Simple_repeat 1 33 0 24 67 0 0 chr4 101267988 101268033 -101060314 + AT_rich Low_complexity Low_complexity 1 45 0 213 39 0 0 chr4 101268592 101268618 -101059729 + (TG)n Simple_repeat Simple_repeat 2 27 0 285 339 46 9 chr4 101269311 101269420 -101058927 + L3 LINE CR1 1460 1572 -5 357 323 8 0 chr4 101269628 101269755 -101058592 - MIR SINE MIR -3 259 132 291 316 45 38 chr4 101269970 101270103 -101058244 - L2 LINE L2 0 3313 3180 225 243 97 19 chr4 101270982 101271085 -101057262 + L1ME4a LINE L1 5940 6050 -71 180 111 0 0 chr4 101271865 101271892 -101056455 + (TC)n Simple_repeat Simple_repeat 2 28 0 1748 278 86 14 chr4 101272349 101273012 -101055335 + L2 LINE L2 2134 2844 -470 850 278 22 4 chr4 101273160 101273390 -101054957 + MIR SINE MIR 2 235 -27 384 326 111 33 chr4 101273421 101273691 -101054656 + L2 LINE L2 3023 3313 0 3085 221 36 24 chr4 101274887 101275813 -101052534 + L1ME1 LINE L1 5186 6119 -47 524 261 92 7 chr4 101275701 101275854 -101052493 + L1MA10 LINE L1 6169 6334 0 * 201 74 0 0 chr4 101276554 101276581 -101051766 + (T)n Simple_repeat Simple_repeat 1 27 0 2250 243 80 60 chr4 101276900 101277764 -101050583 + L1MCb LINE L1 250 1137 -5356 1804 172 16 53 chr4 101277764 101278141 -101050206 - MLT1A1 LTR MaLR -2 363 1 2250 243 80 60 chr4 101278141 101278658 -101049689 + L1MCb LINE L1 1137 1642 -4851 495 188 69 69 chr4 101278660 101278862 -101049485 + L1MCb LINE L1 2383 2584 -3980 * 789 218 26 50 chr4 101278858 101279129 -101049218 + L1MC3 LINE L1 1471 1775 -4653 180 0 0 0 chr4 101279129 101279149 -101049198 + (A)n Simple_repeat Simple_repeat 1 20 0 774 172 0 8 chr4 101279156 101279290 -101049057 + FLAM_C SINE Alu 1 133 -10 1248 208 169 37 chr4 101279301 101279844 -101048503 + L1MC3 LINE L1 1839 2309 -4117 183 80 0 0 chr4 101279844 101279869 -101048478 + (CG)n Simple_repeat Simple_repeat 2 26 0 180 0 0 0 chr4 101279868 101279888 -101048459 + (CA)n Simple_repeat Simple_repeat 1 20 0 * 1248 208 169 37 chr4 101279869 101279896 -101048451 + L1MC3 LINE L1 2309 2492 -3934 8421 223 71 58 chr4 101279909 101284681 -101043666 + L1MC3 LINE L1 2553 7477 -588 288 286 22 22 chr4 101284681 101284772 -101043575 + MLT1F1 LTR MaLR 35 125 -442 8421 223 71 58 chr4 101284772 101285353 -101042994 + L1MC3 LINE L1 7477 8049 -16 2777 116 17 2 chr4 101285483 101285905 -101042442 + MSTA LTR MaLR 1 428 0 9296 182 17 4 chr4 101285905 101287504 -101040843 + MSTA-int LTR MaLR 1 1619 -32 2487 146 46 2 chr4 101287504 101287914 -101040433 + MSTA LTR MaLR 1 428 0 246 305 73 60 chr4 101290477 101290628 -101037719 - MIR SINE MIR -75 187 35 1979 185 3 14 chr4 101290776 101291143 -101037204 + MLT1A1 LTR MaLR 1 363 -2 241 310 40 10 chr4 101291313 101291413 -101036934 - L2 LINE L2 -1 3312 3210 471 322 169 35 chr4 101291522 101292133 -101036214 - L2 LINE L2 -275 3038 2334 24 0 0 0 chr4 101292377 101292401 -101035946 + AT_rich Low_complexity Low_complexity 1 24 0 392 278 116 30 chr4 101292412 101292610 -101035737 - L2 LINE L2 -995 2319 2105 421 263 175 12 chr4 101293259 101293419 -101034928 - MER5A DNA MER1_type 0 189 4 26 30 0 0 chr4 101295371 101295404 -101032943 + AT_rich Low_complexity Low_complexity 1 33 0 22 70 0 0 chr4 101295945 101295988 -101032359 + AT_rich Low_complexity Low_complexity 1 43 0 1339 218 56 66 chr4 101296451 101296918 -101031429 - MLT1C LTR MaLR -1 466 5 3413 151 68 52 chr4 101298011 101298762 -101029585 + L1MA6 LINE L1 5532 6294 -6 24 32 0 0 chr4 101299652 101299683 -101028664 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 101299841 101299862 -101028485 + AT_rich Low_complexity Low_complexity 1 21 0 1246 277 81 46 chr4 101300102 101300713 -101027634 + MLT1G LTR MaLR 1 590 0 23 54 0 0 chr4 101301035 101301072 -101027275 + AT_rich Low_complexity Low_complexity 1 37 0 213 246 18 18 chr4 101301435 101301492 -101026855 - MIR SINE MIR -93 169 113 1906 141 73 17 chr4 101301563 101301918 -101026429 + THE1C LTR MaLR 1 375 0 203 140 40 20 chr4 101305013 101305063 -101023284 + (CAA)n Simple_repeat Simple_repeat 2 52 0 1459 232 95 6 chr4 101305118 101305454 -101022893 + LTR32 LTR ERVL 106 471 0 762 324 11 4 chr4 101305489 101305761 -101022586 - L2 LINE L2 -583 2731 2458 346 269 88 60 chr4 101305832 101305957 -101022390 - L1ME3A LINE L1 -254 5912 5780 1482 223 44 102 chr4 101305957 101306508 -101021839 - LTR40a LTR ERVL 0 519 1 346 269 88 60 chr4 101306508 101306601 -101021746 - L1ME3A LINE L1 -386 5780 5691 706 194 0 0 chr4 101306609 101306733 -101021614 - FLAM_C SINE Alu -19 124 1 249 385 14 0 chr4 101306807 101306950 -101021397 - L1ME3A LINE L1 -2252 5556 5412 342 279 86 68 chr4 101307010 101307290 -101021057 - L1ME3A LINE L1 -820 5326 5042 215 271 94 42 chr4 101307889 101307985 -101020362 + L2 LINE L2 2594 2694 -620 261 0 0 0 chr4 101308226 101308255 -101020092 + (CA)n Simple_repeat Simple_repeat 1 29 0 409 139 28 74 chr4 101308917 101309025 -101019322 - MER53 DNA DNA -29 160 58 244 223 31 8 chr4 101309122 101309252 -101019095 + (TA)n Simple_repeat Simple_repeat 1 133 0 505 169 99 42 chr4 101309285 101309427 -101018920 + MER53 DNA DNA 37 186 -3 1341 227 47 4 chr4 101309767 101310189 -101018158 - MER89 LTR ERV1 -19 540 1 23 33 0 0 chr4 101310282 101310312 -101018035 + AT_rich Low_complexity Low_complexity 1 30 0 701 191 0 62 chr4 101311424 101311586 -101016761 - LTR32 LTR ERVL -1 470 319 1819 176 33 9 chr4 101311642 101311972 -101016375 - LTR32 LTR ERVL -119 352 15 257 219 31 42 chr4 101313397 101313493 -101014854 + LTR16A1 LTR ERVL 265 359 -98 22 0 0 0 chr4 101314274 101314296 -101014051 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 101315031 101315052 -101013295 + AT_rich Low_complexity Low_complexity 1 21 0 1812 152 3 40 chr4 101315787 101316109 -101012238 - AluSx SINE Alu -2 310 1 700 190 29 27 chr4 101316109 101316276 -101012071 - LTR19C LTR ERV1 0 779 637 594 213 13 40 chr4 101316280 101316430 -101011917 - LTR9 LTR ERV1 -466 146 1 26 64 0 0 chr4 101317852 101317899 -101010448 + AT_rich Low_complexity Low_complexity 1 47 0 446 262 149 8 chr4 101317974 101318239 -101010108 - L1ME LINE L1 -569 5593 5293 423 343 101 47 chr4 101318422 101318938 -101009409 - LTR67 LTR ERVL -12 545 2 211 333 52 21 chr4 101319417 101319513 -101008834 - L2 LINE L2 0 3272 3174 28 48 0 0 chr4 101319565 101319607 -101008740 + AT_rich Low_complexity Low_complexity 1 42 0 227 388 50 21 chr4 101319632 101319872 -101008475 - L2 LINE L2 -632 2682 2436 523 259 108 26 chr4 101320062 101320294 -101008053 - LTR41 LTR ERVL -17 756 506 282 281 0 0 chr4 101320789 101320853 -101007494 - LTR41 LTR ERVL -597 176 113 2452 78 0 0 chr4 101320869 101321178 -101007169 + AluSc SINE Alu 1 309 0 370 284 110 18 chr4 101321554 101321772 -101006575 - ERVL LTR ERVL -261 5503 5266 22 35 0 0 chr4 101321907 101321936 -101006411 + AT_rich Low_complexity Low_complexity 1 29 0 552 344 77 20 chr4 101322039 101322496 -101005851 + ERVL LTR ERVL 3150 3632 -2132 241 396 57 23 chr4 101322544 101322809 -101005538 - L2 LINE L2 -429 2885 2612 621 249 140 31 chr4 101322890 101323147 -101005200 - MER2 DNA MER2_type -3 342 58 3713 184 14 44 chr4 101323149 101324029 -101004318 + L1 LINE L1 3055 3907 -2239 2520 174 63 11 chr4 101324031 101324507 -101003840 - L1M1 LINE L1 -7054 511 11 1252 246 24 63 chr4 101324680 101325143 -101003204 - L1ME1 LINE L1 -4 6162 5718 24 53 0 0 chr4 101325179 101325217 -101003130 + AT_rich Low_complexity Low_complexity 1 38 0 600 224 63 27 chr4 101325410 101325633 -101002714 + L1ME1 LINE L1 4885 5115 -1031 351 113 0 0 chr4 101325637 101325690 -101002657 + (CA)n Simple_repeat Simple_repeat 1 53 0 2520 257 39 26 chr4 101325705 101326047 -101002300 + L1ME1 LINE L1 5134 5470 -696 195 114 0 0 chr4 101326047 101326082 -101002265 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 2520 257 39 26 chr4 101326082 101326735 -101001612 + L1ME1 LINE L1 5470 6141 -25 21 0 0 0 chr4 101326735 101326756 -101001591 + AT_rich Low_complexity Low_complexity 1 21 0 519 358 136 33 chr4 101326756 101327544 -101000803 + L2 LINE L2 1893 2761 -553 1874 202 3 6 chr4 101327591 101327932 -101000415 - MLT1A1 LTR MaLR -25 340 1 306 347 51 56 chr4 101328014 101328463 -100999884 + L2 LINE L2 2833 3279 -34 21 0 0 0 chr4 101331847 101331868 -100996479 + AT_rich Low_complexity Low_complexity 1 21 0 184 352 23 11 chr4 101332744 101332832 -100995515 - L2 LINE L2 -88 3225 3137 1153 199 37 45 chr4 101333090 101333336 -100995011 - AluJo SINE Alu 0 312 69 404 203 195 17 chr4 101333336 101333454 -100994893 + MER5A DNA MER1_type 30 168 -21 21 0 0 0 chr4 101333928 101333949 -100994398 + AT_rich Low_complexity Low_complexity 1 21 0 234 423 44 0 chr4 101334989 101335171 -100993176 - MIR SINE MIR -51 211 22 212 149 21 0 chr4 101335676 101335723 -100992624 + (TA)n Simple_repeat Simple_repeat 2 49 0 405 0 0 0 chr4 101335724 101335769 -100992578 + (TAGA)n Simple_repeat Simple_repeat 3 47 0 243 321 122 41 chr4 101335821 101336042 -100992305 + MIR SINE MIR 23 261 -1 2201 86 4 0 chr4 101336854 101337133 -100991214 + AluSp SINE Alu 4 283 -30 362 332 10 49 chr4 101337861 101338091 -100990256 - MIR SINE MIR -41 221 7 205 261 0 45 chr4 101338318 101338406 -100989941 + GA-rich Low_complexity Low_complexity 1 84 0 600 364 16 10 chr4 101338888 101339196 -100989151 + MLT1K LTR MaLR 208 517 -71 287 291 83 39 chr4 101340070 101340300 -100988047 - L1MEc LINE L1 -4652 1744 1505 3788 194 61 30 chr4 101340452 101341343 -100987004 - MER49 LTR ERV1 -1 922 5 204 172 69 0 chr4 101341440 101341498 -100986849 + (TTATA)n Simple_repeat Simple_repeat 5 66 0 301 261 0 0 chr4 101341513 101341578 -100986769 - Tigger5 DNA MER2_type 0 2323 2259 1517 150 88 86 chr4 101341658 101342032 -100986315 - MSTA LTR MaLR 0 409 1 256 267 238 18 chr4 101342171 101342448 -100985899 - HAL1b LINE L1 -678 670 333 302 248 83 16 chr4 101342460 101342581 -100985766 - HAL1b LINE L1 -162 1186 1058 205 186 62 31 chr4 101342589 101342718 -100985629 + A-rich Low_complexity Low_complexity 1 133 0 508 275 69 87 chr4 101342926 101343362 -100984985 - MLT1H LTR MaLR -3 546 119 21 0 0 0 chr4 101344034 101344055 -100984292 + AT_rich Low_complexity Low_complexity 1 21 0 192 332 80 57 chr4 101345621 101345970 -100982377 + L2 LINE L2 2349 2705 -609 201 276 35 0 chr4 101346096 101346154 -100982193 - MIR SINE MIR -148 114 55 207 212 35 0 chr4 101346948 101347033 -100981314 + (TA)n Simple_repeat Simple_repeat 1 88 0 511 252 97 31 chr4 101347378 101347565 -100980782 + LTR37B LTR ERV1 194 404 -64 1787 256 52 39 chr4 101347565 101348183 -100980164 + MLT1E2 LTR MaLR 1 626 0 511 252 97 31 chr4 101348183 101348253 -100980094 + LTR37B LTR ERV1 404 468 0 252 0 0 0 chr4 101349160 101349188 -100979159 + (CA)n Simple_repeat Simple_repeat 2 29 0 2418 68 0 3 chr4 101349451 101349762 -100978585 + AluY SINE Alu 1 310 -1 223 181 28 0 chr4 101350425 101350497 -100977850 + GA-rich Low_complexity Low_complexity 1 74 0 303 329 62 7 chr4 101351651 101351797 -100976550 - MIR SINE MIR -57 205 52 2013 138 14 0 chr4 101353262 101353558 -100974789 + AluSq SINE Alu 1 300 -13 668 175 48 8 chr4 101355666 101355792 -100972555 + AluJb SINE Alu 6 136 -176 1249 100 0 0 chr4 101355885 101356069 -100972278 + AluSg/x SINE Alu 123 306 0 2108 120 50 31 chr4 101356534 101356891 -100971456 + THE1B LTR MaLR 1 364 0 10647 114 17 2 chr4 101356891 101358447 -100969900 + THE1B-int LTR MaLR 1 1580 0 1996 135 53 31 chr4 101358447 101358803 -100969544 + THE1B LTR MaLR 1 364 0 198 227 0 23 chr4 101358838 101358882 -100969465 + MIR SINE MIR 116 158 -104 270 81 0 0 chr4 101359170 101359207 -100969140 + (TA)n Simple_repeat Simple_repeat 2 38 0 263 294 65 41 chr4 101359431 101359601 -100968746 - MIR SINE MIR -15 247 74 37 69 0 0 chr4 101360027 101360099 -100968248 + AT_rich Low_complexity Low_complexity 1 72 0 187 280 161 0 chr4 101360327 101360420 -100967927 - MIR SINE MIR -54 208 101 31 44 0 0 chr4 101360672 101360717 -100967630 + AT_rich Low_complexity Low_complexity 1 45 0 231 195 0 0 chr4 101361806 101361847 -100966500 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 24 0 0 0 chr4 101362907 101362931 -100965416 + AT_rich Low_complexity Low_complexity 1 24 0 300 287 28 9 chr4 101363085 101363193 -100965154 - L1ME LINE L1 -391 5730 5621 254 218 218 68 chr4 101363203 101363336 -100965011 - MIR SINE MIR -31 231 79 1038 253 49 52 chr4 101365120 101365567 -100962780 + LTR16A1 LTR ERVL 12 457 0 23 54 0 0 chr4 101367760 101367797 -100960550 + AT_rich Low_complexity Low_complexity 1 37 0 336 299 134 22 chr4 101367993 101368127 -100960220 + MIR SINE MIR 81 229 -33 186 362 38 19 chr4 101368221 101368326 -100960021 + MIR SINE MIR 28 134 -128 1957 104 17 20 chr4 101368380 101368677 -100959670 + AluSx SINE Alu 1 296 -16 1401 211 3 16 chr4 101368748 101369070 -100959277 - AluJb SINE Alu 0 312 4 22 35 0 0 chr4 101369163 101369192 -100959155 + AT_rich Low_complexity Low_complexity 1 29 0 235 345 63 21 chr4 101370336 101370478 -100957869 - MLT1K LTR MaLR -218 370 223 703 261 79 30 chr4 101370976 101371370 -100956977 - L1MC5 LINE L1 -428 7533 7121 438 231 8 8 chr4 101371456 101371573 -100956774 - L1MC5 LINE L1 -851 7110 6994 573 254 121 59 chr4 101371574 101371881 -100956466 + MLT2C1 LTR ERVL 1 326 -71 24 0 0 0 chr4 101371926 101371950 -100956397 + AT_rich Low_complexity Low_complexity 1 24 0 339 222 47 18 chr4 101371975 101372146 -100956201 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 21 0 0 0 chr4 101372171 101372192 -100956155 + AT_rich Low_complexity Low_complexity 1 21 0 997 335 43 14 chr4 101372276 101372787 -100955560 + ERVL LTR ERVL 34 574 -5101 1928 122 0 0 chr4 101372789 101373051 -100955296 + AluSg SINE Alu 4 265 -45 1682 88 8 29 chr4 101373051 101373290 -100955057 - THE1A LTR MaLR -121 234 1 14666 241 44 22 chr4 101373295 101375886 -100952461 + ERVL LTR ERVL 826 3525 -2239 393 39 0 0 chr4 101375886 101375937 -100952410 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 14666 241 44 22 chr4 101375937 101377097 -100951250 + ERVL LTR ERVL 3525 4658 -1106 27 29 0 0 chr4 101377437 101377471 -100950876 + AT_rich Low_complexity Low_complexity 1 34 0 21 57 0 0 chr4 101377593 101377628 -100950719 + AT_rich Low_complexity Low_complexity 1 35 0 2358 87 0 3 chr4 101377715 101378025 -100950322 + AluY SINE Alu 1 309 -2 4571 255 14 16 chr4 101378502 101380069 -100948278 + L1PA11 LINE L1 1749 3313 -3536 6427 162 81 30 chr4 101380088 101381625 -100946722 + L1PA11 LINE L1 4389 6104 -773 1827 140 0 14 chr4 101381625 101381903 -100946444 + AluSg SINE Alu 37 310 0 6427 162 81 30 chr4 101381903 101382718 -100945629 + L1PA11 LINE L1 6104 6876 -1 229 372 23 8 chr4 101382721 101382850 -100945497 - L1MEd LINE L1 -5701 418 288 221 0 0 33 chr4 101383080 101383110 -100945237 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1392 121 9 0 chr4 101383110 101383325 -100945022 - L1PB1 LINE L1 -6 6145 5929 25 0 0 0 chr4 101383704 101383729 -100944618 + AT_rich Low_complexity Low_complexity 1 25 0 4812 156 27 90 chr4 101383741 101384783 -100943564 - L1MA4 LINE L1 -49 6251 5230 549 155 10 0 chr4 101384781 101384878 -100943469 + L1 LINE L1 4141 4238 -1908 * 17755 31 4 0 chr4 101384874 101387806 -100940541 + L1PA3 LINE L1 3223 6167 0 4337 179 64 7 chr4 101387810 101388737 -100939610 + L1 LINE L1 4235 5214 -932 245 406 24 6 chr4 101388749 101388914 -100939433 + L1MC1 LINE L1 157 324 -5746 3779 154 9 2 chr4 101388938 101389568 -100938779 + L1PA15 LINE L1 5531 6165 0 254 188 0 16 chr4 101389620 101389684 -100938663 + L1 LINE L1 4478 4540 -1606 2357 213 19 13 chr4 101389749 101390218 -100938129 - MER70A LTR ERVL 0 472 1 348 309 71 5 chr4 101390238 101390448 -100937899 + L1MC1 LINE L1 3348 3571 -2509 21 0 0 0 chr4 101391684 101391705 -100936642 + AT_rich Low_complexity Low_complexity 1 21 0 460 308 62 0 chr4 101392065 101392195 -100936152 + MLT1J2 LTR MaLR 26 163 -287 2923 152 42 24 chr4 101392196 101392737 -100935610 + MER34C LTR ERV1 35 585 0 805 209 99 21 chr4 101393166 101393357 -100934990 + LTR40a LTR ERVL 314 519 0 267 255 53 43 chr4 101393616 101393710 -100934637 - MIR SINE MIR -28 234 140 252 0 0 0 chr4 101394001 101394029 -100934318 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3413 217 15 13 chr4 101395582 101396462 -100931885 + L1MC1 LINE L1 4751 5633 -634 3984 167 68 3 chr4 101396462 101397197 -100931150 - LTR39 LTR ERV1 0 783 1 3413 217 15 13 chr4 101397197 101397437 -100930910 + L1MC1 LINE L1 5633 5871 -396 195 69 0 0 chr4 101397825 101397854 -100930493 + (T)n Simple_repeat Simple_repeat 1 29 0 718 158 0 16 chr4 101398170 101398297 -100930050 + 7SK RNA RNA 1 125 -68 541 59 0 0 chr4 101398340 101398408 -100929939 + 7SK RNA RNA 126 193 0 226 270 108 36 chr4 101398569 101398680 -100929667 - MLT1L LTR MaLR -348 267 149 460 219 61 55 chr4 101399060 101399224 -100929123 + LTR43 LTR ERV1 179 343 -259 21 0 0 0 chr4 101399516 101399537 -100928810 + AT_rich Low_complexity Low_complexity 1 21 0 1133 272 104 43 chr4 101399762 101400251 -100928096 + MLT1E LTR MaLR 75 593 0 198 0 0 0 chr4 101400560 101400582 -100927765 + (A)n Simple_repeat Simple_repeat 1 22 0 271 329 93 29 chr4 101400852 101400992 -100927355 + L2 LINE L2 2883 3031 -282 27 29 0 0 chr4 101401052 101401086 -100927261 + AT_rich Low_complexity Low_complexity 1 34 0 230 222 278 19 chr4 101402429 101402537 -100925810 - L2 LINE L2 -20 3293 3158 965 110 19 0 chr4 101402739 101402894 -100925453 - L1MA5 LINE L1 -2 6298 6141 334 283 72 7 chr4 101404731 101404883 -100923464 - L1ME LINE L1 -351 5770 5609 3143 158 30 2 chr4 101405736 101406275 -100922072 + MER41C LTR ERV1 1 554 0 30 45 0 0 chr4 101407860 101407904 -100920443 + AT_rich Low_complexity Low_complexity 1 44 0 24 32 0 0 chr4 101408281 101408312 -100920035 + AT_rich Low_complexity Low_complexity 1 31 0 238 193 35 0 chr4 101408322 101408379 -100919968 + L1M4 LINE L1 5183 5241 -905 33 43 0 0 chr4 101408555 101408602 -100919745 + AT_rich Low_complexity Low_complexity 1 47 0 239 225 0 42 chr4 101409209 101409280 -100919067 - MLT1L LTR MaLR -342 273 206 295 282 0 13 chr4 101409360 101409438 -100918909 - MLT1J LTR MaLR -433 78 2 2898 76 20 10 chr4 101409898 101410294 -100918053 + MLT2A1 LTR ERVL 1 400 -44 629 330 76 13 chr4 101410692 101410995 -100917352 - MLT1I LTR MaLR -1 408 87 3641 202 61 14 chr4 101411593 101412794 -100915553 + L1MB7 LINE L1 4864 6129 -55 2686 3 0 3 chr4 101412794 101413090 -100915257 + AluYb8 SINE Alu 24 318 0 3641 202 61 14 chr4 101413090 101413139 -100915208 + L1MB7 LINE L1 6129 6174 -10 418 234 112 73 chr4 101413249 101413404 -100914943 + L1MB7 LINE L1 5962 6128 -56 1812 145 0 3 chr4 101413404 101413700 -100914647 + AluYb8 SINE Alu 24 318 0 418 234 112 73 chr4 101413700 101413749 -100914598 + L1MB7 LINE L1 6128 6174 -10 183 42 0 0 chr4 101413778 101413802 -100914545 + (TA)n Simple_repeat Simple_repeat 1 24 0 28 61 0 0 chr4 101414924 101414973 -100913374 + AT_rich Low_complexity Low_complexity 1 49 0 28 29 0 0 chr4 101416553 101416588 -100911759 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr4 101416756 101416791 -100911556 + AT_rich Low_complexity Low_complexity 1 35 0 724 200 0 0 chr4 101416792 101416912 -100911435 - FLAM_C SINE Alu -12 121 2 3855 141 32 6 chr4 101416924 101417617 -100910730 - L1PB4 LINE L1 0 6872 6162 3414 211 19 8 chr4 101417627 101418373 -100909974 - L1PB4 LINE L1 -1830 5032 4279 469 207 67 7 chr4 101418369 101418504 -100909843 - L1PB4 LINE L1 -3682 3180 3038 * 427 210 30 0 chr4 101418490 101418590 -100909757 - L1PB4 LINE L1 -3710 3152 3050 * 4181 261 42 30 chr4 101418573 101420591 -100907756 - L1PB4 LINE L1 -3697 3165 1256 505 300 53 60 chr4 101420562 101420992 -100907355 - L1PB4 LINE L1 -5461 1402 976 * 22 0 0 0 chr4 101421656 101421678 -100906669 + AT_rich Low_complexity Low_complexity 1 22 0 357 314 49 54 chr4 101422049 101422253 -100906094 + L3 LINE CR1 511 713 -864 294 362 76 34 chr4 101422455 101422864 -100905483 + L2 LINE L2 2813 3238 -75 1318 239 79 52 chr4 101423114 101423595 -100904752 + MLT1D LTR MaLR 12 505 0 337 169 0 0 chr4 101423618 101423677 -100904670 + MLT1D LTR MaLR 447 505 0 324 186 0 0 chr4 101423700 101423759 -100904588 + MLT1D LTR MaLR 447 505 0 324 194 11 7 chr4 101423759 101423841 -100904506 + MLT1D LTR MaLR 451 505 0 324 186 0 0 chr4 101423864 101423923 -100904424 + MLT1D LTR MaLR 447 505 0 515 353 60 15 chr4 101423937 101424203 -100904144 + L3 LINE CR1 727 1004 -573 896 273 155 3 chr4 101424686 101425041 -100903306 + MLT1I LTR MaLR 1 409 0 1872 111 0 4 chr4 101426590 101426851 -100901496 + AluSg SINE Alu 43 302 -8 6404 144 59 9 chr4 101427092 101428265 -100900082 - Tigger3b DNA MER2_type 0 1231 1 8630 56 2 1 chr4 101430419 101431489 -100896858 - MER11C LTR ERVK 0 1071 1 1889 153 3 45 chr4 101431853 101432205 -100896142 - MER1B DNA MER1_type 0 337 1 459 275 31 88 chr4 101432693 101432886 -100895461 - L2 LINE L2 0 3272 3091 3555 128 63 55 chr4 101433035 101433721 -100894626 - LTR8 LTR ERV1 0 691 1 2642 35 0 6 chr4 101433819 101434132 -100894215 + AluY SINE Alu 1 311 0 2159 133 0 3 chr4 101434267 101434576 -100893771 + AluSg SINE Alu 1 308 -2 25 65 0 0 chr4 101435027 101435073 -100893274 + AT_rich Low_complexity Low_complexity 1 46 0 503 212 252 0 chr4 101435861 101436012 -100892335 + MER5A DNA MER1_type 1 189 0 213 321 45 22 chr4 101436098 101436232 -100892115 + L2 LINE L2 3170 3306 -7 403 260 6 94 chr4 101437059 101437186 -100891161 - MER115 DNA AcHobo 0 693 585 2199 103 0 3 chr4 101437186 101437478 -100890869 - AluSc SINE Alu -18 291 1 403 260 6 94 chr4 101437478 101437531 -100890816 - MER115 DNA AcHobo -108 585 529 500 354 24 14 chr4 101437718 101437927 -100890420 - MER115 DNA AcHobo -449 244 34 1007 306 89 39 chr4 101439978 101440212 -100888135 - MLT2F LTR ERVL -11 652 431 2589 137 26 0 chr4 101440212 101440627 -100887720 + MSTA LTR MaLR 1 426 -2 1007 306 89 39 chr4 101440627 101440964 -100887383 - MLT2F LTR ERVL -232 431 52 23 33 0 0 chr4 101542146 101542176 -100786171 + AT_rich Low_complexity Low_complexity 1 30 0 845 286 152 19 chr4 101543214 101543907 -100784440 - L1M4 LINE L1 -866 5280 4496 813 21 0 0 chr4 101543982 101544077 -100784270 - L1PA4 LINE L1 -13 6142 6048 995 290 44 29 chr4 101544155 101544605 -100783742 - L1M4 LINE L1 -1853 4293 3832 1693 191 35 19 chr4 101544605 101544972 -100783375 + THE1C LTR MaLR 3 375 0 995 290 44 29 chr4 101544972 101545045 -100783302 - L1M4 LINE L1 -2314 3832 3762 21 36 0 0 chr4 101545045 101545073 -100783274 + AT_rich Low_complexity Low_complexity 1 28 0 273 267 50 43 chr4 101545091 101545349 -100782998 - L1MEd LINE L1 -4965 1154 895 1842 193 22 3 chr4 101545484 101545842 -100782505 + MLT1A1 LTR MaLR 1 365 0 4544 244 66 53 chr4 101545976 101547733 -100780614 - Charlie6 DNA MER1_type -1403 2097 292 2551 119 14 0 chr4 101547733 101548103 -100780244 + THE1C LTR MaLR 1 375 0 4544 244 66 53 chr4 101548103 101548400 -100779947 - Charlie6 DNA MER1_type -3208 292 1 2373 99 0 3 chr4 101548405 101548719 -100779628 + AluSp SINE Alu 1 313 0 270 0 0 0 chr4 101548895 101548925 -100779422 + (TG)n Simple_repeat Simple_repeat 2 31 0 914 258 99 36 chr4 101549746 101550161 -100778186 - MLT1D LTR MaLR 0 505 65 1263 228 25 153 chr4 101550197 101550745 -100777602 - MLT1D-int LTR MaLR -1 1370 893 876 278 43 75 chr4 101550861 101551235 -100777112 - MLT1D-int LTR MaLR -476 895 534 1935 258 60 88 chr4 101551238 101552043 -100776304 - MER21B LTR ERV1 -81 782 1 642 239 53 64 chr4 101552525 101552713 -100775634 - MER5A DNA MER1_type -2 187 2 470 297 148 0 chr4 101552740 101552895 -100775452 + MER5A DNA MER1_type 12 189 0 581 198 186 6 chr4 101553167 101553344 -100775003 - MER3 DNA MER1_type 0 209 1 1926 132 11 3 chr4 101553834 101554121 -100774226 - AluSp SINE Alu -20 293 5 286 297 8 34 chr4 101554371 101554489 -100773858 + MER46C DNA MER2_type 6 120 -218 354 98 0 0 chr4 101554515 101554566 -100773781 + (CA)n Simple_repeat Simple_repeat 2 52 0 334 250 0 0 chr4 101554860 101554924 -100773423 + MER46C DNA MER2_type 162 225 -113 216 176 71 0 chr4 101556067 101556152 -100772195 + (TA)n Simple_repeat Simple_repeat 1 91 0 934 113 0 43 chr4 101556884 101557025 -100771322 + AluJb SINE Alu 1 135 -177 785 238 0 0 chr4 101557362 101557530 -100770817 + MLT1A1 LTR MaLR 146 313 -52 29 0 0 0 chr4 101557530 101557559 -100770788 + AT_rich Low_complexity Low_complexity 1 29 0 216 273 15 30 chr4 101557565 101557631 -100770716 - MER5A DNA MER1_type -123 66 2 181 345 71 18 chr4 101557631 101557744 -100770603 - MIR3 SINE MIR -36 172 54 30 59 0 0 chr4 101557775 101557826 -100770521 + AT_rich Low_complexity Low_complexity 1 51 0 467 299 58 11 chr4 101557968 101558142 -100770205 - MIR SINE MIR 0 262 81 383 155 11 46 chr4 101558795 101558969 -100769378 + (TA)n Simple_repeat Simple_repeat 2 169 0 1542 152 67 64 chr4 101559311 101559685 -100768662 - THE1C LTR MaLR 0 375 1 202 207 35 17 chr4 101560832 101560890 -100767457 - L3 LINE CR1 -865 712 654 452 350 129 26 chr4 101560896 101561284 -100767063 + L2 LINE L2 2316 2743 -571 1608 225 87 7 chr4 101562926 101563339 -100765008 + MER110 LTR ERV1 46 491 0 331 283 138 28 chr4 101563382 101563527 -100764820 + MIR SINE MIR 47 207 -55 485 283 66 26 chr4 101563551 101563703 -100764644 - MIR SINE MIR -62 200 43 23 33 0 0 chr4 101566412 101566442 -100761905 + AT_rich Low_complexity Low_complexity 1 30 0 2325 198 33 16 chr4 101566707 101567182 -100761165 - L1PA15-16 LINE L1 -2329 5255 4789 183 42 0 0 chr4 101567182 101567206 -100761141 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2325 198 33 16 chr4 101567206 101567232 -100761115 - L1PA15-16 LINE L1 -2795 4789 4765 1823 155 37 37 chr4 101567232 101567607 -100760740 + THE1C LTR MaLR 1 375 0 2325 198 33 16 chr4 101567607 101567649 -100760698 - L1PA15-16 LINE L1 -2819 4765 4702 5255 117 8 9 chr4 101567658 101567951 -100760396 - L1PA14 LINE L1 -1 6160 5868 2048 126 3 3 chr4 101567951 101568245 -100760102 - AluSx SINE Alu -17 295 2 5255 117 8 9 chr4 101568245 101569512 -100758835 - L1PA14 LINE L1 -293 5868 4562 1802 151 43 62 chr4 101569513 101569884 -100758463 + THE1B LTR MaLR 1 364 0 6085 112 6 0 chr4 101569884 101570740 -100757607 + THE1B-int LTR MaLR 1 861 -719 * 10079 184 51 13 chr4 101570736 101573718 -100754629 - L1PA12 LINE L1 -3903 3681 2 7337 238 16 12 chr4 101573723 101574627 -100753720 - L1PA15-16 LINE L1 -2884 4700 3801 1982 164 0 0 chr4 101574627 101574938 -100753409 - AluSx SINE Alu -1 311 1 7337 238 16 12 chr4 101574938 101576331 -100752016 - L1PA15-16 LINE L1 -3783 3801 2404 419 296 30 63 chr4 101577436 101577798 -100750549 - L1PA15-16 LINE L1 -7231 350 1 469 302 86 50 chr4 101577973 101578195 -100750152 + MIR SINE MIR 20 249 -13 1296 218 108 21 chr4 101578362 101578789 -100749558 - MER110A LTR ERV1 -4 464 1 28 29 0 0 chr4 101578992 101579027 -100749320 + AT_rich Low_complexity Low_complexity 1 35 0 1109 281 25 0 chr4 101579468 101579742 -100748605 + L1MD2 LINE L1 17 297 -6112 4152 239 46 25 chr4 101579766 101580057 -100748290 + L1MD2 LINE L1 4619 4902 -1717 1975 141 10 16 chr4 101580057 101580370 -100747977 + AluSx SINE Alu 1 311 -1 4152 239 46 25 chr4 101580370 101581801 -100746546 + L1MD2 LINE L1 4902 6426 -193 348 64 0 0 chr4 101581801 101581848 -100746499 + (CA)n Simple_repeat Simple_repeat 2 48 0 4152 239 46 25 chr4 101581848 101582041 -100746306 + L1MD2 LINE L1 6426 6613 -6 2130 124 0 0 chr4 101582041 101582347 -100746000 + AluSx SINE Alu 1 306 0 210 305 32 91 chr4 101582938 101583125 -100745222 - L2 LINE L2 -769 2545 2370 256 243 0 75 chr4 101584221 101584328 -100744019 + GA-rich Low_complexity Low_complexity 3 101 0 21 36 0 0 chr4 101584493 101584521 -100743826 + AT_rich Low_complexity Low_complexity 1 28 0 2484 68 3 0 chr4 101584942 101585251 -100743096 - AluY SINE Alu -1 310 1 359 240 24 24 chr4 101586181 101586306 -100742041 - L1MEc LINE L1 -4581 1815 1691 999 241 37 71 chr4 101586536 101586943 -100741404 + MER39 LTR ERV1 315 707 0 560 316 69 61 chr4 101587118 101587710 -100740637 - L1MEc LINE L1 -5473 732 136 573 132 55 0 chr4 101588190 101588281 -100740066 + HY3 scRNA scRNA 1 96 -5 22 0 0 0 chr4 101588503 101588525 -100739822 + AT_rich Low_complexity Low_complexity 1 22 0 1553 175 70 32 chr4 101589790 101590132 -100738215 - THE1A LTR MaLR 0 355 1 11454 105 9 0 chr4 101590132 101591698 -100736649 - THE1B-int LTR MaLR 0 1580 1 1901 147 44 36 chr4 101591698 101592059 -100736288 - THE1B LTR MaLR 0 364 1 458 299 128 13 chr4 101592080 101592314 -100736033 - Charlie2 DNA MER1_type -2557 305 45 2051 125 3 3 chr4 101592571 101592915 -100735432 + AluSq SINE Alu 1 344 0 1337 200 60 38 chr4 101593421 101593821 -100734526 - LTR37A LTR ERV1 -3 423 15 3710 147 59 10 chr4 101594445 101595119 -100733228 - MER39 LTR ERV1 0 707 1 1305 130 4 4 chr4 101597326 101597556 -100730791 - L1MA2 LINE L1 0 6304 6075 1482 97 4 8 chr4 101597565 101597806 -100730541 - L1MA2 LINE L1 -299 6006 5692 20526 175 16 33 chr4 101597806 101599437 -100728910 - L1 LINE L1 -1136 6429 4771 1674 173 171 11 chr4 101599437 101599806 -100728541 + MSTA LTR MaLR 1 428 0 9178 152 3 44 chr4 101599808 101601214 -100727133 + MSTA-int LTR MaLR 3 1334 -246 1774 96 0 0 chr4 101601214 101601443 -100726904 + AluY SINE Alu 83 311 0 9178 152 3 44 chr4 101601443 101601681 -100726666 + MSTA-int LTR MaLR 1334 1580 0 2037 139 133 16 chr4 101601682 101602064 -100726283 + MSTA LTR MaLR 2 428 0 20526 175 16 33 chr4 101602064 101602361 -100725986 - L1 LINE L1 -2795 4770 4469 2069 137 8 40 chr4 101602361 101602763 -100725584 - L1MA1 LINE L1 0 6302 5914 20526 175 16 33 chr4 101602763 101607356 -100720991 - L1 LINE L1 -3096 4469 16 1160 257 69 72 chr4 101607358 101607938 -100720409 - L1ME LINE L1 -5234 836 259 1327 176 8 41 chr4 101607988 101608233 -100720114 + AluJb SINE Alu 1 237 -75 534 208 47 25 chr4 101608391 101608611 -100719736 - LTR48 LTR ERV1 0 729 572 612 244 153 6 chr4 101608636 101608812 -100719535 - LTR29 LTR ERV1 -292 330 129 318 241 0 46 chr4 101608806 101608893 -100719454 - MER34 LTR ERV1 -437 105 23 * 310 228 76 22 chr4 101610091 101610183 -100718164 - L1ME LINE L1 -5925 145 49 2761 94 9 7 chr4 101610396 101611017 -100717330 - PABL_B LTR ERV1 0 667 1 531 181 71 45 chr4 101611175 101611330 -100717017 - LTR45B LTR ERV1 0 489 331 292 285 31 46 chr4 101611733 101611765 -100716582 - MIR SINE MIR -38 224 193 2228 166 8 3 chr4 101611765 101612127 -100716220 + THE1B LTR MaLR 1 364 0 292 285 31 46 chr4 101612127 101612224 -100716123 - MIR SINE MIR -69 193 97 2387 196 87 44 chr4 101612291 101612969 -100715378 + MER39 LTR ERV1 1 707 0 2123 128 25 33 chr4 101614524 101614884 -100713463 - THE1B LTR MaLR -7 357 1 5304 223 56 32 chr4 101616158 101619081 -100709266 + L1MA5 LINE L1 1 2853 -4355 2039 79 0 82 chr4 101619081 101619421 -100708926 - AluY SINE Alu 0 318 4 5304 223 56 32 chr4 101619421 101619561 -100708786 + L1MA5 LINE L1 2853 2988 -4220 1246 241 41 21 chr4 101619561 101619680 -100708667 + AluJo SINE Alu 3 118 -194 208 51 26 26 chr4 101619680 101619719 -100708628 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1246 241 41 21 chr4 101619719 101619890 -100708457 + AluJo SINE Alu 118 299 -13 5304 223 56 32 chr4 101619890 101620299 -100708048 + L1MA5 LINE L1 2988 4513 -2695 474 246 0 8 chr4 101620293 101620411 -100707936 + L1MA5 LINE L1 4811 4927 -2281 * 3373 123 10 4 chr4 101620412 101620909 -100707438 - LTR3b LTR ERVK 0 500 1 1915 188 11 0 chr4 101620910 101621267 -100707080 + L1MA5 LINE L1 4924 5284 -1924 6782 59 11 25 chr4 101621267 101622552 -100705795 - L1PA8 LINE L1 -2 6170 4883 8195 98 3 1 chr4 101622554 101623723 -100704624 + L1PA8 LINE L1 3695 4866 -1280 2699 195 18 22 chr4 101623777 101624408 -100703939 + L1MA5 LINE L1 5783 6421 -941 1799 175 0 7 chr4 101624408 101624699 -100703648 + AluJo SINE Alu 1 289 -23 2699 195 18 22 chr4 101624699 101624946 -100703401 + L1MA5 LINE L1 6421 6667 -695 2653 170 9 15 chr4 101624957 101625491 -100702856 + L1MA5 LINE L1 6832 7362 0 1834 164 17 29 chr4 101626556 101626903 -100701444 + MER61A LTR ERV1 1 343 0 230 57 29 0 chr4 101626980 101627015 -100701332 - MADE1 DNA Mariner -44 36 1 275 181 32 57 chr4 101627030 101627128 -100701219 - MLT1I LTR MaLR 0 578 449 312 341 49 56 chr4 101627171 101627455 -100700892 - MLT1I LTR MaLR -109 300 19 1322 173 20 12 chr4 101628567 101628815 -100699532 - AluJo SINE Alu 0 312 63 226 277 95 68 chr4 101629261 101629409 -100698938 - MLT1H LTR MaLR -304 245 94 354 279 77 59 chr4 101631726 101631948 -100696399 - MIR SINE MIR -7 255 30 352 305 113 70 chr4 101632385 101632687 -100695660 - L1MEd LINE L1 -5514 605 291 2149 258 142 21 chr4 101632917 101633182 -100695165 + L1MEc LINE L1 841 1073 -5323 2282 91 3 0 chr4 101633182 101633480 -100694867 + AluSc SINE Alu 7 305 -4 2149 258 142 21 chr4 101633480 101633936 -100694411 + L1MEc LINE L1 1073 1472 -4924 510 194 0 0 chr4 101633936 101634044 -100694303 + L1MB5 LINE L1 6059 6166 -8 2149 258 142 21 chr4 101634044 101634585 -100693762 + L1MEc LINE L1 1472 2257 -4139 * 14867 176 88 52 chr4 101634581 101640079 -100688268 + L1MA1 LINE L1 9 5709 -1856 5949 113 22 11 chr4 101640076 101640859 -100687488 + L1MA1 LINE L1 6771 7568 -153 * 2146 68 8 0 chr4 101640859 101641122 -100687225 + AluY SINE Alu 35 299 -12 5949 113 22 11 chr4 101641122 101641277 -100687070 + L1MA1 LINE L1 7568 7720 -1 1953 255 47 23 chr4 101641276 101641437 -100686910 + L1MEc LINE L1 2200 2356 -3859 * 1031 207 148 23 chr4 101641437 101641742 -100686605 + MER2 DNA MER2_type 1 343 -1 1953 255 47 23 chr4 101641742 101642397 -100685950 + L1MEc LINE L1 2356 3035 -3180 1053 237 118 47 chr4 101642418 101642647 -100685700 + L1MEc LINE L1 3353 3564 -2651 189 0 0 0 chr4 101642647 101642668 -100685679 + (CA)n Simple_repeat Simple_repeat 2 22 0 1053 237 118 47 chr4 101642668 101642974 -100685373 + L1MEc LINE L1 3564 3926 -2289 1007 253 14 67 chr4 101642971 101643327 -100685020 + L1ME1 LINE L1 16 352 -6190 * 1372 234 72 41 chr4 101643330 101644016 -100684331 + L1ME1 LINE L1 5286 5988 -676 272 195 46 0 chr4 101644106 101644193 -100684154 - L1M4 LINE L1 -841 5305 5215 311 239 11 11 chr4 101644198 101644286 -100684061 + MLT1C LTR MaLR 66 153 -314 2023 169 2 66 chr4 101644296 101644692 -100683655 - MLT1B LTR MaLR 0 390 20 321 207 0 0 chr4 101644691 101644749 -100683598 + MLT1C LTR MaLR 29 86 -381 * 1105 239 56 11 chr4 101644775 101645060 -100683287 + MLT1C LTR MaLR 162 459 -8 437 165 180 9 chr4 101645069 101645180 -100683167 + L1ME1 LINE L1 5984 6116 -562 694 287 6 0 chr4 101645180 101645344 -100683003 - MER41D LTR ERV1 0 557 393 1458 272 33 31 chr4 101645739 101646280 -100682067 + L1ME1 LINE L1 6119 6660 -4 28 0 0 0 chr4 101646283 101646311 -100682036 + AT_rich Low_complexity Low_complexity 1 28 0 368 361 41 18 chr4 101646322 101646541 -100681806 - L2 LINE L2 -455 2859 2636 4582 151 59 79 chr4 101646541 101647983 -100680364 + pTR5 LTR ERV1 748 2296 -142 807 316 85 27 chr4 101647998 101648517 -100679830 - L2 LINE L2 -675 2639 2091 587 262 12 36 chr4 101648819 101648987 -100679360 + MIR SINE MIR 97 260 -2 3610 166 22 38 chr4 101649692 101650452 -100677895 - LTR5 LTR ERVK 0 969 222 388 124 0 112 chr4 101650715 101650804 -100677543 - L1PA12 LINE L1 0 6168 6090 2248 246 78 31 chr4 101650810 101651513 -100676834 - MER21B LTR ERV1 -108 755 20 406 261 0 11 chr4 101651539 101651627 -100676720 - MER21B LTR ERV1 -776 87 1 243 61 0 0 chr4 101652746 101652779 -100675568 + (TG)n Simple_repeat Simple_repeat 2 34 0 272 202 170 11 chr4 101653460 101653554 -100674793 - MLT1I LTR MaLR 0 409 301 309 291 157 15 chr4 101654601 101654735 -100673612 + MERVL LTR ERVL 4433 4585 -900 8580 119 28 3 chr4 101654874 101656129 -100672218 - HSMAR1 DNA Mariner 0 1287 2 988 312 105 27 chr4 101656142 101656658 -100671689 + MERVL LTR ERVL 4823 5378 -386 241 330 47 20 chr4 101657656 101657862 -100670485 - MIR SINE MIR -1 261 19 247 244 13 13 chr4 101658048 101658126 -100670221 + (TA)n Simple_repeat Simple_repeat 2 79 0 2328 50 20 7 chr4 101658494 101658792 -100669555 - AluY SINE Alu -9 302 1 35 41 0 0 chr4 101659340 101659389 -100668958 + AT_rich Low_complexity Low_complexity 1 49 0 4157 139 40 61 chr4 101659458 101660295 -100668052 + Tigger1 DNA MER2_type 134 927 -1491 1104 172 7 131 chr4 101660307 101660598 -100667749 + AluJb SINE Alu 13 267 -45 2672 66 22 0 chr4 101660598 101660961 -100667386 + L1PA13 LINE L1 5791 6161 -2 8578 124 51 32 chr4 101660962 101662438 -100665909 + Tigger1 DNA MER2_type 916 2418 0 21 36 0 0 chr4 101662489 101662517 -100665830 + AT_rich Low_complexity Low_complexity 1 28 0 260 218 48 102 chr4 101663028 101663066 -100665281 + LTR47B LTR ERVL 280 319 -124 2020 157 66 20 chr4 101663066 101663473 -100664874 + MSTB LTR MaLR 1 426 0 260 218 48 102 chr4 101663473 101663581 -100664766 + LTR47B LTR ERVL 319 418 -25 2196 93 3 35 chr4 101663692 101664003 -100664344 - AluSp SINE Alu -12 301 1 273 247 0 0 chr4 101664029 101664110 -100664237 + (TA)n Simple_repeat Simple_repeat 1 81 0 33 0 0 0 chr4 101664189 101664222 -100664125 + AT_rich Low_complexity Low_complexity 1 33 0 200 434 44 0 chr4 101664232 101664345 -100664002 + L2 LINE L2 3173 3290 -23 30 45 0 0 chr4 101664427 101664471 -100663876 + AT_rich Low_complexity Low_complexity 1 44 0 1874 192 0 11 chr4 101664727 101665096 -100663251 + MLT1A1 LTR MaLR 1 365 0 218 204 0 41 chr4 101665727 101665776 -100662571 - L2 LINE L2 -5 3308 3262 196 352 33 0 chr4 101666353 101666444 -100661903 + MIR SINE MIR 146 239 -23 2837 192 107 74 chr4 101666491 101667247 -100661100 + MER21B LTR ERV1 34 814 -49 625 214 35 50 chr4 101667342 101667543 -100660804 - LTR48 LTR ERV1 0 787 590 846 204 86 20 chr4 101667563 101667799 -100660548 - LTR48 LTR ERV1 -269 454 240 1191 90 0 0 chr4 101667814 101667970 -100660377 - AluSg/x SINE Alu -2 308 153 1009 216 86 13 chr4 101667973 101668205 -100660142 - LTR48 LTR ERV1 -538 249 1 334 348 79 49 chr4 101668208 101668475 -100659872 + L2 LINE L2 2997 3271 -1 387 288 167 19 chr4 101669249 101669464 -100658883 - MIR SINE MIR 0 262 16 1802 109 47 0 chr4 101670124 101670380 -100657967 - AluSg SINE Alu -9 301 34 2792 13 0 0 chr4 101670766 101671074 -100657273 - AluYb8 SINE Alu -10 308 1 21 82 0 0 chr4 101671130 101671179 -100657168 + AT_rich Low_complexity Low_complexity 1 49 0 653 315 47 21 chr4 101671379 101671614 -100656733 + MIR SINE MIR 1 241 -21 366 342 38 6 chr4 101671665 101671823 -100656524 - MIR SINE MIR -98 164 2 270 312 28 43 chr4 101671989 101672130 -100656217 - MIR SINE MIR -121 141 3 298 251 94 29 chr4 101672174 101672381 -100655966 - L1M4 LINE L1 -328 5793 5607 376 180 189 0 chr4 101672533 101672644 -100655703 - LTR16A1 LTR ERVL -2 455 324 321 314 41 37 chr4 101673021 101673322 -100655025 - ERVL LTR ERVL -178 5309 5048 1777 138 166 14 chr4 101673655 101673844 -100654503 - MSTA LTR MaLR 0 428 269 180 0 0 0 chr4 101673844 101673864 -100654483 + (GA)n Simple_repeat Simple_repeat 2 21 0 1777 138 166 14 chr4 101673864 101674023 -100654324 - MSTA LTR MaLR -159 269 27 1580 200 29 20 chr4 101674498 101674839 -100653508 - MER2 DNA MER2_type 0 345 1 23 33 0 0 chr4 101676684 101676714 -100651633 + AT_rich Low_complexity Low_complexity 1 30 0 5085 156 41 7 chr4 101677194 101678119 -100650228 - Tigger3b DNA MER2_type -1 1230 274 631 164 0 19 chr4 101678117 101678221 -100650126 - Tigger3b DNA MER2_type -1129 102 1 * 217 185 12 74 chr4 101678387 101678468 -100649879 + T-rich Low_complexity Low_complexity 3 78 0 186 43 0 0 chr4 101678500 101678523 -100649824 + (TAGG)n Simple_repeat Simple_repeat 1 23 0 21 36 0 0 chr4 101678591 101678619 -100649728 + AT_rich Low_complexity Low_complexity 1 28 0 2461 228 88 12 chr4 101679515 101680120 -100648227 + HERV16 LTR ERVL 1144 1794 -3891 2717 247 27 73 chr4 101680143 101680913 -100647434 + HERV16 LTR ERVL 2562 3296 -2389 1094 231 39 23 chr4 101681379 101681635 -100646712 + LTR53 LTR ERVL 260 519 0 258 255 71 0 chr4 101681650 101681748 -100646599 - Charlie2 DNA MER1_type -237 2625 2521 205 283 0 0 chr4 101684359 101684419 -100643928 + A-rich Low_complexity Low_complexity 1 60 0 295 156 0 0 chr4 101684749 101684814 -100643533 + AluSc SINE Alu 1 44 -255 1603 63 0 0 chr4 101684814 101685038 -100643309 + AluSc SINE Alu 90 313 0 27 0 0 0 chr4 101685077 101685104 -100643243 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr4 101685128 101685149 -100643198 + AT_rich Low_complexity Low_complexity 1 21 0 560 297 114 53 chr4 101686746 101686965 -100641382 + LTR16A1 LTR ERVL 1 205 -252 482 191 113 17 chr4 101686965 101687080 -100641267 + FLAM_A SINE Alu 1 126 -7 560 297 114 53 chr4 101687080 101687291 -100641056 + LTR16A1 LTR ERVL 205 457 0 299 313 160 31 chr4 101688092 101688380 -100639967 + HERV16 LTR ERVL 883 1207 -3789 2454 130 13 10 chr4 101688454 101688847 -100639500 - L1PA15 LINE L1 -4 6161 5768 436 333 17 22 chr4 101688904 101689084 -100639263 + HERV16 LTR ERVL 1942 2120 -2876 492 303 56 28 chr4 101689139 101689317 -100639030 + HERV16 LTR ERVL 2660 2842 -2154 628 324 50 30 chr4 101689408 101689772 -100638575 + HERV16 LTR ERVL 3050 3420 -2065 270 0 0 0 chr4 101689996 101690026 -100638321 + (CA)n Simple_repeat Simple_repeat 2 31 0 319 312 99 32 chr4 101690037 101690258 -100638089 - HAL1 LINE L1 -829 1678 1443 312 311 138 46 chr4 101690286 101690546 -100637801 - L1MEd LINE L1 -4878 1241 958 487 331 41 8 chr4 101690585 101690851 -100637496 - HAL1 LINE L1 -1422 1085 811 330 182 0 0 chr4 101692646 101692712 -100635635 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 1848 158 3 0 chr4 101694088 101694373 -100633974 + AluSx SINE Alu 3 288 -24 1563 211 46 46 chr4 101694435 101694824 -100633523 - MLT2C1 LTR ERVL -8 389 1 417 313 39 39 chr4 101696251 101696430 -100631917 + L2 LINE L2 3135 3313 0 1986 69 0 0 chr4 101696604 101696851 -100631496 + AluY SINE Alu 36 282 -29 22 0 0 0 chr4 101697506 101697528 -100630819 + AT_rich Low_complexity Low_complexity 1 22 0 700 296 89 32 chr4 101697789 101698053 -100630294 + L1MEc LINE L1 34 326 -6070 2147 104 3 7 chr4 101698053 101698378 -100629969 - AluSq SINE Alu 0 313 1 700 296 89 32 chr4 101698378 101698485 -100629862 + L1MEc LINE L1 326 426 -5970 375 285 35 52 chr4 101698485 101698558 -100629789 + L1MEc LINE L1 1103 1176 -5220 186 43 0 0 chr4 101698558 101698581 -100629766 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 375 285 35 52 chr4 101698581 101698679 -100629668 + L1MEc LINE L1 1176 1271 -5125 518 219 49 12 chr4 101698679 101698843 -100629504 + L1M4 LINE L1 5094 5263 -883 1320 242 43 3 chr4 101699210 101699497 -100628850 - MER89 LTR ERV1 -3 556 282 189 0 0 0 chr4 101699497 101699518 -100628829 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1320 242 43 3 chr4 101699518 101699630 -100628717 - MER89 LTR ERV1 -277 282 5 28584 41 1 2 chr4 101699850 101704186 -100624161 - L1PA4 LINE L1 0 6155 1827 1968 143 20 31 chr4 101704603 101704953 -100623394 + MER7A DNA MER2_type 1 344 -2 24 0 0 0 chr4 101706357 101706381 -100621966 + AT_rich Low_complexity Low_complexity 1 24 0 593 263 26 16 chr4 101706938 101707128 -100621219 + L1MB8 LINE L1 5945 6136 -42 228 200 0 0 chr4 101707806 101707856 -100620491 + (CA)n Simple_repeat Simple_repeat 2 51 0 221 209 44 11 chr4 101710589 101710680 -100617667 + (TTATA)n Simple_repeat Simple_repeat 2 95 0 319 278 70 17 chr4 101710865 101710980 -100617367 - MER91B DNA MER1_type -69 121 1 345 315 105 14 chr4 101711032 101711175 -100617172 + LTR33 LTR ERVL 43 198 -323 7259 43 5 1 chr4 101711317 101712345 -100616002 + L1PA5 LINE L1 5119 6149 -5 22 0 0 0 chr4 101712512 101712534 -100615813 + AT_rich Low_complexity Low_complexity 1 22 0 458 296 33 7 chr4 101712583 101712735 -100615612 - MER117 DNA MER1_type -6 191 36 230 0 33 0 chr4 101713150 101713180 -100615167 + (TC)n Simple_repeat Simple_repeat 2 32 0 234 143 0 0 chr4 101713180 101713229 -100615118 + (TA)n Simple_repeat Simple_repeat 1 49 0 1909 110 0 0 chr4 101714429 101714693 -100613654 - MER11B LTR ERVK 0 1236 973 599 103 0 0 chr4 101714797 101714884 -100613463 + AluSg/x SINE Alu 218 304 -5 307 210 0 0 chr4 101716019 101716100 -100612247 + C-rich Low_complexity Low_complexity 1 81 0 1095 302 73 31 chr4 101716427 101716672 -100611675 - MLT2F LTR ERVL 0 663 430 2616 137 26 0 chr4 101716672 101717087 -100611260 + MSTA LTR MaLR 1 426 -2 1095 302 73 31 chr4 101717087 101717448 -100610899 - MLT2F LTR ERVL -233 430 29 509 212 252 0 chr4 101717908 101718059 -100610288 + MER5A DNA MER1_type 1 189 0 214 321 45 22 chr4 101718145 101718279 -100610068 + L2 LINE L2 3170 3306 -7 2983 74 20 5 chr4 101719135 101719529 -100608818 - MLT2A1 LTR ERVL -44 400 1 292 282 0 13 chr4 101719989 101720067 -100608280 + MLT1J LTR MaLR 2 78 -433 240 225 0 42 chr4 101720147 101720218 -100608129 + MLT1L LTR MaLR 206 273 -342 1309 211 71 20 chr4 101770901 101771307 -100557040 + MER39 LTR ERV1 1 476 -231 704 194 8 0 chr4 101771312 101771446 -100556901 - FLAM_C SINE Alu -8 135 1 1016 178 74 13 chr4 101771447 101771678 -100556669 + MER39 LTR ERV1 463 707 0 210 118 0 0 chr4 101773463 101773497 -100554850 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 222 271 10 83 chr4 101774257 101774353 -100553994 - L2 LINE L2 0 3313 3225 2101 119 0 3 chr4 101774380 101774673 -100553674 + AluSg SINE Alu 1 292 -18 208 194 28 0 chr4 101774688 101774724 -100553623 - L2 LINE L2 -95 3218 3182 5045 149 37 27 chr4 101774853 101776003 -100552344 + L1PA16 LINE L1 4997 6157 -9 234 0 0 0 chr4 101776006 101776032 -100552315 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 207 335 33 92 chr4 101776558 101776710 -100551637 - MIR3 SINE MIR -30 178 36 237 178 0 0 chr4 101777148 101777193 -100551154 + (TG)n Simple_repeat Simple_repeat 2 46 0 5762 116 17 12 chr4 101779619 101780514 -100547833 - L1PA15 LINE L1 -4 6161 5263 1956 128 13 16 chr4 101780640 101780952 -100547395 + AluSq SINE Alu 1 311 -2 25 31 0 0 chr4 101781253 101781285 -100547062 + AT_rich Low_complexity Low_complexity 1 32 0 2134 122 0 6 chr4 101782072 101782383 -100545964 + AluSc SINE Alu 1 309 0 23 0 0 0 chr4 101783978 101784001 -100544346 + AT_rich Low_complexity Low_complexity 1 23 0 217 214 14 71 chr4 101784865 101784935 -100543412 + L2 LINE L2 3244 3309 -4 289 273 0 0 chr4 101785878 101785944 -100542403 - MLT1L LTR MaLR -123 492 427 2160 81 13 36 chr4 101785978 101786285 -100542062 + AluSc SINE Alu 1 300 -9 346 278 56 21 chr4 101786316 101786460 -100541887 - MLT1L LTR MaLR -435 180 32 759 224 98 5 chr4 101786516 101786730 -100541617 - ORSL DNA AcHobo 0 275 42 1635 320 42 16 chr4 101789295 101789979 -100538368 + L2 LINE L2 1816 2517 -797 723 350 40 6 chr4 101789979 101790332 -100538015 + L2 LINE L2 2673 3033 -280 2336 104 3 0 chr4 101790742 101791050 -100537297 + AluSp SINE Alu 3 311 -2 500 252 56 115 chr4 101791226 101791496 -100536851 + MIR SINE MIR 8 261 -1 315 0 0 0 chr4 101791770 101791805 -100536542 + (TG)n Simple_repeat Simple_repeat 2 36 0 2003 109 35 0 chr4 101792626 101792909 -100535438 - AluSp SINE Alu -17 296 4 192 40 0 0 chr4 101793450 101793475 -100534872 + (CA)n Simple_repeat Simple_repeat 2 26 0 241 304 32 0 chr4 101796454 101796579 -100531768 - L1ME3A LINE L1 -3 6167 6039 961 310 40 4 chr4 101796702 101797155 -100531192 - L1ME3A LINE L1 -132 6101 5624 301 351 7 34 chr4 101797181 101797329 -100531018 - L1ME3A LINE L1 -5042 1354 1211 344 215 0 184 chr4 101797355 101797513 -100530834 - MER57B LTR ERV1 -232 200 43 30 27 0 0 chr4 101797734 101797771 -100530576 + AT_rich Low_complexity Low_complexity 1 37 0 40 21 0 0 chr4 101798424 101798471 -100529876 + AT_rich Low_complexity Low_complexity 1 47 0 39 38 0 0 chr4 101799083 101799136 -100529211 + AT_rich Low_complexity Low_complexity 1 53 0 1557 290 68 22 chr4 101801924 101802641 -100525706 - L1ME2 LINE L1 -7 6157 5408 3093 278 93 27 chr4 101802642 101804664 -100523683 - L1ME2 LINE L1 -783 5363 3209 967 265 89 32 chr4 101804731 101805481 -100522866 - L1MB5 LINE L1 -13 6095 5390 857 231 28 19 chr4 101805481 101805697 -100522650 - MER20 DNA MER1_type -1 218 1 967 265 89 32 chr4 101805697 101805710 -100522637 - L1MB5 LINE L1 -718 5390 5379 1632 192 0 44 chr4 101805710 101806028 -100522319 - AluJo SINE Alu -8 304 1 967 265 89 32 chr4 101806028 101806077 -100522270 - L1MB5 LINE L1 -729 5379 718 275 158 0 53 chr4 101806140 101806197 -100522150 - L1ME3A LINE L1 -5469 736 683 242 149 0 21 chr4 101806751 101806798 -100521549 - L1ME3A LINE L1 -5934 271 226 363 298 28 3 chr4 101807313 101807469 -100520878 - L1M4 LINE L1 -1276 4870 4705 27 49 0 0 chr4 101807589 101807630 -100520717 + AT_rich Low_complexity Low_complexity 1 41 0 287 286 143 0 chr4 101807685 101807790 -100520557 - MIR SINE MIR -124 138 19 501 145 0 0 chr4 101807860 101807936 -100520411 + AluJ/FLAM SINE Alu 8 83 -229 22 0 0 0 chr4 101808691 101808713 -100519634 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 101809556 101809586 -100518761 + AT_rich Low_complexity Low_complexity 1 30 0 283 298 10 19 chr4 101810972 101811076 -100517271 + MER58 DNA MER1_type 2 104 -111 22 70 0 0 chr4 101811189 101811232 -100517115 + AT_rich Low_complexity Low_complexity 1 43 0 278 286 254 16 chr4 101812487 101812613 -100515734 + MER5A DNA MER1_type 28 183 -6 21 0 0 0 chr4 101812811 101812832 -100515515 + AT_rich Low_complexity Low_complexity 1 21 0 234 335 75 18 chr4 101813448 101813675 -100514672 - MARNA DNA Mariner -28 558 319 5533 95 3 6 chr4 101815109 101815886 -100512461 - L1PA11 LINE L1 0 6174 5401 * 8189 222 51 32 chr4 101815874 101818685 -100509662 - L1PA12 LINE L1 -3348 4236 7 274 214 0 18 chr4 101819066 101819122 -100509225 + Tigger5 DNA MER2_type 1 55 -2268 314 258 22 0 chr4 101819127 101819216 -100509131 + Tigger5 DNA MER2_type 2231 2321 -2 * 1426 135 28 0 chr4 101819216 101819429 -100508918 + MER30 DNA MER1_type 11 229 -1 1201 268 110 40 chr4 101819464 101820017 -100508330 - MLT1E LTR MaLR 0 593 2 218 289 0 0 chr4 101820018 101820070 -100508277 + L2 LINE L2 3262 3313 0 1976 136 42 31 chr4 101820129 101820489 -100507858 + THE1B LTR MaLR 1 364 0 1228 253 81 43 chr4 101821738 101822181 -100506166 + MLT1C LTR MaLR 6 465 -2 414 278 100 37 chr4 101822243 101822287 -100506060 + HsTC2 DNA Tc2 1290 1330 -568 2424 29 4 0 chr4 101822287 101822568 -100505779 - AluY SINE Alu -9 302 21 414 278 100 37 chr4 101822568 101822904 -100505443 + HsTC2 DNA Tc2 1330 1892 -6 997 233 51 95 chr4 101823256 101823632 -100504715 + MLT2B1 LTR ERVL 14 512 -42 1057 175 26 5 chr4 101823664 101823858 -100504489 - Tigger2 DNA MER2_type -254 2464 2267 430 167 0 0 chr4 101823842 101823908 -100504439 - Tigger2 DNA MER2_type -2649 69 4 * 291 200 0 53 chr4 101823914 101824009 -100504338 - L1MC4 LINE L1 -1337 6705 6616 1018 250 191 36 chr4 101824070 101824406 -100503941 + MLT1E LTR MaLR 206 593 0 454 289 127 28 chr4 101824979 101825373 -100502974 + L1ME4a LINE L1 5626 6058 -63 200 100 25 0 chr4 101825373 101825413 -100502934 + (TA)n Simple_repeat Simple_repeat 2 42 0 411 381 4 33 chr4 101826316 101826586 -100501761 + MIR SINE MIR 1 262 0 874 195 21 93 chr4 101826626 101826862 -100501485 + MER20 DNA MER1_type 1 219 0 321 26 0 0 chr4 101827752 101827790 -100500557 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 252 267 5 129 chr4 101827800 101828002 -100500345 + L2 LINE L2 3016 3192 -121 689 242 112 28 chr4 101828023 101828238 -100500109 + MIR SINE MIR 20 252 -10 201 295 126 11 chr4 101828256 101828351 -100499996 + L2 LINE L2 3206 3311 -2 1585 168 159 11 chr4 101828444 101828814 -100499533 + MSTA LTR MaLR 4 428 0 9492 133 14 41 chr4 101828814 101830420 -100497927 + MSTA-int LTR MaLR 18 1580 0 1880 164 128 13 chr4 101830420 101830804 -100497543 + MSTA LTR MaLR 1 428 0 24 32 0 0 chr4 101830883 101830914 -100497433 + AT_rich Low_complexity Low_complexity 1 31 0 2286 140 22 0 chr4 101831120 101831476 -100496871 - THE1B LTR MaLR 0 364 1 1768 196 3 0 chr4 101831684 101831995 -100496352 - AluSx SINE Alu 0 312 1 322 283 62 0 chr4 101832153 101832266 -100496081 - MIR SINE MIR -64 198 79 2627 298 100 31 chr4 101832417 101834577 -100493770 + L1MEc LINE L1 25 2035 -4180 1998 155 45 20 chr4 101834577 101834932 -100493415 - THE1B LTR MaLR 0 364 1 2627 298 100 31 chr4 101834932 101835704 -100492643 + L1MEc LINE L1 2035 2752 -3463 994 256 93 0 chr4 101835704 101836016 -100492331 - MER58B DNA MER1_type 0 341 1 2627 298 100 31 chr4 101836016 101836371 -100491976 + L1MEc LINE L1 2752 3506 -2709 649 264 103 32 chr4 101836452 101836763 -100491584 + L1MEc LINE L1 3945 4277 -1938 39 22 0 0 chr4 101836800 101836846 -100491501 + AT_rich Low_complexity Low_complexity 1 46 0 1111 225 105 47 chr4 101836850 101837317 -100491030 + L1MEc LINE L1 4477 4970 -1245 24 0 0 0 chr4 101837804 101837828 -100490519 + AT_rich Low_complexity Low_complexity 1 24 0 29 70 0 0 chr4 101838431 101838488 -100489859 + AT_rich Low_complexity Low_complexity 1 57 0 4013 122 92 73 chr4 101838591 101839951 -100488396 + pTR5 LTR ERV1 743 2605 -1 233 143 0 20 chr4 101840388 101840437 -100487910 + (TCCC)n Simple_repeat Simple_repeat 3 50 0 28 29 0 0 chr4 101841097 101841132 -100487215 + AT_rich Low_complexity Low_complexity 1 35 0 257 200 63 11 chr4 101841335 101841430 -100486917 + MER113 DNA MER1_type? 21 120 -401 9431 216 29 12 chr4 101842251 101844485 -100483862 + L1 LINE L1 3060 5256 -890 1854 153 57 23 chr4 101844485 101844837 -100483510 - THE1B LTR MaLR 0 364 1 11090 106 8 4 chr4 101844837 101846411 -100481936 - THE1B-int LTR MaLR 0 1580 1 2208 112 72 23 chr4 101846411 101846758 -100481589 - THE1B LTR MaLR 0 364 1 9431 216 29 12 chr4 101846758 101846827 -100481520 + L1 LINE L1 5255 5403 -743 355 281 90 52 chr4 101846840 101847299 -100481048 - L1MC4 LINE L1 -129 7913 7360 1637 271 83 17 chr4 101847310 101848211 -100480136 - L1M4 LINE L1 -2629 3517 2557 256 311 73 57 chr4 101850606 101850783 -100477564 + L2 LINE L2 3118 3297 -16 268 254 0 0 chr4 101851654 101851713 -100476634 - L2 LINE L2 -1 3312 3254 1789 209 115 40 chr4 101851963 101852441 -100475906 + MLT2B2 LTR ERVL 1 514 -1 200 195 49 0 chr4 101852728 101852769 -100475578 + CT-rich Low_complexity Low_complexity 1 43 0 13491 203 33 25 chr4 101854591 101855561 -100472786 - L1MA4A LINE L1 -6 7359 6398 2123 109 0 0 chr4 101855561 101855886 -100472461 - AluSq SINE Alu 0 325 1 183 42 0 0 chr4 101855890 101855914 -100472433 + (TTA)n Simple_repeat Simple_repeat 2 25 0 13491 203 33 25 chr4 101855914 101859215 -100469132 - L1MA4A LINE L1 -969 6396 3020 183 100 0 0 chr4 101859215 101859245 -100469102 + (CAA)n Simple_repeat Simple_repeat 3 32 0 13491 203 33 25 chr4 101859245 101862289 -100466058 - L1MA4A LINE L1 -4345 3020 1 486 251 105 36 chr4 101862649 101862868 -100465479 - L1MCc LINE L1 -6176 247 14 2136 125 3 0 chr4 101862893 101863189 -100465158 + AluSx SINE Alu 1 297 -15 230 343 27 0 chr4 101863411 101863484 -100464863 - MIR SINE MIR -96 166 92 225 94 0 0 chr4 101864323 101864355 -100463992 + (TG)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr4 101865021 101865042 -100463305 + AT_rich Low_complexity Low_complexity 1 21 0 219 234 0 0 chr4 101865042 101865089 -100463258 - MIR3 SINE MIR -5 203 157 5288 274 58 29 chr4 101866287 101867580 -100460767 - L1M4 LINE L1 -1018 5128 3874 203 0 37 0 chr4 101867580 101867607 -100460740 + (TTATA)n Simple_repeat Simple_repeat 2 29 0 5288 274 58 29 chr4 101867607 101868914 -100459433 - L1M4 LINE L1 -2272 3874 2452 488 326 19 12 chr4 101869659 101869978 -100458369 - L1MEc LINE L1 -3572 2643 2323 1034 243 36 15 chr4 101870031 101870368 -100457979 - L1MEc LINE L1 -4130 2266 1923 413 19 19 0 chr4 101870374 101870428 -100457919 + (CA)n Simple_repeat Simple_repeat 2 56 0 556 298 28 32 chr4 101870526 101870778 -100457569 - L1MEc LINE L1 -5701 695 445 41 58 0 0 chr4 101871276 101871345 -100457002 + AT_rich Low_complexity Low_complexity 1 69 0 623 326 121 10 chr4 101872091 101872404 -100455943 + LTR16A LTR ERVL 1 348 -102 321 68 0 0 chr4 101872885 101872929 -100455418 + (TG)n Simple_repeat Simple_repeat 1 44 0 3539 197 5 117 chr4 101873027 101873920 -100454427 + MER54B LTR ERVL 1 793 0 249 246 15 15 chr4 101874613 101874678 -100453669 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 1479 269 87 47 chr4 101875763 101876361 -100451986 + L1ME3A LINE L1 4747 5320 -850 1901 148 7 10 chr4 101876361 101876659 -100451688 + AluSx SINE Alu 1 297 -15 1479 269 87 47 chr4 101876659 101876778 -100451569 + L1ME3A LINE L1 5320 5433 -737 2011 173 24 3 chr4 101876778 101877159 -100451188 + MLT1B LTR MaLR 1 389 -1 1479 269 87 47 chr4 101877159 101877805 -100450542 + L1ME3A LINE L1 5433 6165 -5 314 289 128 60 chr4 101877877 101878095 -100450252 + L2 LINE L2 2704 2936 -378 314 286 29 71 chr4 101878186 101878326 -100450021 + L2 LINE L2 3180 3313 0 5497 152 27 18 chr4 101878667 101879883 -100448464 + L1MA4 LINE L1 5071 6300 0 1951 178 15 3 chr4 101880020 101880362 -100447985 - MER7A DNA MER2_type -2 344 1 237 272 140 9 chr4 101881132 101881246 -100447101 + L2 LINE L2 3139 3267 -5 261 98 0 0 chr4 101882231 101882272 -100446075 + (GA)n Simple_repeat Simple_repeat 1 41 0 197 176 0 0 chr4 101882274 101882308 -100446039 - L3 LINE CR1 -618 959 926 218 103 0 26 chr4 101882937 101882976 -100445371 + (TTTAA)n Simple_repeat Simple_repeat 4 41 0 266 123 0 110 chr4 101884294 101884367 -100443980 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 304 271 119 0 chr4 101884989 101885107 -100443240 + MIR SINE MIR 70 201 -61 958 302 140 30 chr4 101885109 101886027 -100442320 - L2 LINE L2 -5 3308 2282 403 265 70 76 chr4 101886391 101886576 -100441771 - MIR SINE MIR 0 262 79 21 36 0 0 chr4 101886671 101886699 -100441648 + AT_rich Low_complexity Low_complexity 1 28 0 248 178 40 30 chr4 101886789 101886890 -100441457 + (TTA)n Simple_repeat Simple_repeat 3 104 0 594 203 0 0 chr4 101887563 101887711 -100440636 + CT-rich Low_complexity Low_complexity 3 150 0 430 354 47 16 chr4 101888733 101888987 -100439360 - MIR SINE MIR 0 262 1 720 356 94 38 chr4 101889498 101890800 -100437547 - L2 LINE L2 -9 3304 1944 6223 94 7 1 chr4 101891533 101892391 -100435956 - L1PA8A LINE L1 -1 6130 5268 33 66 0 0 chr4 101892577 101892638 -100435709 + AT_rich Low_complexity Low_complexity 1 61 0 1931 163 24 6 chr4 101892955 101893286 -100435061 - MER1B DNA MER1_type 0 337 1 408 275 8 17 chr4 101894535 101894655 -100433692 + L2 LINE L2 3187 3305 -8 1506 148 109 0 chr4 101895058 101895314 -100433033 - AluSp SINE Alu -29 284 1 937 131 95 12 chr4 101895689 101895880 -100432467 - MER4E LTR ERV1 -7 759 399 399 301 56 7 chr4 101897491 101897634 -100430713 - MIR SINE MIR 0 262 113 1198 196 93 37 chr4 101897839 101898161 -100430186 - MLT2B1 LTR ERVL -180 340 1 288 392 36 11 chr4 101898162 101898406 -100429941 - L2 LINE L2 -219 3053 2801 262 268 134 0 chr4 101898916 101899013 -100429334 - L2 LINE L2 -832 2482 2373 576 322 177 14 chr4 101900019 101900438 -100427909 - L2 LINE L2 -16 3297 2811 5586 30 0 0 chr4 101901600 101902278 -100426069 - L1P LINE L1 -3112 3034 2357 * 12997 30 1 1 chr4 101902275 101904562 -100423785 + L1PA3 LINE L1 3846 6132 -23 6260 36 0 1 chr4 101904820 101905600 -100422747 + L1P LINE L1 3060 3838 -2308 1866 205 9 33 chr4 101905728 101905831 -100422516 + L1MD1 LINE L1 5459 5563 -796 1227 143 30 30 chr4 101905831 101906061 -100422286 - MER30 DNA MER1_type 0 230 1 1866 205 9 33 chr4 101906061 101906376 -100421971 + L1MD1 LINE L1 5563 5867 -492 216 0 0 0 chr4 101906424 101906448 -100421899 + (TG)n Simple_repeat Simple_repeat 2 25 0 1026 132 28 6 chr4 101906469 101906651 -100421696 + L1MD1 LINE L1 6041 6226 -16 186 246 0 0 chr4 101907100 101907161 -100421186 + CT-rich Low_complexity Low_complexity 4 64 0 954 313 58 3 chr4 101907189 101907502 -100420845 + MLT1J LTR MaLR 117 446 -65 1082 192 35 10 chr4 101907650 101907848 -100420499 + MLT1A1 LTR MaLR 163 365 0 1233 210 26 4 chr4 101907849 101908121 -100420226 + L1MB3 LINE L1 5516 5793 -390 351 192 0 0 chr4 101908121 101908194 -100420153 + (CA)n Simple_repeat Simple_repeat 1 73 0 2086 173 3 13 chr4 101908206 101908593 -100419754 + L1MB3 LINE L1 5794 6176 -7 1975 180 42 10 chr4 101908863 101909247 -100419100 + MSTD LTR MaLR 1 396 0 665 246 149 5 chr4 101910757 101910952 -100417395 - MIR SINE MIR -21 241 19 219 297 16 0 chr4 101911602 101911666 -100416681 + GA-rich Low_complexity Low_complexity 3 67 0 285 300 0 14 chr4 101911739 101911809 -100416538 - L2 LINE L2 -51 3221 3153 850 205 46 153 chr4 101912712 101913321 -100415026 - MER34B LTR ERV1 0 565 1 269 344 25 25 chr4 101913431 101913591 -100414756 + L2 LINE L2 3105 3264 -49 24 53 0 0 chr4 101913600 101913638 -100414709 + AT_rich Low_complexity Low_complexity 1 38 0 43 56 0 0 chr4 101913824 101913895 -100414452 + AT_rich Low_complexity Low_complexity 1 71 0 6193 96 8 19 chr4 101914734 101916273 -100412074 - L1PA12 LINE L1 -15 6153 4621 5503 158 11 6 chr4 101916273 101917218 -100411129 + L1PA12 LINE L1 3660 4608 -1538 200 214 0 0 chr4 101917544 101917586 -100410761 + T-rich Low_complexity Low_complexity 2 43 0 3965 195 17 19 chr4 101919620 101920549 -100407798 - L1 LINE L1 -1382 4764 3838 234 0 0 0 chr4 101920689 101920715 -100407632 + (T)n Simple_repeat Simple_repeat 1 26 0 23 33 0 0 chr4 101921209 101921239 -100407108 + AT_rich Low_complexity Low_complexity 1 30 0 717 194 0 0 chr4 101921382 101921506 -100406841 - FLAM_C SINE Alu -19 124 1 231 207 49 24 chr4 101921603 101921685 -100406662 - MLT1J LTR MaLR -52 459 376 2038 148 54 13 chr4 101921743 101922116 -100406231 - MLT1B LTR MaLR -2 388 1 2379 142 48 19 chr4 101922918 101923333 -100405014 - MSTC LTR MaLR 0 428 2 246 242 0 0 chr4 101923466 101923532 -100404815 + (TA)n Simple_repeat Simple_repeat 1 66 0 1654 146 95 45 chr4 101923833 101924169 -100404178 + MER34B LTR ERV1 1 353 -212 5399 153 6 7 chr4 101924487 101925211 -100403136 - L1PB1 LINE L1 -62 6089 5366 195 42 0 0 chr4 101925211 101925235 -100403112 + (TA)n Simple_repeat Simple_repeat 2 25 0 5399 153 6 7 chr4 101925235 101925836 -100402511 - L1PB1 LINE L1 -785 5366 4766 3293 234 11 4 chr4 101925834 101926679 -100401668 + L1 LINE L1 2971 3821 -2325 * 4611 227 21 11 chr4 101926946 101928681 -100399666 - L1PA13 LINE L1 -3664 3133 1364 797 298 26 59 chr4 101928730 101929069 -100399278 - L1PA13 LINE L1 -5914 873 546 455 196 0 22 chr4 101929325 101929442 -100398905 + FLAM_A SINE Alu 26 140 0 37 81 0 0 chr4 101929708 101929794 -100398553 + AT_rich Low_complexity Low_complexity 1 86 0 567 137 21 0 chr4 101930718 101930813 -100397534 - MER34C LTR ERV1 0 585 489 207 0 0 0 chr4 101931282 101931305 -100397042 + (TA)n Simple_repeat Simple_repeat 2 24 0 376 333 61 53 chr4 101931343 101931571 -100396776 + MIR SINE MIR 30 259 -3 2117 120 3 0 chr4 101932309 101932625 -100395722 - AluSg SINE Alu 0 317 1 1606 245 52 77 chr4 101933656 101934304 -100394043 - MER21B LTR ERV1 -134 729 98 390 284 11 0 chr4 101934343 101934438 -100393909 - MER21B LTR ERV1 -767 96 1 520 285 92 32 chr4 101934876 101935157 -100393190 - MLT1I LTR MaLR 0 409 112 939 286 76 63 chr4 101935802 101936263 -100392084 + LTR33 LTR ERVL 3 469 -52 349 320 95 28 chr4 101936297 101936550 -100391797 - MLT1I LTR MaLR -16 393 124 7311 83 6 3 chr4 101937576 101938565 -100389782 + HERVK9 LTR ERVK 1628 2619 -3297 * 19646 89 2 0 chr4 101938550 101941152 -100387195 + HERVK9 LTR ERVK 3029 5634 -282 2189 78 4 0 chr4 101941248 101941529 -100386818 + HERVK9 LTR ERVK 5635 5916 0 3126 113 55 6 chr4 101941529 101942016 -100386331 + MER9 LTR ERVK 1 511 0 196 250 177 89 chr4 101942018 101942107 -100386240 + L2 LINE L2 3179 3283 -30 1552 181 0 112 chr4 101942107 101942499 -100385848 + MER7A DNA MER2_type 1 346 0 196 250 177 89 chr4 101942499 101942533 -100385814 + L2 LINE L2 3283 3313 0 1000 239 24 31 chr4 101943344 101943599 -100384748 + L1MDa LINE L1 7 259 -6281 1927 201 64 9 chr4 101943703 101944127 -100384220 - LTR1B LTR ERV1 -379 447 1 276 219 0 2 chr4 101944209 101944270 -100384077 - MLT1J1 LTR MaLR -316 134 74 213 314 95 114 chr4 101944482 101944692 -100383655 - L2 LINE L2 -44 3228 3023 216 343 37 19 chr4 101944725 101944833 -100383514 + MIR SINE MIR 153 262 0 849 296 28 0 chr4 101944899 101945112 -100383235 - MIR SINE MIR -38 224 6 245 284 78 85 chr4 101946578 101946719 -100381628 + MIR SINE MIR 57 196 -66 29 47 0 0 chr4 101946854 101946897 -100381450 + AT_rich Low_complexity Low_complexity 1 43 0 307 351 149 11 chr4 101947203 101947553 -100380794 + L2 LINE L2 2580 2977 -337 477 286 75 19 chr4 101948273 101948486 -100379861 + MER57-int LTR ERV1 6913 7137 -400 907 297 125 15 chr4 101948493 101948884 -100379463 + MER57B LTR ERV1 1 434 0 1922 138 10 119 chr4 101949096 101949527 -100378820 + MLT1B LTR MaLR 7 374 0 218 222 0 16 chr4 101952419 101952482 -100375865 + T-rich Low_complexity Low_complexity 2 63 0 240 323 0 0 chr4 101952943 101953005 -100375342 - L2 LINE L2 -8 3264 3203 1242 277 44 78 chr4 101953392 101953657 -100374690 + MLT1E LTR MaLR 47 319 -274 234 0 0 0 chr4 101953657 101953683 -100374664 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1242 277 44 78 chr4 101953683 101953983 -100374364 + MLT1E LTR MaLR 319 593 0 231 400 27 13 chr4 101954074 101954224 -100374123 + MER5A DNA MER1_type 20 171 -18 27 81 0 0 chr4 101954211 101954273 -100374074 + AT_rich Low_complexity Low_complexity 1 62 0 * 2592 36 3 0 chr4 101954398 101954699 -100373648 - AluY SINE Alu -9 302 1 21 36 0 0 chr4 101954832 101954860 -100373487 + AT_rich Low_complexity Low_complexity 1 28 0 214 301 0 27 chr4 101955252 101955325 -100373022 + L2 LINE L2 3187 3257 -15 23 86 0 0 chr4 101956840 101956898 -100371449 + AT_rich Low_complexity Low_complexity 1 58 0 2690 190 17 30 chr4 101957141 101957731 -100370616 + L1PA15-16 LINE L1 2284 2865 -3984 682 163 15 15 chr4 101957733 101957868 -100370479 + L1P4 LINE L1 5662 5796 -369 2134 153 46 18 chr4 101957972 101958365 -100369982 + L1PA15 LINE L1 5757 6160 -5 23 0 0 0 chr4 101959833 101959856 -100368491 + AT_rich Low_complexity Low_complexity 1 23 0 2487 60 0 0 chr4 101960150 101960450 -100367897 - AluY SINE Alu -11 300 1 781 267 88 29 chr4 101960558 101960798 -100367549 - MIR SINE MIR -3 259 6 400 311 44 39 chr4 101962315 101962495 -100365852 + L1MEd LINE L1 916 1096 -5023 1483 44 6 0 chr4 101962516 101962699 -100365648 + AluY SINE Alu 128 311 0 271 322 124 45 chr4 101962708 101962885 -100365462 - LTR16C LTR ERVL 0 491 301 1578 174 147 25 chr4 101963458 101963826 -100364521 + MSTA LTR MaLR 16 428 0 2722 239 98 41 chr4 101963871 101964940 -100363407 + L1MDa LINE L1 291 1298 -5242 1950 133 7 13 chr4 101964940 101965248 -100363099 + AluSx SINE Alu 1 306 -6 2722 239 98 41 chr4 101965248 101965428 -100362919 + L1MDa LINE L1 1298 1466 -5074 1469 136 4 4 chr4 101965428 101965671 -100362676 + L1MA3 LINE L1 6053 6295 -10 2722 239 98 41 chr4 101965671 101965930 -100362417 + L1MDa LINE L1 1466 2267 -4273 976 222 42 0 chr4 101966044 101966305 -100362042 - L1MA4 LINE L1 -11 6289 6018 418 268 84 0 chr4 101966288 101966430 -100361917 + L1MD2 LINE L1 6196 6349 -10 * 191 366 9 45 chr4 101966913 101967026 -100361321 - MIR SINE MIR -72 136 44 311 300 74 32 chr4 101967026 101967216 -100361131 - LTR33A LTR ERVL -2 521 324 1831 121 0 68 chr4 101967789 101968096 -100360251 + AluSx SINE Alu 1 286 -26 208 234 31 16 chr4 101969051 101969115 -100359232 + (AATAG)n Simple_repeat Simple_repeat 1 65 0 201 143 0 0 chr4 101969151 101969186 -100359161 + (TCTCTG)n Simple_repeat Simple_repeat 6 40 0 1598 255 108 52 chr4 101969749 101970305 -100358042 + MLT1E LTR MaLR 7 593 0 574 191 9 0 chr4 101970375 101970480 -100357867 + MER20 DNA MER1_type 111 216 -3 22 0 0 0 chr4 101972856 101972878 -100355469 + AT_rich Low_complexity Low_complexity 1 22 0 460 360 11 11 chr4 101973194 101973383 -100354964 + MER5A DNA MER1_type 1 189 0 317 236 138 63 chr4 101973926 101974100 -100354247 + L1ME4a LINE L1 5720 5906 -215 678 293 5 16 chr4 101975249 101975440 -100352907 + L1PA16 LINE L1 2 190 -6597 * 8279 201 50 16 chr4 101975433 101978560 -100349787 + L1PA16 LINE L1 3582 6816 -1 24 32 0 0 chr4 101978575 101978606 -100349741 + AT_rich Low_complexity Low_complexity 1 31 0 921 191 101 6 chr4 101978728 101978832 -100349515 + AluJo SINE Alu 18 111 -201 222 91 0 0 chr4 101978832 101978865 -100349482 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 921 191 101 6 chr4 101978865 101978938 -100349409 + AluJo SINE Alu 111 212 -100 1717 189 84 25 chr4 101979085 101979562 -100348785 + MLT1D LTR MaLR 1 505 0 215 53 0 53 chr4 101979583 101979621 -100348726 + (TAGA)n Simple_repeat Simple_repeat 1 36 0 284 244 41 32 chr4 101979721 101979844 -100348503 + L1ME LINE L1 5739 5862 -302 360 43 0 0 chr4 101980229 101980275 -100348072 + (TA)n Simple_repeat Simple_repeat 2 47 0 228 256 182 0 chr4 101981013 101981134 -100347213 - Charlie2a DNA MER1_type -3 2859 2717 452 244 128 0 chr4 101981146 101981318 -100347029 - Charlie2a DNA MER1_type -1203 1659 1466 228 189 75 0 chr4 101981452 101981505 -100346842 - Charlie2a DNA MER1_type -2259 603 547 446 377 84 34 chr4 101981532 101981948 -100346399 - L2 LINE L2 -611 2703 2267 389 312 24 48 chr4 101982167 101982417 -100345930 - L1ME3A LINE L1 -4 6166 5923 238 176 59 44 chr4 101982839 101982907 -100345440 + MER34 LTR ERV1 462 530 -12 269 194 56 56 chr4 101982979 101983087 -100345260 - L1ME3A LINE L1 -2155 5840 5733 206 318 150 48 chr4 101983120 101983453 -100344894 - L2 LINE L2 -18 3295 2929 575 177 0 26 chr4 101983475 101983490 -100344857 - FLAM_C SINE Alu -169 143 129 2170 122 3 0 chr4 101983490 101983801 -100344546 - AluSx SINE Alu 0 312 1 575 177 0 26 chr4 101983801 101983898 -100344449 - FLAM_C SINE Alu -183 129 34 300 290 40 40 chr4 101984929 101985053 -100343294 - L1ME2 LINE L1 -298 5866 5743 1729 157 116 15 chr4 101985207 101985596 -100342751 + MSTA LTR MaLR 1 428 0 1219 271 85 13 chr4 101985648 101986424 -100341923 - MER69B DNA AcHobo -46 1180 335 360 189 14 0 chr4 101986430 101986504 -100341843 - MER69 DNA AcHobo -253 2273 2199 397 294 8 25 chr4 101986523 101986642 -100341705 - MER69 DNA AcHobo -914 312 196 2280 88 0 13 chr4 101987820 101988128 -100340219 + AluY SINE Alu 1 304 -7 180 111 0 0 chr4 101988805 101988832 -100339515 + (TG)n Simple_repeat Simple_repeat 2 28 0 1017 353 117 37 chr4 101989615 101990689 -100337658 + L2 LINE L2 1796 2955 -359 760 302 12 21 chr4 101991863 101992105 -100336242 - MIR SINE MIR -10 252 13 217 126 63 21 chr4 101992322 101992417 -100335930 + (TA)n Simple_repeat Simple_repeat 2 100 0 211 339 0 0 chr4 101993302 101993364 -100334983 - MER91 DNA MER1_type -78 62 1 1689 184 0 20 chr4 101994844 101995143 -100333204 - AluJo SINE Alu -19 293 1 455 329 43 29 chr4 101995618 101995825 -100332522 - MIR SINE MIR -31 231 22 2049 135 6 10 chr4 101997251 101997562 -100330785 + AluSg SINE Alu 1 310 0 32 67 0 0 chr4 101997694 101997754 -100330593 + AT_rich Low_complexity Low_complexity 1 60 0 236 283 0 0 chr4 101998572 101998632 -100329715 + MIR SINE MIR 203 262 0 305 156 0 0 chr4 102000530 102000575 -100327772 - Alu SINE Alu -255 45 1 989 265 28 44 chr4 102001644 102002006 -100326341 + L1MD3 LINE L1 7627 7982 -13 22 70 0 0 chr4 102002905 102002948 -100325399 + AT_rich Low_complexity Low_complexity 1 43 0 1109 211 118 48 chr4 102003911 102003969 -100324378 + MLT1A1 LTR MaLR 11 64 -301 1658 163 72 0 chr4 102003969 102004245 -100324102 + AluSx SINE Alu 1 296 -16 1109 211 118 48 chr4 102004245 102004518 -100323829 + MLT1A1 LTR MaLR 64 365 0 187 298 58 19 chr4 102004579 102004683 -100323664 + MIR SINE MIR 63 170 -92 234 222 0 0 chr4 102004914 102004968 -100323379 + (TA)n Simple_repeat Simple_repeat 1 54 0 348 273 149 70 chr4 102005173 102005415 -100322932 + MIR SINE MIR 2 262 0 354 237 133 11 chr4 102005497 102005597 -100322750 + MIR SINE MIR 42 151 -66 398 239 182 44 chr4 102006897 102007056 -100321291 - MER5A DNA MER1_type 0 189 9 221 339 65 0 chr4 102007404 102007466 -100320881 - MIR SINE MIR -170 92 27 186 43 0 0 chr4 102007634 102007657 -100320690 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1000 209 18 22 chr4 102007668 102007893 -100320454 - AluJo SINE Alu -84 228 5 243 0 0 0 chr4 102008307 102008334 -100320013 + (T)n Simple_repeat Simple_repeat 1 27 0 212 337 34 0 chr4 102009326 102009415 -100318932 - MIR SINE MIR -70 192 101 618 300 54 17 chr4 102009431 102009671 -100318676 - MIR SINE MIR -10 252 4 346 373 19 25 chr4 102009881 102010039 -100318308 - L3 LINE CR1 -11 1566 1410 322 339 107 8 chr4 102010398 102010519 -100317828 - L2 LINE L2 -1 3271 3139 26 30 0 0 chr4 102011994 102012027 -100316320 + AT_rich Low_complexity Low_complexity 1 33 0 245 296 194 0 chr4 102013242 102013340 -100315007 + L2 LINE L2 3136 3252 -20 549 284 71 10 chr4 102014046 102014243 -100314104 - L2 LINE L2 -1 3312 3104 217 222 0 0 chr4 102014546 102014591 -100313756 - MIR SINE MIR -64 198 154 28 48 0 0 chr4 102014962 102015004 -100313343 + AT_rich Low_complexity Low_complexity 1 42 0 23 86 0 0 chr4 102015220 102015278 -100313069 + AT_rich Low_complexity Low_complexity 1 58 0 1967 132 0 0 chr4 102018149 102018436 -100309911 + AluSx SINE Alu 5 291 -21 401 307 90 29 chr4 102018589 102018888 -100309459 + L1ME LINE L1 5355 5669 -493 21 0 0 0 chr4 102020897 102020918 -100307429 + AT_rich Low_complexity Low_complexity 1 21 0 1140 15 15 0 chr4 102022488 102022625 -100305722 + L1PA2 LINE L1 6017 6155 0 1906 174 82 20 chr4 102022825 102023215 -100305132 + MLT2C2 LTR ERVL 1 414 -50 329 131 16 0 chr4 102023215 102023276 -100305071 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 256 206 0 32 chr4 102023277 102023340 -100305007 + MLT2C2 LTR ERVL 460 520 0 21 0 0 0 chr4 102024217 102024238 -100304109 + AT_rich Low_complexity Low_complexity 1 21 0 1827 152 61 28 chr4 102025384 102025747 -100302600 - THE1C LTR MaLR 0 375 1 283 297 101 43 chr4 102026666 102026804 -100301543 + L2 LINE L2 3167 3312 -1 400 348 109 50 chr4 102027367 102027997 -100300350 - L2 LINE L2 -40 3232 2566 406 288 129 37 chr4 102028416 102028579 -100299768 + L2 LINE L2 347 524 -2790 1490 204 12 47 chr4 102028586 102028929 -100299418 + MLT1A1 LTR MaLR 4 334 -31 30347 114 8 24 chr4 102028986 102035464 -100292883 + L1PA7 LINE L1 8 6468 -1 194 0 39 0 chr4 102035614 102035640 -100292707 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 23539 28 2 0 chr4 102035640 102039238 -100289109 - L1PA2 LINE L1 -10 6145 2543 3005 38 0 0 chr4 102039241 102039608 -100288739 - L1PA2 LINE L1 -3867 2279 1913 269 206 0 0 chr4 102041148 102041211 -100287136 + (TA)n Simple_repeat Simple_repeat 1 63 0 2743 218 15 6 chr4 102041213 102041749 -100286598 + MER21B LTR ERV1 12 552 -311 1467 183 137 3 chr4 102041805 102042111 -100286236 - MER7A DNA MER2_type 0 346 2 261 246 0 0 chr4 102042337 102042398 -100285949 + (TGAA)n Simple_repeat Simple_repeat 4 64 0 2574 170 16 45 chr4 102042739 102043117 -100285230 - LOR1a LTR ERV1 0 497 136 2261 165 31 9 chr4 102043117 102043536 -100284811 - MSTA LTR MaLR 0 428 1 2574 170 16 45 chr4 102043536 102043668 -100284679 - LOR1a LTR ERV1 -361 136 2 26 82 0 0 chr4 102044719 102044780 -100283567 + AT_rich Low_complexity Low_complexity 1 61 0 407 279 12 17 chr4 102045000 102045209 -100283138 + (TA)n Simple_repeat Simple_repeat 1 207 0 1846 201 44 78 chr4 102046492 102047060 -100281287 - MER34B LTR ERV1 -6 559 11 315 0 0 0 chr4 102047663 102047698 -100280649 + (TG)n Simple_repeat Simple_repeat 2 36 0 348 24 0 0 chr4 102047706 102047747 -100280600 + (GA)n Simple_repeat Simple_repeat 2 42 0 329 227 40 0 chr4 102048829 102048904 -100279443 - MER63 DNA MER1_type -6 1055 978 305 250 0 0 chr4 102048906 102048974 -100279373 - MER63 DNA MER1_type -312 750 683 219 125 78 0 chr4 102049175 102049239 -100279108 + (TA)n Simple_repeat Simple_repeat 1 69 0 992 249 32 79 chr4 102049380 102049758 -100278589 + MLT1A1 LTR MaLR 4 363 -2 363 238 84 114 chr4 102050166 102050368 -100277979 - MIR SINE MIR -58 204 9 21 57 0 0 chr4 102050467 102050502 -100277845 + AT_rich Low_complexity Low_complexity 1 35 0 27 49 0 0 chr4 102051241 102051282 -100277065 + AT_rich Low_complexity Low_complexity 1 41 0 268 264 11 23 chr4 102052010 102052097 -100276250 - MLT1J2 LTR MaLR -283 167 82 364 341 61 34 chr4 102052914 102053178 -100275169 + MLT1K LTR MaLR 160 430 -158 210 150 0 0 chr4 102053186 102053226 -100275121 + (GA)n Simple_repeat Simple_repeat 1 40 0 774 244 81 79 chr4 102053485 102053878 -100274469 - MSTD LTR MaLR -2 394 1 215 333 99 21 chr4 102053935 102054076 -100274271 - MIR SINE MIR -60 202 51 574 286 88 78 chr4 102054209 102054695 -100273652 - LTR16C LTR ERVL 0 491 1 28 48 0 0 chr4 102055783 102055825 -100272522 + AT_rich Low_complexity Low_complexity 1 42 0 1148 248 20 50 chr4 102055840 102056092 -100272255 - L1ME1 LINE L1 -4 6162 5925 491 118 26 0 chr4 102056092 102056168 -100272179 - MADE1 DNA Mariner -1 79 2 1148 248 20 50 chr4 102056168 102056311 -100272036 - L1ME1 LINE L1 -241 5925 5779 437 279 53 48 chr4 102056313 102056521 -100271826 + MER63A DNA MER1_type 1 209 -1 716 240 95 1 chr4 102056529 102056734 -100271613 - L1M3 LINE L1 -400 5768 5545 190 278 155 21 chr4 102056913 102057010 -100271337 - L2 LINE L2 -635 2679 2570 207 293 180 54 chr4 102057221 102057388 -100270959 + MIR SINE MIR 13 200 -62 186 138 0 0 chr4 102057403 102057432 -100270915 + L2 LINE L2 3191 3219 -94 1369 137 0 47 chr4 102058028 102058261 -100270086 - AluSg/x SINE Alu -4 308 87 1180 215 0 95 chr4 102059114 102059430 -100268917 - AluJo SINE Alu -16 286 1 23 0 0 0 chr4 102062054 102062077 -100266270 + AT_rich Low_complexity Low_complexity 1 23 0 288 91 13 52 chr4 102062423 102062500 -100265847 + (TTTAA)n Simple_repeat Simple_repeat 1 74 0 1580 268 95 40 chr4 102062559 102063010 -100265337 + L1MEc LINE L1 23 448 -5948 906 250 5 14 chr4 102063010 102063230 -100265117 + MER20 DNA MER1_type 2 219 0 1580 268 95 40 chr4 102063230 102063402 -100264945 + L1MEc LINE L1 448 609 -5787 297 0 0 0 chr4 102063402 102063435 -100264912 + (CA)n Simple_repeat Simple_repeat 2 34 0 1580 268 95 40 chr4 102063435 102063569 -100264778 + L1MEc LINE L1 609 823 -5573 * 4863 220 35 24 chr4 102063566 102065779 -100262568 + L1MC1 LINE L1 4134 6333 0 1632 215 18 37 chr4 102065775 102065839 -100262508 + L1MEc LINE L1 810 874 -5341 * 799 84 19 0 chr4 102065839 102065946 -100262401 + L1PA7 LINE L1 6046 6154 0 1632 215 18 37 chr4 102065946 102066594 -100261753 + L1MEc LINE L1 874 4805 -1410 915 296 52 15 chr4 102066583 102066985 -100261362 - L1M4 LINE L1 -1775 4371 3955 * 1383 218 7 0 chr4 102066980 102067287 -100261060 + L1PA16 LINE L1 4735 5043 -1103 * 5122 34 3 0 chr4 102067284 102067899 -100260448 - L1PA5 LINE L1 -1694 4452 3836 * 7374 44 0 0 chr4 102067898 102069215 -100259132 + L1PA5 LINE L1 4467 5783 -371 3033 52 3 0 chr4 102069647 102070030 -100258317 + L1PA5 LINE L1 5770 6153 -1 4928 159 21 3 chr4 102070055 102071164 -100257183 + L1PA16 LINE L1 5031 6158 -8 2716 217 64 71 chr4 102071175 102072411 -100255936 + L1ME1 LINE L1 4352 5577 -589 1278 124 114 130 chr4 102072411 102072710 -100255637 + AluSx SINE Alu 2 295 -7 2716 217 64 71 chr4 102072710 102073291 -100255056 + L1ME1 LINE L1 5577 6161 -5 324 0 0 0 chr4 102074134 102074170 -100254177 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 25 0 0 0 chr4 102074219 102074244 -100254103 + AT_rich Low_complexity Low_complexity 1 25 0 1015 276 129 31 chr4 102075000 102075456 -100252891 - MLT1D LTR MaLR 0 505 5 238 276 0 0 chr4 102075479 102075537 -100252810 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 1303 196 14 68 chr4 102075586 102075701 -100252646 + Tigger7 DNA MER2_type 1 121 -2366 2492 67 0 6 chr4 102075701 102076014 -100252333 - AluY SINE Alu 0 311 1 1303 196 14 68 chr4 102076014 102076178 -100252169 + Tigger7 DNA MER2_type 121 265 -2222 399 202 155 0 chr4 102076180 102076264 -100252083 + Tigger7 DNA MER2_type 2391 2487 0 3105 233 38 1 chr4 102076264 102077021 -100251326 + MER63C DNA MER1_type 138 922 -8 313 262 107 5 chr4 102077360 102077498 -100250849 + MIR SINE MIR 48 196 -58 381 176 0 0 chr4 102078642 102078716 -100249631 + GA-rich Low_complexity Low_complexity 2 75 0 2354 87 3 3 chr4 102078719 102079030 -100249317 + AluY SINE Alu 1 311 0 1106 151 0 12 chr4 102079030 102079202 -100249145 + AluSc SINE Alu 131 300 -9 1564 210 62 58 chr4 102080559 102081060 -100247287 - MLT1D LTR MaLR -1 504 2 21 0 0 0 chr4 102081603 102081624 -100246723 + AT_rich Low_complexity Low_complexity 1 21 0 2688 134 18 30 chr4 102082215 102082706 -100245641 + L1MA4A LINE L1 5812 6296 -7 22 0 0 0 chr4 102082757 102082779 -100245568 + AT_rich Low_complexity Low_complexity 1 22 0 4243 186 34 79 chr4 102082865 102082984 -100245363 + L1MC2 LINE L1 4918 5041 -1303 3091 155 37 4 chr4 102082984 102083494 -100244853 - MER1A DNA MER1_type 0 527 1 4243 186 34 79 chr4 102083494 102084860 -100243487 + L1MC2 LINE L1 5041 6337 -7 207 100 0 0 chr4 102085542 102085572 -100242775 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 425 323 83 30 chr4 102085587 102085853 -100242494 - L2 LINE L2 -26 3287 3008 342 246 171 83 chr4 102085860 102086088 -100242259 - L2 LINE L2 -4 3309 3062 1916 116 53 61 chr4 102086105 102086483 -100241864 - THE1C LTR MaLR 0 375 1 272 345 7 0 chr4 102086511 102086650 -100241697 - L1MC/D LINE L1 -2266 5778 5639 431 297 77 35 chr4 102086882 102087137 -100241210 - L1MC/D LINE L1 -938 1805 1391 23 33 0 0 chr4 102087407 102087437 -100240910 + AT_rich Low_complexity Low_complexity 1 30 0 5123 150 30 4 chr4 102087437 102087576 -100240771 - L1PA15 LINE L1 -2 6163 6029 213 39 0 0 chr4 102087576 102087602 -100240745 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1970 155 0 3 chr4 102087605 102087895 -100240452 - AluSx SINE Alu -23 289 1 5123 150 30 4 chr4 102087895 102088795 -100239552 - L1PA15 LINE L1 -137 6028 5128 192 77 0 0 chr4 102088808 102088834 -100239513 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 404 315 39 22 chr4 102089470 102089651 -100238696 + MIR SINE MIR 9 192 -70 392 339 103 25 chr4 102091140 102091382 -100236965 + MIR SINE MIR 1 261 -1 41957 76 16 1 chr4 102091551 102096985 -100231362 + HERVL-A1 LTR ERVL 139 5654 0 3611 52 5 0 chr4 102096985 102097425 -100230922 + MLT2A1 LTR ERVL 1 442 -2 686 205 0 0 chr4 102098254 102098376 -100229971 + FLAM_A SINE Alu 4 125 -8 287 193 36 12 chr4 102099969 102100052 -100228295 + MER53 DNA DNA 105 189 0 310 204 89 10 chr4 102100311 102100392 -100227955 + AluSp SINE Alu 100 170 -133 1714 91 30 0 chr4 102100395 102100627 -100227720 + AluSp SINE Alu 71 309 -4 28 0 0 0 chr4 102102150 102102178 -100226169 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 102103102 102103124 -100225223 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr4 102103184 102103205 -100225142 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 662 241 22 0 chr4 102103361 102103498 -100224849 + MER91A DNA MER1_type 40 179 -17 276 304 89 0 chr4 102103494 102103573 -100224774 + MER91A DNA MER1_type 90 175 -21 * 591 278 167 31 chr4 102103581 102103970 -100224377 + MLT1K LTR MaLR 147 588 0 223 336 55 31 chr4 102104162 102104290 -100224057 - L2 LINE L2 -217 3055 2925 189 0 0 0 chr4 102104415 102104436 -100223911 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 366 61 0 0 chr4 102104435 102104484 -100223863 + (TG)n Simple_repeat Simple_repeat 2 50 0 305 340 98 21 chr4 102104540 102104775 -100223572 - MLT1K LTR MaLR -335 253 1 367 326 15 15 chr4 102104979 102105111 -100223236 + MER94 DNA DNA 2 133 -1 481 259 83 64 chr4 102105441 102105858 -100222489 - MLT1J2 LTR MaLR -24 487 1 584 346 107 25 chr4 102106146 102106715 -100221632 + L2 LINE L2 2191 2806 -508 449 288 112 83 chr4 102106717 102107162 -100221185 - LTR33A LTR ERVL -4 519 62 250 315 43 94 chr4 102107216 102107492 -100220855 + L2 LINE L2 2816 3077 -195 25 0 0 0 chr4 102108325 102108350 -100219997 + AT_rich Low_complexity Low_complexity 1 25 0 196 214 107 0 chr4 102109618 102109674 -100218673 + MIR SINE MIR 139 200 -62 1306 193 17 38 chr4 102109683 102110069 -100218278 + MLT1C LTR MaLR 1 467 0 518 349 93 37 chr4 102110970 102111455 -100216892 + L1MA6 LINE L1 1217 1728 -5768 1453 282 58 23 chr4 102111798 102112652 -100215695 + L1MA6 LINE L1 2089 2974 -4522 * 4940 175 15 20 chr4 102112647 102113926 -100214421 + L1PB4 LINE L1 4863 6143 -13 293 243 45 27 chr4 102113847 102113958 -100214389 + L1MA4A LINE L1 6190 6302 -1 * 13163 190 33 31 chr4 102113938 102118808 -100209539 + L1MA6 LINE L1 2873 7716 -3 801 200 20 80 chr4 102120269 102120424 -100207923 + MER5A DNA MER1_type 1 143 -46 600 183 78 39 chr4 102120424 102120604 -100207743 + MER53 DNA DNA 1 187 -2 801 200 20 80 chr4 102120604 102120648 -100207699 + MER5A DNA MER1_type 143 188 -1 21 0 0 0 chr4 102120814 102120835 -100207512 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr4 102121248 102121291 -100207056 + AT_rich Low_complexity Low_complexity 1 43 0 435 98 81 2 chr4 102123454 102123533 -100204814 + LTR49 LTR ERV1 15 90 -505 605 202 61 80 chr4 102123554 102123767 -100204580 + LTR49 LTR ERV1 366 574 -21 2621 113 3 0 chr4 102123887 102124250 -100204097 + THE1B LTR MaLR 1 364 0 447 193 30 173 chr4 102124496 102124801 -100203546 + L1ME3A LINE L1 5693 5955 -215 232 249 77 83 chr4 102124874 102125043 -100203304 + L1ME3A LINE L1 5967 6134 -36 560 238 112 0 chr4 102126863 102127069 -100201278 - L1M4b LINE L1 -3782 3175 2947 288 282 68 0 chr4 102127189 102127229 -100201118 - L1MA10 LINE L1 -8 6326 6287 1851 260 65 47 chr4 102127229 102128691 -100199656 - L1ME1 LINE L1 -46 6514 5005 1305 273 54 22 chr4 102128693 102129361 -100198986 - L1ME1 LINE L1 -4225 2496 1771 356 240 64 119 chr4 102129389 102129735 -100198612 - L1M4b LINE L1 -4158 2980 2671 321 26 0 0 chr4 102129735 102129773 -100198574 + (CA)n Simple_repeat Simple_repeat 1 38 0 356 240 64 119 chr4 102129773 102129956 -100198391 - L1M4b LINE L1 -4467 2671 2480 27 0 0 0 chr4 102130057 102130084 -100198263 + AT_rich Low_complexity Low_complexity 1 27 0 2250 80 0 26 chr4 102130118 102130431 -100197916 - AluY SINE Alu -6 305 1 3075 230 60 55 chr4 102130437 102131305 -100197042 - L1M4b LINE L1 -4544 2415 1532 947 55 79 0 chr4 102131305 102131432 -100196915 - MER85 DNA T2_type 0 139 3 3075 230 60 55 chr4 102131432 102132232 -100196115 - L1M4b LINE L1 -5427 1532 738 7025 55 0 0 chr4 102132233 102133434 -100194913 - L1PA6 LINE L1 -2 6152 4949 10009 55 5 19 chr4 102133434 102134767 -100193580 + L1PA6 LINE L1 3639 4952 -1194 1799 282 124 40 chr4 102134760 102135456 -100192891 - L1M4b LINE L1 -6103 756 3 * 217 266 128 32 chr4 102135690 102135784 -100192563 + MIR SINE MIR 49 151 -111 22 0 0 0 chr4 102136310 102136332 -100192015 + AT_rich Low_complexity Low_complexity 1 22 0 1754 172 48 28 chr4 102136895 102137249 -100191098 + MLT2D LTR ERVL 1 361 -53 305 130 0 0 chr4 102137439 102137485 -100190862 + MLT2D LTR ERVL 352 397 0 2046 128 7 0 chr4 102137505 102137811 -100190536 - AluSx SINE Alu -4 308 1 262 347 32 16 chr4 102137833 102137957 -100190390 - MIR3 SINE MIR -48 160 35 633 249 10 66 chr4 102137987 102138184 -100190163 - MER5A DNA MER1_type -3 186 1 281 330 10 10 chr4 102138289 102138392 -100189955 + MIR3 SINE MIR 78 180 -28 632 309 124 15 chr4 102138604 102139008 -100189339 - LTR16A LTR ERVL -2 448 1 1670 169 57 11 chr4 102139129 102139478 -100188869 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr4 102140653 102140675 -100187672 + AT_rich Low_complexity Low_complexity 1 22 0 243 356 20 0 chr4 102141899 102142000 -100186347 + MIR SINE MIR 1 103 -159 2378 11 0 0 chr4 102142049 102142309 -100186038 - AluYa5 SINE Alu -14 297 38 2808 6 0 3 chr4 102142515 102142827 -100185520 - AluYa5 SINE Alu 0 311 1 182 313 42 21 chr4 102144207 102144303 -100184044 + MIR3 SINE MIR 102 199 -9 1935 143 27 15 chr4 102144361 102144696 -100183651 + MER44D DNA MER2_type 1 609 0 6257 46 7 0 chr4 102145231 102145996 -100182351 + L1PA7 LINE L1 5310 6079 -75 3083 271 49 16 chr4 102145996 102147127 -100181220 + L1ME LINE L1 4018 5185 -961 22 70 0 0 chr4 102147222 102147265 -100181082 + AT_rich Low_complexity Low_complexity 1 43 0 1699 251 23 17 chr4 102147487 102148000 -100180347 + L1ME LINE L1 5224 5735 -431 1726 93 0 0 chr4 102148524 102148760 -100179587 - L1PA8A LINE L1 -534 5597 5362 * 1890 99 3 0 chr4 102148758 102149040 -100179307 + L1PA8A LINE L1 5071 5353 -793 3547 167 15 41 chr4 102149040 102149718 -100178629 - Tigger1 DNA MER2_type -1757 661 2 346 333 57 23 chr4 102150471 102150648 -100177699 + MIR SINE MIR 34 216 -46 562 282 33 26 chr4 102151454 102151656 -100176691 - MIR SINE MIR -36 172 11 27 49 0 0 chr4 102152141 102152182 -100176165 + AT_rich Low_complexity Low_complexity 1 41 0 1976 160 8 30 chr4 102154577 102154940 -100173407 + THE1A LTR MaLR 1 355 0 10471 117 18 7 chr4 102154940 102156503 -100171844 + THE1A-int LTR MaLR 1 1580 0 1995 146 11 30 chr4 102156503 102156865 -100171482 + THE1A LTR MaLR 1 355 0 424 364 24 19 chr4 102156883 102157089 -100171258 - LTR16C LTR ERVL -9 482 276 258 95 0 0 chr4 102158846 102158888 -100169459 + (CA)n Simple_repeat Simple_repeat 1 42 0 294 29 0 0 chr4 102160587 102160622 -100167725 + (TG)n Simple_repeat Simple_repeat 2 36 0 197 295 36 96 chr4 102160659 102160825 -100167522 + MIR SINE MIR 57 212 -50 28 0 0 0 chr4 102162593 102162621 -100165726 + AT_rich Low_complexity Low_complexity 1 28 0 35 88 0 0 chr4 102163287 102163378 -100164969 + AT_rich Low_complexity Low_complexity 1 91 0 457 348 47 21 chr4 102163519 102163752 -100164595 - MIR SINE MIR 0 262 24 490 257 20 40 chr4 102164057 102164205 -100164142 + LTR33 LTR ERVL 102 246 -275 312 250 71 0 chr4 102165405 102165489 -100162858 - MLT1H LTR MaLR -12 537 448 855 247 24 56 chr4 102165520 102165807 -100162540 - MLT1H LTR MaLR -259 290 13 1986 122 0 7 chr4 102167764 102168082 -100160265 - AluSg1 SINE Alu 0 309 1 344 250 72 26 chr4 102168382 102168534 -100159813 - MER103 DNA DNA -6 160 2 207 108 27 0 chr4 102168819 102168856 -100159491 + A-rich Low_complexity Low_complexity 5 42 0 358 276 55 111 chr4 102169129 102169346 -100159001 - MIR SINE MIR -11 251 47 476 315 160 0 chr4 102169425 102169638 -100158709 + MIR SINE MIR 8 254 -8 672 277 111 24 chr4 102169891 102170180 -100158167 - HAL1 LINE L1 -697 1810 1497 283 254 132 18 chr4 102170197 102170311 -100158036 - MLT-int LTR MaLR -1017 718 592 2973 234 3 3 chr4 102170333 102170948 -100157399 - MSTD-int LTR MaLR -1119 616 2 1022 166 21 81 chr4 102170950 102171185 -100157162 - MSTD LTR MaLR 0 396 176 661 137 38 151 chr4 102171229 102171441 -100156906 - MSTD LTR MaLR -208 188 1 272 111 148 0 chr4 102171444 102171498 -100156849 - HAL1 LINE L1 -1471 1036 975 4160 229 62 47 chr4 102171518 102172308 -100156039 - L1MC4a LINE L1 0 7808 6983 204 97 0 0 chr4 102172308 102172339 -100156008 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4160 229 62 47 chr4 102172339 102173042 -100155305 - L1MC4a LINE L1 -825 6983 6292 1336 202 115 60 chr4 102173043 102173479 -100154868 - MLT1C LTR MaLR 0 467 8 436 263 41 16 chr4 102173480 102173674 -100154673 - L1MD3 LINE L1 -1710 6285 6087 449 277 56 47 chr4 102173758 102173941 -100154406 - HAL1 LINE L1 -1534 973 786 297 75 0 0 chr4 102173941 102173981 -100154366 + (TG)n Simple_repeat Simple_repeat 1 40 0 449 277 56 47 chr4 102173981 102174010 -100154337 - HAL1 LINE L1 -1721 786 759 502 369 109 22 chr4 102174379 102174913 -100153434 - L2 LINE L2 -622 2692 2113 431 243 146 38 chr4 102175187 102175426 -100152921 - L1ME4a LINE L1 -21 6100 5836 227 284 15 0 chr4 102176800 102176867 -100151480 + MIR SINE MIR 187 254 -8 777 168 29 63 chr4 102177423 102177601 -100150746 - MSTB1 LTR MaLR -158 270 93 * 940 241 38 120 chr4 102177598 102178122 -100150225 + MER34 LTR ERV1 44 524 -18 1473 219 103 27 chr4 102178661 102179144 -100149203 - MLT2B1 LTR ERVL 0 520 1 206 136 34 51 chr4 102179595 102179654 -100148693 + T-rich Low_complexity Low_complexity 5 62 0 198 0 0 0 chr4 102179669 102179691 -100148656 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 231 284 78 39 chr4 102180249 102180351 -100147996 + L2 LINE L2 3195 3300 -13 245 118 20 0 chr4 102181423 102181474 -100146873 + CT-rich Low_complexity Low_complexity 2 53 0 227 333 49 0 chr4 102183869 102183950 -100144397 - L2 LINE L2 -32 3281 3197 808 212 67 16 chr4 102186357 102186550 -100141797 - MSTB1 LTR MaLR 0 432 230 436 95 81 0 chr4 102186563 102186637 -100141710 - MSTB1 LTR MaLR -352 80 1 3605 162 46 23 chr4 102186970 102187705 -100140642 - Tigger3(Golem) DNA MER2_type -1 3028 2277 614 196 0 0 chr4 102187701 102187803 -100140544 - Tigger3(Golem) DNA MER2_type -2926 103 2 * 220 339 47 16 chr4 102187877 102188004 -100140343 + L2 LINE L2 2227 2357 -957 348 250 116 64 chr4 102188265 102188437 -100139910 + MIR SINE MIR 49 229 -33 1986 194 6 6 chr4 102189164 102189525 -100138822 + MLT1A1 LTR MaLR 5 365 0 259 343 69 62 chr4 102189666 102190101 -100138246 + L2 LINE L2 2185 2622 -692 430 284 31 24 chr4 102190130 102190257 -100138090 + MIR SINE MIR 3 130 -132 301 354 42 21 chr4 102190252 102190396 -100137951 + L2 LINE L2 2948 3094 -178 * 180 111 0 0 chr4 102193330 102193357 -100134990 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 788 300 14 0 chr4 102193389 102193599 -100134748 - MIR SINE MIR 0 262 50 397 419 38 31 chr4 102197712 102198001 -100130346 + L2 LINE L2 2972 3262 -10 312 395 57 11 chr4 102198482 102198745 -100129602 + L2 LINE L2 3017 3291 -22 21 36 0 0 chr4 102200374 102200402 -100127945 + AT_rich Low_complexity Low_complexity 1 28 0 323 356 78 29 chr4 102200740 102200945 -100127402 - MIR SINE MIR -46 216 2 355 308 178 56 chr4 102201089 102201590 -100126757 + L2 LINE L2 2761 3312 -1 6439 72 56 10 chr4 102202288 102203539 -100124808 - L1PA7 LINE L1 -1 6153 4879 10296 109 7 2 chr4 102203539 102205001 -100123346 - L1P3 LINE L1 -4991 1470 2 890 275 86 48 chr4 102205421 102206186 -100122161 + L1MC2 LINE L1 788 1537 -4869 390 241 35 7 chr4 102206274 102206419 -100121928 + L1MC2 LINE L1 3001 3149 -3257 1219 237 67 3 chr4 102206428 102206816 -100121531 + L1MC2 LINE L1 4688 5100 -1306 245 109 43 22 chr4 102206835 102206881 -100121466 + Tigger5 DNA MER2_type 2245 2291 -32 234 220 0 20 chr4 102206895 102206945 -100121402 - Alu SINE Alu -8 294 246 569 208 8 39 chr4 102206970 102207100 -100121247 - FLAM_C SINE Alu -6 127 2 501 161 25 0 chr4 102207100 102207181 -100121166 + Tigger5 DNA MER2_type 2241 2323 0 4488 193 29 21 chr4 102207181 102208579 -100119768 + L1MC2 LINE L1 5103 6504 -100 774 175 0 15 chr4 102208583 102208720 -100119627 + MER20 DNA MER1_type 85 219 0 988 168 11 37 chr4 102209608 102209798 -100118549 + MER20 DNA MER1_type 35 219 0 1490 144 58 133 chr4 102209958 102210334 -100118013 - MER7A DNA MER2_type 0 346 1 572 291 29 6 chr4 102211777 102211952 -100116395 - L2 LINE L2 -689 2625 2447 186 43 0 0 chr4 102212458 102212481 -100115866 + (TA)n Simple_repeat Simple_repeat 2 24 0 321 254 89 82 chr4 102212772 102213212 -100115135 - L1MEc LINE L1 -2744 3471 3029 49 18 0 0 chr4 102213219 102213275 -100115072 + AT_rich Low_complexity Low_complexity 1 56 0 1002 304 70 21 chr4 102213283 102213757 -100114590 - L1ME3A LINE L1 -10 6160 5664 694 220 40 0 chr4 102213782 102213932 -100114415 + MER88 LTR ERVL 5 160 -304 517 258 16 8 chr4 102214237 102214361 -100113986 - L1ME3A LINE L1 -523 5647 5523 842 273 59 29 chr4 102214363 102215054 -100113293 + L1ME LINE L1 4813 5524 -640 370 284 186 26 chr4 102215207 102215552 -100112795 - L1MEc LINE L1 -3486 2729 2330 225 0 0 0 chr4 102215618 102215643 -100112704 + (A)n Simple_repeat Simple_repeat 1 25 0 1184 196 108 47 chr4 102216068 102216409 -100111938 - MLT1A1 LTR MaLR -3 362 1 230 132 0 92 chr4 102216726 102216802 -100111545 + (TTTTTA)n Simple_repeat Simple_repeat 4 72 0 302 316 52 6 chr4 102216814 102216988 -100111359 - L1MEc LINE L1 -4704 1692 1511 1728 158 6 59 chr4 102216993 102217316 -100111031 - AluSx SINE Alu -6 306 1 21 82 0 0 chr4 102217496 102217545 -100110802 + GC_rich Low_complexity Low_complexity 1 49 0 366 349 23 11 chr4 102217916 102218091 -100110256 + MIR SINE MIR 2 178 -84 2499 165 53 36 chr4 102218093 102218638 -100109709 + MER4D LTR ERV1 113 901 -2 1354 178 0 0 chr4 102218700 102218792 -100109555 - MER46A DNA MER2_type 0 236 145 631 226 26 26 chr4 102218792 102218947 -100109400 + MER46A DNA MER2_type 1 155 -81 365 252 92 17 chr4 102218964 102219083 -100109264 + MER39 LTR ERV1 12 139 -568 * 881 225 160 51 chr4 102219062 102219436 -100108911 + MER39 LTR ERV1 268 682 -25 369 298 77 42 chr4 102219989 102220157 -100108190 + MER5A DNA MER1_type 7 180 -9 25 0 0 0 chr4 102220331 102220356 -100107991 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 102220659 102220681 -100107666 + AT_rich Low_complexity Low_complexity 1 22 0 198 303 141 20 chr4 102220684 102220783 -100107564 + L3 LINE CR1 366 476 -1101 474 335 59 4 chr4 102220785 102221021 -100107326 + L3 LINE CR1 870 1118 -459 310 342 94 0 chr4 102221036 102221153 -100107194 + L3 LINE CR1 1449 1576 -1 23 0 0 0 chr4 102222272 102222295 -100106052 + AT_rich Low_complexity Low_complexity 1 23 0 563 307 83 51 chr4 102222315 102222744 -100105603 + MLT1J LTR MaLR 1 542 -73 329 105 19 48 chr4 102222970 102223075 -100105272 + (TA)n Simple_repeat Simple_repeat 2 103 0 2014 60 0 4 chr4 102223913 102224162 -100104185 + AluY SINE Alu 53 300 -11 222 91 0 0 chr4 102224950 102224983 -100103364 + (TC)n Simple_repeat Simple_repeat 2 34 0 225 303 0 15 chr4 102225098 102225164 -100103183 + GA-rich Low_complexity Low_complexity 4 68 0 312 70 0 0 chr4 102226664 102226707 -100101640 + (A)n Simple_repeat Simple_repeat 1 43 0 371 307 124 0 chr4 102227591 102227744 -100100603 + L3 LINE CR1 1404 1575 -2 225 0 0 0 chr4 102229690 102229715 -100098632 + (TTA)n Simple_repeat Simple_repeat 2 26 0 963 159 21 0 chr4 102229717 102229862 -100098485 - AluSg/x SINE Alu -33 279 132 237 254 30 15 chr4 102230802 102230869 -100097478 - MIR SINE MIR -117 145 78 3121 121 53 6 chr4 102231446 102231934 -100096413 + MER9 LTR ERVK 1 511 0 3768 105 28 21 chr4 102231934 102232498 -100095849 + HERVK9 LTR ERVK 1 568 -5348 2138 107 19 0 chr4 102232496 102232805 -100095542 + HERVK9 LTR ERVK 1424 1738 -4178 * 372 320 27 20 chr4 102233158 102233452 -100094895 - L1M4 LINE L1 -3383 2763 2468 1757 140 30 0 chr4 102333570 102333835 -99994512 - AluJb SINE Alu -39 273 1 2500 80 3 0 chr4 102333849 102334161 -99994186 - AluSp SINE Alu 0 313 1 236 167 93 0 chr4 102337644 102337698 -99990649 - MIR SINE MIR -58 204 146 306 167 107 24 chr4 102337737 102337821 -99990526 - MIR SINE MIR -58 204 114 388 328 38 8 chr4 102338110 102338241 -99990106 + MIR SINE MIR 13 147 -115 945 329 140 21 chr4 102338268 102339099 -99989248 - L2 LINE L2 -5 3308 2368 236 301 194 0 chr4 102339092 102339195 -99989152 + MIR SINE MIR 140 262 0 * 627 369 85 35 chr4 102339225 102339930 -99988417 + L2 LINE L2 2508 3236 -36 1345 194 161 15 chr4 102340142 102340483 -99987864 - MSTA LTR MaLR 0 428 38 547 165 0 10 chr4 102340631 102340728 -99987619 - MSTA LTR MaLR -332 96 1 1701 183 0 30 chr4 102340822 102341117 -99987230 + AluJb SINE Alu 1 286 -26 3084 128 44 2 chr4 102341216 102341693 -99986654 - LOR1a LTR ERV1 0 497 1 1976 160 12 62 chr4 102343967 102344373 -99983974 + MLT1B LTR MaLR 1 386 -4 2024 132 0 0 chr4 102344415 102344695 -99983652 + AluSx SINE Alu 1 280 -32 950 103 7 0 chr4 102344695 102344840 -99983507 + (GAAA)n Simple_repeat Simple_repeat 2 147 0 417 86 0 0 chr4 102344840 102344898 -99983449 + (GGGAA)n Simple_repeat Simple_repeat 2 59 0 1183 258 41 49 chr4 102346203 102346571 -99981776 - LTR16A LTR ERVL -8 442 78 367 298 43 67 chr4 102346648 102347021 -99981326 - HERV16 LTR ERVL -18 4978 4615 462 346 30 17 chr4 102347089 102347326 -99981021 - HERV16 LTR ERVL -701 4953 4714 317 261 0 76 chr4 102347388 102347507 -99980840 - HERV16 LTR ERVL -1092 4672 4563 * 367 271 40 57 chr4 102347493 102347670 -99980677 - HERV16 LTR ERVL -3251 1745 1572 22 0 0 0 chr4 102348855 102348877 -99979470 + AT_rich Low_complexity Low_complexity 1 22 0 1292 305 20 14 chr4 102349128 102349574 -99978773 - LTR16A LTR ERVL 0 450 2 324 223 68 29 chr4 102350192 102350295 -99978052 - LTR16C LTR ERVL -7 484 378 * 974 256 86 19 chr4 102350294 102350563 -99977784 - LTR16C LTR ERVL -62 429 143 226 338 88 72 chr4 102351497 102351667 -99976680 - L2 LINE L2 -452 2862 2696 1554 204 147 45 chr4 102351667 102352178 -99976169 - MER34B LTR ERV1 0 565 3 226 338 88 72 chr4 102352178 102352380 -99975967 - L2 LINE L2 -618 2696 2484 321 297 16 39 chr4 102352905 102353033 -99975314 + L1MDa LINE L1 2449 2573 -3967 236 295 87 49 chr4 102353052 102353340 -99975007 + L1MDa LINE L1 2600 2898 -3642 699 311 105 12 chr4 102353421 102353718 -99974629 - MLT1G1 LTR MaLR -24 571 153 379 311 52 22 chr4 102353757 102353892 -99974455 - MLT1G1 LTR MaLR -456 139 1 5586 154 32 17 chr4 102354012 102355728 -99972619 + L1MA7 LINE L1 4556 6291 0 375 183 0 0 chr4 102355753 102355824 -99972523 - L1 LINE L1 -1520 4626 4556 26 74 0 0 chr4 102356006 102356060 -99972287 + AT_rich Low_complexity Low_complexity 1 54 0 349 266 227 7 chr4 102356108 102356262 -99972085 - MER5A DNA MER1_type -1 188 1 2789 7 0 0 chr4 102356263 102356564 -99971783 + AluYa5 SINE Alu 1 301 -10 22 39 0 39 chr4 102358045 102358064 -99970283 + AT_rich Low_complexity Low_complexity 1 19 -30 2217 129 0 7 chr4 102358064 102358373 -99969974 + AluSx SINE Alu 1 307 -5 22 39 0 39 chr4 102358373 102358404 -99969943 + AT_rich Low_complexity Low_complexity 19 49 0 181 325 26 26 chr4 102358461 102358538 -99969809 + MIR SINE MIR 86 162 -100 1900 106 60 4 chr4 102358920 102359208 -99969139 + AluSc SINE Alu 1 303 0 252 315 74 28 chr4 102359543 102359651 -99968696 - L2 LINE L2 -4 3268 3156 193 321 19 0 chr4 102359908 102359961 -99968386 - L2 LINE L2 -10 3262 3209 925 170 67 137 chr4 102361517 102361646 -99966701 + L1MC1 LINE L1 214 353 -6073 227 83 0 0 chr4 102361646 102361682 -99966665 + Tigger5 DNA MER2_type 2215 2250 -73 925 170 67 137 chr4 102361682 102361787 -99966560 + L1MC1 LINE L1 353 464 -5962 * 3667 194 39 47 chr4 102361778 102363936 -99964411 + L1MC1 LINE L1 4523 6588 -25 207 0 0 0 chr4 102363938 102363961 -99964386 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1900 156 42 20 chr4 102363964 102364322 -99964025 + MER47A DNA MER2_type 1 366 0 29 70 0 0 chr4 102364324 102364381 -99963966 + AT_rich Low_complexity Low_complexity 1 57 0 227 236 0 18 chr4 102364561 102364616 -99963731 + MIR SINE MIR 99 152 -110 1520 156 56 19 chr4 102364630 102364937 -99963410 - AluSx SINE Alu 0 322 6 229 309 55 77 chr4 102365292 102365512 -99962835 - MIR SINE MIR 0 262 48 379 291 40 46 chr4 102365856 102366007 -99962340 - MIR SINE MIR -73 189 40 366 61 0 0 chr4 102366995 102367044 -99961303 + (TG)n Simple_repeat Simple_repeat 1 49 0 2842 160 6 0 chr4 102367241 102367717 -99960630 - L1PA16 LINE L1 -5 6161 5683 2435 62 3 10 chr4 102367718 102368025 -99960322 - AluY SINE Alu -6 305 1 4352 92 18 83 chr4 102368033 102368823 -99959524 - L1MA1 LINE L1 -7 6295 5558 29 0 0 0 chr4 102369248 102369277 -99959070 + AT_rich Low_complexity Low_complexity 1 29 0 1901 144 3 49 chr4 102369277 102369604 -99958743 - AluSx SINE Alu 0 312 1 22 0 0 0 chr4 102370781 102370803 -99957544 + AT_rich Low_complexity Low_complexity 1 22 0 194 243 355 19 chr4 102371256 102371363 -99956984 + MIR SINE MIR 10 152 -110 204 250 0 78 chr4 102371379 102371443 -99956904 + L2 LINE L2 3204 3262 -10 27 29 0 0 chr4 102371758 102371792 -99956555 + AT_rich Low_complexity Low_complexity 1 34 0 308 294 55 55 chr4 102372115 102372261 -99956086 - L2 LINE L2 0 3272 3127 319 367 76 9 chr4 102372337 102372547 -99955800 + L2 LINE L2 2643 2866 -448 207 314 29 0 chr4 102372595 102372665 -99955682 + L2 LINE L2 3227 3298 -15 271 48 81 0 chr4 102372801 102372863 -99955484 + (TA)n Simple_repeat Simple_repeat 1 67 0 332 273 68 8 chr4 102372937 102373069 -99955278 + MER103 DNA DNA 26 165 -1 23 0 0 0 chr4 102374503 102374526 -99953821 + AT_rich Low_complexity Low_complexity 1 23 0 242 245 0 0 chr4 102374634 102374687 -99953660 + A-rich Low_complexity Low_complexity 1 53 0 279 0 0 0 chr4 102374733 102374764 -99953583 + (CA)n Simple_repeat Simple_repeat 2 32 0 421 337 126 5 chr4 102375734 102375924 -99952423 - MIR SINE MIR -4 258 46 33367 50 5 0 chr4 102375963 102379901 -99948446 - L1PA4 LINE L1 -1 6154 2186 1842 18 9 0 chr4 102379901 102380122 -99948225 - L1PA2 LINE L1 -1 6154 5932 33367 50 5 0 chr4 102380122 102381155 -99947192 - L1PA4 LINE L1 -3969 2186 1160 249 182 0 0 chr4 102381274 102381329 -99947018 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 180 250 36 36 chr4 102381367 102381423 -99946924 + L2 LINE L2 1892 1947 -1367 2849 0 0 0 chr4 102381482 102381791 -99946556 + AluYa5 SINE Alu 1 309 -2 233 335 71 27 chr4 102381990 102382226 -99946121 + L2 LINE L2 3002 3267 -5 1185 212 65 98 chr4 102382602 102382999 -99945348 + MLT1B LTR MaLR 1 384 -6 182 299 107 46 chr4 102383979 102384176 -99944171 + L2 LINE L2 2624 2832 -482 257 240 16 168 chr4 102384480 102384605 -99943742 + L2 LINE L2 3200 3305 -8 21 71 0 0 chr4 102384693 102384735 -99943612 + AT_rich Low_complexity Low_complexity 1 42 0 227 269 66 48 chr4 102384742 102384909 -99943438 + L1ME4a LINE L1 5931 6100 -21 607 291 70 4 chr4 102384928 102385158 -99943189 - MLT1L LTR MaLR -14 601 357 397 249 89 80 chr4 102385208 102385445 -99942902 - MLT1L LTR MaLR -372 243 5 581 167 0 10 chr4 102387567 102387663 -99940684 + MLT1J LTR MaLR 79 173 -338 211 209 0 23 chr4 102389904 102389947 -99938400 + (TG)n Simple_repeat Simple_repeat 1 42 0 531 288 101 15 chr4 102391944 102392142 -99936205 - MIR SINE MIR -37 225 11 310 317 7 35 chr4 102392142 102392287 -99936060 + MER117 DNA MER1_type 1 141 -56 7373 37 3 0 chr4 102392306 102393643 -99934704 - L1PA5 LINE L1 -6 6148 4811 25106 56 2 0 chr4 102393643 102396864 -99931483 + L1P LINE L1 1122 4350 -1796 1486 221 3 3 chr4 102397208 102397516 -99930831 + AluJo SINE Alu 1 308 -4 1717 235 128 78 chr4 102398007 102398617 -99929730 + MER97a DNA MER1_type? 1 579 -315 1966 114 4 0 chr4 102398617 102398918 -99929429 + AluSg SINE Alu 1 302 0 1717 235 128 78 chr4 102398918 102398933 -99929414 + MER97a DNA MER1_type? 579 592 -302 2026 200 54 44 chr4 102398933 102399433 -99928914 + MLT1D LTR MaLR 1 505 0 1717 235 128 78 chr4 102399433 102399595 -99928752 + MER97a DNA MER1_type? 592 829 -65 232 291 87 29 chr4 102399909 102400012 -99928335 + L2 LINE L2 3204 3312 -1 6059 117 12 6 chr4 102401639 102402575 -99925772 + L1MA1 LINE L1 5362 6302 0 32 0 0 0 chr4 102402575 102402607 -99925740 + AT_rich Low_complexity Low_complexity 1 32 0 306 0 0 0 chr4 102402655 102402689 -99925658 + (TTA)n Simple_repeat Simple_repeat 3 36 0 7377 36 6 3 chr4 102402689 102403738 -99924609 - L1PA3 LINE L1 -18 6137 5089 510 16 0 0 chr4 102403738 102403800 -99924547 + L1PA3 LINE L1 5026 5087 -1059 11020 56 4 2 chr4 102403881 102406113 -99922234 + L1PA6 LINE L1 3933 6154 0 24 0 0 0 chr4 102406682 102406706 -99921641 + AT_rich Low_complexity Low_complexity 1 24 0 274 326 15 38 chr4 102407206 102407338 -99921009 + L2 LINE L2 3138 3266 -6 364 291 132 27 chr4 102407614 102407985 -99920362 - L1MEc LINE L1 -2053 4162 3753 623 241 7 0 chr4 102408111 102408252 -99920095 - Charlie1 DNA MER1_type 0 2761 2620 * 889 214 68 36 chr4 102408246 102408466 -99919881 - Charlie1 DNA MER1_type -2534 227 1 518 305 50 17 chr4 102408636 102408875 -99919472 + MLT1L LTR MaLR 359 605 -10 489 291 111 69 chr4 102408881 102409448 -99918899 - L1MEc LINE L1 -2467 3748 3158 25 31 0 0 chr4 102409498 102409530 -99918817 + AT_rich Low_complexity Low_complexity 1 32 0 290 299 57 19 chr4 102409597 102409754 -99918593 - L1ME4a LINE L1 -238 5883 5721 32 0 0 0 chr4 102409754 102409786 -99918561 + AT_rich Low_complexity Low_complexity 1 32 0 2325 154 30 14 chr4 102409791 102410231 -99918116 - L1MA4 LINE L1 -16 6284 5838 323 266 56 65 chr4 102411500 102411721 -99916626 - L1MEc LINE L1 -3864 2351 2171 2873 184 46 32 chr4 102412120 102412800 -99915547 - L1MB8 LINE L1 -13 6165 5477 6492 137 20 10 chr4 102412817 102414325 -99914022 - L1MA2 LINE L1 0 7723 6199 * 11560 162 66 11 chr4 102414318 102417643 -99910704 - L1MA2 LINE L1 -2634 4931 1417 556 134 0 90 chr4 102417640 102417774 -99910573 - L1MA2 LINE L1 -7430 135 14 * 816 179 32 46 chr4 102417775 102418082 -99910265 - L1MB8 LINE L1 -704 5480 5183 23 33 0 0 chr4 102418450 102418480 -99909867 + AT_rich Low_complexity Low_complexity 1 30 0 1466 209 10 19 chr4 102419364 102419671 -99908676 - AluJo SINE Alu -8 304 1 26 30 0 0 chr4 102420107 102420140 -99908207 + AT_rich Low_complexity Low_complexity 1 33 0 1035 336 29 12 chr4 102420261 102420672 -99907675 + L1MA4 LINE L1 295 712 -5537 4888 252 78 23 chr4 102421984 102423796 -99904551 + L1MA4 LINE L1 539 2438 -3890 6391 170 28 6 chr4 102423799 102426003 -99902344 + L1MA4 LINE L1 4230 6481 -1 416 329 64 46 chr4 102426532 102426815 -99901532 - L2 LINE L2 -92 3221 2934 244 248 96 48 chr4 102426897 102427022 -99901325 - MER94 DNA DNA -1 133 3 858 20 55 14 chr4 102427661 102427807 -99900540 + (TAGA)n Simple_repeat Simple_repeat 1 152 0 21 36 0 0 chr4 102427995 102428023 -99900324 + AT_rich Low_complexity Low_complexity 1 28 0 181 333 45 0 chr4 102428185 102428251 -99900096 + L3 LINE CR1 930 998 -579 224 298 25 50 chr4 102428535 102428656 -99899691 + L3 LINE CR1 1234 1351 -226 1295 191 207 18 chr4 102428726 102429276 -99899071 - MER39 LTR ERV1 0 707 1 893 226 63 70 chr4 102429983 102430558 -99897789 + MER76 LTR ERV 1 637 -51 1250 193 67 32 chr4 102431269 102431611 -99896736 - L1MD1 LINE L1 0 6636 6283 2141 251 58 38 chr4 102431614 102431721 -99896626 - L1PA16 LINE L1 -9 6157 6054 1895 166 41 22 chr4 102431721 102432089 -99896258 - THE1C LTR MaLR 0 375 1 2141 251 58 38 chr4 102432089 102432251 -99896096 - L1PA16 LINE L1 -112 6054 5521 2630 195 60 42 chr4 102432251 102433163 -99895184 - L1MD1 LINE L1 -346 6290 5340 234 91 0 0 chr4 102433163 102433196 -99895151 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2630 195 60 42 chr4 102433196 102433287 -99895060 - L1MD1 LINE L1 -1296 5340 5252 3542 230 48 21 chr4 102433329 102434134 -99894213 - MER21B LTR ERV1 -21 842 16 3522 239 76 42 chr4 102434162 102435008 -99893339 - L1MD1 LINE L1 -1301 5239 4332 1423 73 10 5 chr4 102435008 102435200 -99893147 - L1PA3 LINE L1 0 6155 5963 3522 239 76 42 chr4 102435200 102435657 -99892690 - L1MD1 LINE L1 -2208 4332 3892 4015 163 56 80 chr4 102435710 102436625 -99891722 - MER21A LTR ERV1 -16 915 21 234 0 0 0 chr4 102436625 102436651 -99891696 + (TG)n Simple_repeat Simple_repeat 2 27 0 4015 163 56 80 chr4 102436651 102436664 -99891683 - MER21A LTR ERV1 -910 21 9 180 111 0 0 chr4 102436665 102436692 -99891655 + (CATATA)n Simple_repeat Simple_repeat 4 30 0 790 202 92 0 chr4 102436706 102436944 -99891403 - L1MD1 LINE L1 -3155 3385 3126 797 145 7 14 chr4 102436948 102437086 -99891261 - L1MD1 LINE L1 -6281 259 123 288 77 0 0 chr4 102437693 102437732 -99890615 + (TA)n Simple_repeat Simple_repeat 2 40 0 497 274 78 29 chr4 102437997 102438201 -99890146 + MIR SINE MIR 49 262 0 25 31 0 0 chr4 102438209 102438241 -99890106 + AT_rich Low_complexity Low_complexity 1 32 0 2689 139 5 19 chr4 102440396 102440826 -99887521 + MSTC LTR MaLR 1 424 -4 2205 119 3 0 chr4 102440910 102441222 -99887125 + AluSp SINE Alu 1 313 0 356 304 226 10 chr4 102441229 102441729 -99886618 + L2 LINE L2 1671 2278 -1036 445 220 11 11 chr4 102442105 102442196 -99886151 - FRAM/FAM SINE Alu -86 90 1 2371 49 0 14 chr4 102442304 102442612 -99885735 - AluY SINE Alu 0 304 1 363 399 54 15 chr4 102442755 102443091 -99885256 + L2 LINE L2 2431 2779 -535 1134 311 91 9 chr4 102443295 102443748 -99884599 + L2 LINE L2 2488 2977 -337 2819 180 19 8 chr4 102443824 102444352 -99883995 - MER34 LTR ERV1 -6 536 3 488 268 105 10 chr4 102444435 102444644 -99883703 + L2 LINE L2 3021 3249 -64 198 167 0 0 chr4 102444655 102444691 -99883656 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 285 210 0 0 chr4 102444895 102444957 -99883390 + (TA)n Simple_repeat Simple_repeat 1 62 0 1628 218 99 9 chr4 102445156 102445582 -99882765 - MLT1C LTR MaLR 0 467 4 213 324 15 15 chr4 102445942 102446010 -99882337 - L2 LINE L2 -5 3267 3200 10860 124 14 1 chr4 102446379 102448864 -99879483 - L1PA8A LINE L1 -1 6130 3663 264 269 39 0 chr4 102449299 102449429 -99878918 + (TA)n Simple_repeat Simple_repeat 2 136 0 284 259 103 89 chr4 102449497 102449992 -99878355 - MER34 LTR ERV1 0 631 140 23 54 0 0 chr4 102451295 102451332 -99877015 + AT_rich Low_complexity Low_complexity 1 37 0 259 261 0 14 chr4 102451332 102451401 -99876946 + (TATATG)n Simple_repeat Simple_repeat 6 73 0 239 325 34 34 chr4 102454822 102454939 -99873408 - MIR SINE MIR -72 190 74 997 259 155 30 chr4 102455134 102455644 -99872703 + MLT1E LTR MaLR 1 567 0 195 42 0 0 chr4 102456836 102456860 -99871487 + (CA)n Simple_repeat Simple_repeat 2 25 0 22 35 0 0 chr4 102457431 102457460 -99870887 + AT_rich Low_complexity Low_complexity 1 29 0 2747 186 4 6 chr4 102458146 102458650 -99869697 + L1PA10 LINE L1 2 504 -5371 * 25080 149 13 22 chr4 102458645 102464399 -99863948 + L1PA10 LINE L1 766 6479 -4 1281 283 73 38 chr4 102465190 102466187 -99862160 + L1MCc LINE L1 1196 2354 -4587 21 0 0 0 chr4 102466224 102466245 -99862102 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 102466330 102466359 -99861988 + AT_rich Low_complexity Low_complexity 1 29 0 492 241 148 19 chr4 102466431 102466688 -99861659 + L1MCc LINE L1 2693 2982 -4140 923 63 0 0 chr4 102466701 102466812 -99861535 - AluSc SINE Alu -184 125 15 1341 101 11 0 chr4 102466812 102466990 -99861357 + AluSc SINE Alu 119 298 -11 1690 258 64 16 chr4 102466993 102467275 -99861072 + L1MCc LINE L1 2957 3224 -3717 2081 92 34 3 chr4 102467275 102467568 -99860779 + AluY SINE Alu 1 302 -9 1690 258 64 16 chr4 102467568 102467988 -99860359 + L1MCc LINE L1 3224 3693 -3248 24 32 0 0 chr4 102469173 102469204 -99859143 + AT_rich Low_complexity Low_complexity 1 31 0 410 297 58 7 chr4 102469220 102469358 -99858989 - MIR SINE MIR -29 233 89 1842 160 79 36 chr4 102469358 102469953 -99858394 - MER39 LTR ERV1 0 707 6 1545 277 58 20 chr4 102470111 102470613 -99857734 + MER74B LTR ERVL 84 604 -18 261 0 0 0 chr4 102470672 102470701 -99857646 + (CA)n Simple_repeat Simple_repeat 2 30 0 362 333 107 6 chr4 102472120 102472279 -99856068 + MIR SINE MIR 87 261 -1 2739 212 10 4 chr4 102472443 102472948 -99855399 - MLT2B1 LTR ERVL -12 508 1 325 313 106 26 chr4 102473148 102473413 -99854934 + L1ME4a LINE L1 5771 6056 -65 203 271 0 0 chr4 102473892 102473940 -99854407 - L2 LINE L2 -1 3312 3265 21 0 0 0 chr4 102474104 102474125 -99854222 + AT_rich Low_complexity Low_complexity 1 21 0 3360 167 20 5 chr4 102474320 102474913 -99853434 + MER7C DNA MER2_type 1 602 0 1321 154 35 0 chr4 102474994 102475221 -99853126 + MER46A DNA MER2_type 2 236 0 248 238 95 32 chr4 102475389 102475452 -99852895 - L2 LINE L2 0 3313 3247 629 161 73 40 chr4 102475925 102476049 -99852298 - FLAM_C SINE Alu -2 131 4 2083 108 31 0 chr4 102476603 102476891 -99851456 + AluSc SINE Alu 3 299 -10 2421 113 8 6 chr4 102477301 102477655 -99850692 - THE1A LTR MaLR 0 355 1 11262 92 15 22 chr4 102477655 102479246 -99849101 - THE1A-int LTR MaLR 0 1580 1 2033 137 17 25 chr4 102479246 102479604 -99848743 - THE1A LTR MaLR 0 355 1 1851 277 107 41 chr4 102480104 102481198 -99847149 + L2 LINE L2 2136 3312 -1 28 0 0 0 chr4 102482857 102482885 -99845462 + AT_rich Low_complexity Low_complexity 1 28 0 12067 88 6 6 chr4 102483072 102484027 -99844320 - L1PA7 LINE L1 -3 6151 5198 2517 173 38 10 chr4 102484027 102484506 -99843841 + LTR22B LTR ERVK 1 492 0 12067 88 6 6 chr4 102484506 102486047 -99842300 - L1PA7 LINE L1 -956 5198 3652 200 321 24 12 chr4 102486323 102486407 -99841940 - MIR SINE MIR -115 147 63 605 69 11 0 chr4 102486677 102486764 -99841583 + (TCTA)n Simple_repeat Simple_repeat 4 91 0 23 86 0 0 chr4 102487231 102487289 -99841058 + AT_rich Low_complexity Low_complexity 1 58 0 409 317 74 30 chr4 102487533 102487735 -99840612 - MIR SINE MIR -41 221 11 1980 218 70 44 chr4 102487834 102488408 -99839939 + MLT1E LTR MaLR 3 591 -2 2296 225 18 64 chr4 102489033 102489687 -99838660 - MLT1E2 LTR MaLR 0 626 3 3654 199 27 50 chr4 102490013 102490810 -99837537 - L1MB4 LINE L1 -13 6167 5405 1764 199 19 17 chr4 102490810 102491172 -99837175 + MLT1A1 LTR MaLR 3 365 0 3654 199 27 50 chr4 102491172 102491582 -99836765 - L1MB4 LINE L1 -775 5405 4987 699 256 63 153 chr4 102491917 102492635 -99835712 + MER77 LTR ERV1 7 601 -4 2412 115 5 35 chr4 102492635 102493010 -99835337 + THE1B LTR MaLR 1 364 0 32 67 0 0 chr4 102493887 102493947 -99834400 + AT_rich Low_complexity Low_complexity 1 60 0 2056 148 77 0 chr4 102494195 102494533 -99833814 - THE1B LTR MaLR 0 364 1 219 300 64 79 chr4 102494649 102494789 -99833558 - L2 LINE L2 -613 2701 2564 1761 199 32 3 chr4 102494915 102495262 -99833085 + MLT1A1 LTR MaLR 2 358 -7 353 346 53 57 chr4 102495284 102495755 -99832592 - L2 LINE L2 -955 2359 1891 29 28 0 0 chr4 102496513 102496549 -99831798 + AT_rich Low_complexity Low_complexity 1 36 0 586 208 25 8 chr4 102496564 102496684 -99831663 - FLAM_A SINE Alu -11 122 1 634 106 28 28 chr4 102497586 102497728 -99830619 + GA-rich Low_complexity Low_complexity 4 145 0 1870 182 34 51 chr4 102497733 102497899 -99830448 + MLT2D LTR ERVL 10 177 -237 1565 238 46 0 chr4 102497899 102498248 -99830099 - MLT1A1 LTR MaLR 0 365 1 1870 182 34 51 chr4 102498248 102498493 -99829854 + MLT2D LTR ERVL 177 414 0 182 197 33 0 chr4 102498509 102498570 -99829777 + (TGGA)n Simple_repeat Simple_repeat 3 65 0 558 248 23 52 chr4 102498606 102498803 -99829544 + MIR SINE MIR 17 205 -57 334 260 55 39 chr4 102498799 102498926 -99829421 - MIR SINE MIR -1 261 133 * 320 310 0 0 chr4 102498930 102499001 -99829346 + L2 LINE L2 3011 3081 -232 192 222 0 0 chr4 102499100 102499145 -99829202 + L2 LINE L2 3269 3313 0 207 167 0 0 chr4 102499147 102499183 -99829164 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 191 309 95 0 chr4 102499871 102499955 -99828392 - MIR SINE MIR -66 142 51 23 0 0 0 chr4 102500954 102500977 -99827370 + AT_rich Low_complexity Low_complexity 1 23 0 684 63 0 0 chr4 102501034 102501129 -99827218 + MLT2A1 LTR ERVL 1 95 -349 4106 59 0 0 chr4 102501229 102501751 -99826596 - L1P LINE L1 -1784 4362 3841 5713 41 4 4 chr4 102502290 102502999 -99825348 - L1PA3 LINE L1 0 6155 5447 1178 184 131 68 chr4 102503122 102503459 -99824888 + MER93b LTR ERV1 16 373 0 783 250 120 11 chr4 102504580 102504864 -99823483 + L1MC4 LINE L1 7556 7870 -172 27 0 0 0 chr4 102504914 102504941 -99823406 + AT_rich Low_complexity Low_complexity 1 27 0 2588 48 0 7 chr4 102505208 102505518 -99822829 - AluY SINE Alu -3 308 1 192 269 70 77 chr4 102505974 102506130 -99822217 + L2 LINE L2 3035 3189 -124 32 26 0 0 chr4 102506860 102506899 -99821448 + AT_rich Low_complexity Low_complexity 1 39 0 524 302 64 0 chr4 102507000 102507172 -99821175 + MER97b DNA MER1_type? 9 191 -862 1593 171 70 17 chr4 102507309 102507653 -99820694 - L1MC1 LINE L1 -6 6327 5966 7813 78 8 11 chr4 102507688 102508749 -99819598 - MER11C LTR ERVK -14 1057 1 1683 116 27 67 chr4 102508749 102509077 -99819270 - L1MC1 LINE L1 -358 5975 5661 * 2407 179 50 9 chr4 102509069 102509533 -99818814 - L1MCa LINE L1 -5901 525 43 806 184 23 52 chr4 102510309 102510483 -99817864 + Tigger7 DNA MER2_type 1 169 -381 1127 286 52 13 chr4 102510595 102510979 -99817368 - LTR16A LTR ERVL -45 405 7 9364 94 8 0 chr4 102511295 102513928 -99814419 - L1PA7 LINE L1 -3 6151 3332 184 29 29 29 chr4 102513975 102514009 -99814338 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7206 57 1 0 chr4 102514599 102516006 -99812341 + L1PA5 LINE L1 4740 6148 -6 25 31 0 0 chr4 102516136 102516168 -99812179 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr4 102516764 102516787 -99811560 + AT_rich Low_complexity Low_complexity 1 23 0 5790 123 16 2 chr4 102517045 102518398 -99809949 - L1PA14 LINE L1 -10 6151 4784 31 0 0 0 chr4 102518668 102518699 -99809648 + AT_rich Low_complexity Low_complexity 1 31 0 1830 155 49 30 chr4 102518794 102519161 -99809186 + MLT1C LTR MaLR 94 467 0 226 217 0 0 chr4 102519308 102519354 -99808993 + MSTB LTR MaLR 86 131 -301 6999 100 172 93 chr4 102519402 102520975 -99807372 - pTR5 LTR ERV1 0 2438 743 946 159 47 6 chr4 102520975 102521145 -99807202 + MSTB LTR MaLR 250 426 0 26 0 0 0 chr4 102521799 102521825 -99806522 + AT_rich Low_complexity Low_complexity 1 26 0 192 152 0 0 chr4 102521881 102521914 -99806433 + (TA)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr4 102521971 102521994 -99806353 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 102522384 102522412 -99805935 + AT_rich Low_complexity Low_complexity 1 28 0 6511 75 19 0 chr4 102522876 102523819 -99804528 - L1PA7 LINE L1 0 6154 5191 27684 103 9 7 chr4 102523820 102526604 -99801743 - L1PA7 LINE L1 -1011 5135 2335 302 0 26 0 chr4 102526604 102526642 -99801705 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 27684 103 9 7 chr4 102526642 102528004 -99800343 - L1PA7 LINE L1 -3811 2335 978 283 118 66 0 chr4 102528181 102528257 -99800090 + (TA)n Simple_repeat Simple_repeat 2 82 0 931 324 62 20 chr4 102528333 102528828 -99799519 + L2 LINE L2 2800 3313 0 688 342 93 27 chr4 102528842 102529541 -99798806 - L1M4 LINE L1 -1554 4592 3848 314 283 9 66 chr4 102529652 102529758 -99798589 - L2 LINE L2 -994 2320 2221 2315 72 0 44 chr4 102530199 102530519 -99797828 - AluY SINE Alu -5 306 1 423 0 0 0 chr4 102531603 102531650 -99796697 + (TG)n Simple_repeat Simple_repeat 2 48 0 25 31 0 0 chr4 102531782 102531814 -99796533 + AT_rich Low_complexity Low_complexity 1 32 0 183 42 0 0 chr4 102531869 102531893 -99796454 + (CA)n Simple_repeat Simple_repeat 2 25 0 479 324 27 5 chr4 102532433 102532618 -99795729 + L1MEc LINE L1 34 222 -6174 830 240 87 68 chr4 102532758 102533241 -99795106 + L1MB5 LINE L1 3198 3689 -2457 34 55 0 0 chr4 102533530 102533585 -99794762 + AT_rich Low_complexity Low_complexity 1 55 0 4085 216 24 13 chr4 102533682 102534728 -99793619 + L1MB5 LINE L1 4275 5331 -815 912 337 56 45 chr4 102534809 102535774 -99792573 - LTR57-int LTR ERVL -2345 2998 2023 2394 174 2 28 chr4 102536381 102536847 -99791500 + L1MB5 LINE L1 5685 6138 -36 219 154 0 0 chr4 102536931 102536970 -99791377 + A-rich Low_complexity Low_complexity 1 39 0 288 0 0 0 chr4 102539009 102539041 -99789306 + (TAAAA)n Simple_repeat Simple_repeat 1 32 0 2355 189 11 19 chr4 102539249 102539720 -99788627 - MLT1C LTR MaLR 0 467 1 476 322 23 38 chr4 102540493 102540734 -99787613 - MLT1I LTR MaLR -137 272 58 350 148 0 0 chr4 102541147 102541201 -99787146 - MSTB LTR MaLR -372 54 1 757 263 201 10 chr4 102541457 102541746 -99786601 + MLT1J2 LTR MaLR 104 447 -3 2419 111 5 22 chr4 102542321 102542691 -99785656 - THE1B LTR MaLR 0 364 1 2302 109 0 0 chr4 102542773 102543085 -99785262 + AluSx SINE Alu 1 312 0 25 99 0 0 chr4 102543090 102543171 -99785176 + AT_rich Low_complexity Low_complexity 1 81 0 214 192 14 27 chr4 102543251 102543324 -99785023 + CT-rich Low_complexity Low_complexity 3 74 0 1446 147 47 89 chr4 102543587 102543717 -99784630 - L1MA9 LINE L1 -2 6310 6176 2202 102 0 3 chr4 102543717 102544010 -99784337 + AluY SINE Alu 1 292 -19 1446 147 47 89 chr4 102544010 102544239 -99784108 - L1MA9 LINE L1 -136 6176 5966 5258 134 24 6 chr4 102544285 102545190 -99783157 - L1MA8 LINE L1 -102 6189 5271 195 42 0 0 chr4 102545533 102545557 -99782790 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr4 102545804 102545826 -99782521 + AT_rich Low_complexity Low_complexity 1 22 0 4512 173 51 5 chr4 102545940 102546844 -99781503 - L1MB3 LINE L1 -3 6180 5236 973 227 70 7 chr4 102546844 102547130 -99781217 - L1M4 LINE L1 -830 5316 5013 235 306 0 0 chr4 102547134 102547196 -99781151 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 17311 35 1 0 chr4 102547596 102549711 -99778636 + L1P LINE L1 3217 5333 -813 2230 114 27 163 chr4 102549811 102550338 -99778009 + Tigger7 DNA MER2_type 2132 2586 -1 250 298 99 19 chr4 102551168 102551329 -99777018 + L2 LINE L2 2262 2435 -879 23 86 0 0 chr4 102553488 102553546 -99774801 + AT_rich Low_complexity Low_complexity 1 58 0 284 345 9 26 chr4 102554336 102554452 -99773895 - MIR SINE MIR -138 124 11 316 295 74 88 chr4 102554736 102554924 -99773423 + L1MEd LINE L1 586 768 -5351 1389 216 65 3 chr4 102554924 102555248 -99773099 - MER2 DNA MER2_type 0 344 1 316 295 74 88 chr4 102555248 102555398 -99772949 + L1MEd LINE L1 768 919 -5200 790 272 109 42 chr4 102555406 102555855 -99772492 + L1MCb LINE L1 1 479 -5566 1539 131 45 0 chr4 102556140 102556362 -99771985 + AluSx SINE Alu 38 269 -43 495 133 24 0 chr4 102556461 102556544 -99771803 + MER2 DNA MER2_type 118 202 -143 1418 201 18 7 chr4 102556625 102556904 -99771443 + L1MC3 LINE L1 5585 5866 -1919 873 214 25 61 chr4 102556883 102557060 -99771287 + L1MC3 LINE L1 7508 7673 -112 * 1960 169 0 0 chr4 102557060 102557373 -99770974 + AluSq SINE Alu 1 313 0 873 214 25 61 chr4 102557373 102557475 -99770872 + L1MC3 LINE L1 7673 7777 -8 1270 282 144 31 chr4 102557659 102558915 -99769432 + L1M4 LINE L1 3807 5204 -942 672 91 0 0 chr4 102559018 102559106 -99769241 + MER4E LTR ERV1 679 766 0 714 286 116 59 chr4 102559132 102559520 -99768827 + MLT1K LTR MaLR 176 585 -3 744 240 10 21 chr4 102559852 102560044 -99768303 - MER4C LTR ERV1 0 465 276 1820 137 57 60 chr4 102560068 102560545 -99767802 - MER4A LTR ERV1 -240 424 1 246 283 87 58 chr4 102560558 102560696 -99767651 + MIR SINE MIR 49 190 -72 549 303 67 0 chr4 102560755 102560920 -99767427 + MER5A DNA MER1_type 11 186 -3 598 300 31 27 chr4 102562694 102562917 -99765430 - MIR SINE MIR -6 256 33 405 0 0 0 chr4 102562929 102562974 -99765373 + (TG)n Simple_repeat Simple_repeat 2 46 0 2279 105 0 0 chr4 102563274 102563570 -99764777 - AluSx SINE Alu -16 296 1 11870 104 7 4 chr4 102563611 102565290 -99763057 + L1P3 LINE L1 5 1689 -4772 25 51 0 0 chr4 102566792 102566831 -99761516 + AT_rich Low_complexity Low_complexity 1 39 0 743 297 103 22 chr4 102568666 102569555 -99758792 + L1MDb LINE L1 1003 2003 -4584 2201 86 0 27 chr4 102569577 102569869 -99758478 + AluY SINE Alu 1 284 -27 22 35 0 0 chr4 102569964 102569993 -99758354 + AT_rich Low_complexity Low_complexity 1 29 0 1456 181 22 3 chr4 102570203 102570517 -99757830 - MER33 DNA MER1_type 0 324 5 1916 145 53 28 chr4 102571352 102571711 -99756636 + THE1C LTR MaLR 1 368 -7 8814 144 75 12 chr4 102571714 102573199 -99755148 + THE1C-int LTR MaLR 3 1580 0 1992 123 63 36 chr4 102573199 102573564 -99754783 + THE1C LTR MaLR 1 375 0 22 88 0 0 chr4 102573743 102573800 -99754547 + AT_rich Low_complexity Low_complexity 1 57 0 36 53 0 0 chr4 102573873 102573930 -99754417 + AT_rich Low_complexity Low_complexity 1 57 0 195 250 0 0 chr4 102574145 102574189 -99754158 - L2 LINE L2 0 3313 3270 23 0 0 0 chr4 102574984 102575007 -99753340 + AT_rich Low_complexity Low_complexity 1 23 0 418 356 66 61 chr4 102575106 102575547 -99752800 - L2 LINE L2 -1 3271 2829 29 28 0 0 chr4 102575753 102575789 -99752558 + AT_rich Low_complexity Low_complexity 1 36 0 342 67 0 0 chr4 102576219 102576264 -99752083 + (GGAGA)n Simple_repeat Simple_repeat 5 49 0 5864 169 174 97 chr4 102576720 102578350 -99749997 + MER52A LTR ERV1 1 1755 0 27 29 0 0 chr4 102578891 102578925 -99749422 + AT_rich Low_complexity Low_complexity 1 34 0 2778 31 0 0 chr4 102579040 102579357 -99748990 + AluYb8 SINE Alu 2 318 0 1059 232 38 33 chr4 102579788 102580010 -99748337 + L1M4 LINE L1 4730 4949 -1197 4193 162 22 22 chr4 102580010 102580795 -99747552 + LTR1 LTR ERV1 1 785 0 1059 232 38 33 chr4 102580795 102580951 -99747396 + L1M4 LINE L1 4949 5103 -1043 1749 150 127 60 chr4 102580951 102581352 -99746995 - MSTA LTR MaLR 0 428 1 1059 232 38 33 chr4 102581352 102581416 -99746931 + L1M4 LINE L1 5103 5306 -840 2287 84 13 10 chr4 102581422 102581732 -99746615 + AluY SINE Alu 1 311 0 926 88 0 88 chr4 102581852 102582012 -99746335 + MLT2A1 LTR ERVL 299 444 0 35448 73 14 2 chr4 102582015 102586589 -99741758 + HERVL-A1 LTR ERVL 2 4630 -1024 1186 92 0 18 chr4 102586589 102586753 -99741594 + MLT2A1 LTR ERVL 238 398 -46 193 146 42 0 chr4 102586791 102586839 -99741508 + (TA)n Simple_repeat Simple_repeat 1 50 0 402 73 0 0 chr4 102586839 102586894 -99741453 + MLT2A1 LTR ERVL 390 444 0 439 272 215 11 chr4 102587283 102587548 -99740799 + L2 LINE L2 2488 2806 -508 876 251 156 48 chr4 102587579 102588042 -99740305 - MLT1G1 LTR MaLR -8 587 75 381 228 124 23 chr4 102588080 102588246 -99740101 + L2 LINE L2 2824 2995 -318 446 348 56 30 chr4 102588961 102589231 -99739116 + L2 LINE L2 2482 2758 -556 245 200 109 0 chr4 102589872 102589927 -99738420 + L2 LINE L2 3253 3313 0 1044 281 53 8 chr4 102590105 102590504 -99737843 - L1M4 LINE L1 -2040 4106 3690 815 276 58 3 chr4 102590492 102590786 -99737561 - L1M4 LINE L1 -2122 4024 3715 * 567 284 63 29 chr4 102590789 102591219 -99737128 - L1MCc LINE L1 -4887 1536 1241 1752 155 158 13 chr4 102591219 102591593 -99736754 - MSTA LTR MaLR 0 428 1 567 284 63 29 chr4 102591593 102591712 -99736635 - L1MCc LINE L1 -5182 1241 1127 306 195 103 46 chr4 102592014 102592101 -99736246 + MARNA DNA Mariner 412 503 -83 493 272 218 0 chr4 102592130 102592277 -99736070 - MER5A DNA MER1_type -1 188 10 1206 253 96 71 chr4 102592329 102592851 -99735496 + MLT1F LTR MaLR 1 535 -7 1138 234 67 13 chr4 102592988 102593304 -99735043 + MLT1C LTR MaLR 135 467 0 294 344 60 13 chr4 102593306 102593457 -99734890 + MER5B DNA MER1_type 21 178 0 927 159 13 0 chr4 102595404 102595555 -99732792 + MER5A DNA MER1_type 1 153 -36 2028 131 7 0 chr4 102595557 102595862 -99732485 - AluSx SINE Alu -5 307 1 486 363 19 14 chr4 102595938 102596153 -99732194 - MIR SINE MIR -34 228 13 367 206 43 22 chr4 102596859 102596951 -99731396 + MER103 DNA DNA 71 164 -2 748 244 68 24 chr4 102597152 102597357 -99730990 + MIR SINE MIR 44 257 -5 3496 272 75 12 chr4 102599258 102600873 -99727474 - L1M4 LINE L1 -743 5403 3688 14253 189 24 12 chr4 102600883 102605436 -99722911 + L1PA15 LINE L1 1863 6519 -362 336 24 0 0 chr4 102605436 102605477 -99722870 + (CA)n Simple_repeat Simple_repeat 2 42 0 14253 189 24 12 chr4 102605477 102605773 -99722574 + L1PA15 LINE L1 6519 6810 -71 370 276 109 6 chr4 102605783 102605939 -99722408 + L1ME1 LINE L1 5876 6050 -114 25 31 0 0 chr4 102605977 102606009 -99722338 + AT_rich Low_complexity Low_complexity 1 32 0 452 218 78 7 chr4 102606120 102606262 -99722085 + MER104 DNA Tc2 29 180 0 26 30 0 0 chr4 102606484 102606517 -99721830 + AT_rich Low_complexity Low_complexity 1 33 0 550 250 203 0 chr4 102606866 102607058 -99721289 - MIR SINE MIR -26 236 6 518 293 69 8 chr4 102607191 102607427 -99720920 - MLT1J1 LTR MaLR -138 308 59 264 149 0 21 chr4 102607434 102607481 -99720866 - LTR40b LTR ERVL -1 461 416 199 155 0 52 chr4 102607487 102607512 -99720835 + (TAGA)n Simple_repeat Simple_repeat 3 28 -29 2242 128 16 25 chr4 102607512 102607879 -99720468 + THE1B LTR MaLR 1 364 0 199 155 0 52 chr4 102607879 102607911 -99720436 + (TAGA)n Simple_repeat Simple_repeat 28 57 0 248 244 139 9 chr4 102607913 102608028 -99720319 - LTR40c LTR ERVL -62 403 274 640 285 38 62 chr4 102608292 102608632 -99719715 + LTR68 LTR ERV1 408 739 -1 236 337 76 54 chr4 102608777 102609053 -99719294 + L2 LINE L2 1799 2080 -1234 184 350 82 50 chr4 102610097 102610317 -99718030 - L2 LINE L2 -221 3051 2825 234 300 114 36 chr4 102610369 102610509 -99717838 - L2 LINE L2 -541 2773 2623 903 239 61 36 chr4 102610706 102611295 -99717052 + MER67C LTR ERV1 5 704 -6 701 286 57 8 chr4 102611421 102611700 -99716647 + MLT1G1 LTR MaLR 3 252 -303 363 253 10 46 chr4 102611796 102611945 -99716402 + MLT1G1 LTR MaLR 485 595 0 271 281 0 12 chr4 102611948 102612030 -99716317 + MLT1G1-int LTR MaLR 5 85 -1286 330 214 29 0 chr4 102613362 102613432 -99714915 + MLT1G1 LTR MaLR 20 91 -504 207 0 0 0 chr4 102614389 102614412 -99713935 + (TAAAA)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr4 102615568 102615590 -99712757 + AT_rich Low_complexity Low_complexity 1 22 0 3116 258 93 80 chr4 102617938 102619736 -99708611 - L2 LINE L2 0 3313 1502 1386 162 88 39 chr4 102620009 102620293 -99708054 + AluJb SINE Alu 1 298 -14 915 269 83 68 chr4 102620539 102621433 -99706914 + HAL1b LINE L1 28 934 -414 615 214 44 15 chr4 102621523 102621729 -99706618 - L1MC5 LINE L1 -755 7206 6995 487 234 58 32 chr4 102621731 102621885 -99706462 - MER63A DNA MER1_type -1 209 52 359 161 6 18 chr4 102622093 102622201 -99706146 - Alu SINE Alu -253 47 2 262 242 32 0 chr4 102622335 102622459 -99705888 + (TA)n Simple_repeat Simple_repeat 2 129 0 309 269 95 89 chr4 102622471 102622862 -99705485 - L1ME4a LINE L1 -153 5968 5576 186 323 95 32 chr4 102623354 102623512 -99704835 - MIR SINE MIR -25 237 70 21 0 0 0 chr4 102624379 102624400 -99703947 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr4 102624545 102624572 -99703775 + (A)n Simple_repeat Simple_repeat 1 27 0 366 280 40 40 chr4 102624899 102625074 -99703273 + L1MEc LINE L1 1589 1763 -4633 586 244 118 68 chr4 102625238 102625571 -99702776 + L1MEc LINE L1 2023 2366 -3849 659 195 41 0 chr4 102625571 102625694 -99702653 + FLAM_A SINE Alu 2 129 -4 586 244 118 68 chr4 102625694 102625981 -99702366 + L1MEc LINE L1 2366 2637 -3578 1483 260 118 60 chr4 102626018 102626671 -99701676 - MER21B LTR ERV1 -149 714 24 532 263 38 77 chr4 102626712 102627103 -99701244 + L1MEc LINE L1 2657 3032 -3183 24 0 0 0 chr4 102627248 102627272 -99701075 + AT_rich Low_complexity Low_complexity 1 24 0 522 136 12 0 chr4 102628475 102628556 -99699791 + Charlie3 DNA MER1_type 2631 2712 0 1359 113 5 21 chr4 102629074 102629268 -99699079 - MER1B DNA MER1_type 0 339 149 782 206 0 0 chr4 102629347 102629493 -99698854 + FRAM SINE Alu 1 146 -30 989 295 39 29 chr4 102629499 102630229 -99698118 + L1MEc LINE L1 2099 2789 -3426 199 404 15 44 chr4 102630470 102630740 -99697607 - L2 LINE L2 -457 2857 2596 286 292 32 78 chr4 102630830 102631111 -99697236 - L2 LINE L2 -899 2415 2148 294 299 21 0 chr4 102631111 102631208 -99697139 + GA-rich Low_complexity Low_complexity 3 101 0 4371 182 24 26 chr4 102631306 102632141 -99696206 - MER21B LTR ERV1 -15 848 16 430 320 34 17 chr4 102632182 102632357 -99695990 - MIR SINE MIR -47 215 38 202 401 49 7 chr4 102632528 102632670 -99695677 - L2 LINE L2 -1384 1930 1783 254 294 0 0 chr4 102634308 102634376 -99693971 + (TATG)n Simple_repeat Simple_repeat 3 70 0 23 0 0 0 chr4 102635044 102635067 -99693280 + AT_rich Low_complexity Low_complexity 1 23 0 1830 124 0 47 chr4 102635067 102635365 -99692982 + AluSx SINE Alu 1 284 -28 22 0 0 54 chr4 102635428 102635446 -99692901 + AT_rich Low_complexity Low_complexity 1 18 -17 2073 128 0 0 chr4 102635446 102635734 -99692613 - AluSx SINE Alu -24 288 1 22 0 0 54 chr4 102635734 102635752 -99692595 + AT_rich Low_complexity Low_complexity 18 35 0 594 180 36 0 chr4 102635766 102635877 -99692470 + FLAM_A SINE Alu 8 122 -20 186 404 53 9 chr4 102635877 102635991 -99692356 - L2 LINE L2 -21 3251 3133 24 67 0 0 chr4 102636154 102636199 -99692148 + AT_rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr4 102637638 102637662 -99690685 + AT_rich Low_complexity Low_complexity 1 24 0 279 265 20 20 chr4 102638288 102638386 -99689961 + GA-rich Low_complexity Low_complexity 2 99 0 757 274 32 5 chr4 102638407 102638597 -99689750 + MIR SINE MIR 15 209 -53 21 36 0 0 chr4 102639432 102639460 -99688887 + AT_rich Low_complexity Low_complexity 1 28 0 589 256 0 0 chr4 102640355 102640480 -99687867 + FLAM_A SINE Alu 1 125 -8 24 67 0 0 chr4 102640667 102640712 -99687635 + AT_rich Low_complexity Low_complexity 1 45 0 289 268 126 24 chr4 102641828 102641955 -99686392 + MIR SINE MIR 117 256 -6 219 304 0 43 chr4 102642309 102642378 -99685969 - L2 LINE L2 -18 3295 3230 37 39 0 0 chr4 102643692 102643743 -99684604 + AT_rich Low_complexity Low_complexity 1 51 0 686 306 61 40 chr4 102643839 102644316 -99684031 + L1MEc LINE L1 499 985 -5411 665 78 29 7 chr4 102644317 102644443 -99683904 - L1M2 LINE L1 -729 5443 5315 3366 83 19 2 chr4 102644974 102645477 -99682870 - L1P LINE L1 -756 5398 4877 293 218 0 0 chr4 102645471 102645526 -99682821 + L1PA8A LINE L1 5454 5508 -623 * 6859 61 1 3 chr4 102645526 102646925 -99681422 - L1PA7 LINE L1 0 6154 4753 1245 135 0 0 chr4 102648385 102648578 -99679769 + L1PBa LINE L1 4 196 -6667 11902 108 134 11 chr4 102648597 102650635 -99677712 + L1PBa LINE L1 636 2925 -3938 197 65 32 0 chr4 102652181 102652212 -99676135 + (TATATG)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr4 102653252 102653281 -99675066 + AT_rich Low_complexity Low_complexity 1 29 0 312 271 26 103 chr4 102653427 102653582 -99674765 - L2 LINE L2 -8 3264 3122 22 0 0 0 chr4 102653755 102653777 -99674570 + AT_rich Low_complexity Low_complexity 1 22 0 12346 54 80 5 chr4 102654606 102656312 -99672035 + L1PA3 LINE L1 1 1834 -4312 237 225 14 14 chr4 102656456 102656527 -99671820 + (CCCG)n Simple_repeat Simple_repeat 4 74 0 18885 46 6 0 chr4 102656693 102659825 -99668522 + L1PA3 LINE L1 3018 6155 0 305 159 0 14 chr4 102660140 102660209 -99668138 + (TAA)n Simple_repeat Simple_repeat 3 70 0 28 29 0 0 chr4 102661018 102661053 -99667294 + AT_rich Low_complexity Low_complexity 1 35 0 732 294 82 10 chr4 102661328 102661693 -99666654 + L1M4 LINE L1 4005 4399 -1747 183 42 0 0 chr4 102662505 102662529 -99665818 + (TAAAAA)n Simple_repeat Simple_repeat 6 29 0 186 250 83 0 chr4 102663283 102663343 -99665004 + L2 LINE L2 3249 3313 0 231 200 22 0 chr4 102663420 102663465 -99664882 - L2 LINE L2 0 3272 3227 249 242 192 50 chr4 102666256 102666376 -99661971 + MIR3 SINE MIR 47 183 -25 305 268 154 32 chr4 102667485 102667608 -99660739 + MIR SINE MIR 7 144 -118 272 230 40 40 chr4 102668656 102668730 -99659617 + L2 LINE L2 3239 3312 -1 3636 128 6 2 chr4 102670108 102670632 -99657715 - MER1A DNA MER1_type 0 527 2 4762 122 61 5 chr4 102670652 102671390 -99656957 - MER4E LTR ERV1 0 779 1 472 56 28 0 chr4 102673420 102673492 -99654855 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 180 111 0 0 chr4 102673795 102673822 -99654525 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 958 320 61 11 chr4 102674223 102674601 -99653746 - LTR16C LTR ERVL -19 472 76 22 0 0 0 chr4 102674785 102674807 -99653540 + AT_rich Low_complexity Low_complexity 1 22 0 303 314 89 0 chr4 102674819 102674943 -99653404 + L1ME4a LINE L1 5504 5638 -483 499 282 49 75 chr4 102674943 102675209 -99653138 + L2 LINE L2 3051 3309 -4 404 274 114 8 chr4 102675324 102675569 -99652778 + L1ME4a LINE L1 5798 6068 -53 3089 232 63 28 chr4 102676539 102677484 -99650863 + Zaphod DNA AcHobo 2 980 -3051 491 117 19 10 chr4 102677497 102677600 -99650747 + Zaphod DNA AcHobo 3597 3700 -331 1164 205 91 17 chr4 102677727 102678025 -99650322 + Zaphod DNA AcHobo 3712 4031 0 580 199 38 0 chr4 102679476 102679607 -99648740 + Charlie1 DNA MER1_type 2610 2745 -16 2430 63 7 0 chr4 102680465 102680768 -99647579 - AluY SINE Alu -6 305 1 711 287 10 5 chr4 102681125 102681320 -99647027 - MIR SINE MIR -10 252 57 330 271 66 16 chr4 102681744 102681866 -99646481 + MIR SINE MIR 60 187 -75 469 136 0 0 chr4 102682407 102682488 -99645859 - L1 LINE L1 -1801 4345 4265 3425 181 124 6 chr4 102682494 102683408 -99644939 + L1PA13 LINE L1 5132 6156 -7 23 0 0 0 chr4 102683408 102683431 -99644916 + AT_rich Low_complexity Low_complexity 1 23 0 246 333 42 0 chr4 102683580 102683700 -99644647 + MIR SINE MIR 138 262 0 22 35 0 0 chr4 102683803 102683832 -99644515 + AT_rich Low_complexity Low_complexity 1 29 0 713 289 29 20 chr4 102684574 102684820 -99643527 - MIR SINE MIR -13 249 2 193 200 100 57 chr4 102684856 102684926 -99643421 - MIR SINE MIR -94 168 96 7807 187 115 16 chr4 102685197 102686793 -99641554 - MER52A LTR ERV1 0 1755 1 385 345 108 59 chr4 102687103 102687648 -99640699 - L1M2 LINE L1 -5519 1330 759 6945 39 0 1 chr4 102687648 102688490 -99639857 + L1PA3 LINE L1 5312 6152 -3 30 0 0 0 chr4 102688506 102688536 -99639811 + AT_rich Low_complexity Low_complexity 1 30 0 460 301 96 75 chr4 102689220 102689596 -99638751 - MLT1J LTR MaLR -9 502 119 21 0 0 0 chr4 102690305 102690326 -99638021 + AT_rich Low_complexity Low_complexity 1 21 0 522 335 16 16 chr4 102690331 102690525 -99637822 - MIR3 SINE MIR -12 196 3 357 82 0 0 chr4 102690532 102690581 -99637766 + (TTCC)n Simple_repeat Simple_repeat 1 49 0 292 109 18 67 chr4 102690990 102691155 -99637192 + (TA)n Simple_repeat Simple_repeat 2 158 0 300 202 24 48 chr4 102691161 102691245 -99637102 - L1MC4 LINE L1 -1340 6702 6621 204 182 0 0 chr4 102691414 102691458 -99636889 + (CA)n Simple_repeat Simple_repeat 1 44 0 285 263 127 8 chr4 102691502 102691620 -99636727 - ERVL LTR ERVL -2629 3135 3004 213 367 0 75 chr4 102691760 102691815 -99636532 - MIR3 SINE MIR -3 205 147 2233 98 3 0 chr4 102691815 102692111 -99636236 + AluSp SINE Alu 1 297 -16 213 367 0 75 chr4 102692111 102692243 -99636104 - MIR3 SINE MIR -61 147 32 21 71 0 0 chr4 102693642 102693684 -99634663 + AT_rich Low_complexity Low_complexity 1 42 0 2341 99 0 13 chr4 102694642 102694954 -99633393 + AluSp SINE Alu 3 310 -3 311 312 0 0 chr4 102695092 102695169 -99633178 + (CAG)n Simple_repeat Simple_repeat 2 78 0 443 331 12 25 chr4 102695298 102695458 -99632889 - MIR SINE MIR -79 183 26 186 273 0 0 chr4 102695458 102695502 -99632845 + L2 LINE L2 3268 3311 -2 22 56 0 0 chr4 102697036 102697072 -99631275 + AT_rich Low_complexity Low_complexity 1 36 0 2756 10 3 0 chr4 102697294 102697602 -99630745 - AluYb8 SINE Alu -9 309 1 394 132 26 0 chr4 102698415 102698491 -99629856 + CT-rich Low_complexity Low_complexity 3 80 0 281 369 129 13 chr4 102698600 102698833 -99629514 + L2 LINE L2 2598 2857 -457 316 274 116 33 chr4 102699017 102699258 -99629089 - L1ME3 LINE L1 -239 5923 5663 260 363 10 0 chr4 102699889 102699991 -99628356 - MER5A DNA MER1_type -2 187 85 336 227 0 0 chr4 102700100 102700188 -99628159 + (TGG)n Simple_repeat Simple_repeat 1 88 0 441 306 208 7 chr4 102700249 102700458 -99627889 + MIR SINE MIR 14 261 -1 10216 99 19 0 chr4 102700742 102702218 -99626129 - L1P LINE L1 -1328 4818 3315 218 164 0 36 chr4 102702333 102702388 -99625959 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 536 254 45 108 chr4 102702435 102702643 -99625704 - MLT1J2 LTR MaLR -18 428 232 228 35 0 0 chr4 102702904 102702933 -99625414 + (TG)n Simple_repeat Simple_repeat 2 30 0 1312 216 90 29 chr4 102703031 102703374 -99624973 + L1M1 LINE L1 76 439 -7126 6655 105 16 16 chr4 102703374 102704419 -99623928 + L1MA2 LINE L1 5254 6298 -6 2283 93 3 0 chr4 102705285 102705586 -99622761 - AluY SINE Alu -9 302 1 21 0 0 0 chr4 102705676 102705697 -99622650 + AT_rich Low_complexity Low_complexity 1 21 0 1735 238 92 81 chr4 102705836 102706717 -99621630 - L1ME2 LINE L1 -9 6155 5265 821 218 98 19 chr4 102706745 102707011 -99621336 - L1ME2 LINE L1 -1054 5092 4806 2407 253 21 18 chr4 102707028 102707696 -99620651 - L1ME1 LINE L1 -4 6231 5562 711 314 54 54 chr4 102707751 102708376 -99619971 - L1ME1 LINE L1 -4614 1782 1155 663 269 6 18 chr4 102708376 102708543 -99619804 - FAM SINE Alu -8 167 3 711 314 54 54 chr4 102708543 102708605 -99619742 - L1ME1 LINE L1 -5240 1156 1095 1351 192 61 19 chr4 102708646 102708959 -99619388 + THE1C LTR MaLR 1 326 -49 20316 66 1 5 chr4 102709474 102715535 -99612812 + L1PA5 LINE L1 11 6147 -7 30 0 0 0 chr4 102715535 102715565 -99612782 + AT_rich Low_complexity Low_complexity 1 30 0 202 303 247 11 chr4 102716232 102716321 -99612026 - MER5A DNA MER1_type -28 161 52 315 293 0 0 chr4 102717472 102717547 -99610800 - MER5A DNA MER1_type -108 81 7 208 305 85 0 chr4 102717623 102717682 -99610665 - MER5A DNA MER1_type -83 106 43 31 0 0 0 chr4 102718078 102718109 -99610238 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr4 102718609 102718646 -99609701 + AT_rich Low_complexity Low_complexity 1 37 0 185 405 45 0 chr4 102719188 102719277 -99609070 - L2 LINE L2 -33 3239 3147 22 0 0 0 chr4 102719414 102719436 -99608911 + AT_rich Low_complexity Low_complexity 1 22 0 * 217 346 119 33 chr4 102719433 102719618 -99608729 - L2 LINE L2 -349 2965 2797 2450 67 0 0 chr4 102719618 102719915 -99608432 - AluY SINE Alu -14 297 1 217 346 119 33 chr4 102719915 102720241 -99608106 - L2 LINE L2 -517 2797 2410 2105 96 4 0 chr4 102720274 102720585 -99607762 + AluSp SINE Alu 1 312 0 372 291 34 0 chr4 102720833 102720950 -99607397 + L2 LINE L2 3176 3296 -17 319 304 67 59 chr4 102721783 102721997 -99606350 + MIR SINE MIR 39 252 -10 1165 240 108 35 chr4 102722187 102722621 -99605726 + MLT1C LTR MaLR 2 467 0 21 0 0 0 chr4 102722678 102722699 -99605648 + AT_rich Low_complexity Low_complexity 1 21 0 5095 66 38 3 chr4 102723280 102723945 -99604402 - LTR12 LTR ERV1 0 688 1 181 365 19 0 chr4 102724315 102724367 -99603980 + MIR SINE MIR 43 95 -113 342 349 48 58 chr4 102724578 102724870 -99603477 + L3 LINE CR1 780 1068 -509 517 250 77 13 chr4 102724872 102725028 -99603319 + MIR SINE MIR 87 252 -10 22 0 0 0 chr4 102725028 102725050 -99603297 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 102725330 102725360 -99602987 + AT_rich Low_complexity Low_complexity 1 30 0 794 266 74 16 chr4 102726799 102727230 -99601117 - L1M3d LINE L1 -5310 581 99 2505 164 86 34 chr4 102727522 102728078 -99600269 + MER34C LTR ERV1 1 585 0 239 205 0 0 chr4 102728354 102728393 -99599954 - MIR SINE MIR -6 256 218 2147 96 10 0 chr4 102729581 102729872 -99598475 + AluSc SINE Alu 1 294 -15 21 0 0 0 chr4 102730863 102730884 -99597463 + AT_rich Low_complexity Low_complexity 1 21 0 1300 255 128 26 chr4 102730998 102731535 -99596812 + MLT1E LTR MaLR 2 593 0 195 256 0 0 chr4 102732546 102732589 -99595758 - L2 LINE L2 -8 3305 3263 10494 27 5 2 chr4 102733579 102735170 -99593177 - L1P1 LINE L1 -448 5707 4115 21 57 0 0 chr4 102735699 102735734 -99592613 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr4 102735941 102735972 -99592375 + AT_rich Low_complexity Low_complexity 1 31 0 707 316 48 20 chr4 102737090 102737340 -99591007 - MIR SINE MIR 0 262 6 384 281 8 47 chr4 102737390 102737518 -99590829 - Charlie8 DNA MER1_type -2133 284 162 633 224 7 20 chr4 102737520 102737672 -99590675 - LTR40c LTR ERVL -13 452 303 4919 201 60 16 chr4 102738012 102740372 -99587975 + L1MC2 LINE L1 3878 6344 0 244 268 14 0 chr4 102740428 102740499 -99587848 + MER116 DNA Mariner 1 72 -8 567 244 86 117 chr4 102740628 102741091 -99587256 - HAL1 LINE L1 -1485 1022 574 21 0 0 0 chr4 102741335 102741356 -99586991 + AT_rich Low_complexity Low_complexity 1 21 0 2231 49 0 52 chr4 102741425 102741752 -99586595 - AluY SINE Alu 0 311 1 2146 113 0 50 chr4 102741823 102742142 -99586205 - AluSx SINE Alu -9 303 1 23 0 0 0 chr4 102742272 102742295 -99586052 + AT_rich Low_complexity Low_complexity 1 23 0 1782 91 0 4 chr4 102742868 102743119 -99585228 - AluY SINE Alu 0 300 51 24 0 0 0 chr4 102743329 102743353 -99584994 + AT_rich Low_complexity Low_complexity 1 24 0 337 280 0 0 chr4 102744075 102744150 -99584197 + MER5A DNA MER1_type 7 81 -108 202 303 247 11 chr4 102745301 102745390 -99582957 + MER5A DNA MER1_type 52 161 -28 30 0 0 0 chr4 102746057 102746087 -99582260 + AT_rich Low_complexity Low_complexity 1 30 0 42671 52 2 2 chr4 102746087 102752225 -99576122 - L1PA5 LINE L1 -7 6147 9 3879 35 0 0 chr4 102752226 102752686 -99575661 + L1PA3 LINE L1 5693 6152 -3 303 28 0 0 chr4 102752833 102752869 -99575478 + (CA)n Simple_repeat Simple_repeat 2 37 0 3781 242 73 121 chr4 102752890 102753066 -99575281 + L1MC4a LINE L1 5420 5603 -2205 231 103 0 0 chr4 102753066 102753105 -99575242 + (TA)n Simple_repeat Simple_repeat 2 40 0 3781 242 73 121 chr4 102753105 102754578 -99573769 + L1MC4a LINE L1 5603 6919 -889 3438 151 46 2 chr4 102754578 102755186 -99573161 - MER41B LTR ERV1 0 635 1 3781 242 73 121 chr4 102755186 102755943 -99572404 + L1MC4a LINE L1 6919 7711 -97 615 196 105 7 chr4 102756014 102756157 -99572190 + MER34B LTR ERV1 1 157 -408 2270 147 12 37 chr4 102756184 102756591 -99571756 + MER34B LTR ERV1 120 516 -49 41 21 0 0 chr4 102756743 102756791 -99571556 + AT_rich Low_complexity Low_complexity 1 48 0 2808 141 25 9 chr4 102756925 102757512 -99570835 + MER4E LTR ERV1 3 766 0 21 0 0 0 chr4 102758510 102758531 -99569816 + AT_rich Low_complexity Low_complexity 1 21 0 37 76 0 0 chr4 102759149 102759228 -99569119 + AT_rich Low_complexity Low_complexity 1 79 0 1975 81 0 0 chr4 102759426 102759685 -99568662 + PABL_B LTR ERV1 1 259 -408 470 224 10 10 chr4 102759670 102759768 -99568579 - MLT1D LTR MaLR -407 98 1 * 1255 227 163 23 chr4 102759901 102760473 -99567874 - MER39 LTR ERV1 0 681 4 8286 198 30 5 chr4 102760546 102763392 -99564955 + L1PA16 LINE L1 3251 6163 -3 1208 165 0 14 chr4 102763735 102763947 -99564400 - AluSg/x SINE Alu 0 312 104 935 267 19 31 chr4 102763984 102764242 -99564105 + MER21B LTR ERV1 531 785 -78 24 77 0 0 chr4 102765932 102765984 -99562363 + AT_rich Low_complexity Low_complexity 1 52 0 255 122 0 0 chr4 102766164 102766213 -99562134 + (TC)n Simple_repeat Simple_repeat 1 49 0 566 233 176 0 chr4 102766718 102766894 -99561453 - MER3 DNA MER1_type 0 209 3 290 267 67 57 chr4 102766908 102767013 -99561334 - MIR SINE MIR -145 117 12 22 80 0 0 chr4 102767653 102767703 -99560644 + AT_rich Low_complexity Low_complexity 1 50 0 5599 233 18 6 chr4 102769422 102771073 -99557274 + L1 LINE L1 2232 3892 -2254 3372 243 64 30 chr4 102771085 102772780 -99555567 + L1MDb LINE L1 328 2031 -4375 180 260 20 0 chr4 102772928 102772978 -99555369 + L2 LINE L2 3263 3313 0 737 154 9 0 chr4 102773901 102774011 -99554336 + AluSq/x SINE Alu 8 118 -194 496 330 83 18 chr4 102774169 102774634 -99553713 + L1MC/D LINE L1 5265 5755 -514 446 326 128 5 chr4 102774648 102774866 -99553481 - MIR SINE MIR 0 262 18 29 28 0 0 chr4 102775175 102775211 -99553136 + AT_rich Low_complexity Low_complexity 1 36 0 637 234 8 0 chr4 102775345 102775469 -99552878 - MER58A DNA MER1_type 0 224 100 616 171 43 7 chr4 102775530 102775670 -99552677 + Tigger3(Golem) DNA MER2_type 2697 2841 -188 731 192 186 23 chr4 102775770 102775947 -99552400 + Tigger3(Golem) DNA MER2_type 2825 3030 0 278 329 0 0 chr4 102775947 102776014 -99552333 - MER58A DNA MER1_type -40 67 1 2470 151 77 2 chr4 102776126 102776542 -99551805 - LTR47A LTR ERVL 0 452 6 408 55 0 0 chr4 102776542 102776597 -99551750 + (CA)n Simple_repeat Simple_repeat 2 56 0 31 44 0 0 chr4 102777148 102777193 -99551154 + AT_rich Low_complexity Low_complexity 1 45 0 24 85 0 0 chr4 102778047 102778106 -99550241 + AT_rich Low_complexity Low_complexity 1 59 0 15356 219 35 29 chr4 102778461 102780766 -99547581 + L1PA15 LINE L1 1 2291 -4525 6316 34 4 3 chr4 102780766 102781532 -99546815 + L1PA5 LINE L1 5388 6154 0 15356 219 35 29 chr4 102781532 102785464 -99542883 + L1PA15 LINE L1 2291 6413 -403 2339 87 0 3 chr4 102785464 102785775 -99542572 + AluY SINE Alu 1 310 -1 15356 219 35 29 chr4 102785775 102786175 -99542172 + L1PA15 LINE L1 6413 6809 -7 196 309 73 36 chr4 102786200 102786310 -99542037 - L2 LINE L2 -1 3312 3199 198 71 0 0 chr4 102786588 102786616 -99541731 + (CA)n Simple_repeat Simple_repeat 1 28 0 321 278 70 79 chr4 102787026 102787267 -99541080 - HAL1 LINE L1 -1074 1433 1195 308 349 47 12 chr4 102787303 102787472 -99540875 - L1M4 LINE L1 -1091 5055 4881 427 132 0 0 chr4 102787481 102787549 -99540798 - L1 LINE L1 -1124 5022 4955 328 292 195 0 chr4 102787572 102787767 -99540580 - L1 LINE L1 -1299 4847 4615 289 172 0 16 chr4 102787973 102788037 -99540310 - L1 LINE L1 -1124 5022 4960 448 272 174 25 chr4 102788112 102788630 -99539717 - L1 LINE L1 -1370 4776 4182 500 333 6 45 chr4 102788796 102789132 -99539215 - L1 LINE L1 -1953 4193 3871 4693 165 23 30 chr4 102789388 102790419 -99537928 + L1MB2 LINE L1 5145 6169 -2 24 53 0 0 chr4 102791957 102791995 -99536352 + AT_rich Low_complexity Low_complexity 1 38 0 189 107 0 0 chr4 102793673 102793701 -99534646 + (TC)n Simple_repeat Simple_repeat 2 29 0 328 344 136 24 chr4 102795264 102795595 -99532752 + L1M4 LINE L1 870 1237 -5612 407 296 142 42 chr4 102795901 102796381 -99531966 + L1M4 LINE L1 5564 6091 -757 544 311 72 9 chr4 102796713 102796935 -99531412 - MLT1J2 LTR MaLR -214 236 1 36 23 0 0 chr4 102797093 102797136 -99531211 + AT_rich Low_complexity Low_complexity 1 43 0 2204 176 57 21 chr4 102797164 102797641 -99530706 - L1MD3 LINE L1 -2 7993 7500 1342 204 107 62 chr4 102797641 102797682 -99530665 - L1MC3 LINE L1 -601 7184 7146 471 78 0 0 chr4 102797682 102797746 -99530601 + (TG)n Simple_repeat Simple_repeat 2 65 0 1342 204 107 62 chr4 102797746 102798154 -99530193 - L1MC3 LINE L1 -639 7146 6715 7942 124 30 13 chr4 102798279 102799557 -99528790 - HSMAR2 DNA Mariner -2 1300 2 503 232 0 0 chr4 102799670 102799765 -99528582 - FLAM_A SINE Alu -20 122 28 1952 132 11 4 chr4 102799973 102800254 -99528093 + AluSx SINE Alu 12 294 -18 531 69 0 0 chr4 102800254 102800326 -99528021 + (TA)n Simple_repeat Simple_repeat 2 73 0 213 39 0 0 chr4 102801349 102801375 -99526972 + (TG)n Simple_repeat Simple_repeat 2 27 0 292 237 0 17 chr4 102801390 102801449 -99526898 + L2 LINE L2 3204 3261 -52 685 270 133 36 chr4 102802237 102802710 -99525637 + MLT1G1 LTR MaLR 5 534 -8 249 139 0 0 chr4 102803449 102803492 -99524855 + (TG)n Simple_repeat Simple_repeat 2 44 0 2431 77 0 3 chr4 102804037 102804348 -99523999 - AluY SINE Alu -1 310 1 269 390 125 0 chr4 102804354 102804490 -99523857 + L2 LINE L2 3116 3268 -4 13449 202 29 7 chr4 102804707 102807844 -99520503 + L1P4 LINE L1 2324 5519 -642 1733 120 18 7 chr4 102807863 102808137 -99520210 - L1PA10 LINE L1 -12 6156 5880 4194 107 20 2 chr4 102808237 102809226 -99519121 - L1PA10 LINE L1 -307 5861 4854 840 266 143 0 chr4 102809226 102809478 -99518869 + MLT1B LTR MaLR 100 387 -3 1760 124 14 22 chr4 102809641 102809916 -99518431 - AluSg SINE Alu -37 273 1 293 298 9 44 chr4 102809917 102810031 -99518316 + MLT1J1 LTR MaLR 34 143 -307 28 0 0 0 chr4 102810443 102810471 -99517876 + AT_rich Low_complexity Low_complexity 1 28 0 295 346 135 0 chr4 102810564 102810720 -99517627 + L2 LINE L2 2879 3055 -217 239 220 20 0 chr4 102810964 102811014 -99517333 + CT-rich Low_complexity Low_complexity 1 51 0 262 274 107 30 chr4 102811068 102811302 -99517045 - L1M4 LINE L1 -1712 4434 4183 26 0 0 0 chr4 102811653 102811679 -99516668 + AT_rich Low_complexity Low_complexity 1 26 0 1279 196 52 70 chr4 102812012 102812449 -99515898 - MLT2B1 LTR ERVL -1 413 1 235 308 231 11 chr4 102812889 102813071 -99515276 + HsTC2b DNA Tc2 1 222 -693 * 250 261 0 0 chr4 102813065 102813134 -99515213 + HsTC2b DNA Tc2 820 888 -30 233 245 0 0 chr4 102813907 102813960 -99514387 + L2 LINE L2 3258 3310 -3 268 214 0 18 chr4 102817186 102817242 -99511105 - L2 LINE L2 -2 3311 3257 221 83 28 0 chr4 102817270 102817306 -99511041 + (TAGG)n Simple_repeat Simple_repeat 3 39 0 289 341 101 6 chr4 102867588 102867767 -99460580 + L2 LINE L2 2778 2973 -341 390 154 0 0 chr4 102867787 102867865 -99460482 + (CA)n Simple_repeat Simple_repeat 1 78 0 312 386 76 4 chr4 102867891 102868155 -99460192 + L2 LINE L2 3015 3297 -16 439 309 48 6 chr4 102868169 102868337 -99460010 + L3 LINE CR1 698 872 -705 332 338 61 7 chr4 102868855 102869003 -99459344 + L3 LINE CR1 980 1135 -442 293 305 32 0 chr4 102869099 102869194 -99459153 + MLT1I LTR MaLR 59 156 -253 704 361 48 17 chr4 102869406 102869821 -99458526 + L3 LINE CR1 1114 1541 -36 28 0 0 0 chr4 102870509 102870537 -99457810 + AT_rich Low_complexity Low_complexity 1 28 0 2294 68 3 7 chr4 102871566 102871862 -99456485 + AluY SINE Alu 1 295 -16 3539 143 70 52 chr4 102871982 102872386 -99455961 - MER72 LTR ERV1 -22 700 278 1538 146 0 0 chr4 102872386 102872605 -99455742 - AluSg/x SINE Alu -15 297 79 3539 143 70 52 chr4 102872605 102872876 -99455471 - MER72 LTR ERV1 -444 278 13 234 295 200 0 chr4 102872903 102872998 -99455349 + MLT1I LTR MaLR 209 322 -227 217 302 8 23 chr4 102873332 102873461 -99454886 + (TA)n Simple_repeat Simple_repeat 1 127 0 1113 278 171 52 chr4 102873463 102873612 -99454735 - L2 LINE L2 -17 3296 3166 1978 142 0 0 chr4 102873612 102873915 -99454432 + AluSx SINE Alu 3 305 0 1113 278 171 52 chr4 102873915 102874704 -99453643 - L2 LINE L2 -147 3166 2232 340 283 96 42 chr4 102874897 102875137 -99453210 - LTR41 LTR ERVL -11 762 510 717 215 21 32 chr4 102875691 102875877 -99452470 - LTR41 LTR ERVL -585 188 5 1392 234 29 0 chr4 102876994 102877292 -99451055 - AluJo SINE Alu 0 306 1 21 36 0 0 chr4 102877400 102877428 -99450919 + AT_rich Low_complexity Low_complexity 1 28 0 609 242 0 0 chr4 102877549 102877669 -99450678 + FLAM_A SINE Alu 1 120 -13 288 0 0 0 chr4 102877675 102877707 -99450640 + (TG)n Simple_repeat Simple_repeat 2 33 0 945 44 0 0 chr4 102878966 102879080 -99449267 - L1PA5 LINE L1 -30 6124 6011 212 224 30 0 chr4 102879080 102879147 -99449200 + A-rich Low_complexity Low_complexity 2 70 0 372 343 28 9 chr4 102879149 102879257 -99449090 - L2 LINE L2 -14 3258 3149 1810 167 21 0 chr4 102879462 102879743 -99448604 - AluSx SINE Alu -25 287 1 620 233 12 37 chr4 102879925 102880088 -99448259 - MIR SINE MIR -89 173 15 40418 69 6 4 chr4 102881609 102887762 -99440585 + L1PA5 LINE L1 1 6154 0 25 0 0 0 chr4 102887901 102887926 -99440421 + AT_rich Low_complexity Low_complexity 1 25 0 339 143 0 0 chr4 102888514 102888563 -99439784 - THE1B LTR MaLR 0 364 316 205 73 24 24 chr4 102889342 102889383 -99438964 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 491 185 173 44 chr4 102889695 102889857 -99438490 - L1ME1 LINE L1 0 6164 5987 1160 269 72 42 chr4 102889858 102890159 -99438188 - L1M4 LINE L1 -1502 4644 4354 1864 205 46 68 chr4 102890159 102890721 -99437626 + MER44D DNA MER2_type 1 605 0 1160 269 72 42 chr4 102890721 102891614 -99436733 - L1M4 LINE L1 -1792 4354 3338 5503 102 11 2 chr4 102891614 102892418 -99435929 - L1MA3 LINE L1 0 6305 5495 1160 269 72 42 chr4 102892418 102892477 -99435870 - L1M4 LINE L1 -2808 3338 3282 286 291 190 13 chr4 102892731 102892889 -99435458 + MIR SINE MIR 2 187 -75 21 36 0 0 chr4 102892989 102893017 -99435330 + AT_rich Low_complexity Low_complexity 1 28 0 261 285 73 44 chr4 102893762 102893899 -99434448 + L2 LINE L2 3158 3298 -15 1955 227 38 49 chr4 102893984 102894613 -99433734 - MLT1E2 LTR MaLR 0 626 5 445 291 92 24 chr4 102895667 102895873 -99432474 + L1MEc LINE L1 1435 1654 -4742 1384 282 121 26 chr4 102895908 102896553 -99431794 + L2 LINE L2 2324 3051 -262 1898 117 35 7 chr4 102896553 102896836 -99431511 + AluSx SINE Alu 1 291 -21 1384 282 121 26 chr4 102896836 102897026 -99431321 + L2 LINE L2 3051 3222 -91 297 0 0 0 chr4 102897026 102897054 -99431293 + (CA)n Simple_repeat Simple_repeat 1 61 0 297 0 0 0 chr4 102897054 102897087 -99431260 + (CA)n Simple_repeat Simple_repeat 2 34 0 26 0 0 0 chr4 102897360 102897386 -99430961 + AT_rich Low_complexity Low_complexity 1 26 0 25 51 0 0 chr4 102897635 102897674 -99430673 + AT_rich Low_complexity Low_complexity 1 39 0 41173 66 4 1 chr4 102898882 102905014 -99423333 - L1PA5 LINE L1 -2 6152 2 589 271 125 49 chr4 102905643 102906966 -99421381 - L1MEc LINE L1 -3939 2457 1035 339 143 0 0 chr4 102908755 102908804 -99419543 + THE1B LTR MaLR 316 364 0 25 0 0 0 chr4 102909392 102909417 -99418930 + AT_rich Low_complexity Low_complexity 1 25 0 41252 65 5 1 chr4 102909556 102915689 -99412658 - L1PA5 LINE L1 0 6154 2 895 209 21 11 chr4 102916309 102916496 -99411851 - MER5A DNA MER1_type 0 189 1 2003 128 0 0 chr4 102916849 102917130 -99411217 - AluSq SINE Alu -32 281 1 410 236 34 54 chr4 102917767 102917915 -99410432 - MLT1J1 LTR MaLR -65 381 237 2141 116 0 3 chr4 102917916 102918200 -99410147 - AluSx SINE Alu -29 283 1 618 215 0 0 chr4 102918610 102918717 -99409630 + Tigger3(Golem) DNA MER2_type 1 107 -2922 * 3545 143 90 38 chr4 102918709 102919423 -99408924 + Tigger3(Golem) DNA MER2_type 2277 3027 -2 2096 102 3 17 chr4 102919577 102919870 -99408477 - AluSx SINE Alu -23 289 1 904 219 22 0 chr4 102919895 102920123 -99408224 - L1PA16 LINE L1 -760 5386 5154 * 4799 130 8 25 chr4 102920115 102920890 -99407457 + L1PA16 LINE L1 5401 6162 -4 213 39 0 0 chr4 102921091 102921117 -99407230 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 32 0 0 0 chr4 102921515 102921547 -99406800 + AT_rich Low_complexity Low_complexity 1 32 0 602 271 126 49 chr4 102921860 102923182 -99405165 + L1MEc LINE L1 1035 2457 -3939 313 279 224 9 chr4 102923210 102923429 -99404918 + L1MEc LINE L1 2424 2689 -3526 1877 257 78 31 chr4 102923681 102924269 -99404078 + MLT1E3 LTR MaLR 1 616 -8 2363 87 0 0 chr4 102924543 102924842 -99403505 + AluSc SINE Alu 1 299 -10 217 289 165 0 chr4 102924893 102924990 -99403357 - L2 LINE L2 -6 3266 3154 * 249 218 0 18 chr4 102924984 102925039 -99403308 + L2 LINE L2 3219 3272 0 23 33 0 0 chr4 102925814 102925844 -99402503 + AT_rich Low_complexity Low_complexity 1 30 0 1151 282 111 26 chr4 102926988 102927527 -99400820 + L2 LINE L2 2076 2660 -654 23 0 0 0 chr4 102927597 102927620 -99400727 + AT_rich Low_complexity Low_complexity 1 23 0 643 207 8 0 chr4 102927620 102927741 -99400606 + L1PA16 LINE L1 6022 6143 -23 245 263 0 0 chr4 102927759 102927816 -99400531 - MIR SINE MIR -6 256 200 428 172 75 0 chr4 102927818 102927911 -99400436 + L1MA8 LINE L1 6135 6234 -57 842 181 0 0 chr4 102927920 102928053 -99400294 + FLAM_A SINE Alu 1 133 0 26 74 0 0 chr4 102928060 102928114 -99400233 + AT_rich Low_complexity Low_complexity 1 54 0 219 302 36 94 chr4 102928114 102928306 -99400041 - MIR SINE MIR -56 206 26 1027 155 6 11 chr4 102928680 102928854 -99399493 - AluSg/x SINE Alu -20 292 120 3203 74 53 0 chr4 102928891 102929321 -99399026 + MLT2A2 LTR ERVL 1 453 0 1314 181 4 13 chr4 102929321 102929558 -99398789 + ERVL-B1 LTR ERVL 5135 5369 -395 195 129 0 0 chr4 102929567 102929598 -99398749 + (TG)n Simple_repeat Simple_repeat 1 31 0 1067 146 6 17 chr4 102929614 102929792 -99398555 - MER46A DNA MER2_type 0 236 61 603 223 0 29 chr4 102930204 102930343 -99398004 + FLAM_A SINE Alu 8 142 0 26 74 0 0 chr4 102930354 102930408 -99397939 + AT_rich Low_complexity Low_complexity 1 54 0 219 302 36 94 chr4 102930408 102930600 -99397747 - MIR SINE MIR -56 206 26 1272 143 0 0 chr4 102930958 102931147 -99397200 - AluSg/x SINE Alu -4 308 120 3203 74 53 0 chr4 102931183 102931613 -99396734 + MLT2A2 LTR ERVL 1 453 0 3021 172 48 17 chr4 102931613 102931906 -99396441 + ERVL-B1 LTR ERVL 5135 5417 -347 1360 147 4 41 chr4 102931906 102932151 -99396196 - MER46A DNA MER2_type 0 236 1 3021 172 48 17 chr4 102932151 102932461 -99395886 + ERVL-B1 LTR ERVL 5417 5757 -7 1170 169 13 42 chr4 102932461 102932518 -99395829 + MLT2B1 LTR ERVL 1 58 -462 5141 58 0 0 chr4 102932518 102933158 -99395189 - L1PA7 LINE L1 0 6154 5515 1170 169 13 42 chr4 102933158 102933336 -99395011 + MLT2B1 LTR ERVL 58 229 -291 539 249 0 11 chr4 102933340 102933521 -99394826 + CT-rich Low_complexity Low_complexity 2 180 0 188 191 48 0 chr4 102933539 102933623 -99394724 + (TA)n Simple_repeat Simple_repeat 2 89 0 365 133 0 0 chr4 102933625 102933685 -99394662 + MLT2B1 LTR ERVL 461 520 0 537 279 98 22 chr4 102933700 102933883 -99394464 + MIR SINE MIR 8 204 -58 28 29 0 0 chr4 102933885 102933920 -99394427 + AT_rich Low_complexity Low_complexity 1 35 0 366 372 47 9 chr4 102934266 102934481 -99393866 - L3 LINE CR1 -34 1543 1321 1853 171 12 15 chr4 102934865 102935204 -99393143 - MER44D DNA MER2_type -1 608 1 264 123 41 0 chr4 102935561 102935634 -99392713 + (TA)n Simple_repeat Simple_repeat 1 76 0 64 75 0 0 chr4 102936301 102936435 -99391912 + AT_rich Low_complexity Low_complexity 1 134 0 3684 155 6 49 chr4 102936536 102937212 -99391135 + Tigger1 DNA MER2_type 1 647 -1771 1477 198 98 12 chr4 102937212 102937550 -99390797 - MSTA LTR MaLR -2 426 60 8134 187 58 9 chr4 102937584 102939158 -99389189 - MSTA-int LTR MaLR 0 1651 1 1663 210 109 3 chr4 102939158 102939524 -99388823 - MSTA LTR MaLR 0 428 24 * 3946 141 25 6 chr4 102939506 102940159 -99388188 + Tigger1 DNA MER2_type 669 1333 -1085 1040 105 7 0 chr4 102940157 102940310 -99388037 + MER41B LTR ERV1 482 635 0 * 4047 130 21 11 chr4 102940310 102940939 -99387408 + MER41A-int LTR ERV1 1 635 -5311 2291 131 20 2 chr4 102941007 102941733 -99386614 + MER41A-int LTR ERV1 1104 2017 -3929 * 9768 133 20 31 chr4 102941729 102943874 -99384473 + MER41A-int LTR ERV1 2167 3844 -1171 2416 74 0 0 chr4 102943874 102944172 -99384175 - AluY SINE Alu -13 298 1 9768 133 20 31 chr4 102944172 102944724 -99383623 + MER41A-int LTR ERV1 3844 4401 -614 31521 108 12 55 chr4 102944734 102951151 -99377196 + L1PA7 LINE L1 12 6147 -7 1709 89 66 4 chr4 102951156 102951415 -99376932 + MER41A-int LTR ERV1 5211 5485 -461 1472 91 19 0 chr4 102951412 102951620 -99376727 + MER41A-int LTR ERV1 5729 5940 -6 * 2119 114 32 8 chr4 102951624 102952121 -99376226 + MER41A LTR ERV1 1 547 -88 6567 139 22 6 chr4 102952129 102953220 -99375127 + Tigger1 DNA MER2_type 1310 2417 -1 187 91 50 71 chr4 102953450 102953549 -99374798 + (TTAA)n Simple_repeat Simple_repeat 4 100 0 278 290 159 0 chr4 102953549 102953656 -99374691 + L2 LINE L2 3189 3312 -1 492 258 79 22 chr4 102953856 102954034 -99374313 - L1ME LINE L1 -465 5656 5469 24 32 0 0 chr4 102955107 102955138 -99373209 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr4 102956724 102956750 -99371597 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr4 102956801 102956830 -99371517 + AT_rich Low_complexity Low_complexity 1 29 0 1076 172 16 26 chr4 102957149 102957341 -99371006 + MER6B DNA MER2_type 1 190 -20 25 0 0 0 chr4 102958098 102958123 -99370224 + AT_rich Low_complexity Low_complexity 1 25 0 898 296 20 4 chr4 102958313 102958560 -99369787 + MIR SINE MIR 2 252 -10 1592 251 54 29 chr4 102961034 102961871 -99366476 - L1M4c LINE L1 -4709 1937 980 331 258 112 45 chr4 102961873 102962051 -99366296 - L1M4 LINE L1 -2751 3395 3206 314 258 76 50 chr4 102962097 102962295 -99366052 - L1M4 LINE L1 -3619 2527 2325 2365 83 3 0 chr4 102962986 102963286 -99365061 + AluSg SINE Alu 3 303 -7 21 57 0 0 chr4 102964019 102964054 -99364293 + AT_rich Low_complexity Low_complexity 1 35 0 232 316 46 59 chr4 102965108 102965260 -99363087 - MLT1J LTR MaLR -104 407 258 5582 26 0 0 chr4 102965270 102965928 -99362419 - L1PA2 LINE L1 -1124 5022 4365 * 6477 30 0 0 chr4 102965926 102966937 -99361410 + L1PA2 LINE L1 5008 6018 -137 279 0 0 0 chr4 102966939 102966970 -99361377 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 209 222 0 0 chr4 102966985 102967030 -99361317 + A-rich Low_complexity Low_complexity 1 45 0 376 271 50 55 chr4 102967367 102967548 -99360799 - MLT1J LTR MaLR -331 180 1 243 296 43 52 chr4 102967843 102967958 -99360389 + L2 LINE L2 3159 3272 0 2240 70 40 7 chr4 102969608 102969909 -99358438 - AluY SINE Alu 0 311 1 541 43 0 0 chr4 102970007 102970077 -99358270 + L1PA8 LINE L1 6097 6166 -6 1010 182 0 0 chr4 102970425 102970595 -99357752 - AluJ SINE Alu -12 300 131 691 179 0 0 chr4 102970638 102970755 -99357592 - AluJ SINE Alu -181 131 15 650 234 113 67 chr4 102970849 102971088 -99357259 + MIR SINE MIR 13 262 0 29 84 0 0 chr4 102971088 102971159 -99357188 + AT_rich Low_complexity Low_complexity 1 71 0 235 197 0 45 chr4 102971293 102971359 -99356988 + L1M4 LINE L1 2122 2184 -3962 4179 109 12 17 chr4 102971377 102972020 -99356327 - L1PA11 LINE L1 0 6174 5535 12768 157 14 2 chr4 102972024 102974310 -99354037 - L1PA11 LINE L1 -730 5444 3136 4239 138 7 0 chr4 102974319 102975042 -99353305 + L1M1 LINE L1 2112 2839 -4726 189 0 0 0 chr4 102975043 102975064 -99353283 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 5440 189 16 21 chr4 102975064 102976095 -99352252 - L1PB2 LINE L1 -11 6140 5105 2073 106 3 3 chr4 102976095 102976388 -99351959 - AluSg SINE Alu -1 309 17 5440 189 16 21 chr4 102976388 102977110 -99351237 - L1PB2 LINE L1 -1046 5105 4396 530 0 31 0 chr4 102977110 102977175 -99351172 + (TTTTA)n Simple_repeat Simple_repeat 4 70 0 5440 189 16 21 chr4 102977175 102977544 -99350803 - L1PB2 LINE L1 -1755 4396 4027 3302 126 13 16 chr4 102977549 102978280 -99350067 + L1MA3 LINE L1 5053 5778 -527 * 28971 48 4 7 chr4 102978278 102982241 -99346106 + L1PA5 LINE L1 1701 5652 -503 2002 58 4 0 chr4 102982241 102982497 -99345850 + L1PA5 LINE L1 5889 6146 -8 3156 124 21 13 chr4 102982513 102983046 -99345301 + L1MA3 LINE L1 5769 6305 0 581 285 53 40 chr4 102983810 102984202 -99344145 - L1MEd LINE L1 -4884 1426 990 366 306 101 5 chr4 102984237 102984446 -99343901 - MLT1J LTR MaLR -22 593 314 360 303 24 42 chr4 102984517 102984682 -99343665 - MLT1J LTR MaLR -349 162 1 1305 328 70 34 chr4 102984874 102985618 -99342729 - L1MEd LINE L1 -5346 773 3 189 309 91 45 chr4 102985934 102986044 -99342303 - MIR SINE MIR -111 151 37 22 0 0 0 chr4 102986136 102986158 -99342189 + AT_rich Low_complexity Low_complexity 1 22 0 228 222 139 14 chr4 102986532 102986604 -99341743 - MIR SINE MIR -105 103 23 829 309 80 50 chr4 102987120 102989284 -99339063 + L1M4 LINE L1 2286 4514 -1632 23 0 0 0 chr4 102989334 102989357 -99338990 + AT_rich Low_complexity Low_complexity 1 23 0 1399 232 133 88 chr4 102989385 102990071 -99338276 - L1MC4 LINE L1 -984 7058 6342 523 224 50 19 chr4 102990987 102991008 -99337339 - L1MA10 LINE L1 0 6334 6314 980 228 38 34 chr4 102991008 102991328 -99337019 - L1ME1 LINE L1 -14 6152 5832 739 208 68 18 chr4 102991347 102991652 -99336695 + MLT1A2 LTR MaLR 3 374 0 900 193 39 81 chr4 102991655 102991940 -99336407 - L1ME1 LINE L1 -340 5826 5554 22 35 0 0 chr4 102992138 102992167 -99336180 + AT_rich Low_complexity Low_complexity 1 29 0 227 255 21 0 chr4 102992243 102992290 -99336057 + L2 LINE L2 3194 3241 -31 27 49 0 0 chr4 102993305 102993346 -99335001 + AT_rich Low_complexity Low_complexity 1 41 0 1473 118 108 46 chr4 102993594 102993917 -99334430 - L1MA7 LINE L1 0 6291 5949 3492 167 27 15 chr4 102993924 102994026 -99334321 + L1MA7 LINE L1 5269 5368 -923 2104 147 36 25 chr4 102994026 102994386 -99333961 - THE1B LTR MaLR 0 364 1 11176 99 6 8 chr4 102994386 102995969 -99332378 - THE1B-int LTR MaLR 0 1580 1 2035 141 39 30 chr4 102995969 102996330 -99332017 - THE1B LTR MaLR 0 364 1 3492 167 27 15 chr4 102996330 102996891 -99331456 + L1MA7 LINE L1 5367 5942 -349 182 351 39 13 chr4 102997869 102997946 -99330401 - L3 LINE CR1 -37 1540 1462 * 313 308 0 19 chr4 102997930 102998037 -99330310 + MIR3 SINE MIR 98 202 -6 491 318 142 54 chr4 102998519 102999060 -99329287 + L1MCc LINE L1 11 599 -5824 701 230 65 68 chr4 102999278 102999587 -99328760 + L1MCc LINE L1 1036 1343 -5080 326 107 18 0 chr4 102999602 102999658 -99328689 + (CA)n Simple_repeat Simple_repeat 2 58 0 836 130 8 0 chr4 102999679 102999802 -99328545 + AluJ SINE Alu 1 124 -188 235 190 0 0 chr4 102999821 102999879 -99328468 - L1MC4 LINE L1 -1339 6703 6646 949 186 0 29 chr4 102999879 103000051 -99328296 + AluJ SINE Alu 132 298 -14 883 242 108 50 chr4 103000054 103000575 -99327772 + L1MCc LINE L1 1372 1922 -5019 1740 187 18 45 chr4 103000890 103001291 -99327056 + MLT1B LTR MaLR 1 390 0 973 262 17 4 chr4 103002231 103002464 -99325883 - MER8 DNA MER2_type -3 236 1 504 322 37 34 chr4 103002735 103003145 -99325202 + HAL1b LINE L1 204 614 -734 2239 163 38 12 chr4 103003372 103003789 -99324558 + MSTA LTR MaLR 1 428 0 8623 186 29 3 chr4 103003789 103005398 -99322949 + MSTA-int LTR MaLR 1 1650 -1 1984 158 118 5 chr4 103005409 103005790 -99322557 + MSTA LTR MaLR 5 428 0 3415 176 33 30 chr4 103005793 103006522 -99321825 + L1MA8 LINE L1 5468 6198 -93 31 0 0 0 chr4 103006988 103007019 -99321328 + AT_rich Low_complexity Low_complexity 1 31 0 38 0 0 0 chr4 103007096 103007134 -99321213 + AT_rich Low_complexity Low_complexity 1 38 0 1355 154 29 11 chr4 103007197 103007469 -99320878 + L1MA4 LINE L1 6013 6289 -11 21 57 0 0 chr4 103007528 103007563 -99320784 + AT_rich Low_complexity Low_complexity 1 35 0 550 294 36 24 chr4 103007565 103007813 -99320534 + HAL1 LINE L1 2250 2500 -7 231 369 29 29 chr4 103008766 103008869 -99319478 + MIR SINE MIR 2 104 -158 595 262 106 18 chr4 103009249 103009524 -99318823 + LTR43 LTR ERV1 180 478 -124 668 249 23 23 chr4 103010036 103010213 -99318134 - MLT1J LTR MaLR -38 473 297 271 297 217 14 chr4 103010353 103010491 -99317856 - MLT1J LTR MaLR -339 172 7 380 266 73 68 chr4 103012435 103012612 -99315735 - MER5B DNA MER1_type 0 178 1 27 29 0 0 chr4 103013340 103013374 -99314973 + AT_rich Low_complexity Low_complexity 1 34 0 317 283 7 29 chr4 103013464 103013545 -99314802 + L1ME4a LINE L1 5975 6053 -68 6620 87 8 0 chr4 103013545 103014923 -99313424 - L1PA13 LINE L1 0 6163 4778 317 283 7 29 chr4 103014923 103014979 -99313368 + L1ME4a LINE L1 6053 6109 -12 21 0 0 0 chr4 103015400 103015421 -99312926 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr4 103015469 103015518 -99312829 + AT_rich Low_complexity Low_complexity 1 49 0 6053 145 5 4 chr4 103015579 103017578 -99310769 + L1PA14 LINE L1 4104 6152 -9 1814 182 31 13 chr4 103017822 103020038 -99308309 + L1MA9 LINE L1 3980 6312 0 16533 55 63 5 chr4 103020244 103022449 -99305898 + L1PA3 LINE L1 1 2335 -3811 20019 35 5 0 chr4 103022449 103025656 -99302691 + L1PA3 LINE L1 2926 6137 -18 7657 16 5 0 chr4 103024776 103025656 -99302691 + L1PA3 LINE L1 5254 6171 0 307 0 0 0 chr4 103025656 103025690 -99302657 + (TAA)n Simple_repeat Simple_repeat 3 180 0 225 0 0 0 chr4 103025751 103025776 -99302571 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 1024 302 115 16 chr4 103025802 103026596 -99301751 + L1M4 LINE L1 3286 4157 -1989 230 183 17 33 chr4 103027044 103027104 -99301243 + L1MDb LINE L1 776 834 -5575 272 281 56 0 chr4 103027123 103027212 -99301135 + L1MDb LINE L1 757 850 -5559 523 289 119 58 chr4 103027377 103027580 -99300767 + L2 LINE L2 2805 2994 -319 1898 117 35 7 chr4 103027580 103027863 -99300484 + AluSx SINE Alu 1 291 -21 523 289 119 58 chr4 103027863 103028053 -99300294 + L2 LINE L2 2994 3222 -91 259 250 17 26 chr4 103028053 103028087 -99300260 + (TA)n Simple_repeat Simple_repeat 1 34 -81 189 0 0 0 chr4 103028087 103028108 -99300239 + (CA)n Simple_repeat Simple_repeat 2 22 0 259 250 17 26 chr4 103028108 103028189 -99300158 + (TA)n Simple_repeat Simple_repeat 34 115 0 26 0 0 0 chr4 103028381 103028407 -99299940 + AT_rich Low_complexity Low_complexity 1 26 0 25 51 0 0 chr4 103028656 103028695 -99299652 + AT_rich Low_complexity Low_complexity 1 39 0 40361 70 5 4 chr4 103029903 103036054 -99292293 - L1PA5 LINE L1 -2 6152 1 620 233 12 37 chr4 103037573 103037736 -99290611 + MIR SINE MIR 15 173 -89 1795 171 21 0 chr4 103037918 103038199 -99290148 + AluSx SINE Alu 1 287 -25 374 343 28 9 chr4 103038404 103038512 -99289835 + L2 LINE L2 3149 3258 -14 201 139 47 0 chr4 103038518 103038561 -99289786 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 945 44 0 0 chr4 103038581 103038695 -99289652 + L1PA5 LINE L1 6011 6124 -30 324 0 0 0 chr4 103039953 103039989 -99288358 + (CA)n Simple_repeat Simple_repeat 2 37 0 609 242 0 0 chr4 103039995 103040115 -99288232 - FLAM_A SINE Alu -13 120 1 21 36 0 0 chr4 103040236 103040264 -99288083 + AT_rich Low_complexity Low_complexity 1 28 0 1393 234 29 0 chr4 103040372 103040670 -99287677 + AluJo SINE Alu 1 306 0 717 215 21 32 chr4 103041787 103041973 -99286374 + LTR41 LTR ERVL 5 188 -585 334 291 87 37 chr4 103042527 103042768 -99285579 + LTR41 LTR ERVL 510 762 -11 1086 279 171 52 chr4 103042961 103043750 -99284597 + L2 LINE L2 2232 3166 -147 1977 142 0 0 chr4 103043750 103044053 -99284294 - AluSx SINE Alu 0 305 3 1086 279 171 52 chr4 103044053 103044202 -99284145 + L2 LINE L2 3166 3296 -17 217 302 8 23 chr4 103044204 103044333 -99284014 + (TA)n Simple_repeat Simple_repeat 2 128 0 234 295 200 0 chr4 103044667 103044762 -99283585 - MLT1I LTR MaLR -227 322 209 3539 143 70 52 chr4 103044789 103045060 -99283287 + MER72 LTR ERV1 13 278 -444 1538 146 0 0 chr4 103045060 103045279 -99283068 + AluSg/x SINE Alu 79 297 -15 3539 143 70 52 chr4 103045279 103045683 -99282664 + MER72 LTR ERV1 278 700 -22 2368 68 3 3 chr4 103045803 103046098 -99282249 - AluY SINE Alu -16 295 1 28 0 0 0 chr4 103047127 103047155 -99281192 + AT_rich Low_complexity Low_complexity 1 28 0 693 361 48 17 chr4 103047843 103048258 -99280089 - L3 LINE CR1 -36 1541 1114 291 305 32 0 chr4 103048470 103048565 -99279782 - MLT1I LTR MaLR -253 156 59 329 338 61 7 chr4 103048661 103048809 -99279538 - L3 LINE CR1 -442 1135 980 405 316 48 6 chr4 103049327 103049495 -99278852 - L3 LINE CR1 -705 872 698 306 386 76 4 chr4 103049509 103049773 -99278574 - L2 LINE L2 -16 3297 3015 426 146 0 0 chr4 103049799 103049881 -99278466 + (TG)n Simple_repeat Simple_repeat 1 82 0 291 341 101 6 chr4 103049901 103050080 -99278267 - L2 LINE L2 -341 2973 2778 359 172 0 0 chr4 103050925 103050989 -99277358 + MLT1D LTR MaLR 435 498 -7 1940 195 42 40 chr4 103052307 103052382 -99275965 + MLT1D LTR MaLR 1 74 -431 2002 196 39 30 chr4 103052382 103052845 -99275502 - MLT1C LTR MaLR 0 467 1 1940 195 42 40 chr4 103052845 103053277 -99275070 + MLT1D LTR MaLR 74 500 -5 192 398 0 31 chr4 103053413 103053541 -99274806 - L3 LINE CR1 -1 1576 1453 291 341 31 31 chr4 103053639 103053768 -99274579 - L2 LINE L2 -1 3271 3143 400 343 81 6 chr4 103053957 103054129 -99274218 - L2 LINE L2 -523 2791 2607 432 268 32 37 chr4 103054660 103054851 -99273496 + MER92C LTR ERV1 1 189 -365 309 132 19 0 chr4 103054915 103054968 -99273379 + MER92C LTR ERV1 500 553 -1 3867 65 0 8 chr4 103055187 103055696 -99272651 - L1PA8 LINE L1 -6 6166 5662 21 0 0 0 chr4 103055976 103055997 -99272350 + AT_rich Low_complexity Low_complexity 1 21 0 2184 87 0 14 chr4 103057362 103057687 -99270660 + AluSq SINE Alu 1 321 0 251 200 0 15 chr4 103057877 103057942 -99270405 + GA-rich Low_complexity Low_complexity 2 65 0 337 306 0 27 chr4 103059065 103059176 -99269171 + MLT1E LTR MaLR 1 92 -501 624 289 103 0 chr4 103059176 103059380 -99268967 - L2 LINE L2 -1848 1466 1242 1273 158 40 6 chr4 103059446 103059879 -99268468 - LTR54 LTR ERV1 0 510 3 3059 216 159 18 chr4 103059879 103060105 -99268242 + L1MB2 LINE L1 5005 5198 -973 186 71 0 0 chr4 103060105 103060133 -99268214 + (CAA)n Simple_repeat Simple_repeat 1 28 0 3059 216 159 18 chr4 103060133 103060932 -99267415 + L1MB2 LINE L1 5198 6169 -2 339 309 0 0 chr4 103060932 103061013 -99267334 - L2 LINE L2 -2063 1251 1171 186 377 59 18 chr4 103061144 103061364 -99266983 - L2 LINE L2 -222 3050 2822 494 254 9 0 chr4 103061554 103061664 -99266683 + MIR3 SINE MIR 44 154 -54 393 294 110 48 chr4 103061672 103061982 -99266365 + L1ME4a LINE L1 5790 6118 -3 280 247 14 14 chr4 103062487 103062560 -99265787 - MER94 DNA DNA -61 73 1 1357 252 19 13 chr4 103062592 103062909 -99265438 - MER77 LTR ERV1 0 605 287 400 154 0 0 chr4 103062917 103062982 -99265365 - MER77 LTR ERV1 -538 67 3 190 308 13 51 chr4 103063090 103063168 -99265179 - MIR SINE MIR -22 240 166 204 239 0 0 chr4 103063205 103063251 -99265096 + T-rich Low_complexity Low_complexity 4 49 0 401 270 87 0 chr4 103063529 103063655 -99264692 + L1MEd LINE L1 11 147 -5972 1083 303 77 20 chr4 103063745 103064237 -99264110 + L1MEd LINE L1 304 823 -5296 1313 239 23 29 chr4 103065085 103065428 -99262919 + MER58B DNA MER1_type 1 341 0 401 326 64 4 chr4 103065811 103066044 -99262303 - MLT1L LTR MaLR -149 466 220 269 335 76 15 chr4 103066577 103066774 -99261573 + MIR SINE MIR 8 216 -46 281 247 0 79 chr4 103067036 103067125 -99261222 - L2 LINE L2 0 3313 3232 212 345 59 25 chr4 103067538 103067657 -99260690 + L3 LINE CR1 1443 1565 -12 204 67 0 0 chr4 103068713 103068743 -99259604 + (T)n Simple_repeat Simple_repeat 1 30 0 1414 170 42 10 chr4 103069120 103069408 -99258939 + MER44D DNA MER2_type 1 567 -42 3368 196 27 48 chr4 103069508 103070488 -99257859 - MER52A LTR ERV1 -635 1120 1 435 306 208 7 chr4 103070820 103071029 -99257318 - MIR SINE MIR -1 261 14 336 227 0 0 chr4 103071091 103071179 -99257168 + (CCA)n Simple_repeat Simple_repeat 1 88 0 258 363 10 0 chr4 103071288 103071390 -99256957 + MER5A DNA MER1_type 85 187 -2 297 274 116 33 chr4 103072021 103072262 -99256085 + L1ME3 LINE L1 5663 5923 -239 275 369 129 13 chr4 103072446 103072679 -99255668 - L2 LINE L2 -457 2857 2598 394 132 26 0 chr4 103072788 103072864 -99255483 + GA-rich Low_complexity Low_complexity 3 80 0 2844 10 0 0 chr4 103073677 103073986 -99254361 + AluYb8 SINE Alu 1 309 -9 22 56 0 0 chr4 103074208 103074244 -99254103 + AT_rich Low_complexity Low_complexity 1 36 0 185 273 0 0 chr4 103075778 103075822 -99252525 - L2 LINE L2 -2 3311 3268 446 331 12 25 chr4 103075822 103075982 -99252365 + MIR SINE MIR 26 183 -79 311 312 0 0 chr4 103076111 103076188 -99252159 + (CTG)n Simple_repeat Simple_repeat 2 78 0 2367 99 0 13 chr4 103076326 103076638 -99251709 - AluSp SINE Alu -3 310 3 21 71 0 0 chr4 103077596 103077638 -99250709 + AT_rich Low_complexity Low_complexity 1 42 0 200 367 0 75 chr4 103079037 103079169 -99249178 + MIR3 SINE MIR 32 147 -61 2270 98 3 0 chr4 103079169 103079465 -99248882 - AluSp SINE Alu -16 297 1 200 367 0 75 chr4 103079465 103079520 -99248827 + MIR3 SINE MIR 147 205 -3 286 263 127 8 chr4 103079660 103079778 -99248569 + ERVL LTR ERVL 3004 3135 -2629 204 182 0 0 chr4 103079822 103079866 -99248481 + (TG)n Simple_repeat Simple_repeat 1 44 0 200 135 0 27 chr4 103080035 103080072 -99248275 + (TA)n Simple_repeat Simple_repeat 1 36 0 1112 129 6 6 chr4 103080177 103080355 -99247992 + Tigger7 DNA MER2_type 2311 2488 -3 28 29 0 0 chr4 103080391 103080426 -99247921 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr4 103080632 103080674 -99247673 + AT_rich Low_complexity Low_complexity 1 42 0 2522 191 70 10 chr4 103081868 103082332 -99246015 - L1MA9 LINE L1 -38 6274 5766 441 0 0 0 chr4 103082332 103082381 -99245966 + (CA)n Simple_repeat Simple_repeat 2 50 0 2522 191 70 10 chr4 103082381 103082504 -99245843 - L1MA9 LINE L1 -546 5766 5652 22 0 0 0 chr4 103082504 103082526 -99245821 + AT_rich Low_complexity Low_complexity 1 22 0 10053 44 0 17 chr4 103082526 103084586 -99243761 - L1PA3 LINE L1 -3 6152 4115 21 57 0 0 chr4 103085115 103085150 -99243197 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr4 103085357 103085388 -99242959 + AT_rich Low_complexity Low_complexity 1 31 0 249 287 20 10 chr4 103086607 103086708 -99241639 - L1ME LINE L1 -384 5737 5636 252 330 22 11 chr4 103086726 103086817 -99241530 + L2 LINE L2 1525 1616 -1698 1379 311 78 49 chr4 103087525 103087692 -99240655 + L2 LINE L2 1220 1381 -1933 1795 171 14 7 chr4 103087692 103087985 -99240362 - AluJb SINE Alu -17 295 1 1379 311 78 49 chr4 103087985 103088614 -99239733 + L2 LINE L2 1381 2039 -1275 1486 172 109 7 chr4 103088615 103088918 -99239429 - MLT1A1 LTR MaLR 0 365 32 34 24 0 0 chr4 103089468 103089509 -99238838 + AT_rich Low_complexity Low_complexity 1 41 0 320 159 0 0 chr4 103089549 103089593 -99238754 + Alu SINE Alu 1 44 -255 1978 151 0 3 chr4 103089600 103089898 -99238449 + AluSx SINE Alu 1 297 -15 212 200 0 0 chr4 103089998 103090038 -99238309 - L2 LINE L2 -309 2963 2924 24 32 0 0 chr4 103090247 103090278 -99238069 + AT_rich Low_complexity Low_complexity 1 31 0 3018 82 2 27 chr4 103090997 103091411 -99236936 + MLT2A1 LTR ERVL 1 404 -40 267 103 0 0 chr4 103091413 103091452 -99236895 + (CA)n Simple_repeat Simple_repeat 2 40 0 384 67 47 53 chr4 103091466 103091616 -99236731 + (TA)n Simple_repeat Simple_repeat 1 149 0 445 54 16 92 chr4 103091633 103091817 -99236530 + (TA)n Simple_repeat Simple_repeat 1 170 0 410 56 0 0 chr4 103091822 103091876 -99236471 + MLT2A1 LTR ERVL 400 453 0 40203 81 9 2 chr4 103091876 103097099 -99231248 + HERVL-A1 LTR ERVL 1 5262 -392 3136 134 14 10 chr4 103097102 103097611 -99230736 - MER9 LTR ERVK 0 511 1 2535 126 10 6 chr4 103097614 103098350 -99229997 - HERVK9 LTR ERVK -2 8032 5273 12319 172 70 19 chr4 103098358 103100379 -99227968 - L1P5 LINE L1 -670 6197 4281 2451 85 0 16 chr4 103100379 103100695 -99227652 - AluY SINE Alu 0 311 1 12319 172 70 19 chr4 103100695 103100994 -99227353 - L1P5 LINE L1 -2586 4281 3999 207 48 48 24 chr4 103100994 103101036 -99227311 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 12319 172 70 19 chr4 103101036 103103981 -99224366 - L1P5 LINE L1 -2868 3999 636 1254 135 0 0 chr4 103104000 103104193 -99224154 - L1P5 LINE L1 -6667 196 4 24 0 0 0 chr4 103106371 103106395 -99221952 + AT_rich Low_complexity Low_complexity 1 24 0 1812 91 0 4 chr4 103106605 103106856 -99221491 + AluY SINE Alu 51 300 0 23 0 0 0 chr4 103107429 103107452 -99220895 + AT_rich Low_complexity Low_complexity 1 23 0 2175 113 0 50 chr4 103107582 103107901 -99220446 + AluSx SINE Alu 1 303 -9 2325 42 0 52 chr4 103107972 103108299 -99220048 + AluY SINE Alu 1 311 0 21 0 0 0 chr4 103108368 103108389 -99219958 + AT_rich Low_complexity Low_complexity 1 21 0 552 244 86 117 chr4 103108633 103109096 -99219251 + HAL1 LINE L1 574 1022 -1485 238 268 14 0 chr4 103109225 103109296 -99219051 - MER116 DNA Mariner -8 72 1 4869 190 68 20 chr4 103109352 103111207 -99217140 - L1MC2 LINE L1 0 6344 4397 285 125 14 14 chr4 103111426 103111498 -99216849 + (TATAA)n Simple_repeat Simple_repeat 4 75 0 69 14 0 0 chr4 103111498 103111569 -99216778 + AT_rich Low_complexity Low_complexity 1 71 0 242 52 0 91 chr4 103111587 103111664 -99216683 + (TA)n Simple_repeat Simple_repeat 2 71 0 381 93 0 0 chr4 103112074 103112128 -99216219 + (GGAA)n Simple_repeat Simple_repeat 1 54 0 522 335 16 16 chr4 103112130 103112324 -99216023 + MIR3 SINE MIR 3 196 -12 21 0 0 0 chr4 103112329 103112350 -99215997 + AT_rich Low_complexity Low_complexity 1 21 0 455 290 104 82 chr4 103113059 103113435 -99214912 + MLT1J LTR MaLR 119 502 -9 30 0 0 0 chr4 103114119 103114149 -99214198 + AT_rich Low_complexity Low_complexity 1 30 0 43542 43 1 4 chr4 103114165 103120331 -99208016 - L1PA3 LINE L1 -3 6152 6 2435 146 12 0 chr4 103120340 103120750 -99207597 - L1M2 LINE L1 -644 5668 5254 326 320 20 0 chr4 103120773 103120926 -99207421 + (TA)n Simple_repeat Simple_repeat 2 157 0 304 244 93 0 chr4 103120926 103121012 -99207335 + L1MC4 LINE L1 6614 6707 -1335 1364 174 12 0 chr4 103121031 103121273 -99207074 - L1PB3 LINE L1 -36 6118 5874 260 224 10 0 chr4 103121277 103121375 -99206972 + (TA)n Simple_repeat Simple_repeat 1 99 0 572 249 0 58 chr4 103121386 103121469 -99206878 - L1M2 LINE L1 -902 5244 5158 2252 92 0 3 chr4 103121469 103121764 -99206583 - AluY SINE Alu -17 294 1 572 249 0 58 chr4 103121764 103121885 -99206462 - L1M2 LINE L1 -988 5158 5052 1948 173 4 92 chr4 103121906 103122038 -99206309 + L1 LINE L1 3803 3945 -2201 1698 104 4 4 chr4 103122038 103122288 -99206059 + L1PA13 LINE L1 5909 6158 -5 1948 173 4 92 chr4 103122288 103122634 -99205713 + L1 LINE L1 3945 4239 -1907 1062 303 10 19 chr4 103122637 103122951 -99205396 + L1PA13 LINE L1 789 1099 -6475 5071 151 19 18 chr4 103122962 103124027 -99204320 - L1PB3 LINE L1 -2 6152 5096 950 211 4 13 chr4 103124044 103124276 -99204071 + L1 LINE L1 4831 5060 -1086 591 291 35 48 chr4 103124277 103124593 -99203754 + L1PA13 LINE L1 1088 1399 -6175 262 269 13 13 chr4 103124666 103124744 -99203603 + L1PA13 LINE L1 2221 2298 -5276 248 304 13 13 chr4 103124721 103124800 -99203547 + L1PA13 LINE L1 2103 2181 -5400 * 2866 230 44 24 chr4 103125092 103125957 -99202390 + L1PA13 LINE L1 2181 3002 -4572 3678 142 8 2 chr4 103125957 103126556 -99201791 + L1PA16 LINE L1 5562 6164 -2 2866 230 44 24 chr4 103126556 103126575 -99201772 + L1PA13 LINE L1 3002 3019 -4555 899 162 22 5 chr4 103126557 103126742 -99201605 + L1 LINE L1 4239 4426 -1720 * 388 106 0 181 chr4 103127153 103127247 -99201100 + MADE1 DNA Mariner 1 77 -3 360 0 0 0 chr4 103127456 103127496 -99200851 + (GA)n Simple_repeat Simple_repeat 1 40 0 378 204 0 0 chr4 103127542 103127645 -99200702 + CT-rich Low_complexity Low_complexity 1 103 0 204 158 0 0 chr4 103127644 103127682 -99200665 + (CA)n Simple_repeat Simple_repeat 1 38 0 * 22 0 0 0 chr4 103128710 103128732 -99199615 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 103128775 103128796 -99199551 + AT_rich Low_complexity Low_complexity 1 21 0 388 227 156 14 chr4 103128841 103128982 -99199365 - MER103 DNA DNA -3 163 3 1256 119 82 26 chr4 103129933 103130201 -99198146 - L1MB3 LINE L1 -7 6176 5894 303 293 60 35 chr4 103130218 103130334 -99198013 - HAL1 LINE L1 -575 1932 1814 731 288 135 57 chr4 103130399 103131034 -99197313 - HAL1 LINE L1 -962 1545 861 830 321 77 24 chr4 103131609 103132420 -99195927 + L1M4 LINE L1 4074 4943 -1203 1701 166 70 17 chr4 103132420 103132776 -99195571 + THE1C LTR MaLR 1 375 0 830 321 77 24 chr4 103132776 103132899 -99195448 + L1M4 LINE L1 4943 5058 -1088 752 224 36 0 chr4 103132924 103133089 -99195258 - L1PA16 LINE L1 -23 6143 5973 2117 73 0 54 chr4 103133285 103133601 -99194746 + AluY SINE Alu 1 299 -12 25 31 0 0 chr4 103134373 103134405 -99193942 + AT_rich Low_complexity Low_complexity 1 32 0 181 357 98 0 chr4 103136122 103136234 -99192113 - MIR SINE MIR -93 169 47 314 286 36 18 chr4 103136922 103137034 -99191313 - MER5A DNA MER1_type -60 129 16 1190 190 18 18 chr4 103137277 103137498 -99190849 - MER46A DNA MER2_type -14 222 2 22 0 0 0 chr4 103138146 103138168 -99190179 + AT_rich Low_complexity Low_complexity 1 22 0 6660 53 11 0 chr4 103139518 103140664 -99187683 - L1PA7 LINE L1 -13 6141 5032 22 0 0 0 chr4 103141764 103141786 -99186561 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 103142147 103142177 -99186170 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr4 103142242 103142278 -99186069 + AT_rich Low_complexity Low_complexity 1 36 0 1210 191 9 0 chr4 103142616 103142831 -99185516 + MER1B DNA MER1_type 1 217 -80 23 0 0 0 chr4 103143935 103143958 -99184389 + AT_rich Low_complexity Low_complexity 1 23 0 2191 117 3 0 chr4 103144430 103144729 -99183618 + AluSx SINE Alu 1 300 -12 1020 238 61 21 chr4 103144832 103145160 -99183187 - MER110 LTR ERV1 0 491 151 30 0 0 0 chr4 103145357 103145387 -99182960 + AT_rich Low_complexity Low_complexity 1 30 0 225 384 71 0 chr4 103146348 103146460 -99181887 + L2 LINE L2 3149 3268 -4 231 175 16 48 chr4 103147462 103147525 -99180822 + L1MDb LINE L1 774 834 -5575 1149 279 19 8 chr4 103147544 103147917 -99180430 + L1MDb LINE L1 757 1133 -5276 4352 230 41 58 chr4 103147920 103149858 -99178489 + L1P3 LINE L1 1 1886 -4565 246 203 43 72 chr4 103149860 103149929 -99178418 + MER5B DNA MER1_type 112 178 0 347 248 53 26 chr4 103150451 103150564 -99177783 - L2 LINE L2 -961 2353 2238 897 172 73 0 chr4 103151491 103151695 -99176652 - L1MB3 LINE L1 -1 6182 5964 1390 133 60 0 chr4 103151706 103151924 -99176423 - MER46A DNA MER2_type -5 231 1 1461 97 40 0 chr4 103151924 103152151 -99176196 - L1MB3 LINE L1 -217 5966 5731 285 322 87 26 chr4 103152209 103152324 -99176023 - L2 LINE L2 -8 3264 3143 479 254 207 23 chr4 103152346 103152563 -99175784 - MIR SINE MIR -5 257 1 235 337 71 51 chr4 103152789 103153044 -99175303 - L2 LINE L2 -460 2854 2595 465 214 152 0 chr4 103153138 103153250 -99175097 - MER94 DNA DNA 0 134 6 297 296 83 8 chr4 103153272 103153404 -99174943 - L2 LINE L2 -840 2474 2333 252 59 0 0 chr4 103155512 103155546 -99172801 + (CA)n Simple_repeat Simple_repeat 1 34 0 247 196 36 0 chr4 103155618 103155674 -99172673 + L1MC4 LINE L1 6645 6702 -1340 2519 100 6 3 chr4 103155677 103156038 -99172309 + L1PB1 LINE L1 5785 6146 -5 1079 260 108 38 chr4 103156060 103156933 -99171414 + L1M4 LINE L1 2759 3692 -2454 2063 311 63 23 chr4 103156934 103157856 -99170491 + ERVL LTR ERVL 4421 5379 -385 1527 189 23 77 chr4 103157973 103158412 -99169935 + L1M3e LINE L1 1 415 -6615 * 1594 191 99 16 chr4 103158402 103158848 -99169499 + L1M3e LINE L1 2032 2514 -4523 2481 176 74 13 chr4 103158849 103159388 -99168959 + L1MA9 LINE L1 5741 6312 0 496 182 336 0 chr4 103159685 103159828 -99168519 + LTR50 LTR ERVL 12 202 -593 3787 84 453 36 chr4 103160140 103161047 -99167300 + pTR5 LTR ERV1 741 2025 -413 311 223 20 95 chr4 103161047 103161195 -99167152 + LTR30 LTR ERV1 544 680 -42 1279 57 57 0 chr4 103161195 103161371 -99166976 + LTR12 LTR ERV1 529 714 0 26 30 0 0 chr4 103162446 103162479 -99165868 + AT_rich Low_complexity Low_complexity 1 33 0 962 238 148 22 chr4 103162828 103163152 -99165195 + LTR50 LTR ERVL 428 792 -3 510 314 98 15 chr4 103163974 103164178 -99164169 - MIR SINE MIR -24 238 18 29 47 0 0 chr4 103164222 103164265 -99164082 + AT_rich Low_complexity Low_complexity 1 43 0 354 268 354 6 chr4 103164785 103164949 -99163398 + MIR SINE MIR 42 262 0 10505 200 8 26 chr4 103165949 103166962 -99161385 - L1PA14 LINE L1 -1 7598 6569 183 42 0 0 chr4 103166962 103166986 -99161361 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1920 139 4 4 chr4 103166986 103167266 -99161081 - AluSc SINE Alu -29 280 1 10505 200 8 26 chr4 103167266 103169408 -99158939 - L1PA14 LINE L1 -1028 6571 4474 24656 167 11 20 chr4 103169412 103175990 -99152357 - L1PA10 LINE L1 0 6483 1 7206 233 12 4 chr4 103175990 103177793 -99150554 - L1PA14 LINE L1 -3105 4479 2663 439 303 31 63 chr4 103178074 103178457 -99149890 - HAL1 LINE L1 -840 1667 1297 33 25 0 0 chr4 103178770 103178810 -99149537 + AT_rich Low_complexity Low_complexity 1 40 0 274 195 23 0 chr4 103179174 103179261 -99149086 + (TA)n Simple_repeat Simple_repeat 1 89 0 1943 172 34 6 chr4 103180020 103180375 -99147972 - MLT1A1 LTR MaLR 0 365 1 34 42 0 0 chr4 103181408 103181456 -99146891 + AT_rich Low_complexity Low_complexity 1 48 0 13520 205 35 50 chr4 103182136 103182854 -99145493 - L1PB3 LINE L1 -2 6868 6141 1823 183 0 0 chr4 103182854 103183139 -99145208 + AluJb SINE Alu 5 289 -23 13520 205 35 50 chr4 103183139 103187703 -99140644 - L1PB3 LINE L1 -729 6141 2729 3939 115 26 81 chr4 103187703 103188434 -99139913 + LTR8 LTR ERV1 1 691 0 13520 205 35 50 chr4 103188434 103190586 -99137761 - L1PB3 LINE L1 -4141 2729 546 1270 288 28 7 chr4 103190619 103191042 -99137305 - L1PB3 LINE L1 -6429 434 3 773 259 94 64 chr4 103191827 103192287 -99136060 + L1ME LINE L1 561 1006 -5074 2269 103 0 3 chr4 103192287 103192588 -99135759 - AluY SINE Alu -11 300 1 773 259 94 64 chr4 103192588 103193146 -99135201 + L1ME LINE L1 1006 1574 -4506 33 43 0 0 chr4 103193387 103193434 -99134913 + AT_rich Low_complexity Low_complexity 1 47 0 839 211 19 10 chr4 103193481 103193690 -99134657 + L1PB1 LINE L1 6 216 -6647 * 2547 166 6 21 chr4 103193667 103194142 -99134205 + L1PB1 LINE L1 1392 1859 -5004 259 175 0 68 chr4 103194144 103194247 -99134100 + (TA)n Simple_repeat Simple_repeat 2 97 0 14343 193 20 9 chr4 103194254 103195100 -99133247 + L1PB1 LINE L1 1871 2706 -4161 1924 161 0 6 chr4 103195100 103195411 -99132936 + AluSx SINE Alu 1 309 -3 14343 193 20 9 chr4 103195411 103199442 -99128905 + L1PB1 LINE L1 2706 6867 0 656 281 158 0 chr4 103199690 103199911 -99128436 - MIR SINE MIR 0 262 7 2152 117 0 0 chr4 103199953 103200269 -99128078 + AluSg SINE Alu 1 316 0 22 56 0 0 chr4 103200400 103200436 -99127911 + AT_rich Low_complexity Low_complexity 1 36 0 354 177 0 26 chr4 103200444 103200451 -99127896 + (TA)n Simple_repeat Simple_repeat 2 8 -103 1338 201 29 14 chr4 103200451 103200730 -99127617 + AluJo SINE Alu 3 285 -27 354 177 0 26 chr4 103200730 103200835 -99127512 + (TA)n Simple_repeat Simple_repeat 8 111 0 22 70 0 0 chr4 103200970 103201013 -99127334 + AT_rich Low_complexity Low_complexity 1 43 0 1215 211 146 39 chr4 103201124 103201536 -99126811 - LTR40b LTR ERVL -4 458 3 226 310 0 0 chr4 103201864 103201922 -99126425 - L3 LINE CR1 -197 1380 1323 20959 124 15 18 chr4 103201948 103205320 -99123027 + L1PA6 LINE L1 11 3372 -2774 14865 58 15 0 chr4 103205321 103205821 -99122526 + L1PA6 LINE L1 3446 3937 -2217 6724 74 31 0 chr4 103205821 103206691 -99121656 + MER11D LTR ERVK 1 897 0 14865 58 15 0 chr4 103206691 103208887 -99119460 + L1PA6 LINE L1 3937 6154 0 25 31 0 0 chr4 103208888 103208920 -99119427 + AT_rich Low_complexity Low_complexity 1 32 0 327 239 108 91 chr4 103208931 103209107 -99119240 - L3 LINE CR1 -271 1306 1128 460 216 50 22 chr4 103209113 103209294 -99119053 - L1MEc LINE L1 -5322 1074 889 295 247 45 11 chr4 103209616 103209705 -99118642 + L1ME1 LINE L1 5520 5611 -555 2210 126 36 36 chr4 103209705 103210069 -99118278 + THE1B LTR MaLR 1 364 0 10778 93 61 1 chr4 103210069 103211559 -99116788 + THE1B-int LTR MaLR 1 1580 0 2388 123 28 14 chr4 103211559 103211918 -99116429 + THE1B LTR MaLR 1 364 0 1303 250 55 8 chr4 103211918 103212376 -99115971 + L1ME1 LINE L1 5607 6159 -7 311 345 9 26 chr4 103212761 103212877 -99115470 + MIR3 SINE MIR 47 160 -48 3143 124 117 2 chr4 103214024 103214589 -99113758 + LTR24C LTR ERV1 6 635 0 694 305 31 0 chr4 103214617 103214840 -99113507 - MLT1H1 LTR MaLR -301 254 25 252 219 151 42 chr4 103214844 103214963 -99113384 + MLT1-int LTR MaLR 15 146 -1225 3598 111 20 0 chr4 103215211 103215754 -99112593 + L1PA13 LINE L1 5608 6161 -2 356 265 25 133 chr4 103216359 103216676 -99111671 + MLT1-int LTR MaLR 961 1243 -128 482 227 10 0 chr4 103216684 103216781 -99111566 + AluJ/FLAM SINE Alu 1 98 -214 10727 54 2 4 chr4 103217006 103218401 -99109946 + L1P LINE L1 947 2339 -3807 9052 40 1 3 chr4 103218397 103219543 -99108804 + L1P LINE L1 2926 4069 -2077 * 308 281 132 30 chr4 103219786 103219953 -99108394 - MER5A DNA MER1_type -2 187 4 2478 211 148 6 chr4 103220419 103221060 -99107287 + MER44D DNA MER2_type 2 605 0 1172 153 10 83 chr4 103221495 103221808 -99106539 + AluSx SINE Alu 4 293 -9 1357 272 132 16 chr4 103221923 103222355 -99105992 - L2 LINE L2 0 3313 2933 360 0 0 0 chr4 103222355 103222395 -99105952 + (TG)n Simple_repeat Simple_repeat 1 40 0 1357 272 132 16 chr4 103222395 103222691 -99105656 - L2 LINE L2 -380 2933 2499 329 322 75 17 chr4 103224256 103224430 -99103917 - L2 LINE L2 -752 2562 2379 297 51 0 0 chr4 103224438 103224477 -99103870 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr4 103224635 103224656 -99103691 + AT_rich Low_complexity Low_complexity 1 21 0 504 267 28 117 chr4 103225013 103225219 -99103128 - MER5B DNA MER1_type 0 178 4 237 280 0 13 chr4 103225342 103225417 -99102930 + L1MC4a LINE L1 5891 5964 -1844 226 254 17 0 chr4 103225426 103225485 -99102862 + L1MC4a LINE L1 5980 6039 -1769 1551 244 115 99 chr4 103225723 103225977 -99102370 + L1MC4 LINE L1 6129 6377 -1665 1760 170 49 0 chr4 103225977 103226265 -99102082 + AluSx SINE Alu 4 305 -7 1551 244 115 99 chr4 103226265 103226954 -99101393 + L1MC4 LINE L1 6377 7054 -988 2297 166 35 21 chr4 103226954 103227381 -99100966 - Tigger2a DNA MER2_type 0 434 2 1551 244 115 99 chr4 103227381 103228006 -99100341 + L1MC4 LINE L1 7054 7861 -181 315 0 0 0 chr4 103228006 103228041 -99100306 + (TG)n Simple_repeat Simple_repeat 2 36 0 1551 244 115 99 chr4 103228041 103228226 -99100121 + L1MC4 LINE L1 7861 8042 0 2070 96 0 0 chr4 103228247 103228508 -99099839 + AluY SINE Alu 13 273 -38 5621 215 49 67 chr4 103228609 103229658 -99098689 - L1P3 LINE L1 -4143 2318 1252 180 77 0 0 chr4 103229658 103229684 -99098663 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5621 215 49 67 chr4 103229684 103230910 -99097437 - L1P3 LINE L1 -5209 1252 87 195 114 0 0 chr4 103231838 103231873 -99096474 + (TTA)n Simple_repeat Simple_repeat 1 35 0 315 0 0 0 chr4 103232931 103232966 -99095381 + (TG)n Simple_repeat Simple_repeat 2 36 0 504 210 25 25 chr4 103234558 103234677 -99093670 - MIR SINE MIR -110 152 34 4169 216 70 12 chr4 103235173 103236509 -99091838 - L1M4c LINE L1 -4539 2107 679 3805 215 156 25 chr4 103236526 103237780 -99090567 + L1MC4 LINE L1 6397 7814 -228 13518 143 24 24 chr4 103237781 103238242 -99090105 - L1PA10 LINE L1 -10 6158 5698 2266 126 0 0 chr4 103238242 103238552 -99089795 - AluSg SINE Alu 0 310 1 13518 143 24 24 chr4 103238552 103239915 -99088432 - L1PA10 LINE L1 -470 5698 4336 2153 108 0 0 chr4 103239915 103240192 -99088155 - AluSc SINE Alu -32 277 1 13518 143 24 24 chr4 103240192 103241586 -99086761 - L1PA10 LINE L1 -1831 4337 2928 2027 106 7 3 chr4 103241687 103241969 -99086378 - AluSc SINE Alu -25 284 2 962 150 6 25 chr4 103241981 103242141 -99086206 + FRAM SINE Alu 1 151 -25 1000 291 74 3 chr4 103242270 103242566 -99085781 + MLT1H1 LTR MaLR 5 321 -234 378 174 138 37 chr4 103242535 103242644 -99085703 + MLT1H1 LTR MaLR 435 554 -1 * 260 70 23 0 chr4 103243764 103243807 -99084540 + (TA)n Simple_repeat Simple_repeat 1 44 0 2272 89 0 0 chr4 103243841 103244123 -99084224 - AluY SINE Alu -17 294 13 1452 216 70 172 chr4 103244144 103244329 -99084018 - L1MC4 LINE L1 0 8042 7840 333 0 0 0 chr4 103244329 103244366 -99083981 + (CA)n Simple_repeat Simple_repeat 2 38 0 1452 216 70 172 chr4 103244366 103244991 -99083356 - L1MC4 LINE L1 -202 7840 7153 2299 166 35 21 chr4 103244991 103245418 -99082929 + Tigger2a DNA MER2_type 2 434 0 1452 216 70 172 chr4 103245418 103246108 -99082239 - L1MC4 LINE L1 -889 7153 6407 1760 170 49 0 chr4 103246108 103246396 -99081951 - AluSx SINE Alu -7 305 4 1452 216 70 172 chr4 103246396 103246650 -99081697 - L1MC4 LINE L1 -1635 6407 6129 464 281 24 43 chr4 103246726 103246890 -99081457 + MER63A DNA MER1_type 50 210 0 400 294 49 7 chr4 103246905 103247048 -99081299 - L1MC4a LINE L1 -1769 6039 5891 505 270 22 117 chr4 103247171 103247378 -99080969 + MER5B DNA MER1_type 4 178 0 21 0 0 0 chr4 103247735 103247756 -99080591 + AT_rich Low_complexity Low_complexity 1 21 0 309 242 0 0 chr4 103247863 103247954 -99080393 + (CA)n Simple_repeat Simple_repeat 2 92 0 329 322 75 17 chr4 103247962 103248136 -99080211 + L2 LINE L2 2379 2562 -752 1357 273 132 16 chr4 103249702 103249998 -99078349 + L2 LINE L2 2499 2759 -554 342 0 0 0 chr4 103249998 103250036 -99078311 + (CA)n Simple_repeat Simple_repeat 1 38 0 1357 273 132 16 chr4 103250036 103250468 -99077879 + L2 LINE L2 2759 3313 0 1716 147 13 37 chr4 103250583 103250883 -99077464 - AluSx SINE Alu -19 293 1 2478 211 148 6 chr4 103251316 103251957 -99076390 - MER44D DNA MER2_type 0 605 2 317 313 121 12 chr4 103252423 103252589 -99075758 + MER5A DNA MER1_type 4 187 -2 2595 82 30 3 chr4 103252887 103253252 -99075095 - L1PB1 LINE L1 0 6151 5777 259 222 0 91 chr4 103253257 103253356 -99074991 + L1MC4 LINE L1 6614 6703 -1339 247 29 0 29 chr4 103253366 103253400 -99074947 + L1P5 LINE L1 5776 5808 -343 270 0 0 0 chr4 103253400 103253430 -99074917 + (TG)n Simple_repeat Simple_repeat 2 31 0 996 94 25 6 chr4 103253441 103253600 -99074747 - L1P5 LINE L1 -360 5791 5630 10829 192 64 7 chr4 103253701 103256220 -99072127 - L1P5 LINE L1 -433 6434 3720 185 0 40 0 chr4 103256220 103256245 -99072102 + (TTG)n Simple_repeat Simple_repeat 2 27 0 10829 192 64 7 chr4 103256245 103256676 -99071671 - L1P5 LINE L1 -3147 3720 3315 1608 125 74 40 chr4 103256673 103257430 -99070917 - L1P5 LINE L1 -5295 1568 636 * 1147 166 5 0 chr4 103257432 103257631 -99070716 - L1P5 LINE L1 -6663 200 1 1299 223 0 9 chr4 103257690 103257914 -99070433 + L1PA13 LINE L1 2 223 -6564 639 132 28 9 chr4 103257942 103258048 -99070299 + MSTA LTR MaLR 2 109 -319 4883 144 28 38 chr4 103258050 103259370 -99068977 + L1PA15 LINE L1 4447 5843 -322 2398 163 44 5 chr4 103259370 103259782 -99068565 - MSTA LTR MaLR 0 428 1 4883 144 28 38 chr4 103259782 103260086 -99068261 + L1PA15 LINE L1 5843 6149 -16 279 313 30 46 chr4 103260087 103260218 -99068129 - L2 LINE L2 -606 2708 2580 329 274 297 19 chr4 103260319 103260629 -99067718 + MLT1H1 LTR MaLR 34 429 -126 307 246 46 4 chr4 103261224 103261327 -99067020 + MLT1G1 LTR MaLR 443 595 0 2109 125 14 0 chr4 103261578 103261873 -99066474 + AluSx SINE Alu 1 299 -13 446 287 39 83 chr4 103261876 103262130 -99066217 - L2 LINE L2 -929 2385 2143 433 324 171 18 chr4 103263799 103264074 -99064273 - MER102b DNA MER1_type -11 330 14 5528 142 49 11 chr4 103266007 103266153 -99062194 - L1MA9 LINE L1 0 7272 7133 204 40 0 0 chr4 103266153 103266178 -99062169 + (TG)n Simple_repeat Simple_repeat 1 25 0 5528 142 49 11 chr4 103266178 103267218 -99061129 - L1MA9 LINE L1 -139 7133 6048 1998 139 7 3 chr4 103267226 103267536 -99060811 - MLT2A2 LTR ERVL -142 311 1 3087 206 37 0 chr4 103267554 103268209 -99060138 - L1MA9 LINE L1 -2004 5102 4424 4309 251 38 39 chr4 103268209 103270942 -99057405 + L1PA15-16 LINE L1 2 2931 -3918 3337 223 85 14 chr4 103270943 103271952 -99056395 - L1MA9 LINE L1 -2670 4436 3356 2113 194 49 13 chr4 103271944 103272475 -99055872 - L1 LINE L1 -2705 3441 2892 * 959 253 21 45 chr4 103272463 103273074 -99055273 - L1MA9 LINE L1 -3717 3389 2778 * 16733 116 7 9 chr4 103273085 103276461 -99051886 - L1PA8 LINE L1 -6 6481 3101 1133 129 5 21 chr4 103276483 103276676 -99051671 - L1PA8 LINE L1 -5679 196 7 2643 255 59 33 chr4 103276704 103277186 -99051161 - L1MA9 LINE L1 -4178 2929 2461 7080 57 3 0 chr4 103277186 103278338 -99050009 + L1PA7 LINE L1 4998 6149 -5 2643 255 59 33 chr4 103278338 103279560 -99048787 - L1MA9 LINE L1 -4646 2461 1310 1082 226 38 0 chr4 103279573 103279812 -99048535 - L1MA9 LINE L1 -6741 289 42 1549 163 31 35 chr4 103279813 103280132 -99048215 + THE1C LTR MaLR 1 318 -57 43637 43 1 3 chr4 103280147 103286269 -99042078 - L1PA4 LINE L1 -3 6152 40 409 162 32 19 chr4 103286269 103286378 -99041969 + MSTA LTR MaLR 311 428 0 247 267 93 70 chr4 103286938 103287110 -99041237 - MLT1L LTR MaLR -13 602 427 469 213 71 71 chr4 103288467 103288650 -99039697 + LTR41 LTR ERVL 2 184 -589 321 211 66 13 chr4 103288803 103288879 -99039468 + LTR41 LTR ERVL 506 585 -188 24 32 0 0 chr4 103289032 103289063 -99039284 + AT_rich Low_complexity Low_complexity 1 31 0 314 162 27 0 chr4 103289265 103289339 -99039008 - MLT1D LTR MaLR -1 504 429 * 600 160 47 0 chr4 103289331 103289437 -99038910 - MLT1D LTR MaLR -394 111 1 1408 193 27 108 chr4 103289450 103289859 -99038488 - MLT1D-int LTR MaLR -14 1357 982 799 267 26 22 chr4 103289981 103290213 -99038134 - MLT1D-int LTR MaLR -478 893 661 1587 227 21 26 chr4 103290265 103290710 -99037637 - MLT1D-int LTR MaLR -768 603 218 2404 250 43 21 chr4 103290852 103291743 -99036604 - L1M4 LINE L1 -3037 3109 2200 1740 286 60 12 chr4 103291750 103292316 -99036031 - HERVL LTR ERVL -2371 3283 2691 817 299 12 12 chr4 103292284 103292535 -99035812 - HERVL LTR ERVL -3214 2550 2300 * 2454 193 11 4 chr4 103292562 103293040 -99035307 + L1PA13 LINE L1 4539 5019 -1127 * 3805 147 13 9 chr4 103293015 103293522 -99034825 + L1PB1 LINE L1 4627 5130 -1021 2148 102 0 32 chr4 103293522 103293835 -99034512 + AluSc SINE Alu 1 303 -6 3805 147 13 9 chr4 103293835 103294490 -99033857 + L1PB1 LINE L1 5130 5792 -359 269 119 0 34 chr4 103294487 103294546 -99033801 + L1PB1 LINE L1 6094 6150 -1 * 20162 86 6 1 chr4 103294588 103298233 -99030114 + L1PA7 LINE L1 2508 6154 0 4763 99 4 3 chr4 103298265 103298950 -99029397 + L1PA13 LINE L1 5476 6161 -2 22 35 0 0 chr4 103298967 103298996 -99029351 + AT_rich Low_complexity Low_complexity 1 29 0 353 305 116 18 chr4 103299097 103299382 -99028965 + L1MD2 LINE L1 3419 3731 -2415 233 267 185 29 chr4 103299471 103299752 -99028595 + L1MD2 LINE L1 3868 4192 -1954 506 306 50 19 chr4 103299855 103300113 -99028234 + L1MD2 LINE L1 4273 4538 -1608 787 164 8 15 chr4 103300165 103300299 -99028048 - FLAM_A SINE Alu 0 133 1 249 246 29 0 chr4 103300462 103300531 -99027816 + L1MD2 LINE L1 4762 4832 -1314 529 296 127 22 chr4 103300662 103301506 -99026841 + L1MD2 LINE L1 4964 5807 -355 250 247 31 10 chr4 103301563 103301660 -99026687 + (TA)n Simple_repeat Simple_repeat 1 99 0 712 182 121 0 chr4 103301661 103301793 -99026554 + L1PB4 LINE L1 5991 6138 -18 12991 199 32 24 chr4 103301816 103305790 -99022557 - L1P5 LINE L1 -365 6027 2017 1936 131 0 10 chr4 103305889 103306202 -99022145 - L1PA14 LINE L1 0 6161 5852 287 353 0 0 chr4 103306305 103306475 -99021872 - L1M1 LINE L1 -4413 3152 2983 5090 243 61 75 chr4 103307625 103307828 -99020519 - L1M4c LINE L1 -4516 2137 1933 204 40 0 0 chr4 103307828 103307853 -99020494 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 5090 243 61 75 chr4 103307853 103309867 -99018480 - L1M4c LINE L1 -4720 1933 307 320 373 0 0 chr4 103311388 103311490 -99016857 + MIR SINE MIR 48 149 -113 2332 226 110 42 chr4 103311508 103312536 -99015811 + L1MC5 LINE L1 6800 7897 -64 21 0 0 0 chr4 103312562 103312583 -99015764 + AT_rich Low_complexity Low_complexity 1 21 0 2606 58 0 0 chr4 103312849 103313159 -99015188 + AluY SINE Alu 1 310 -1 290 191 16 16 chr4 103313160 103313223 -99015124 + L1M3b LINE L1 4 66 -6215 773 246 76 73 chr4 103313469 103313839 -99014508 + MLT1A2 LTR MaLR 4 374 0 1832 138 59 0 chr4 103313948 103314238 -99014109 + AluSq SINE Alu 2 308 -5 233 231 13 51 chr4 103314560 103314638 -99013709 - L1ME4a LINE L1 -98 6023 5949 22 56 0 0 chr4 103316688 103316724 -99011623 + AT_rich Low_complexity Low_complexity 1 36 0 33 0 0 0 chr4 103316949 103316982 -99011365 + AT_rich Low_complexity Low_complexity 1 33 0 416 291 9 0 chr4 103317284 103317394 -99010953 - MER45A DNA AcHobo -1 177 67 7489 195 81 22 chr4 103317409 103318786 -99009561 + L1PA14 LINE L1 1 1295 -5502 1961 156 115 23 chr4 103318786 103319178 -99009169 + MSTA LTR MaLR 1 428 0 7489 195 81 22 chr4 103319178 103321441 -99006906 + L1PA14 LINE L1 1295 4113 -2684 10051 167 14 14 chr4 103321475 103323331 -99005016 + L1PA14 LINE L1 4086 5933 -879 1891 158 142 16 chr4 103323331 103323711 -99004636 - MSTA LTR MaLR 0 428 1 10051 167 14 14 chr4 103323711 103324592 -99003755 + L1PA14 LINE L1 5932 6812 0 26 30 0 0 chr4 103324767 103324800 -99003547 + AT_rich Low_complexity Low_complexity 1 33 0 367 51 0 322 chr4 103324800 103324918 -99003429 - MADE1 DNA Mariner 0 80 1 887 135 0 0 chr4 103325049 103325175 -99003172 - AluJb SINE Alu -186 126 1 2135 117 0 0 chr4 103325294 103325584 -99002763 + AluSc SINE Alu 1 290 -19 1008 153 0 31 chr4 103325885 103326048 -99002299 + AluJo SINE Alu 3 160 -152 22 0 0 0 chr4 103326988 103327010 -99001337 + AT_rich Low_complexity Low_complexity 1 22 0 1022 179 0 0 chr4 103327022 103327195 -99001152 - FRAM SINE Alu -9 167 1 229 295 70 31 chr4 103327238 103327367 -99000980 + L1M4 LINE L1 4023 4156 -1990 24 53 0 0 chr4 103327438 103327476 -99000871 + AT_rich Low_complexity Low_complexity 1 38 0 274 296 131 40 chr4 103327801 103328000 -99000347 + MLT1K LTR MaLR 346 562 -26 27 49 0 0 chr4 103328097 103328138 -99000209 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chr4 103328218 103328247 -99000100 + AT_rich Low_complexity Low_complexity 1 29 0 1946 120 0 0 chr4 103328471 103328737 -98999610 + AluSx SINE Alu 40 305 -7 21 0 0 0 chr4 103329028 103329049 -98999298 + AT_rich Low_complexity Low_complexity 1 21 0 658 375 56 18 chr4 103330263 103330604 -98997743 + L2 LINE L2 2915 3268 -4 2298 134 12 0 chr4 103330793 103331137 -98997210 - MER7A DNA MER2_type 0 346 1 26 30 0 0 chr4 103331493 103331526 -98996821 + AT_rich Low_complexity Low_complexity 1 33 0 421 211 94 55 chr4 103331738 103331866 -98996481 + LTR40a LTR ERVL 1 133 -386 321 324 19 67 chr4 103332001 103332075 -98996272 + LTR40a LTR ERVL 179 255 -264 10223 135 30 2 chr4 103332075 103334751 -98993596 + L1PA11 LINE L1 3553 6227 0 321 324 19 67 chr4 103334751 103334884 -98993463 + LTR40a LTR ERVL 255 378 -141 394 246 100 9 chr4 103335017 103335127 -98993220 + MIR SINE MIR 71 190 -72 229 191 11 53 chr4 103335516 103335569 -98992778 + (TAA)n Simple_repeat Simple_repeat 3 52 -40 2148 117 0 3 chr4 103335569 103335859 -98992488 + AluSq SINE Alu 1 289 -24 229 191 11 53 chr4 103335859 103335899 -98992448 + (TAA)n Simple_repeat Simple_repeat 52 92 0 715 297 59 17 chr4 103336292 103336801 -98991546 - L1ME LINE L1 -4714 1789 1113 263 285 56 56 chr4 103337679 103337823 -98990524 - L1ME LINE L1 -5925 491 348 2477 67 0 0 chr4 103338088 103338386 -98989961 + AluY SINE Alu 1 298 -13 513 250 16 0 chr4 103339118 103339242 -98989105 + Charlie1 DNA MER1_type 5 130 -2631 588 162 35 78 chr4 103339262 103339351 -98988996 + Charlie1 DNA MER1_type 2620 2703 -58 1951 98 25 0 chr4 103339351 103339661 -98988686 - AluY SINE Alu 0 317 1 588 162 35 78 chr4 103339661 103339712 -98988635 + Charlie1 DNA MER1_type 2703 2755 -6 23 33 0 0 chr4 103341230 103341260 -98987087 + AT_rich Low_complexity Low_complexity 1 30 0 695 191 0 8 chr4 103342392 103342518 -98985829 - FLAM_A SINE Alu -8 125 1 192 77 0 0 chr4 103342686 103342712 -98985635 + (CATA)n Simple_repeat Simple_repeat 2 27 0 331 303 54 91 chr4 103344481 103344568 -98983779 + L2 LINE L2 2594 2683 -631 2194 86 30 3 chr4 103344568 103344871 -98983476 - AluY SINE Alu 0 311 1 331 303 54 91 chr4 103344871 103345004 -98983343 + L2 LINE L2 2683 2806 -508 317 283 109 54 chr4 103345102 103345286 -98983061 + L2 LINE L2 2700 2893 -421 209 282 0 77 chr4 103345727 103345805 -98982542 - L2 LINE L2 -50 3263 3192 3255 223 93 21 chr4 103345814 103345973 -98982374 - L1ME1 LINE L1 -15 6151 6005 1234 187 59 24 chr4 103345973 103346262 -98982085 - AluJo SINE Alu -3 299 1 3255 223 93 21 chr4 103346262 103347253 -98981094 - L1ME1 LINE L1 -161 6005 4829 180 0 0 0 chr4 103347253 103347273 -98981074 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 3255 223 93 21 chr4 103347273 103347894 -98980453 - L1ME1 LINE L1 -1337 4829 4254 394 201 216 29 chr4 103348332 103348471 -98979876 - MIR SINE MIR -75 187 23 189 0 0 0 chr4 103348786 103348807 -98979540 + (A)n Simple_repeat Simple_repeat 1 21 0 2539 52 0 0 chr4 103349672 103349979 -98978368 - AluY SINE Alu -4 307 1 208 401 33 33 chr4 103350144 103350356 -98977991 - L2 LINE L2 -252 3020 2809 30 45 0 0 chr4 103350643 103350687 -98977660 + AT_rich Low_complexity Low_complexity 1 44 0 180 0 0 0 chr4 103350792 103350812 -98977535 + (A)n Simple_repeat Simple_repeat 1 20 0 197 143 0 20 chr4 103350905 103350954 -98977393 + (TCCA)n Simple_repeat Simple_repeat 4 51 0 5816 152 11 7 chr4 103351178 103352841 -98975506 - L1PB2 LINE L1 0 6151 4488 225 139 0 0 chr4 103353070 103353113 -98975234 + (CA)n Simple_repeat Simple_repeat 2 44 0 182 315 0 14 chr4 103353178 103353251 -98975096 + L2 LINE L2 2440 2511 -803 345 357 155 59 chr4 103353505 103353827 -98974520 + L2 LINE L2 2914 3266 -6 * 602 291 50 50 chr4 103353825 103354083 -98974264 - MIR SINE MIR 0 262 5 3804 160 55 21 chr4 103355596 103356984 -98971363 + L1MA1 LINE L1 16 1463 -6102 16077 162 24 12 chr4 103357057 103358232 -98970115 + L1MA1 LINE L1 3135 4294 -3427 1949 152 3 13 chr4 103358232 103358535 -98969812 + AluJo SINE Alu 1 300 -12 16077 162 24 12 chr4 103358535 103361894 -98966453 + L1MA1 LINE L1 4294 7721 0 1491 97 18 0 chr4 103361933 103362160 -98966187 + L1MA2 LINE L1 6070 6300 -4 2313 105 0 3 chr4 103362782 103363095 -98965252 - AluSx SINE Alu 0 312 1 912 236 61 5 chr4 103364383 103364595 -98963752 + MER58A DNA MER1_type 1 224 0 202 128 28 64 chr4 103364913 103365022 -98963325 + (TATAA)n Simple_repeat Simple_repeat 5 109 0 23 33 0 0 chr4 103365026 103365056 -98963291 + AT_rich Low_complexity Low_complexity 1 30 0 293 227 103 10 chr4 103365270 103365367 -98962980 - L1ME4a LINE L1 -25 6096 5991 2253 91 3 0 chr4 103365476 103365800 -98962547 + AluSp SINE Alu 1 325 0 237 311 208 9 chr4 103365812 103366134 -98962213 + L2 LINE L2 1986 2371 -943 23 0 0 0 chr4 103366413 103366436 -98961911 + AT_rich Low_complexity Low_complexity 1 23 0 2513 132 19 0 chr4 103367036 103367406 -98960941 + MER57B LTR ERV1 58 434 0 2682 130 9 30 chr4 103367406 103367838 -98960509 + MER57B-int LTR ERV1 1 423 -7114 234 246 77 0 chr4 103367860 103367925 -98960422 + L3 LINE CR1 1420 1489 -88 247 329 49 63 chr4 103368673 103368816 -98959531 + MIR3 SINE MIR 14 154 -54 358 269 59 8 chr4 103368823 103368942 -98959405 + MIR SINE MIR 138 262 0 257 330 96 26 chr4 103370169 103370284 -98958063 + L2 LINE L2 3149 3271 -1 596 329 40 22 chr4 103370747 103370975 -98957372 + MIR SINE MIR 1 232 -30 1203 75 6 0 chr4 103370992 103371151 -98957196 + L1PA7 LINE L1 5991 6150 -4 3744 152 57 9 chr4 103372245 103372918 -98955429 + MER50 LTR ERV1 1 705 -29 2973 176 32 2 chr4 103373746 103374239 -98954108 + MLT2B3 LTR ERVL 1 508 -46 265 254 73 0 chr4 103374249 103374304 -98954043 + Tigger3(Golem) DNA MER2_type 3 61 -2968 290 227 23 23 chr4 103424412 103424500 -98903847 + L1ME LINE L1 4769 4856 -1290 1639 236 4 13 chr4 103424507 103424939 -98903408 + L1ME LINE L1 5159 5584 -580 2039 108 3 17 chr4 103424939 103425419 -98902928 - AluSx SINE Alu 0 312 1 1639 236 4 13 chr4 103425419 103425511 -98902836 + L1ME LINE L1 5584 5675 -489 705 208 36 0 chr4 103425631 103425799 -98902548 + MLT1A1 LTR MaLR 192 365 0 1724 180 7 10 chr4 103426227 103426527 -98901820 + AluJo SINE Alu 1 299 -13 925 256 77 43 chr4 103426733 103427147 -98901200 + L1M4 LINE L1 14 441 -6101 374 251 12 55 chr4 103427203 103427366 -98900981 + L1M4 LINE L1 2242 2397 -4249 232 323 50 5 chr4 103427382 103427580 -98900767 - L1M4c LINE L1 -4071 2575 2369 2102 191 28 148 chr4 103427602 103427722 -98900625 + L1M4 LINE L1 2586 2719 -3925 2416 70 3 3 chr4 103427722 103428022 -98900325 + AluY SINE Alu 1 300 -11 2102 191 28 148 chr4 103428022 103428255 -98900092 + L1M4 LINE L1 2719 2978 -3666 1009 108 0 0 chr4 103428255 103428384 -98899963 + AluSq/x SINE Alu 1 129 -184 2102 191 28 148 chr4 103428384 103428965 -98899382 + L1M4 LINE L1 2978 3522 -3122 15979 140 21 10 chr4 103429188 103430529 -98897818 - L1P4 LINE L1 -481 5687 4362 2183 124 0 0 chr4 103430529 103430828 -98897519 - AluSc SINE Alu -10 299 1 15979 140 21 10 chr4 103430828 103432718 -98895629 - L1P4 LINE L1 -1806 4362 2425 353 138 0 46 chr4 103432848 103432913 -98895434 + MER50 LTR ERV1 644 705 -29 3130 169 37 17 chr4 103433744 103434246 -98894101 + MLT2B3 LTR ERVL 1 516 -38 1656 186 11 63 chr4 103434246 103434612 -98893735 + MER7A DNA MER2_type 2 346 0 3130 169 37 17 chr4 103434612 103434652 -98893695 + MLT2B3 LTR ERVL 516 554 0 195 114 0 0 chr4 103435774 103435809 -98892538 + (TTA)n Simple_repeat Simple_repeat 1 35 0 243 0 0 0 chr4 103436874 103436901 -98891446 + (TG)n Simple_repeat Simple_repeat 2 28 0 504 210 25 25 chr4 103438493 103438612 -98889735 - MIR SINE MIR -110 152 34 4169 216 70 12 chr4 103439108 103440444 -98887903 - L1M4c LINE L1 -4539 2107 679 3838 214 156 25 chr4 103440461 103441715 -98886632 + L1MC4 LINE L1 6397 7814 -228 3000 90 58 42 chr4 103441716 103442177 -98886170 - L1PA10 LINE L1 -10 6158 5687 2266 126 0 0 chr4 103442177 103442487 -98885860 - AluSg SINE Alu 0 310 1 3000 90 58 42 chr4 103442487 103442525 -98885822 - L1PA10 LINE L1 -481 5687 5651 1735 224 134 33 chr4 103442625 103443164 -98885183 - MLT1E2 LTR MaLR -33 593 1 333 229 14 0 chr4 103443164 103443234 -98885113 - MLT1L LTR MaLR -392 223 153 2350 80 13 0 chr4 103443566 103443868 -98884479 + AluY SINE Alu 1 306 -5 187 265 20 41 chr4 103444757 103444806 -98883541 - MIR3 SINE MIR -49 159 112 21 0 0 0 chr4 103445956 103445977 -98882370 + AT_rich Low_complexity Low_complexity 1 21 0 205 225 0 0 chr4 103446348 103446388 -98881959 + L2 LINE L2 3262 3301 -12 2082 148 33 14 chr4 103446537 103446903 -98881444 - L1MB2 LINE L1 -2 6169 5797 564 167 56 0 chr4 103447430 103447556 -98880791 + MER58 DNA MER1_type 71 203 -138 311 276 0 0 chr4 103447605 103447692 -98880655 - L1M4 LINE L1 -1317 4898 4812 491 316 40 90 chr4 103447918 103448201 -98880146 - L1M4 LINE L1 -1730 4485 4210 232 100 0 0 chr4 103448201 103448231 -98880116 - U6 snRNA snRNA -76 31 2 491 316 40 90 chr4 103448231 103448450 -98879897 - L1M4 LINE L1 -2005 4210 3981 231 97 0 0 chr4 103448462 103448493 -98879854 + Alu SINE Alu 35 65 -237 519 364 49 10 chr4 103448493 103448878 -98879469 - L1M4 LINE L1 -2221 3994 3595 279 191 45 45 chr4 103448904 103448993 -98879354 - L1MC3 LINE L1 -16 7769 7681 453 212 0 12 chr4 103449008 103449093 -98879254 + FRAM SINE Alu 71 154 -22 467 116 35 0 chr4 103449139 103449225 -98879122 - L1MC3 LINE L1 -144 7641 7553 1775 33 0 0 chr4 103449761 103449974 -98878373 - L1PA5 LINE L1 -1 6153 5941 491 202 0 0 chr4 103449980 103450064 -98878283 - FRAM SINE Alu -21 155 72 709 158 22 50 chr4 103450090 103450229 -98878118 - AluJo SINE Alu -177 135 1 235 65 0 0 chr4 103451131 103451162 -98877185 - L1PB1 LINE L1 -188 5963 5933 195 204 0 0 chr4 103451755 103451809 -98876538 + T-rich Low_complexity Low_complexity 1 54 0 185 250 125 50 chr4 103453844 103453924 -98874423 + L2 LINE L2 3221 3306 -7 5764 62 14 9 chr4 103453998 103454760 -98873587 - MER4E LTR ERV1 0 766 1 347 353 134 48 chr4 103455015 103455537 -98872810 + L2 LINE L2 2283 2849 -465 228 371 119 42 chr4 103455614 103455900 -98872447 + L2 LINE L2 2929 3236 -36 252 242 16 0 chr4 103457535 103457597 -98870750 + L2 LINE L2 2326 2388 -926 231 281 193 59 chr4 103457760 103457895 -98870452 + L2 LINE L2 3118 3270 -2 234 240 53 53 chr4 103457930 103458005 -98870342 - L2 LINE L2 -47 3266 3192 2120 216 62 28 chr4 103458656 103459335 -98869012 - L1MEc LINE L1 -3699 2523 1853 2031 155 22 11 chr4 103459335 103459696 -98868651 + MER47A DNA MER2_type 1 365 -1 2120 216 62 28 chr4 103459696 103459739 -98868608 - L1MEc LINE L1 -4369 1853 1813 716 198 103 34 chr4 103459751 103460014 -98868333 - L1MEc LINE L1 -5304 1092 812 227 259 35 0 chr4 103460250 103460308 -98868039 + CT-rich Low_complexity Low_complexity 4 63 0 26 0 0 0 chr4 103461305 103461331 -98867016 + AT_rich Low_complexity Low_complexity 1 26 0 28 48 0 0 chr4 103461727 103461769 -98866578 + AT_rich Low_complexity Low_complexity 1 42 0 216 0 0 0 chr4 103462988 103463012 -98865335 + (T)n Simple_repeat Simple_repeat 1 24 0 24 32 0 0 chr4 103463859 103463890 -98864457 + AT_rich Low_complexity Low_complexity 1 31 0 193 279 49 16 chr4 103464539 103464600 -98863747 - L2 LINE L2 -9 3304 3242 2636 52 0 0 chr4 103465010 103465320 -98863027 - AluY SINE Alu -1 310 1 1959 132 0 24 chr4 103465478 103465767 -98862580 + AluSx SINE Alu 1 282 -30 2291 95 0 10 chr4 103465803 103466107 -98862240 + AluSq SINE Alu 3 303 -10 23 33 0 0 chr4 103466272 103466302 -98862045 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr4 103466312 103466338 -98862009 + AT_rich Low_complexity Low_complexity 1 26 0 379 245 60 40 chr4 103466402 103466553 -98861794 - L1ME4a LINE L1 -118 6003 5850 2164 129 0 13 chr4 103466927 103467236 -98861111 + AluSx SINE Alu 1 305 -7 734 253 170 8 chr4 103467637 103467890 -98860457 - MLT1J2 LTR MaLR -1 449 156 451 191 90 10 chr4 103467890 103468001 -98860346 - MLT1J2 LTR MaLR -290 119 1 36 40 0 0 chr4 103468854 103468904 -98859443 + AT_rich Low_complexity Low_complexity 1 50 0 739 231 75 27 chr4 103469009 103469252 -98859095 - L1MD3 LINE L1 0 8038 7809 5837 221 49 62 chr4 103469258 103470562 -98857785 + L1P3 LINE L1 3 1255 -5206 180 77 0 0 chr4 103470562 103470588 -98857759 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5837 221 49 62 chr4 103470588 103471788 -98856559 + L1P3 LINE L1 1255 2470 -3991 990 227 28 24 chr4 103473281 103473312 -98855035 - MLT2D LTR ERVL -6 408 379 492 32 0 0 chr4 103473312 103473374 -98854973 + (TG)n Simple_repeat Simple_repeat 2 63 0 990 227 28 24 chr4 103473374 103473593 -98854754 - MLT2D LTR ERVL -35 379 157 7202 188 26 7 chr4 103473593 103474860 -98853487 - L1M1 LINE L1 -6264 1301 11 1216 204 60 39 chr4 103474848 103474984 -98853363 - L1MC4 LINE L1 -514 7528 7396 * 3563 186 113 20 chr4 103474984 103475774 -98852573 + MER21B LTR ERV1 1 863 0 1216 204 60 39 chr4 103475774 103475971 -98852376 - L1MC4 LINE L1 -646 7396 7188 180 77 0 0 chr4 103476946 103476972 -98851375 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 1652 147 37 11 chr4 103476979 103477251 -98851096 - AluJo SINE Alu -33 279 1 305 322 0 53 chr4 103478344 103478515 -98849832 + L2 LINE L2 2573 2734 -580 315 243 74 88 chr4 103479566 103479613 -98848734 + MER92C LTR ERV1 20 66 -488 2162 112 7 3 chr4 103479613 103479917 -98848430 + AluSc SINE Alu 1 305 -4 315 243 74 88 chr4 103479917 103480017 -98848330 + MER92C LTR ERV1 66 165 -389 366 229 49 49 chr4 103480039 103480161 -98848186 + MER92C LTR ERV1 428 549 -5 276 231 77 44 chr4 103480195 103480286 -98848061 + MIR SINE MIR 165 258 -4 39 50 0 0 chr4 103480319 103480379 -98847968 + AT_rich Low_complexity Low_complexity 1 60 0 2527 58 0 3 chr4 103480620 103480932 -98847415 + AluY SINE Alu 1 311 0 667 108 0 0 chr4 103481474 103481567 -98846780 + HY4 scRNA scRNA 1 93 0 23 33 0 0 chr4 103481575 103481605 -98846742 + AT_rich Low_complexity Low_complexity 1 30 0 506 236 177 87 chr4 103481782 103481821 -98846526 - MLT1J LTR MaLR -49 462 428 4570 85 58 2 chr4 103481821 103482446 -98845901 - PABL_A LTR ERV1 0 660 1 506 236 177 87 chr4 103482446 103482740 -98845607 - MLT1J LTR MaLR -83 428 99 3464 64 23 0 chr4 103482817 103483253 -98845094 + MLT2A2 LTR ERVL 1 446 -7 457 225 0 18 chr4 103484830 103484999 -98843348 + CT-rich Low_complexity Low_complexity 1 166 0 1444 251 38 103 chr4 103486297 103487133 -98841214 - MER20B DNA MER1_type 0 783 2 369 58 0 0 chr4 103487310 103487362 -98840985 + (TG)n Simple_repeat Simple_repeat 1 52 0 207 0 0 0 chr4 103487363 103487386 -98840961 + (GA)n Simple_repeat Simple_repeat 1 23 0 1139 211 176 15 chr4 103488365 103488706 -98839641 + MSTD LTR MaLR 1 396 0 2093 107 31 10 chr4 103488819 103489110 -98839237 - AluSx SINE Alu -15 297 1 22 56 0 0 chr4 103489309 103489345 -98839002 + AT_rich Low_complexity Low_complexity 1 36 0 2732 199 34 0 chr4 103489475 103490007 -98838340 - MER68 LTR ERV1 -6 556 7 2082 127 3 3 chr4 103490189 103490481 -98837866 + AluSp SINE Alu 1 292 -21 1183 282 35 14 chr4 103490504 103490873 -98837474 + L2 LINE L2 2283 2659 -655 2230 125 0 6 chr4 103490919 103491232 -98837115 - AluY SINE Alu 0 311 1 357 214 48 71 chr4 103491263 103491389 -98836958 + MLT1J LTR MaLR 76 198 -313 867 315 95 34 chr4 103491653 103492261 -98836086 + L2 LINE L2 2656 3308 -5 2284 105 3 0 chr4 103492336 103492640 -98835707 - AluSp SINE Alu -8 305 1 884 286 112 14 chr4 103492723 103493079 -98835268 - MLT1L LTR MaLR -221 394 4 21 0 0 0 chr4 103493111 103493132 -98835215 + AT_rich Low_complexity Low_complexity 1 21 0 327 252 84 32 chr4 103493218 103493373 -98834974 - MLT1L LTR MaLR 0 615 453 260 282 168 13 chr4 103493514 103493663 -98834684 - MLT1J LTR MaLR -331 180 9 337 329 93 6 chr4 103493921 103494082 -98834265 + MIR SINE MIR 73 247 -15 1631 189 11 11 chr4 103494095 103494414 -98833933 + AluJb SINE Alu 4 322 0 657 311 33 25 chr4 103494502 103494746 -98833601 - MIR SINE MIR -12 250 5 236 396 55 27 chr4 103495548 103495883 -98832464 - L2 LINE L2 -215 3057 2715 263 287 53 0 chr4 103495915 103496065 -98832282 - L1M4c LINE L1 -3719 2663 2506 2257 97 3 0 chr4 103496114 103496402 -98831945 - AluSx SINE Alu -23 289 1 442 258 129 52 chr4 103496403 103496636 -98831711 - L1M4c LINE L1 -4089 2474 2224 924 213 4 52 chr4 103496636 103496866 -98831481 - MER20 DNA MER1_type 0 219 1 402 199 89 16 chr4 103496867 103497001 -98831346 + MER33 DNA MER1_type 1 132 -97 186 43 0 0 chr4 103497077 103497100 -98831247 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1246 177 26 116 chr4 103497103 103497413 -98830934 - AluJo SINE Alu -30 282 1 332 271 34 17 chr4 103497469 103497646 -98830701 - L1M4c LINE L1 -4573 1990 1811 2043 224 93 7 chr4 103497649 103498251 -98830096 - L1ME3 LINE L1 -52 6110 5457 23 33 0 0 chr4 103498344 103498374 -98829973 + AT_rich Low_complexity Low_complexity 1 30 0 289 285 26 13 chr4 103498405 103498556 -98829791 - L1ME3 LINE L1 -1013 5133 4981 * 578 315 71 20 chr4 103498537 103499197 -98829150 - L1M4c LINE L1 -4750 1813 1046 1768 194 0 7 chr4 103499225 103499535 -98828812 + AluJo SINE Alu 1 308 -4 2006 120 45 0 chr4 103499586 103499877 -98828470 - AluSg SINE Alu -6 304 1 895 213 24 0 chr4 103499906 103500070 -98828277 - AluJo SINE Alu -144 168 1 25 31 0 0 chr4 103500298 103500330 -98828017 + AT_rich Low_complexity Low_complexity 1 32 0 881 136 0 0 chr4 103500330 103500455 -98827892 - FLAM_C SINE Alu -18 125 1 2315 104 7 0 chr4 103500669 103500976 -98827371 - AluSp SINE Alu -4 309 1 2896 154 30 48 chr4 103501268 103501891 -98826456 - LTR10E LTR ERV1 -21 612 1 276 180 22 79 chr4 103501894 103501983 -98826364 + MER72-int LTR ERV1 6260 6343 -415 1599 198 44 11 chr4 103502061 103502424 -98825923 + MER72-int LTR ERV1 6384 6758 0 3431 148 74 24 chr4 103502424 103503085 -98825262 + MER72 LTR ERV1 1 694 -28 435 313 60 74 chr4 103503271 103503429 -98824918 - L2 LINE L2 -775 2539 2380 1950 152 7 3 chr4 103503429 103503731 -98824616 + AluJb SINE Alu 1 303 -9 435 313 60 74 chr4 103503731 103504019 -98824328 - L2 LINE L2 -934 2380 2099 798 341 0 0 chr4 103504320 103504549 -98823798 + MIR SINE MIR 23 251 -11 24 0 0 0 chr4 103505367 103505391 -98822956 + AT_rich Low_complexity Low_complexity 1 24 0 1989 212 63 37 chr4 103505680 103506171 -98822176 - MLT1D LTR MaLR -1 504 1 600 291 55 55 chr4 103506189 103506443 -98821904 - MLT1K LTR MaLR -314 274 21 225 0 0 0 chr4 103506460 103506485 -98821862 + (A)n Simple_repeat Simple_repeat 1 25 0 374 341 8 23 chr4 103506640 103506769 -98821578 + MIR SINE MIR 19 145 -117 401 286 25 70 chr4 103506789 103506988 -98821359 + LTR67 LTR ERVL 4 193 -364 443 266 11 49 chr4 103507223 103507407 -98820940 + LTR67 LTR ERVL 352 528 -29 2648 48 0 0 chr4 103507428 103507738 -98820609 + AluY SINE Alu 1 310 -1 387 120 103 94 chr4 103508306 103508382 -98819965 + MLT1C LTR MaLR 6 85 -382 2366 99 0 10 chr4 103508382 103508695 -98819652 + AluSg SINE Alu 1 310 0 387 120 103 94 chr4 103508695 103508735 -98819612 + MLT1C LTR MaLR 85 123 -344 180 0 0 0 chr4 103508947 103508967 -98819380 + (TC)n Simple_repeat Simple_repeat 2 21 0 2638 161 37 35 chr4 103508969 103509516 -98818831 + MER89 LTR ERV1 12 559 0 467 317 40 35 chr4 103509526 103509728 -98818619 + LTR16C LTR ERVL 280 482 -9 30 0 0 0 chr4 103509993 103510023 -98818324 + AT_rich Low_complexity Low_complexity 1 30 0 1702 180 156 33 chr4 103510029 103510517 -98817830 + LTR10A LTR ERV1 1 548 -61 2292 100 3 0 chr4 103512430 103512739 -98815608 + AluSp SINE Alu 1 310 -3 508 292 104 64 chr4 103513053 103513618 -98814729 + L1MC4a LINE L1 4357 4944 -1202 1000 271 57 21 chr4 103514182 103514218 -98814129 - L2 LINE L2 -121 3192 3159 1139 150 72 14 chr4 103514218 103514425 -98813922 - MER20 DNA MER1_type 0 219 1 1000 271 57 21 chr4 103514425 103514858 -98813489 - L2 LINE L2 -154 3159 2707 388 292 60 26 chr4 103514870 103515103 -98813244 + L1MC4a LINE L1 5351 5591 -2217 327 78 0 0 chr4 103515103 103515154 -98813193 + (TC)n Simple_repeat Simple_repeat 2 52 0 1675 173 17 7 chr4 103515174 103515469 -98812878 - AluJb SINE Alu -14 298 1 1895 161 14 0 chr4 103515476 103515767 -98812580 - AluJo SINE Alu -17 295 1 919 194 0 0 chr4 103515812 103515972 -98812375 + AluJb SINE Alu 136 295 -17 353 272 91 30 chr4 103515972 103516237 -98812110 + L1MC4a LINE L1 5615 5895 -1913 200 56 83 0 chr4 103516468 103516504 -98811843 + T-rich Low_complexity Low_complexity 3 41 0 23 33 0 0 chr4 103516555 103516585 -98811762 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr4 103516737 103516771 -98811576 + AT_rich Low_complexity Low_complexity 1 34 0 1953 148 10 10 chr4 103517210 103517521 -98810826 - AluJo SINE Alu -1 311 1 48 32 0 0 chr4 103518753 103518815 -98809532 + AT_rich Low_complexity Low_complexity 1 62 0 265 159 0 0 chr4 103519049 103519093 -98809254 + MER57A LTR ERV1 293 336 -67 183 80 0 0 chr4 103519093 103519118 -98809229 + (A)n Simple_repeat Simple_repeat 1 25 0 1718 166 0 59 chr4 103519298 103519467 -98808880 - AluJb SINE Alu -23 289 112 216 0 0 0 chr4 103519467 103519491 -98808856 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2156 95 0 11 chr4 103519491 103519775 -98808572 - AluSg SINE Alu -29 281 1 1718 166 0 59 chr4 103519775 103519911 -98808436 - AluJb SINE Alu -198 114 1 2455 48 10 0 chr4 103519976 103520271 -98808076 - AluY SINE Alu -13 298 1 510 97 14 0 chr4 103520379 103520451 -98807896 + AluJ/FRAM SINE Alu 216 288 -24 370 372 59 21 chr4 103520856 103521195 -98807152 - L2 LINE L2 -523 2791 2440 327 274 68 34 chr4 103521385 103521502 -98806845 + MER91C DNA MER1_type 20 140 0 1683 211 62 24 chr4 103521804 103522254 -98806093 - MLT1C LTR MaLR 0 467 1 1812 133 3 88 chr4 103523220 103523364 -98804983 + AluSq SINE Alu 1 103 -210 2386 87 3 0 chr4 103523364 103523664 -98804683 + AluSp SINE Alu 1 301 -12 1812 133 3 88 chr4 103523664 103523850 -98804497 + AluSq SINE Alu 103 303 -10 1107 179 0 0 chr4 103523850 103524018 -98804329 + FRAM SINE Alu 1 165 -11 274 309 102 81 chr4 103524093 103524269 -98804078 - L2 LINE L2 -222 3050 2866 1907 141 41 0 chr4 103524269 103524559 -98803788 + AluSx SINE Alu 1 302 -10 274 309 102 81 chr4 103524559 103524618 -98803729 - L2 LINE L2 -406 2866 2810 1968 134 21 0 chr4 103525169 103525459 -98802888 + AluSx SINE Alu 1 296 -16 620 252 52 70 chr4 103525485 103525771 -98802576 - L2 LINE L2 -864 2450 2170 1513 211 61 23 chr4 103526125 103526778 -98801569 - MER20B DNA MER1_type -40 743 2 187 406 30 44 chr4 103526934 103527232 -98801115 - L2 LINE L2 -689 2625 2332 268 279 197 0 chr4 103527273 103527395 -98800952 - L2 LINE L2 0 3272 3127 2003 161 0 3 chr4 103527874 103528179 -98800168 + AluJb SINE Alu 2 305 -7 21 57 0 0 chr4 103528811 103528846 -98799501 + AT_rich Low_complexity Low_complexity 1 35 0 2229 97 3 0 chr4 103528848 103529137 -98799210 + AluSx SINE Alu 1 290 -22 2362 75 17 0 chr4 103529139 103529267 -98799080 + AluSx SINE Alu 1 125 -187 189 0 0 0 chr4 103529267 103529288 -98799059 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2362 75 17 0 chr4 103529288 103529453 -98798894 + AluSx SINE Alu 125 299 -13 2136 84 64 17 chr4 103530883 103531179 -98797168 - AluY SINE Alu -1 310 1 268 235 31 0 chr4 103531534 103531632 -98796715 - L1M4 LINE L1 -842 5304 5204 1903 202 58 18 chr4 103531959 103532409 -98795938 + MLT1D LTR MaLR 26 493 -12 * 2519 151 31 29 chr4 103532400 103532856 -98795491 + LTR32 LTR ERVL 13 469 -2 1864 183 0 0 chr4 103533196 103533486 -98794861 - AluJo SINE Alu -20 292 3 297 0 0 0 chr4 103534459 103534492 -98793855 + (TG)n Simple_repeat Simple_repeat 2 34 0 1926 162 0 0 chr4 103534724 103535008 -98793339 + AluSx SINE Alu 1 332 0 384 0 0 21 chr4 103535008 103535056 -98793291 + (TAAA)n Simple_repeat Simple_repeat 2 84 0 2105 245 30 15 chr4 103535083 103535617 -98792730 + L1ME1 LINE L1 5514 6055 -111 250 220 17 0 chr4 103535624 103535683 -98792664 + L1ME1 LINE L1 6101 6160 -6 434 314 126 0 chr4 103535687 103535964 -98792383 + HAL1 LINE L1 1406 1717 -790 26 30 0 0 chr4 103536013 103536046 -98792301 + AT_rich Low_complexity Low_complexity 1 33 0 1182 133 6 6 chr4 103536077 103536285 -98792062 + AluSq SINE Alu 103 310 0 626 311 114 27 chr4 103536660 103537185 -98791162 + L1ME LINE L1 2176 2746 -3400 729 272 76 47 chr4 103537187 103537500 -98790847 + L1ME LINE L1 2798 3125 -3021 2253 82 6 35 chr4 103537500 103537815 -98790532 + AluSp SINE Alu 1 306 -7 729 272 76 47 chr4 103537815 103537883 -98790464 + L1ME LINE L1 3125 3190 -2956 747 279 76 28 chr4 103538087 103538358 -98789989 + L1ME LINE L1 4463 4720 -1426 2491 50 0 3 chr4 103538358 103538655 -98789692 - AluY SINE Alu -14 297 2 747 279 76 28 chr4 103538655 103538882 -98789465 + L1ME LINE L1 4720 4985 -1161 444 250 53 13 chr4 103539415 103539580 -98788767 + L1ME LINE L1 5593 5752 -426 * 494 267 78 31 chr4 103539558 103539813 -98788534 + L1ME3A LINE L1 5681 5947 -223 465 232 288 9 chr4 103539948 103540194 -98788153 - MLT1J LTR MaLR -120 341 78 332 239 146 8 chr4 103540405 103540535 -98787812 + L1MC4 LINE L1 7893 8040 -2 1594 157 28 24 chr4 103540743 103541030 -98787317 - AluJb SINE Alu -24 288 1 660 250 242 4 chr4 103541996 103542256 -98786091 + MER5C DNA MER1_type 1 322 -2 375 273 54 41 chr4 103542361 103542555 -98785792 - MIR SINE MIR -51 211 18 875 181 46 97 chr4 103542867 103543126 -98785221 - L1MA4 LINE L1 -4 6296 6051 960 211 67 0 chr4 103543157 103543351 -98784996 - MER3 DNA MER1_type -2 207 1 326 221 47 23 chr4 103545171 103545257 -98783090 - Charlie8 DNA MER1_type -2327 90 3 1033 236 162 56 chr4 103546023 103546523 -98781824 + LTR67 LTR ERVL 5 557 0 355 289 55 8 chr4 103546677 103546805 -98781542 + L2 LINE L2 1867 2000 -1314 206 231 108 0 chr4 103546863 103546928 -98781419 + L2 LINE L2 3201 3272 0 852 253 18 18 chr4 103547541 103547762 -98780585 + MER58A DNA MER1_type 3 223 -1 207 0 0 0 chr4 103548167 103548190 -98780157 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2103 62 25 14 chr4 103548192 103548468 -98779879 - AluSg SINE Alu -31 279 1 2218 80 3 3 chr4 103548757 103549043 -98779304 + AluSc SINE Alu 2 287 -22 450 362 130 17 chr4 103549065 103549479 -98778868 + L2 LINE L2 2397 2857 -457 2686 175 9 41 chr4 103550113 103550678 -98777669 + MER44D DNA MER2_type 4 605 0 22 56 0 0 chr4 103550989 103551025 -98777322 + AT_rich Low_complexity Low_complexity 1 36 0 1180 306 145 39 chr4 103551089 103551542 -98776805 - L2 LINE L2 -40 3273 2869 2242 175 70 8 chr4 103551542 103551943 -98776404 - MSTB LTR MaLR 0 426 1 1180 306 145 39 chr4 103551943 103552244 -98776103 - L2 LINE L2 -444 2869 2601 2068 133 7 0 chr4 103552244 103552537 -98775810 + AluSq SINE Alu 1 295 -18 1180 306 145 39 chr4 103552537 103552858 -98775489 - L2 LINE L2 -712 2601 2088 2487 78 3 0 chr4 103553690 103553996 -98774351 + AluSc SINE Alu 1 307 -2 3752 199 77 44 chr4 103554527 103555564 -98772783 + Charlie7 DNA MER1_type 1427 2507 -105 2027 131 0 3 chr4 103555564 103555854 -98772493 - AluSx SINE Alu -23 289 1 3752 199 77 44 chr4 103555854 103555964 -98772383 + Charlie7 DNA MER1_type 2507 2612 0 200 392 77 5 chr4 103555972 103556166 -98772181 + L2 LINE L2 97 304 -3010 1167 232 121 94 chr4 103556166 103556437 -98771910 + MLT1H1 LTR MaLR 1 263 -292 180 0 0 0 chr4 103556437 103556457 -98771890 + (GA)n Simple_repeat Simple_repeat 1 20 0 1167 232 121 94 chr4 103556457 103556706 -98771641 + MLT1H1 LTR MaLR 263 548 -7 313 302 54 34 chr4 103556706 103556855 -98771492 + L2 LINE L2 297 448 -2866 417 312 197 0 chr4 103556863 103557081 -98771266 + L2 LINE L2 691 951 -2363 841 330 167 20 chr4 103557090 103557772 -98770575 + L2 LINE L2 1171 1952 -1362 628 356 101 10 chr4 103557772 103558157 -98770190 + L2 LINE L2 2386 2805 -509 881 304 98 34 chr4 103558685 103559162 -98769185 + L2 LINE L2 2806 3313 0 2406 76 0 0 chr4 103559414 103559717 -98768630 + AluY SINE Alu 1 303 -8 200 172 17 35 chr4 103559884 103559942 -98768405 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 2402 158 67 45 chr4 103559994 103560488 -98767859 + MLT1D LTR MaLR 1 505 0 617 196 47 47 chr4 103560908 103561056 -98767291 - Tigger2 DNA MER2_type 0 2718 2571 295 232 0 0 chr4 103561076 103561132 -98767215 - Tigger2 DNA MER2_type -2662 56 1 312 361 14 28 chr4 103561392 103561536 -98766811 + MIR3 SINE MIR 3 144 -64 197 268 31 126 chr4 103561877 103562004 -98766343 - MIR SINE MIR -67 141 27 274 317 79 12 chr4 103562518 103562682 -98765665 + MIR SINE MIR 28 202 -60 488 322 126 58 chr4 103562707 103563325 -98765022 + L2 LINE L2 2485 3156 -116 2342 101 7 0 chr4 103563411 103563719 -98764628 + AluSg SINE Alu 1 310 0 31 58 0 0 chr4 103563731 103563783 -98764564 + AT_rich Low_complexity Low_complexity 1 52 0 2372 99 0 6 chr4 103563993 103564306 -98764041 - AluSx SINE Alu -1 311 1 2561 59 3 0 chr4 103564532 103564839 -98763508 - AluY SINE Alu -3 308 1 600 231 0 0 chr4 103565722 103565839 -98762508 - FLAM_C SINE Alu -15 118 2 708 291 79 14 chr4 103565839 103566117 -98762230 - L2 LINE L2 -15 3298 3003 2135 116 3 31 chr4 103566741 103567059 -98761288 - AluSx SINE Alu -3 309 1 375 82 0 33 chr4 103567059 103567120 -98761227 - AluSg/x SINE Alu -161 139 81 2036 154 106 8 chr4 103567122 103567518 -98760829 + MLT1C LTR MaLR 30 464 -3 241 126 58 48 chr4 103568977 103569081 -98759266 + (CCGCG)n Simple_repeat Simple_repeat 1 105 0 21 57 0 0 chr4 103569451 103569486 -98758861 + GC_rich Low_complexity Low_complexity 1 35 0 2130 61 0 19 chr4 103571813 103572076 -98756271 + AluSq SINE Alu 34 291 -22 258 339 97 48 chr4 103572565 103572875 -98755472 - L2 LINE L2 -430 2884 2560 244 267 95 38 chr4 103573067 103573172 -98755175 + L2 LINE L2 3202 3312 -1 44 35 0 0 chr4 103573752 103573810 -98754537 + AT_rich Low_complexity Low_complexity 1 58 0 1057 159 24 5 chr4 103574775 103574983 -98753364 - L1 LINE L1 -2376 3770 3559 4645 110 4 52 chr4 103574987 103575762 -98752585 - L1PA16 LINE L1 -9 6157 5420 7696 169 23 21 chr4 103575766 103577307 -98751040 + L1 LINE L1 3766 5309 -837 1336 145 34 26 chr4 103577312 103577546 -98750801 + MER46A DNA MER2_type 1 236 0 1065 195 66 71 chr4 103577593 103577957 -98750390 - MLT1A1 LTR MaLR 0 365 4 394 151 0 55 chr4 103578338 103578411 -98749936 + Tigger2 DNA MER2_type 1 69 -2649 * 2158 117 99 56 chr4 103578401 103578827 -98749520 + Tigger2 DNA MER2_type 2273 2716 -2 1338 200 150 5 chr4 103579011 103579391 -98748956 + MER63B DNA MER1_type 2 436 0 335 213 181 52 chr4 103579396 103579551 -98748796 - MIR SINE MIR -4 258 84 698 175 63 21 chr4 103579579 103579722 -98748625 - MER5A DNA MER1_type 0 189 41 465 247 0 0 chr4 103579749 103579838 -98748509 - Cheshire DNA MER1_type 0 2420 2332 7672 92 18 22 chr4 103579838 103581044 -98747303 - HSMAR1 DNA Mariner 0 1287 1 7461 195 110 56 chr4 103581066 103582689 -98745658 - Cheshire DNA MER1_type -105 2315 549 327 25 0 0 chr4 103582689 103582729 -98745618 + (TG)n Simple_repeat Simple_repeat 1 40 0 7461 195 110 56 chr4 103582729 103583236 -98745111 - Cheshire DNA MER1_type -1871 549 71 192 279 63 45 chr4 103583350 103583461 -98744886 + L2 LINE L2 2353 2465 -849 2011 189 6 6 chr4 103583648 103584013 -98744334 - MLT1A1 LTR MaLR 0 365 1 707 282 92 53 chr4 103584160 103584540 -98743807 - Charlie8 DNA MER1_type -1924 493 99 317 326 34 56 chr4 103584566 103584744 -98743603 - MIR3 SINE MIR -19 189 16 1492 146 108 0 chr4 103585623 103585883 -98742464 + AluSx SINE Alu 9 296 -16 26 50 0 0 chr4 103586085 103586125 -98742222 + AT_rich Low_complexity Low_complexity 1 40 0 217 290 26 24 chr4 103586242 103586335 -98742012 + MIR SINE MIR 36 126 -93 2340 70 0 7 chr4 103586611 103586919 -98741428 + AluY SINE Alu 1 306 0 44 56 0 0 chr4 103587037 103587109 -98741238 + AT_rich Low_complexity Low_complexity 1 72 0 20459 51 1 5 chr4 103587297 103590678 -98737669 - L1PA6 LINE L1 -17 6137 2764 200 342 25 25 chr4 103591384 103591463 -98736884 - L2 LINE L2 -2 3270 3192 336 304 137 30 chr4 103591703 103591871 -98736476 + MIR SINE MIR 20 205 -57 835 96 27 48 chr4 103591898 103592044 -98736303 - L1PA16 LINE L1 -6 6160 6018 1612 237 72 59 chr4 103592193 103592782 -98735565 + MLT1G LTR MaLR 2 568 -22 27 18 0 70 chr4 103593431 103593488 -98734859 + AT_rich Low_complexity Low_complexity 1 53 0 181 49 49 86 chr4 103593488 103593569 -98734778 + (TAAA)n Simple_repeat Simple_repeat 3 80 0 49 18 0 0 chr4 103593570 103593626 -98734721 + AT_rich Low_complexity Low_complexity 1 56 0 1674 185 7 3 chr4 103593654 103593952 -98734395 + AluJo SINE Alu 1 299 -13 2386 97 0 3 chr4 103594273 103594583 -98733764 + AluSq SINE Alu 1 309 -4 6762 40 0 1 chr4 103595700 103596527 -98731820 - L1PA4 LINE L1 0 6155 5330 275 125 25 0 chr4 103596634 103596674 -98731673 - Tigger7 DNA MER2_type 0 2487 2447 231 88 0 0 chr4 103597220 103597254 -98731093 + (A)n Simple_repeat Simple_repeat 1 34 0 343 309 194 23 chr4 103598573 103598877 -98729470 - L2 LINE L2 -1155 2159 1804 1977 173 47 39 chr4 103599538 103599786 -98728561 + Charlie1 DNA MER1_type 2226 2471 -290 1740 175 0 29 chr4 103599786 103600101 -98728246 - AluJo SINE Alu -4 308 3 1977 173 47 39 chr4 103600101 103600125 -98728222 + Charlie1 DNA MER1_type 2471 2493 -268 735 131 33 0 chr4 103600125 103600247 -98728100 + L1PA7 LINE L1 6029 6154 0 1977 173 47 39 chr4 103600247 103600483 -98727864 + Charlie1 DNA MER1_type 2493 2739 -22 583 233 132 0 chr4 103602294 103602453 -98725894 - MER3 DNA MER1_type -29 180 1 313 283 88 0 chr4 103603141 103603254 -98725093 - MIR SINE MIR -20 242 120 300 27 0 0 chr4 103603699 103603736 -98724611 + (CAA)n Simple_repeat Simple_repeat 2 38 0 2530 150 28 28 chr4 103605001 103605468 -98722879 + Tigger1 DNA MER2_type 2 468 -1950 185 222 0 22 chr4 103605749 103605794 -98722553 - L2 LINE L2 -2627 687 644 10355 122 48 27 chr4 103606315 103607896 -98720451 + Tigger1 DNA MER2_type 2 1626 -792 3860 60 2 0 chr4 103607896 103608381 -98719966 - L1PA6 LINE L1 -4 6150 5665 10355 122 48 27 chr4 103608381 103608592 -98719755 + Tigger1 DNA MER2_type 1626 1831 -587 2025 95 0 0 chr4 103608592 103608854 -98719493 - AluY SINE Alu 0 311 50 3977 103 18 14 chr4 103610003 103610576 -98717771 - LTR8 LTR ERV1 -116 575 1 27077 135 37 57 chr4 103610576 103610969 -98717378 - HUERS-P1 LTR ERV1 0 6263 5864 185 0 40 0 chr4 103610969 103610994 -98717353 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 27077 135 37 57 chr4 103610994 103611233 -98717114 - HUERS-P1 LTR ERV1 -399 5864 5622 2197 98 3 17 chr4 103611233 103611530 -98716817 - AluSx SINE Alu -19 293 1 27077 135 37 57 chr4 103611530 103612949 -98715398 - HUERS-P1 LTR ERV1 -641 5622 4176 2071 114 7 0 chr4 103612949 103613274 -98715073 + AluSx SINE Alu 2 328 0 27077 135 37 57 chr4 103613274 103614277 -98714070 - HUERS-P1 LTR ERV1 -2087 4176 3154 2255 103 3 13 chr4 103614277 103614588 -98713759 - AluSp SINE Alu -5 308 1 27077 135 37 57 chr4 103614588 103616278 -98712069 - HUERS-P1 LTR ERV1 -3109 3154 1432 276 53 0 0 chr4 103616278 103616316 -98712031 + (CA)n Simple_repeat Simple_repeat 2 39 0 240 35 0 0 chr4 103616316 103616345 -98712002 + (GA)n Simple_repeat Simple_repeat 1 29 0 27077 135 37 57 chr4 103616345 103617561 -98710786 - HUERS-P1 LTR ERV1 -4829 1434 86 1942 166 12 63 chr4 103617659 103618070 -98710277 - MLT1B LTR MaLR 0 390 1 214 248 40 20 chr4 103618305 103618406 -98709941 + (TATTG)n Simple_repeat Simple_repeat 2 104 0 664 120 11 0 chr4 103618521 103618613 -98709734 - HUERS-P1 LTR ERV1 -6170 93 1 1104 98 14 0 chr4 103618613 103618756 -98709591 - LTR8 LTR ERV1 0 691 547 1884 166 0 3 chr4 103618764 103619066 -98709281 - AluJo SINE Alu -11 301 1 209 276 81 0 chr4 103619074 103619161 -98709186 + L2 LINE L2 2199 2292 -1022 223 302 0 0 chr4 103619651 103619704 -98708643 + L2 LINE L2 3134 3186 -86 1967 161 12 66 chr4 103619714 103620124 -98708223 + MLT1B LTR MaLR 3 390 0 471 328 17 6 chr4 103620622 103620796 -98707551 - MIR SINE MIR -14 248 73 342 240 32 14 chr4 103620910 103621048 -98707299 - MLT1L LTR MaLR -3 611 447 328 194 0 14 chr4 103621335 103621407 -98706940 - MLT1E3 LTR MaLR 0 624 554 21 36 0 0 chr4 103621538 103621566 -98706781 + AT_rich Low_complexity Low_complexity 1 28 0 497 303 111 5 chr4 103623281 103623479 -98704868 - MIR SINE MIR -16 246 28 3556 131 32 86 chr4 103624004 103624103 -98704244 + Tigger1 DNA MER2_type 1734 1837 -581 1868 144 47 7 chr4 103624103 103624401 -98703946 - AluSg SINE Alu 0 310 1 3556 131 32 86 chr4 103624401 103624885 -98703462 + Tigger1 DNA MER2_type 1837 2273 -145 2164 117 0 3 chr4 103624885 103625183 -98703164 - AluSx SINE Alu -15 297 1 3556 131 32 86 chr4 103625183 103625321 -98703026 + Tigger1 DNA MER2_type 2273 2417 -1 559 300 88 48 chr4 103626927 103627246 -98701101 + HAL1b LINE L1 83 431 -917 2173 138 0 0 chr4 103627246 103627558 -98700789 + AluSx SINE Alu 1 312 0 559 300 88 48 chr4 103627558 103627741 -98700606 + HAL1b LINE L1 431 605 -743 772 210 11 17 chr4 103627742 103627934 -98700413 + MER33 DNA MER1_type 1 178 -97 360 0 0 0 chr4 103628110 103628150 -98700197 + (TATAA)n Simple_repeat Simple_repeat 2 41 0 6492 77 35 9 chr4 103628189 103629852 -98698495 - L1PA10 LINE L1 -13 6155 4459 1167 189 101 96 chr4 103630669 103631024 -98697323 - MLT1A1 LTR MaLR -8 357 1 25 65 0 0 chr4 103631540 103631586 -98696761 + AT_rich Low_complexity Low_complexity 1 46 0 327 266 130 35 chr4 103631724 103632148 -98696199 - L1M4 LINE L1 -1320 4826 4363 256 315 30 24 chr4 103632327 103632492 -98695855 - L1M4 LINE L1 -1998 4148 3983 649 215 0 8 chr4 103632497 103632627 -98695720 + AluJo SINE Alu 1 129 -183 363 154 0 0 chr4 103632631 103632696 -98695651 + (TG)n Simple_repeat Simple_repeat 2 66 0 313 296 11 0 chr4 103632727 103632815 -98695532 - L1MC4 LINE L1 -1340 6702 6614 782 223 70 0 chr4 103632821 103632978 -98695369 + AluJo SINE Alu 137 304 -8 28 71 0 0 chr4 103633624 103633680 -98694667 + AT_rich Low_complexity Low_complexity 1 56 0 183 80 0 0 chr4 103634361 103634386 -98693961 + (TA)n Simple_repeat Simple_repeat 2 26 0 210 151 132 57 chr4 103634668 103634721 -98693626 - L2 LINE L2 0 3313 3257 243 139 0 0 chr4 103634830 103634866 -98693481 - U2 snRNA snRNA -152 36 1 539 176 142 19 chr4 103635184 103635426 -98692921 + MER33 DNA MER1_type 1 320 -4 714 276 22 0 chr4 103635439 103635620 -98692727 - MER5A DNA MER1_type -1 188 4 180 200 0 0 chr4 103636094 103636134 -98692213 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 1472 196 7 14 chr4 103636137 103636417 -98691930 - AluJo SINE Alu -26 286 9 257 360 84 17 chr4 103636788 103636966 -98691381 - L3 LINE CR1 -156 1421 1232 261 150 0 0 chr4 103637129 103637169 -98691178 - MLT2D LTR ERVL -8 389 350 233 283 0 0 chr4 103637170 103637230 -98691117 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 1432 216 52 31 chr4 103637233 103637274 -98691073 - MLT2D LTR ERVL -20 394 355 2404 94 0 0 chr4 103637274 103637583 -98690764 + AluY SINE Alu 1 309 -2 1432 216 52 31 chr4 103637583 103637925 -98690422 - MLT2D LTR ERVL -59 355 3 1780 164 0 10 chr4 103638047 103638340 -98690007 + AluJb SINE Alu 1 290 -22 196 414 50 0 chr4 103639705 103639804 -98688543 + L2 LINE L2 3107 3210 -62 207 203 62 16 chr4 103639827 103639891 -98688456 + L2 LINE L2 2166 2232 -1082 254 375 34 24 chr4 103640020 103640223 -98688124 - L2 LINE L2 -299 2973 2768 2282 119 0 3 chr4 103642315 103642626 -98685721 - AluSx SINE Alu 0 312 3 3625 159 27 58 chr4 103642751 103643463 -98684884 - MER44D DNA MER2_type -15 690 1 304 367 108 7 chr4 103643592 103643731 -98684616 + L2 LINE L2 3116 3268 -4 2136 136 7 0 chr4 103643984 103644293 -98684054 + AluSx SINE Alu 1 311 -1 296 152 0 0 chr4 103644298 103644344 -98684003 + Tigger2 DNA MER2_type 24 69 -2649 * 2344 117 61 5 chr4 103644334 103644710 -98683637 + Tigger2 DNA MER2_type 2273 2669 -49 839 20 0 0 chr4 103644917 103645015 -98683332 + L1PA2 LINE L1 1 98 -6048 * 37604 31 27 1 chr4 103644984 103650417 -98677930 + L1PA2 LINE L1 580 6153 -2 2280 119 67 44 chr4 103651672 103652102 -98676245 - MER65A LTR ERV1 -1 444 5 3571 211 116 133 chr4 103652105 103653180 -98675167 - MER65A-int LTR ERV1 0 5094 4002 701 111 0 0 chr4 103653180 103653279 -98675068 - AluSg/x SINE Alu -24 288 190 3571 211 116 133 chr4 103653279 103653993 -98674354 - MER65A-int LTR ERV1 -1092 4002 3277 2319 105 0 3 chr4 103653993 103654297 -98674050 + AluSg SINE Alu 1 303 -7 3571 211 116 133 chr4 103654297 103654348 -98673999 - MER65A-int LTR ERV1 -1817 3277 3227 277 169 17 0 chr4 103654348 103654407 -98673940 - L1MC4a LINE L1 -1818 5990 5931 7817 67 87 125 chr4 103654407 103655846 -98672501 - SVA Other Other -2 1384 1 3571 211 116 133 chr4 103655846 103656698 -98671649 - MER65A-int LTR ERV1 -1865 3229 2493 657 169 50 80 chr4 103656781 103656982 -98671365 - MER65-int LTR ERV1 -2868 3730 3536 1550 168 68 87 chr4 103657218 103657952 -98670395 - MER65-int LTR ERV1 -4351 2407 1516 * 2965 191 65 34 chr4 103657920 103658759 -98669588 - MER65-int LTR ERV1 -2346 2525 1747 * 3352 209 45 57 chr4 103658748 103659756 -98668591 - MER65-int LTR ERV1 -3286 1585 590 1270 121 76 48 chr4 103659756 103660005 -98668342 - MER65A LTR ERV1 -187 258 3 270 261 104 30 chr4 103660433 103660567 -98667780 - MER103 DNA DNA -20 146 3 2130 113 3 0 chr4 103661360 103661679 -98666668 - AluSq SINE Alu 0 323 4 263 326 191 52 chr4 103662198 103662932 -98665415 - L2 LINE L2 -268 3004 2174 1466 130 5 0 chr4 103664258 103664481 -98663866 + L1P4 LINE L1 5450 5673 -492 4271 104 26 69 chr4 103664481 103664942 -98663405 + L1PA15 LINE L1 5440 5873 -292 1831 149 0 45 chr4 103664942 103665250 -98663097 + AluSx SINE Alu 2 295 -17 4271 104 26 69 chr4 103665250 103665532 -98662815 + L1PA15 LINE L1 5873 6165 0 297 260 45 102 chr4 103666333 103666598 -98661749 + MER112 DNA MER1_type 1 250 -10 23 0 0 0 chr4 103668072 103668095 -98660252 + AT_rich Low_complexity Low_complexity 1 23 0 1911 147 3 29 chr4 103669308 103669621 -98658726 - AluJb SINE Alu -7 305 1 713 171 48 64 chr4 103670452 103670639 -98657708 + MER5A DNA MER1_type 4 187 -2 2236 80 35 3 chr4 103671043 103671332 -98657015 - AluSg SINE Alu -12 298 1 7194 49 0 1 chr4 103672490 103673383 -98654964 - L1PA5 LINE L1 -1 6153 5262 398 280 11 0 chr4 103673488 103673581 -98654766 + Tigger2 DNA MER2_type 2622 2715 -3 858 130 58 32 chr4 103673582 103673736 -98654611 - MER46A DNA MER2_type -73 163 6 2254 99 0 3 chr4 103674195 103674489 -98653858 - AluSg SINE Alu -17 293 1 332 241 0 13 chr4 103674823 103674902 -98653445 + L1ME LINE L1 5603 5680 -441 6555 64 22 0 chr4 103674931 103676154 -98652193 + L1PA7 LINE L1 4891 6134 -20 1777 136 52 73 chr4 103676218 103676601 -98651746 - THE1C LTR MaLR 0 375 1 698 200 0 0 chr4 103676639 103676779 -98651568 - Charlie1 DNA MER1_type 0 2761 2622 584 204 92 41 chr4 103676765 103676961 -98651386 - Charlie1 DNA MER1_type -2522 239 34 * 763 166 0 41 chr4 103677180 103677235 -98651112 - FLAM_C SINE Alu -173 139 83 3431 73 9 0 chr4 103677235 103677675 -98650672 + MLT2A1 LTR ERVL 1 444 0 763 166 0 41 chr4 103677675 103677764 -98650583 - FLAM_C SINE Alu -229 83 1 470 280 40 8 chr4 103677964 103678089 -98650258 + MER5A DNA MER1_type 8 136 -53 7959 44 1 0 chr4 103678384 103679381 -98648966 - L1P LINE L1 -840 5306 4309 1500 192 0 52 chr4 103679996 103680127 -98648220 + AluJo SINE Alu 3 139 -173 2173 114 0 0 chr4 103680127 103680416 -98647931 + AluSg SINE Alu 1 289 -21 1500 192 0 52 chr4 103680416 103680591 -98647756 + AluJo SINE Alu 139 293 -19 219 152 0 0 chr4 103681556 103681602 -98646745 + (TA)n Simple_repeat Simple_repeat 1 46 0 23 33 0 0 chr4 103683461 103683491 -98644856 + AT_rich Low_complexity Low_complexity 1 30 0 2741 16 7 0 chr4 103683622 103683929 -98644418 - AluYb8 SINE Alu -9 309 1 293 56 0 0 chr4 103685077 103685113 -98643234 + U2 snRNA snRNA 1 36 -152 24 77 0 0 chr4 103686498 103686550 -98641797 + AT_rich Low_complexity Low_complexity 1 52 0 32 26 0 0 chr4 103687305 103687344 -98641003 + AT_rich Low_complexity Low_complexity 1 39 0 1083 205 18 40 chr4 103688241 103688514 -98639833 + L1MD2 LINE L1 6081 6347 -12 1655 208 13 6 chr4 103689589 103689907 -98638440 - MLT1A1 LTR MaLR -5 360 41 2304 138 25 0 chr4 103689977 103690332 -98638015 + THE1B LTR MaLR 1 364 0 228 208 62 0 chr4 103690381 103690429 -98637918 - L2 LINE L2 -6 3266 3216 208 235 0 73 chr4 103690737 103690805 -98637542 + MIR SINE MIR 200 262 0 2326 90 3 0 chr4 103691067 103691367 -98636980 - AluY SINE Alu -10 301 1 1336 169 12 31 chr4 103691372 103691627 -98636720 - AluJo SINE Alu -7 305 56 3315 104 34 0 chr4 103691627 103692096 -98636251 - MER41A LTR ERV1 -69 485 1 1413 155 48 52 chr4 103693195 103693466 -98634881 - AluJo SINE Alu -30 282 13 283 286 143 32 chr4 103694876 103695002 -98633345 - MER5A DNA MER1_type -7 182 43 916 194 5 16 chr4 103695160 103695351 -98632996 + MER5A DNA MER1_type 1 189 0 4149 181 34 8 chr4 103697722 103698491 -98629856 - L1MB7 LINE L1 -20 6164 5371 2407 4 4 0 chr4 103698491 103698753 -98629594 - AluYb8 SINE Alu -12 306 44 4149 181 34 8 chr4 103698753 103698805 -98629542 - L1MB7 LINE L1 -813 5371 5322 612 164 141 57 chr4 103698806 103698983 -98629364 - AluJo SINE Alu -3 309 118 2780 195 28 60 chr4 103699033 103699399 -98628948 - L1MB7 LINE L1 -941 5205 4829 1799 152 28 0 chr4 103699399 103699682 -98628665 - AluJb SINE Alu -21 291 1 2780 195 28 60 chr4 103699682 103699708 -98628639 - L1MB7 LINE L1 -1317 4829 4804 1847 176 0 20 chr4 103699708 103700014 -98628333 - AluJo SINE Alu -12 300 1 2780 195 28 60 chr4 103700014 103700383 -98627964 - L1MB7 LINE L1 -1342 4804 4468 2335 70 0 3 chr4 103700742 103701066 -98627281 + AluY SINE Alu 1 323 0 363 280 9 19 chr4 103701618 103701725 -98626622 - MIR SINE MIR -40 222 117 1667 150 86 18 chr4 103702562 103702687 -98625660 + AluSx SINE Alu 1 116 -196 192 40 0 0 chr4 103702687 103702712 -98625635 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1667 150 86 18 chr4 103702712 103702866 -98625481 + AluSx SINE Alu 116 299 -13 195 129 0 0 chr4 103702979 103703010 -98625337 + (CATATA)n Simple_repeat Simple_repeat 6 36 0 25 0 0 0 chr4 103703054 103703079 -98625268 + AT_rich Low_complexity Low_complexity 1 25 0 1475 196 26 0 chr4 103703978 103704249 -98624098 + AluJo SINE Alu 9 286 -26 484 294 154 64 chr4 103704646 103704978 -98623369 - L2 LINE L2 -4 3309 3008 1791 163 30 0 chr4 103704978 103705278 -98623069 + AluJo SINE Alu 1 309 -3 484 294 154 64 chr4 103705278 103705771 -98622576 - L2 LINE L2 -305 3008 2395 421 294 29 22 chr4 103706076 103706212 -98622135 - MIR3 SINE MIR -28 180 44 1774 140 38 17 chr4 103706517 103706810 -98621537 + AluJo SINE Alu 1 299 -13 1840 152 0 26 chr4 103707105 103707407 -98620940 + AluJb SINE Alu 1 294 -18 2152 114 60 26 chr4 103707874 103708226 -98620121 + THE1B LTR MaLR 1 364 0 11465 94 14 1 chr4 103708226 103709786 -98618561 + THE1B-int LTR MaLR 1 1580 0 2188 115 60 20 chr4 103709786 103710135 -98618212 + THE1B LTR MaLR 1 363 -1 2454 112 20 3 chr4 103710685 103711041 -98617306 - THE1B LTR MaLR -2 362 1 1553 226 71 15 chr4 103711119 103711632 -98616715 + L1ME1 LINE L1 5601 6159 -7 204 302 143 0 chr4 103711901 103711964 -98616383 + L2 LINE L2 3222 3293 -20 2291 83 7 23 chr4 103712341 103712643 -98615704 - AluSx SINE Alu -15 297 1 237 289 31 72 chr4 103712659 103712756 -98615591 + L2 LINE L2 3125 3217 -55 1407 246 86 89 chr4 103712781 103712888 -98615459 - L1MCc LINE L1 -3610 3331 3225 1750 136 21 18 chr4 103712888 103713168 -98615179 - AluSx SINE Alu -13 299 19 1407 246 86 89 chr4 103713168 103713247 -98615100 - L1MCc LINE L1 -3716 3225 3147 1914 131 60 0 chr4 103713247 103713530 -98614817 - AluSg SINE Alu -10 300 1 1407 246 86 89 chr4 103713530 103713933 -98614414 - L1MCc LINE L1 -3794 3147 2744 2008 144 0 13 chr4 103713933 103714239 -98614108 - AluSx SINE Alu -10 302 1 1407 246 86 89 chr4 103714239 103714472 -98613875 - L1MCc LINE L1 -4197 2744 2512 1686 179 0 17 chr4 103714472 103714762 -98613585 - AluJo SINE Alu -27 285 1 1407 246 86 89 chr4 103714762 103715384 -98612963 - L1MCc LINE L1 -4429 2512 1890 2304 194 88 12 chr4 103715384 103715895 -98612452 - MER44D DNA MER2_type 0 605 1 1407 246 86 89 chr4 103715895 103716657 -98611690 - L1MCc LINE L1 -5051 1890 956 1963 182 79 29 chr4 103716783 103717228 -98611119 - MLT1C LTR MaLR 0 467 1 218 288 27 27 chr4 103717527 103717600 -98610747 - L2 LINE L2 -7 3306 3234 23 33 0 0 chr4 103718344 103718374 -98609973 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr4 103719399 103719422 -98608925 + (TG)n Simple_repeat Simple_repeat 2 24 0 972 182 108 43 chr4 103719602 103719907 -98608440 + MER33 DNA MER1_type 1 317 -7 908 264 100 89 chr4 103721658 103722208 -98606139 - Charlie8 DNA MER1_type -1861 556 1 24 0 0 0 chr4 103724057 103724081 -98604266 + AT_rich Low_complexity Low_complexity 1 24 0 2183 106 0 0 chr4 103730218 103730501 -98597846 + AluSx SINE Alu 5 287 -25 1154 208 66 27 chr4 103730532 103730988 -98597359 - Charlie1a DNA MER1_type 0 1455 38 23 54 0 0 chr4 103733109 103733146 -98595201 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr4 103733231 103733255 -98595092 + AT_rich Low_complexity Low_complexity 1 24 0 1726 162 50 0 chr4 103734210 103734488 -98593859 + AluJb SINE Alu 7 298 -14 1093 152 109 46 chr4 103735439 103735742 -98592605 + MER33 DNA MER1_type 3 324 0 24 0 0 0 chr4 103736567 103736591 -98591756 + AT_rich Low_complexity Low_complexity 1 24 0 290 244 165 31 chr4 103736646 103736773 -98591574 + MER112 DNA MER1_type 1 144 -116 2368 148 62 12 chr4 103737622 103738028 -98590319 - MSTB LTR MaLR 0 426 1 378 132 19 123 chr4 103739160 103739266 -98589081 + FLAM SINE Alu 39 133 0 477 276 299 28 chr4 103739299 103739691 -98588656 + HAL1 LINE L1 116 613 -1894 462 211 113 88 chr4 103739692 103739886 -98588461 + HAL1 LINE L1 691 889 -1618 665 264 111 23 chr4 103740050 103740357 -98587990 + HAL1 LINE L1 1234 1567 -940 * 2698 162 39 4 chr4 103740356 103740868 -98587479 + L1MA5A LINE L1 4134 4663 -1483 1081 201 48 0 chr4 103740868 103741136 -98587211 + L1MA5A LINE L1 5013 5293 -853 292 103 0 0 chr4 103741137 103741176 -98587171 - AluJb SINE Alu -24 278 240 1207 174 0 0 chr4 103741178 103741362 -98586985 - AluJb SINE Alu -125 187 4 4897 132 67 35 chr4 103741378 103741644 -98586703 + L1MA5A LINE L1 5319 5575 -722 1743 164 7 27 chr4 103741644 103741942 -98586405 + AluJb SINE Alu 1 292 -20 4897 132 67 35 chr4 103741942 103742616 -98585731 + L1MA5A LINE L1 5575 6289 -8 1103 240 140 31 chr4 103742631 103743089 -98585258 + HAL1 LINE L1 1557 2064 -443 349 250 181 12 chr4 103743103 103743351 -98584996 + HAL1 LINE L1 2146 2435 -72 1924 167 3 0 chr4 103743838 103744143 -98584204 - AluSx SINE Alu -6 306 1 373 319 14 35 chr4 103744528 103744669 -98583678 - L2 LINE L2 -1 3271 3134 504 229 169 60 chr4 103744793 103745094 -98583253 + HAL1 LINE L1 1630 1963 -544 754 325 77 10 chr4 103745096 103745591 -98582756 - L2 LINE L2 -752 2562 2035 541 275 74 55 chr4 103746918 103747494 -98580853 + L1ME3A LINE L1 1148 1746 -4832 1657 258 116 21 chr4 103747883 103748869 -98579478 + L1ME3A LINE L1 2566 3606 -3038 739 174 37 0 chr4 103748899 103749060 -98579287 - L1 LINE L1 -2765 3381 3215 2317 111 68 24 chr4 103749175 103749240 -98579107 + L1PB3 LINE L1 5724 5785 -369 207 0 0 0 chr4 103749240 103749263 -98579084 + (CA)n Simple_repeat Simple_repeat 2 24 0 2317 111 68 24 chr4 103749263 103749610 -98578737 + L1PB3 LINE L1 5785 6154 0 280 267 134 36 chr4 103749615 103749862 -98578485 + L1ME3A LINE L1 3606 3876 -2768 25 0 0 0 chr4 103749862 103749887 -98578460 + AT_rich Low_complexity Low_complexity 1 25 0 1872 98 0 79 chr4 103749899 103750204 -98578143 - AluSx SINE Alu -31 281 1 1243 261 83 19 chr4 103750270 103750895 -98577452 + L1ME3A LINE L1 4088 4752 -1892 419 201 103 43 chr4 103751577 103751761 -98576586 + L1ME3A LINE L1 5472 5666 -978 683 181 16 8 chr4 103751765 103751892 -98576455 + AluJo SINE Alu 7 134 -178 1434 212 129 86 chr4 103751893 103752821 -98575526 + L1ME3A LINE L1 5650 6643 -25 835 143 8 0 chr4 103753105 103753231 -98575116 + FLAM_C SINE Alu 1 127 -6 21 36 0 0 chr4 103753972 103754000 -98574347 + AT_rich Low_complexity Low_complexity 1 28 0 2049 132 0 14 chr4 103754002 103754298 -98574049 + AluJo SINE Alu 1 292 -20 5808 83 153 31 chr4 103754421 103754993 -98573354 - MER11A LTR ERVK 0 1266 765 9106 26 4 0 chr4 103754993 103756844 -98571503 - L1PA2 LINE L1 -2 6153 4297 5808 83 153 31 chr4 103756844 103757316 -98571031 - MER11A LTR ERVK -501 765 1 929 197 0 0 chr4 103757679 103757852 -98570495 - FRAM SINE Alu 0 173 1 2461 73 0 13 chr4 103758106 103758421 -98569926 - AluY SINE Alu 0 311 1 239 184 0 0 chr4 103758853 103758891 -98569456 + L3 LINE CR1 1246 1283 -294 277 217 22 33 chr4 103759952 103760044 -98568303 + L1MC5 LINE L1 7817 7907 -54 1730 175 7 10 chr4 103760833 103761125 -98567222 - AluJo SINE Alu -21 291 1 1769 154 21 7 chr4 103762090 103762433 -98565914 - AluSx SINE Alu 0 347 1 300 318 37 0 chr4 103763249 103763356 -98564991 + MIR SINE MIR 152 262 0 21 36 0 0 chr4 103763650 103763678 -98564669 + AT_rich Low_complexity Low_complexity 1 28 0 2305 81 0 10 chr4 103763688 103763985 -98564362 + AluY SINE Alu 2 295 -16 2316 101 0 0 chr4 103763990 103764287 -98564060 - AluSg SINE Alu -13 297 1 365 354 60 37 chr4 103764917 103765300 -98563047 - L2 LINE L2 -188 3084 2676 2348 89 3 16 chr4 103765300 103765615 -98562732 - AluSp SINE Alu -2 311 1 365 354 60 37 chr4 103765615 103765718 -98562629 - L2 LINE L2 -596 2676 2577 264 129 143 57 chr4 103765719 103765789 -98562558 + MER116 DNA Mariner 1 76 -4 817 99 38 8 chr4 103766070 103766201 -98562146 + MER30 DNA MER1_type 1 135 -95 2336 88 3 28 chr4 103766251 103766570 -98561777 + AluSx SINE Alu 1 311 -1 13982 189 28 8 chr4 103766573 103769394 -98558953 + L1PB1 LINE L1 1549 4312 -1839 189 0 0 0 chr4 103769394 103769415 -98558932 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 13982 189 28 8 chr4 103769415 103770751 -98557596 + L1PB1 LINE L1 4312 5786 -365 2273 98 3 0 chr4 103770751 103771057 -98557290 + AluY SINE Alu 1 307 -4 13982 189 28 8 chr4 103771057 103771426 -98556921 + L1PB1 LINE L1 5786 6146 -5 552 117 202 0 chr4 103771434 103771528 -98556819 + MER30 DNA MER1_type 118 230 0 22 0 0 0 chr4 103771787 103771809 -98556538 + AT_rich Low_complexity Low_complexity 1 22 0 267 169 17 17 chr4 103772372 103772431 -98555916 - MER103 DNA DNA -104 62 4 180 243 186 0 chr4 103772967 103773037 -98555310 - L2 LINE L2 -2 3270 3188 661 281 48 35 chr4 103773336 103773564 -98554783 + MIR SINE MIR 18 248 -14 1505 58 0 0 chr4 103773708 103773898 -98554449 - L1PA5 LINE L1 -1 6153 5964 29 60 0 0 chr4 103774522 103774572 -98553775 + AT_rich Low_complexity Low_complexity 1 50 0 300 296 83 0 chr4 103774692 103774824 -98553523 - MIR SINE MIR -34 228 86 1622 154 57 7 chr4 103775074 103775354 -98552993 - AluJo SINE Alu -18 294 1 2130 113 7 13 chr4 103776394 103776696 -98551651 - AluSx SINE Alu -12 300 1 357 155 28 14 chr4 103777031 103777102 -98551245 - L1MA4A LINE L1 -46 6257 6186 1699 135 64 34 chr4 103777102 103777429 -98550918 - Tigger2a DNA MER2_type -97 337 1 340 149 184 0 chr4 103777429 103777516 -98550831 - L1M LINE L1 -880 5362 5260 * 1676 245 2 29 chr4 103777509 103777580 -98550767 - L1M4 LINE L1 -1103 5437 5366 2374 44 0 0 chr4 103777580 103777854 -98550493 + AluY SINE Alu 17 290 -21 198 0 0 0 chr4 103777854 103777876 -98550471 + (TA)n Simple_repeat Simple_repeat 2 23 0 1676 245 2 29 chr4 103777876 103778280 -98550067 - L1M4 LINE L1 -1172 5368 4974 323 238 217 26 chr4 103778276 103778465 -98549882 + L1MC5 LINE L1 7701 7925 -36 * 493 225 48 0 chr4 103778986 103779114 -98549233 - L1MA6 LINE L1 -108 6192 6055 2085 112 14 7 chr4 103779288 103779584 -98548763 + AluSx SINE Alu 1 298 -14 1309 194 116 67 chr4 103779626 103780338 -98548009 - L1MDa LINE L1 -3420 3120 2397 198 0 0 0 chr4 103780344 103780366 -98547981 + (TA)n Simple_repeat Simple_repeat 2 23 0 2135 110 0 26 chr4 103780367 103780677 -98547670 - AluSx SINE Alu -10 302 1 3204 175 108 32 chr4 103780692 103781595 -98546752 - L1MDa LINE L1 -4325 2215 1244 * 4522 155 28 28 chr4 103781589 103782455 -98545892 - L1MB3 LINE L1 0 6183 5318 180 0 0 0 chr4 103782467 103782487 -98545860 + (TTG)n Simple_repeat Simple_repeat 1 20 0 2024 85 92 0 chr4 103782498 103782769 -98545578 - AluSp SINE Alu -17 296 1 775 188 17 28 chr4 103782783 103782964 -98545383 - L1MB3 LINE L1 -1362 4784 4606 756 212 7 7 chr4 103783402 103783548 -98544799 + FRAM SINE Alu 6 151 -25 28 61 0 0 chr4 103783556 103783605 -98544742 + AT_rich Low_complexity Low_complexity 1 49 0 207 0 0 0 chr4 103784792 103784815 -98543532 + (T)n Simple_repeat Simple_repeat 1 23 0 310 232 134 0 chr4 103785655 103785737 -98542610 + L2 LINE L2 3221 3313 0 1925 111 4 0 chr4 103786880 103787132 -98541215 - AluSx SINE Alu -41 271 19 464 293 49 18 chr4 103787189 103787353 -98540994 + MIR SINE MIR 20 188 -74 2025 140 0 0 chr4 103787517 103787802 -98540545 + AluSx SINE Alu 13 297 -15 1186 205 100 12 chr4 103788997 103789256 -98539091 - AluJo SINE Alu -16 286 5 187 71 0 0 chr4 103790069 103790097 -98538250 + (TTTTG)n Simple_repeat Simple_repeat 1 180 0 2358 75 0 0 chr4 103790097 103790377 -98537970 - AluY SINE Alu -31 280 1 212 194 0 0 chr4 103790388 103790424 -98537923 + A-rich Low_complexity Low_complexity 1 36 0 532 282 123 9 chr4 103790424 103790651 -98537696 + MER102a DNA MER1_type 75 327 -3 239 221 147 0 chr4 103791619 103791687 -98536660 + MLT1L LTR MaLR 1 78 -537 247 315 22 11 chr4 103791868 103791960 -98536387 + MLT1L LTR MaLR 369 461 -154 222 191 48 0 chr4 103792283 103792325 -98536022 - L2 LINE L2 -14 3258 3215 2019 213 46 18 chr4 103792690 103793193 -98535154 + LTR40a LTR ERVL 1 517 -2 1010 194 0 0 chr4 103793597 103793762 -98534585 + AluJb SINE Alu 131 295 -17 352 225 15 15 chr4 103793772 103793871 -98534476 + MER5B DNA MER1_type 85 172 -6 9076 201 13 20 chr4 103794481 103795799 -98532548 - L1 LINE L1 -1904 4242 2941 2442 84 0 0 chr4 103795799 103796096 -98532251 - AluY SINE Alu -14 297 1 9076 201 13 20 chr4 103796096 103796786 -98531561 - L1 LINE L1 -3205 2941 2248 5934 95 41 24 chr4 103796798 103797826 -98530521 + L1PB1 LINE L1 5100 6144 -7 1655 122 11 8 chr4 103797888 103798150 -98530197 + L1PA14 LINE L1 5899 6161 0 1584 152 219 17 chr4 103798487 103798843 -98529504 - MSTA LTR MaLR 0 428 1 2139 101 42 33 chr4 103798945 103799252 -98529095 + AluSg SINE Alu 1 310 0 183 80 0 0 chr4 103799261 103799286 -98529061 + (CA)n Simple_repeat Simple_repeat 2 26 0 2296 101 3 0 chr4 103799321 103799619 -98528728 - AluSc SINE Alu -10 299 1 648 167 80 14 chr4 103799733 103799871 -98528476 - MLT1A2 LTR MaLR 0 374 228 282 217 84 12 chr4 103901336 103901419 -98426928 + MIR3 SINE MIR 101 189 -19 198 136 0 0 chr4 103901599 103901643 -98426704 + (A)n Simple_repeat Simple_repeat 1 44 0 2011 115 4 4 chr4 103901647 103901954 -98426393 + AluSc SINE Alu 1 307 0 22 0 0 0 chr4 103902051 103902073 -98426274 + AT_rich Low_complexity Low_complexity 1 22 0 551 226 154 69 chr4 103902487 103902974 -98425373 - MLT1G1 LTR MaLR -5 537 5 220 254 0 0 chr4 103904093 103904148 -98424199 - MIR SINE MIR -111 151 97 287 312 80 56 chr4 103904526 103904631 -98423716 + L2 LINE L2 3145 3255 -17 1837 122 75 30 chr4 103904631 103904926 -98423421 + AluJb SINE Alu 1 308 -4 287 312 80 56 chr4 103904926 103904945 -98423402 + L2 LINE L2 3255 3272 0 2220 224 112 3 chr4 103905200 103905799 -98422548 - L1MC4 LINE L1 -141 7901 7238 1771 196 198 8 chr4 103905804 103906325 -98422022 - L1MC4 LINE L1 -963 7079 6460 319 320 33 8 chr4 103906579 103906701 -98421646 - L3 LINE CR1 -264 1313 1189 220 254 0 0 chr4 103906756 103906811 -98421536 - MIR SINE MIR -111 151 97 204 329 40 34 chr4 103906869 103907018 -98421329 - L3 LINE CR1 -409 1168 1019 250 271 116 33 chr4 103907054 103907235 -98421112 + MIR SINE MIR 65 260 -2 * 387 252 62 93 chr4 103907211 103907469 -98420878 - L3 LINE CR1 -561 1016 767 307 220 76 161 chr4 103909704 103909927 -98418420 + MIR SINE MIR 17 220 -42 233 175 0 0 chr4 103911155 103911195 -98417152 + MER113 DNA MER1_type? 8 47 -474 379 271 10 0 chr4 103911277 103911373 -98416974 - MER5A DNA MER1_type -83 106 10 759 232 200 22 chr4 103911400 103911770 -98416577 + MER113 DNA MER1_type? 85 520 -1 903 43 35 17 chr4 103912170 103912286 -98416061 + L1PA3 LINE L1 6038 6155 0 4205 111 88 7 chr4 103913379 103914075 -98414272 - Tigger3(Golem) DNA MER2_type -1 3028 2277 565 172 81 0 chr4 103914067 103914166 -98414181 - Tigger3(Golem) DNA MER2_type -2922 107 1 * 450 306 101 10 chr4 103915716 103915915 -98412432 + MIR SINE MIR 5 221 -41 1676 178 0 14 chr4 103917169 103917455 -98410892 + AluJo SINE Alu 1 282 -30 228 35 0 0 chr4 103917455 103917484 -98410863 + (ATTAG)n Simple_repeat Simple_repeat 4 32 0 2077 179 92 25 chr4 103917654 103918090 -98410257 + LTR40c LTR ERVL 1 465 0 725 154 103 45 chr4 103918095 103918251 -98410096 + MER21A LTR ERV1 414 578 -353 259 207 305 0 chr4 103919477 103919559 -98408788 - MER91C DNA MER1_type -1 139 33 23 33 0 0 chr4 103920170 103920200 -98408147 + AT_rich Low_complexity Low_complexity 1 30 0 516 271 45 13 chr4 103920453 103920608 -98407739 + LTR40b LTR ERVL 143 302 -160 182 270 54 54 chr4 103920704 103920778 -98407569 + MIR SINE MIR 152 225 -37 206 293 129 9 chr4 103921481 103921597 -98406750 + L2 LINE L2 3143 3272 0 24 0 0 0 chr4 103922155 103922179 -98406168 + AT_rich Low_complexity Low_complexity 1 24 0 2411 83 3 0 chr4 103922681 103922993 -98405354 - AluSp SINE Alu 0 313 1 447 256 8 16 chr4 103924227 103924352 -98403995 - MER94 DNA DNA -8 126 3 205 176 0 0 chr4 103926942 103926976 -98401371 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 592 214 0 29 chr4 103927363 103927503 -98400844 - MIR SINE MIR -33 229 94 253 270 45 95 chr4 103928048 103928270 -98400077 - MER102b DNA MER1_type -2 339 129 290 197 13 26 chr4 103929373 103929449 -98398898 - L1MC4 LINE L1 0 8042 7968 748 234 107 0 chr4 103929461 103929668 -98398679 - L1MC4 LINE L1 -174 7728 7418 868 242 113 56 chr4 103929804 103930456 -98397891 - L2 LINE L2 0 3313 2630 180 333 0 15 chr4 103930528 103930594 -98397753 - MER5A DNA MER1_type 0 189 125 441 268 163 38 chr4 103931378 103931517 -98396830 + MIR SINE MIR 25 200 -62 991 63 79 0 chr4 103931517 103931643 -98396704 + MER85 DNA T2_type 2 137 -2 441 268 163 38 chr4 103931643 103931712 -98396635 + MIR SINE MIR 200 259 -3 186 133 0 0 chr4 103931729 103931759 -98396588 + (TTA)n Simple_repeat Simple_repeat 3 32 0 194 357 98 0 chr4 103932541 103932653 -98395694 + MIR SINE MIR 81 203 -59 414 300 134 32 chr4 103933897 103934174 -98394173 + L2 LINE L2 2066 2370 -944 3120 131 85 57 chr4 103934244 103934414 -98393933 + L1MB5 LINE L1 5522 5686 -488 1911 162 10 0 chr4 103934414 103934704 -98393643 + AluSx SINE Alu 1 293 -19 3120 131 85 57 chr4 103934704 103935123 -98393224 + L1MB5 LINE L1 5686 6092 -82 2411 76 0 3 chr4 103935123 103935426 -98392921 + AluY SINE Alu 1 302 -9 2419 194 38 2 chr4 103935432 103935881 -98392466 - MLT1C LTR MaLR -2 465 1 3120 131 85 57 chr4 103935881 103935918 -98392429 + L1MB5 LINE L1 6096 6174 0 2244 227 113 4 chr4 103936223 103936752 -98391595 - MLT1G LTR MaLR 0 590 4 1740 188 69 3 chr4 103936763 103937098 -98391249 + MLT1A1 LTR MaLR 1 357 -8 295 266 0 0 chr4 103937191 103937255 -98391092 + L2 LINE L2 3174 3237 -35 587 269 109 21 chr4 103938078 103938316 -98390031 + MIR SINE MIR 2 260 -2 493 278 0 0 chr4 103939399 103939514 -98388833 + MIR3 SINE MIR 49 163 -45 1340 143 5 5 chr4 103939689 103939892 -98388455 + AluJb SINE Alu 23 225 -87 249 33 0 0 chr4 103940269 103940299 -98388048 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1459 108 0 10 chr4 103941060 103941254 -98387093 - AluSx SINE Alu -120 192 1 21 0 0 0 chr4 103943633 103943654 -98384693 + AT_rich Low_complexity Low_complexity 1 21 0 445 301 78 43 chr4 103943695 103944091 -98384256 - L2 LINE L2 -51 3262 2853 290 202 0 12 chr4 103944518 103944602 -98383745 + CT-rich Low_complexity Low_complexity 2 84 0 434 277 23 57 chr4 103944802 103944979 -98383368 + MER91A DNA MER1_type 1 171 -25 221 283 0 0 chr4 103945464 103945524 -98382823 - MIR SINE MIR -113 149 90 296 287 36 80 chr4 103945764 103945977 -98382370 - MLT1J LTR MaLR -273 194 13 202 274 53 80 chr4 103946154 103946267 -98382080 - L2 LINE L2 -1 3271 3162 1003 226 90 38 chr4 103946383 103946728 -98381619 + MLT1A1 LTR MaLR 1 363 -2 396 313 11 68 chr4 103947451 103947627 -98380720 - MER5B DNA MER1_type -8 170 5 2366 91 0 0 chr4 103948781 103949079 -98379268 + AluSq SINE Alu 1 298 -15 34 24 0 0 chr4 103951741 103951782 -98376565 + AT_rich Low_complexity Low_complexity 1 41 0 393 285 152 0 chr4 103951888 103952039 -98376308 + MIR SINE MIR 79 252 -10 234 156 0 0 chr4 103953846 103953891 -98374456 + Tigger1 DNA MER2_type 163 207 -2211 16027 113 42 13 chr4 103954472 103956822 -98371525 + Tigger1 DNA MER2_type 1 2418 0 2357 188 55 17 chr4 103956850 103957368 -98370979 + L1ME1 LINE L1 5639 6332 -2 1050 167 0 0 chr4 103957488 103957656 -98370691 + FRAM SINE Alu 1 168 -8 1857 130 10 40 chr4 103958025 103958326 -98370021 + AluJb SINE Alu 1 292 -20 43778 32 22 1 chr4 103958329 103964357 -98363990 + L1HS LINE L1 1 6155 0 661 202 10 7 chr4 103964385 103964577 -98363770 - LTR54B LTR ERV1 -274 224 1 1519 233 60 7 chr4 103964579 103964995 -98363352 - L1M4 LINE L1 -1140 5006 4569 1216 137 61 96 chr4 103964997 103965340 -98363007 - MER33 DNA MER1_type -6 318 1 810 219 34 26 chr4 103965434 103965703 -98362644 - L1M4 LINE L1 -1689 4457 4187 207 114 0 0 chr4 103965703 103965738 -98362609 + (A)n Simple_repeat Simple_repeat 1 35 0 433 284 68 99 chr4 103965986 103966069 -98362278 + MIR SINE MIR 34 118 -144 2369 78 7 0 chr4 103966069 103966364 -98361983 - AluY SINE Alu -14 297 1 433 284 68 99 chr4 103966364 103966502 -98361845 + MIR SINE MIR 118 248 -14 381 242 43 38 chr4 103967694 103967862 -98360485 + MIR SINE MIR 16 176 -65 22 0 0 0 chr4 103968261 103968283 -98360064 + AT_rich Low_complexity Low_complexity 1 22 0 2068 115 0 4 chr4 103968871 103969185 -98359162 - AluSc SINE Alu 0 313 1 428 273 53 0 chr4 103970908 103971040 -98357307 - MIR3 SINE MIR -31 177 39 1631 155 33 75 chr4 103971043 103971183 -98357164 + L1PB4 LINE L1 5835 5979 -177 2048 134 7 0 chr4 103971183 103971473 -98356874 + AluSx SINE Alu 1 292 -20 1631 155 33 75 chr4 103971473 103971667 -98356680 + L1PB4 LINE L1 5979 6155 -1 732 168 0 24 chr4 103972553 103972678 -98355669 + FLAM_A SINE Alu 1 122 -11 299 323 45 13 chr4 103972974 103973129 -98355218 - MIR SINE MIR -46 216 57 1412 94 94 5 chr4 103973303 103973516 -98354831 + L1PA13 LINE L1 5928 6159 -4 259 336 164 9 chr4 103973945 103974055 -98354292 - L2 LINE L2 -77 3195 3069 2358 188 34 9 chr4 103974469 103974916 -98353431 - LTR32 LTR ERVL 0 471 14 192 197 66 33 chr4 103975828 103975889 -98352458 - L2 LINE L2 -1559 1755 1693 2154 109 20 3 chr4 103978072 103978365 -98349982 + AluSx SINE Alu 1 298 -14 567 282 101 48 chr4 103978863 103979111 -98349236 - MIR SINE MIR 0 262 2 2200 118 0 3 chr4 103979732 103980036 -98348311 + AluSx SINE Alu 1 303 -9 1317 152 148 23 chr4 103980084 103980341 -98348006 - AluJo SINE Alu -23 289 1 2161 105 3 3 chr4 103980718 103981003 -98347344 - AluSc SINE Alu -24 285 1 21 36 0 0 chr4 103981552 103981580 -98346767 + AT_rich Low_complexity Low_complexity 1 28 0 815 130 46 8 chr4 103983256 103983387 -98344960 + AluJo SINE Alu 1 136 -176 405 200 110 10 chr4 103984289 103984389 -98343958 + L2 LINE L2 3195 3304 -9 1801 113 36 29 chr4 103984528 103984830 -98343517 + AluSx SINE Alu 7 310 0 227 347 71 0 chr4 103984847 103984945 -98343402 + L2 LINE L2 3116 3220 -52 668 140 0 0 chr4 103985766 103985859 -98342488 - AluSg/x SINE Alu -15 297 205 337 225 234 45 chr4 103986827 103986938 -98341409 + L2 LINE L2 3137 3268 -4 1997 106 0 0 chr4 103988267 103988532 -98339815 - AluY SINE Alu -46 265 1 224 260 96 0 chr4 103988606 103988679 -98339668 + MIR SINE MIR 110 189 -73 422 224 122 0 chr4 103988766 103988864 -98339483 - MIR SINE MIR -48 214 105 736 95 19 9 chr4 103991995 103992100 -98336247 + AluY SINE Alu 198 303 -8 1032 210 27 27 chr4 103992814 103993033 -98335314 - MER20 DNA MER1_type 0 219 1 584 288 25 6 chr4 103993611 103993771 -98334576 - MER91B DNA MER1_type -27 163 1 355 332 87 20 chr4 103993775 103993971 -98334376 + L2 LINE L2 2181 2389 -925 352 0 0 0 chr4 103994092 103994131 -98334216 + (TTTTG)n Simple_repeat Simple_repeat 2 170 0 2237 89 0 0 chr4 103994131 103994412 -98333935 - AluSc SINE Alu -1 319 1 400 234 45 36 chr4 103994679 103994790 -98333557 - L2 LINE L2 -14 3299 3188 310 273 15 0 chr4 103995007 103995073 -98333274 + L2 LINE L2 3201 3267 -5 278 312 52 0 chr4 103995305 103995382 -98332965 - L2 LINE L2 -3 3310 3230 1019 56 8 8 chr4 103995387 103995512 -98332835 - AluSp SINE Alu -175 138 14 648 215 63 24 chr4 103995604 103995809 -98332538 - MLT1J2 LTR MaLR -237 213 1 661 291 145 14 chr4 103995865 103996154 -98332193 + L2 LINE L2 2948 3274 -39 182 291 151 35 chr4 103996205 103996291 -98332056 - L2 LINE L2 -9 3263 3168 225 263 186 39 chr4 103997735 103997891 -98330456 + MIR SINE MIR 23 201 -61 487 178 44 0 chr4 103998427 103998517 -98329830 - L1MC3 LINE L1 -23 7762 7669 329 118 0 132 chr4 103998517 103998585 -98329762 - LTR10C LTR ERV1 0 591 533 * 575 122 0 0 chr4 103998583 103998665 -98329682 + LTR10C LTR ERV1 510 591 0 2809 157 89 25 chr4 103998666 103999227 -98329120 - L1MC3 LINE L1 -113 7672 7076 394 176 0 20 chr4 104000727 104000829 -98327518 + (TG)n Simple_repeat Simple_repeat 1 100 0 452 321 162 23 chr4 104001143 104001570 -98326777 - L2 LINE L2 -2 3311 2826 371 232 12 0 chr4 104001596 104001678 -98326669 - L1ME3A LINE L1 -55 6115 6033 2322 104 0 7 chr4 104002701 104003008 -98325339 - AluSx SINE Alu -7 305 1 729 300 77 14 chr4 104003947 104004244 -98324103 - MLT1K LTR MaLR -128 460 145 11616 166 25 30 chr4 104004378 104004993 -98323354 + L1PB4 LINE L1 2924 3541 -2615 2317 95 0 25 chr4 104004993 104005309 -98323038 + AluY SINE Alu 1 308 -3 11616 166 25 30 chr4 104005309 104007192 -98321155 + L1PB4 LINE L1 3541 5432 -724 2128 128 16 10 chr4 104007192 104007498 -98320849 + AluSg SINE Alu 1 308 -2 11616 166 25 30 chr4 104007498 104007870 -98320477 + L1PB4 LINE L1 5432 5782 -374 306 0 0 0 chr4 104007870 104007904 -98320443 + (CA)n Simple_repeat Simple_repeat 2 35 0 11616 166 25 30 chr4 104007904 104008278 -98320069 + L1PB4 LINE L1 5782 6156 0 2260 98 6 22 chr4 104008751 104009067 -98319280 - AluSx SINE Alu -1 311 1 536 270 142 26 chr4 104010171 104010397 -98317950 + MER112 DNA MER1_type 3 254 -2 435 256 65 65 chr4 104010541 104010740 -98317607 + MIR SINE MIR 3 201 -61 1973 145 0 7 chr4 104010960 104011256 -98317091 + AluJb SINE Alu 1 294 -18 1116 266 92 44 chr4 104011357 104011835 -98316512 - MLT1K LTR MaLR -6 582 82 216 0 0 0 chr4 104012588 104012612 -98315735 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 1907 147 0 11 chr4 104012612 104012897 -98315450 - AluJo SINE Alu -30 282 1 2286 93 0 13 chr4 104013072 104013372 -98314975 + AluSx SINE Alu 1 296 -16 202 205 0 0 chr4 104013392 104013431 -98314916 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1801 165 7 19 chr4 104014050 104014359 -98313988 - AluJo SINE Alu -7 305 1 504 271 45 34 chr4 104014610 104014787 -98313560 - MIR SINE MIR -44 218 40 229 266 166 53 chr4 104014922 104015091 -98313256 - MIR3 SINE MIR -6 202 15 2208 109 7 7 chr4 104015097 104015400 -98312947 - AluSx SINE Alu -9 303 1 386 382 30 0 chr4 104015666 104015831 -98312516 - MIR SINE MIR -92 170 1 214 318 75 9 chr4 104015854 104015961 -98312386 - L3b LINE CR1 -184 1399 1286 2332 88 0 3 chr4 104016155 104016449 -98311898 + AluSx SINE Alu 1 293 -19 1639 210 135 60 chr4 104016606 104017110 -98311237 - MLT1F LTR MaLR 0 542 1 409 325 121 0 chr4 104019155 104019321 -98309026 + MIR SINE MIR 72 257 -5 27640 104 17 80 chr4 104019347 104022943 -98305404 + L1PA7 LINE L1 12 3219 -2927 2597 62 0 0 chr4 104022943 104023249 -98305098 + AluY SINE Alu 1 306 -5 27640 104 17 80 chr4 104023249 104024566 -98303781 + L1PA7 LINE L1 3219 4617 -1529 7338 59 16 0 chr4 104024566 104025720 -98302627 + L1PA7 LINE L1 4989 6153 -1 1136 182 10 112 chr4 104025741 104026037 -98302310 + AluJo SINE Alu 21 286 -26 212 83 0 28 chr4 104026039 104026075 -98302272 + (TG)n Simple_repeat Simple_repeat 2 36 0 194 385 115 0 chr4 104026079 104026175 -98302172 + MIR3 SINE MIR 81 187 -21 272 203 188 53 chr4 104026372 104026505 -98301842 + MIR SINE MIR 111 261 -1 517 296 62 22 chr4 104027126 104027352 -98300995 + MIR SINE MIR 28 262 0 675 222 122 6 chr4 104027712 104027892 -98300455 + MIR SINE MIR 8 208 -54 384 290 40 0 chr4 104029605 104029729 -98298618 + MIR SINE MIR 92 220 -42 1264 106 41 37 chr4 104030899 104031117 -98297230 - MER6 DNA MER2_type 0 865 647 688 142 0 18 chr4 104031117 104031230 -98297117 + AluSg/x SINE Alu 200 310 0 1754 153 99 46 chr4 104031230 104031612 -98296735 - MER6A DNA MER2_type -546 59 -45 338 297 213 20 chr4 104032755 104032957 -98295390 - MIR SINE MIR 0 262 22 2127 112 0 14 chr4 104033053 104033348 -98294999 + AluSx SINE Alu 1 291 -21 1713 218 47 31 chr4 104035162 104035572 -98292775 - LTR40b LTR ERVL 0 462 46 2231 78 0 0 chr4 104035572 104035840 -98292507 + AluSg SINE Alu 11 278 -32 243 190 131 20 chr4 104036123 104036253 -98292094 - MIR SINE MIR -96 166 21 652 278 38 38 chr4 104036785 104036994 -98291353 - MIR SINE MIR -25 237 29 306 318 26 123 chr4 104037039 104037266 -98291081 + L2 LINE L2 2305 2458 -856 1423 178 45 57 chr4 104037266 104037580 -98290767 - AluJo SINE Alu 0 312 3 306 318 26 123 chr4 104037580 104037855 -98290492 + L2 LINE L2 2458 2758 -556 811 179 54 18 chr4 104037922 104038090 -98290257 - MER5A DNA MER1_type 0 189 16 494 331 91 58 chr4 104038108 104038504 -98289843 + L2 LINE L2 2858 3266 -6 503 104 0 39 chr4 104038596 104038673 -98289674 + AluJ/FLAM SINE Alu 3 76 -236 2762 152 4 42 chr4 104039739 104040213 -98288134 - MSTB2 LTR MaLR -1 456 1 240 35 0 0 chr4 104041250 104041279 -98287068 + (GA)n Simple_repeat Simple_repeat 1 29 0 186 317 89 32 chr4 104041435 104041558 -98286789 - MIR SINE MIR -34 228 99 * 571 284 64 75 chr4 104041554 104042059 -98286288 + L2 LINE L2 2737 3312 -1 432 0 0 0 chr4 104042882 104042930 -98285417 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 31 26 0 0 chr4 104042965 104043003 -98285344 + AT_rich Low_complexity Low_complexity 1 38 0 619 273 80 105 chr4 104043187 104044036 -98284311 + L2 LINE L2 2442 3272 0 347 293 69 52 chr4 104044464 104044555 -98283792 + MIR SINE MIR 8 96 -166 2517 76 0 0 chr4 104044555 104044859 -98283488 - AluSc SINE Alu -5 304 1 347 293 69 52 chr4 104044859 104044941 -98283406 + MIR SINE MIR 96 184 -78 963 181 105 13 chr4 104044950 104045188 -98283159 - Charlie5 DNA MER1_type -27 2585 2326 2231 137 58 0 chr4 104045193 104045521 -98282826 + MER7A DNA MER2_type 2 346 0 686 294 25 15 chr4 104046534 104046735 -98281612 + MIR SINE MIR 52 254 -8 435 198 0 31 chr4 104047843 104047939 -98280408 - MER104 DNA Tc2 -87 93 1 2000 163 0 0 chr4 104047969 104048275 -98280072 + AluJb SINE Alu 3 308 -4 234 0 0 0 chr4 104099881 104099907 -98228440 + (T)n Simple_repeat Simple_repeat 1 26 0 327 301 44 22 chr4 104100188 104100324 -98228023 + MIR SINE MIR 3 141 -121 * 354 184 204 31 chr4 104100323 104100421 -98227926 - L2 LINE L2 -5 3308 3194 284 216 162 0 chr4 104101044 104101118 -98227229 + MIR SINE MIR 116 201 -61 187 407 25 0 chr4 104101177 104101258 -98227089 - L2 LINE L2 -196 3076 2994 277 296 58 85 chr4 104101369 104101857 -98226490 - L2 LINE L2 -25 3247 2764 1673 260 82 10 chr4 104102225 104102749 -98225598 - MLT1F1 LTR MaLR 0 567 5 469 258 50 50 chr4 104102766 104102948 -98225399 - Charlie8 DNA MER1_type -2235 182 1 254 252 171 18 chr4 104103669 104103780 -98224567 - L2 LINE L2 -5 3308 3181 3301 175 54 9 chr4 104104251 104104897 -98223450 + L1MB8 LINE L1 5501 6175 -3 439 234 48 24 chr4 104105969 104106093 -98222254 - MIR SINE MIR -34 228 102 1618 145 107 15 chr4 104106208 104106545 -98221802 - L1MA9 LINE L1 -9 7263 6896 2359 130 6 0 chr4 104106545 104106904 -98221443 + L1PA14 LINE L1 5820 6180 0 6058 190 46 55 chr4 104107112 104107429 -98220918 - L1MA9 LINE L1 -363 6909 6591 3443 39 5 0 chr4 104107429 104107815 -98220532 - L1PA7 LINE L1 -3 6151 5764 6058 190 46 55 chr4 104107815 104108065 -98220282 - L1MA9 LINE L1 -681 6591 6340 1851 214 25 30 chr4 104108065 104108463 -98219884 - MSTD LTR MaLR 0 396 1 6058 190 46 55 chr4 104108463 104109204 -98219143 - L1MA9 LINE L1 -932 6340 5594 3495 69 7 16 chr4 104109204 104109651 -98218696 + L1PA10 LINE L1 5726 6168 0 6058 190 46 55 chr4 104109651 104109975 -98218372 - L1MA9 LINE L1 -1678 5594 5269 333 0 0 0 chr4 104109975 104110012 -98218335 + (TG)n Simple_repeat Simple_repeat 1 37 0 6058 190 46 55 chr4 104110012 104110131 -98218216 - L1MA9 LINE L1 -2003 5269 5151 1473 180 3 35 chr4 104110131 104110414 -98217933 - AluJo SINE Alu -38 274 1 6058 190 46 55 chr4 104110414 104110658 -98217689 - L1MA9 LINE L1 -2121 5151 4957 1837 224 70 10 chr4 104110672 104111158 -98217189 - L1MA9 LINE L1 -6514 516 2 1471 201 52 87 chr4 104111271 104111350 -98216997 - MER39 LTR ERV1 0 707 627 1467 120 50 27 chr4 104111350 104111609 -98216738 + L1MA4A LINE L1 6039 6303 0 1471 201 52 87 chr4 104111609 104112041 -98216306 - MER39 LTR ERV1 -80 627 9 581 308 86 6 chr4 104112066 104112381 -98215966 + L1ME4a LINE L1 5537 5876 -245 256 300 210 0 chr4 104113534 104113634 -98214713 + MIR SINE MIR 29 149 -113 473 230 152 12 chr4 104113680 104113850 -98214497 - MIR SINE MIR -52 210 17 660 294 84 14 chr4 104114739 104114953 -98213394 + MIR SINE MIR 6 234 -28 637 35 94 0 chr4 104115150 104115235 -98213112 - L1PA4 LINE L1 0 6155 6063 1559 181 0 48 chr4 104116472 104116765 -98211582 + AluJo SINE Alu 1 279 -33 452 255 19 43 chr4 104116807 104116995 -98211352 - MER34 LTR ERV1 -411 131 1 456 327 88 79 chr4 104117717 104118160 -98210187 + L2 LINE L2 2826 3272 0 37326 61 3 1 chr4 104118527 104123178 -98205169 - L1P LINE L1 -1471 4675 15 270 81 0 0 chr4 104123238 104123275 -98205072 + (TG)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr4 104123486 104123507 -98204840 + AT_rich Low_complexity Low_complexity 1 21 0 312 259 194 0 chr4 104124149 104124257 -98204090 + L2 LINE L2 3143 3271 -1 415 354 58 49 chr4 104124348 104124676 -98203671 + L2 LINE L2 2934 3264 -8 263 298 172 20 chr4 104126318 104126469 -98201878 - MER5B DNA MER1_type -4 174 1 2419 38 55 0 chr4 104126522 104126646 -98201701 + AluY SINE Alu 1 117 -194 185 0 40 0 chr4 104126646 104126671 -98201676 + (TA)n Simple_repeat Simple_repeat 2 27 0 2419 38 55 0 chr4 104126671 104126839 -98201508 + AluY SINE Alu 117 309 -2 580 249 80 84 chr4 104127702 104127939 -98200408 + MIR SINE MIR 20 255 -7 1836 155 24 3 chr4 104128278 104128568 -98199779 + AluJb SINE Alu 1 296 -16 386 342 86 61 chr4 104128587 104129158 -98199189 + L1 LINE L1 3743 4341 -1805 231 114 0 0 chr4 104129158 104129193 -98199154 + (TA)n Simple_repeat Simple_repeat 1 35 0 386 342 86 61 chr4 104129193 104129428 -98198919 + L1 LINE L1 4341 4569 -1577 2001 264 87 63 chr4 104129448 104129854 -98198493 - L2 LINE L2 -7 3306 2911 2469 86 0 6 chr4 104129854 104130167 -98198180 + AluSp SINE Alu 3 313 0 2001 264 87 63 chr4 104130167 104131005 -98197342 - L2 LINE L2 -402 2911 1996 232 294 70 28 chr4 104131440 104131583 -98196764 + L1P LINE L1 4901 5049 -1097 1745 155 9 32 chr4 104131975 104132291 -98196056 - AluJo SINE Alu -3 309 1 24 0 0 0 chr4 104132490 104132514 -98195833 + AT_rich Low_complexity Low_complexity 1 24 0 198 118 0 0 chr4 104133116 104133150 -98195197 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 242 273 71 60 chr4 104133169 104133352 -98194995 - L2 LINE L2 -12 3301 3117 389 304 0 24 chr4 104133798 104133923 -98194424 - L2 LINE L2 0 3313 3192 1488 156 47 40 chr4 104134071 104134482 -98193865 + MLT1C LTR MaLR 1 467 0 1463 191 7 24 chr4 104134655 104134949 -98193398 + AluJo SINE Alu 9 297 -15 4086 215 94 10 chr4 104135044 104136054 -98192293 - MER69B DNA AcHobo -1 1225 131 599 228 111 25 chr4 104136054 104136216 -98192131 + AluSg/x SINE Alu 134 309 0 544 186 12 106 chr4 104136231 104136392 -98191955 - MER69B DNA AcHobo -1079 147 2 2243 109 0 3 chr4 104136429 104136731 -98191616 - AluSq SINE Alu -12 301 1 21 0 0 0 chr4 104136741 104136762 -98191585 + AT_rich Low_complexity Low_complexity 1 21 0 2402 183 55 30 chr4 104137673 104138166 -98190181 - MLT1D LTR MaLR 0 505 1 398 239 126 12 chr4 104139219 104139386 -98188961 + MIR SINE MIR 31 216 -46 361 267 78 26 chr4 104140109 104140300 -98188047 - L1ME4a LINE L1 -2 6119 5919 402 272 24 48 chr4 104140302 104140348 -98187999 - LTR16C LTR ERVL -2 489 443 1884 152 14 10 chr4 104140348 104140645 -98187702 + AluJb SINE Alu 1 298 -14 402 272 24 48 chr4 104140645 104140723 -98187624 - LTR16C LTR ERVL -48 443 368 657 272 110 12 chr4 104140724 104141187 -98187160 - MLT1G LTR MaLR 0 555 1 510 320 30 47 chr4 104141187 104141484 -98186863 - LTR16C LTR ERVL -120 371 80 231 291 184 51 chr4 104141652 104141886 -98186461 + L2 LINE L2 1160 1424 -1890 1988 74 22 4 chr4 104141915 104142185 -98186162 + MER4D LTR ERV1 1 275 -597 3727 71 31 10 chr4 104142185 104142675 -98185672 + LTR3b LTR ERVK 1 500 0 1634 81 129 16 chr4 104142675 104142918 -98185429 + MER4D LTR ERV1 268 538 -334 5578 88 21 1 chr4 104143089 104143841 -98184506 - L1PA10 LINE L1 -2 6166 5400 2501 112 9 0 chr4 104143841 104144189 -98184158 + MER4D LTR ERV1 522 872 0 376 344 78 30 chr4 104144502 104144874 -98183473 + L2 LINE L2 1813 2202 -1112 1061 219 26 91 chr4 104144892 104145234 -98183113 - MER46C DNA MER2_type -15 323 4 457 317 28 22 chr4 104145234 104145414 -98182933 + L2 LINE L2 2208 2388 -926 601 259 82 14 chr4 104145488 104145708 -98182639 - LTR16A LTR ERVL -180 270 36 625 319 82 67 chr4 104145757 104146578 -98181769 + L2 LINE L2 2422 3272 0 774 322 9 4 chr4 104146705 104146932 -98181415 - MIR SINE MIR -26 236 9 342 293 228 13 chr4 104147058 104147542 -98180805 + L2 LINE L2 2712 3304 -9 3959 121 55 9 chr4 104147554 104148246 -98180101 + L1MB3 LINE L1 5460 6183 0 2162 110 26 45 chr4 104148256 104148532 -98179815 - THE1C LTR MaLR 0 375 95 1870 151 24 40 chr4 104148532 104148902 -98179445 + THE1B LTR MaLR 1 364 0 11479 99 8 7 chr4 104148902 104150481 -98177866 + THE1B-int LTR MaLR 1 1580 0 2015 135 19 53 chr4 104150481 104150858 -98177489 + THE1B LTR MaLR 1 364 0 2162 110 26 45 chr4 104150858 104150961 -98177386 - THE1C LTR MaLR -277 98 1 446 276 66 0 chr4 104151352 104151488 -98176859 - LTR33 LTR ERVL -362 159 25 313 175 0 0 chr4 104151534 104151591 -98176756 - MLT2C2 LTR ERVL 0 464 408 2786 157 34 19 chr4 104151610 104152133 -98176214 - MLT2B3 LTR ERVL -20 534 4 509 303 28 39 chr4 104152748 104152926 -98175421 + MIR SINE MIR 1 176 -86 12048 157 52 19 chr4 104152927 104153740 -98174607 - L1M4 LINE L1 -3625 2757 1972 2174 102 7 3 chr4 104153740 104154035 -98174312 - AluSp SINE Alu -17 296 1 12048 157 52 19 chr4 104154035 104155860 -98172487 - L1M4 LINE L1 -4410 1972 27 383 359 78 22 chr4 104157121 104157207 -98171140 - MIR SINE MIR -6 256 176 2184 119 10 0 chr4 104157207 104157501 -98170846 + AluSx SINE Alu 1 297 -15 383 359 78 22 chr4 104157501 104157645 -98170702 - MIR SINE MIR -86 176 13 320 254 14 0 chr4 104158087 104158158 -98170189 + MIR SINE MIR 79 150 -112 1759 145 52 24 chr4 104158306 104158595 -98169752 - AluJb SINE Alu -15 297 1 2036 141 118 18 chr4 104159229 104159618 -98168729 - MSTA LTR MaLR 0 428 1 187 310 35 17 chr4 104160111 104160169 -98168178 - L2 LINE L2 -18 3254 3196 486 326 33 11 chr4 104160211 104160392 -98167955 - MIR SINE MIR -64 198 14 248 320 33 47 chr4 104160563 104160713 -98167634 - MIR SINE MIR -2 260 113 322 302 63 11 chr4 104160752 104160941 -98167406 + MLT1K LTR MaLR 255 453 -135 913 235 8 47 chr4 104160952 104161207 -98167140 - L2 LINE L2 -632 2682 2438 859 255 153 20 chr4 104161251 104161643 -98166704 + MLT1L LTR MaLR 163 606 -9 921 175 30 86 chr4 104161913 104162182 -98166165 - MER112 DNA MER1_type -1 255 2 2182 134 0 0 chr4 104163164 104163471 -98164876 - AluSx SINE Alu -3 309 3 7634 20 6 1 chr4 104164086 104165125 -98163222 + L1PA3 LINE L1 5113 6155 0 1816 168 3 29 chr4 104165147 104165456 -98162891 + AluJo SINE Alu 1 301 -11 679 341 15 8 chr4 104166011 104166278 -98162069 + L3b LINE CR1 1110 1378 -205 444 258 40 53 chr4 104166769 104166811 -98161536 - MIR SINE MIR -73 189 148 2014 114 40 27 chr4 104166811 104167110 -98161237 - AluSx SINE Alu -9 303 1 444 258 40 53 chr4 104167110 104167218 -98161129 - MIR SINE MIR -114 148 41 216 0 0 0 chr4 104168077 104168101 -98160246 + (T)n Simple_repeat Simple_repeat 1 24 0 1314 206 24 7 chr4 104168379 104168666 -98159681 + MLT1A1 LTR MaLR 74 365 0 198 0 0 0 chr4 104169195 104169217 -98159130 + (TG)n Simple_repeat Simple_repeat 1 22 0 218 299 253 32 chr4 104169305 104169404 -98158943 + L3b LINE CR1 1193 1269 -314 1629 150 61 14 chr4 104169404 104169684 -98158663 + AluSx SINE Alu 1 293 -19 218 299 253 32 chr4 104169684 104169805 -98158542 + L3b LINE CR1 1269 1462 -121 1732 139 45 7 chr4 104170046 104170334 -98158013 + AluSx SINE Alu 1 299 -13 1950 130 14 3 chr4 104170459 104170751 -98157596 - AluSc SINE Alu -14 295 1 335 324 22 34 chr4 104171925 104172103 -98156244 + MER5A DNA MER1_type 1 184 -1 863 106 0 24 chr4 104172791 104172914 -98155433 + AluSq/x SINE Alu 1 120 -192 21 0 0 0 chr4 104173554 104173575 -98154772 + AT_rich Low_complexity Low_complexity 1 21 0 3058 146 83 24 chr4 104173858 104174194 -98154153 - MER50 LTR ERV1 -60 674 359 2322 99 39 14 chr4 104174194 104174558 -98153789 + THE1C LTR MaLR 3 375 0 3058 146 83 24 chr4 104174558 104174857 -98153490 - MER50 LTR ERV1 -375 359 1 22 0 0 0 chr4 104175183 104175205 -98153142 + AT_rich Low_complexity Low_complexity 1 22 0 1245 199 79 38 chr4 104175782 104176073 -98152274 - AluJo SINE Alu -9 303 1 21 0 0 0 chr4 104176756 104176777 -98151570 + AT_rich Low_complexity Low_complexity 1 21 0 1172 219 25 0 chr4 104178851 104179115 -98149232 + Zaphod DNA AcHobo 344 614 -3417 736 237 57 7 chr4 104179115 104179454 -98148893 + Charlie1 DNA MER1_type 3 2755 -6 387 204 25 80 chr4 104179464 104179533 -98148814 + Zaphod DNA AcHobo 639 710 -3321 2394 88 0 0 chr4 104179533 104179828 -98148519 - AluSx SINE Alu -16 296 2 387 204 25 80 chr4 104179828 104179920 -98148427 + Zaphod DNA AcHobo 710 791 -3240 5004 112 41 0 chr4 104179940 104180725 -98147622 + L1PA16 LINE L1 5335 6151 -15 360 157 69 74 chr4 104180725 104180941 -98147406 + Zaphod DNA AcHobo 774 988 -3043 895 230 6 76 chr4 104180943 104181300 -98147047 + Zaphod DNA AcHobo 3597 3928 -103 245 261 29 0 chr4 104181292 104181361 -98146986 + MER115 DNA AcHobo 621 691 -2 * 244 311 119 13 chr4 104181376 104181527 -98146820 - MIR SINE MIR -70 192 26 311 263 46 103 chr4 104181630 104181824 -98146523 - L1ME4a LINE L1 0 6121 5939 21 36 0 0 chr4 104181931 104181959 -98146388 + AT_rich Low_complexity Low_complexity 1 28 0 1827 179 0 10 chr4 104182017 104182330 -98146017 - AluJb SINE Alu 0 312 3 693 280 108 36 chr4 104182332 104182775 -98145572 - L1ME4a LINE L1 -352 5769 5295 233 238 59 30 chr4 104182864 104182965 -98145382 - L1ME4a LINE L1 -1 6120 6017 210 71 0 0 chr4 104183128 104183156 -98145191 + (CAT)n Simple_repeat Simple_repeat 3 30 0 2290 92 0 13 chr4 104183288 104183591 -98144756 - AluY SINE Alu -12 299 1 736 200 7 0 chr4 104183850 104183990 -98144357 - FLAM_C SINE Alu -2 141 1 594 276 69 58 chr4 104184966 104185635 -98142712 + L1ME3A LINE L1 5268 5933 -237 1997 130 3 10 chr4 104186064 104186365 -98141982 - AluSx SINE Alu -13 299 1 1846 149 0 77 chr4 104186490 104186826 -98141521 + AluJb SINE Alu 1 310 -2 23 33 0 0 chr4 104187089 104187119 -98141228 + AT_rich Low_complexity Low_complexity 1 30 0 456 19 0 0 chr4 104187198 104187251 -98141096 + (TGGA)n Simple_repeat Simple_repeat 4 56 0 599 258 53 47 chr4 104187750 104187940 -98140407 - MIR SINE MIR -70 192 2 941 192 33 28 chr4 104187958 104188172 -98140175 - MLT1A1 LTR MaLR -52 313 99 1876 143 50 0 chr4 104188185 104188465 -98139882 - AluJo SINE Alu -18 294 1 486 271 25 0 chr4 104188566 104188684 -98139663 + MIR SINE MIR 10 130 -132 934 258 59 56 chr4 104188704 104189130 -98139217 + MLT1J2 LTR MaLR 2 428 -22 1151 304 145 45 chr4 104189142 104189592 -98138755 + L2 LINE L2 1168 1572 -1742 2486 78 0 19 chr4 104189592 104189911 -98138436 - AluSq SINE Alu 0 313 1 1151 304 145 45 chr4 104189911 104190545 -98137802 + L2 LINE L2 1572 2360 -954 942 195 15 24 chr4 104190551 104190756 -98137591 + MLT1B LTR MaLR 1 203 -187 953 83 0 70 chr4 104191075 104191105 -98137242 + L1PA16 LINE L1 6017 6048 -118 3361 65 18 2 chr4 104191105 104191539 -98136808 - MLT2A1 LTR ERVL -3 441 1 953 83 0 70 chr4 104191539 104191665 -98136682 + L1PA16 LINE L1 6048 6162 -4 374 321 37 5 chr4 104191682 104191897 -98136450 - L1ME4a LINE L1 -310 5852 5631 364 234 0 0 chr4 104191988 104192065 -98136282 + L1ME LINE L1 5480 5556 -610 6731 29 0 0 chr4 104192634 104193455 -98134892 - L1PA3 LINE L1 0 6155 5335 * 16623 33 1 0 chr4 104193454 104195555 -98132792 + L1PA3 LINE L1 3248 5350 -796 3647 162 24 86 chr4 104195748 104196738 -98131609 - L1MB7 LINE L1 0 6184 5256 458 197 7 44 chr4 104196741 104196878 -98131469 - L1MEd LINE L1 -5023 1096 965 22 70 0 0 chr4 104196928 104196971 -98131376 + AT_rich Low_complexity Low_complexity 1 43 0 286 179 64 0 chr4 104196989 104197067 -98131280 + L1ME2 LINE L1 6082 6164 0 438 292 67 0 chr4 104199125 104199245 -98129102 + MER94 DNA DNA 7 134 0 2163 219 47 90 chr4 104200057 104200779 -98127568 + LTR8 LTR ERV1 1 691 0 215 282 0 51 chr4 104201096 104201174 -98127173 - L2 LINE L2 -285 2987 2914 443 322 72 14 chr4 104201226 104201434 -98126913 - L2 LINE L2 -484 2830 2611 260 241 147 52 chr4 104201484 104201600 -98126747 - L2 LINE L2 -213 3059 2933 200 328 0 0 chr4 104201681 104201745 -98126602 - L2 LINE L2 -557 2757 2694 431 253 99 39 chr4 104202078 104202260 -98126087 + MLT1L LTR MaLR 133 325 -290 1748 168 3 23 chr4 104202398 104202702 -98125645 + AluJo SINE Alu 1 298 -14 340 230 50 10 chr4 104203446 104203546 -98124801 + MER104 DNA Tc2 15 118 -62 1513 164 56 14 chr4 104204061 104204181 -98124166 + AluJo SINE Alu 1 115 -244 207 0 0 0 chr4 104204181 104204204 -98124143 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1513 164 56 14 chr4 104204204 104204430 -98123917 + AluJo SINE Alu 115 359 0 513 283 7 29 chr4 104204510 104204648 -98123699 - MIR3 SINE MIR -50 158 24 219 278 172 15 chr4 104205045 104205243 -98123104 + MIR SINE MIR 34 262 0 2200 95 7 0 chr4 104205634 104205938 -98122409 + AluY SINE Alu 1 306 -5 2058 119 6 10 chr4 104205977 104206288 -98122059 - AluSq SINE Alu -3 310 1 346 316 8 8 chr4 104206764 104206897 -98121450 - L1M4 LINE L1 -1863 4283 4151 418 125 94 0 chr4 104206920 104206984 -98121363 + AluJb SINE Alu 86 155 -157 1377 294 43 17 chr4 104207078 104207395 -98120952 - L1M4 LINE L1 -1314 4832 4525 1661 172 80 25 chr4 104207395 104207721 -98120626 + MER2 DNA MER2_type 1 344 0 1377 294 43 17 chr4 104207721 104208059 -98120288 - L1M4 LINE L1 -1621 4525 4160 21 0 0 0 chr4 104208060 104208081 -98120266 + AT_rich Low_complexity Low_complexity 1 21 0 1303 159 39 0 chr4 104208092 104208300 -98120047 + AluJb SINE Alu 86 301 -11 387 313 50 17 chr4 104208300 104208600 -98119747 - L1M4 LINE L1 -1998 4148 3839 1280 205 125 45 chr4 104208649 104209046 -98119301 - MSTB2 LTR MaLR 0 457 3 526 214 34 0 chr4 104209056 104209173 -98119174 - L1ME LINE L1 -611 5555 5435 25 0 0 0 chr4 104209417 104209442 -98118905 + AT_rich Low_complexity Low_complexity 1 25 0 223 190 86 0 chr4 104209586 104209644 -98118703 - L2 LINE L2 0 3272 3210 285 325 123 8 chr4 104210163 104210406 -98117941 - L2 LINE L2 -177 3095 2825 303 71 0 0 chr4 104210914 104210956 -98117391 + (TG)n Simple_repeat Simple_repeat 2 43 0 2538 137 16 58 chr4 104211834 104212266 -98116081 + MLT2D LTR ERVL 1 414 0 3469 251 83 47 chr4 104212283 104213393 -98114954 + L1MC4 LINE L1 6405 7582 -460 855 123 43 0 chr4 104213393 104213531 -98114816 + L1MC1 LINE L1 6190 6333 0 3469 251 83 47 chr4 104213531 104213881 -98114466 + L1MC4 LINE L1 7582 7918 -124 180 111 0 0 chr4 104213894 104213921 -98114426 + (CA)n Simple_repeat Simple_repeat 2 28 0 205 73 24 24 chr4 104213921 104213962 -98114385 + (GA)n Simple_repeat Simple_repeat 1 41 0 1252 241 49 63 chr4 104214226 104214732 -98113615 - LTR33 LTR ERVL 0 521 23 698 269 167 33 chr4 104215678 104216128 -98112219 - MLT1J LTR MaLR 0 511 2 1161 182 57 71 chr4 104216669 104216949 -98111398 + AluJo SINE Alu 1 276 -36 272 309 10 0 chr4 104217353 104217450 -98110897 + MIR3 SINE MIR 103 200 -8 2107 129 3 13 chr4 104217450 104217760 -98110587 + AluSx SINE Alu 1 307 -5 791 165 0 0 chr4 104218200 104218315 -98110032 + AluJb SINE Alu 2 116 -196 198 0 0 0 chr4 104218499 104218521 -98109826 + (T)n Simple_repeat Simple_repeat 1 22 0 4530 117 19 30 chr4 104219119 104219492 -98108855 + L1MA8 LINE L1 5553 5915 -376 8249 119 44 25 chr4 104219492 104219614 -98108733 + HSMAR2 DNA Mariner 1 119 -1183 2031 116 7 0 chr4 104219614 104219898 -98108449 + AluSg SINE Alu 20 305 -5 8249 119 44 25 chr4 104219898 104221050 -98107297 + HSMAR2 DNA Mariner 119 1299 -3 4530 117 19 30 chr4 104221050 104221423 -98106924 + L1MA8 LINE L1 5915 6291 0 420 258 254 19 chr4 104221448 104221716 -98106631 + MLT1H LTR MaLR 219 549 0 244 293 86 0 chr4 104221717 104221833 -98106514 - MIR SINE MIR -1 261 136 1684 267 39 60 chr4 104221924 104222223 -98106124 + L1MEc LINE L1 1208 1512 -4884 2059 118 7 26 chr4 104222223 104222528 -98105819 + AluSx SINE Alu 1 299 -13 1684 267 39 60 chr4 104222528 104222981 -98105366 + L1MEc LINE L1 1512 1944 -4452 225 251 96 63 chr4 104224119 104224170 -98104177 - L1ME4a LINE L1 -4 6117 6069 333 0 0 0 chr4 104224170 104224207 -98104140 + (CA)n Simple_repeat Simple_repeat 2 38 0 225 251 96 63 chr4 104224207 104224394 -98103953 - L1ME4a LINE L1 -52 6069 5871 1966 247 77 10 chr4 104224450 104224944 -98103403 + MLT1F LTR MaLR 14 540 -2 313 153 51 0 chr4 104224947 104225006 -98103341 + MLT1F-int LTR MaLR 2 63 -1308 332 177 38 25 chr4 104225054 104225133 -98103214 + L1P LINE L1 5167 5246 -900 188 289 0 0 chr4 104227048 104227100 -98101247 - L2 LINE L2 -20 3293 3242 363 338 19 19 chr4 104227653 104227813 -98100534 - MIR SINE MIR -20 242 83 1306 237 194 22 chr4 104227907 104228443 -98099904 + L1MC4a LINE L1 5313 5940 -1868 850 178 0 8 chr4 104228565 104228694 -98099653 - FLAM_A SINE Alu -5 128 1 344 312 32 0 chr4 104228996 104229121 -98099226 - MIR SINE MIR -29 233 105 21 0 0 0 chr4 104230091 104230112 -98098235 + AT_rich Low_complexity Low_complexity 1 21 0 904 255 122 21 chr4 104230177 104230718 -98097629 - L2 LINE L2 -17 3296 2702 52 14 0 14 chr4 104230720 104230757 -98097590 + AT_rich Low_complexity Low_complexity 1 38 -31 1707 183 3 0 chr4 104230757 104231042 -98097305 + AluJb SINE Alu 1 286 -26 52 14 0 14 chr4 104231042 104231074 -98097273 + AT_rich Low_complexity Low_complexity 38 69 0 1601 193 7 0 chr4 104231074 104231349 -98096998 - AluJo SINE Alu -30 282 6 199 229 0 0 chr4 104231409 104231457 -98096890 - L2 LINE L2 -609 2705 2658 423 241 68 139 chr4 104231458 104231755 -98096592 + MLT1F1 LTR MaLR 1 290 -277 672 285 25 30 chr4 104231893 104232128 -98096219 + MIR SINE MIR 11 244 -18 225 163 41 0 chr4 104232946 104232995 -98095352 + (TA)n Simple_repeat Simple_repeat 1 51 0 2204 110 0 0 chr4 104233060 104233352 -98094995 - AluSx SINE Alu -20 292 1 1480 252 37 35 chr4 104234203 104234659 -98093688 + LTR16A1 LTR ERVL 1 457 0 569 201 121 11 chr4 104234925 104235099 -98093248 + L1ME LINE L1 5285 5477 -2331 805 290 51 44 chr4 104235685 104235978 -98092369 + MLT1I LTR MaLR 99 393 -16 2204 122 0 3 chr4 104236107 104236411 -98091936 + AluSx SINE Alu 1 303 -9 365 220 14 142 chr4 104236570 104236633 -98091714 + L1MC4a LINE L1 6445 6482 -1326 8093 34 0 0 chr4 104236633 104237937 -98090410 + L1PA5 LINE L1 4852 6154 0 365 220 14 142 chr4 104237937 104238014 -98090333 + L1MC4a LINE L1 6482 6567 -1241 1688 166 56 83 chr4 104238130 104238503 -98089844 + MLT1A1 LTR MaLR 3 365 0 2126 94 20 24 chr4 104238583 104238881 -98089466 + AluY SINE Alu 2 298 -13 1287 123 0 0 chr4 104238881 104239060 -98089287 + AluSp SINE Alu 134 312 -1 27 29 0 0 chr4 104239092 104239126 -98089221 + AT_rich Low_complexity Low_complexity 1 34 0 457 106 0 220 chr4 104239162 104239294 -98089053 - FRAM SINE Alu 0 176 74 1114 108 0 0 chr4 104239397 104239536 -98088811 + AluSg/x SINE Alu 157 295 -17 1828 141 0 28 chr4 104239841 104240125 -98088222 + AluJb SINE Alu 12 287 -25 1743 175 28 21 chr4 104240131 104240457 -98087890 - L1MC1 LINE L1 -11 6322 5995 399 264 100 7 chr4 104240660 104240800 -98087547 + L1ME LINE L1 5491 5643 -478 2167 142 0 0 chr4 104241146 104241457 -98086890 - AluSx SINE Alu -1 311 1 2141 114 3 7 chr4 104241511 104241865 -98086482 + AluSp SINE Alu 3 313 0 334 356 89 55 chr4 104241939 104242175 -98086172 + L2 LINE L2 2995 3238 -34 657 236 19 0 chr4 104243484 104243641 -98084706 - MER103 DNA DNA 0 166 7 266 271 114 57 chr4 104243676 104243816 -98084531 - MIR3 SINE MIR -45 163 16 2231 92 14 0 chr4 104243981 104244276 -98084071 + AluSx SINE Alu 1 299 -13 2384 95 3 0 chr4 104244282 104244587 -98083760 + AluSp SINE Alu 1 306 -7 1166 143 113 0 chr4 104244688 104244891 -98083456 - L1MC1 LINE L1 -340 5993 5768 2198 93 10 22 chr4 104244931 104245242 -98083105 - AluSg SINE Alu -3 307 1 25 0 0 0 chr4 104245449 104245474 -98082873 + AT_rich Low_complexity Low_complexity 1 25 0 1394 171 107 18 chr4 104245717 104245997 -98082350 + AluJo SINE Alu 4 308 -4 2387 81 0 3 chr4 104246099 104246395 -98081952 - AluSx SINE Alu -16 296 2 2042 134 7 3 chr4 104246720 104247026 -98081321 - AluSc SINE Alu -2 307 1 2173 123 10 0 chr4 104247038 104247348 -98080999 - AluSq SINE Alu 0 313 1 728 270 0 0 chr4 104247620 104247798 -98080549 + L1PB4 LINE L1 5977 6154 -2 293 366 0 20 chr4 104248023 104248124 -98080223 + L2 LINE L2 3174 3272 0 2034 124 0 7 chr4 104248502 104248787 -98079560 + AluSx SINE Alu 3 321 0 212 28 56 0 chr4 104248787 104248823 -98079524 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 268 293 10 30 chr4 104249108 104249207 -98079140 + MIR3 SINE MIR 111 207 -1 229 279 33 107 chr4 104250005 104250127 -98078220 + MIR SINE MIR 25 137 -71 1957 168 60 19 chr4 104250165 104250581 -98077766 - L1MB8 LINE L1 -5 6173 5741 1475 272 47 83 chr4 104250786 104251097 -98077250 + L2 LINE L2 784 1105 -2209 210 37 0 0 chr4 104251097 104251124 -98077223 + (CAT)n Simple_repeat Simple_repeat 1 27 0 1475 272 47 83 chr4 104251124 104251574 -98076773 + L2 LINE L2 1105 1518 -1796 209 271 0 0 chr4 104251688 104251736 -98076611 + L2 LINE L2 1533 1580 -1734 382 197 86 0 chr4 104251753 104251870 -98076477 + HAL1 LINE L1 2051 2177 -330 338 164 75 0 chr4 104251873 104251940 -98076407 - HAL1 LINE L1 -214 2293 2222 636 122 24 8 chr4 104252073 104252196 -98076151 + A-rich Low_complexity Low_complexity 2 126 0 3011 243 64 29 chr4 104252196 104253051 -98075296 - HERVL40 LTR ERVL -873 4657 3773 548 250 35 0 chr4 104253058 104253202 -98075145 - LTR40a LTR ERVL -351 168 20 234 250 0 0 chr4 104253256 104253328 -98075019 + (TA)n Simple_repeat Simple_repeat 2 73 0 2229 129 3 0 chr4 104253353 104253662 -98074685 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr4 104253670 104253691 -98074656 + AT_rich Low_complexity Low_complexity 1 21 0 1844 217 58 45 chr4 104253712 104254334 -98074013 + L1MC4 LINE L1 7413 8042 0 395 300 79 26 chr4 104254351 104254541 -98073806 + L1MC4a LINE L1 4399 4598 -1548 1013 174 0 6 chr4 104254716 104254732 -98073615 - FRAM SINE Alu -136 166 151 393 22 0 0 chr4 104254732 104254778 -98073569 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 1013 174 0 6 chr4 104254778 104254928 -98073419 - FRAM SINE Alu -151 151 1 660 268 37 16 chr4 104254929 104255172 -98073175 + L1MC4a LINE L1 5616 5863 -1945 24 32 0 0 chr4 104255838 104255869 -98072478 + AT_rich Low_complexity Low_complexity 1 31 0 1904 173 3 0 chr4 104256105 104256400 -98071947 + AluJo SINE Alu 1 296 -16 277 162 29 0 chr4 104256829 104256897 -98071450 + (TA)n Simple_repeat Simple_repeat 1 70 0 396 0 0 0 chr4 104256936 104256980 -98071367 + (TG)n Simple_repeat Simple_repeat 2 45 0 1749 133 0 54 chr4 104257763 104258057 -98070290 - AluSx SINE Alu -34 278 1 198 0 0 0 chr4 104258190 104258212 -98070135 + (A)n Simple_repeat Simple_repeat 1 22 0 1503 251 58 6 chr4 104258221 104258718 -98069629 + L1ME3 LINE L1 5557 6079 -83 269 264 69 0 chr4 104258723 104258795 -98069552 - L2 LINE L2 -1511 1803 1727 732 296 164 16 chr4 104258806 104259178 -98069169 - L2 LINE L2 -1783 1531 1105 405 310 75 0 chr4 104259238 104259412 -98068935 - L1MC4a LINE L1 -1142 6666 6480 303 203 76 0 chr4 104259680 104259759 -98068588 - L1MC4a LINE L1 -1676 6132 6048 291 243 47 19 chr4 104260059 104260166 -98068181 + L1MC4 LINE L1 7275 7384 -658 227 263 53 9 chr4 104260194 104260308 -98068039 + L1MC5 LINE L1 7264 7382 -579 777 183 133 22 chr4 104260470 104260837 -98067510 + Zaphod DNA AcHobo 565 972 -3059 763 110 9 0 chr4 104260879 104260988 -98067359 + FRAM SINE Alu 43 152 -24 369 0 0 0 chr4 104260989 104261030 -98067317 + (CA)n Simple_repeat Simple_repeat 2 42 0 2380 82 3 0 chr4 104261118 104261423 -98066924 + AluSp SINE Alu 1 306 -7 733 197 97 97 chr4 104261531 104261731 -98066616 + Zaphod DNA AcHobo 3733 3935 -96 1832 165 23 3 chr4 104261731 104262034 -98066313 - AluJb SINE Alu -3 309 1 733 197 97 97 chr4 104262034 104262132 -98066215 + Zaphod DNA AcHobo 3934 4031 0 259 306 22 55 chr4 104262142 104262325 -98066022 + HAL1b LINE L1 436 612 -736 2100 120 0 3 chr4 104262616 104262916 -98065431 + AluSx SINE Alu 14 312 0 411 335 107 29 chr4 104263438 104263748 -98064599 + HAL1 LINE L1 1116 1449 -1058 586 198 38 0 chr4 104264081 104264187 -98064160 + FLAM_C SINE Alu 4 113 -30 2188 117 0 0 chr4 104264389 104264688 -98063659 + AluSq SINE Alu 1 299 -14 21 57 0 0 chr4 104265127 104265162 -98063185 + AT_rich Low_complexity Low_complexity 1 35 0 528 211 260 20 chr4 104266206 104266410 -98061937 + MER5C DNA MER1_type 1 253 -71 424 182 0 0 chr4 104266424 104266500 -98061847 + AluJ/FLAM SINE Alu 1 69 -233 732 169 0 8 chr4 104266500 104266618 -98061729 + AluJo/FRAM SINE Alu 173 289 -23 760 271 67 0 chr4 104266688 104266913 -98061434 + MIR SINE MIR 22 261 -1 200 245 0 19 chr4 104266954 104267007 -98061340 - L2 LINE L2 -7 3306 3255 26 0 0 0 chr4 104267034 104267060 -98061287 + AT_rich Low_complexity Low_complexity 1 26 0 205 228 18 35 chr4 104267658 104267715 -98060632 + MIR SINE MIR 85 140 -122 305 253 42 32 chr4 104268792 104268887 -98059460 - MER94 DNA DNA -34 100 5 2317 229 81 1 chr4 104270342 104271070 -98057277 - L1MCb LINE L1 -3212 3352 2567 652 178 13 33 chr4 104271069 104271221 -98057126 - L1MCb LINE L1 -5677 368 220 * 979 107 0 25 chr4 104271852 104272011 -98056336 + MER41A LTR ERV1 400 554 0 4470 118 10 17 chr4 104272011 104272706 -98055641 + MER41A-int LTR ERV1 1 690 -5256 2071 152 45 3 chr4 104272707 104273063 -98055284 + MER41A-int LTR ERV1 1392 1762 -4184 722 95 17 17 chr4 104273064 104273180 -98055167 + MER41A-int LTR ERV1 2511 2626 -4911 * 4653 117 35 14 chr4 104273179 104273845 -98054502 + MER41-int LTR ERV1 2167 2853 -3093 2504 73 0 0 chr4 104273845 104274147 -98054200 + AluY SINE Alu 1 302 -9 4653 117 35 14 chr4 104274147 104274244 -98054103 + MER41-int LTR ERV1 2853 2946 -3000 * 11904 96 30 38 chr4 104274233 104274310 -98054037 + MER41-int LTR ERV1 4097 4173 -1773 240 59 0 0 chr4 104274310 104274344 -98054003 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 11904 96 30 38 chr4 104274344 104274391 -98053956 + MER41-int LTR ERV1 4173 4219 -1727 2212 119 0 0 chr4 104274391 104274684 -98053663 + AluSg SINE Alu 3 295 -15 11904 96 30 38 chr4 104274684 104276099 -98052248 + MER41-int LTR ERV1 4219 5188 -758 2094 137 0 0 chr4 104276099 104276384 -98051963 + AluSx SINE Alu 1 285 -27 11904 96 30 38 chr4 104276384 104277135 -98051212 + MER41-int LTR ERV1 5188 5944 -2 3270 66 21 26 chr4 104277135 104277604 -98050743 + MER41A LTR ERV1 1 467 -87 2270 176 92 2 chr4 104277653 104278177 -98050170 + L1M4 LINE L1 4742 5312 -834 * 3304 151 91 43 chr4 104278175 104278552 -98049795 + L1MC3 LINE L1 6708 7066 -719 1924 170 42 52 chr4 104278552 104278952 -98049395 + MSTD LTR MaLR 1 396 0 3304 151 91 43 chr4 104278952 104279334 -98049013 + L1MC3 LINE L1 7066 7503 -282 24 96 0 0 chr4 104279518 104279591 -98048756 + AT_rich Low_complexity Low_complexity 1 73 0 233 287 96 37 chr4 104279591 104279727 -98048620 - MIR SINE MIR -2 260 117 480 35 0 0 chr4 104280689 104280747 -98047600 + (TG)n Simple_repeat Simple_repeat 1 58 0 2056 137 0 6 chr4 104281360 104281702 -98046645 - L1MA2 LINE L1 0 6304 5965 661 255 147 10 chr4 104282066 104282270 -98046077 - MIR SINE MIR -20 242 11 205 267 160 33 chr4 104282554 104282704 -98045643 + L2 LINE L2 2908 3076 -196 248 226 6 6 chr4 104282713 104282786 -98045561 - L1MDa LINE L1 -3887 2497 2425 * 947 121 38 0 chr4 104282783 104282940 -98045407 + L1PB4 LINE L1 5810 5972 -184 807 189 89 6 chr4 104283251 104283431 -98044916 - MIR SINE MIR -5 257 63 402 259 63 92 chr4 104283633 104283841 -98044506 + L1MC4a LINE L1 5265 5470 -701 773 241 167 72 chr4 104283865 104284359 -98043988 + L2 LINE L2 2776 3312 -1 434 288 78 41 chr4 104284530 104284801 -98043546 + L1MC4a LINE L1 5652 5932 -1876 259 227 0 45 chr4 104284977 104285043 -98043304 + MLT1L LTR MaLR 1 63 -552 312 276 87 41 chr4 104285100 104285296 -98043051 + MLT1L LTR MaLR 190 394 -221 248 224 48 80 chr4 104285348 104285473 -98042874 + MLT1L LTR MaLR 492 612 -3 1774 152 0 54 chr4 104285519 104285835 -98042512 + AluJb SINE Alu 1 299 -13 21 0 0 0 chr4 104285976 104285997 -98042350 + AT_rich Low_complexity Low_complexity 1 21 0 2187 114 0 29 chr4 104286145 104286460 -98041887 + AluSp SINE Alu 1 306 -7 578 139 93 9 chr4 104286796 104286904 -98041443 + FLAM_C SINE Alu 2 118 -15 214 223 11 43 chr4 104286913 104287007 -98041340 + A-rich Low_complexity Low_complexity 4 94 0 1534 174 110 31 chr4 104287249 104287668 -98040679 + LTR10A LTR ERV1 97 548 -61 2195 92 41 0 chr4 104288036 104288328 -98040019 - AluSp SINE Alu -9 304 1 736 187 32 0 chr4 104288383 104288506 -98039841 + AluJb SINE Alu 1 127 -185 945 166 47 130 chr4 104288682 104288795 -98039552 + L1MC4 LINE L1 7703 7824 -218 2236 94 0 7 chr4 104288795 104289093 -98039254 + AluSc SINE Alu 1 296 -13 945 166 47 130 chr4 104289093 104289213 -98039134 + L1MC4 LINE L1 7824 7952 -90 681 191 15 37 chr4 104289213 104289349 -98038998 + FLAM_C SINE Alu 1 133 0 945 166 47 130 chr4 104289349 104289423 -98038924 + L1MC4 LINE L1 7952 7979 -63 2287 103 0 0 chr4 104289423 104289714 -98038633 + AluSp SINE Alu 2 292 -21 945 166 47 130 chr4 104289714 104289766 -98038581 + L1MC4 LINE L1 7979 8034 -8 2403 55 10 0 chr4 104289802 104290125 -98038222 + AluY SINE Alu 1 326 0 1208 182 5 5 chr4 104290455 104290658 -98037689 + AluJo SINE Alu 4 206 -106 252 308 37 19 chr4 104290714 104290821 -98037526 + L2 LINE L2 3185 3293 -20 263 277 223 0 chr4 104290860 104290954 -98037393 + L2 LINE L2 3199 3313 0 180 111 0 0 chr4 104291586 104291613 -98036734 + (GAA)n Simple_repeat Simple_repeat 2 28 0 959 184 7 0 chr4 104291616 104291768 -98036579 + FAM SINE Alu 10 162 -23 504 269 0 19 chr4 104291769 104291925 -98036422 - MER112 DNA MER1_type -78 182 30 781 139 192 0 chr4 104292182 104292354 -98035993 + MER3 DNA MER1_type 5 209 0 723 75 8 33 chr4 104292399 104292519 -98035828 + L1MA5 LINE L1 6162 6278 -22 326 287 0 32 chr4 104292531 104292625 -98035722 + MER5A DNA MER1_type 5 95 -94 524 245 207 58 chr4 104292805 104293274 -98035073 + MER20B DNA MER1_type 179 717 -66 609 313 48 26 chr4 104293776 104294006 -98034341 - MIR SINE MIR -8 254 20 723 195 41 35 chr4 104294846 104295015 -98033332 - MER58B DNA MER1_type -4 337 168 5114 76 17 0 chr4 104295025 104295720 -98032627 + L1PA13 LINE L1 5456 6162 -1 2284 89 20 0 chr4 104296195 104296499 -98031848 + AluSp SINE Alu 1 310 -3 2087 108 17 17 chr4 104296948 104297245 -98031102 - AluSg SINE Alu -13 297 1 2277 110 0 7 chr4 104297460 104297770 -98030577 - AluSx SINE Alu -4 308 1 1128 306 48 99 chr4 104298245 104298559 -98029788 + AluSc SINE Alu 1 298 -1 2338 98 3 0 chr4 104298663 104298960 -98029387 - AluSx SINE Alu -14 298 1 282 298 75 0 chr4 104298994 104299088 -98029259 + L2 LINE L2 3200 3300 -13 212 219 31 16 chr4 104299591 104299655 -98028692 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 801 178 0 7 chr4 104299658 104299793 -98028554 - AluJo SINE Alu -178 134 1 1370 196 116 13 chr4 104300198 104300509 -98027838 - MER7A DNA MER2_type -4 342 2 256 267 53 19 chr4 104300738 104300884 -98027463 + MIR SINE MIR 31 232 -30 512 83 4 10 chr4 104301060 104301312 -98027035 + AluY SINE Alu 1 305 -6 21 71 0 0 chr4 104304100 104304142 -98024205 + AT_rich Low_complexity Low_complexity 1 42 0 283 283 9 28 chr4 104304148 104304254 -98024093 - L2 LINE L2 -70 3243 3140 194 397 86 0 chr4 104304692 104304808 -98023539 - L2 LINE L2 -410 2904 2779 2356 62 0 17 chr4 104304816 104305108 -98023239 + AluY SINE Alu 1 287 -24 1684 184 14 3 chr4 104305296 104305584 -98022763 + AluJb SINE Alu 7 297 -15 1788 160 0 17 chr4 104305951 104306260 -98022087 + AluSx SINE Alu 1 304 0 1732 176 0 14 chr4 104306974 104307269 -98021078 - AluJb SINE Alu -8 304 14 723 96 6 121 chr4 104307282 104307439 -98020908 - L1MB2 LINE L1 -1 6170 6032 1049 138 38 0 chr4 104307533 104307692 -98020655 + FRAM SINE Alu 1 161 -15 226 318 118 0 chr4 104307723 104307808 -98020539 - L2 LINE L2 -19 3294 3200 1580 188 7 14 chr4 104307965 104308252 -98020095 + AluJo SINE Alu 4 288 -24 245 241 37 120 chr4 104308851 104308959 -98019388 + MIR SINE MIR 12 110 -152 270 0 0 0 chr4 104309852 104309882 -98018465 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 201 370 22 11 chr4 104310049 104310141 -98018206 - MER5A DNA MER1_type -51 138 46 2434 68 3 0 chr4 104310409 104310702 -98017645 + AluSg SINE Alu 1 294 -16 687 194 22 15 chr4 104312026 104312160 -98016187 - AluJo SINE Alu -177 135 1 1744 168 92 40 chr4 104312853 104313333 -98015014 + L1MB2 LINE L1 5640 6144 -27 1979 104 91 0 chr4 104313595 104313882 -98014465 + AluSp SINE Alu 1 313 0 2153 121 0 10 chr4 104313927 104314234 -98014113 + AluSx SINE Alu 1 304 -8 14291 129 34 14 chr4 104314501 104316850 -98011497 - Tigger1 DNA MER2_type -1 2417 21 1528 184 0 48 chr4 104317299 104317446 -98010901 + AluJo SINE Alu 1 131 -181 2353 65 0 0 chr4 104317446 104317756 -98010591 + AluSc SINE Alu 1 310 0 1528 184 0 48 chr4 104317756 104317900 -98010447 + AluJo SINE Alu 131 280 -32 1286 196 0 65 chr4 104317936 104318227 -98010120 + AluJo SINE Alu 40 311 -1 1184 195 99 18 chr4 104318227 104318499 -98009848 + AluJb SINE Alu 2 295 -7 1082 201 106 53 chr4 104318565 104318819 -98009528 + Charlie1a DNA MER1_type 1 275 -2486 2117 113 20 0 chr4 104318819 104319111 -98009236 + AluSq SINE Alu 1 298 -15 1082 201 106 53 chr4 104319111 104319159 -98009188 + Charlie1a DNA MER1_type 275 319 -1136 2711 177 40 103 chr4 104319252 104319857 -98008490 + Charlie1a DNA MER1_type 605 1134 -1627 1791 88 131 4 chr4 104319857 104320117 -98008230 + AluSg SINE Alu 1 293 -17 2711 177 40 103 chr4 104320117 104320420 -98007927 + Charlie1a DNA MER1_type 1134 1455 0 567 291 152 48 chr4 104320756 104321257 -98007090 + L1MC4a LINE L1 5288 5840 -1968 22 56 0 0 chr4 104322007 104322043 -98006304 + AT_rich Low_complexity Low_complexity 1 36 0 365 307 113 70 chr4 104322500 104322731 -98005616 + L2 LINE L2 1820 2040 -1274 2135 97 0 42 chr4 104322731 104323040 -98005307 - AluSq SINE Alu -16 297 2 365 307 113 70 chr4 104323040 104323365 -98004982 + L2 LINE L2 2040 2400 -914 2235 99 0 10 chr4 104323605 104323899 -98004448 - AluSg SINE Alu -18 292 2 622 161 0 81 chr4 104324246 104324397 -98003950 + FLAM_A SINE Alu 2 142 0 1289 218 4 4 chr4 104324748 104325023 -98003324 + AluSp SINE Alu 39 313 0 26 82 0 0 chr4 104325402 104325463 -98002884 + AT_rich Low_complexity Low_complexity 1 61 0 234 0 0 0 chr4 104325613 104325639 -98002708 + (CA)n Simple_repeat Simple_repeat 2 27 0 2108 79 76 3 chr4 104325822 104326137 -98002210 + HSMAR1 DNA Mariner 2 339 -948 * 3137 97 0 0 chr4 104326128 104326531 -98001816 + HSMAR1 DNA Mariner 595 997 -290 1183 106 34 0 chr4 104326532 104326711 -98001636 + HSMAR1 DNA Mariner 1102 1286 -1 1720 228 60 41 chr4 104326912 104327378 -98000969 + MLT1E2 LTR MaLR 1 475 -151 252 348 50 0 chr4 104327431 104327612 -98000735 - L1 LINE L1 -2196 3950 3761 2080 107 45 0 chr4 104327612 104327902 -98000445 - AluSp SINE Alu -8 305 3 714 233 55 28 chr4 104328009 104328309 -98000038 - L1MEc LINE L1 -3799 2416 2152 * 1790 268 81 31 chr4 104328303 104328719 -97999628 - L1ME LINE L1 -691 5473 5079 2821 65 8 0 chr4 104328719 104329071 -97999276 + THE1A LTR MaLR 1 355 0 11532 90 17 1 chr4 104329071 104330626 -97997721 + THE1A-int LTR MaLR 1 1580 0 2658 72 6 17 chr4 104330626 104330985 -97997362 + THE1A LTR MaLR 1 355 0 1790 268 81 31 chr4 104330985 104332142 -97996205 - L1ME LINE L1 -1084 5080 3775 3787 117 2 2 chr4 104332145 104332692 -97995655 - MER41B LTR ERV1 -88 547 1 18892 99 25 12 chr4 104332694 104335553 -97992794 - MER41B-int LTR ERV1 -3 5943 3050 397 161 0 0 chr4 104335553 104335615 -97992732 + AluS SINE Alu 2 63 -245 794 119 14 70 chr4 104335615 104335758 -97992589 - MER41B-int LTR ERV1 -4622 2915 2781 * 990 95 12 54 chr4 104335757 104335925 -97992422 - MER41B-int LTR ERV1 -4159 2104 1944 * 2134 119 82 0 chr4 104335905 104336258 -97992089 - MER41B-int LTR ERV1 -4172 1774 1393 4770 106 22 19 chr4 104336260 104336948 -97991399 - MER41B-int LTR ERV1 -5256 690 1 984 112 26 7 chr4 104336948 104337100 -97991247 - MER41B LTR ERV1 0 554 400 1065 269 58 63 chr4 104337102 104337158 -97991189 - L1ME LINE L1 -2352 3794 3739 2454 63 3 3 chr4 104337158 104337459 -97990888 + AluSp SINE Alu 1 301 -12 1065 269 58 63 chr4 104337459 104338237 -97990110 - L1ME LINE L1 -2407 3739 2965 665 199 45 19 chr4 104338277 104338433 -97989914 + L2 LINE L2 3153 3312 -1 898 145 8 0 chr4 104338450 104338581 -97989766 + FRAM SINE Alu 18 149 -27 1126 91 6 6 chr4 104338581 104338756 -97989591 + (GGAA)n Simple_repeat Simple_repeat 3 177 0 629 134 14 28 chr4 104338791 104338933 -97989414 + GA-rich Low_complexity Low_complexity 1 140 0 884 275 95 38 chr4 104338945 104339456 -97988891 - L2 LINE L2 -176 3137 2597 317 279 214 7 chr4 104339456 104339610 -97988737 - L2 LINE L2 -1492 1822 1637 695 201 7 14 chr4 104340161 104340300 -97988047 - MER20 DNA MER1_type 0 219 82 416 100 0 17 chr4 104340373 104340433 -97987914 - MER20 DNA MER1_type -160 59 1 2084 118 17 0 chr4 104340461 104340757 -97987590 + AluSx SINE Alu 1 301 -11 857 262 113 8 chr4 104341177 104341539 -97986808 + L1ME3 LINE L1 4671 5070 -1076 21 0 0 0 chr4 104341577 104341598 -97986749 + AT_rich Low_complexity Low_complexity 1 21 0 855 142 0 0 chr4 104341628 104341748 -97986599 + FLAM_C SINE Alu 1 120 -23 2061 266 57 23 chr4 104341773 104341995 -97986352 + L1ME3 LINE L1 5195 5408 -754 1846 148 7 3 chr4 104341995 104342285 -97986062 + AluSq SINE Alu 1 291 -22 2061 266 57 23 chr4 104342285 104342394 -97985953 + L1ME3 LINE L1 5408 5512 -650 1459 64 11 0 chr4 104342394 104342581 -97985766 + AluSp SINE Alu 122 310 -3 2061 266 57 23 chr4 104342581 104343060 -97985287 + L1ME3 LINE L1 5512 6051 -111 2205 98 0 0 chr4 104343199 104343476 -97984871 + AluSx SINE Alu 15 291 -21 382 191 0 0 chr4 104343487 104343571 -97984776 + HAL1 LINE L1 977 1060 -1447 1060 278 133 33 chr4 104343754 104344272 -97984075 + HAL1 LINE L1 1309 1878 -629 459 0 0 0 chr4 104344360 104344411 -97983936 + (CA)n Simple_repeat Simple_repeat 2 52 0 1892 133 36 0 chr4 104345070 104345349 -97982998 + AluSx SINE Alu 1 289 -23 2180 114 19 3 chr4 104345358 104345665 -97982682 + AluSq SINE Alu 2 313 0 578 276 84 11 chr4 104345842 104346103 -97982244 + L1MC4a LINE L1 5641 5920 -1888 1906 124 13 10 chr4 104346305 104346603 -97981744 + AluSc SINE Alu 3 301 -8 183 42 0 0 chr4 104346610 104346634 -97981713 + (A)n Simple_repeat Simple_repeat 1 24 0 1229 167 22 45 chr4 104346961 104347230 -97981117 - AluSx SINE Alu -6 306 44 1762 186 0 16 chr4 104347315 104347632 -97980715 - AluJb SINE Alu 0 312 1 2293 113 0 0 chr4 104347801 104348112 -97980235 + AluSx SINE Alu 1 311 -1 23 68 0 0 chr4 104348200 104348244 -97980103 + AT_rich Low_complexity Low_complexity 1 44 0 692 207 0 15 chr4 104348432 104348567 -97979780 - FLAM_C SINE Alu 0 133 1 181 68 45 45 chr4 104349109 104349153 -97979194 + A-rich Low_complexity Low_complexity 4 47 0 2371 50 0 3 chr4 104350465 104350747 -97977600 + AluY SINE Alu 1 281 -30 294 0 0 26 chr4 104350747 104350785 -97977562 + (CAAAA)n Simple_repeat Simple_repeat 4 60 0 416 311 24 24 chr4 104351300 104351464 -97976883 + MIR3 SINE MIR 42 205 -3 234 291 18 73 chr4 104352788 104352898 -97975449 + L2 LINE L2 3169 3272 0 331 328 85 8 chr4 104352931 104353178 -97975169 - L1ME LINE L1 -470 5651 5386 235 188 21 0 chr4 104353183 104353231 -97975116 + (TA)n Simple_repeat Simple_repeat 1 49 0 536 281 82 47 chr4 104353347 104353980 -97974367 - L1ME LINE L1 -1829 4317 3663 971 143 51 11 chr4 104354451 104354626 -97973721 + MSTD LTR MaLR 215 396 0 209 204 0 37 chr4 104354883 104354937 -97973410 + CT-rich Low_complexity Low_complexity 3 54 0 3054 105 53 4 chr4 104355802 104356277 -97972070 - L1PA13 LINE L1 -219 5942 5445 1271 142 32 20 chr4 104356277 104356504 -97971843 + L1PA13 LINE L1 5914 6163 0 213 234 109 0 chr4 104358079 104358143 -97970204 - MIR SINE MIR -126 136 66 383 309 72 19 chr4 104359759 104359966 -97968381 - MIR SINE MIR 0 262 45 553 296 57 10 chr4 104360552 104360849 -97967498 - L1ME LINE L1 -344 5777 5467 201 237 0 0 chr4 104360994 104361032 -97967315 + (ATG)n Simple_repeat Simple_repeat 2 39 0 540 0 0 0 chr4 104361056 104361116 -97967231 + (TA)n Simple_repeat Simple_repeat 1 60 0 395 331 50 6 chr4 104361179 104361360 -97966987 + MIR SINE MIR 53 241 -21 183 42 0 0 chr4 104361691 104361715 -97966632 + (A)n Simple_repeat Simple_repeat 1 24 0 2404 97 0 0 chr4 104361907 104362216 -97966131 - AluSx SINE Alu -3 309 1 702 210 81 11 chr4 104362241 104362427 -97965920 - MER3 DNA MER1_type -5 204 6 397 154 0 111 chr4 104362589 104362654 -97965693 + Charlie4 DNA MER1_type 1821 1869 -92 2226 111 24 0 chr4 104362654 104362952 -97965395 - AluSq SINE Alu -8 305 1 397 154 0 111 chr4 104362952 104363003 -97965344 + Charlie4 DNA MER1_type 1869 1924 -37 341 113 38 88 chr4 104363371 104363451 -97964896 + LTR10A LTR ERV1 473 548 -61 1019 142 0 0 chr4 104363773 104363914 -97964433 - AluSq SINE Alu -60 253 113 401 292 241 41 chr4 104364492 104364633 -97963714 + MIR SINE MIR 8 120 -142 2408 80 7 0 chr4 104364633 104364935 -97963412 + AluSg SINE Alu 1 304 -6 401 292 241 41 chr4 104364935 104364988 -97963359 + MIR SINE MIR 119 241 -21 2298 98 6 13 chr4 104365194 104365509 -97962838 - AluSp SINE Alu 0 313 1 1780 172 17 0 chr4 104365667 104365969 -97962378 - AluJb SINE Alu -5 307 1 2323 104 0 3 chr4 104366428 104366735 -97961612 - AluSg SINE Alu -4 306 1 2236 100 10 7 chr4 104366942 104367252 -97961095 - AluSx SINE Alu 0 312 2 21 36 0 0 chr4 104367675 104367703 -97960644 + AT_rich Low_complexity Low_complexity 1 28 0 1726 158 4 4 chr4 104368242 104368520 -97959827 + AluJo SINE Alu 1 278 -34 2370 71 3 0 chr4 104368619 104368914 -97959433 + AluSp SINE Alu 1 296 -17 2551 68 3 0 chr4 104369733 104370043 -97958304 + AluSx SINE Alu 2 312 0 180 0 0 0 chr4 104371655 104371675 -97956672 + (T)n Simple_repeat Simple_repeat 1 20 0 325 338 20 17 chr4 104372334 104372481 -97955866 + MIR SINE MIR 30 175 -56 2355 94 0 0 chr4 104373212 104373511 -97954836 + AluSx SINE Alu 1 299 -13 608 145 8 0 chr4 104373674 104373791 -97954556 + C-rich Low_complexity Low_complexity 2 119 0 366 23 0 0 chr4 104373810 104373853 -97954494 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 1646 161 11 14 chr4 104373863 104374142 -97954205 - AluJo SINE Alu -34 278 1 1982 82 82 0 chr4 104374298 104374578 -97953769 + AluY SINE Alu 1 303 -8 479 282 43 38 chr4 104375219 104375428 -97952919 + L2 LINE L2 2996 3205 -108 1556 94 75 0 chr4 104375521 104375733 -97952614 - AluSg SINE Alu -75 235 8 24 0 0 0 chr4 104375865 104375889 -97952458 + AT_rich Low_complexity Low_complexity 1 24 0 1627 201 13 10 chr4 104376091 104376390 -97951957 - AluJo SINE Alu -12 300 1 301 286 107 0 chr4 104376487 104376599 -97951748 - L1MC4 LINE L1 0 8042 7919 618 213 0 0 chr4 104376604 104376731 -97951616 - L1MC4 LINE L1 -147 7895 7769 286 236 0 0 chr4 104376800 104376855 -97951492 - L1MC4 LINE L1 -569 7473 7419 258 330 0 0 chr4 104376870 104376967 -97951380 - L1MC/D LINE L1 -2000 5808 5712 319 269 54 11 chr4 104377249 104377342 -97951005 - L1MC4 LINE L1 -3 8039 7943 2071 122 10 3 chr4 104377363 104377659 -97950688 + AluSx SINE Alu 1 298 -14 1159 251 44 74 chr4 104377735 104377845 -97950502 + HERV16 LTR ERVL 1582 1694 -3302 638 158 92 8 chr4 104377845 104377965 -97950382 + FLAM_C SINE Alu 1 130 -3 1159 251 44 74 chr4 104377965 104378329 -97950018 + HERV16 LTR ERVL 1694 2042 -2954 1013 128 43 5 chr4 104378401 104378588 -97949759 + Tigger2 DNA MER2_type 1 194 -2524 628 168 0 0 chr4 104378574 104378693 -97949654 + Tigger2 DNA MER2_type 2555 2673 -45 * 1946 124 15 0 chr4 104378695 104378968 -97949379 + AluSx SINE Alu 16 292 -20 418 189 0 14 chr4 104378997 104379071 -97949276 + Tigger2 DNA MER2_type 2635 2707 -11 665 60 0 0 chr4 104379239 104379322 -97949025 + AluSc SINE Alu 1 83 -226 1216 237 115 31 chr4 104379349 104379835 -97948512 + LTR10B LTR ERV1 18 544 -3 1605 108 5 0 chr4 104379853 104380060 -97948287 + AluSc SINE Alu 78 288 -21 279 0 0 0 chr4 104380060 104380091 -97948256 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 605 175 0 0 chr4 104381032 104381129 -97947218 + AluJ/FLAM SINE Alu 4 100 -212 39 22 0 0 chr4 104381129 104381175 -97947172 + AT_rich Low_complexity Low_complexity 1 46 0 192 352 13 19 chr4 104381263 104381422 -97946925 + L2 LINE L2 2352 2509 -805 2027 132 3 0 chr4 104381447 104381734 -97946613 - AluSx SINE Alu -24 288 1 927 226 20 0 chr4 104382087 104382282 -97946065 - MER20 DNA MER1_type -20 199 1 225 319 70 6 chr4 104382648 104382805 -97945542 - L1MC/D LINE L1 -1887 5921 5755 183 42 0 0 chr4 104382831 104382855 -97945492 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 368 330 105 48 chr4 104382920 104382939 -97945408 - L1MC/D LINE L1 -2172 5636 5620 2164 120 3 7 chr4 104382939 104383240 -97945107 + AluSx SINE Alu 4 303 -9 368 330 105 48 chr4 104383240 104383360 -97944987 - L1MC/D LINE L1 -2188 5620 5479 2131 103 11 0 chr4 104383360 104383642 -97944705 - AluSx SINE Alu -27 285 1 368 330 105 48 chr4 104383642 104383710 -97944637 - L1MC/D LINE L1 -2329 5479 5416 1918 161 86 51 chr4 104383712 104384140 -97944207 + MER65A LTR ERV1 3 445 0 718 248 43 65 chr4 104384153 104384524 -97943823 + MER65A-int LTR ERV1 16 378 -4493 2529 177 51 86 chr4 104384670 104385126 -97943221 + MER65A-int LTR ERV1 1689 2160 -2711 3011 99 21 7 chr4 104385126 104385522 -97942825 + MLT2A1 LTR ERVL 3 407 -37 320 62 0 21 chr4 104385522 104385570 -97942777 + (TATG)n Simple_repeat Simple_repeat 2 48 0 3011 99 21 7 chr4 104385570 104385609 -97942738 + MLT2A1 LTR ERVL 407 444 0 2529 177 51 86 chr4 104385609 104385620 -97942727 + MER65A-int LTR ERV1 2160 2170 -2701 2234 106 14 0 chr4 104385620 104385912 -97942435 - AluSp SINE Alu -17 296 1 1578 191 69 0 chr4 104385915 104386192 -97942155 - AluJb SINE Alu -16 296 1 2529 177 51 86 chr4 104386192 104386565 -97941782 + MER65A-int LTR ERV1 2172 2494 -2377 2273 88 20 0 chr4 104386603 104386898 -97941449 - AluSq SINE Alu -12 301 1 893 166 49 6 chr4 104386898 104387061 -97941286 - AluJb SINE Alu -14 298 129 1711 144 9 81 chr4 104387064 104387397 -97940950 - AluSp SINE Alu -4 309 1 1043 205 19 121 chr4 104387485 104388099 -97940248 + MER65A-int LTR ERV1 1552 4359 -521 269 108 0 0 chr4 104388099 104388136 -97940211 - U2 snRNA snRNA -151 37 1 230 281 0 0 chr4 104388162 104388251 -97940096 + (TA)n Simple_repeat Simple_repeat 2 90 0 253 244 70 12 chr4 104388255 104388341 -97940006 + MER65A-int LTR ERV1 4094 4184 -3936 863 150 17 100 chr4 104388604 104388844 -97939503 + MER65A-int LTR ERV1 3513 3732 -2866 4842 213 66 82 chr4 104388925 104389830 -97938517 + MER65A-int LTR ERV1 2471 3389 -1482 712 191 0 23 chr4 104389830 104389961 -97938386 + FLAM_C SINE Alu 5 132 -1 4842 213 66 82 chr4 104389961 104390396 -97937951 + MER65A-int LTR ERV1 3389 3830 -1041 2186 90 3 10 chr4 104390396 104390722 -97937625 + AluSq SINE Alu 1 324 0 4842 213 66 82 chr4 104390722 104390831 -97937516 + MER65A-int LTR ERV1 3830 3939 -932 2330 96 0 0 chr4 104390831 104391124 -97937223 + AluSg SINE Alu 1 293 -17 4842 213 66 82 chr4 104391124 104391210 -97937137 + MER65A-int LTR ERV1 3939 4025 -846 1873 173 7 0 chr4 104391210 104391517 -97936830 + AluJb SINE Alu 3 311 -1 4842 213 66 82 chr4 104391517 104391907 -97936440 + MER65A-int LTR ERV1 4025 4420 -451 2300 77 42 0 chr4 104391907 104392194 -97936153 + AluSc SINE Alu 1 299 -10 4842 213 66 82 chr4 104392194 104392597 -97935750 + MER65A-int LTR ERV1 4420 4828 -43 240 35 0 0 chr4 104392597 104392626 -97935721 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 4842 213 66 82 chr4 104392626 104392821 -97935526 + MER65A-int LTR ERV1 4828 4391 -480 2245 116 0 0 chr4 104392821 104393131 -97935216 + AluSx SINE Alu 1 310 -2 4842 213 66 82 chr4 104393131 104393554 -97934793 + MER65A-int LTR ERV1 4390 4818 -53 760 250 0 0 chr4 104393556 104393712 -97934635 + FAM SINE Alu 1 156 -19 2317 119 0 0 chr4 104393716 104394018 -97934329 - AluSx SINE Alu -10 302 1 1918 153 62 13 chr4 104394125 104394510 -97933837 + MER65A LTR ERV1 1 404 -41 25 31 0 0 chr4 104394518 104394550 -97933797 + AT_rich Low_complexity Low_complexity 1 32 0 192 131 33 16 chr4 104394550 104394611 -97933736 + (TA)n Simple_repeat Simple_repeat 1 62 0 1546 192 3 42 chr4 104394623 104394931 -97933416 - AluJo SINE Alu -16 296 1 22 0 0 0 chr4 104394932 104394954 -97933393 + AT_rich Low_complexity Low_complexity 1 22 0 2364 105 0 19 chr4 104395487 104395801 -97932546 - AluSc SINE Alu -1 308 1 382 239 239 0 chr4 104395803 104395937 -97932410 + MIR SINE MIR 89 254 -8 301 165 82 62 chr4 104396152 104396249 -97932098 - L1MC5 LINE L1 -20 7941 7843 834 141 0 56 chr4 104396261 104396403 -97931944 - AluJo SINE Alu -178 134 1 428 192 0 0 chr4 104396458 104396531 -97931816 + FLAM SINE Alu 54 126 -17 273 382 66 35 chr4 104396736 104396995 -97931352 + L2 LINE L2 2554 2820 -494 765 282 101 45 chr4 104397230 104397694 -97930653 - LTR33 LTR ERVL -8 513 24 1833 135 3 28 chr4 104397756 104398091 -97930256 - AluY SINE Alu 0 328 1 217 337 56 0 chr4 104398154 104398243 -97930104 + L2 LINE L2 2998 3091 -181 238 188 21 0 chr4 104398522 104398570 -97929777 + GA-rich Low_complexity Low_complexity 3 51 0 195 42 0 0 chr4 104398609 104398633 -97929714 + (GGA)n Simple_repeat Simple_repeat 2 25 0 2472 81 0 0 chr4 104398672 104398970 -97929377 + AluSc SINE Alu 1 298 -11 24 32 0 0 chr4 104399215 104399246 -97929101 + AT_rich Low_complexity Low_complexity 1 31 0 1994 138 0 29 chr4 104399455 104399766 -97928581 + AluSx SINE Alu 1 302 -10 2855 12 0 6 chr4 104399961 104400281 -97928066 - AluYb8 SINE Alu 0 318 1 362 269 32 0 chr4 104400430 104400523 -97927824 - MIR3 SINE MIR -6 202 107 1906 108 80 10 chr4 104400793 104401081 -97927266 + AluSg SINE Alu 1 308 -2 320 295 125 20 chr4 104401178 104401321 -97927026 + L1ME4a LINE L1 5769 5896 -225 2223 80 45 0 chr4 104401321 104401609 -97926738 - AluSp SINE Alu -12 301 1 320 295 125 20 chr4 104401609 104401771 -97926576 + L1ME4a LINE L1 5896 6117 -4 2284 113 0 7 chr4 104402575 104402885 -97925462 + AluSx SINE Alu 1 308 -4 348 298 84 26 chr4 104402939 104403130 -97925217 + L1M4 LINE L1 3860 4061 -2085 2361 100 0 3 chr4 104403165 104403475 -97924872 - AluY SINE Alu -2 309 1 239 200 36 0 chr4 104403558 104403613 -97924734 - Charlie8 DNA MER1_type -10 2407 2351 1834 150 29 64 chr4 104403637 104404011 -97924336 + MLT1A1 LTR MaLR 1 361 -4 978 149 35 29 chr4 104404423 104404440 -97923907 + AluSg/x SINE Alu 121 136 -176 2085 128 7 0 chr4 104404440 104404737 -97923610 + AluSq SINE Alu 13 311 -2 978 149 35 29 chr4 104404737 104404893 -97923454 + AluSg/x SINE Alu 136 295 -17 235 264 46 46 chr4 104405196 104405272 -97923075 - MIR SINE MIR -30 232 153 2029 128 3 3 chr4 104405272 104405582 -97922765 - AluSx SINE Alu 0 310 1 2260 154 47 20 chr4 104406829 104407022 -97921325 + MSTB1 LTR MaLR 1 187 -245 2510 83 0 0 chr4 104407022 104407324 -97921023 + AluSx SINE Alu 2 303 -9 2260 154 47 20 chr4 104407324 104407539 -97920808 + MSTB1 LTR MaLR 187 420 -12 1879 149 44 7 chr4 104407541 104407836 -97920511 + AluJo SINE Alu 1 306 -6 819 188 0 0 chr4 104409010 104409143 -97919204 - FLAM_C SINE Alu -10 133 1 286 157 20 0 chr4 104409167 104409218 -97919129 - U7 snRNA snRNA -10 53 2 22 0 0 0 chr4 104409307 104409329 -97919018 + AT_rich Low_complexity Low_complexity 1 22 0 2094 117 10 0 chr4 104410653 104410943 -97917404 - AluSx SINE Alu -19 293 1 624 217 179 38 chr4 104411010 104411222 -97917125 - MIR SINE MIR 0 262 21 2093 104 101 9 chr4 104411741 104412078 -97916269 + L1MA3 LINE L1 5927 6294 -11 24 0 0 0 chr4 104412079 104412103 -97916244 + AT_rich Low_complexity Low_complexity 1 24 0 588 121 0 0 chr4 104413914 104414005 -97914342 - L1MA5 LINE L1 -2 6298 6208 1746 154 18 3 chr4 104414026 104414312 -97914035 - AluJb SINE Alu -22 290 1 2200 108 7 0 chr4 104414472 104414769 -97913578 - AluSx SINE Alu -13 299 1 24 0 0 0 chr4 104414811 104414835 -97913512 + AT_rich Low_complexity Low_complexity 1 24 0 637 232 0 16 chr4 104414835 104414960 -97913387 - FLAM_A SINE Alu -10 123 1 314 306 60 48 chr4 104414982 104415250 -97913097 - L1ME4a LINE L1 -222 5899 5629 240 395 22 0 chr4 104415371 104415505 -97912842 + HAL1 LINE L1 1 137 -2370 5112 159 40 15 chr4 104415862 104416798 -97911549 - L1MA7 LINE L1 -10 6281 5323 800 196 55 12 chr4 104416803 104416949 -97911398 - AluJo SINE Alu -22 290 135 2610 56 0 0 chr4 104416949 104417255 -97911092 - AluY SINE Alu -5 306 1 800 196 55 12 chr4 104417255 104417271 -97911076 - AluJo SINE Alu -177 135 121 3957 164 31 35 chr4 104417272 104418136 -97910211 - L1MA7 LINE L1 -837 5309 4456 543 201 18 37 chr4 104418133 104418297 -97910050 + L1M4 LINE L1 5146 5306 -840 * 273 209 139 0 chr4 104418289 104418375 -97909972 + L1MB3 LINE L1 6085 6182 -1 * 195 42 0 0 chr4 104418474 104418498 -97909849 + (A)n Simple_repeat Simple_repeat 1 24 0 230 179 179 0 chr4 104418533 104418600 -97909747 + MIR SINE MIR 184 262 0 2118 129 0 0 chr4 104418649 104418951 -97909396 - AluSx SINE Alu -10 302 1 1746 168 0 4 chr4 104419466 104419746 -97908601 + AluJo SINE Alu 1 279 -33 2136 130 0 9 chr4 104419797 104420112 -97908235 - AluSx SINE Alu 0 312 1 437 265 21 18 chr4 104420142 104420325 -97908022 + L1MEc LINE L1 1315 1477 -4907 1914 174 73 16 chr4 104420548 104420933 -97907414 - L1MB7 LINE L1 -19 6165 5759 957 141 25 12 chr4 104420933 104421096 -97907251 + L1PA15 LINE L1 6001 6165 0 2248 161 19 22 chr4 104421154 104421366 -97906981 - MLT1A1 LTR MaLR 0 365 153 1725 120 4 0 chr4 104421366 104421599 -97906748 - AluSg SINE Alu -13 297 64 2248 161 19 22 chr4 104421599 104421752 -97906595 - MLT1A1 LTR MaLR -212 153 1 300 217 29 0 chr4 104421775 104421844 -97906503 - L1MB7 LINE L1 -1302 4844 4774 391 228 118 52 chr4 104421879 104422015 -97906332 + L2 LINE L2 3165 3309 -4 22 35 0 0 chr4 104422032 104422061 -97906286 + AT_rich Low_complexity Low_complexity 1 29 0 897 163 0 15 chr4 104422311 104422446 -97905901 + FLAM_C SINE Alu 1 133 0 23 68 0 0 chr4 104422634 104422678 -97905669 + AT_rich Low_complexity Low_complexity 1 44 0 2152 106 0 0 chr4 104422738 104423106 -97905241 - AluSx SINE Alu 0 368 1 1771 186 0 16 chr4 104423275 104423592 -97904755 + AluJb SINE Alu 1 312 0 1224 161 21 57 chr4 104423677 104423956 -97904391 + AluSx SINE Alu 44 312 0 267 154 19 0 chr4 104424816 104424868 -97903479 - L1MC4 LINE L1 -6 8036 7984 884 234 58 69 chr4 104424870 104425161 -97903186 - L1MC4 LINE L1 -143 7899 7612 1439 198 14 75 chr4 104425176 104425524 -97902823 - MLT1A1 LTR MaLR -38 327 1 1714 194 55 11 chr4 104425532 104425914 -97902433 - L1MC4 LINE L1 -437 7605 7207 440 206 40 103 chr4 104425930 104426105 -97902242 - L1MC4 LINE L1 -967 7075 6912 3269 91 7 15 chr4 104426132 104426595 -97901752 - MER11C LTR ERVK -23 1048 590 909 169 0 0 chr4 104426609 104426757 -97901590 - AluJb SINE Alu -2 310 163 426 169 0 0 chr4 104426759 104426818 -97901529 - AluS SINE Alu -257 61 3 395 279 73 18 chr4 104427466 104427685 -97900662 + L1ME3A LINE L1 4683 4913 -1233 1822 167 0 10 chr4 104428302 104428607 -97899740 - AluJo SINE Alu -10 302 1 353 280 13 89 chr4 104428787 104428819 -97899528 - L2 LINE L2 0 3313 3280 1058 288 124 7 chr4 104428819 104429222 -97899125 + MLT1J2 LTR MaLR 1 450 0 353 280 13 89 chr4 104429222 104429346 -97899001 - L2 LINE L2 -33 3280 3169 2069 115 0 20 chr4 104429414 104429718 -97898629 - AluSx SINE Alu -14 298 1 247 289 125 19 chr4 104429734 104429838 -97898509 - MIR SINE MIR -66 142 28 315 286 31 64 chr4 104429929 104430185 -97898162 + L1ME3A LINE L1 5673 5920 -250 392 305 110 24 chr4 104430347 104430698 -97897649 + LTR33 LTR ERVL 5 417 -104 642 187 130 0 chr4 104430702 104430825 -97897522 - AluJo SINE Alu -44 268 130 29 28 0 0 chr4 104430834 104430870 -97897477 + AT_rich Low_complexity Low_complexity 1 36 0 1910 88 84 0 chr4 104430872 104431134 -97897213 - AluSg SINE Alu -26 284 1 773 127 0 9 chr4 104431134 104431244 -97897103 - AluJo SINE Alu -182 130 22 1204 208 79 14 chr4 104431337 104431616 -97896731 + AluJo SINE Alu 5 301 -11 1645 175 0 57 chr4 104431789 104431975 -97896372 - AluJo SINE Alu -15 297 135 2391 72 10 0 chr4 104431975 104432268 -97896079 + AluSp SINE Alu 1 296 -17 1645 175 0 57 chr4 104432268 104432396 -97895951 - AluJo SINE Alu -177 135 1 348 306 25 33 chr4 104432396 104432517 -97895830 - L2 LINE L2 -15 3257 3138 524 241 142 60 chr4 104432529 104432724 -97895623 + MIR SINE MIR 2 220 -42 1952 175 17 26 chr4 104432724 104433073 -97895274 - MER7A DNA MER2_type -1 345 2 524 241 142 60 chr4 104433073 104433109 -97895238 + MIR SINE MIR 220 252 -10 344 337 31 25 chr4 104433157 104433353 -97894994 - L2 LINE L2 -179 3093 2897 21 36 0 0 chr4 104433485 104433513 -97894834 + AT_rich Low_complexity Low_complexity 1 28 0 1896 211 42 35 chr4 104433553 104434179 -97894168 - L1MC4 LINE L1 -1 7807 7180 797 100 0 33 chr4 104434282 104434402 -97893945 + FLAM_C SINE Alu 14 129 -14 216 0 0 0 chr4 104434402 104434426 -97893921 + (TA)n Simple_repeat Simple_repeat 2 25 0 605 250 60 5 chr4 104434427 104434627 -97893720 + L1ME4a LINE L1 5649 5859 -262 1345 166 4 13 chr4 104434629 104434858 -97893489 + AluJb SINE Alu 7 233 -79 6006 121 24 21 chr4 104434861 104436419 -97891928 - pTR5 LTR ERV1 0 2438 733 360 167 33 0 chr4 104436420 104436480 -97891867 + AluJb SINE Alu 230 291 -11 24 0 0 0 chr4 104436559 104436583 -97891764 + AT_rich Low_complexity Low_complexity 1 24 0 1460 156 3 101 chr4 104436703 104437029 -97891318 - AluJb SINE Alu -18 294 1 25 51 0 0 chr4 104437865 104437904 -97890443 + GC_rich Low_complexity Low_complexity 1 39 0 243 0 0 0 chr4 104437919 104437946 -97890401 + (CGGGGG)n Simple_repeat Simple_repeat 3 29 0 24 32 0 0 chr4 104438437 104438468 -97889879 + GC_rich Low_complexity Low_complexity 1 31 0 262 263 44 70 chr4 104439263 104439377 -97888970 + MIR SINE MIR 63 173 -89 230 196 0 103 chr4 104439482 104439589 -97888758 + A-rich Low_complexity Low_complexity 4 99 0 2310 115 0 0 chr4 104440605 104440917 -97887430 + AluSx SINE Alu 1 312 0 2328 82 14 0 chr4 104441178 104441471 -97886876 - AluSp SINE Alu -16 297 1 256 337 11 22 chr4 104441516 104441605 -97886742 + L2 LINE L2 3185 3272 0 * 642 246 129 9 chr4 104441593 104441817 -97886530 + MIR SINE MIR 12 262 0 2294 91 0 7 chr4 104441873 104442170 -97886177 - AluSg SINE Alu -10 300 6 254 293 121 17 chr4 104442298 104442414 -97885933 + L2 LINE L2 3161 3288 -25 24 0 0 0 chr4 104443020 104443044 -97885303 + AT_rich Low_complexity Low_complexity 1 24 0 1546 195 23 10 chr4 104443054 104443362 -97884985 - AluJb SINE Alu 0 312 1 1745 130 43 14 chr4 104445155 104445456 -97882891 + AluSx SINE Alu 1 309 0 2731 144 90 53 chr4 104446054 104446804 -97881543 - MER21A LTR ERV1 0 931 32 438 20 0 0 chr4 104446809 104446860 -97881487 + (CA)n Simple_repeat Simple_repeat 2 52 0 1063 245 42 32 chr4 104447084 104447464 -97880883 - L1ME3A LINE L1 -230 5940 5557 2862 123 22 9 chr4 104447467 104448368 -97879979 + L1PB3 LINE L1 5128 6099 -55 249 229 14 0 chr4 104448392 104448462 -97879885 - L1ME3A LINE L1 -641 5529 5459 1294 250 82 112 chr4 104448684 104449309 -97879038 - L1MC4 LINE L1 0 8042 7400 1879 136 20 10 chr4 104449309 104449603 -97878744 - AluJo SINE Alu -15 297 1 1294 250 82 112 chr4 104449603 104450330 -97878017 - L1MC4 LINE L1 -642 7400 6730 546 281 113 25 chr4 104450900 104451138 -97877209 + MIR SINE MIR 4 262 0 5689 196 46 26 chr4 104451232 104452518 -97875829 - L1MB2 LINE L1 -9 6162 4903 1916 165 0 7 chr4 104452518 104452815 -97875532 + AluJo SINE Alu 1 295 -17 5689 196 46 26 chr4 104452815 104454003 -97874344 - L1MB2 LINE L1 -1268 4903 3630 2258 88 3 0 chr4 104454007 104454320 -97874027 + AluSp SINE Alu 1 314 0 327 253 0 21 chr4 104454415 104454510 -97873837 - AluSq/x SINE Alu -169 133 41 342 246 73 27 chr4 104454518 104454618 -97873729 - L1MB2 LINE L1 -2992 3154 3060 2208 112 0 13 chr4 104454618 104454922 -97873425 - AluSx SINE Alu -12 300 1 342 246 73 27 chr4 104454922 104455024 -97873323 - L1MB2 LINE L1 -3086 3060 2942 1983 169 11 3 chr4 104455026 104455381 -97872966 - MER4D LTR ERV1 -27 876 519 287 158 73 0 chr4 104455429 104455511 -97872836 - L1MB2 LINE L1 -3227 2919 2832 1018 196 82 44 chr4 104455799 104456115 -97872232 - LTR10C LTR ERV1 -27 564 255 16665 286 42 38 chr4 104456319 104463406 -97864941 - HERVI LTR ERV1 -56 7729 613 396 275 80 40 chr4 104463606 104463857 -97864490 - HERVI LTR ERV1 -7524 261 1 1081 210 37 36 chr4 104463872 104464196 -97864151 - LTR10C LTR ERV1 -21 570 255 263 330 71 10 chr4 104465510 104465707 -97862640 - L1ME LINE L1 -297 5824 5616 936 120 25 25 chr4 104466141 104466299 -97862048 - LTR8 LTR ERV1 0 691 534 1816 194 68 25 chr4 104466320 104466758 -97861589 + LTR2B LTR ERV1 34 490 0 2926 110 10 103 chr4 104466760 104467173 -97861174 - LTR8 LTR ERV1 -156 535 192 1916 129 3 80 chr4 104467173 104467537 -97860810 - MER1B DNA MER1_type -1 336 1 2926 110 10 103 chr4 104467537 104467713 -97860634 - LTR8 LTR ERV1 -499 192 1 310 280 19 47 chr4 104467821 104467928 -97860419 - MER5B DNA MER1_type -72 106 3 3363 104 65 55 chr4 104467945 104468549 -97859798 + MER4B LTR ERV1 1 610 0 1239 190 138 16 chr4 104469498 104469882 -97858465 - LTR48B LTR ERV1 -8 636 206 358 143 0 153 chr4 104469902 104470000 -97858347 - MLT1D LTR MaLR -420 85 3 354 278 35 17 chr4 104470659 104470774 -97857573 - L2 LINE L2 -6 3266 3150 705 242 47 0 chr4 104473158 104473373 -97854974 - L1M4 LINE L1 -2411 3735 3511 207 0 0 0 chr4 104473448 104473471 -97854876 + (T)n Simple_repeat Simple_repeat 1 23 0 304 232 37 12 chr4 104473942 104474024 -97854323 + MIR SINE MIR 164 247 -15 1718 160 7 18 chr4 104474558 104474874 -97853473 - AluJb SINE Alu 0 316 4 298 326 0 0 chr4 104475461 104475547 -97852800 + MIR3 SINE MIR 118 203 -5 413 140 0 112 chr4 104476970 104477075 -97851272 + MER2 DNA MER2_type 1 92 -147 283 225 117 0 chr4 104477314 104477434 -97850913 - L1ME4a LINE L1 -4 6117 5984 182 191 21 0 chr4 104478206 104478253 -97850094 + (ATG)n Simple_repeat Simple_repeat 1 48 0 644 228 17 33 chr4 104478260 104478440 -97849907 - MIR SINE MIR 0 262 86 228 304 0 0 chr4 104478477 104478556 -97849791 - MER116 DNA Mariner 0 80 2 1425 281 76 40 chr4 104478921 104480693 -97847654 - L1MC4a LINE L1 -747 5399 4086 257 273 62 25 chr4 104480778 104480939 -97847408 - L1MC4a LINE L1 -2255 3891 3725 186 268 0 0 chr4 104481439 104481480 -97846867 + MIR SINE MIR 216 256 -6 2403 85 0 10 chr4 104481932 104482238 -97846109 - AluSg SINE Alu -7 303 1 1044 76 0 0 chr4 104482240 104482371 -97845976 - AluSq/x SINE Alu -180 133 3 1151 147 8 109 chr4 104482821 104483059 -97845288 - AluJo SINE Alu -17 295 82 45 62 0 0 chr4 104483202 104483282 -97845065 + AT_rich Low_complexity Low_complexity 1 80 0 292 280 32 8 chr4 104484098 104484223 -97844124 + L1ME LINE L1 5486 5613 -508 806 248 62 33 chr4 104484299 104484541 -97843806 - MIR SINE MIR -3 259 11 1274 150 40 4 chr4 104485124 104485351 -97842996 - MER46A DNA MER2_type -1 235 1 1748 157 30 7 chr4 104486268 104486573 -97841774 - AluJb SINE Alu 0 312 1 324 218 127 68 chr4 104488074 104488362 -97839985 - L1MB7 LINE L1 -105 6016 5708 2055 120 62 0 chr4 104488477 104488769 -97839578 + AluSx SINE Alu 1 310 -2 291 93 0 0 chr4 104489275 104489318 -97839029 + (A)n Simple_repeat Simple_repeat 1 43 0 598 220 23 45 chr4 104489530 104489707 -97838640 - MER20 DNA MER1_type -1 218 46 211 212 329 24 chr4 104490577 104490662 -97837685 + MIR SINE MIR 35 145 -117 1788 174 23 7 chr4 104490715 104491014 -97837333 - AluJb SINE Alu -6 306 3 677 269 89 49 chr4 104491330 104491735 -97836612 - MLT1J1 LTR MaLR -25 421 1 477 224 46 66 chr4 104492063 104492215 -97836132 + MIR SINE MIR 104 252 -10 387 234 86 61 chr4 104492228 104492425 -97835922 - MIR SINE MIR -59 203 2 231 378 61 13 chr4 104492617 104492847 -97835500 - L2 LINE L2 -523 2791 2551 2155 117 3 64 chr4 104492888 104493247 -97835100 + MER1B DNA MER1_type 1 337 0 1763 176 3 3 chr4 104493748 104494037 -97834310 - AluJb SINE Alu -23 289 1 13351 122 35 44 chr4 104494348 104494655 -97833692 - Tigger1 DNA MER2_type 0 2418 2110 2162 132 81 34 chr4 104494655 104495064 -97833283 - MSTA LTR MaLR 0 428 1 13351 122 35 44 chr4 104495064 104495580 -97832767 - Tigger1 DNA MER2_type -308 2110 1591 1839 154 0 25 chr4 104495580 104495899 -97832448 - AluJb SINE Alu -1 311 1 13351 122 35 44 chr4 104495899 104497455 -97830892 - Tigger1 DNA MER2_type -827 1591 57 2103 145 3 3 chr4 104497455 104497766 -97830581 + AluSx SINE Alu 1 311 -1 13351 122 35 44 chr4 104497766 104497823 -97830524 - Tigger1 DNA MER2_type -2361 57 1 445 247 100 0 chr4 104497958 104498108 -97830239 - MER33 DNA MER1_type -155 169 5 2319 57 7 0 chr4 104498875 104499214 -97829133 - AluY SINE Alu 0 341 1 1990 111 14 27 chr4 104499217 104499514 -97828833 - AluSx SINE Alu -19 293 1 338 267 91 57 chr4 104500542 104500718 -97827629 - MIR SINE MIR -59 203 22 418 206 85 18 chr4 104501004 104501157 -97827190 - MLT1E LTR MaLR -399 168 7 1450 167 6 40 chr4 104502471 104502705 -97825642 - L1MB3 LINE L1 -50 6133 5911 2459 76 0 0 chr4 104502705 104503007 -97825340 - AluY SINE Alu -9 302 1 1450 167 6 40 chr4 104503007 104503096 -97825251 - L1MB3 LINE L1 -272 5911 5821 348 96 0 0 chr4 104503125 104503177 -97825170 - L1MA5A LINE L1 -21 6276 6225 1050 158 32 0 chr4 104505646 104505804 -97822543 + FRAM SINE Alu 4 166 0 22 0 0 0 chr4 104506166 104506188 -97822159 + AT_rich Low_complexity Low_complexity 1 22 0 551 230 184 4 chr4 104506195 104506456 -97821891 - L1MC4 LINE L1 0 8042 7735 638 222 151 68 chr4 104506497 104506539 -97821808 - L1MC4 LINE L1 -381 7661 7624 2045 98 21 7 chr4 104506539 104506826 -97821521 - AluSq SINE Alu -22 291 1 638 222 151 68 chr4 104506826 104506845 -97821502 - L1MC4 LINE L1 -418 7624 7608 1211 113 73 0 chr4 104506845 104507022 -97821325 - MER30B DNA MER1_type 0 190 1 638 222 151 68 chr4 104507022 104507311 -97821036 - L1MC4 LINE L1 -434 7608 7281 7110 37 11 0 chr4 104507729 104508565 -97819782 - L1PA5 LINE L1 0 6154 5310 180 0 0 0 chr4 104509069 104509089 -97819258 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1454 182 28 0 chr4 104509090 104509343 -97819004 - AluJb SINE Alu -52 260 1 969 153 49 6 chr4 104510817 104511000 -97817347 + L1MA4 LINE L1 6106 6296 -4 1938 94 80 11 chr4 104511089 104511364 -97816983 - AluSx SINE Alu -17 295 2 2322 83 14 0 chr4 104511449 104511739 -97816608 + AluSx SINE Alu 1 294 -18 697 141 0 0 chr4 104511806 104511905 -97816442 - AluJb SINE Alu -16 296 198 1479 183 30 40 chr4 104512078 104512379 -97815968 - AluJb SINE Alu -14 298 1 399 222 120 17 chr4 104513322 104513589 -97814758 + L1M3 LINE L1 5159 5458 -722 343 244 219 29 chr4 104513601 104513871 -97814476 + L1ME3 LINE L1 5551 5886 -284 213 315 79 11 chr4 104514163 104514252 -97814095 - L2 LINE L2 -9 3263 3169 2383 89 0 0 chr4 104515508 104515810 -97812537 - AluY SINE Alu -9 302 1 23 0 0 0 chr4 104516533 104516556 -97811791 + AT_rich Low_complexity Low_complexity 1 23 0 1817 134 55 3 chr4 104517548 104517840 -97810507 - AluSx SINE Alu -5 307 1 22 35 0 0 chr4 104517870 104517899 -97810448 + AT_rich Low_complexity Low_complexity 1 29 0 384 245 168 21 chr4 104518022 104518040 -97810307 - MIR SINE MIR -98 164 150 1240 126 122 19 chr4 104518040 104518254 -97810093 - MER46A DNA MER2_type 0 236 1 384 245 168 21 chr4 104518254 104518378 -97809969 - MIR SINE MIR -112 150 1 1467 179 109 7 chr4 104519574 104519848 -97808499 + AluJo SINE Alu 1 302 -10 461 313 132 9 chr4 104520161 104520388 -97807959 + MIR SINE MIR 5 259 -3 589 62 394 119 chr4 104520414 104520574 -97807773 - AluJo SINE Alu -23 289 86 1619 174 14 3 chr4 104520747 104521035 -97807312 - AluJb SINE Alu -21 291 1 1936 227 111 35 chr4 104521377 104521980 -97806367 + L1ME3 LINE L1 5514 6162 0 210 200 187 40 chr4 104523022 104523097 -97805250 + MIR SINE MIR 106 191 -71 3303 113 19 2 chr4 104523170 104523649 -97804698 + LTR15 LTR ERV1 1 487 -6 617 151 65 29 chr4 104524530 104524669 -97803678 + MER104 DNA Tc2 1 144 -36 2152 110 0 7 chr4 104525010 104525301 -97803046 - AluSg SINE Alu -21 289 1 2376 104 0 0 chr4 104525643 104525951 -97802396 + AluSx SINE Alu 1 308 -4 4162 148 11 13 chr4 104526449 104527085 -97801262 + MER41B LTR ERV1 1 635 0 344 252 0 48 chr4 104527840 104527943 -97800404 - MER5A DNA MER1_type -75 114 17 771 191 105 59 chr4 104528015 104528080 -97800267 + MER33 DNA MER1_type 1 62 -2523 2075 106 3 7 chr4 104528080 104528397 -97799950 + AluSg SINE Alu 1 316 0 771 191 105 59 chr4 104528397 104528634 -97799713 + MER33 DNA MER1_type 62 318 -6 191 275 46 92 chr4 104528936 104529004 -97799343 + MIR SINE MIR 138 199 -63 2462 53 13 0 chr4 104529004 104529307 -97799040 + AluY SINE Alu 1 307 -4 191 275 46 92 chr4 104529307 104529369 -97798978 + MIR SINE MIR 199 262 0 2189 78 7 3 chr4 104529441 104529725 -97798622 + AluSq SINE Alu 1 285 -28 248 183 263 51 chr4 104530352 104530489 -97797858 + MIR SINE MIR 35 200 -62 206 282 12 71 chr4 104530609 104530694 -97797653 + MIR SINE MIR 33 112 -96 1998 100 3 61 chr4 104531781 104532092 -97796255 - AluSx SINE Alu -19 293 1 733 305 110 79 chr4 104532239 104532783 -97795564 + L2 LINE L2 2171 2748 -566 207 0 0 0 chr4 104532783 104532806 -97795541 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 733 305 110 79 chr4 104532806 104533035 -97795312 + L2 LINE L2 2748 2968 -346 4789 196 43 6 chr4 104533150 104534062 -97794285 + L1MCa LINE L1 1 946 -5480 3360 53 25 1 chr4 104534062 104534574 -97793773 - LTR10C LTR ERV1 0 591 1 2035 155 115 0 chr4 104534575 104534976 -97793371 + L1MCa LINE L1 944 1390 -5036 4428 239 33 11 chr4 104534981 104536109 -97792238 + L1M4 LINE L1 3502 4654 -1492 726 172 93 0 chr4 104536125 104536276 -97792071 - LTR43 LTR ERV1 -83 519 355 42564 55 13 0 chr4 104536277 104542347 -97786000 - L1PA5 LINE L1 -4 6150 1 269 143 0 0 chr4 104543551 104543593 -97784754 - MSTB2 LTR MaLR 0 457 416 * 348 175 0 0 chr4 104543586 104543643 -97784704 - MSTC LTR MaLR -251 145 89 1060 135 12 0 chr4 104543643 104543806 -97784541 - FRAM SINE Alu -12 164 1 405 217 54 0 chr4 104543807 104543899 -97784448 - MSTC LTR MaLR -331 97 1 345 329 83 48 chr4 104544859 104545148 -97783199 + LTR67 LTR ERVL 238 536 -21 267 355 8 16 chr4 104545668 104545789 -97782558 + HERVL LTR ERVL 561 680 -5084 258 317 33 71 chr4 104546055 104546421 -97781926 + HERVL LTR ERVL 997 1348 -4306 180 0 0 0 chr4 104546723 104546743 -97781604 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2301 78 0 60 chr4 104546744 104547091 -97781256 - LTR17 LTR ERV1 -454 326 1 2307 68 3 3 chr4 104547091 104547383 -97780964 - HERV17 LTR ERV1 0 8626 8335 322 26 0 0 chr4 104547373 104547412 -97780935 - HERV17 LTR ERV1 -1078 7548 7510 * 5214 33 2 0 chr4 104547405 104548017 -97780330 - HERV17 LTR ERV1 -2607 6019 5407 * 10724 62 7 5 chr4 104547998 104549321 -97779026 - HERV17 LTR ERV1 -4872 3754 2430 9797 74 7 16 chr4 104549304 104550579 -97777768 - HERV17 LTR ERV1 -6610 2016 753 * 5115 82 16 26 chr4 104550740 104551433 -97776914 - HERV17 LTR ERV1 -7939 687 2 3756 113 6 4 chr4 104551433 104551953 -97776394 - LTR17 LTR ERV1 0 780 260 1273 243 147 47 chr4 104551961 104552451 -97775896 - MLT1L LTR MaLR -61 554 16 309 299 52 0 chr4 104552463 104552560 -97775787 + HERVL LTR ERVL 3002 3103 -2551 2373 92 3 16 chr4 104552631 104552947 -97775400 - AluSp SINE Alu 0 313 2 590 283 0 14 chr4 104553074 104553219 -97775128 + HERVL LTR ERVL 3371 3513 -2251 216 0 0 0 chr4 104553232 104553256 -97775091 + (TC)n Simple_repeat Simple_repeat 2 25 0 327 192 0 0 chr4 104553259 104553332 -97775015 + (TA)n Simple_repeat Simple_repeat 2 74 0 249 225 100 0 chr4 104553333 104553413 -97774934 + L1MC4 LINE L1 6615 6702 -1340 * 256 207 46 23 chr4 104553379 104553466 -97774881 - L1MC4 LINE L1 -1340 6702 6614 225 250 12 38 chr4 104553421 104553471 -97774876 + L1MCa LINE L1 2006 2055 -4371 * 474 18 0 0 chr4 104553471 104553526 -97774821 + (CA)n Simple_repeat Simple_repeat 2 56 0 225 250 12 38 chr4 104553526 104553555 -97774792 + L1MCa LINE L1 2055 2083 -4343 1624 295 66 24 chr4 104553626 104554385 -97773962 + HERVL LTR ERVL 3595 4434 -1220 2301 75 0 0 chr4 104555151 104555456 -97772891 - AluY SINE Alu 0 305 1 23 33 0 0 chr4 104555506 104555536 -97772811 + AT_rich Low_complexity Low_complexity 1 30 0 247 266 124 18 chr4 104555536 104555649 -97772698 + L3 LINE CR1 871 995 -582 276 294 151 35 chr4 104555663 104555968 -97772379 + L3 LINE CR1 1129 1527 -50 270 241 78 0 chr4 104555993 104556109 -97772238 - L1MC4 LINE L1 0 8042 7918 198 0 0 0 chr4 104556109 104556131 -97772216 + (CA)n Simple_repeat Simple_repeat 1 22 0 28723 47 0 3 chr4 104556135 104559874 -97768473 - L1P LINE L1 -2413 3733 5 370 219 38 29 chr4 104559878 104559983 -97768364 - L1MC4 LINE L1 -135 7907 7802 240 100 0 0 chr4 104560312 104560352 -97767995 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 1914 139 13 28 chr4 104561135 104561452 -97766895 + AluSx SINE Alu 1 312 0 1739 174 0 42 chr4 104561574 104561885 -97766462 - AluJo SINE Alu -14 298 1 4715 151 48 11 chr4 104562087 104562884 -97765463 + LTR1B LTR ERV1 1 826 0 3112 61 35 7 chr4 104563710 104564134 -97764213 - L1PA11 LINE L1 -1 6173 5738 5232 93 17 4 chr4 104564406 104565173 -97763174 + L1PA11 LINE L1 5397 6173 -1 281 200 9 26 chr4 104565419 104565534 -97762813 + (TA)n Simple_repeat Simple_repeat 2 114 0 1688 66 33 0 chr4 104565616 104565858 -97762489 - L1MA2 LINE L1 0 6304 6055 1743 85 13 0 chr4 104565861 104566097 -97762250 - L1PA11 LINE L1 -8 6166 5928 448 238 0 48 chr4 104566097 104566286 -97762061 - L1MC5 LINE L1 -48 7913 7734 186 261 65 0 chr4 104568820 104568866 -97759481 + L2 LINE L2 3264 3312 -1 22 70 0 0 chr4 104568938 104568981 -97759366 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 104569089 104569111 -97759236 + AT_rich Low_complexity Low_complexity 1 22 0 2068 121 0 13 chr4 104569601 104569899 -97758448 + AluSx SINE Alu 3 296 -16 2765 166 95 71 chr4 104569899 104570206 -97758141 + LOR1-int LTR ERV1 1037 1335 -4996 2092 121 7 3 chr4 104570206 104570496 -97757851 + AluSx SINE Alu 1 291 -21 2765 166 95 71 chr4 104570496 104570865 -97757482 + LOR1-int LTR ERV1 1335 1694 -4637 1785 181 7 0 chr4 104570865 104571153 -97757194 - AluJo SINE Alu -22 290 1 2765 166 95 71 chr4 104571153 104572333 -97756014 + LOR1-int LTR ERV1 1694 4183 -2148 202 279 0 0 chr4 104572845 104572888 -97755459 - MER5B DNA MER1_type -129 49 7 24 0 0 0 chr4 104572926 104572950 -97755397 + AT_rich Low_complexity Low_complexity 1 24 0 424 156 198 0 chr4 104575729 104575825 -97752522 + L1MA7 LINE L1 5627 5741 -571 2724 149 34 11 chr4 104575968 104576499 -97751848 + L1MA7 LINE L1 5748 6290 -1 23 0 0 0 chr4 104576743 104576766 -97751581 + AT_rich Low_complexity Low_complexity 1 23 0 439 241 117 7 chr4 104577028 104577165 -97751182 - L2 LINE L2 0 3313 3162 1923 163 0 0 chr4 104577208 104577496 -97750851 + AluJo SINE Alu 9 296 -16 277 312 65 0 chr4 104578377 104578454 -97749893 - MIR SINE MIR -148 114 33 2109 88 0 75 chr4 104579007 104579189 -97749158 - AluSp SINE Alu -18 295 146 2294 86 0 0 chr4 104579189 104579479 -97748868 - AluSg SINE Alu -20 290 1 2109 88 0 75 chr4 104579479 104579615 -97748732 - AluSp SINE Alu -167 146 1 303 227 15 0 chr4 104579619 104579685 -97748662 - MIR SINE MIR -6 256 190 745 213 9 56 chr4 104579703 104579919 -97748428 - L1MC5 LINE L1 -48 7913 7708 823 220 42 45 chr4 104579941 104580295 -97748052 - L1MC5 LINE L1 -436 7525 7173 372 271 0 0 chr4 104580298 104580383 -97747964 - MIR SINE MIR -65 197 113 421 266 48 24 chr4 104580480 104580604 -97747743 + MIR SINE MIR 8 134 -128 625 314 35 24 chr4 104580728 104581128 -97747219 - L1ME3A LINE L1 -284 5886 5506 700 264 10 39 chr4 104581699 104581907 -97746440 - MIR SINE MIR -1 261 60 2009 147 7 0 chr4 104582347 104582639 -97745708 + AluSx SINE Alu 3 296 -16 2402 89 3 0 chr4 104582641 104582943 -97745404 + AluSx SINE Alu 3 305 -7 1971 161 6 6 chr4 104582949 104583290 -97745057 - L1PA15 LINE L1 -15 6150 5810 430 221 105 11 chr4 104585267 104585362 -97742985 + MER5A DNA MER1_type 9 112 -77 21 0 0 0 chr4 104585440 104585461 -97742886 + AT_rich Low_complexity Low_complexity 1 21 0 337 310 110 0 chr4 104585878 104586033 -97742314 - L1ME4a LINE L1 -196 5925 5754 22 0 0 0 chr4 104586037 104586059 -97742288 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr4 104586519 104586564 -97741783 + AT_rich Low_complexity Low_complexity 1 45 0 434 256 80 3 chr4 104586756 104587000 -97741347 - L1ME3A LINE L1 -232 5930 5666 517 284 54 5 chr4 104587451 104587655 -97740692 - L1ME3A LINE L1 -567 5603 5390 348 179 81 24 chr4 104587711 104587901 -97740446 + L1MA5 LINE L1 6171 6367 0 25 0 0 0 chr4 104589004 104589029 -97739318 + AT_rich Low_complexity Low_complexity 1 25 0 198 301 24 36 chr4 104589036 104589119 -97739228 + L2 LINE L2 2305 2386 -928 2318 78 0 35 chr4 104589119 104589438 -97738909 - AluY SINE Alu -3 308 1 592 168 63 0 chr4 104589498 104589641 -97738706 + MER104 DNA Tc2 13 164 -16 2227 120 7 0 chr4 104589702 104590002 -97738345 - AluSx SINE Alu -10 302 1 734 183 107 40 chr4 104590079 104590185 -97738162 - L1MB7 LINE L1 -19 6165 6068 2288 112 0 0 chr4 104590185 104590481 -97737866 - AluSx SINE Alu -16 296 1 734 183 107 40 chr4 104590481 104590598 -97737749 - L1MB7 LINE L1 -116 6068 5927 940 117 0 0 chr4 104590661 104590798 -97737549 + MER41D LTR ERV1 1 137 -420 2200 173 23 12 chr4 104592124 104592534 -97735813 + MER41D LTR ERV1 128 542 -12 2826 3 0 0 chr4 104592534 104592839 -97735508 - AluYa5 SINE Alu -6 305 1 1377 135 29 33 chr4 104593253 104593527 -97734820 + MER4D-int LTR ERV1 941 1213 -573 788 137 14 0 chr4 104593522 104593661 -97734686 + MER4D-int LTR ERV1 1506 1646 -6474 * 2296 174 59 67 chr4 104594185 104595420 -97732927 + MER4D-int LTR ERV1 1722 4175 -2156 348 217 39 106 chr4 104595555 104595735 -97732612 + MER4D-int LTR ERV1 3786 3953 -4167 453 196 105 0 chr4 104595815 104595943 -97732404 + MER4D-int LTR ERV1 4167 6134 -624 1036 197 61 67 chr4 104595948 104596278 -97732069 + MER4D-int LTR ERV1 6384 6711 -47 700 205 37 70 chr4 104596319 104596534 -97731813 + MER4D LTR ERV1 10 217 -686 4694 96 36 4 chr4 104596559 104597259 -97731088 - L1PB2 LINE L1 -2 6149 5428 2244 111 0 3 chr4 104597265 104597591 -97730756 - AluSx SINE Alu 0 312 1 534 122 12 0 chr4 104597592 104597674 -97730673 + MER49 LTR ERV1 208 290 -633 * 602 140 28 0 chr4 104597653 104597760 -97730587 + MER49 LTR ERV1 610 719 -204 994 177 23 32 chr4 104597770 104597990 -97730357 + MER41D-int LTR ERV1 4609 4826 -1850 2241 223 12 16 chr4 104598445 104598947 -97729400 + MER41D-int LTR ERV1 6121 6620 -56 303 123 164 0 chr4 104599015 104599088 -97729259 + HERVK14 LTR ERVK 5671 5755 -190 539 78 0 0 chr4 104599089 104599166 -97729181 + MER41D LTR ERV1 1 77 -480 30 59 0 0 chr4 104599372 104599423 -97728924 + AT_rich Low_complexity Low_complexity 1 51 0 563 0 15 0 chr4 104600191 104600258 -97728089 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 267 274 162 17 chr4 104600890 104601007 -97727340 - MIR SINE MIR -6 256 123 209 329 29 14 chr4 104601415 104601485 -97726862 + L2 LINE L2 3008 3078 -194 448 279 30 55 chr4 104602123 104602324 -97726023 + L2 LINE L2 3115 3310 -3 2515 60 3 0 chr4 104602436 104602737 -97725610 + AluY SINE Alu 1 302 -9 352 23 0 0 chr4 104603082 104603126 -97725221 + L1PA6 LINE L1 6105 6148 -6 784 202 66 14 chr4 104603762 104603975 -97724372 - MER5C DNA MER1_type 0 324 101 1857 206 83 7 chr4 104605041 104605477 -97722870 + MLT1F LTR MaLR 72 540 -2 925 213 91 89 chr4 104605587 104605948 -97722399 - MSTD LTR MaLR 0 396 35 626 335 49 41 chr4 104606524 104606615 -97721732 - HERV16 LTR ERVL -2995 2001 1912 1741 182 0 11 chr4 104606615 104606934 -97721413 + AluJo SINE Alu 1 316 0 626 335 49 41 chr4 104606934 104607810 -97720537 - HERV16 LTR ERVL -3084 1912 961 5593 144 8 12 chr4 104608035 104609050 -97719297 - L1MA3 LINE L1 0 6305 5296 450 99 0 0 chr4 104609060 104609131 -97719216 - L1PB3 LINE L1 -2 6209 6139 2864 149 45 4 chr4 104609140 104609649 -97718698 - MER41B LTR ERV1 -88 547 18 6768 99 5 22 chr4 104609673 104610728 -97717619 - MER41B-int LTR ERV1 0 5946 4910 10151 185 16 14 chr4 104610728 104613500 -97714847 - L1PB3 LINE L1 -161 6050 3278 2191 137 13 0 chr4 104613500 104613806 -97714541 - AluSx SINE Alu -2 310 1 10151 185 16 14 chr4 104613806 104614234 -97714113 - L1PB3 LINE L1 -2933 3278 2852 6532 39 1 0 chr4 104614216 104615032 -97713315 - L1PA5 LINE L1 0 6154 5338 * 34163 66 31 1 chr4 104615023 104619823 -97708524 - L1PA5 LINE L1 -764 5382 439 6135 159 44 24 chr4 104619878 104620492 -97707855 - L1PB3 LINE L1 -3357 2846 2245 1906 160 3 0 chr4 104620492 104620779 -97707568 - AluJb SINE Alu -24 288 1 6135 159 44 24 chr4 104620779 104622941 -97705406 - L1PB3 LINE L1 -3958 2245 1 3332 300 36 20 chr4 104622949 104624427 -97703920 - L1PBa LINE L1 -5360 1503 3 1724 196 10 7 chr4 104624439 104624847 -97703500 - L1 LINE L1 -813 5333 4925 1348 227 0 0 chr4 104624848 104625108 -97703239 - AluJb SINE Alu -15 297 38 700 111 7 78 chr4 104625113 104625208 -97703139 - L1PA15 LINE L1 0 6165 6084 266 24 73 0 chr4 104625208 104625249 -97703098 + (TTATA)n Simple_repeat Simple_repeat 5 48 0 700 111 7 78 chr4 104625249 104625306 -97703041 - L1PA15 LINE L1 -81 6084 6024 * 6976 71 8 11 chr4 104625301 104626963 -97701384 - L1PA8 LINE L1 -3 6169 4511 1806 69 0 4 chr4 104626970 104627203 -97701144 - L1PA6 LINE L1 -11 6143 5912 3021 96 9 2 chr4 104627203 104627652 -97700695 - L1PA8 LINE L1 -1623 4523 4072 * 5856 185 21 25 chr4 104627647 104628866 -97699481 - L1PA15 LINE L1 -126 6039 4816 2056 186 61 71 chr4 104628866 104629426 -97698921 + MLT2B3 LTR ERVL 1 554 0 5856 185 21 25 chr4 104629426 104630093 -97698254 - L1PA15 LINE L1 -1349 4816 4027 2405 94 3 0 chr4 104630093 104630392 -97697955 - AluSp SINE Alu -13 300 1 5856 185 21 25 chr4 104630392 104630519 -97697828 - L1PA15 LINE L1 -2138 4027 3901 3544 107 4 6 chr4 104630519 104631031 -97697316 - MER9 LTR ERVK 0 511 1 7181 103 6 9 chr4 104631033 104632464 -97695883 - HERVK9 LTR ERVK -2 8033 4583 2536 65 0 0 chr4 104632465 104632805 -97695542 - HERVK9 LTR ERVK -1976 3940 3601 * 8087 70 0 0 chr4 104632802 104633862 -97694485 - HERVK9 LTR ERVK -3433 2483 1424 3508 103 34 21 chr4 104633860 104634421 -97693926 - HERVK9 LTR ERVK -5348 568 1 * 3693 100 2 4 chr4 104634421 104634933 -97693414 - MER9 LTR ERVK 0 511 1 2888 219 0 4 chr4 104634934 104635616 -97692731 - L1PA15 LINE L1 -2241 3905 3227 14145 75 4 2 chr4 104635637 104637538 -97690809 - HERVL LTR ERVL -1934 3720 1817 1697 101 19 26 chr4 104637538 104637806 -97690541 - AluY SINE Alu -4 307 42 1186 97 113 21 chr4 104637807 104637993 -97690354 - AluSp SINE Alu -106 207 5 539 217 101 8 chr4 104638019 104638148 -97690199 - FRAM SINE Alu -8 168 28 790 162 21 7 chr4 104638149 104638291 -97690056 - MER30 DNA MER1_type 0 230 87 642 158 44 9 chr4 104638299 104638413 -97689934 - FLAM_C SINE Alu -15 118 1 1442 161 110 0 chr4 104638446 104638701 -97689646 - AluJb SINE Alu -9 303 21 1506 228 29 40 chr4 104638702 104639150 -97689197 - L1ME LINE L1 -449 5717 5275 2102 110 0 0 chr4 104639174 104639465 -97688882 - AluSg SINE Alu -19 291 1 1923 171 0 9 chr4 104639486 104639801 -97688546 + AluJb SINE Alu 1 312 0 500 156 13 0 chr4 104639916 104639993 -97688354 - FRAM/FAM SINE Alu -99 77 1 517 214 122 20 chr4 104639997 104640193 -97688154 - L1ME LINE L1 -1742 4404 4189 13347 78 5 0 chr4 104640203 104642004 -97686343 - HERVL-A2 LTR ERVL -3844 1810 1 3280 75 11 39 chr4 104642004 104642070 -97686277 - MLT2A2 LTR ERVL 0 453 387 222 37 0 0 chr4 104642070 104642097 -97686250 + (CA)n Simple_repeat Simple_repeat 2 28 0 3280 75 11 39 chr4 104642097 104642496 -97685851 - MLT2A2 LTR ERVL -66 387 1 2699 211 4 0 chr4 104642496 104643146 -97685201 - L1PA15 LINE L1 -3820 2326 1674 2082 175 86 2 chr4 104643146 104643541 -97684806 - MSTA LTR MaLR 0 428 1 1686 164 0 3 chr4 104643541 104643834 -97684513 - MSTA-int LTR MaLR 0 1651 1360 310 305 19 35 chr4 104643894 104644130 -97684217 - LTR16C LTR ERVL -135 356 73 1129 170 9 49 chr4 104644375 104644599 -97683748 - AluJo SINE Alu -12 300 86 265 245 151 9 chr4 104649552 104649658 -97678689 - MER20 DNA MER1_type 0 219 99 233 361 197 0 chr4 104650989 104651197 -97677150 + MIR SINE MIR 2 250 -12 229 278 0 0 chr4 104651199 104651271 -97677076 + (TAA)n Simple_repeat Simple_repeat 2 73 0 201 39 0 0 chr4 104652679 104652705 -97675642 + (TC)n Simple_repeat Simple_repeat 1 26 0 277 291 345 5 chr4 104652955 104653161 -97675186 + L2 LINE L2 3037 3312 -1 29 0 0 0 chr4 104654533 104654562 -97673785 + AT_rich Low_complexity Low_complexity 1 29 0 293 232 30 10 chr4 104654701 104654800 -97673547 - L1MC4a LINE L1 -1889 5919 5819 2068 212 71 58 chr4 104654906 104655514 -97672833 + MLT1E2 LTR MaLR 11 626 0 496 328 43 23 chr4 104655514 104655746 -97672601 - L1MC4a LINE L1 -2144 5664 5423 1340 156 68 14 chr4 104655746 104656041 -97672306 - L1MA7 LINE L1 0 6291 5981 496 328 43 23 chr4 104656041 104656110 -97672237 - L1MC4a LINE L1 -2385 5423 5357 180 176 0 0 chr4 104656110 104656144 -97672203 + (TA)n Simple_repeat Simple_repeat 2 35 0 272 321 21 16 chr4 104656367 104656559 -97671788 - L1MC4a LINE L1 -1059 5087 4895 1790 185 0 10 chr4 104657500 104657808 -97670539 + AluJo SINE Alu 1 305 -7 332 265 22 0 chr4 104657972 104658073 -97670274 + MIR SINE MIR 39 141 -67 691 201 7 65 chr4 104658794 104658948 -97669399 + MER5B DNA MER1_type 28 172 -6 463 195 11 0 chr4 104658951 104659038 -97669309 - AluJo SINE Alu -224 88 1 329 185 217 0 chr4 104659066 104659158 -97669189 + MIR3 SINE MIR 77 188 -20 22 0 0 0 chr4 104659283 104659305 -97669042 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr4 104659527 104659550 -97668797 + (T)n Simple_repeat Simple_repeat 1 23 0 2328 96 3 0 chr4 104659956 104660247 -97668100 + AluSg SINE Alu 1 292 -18 2648 138 25 20 chr4 104660247 104660425 -97667922 - L1MA4A LINE L1 -26 6277 6101 2493 63 0 3 chr4 104660425 104660727 -97667620 - AluY SINE Alu -10 301 1 2648 138 25 20 chr4 104660727 104661139 -97667208 - L1MA4A LINE L1 -202 6101 5623 297 353 104 20 chr4 104661349 104661598 -97666749 + L2 LINE L2 2123 2392 -922 192 351 125 58 chr4 104661944 104662289 -97666058 + L2 LINE L2 2819 3186 -86 1486 244 102 36 chr4 104663264 104663617 -97664730 - L1M4 LINE L1 -2222 4160 3832 1841 196 0 0 chr4 104663617 104663918 -97664429 - AluJb SINE Alu -11 301 1 1486 244 102 36 chr4 104663918 104664163 -97664184 - L1M4 LINE L1 -2550 3832 3604 2143 119 0 7 chr4 104664163 104664465 -97663882 - AluSq SINE Alu -13 300 1 1486 244 102 36 chr4 104664465 104664659 -97663688 - L1M4 LINE L1 -2778 3604 3315 2199 122 0 7 chr4 104664972 104665268 -97663079 + AluSx SINE Alu 1 294 -18 284 325 60 8 chr4 104665305 104665422 -97662925 + MIR3 SINE MIR 75 197 -11 14371 34 1 1 chr4 104666471 104668983 -97659364 - L1PA3 LINE L1 -3 6152 3641 4530 178 19 23 chr4 104668987 104669030 -97659317 - L1M2 LINE L1 -707 5584 5542 2168 77 0 28 chr4 104669030 104669315 -97659032 + AluY SINE Alu 20 296 -15 4530 178 19 23 chr4 104669315 104670544 -97657803 - L1M2 LINE L1 -749 5542 4316 * 23347 103 12 3 chr4 104670539 104675003 -97653344 - L1PA7 LINE L1 -2 6152 1657 6691 51 30 0 chr4 104675003 104675865 -97652482 + MER11D LTR ERVK 3 890 -7 1465 157 7 0 chr4 104675865 104676139 -97652208 - L1PA7 LINE L1 -4489 1657 1382 * 2049 265 33 46 chr4 104676108 104676680 -97651667 - L1M4 LINE L1 -3179 2967 2389 2162 111 0 13 chr4 104676680 104676978 -97651369 - AluSq SINE Alu -19 294 1 2049 265 33 46 chr4 104676978 104677571 -97650776 - L1M4 LINE L1 -3757 2389 1799 263 93 23 0 chr4 104677657 104677700 -97650647 + Alu SINE Alu 1 44 -257 258 370 0 19 chr4 104677726 104677834 -97650513 + MIR3 SINE MIR 89 194 -14 287 367 0 10 chr4 104678230 104678328 -97650019 - MER5A DNA MER1_type -1 188 92 285 271 106 72 chr4 104679140 104679477 -97648870 - L1MC4a LINE L1 -83 6038 5689 345 367 84 53 chr4 104679499 104679949 -97648398 + L2 LINE L2 2804 3267 -5 236 186 128 23 chr4 104679977 104680063 -97648284 - L1MC4a LINE L1 -466 5655 5561 321 269 103 47 chr4 104680070 104680320 -97648027 - L1MC4a LINE L1 -654 5520 5255 15337 123 9 22 chr4 104680584 104683134 -97645213 - L1P LINE L1 -3619 2527 11 2401 165 29 5 chr4 104683448 104683866 -97644481 - MSTA LTR MaLR 0 428 1 321 234 298 16 chr4 104683873 104684061 -97644286 - L1ME4a LINE L1 -1 6120 5880 6419 134 6 6 chr4 104684076 104685480 -97642867 - L1MA2 LINE L1 0 6304 4899 27793 122 12 57 chr4 104685621 104692064 -97636283 - L1PA7 LINE L1 -6 6148 2 339 300 70 35 chr4 104692069 104692285 -97636062 - L1ME4a LINE L1 -323 5798 5573 492 56 111 0 chr4 104692400 104692472 -97635875 - MADE1 DNA Mariner 0 80 1 2206 125 0 3 chr4 104692498 104692811 -97635536 - AluSq SINE Alu -1 312 1 393 323 129 43 chr4 104692811 104693178 -97635169 - L1ME4a LINE L1 -694 5427 5093 2102 137 0 13 chr4 104693178 104693484 -97634863 - AluSq SINE Alu -11 302 1 393 323 129 43 chr4 104693484 104693758 -97634589 - L1ME4a LINE L1 -1028 5093 4733 2016 135 20 3 chr4 104694041 104694390 -97633957 + L1MA2 LINE L1 5950 6304 0 335 291 177 27 chr4 104694435 104694632 -97633715 - L1ME4a LINE L1 -3 6118 5883 1903 162 146 8 chr4 104694632 104695008 -97633339 - MSTA LTR MaLR 0 428 1 335 291 177 27 chr4 104695008 104695030 -97633317 - L1ME4a LINE L1 -238 5883 5866 328 287 30 0 chr4 104695066 104695167 -97633180 - L1ME4a LINE L1 -2010 5798 5695 2249 163 66 0 chr4 104695192 104695584 -97632763 - MER47B DNA MER2_type 0 418 1 759 307 27 23 chr4 104696913 104697170 -97631177 + MIR SINE MIR 5 262 0 484 299 25 70 chr4 104697440 104697499 -97630848 + L2 LINE L2 1159 1219 -2095 1328 193 93 25 chr4 104697499 104697820 -97630527 + MER2 DNA MER2_type 1 343 -1 484 299 25 70 chr4 104697820 104698004 -97630343 + L2 LINE L2 1219 1391 -1923 315 219 164 62 chr4 104698111 104698239 -97630108 + L2 LINE L2 3173 3313 0 5346 43 1 38 chr4 104698383 104699088 -97629259 - L1PA7 LINE L1 0 6154 5476 5928 74 1 5 chr4 104699094 104699917 -97628430 - L1PA7 LINE L1 -18 6136 5317 301 329 33 47 chr4 104700072 104700285 -97628062 - L2 LINE L2 -219 3053 2844 471 307 245 7 chr4 104700402 104700812 -97627535 - L2 LINE L2 -26 3287 2781 196 250 0 0 chr4 104700812 104700852 -97627495 - L2 LINE L2 -499 2815 2776 28699 115 9 62 chr4 104700853 104703942 -97624405 - L1PA6 LINE L1 0 6469 3595 1797 174 0 22 chr4 104703942 104704253 -97624094 - AluY SINE Alu -7 304 1 28699 115 9 62 chr4 104704253 104707667 -97620680 - L1PA6 LINE L1 -2874 3595 2 700 192 46 23 chr4 104708164 104708359 -97619988 + MLT1C LTR MaLR 193 467 0 1271 133 0 0 chr4 104708664 104708844 -97619503 - AluSx SINE Alu -132 180 1 399 318 16 16 chr4 104709130 104709256 -97619091 - MIR SINE MIR -109 153 28 354 198 129 0 chr4 104709323 104709424 -97618923 - MIR SINE MIR -2 260 147 491 299 55 46 chr4 104711321 104711536 -97616811 + MIR SINE MIR 44 262 0 1521 185 43 4 chr4 104711826 104712107 -97616240 - AluJb SINE Alu -20 292 1 13847 104 14 5 chr4 104712157 104714124 -97614223 - L1P LINE L1 -4160 1986 1 255 333 87 41 chr4 104714557 104714666 -97613681 - L1MC4a LINE L1 -1870 5938 5835 1642 201 0 3 chr4 104714666 104714970 -97613377 - AluJb SINE Alu -9 303 1 255 333 87 41 chr4 104714970 104715253 -97613094 - L1MC4a LINE L1 -1973 5835 5528 371 316 65 0 chr4 104715255 104715410 -97612937 - L1MC4a LINE L1 -780 5462 5298 2245 114 0 7 chr4 104715432 104715739 -97612608 + AluSc SINE Alu 1 305 -4 207 0 0 0 chr4 104715906 104715929 -97612418 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2073 124 0 0 chr4 104715932 104716214 -97612133 - AluSx SINE Alu -23 289 8 1550 193 67 6 chr4 104716579 104716910 -97611437 + MLT1A1 LTR MaLR 15 365 0 1004 268 138 53 chr4 104716913 104717458 -97610889 + MLT1E LTR MaLR 3 593 0 798 235 65 43 chr4 104718151 104718495 -97609852 + MSTD LTR MaLR 1 396 0 210 37 0 0 chr4 104718613 104718640 -97609707 + (TC)n Simple_repeat Simple_repeat 2 28 0 419 123 0 0 chr4 104718640 104718705 -97609642 - AluS SINE Alu -20 290 226 211 234 0 0 chr4 104718996 104719043 -97609304 + (TA)n Simple_repeat Simple_repeat 1 47 0 24 0 0 0 chr4 104719542 104719566 -97608781 + AT_rich Low_complexity Low_complexity 1 24 0 380 302 89 15 chr4 104720358 104720560 -97607787 - MIR SINE MIR -1 261 45 24 0 0 0 chr4 104720833 104720857 -97607490 + AT_rich Low_complexity Low_complexity 1 24 0 972 266 120 24 chr4 104720874 104721456 -97606891 - L1ME4a LINE L1 -13 6108 5471 285 151 0 0 chr4 104721606 104721659 -97606688 + (ATG)n Simple_repeat Simple_repeat 2 54 0 399 315 61 17 chr4 104721759 104721940 -97606407 + MIR SINE MIR 53 241 -21 222 271 66 49 chr4 104723754 104723876 -97604471 + L2 LINE L2 3149 3272 0 892 209 0 0 chr4 104724850 104725008 -97603339 + FRAM SINE Alu 1 158 -18 361 231 11 33 chr4 104725009 104725100 -97603247 - MIR SINE MIR -11 251 163 230 200 0 163 chr4 104726103 104726157 -97602190 + MIR3 SINE MIR 108 147 -61 598 203 144 7 chr4 104726157 104726310 -97602037 + MER5B DNA MER1_type 2 175 -3 230 200 0 163 chr4 104726310 104726335 -97602012 + MIR3 SINE MIR 147 174 -34 225 0 0 0 chr4 104726864 104726889 -97601458 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 389 249 80 1 chr4 104727028 104727125 -97601222 + MIR SINE MIR 53 146 -62 225 255 94 75 chr4 104727392 104727498 -97600849 + L2 LINE L2 3202 3309 -4 258 105 18 97 chr4 104728919 104729033 -97599314 + (TTA)n Simple_repeat Simple_repeat 1 105 0 2305 65 0 0 chr4 104729153 104729432 -97598915 + AluY SINE Alu 23 301 -10 24 53 0 0 chr4 104729435 104729473 -97598874 + AT_rich Low_complexity Low_complexity 1 38 0 411 325 9 0 chr4 104729929 104730043 -97598304 + L2 LINE L2 3149 3263 -9 262 203 0 51 chr4 104730122 104730181 -97598166 + MIR SINE MIR 78 133 -75 30 0 0 0 chr4 104730803 104730833 -97597514 + AT_rich Low_complexity Low_complexity 1 30 0 189 373 67 0 chr4 104731106 104731181 -97597166 + L2 LINE L2 3173 3252 -20 21 0 0 0 chr4 104731207 104731228 -97597119 + AT_rich Low_complexity Low_complexity 1 21 0 321 26 0 0 chr4 104731727 104731765 -97596582 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr4 104732191 104732214 -97596133 + AT_rich Low_complexity Low_complexity 1 23 0 2900 110 15 15 chr4 104732214 104732669 -97595678 - L1PB2 LINE L1 -1 6150 5696 285 272 22 88 chr4 104732669 104732805 -97595542 - MIR SINE MIR -59 203 77 382 308 7 35 chr4 104732895 104733038 -97595309 - MIR SINE MIR 0 262 124 308 237 13 13 chr4 104734906 104734982 -97593365 - L2 LINE L2 -11 3261 3186 269 323 30 39 chr4 104735036 104735171 -97593176 + MIR SINE MIR 44 184 -59 255 303 46 28 chr4 104735201 104735310 -97593037 + MIR SINE MIR 152 262 0 319 265 60 0 chr4 104736542 104736625 -97591722 + L2 LINE L2 3184 3271 -1 1033 182 0 0 chr4 104736721 104736913 -97591434 + L1PB1 LINE L1 8 199 -6664 14007 190 42 9 chr4 104736913 104742795 -97585552 + L1PB1 LINE L1 633 6867 0 941 196 31 36 chr4 104743506 104743730 -97584617 + MLT1D LTR MaLR 3 225 -280 296 70 0 23 chr4 104743765 104743808 -97584539 - MLT1E1 LTR MaLR 0 654 613 616 256 114 28 chr4 104744815 104745026 -97583321 - MIR SINE MIR -4 258 30 386 286 8 32 chr4 104745040 104745166 -97583181 - MIR SINE MIR 0 262 140 386 280 103 21 chr4 104745320 104745563 -97582784 - HAL1 LINE L1 -603 1904 1642 907 265 102 33 chr4 104745608 104746057 -97582290 + HAL1 LINE L1 594 1073 -1434 2302 48 7 27 chr4 104746062 104746356 -97581991 + AluY SINE Alu 4 291 -20 1943 9 0 0 chr4 104746604 104746816 -97581531 - AluYa5 SINE Alu -3 308 97 235 219 0 31 chr4 104747345 104747409 -97580938 - L1MC4a LINE L1 -1875 5933 5872 1796 179 0 3 chr4 104747450 104747741 -97580606 - AluJb SINE Alu -20 292 3 2492 40 7 3 chr4 104747779 104748079 -97580268 + AluY SINE Alu 1 301 -10 343 309 86 0 chr4 104748349 104748501 -97579846 - L1MC4a LINE L1 -2533 5462 5298 204 40 0 0 chr4 104748891 104748916 -97579431 + (TA)n Simple_repeat Simple_repeat 2 26 0 2118 119 7 0 chr4 104749312 104749607 -97578740 - AluSq SINE Alu -11 302 6 216 182 0 0 chr4 104750135 104750179 -97578168 + (TA)n Simple_repeat Simple_repeat 2 45 0 183 80 0 0 chr4 104751342 104751367 -97576980 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 510 258 106 10 chr4 104751503 104751701 -97576646 - MIR SINE MIR -1 261 45 248 230 100 10 chr4 104752019 104752035 -97576312 - HAL1b LINE L1 -8 1340 1325 929 243 121 60 chr4 104752035 104752174 -97576173 - L1ME4a LINE L1 -51 6070 5941 960 18 0 0 chr4 104752174 104752284 -97576063 + L1PA3 LINE L1 6043 6152 -3 929 243 121 60 chr4 104752284 104752713 -97575634 - L1ME4a LINE L1 -180 5941 1232 226 226 0 19 chr4 104752864 104752917 -97575430 + (ATG)n Simple_repeat Simple_repeat 3 54 0 304 348 61 19 chr4 104752965 104753197 -97575150 + MIR SINE MIR 3 241 -21 204 295 66 49 chr4 104755047 104755169 -97573178 + L2 LINE L2 3149 3272 0 998 190 0 0 chr4 104756013 104756176 -97572171 + FRAM SINE Alu 1 163 -13 378 262 10 29 chr4 104756179 104756282 -97572065 - MIR SINE MIR -6 256 156 1480 98 0 25 chr4 104756323 104756527 -97571820 - AluSg/x SINE Alu -2 310 112 241 203 68 68 chr4 104756544 104756618 -97571729 - L2 LINE L2 -4 3268 3195 21 36 0 0 chr4 104756837 104756865 -97571482 + AT_rich Low_complexity Low_complexity 1 28 0 220 175 0 163 chr4 104757516 104757570 -97570777 + MIR3 SINE MIR 108 147 -61 555 188 149 19 chr4 104757570 104757724 -97570623 + MER5B DNA MER1_type 2 175 -3 220 175 0 163 chr4 104757724 104757749 -97570598 + MIR3 SINE MIR 147 174 -34 218 243 52 184 chr4 104758405 104758541 -97569806 + MIR SINE MIR 29 146 -62 229 242 100 75 chr4 104758803 104758923 -97569424 + L2 LINE L2 3187 3309 -4 24 91 0 0 chr4 104759922 104759988 -97568359 + AT_rich Low_complexity Low_complexity 1 66 0 21 36 0 0 chr4 104760486 104760514 -97567833 + AT_rich Low_complexity Low_complexity 1 28 0 408 316 9 0 chr4 104761041 104761155 -97567192 + L2 LINE L2 3149 3263 -9 31 0 0 0 chr4 104761917 104761948 -97566399 + AT_rich Low_complexity Low_complexity 1 31 0 207 100 0 0 chr4 104762867 104762897 -97565450 + (TG)n Simple_repeat Simple_repeat 2 31 0 1925 113 7 3 chr4 104763359 104763659 -97564688 - L1PB2 LINE L1 -1 6150 5850 254 235 71 35 chr4 104765230 104765315 -97563032 - L2 LINE L2 -23 3249 3162 529 294 94 29 chr4 104765318 104765563 -97562784 + MIR SINE MIR 2 262 0 282 324 49 0 chr4 104766763 104766865 -97561482 + L2 LINE L2 3206 3312 -1 944 207 27 36 chr4 104767554 104767776 -97560571 + MLT1D LTR MaLR 1 220 -285 308 93 0 0 chr4 104767816 104767859 -97560488 - MLT1E2 LTR MaLR 0 626 584 25 31 0 0 chr4 104768843 104768875 -97559472 + AT_rich Low_complexity Low_complexity 1 32 0 573 272 99 10 chr4 104768897 104769099 -97559248 - MIR SINE MIR -10 252 33 443 182 30 30 chr4 104769149 104769248 -97559099 - MIR SINE MIR -30 232 134 449 266 91 33 chr4 104769420 104769661 -97558686 - HAL1 LINE L1 -603 1904 1650 916 277 73 33 chr4 104769713 104770139 -97558208 - HAL1 LINE L1 -1471 1036 594 22 0 0 0 chr4 104770486 104770508 -97557839 + AT_rich Low_complexity Low_complexity 1 22 0 1369 199 18 29 chr4 104770877 104771055 -97557292 - AluJb SINE Alu -22 290 115 3596 100 2 17 chr4 104771055 104771574 -97556773 - MER9 LTR ERVK 0 511 1 1369 199 18 29 chr4 104771574 104771671 -97556676 - AluJb SINE Alu -197 115 18 287 333 62 21 chr4 104771765 104771957 -97556390 - L1MC/D LINE L1 -2081 5727 5528 1554 180 72 12 chr4 104772679 104773013 -97555334 + MLT1A1 LTR MaLR 1 354 -11 1082 253 134 60 chr4 104773026 104773576 -97554771 + MLT1E3 LTR MaLR 3 624 0 2101 116 0 7 chr4 104774196 104774497 -97553850 - AluSc SINE Alu 0 309 11 1117 206 144 39 chr4 104774597 104774692 -97553655 + MSTD LTR MaLR 5 89 -307 1763 122 48 4 chr4 104774692 104774963 -97553384 + AluSx SINE Alu 1 283 -29 441 0 0 0 chr4 104774965 104775014 -97553333 + (CATA)n Simple_repeat Simple_repeat 2 50 0 1117 206 144 39 chr4 104775014 104775270 -97553077 + MSTD LTR MaLR 89 396 0 3206 107 53 4 chr4 104776425 104776900 -97551447 - L1PA13 LINE L1 -219 5942 5445 1282 142 32 20 chr4 104776900 104777127 -97551220 + L1PA13 LINE L1 5914 6163 0 228 241 52 0 chr4 104778702 104778760 -97549587 - MIR SINE MIR -71 137 77 397 309 72 19 chr4 104780382 104780589 -97547758 - MIR SINE MIR 0 262 45 272 293 109 13 chr4 104780906 104781145 -97547202 - L1ME4a LINE L1 -14 6107 5846 634 296 57 10 chr4 104781175 104781472 -97546875 - L1ME4a LINE L1 -344 5777 5467 201 237 0 0 chr4 104781617 104781655 -97546692 + (ATG)n Simple_repeat Simple_repeat 2 39 0 450 0 0 0 chr4 104781679 104781729 -97546618 + (TA)n Simple_repeat Simple_repeat 1 50 0 423 309 54 17 chr4 104781740 104781961 -97546386 + MIR SINE MIR 3 229 -33 1898 153 17 20 chr4 104783409 104783710 -97544637 + AluSx SINE Alu 1 300 -12 23 0 0 0 chr4 104783739 104783762 -97544585 + AT_rich Low_complexity Low_complexity 1 23 0 254 319 34 34 chr4 104784072 104784191 -97544156 + L2 LINE L2 3149 3267 -5 799 206 19 7 chr4 104785150 104785331 -97543016 + AluJb SINE Alu 142 312 0 232 336 9 36 chr4 104785337 104785447 -97542900 - MIR SINE MIR -6 256 150 203 302 103 40 chr4 104785486 104785612 -97542735 - L2 LINE L2 -3 3310 3177 21 82 0 0 chr4 104785760 104785809 -97542538 + AT_rich Low_complexity Low_complexity 1 49 0 568 208 174 7 chr4 104786513 104786662 -97541685 + MER5B DNA MER1_type 2 175 -3 23 0 0 0 chr4 104786946 104786969 -97541378 + AT_rich Low_complexity Low_complexity 1 23 0 200 330 66 66 chr4 104787361 104787467 -97540880 + MIR SINE MIR 41 146 -62 200 245 104 85 chr4 104787742 104787848 -97540499 + L2 LINE L2 3202 3309 -4 21 0 0 0 chr4 104789346 104789367 -97538980 + AT_rich Low_complexity Low_complexity 1 21 0 25 95 0 0 chr4 104789560 104789634 -97538713 + AT_rich Low_complexity Low_complexity 1 74 0 371 297 11 0 chr4 104789967 104790058 -97538289 + L2 LINE L2 3149 3240 -32 265 252 187 19 chr4 104790109 104790216 -97538131 + MIR3 SINE MIR 10 134 -74 23 33 0 0 chr4 104790850 104790880 -97537467 + AT_rich Low_complexity Low_complexity 1 30 0 181 382 73 0 chr4 104791173 104791241 -97537106 + L2 LINE L2 3173 3245 -27 237 83 0 0 chr4 104791371 104791407 -97536940 + (TTTTA)n Simple_repeat Simple_repeat 3 38 0 7816 17 0 0 chr4 104791412 104792657 -97535690 - L1PA2 LINE L1 -5 6150 4906 252 59 0 0 chr4 104793073 104793107 -97535240 + (TG)n Simple_repeat Simple_repeat 1 34 0 27 0 0 0 chr4 104793527 104793554 -97534793 + AT_rich Low_complexity Low_complexity 1 27 0 2764 103 71 0 chr4 104793554 104793979 -97534368 - L1PB2 LINE L1 -1 6150 5696 2024 141 7 0 chr4 104794134 104794438 -97533909 + AluSx SINE Alu 1 306 -6 533 312 13 0 chr4 104794503 104794660 -97533687 - MIR SINE MIR 0 262 104 25 31 0 0 chr4 104795841 104795873 -97532474 + AT_rich Low_complexity Low_complexity 1 32 0 251 289 13 26 chr4 104796575 104796651 -97531696 - L2 LINE L2 -11 3261 3187 342 284 164 0 chr4 104796675 104796809 -97531538 + MIR SINE MIR 2 157 -105 2262 90 183 131 chr4 104796818 104797558 -97530789 - LTR12 LTR ERV1 -55 2032 1 1910 113 32 29 chr4 104797563 104798355 -97529992 + HERV17 LTR ERV1 706 4471 -3314 * 4548 82 21 0 chr4 104798350 104798969 -97529378 + HERV17 LTR ERV1 7757 8388 -11 239 250 143 27 chr4 104798969 104798980 -97529367 + MIR SINE MIR 138 146 -116 5088 57 84 119 chr4 104798980 104799836 -97528511 + LTR12 LTR ERV1 1 826 0 239 250 143 27 chr4 104799836 104799936 -97528411 + MIR SINE MIR 146 262 0 429 313 35 0 chr4 104800685 104800829 -97527518 - MIR SINE MIR -2 260 112 235 250 83 0 chr4 104801204 104801276 -97527071 - MIR SINE MIR -173 89 12 23 0 0 0 chr4 104801453 104801476 -97526871 + AT_rich Low_complexity Low_complexity 1 23 0 37 0 0 0 chr4 104801957 104801994 -97526353 + AT_rich Low_complexity Low_complexity 1 37 0 1816 136 52 35 chr4 104802050 104802417 -97525930 + THE1C LTR MaLR 1 373 -2 261 256 213 19 chr4 104802516 104802676 -97525671 - MIR SINE MIR 0 262 72 6903 129 92 128 chr4 104802726 104804485 -97523862 + pTR5 LTR ERV1 743 2438 0 822 263 91 13 chr4 104804490 104804722 -97523625 - MIR SINE MIR 0 262 13 686 233 7 0 chr4 104805524 104805674 -97522673 + MIR SINE MIR 112 262 0 476 225 135 45 chr4 104805921 104806099 -97522248 + LTR50 LTR ERVL 9 202 -593 281 269 166 31 chr4 104806281 104806474 -97521873 + LTR33A LTR ERVL 305 523 0 214 178 0 22 chr4 104806536 104806581 -97521766 + CT-rich Low_complexity Low_complexity 1 44 0 9368 156 17 10 chr4 104807010 104807841 -97520506 - L1MA2 LINE L1 0 7723 6899 1939 157 3 3 chr4 104807841 104808135 -97520212 + AluSc SINE Alu 1 294 -15 9368 156 17 10 chr4 104808135 104810276 -97518071 - L1MA2 LINE L1 -824 6899 4725 3220 116 15 44 chr4 104810276 104810802 -97517545 + MER9 LTR ERVK 1 511 0 3906 95 19 18 chr4 104810802 104811369 -97516978 + HERVK9 LTR ERVK 1 568 -5348 * 33461 91 5 5 chr4 104811367 104815858 -97512489 + HERVK9 LTR ERVK 1424 5916 0 3125 127 20 10 chr4 104815858 104816364 -97511983 + MER9 LTR ERVK 1 511 0 5929 158 54 10 chr4 104816364 104817671 -97510676 - L1MA2 LINE L1 -2835 4730 3293 2080 134 0 0 chr4 104817671 104817961 -97510386 - AluSg SINE Alu -20 290 1 5929 158 54 10 chr4 104817961 104818663 -97509684 - L1MA2 LINE L1 -4272 3293 2623 2145 108 24 14 chr4 104818675 104818970 -97509377 - AluSc SINE Alu -11 298 1 1151 204 13 4 chr4 104819041 104819276 -97509071 - MLT1D LTR MaLR -2 503 267 1027 241 53 49 chr4 104819324 104819797 -97508550 - HAL1 LINE L1 -1053 1454 980 281 234 13 13 chr4 104819797 104819874 -97508473 + (TA)n Simple_repeat Simple_repeat 1 77 0 2005 116 21 85 chr4 104819896 104820285 -97508062 + THE1B LTR MaLR 1 364 0 372 319 181 0 chr4 104820305 104820487 -97507860 - HAL1 LINE L1 -1706 801 587 2241 97 7 13 chr4 104820811 104821111 -97507236 - AluSq SINE Alu -12 301 4 23 78 0 0 chr4 104821327 104821378 -97506969 + AT_rich Low_complexity Low_complexity 1 51 0 1894 141 0 0 chr4 104821448 104821724 -97506623 + AluSx SINE Alu 28 303 -9 3688 181 44 63 chr4 104821748 104821897 -97506450 + L1M2 LINE L1 1923 2073 -4775 3443 120 35 46 chr4 104821897 104822504 -97505843 - MER4A LTR ERV1 0 600 1 3688 181 44 63 chr4 104822504 104823537 -97504810 + L1M2 LINE L1 2073 3085 -3763 1600 144 35 3 chr4 104823523 104823808 -97504539 + L1MA5 LINE L1 5808 6101 -199 * 497 278 6 28 chr4 104823934 104824110 -97504237 + L1M2 LINE L1 3256 3427 -3421 271 264 14 0 chr4 104824508 104824580 -97503767 + MER94 DNA DNA 1 73 -61 194 153 242 61 chr4 104825234 104825327 -97503020 - MIR SINE MIR -29 179 67 214 352 56 24 chr4 104828158 104828283 -97500064 - MIR3 SINE MIR -45 163 35 421 251 150 0 chr4 104829884 104830027 -97498320 + MER5A DNA MER1_type 4 171 -18 3069 183 4 2 chr4 104830053 104830578 -97497769 + MER1A DNA MER1_type 1 526 -1 2466 171 42 6 chr4 104832321 104832843 -97495504 + L1MB2 LINE L1 4084 4624 -1522 * 3807 226 49 60 chr4 104832842 104833782 -97494565 - MLT1A1-int LTR MaLR -752 983 52 2411 95 0 0 chr4 104833782 104834086 -97494261 - AluY SINE Alu -7 304 1 3807 226 49 60 chr4 104834086 104834136 -97494211 - MLT1A1-int LTR MaLR -1683 52 3 749 231 218 44 chr4 104834138 104834454 -97493893 - MLT1A1 LTR MaLR 0 374 4 4488 196 17 8 chr4 104834521 104836008 -97492339 + L1MB2 LINE L1 4662 6163 -8 1060 278 189 8 chr4 104836011 104836630 -97491717 + L1MEc LINE L1 1015 1745 -4651 336 269 109 45 chr4 104836616 104836817 -97491530 + L1ME1 LINE L1 5936 6149 -17 * 3856 70 6 15 chr4 104836841 104837368 -97490979 - L1PA8 LINE L1 0 6172 5651 2747 59 0 0 chr4 104837368 104837874 -97490473 + L1P3 LINE L1 5104 5609 -563 638 224 13 0 chr4 104838182 104838338 -97490009 - L1MB2 LINE L1 -1 6170 6013 320 268 45 36 chr4 104838512 104838624 -97489723 - MER94 DNA DNA -1 133 21 2551 185 17 17 chr4 104838624 104839088 -97489259 + L1MA3 LINE L1 20 483 -7082 * 5109 144 36 26 chr4 104839086 104840034 -97488313 + L1MA3 LINE L1 1573 2593 -4972 11087 155 23 6 chr4 104840034 104841226 -97487121 + L1MA3 LINE L1 4616 5786 -1938 180 0 0 0 chr4 104841226 104841246 -97487101 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 11087 155 23 6 chr4 104841246 104842595 -97485752 + L1MA3 LINE L1 5786 7222 -502 1504 170 34 81 chr4 104842595 104842918 -97485429 + AluJo SINE Alu 1 308 -4 11087 155 23 6 chr4 104842918 104843430 -97484917 + L1MA3 LINE L1 7222 7724 0 670 348 29 32 chr4 104843900 104844274 -97484073 + MLT1K LTR MaLR 3 375 -213 275 275 70 18 chr4 104844384 104844509 -97483838 - MIR SINE MIR -66 142 36 1019 163 0 6 chr4 104845259 104845425 -97482922 - MLT1A1 LTR MaLR -3 362 198 1379 184 4 0 chr4 104845428 104845656 -97482691 - AluJo SINE Alu -83 229 1 806 175 0 44 chr4 104845659 104845819 -97482528 - MLT1A1 LTR MaLR -212 153 1 703 278 68 12 chr4 104847995 104848247 -97480100 + LTR33 LTR ERVL 256 521 0 202 226 38 38 chr4 104848801 104848854 -97479493 + L2 LINE L2 1370 1422 -1892 1909 88 92 3 chr4 104848994 104849278 -97479069 + L1PB1 LINE L1 5843 6151 0 216 97 0 0 chr4 104849336 104849367 -97478980 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 186 382 33 33 chr4 104849523 104849675 -97478672 - L2 LINE L2 -215 3057 2906 2076 118 48 40 chr4 104850494 104850866 -97477481 - THE1C LTR MaLR 0 375 1 1198 40 0 13 chr4 104851969 104852121 -97476226 - L1PA8 LINE L1 -6 6166 6017 21 0 0 0 chr4 104852719 104852740 -97475607 + AT_rich Low_complexity Low_complexity 1 21 0 456 314 47 60 chr4 104853042 104853360 -97474987 + L2 LINE L2 2874 3187 -126 4614 153 8 16 chr4 104853362 104854101 -97474246 - MER52A LTR ERV1 0 1755 1023 377 308 25 0 chr4 104854110 104854230 -97474117 + L2 LINE L2 3188 3310 -3 26 0 0 0 chr4 104854566 104854592 -97473755 + AT_rich Low_complexity Low_complexity 1 26 0 523 27 27 0 chr4 104854948 104855021 -97473326 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 23 54 0 0 chr4 104855494 104855531 -97472816 + AT_rich Low_complexity Low_complexity 1 37 0 193 289 72 31 chr4 104856581 104856678 -97471669 - L2 LINE L2 -244 3028 2928 197 421 51 13 chr4 104856979 104857214 -97471133 - L2 LINE L2 -703 2611 2368 213 189 0 75 chr4 104857616 104857669 -97470678 + L2 LINE L2 3264 3312 -1 194 299 213 16 chr4 104857869 104857996 -97470351 + MIR SINE MIR 20 171 -91 2215 118 24 37 chr4 104858182 104858562 -97469785 + THE1C LTR MaLR 1 375 0 3048 263 68 71 chr4 104858915 104859014 -97469333 + L2 LINE L2 1606 1704 -1609 2915 52 0 0 chr4 104859014 104859376 -97468971 + L1PA8 LINE L1 5803 6164 -8 3048 263 68 71 chr4 104859376 104861005 -97467342 + L2 LINE L2 1704 3313 0 198 348 125 38 chr4 104861198 104861382 -97466965 + MIR SINE MIR 20 219 -43 7081 94 1 6 chr4 104864105 104865871 -97462476 + L1PA8A LINE L1 4363 6125 -6 25 65 0 0 chr4 104866063 104866109 -97462238 + AT_rich Low_complexity Low_complexity 1 46 0 11581 31 3 0 chr4 104866109 104868257 -97460090 - L1PA3 LINE L1 -1 6154 4003 16494 38 1 1 chr4 104868257 104870306 -97458041 + L1PA3 LINE L1 1954 4003 -2143 269 368 49 0 chr4 104872985 104873129 -97455218 - MIR3 SINE MIR -11 197 47 196 297 99 22 chr4 104873417 104873508 -97454839 + L2 LINE L2 3153 3250 -22 22 0 0 0 chr4 104873719 104873741 -97454606 + AT_rich Low_complexity Low_complexity 1 22 0 2042 118 7 13 chr4 104874023 104874329 -97454018 - AluSc SINE Alu -5 304 1 5946 123 9 0 chr4 104874443 104875712 -97452635 + L1PA15 LINE L1 4877 6159 -6 587 215 8 8 chr4 104876085 104876206 -97452141 - FLAM_A SINE Alu -9 124 4 256 175 97 58 chr4 104876661 104876731 -97451616 + L1ME4a LINE L1 6015 6092 -29 2354 125 40 3 chr4 104876731 104877107 -97451240 + MLT1B LTR MaLR 1 390 0 256 175 97 58 chr4 104877107 104877139 -97451208 + L1ME4a LINE L1 6092 6121 0 303 373 44 19 chr4 104877319 104877477 -97450870 + L3 LINE CR1 1404 1565 -12 26 50 0 0 chr4 104877906 104877946 -97450401 + AT_rich Low_complexity Low_complexity 1 40 0 221 391 0 11 chr4 104879151 104879238 -97449109 + MER91A DNA MER1_type 1 86 -110 488 255 19 0 chr4 104880932 104881038 -97447309 + MER81 DNA DNA 6 113 -1 403 60 179 0 chr4 104883163 104883230 -97445117 + MADE1 DNA Mariner 2 80 0 278 293 164 14 chr4 104883865 104884005 -97444342 - MIR SINE MIR -28 234 74 5984 99 19 0 chr4 104884042 104885959 -97442388 + L1PA13 LINE L1 4201 6144 -19 236 313 38 0 chr4 104885970 104886050 -97442297 - MIR SINE MIR -133 129 47 213 307 13 13 chr4 104886379 104886454 -97441893 + MER5B DNA MER1_type 2 76 -102 836 225 192 4 chr4 104886548 104886576 -97441771 + MER5C DNA MER1_type 1 22 -302 225 0 0 0 chr4 104886576 104886601 -97441746 + (TTA)n Simple_repeat Simple_repeat 1 25 0 836 225 192 4 chr4 104886601 104886843 -97441504 + MER5C DNA MER1_type 22 322 -2 221 263 158 0 chr4 104887886 104887981 -97440366 - MIR SINE MIR -65 197 88 25 31 0 0 chr4 104888215 104888247 -97440100 + AT_rich Low_complexity Low_complexity 1 32 0 258 320 50 21 chr4 104888694 104888812 -97439535 + MIR SINE MIR 45 170 -59 481 325 19 43 chr4 104888844 104889053 -97439294 + MIR SINE MIR 59 262 0 2147 196 42 22 chr4 104889338 104889791 -97438556 + MLT1C LTR MaLR 6 467 0 1795 137 18 62 chr4 104891144 104891185 -97437162 + MER65A LTR ERV1 1 42 -403 207 0 0 0 chr4 104891185 104891208 -97437139 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1795 137 18 62 chr4 104891208 104891503 -97436844 + MER65A LTR ERV1 42 322 -123 18595 173 28 5 chr4 104891503 104898654 -97429693 - L1PA14 LINE L1 -21 7578 2 984 125 0 25 chr4 104898654 104898814 -97429533 + MER65A LTR ERV1 290 445 0 309 264 129 26 chr4 104899328 104899483 -97428864 + MIR SINE MIR 22 192 -70 234 0 0 0 chr4 104899684 104899710 -97428637 + (TG)n Simple_repeat Simple_repeat 2 27 0 330 303 86 43 chr4 104899794 104900028 -97428319 - MLT1L LTR MaLR -198 417 174 844 197 39 67 chr4 104900166 104900420 -97427927 + MER90 LTR ERV1 5 251 -324 1501 200 195 15 chr4 104900423 104900889 -97427458 + MLT1F1 LTR MaLR 13 562 -5 1479 230 12 12 chr4 104900895 104901225 -97427122 + MER90 LTR ERV1 275 604 -10 840 293 45 8 chr4 104901321 104901563 -97426784 - MIR SINE MIR 0 262 12 223 338 14 0 chr4 104903370 104903444 -97424903 + MIR SINE MIR 50 124 -138 285 139 23 12 chr4 104903605 104903691 -97424656 + (TA)n Simple_repeat Simple_repeat 2 88 0 2139 128 0 0 chr4 104903695 104903984 -97424363 - AluSx SINE Alu -23 289 1 315 230 53 112 chr4 104904045 104904232 -97424115 + LTR33 LTR ERVL 44 219 -302 254 345 35 0 chr4 104904329 104904445 -97423902 + LTR33 LTR ERVL 378 497 -24 641 282 46 37 chr4 104904603 104904844 -97423503 + MIR SINE MIR 20 262 0 199 271 65 4 chr4 104905065 104905192 -97423155 - MER5B DNA MER1_type -6 183 4 455 222 56 130 chr4 104907176 104907446 -97420901 + MLT1C LTR MaLR 6 255 -135 1561 192 47 26 chr4 104907446 104907652 -97420695 - L1M2 LINE L1 -681 7050 6850 2164 110 0 13 chr4 104907652 104907952 -97420395 - AluSx SINE Alu -14 298 3 1561 192 47 26 chr4 104907952 104908248 -97420099 - L1M2 LINE L1 -881 6850 6544 4803 174 92 7 chr4 104908254 104909299 -97419048 - L1M2 LINE L1 -1215 6350 5217 282 248 103 0 chr4 104909300 104909417 -97418930 - L1M2 LINE L1 -4385 3180 3052 967 175 183 4 chr4 104909417 104909657 -97418690 - MER33 DNA MER1_type -34 290 8 23 54 0 0 chr4 104909697 104909734 -97418613 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr4 104909801 104909834 -97418513 + AT_rich Low_complexity Low_complexity 1 33 0 702 169 57 0 chr4 104909918 104910042 -97418305 + FLAM_C SINE Alu 1 131 -2 339 44 0 0 chr4 104910370 104910415 -97417932 + (TG)n Simple_repeat Simple_repeat 2 46 0 237 221 15 44 chr4 104912272 104912340 -97416007 + L3 LINE CR1 1497 1562 -15 2417 123 3 14 chr4 104912379 104912745 -97415602 - THE1B LTR MaLR 0 364 3 919 143 38 33 chr4 104915512 104915722 -97412625 + L1M4b LINE L1 1350 1560 -5299 1335 176 126 56 chr4 104915722 104916063 -97412284 - MLT1A1 LTR MaLR 0 365 1 2297 242 5 7 chr4 104916067 104916647 -97411700 - MLT1A1-int LTR MaLR -4 1731 1064 226 255 0 0 chr4 104916707 104916758 -97411589 + L1MB8 LINE L1 5500 5550 -571 2127 186 34 40 chr4 104916794 104917325 -97411022 + L1MB8 LINE L1 5647 6174 -4 208 161 32 0 chr4 104918296 104918358 -97409989 + (TA)n Simple_repeat Simple_repeat 2 65 0 1180 273 126 22 chr4 104918386 104918830 -97409517 + L2 LINE L2 2319 2808 -506 1002 110 104 0 chr4 104918922 104919085 -97409262 - L1PA13 LINE L1 0 6163 5984 4158 101 16 5 chr4 104919091 104919732 -97408615 + L1PA13 LINE L1 5341 5988 -180 283 336 66 7 chr4 104919740 104919877 -97408470 + L2 LINE L2 3167 3311 -2 2581 11 0 0 chr4 104920149 104920430 -97407917 + AluYb8 SINE Alu 32 312 -6 716 137 0 17 chr4 104920814 104920931 -97407416 - AluJo SINE Alu -177 135 21 3348 206 67 16 chr4 104921303 104922125 -97406222 + ERVL-C1 LTR ERVL 4828 5691 -73 9476 196 31 15 chr4 104922126 104922935 -97405412 - L1PA15 LINE L1 -6 7597 6803 3595 63 13 0 chr4 104922935 104923382 -97404965 + MLT2A2 LTR ERVL 1 453 0 9476 196 31 15 chr4 104923382 104925557 -97402790 - L1PA15 LINE L1 -800 6803 4566 6054 226 19 12 chr4 104925563 104928331 -97400016 - L1PA15 LINE L1 -3121 4463 1674 1079 288 31 36 chr4 104928321 104928710 -97399637 - L1PA15 LINE L1 -7185 396 10 * 1414 189 9 31 chr4 104928787 104928853 -97399494 + MLT2C1 LTR ERVL 1 67 -330 1695 201 78 16 chr4 104928853 104929226 -97399121 + MSTD LTR MaLR 1 396 0 1414 189 9 31 chr4 104929226 104929482 -97398865 + MLT2C1 LTR ERVL 67 316 -81 3363 123 18 6 chr4 104929622 104930127 -97398220 - MER9 LTR ERVK 0 511 1 2220 60 0 0 chr4 104930127 104930409 -97397938 - HERVK9 LTR ERVK 0 5916 5635 13758 83 7 4 chr4 104930505 104932424 -97395923 - HERVK9 LTR ERVK -282 5634 3711 1006 52 0 8 chr4 104932424 104932558 -97395789 - HERVK9 LTR ERVK -3130 2786 2654 * 16257 88 31 27 chr4 104932557 104934205 -97394142 - HERVK9 LTR ERVK -3447 2469 752 187 241 0 93 chr4 104934205 104934259 -97394088 - MER5B DNA MER1_type -72 106 58 16257 88 31 27 chr4 104934259 104935015 -97393332 - HERVK9 LTR ERVK -5164 752 1 2141 105 3 32 chr4 104935015 104935359 -97392988 - MER9 LTR ERVK 0 511 178 41125 51 2 0 chr4 104935363 104941510 -97386837 + L1PA4 LINE L1 1 6155 0 1346 80 5 0 chr4 104941513 104941701 -97386646 - MER9 LTR ERVK -322 189 1 393 333 116 9 chr4 104942979 104943204 -97385143 - MIR SINE MIR -11 251 3 230 374 52 7 chr4 104943406 104943561 -97384786 + MIR3 SINE MIR 2 163 -45 1754 220 57 26 chr4 104943674 104944022 -97384325 + L1ME1 LINE L1 5603 5975 -191 1863 168 61 3 chr4 104944022 104944367 -97383980 - MLT1A1 LTR MaLR 0 365 1 1754 220 57 26 chr4 104944367 104944559 -97383788 + L1ME1 LINE L1 5975 6160 -6 1111 262 78 14 chr4 104944586 104945021 -97383326 + L1ME3A LINE L1 5433 5895 -275 280 340 124 16 chr4 104945476 104945661 -97382686 - MIR SINE MIR -37 225 21 342 254 156 18 chr4 104945835 104946006 -97382341 + MIR SINE MIR 23 219 -43 5461 241 20 22 chr4 104946778 104949316 -97379031 - L1PBa LINE L1 -5224 1639 3 585 252 134 31 chr4 104949333 104949623 -97378724 - L1M4c LINE L1 -4788 1596 1277 439 219 8 8 chr4 104949624 104949747 -97378600 + CT-rich Low_complexity Low_complexity 1 123 0 267 247 55 14 chr4 104949761 104949777 -97378570 - FAM SINE Alu -156 155 141 1019 93 6 22 chr4 104949777 104949960 -97378387 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 267 247 55 14 chr4 104949960 104950016 -97378331 - FAM SINE Alu -170 141 102 501 336 40 62 chr4 104950087 104950537 -97377810 - L1M4c LINE L1 -5698 615 176 720 205 0 8 chr4 104950883 104951010 -97377337 - FLAM_C SINE Alu -17 126 1 1216 203 93 38 chr4 104951195 104951635 -97376712 - MLT1E1 LTR MaLR -133 521 1 698 203 0 0 chr4 104952019 104952157 -97376190 - MLT1B LTR MaLR 0 390 253 1471 210 13 54 chr4 104952157 104952547 -97375800 - MLT1A2 LTR MaLR 0 374 1 442 289 45 69 chr4 104953267 104953513 -97374834 + MLT1J LTR MaLR 272 511 0 267 442 14 14 chr4 104954756 104954903 -97373444 - MIR3 SINE MIR -47 161 15 252 227 18 18 chr4 104956838 104956948 -97371399 + CT-rich Low_complexity Low_complexity 4 113 0 5600 106 13 5 chr4 104957422 104958449 -97369898 + L1PB2 LINE L1 5074 6108 -43 3561 85 4 10 chr4 104958449 104958954 -97369393 + L1PA13 LINE L1 5660 6162 -1 401 51 17 0 chr4 104958954 104959007 -97369340 + L1PB2 LINE L1 6090 6149 -2 38 0 0 0 chr4 104959007 104959045 -97369302 + AT_rich Low_complexity Low_complexity 1 38 0 402 294 29 44 chr4 104959364 104959500 -97368847 - L2 LINE L2 -5 3308 3175 314 291 45 89 chr4 104959497 104959676 -97368671 - L2 LINE L2 -946 2368 2198 * 235 232 18 0 chr4 104959683 104959739 -97368608 + (TTCA)n Simple_repeat Simple_repeat 3 59 0 337 340 14 14 chr4 104960041 104960188 -97368159 + L2 LINE L2 1780 1926 -1388 257 323 82 36 chr4 104960189 104960384 -97367963 - MLT1K LTR MaLR -64 524 321 1350 302 58 59 chr4 104960717 104961495 -97366852 + L2 LINE L2 1936 2712 -602 457 192 0 0 chr4 104961506 104961584 -97366763 + AluS SINE Alu 1 78 -235 1046 121 30 18 chr4 104961584 104961750 -97366597 + AluJo/FRAM SINE Alu 145 312 0 243 0 0 0 chr4 104961753 104961780 -97366567 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 510 46 0 0 chr4 104961779 104961844 -97366503 + (GA)n Simple_repeat Simple_repeat 2 66 0 366 308 141 33 chr4 104961853 104962143 -97366204 + L2 LINE L2 2730 3060 -212 969 280 78 19 chr4 104962221 104962567 -97365780 - LTR16A LTR ERVL -27 430 59 344 250 86 9 chr4 104962685 104962801 -97365546 + L2 LINE L2 3184 3308 -5 224 329 75 31 chr4 104962914 104963075 -97365272 - L2 LINE L2 -611 2703 2536 2332 79 0 20 chr4 104963324 104963629 -97364718 - AluY SINE Alu -12 299 1 2027 122 0 10 chr4 104964326 104964620 -97363727 + AluSg SINE Alu 1 291 -19 323 271 188 36 chr4 104964686 104964963 -97363384 - L2 LINE L2 -111 3202 2884 293 259 0 114 chr4 104966305 104966463 -97361884 + L2 LINE L2 3132 3271 -1 230 273 39 13 chr4 104966668 104966745 -97361602 - MIR SINE MIR -12 250 172 2142 53 0 8 chr4 104967213 104967477 -97360870 - AluY SINE Alu -9 302 41 3197 208 64 32 chr4 104967933 104968749 -97359598 - L1ME1 LINE L1 -5 6161 5293 2169 84 7 20 chr4 104968749 104969046 -97359301 + AluSc SINE Alu 1 293 -16 3197 208 64 32 chr4 104969046 104969193 -97359154 - L1ME1 LINE L1 -873 5293 5152 4618 221 98 25 chr4 104969204 104970680 -97357667 - L1ME1 LINE L1 -1962 4184 2602 1688 115 0 36 chr4 104970697 104970950 -97357397 - MER1B DNA MER1_type -35 304 61 966 224 28 8 chr4 104970981 104971236 -97357111 - L1ME1 LINE L1 -3539 2607 2348 569 221 144 71 chr4 104971243 104971778 -97356569 - L1M4 LINE L1 -2685 3461 2888 1736 160 57 21 chr4 104971804 104972136 -97356211 - THE1C LTR MaLR -31 344 1 439 135 79 22 chr4 104972136 104972225 -97356122 + MER6 DNA MER2_type 51 865 0 557 277 64 76 chr4 104974257 104974571 -97353776 + L2 LINE L2 3004 3313 0 349 311 0 29 chr4 104974825 104974928 -97353419 + L2 LINE L2 3189 3288 -25 3330 178 11 11 chr4 104975313 104975942 -97352405 + L1PA16 LINE L1 5523 6151 -15 409 341 62 29 chr4 104976238 104976446 -97351901 - L2 LINE L2 -409 2905 2691 602 342 35 15 chr4 104976570 104976909 -97351438 + L1MEc LINE L1 77 422 -5974 5656 77 13 1 chr4 104977208 104977963 -97350384 - L1PA11 LINE L1 -2 6172 5409 5378 226 31 60 chr4 104977963 104979883 -97348464 - L1PA12 LINE L1 -3979 3605 885 3195 165 23 3 chr4 104980065 104980634 -97347713 + LTR22 LTR ERVK 1 580 0 535 265 0 0 chr4 104981562 104981679 -97346668 - MER5A DNA MER1_type -72 117 1 2298 69 45 0 chr4 104985969 104986258 -97342089 + AluY SINE Alu 1 302 -9 557 248 7 14 chr4 104986414 104986559 -97341788 - MIR SINE MIR -7 255 112 442 286 177 27 chr4 104986651 104986771 -97341576 - MLT1J2 LTR MaLR -121 329 228 1898 201 46 44 chr4 104986771 104987274 -97341073 - MLT1D LTR MaLR -1 504 1 442 286 177 27 chr4 104987274 104987373 -97340974 - MLT1J2 LTR MaLR -222 228 77 327 263 121 56 chr4 104987556 104988256 -97340091 - L1M4 LINE L1 -2504 3642 2897 288 297 11 19 chr4 104989241 104989335 -97339012 - MIR SINE MIR -57 151 64 1542 214 50 31 chr4 104990205 104990663 -97337684 + MLT1C LTR MaLR 1 467 0 25 0 0 0 chr4 104990666 104990691 -97337656 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr4 104991032 104991070 -97337277 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr4 104992172 104992193 -97336154 + AT_rich Low_complexity Low_complexity 1 21 0 377 262 150 31 chr4 104993284 104993424 -97334923 + L1ME4a LINE L1 5671 5793 -328 1771 175 0 29 chr4 104993424 104993732 -97334615 - AluJb SINE Alu -13 299 1 377 262 150 31 chr4 104993732 104993982 -97334365 + L1ME4a LINE L1 5793 6106 -15 273 367 87 0 chr4 104994422 104994572 -97333775 - MIR3 SINE MIR -43 165 3 6750 120 52 40 chr4 104994596 104995813 -97332534 + Tigger3b DNA MER2_type 1 1231 0 612 136 186 7 chr4 104996317 104996457 -97331890 - MER3 DNA MER1_type 0 209 45 795 270 42 49 chr4 104996678 104996941 -97331406 + MIR SINE MIR 2 262 0 2373 96 0 6 chr4 104997677 104997989 -97330358 + AluSg SINE Alu 1 310 0 1277 142 33 53 chr4 104998701 104999004 -97329343 - MER33 DNA MER1_type -7 317 21 242 224 0 0 chr4 105001069 105001118 -97327229 + (CATA)n Simple_repeat Simple_repeat 3 51 0 338 176 0 44 chr4 105001539 105001607 -97326740 - MER116 DNA Mariner -2 78 14 818 257 104 42 chr4 105002766 105003198 -97325149 + L1ME4a LINE L1 5491 5949 -172 28 61 0 0 chr4 105003234 105003283 -97325064 + AT_rich Low_complexity Low_complexity 1 49 0 315 359 18 18 chr4 105003757 105003924 -97324423 + L1M4 LINE L1 2972 3138 -3008 2187 89 0 51 chr4 105004188 105004501 -97323846 - AluSg SINE Alu -13 297 1 195 69 0 0 chr4 105004665 105004694 -97323653 + (CAT)n Simple_repeat Simple_repeat 3 31 0 1663 145 41 4 chr4 105005135 105005404 -97322943 + AluSx SINE Alu 1 279 -33 2503 278 23 39 chr4 105005660 105007020 -97321327 - L1PBa LINE L1 -5224 1639 544 261 197 0 0 chr4 105007080 105007146 -97321201 + C-rich Low_complexity Low_complexity 1 66 0 352 330 67 14 chr4 105007953 105008162 -97320185 + MIR SINE MIR 23 242 -20 2177 116 3 3 chr4 105009049 105009343 -97319004 - AluSp SINE Alu -19 294 1 539 165 94 31 chr4 105009644 105009771 -97318576 + MER69 DNA AcHobo 13 147 -1079 245 247 41 0 chr4 105009768 105009841 -97318506 + MER69 DNA AcHobo 2450 2525 -1 * 2324 62 0 13 chr4 105009948 105010253 -97318094 - AluSc SINE Alu -6 303 3 1898 92 18 11 chr4 105010269 105010552 -97317795 - AluSq SINE Alu -28 285 1 752 124 0 0 chr4 105011866 105011979 -97316368 + AluSg/x SINE Alu 186 298 -14 234 0 0 0 chr4 105011994 105012020 -97316327 + (TG)n Simple_repeat Simple_repeat 1 26 0 2495 58 0 7 chr4 105012308 105012617 -97315730 - AluSc SINE Alu -2 307 1 2198 95 3 0 chr4 105012617 105012913 -97315434 - AluSq SINE Alu -16 297 1 228 333 121 23 chr4 105015326 105015458 -97312889 - L2 LINE L2 0 3313 3169 253 318 30 90 chr4 105015674 105015800 -97312547 - L2 LINE L2 -821 2493 2382 2438 68 0 0 chr4 105015800 105016111 -97312236 + AluY SINE Alu 1 311 0 253 318 30 90 chr4 105016111 105016185 -97312162 - L2 LINE L2 -932 2382 2305 574 319 156 3 chr4 105016260 105016548 -97311799 - MER102b DNA MER1_type 0 341 10 4582 195 85 33 chr4 105017936 105019383 -97308964 + L1MC3 LINE L1 4109 7782 -3 820 323 18 35 chr4 105019882 105020349 -97307998 - L1MEc LINE L1 -4600 1796 1338 1788 202 73 43 chr4 105020349 105020839 -97307508 + MLT1D LTR MaLR 1 505 0 820 323 18 35 chr4 105020839 105020916 -97307431 - L1MEc LINE L1 -5058 1338 1261 2774 7 0 0 chr4 105026206 105026511 -97301836 + AluYa5 SINE Alu 1 305 -6 245 215 46 0 chr4 105026626 105026691 -97301656 - MER69 DNA AcHobo -9 2517 2450 * 536 165 94 31 chr4 105026688 105026815 -97301532 - MER69 DNA AcHobo -1079 147 13 1595 122 5 0 chr4 105027116 105027338 -97301009 + AluSp SINE Alu 1 223 -90 279 203 0 0 chr4 105027441 105027500 -97300847 + A-rich Low_complexity Low_complexity 1 59 0 470 234 151 103 chr4 105029063 105029520 -97298827 + L2 LINE L2 2713 3207 -106 1932 158 7 0 chr4 105029591 105029901 -97298446 + AluJb SINE Alu 1 312 0 322 301 11 0 chr4 105029921 105030014 -97298333 + L2 LINE L2 3220 3313 0 867 223 14 56 chr4 105030072 105030133 -97298214 + MIR SINE MIR 5 67 -195 2268 114 16 0 chr4 105030133 105030439 -97297908 + AluSx SINE Alu 1 311 -1 867 223 14 56 chr4 105030439 105030592 -97297755 + MIR SINE MIR 67 210 -52 182 37 37 0 chr4 105031544 105031571 -97296776 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 262 349 133 8 chr4 105032138 105032387 -97295960 + L3 LINE CR1 1046 1325 -252 654 309 86 8 chr4 105035010 105035253 -97293094 - MIR SINE MIR 0 262 1 363 192 0 0 chr4 105038522 105038600 -97289747 + (TA)n Simple_repeat Simple_repeat 2 79 0 326 267 47 0 chr4 105038600 105038686 -97289661 - L1MC4 LINE L1 -1339 6703 6614 326 267 47 0 chr4 105038712 105038798 -97289549 - L1MC4 LINE L1 -1339 6703 6614 269 206 22 43 chr4 105038836 105038928 -97289419 - L1MC4 LINE L1 -1339 6703 6614 267 140 0 0 chr4 105038934 105038984 -97289363 + (TA)n Simple_repeat Simple_repeat 2 51 0 383 228 35 26 chr4 105039895 105040009 -97288338 - MER5A DNA MER1_type 0 189 75 357 308 16 81 chr4 105039897 105040014 -97288333 + MER5A DNA MER1_type 17 119 -70 * 2310 71 21 0 chr4 105040014 105040297 -97288050 - AluSx SINE Alu -21 291 3 357 308 16 81 chr4 105040297 105040364 -97287983 + MER5A DNA MER1_type 119 189 0 208 286 181 19 chr4 105040365 105040470 -97287877 - MIR3 SINE MIR -49 159 38 287 25 25 0 chr4 105040922 105040962 -97287385 + (CA)n Simple_repeat Simple_repeat 2 42 0 204 97 0 0 chr4 105041950 105041981 -97286366 + (TG)n Simple_repeat Simple_repeat 2 32 0 6415 144 41 30 chr4 105041981 105043197 -97285150 - Tigger3b DNA MER2_type -1 1230 1 254 320 86 23 chr4 105043197 105043325 -97285022 + L2 LINE L2 3173 3308 -5 32 26 0 0 chr4 105043881 105043920 -97284427 + AT_rich Low_complexity Low_complexity 1 39 0 809 268 57 12 chr4 105044073 105044442 -97283905 - MLT1G LTR MaLR -196 359 13 325 80 20 0 chr4 105046467 105046517 -97281830 + MADE1 DNA Mariner 1 51 -29 24 53 0 0 chr4 105048377 105048415 -97279932 + AT_rich Low_complexity Low_complexity 1 38 0 2421 81 7 0 chr4 105048737 105049047 -97279300 - AluSp SINE Alu -1 312 1 322 151 0 0 chr4 105049061 105049114 -97279233 + MIR SINE MIR 101 153 -109 542 278 78 48 chr4 105049433 105049663 -97278684 + MIR SINE MIR 15 251 -11 * 595 230 30 7 chr4 105049626 105049761 -97278586 - MIR SINE MIR 0 262 125 24 32 0 0 chr4 105050329 105050360 -97277987 + AT_rich Low_complexity Low_complexity 1 31 0 233 148 0 56 chr4 105051425 105051479 -97276868 - Charlie4 DNA MER1_type -1910 51 1 469 292 60 56 chr4 105051887 105052103 -97276244 + L2 LINE L2 3097 3313 0 26 0 0 0 chr4 105052756 105052782 -97275565 + AT_rich Low_complexity Low_complexity 1 26 0 635 356 74 44 chr4 105052896 105053891 -97274456 - L2 LINE L2 -4 3268 2243 616 214 75 27 chr4 105054514 105054701 -97273646 - L1MC4 LINE L1 -8 8034 7839 2934 271 104 21 chr4 105054702 105055883 -97272464 - L1MC4a LINE L1 -525 5639 5385 378 74 0 0 chr4 105055950 105056004 -97272343 + (TG)n Simple_repeat Simple_repeat 1 54 0 214 309 36 0 chr4 105056148 105056203 -97272144 - MIR SINE MIR -132 76 20 260 259 0 0 chr4 105056286 105056340 -97272007 + L2 LINE L2 3210 3263 -9 323 356 0 9 chr4 105057545 105057660 -97270687 + MIR SINE MIR 10 123 -139 927 188 39 14 chr4 105057860 105058067 -97270280 + L1MC1 LINE L1 6122 6333 0 270 195 98 49 chr4 105058170 105058252 -97270095 - MLT1I LTR MaLR 0 409 324 2271 93 0 0 chr4 105058253 105058543 -97269804 + AluSg SINE Alu 1 290 -20 343 286 57 21 chr4 105058610 105058750 -97269597 - MLT1J2 LTR MaLR -240 210 66 675 325 121 9 chr4 105060139 105060471 -97267876 - L3 LINE CR1 -3 1574 1206 26 0 0 0 chr4 105061848 105061874 -97266473 + AT_rich Low_complexity Low_complexity 1 26 0 428 275 154 0 chr4 105062668 105062817 -97265530 + MIR SINE MIR 20 191 -71 283 220 127 93 chr4 105063232 105063350 -97264997 - L2 LINE L2 0 3313 3192 336 324 23 0 chr4 105064239 105064374 -97263973 + MIR SINE MIR 46 185 -23 533 259 113 83 chr4 105064541 105064939 -97263408 - MLT1J LTR MaLR -2 509 100 1323 201 9 0 chr4 105065249 105065468 -97262879 - MER58A DNA MER1_type -3 221 1 1951 146 0 19 chr4 105066200 105066508 -97261839 + AluJb SINE Alu 1 302 -10 282 282 122 8 chr4 105066559 105066690 -97261657 + MIR SINE MIR 111 256 -6 1317 198 53 47 chr4 105068060 105068399 -97259948 - MER2 DNA MER2_type 0 344 4 940 206 22 0 chr4 105068601 105068781 -97259566 - MER5A DNA MER1_type -5 184 1 294 303 49 49 chr4 105069491 105069653 -97258694 - L3b LINE CR1 -240 1343 1182 514 300 67 42 chr4 105075105 105075222 -97253125 - MIR SINE MIR -6 256 143 1388 209 35 13 chr4 105075222 105075538 -97252809 - MER33 DNA MER1_type 0 324 2 514 300 67 42 chr4 105075538 105075660 -97252687 - MIR SINE MIR -119 143 11 2217 102 0 0 chr4 105075775 105076068 -97252279 - AluY SINE Alu -17 294 2 3150 185 31 5 chr4 105076127 105076738 -97251609 - L1MB8 LINE L1 -105 6073 5447 4309 221 61 24 chr4 105076759 105076774 -97251573 - L1MB8 LINE L1 -807 5339 5326 1821 154 3 29 chr4 105076774 105077080 -97251267 + AluJo SINE Alu 1 298 -14 4309 221 61 24 chr4 105077080 105078288 -97250059 - L1MB8 LINE L1 -820 5326 4089 1167 118 24 0 chr4 105078421 105078591 -97249756 + MER2 DNA MER2_type 1 174 -171 276 233 14 55 chr4 105078674 105078747 -97249600 + MER2 DNA MER2_type 267 336 -9 430 250 172 22 chr4 105078981 105079161 -97249186 + MIR SINE MIR 46 252 -10 364 225 251 42 chr4 105079380 105079571 -97248776 + MIR SINE MIR 32 262 0 187 208 79 89 chr4 105080036 105080137 -97248210 + L2 LINE L2 1863 1962 -1352 397 235 47 60 chr4 105080150 105080299 -97248048 - LTR33 LTR ERVL -7 514 368 530 303 145 4 chr4 105080359 105080587 -97247760 - LTR33 LTR ERVL -258 263 4 1181 97 77 36 chr4 105081575 105081771 -97246576 + AluSg/x SINE Alu 99 302 -10 699 256 40 40 chr4 105081920 105082147 -97246200 - MIR SINE MIR -5 257 31 304 236 45 96 chr4 105082909 105083066 -97245281 - MIR SINE MIR -77 185 37 675 217 78 28 chr4 105083116 105083296 -97245051 - MER5A DNA MER1_type 0 189 1 641 306 48 11 chr4 105083639 105083910 -97244437 + L1ME4a LINE L1 5567 5847 -274 2511 135 26 0 chr4 105083927 105084275 -97244072 + LTR18A LTR ERVL 1 357 0 25 31 0 0 chr4 105084424 105084456 -97243891 + AT_rich Low_complexity Low_complexity 1 32 0 1206 250 73 42 chr4 105084895 105085390 -97242957 + MLT1G1 LTR MaLR 12 555 0 733 102 0 0 chr4 105086402 105086500 -97241847 + MLT1D LTR MaLR 406 503 -2 21 0 0 0 chr4 105091098 105091119 -97237228 + AT_rich Low_complexity Low_complexity 1 21 0 371 245 104 43 chr4 105093271 105093434 -97234913 - MIR SINE MIR -18 244 72 450 0 0 0 chr4 105093834 105093884 -97234463 + (CA)n Simple_repeat Simple_repeat 2 51 0 181 224 383 19 chr4 105094207 105094314 -97234033 + MIR SINE MIR 19 164 -98 328 152 76 0 chr4 105095109 105095175 -97233172 + FAM SINE Alu 102 172 -7 306 267 158 50 chr4 105095185 105095305 -97233042 + MIR3 SINE MIR 43 175 -33 204 40 0 0 chr4 105095499 105095524 -97232823 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr4 105096111 105096132 -97232215 + AT_rich Low_complexity Low_complexity 1 21 0 340 284 84 45 chr4 105096633 105096788 -97231559 + MIR3 SINE MIR 5 165 -43 233 313 80 28 chr4 105097843 105098019 -97230328 - MIR SINE MIR -58 204 20 210 171 0 0 chr4 105098112 105098153 -97230194 + T-rich Low_complexity Low_complexity 4 44 0 306 0 0 0 chr4 105098643 105098677 -97229670 + (TG)n Simple_repeat Simple_repeat 2 35 0 338 260 106 88 chr4 105099973 105100246 -97228101 - L1M2 LINE L1 -5914 935 658 285 128 0 0 chr4 105103714 105103761 -97224586 + (TCC)n Simple_repeat Simple_repeat 3 49 0 260 284 0 14 chr4 105106237 105106311 -97222036 + GA-rich Low_complexity Low_complexity 3 75 0 2080 137 3 6 chr4 105106355 105106668 -97221679 - AluSx SINE Alu 0 312 1 719 265 122 38 chr4 105106701 105106939 -97221408 - MIR SINE MIR -4 258 1 332 330 60 5 chr4 105108671 105108856 -97219491 - MIR SINE MIR -20 242 48 309 281 30 44 chr4 105110216 105110351 -97217996 + L1ME3A LINE L1 5681 5813 -1995 2196 74 3 71 chr4 105110449 105110774 -97217573 + AluY SINE Alu 1 303 -8 28 0 0 0 chr4 105110974 105111002 -97217345 + AT_rich Low_complexity Low_complexity 1 28 0 491 290 58 39 chr4 105111111 105111266 -97217081 - MIR3 SINE MIR -49 159 2 1289 213 39 36 chr4 105111381 105111432 -97216915 + L1ME3A LINE L1 5817 5866 -304 2543 47 0 0 chr4 105111432 105111731 -97216616 - AluY SINE Alu -12 299 1 1289 213 39 36 chr4 105111731 105112013 -97216334 + L1ME3A LINE L1 5866 6151 -19 448 274 183 19 chr4 105112214 105112422 -97215925 + MIR SINE MIR 18 259 -3 228 338 42 28 chr4 105113117 105113259 -97215088 + L2 LINE L2 3168 3311 -2 930 302 125 36 chr4 105113268 105113874 -97214473 + L2 LINE L2 2163 2822 -492 310 366 88 34 chr4 105113960 105114255 -97214092 + L2 LINE L2 2957 3267 -46 291 274 24 12 chr4 105114301 105114385 -97213962 + L2 LINE L2 3219 3303 -10 248 231 141 0 chr4 105116882 105116960 -97211387 + MIR SINE MIR 133 221 -41 260 278 0 0 chr4 105117253 105117307 -97211040 - MIR3 SINE MIR -46 162 109 265 93 37 0 chr4 105117936 105117990 -97210357 + (CAT)n Simple_repeat Simple_repeat 1 56 0 322 341 109 44 chr4 105117998 105118039 -97210308 - MIR SINE MIR -13 249 212 204 40 0 0 chr4 105118039 105118064 -97210283 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 216 0 0 0 chr4 105118063 105118087 -97210260 + (TA)n Simple_repeat Simple_repeat 2 25 0 2255 99 0 10 chr4 105118064 105118384 -97209963 - AluY SINE Alu -17 294 1 322 341 109 44 chr4 105118384 105118396 -97209951 - MIR SINE MIR -50 212 202 2983 168 6 6 chr4 105118396 105118891 -97209456 - LTR42 LTR ERVL 0 495 1 322 341 109 44 chr4 105118891 105119069 -97209278 - MIR SINE MIR -60 202 6 2246 176 109 40 chr4 105119242 105119747 -97208600 - MLT1F LTR MaLR 0 542 3 21674 181 18 18 chr4 105120792 105127032 -97201315 + L1PA11 LINE L1 10 7612 0 2471 263 154 26 chr4 105127122 105128450 -97199897 + L2 LINE L2 1837 3313 0 203 354 20 27 chr4 105128449 105128596 -97199751 - L2 LINE L2 -600 2714 2569 * 246 319 53 44 chr4 105128895 105129008 -97199339 + L2 LINE L2 3139 3252 -20 353 294 83 42 chr4 105131130 105131307 -97197040 + MIR SINE MIR 37 219 -43 231 260 0 123 chr4 105131311 105131384 -97196963 - L2 LINE L2 0 3272 3209 226 299 60 0 chr4 105132168 105132235 -97196112 + MER91C DNA MER1_type 32 102 -38 2239 101 3 0 chr4 105132235 105132523 -97195824 + AluSp SINE Alu 1 289 -24 23 0 0 0 chr4 105132524 105132547 -97195800 + AT_rich Low_complexity Low_complexity 1 23 0 696 298 76 46 chr4 105132755 105133190 -97195157 + L2 LINE L2 2535 3043 -270 2057 118 10 3 chr4 105133217 105133506 -97194841 + AluSc SINE Alu 1 291 -18 2684 83 11 0 chr4 105134425 105134774 -97193573 + THE1A LTR MaLR 3 355 0 11728 103 2 1 chr4 105134774 105136352 -97191995 + THE1A-int LTR MaLR 1 1580 0 2610 64 20 25 chr4 105136352 105136709 -97191638 + THE1A LTR MaLR 1 355 0 1060 151 10 0 chr4 105138195 105138394 -97189953 - L1MA9 LINE L1 -5 6307 6107 1242 121 0 0 chr4 105138394 105138567 -97189780 + AluY SINE Alu 126 298 -13 2658 134 33 47 chr4 105138567 105139012 -97189335 - L1MA9 LINE L1 -194 6118 5679 1494 186 3 90 chr4 105139012 105139346 -97189001 + AluSq SINE Alu 1 305 -8 2658 134 33 47 chr4 105139346 105139414 -97188933 - L1MA9 LINE L1 -633 5679 5612 2368 258 64 31 chr4 105139411 105139763 -97188584 - L1 LINE L1 -3618 3488 3149 * 2185 122 0 0 chr4 105139763 105140087 -97188260 - AluSx SINE Alu 0 324 1 2368 258 64 31 chr4 105140087 105142333 -97186014 - L1 LINE L1 -3957 3149 1 2284 195 7 58 chr4 105143053 105143602 -97184745 + MER74A LTR ERVL 38 558 0 449 286 97 71 chr4 105143689 105144070 -97184277 + L2 LINE L2 2920 3310 -3 302 242 0 0 chr4 105144233 105144295 -97184052 + L1ME LINE L1 5766 5827 -294 234 250 32 57 chr4 105144313 105144437 -97183910 + L1ME LINE L1 5774 5894 -227 246 316 96 0 chr4 105144501 105144637 -97183710 - MIR SINE MIR -22 240 92 27 49 0 0 chr4 105144675 105144716 -97183631 + AT_rich Low_complexity Low_complexity 1 41 0 26 88 0 0 chr4 105144736 105144804 -97183543 + AT_rich Low_complexity Low_complexity 1 68 0 3504 175 28 10 chr4 105144811 105146222 -97182125 - L1PA16 LINE L1 -8 6158 4550 280 296 0 45 chr4 105147321 105147409 -97180938 + L2 LINE L2 3189 3272 0 291 271 171 7 chr4 105148016 105148156 -97180191 - MIR SINE MIR -11 251 89 217 213 43 0 chr4 105148423 105148470 -97179877 + GA-rich Low_complexity Low_complexity 2 50 0 29241 117 12 54 chr4 105148853 105149253 -97179094 + L1PA7 LINE L1 12 427 -5727 195 42 0 0 chr4 105149253 105149277 -97179070 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 29241 117 12 54 chr4 105149277 105155296 -97173051 + L1PA7 LINE L1 427 6149 -5 4494 237 79 38 chr4 105155635 105156413 -97171934 + L1M4 LINE L1 3374 4118 -2028 854 185 133 20 chr4 105156413 105156608 -97171739 + MER20 DNA MER1_type 1 217 -2 4494 237 79 38 chr4 105156608 105156723 -97171624 + L1M4 LINE L1 4118 4227 -1919 2171 120 3 0 chr4 105156723 105157041 -97171306 - AluSx SINE Alu 0 312 1 4494 237 79 38 chr4 105157041 105158035 -97170312 + L1M4 LINE L1 4227 5340 -806 1235 177 44 0 chr4 105158128 105158354 -97169993 - MER46A DNA MER2_type 0 236 1 602 287 103 44 chr4 105158513 105158942 -97169405 + HAL1 LINE L1 10 463 -2044 898 156 49 27 chr4 105158947 105159172 -97169175 + Charlie1 DNA MER1_type 1903 2132 -629 307 278 0 9 chr4 105159259 105159367 -97168980 - L1MD3 LINE L1 -1441 6554 6448 337 273 31 16 chr4 105159569 105159815 -97168532 - L1M4 LINE L1 -992 5154 4902 29 28 0 0 chr4 105159815 105159851 -97168496 + AT_rich Low_complexity Low_complexity 1 36 0 212 111 44 44 chr4 105161146 105161191 -97167156 + (CAAAG)n Simple_repeat Simple_repeat 5 49 0 306 73 0 0 chr4 105161741 105161782 -97166565 + (CA)n Simple_repeat Simple_repeat 2 42 0 2892 166 57 42 chr4 105163522 105164204 -97164143 + LTR8A LTR ERV1 35 726 -1 3115 159 22 6 chr4 105164209 105164757 -97163590 - MER89 LTR ERV1 0 559 3 1573 229 118 68 chr4 105165123 105165872 -97162475 + LTR1B LTR ERV1 1 983 -37 1532 182 136 115 chr4 105166075 105166846 -97161501 + LTR48 LTR ERV1 1 787 0 3819 85 0 8 chr4 105216908 105217403 -97110944 - MER41A LTR ERV1 -63 491 1 19244 144 105 59 chr4 105217403 105218838 -97109509 - MER41A-int LTR ERV1 -3 5943 4576 2416 112 0 0 chr4 105218838 105219150 -97109197 - AluSp SINE Alu -1 312 1 19244 144 105 59 chr4 105219150 105221654 -97106693 - MER41A-int LTR ERV1 -1370 4576 2189 1979 88 88 0 chr4 105221654 105221927 -97106420 + AluY SINE Alu 1 297 -14 19244 144 105 59 chr4 105221927 105222548 -97105799 - MER41A-int LTR ERV1 -3757 2189 1598 1728 88 176 0 chr4 105222548 105222798 -97105549 + AluSp SINE Alu 1 294 -19 19244 144 105 59 chr4 105222798 105223370 -97104977 - MER41A-int LTR ERV1 -4348 1598 484 16048 37 0 3 chr4 105223470 105226202 -97102145 + L1PA3 LINE L1 3428 6155 0 1144 175 90 15 chr4 105226216 105226484 -97101863 + MLT1D LTR MaLR 130 417 -88 1609 191 59 14 chr4 105226484 105226840 -97101507 - MSTB LTR MaLR 0 426 55 23453 45 43 2 chr4 105226949 105230073 -97098274 - L1P LINE L1 -2893 3253 4 431 177 7 99 chr4 105230075 105230216 -97098131 - MLT1E2 LTR MaLR -498 128 1 593 215 82 118 chr4 105230696 105230966 -97097381 - MIR SINE MIR 0 262 3 2809 117 27 2 chr4 105231266 105231712 -97096635 - MER41A-int LTR ERV1 -5489 457 1 5676 139 30 33 chr4 105231774 105232848 -97095499 - MER11C LTR ERVK 0 1071 1 4314 81 0 0 chr4 105232964 105233518 -97094829 - MER41A LTR ERV1 0 554 1 455 323 26 36 chr4 105233652 105233847 -97094500 - MIR SINE MIR -38 224 32 803 244 68 10 chr4 105233970 105234175 -97094172 - MER20 DNA MER1_type -2 217 1 667 270 20 31 chr4 105234542 105234738 -97093609 + MIR3 SINE MIR 13 206 -2 626 283 68 22 chr4 105234740 105235062 -97093285 - MER46C DNA MER2_type -1 337 1 21 0 0 0 chr4 105235167 105235188 -97093159 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4 105235951 105235971 -97092376 + (GA)n Simple_repeat Simple_repeat 1 20 0 394 323 82 39 chr4 105236144 105236226 -97092121 - L2 LINE L2 -33 3280 3203 1934 128 3 27 chr4 105236226 105236554 -97091793 - L1MA5 LINE L1 -9 6291 5972 394 323 82 39 chr4 105236554 105236753 -97091594 - L2 LINE L2 -110 3203 2987 1767 223 134 11 chr4 105237825 105238301 -97090046 - MLT1F LTR MaLR -3 539 5 194 308 206 19 chr4 105238600 105238707 -97089640 - L2 LINE L2 -1 3312 3186 574 133 7 73 chr4 105239669 105239820 -97088527 + AluSc SINE Alu 1 141 -168 2389 101 3 0 chr4 105240043 105240349 -97087998 + AluSc SINE Alu 3 309 0 599 306 16 11 chr4 105240497 105240680 -97087667 - MER5A DNA MER1_type 0 189 6 664 298 88 17 chr4 105240701 105240939 -97087408 + MIR SINE MIR 7 261 -1 251 330 169 8 chr4 105241511 105241629 -97086718 - MIR3 SINE MIR -60 148 12 1987 125 4 4 chr4 105241659 105241987 -97086360 + AluSg SINE Alu 1 328 0 344 303 135 14 chr4 105242330 105242538 -97085809 - MIR SINE MIR -12 250 18 219 319 0 0 chr4 105242708 105242777 -97085570 + L2 LINE L2 2456 2524 -790 817 222 79 34 chr4 105242878 105243317 -97085030 + MLT1E LTR MaLR 17 565 -2 224 336 28 9 chr4 105243361 105243468 -97084879 + L2 LINE L2 2682 2790 -524 1951 150 33 41 chr4 105243512 105243878 -97084469 - THE1B LTR MaLR -1 363 1 33 25 0 0 chr4 105244532 105244572 -97083775 + AT_rich Low_complexity Low_complexity 1 40 0 225 0 0 0 chr4 105244595 105244620 -97083727 + (TTCTCC)n Simple_repeat Simple_repeat 5 29 0 1777 166 39 0 chr4 105244624 105244908 -97083439 - AluJb SINE Alu -6 306 12 1158 210 198 29 chr4 105245469 105245888 -97082459 + L1ME3A LINE L1 5323 5812 -358 817 249 17 41 chr4 105245899 105245940 -97082407 + L1ME3A LINE L1 5862 5902 -268 1757 196 47 18 chr4 105245940 105246323 -97082024 - MSTD LTR MaLR 0 396 3 817 249 17 41 chr4 105246323 105246574 -97081773 + L1ME3A LINE L1 5902 6147 -23 856 185 15 45 chr4 105246674 105246874 -97081473 + MLT1A1 LTR MaLR 1 194 -171 843 237 5 5 chr4 105246891 105247077 -97081270 + MLT1A1 LTR MaLR 170 355 -10 220 200 20 20 chr4 105247108 105247158 -97081189 + L2 LINE L2 3188 3237 -76 739 281 14 28 chr4 105247370 105247587 -97080760 + MIR SINE MIR 49 262 0 453 269 0 50 chr4 105247714 105247855 -97080492 + MIR3 SINE MIR 67 200 -8 225 188 35 35 chr4 105248077 105248162 -97080185 + (CTAGT)n Simple_repeat Simple_repeat 4 88 0 452 325 53 13 chr4 105249349 105249651 -97078696 + L1ME4a LINE L1 5554 5867 -254 404 235 176 77 chr4 105249699 105249731 -97078616 - MIR SINE MIR -13 249 222 1995 163 6 6 chr4 105249731 105250075 -97078272 - MER2 DNA MER2_type 0 344 1 404 235 176 77 chr4 105250075 105250141 -97078206 - MIR SINE MIR -40 222 164 6732 117 58 19 chr4 105250141 105250580 -97077767 - Tigger3b DNA MER2_type -1797 1231 811 2080 114 0 0 chr4 105250580 105250853 -97077494 - AluSg SINE Alu -2 308 36 6732 117 58 19 chr4 105250853 105251597 -97076750 - Tigger3b DNA MER2_type -2217 811 2 404 235 176 77 chr4 105251597 105251667 -97076680 - MIR SINE MIR -98 164 63 341 313 65 96 chr4 105253129 105253392 -97074955 + MIR SINE MIR 6 257 -5 199 247 62 99 chr4 105254041 105254122 -97074225 - L2 LINE L2 -10 3262 3185 255 187 40 13 chr4 105255435 105255510 -97072837 + MER116 DNA Mariner 1 77 -3 190 420 0 0 chr4 105255551 105255651 -97072696 - L2 LINE L2 -527 2787 2688 406 328 113 21 chr4 105255731 105256066 -97072281 - L2 LINE L2 -704 2610 2245 2055 112 0 14 chr4 105256175 105256471 -97071876 - AluSc SINE Alu -17 292 1 410 263 0 0 chr4 105256712 105256807 -97071540 + MER58A DNA MER1_type 2 96 -11 1937 143 24 0 chr4 105256849 105257143 -97071204 - AluSx SINE Alu -11 301 1 468 82 0 0 chr4 105257219 105257292 -97071055 - L1MA6 LINE L1 0 6300 6228 537 227 30 0 chr4 105257292 105257424 -97070923 + MER58A DNA MER1_type 88 223 -1 283 306 186 8 chr4 105257424 105257548 -97070799 - MIR3 SINE MIR -47 161 16 1810 191 3 0 chr4 105257811 105258109 -97070238 + AluJb SINE Alu 1 299 -13 257 183 0 70 chr4 105259251 105259322 -97069025 - MIR SINE MIR -10 252 187 5654 76 7 0 chr4 105259653 105260405 -97067942 - L1PA8 LINE L1 -2 6170 5414 802 92 0 0 chr4 105260406 105260526 -97067821 - L1PA8 LINE L1 -921 5225 5106 368 261 8 67 chr4 105261136 105261255 -97067092 - L2 LINE L2 0 3313 3202 456 262 16 8 chr4 105261328 105261454 -97066893 - MLT1E LTR MaLR -466 127 1 291 214 27 125 chr4 105261459 105261504 -97066843 + MIR SINE MIR 162 210 -52 2146 134 3 0 chr4 105261504 105261810 -97066537 + AluSx SINE Alu 1 307 -5 291 214 27 125 chr4 105261810 105261876 -97066471 + MIR SINE MIR 210 262 0 198 143 0 0 chr4 105263200 105263235 -97065112 + (CATA)n Simple_repeat Simple_repeat 1 35 0 1507 145 108 40 chr4 105263293 105263644 -97064703 + THE1C LTR MaLR 1 375 0 9784 175 23 25 chr4 105263947 105266496 -97061851 + L1PA10 LINE L1 10 2561 -3922 2159 122 3 0 chr4 105266496 105266784 -97061563 + AluSx SINE Alu 5 293 -19 9784 175 23 25 chr4 105266784 105269420 -97058927 + L1PA10 LINE L1 2561 5363 -1120 2130 94 4 0 chr4 105269420 105269697 -97058650 + AluY SINE Alu 18 295 -16 9784 175 23 25 chr4 105269697 105270815 -97057532 + L1PA10 LINE L1 5363 6481 -2 458 196 0 11 chr4 105270891 105270983 -97057364 + Charlie4 DNA MER1_type 1818 1908 -53 478 261 9 0 chr4 105271098 105271213 -97057134 - Charlie8 DNA MER1_type -2227 190 75 1789 182 3 0 chr4 105271599 105271901 -97056446 + AluSx SINE Alu 1 303 -9 335 293 51 19 chr4 105272339 105272496 -97055851 - L1MC4a LINE L1 -1963 5845 5684 400 167 0 0 chr4 105272496 105272574 -97055773 + MER34C LTR ERV1 11 78 -464 1171 101 0 0 chr4 105272578 105272726 -97055621 + AluSq SINE Alu 116 263 -50 1467 203 107 40 chr4 105272732 105273181 -97055166 + MER34B LTR ERV1 87 565 0 312 334 113 34 chr4 105273181 105273534 -97054813 - L1MC4a LINE L1 -2121 5687 5307 311 304 10 0 chr4 105273597 105273699 -97054648 + LTR48B LTR ERV1 1 103 -541 * 1144 223 54 71 chr4 105273670 105274125 -97054222 + MER39 LTR ERV1 260 565 0 1143 268 71 49 chr4 105274513 105274717 -97053630 + L2 LINE L2 2450 2648 -665 1881 178 10 79 chr4 105274717 105275133 -97053214 + MLT1B LTR MaLR 1 387 -3 1143 268 71 49 chr4 105275133 105275763 -97052584 + L2 LINE L2 2648 3313 0 269 256 0 4 chr4 105275839 105275943 -97052404 - MER52A LTR ERV1 -4 1751 1601 690 285 100 90 chr4 105275949 105276746 -97051601 - MER52A LTR ERV1 -285 1470 666 2990 165 56 59 chr4 105276819 105277510 -97050837 + LTR8A LTR ERV1 1 689 -38 2397 86 0 0 chr4 105277533 105277837 -97050510 - AluY SINE Alu -7 304 1 21 71 0 0 chr4 105278057 105278099 -97050248 + AT_rich Low_complexity Low_complexity 1 42 0 344 193 0 0 chr4 105278227 105278306 -97050041 - AluJ/FRAM SINE Alu 0 304 226 807 203 7 0 chr4 105278386 105278534 -97049813 + AluJo SINE Alu 1 149 -163 538 120 0 0 chr4 105278534 105278609 -97049738 + LTR8 LTR ERV1 3 77 -614 5143 105 23 4 chr4 105278609 105279647 -97048700 - L1MA3 LINE L1 -132 7441 3253 275 167 0 0 chr4 105279647 105279695 -97048652 + L1M1 LINE L1 3017 3064 -4501 * 3774 125 10 14 chr4 105279687 105280280 -97048067 - L1M1 LINE L1 -5119 2446 1856 205 357 30 30 chr4 105280821 105280989 -97047358 - L2 LINE L2 -178 3094 2927 2153 141 0 0 chr4 105282033 105282332 -97046015 + AluSx SINE Alu 1 299 -13 42555 56 8 1 chr4 105283018 105289130 -97039217 - L1PA5 LINE L1 -1 6153 1 231 196 0 0 chr4 105290186 105290232 -97038115 + (TG)n Simple_repeat Simple_repeat 1 46 0 2854 102 64 79 chr4 105291455 105292077 -97036270 - MER4B LTR ERV1 0 779 4 186 344 16 47 chr4 105292460 105292588 -97035759 + MIR SINE MIR 107 230 -32 2220 225 45 26 chr4 105293057 105293585 -97034762 - MER34 LTR ERV1 0 542 5 518 208 221 13 chr4 105294798 105294952 -97033395 + MER5A DNA MER1_type 4 189 0 1309 173 63 116 chr4 105295059 105295360 -97032987 + AluJo SINE Alu 1 285 -17 299 25 25 0 chr4 105295360 105295400 -97032947 + (CAAGG)n Simple_repeat Simple_repeat 2 42 0 1525 190 7 29 chr4 105296018 105296328 -97032019 - AluJo SINE Alu -9 303 1 230 330 46 18 chr4 105297492 105297601 -97030746 - MER5B DNA MER1_type -2 176 65 746 187 0 8 chr4 105297914 105298037 -97030310 + FLAM_C SINE Alu 3 124 -9 255 335 104 52 chr4 105299216 105299389 -97028958 + MIR3 SINE MIR 11 192 -16 276 341 0 0 chr4 105300261 105300343 -97028004 - L3 LINE CR1 -3 1574 1493 1776 186 0 3 chr4 105300417 105300729 -97027618 + AluJb SINE Alu 1 311 -1 439 239 0 0 chr4 105300751 105300843 -97027504 + MER97a DNA MER1_type? 88 179 -715 1858 172 9 12 chr4 105300879 105301205 -97027142 + MLT1A1 LTR MaLR 10 334 -31 259 265 66 46 chr4 105301612 105301763 -97026584 + LTR50 LTR ERVL 1 154 -641 207 0 0 0 chr4 105301783 105301806 -97026541 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 235 245 0 0 chr4 105301949 105301998 -97026349 + LTR33A LTR ERVL 475 523 0 501 189 156 0 chr4 105302784 105302906 -97025441 - MER20 DNA MER1_type -18 201 61 326 150 17 0 chr4 105302965 105303022 -97025325 - MLT2D LTR ERVL 0 397 349 396 111 0 0 chr4 105303028 105303100 -97025247 + (TG)n Simple_repeat Simple_repeat 2 73 0 1387 203 16 98 chr4 105303109 105303488 -97024859 - MLT2D LTR ERVL -64 350 3 204 164 91 55 chr4 105303490 105303545 -97024802 - L2 LINE L2 -66 3206 3150 1770 226 47 33 chr4 105303569 105303592 -97024755 - MLT1G LTR MaLR 0 590 569 2496 102 28 25 chr4 105303592 105303955 -97024392 - THE1B LTR MaLR 0 364 1 1770 226 47 33 chr4 105303955 105304500 -97023847 - MLT1G LTR MaLR -21 569 42 454 93 23 0 chr4 105304522 105304608 -97023739 + (TCTA)n Simple_repeat Simple_repeat 3 90 0 538 277 44 6 chr4 105304680 105304839 -97023508 + L1MB7 LINE L1 6011 6175 -9 2399 103 0 0 chr4 105304913 105305223 -97023124 - AluY SINE Alu -1 310 1 249 139 0 0 chr4 105306043 105306086 -97022261 + (GA)n Simple_repeat Simple_repeat 2 44 0 1633 131 127 4 chr4 105306299 105306567 -97021780 + AluSx SINE Alu 1 301 -11 390 329 0 15 chr4 105308222 105308359 -97019988 - MIR SINE MIR -79 183 49 367 240 219 20 chr4 105309182 105309328 -97019019 + MER5B DNA MER1_type 4 178 0 621 211 14 14 chr4 105309464 105309611 -97018736 - L1MB8 LINE L1 -4 6174 6028 441 202 0 32 chr4 105309682 105309776 -97018571 + MER63 DNA MER1_type 675 765 -71 1339 219 79 6 chr4 105311025 105311340 -97017007 - MER58B DNA MER1_type 0 341 4 373 327 83 15 chr4 105311555 105311760 -97016587 - MIR SINE MIR -13 249 31 588 272 88 35 chr4 105311818 105312046 -97016301 - MIR SINE MIR 0 262 23 403 221 105 79 chr4 105313405 105313672 -97014675 + L1MC4 LINE L1 7767 8040 -2 375 285 77 39 chr4 105313681 105313888 -97014459 - L1ME4a LINE L1 -14 6107 5893 211 273 0 45 chr4 105314487 105314553 -97013794 - MIR SINE MIR -119 143 81 208 319 110 11 chr4 105314569 105314660 -97013687 + L2 LINE L2 3157 3256 -16 197 300 43 14 chr4 105314669 105314739 -97013608 - MIR3 SINE MIR -127 81 10 218 208 21 97 chr4 105315549 105315693 -97012654 + (TCTCTG)n Simple_repeat Simple_repeat 4 136 0 337 274 81 16 chr4 105316499 105316623 -97011724 + MER117 DNA MER1_type 66 197 0 256 335 83 24 chr4 105316981 105317235 -97011112 + L2 LINE L2 2812 3080 -192 2380 63 33 0 chr4 105317627 105317928 -97010419 + AluY SINE Alu 1 311 0 576 335 136 36 chr4 105317947 105318478 -97009869 + L3 LINE CR1 891 1474 -103 348 93 130 0 chr4 105318519 105318573 -97009774 - MER5A DNA MER1_type -120 69 9 430 260 80 68 chr4 105318586 105318836 -97009511 - MER112 DNA MER1_type -6 254 2 2302 114 0 0 chr4 105319563 105319861 -97008486 + AluSq SINE Alu 1 298 -15 1172 162 152 8 chr4 105320017 105320411 -97007936 + MER69 DNA AcHobo 2064 2514 -12 2050 146 0 0 chr4 105320466 105320761 -97007586 + AluSx SINE Alu 1 295 -17 196 289 72 54 chr4 105320887 105321053 -97007294 + L2 LINE L2 2788 2956 -358 360 64 0 0 chr4 105321121 105321168 -97007179 + (TC)n Simple_repeat Simple_repeat 1 47 0 367 247 24 57 chr4 105321665 105321820 -97006527 - MER20B DNA MER1_type -23 196 43 547 289 99 23 chr4 105321867 105322220 -97006127 - L1ME4a LINE L1 -2035 5773 5394 561 335 20 16 chr4 105324217 105324462 -97003885 - MIR SINE MIR -2 260 15 21 0 0 0 chr4 105324552 105324573 -97003774 + AT_rich Low_complexity Low_complexity 1 21 0 1520 158 55 99 chr4 105325086 105325378 -97002969 - MLT1B LTR MaLR 0 390 119 2240 112 3 0 chr4 105325378 105325674 -97002673 - AluSq SINE Alu -16 297 1 1520 158 55 99 chr4 105325674 105325785 -97002562 - MLT1B LTR MaLR -271 119 5 382 313 78 30 chr4 105326300 105326466 -97001881 - MIR3 SINE MIR -19 189 16 1823 192 90 66 chr4 105327099 105327708 -97000639 - MLT1E3 LTR MaLR 0 624 1 22 0 0 0 chr4 105327847 105327869 -97000478 + AT_rich Low_complexity Low_complexity 1 22 0 2689 150 40 2 chr4 105328009 105328461 -96999886 - MER1A DNA MER1_type 0 529 61 1827 121 131 0 chr4 105328816 105329114 -96999233 - MER1B DNA MER1_type 0 337 1 355 365 63 36 chr4 105329206 105329455 -96998892 - L2 LINE L2 -146 3126 2871 680 229 34 46 chr4 105329455 105329630 -96998717 + MER5A DNA MER1_type 1 173 -16 410 108 12 0 chr4 105329714 105329797 -96998550 + (TA)n Simple_repeat Simple_repeat 2 85 0 2076 126 0 0 chr4 105330145 105330431 -96997916 + AluSx SINE Alu 1 286 -26 26 30 0 0 chr4 105330434 105330467 -96997880 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4 105330608 105330636 -96997711 + AT_rich Low_complexity Low_complexity 1 28 0 245 329 18 59 chr4 105332187 105332357 -96995990 - L3b LINE CR1 -305 1278 1116 960 27 0 0 chr4 105333210 105333322 -96995025 - AluY SINE Alu -5 306 195 424 236 43 62 chr4 105334047 105334208 -96994139 + L2 LINE L2 3108 3265 -48 1421 135 142 21 chr4 105334416 105334698 -96993649 - MER61A LTR ERV1 0 343 28 594 282 98 26 chr4 105335417 105335651 -96992696 - MIR SINE MIR -6 256 6 288 275 77 22 chr4 105336408 105336499 -96991848 - MIR3 SINE MIR -6 202 107 603 331 57 32 chr4 105336657 105336905 -96991442 + MIR SINE MIR 5 258 -4 187 333 119 8 chr4 105337440 105337566 -96990781 - L2 LINE L2 -5 3308 3169 2261 72 4 0 chr4 105338165 105338476 -96989871 - AluSc SINE Alu 0 312 1 2238 87 0 13 chr4 105338596 105338894 -96989453 - AluSc SINE Alu -15 294 1 189 74 0 0 chr4 105339740 105339767 -96988580 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 180 337 53 32 chr4 105339767 105339852 -96988495 - L2 LINE L2 -28 3244 3155 1812 193 59 45 chr4 105340000 105340493 -96987854 + MLT1D LTR MaLR 1 500 -5 2228 105 0 0 chr4 105340493 105340787 -96987560 + AluSx SINE Alu 1 294 -18 2250 85 3 50 chr4 105341900 105342218 -96986129 - AluSc SINE Alu -6 303 1 705 254 93 41 chr4 105342320 105342611 -96985736 + L2 LINE L2 3004 3309 -4 230 343 85 76 chr4 105343114 105343455 -96984892 + L2 LINE L2 2913 3256 -16 1817 152 25 14 chr4 105343905 105344188 -96984159 + AluJb SINE Alu 1 286 -26 26 30 0 0 chr4 105344346 105344379 -96983968 + AT_rich Low_complexity Low_complexity 1 33 0 1027 303 131 22 chr4 105346443 105346902 -96981445 - L2 LINE L2 0 3313 2805 1537 247 51 24 chr4 105347004 105347454 -96980893 - LTR40b LTR ERVL 0 462 1 344 264 185 28 chr4 105347575 105347753 -96980594 - L2 LINE L2 -805 2509 2304 451 290 91 13 chr4 105348003 105348067 -96980280 - L1ME4a LINE L1 -121 6000 5942 315 0 0 0 chr4 105348067 105348102 -96980245 + (CA)n Simple_repeat Simple_repeat 2 36 0 451 290 91 13 chr4 105348102 105348268 -96980079 - L1ME4a LINE L1 -179 5942 5752 268 125 18 0 chr4 105348281 105348337 -96980010 - L1MC4 LINE L1 0 8042 7986 3777 230 101 21 chr4 105348342 105349262 -96979085 - L1MC4 LINE L1 -143 7899 6841 1632 151 3 78 chr4 105349262 105349581 -96978766 - AluJb SINE Alu -17 295 1 3777 230 101 21 chr4 105349581 105349980 -96978367 - L1MC4 LINE L1 -1201 6841 6475 413 236 28 0 chr4 105351488 105351594 -96976753 - MER103 DNA DNA -44 122 14 253 316 123 9 chr4 105352842 105352956 -96975391 + MIR SINE MIR 118 244 -18 21 36 0 0 chr4 105353182 105353210 -96975137 + AT_rich Low_complexity Low_complexity 1 28 0 213 65 0 0 chr4 105353335 105353366 -96974981 + (TG)n Simple_repeat Simple_repeat 2 32 0 230 163 82 0 chr4 105354545 105354594 -96973753 + MER91B DNA MER1_type 78 130 -60 568 265 51 10 chr4 105354690 105354948 -96973399 - L1MC4 LINE L1 -54 7948 7638 238 280 0 0 chr4 105354950 105355000 -96973347 + MER91B DNA MER1_type 133 182 -8 512 0 80 0 chr4 105356266 105356354 -96971993 + (TA)n Simple_repeat Simple_repeat 2 96 0 2230 131 0 0 chr4 105357123 105357435 -96970912 - AluSx SINE Alu 0 312 1 1289 225 26 0 chr4 105357792 105358103 -96970244 + L1ME LINE L1 5428 5746 -416 2119 123 0 0 chr4 105360013 105360335 -96968012 + AluSx SINE Alu 1 322 0 24 0 0 0 chr4 105360521 105360545 -96967802 + AT_rich Low_complexity Low_complexity 1 24 0 237 132 0 0 chr4 105360696 105360734 -96967613 + (TA)n Simple_repeat Simple_repeat 2 39 0 301 218 0 0 chr4 105361213 105361268 -96967079 + Tigger5 DNA MER2_type 1 55 -2268 489 200 0 0 chr4 105361275 105361365 -96966982 + Tigger5 DNA MER2_type 2234 2323 0 987 180 138 24 chr4 105361736 105362025 -96966322 - MER5C DNA MER1_type 0 324 3 384 162 14 0 chr4 105362543 105362617 -96965730 + ERVL-C1 LTR ERVL 2111 2185 -3579 13272 117 59 52 chr4 105362618 105363416 -96964931 - Tigger1 DNA MER2_type 0 2418 1627 1829 160 4 0 chr4 105363416 105363720 -96964627 - AluSg SINE Alu 0 305 1 13272 117 59 52 chr4 105363720 105364753 -96963594 - Tigger1 DNA MER2_type -791 1627 563 2209 81 0 52 chr4 105364753 105365062 -96963285 + AluY SINE Alu 2 294 -17 13272 117 59 52 chr4 105365062 105365629 -96962718 - Tigger1 DNA MER2_type -1855 563 1 4845 153 14 11 chr4 105366038 105366889 -96961458 + ERVL-C1 LTR ERVL 2185 3038 -2726 3874 194 30 6 chr4 105366901 105367701 -96960646 + ERVL-C1 LTR ERVL 4568 5386 -378 210 213 21 0 chr4 105367701 105367748 -96960599 + (TA)n Simple_repeat Simple_repeat 1 48 0 596 180 148 99 chr4 105367759 105368006 -96960341 + ERVL-C1 LTR ERVL 5460 5724 -40 2261 115 0 0 chr4 105368006 105368311 -96960036 + AluSx SINE Alu 1 305 -7 596 180 148 99 chr4 105368311 105368346 -96960001 + ERVL-C1 LTR ERVL 5724 5756 -8 1683 203 40 13 chr4 105368346 105368725 -96959622 + MLT2C1 LTR ERVL 1 389 -8 23 33 0 0 chr4 105368766 105368796 -96959551 + AT_rich Low_complexity Low_complexity 1 30 0 272 254 46 23 chr4 105368970 105369100 -96959247 - L1MC4a LINE L1 -1867 5941 5809 399 241 80 0 chr4 105369129 105369241 -96959106 + MER94 DNA DNA 14 134 0 531 258 52 31 chr4 105369250 105369479 -96958868 - L1MC4a LINE L1 -372 5749 5516 234 235 148 0 chr4 105369807 105369922 -96958425 - L1P LINE L1 -1906 4240 4109 874 174 27 49 chr4 105369988 105370172 -96958175 - Tigger3(Golem) DNA MER2_type 0 3029 2850 458 152 150 63 chr4 105370156 105370425 -96957922 - MER7A DNA MER2_type -98 248 1 * 1820 167 0 16 chr4 105370676 105370988 -96957359 + AluSx SINE Alu 1 307 -5 212 200 100 0 chr4 105371014 105371074 -96957273 + MER91C DNA MER1_type 33 98 -42 * 215 185 0 93 chr4 105371069 105371123 -96957224 - MER91C DNA MER1_type -59 81 33 505 119 48 0 chr4 105371321 105371405 -96956942 - AluSg/x SINE Alu -9 303 216 23 33 0 0 chr4 105371570 105371600 -96956747 + AT_rich Low_complexity Low_complexity 1 30 0 1213 187 78 0 chr4 105372573 105372792 -96955555 - MER46A DNA MER2_type 0 236 1 28 48 0 0 chr4 105373136 105373178 -96955169 + AT_rich Low_complexity Low_complexity 1 42 0 332 264 0 11 chr4 105373553 105373640 -96954707 - MIR3 SINE MIR -3 205 120 265 389 42 18 chr4 105374172 105374339 -96954008 - MIR SINE MIR -60 202 32 26 0 0 0 chr4 105374368 105374394 -96953953 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr4 105375017 105375045 -96953302 + AT_rich Low_complexity Low_complexity 1 28 0 2095 130 0 3 chr4 105375049 105375350 -96952997 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr4 105376261 105376282 -96952065 + AT_rich Low_complexity Low_complexity 1 21 0 255 241 164 69 chr4 105376553 105376669 -96951678 - MIR3 SINE MIR -11 197 71 225 310 58 23 chr4 105376664 105376751 -96951596 + MIR3 SINE MIR 8 97 -111 * 216 390 11 0 chr4 105376939 105377034 -96951313 + MIR3 SINE MIR 111 206 -2 180 176 0 0 chr4 105377283 105377317 -96951030 + (TA)n Simple_repeat Simple_repeat 1 34 0 44 35 0 0 chr4 105377738 105377796 -96950551 + AT_rich Low_complexity Low_complexity 1 58 0 248 327 109 38 chr4 105378064 105378403 -96949944 - L2 LINE L2 -5 3308 2946 445 270 126 4 chr4 105378459 105378689 -96949658 + MIR SINE MIR 3 260 -2 1955 120 31 3 chr4 105379289 105379580 -96948767 + AluSx SINE Alu 1 299 -13 472 262 59 55 chr4 105379688 105379890 -96948457 + L1MC4a LINE L1 5702 5904 -1904 21 57 0 0 chr4 105380399 105380434 -96947913 + AT_rich Low_complexity Low_complexity 1 35 0 2980 167 70 46 chr4 105381639 105382308 -96946039 + Tigger6a DNA MER2_type 1 685 -398 291 299 15 52 chr4 105382548 105382682 -96945665 + MIR SINE MIR 74 202 -60 2421 74 0 3 chr4 105383051 105383350 -96944997 - AluSq SINE Alu -15 298 1 1164 173 23 14 chr4 105383455 105383675 -96944672 - AluJo SINE Alu -82 230 9 241 167 30 15 chr4 105384899 105384965 -96943382 + (CCCCG)n Simple_repeat Simple_repeat 5 71 0 234 257 10 89 chr4 105385454 105385471 -96942876 + L2 LINE L2 1698 1715 -1599 1389 127 76 29 chr4 105385471 105385747 -96942600 + AluJo SINE Alu 3 291 -21 234 257 10 89 chr4 105385747 105385830 -96942517 + L2 LINE L2 1715 1790 -1524 530 303 135 38 chr4 105385851 105386574 -96941773 + L2 LINE L2 2479 3313 0 183 129 0 0 chr4 105387572 105387603 -96940744 + (TA)n Simple_repeat Simple_repeat 1 31 0 22 0 0 0 chr4 105391930 105391952 -96936395 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 105391968 105391998 -96936349 + AT_rich Low_complexity Low_complexity 1 30 0 191 304 43 14 chr4 105392296 105392365 -96935982 - L3b LINE CR1 -70 1513 1443 202 325 150 3 chr4 105392472 105392577 -96935770 - MIR SINE MIR -72 136 20 817 149 25 56 chr4 105392595 105392756 -96935591 - MER20 DNA MER1_type -32 187 32 266 227 204 11 chr4 105392996 105393084 -96935263 - MIR SINE MIR -1 261 157 881 227 130 5 chr4 105393089 105393322 -96935025 + MIR SINE MIR 13 262 0 340 256 186 8 chr4 105393334 105393463 -96934884 - MIR SINE MIR -110 152 1 484 213 63 16 chr4 105393728 105393855 -96934492 + MER104 DNA Tc2 48 180 0 193 281 62 16 chr4 105393888 105393952 -96934395 - MIR SINE MIR 0 262 196 867 135 0 35 chr4 105394381 105394522 -96933825 + Tigger4(Zombi) DNA MER2_type 1 136 -2595 * 3299 101 72 23 chr4 105394499 105395025 -96933322 + Tigger4(Zombi) DNA MER2_type 2179 2730 -1 215 308 92 15 chr4 105396433 105396498 -96931849 - MIR3 SINE MIR -125 83 14 415 310 146 34 chr4 105396659 105396898 -96931449 - L3 LINE CR1 -2 1575 1310 21 36 0 0 chr4 105397058 105397086 -96931261 + AT_rich Low_complexity Low_complexity 1 28 0 403 284 25 31 chr4 105397316 105397478 -96930869 - L1MC4a LINE L1 -1919 5889 5729 1716 156 3 39 chr4 105397760 105398068 -96930279 + AluJo SINE Alu 2 298 -14 634 154 86 44 chr4 105398273 105398468 -96929879 + MER6 DNA MER2_type -65 865 0 322 286 0 0 chr4 105399651 105399721 -96928626 - MIR SINE MIR -107 155 86 340 298 58 10 chr4 105399836 105399940 -96928407 + L2 LINE L2 3187 3295 -18 5757 218 37 34 chr4 105401231 105402853 -96925494 - L1MD1 LINE L1 -59 6577 4935 2199 108 3 0 chr4 105402853 105403149 -96925198 - AluSp SINE Alu -16 297 1 5757 218 37 34 chr4 105403149 105404215 -96924132 - L1MD1 LINE L1 -1701 4935 3874 2273 136 109 3 chr4 105404228 105404603 -96923744 - MSTB2 LTR MaLR 0 457 43 3347 41 2 0 chr4 105404606 105405019 -96923328 + L1PA5 LINE L1 5733 6146 -8 180 97 0 0 chr4 105405026 105405057 -96923290 + (TAAAAA)n Simple_repeat Simple_repeat 6 36 0 8024 192 77 114 chr4 105405082 105405578 -96922769 - L1MD1 LINE L1 -2672 3868 3356 1772 87 0 0 chr4 105405578 105405807 -96922540 - AluY SINE Alu -82 229 1 8024 192 77 114 chr4 105405807 105406517 -96921830 - L1MD1 LINE L1 -3184 3356 2622 1698 174 7 10 chr4 105406517 105406805 -96921542 - AluJb SINE Alu -20 292 6 8024 192 77 114 chr4 105406805 105407223 -96921124 - L1MD1 LINE L1 -3918 2622 2190 2036 90 14 11 chr4 105407223 105407524 -96920823 + AluSc SINE Alu 1 302 0 8024 192 77 114 chr4 105407524 105407660 -96920687 - L1MD1 LINE L1 -4350 2190 2051 989 178 30 3 chr4 105407660 105407928 -96920419 - MLT1A1 LTR MaLR 0 365 15 8024 192 77 114 chr4 105407928 105409673 -96918674 - L1MD1 LINE L1 -4489 2051 225 2062 116 0 7 chr4 105409673 105409984 -96918363 + AluSg1 SINE Alu 1 309 0 8024 192 77 114 chr4 105409984 105410185 -96918162 - L1MD1 LINE L1 -6315 225 18 206 305 114 67 chr4 105410412 105410517 -96917830 + MIR SINE MIR 81 190 -72 23 0 0 0 chr4 105410950 105410973 -96917374 + AT_rich Low_complexity Low_complexity 1 23 0 27 62 0 0 chr4 105411970 105412018 -96916329 + AT_rich Low_complexity Low_complexity 1 48 0 22 70 0 0 chr4 105412767 105412810 -96915537 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr4 105412906 105412934 -96915413 + AT_rich Low_complexity Low_complexity 1 28 0 711 204 0 22 chr4 105414071 105414208 -96914139 - AluJo SINE Alu -178 134 1 280 282 35 12 chr4 105414683 105414768 -96913579 + L2 LINE L2 3184 3270 -2 364 305 25 8 chr4 105414945 105415063 -96913284 - L2 LINE L2 -1 3312 3193 1002 196 45 97 chr4 105415142 105415410 -96912937 + MER46C DNA MER2_type 1 248 -90 1386 214 74 19 chr4 105415410 105415733 -96912614 + MER2 DNA MER2_type 3 343 -1 1002 196 45 97 chr4 105415733 105415816 -96912531 + MER46C DNA MER2_type 248 334 -4 330 298 143 1 chr4 105415821 105415978 -96912369 - MIR SINE MIR -42 220 43 * 633 323 70 8 chr4 105415966 105416223 -96912124 - L2 LINE L2 0 3313 3041 323 361 74 13 chr4 105418526 105418756 -96909591 + L2 LINE L2 1244 1487 -1827 22 0 0 0 chr4 105419113 105419135 -96909212 + AT_rich Low_complexity Low_complexity 1 22 0 2016 125 0 0 chr4 105419457 105419760 -96908587 - AluSx SINE Alu 0 305 3 499 365 95 11 chr4 105421251 105421629 -96906718 + L1MEc LINE L1 1408 1817 -4579 313 233 23 101 chr4 105421652 105421844 -96906503 + L1MC5 LINE L1 7755 7935 -26 277 267 5 51 chr4 105422128 105422323 -96906024 + L1MEc LINE L1 2858 3043 -3172 3763 187 47 30 chr4 105422325 105423542 -96904805 + L1MB8 LINE L1 4921 6168 -10 1964 106 65 20 chr4 105423674 105423967 -96904380 - AluSq SINE Alu -7 306 1 27 0 0 0 chr4 105424258 105424285 -96904062 + AT_rich Low_complexity Low_complexity 1 27 0 336 270 175 66 chr4 105424802 105424882 -96903465 + HAL1b LINE L1 64 134 -1214 2261 110 13 0 chr4 105424882 105425190 -96903157 + AluSx SINE Alu 1 312 0 336 270 175 66 chr4 105425190 105425589 -96902758 + HAL1b LINE L1 134 329 -1019 343 266 118 34 chr4 105425592 105425941 -96902406 + HAL1b LINE L1 365 742 -606 2087 120 21 0 chr4 105426156 105426447 -96901900 + AluSx SINE Alu 1 297 -15 3142 210 112 83 chr4 105426602 105427406 -96900941 + L1MC4 LINE L1 6489 7268 -774 2268 77 3 3 chr4 105427406 105427692 -96900655 + AluY SINE Alu 2 287 -24 3142 210 112 83 chr4 105427692 105427813 -96900534 + L1MC4 LINE L1 7268 7384 -658 1808 158 21 3 chr4 105427813 105428097 -96900250 + AluJb SINE Alu 1 289 -23 3142 210 112 83 chr4 105428097 105428169 -96900178 + L1MC4 LINE L1 7384 7452 -590 930 107 0 50 chr4 105428169 105428309 -96900038 + FLAM_C SINE Alu 1 133 0 3142 210 112 83 chr4 105428309 105428346 -96900001 + L1MC4 LINE L1 7452 7486 -556 1457 89 48 97 chr4 105428346 105428594 -96899753 + AluSx SINE Alu 1 236 -76 3142 210 112 83 chr4 105428594 105428958 -96899389 + L1MC4 LINE L1 7486 7931 -111 347 41 0 0 chr4 105429097 105429146 -96899201 + L1MC4 LINE L1 7989 8037 -5 446 217 72 24 chr4 105429220 105429386 -96898961 + L1MC5 LINE L1 6981 7154 -807 2214 118 0 0 chr4 105429450 105429738 -96898609 + AluSx SINE Alu 1 288 -24 201 74 0 0 chr4 105429745 105429772 -96898575 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 2212 120 7 0 chr4 105430681 105430990 -96897357 + AluSx SINE Alu 1 311 -1 27 0 0 0 chr4 105431097 105431124 -96897223 + AT_rich Low_complexity Low_complexity 1 27 0 250 209 154 0 chr4 105431204 105431295 -96897052 - L1ME LINE L1 -297 5824 5720 24 0 0 0 chr4 105431308 105431332 -96897015 + AT_rich Low_complexity Low_complexity 1 24 0 491 248 32 24 chr4 105431968 105432093 -96896254 + L2 LINE L2 3187 3312 -1 374 273 91 0 chr4 105432094 105432182 -96896165 - MIR SINE MIR -117 145 50 25 31 0 0 chr4 105432459 105432491 -96895856 + AT_rich Low_complexity Low_complexity 1 32 0 259 356 96 5 chr4 105433429 105433637 -96894710 - MIR SINE MIR -6 256 30 769 213 120 37 chr4 105433886 105434102 -96894245 - MIR SINE MIR -7 255 22 4224 138 45 44 chr4 105434194 105434931 -96893416 + L1MB2 LINE L1 5080 5822 -349 2353 82 0 16 chr4 105434931 105435247 -96893100 - AluSx SINE Alu -1 311 1 4224 138 45 44 chr4 105435247 105435597 -96892750 + L1MB2 LINE L1 5822 6170 -1 465 271 40 99 chr4 105435831 105436104 -96892243 + MIR SINE MIR 6 262 0 401 285 118 94 chr4 105436492 105436864 -96891483 - L1M2 LINE L1 -5543 1306 757 230 238 10 30 chr4 105436986 105437087 -96891260 + (CGG)n Simple_repeat Simple_repeat 2 100 0 22 35 0 0 chr4 105437125 105437154 -96891193 + GC_rich Low_complexity Low_complexity 1 29 0 304 324 117 75 chr4 105440167 105440448 -96887899 + L1M2 LINE L1 586 878 -5971 2168 99 10 0 chr4 105441898 105442192 -96886155 + AluSg SINE Alu 2 298 -12 557 287 109 13 chr4 105442555 105442785 -96885562 + MIR SINE MIR 11 262 0 1502 171 32 0 chr4 105443209 105443461 -96884886 + AluJo SINE Alu 40 299 -13 208 238 95 76 chr4 105443915 105444020 -96884327 + MIR SINE MIR 69 175 -87 1345 136 22 173 chr4 105444520 105444611 -96883736 - MER2 DNA MER2_type 0 344 241 2092 131 0 0 chr4 105444611 105444902 -96883445 + AluSx SINE Alu 1 291 -21 1345 136 22 173 chr4 105444902 105444924 -96883423 - MER2 DNA MER2_type -103 241 217 1570 170 22 29 chr4 105444924 105445200 -96883147 + AluJo SINE Alu 5 278 -34 1345 136 22 173 chr4 105445200 105445490 -96882857 - MER2 DNA MER2_type -127 217 1 1858 154 0 4 chr4 105445926 105446205 -96882142 + AluSx SINE Alu 1 278 -34 207 0 0 0 chr4 105446209 105446232 -96882115 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 1261 171 22 121 chr4 105446412 105446816 -96881531 - MLT1A1 LTR MaLR 0 365 2 741 226 175 36 chr4 105446834 105447166 -96881181 + MLT1J LTR MaLR 128 505 -6 2001 113 45 87 chr4 105447378 105447535 -96880812 + THE1B LTR MaLR 1 163 -201 1934 121 36 42 chr4 105447535 105447842 -96880505 - AluSx SINE Alu -7 305 1 2001 113 45 87 chr4 105447842 105448064 -96880283 + THE1B LTR MaLR 163 364 0 5223 58 27 1 chr4 105448399 105449070 -96879277 + L1PA5 LINE L1 5467 6154 0 27 62 0 0 chr4 105449070 105449118 -96879229 + AT_rich Low_complexity Low_complexity 1 48 0 5292 141 32 6 chr4 105449700 105450926 -96877421 + L1PB2 LINE L1 4903 6148 -3 2355 101 7 0 chr4 105451786 105452092 -96876255 - AluSg SINE Alu -2 308 1 22 88 0 0 chr4 105452388 105452445 -96875902 + AT_rich Low_complexity Low_complexity 1 57 0 2262 114 3 0 chr4 105452642 105452939 -96875408 - AluSx SINE Alu -14 298 1 2338 101 0 0 chr4 105453192 105453489 -96874858 - AluSq SINE Alu -16 297 1 667 278 13 9 chr4 105454219 105454446 -96873901 + L1MC4 LINE L1 5682 5909 -1899 22 35 0 0 chr4 105454508 105454537 -96873810 + AT_rich Low_complexity Low_complexity 1 29 0 245 227 13 13 chr4 105454555 105454630 -96873717 + L1MC4 LINE L1 6938 7012 -1030 262 224 26 40 chr4 105454685 105454761 -96873586 + GA-rich Low_complexity Low_complexity 2 76 0 1085 178 182 12 chr4 105454842 105455089 -96873258 + AluJo SINE Alu 1 289 -13 358 245 7 36 chr4 105455096 105455235 -96873112 + L1MC5 LINE L1 7026 7160 -801 369 251 63 93 chr4 105455430 105455968 -96872379 + L1MC5 LINE L1 7261 7782 -179 21 0 0 0 chr4 105456190 105456211 -96872136 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr4 105456712 105456750 -96871597 + AT_rich Low_complexity Low_complexity 1 38 0 2051 134 3 3 chr4 105457560 105457859 -96870488 - AluSq SINE Alu -14 299 1 198 296 80 70 chr4 105458258 105458457 -96869890 + L2 LINE L2 2919 3119 -194 532 280 7 21 chr4 105458717 105458860 -96869487 + MER5B DNA MER1_type 38 178 0 737 292 127 3 chr4 105459015 105459402 -96868945 + L2 LINE L2 1729 2163 -1151 1674 139 110 0 chr4 105459483 105459792 -96868555 + MER2 DNA MER2_type 1 343 -1 21 57 0 0 chr4 105460282 105460317 -96868030 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr4 105460563 105460591 -96867756 + AT_rich Low_complexity Low_complexity 1 28 0 1782 151 7 25 chr4 105460598 105460883 -96867464 - AluJb SINE Alu -23 289 10 17464 186 25 9 chr4 105461345 105466551 -96861796 + L1PA13 LINE L1 1 5327 -1487 2145 88 0 56 chr4 105466551 105466857 -96861490 + AluSc SINE Alu 1 289 -20 17464 186 25 9 chr4 105466857 105468365 -96859982 + L1PA13 LINE L1 5327 6809 -5 1866 207 85 11 chr4 105468406 105469062 -96859285 - Zaphod DNA AcHobo -45 3986 3282 513 261 90 65 chr4 105469057 105469302 -96859045 - Zaphod DNA AcHobo -3364 667 417 * 712 263 75 62 chr4 105470101 105470409 -96857938 - L2 LINE L2 0 3313 3002 227 183 0 33 chr4 105470424 105470484 -96857863 - L1MC4 LINE L1 0 8042 7985 2391 211 215 55 chr4 105470488 105471591 -96856756 - L1MC4 LINE L1 -144 7898 6596 2413 83 0 0 chr4 105471591 105471891 -96856456 + AluY SINE Alu 1 300 -11 2391 211 215 55 chr4 105471891 105471960 -96856387 - L1MC4 LINE L1 -1446 6596 6539 200 190 0 69 chr4 105472735 105472793 -96855554 + GA-rich Low_complexity Low_complexity 4 57 0 27 0 0 0 chr4 105472798 105472825 -96855522 + AT_rich Low_complexity Low_complexity 1 27 0 352 278 78 9 chr4 105473341 105473456 -96854891 + MIR3 SINE MIR 77 199 -9 1656 181 43 15 chr4 105474061 105474633 -96853714 - L1M3 LINE L1 -568 5600 5015 50 18 0 0 chr4 105474654 105474711 -96853636 + AT_rich Low_complexity Low_complexity 1 57 0 1800 157 57 41 chr4 105474810 105475313 -96853034 - L1MA9 LINE L1 0 6323 5852 1014 149 37 47 chr4 105475340 105475357 -96852990 + L1MB1 LINE L1 5619 5635 -533 2068 180 14 6 chr4 105475357 105475719 -96852628 + MLT1A1 LTR MaLR 1 365 0 1014 149 37 47 chr4 105475719 105475916 -96852431 + L1MB1 LINE L1 5635 5831 -337 789 195 17 16 chr4 105475918 105476124 -96852223 + L1MB1 LINE L1 5973 6167 -1 2297 88 0 13 chr4 105476261 105476566 -96851781 + AluY SINE Alu 1 301 -10 1214 124 0 0 chr4 105476566 105476735 -96851612 + AluSg/x SINE Alu 134 302 -10 194 436 21 0 chr4 105476840 105476980 -96851367 - MIR3 SINE MIR -65 143 1 * 360 243 29 66 chr4 105476980 105477098 -96851249 + MIR SINE MIR 61 173 -89 545 245 0 43 chr4 105477208 105477371 -96850976 + L1MA10 LINE L1 6121 6276 -58 1143 117 15 46 chr4 105477391 105477588 -96850759 + MER2 DNA MER2_type 20 210 -135 594 182 312 0 chr4 105478233 105478403 -96849944 + MER58A DNA MER1_type 1 223 -1 180 0 0 0 chr4 105479132 105479152 -96849195 + (TTA)n Simple_repeat Simple_repeat 2 21 0 774 219 37 6 chr4 105479155 105479319 -96849028 - AluJo SINE Alu -29 283 115 27 0 0 0 chr4 105479511 105479538 -96848809 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr4 105479655 105479684 -96848663 + AT_rich Low_complexity Low_complexity 1 29 0 2742 137 33 6 chr4 105479787 105480269 -96848078 - L1MB3 LINE L1 -7 6176 5682 180 0 0 0 chr4 105480285 105480305 -96848042 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2391 86 0 0 chr4 105480666 105480956 -96847391 - AluSp SINE Alu -23 290 1 288 288 0 0 chr4 105481880 105481946 -96846401 - L2 LINE L2 -6 3307 3242 210 253 161 35 chr4 105482462 105482549 -96845798 + MIR SINE MIR 94 191 -71 327 343 241 6 chr4 105482903 105483218 -96845129 - L3 LINE CR1 -222 1355 967 1777 88 94 67 chr4 105483405 105483702 -96844645 - AluSx SINE Alu -7 305 1 328 254 25 59 chr4 105484183 105484301 -96844046 + MIR3 SINE MIR 81 194 -14 22 56 0 0 chr4 105484740 105484776 -96843571 + AT_rich Low_complexity Low_complexity 1 36 0 363 285 46 7 chr4 105485074 105485225 -96843122 - L1MC4a LINE L1 -1892 5916 5760 676 329 10 10 chr4 105485236 105485528 -96842819 - L1MC4a LINE L1 -2102 5706 5415 265 125 107 0 chr4 105485896 105485952 -96842395 - LTR67 LTR ERVL -4 553 492 2121 148 5 58 chr4 105486850 105487262 -96841085 - MLT1B LTR MaLR 0 390 1 642 211 37 2 chr4 105488042 105488209 -96840138 - MER8 DNA MER2_type 0 239 28 208 0 62 0 chr4 105488934 105488966 -96839381 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 977 326 59 14 chr4 105489198 105489344 -96839003 - MLT1K LTR MaLR -128 460 322 2213 101 0 0 chr4 105489344 105489632 -96838715 + AluSg SINE Alu 6 293 -17 977 326 59 14 chr4 105489632 105489924 -96838423 - MLT1K LTR MaLR -266 322 2 345 281 138 19 chr4 105490351 105490511 -96837836 + MER5A DNA MER1_type 7 185 -4 191 350 150 0 chr4 105490771 105490851 -96837496 - MIR3 SINE MIR -21 187 96 41084 32 21 1 chr4 105490896 105496925 -96831422 - L1PA2 LINE L1 0 6155 4 525 209 61 0 chr4 105497116 105497229 -96831118 - MIR SINE MIR -55 207 88 542 263 154 6 chr4 105497229 105497385 -96830962 - MER5A DNA MER1_type 0 189 11 24 0 0 0 chr4 105497842 105497866 -96830481 + AT_rich Low_complexity Low_complexity 1 24 0 2826 113 141 0 chr4 105498725 105499185 -96829162 - MER1A DNA MER1_type -2 525 1 525 217 0 9 chr4 105499295 105499401 -96828946 + FLAM_C SINE Alu 19 123 -20 186 118 0 0 chr4 105500174 105500208 -96828139 + (CA)n Simple_repeat Simple_repeat 2 35 0 1920 175 0 3 chr4 105500410 105500707 -96827640 - AluJo SINE Alu -16 296 1 2914 243 68 39 chr4 105502056 105503319 -96825028 - HAL1 LINE L1 0 2507 1208 181 354 53 26 chr4 105503648 105503761 -96824586 - L2 LINE L2 -1 3312 3197 214 322 152 39 chr4 105503978 105504360 -96823987 - L2 LINE L2 -806 2508 2084 193 318 23 91 chr4 105504451 105504583 -96823764 - MIR SINE MIR -56 206 84 2081 119 3 17 chr4 105504589 105504882 -96823465 + AluSc SINE Alu 1 289 -20 688 276 15 20 chr4 105504984 105505180 -96823167 - MIR SINE MIR -19 243 49 367 253 71 32 chr4 105505306 105505460 -96822887 - MIR SINE MIR -3 259 100 279 125 0 0 chr4 105505460 105505508 -96822839 + L1MA4 LINE L1 6218 6265 -35 244 143 0 0 chr4 105505519 105505561 -96822786 + L1MA4A LINE L1 6250 6291 -12 254 204 11 57 chr4 105505611 105505699 -96822648 + CT-rich Low_complexity Low_complexity 4 87 0 21 0 0 0 chr4 105506072 105506093 -96822254 + AT_rich Low_complexity Low_complexity 1 21 0 2251 119 3 0 chr4 105506175 105506478 -96821869 - AluSq SINE Alu -9 304 1 2014 147 10 3 chr4 105506950 105507242 -96821105 - AluJo SINE Alu -13 299 6 468 276 213 14 chr4 105508296 105508644 -96819703 - Charlie7 DNA MER1_type -2161 451 35 238 291 30 67 chr4 105508735 105508869 -96819478 + L2 LINE L2 2738 2866 -448 25 31 0 0 chr4 105509134 105509166 -96819181 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr4 105509216 105509246 -96819101 + AT_rich Low_complexity Low_complexity 1 30 0 199 119 17 85 chr4 105509425 105509484 -96818863 + (TA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr4 105509596 105509617 -96818730 + AT_rich Low_complexity Low_complexity 1 21 0 1283 238 46 0 chr4 105509662 105509943 -96818404 - AluJo SINE Alu -18 294 1 2640 260 64 19 chr4 105510032 105511061 -96817286 - L1MC4 LINE L1 -178 7864 6790 618 259 70 92 chr4 105511092 105511125 -96817222 - L1MC4 LINE L1 -1196 6846 6814 2234 125 0 0 chr4 105511125 105511429 -96816918 - AluSx SINE Alu -8 304 1 618 259 70 92 chr4 105511429 105511628 -96816719 - L1MC4 LINE L1 -1228 6814 6612 276 30 0 0 chr4 105511628 105511661 -96816686 + (TG)n Simple_repeat Simple_repeat 2 34 0 618 259 70 92 chr4 105511661 105511717 -96816630 - L1MC4 LINE L1 -1430 6612 6556 1978 143 10 3 chr4 105511717 105512025 -96816322 - AluJo SINE Alu -2 310 1 618 259 70 92 chr4 105512025 105512105 -96816242 - L1MC4 LINE L1 -1486 6556 6484 347 211 11 0 chr4 105512107 105512197 -96816150 + CT-rich Low_complexity Low_complexity 1 91 0 568 276 0 0 chr4 105512198 105512314 -96816033 - FLAM_A SINE Alu -17 116 1 600 267 62 0 chr4 105512314 105512475 -96815872 + L2 LINE L2 2616 2786 -528 1359 218 32 35 chr4 105512527 105512875 -96815472 - MLT1A1 LTR MaLR 0 365 19 1071 261 52 24 chr4 105512967 105513297 -96815050 + L2 LINE L2 2467 2805 -509 973 212 139 56 chr4 105513297 105513656 -96814691 - MLT1F LTR MaLR 0 542 154 377 339 10 57 chr4 105513660 105513852 -96814495 + L2 LINE L2 3112 3294 -19 290 68 0 0 chr4 105515527 105515571 -96812776 - MADE1 DNA Mariner -36 44 1 1417 133 8 33 chr4 105515756 105515997 -96812350 - MER46A DNA MER2_type 0 236 2 354 181 319 9 chr4 105516346 105516462 -96811885 - MER5B DNA MER1_type -10 168 17 356 273 0 30 chr4 105516686 105516785 -96811562 + MER5A DNA MER1_type 14 109 -80 818 215 40 5 chr4 105516816 105517016 -96811331 - MER3 DNA MER1_type -1 208 2 1300 108 38 16 chr4 105517246 105517431 -96810916 - AluSx SINE Alu -16 296 108 3352 77 18 5 chr4 105517433 105517876 -96810471 - MLT2A2 LTR ERVL -4 449 1 40991 75 13 13 chr4 105517876 105523530 -96804817 - HERVL-A2 LTR ERVL 0 5654 1 3123 91 61 0 chr4 105523530 105523576 -96804771 - MLT2A2 LTR ERVL 0 453 411 303 28 0 0 chr4 105523576 105523612 -96804735 + (TG)n Simple_repeat Simple_repeat 1 36 0 3123 91 61 0 chr4 105523612 105523992 -96804355 - MLT2A2 LTR ERVL -42 411 1 757 173 9 0 chr4 105523992 105524102 -96804245 - AluSx SINE Alu -201 112 2 2382 114 55 17 chr4 105525472 105525833 -96802514 - THE1C LTR MaLR 0 375 1 10996 116 37 4 chr4 105525833 105527363 -96800984 - THE1C-int LTR MaLR 0 1580 1 2506 133 11 16 chr4 105527363 105527740 -96800607 - THE1C LTR MaLR 0 375 1 532 265 51 89 chr4 105528605 105528678 -96799669 - MIR SINE MIR -1 261 187 1983 143 0 0 chr4 105528678 105528964 -96799383 - AluSq SINE Alu -27 286 1 532 265 51 89 chr4 105528964 105529147 -96799200 - MIR SINE MIR -75 187 15 2504 219 73 37 chr4 105530582 105531317 -96797030 - L1ME3 LINE L1 -2 6160 5399 385 300 77 24 chr4 105532717 105532887 -96795460 + MIR SINE MIR 58 236 -26 1218 273 106 15 chr4 105533031 105533438 -96794909 + MER69 DNA AcHobo 133 576 -650 1113 205 70 74 chr4 105533429 105533888 -96794459 + MER69 DNA AcHobo 2011 2467 -59 * 42362 36 34 2 chr4 105533893 105539847 -96788500 - L1PA3 LINE L1 0 6155 1 404 298 192 0 chr4 105541100 105541251 -96787096 + MER5A DNA MER1_type 10 189 0 2302 146 17 3 chr4 105541394 105541744 -96786603 - THE1A LTR MaLR 0 355 1 12246 100 10 0 chr4 105541747 105543309 -96785038 - THE1A-int LTR MaLR -3 1577 1 2469 114 17 8 chr4 105543309 105543661 -96784686 - THE1A LTR MaLR 0 355 1 521 260 0 0 chr4 105543661 105543784 -96784563 + MIR SINE MIR 84 206 -56 2045 138 17 0 chr4 105544026 105544322 -96784025 - AluSx SINE Alu -11 301 1 856 221 6 0 chr4 105544332 105544495 -96783852 - FRAM SINE Alu -12 164 1 339 325 34 0 chr4 105595592 105595709 -96732638 - L2 LINE L2 0 3313 3193 283 356 34 34 chr4 105595932 105596109 -96732238 + MER5A DNA MER1_type 2 178 0 553 291 6 22 chr4 105596763 105596942 -96731405 - MER5B DNA MER1_type 0 178 3 21 0 0 0 chr4 105597302 105597323 -96731024 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr4 105597490 105597526 -96730821 + AT_rich Low_complexity Low_complexity 1 36 0 1190 164 125 69 chr4 105597725 105597973 -96730374 + MSTD LTR MaLR 73 306 -90 2080 92 8 0 chr4 105597973 105598234 -96730113 + AluSx SINE Alu 29 291 -21 225 83 0 0 chr4 105598242 105598278 -96730069 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1190 164 125 69 chr4 105598278 105598325 -96730022 + MSTD LTR MaLR 312 394 -2 6637 218 70 53 chr4 105598325 105598539 -96729808 + MSTD-int LTR MaLR 2 211 -1524 2308 121 0 0 chr4 105598539 105598844 -96729503 - AluSx SINE Alu -5 307 3 6637 218 70 53 chr4 105598844 105600330 -96728017 + MSTD-int LTR MaLR 211 1730 -5 1425 197 130 20 chr4 105600334 105600689 -96727658 + MSTD LTR MaLR 1 394 -2 271 200 0 18 chr4 105602876 105602931 -96725416 - MLT1K LTR MaLR -348 240 187 1910 128 0 0 chr4 105603029 105603287 -96725060 - AluSq SINE Alu -53 260 3 23 0 0 0 chr4 105604851 105604874 -96723473 + AT_rich Low_complexity Low_complexity 1 23 0 363 209 12 23 chr4 105606641 105606727 -96721620 - Charlie1a DNA MER1_type 0 1455 1371 * 1876 142 27 30 chr4 105606723 105606921 -96721426 - MER44D DNA MER2_type -1884 607 410 2340 137 28 14 chr4 105606921 105607280 -96721067 + THE1B LTR MaLR 1 364 0 1876 142 27 30 chr4 105607280 105607419 -96720928 - MER44D DNA MER2_type -2081 410 1 * 4272 188 84 70 chr4 105607419 105608055 -96720292 - Charlie1a DNA MER1_type -1404 1357 732 16414 92 2 0 chr4 105608055 105611137 -96717210 - L1PA7 LINE L1 -12 6142 3067 4272 188 84 70 chr4 105611137 105611838 -96716509 - Charlie1a DNA MER1_type -2029 732 1 28 29 0 0 chr4 105612208 105612243 -96716104 + AT_rich Low_complexity Low_complexity 1 35 0 401 154 0 13 chr4 105612438 105612516 -96715831 + CT-rich Low_complexity Low_complexity 4 80 0 1481 173 4 33 chr4 105612556 105612827 -96715520 + AluJo SINE Alu 9 271 -41 318 276 292 10 chr4 105613092 105613284 -96715063 + MIR SINE MIR 17 262 0 329 313 35 17 chr4 105614989 105615104 -96713243 + MIR SINE MIR 40 156 -106 * 578 272 125 12 chr4 105615096 105615312 -96713035 - MIR SINE MIR -1 261 18 737 217 60 0 chr4 105615359 105615525 -96712822 - MIR SINE MIR -86 176 1 339 289 0 0 chr4 105615525 105615611 -96712736 + MIR SINE MIR 163 248 -14 1028 212 78 93 chr4 105616115 105616614 -96711733 - LTR8A LTR ERV1 0 727 106 270 284 0 49 chr4 105616614 105616716 -96711631 - LTR8A LTR ERV1 -444 283 187 299 250 70 30 chr4 105616770 105616870 -96711477 - LTR8 LTR ERV1 -587 104 1 315 317 49 12 chr4 105617032 105617196 -96711151 + MIR SINE MIR 73 242 -20 22 56 0 0 chr4 105617218 105617254 -96711093 + AT_rich Low_complexity Low_complexity 1 36 0 272 341 126 11 chr4 105617646 105617828 -96710519 - L3 LINE CR1 -12 1565 1363 298 307 100 33 chr4 105620048 105620198 -96708149 - L3 LINE CR1 -186 1391 1232 197 420 40 0 chr4 105620227 105620401 -96707946 - L3 LINE CR1 -1194 383 203 2292 96 14 39 chr4 105620638 105621002 -96707345 - THE1A LTR MaLR 0 355 1 672 220 145 7 chr4 105621063 105621260 -96707087 - MIR SINE MIR -32 230 13 252 314 149 29 chr4 105621680 105621855 -96706492 + MIR SINE MIR 49 244 -18 196 283 0 0 chr4 105621821 105621867 -96706480 + L2 LINE L2 3256 3301 -12 * 180 267 190 35 chr4 105622751 105622867 -96705480 - MER5A DNA MER1_type -24 165 32 23 54 0 0 chr4 105622913 105622950 -96705397 + AT_rich Low_complexity Low_complexity 1 37 0 186 43 0 0 chr4 105623396 105623419 -96704928 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 467 314 23 16 chr4 105624707 105624790 -96703557 + HERV16 LTR ERVL 1695 1776 -3220 14286 132 21 37 chr4 105624790 105625892 -96702455 - Tigger1 DNA MER2_type 0 2418 1300 2192 124 16 0 chr4 105625892 105626199 -96702148 - AluSx SINE Alu 0 312 1 14286 132 21 37 chr4 105626199 105626635 -96701712 - Tigger1 DNA MER2_type -1118 1300 859 2070 109 3 0 chr4 105626635 105626945 -96701402 - AluSq SINE Alu 0 311 1 14286 132 21 37 chr4 105626945 105627860 -96700487 - Tigger1 DNA MER2_type -1559 859 2 467 314 23 16 chr4 105627860 105628035 -96700312 + HERV16 LTR ERVL 1776 1954 -3042 860 200 17 51 chr4 105628042 105628277 -96700070 + MLT2D LTR ERVL 15 241 -173 2359 158 15 8 chr4 105628277 105628677 -96699670 + MER57A LTR ERV1 1 403 0 456 19 0 0 chr4 105628683 105628736 -96699611 + (CA)n Simple_repeat Simple_repeat 2 54 0 308 248 139 23 chr4 105628776 105628905 -96699442 + HERV16 LTR ERVL 1944 2087 -2909 685 258 60 93 chr4 105629052 105629505 -96698842 + LTR16A LTR ERVL 7 444 -6 195 42 0 0 chr4 105629737 105629761 -96698586 + (TTA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr4 105629864 105629888 -96698459 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 105630183 105630204 -96698143 + AT_rich Low_complexity Low_complexity 1 21 0 279 79 0 0 chr4 105630363 105630401 -96697946 + (TA)n Simple_repeat Simple_repeat 1 38 0 362 294 55 11 chr4 105630493 105630840 -96697507 - L1M4 LINE L1 -2800 3346 2985 347 172 0 0 chr4 105630864 105630922 -96697425 + LTR47A LTR ERVL 9 66 -386 342 183 197 0 chr4 105630922 105630993 -96697354 + LTR47A LTR ERVL 366 450 -2 231 154 0 0 chr4 105631051 105631090 -96697257 + LTR47B LTR ERVL 66 104 -339 1032 207 24 5 chr4 105631146 105631359 -96696988 + LTR47A LTR ERVL 236 452 0 372 256 133 50 chr4 105631359 105631855 -96696492 - L1M4 LINE L1 -3156 2990 2454 408 261 51 42 chr4 105631858 105632176 -96696171 - MLT1I LTR MaLR -1 408 1 452 311 3 0 chr4 105632333 105632677 -96695670 + (TA)n Simple_repeat Simple_repeat 1 345 0 308 291 47 0 chr4 105632678 105632764 -96695583 - L1MC4 LINE L1 -1339 6703 6614 265 231 0 22 chr4 105632772 105632863 -96695484 + L1MC4 LINE L1 6615 6703 -1339 1610 188 124 31 chr4 105632920 105633340 -96695007 + LTR40b LTR ERVL 4 462 0 1725 189 0 3 chr4 105633948 105634244 -96694103 - AluJo SINE Alu -16 296 2 619 122 0 56 chr4 105634723 105634775 -96693572 - HY3 scRNA scRNA 0 101 56 2007 147 0 16 chr4 105634775 105635082 -96693265 + AluJb SINE Alu 1 302 -10 619 122 0 56 chr4 105635082 105635136 -96693211 - HY3 scRNA scRNA -45 56 1 292 189 15 22 chr4 105635155 105635249 -96693098 - L1ME LINE L1 -350 5820 5727 802 290 47 44 chr4 105635309 105635626 -96692721 + Charlie2 DNA MER1_type 1 318 -2544 2308 133 24 10 chr4 105635664 105636047 -96692300 + MLT1B LTR MaLR 3 390 0 1286 186 77 138 chr4 105636054 105636393 -96691954 + Charlie2 DNA MER1_type 1887 2245 -617 1477 180 0 0 chr4 105636393 105636632 -96691715 + AluJo SINE Alu 36 274 -38 1286 186 77 138 chr4 105636632 105637255 -96691092 + Charlie2 DNA MER1_type 2245 2790 -72 1730 181 0 33 chr4 105637263 105637566 -96690781 + AluJb SINE Alu 1 293 -19 429 257 64 42 chr4 105637676 105638018 -96690329 - L1ME LINE L1 -656 5508 5160 354 304 96 2 chr4 105638025 105638226 -96690121 - L1ME LINE L1 -1037 5109 4880 4319 166 33 33 chr4 105638237 105639095 -96689252 - MER21B LTR ERV1 -1 862 5 2764 184 63 24 chr4 105639190 105639825 -96688522 - MER21B-int LTR ERV1 -56 4135 3476 318 251 88 76 chr4 105642396 105642567 -96685780 + L1ME4a LINE L1 5943 6115 -6 200 323 55 10 chr4 105643099 105643196 -96685151 - MIR SINE MIR -56 152 48 717 203 120 48 chr4 105643300 105643591 -96684756 + L1ME2 LINE L1 5798 6109 -55 302 311 232 42 chr4 105644234 105644588 -96683759 + L1M2 LINE L1 591 1011 -5838 183 133 0 0 chr4 105647381 105647411 -96680936 + MIR SINE MIR 163 192 -70 450 218 145 0 chr4 105648871 105648995 -96679352 + MIR SINE MIR 6 147 -115 1332 143 35 116 chr4 105649032 105649376 -96678971 - Charlie3 DNA MER1_type 0 2712 24 4205 118 228 86 chr4 105649384 105651055 -96677292 - pTR5 LTR ERV1 -9 2429 375 1386 111 21 90 chr4 105651087 105651376 -96676971 + L1MA5A LINE L1 6026 6294 -3 321 200 15 0 chr4 105651399 105651464 -96676883 + MIR SINE MIR 136 201 -61 268 405 65 22 chr4 105651621 105651806 -96676541 - L2 LINE L2 0 3272 3080 402 269 159 7 chr4 105651864 105652009 -96676338 + MER5A DNA MER1_type 4 170 -19 242 200 0 20 chr4 105652094 105652144 -96676203 - L2 LINE L2 -12 3301 3253 303 282 254 29 chr4 105652891 105653100 -96675247 + MIR SINE MIR 3 258 -4 263 318 12 12 chr4 105653227 105653312 -96675035 + MIR SINE MIR 16 100 -108 21 36 0 0 chr4 105654269 105654297 -96674050 + AT_rich Low_complexity Low_complexity 1 28 0 386 327 13 20 chr4 105654392 105654545 -96673802 - L1MC/D LINE L1 -2163 5645 5494 1026 185 59 7 chr4 105655182 105655468 -96672879 + MER33 DNA MER1_type 3 303 -21 2217 131 0 6 chr4 105655484 105655796 -96672551 + AluSx SINE Alu 1 310 -2 1676 251 54 18 chr4 105655936 105656491 -96671856 - L1ME1 LINE L1 -5 6161 5587 889 199 6 0 chr4 105656491 105656647 -96671700 + AluJb SINE Alu 130 286 -26 4461 225 46 63 chr4 105656656 105658044 -96670303 - L1ME1 LINE L1 -743 5403 4257 2521 44 0 0 chr4 105658044 105658341 -96670006 + AluY SINE Alu 1 297 -14 4461 225 46 63 chr4 105658341 105659024 -96669323 - L1ME1 LINE L1 -1889 4257 3564 272 316 180 8 chr4 105659034 105659284 -96669063 + L2 LINE L2 3021 3313 0 2027 174 26 0 chr4 105660033 105660419 -96667928 + MER57A LTR ERV1 1 396 -7 306 342 75 0 chr4 105660521 105660641 -96667706 - L2 LINE L2 -1 3271 3143 560 249 83 58 chr4 105660868 105661073 -96667274 - MIR SINE MIR 0 262 53 359 161 123 0 chr4 105661944 105661980 -96666367 - MLT2B3 LTR ERVL 0 554 524 474 88 0 0 chr4 105661980 105662048 -96666299 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 359 161 123 0 chr4 105662048 105662092 -96666255 - MLT2B3 LTR ERVL -30 524 464 24 0 0 0 chr4 105662447 105662471 -96665876 + AT_rich Low_complexity Low_complexity 1 24 0 1123 209 25 4 chr4 105662894 105663129 -96665218 + MER21B LTR ERV1 1 240 -623 817 154 19 25 chr4 105663148 105663310 -96665037 - MER21A LTR ERV1 -17 914 754 2443 167 33 64 chr4 105663349 105663895 -96664452 + MER21A LTR ERV1 386 914 -17 259 333 32 32 chr4 105664507 105664630 -96663717 - MIR3 SINE MIR -35 173 51 795 149 15 67 chr4 105664812 105665007 -96663340 - L1MA6 LINE L1 -3 6297 6113 214 264 94 57 chr4 105716004 105716110 -96612237 + L2 LINE L2 3199 3308 -5 270 204 19 0 chr4 105716332 105716386 -96611961 - L2 LINE L2 -2 3270 3216 315 0 0 0 chr4 105716946 105716981 -96611366 + (TG)n Simple_repeat Simple_repeat 1 35 0 287 247 52 0 chr4 105717474 105717571 -96610776 + (TA)n Simple_repeat Simple_repeat 2 103 0 2149 86 86 10 chr4 105718125 105718415 -96609932 + AluSx SINE Alu 1 312 0 183 80 0 0 chr4 105719137 105719162 -96609185 + (T)n Simple_repeat Simple_repeat 1 25 0 525 268 270 0 chr4 105719642 105720149 -96608198 - L1ME4a LINE L1 -6 6115 5472 1497 156 10 21 chr4 105721330 105721619 -96606728 + L1MB3 LINE L1 5891 6176 -7 253 233 0 0 chr4 105721770 105721813 -96606534 + MER57A LTR ERV1 295 337 -66 1788 126 4 0 chr4 105721968 105722237 -96606110 - L1PB3 LINE L1 0 6154 5885 333 253 54 108 chr4 105722420 105722436 -96605911 + L2 LINE L2 2204 2219 -1095 8352 111 30 3 chr4 105722436 105723703 -96604644 + HSMAR2 DNA Mariner 1 1301 -1 333 253 54 108 chr4 105723703 105723852 -96604495 + L2 LINE L2 2219 2360 -954 294 50 0 0 chr4 105724058 105724098 -96604249 + (CA)n Simple_repeat Simple_repeat 1 40 0 823 85 15 8 chr4 105724278 105724408 -96603939 + (TTTCC)n Simple_repeat Simple_repeat 1 131 0 8405 196 135 6 chr4 105724510 105726608 -96601739 + L1PBa LINE L1 6 2374 -4489 * 11866 28 2 0 chr4 105726591 105728883 -96599464 + L1PA4 LINE L1 3860 6155 0 2066 108 6 6 chr4 105728885 105729208 -96599139 + L1PB1 LINE L1 5469 5791 -360 31 26 0 0 chr4 105729208 105729246 -96599101 + AT_rich Low_complexity Low_complexity 1 38 0 2341 128 0 13 chr4 105729249 105729623 -96598724 + L1PB1 LINE L1 5783 6151 0 564 143 0 0 chr4 105730947 105731045 -96597302 - L1PA16 LINE L1 -1 6165 6068 753 210 131 17 chr4 105731338 105731628 -96596719 + MER33 DNA MER1_type 2 324 0 336 309 88 64 chr4 105732343 105732673 -96595674 - HAL1 LINE L1 0 2507 2170 28 0 0 0 chr4 105732692 105732720 -96595627 + AT_rich Low_complexity Low_complexity 1 28 0 182 349 15 0 chr4 105734026 105734092 -96594255 - MIR SINE MIR -29 233 167 197 33 33 0 chr4 105734428 105734458 -96593889 + (ATG)n Simple_repeat Simple_repeat 2 32 0 360 0 0 0 chr4 105735212 105735252 -96593095 + (CA)n Simple_repeat Simple_repeat 2 41 0 1286 150 44 137 chr4 105736086 105736151 -96592196 - MLT1B LTR MaLR -8 382 313 2209 100 3 0 chr4 105736151 105736442 -96591905 + AluSx SINE Alu 4 295 -17 1286 150 44 137 chr4 105736442 105736742 -96591605 - MLT1B LTR MaLR -77 313 51 4061 238 89 41 chr4 105736821 105739247 -96589100 - L1ME1 LINE L1 -4 6231 3690 300 332 26 60 chr4 105739270 105739722 -96588625 - L1ME1 LINE L1 -5507 889 453 311 343 104 47 chr4 105739792 105740110 -96588237 - L1ME1 LINE L1 -6027 369 34 279 208 19 0 chr4 105740110 105740163 -96588184 - MIR SINE MIR -113 149 96 * 395 319 50 85 chr4 105740156 105740416 -96587931 + MIR SINE MIR 7 257 -5 1673 122 0 0 chr4 105741913 105742151 -96586196 - AluSg/x SINE Alu 0 310 73 189 214 0 0 chr4 105742293 105742335 -96586012 + T-rich Low_complexity Low_complexity 2 43 0 270 0 0 0 chr4 105743763 105743793 -96584554 + (CAA)n Simple_repeat Simple_repeat 1 30 0 531 331 50 50 chr4 105743897 105744353 -96583994 + L2 LINE L2 2309 2764 -550 1101 102 82 15 chr4 105745150 105745346 -96583001 - L1PA15 LINE L1 -1 6164 5956 287 273 40 0 chr4 105745494 105745593 -96582754 - MER5C DNA MER1_type 0 324 222 221 333 65 111 chr4 105745679 105745940 -96582407 + L2 LINE L2 2935 3183 -89 1199 213 81 51 chr4 105746576 105746910 -96581437 - MER2 DNA MER2_type 0 344 1 14769 223 30 46 chr4 105748451 105754335 -96574012 - L1PA15 LINE L1 0 7603 1520 207 0 0 0 chr4 105754598 105754621 -96573726 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 300 317 41 16 chr4 105756957 105757080 -96571267 + L1ME4a LINE L1 5950 6075 -46 24 32 0 0 chr4 105758660 105758691 -96569656 + AT_rich Low_complexity Low_complexity 1 31 0 261 0 0 0 chr4 105759731 105759760 -96568587 + (T)n Simple_repeat Simple_repeat 1 29 0 1872 107 38 14 chr4 105760290 105760579 -96567768 - AluSx SINE Alu -16 296 1 244 176 0 106 chr4 105761417 105761502 -96566845 + L1MC4 LINE L1 6628 6703 -1339 21 0 0 0 chr4 105762645 105762666 -96565681 + AT_rich Low_complexity Low_complexity 1 21 0 5118 104 28 4 chr4 105763646 105764432 -96563915 - L1MA2 LINE L1 -3 6301 5497 184 340 0 0 chr4 105765500 105765547 -96562800 - L2 LINE L2 -8 3264 3218 932 141 146 28 chr4 105765976 105766189 -96562158 + L1MC3 LINE L1 7548 7785 0 291 93 0 0 chr4 105767383 105767426 -96560921 + (TTCC)n Simple_repeat Simple_repeat 4 46 0 32 67 0 0 chr4 105767947 105768007 -96560340 + AT_rich Low_complexity Low_complexity 1 60 0 270 193 0 0 chr4 105768163 105768220 -96560127 + T-rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr4 105769403 105769426 -96558921 + AT_rich Low_complexity Low_complexity 1 23 0 324 0 0 0 chr4 105770532 105770568 -96557779 + (CA)n Simple_repeat Simple_repeat 1 36 0 880 209 39 10 chr4 105770819 105771025 -96557322 + MIR SINE MIR 5 216 -46 27 29 0 0 chr4 105771034 105771068 -96557279 + AT_rich Low_complexity Low_complexity 1 34 0 822 320 81 21 chr4 105771554 105771976 -96556371 + LTR16B LTR ERVL 1 447 -17 329 91 0 0 chr4 105772408 105772452 -96555895 + Alu SINE Alu 1 44 -258 1501 270 179 46 chr4 105772510 105772657 -96555690 + L2 LINE L2 1963 2089 -1224 1470 188 3 55 chr4 105772657 105772966 -96555381 - AluJo SINE Alu -16 296 4 1501 270 179 46 chr4 105772966 105774018 -96554329 + L2 LINE L2 2089 3312 -1 214 337 122 31 chr4 105774136 105774332 -96554015 - L2 LINE L2 -2 3311 3098 257 279 138 36 chr4 105775141 105775333 -96553014 - MIR SINE MIR -38 224 10 682 255 165 0 chr4 105775509 105775709 -96552638 - MIR SINE MIR -28 234 2 1386 238 103 46 chr4 105776667 105777144 -96551203 + MLT2B1 LTR ERVL 1 534 -20 275 133 0 17 chr4 105777150 105777210 -96551137 + (TC)n Simple_repeat Simple_repeat 1 59 0 287 132 75 0 chr4 105777210 105777263 -96551084 + MLT2D LTR ERVL 358 414 0 30 27 0 0 chr4 105778200 105778237 -96550110 + AT_rich Low_complexity Low_complexity 1 37 0 7728 232 44 66 chr4 105778237 105778911 -96549436 - L1MA9 LINE L1 -38 7295 6608 2105 130 13 0 chr4 105778911 105779218 -96549129 - AluSx SINE Alu -1 311 1 7728 232 44 66 chr4 105779218 105779299 -96549048 - L1MA9 LINE L1 -725 6608 6527 14004 136 23 16 chr4 105779299 105782437 -96545910 + L1PA11 LINE L1 3030 6173 -1 7728 232 44 66 chr4 105782437 105783527 -96544820 - L1MA9 LINE L1 -806 6527 5415 322 188 58 14 chr4 105783527 105783596 -96544751 + Tigger5 DNA MER2_type 2252 2323 0 7728 232 44 66 chr4 105783596 105783645 -96544702 - L1MA9 LINE L1 -1918 5415 5366 516 189 11 0 chr4 105783645 105783735 -96544612 + Tigger5 DNA MER2_type 2231 2321 -2 7728 232 44 66 chr4 105783735 105784739 -96543608 - L1MA9 LINE L1 -1967 5366 4342 236 54 54 0 chr4 105784739 105784776 -96543571 + T-rich Low_complexity Low_complexity 2 40 0 7728 232 44 66 chr4 105784776 105785627 -96542720 - L1MA9 LINE L1 -2991 4342 3474 3061 168 8 2 chr4 105785627 105785996 -96542351 - L1PB3 LINE L1 -1 6153 5779 185 62 0 31 chr4 105785996 105786028 -96542319 + (TA)n Simple_repeat Simple_repeat 1 31 0 3061 168 8 2 chr4 105786028 105786188 -96542159 - L1PB3 LINE L1 -375 5779 5621 7728 232 44 66 chr4 105786188 105786212 -96542135 - L1MA9 LINE L1 -3859 3474 3451 2027 103 0 11 chr4 105786212 105786485 -96541862 + AluY SINE Alu 25 294 -17 7728 232 44 66 chr4 105786485 105788226 -96540121 - L1MA9 LINE L1 -3882 3451 2148 2093 153 0 0 chr4 105788226 105788534 -96539813 - AluSx SINE Alu -4 308 1 7728 232 44 66 chr4 105788534 105790633 -96537714 - L1MA9 LINE L1 -5185 2148 5 24 32 0 0 chr4 105791891 105791922 -96536425 + AT_rich Low_complexity Low_complexity 1 31 0 1755 129 0 0 chr4 105791972 105792244 -96536103 - L1PA14 LINE L1 -3 6158 5887 854 223 61 0 chr4 105793154 105793351 -96534996 - MER58A DNA MER1_type -15 209 1 601 339 108 16 chr4 105793712 105794028 -96534319 + L2 LINE L2 2286 2630 -684 474 49 0 0 chr4 105794181 105794242 -96534105 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 334 323 109 20 chr4 105794242 105794490 -96533857 + L2 LINE L2 2989 3258 -55 1261 260 70 28 chr4 105796225 105796694 -96531653 - MER113 DNA MER1_type? -1 520 32 281 331 135 6 chr4 105797028 105797191 -96531156 + MIR SINE MIR 3 186 -76 622 305 57 16 chr4 105797201 105797447 -96530900 - MIR SINE MIR 0 262 7 24 0 0 0 chr4 105797659 105797683 -96530664 + AT_rich Low_complexity Low_complexity 1 24 0 7588 27 0 1 chr4 105798110 105799571 -96528776 + L1PA4 LINE L1 4688 6155 0 606 263 121 33 chr4 105800175 105801176 -96527171 - L1MEc LINE L1 -3887 2509 1266 1707 174 3 19 chr4 105801176 105801486 -96526861 - AluJb SINE Alu -7 305 1 606 263 121 33 chr4 105801486 105801648 -96526699 - L1MEc LINE L1 -5130 1266 1120 1031 285 119 41 chr4 105801668 105802574 -96525773 - L1M4 LINE L1 -2953 3193 2217 234 0 0 0 chr4 105802578 105802604 -96525743 + (TG)n Simple_repeat Simple_repeat 1 26 0 2903 220 28 24 chr4 105802614 105803224 -96525123 - L1 LINE L1 -1909 4237 3622 2000 125 7 0 chr4 105803224 105803513 -96524834 + AluSg1 SINE Alu 1 291 -18 2903 220 28 24 chr4 105803513 105803644 -96524703 - L1 LINE L1 -2524 3622 3493 346 143 16 48 chr4 105803847 105803910 -96524437 + Tigger4(Zombi) DNA MER2_type 2671 2731 0 30 69 0 0 chr4 105803930 105803988 -96524359 + AT_rich Low_complexity Low_complexity 1 58 0 392 0 0 20 chr4 105804556 105804605 -96523742 + (TC)n Simple_repeat Simple_repeat 2 49 0 5859 154 6 15 chr4 105804679 105805746 -96522601 - L1MA8 LINE L1 -27 6264 5210 2527 110 6 3 chr4 105805746 105806109 -96522238 - THE1B LTR MaLR 0 364 1 5859 154 6 15 chr4 105806109 105806303 -96522044 - L1MA8 LINE L1 -1081 5210 5016 843 325 79 11 chr4 105806303 105806849 -96521498 + L2 LINE L2 2699 3278 -35 1183 222 31 28 chr4 105808857 105809177 -96519170 - L1MB7 LINE L1 -13 6171 5851 4412 231 57 20 chr4 105809178 105810526 -96517821 - L1MB7 LINE L1 -1382 4764 3367 338 313 67 33 chr4 105811122 105811272 -96517075 - MIR SINE MIR -62 200 46 2544 36 0 13 chr4 105812767 105813073 -96515274 + AluY SINE Alu 1 302 -9 3245 178 24 63 chr4 105814031 105814851 -96513496 + L1 LINE L1 4406 5193 -953 1386 177 112 3 chr4 105814844 105815149 -96513198 - L1P LINE L1 -1214 4932 4595 * 4550 120 26 15 chr4 105815146 105816056 -96512291 + L1PA13 LINE L1 5051 5967 -196 * 6059 239 24 35 chr4 105816053 105818024 -96510323 + L1MB7 LINE L1 2891 4838 -1308 592 135 0 0 chr4 105818024 105818120 -96510227 + HSMAR1 DNA Mariner 1 96 -1191 228 111 48 0 chr4 105818158 105818221 -96510126 + (TA)n Simple_repeat Simple_repeat 1 66 0 2068 106 3 40 chr4 105818221 105818522 -96509825 - AluSx SINE Alu -19 293 4 4198 110 52 44 chr4 105818525 105819236 -96509111 + HSMAR1 DNA Mariner 87 803 -484 4590 178 36 7 chr4 105819242 105820200 -96508147 + L1MB7 LINE L1 5171 6159 -25 23 54 0 0 chr4 105820456 105820493 -96507854 + AT_rich Low_complexity Low_complexity 1 37 0 394 43 0 0 chr4 105820499 105820545 -96507802 + (CA)n Simple_repeat Simple_repeat 1 46 0 2266 58 26 23 chr4 105820873 105821183 -96507164 - AluY SINE Alu 0 311 1 629 158 8 0 chr4 105821369 105821489 -96506858 + CT-rich Low_complexity Low_complexity 1 121 0 680 258 0 12 chr4 105821491 105821658 -96506689 - FRAM SINE Alu -1 165 1 23 33 0 0 chr4 105821741 105821771 -96506576 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 105823024 105823046 -96505301 + AT_rich Low_complexity Low_complexity 1 22 0 287 234 69 28 chr4 105823587 105823732 -96504615 + L1MC5 LINE L1 7627 7777 -184 192 125 0 0 chr4 105824068 105824100 -96504247 + (TG)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr4 105825522 105825543 -96502804 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr4 105825704 105825743 -96502604 + AT_rich Low_complexity Low_complexity 1 39 0 297 167 0 0 chr4 105825751 105825805 -96502542 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 71 0 0 chr4 105826150 105826192 -96502155 + AT_rich Low_complexity Low_complexity 1 42 0 628 78 17 26 chr4 105827053 105827169 -96501178 + (TTCC)n Simple_repeat Simple_repeat 2 116 0 519 223 58 73 chr4 105827345 105827605 -96500742 - MER112 DNA MER1_type 0 256 1 521 356 62 4 chr4 105828329 105828554 -96499793 - MIR SINE MIR -16 246 9 572 207 0 17 chr4 105829634 105829750 -96498597 - FLAM_A SINE Alu -17 125 12 22 56 0 0 chr4 105830502 105830538 -96497809 + AT_rich Low_complexity Low_complexity 1 36 0 216 210 16 0 chr4 105830801 105830863 -96497484 + A-rich Low_complexity Low_complexity 5 67 0 1868 174 11 50 chr4 105832716 105833095 -96495252 + THE1B LTR MaLR 1 364 0 386 258 114 8 chr4 105833278 105833410 -96494937 + MIR3 SINE MIR 63 208 0 379 306 60 49 chr4 105834198 105834381 -96493966 - MIR SINE MIR -57 205 21 587 129 0 0 chr4 105834550 105834643 -96493704 - L1M2 LINE L1 -668 5623 5531 1602 175 40 0 chr4 105834644 105834918 -96493429 + Tigger3b DNA MER2_type 2 286 -945 722 266 13 6 chr4 105834954 105835112 -96493235 - MER8 DNA MER2_type -80 159 1 5019 139 75 6 chr4 105835115 105835997 -96492350 + Tigger3b DNA MER2_type 289 1231 0 1391 182 24 3 chr4 105836001 105836452 -96491895 - L1M2 LINE L1 -744 5402 5068 355 230 0 0 chr4 105836450 105836524 -96491823 - L1M2 LINE L1 -1327 4819 4746 * 3975 248 35 58 chr4 105836573 105837930 -96490417 + L1M3b LINE L1 603 1908 -4443 494 299 108 10 chr4 105838031 105838225 -96490122 + MIR SINE MIR 4 216 -46 222 304 33 11 chr4 105840748 105840840 -96487507 + L3 LINE CR1 334 427 -1150 243 250 78 0 chr4 105840989 105841053 -96487294 + L2 LINE L2 3238 3306 -7 349 288 172 19 chr4 105841788 105842055 -96486292 + MER113 DNA MER1_type? 189 496 -25 21 0 0 0 chr4 105842453 105842474 -96485873 + AT_rich Low_complexity Low_complexity 1 21 0 2313 76 3 3 chr4 105842582 105842886 -96485461 - AluY SINE Alu -7 304 1 1647 72 176 0 chr4 105843702 105843952 -96484395 - AluSx SINE Alu -8 294 1 283 175 32 32 chr4 105844001 105844064 -96484283 - L2 LINE L2 -1 3271 3209 234 260 67 29 chr4 105845576 105845680 -96482667 - L1ME3A LINE L1 -28 6142 6035 295 274 20 20 chr4 105845954 105846056 -96482291 - L1ME3A LINE L1 -366 5796 5695 1052 275 52 57 chr4 105846108 105846788 -96481559 - L1ME3A LINE L1 -823 5323 4648 362 272 101 4 chr4 105846844 105847072 -96481275 - L1ME3A LINE L1 -1643 4503 4254 1787 238 63 62 chr4 105847129 105847727 -96480620 - LTR9 LTR ERV1 -13 599 1 1160 285 95 43 chr4 105847738 105848778 -96479569 - L1ME3A LINE L1 -1930 4216 3123 1079 189 58 5 chr4 105848788 105848994 -96479353 - AluJb SINE Alu -11 301 85 23 54 0 0 chr4 105849019 105849056 -96479291 + AT_rich Low_complexity Low_complexity 1 37 0 7939 58 12 3 chr4 105849563 105850561 -96477786 + LTR13 LTR ERVK 1 1007 0 23 33 0 0 chr4 105851852 105851882 -96476465 + AT_rich Low_complexity Low_complexity 1 30 0 28 29 0 0 chr4 105852579 105852614 -96475733 + AT_rich Low_complexity Low_complexity 1 35 0 436 254 58 53 chr4 105853317 105853506 -96474841 - MIR3 SINE MIR -11 197 8 199 350 103 8 chr4 105855208 105855325 -96473022 - MIR SINE MIR -60 148 21 738 233 38 119 chr4 105855758 105855994 -96472353 - MIR SINE MIR -14 248 32 2290 106 0 3 chr4 105857733 105858035 -96470312 + AluSq SINE Alu 1 301 -12 256 256 218 32 chr4 105859039 105859195 -96469152 - L2 LINE L2 0 3313 3129 208 327 80 0 chr4 105859364 105859477 -96468870 + L2 LINE L2 2286 2407 -907 264 30 0 0 chr4 105861047 105861080 -96467267 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 227 293 0 0 chr4 105864027 105864085 -96464262 + tRNA-Ile-ATT tRNA tRNA 17 74 -3 280 323 0 0 chr4 105865047 105865146 -96463201 + (TA)n Simple_repeat Simple_repeat 2 100 0 324 339 86 13 chr4 105865312 105865616 -96462731 + L1ME LINE L1 5000 5325 -821 254 254 28 99 chr4 105865780 105865922 -96462425 + L1ME LINE L1 5553 5684 -437 452 243 0 7 chr4 105866022 105866166 -96462181 + (TA)n Simple_repeat Simple_repeat 2 144 0 332 248 19 112 chr4 105866889 105867050 -96461297 + MIR SINE MIR 47 192 -70 312 324 108 22 chr4 105867806 105867991 -96460356 - L3 LINE CR1 -1 1576 1376 395 267 64 38 chr4 105869254 105869516 -96458831 + MLT1J2 LTR MaLR 91 403 -47 207 0 0 0 chr4 105869523 105869546 -96458801 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 967 101 0 7 chr4 105869546 105869677 -96458670 - L1PA10 LINE L1 -18 6150 6019 2078 129 0 20 chr4 105869677 105870019 -96458328 + L1P LINE L1 4706 5040 -1106 228 200 0 20 chr4 105870019 105870069 -96458278 + MLT1I LTR MaLR 354 402 -7 1971 125 3 7 chr4 105870103 105870390 -96457957 - AluSq SINE Alu -25 288 3 287 335 46 36 chr4 105871260 105871428 -96456919 - MER5A DNA MER1_type -8 181 1 328 172 23 0 chr4 105871450 105871537 -96456810 + (TA)n Simple_repeat Simple_repeat 2 90 0 6198 64 0 0 chr4 105872586 105873379 -96454968 - L1PA6 LINE L1 0 6469 5677 16372 84 8 21 chr4 105873383 105875776 -96452571 - L1PA6 LINE L1 -2939 3522 1162 576 149 0 0 chr4 105875774 105875861 -96452486 - L1PA6 LINE L1 -6365 96 10 * 21 36 0 0 chr4 105876621 105876649 -96451698 + AT_rich Low_complexity Low_complexity 1 28 0 296 331 54 43 chr4 105876845 105877029 -96451318 + MER5A DNA MER1_type 2 187 -2 276 30 0 0 chr4 105877039 105877072 -96451275 + (TG)n Simple_repeat Simple_repeat 2 34 0 2348 265 138 45 chr4 105878041 105879147 -96449200 + MER69B DNA AcHobo 1 1209 -17 5379 211 15 32 chr4 105880046 105881200 -96447147 + L1MA1 LINE L1 15 1148 -6417 5976 156 19 11 chr4 105881202 105882411 -96445936 + L1MA1 LINE L1 5636 6859 -746 5096 101 11 4 chr4 105882412 105883167 -96445180 + L1MA1 LINE L1 6962 7721 0 346 347 107 48 chr4 105883275 105883754 -96444593 - L2 LINE L2 -2 3311 2805 664 295 76 0 chr4 105884255 105884492 -96443855 - MIR SINE MIR -1 261 7 1372 333 86 55 chr4 105884604 105885736 -96442611 - L2 LINE L2 0 3313 2111 1148 203 98 49 chr4 105885736 105886062 -96442285 + MER2 DNA MER2_type 1 342 -2 1372 333 86 55 chr4 105886062 105886441 -96441906 - L2 LINE L2 -1202 2111 1745 808 330 88 40 chr4 105886485 105886693 -96441654 - L2 LINE L2 -811 2503 2306 1451 154 3 111 chr4 105886693 105887025 -96441322 + AluJb SINE Alu 1 296 -6 808 330 88 40 chr4 105887025 105887533 -96440814 - L2 LINE L2 -1008 2306 1753 223 268 35 106 chr4 105888239 105888437 -96439910 - L2 LINE L2 -1586 1728 1545 551 342 25 4 chr4 105888447 105888690 -96439657 - MIR SINE MIR -14 248 1 1156 266 106 38 chr4 105888868 105889555 -96438792 + L2 LINE L2 2596 3313 0 207 343 101 10 chr4 105890380 105890479 -96437868 + MER5A DNA MER1_type 63 170 -19 24 0 0 0 chr4 105891019 105891043 -96437304 + AT_rich Low_complexity Low_complexity 1 24 0 389 205 48 0 chr4 105891309 105891392 -96436955 + MER5A DNA MER1_type 26 112 -77 2525 221 99 32 chr4 105891752 105892473 -96435874 - L1ME2 LINE L1 -11 6153 5482 270 0 0 0 chr4 105892473 105892503 -96435844 + (TG)n Simple_repeat Simple_repeat 1 30 0 2525 221 99 32 chr4 105892503 105892548 -96435799 - L1ME2 LINE L1 -682 5482 5441 1207 261 115 65 chr4 105892548 105892639 -96435708 + MLT1G1 LTR MaLR 1 86 -509 2027 117 3 60 chr4 105892639 105892956 -96435391 - AluSg SINE Alu -11 299 1 1207 261 115 65 chr4 105892956 105893431 -96434916 + MLT1G1 LTR MaLR 86 595 0 660 246 48 0 chr4 105893700 105893867 -96434480 - MER58B DNA MER1_type 0 341 167 2219 162 111 12 chr4 105893876 105894290 -96434057 + MSTB2 LTR MaLR 3 457 0 414 271 45 85 chr4 105894329 105894506 -96433841 + MLT1G1-int LTR MaLR 436 605 -766 1591 174 25 59 chr4 105894609 105894930 -96433417 - AluJo SINE Alu -2 310 1 272 308 90 13 chr4 105895238 105895394 -96432953 + MLT1G1-int LTR MaLR 1563 1730 -5 1201 284 96 29 chr4 105895400 105895921 -96432426 + MLT1G1 LTR MaLR 1 595 0 1663 277 85 8 chr4 105895921 105896387 -96431960 - L1ME2 LINE L1 -810 5336 4785 2325 74 7 3 chr4 105896387 105896685 -96431662 + AluSp SINE Alu 1 299 -14 1663 277 85 8 chr4 105896685 105896994 -96431353 - L1ME2 LINE L1 -1361 4785 4501 3110 280 110 20 chr4 105897003 105898716 -96429631 - L1ME2 LINE L1 -2045 4101 2234 1629 133 3 5 chr4 105899516 105899795 -96428552 - L1PA8A LINE L1 -299 5832 5551 1410 113 13 4 chr4 105899795 105900016 -96428331 + L1MA2 LINE L1 6074 6304 0 215 269 20 128 chr4 105900128 105900277 -96428070 + L2 LINE L2 2950 3082 -190 286 346 23 31 chr4 105900650 105900780 -96427567 + L2 LINE L2 3126 3254 -18 573 254 0 8 chr4 105902617 105902739 -96425608 - MIR SINE MIR -111 151 31 14010 199 44 9 chr4 105903113 105906643 -96421704 + L1PB1 LINE L1 6 3414 -3453 186 43 0 0 chr4 105906643 105906666 -96421681 + (CAA)n Simple_repeat Simple_repeat 2 24 0 14010 199 44 9 chr4 105906666 105909589 -96418758 + L1PB1 LINE L1 3414 6867 0 554 258 139 79 chr4 105909760 105910178 -96418169 + MLT1J2 LTR MaLR 1 443 -7 203 184 26 0 chr4 105911933 105911971 -96416376 - MIR SINE MIR -6 256 218 * 265 365 35 0 chr4 105911964 105912079 -96416268 - L2 LINE L2 0 3313 3195 281 338 15 38 chr4 105912130 105912263 -96416084 - MIR SINE MIR -58 150 21 677 292 111 47 chr4 105912692 105912742 -96415605 + L3 LINE CR1 519 564 -1013 1721 194 3 25 chr4 105912742 105913061 -96415286 + AluJb SINE Alu 1 312 0 677 292 111 47 chr4 105913061 105913436 -96414911 + L3 LINE CR1 564 977 -600 2193 80 0 35 chr4 105913436 105913750 -96414597 + AluY SINE Alu 1 303 -8 677 292 111 47 chr4 105913750 105913775 -96414572 + L3 LINE CR1 977 999 -578 347 286 0 0 chr4 105913868 105913959 -96414388 + L2 LINE L2 3223 3313 0 201 350 142 8 chr4 105913997 105914243 -96414104 + L3 LINE CR1 1210 1488 -89 424 322 41 0 chr4 105914749 105914870 -96413477 + L2 LINE L2 3141 3266 -6 250 337 29 81 chr4 105915204 105915254 -96413093 - L2 LINE L2 -40 3232 3181 2179 125 0 3 chr4 105915254 105915565 -96412782 + AluSg SINE Alu 1 310 0 250 337 29 81 chr4 105915565 105915686 -96412661 - L2 LINE L2 -91 3181 3070 337 304 80 0 chr4 105915938 105916063 -96412284 - MIR SINE MIR -111 151 17 537 301 92 21 chr4 105916760 105916999 -96411348 + MIR SINE MIR 7 262 0 719 236 0 36 chr4 105917597 105917762 -96410585 + FRAM SINE Alu 1 159 -7 422 273 108 17 chr4 105917829 105918060 -96410287 - MER97c DNA MER1_type? -1 1089 838 362 241 45 9 chr4 105918144 105918256 -96410091 - MER97b DNA MER1_type? -491 562 447 623 260 25 59 chr4 105918292 105918496 -96409851 - MER63A DNA MER1_type -11 199 3 430 273 52 32 chr4 105918502 105918656 -96409691 - MER97c DNA MER1_type? -650 440 284 248 265 0 0 chr4 105918686 105918754 -96409593 - MER97c DNA MER1_type? -938 152 85 1627 263 42 28 chr4 105918806 105919422 -96408925 - L1ME1 LINE L1 -54 6112 5488 441 277 50 19 chr4 105920220 105920379 -96407968 + MER97b DNA MER1_type? 888 1051 -2 776 203 6 40 chr4 105920437 105920614 -96407733 - FRAM SINE Alu -2 174 4 243 88 0 0 chr4 105920827 105920861 -96407486 + (CA)n Simple_repeat Simple_repeat 1 34 0 376 261 26 59 chr4 105920917 105921070 -96407277 + L2 LINE L2 3158 3305 -8 469 262 0 0 chr4 105921111 105921214 -96407133 + L2 LINE L2 3207 3309 -4 544 278 107 67 chr4 105922006 105922118 -96406229 - L2 LINE L2 -549 2765 2659 1481 190 32 64 chr4 105922118 105922492 -96405855 - MLT1A1 LTR MaLR 0 365 4 544 278 107 67 chr4 105922492 105922829 -96405518 - L2 LINE L2 -655 2659 2298 486 335 74 26 chr4 105922805 105923035 -96405312 - MIR SINE MIR -18 244 4 * 943 249 148 20 chr4 105923057 105923463 -96404884 - MER69 DNA AcHobo -5 2521 2064 282 362 16 0 chr4 105923494 105923621 -96404726 - MER69 DNA AcHobo -1096 130 2 1446 151 106 90 chr4 105924940 105925297 -96403050 + MLT1A1 LTR MaLR 1 363 -2 367 164 16 0 chr4 105925436 105925497 -96402850 + MLT-int LTR MaLR 680 741 -994 2415 208 15 15 chr4 105925578 105926050 -96402297 + MLT1A1-int LTR MaLR 1263 1734 -1 1861 194 20 3 chr4 105926058 105926408 -96401939 + MLT1A1 LTR MaLR 10 365 0 478 183 17 0 chr4 105927004 105927119 -96401228 + CT-rich Low_complexity Low_complexity 4 120 0 1184 229 60 0 chr4 105927123 105927389 -96400958 - AluJo SINE Alu -30 282 1 459 283 21 0 chr4 105927629 105927774 -96400573 - HAL1b LINE L1 -550 798 651 22 0 0 0 chr4 105927894 105927916 -96400431 + AT_rich Low_complexity Low_complexity 1 22 0 287 293 141 0 chr4 105929166 105929265 -96399082 + MIR SINE MIR 92 204 -58 195 162 27 0 chr4 105929252 105929289 -96399058 - L2 LINE L2 0 3313 3276 * 549 370 52 9 chr4 105929289 105929519 -96398828 - L2 LINE L2 -175 3138 2899 1126 223 28 53 chr4 105929747 105930066 -96398281 - MLT1A1 LTR MaLR 0 365 55 1330 219 121 32 chr4 105930078 105930425 -96397922 + MSTD LTR MaLR 19 396 0 262 182 0 36 chr4 105930425 105930480 -96397867 - MLT1A1 LTR MaLR -375 53 1 705 278 11 0 chr4 105931105 105931292 -96397055 + MER5A DNA MER1_type 1 189 0 217 352 39 16 chr4 105931386 105931514 -96396833 + MIR SINE MIR 110 240 -22 212 217 65 0 chr4 105931513 105931559 -96396788 - L2 LINE L2 -3 3269 3221 * 277 245 113 9 chr4 105931799 105931905 -96396442 - L2 LINE L2 -745 2569 2453 1091 290 113 36 chr4 105933639 105934352 -96393995 + L2 LINE L2 2441 3199 -114 228 35 0 0 chr4 105934513 105934542 -96393805 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 214 306 20 0 chr4 105937350 105937399 -96390948 - L2 LINE L2 -20 3293 3244 358 207 12 0 chr4 105937620 105937702 -96390645 - MER53 DNA DNA -106 83 1 587 316 93 30 chr4 105938527 105938859 -96389488 + MLT1L LTR MaLR 263 615 0 329 380 41 4 chr4 105938994 105939236 -96389111 - LTR16A LTR ERVL -177 273 23 195 254 0 0 chr4 105939255 105939318 -96389029 + (CATA)n Simple_repeat Simple_repeat 3 65 0 583 333 45 0 chr4 105940331 105940529 -96387818 + HERVL LTR ERVL 4134 4340 -1314 403 373 20 35 chr4 105940696 105941042 -96387305 + HERVL LTR ERVL 5011 5351 -413 278 107 5 21 chr4 105941531 105941591 -96386756 - Alu SINE Alu -257 42 1 512 266 53 36 chr4 105941596 105941953 -96386394 - L1M4 LINE L1 -825 5557 5195 298 227 25 25 chr4 105941959 105942077 -96386270 - L1MDa LINE L1 -4902 1480 1285 1820 147 58 0 chr4 105942167 105942557 -96385790 - L1MC/D LINE L1 -743 5403 5187 2702 148 45 0 chr4 105942558 105943023 -96385324 - L1MB3 LINE L1 -41 6142 5657 1627 181 47 49 chr4 105943771 105944136 -96384211 + MLT1A1 LTR MaLR 1 364 -1 212 273 0 73 chr4 105944153 105944208 -96384139 + L2 LINE L2 3126 3176 -96 2417 56 7 3 chr4 105945618 105945924 -96382423 + AluY SINE Alu 1 307 -4 29 28 0 0 chr4 105946094 105946130 -96382217 + AT_rich Low_complexity Low_complexity 1 36 0 314 343 53 6 chr4 105946428 105946597 -96381750 + MIR SINE MIR 86 262 0 35 41 0 0 chr4 105947250 105947299 -96381048 + AT_rich Low_complexity Low_complexity 1 49 0 2361 103 3 0 chr4 105947702 105948014 -96380333 - AluSp SINE Alu 0 313 1 260 347 47 74 chr4 105948308 105948936 -96379411 + L2 LINE L2 2707 3312 -1 234 125 161 0 chr4 105949926 105949982 -96378365 + L1MD2 LINE L1 6282 6346 -13 21 57 0 0 chr4 105950206 105950241 -96378106 + AT_rich Low_complexity Low_complexity 1 35 0 198 0 0 0 chr4 105950781 105950803 -96377544 + (T)n Simple_repeat Simple_repeat 1 22 0 7337 185 25 37 chr4 105950913 105951359 -96376988 + ERVL LTR ERVL 2631 3081 -2683 2486 219 26 0 chr4 105951359 105951866 -96376481 + MLT2B1 LTR ERVL 1 520 0 7337 185 25 37 chr4 105951866 105952799 -96375548 + ERVL LTR ERVL 3081 3994 -1770 26 50 0 0 chr4 105953870 105953910 -96374437 + AT_rich Low_complexity Low_complexity 1 40 0 1648 226 41 72 chr4 105954278 105954773 -96373574 + MLT2B1 LTR ERVL 1 429 -35 183 204 0 0 chr4 105954845 105954899 -96373448 + (TA)n Simple_repeat Simple_repeat 1 54 0 809 274 10 12 chr4 105954974 105955485 -96372862 + HERVL-B1 LTR ERVL 1 587 -5177 * 1282 207 12 4 chr4 105955465 105955711 -96372636 + ERVL LTR ERVL 2235 2482 -3282 1774 205 74 5 chr4 105955931 105956322 -96372025 + L1M3 LINE L1 1 418 -6612 10796 216 52 28 chr4 105956354 105956999 -96371348 + L1M3 LINE L1 3164 3792 -3351 2318 71 7 7 chr4 105956999 105957296 -96371051 - AluY SINE Alu -14 297 1 10796 216 52 28 chr4 105957296 105959069 -96369278 + L1M3 LINE L1 3792 5738 -1405 387 93 0 0 chr4 105959069 105959123 -96369224 - MADE1 DNA Mariner 0 80 27 10796 216 52 28 chr4 105959123 105959866 -96368481 + L1M3 LINE L1 5738 6461 -682 17851 183 45 18 chr4 105960027 105962137 -96366210 + L1MA1 LINE L1 209 2261 -5304 212 57 0 29 chr4 105962137 105962172 -96366175 + (CAAAA)n Simple_repeat Simple_repeat 5 38 0 17851 183 45 18 chr4 105962172 105964417 -96363930 + L1MA1 LINE L1 2261 4678 -2887 778 123 8 0 chr4 105964418 105964582 -96363765 + AluSg/x SINE Alu 187 351 0 6369 167 24 3 chr4 105964583 105965201 -96363146 + L1MA1 LINE L1 5472 6075 -1648 180 0 0 0 chr4 105965201 105965221 -96363126 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 6369 167 24 3 chr4 105965221 105966210 -96362137 + L1MA1 LINE L1 6075 7118 -605 2062 108 3 35 chr4 105966201 105966542 -96361805 + L1MA1 LINE L1 7326 7655 -66 * 2232 105 3 3 chr4 105967134 105967438 -96360909 - AluSx SINE Alu -8 304 1 2077 138 38 58 chr4 105968855 105969253 -96359094 - MLT1B LTR MaLR 0 390 1 2096 235 79 71 chr4 105969253 105970596 -96357751 - MLT1B-int LTR MaLR -1 1370 1 1759 158 45 65 chr4 105970596 105970994 -96357353 - MLT1B LTR MaLR 0 390 1 347 292 140 17 chr4 105971120 105971356 -96356991 + L1ME4a LINE L1 5850 6114 -7 27 0 0 0 chr4 105971356 105971383 -96356964 + AT_rich Low_complexity Low_complexity 1 27 0 378 192 0 39 chr4 105972767 105972897 -96355450 + (TA)n Simple_repeat Simple_repeat 1 125 0 24 32 0 0 chr4 105972912 105972943 -96355404 + AT_rich Low_complexity Low_complexity 1 31 0 403 148 0 49 chr4 105973290 105973371 -96354976 + MLT1B LTR MaLR 145 221 -169 951 274 55 63 chr4 105973784 105974273 -96354074 + MLT1D LTR MaLR 21 505 0 335 290 84 30 chr4 105974408 105974539 -96353808 + MIR SINE MIR 76 213 -49 3847 155 12 91 chr4 105974551 105975570 -96352777 - pTR5 LTR ERV1 0 2606 1524 2634 166 33 28 chr4 105975576 105976186 -96352161 - pTR5 LTR ERV1 -1085 1353 741 2385 184 40 19 chr4 105976872 105977583 -96350764 - L1M3 LINE L1 -682 5501 4775 3236 133 26 41 chr4 105977685 105978219 -96350128 - LTR9B LTR ERV1 -87 557 30 2428 91 0 0 chr4 105978219 105978527 -96349820 - AluY SINE Alu -3 308 1 3236 133 26 41 chr4 105978527 105978557 -96349790 - LTR9B LTR ERV1 -614 30 1 17213 106 50 32 chr4 105978558 105981209 -96347138 - HUERS-P3b LTR ERV1 -7 7411 4713 320 67 22 0 chr4 105981200 105981245 -96347102 - HUERS-P3b LTR ERV1 -3544 3874 3829 * 6630 71 1 1 chr4 105981245 105982099 -96346248 - L1PA7 LINE L1 -26 6128 5275 692 103 10 0 chr4 105982106 105982203 -96346144 + L1PA13 LINE L1 3763 3860 -2286 7838 169 6 73 chr4 105982420 105983975 -96344372 + L1PA13 LINE L1 3863 5521 -642 1857 125 24 28 chr4 105983975 105984262 -96344085 + AluSx SINE Alu 5 290 -22 7838 169 6 73 chr4 105984262 105984356 -96343991 + L1PA13 LINE L1 5521 5620 -543 2031 106 7 7 chr4 105984356 105984640 -96343707 + AluSx SINE Alu 5 288 -24 7838 169 6 73 chr4 105984640 105985338 -96343009 + L1PA13 LINE L1 5620 6162 -1 337 379 48 16 chr4 105985577 105985828 -96342519 + L2 LINE L2 2183 2441 -873 21 36 0 0 chr4 105985897 105985925 -96342422 + AT_rich Low_complexity Low_complexity 1 28 0 265 328 222 23 chr4 105986293 105986464 -96341883 - L2 LINE L2 -222 3091 2887 567 160 17 34 chr4 105987767 105987886 -96340461 + L1M4 LINE L1 5636 5752 -426 372 94 3 30 chr4 105987898 105987965 -96340382 - MLT2D LTR ERVL -358 56 5 647 223 54 6 chr4 105987968 105988134 -96340213 - ERVL-D LTR ERVL -6 5758 5585 2359 100 12 6 chr4 105988134 105988473 -96339874 + THE1C LTR MaLR 1 341 -34 327 333 21 0 chr4 105989066 105989162 -96339185 + L2 LINE L2 3205 3302 -11 228 248 26 0 chr4 105989556 105989673 -96338674 + CT-rich Low_complexity Low_complexity 58 177 0 300 111 0 0 chr4 105989700 105989745 -96338602 + (TC)n Simple_repeat Simple_repeat 2 46 0 195 146 0 0 chr4 105989744 105989785 -96338562 + (TA)n Simple_repeat Simple_repeat 2 42 0 * 307 293 52 9 chr4 105989796 105989912 -96338435 - L1MC4 LINE L1 -1336 6706 6586 927 141 11 11 chr4 105989912 105990266 -96338081 + (TA)n Simple_repeat Simple_repeat 1 355 0 1219 158 38 29 chr4 105990381 105990621 -96337726 - L1PA15 LINE L1 0 6165 5924 261 0 0 0 chr4 105990995 105991024 -96337323 + (T)n Simple_repeat Simple_repeat 1 29 0 506 312 40 28 chr4 105991548 105991801 -96336546 - L1MC4 LINE L1 -2013 5795 5540 200 277 0 21 chr4 105996688 105996735 -96331612 + MIR SINE MIR 31 76 -132 2375 70 0 7 chr4 105996843 105997141 -96331206 - AluSc SINE Alu -13 296 1 22 0 0 0 chr4 105998628 105998650 -96329697 + AT_rich Low_complexity Low_complexity 1 22 0 311 313 164 10 chr4 105998977 105999172 -96329175 + MIR SINE MIR 32 256 -6 296 318 127 8 chr4 105999310 105999436 -96328911 + MIR SINE MIR 110 250 -12 927 287 56 59 chr4 106000424 106001047 -96327300 - L2 LINE L2 -13 3300 2680 282 231 111 34 chr4 106001226 106001343 -96327004 - L2 LINE L2 -671 2643 2518 183 270 48 0 chr4 106002486 106002549 -96325798 - MIR SINE MIR -4 258 193 200 302 0 19 chr4 106002605 106002658 -96325689 - MIR SINE MIR -196 66 15 35 71 0 0 chr4 106003174 106003244 -96325103 + AT_rich Low_complexity Low_complexity 1 70 0 229 286 0 0 chr4 106003961 106004017 -96324330 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 481 333 12 30 chr4 106004615 106004783 -96323564 + L3 LINE CR1 1042 1206 -371 201 357 14 63 chr4 106004756 106004899 -96323448 + MIR SINE MIR 6 141 -121 * 27 0 0 0 chr4 106004983 106005010 -96323337 + AT_rich Low_complexity Low_complexity 1 27 0 553 345 64 29 chr4 106005056 106005369 -96322978 + L3 LINE CR1 1249 1572 -5 677 316 82 17 chr4 106005934 106006225 -96322122 + L3 LINE CR1 971 1280 -297 184 414 0 11 chr4 106006262 106006349 -96321998 + L3 LINE CR1 1385 1470 -107 220 269 0 77 chr4 106006452 106006530 -96321817 + L3 LINE CR1 1047 1118 -459 2352 262 75 10 chr4 106007028 106007823 -96320524 - L1ME3A LINE L1 -6 6164 5318 434 198 17 0 chr4 106007838 106007954 -96320393 - L1ME3A LINE L1 -923 5223 5106 361 177 0 21 chr4 106009941 106010037 -96318310 + (TA)n Simple_repeat Simple_repeat 1 94 0 407 333 160 9 chr4 106010558 106010876 -96317471 + L2 LINE L2 2610 2975 -339 19529 38 2 1 chr4 106011046 106013469 -96314878 - L1PA4 LINE L1 -983 5163 2740 7236 38 10 0 chr4 106013469 106014461 -96313886 + L1PA4 LINE L1 5155 6155 0 217 260 0 0 chr4 106015165 106015215 -96313132 + L2 LINE L2 3264 3313 0 492 274 109 39 chr4 106015877 106016107 -96312240 - MIR SINE MIR 0 262 17 391 185 0 25 chr4 106016382 106016463 -96311884 - MER116 DNA Mariner 0 80 2 295 242 6 157 chr4 106017358 106017536 -96310811 - MIR SINE MIR -32 230 80 1317 173 24 147 chr4 106018207 106018630 -96309717 - MLT1A2 LTR MaLR 0 374 4 22 56 0 0 chr4 106019586 106019622 -96308725 + AT_rich Low_complexity Low_complexity 1 36 0 846 133 25 107 chr4 106020109 106020261 -96308086 + LTR46 LTR ERV1 1 135 -325 2269 107 0 0 chr4 106020261 106020571 -96307776 - AluSg SINE Alu 0 310 1 846 133 25 107 chr4 106020571 106020614 -96307733 + LTR46 LTR ERV1 135 180 -280 * 1991 125 12 18 chr4 106020603 106020939 -96307408 + LTR46 LTR ERV1 127 460 0 210 105 0 0 chr4 106021229 106021267 -96307080 + (T)n Simple_repeat Simple_repeat 1 38 0 4906 4 0 0 chr4 106021292 106021840 -96306507 - L1PA2 LINE L1 -2 6153 5606 21 0 0 0 chr4 106021866 106021887 -96306460 + AT_rich Low_complexity Low_complexity 1 21 0 1614 223 14 22 chr4 106022317 106022685 -96305662 - MLT1A1 LTR MaLR 0 365 1 237 311 49 66 chr4 106022953 106023136 -96305211 + LTR67 LTR ERVL 347 526 -31 326 323 52 32 chr4 106023445 106023600 -96304747 - L2 LINE L2 0 3272 3115 840 264 21 0 chr4 106023604 106023797 -96304550 - MER82 DNA MER2_type -1 652 456 200 364 38 15 chr4 106024254 106024386 -96303961 - L2 LINE L2 -439 2875 2741 2205 68 4 0 chr4 106024638 106024966 -96303381 + AluY SINE Alu 1 329 0 84 52 0 29 chr4 106025030 106025204 -96303143 + AT_rich Low_complexity Low_complexity 1 169 0 21 71 0 0 chr4 106025422 106025464 -96302883 + AT_rich Low_complexity Low_complexity 1 42 0 398 260 130 35 chr4 106025493 106025693 -96302654 - L1ME1 LINE L1 -98 6068 5850 906 299 36 46 chr4 106025761 106026283 -96302064 - L1MEc LINE L1 -5522 874 358 3902 127 58 61 chr4 106026511 106027298 -96301049 + LTR1 LTR ERV1 1 785 0 251 295 39 16 chr4 106027298 106027427 -96300920 - L1MEc LINE L1 -6191 205 74 2261 252 34 18 chr4 106027475 106028212 -96300135 - L1M4c LINE L1 -4536 2423 1675 * 5833 168 32 12 chr4 106028211 106030239 -96298108 + L1PA16 LINE L1 4085 6157 -9 24 77 0 0 chr4 106030239 106030291 -96298056 + AT_rich Low_complexity Low_complexity 1 52 0 742 212 0 6 chr4 106030331 106030496 -96297851 - L1M4c LINE L1 -5200 1659 1496 367 188 0 0 chr4 106030493 106030562 -96297785 - L1M4 LINE L1 -1319 4891 4823 * 714 191 69 0 chr4 106030583 106030787 -96297560 - L1M4 LINE L1 -1637 4573 4356 293 109 0 0 chr4 106031110 106031156 -96297191 + L1PA14 LINE L1 5866 5911 -250 * 6937 218 50 5 chr4 106031153 106032972 -96295375 - L1M4 LINE L1 -1818 4392 2493 3049 255 37 13 chr4 106032967 106033837 -96294510 - L1M4 LINE L1 -5200 941 1 * 26 50 0 0 chr4 106033877 106033917 -96294430 + AT_rich Low_complexity Low_complexity 1 40 0 874 248 30 47 chr4 106033973 106034207 -96294140 + MIR SINE MIR 8 237 -25 21 57 0 0 chr4 106034212 106034247 -96294100 + AT_rich Low_complexity Low_complexity 1 35 0 199 347 13 0 chr4 106034341 106034416 -96293931 - MIR SINE MIR -135 127 52 581 215 7 37 chr4 106034477 106034497 -96293850 + AluJb SINE Alu 117 136 -176 1953 162 3 0 chr4 106034497 106034800 -96293547 + AluSx SINE Alu 1 304 -8 581 215 7 37 chr4 106034800 106034914 -96293433 + AluJb SINE Alu 136 247 -65 459 100 40 3 chr4 106035511 106035763 -96292584 + AluY SINE Alu 2 335 0 307 214 107 9 chr4 106036266 106036378 -96291969 - L1ME4a LINE L1 -74 6047 5925 291 309 19 8 chr4 106037361 106037499 -96290848 - L1ME4a LINE L1 -485 5679 5539 586 241 14 70 chr4 106037519 106037650 -96290697 - L1ME LINE L1 -303 5818 5710 2106 122 73 15 chr4 106037650 106037993 -96290354 + THE1B LTR MaLR 1 363 -1 586 241 14 70 chr4 106037993 106038147 -96290200 - L1ME LINE L1 -411 5710 5549 227 361 0 12 chr4 106038175 106038258 -96290089 - L2 LINE L2 -5 3308 3227 27 49 0 0 chr4 106039993 106040034 -96288313 + AT_rich Low_complexity Low_complexity 1 41 0 412 299 0 0 chr4 106040198 106040285 -96288062 - L2 LINE L2 0 3272 3186 1461 184 10 16 chr4 106041622 106041926 -96286421 + MER33 DNA MER1_type 1 302 -22 344 161 0 0 chr4 106042032 106042088 -96286259 - MLT2A2 LTR ERVL 0 453 398 2425 131 32 25 chr4 106042143 106042645 -96285702 - MLT2A2 LTR ERVL -40 514 1 429 300 88 44 chr4 106042678 106042928 -96285419 + MIR SINE MIR 2 262 0 308 321 66 0 chr4 106043000 106043106 -96285241 + L2 LINE L2 3201 3313 0 203 311 0 94 chr4 106043144 106043250 -96285097 - MIR SINE MIR -118 144 49 25 31 0 0 chr4 106043306 106043338 -96285009 + AT_rich Low_complexity Low_complexity 1 32 0 1968 216 49 5 chr4 106044456 106044881 -96283466 - MLT1C LTR MaLR -6 461 18 211 184 0 0 chr4 106045278 106045316 -96283031 + (CA)n Simple_repeat Simple_repeat 1 38 0 285 29 0 0 chr4 106046125 106046159 -96282188 + (CA)n Simple_repeat Simple_repeat 2 35 0 369 0 0 0 chr4 106046159 106046200 -96282147 + (GA)n Simple_repeat Simple_repeat 1 41 0 31 0 0 0 chr4 106048267 106048298 -96280049 + AT_rich Low_complexity Low_complexity 1 31 0 1988 179 3 3 chr4 106048759 106049094 -96279253 - MLT1A1 LTR MaLR 0 365 31 1449 152 19 46 chr4 106049096 106049294 -96279053 + AluJb SINE Alu 46 237 -75 4096 84 9 0 chr4 106049294 106049841 -96278506 - MER41A LTR ERV1 -2 552 1 1449 152 19 46 chr4 106049841 106049905 -96278442 + AluJb SINE Alu 237 301 -11 341 219 0 14 chr4 106050432 106050505 -96277842 + L2 LINE L2 3188 3259 -54 199 195 0 0 chr4 106051074 106051115 -96277232 + L2 LINE L2 3273 3313 0 475 225 83 0 chr4 106052461 106052581 -96275766 + FLAM_C SINE Alu 3 132 -1 217 300 0 0 chr4 106053367 106053417 -96274930 + L2 LINE L2 2694 2743 -571 27 0 0 0 chr4 106053814 106053841 -96274506 + AT_rich Low_complexity Low_complexity 1 27 0 210 336 146 18 chr4 106054282 106054392 -96273955 + L2 LINE L2 3149 3272 0 192 40 0 0 chr4 106054476 106054501 -96273846 + (CA)n Simple_repeat Simple_repeat 1 25 0 1522 126 30 15 chr4 106054875 106055144 -96273203 - L1PA16 LINE L1 -7 6159 5887 239 361 82 22 chr4 106055943 106056212 -96272135 - LTR16B LTR ERVL -160 304 20 1461 169 8 0 chr4 106056224 106056466 -96271881 - AluSg/x SINE Alu 0 312 69 770 304 56 11 chr4 106056545 106056900 -96271447 - L1MC/D LINE L1 -2061 5747 5377 543 259 111 14 chr4 106056923 106057212 -96271135 + L1MC4a LINE L1 5747 6063 -1745 389 275 55 10 chr4 106057241 106057441 -96270906 - L1MC/D LINE L1 -2346 5462 5254 582 307 89 73 chr4 106057445 106058240 -96270107 - L1MC/D LINE L1 -893 5253 4435 1728 132 21 0 chr4 106058240 106058527 -96269820 - L1MA4 LINE L1 -5 6295 6003 582 307 89 73 chr4 106058527 106058698 -96269649 - L1MC/D LINE L1 -1711 4435 4268 803 289 84 52 chr4 106058734 106059583 -96268764 - L1MC/D LINE L1 -1938 4208 3333 348 299 122 49 chr4 106059665 106060010 -96268337 - L1MC/D LINE L1 -2961 3185 2816 2888 201 28 10 chr4 106060172 106060790 -96267557 - Tigger6 DNA MER2_type 0 1597 969 4383 174 33 12 chr4 106061354 106062383 -96265964 - L1MA9 LINE L1 0 6312 5126 1200 221 7 30 chr4 106062383 106062701 -96265646 + L1 LINE L1 3889 4195 -1951 201 222 0 0 chr4 106062701 106062737 -96265610 + polypurine Low_complexity Low_complexity 1 36 0 717 167 0 32 chr4 106062737 106062923 -96265424 + GA-rich Low_complexity Low_complexity 1 180 0 3366 179 36 3 chr4 106063052 106063628 -96264719 - L1PA15-16 LINE L1 -6254 595 1 2166 155 80 2 chr4 106063788 106064201 -96264146 + MER65A LTR ERV1 1 445 0 528 301 54 21 chr4 106064464 106064703 -96263644 + L1ME LINE L1 5551 5797 -373 2809 263 16 6 chr4 106065871 106066583 -96261764 + L1PA15-16 LINE L1 635 1263 -5586 12547 216 26 16 chr4 106066586 106066867 -96261480 + L1PA15-16 LINE L1 744 1021 -5828 1266 153 150 34 chr4 106066867 106067193 -96261154 + THE1B LTR MaLR 1 364 0 12547 216 26 16 chr4 106067193 106067888 -96260459 + L1PA15-16 LINE L1 1021 1708 -5141 1976 139 7 0 chr4 106067888 106068182 -96260165 + AluSx SINE Alu 1 296 -16 12547 216 26 16 chr4 106068182 106071820 -96256527 + L1PA15-16 LINE L1 1708 5412 -1437 4026 180 67 21 chr4 106071828 106071955 -96256392 - L1 LINE L1 -1027 5119 4999 1652 191 3 13 chr4 106071955 106072259 -96256088 - AluJo SINE Alu -9 303 3 4026 180 67 21 chr4 106072259 106073046 -96255301 - L1 LINE L1 -1147 4999 4163 390 42 0 0 chr4 106073046 106073094 -96255253 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 478 292 50 9 chr4 106073229 106073448 -96254899 - Tigger6 DNA MER2_type -1299 298 71 2156 96 3 43 chr4 106073526 106073850 -96254497 - AluY SINE Alu 0 311 1 571 252 0 0 chr4 106073974 106074089 -96254258 - FAM SINE Alu -70 115 1 3406 15 0 0 chr4 106074363 106074956 -96253391 - L1PA2 LINE L1 -576 5579 4987 5182 7 0 0 chr4 106074956 106075538 -96252809 + L1PA2 LINE L1 5571 6152 -3 2222 104 64 0 chr4 106076124 106076469 -96251878 - L1PB1 LINE L1 -1 6150 5784 438 176 11 0 chr4 106076469 106076547 -96251800 + L1MB1 LINE L1 6077 6168 0 342 307 100 0 chr4 106078771 106078911 -96249436 + MIR SINE MIR 87 240 -22 695 316 32 9 chr4 106079047 106079265 -96249082 + MIR SINE MIR 30 252 -10 3109 253 79 97 chr4 106079492 106080080 -96248267 + L1ME LINE L1 98 695 -5385 2390 84 0 0 chr4 106080080 106080390 -96247957 + AluY SINE Alu 1 310 -1 3109 253 79 97 chr4 106080390 106082348 -96245999 + L1ME LINE L1 695 2688 -3392 1822 195 53 82 chr4 106082348 106082875 -96245472 + MLT2B2 LTR ERVL 4 515 0 3109 253 79 97 chr4 106082875 106083653 -96244694 + L1ME LINE L1 2688 3479 -2601 2014 128 7 13 chr4 106083653 106083957 -96244390 + AluSx SINE Alu 1 302 -10 3109 253 79 97 chr4 106083957 106084751 -96243596 + L1ME LINE L1 3479 4511 -1569 1594 196 66 43 chr4 106084751 106085266 -96243081 - Charlie1 DNA MER1_type 0 2761 2235 2831 188 30 6 chr4 106085728 106086264 -96242083 + MER44D DNA MER2_type 1 604 -1 27 29 0 0 chr4 106086583 106086617 -96241730 + AT_rich Low_complexity Low_complexity 1 34 0 203 229 33 0 chr4 106087514 106087575 -96240772 + (TATATG)n Simple_repeat Simple_repeat 4 66 0 495 231 70 13 chr4 106088738 106088894 -96239453 - MER3 DNA MER1_type 0 209 45 2029 219 37 15 chr4 106089746 106090203 -96238144 + MLT1C LTR MaLR 1 467 0 433 294 68 85 chr4 106090520 106091119 -96237228 + HAL1b LINE L1 14 602 -746 1708 38 0 0 chr4 106091210 106091420 -96236927 + L1PA4 LINE L1 5941 6150 -5 197 33 33 0 chr4 106091814 106091844 -96236503 + (TC)n Simple_repeat Simple_repeat 1 31 0 342 0 0 0 chr4 106091845 106091883 -96236464 + (CA)n Simple_repeat Simple_repeat 1 38 0 183 42 0 0 chr4 106093143 106093167 -96235180 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 198 0 0 0 chr4 106094846 106094868 -96233479 + (A)n Simple_repeat Simple_repeat 1 22 0 971 255 14 0 chr4 106095285 106095501 -96232846 + MER20 DNA MER1_type 1 219 0 332 304 51 14 chr4 106095673 106095692 -96232655 + L2 LINE L2 3171 3188 -125 194 0 39 0 chr4 106095692 106095718 -96232629 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 332 304 51 14 chr4 106095718 106095836 -96232511 + L2 LINE L2 3188 3313 0 1026 239 4 32 chr4 106096125 106096372 -96231975 + MIR SINE MIR 15 254 -8 21 0 0 0 chr4 106096872 106096893 -96231454 + AT_rich Low_complexity Low_complexity 1 21 0 715 226 124 0 chr4 106097309 106097495 -96230852 + MER3 DNA MER1_type 1 209 0 249 167 0 0 chr4 106097590 106097644 -96230703 + CT-rich Low_complexity Low_complexity 1 54 0 300 137 0 0 chr4 106097651 106097702 -96230645 + (CA)n Simple_repeat Simple_repeat 1 51 0 240 349 34 0 chr4 106100042 106100188 -96228159 - MER103 DNA DNA -13 153 3 956 261 41 32 chr4 106100275 106100620 -96227727 + MLT1I LTR MaLR 39 386 -23 956 236 5 0 chr4 106101711 106101914 -96226433 - MER3 DNA MER1_type 0 209 6 1664 111 0 0 chr4 106101980 106102196 -96226151 + AluSg/x SINE Alu 75 290 -22 11044 184 16 5 chr4 106102276 106104064 -96224283 + L1PA15-16 LINE L1 633 2561 -4288 551 0 0 0 chr4 106104064 106104156 -96224191 + L1PA3 LINE L1 6082 6173 0 11044 184 16 5 chr4 106104156 106104446 -96223901 + L1PA15-16 LINE L1 2561 2846 -4003 6553 118 71 44 chr4 106104447 106106330 -96222017 + MER4-int LTR ERV1 1439 4858 -1740 1669 162 55 4 chr4 106106330 106106632 -96221715 - AluSx SINE Alu 0 316 1 6553 118 71 44 chr4 106106632 106106809 -96221538 + MER4-int LTR ERV1 4858 5029 -1569 3436 164 62 21 chr4 106106810 106108152 -96220195 + L1MCa LINE L1 1054 2545 -3881 10752 146 30 4 chr4 106108152 106109928 -96218419 + Tigger1 DNA MER2_type 2 1823 -595 7113 142 16 8 chr4 106109941 106110161 -96218186 + L1MA1 LINE L1 3979 4196 -2106 1759 77 0 0 chr4 106110161 106110381 -96217966 - AluY SINE Alu -9 302 83 7113 142 16 8 chr4 106110381 106112464 -96215883 + L1MA1 LINE L1 4196 6301 -1 667 253 48 0 chr4 106112452 106112681 -96215666 + L1MCa LINE L1 3833 4072 -2354 * 2018 178 39 30 chr4 106112681 106113223 -96215124 - MLT2A2 LTR ERVL 0 554 1 5323 237 28 6 chr4 106113234 106114681 -96213666 + L1MCa LINE L1 4078 5557 -869 15784 157 49 6 chr4 106114703 106118035 -96210312 + L1PB1 LINE L1 2 3476 -3386 22 35 0 0 chr4 106119626 106119655 -96208692 + AT_rich Low_complexity Low_complexity 1 29 0 11139 185 15 16 chr4 106119910 106123297 -96205050 + L1PB1 LINE L1 3462 6846 -21 1626 114 6 111 chr4 106123330 106123646 -96204701 + L1MC1 LINE L1 6050 6332 -1 453 337 94 21 chr4 106123824 106124153 -96204194 + L1M4 LINE L1 3484 3836 -2310 259 325 77 5 chr4 106124206 106124400 -96203947 + L1M4 LINE L1 3629 3836 -2310 379 341 68 24 chr4 106124453 106124922 -96203425 + L1MC/D LINE L1 3629 4118 -2028 324 105 18 70 chr4 106124945 106125002 -96203345 + tRNA-Gly-GGG tRNA tRNA 4 57 -17 370 298 41 45 chr4 106125006 106125251 -96203096 + L1MC/D LINE L1 4150 4393 -1753 226 256 12 12 chr4 106125253 106125339 -96203008 + (TA)n Simple_repeat Simple_repeat 2 87 0 573 273 71 105 chr4 106125816 106125925 -96202422 - MLT1J2 LTR MaLR 0 450 339 4037 21 4 0 chr4 106125925 106126399 -96201948 - L1PA4 LINE L1 -3 6152 5677 573 273 71 105 chr4 106126399 106126755 -96201592 - MLT1J2 LTR MaLR -111 339 1 433 243 183 12 chr4 106127047 106127216 -96201131 + MIR SINE MIR 29 226 -36 513 71 0 0 chr4 106127226 106127296 -96201051 + (CAT)n Simple_repeat Simple_repeat 2 71 0 198 0 0 0 chr4 106127728 106127750 -96200597 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 262 111 22 0 chr4 106128376 106128421 -96199926 + MADE1 DNA Mariner 1 46 -34 553 309 25 33 chr4 106128462 106128543 -96199804 + L1MC/D LINE L1 5527 5607 -2201 2212 101 0 3 chr4 106128543 106128841 -96199506 + AluSg SINE Alu 1 297 -13 553 309 25 33 chr4 106128841 106129034 -96199313 + L1MC/D LINE L1 5607 5799 -2009 579 201 6 79 chr4 106129057 106129221 -96199126 - L2 LINE L2 0 3313 3162 21 57 0 0 chr4 106129678 106129713 -96198634 + AT_rich Low_complexity Low_complexity 1 35 0 284 333 130 6 chr4 106130510 106130672 -96197675 - MIR3 SINE MIR -5 203 22 699 264 41 51 chr4 106131073 106131365 -96196982 - LTR16A1 LTR ERVL -9 448 160 250 306 9 9 chr4 106131702 106131813 -96196534 + (TA)n Simple_repeat Simple_repeat 1 111 0 32 57 0 0 chr4 106132390 106132443 -96195904 + AT_rich Low_complexity Low_complexity 1 53 0 497 292 65 11 chr4 106132826 106133011 -96195336 + MER91A DNA MER1_type 2 196 0 423 68 0 0 chr4 106133193 106133252 -96195095 + (CA)n Simple_repeat Simple_repeat 2 60 0 223 167 0 0 chr4 106134005 106134047 -96194300 + (CA)n Simple_repeat Simple_repeat 1 42 0 1656 149 87 12 chr4 106135897 106136219 -96192128 - MER7A DNA MER2_type 0 346 3 649 324 102 30 chr4 106136388 106136759 -96191588 + LTR33 LTR ERVL 122 519 -2 595 305 30 25 chr4 106136763 106136960 -96191387 - MIR3 SINE MIR -10 198 1 216 378 17 41 chr4 106137359 106137531 -96190816 + MIR3 SINE MIR 38 205 -3 21 57 0 0 chr4 106137574 106137609 -96190738 + AT_rich Low_complexity Low_complexity 1 35 0 385 272 133 33 chr4 106137976 106138156 -96190191 + MIR SINE MIR 23 220 -42 305 279 58 19 chr4 106138142 106138246 -96190101 + L2 LINE L2 3202 3309 -4 * 872 331 48 15 chr4 106138603 106138996 -96189351 - MLT1I LTR MaLR 0 409 4 261 83 0 0 chr4 106139094 106139130 -96189217 + (T)n Simple_repeat Simple_repeat 1 36 0 217 222 16 79 chr4 106139135 106139261 -96189086 + GA-rich Low_complexity Low_complexity 5 122 0 184 333 58 0 chr4 106139461 106139530 -96188817 - MIR SINE MIR -90 172 100 273 196 0 0 chr4 106141042 106141098 -96187249 + (TA)n Simple_repeat Simple_repeat 1 56 0 496 255 168 12 chr4 106141120 106141281 -96187066 + MER5A DNA MER1_type 1 186 -3 394 262 285 0 chr4 106141565 106141737 -96186610 - MIR SINE MIR -5 257 37 319 65 22 0 chr4 106141859 106141905 -96186442 - MADE1 DNA Mariner -28 52 6 2300 109 0 10 chr4 106142415 106142726 -96185621 - AluSx SINE Alu -4 308 1 22 0 0 0 chr4 106143657 106143679 -96184668 + AT_rich Low_complexity Low_complexity 1 22 0 390 294 27 39 chr4 106144074 106144313 -96184034 + L2 LINE L2 2792 3029 -284 540 277 7 19 chr4 106144755 106144910 -96183437 + MIR SINE MIR 110 262 0 454 278 0 0 chr4 106145289 106145404 -96182943 + MLT1I LTR MaLR 293 407 -2 364 209 16 93 chr4 106145625 106145807 -96182540 - MER20B DNA MER1_type -74 709 542 988 69 0 0 chr4 106145881 106146011 -96182336 + L1PA5 LINE L1 6022 6151 -3 894 251 53 50 chr4 106146307 106146688 -96181659 + L1ME1 LINE L1 5785 6104 -62 1409 189 44 31 chr4 106146695 106146737 -96181610 - MLT2D LTR ERVL 0 414 374 306 0 0 0 chr4 106146737 106146771 -96181576 + (TG)n Simple_repeat Simple_repeat 2 35 0 1409 189 44 31 chr4 106146771 106147076 -96181271 - MLT2D LTR ERVL -40 374 65 274 167 21 0 chr4 106147452 106147500 -96180847 - Tigger6 DNA MER2_type -1028 55 7 894 250 18 5 chr4 106147566 106147790 -96180557 - MER20B DNA MER1_type -284 499 273 238 257 46 46 chr4 106147788 106147897 -96180450 - MER20B DNA MER1_type -658 125 17 * 4338 144 32 31 chr4 106149798 106150582 -96177765 - LTR1 LTR ERV1 0 785 1 450 276 54 44 chr4 106151565 106151768 -96176579 - MIR SINE MIR -24 238 34 412 313 40 0 chr4 106153666 106153816 -96174531 - MER115 DNA AcHobo -96 597 442 24 0 0 0 chr4 106154251 106154275 -96174072 + AT_rich Low_complexity Low_complexity 1 24 0 2282 107 3 0 chr4 106154278 106154586 -96173761 - AluSc SINE Alu 0 309 1 255 301 177 30 chr4 106156020 106156223 -96172124 - MIR SINE MIR -10 252 20 180 125 0 0 chr4 106157129 106157161 -96171186 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 256 320 197 16 chr4 106157323 106157445 -96170902 - L2 LINE L2 0 3272 3129 369 306 109 58 chr4 106157587 106157881 -96170466 - L2 LINE L2 -663 2651 2343 461 274 25 64 chr4 106158104 106158261 -96170086 + LTR67 LTR ERVL 76 226 -331 359 339 98 0 chr4 106158294 106158468 -96169879 + LTR67 LTR ERVL 352 542 -15 21 0 0 0 chr4 106158509 106158530 -96169817 + AT_rich Low_complexity Low_complexity 1 21 0 225 231 144 40 chr4 106160067 106160167 -96168180 - MIR SINE MIR -69 139 44 817 261 9 27 chr4 106160730 106160952 -96167395 + MER58A DNA MER1_type 2 219 -5 1186 193 27 151 chr4 106161687 106161765 -96166582 - Charlie4a DNA MER1_type -1454 507 421 2166 122 7 0 chr4 106161765 106162059 -96166288 - AluSx SINE Alu -16 296 1 1186 193 27 151 chr4 106162059 106162497 -96165850 - Charlie4a DNA MER1_type -1540 421 55 358 338 57 62 chr4 106163114 106163324 -96165023 + MIR SINE MIR 50 258 -4 329 299 110 16 chr4 106165728 106165855 -96162492 + MIR SINE MIR 3 141 -121 225 0 0 0 chr4 106165871 106165896 -96162451 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 276 337 0 20 chr4 106165898 106165999 -96162348 - L2 LINE L2 -15 3298 3200 213 283 115 18 chr4 106165962 106166075 -96162272 + MIR SINE MIR 137 260 -2 * 300 296 10 10 chr4 106166153 106166251 -96162096 + MIR SINE MIR 153 250 -12 2188 130 0 9 chr4 106166484 106166799 -96161548 + AluSx SINE Alu 1 312 0 2670 85 3 0 chr4 106218218 106218572 -96109775 + THE1A LTR MaLR 1 355 0 356 275 46 0 chr4 106218633 106218742 -96109605 - MIR SINE MIR -12 250 137 226 269 15 0 chr4 106220158 106220225 -96108122 + (CA)n Simple_repeat Simple_repeat 1 68 0 258 106 0 0 chr4 106220920 106220967 -96107380 + (A)n Simple_repeat Simple_repeat 1 47 0 464 313 171 5 chr4 106221306 106221517 -96106830 + MIR SINE MIR 7 252 -10 477 266 14 14 chr4 106221560 106221703 -96106644 + HAL1 LINE L1 1469 1611 -896 1141 219 62 119 chr4 106221713 106222189 -96106158 - MER90 LTR ERV1 -4 610 109 210 37 0 0 chr4 106222189 106222216 -96106131 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1935 127 7 0 chr4 106222218 106222493 -96105854 - AluSx SINE Alu -29 283 7 1141 219 62 119 chr4 106222493 106222543 -96105804 - MER90 LTR ERV1 -452 162 111 428 320 13 0 chr4 106222595 106222748 -96105599 + HAL1 LINE L1 1611 1765 -742 312 262 27 81 chr4 106223025 106223174 -96105173 + HAL1b LINE L1 737 877 -471 314 216 0 62 chr4 106223373 106223470 -96104877 + HAL1 LINE L1 2305 2395 -112 1531 152 48 0 chr4 106225673 106225942 -96102405 + L1MA9 LINE L1 5504 5785 -515 622 154 0 0 chr4 106225942 106226046 -96102301 + AluSp/q SINE Alu 207 310 -3 2379 171 32 24 chr4 106226047 106226545 -96101802 + L1MA9 LINE L1 5770 6271 -41 225 174 43 0 chr4 106226804 106226850 -96101497 - L1P LINE L1 -1242 4904 4857 * 5037 147 33 1 chr4 106226847 106227693 -96100654 + L1PA16 LINE L1 5293 6165 -1 2004 117 4 0 chr4 106228939 106229220 -96099127 + AluY SINE Alu 16 297 -14 242 330 28 9 chr4 106230810 106230919 -96097428 - L2 LINE L2 -2 3270 3160 243 259 0 0 chr4 106231104 106231158 -96097189 + MIR SINE MIR 197 250 -12 23 0 0 0 chr4 106233115 106233138 -96095209 + AT_rich Low_complexity Low_complexity 1 23 0 192 125 0 0 chr4 106233581 106233613 -96094734 + (CA)n Simple_repeat Simple_repeat 1 32 0 241 253 25 13 chr4 106234095 106234174 -96094173 + MLT1L LTR MaLR 195 274 -341 225 271 153 24 chr4 106234324 106234409 -96093938 + MLT1J LTR MaLR 321 416 -95 2203 120 27 27 chr4 106234423 106234798 -96093549 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr4 106235767 106235790 -96092557 + AT_rich Low_complexity Low_complexity 1 23 0 2640 194 55 78 chr4 106235847 106236606 -96091741 - L1MA9 LINE L1 -81 6231 5490 311 206 30 36 chr4 106236672 106236837 -96091510 + (TATAA)n Simple_repeat Simple_repeat 3 166 0 396 222 103 0 chr4 106236913 106237030 -96091317 + MER103 DNA DNA 3 131 -35 31 68 0 0 chr4 106237150 106237209 -96091138 + AT_rich Low_complexity Low_complexity 1 59 0 253 347 30 6 chr4 106237209 106237376 -96090971 - HAL1b LINE L1 -606 742 572 728 231 5 0 chr4 106237595 106237781 -96090566 - L1ME1 LINE L1 -267 5899 5713 2066 130 10 0 chr4 106237912 106238211 -96090136 + AluSq SINE Alu 6 307 -6 553 251 32 23 chr4 106238890 106239103 -96089244 - L1MB5 LINE L1 -168 6708 6517 249 83 0 0 chr4 106239104 106239140 -96089207 + (T)n Simple_repeat Simple_repeat 1 36 0 3571 221 45 45 chr4 106239176 106240919 -96087428 - L1MB5 LINE L1 -351 6517 4788 282 318 32 0 chr4 106240915 106241041 -96087306 - L1MB5 LINE L1 -2535 4313 4184 * 1700 178 77 27 chr4 106241046 106241412 -96086935 + L1MC1 LINE L1 5937 6320 -13 25 51 0 0 chr4 106241428 106241467 -96086880 + AT_rich Low_complexity Low_complexity 1 39 0 1976 246 50 12 chr4 106241516 106242200 -96086147 - L1MB5 LINE L1 -2784 4064 3355 * 8712 232 77 22 chr4 106242193 106245578 -96082769 - L1M4c LINE L1 -832 5572 1273 35972 99 11 11 chr4 106245631 106251774 -96076573 - L1PA6 LINE L1 0 6154 10 4276 229 50 16 chr4 106251791 106253116 -96075231 - L1MB5 LINE L1 -4995 1854 649 227 358 11 28 chr4 106253435 106253611 -96074736 - L1MB5 LINE L1 -6674 175 3 * 267 367 42 8 chr4 106253598 106253718 -96074629 - L1PA15-16 LINE L1 -5419 1443 1320 690 332 76 47 chr4 106253737 106254489 -96073858 - L1PA15-16 LINE L1 -5485 1378 605 1105 233 12 92 chr4 106254546 106255023 -96073324 - L1MEc LINE L1 -3486 2729 2330 243 341 44 11 chr4 106256429 106256520 -96071827 - L2 LINE L2 -5 3308 3215 379 341 66 82 chr4 106256695 106257255 -96071092 - L2 LINE L2 -341 2973 2423 206 327 55 9 chr4 106257284 106257394 -96070953 - L2 LINE L2 -975 2339 2225 602 313 76 5 chr4 106257817 106258041 -96070306 - LTR16C LTR ERVL -5 486 247 1084 245 130 119 chr4 106258206 106258913 -96069434 - MER21B LTR ERV1 -128 735 21 1627 164 57 35 chr4 106260849 106261216 -96067131 - THE1C LTR MaLR 0 375 1 256 316 177 45 chr4 106261384 106261650 -96066697 - L2 LINE L2 -454 2860 2560 329 266 18 64 chr4 106261722 106261831 -96066516 - L2 LINE L2 -34 3279 3176 422 284 150 45 chr4 106261885 106262244 -96066103 + LTR16A LTR ERVL 61 457 0 3143 305 98 58 chr4 106262244 106264499 -96063848 + HERV16 LTR ERVL 1 2346 -2650 15112 162 26 13 chr4 106266064 106270550 -96057797 - L1MA3 LINE L1 0 7724 3174 28 0 0 0 chr4 106271042 106271070 -96057277 + AT_rich Low_complexity Low_complexity 1 28 0 681 198 62 17 chr4 106271977 106272154 -96056193 + MER53 DNA DNA 5 189 0 307 327 30 0 chr4 106272459 106272560 -96055787 + L1MEd LINE L1 521 624 -5495 249 350 49 8 chr4 106272581 106272704 -96055643 + MLT1I LTR MaLR 3 130 -279 366 246 254 22 chr4 106273281 106273415 -96054932 + MLT1I LTR MaLR 1 165 -244 517 275 36 58 chr4 106273805 106274169 -96054178 - L1M4 LINE L1 -3314 2832 2477 447 207 59 18 chr4 106274303 106274472 -96053875 + L1M4 LINE L1 2865 3040 -3106 613 274 159 18 chr4 106274663 106274889 -96053458 - MIR SINE MIR 0 262 5 2353 50 0 3 chr4 106276329 106276640 -96051707 + AluY SINE Alu 1 310 0 249 311 179 0 chr4 106277999 106278150 -96050197 + MIR SINE MIR 82 259 -3 364 341 89 17 chr4 106278536 106278715 -96049632 - MIR SINE MIR -51 211 20 1836 173 0 3 chr4 106278801 106279090 -96049257 - AluJo SINE Alu -24 288 1 231 36 0 0 chr4 106279154 106279182 -96049165 + (CA)n Simple_repeat Simple_repeat 1 28 0 183 337 12 23 chr4 106279596 106279682 -96048665 - L2 LINE L2 0 3272 3188 384 357 33 17 chr4 106280004 106280244 -96048103 - MIR SINE MIR -19 243 5 318 311 19 0 chr4 106280278 106280384 -96047963 - LTR16A LTR ERVL -8 442 335 431 331 47 12 chr4 106280436 106280608 -96047739 - LTR16A LTR ERVL -252 198 21 405 222 170 104 chr4 106281815 106281952 -96046395 + Charlie7 DNA MER1_type 227 384 -2228 902 83 8 0 chr4 106281952 106282084 -96046263 + L1PA14 LINE L1 6025 6157 -4 405 222 170 104 chr4 106282084 106282158 -96046189 + Charlie7 DNA MER1_type 384 452 -2160 2250 258 51 26 chr4 106282164 106283001 -96045346 + Charlie7 DNA MER1_type 735 1592 -1020 29275 105 17 49 chr4 106283010 106289427 -96038920 + L1PA7 LINE L1 10 6154 0 1726 218 201 19 chr4 106289536 106290402 -96037945 + Charlie7 DNA MER1_type 1583 2606 -6 273 314 128 13 chr4 106290809 106290965 -96037382 + MIR SINE MIR 13 186 -76 183 188 0 0 chr4 106291127 106291175 -96037172 + CT-rich Low_complexity Low_complexity 2 49 0 8350 253 77 19 chr4 106291214 106293372 -96034975 - L1ME1 LINE L1 -10 6225 4193 285 75 0 0 chr4 106293372 106293412 -96034935 + (TG)n Simple_repeat Simple_repeat 2 41 0 8350 253 77 19 chr4 106293412 106293880 -96034467 - L1ME1 LINE L1 -2042 4193 3753 237 65 0 0 chr4 106293880 106293911 -96034436 + (TA)n Simple_repeat Simple_repeat 1 31 0 8350 253 77 19 chr4 106293911 106294988 -96033359 - L1ME1 LINE L1 -2482 3753 2740 2027 88 4 0 chr4 106294988 106295260 -96033087 + L1PA11 LINE L1 5902 6174 0 8350 253 77 19 chr4 106295260 106295369 -96032978 - L1ME1 LINE L1 -3495 2740 2639 691 241 92 10 chr4 106295369 106295564 -96032783 + MER58C DNA MER1_type 3 213 -2 8350 253 77 19 chr4 106295564 106295758 -96032589 - L1ME1 LINE L1 -3596 2639 1993 1166 294 56 33 chr4 106295774 106296480 -96031867 - L1ME1 LINE L1 -4435 1961 1199 1610 173 44 35 chr4 106296482 106296686 -96031661 + MER2 DNA MER2_type 1 211 -134 1863 127 101 3 chr4 106296686 106296993 -96031354 + MER1B DNA MER1_type 1 337 0 1610 173 44 35 chr4 106296993 106297130 -96031217 + MER2 DNA MER2_type 211 345 0 252 276 23 0 chr4 106297153 106297240 -96031107 - L1ME1 LINE L1 -5219 1177 1089 2559 213 32 22 chr4 106297247 106297800 -96030547 - MER82 DNA MER2_type 0 653 95 1028 222 179 101 chr4 106297800 106298134 -96030213 + MLT1A1 LTR MaLR 1 372 -56 1653 193 3 13 chr4 106298134 106298435 -96029912 - AluJo SINE Alu 0 312 15 1028 222 179 101 chr4 106298435 106298496 -96029851 + MLT1A1 LTR MaLR 372 427 -1 1418 216 40 8 chr4 106298595 106298974 -96029373 - L1ME1 LINE L1 -5334 1062 672 262 313 25 0 chr4 106299134 106299214 -96029133 - L1ME1 LINE L1 -6034 362 281 * 41578 76 9 3 chr4 106299212 106306840 -96021507 + L1PA4 LINE L1 193 6155 0 5688 164 34 1 chr4 106306703 106307717 -96020630 + L1MA6 LINE L1 5254 6300 0 * 198 0 0 0 chr4 106309262 106309284 -96019063 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 227 315 138 15 chr4 106311139 106311269 -96017078 - MIR3 SINE MIR -16 192 47 352 297 25 0 chr4 106311391 106311509 -96016838 + HsTC2 DNA Tc2 1 121 -1777 780 126 0 30 chr4 106311567 106311702 -96016645 + FRAM SINE Alu 41 171 -5 671 242 47 5 chr4 106311706 106311896 -96016451 + HsTC2 DNA Tc2 1528 1725 -173 1995 210 19 93 chr4 106311971 106312561 -96015786 - MLT2B3 LTR ERVL -8 546 1 2171 172 29 22 chr4 106312584 106312996 -96015351 + MSTC LTR MaLR 14 428 0 504 341 6 30 chr4 106313372 106313536 -96014811 + MER91A DNA MER1_type 1 160 -36 2136 92 3 11 chr4 106314434 106314750 -96013597 + AluSc SINE Alu 1 314 0 658 103 0 0 chr4 106314819 106314916 -96013431 + AluSc SINE Alu 213 309 0 201 132 0 0 chr4 106315857 106315895 -96012452 + (CA)n Simple_repeat Simple_repeat 1 38 0 1259 194 44 88 chr4 106317257 106317665 -96010682 - MLT1B LTR MaLR 0 390 1 293 245 177 54 chr4 106318080 106318227 -96010120 + MER20B DNA MER1_type 6 170 -613 223 355 64 43 chr4 106318555 106318748 -96009599 - L2 LINE L2 -222 3050 2844 2134 112 27 0 chr4 106318748 106319043 -96009304 + AluSx SINE Alu 1 303 -9 223 355 64 43 chr4 106319043 106319172 -96009175 - L2 LINE L2 -428 2844 2719 805 295 25 0 chr4 106320576 106320817 -96007530 - MIR SINE MIR -13 249 3 675 204 82 35 chr4 106320926 106321157 -96007190 - L1MD3 LINE L1 0 7995 7754 * 690 233 138 5 chr4 106321134 106321323 -96007024 - L1MC4 LINE L1 -1132 6910 6697 969 192 20 0 chr4 106321332 106321530 -96006817 + L1PBa LINE L1 2 203 -6660 * 3246 145 9 13 chr4 106321525 106322056 -96006291 + L1PBa LINE L1 634 1162 -5701 712 112 0 0 chr4 106322057 106322164 -96006183 + L1PBa LINE L1 1313 1419 -5444 * 1399 237 0 0 chr4 106322162 106322508 -96005839 + L1PB1 LINE L1 4955 5300 -846 478 87 0 0 chr4 106322506 106322575 -96005772 - L1P LINE L1 -742 5409 5341 * 3562 79 4 0 chr4 106322645 106323128 -96005219 + L1PB1 LINE L1 5306 5790 -361 258 148 37 56 chr4 106323129 106323237 -96005110 + (TA)n Simple_repeat Simple_repeat 2 107 0 2556 91 8 11 chr4 106323249 106323623 -96004724 + L1PB1 LINE L1 5779 6151 0 1258 216 71 17 chr4 106323711 106324110 -96004237 - L1MC4a LINE L1 -1191 6617 6266 5208 187 24 16 chr4 106324560 106326417 -96001930 - L1PA16 LINE L1 -3 6163 4289 463 241 0 0 chr4 106326415 106326527 -96001820 - L1M4 LINE L1 -1114 5032 4921 * 972 247 53 4 chr4 106327281 106327508 -96000839 - MER8 DNA MER2_type 0 239 2 1893 249 88 14 chr4 106328031 106328622 -95999725 + L1ME3 LINE L1 5440 6074 -88 876 229 61 8 chr4 106328637 106328881 -95999466 + MER57A LTR ERV1 1 272 -131 418 139 0 14 chr4 106328935 106329007 -95999340 + LTR54 LTR ERV1 435 505 -5 24 32 0 0 chr4 106329630 106329661 -95998686 + AT_rich Low_complexity Low_complexity 1 31 0 738 254 29 0 chr4 106330376 106330549 -95997798 + MER5A DNA MER1_type 1 178 -11 247 229 14 57 chr4 106330978 106331048 -95997299 + MLT1J2 LTR MaLR 97 163 -287 973 220 0 0 chr4 106331125 106331298 -95997049 - MER5A DNA MER1_type 0 189 17 235 311 68 20 chr4 106331313 106331461 -95996886 + MLT1J2 LTR MaLR 258 412 -38 210 333 0 0 chr4 106331806 106331857 -95996490 + L2 LINE L2 3185 3235 -37 360 224 68 102 chr4 106331992 106332139 -95996208 - L2 LINE L2 -4 3309 3168 513 32 0 0 chr4 106332926 106332989 -95995358 + (TGGA)n Simple_repeat Simple_repeat 2 64 0 226 284 8 30 chr4 106333242 106333376 -95994971 + L1ME LINE L1 5704 5834 -287 315 0 0 0 chr4 106333445 106333480 -95994867 + (TG)n Simple_repeat Simple_repeat 1 35 0 207 0 0 0 chr4 106333479 106333502 -95994845 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 191 114 29 0 chr4 106334111 106334146 -95994201 + (TA)n Simple_repeat Simple_repeat 2 37 0 29 0 0 0 chr4 106334173 106334202 -95994145 + AT_rich Low_complexity Low_complexity 1 29 0 663 97 0 4 chr4 106334409 106334627 -95993720 - AluY SINE Alu -10 301 2 1781 144 61 0 chr4 106335825 106336103 -95992244 + AluSx SINE Alu 1 295 -17 21 57 0 0 chr4 106336336 106336371 -95991976 + AT_rich Low_complexity Low_complexity 1 35 0 470 289 66 20 chr4 106337655 106337852 -95990495 - MIR SINE MIR -9 253 48 184 262 0 0 chr4 106338434 106338476 -95989871 - MIR3 SINE MIR -16 192 151 191 256 0 0 chr4 106338686 106338725 -95989622 - MIR SINE MIR -57 151 113 210 321 36 36 chr4 106339275 106339387 -95988960 + MIR3 SINE MIR 5 116 -92 3977 44 0 0 chr4 106339882 106340364 -95987983 - L1PA3 LINE L1 0 6155 5674 24 0 0 0 chr4 106340364 106340388 -95987959 + AT_rich Low_complexity Low_complexity 1 24 0 579 181 163 6 chr4 106342107 106342267 -95986080 + MER53 DNA DNA 2 186 -3 273 264 190 37 chr4 106342296 106342325 -95986022 - MIR SINE MIR -74 188 165 201 39 0 0 chr4 106342325 106342351 -95985996 + (TTA)n Simple_repeat Simple_repeat 3 28 0 273 264 190 37 chr4 106342351 106342469 -95985878 - MIR SINE MIR -97 165 12 1763 181 24 9 chr4 106342469 106342806 -95985541 + MER2 DNA MER2_type 2 343 -1 273 264 190 37 chr4 106342806 106342820 -95985527 - MIR SINE MIR -250 12 1 228 143 0 0 chr4 106342975 106343017 -95985330 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 255 326 32 0 chr4 106344231 106344326 -95984021 + MER117 DNA MER1_type 50 147 -50 1164 182 10 13 chr4 106344562 106344852 -95983495 + MLT1A1 LTR MaLR 1 365 0 384 336 154 0 chr4 106345694 106345837 -95982510 + MER91A DNA MER1_type 30 194 -2 3130 95 2 13 chr4 106346768 106346859 -95981488 + L1PB1 LINE L1 5701 5791 -360 315 49 0 0 chr4 106346859 106346900 -95981447 + (TG)n Simple_repeat Simple_repeat 2 42 0 3130 95 2 13 chr4 106346900 106347259 -95981088 + L1PB1 LINE L1 5791 6146 -5 315 311 205 41 chr4 106348066 106348576 -95979771 - L2 LINE L2 -56 3257 2642 216 225 67 34 chr4 106348588 106348677 -95979670 - L2 LINE L2 -831 2483 2392 353 300 171 31 chr4 106349051 106349338 -95979009 - HAL1b LINE L1 -989 359 33 2204 126 0 0 chr4 106349426 106349735 -95978612 - AluSq SINE Alu 0 313 5 1405 163 0 0 chr4 106349891 106350100 -95978247 - AluJb SINE Alu -101 211 3 378 318 131 21 chr4 106350101 106350384 -95977963 + L2 LINE L2 2192 2505 -809 1995 153 30 0 chr4 106350812 106351145 -95977202 + MER7A DNA MER2_type 5 345 -1 23 0 0 0 chr4 106351257 106351280 -95977067 + AT_rich Low_complexity Low_complexity 1 23 0 187 239 0 0 chr4 106351411 106351457 -95976890 + L2 LINE L2 3263 3308 -5 2352 66 27 3 chr4 106351493 106351794 -95976553 + AluY SINE Alu 2 309 -2 2411 86 3 13 chr4 106352382 106352697 -95975650 + AluSp SINE Alu 2 313 0 2406 87 0 0 chr4 106354468 106354779 -95973568 + AluY SINE Alu 1 311 0 35 24 0 0 chr4 106355032 106355074 -95973273 + AT_rich Low_complexity Low_complexity 1 42 0 1114 277 70 30 chr4 106355872 106356335 -95972012 + L1ME3A LINE L1 2659 3171 -2975 2313 107 0 7 chr4 106356335 106356644 -95971703 + AluSx SINE Alu 3 309 -3 1114 277 70 30 chr4 106356644 106357014 -95971333 + L1ME3A LINE L1 3171 3525 -2621 826 238 30 78 chr4 106357029 106357428 -95970919 + L1ME3A LINE L1 5254 5633 -529 1032 281 49 17 chr4 106357589 106357998 -95970349 + L1ME3A LINE L1 5696 6117 -53 26 0 0 0 chr4 106358803 106358829 -95969518 + AT_rich Low_complexity Low_complexity 1 26 0 252 182 0 0 chr4 106358869 106358913 -95969434 - MSTC LTR MaLR -11 385 342 2282 97 3 0 chr4 106358916 106359224 -95969123 - AluY SINE Alu -2 309 1 813 195 106 30 chr4 106359225 106359549 -95968798 - MSTC LTR MaLR -38 388 1 2038 139 0 7 chr4 106359797 106360098 -95968249 + AluJb SINE Alu 1 299 -13 498 309 73 0 chr4 106361791 106361956 -95966391 + MER5B DNA MER1_type 2 178 0 1827 142 3 80 chr4 106363441 106363779 -95964568 - AluJb SINE Alu 0 312 1 289 216 14 0 chr4 106363845 106363919 -95964428 - MER116 DNA Mariner -5 75 1 253 287 178 20 chr4 106364033 106364134 -95964213 - MIR SINE MIR -114 148 32 229 369 0 0 chr4 106367198 106367282 -95961065 + L1MC4a LINE L1 5582 5665 -2143 597 271 41 8 chr4 106367294 106367538 -95960809 + L1MC4a LINE L1 5704 5955 -1853 270 289 72 47 chr4 106367912 106368147 -95960200 + L1MC4a LINE L1 6414 6654 -1154 277 239 0 15 chr4 106368174 106368241 -95960106 - MER63 DNA MER1_type -1 1060 995 240 214 12 133 chr4 106368339 106368512 -95959835 + L1MC5 LINE L1 6892 7043 -918 1729 196 87 116 chr4 106368529 106368736 -95959611 + LTR1B LTR ERV1 1 212 -614 1945 124 4 4 chr4 106368736 106369011 -95959336 + AluSq SINE Alu 9 283 -30 1729 196 87 116 chr4 106369011 106369570 -95958777 + LTR1B LTR ERV1 212 745 -81 477 256 8 8 chr4 106369649 106369770 -95958577 + LTR28 LTR ERV1 900 1020 0 277 233 58 0 chr4 106369775 106369861 -95958486 + L1MC5 LINE L1 7114 7204 -757 2112 233 94 40 chr4 106370021 106370704 -95957643 - MER21B LTR ERV1 -124 739 20 401 228 0 0 chr4 106370724 106370803 -95957544 - MER21B LTR ERV1 -773 90 12 318 252 46 26 chr4 106370818 106370969 -95957378 + L1MC5 LINE L1 7339 7492 -469 596 213 49 68 chr4 106371069 106371332 -95957015 + L1MC5 LINE L1 7520 7777 -184 291 227 0 15 chr4 106371394 106371460 -95956887 + MER5A DNA MER1_type 28 92 -97 403 264 14 0 chr4 106372731 106372871 -95955476 - L1MA10 LINE L1 -11 6323 6182 1947 239 43 13 chr4 106372948 106373554 -95954793 - L1ME1 LINE L1 -247 5919 5296 1644 212 28 0 chr4 106373549 106373940 -95954407 - L1MA8 LINE L1 -1955 4191 3790 * 1947 148 146 0 chr4 106373940 106374405 -95953942 + L1MA8 LINE L1 4201 4733 -1413 691 172 14 0 chr4 106374394 106374539 -95953808 + L1MA8 LINE L1 5062 5208 -938 * 2463 105 128 5 chr4 106374539 106374938 -95953409 - LTR7 LTR ERV1 -2 448 1 2293 93 48 13 chr4 106374938 106375315 -95953032 - HERVH LTR ERV1 0 7713 7324 1313 108 25 0 chr4 106375315 106375518 -95952829 - HERVH LTR ERV1 -1894 5819 5612 1132 159 0 0 chr4 106375532 106375721 -95952626 - HERVH LTR ERV1 -2564 5149 4961 * 3965 119 6 4 chr4 106375720 106376358 -95951989 - HERVH LTR ERV1 -3092 4621 3994 3169 154 26 7 chr4 106376368 106376954 -95951393 - HERVH LTR ERV1 -3977 3736 3140 * 16225 127 32 30 chr4 106376933 106379923 -95948424 - HERVH LTR ERV1 -4718 2995 1 1975 99 6 7 chr4 106379931 106380322 -95948025 - LTR7 LTR ERV1 -8 442 1 2634 172 10 1 chr4 106380323 106380907 -95947440 + L1MA8 LINE L1 5203 5793 -498 189 125 54 0 chr4 106380912 106380968 -95947379 + (TA)n Simple_repeat Simple_repeat 1 59 0 226 165 41 52 chr4 106380972 106381069 -95947278 + (TTATA)n Simple_repeat Simple_repeat 5 100 0 204 138 88 6 chr4 106381088 106381247 -95947100 + (TA)n Simple_repeat Simple_repeat 2 173 0 2044 161 74 7 chr4 106381293 106381739 -95946608 + L1MA8 LINE L1 5816 6291 0 183 42 0 0 chr4 106381808 106381832 -95946515 + (TTA)n Simple_repeat Simple_repeat 1 24 0 473 228 59 0 chr4 106381832 106381933 -95946414 - FRAM SINE Alu -30 146 40 6953 176 37 11 chr4 106381953 106383940 -95944407 - L1MA5 LINE L1 -2 6298 4232 1962 115 4 0 chr4 106383940 106384200 -95944147 - AluSq SINE Alu -15 298 38 6953 176 37 11 chr4 106384200 106384670 -95943677 - L1MA5 LINE L1 -2068 4232 3776 1300 248 62 42 chr4 106384665 106384809 -95943538 - L1MEc LINE L1 -3873 2523 2383 * 1153 195 183 12 chr4 106384809 106385066 -95943281 - AluJo SINE Alu -1 301 1 1300 248 62 42 chr4 106385066 106385636 -95942711 - L1MEc LINE L1 -4013 2383 1795 1504 300 21 27 chr4 106385637 106386150 -95942197 + LTR40a LTR ERVL 3 512 -7 1246 270 75 19 chr4 106386153 106386932 -95941415 - L1MEc LINE L1 -4593 1803 982 339 250 21 52 chr4 106386968 106387064 -95941283 - MER96 DNA MER1_type? -3 172 80 1148 251 12 45 chr4 106387081 106387427 -95940920 - L1MEc LINE L1 -5457 939 583 1916 162 125 8 chr4 106387427 106387810 -95940537 + MSTA LTR MaLR 1 428 0 9264 138 9 42 chr4 106387812 106389444 -95938903 + MSTA-int LTR MaLR 3 1580 0 1383 152 128 114 chr4 106389444 106389866 -95938481 + MSTA LTR MaLR 1 428 0 1148 251 12 45 chr4 106389866 106389917 -95938430 - L1MEc LINE L1 -5812 584 551 572 289 34 60 chr4 106389900 106390040 -95938307 - L1MEc LINE L1 -6129 267 133 * 2195 114 0 0 chr4 106390040 106390320 -95938027 + AluSg SINE Alu 1 280 -30 280 0 0 0 chr4 106390320 106390351 -95937996 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 572 289 34 60 chr4 106390351 106390444 -95937903 - L1MEc LINE L1 -6263 133 39 21 0 0 0 chr4 106390610 106390631 -95937716 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 106390963 106390993 -95937354 + AT_rich Low_complexity Low_complexity 1 30 0 316 241 9 62 chr4 106391070 106391182 -95937165 - L1MC4 LINE L1 -1 8041 7936 2147 111 7 3 chr4 106391235 106391533 -95936814 - AluSc SINE Alu -4 305 7 1459 164 77 17 chr4 106391533 106391820 -95936527 - AluJo SINE Alu -8 304 1 226 145 224 40 chr4 106392636 106392712 -95935635 + LTR16C LTR ERVL 140 229 -262 243 283 131 10 chr4 106392788 106392887 -95935460 + LTR16C LTR ERVL 381 491 0 224 344 16 0 chr4 106392965 106393026 -95935321 + L2 LINE L2 3164 3225 -47 189 107 0 0 chr4 106393051 106393079 -95935268 + (A)n Simple_repeat Simple_repeat 1 28 0 303 360 39 13 chr4 106393423 106393576 -95934771 + L2 LINE L2 3116 3272 0 193 265 8 26 chr4 106393657 106393774 -95934573 + GA-rich Low_complexity Low_complexity 2 116 0 230 114 0 0 chr4 106395232 106395267 -95933080 - L2 LINE L2 0 3313 3279 2223 77 7 7 chr4 106396232 106396519 -95931828 + AluY SINE Alu 24 310 -1 22 80 0 0 chr4 106397594 106397644 -95930703 + AT_rich Low_complexity Low_complexity 1 50 0 770 263 30 15 chr4 106397655 106397921 -95930426 - L1ME1 LINE L1 -18 6148 5879 1092 234 127 52 chr4 106397921 106398118 -95930229 + LTR40a LTR ERVL 1 182 -337 1960 162 0 10 chr4 106398118 106398432 -95929915 - AluSx SINE Alu -1 311 1 1092 234 127 52 chr4 106398432 106398452 -95929895 + LTR40a LTR ERVL 182 199 -320 2574 50 0 0 chr4 106398452 106398753 -95929594 - AluY SINE Alu -10 301 1 1092 234 127 52 chr4 106398753 106399013 -95929334 + LTR40a LTR ERVL 199 515 -4 2774 222 68 43 chr4 106399017 106399074 -95929273 - L1ME1 LINE L1 -284 5882 5828 1913 208 44 18 chr4 106399074 106399527 -95928820 - MLT1C LTR MaLR 0 467 3 2774 222 68 43 chr4 106399527 106399829 -95928518 - L1ME1 LINE L1 -338 5828 5535 2557 57 0 0 chr4 106399829 106400128 -95928219 - AluY SINE Alu -12 299 1 2774 222 68 43 chr4 106400128 106401178 -95927169 - L1ME1 LINE L1 -631 5535 4457 384 285 46 60 chr4 106401259 106401390 -95926957 + MER110A LTR ERV1 198 329 -139 2531 58 3 6 chr4 106401390 106401702 -95926645 + AluY SINE Alu 1 311 0 384 285 46 60 chr4 106401702 106401842 -95926505 + MER110A LTR ERV1 329 466 -2 483 244 170 26 chr4 106401857 106402086 -95926261 + MLT1L LTR MaLR 337 598 -17 569 324 23 32 chr4 106402447 106402666 -95925681 - MIR SINE MIR 0 262 46 180 0 0 0 chr4 106403350 106403370 -95924977 + (CAA)n Simple_repeat Simple_repeat 2 21 0 194 279 147 37 chr4 106404042 106404178 -95924169 - L2 LINE L2 -315 2957 2807 237 300 25 12 chr4 106404550 106404630 -95923717 - L3 LINE CR1 -11 1566 1486 210 118 0 0 chr4 106408132 106408166 -95920181 + (T)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chr4 106408667 106408696 -95919651 + (A)n Simple_repeat Simple_repeat 1 29 0 309 214 0 43 chr4 106411280 106411350 -95916997 + L2 LINE L2 3203 3269 -3 285 29 0 0 chr4 106412194 106412228 -95916119 + (A)n Simple_repeat Simple_repeat 1 34 0 387 276 71 0 chr4 106414321 106414448 -95913899 - MER3 DNA MER1_type 0 209 74 34 42 0 0 chr4 106415335 106415383 -95912964 + AT_rich Low_complexity Low_complexity 1 48 0 26 0 0 0 chr4 106415903 106415929 -95912418 + AT_rich Low_complexity Low_complexity 1 26 0 186 250 0 0 chr4 106416063 106416119 -95912228 + (TA)n Simple_repeat Simple_repeat 1 56 0 444 19 0 0 chr4 106416122 106416175 -95912172 + (CA)n Simple_repeat Simple_repeat 2 54 0 631 284 121 15 chr4 106416188 106416452 -95911895 + L2 LINE L2 2281 2572 -742 1198 183 74 25 chr4 106416463 106416748 -95911599 - L1MB8 LINE L1 -5 6173 5875 724 288 39 97 chr4 106416750 106417480 -95910867 + L2 LINE L2 2590 3312 -1 1994 117 7 11 chr4 106417828 106418139 -95910208 + AluSx SINE Alu 1 310 0 282 287 128 0 chr4 106418362 106418456 -95909891 + MIR SINE MIR 86 191 -71 201 335 113 53 chr4 106418559 106418815 -95909532 + L2 LINE L2 1851 2090 -1224 1299 206 22 6 chr4 106418815 106419130 -95909217 + MER33 DNA MER1_type 1 320 -4 201 335 113 53 chr4 106419130 106419244 -95909103 + L2 LINE L2 2090 2196 -1118 2403 90 0 3 chr4 106419244 106419556 -95908791 - AluY SINE Alu 0 311 1 201 335 113 53 chr4 106419556 106419787 -95908560 + L2 LINE L2 2196 2489 -825 474 316 123 50 chr4 106419792 106420273 -95908074 - LTR67 LTR ERVL -2 555 40 30 27 0 0 chr4 106420428 106420465 -95907882 + AT_rich Low_complexity Low_complexity 1 37 0 227 339 95 18 chr4 106420813 106420981 -95907366 + MIR SINE MIR 68 248 -14 2433 82 0 0 chr4 106421209 106421512 -95906835 - AluSg SINE Alu -7 303 1 198 344 0 0 chr4 106421564 106421625 -95906722 + L2 LINE L2 3243 3303 -10 454 317 96 18 chr4 106421929 106422210 -95906137 + L2 LINE L2 2833 3135 -178 28 86 0 0 chr4 106424116 106424186 -95904161 + AT_rich Low_complexity Low_complexity 1 70 0 2214 106 13 10 chr4 106424274 106424577 -95903770 - AluSx SINE Alu -6 306 3 180 0 0 0 chr4 106425019 106425039 -95903308 + (T)n Simple_repeat Simple_repeat 1 20 0 204 40 0 0 chr4 106425643 106425668 -95902679 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr4 106426397 106426418 -95901929 + AT_rich Low_complexity Low_complexity 1 21 0 2234 92 7 7 chr4 106426438 106426732 -95901615 + AluSp SINE Alu 1 294 -19 661 285 32 0 chr4 106428128 106428286 -95900061 - MER63A DNA MER1_type 0 210 48 324 318 24 8 chr4 106428679 106428805 -95899542 + L1MC4 LINE L1 7914 8041 -1 27 62 0 0 chr4 106429335 106429383 -95898964 + AT_rich Low_complexity Low_complexity 1 48 0 604 230 128 25 chr4 106430222 106430457 -95897890 - Charlie2 DNA MER1_type -106 2756 2498 492 189 42 0 chr4 106430486 106430581 -95897766 - FLAM_A SINE Alu -28 114 16 300 176 25 142 chr4 106430611 106430850 -95897497 - Charlie2 DNA MER1_type -421 2441 2231 840 244 95 45 chr4 106430868 106431204 -95897143 - Charlie2 DNA MER1_type -2429 353 1 261 0 0 0 chr4 106431355 106431384 -95896963 + (A)n Simple_repeat Simple_repeat 1 29 0 30 0 0 0 chr4 106432977 106433007 -95895340 + AT_rich Low_complexity Low_complexity 1 30 0 503 305 21 0 chr4 106433227 106433368 -95894979 + MIR SINE MIR 2 145 -117 375 263 125 13 chr4 106433365 106433517 -95894830 - MIR SINE MIR -38 224 56 * 254 305 0 0 chr4 106435869 106435928 -95892419 + L2 LINE L2 3147 3205 -67 23 54 0 0 chr4 106436969 106437006 -95891341 + AT_rich Low_complexity Low_complexity 1 37 0 292 230 40 14 chr4 106438690 106438838 -95889509 + (TTATA)n Simple_repeat Simple_repeat 4 155 0 535 235 98 22 chr4 106438927 106439110 -95889237 + MIR SINE MIR 18 214 -48 1940 146 7 7 chr4 106439909 106440204 -95888143 - AluSx SINE Alu -16 296 2 256 220 0 0 chr4 106441681 106441731 -95886616 + L2 LINE L2 3264 3313 0 1195 129 62 14 chr4 106442729 106442938 -95885409 + MER2 DNA MER2_type 127 345 0 1323 201 90 0 chr4 106442944 106443212 -95885135 - AluJo SINE Alu -20 292 1 1134 124 18 32 chr4 106446679 106446896 -95881451 - L1MA5A LINE L1 0 6297 6084 785 323 15 15 chr4 106447282 106447545 -95880802 - L3 LINE CR1 -356 1221 959 377 305 51 46 chr4 106448148 106448330 -95880017 - MIR SINE MIR -61 147 3 387 294 135 6 chr4 106448610 106448773 -95879574 - MIR SINE MIR -13 249 66 354 280 120 20 chr4 106448913 106449063 -95879284 + MIR3 SINE MIR 23 187 -21 1227 39 7 0 chr4 106450303 106450488 -95877859 + L1PA4 LINE L1 5983 6168 0 22 0 0 0 chr4 106451397 106451419 -95876928 + AT_rich Low_complexity Low_complexity 1 22 0 186 318 32 16 chr4 106451608 106451671 -95876676 + L2 LINE L2 3191 3254 -18 1101 148 0 18 chr4 106451677 106451846 -95876501 - FRAM SINE Alu -11 165 1 2456 150 7 40 chr4 106452251 106452697 -95875650 + Tigger2a DNA MER2_type 3 433 -1 265 354 10 10 chr4 106453108 106453204 -95875143 + MIR SINE MIR 56 151 -111 296 349 103 35 chr4 106454160 106454392 -95873955 + L3 LINE CR1 1329 1576 -1 625 254 51 35 chr4 106455021 106455277 -95873070 + MIR SINE MIR 3 262 0 1365 73 0 0 chr4 106455389 106455554 -95872793 + AluY SINE Alu 89 253 -58 234 0 0 0 chr4 106455764 106455790 -95872557 + (TG)n Simple_repeat Simple_repeat 2 27 0 2012 104 0 0 chr4 106455815 106456083 -95872264 - AluSg SINE Alu -15 295 28 2373 126 22 0 chr4 106457389 106457745 -95870602 - THE1B LTR MaLR 0 364 1 470 349 27 7 chr4 106458390 106458539 -95869808 + L2 LINE L2 3121 3272 0 200 270 0 0 chr4 106459497 106459534 -95868813 - MIR SINE MIR -131 77 41 1955 60 0 12 chr4 106461909 106462159 -95866188 - AluY SINE Alu -7 304 58 364 307 47 56 chr4 106462397 106462649 -95865698 + MIR SINE MIR 3 250 -12 280 321 9 37 chr4 106462812 106462921 -95865426 + MER5B DNA MER1_type 1 106 -72 2219 93 0 7 chr4 106466894 106467196 -95861151 + AluSq SINE Alu 1 300 -13 200 35 35 0 chr4 106467570 106467599 -95860748 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 207 0 0 0 chr4 106468371 106468394 -95859953 + (CA)n Simple_repeat Simple_repeat 2 24 0 252 59 0 0 chr4 106468394 106468428 -95859919 + (GA)n Simple_repeat Simple_repeat 1 34 0 33 25 0 0 chr4 106468623 106468663 -95859684 + AT_rich Low_complexity Low_complexity 1 40 0 1808 229 98 4 chr4 106469862 106470394 -95857953 - L1ME3A LINE L1 -5 6165 5584 194 400 0 8 chr4 106470479 106470599 -95857748 + L2 LINE L2 2935 3053 -219 246 303 79 73 chr4 106470736 106470839 -95857508 + L2 LINE L2 3107 3213 -59 2438 87 0 0 chr4 106470839 106471150 -95857197 + AluY SINE Alu 1 311 0 246 303 79 73 chr4 106471150 106471211 -95857136 + L2 LINE L2 3213 3272 0 262 343 39 10 chr4 106472036 106472138 -95856209 - MIR3 SINE MIR -14 194 90 2296 88 3 13 chr4 106472892 106473199 -95855148 + AluSx SINE Alu 1 304 -8 282 225 63 0 chr4 106473305 106473416 -95854931 + (TA)n Simple_repeat Simple_repeat 2 119 0 22 0 0 0 chr4 106473866 106473888 -95854459 + AT_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chr4 106474237 106474280 -95854067 + (TAA)n Simple_repeat Simple_repeat 1 43 0 253 67 22 22 chr4 106474280 106474325 -95854022 + (GGA)n Simple_repeat Simple_repeat 2 46 0 24 0 0 0 chr4 106474584 106474608 -95853739 + AT_rich Low_complexity Low_complexity 1 24 0 4405 73 0 40 chr4 106474847 106475475 -95852872 - L1PA7 LINE L1 0 6154 5552 1957 117 7 27 chr4 106475593 106475893 -95852454 + Tigger1 DNA MER2_type 2125 2418 0 189 175 0 0 chr4 106475917 106475957 -95852390 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 226 274 0 36 chr4 106476356 106476440 -95851907 + CT-rich Low_complexity Low_complexity 6 86 0 2177 107 0 0 chr4 106477973 106478264 -95850083 - AluSg SINE Alu -19 291 1 33 0 0 0 chr4 106482042 106482075 -95846272 + AT_rich Low_complexity Low_complexity 1 33 0 572 255 103 0 chr4 106483957 106484161 -95844186 - L1ME3 LINE L1 0 6162 5938 391 174 0 31 chr4 106484530 106484628 -95843719 + GA-rich Low_complexity Low_complexity 3 97 0 255 146 0 21 chr4 106484630 106484678 -95843669 + (GA)n Simple_repeat Simple_repeat 2 48 0 2304 108 3 0 chr4 106487470 106487777 -95840570 - AluSc SINE Alu 0 309 2 210 254 0 0 chr4 106487884 106487943 -95840404 + A-rich Low_complexity Low_complexity 1 59 0 181 283 75 19 chr4 106488194 106488247 -95840100 + L2 LINE L2 3182 3237 -76 21 0 0 0 chr4 106488310 106488331 -95840016 + AT_rich Low_complexity Low_complexity 1 21 0 1260 184 9 0 chr4 106488378 106488601 -95839746 + AluJo SINE Alu 24 248 -64 419 176 0 0 chr4 106488607 106488675 -95839672 + AluJ/FRAM SINE Alu 216 283 -29 632 13 0 13 chr4 106488679 106488757 -95839590 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 810 284 80 44 chr4 106488949 106489312 -95839035 + MLT1J LTR MaLR 135 510 -1 2160 102 3 13 chr4 106490799 106491103 -95837244 + AluSx SINE Alu 2 302 -10 327 394 35 6 chr4 106491446 106491616 -95836731 - MIR3 SINE MIR -1 207 33 216 97 0 0 chr4 106491623 106491654 -95836693 + (A)n Simple_repeat Simple_repeat 1 31 0 429 163 49 78 chr4 106491903 106492046 -95836301 - HsTC2 DNA Tc2 -3 1895 29 300 310 96 46 chr4 106492131 106492370 -95835977 - MIR SINE MIR -6 256 6 213 240 0 0 chr4 106492380 106492430 -95835917 + (TA)n Simple_repeat Simple_repeat 2 51 0 23 68 0 0 chr4 106492955 106492999 -95835348 + AT_rich Low_complexity Low_complexity 1 44 0 922 283 4 8 chr4 106493695 106493932 -95834415 + MIR SINE MIR 18 253 -9 491 314 114 20 chr4 106494716 106495022 -95833325 + L2 LINE L2 2968 3302 -11 294 265 0 78 chr4 106495265 106495367 -95832980 - MER5A DNA MER1_type -2 187 94 1755 51 9 0 chr4 106495566 106495782 -95832565 + AluY SINE Alu 83 300 -11 2239 80 7 0 chr4 106496066 106496354 -95831993 - AluSx SINE Alu -17 295 6 262 253 22 33 chr4 106496369 106496460 -95831887 + CT-rich Low_complexity Low_complexity 1 90 0 600 135 0 0 chr4 106496780 106496869 -95831478 + AluJ/FLAM SINE Alu 4 92 -220 26 30 0 0 chr4 106499025 106499058 -95829289 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr4 106500498 106500520 -95827827 + AT_rich Low_complexity Low_complexity 1 22 0 23 78 0 0 chr4 106501176 106501227 -95827120 + AT_rich Low_complexity Low_complexity 1 51 0 28 48 0 0 chr4 106501470 106501512 -95826835 + AT_rich Low_complexity Low_complexity 1 42 0 549 305 25 35 chr4 106501758 106501955 -95826392 + MIR SINE MIR 2 196 -66 180 0 0 0 chr4 106502032 106502052 -95826295 + (TTC)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr4 106502491 106502514 -95825833 + (T)n Simple_repeat Simple_repeat 1 23 0 261 0 0 0 chr4 106503037 106503066 -95825281 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 26 50 0 0 chr4 106504071 106504111 -95824236 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 106506533 106506554 -95821793 + AT_rich Low_complexity Low_complexity 1 21 0 600 219 16 16 chr4 106506694 106506817 -95821530 + L2 LINE L2 3190 3312 -1 249 366 0 36 chr4 106506884 106506996 -95821351 - L2 LINE L2 -226 3046 2939 842 165 0 0 chr4 106507083 106507216 -95821131 + AluJb SINE Alu 1 133 -179 189 326 105 0 chr4 106507343 106507438 -95820909 + MIR SINE MIR 94 198 -64 1865 116 60 18 chr4 106507873 106508335 -95820012 + AluSx SINE Alu 1 474 0 322 262 116 52 chr4 106508904 106509076 -95819271 - MLT1K LTR MaLR -263 325 143 1596 199 86 29 chr4 106510793 106511235 -95817112 + MLT1C LTR MaLR 1 467 0 195 42 0 0 chr4 106511281 106511305 -95817042 + (CAA)n Simple_repeat Simple_repeat 3 26 0 711 251 92 10 chr4 106511307 106511514 -95816833 - MIR SINE MIR -18 244 21 1420 102 35 35 chr4 106511703 106511957 -95816390 + L1MA5A LINE L1 6038 6291 -6 22 0 0 0 chr4 106511957 106511979 -95816368 + AT_rich Low_complexity Low_complexity 1 22 0 30725 115 15 58 chr4 106511989 106514477 -95813870 + L1PA7 LINE L1 12 2607 -3547 1802 143 3 34 chr4 106514477 106514813 -95813534 + AluSq SINE Alu 1 327 0 30725 115 15 58 chr4 106514813 106518764 -95809583 + L1PA7 LINE L1 2607 6154 0 624 309 70 72 chr4 106518915 106519317 -95809030 + L3 LINE CR1 1077 1477 -100 316 297 124 28 chr4 106519403 106519548 -95808799 + MIR SINE MIR 30 188 -74 359 236 118 0 chr4 106519674 106519801 -95808546 - HsTC2 DNA Tc2 -215 1683 1542 2018 111 0 0 chr4 106519814 106520084 -95808263 + AluSx SINE Alu 24 293 -19 1238 239 132 30 chr4 106520153 106520617 -95807730 - HsTC2 DNA Tc2 -1385 513 3 360 342 110 13 chr4 106521760 106521988 -95806359 + MIR SINE MIR 13 262 0 1250 175 18 9 chr4 106521989 106522217 -95806130 - MER46A DNA MER2_type 0 236 7 403 234 78 58 chr4 106522086 106522240 -95806107 + MER46A DNA MER2_type 10 166 -70 * 2292 79 3 16 chr4 106522595 106522898 -95805449 + AluY SINE Alu 1 299 -12 222 62 0 0 chr4 106523216 106523248 -95805099 + (T)n Simple_repeat Simple_repeat 1 32 0 642 314 135 12 chr4 106524602 106524646 -95803701 + L2 LINE L2 2722 2759 -554 1933 129 0 0 chr4 106524646 106524918 -95803429 + AluSx SINE Alu 29 300 -12 642 314 135 12 chr4 106524918 106525401 -95802946 + L2 LINE L2 2759 3313 0 238 318 0 0 chr4 106525995 106526083 -95802264 - MIR SINE MIR -1 261 174 729 184 0 8 chr4 106526106 106526231 -95802116 - FLAM_A SINE Alu -9 124 1 245 345 101 37 chr4 106526711 106527148 -95801199 + L2 LINE L2 1483 1947 -1367 550 323 96 74 chr4 106527236 106528231 -95800116 + L2 LINE L2 2178 3217 -55 297 314 68 24 chr4 106528414 106528662 -95799685 + MER112 DNA MER1_type 1 259 -1 3633 109 24 4 chr4 106528691 106529232 -95799115 + L1MA3 LINE L1 5517 6068 -237 224 283 200 72 chr4 106529786 106529966 -95798381 - MIR SINE MIR -6 256 54 2360 89 0 0 chr4 106529977 106530270 -95798077 - AluSg SINE Alu -17 293 1 896 266 48 4 chr4 106530270 106530329 -95798018 - MIR SINE MIR -3 259 204 905 141 283 0 chr4 106530329 106530513 -95797834 - MER46A DNA MER2_type 0 236 1 896 266 48 4 chr4 106530513 106530701 -95797646 - MIR SINE MIR -58 204 1 192 97 0 0 chr4 106531239 106531270 -95797077 + (CA)n Simple_repeat Simple_repeat 2 32 0 24 67 0 0 chr4 106531792 106531837 -95796510 + AT_rich Low_complexity Low_complexity 1 45 0 637 311 25 20 chr4 106533353 106533597 -95794750 - MIR SINE MIR -15 247 3 24 0 0 0 chr4 106534535 106534559 -95793788 + AT_rich Low_complexity Low_complexity 1 24 0 2214 102 10 0 chr4 106534812 106535106 -95793241 + AluSg1 SINE Alu 1 297 -12 2395 97 0 0 chr4 106535177 106535486 -95792861 - AluY SINE Alu -2 309 1 257 363 12 0 chr4 106536446 106536526 -95791821 - L2 LINE L2 -218 3054 2974 2437 81 0 3 chr4 106538339 106538646 -95789701 - AluSc SINE Alu -3 306 1 261 310 60 10 chr4 106538730 106538830 -95789517 + L2 LINE L2 3168 3272 0 21 71 0 0 chr4 106539286 106539328 -95789019 + AT_rich Low_complexity Low_complexity 1 42 0 432 250 265 20 chr4 106539440 106539640 -95788707 - MIR SINE MIR -6 256 8 2230 96 36 0 chr4 106539928 106540230 -95788117 + AluSp SINE Alu 1 313 0 207 0 0 0 chr4 106541395 106541418 -95786929 + (A)n Simple_repeat Simple_repeat 1 23 0 214 265 143 31 chr4 106542459 106542557 -95785790 - MIR SINE MIR -117 145 37 * 583 213 23 52 chr4 106542551 106542725 -95785622 - MIR SINE MIR -66 196 28 229 382 20 0 chr4 106543854 106543956 -95784391 + MIR3 SINE MIR 89 192 -16 1804 169 17 39 chr4 106544491 106544846 -95783501 + MER7A DNA MER2_type 1 345 -1 2118 106 3 0 chr4 106545486 106545779 -95782568 + AluSx SINE Alu 1 294 -18 2154 101 0 0 chr4 106545779 106546056 -95782291 + AluSg1 SINE Alu 1 277 -32 288 0 0 0 chr4 106546057 106546089 -95782258 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 306 258 9 94 chr4 106546411 106546555 -95781792 + LTR33A LTR ERVL 60 162 -361 627 180 0 16 chr4 106547487 106547609 -95780738 - FRAM SINE Alu -2 174 55 722 282 52 55 chr4 106547611 106547958 -95780389 + L2 LINE L2 2960 3305 -8 185 354 38 13 chr4 106548522 106548601 -95779746 - L3 LINE CR1 -26 1551 1471 1715 292 103 31 chr4 106550949 106552233 -95776114 - L2 LINE L2 -13 3300 1921 237 223 143 36 chr4 106554329 106554441 -95773906 - L2 LINE L2 0 3313 3190 370 341 83 7 chr4 106554700 106554861 -95773486 + MER5B DNA MER1_type 6 188 -1 568 231 143 37 chr4 106554976 106555192 -95773155 - MIR SINE MIR -2 260 22 307 344 91 16 chr4 106555292 106555478 -95772869 + L2 LINE L2 3112 3311 -2 226 314 105 9 chr4 106555762 106555867 -95772480 + MIR SINE MIR 37 151 -57 187 318 0 16 chr4 106555888 106555951 -95772396 + L2 LINE L2 3234 3295 -18 1627 188 0 14 chr4 106557289 106557600 -95770747 + AluJo SINE Alu 5 312 0 478 199 298 0 chr4 106558320 106558481 -95769866 - MIR SINE MIR -23 239 31 333 234 0 25 chr4 106558908 106558997 -95769350 - MIR SINE MIR -65 143 56 234 311 143 6 chr4 106559943 106560104 -95768243 + MIR3 SINE MIR 17 199 -9 219 260 68 27 chr4 106560838 106560911 -95767436 - MIR3 SINE MIR -11 197 122 22 88 0 0 chr4 106561192 106561249 -95767098 + AT_rich Low_complexity Low_complexity 1 57 0 224 312 96 45 chr4 106561510 106561667 -95766680 - MIR SINE MIR -2 260 96 24 53 0 0 chr4 106563228 106563266 -95765081 + AT_rich Low_complexity Low_complexity 1 38 0 494 280 0 0 chr4 106563670 106563802 -95764545 - MER94 DNA DNA 0 134 3 1511 154 26 82 chr4 106564269 106564600 -95763747 + AluJo SINE Alu 1 314 0 26 50 0 0 chr4 106564611 106564651 -95763696 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 106564731 106564752 -95763595 + AT_rich Low_complexity Low_complexity 1 21 0 271 341 57 81 chr4 106565701 106565947 -95762400 - L2 LINE L2 -15 3257 3018 2129 130 48 22 chr4 106566218 106566573 -95761774 + THE1B LTR MaLR 1 364 0 860 324 84 13 chr4 106566603 106566983 -95761364 - MLT1J LTR MaLR -35 476 70 1300 188 40 3 chr4 106567908 106568211 -95760136 + MER33 DNA MER1_type 6 319 -5 282 294 127 24 chr4 106568212 106568338 -95760009 + MIR SINE MIR 124 262 0 194 146 24 24 chr4 106569259 106569300 -95759047 + MIR SINE MIR 19 59 -203 369 313 117 10 chr4 106569312 106569497 -95758850 + MIR SINE MIR 20 231 -31 202 356 20 0 chr4 106570520 106570621 -95757726 - MIR SINE MIR -112 150 48 21 0 0 0 chr4 106571034 106571055 -95757292 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 106572417 106572438 -95755909 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 106572489 106572519 -95755828 + AT_rich Low_complexity Low_complexity 1 30 0 634 296 32 0 chr4 106573019 106573205 -95755142 + MIR SINE MIR 37 228 -34 29 0 0 0 chr4 106574329 106574358 -95753989 + AT_rich Low_complexity Low_complexity 1 29 0 254 336 44 22 chr4 106574504 106574607 -95753740 + MIR SINE MIR 1 109 -153 932 201 27 0 chr4 106574607 106574791 -95753556 + MER5A DNA MER1_type 1 189 0 254 336 44 22 chr4 106574791 106574824 -95753523 + MIR SINE MIR 109 140 -122 2149 137 0 0 chr4 106578084 106578383 -95749964 - AluSx SINE Alu -13 299 1 23 0 0 0 chr4 106578484 106578507 -95749840 + AT_rich Low_complexity Low_complexity 1 23 0 2090 109 20 0 chr4 106578507 106578800 -95749547 + AluSq SINE Alu 1 299 -14 962 147 26 37 chr4 106578865 106579056 -95749291 - MER5A DNA MER1_type 0 189 1 479 253 79 28 chr4 106580957 106581135 -95747212 + MIR SINE MIR 12 198 -64 208 292 0 0 chr4 106581140 106581188 -95747159 - MIR SINE MIR 0 262 215 326 282 46 56 chr4 106581250 106581422 -95746925 - MIR SINE MIR -39 169 3 210 318 0 0 chr4 106583928 106583991 -95744356 - MER5B DNA MER1_type 0 178 116 332 323 23 15 chr4 106584276 106584406 -95743941 - MIR3 SINE MIR -48 160 30 1014 220 40 20 chr4 106584431 106584735 -95743612 + MER33 DNA MER1_type 12 321 -3 542 256 73 30 chr4 106584849 106585013 -95743334 - MER5B DNA MER1_type -7 171 1 28 29 0 0 chr4 106585698 106585733 -95742614 + AT_rich Low_complexity Low_complexity 1 35 0 2103 100 0 4 chr4 106586731 106587034 -95741313 + AluSc SINE Alu 1 302 0 202 224 0 0 chr4 106587132 106587181 -95741166 + (TA)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr4 106587477 106587499 -95740848 + AT_rich Low_complexity Low_complexity 1 22 0 1638 136 0 114 chr4 106587499 106587823 -95740524 - AluJo SINE Alu -15 287 1 2437 75 0 0 chr4 106587871 106588176 -95740171 + AluY SINE Alu 1 305 -6 27 87 0 0 chr4 106588311 106588380 -95739967 + AT_rich Low_complexity Low_complexity 1 69 0 34 0 0 0 chr4 106588828 106588862 -95739485 + AT_rich Low_complexity Low_complexity 1 34 0 2096 110 13 0 chr4 106591063 106591363 -95736984 + AluSx SINE Alu 1 304 -8 24 0 0 0 chr4 106593377 106593401 -95734946 + AT_rich Low_complexity Low_complexity 1 24 0 354 317 196 27 chr4 106593854 106594078 -95734269 + MIR SINE MIR 1 262 0 217 305 34 0 chr4 106594389 106594448 -95733899 - MIR3 SINE MIR -38 170 110 200 333 0 0 chr4 106594489 106594549 -95733798 + MIR SINE MIR 184 243 -19 540 297 55 6 chr4 106594556 106594738 -95733609 - MIR SINE MIR -66 196 6 208 294 18 64 chr4 106594753 106594862 -95733485 - MIR3 SINE MIR -102 106 3 404 294 68 12 chr4 106595422 106595585 -95732762 + MIR SINE MIR 73 244 -18 2236 109 14 14 chr4 106595809 106596158 -95732189 + L1PA11 LINE L1 5824 6172 -2 458 319 49 35 chr4 106597121 106597347 -95731000 - MIR SINE MIR -31 231 3 632 251 150 24 chr4 106597709 106597857 -95730490 + MIR SINE MIR 29 212 -50 180 0 0 0 chr4 106597857 106597877 -95730470 + (TAA)n Simple_repeat Simple_repeat 1 20 0 632 251 150 24 chr4 106597877 106597935 -95730412 + MIR SINE MIR 212 261 -1 34 24 0 0 chr4 106598656 106598697 -95729650 + AT_rich Low_complexity Low_complexity 1 41 0 1405 207 62 0 chr4 106600048 106600216 -95728131 - AluJb SINE Alu -4 308 113 218 32 32 0 chr4 106600216 106600247 -95728100 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1405 207 62 0 chr4 106600247 106600368 -95727979 - AluJb SINE Alu -199 113 1 473 310 86 11 chr4 106600737 106600904 -95727443 - MIR SINE MIR -67 141 9 305 320 0 3 chr4 106601053 106601156 -95727191 + MIR SINE MIR 58 157 -63 210 203 62 47 chr4 106601325 106601389 -95726958 + MER91A DNA MER1_type 16 80 -116 245 265 15 29 chr4 106602514 106602582 -95725765 - L2 LINE L2 -1 3271 3205 195 42 0 0 chr4 106605085 106605109 -95723238 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 211 353 39 20 chr4 106606929 106607031 -95721316 - MIR SINE MIR -84 124 21 624 197 15 15 chr4 106607623 106607755 -95720592 + MER94 DNA DNA 3 134 0 1037 275 121 42 chr4 106608326 106608877 -95719470 + L2 LINE L2 2721 3313 0 354 45 0 0 chr4 106610626 106610670 -95717677 + (CATA)n Simple_repeat Simple_repeat 3 46 0 2742 107 20 29 chr4 106611081 106611531 -95716816 - L1PA15 LINE L1 -1 6164 5719 35 0 0 0 chr4 106611911 106611946 -95716401 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr4 106613848 106613890 -95714457 + AT_rich Low_complexity Low_complexity 1 42 0 324 185 0 15 chr4 106613979 106614108 -95714239 + AluJ/FRAM SINE Alu 219 346 0 545 252 149 37 chr4 106614514 106614756 -95713591 + Charlie2 DNA MER1_type 40 308 -2554 578 208 57 19 chr4 106614953 106615112 -95713235 + Charlie2a DNA MER1_type 1482 1646 -1216 380 236 8 89 chr4 106616763 106616886 -95711461 + MER81 DNA DNA 1 113 -1 4948 124 49 29 chr4 106617258 106618118 -95710229 - L1PA13 LINE L1 0 6163 5287 243 61 0 0 chr4 106618945 106618978 -95709369 + (CA)n Simple_repeat Simple_repeat 2 34 0 292 308 93 19 chr4 106619070 106619177 -95709170 + L2 LINE L2 3141 3255 -17 682 332 130 23 chr4 106619529 106620113 -95708234 - L2 LINE L2 -40 3273 2631 392 298 167 6 chr4 106620391 106620559 -95707788 + MIR SINE MIR 54 248 -14 232 338 14 14 chr4 106621176 106621250 -95707097 + L2 LINE L2 3139 3212 -60 534 264 126 6 chr4 106621440 106621614 -95706733 + LTR16A LTR ERVL 238 432 -18 23 54 0 0 chr4 106621925 106621962 -95706385 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 106624251 106624273 -95704074 + AT_rich Low_complexity Low_complexity 1 22 0 1449 173 122 0 chr4 106624413 106624691 -95703656 - AluJo SINE Alu 0 312 1 205 139 0 0 chr4 106624958 106624994 -95703353 + L2 LINE L2 3277 3312 -1 24 0 0 0 chr4 106625042 106625066 -95703281 + AT_rich Low_complexity Low_complexity 1 24 0 289 274 120 26 chr4 106625095 106625212 -95703135 - MIR SINE MIR 0 262 135 198 319 223 0 chr4 106625259 106625353 -95702994 - MIR SINE MIR -136 126 12 1553 148 37 19 chr4 106626174 106626444 -95701903 + AluJo SINE Alu 1 275 -37 1629 192 39 9 chr4 106626934 106627268 -95701079 - MER2 DNA MER2_type 0 344 1 337 343 42 6 chr4 106627272 106627432 -95700915 + MIR3 SINE MIR 15 184 -24 234 185 62 74 chr4 106630190 106630271 -95698076 - L1MC4 LINE L1 -1349 6693 6614 2011 124 7 0 chr4 106630676 106630966 -95697381 - AluSx SINE Alu 0 312 21 330 265 66 33 chr4 106631186 106631337 -95697010 - LTR33A LTR ERVL 0 523 368 235 301 189 13 chr4 106631573 106631726 -95696621 + MIR3 SINE MIR 20 199 -9 21 36 0 0 chr4 106631996 106632024 -95696323 + AT_rich Low_complexity Low_complexity 1 28 0 2697 32 0 0 chr4 106632403 106632716 -95695631 + AluYb8 SINE Alu 1 313 -5 31 44 0 0 chr4 106632845 106632890 -95695457 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr4 106633359 106633382 -95694965 + AT_rich Low_complexity Low_complexity 1 23 0 199 379 39 0 chr4 106633646 106633749 -95694598 - MIR3 SINE MIR -14 194 88 302 247 82 59 chr4 106633789 106633959 -95694388 + MIR SINE MIR 28 201 -61 27 0 0 0 chr4 106635220 106635247 -95693100 + AT_rich Low_complexity Low_complexity 1 27 0 443 319 88 0 chr4 106635602 106635762 -95692585 - MIR SINE MIR -88 174 1 22 35 0 0 chr4 106638070 106638099 -95690248 + AT_rich Low_complexity Low_complexity 1 29 0 186 43 0 0 chr4 106638560 106638583 -95689764 + (A)n Simple_repeat Simple_repeat 1 23 0 36 53 0 0 chr4 106639068 106639125 -95689222 + AT_rich Low_complexity Low_complexity 1 57 0 344 335 60 30 chr4 106640337 106640537 -95687810 - MIR SINE MIR -6 256 51 250 224 0 0 chr4 106640572 106640621 -95687726 + MIR SINE MIR 81 129 -79 22 0 0 0 chr4 106641012 106641034 -95687313 + AT_rich Low_complexity Low_complexity 1 22 0 325 257 37 37 chr4 106641034 106641143 -95687204 + MIR SINE MIR 154 262 0 508 333 73 0 chr4 106644561 106644753 -95683594 - MIR SINE MIR -1 261 56 24 85 0 0 chr4 106645883 106645942 -95682405 + AT_rich Low_complexity Low_complexity 1 59 0 423 283 40 46 chr4 106646041 106646214 -95682133 - MIR3 SINE MIR -19 189 18 487 312 0 16 chr4 106646765 106646890 -95681457 + MER5B DNA MER1_type 1 123 -55 422 320 64 75 chr4 106647181 106647462 -95680885 - L3 LINE CR1 -950 627 350 201 273 0 0 chr4 106647960 106648015 -95680332 + A-rich Low_complexity Low_complexity 1 55 0 1437 172 41 4 chr4 106648653 106648921 -95679426 - AluJo SINE Alu -34 278 1 21 0 0 0 chr4 106649616 106649637 -95678710 + AT_rich Low_complexity Low_complexity 1 21 0 248 385 148 7 chr4 106650868 106651003 -95677344 - L2 LINE L2 -9 3263 3110 1124 202 0 5 chr4 106651488 106651691 -95676656 + AluJo SINE Alu 88 289 -23 317 262 107 19 chr4 106653037 106653066 -95675281 + L2 LINE L2 3193 3218 -95 414 0 0 0 chr4 106653066 106653112 -95675235 + (TG)n Simple_repeat Simple_repeat 2 47 0 317 262 107 19 chr4 106653112 106653185 -95675162 + L2 LINE L2 3218 3304 -9 406 121 289 12 chr4 106654468 106654551 -95673796 - FRAM SINE Alu -17 149 44 283 296 177 15 chr4 106655700 106655903 -95672444 - MIR SINE MIR 0 262 27 581 187 106 0 chr4 106656128 106656251 -95672096 + MIR SINE MIR 102 237 -25 24 32 0 0 chr4 106656775 106656806 -95671541 + AT_rich Low_complexity Low_complexity 1 31 0 1909 94 0 110 chr4 106656807 106657135 -95671212 - AluSg1 SINE Alu -17 292 1 24 67 0 0 chr4 106657412 106657457 -95670890 + AT_rich Low_complexity Low_complexity 1 45 0 2043 112 7 26 chr4 106657534 106657839 -95670508 + AluSx SINE Alu 1 299 -13 186 379 43 50 chr4 106658589 106658869 -95669478 + L2 LINE L2 2819 3096 -176 1655 179 13 7 chr4 106659309 106659705 -95668642 - AluJo SINE Alu 0 398 1 25 31 0 0 chr4 106659901 106659933 -95668414 + AT_rich Low_complexity Low_complexity 1 32 0 3162 167 38 57 chr4 106660216 106660930 -95667417 - L1MC2 LINE L1 -13 6331 5632 198 179 26 0 chr4 106661246 106661285 -95667062 - L2 LINE L2 -10 3303 3264 225 0 0 0 chr4 106661633 106661658 -95666689 + (A)n Simple_repeat Simple_repeat 1 25 0 906 286 200 16 chr4 106663540 106663925 -95664422 - L2 LINE L2 -5 3308 2853 * 1946 282 99 30 chr4 106663916 106664050 -95664297 - L2 LINE L2 -940 2374 2251 2243 108 0 0 chr4 106664050 106664347 -95664000 + AluSx SINE Alu 3 299 -13 1946 282 99 30 chr4 106664347 106664982 -95663365 - L2 LINE L2 -1063 2251 1552 811 198 6 18 chr4 106667447 106667614 -95660733 - MER3 DNA MER1_type -41 168 4 367 261 27 36 chr4 106667859 106667970 -95660377 - MIR3 SINE MIR -3 205 96 546 16 0 0 chr4 106669102 106669165 -95659182 + (TG)n Simple_repeat Simple_repeat 2 64 0 1761 150 30 35 chr4 106669470 106669809 -95658538 - MER1B DNA MER1_type 0 337 1 196 158 35 0 chr4 106672032 106672089 -95656258 + G-rich Low_complexity Low_complexity 3 61 0 183 129 0 0 chr4 106672365 106672396 -95655951 + (CA)n Simple_repeat Simple_repeat 2 32 0 329 259 213 43 chr4 106672609 106672914 -95655433 - L1ME4a LINE L1 -11 6110 5754 411 21 0 0 chr4 106673381 106673429 -95654918 + (TG)n Simple_repeat Simple_repeat 2 49 0 521 261 98 20 chr4 106674045 106674248 -95654099 - L2 LINE L2 -1 3312 3094 276 348 119 27 chr4 106674370 106674663 -95653684 + MLT1K LTR MaLR 183 502 -86 248 192 0 19 chr4 106674813 106674865 -95653482 + MLT1K LTR MaLR 526 576 -12 1343 178 9 4 chr4 106675362 106675592 -95652755 + AluJb SINE Alu 1 231 -81 450 0 0 0 chr4 106675597 106675647 -95652700 + (CA)n Simple_repeat Simple_repeat 2 51 0 206 320 58 39 chr4 106677184 106677287 -95651060 + MIR SINE MIR 22 126 -82 908 189 47 0 chr4 106678183 106678352 -95649995 - MER20 DNA MER1_type 0 219 43 30 0 0 0 chr4 106678380 106678410 -95649937 + AT_rich Low_complexity Low_complexity 1 30 0 2865 9 0 0 chr4 106678535 106678851 -95649496 + AluYb8 SINE Alu 1 316 -2 198 0 0 0 chr4 106681855 106681877 -95646470 + (TA)n Simple_repeat Simple_repeat 2 23 0 2357 130 27 123 chr4 106681879 106682357 -95645990 + Tigger2 DNA MER2_type 1 2716 -2 405 0 0 0 chr4 106682357 106682402 -95645945 + (TG)n Simple_repeat Simple_repeat 2 46 0 684 157 19 0 chr4 106682405 106682513 -95645834 - Tigger3(Golem) DNA MER2_type 0 3038 2929 872 132 0 22 chr4 106682632 106682768 -95645579 - FLAM_C SINE Alu 0 133 1 616 181 121 0 chr4 106682906 106683022 -95645325 - FLAM_A SINE Alu -3 130 1 471 167 13 0 chr4 106683031 106683109 -95645238 - Tigger3(Golem) DNA MER2_type -2950 79 1 198 337 116 0 chr4 106683415 106683501 -95644846 - L2 LINE L2 -3 3269 3174 21 36 0 0 chr4 106683989 106684017 -95644330 + AT_rich Low_complexity Low_complexity 1 28 0 1720 150 11 11 chr4 106684028 106684308 -95644039 + AluSx SINE Alu 1 280 -32 248 101 79 0 chr4 106684921 106685010 -95643337 + (TA)n Simple_repeat Simple_repeat 1 96 0 2139 112 3 3 chr4 106685011 106685306 -95643041 - AluSg SINE Alu -15 295 1 35 0 0 0 chr4 106685330 106685365 -95642982 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr4 106685396 106685440 -95642907 + AT_rich Low_complexity Low_complexity 1 44 0 300 288 144 0 chr4 106685736 106685861 -95642486 + MIR3 SINE MIR 55 197 -11 1032 93 7 0 chr4 106686049 106686188 -95642159 - AluSp/q SINE Alu -16 297 158 248 226 105 40 chr4 106686952 106687076 -95641271 - L1ME LINE L1 -213 5908 5777 1413 175 89 0 chr4 106691972 106692241 -95636106 - AluJo SINE Alu -19 293 1 1105 187 5 5 chr4 106692446 106692673 -95635674 + AluJb SINE Alu 88 314 0 1324 188 28 0 chr4 106693934 106694184 -95634163 + AluJo SINE Alu 21 277 -35 421 318 46 12 chr4 106694761 106694934 -95633413 - MIR SINE MIR -6 256 78 1790 154 0 0 chr4 106695014 106695281 -95633066 + AluSx SINE Alu 1 267 -45 286 282 13 0 chr4 106695532 106695610 -95632737 - MIR SINE MIR -1 261 183 306 237 0 13 chr4 106695787 106695863 -95632484 - Tigger5 DNA MER2_type 0 2323 2249 26 30 0 0 chr4 106695925 106695958 -95632389 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr4 106695999 106696023 -95632324 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr4 106696125 106696148 -95632199 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 106696214 106696244 -95632103 + AT_rich Low_complexity Low_complexity 1 30 0 699 226 0 0 chr4 106696710 106696843 -95631504 - FLAM_C SINE Alu 0 133 1 2150 60 4 4 chr4 106697842 106698109 -95630238 + AluY SINE Alu 44 310 -1 1673 209 29 6 chr4 106698527 106698876 -95629471 + MLT1A1 LTR MaLR 9 365 0 349 256 11 11 chr4 106698884 106698974 -95629373 - MIR SINE MIR -117 145 56 536 265 31 25 chr4 106699124 106699286 -95629061 - MLT1J LTR MaLR -1 510 348 1091 118 51 0 chr4 106699289 106699467 -95628880 + MER107 DNA MER1_type 1 187 -10 642 270 118 26 chr4 106699488 106699758 -95628589 - MLT1J LTR MaLR -202 309 15 363 23 0 0 chr4 106700770 106700814 -95627533 + (CA)n Simple_repeat Simple_repeat 2 45 0 660 316 45 16 chr4 106701294 106701538 -95626809 + MIR SINE MIR 12 262 0 21 0 0 0 chr4 106702548 106702569 -95625778 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 106702937 106702958 -95625389 + AT_rich Low_complexity Low_complexity 1 21 0 221 250 0 0 chr4 106703654 106703698 -95624649 + (CA)n Simple_repeat Simple_repeat 1 44 0 273 119 0 0 chr4 106703969 106704011 -95624336 + (TATG)n Simple_repeat Simple_repeat 3 44 0 189 74 0 0 chr4 106704010 106704037 -95624310 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 804 194 176 73 chr4 106705719 106705923 -95622424 + MLT1A1 LTR MaLR 2 254 -111 2206 109 3 7 chr4 106705923 106706225 -95622122 - AluSx SINE Alu -11 301 1 804 194 176 73 chr4 106706225 106706350 -95621997 + MLT1A1 LTR MaLR 254 365 0 202 320 48 29 chr4 106706569 106706672 -95621675 + MIR3 SINE MIR 104 208 0 791 224 38 68 chr4 106707203 106707346 -95621001 - MIR SINE MIR -1 261 115 1877 108 37 15 chr4 106707346 106707614 -95620733 + AluSx SINE Alu 1 274 -38 871 68 14 27 chr4 106707616 106707764 -95620583 + (GGAA)n Simple_repeat Simple_repeat 3 148 0 791 224 38 68 chr4 106707764 106707854 -95620493 - MIR SINE MIR -148 114 32 203 291 25 63 chr4 106708500 106708579 -95619768 - MER5B DNA MER1_type -16 162 87 387 290 28 0 chr4 106708605 106708712 -95619635 - MER5B DNA MER1_type -58 120 11 555 239 194 13 chr4 106708739 106708894 -95619453 - MER5A DNA MER1_type -6 183 1 331 312 21 0 chr4 106709044 106709137 -95619210 + MIR SINE MIR 165 259 -3 1713 148 11 4 chr4 106709394 106709657 -95618690 + AluSx SINE Alu 25 289 -23 273 336 82 8 chr4 106709785 106709919 -95618428 + MIR SINE MIR 48 191 -71 10231 140 49 15 chr4 106712089 106713960 -95614387 + Tigger1 DNA MER2_type 1 1935 -483 1253 156 21 25 chr4 106713970 106714208 -95614139 + Tigger1 DNA MER2_type 2182 2418 0 291 255 53 21 chr4 106714692 106714786 -95613561 + MIR SINE MIR 11 107 -155 249 309 134 10 chr4 106714944 106715041 -95613306 - L2 LINE L2 -37 3235 3127 207 338 25 70 chr4 106715446 106715603 -95612744 - L2 LINE L2 -591 2723 2574 192 306 131 59 chr4 106715706 106715928 -95612419 - L2 LINE L2 -1023 2291 2054 488 312 68 24 chr4 106716155 106716405 -95611942 - MIR SINE MIR -1 261 1 305 343 14 41 chr4 106716405 106716551 -95611796 + L3 LINE CR1 1436 1577 0 1799 152 9 73 chr4 106716611 106716940 -95611407 - AluJo SINE Alu -4 308 1 214 320 77 0 chr4 106717055 106717133 -95611214 + L2 LINE L2 3189 3272 0 2106 129 3 0 chr4 106717653 106717948 -95610399 - AluSq SINE Alu -17 296 1 648 342 106 16 chr4 106719363 106719437 -95608910 + L3 LINE CR1 1095 1161 -416 2097 118 0 53 chr4 106719437 106719758 -95608589 + AluSq SINE Alu 1 304 -9 648 342 106 16 chr4 106719758 106719803 -95608544 + L3 LINE CR1 1161 1201 -376 2225 109 10 10 chr4 106719803 106720115 -95608232 + AluSx SINE Alu 1 312 0 648 342 106 16 chr4 106720115 106720427 -95607920 + L3 LINE CR1 1201 1566 -11 181 286 0 0 chr4 106720540 106720582 -95607765 + MIR3 SINE MIR 161 202 -6 444 269 155 30 chr4 106720609 106720970 -95607377 - L3b LINE CR1 -76 1507 1102 329 343 66 73 chr4 106721970 106722244 -95606103 - L2 LINE L2 -1 3271 3000 194 320 13 13 chr4 106723202 106723277 -95605070 - L2 LINE L2 0 3272 3198 518 157 294 0 chr4 106724728 106724830 -95603517 - FLAM_C SINE Alu -1 132 1 25 0 0 0 chr4 106729612 106729637 -95598710 + GC_rich Low_complexity Low_complexity 1 25 0 219 88 0 0 chr4 106729700 106729734 -95598613 + (AGGGGG)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr4 106730074 106730095 -95598252 + GC_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr4 106730394 106730421 -95597926 + (CCG)n Simple_repeat Simple_repeat 3 29 0 224 214 18 0 chr4 106730490 106730546 -95597801 + (CCG)n Simple_repeat Simple_repeat 1 57 0 415 256 78 126 chr4 106730787 106731263 -95597084 + L1M2 LINE L1 662 1114 -5735 315 0 0 0 chr4 106732488 106732523 -95595824 + (CA)n Simple_repeat Simple_repeat 2 36 0 185 222 77 128 chr4 106732827 106732944 -95595403 - L2 LINE L2 -4 3309 3199 2199 157 3 3 chr4 106733671 106734008 -95594339 - MER1B DNA MER1_type 0 337 1 23 0 0 0 chr4 106735116 106735139 -95593208 + AT_rich Low_complexity Low_complexity 1 23 0 2294 121 0 0 chr4 106735255 106735560 -95592787 + AluSg SINE Alu 1 305 -5 274 261 11 65 chr4 106736128 106736220 -95592127 + L2 LINE L2 3223 3309 -4 423 0 0 0 chr4 106736334 106736381 -95591966 + (CA)n Simple_repeat Simple_repeat 2 48 0 2108 139 3 0 chr4 106736991 106737285 -95591062 + AluSx SINE Alu 1 295 -17 1822 284 133 39 chr4 106737292 106737427 -95590920 - L2 LINE L2 -18 3295 3174 207 0 0 0 chr4 106737427 106737450 -95590897 + (CA)n Simple_repeat Simple_repeat 2 24 0 1822 284 133 39 chr4 106737450 106737534 -95590813 - L2 LINE L2 -139 3174 3099 1797 191 12 3 chr4 106737534 106737874 -95590473 - MER2 DNA MER2_type -1 343 1 1822 284 133 39 chr4 106737874 106738921 -95589426 - L2 LINE L2 -214 3099 1884 468 271 57 61 chr4 106738934 106739181 -95589166 + L2 LINE L2 3059 3304 -9 311 271 65 52 chr4 106740727 106740882 -95587465 - MLT1I LTR MaLR -243 166 10 180 111 0 0 chr4 106741009 106741036 -95587311 + (CA)n Simple_repeat Simple_repeat 2 28 0 24 32 0 0 chr4 106741047 106741078 -95587269 + AT_rich Low_complexity Low_complexity 1 31 0 579 304 98 21 chr4 106741196 106741633 -95586714 - LTR16C LTR ERVL -18 473 3 4034 124 3 0 chr4 106742509 106743116 -95585231 + L1MC1 LINE L1 5711 6319 -14 278 278 14 0 chr4 106743357 106743429 -95584918 + Charlie2a DNA MER1_type 248 320 -2462 581 205 32 37 chr4 106743618 106743808 -95584539 + Charlie2a DNA MER1_type 1467 1655 -1207 723 226 71 22 chr4 106744331 106744557 -95583790 - LTR16A1 LTR ERVL -26 431 195 2413 86 0 6 chr4 106744732 106745046 -95583301 + AluSp SINE Alu 1 312 -1 198 429 0 10 chr4 106745073 106745171 -95583176 - MIR SINE MIR -73 135 39 334 321 68 0 chr4 106745302 106745464 -95582883 + MIR SINE MIR 84 256 -6 1230 187 0 0 chr4 106745534 106745743 -95582604 + AluSg/x SINE Alu 104 312 0 323 196 34 135 chr4 106745744 106745892 -95582455 - L1ME3A LINE L1 -124 6046 5914 1543 169 99 7 chr4 106745914 106746198 -95582149 + AluJb SINE Alu 3 312 0 40 21 0 0 chr4 106746305 106746352 -95581995 + AT_rich Low_complexity Low_complexity 1 47 0 1151 297 75 14 chr4 106746400 106747451 -95580896 - L1ME3A LINE L1 -410 5760 4651 1117 123 60 86 chr4 106747470 106747739 -95580608 + L1MA4 LINE L1 6028 6289 -11 24 0 0 0 chr4 106747740 106747764 -95580583 + AT_rich Low_complexity Low_complexity 1 24 0 225 250 156 8 chr4 106747785 106747913 -95580434 - L1 LINE L1 -1543 4603 4457 2660 104 3 3 chr4 106747929 106748304 -95580043 + THE1C LTR MaLR 1 375 0 21 71 0 0 chr4 106748613 106748655 -95579692 + AT_rich Low_complexity Low_complexity 1 42 0 441 313 86 28 chr4 106748655 106749051 -95579296 - L1ME3A LINE L1 -223 5947 5529 460 289 0 35 chr4 106749090 106749287 -95579060 + L1M4 LINE L1 2497 2686 -3460 1105 279 101 16 chr4 106749420 106749874 -95578473 + MLT2E LTR ERVL 10 549 -79 1478 199 87 51 chr4 106750283 106750359 -95577988 + L1MCa LINE L1 1 73 -6353 2163 81 39 26 chr4 106750359 106750666 -95577681 + AluY SINE Alu 1 311 0 1478 199 87 51 chr4 106750666 106750980 -95577367 + L1MCa LINE L1 73 405 -6021 4308 195 62 30 chr4 106750983 106751582 -95576765 + L1MCa LINE L1 486 1064 -5362 1747 194 0 25 chr4 106751582 106751902 -95576445 + AluJo SINE Alu 1 312 0 4308 195 62 30 chr4 106751902 106753973 -95574374 + L1MCa LINE L1 1064 3321 -3105 1038 138 12 100 chr4 106753973 106754213 -95574134 + AluJo SINE Alu 85 303 -9 502 127 9 18 chr4 106754226 106754336 -95574011 + L1MCa LINE L1 3414 3522 -2904 288 188 0 0 chr4 106754333 106754381 -95573966 + L1M1 LINE L1 1423 1470 -6095 * 300 158 0 0 chr4 106754395 106754452 -95573895 + CT-rich Low_complexity Low_complexity 2 58 0 1947 118 9 50 chr4 106754452 106754774 -95573573 - AluSx SINE Alu -1 311 3 8383 142 14 4 chr4 106754806 106755307 -95573040 - L1MA1 LINE L1 -10 6292 5798 288 0 0 0 chr4 106755307 106755339 -95573008 + (TG)n Simple_repeat Simple_repeat 2 33 0 8383 142 14 4 chr4 106755339 106757327 -95571020 - L1MA1 LINE L1 -504 5798 3776 9914 139 22 9 chr4 106757365 106757658 -95570689 + L1M1 LINE L1 1461 1749 -5816 489 17 0 0 chr4 106757658 106757716 -95570631 + (CA)n Simple_repeat Simple_repeat 2 59 0 9914 139 22 9 chr4 106757716 106759034 -95569313 + L1M1 LINE L1 1749 3094 -4471 648 296 57 19 chr4 106759164 106759179 -95569168 + L1ME3A LINE L1 4616 4629 -1517 2047 131 3 3 chr4 106759179 106759485 -95568862 + AluSx SINE Alu 1 306 -6 648 296 57 19 chr4 106759485 106759945 -95568402 + L1ME3A LINE L1 4629 5109 -1037 804 333 62 6 chr4 106760023 106760543 -95567804 + L1ME3A LINE L1 5295 5843 -327 10138 206 18 16 chr4 106761300 106762447 -95565900 - L1PA16 LINE L1 0 6166 5023 1738 191 0 0 chr4 106762447 106762752 -95565595 - AluJb SINE Alu 0 307 3 10138 206 18 16 chr4 106762752 106764521 -95563826 - L1PA16 LINE L1 -1143 5023 3235 2332 74 7 0 chr4 106764521 106764830 -95563517 - AluY SINE Alu 0 311 1 10138 206 18 16 chr4 106764830 106765330 -95563017 - L1PA16 LINE L1 -2931 3235 2737 273 279 24 94 chr4 106765359 106765646 -95562701 - L1MEd LINE L1 -2000 4129 3863 404 299 121 36 chr4 106765738 106766207 -95562140 - L1MEd LINE L1 -3404 2725 2203 228 261 0 43 chr4 106766296 106766388 -95561959 + T-rich Low_complexity Low_complexity 6 93 0 1597 79 5 0 chr4 106766509 106766725 -95561622 - L1PA7 LINE L1 0 6154 5938 384 292 64 48 chr4 106767073 106767323 -95561024 - L1MEd LINE L1 -4501 1628 1375 2108 70 0 19 chr4 106767339 106767609 -95560738 + AluY SINE Alu 33 297 -14 14175 178 22 21 chr4 106767609 106768073 -95560274 - L1PB1 LINE L1 -6 6861 6399 2039 139 0 3 chr4 106768073 106768367 -95559980 - AluSg SINE Alu -17 293 1 14175 178 22 21 chr4 106768367 106770118 -95558229 - L1PB1 LINE L1 -468 6399 4650 2435 81 0 3 chr4 106770118 106770415 -95557932 - AluY SINE Alu -14 297 2 14175 178 22 21 chr4 106770415 106773640 -95554707 - L1PB1 LINE L1 -2217 4650 1392 797 204 16 11 chr4 106773637 106773828 -95554519 - L1PB1 LINE L1 -6666 197 6 * 5980 164 13 5 chr4 106773932 106775951 -95552396 + L1PB3 LINE L1 4124 6154 0 1269 312 78 42 chr4 106775977 106777085 -95551262 - L1MEd LINE L1 -4870 1249 101 1381 211 36 41 chr4 106777341 106777781 -95550566 - Charlie1 DNA MER1_type -35 2726 2289 264 59 0 0 chr4 106779486 106779520 -95548827 + (TA)n Simple_repeat Simple_repeat 1 34 0 738 211 61 28 chr4 106780327 106780507 -95547840 + MER5A DNA MER1_type 2 187 -2 573 314 6 0 chr4 106781130 106781299 -95547048 + MIR SINE MIR 80 249 -13 2398 87 3 0 chr4 106781423 106781732 -95546615 + AluSp SINE Alu 1 310 -3 2100 148 3 0 chr4 106782077 106782387 -95545960 - AluSx SINE Alu -1 311 1 264 222 0 14 chr4 106782446 106782518 -95545829 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 1412 197 78 44 chr4 106784882 106785243 -95543104 + MLT1B LTR MaLR 1 373 -17 6326 75 1 0 chr4 106785253 106786070 -95542277 + L1PA10 LINE L1 5351 6168 0 36 77 0 0 chr4 106786468 106786546 -95541801 + AT_rich Low_complexity Low_complexity 1 78 0 2023 149 0 10 chr4 106786586 106786721 -95541626 + AluSx SINE Alu 1 136 -176 2350 91 0 3 chr4 106786721 106787019 -95541328 + AluY SINE Alu 1 297 -14 2023 149 0 10 chr4 106787019 106787184 -95541163 + AluSx SINE Alu 136 298 -14 27 29 0 0 chr4 106787228 106787262 -95541085 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr4 106787324 106787348 -95540999 + AT_rich Low_complexity Low_complexity 1 24 0 1815 227 76 16 chr4 106787353 106787842 -95540505 + LTR40a LTR ERVL 1 518 -1 243 0 0 0 chr4 106787845 106787872 -95540475 + (CA)n Simple_repeat Simple_repeat 2 28 0 1520 194 40 3 chr4 106788223 106788353 -95539994 + AluJb SINE Alu 1 125 -187 1838 152 21 0 chr4 106788353 106788643 -95539704 + AluSx SINE Alu 4 299 -13 1520 194 40 3 chr4 106788643 106788811 -95539536 + AluJb SINE Alu 125 310 -2 42387 36 22 1 chr4 106789184 106795212 -95533135 - L1PA2 LINE L1 -3 6152 1 218 256 47 35 chr4 106796179 106796265 -95532082 + MIR SINE MIR 40 126 -136 4797 61 11 2 chr4 106796442 106797068 -95531279 + L1PA7 LINE L1 5325 5956 -198 1493 93 10 0 chr4 106797068 106797262 -95531085 + AluSc SINE Alu 95 290 -19 922 168 103 0 chr4 106798135 106798349 -95529998 + L1MA8 LINE L1 6052 6287 -4 2442 77 0 3 chr4 106798358 106798657 -95529690 + AluY SINE Alu 5 302 -9 1432 170 0 8 chr4 106798773 106799026 -95529321 - L1PB1 LINE L1 -3 6148 5898 816 58 0 0 chr4 106799026 106799127 -95529220 + L1PA2 LINE L1 6051 6154 -1 2108 111 3 10 chr4 106799306 106799603 -95528744 - AluSc SINE Alu -14 295 1 1086 170 65 0 chr4 106800012 106800212 -95528135 + MER2 DNA MER2_type 2 214 -131 1473 169 74 18 chr4 106800214 106800498 -95527849 - MER1B DNA MER1_type -2 337 38 1887 138 17 3 chr4 106800739 106801029 -95527318 - AluSx SINE Alu -18 294 1 24 67 0 0 chr4 106801188 106801233 -95527114 + AT_rich Low_complexity Low_complexity 1 45 0 1851 139 30 0 chr4 106801355 106801656 -95526691 - THE1C LTR MaLR 0 375 66 649 276 108 6 chr4 106801789 106802151 -95526196 - L1MC4a LINE L1 -304 5817 5543 23 0 0 0 chr4 106802440 106802463 -95525884 + AT_rich Low_complexity Low_complexity 1 23 0 1439 197 35 62 chr4 106802932 106803303 -95525044 + MLT1A1 LTR MaLR 5 365 0 951 167 0 39 chr4 106803436 106803616 -95524731 - MER49 LTR ERV1 0 923 751 666 172 0 0 chr4 106804467 106804595 -95523752 + GA-rich Low_complexity Low_complexity 3 130 0 1287 170 97 86 chr4 106804692 106805063 -95523284 + THE1C LTR MaLR 1 375 0 7337 180 90 21 chr4 106805367 106806922 -95521425 - MER52A LTR ERV1 0 1755 221 289 233 125 17 chr4 106807064 106807184 -95521163 + L1ME4a LINE L1 5784 5916 -205 205 337 0 0 chr4 106807216 106807299 -95521048 + (CATA)n Simple_repeat Simple_repeat 3 85 0 393 134 0 52 chr4 106809418 106809515 -95518832 + (TTCC)n Simple_repeat Simple_repeat 3 94 0 195 253 149 23 chr4 106809557 106809644 -95518703 + MIR SINE MIR 116 213 -49 21 0 0 0 chr4 106809826 106809847 -95518500 + AT_rich Low_complexity Low_complexity 1 21 0 228 204 41 51 chr4 106810250 106810348 -95517999 - L1MC5 LINE L1 -54 7907 7811 3187 158 17 12 chr4 106810692 106811286 -95517061 - L1MA4A LINE L1 -11 6292 5696 2306 167 7 35 chr4 106813772 106814202 -95514145 - MER47B DNA MER2_type 0 418 1 484 273 32 126 chr4 106814289 106814663 -95513684 - MER102b DNA MER1_type -1 340 2 1089 166 62 53 chr4 106814678 106814998 -95513349 - MER33 DNA MER1_type 0 324 2 219 399 35 0 chr4 106815225 106815368 -95512979 - L3 LINE CR1 -60 1517 1370 256 290 196 9 chr4 106815482 106815589 -95512758 + L3 LINE CR1 1370 1496 -81 614 265 59 9 chr4 106815738 106816106 -95512241 - L1MC4a LINE L1 -743 5403 5060 705 209 111 27 chr4 106816203 106816428 -95511919 + LTR54B LTR ERV1 3 246 -252 353 238 71 8 chr4 106816432 106816558 -95511789 - L1MC4a LINE L1 -2171 3975 3842 1336 239 60 21 chr4 106816794 106817265 -95511082 - L1MD3 LINE L1 0 8041 7563 * 5019 207 78 71 chr4 106817262 106818257 -95510090 - L1 LINE L1 -1755 4391 3405 2198 87 0 10 chr4 106818257 106818546 -95509801 - AluY SINE Alu -23 288 3 5019 207 78 71 chr4 106818546 106818921 -95509426 - L1 LINE L1 -2741 3405 3004 985 170 25 0 chr4 106818921 106819080 -95509267 - FRAM SINE Alu -2 164 2 5019 207 78 71 chr4 106819080 106819412 -95508935 - L1 LINE L1 -3142 3004 2676 889 143 36 14 chr4 106819526 106819666 -95508681 + AluJo SINE Alu 1 143 -169 397 329 13 60 chr4 106819994 106820103 -95508244 + ERVL LTR ERVL 5064 5158 -606 2283 98 3 13 chr4 106820103 106820408 -95507939 + AluSg SINE Alu 1 302 -8 397 329 13 60 chr4 106820408 106820532 -95507815 + ERVL LTR ERVL 5158 5286 -478 927 171 0 23 chr4 106820846 106821022 -95507325 - L1MA4 LINE L1 -437 5863 5692 22 35 0 0 chr4 106821891 106821920 -95506427 + AT_rich Low_complexity Low_complexity 1 29 0 2111 155 12 0 chr4 106821920 106822262 -95506085 + MER7A DNA MER2_type 2 345 -1 220 348 22 0 chr4 106822297 106822389 -95505958 + L2 LINE L2 3220 3313 0 391 241 160 32 chr4 106822897 106823084 -95505263 - MER112 DNA MER1_type -48 212 2 349 266 75 70 chr4 106823098 106823131 -95505216 - L2 LINE L2 -1212 2102 2071 2320 90 0 26 chr4 106823131 106823443 -95504904 + AluY SINE Alu 1 304 -7 349 266 75 70 chr4 106823443 106823650 -95504697 - L2 LINE L2 -1243 2071 1861 207 186 0 0 chr4 106823810 106823853 -95504494 + (CACCAT)n Simple_repeat Simple_repeat 2 44 0 339 229 108 0 chr4 106824127 106824210 -95504137 - MIR SINE MIR -17 245 154 2520 65 0 0 chr4 106824333 106824643 -95503704 + AluY SINE Alu 1 310 -1 414 0 0 0 chr4 106824652 106824698 -95503649 + (GA)n Simple_repeat Simple_repeat 1 46 0 834 296 82 44 chr4 106826422 106826898 -95501449 + MLT1G1 LTR MaLR 102 595 0 248 306 93 9 chr4 106827242 106827350 -95500997 + L2 LINE L2 3141 3257 -15 2182 99 14 0 chr4 106827621 106827789 -95500558 - AluY SINE Alu -11 300 125 183 42 0 0 chr4 106827789 106827813 -95500534 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2182 99 14 0 chr4 106827813 106827938 -95500409 - AluY SINE Alu -186 125 3 2539 53 0 0 chr4 106828198 106828498 -95499849 - AluY SINE Alu -11 300 1 277 244 61 24 chr4 106828865 106828947 -95499400 + LTR33 LTR ERVL 1 85 -436 680 67 0 0 chr4 106828947 106829037 -95499310 - AluY SINE Alu -9 302 213 564 309 5 43 chr4 106829037 106829244 -95499103 + LTR33 LTR ERVL 70 268 -253 1940 72 0 0 chr4 106829688 106829950 -95498397 + L1P LINE L1 5012 5273 -873 9678 146 17 7 chr4 106830052 106831568 -95496779 - L1PA12 LINE L1 -5147 2434 903 17425 53 1 1 chr4 106831587 106833808 -95494539 + L1P LINE L1 2099 4320 -1826 3756 77 13 0 chr4 106833916 106834618 -95493729 - L1PA8A LINE L1 -364 5767 5059 3784 110 9 7 chr4 106834618 106835192 -95493155 + L1PA8A LINE L1 4500 5074 -1072 5720 174 10 7 chr4 106835767 106835855 -95492492 - L1PB1 LINE L1 -270 5881 5795 288 70 0 0 chr4 106835855 106835898 -95492449 + (TG)n Simple_repeat Simple_repeat 2 44 0 5720 174 10 7 chr4 106835898 106835913 -95492434 - L1PB1 LINE L1 -356 5795 5782 1997 131 0 3 chr4 106835913 106836218 -95492129 - AluSg1 SINE Alu 0 304 1 5720 174 10 7 chr4 106836218 106837875 -95490472 - L1PB1 LINE L1 -369 5782 4118 312 365 28 7 chr4 106838415 106838560 -95489787 + MIR3 SINE MIR 16 163 -45 13061 165 27 13 chr4 106839069 106841329 -95487018 + L1PB1 LINE L1 998 3226 -3641 2268 109 0 3 chr4 106841329 106841640 -95486707 + AluY SINE Alu 1 310 -1 13061 165 27 13 chr4 106841640 106841892 -95486455 + L1PB1 LINE L1 3226 3473 -3394 252 0 0 0 chr4 106841892 106841920 -95486427 + (CAA)n Simple_repeat Simple_repeat 2 29 0 13061 165 27 13 chr4 106841920 106844865 -95483482 + L1PB1 LINE L1 3473 6857 -10 244 379 23 11 chr4 106846038 106846125 -95482222 + L2 LINE L2 3153 3240 -32 344 77 19 0 chr4 106846161 106846213 -95482134 + (CA)n Simple_repeat Simple_repeat 1 53 0 360 320 90 30 chr4 106846646 106846846 -95481501 + MIR SINE MIR 24 235 -27 196 352 0 0 chr4 106847201 106847255 -95481092 + MER5B DNA MER1_type 1 54 -124 2093 104 4 0 chr4 106847363 106847642 -95480705 + AluY SINE Alu 1 280 -31 251 259 98 140 chr4 106847722 106847865 -95480482 + MER5A DNA MER1_type 3 139 -50 2159 113 0 10 chr4 106847994 106848294 -95480053 + AluSg SINE Alu 1 297 -13 3254 134 28 4 chr4 106848717 106849261 -95479086 + L1MA4A LINE L1 5736 6292 -11 2012 157 0 0 chr4 106849558 106849870 -95478477 + AluSx SINE Alu 1 312 0 1259 240 5 45 chr4 106850731 106851131 -95477216 - L1M4 LINE L1 -919 5227 4844 2050 219 63 23 chr4 106851133 106851612 -95476735 - MLT1D LTR MaLR -2 503 6 393 252 29 29 chr4 106851614 106851753 -95476594 - L1PA12 LINE L1 -1295 6289 6151 9267 268 34 21 chr4 106851880 106852102 -95476245 - L1PA12 LINE L1 -1500 6084 5866 288 53 0 0 chr4 106852102 106852140 -95476207 + (TG)n Simple_repeat Simple_repeat 1 38 0 9267 268 34 21 chr4 106852140 106852238 -95476109 - L1PA12 LINE L1 -1718 5866 5771 2193 100 20 3 chr4 106852238 106852539 -95475808 + AluY SINE Alu 1 306 -5 9267 268 34 21 chr4 106852539 106855458 -95472889 - L1PA12 LINE L1 -1813 5771 2799 8007 228 46 37 chr4 106855458 106858859 -95469488 + L1MC1 LINE L1 2112 5481 -1132 212 0 36 0 chr4 106858859 106858887 -95469460 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 8007 228 46 37 chr4 106858887 106858923 -95469424 + L1MC1 LINE L1 5481 5515 -1098 7426 39 0 5 chr4 106858923 106860272 -95468075 - L1PA4 LINE L1 0 6155 4809 8007 228 46 37 chr4 106860272 106861065 -95467282 + L1MC1 LINE L1 5515 6299 -314 1681 162 99 17 chr4 106861065 106861410 -95466937 + THE1C LTR MaLR 3 375 0 8007 228 46 37 chr4 106861410 106861430 -95466917 + L1MC1 LINE L1 6299 6317 -296 2167 120 3 0 chr4 106861430 106861721 -95466626 + AluSx SINE Alu 1 292 -20 8007 228 46 37 chr4 106861721 106861837 -95466510 + L1MC1 LINE L1 6317 6430 -183 360 0 0 0 chr4 106861837 106861877 -95466470 + (TG)n Simple_repeat Simple_repeat 1 40 0 8007 228 46 37 chr4 106861877 106861973 -95466374 + L1MC1 LINE L1 6430 6608 -5 198 0 0 0 chr4 106862602 106862624 -95465723 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1604 217 19 29 chr4 106862964 106863342 -95465005 - MLT1A2 LTR MaLR 0 374 1 324 298 32 0 chr4 106863342 106863436 -95464911 - MIR SINE MIR -78 184 88 1980 163 45 55 chr4 106863740 106864140 -95464207 + MER61B LTR ERV1 1 396 -29 1399 140 51 89 chr4 106864261 106864459 -95463888 - AluJo SINE Alu -30 282 97 1555 155 86 47 chr4 106864459 106864820 -95463527 - THE1C LTR MaLR 0 375 1 1399 140 51 89 chr4 106864820 106864914 -95463433 - AluJo SINE Alu -215 97 1 274 286 0 20 chr4 106865021 106865119 -95463228 + (TA)n Simple_repeat Simple_repeat 1 96 0 2309 91 0 19 chr4 106865599 106865907 -95462440 + AluSc SINE Alu 1 302 -7 195 42 0 0 chr4 106866158 106866182 -95462165 + (A)n Simple_repeat Simple_repeat 1 24 0 276 236 86 121 chr4 106867504 106867575 -95460772 + MIR SINE MIR 67 139 -123 2216 114 3 0 chr4 106867575 106867881 -95460466 - AluY SINE Alu -4 307 1 276 236 86 121 chr4 106867881 106867983 -95460364 + MIR SINE MIR 139 234 -28 542 101 34 92 chr4 106868161 106868218 -95460129 + Tigger2a DNA MER2_type 1 49 -2659 22861 31 1 0 chr4 106868218 106871746 -95456601 - L1PA3 LINE L1 0 6155 2624 542 101 34 92 chr4 106871746 106871807 -95456540 + Tigger2a DNA MER2_type 49 112 -322 319 239 9 28 chr4 106871819 106871928 -95456419 - L1MC/D LINE L1 -2037 5771 5665 1283 273 96 45 chr4 106873432 106874261 -95454086 + L2 LINE L2 2414 3294 -19 428 351 54 22 chr4 106874479 106874664 -95453683 + MIR SINE MIR 32 222 -40 288 260 102 47 chr4 106877191 106877318 -95451029 + MIR SINE MIR 111 244 -18 830 307 111 10 chr4 106878344 106878732 -95449615 + LTR33 LTR ERVL 15 441 -80 2125 309 86 28 chr4 106879927 106880920 -95447427 + ERVL LTR ERVL 1997 3046 -2718 837 269 73 7 chr4 106880900 106881191 -95447156 + ERVL LTR ERVL 4155 4449 -1036 * 336 340 0 0 chr4 106881273 106881370 -95446977 + ERVL LTR ERVL 4602 4698 -1066 212 182 0 18 chr4 106881409 106881464 -95446883 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 348 302 68 11 chr4 106881604 106881726 -95446621 - ERVL LTR ERVL -2738 2747 2637 927 333 48 9 chr4 106881765 106882200 -95446147 - MER110-int LTR ERV1 -2044 2603 2152 350 167 0 42 chr4 106882369 106882381 -95445966 + AluSp/q SINE Alu 233 244 -59 1580 96 0 0 chr4 106882381 106882580 -95445767 + AluSx SINE Alu 2 200 -112 350 167 0 42 chr4 106882580 106882639 -95445708 + AluSp/q SINE Alu 244 301 -2 1742 182 7 7 chr4 106884629 106884920 -95443427 + AluJb SINE Alu 1 291 -21 989 242 127 40 chr4 106885060 106885501 -95442846 + MER66A LTR ERV1 97 478 0 219 286 175 63 chr4 106885634 106885903 -95442444 + L2 LINE L2 2202 2500 -814 237 282 0 107 chr4 106886049 106886152 -95442195 + L2 LINE L2 3177 3268 -4 221 347 165 11 chr4 106886339 106886515 -95441832 + MIR SINE MIR 2 204 -58 1360 121 10 5 chr4 106886923 106887129 -95441218 - AluSq SINE Alu -106 207 1 21 0 0 0 chr4 106887170 106887191 -95441156 + AT_rich Low_complexity Low_complexity 1 21 0 2319 166 21 28 chr4 106887227 106887650 -95440697 + LOR1b LTR ERV1 42 461 0 1955 111 0 0 chr4 106888608 106888861 -95439486 - AluSg SINE Alu -57 253 1 219 165 253 51 chr4 106888934 106889013 -95439334 + MIR SINE MIR 107 202 -6 1833 198 132 77 chr4 106889300 106890006 -95438341 - LTR1B LTR ERV1 -81 745 1 412 338 85 20 chr4 106890909 106891202 -95437145 + L2 LINE L2 2297 2608 -706 902 230 59 16 chr4 106891212 106891531 -95436816 - MSTD LTR MaLR -7 389 1 561 320 81 54 chr4 106891531 106891792 -95436555 + L2 LINE L2 2673 2925 -347 4146 209 36 38 chr4 106891792 106892832 -95435515 + MER45B DNA AcHobo 2 1040 0 561 320 81 54 chr4 106892832 106893160 -95435187 + L2 LINE L2 2925 3272 0 22 0 0 0 chr4 106893397 106893419 -95434928 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr4 106893514 106893540 -95434807 + AT_rich Low_complexity Low_complexity 1 26 0 296 306 87 27 chr4 106893560 106893743 -95434604 + MER117 DNA MER1_type 2 195 -2 1358 293 71 17 chr4 106894451 106895248 -95433099 + L1M4 LINE L1 3826 4695 -1451 275 172 16 0 chr4 106895409 106895473 -95432874 + L1PA14 LINE L1 6095 6159 -2 304 267 94 50 chr4 106895506 106895686 -95432661 + L1MC4a LINE L1 5927 6114 -1694 624 231 58 66 chr4 106895932 106896175 -95432172 - L2 LINE L2 0 3313 3073 1358 273 121 36 chr4 106896956 106897876 -95430471 - HAL1 LINE L1 -11 2496 1499 374 242 67 0 chr4 106897886 106898006 -95430341 - L1MD2 LINE L1 -11 6348 6221 337 258 68 80 chr4 106898009 106898172 -95430175 - HAL1 LINE L1 -1007 1500 1340 1231 208 16 49 chr4 106898354 106898662 -95429685 - AluJo SINE Alu -14 298 1 329 272 59 65 chr4 106898670 106898839 -95429508 - HAL1 LINE L1 -1470 1037 870 216 0 0 0 chr4 106898864 106898888 -95429459 + (T)n Simple_repeat Simple_repeat 1 24 0 27 0 0 0 chr4 106899386 106899413 -95428934 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr4 106899449 106899486 -95428861 + AT_rich Low_complexity Low_complexity 1 37 0 1645 159 33 74 chr4 106899513 106899904 -95428443 + THE1C LTR MaLR 1 375 0 340 325 102 23 chr4 106899936 106900201 -95428146 - L1M4 LINE L1 -1992 4154 3869 324 69 293 0 chr4 106900211 106900269 -95428078 + MADE1 DNA Mariner 2 76 -4 200 205 0 0 chr4 106901771 106901810 -95426537 + T-rich Low_complexity Low_complexity 2 40 0 288 0 0 0 chr4 106902609 106902641 -95425706 + (TG)n Simple_repeat Simple_repeat 1 32 0 491 306 35 22 chr4 106902829 106903058 -95425289 + ERVL LTR ERVL 2093 2324 -3440 443 283 106 13 chr4 106903102 106903309 -95425038 - MLT1H LTR MaLR -316 233 5 1238 322 90 15 chr4 106903410 106904372 -95423975 + ERVL LTR ERVL 2656 3745 -2019 251 330 0 9 chr4 106904423 106904529 -95423818 + (TA)n Simple_repeat Simple_repeat 2 106 0 308 294 0 33 chr4 106904529 106904621 -95423726 - L1MC4 LINE L1 -1339 6703 6615 232 260 42 42 chr4 106904634 106904730 -95423617 - L1MC4 LINE L1 -1333 6709 6614 1011 161 0 0 chr4 106904749 106904929 -95423418 + (TA)n Simple_repeat Simple_repeat 1 180 0 1097 297 66 21 chr4 106905196 106905620 -95422727 + ERVL LTR ERVL 4103 4545 -1219 518 306 76 25 chr4 106905655 106906043 -95422304 + ERVL LTR ERVL 4872 5325 -368 7711 99 14 3 chr4 106906109 106907139 -95421208 + THE1B-int LTR MaLR 540 1580 0 2267 107 51 25 chr4 106907139 106907494 -95420853 + THE1B LTR MaLR 1 364 0 3823 92 2 6 chr4 106907494 106908035 -95420312 + THE1B-int LTR MaLR 1 539 -1041 307 301 35 28 chr4 106908345 106908488 -95419859 + LTR33A LTR ERVL 13 156 -367 572 215 54 48 chr4 106908593 106908779 -95419568 + LTR33A LTR ERVL 335 521 -2 602 254 56 136 chr4 106909430 106910053 -95418294 - HAL1 LINE L1 -1932 575 3 1761 162 18 0 chr4 106910899 106911177 -95417170 + AluSx SINE Alu 14 296 -16 423 259 78 62 chr4 106911888 106912081 -95416266 - MLT1J LTR MaLR -313 198 3 4931 80 37 19 chr4 106912486 106913162 -95415185 + LTR12 LTR ERV1 1 688 0 198 0 0 0 chr4 106913342 106913364 -95414983 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 711 235 249 5 chr4 106913371 106913475 -95414872 - AluJb SINE Alu -31 281 204 216 0 0 0 chr4 106913475 106913499 -95414848 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 711 235 249 5 chr4 106913499 106913615 -95414732 - AluJb SINE Alu -108 204 7 1975 123 3 32 chr4 106913636 106913944 -95414403 - AluSx SINE Alu -13 299 1 412 219 83 53 chr4 106914231 106914400 -95413947 - L1ME3A LINE L1 0 6170 5997 236 170 0 0 chr4 106914442 106914489 -95413858 - L1ME3A LINE L1 -489 5855 5809 301 276 54 24 chr4 106914501 106914727 -95413620 - L1ME3A LINE L1 -689 5489 5259 329 341 16 43 chr4 106914730 106914985 -95413362 - L1ME3A LINE L1 -891 5255 5008 869 109 0 121 chr4 106915778 106915952 -95412395 - THE1-int LTR MaLR -1113 467 315 758 199 50 79 chr4 106915949 106916190 -95412157 - L1MA4 LINE L1 -163 6137 5904 * 4101 151 3 18 chr4 106916197 106917323 -95411024 - L1MA4 LINE L1 -525 5775 4659 1976 199 17 29 chr4 106917354 106917765 -95410582 + MLT2D LTR ERVL 7 412 -2 28 71 0 0 chr4 106917858 106917914 -95410433 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr4 106918020 106918042 -95410305 + AT_rich Low_complexity Low_complexity 1 22 0 485 86 0 0 chr4 106918157 106918227 -95410120 - L1PA7 LINE L1 -5 6149 6080 337 294 60 40 chr4 106918424 106918676 -95409671 + L1ME LINE L1 5521 5777 -344 22 0 0 0 chr4 106918933 106918955 -95409392 + AT_rich Low_complexity Low_complexity 1 22 0 310 284 12 42 chr4 106919317 106919467 -95408880 + GA-rich Low_complexity Low_complexity 3 253 0 201 176 0 0 chr4 106919814 106919848 -95408499 + (TA)n Simple_repeat Simple_repeat 2 35 0 1902 108 71 0 chr4 106919868 106920137 -95408210 - AluSg1 SINE Alu -21 288 1 3712 167 60 10 chr4 106920148 106920862 -95407485 - L1MC1 LINE L1 -20 6313 5564 * 9158 192 88 48 chr4 106920860 106922601 -95405746 - L1MCa LINE L1 -3193 3233 1310 180 0 0 0 chr4 106922601 106922621 -95405726 + (TTA)n Simple_repeat Simple_repeat 3 22 0 9158 192 88 48 chr4 106922621 106923986 -95404361 - L1MCa LINE L1 -5116 1310 1 2090 117 7 10 chr4 106924276 106924574 -95403773 - AluSq SINE Alu -4 309 13 1135 169 66 12 chr4 106924595 106924837 -95403510 - L1P LINE L1 -1330 4816 4562 828 280 14 0 chr4 106925602 106925816 -95402531 + MIR SINE MIR 18 234 -28 271 296 183 36 chr4 106926126 106926466 -95401881 - MLT1J LTR MaLR -22 489 43 278 365 0 0 chr4 106926893 106926978 -95401369 + MIR3 SINE MIR 113 197 -11 2179 118 7 0 chr4 106927908 106928204 -95400143 - AluSx SINE Alu -14 298 1 246 62 0 0 chr4 106930212 106930244 -95398103 + (GGAGAA)n Simple_repeat Simple_repeat 4 35 0 25 0 0 0 chr4 106930547 106930572 -95397775 + AT_rich Low_complexity Low_complexity 1 25 0 5795 76 16 3 chr4 106931533 106932549 -95395798 - L1PA7 LINE L1 -117 6037 5012 5062 135 14 5 chr4 106932905 106934288 -95394059 - L1PA14 LINE L1 -185 7414 6022 5971 131 27 11 chr4 106934289 106935228 -95393119 - L1PA14 LINE L1 -4861 2720 1767 22 0 0 0 chr4 106935729 106935751 -95392596 + AT_rich Low_complexity Low_complexity 1 22 0 257 334 61 25 chr4 106935760 106935883 -95392464 - MIR SINE MIR -66 142 25 853 268 21 24 chr4 106935975 106936253 -95392094 + MLT1H LTR MaLR 1 320 -229 226 316 0 0 chr4 106936426 106936505 -95391842 + MLT-int LTR MaLR 2 80 -1655 1407 236 48 8 chr4 106936662 106937013 -95391334 - MLT1A1 LTR MaLR 0 365 1 257 262 16 0 chr4 106937419 106937480 -95390867 - L2 LINE L2 -1059 2255 2194 282 303 215 25 chr4 106937480 106937764 -95390583 - L2 LINE L2 -2327 987 650 225 224 0 17 chr4 106938589 106938647 -95389700 + (TA)n Simple_repeat Simple_repeat 2 58 0 1832 137 69 141 chr4 106938735 106939289 -95389058 - MER67D LTR ERV1 0 514 1 248 337 34 43 chr4 106939348 106939511 -95388836 + MIR SINE MIR 37 196 -66 922 168 103 0 chr4 106939630 106939844 -95388503 + L1MA8 LINE L1 6052 6287 -4 2105 85 3 17 chr4 106939853 106940148 -95388199 + AluY SINE Alu 5 295 -16 2763 88 13 2 chr4 106940248 106940645 -95387702 + L1PA8 LINE L1 5771 6171 -1 302 116 0 0 chr4 106940666 106940709 -95387638 + LTR8 LTR ERV1 546 588 -103 225 0 0 0 chr4 106941102 106941127 -95387220 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 442 277 109 50 chr4 106941257 106941495 -95386852 - MIR SINE MIR -2 260 9 277 274 73 48 chr4 106943488 106943612 -95384735 + MIR SINE MIR 25 151 -111 319 274 75 9 chr4 106943767 106943873 -95384474 + L2 LINE L2 3197 3309 -4 1668 177 0 33 chr4 106944395 106944694 -95383653 + AluJb SINE Alu 3 291 -21 1184 313 55 22 chr4 106945144 106945887 -95382460 + L2 LINE L2 2541 3298 -15 26 0 0 0 chr4 106945887 106945913 -95382434 + AT_rich Low_complexity Low_complexity 1 26 0 1269 144 81 8 chr4 106945969 106946205 -95382142 + L1PA6 LINE L1 1 253 -6610 775 216 98 0 chr4 106946217 106946411 -95381936 - L1PBa LINE L1 -5778 1085 873 * 7094 158 37 32 chr4 106946409 106946931 -95381416 + L1PA6 LINE L1 1570 2087 -4775 1934 113 0 8 chr4 106946931 106947188 -95381159 + AluSx SINE Alu 1 255 -57 7094 158 37 32 chr4 106947188 106949531 -95378816 + L1PA6 LINE L1 2087 4455 -2407 6900 59 20 13 chr4 106949634 106951354 -95376993 + L1PA6 LINE L1 5140 6870 0 688 61 0 40 chr4 106951487 106951586 -95376761 + AluSx SINE Alu 1 95 -218 2496 44 10 3 chr4 106951586 106951884 -95376463 + AluY SINE Alu 1 300 -11 1569 110 9 0 chr4 106951883 106952110 -95376237 + AluSx SINE Alu 80 308 -2 * 1985 86 21 0 chr4 106952369 106952648 -95375699 - L1PA13 LINE L1 -12 6151 5867 763 99 9 0 chr4 106952654 106952765 -95375582 + L1PA13 LINE L1 5751 5862 -306 1031 67 0 0 chr4 106953083 106953217 -95375130 + L1MA1 LINE L1 6165 6298 -4 1917 105 23 4 chr4 106953649 106953915 -95374432 + AluSp SINE Alu 3 273 -40 186 232 101 29 chr4 106954021 106954090 -95374257 + MIR SINE MIR 138 211 -51 1405 157 127 26 chr4 106954766 106955034 -95373313 + AluSg SINE Alu 1 295 -5 1766 149 21 3 chr4 106955151 106955440 -95372907 - AluSx SINE Alu -18 294 1 4581 217 41 8 chr4 106955839 106956994 -95371353 + L1 LINE L1 3883 5075 -1071 4190 201 20 7 chr4 106957387 106958694 -95369653 - L1 LINE L1 -3424 3424 2096 4211 210 55 15 chr4 106958810 106959028 -95369319 + L1MA4A LINE L1 2850 3058 -3088 2094 106 28 0 chr4 106959028 106959312 -95369035 + AluSc SINE Alu 1 292 -17 4211 210 55 15 chr4 106959312 106960280 -95368067 + L1MA4A LINE L1 3058 4083 -2063 426 210 155 0 chr4 106960293 106960474 -95367873 + AluSc SINE Alu 1 209 -90 1083 172 86 16 chr4 106960781 106961025 -95367322 - THE1C LTR MaLR -112 263 3 27 29 0 0 chr4 106961175 106961209 -95367138 + AT_rich Low_complexity Low_complexity 1 34 0 202 318 0 15 chr4 106961211 106961277 -95367070 + MIR3 SINE MIR 138 202 -6 519 143 0 0 chr4 106962245 106962336 -95366011 + L1M1 LINE L1 4630 4720 -1426 1892 194 18 10 chr4 106962342 106963016 -95365331 + L1M1 LINE L1 4915 5596 -704 326 173 13 0 chr4 106963020 106963095 -95365252 + L1MA4A LINE L1 4298 4373 -1773 3982 145 20 1 chr4 106963095 106963775 -95364572 + L1MA4A LINE L1 5609 6303 0 1986 125 10 7 chr4 106964442 106964730 -95363617 - AluSp SINE Alu -24 289 1 387 250 0 50 chr4 106965024 106965124 -95363223 - L2 LINE L2 0 3313 3219 2251 203 9 14 chr4 106965145 106965394 -95362953 - MER89 LTR ERV1 -114 445 197 4015 97 9 0 chr4 106965394 106965943 -95362404 + MER41A LTR ERV1 1 554 0 2251 203 9 14 chr4 106965943 106966137 -95362210 - MER89 LTR ERV1 -362 197 4 5317 103 14 11 chr4 106966293 106967398 -95360949 - L1PB2 LINE L1 -1 6150 5035 343 115 0 16 chr4 106967504 106967565 -95360782 + AluSc SINE Alu 240 299 0 7051 52 18 0 chr4 106967599 106968738 -95359609 - L1PA6 LINE L1 -5 6149 5004 339 25 0 0 chr4 106968744 106968784 -95359563 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2046 100 3 31 chr4 106968790 106969079 -95359268 - AluY SINE Alu -30 281 1 5480 171 18 26 chr4 106969116 106970142 -95358205 - L1P LINE L1 -5119 1027 11 2286 173 45 50 chr4 106970112 106970736 -95357611 + L1 LINE L1 4050 4670 -1476 * 457 250 102 17 chr4 106971217 106971393 -95356954 + LTR33 LTR ERVL 331 521 0 234 180 100 20 chr4 106972355 106972405 -95355942 + MIR SINE MIR 85 138 -124 243 196 0 0 chr4 106972426 106972472 -95355875 + L2 LINE L2 3252 3297 -16 279 304 51 57 chr4 106973431 106973589 -95354758 - MIR SINE MIR -71 191 35 2302 63 0 56 chr4 106973673 106973992 -95354355 - AluY SINE Alu -10 301 1 315 295 48 19 chr4 106975222 106975327 -95353020 + L1ME1 LINE L1 5942 6049 -117 465 70 82 13 chr4 106975368 106975526 -95352821 + (TA)n Simple_repeat Simple_repeat 2 170 0 2263 105 3 0 chr4 106975693 106975997 -95352350 - AluSx SINE Alu -7 305 1 261 98 0 24 chr4 106975998 106976039 -95352308 + MSTA LTR MaLR 389 428 0 6476 140 52 13 chr4 106976054 106977217 -95351130 - Tigger3b DNA MER2_type -23 1208 1 502 212 78 134 chr4 106977291 106977477 -95350870 + MIR SINE MIR 57 231 -31 1827 116 105 14 chr4 106977477 106977762 -95350585 - AluSx SINE Alu 0 312 2 502 212 78 134 chr4 106977762 106977792 -95350555 + MIR SINE MIR 231 261 -1 264 295 156 8 chr4 106977846 106977968 -95350379 - MIR3 SINE MIR -57 151 12 565 325 4 44 chr4 106977991 106978240 -95350107 - MIR SINE MIR -20 242 4 2189 189 116 0 chr4 106979297 106979762 -95348585 + MLT2B1 LTR ERVL 1 519 -1 219 392 91 7 chr4 106981032 106981175 -95347172 + MIR3 SINE MIR 33 187 -21 821 226 6 6 chr4 106981303 106981471 -95346876 + MER63A DNA MER1_type 39 206 -4 422 285 95 40 chr4 106982012 106982265 -95346082 - LTR16C LTR ERVL -10 481 215 25 31 0 0 chr4 106982298 106982330 -95346017 + AT_rich Low_complexity Low_complexity 1 32 0 11333 113 37 21 chr4 106982807 106984929 -95343418 - LOR1-int LTR ERV1 -5367 2753 767 924 111 8 0 chr4 106984931 106985057 -95343290 + AluY SINE Alu 1 127 -184 514 95 274 0 chr4 106985066 106985161 -95343186 - LOR1-int LTR ERV1 -7557 563 443 1900 152 47 41 chr4 106985177 106985539 -95342808 - THE1B LTR MaLR 0 364 1 10646 122 17 1 chr4 106985539 106987095 -95341252 - THE1B-int LTR MaLR 0 1580 1 2054 126 56 36 chr4 106987095 106987452 -95340895 - THE1B LTR MaLR 0 364 1 504 131 0 4 chr4 106987484 106987643 -95340704 - AluSg/x SINE Alu -19 290 73 419 167 146 0 chr4 106987643 106987739 -95340608 - LOR1a LTR ERV1 -387 110 1 22 0 0 0 chr4 106988236 106988258 -95340089 + AT_rich Low_complexity Low_complexity 1 22 0 2305 83 3 3 chr4 106988342 106988643 -95339704 - AluY SINE Alu -10 301 1 273 167 21 0 chr4 106988783 106988831 -95339516 + L2 LINE L2 3265 3313 0 198 0 0 0 chr4 106989132 106989154 -95339193 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 3290 240 15 29 chr4 106990048 106990919 -95337428 - L1M2 LINE L1 -4861 1988 1130 214 342 20 34 chr4 106991403 106991552 -95336795 + MIR SINE MIR 78 224 -38 260 220 85 93 chr4 106991731 106991849 -95336498 - MER94 DNA DNA -16 118 2 1560 245 132 24 chr4 106992177 106992917 -95335430 + Charlie2a DNA MER1_type 1472 2291 -571 2041 90 70 30 chr4 106992917 106993216 -95335131 - AluY SINE Alu 0 311 1 322 172 0 103 chr4 106993476 106993507 -95334840 - L1MA9 LINE L1 -38 6274 6241 1381 213 17 17 chr4 106993507 106993807 -95334540 - AluJo SINE Alu -12 300 1 322 172 0 103 chr4 106993807 106993891 -95334456 - L1MA9 LINE L1 -71 6241 6171 240 349 13 74 chr4 106994423 106994572 -95333775 + L2 LINE L2 2945 3084 -188 514 272 143 21 chr4 106995071 106995630 -95332717 + L1M4 LINE L1 2898 3524 -2622 2307 80 7 0 chr4 106995923 106996210 -95332137 + AluY SINE Alu 1 289 -22 1410 207 154 50 chr4 106996300 106996580 -95331767 - L1ME2 LINE L1 -164 6000 5751 198 0 0 0 chr4 106996580 106996602 -95331745 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1410 207 154 50 chr4 106996602 106996886 -95331461 - L1ME2 LINE L1 -413 5751 5377 22 70 0 0 chr4 106997640 106997683 -95330664 + AT_rich Low_complexity Low_complexity 1 43 0 25 65 0 0 chr4 106997814 106997860 -95330487 + AT_rich Low_complexity Low_complexity 1 46 0 787 243 147 28 chr4 107098966 107099353 -95228994 + MER113 DNA MER1_type? 1 433 -88 523 300 65 1 chr4 107099452 107099626 -95228721 - MIR SINE MIR -33 229 49 2185 81 13 20 chr4 107099626 107099924 -95228423 + AluSx SINE Alu 1 296 -16 26 0 0 0 chr4 107099931 107099957 -95228390 + AT_rich Low_complexity Low_complexity 1 26 0 186 262 0 0 chr4 107099957 107099999 -95228348 - MIR SINE MIR -210 52 11 5916 99 31 0 chr4 107100380 107101318 -95227029 + L1PB2 LINE L1 5184 6147 -4 22 0 0 0 chr4 107101318 107101340 -95227007 + AT_rich Low_complexity Low_complexity 1 22 0 1754 224 33 51 chr4 107101675 107102189 -95226158 + MLT1D LTR MaLR 1 505 0 11565 46 13 0 chr4 107102737 107105353 -95222994 + L1PA5 LINE L1 3516 6153 -1 387 335 36 48 chr4 107106113 107106361 -95221986 + MIR SINE MIR 18 262 0 2008 237 155 20 chr4 107106857 107107745 -95220602 - L1ME2 LINE L1 -9 6155 5158 195 100 0 0 chr4 107110028 107110058 -95218289 + (CA)n Simple_repeat Simple_repeat 2 31 0 2319 109 0 0 chr4 107110989 107111300 -95217047 + AluSx SINE Alu 1 311 -1 673 241 72 0 chr4 107111400 107111566 -95216781 + MER45A DNA AcHobo 1 178 0 290 260 10 60 chr4 107112329 107112429 -95215918 + MER5B DNA MER1_type 82 176 -2 870 214 33 38 chr4 107113341 107113551 -95214796 - MER20 DNA MER1_type -9 210 2 19448 61 2 0 chr4 107114208 107116750 -95211597 - L1P LINE L1 -2707 3439 895 2278 111 0 0 chr4 107116743 107117059 -95211288 - L1P LINE L1 -5826 320 5 * 1672 107 0 0 chr4 107117816 107118041 -95210306 - AluY SINE Alu -6 305 81 1669 152 98 20 chr4 107119118 107119466 -95208881 + THE1C LTR MaLR 1 375 0 245 349 74 0 chr4 107119661 107119810 -95208537 - L2 LINE L2 -731 2583 2424 244 371 0 17 chr4 107120073 107120189 -95208158 + L2 LINE L2 2917 3030 -242 22 35 0 0 chr4 107120432 107120461 -95207886 + AT_rich Low_complexity Low_complexity 1 29 0 1043 129 90 0 chr4 107121390 107121568 -95206779 + ERVL-B3 LTR ERVL 5564 5757 -7 2142 168 54 126 chr4 107121568 107122165 -95206182 + MLT2B3 LTR ERVL 1 554 0 391 86 14 14 chr4 107122223 107122293 -95206054 + (TA)n Simple_repeat Simple_repeat 1 70 0 246 62 0 0 chr4 107122293 107122325 -95206022 + (CA)n Simple_repeat Simple_repeat 1 32 0 2149 179 45 33 chr4 107122996 107123487 -95204860 + L1MB7 LINE L1 5679 6175 -9 1366 312 43 75 chr4 107123507 107124714 -95203633 + L1PA12 LINE L1 6 1174 -6407 689 147 19 8 chr4 107124908 107125058 -95203289 + L1M4 LINE L1 5668 5821 -353 * 4978 213 19 25 chr4 107125041 107125240 -95203107 + L1PA12 LINE L1 2466 2665 -4919 1818 160 73 18 chr4 107125240 107125583 -95202764 - THE1B LTR MaLR -2 362 1 4978 213 19 25 chr4 107125583 107126639 -95201708 + L1PA12 LINE L1 2665 3713 -3871 23 68 0 0 chr4 107127065 107127109 -95201238 + AT_rich Low_complexity Low_complexity 1 44 0 296 186 76 0 chr4 107127499 107127617 -95200730 + (TA)n Simple_repeat Simple_repeat 2 128 0 1383 152 57 0 chr4 107128250 107128494 -95199853 - Tigger2 DNA MER2_type -10 2708 2451 4245 146 31 16 chr4 107128562 107129147 -95199200 - Tigger2 DNA MER2_type -1973 745 145 2790 7 0 3 chr4 107129147 107129453 -95198894 - AluYa5 SINE Alu -6 305 1 4245 146 31 16 chr4 107129453 107129601 -95198746 - Tigger2 DNA MER2_type -2573 145 1 227 303 30 20 chr4 107130066 107130165 -95198182 + MER103 DNA DNA 3 102 -64 204 293 16 81 chr4 107130392 107130515 -95197832 - MIR SINE MIR -85 177 63 1484 102 43 17 chr4 107130995 107131230 -95197117 + LTR1 LTR ERV1 1 241 -544 330 312 78 0 chr4 107131421 107131562 -95196785 + L1ME LINE L1 5299 5450 -2592 1231 203 45 7 chr4 107131781 107132072 -95196275 - MER33 DNA MER1_type -22 302 1 1820 137 0 0 chr4 107132144 107132400 -95195947 + AluSq SINE Alu 34 289 -24 184 365 115 39 chr4 107132472 107132680 -95195667 - L2 LINE L2 -2111 1203 980 230 303 11 11 chr4 107132759 107132848 -95195499 + GA-rich Low_complexity Low_complexity 2 90 0 3896 53 2 52 chr4 107132875 107133270 -95195077 - L1PA5 LINE L1 -2 6152 5739 186 43 0 0 chr4 107133270 107133293 -95195054 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2357 74 0 0 chr4 107133293 107133576 -95194771 - AluY SINE Alu -28 283 1 3896 53 2 52 chr4 107133576 107133721 -95194626 - L1PA5 LINE L1 -413 5741 5638 5750 43 0 2 chr4 107133721 107134677 -95193670 + L1PA5 LINE L1 4668 5622 -532 1087 333 127 24 chr4 107134919 107135795 -95192552 + L2 LINE L2 1804 2769 -545 21 36 0 0 chr4 107136516 107136544 -95191803 + AT_rich Low_complexity Low_complexity 1 28 0 2944 210 24 26 chr4 107136544 107137187 -95191160 - L1MC2 LINE L1 -59 6285 5642 1944 122 4 0 chr4 107137187 107137466 -95190881 + AluSx SINE Alu 33 312 0 2944 210 24 26 chr4 107137466 107137526 -95190821 - L1MC2 LINE L1 -702 5642 5583 348 291 80 48 chr4 107137524 107137837 -95190510 - L1MEc LINE L1 -4783 1613 1291 * 243 0 0 0 chr4 107138137 107138164 -95190183 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2325 80 7 0 chr4 107139640 107139926 -95188421 + AluSp SINE Alu 1 288 -25 212 0 36 0 chr4 107139933 107139961 -95188386 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 246 306 81 75 chr4 107140227 107140413 -95187934 - MIR SINE MIR -48 214 28 310 270 14 0 chr4 107140684 107140758 -95187589 - L2 LINE L2 0 3313 3239 228 260 126 24 chr4 107141352 107141479 -95186868 + L1ME LINE L1 5560 5699 -422 779 261 62 18 chr4 107142061 107142333 -95186014 - MLT1J1 LTR MaLR -160 286 3 483 242 90 36 chr4 107142688 107142875 -95185472 - MLT1J2 LTR MaLR -184 225 37 21 0 0 0 chr4 107142962 107142983 -95185364 + AT_rich Low_complexity Low_complexity 1 21 0 328 254 107 8 chr4 107143274 107143396 -95184951 - L1MEc LINE L1 -5974 231 98 1765 135 80 39 chr4 107143449 107143742 -95184605 - L1MA8 LINE L1 -10 6281 5967 2412 65 0 13 chr4 107143742 107144050 -95184297 - AluY SINE Alu -7 304 1 1765 135 80 39 chr4 107144050 107144142 -95184205 - L1MA8 LINE L1 -324 5967 5880 940 148 0 0 chr4 107144142 107144291 -95184056 + L1MA7 LINE L1 5719 5867 -424 1984 81 42 0 chr4 107144359 107144619 -95183728 - AluSq SINE Alu -12 301 31 1818 158 21 3 chr4 107144861 107145189 -95183158 - L1MA8 LINE L1 -483 5817 5484 362 44 0 0 chr4 107145207 107145252 -95183095 + MADE1 DNA Mariner 34 78 -2 495 115 0 11 chr4 107145252 107145339 -95183008 - L1MA8 LINE L1 -811 5489 5404 2643 163 24 0 chr4 107145339 107145802 -95182545 + L1MA6 LINE L1 5819 6294 -6 998 244 9 0 chr4 107146859 107147076 -95181271 - MER20 DNA MER1_type 0 219 1 621 275 36 26 chr4 107147180 107147373 -95180974 + MIR SINE MIR 40 234 -28 2435 54 0 3 chr4 107147641 107147938 -95180409 + AluY SINE Alu 1 296 -15 291 28 0 0 chr4 107147938 107147974 -95180373 + (TA)n Simple_repeat Simple_repeat 2 37 0 250 241 19 0 chr4 107148169 107148223 -95180124 + MIR3 SINE MIR 128 182 -26 25 0 0 0 chr4 107148890 107148915 -95179432 + AT_rich Low_complexity Low_complexity 1 25 0 602 111 0 0 chr4 107148919 107149000 -95179347 - U6 snRNA snRNA 0 107 27 29 28 0 0 chr4 107151301 107151337 -95177010 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 107151603 107151625 -95176722 + AT_rich Low_complexity Low_complexity 1 22 0 231 61 0 0 chr4 107151712 107151745 -95176602 + (TG)n Simple_repeat Simple_repeat 1 33 0 2811 188 12 50 chr4 107152530 107153062 -95175285 + MLT2B3 LTR ERVL 1 511 -43 694 41 20 0 chr4 107153062 107153160 -95175187 + (TCTA)n Simple_repeat Simple_repeat 2 101 0 2811 188 12 50 chr4 107153160 107153203 -95175144 + MLT2B3 LTR ERVL 511 554 0 25156 172 39 7 chr4 107153204 107158465 -95169882 + ERVL LTR ERVL 2 5449 -315 2489 68 64 160 chr4 107158465 107158966 -95169381 - MLT2A2 LTR ERVL 0 453 1 25156 172 39 7 chr4 107158966 107159045 -95169302 + ERVL LTR ERVL 5449 5524 -240 1775 172 56 0 chr4 107159050 107159353 -95168994 - MER7A DNA MER2_type -1 345 28 24 53 0 0 chr4 107159561 107159599 -95168748 + AT_rich Low_complexity Low_complexity 1 38 0 848 91 43 27 chr4 107159599 107160074 -95168273 + (TA)n Simple_repeat Simple_repeat 1 482 0 24 0 0 0 chr4 107160074 107160098 -95168249 + AT_rich Low_complexity Low_complexity 1 24 0 28 0 0 0 chr4 107160252 107160280 -95168067 + AT_rich Low_complexity Low_complexity 1 28 0 570 232 163 28 chr4 107160687 107160976 -95167371 - HAL1b LINE L1 -697 651 324 1959 134 3 23 chr4 107161072 107161378 -95166969 - AluSx SINE Alu -12 300 1 34 24 0 0 chr4 107161417 107161458 -95166889 + AT_rich Low_complexity Low_complexity 1 41 0 7332 37 1 0 chr4 107161458 107162907 -95165440 - L1PA5 LINE L1 -8 6146 4698 1664 131 6 105 chr4 107163078 107163421 -95164926 - AluJo SINE Alu -3 309 1 213 245 19 0 chr4 107163944 107163997 -95164350 - L2 LINE L2 -780 2534 2481 231 36 0 0 chr4 107166051 107166079 -95162268 + (TG)n Simple_repeat Simple_repeat 1 28 0 518 317 64 59 chr4 107167099 107167984 -95160363 + MER70-int LTR ERVL 885 3013 -2641 638 330 45 43 chr4 107167991 107168543 -95159804 + MER70-int LTR ERVL 2045 2597 -2426 315 0 0 0 chr4 107169742 107169777 -95158570 + (TG)n Simple_repeat Simple_repeat 1 35 0 2464 75 0 3 chr4 107170951 107171259 -95157088 - AluY SINE Alu -4 307 1 3935 153 53 9 chr4 107171446 107172145 -95156202 - L1PBa LINE L1 -6080 783 54 2136 330 57 38 chr4 107172494 107173766 -95154581 - HERV16 LTR ERVL -3700 1296 1 917 335 56 8 chr4 107173766 107174139 -95154208 - LTR16A LTR ERVL 0 450 60 1311 190 36 1 chr4 107174535 107174833 -95153514 - L1PA16 LINE L1 0 6161 5823 207 98 0 98 chr4 107175133 107175184 -95153163 + (TTTTTA)n Simple_repeat Simple_repeat 1 46 0 1965 173 0 3 chr4 107177578 107177890 -95150457 + AluSx SINE Alu 1 311 -1 6327 175 64 23 chr4 107179847 107180194 -95148153 + L1M1 LINE L1 12 343 -7222 1825 125 78 42 chr4 107180194 107180554 -95147793 - THE1C LTR MaLR 0 375 3 6327 175 64 23 chr4 107180554 107182508 -95145839 + L1M1 LINE L1 343 2214 -5351 1891 122 0 0 chr4 107182508 107182771 -95145576 + AluSx SINE Alu 37 299 -13 6327 175 64 23 chr4 107182771 107184267 -95144080 + L1M1 LINE L1 2214 4853 -2712 291 296 63 7 chr4 107186542 107186684 -95141663 - L2 LINE L2 -4 3309 3160 814 156 0 0 chr4 107186690 107186812 -95141535 + FLAM_C SINE Alu 1 122 -21 270 221 0 15 chr4 107187604 107187672 -95140675 + MER103 DNA DNA 53 119 -47 1203 244 88 3 chr4 107187930 107188250 -95140097 + MER90 LTR ERV1 1 347 -267 485 269 0 0 chr4 107188256 107188360 -95139987 - MER81 DNA DNA -4 110 7 1087 241 20 4 chr4 107188391 107188644 -95139703 + MER90 LTR ERV1 358 614 0 201 147 0 0 chr4 107188973 107189007 -95139340 + (TC)n Simple_repeat Simple_repeat 1 34 0 367 257 93 68 chr4 107189216 107189550 -95138797 + L1ME4a LINE L1 5644 5991 -130 312 91 0 0 chr4 107189550 107189594 -95138753 + (TA)n Simple_repeat Simple_repeat 1 44 0 367 257 93 68 chr4 107189594 107189644 -95138703 + L1ME4a LINE L1 5991 6038 -83 23 0 0 0 chr4 107189653 107189676 -95138671 + AT_rich Low_complexity Low_complexity 1 23 0 336 254 0 0 chr4 107190599 107190666 -95137681 + L2 LINE L2 3236 3302 -11 4862 134 10 1 chr4 107190757 107191482 -95136865 - Tigger1 DNA MER2_type -1668 750 20 2057 119 0 33 chr4 107191482 107191828 -95136519 + AluSx SINE Alu 1 336 0 258 313 19 12 chr4 107192369 107192529 -95135818 + (TA)n Simple_repeat Simple_repeat 2 162 0 231 114 0 0 chr4 107192530 107192565 -95135782 + (TG)n Simple_repeat Simple_repeat 2 36 0 1281 276 53 13 chr4 107193682 107194207 -95134140 + L1PBa LINE L1 6 551 -6312 2340 140 44 7 chr4 107194220 107194288 -95134059 + L1PB1 LINE L1 5722 5786 -365 231 36 0 0 chr4 107194288 107194316 -95134031 + (TG)n Simple_repeat Simple_repeat 1 28 0 2340 140 44 7 chr4 107194316 107194660 -95133687 + L1PB1 LINE L1 5786 6149 -2 454 273 31 0 chr4 107194730 107194809 -95133538 - MIR SINE MIR 0 262 176 339 25 0 0 chr4 107194809 107194849 -95133498 + (CA)n Simple_repeat Simple_repeat 2 41 0 454 273 31 0 chr4 107194849 107194897 -95133450 - MIR SINE MIR -86 176 131 294 355 139 17 chr4 107194897 107195069 -95133278 - L2 LINE L2 -5 3267 3075 345 284 43 28 chr4 107195079 107195205 -95133142 - MIR SINE MIR -119 143 13 1395 138 65 126 chr4 107195205 107195603 -95132744 + THE1C LTR MaLR 2 375 0 345 284 43 28 chr4 107195603 107195617 -95132730 - MIR SINE MIR -249 13 1 1762 34 0 0 chr4 107195720 107195928 -95132419 - L1PA4 LINE L1 -261 5894 5687 2056 51 0 0 chr4 107195928 107196181 -95132166 + L1PA4 LINE L1 5900 6153 -2 638 124 0 0 chr4 107196798 107196895 -95131452 - L1MA2 LINE L1 0 6304 6208 318 288 124 77 chr4 107197249 107197482 -95130865 - MIR SINE MIR -16 246 3 184 107 0 0 chr4 107197964 107197992 -95130355 + L2 LINE L2 3266 3293 -20 2090 117 0 23 chr4 107198105 107198412 -95129935 - AluSg SINE Alu -10 300 1 264 311 90 11 chr4 107199520 107199697 -95128650 + MIR SINE MIR 70 260 -2 2180 12 0 0 chr4 107200158 107200425 -95127922 + L1PA3 LINE L1 5893 6159 0 539 231 28 21 chr4 107200738 107200881 -95127466 + L1ME4a LINE L1 5975 6118 -3 1482 173 16 4 chr4 107200917 107201166 -95127181 + AluSg SINE Alu 1 252 -58 3120 116 60 6 chr4 107201188 107201673 -95126674 - MER9 LTR ERVK 0 511 1 28 29 0 0 chr4 107201673 107201708 -95126639 + AT_rich Low_complexity Low_complexity 1 35 0 22 25 0 25 chr4 107201757 107201774 -95126573 + AT_rich Low_complexity Low_complexity 1 17 -22 2877 6 0 0 chr4 107201774 107202085 -95126262 + AluYa5 SINE Alu 1 311 0 22 25 0 25 chr4 107202085 107202107 -95126240 + AT_rich Low_complexity Low_complexity 17 39 0 1938 149 10 7 chr4 107203765 107204066 -95124281 + AluSx SINE Alu 1 302 -10 411 67 53 13 chr4 107204068 107204143 -95124204 + GA-rich Low_complexity Low_complexity 3 80 0 28 86 0 0 chr4 107204340 107204410 -95123937 + AT_rich Low_complexity Low_complexity 1 70 0 594 211 0 100 chr4 107205183 107205363 -95122984 - L1MC4 LINE L1 -427 7615 7454 2240 110 3 0 chr4 107205514 107205824 -95122523 - AluSx SINE Alu 0 312 2 2257 107 3 0 chr4 107208744 107209044 -95119303 + AluSp SINE Alu 1 301 -12 375 228 0 0 chr4 107209098 107209190 -95119157 + GA-rich Low_complexity Low_complexity 1 92 0 346 267 87 76 chr4 107209485 107209829 -95118518 + HAL1b LINE L1 32 379 -969 723 249 86 0 chr4 107210046 107210255 -95118092 + MLT1F LTR MaLR 316 542 0 1991 147 0 0 chr4 107210264 107210556 -95117791 + AluSx SINE Alu 17 308 -4 306 251 65 101 chr4 107212662 107212859 -95115488 + HAL1b LINE L1 125 307 -1041 2345 97 0 0 chr4 107212859 107213159 -95115188 + AluY SINE Alu 2 301 -10 306 251 65 101 chr4 107213159 107213299 -95115048 + HAL1b LINE L1 307 450 -898 972 257 112 3 chr4 107213334 107213672 -95114675 + L1ME3 LINE L1 5781 6155 -7 243 298 108 29 chr4 107213853 107214168 -95114179 + HAL1 LINE L1 2024 2363 -144 535 265 97 12 chr4 107214314 107214635 -95113712 + HAL1b LINE L1 623 970 -378 22 88 0 0 chr4 107214672 107214729 -95113618 + AT_rich Low_complexity Low_complexity 1 57 0 237 284 18 9 chr4 107214809 107214918 -95113429 + HAL1b LINE L1 1238 1347 -1 23 33 0 0 chr4 107216281 107216311 -95112036 + AT_rich Low_complexity Low_complexity 1 30 0 390 344 12 57 chr4 107216694 107216941 -95111406 - MIR SINE MIR -1 261 26 21 36 0 0 chr4 107217443 107217471 -95110876 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 107217531 107217552 -95110795 + AT_rich Low_complexity Low_complexity 1 21 0 296 272 76 0 chr4 107217925 107218017 -95110330 + MIR3 SINE MIR 77 175 -33 207 0 0 0 chr4 107218073 107218096 -95110251 + (CA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr4 107218608 107218629 -95109718 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 107218896 107218924 -95109423 + AT_rich Low_complexity Low_complexity 1 28 0 338 310 124 61 chr4 107219464 107219874 -95108473 + L1M2 LINE L1 900 1335 -5514 243 257 14 0 chr4 107220104 107220174 -95108173 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 205 351 36 18 chr4 107221180 107221291 -95107056 + MIR SINE MIR 23 135 -73 21 0 0 0 chr4 107221506 107221527 -95106820 + AT_rich Low_complexity Low_complexity 1 21 0 368 262 284 6 chr4 107221672 107221855 -95106492 - MIR SINE MIR -14 248 15 180 111 0 0 chr4 107222097 107222124 -95106223 + (CA)n Simple_repeat Simple_repeat 1 27 0 25 31 0 0 chr4 107222165 107222197 -95106150 + AT_rich Low_complexity Low_complexity 1 32 0 2136 178 95 5 chr4 107223039 107223483 -95104864 + MLT1D LTR MaLR 21 504 -1 2628 51 0 0 chr4 107223915 107224226 -95104121 - AluY SINE Alu 0 311 1 256 274 202 0 chr4 107224486 107224570 -95103777 - L2 LINE L2 0 3272 3172 21 0 0 0 chr4 107225382 107225403 -95102944 + AT_rich Low_complexity Low_complexity 1 21 0 616 337 49 38 chr4 107226157 107226504 -95101843 + LTR16C LTR ERVL 100 450 -41 277 313 62 7 chr4 107226838 107226982 -95101365 + MIR SINE MIR 109 260 -2 22 56 0 0 chr4 107227148 107227184 -95101163 + AT_rich Low_complexity Low_complexity 1 36 0 482 180 0 0 chr4 107227310 107227410 -95100937 + L1P LINE L1 5108 5207 -939 * 792 73 9 0 chr4 107227407 107227517 -95100830 + L1P4 LINE L1 5672 5782 -379 2242 101 0 0 chr4 107227517 107227814 -95100533 + AluY SINE Alu 1 297 -14 231 283 101 25 chr4 107227816 107227975 -95100372 - MER104 DNA Tc2 -9 171 1 1645 141 42 56 chr4 107228053 107228359 -95099988 - AluSx SINE Alu -10 302 1 242 345 138 16 chr4 107228501 107228747 -95099600 + LTR33 LTR ERVL 139 414 -107 207 69 0 0 chr4 107228754 107228783 -95099564 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 5977 91 28 6 chr4 107228795 107229962 -95098385 + L1PA14 LINE L1 4968 6158 -3 398 351 59 34 chr4 107229978 107230419 -95097928 + ERVL LTR ERVL 820 1271 -4493 457 305 11 11 chr4 107230439 107230613 -95097734 - MER58C DNA MER1_type -40 175 2 1299 316 79 62 chr4 107231025 107231559 -95096788 + ERVL LTR ERVL 1783 2306 -3458 1654 174 48 33 chr4 107231559 107231893 -95096454 - MER44D DNA MER2_type 0 609 1 1299 316 79 62 chr4 107231893 107232442 -95095905 + ERVL LTR ERVL 2306 2885 -2879 1214 86 81 21 chr4 107232480 107232666 -95095681 + MER30 DNA MER1_type 1 197 -33 3577 113 11 6 chr4 107232722 107233251 -95095096 - L1PA11 LINE L1 0 6174 5643 1007 358 66 15 chr4 107233274 107234039 -95094308 + ERVL LTR ERVL 2971 3816 -1838 243 182 52 13 chr4 107234546 107234623 -95093724 + L1ME1 LINE L1 6080 6159 -7 24 32 0 0 chr4 107236572 107236603 -95091744 + AT_rich Low_complexity Low_complexity 1 31 0 623 237 125 64 chr4 107236617 107237026 -95091321 - MLT1J LTR MaLR -3 508 13 255 259 49 25 chr4 107237729 107237810 -95090537 - L2 LINE L2 -4 3309 3227 1428 182 13 132 chr4 107237810 107238205 -95090142 + MER7A DNA MER2_type 1 346 0 661 337 65 57 chr4 107238330 107238704 -95089643 - L2 LINE L2 -250 3063 2685 2153 94 3 28 chr4 107238704 107239022 -95089325 + AluSq SINE Alu 1 310 -3 661 337 65 57 chr4 107239022 107239344 -95089003 - L2 LINE L2 -628 2685 2367 373 326 28 50 chr4 107239372 107239654 -95088693 - L2 LINE L2 -1123 2191 1916 22 0 0 0 chr4 107240633 107240655 -95087692 + AT_rich Low_complexity Low_complexity 1 22 0 308 305 0 0 chr4 107241157 107241239 -95087108 - MIR3 SINE MIR -4 204 123 385 209 9 52 chr4 107242937 107243052 -95085295 + MER112 DNA MER1_type 8 117 -143 262 238 75 25 chr4 107243083 107243163 -95085184 + L1MCc LINE L1 -313 4294967066 -6276 2086 189 94 23 chr4 107243173 107243783 -95084564 - MER39 LTR ERV1 -13 694 1 2654 237 83 132 chr4 107243783 107245248 -95083099 + L1MCc LINE L1 109 1678 -4886 * 4838 9 0 4 chr4 107245231 107245783 -95082564 + L1HS LINE L1 5606 6155 0 1619 217 111 38 chr4 107245790 107246355 -95081992 + L1MCc LINE L1 1657 2316 -4248 245 27 54 0 chr4 107246355 107246392 -95081955 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1619 217 111 38 chr4 107246392 107246718 -95081629 + L1MCc LINE L1 2316 2617 -3947 291 20 0 100 chr4 107246740 107246790 -95081557 - MADE1 DNA Mariner -2 78 34 591 305 13 4 chr4 107246884 107247120 -95081227 + L1MCc LINE L1 2713 2950 -3614 1049 162 35 0 chr4 107249505 107249703 -95078644 + AluSc SINE Alu 83 287 -22 294 196 47 27 chr4 107249704 107249852 -95078495 + (TA)n Simple_repeat Simple_repeat 1 151 0 660 177 41 27 chr4 107249899 107250046 -95078301 - MER33 DNA MER1_type -175 149 1 625 0 0 0 chr4 107250510 107250582 -95077765 - tRNA-Pro-CCG tRNA tRNA -3 72 1 415 127 14 0 chr4 107251603 107251674 -95076673 + tRNA-Pro-CCA tRNA tRNA 1 72 -3 706 134 18 0 chr4 107252169 107252281 -95076066 + AluSc SINE Alu 144 257 -52 4181 73 19 40 chr4 107252281 107253421 -95074926 - MER11A LTR ERVK -6 1260 1 1246 142 10 5 chr4 107253425 107253630 -95074717 + AluJb SINE Alu 85 290 -22 254 288 98 23 chr4 107254561 107254693 -95073654 + L2 LINE L2 2526 2667 -647 478 304 128 43 chr4 107254716 107255177 -95073170 + L2 LINE L2 2805 3304 -9 24 0 0 0 chr4 107256230 107256254 -95072093 + AT_rich Low_complexity Low_complexity 1 24 0 426 153 0 0 chr4 107256256 107256315 -95072032 + AluS SINE Alu 2 60 -258 7003 37 14 44 chr4 107256416 107257333 -95071014 + L1PA4 LINE L1 5265 6154 -1 389 254 170 12 chr4 107257362 107257448 -95070899 - MER58C DNA MER1_type -2229 191 120 266 87 22 0 chr4 107257448 107257494 -95070853 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 389 254 170 12 chr4 107257494 107257572 -95070775 - MER58C DNA MER1_type -2300 120 1 2045 112 17 7 chr4 107257656 107257943 -95070404 + AluSg SINE Alu 3 292 -18 1665 134 42 56 chr4 107258182 107258488 -95069859 - AluJb SINE Alu -10 302 1 2512 155 99 8 chr4 107258892 107260713 -95067634 - SATR1 Satellite Satellite -2 1986 1 285 257 5 43 chr4 107260717 107260904 -95067443 + (TAA)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chr4 107260939 107260960 -95067387 + AT_rich Low_complexity Low_complexity 1 21 0 690 213 32 0 chr4 107260986 107261141 -95067206 + SATR1 Satellite Satellite 192 351 -119 981 61 0 0 chr4 107261241 107261356 -95066991 + AluSg/x SINE Alu 183 297 -15 740 174 0 0 chr4 107263710 107263819 -95064528 + FLAM_C SINE Alu 5 113 -30 1460 205 40 20 chr4 107263931 107264233 -95064114 + MSTD LTR MaLR 89 396 0 790 224 6 19 chr4 107264233 107264393 -95063954 - Charlie1a DNA MER1_type -1297 158 1 504 327 44 22 chr4 107264458 107264776 -95063571 + L2 LINE L2 1671 1995 -1319 530 289 88 10 chr4 107264782 107264986 -95063361 - MIR SINE MIR -32 230 11 487 331 86 35 chr4 107265330 107265620 -95062727 + L2 LINE L2 2968 3272 0 362 301 51 13 chr4 107266099 107266255 -95062092 - MER5A DNA MER1_type 0 189 28 515 216 123 43 chr4 107266331 107266493 -95061854 + MLT1B LTR MaLR 1 175 -215 1171 241 9 0 chr4 107266684 107266916 -95061431 - Charlie1a DNA MER1_type -1204 251 18 283 270 88 7 chr4 107266961 107267098 -95061249 + L1ME4a LINE L1 5970 6117 -4 613 158 16 47 chr4 107267477 107267604 -95060743 + Charlie5 DNA MER1_type 1 123 -2489 1464 178 95 3 chr4 107267604 107267963 -95060384 + Charlie5 DNA MER1_type 2233 2624 0 259 280 20 50 chr4 107271524 107271624 -95056723 + MIR SINE MIR 57 153 -109 229 337 22 0 chr4 107271747 107271836 -95056511 - MIR SINE MIR -7 255 165 256 200 25 25 chr4 107272692 107272772 -95055575 + MER113 DNA MER1_type? 1 80 -441 217 216 0 0 chr4 107272775 107272812 -95055535 + (TG)n Simple_repeat Simple_repeat 2 38 0 262 175 0 0 chr4 107272940 107272980 -95055367 + MER113 DNA MER1_type? 454 493 -28 479 345 90 31 chr4 107273393 107273648 -95054699 + MER115 DNA AcHobo 164 433 -260 1458 167 117 11 chr4 107273868 107274150 -95054197 + AluJo SINE Alu 1 312 0 874 154 0 0 chr4 107274855 107274985 -95053362 - FLAM_C SINE Alu -2 131 2 984 253 62 22 chr4 107275216 107275489 -95052858 + MLT1H1 LTR MaLR 10 293 -262 1754 101 151 32 chr4 107275603 107276105 -95052242 + MER51A LTR ERV1 1 634 0 733 234 34 6 chr4 107276260 107276435 -95051912 + MLT1H1 LTR MaLR 411 590 0 2285 94 7 3 chr4 107276507 107276806 -95051541 + AluSx SINE Alu 3 302 -10 617 269 39 16 chr4 107279252 107279434 -95048913 + MIR SINE MIR 60 245 -17 2374 67 3 0 chr4 107279598 107279905 -95048442 - AluY SINE Alu 0 308 1 2146 203 92 9 chr4 107280272 107281992 -95046355 - SATR1 Satellite Satellite 0 1862 1 1931 169 9 11 chr4 107282052 107282402 -95045945 - L1 LINE L1 -1264 4882 4534 222 189 14 54 chr4 107282586 107282660 -95045687 + MIR SINE MIR 191 261 -1 730 262 38 15 chr4 107283224 107283487 -95044860 - L1PBa LINE L1 -6589 274 6 202 324 11 39 chr4 107284602 107284784 -95043563 + (TA)n Simple_repeat Simple_repeat 2 178 0 203 171 0 0 chr4 107285347 107285388 -95042959 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1443 158 26 74 chr4 107285391 107285701 -95042646 - AluSx SINE Alu -17 295 1 383 287 116 0 chr4 107285705 107285834 -95042513 - MLT1H1 LTR MaLR -353 202 59 408 139 14 14 chr4 107285934 107286006 -95042341 - L1P5 LINE L1 -415 5736 5665 2288 164 87 17 chr4 107286285 107286754 -95041593 - MLT1D LTR MaLR 0 505 4 186 43 0 0 chr4 107286865 107286888 -95041459 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 694 204 9 0 chr4 107286890 107287003 -95041344 - FLAM_A SINE Alu -19 114 1 408 267 85 18 chr4 107287621 107287786 -95040561 - MIR SINE MIR -66 196 21 2207 66 30 0 chr4 107288000 107288271 -95040076 - L1PA7 LINE L1 0 6154 5876 313 220 209 0 chr4 107288557 107288648 -95039699 + L2 LINE L2 3202 3311 -2 327 253 39 96 chr4 107289037 107289121 -95039226 - LTR33 LTR ERVL -2 519 432 2116 135 0 0 chr4 107289121 107289418 -95038929 + AluSx SINE Alu 2 298 -14 327 253 39 96 chr4 107289418 107289562 -95038785 - LTR33 LTR ERVL -89 432 304 245 348 77 70 chr4 107289579 107289838 -95038509 + L2 LINE L2 3012 3272 0 1560 211 10 3 chr4 107289984 107290287 -95038060 + AluJo SINE Alu 1 305 -7 204 303 226 7 chr4 107290585 107290740 -95037607 + MIR SINE MIR 71 259 -3 597 225 33 0 chr4 107290880 107291000 -95037347 + AluSg/x SINE Alu 136 259 -51 1050 48 79 0 chr4 107291011 107291137 -95037210 + MER85 DNA T2_type 1 136 -3 2439 109 17 3 chr4 107292209 107292567 -95035780 - L1MA3 LINE L1 -1 6304 5942 * 7327 62 26 0 chr4 107292562 107293621 -95034726 - L1PA7 LINE L1 0 6154 5086 5543 81 3 3 chr4 107293625 107294382 -95033965 + L1PA7 LINE L1 4327 5083 -1063 493 322 40 22 chr4 107294498 107294725 -95033622 + L2 LINE L2 2815 3045 -227 1555 176 7 0 chr4 107295104 107295377 -95032970 + L1MD1 LINE L1 5555 5829 -413 412 234 63 46 chr4 107295750 107295925 -95032422 - LTR33A LTR ERVL -336 187 10 2928 106 0 11 chr4 107296093 107296472 -95031875 - THE1C LTR MaLR 0 375 1 10682 111 33 45 chr4 107296472 107298071 -95030276 - THE1C-int LTR MaLR 0 1580 1 2169 116 55 33 chr4 107298072 107298435 -95029912 - THE1C LTR MaLR -1 374 4 293 324 14 7 chr4 107299382 107299511 -95028836 - L2 LINE L2 -306 2966 2839 433 251 126 37 chr4 107299987 107300178 -95028169 - MIR SINE MIR -40 222 15 592 328 77 47 chr4 107300502 107301169 -95027178 - L2 LINE L2 -597 2717 2031 1648 169 45 9 chr4 107301283 107301614 -95026733 + L1MB3 LINE L1 5793 6135 -48 2141 101 0 7 chr4 107301619 107301907 -95026440 + AluSc SINE Alu 5 290 -19 289 109 18 18 chr4 107301955 107302010 -95026337 + L1MB2 LINE L1 6115 6169 -2 317 238 12 12 chr4 107302157 107302237 -95026110 - MER116 DNA Mariner 0 80 1 272 378 33 20 chr4 107302791 107302942 -95025405 - MER5A DNA MER1_type -11 178 26 389 79 0 16 chr4 107303241 107303304 -95025043 + (GGA)n Simple_repeat Simple_repeat 1 62 0 215 328 103 0 chr4 107303937 107304053 -95024294 - L3b LINE CR1 -167 1416 1289 727 307 96 50 chr4 107305275 107305824 -95022523 - L2 LINE L2 0 3313 2733 1958 151 37 48 chr4 107305830 107306207 -95022140 - THE1C LTR MaLR 0 375 3 6484 164 65 28 chr4 107306209 107308161 -95020186 + L1M1 LINE L1 377 3353 -4212 1891 122 0 0 chr4 107308161 107308424 -95019923 + AluSx SINE Alu 37 299 -13 6484 164 65 28 chr4 107308424 107308515 -95019832 + L1M1 LINE L1 3353 3439 -4126 21 36 0 0 chr4 107309367 107309395 -95018952 + AT_rich Low_complexity Low_complexity 1 28 0 752 231 29 0 chr4 107312894 107313067 -95015280 - MER45A DNA AcHobo 0 178 1 797 198 37 6 chr4 107314441 107314603 -95013744 + MER5B DNA MER1_type 1 167 -11 26 0 0 0 chr4 107314770 107314796 -95013551 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr4 107314938 107314974 -95013373 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr4 107315279 107315311 -95013036 + AT_rich Low_complexity Low_complexity 1 32 0 203 243 0 0 chr4 107316496 107316533 -95011814 + polypurine Low_complexity Low_complexity 4 40 0 294 272 108 42 chr4 107316949 107317162 -95011185 - L2 LINE L2 0 3313 3087 * 930 324 173 23 chr4 107317158 107317853 -95010494 - L2 LINE L2 -555 2759 1961 2452 87 0 0 chr4 107318555 107318865 -95009482 - AluY SINE Alu -1 310 1 21 0 0 0 chr4 107319205 107319226 -95009121 + AT_rich Low_complexity Low_complexity 1 21 0 30758 71 16 12 chr4 107319526 107322835 -95005512 - HERVK9 LTR ERVK -1766 4150 753 219 217 0 87 chr4 107322835 107322904 -95005443 - MER5B DNA MER1_type -61 117 55 30758 71 16 12 chr4 107322904 107323660 -95004687 - HERVK9 LTR ERVK -5163 753 1 3444 102 7 56 chr4 107323660 107323992 -95004355 - MER9 LTR ERVK 0 511 213 13261 40 17 0 chr4 107323992 107326346 -95002001 + L1PA5 LINE L1 3772 6140 -14 3444 102 7 56 chr4 107326346 107326550 -95001797 - MER9 LTR ERVK -298 213 1 337 161 12 0 chr4 107326550 107326631 -95001716 + L1MA9 LINE L1 6231 6312 0 713 216 50 22 chr4 107326902 107327083 -95001264 - MER5A DNA MER1_type -3 186 1 2325 76 3 38 chr4 107327205 107327520 -95000827 + AluSp SINE Alu 1 304 -9 614 237 187 5 chr4 107327786 107327984 -95000363 - MIR SINE MIR -1 261 28 22 0 0 0 chr4 107328370 107328392 -94999955 + AT_rich Low_complexity Low_complexity 1 22 0 222 37 0 0 chr4 107328846 107328873 -94999474 + (CA)n Simple_repeat Simple_repeat 2 28 0 237 139 116 0 chr4 107329255 107329298 -94999049 - MLT2D LTR ERVL 0 414 367 181 141 0 31 chr4 107329403 107329467 -94998880 + (TAAA)n Simple_repeat Simple_repeat 1 62 0 3202 200 47 3 chr4 107331314 107331938 -94996409 + MER82 DNA MER2_type 1 651 -2 231 348 33 66 chr4 107331978 107332159 -94996188 - MIR SINE MIR -86 176 2 499 257 113 0 chr4 107332981 107333119 -94995228 - MIR SINE MIR -55 153 1 21 36 0 0 chr4 107334278 107334306 -94994041 + AT_rich Low_complexity Low_complexity 1 28 0 2326 76 0 0 chr4 107336560 107336862 -94991485 + L1PA5 LINE L1 5846 6147 -7 224 256 12 0 chr4 107337406 107337492 -94990855 + GA-rich Low_complexity Low_complexity 3 89 0 423 0 0 0 chr4 107338495 107338542 -94989805 + (TG)n Simple_repeat Simple_repeat 1 47 0 763 238 72 0 chr4 107341805 107341986 -94986361 + MER20 DNA MER1_type 7 200 -19 647 278 40 11 chr4 107341996 107342172 -94986175 + MER5A DNA MER1_type 1 181 -8 21 0 0 0 chr4 107342931 107342952 -94985395 + AT_rich Low_complexity Low_complexity 1 21 0 207 291 73 0 chr4 107343799 107343854 -94984493 - L2 LINE L2 0 3272 3214 1023 184 34 24 chr4 107344153 107344360 -94983987 - MER6B DNA MER2_type 0 210 2 261 57 0 0 chr4 107344383 107344418 -94983929 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 26 74 0 0 chr4 107344642 107344696 -94983651 + AT_rich Low_complexity Low_complexity 1 54 0 233 256 244 0 chr4 107345610 107345688 -94982659 - MER5A DNA MER1_type -83 106 10 29 28 0 0 chr4 107345850 107345886 -94982461 + AT_rich Low_complexity Low_complexity 1 36 0 968 98 148 44 chr4 107345951 107346056 -94982291 + MER30 DNA MER1_type 1 94 -136 324 0 0 0 chr4 107346056 107346092 -94982255 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 968 98 148 44 chr4 107346092 107346169 -94982178 + MER30 DNA MER1_type 94 202 -28 718 178 17 11 chr4 107346252 107346426 -94981921 - L1MA5 LINE L1 -2 6298 6124 1214 312 77 52 chr4 107348084 107348637 -94979710 - L2 LINE L2 0 3313 2715 1812 159 37 42 chr4 107348637 107349014 -94979333 - THE1C LTR MaLR 0 375 1 1214 312 77 52 chr4 107349014 107349452 -94978895 - L2 LINE L2 -598 2715 2290 631 280 11 6 chr4 107349452 107349634 -94978713 - L2 LINE L2 -1224 2090 1908 24 0 0 0 chr4 107350995 107351019 -94977328 + AT_rich Low_complexity Low_complexity 1 24 0 183 217 65 130 chr4 107351337 107351429 -94976918 - L2 LINE L2 -100 3213 3128 24 32 0 0 chr4 107351431 107351462 -94976885 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr4 107351591 107351625 -94976722 + AT_rich Low_complexity Low_complexity 1 34 0 241 337 174 0 chr4 107351724 107351816 -94976531 + L2 LINE L2 3139 3246 -26 226 265 0 0 chr4 107351839 107351888 -94976459 + (TG)n Simple_repeat Simple_repeat 2 50 0 248 277 198 0 chr4 107351943 107352044 -94976303 - L2 LINE L2 -21 3292 3172 616 203 55 0 chr4 107352255 107352383 -94975964 - MIR SINE MIR -111 151 17 1826 220 55 41 chr4 107352741 107353254 -94975093 + MLT2B1 LTR ERVL 1 520 0 230 366 142 0 chr4 107353625 107353759 -94974588 + MER20B DNA MER1_type 26 178 -605 194 275 101 64 chr4 107354065 107354174 -94974173 + L3 LINE CR1 1367 1479 -98 525 247 16 103 chr4 107356505 107356748 -94971599 + L2 LINE L2 3014 3235 -78 2131 171 36 11 chr4 107357333 107357772 -94970575 + L1MA3 LINE L1 4823 5272 -874 209 170 38 19 chr4 107357774 107357827 -94970520 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 540 221 25 6 chr4 107357827 107357990 -94970357 + (CATA)n Simple_repeat Simple_repeat 2 167 0 353 230 17 22 chr4 107357980 107358175 -94970172 + (TA)n Simple_repeat Simple_repeat 1 193 0 * 4342 108 24 5 chr4 107358175 107358842 -94969505 + L1MA3 LINE L1 5266 5945 -360 6981 58 3 4 chr4 107358823 107359838 -94968509 + L1PA7 LINE L1 5141 6154 0 2291 117 14 0 chr4 107359838 107360191 -94968156 + L1MA3 LINE L1 5942 6304 -1 398 292 32 49 chr4 107361003 107361277 -94967070 - MLT1I LTR MaLR -95 351 66 3842 172 104 109 chr4 107361869 107362489 -94965858 - L1MC3 LINE L1 0 7785 7083 287 233 33 22 chr4 107362489 107362579 -94965768 - MLT1I LTR MaLR -456 111 21 3842 172 104 109 chr4 107362579 107363024 -94965323 - L1MC3 LINE L1 -702 7083 6637 241 333 0 12 chr4 107363272 107363356 -94964991 + (CATATA)n Simple_repeat Simple_repeat 3 85 0 230 326 12 23 chr4 107364407 107364493 -94963854 - L2 LINE L2 -5 3308 3224 377 370 126 23 chr4 107364591 107365259 -94963088 - L2 LINE L2 -245 3027 2289 301 325 156 28 chr4 107365386 107365598 -94962749 + MIR SINE MIR 10 248 -14 237 33 0 0 chr4 107365598 107365628 -94962719 + (TG)n Simple_repeat Simple_repeat 1 30 0 324 64 0 0 chr4 107365628 107365675 -94962672 + (GA)n Simple_repeat Simple_repeat 2 48 0 272 300 67 17 chr4 107366944 107367064 -94961283 - MIR SINE MIR -10 252 127 410 323 23 15 chr4 107367223 107367353 -94960994 + L2 LINE L2 3183 3313 0 229 333 103 83 chr4 107368352 107368556 -94959791 + L3 LINE CR1 196 403 -1174 202 56 56 0 chr4 107368872 107368908 -94959439 + (TA)n Simple_repeat Simple_repeat 2 39 0 275 244 35 12 chr4 107370303 107370389 -94957958 - MLT1H LTR MaLR -6 549 462 972 198 43 22 chr4 107370395 107370627 -94957720 - MER96B DNA MER1_type? -180 237 1 279 246 186 68 chr4 107370634 107370752 -94957595 - MLT1H LTR MaLR -135 414 283 493 286 48 0 chr4 107371019 107371166 -94957181 + MIR SINE MIR 109 262 0 261 139 0 0 chr4 107371592 107371635 -94956712 + (TG)n Simple_repeat Simple_repeat 1 43 0 3109 184 44 17 chr4 107372199 107372835 -94955512 + L1MC3 LINE L1 7133 7785 0 26 74 0 0 chr4 107373342 107373396 -94954951 + AT_rich Low_complexity Low_complexity 1 54 0 261 57 0 0 chr4 107373621 107373656 -94954691 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1028 184 34 24 chr4 107373679 107373886 -94954461 + MER6B DNA MER2_type 2 210 0 211 291 73 0 chr4 107374185 107374240 -94954107 + L2 LINE L2 3214 3272 0 215 260 192 19 chr4 107374289 107374393 -94953954 - MIR SINE MIR -127 135 14 1895 217 44 22 chr4 107375438 107375895 -94952452 - MLT1C LTR MaLR 0 467 1 232 296 38 91 chr4 107377416 107377548 -94950799 + MIR SINE MIR 123 247 -15 242 265 231 17 chr4 107377748 107377865 -94950482 + L3 LINE CR1 1435 1576 -1 217 272 66 81 chr4 107378402 107378538 -94949809 - MIR3 SINE MIR -62 146 13 2386 75 0 7 chr4 107379394 107379702 -94948645 - AluY SINE Alu -5 306 1 395 372 91 26 chr4 107379743 107379974 -94948373 - MIR SINE MIR -12 250 5 24 32 0 0 chr4 107380021 107380052 -94948295 + AT_rich Low_complexity Low_complexity 1 31 0 2242 104 0 10 chr4 107380687 107380994 -94947353 - AluSg SINE Alu -6 304 1 21 0 0 0 chr4 107381379 107381400 -94946947 + AT_rich Low_complexity Low_complexity 1 21 0 216 325 36 12 chr4 107381544 107381627 -94946720 - MIR3 SINE MIR -18 190 106 411 350 77 0 chr4 107382366 107382509 -94945838 + MIR3 SINE MIR 24 177 -31 24 0 0 0 chr4 107384314 107384338 -94944009 + AT_rich Low_complexity Low_complexity 1 24 0 352 303 72 55 chr4 107384652 107384999 -94943348 - L1M4 LINE L1 -1338 4808 4456 34 0 0 0 chr4 107386045 107386079 -94942268 + AT_rich Low_complexity Low_complexity 1 34 0 3324 16 0 0 chr4 107386321 107386701 -94941646 - L1PA3 LINE L1 0 6155 5776 23 0 0 0 chr4 107387968 107387991 -94940356 + AT_rich Low_complexity Low_complexity 1 23 0 680 281 63 52 chr4 107388721 107388952 -94939395 - MIR SINE MIR -14 248 19 220 288 144 36 chr4 107389164 107389275 -94939072 - MIR SINE MIR -67 141 19 282 220 0 0 chr4 107391612 107391671 -94936676 + MIR SINE MIR 77 135 -73 4100 169 57 62 chr4 107393005 107394015 -94934332 - L1 LINE L1 -937 5209 4205 1400 163 106 78 chr4 107394456 107394854 -94933493 + L1MA7 LINE L1 5878 6286 -5 354 328 90 5 chr4 107394872 107395061 -94933286 - MIR SINE MIR -56 206 2 196 311 0 0 chr4 107395586 107395631 -94932716 + L2 LINE L2 3217 3261 -11 25 75 0 0 chr4 107395651 107395704 -94932643 + AT_rich Low_complexity Low_complexity 1 53 0 1756 93 0 37 chr4 107396284 107396530 -94931817 + AluSq SINE Alu 63 299 -14 802 228 64 32 chr4 107397004 107397254 -94931093 + MIR SINE MIR 4 261 -1 797 222 213 41 chr4 107398635 107398978 -94929369 - MLT1I LTR MaLR 0 409 8 936 98 0 0 chr4 107399504 107399657 -94928690 - AluSg/x SINE Alu 0 316 164 321 292 67 0 chr4 107399798 107399887 -94928460 - MIR3 SINE MIR -6 202 108 211 299 52 13 chr4 107399949 107400026 -94928321 + MIR SINE MIR 183 262 0 366 294 117 48 chr4 107401278 107401611 -94926736 - L1MC/D LINE L1 -2198 5610 5255 623 319 88 33 chr4 107401684 107403079 -94925268 - L1MC/D LINE L1 -979 5167 3696 22 0 0 0 chr4 107403180 107403202 -94925145 + AT_rich Low_complexity Low_complexity 1 22 0 48 43 0 0 chr4 107403782 107403851 -94924496 + AT_rich Low_complexity Low_complexity 1 69 0 22 0 0 0 chr4 107404756 107404778 -94923569 + AT_rich Low_complexity Low_complexity 1 22 0 752 246 67 54 chr4 107404870 107405094 -94923253 + MIR SINE MIR 2 228 -34 330 324 58 46 chr4 107406170 107406411 -94921936 + L3b LINE CR1 1326 1569 -14 1933 209 89 14 chr4 107406523 107407006 -94921341 - MLT2B1 LTR ERVL 0 520 2 194 301 151 11 chr4 107407544 107407637 -94920710 - L2 LINE L2 -5 3308 3203 261 311 135 7 chr4 107408018 107408166 -94920181 + MIR SINE MIR 96 262 0 333 256 47 0 chr4 107408336 107408422 -94919925 - L1MC4 LINE L1 -1339 6703 6614 * 365 278 0 0 chr4 107408382 107408472 -94919875 + L1MC4 LINE L1 6614 6703 -1339 697 266 44 32 chr4 107408786 107409032 -94919315 - MIR SINE MIR 0 262 19 774 323 54 6 chr4 107409309 107409662 -94918685 + MLT1I LTR MaLR 1 370 -39 349 176 33 22 chr4 107410439 107410530 -94917817 - L1MD3 LINE L1 -29 7966 7875 407 200 143 38 chr4 107410600 107410705 -94917642 + FLAM_A SINE Alu 1 116 -17 2172 79 41 3 chr4 107410720 107411010 -94917337 + AluSg SINE Alu 1 301 -9 1669 227 48 16 chr4 107411035 107411475 -94916872 - L1MC4a LINE L1 -121 7687 7234 647 228 60 0 chr4 107412356 107412505 -94915842 + MIR SINE MIR 91 248 -14 537 315 31 8 chr4 107412527 107412781 -94915566 - MIR SINE MIR 0 262 3 206 290 29 0 chr4 107413334 107413403 -94914944 + (TATATG)n Simple_repeat Simple_repeat 6 76 0 282 408 7 20 chr4 107413595 107413747 -94914600 - MIR3 SINE MIR -57 151 2 380 247 12 12 chr4 107414438 107414523 -94913824 + MER81 DNA DNA 4 88 -26 427 299 78 19 chr4 107415528 107415682 -94912665 + MIR3 SINE MIR 38 200 -8 435 183 24 0 chr4 107416143 107416225 -94912122 - MIR3 SINE MIR 0 208 125 20068 101 15 2 chr4 107416509 107420275 -94908072 - L1PA7 LINE L1 -4 6150 2342 237 287 21 11 chr4 107420312 107420406 -94907941 - HAL1 LINE L1 -111 2396 2302 792 256 34 23 chr4 107420414 107420680 -94907667 - HAL1 LINE L1 -721 1786 1518 349 165 8 124 chr4 107420818 107420939 -94907408 - MLT1D LTR MaLR -176 329 223 486 349 95 66 chr4 107421099 107421538 -94906809 - L2 LINE L2 0 3272 2804 366 188 0 175 chr4 107421538 107421595 -94906752 + MER94 DNA DNA 3 68 -66 2161 117 3 13 chr4 107421595 107421902 -94906445 + AluSx SINE Alu 3 306 -6 366 188 0 175 chr4 107421902 107422004 -94906343 + MER94 DNA DNA 68 134 0 486 349 95 66 chr4 107422004 107422392 -94905955 - L2 LINE L2 -468 2804 2429 2042 84 4 0 chr4 107422875 107423138 -94905209 + AluSc SINE Alu 1 264 -45 634 280 48 36 chr4 107423794 107424044 -94904303 + MIR SINE MIR 10 262 0 369 0 0 0 chr4 107424100 107424141 -94904206 + (CA)n Simple_repeat Simple_repeat 2 42 0 220 214 119 36 chr4 107424176 107424260 -94904087 - MIR SINE MIR -150 112 22 1550 151 57 0 chr4 107424367 107424612 -94903735 - AluSx SINE Alu -53 259 1 1548 276 77 21 chr4 107424778 107425300 -94903047 - MLT1G1 LTR MaLR -7 588 38 248 217 0 12 chr4 107425313 107425396 -94902951 + (TA)n Simple_repeat Simple_repeat 2 83 0 230 250 48 0 chr4 107425428 107425512 -94902835 + L1MC4 LINE L1 6616 6703 -1339 230 302 47 0 chr4 107425470 107425556 -94902791 - L1MC4 LINE L1 -1339 6703 6614 749 252 109 4 chr4 107425568 107425798 -94902549 + L2 LINE L2 3060 3313 0 22 0 0 0 chr4 107426871 107426893 -94901454 + AT_rich Low_complexity Low_complexity 1 22 0 801 270 27 27 chr4 107427209 107427468 -94900879 - MIR SINE MIR -1 261 3 223 325 132 0 chr4 107427716 107427830 -94900517 - MIR SINE MIR -126 136 8 679 233 11 23 chr4 107427832 107428008 -94900339 - MER5B DNA MER1_type -3 175 2 607 85 39 0 chr4 107428591 107428721 -94899626 + (TA)n Simple_repeat Simple_repeat 1 135 0 234 350 146 8 chr4 107429746 107429869 -94898478 + MIR SINE MIR 47 186 -76 694 229 67 17 chr4 107431179 107431358 -94896989 + MIR SINE MIR 75 262 0 21 57 0 0 chr4 107431358 107431393 -94896954 + AT_rich Low_complexity Low_complexity 1 35 0 193 369 12 12 chr4 107431434 107431518 -94896829 + L2 LINE L2 3189 3272 0 2333 57 3 0 chr4 107431535 107431852 -94896495 + AluY SINE Alu 1 318 0 2210 115 0 0 chr4 107431938 107432242 -94896105 - AluSq SINE Alu -8 305 2 500 274 108 27 chr4 107435445 107435668 -94892679 - MIR SINE MIR -13 249 9 183 255 28 132 chr4 107436350 107436456 -94891891 + L2 LINE L2 2122 2216 -1098 29 0 0 0 chr4 107436722 107436751 -94891596 + AT_rich Low_complexity Low_complexity 1 29 0 296 367 68 28 chr4 107438026 107438350 -94889997 + L2 LINE L2 1758 2094 -1220 1986 86 8 4 chr4 107440358 107440625 -94887722 - AluSx SINE Alu -1 311 44 284 295 52 69 chr4 107440693 107440866 -94887481 + L2 LINE L2 3144 3313 0 745 285 59 5 chr4 107440932 107441172 -94887175 - MIR SINE MIR -11 251 2 22 0 0 0 chr4 107442959 107442981 -94885366 + AT_rich Low_complexity Low_complexity 1 22 0 193 93 0 47 chr4 107443160 107443203 -94885144 + (TA)n Simple_repeat Simple_repeat 1 41 0 405 242 22 11 chr4 107443471 107443562 -94884785 + MIR3 SINE MIR 117 208 0 225 156 0 0 chr4 107443613 107443658 -94884689 + LTR66 LTR ERVL 394 438 -172 931 259 37 31 chr4 107443729 107444054 -94884293 + L2 LINE L2 2298 2624 -690 352 256 74 25 chr4 107444099 107444220 -94884127 + MER20 DNA MER1_type 44 170 -49 394 288 250 28 chr4 107444330 107444726 -94883621 + L2 LINE L2 2820 3303 -10 206 312 37 55 chr4 107445191 107445300 -94883047 + MER5B DNA MER1_type 72 178 0 22 35 0 0 chr4 107445927 107445956 -94882391 + AT_rich Low_complexity Low_complexity 1 29 0 351 136 0 0 chr4 107447263 107447322 -94881025 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 2211 81 27 3 chr4 107448094 107448389 -94879958 + AluSq SINE Alu 1 302 -11 199 81 108 0 chr4 107448535 107448572 -94879775 - L2 LINE L2 0 3313 3273 1187 203 79 0 chr4 107450450 107450716 -94877631 - AluJo SINE Alu 0 312 26 344 156 66 8 chr4 107451049 107451171 -94877176 + (TA)n Simple_repeat Simple_repeat 2 130 0 183 250 0 0 chr4 107451588 107451640 -94876707 + GA-rich Low_complexity Low_complexity 2 53 0 6861 65 9 3 chr4 107451982 107453064 -94875283 - L1PA7 LINE L1 0 6154 5076 558 286 102 75 chr4 107453832 107454142 -94874205 - HAL1 LINE L1 -1385 1122 822 2131 117 7 7 chr4 107454142 107454451 -94873896 + AluSx SINE Alu 1 309 -3 558 286 102 75 chr4 107454451 107454901 -94873446 - HAL1 LINE L1 -1685 822 341 334 319 56 6 chr4 107455881 107456041 -94872306 + MIR SINE MIR 78 245 -17 406 302 34 20 chr4 107456238 107456387 -94871960 - MIR SINE MIR -76 186 36 409 295 54 36 chr4 107456418 107456584 -94871763 + L2 LINE L2 3137 3305 -8 2557 40 0 0 chr4 107456907 107457203 -94871144 + AluY SINE Alu 1 296 -15 930 236 43 0 chr4 107458652 107458860 -94869487 + MER20 DNA MER1_type 2 218 -1 349 296 100 65 chr4 107459132 107459362 -94868985 + MIR SINE MIR 2 239 -23 292 319 21 0 chr4 107462341 107462435 -94865912 - MIR3 SINE MIR -6 202 107 357 290 43 82 chr4 107464408 107464615 -94863732 + MIR3 SINE MIR 2 200 -8 184 246 0 72 chr4 107464764 107464833 -94863514 + MIR SINE MIR 129 192 -70 7746 22 2 2 chr4 107465568 107466734 -94861613 - L1PA3 LINE L1 0 6155 4990 9467 27 0 2 chr4 107466734 107467865 -94860482 + L1P LINE L1 3896 5024 -1122 4325 145 16 7 chr4 107471123 107471827 -94856520 + MER50 LTR ERV1 2 711 -23 254 367 13 0 chr4 107471898 107471977 -94856370 + MER5B DNA MER1_type 1 80 -98 2379 89 0 0 chr4 107473646 107473950 -94854397 - AluSc SINE Alu 0 309 6 310 333 72 52 chr4 107474999 107475347 -94853000 + HAL1b LINE L1 448 802 -546 225 132 0 0 chr4 107475481 107475519 -94852828 + (TA)n Simple_repeat Simple_repeat 2 39 0 196 317 0 17 chr4 107475728 107475788 -94852559 - MIR SINE MIR -113 95 37 400 286 18 18 chr4 107475890 107476001 -94852346 - MIR SINE MIR -50 212 101 987 202 86 14 chr4 107476095 107476531 -94851816 - MER34 LTR ERV1 0 542 27 366 274 57 30 chr4 107476939 107477157 -94851190 + L1ME4a LINE L1 4047 4269 -1877 736 296 116 23 chr4 107477692 107478208 -94850139 + L1ME4a LINE L1 5515 6078 -43 1881 128 4 0 chr4 107478265 107478530 -94849817 + AluSx SINE Alu 3 268 -44 229 49 0 49 chr4 107478537 107478578 -94849769 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 249 33 0 0 chr4 107478707 107478737 -94849610 + (TC)n Simple_repeat Simple_repeat 1 30 0 1451 159 116 0 chr4 107478739 107479015 -94849332 - AluJb SINE Alu -2 310 3 213 276 51 10 chr4 107479073 107479171 -94849176 + (GTATG)n Simple_repeat Simple_repeat 1 102 0 237 278 41 0 chr4 107479334 107479431 -94848916 - L1ME4a LINE L1 -176 5945 5845 229 216 0 0 chr4 107480189 107480240 -94848107 + A-rich Low_complexity Low_complexity 1 51 0 229 365 19 65 chr4 107480449 107480663 -94847684 - L3 LINE CR1 -355 1222 1019 237 191 43 0 chr4 107481224 107481271 -94847076 - MIR SINE MIR -10 252 204 30 0 0 0 chr4 107483243 107483273 -94845074 + AT_rich Low_complexity Low_complexity 1 30 0 549 308 50 20 chr4 107484074 107484272 -94844075 + MIR SINE MIR 48 251 -11 450 315 69 43 chr4 107484464 107484696 -94843651 + MIR SINE MIR 6 243 -19 21 36 0 0 chr4 107484720 107484748 -94843599 + AT_rich Low_complexity Low_complexity 1 28 0 1913 131 24 7 chr4 107484839 107485137 -94843210 + AluSx SINE Alu 1 303 -9 28 61 0 0 chr4 107485657 107485706 -94842641 + AT_rich Low_complexity Low_complexity 1 49 0 386 265 197 7 chr4 107485755 107485902 -94842445 - MIR SINE MIR -79 183 9 395 387 70 29 chr4 107485995 107486336 -94842011 + L1MEc LINE L1 112 466 -5930 2642 257 56 74 chr4 107486733 107487554 -94840793 + L1MEc LINE L1 669 1503 -4712 2455 57 0 3 chr4 107487554 107487854 -94840493 - AluY SINE Alu -12 299 1 2642 257 56 74 chr4 107487854 107489842 -94838505 + L1MEc LINE L1 1503 3404 -2811 2189 111 0 3 chr4 107489842 107490139 -94838208 + AluSx SINE Alu 1 296 -16 2642 257 56 74 chr4 107490139 107490245 -94838102 + L1MEc LINE L1 3404 3510 -2705 479 227 59 0 chr4 107490261 107490380 -94837967 + L1MC4a LINE L1 6099 6224 -1584 * 972 214 14 82 chr4 107490365 107490645 -94837702 + L1MC4a LINE L1 6446 6706 -1102 1578 194 84 112 chr4 107490647 107491255 -94837092 + L1ME1 LINE L1 5365 5955 -209 2846 192 41 92 chr4 107491285 107492044 -94836303 - MER50 LTR ERV1 -7 727 8 457 284 62 5 chr4 107492052 107492246 -94836101 + L1ME1 LINE L1 5957 6161 -5 444 235 75 31 chr4 107492812 107493000 -94835347 + MIR SINE MIR 30 229 -33 250 65 22 22 chr4 107494528 107494574 -94833773 + (TA)n Simple_repeat Simple_repeat 2 47 0 312 51 0 0 chr4 107496080 107496119 -94832228 + U2 snRNA snRNA 1 39 -149 849 234 91 0 chr4 107496866 107497063 -94831284 + MER20 DNA MER1_type 5 219 0 190 301 72 0 chr4 107497741 107497824 -94830523 + MIR SINE MIR 118 206 -56 406 305 61 18 chr4 107497840 107498004 -94830343 + MIR SINE MIR 18 188 -74 406 295 8 16 chr4 107498023 107498145 -94830202 + MER94 DNA DNA 14 134 0 339 211 105 68 chr4 107498694 107498827 -94829520 + MER117 DNA MER1_type 57 194 -3 2714 3 0 10 chr4 107499266 107499574 -94828773 - AluYa5 SINE Alu -6 305 1 207 154 19 19 chr4 107500450 107500502 -94827845 + (TA)n Simple_repeat Simple_repeat 2 53 0 395 235 68 62 chr4 107500706 107500868 -94827479 + MIR SINE MIR 36 198 -64 22 56 0 0 chr4 107500885 107500921 -94827426 + AT_rich Low_complexity Low_complexity 1 36 0 382 323 151 34 chr4 107500930 107501512 -94826835 - L2 LINE L2 -41 3272 2618 1568 230 75 65 chr4 107501547 107502130 -94826217 - MLT1E LTR MaLR -1 592 4 2072 113 7 0 chr4 107502215 107502515 -94825832 - AluY SINE Alu -9 302 1 677 158 12 28 chr4 107502804 107503054 -94825293 + GA-rich Low_complexity Low_complexity 1 246 0 1620 186 14 17 chr4 107503183 107503478 -94824869 + AluJo SINE Alu 5 298 -14 3129 102 7 18 chr4 107503483 107503933 -94824414 - MLT2A2 LTR ERVL -8 445 1 714 243 51 63 chr4 107504347 107504602 -94823745 - L2 LINE L2 -41 3272 3021 878 166 13 7 chr4 107504602 107504753 -94823594 + AluSx SINE Alu 3 154 -158 1980 108 7 0 chr4 107504756 107505025 -94823322 + AluSg1 SINE Alu 23 293 -16 2206 117 3 7 chr4 107505550 107505859 -94822488 - AluSx SINE Alu -4 308 1 413 291 129 52 chr4 107505939 107506248 -94822099 - MLT1H LTR MaLR -182 367 35 360 324 63 27 chr4 107506393 107506615 -94821732 + L1MC/D LINE L1 5259 5488 -2320 346 281 194 20 chr4 107506695 107506891 -94821456 + L2 LINE L2 2936 3165 -148 593 51 0 0 chr4 107506891 107506970 -94821377 - L1P LINE L1 -750 5404 5326 624 92 0 0 chr4 107506970 107507055 -94821292 + L1PA7 LINE L1 6063 6149 -5 468 281 68 7 chr4 107507089 107507235 -94821112 + L2 LINE L2 3159 3313 0 224 338 71 15 chr4 107507428 107507628 -94820719 - L2 LINE L2 0 3272 3065 23 33 0 0 chr4 107507791 107507821 -94820526 + AT_rich Low_complexity Low_complexity 1 30 0 1247 207 105 59 chr4 107509058 107509331 -94819016 + MLT1C LTR MaLR 1 303 -164 2091 152 57 14 chr4 107509331 107509680 -94818667 + THE1B LTR MaLR 1 364 0 1247 207 105 59 chr4 107509680 107509845 -94818502 + MLT1C LTR MaLR 303 459 -8 2007 111 4 0 chr4 107511601 107511881 -94816466 + AluSg1 SINE Alu 1 281 -28 234 0 0 0 chr4 107511881 107511907 -94816440 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr4 107511907 107511930 -94816417 + AT_rich Low_complexity Low_complexity 1 23 0 262 127 109 0 chr4 107513567 107513622 -94814725 + MLT1A1 LTR MaLR 1 61 -304 1482 179 55 0 chr4 107513724 107513997 -94814350 + MLT1A1 LTR MaLR 61 348 -17 844 317 21 18 chr4 107514140 107514474 -94813873 + LTR16B LTR ERVL 124 458 -6 813 208 24 0 chr4 107514586 107514754 -94813593 - MSTD LTR MaLR -222 174 3 200 358 102 15 chr4 107515747 107515884 -94812463 - MIR SINE MIR -61 201 53 2344 143 36 24 chr4 107516412 107516833 -94811514 + MSTB1 LTR MaLR 7 432 0 698 259 29 35 chr4 107517664 107517980 -94810367 + L1M4 LINE L1 4454 4767 -1379 * 1333 269 40 35 chr4 107517973 107518201 -94810146 + L1ME1 LINE L1 4632 4857 -1289 1991 215 33 73 chr4 107518201 107518778 -94809569 + MLT2B3 LTR ERVL 1 554 0 1333 269 40 35 chr4 107518778 107519156 -94809191 + L1ME1 LINE L1 4857 5241 -905 2495 232 61 15 chr4 107519170 107519963 -94808384 + L1ME1 LINE L1 5298 6158 -8 227 343 81 25 chr4 107520354 107520552 -94807795 - Charlie8 DNA MER1_type -2199 218 10 30 27 0 0 chr4 107520635 107520672 -94807675 + AT_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chr4 107520933 107520967 -94807380 + AT_rich Low_complexity Low_complexity 1 34 0 21 95 0 0 chr4 107521042 107521105 -94807242 + AT_rich Low_complexity Low_complexity 1 63 0 31 44 0 0 chr4 107521459 107521504 -94806843 + AT_rich Low_complexity Low_complexity 1 45 0 429 319 203 4 chr4 107523455 107523738 -94804609 - L2 LINE L2 -186 3127 2791 242 182 0 0 chr4 107525373 107525417 -94802930 + L1MCa LINE L1 277 320 -6106 1403 232 102 5 chr4 107525435 107525827 -94802520 + L1M4 LINE L1 3952 4381 -1765 14032 183 30 21 chr4 107525836 107527020 -94801327 + L1MA4 LINE L1 3 1175 -5307 2027 124 0 45 chr4 107527020 107527334 -94801013 + AluSg SINE Alu 1 300 -10 14032 183 30 21 chr4 107527334 107527665 -94800682 + L1MA4 LINE L1 1175 1501 -4981 3162 47 91 0 chr4 107527665 107528104 -94800243 + L1PA7 LINE L1 5693 6168 0 14032 183 30 21 chr4 107528104 107528415 -94799932 + L1MA4 LINE L1 1501 1808 -4674 2863 122 16 0 chr4 107528415 107528851 -94799496 - L1PA13 LINE L1 -1 6162 5720 14032 183 30 21 chr4 107528851 107533411 -94794936 + L1MA4 LINE L1 1808 6471 -11 30 45 0 0 chr4 107533411 107533455 -94794892 + AT_rich Low_complexity Low_complexity 1 44 0 1111 243 11 0 chr4 107533466 107533746 -94794601 + L1M4 LINE L1 4405 4687 -1459 2305 86 0 0 chr4 107533747 107534048 -94794299 - AluY SINE Alu -10 301 1 264 30 0 0 chr4 107536370 107536403 -94791944 + (CA)n Simple_repeat Simple_repeat 1 33 0 250 183 127 42 chr4 107536994 107537065 -94791282 - L2 LINE L2 -7 3306 3230 16438 150 32 13 chr4 107537188 107541022 -94787325 - L1MA3 LINE L1 0 7724 3966 2501 68 0 0 chr4 107541022 107541329 -94787018 - AluY SINE Alu -4 307 1 16438 150 32 13 chr4 107541329 107542690 -94785657 - L1MA3 LINE L1 -3758 3966 2633 3474 34 2 0 chr4 107542690 107543108 -94785239 - L1PA3 LINE L1 0 6155 5737 16438 150 32 13 chr4 107543108 107544392 -94783955 - L1MA3 LINE L1 -5091 2633 1109 649 157 35 9 chr4 107544398 107544513 -94783834 - L1MA3 LINE L1 -7432 133 16 998 171 9 46 chr4 107544566 107544782 -94783565 + MER3 DNA MER1_type 1 208 -1 470 240 248 7 chr4 107545357 107545572 -94782775 + MIR SINE MIR 2 262 0 1834 190 50 18 chr4 107546126 107546510 -94781837 + MSTD LTR MaLR 1 396 0 553 333 31 31 chr4 107546976 107547204 -94781143 + MIR SINE MIR 1 228 -34 323 276 45 30 chr4 107547370 107547569 -94780778 + HAL1 LINE L1 1350 1551 -956 569 138 0 0 chr4 107547615 107547702 -94780645 + AluSg/x SINE Alu 216 302 -7 328 387 7 13 chr4 107547702 107547852 -94780495 + HAL1 LINE L1 1590 1738 -769 251 325 66 10 chr4 107548267 107548464 -94779883 + L1M4 LINE L1 2144 2351 -3795 2075 174 78 2 chr4 107548557 107548953 -94779394 + MSTB LTR MaLR 1 426 0 8921 187 13 4 chr4 107548953 107550589 -94777758 + MSTB-int LTR MaLR 1 1651 0 2150 166 64 12 chr4 107550590 107550994 -94777353 + MSTB LTR MaLR 2 426 0 1846 143 7 0 chr4 107551129 107551434 -94776913 + AluSx SINE Alu 1 307 0 3264 275 129 8 chr4 107551469 107552668 -94775679 + L2 LINE L2 1700 3041 -272 2572 65 3 0 chr4 107552728 107553038 -94775309 + AluY SINE Alu 1 311 0 915 234 121 7 chr4 107553059 107553341 -94775006 + MER110 LTR ERV1 166 479 -12 233 311 66 33 chr4 107553342 107553525 -94774822 + L1P LINE L1 3561 3749 -2397 598 300 131 14 chr4 107553820 107554414 -94773933 + L1M4 LINE L1 4060 4723 -1423 490 344 86 0 chr4 107554445 107554631 -94773716 + MIR SINE MIR 61 262 0 285 196 36 0 chr4 107555112 107555168 -94773179 + MIR SINE MIR 96 153 -109 282 247 90 11 chr4 107557744 107557833 -94770514 + L2 LINE L2 3205 3300 -13 421 331 74 6 chr4 107557880 107558055 -94770292 + MIR SINE MIR 60 246 -16 300 343 57 61 chr4 107558460 107558705 -94769642 + MIR SINE MIR 3 246 -16 198 305 42 21 chr4 107560255 107560350 -94767997 + MIR SINE MIR 110 206 -56 310 312 88 24 chr4 107561202 107561372 -94766975 - L2 LINE L2 -215 3057 2877 25 65 0 0 chr4 107562145 107562191 -94766156 + AT_rich Low_complexity Low_complexity 1 46 0 238 216 0 20 chr4 107563160 107563211 -94765136 - MIR SINE MIR 0 262 213 2294 76 0 0 chr4 107563240 107563531 -94764816 - AluY SINE Alu -20 291 1 636 229 69 73 chr4 107563531 107563749 -94764598 - MIR SINE MIR -28 234 18 345 280 100 10 chr4 107563762 107563862 -94764485 - MIR SINE MIR -63 145 37 5195 148 40 5 chr4 107564905 107566009 -94762338 - L1PA16 LINE L1 -1 6165 5031 457 336 80 8 chr4 107566298 107566536 -94761811 - MIR SINE MIR -2 260 6 186 143 0 0 chr4 107566701 107566736 -94761611 + (TC)n Simple_repeat Simple_repeat 2 36 0 471 252 16 0 chr4 107566770 107566893 -94761454 + MER69 DNA AcHobo 12 136 -2390 21 0 0 0 chr4 107567522 107567543 -94760804 + AT_rich Low_complexity Low_complexity 1 21 0 589 254 14 59 chr4 107567544 107567764 -94760583 - L2 LINE L2 0 3313 3104 4370 133 17 4 chr4 107567791 107568491 -94759856 + L1PB3 LINE L1 5441 6149 -5 4080 107 10 3 chr4 107569786 107570403 -94757944 - L1MA2 LINE L1 0 6304 5684 250 125 21 42 chr4 107570651 107570699 -94757648 + L2 LINE L2 3263 3309 -4 298 342 9 9 chr4 107571159 107571273 -94757074 - MIR3 SINE MIR -39 169 56 1928 140 30 7 chr4 107571502 107571802 -94756545 + AluSx SINE Alu 1 307 -5 21 57 0 0 chr4 107571830 107571865 -94756482 + AT_rich Low_complexity Low_complexity 1 35 0 241 327 58 0 chr4 107573508 107573612 -94754735 - MIR SINE MIR -150 112 3 737 267 71 43 chr4 107574544 107574675 -94753672 - L2 LINE L2 -1035 2279 2153 2430 87 3 3 chr4 107574675 107574985 -94753362 + AluSg SINE Alu 1 310 0 737 267 71 43 chr4 107574985 107575175 -94753172 - L2 LINE L2 -1161 2153 1949 228 146 24 0 chr4 107575792 107575833 -94752514 - L2 LINE L2 -1375 1939 1898 2475 68 3 3 chr4 107575958 107576269 -94752078 + AluY SINE Alu 1 311 0 267 31 0 0 chr4 107576454 107576486 -94751861 + (CA)n Simple_repeat Simple_repeat 1 32 0 200 330 0 66 chr4 107576501 107576538 -94751809 + L3 LINE CR1 918 956 -621 304 58 19 19 chr4 107576538 107576590 -94751757 + (TA)n Simple_repeat Simple_repeat 2 53 0 2266 90 3 0 chr4 107576590 107576879 -94751468 - AluY SINE Alu -21 290 1 200 330 0 66 chr4 107576879 107576946 -94751401 + L3 LINE CR1 954 1016 -561 307 280 32 115 chr4 107577373 107577474 -94750873 + MER5A DNA MER1_type 20 105 -73 1695 172 42 25 chr4 107577474 107577829 -94750518 + MLT1A1 LTR MaLR 5 365 0 307 280 32 115 chr4 107577829 107577884 -94750463 + MER5A DNA MER1_type 105 163 -15 2444 77 0 10 chr4 107578062 107578411 -94749936 + AluSc SINE Alu 1 346 0 2045 156 12 3 chr4 107578468 107578801 -94749546 - MER1B DNA MER1_type -1 336 1 563 166 360 14 chr4 107578943 107579082 -94749265 + MER5A DNA MER1_type 1 187 -2 500 96 0 36 chr4 107579439 107579522 -94748825 + MADE1 DNA Mariner 1 80 0 598 177 20 95 chr4 107579701 107579848 -94748499 + FLAM_A SINE Alu 7 142 0 1664 198 30 25 chr4 107581258 107581621 -94746726 + MLT1A1 LTR MaLR 1 365 0 475 208 287 37 chr4 107582922 107583138 -94745209 - MLT1J LTR MaLR -15 496 227 2367 74 0 3 chr4 107583141 107583480 -94744867 + AluY SINE Alu 1 311 0 750 185 14 104 chr4 107583510 107583622 -94744725 + MSTD LTR MaLR 1 87 -309 3646 118 89 27 chr4 107583622 107584250 -94744097 - PABL_B LTR ERV1 0 667 1 750 185 14 104 chr4 107584250 107584348 -94743999 + MSTD LTR MaLR 87 192 -204 422 47 70 128 chr4 107584367 107584453 -94743894 - PABL_B LTR ERV1 -414 253 173 281 93 19 74 chr4 107584437 107584491 -94743856 - PABL_B LTR ERV1 -616 51 1 * 317 256 0 11 chr4 107584493 107584583 -94743764 + MSTD LTR MaLR 95 183 -213 602 98 57 90 chr4 107584608 107584730 -94743617 - PABL_B LTR ERV1 -414 253 136 816 186 83 0 chr4 107584761 107584917 -94743430 + MSTD LTR MaLR 228 396 0 6166 234 48 47 chr4 107584921 107585072 -94743275 + MSTD-int LTR MaLR 4 153 -1582 2200 109 0 0 chr4 107585072 107585379 -94742968 - AluY SINE Alu 0 307 1 1942 91 0 0 chr4 107585384 107585626 -94742721 - AluY SINE Alu -69 242 1 6166 234 48 47 chr4 107585626 107587197 -94741150 + MSTD-int LTR MaLR 156 1735 0 1785 190 58 13 chr4 107587197 107587576 -94740771 + MSTD LTR MaLR 1 396 0 341 311 113 0 chr4 107587579 107587730 -94740617 - MLT1J LTR MaLR -306 205 38 348 225 189 0 chr4 107587733 107587844 -94740503 + MER94 DNA DNA 1 132 -2 270 323 108 20 chr4 107587923 107588118 -94740229 - MIR SINE MIR -31 231 20 762 247 42 21 chr4 107588139 107588422 -94739925 + L1ME1 LINE L1 5824 6112 -54 295 397 23 11 chr4 107589006 107589180 -94739167 - L2 LINE L2 -573 2741 2566 210 162 0 0 chr4 107589659 107589696 -94738651 + T-rich Low_complexity Low_complexity 1 37 0 603 268 109 6 chr4 107590546 107590729 -94737618 + MIR SINE MIR 36 237 -25 283 160 40 23 chr4 107591726 107591901 -94736446 + (TA)n Simple_repeat Simple_repeat 1 178 0 194 316 132 9 chr4 107592284 107592364 -94735983 + L3b LINE CR1 1106 1205 -378 2191 102 0 20 chr4 107592364 107592668 -94735679 + AluSg1 SINE Alu 1 298 -11 194 316 132 9 chr4 107592668 107592701 -94735646 + L3b LINE CR1 1205 1233 -350 368 322 125 7 chr4 107592735 107592887 -94735460 + MIR SINE MIR 31 200 -62 2148 253 43 30 chr4 107593096 107593500 -94734847 + L1ME1 LINE L1 5409 5829 -337 279 0 0 0 chr4 107593500 107593531 -94734816 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2148 253 43 30 chr4 107593531 107593869 -94734478 + L1ME1 LINE L1 5829 6161 -5 239 148 0 37 chr4 107593962 107594016 -94734331 + FAM SINE Alu 126 177 -2 929 203 0 16 chr4 107594016 107594198 -94734149 + AluJb SINE Alu 120 298 -14 405 293 50 20 chr4 107594296 107594596 -94733751 + L1M4 LINE L1 3138 3446 -2700 2180 97 37 0 chr4 107594612 107594911 -94733436 - AluSx SINE Alu -2 310 1 25 0 0 0 chr4 107594960 107594985 -94733362 + AT_rich Low_complexity Low_complexity 1 25 0 1326 254 142 19 chr4 107595079 107595595 -94732752 + MLT1E LTR MaLR 15 593 0 685 289 32 58 chr4 107595667 107596131 -94732216 + L1M4 LINE L1 3689 4164 -1982 2378 79 0 32 chr4 107596131 107596447 -94731900 - AluY SINE Alu -5 306 1 685 289 32 58 chr4 107596447 107596486 -94731861 + L1M4 LINE L1 4164 4202 -1944 746 223 213 5 chr4 107596486 107596683 -94731664 - MER8 DNA MER2_type 0 239 2 685 289 32 58 chr4 107596683 107596869 -94731478 + L1M4 LINE L1 4202 4361 -1785 911 293 66 27 chr4 107596899 107597264 -94731083 - LTR16A LTR ERVL -9 441 63 507 265 75 36 chr4 107597327 107597511 -94730836 + L1M4 LINE L1 4420 4595 -1551 285 29 0 0 chr4 107597511 107597545 -94730802 + (TG)n Simple_repeat Simple_repeat 2 35 0 507 265 75 36 chr4 107597545 107597718 -94730629 + L1M4 LINE L1 4595 4791 -1355 3989 265 129 60 chr4 107597742 107599780 -94728567 + L2 LINE L2 723 2936 -377 775 212 0 0 chr4 107599780 107599912 -94728435 - FLAM_A SINE Alu -1 132 1 3989 265 129 60 chr4 107599912 107600139 -94728208 + L2 LINE L2 2936 3146 -167 413 307 24 12 chr4 107600225 107600391 -94727956 + L2 LINE L2 3146 3313 0 1925 155 0 31 chr4 107601970 107602292 -94726055 + AluSx SINE Alu 1 312 0 1913 215 60 19 chr4 107602931 107603414 -94724933 + MLT1D LTR MaLR 1 503 -2 297 303 8 8 chr4 107603423 107603545 -94724802 - MLT1L LTR MaLR -4 611 490 237 279 51 0 chr4 107603812 107603891 -94724456 - MLT1L LTR MaLR -415 200 118 302 208 6 164 chr4 107603930 107603982 -94724365 + MER94 DNA DNA 1 60 -74 3413 97 2 6 chr4 107603982 107604478 -94723869 + L1PB1 LINE L1 5658 6151 0 302 208 6 164 chr4 107604478 107604584 -94723763 + MER94 DNA DNA 60 134 0 2160 105 3 32 chr4 107604671 107604984 -94723363 + AluY SINE Alu 1 304 -7 1801 151 17 91 chr4 107605159 107605577 -94722770 - MLT1B LTR MaLR -3 387 1 193 330 55 0 chr4 107605607 107605698 -94722649 + L3 LINE CR1 1144 1239 -338 353 58 19 0 chr4 107606183 107606235 -94722112 + (CA)n Simple_repeat Simple_repeat 1 53 0 1595 296 56 42 chr4 107606336 107607187 -94721160 - ERVL-F LTR ERVL -4089 1675 813 1381 143 48 15 chr4 107607213 107607485 -94720862 + L1PB4 LINE L1 5876 6156 0 21 36 0 0 chr4 107607546 107607574 -94720773 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 107607626 107607654 -94720693 + AT_rich Low_complexity Low_complexity 1 28 0 2304 119 0 0 chr4 107607660 107607971 -94720376 + AluSx SINE Alu 1 311 -1 2209 98 0 7 chr4 107608173 107608492 -94719855 - AluSg SINE Alu 0 317 1 269 297 35 21 chr4 107608629 107608774 -94719573 - ERVL-F LTR ERVL -5325 439 293 964 290 113 26 chr4 107608844 107609340 -94719007 - MLT2F LTR ERVL -122 541 3 347 290 0 19 chr4 107609541 107609648 -94718699 + (TATG)n Simple_repeat Simple_repeat 2 106 0 22 70 0 0 chr4 107609663 107609706 -94718641 + AT_rich Low_complexity Low_complexity 1 43 0 211 194 0 0 chr4 107610803 107610839 -94717508 + (CATA)n Simple_repeat Simple_repeat 2 37 0 1511 283 170 29 chr4 107611615 107611723 -94716624 + L2 LINE L2 583 674 -2640 379 217 48 106 chr4 107611723 107611785 -94716562 + MER5B DNA MER1_type 1 65 -113 2319 70 0 3 chr4 107611785 107612083 -94716264 + AluY SINE Alu 1 297 -14 379 217 48 106 chr4 107612083 107612209 -94716138 + MER5B DNA MER1_type 65 178 0 1511 283 170 29 chr4 107612209 107612310 -94716037 + L2 LINE L2 674 759 -2555 526 14 159 0 chr4 107612310 107612379 -94715968 + MADE1 DNA Mariner 1 80 0 1511 283 170 29 chr4 107612379 107612974 -94715373 + L2 LINE L2 759 1502 -1812 192 303 0 45 chr4 107612970 107613036 -94715311 + L2 LINE L2 3246 3308 -5 * 1878 185 0 3 chr4 107613267 107613580 -94714767 - AluJb SINE Alu 0 312 1 585 280 6 42 chr4 107614115 107614283 -94714064 - MIR SINE MIR -70 192 31 22 0 0 0 chr4 107615029 107615051 -94713296 + AT_rich Low_complexity Low_complexity 1 22 0 2095 289 17 10 chr4 107615946 107616601 -94711746 - L2 LINE L2 -729 2585 1888 1673 231 38 38 chr4 107616652 107617150 -94711197 + MLT1D LTR MaLR 1 498 -7 2420 87 0 0 chr4 107617532 107617830 -94710517 + AluSg SINE Alu 1 298 -12 689 352 85 38 chr4 107618009 107618452 -94709895 + L2 LINE L2 2383 2804 -468 2382 65 7 0 chr4 107618452 107618745 -94709602 - AluY SINE Alu -16 295 1 689 352 85 38 chr4 107618745 107619138 -94709209 + L2 LINE L2 2804 3263 -9 2020 165 11 37 chr4 107619254 107619629 -94708718 - MLT1A1 LTR MaLR 0 365 1 279 266 101 0 chr4 107621557 107621636 -94706711 - MER91B DNA MER1_type -8 182 96 640 281 22 22 chr4 107622223 107622447 -94705900 - L1M4 LINE L1 -6300 242 19 28 48 0 0 chr4 107622782 107622824 -94705523 + AT_rich Low_complexity Low_complexity 1 42 0 869 174 16 5 chr4 107623137 107623327 -94705020 - L1P LINE L1 -869 5277 5086 712 169 0 8 chr4 107623388 107623512 -94704835 + AluSg/x SINE Alu 174 296 -16 4909 145 5 8 chr4 107623513 107624355 -94703992 + L1PA16 LINE L1 5308 6146 -20 312 208 14 153 chr4 107624835 107624979 -94703368 - MER94 DNA DNA 0 134 11 982 119 57 57 chr4 107625162 107625355 -94702992 - THE1B LTR MaLR 0 364 172 188 83 0 28 chr4 107625355 107625391 -94702956 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 41043 33 21 1 chr4 107625411 107631439 -94696908 - L1PA2 LINE L1 -4 6151 1 1290 91 0 11 chr4 107631439 107631625 -94696722 - THE1B LTR MaLR -180 184 1 2192 123 7 3 chr4 107632055 107632363 -94695984 - AluSg SINE Alu -1 309 1 486 86 14 0 chr4 107632826 107632896 -94695451 + L1PA16 LINE L1 5836 5906 -260 383 339 48 16 chr4 107634161 107634350 -94693997 + MIR SINE MIR 7 201 -61 2358 108 0 3 chr4 107634887 107635194 -94693153 - AluSx SINE Alu -2 310 5 440 317 74 15 chr4 107635728 107635999 -94692348 + MLT1J1 LTR MaLR 155 441 -5 388 300 114 30 chr4 107636898 107637132 -94691215 + MIR SINE MIR 9 262 0 229 302 190 9 chr4 107637768 107637884 -94690463 - MIR SINE MIR -81 181 45 590 282 71 50 chr4 107637985 107638365 -94689982 - LTR16C LTR ERVL -2 489 102 683 271 62 5 chr4 107638687 107638897 -94689450 + MIR SINE MIR 23 244 -18 389 247 48 38 chr4 107639730 107639916 -94688431 + MER5A DNA MER1_type 1 188 -1 3783 272 119 52 chr4 107640336 107641165 -94687182 - L2 LINE L2 0 3313 2541 7839 17 0 0 chr4 107641165 107642200 -94686147 + L1PA2 LINE L1 5121 6155 0 3783 272 119 52 chr4 107642200 107643355 -94684992 - L2 LINE L2 -772 2541 1201 479 298 99 25 chr4 107644806 107645048 -94683299 + MIR SINE MIR 3 262 0 201 180 100 0 chr4 107645127 107645177 -94683170 + MIR SINE MIR 96 150 -112 1436 75 0 0 chr4 107645234 107645408 -94682939 + AluY SINE Alu 44 217 -94 23 33 0 0 chr4 107645420 107645450 -94682897 + AT_rich Low_complexity Low_complexity 1 30 0 2037 165 28 40 chr4 107645455 107645850 -94682497 - MLT1B LTR MaLR 0 390 1 44 35 0 0 chr4 107646124 107646182 -94682165 + AT_rich Low_complexity Low_complexity 1 58 0 5273 105 7 4 chr4 107646184 107646994 -94681353 - L1PA8 LINE L1 -1004 5142 4330 6931 64 6 3 chr4 107646995 107647995 -94680352 + L1PA8 LINE L1 5157 6159 -13 132 43 0 0 chr4 107647995 107648183 -94680164 + AT_rich Low_complexity Low_complexity 1 188 0 359 303 64 21 chr4 107648325 107648513 -94679834 + MLT1L LTR MaLR 3 198 -417 501 204 31 6 chr4 107648700 107648919 -94679428 + MER34 LTR ERV1 12 278 -264 690 180 100 0 chr4 107648990 107649140 -94679207 + MER34 LTR ERV1 378 542 0 2207 188 10 0 chr4 107649179 107649583 -94678764 - LOR1b LTR ERV1 0 461 54 289 266 223 0 chr4 107650306 107650400 -94677947 + L2 LINE L2 3199 3313 0 734 297 33 6 chr4 107651623 107651876 -94676471 + MIR SINE MIR 6 262 0 444 251 71 86 chr4 107651884 107652375 -94675972 - L1ME4a LINE L1 -78 6043 5560 1587 183 37 16 chr4 107652566 107652943 -94675404 + MER58D DNA MER1_type 1 385 -1 31 26 0 0 chr4 107652952 107652990 -94675357 + AT_rich Low_complexity Low_complexity 1 38 0 366 271 130 31 chr4 107654180 107654372 -94673975 - MIR SINE MIR -23 239 29 1329 107 0 0 chr4 107654479 107654648 -94673699 + AluSg/x SINE Alu 71 239 -71 4950 139 76 90 chr4 107654648 107656234 -94672113 + pTR5 LTR ERV1 743 2438 0 28386 95 5 4 chr4 107656237 107660325 -94668022 + HERV9 LTR ERV1 1 4092 -4307 5982 40 4 0 chr4 107660338 107661094 -94667253 - L1PA5 LINE L1 0 6154 5396 15801 92 9 12 chr4 107661094 107665945 -94662402 + HERV9 LTR ERV1 504 8399 0 5074 95 15 0 chr4 107665961 107666635 -94661712 + LTR12 LTR ERV1 5 688 0 430 234 70 0 chr4 107666801 107666929 -94661418 + MER103 DNA DNA 23 159 -7 211 307 128 63 chr4 107667369 107667545 -94660802 + MIR SINE MIR 76 262 0 409 254 209 6 chr4 107668019 107668196 -94660151 - MIR SINE MIR -18 244 32 1785 143 17 17 chr4 107668425 107668719 -94659628 - AluJo SINE Alu -18 294 1 23 0 0 0 chr4 107668781 107668804 -94659543 + AT_rich Low_complexity Low_complexity 1 23 0 2361 86 0 10 chr4 107669147 107669451 -94658896 - AluY SINE Alu -10 301 1 2035 85 41 34 chr4 107669463 107669756 -94658591 - AluY SINE Alu -16 295 1 7037 126 179 23 chr4 107669863 107671331 -94657016 - pTR5 LTR ERV1 0 2438 743 1131 96 30 91 chr4 107671539 107671769 -94656578 - L1MA5A LINE L1 -3 6294 6079 1840 204 85 35 chr4 107671955 107672471 -94655876 - MER34 LTR ERV1 0 542 1 365 256 46 51 chr4 107673027 107673222 -94655125 - MLT1L LTR MaLR -42 573 380 2303 173 59 2 chr4 107673222 107673644 -94654703 - MLT1C LTR MaLR 0 467 22 243 242 242 0 chr4 107673686 107673864 -94654483 - MLT1L LTR MaLR -231 384 164 227 281 113 35 chr4 107674130 107674361 -94653986 - L1ME4a LINE L1 -6 6115 5867 212 319 186 9 chr4 107674738 107674851 -94653496 + L2 LINE L2 3140 3272 0 343 261 30 64 chr4 107677270 107677473 -94650874 - LTR33 LTR ERVL -22 499 304 348 241 78 85 chr4 107677476 107677617 -94650730 + MER5C DNA MER1_type 21 160 -164 1140 148 22 0 chr4 107677627 107677809 -94650538 - AluSg/x SINE Alu -4 306 121 447 191 32 56 chr4 107677810 107677936 -94650411 + MER5C DNA MER1_type 198 320 -4 297 200 0 0 chr4 107678084 107678144 -94650203 - LTR33 LTR ERVL -431 90 31 572 275 12 0 chr4 107678245 107678412 -94649935 + LTR41 LTR ERVL 1 169 -604 1243 65 0 0 chr4 107678578 107678731 -94649616 - AluY SINE Alu -5 306 154 863 280 28 65 chr4 107680738 107681167 -94647180 + MLT1J LTR MaLR 26 438 -73 13976 145 21 9 chr4 107683741 107686129 -94642218 - Tigger1 DNA MER2_type -1 2417 1 244 269 0 13 chr4 107687078 107687098 -94641249 + (CA)n Simple_repeat Simple_repeat 2 21 -57 2377 69 0 0 chr4 107687098 107687386 -94640961 - AluSc SINE Alu -21 288 1 244 269 0 13 chr4 107687386 107687443 -94640904 + (CA)n Simple_repeat Simple_repeat 21 78 0 262 250 192 17 chr4 107688972 107689092 -94639255 + MIR3 SINE MIR 23 163 -45 198 390 0 0 chr4 107689090 107689167 -94639180 - L2 LINE L2 0 3313 3237 * 203 344 65 54 chr4 107689505 107689598 -94638749 - L2 LINE L2 -17 3255 3162 301 321 41 18 chr4 107689660 107689878 -94638469 - MARNA DNA Mariner -66 520 298 608 274 48 6 chr4 107689986 107690152 -94638195 - MIR SINE MIR -21 241 71 381 238 0 0 chr4 107691507 107691650 -94636697 + GA-rich Low_complexity Low_complexity 2 144 0 250 296 0 12 chr4 107691663 107691744 -94636603 + GA-rich Low_complexity Low_complexity 2 81 0 881 325 94 29 chr4 107691821 107692535 -94635812 + ERVL LTR ERVL 4055 4814 -950 1225 181 120 11 chr4 107692537 107692667 -94635680 + AluJo SINE Alu 1 115 -197 1922 91 14 22 chr4 107692667 107692942 -94635405 + AluY SINE Alu 36 308 -3 1225 181 120 11 chr4 107692942 107693087 -94635260 + AluJo SINE Alu 115 306 -6 29374 106 6 25 chr4 107693136 107699639 -94628708 + L1PA7 LINE L1 3 6469 0 781 330 35 24 chr4 107699641 107700186 -94628161 + ERVL LTR ERVL 4849 5399 -365 508 324 125 11 chr4 107700396 107700837 -94627510 + LTR33 LTR ERVL 8 498 -23 821 210 68 6 chr4 107702447 107702623 -94625724 - MIR SINE MIR -25 237 51 255 273 109 36 chr4 107702644 107702754 -94625593 + L2 LINE L2 3155 3272 0 24 0 0 0 chr4 107703072 107703096 -94625251 + AT_rich Low_complexity Low_complexity 1 24 0 2157 110 0 0 chr4 107703201 107703506 -94624841 - AluY SINE Alu 0 305 1 442 277 80 7 chr4 107703673 107703810 -94624537 - MIR SINE MIR -92 170 24 701 325 73 57 chr4 107704319 107704589 -94623758 + L2 LINE L2 2865 3146 -167 1077 207 40 0 chr4 107704589 107704816 -94623531 - L1PB4 LINE L1 -3 6153 5918 701 325 73 57 chr4 107704816 107704969 -94623378 + L2 LINE L2 3146 3295 -18 252 86 0 0 chr4 107706109 107706144 -94622203 + (TG)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr4 107706486 107706507 -94621840 + AT_rich Low_complexity Low_complexity 1 21 0 337 344 62 31 chr4 107707412 107707607 -94620740 + MIR SINE MIR 23 223 -39 14032 135 24 5 chr4 107708516 107710866 -94617481 + Tigger1 DNA MER2_type 1 2395 -23 2349 169 38 36 chr4 107712283 107712816 -94615531 + L1MA7 LINE L1 5748 6281 -10 326 270 189 7 chr4 107713327 107713475 -94614872 - MIR SINE MIR -55 207 33 360 324 84 6 chr4 107713789 107714144 -94614203 + L1ME LINE L1 4055 4437 -1709 348 261 251 57 chr4 107714191 107714525 -94613822 + L1ME LINE L1 4540 4938 -1208 427 231 72 66 chr4 107714532 107714696 -94613651 + L1ME LINE L1 5137 5299 -863 1681 172 38 123 chr4 107714696 107715226 -94613121 + MER31A LTR ERV1 1 485 0 427 231 72 66 chr4 107715226 107715549 -94612798 + L1ME LINE L1 5299 5625 -537 318 149 126 58 chr4 107715575 107715662 -94612685 + L1MC4 LINE L1 6612 6704 -1338 614 125 20 145 chr4 107716024 107716176 -94612171 - FLAM_C SINE Alu 0 133 1 251 411 50 5 chr4 107716957 107717176 -94611171 - MIR SINE MIR -11 251 23 417 210 12 0 chr4 107717444 107717525 -94610822 + FRAM SINE Alu 11 92 -84 27 29 0 0 chr4 107717534 107717568 -94610779 + AT_rich Low_complexity Low_complexity 1 34 0 884 233 44 31 chr4 107717711 107717939 -94610408 + MIR SINE MIR 2 232 -30 1701 177 13 16 chr4 107718115 107718420 -94609927 + AluJo SINE Alu 1 304 -8 825 316 126 40 chr4 107719077 107719650 -94608697 + HAL1 LINE L1 3 624 -1883 233 229 0 100 chr4 107719715 107719785 -94608562 + HAL1 LINE L1 766 828 -1679 271 295 0 0 chr4 107719952 107720013 -94608334 + L2 LINE L2 3249 3309 -4 3329 203 47 9 chr4 107720651 107721523 -94606824 - Zaphod DNA AcHobo -10 4021 3117 597 251 85 5 chr4 107721625 107721824 -94606523 - HAL1 LINE L1 -878 1629 1415 448 319 183 7 chr4 107721826 107722105 -94606242 + L2 LINE L2 2986 3313 0 375 329 92 4 chr4 107723087 107723327 -94605020 + MIR SINE MIR 2 262 0 337 286 12 0 chr4 107723654 107723738 -94604609 + MIR SINE MIR 63 147 -115 285 284 28 18 chr4 107724230 107724339 -94604008 + MIR SINE MIR 151 260 -2 21 82 0 0 chr4 107726747 107726796 -94601551 + AT_rich Low_complexity Low_complexity 1 49 0 343 373 17 18 chr4 107726798 107726980 -94601367 + MIR3 SINE MIR 31 174 -34 226 206 27 41 chr4 107727209 107727282 -94601065 + CT-rich Low_complexity Low_complexity 4 75 0 198 0 0 0 chr4 107727577 107727599 -94600748 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 231 167 0 37 chr4 107728852 107728906 -94599441 + L2 LINE L2 3262 3313 0 186 289 167 11 chr4 107728905 107728995 -94599352 + MIR SINE MIR 50 153 -55 * 803 294 61 0 chr4 107729266 107729494 -94598853 - MIR SINE MIR -20 242 1 198 150 0 0 chr4 107729697 107729737 -94598610 + (CA)n Simple_repeat Simple_repeat 1 40 0 309 328 104 79 chr4 107730553 107730956 -94597391 + L2 LINE L2 2856 3268 -4 604 202 32 0 chr4 107731362 107731486 -94596861 - MIR SINE MIR -11 251 124 834 296 78 0 chr4 107731568 107731811 -94596536 + MIR SINE MIR 1 262 0 298 341 125 17 chr4 107731868 107732044 -94596303 + MIR3 SINE MIR 9 203 -5 469 177 282 0 chr4 107732496 107732620 -94595727 - MIR SINE MIR -25 237 79 867 237 109 5 chr4 107733192 107733403 -94594944 - MIR SINE MIR -29 233 1 885 230 60 25 chr4 107733647 107733882 -94594465 + MIR SINE MIR 19 261 -1 1304 270 78 56 chr4 107734020 107734071 -94594276 + L2 LINE L2 2153 2201 -1112 1803 165 7 0 chr4 107734071 107734368 -94593979 - AluJo SINE Alu -13 299 1 1304 270 78 56 chr4 107734368 107735453 -94592894 + L2 LINE L2 2201 3313 0 2748 110 0 0 chr4 107738296 107738660 -94589687 + THE1B LTR MaLR 1 364 0 2802 25 0 0 chr4 107739235 107739558 -94588789 + L1PA4 LINE L1 5827 6149 -6 506 384 62 30 chr4 107739701 107740462 -94587885 - L2 LINE L2 -1694 1620 836 21 57 0 0 chr4 107740722 107740757 -94587590 + AT_rich Low_complexity Low_complexity 1 35 0 1719 167 40 35 chr4 107741148 107741520 -94586827 + MLT1A2 LTR MaLR 1 374 0 181 296 9 104 chr4 107742128 107742243 -94586104 + MIR3 SINE MIR 103 206 -2 665 291 29 16 chr4 107742266 107742510 -94585837 - MER112 DNA MER1_type -11 249 3 1475 127 154 61 chr4 107743770 107744100 -94584247 + MER31B LTR ERV1 1 361 -105 1567 185 121 62 chr4 107744129 107744582 -94583765 + MLT2B1 LTR ERVL 1 480 -40 605 236 3 0 chr4 107744582 107744933 -94583414 + (TA)n Simple_repeat Simple_repeat 1 352 0 285 157 0 63 chr4 107744952 107745143 -94583204 + (TA)n Simple_repeat Simple_repeat 1 179 0 342 102 0 0 chr4 107745195 107745244 -94583103 + MLT2B1 LTR ERVL 465 513 -7 1683 148 19 30 chr4 107745717 107746059 -94582288 + MER61B LTR ERV1 1 425 0 579 271 26 36 chr4 107746636 107746828 -94581519 + MLT1K LTR MaLR 399 588 0 181 300 0 0 chr4 107747282 107747332 -94581015 - MIR SINE MIR -114 94 45 259 362 183 27 chr4 107747625 107747849 -94580498 - L2 LINE L2 0 3272 3014 779 144 23 0 chr4 107748384 107748516 -94579831 + L1PB4 LINE L1 6021 6155 -1 2242 108 0 0 chr4 107748520 107748817 -94579530 + AluSc SINE Alu 1 297 -12 249 184 20 0 chr4 107749008 107749057 -94579290 - L2 LINE L2 0 3313 3264 282 143 0 0 chr4 107749566 107749615 -94578732 + (TA)n Simple_repeat Simple_repeat 1 49 0 321 207 0 0 chr4 107749878 107749960 -94578387 + (CA)n Simple_repeat Simple_repeat 2 83 0 401 206 19 9 chr4 107750132 107750239 -94578108 + L1ME4a LINE L1 5992 6099 -22 2457 60 0 0 chr4 107750787 107751087 -94577260 + AluY SINE Alu 1 300 -11 853 179 22 0 chr4 107751087 107751266 -94577081 + Charlie1 DNA MER1_type 2575 2757 -4 1627 157 86 8 chr4 107751507 107751775 -94576572 + AluJb SINE Alu 1 289 -23 488 293 7 0 chr4 107752702 107752842 -94575505 + L2 LINE L2 1807 1947 -1367 389 314 24 118 chr4 107753094 107753251 -94575096 - L2 LINE L2 -1 3271 3101 2384 67 0 10 chr4 107753251 107753551 -94574796 + AluY SINE Alu 1 297 -14 389 314 24 118 chr4 107753551 107753775 -94574572 - L2 LINE L2 -171 3101 2926 2169 130 0 0 chr4 107753848 107754149 -94574198 + AluSx SINE Alu 1 301 -11 18657 96 7 8 chr4 107754161 107757684 -94570663 + L1PA7 LINE L1 2612 6151 -3 386 317 35 0 chr4 107757795 107757937 -94570410 - MIR SINE MIR -16 246 100 600 323 84 45 chr4 107757959 107758647 -94569700 - L2 LINE L2 -798 2516 1802 460 335 63 8 chr4 107759255 107759494 -94568853 + MIR SINE MIR 11 262 0 230 266 47 0 chr4 107760519 107760583 -94567764 - MIR SINE MIR -1 261 195 212 303 13 40 chr4 107760646 107760722 -94567625 + MIR SINE MIR 189 262 0 * 482 319 17 62 chr4 107760676 107760917 -94567430 - MIR SINE MIR -30 232 3 2478 73 0 0 chr4 107762693 107762996 -94565351 - AluY SINE Alu -8 303 1 751 262 78 0 chr4 107763231 107763437 -94564910 + MIR SINE MIR 41 262 0 1012 39 78 0 chr4 107764460 107764588 -94563759 - MER85 DNA T2_type -1 138 1 251 297 0 31 chr4 107764620 107764684 -94563663 + L2 LINE L2 3112 3173 -99 212 292 15 15 chr4 107764719 107764784 -94563563 - L2 LINE L2 -3 3269 3205 227 333 121 20 chr4 107764944 107765043 -94563304 - L2 LINE L2 -156 3116 3008 322 305 106 20 chr4 107765102 107765253 -94563094 - L2 LINE L2 -462 2852 2689 2139 107 10 0 chr4 107766789 107767078 -94561269 + AluSp SINE Alu 1 292 -21 206 222 0 0 chr4 107769920 107770007 -94558340 + (TCTG)n Simple_repeat Simple_repeat 1 87 0 500 172 0 10 chr4 107770676 107770775 -94557572 + MER4A LTR ERV1 1 98 -566 2702 90 2 24 chr4 107770775 107771187 -94557160 + MER4A LTR ERV1 261 663 -1 505 273 165 57 chr4 107771264 107771689 -94556658 + L3 LINE CR1 1093 1563 -14 2005 147 3 0 chr4 107772026 107772318 -94556029 + AluSx SINE Alu 1 293 -19 677 156 25 8 chr4 107772605 107772727 -94555620 + Tigger4(Zombi) DNA MER2_type 1 124 -2607 * 1158 114 5 10 chr4 107772721 107772914 -94555433 + Tigger4(Zombi) DNA MER2_type 2523 2714 -17 186 43 0 0 chr4 107772935 107772958 -94555389 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1569 164 40 43 chr4 107772958 107773262 -94555085 - 7SLRNA srpRNA srpRNA -17 303 1 24 53 0 0 chr4 107773323 107773361 -94554986 + AT_rich Low_complexity Low_complexity 1 38 0 240 326 11 11 chr4 107773476 107773568 -94554779 + MIR3 SINE MIR 91 182 -26 1483 228 25 23 chr4 107774508 107774677 -94553670 + L1MC4a LINE L1 6442 6609 -1199 243 0 0 0 chr4 107774677 107774704 -94553643 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 576 0 0 0 chr4 107774703 107774767 -94553580 + (GA)n Simple_repeat Simple_repeat 2 65 0 1483 228 25 23 chr4 107774704 107774991 -94553356 + L1MC4a LINE L1 6609 6836 -972 180 314 76 51 chr4 107775439 107775557 -94552790 - L2 LINE L2 -236 3036 2916 272 245 19 85 chr4 107775897 107776003 -94552344 + MIR SINE MIR 108 206 -56 204 404 9 0 chr4 107776194 107776303 -94552044 - MIR3 SINE MIR -21 187 78 2339 92 0 3 chr4 107776874 107777168 -94551179 - AluSx SINE Alu -19 293 1 209 184 26 0 chr4 107777760 107777798 -94550549 + CT-rich Low_complexity Low_complexity 5 43 0 21 57 0 0 chr4 107780078 107780113 -94548234 + AT_rich Low_complexity Low_complexity 1 35 0 302 259 49 0 chr4 107781665 107781746 -94546601 + MIR SINE MIR 167 251 -11 1712 192 3 16 chr4 107781896 107782204 -94546143 + AluJo SINE Alu 1 304 -8 276 149 0 0 chr4 107782218 107782265 -94546082 + (GGAA)n Simple_repeat Simple_repeat 4 50 0 761 148 30 12 chr4 107782297 107782466 -94545881 + GA-rich Low_complexity Low_complexity 1 172 0 665 269 116 59 chr4 107782470 107782794 -94545553 + L2 LINE L2 1391 1746 -1568 2076 163 53 31 chr4 107782794 107783249 -94545098 + MLT1C LTR MaLR 1 465 -2 665 269 116 59 chr4 107783249 107783348 -94544999 + L2 LINE L2 1746 1838 -1476 359 314 32 39 chr4 107783348 107783504 -94544843 + L2 LINE L2 1740 1894 -1420 532 304 116 40 chr4 107785247 107785507 -94542840 + L2 LINE L2 1929 2228 -1086 2047 133 67 29 chr4 107785507 107785883 -94542464 + MLT1B LTR MaLR 1 390 0 532 304 116 40 chr4 107785883 107786000 -94542347 + L2 LINE L2 2228 2335 -979 555 275 39 83 chr4 107786194 107786532 -94541815 + LTR16C LTR ERVL 167 489 -2 361 359 81 40 chr4 107786532 107787139 -94541208 + L2 LINE L2 2455 3089 -183 182 322 51 0 chr4 107787229 107787288 -94541059 + L2 LINE L2 3252 3313 0 22 56 0 0 chr4 107787295 107787331 -94541016 + AT_rich Low_complexity Low_complexity 1 36 0 298 275 88 0 chr4 107788524 107788604 -94539743 - L2 LINE L2 -1 3312 3226 1284 113 33 0 chr4 107788610 107788823 -94539524 + L1MA2 LINE L1 6000 6219 -85 2652 179 46 36 chr4 107789131 107789763 -94538584 + L1MC2 LINE L1 5704 6341 -3 10476 152 33 43 chr4 107789833 107790042 -94538305 - Ricksha_c DNA DNA -1221 2033 1823 1648 158 48 4 chr4 107790042 107790315 -94538032 - AluSx SINE Alu -27 285 1 10476 152 33 43 chr4 107790315 107790486 -94537861 - Ricksha_c DNA DNA -1431 1823 1652 2189 101 3 0 chr4 107790486 107790772 -94537575 + AluSx SINE Alu 1 287 -25 207 100 0 0 chr4 107790772 107790802 -94537545 + (CAGA)n Simple_repeat Simple_repeat 4 33 0 10476 152 33 43 chr4 107790802 107790825 -94537522 - Ricksha_c DNA DNA -1601 1653 1631 6759 170 3 11 chr4 107790825 107792939 -94535408 + L1PA14 LINE L1 4041 6152 -9 10476 152 33 43 chr4 107792939 107793061 -94535286 - Ricksha_c DNA DNA -1623 1631 1509 2379 97 0 0 chr4 107793061 107793360 -94534987 - AluSg SINE Alu -11 299 1 10476 152 33 43 chr4 107793360 107794384 -94533963 - Ricksha_c DNA DNA -1745 1509 566 1978 121 38 3 chr4 107794384 107794674 -94533673 + AluSx SINE Alu 1 300 -12 10476 152 33 43 chr4 107794674 107795210 -94533137 - Ricksha_c DNA DNA -2688 566 26 231 36 0 0 chr4 107795355 107795383 -94532964 + (CA)n Simple_repeat Simple_repeat 1 28 0 855 226 21 45 chr4 107795492 107795779 -94532568 - L1ME1 LINE L1 -281 5885 5606 194 33 67 0 chr4 107795780 107795810 -94532537 + T-rich Low_complexity Low_complexity 1 32 0 13360 89 14 18 chr4 107795811 107796544 -94531803 - L1PA8 LINE L1 -25 6147 5413 186 71 0 0 chr4 107796544 107796572 -94531775 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2137 103 0 7 chr4 107796572 107796854 -94531493 - AluY SINE Alu -31 280 1 13360 89 14 18 chr4 107796854 107798048 -94530299 - L1PA8 LINE L1 -758 5414 4231 2122 119 3 0 chr4 107798048 107798343 -94530004 - AluSp SINE Alu -17 296 1 13360 89 14 18 chr4 107798343 107799324 -94529023 - L1PA8 LINE L1 -1941 4231 3248 * 41818 45 1 4 chr4 107799307 107805477 -94522870 - L1PA4 LINE L1 0 6155 2 13973 147 20 104 chr4 107805474 107805963 -94522384 - L1PA8 LINE L1 -2879 3267 2738 * 2227 132 0 0 chr4 107805963 107806273 -94522074 - AluSg SINE Alu 0 310 1 13973 147 20 104 chr4 107806273 107809351 -94518996 - L1PA8 LINE L1 -3408 2738 2 265 361 76 6 chr4 107813223 107813381 -94514966 + L3 LINE CR1 1407 1575 -2 4451 194 40 25 chr4 107813817 107815886 -94512461 + L1MB7 LINE L1 4067 6165 -19 965 170 259 8 chr4 107815977 107816236 -94512111 - MER5C DNA MER1_type 0 324 1 1408 234 89 27 chr4 107817797 107818315 -94510032 + L1MC5 LINE L1 6963 7512 -449 1395 142 9 5 chr4 107818398 107818610 -94509737 + AluJb SINE Alu 85 297 -15 2947 67 20 0 chr4 107818833 107819223 -94509124 + MLT2A1 LTR ERVL 3 400 -44 16767 67 3 5 chr4 107819234 107821450 -94506897 + HERVL LTR ERVL 3358 5569 -85 7236 56 7 8 chr4 107821582 107822608 -94505739 - L1P LINE L1 -1449 4697 3673 2101 128 7 0 chr4 107823527 107823824 -94504523 - AluSx SINE Alu -13 299 1 2163 106 17 3 chr4 107824268 107824561 -94503786 - AluSq SINE Alu -16 297 1 42 0 0 0 chr4 107824563 107824605 -94503742 + AT_rich Low_complexity Low_complexity 1 42 0 220 316 127 85 chr4 107826022 107826433 -94501914 - L2 LINE L2 0 3272 2845 1725 133 49 14 chr4 107828271 107828557 -94499790 + AluSq SINE Alu 2 297 -16 1875 135 14 10 chr4 107829034 107829330 -94499017 + AluSp SINE Alu 1 297 -16 1157 335 112 25 chr4 107830155 107830432 -94497915 - L2 LINE L2 -9 3263 3012 1410 164 119 4 chr4 107830432 107830700 -94497647 - AluJb SINE Alu -13 299 1 1157 335 112 25 chr4 107830700 107831561 -94496786 - L2 LINE L2 -260 3012 2025 3612 118 74 32 chr4 107831691 107832563 -94495784 - MER11A LTR ERVK 0 1266 219 2247 104 0 0 chr4 107833166 107833463 -94494884 + AluSx SINE Alu 7 303 -9 1303 81 0 0 chr4 107833463 107833624 -94494723 + AluSg/x SINE Alu 134 294 -18 2001 122 0 0 chr4 107834061 107834367 -94493980 + AluSx SINE Alu 13 318 0 2972 116 17 77 chr4 107834375 107834753 -94493594 + L1MB2 LINE L1 5591 5923 -248 2046 159 0 6 chr4 107834753 107835067 -94493280 + AluJb SINE Alu 1 312 0 2972 116 17 77 chr4 107835067 107835276 -94493071 + L1MB2 LINE L1 5923 6143 -28 394 262 117 21 chr4 107836602 107836747 -94491600 - MIR SINE MIR -12 250 92 862 129 0 0 chr4 107837282 107837406 -94490941 + AluSq/x SINE Alu 1 124 -188 1200 141 73 0 chr4 107837411 107837659 -94490688 + L1MCa LINE L1 977 1242 -5184 2442 131 14 52 chr4 107837659 107838290 -94490057 - MER4B LTR ERV1 0 779 1 2118 141 53 13 chr4 107838291 107838880 -94489467 + L1MCa LINE L1 1240 1939 -4487 812 190 0 0 chr4 107838885 107839022 -94489325 + FLAM_C SINE Alu 6 142 -1 681 188 267 0 chr4 107839043 107839245 -94489102 + L1MCa LINE L1 1927 2182 -4244 2050 128 14 0 chr4 107839247 107839543 -94488804 + AluSq SINE Alu 2 301 -12 219 69 0 0 chr4 107839576 107839605 -94488742 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1768 163 20 24 chr4 107839616 107839910 -94488437 + AluJb SINE Alu 1 293 -19 27 0 0 0 chr4 107839910 107839937 -94488410 + AT_rich Low_complexity Low_complexity 1 27 0 480 194 0 0 chr4 107839944 107840047 -94488300 + L1 LINE L1 4553 4655 -1491 2310 99 3 0 chr4 107840048 107840341 -94488006 + AluSp SINE Alu 1 294 -19 1455 171 19 4 chr4 107840344 107840601 -94487746 + AluSx SINE Alu 1 261 -51 1989 133 7 14 chr4 107840733 107841027 -94487320 + AluSg SINE Alu 1 292 -18 295 280 129 11 chr4 107841551 107841644 -94486703 + MIR SINE MIR 47 150 -112 256 239 0 0 chr4 107842337 107842404 -94485943 - L1MC4 LINE L1 0 8042 7976 259 166 325 30 chr4 107842414 107842563 -94485784 - L1MC4a LINE L1 -266 7542 7473 1053 278 133 11 chr4 107842586 107842830 -94485517 - L1MC4 LINE L1 -1091 6951 6738 207 0 0 0 chr4 107842830 107842853 -94485494 + (TG)n Simple_repeat Simple_repeat 2 24 0 1053 278 133 11 chr4 107842853 107843044 -94485303 - L1MC4 LINE L1 -1304 6738 6463 1340 332 103 38 chr4 107843123 107844517 -94483830 + L2 LINE L2 1780 3268 -4 261 57 0 0 chr4 107844935 107844970 -94483377 + (CA)n Simple_repeat Simple_repeat 1 35 0 333 0 0 0 chr4 107845026 107845063 -94483284 + (CA)n Simple_repeat Simple_repeat 2 38 0 527 277 24 19 chr4 107845420 107845633 -94482714 + HAL1 LINE L1 2285 2498 -9 2304 102 3 0 chr4 107845713 107846006 -94482341 + AluSx SINE Alu 1 294 -18 300 111 0 0 chr4 107846006 107846051 -94482296 + (TA)n Simple_repeat Simple_repeat 2 46 0 24 67 0 0 chr4 107846160 107846205 -94482142 + AT_rich Low_complexity Low_complexity 1 45 0 31 44 0 0 chr4 107847413 107847458 -94480889 + AT_rich Low_complexity Low_complexity 1 45 0 563 296 94 80 chr4 107847905 107848144 -94480203 - L2 LINE L2 -4 3268 3034 1798 161 30 10 chr4 107848144 107848449 -94479898 - AluJo SINE Alu -1 311 1 563 296 94 80 chr4 107848449 107848781 -94479566 - L2 LINE L2 -238 3034 2690 897 187 79 51 chr4 107849877 107849954 -94478393 + MER58A DNA MER1_type 5 78 -2342 1140 218 140 36 chr4 107849954 107850289 -94478058 + MLT1A2 LTR MaLR 1 370 -4 897 187 79 51 chr4 107850289 107850425 -94477922 + MER58A DNA MER1_type 78 224 0 468 342 16 21 chr4 107850427 107850620 -94477727 - L3 LINE CR1 -81 1496 1305 201 246 275 7 chr4 107852206 107852348 -94475999 - MIR3 SINE MIR -7 201 22 1728 186 7 0 chr4 107852586 107852882 -94475465 + AluJo SINE Alu 1 298 -14 7774 16 2 0 chr4 107853996 107855680 -94472667 - L1PA3 LINE L1 0 6155 4471 2383 91 3 0 chr4 107855776 107856085 -94472262 + AluY SINE Alu 1 310 -1 431 309 58 10 chr4 107856132 107856443 -94471904 - L1ME4a LINE L1 -277 5844 5519 804 118 8 0 chr4 107856602 107856721 -94471626 - AluSx SINE Alu -5 307 188 653 148 0 0 chr4 107856721 107856822 -94471525 - AluSx SINE Alu -204 108 8 494 258 120 21 chr4 107857258 107857541 -94470806 - L1ME4a LINE L1 -28 6093 5783 22 35 0 0 chr4 107857565 107857594 -94470753 + AT_rich Low_complexity Low_complexity 1 29 0 184 302 32 0 chr4 107859341 107859404 -94468943 + L2 LINE L2 2345 2409 -905 597 196 19 113 chr4 107859556 107859700 -94468647 - L1MC5 LINE L1 -52 7909 7800 1962 162 0 0 chr4 107859700 107859996 -94468351 - AluJo SINE Alu -15 297 2 597 196 19 113 chr4 107859996 107860117 -94468230 - L1MC5 LINE L1 -161 7800 7669 23 33 0 0 chr4 107860287 107860317 -94468030 + AT_rich Low_complexity Low_complexity 1 30 0 437 330 115 5 chr4 107860833 107861024 -94467323 - MIR SINE MIR -10 252 41 2383 83 0 3 chr4 107861699 107861999 -94466348 - AluSq SINE Alu -14 299 1 600 267 51 36 chr4 107862003 107862198 -94466149 - MIR SINE MIR -55 207 10 233 264 142 24 chr4 107862267 107862479 -94465868 + L1MEd LINE L1 895 1131 -4988 1187 146 199 0 chr4 107862534 107862821 -94465526 - Tigger7 DNA MER2_type -1 2486 2143 651 167 23 2 chr4 107862819 107863039 -94465308 + Tigger7 DNA MER2_type 76 346 -204 * 274 311 0 0 chr4 107863039 107863113 -94465234 - Tigger7 DNA MER2_type -656 77 4 1864 184 5 16 chr4 107863113 107863227 -94465120 + MER47A DNA MER2_type 1 115 -2208 1800 162 29 19 chr4 107863227 107863536 -94464811 - AluJo SINE Alu 0 312 1 1864 184 5 16 chr4 107863536 107863791 -94464556 + MER47A DNA MER2_type 115 366 0 316 227 45 0 chr4 107863839 107863927 -94464420 + LTR41 LTR ERVL 91 182 -591 509 249 23 6 chr4 107864249 107864426 -94463921 + L1MD3 LINE L1 7815 7994 -1 1639 159 10 42 chr4 107864607 107864896 -94463451 + AluJb SINE Alu 1 280 -32 287 246 49 16 chr4 107864915 107865037 -94463310 + L1MEd LINE L1 2130 2255 -3874 187 250 0 36 chr4 107865040 107865096 -94463251 + L2 LINE L2 3205 3258 -55 1243 198 195 2 chr4 107865099 107865509 -94462838 + Charlie5 DNA MER1_type 1 489 -2123 1740 129 82 4 chr4 107865509 107865788 -94462559 + AluSx SINE Alu 1 301 -11 1762 152 0 52 chr4 107866296 107866624 -94461723 + AluYa5 SINE Alu 1 311 0 1647 191 24 13 chr4 107866631 107867014 -94461333 + L1PA16 LINE L1 4659 5045 -1101 775 142 8 16 chr4 107867014 107867141 -94461206 + FLAM_C SINE Alu 1 126 -17 5129 143 14 24 chr4 107867144 107867898 -94460449 + L1PA16 LINE L1 5039 5778 -388 1855 156 0 26 chr4 107867898 107868200 -94460147 + AluJb SINE Alu 1 294 -18 5129 143 14 24 chr4 107868200 107868568 -94459779 + L1PA16 LINE L1 5778 6148 -18 4654 193 51 6 chr4 107868687 107870023 -94458324 + L1MA6 LINE L1 4903 6295 -5 1798 164 3 33 chr4 107870334 107870638 -94457709 - AluJb SINE Alu -17 295 1 25 0 0 68 chr4 107870828 107870872 -94457475 + AT_rich Low_complexity Low_complexity 1 41 0 2359 82 20 0 chr4 107871429 107871735 -94456612 + AluSq SINE Alu 1 312 -1 1668 167 82 50 chr4 107872463 107872840 -94455507 - MLT1B LTR MaLR 0 390 2 722 215 184 140 chr4 107872874 107873301 -94455046 + MLT1F1 LTR MaLR 52 505 -62 1622 73 23 0 chr4 107873301 107873521 -94454826 - L1PA13 LINE L1 0 6163 5939 722 215 184 140 chr4 107873521 107873587 -94454760 + MLT1F1 LTR MaLR 505 567 0 2205 107 3 0 chr4 107873836 107874126 -94454221 + AluSx SINE Alu 1 291 -21 323 323 257 3 chr4 107874704 107875042 -94453305 + L2 LINE L2 2111 2534 -780 791 217 0 42 chr4 107875072 107875238 -94453109 + FAM SINE Alu 1 159 -16 326 261 59 8 chr4 107875510 107875629 -94452718 + MER114 LTR ERV 20 144 -504 720 230 112 40 chr4 107875683 107875979 -94452368 + MER114 LTR ERV 331 647 -1 638 206 53 15 chr4 107876141 107876272 -94452075 - FAM SINE Alu -45 140 5 576 144 21 0 chr4 107876558 107876655 -94451692 - BC200 scRNA scRNA -63 137 39 1799 146 38 0 chr4 107876740 107877027 -94451320 - AluSx SINE Alu -12 300 3 1421 174 57 18 chr4 107877068 107877349 -94450998 - AluJo SINE Alu -9 303 12 1345 69 173 10 chr4 107877809 107878011 -94450336 + AluY SINE Alu 60 294 -17 21 0 0 0 chr4 107878038 107878059 -94450288 + AT_rich Low_complexity Low_complexity 1 21 0 2928 89 25 0 chr4 107878553 107878945 -94449402 + MLT2A1 LTR ERVL 41 442 -2 2067 129 0 0 chr4 107878970 107879250 -94449097 + AluSc SINE Alu 1 280 -29 1805 249 75 18 chr4 107879594 107880157 -94448190 + L1ME2 LINE L1 5551 6145 -19 1943 135 24 0 chr4 107880180 107880469 -94447878 + AluJb SINE Alu 1 296 -16 245 240 80 10 chr4 107880617 107880717 -94447630 + L1MC4a LINE L1 7702 7808 0 567 339 54 17 chr4 107880734 107881181 -94447166 + L2 LINE L2 2709 3171 -142 472 282 69 75 chr4 107881288 107881650 -94446697 + HAL1 LINE L1 903 1262 -1245 450 332 101 12 chr4 107881715 107882456 -94445891 + L1ME LINE L1 4498 5304 -842 242 340 81 25 chr4 107882468 107882665 -94445682 + L1ME LINE L1 5377 5584 -537 232 280 60 20 chr4 107882683 107882783 -94445564 + L1ME LINE L1 5683 5786 -376 1082 239 31 24 chr4 107882948 107883241 -94445106 - Zaphod DNA AcHobo 0 4031 3737 * 1638 273 109 2 chr4 107883238 107883743 -94444604 - Zaphod DNA AcHobo -3443 588 30 222 37 0 0 chr4 107883844 107883871 -94444476 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 230 91 0 0 chr4 107884012 107884045 -94444302 + tRNA-Arg-AGA tRNA tRNA 2 34 -42 351 0 0 0 chr4 107884273 107884312 -94444035 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2078 117 0 0 chr4 107884315 107884598 -94443749 - AluSx SINE Alu -29 283 1 2243 122 0 0 chr4 107885604 107885916 -94442431 + AluSp SINE Alu 1 312 -1 1835 158 39 99 chr4 107886140 107886576 -94441771 - MLT2D LTR ERVL -4 410 1 323 225 139 47 chr4 107886710 107886839 -94441508 + MIR SINE MIR 122 262 0 272 27 27 0 chr4 107887129 107887166 -94441181 + (CA)n Simple_repeat Simple_repeat 2 39 0 424 273 57 8 chr4 107888912 107889066 -94439281 + MIR SINE MIR 17 172 -36 230 289 92 0 chr4 107889119 107889195 -94439152 - MIR SINE MIR -101 161 79 3147 104 22 2 chr4 107889219 107889679 -94438668 + L1PB2 LINE L1 5681 6149 -2 243 233 35 0 chr4 107889715 107889801 -94438546 - L1MC4 LINE L1 -1339 6703 6615 256 223 0 53 chr4 107890031 107890125 -94438222 + L1MC4 LINE L1 6615 6703 -1339 708 222 0 0 chr4 107890147 107890327 -94438020 + (TA)n Simple_repeat Simple_repeat 1 180 0 531 268 0 0 chr4 107890340 107890613 -94437734 + (TA)n Simple_repeat Simple_repeat 1 273 0 227 267 0 47 chr4 107890616 107890702 -94437645 - L1MC4 LINE L1 -1347 6695 6614 536 264 4 0 chr4 107890703 107890966 -94437381 + (TA)n Simple_repeat Simple_repeat 1 264 0 447 250 0 0 chr4 107891053 107891185 -94437162 + (TA)n Simple_repeat Simple_repeat 1 132 0 232 308 0 22 chr4 107891186 107891277 -94437070 + L1MC4 LINE L1 6614 6702 -1340 * 245 183 0 13 chr4 107891267 107891344 -94437003 - L1MCa LINE L1 -1341 6981 2006 196 167 33 33 chr4 107891372 107891492 -94436855 + (TA)n Simple_repeat Simple_repeat 1 120 0 264 276 157 15 chr4 107892462 107892596 -94435751 - L2 LINE L2 0 3313 3161 1430 204 35 84 chr4 107892690 107892839 -94435508 + L1ME1 LINE L1 5723 5878 -288 1597 188 32 0 chr4 107892839 107893121 -94435226 + AluJb SINE Alu 2 292 -20 1430 204 35 84 chr4 107893121 107893433 -94434914 + L1ME1 LINE L1 5878 6161 -5 22 0 0 0 chr4 107893792 107893814 -94434533 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr4 107894345 107894373 -94433974 + (CA)n Simple_repeat Simple_repeat 2 29 0 191 170 21 0 chr4 107894651 107894698 -94433649 + CT-rich Low_complexity Low_complexity 2 49 0 207 209 0 0 chr4 107894850 107894893 -94433454 + (TAA)n Simple_repeat Simple_repeat 2 44 0 414 308 47 35 chr4 107894933 107895102 -94433245 - MIR SINE MIR -72 190 20 4485 59 19 2 chr4 107895278 107895854 -94432493 + L1PA5 LINE L1 5563 6148 -6 196 51 26 26 chr4 107895895 107895934 -94432413 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 2095 126 64 14 chr4 107895967 107896324 -94432023 - THE1C LTR MaLR 0 375 1 194 299 19 96 chr4 107896467 107896624 -94431723 - MIR SINE MIR -50 212 68 24 0 0 0 chr4 107897365 107897389 -94430958 + AT_rich Low_complexity Low_complexity 1 24 0 625 276 79 22 chr4 107897407 107897635 -94430712 - MIR SINE MIR -14 248 8 1620 160 91 22 chr4 107897711 107898073 -94430274 + MLT1B LTR MaLR 1 387 -3 438 293 48 84 chr4 107898378 107898521 -94429826 + MIR SINE MIR 9 141 -121 1400 186 19 62 chr4 107898521 107898844 -94429503 + AluJo SINE Alu 1 309 -3 438 293 48 84 chr4 107898844 107898949 -94429398 + MIR SINE MIR 141 248 -14 261 338 52 66 chr4 107899035 107899171 -94429176 - L2 LINE L2 -221 3051 2918 533 306 107 15 chr4 107899265 107899592 -94428755 - MLT1J LTR MaLR -31 419 63 2379 94 0 0 chr4 107900116 107900425 -94427922 + AluSc SINE Alu 1 309 0 21 36 0 0 chr4 107900683 107900711 -94427636 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 107900831 107900855 -94427492 + AT_rich Low_complexity Low_complexity 1 24 0 411 259 130 31 chr4 107900886 107901048 -94427299 + MER5B DNA MER1_type 1 178 0 462 232 152 0 chr4 107901048 107901160 -94427187 + L2 LINE L2 3144 3272 0 405 86 0 0 chr4 107901164 107901222 -94427125 + (TGGA)n Simple_repeat Simple_repeat 2 59 0 421 356 88 56 chr4 107902910 107903183 -94425164 + L2 LINE L2 2507 2770 -502 1957 130 37 3 chr4 107903183 107903483 -94424864 + AluSx SINE Alu 1 310 -2 421 356 88 56 chr4 107903483 107903951 -94424396 + L2 LINE L2 2770 3268 -4 256 379 54 49 chr4 107904208 107904411 -94423936 + L2 LINE L2 3057 3260 -12 1058 230 171 29 chr4 107904917 107905291 -94423056 + MLT1G LTR MaLR 20 446 -144 1840 137 2 117 chr4 107905819 107906220 -94422127 + MLT1A1 LTR MaLR 1 355 -10 1485 198 95 43 chr4 107906851 107907177 -94421170 - L1MB7 LINE L1 -10 6174 5815 2105 110 6 28 chr4 107907177 107907495 -94420852 - AluSx SINE Alu 0 312 2 1485 198 95 43 chr4 107907495 107907633 -94420714 - L1MB7 LINE L1 -369 5815 5686 510 285 188 7 chr4 107909008 107909296 -94419051 - L2 LINE L2 -777 2537 2198 332 266 92 9 chr4 107909298 107909407 -94418940 + MIR SINE MIR 69 186 -76 194 307 119 50 chr4 107910090 107910393 -94417954 - L2 LINE L2 -1607 1707 1384 1041 74 0 0 chr4 107910398 107910533 -94417814 + AluSc SINE Alu 172 306 -3 180 0 0 0 chr4 107910872 107910892 -94417455 + (TTATA)n Simple_repeat Simple_repeat 5 24 0 2412 39 13 35 chr4 107911637 107911949 -94416398 + AluY SINE Alu 1 305 -6 23 33 0 0 chr4 107913213 107913243 -94415104 + AT_rich Low_complexity Low_complexity 1 30 0 11416 154 34 33 chr4 107913670 107915896 -94412451 + L1MA9 LINE L1 2860 5081 -1231 2264 89 7 7 chr4 107915896 107916189 -94412158 + AluSq SINE Alu 1 293 -20 11416 154 34 33 chr4 107916189 107916546 -94411801 + L1MA9 LINE L1 5081 5436 -876 2349 91 3 0 chr4 107916546 107916853 -94411494 + AluSg SINE Alu 1 308 -2 11416 154 34 33 chr4 107916853 107917715 -94410632 + L1MA9 LINE L1 5436 6310 -2 1868 149 0 7 chr4 107918040 107918322 -94410025 + AluJb SINE Alu 2 281 -31 1886 149 157 5 chr4 107918549 107918918 -94409429 + MSTB LTR MaLR 2 426 0 21 0 0 0 chr4 107919288 107919309 -94409038 + AT_rich Low_complexity Low_complexity 1 21 0 183 250 0 0 chr4 107920139 107920207 -94408140 + GA-rich Low_complexity Low_complexity 3 70 0 484 307 36 7 chr4 107921871 107922011 -94406336 - L2 LINE L2 -4 3268 3125 476 282 29 29 chr4 107922045 107922254 -94406093 - MLT1K LTR MaLR -6 582 374 300 285 102 7 chr4 107922358 107922495 -94405852 + LTR16C LTR ERVL 341 490 -1 370 259 125 0 chr4 107922805 107922917 -94405430 - MER63 DNA MER1_type -84 752 1 1072 230 78 68 chr4 107923456 107924028 -94404319 + LTR48B LTR ERV1 1 622 0 1205 150 69 64 chr4 107924469 107924840 -94403507 - MER31B LTR ERV1 -12 454 3 853 228 15 108 chr4 107925806 107926074 -94402273 - MIR SINE MIR -1 261 19 887 162 0 7 chr4 107926107 107926243 -94402104 + AluJo SINE Alu 1 135 -177 784 245 48 48 chr4 107926994 107927243 -94401104 + MIR SINE MIR 14 262 0 256 284 121 43 chr4 107927314 107927455 -94400892 - L2 LINE L2 -1 3312 3161 258 32 0 0 chr4 107927514 107927545 -94400802 + (A)n Simple_repeat Simple_repeat 1 31 0 1952 100 0 8 chr4 107928377 107928638 -94399709 + AluSq SINE Alu 38 296 -17 637 234 149 0 chr4 107928879 107929033 -94399314 - MER5A DNA MER1_type -3 186 10 266 273 91 50 chr4 107929131 107929220 -94399127 - L2 LINE L2 -1 3312 3217 1858 142 0 4 chr4 107929220 107929495 -94398852 + AluJb SINE Alu 39 312 0 2261 107 0 0 chr4 107929664 107929955 -94398392 - AluSg SINE Alu -19 291 1 5899 100 34 14 chr4 107930754 107931921 -94396426 + L1PA15 LINE L1 4972 6160 -5 2537 64 0 0 chr4 107932129 107932440 -94395907 - AluYa5 SINE Alu 0 311 1 218 303 0 15 chr4 107933250 107933316 -94395031 - MIR3 SINE MIR -21 187 123 1510 191 3 56 chr4 107934386 107934710 -94393637 + AluJb SINE Alu 5 311 -1 22 35 0 0 chr4 107934942 107934971 -94393376 + AT_rich Low_complexity Low_complexity 1 29 0 343 178 0 0 chr4 107935134 107935207 -94393140 - MSTC LTR MaLR 0 428 356 312 158 35 0 chr4 107935222 107935279 -94393068 - MSTD LTR MaLR -337 59 1 533 174 25 0 chr4 107935279 107935400 -94392947 - MSTC-int LTR MaLR 0 1735 1612 4018 243 99 58 chr4 107935402 107936836 -94391511 - MSTC-int LTR MaLR -241 1494 2 1860 176 72 15 chr4 107936838 107937242 -94391105 - MSTC LTR MaLR 0 428 2 358 299 80 47 chr4 107937630 107937904 -94390443 - MLT1K LTR MaLR -157 431 149 329 299 172 0 chr4 107937905 107938109 -94390238 - LTR16A1 LTR ERVL -2 455 217 8855 178 11 6 chr4 107938754 107940061 -94388286 + L1P5 LINE L1 3301 4627 -1524 2331 101 0 3 chr4 107940061 107940359 -94387988 + AluSq SINE Alu 1 297 -16 8855 178 11 6 chr4 107940359 107941526 -94386821 + L1P5 LINE L1 4627 5786 -365 312 299 65 26 chr4 107941526 107941757 -94386590 - L1PBa LINE L1 -6318 545 306 232 137 39 0 chr4 107943238 107943289 -94385058 + (TA)n Simple_repeat Simple_repeat 1 53 0 24 85 0 0 chr4 107943334 107943393 -94384954 + AT_rich Low_complexity Low_complexity 1 59 0 293 127 36 0 chr4 107944326 107944381 -94383966 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 702 239 0 0 chr4 107944417 107944773 -94383574 + (CATATA)n Simple_repeat Simple_repeat 1 356 0 245 291 0 0 chr4 107944777 107944863 -94383484 - L1MC4 LINE L1 -1342 6700 6615 2446 92 6 3 chr4 107944882 107945274 -94383073 + L1PB1 LINE L1 5791 6183 0 1755 167 61 0 chr4 107946386 107946557 -94381790 - AluJb SINE Alu -1 311 113 257 0 30 0 chr4 107946557 107946590 -94381757 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1755 167 61 0 chr4 107946590 107946711 -94381636 - AluJb SINE Alu -199 113 1 1404 229 54 11 chr4 107947028 107947378 -94380969 + MLT1A1 LTR MaLR 1 365 0 6883 190 108 21 chr4 107947378 107948974 -94379373 + MLT1A1-int LTR MaLR 1 1735 0 1530 233 14 15 chr4 107948974 107949331 -94379016 + MLT1A1 LTR MaLR 1 461 -6 619 180 0 0 chr4 107949738 107949838 -94378509 - FLAM_A SINE Alu -23 119 20 348 342 70 11 chr4 107950009 107950234 -94378113 - MIR SINE MIR 0 262 19 5188 212 39 49 chr4 107951066 107952079 -94376268 + L1MD1 LINE L1 3299 4321 -1921 1916 130 19 16 chr4 107952079 107952402 -94375945 + L1MC1 LINE L1 6010 6333 0 5188 212 39 49 chr4 107952402 107953013 -94375334 + L1MD1 LINE L1 4321 4937 -1305 1709 194 7 0 chr4 107953013 107953307 -94375040 - AluJb SINE Alu -16 296 1 5188 212 39 49 chr4 107953307 107954158 -94374189 + L1MD1 LINE L1 4937 5733 -509 1215 241 31 14 chr4 107954158 107954448 -94373899 + AluJo SINE Alu 4 298 -4 5188 212 39 49 chr4 107954448 107954953 -94373394 + L1MD1 LINE L1 5733 6242 0 393 278 30 45 chr4 107954950 107955216 -94373131 + L1ME1 LINE L1 3331 3592 -2554 * 17392 117 53 16 chr4 107955245 107958244 -94370103 + L1PB1 LINE L1 3 3109 -3753 634 209 82 0 chr4 107958375 107958509 -94369838 - MLT1F1 LTR MaLR -78 489 345 33169 93 13 10 chr4 107958509 107963531 -94364816 + L1P LINE L1 21 5061 -1085 7140 129 98 100 chr4 107963531 107965229 -94363118 + pTR5 LTR ERV1 744 2438 0 6971 54 4 20 chr4 107965230 107966344 -94362003 + L1PA6 LINE L1 5055 6154 0 11080 207 21 11 chr4 107966434 107969256 -94359091 + L1PB1 LINE L1 3103 5954 -908 1051 113 0 0 chr4 107969257 107969416 -94358931 + MLT2A2 LTR ERVL 1 159 -294 1105 116 6 0 chr4 107969416 107969580 -94358767 + THE1C LTR MaLR 211 375 0 1451 100 0 8 chr4 107969580 107969845 -94358502 + L1P5 LINE L1 5235 5497 -654 4991 94 13 4 chr4 107969845 107970190 -94358157 + L1PB1 LINE L1 6153 6494 -373 555 45 23 11 chr4 107970190 107970278 -94358069 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 4991 94 13 4 chr4 107970278 107970633 -94357714 + L1PB1 LINE L1 6494 6861 -6 5924 215 45 28 chr4 107970642 107971410 -94356937 + L1ME1 LINE L1 3605 4359 -1807 2033 137 0 20 chr4 107971410 107971710 -94356637 - AluSx SINE Alu -18 294 1 5924 215 45 28 chr4 107971710 107973410 -94354937 + L1ME1 LINE L1 4359 6099 -67 189 0 0 0 chr4 107973414 107973435 -94354912 + (TC)n Simple_repeat Simple_repeat 1 21 0 1789 163 143 9 chr4 107975100 107975449 -94352898 - MSTD LTR MaLR 0 396 1 343 385 65 6 chr4 107975513 107975682 -94352665 + L1MEd LINE L1 512 690 -5429 596 271 97 34 chr4 107975696 107975965 -94352382 + L1MEd LINE L1 950 1235 -4884 276 192 64 29 chr4 107976017 107976189 -94352158 + (TATAA)n Simple_repeat Simple_repeat 3 180 0 * 362 186 66 6 chr4 107976068 107976235 -94352112 + (TA)n Simple_repeat Simple_repeat 2 178 0 251 160 32 70 chr4 107976248 107976404 -94351943 + (TTATA)n Simple_repeat Simple_repeat 3 152 0 402 274 20 0 chr4 107976665 107976767 -94351580 + MER81 DNA DNA 1 104 -10 2205 151 24 11 chr4 107976815 107977193 -94351154 + MLT1B LTR MaLR 1 383 -7 343 351 96 49 chr4 107977806 107978401 -94349946 + L2 LINE L2 1917 2539 -775 609 251 120 31 chr4 107978430 107978621 -94349726 + MIR SINE MIR 1 208 -54 232 185 309 0 chr4 107978664 107978745 -94349602 + MLT1J LTR MaLR 89 194 -317 2316 146 53 17 chr4 107978901 107979318 -94349029 + MSTB1 LTR MaLR 1 432 0 1691 215 35 38 chr4 107979572 107980024 -94348323 + MLT1C LTR MaLR 12 462 -5 282 56 0 0 chr4 107980241 107980277 -94348070 + (TCCC)n Simple_repeat Simple_repeat 3 38 0 2212 67 0 14 chr4 107980290 107980572 -94347775 - AluSx SINE Alu -34 278 1 438 245 130 114 chr4 107981939 107982447 -94345900 + L1M2 LINE L1 577 1363 -5486 333 0 0 0 chr4 107982966 107983003 -94345344 + (CA)n Simple_repeat Simple_repeat 1 37 0 232 246 0 49 chr4 107986374 107986435 -94341912 + L2 LINE L2 3213 3270 -2 211 282 34 20 chr4 107987447 107987596 -94340751 + (CATATA)n Simple_repeat Simple_repeat 5 155 0 * 344 203 49 0 chr4 107987531 107987654 -94340693 + (TA)n Simple_repeat Simple_repeat 2 130 0 27 29 0 0 chr4 107988018 107988052 -94340295 + AT_rich Low_complexity Low_complexity 1 34 0 898 128 0 0 chr4 107988052 107988177 -94340170 - AluSq/x SINE Alu -188 125 1 23 0 0 0 chr4 107988350 107988373 -94339974 + AT_rich Low_complexity Low_complexity 1 23 0 386 271 124 8 chr4 107990923 107991052 -94337295 + MIR3 SINE MIR 63 206 -2 341 256 91 60 chr4 107991404 107991603 -94336744 + HAL1 LINE L1 2225 2429 -78 24 0 0 0 chr4 107991649 107991673 -94336674 + AT_rich Low_complexity Low_complexity 1 24 0 561 152 71 0 chr4 107991691 107991803 -94336544 - L1MA9 LINE L1 -4 6308 6189 345 306 56 0 chr4 107991829 107991937 -94336410 - L2 LINE L2 -4 3309 3196 1826 181 7 3 chr4 107991969 107992279 -94336068 + AluJo SINE Alu 2 312 0 378 263 53 29 chr4 107992299 107992470 -94335877 - L1ME3A LINE L1 -8 6162 5988 202 29 57 0 chr4 107992908 107992943 -94335404 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 1326 148 81 66 chr4 107992949 107993220 -94335127 - AluJo SINE Alu -37 275 1 21 0 0 0 chr4 107993950 107993971 -94334376 + AT_rich Low_complexity Low_complexity 1 21 0 759 255 5 10 chr4 107994267 107994467 -94333880 - L1MEc LINE L1 -3273 2942 2744 2356 74 0 7 chr4 107994467 107994766 -94333581 + AluY SINE Alu 1 297 -14 2423 254 93 55 chr4 107994776 107994871 -94333476 - L1MEc LINE L1 -3456 2759 2669 900 214 137 53 chr4 107994871 107995208 -94333139 + MLT1A1 LTR MaLR 1 365 0 2423 254 93 55 chr4 107995208 107995683 -94332664 - L1MEc LINE L1 -3546 2669 2214 2832 0 0 0 chr4 107995683 107995985 -94332362 - AluYa5 SINE Alu -9 302 1 2423 254 93 55 chr4 107995985 107997415 -94330932 - L1MEc LINE L1 -4001 2214 703 181 325 111 56 chr4 107998572 107998806 -94329541 - L2 LINE L2 -672 2642 2396 777 266 166 76 chr4 107999358 107999647 -94328700 - MLT1H LTR MaLR -209 340 1 184 296 0 0 chr4 107999647 107999691 -94328656 + L2 LINE L2 3154 3197 -75 23 0 0 0 chr4 107999789 107999812 -94328535 + AT_rich Low_complexity Low_complexity 1 23 0 272 161 52 13 chr4 107999828 107999983 -94328364 + (TA)n Simple_repeat Simple_repeat 1 161 0 207 247 135 22 chr4 108000317 108000406 -94327941 + MIR SINE MIR 36 134 -128 1076 186 16 0 chr4 108000551 108000744 -94327603 - MER20 DNA MER1_type -1 218 23 383 262 124 20 chr4 108001615 108001817 -94326530 - L1ME3A LINE L1 -1987 5821 5599 315 227 49 18 chr4 108003652 108003757 -94324590 - MIR SINE MIR -39 169 64 316 292 80 15 chr4 108004353 108004562 -94323785 - MLT1J2 LTR MaLR -254 199 8 23 0 0 0 chr4 108004705 108004728 -94323619 + AT_rich Low_complexity Low_complexity 1 23 0 3058 129 54 40 chr4 108005036 108005556 -94322791 - MER1A DNA MER1_type 0 527 1 180 0 0 0 chr4 108006058 108006078 -94322269 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2051 169 47 49 chr4 108006373 108006841 -94321506 - MLT1C LTR MaLR 0 467 1 1021 190 0 44 chr4 108006861 108007087 -94321260 + L1PB4 LINE L1 5940 6155 -1 217 345 57 24 chr4 108007114 108007334 -94321013 + MIR SINE MIR 3 228 -34 222 208 0 0 chr4 108007500 108007548 -94320799 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 278 289 99 25 chr4 108007642 108007763 -94320584 - L2 LINE L2 0 3313 3184 719 139 209 6 chr4 108009380 108009552 -94318795 - MLT1D LTR MaLR -12 493 287 772 241 13 0 chr4 108009630 108009788 -94318559 - MLT1D LTR MaLR -345 160 1 440 305 34 0 chr4 108010053 108010171 -94318176 - L2 LINE L2 -2 3270 3149 219 211 39 0 chr4 108010831 108010883 -94317464 - L2 LINE L2 -14 3258 3205 2214 107 0 7 chr4 108012922 108013221 -94315126 + AluSg1 SINE Alu 1 297 -12 310 272 12 12 chr4 108017599 108017680 -94310667 - MIR3 SINE MIR -3 205 125 432 283 66 40 chr4 108018927 108019079 -94309268 + MIR SINE MIR 49 204 -58 2333 110 0 0 chr4 108019532 108019841 -94308506 + AluSg SINE Alu 1 309 -1 1118 184 39 0 chr4 108021610 108021817 -94306530 - MER20 DNA MER1_type -4 215 1 30 0 0 0 chr4 108022941 108022971 -94305376 + AT_rich Low_complexity Low_complexity 1 30 0 233 29 29 0 chr4 108023073 108023107 -94305240 + (TC)n Simple_repeat Simple_repeat 1 35 0 296 154 77 0 chr4 108025090 108025142 -94303205 - L2 LINE L2 -4 3309 3254 634 324 20 5 chr4 108025973 108026177 -94302170 - MIR SINE MIR -52 210 4 914 116 0 48 chr4 108026546 108026692 -94301655 + FLAM_C SINE Alu 1 139 -4 1204 306 82 33 chr4 108027010 108027582 -94300765 + L1MEd LINE L1 6 605 -5514 339 288 12 49 chr4 108027601 108027764 -94300583 + L1MEd LINE L1 673 829 -5290 182 200 200 17 chr4 108027934 108027994 -94300353 - MER5A DNA MER1_type -39 150 80 429 282 180 19 chr4 108028024 108028230 -94300117 + MIR SINE MIR 18 256 -6 2379 193 33 16 chr4 108028612 108029130 -94299217 + MER54A LTR ERVL 79 900 -1 1605 207 57 32 chr4 108029132 108029571 -94298776 - MLT1C LTR MaLR -17 450 1 182 244 353 0 chr4 108029750 108029869 -94298478 - MIR SINE MIR -12 250 90 357 192 73 0 chr4 108029913 108030064 -94298283 + (TA)n Simple_repeat Simple_repeat 1 162 0 1302 252 41 9 chr4 108030157 108030502 -94297845 + L2 LINE L2 2245 2600 -714 1368 235 41 20 chr4 108030507 108030945 -94297402 - L1MC4 LINE L1 -799 7243 6797 388 254 80 43 chr4 108030949 108031087 -94297260 - L1MC4a LINE L1 -1158 6650 6508 451 196 89 119 chr4 108031143 108031480 -94296867 - L1MC4a LINE L1 -1327 6481 6155 184 310 0 28 chr4 108031716 108031787 -94296560 - L2 LINE L2 -3 3310 3242 324 120 0 0 chr4 108031923 108031973 -94296374 + (TG)n Simple_repeat Simple_repeat 2 51 0 262 309 12 12 chr4 108032125 108032206 -94296141 + L3 LINE CR1 342 422 -1155 1985 304 116 12 chr4 108032251 108033079 -94295268 + L3 LINE CR1 575 1488 -89 22 0 0 0 chr4 108033977 108033999 -94294348 + AT_rich Low_complexity Low_complexity 1 22 0 246 135 0 0 chr4 108034553 108034590 -94293757 + L3 LINE CR1 1535 1571 -6 378 237 173 29 chr4 108034663 108034802 -94293545 - MIR3 SINE MIR -8 200 42 249 296 130 9 chr4 108035901 108036016 -94292331 - L2 LINE L2 -6 3307 3179 543 324 164 46 chr4 108036230 108037190 -94291157 - L2 LINE L2 -356 2958 1886 594 270 104 9 chr4 108037810 108038021 -94290326 - MIR SINE MIR -12 250 20 2431 83 32 27 chr4 108038614 108038987 -94289360 - L1PA12 LINE L1 0 6168 5794 329 299 0 0 chr4 108039125 108039212 -94289135 - L2 LINE L2 0 3313 3227 991 160 0 13 chr4 108039235 108039391 -94288956 - FRAM SINE Alu -23 153 1 771 293 106 18 chr4 108039391 108039837 -94288510 - L2 LINE L2 -94 3219 2735 265 206 65 22 chr4 108039844 108039936 -94288411 - L1MC5 LINE L1 -36 7925 7830 436 243 109 52 chr4 108039938 108040148 -94288199 - L2 LINE L2 -569 2745 2524 22 0 0 0 chr4 108040151 108040173 -94288174 + AT_rich Low_complexity Low_complexity 1 22 0 1761 181 13 10 chr4 108040235 108040545 -94287802 + AluJo SINE Alu 1 311 -1 311 224 33 121 chr4 108041235 108041379 -94286968 + MIR SINE MIR 40 171 -61 359 313 39 0 chr4 108041467 108041595 -94286752 - MIR SINE MIR -76 186 54 189 171 0 0 chr4 108041823 108041858 -94286489 + T-rich Low_complexity Low_complexity 1 35 0 353 211 87 29 chr4 108042244 108042348 -94285999 + MIR SINE MIR 94 203 -59 556 269 55 110 chr4 108042714 108043079 -94285268 + L2 LINE L2 2924 3268 -4 555 275 63 19 chr4 108043156 108043363 -94284984 - MIR SINE MIR -45 217 2 186 133 0 0 chr4 108043451 108043481 -94284866 + (CAT)n Simple_repeat Simple_repeat 3 32 0 813 240 107 0 chr4 108044127 108044323 -94284024 - MIR SINE MIR -27 235 19 2265 90 10 7 chr4 108044395 108044695 -94283652 - AluSx SINE Alu -11 301 1 284 145 0 16 chr4 108046241 108046303 -94282044 + (TCCC)n Simple_repeat Simple_repeat 2 62 0 350 299 0 0 chr4 108046468 108046545 -94281802 - MER81 DNA DNA -36 78 2 345 264 144 60 chr4 108047347 108047514 -94280833 - L1ME4a LINE L1 -96 6025 5845 540 195 73 16 chr4 108047871 108047994 -94280353 - MER94 DNA DNA 0 134 5 23 33 0 0 chr4 108048545 108048575 -94279772 + AT_rich Low_complexity Low_complexity 1 30 0 191 94 62 0 chr4 108049435 108049467 -94278880 - L2 LINE L2 0 3272 3239 393 343 44 22 chr4 108049771 108049952 -94278395 + MIR3 SINE MIR 17 201 -7 3015 170 25 82 chr4 108050808 108051218 -94277129 - L1PA7 LINE L1 -170 5984 5627 8761 42 10 2 chr4 108051218 108053058 -94275289 + L1PA5 LINE L1 4300 6147 -7 3015 170 25 82 chr4 108053058 108053330 -94275017 - L1PA7 LINE L1 -527 5627 5341 4016 255 84 37 chr4 108053331 108053602 -94274745 - L1MEc LINE L1 -4528 1868 1611 2298 85 3 0 chr4 108053602 108053896 -94274451 + AluSp SINE Alu 1 295 -18 4016 255 84 37 chr4 108053896 108055376 -94272971 - L1MEc LINE L1 -4785 1611 35 331 229 313 0 chr4 108055707 108055803 -94272544 - L2 LINE L2 0 3313 3188 224 222 0 0 chr4 108055993 108056038 -94272309 + CT-rich Low_complexity Low_complexity 4 48 0 1291 261 67 48 chr4 108056052 108056547 -94271800 + L2 LINE L2 2810 3313 0 1299 249 21 0 chr4 108057026 108057352 -94270995 + MER46C DNA MER2_type 6 338 0 221 307 25 68 chr4 108057724 108057887 -94270460 + L2 LINE L2 2720 2875 -439 251 221 15 15 chr4 108058973 108059041 -94269306 - L2 LINE L2 0 3313 3246 472 251 80 17 chr4 108059635 108059798 -94268549 + MIR SINE MIR 21 195 -65 546 175 105 9 chr4 108060108 108060222 -94268125 + FLAM_A SINE Alu 1 125 -8 249 33 0 0 chr4 108060222 108060252 -94268095 + (TA)n Simple_repeat Simple_repeat 2 31 0 1030 178 0 0 chr4 108062083 108062240 -94266107 + FRAM SINE Alu 1 157 -19 1054 201 26 66 chr4 108062801 108063074 -94265273 + MIR SINE MIR 1 262 0 1473 195 7 28 chr4 108063542 108063849 -94264498 - AluJo SINE Alu 0 313 13 430 274 62 45 chr4 108064382 108064561 -94263786 + L1MC4a LINE L1 5726 5907 -1901 309 285 123 11 chr4 108064574 108064753 -94263594 + L1MC4a LINE L1 5967 6165 -1643 189 0 0 0 chr4 108065426 108065447 -94262900 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1663 180 0 28 chr4 108065451 108065765 -94262582 - AluJo SINE Alu 0 306 1 294 297 87 65 chr4 108066663 108067077 -94261270 - L2 LINE L2 -666 2648 2226 635 229 21 0 chr4 108067169 108067309 -94261038 + Charlie4 DNA MER1_type 1818 1960 -1 241 313 144 19 chr4 108068550 108068758 -94259589 + L2 LINE L2 3074 3307 -6 25 0 0 0 chr4 108069020 108069045 -94259302 + AT_rich Low_complexity Low_complexity 1 25 0 322 316 11 0 chr4 108069397 108069492 -94258855 + MIR3 SINE MIR 85 180 -28 256 268 0 14 chr4 108070392 108070463 -94257884 + A-rich Low_complexity Low_complexity 4 73 0 10201 104 88 67 chr4 108070952 108071885 -94256462 + Tigger1 DNA MER2_type 23 935 -1483 942 117 0 0 chr4 108071885 108072013 -94256334 + FRAM SINE Alu 37 164 -12 10201 104 88 67 chr4 108072013 108073296 -94255051 + Tigger1 DNA MER2_type 935 2418 0 266 269 16 0 chr4 108074975 108075047 -94253300 - L1ME LINE L1 -529 5592 5520 22 0 0 0 chr4 108075743 108075765 -94252582 + AT_rich Low_complexity Low_complexity 1 22 0 373 291 131 11 chr4 108076043 108076231 -94252116 - MIR SINE MIR -12 250 41 24 32 0 0 chr4 108076567 108076598 -94251749 + AT_rich Low_complexity Low_complexity 1 31 0 494 280 126 6 chr4 108077433 108077608 -94250739 - MER58C DNA MER1_type -19 196 1 21 36 0 0 chr4 108079637 108079665 -94248682 + AT_rich Low_complexity Low_complexity 1 28 0 669 287 76 8 chr4 108080188 108080425 -94247922 + MIR SINE MIR 2 254 -8 435 333 97 35 chr4 108080587 108080875 -94247472 - L2 LINE L2 -49 3223 2918 24 100 0 0 chr4 108082722 108082802 -94245545 + AT_rich Low_complexity Low_complexity 1 80 0 2327 75 3 33 chr4 108082824 108083130 -94245217 + AluY SINE Alu 1 297 -14 2371 90 0 0 chr4 108083656 108083946 -94244401 - AluSg SINE Alu -20 290 1 500 174 59 41 chr4 108084856 108085099 -94243248 - L1MD3 LINE L1 -2 7993 6124 822 144 0 7 chr4 108086688 108086827 -94241520 + L1MA7 LINE L1 6147 6284 -7 207 329 54 24 chr4 108087441 108087608 -94240739 + L3b LINE CR1 1188 1359 -224 576 282 79 21 chr4 108088805 108089046 -94239301 - MIR SINE MIR 0 262 8 1563 207 3 22 chr4 108089446 108089760 -94238587 + AluJo SINE Alu 1 308 -4 2171 135 0 0 chr4 108089907 108090210 -94238137 + AluSx SINE Alu 3 305 -7 1177 287 93 45 chr4 108094583 108095366 -94232981 + L2 LINE L2 1239 2059 -1255 327 315 54 75 chr4 108095548 108095973 -94232374 + L2 LINE L2 2557 2972 -342 214 159 0 23 chr4 108096102 108096146 -94232201 - MIR3 SINE MIR -153 55 13 225 190 69 0 chr4 108096510 108096568 -94231779 - MLT1J1-int LTR MaLR -1193 178 117 180 0 0 0 chr4 108097674 108097694 -94230653 + (A)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr4 108097827 108097855 -94230492 + AT_rich Low_complexity Low_complexity 1 28 0 6149 15 5 3 chr4 108098225 108098889 -94229458 + L1PA2 LINE L1 5488 6152 -3 868 252 120 19 chr4 108099000 108099325 -94229022 + LTR16A LTR ERVL 90 447 -3 2176 121 62 37 chr4 108099615 108099970 -94228377 - THE1B LTR MaLR 0 364 1 938 280 136 31 chr4 108100383 108100801 -94227546 + MLT1G1 LTR MaLR 1 462 -133 434 271 8 34 chr4 108100786 108100904 -94227443 + MLT1G1 LTR MaLR 348 462 -133 * 991 234 18 18 chr4 108100889 108101115 -94227232 + MLT1G1 LTR MaLR 348 573 -22 242 277 75 21 chr4 108101796 108101890 -94226457 - MIR SINE MIR -76 186 88 192 214 107 18 chr4 108102284 108102340 -94226007 - L3 LINE CR1 -6 1571 1511 191 313 24 36 chr4 108102747 108102830 -94225517 - L2 LINE L2 -9 3263 3182 279 284 86 25 chr4 108102877 108103039 -94225308 - MLT1J1 LTR MaLR -112 334 163 383 183 0 0 chr4 108105448 108105508 -94222839 - Tigger5 DNA MER2_type 0 2323 2264 303 77 0 154 chr4 108105529 108105594 -94222753 - Tigger5 DNA MER2_type -2268 55 1 491 242 18 3 chr4 108105778 108106121 -94222226 + CT-rich Low_complexity Low_complexity 1 348 0 522 0 0 0 chr4 108106414 108106472 -94221875 + (TTTTA)n Simple_repeat Simple_repeat 4 61 0 513 210 154 25 chr4 108106699 108106883 -94221464 - MIR SINE MIR -6 256 51 2547 47 0 0 chr4 108107103 108107400 -94220947 - AluY SINE Alu -14 297 1 267 257 43 0 chr4 108107679 108107749 -94220598 - Charlie8 DNA MER1_type -2298 119 47 559 326 72 25 chr4 108107972 108108208 -94220139 - MIR SINE MIR -2 260 14 399 231 82 15 chr4 108108208 108108342 -94220005 - MLT1L LTR MaLR 0 615 473 530 277 94 19 chr4 108108386 108108642 -94219705 - MLT1L LTR MaLR -236 379 105 431 273 38 8 chr4 108109407 108109539 -94218808 + L2 LINE L2 3178 3313 0 2410 153 85 18 chr4 108110268 108110666 -94217681 + MSTB LTR MaLR 2 426 0 434 316 33 0 chr4 108111089 108111241 -94217106 - MIR SINE MIR -69 193 37 542 272 52 0 chr4 108111294 108111467 -94216880 - MIR SINE MIR -15 247 66 423 0 0 0 chr4 108111682 108111729 -94216618 + (TG)n Simple_repeat Simple_repeat 2 48 0 25 31 0 0 chr4 108112077 108112109 -94216238 + AT_rich Low_complexity Low_complexity 1 32 0 372 278 148 17 chr4 108113687 108113863 -94214484 - LTR67 LTR ERVL -2 555 357 339 315 19 0 chr4 108113991 108114099 -94214248 - LTR67 LTR ERVL -361 196 87 296 343 126 25 chr4 108114875 108115073 -94213274 + MIR SINE MIR 26 243 -19 556 250 183 5 chr4 108115711 108115919 -94212428 + MIR SINE MIR 7 251 -11 283 353 57 4 chr4 108116174 108116354 -94211993 - MIR SINE MIR -54 208 19 1532 124 171 0 chr4 108116824 108117081 -94211266 - MER7A DNA MER2_type -47 299 1 3965 161 44 108 chr4 108117381 108117426 -94210921 + MER21A LTR ERV1 1 47 -884 2806 99 6 11 chr4 108117426 108117791 -94210556 + THE1B LTR MaLR 2 364 0 3965 161 44 108 chr4 108117791 108118698 -94209649 + MER21A LTR ERV1 47 892 -39 1708 173 6 16 chr4 108118717 108119029 -94209318 + AluJb SINE Alu 1 309 -3 243 239 14 28 chr4 108119379 108119450 -94208897 + MARNA DNA Mariner 136 205 -381 * 379 175 0 0 chr4 108119446 108119509 -94208838 + Alu SINE Alu 236 298 -3 185 352 62 23 chr4 108121474 108121602 -94206745 - L2 LINE L2 -6 3266 3134 384 320 106 16 chr4 108121754 108122076 -94206271 - L2 LINE L2 -337 2977 2627 2313 106 0 0 chr4 108122901 108123203 -94205144 + AluY SINE Alu 1 302 -9 206 182 0 0 chr4 108123296 108123329 -94205018 + MIR SINE MIR 43 75 -133 275 200 8 150 chr4 108123336 108123456 -94204891 + MLT1J2 LTR MaLR 15 117 -333 4259 167 73 31 chr4 108123532 108124762 -94203585 - L1MB7 LINE L1 -23 6161 4880 4327 120 45 4 chr4 108124762 108125479 -94202868 + L1MA8 LINE L1 5544 6289 -2 4259 167 73 31 chr4 108125479 108125638 -94202709 - L1MB7 LINE L1 -1304 4880 4729 2481 238 17 34 chr4 108125658 108126431 -94201916 - L1MB7 LINE L1 -2216 3930 3171 424 289 65 50 chr4 108126565 108126766 -94201581 + MIR SINE MIR 56 259 -3 2446 193 57 29 chr4 108128712 108129330 -94199017 + L1MB7 LINE L1 5549 6183 -1 3059 234 56 48 chr4 108129364 108130488 -94197859 - L1ME3 LINE L1 -66 6096 4973 790 181 0 8 chr4 108130488 108130621 -94197726 - FLAM_A SINE Alu -1 132 1 3059 234 56 48 chr4 108130621 108130867 -94197480 - L1ME3 LINE L1 -1189 4973 4730 2193 118 24 0 chr4 108132535 108132907 -94195440 - L1MA5 LINE L1 -2 6298 5918 512 173 31 63 chr4 108133154 108133184 -94195163 - MIR SINE MIR -64 198 169 2066 126 3 17 chr4 108133184 108133486 -94194861 + AluJo SINE Alu 1 298 -14 512 173 31 63 chr4 108133486 108133582 -94194765 - MIR SINE MIR -93 169 76 786 247 26 74 chr4 108133683 108133791 -94194556 - MIR SINE MIR -3 259 147 417 39 0 0 chr4 108133791 108133842 -94194505 + (CA)n Simple_repeat Simple_repeat 2 52 0 786 247 26 74 chr4 108133842 108134004 -94194343 - MIR SINE MIR -115 147 2 370 153 42 0 chr4 108134902 108134974 -94193373 + L1MA8 LINE L1 6209 6283 -8 5759 194 43 20 chr4 108135154 108136546 -94191801 + L1MB8 LINE L1 3879 5357 -821 1907 147 0 20 chr4 108136546 108136845 -94191502 + AluJb SINE Alu 1 293 -19 5759 194 43 20 chr4 108136845 108137681 -94190666 + L1MB8 LINE L1 5357 6172 -6 1050 161 55 55 chr4 108138773 108138990 -94189357 - MER20 DNA MER1_type 0 219 3 313 315 133 42 chr4 108138995 108139160 -94189187 + MIR SINE MIR 12 191 -71 315 205 13 26 chr4 108139375 108139453 -94188894 + MLT1J2 LTR MaLR 358 434 -16 233 175 0 0 chr4 108139511 108139551 -94188796 + L2 LINE L2 1372 1411 -1903 206 306 106 0 chr4 108139549 108139634 -94188713 - L2 LINE L2 0 3313 3220 * 186 43 0 0 chr4 108139634 108139657 -94188690 + (GA)n Simple_repeat Simple_repeat 2 24 0 233 353 65 65 chr4 108139676 108139829 -94188518 - L2 LINE L2 -4 3268 3116 32 43 0 0 chr4 108141005 108141051 -94187296 + AT_rich Low_complexity Low_complexity 1 46 0 1441 208 4 4 chr4 108141065 108141330 -94187017 - AluJo SINE Alu -47 265 1 206 130 56 0 chr4 108141331 108141385 -94186962 + (TATAA)n Simple_repeat Simple_repeat 3 59 0 256 342 103 40 chr4 108141396 108141747 -94186600 + L2 LINE L2 2597 2969 -345 204 40 0 0 chr4 108142783 108142808 -94185539 + (ATG)n Simple_repeat Simple_repeat 1 25 0 2094 112 0 42 chr4 108142835 108143148 -94185199 + AluSc SINE Alu 1 300 -9 651 254 159 5 chr4 108143765 108143966 -94184381 - MIR SINE MIR -26 236 5 2343 42 42 7 chr4 108144925 108145213 -94183134 - AluY SINE Alu -13 298 1 269 230 190 46 chr4 108147317 108147491 -94180856 - L1ME3A LINE L1 0 6170 5972 416 204 66 66 chr4 108147573 108147740 -94180607 - L1MC5 LINE L1 -1004 6957 6791 306 293 93 72 chr4 108147740 108148030 -94180317 - L2 LINE L2 -572 2742 2447 348 310 52 0 chr4 108148151 108148267 -94180080 - MIR SINE MIR -57 205 84 534 274 119 0 chr4 108148855 108149023 -94179324 - L1MC5 LINE L1 -1137 6824 6637 1159 285 19 9 chr4 108149088 108149411 -94178936 - L2 LINE L2 -820 2494 2169 691 248 55 60 chr4 108150116 108150138 -94178209 + MIR SINE MIR 13 34 -228 2282 94 0 16 chr4 108150138 108150274 -94178073 + AluSx SINE Alu 2 139 -173 2467 78 0 0 chr4 108150274 108150581 -94177766 + AluY SINE Alu 1 307 -4 2282 94 0 16 chr4 108150581 108150753 -94177594 + AluSx SINE Alu 139 305 -7 691 248 55 60 chr4 108150753 108150948 -94177399 + MIR SINE MIR 34 229 -33 1666 132 0 77 chr4 108151137 108151424 -94176923 + AluSx SINE Alu 1 265 -47 32 43 0 0 chr4 108151424 108151470 -94176877 + AT_rich Low_complexity Low_complexity 1 46 0 25 65 0 0 chr4 108152217 108152263 -94176084 + AT_rich Low_complexity Low_complexity 1 46 0 653 253 25 77 chr4 108153074 108153177 -94175170 - L1MA9 LINE L1 -38 6274 6167 1837 146 71 25 chr4 108153177 108153499 -94174848 + MER1B DNA MER1_type 1 337 0 653 253 25 77 chr4 108153499 108153718 -94174629 - L1MA9 LINE L1 -145 6167 5963 2290 92 0 3 chr4 108153805 108154097 -94174250 + AluSx SINE Alu 6 296 -16 232 341 65 24 chr4 108154249 108154372 -94173975 + L3b LINE CR1 1452 1579 -4 255 280 13 0 chr4 108154989 108155064 -94173283 - HsTC2 DNA Tc2 -1812 86 11 10591 185 63 36 chr4 108155739 108156349 -94171998 + Charlie1 DNA MER1_type 5 597 -2164 1495 137 9 0 chr4 108156349 108156560 -94171787 + AluSg/x SINE Alu 82 294 -16 10591 185 63 36 chr4 108156560 108158632 -94169715 + Charlie1 DNA MER1_type 597 2760 -1 547 278 41 41 chr4 108159850 108160167 -94168180 - MER97c DNA MER1_type? -5 1085 769 1116 140 65 149 chr4 108161598 108161920 -94166427 + AluJo SINE Alu 2 296 -6 2758 207 77 49 chr4 108161965 108162439 -94165908 - MER97b DNA MER1_type? -240 813 307 2339 93 3 3 chr4 108162439 108162741 -94165606 + AluSp SINE Alu 1 302 -11 2758 207 77 49 chr4 108162741 108163057 -94165290 - MER97b DNA MER1_type? -746 307 1 1692 182 153 15 chr4 108163123 108163529 -94164818 + MLT1C LTR MaLR 6 467 0 195 139 0 0 chr4 108163745 108163781 -94164566 + (A)n Simple_repeat Simple_repeat 1 36 0 24 53 0 0 chr4 108164381 108164419 -94163928 + AT_rich Low_complexity Low_complexity 1 38 0 525 275 96 12 chr4 108164903 108165143 -94163204 + L1ME3A LINE L1 5483 5765 -405 729 126 0 0 chr4 108165206 108165309 -94163038 - Tigger7 DNA MER2_type 0 2587 2485 * 1436 186 60 0 chr4 108165308 108165556 -94162791 - Tigger7 DNA MER2_type -2224 263 1 1011 211 36 75 chr4 108165560 108165892 -94162455 + L1ME3A LINE L1 5852 6170 0 281 224 0 0 chr4 108166266 108166333 -94162014 - L1MC4 LINE L1 0 8042 7976 265 188 356 47 chr4 108166343 108166492 -94161855 - L1MC4 LINE L1 -299 7743 7549 1170 270 131 16 chr4 108166522 108166766 -94161581 - L1MC4 LINE L1 -1091 6951 6736 189 0 0 0 chr4 108166766 108166787 -94161560 + (TG)n Simple_repeat Simple_repeat 2 22 0 1170 270 131 16 chr4 108166787 108166986 -94161361 - L1MC4 LINE L1 -1306 6736 6457 1258 335 102 38 chr4 108167040 108168451 -94159896 + L2 LINE L2 1764 3268 -4 261 57 0 0 chr4 108168871 108168906 -94159441 + (CA)n Simple_repeat Simple_repeat 1 35 0 279 0 0 0 chr4 108168962 108168993 -94159354 + (CA)n Simple_repeat Simple_repeat 2 32 0 577 277 24 19 chr4 108169350 108169563 -94158784 + HAL1 LINE L1 2285 2498 -9 2233 109 3 0 chr4 108169643 108169936 -94158411 + AluSx SINE Alu 1 294 -18 225 174 0 0 chr4 108169947 108169993 -94158354 - LTR66 LTR ERVL -171 439 394 24 67 0 0 chr4 108170095 108170140 -94158207 + AT_rich Low_complexity Low_complexity 1 45 0 31 44 0 0 chr4 108171348 108171393 -94156954 + AT_rich Low_complexity Low_complexity 1 45 0 535 299 94 78 chr4 108171840 108172078 -94156269 - L2 LINE L2 -4 3268 3035 1756 161 30 10 chr4 108172078 108172383 -94155964 - AluJo SINE Alu -1 311 1 535 299 94 78 chr4 108172383 108172715 -94155632 - L2 LINE L2 -237 3035 2690 979 187 79 51 chr4 108173812 108173889 -94154458 + MER58A DNA MER1_type 5 78 -2342 1285 218 140 36 chr4 108173889 108174224 -94154123 + MLT1A2 LTR MaLR 1 370 -4 979 187 79 51 chr4 108174224 108174360 -94153987 + MER58A DNA MER1_type 78 224 0 469 342 16 21 chr4 108174362 108174555 -94153792 - L3 LINE CR1 -81 1496 1305 205 239 275 7 chr4 108176141 108176283 -94152064 - MIR3 SINE MIR -7 201 22 1707 186 7 0 chr4 108176521 108176817 -94151530 + AluJo SINE Alu 1 298 -14 38297 28 1 0 chr4 108177931 108183210 -94145137 - L1PA3 LINE L1 0 6155 873 249 267 69 0 chr4 108183590 108183691 -94144656 - L1ME4a LINE L1 -21 6100 5993 1459 179 43 29 chr4 108183696 108183817 -94144530 - AluJb SINE Alu 0 310 192 3557 153 15 93 chr4 108183817 108184395 -94143952 + LTR8 LTR ERV1 1 508 -183 2123 122 0 0 chr4 108184395 108184690 -94143657 + AluY SINE Alu 7 301 -10 3557 153 15 93 chr4 108184690 108184861 -94143486 + LTR8 LTR ERV1 508 691 0 1459 179 43 29 chr4 108184861 108185045 -94143302 - AluJb SINE Alu -118 192 1 32 43 0 0 chr4 108185077 108185123 -94143224 + AT_rich Low_complexity Low_complexity 1 46 0 15554 200 48 34 chr4 108185539 108189598 -94138749 + L1MA6 LINE L1 2 4135 -2713 778 119 37 0 chr4 108189615 108189724 -94138623 + FLAM_C SINE Alu 2 114 -29 204 40 0 0 chr4 108189727 108189752 -94138595 + (GGAAA)n Simple_repeat Simple_repeat 4 28 0 871 163 18 4 chr4 108189763 108189990 -94138357 + GA-rich Low_complexity Low_complexity 1 230 0 204 40 0 0 chr4 108190005 108190030 -94138317 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 9231 175 51 19 chr4 108190030 108192788 -94135559 + L1MA6 LINE L1 4147 6997 -5 1836 154 10 33 chr4 108193099 108193405 -94134942 - AluJb SINE Alu -13 299 1 2386 82 20 0 chr4 108194196 108194502 -94133845 + AluSq SINE Alu 1 312 -1 1830 167 82 50 chr4 108195231 108195608 -94132739 - MLT1B LTR MaLR 0 390 2 745 219 184 140 chr4 108195642 108196069 -94132278 + MLT1F1 LTR MaLR 52 505 -62 1738 73 23 0 chr4 108196069 108196289 -94132058 - L1PA13 LINE L1 0 6163 5939 745 219 184 140 chr4 108196289 108196355 -94131992 + MLT1F1 LTR MaLR 505 567 0 2408 100 3 0 chr4 108196604 108196914 -94131433 + AluSp SINE Alu 1 311 -2 1119 334 112 26 chr4 108197723 108198000 -94130347 - L2 LINE L2 -9 3263 3011 1463 153 119 4 chr4 108198000 108198268 -94130079 - AluJb SINE Alu -13 299 1 1119 334 112 26 chr4 108198268 108199129 -94129218 - L2 LINE L2 -261 3011 2025 3925 118 74 32 chr4 108199259 108200131 -94128216 - MER11A LTR ERVK 0 1266 219 2251 104 0 0 chr4 108200734 108201031 -94127316 + AluSx SINE Alu 7 303 -9 1310 81 0 0 chr4 108201031 108201192 -94127155 + AluSg/x SINE Alu 134 294 -18 1998 122 0 0 chr4 108201629 108201935 -94126412 + AluSx SINE Alu 13 318 0 3349 120 26 74 chr4 108201939 108202321 -94126026 + L1MB2 LINE L1 5588 5932 -239 2045 156 0 6 chr4 108202321 108202635 -94125712 + AluJb SINE Alu 1 312 0 3349 120 26 74 chr4 108202635 108202862 -94125485 + L1MB2 LINE L1 5932 6168 -3 390 262 117 21 chr4 108204169 108204314 -94124033 - MIR SINE MIR -12 250 92 2000 99 60 3 chr4 108204849 108205132 -94123215 + AluSq SINE Alu 1 299 -14 180 320 150 0 chr4 108205212 108205312 -94123035 - L2 LINE L2 -12 3260 3146 2345 127 33 55 chr4 108205387 108205843 -94122504 + L1MB8 LINE L1 5727 6172 -6 281 93 19 0 chr4 108207038 108207092 -94121255 + (CAAAA)n Simple_repeat Simple_repeat 3 57 0 24 53 0 0 chr4 108207300 108207338 -94121009 + AT_rich Low_complexity Low_complexity 1 38 0 905 121 0 0 chr4 108207532 108207648 -94120699 - AluSq/x SINE Alu -197 116 1 466 239 251 49 chr4 108210826 108211073 -94117274 - LTR21A LTR ERV1 -208 297 1 830 217 78 42 chr4 108211338 108211754 -94116593 + LTR10B LTR ERV1 17 493 -54 865 261 0 3 chr4 108212103 108212361 -94115986 + MER58B DNA MER1_type 5 341 0 2225 109 0 10 chr4 108212485 108212779 -94115568 - AluSq SINE Alu -20 293 3 2429 174 7 20 chr4 108213656 108213715 -94114632 + L1MC1 LINE L1 5879 5937 -396 1545 138 179 54 chr4 108213715 108213920 -94114427 + LTR54B LTR ERV1 1 179 -319 1745 152 10 42 chr4 108213920 108214230 -94114117 - AluJo SINE Alu -12 300 1 1545 138 179 54 chr4 108214230 108214465 -94113882 + LTR54B LTR ERV1 179 496 -2 2429 174 7 20 chr4 108214465 108214843 -94113504 + L1MC1 LINE L1 5937 6310 -23 301 349 104 21 chr4 108216312 108216553 -94111794 - MIR SINE MIR 0 262 2 358 290 174 7 chr4 108216634 108216772 -94111575 - MIR SINE MIR -90 172 12 11828 122 47 37 chr4 108217264 108218043 -94110304 + L1PB1 LINE L1 3 773 -6090 2545 65 0 0 chr4 108218043 108218351 -94109996 - AluY SINE Alu -3 308 1 11828 122 47 37 chr4 108218351 108219572 -94108775 + L1PB1 LINE L1 773 2023 -4840 9926 176 23 7 chr4 108219568 108222467 -94105880 + L1PB1 LINE L1 3895 6837 -30 * 26483 73 9 5 chr4 108222467 108225927 -94102420 - HERVL-A2 LTR ERVL -416 5238 1762 10503 71 6 14 chr4 108225921 108227261 -94101086 - HERVL-A2 LTR ERVL -4206 1448 118 * 2360 90 0 0 chr4 108227261 108227571 -94100776 + AluY SINE Alu 1 310 -1 10503 71 6 14 chr4 108227571 108227689 -94100658 - HERVL-A2 LTR ERVL -5536 118 1 3348 98 11 0 chr4 108227689 108228137 -94100210 - MLT2A2 LTR ERVL 0 453 1 658 298 19 19 chr4 108228712 108228927 -94099420 + MIR SINE MIR 44 258 -4 319 246 70 80 chr4 108228939 108229138 -94099209 + L1MC4a LINE L1 5835 6031 -1777 2287 101 0 0 chr4 108229203 108229499 -94098848 + AluSg SINE Alu 1 296 -14 437 330 115 5 chr4 108230174 108230365 -94097982 + MIR SINE MIR 41 252 -10 23 33 0 0 chr4 108230881 108230911 -94097436 + AT_rich Low_complexity Low_complexity 1 30 0 665 211 20 60 chr4 108231081 108231202 -94097145 + L1MC5 LINE L1 7669 7776 -185 1970 170 0 0 chr4 108231202 108231513 -94096834 + AluJo SINE Alu 2 312 0 665 211 20 60 chr4 108231513 108231642 -94096705 + L1MC5 LINE L1 7776 7909 -52 184 302 32 0 chr4 108231794 108231857 -94096490 - L2 LINE L2 -905 2409 2345 22 35 0 0 chr4 108233606 108233635 -94094712 + AT_rich Low_complexity Low_complexity 1 29 0 494 258 120 21 chr4 108233659 108233942 -94094405 + L1ME4a LINE L1 5783 6093 -28 804 132 5 4 chr4 108234378 108234598 -94093749 + AluSx SINE Alu 8 307 -5 431 309 58 10 chr4 108234757 108235068 -94093279 + L1ME4a LINE L1 5519 5844 -277 2383 91 3 0 chr4 108235115 108235424 -94092923 - AluY SINE Alu -1 310 1 7294 48 1 12 chr4 108235520 108237214 -94091133 + L1PA5 LINE L1 4471 6154 0 30 0 0 0 chr4 108237214 108237244 -94091103 + AT_rich Low_complexity Low_complexity 1 30 0 231 36 0 0 chr4 108237367 108237395 -94090952 + (A)n Simple_repeat Simple_repeat 1 28 0 213 333 19 48 chr4 108237509 108237614 -94090733 + L2 LINE L2 3141 3242 -30 2289 102 3 0 chr4 108237618 108237913 -94090434 + AluSp SINE Alu 1 296 -17 1420 251 81 49 chr4 108238038 108238893 -94089454 + L2 LINE L2 2404 3296 -17 1728 132 93 0 chr4 108239114 108239394 -94088953 - AluJb SINE Alu -6 306 1 553 172 0 0 chr4 108239700 108239799 -94088548 - FLAM_C SINE Alu -2 141 43 468 141 0 0 chr4 108239805 108239876 -94088471 - FLAM_C SINE Alu -36 107 37 412 278 92 35 chr4 108240286 108240459 -94087888 + MIR SINE MIR 3 185 -77 216 0 0 0 chr4 108240660 108240684 -94087663 + (CA)n Simple_repeat Simple_repeat 2 25 0 247 351 45 0 chr4 108242053 108242164 -94086183 + MIR SINE MIR 147 262 0 229 219 123 0 chr4 108242242 108242315 -94086032 + MIR SINE MIR 48 129 -133 403 237 135 39 chr4 108242693 108242779 -94085568 - MIR3 SINE MIR -16 192 116 2223 95 16 10 chr4 108242779 108243084 -94085263 + AluSx SINE Alu 1 307 -5 403 237 135 39 chr4 108243084 108243153 -94085194 - MIR3 SINE MIR -92 116 22 313 208 0 109 chr4 108244422 108244523 -94083824 - L1MC4 LINE L1 -1339 6703 6614 215 130 70 0 chr4 108244525 108244625 -94083722 + (TA)n Simple_repeat Simple_repeat 2 108 0 5793 183 30 21 chr4 108244671 108245891 -94082456 + L1MC1 LINE L1 12 1242 -5184 2442 129 14 52 chr4 108245891 108246522 -94081825 - MER4B LTR ERV1 0 779 1 2140 137 53 13 chr4 108246523 108247112 -94081235 + L1MC1 LINE L1 1240 1939 -4487 812 190 0 0 chr4 108247117 108247254 -94081093 + FLAM_C SINE Alu 6 142 -1 681 188 267 0 chr4 108247275 108247477 -94080870 + L1MC1 LINE L1 1927 2182 -4244 2050 128 14 0 chr4 108247479 108247775 -94080572 + AluSq SINE Alu 2 301 -12 219 69 0 0 chr4 108247808 108247837 -94080510 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1790 160 20 24 chr4 108247848 108248142 -94080205 + AluJb SINE Alu 1 293 -19 27 0 0 0 chr4 108248142 108248169 -94080178 + AT_rich Low_complexity Low_complexity 1 27 0 5177 153 16 89 chr4 108248176 108248280 -94080067 + L1PA16 LINE L1 4553 4663 -1503 2310 99 3 0 chr4 108248280 108248573 -94079774 + AluSp SINE Alu 1 294 -19 2234 86 0 43 chr4 108248576 108248901 -94079446 + AluY SINE Alu 1 311 0 5177 153 16 89 chr4 108248901 108249291 -94079056 + L1PA16 LINE L1 4665 5082 -1084 775 142 8 16 chr4 108249291 108249418 -94078929 + FLAM_C SINE Alu 1 126 -17 5177 153 16 89 chr4 108249418 108250175 -94078172 + L1PA16 LINE L1 5082 5755 -411 1855 156 0 26 chr4 108250175 108250477 -94077870 + AluJb SINE Alu 1 294 -18 5177 153 16 89 chr4 108250477 108250856 -94077491 + L1PA16 LINE L1 5755 6160 -6 5814 203 48 55 chr4 108250863 108251059 -94077288 + L1MC1 LINE L1 2173 2369 -4057 693 73 10 0 chr4 108251059 108251155 -94077192 + L1PB2 LINE L1 6053 6149 -2 5814 203 48 55 chr4 108251155 108252214 -94076133 + L1MC1 LINE L1 2369 3433 -2993 389 165 33 0 chr4 108252214 108252305 -94076042 + L1MB4 LINE L1 6086 6179 -1 5814 203 48 55 chr4 108252305 108252848 -94075499 + L1MC1 LINE L1 3433 3953 -2473 2538 61 0 3 chr4 108252848 108253160 -94075187 + AluY SINE Alu 1 311 0 5814 203 48 55 chr4 108253160 108253649 -94074698 + L1MC1 LINE L1 3953 4444 -1982 4253 128 19 50 chr4 108253649 108253968 -94074379 + Tigger3b DNA MER2_type 1 328 -2700 2519 56 0 10 chr4 108253968 108254273 -94074074 - AluY SINE Alu -9 302 1 4253 128 19 50 chr4 108254273 108254792 -94073555 + Tigger3b DNA MER2_type 328 813 -418 2853 132 51 22 chr4 108254802 108255137 -94073210 + L1MC1 LINE L1 5538 5897 -716 1663 179 30 85 chr4 108255137 108255573 -94072774 + MLT2D LTR ERVL 1 412 -2 2853 132 51 22 chr4 108255573 108255784 -94072563 + L1MC1 LINE L1 5897 6100 -513 2277 119 3 0 chr4 108255785 108256088 -94072259 + AluSx SINE Alu 5 308 -4 776 165 0 0 chr4 108256094 108256215 -94072132 + AluSc SINE Alu 133 253 -56 2525 127 30 34 chr4 108256216 108256689 -94071658 + L1MC1 LINE L1 6138 6608 -5 546 167 0 0 chr4 108256691 108256787 -94071560 + L1MB7 LINE L1 5320 5415 -759 1842 168 3 12 chr4 108256790 108257130 -94071217 - MLT1A1 LTR MaLR -3 362 26 2238 194 0 0 chr4 108257154 108257581 -94070766 + L1MB7 LINE L1 5409 5835 -349 1222 171 33 15 chr4 108257588 108257862 -94070485 + L1MB7 LINE L1 5903 6181 -3 452 257 11 34 chr4 108257874 108258049 -94070298 - HAL1 LINE L1 -839 1668 1498 186 133 0 0 chr4 108258078 108258108 -94070239 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 494 215 0 6 chr4 108258282 108258398 -94069949 - L1ME2 LINE L1 0 6178 6059 374 258 72 38 chr4 108258471 108258680 -94069667 - L1M4 LINE L1 -1002 5144 4929 1271 239 58 7 chr4 108258690 108259105 -94069242 - L1M4 LINE L1 -823 5323 4888 454 222 139 48 chr4 108259552 108259806 -94068541 - LTR28 LTR ERV1 -223 603 332 426 299 114 11 chr4 108259867 108260051 -94068296 - LTR1 LTR ERV1 -555 230 28 338 326 114 8 chr4 108260372 108260636 -94067711 + ERVL LTR ERVL 2710 3001 -2763 1771 150 6 86 chr4 108260636 108260963 -94067384 + AluJb SINE Alu 1 301 -11 254 49 0 49 chr4 108260970 108261011 -94067336 + (GGGGA)n Simple_repeat Simple_repeat 5 43 0 272 235 143 20 chr4 108261084 108261182 -94067165 + ERVL LTR ERVL 3060 3169 -2485 445 297 77 10 chr4 108261274 108261469 -94066878 + ERVL LTR ERVL 4978 5185 -579 1099 173 141 0 chr4 108261740 108262046 -94066301 - Charlie5 DNA MER1_type 0 2620 2272 1789 233 62 20 chr4 108262047 108262247 -94066100 + LTR40a LTR ERVL 1 191 -328 2179 198 50 24 chr4 108262247 108262707 -94065640 + MER70A LTR ERVL 1 472 0 1789 233 62 20 chr4 108262707 108263004 -94065343 + LTR40a LTR ERVL 191 519 0 7491 172 93 54 chr4 108263004 108263985 -94064362 - Charlie5 DNA MER1_type -349 2275 1334 2164 113 0 0 chr4 108263985 108264297 -94064050 + AluSx SINE Alu 1 312 0 7491 172 93 54 chr4 108264297 108264636 -94063711 - Charlie5 DNA MER1_type -1290 1334 1010 324 0 0 0 chr4 108264636 108264672 -94063675 + (TG)n Simple_repeat Simple_repeat 2 37 0 7491 172 93 54 chr4 108264672 108265048 -94063299 - Charlie5 DNA MER1_type -1614 1010 650 2183 125 6 3 chr4 108265048 108265359 -94062988 - AluSq SINE Alu -1 312 1 7491 172 93 54 chr4 108265359 108265438 -94062909 - Charlie5 DNA MER1_type -1974 650 576 1895 120 55 0 chr4 108265438 108265712 -94062635 - AluSx SINE Alu -23 289 1 7491 172 93 54 chr4 108265712 108266122 -94062225 - Charlie5 DNA MER1_type -2048 576 1 187 250 0 36 chr4 108266125 108266181 -94062166 - L2 LINE L2 -55 3258 3205 287 246 49 16 chr4 108266184 108266306 -94062041 - L1MEd LINE L1 -3874 2255 2130 1663 152 10 42 chr4 108266325 108266614 -94061733 - AluJb SINE Alu -32 280 1 509 249 23 6 chr4 108266795 108266972 -94061375 - L1MD3 LINE L1 -1 7994 7815 316 227 45 0 chr4 108267294 108267382 -94060965 - LTR41 LTR ERVL -591 182 91 1864 184 5 16 chr4 108267430 108267685 -94060662 - MER47A DNA MER2_type -1957 366 115 1800 162 29 19 chr4 108267685 108267994 -94060353 + AluJo SINE Alu 1 312 0 1864 184 5 16 chr4 108267994 108268108 -94060239 - MER47A DNA MER2_type -2208 115 1 274 311 0 0 chr4 108268108 108268182 -94060165 + Tigger7 DNA MER2_type 4 77 -656 651 167 23 2 chr4 108268182 108268402 -94059945 - Tigger7 DNA MER2_type -2140 347 76 * 1234 145 190 0 chr4 108268400 108268689 -94059658 + Tigger7 DNA MER2_type 2143 2486 -1 233 264 142 24 chr4 108268744 108268956 -94059391 - L1MEd LINE L1 -4988 1131 895 600 267 51 36 chr4 108269025 108269220 -94059127 + MIR SINE MIR 10 207 -55 2373 84 0 3 chr4 108269224 108269523 -94058824 + AluSq SINE Alu 1 298 -15 225 154 0 0 chr4 108269527 108269566 -94058781 + (TG)n Simple_repeat Simple_repeat 2 40 0 230 254 17 0 chr4 108269567 108269626 -94058721 + MIR SINE MIR 203 262 0 3752 198 91 9 chr4 108269645 108271265 -94057082 - L1MB5 LINE L1 -9 6165 4385 2085 120 0 23 chr4 108271265 108271566 -94056781 - AluSg SINE Alu -16 294 1 3752 198 91 9 chr4 108271566 108271745 -94056602 - L1MB5 LINE L1 -1789 4385 4222 21 36 0 0 chr4 108271777 108271805 -94056542 + AT_rich Low_complexity Low_complexity 1 28 0 326 286 154 46 chr4 108271904 108272079 -94056268 - L1MEd LINE L1 -5506 613 420 669 148 79 2 chr4 108272174 108272402 -94055945 + AluJo SINE Alu 1 300 -12 271 146 91 0 chr4 108272729 108272784 -94055563 + L1M LINE L1 5326 5385 -793 850 302 168 30 chr4 108272937 108273714 -94054633 - L2 LINE L2 -184 3129 2260 571 269 70 0 chr4 108274722 108274893 -94053454 - MER5A DNA MER1_type -4 185 3 414 0 0 0 chr4 108278891 108278937 -94049410 + (TA)n Simple_repeat Simple_repeat 2 47 0 24 0 0 0 chr4 108280403 108280427 -94047920 + AT_rich Low_complexity Low_complexity 1 24 0 234 327 93 19 chr4 108280964 108281071 -94047276 + L3 LINE CR1 858 972 -605 295 280 129 11 chr4 108283795 108283888 -94044459 - MIR SINE MIR -112 150 47 1989 133 7 14 chr4 108284412 108284706 -94043641 - AluSg SINE Alu -18 292 1 1572 166 19 11 chr4 108284824 108285095 -94043252 - AluSx SINE Alu -39 273 1 1783 140 13 49 chr4 108285315 108285622 -94042725 - AluSx SINE Alu -16 296 1 1029 148 43 6 chr4 108286130 108286292 -94042055 - AluSg/x SINE Alu -11 299 132 429 279 191 27 chr4 108286383 108286713 -94041634 + L2 LINE L2 2270 2653 -661 311 291 119 40 chr4 108288736 108288887 -94039460 - MER102a DNA MER1_type -1 329 167 280 243 173 54 chr4 108289227 108289412 -94038935 + L2 LINE L2 3082 3288 -25 22 35 0 0 chr4 108289658 108289687 -94038660 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 108291005 108291026 -94037321 + AT_rich Low_complexity Low_complexity 1 21 0 1355 69 173 10 chr4 108291053 108291255 -94037092 - AluY SINE Alu -17 294 60 1449 174 57 18 chr4 108291715 108291996 -94036351 + AluJo SINE Alu 12 303 -9 1817 149 38 0 chr4 108292035 108292324 -94036023 + AluSx SINE Alu 1 300 -12 579 144 21 0 chr4 108292409 108292506 -94035841 + BC200 scRNA scRNA 39 137 -63 648 206 53 15 chr4 108292792 108292923 -94035424 + FAM SINE Alu 5 140 -45 649 230 112 40 chr4 108293085 108293381 -94034966 - MER114 LTR ERV -1 647 331 295 261 59 8 chr4 108293435 108293554 -94034793 - MER114 LTR ERV -504 144 20 771 223 0 42 chr4 108293825 108293991 -94034356 - FAM SINE Alu -16 159 1 317 323 257 3 chr4 108294021 108294359 -94033988 - L2 LINE L2 -780 2534 2111 2003 112 10 50 chr4 108294937 108295240 -94033107 - AluSx SINE Alu -21 291 1 2163 106 17 3 chr4 108295684 108295977 -94032370 - AluSq SINE Alu -16 297 1 35 24 0 0 chr4 108295979 108296021 -94032326 + AT_rich Low_complexity Low_complexity 1 42 0 220 316 127 85 chr4 108297438 108297849 -94030498 - L2 LINE L2 0 3272 2845 2206 118 3 0 chr4 108299687 108299984 -94028363 + AluSx SINE Alu 2 299 -13 206 31 0 31 chr4 108301360 108301392 -94026955 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 969 75 87 0 chr4 108302271 108302432 -94025915 + L1MA3 LINE L1 6123 6297 -8 2141 67 0 94 chr4 108303286 108303615 -94024732 + AluY SINE Alu 1 298 -13 447 236 196 7 chr4 108303635 108303783 -94024564 + MIR SINE MIR 20 195 -67 472 224 112 0 chr4 108303890 108304015 -94024332 + MIR SINE MIR 12 150 -112 208 206 95 16 chr4 108305017 108305080 -94023267 - MIR SINE MIR -31 231 164 * 405 218 35 23 chr4 108305076 108305163 -94023184 + L2 LINE L2 3215 3302 -11 250 328 30 0 chr4 108305210 108305277 -94023070 - MIR SINE MIR -193 69 1 317 292 108 88 chr4 108307794 108308342 -94020005 + L1M2 LINE L1 710 1295 -5554 513 222 189 7 chr4 108309771 108309924 -94018423 - MER5A DNA MER1_type 0 189 9 324 290 93 31 chr4 108310083 108310276 -94018071 + MIR SINE MIR 56 260 -2 1863 104 72 4 chr4 108310333 108310612 -94017735 + AluSx SINE Alu 12 309 -3 1813 159 10 7 chr4 108311248 108311537 -94016810 + AluJb SINE Alu 1 290 -22 1157 174 29 25 chr4 108312093 108312369 -94015978 + L1MB7 LINE L1 5666 5942 -242 270 285 101 89 chr4 108312625 108313243 -94015104 - L2 LINE L2 -51 3221 2597 1824 163 42 0 chr4 108313392 108313681 -94014666 + AluJb SINE Alu 1 301 -11 1789 166 3 3 chr4 108315134 108315429 -94012918 + AluJb SINE Alu 1 295 -17 1100 165 11 0 chr4 108315437 108315619 -94012728 - AluJb SINE Alu -1 311 128 25 0 0 0 chr4 108315748 108315773 -94012574 + AT_rich Low_complexity Low_complexity 1 25 0 1444 178 132 0 chr4 108315816 108316119 -94012228 - MER2 DNA MER2_type 0 344 2 363 346 39 26 chr4 108316136 108316370 -94011977 + L3 LINE CR1 843 1079 -498 2834 199 56 42 chr4 108316379 108316811 -94011536 - L1ME1 LINE L1 -5 6161 5736 2304 102 3 3 chr4 108316811 108317116 -94011231 - AluSx SINE Alu -7 305 1 2834 199 56 42 chr4 108317116 108317554 -94010793 - L1ME1 LINE L1 -430 5736 5280 248 120 200 0 chr4 108317718 108317768 -94010579 - U7 snRNA snRNA -2 61 2 727 176 59 27 chr4 108317856 108318043 -94010304 - MER63B DNA MER1_type 0 434 242 496 213 19 0 chr4 108318055 108318163 -94010184 + Tigger1 DNA MER2_type 30 139 -2279 * 629 103 89 89 chr4 108318159 108318210 -94010137 + Tigger1 DNA MER2_type 2200 2250 -168 1435 169 47 68 chr4 108318210 108318339 -94010008 + AluJb SINE Alu 1 131 -181 2379 59 0 10 chr4 108318339 108318629 -94009718 + AluY SINE Alu 1 287 -24 1435 169 47 68 chr4 108318629 108318795 -94009552 + AluJb SINE Alu 131 290 -22 629 103 89 89 chr4 108318795 108318889 -94009458 + Tigger1 DNA MER2_type 2249 2345 -73 671 218 68 34 chr4 108318920 108319154 -94009193 - MER63B DNA MER1_type -189 247 6 219 139 0 0 chr4 108319477 108319513 -94008834 + (A)n Simple_repeat Simple_repeat 1 36 0 1809 167 3 19 chr4 108319929 108320240 -94008107 - AluJb SINE Alu -6 306 1 4451 146 110 7 chr4 108320330 108321504 -94006843 + L1MA4A LINE L1 5004 6292 -11 1240 105 12 17 chr4 108321528 108321700 -94006647 + AluSg/x SINE Alu 126 296 -16 210 250 39 0 chr4 108322378 108322430 -94005917 - MIR SINE MIR -70 138 85 1648 173 20 24 chr4 108322937 108323232 -94005115 + AluJo SINE Alu 2 295 -17 266 274 27 0 chr4 108323357 108323430 -94004917 + ERVL LTR ERVL 2963 3037 -2727 1672 95 187 0 chr4 108323495 108323736 -94004611 + AluSx SINE Alu 1 286 -26 814 299 35 46 chr4 108323765 108324235 -94004112 + ERVL LTR ERVL 3167 3633 -2021 1060 276 78 58 chr4 108324250 108324852 -94003495 - ERVL LTR ERVL -2824 2940 2327 756 197 0 0 chr4 108324870 108325002 -94003345 - FLAM_C SINE Alu -11 132 1 791 294 62 26 chr4 108325002 108325342 -94003005 - ERVL LTR ERVL -3422 2342 1991 2396 70 7 7 chr4 108325365 108325666 -94002681 + AluY SINE Alu 1 301 -10 891 171 188 18 chr4 108325672 108325865 -94002482 + AluSg/x SINE Alu 83 304 0 723 175 96 24 chr4 108325928 108326094 -94002253 - MER5B DNA MER1_type 0 178 1 2073 144 3 0 chr4 108326404 108326710 -94001637 - AluSx SINE Alu -2 310 4 1848 162 10 26 chr4 108327258 108327566 -94000781 - AluJo SINE Alu -9 303 1 2093 139 0 3 chr4 108327906 108328209 -94000138 - AluJb SINE Alu -10 302 1 1585 170 26 39 chr4 108328232 108328562 -93999785 - AluJo SINE Alu 0 312 5 1113 58 0 0 chr4 108328568 108328707 -93999640 - MER85 DNA T2_type 0 139 1 1961 147 3 10 chr4 108328851 108328985 -93999362 + AluJo SINE Alu 1 134 -178 2244 117 0 0 chr4 108328985 108329292 -93999055 + AluSq SINE Alu 1 307 -6 1961 147 3 10 chr4 108329292 108329449 -93998898 + AluJo SINE Alu 134 290 -22 369 43 0 0 chr4 108329536 108329583 -93998764 + (TG)n Simple_repeat Simple_repeat 2 48 0 2004 154 13 3 chr4 108329702 108330008 -93998339 + AluJb SINE Alu 1 309 -3 988 241 80 87 chr4 108330029 108330920 -93997427 + L1ME3A LINE L1 5155 6040 -130 22 0 0 0 chr4 108331316 108331338 -93997009 + AT_rich Low_complexity Low_complexity 1 22 0 2602 83 6 8 chr4 108331343 108331706 -93996641 + L1PB1 LINE L1 5788 6149 -2 593 237 105 23 chr4 108331732 108331990 -93996357 + MLT1H LTR MaLR 1 243 -306 274 198 66 22 chr4 108332052 108332143 -93996204 + MLT1G1 LTR MaLR 495 589 -6 1142 259 75 67 chr4 108332194 108332272 -93996075 + MLT1J LTR MaLR 1 77 -434 2369 93 0 10 chr4 108332272 108332584 -93995763 - AluSx SINE Alu -2 310 2 1142 259 75 67 chr4 108332584 108332969 -93995378 + MLT1J LTR MaLR 77 468 -43 293 287 0 0 chr4 108333026 108333113 -93995234 + (TA)n Simple_repeat Simple_repeat 2 88 0 242 372 0 24 chr4 108333343 108333550 -93994797 - L1ME LINE L1 -460 5661 5460 * 1176 237 110 36 chr4 108333548 108333760 -93994587 + L1MC2 LINE L1 5381 5576 -2232 1532 18 0 0 chr4 108333760 108333931 -93994416 - AluYa5 SINE Alu 0 311 141 1176 237 110 36 chr4 108333931 108334220 -93994127 + L1MC2 LINE L1 5576 5919 -1889 315 248 149 0 chr4 108334480 108334601 -93993746 + MIR SINE MIR 118 256 -6 1274 246 75 7 chr4 108334910 108335336 -93993011 - L1M4 LINE L1 -3459 2751 2297 1541 167 40 25 chr4 108336072 108336348 -93991999 - AluJo SINE Alu -30 282 3 395 307 116 22 chr4 108336348 108336573 -93991774 - L2 LINE L2 -5 3308 3063 1846 167 6 10 chr4 108336711 108337022 -93991325 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr4 108337189 108337218 -93991129 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 108337356 108337378 -93990969 + AT_rich Low_complexity Low_complexity 1 22 0 1556 172 60 19 chr4 108337477 108337843 -93990504 + L1MC2 LINE L1 5939 6319 -25 23 33 0 0 chr4 108338299 108338329 -93990018 + AT_rich Low_complexity Low_complexity 1 30 0 2110 115 0 0 chr4 108338341 108338619 -93989728 - AluSg SINE Alu -32 278 1 250 235 0 0 chr4 108338683 108338734 -93989613 - MER58A DNA MER1_type -21 86 36 211 297 77 22 chr4 108338773 108338864 -93989483 + MIR SINE MIR 167 262 0 4424 234 103 44 chr4 108339417 108340020 -93988327 - L1M4 LINE L1 -4171 2040 1474 421 240 10 10 chr4 108340020 108340124 -93988223 - U13 snRNA snRNA 0 104 1 4424 234 103 44 chr4 108340124 108340475 -93987872 - L1M4 LINE L1 -4737 1474 1145 2366 77 0 7 chr4 108340475 108340773 -93987574 - AluY SINE Alu -15 296 1 4424 234 103 44 chr4 108340773 108341027 -93987320 - L1M4 LINE L1 -5066 1145 908 270 0 0 0 chr4 108341027 108341057 -93987290 + (TG)n Simple_repeat Simple_repeat 2 31 0 4424 234 103 44 chr4 108341057 108342004 -93986343 - L1M4 LINE L1 -5303 908 1 575 210 0 0 chr4 108342554 108342654 -93985693 - FRAM SINE Alu -32 144 45 24 32 0 0 chr4 108342938 108342969 -93985378 + AT_rich Low_complexity Low_complexity 1 31 0 897 262 46 7 chr4 108343086 108343391 -93984956 - HAL1 LINE L1 -695 1812 1496 1799 172 23 64 chr4 108343410 108343657 -93984690 - MSTB1 LTR MaLR 0 432 176 2388 100 0 0 chr4 108343657 108343967 -93984380 - AluSx SINE Alu -2 310 1 1799 172 23 64 chr4 108343967 108344115 -93984232 - MSTB1 LTR MaLR -256 176 54 2106 129 10 0 chr4 108344115 108344410 -93983937 - AluSx SINE Alu -14 298 1 1799 172 23 64 chr4 108344410 108344449 -93983898 - MSTB1 LTR MaLR -378 54 15 422 269 269 16 chr4 108344694 108344876 -93983471 - MIR SINE MIR -30 232 5 721 300 65 23 chr4 108345626 108346150 -93982197 + L1ME3 LINE L1 4615 5160 -986 2312 93 13 0 chr4 108346175 108346475 -93981872 + AluSg SINE Alu 1 304 -6 237 266 55 62 chr4 108346605 108346733 -93981614 - L2 LINE L2 -1000 2314 2188 262 256 251 23 chr4 108347299 108347518 -93980829 + L1ME3 LINE L1 5870 6138 -24 1024 191 10 30 chr4 108348560 108348759 -93979588 + AluJo SINE Alu 85 279 -33 180 0 0 0 chr4 108348759 108348779 -93979568 + (CAA)n Simple_repeat Simple_repeat 2 21 0 885 119 131 0 chr4 108348810 108348978 -93979369 - MER30 DNA MER1_type -40 190 1 2308 73 10 0 chr4 108349035 108349336 -93979011 - AluSg SINE Alu -6 304 1 29 0 0 0 chr4 108349498 108349527 -93978820 + AT_rich Low_complexity Low_complexity 1 29 0 27 73 0 0 chr4 108349921 108349976 -93978371 + GC_rich Low_complexity Low_complexity 1 55 0 355 278 116 116 chr4 108350930 108351441 -93976906 + L3 LINE CR1 1055 1565 -12 24 0 0 0 chr4 108351485 108351509 -93976838 + AT_rich Low_complexity Low_complexity 1 24 0 2026 109 41 3 chr4 108353041 108353334 -93975013 - AluSx SINE Alu -8 304 1 22 56 0 0 chr4 108353644 108353680 -93974667 + AT_rich Low_complexity Low_complexity 1 36 0 2226 124 21 16 chr4 108353821 108354193 -93974154 - THE1C LTR MaLR -1 374 1 1668 179 0 27 chr4 108354238 108354539 -93973808 - AluJb SINE Alu -19 293 1 406 222 20 0 chr4 108354614 108354713 -93973634 + FLAM_A SINE Alu 35 135 -7 2121 132 0 25 chr4 108354805 108355123 -93973224 + AluSx SINE Alu 1 310 -2 2007 138 34 0 chr4 108355124 108355451 -93972896 + L1PA16 LINE L1 5820 6157 -9 570 179 40 54 chr4 108355469 108355668 -93972679 + MLT1C LTR MaLR 167 421 -46 413 397 42 32 chr4 108356055 108356433 -93971914 + L2 LINE L2 2854 3235 -37 850 298 58 31 chr4 108356829 108357188 -93971159 + L2 LINE L2 2943 3311 -2 229 329 66 0 chr4 108357283 108357359 -93970988 - L2 LINE L2 -20 3252 3172 1707 145 82 57 chr4 108357387 108357432 -93970915 - THE1C LTR MaLR 0 375 333 2127 129 0 7 chr4 108357432 108357726 -93970621 + AluSc SINE Alu 1 292 -17 1707 145 82 57 chr4 108357726 108358046 -93970301 - THE1C LTR MaLR -42 333 1 8922 116 83 32 chr4 108358046 108359118 -93969229 - THE1C-int LTR MaLR 0 1580 407 2000 105 18 7 chr4 108359118 108359394 -93968953 - AluSc SINE Alu -30 279 1 8922 116 83 32 chr4 108359394 108359824 -93968523 - THE1C-int LTR MaLR -1173 407 1 1662 152 70 9 chr4 108359866 108360196 -93968151 - THE1C LTR MaLR -25 350 1 37 52 0 0 chr4 108360204 108360262 -93968085 + AT_rich Low_complexity Low_complexity 1 58 0 347 254 63 24 chr4 108360323 108360449 -93967898 + L1ME2 LINE L1 5985 6115 -49 2119 110 31 0 chr4 108360465 108360755 -93967592 + AluSg SINE Alu 1 299 -11 259 250 62 0 chr4 108360818 108360882 -93967465 - L2 LINE L2 -38 3234 3167 2170 122 0 6 chr4 108360896 108361208 -93967139 - AluSx SINE Alu -2 310 1 1138 134 12 12 chr4 108361484 108361655 -93966692 + AluSg/x SINE Alu 125 295 -17 2111 104 17 10 chr4 108361675 108361972 -93966375 + AluSx SINE Alu 1 299 -13 2030 137 46 23 chr4 108362152 108362545 -93965802 + L1MA4 LINE L1 5895 6296 -4 1943 154 3 0 chr4 108362876 108363169 -93965178 + AluSq SINE Alu 3 296 -17 207 204 111 0 chr4 108363275 108363329 -93965018 - L2 LINE L2 -7 3265 3206 753 198 34 23 chr4 108363527 108363704 -93964643 + MER3 DNA MER1_type 2 180 -29 2096 104 0 7 chr4 108363704 108364006 -93964341 - AluSg SINE Alu 0 304 5 2023 193 63 41 chr4 108364013 108364522 -93963825 + MER74B LTR ERVL 56 575 -47 209 361 16 0 chr4 108364674 108364735 -93963612 - L2 LINE L2 -62 3251 3190 399 322 26 20 chr4 108365059 108365211 -93963136 + MIR SINE MIR 24 176 -86 2267 86 7 13 chr4 108367169 108367473 -93960874 + AluSg SINE Alu 1 302 -8 1823 180 3 16 chr4 108367562 108367873 -93960474 - AluSx SINE Alu 0 312 6 23 33 0 0 chr4 108367932 108367962 -93960385 + AT_rich Low_complexity Low_complexity 1 30 0 264 30 0 0 chr4 108369012 108369045 -93959302 + (TG)n Simple_repeat Simple_repeat 2 34 0 982 180 28 90 chr4 108369236 108369491 -93958856 + MER8 DNA MER2_type 1 239 0 523 174 25 66 chr4 108369614 108369735 -93958612 + FLAM_A SINE Alu 1 116 -17 222 260 26 39 chr4 108369959 108370036 -93958311 - MIR SINE MIR 0 262 187 1841 166 7 10 chr4 108371522 108371830 -93956517 + AluJb SINE Alu 1 307 -5 1793 154 3 7 chr4 108373049 108373334 -93955013 - AluJo SINE Alu -26 286 3 2272 114 3 13 chr4 108373973 108374288 -93954059 + AluSx SINE Alu 1 312 0 235 294 0 0 chr4 108374334 108374436 -93953911 + L1P LINE L1 3370 3471 -2675 358 278 66 75 chr4 108374494 108374618 -93953729 + L1 LINE L1 3563 3687 -2459 1945 112 105 0 chr4 108374618 108374895 -93953452 + AluSx SINE Alu 1 306 -6 358 278 66 75 chr4 108374895 108375041 -93953306 + L1 LINE L1 3687 3836 -2310 245 331 19 6 chr4 108375066 108375223 -93953124 + L1P LINE L1 3865 4023 -2123 339 301 237 19 chr4 108375495 108375651 -93952696 + L1 LINE L1 4335 4456 -1690 1469 168 95 7 chr4 108375651 108375925 -93952422 + AluJb SINE Alu 1 298 -14 339 301 237 19 chr4 108375925 108376034 -93952313 + L1 LINE L1 4456 4658 -1488 247 288 45 0 chr4 108376621 108376687 -93951660 - L2 LINE L2 -1393 1921 1853 1978 192 40 24 chr4 108376838 108377337 -93951010 + LTR55 LTR ERV 5 511 -37 367 252 37 15 chr4 108377385 108377520 -93950827 + L1M4 LINE L1 2441 2578 -3568 1125 92 27 22 chr4 108377525 108377709 -93950638 - MER61B LTR ERV1 -240 185 1 21 0 0 0 chr4 108379428 108379449 -93948898 + AT_rich Low_complexity Low_complexity 1 21 0 1849 99 41 73 chr4 108379699 108380013 -93948334 - AluY SINE Alu -7 304 1 54 40 0 0 chr4 108380066 108380141 -93948206 + AT_rich Low_complexity Low_complexity 1 75 0 36 0 0 21 chr4 108380370 108380402 -93947945 + AT_rich Low_complexity Low_complexity 1 33 -13 2285 94 0 0 chr4 108380402 108380688 -93947659 - AluSg SINE Alu -24 286 1 36 0 0 21 chr4 108380688 108380702 -93947645 + AT_rich Low_complexity Low_complexity 33 46 0 24 32 0 0 chr4 108381441 108381472 -93946875 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr4 108381908 108381934 -93946413 + AT_rich Low_complexity Low_complexity 1 26 0 487 316 116 5 chr4 108382768 108382983 -93945364 + MIR SINE MIR 5 243 -19 361 302 9 9 chr4 108383571 108383687 -93944660 - MIR SINE MIR 0 262 147 24 32 0 0 chr4 108383919 108383950 -93944397 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 108384010 108384031 -93944316 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 108384280 108384310 -93944037 + AT_rich Low_complexity Low_complexity 1 30 0 663 274 55 30 chr4 108384326 108384563 -93943784 - MIR SINE MIR -3 259 17 301 233 85 93 chr4 108384774 108384903 -93943444 - L2 LINE L2 -7 3265 3138 1997 148 3 7 chr4 108385039 108385336 -93943011 - AluJb SINE Alu -16 296 1 1695 191 0 25 chr4 108385538 108385678 -93942669 + AluJo SINE Alu 1 143 -169 2373 96 0 7 chr4 108385678 108385981 -93942366 + AluSx SINE Alu 3 303 -9 1695 191 0 25 chr4 108385981 108386160 -93942187 + AluJo SINE Alu 143 312 0 816 137 17 0 chr4 108386182 108386334 -93942013 - AluSg/x SINE Alu 0 315 162 21 0 0 0 chr4 108386899 108386920 -93941427 + AT_rich Low_complexity Low_complexity 1 21 0 2034 125 14 0 chr4 108386920 108387208 -93941139 - AluSx SINE Alu -20 292 1 31 76 0 0 chr4 108387427 108387493 -93940854 + AT_rich Low_complexity Low_complexity 1 66 0 1656 176 26 17 chr4 108387697 108387999 -93940348 - AluJo SINE Alu -7 305 1 311 258 8 33 chr4 108388967 108389087 -93939260 + L1MC/D LINE L1 4590 4706 -1440 228 184 0 0 chr4 108389334 108389383 -93938964 + (TA)n Simple_repeat Simple_repeat 1 49 0 238 220 34 0 chr4 108389435 108389494 -93938853 + (TATG)n Simple_repeat Simple_repeat 2 62 0 391 254 79 118 chr4 108389496 108389811 -93938536 + L1MC/D LINE L1 4960 5262 -884 471 219 143 84 chr4 108389821 108390158 -93938189 + L1MC/D LINE L1 5281 5597 -787 778 188 0 0 chr4 108390158 108390286 -93938061 + FLAM_C SINE Alu 2 129 -4 471 219 143 84 chr4 108390286 108390318 -93938029 + L1MC/D LINE L1 5597 5626 -758 2018 122 0 0 chr4 108390318 108390589 -93937758 + AluSq SINE Alu 22 292 -21 471 219 143 84 chr4 108390589 108390676 -93937671 + L1MC/D LINE L1 5626 5766 -618 1714 126 61 29 chr4 108390813 108391091 -93937256 - AluSq SINE Alu -26 287 1 26 93 0 0 chr4 108391112 108391187 -93937160 + AT_rich Low_complexity Low_complexity 1 75 0 24 53 0 0 chr4 108391579 108391617 -93936730 + AT_rich Low_complexity Low_complexity 1 38 0 2051 141 0 0 chr4 108392829 108393128 -93935219 + AluSx SINE Alu 3 301 -11 23 33 0 0 chr4 108393398 108393428 -93934919 + AT_rich Low_complexity Low_complexity 1 30 0 1522 150 98 7 chr4 108393574 108393860 -93934487 + AluJo SINE Alu 1 312 0 378 325 51 36 chr4 108393871 108394154 -93934193 + L1 LINE L1 173 692 -5611 4563 241 63 26 chr4 108394403 108394874 -93933473 + L1 LINE L1 798 1250 -5132 2947 176 19 74 chr4 108394874 108395605 -93932742 - LTR8 LTR ERV1 0 691 1 4563 241 63 26 chr4 108395605 108396357 -93931990 + L1 LINE L1 1250 1973 -4409 1694 179 46 13 chr4 108396357 108396659 -93931688 - AluJo SINE Alu 0 312 1 4563 241 63 26 chr4 108396659 108397799 -93930548 + L1 LINE L1 1973 3112 -3270 1819 225 24 111 chr4 108397819 108398395 -93929952 + MLT2B3 LTR ERVL 5 486 -34 226 226 0 0 chr4 108398396 108398449 -93929898 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 344 141 0 5 chr4 108398449 108398517 -93929830 + MLT2B2 LTR ERVL 455 515 0 1662 247 109 3 chr4 108398519 108398770 -93929577 + L1 LINE L1 3129 3352 -3030 2174 94 9 28 chr4 108398770 108399089 -93929258 + AluSp SINE Alu 1 313 0 1662 247 109 3 chr4 108399089 108399415 -93928932 + L1 LINE L1 3352 3767 -2615 455 169 92 56 chr4 108399397 108399493 -93928854 + L1 LINE L1 5466 5570 -812 * 1735 198 25 8 chr4 108399493 108399852 -93928495 + MLT1A1 LTR MaLR 1 365 0 455 169 92 56 chr4 108399852 108399897 -93928450 + L1 LINE L1 5570 5612 -770 2630 143 26 85 chr4 108399908 108400413 -93927934 - THE1-int LTR MaLR -755 825 351 38192 84 10 7 chr4 108400413 108406545 -93921802 + L1PA6 LINE L1 2 6152 -2 13216 64 7 7 chr4 108406696 108409224 -93919123 + L1PA6 LINE L1 3606 6153 -1 2321 144 3 0 chr4 108409224 108409592 -93918755 - THE1-int LTR MaLR -1206 374 6 1824 182 30 44 chr4 108409596 108410157 -93918190 - MLT2A2 LTR ERVL 0 554 1 513 253 50 4 chr4 108410249 108410392 -93917955 + MIR SINE MIR 3 148 -60 2036 134 7 3 chr4 108410505 108410804 -93917543 - AluSx SINE Alu -12 300 1 365 282 168 33 chr4 108411017 108411411 -93916936 + L1ME LINE L1 5283 5729 -392 1883 119 61 14 chr4 108411414 108411691 -93916656 - AluSx SINE Alu -22 290 1 28 0 0 0 chr4 108411691 108411719 -93916628 + AT_rich Low_complexity Low_complexity 1 28 0 2404 80 0 7 chr4 108411925 108412225 -93916122 + AluY SINE Alu 1 298 -13 342 32 63 32 chr4 108412278 108412341 -93916006 + GA-rich Low_complexity Low_complexity 1 65 0 637 228 96 77 chr4 108414077 108414401 -93913946 + LTR16A1 LTR ERVL 1 330 -127 235 154 0 0 chr4 108414401 108414440 -93913907 - MER5B DNA MER1_type 0 178 140 869 220 273 3 chr4 108414441 108414727 -93913620 - MLT1F LTR MaLR 0 542 180 24 53 0 0 chr4 108414794 108414832 -93913515 + AT_rich Low_complexity Low_complexity 1 38 0 1127 128 0 0 chr4 108414897 108415053 -93913294 - AluSq SINE Alu -157 156 1 296 180 98 66 chr4 108415054 108415176 -93913171 + L1M4 LINE L1 4533 4658 -1488 333 311 138 48 chr4 108415235 108415499 -93912848 + L1M4 LINE L1 4747 5063 -1083 1717 124 124 0 chr4 108415499 108415766 -93912581 + AluSg SINE Alu 1 300 -10 333 311 138 48 chr4 108415766 108415913 -93912434 + L1M4 LINE L1 5063 5195 -951 623 288 65 54 chr4 108416122 108416490 -93911857 + L1M4 LINE L1 5292 5626 -495 241 250 60 35 chr4 108416522 108416638 -93911709 + L1M4 LINE L1 5768 5886 -288 14333 210 28 48 chr4 108416873 108418085 -93910262 + L1P4 LINE L1 1225 2460 -4356 2116 134 0 0 chr4 108418085 108418383 -93909964 - AluSg SINE Alu -12 298 1 14333 210 28 48 chr4 108418383 108418427 -93909920 + L1P4 LINE L1 2460 2503 -4313 2343 93 3 0 chr4 108418427 108418728 -93909619 + AluSc SINE Alu 1 302 -7 14333 210 28 48 chr4 108418728 108422499 -93905848 + L1P4 LINE L1 2503 6166 -650 1028 121 0 0 chr4 108422503 108422644 -93905703 + AluSg/x SINE Alu 162 302 -8 6089 148 18 27 chr4 108422663 108423049 -93905298 + L1PB1 LINE L1 4012 4400 -1751 266 0 29 0 chr4 108423049 108423083 -93905264 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6089 148 18 27 chr4 108423083 108424492 -93903855 + L1PB1 LINE L1 4400 5786 -365 288 0 0 0 chr4 108424492 108424524 -93903823 + (CA)n Simple_repeat Simple_repeat 2 33 0 6089 148 18 27 chr4 108424524 108424887 -93903460 + L1PB1 LINE L1 5786 6151 0 472 94 0 0 chr4 108424886 108424950 -93903397 + L1PA15 LINE L1 5724 5787 -379 * 2535 138 5 5 chr4 108424980 108425386 -93902961 + L1PA15 LINE L1 5760 6165 0 212 242 117 101 chr4 108425526 108425774 -93902573 - L2 LINE L2 -1377 1937 1686 192 125 0 0 chr4 108425816 108425848 -93902499 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 35 0 0 0 chr4 108426506 108426541 -93901806 + AT_rich Low_complexity Low_complexity 1 35 0 1281 99 6 6 chr4 108427290 108427471 -93900876 - AluSg/x SINE Alu -6 306 126 274 320 147 25 chr4 108427877 108428210 -93900137 - L2 LINE L2 -298 2974 2597 1492 167 86 4 chr4 108428369 108428638 -93899709 - AluJo SINE Alu -21 291 1 3433 152 9 2 chr4 108428670 108429230 -93899117 - MER6 DNA MER2_type 0 865 302 770 199 165 10 chr4 108429231 108429308 -93899039 + L1 LINE L1 3599 3663 -2483 384 22 0 0 chr4 108429308 108429353 -93898994 + (CA)n Simple_repeat Simple_repeat 1 45 0 770 199 165 10 chr4 108429353 108429481 -93898866 + L1 LINE L1 3663 3836 -2310 * 2656 146 54 1 chr4 108429479 108429949 -93898398 + L1PA16 LINE L1 5658 6146 -20 29 0 0 0 chr4 108429998 108430027 -93898320 + AT_rich Low_complexity Low_complexity 1 29 0 2250 103 3 7 chr4 108430663 108430973 -93897374 + AluSx SINE Alu 1 309 -3 1227 296 76 48 chr4 108431644 108431697 -93896650 + L1MEd LINE L1 324 374 -5745 2005 136 0 3 chr4 108431697 108432027 -93896320 + AluSq SINE Alu 1 329 0 1227 296 76 48 chr4 108432027 108432879 -93895468 + L1MEd LINE L1 374 1256 -4863 189 0 0 0 chr4 108432946 108432967 -93895380 + (T)n Simple_repeat Simple_repeat 1 21 0 4450 123 13 9 chr4 108432969 108433716 -93894631 - L1HS LINE L1 -4 6151 5402 2566 240 24 41 chr4 108434439 108434810 -93893537 - L1M4 LINE L1 -2850 3296 2920 1715 181 7 4 chr4 108434810 108435120 -93893227 - AluJb SINE Alu 0 311 1 2566 240 24 41 chr4 108435120 108435568 -93892779 - L1M4 LINE L1 -3226 2920 2491 496 233 60 0 chr4 108435568 108435684 -93892663 - FLAM_A SINE Alu -10 123 1 2566 240 24 41 chr4 108435684 108435791 -93892556 - L1M4 LINE L1 -3655 2491 2384 565 176 75 75 chr4 108435959 108436118 -93892229 + MSTB2 LTR MaLR 299 457 0 3553 237 73 36 chr4 108436119 108437520 -93890827 - L1M4 LINE L1 -1741 4405 2953 21 57 0 0 chr4 108437530 108437565 -93890782 + AT_rich Low_complexity Low_complexity 1 35 0 10230 123 50 24 chr4 108437863 108439567 -93888780 - L1P LINE L1 -4396 1750 2 2813 217 50 8 chr4 108439587 108440325 -93888022 - L1M4 LINE L1 -969 5571 4803 1854 196 90 17 chr4 108440330 108440743 -93887604 + MSTB2 LTR MaLR 15 457 0 4978 209 50 110 chr4 108440743 108442500 -93885847 + MSTB2-int LTR MaLR 1 1651 0 706 216 135 5 chr4 108442504 108442689 -93885658 + MSTB2 LTR MaLR 16 224 -233 15597 72 1 1 chr4 108442791 108444904 -93883443 + L1P LINE L1 1752 3865 -2281 1232 117 45 0 chr4 108444904 108445083 -93883264 - AluSq SINE Alu -126 187 1 763 279 20 12 chr4 108445084 108445328 -93883019 + L1ME1 LINE L1 5916 6161 -5 30 0 0 0 chr4 108445426 108445456 -93882891 + AT_rich Low_complexity Low_complexity 1 30 0 258 180 0 40 chr4 108446192 108446242 -93882105 - Alu SINE Alu -253 48 1 521 315 80 26 chr4 108446919 108447230 -93881117 + L2 LINE L2 1915 2242 -1072 1857 97 97 7 chr4 108447240 108447519 -93880828 + AluSx SINE Alu 1 304 -8 258 32 0 0 chr4 108447519 108447550 -93880797 + (TA)n Simple_repeat Simple_repeat 2 32 0 399 324 0 9 chr4 108447671 108447776 -93880571 - LTR67 LTR ERVL -405 152 49 1533 181 10 38 chr4 108447798 108448112 -93880235 + AluJo SINE Alu 1 305 -7 1376 275 116 31 chr4 108448172 108448840 -93879507 - L1MDa LINE L1 -2364 4176 3567 2277 100 0 13 chr4 108448840 108449149 -93879198 - AluSx SINE Alu -3 309 5 1376 275 116 31 chr4 108449149 108450039 -93878308 - L1MDa LINE L1 -2973 3567 2484 6958 203 23 28 chr4 108450796 108453905 -93874442 + L1MC1 LINE L1 3161 6251 -82 6480 85 0 5 chr4 108453906 108454860 -93873487 - L1PA11 LINE L1 0 6174 5203 500 191 0 0 chr4 108454860 108454952 -93873395 + L1MC1 LINE L1 6239 6332 -1 2865 50 8 0 chr4 108455818 108456180 -93872167 - L1P2 LINE L1 -479 5676 5312 1425 198 60 25 chr4 108456280 108456599 -93871748 + MER68 LTR ERV1 163 492 -70 2444 264 96 14 chr4 108456990 108458042 -93870305 + L1M4c LINE L1 697 1834 -4550 321 89 0 0 chr4 108458044 108458089 -93870258 + (TG)n Simple_repeat Simple_repeat 2 46 0 1007 219 9 42 chr4 108458287 108458362 -93869985 + AluJo SINE Alu 39 115 -197 2422 126 78 0 chr4 108458362 108458759 -93869588 + MSTA LTR MaLR 1 428 0 1007 219 9 42 chr4 108458759 108458898 -93869449 + AluJo SINE Alu 115 246 -66 2397 71 0 3 chr4 108458924 108459220 -93869127 + AluY SINE Alu 1 295 -16 553 271 78 11 chr4 108459221 108459490 -93868857 + L1M4c LINE L1 2274 2560 -4003 237 178 0 0 chr4 108459503 108459548 -93868799 + (CA)n Simple_repeat Simple_repeat 2 46 0 257 198 60 86 chr4 108459599 108459715 -93868632 + MIR SINE MIR 95 207 -55 362 184 110 18 chr4 108459996 108460105 -93868242 + MER5C DNA MER1_type 18 136 -188 714 126 0 0 chr4 108460168 108460279 -93868068 + L1PA13 LINE L1 6042 6152 -11 240 169 0 51 chr4 108460292 108460351 -93867996 + MER5C DNA MER1_type 268 323 -1 33 73 0 0 chr4 108460481 108460549 -93867798 + AT_rich Low_complexity Low_complexity 1 68 0 22 0 0 0 chr4 108460746 108460768 -93867579 + AT_rich Low_complexity Low_complexity 1 22 0 2487 77 3 0 chr4 108461003 108461314 -93867033 - AluSp SINE Alu -1 312 1 213 39 0 0 chr4 108461829 108461855 -93866492 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 190 120 0 60 chr4 108461877 108461927 -93866420 + (TTTCC)n Simple_repeat Simple_repeat 4 50 0 760 29 10 39 chr4 108462004 108462108 -93866239 - L1PA7 LINE L1 -4 6150 6050 916 192 0 0 chr4 108463939 108464090 -93864257 - AluJb SINE Alu -26 286 136 2316 99 0 10 chr4 108464092 108464396 -93863951 - AluSx SINE Alu -9 303 3 5653 191 72 73 chr4 108464396 108466606 -93861741 - L1MCa LINE L1 -4241 2185 1 21 36 0 0 chr4 108468585 108468613 -93859734 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 108469686 108469710 -93858637 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr4 108470826 108470862 -93857485 + AT_rich Low_complexity Low_complexity 1 36 0 1362 142 183 22 chr4 108471332 108471655 -93856692 - THE1C LTR MaLR 0 375 1 9818 107 55 14 chr4 108471655 108473172 -93855175 - THE1C-int LTR MaLR 0 1580 1 1186 100 92 37 chr4 108473172 108473408 -93854939 - THE1C LTR MaLR -3 372 139 221 385 7 14 chr4 108473512 108473660 -93854687 + CT-rich Low_complexity Low_complexity 1 147 0 445 245 31 44 chr4 108473815 108473974 -93854373 - L1MC/D LINE L1 -672 5449 5305 337 309 140 56 chr4 108474197 108474344 -93854003 - L1MC/D LINE L1 -951 5195 5062 1717 124 124 0 chr4 108474344 108474611 -93853736 - AluSg SINE Alu -10 300 1 337 309 140 56 chr4 108474611 108474877 -93853470 - L1MC/D LINE L1 -1084 5062 4747 296 180 98 66 chr4 108474936 108475058 -93853289 - L1MC/D LINE L1 -1488 4658 4533 1067 147 0 0 chr4 108475059 108475215 -93853132 + AluSq SINE Alu 1 156 -157 24 53 0 0 chr4 108475280 108475318 -93853029 + AT_rich Low_complexity Low_complexity 1 38 0 869 220 273 3 chr4 108475385 108475671 -93852676 + MLT1F LTR MaLR 180 542 0 235 154 0 0 chr4 108475672 108475711 -93852636 + MER5B DNA MER1_type 140 178 0 637 228 96 77 chr4 108475711 108476035 -93852312 - LTR16A1 LTR ERVL -127 330 1 342 32 63 32 chr4 108477771 108477834 -93850513 + CT-rich Low_complexity Low_complexity 1 65 0 2404 80 0 7 chr4 108477887 108478187 -93850160 - AluY SINE Alu -13 298 1 28 0 0 0 chr4 108478393 108478421 -93849926 + AT_rich Low_complexity Low_complexity 1 28 0 1868 119 58 14 chr4 108478421 108478699 -93849648 + AluSx SINE Alu 1 290 -22 378 282 168 30 chr4 108478702 108479095 -93849252 - L1ME LINE L1 -392 5729 5283 2019 131 10 3 chr4 108479308 108479606 -93848741 + AluSx SINE Alu 1 300 -12 516 253 50 4 chr4 108479719 108479862 -93848485 - MIR SINE MIR -60 148 3 1824 182 30 44 chr4 108479954 108480515 -93847832 + MLT2A2 LTR ERVL 1 554 0 2198 144 3 0 chr4 108480519 108480887 -93847460 + THE1-int LTR MaLR 6 374 -1206 13469 56 16 2 chr4 108480887 108483417 -93844930 - L1PA6 LINE L1 -1 6153 3606 14544 24 0 1 chr4 108483568 108486047 -93842300 - L1PA4 LINE L1 -2 6153 3674 225 316 84 31 chr4 108486131 108486356 -93841991 + HAL1 LINE L1 1507 1743 -764 322 262 26 110 chr4 108486534 108486671 -93841676 + L1M4b LINE L1 91 209 -6650 2435 68 53 6 chr4 108486671 108487010 -93841337 + THE1A LTR MaLR 1 355 0 322 262 26 110 chr4 108487010 108487063 -93841284 + L1M4b LINE L1 209 265 -6594 771 86 0 0 chr4 108487284 108487502 -93840845 + L1PA8 LINE L1 6066 6283 0 231 75 50 0 chr4 108487545 108487585 -93840762 + MER68 LTR ERV1 116 157 -405 268 277 91 6 chr4 108487971 108488132 -93840215 + MIR SINE MIR 23 198 -64 689 234 5 49 chr4 108488137 108488321 -93840026 - MIR SINE MIR -34 228 53 2401 250 74 34 chr4 108488343 108489076 -93839271 - L1ME LINE L1 -652 5581 4766 1745 166 20 27 chr4 108489076 108489371 -93838976 - AluJo SINE Alu -19 293 1 2401 250 74 34 chr4 108489371 108489941 -93838406 - L1ME LINE L1 -1467 4766 4220 431 259 90 13 chr4 108490007 108490252 -93838095 - L1MDa LINE L1 -4549 1666 1460 4284 154 38 56 chr4 108490284 108491142 -93837205 - L1MB3 LINE L1 -10 6173 5329 1364 165 124 0 chr4 108491142 108491409 -93836938 - AluJo SINE Alu -11 301 2 4284 154 38 56 chr4 108491409 108491721 -93836626 - L1MB3 LINE L1 -854 5329 5013 1676 149 39 82 chr4 108492102 108492491 -93835856 - THE1C LTR MaLR 0 375 4 922 63 21 21 chr4 108492494 108492637 -93835710 - THE1C-int LTR MaLR 0 1580 1438 8333 132 68 6 chr4 108492637 108494088 -93834259 - THE1C-int LTR MaLR -38 1542 3 1828 139 39 75 chr4 108494090 108494479 -93833868 - THE1C LTR MaLR 0 375 1 342 270 45 36 chr4 108494540 108494651 -93833696 - MIR SINE MIR -150 112 1 412 327 169 67 chr4 108495010 108495821 -93832526 + L2 LINE L2 231 1124 -2190 7863 232 27 27 chr4 108495831 108499023 -93829324 + L1PA13 LINE L1 1228 4406 -2391 13107 32 1 4 chr4 108499836 108501761 -93826586 - L1P1 LINE L1 -454 5701 3784 1785 110 4 0 chr4 108602184 108602429 -93725918 - AluSp SINE Alu -2 311 66 409 301 26 25 chr4 108602589 108602787 -93725560 - L1MEc LINE L1 -904 1883 1662 847 145 0 0 chr4 108602794 108602918 -93725429 + AluJb SINE Alu 1 124 -188 27 0 0 0 chr4 108602921 108602948 -93725399 + AT_rich Low_complexity Low_complexity 1 27 0 252 340 56 28 chr4 108603020 108603305 -93725042 - L1MEc LINE L1 -4862 1554 1262 1793 165 13 3 chr4 108603383 108603699 -93724648 - L1MC1 LINE L1 0 6333 6015 795 152 23 0 chr4 108603699 108603831 -93724516 + L1MC1 LINE L1 6199 6333 0 2169 153 20 22 chr4 108603842 108604248 -93724099 - L1MC1 LINE L1 -336 5997 5593 2071 128 7 3 chr4 108604249 108604546 -93723801 + AluSx SINE Alu 1 298 -14 2413 183 53 64 chr4 108604568 108605148 -93723199 - L1MEc LINE L1 -5834 592 19 567 310 69 72 chr4 108605158 108606096 -93722251 - L1MEd LINE L1 -5156 963 29 28 29 0 0 chr4 108606874 108606909 -93721438 + AT_rich Low_complexity Low_complexity 1 35 0 518 288 73 58 chr4 108607017 108607399 -93720948 + MLT1I LTR MaLR 21 408 -1 28 61 0 0 chr4 108608382 108608431 -93719916 + AT_rich Low_complexity Low_complexity 1 49 0 282 320 64 24 chr4 108608845 108608970 -93719377 - L2 LINE L2 -1 3312 3183 232 369 25 16 chr4 108611502 108611624 -93716723 + MIR SINE MIR 16 138 -70 199 260 0 78 chr4 108613567 108613644 -93714703 - MIR SINE MIR -81 181 111 * 223 236 18 0 chr4 108613599 108613654 -93714693 + MIR SINE MIR 126 181 -81 1625 181 0 11 chr4 108613705 108613982 -93714365 - AluJo SINE Alu -38 274 1 289 252 215 0 chr4 108614317 108614424 -93713923 + L2 LINE L2 2380 2509 -805 2132 114 3 7 chr4 108617225 108617531 -93710816 - AluSx SINE Alu -7 305 1 211 259 71 47 chr4 108617843 108617928 -93710419 - L2 LINE L2 -43 3270 3184 293 333 59 7 chr4 108618360 108618495 -93709852 - MIR3 SINE MIR -7 201 60 395 252 84 8 chr4 108620200 108620319 -93708028 - L3 LINE CR1 -1 1576 1449 241 301 138 35 chr4 108620358 108620561 -93707786 - MIR SINE MIR -10 252 29 489 304 178 5 chr4 108620752 108620966 -93707381 - MIR SINE MIR -10 252 2 26 0 0 0 chr4 108621455 108621481 -93706866 + AT_rich Low_complexity Low_complexity 1 26 0 242 261 261 0 chr4 108621481 108621596 -93706751 - MIR SINE MIR -1 261 117 206 328 109 35 chr4 108621712 108621941 -93706406 - L2 LINE L2 -937 2377 2132 1048 269 34 77 chr4 108622351 108622874 -93705473 + L2 LINE L2 2650 3140 -173 545 249 35 0 chr4 108622874 108623043 -93705304 - MER104 DNA MER2_type -3 177 3 1048 269 34 77 chr4 108623043 108623207 -93705140 + L2 LINE L2 3140 3309 -4 501 160 64 0 chr4 108623427 108623521 -93704826 - MLT1F1 LTR MaLR -3 564 465 692 294 20 40 chr4 108623526 108623778 -93704569 - MLT1E LTR MaLR -346 247 1 292 382 0 6 chr4 108626033 108626190 -93702157 + T-rich Low_complexity Low_complexity 3 158 0 594 286 156 3 chr4 108626235 108626518 -93701829 + MER46C DNA MER2_type 12 337 -1 6736 119 51 28 chr4 108626554 108627756 -93700591 - Tigger3b DNA MER2_type -2 1229 1 646 239 0 0 chr4 108627937 108628092 -93700255 + L1MA10 LINE L1 6167 6321 -13 384 357 52 26 chr4 108628440 108628712 -93699635 - L1MC/D LINE L1 -2150 5658 5380 24 32 0 0 chr4 108629034 108629065 -93699282 + AT_rich Low_complexity Low_complexity 1 31 0 2444 172 38 0 chr4 108629193 108629636 -93698711 + LOR1b LTR ERV1 2 461 0 21 36 0 0 chr4 108629853 108629881 -93698466 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr4 108629893 108629937 -93698410 + AT_rich Low_complexity Low_complexity 1 44 0 32 26 0 0 chr4 108629997 108630036 -93698311 + AT_rich Low_complexity Low_complexity 1 39 0 1035 328 43 3 chr4 108630271 108630616 -93697731 - MLT1I LTR MaLR -9 400 42 2408 168 40 17 chr4 108630758 108631277 -93697070 + L1MB8 LINE L1 5643 6173 -5 746 283 36 22 chr4 108631430 108631752 -93696595 + L1ME LINE L1 5328 5642 -528 255 324 58 7 chr4 108631856 108631995 -93696352 - L1 LINE L1 -3323 3059 2914 1873 157 3 3 chr4 108632109 108632402 -93695945 + AluSx SINE Alu 1 293 -19 2158 133 0 0 chr4 108632453 108632761 -93695586 - AluSx SINE Alu -4 308 1 371 134 31 55 chr4 108633027 108633154 -93695193 + (TA)n Simple_repeat Simple_repeat 2 125 0 404 358 26 0 chr4 108633257 108633461 -93694886 - L1 LINE L1 -3905 2477 2265 22 0 0 0 chr4 108633516 108633538 -93694809 + AT_rich Low_complexity Low_complexity 1 22 0 668 282 97 15 chr4 108633620 108633826 -93694521 + LTR16A LTR ERVL 228 450 0 1458 127 122 28 chr4 108633937 108634224 -93694123 - L1PA16 LINE L1 0 6166 5852 211 250 133 0 chr4 108636003 108636063 -93692284 - L2 LINE L2 -5 3267 3200 207 273 0 0 chr4 108636086 108636141 -93692206 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 517 279 60 16 chr4 108636918 108637101 -93691246 - L1ME2 LINE L1 -276 5888 5698 5207 213 67 25 chr4 108637103 108637925 -93690422 + L1 LINE L1 1134 1920 -4869 2372 103 3 0 chr4 108637925 108638237 -93690110 + AluSp SINE Alu 1 313 0 5207 213 67 25 chr4 108638237 108639016 -93689331 + L1 LINE L1 1920 2795 -3994 1167 212 24 24 chr4 108639083 108639333 -93689014 + AluJo SINE Alu 33 282 -30 3175 221 45 7 chr4 108639366 108640194 -93688153 + L1 LINE L1 2788 3646 -3142 4027 179 6 18 chr4 108640222 108641062 -93687285 + L1 LINE L1 5143 5972 -816 1633 178 25 0 chr4 108641063 108641344 -93687003 - MSTB2 LTR MaLR 0 457 170 837 100 8 0 chr4 108641528 108641648 -93686699 - L1PA13 LINE L1 -297 5871 5751 1983 86 21 0 chr4 108641654 108641933 -93686414 + L1PA13 LINE L1 5867 6151 -12 415 241 97 46 chr4 108642359 108642554 -93685793 + LTR33 LTR ERVL 317 521 0 234 180 100 20 chr4 108643519 108643569 -93684778 + MIR SINE MIR 85 138 -124 243 196 0 0 chr4 108643590 108643636 -93684711 + L2 LINE L2 3252 3297 -16 279 304 51 57 chr4 108644595 108644753 -93683594 - MIR SINE MIR -71 191 35 2251 66 0 57 chr4 108644837 108645154 -93683193 - AluY SINE Alu -12 299 1 235 295 48 19 chr4 108646384 108646489 -93681858 + L1ME1 LINE L1 5942 6049 -117 265 62 77 0 chr4 108646538 108646603 -93681744 + (TA)n Simple_repeat Simple_repeat 1 70 0 296 74 130 0 chr4 108646707 108646761 -93681586 + AluSc SINE Alu 239 299 0 1827 143 30 36 chr4 108647826 108648127 -93680220 + AluSx SINE Alu 1 299 -13 992 283 91 27 chr4 108649169 108649326 -93679021 - MLT1L LTR MaLR -8 607 461 2269 101 3 0 chr4 108649326 108649622 -93678725 - AluSg SINE Alu -13 297 1 992 283 91 27 chr4 108649622 108649903 -93678444 - MLT1L LTR MaLR -154 461 141 835 184 13 0 chr4 108650068 108650220 -93678127 - MER20 DNA MER1_type 0 219 66 1149 121 12 0 chr4 108651225 108651453 -93676894 + AluY SINE Alu 136 365 0 547 306 21 5 chr4 108651678 108651864 -93676483 + MIR SINE MIR 70 258 -4 285 97 0 48 chr4 108652182 108652244 -93676103 + (TA)n Simple_repeat Simple_repeat 1 59 0 2064 121 19 3 chr4 108652292 108652599 -93675748 - AluSx SINE Alu 0 312 1 750 285 104 33 chr4 108652751 108653090 -93675257 - L1ME3A LINE L1 -234 6330 6016 2633 88 6 0 chr4 108653090 108653442 -93674905 + THE1A LTR MaLR 1 354 -1 750 285 104 33 chr4 108653442 108653701 -93674646 - L1ME3A LINE L1 -548 6016 5671 237 285 57 74 chr4 108653851 108654230 -93674117 + MLT1H LTR MaLR 53 533 -16 1077 291 80 33 chr4 108654597 108655585 -93672762 - L1ME3A LINE L1 -1353 5187 4154 2490 150 10 0 chr4 108655587 108655986 -93672361 + MER57A LTR ERV1 1 403 0 28438 155 74 77 chr4 108655986 108659271 -93669076 + MER57A-int LTR ERV1 1 3293 -4244 2270 81 34 0 chr4 108659271 108659567 -93668780 + AluY SINE Alu 1 306 -5 28438 155 74 77 chr4 108659567 108660993 -93667354 + MER57A-int LTR ERV1 3293 4721 -2816 2139 138 0 0 chr4 108660993 108661290 -93667057 + AluSg1 SINE Alu 1 297 -12 28438 155 74 77 chr4 108661290 108661391 -93666956 + MER57A-int LTR ERV1 4721 4821 -2716 1942 158 0 7 chr4 108661391 108661688 -93666659 - AluSx SINE Alu -17 295 1 28438 155 74 77 chr4 108661688 108663246 -93665101 + MER57A-int LTR ERV1 4821 6354 -1183 2465 80 0 0 chr4 108663246 108663547 -93664800 - AluSq SINE Alu -12 301 1 28438 155 74 77 chr4 108663547 108664338 -93664009 + MER57A-int LTR ERV1 6354 7146 -391 749 122 24 8 chr4 108664338 108664461 -93663886 + LTR54B LTR ERV1 3 127 -371 1391 122 94 8 chr4 108664461 108664706 -93663641 + MER57A-int LTR ERV1 7272 7537 0 2078 141 92 0 chr4 108664706 108665075 -93663272 + MER57A LTR ERV1 1 403 0 662 304 34 11 chr4 108665080 108665461 -93662886 - L1ME3A LINE L1 -2414 4126 3737 312 280 0 30 chr4 108665706 108665806 -93662541 - L1ME3A LINE L1 -3979 2561 2465 1740 126 4 0 chr4 108666078 108666324 -93662023 - AluSp SINE Alu -1 312 66 497 19 93 0 chr4 108666601 108666708 -93661639 + (TA)n Simple_repeat Simple_repeat 2 118 0 422 285 95 40 chr4 108666742 108666995 -93661352 + LTR16C LTR ERVL 215 481 -10 821 226 6 6 chr4 108667536 108667704 -93660643 - MER63A DNA MER1_type -4 206 39 219 392 91 7 chr4 108667832 108667975 -93660372 - MIR3 SINE MIR -21 187 33 2189 189 116 0 chr4 108669245 108669710 -93658637 - MLT2B1 LTR ERVL -1 519 1 565 325 4 44 chr4 108670767 108671016 -93657331 + MIR SINE MIR 4 242 -20 264 295 156 8 chr4 108671039 108671161 -93657186 + MIR3 SINE MIR 12 151 -57 502 212 78 134 chr4 108671215 108671245 -93657102 - MIR SINE MIR -1 261 231 1827 116 105 14 chr4 108671245 108671530 -93656817 + AluSx SINE Alu 2 312 0 502 212 78 134 chr4 108671530 108671716 -93656631 - MIR SINE MIR -31 231 57 6481 141 52 12 chr4 108671790 108672952 -93655395 + Tigger3b DNA MER2_type 1 1208 -23 1765 138 72 47 chr4 108672967 108673009 -93655338 - THE1C LTR MaLR 0 375 336 2306 107 0 0 chr4 108673009 108673317 -93655030 + AluSx SINE Alu 1 308 -4 1765 138 72 47 chr4 108673317 108673636 -93654711 - THE1C LTR MaLR -39 336 5 27 29 0 0 chr4 108673788 108673822 -93654525 + AT_rich Low_complexity Low_complexity 1 34 0 202 318 0 15 chr4 108673824 108673890 -93654457 + MIR3 SINE MIR 138 202 -6 198 0 0 0 chr4 108675607 108675629 -93652718 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 273 167 21 0 chr4 108675929 108675977 -93652370 - L2 LINE L2 0 3313 3265 2348 83 0 3 chr4 108676117 108676419 -93651928 + AluY SINE Alu 1 301 -10 22 0 0 0 chr4 108676503 108676525 -93651822 + AT_rich Low_complexity Low_complexity 1 22 0 419 167 146 0 chr4 108677022 108677118 -93651229 + LOR1b LTR ERV1 1 110 -351 504 131 0 4 chr4 108677118 108677277 -93651070 + AluSg/x SINE Alu 75 291 -19 2054 126 56 36 chr4 108677309 108677666 -93650681 + THE1B LTR MaLR 1 364 0 10646 122 17 1 chr4 108677666 108679222 -93649125 + THE1B-int LTR MaLR 1 1580 0 1996 143 44 41 chr4 108679222 108679585 -93648762 + THE1B LTR MaLR 1 364 0 514 95 274 0 chr4 108679601 108679696 -93648651 + LOR1-int LTR ERV1 443 563 -7557 968 110 0 0 chr4 108679705 108679832 -93648515 - AluY SINE Alu -184 127 1 21040 110 48 26 chr4 108679834 108683402 -93644945 + LOR1-int LTR ERV1 569 4058 -4062 2055 117 3 3 chr4 108683402 108683684 -93644663 + AluSx SINE Alu 1 282 -30 21040 110 48 26 chr4 108683684 108683706 -93644641 + LOR1-int LTR ERV1 4058 4078 -4042 22 35 0 0 chr4 108683706 108683735 -93644612 + AT_rich Low_complexity Low_complexity 1 29 0 21040 110 48 26 chr4 108683735 108683749 -93644598 + LOR1-int LTR ERV1 4078 4281 -3839 5692 111 18 38 chr4 108683756 108684373 -93643974 + LOR1-int LTR ERV1 4507 5135 -2985 1766 168 18 0 chr4 108684373 108684658 -93643689 + AluSx SINE Alu 1 290 -22 5692 111 18 38 chr4 108684658 108685008 -93643339 + LOR1-int LTR ERV1 5135 5454 -2666 2493 79 0 0 chr4 108685008 108685312 -93643035 + AluY SINE Alu 1 304 -7 5692 111 18 38 chr4 108685312 108685365 -93642982 + LOR1-int LTR ERV1 5454 5507 -2613 3410 77 7 5 chr4 108685365 108685808 -93642539 - MLT2A1 LTR ERVL 0 444 1 32218 81 11 6 chr4 108685808 108686235 -93642112 - HERVL-A1 LTR ERVL 0 5654 5231 183 42 0 0 chr4 108686235 108686259 -93642088 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 32218 81 11 6 chr4 108686259 108687649 -93640698 - HERVL-A1 LTR ERVL -423 5231 3850 2318 79 0 48 chr4 108687649 108687965 -93640382 - AluY SINE Alu -10 301 1 32218 81 11 6 chr4 108687965 108690601 -93637746 - HERVL-A1 LTR ERVL -1804 3850 1176 1973 61 0 12 chr4 108690602 108690847 -93637500 + AluY SINE Alu 65 306 -5 21 0 0 0 chr4 108691190 108691211 -93637136 + AT_rich Low_complexity Low_complexity 1 21 0 246 220 0 0 chr4 108691826 108691885 -93636462 + (TG)n Simple_repeat Simple_repeat 2 60 0 21 36 0 0 chr4 108692459 108692487 -93635860 + AT_rich Low_complexity Low_complexity 1 28 0 2423 205 41 72 chr4 108692519 108692881 -93635466 - MER31-int LTR ERV1 -877 5779 5408 2329 94 0 0 chr4 108692881 108693179 -93635168 - AluSc SINE Alu -11 298 1 2423 205 41 72 chr4 108693179 108693597 -93634750 - MER31-int LTR ERV1 -1248 5408 3324 1197 213 91 5 chr4 108693592 108693967 -93634380 - MER31-int LTR ERV1 -1803 3133 2727 * 26 50 0 0 chr4 108694464 108694504 -93633843 + AT_rich Low_complexity Low_complexity 1 40 0 284 291 36 18 chr4 108694642 108694752 -93633595 - MER110 LTR ERV1 0 491 380 620 246 88 49 chr4 108695125 108695430 -93632917 + MER110 LTR ERV1 166 482 -9 * 787 225 73 0 chr4 108695429 108695647 -93632700 - MER110 LTR ERV1 -110 381 148 680 223 116 35 chr4 108695787 108696105 -93632242 - LTR37B LTR ERV1 -114 354 11 327 376 174 3 chr4 108697011 108697373 -93630974 - L2 LINE L2 -663 2651 2228 4766 209 28 18 chr4 108697909 108699179 -93629168 - L1PB2 LINE L1 -883 5263 3982 * 5494 115 6 1 chr4 108699177 108700047 -93628300 + L1PB2 LINE L1 5278 6151 0 665 130 20 0 chr4 108701043 108701143 -93627204 - AluJ SINE Alu -21 291 190 5359 65 3 27 chr4 108701143 108701848 -93626499 - LTR12 LTR ERV1 0 688 1 4429 74 30 0 chr4 108701848 108702473 -93625874 - HERV9 LTR ERV1 0 8399 7756 1809 136 53 32 chr4 108702467 108703203 -93625144 - HERV17 LTR ERV1 -5176 1720 735 * 27282 89 10 12 chr4 108703206 108708006 -93620341 - HERV17 LTR ERV1 -3457 4942 58 5177 89 3 26 chr4 108708030 108708734 -93619613 - LTR12 LTR ERV1 0 688 1 941 201 35 0 chr4 108708734 108708908 -93619439 - AluJ SINE Alu -119 193 14 191 337 76 43 chr4 108709379 108709471 -93618876 + MIR SINE MIR 21 115 -147 2149 114 0 19 chr4 108710247 108710555 -93617792 - AluSc SINE Alu -7 302 1 245 276 5 0 chr4 108710922 108710988 -93617359 - MIR SINE MIR -51 157 89 378 322 121 29 chr4 108711998 108712237 -93616110 + MIR SINE MIR 1 261 -1 420 272 29 22 chr4 108712704 108712840 -93615507 - MIR3 SINE MIR -46 162 26 31 26 0 0 chr4 108715571 108715609 -93612738 + AT_rich Low_complexity Low_complexity 1 38 0 362 266 110 19 chr4 108715777 108715931 -93612416 + MIR SINE MIR 78 245 -17 467 302 12 65 chr4 108716270 108716438 -93611909 - L2 LINE L2 0 3313 3160 1643 164 7 14 chr4 108716438 108716724 -93611623 + AluJb SINE Alu 1 284 -28 467 302 12 65 chr4 108716724 108716800 -93611547 - L2 LINE L2 -153 3160 3082 * 527 281 87 71 chr4 108716777 108717030 -93611317 - L2 LINE L2 -440 2874 2618 365 0 22 0 chr4 108717638 108717683 -93610664 + (TG)n Simple_repeat Simple_repeat 1 46 0 647 57 11 0 chr4 108717951 108717976 -93610371 + (GGAA)n Simple_repeat Simple_repeat 1 114 0 647 57 11 0 chr4 108717976 108718064 -93610283 + (GGAA)n Simple_repeat Simple_repeat 3 91 0 208 235 0 25 chr4 108719435 108719516 -93608831 + GA-rich Low_complexity Low_complexity 3 81 0 21 0 0 0 chr4 108720109 108720130 -93608217 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr4 108721802 108721827 -93606520 + (T)n Simple_repeat Simple_repeat 1 25 0 1246 113 0 0 chr4 108721845 108722005 -93606342 - AluSc SINE Alu -149 160 1 2300 100 7 7 chr4 108722748 108723057 -93605290 + AluSc SINE Alu 1 309 0 355 250 108 0 chr4 108723274 108723394 -93604953 - MIR SINE MIR -10 252 120 222 195 0 0 chr4 108723997 108724038 -93604309 + (TG)n Simple_repeat Simple_repeat 2 42 0 1981 137 7 0 chr4 108724076 108724369 -93603978 + AluSq SINE Alu 1 295 -18 2203 78 4 4 chr4 108724369 108724695 -93603652 + AluY SINE Alu 1 326 0 1301 243 130 44 chr4 108725430 108725929 -93602418 - MLT1F LTR MaLR 0 542 1 1766 143 50 7 chr4 108726619 108726898 -93601449 - AluSx SINE Alu -21 291 1 2253 93 0 10 chr4 108727174 108727474 -93600873 + AluY SINE Alu 1 297 -14 1774 169 3 10 chr4 108727995 108728290 -93600057 - AluJo SINE Alu -19 293 1 189 271 149 9 chr4 108728883 108728990 -93599357 - MIR SINE MIR -59 203 82 317 322 249 0 chr4 108729618 108729823 -93598524 + L2 LINE L2 2709 2964 -350 311 73 0 0 chr4 108730185 108730226 -93598121 + Alu SINE Alu 1 41 -262 12647 182 33 13 chr4 108730326 108734502 -93593845 + L1PB2 LINE L1 2598 6866 -1 2272 201 9 14 chr4 108734658 108734852 -93593495 + MER89 LTR ERV1 4 197 -362 4020 97 9 0 chr4 108734852 108735401 -93592946 - MER41A LTR ERV1 0 554 1 2272 201 9 14 chr4 108735401 108735650 -93592697 + MER89 LTR ERV1 197 445 -114 401 240 0 50 chr4 108735671 108735771 -93592576 + L2 LINE L2 3219 3313 0 2163 120 3 13 chr4 108736065 108736381 -93591966 + AluSp SINE Alu 1 313 0 186 43 0 0 chr4 108737178 108737201 -93591146 + (CA)n Simple_repeat Simple_repeat 2 24 0 3989 145 20 1 chr4 108737888 108738570 -93589777 - L1MA4A LINE L1 0 7005 6311 376 164 0 0 chr4 108738571 108738644 -93589703 - L1MA4A LINE L1 -1776 5072 5000 1896 189 16 8 chr4 108738648 108739322 -93589025 - L1M1 LINE L1 -704 5596 4915 2679 175 40 44 chr4 108739328 108740004 -93588343 - L1M1 LINE L1 -1426 4720 4048 * 5460 170 16 26 chr4 108739972 108741000 -93587347 + L1P LINE L1 11 1027 -5119 2054 96 3 31 chr4 108741037 108741376 -93586971 + AluY SINE Alu 1 331 0 7058 53 8 1 chr4 108741382 108742522 -93585825 + L1PA6 LINE L1 5004 6149 -5 8114 211 34 20 chr4 108742523 108742557 -93585790 - L1MA4A LINE L1 -2040 4808 4776 2056 97 35 3 chr4 108742557 108742847 -93585500 - AluSc SINE Alu -10 299 1 8114 211 34 20 chr4 108742847 108743827 -93584520 - L1MA4A LINE L1 -2072 4776 3811 2074 105 28 0 chr4 108743827 108744112 -93584235 - AluSc SINE Alu -16 293 1 8114 211 34 20 chr4 108744112 108746719 -93581628 - L1MA4A LINE L1 -3037 3811 1130 221 342 20 34 chr4 108747203 108747352 -93580995 + MIR SINE MIR 78 224 -38 262 220 85 93 chr4 108747531 108747649 -93580698 - MER94 DNA DNA -16 118 2 1610 243 123 36 chr4 108747977 108748715 -93579632 + Charlie2a DNA MER1_type 1472 2285 -577 1984 94 70 30 chr4 108748715 108749014 -93579333 - AluY SINE Alu 0 311 1 1610 243 123 36 chr4 108749014 108749069 -93579278 + Charlie2a DNA MER1_type 2285 2334 -528 333 172 0 103 chr4 108749273 108749304 -93579043 - L1MA9 LINE L1 -38 6274 6241 1394 213 13 17 chr4 108749304 108749605 -93578742 - AluJo SINE Alu -12 300 1 333 172 0 103 chr4 108749605 108749689 -93578658 - L1MA9 LINE L1 -71 6241 6171 239 349 13 74 chr4 108750221 108750370 -93577977 + L2 LINE L2 2945 3084 -188 603 276 133 18 chr4 108750869 108751431 -93576916 + L1M4 LINE L1 2898 3524 -2622 2295 77 7 0 chr4 108751724 108752011 -93576336 + AluY SINE Alu 1 289 -22 1414 211 154 50 chr4 108752101 108752381 -93575966 - L1ME2 LINE L1 -164 6000 5751 198 0 0 0 chr4 108752381 108752403 -93575944 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1414 211 154 50 chr4 108752403 108752687 -93575660 - L1ME2 LINE L1 -413 5751 5377 22 70 0 0 chr4 108753441 108753484 -93574863 + AT_rich Low_complexity Low_complexity 1 43 0 25 65 0 0 chr4 108753615 108753661 -93574686 + AT_rich Low_complexity Low_complexity 1 46 0 2163 96 14 0 chr4 108753920 108754200 -93574147 - AluSp SINE Alu -27 286 3 1030 67 0 0 chr4 108754631 108754765 -93573582 - L1MA1 LINE L1 -4 6298 6165 317 289 83 50 chr4 108854889 108855069 -93473278 + L1MB8 LINE L1 5474 5659 -462 327 270 56 32 chr4 108855106 108855232 -93473115 + L1MB8 LINE L1 5768 5896 -282 2253 253 49 18 chr4 108855502 108856175 -93472172 + L1PA13 LINE L1 1280 1973 -4814 4627 123 71 24 chr4 108856326 108857236 -93471111 - THE1C-int LTR MaLR -627 953 1 1740 109 77 60 chr4 108857236 108857602 -93470745 - THE1C LTR MaLR -3 372 1 2905 159 16 144 chr4 108858137 108859245 -93469102 + L1P4 LINE L1 4487 5453 -712 412 177 122 44 chr4 108859731 108859912 -93468435 + L1M3 LINE L1 5401 5595 -585 1294 99 6 6 chr4 108860417 108860598 -93467749 - AluSg/x SINE Alu -6 306 126 289 320 147 25 chr4 108861005 108861338 -93467009 - L2 LINE L2 -298 2974 2597 308 176 0 27 chr4 108861645 108861719 -93466628 - MER74B LTR ERVL -495 127 56 2128 113 3 7 chr4 108861726 108862027 -93466320 + AluSg SINE Alu 5 304 -6 753 198 34 23 chr4 108862027 108862204 -93466143 - MER3 DNA MER1_type -29 180 2 207 204 111 0 chr4 108862402 108862456 -93465891 + L2 LINE L2 3206 3265 -7 1919 157 3 0 chr4 108862561 108862854 -93465493 - AluSq SINE Alu -17 296 3 2082 132 46 23 chr4 108863185 108863578 -93464769 - L1MA4 LINE L1 -4 6296 5895 1696 176 26 17 chr4 108863983 108864285 -93464062 - AluJo SINE Alu -7 305 1 21 36 0 0 chr4 108865430 108865458 -93462889 + AT_rich Low_complexity Low_complexity 1 28 0 1469 168 95 7 chr4 108865478 108865752 -93462595 - AluJb SINE Alu -14 298 1 338 295 96 19 chr4 108865752 108865908 -93462439 - L1 LINE L1 -1644 4502 4335 288 303 72 33 chr4 108866063 108866423 -93461924 - L1 LINE L1 -1998 4148 3775 231 224 0 0 chr4 108866591 108866698 -93461649 + A-rich Low_complexity Low_complexity 1 107 0 1729 191 3 7 chr4 108867571 108867880 -93460467 + AluJo SINE Alu 1 308 -4 207 69 0 0 chr4 108868002 108868031 -93460316 + (A)n Simple_repeat Simple_repeat 1 29 0 506 186 24 0 chr4 108868518 108868642 -93459705 - L1PA4 LINE L1 -5 6150 6024 364 261 58 17 chr4 108868749 108868990 -93459357 + AluSg SINE Alu 50 300 0 837 131 131 0 chr4 108869047 108869215 -93459132 + MER30 DNA MER1_type 1 190 -40 180 0 0 0 chr4 108869246 108869266 -93459081 + (TTG)n Simple_repeat Simple_repeat 2 21 0 978 182 15 30 chr4 108869266 108869464 -93458883 - AluJo SINE Alu -33 279 85 262 256 251 23 chr4 108870502 108870721 -93457626 - L1ME3 LINE L1 -24 6138 5870 237 266 55 62 chr4 108871287 108871415 -93456932 + L2 LINE L2 2188 2314 -1000 2026 109 41 3 chr4 108871833 108872126 -93456221 + AluSx SINE Alu 1 304 -8 9307 14 1 2 chr4 108873024 108874884 -93453463 - L1HS LINE L1 -69 6086 4228 1710 170 3 3 chr4 108875486 108875768 -93452579 - AluJo SINE Alu -26 286 5 2216 108 3 37 chr4 108876403 108876726 -93451621 + AluSx SINE Alu 1 312 0 902 244 74 6 chr4 108876728 108877052 -93451295 + L1 LINE L1 3186 3531 -2615 321 153 42 0 chr4 108877034 108877106 -93451241 + L1 LINE L1 5230 5304 -842 * 3626 73 6 2 chr4 108877225 108877705 -93450642 + L1PA5 LINE L1 5669 6150 -4 11600 53 5 0 chr4 108877858 108879398 -93448949 + L1P LINE L1 3606 5153 -993 3440 177 65 4 chr4 108879503 108880181 -93448166 + THE1C-int LTR MaLR 933 1651 0 1681 145 85 58 chr4 108880181 108880500 -93447847 + THE1C LTR MaLR 1 333 -42 2127 129 0 7 chr4 108880500 108880794 -93447553 - AluSc SINE Alu -17 292 1 1681 145 85 58 chr4 108880794 108880839 -93447508 + THE1C LTR MaLR 333 375 0 229 329 66 0 chr4 108880867 108880943 -93447404 + L2 LINE L2 3172 3252 -20 861 295 58 31 chr4 108881038 108881397 -93446950 - L2 LINE L2 -2 3311 2943 354 277 113 115 chr4 108882151 108882663 -93445684 + L3 LINE CR1 1055 1565 -12 24 0 0 0 chr4 108882707 108882731 -93445616 + AT_rich Low_complexity Low_complexity 1 24 0 334 338 0 0 chr4 108883669 108883817 -93444530 + A-rich Low_complexity Low_complexity 1 148 0 237 354 57 40 chr4 108884025 108884200 -93444147 - L2 LINE L2 -283 3030 2853 570 179 40 54 chr4 108884587 108884786 -93443561 - MLT1C LTR MaLR -46 421 167 2007 138 34 0 chr4 108884804 108885131 -93443216 - L1PA16 LINE L1 -9 6157 5820 2113 133 0 25 chr4 108885132 108885449 -93442898 - AluSx SINE Alu -3 309 1 411 220 20 0 chr4 108885541 108885641 -93442706 - FLAM_A SINE Alu -6 136 35 1655 179 0 27 chr4 108885716 108886017 -93442330 + AluJb SINE Alu 1 293 -19 815 186 75 25 chr4 108886062 108886341 -93442006 + THE1C LTR MaLR 1 293 -82 1581 176 46 29 chr4 108886490 108886797 -93441550 - AluJo SINE Alu 0 312 1 2233 244 28 7 chr4 108886854 108887937 -93440410 + L1M4c LINE L1 2009 3112 -3270 1511 234 28 109 chr4 108887957 108888524 -93439823 + MLT2B3 LTR ERVL 5 483 -37 231 264 0 0 chr4 108888528 108888600 -93439747 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 1733 172 7 10 chr4 108889303 108889599 -93438748 - AluJb SINE Alu -17 295 1 222 260 26 39 chr4 108891082 108891159 -93437188 + MIR SINE MIR 187 262 0 493 182 25 66 chr4 108891382 108891503 -93436844 - FLAM_A SINE Alu -17 116 1 958 184 28 90 chr4 108891626 108891881 -93436466 - MER8 DNA MER2_type 0 239 1 351 302 9 9 chr4 108892486 108892602 -93435745 - MIR SINE MIR 0 262 147 21 0 0 0 chr4 108892926 108892947 -93435400 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 108893196 108893226 -93435121 + AT_rich Low_complexity Low_complexity 1 30 0 663 274 55 30 chr4 108893242 108893479 -93434868 - MIR SINE MIR -3 259 17 311 233 85 93 chr4 108893690 108893819 -93434528 - L2 LINE L2 -7 3265 3138 2030 156 3 7 chr4 108893944 108894252 -93434095 - AluJb SINE Alu -5 307 1 1311 192 25 25 chr4 108894454 108894590 -93433757 + AluJo SINE Alu 1 136 -176 2315 108 0 7 chr4 108894590 108894895 -93433452 + AluSx SINE Alu 1 303 -9 1311 192 25 25 chr4 108894895 108895044 -93433303 + AluJo SINE Alu 135 286 -26 5743 96 7 41 chr4 108895150 108895945 -93432402 + L1PB1 LINE L1 5025 5777 -374 288 0 0 0 chr4 108895945 108895977 -93432370 + (CA)n Simple_repeat Simple_repeat 2 33 0 5743 96 7 41 chr4 108895977 108896340 -93432007 + L1PB1 LINE L1 5777 6151 0 445 95 0 0 chr4 108896340 108896403 -93431944 + L1PA15 LINE L1 5725 5787 -379 2353 140 12 15 chr4 108896433 108896840 -93431507 + L1PA15 LINE L1 5760 6165 0 208 242 117 101 chr4 108896980 108897228 -93431119 - L2 LINE L2 -1377 1937 1686 192 125 0 0 chr4 108897270 108897302 -93431045 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 35 0 0 0 chr4 108897960 108897995 -93430352 + AT_rich Low_complexity Low_complexity 1 35 0 314 246 127 119 chr4 108898426 108898836 -93429511 + L1M2 LINE L1 588 1000 -5849 754 295 71 49 chr4 108898951 108899589 -93428758 - L1MEd LINE L1 -5087 1032 374 2025 136 0 3 chr4 108899589 108899919 -93428428 - AluSq SINE Alu 0 329 1 754 295 71 49 chr4 108899919 108899972 -93428375 - L1MEd LINE L1 -5745 374 324 2272 103 3 7 chr4 108900642 108900952 -93427395 - AluSx SINE Alu -3 309 1 29 0 0 0 chr4 108901588 108901617 -93426730 + AT_rich Low_complexity Low_complexity 1 29 0 2451 161 43 2 chr4 108901666 108902131 -93426216 - L1PA16 LINE L1 -20 6146 5663 603 172 94 0 chr4 108902134 108902262 -93426085 - L1 LINE L1 -2310 3836 3697 387 0 0 0 chr4 108902262 108902305 -93426042 + (TG)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chr4 108903187 108903208 -93425139 + AT_rich Low_complexity Low_complexity 1 21 0 1861 99 41 73 chr4 108903458 108903772 -93424575 - AluY SINE Alu -7 304 1 54 40 0 0 chr4 108903825 108903900 -93424447 + AT_rich Low_complexity Low_complexity 1 75 0 22 0 0 30 chr4 108904129 108904147 -93424200 + AT_rich Low_complexity Low_complexity 1 19 -13 2311 103 0 0 chr4 108904147 108904447 -93423900 - AluSg SINE Alu -10 300 1 22 0 0 30 chr4 108904447 108904461 -93423886 + AT_rich Low_complexity Low_complexity 19 32 0 24 32 0 0 chr4 108905200 108905231 -93423116 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr4 108905667 108905693 -93422654 + AT_rich Low_complexity Low_complexity 1 26 0 486 316 116 5 chr4 108906527 108906742 -93421605 + MIR SINE MIR 5 243 -19 1630 130 0 121 chr4 108907116 108907462 -93420885 - THE1-int LTR MaLR -926 654 351 24331 106 13 11 chr4 108907471 108911297 -93417050 + L1P LINE L1 11 3841 -2305 3082 239 121 56 chr4 108911403 108911622 -93416725 - L1M3c LINE L1 -4897 1244 1041 303 28 0 0 chr4 108911622 108911658 -93416689 + (TG)n Simple_repeat Simple_repeat 2 37 0 3082 239 121 56 chr4 108911658 108912606 -93415741 - L1M3c LINE L1 -5100 1041 1 575 210 0 0 chr4 108913156 108913256 -93415091 - FRAM SINE Alu -32 144 45 24 32 0 0 chr4 108913540 108913571 -93414776 + AT_rich Low_complexity Low_complexity 1 31 0 897 262 46 7 chr4 108913688 108913993 -93414354 - HAL1 LINE L1 -695 1812 1496 1125 195 8 16 chr4 108914012 108914258 -93414089 - MSTB1 LTR MaLR 0 432 189 2319 93 0 13 chr4 108914259 108914571 -93413776 - AluSg SINE Alu -2 308 1 21 36 0 0 chr4 108916913 108916941 -93411406 + AT_rich Low_complexity Low_complexity 1 28 0 1934 116 18 7 chr4 108919186 108919462 -93408885 - AluSc SINE Alu -30 279 1 2323 102 161 5 chr4 108919462 108919892 -93408455 - THE1C-int LTR MaLR -1083 497 1 1671 148 70 9 chr4 108919934 108920264 -93408083 - THE1C LTR MaLR -25 350 1 37 52 0 0 chr4 108920272 108920330 -93408017 + AT_rich Low_complexity Low_complexity 1 58 0 347 254 63 24 chr4 108920391 108920517 -93407830 + L1ME2 LINE L1 5985 6115 -49 2064 116 30 17 chr4 108920533 108920834 -93407513 + AluSg SINE Alu 1 305 -5 810 280 62 29 chr4 108920838 108921502 -93406845 + L1M4 LINE L1 3097 3782 -2364 1572 185 10 38 chr4 108921561 108921875 -93406472 - AluJo SINE Alu -7 305 1 365 324 0 9 chr4 108921897 108922002 -93406345 + LTR67 LTR ERVL 49 152 -405 285 29 0 0 chr4 108922119 108922153 -93406194 + (TA)n Simple_repeat Simple_repeat 2 35 0 1749 110 16 8 chr4 108922174 108922429 -93405918 - AluSx SINE Alu -55 257 1 481 306 87 32 chr4 108922439 108922750 -93405597 - L2 LINE L2 -1072 2242 1915 1772 190 0 7 chr4 108923428 108923738 -93404609 + AluJo SINE Alu 1 308 -4 213 154 0 0 chr4 108923860 108923899 -93404448 + A-rich Low_complexity Low_complexity 1 39 0 199 173 0 135 chr4 108924045 108924097 -93404250 + L2 LINE L2 3267 3311 -2 4095 44 0 0 chr4 108924370 108924873 -93403474 - L1PA4 LINE L1 0 6155 5653 1739 43 9 0 chr4 108924873 108925105 -93403242 + L1P LINE L1 5137 5370 -776 232 175 0 63 chr4 108925264 108925327 -93403020 + GA-rich Low_complexity Low_complexity 3 61 0 213 39 0 0 chr4 108925331 108925357 -93402990 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2470 84 3 0 chr4 108925871 108926182 -93402165 + AluSp SINE Alu 1 312 -1 22 0 0 0 chr4 108926417 108926439 -93401908 + AT_rich Low_complexity Low_complexity 1 22 0 33 73 0 0 chr4 108926636 108926704 -93401643 + AT_rich Low_complexity Low_complexity 1 68 0 238 169 0 51 chr4 108926834 108926893 -93401454 - MER5C DNA MER1_type -1 323 268 709 126 0 0 chr4 108926906 108927017 -93401330 - L1PA13 LINE L1 -11 6152 6042 330 202 110 18 chr4 108927080 108927189 -93401158 - MER5C DNA MER1_type -188 136 18 4505 22 0 0 chr4 108927330 108927877 -93400470 - L1P LINE L1 -1926 4220 3674 225 316 84 31 chr4 108927961 108928186 -93400161 + HAL1 LINE L1 1507 1743 -764 322 262 26 110 chr4 108928364 108928501 -93399846 + L1M4b LINE L1 91 209 -6650 2441 73 50 6 chr4 108928501 108928841 -93399506 + THE1A LTR MaLR 1 355 0 322 262 26 110 chr4 108928841 108928894 -93399453 + L1M4b LINE L1 209 265 -6594 771 86 0 0 chr4 108929115 108929329 -93399018 + L1PA8 LINE L1 6066 6279 0 2172 227 85 11 chr4 108929457 108930518 -93397829 + L1M4b LINE L1 1267 2409 -4550 321 89 0 0 chr4 108930520 108930565 -93397782 + (TG)n Simple_repeat Simple_repeat 2 46 0 1037 219 9 42 chr4 108930763 108930838 -93397509 + AluJo SINE Alu 39 115 -197 2427 126 78 0 chr4 108930838 108931235 -93397112 + MSTA LTR MaLR 1 428 0 1037 219 9 42 chr4 108931235 108931374 -93396973 + AluJo SINE Alu 115 246 -66 2320 78 0 7 chr4 108931400 108931696 -93396651 + AluY SINE Alu 1 294 -17 309 238 87 16 chr4 108931737 108931966 -93396381 + L1M4b LINE L1 2847 3135 -3897 237 178 0 0 chr4 108931979 108932024 -93396323 + (CA)n Simple_repeat Simple_repeat 2 46 0 249 198 60 86 chr4 108932075 108932191 -93396156 + MIR SINE MIR 95 207 -55 249 208 139 0 chr4 108932490 108932562 -93395785 + MER5C DNA MER1_type 34 115 -209 3203 229 28 7 chr4 108932662 108933423 -93394924 - L1PA13 LINE L1 -4783 2004 1228 424 326 169 64 chr4 108933433 108934242 -93394105 - L2 LINE L2 -2190 1124 231 342 270 45 36 chr4 108934601 108934712 -93393635 + MIR SINE MIR 1 112 -150 1828 139 39 75 chr4 108934773 108935162 -93393185 + THE1C LTR MaLR 1 375 0 8546 133 60 7 chr4 108935164 108936626 -93391721 + THE1C-int LTR MaLR 3 1542 -38 410 34 34 0 chr4 108936626 108936685 -93391662 + THE1C-int LTR MaLR 1506 1566 -85 4582 87 6 3 chr4 108936786 108937505 -93390842 - L1PA11 LINE L1 -251 5923 5203 499 136 0 0 chr4 108937513 108937594 -93390753 + L1MC2 LINE L1 6253 6333 -11 1937 58 0 0 chr4 108938474 108938731 -93389616 - L1P2 LINE L1 -491 5664 5408 882 118 0 15 chr4 108938928 108939063 -93389284 - AluSp SINE Alu -180 133 1 1225 320 146 45 chr4 108939066 108940207 -93388140 + L2 LINE L2 2013 3265 -7 233 183 0 83 chr4 108940335 108940395 -93387952 - L2 LINE L2 0 3313 3259 467 152 0 0 chr4 108940610 108940689 -93387658 + L1PB4 LINE L1 6066 6144 -12 474 278 63 0 chr4 108941665 108941791 -93386556 - MIR SINE MIR -122 140 7 220 244 0 0 chr4 108942133 108942178 -93386169 + L2 LINE L2 3261 3305 -8 1160 345 93 25 chr4 108942273 108943214 -93385133 - L2 LINE L2 -218 3054 2050 1376 177 25 122 chr4 108943569 108943971 -93384376 + MLT1A1 LTR MaLR 1 363 -2 7997 196 38 36 chr4 108943971 108945700 -93382647 + MLT1A1-int LTR MaLR 1 1735 0 1581 160 12 113 chr4 108945700 108946106 -93382241 + MLT1A1 LTR MaLR 1 365 0 1062 183 100 86 chr4 108946107 108946467 -93381880 + MLT1A1 LTR MaLR 1 365 0 191 279 0 0 chr4 108946898 108946941 -93381406 - L2 LINE L2 -3 3310 3268 216 273 30 30 chr4 108946945 108947011 -93381336 + MIR SINE MIR 9 74 -188 274 195 62 97 chr4 108947470 108947499 -93380848 - MIR3 SINE MIR 0 208 180 2384 79 3 0 chr4 108947499 108947803 -93380544 + AluY SINE Alu 1 305 -6 274 195 62 97 chr4 108947803 108947886 -93380461 - MIR3 SINE MIR -28 180 100 1394 158 150 4 chr4 108947914 108948174 -93380173 + AluSx SINE Alu 1 298 -14 1625 126 49 27 chr4 108948742 108949005 -93379342 + AluJo SINE Alu 38 306 -6 180 194 56 0 chr4 108949012 108949048 -93379299 - MIR SINE MIR -150 112 75 10924 216 21 30 chr4 108949099 108952100 -93376247 - L1P LINE L1 -1624 4522 1550 8804 209 49 23 chr4 108952218 108954430 -93373917 - L1MCa LINE L1 -985 5441 3287 1734 181 7 4 chr4 108954430 108954740 -93373607 - AluJb SINE Alu 0 311 1 8804 209 49 23 chr4 108954740 108955184 -93373163 - L1MCa LINE L1 -3139 3287 2856 616 200 58 0 chr4 108955184 108955304 -93373043 - FLAM_A SINE Alu -6 127 1 8804 209 49 23 chr4 108955304 108955854 -93372493 - L1MCa LINE L1 -3570 2856 2322 2129 105 34 3 chr4 108955854 108956149 -93372198 - AluSq SINE Alu -9 304 1 8804 209 49 23 chr4 108956149 108957001 -93371346 - L1MCa LINE L1 -4104 2322 1180 1738 156 73 0 chr4 108957110 108957424 -93370923 + MER1B DNA MER1_type 1 337 0 484 251 148 36 chr4 108958338 108958561 -93369786 + MIR SINE MIR 5 252 -10 1617 136 44 4 chr4 108958985 108959258 -93369089 - AluJb SINE Alu -28 284 1 22 70 0 0 chr4 108959849 108959892 -93368455 + AT_rich Low_complexity Low_complexity 1 43 0 2403 158 3 42 chr4 108960698 108961216 -93367131 + THE1C-int LTR MaLR 1172 1735 0 1676 149 39 82 chr4 108961219 108961608 -93366739 + THE1C LTR MaLR 4 375 0 4284 154 38 56 chr4 108961989 108962301 -93366046 + L1MB3 LINE L1 5013 5329 -854 1364 165 124 0 chr4 108962301 108962568 -93365779 + AluJo SINE Alu 2 301 -11 4284 154 38 56 chr4 108962568 108963426 -93364921 + L1MB3 LINE L1 5329 6173 -10 431 259 90 13 chr4 108963458 108963703 -93364644 + L1ME LINE L1 1460 1666 -4549 2401 250 79 34 chr4 108963769 108964339 -93364008 + L1ME LINE L1 4220 4763 -1470 1745 166 20 27 chr4 108964339 108964634 -93363713 + AluJo SINE Alu 1 293 -19 2401 250 79 34 chr4 108964634 108965367 -93362980 + L1ME LINE L1 4763 5581 -652 689 234 5 49 chr4 108965389 108965573 -93362774 + MIR SINE MIR 53 228 -34 268 277 91 6 chr4 108965578 108965739 -93362608 - MIR SINE MIR -64 198 23 216 315 56 22 chr4 108966005 108966094 -93362253 + L2 LINE L2 2942 3033 -280 200 255 52 105 chr4 108966140 108966293 -93362054 + L2 LINE L2 3169 3313 0 1888 98 74 57 chr4 108966459 108966825 -93361522 + THE1C LTR MaLR 1 372 -3 10023 106 53 14 chr4 108966825 108968346 -93360001 + THE1C-int LTR MaLR 1 1580 0 1362 142 183 22 chr4 108968346 108968669 -93359678 + THE1C LTR MaLR 1 375 0 22 56 0 0 chr4 108969139 108969175 -93359172 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr4 108970290 108970314 -93358033 + AT_rich Low_complexity Low_complexity 1 24 0 2421 250 69 32 chr4 108970918 108972095 -93356252 + L1M4 LINE L1 3186 4405 -1741 1653 182 89 56 chr4 108972096 108972524 -93355823 - MSTB2 LTR MaLR 0 457 16 4966 210 48 111 chr4 108972528 108974290 -93354057 - MSTB2-int LTR MaLR 0 1651 1 1714 196 90 17 chr4 108974290 108974703 -93353644 - MSTB2 LTR MaLR 0 457 15 308 180 90 0 chr4 108974708 108974797 -93353550 + L1M4 LINE L1 4409 4505 -1641 1198 87 130 11 chr4 108974897 108975081 -93353266 + AluSc SINE Alu 96 301 -8 258 32 0 0 chr4 108975081 108975112 -93353235 + (TA)n Simple_repeat Simple_repeat 2 32 0 365 324 0 9 chr4 108975233 108975338 -93353009 - LTR67 LTR ERVL -405 152 49 1572 185 10 38 chr4 108975360 108975674 -93352673 + AluJo SINE Alu 1 305 -7 1246 278 91 34 chr4 108975734 108976402 -93351945 - L1MDa LINE L1 -2364 4176 3548 2228 113 0 13 chr4 108976402 108976711 -93351636 - AluSx SINE Alu -3 309 5 1246 278 91 34 chr4 108976711 108977301 -93351046 - L1MDa LINE L1 -2992 3548 2846 257 220 68 0 chr4 108977482 108977600 -93350747 - L1MDa LINE L1 -3931 2609 2484 30 0 0 0 chr4 108977750 108977780 -93350567 + AT_rich Low_complexity Low_complexity 1 30 0 693 263 22 13 chr4 108977878 108978102 -93350245 - L1ME1 LINE L1 -5 6161 5936 1247 117 45 0 chr4 108978123 108978302 -93350045 + AluSq SINE Alu 1 187 -126 25035 93 23 9 chr4 108978304 108982106 -93346241 - L1P LINE L1 -2283 3863 11 2153 226 46 10 chr4 108982139 108982767 -93345580 - L1ME1 LINE L1 -969 5177 4527 207 100 0 0 chr4 108982881 108982911 -93345436 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 831 202 43 93 chr4 108983307 108983376 -93344971 + MER34B LTR ERV1 12 83 -482 2299 105 0 16 chr4 108983376 108983690 -93344657 + AluSg SINE Alu 1 309 -1 831 202 43 93 chr4 108983690 108983922 -93344425 + MER34B LTR ERV1 83 298 -267 1291 108 6 0 chr4 108984022 108984198 -93344149 + AluSq SINE Alu 132 308 -5 2406 61 10 0 chr4 108984201 108984495 -93343852 + AluY SINE Alu 1 297 -14 1791 182 7 0 chr4 108985333 108985630 -93342717 + AluSx SINE Alu 6 304 -8 582 236 130 6 chr4 108986140 108986301 -93342046 + MER5A DNA MER1_type 1 181 -8 418 156 62 0 chr4 108986446 108986536 -93341811 + AluJ/FRAM SINE Alu 217 310 0 3868 174 28 7 chr4 108986536 108987285 -93341062 - L1MB3 LINE L1 -7 6176 5412 48 53 0 0 chr4 108987287 108987363 -93340984 + AT_rich Low_complexity Low_complexity 1 76 0 342 86 99 12 chr4 108987363 108987525 -93340822 + (TA)n Simple_repeat Simple_repeat 1 176 0 1884 166 0 3 chr4 108987822 108988117 -93340230 + AluJb SINE Alu 1 294 -18 290 146 64 0 chr4 108988117 108988227 -93340120 + (TA)n Simple_repeat Simple_repeat 2 118 0 23 78 0 0 chr4 108988595 108988646 -93339701 + AT_rich Low_complexity Low_complexity 1 51 0 294 167 0 0 chr4 108988876 108988924 -93339423 - HERVL40 LTR ERVL -2961 2569 2522 348 222 51 68 chr4 108989077 108989194 -93339153 - HERVL40 LTR ERVL -4103 1427 1313 1577 91 10 0 chr4 108989573 108989782 -93338565 - AluSp SINE Alu -16 297 87 324 70 0 0 chr4 108989782 108989825 -93338522 - AluSp SINE Alu -257 43 1 867 238 17 38 chr4 108989854 108990089 -93338258 - HERVL40 LTR ERVL -4664 866 637 30 0 0 0 chr4 108990257 108990287 -93338060 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr4 108990341 108990375 -93337972 + AT_rich Low_complexity Low_complexity 1 34 0 773 256 33 47 chr4 108990588 108990803 -93337544 + MIR SINE MIR 13 224 -38 961 234 117 81 chr4 108990994 108991150 -93337197 - MLT1D LTR MaLR 0 505 356 806 154 0 22 chr4 108991150 108991286 -93337061 - FLAM_C SINE Alu 0 133 1 961 234 117 81 chr4 108991286 108991598 -93336749 - MLT1D LTR MaLR -149 356 20 213 159 65 47 chr4 108991789 108991896 -93336451 + (TATAA)n Simple_repeat Simple_repeat 2 110 0 338 313 106 5 chr4 108991929 108992146 -93336201 + L1M4 LINE L1 3622 3860 -2286 1976 117 28 3 chr4 108992345 108992636 -93335711 - AluSx SINE Alu -14 298 1 916 147 0 0 chr4 108993099 108993228 -93335119 - FLAM_C SINE Alu -3 130 2 2225 99 0 16 chr4 108993314 108993618 -93334729 + AluSg SINE Alu 1 299 -11 313 270 66 15 chr4 108993721 108993858 -93334489 - L1MB8 LINE L1 -1 6177 6034 2190 110 0 26 chr4 108993879 108994188 -93334159 - AluSx SINE Alu -11 301 1 2242 74 32 0 chr4 108995149 108995432 -93332915 - AluSc SINE Alu -17 292 1 279 180 16 0 chr4 108995604 108995665 -93332682 - AluJ/FLAM SINE Alu -240 62 1 365 294 55 0 chr4 108996174 108996283 -93332064 - L2 LINE L2 -4 3309 3195 600 187 148 84 chr4 108997386 108997589 -93330758 - MIR SINE MIR -32 230 15 1815 131 39 14 chr4 108997930 108998213 -93330134 - AluJo SINE Alu -22 290 1 492 182 149 25 chr4 108998474 108998595 -93329752 + FLAM_C SINE Alu 3 138 -5 305 197 26 0 chr4 108998722 108998798 -93329549 + L1MC5 LINE L1 7701 7778 -183 190 291 0 0 chr4 108998913 108998968 -93329379 + MIR SINE MIR 152 206 -56 315 287 23 0 chr4 108999210 108999297 -93329050 + L1MC4 LINE L1 6615 6703 -1339 513 225 0 0 chr4 108999298 108999418 -93328929 + (TA)n Simple_repeat Simple_repeat 1 120 0 333 303 0 0 chr4 108999422 108999511 -93328836 + L1MC4 LINE L1 6615 6703 -1339 2463 83 0 0 chr4 108999633 108999933 -93328414 - AluSg SINE Alu -10 300 1 21 36 0 0 chr4 109000121 109000149 -93328198 + AT_rich Low_complexity Low_complexity 1 28 0 247 249 41 96 chr4 109000612 109000809 -93327538 - L1M4 LINE L1 -785 5361 5176 1617 109 0 0 chr4 109000825 109001060 -93327287 - AluSg/x SINE Alu 0 311 77 1800 134 34 4 chr4 109001729 109001991 -93326356 + AluSx SINE Alu 1 270 -42 874 124 0 0 chr4 109002000 109002121 -93326226 + AluSg/x SINE Alu 176 296 -16 852 39 0 0 chr4 109002691 109002795 -93325552 + (TC)n Simple_repeat Simple_repeat 2 105 0 2236 101 3 0 chr4 109002795 109003083 -93325264 - AluSq SINE Alu -24 289 1 319 320 58 68 chr4 109003258 109003552 -93324795 - L1MC/D LINE L1 -2108 5677 5387 344 281 0 0 chr4 109004525 109004607 -93323740 + (CCA)n Simple_repeat Simple_repeat 3 84 0 181 258 16 16 chr4 109004769 109004831 -93323516 + L2 LINE L2 1355 1416 -1898 186 43 0 0 chr4 109004903 109004926 -93323421 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 2295 106 0 0 chr4 109004930 109005233 -93323114 - AluSx SINE Alu -9 303 1 290 73 0 0 chr4 109005421 109005462 -93322885 - Alu SINE Alu -261 41 1 2051 141 3 0 chr4 109005463 109005762 -93322585 - AluSx SINE Alu -12 300 1 2182 99 7 0 chr4 109005983 109006275 -93322072 + AluSx SINE Alu 1 294 -18 469 203 25 6 chr4 109006639 109006797 -93321550 + GA-rich Low_complexity Low_complexity 2 162 0 977 122 7 0 chr4 109008079 109008226 -93320121 + MLT1B LTR MaLR 243 390 0 353 200 56 11 chr4 109008391 109008481 -93319866 + MER58B DNA MER1_type 247 340 -1 1117 79 7 0 chr4 109009490 109009629 -93318718 + AluSg/x SINE Alu 159 298 -12 183 360 0 0 chr4 109009756 109009806 -93318541 + MIR SINE MIR 205 254 -8 1210 110 0 0 chr4 109010380 109010535 -93317812 + AluSq SINE Alu 1 155 -158 1393 200 24 89 chr4 109010880 109011337 -93317010 - MLT1C LTR MaLR 0 467 43 2097 116 10 7 chr4 109011337 109011638 -93316709 - AluSx SINE Alu -10 302 1 1393 200 24 89 chr4 109011638 109011674 -93316673 - MLT1C LTR MaLR -424 43 6 31 76 0 0 chr4 109011709 109011775 -93316572 + AT_rich Low_complexity Low_complexity 1 66 0 201 189 57 19 chr4 109012009 109012062 -93316285 - MIR3 SINE MIR -45 163 109 633 215 33 0 chr4 109012112 109012233 -93316114 - FLAM_A SINE Alu -8 125 1 1061 194 13 84 chr4 109012483 109012782 -93315565 + AluJo SINE Alu 20 297 -15 286 331 25 42 chr4 109013449 109013616 -93314731 + MIR SINE MIR 19 192 -62 458 280 101 63 chr4 109015038 109015306 -93313041 - L1MC/D LINE L1 -2216 5592 5315 2189 145 38 3 chr4 109015308 109015680 -93312667 - L1PA15 LINE L1 0 6165 5781 851 207 0 5 chr4 109015691 109015894 -93312453 - L1PA15 LINE L1 -1248 4898 4697 * 2260 115 30 0 chr4 109015891 109016255 -93312092 - L1P4 LINE L1 -346 5819 5445 525 181 30 30 chr4 109016239 109016372 -93311975 + L1P4 LINE L1 5535 5667 -507 * 547 59 0 0 chr4 109016472 109016540 -93311807 + AluSq/x SINE Alu 70 137 -175 2248 91 0 7 chr4 109016542 109016838 -93311509 + AluSg SINE Alu 4 297 -13 1877 113 58 113 chr4 109016838 109017227 -93311120 + Tigger3(Golem) DNA MER2_type 202 611 -2418 2275 88 0 26 chr4 109017227 109017535 -93310812 + AluSx SINE Alu 1 300 -12 1877 113 58 113 chr4 109017535 109017823 -93310524 + Tigger3(Golem) DNA MER2_type 611 2642 -387 1284 151 0 0 chr4 109020559 109020745 -93307602 + AluJo SINE Alu 1 186 -126 1622 98 37 0 chr4 109020846 109021061 -93307286 + AluSg/x SINE Alu 67 289 -23 1785 147 3 21 chr4 109021891 109022177 -93306170 - AluJb SINE Alu -30 282 2 602 26 39 0 chr4 109022481 109022558 -93305789 - AluY SINE Alu -14 297 218 21 36 0 0 chr4 109023349 109023377 -93304970 + AT_rich Low_complexity Low_complexity 1 28 0 2075 133 7 0 chr4 109023787 109024080 -93304267 - AluSx SINE Alu -15 297 3 298 288 90 61 chr4 109024110 109024388 -93303959 - L1ME LINE L1 -457 5664 5379 2096 159 84 51 chr4 109024533 109024943 -93303404 - L1M3 LINE L1 -366 5817 5422 1426 202 54 7 chr4 109024943 109025240 -93303107 - AluJo SINE Alu -1 311 1 2096 159 84 51 chr4 109025240 109025297 -93303050 - L1M3 LINE L1 -761 5422 5368 2070 148 0 0 chr4 109025297 109025594 -93302753 - AluSx SINE Alu -15 297 1 2096 159 84 51 chr4 109025594 109025686 -93302661 - L1M3 LINE L1 -815 5368 5241 705 158 68 8 chr4 109027829 109027962 -93300385 + MER5A DNA MER1_type 49 189 0 2411 41 3 3 chr4 109028676 109028971 -93299376 - AluY SINE Alu -16 295 1 416 164 21 7 chr4 109029040 109029180 -93299167 + (TA)n Simple_repeat Simple_repeat 1 142 0 2225 84 18 0 chr4 109029180 109029464 -93298883 - AluSq SINE Alu -24 289 1 247 235 147 0 chr4 109029813 109029881 -93298466 - MER63 DNA MER1_type 0 1062 985 * 395 221 9 44 chr4 109029879 109029992 -93298355 - MER63 DNA MER1_type -76 760 26 1393 164 75 20 chr4 109030122 109030414 -93297933 + AluJo SINE Alu 1 308 -4 1895 103 60 18 chr4 109030884 109031165 -93297182 - AluSg SINE Alu -17 293 1 1125 118 0 35 chr4 109031444 109031613 -93296734 - AluSg/x SINE Alu -20 290 128 340 157 12 48 chr4 109031931 109032014 -93296333 - L1ME2 LINE L1 0 6164 6085 213 154 0 0 chr4 109033322 109033361 -93294986 + C-rich Low_complexity Low_complexity 4 42 0 2271 99 7 0 chr4 109033703 109033996 -93294351 - AluSq SINE Alu -18 295 1 5394 161 12 7 chr4 109035527 109036616 -93291731 + L1MC1 LINE L1 5158 6251 -82 3064 153 33 0 chr4 109036617 109037160 -93291187 - L1PA11 LINE L1 0 6174 5614 301 233 133 89 chr4 109040798 109040978 -93287369 + L1MDa LINE L1 1803 1990 -4550 1821 151 17 17 chr4 109041722 109042013 -93286334 - AluJo SINE Alu -21 291 1 1821 159 0 17 chr4 109042094 109042390 -93285957 + AluJb SINE Alu 1 291 -21 279 263 44 136 chr4 109043349 109043577 -93284770 - L2 LINE L2 -80 3192 2986 394 311 89 0 chr4 109044244 109044379 -93283968 + L2 LINE L2 3163 3309 -4 492 123 0 0 chr4 109044456 109044529 -93283818 - MLT1A2 LTR MaLR 0 374 302 21 57 0 0 chr4 109044695 109044730 -93283617 + AT_rich Low_complexity Low_complexity 1 35 0 760 29 10 39 chr4 109046637 109046741 -93281606 + L1PA7 LINE L1 6050 6150 -4 248 159 0 63 chr4 109046801 109046864 -93281483 + GA-rich Low_complexity Low_complexity 3 61 0 2319 75 7 0 chr4 109048823 109049115 -93279232 - AluSx SINE Alu -18 294 1 809 122 8 0 chr4 109049943 109050066 -93278281 - L1MB3 LINE L1 -9 6174 6051 849 143 0 14 chr4 109050067 109050207 -93278140 - FRAM SINE Alu -5 171 34 635 173 8 8 chr4 109050207 109050334 -93278013 - L1MB2 LINE L1 -114 6057 5931 234 274 0 16 chr4 109050753 109050815 -93277532 - MIR SINE MIR -46 216 156 23 68 0 0 chr4 109051021 109051065 -93277282 + AT_rich Low_complexity Low_complexity 1 44 0 180 286 33 66 chr4 109051795 109051886 -93276461 - MER5A DNA MER1_type 0 189 102 778 195 16 43 chr4 109052184 109052369 -93275978 - MER58A DNA MER1_type -1 223 44 277 254 16 0 chr4 109054366 109054429 -93273918 - L2 LINE L2 -5 3308 3245 764 173 0 0 chr4 109054853 109054980 -93273367 - FLAM_C SINE Alu -2 131 5 712 192 5 114 chr4 109055717 109055840 -93272507 + MER5B DNA MER1_type 1 136 -42 1950 91 0 8 chr4 109055840 109056103 -93272244 - AluSc SINE Alu -11 298 38 712 192 5 114 chr4 109056103 109056133 -93272214 + MER5B DNA MER1_type 136 134 -44 1452 160 46 43 chr4 109056133 109056437 -93271910 + AluJo SINE Alu 1 305 0 712 192 5 114 chr4 109056437 109056474 -93271873 + MER5B DNA MER1_type 133 172 -6 273 245 274 0 chr4 109056510 109056612 -93271735 + MER5A DNA MER1_type 59 188 -1 784 209 43 0 chr4 109056622 109056785 -93271562 - MER58B DNA MER1_type 0 341 172 5784 31 3 1 chr4 109056850 109057537 -93270810 + L1PA4 LINE L1 5466 6153 -2 2457 66 0 3 chr4 109057939 109058242 -93270105 - AluY SINE Alu -9 302 1 2327 114 0 0 chr4 109058379 109058686 -93269661 - AluSq SINE Alu -6 307 1 1064 146 86 193 chr4 109058708 109059127 -93269220 + MER63 DNA MER1_type 1 504 -556 1068 177 86 108 chr4 109059136 109059412 -93268935 + MER63 DNA MER1_type 676 956 -105 312 102 0 0 chr4 109059412 109059461 -93268886 + (CA)n Simple_repeat Simple_repeat 2 50 0 1848 143 25 11 chr4 109059463 109059743 -93268604 - AluJb SINE Alu -26 286 3 1068 177 86 108 chr4 109059743 109059835 -93268512 + MER63 DNA MER1_type 957 1039 -22 196 345 17 0 chr4 109061230 109061288 -93267059 - L2 LINE L2 0 3272 3214 285 340 70 13 chr4 109061614 109061770 -93266577 - MIR3 SINE MIR -4 204 40 189 331 61 54 chr4 109062585 109062733 -93265614 + L2 LINE L2 3119 3267 -5 479 251 102 44 chr4 109062899 109063064 -93265283 + MIR SINE MIR 6 176 -65 182 309 71 12 chr4 109063060 109063144 -93265203 + L2 LINE L2 2918 3006 -307 * 521 335 25 5 chr4 109063199 109063402 -93264945 + L2 LINE L2 3105 3311 -2 911 220 0 0 chr4 109063998 109064171 -93264176 + FRAM SINE Alu 1 173 -3 291 127 36 0 chr4 109065496 109065551 -93262796 - L1MA9 LINE L1 -1 6311 6255 23 54 0 0 chr4 109065951 109065988 -93262359 + AT_rich Low_complexity Low_complexity 1 37 0 278 118 98 7 chr4 109065988 109066141 -93262206 + (TA)n Simple_repeat Simple_repeat 2 168 0 39 0 0 0 chr4 109066156 109066195 -93262152 + AT_rich Low_complexity Low_complexity 1 39 0 683 151 9 0 chr4 109066586 109066692 -93261655 + MER33 DNA MER1_type 21 127 -197 1453 138 71 44 chr4 109066696 109066993 -93261354 + L1MA9 LINE L1 6007 6311 -1 821 132 86 5 chr4 109067065 109067262 -93261085 + MER33 DNA MER1_type 150 362 -1 768 164 48 7 chr4 109067468 109067614 -93260733 - MLT1A1 LTR MaLR -213 152 1 587 186 0 0 chr4 109067710 109067807 -93260540 + AluJ/FLAM SINE Alu 3 99 -213 693 112 41 0 chr4 109067807 109067905 -93260442 + AluJo/FRAM SINE Alu 178 279 -33 24 32 0 0 chr4 109068354 109068385 -93259962 + AT_rich Low_complexity Low_complexity 1 31 0 296 320 34 19 chr4 109068797 109068910 -93259437 + MIR3 SINE MIR 55 177 -31 1318 235 100 15 chr4 109070803 109071194 -93257153 - MLT1J2 LTR MaLR -21 429 6 1979 120 0 0 chr4 109071273 109071539 -93256808 + AluSx SINE Alu 37 302 -10 304 299 86 26 chr4 109071643 109071760 -93256587 + L2 LINE L2 3149 3272 0 480 259 56 7 chr4 109072300 109072443 -93255904 - MLT1L LTR MaLR 0 615 466 901 70 86 0 chr4 109072802 109072930 -93255417 - MER85 DNA T2_type 0 139 1 1115 37 0 0 chr4 109074263 109074399 -93253948 + L1PA4 LINE L1 6017 6152 -3 180 0 0 0 chr4 109074446 109074466 -93253881 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 848 123 8 0 chr4 109074471 109074593 -93253754 - FLAM_C SINE Alu -10 123 1 25 0 0 0 chr4 109074876 109074901 -93253446 + AT_rich Low_complexity Low_complexity 1 25 0 268 333 0 10 chr4 109075204 109075300 -93253047 + MLT1J LTR MaLR 3 97 -414 21 0 0 0 chr4 109075496 109075517 -93252830 + AT_rich Low_complexity Low_complexity 1 21 0 583 265 106 6 chr4 109077291 109077461 -93250886 - MIR SINE MIR -2 260 74 238 311 78 0 chr4 109077639 109077742 -93250605 - L2 LINE L2 -933 2381 2271 248 297 117 59 chr4 109077928 109078201 -93250146 - L2 LINE L2 -1320 1994 1706 28 29 0 0 chr4 109078201 109078236 -93250111 + AT_rich Low_complexity Low_complexity 1 35 0 1925 118 86 0 chr4 109078241 109078555 -93249792 - L1MB2 LINE L1 -3 6168 5828 472 272 46 23 chr4 109079720 109079893 -93248454 - L1MC4a LINE L1 -1929 5879 5703 1246 268 118 25 chr4 109079953 109080628 -93247719 + LTR41 LTR ERVL 2 763 -10 468 111 40 71 chr4 109080851 109080950 -93247397 + L1P LINE L1 4016 4111 -2035 1134 201 31 128 chr4 109081872 109082286 -93246061 - MLT1A2 LTR MaLR 0 374 1 2135 94 17 0 chr4 109082730 109083028 -93245319 + AluSq SINE Alu 1 303 -10 207 348 83 28 chr4 109083068 109083249 -93245098 + L3b LINE CR1 1283 1473 -110 1979 135 3 10 chr4 109083274 109083408 -93244939 + AluSx SINE Alu 1 134 -173 2235 95 20 20 chr4 109083408 109083714 -93244633 + AluSc SINE Alu 1 306 -3 1979 135 3 10 chr4 109083714 109083888 -93244459 + AluSx SINE Alu 134 307 0 1996 118 3 3 chr4 109084344 109084631 -93243716 + AluSx SINE Alu 1 287 -25 284 212 45 0 chr4 109085593 109085659 -93242688 - MIR SINE MIR -98 164 96 223 235 29 0 chr4 109085976 109086044 -93242303 + (TA)n Simple_repeat Simple_repeat 1 70 0 248 286 121 0 chr4 109086200 109086291 -93242056 + L2 LINE L2 3163 3264 -8 604 310 63 37 chr4 109086463 109086763 -93241584 - MLT1J LTR MaLR -107 404 97 1996 118 68 0 chr4 109088031 109088369 -93239978 - MER46B DNA MER2_type 0 236 1 262 300 25 0 chr4 109088768 109088848 -93239499 + MIR3 SINE MIR 96 177 -31 1855 161 3 7 chr4 109088962 109089260 -93239087 - AluSx SINE Alu -15 297 1 410 359 60 16 chr4 109090150 109090334 -93238013 - MIR SINE MIR -70 192 1 239 233 155 39 chr4 109090460 109090563 -93237784 - MIR SINE MIR -145 117 3 2274 94 3 3 chr4 109090746 109091045 -93237302 - AluSg SINE Alu -11 299 1 275 281 52 59 chr4 109091062 109091197 -93237150 + MIR SINE MIR 58 191 -71 284 240 131 3 chr4 109091756 109091898 -93236449 + L1ME LINE L1 5321 5478 -821 689 211 102 0 chr4 109091914 109092080 -93236267 + MER5A DNA MER1_type 1 183 -6 579 256 121 48 chr4 109092068 109092364 -93235983 + L1ME LINE L1 5475 5790 -331 * 403 260 136 30 chr4 109092870 109093039 -93235308 + MIR SINE MIR 5 191 -71 24 32 0 0 chr4 109093334 109093365 -93234982 + AT_rich Low_complexity Low_complexity 1 31 0 486 263 167 35 chr4 109093557 109093904 -93234443 + L1MC/D LINE L1 5277 5577 -2231 452 185 166 19 chr4 109093904 109094061 -93234286 + MER104 DNA MER2_type 1 180 0 486 263 167 35 chr4 109094061 109094233 -93234114 + L1MC/D LINE L1 5577 5904 -1904 248 331 162 14 chr4 109094823 109094971 -93233376 + MIR SINE MIR 20 189 -73 593 248 7 15 chr4 109095214 109095351 -93232996 + MIR SINE MIR 20 155 -107 317 221 39 13 chr4 109095389 109095466 -93232881 + MER3 DNA MER1_type 1 79 -130 262 125 50 0 chr4 109095437 109095477 -93232870 - MER33 DNA MER1_type -276 48 7 * 201 74 0 0 chr4 109095506 109095533 -93232814 + (TATG)n Simple_repeat Simple_repeat 2 28 0 489 170 53 11 chr4 109095533 109095627 -93232720 - FLAM_A SINE Alu -25 117 20 21 0 0 0 chr4 109096288 109096309 -93232038 + AT_rich Low_complexity Low_complexity 1 21 0 240 256 50 0 chr4 109096615 109096686 -93231661 - MER5A DNA MER1_type -37 141 76 488 280 8 8 chr4 109096880 109096998 -93231349 - MER5B DNA MER1_type -60 118 1 374 89 18 0 chr4 109097457 109097513 -93230834 + U2 snRNA snRNA 4 60 -128 3336 30 0 2 chr4 109098496 109098900 -93229447 - L1PA4 LINE L1 0 6155 5753 1016 245 14 0 chr4 109099278 109099486 -93228861 - MIR SINE MIR -21 241 31 672 222 71 52 chr4 109100269 109100481 -93227866 - MIR SINE MIR -40 222 7 2306 108 0 3 chr4 109100833 109101140 -93227207 + AluSx SINE Alu 1 306 -6 23 33 0 0 chr4 109101668 109101698 -93226649 + AT_rich Low_complexity Low_complexity 1 30 0 2302 117 0 0 chr4 109103393 109103702 -93224645 - AluSq SINE Alu -4 309 1 376 239 137 17 chr4 109103975 109104092 -93224255 - MIR3 SINE MIR -41 167 37 463 224 83 101 chr4 109104330 109104607 -93223740 - MLT1J LTR MaLR -140 371 100 180 320 126 18 chr4 109104910 109105132 -93223215 - L2 LINE L2 -562 2752 2507 1079 275 68 22 chr4 109105286 109105730 -93222617 + LTR16B LTR ERVL 1 464 0 362 261 118 0 chr4 109106984 109107103 -93221244 + MLT1J LTR MaLR 305 437 -74 354 254 71 100 chr4 109107510 109107790 -93220557 + MLT1J LTR MaLR 100 371 -140 428 258 100 21 chr4 109107886 109108126 -93220221 + MIR SINE MIR 1 259 -3 358 197 0 0 chr4 109108652 109108713 -93219634 + L2 LINE L2 3250 3310 -3 2085 172 122 5 chr4 109108769 109109194 -93219153 + MLT2B2 LTR ERVL 1 475 -40 25 0 0 0 chr4 109109194 109109219 -93219128 + AT_rich Low_complexity Low_complexity 1 25 0 1717 163 57 115 chr4 109109219 109109655 -93218692 - MER47B DNA MER2_type -7 411 1 281 159 0 0 chr4 109109655 109109694 -93218653 + MLT2B2 LTR ERVL 474 512 -8 4412 190 91 33 chr4 109109699 109109823 -93218524 + ERVL-B2 LTR ERVL 2 117 -5647 1161 181 173 0 chr4 109109823 109110066 -93218281 - AluJo SINE Alu -17 285 1 4412 190 91 33 chr4 109110066 109110208 -93218139 + ERVL-B2 LTR ERVL 117 249 -5515 2321 92 3 0 chr4 109110208 109110503 -93217844 - AluSg SINE Alu -14 296 1 4412 190 91 33 chr4 109110503 109110869 -93217478 + ERVL-B2 LTR ERVL 249 592 -5172 1864 144 27 3 chr4 109110869 109111167 -93217180 - AluJb SINE Alu -7 305 1 4412 190 91 33 chr4 109111167 109111530 -93216817 + ERVL-B2 LTR ERVL 592 1057 -4707 270 229 17 0 chr4 109111530 109111618 -93216729 + L1M4c LINE L1 1277 1772 -4531 6540 219 85 41 chr4 109111825 109112378 -93215969 - L1MCa LINE L1 -1873 4553 4026 2012 93 48 0 chr4 109112378 109112671 -93215676 - AluSg SINE Alu 0 306 1 6540 219 85 41 chr4 109112671 109115689 -93212658 - L1MCa LINE L1 -2400 4026 728 2643 184 62 25 chr4 109115722 109116242 -93212105 - L1MCa LINE L1 -5811 615 69 2267 76 3 20 chr4 109116242 109116544 -93211803 - AluSc SINE Alu -9 300 4 2643 184 62 25 chr4 109116544 109116615 -93211732 - L1MCa LINE L1 -6357 69 2 377 209 91 9 chr4 109117961 109118071 -93210276 - Tigger7 DNA MER2_type -38 2449 2331 836 172 40 0 chr4 109118183 109118334 -93210013 + ERVL LTR ERVL 916 1072 -4692 413 219 25 0 chr4 109118335 109118441 -93209906 + L1M4c LINE L1 1292 1781 -4522 250 235 59 0 chr4 109119104 109119172 -93209175 + MIR3 SINE MIR 112 183 -25 27 49 0 0 chr4 109120391 109120432 -93207915 + AT_rich Low_complexity Low_complexity 1 41 0 413 186 134 41 chr4 109120749 109120846 -93207501 + FLAM_A SINE Alu 1 106 -27 485 329 157 30 chr4 109121303 109122056 -93206291 + L2 LINE L2 2451 3313 0 28 0 0 0 chr4 109122801 109122829 -93205518 + AT_rich Low_complexity Low_complexity 1 28 0 567 368 108 19 chr4 109123184 109123741 -93204606 + L2 LINE L2 2413 3015 -257 433 148 193 0 chr4 109123751 109123839 -93204508 - Tigger1 DNA MER2_type -1 2417 2313 183 329 142 13 chr4 109124783 109124938 -93203409 + L2 LINE L2 2450 2624 -690 221 274 0 0 chr4 109125690 109125741 -93202606 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 395 258 31 13 chr4 109125822 109125981 -93202366 + (TA)n Simple_repeat Simple_repeat 2 163 0 238 209 75 0 chr4 109126061 109126128 -93202219 - L1MCa LINE L1 -4358 2068 1997 345 188 0 0 chr4 109126129 109126209 -93202138 + (TA)n Simple_repeat Simple_repeat 1 80 0 246 250 48 0 chr4 109126220 109126304 -93202043 - L1MC4 LINE L1 -1340 6702 6615 504 249 0 0 chr4 109126305 109126951 -93201396 + (TA)n Simple_repeat Simple_repeat 1 646 0 214 134 74 20 chr4 109127082 109127231 -93201116 + (TA)n Simple_repeat Simple_repeat 2 158 0 2352 98 0 0 chr4 109128496 109128801 -93199546 - AluSq SINE Alu -8 305 1 2223 58 4 7 chr4 109129095 109129372 -93198975 - AluY SINE Alu -9 302 27 234 0 0 0 chr4 109129619 109129645 -93198702 + (CA)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr4 109129836 109129864 -93198483 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr4 109130058 109130093 -93198254 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr4 109130304 109130335 -93198012 + AT_rich Low_complexity Low_complexity 1 31 0 4589 186 110 3 chr4 109130530 109130985 -93197362 - L1MC2 LINE L1 -22 6322 5917 2211 116 3 3 chr4 109130985 109131295 -93197052 - AluSx SINE Alu -2 310 1 4589 186 110 3 chr4 109131295 109132168 -93196179 - L1MC2 LINE L1 -427 5917 4873 685 224 151 119 chr4 109132170 109132715 -93195632 + L2 LINE L2 2752 3312 -1 282 310 30 10 chr4 109132828 109132928 -93195419 - L1MC2 LINE L1 -1978 4168 4067 23 0 0 0 chr4 109133308 109133331 -93195016 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr4 109133469 109133491 -93194856 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 512 186 0 0 chr4 109134111 109134197 -93194150 - AluSg/x SINE Alu -20 290 205 180 0 0 0 chr4 109134376 109134396 -93193951 + (CA)n Simple_repeat Simple_repeat 2 21 0 2292 103 0 0 chr4 109135016 109135306 -93193041 - AluSx SINE Alu -18 294 5 268 273 0 0 chr4 109135706 109135783 -93192564 - L1M4 LINE L1 -1148 4998 4922 1532 172 16 53 chr4 109135811 109136114 -93192233 - AluJb SINE Alu 0 312 21 4256 160 65 3 chr4 109137404 109138128 -93190219 + Tigger7 DNA MER2_type 2 770 -1717 1822 122 67 3 chr4 109138128 109138440 -93189907 + Tigger7 DNA MER2_type 2218 2549 -38 2555 185 76 28 chr4 109139781 109139852 -93188495 + L1MC1 LINE L1 1 67 -6359 2293 73 3 20 chr4 109139852 109140154 -93188193 + AluSc SINE Alu 4 300 -9 2555 185 76 28 chr4 109140154 109140688 -93187659 + L1MC1 LINE L1 67 635 -5791 5668 175 56 25 chr4 109140847 109142480 -93185867 + L1MC1 LINE L1 4913 6607 -6 219 36 0 0 chr4 109143156 109143184 -93185163 + (TA)n Simple_repeat Simple_repeat 1 28 0 659 187 32 0 chr4 109143419 109143542 -93184805 - FLAM_A SINE Alu -6 127 1 285 302 104 38 chr4 109144282 109144494 -93183853 + L2 LINE L2 2252 2477 -837 2435 65 3 10 chr4 109144551 109144858 -93183489 + AluY SINE Alu 1 305 -6 657 344 82 49 chr4 109145015 109145950 -93182397 + L2 LINE L2 1795 2760 -554 285 237 13 40 chr4 109147293 109147369 -93180978 + MIR SINE MIR 24 97 -165 8975 70 4 2 chr4 109147475 109148713 -93179634 + L1P LINE L1 2977 4216 -1930 2514 102 3 6 chr4 109149162 109149525 -93178822 - L1PB3 LINE L1 -7 6147 5786 210 143 0 0 chr4 109149528 109149563 -93178784 + (TATATG)n Simple_repeat Simple_repeat 5 39 0 242 215 22 30 chr4 109149626 109149761 -93178586 + (TA)n Simple_repeat Simple_repeat 2 135 0 595 130 70 0 chr4 109149801 109149901 -93178446 - L1PB3 LINE L1 -373 5781 5675 692 225 45 15 chr4 109149916 109150116 -93178231 - LTR37B LTR ERV1 -59 409 204 8044 38 5 1 chr4 109150551 109152311 -93176036 - L1PA5 LINE L1 0 6154 4391 390 251 207 39 chr4 109152924 109153103 -93175244 + MIR SINE MIR 41 249 -13 238 356 52 17 chr4 109153221 109153336 -93175011 + L3 LINE CR1 1390 1508 -69 235 333 147 0 chr4 109153377 109153479 -93174868 - L2 LINE L2 -22 3291 3175 * 1208 264 123 18 chr4 109153474 109153961 -93174386 + L2 LINE L2 2506 3048 -265 864 159 0 0 chr4 109154532 109154664 -93173683 + FLAM_C SINE Alu 1 132 -1 295 254 210 14 chr4 109156469 109156607 -93171740 - L1MC/D LINE L1 -2002 5806 5642 720 234 79 11 chr4 109157056 109157505 -93170842 - L1ME3 LINE L1 -8 6154 5539 345 262 121 82 chr4 109157924 109158206 -93170141 - L1MC/D LINE L1 -1985 5823 5531 2164 116 13 3 chr4 109158538 109158841 -93169506 + AluSc SINE Alu 1 306 -3 433 281 78 51 chr4 109159363 109159698 -93168649 - L1MC4a LINE L1 -1897 5911 5568 2197 81 0 0 chr4 109159723 109160046 -93168301 - AluY SINE Alu 0 323 1 505 337 135 41 chr4 109162090 109162869 -93165478 - L2 LINE L2 -23 3249 2364 22 70 0 0 chr4 109162903 109162946 -93165401 + AT_rich Low_complexity Low_complexity 1 43 0 2209 107 3 0 chr4 109163508 109163798 -93164549 - AluSx SINE Alu -17 295 5 444 297 51 51 chr4 109164363 109164558 -93163789 + L2 LINE L2 3119 3313 0 1303 224 135 24 chr4 109165365 109165781 -93162566 + MLT1C LTR MaLR 6 467 0 1930 159 0 9 chr4 109166108 109166423 -93161924 + AluJo SINE Alu 1 312 0 442 264 47 0 chr4 109166678 109166784 -93161563 + L2 LINE L2 3203 3313 0 234 177 95 61 chr4 109167903 109168050 -93160297 + L1ME1 LINE L1 4342 4493 -1653 * 2552 234 105 16 chr4 109168029 109168789 -93159558 + L1ME1 LINE L1 5334 6161 -5 936 240 124 0 chr4 109169123 109169340 -93159007 - MIR SINE MIR 0 262 19 24 0 0 0 chr4 109170544 109170568 -93157779 + AT_rich Low_complexity Low_complexity 1 24 0 1876 150 0 10 chr4 109171121 109171415 -93156932 - AluJb SINE Alu -14 298 8 4804 181 29 15 chr4 109171730 109173566 -93154781 + L1MB2 LINE L1 4313 6171 0 24 32 0 0 chr4 109175631 109175662 -93152685 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 109177419 109177443 -93150904 + AT_rich Low_complexity Low_complexity 1 24 0 250 256 45 30 chr4 109177646 109177779 -93150568 + L1M LINE L1 5284 5418 -2390 21 0 0 0 chr4 109177828 109177849 -93150498 + AT_rich Low_complexity Low_complexity 1 21 0 288 270 30 20 chr4 109178166 109178266 -93150081 + MER113 DNA MER1_type? 377 477 -44 1670 141 53 3 chr4 109178384 109178668 -93149679 - AluJb SINE Alu -14 298 1 363 254 36 27 chr4 109178756 109178866 -93149481 + MIR SINE MIR 127 237 -25 246 62 0 0 chr4 109179418 109179450 -93148897 + (A)n Simple_repeat Simple_repeat 1 32 0 869 154 151 109 chr4 109180300 109180611 -93147736 - MER33 DNA MER1_type 0 324 1 302 186 0 68 chr4 109180730 109180789 -93147558 - 5S rRNA rRNA -65 56 2 21 0 0 0 chr4 109181094 109181115 -93147232 + AT_rich Low_complexity Low_complexity 1 21 0 188 270 99 63 chr4 109181129 109181240 -93147107 + L2 LINE L2 452 566 -2748 780 147 0 8 chr4 109181511 109181640 -93146707 + FLAM_C SINE Alu 1 128 -5 234 91 0 0 chr4 109181689 109181722 -93146625 + (A)n Simple_repeat Simple_repeat 1 33 0 276 265 88 29 chr4 109181977 109182079 -93146268 - MIR3 SINE MIR -13 195 88 334 329 0 0 chr4 109182115 109182191 -93146156 - MIR SINE MIR -180 82 7 1219 335 18 23 chr4 109183349 109183952 -93144395 + L1M3a LINE L1 2 782 -5173 10092 214 66 60 chr4 109184660 109185403 -93142944 + L1MA8 LINE L1 2019 2756 -4954 5313 56 20 4 chr4 109185403 109186109 -93142238 + L1PA7 LINE L1 5447 6163 0 10092 214 66 60 chr4 109186109 109190731 -93137616 + L1MA8 LINE L1 2756 7709 -1 1152 106 24 12 chr4 109192656 109192826 -93135521 - AluSq SINE Alu -23 290 119 238 299 51 70 chr4 109193832 109194046 -93134301 + L2 LINE L2 1239 1448 -1866 783 289 164 43 chr4 109194142 109194819 -93133528 + L2 LINE L2 1836 2594 -720 614 280 63 34 chr4 109195122 109195361 -93132986 - MIR SINE MIR -2 260 15 220 346 13 25 chr4 109195656 109195742 -93132605 + MER5B DNA MER1_type 72 168 -21 230 221 29 29 chr4 109197547 109197615 -93130732 - MER113 DNA MER1_type? -47 474 407 1751 80 4 0 chr4 109197641 109197866 -93130481 - AluSp SINE Alu -4 309 84 846 216 60 40 chr4 109197870 109198171 -93130176 - MER113 DNA MER1_type? -209 312 6 743 263 82 45 chr4 109199286 109199666 -93128681 - L1MC4a LINE L1 -1741 6067 5674 288 225 70 93 chr4 109199672 109199801 -93128546 - MLT1H LTR MaLR 0 549 424 442 295 56 63 chr4 109200200 109200581 -93127766 - L1MC4a LINE L1 -1302 4844 4467 2226 123 0 0 chr4 109200581 109200883 -93127464 + AluSx SINE Alu 1 302 -10 442 295 56 63 chr4 109200883 109201105 -93127242 - L1MC4a LINE L1 -1679 4467 4245 642 306 113 58 chr4 109202105 109202668 -93125679 - L2 LINE L2 -2 3311 2720 1262 49 6 0 chr4 109202672 109202834 -93125513 - L1PA5 LINE L1 -4540 1606 1444 * 30500 38 3 2 chr4 109202833 109207366 -93120981 + L1PA5 LINE L1 1614 6152 -2 380 304 0 7 chr4 109207435 109207573 -93120774 - L2 LINE L2 -614 2700 2564 181 354 24 37 chr4 109207601 109207683 -93120664 + L2 LINE L2 3186 3266 -6 347 306 234 35 chr4 109208046 109208418 -93119929 - L2 LINE L2 -657 2657 2212 26 0 0 0 chr4 109208474 109208500 -93119847 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr4 109208935 109208970 -93119377 + AT_rich Low_complexity Low_complexity 1 35 0 225 0 0 0 chr4 109211816 109211841 -93116506 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2282 138 3 8 chr4 109212555 109212938 -93115409 + L1PA13 LINE L1 5781 6161 -2 252 184 0 0 chr4 109213722 109213771 -93114576 + MER4-int LTR ERV1 1111 1159 -5439 300 289 10 0 chr4 109214066 109214163 -93114184 + L1M4 LINE L1 2432 2529 -3617 253 271 14 0 chr4 109214366 109214436 -93113911 + (CTA)n Simple_repeat Simple_repeat 1 71 0 606 169 8 8 chr4 109214598 109214722 -93113625 + L1MA8 LINE L1 6168 6291 0 3504 162 91 47 chr4 109214838 109215234 -93113113 + L1MD2 LINE L1 5505 5882 -477 2126 109 3 3 chr4 109215234 109215528 -93112819 + AluSg SINE Alu 1 294 -16 3504 162 91 47 chr4 109215528 109215737 -93112610 + L1MD2 LINE L1 5882 6080 -279 327 49 0 0 chr4 109215737 109215778 -93112569 + (CA)n Simple_repeat Simple_repeat 1 41 0 3504 162 91 47 chr4 109215778 109215978 -93112369 + L1MD2 LINE L1 6080 6346 -13 252 0 0 0 chr4 109216215 109216243 -93112104 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 41181 64 3 2 chr4 109216261 109222409 -93105938 - L1PA5 LINE L1 -2 6152 1 2295 86 0 20 chr4 109222984 109223285 -93105062 - AluY SINE Alu -16 295 1 512 217 16 23 chr4 109223420 109223549 -93104798 + L1ME3A LINE L1 5642 5769 -401 234 289 103 32 chr4 109223586 109223742 -93104605 + L2 LINE L2 3065 3231 -82 325 341 16 32 chr4 109223900 109224026 -93104321 - MER45C DNA AcHobo -511 442 319 1272 261 27 21 chr4 109224080 109224409 -93103938 - MER45C DNA AcHobo -622 331 1 207 209 0 0 chr4 109224414 109224457 -93103890 + A-rich Low_complexity Low_complexity 3 45 0 882 238 93 14 chr4 109224497 109224787 -93103560 + L1ME3A LINE L1 5808 6120 -50 1735 221 6 0 chr4 109225078 109225404 -93102943 - MER58B DNA MER1_type -13 328 1 406 283 91 61 chr4 109226531 109226761 -93101586 - MER20B DNA MER1_type -546 237 1 2525 105 3 3 chr4 109227064 109227426 -93100921 - L1PB3 LINE L1 -7 6147 5786 210 143 0 0 chr4 109227429 109227464 -93100883 + (TATATG)n Simple_repeat Simple_repeat 5 39 0 242 215 22 30 chr4 109227527 109227662 -93100685 + (TA)n Simple_repeat Simple_repeat 2 135 0 594 130 70 0 chr4 109227702 109227802 -93100545 - L1PB3 LINE L1 -373 5781 5675 703 229 40 15 chr4 109227816 109228017 -93100330 - LTR37B LTR ERV1 -59 409 204 42265 38 22 1 chr4 109228452 109234478 -93093869 - L1PA2 LINE L1 0 6155 2 909 66 8 0 chr4 109234478 109234599 -93093748 - L1P5 LINE L1 -466 5688 5567 257 203 72 0 chr4 109234643 109234712 -93093635 + L1MC5 LINE L1 7696 7769 -192 788 30 10 0 chr4 109235522 109235621 -93092726 + (TTTC)n Simple_repeat Simple_repeat 4 103 0 249 242 48 0 chr4 109236494 109236556 -93091791 + MIR SINE MIR 125 189 -73 213 376 165 16 chr4 109236601 109236923 -93091424 + L2 LINE L2 2273 2642 -672 566 302 69 43 chr4 109237168 109237750 -93090597 - L1M4 LINE L1 -2201 3945 3349 2250 114 0 0 chr4 109238104 109238410 -93089937 - AluY SINE Alu -5 306 1 192 248 55 103 chr4 109239078 109239223 -93089124 + L2 LINE L2 3100 3237 -76 205 286 26 0 chr4 109239491 109239568 -93088779 - MIR3 SINE MIR -16 192 114 2122 108 0 10 chr4 109240413 109240720 -93087627 - AluSx SINE Alu -8 304 1 1376 144 18 126 chr4 109240818 109241159 -93087188 - AluJo SINE Alu -8 304 1 277 185 112 34 chr4 109241793 109241882 -93086465 - L1MC/D LINE L1 -302 5819 5754 2125 107 7 7 chr4 109241892 109242201 -93086146 - AluSx SINE Alu -3 309 1 1375 148 18 124 chr4 109242300 109242639 -93085708 - AluJo SINE Alu -9 303 1 201 289 0 0 chr4 109243220 109243272 -93085075 - MIR SINE MIR -11 251 200 589 256 36 137 chr4 109243301 109243469 -93084878 - L2 LINE L2 -5 3308 3125 405 0 0 0 chr4 109243469 109243514 -93084833 + (CA)n Simple_repeat Simple_repeat 2 46 0 589 256 36 137 chr4 109243514 109243991 -93084356 - L2 LINE L2 -188 3125 2722 536 292 150 11 chr4 109244023 109244290 -93084057 + L2 LINE L2 1390 1693 -1621 1612 264 96 45 chr4 109244291 109245219 -93083128 + L2 LINE L2 2312 3297 -16 2422 70 3 0 chr4 109245547 109245875 -93082472 + L1PB1 LINE L1 5777 6105 -46 205 214 35 48 chr4 109245875 109245921 -93082426 + (TAAA)n Simple_repeat Simple_repeat 2 47 -97 1777 128 3 53 chr4 109245921 109246037 -93082310 + L1PB4 LINE L1 5843 5963 -193 1683 144 61 19 chr4 109246037 109246397 -93081950 - THE1C LTR MaLR 0 375 1 1777 128 3 53 chr4 109246397 109246601 -93081746 + L1PB4 LINE L1 5963 6147 -9 205 214 35 48 chr4 109246601 109246699 -93081648 + (TAAA)n Simple_repeat Simple_repeat 47 144 0 1737 146 31 0 chr4 109247441 109247735 -93080612 - L1PA16 LINE L1 -3 6163 5861 408 318 47 14 chr4 109247901 109248049 -93080298 + MIR3 SINE MIR 46 198 -10 766 96 109 6 chr4 109248073 109248229 -93080118 + L1MA8 LINE L1 6118 6289 -2 352 186 72 10 chr4 109248351 109248448 -93079899 + MLT1J1 LTR MaLR 1 103 -343 220 301 60 60 chr4 109248505 109248804 -93079543 + L2 LINE L2 1320 1618 -1696 617 273 59 70 chr4 109249079 109249155 -93079192 - L1ME LINE L1 -302 5819 5744 2233 123 0 0 chr4 109249155 109249464 -93078883 - AluSx SINE Alu -3 309 1 617 273 59 70 chr4 109249464 109249860 -93078487 - L1ME LINE L1 -377 5744 5352 22 0 0 0 chr4 109250225 109250247 -93078100 + AT_rich Low_complexity Low_complexity 1 22 0 334 304 154 0 chr4 109250609 109250763 -93077584 - MLT1H1 LTR MaLR -292 263 91 359 276 86 26 chr4 109250805 109250957 -93077390 + MLT1H1 LTR MaLR 331 491 -64 2554 231 59 29 chr4 109250969 109252264 -93076083 - L1ME1 LINE L1 -50 6116 4782 234 207 0 0 chr4 109252265 109252324 -93076023 + MLT1H1 LTR MaLR 493 549 -6 831 247 21 30 chr4 109252342 109252577 -93075770 - LTR40a LTR ERVL 0 519 287 184 325 0 0 chr4 109252794 109252834 -93075513 + L2 LINE L2 3137 3176 -96 2028 128 7 20 chr4 109253320 109253625 -93074722 - AluSp SINE Alu -12 301 1 23 33 0 0 chr4 109253680 109253710 -93074637 + AT_rich Low_complexity Low_complexity 1 30 0 466 239 19 63 chr4 109254173 109254378 -93073969 + HAL1 LINE L1 2312 2507 0 287 353 48 16 chr4 109255405 109255592 -93072755 - L3 LINE CR1 -982 595 403 275 244 73 24 chr4 109255595 109255677 -93072670 - L2 LINE L2 -21 3292 3207 441 0 0 0 chr4 109255773 109255822 -93072525 + (CA)n Simple_repeat Simple_repeat 2 50 0 6818 117 18 5 chr4 109256938 109258494 -93069853 + L1MA1 LINE L1 4724 6302 0 1710 328 15 42 chr4 109258647 109259120 -93069227 - MER70B LTR ERVL -118 460 1 696 270 28 69 chr4 109259226 109259800 -93068547 + L1MEd LINE L1 990 1630 -860 15154 211 24 29 chr4 109259926 109266518 -93061829 + L1PA13 LINE L1 1 6563 -1021 1714 188 76 28 chr4 109266535 109266971 -93061376 + LTR2B LTR ERV1 34 490 0 48563 66 22 24 chr4 109266971 109273880 -93054467 + Harlequin LTR ERV1 1 6896 0 1758 178 75 39 chr4 109273901 109274340 -93054007 + LTR2B LTR ERV1 34 488 -2 2517 112 22 1 chr4 109274342 109274859 -93053488 + L1PA13 LINE L1 6556 7080 -519 252 122 0 0 chr4 109274859 109274900 -93053447 + THE1B LTR MaLR 1 41 -323 10000 101 14 3 chr4 109275000 109276474 -93051873 + THE1B-int LTR MaLR 92 1580 0 1999 147 72 20 chr4 109276474 109276820 -93051527 + THE1B LTR MaLR 1 364 0 3189 135 2 8 chr4 109276820 109277347 -93051000 + L1PA13 LINE L1 7076 7599 -2 186 189 0 0 chr4 109278235 109278272 -93050075 + (TG)n Simple_repeat Simple_repeat 2 38 0 267 325 13 13 chr4 109278581 109278658 -93049689 + L2 LINE L2 3192 3268 -4 23 33 0 0 chr4 109278866 109278896 -93049451 + AT_rich Low_complexity Low_complexity 1 30 0 13084 180 30 10 chr4 109280152 109284435 -93043912 - L1PB1 LINE L1 0 6867 2282 2135 106 3 0 chr4 109284435 109284752 -93043595 + AluSx SINE Alu 1 318 0 13084 180 30 10 chr4 109284752 109286434 -93041913 - L1PB1 LINE L1 -4585 2282 635 979 179 15 0 chr4 109286435 109286631 -93041716 - L1PB1 LINE L1 -6663 200 2 397 178 55 0 chr4 109286792 109286865 -93041482 + MER20 DNA MER1_type 143 219 0 27 0 0 0 chr4 109286957 109286984 -93041363 + AT_rich Low_complexity Low_complexity 1 27 0 1412 147 155 12 chr4 109286984 109287235 -93041112 - AluSg1 SINE Alu -20 289 3 23 33 0 0 chr4 109287247 109287277 -93041070 + AT_rich Low_complexity Low_complexity 1 30 0 1719 197 67 94 chr4 109287369 109287903 -93040444 - MLT2B1 LTR ERVL 0 520 1 25767 194 31 22 chr4 109287905 109288040 -93040307 - ERVL-B1 LTR ERVL -9 5755 5623 1937 187 11 6 chr4 109288040 109288403 -93039944 - MLT1A1 LTR MaLR 0 365 1 25767 194 31 22 chr4 109288403 109290890 -93037457 - ERVL-B1 LTR ERVL -141 5623 3158 7293 36 8 0 chr4 109290890 109292382 -93035965 + L1PA4 LINE L1 4710 6208 0 25767 194 31 22 chr4 109292382 109293291 -93035056 - ERVL-B1 LTR ERVL -2606 3158 2258 1846 151 28 3 chr4 109293291 109293576 -93034771 - AluSx SINE Alu -20 292 1 25767 194 31 22 chr4 109293576 109294446 -93033901 - ERVL-B1 LTR ERVL -3506 2258 1397 2403 95 0 0 chr4 109294446 109294750 -93033597 - AluY SINE Alu -7 304 1 25767 194 31 22 chr4 109294750 109295776 -93032571 - ERVL-B1 LTR ERVL -4367 1397 279 415 182 0 0 chr4 109295799 109295876 -93032471 - AluJo SINE Alu -4 308 232 847 193 14 0 chr4 109295878 109296018 -93032329 - AluJo SINE Alu -170 142 1 536 198 272 17 chr4 109296019 109296223 -93032124 - ERVL-B1 LTR ERVL -5421 233 4 253 228 0 0 chr4 109296223 109296274 -93032073 - Ricksha DNA DNA -2340 906 856 2593 60 0 6 chr4 109296421 109296754 -93031593 - L1PA5 LINE L1 0 6154 5824 2612 54 6 0 chr4 109296754 109297087 -93031260 + L1P LINE L1 4704 5038 -1108 * 9072 52 3 0 chr4 109297086 109298247 -93030100 + L1P LINE L1 2007 3171 -2975 21 0 0 0 chr4 109298441 109298462 -93029885 + AT_rich Low_complexity Low_complexity 1 21 0 377 265 10 0 chr4 109298462 109298560 -93029787 + L1MDa LINE L1 15 113 -6427 591 207 9 0 chr4 109298560 109298671 -93029676 + AluJb SINE Alu 179 290 -22 5004 226 79 25 chr4 109298793 109301515 -93026832 + L1MDa LINE L1 1743 4617 -1923 369 225 81 19 chr4 109301545 109301705 -93026642 + L1MB1 LINE L1 5197 5366 -780 1095 214 0 10 chr4 109301740 109301941 -93026406 + Tigger7 DNA MER2_type 66 264 -469 502 188 0 40 chr4 109301943 109302044 -93026303 + Tigger7 DNA MER2_type 2394 2490 -1 3054 166 22 73 chr4 109302080 109302768 -93025579 + L1MB1 LINE L1 5479 6131 -37 2169 117 52 26 chr4 109302769 109303112 -93025235 + THE1B LTR MaLR 1 352 -12 1154 65 7 0 chr4 109303119 109303272 -93025075 + THE1B-int LTR MaLR 1 154 -1426 10705 118 10 0 chr4 109303272 109304788 -93023559 + THE1B-int LTR MaLR 50 1580 0 2160 113 54 25 chr4 109304788 109305142 -93023205 + THE1B LTR MaLR 1 364 0 368 304 18 0 chr4 109305676 109305788 -93022559 + L3 LINE CR1 1318 1431 -146 1981 143 10 7 chr4 109305853 109306160 -93022187 + AluSg SINE Alu 1 308 -2 1664 252 42 59 chr4 109306306 109306767 -93021580 - L2 LINE L2 0 3313 2874 938 158 20 0 chr4 109306767 109306963 -93021384 + L1MA7 LINE L1 6091 6290 -1 1664 252 42 59 chr4 109306963 109307406 -93020941 - L2 LINE L2 -439 2874 2425 667 268 28 75 chr4 109308985 109309239 -93019108 + MIR SINE MIR 2 243 -19 208 326 137 0 chr4 109310097 109310192 -93018155 - L3 LINE CR1 -74 1503 1396 728 226 40 85 chr4 109311272 109311520 -93016827 - L2 LINE L2 -1382 1932 1696 4949 93 22 1 chr4 109311533 109312397 -93015950 + L1PA14 LINE L1 5108 5988 -173 8348 134 19 6 chr4 109312501 109313814 -93014533 - Tigger1 DNA MER2_type -1059 1359 30 21 0 0 0 chr4 109313974 109313995 -93014352 + AT_rich Low_complexity Low_complexity 1 21 0 725 141 0 8 chr4 109314111 109314232 -93014115 - L1PB3 LINE L1 -9 6145 6026 30 45 0 0 chr4 109314321 109314365 -93013982 + AT_rich Low_complexity Low_complexity 1 44 0 494 289 113 39 chr4 109314469 109314753 -93013594 - MLT1L LTR MaLR 0 615 311 205 296 42 14 chr4 109315805 109315876 -93012471 + L2 LINE L2 3161 3233 -39 614 283 14 80 chr4 109316354 109316630 -93011717 - MIR SINE MIR -3 259 2 4091 42 1 2 chr4 109316952 109317824 -93010523 + L1P2 LINE L1 4879 5748 -406 5275 127 18 35 chr4 109318383 109319270 -93009077 - Tigger1 DNA MER2_type 0 2418 1547 2090 275 31 56 chr4 109319407 109320401 -93007946 - L1PA12 LINE L1 -5796 1785 7 225 0 0 0 chr4 109320460 109320485 -93007862 + (A)n Simple_repeat Simple_repeat 1 25 0 1689 295 49 30 chr4 109321589 109322582 -93005765 - L2 LINE L2 0 3313 2307 303 203 14 14 chr4 109324047 109324121 -93004226 - Charlie8 DNA MER1_type -2227 190 117 972 231 24 12 chr4 109324481 109324732 -93003615 - L1MB8 LINE L1 -73 6105 5852 335 256 83 24 chr4 109324723 109324891 -93003456 - L1M4b LINE L1 -6680 179 2 * 27 0 0 0 chr4 109326507 109326534 -93001813 + AT_rich Low_complexity Low_complexity 1 27 0 294 246 15 0 chr4 109327116 109327181 -93001166 - MER5A DNA MER1_type 0 189 124 1884 170 3 0 chr4 109328164 109328475 -92999872 + AluJb SINE Alu 1 312 0 497 296 87 66 chr4 109329329 109329664 -92998683 + LTR67 LTR ERVL 216 557 0 383 289 47 23 chr4 109329817 109329945 -92998402 - L2 LINE L2 -1 3271 3141 778 169 0 0 chr4 109330136 109330266 -92998081 + FLAM_C SINE Alu 13 142 -1 44 80 0 0 chr4 109331328 109331428 -92996919 + AT_rich Low_complexity Low_complexity 1 100 0 196 317 84 7 chr4 109331453 109331595 -92996752 - MIR SINE MIR -46 216 64 423 0 0 0 chr4 109333441 109333488 -92994859 + (T)n Simple_repeat Simple_repeat 1 47 0 39 0 0 0 chr4 109333513 109333552 -92994795 + GC_rich Low_complexity Low_complexity 1 39 0 572 190 9 4 chr4 109333716 109333846 -92994501 - L1MB8 LINE L1 -583 5588 5461 344 227 0 15 chr4 109333846 109333912 -92994435 + AluS SINE Alu 2 66 -237 2167 116 10 3 chr4 109334138 109334439 -92993908 - AluSq SINE Alu -10 303 1 208 27 54 27 chr4 109334445 109334482 -92993865 + (TTTAA)n Simple_repeat Simple_repeat 3 40 0 5370 90 8 0 chr4 109334482 109335206 -92993141 - L1PA10 LINE L1 -19 6149 5420 487 164 0 0 chr4 109335206 109335279 -92993068 + AluJb SINE Alu 209 281 -31 1692 203 29 29 chr4 109335280 109335786 -92992561 - L1M4 LINE L1 -3853 2117 1606 1170 174 5 5 chr4 109335788 109335983 -92992364 - MLT1A1 LTR MaLR 0 365 171 335 288 194 0 chr4 109335985 109336088 -92992259 + MLT2B2 LTR ERVL 339 421 -133 234 0 0 0 chr4 109336088 109336114 -92992233 + (CAAT)n Simple_repeat Simple_repeat 4 29 0 335 288 194 0 chr4 109336114 109336149 -92992198 + MLT2B2 LTR ERVL 421 554 0 2689 244 33 25 chr4 109336164 109337187 -92991160 - L1M4 LINE L1 -4470 1502 499 1211 228 13 78 chr4 109337209 109337595 -92990752 - MLT1A2 LTR MaLR -13 361 1 540 238 0 112 chr4 109337595 109337818 -92990529 - L1M3d LINE L1 -5018 873 676 183 162 0 0 chr4 109338162 109338199 -92990148 + CT-rich Low_complexity Low_complexity 2 38 0 555 306 144 36 chr4 109338459 109338792 -92989555 - L1M4 LINE L1 -5514 377 9 352 284 24 31 chr4 109338811 109338938 -92989409 - MLT1J LTR MaLR -295 216 91 9318 147 11 4 chr4 109339367 109339722 -92988625 - L1PA13 LINE L1 -19 6144 5793 2401 93 0 6 chr4 109339722 109340034 -92988313 - AluY SINE Alu -1 310 1 9318 147 11 4 chr4 109340034 109342027 -92986320 - L1PA13 LINE L1 -370 5793 3764 636 345 183 20 chr4 109342232 109342545 -92985802 - L3 LINE CR1 -818 759 498 2204 122 0 0 chr4 109342545 109342840 -92985507 + AluSx SINE Alu 1 295 -17 636 345 183 20 chr4 109342840 109343138 -92985209 - L3 LINE CR1 -1079 498 48 190 114 23 23 chr4 109343202 109343246 -92985101 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 2293 105 0 3 chr4 109344343 109344647 -92983700 + AluSc SINE Alu 1 303 -6 390 156 31 0 chr4 109345177 109345241 -92983106 + MLT1B LTR MaLR 1 66 -324 437 266 8 23 chr4 109345394 109345522 -92982825 - LTR16B LTR ERVL 0 464 339 3995 222 24 13 chr4 109345531 109346617 -92981730 - L1PA12 LINE L1 -2685 4899 3802 * 5893 212 59 16 chr4 109346611 109348167 -92980180 - L1PA12 LINE L1 -4285 3299 1670 1242 261 48 73 chr4 109348346 109348974 -92979373 - LTR9 LTR ERV1 0 612 1 223 338 26 13 chr4 109349974 109350051 -92978296 + MER5A DNA MER1_type 3 80 -109 461 308 157 20 chr4 109350392 109350590 -92977757 + MIR SINE MIR 38 262 0 5486 106 15 0 chr4 109351507 109352307 -92976040 - L1PA13 LINE L1 0 6163 5352 4101 273 68 25 chr4 109352775 109354487 -92973860 + L1ME1 LINE L1 37 1822 -4574 1485 244 51 89 chr4 109354486 109355158 -92973189 + L1ME1 LINE L1 5580 6225 -10 * 24 0 0 0 chr4 109355165 109355189 -92973158 + AT_rich Low_complexity Low_complexity 1 24 0 1444 153 27 147 chr4 109355569 109355758 -92972589 - MLT1B LTR MaLR 0 390 282 1940 141 3 7 chr4 109355758 109356220 -92972127 - AluSx SINE Alu 0 470 10 1444 153 27 147 chr4 109356220 109356472 -92971875 - MLT1B LTR MaLR -108 282 1 554 138 9 0 chr4 109356519 109356628 -92971719 + CT-rich Low_complexity Low_complexity 3 112 0 1714 271 70 145 chr4 109356660 109357706 -92970641 - L2 LINE L2 -33 3280 2285 236 309 88 17 chr4 109357706 109357887 -92970460 - LTR33A LTR ERVL -5 518 325 1714 271 70 145 chr4 109357887 109358804 -92969543 - L2 LINE L2 -1028 2285 1301 1535 239 81 55 chr4 109358836 109359492 -92968855 + MER97b DNA MER1_type? 13 685 -368 384 223 21 21 chr4 109359506 109359600 -92968747 + MER97c DNA MER1_type? 997 1090 0 477 215 32 0 chr4 109360154 109360247 -92968100 + MLT1A1 LTR MaLR 1 96 -269 3311 176 11 9 chr4 109361505 109362149 -92966198 + L1 LINE L1 4664 5308 -838 656 203 132 26 chr4 109362160 109362387 -92965960 + L1MC4a LINE L1 6162 6412 -1396 188 259 35 52 chr4 109363045 109363103 -92965244 - MER5B DNA MER1_type -4 174 118 1122 299 132 18 chr4 109363117 109363608 -92964739 - MLT1H1 LTR MaLR -8 547 1 510 229 46 9 chr4 109363609 109363718 -92964629 + MER5B DNA MER1_type 66 178 0 275 354 50 0 chr4 109364352 109364451 -92963896 - L2 LINE L2 -186 3086 2983 1290 279 77 20 chr4 109364452 109364896 -92963451 - MLT1J LTR MaLR -31 480 12 280 317 135 23 chr4 109365628 109365975 -92962372 - L1ME4a LINE L1 -82 6039 5654 401 335 93 42 chr4 109366013 109366249 -92962098 - L1ME4a LINE L1 -2244 5564 5317 4131 147 14 63 chr4 109366369 109366835 -92961512 - L1MA6 LINE L1 -92 6208 5800 293 0 27 0 chr4 109366835 109366872 -92961475 + (CA)n Simple_repeat Simple_repeat 1 38 0 4131 147 14 63 chr4 109366872 109367242 -92961105 - L1MA6 LINE L1 -500 5800 5413 2359 162 16 2 chr4 109367539 109367965 -92960382 + L1MA9 LINE L1 5856 6287 -25 645 242 114 5 chr4 109368492 109368711 -92959636 - LTR16A1 LTR ERVL -1 456 214 285 336 137 16 chr4 109368862 109369118 -92959229 + L2 LINE L2 3014 3300 -13 288 256 51 0 chr4 109369495 109369573 -92958774 - MLT1H LTR MaLR 0 549 468 250 328 50 34 chr4 109369806 109369925 -92958422 - L2 LINE L2 -203 3069 2949 646 281 50 15 chr4 109369932 109370131 -92958216 - MLT1J LTR MaLR -4 507 302 2196 164 61 15 chr4 109370224 109370633 -92957714 + MSTA LTR MaLR 1 428 0 434 329 84 27 chr4 109370926 109371151 -92957196 + L2 LINE L2 3074 3311 -2 33 25 0 0 chr4 109371651 109371691 -92956656 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr4 109371871 109371899 -92956448 + AT_rich Low_complexity Low_complexity 1 28 0 4329 154 38 1 chr4 109372167 109372957 -92955390 - L1MA4 LINE L1 -5 6295 5477 744 140 44 0 chr4 109372962 109373098 -92955249 - L1MA3 LINE L1 -1 6304 6163 854 128 20 149 chr4 109373098 109373459 -92954888 - L1MA4 LINE L1 -798 5348 5178 340 301 0 67 chr4 109373707 109373916 -92954431 - L1ME3A LINE L1 -7 6163 5969 572 271 44 8 chr4 109374399 109374744 -92953603 + L1ME LINE L1 679 1033 -5047 649 186 116 35 chr4 109374796 109375005 -92953342 + MLT1G1 LTR MaLR 244 549 -46 1937 288 61 21 chr4 109375008 109376450 -92951897 + L1ME LINE L1 1120 2598 -3482 1617 191 93 11 chr4 109376450 109376816 -92951531 - MSTD LTR MaLR 0 396 1 1937 288 61 21 chr4 109376816 109376902 -92951445 + L1ME LINE L1 2598 2679 -3401 976 193 42 0 chr4 109376902 109377094 -92951253 + MLT1D LTR MaLR 299 498 -7 1167 210 44 33 chr4 109377750 109378022 -92950325 - MLT1A1 LTR MaLR 0 365 91 523 234 32 13 chr4 109378171 109378329 -92950018 - L1MB8 LINE L1 0 6178 6018 1362 181 31 100 chr4 109378333 109378752 -92949595 - L1M4 LINE L1 -1267 4879 4490 1821 155 163 19 chr4 109378911 109379279 -92949068 + MSTA LTR MaLR 6 426 -2 8946 180 25 3 chr4 109379281 109380896 -92947451 + MSTA-int LTR MaLR 1 1651 0 1899 104 197 25 chr4 109380896 109381261 -92947086 + MSTA LTR MaLR 1 428 0 682 226 10 108 chr4 109381483 109381797 -92946550 - TAR1 Satellite telomeric -1819 292 10 * 1211 211 64 32 chr4 109381611 109381953 -92946394 - LTR60 LTR ERV1 -6 580 228 1245 138 0 119 chr4 109381956 109382268 -92946079 - LTR60 LTR ERV1 -311 275 1 40 21 0 0 chr4 109382694 109382741 -92945606 + AT_rich Low_complexity Low_complexity 1 47 0 23 33 0 0 chr4 109382886 109382916 -92945431 + AT_rich Low_complexity Low_complexity 1 30 0 669 43 0 0 chr4 109382969 109383061 -92945286 - AluY SINE Alu 0 312 221 1199 57 0 13 chr4 109383755 109383914 -92944433 - L1PA8 LINE L1 0 6172 6016 735 185 45 13 chr4 109384150 109384307 -92944040 - L1M3e LINE L1 -6868 162 1 817 196 0 0 chr4 109384401 109384549 -92943798 + FRAM SINE Alu 26 173 -3 2880 171 95 6 chr4 109384714 109385259 -92943088 - LTR26E LTR ERV1 -27 595 2 277 195 104 26 chr4 109385518 109385595 -92942752 - HsTC2 DNA Tc2 -1 1897 1815 2167 177 13 98 chr4 109385616 109385654 -92942693 - MLT2B3 LTR ERVL -2 552 512 186 43 0 0 chr4 109385654 109385677 -92942670 + (TAGA)n Simple_repeat Simple_repeat 2 24 0 2167 177 13 98 chr4 109385677 109386170 -92942177 - MLT2B3 LTR ERVL -42 512 66 240 228 165 0 chr4 109386798 109386877 -92941470 - L2 LINE L2 -2 3311 3220 1487 272 74 38 chr4 109386909 109387350 -92940997 - L2 LINE L2 -287 3026 2552 4848 110 45 11 chr4 109387350 109388103 -92940244 + MER4E LTR ERV1 1 779 0 1487 272 74 38 chr4 109388103 109388321 -92940026 - L2 LINE L2 -761 2552 2343 2014 138 28 64 chr4 109388321 109388431 -92939916 + MLT2A2 LTR ERVL 1 113 -441 2260 118 0 0 chr4 109388431 109388744 -92939603 + AluSq SINE Alu 1 313 0 2014 138 28 64 chr4 109388744 109389192 -92939155 + MLT2A2 LTR ERVL 113 552 -2 22 0 0 0 chr4 109389852 109389874 -92938473 + AT_rich Low_complexity Low_complexity 1 22 0 2349 73 0 3 chr4 109390361 109390663 -92937684 - AluY SINE Alu -10 301 1 997 230 34 0 chr4 109390663 109390872 -92937475 - MER58A DNA MER1_type -8 216 1 186 318 45 0 chr4 109391093 109391159 -92937188 - L2 LINE L2 -1 3271 3203 686 169 8 0 chr4 109391329 109391447 -92936900 - L1PA16 LINE L1 -9 6157 6039 668 111 8 8 chr4 109391453 109391570 -92936777 + L1PB4 LINE L1 5284 5400 -766 3767 128 37 2 chr4 109391863 109392487 -92935860 + L1PB4 LINE L1 5389 6034 -122 * 14248 158 34 46 chr4 109392484 109394286 -92934061 + L1M1 LINE L1 1102 2925 -4640 2027 129 0 4 chr4 109394286 109394565 -92933782 + AluSx SINE Alu 3 280 -32 14248 158 34 46 chr4 109394565 109397444 -92930903 + L1M1 LINE L1 2925 5726 -1839 1679 141 34 4 chr4 109397444 109397524 -92930823 + AluSc SINE Alu 39 115 -194 297 0 0 0 chr4 109397524 109397557 -92930790 + (CA)n Simple_repeat Simple_repeat 2 34 0 1679 141 34 4 chr4 109397557 109397739 -92930608 + AluSc SINE Alu 115 309 0 14248 158 34 46 chr4 109397739 109397805 -92930542 + L1M1 LINE L1 5726 5791 -1774 34197 94 7 51 chr4 109397805 109404262 -92924085 + L1PA5 LINE L1 1 6479 0 38 0 0 0 chr4 109404284 109404322 -92924025 + AT_rich Low_complexity Low_complexity 1 38 0 3465 159 84 54 chr4 109404555 109404762 -92923585 - L1MD2 LINE L1 -13 6346 6147 207 100 0 0 chr4 109404762 109404792 -92923555 + (TG)n Simple_repeat Simple_repeat 1 30 0 3465 159 84 54 chr4 109404792 109405001 -92923346 - L1MD2 LINE L1 -212 6147 5946 2157 105 0 3 chr4 109405001 109405295 -92923052 - AluSg SINE Alu -14 296 4 3465 159 84 54 chr4 109405295 109405694 -92922653 - L1MD2 LINE L1 -413 5946 5505 534 192 8 8 chr4 109405813 109405933 -92922414 - L1MA8 LINE L1 -3 6288 6169 267 257 14 0 chr4 109406097 109406167 -92922180 + (TAG)n Simple_repeat Simple_repeat 1 71 0 229 303 42 17 chr4 109406370 109406489 -92921858 - L1M4 LINE L1 -3617 2529 2408 254 184 0 0 chr4 109406760 109406809 -92921538 - MER4-int LTR ERV1 -5439 1159 1111 3203 126 19 6 chr4 109407596 109408114 -92920233 - L1PA13 LINE L1 -2 6161 5637 797 158 0 0 chr4 109408114 109408241 -92920106 - THE1B LTR MaLR -1 363 237 12994 95 6 64 chr4 109408241 109410403 -92917944 + L1P LINE L1 2491 4526 -1620 263 317 114 0 chr4 109410635 109410758 -92917589 + MIR SINE MIR 122 258 -4 2832 129 143 12 chr4 109411243 109411739 -92916608 - LTR59 LTR ERV1 -7 590 30 718 108 58 0 chr4 109411739 109411859 -92916488 - MLT2B2 LTR ERVL -388 127 1 476 251 5 103 chr4 109412156 109412351 -92915996 - L2 LINE L2 -6 3307 3132 185 425 85 0 chr4 109412736 109412842 -92915505 + L2 LINE L2 3118 3232 -40 844 255 102 62 chr4 109413056 109413507 -92914840 + MLT1H LTR MaLR 1 540 -9 294 216 40 56 chr4 109414307 109414432 -92913915 - L1ME3A LINE L1 -297 5873 5751 401 0 20 0 chr4 109414481 109414530 -92913817 + (TATAA)n Simple_repeat Simple_repeat 4 53 0 916 190 0 6 chr4 109415226 109415618 -92912729 - ALR/Alpha Satellite centromeric 0 389 1 6060 32 0 3 chr4 109415618 109416362 -92911985 + L1P LINE L1 2130 2871 -3275 3901 26 2 0 chr4 109416468 109416930 -92911417 - L1P LINE L1 -1793 4353 3891 * 4350 131 3 1 chr4 109416929 109417578 -92910769 + L1P LINE L1 7 656 -5490 8642 121 10 19 chr4 109417678 109419024 -92909323 - L1P3 LINE L1 -4994 1467 134 507 131 12 0 chr4 109420261 109420345 -92908002 + AluS SINE Alu 1 85 -228 321 329 93 14 chr4 109420949 109421089 -92907258 - L2 LINE L2 -1 3312 3162 1222 156 6 0 chr4 109421805 109421984 -92906363 - AluSx SINE Alu -132 180 1 36 77 0 0 chr4 109422024 109422102 -92906245 + AT_rich Low_complexity Low_complexity 1 78 0 6326 75 1 0 chr4 109422500 109423317 -92905030 - L1PA10 LINE L1 0 6168 5351 1412 197 78 44 chr4 109423327 109423688 -92904659 - MLT1B LTR MaLR -17 373 1 7576 124 36 38 chr4 109423955 109425287 -92903060 - pTR5 LTR ERV1 -366 2072 743 1187 209 37 0 chr4 109425302 109425546 -92902801 - L1M1 LINE L1 -7300 265 13 1081 123 5 50 chr4 109425547 109425766 -92902581 - L1P4 LINE L1 -682 5484 5276 1024 280 6 3 chr4 109425761 109426107 -92902240 + L1 LINE L1 2765 3111 -3035 * 206 176 20 0 chr4 109426258 109426309 -92902038 + CT-rich Low_complexity Low_complexity 2 53 0 1509 186 19 19 chr4 109426770 109427088 -92901259 - L1MA6 LINE L1 -4 6296 5979 238 164 68 0 chr4 109427860 109427933 -92900414 + (TAGA)n Simple_repeat Simple_repeat 2 79 0 2353 36 7 0 chr4 109428172 109428481 -92899866 - AluY SINE Alu 0 313 3 262 288 195 0 chr4 109428590 109428708 -92899639 - MIR SINE MIR -5 257 117 922 277 6 15 chr4 109430419 109430755 -92897592 + L1M4 LINE L1 2299 2631 -3515 305 325 47 57 chr4 109431041 109431253 -92897094 + L1 LINE L1 286 1872 -5296 2209 219 45 42 chr4 109431260 109431825 -92896522 + L1 LINE L1 3901 4470 -2697 1954 99 72 10 chr4 109431825 109432117 -92896230 + AluSx SINE Alu 3 312 0 2209 219 45 42 chr4 109432117 109432309 -92896038 + L1 LINE L1 4470 4660 -2507 * 2992 191 13 5 chr4 109432308 109432909 -92895438 - L1P LINE L1 -2099 4047 3442 1565 243 47 20 chr4 109432914 109433462 -92894885 - L1M4c LINE L1 -4805 1841 1279 1960 150 58 0 chr4 109433497 109433844 -92894503 - THE1C LTR MaLR 0 375 9 2170 220 108 19 chr4 109433851 109434113 -92894234 - L1M4c LINE L1 -5273 1269 1031 2046 131 3 26 chr4 109434113 109434418 -92893929 - AluSx SINE Alu -14 298 1 2170 220 108 19 chr4 109434418 109434769 -92893578 - L1M4c LINE L1 -5511 1031 602 301 307 11 0 chr4 109434781 109434869 -92893478 + L1MC4 LINE L1 6615 6703 -1339 43 20 0 0 chr4 109434869 109434919 -92893428 + AT_rich Low_complexity Low_complexity 1 50 0 709 297 124 42 chr4 109434927 109435452 -92892895 - L1M4c LINE L1 -5967 575 8 29 0 0 0 chr4 109435735 109435764 -92892583 + AT_rich Low_complexity Low_complexity 1 29 0 603 95 0 0 chr4 109436079 109436163 -92892184 + L1PA5 LINE L1 6063 6146 -8 4990 179 27 0 chr4 109436309 109437241 -92891106 - L1MC1 LINE L1 -5 6328 5372 317 248 234 0 chr4 109437989 109438130 -92890217 - L2 LINE L2 -37 3276 3103 235 79 53 0 chr4 109439509 109439547 -92888800 + L1MB7 LINE L1 6145 6184 0 447 260 81 81 chr4 109439602 109439794 -92888553 + L1MC5 LINE L1 7499 7690 -271 1885 135 29 0 chr4 109439794 109440103 -92888244 - AluSx SINE Alu 0 317 1 447 260 81 81 chr4 109440103 109440327 -92888020 + L1MC5 LINE L1 7689 7917 -44 5635 126 14 10 chr4 109440383 109441288 -92887059 + L1MA2 LINE L1 5386 6294 -10 21 0 0 0 chr4 109441526 109441547 -92886800 + AT_rich Low_complexity Low_complexity 1 21 0 584 294 104 52 chr4 109441969 109442011 -92886336 + L2 LINE L2 2448 2486 -828 1680 207 34 3 chr4 109442011 109442363 -92885984 - MLT1A1 LTR MaLR 0 365 3 584 294 104 52 chr4 109442363 109442667 -92885680 + L2 LINE L2 2486 2812 -502 227 291 114 13 chr4 109442676 109442755 -92885592 + L2 LINE L2 2979 3065 -248 201 244 174 23 chr4 109442794 109442880 -92885467 + L2 LINE L2 3165 3263 -50 367 71 125 0 chr4 109442882 109442938 -92885409 - MADE1 DNA Mariner -15 65 3 24 0 0 0 chr4 109443009 109443033 -92885314 + AT_rich Low_complexity Low_complexity 1 24 0 31 58 0 0 chr4 109443084 109443136 -92885211 + AT_rich Low_complexity Low_complexity 1 52 0 237 236 0 0 chr4 109444316 109444371 -92883976 - L1ME4a LINE L1 -83 6038 5984 221 125 62 16 chr4 109444421 109444485 -92883862 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 1100 233 104 61 chr4 109444502 109444945 -92883402 + MLT1C LTR MaLR 6 467 0 22 35 0 0 chr4 109445613 109445642 -92882705 + AT_rich Low_complexity Low_complexity 1 29 0 1182 184 130 54 chr4 109445773 109445918 -92882429 + MER2 DNA MER2_type 7 140 -205 1534 195 3 24 chr4 109445918 109446216 -92882131 + AluJo SINE Alu 1 292 -20 1182 184 130 54 chr4 109446216 109446385 -92881962 + MER2 DNA MER2_type 140 345 0 316 53 0 35 chr4 109446387 109446444 -92881903 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 2137 108 0 0 chr4 109446703 109446981 -92881366 + AluSg SINE Alu 1 278 -32 180 97 0 0 chr4 109446981 109447012 -92881335 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1318 84 5 5 chr4 109447245 109447259 -92881088 + L1PA10 LINE L1 5715 5728 -440 1682 79 31 0 chr4 109447259 109447488 -92880859 - L1PA10 LINE L1 0 6168 5933 1318 84 5 5 chr4 109447488 109447664 -92880683 + L1PA10 LINE L1 5727 5905 -263 700 268 84 41 chr4 109448650 109449162 -92879185 + L1M4 LINE L1 2298 2831 -3315 1980 248 119 46 chr4 109449175 109449844 -92878503 + L1MEc LINE L1 34 653 -5743 333 0 0 0 chr4 109449844 109449881 -92878466 + (CA)n Simple_repeat Simple_repeat 2 38 0 1980 248 119 46 chr4 109449881 109449943 -92878404 + L1MEc LINE L1 653 709 -5687 2162 97 23 0 chr4 109449943 109450243 -92878104 + AluSp SINE Alu 1 307 -6 1980 248 119 46 chr4 109450243 109450376 -92877971 + L1MEc LINE L1 709 962 -5434 2015 113 3 29 chr4 109450915 109451224 -92877123 + AluSq SINE Alu 1 301 -12 358 296 53 41 chr4 109451226 109451375 -92876972 + L1M4 LINE L1 4420 4573 -1573 1105 199 20 123 chr4 109451375 109451781 -92876566 - MLT1A1 LTR MaLR 0 365 2 358 296 53 41 chr4 109451781 109451800 -92876547 + L1M4 LINE L1 4573 4590 -1556 258 259 144 14 chr4 109451898 109452037 -92876310 + L1ME LINE L1 4799 4955 -1191 860 275 62 24 chr4 109452317 109452782 -92875565 + L1ME LINE L1 5321 5803 -359 420 325 126 18 chr4 109452863 109453205 -92875142 + L1M4 LINE L1 4640 5018 -1128 21 0 0 0 chr4 109453874 109453895 -92874452 + AT_rich Low_complexity Low_complexity 1 21 0 417 305 71 101 chr4 109454085 109454561 -92873786 + L1ME LINE L1 29 490 -5580 724 262 28 73 chr4 109454578 109454864 -92873483 - LTR68 LTR ERV1 -467 273 1 26 30 0 0 chr4 109454977 109455010 -92873337 + AT_rich Low_complexity Low_complexity 1 33 0 2081 87 3 29 chr4 109455554 109455866 -92872481 + AluY SINE Alu 1 304 -7 22 70 0 0 chr4 109455930 109455973 -92872374 + AT_rich Low_complexity Low_complexity 1 43 0 2114 119 0 0 chr4 109458027 109458321 -92870026 - AluSc SINE Alu -15 294 1 21 36 0 0 chr4 109458522 109458550 -92869797 + AT_rich Low_complexity Low_complexity 1 28 0 11297 220 89 16 chr4 109458814 109459427 -92868920 - L1PB3 LINE L1 -1 6869 6302 2272 121 22 25 chr4 109459427 109459792 -92868555 + THE1B LTR MaLR 1 364 0 11297 220 89 16 chr4 109459792 109461716 -92866631 - L1PB3 LINE L1 -568 6302 4520 2460 48 0 3 chr4 109461716 109462010 -92866337 - AluY SINE Alu -18 293 1 11297 220 89 16 chr4 109462010 109464302 -92864045 - L1PB3 LINE L1 -2350 4520 1679 6124 193 10 14 chr4 109464306 109465761 -92862586 - L1PB3 LINE L1 -5146 1717 660 832 282 8 0 chr4 109465834 109466096 -92862251 - L1PBa LINE L1 -5685 1178 915 2358 183 47 6 chr4 109466100 109466586 -92861761 - L1P LINE L1 -796 5350 4845 1709 210 12 0 chr4 109466586 109466929 -92861418 + L1P LINE L1 4518 4864 -1282 28 29 0 0 chr4 109467137 109467172 -92861175 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 109468540 109468563 -92859784 + AT_rich Low_complexity Low_complexity 1 23 0 384 22 0 0 chr4 109468581 109468626 -92859721 + (TG)n Simple_repeat Simple_repeat 2 46 0 31 0 0 0 chr4 109469440 109469471 -92858876 + AT_rich Low_complexity Low_complexity 1 31 0 1802 168 0 7 chr4 109469476 109469762 -92858585 - AluJo SINE Alu -24 288 5 279 0 0 0 chr4 109469825 109469856 -92858491 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1928 127 18 0 chr4 109469858 109470134 -92858213 - AluSx SINE Alu -31 281 1 6551 27 1 0 chr4 109471543 109472323 -92856024 - L1PA4 LINE L1 -1 6154 5374 259 368 74 21 chr4 109472326 109472568 -92855779 - MIR SINE MIR -5 257 3 344 229 37 9 chr4 109472646 109472755 -92855592 - L1M4 LINE L1 -2136 4010 3899 233 109 22 0 chr4 109472763 109472809 -92855538 + LTR66 LTR ERVL 398 444 -166 586 274 8 66 chr4 109472813 109473054 -92855293 - L1M4 LINE L1 -2274 3872 3646 2120 56 45 0 chr4 109473255 109473523 -92854824 - AluY SINE Alu -11 300 21 606 116 411 0 chr4 109473605 109473751 -92854596 - THE1C LTR MaLR -169 206 1 375 41 0 0 chr4 109473818 109473867 -92854480 + (TG)n Simple_repeat Simple_repeat 2 50 0 1051 245 98 39 chr4 109474435 109474823 -92853524 + L1MA4 LINE L1 5855 6265 -35 665 188 0 39 chr4 109474823 109474977 -92853370 + L1PB4 LINE L1 6000 6147 -9 977 168 66 10 chr4 109476194 109476390 -92851957 - L1MC1 LINE L1 -5 6328 6122 1151 163 29 12 chr4 109476932 109477177 -92851170 + L1MA4 LINE L1 6040 6288 -12 253 272 26 44 chr4 109477187 109477301 -92851046 + Zaphod DNA AcHobo 364 475 -3556 207 156 0 0 chr4 109478107 109478139 -92850208 + (CA)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr4 109478646 109478669 -92849678 + AT_rich Low_complexity Low_complexity 1 23 0 3663 105 4 6 chr4 109478688 109479222 -92849125 - L1MA2 LINE L1 -401 5904 5372 2115 127 39 23 chr4 109479222 109479593 -92848754 + L1MA2 LINE L1 5914 6304 0 27 62 0 0 chr4 109479622 109479670 -92848677 + AT_rich Low_complexity Low_complexity 1 48 0 270 191 0 0 chr4 109480351 109480398 -92847949 - MLT2D LTR ERVL 0 414 368 279 114 0 0 chr4 109481045 109481089 -92847258 + (CA)n Simple_repeat Simple_repeat 2 45 0 238 259 96 82 chr4 109481273 109481408 -92846939 - MIR SINE MIR -44 218 82 1898 161 3 0 chr4 109481559 109481858 -92846489 + AluSx SINE Alu 1 300 -12 236 365 26 77 chr4 109481992 109482148 -92846199 + L2 LINE L2 3072 3219 -53 23 54 0 0 chr4 109482323 109482360 -92845987 + AT_rich Low_complexity Low_complexity 1 37 0 6876 67 16 2 chr4 109482626 109483980 -92844367 - L1PA7 LINE L1 0 6154 4789 182 343 101 24 chr4 109484080 109484328 -92844019 - L2 LINE L2 -410 2904 2638 2262 143 38 12 chr4 109485404 109485830 -92842517 + L1MA3 LINE L1 5857 6293 -12 853 277 86 14 chr4 109485860 109485982 -92842365 + L1M4c LINE L1 2381 2493 -3889 1620 124 20 24 chr4 109485982 109486280 -92842067 + L1MA4 LINE L1 6000 6296 -4 853 277 86 14 chr4 109486280 109486724 -92841623 + L1M4c LINE L1 2493 2992 -3390 588 247 18 12 chr4 109486810 109486976 -92841371 + MER3 DNA MER1_type 10 129 -80 1606 199 49 30 chr4 109486977 109487343 -92841004 + MLT1B LTR MaLR 8 380 -10 714 178 16 0 chr4 109487889 109488018 -92840329 + L1PA16 LINE L1 6030 6160 -6 2276 95 3 0 chr4 109488250 109488544 -92839803 - AluSc SINE Alu -14 295 1 264 265 60 24 chr4 109489826 109489909 -92838438 + L2 LINE L2 2115 2200 -1114 396 70 14 28 chr4 109489958 109490029 -92838318 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 1143 156 4 66 chr4 109490104 109490347 -92838000 + L1PA16 LINE L1 5923 6150 -16 296 357 14 34 chr4 109490515 109490797 -92837550 + L2 LINE L2 2741 3081 -232 182 37 37 0 chr4 109490844 109490871 -92837476 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 31 0 0 0 chr4 109491109 109491140 -92837207 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr4 109491686 109491717 -92836630 + AT_rich Low_complexity Low_complexity 1 31 0 209 220 17 0 chr4 109491789 109491848 -92836499 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 * 216 273 0 0 chr4 109491815 109491881 -92836466 + (TA)n Simple_repeat Simple_repeat 1 66 0 5417 167 35 8 chr4 109493605 109494326 -92834021 + L1PA13 LINE L1 1 755 -6826 189 0 0 0 chr4 109494326 109494347 -92834000 + (CACAG)n Simple_repeat Simple_repeat 1 21 0 5417 167 35 8 chr4 109494347 109494554 -92833793 + L1PA13 LINE L1 755 955 -6626 16014 171 9 2 chr4 109494554 109498421 -92829926 + L1PA13 LINE L1 3703 7601 0 1429 244 44 37 chr4 109498431 109499001 -92829346 + L1M4 LINE L1 4152 4725 -1421 * 1632 147 7 11 chr4 109498991 109499033 -92829314 + L1M2 LINE L1 5452 5493 -819 1956 171 94 5 chr4 109499033 109499426 -92828921 + MSTA LTR MaLR 1 428 0 1632 147 7 11 chr4 109499426 109499668 -92828679 + L1M2 LINE L1 5493 5735 -577 25 0 0 0 chr4 109499865 109499890 -92828457 + AT_rich Low_complexity Low_complexity 1 25 0 276 213 80 0 chr4 109500223 109500298 -92828049 - L1ME LINE L1 -349 5821 5741 2164 144 84 22 chr4 109500728 109501131 -92827216 - MSTA LTR MaLR 0 428 1 3405 121 24 65 chr4 109501135 109501287 -92827060 - MER4B LTR ERV1 -7 603 446 1621 182 0 0 chr4 109501287 109501545 -92826802 - AluJb SINE Alu -54 258 1 3405 121 24 65 chr4 109501545 109502020 -92826327 - MER4B LTR ERV1 -164 446 2 34 42 0 0 chr4 109502852 109502900 -92825447 + AT_rich Low_complexity Low_complexity 1 48 0 288 0 0 0 chr4 109502911 109502943 -92825404 + (CA)n Simple_repeat Simple_repeat 1 32 0 207 69 0 0 chr4 109502952 109502981 -92825366 + (GA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr4 109504167 109504188 -92824159 + AT_rich Low_complexity Low_complexity 1 21 0 29 70 0 0 chr4 109504501 109504558 -92823789 + AT_rich Low_complexity Low_complexity 1 57 0 26 64 0 0 chr4 109505105 109505152 -92823195 + AT_rich Low_complexity Low_complexity 1 47 0 498 146 0 0 chr4 109505294 109505390 -92822957 + (CA)n Simple_repeat Simple_repeat 1 96 0 412 292 40 40 chr4 109505619 109505821 -92822526 - HERVL LTR ERVL -1338 4316 4115 776 98 8 0 chr4 109505973 109506096 -92822251 + L1MA4 LINE L1 6166 6289 -11 466 361 62 30 chr4 109506879 109507317 -92821030 - HERVL LTR ERVL -2137 3627 3176 399 340 107 27 chr4 109508226 109508526 -92819821 - L2 LINE L2 -797 2517 2194 22 70 0 0 chr4 109508972 109509015 -92819332 + AT_rich Low_complexity Low_complexity 1 43 0 38 51 0 0 chr4 109509131 109509190 -92819157 + AT_rich Low_complexity Low_complexity 1 59 0 49 0 0 0 chr4 109509833 109509882 -92818465 + AT_rich Low_complexity Low_complexity 1 49 0 195 100 0 0 chr4 109509927 109509957 -92818390 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 350 41 0 20 chr4 109510007 109510056 -92818291 + (TTTTA)n Simple_repeat Simple_repeat 1 48 0 9893 96 13 2 chr4 109510056 109512225 -92816122 - L1PA8 LINE L1 -24 6148 3958 4254 54 13 67 chr4 109512230 109512752 -92815595 - MER11A LTR ERVK -4 1262 713 7896 77 5 18 chr4 109512752 109513837 -92814510 + MER11C LTR ERVK 1 1071 0 4254 54 13 67 chr4 109513837 109514409 -92813938 - MER11A LTR ERVK -553 713 1 10161 120 7 1 chr4 109514409 109516029 -92812318 - L1PA8 LINE L1 -2183 3963 2334 821 240 236 66 chr4 109517218 109517727 -92810620 + MLT1G LTR MaLR 6 549 -41 240 280 102 70 chr4 109520336 109520493 -92807854 - MER5B DNA MER1_type 0 178 17 2070 116 35 27 chr4 109520730 109521102 -92807245 - THE1C LTR MaLR 0 375 1 270 0 0 0 chr4 109521201 109521231 -92807116 + (TA)n Simple_repeat Simple_repeat 2 31 0 860 313 97 28 chr4 109521376 109521842 -92806505 - MLT1J LTR MaLR -11 500 3 374 333 81 4 chr4 109523351 109523585 -92804762 - MIR SINE MIR -10 252 1 2630 26 3 3 chr4 109524122 109524432 -92803915 - AluY SINE Alu 0 311 2 548 289 47 55 chr4 109524540 109525069 -92803278 + L1MC5 LINE L1 7389 7913 -48 378 42 0 0 chr4 109525089 109525137 -92803210 + (CA)n Simple_repeat Simple_repeat 2 49 0 249 274 53 42 chr4 109525547 109525642 -92802705 - MIR SINE MIR -87 175 80 219 327 30 20 chr4 109526188 109526289 -92802058 + MIR SINE MIR 157 258 -4 2098 124 3 3 chr4 109526852 109527159 -92801188 - AluSx SINE Alu -5 307 1 2736 10 3 0 chr4 109527168 109527473 -92800874 - AluYa5 SINE Alu -5 306 1 6096 103 7 9 chr4 109527955 109529408 -92798939 + L1PA11 LINE L1 4701 6157 -17 2107 130 0 0 chr4 109529443 109529735 -92798612 + AluSc SINE Alu 1 292 -17 655 134 0 0 chr4 109529812 109529909 -92798438 + L1PA4 LINE L1 2 98 -6048 * 38689 40 0 1 chr4 109529907 109535463 -92792884 + L1PA4 LINE L1 623 6173 0 789 300 13 4 chr4 109535492 109535722 -92792625 - MIR SINE MIR -25 237 6 1388 258 84 93 chr4 109536775 109537152 -92791195 - MLT1E LTR MaLR -2 591 219 1345 50 0 39 chr4 109537152 109537334 -92791013 + L1PA3 LINE L1 5981 6155 0 1388 258 84 93 chr4 109537334 109537550 -92790797 - MLT1E LTR MaLR -374 219 3 2159 103 13 0 chr4 109537973 109538273 -92790074 + AluSx SINE Alu 3 306 -6 266 215 63 0 chr4 109539000 109539079 -92789268 + L1MC4 LINE L1 5003 5086 -1060 1507 241 51 13 chr4 109539083 109539874 -92788473 + L1MC4 LINE L1 5147 5735 -449 1144 250 18 14 chr4 109539643 109539923 -92788424 + L1MB8 LINE L1 5781 6061 -117 * 1020 199 99 78 chr4 109539977 109540359 -92787988 + Charlie4a DNA MER1_type 119 508 0 311 189 0 14 chr4 109540675 109540749 -92787598 + (TA)n Simple_repeat Simple_repeat 1 73 0 546 252 20 14 chr4 109542362 109542509 -92785838 - L1M4 LINE L1 -6372 170 23 887 266 140 16 chr4 109542528 109542971 -92785376 - L1M4 LINE L1 -1741 4405 3908 438 300 125 0 chr4 109543007 109543287 -92785060 - L1MEc LINE L1 -3981 2415 2101 248 281 35 18 chr4 109543307 109543421 -92784926 - L1MEc LINE L1 -4376 2020 1905 7888 11 0 0 chr4 109543518 109544909 -92783438 + L1PA2 LINE L1 4765 6155 0 1857 219 7 5 chr4 109545728 109546153 -92782194 - L1P LINE L1 -1266 4880 4455 207 220 0 0 chr4 109546344 109546394 -92781953 + GA-rich Low_complexity Low_complexity 3 52 0 552 265 17 0 chr4 109547238 109547355 -92780992 + MIR SINE MIR 2 120 -142 1544 292 72 23 chr4 109547400 109547548 -92780799 + L1M4b LINE L1 228 367 -6492 189 74 0 0 chr4 109547548 109547575 -92780772 + (CA)n Simple_repeat Simple_repeat 1 27 0 1544 292 72 23 chr4 109547575 109547954 -92780393 + L1M4b LINE L1 367 781 -6078 2506 180 40 72 chr4 109547959 109548527 -92779820 + MLT2B3 LTR ERVL 5 554 0 621 289 93 15 chr4 109548561 109548927 -92779420 + L1M4b LINE L1 1959 2472 -4596 486 296 42 34 chr4 109549345 109549727 -92778620 + L1M4b LINE L1 2663 3047 -4091 624 204 210 6 chr4 109549889 109550051 -92778296 - MER58 DNA MER1_type -2224 196 2 1829 188 10 34 chr4 109550078 109550494 -92777853 - L1MA7 LINE L1 -1 6290 5885 2740 163 10 2 chr4 109550486 109550976 -92777371 + L1MA7 LINE L1 5369 5862 -429 382 315 19 0 chr4 109550969 109551131 -92777216 + L1M4b LINE L1 3043 3207 -3750 * 702 80 0 0 chr4 109551111 109551199 -92777148 + L1P LINE L1 13 100 -6046 * 17217 194 33 91 chr4 109551182 109555200 -92773147 + L1MB8 LINE L1 297 3837 -2341 1486 208 3 23 chr4 109555200 109555503 -92772844 + AluJo SINE Alu 1 297 -15 17217 194 33 91 chr4 109555503 109557660 -92770687 + L1MB8 LINE L1 3837 6117 -61 860 236 58 27 chr4 109557701 109557993 -92770354 + L1M4b LINE L1 4155 4455 -2502 215 381 0 0 chr4 109558620 109558704 -92769643 + MIR SINE MIR 159 242 -20 1639 222 98 42 chr4 109559126 109559604 -92768743 + MLT1D LTR MaLR 1 505 0 324 302 19 25 chr4 109559896 109560055 -92768292 - L1ME LINE L1 -375 5746 5589 25 83 0 0 chr4 109560206 109560266 -92768081 + AT_rich Low_complexity Low_complexity 1 60 0 190 255 0 43 chr4 109560348 109560395 -92767952 - L2 LINE L2 -76 3237 3193 455 182 94 20 chr4 109560426 109560522 -92767825 + MLT1D LTR MaLR 259 334 -56 208 243 29 86 chr4 109560990 109561060 -92767287 + L2 LINE L2 3236 3301 -12 354 256 64 0 chr4 109561711 109561789 -92766558 - MLT1D LTR MaLR -421 84 2 7049 185 23 22 chr4 109562036 109563707 -92764640 + L1MA4 LINE L1 4692 6371 -740 2177 104 10 0 chr4 109563707 109564014 -92764333 + AluSg SINE Alu 1 310 0 7049 185 23 22 chr4 109564014 109564750 -92763597 + L1MA4 LINE L1 6371 7105 -6 21 0 0 0 chr4 109564880 109564901 -92763446 + AT_rich Low_complexity Low_complexity 1 21 0 396 104 0 0 chr4 109565110 109565177 -92763170 + (TC)n Simple_repeat Simple_repeat 2 68 0 775 201 14 0 chr4 109565178 109565322 -92763025 - FRAM SINE Alu -29 147 2 29 28 0 0 chr4 109565504 109565540 -92762807 + AT_rich Low_complexity Low_complexity 1 36 0 426 264 89 73 chr4 109565949 109566252 -92762095 + L1MC/D LINE L1 5319 5626 -2182 406 109 54 0 chr4 109566261 109566353 -92761994 + (TA)n Simple_repeat Simple_repeat 1 97 0 205 319 22 44 chr4 109566549 109566640 -92761707 - MIR SINE MIR -66 142 54 21 0 0 0 chr4 109566868 109566889 -92761458 + AT_rich Low_complexity Low_complexity 1 21 0 464 341 22 0 chr4 109567164 109567390 -92760957 + L1MC1 LINE L1 5500 5730 -391 5008 128 31 9 chr4 109567641 109568303 -92760044 - L1PB2 LINE L1 -1 6150 5465 186 43 0 0 chr4 109568303 109568326 -92760021 + (TTA)n Simple_repeat Simple_repeat 2 24 0 5008 128 31 9 chr4 109568326 109568473 -92759874 - L1PB2 LINE L1 -686 5465 5323 6685 72 0 4 chr4 109568474 109569456 -92758891 - L1PA7 LINE L1 -4 6150 5166 21608 105 20 9 chr4 109569456 109572615 -92755732 - HUERS-P3b LTR ERV1 -1153 6265 3073 2371 192 33 2 chr4 109572615 109573043 -92755304 + LTR8 LTR ERV1 1 441 -250 15232 111 18 50 chr4 109573043 109573406 -92754941 - HUERS-P3 LTR ERV1 -4776 2642 2269 453 19 0 0 chr4 109573406 109573460 -92754887 + (TA)n Simple_repeat Simple_repeat 2 55 0 15232 111 18 50 chr4 109573460 109573611 -92754736 - HUERS-P3 LTR ERV1 -5149 2269 2115 2270 119 0 3 chr4 109573611 109573922 -92754425 - AluSq SINE Alu -3 310 1 15232 111 18 50 chr4 109573922 109576428 -92751919 - HUERS-P3 LTR ERV1 -5303 2115 18 4238 105 10 19 chr4 109576446 109577064 -92751283 - LTR9 LTR ERV1 0 612 1 1571 121 30 0 chr4 109577066 109577330 -92751017 + L1MA2 LINE L1 6027 6298 -6 218 345 207 9 chr4 109577459 109577575 -92750772 - MER5B DNA MER1_type -29 149 11 208 286 0 0 chr4 109578531 109578594 -92749753 + MIR SINE MIR 141 203 -59 317 318 194 9 chr4 109578732 109578907 -92749440 + MIR SINE MIR 6 230 -32 2166 113 0 7 chr4 109578907 109579209 -92749138 + AluSc SINE Alu 1 300 -9 317 318 194 9 chr4 109579209 109579250 -92749097 + MIR SINE MIR 230 262 0 11712 163 50 28 chr4 109579555 109579607 -92748740 + Tigger1 DNA MER2_type 1 50 -2368 270 0 0 0 chr4 109579607 109579637 -92748710 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 11712 163 50 28 chr4 109579637 109581948 -92746399 + Tigger1 DNA MER2_type 50 2417 -1 2249 89 10 0 chr4 109583701 109583994 -92744353 + AluSg1 SINE Alu 9 304 -5 2102 176 15 7 chr4 109584010 109584419 -92743928 + L1MC1 LINE L1 5922 6333 0 940 192 39 34 chr4 109585489 109585723 -92742624 - MIR SINE MIR -24 238 4 513 280 86 71 chr4 109585945 109586270 -92742077 - L1MC/D LINE L1 -1984 5824 5495 1451 191 96 7 chr4 109587135 109587438 -92740909 + MER57A LTR ERV1 74 403 0 497 307 34 30 chr4 109587977 109588244 -92740103 + L1MCc LINE L1 1167 1434 -4989 275 288 114 42 chr4 109588264 109588597 -92739750 + L1MCc LINE L1 1999 2355 -4767 233 191 0 0 chr4 109588683 109588725 -92739622 + MSTA LTR MaLR 374 415 -13 2084 119 144 6 chr4 109588743 109589105 -92739242 - MSTA LTR MaLR -14 414 3 571 243 207 0 chr4 109589549 109589718 -92738629 + MIR SINE MIR 56 259 -3 239 325 127 16 chr4 109591160 109591286 -92737061 + L2 LINE L2 2934 3073 -199 8863 216 33 17 chr4 109591332 109593631 -92734716 + L1MA10 LINE L1 2658 4992 -1154 4694 174 68 36 chr4 109593633 109594713 -92733634 + L1MA10 LINE L1 5230 6157 -9 680 132 50 25 chr4 109595106 109595227 -92733120 + L1PB4 LINE L1 6028 6151 -5 225 348 36 54 chr4 109596127 109596239 -92732108 + L2 LINE L2 3163 3272 0 24 0 0 0 chr4 109597434 109597458 -92730889 + AT_rich Low_complexity Low_complexity 1 24 0 339 307 71 90 chr4 109598437 109598649 -92729698 + MIR SINE MIR 37 244 -18 568 280 121 8 chr4 109599401 109599675 -92728672 - MLT1G3 LTR MaLR -14 581 187 256 262 73 29 chr4 109600812 109601014 -92727333 + L1ME3 LINE L1 5429 5648 -536 1161 150 45 38 chr4 109601127 109601414 -92726933 - THE1C LTR MaLR 0 375 1 346 329 73 12 chr4 109601422 109601586 -92726761 + L1ME3 LINE L1 5783 5956 -206 26 30 0 0 chr4 109601592 109601625 -92726722 + AT_rich Low_complexity Low_complexity 1 33 0 872 241 89 19 chr4 109601937 109602194 -92726153 - MLT1C LTR MaLR 0 467 193 274 329 25 0 chr4 109602269 109602348 -92725999 - MLT1C LTR MaLR -424 81 1 418 250 58 8 chr4 109603840 109603960 -92724387 + LTR16C LTR ERVL 366 491 0 1647 184 144 8 chr4 109604104 109604479 -92723868 + MSTB LTR MaLR 1 426 0 1486 225 78 43 chr4 109604671 109605159 -92723188 + MLT1D LTR MaLR 1 505 0 354 337 83 33 chr4 109605159 109605435 -92722912 + L2 LINE L2 3024 3313 0 2158 142 26 0 chr4 109606623 109606933 -92721414 - LTR18A LTR ERVL -39 318 1 7226 178 32 0 chr4 109606934 109608137 -92720210 - HERVL18 LTR ERVL 0 6047 4806 2584 103 3 0 chr4 109608137 109608486 -92719861 - THE1A LTR MaLR 0 355 6 10761 148 11 1 chr4 109608486 109610104 -92718243 - HERVL18 LTR ERVL -1237 4810 3177 1009 275 142 48 chr4 109611035 109611517 -92716830 + L1MCa LINE L1 64 482 -5563 25 31 0 0 chr4 109611575 109611607 -92716740 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr4 109611627 109611657 -92716690 + AT_rich Low_complexity Low_complexity 1 30 0 773 172 93 179 chr4 109611840 109612259 -92716088 - LOR1a LTR ERV1 0 497 115 466 221 11 0 chr4 109612286 109612381 -92715966 - LOR1a-int LTR ERV1 0 8120 8025 3104 199 50 19 chr4 109612384 109613159 -92715188 - LOR1a-int LTR ERV1 -422 7698 4773 896 167 18 24 chr4 109613162 109613330 -92715017 - MER49 LTR ERV1 -753 170 4 1438 173 182 19 chr4 109613333 109613657 -92714690 - MER49-int LTR ERV1 -1 7097 6381 1513 152 89 11 chr4 109613680 109614009 -92714338 - MER49-int LTR ERV1 -599 6159 3777 496 167 44 26 chr4 109614000 109614114 -92714233 - LOR1a-int LTR ERV1 -2189 4142 4027 * 972 128 45 0 chr4 109614303 109614459 -92713888 - LOR1a-int LTR ERV1 -4342 3778 3616 12776 130 75 66 chr4 109614466 109614843 -92713504 - LOR1a-int LTR ERV1 -5237 2883 2511 3917 43 8 0 chr4 109614843 109615328 -92713019 - L1PA3 LINE L1 0 6155 5667 12776 130 75 66 chr4 109615328 109617259 -92711088 - LOR1a-int LTR ERV1 -5609 2511 500 301 156 0 0 chr4 109617259 109617304 -92711043 - 5S rRNA rRNA -70 51 7 12776 130 75 66 chr4 109617304 109617723 -92710624 - LOR1a-int LTR ERV1 -7620 500 86 25 31 0 0 chr4 109618300 109618332 -92710015 + AT_rich Low_complexity Low_complexity 1 32 0 3028 61 8 2 chr4 109618417 109618811 -92709536 - L1PA7 LINE L1 -1 6153 5758 2605 49 6 0 chr4 109618811 109619135 -92709212 + L1P3 LINE L1 5337 5662 -492 21 0 0 0 chr4 109619409 109619430 -92708917 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 109619983 109620005 -92708342 + AT_rich Low_complexity Low_complexity 1 22 0 1182 191 9 123 chr4 109620450 109620790 -92707557 + AluJo SINE Alu 2 302 0 343 262 90 26 chr4 109621212 109621479 -92706868 - L1MC5 LINE L1 -195 7766 7483 338 294 134 48 chr4 109621866 109622322 -92706025 - HAL1b LINE L1 -800 548 54 447 316 86 60 chr4 109623683 109624413 -92703934 - MERVL LTR ERVL -2016 3469 2721 424 296 17 40 chr4 109624865 109625041 -92703306 - MER21-int LTR ERV1 -2314 1877 1706 26 82 0 0 chr4 109627050 109627111 -92701236 + AT_rich Low_complexity Low_complexity 1 61 0 360 304 159 0 chr4 109627245 109627383 -92700964 + MIR SINE MIR 2 161 -101 1675 103 0 0 chr4 109627486 109627718 -92700629 - LOR1a LTR ERV1 -265 232 1 450 112 4 0 chr4 109627889 109627958 -92700389 - THE1A LTR MaLR 0 355 294 26 30 0 0 chr4 109628439 109628472 -92699875 + AT_rich Low_complexity Low_complexity 1 33 0 1152 150 33 0 chr4 109628948 109629128 -92699219 - AluSg SINE Alu -2 310 125 268 271 47 0 chr4 109629164 109629249 -92699098 - L1MC4 LINE L1 -1339 6703 6615 236 272 0 33 chr4 109629244 109629336 -92699011 - L1MC4 LINE L1 -1339 6703 6615 * 357 148 37 0 chr4 109629338 109629419 -92698928 + (TA)n Simple_repeat Simple_repeat 1 84 0 755 88 132 0 chr4 109629419 109629533 -92698814 - AluSg SINE Alu -181 129 1 195 42 0 0 chr4 109630881 109630905 -92697442 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 532 297 41 38 chr4 109630937 109631304 -92697043 - HAL1b LINE L1 -755 593 226 777 238 61 39 chr4 109631327 109631558 -92696789 - L1M4 LINE L1 -6300 242 7 26 0 0 0 chr4 109631770 109631796 -92696551 + AT_rich Low_complexity Low_complexity 1 26 0 1943 182 93 19 chr4 109632382 109632799 -92695548 + MSTB2 LTR MaLR 10 457 0 604 290 55 47 chr4 109633300 109633555 -92694792 + MIR SINE MIR 6 262 0 1948 211 11 61 chr4 109634408 109634848 -92693499 + MLT1C-int LTR MaLR 954 1371 0 1611 213 40 67 chr4 109634849 109635328 -92693019 + MLT1C LTR MaLR 2 467 0 226 185 49 74 chr4 109635330 109635411 -92692936 - L2 LINE L2 -1340 1974 1896 209 381 0 8 chr4 109635769 109635895 -92692452 - L2 LINE L2 -1876 1438 1314 624 105 79 0 chr4 109637203 109637317 -92691030 - L1MA5A LINE L1 0 6297 6175 279 0 0 0 chr4 109637418 109637449 -92690898 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1481 225 5 30 chr4 109637450 109637823 -92690524 + L1M4 LINE L1 3746 4109 -2037 11073 55 11 13 chr4 109637830 109639219 -92689128 - SVA Other Other 0 1386 1 216 398 48 0 chr4 109639296 109639399 -92688948 + L2 LINE L2 3188 3295 -18 1435 138 29 112 chr4 109640251 109640591 -92687756 + AluJo SINE Alu 1 312 0 21 0 0 0 chr4 109644596 109644617 -92683730 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chr4 109645626 109645667 -92682680 + (CA)n Simple_repeat Simple_repeat 2 42 0 241 276 153 31 chr4 109645764 109645862 -92682485 - MIR SINE MIR -147 115 6 24 0 0 0 chr4 109646247 109646271 -92682076 + AT_rich Low_complexity Low_complexity 1 24 0 2482 128 43 10 chr4 109646305 109646719 -92681628 - MSTA LTR MaLR 0 428 1 386 343 162 8 chr4 109647818 109648182 -92680165 + L2 LINE L2 1789 2208 -1106 32920 61 7 1 chr4 109648256 109654357 -92673990 - L1PA4 LINE L1 -8 6147 11 268 176 154 22 chr4 109655291 109655382 -92672965 + L1MC4 LINE L1 6550 6708 -1133 542 326 78 30 chr4 109655486 109656011 -92672336 + L2 LINE L2 2146 2787 -527 355 352 58 56 chr4 109656050 109656496 -92671851 + L2 LINE L2 2867 3313 0 248 310 69 28 chr4 109656717 109656933 -92671414 + L1ME LINE L1 5608 5832 -289 1815 182 32 16 chr4 109657134 109657503 -92670844 + THE1C LTR MaLR 1 375 0 2350 79 0 13 chr4 109657749 109658064 -92670283 - AluY SINE Alu 0 311 1 22 25 0 25 chr4 109658530 109658541 -92669806 + AT_rich Low_complexity Low_complexity 1 11 -28 769 99 25 0 chr4 109658541 109658662 -92669685 + L1MB3 LINE L1 6052 6175 -8 22 25 0 25 chr4 109658662 109658690 -92669657 + AT_rich Low_complexity Low_complexity 11 39 0 204 111 0 0 chr4 109658806 109658842 -92669505 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 13473 29 1 0 chr4 109658844 109661184 -92667163 - L1PA4 LINE L1 -26 6129 3788 614 239 18 93 chr4 109661574 109661800 -92666547 - MER63A DNA MER1_type 0 210 2 313 379 17 0 chr4 109661812 109661928 -92666419 - L2 LINE L2 0 3313 3196 2052 287 72 16 chr4 109661933 109662799 -92665548 + L2 LINE L2 2237 3227 -86 1007 159 4 31 chr4 109662931 109663158 -92665189 - L1MA4 LINE L1 -2 6298 6078 625 161 66 15 chr4 109663159 109663296 -92665051 - L1MA4 LINE L1 -310 5995 5852 23 33 0 0 chr4 109663374 109663404 -92664943 + AT_rich Low_complexity Low_complexity 1 30 0 4468 178 25 74 chr4 109664115 109664159 -92664188 + Tigger6a DNA MER2_type 34 79 -1518 2270 71 0 0 chr4 109664159 109664499 -92663848 + AluY SINE Alu 1 340 0 4468 178 25 74 chr4 109664499 109664806 -92663541 + Tigger6a DNA MER2_type 79 399 -1198 737 238 0 0 chr4 109664806 109664953 -92663394 + FRAM SINE Alu 2 148 -18 4468 178 25 74 chr4 109664953 109665703 -92662644 + Tigger6a DNA MER2_type 399 1083 0 297 0 0 0 chr4 109666138 109666171 -92662176 + (CA)n Simple_repeat Simple_repeat 2 34 0 2510 121 62 9 chr4 109666195 109666617 -92661730 - Tigger2 DNA MER2_type -2 2716 2273 430 138 15 0 chr4 109666607 109666672 -92661675 - Tigger2 DNA MER2_type -2649 69 4 * 517 191 46 20 chr4 109667012 109667164 -92661183 - L1M4 LINE L1 -3708 2438 2283 2105 162 58 112 chr4 109667232 109667856 -92660491 - LTR38B LTR ERV1 -20 590 1 335 341 67 0 chr4 109668408 109668572 -92659775 + L1ME LINE L1 5510 5684 -437 824 229 70 53 chr4 109669317 109669658 -92658689 - L1M4 LINE L1 -3513 2633 2287 1878 251 75 32 chr4 109669758 109669797 -92658550 - L1ME1 LINE L1 -19 6958 6922 3477 115 2 8 chr4 109669797 109670311 -92658036 - MER9 LTR ERVK 0 511 1 1878 251 75 32 chr4 109670311 109670923 -92657424 - L1ME1 LINE L1 -55 6922 6279 459 205 82 8 chr4 109670974 109671096 -92657251 - L1MA8 LINE L1 -4 6287 6157 994 220 100 81 chr4 109671126 109671648 -92656699 - L1ME1 LINE L1 -3378 3579 3048 * 1850 261 91 77 chr4 109671639 109672326 -92656021 - L1ME1 LINE L1 -4588 2371 1695 213 39 0 0 chr4 109672326 109672352 -92655995 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1850 261 91 77 chr4 109672352 109672471 -92655876 - L1ME1 LINE L1 -5264 1695 1579 15687 31 0 2 chr4 109672471 109675123 -92653224 - L1PA3 LINE L1 0 6155 3507 1850 261 91 77 chr4 109675123 109676033 -92652314 - L1ME1 LINE L1 -5380 1579 650 321 281 110 2 chr4 109676042 109676214 -92652133 - L1ME1 LINE L1 -6360 495 11 3354 265 47 24 chr4 109676218 109676851 -92651496 - L1M4 LINE L1 -848 5298 4681 1451 164 82 15 chr4 109676851 109677164 -92651183 - AluSx SINE Alu 0 331 1 3354 265 47 24 chr4 109677164 109677912 -92650435 - L1M4 LINE L1 -1465 4681 3883 292 61 45 30 chr4 109677999 109678065 -92650282 + CT-rich Low_complexity Low_complexity 1 67 0 1178 237 119 39 chr4 109678082 109678773 -92649574 - L1M4 LINE L1 -2512 3634 2889 742 259 37 23 chr4 109678775 109679207 -92649140 + MLT1E LTR MaLR 1 532 -61 632 236 6 38 chr4 109679211 109679244 -92649103 + FRAM SINE Alu 1 34 -278 2222 111 32 22 chr4 109679244 109679615 -92648732 + THE1C LTR MaLR 1 375 0 632 236 6 38 chr4 109679615 109679738 -92648609 + FRAM SINE Alu 34 152 -24 23 0 0 0 chr4 109679794 109679817 -92648530 + AT_rich Low_complexity Low_complexity 1 23 0 1350 260 56 4 chr4 109679880 109680346 -92648001 - L1M4 LINE L1 -3255 2891 2402 321 325 0 33 chr4 109681282 109681402 -92646945 - L1MC4 LINE L1 -1313 6729 6614 * 367 247 45 0 chr4 109681326 109681415 -92646932 + L1MC4 LINE L1 6614 6706 -1336 24 0 0 0 chr4 109681950 109681974 -92646373 + AT_rich Low_complexity Low_complexity 1 24 0 207 342 13 0 chr4 109683208 109683287 -92645060 + L2 LINE L2 3223 3302 -11 180 111 0 0 chr4 109683288 109683315 -92645032 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 6461 102 17 0 chr4 109683995 109685347 -92643000 - L1PA11 LINE L1 0 6174 4809 201 148 19 37 chr4 109685505 109685559 -92642788 + (TTATG)n Simple_repeat Simple_repeat 2 54 0 410 314 21 27 chr4 109686276 109686464 -92641883 + LTR33 LTR ERVL 334 520 -1 2291 94 0 0 chr4 109687033 109687332 -92641015 + AluSc SINE Alu 1 299 -10 204 312 88 48 chr4 109687431 109687556 -92640791 - L3 LINE CR1 -11 1566 1437 193 287 85 11 chr4 109687695 109687789 -92640558 - L3 LINE CR1 -294 1283 1183 11698 144 60 6 chr4 109688089 109690066 -92638281 + Tigger1 DNA MER2_type 1 2083 -335 9947 166 46 33 chr4 109690068 109692649 -92635698 + L1MA4 LINE L1 2967 5786 -514 327 65 0 0 chr4 109692649 109692695 -92635652 + MADE1 DNA Mariner 1 46 -34 9947 166 46 33 chr4 109692695 109692844 -92635503 + L1MA4 LINE L1 5786 5932 -368 838 177 0 49 chr4 109692845 109693019 -92635328 + L1MA4 LINE L1 6102 6266 -34 2202 117 0 3 chr4 109693019 109693317 -92635030 - AluSx SINE Alu -15 297 1 838 177 0 49 chr4 109693317 109693345 -92635002 + L1MA4 LINE L1 6266 6294 -6 1997 148 24 0 chr4 109693393 109693725 -92634622 + Tigger1 DNA MER2_type 2079 2418 0 1437 185 65 11 chr4 109693765 109694041 -92634306 + AluSx SINE Alu 1 291 -21 264 210 12 25 chr4 109694153 109694234 -92634113 - L1PB4 LINE L1 -9 6147 6068 1235 187 20 37 chr4 109694251 109694551 -92633796 - L1MA4 LINE L1 -9 6291 5997 2111 117 3 0 chr4 109694595 109694907 -92633440 - AluSx SINE Alu 0 313 1 195 200 164 0 chr4 109695293 109695348 -92632999 + MIR SINE MIR 180 243 -19 28 71 0 0 chr4 109695357 109695413 -92632934 + AT_rich Low_complexity Low_complexity 1 56 0 194 384 109 24 chr4 109695435 109695646 -92632701 + L2 LINE L2 2829 3057 -215 334 377 15 0 chr4 109696249 109696379 -92631968 + L2 LINE L2 3141 3272 0 258 273 0 0 chr4 109696565 109696642 -92631705 + (TA)n Simple_repeat Simple_repeat 1 77 0 1423 178 33 46 chr4 109696770 109697074 -92631273 + AluJo SINE Alu 1 300 -2 1989 143 0 0 chr4 109698374 109698667 -92629680 - AluSx SINE Alu -15 297 5 1636 191 77 20 chr4 109698911 109699351 -92628996 - MLT1C LTR MaLR 0 467 3 2248 90 7 3 chr4 109699364 109699664 -92628683 + AluSx SINE Alu 1 301 -11 314 224 63 127 chr4 109699847 109700052 -92628295 + L2 LINE L2 3122 3313 0 359 353 19 6 chr4 109700825 109700981 -92627366 + MIR SINE MIR 48 205 -57 1399 173 109 6 chr4 109701179 109701319 -92627028 - L1MA10 LINE L1 -7 6323 6199 212 59 29 0 chr4 109701319 109701353 -92626994 + (TG)n Simple_repeat Simple_repeat 2 36 0 1399 173 109 6 chr4 109701353 109701571 -92626776 - L1MA10 LINE L1 -131 6199 5906 241 61 0 0 chr4 109701568 109701601 -92626746 + L1MA10 LINE L1 5874 5906 -274 * 255 289 164 65 chr4 109702569 109702635 -92625712 - MIR SINE MIR -6 256 198 3069 139 15 26 chr4 109702635 109703168 -92625179 + MER1A DNA MER1_type 1 527 0 255 289 164 65 chr4 109703168 109703333 -92625014 - MIR SINE MIR -64 198 2 30 27 0 0 chr4 109704265 109704302 -92624045 + AT_rich Low_complexity Low_complexity 1 37 0 185 0 40 0 chr4 109704641 109704666 -92623681 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr4 109704738 109704766 -92623581 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr4 109704907 109704936 -92623411 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7476 29 2 0 chr4 109707176 109708385 -92619962 - L1PA4 LINE L1 -3 6152 4942 24 0 0 0 chr4 109708880 109708904 -92619443 + AT_rich Low_complexity Low_complexity 1 24 0 8234 189 28 27 chr4 109709219 109710835 -92617512 + L1MA3 LINE L1 17 1633 -5932 420 37 102 20 chr4 109710838 109711074 -92617273 + (TA)n Simple_repeat Simple_repeat 1 255 0 679 55 33 44 chr4 109711088 109711269 -92617078 + (TA)n Simple_repeat Simple_repeat 2 180 0 212 97 32 65 chr4 109711280 109711342 -92617005 + T-rich Low_complexity Low_complexity 3 62 0 352 122 24 0 chr4 109711342 109711424 -92616923 + (TA)n Simple_repeat Simple_repeat 1 84 0 1025 55 0 0 chr4 109711424 109711551 -92616796 - L1PA5 LINE L1 -9 6145 6019 5202 139 32 11 chr4 109711551 109712412 -92615935 + L1MA3 LINE L1 1627 2506 -5059 6326 122 35 7 chr4 109712422 109713711 -92614636 + L1MA3 LINE L1 6395 7718 -6 23 33 0 0 chr4 109715409 109715439 -92612908 + AT_rich Low_complexity Low_complexity 1 30 0 361 371 72 8 chr4 109715555 109715792 -92612555 + L3 LINE CR1 408 659 -918 309 252 34 68 chr4 109718198 109718345 -92610002 - MIR SINE MIR -51 211 70 243 0 0 0 chr4 109718431 109718458 -92609889 + (TC)n Simple_repeat Simple_repeat 2 28 0 235 162 0 0 chr4 109718458 109718495 -92609852 - Alu SINE Alu -14 285 249 924 192 24 29 chr4 109718559 109718767 -92609580 + MER3 DNA MER1_type 1 207 -2 2968 124 15 25 chr4 109718928 109719454 -92608893 - L1MA4 LINE L1 -10 6290 5770 5179 110 18 63 chr4 109719575 109720527 -92607820 - L1MA7 LINE L1 -5 6286 5378 3261 173 11 23 chr4 109720527 109721023 -92607324 + L1 LINE L1 4697 5183 -983 1688 87 13 9 chr4 109721023 109721252 -92607095 + MER30 DNA MER1_type 1 230 0 3261 173 11 23 chr4 109721252 109721491 -92606856 + L1 LINE L1 5183 5423 -743 23 33 0 0 chr4 109721755 109721785 -92606562 + AT_rich Low_complexity Low_complexity 1 30 0 700 317 75 4 chr4 109721960 109722200 -92606147 - MIR SINE MIR -4 258 2 18868 30 1 1 chr4 109722284 109725343 -92603004 - L1PA4 LINE L1 -1 6154 3096 194 146 0 24 chr4 109725893 109725934 -92602413 + (GGGAGA)n Simple_repeat Simple_repeat 3 42 0 254 234 0 0 chr4 109726151 109726198 -92602149 - L2 LINE L2 -8 3264 3218 1770 155 13 7 chr4 109728159 109728469 -92599878 + L1PB1 LINE L1 5837 6148 -3 24 0 0 0 chr4 109728469 109728493 -92599854 + AT_rich Low_complexity Low_complexity 1 24 0 206 284 137 0 chr4 109728640 109728742 -92599605 - MIR SINE MIR -38 224 109 25 0 0 0 chr4 109728846 109728871 -92599476 + AT_rich Low_complexity Low_complexity 1 25 0 2866 87 0 22 chr4 109729205 109729618 -92598729 - L1PA8A LINE L1 0 6131 5728 212 262 0 0 chr4 109730056 109730098 -92598249 + L2 LINE L2 3186 3227 -45 * 318 335 102 18 chr4 109730092 109730259 -92598088 - MIR3 SINE MIR -17 191 11 23 0 0 0 chr4 109730408 109730431 -92597916 + AT_rich Low_complexity Low_complexity 1 23 0 22280 57 7 18 chr4 109730554 109734327 -92594020 - L1PA6 LINE L1 -6 6148 2405 1554 172 3 41 chr4 109734331 109734644 -92593703 - AluSx SINE Alu 0 312 11 2046 129 0 28 chr4 109734677 109734995 -92593352 - AluSg SINE Alu -1 309 1 1973 183 24 5 chr4 109735762 109736140 -92592207 - MLT1B LTR MaLR -5 385 1 234 326 0 12 chr4 109736853 109736939 -92591408 + CT-rich Low_complexity Low_complexity 2 86 0 21 36 0 0 chr4 109738723 109738751 -92589596 + AT_rich Low_complexity Low_complexity 1 28 0 1807 69 9 0 chr4 109739207 109739439 -92588908 - AluY SINE Alu -77 234 1 532 318 128 57 chr4 109739583 109740499 -92587848 + L2 LINE L2 1776 2756 -558 4734 155 44 19 chr4 109740984 109741994 -92586353 - L1PA16 LINE L1 0 6166 5134 2125 245 6 2 chr4 109742023 109742399 -92585948 + L1P LINE L1 3807 4187 -1959 2189 103 7 0 chr4 109742399 109742689 -92585658 + AluSx SINE Alu 1 292 -20 2125 245 6 2 chr4 109742689 109742793 -92585554 + L1P LINE L1 4187 4289 -1857 4250 212 11 11 chr4 109742798 109743782 -92584565 + L1 LINE L1 4152 5135 -1011 350 266 83 9 chr4 109744575 109744810 -92583537 - L1M4b LINE L1 -4887 1536 1300 21 36 0 0 chr4 109744897 109744925 -92583422 + AT_rich Low_complexity Low_complexity 1 28 0 1676 188 0 3 chr4 109744925 109745212 -92583135 - AluJb SINE Alu -26 286 1 286 241 28 35 chr4 109745388 109745533 -92582814 + (TA)n Simple_repeat Simple_repeat 2 145 0 198 71 0 0 chr4 109745551 109745579 -92582768 + (CA)n Simple_repeat Simple_repeat 2 29 0 303 28 0 0 chr4 109746442 109746478 -92581869 + (TC)n Simple_repeat Simple_repeat 1 36 0 207 0 0 0 chr4 109746477 109746500 -92581847 + (CA)n Simple_repeat Simple_repeat 1 23 0 * 2560 45 0 7 chr4 109746684 109746992 -92581355 + AluY SINE Alu 4 309 -2 243 256 12 49 chr4 109747185 109747267 -92581080 + MIR SINE MIR 60 138 -70 474 271 81 8 chr4 109747770 109747954 -92580393 + MLT1B LTR MaLR 1 187 -187 258 211 0 18 chr4 109747954 109748011 -92580336 + CT-rich Low_complexity Low_complexity 1 56 0 800 241 18 0 chr4 109748036 109748206 -92580141 + MLT1B LTR MaLR 207 379 -11 1584 109 4 38 chr4 109748256 109748495 -92579852 + AluSg SINE Alu 7 237 -73 306 295 208 38 chr4 109748503 109748686 -92579661 - MIR SINE MIR -48 214 1 715 355 110 21 chr4 109748971 109749069 -92579278 - L2 LINE L2 0 3313 3225 1933 117 23 13 chr4 109749069 109749377 -92578970 + AluSx SINE Alu 1 311 -1 715 355 110 21 chr4 109749377 109750146 -92578201 - L2 LINE L2 -88 3225 2365 183 333 0 13 chr4 109750289 109750367 -92577980 + MIR SINE MIR 176 252 -10 5583 164 17 19 chr4 109750443 109752406 -92575941 + L1MA6 LINE L1 4338 6300 0 190 262 33 16 chr4 109752924 109752985 -92575362 - L2 LINE L2 0 3313 3252 409 326 170 20 chr4 109753190 109753322 -92575025 + L2 LINE L2 1645 1756 -1558 3130 148 18 0 chr4 109753322 109753830 -92574517 - L1PA16 LINE L1 -16 6150 5634 409 326 170 20 chr4 109753830 109754197 -92574150 + L2 LINE L2 1756 2219 -1095 53 30 0 0 chr4 109754367 109754434 -92573913 + AT_rich Low_complexity Low_complexity 1 67 0 859 39 0 0 chr4 109754729 109754832 -92573515 - L1PA3 LINE L1 -2242 3904 3802 12073 31 8 0 chr4 109754831 109757049 -92571298 + L1PA3 LINE L1 3927 6155 0 6543 83 12 1 chr4 109757063 109758016 -92570331 - L1PA16 LINE L1 -743 5403 4459 3050 41 0 0 chr4 109758016 109758381 -92569966 + L1PA7 LINE L1 5465 5829 -325 24245 24 4 0 chr4 109758382 109760654 -92567693 + L1PA4 LINE L1 49 2303 -3852 24245 39 3 0 chr4 109760654 109764419 -92563928 + L1PA4 LINE L1 2386 6152 -3 24245 24 4 0 chr4 109764419 109764441 -92563906 + L1PA4 LINE L1 2303 6152 -3 6224 31 4 0 chr4 109764528 109765270 -92563077 + L1PA4 LINE L1 5408 6152 -3 180 0 0 0 chr4 109765302 109765322 -92563025 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6415 25 0 0 chr4 109765379 109766127 -92562220 + L1PA3 LINE L1 5408 6155 0 21 36 0 0 chr4 109767045 109767073 -92561274 + AT_rich Low_complexity Low_complexity 1 28 0 2234 101 0 7 chr4 109767404 109767700 -92560647 + AluSg SINE Alu 1 294 -16 670 318 113 18 chr4 109767900 109768280 -92560067 - L2 LINE L2 -5 3308 2893 23 0 0 0 chr4 109768406 109768429 -92559918 + AT_rich Low_complexity Low_complexity 1 23 0 341 355 74 0 chr4 109769311 109769432 -92558915 - L2 LINE L2 -2 3270 3141 222 37 0 0 chr4 109773881 109773908 -92554439 + (CA)n Simple_repeat Simple_repeat 2 28 0 314 290 105 40 chr4 109776159 109776359 -92551988 + MIR SINE MIR 40 252 -10 927 301 46 65 chr4 109776375 109776952 -92551395 + L2 LINE L2 2648 3221 -92 23 68 0 0 chr4 109777055 109777099 -92551248 + AT_rich Low_complexity Low_complexity 1 44 0 2326 29 0 0 chr4 109777154 109777449 -92550898 + L1PA4 LINE L1 5870 6164 0 2561 230 118 16 chr4 109777457 109778685 -92549662 + L1MB7 LINE L1 1532 2889 -3493 268 167 0 0 chr4 109778685 109778727 -92549620 - Tigger7 DNA MER2_type -297 42 1 * 427 167 90 0 chr4 109778727 109778796 -92549551 + MLT2B1 LTR ERVL 354 429 -91 3243 200 23 41 chr4 109778806 109779595 -92548752 + L1MB7 LINE L1 5646 6420 0 27 0 0 0 chr4 109779957 109779984 -92548363 + AT_rich Low_complexity Low_complexity 1 27 0 1640 167 4 11 chr4 109780007 109780270 -92548077 - AluJo SINE Alu -35 277 17 621 310 57 81 chr4 109780297 109780755 -92547592 - LTR67 LTR ERVL -106 451 5 2008 88 4 11 chr4 109782124 109782398 -92545949 - AluY SINE Alu -1 310 39 205 301 27 0 chr4 109782481 109782554 -92545793 + (CATCC)n Simple_repeat Simple_repeat 2 76 0 21 36 0 0 chr4 109782775 109782803 -92545544 + AT_rich Low_complexity Low_complexity 1 28 0 2088 121 20 0 chr4 109784198 109784675 -92543672 + AluSp SINE Alu 3 485 0 1039 112 11 11 chr4 109784496 109784710 -92543637 + (GAAA)n Simple_repeat Simple_repeat 2 215 0 396 329 63 25 chr4 109790062 109790220 -92538127 - MIR SINE MIR -87 175 12 2280 100 7 3 chr4 109790399 109790708 -92537639 - AluY SINE Alu -1 310 1 22 0 0 0 chr4 109791001 109791023 -92537324 + AT_rich Low_complexity Low_complexity 1 22 0 226 327 125 10 chr4 109791270 109791374 -92536973 - L2 LINE L2 -220 3052 2937 21 0 0 0 chr4 109791737 109791758 -92536589 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 109792656 109792681 -92535666 + AT_rich Low_complexity Low_complexity 1 25 0 592 333 96 35 chr4 109792681 109793075 -92535272 - L2 LINE L2 -19 3294 2877 1036 256 175 11 chr4 109793386 109793827 -92534520 + L2 LINE L2 1859 2371 -943 1073 275 132 28 chr4 109793830 109794299 -92534048 + LTR53 LTR ERVL 2 519 0 520 380 138 15 chr4 109794299 109795129 -92533218 + L2 LINE L2 2372 3313 0 5736 189 17 14 chr4 109795777 109796980 -92531367 - L1P LINE L1 -2792 3354 2149 948 252 160 5 chr4 109797320 109797689 -92530658 - L1ME LINE L1 -359 5811 5386 2214 265 77 26 chr4 109797796 109799011 -92529336 - L1ME LINE L1 -747 5399 4146 344 202 0 43 chr4 109799052 109799146 -92529201 - L1MA8 LINE L1 -10 6281 6192 4609 205 30 3 chr4 109799161 109800909 -92527438 - L1MA9 LINE L1 -232 6080 4295 2877 178 41 16 chr4 109800903 109801516 -92526831 + L1MA9 LINE L1 3652 4279 -1867 * 974 214 11 6 chr4 109801561 109801743 -92526604 + Tigger2 DNA MER2_type 2535 2717 -1 2508 104 58 21 chr4 109802400 109802832 -92525515 + LTR7 LTR ERV1 1 448 -2 20588 93 18 7 chr4 109802834 109805798 -92522549 + HERVH LTR ERV1 1 2995 -4718 915 133 7 0 chr4 109805777 109805927 -92522420 + HERVH LTR ERV1 3140 3290 -4423 * 3229 115 10 0 chr4 109805926 109806413 -92521934 + HERVH LTR ERV1 3500 3991 -3722 * 4202 152 8 1 chr4 109806412 109807077 -92521270 + HERVH LTR ERV1 4481 5149 -2564 1391 124 17 17 chr4 109807062 109807295 -92521052 + HERVH LTR ERV1 5587 5819 -1894 * 2406 90 48 13 chr4 109807295 109807672 -92520675 + HERVH LTR ERV1 7324 7713 0 2358 121 60 21 chr4 109807672 109808103 -92520244 + LTR7 LTR ERV1 1 448 -2 1389 209 134 0 chr4 109808361 109808681 -92519666 - MER47A DNA MER2_type 0 366 4 819 149 43 0 chr4 109808683 109808844 -92519503 - L1MA8 LINE L1 -28 6263 6096 261 367 0 9 chr4 109809149 109809258 -92519089 + MIR SINE MIR 100 207 -55 2141 131 0 16 chr4 109809693 109810006 -92518341 - AluSx SINE Alu -4 308 1 21 0 0 0 chr4 109810015 109810036 -92518311 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 109810320 109810345 -92518002 + AT_rich Low_complexity Low_complexity 1 25 0 314 273 10 50 chr4 109810728 109810827 -92517520 + MLT1H LTR MaLR 61 155 -394 322 217 253 24 chr4 109810994 109811160 -92517187 + MLT1H LTR MaLR 320 523 -26 230 162 0 0 chr4 109811280 109811317 -92517030 + MER57A LTR ERV1 2 38 -365 1441 150 0 9 chr4 109811343 109811570 -92516777 + MER4E LTR ERV1 555 779 0 1854 179 21 0 chr4 109813176 109813512 -92514835 - MER2 DNA MER2_type 0 344 2 1663 224 151 52 chr4 109813633 109814290 -92514057 + MER50 LTR ERV1 1 722 -12 319 316 10 0 chr4 109814304 109814402 -92513945 - MIR SINE MIR -7 255 157 657 192 0 0 chr4 109814403 109814507 -92513840 + LTR18A LTR ERVL 1 104 -253 3906 151 23 0 chr4 109814511 109815115 -92513232 + HERVL18 LTR ERVL 5430 6047 0 1258 218 149 37 chr4 109815116 109815338 -92513009 + LTR18A LTR ERVL 1 271 -86 2562 50 3 0 chr4 109815338 109815641 -92512706 - AluY SINE Alu -7 304 1 1258 218 149 37 chr4 109815641 109815739 -92512608 + LTR18A LTR ERVL 271 357 0 199 273 23 0 chr4 109815746 109815790 -92512557 - MIR SINE MIR -203 59 15 388 149 35 0 chr4 109816195 109816282 -92512065 - L1PA13 LINE L1 -3 6160 6071 234 319 86 0 chr4 109817398 109817514 -92510833 - MER94 DNA DNA 0 134 9 23 0 0 0 chr4 109817553 109817576 -92510771 + AT_rich Low_complexity Low_complexity 1 23 0 1711 211 86 25 chr4 109817801 109818314 -92510033 + Charlie1 DNA MER1_type 2 545 -2216 4788 107 0 0 chr4 109818326 109819368 -92508979 - L1PA8A LINE L1 0 6131 5188 7711 150 17 5 chr4 109819371 109820699 -92507648 + L1P LINE L1 3679 5023 -1123 587 250 57 17 chr4 109821031 109821207 -92507140 - MER5A DNA MER1_type -6 183 1 763 238 72 0 chr4 109821217 109821398 -92506949 - MER20 DNA MER1_type -19 200 7 582 164 18 0 chr4 109821938 109822048 -92506299 + MER2 DNA MER2_type 128 239 -106 1074 157 94 11 chr4 109822322 109822513 -92505834 - MER61C LTR ERV1 0 434 228 7132 140 15 26 chr4 109822522 109823373 -92504974 + THE1C-int LTR MaLR 427 1263 -317 2191 131 0 0 chr4 109823373 109823678 -92504669 + AluSx SINE Alu 7 311 -1 7132 140 15 26 chr4 109823678 109823993 -92504354 + THE1C-int LTR MaLR 1263 1580 0 1639 145 61 90 chr4 109823993 109824334 -92504013 + THE1C LTR MaLR 1 332 -43 1896 139 7 4 chr4 109824334 109824635 -92503712 - AluSq SINE Alu 0 302 1 1639 145 61 90 chr4 109824635 109824671 -92503676 + THE1C LTR MaLR 332 368 -7 333 210 154 91 chr4 109825468 109825611 -92502736 + MER110 LTR ERV1 317 468 -23 396 296 28 81 chr4 109825652 109825674 -92502673 - L2 LINE L2 -493 2821 2799 2018 171 43 3 chr4 109825674 109826049 -92502298 + MLT1B LTR MaLR 1 390 0 396 296 28 81 chr4 109826049 109826310 -92502037 - L2 LINE L2 -515 2799 2553 630 264 102 27 chr4 109826401 109826781 -92501566 - MLT1J LTR MaLR -7 504 57 2098 97 14 4 chr4 109826781 109827060 -92501287 - AluY SINE Alu -8 303 22 630 264 102 27 chr4 109827060 109827096 -92501251 - MLT1J LTR MaLR -454 57 25 1237 134 14 37 chr4 109827351 109827566 -92500781 - THE1B LTR MaLR 0 364 155 1730 211 86 29 chr4 109827566 109828112 -92500235 - LTR14C LTR ERVK 0 587 11 984 113 99 7 chr4 109828115 109828266 -92500081 - THE1B LTR MaLR -199 165 1 6281 73 0 2 chr4 109828272 109829069 -92499278 - THE1B-int LTR MaLR -5 1575 781 303 351 45 0 chr4 109829279 109829413 -92498934 - L2 LINE L2 0 3272 3133 24 85 0 0 chr4 109829709 109829768 -92498579 + AT_rich Low_complexity Low_complexity 1 59 0 186 350 17 0 chr4 109829875 109829935 -92498412 + MIR SINE MIR 81 141 -67 405 59 0 0 chr4 109830156 109830207 -92498140 + THE1C LTR MaLR 1 51 -324 4926 42 2 0 chr4 109830817 109831407 -92496940 + LTR10C LTR ERV1 1 591 0 234 276 10 41 chr4 109831460 109831558 -92496789 + GA-rich Low_complexity Low_complexity 2 96 0 1154 262 77 6 chr4 109831687 109832053 -92496294 + MER63B DNA MER1_type 43 434 -2 237 167 109 132 chr4 109832224 109832398 -92495949 + HAL1 LINE L1 61 230 -2277 387 0 0 0 chr4 109832502 109832545 -92495802 + (TG)n Simple_repeat Simple_repeat 1 43 0 257 351 106 45 chr4 109832950 109833199 -92495148 - L2 LINE L2 -252 3020 2757 220 262 16 0 chr4 109833989 109834050 -92494297 + (TG)n Simple_repeat Simple_repeat 2 63 0 233 73 122 0 chr4 109835028 109835069 -92493278 - MER53 DNA DNA -8 181 136 277 338 77 18 chr4 109835424 109835646 -92492701 + MIR SINE MIR 26 260 -2 271 198 62 49 chr4 109836828 109836909 -92491438 + MLT1K LTR MaLR 484 565 -23 1608 220 34 34 chr4 109837386 109837799 -92490548 + MLT1C LTR MaLR 55 467 0 281 322 11 11 chr4 109838453 109838543 -92489804 + L2 LINE L2 3183 3272 0 1654 137 88 18 chr4 109839020 109839304 -92489043 + AluSx SINE Alu 1 304 -8 294 206 0 62 chr4 109840138 109840235 -92488112 + L1P LINE L1 4283 4373 -1773 278 321 45 18 chr4 109840811 109840923 -92487424 - MER5A DNA MER1_type -24 165 51 * 321 357 29 7 chr4 109840823 109840963 -92487384 + MER5A DNA MER1_type 47 189 0 350 297 92 20 chr4 109841572 109841767 -92486580 - MLT1L LTR MaLR -47 568 360 222 91 0 0 chr4 109841815 109841848 -92486499 + (T)n Simple_repeat Simple_repeat 1 33 0 801 339 11 8 chr4 109842281 109842541 -92485806 + MIR SINE MIR 2 262 0 21 0 0 0 chr4 109842863 109842884 -92485463 + AT_rich Low_complexity Low_complexity 1 21 0 375 350 37 18 chr4 109844685 109844848 -92483499 - MIR SINE MIR -51 211 46 340 239 14 0 chr4 109845084 109845155 -92483192 - L2 LINE L2 0 3313 3242 197 123 62 0 chr4 109845155 109845220 -92483127 + (TA)n Simple_repeat Simple_repeat 2 70 0 492 356 61 26 chr4 109845220 109845532 -92482815 - L2 LINE L2 -67 3246 2924 192 40 0 0 chr4 109845907 109845932 -92482415 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 510 320 69 27 chr4 109846668 109847074 -92481273 - MARNA DNA Mariner -89 497 75 30 0 0 0 chr4 109847319 109847349 -92480998 + AT_rich Low_complexity Low_complexity 1 30 0 519 248 113 100 chr4 109847766 109848218 -92480129 - LTR16B LTR ERVL -6 458 1 23 86 0 0 chr4 109848794 109848852 -92479495 + AT_rich Low_complexity Low_complexity 1 58 0 2425 65 0 0 chr4 109850275 109850568 -92477779 - AluY SINE Alu -15 296 4 729 160 32 0 chr4 109850754 109850879 -92477468 - FLAM_C SINE Alu -12 131 3 2573 40 0 0 chr4 109850890 109851191 -92477156 - AluY SINE Alu -10 301 1 591 338 33 17 chr4 109851376 109851616 -92476731 - MIR SINE MIR 0 262 19 231 246 164 52 chr4 109851899 109852033 -92476314 - MER5A DNA MER1_type -1 188 40 724 219 110 9 chr4 109853434 109853653 -92474694 - L1MD3 LINE L1 -935 7060 6820 2464 58 3 3 chr4 109854592 109854902 -92473445 - AluY SINE Alu -1 310 1 360 247 0 0 chr4 109854943 109855016 -92473331 + L2 LINE L2 3241 3313 0 189 206 64 170 chr4 109855720 109855861 -92472486 - MIR SINE MIR -63 145 20 661 104 55 0 chr4 109855928 109856133 -92472214 + (TA)n Simple_repeat Simple_repeat 1 216 0 1740 149 3 62 chr4 109856736 109857057 -92471290 + AluJo SINE Alu 1 302 -10 1082 139 24 32 chr4 109857142 109857278 -92471069 - L1MA7 LINE L1 -258 6033 5897 273 75 0 0 chr4 109857278 109857318 -92471029 + (TA)n Simple_repeat Simple_repeat 1 40 0 1082 139 24 32 chr4 109857318 109857478 -92470869 - L1MA7 LINE L1 -394 5897 5616 1235 87 52 35 chr4 109857504 109857733 -92470614 + L1MA7 LINE L1 6059 6291 0 203 136 45 0 chr4 109857897 109857941 -92470406 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 387 330 82 24 chr4 109859004 109859210 -92469137 - L3b LINE CR1 -264 1319 1102 181 233 150 0 chr4 109859777 109859837 -92468510 + L2 LINE L2 3204 3272 0 290 154 37 154 chr4 109860359 109860495 -92467852 + MIR SINE MIR 118 237 -25 651 131 8 15 chr4 109860746 109860876 -92467471 + (TTCC)n Simple_repeat Simple_repeat 1 129 0 277 290 0 9 chr4 109860932 109861039 -92467308 + (TCTA)n Simple_repeat Simple_repeat 2 107 0 1460 176 58 77 chr4 109861042 109861406 -92466941 - MLT1A2 LTR MaLR -11 363 7 2022 165 3 6 chr4 109861910 109862262 -92466085 + Tigger3b DNA MER2_type 15 365 -866 920 120 0 0 chr4 109862262 109862387 -92465960 + AluSq/x SINE Alu 1 125 -187 2238 145 55 30 chr4 109862413 109862572 -92465775 + Tigger3b DNA MER2_type 350 503 -2525 396 59 0 0 chr4 109862572 109862623 -92465724 + (TG)n Simple_repeat Simple_repeat 2 52 0 1634 177 3 7 chr4 109862623 109862906 -92465441 - AluJb SINE Alu -27 285 4 2238 145 55 30 chr4 109862906 109863211 -92465136 + Tigger3b DNA MER2_type 502 827 -404 660 173 62 53 chr4 109863211 109863423 -92464924 - LTR45B LTR ERV1 0 609 344 2338 158 33 5 chr4 109863726 109864124 -92464223 + Tigger3b DNA MER2_type 822 1230 -1 510 251 102 12 chr4 109864582 109864749 -92463598 + MIR SINE MIR 51 232 -30 794 257 57 12 chr4 109865539 109865784 -92462563 + MIR SINE MIR 3 258 -4 26 50 0 0 chr4 109867212 109867252 -92461095 + AT_rich Low_complexity Low_complexity 1 40 0 715 262 35 15 chr4 109867345 109867547 -92460800 + MIR SINE MIR 32 237 -25 276 263 92 72 chr4 109868559 109868711 -92459636 - L2 LINE L2 -9 3304 3150 29 70 0 0 chr4 109868739 109868796 -92459551 + AT_rich Low_complexity Low_complexity 1 57 0 406 244 158 8 chr4 109868991 109869118 -92459229 - L2 LINE L2 -1 3312 3167 1917 297 174 53 chr4 109869412 109870953 -92457394 + L2 LINE L2 1348 3076 -237 647 258 21 58 chr4 109871083 109871323 -92457024 - L2 LINE L2 0 3313 3083 185 283 17 17 chr4 109871479 109871539 -92456808 - MIR SINE MIR -64 144 85 508 265 81 50 chr4 109871611 109871894 -92456453 - MER97c DNA MER1_type? 0 1090 799 1234 211 66 76 chr4 109871903 109872297 -92456050 + MLT1B LTR MaLR 1 390 0 2203 232 26 32 chr4 109872615 109872733 -92455614 - MER97b DNA MER1_type? -448 605 488 4383 118 14 18 chr4 109872733 109873452 -92454895 - L1PA13 LINE L1 0 6163 5448 2203 232 26 32 chr4 109873452 109873902 -92454445 - MER97b DNA MER1_type? -565 488 40 5407 133 9 9 chr4 109874123 109875587 -92452760 + L1PA16 LINE L1 4692 6157 -9 2151 77 34 27 chr4 109877005 109877302 -92451045 - AluY SINE Alu -12 299 1 2821 107 18 5 chr4 109877713 109878153 -92450194 + L1MA3 LINE L1 5726 6171 -134 9662 146 20 32 chr4 109878153 109878959 -92449388 - Tigger1 DNA MER2_type -764 1654 839 2007 140 0 3 chr4 109878959 109879259 -92449088 - AluSx SINE Alu -13 299 1 9662 146 20 32 chr4 109879259 109879975 -92448372 - Tigger1 DNA MER2_type -1579 839 116 279 0 0 0 chr4 109879975 109880006 -92448341 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1548 57 0 0 chr4 109880006 109880198 -92448149 - L1PA3 LINE L1 -18 6137 5946 9662 146 20 32 chr4 109880198 109880348 -92447999 - Tigger1 DNA MER2_type -2300 118 1 2840 29 12 0 chr4 109881119 109881460 -92446887 + L1PA3 LINE L1 5811 6155 0 936 330 126 9 chr4 109882926 109883378 -92444969 - L2 LINE L2 0 3313 2809 466 313 44 16 chr4 109883406 109883588 -92444759 + L2 LINE L2 1057 1243 -2071 * 2018 302 119 22 chr4 109883582 109884467 -92443880 - L2 LINE L2 -932 2382 1383 4661 160 68 8 chr4 109884467 109885319 -92443028 - MER4D LTR ERV1 0 903 1 2018 302 119 22 chr4 109885319 109885458 -92442889 - L2 LINE L2 -1931 1383 1259 314 376 20 40 chr4 109885481 109885731 -92442616 - L2 LINE L2 -2690 624 380 2197 93 0 0 chr4 109885766 109886055 -92442292 - AluY SINE Alu 0 311 23 443 207 0 63 chr4 109886388 109886499 -92441848 + L1M1 LINE L1 28 131 -7434 192 393 54 9 chr4 109886527 109886639 -92441708 + L2 LINE L2 3156 3272 0 212 139 47 0 chr4 109886717 109886760 -92441587 + (TA)n Simple_repeat Simple_repeat 1 45 0 347 332 109 36 chr4 109886936 109887210 -92441137 + L2 LINE L2 1697 1990 -1324 434 329 65 56 chr4 109888362 109888794 -92439553 - L2 LINE L2 -412 2902 2467 292 378 33 65 chr4 109888793 109889100 -92439247 + L2 LINE L2 2969 3265 -7 * 1494 205 87 6 chr4 109889821 109890143 -92438204 + MER7A DNA MER2_type 1 346 0 337 176 15 44 chr4 109890782 109890850 -92437497 - L1MC/D LINE L1 -2235 5550 5485 2277 190 89 26 chr4 109890865 109891523 -92436824 - Tigger7 DNA MER2_type -21 2566 1 1138 233 42 42 chr4 109891523 109892046 -92436301 - L1MC/D LINE L1 -762 5384 4969 311 266 110 40 chr4 109892047 109892220 -92436127 - L2 LINE L2 -855 2459 2275 549 196 38 38 chr4 109892499 109892632 -92435715 + AluJo SINE Alu 122 254 -58 228 217 0 22 chr4 109892701 109892747 -92435600 + L2 LINE L2 3210 3254 -18 678 349 24 7 chr4 109893261 109893556 -92434791 + L2 LINE L2 2185 2484 -830 809 251 80 70 chr4 109893650 109894065 -92434282 - MLT1J1 LTR MaLR -27 419 1 190 319 11 33 chr4 109894127 109894218 -92434129 + L2 LINE L2 2914 3002 -270 368 299 120 8 chr4 109894298 109894415 -92433932 + L2 LINE L2 3134 3263 -9 2659 163 13 2 chr4 109894521 109894999 -92433348 - MER31A LTR ERV1 0 485 3 239 298 26 61 chr4 109895335 109895449 -92432898 - MIR SINE MIR -122 140 31 420 202 12 0 chr4 109896605 109896689 -92431658 + MER67C LTR ERV1 1 85 -429 1375 217 54 52 chr4 109896734 109897215 -92431132 + MER67C LTR ERV1 68 514 0 376 249 53 112 chr4 109897487 109897684 -92430663 + MIR SINE MIR 45 234 -28 21 57 0 0 chr4 109897785 109897820 -92430527 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr4 109898013 109898040 -92430307 + AT_rich Low_complexity Low_complexity 1 27 0 270 193 398 0 chr4 109898546 109898634 -92429713 + MLT2B1 LTR ERVL 398 520 0 318 123 0 0 chr4 109899352 109899409 -92428938 + (TA)n Simple_repeat Simple_repeat 1 57 0 252 191 22 11 chr4 109899412 109899501 -92428846 - L1MC4 LINE L1 -1339 6703 6614 298 275 47 34 chr4 109899649 109899798 -92428549 + MLT1L LTR MaLR 354 504 -111 352 271 43 29 chr4 109902326 109902466 -92425881 + L1ME LINE L1 5596 5737 -384 27247 100 10 21 chr4 109902946 109909445 -92418902 + L1PA7 LINE L1 5 6490 0 2147 95 3 3 chr4 109910982 109911290 -92417057 + AluY SINE Alu 1 308 0 1277 183 28 17 chr4 109912082 109912489 -92415858 + LTR32 LTR ERVL 27 466 -5 2566 100 17 8 chr4 109914307 109914668 -92413679 + THE1B LTR MaLR 1 364 0 608 215 69 0 chr4 109917730 109917874 -92410473 - MER20 DNA MER1_type 0 219 66 1820 194 11 11 chr4 109918436 109918797 -92409550 + MLT1A1 LTR MaLR 5 365 0 1378 239 69 9 chr4 109918909 109919256 -92409091 + MLT1F LTR MaLR 175 542 0 2722 84 3 0 chr4 109919929 109920274 -92408073 + THE1A LTR MaLR 1 346 -9 11866 86 2 18 chr4 109920274 109921863 -92406484 + THE1A-int LTR MaLR 16 1580 0 2612 99 0 0 chr4 109921863 109922218 -92406129 + THE1A LTR MaLR 1 355 0 261 295 13 26 chr4 109923063 109923141 -92405206 + MLT1K LTR MaLR 327 403 -185 * 352 141 66 99 chr4 109923137 109923258 -92405089 + MLT1F LTR MaLR 17 133 -460 244 220 20 0 chr4 109923281 109923331 -92405016 + CT-rich Low_complexity Low_complexity 1 51 0 394 217 301 29 chr4 109923337 109923348 -92404999 + MLT1F LTR MaLR 163 170 -372 231 36 0 0 chr4 109923348 109923376 -92404971 + (TTCTCC)n Simple_repeat Simple_repeat 1 28 0 394 217 301 29 chr4 109923376 109923636 -92404711 + MLT1F LTR MaLR 170 508 -34 318 245 216 0 chr4 109924498 109924637 -92403710 + L1ME LINE L1 717 885 -5185 22 70 0 0 chr4 109925954 109925997 -92402350 + AT_rich Low_complexity Low_complexity 1 43 0 2299 145 55 2 chr4 109926776 109927191 -92401156 + L1PA16 LINE L1 5728 6164 -2 1040 193 84 0 chr4 109927328 109927541 -92400806 + LOR1b LTR ERV1 1 231 -230 1680 237 57 3 chr4 109927545 109927933 -92400414 - MLT2B1 LTR ERVL -94 426 18 2504 135 5 10 chr4 109927933 109928340 -92400007 - L1PA16 LINE L1 -313 5853 5449 863 249 54 23 chr4 109928340 109928561 -92399786 - MER97c DNA MER1_type? -598 492 265 894 60 22 8 chr4 109928693 109928727 -92399620 + (TTCC)n Simple_repeat Simple_repeat 1 170 0 894 60 22 8 chr4 109928727 109928861 -92399486 + (TTCC)n Simple_repeat Simple_repeat 4 139 0 2279 202 49 34 chr4 109928897 109929611 -92398736 - L1M3 LINE L1 -694 5489 4767 267 267 63 5 chr4 109929669 109929875 -92398472 - L1M3 LINE L1 -2792 3354 3137 1954 211 49 5 chr4 109931024 109931432 -92396915 - MSTB LTR MaLR 0 426 1 219 157 0 59 chr4 109932282 109932333 -92396014 + (CATATA)n Simple_repeat Simple_repeat 1 48 0 7905 37 0 3 chr4 109932711 109933705 -92394642 - L1PA4 LINE L1 -2634 3512 2522 15303 41 6 0 chr4 109933705 109936352 -92391995 + L1PA4 LINE L1 3499 6154 -1 23 33 0 0 chr4 109938288 109938318 -92390029 + AT_rich Low_complexity Low_complexity 1 30 0 300 256 12 119 chr4 109939107 109939267 -92389080 + MIR SINE MIR 70 212 -50 2492 74 0 3 chr4 109939894 109940206 -92388141 + AluY SINE Alu 1 311 0 500 379 24 16 chr4 109940271 109940519 -92387828 + MIR SINE MIR 8 257 -5 1910 217 84 135 chr4 109941176 109941709 -92386638 - L1MC3 LINE L1 -10 7807 7248 421 265 7 52 chr4 109941709 109941845 -92386502 - MLT1F1 LTR MaLR -437 130 1 1910 217 84 135 chr4 109941845 109942774 -92385573 - L1MC3 LINE L1 -569 7248 6273 180 0 0 0 chr4 109942774 109942794 -92385553 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1910 217 84 135 chr4 109942794 109942883 -92385464 - L1MC3 LINE L1 -1544 6273 6181 10951 34 0 1 chr4 109942883 109944969 -92383378 - L1PA4 LINE L1 0 6155 4068 1910 217 84 135 chr4 109944969 109945832 -92382515 - L1MC3 LINE L1 -1636 6181 5489 770 164 46 82 chr4 109945853 109946072 -92382275 - Charlie1 DNA MER1_type -1848 913 703 707 122 8 16 chr4 109946107 109946230 -92382117 - L1P LINE L1 -999 5147 5026 568 244 23 0 chr4 109946330 109946461 -92381886 - MLT2B1 LTR ERVL -369 151 18 15013 220 32 13 chr4 109946461 109950765 -92377582 - L1PA15 LINE L1 -312 6504 2069 2132 137 0 19 chr4 109950765 109951079 -92377268 - AluSx SINE Alu -2 310 3 15013 220 32 13 chr4 109951079 109951653 -92376694 - L1PA15 LINE L1 -4747 2069 1507 2314 311 48 21 chr4 109951735 109952582 -92375765 - L1PA15 LINE L1 -5916 871 2 28 29 0 0 chr4 109952833 109952868 -92375479 + AT_rich Low_complexity Low_complexity 1 35 0 279 167 0 0 chr4 109953453 109953495 -92374852 + Alu SINE Alu 1 42 -258 234 349 0 0 chr4 109953762 109953845 -92374502 + (CATATA)n Simple_repeat Simple_repeat 4 86 0 291 271 0 0 chr4 109953846 109953916 -92374431 + L2 LINE L2 3244 3313 0 1920 132 35 0 chr4 109954311 109954598 -92373749 - AluSx SINE Alu -15 297 1 351 163 11 22 chr4 109954637 109954729 -92373618 + C-rich Low_complexity Low_complexity 3 93 0 3263 274 48 8 chr4 109955105 109956404 -92371943 - L1ME LINE L1 -1959 4121 2772 1118 258 78 63 chr4 109956446 109957288 -92371059 - L1ME LINE L1 -3418 2662 1832 1585 301 78 33 chr4 109957377 109958459 -92369888 - L1ME LINE L1 -4981 1089 6 243 202 36 0 chr4 109958577 109958661 -92369686 + (TA)n Simple_repeat Simple_repeat 2 88 0 354 276 29 6 chr4 109958716 109958890 -92369457 + (TA)n Simple_repeat Simple_repeat 1 178 0 972 294 62 28 chr4 109958974 109959572 -92368775 - L1M4 LINE L1 -2019 4127 3510 2213 51 0 7 chr4 109959607 109959913 -92368434 + AluY SINE Alu 10 313 0 3306 181 18 24 chr4 109959973 109960645 -92367702 - L1MB3 LINE L1 -40 6143 5476 489 179 24 8 chr4 109960645 109960768 -92367579 + CT-rich Low_complexity Low_complexity 4 128 0 226 256 244 0 chr4 109960915 109960993 -92367354 - MER5A DNA MER1_type -83 106 10 29 28 0 0 chr4 109961155 109961191 -92367156 + AT_rich Low_complexity Low_complexity 1 36 0 959 98 148 44 chr4 109961256 109961361 -92366986 + MER30 DNA MER1_type 1 94 -136 324 0 0 0 chr4 109961361 109961397 -92366950 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 959 98 148 44 chr4 109961397 109961474 -92366873 + MER30 DNA MER1_type 94 202 -28 756 112 48 37 chr4 109961556 109961744 -92366603 - L1MA5 LINE L1 -2 6298 6109 256 207 0 17 chr4 110011848 110011906 -92316441 + L1M1 LINE L1 672 728 -6837 13099 164 21 9 chr4 110011924 110014302 -92314045 + L1M1 LINE L1 700 3105 -4460 290 184 118 0 chr4 110014302 110014374 -92313973 + MER4A LTR ERV1 1 81 -583 2235 116 27 17 chr4 110014374 110014780 -92313567 + LTR7 LTR ERV1 1 410 -40 4662 186 87 11 chr4 110014887 110016056 -92312291 - L1PBa LINE L1 -3927 2936 1679 5790 193 10 14 chr4 110016060 110017515 -92310832 - L1M2 LINE L1 -5146 1717 660 771 282 8 0 chr4 110017588 110017850 -92310497 - L1PBa LINE L1 -5685 1178 915 2192 183 47 6 chr4 110017854 110018340 -92310007 - L1P LINE L1 -796 5350 4845 1588 210 12 0 chr4 110018340 110018683 -92309664 + L1P LINE L1 4518 4864 -1282 21 36 0 0 chr4 110018898 110018926 -92309421 + AT_rich Low_complexity Low_complexity 1 28 0 4970 23 2 0 chr4 110019063 110019674 -92308673 - L1PA4 LINE L1 -170 5985 5374 235 368 74 21 chr4 110019677 110019919 -92308428 - MIR SINE MIR -5 257 3 537 238 17 123 chr4 110019997 110020405 -92307942 - L1M4 LINE L1 -2136 4010 3646 2152 56 45 0 chr4 110020606 110020874 -92307473 - AluY SINE Alu -11 300 21 568 94 435 0 chr4 110020964 110021102 -92307245 - THE1C LTR MaLR -177 198 1 375 41 0 0 chr4 110021169 110021218 -92307129 + (TG)n Simple_repeat Simple_repeat 2 50 0 919 244 97 38 chr4 110021774 110022174 -92306173 + L1MA4 LINE L1 5842 6265 -35 23 0 0 0 chr4 110023357 110023380 -92304967 + AT_rich Low_complexity Low_complexity 1 23 0 366 23 0 0 chr4 110023398 110023441 -92304906 + (TG)n Simple_repeat Simple_repeat 2 44 0 31 0 0 0 chr4 110024255 110024286 -92304061 + AT_rich Low_complexity Low_complexity 1 31 0 1850 168 0 7 chr4 110024291 110024577 -92303770 - AluJo SINE Alu -24 288 5 279 0 0 0 chr4 110024640 110024671 -92303676 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1974 127 18 0 chr4 110024673 110024949 -92303398 - AluSx SINE Alu -31 281 1 27 62 0 0 chr4 110026540 110026588 -92301759 + AT_rich Low_complexity Low_complexity 1 48 0 2085 127 39 23 chr4 110026617 110027002 -92301345 - L1MA2 LINE L1 0 6304 5914 3437 102 0 6 chr4 110027002 110027522 -92300825 + L1MA2 LINE L1 5388 5904 -401 23 0 0 0 chr4 110027541 110027564 -92300783 + AT_rich Low_complexity Low_complexity 1 23 0 207 156 0 0 chr4 110028071 110028103 -92300244 + (TG)n Simple_repeat Simple_repeat 2 33 0 1105 163 29 12 chr4 110029033 110029278 -92299069 - L1MA4 LINE L1 -12 6288 6040 968 168 66 10 chr4 110029820 110030016 -92298331 + L1MC1 LINE L1 6122 6328 -5 13989 113 12 25 chr4 110031294 110034116 -92294231 + HERVH LTR ERV1 3 2995 -4718 5383 109 5 2 chr4 110034095 110034947 -92293400 + HERVH LTR ERV1 3140 3993 -3720 * 2918 129 7 2 chr4 110034949 110035560 -92292787 + HERVH LTR ERV1 4488 5149 -2564 1388 116 19 0 chr4 110035561 110035777 -92292570 + HERVH LTR ERV1 5600 5819 -1894 2230 93 45 24 chr4 110035777 110036154 -92292193 + HERVH LTR ERV1 7324 7708 -5 2773 65 44 21 chr4 110036159 110036591 -92291756 + LTR7 LTR ERV1 1 442 -8 1634 146 3 72 chr4 110036622 110036993 -92291354 + MER4A LTR ERV1 261 664 0 2223 111 150 64 chr4 110036996 110037510 -92290837 + MER4A-int LTR ERV1 1 558 -6040 1296 77 83 68 chr4 110037532 110037858 -92290489 + MER4A-int LTR ERV1 504 749 -4266 1178 101 19 29 chr4 110037884 110038093 -92290254 + MER4A-int LTR ERV1 1804 2010 -4588 2912 198 18 57 chr4 110038093 110038812 -92289535 - LTR8 LTR ERV1 0 691 1 1076 87 18 36 chr4 110038812 110039031 -92289316 + MER4-int LTR ERV1 2737 2951 -3647 313 248 234 0 chr4 110040348 110040489 -92287858 + L2 LINE L2 3103 3276 -37 4680 181 22 0 chr4 110041236 110042162 -92286185 + L1MC1 LINE L1 5372 6317 -16 600 95 0 0 chr4 110042314 110042398 -92285949 - L1PA5 LINE L1 -8 6146 6063 29 0 0 0 chr4 110042713 110042742 -92285605 + AT_rich Low_complexity Low_complexity 1 29 0 541 301 122 38 chr4 110043025 110043549 -92284798 + L1M4 LINE L1 8 575 -5967 43 20 0 0 chr4 110043557 110043607 -92284740 + AT_rich Low_complexity Low_complexity 1 50 0 301 307 11 0 chr4 110043607 110043695 -92284652 - L1MC4 LINE L1 -1339 6703 6615 1987 221 108 19 chr4 110043707 110044058 -92284289 + L1M4 LINE L1 602 921 -5621 2077 131 3 26 chr4 110044058 110044363 -92283984 + AluSx SINE Alu 1 298 -14 1987 221 108 19 chr4 110044363 110044625 -92283722 + L1M4 LINE L1 921 1269 -5273 1736 157 64 0 chr4 110044632 110044977 -92283370 + THE1C LTR MaLR 9 375 0 1420 244 47 20 chr4 110045012 110045560 -92282787 + L1M4 LINE L1 1279 1841 -4805 2803 191 13 5 chr4 110045565 110046166 -92282181 + L1P LINE L1 3442 4047 -2099 2023 222 43 41 chr4 110046165 110046357 -92281990 - L1 LINE L1 -2507 4660 4470 * 1961 96 72 10 chr4 110046357 110046649 -92281698 - AluSx SINE Alu 0 312 3 2023 222 43 41 chr4 110046649 110047214 -92281133 - L1 LINE L1 -2697 4470 3901 260 325 47 57 chr4 110047221 110047433 -92280914 - L1 LINE L1 -5296 1872 286 839 277 6 15 chr4 110047719 110048055 -92280292 - L1M4 LINE L1 -3515 2631 2299 257 288 195 0 chr4 110049766 110049884 -92278463 + MIR SINE MIR 117 257 -5 2324 36 7 0 chr4 110049993 110050302 -92278045 + AluY SINE Alu 3 313 0 238 164 68 0 chr4 110050541 110050614 -92277733 + (TCTA)n Simple_repeat Simple_repeat 2 79 0 1415 189 22 19 chr4 110051389 110051706 -92276641 + L1MA6 LINE L1 5979 6296 -4 206 176 20 0 chr4 110052167 110052218 -92276129 + GA-rich Low_complexity Low_complexity 2 53 0 938 280 6 3 chr4 110052369 110052715 -92275632 - L1 LINE L1 -3035 3111 2765 * 1021 123 5 50 chr4 110052710 110052929 -92275418 + L1P4 LINE L1 5276 5484 -682 1099 209 37 0 chr4 110052930 110053174 -92275173 + L1M1 LINE L1 13 265 -7300 7310 117 79 106 chr4 110053189 110054932 -92273415 + pTR5 LTR ERV1 743 2438 0 1111 264 19 23 chr4 110054936 110055243 -92273104 + L1M1 LINE L1 280 585 -6980 1702 126 50 26 chr4 110056367 110056893 -92271454 + MER51A LTR ERV1 2 618 -16 348 104 119 0 chr4 110056923 110056990 -92271357 + MER51A-int LTR ERV1 1 75 -7741 887 232 3 12 chr4 110057030 110057402 -92270945 + MER51A-int LTR ERV1 56 465 -3820 1249 183 18 46 chr4 110057722 110058007 -92270340 + MER51A-int LTR ERV1 615 891 -6925 268 270 0 0 chr4 110058103 110058166 -92270181 + MER51A-int LTR ERV1 2012 2074 -6552 * 4858 121 90 15 chr4 110058138 110059018 -92269329 + MER51A-int LTR ERV1 455 1400 -6720 628 146 46 0 chr4 110059022 110059152 -92269195 + MER51A-int LTR ERV1 3395 3530 -2416 * 1064 320 6 7 chr4 110059147 110059654 -92268693 + MER51A-int LTR ERV1 5387 5784 -1972 287 225 62 70 chr4 110059773 110059902 -92268445 + MER51A-int LTR ERV1 4633 4760 -1916 327 179 0 0 chr4 110060152 110060208 -92268139 + MER51A-int LTR ERV1 7487 7542 -274 287 279 27 18 chr4 110060367 110060478 -92267869 + MER51A-int LTR ERV1 6665 6776 -1623 2233 119 14 8 chr4 110060871 110061224 -92267123 + THE1A LTR MaLR 1 355 0 11202 102 13 2 chr4 110061224 110062787 -92265560 + THE1A-int LTR MaLR 1 1580 0 2091 126 25 34 chr4 110062795 110063153 -92265194 + THE1A LTR MaLR 1 355 0 1562 291 53 31 chr4 110063235 110064120 -92264227 + MER51A-int LTR ERV1 5860 7816 0 1925 134 29 54 chr4 110064120 110064693 -92263654 + MER51A LTR ERV1 1 634 0 271 352 129 24 chr4 110066343 110066553 -92261794 - L2 LINE L2 -566 2748 2517 193 397 64 28 chr4 110067293 110067434 -92260913 + L2 LINE L2 2915 3060 -212 24 32 0 0 chr4 110068399 110068430 -92259917 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr4 110068692 110068723 -92259624 + AT_rich Low_complexity Low_complexity 1 31 0 189 361 0 0 chr4 110069862 110069923 -92258424 + L2 LINE L2 3204 3264 -8 1286 255 89 5 chr4 110070839 110071219 -92257128 - MLT2B1 LTR ERVL -108 412 1 1864 257 144 58 chr4 110071240 110072157 -92256190 - MLT-int LTR MaLR -64 1671 601 2368 80 0 16 chr4 110072893 110073207 -92255140 - AluY SINE Alu -2 309 1 14921 118 55 35 chr4 110073213 110074318 -92254029 + MER4A-int LTR ERV1 2951 4032 -2566 3571 108 6 4 chr4 110074318 110074828 -92253519 - MER9 LTR ERVK 0 511 1 14921 118 55 35 chr4 110074828 110076719 -92251628 + MER4A-int LTR ERV1 4032 6596 -2 501 144 89 0 chr4 110076727 110076817 -92251530 + MER4A LTR ERV1 1 98 -566 362 205 7 38 chr4 110076817 110076963 -92251384 + MER4A LTR ERV1 261 460 -204 * 1480 146 0 0 chr4 110076959 110077172 -92251175 + MER4B LTR ERV1 381 593 -17 2436 155 33 14 chr4 110077188 110077703 -92250644 + L1MA1 LINE L1 3102 3626 -3939 494 156 73 0 chr4 110077708 110077794 -92250553 + AluSq/x SINE Alu 31 126 -186 243 0 0 0 chr4 110077794 110077821 -92250526 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 10788 165 116 31 chr4 110077845 110080276 -92248071 + L1MA1 LINE L1 3613 5836 -1885 1672 88 0 13 chr4 110080276 110080502 -92247845 + AluY SINE Alu 85 307 -4 10788 165 116 31 chr4 110080502 110080761 -92247586 + L1MA1 LINE L1 5836 6072 -1649 2186 140 46 3 chr4 110080761 110081110 -92247237 - THE1B LTR MaLR 0 364 1 10788 165 116 31 chr4 110081110 110082149 -92246198 + L1MA1 LINE L1 6072 7649 -72 1946 160 26 21 chr4 110082149 110082531 -92245816 + L1MC1 LINE L1 5945 6328 -5 3608 139 14 0 chr4 110082546 110083123 -92245224 + L1PA16 LINE L1 5473 6057 -109 23 0 0 0 chr4 110083288 110083311 -92245036 + AT_rich Low_complexity Low_complexity 1 23 0 2049 111 14 0 chr4 110083535 110083847 -92244500 + AluY SINE Alu 1 316 0 9399 215 46 30 chr4 110084836 110087642 -92240705 - L1MC1 LINE L1 -6 6607 3849 3028 145 26 2 chr4 110087642 110088145 -92240202 - L1PA16 LINE L1 -9 6157 5643 9399 215 46 30 chr4 110088145 110090077 -92238270 - L1MC1 LINE L1 -2764 3849 1950 1698 177 31 0 chr4 110090077 110090365 -92237982 - AluJb SINE Alu -15 297 1 9399 215 46 30 chr4 110090365 110090617 -92237730 - L1MC1 LINE L1 -4663 1950 1704 285 29 0 0 chr4 110090617 110090651 -92237696 + (TG)n Simple_repeat Simple_repeat 1 34 0 9399 215 46 30 chr4 110090651 110092048 -92236299 - L1MC1 LINE L1 -4909 1704 18 334 132 15 15 chr4 110092557 110092625 -92235722 + CT-rich Low_complexity Low_complexity 1 68 0 1292 209 19 32 chr4 110092625 110092941 -92235406 - AluSx SINE Alu 0 312 1 10825 194 91 17 chr4 110093266 110094341 -92234006 + L1PB3 LINE L1 2272 3266 -2888 2460 48 0 3 chr4 110094341 110094635 -92233712 + AluY SINE Alu 1 293 -18 10825 194 91 17 chr4 110094635 110096559 -92231788 + L1PB3 LINE L1 3266 5587 -567 2272 121 22 25 chr4 110096559 110096924 -92231423 - THE1B LTR MaLR 0 364 1 10825 194 91 17 chr4 110096924 110097537 -92230810 + L1PB3 LINE L1 5587 6153 -1 21 36 0 0 chr4 110097801 110097829 -92230518 + AT_rich Low_complexity Low_complexity 1 28 0 2114 119 0 0 chr4 110098030 110098324 -92230023 + AluSc SINE Alu 1 294 -15 22 70 0 0 chr4 110100378 110100421 -92227926 + AT_rich Low_complexity Low_complexity 1 43 0 2081 87 3 29 chr4 110100485 110100797 -92227550 - AluY SINE Alu -7 304 1 26 30 0 0 chr4 110101341 110101374 -92226973 + AT_rich Low_complexity Low_complexity 1 33 0 724 262 28 73 chr4 110101487 110101773 -92226574 + LTR68 LTR ERV1 1 273 -467 417 305 71 101 chr4 110101790 110102266 -92226081 - L1ME LINE L1 -5580 490 29 21 0 0 0 chr4 110102456 110102477 -92225870 + AT_rich Low_complexity Low_complexity 1 21 0 420 325 126 18 chr4 110103146 110103488 -92224859 - L1M4 LINE L1 -1128 5018 4640 860 275 62 24 chr4 110103569 110104034 -92224313 - L1ME LINE L1 -359 5872 5390 258 259 144 14 chr4 110104314 110104453 -92223894 - L1ME LINE L1 -1191 5024 4868 358 296 53 41 chr4 110104551 110104570 -92223777 - L1M4 LINE L1 -1556 4590 4573 1105 199 20 123 chr4 110104570 110104976 -92223371 + MLT1A1 LTR MaLR 2 365 0 358 296 53 41 chr4 110104976 110105125 -92223222 - L1M4 LINE L1 -1573 4573 4420 1911 120 7 29 chr4 110105127 110105435 -92222912 - AluSq SINE Alu -12 301 1 1980 248 119 46 chr4 110105974 110106107 -92222240 - L1ME LINE L1 -5434 962 840 2162 97 23 0 chr4 110106107 110106407 -92221940 - AluSp SINE Alu -6 307 1 1980 248 119 46 chr4 110106407 110106469 -92221878 - L1ME LINE L1 -5556 840 784 333 0 0 0 chr4 110106469 110106506 -92221841 + (TG)n Simple_repeat Simple_repeat 2 38 0 1980 248 119 46 chr4 110106506 110107175 -92221172 - L1ME LINE L1 -5612 784 34 700 268 84 41 chr4 110107188 110107700 -92220647 - L1M4 LINE L1 -3315 2831 2298 1327 73 0 0 chr4 110108686 110108733 -92219614 - L1PA10 LINE L1 -263 5905 5859 388 214 35 41 chr4 110108733 110108863 -92219484 - L1MC3 LINE L1 -1927 5858 5728 1666 79 31 0 chr4 110108863 110109091 -92219256 + L1PA10 LINE L1 5933 6168 0 388 214 35 41 chr4 110109091 110109105 -92219242 - L1MC3 LINE L1 -2057 5728 5715 180 97 0 0 chr4 110109338 110109369 -92218978 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2104 108 0 0 chr4 110109369 110109647 -92218700 - AluSg SINE Alu -32 278 1 316 53 0 35 chr4 110109906 110109963 -92218384 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 1193 184 130 54 chr4 110109965 110110134 -92218213 - MER2 DNA MER2_type 0 345 190 1509 195 3 24 chr4 110110134 110110432 -92217915 - AluJo SINE Alu -20 292 1 1193 184 130 54 chr4 110110432 110110577 -92217770 - MER2 DNA MER2_type -155 190 7 22 35 0 0 chr4 110110708 110110737 -92217610 + AT_rich Low_complexity Low_complexity 1 29 0 1107 233 104 61 chr4 110111405 110111848 -92216499 - MLT1C LTR MaLR 0 467 6 221 125 62 16 chr4 110111865 110111929 -92216418 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 242 236 0 0 chr4 110111979 110112034 -92216313 + L1ME4a LINE L1 5984 6038 -83 31 58 0 0 chr4 110113214 110113266 -92215081 + AT_rich Low_complexity Low_complexity 1 52 0 24 0 0 0 chr4 110113317 110113341 -92215006 + AT_rich Low_complexity Low_complexity 1 24 0 369 71 125 0 chr4 110113412 110113468 -92214879 + MADE1 DNA Mariner 3 65 -15 204 244 174 23 chr4 110113470 110113556 -92214791 - L2 LINE L2 -50 3263 3165 226 291 114 13 chr4 110113595 110113674 -92214673 - L2 LINE L2 -248 3065 2979 590 294 104 52 chr4 110113683 110113987 -92214360 - L2 LINE L2 -502 2812 2486 1667 207 34 3 chr4 110113987 110114339 -92214008 + MLT1A1 LTR MaLR 3 365 0 590 294 104 52 chr4 110114339 110114381 -92213966 - L2 LINE L2 -828 2486 2448 21 0 0 0 chr4 110114803 110114824 -92213523 + AT_rich Low_complexity Low_complexity 1 21 0 5662 126 14 10 chr4 110115062 110115967 -92212380 - L1MA2 LINE L1 -10 6294 5386 322 268 72 91 chr4 110116023 110116247 -92212100 - L1MC5 LINE L1 -44 7917 7699 1850 135 29 0 chr4 110116247 110116556 -92211791 + AluSx SINE Alu 1 317 0 322 268 72 91 chr4 110116556 110116702 -92211645 - L1MC5 LINE L1 -262 7699 7552 21 0 0 0 chr4 110116849 110116870 -92211477 + AT_rich Low_complexity Low_complexity 1 21 0 3212 263 47 11 chr4 110117601 110118624 -92209723 + L1MEc LINE L1 36 947 -5270 204 288 24 106 chr4 110118671 110118841 -92209506 + MIR SINE MIR 106 261 -1 182 310 50 30 chr4 110118836 110118936 -92209411 + L2 LINE L2 2716 2817 -497 * 1421 191 69 74 chr4 110119058 110119450 -92208897 + MLT1B LTR MaLR 1 390 0 202 311 22 56 chr4 110120605 110120695 -92207652 + L2 LINE L2 3200 3286 -27 252 226 19 0 chr4 110120777 110120830 -92207517 + CT-rich Low_complexity Low_complexity 1 54 0 210 150 0 0 chr4 110120926 110120966 -92207381 + (TTCTCC)n Simple_repeat Simple_repeat 3 42 0 185 196 22 0 chr4 110120996 110121042 -92207305 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1196 276 38 45 chr4 110122100 110122549 -92205798 + LTR16A1 LTR ERVL 11 456 -1 279 167 0 0 chr4 110122656 110122704 -92205643 + MIR SINE MIR 105 152 -110 329 284 28 18 chr4 110122786 110122895 -92205452 - L2 LINE L2 0 3313 3204 213 393 45 18 chr4 110123006 110123118 -92205229 - MIR SINE MIR -56 152 38 218 200 0 0 chr4 110123890 110123940 -92204407 + A-rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr4 110124034 110124056 -92204291 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr4 110126545 110126584 -92201763 + AT_rich Low_complexity Low_complexity 1 39 0 1165 281 102 58 chr4 110127471 110127970 -92200377 - MLT1F1 LTR MaLR -8 559 14 2268 108 3 0 chr4 110129939 110130246 -92198101 + AluSp SINE Alu 1 308 -5 234 211 96 0 chr4 110130299 110130351 -92197996 + L2 LINE L2 3216 3272 0 256 221 0 21 chr4 110130368 110130463 -92197884 + GA-rich Low_complexity Low_complexity 3 95 0 1070 325 70 40 chr4 110130513 110130604 -92197743 + L2 LINE L2 1994 2081 -1233 231 36 0 0 chr4 110130604 110130632 -92197715 + (TC)n Simple_repeat Simple_repeat 1 28 0 1070 325 70 40 chr4 110130632 110131187 -92197160 + L2 LINE L2 2081 2659 -655 240 240 0 0 chr4 110131188 110131238 -92197109 - LTR33A LTR ERVL 0 523 474 361 393 41 12 chr4 110131616 110131858 -92196489 + L2 LINE L2 2698 2946 -368 402 267 157 16 chr4 110131957 110132148 -92196199 + L2 LINE L2 3095 3312 -1 844 370 33 17 chr4 110132468 110132928 -92195419 - L3 LINE CR1 -5 1572 1106 572 247 146 11 chr4 110132942 110133120 -92195227 - MLT1H LTR MaLR -2 547 346 2028 304 41 12 chr4 110133336 110134070 -92194277 - ERVL LTR ERVL -455 5309 4555 517 301 72 4 chr4 110134068 110134304 -92194043 - ERVL LTR ERVL -2791 2973 2722 * 1233 209 114 19 chr4 110134313 110134479 -92193868 - L1M3f LINE L1 -4980 348 199 387 0 0 0 chr4 110134479 110134522 -92193825 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1233 209 114 19 chr4 110134522 110134670 -92193677 - L1M3f LINE L1 -5129 199 4 14129 28 0 0 chr4 110136960 110139407 -92188940 - L1PA4 LINE L1 -3 6152 3706 495 275 36 7 chr4 110139658 110139796 -92188551 - MIR SINE MIR -2 260 119 772 253 55 13 chr4 110139811 110140123 -92188224 + HsTC2 DNA Tc2 1570 1894 -4 226 313 111 39 chr4 110140522 110140730 -92187617 + L2 LINE L2 3086 3308 -5 584 328 48 12 chr4 110140837 110141087 -92187260 + MIR SINE MIR 2 260 -2 843 318 62 44 chr4 110141110 110141497 -92186850 - LTR33 LTR ERVL -3 518 125 8407 32 0 0 chr4 110141558 110142591 -92185756 - L1P LINE L1 -2208 3938 2906 269 51 26 0 chr4 110143151 110143190 -92185157 + (TC)n Simple_repeat Simple_repeat 1 40 0 27 49 0 0 chr4 110143718 110143759 -92184588 + AT_rich Low_complexity Low_complexity 1 41 0 1130 170 41 9 chr4 110145243 110145461 -92182886 - L1PB4 LINE L1 0 6156 5932 30 0 0 0 chr4 110147322 110147352 -92180995 + AT_rich Low_complexity Low_complexity 1 30 0 7485 31 0 0 chr4 110147352 110148406 -92179941 - L1PA3 LINE L1 0 6155 5109 238 296 113 0 chr4 110148478 110148593 -92179754 - L2 LINE L2 -691 2623 2496 305 155 17 0 chr4 110149065 110149123 -92179224 - L1PB4 LINE L1 0 6156 6098 668 261 143 20 chr4 110149700 110150057 -92178290 - HAL1 LINE L1 -81 2426 2026 250 266 40 89 chr4 110150252 110150376 -92177971 - HAL1 LINE L1 -580 1927 1810 264 257 146 76 chr4 110150436 110151004 -92177343 - HAL1 LINE L1 -837 1670 1063 2224 115 0 0 chr4 110151171 110151467 -92176880 + AluSc SINE Alu 1 296 -13 386 366 63 21 chr4 110151635 110151919 -92176428 - HAL1 LINE L1 -1766 741 446 680 332 42 26 chr4 110151982 110152365 -92175982 - MLT1I LTR MaLR 0 409 21 23 54 0 0 chr4 110154743 110154780 -92173567 + AT_rich Low_complexity Low_complexity 1 37 0 198 143 0 0 chr4 110156224 110156259 -92172088 + (TG)n Simple_repeat Simple_repeat 2 36 0 2635 198 14 10 chr4 110156558 110157058 -92171289 - MER89 LTR ERV1 0 559 58 598 200 0 0 chr4 110157067 110157187 -92171160 - FLAM_A SINE Alu -13 129 10 351 172 0 0 chr4 110157226 110157284 -92171063 - MER89 LTR ERV1 -500 59 2 2163 114 0 10 chr4 110158620 110158927 -92169420 + AluSx SINE Alu 1 304 -8 471 300 72 11 chr4 110159817 110159997 -92168350 - MIR SINE MIR -14 248 58 207 285 85 23 chr4 110160003 110160133 -92168214 + L2 LINE L2 3112 3249 -64 3118 173 5 5 chr4 110160752 110161341 -92167006 - L1MA5 LINE L1 0 6300 5712 25 75 0 0 chr4 110161378 110161431 -92166916 + AT_rich Low_complexity Low_complexity 1 53 0 23 33 0 0 chr4 110161896 110161926 -92166421 + AT_rich Low_complexity Low_complexity 1 30 0 328 338 22 29 chr4 110162294 110162433 -92165914 - L2 LINE L2 0 3313 3176 22 0 0 0 chr4 110162547 110162569 -92165778 + AT_rich Low_complexity Low_complexity 1 22 0 317 333 51 0 chr4 110163438 110163555 -92164792 - L2 LINE L2 0 3313 3191 2393 62 3 7 chr4 110163609 110163915 -92164432 + AluY SINE Alu 1 305 -6 369 0 0 0 chr4 110165167 110165208 -92163139 + (CA)n Simple_repeat Simple_repeat 1 41 0 320 376 30 0 chr4 110165579 110165712 -92162635 + MIR SINE MIR 66 202 -60 279 0 0 0 chr4 110165894 110165925 -92162422 + (CA)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr4 110166401 110166426 -92161921 + AT_rich Low_complexity Low_complexity 1 25 0 565 279 89 75 chr4 110167801 110168238 -92160109 - LTR16A1 LTR ERVL -12 445 3 23 0 0 0 chr4 110168317 110168340 -92160007 + AT_rich Low_complexity Low_complexity 1 23 0 261 130 0 0 chr4 110168421 110168467 -92159880 - MADE1 DNA Mariner 0 80 35 3152 103 24 105 chr4 110168649 110169280 -92159067 - L1PB1 LINE L1 -2 6149 5570 4782 28 0 0 chr4 110169280 110169869 -92158478 + L1PA4 LINE L1 5585 6179 0 2140 108 12 0 chr4 110169870 110170203 -92158144 - L1PB1 LINE L1 -559 5592 5256 6538 26 0 0 chr4 110170228 110170991 -92157356 - L1PA2 LINE L1 -1 6154 5392 2667 219 7 0 chr4 110171022 110171642 -92156705 - L1PB1 LINE L1 -904 5242 4619 308 203 23 175 chr4 110171640 110171857 -92156490 + L1ME1 LINE L1 4764 4947 -1199 * 318 241 61 40 chr4 110171872 110172227 -92156120 + L1ME1 LINE L1 5764 6159 -7 248 217 0 0 chr4 110173703 110173749 -92154598 - LTR40a LTR ERVL 0 519 474 522 243 24 25 chr4 110173812 110173988 -92154359 - L1MA9 LINE L1 -202 6110 5937 6324 108 10 0 chr4 110173988 110175738 -92152609 - L1PA8 LINE L1 -4 6483 4722 1635 97 11 30 chr4 110175747 110175965 -92152382 - L1PA8 LINE L1 -4826 1635 1421 5433 157 20 30 chr4 110175965 110177047 -92151300 + MER11C LTR ERVK 1 1071 0 1635 97 11 30 chr4 110177047 110177097 -92151250 - L1PA8 LINE L1 -5040 1421 1372 2216 92 0 4 chr4 110177479 110177797 -92150550 + AluSg SINE Alu 1 317 0 2285 98 3 0 chr4 110177892 110178198 -92150149 - AluY SINE Alu -4 307 1 380 311 113 11 chr4 110178362 110178579 -92149768 - L2 LINE L2 -255 3017 2784 263 296 23 0 chr4 110178938 110179026 -92149321 + MLT1K LTR MaLR 497 586 -2 200 403 0 16 chr4 110179582 110179706 -92148641 + L2 LINE L2 2228 2349 -965 371 366 55 24 chr4 110179789 110180081 -92148266 + L2 LINE L2 2562 2862 -452 254 111 0 0 chr4 110181345 110181390 -92146957 - LTR66 LTR ERVL -172 438 394 191 167 24 0 chr4 110181585 110181627 -92146720 + GA-rich Low_complexity Low_complexity 2 44 0 21 0 0 0 chr4 110182327 110182348 -92145999 + AT_rich Low_complexity Low_complexity 1 21 0 2330 58 0 26 chr4 110183759 110184070 -92144277 + AluY SINE Alu 1 303 -8 216 200 0 0 chr4 110185274 110185329 -92143018 + (TA)n Simple_repeat Simple_repeat 1 55 0 21 0 0 0 chr4 110185424 110185445 -92142902 + AT_rich Low_complexity Low_complexity 1 21 0 245 285 61 0 chr4 110185507 110185672 -92142675 - L1M4 LINE L1 -3617 2529 2355 39 50 0 0 chr4 110186328 110186388 -92141959 + AT_rich Low_complexity Low_complexity 1 60 0 486 200 33 25 chr4 110186558 110186678 -92141669 - FLAM_A SINE Alu -11 122 2 21 0 0 0 chr4 110188212 110188233 -92140114 + AT_rich Low_complexity Low_complexity 1 21 0 740 321 84 29 chr4 110189953 110190430 -92137917 - MLT1J LTR MaLR -8 503 1 22 80 0 0 chr4 110190511 110190561 -92137786 + AT_rich Low_complexity Low_complexity 1 50 0 1754 144 100 5 chr4 110190741 110191131 -92137216 + L1MA7 LINE L1 5865 6291 0 25 65 0 0 chr4 110191333 110191379 -92136968 + AT_rich Low_complexity Low_complexity 1 46 0 1243 197 0 0 chr4 110191412 110191666 -92136681 - L1MA4 LINE L1 -4 6296 6043 25 31 0 0 chr4 110192363 110192395 -92135952 + AT_rich Low_complexity Low_complexity 1 32 0 8170 96 29 2 chr4 110192403 110194364 -92133983 - L1PA7 LINE L1 -3 6151 4153 208 180 60 0 chr4 110194672 110194722 -92133625 + A-rich Low_complexity Low_complexity 1 53 0 322 332 97 22 chr4 110196685 110196911 -92131436 + L1MB8 LINE L1 -302 4294967236 -6606 408 71 0 0 chr4 110197278 110197334 -92131013 + (CA)n Simple_repeat Simple_repeat 2 57 0 185 0 40 0 chr4 110197452 110197477 -92130870 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 797 287 124 43 chr4 110197486 110198957 -92129390 + L1MB8 LINE L1 877 2772 -4053 436 49 49 12 chr4 110199053 110199134 -92129213 + (TA)n Simple_repeat Simple_repeat 1 84 0 225 0 0 0 chr4 110199167 110199192 -92129155 + (TG)n Simple_repeat Simple_repeat 2 26 0 1851 252 77 28 chr4 110199322 110200155 -92128192 + L1MB8 LINE L1 2789 3662 -2982 2593 203 4 5 chr4 110200224 110200787 -92127560 - L1PB1 LINE L1 -957 5189 4628 3451 101 38 1 chr4 110200787 110201381 -92126966 + L1PB1 LINE L1 5179 5792 -359 357 231 12 6 chr4 110201426 110201595 -92126752 + (TA)n Simple_repeat Simple_repeat 1 170 0 218 227 0 0 chr4 110201621 110201665 -92126682 + (TA)n Simple_repeat Simple_repeat 1 44 0 2280 122 28 6 chr4 110201666 110202026 -92126321 + L1PB1 LINE L1 5783 6150 -1 1537 266 38 8 chr4 110202069 110202576 -92125771 + L1MB8 LINE L1 4906 5427 -1217 776 229 60 5 chr4 110202615 110202830 -92125517 - MIR SINE MIR -6 256 27 200 258 32 0 chr4 110202843 110202905 -92125442 + MIR3 SINE MIR 93 156 -52 433 266 149 44 chr4 110202928 110203134 -92125213 - MIR SINE MIR -18 244 3 183 337 22 22 chr4 110203184 110203273 -92125074 - L2 LINE L2 0 3272 3184 613 232 19 77 chr4 110203469 110203728 -92124619 + L1MB8 LINE L1 5423 5666 -978 3077 229 22 55 chr4 110203739 110204685 -92123662 + L1MA4 LINE L1 5385 6299 -1 407 260 128 30 chr4 110204677 110204796 -92123551 + L1MB8 LINE L1 6372 6478 -198 * 3767 146 34 3 chr4 110204796 110205466 -92122881 + L1MA4 LINE L1 5605 6295 -5 407 260 128 30 chr4 110205466 110205611 -92122736 + L1MB8 LINE L1 6478 6662 -14 24 0 0 0 chr4 110205733 110205757 -92122590 + AT_rich Low_complexity Low_complexity 1 24 0 22 80 0 0 chr4 110205803 110205853 -92122494 + AT_rich Low_complexity Low_complexity 1 50 0 29 60 0 0 chr4 110205924 110205974 -92122373 + AT_rich Low_complexity Low_complexity 1 50 0 3153 176 49 56 chr4 110206746 110206985 -92121362 - L1MC2 LINE L1 -12 6332 6093 1844 152 3 16 chr4 110206985 110207300 -92121047 - AluSq SINE Alu -2 311 1 3153 176 49 56 chr4 110207300 110207810 -92120537 - L1MC2 LINE L1 -251 6093 5588 864 55 0 0 chr4 110207805 110207914 -92120433 + L1PA6 LINE L1 4699 4807 -1339 * 6586 72 12 0 chr4 110207918 110208811 -92119536 + L1PA6 LINE L1 5227 6128 -26 1368 91 0 10 chr4 110208811 110209116 -92119231 + (GAA)n Simple_repeat Simple_repeat 1 303 0 1066 198 21 8 chr4 110209118 110209356 -92118991 - L1MC2 LINE L1 -2407 5588 5348 244 173 19 0 chr4 110210249 110210301 -92118046 - MER91B DNA MER1_type -60 130 78 228 224 0 0 chr4 110210601 110210650 -92117697 + CT-rich Low_complexity Low_complexity 2 50 0 354 290 121 48 chr4 110210844 110211051 -92117296 + MIR SINE MIR 28 249 -13 22 0 0 0 chr4 110211330 110211352 -92116995 + AT_rich Low_complexity Low_complexity 1 22 0 2457 149 32 2 chr4 110211449 110211891 -92116456 - L1MA9 LINE L1 -6 6306 5852 273 196 0 0 chr4 110212898 110212954 -92115393 + (TG)n Simple_repeat Simple_repeat 2 57 0 4616 215 75 18 chr4 110212968 110213266 -92115081 - MER45R DNA AcHobo 0 1581 1301 1749 168 10 0 chr4 110213266 110213563 -92114784 - AluJb SINE Alu -12 300 1 4616 215 75 18 chr4 110213563 110214714 -92113633 - MER45R DNA AcHobo -280 1301 41 344 171 7 18 chr4 110214757 110214830 -92113517 + MLT1F1 LTR MaLR 66 139 -442 1753 249 30 4 chr4 110214877 110215370 -92112977 + L1MD3 LINE L1 7478 7983 -12 16939 186 23 17 chr4 110215439 110221835 -92106512 + L1PA15 LINE L1 1 6359 -1244 2159 158 17 8 chr4 110221835 110222196 -92106151 + THE1B LTR MaLR 1 364 0 9088 117 67 43 chr4 110222196 110223659 -92104688 + THE1B-int LTR MaLR 1 1504 -76 1947 168 7 0 chr4 110223659 110223957 -92104390 + AluSx SINE Alu 1 300 -12 9088 117 67 43 chr4 110223957 110224036 -92104311 + THE1B-int LTR MaLR 1504 1580 0 2140 150 19 6 chr4 110224036 110224395 -92103952 + THE1B LTR MaLR 1 364 0 16939 186 23 17 chr4 110224395 110225018 -92103329 + L1PA15 LINE L1 6358 7603 0 2455 76 0 3 chr4 110225839 110226140 -92102207 + AluY SINE Alu 1 300 -11 22 35 0 0 chr4 110226246 110226275 -92102072 + AT_rich Low_complexity Low_complexity 1 29 0 225 175 119 32 chr4 110226285 110226411 -92101936 - Charlie1 DNA MER1_type -132 2629 2493 200 333 17 0 chr4 110226415 110226475 -92101872 - L2 LINE L2 -244 3069 3009 30 45 0 0 chr4 110226565 110226609 -92101738 + AT_rich Low_complexity Low_complexity 1 44 0 376 345 55 25 chr4 110226844 110227079 -92101268 + HAL1b LINE L1 478 719 -629 9535 197 31 21 chr4 110227417 110228293 -92100054 + L1PB3 LINE L1 2780 3646 -2508 207 0 0 0 chr4 110228293 110228316 -92100031 + (CAA)n Simple_repeat Simple_repeat 2 24 0 9535 197 31 21 chr4 110228316 110229201 -92099146 + L1PB3 LINE L1 3646 4521 -1633 1971 162 141 8 chr4 110229201 110229578 -92098769 + MSTA LTR MaLR 2 428 0 8130 156 40 42 chr4 110229580 110231162 -92097185 + MSTA-int LTR MaLR 3 1580 0 1691 184 146 8 chr4 110231162 110231538 -92096809 + MSTA LTR MaLR 1 428 0 9535 197 31 21 chr4 110231538 110233114 -92095233 + L1PB3 LINE L1 4520 6154 0 208 178 27 55 chr4 110233146 110233219 -92095128 + A-rich Low_complexity Low_complexity 5 75 0 1509 154 79 11 chr4 110235456 110235723 -92092624 - AluJb SINE Alu -8 304 20 1652 236 97 58 chr4 110236674 110237190 -92091157 - MLT2B3 LTR ERVL 0 554 19 2159 147 25 6 chr4 110237191 110237546 -92090801 - THE1B LTR MaLR 0 364 3 10243 120 37 4 chr4 110237553 110239077 -92089270 - THE1B-int LTR MaLR -6 1574 1 2131 154 25 6 chr4 110239077 110239434 -92088913 - THE1B LTR MaLR 0 364 1 233 186 129 0 chr4 110240848 110240918 -92087429 - MER116 DNA Mariner 0 80 2 22 0 0 0 chr4 110241303 110241325 -92087022 + AT_rich Low_complexity Low_complexity 1 22 0 5645 164 32 63 chr4 110243442 110245431 -92082916 + L1MA6 LINE L1 3899 5949 -351 180 0 0 0 chr4 110245431 110245451 -92082896 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 363 44 0 0 chr4 110245450 110245495 -92082852 + (CA)n Simple_repeat Simple_repeat 2 46 0 5645 164 32 63 chr4 110245451 110246004 -92082343 + L1MA6 LINE L1 5949 6298 -2 509 56 0 0 chr4 110246301 110246372 -92081975 - L1PA13 LINE L1 0 6163 6093 3272 78 11 7 chr4 110246372 110246823 -92081524 - L1PA13 LINE L1 -310 5853 5401 7097 170 13 9 chr4 110246823 110248198 -92080149 + L1P LINE L1 2740 4119 -2027 23 0 0 0 chr4 110248275 110248298 -92080049 + AT_rich Low_complexity Low_complexity 1 23 0 5453 98 18 0 chr4 110248443 110249241 -92079106 + L1MA1 LINE L1 5485 6296 -6 397 281 67 84 chr4 110250643 110251284 -92077063 + L1M4 LINE L1 4184 4813 -1333 1146 220 42 81 chr4 110251559 110251990 -92076357 + MLT2D LTR ERVL 1 414 0 333 0 0 0 chr4 110253453 110253490 -92074857 + (CA)n Simple_repeat Simple_repeat 2 38 0 1979 174 23 48 chr4 110253491 110253887 -92074460 - MLT1B LTR MaLR 0 390 5 849 74 0 0 chr4 110253887 110254009 -92074338 + (TAGA)n Simple_repeat Simple_repeat 3 124 0 199 399 61 7 chr4 110254527 110254675 -92073672 + L2 LINE L2 3116 3271 -1 297 338 219 24 chr4 110254714 110255179 -92073168 + L3 LINE CR1 324 879 -698 274 394 44 10 chr4 110255309 110255512 -92072835 - MIR SINE MIR -40 222 13 36 77 0 0 chr4 110256035 110256113 -92072234 + AT_rich Low_complexity Low_complexity 1 78 0 200 128 26 0 chr4 110256162 110256201 -92072146 + A-rich Low_complexity Low_complexity 5 44 0 25 31 0 0 chr4 110256609 110256641 -92071706 + AT_rich Low_complexity Low_complexity 1 32 0 181 364 52 26 chr4 110257553 110257630 -92070717 - L2 LINE L2 -37 3235 3157 23161 50 2 3 chr4 110257655 110261251 -92067096 - L1PA6 LINE L1 -126 6028 2436 917 53 0 0 chr4 110261251 110261365 -92066982 + L1PA5 LINE L1 6038 6151 -3 23 54 0 0 chr4 110261531 110261568 -92066779 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr4 110262676 110262713 -92065634 + AT_rich Low_complexity Low_complexity 1 37 0 311 319 56 50 chr4 110262731 110262891 -92065456 - L3 LINE CR1 -5 1572 1412 203 373 45 32 chr4 110263015 110263235 -92065112 + L2 LINE L2 2467 2689 -625 328 259 173 51 chr4 110263309 110263506 -92064841 - MLT1J2 LTR MaLR -133 317 97 10052 168 21 33 chr4 110263913 110265320 -92063027 - L1 LINE L1 -1636 5929 4593 1993 152 0 0 chr4 110265320 110265623 -92062724 - AluSx SINE Alu -3 309 7 10052 168 21 33 chr4 110265623 110266992 -92061355 - L1 LINE L1 -2972 4593 3210 553 113 10 10 chr4 110267000 110267097 -92061250 + (TCCC)n Simple_repeat Simple_repeat 3 99 0 1712 153 0 43 chr4 110267108 110267390 -92060957 - AluSx SINE Alu -39 273 4 422 83 0 0 chr4 110267392 110267464 -92060883 - L1 LINE L1 -4337 3228 3157 * 1589 277 55 30 chr4 110267461 110268265 -92060082 - L1MDb LINE L1 -1461 4945 4122 4420 189 30 3 chr4 110268307 110269744 -92058603 - L1PB4 LINE L1 -8 6148 4678 2949 172 3 24 chr4 110269743 110270364 -92057983 + L1PB4 LINE L1 4092 4699 -1447 * 1122 149 5 51 chr4 110270367 110270581 -92057766 - L1MC1 LINE L1 -13 6320 6117 2708 168 30 13 chr4 110270583 110271113 -92057234 - L1MC1 LINE L1 -338 5995 5457 2610 288 42 2 chr4 110271130 110272190 -92056157 - L1MDb LINE L1 -2339 4067 2966 2014 247 63 11 chr4 110272188 110273025 -92055322 - L1MDb LINE L1 -4712 1694 788 * 768 243 27 32 chr4 110273018 110273203 -92055144 - L1MDb LINE L1 -6206 203 20 * 304 265 103 52 chr4 110273415 110273551 -92054796 + L1ME4a LINE L1 5978 6120 -1 1962 139 0 3 chr4 110273667 110273976 -92054371 + AluSg SINE Alu 1 308 -2 225 0 0 0 chr4 110275271 110275296 -92053051 + (TG)n Simple_repeat Simple_repeat 2 26 0 622 286 43 51 chr4 110276144 110276317 -92052030 - MIR SINE MIR -2 260 88 2259 116 0 0 chr4 110276317 110276618 -92051729 - AluSq SINE Alu -12 301 1 622 286 43 51 chr4 110276618 110276678 -92051669 - MIR SINE MIR -174 88 29 6121 151 76 14 chr4 110277263 110277377 -92050970 + Tigger3b DNA MER2_type 1 106 -2922 1885 147 155 11 chr4 110277377 110277751 -92050596 + MSTA LTR MaLR 1 428 0 6121 151 76 14 chr4 110277751 110278795 -92049552 + Tigger3b DNA MER2_type 106 1231 0 1364 229 83 23 chr4 110278803 110279318 -92049029 + L1ME2 LINE L1 3793 4338 -1808 405 256 62 31 chr4 110279463 110279623 -92048724 + L1ME2 LINE L1 4722 4886 -1260 303 231 75 37 chr4 110279744 110279822 -92048525 + L1ME2 LINE L1 5042 5129 -1017 747 139 54 0 chr4 110279822 110279988 -92048359 + L1MA7 LINE L1 6117 6291 0 303 231 75 37 chr4 110279988 110280043 -92048304 + L1ME2 LINE L1 5129 5180 -966 570 262 35 0 chr4 110280048 110280220 -92048127 + L1ME2 LINE L1 5709 5886 -278 1823 133 43 87 chr4 110281345 110281737 -92046610 - THE1C LTR MaLR 0 375 1 246 350 86 7 chr4 110281847 110281987 -92046360 + L2 LINE L2 2586 2736 -578 1612 176 39 8 chr4 110282049 110282412 -92045935 + L1MA9 LINE L1 5939 6312 0 5376 188 35 33 chr4 110282593 110283894 -92044453 + L1 LINE L1 3181 4484 -1662 237 212 18 62 chr4 110283871 110283984 -92044363 + L1MC5 LINE L1 7132 7239 -722 * 184 197 15 30 chr4 110284047 110284113 -92044234 + GA-rich Low_complexity Low_complexity 2 66 0 783 236 99 72 chr4 110284113 110284680 -92043667 + L1MC5 LINE L1 7316 7897 -64 730 300 76 17 chr4 110284727 110285084 -92043263 + Charlie2b DNA MER1_type 292 669 -2113 657 38 0 0 chr4 110285097 110285177 -92043170 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 1379 261 126 41 chr4 110285213 110285803 -92042544 + Charlie2a DNA MER1_type 1465 2004 -858 2243 58 0 4 chr4 110285803 110286079 -92042268 - AluY SINE Alu -14 297 23 1379 261 126 41 chr4 110286079 110286728 -92041619 + Charlie2a DNA MER1_type 2004 2829 -33 1193 208 67 101 chr4 110286729 110287104 -92041243 - MER57A LTR ERV1 0 403 42 21 0 0 0 chr4 110288218 110288239 -92040108 + AT_rich Low_complexity Low_complexity 1 21 0 776 178 0 0 chr4 110290026 110290155 -92038192 - FLAM_C SINE Alu 0 133 5 2027 137 0 3 chr4 110290851 110291144 -92037203 + AluSx SINE Alu 1 292 -20 1317 225 13 49 chr4 110291241 110291628 -92036719 - L1ME1 LINE L1 -168 5998 5626 1210 233 69 29 chr4 110291669 110292017 -92036330 + MLT1A1 LTR MaLR 4 365 0 761 227 0 12 chr4 110292017 110292189 -92036158 - L1ME1 LINE L1 -578 5586 5417 24 77 0 0 chr4 110293359 110293411 -92034936 + AT_rich Low_complexity Low_complexity 1 52 0 236 333 21 0 chr4 110293717 110293810 -92034537 - MIR3 SINE MIR -7 201 107 204 259 69 60 chr4 110293888 110294004 -92034343 + MIR SINE MIR 79 195 -67 630 244 173 50 chr4 110294004 110294427 -92033920 - HsTC2 DNA Tc2 0 1900 1250 378 250 33 17 chr4 110294397 110294517 -92033830 - HsTC2 DNA Tc2 -1152 746 625 * 3593 110 2 18 chr4 110294517 110294569 -92033778 - L1PA14 LINE L1 -2 6159 6108 3371 195 21 79 chr4 110294569 110295597 -92032750 + LTR5 LTR ERVK 1 969 0 3593 110 2 18 chr4 110295597 110296099 -92032248 - L1PA14 LINE L1 -53 6108 5614 3782 139 35 1 chr4 110296099 110296196 -92032151 + L1P4 LINE L1 4599 4691 -1470 294 29 0 0 chr4 110296196 110296231 -92032116 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3782 139 35 1 chr4 110296231 110297104 -92031243 + L1P4 LINE L1 4691 5604 -557 1065 321 62 29 chr4 110297104 110297721 -92030626 - HsTC2 DNA Tc2 -1261 637 1 204 40 0 0 chr4 110298693 110298718 -92029629 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 256 312 148 30 chr4 110298969 110299056 -92029291 + MIR SINE MIR 20 95 -167 2045 144 18 37 chr4 110299056 110299438 -92028909 + THE1C LTR MaLR 1 375 0 256 312 148 30 chr4 110299438 110299552 -92028795 + MIR SINE MIR 95 245 -17 30 59 0 0 chr4 110299557 110299608 -92028739 + AT_rich Low_complexity Low_complexity 1 51 0 234 196 54 0 chr4 110299892 110299948 -92028399 - MER53 DNA DNA -84 105 47 797 270 86 34 chr4 110300316 110300842 -92027505 + L1ME3A LINE L1 4212 4764 -1382 683 308 58 11 chr4 110300861 110301312 -92027035 + L1ME3A LINE L1 4806 5277 -869 1360 278 117 32 chr4 110301352 110302136 -92026211 + L1ME3A LINE L1 5316 6166 -4 10423 172 27 28 chr4 110302466 110303521 -92024826 + L1M2 LINE L1 3011 4066 -2225 2341 130 8 3 chr4 110303521 110303882 -92024465 - THE1B LTR MaLR -1 363 1 10423 172 27 28 chr4 110303882 110305474 -92022873 + L1M2 LINE L1 4066 5654 -637 327 308 0 39 chr4 110305734 110305864 -92022483 - MIR SINE MIR -26 236 112 186 222 0 0 chr4 110306094 110306148 -92022199 + (TA)n Simple_repeat Simple_repeat 2 55 0 30 27 0 0 chr4 110306161 110306198 -92022149 + AT_rich Low_complexity Low_complexity 1 37 0 7574 32 0 0 chr4 110306808 110308488 -92019859 + L1PA3 LINE L1 4479 6155 0 283 121 182 0 chr4 110310024 110310090 -92018257 - MER53 DNA DNA 0 189 112 376 150 80 35 chr4 110310128 110310241 -92018106 - MER53 DNA DNA -71 118 1 349 66 33 0 chr4 110311616 110311677 -92016670 + (TG)n Simple_repeat Simple_repeat 2 64 0 200 219 0 14 chr4 110311733 110311806 -92016541 + (TA)n Simple_repeat Simple_repeat 2 73 0 984 300 80 80 chr4 110312862 110313486 -92014861 + L2 LINE L2 1892 2515 -799 2233 105 0 0 chr4 110313486 110313782 -92014565 - AluSq SINE Alu -17 296 1 984 300 80 80 chr4 110313782 110313795 -92014552 + L2 LINE L2 2515 2527 -787 2058 119 0 3 chr4 110313795 110314088 -92014259 - AluSx SINE Alu -16 296 5 984 300 80 80 chr4 110314088 110314198 -92014149 + L2 LINE L2 2526 2640 -674 327 274 75 27 chr4 110314235 110314381 -92013966 + MLT1J LTR MaLR 28 180 -331 1667 201 54 3 chr4 110314542 110314876 -92013471 - MLT1A1 LTR MaLR 0 365 15 243 239 30 0 chr4 110314889 110314956 -92013391 + MLT1L LTR MaLR 389 457 -158 536 353 22 24 chr4 110315156 110315460 -92012887 + L2 LINE L2 2762 3066 -247 4850 190 31 58 chr4 110315460 110315789 -92012558 - L1PB4 LINE L1 0 6156 5820 330 26 0 0 chr4 110315789 110315828 -92012519 + (TG)n Simple_repeat Simple_repeat 1 39 0 4850 190 31 58 chr4 110315828 110317526 -92010821 - L1PB4 LINE L1 -336 5820 4175 2450 65 15 9 chr4 110317537 110317873 -92010474 - L1PA10 LINE L1 0 6168 5831 359 179 0 0 chr4 110317873 110317940 -92010407 + L1 LINE L1 4794 4860 -1286 * 442 220 30 0 chr4 110317937 110318037 -92010310 - L1PB4 LINE L1 -1959 4187 4085 3334 202 34 15 chr4 110318038 110318557 -92009790 + L1 LINE L1 2869 3376 -2770 1872 122 0 7 chr4 110318557 110318853 -92009494 + AluSg SINE Alu 25 318 0 3334 202 34 15 chr4 110318853 110319388 -92008959 + L1 LINE L1 3376 4048 -2098 279 259 130 38 chr4 110319491 110319622 -92008725 + L2 LINE L2 3168 3310 -3 294 354 150 31 chr4 110319631 110319925 -92008422 - L3 LINE CR1 -406 1171 843 6367 207 36 27 chr4 110320208 110322353 -92005994 - L1PB3 LINE L1 -251 5903 3741 812 254 60 76 chr4 110322353 110322735 -92005612 + MER20B DNA MER1_type 44 419 -364 253 325 51 0 chr4 110322760 110322877 -92005470 - MER20B DNA MER1_type -1 782 660 23 0 0 0 chr4 110323042 110323065 -92005282 + AT_rich Low_complexity Low_complexity 1 23 0 17827 109 8 10 chr4 110323237 110325657 -92002690 - L1P LINE L1 -2230 3916 1500 2008 114 3 46 chr4 110325657 110325981 -92002366 - AluSg SINE Alu 0 310 1 17827 109 8 10 chr4 110325981 110326304 -92002043 - L1P LINE L1 -4646 1500 1178 10168 91 24 2 chr4 110326306 110328503 -91999844 + L1PA7 LINE L1 3931 6151 -3 187 216 39 20 chr4 110328529 110328580 -91999767 + L2 LINE L2 3184 3235 -78 433 360 33 21 chr4 110328749 110329082 -91999265 - ERVL LTR ERVL -384 5380 5044 24 0 0 0 chr4 110329566 110329590 -91998757 + AT_rich Low_complexity Low_complexity 1 24 0 2509 159 57 19 chr4 110330312 110330783 -91997564 - LTR45B LTR ERV1 0 489 1 1016 189 20 134 chr4 110331672 110332085 -91996262 + MLT1A1 LTR MaLR 2 426 0 210 286 221 13 chr4 110332509 110332586 -91995761 - L2 LINE L2 -32 3240 3148 21 36 0 0 chr4 110332626 110332654 -91995693 + AT_rich Low_complexity Low_complexity 1 28 0 211 328 72 40 chr4 110332688 110332813 -91995534 + L2 LINE L2 3144 3272 0 24 67 0 0 chr4 110332815 110332860 -91995487 + AT_rich Low_complexity Low_complexity 1 45 0 340 330 33 10 chr4 110333138 110333339 -91995008 + L1ME2 LINE L1 5439 5644 -477 292 281 82 7 chr4 110333433 110333568 -91994779 + L1ME2 LINE L1 5755 5899 -222 2139 98 0 3 chr4 110334535 110334841 -91993506 - AluSx SINE Alu 0 305 1 414 249 41 71 chr4 110334990 110335159 -91993188 + L1ME2 LINE L1 5956 6119 -45 1185 227 68 0 chr4 110335278 110335556 -91992791 - L1MB4 LINE L1 -61 6119 5823 1679 174 25 30 chr4 110335569 110335931 -91992416 - L1MC1 LINE L1 -14 6319 5960 251 103 0 0 chr4 110335939 110335978 -91992369 - L1MA6 LINE L1 -4 6296 6258 3190 192 14 55 chr4 110335983 110336150 -91992197 - L1MC1 LINE L1 -373 5960 5788 3015 111 7 4 chr4 110336150 110336600 -91991747 - L1PA13 LINE L1 -3 6160 5710 3190 192 14 55 chr4 110336600 110337214 -91991133 - L1MC1 LINE L1 -545 5788 5211 22 0 0 0 chr4 110338052 110338074 -91990273 + AT_rich Low_complexity Low_complexity 1 22 0 346 331 147 46 chr4 110338239 110338616 -91989731 - L2 LINE L2 -277 3036 2616 291 224 0 0 chr4 110338616 110338692 -91989655 + GA-rich Low_complexity Low_complexity 2 77 0 258 322 35 0 chr4 110339304 110339419 -91988928 - L1MC4 LINE L1 -156 7886 7768 825 244 99 78 chr4 110339422 110339868 -91988479 - L1MC4 LINE L1 -1138 6904 6450 4353 76 13 18 chr4 110340043 110340659 -91987688 + L1PA7 LINE L1 5529 6141 -13 306 299 92 98 chr4 110341183 110341541 -91986806 + MLT1K LTR MaLR 43 398 -190 695 69 10 0 chr4 110341579 110341681 -91986666 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 260 284 95 59 chr4 110342062 110342231 -91986116 - L2 LINE L2 -846 2468 2294 * 568 295 59 30 chr4 110342221 110342458 -91985889 + MIR SINE MIR 19 262 0 * 3454 295 61 25 chr4 110342455 110343825 -91984522 - L2 LINE L2 -730 2584 1165 2327 174 65 33 chr4 110343940 110344363 -91983984 + MLT2B2 LTR ERVL 37 478 -37 338 0 24 0 chr4 110344363 110344405 -91983942 + (CA)n Simple_repeat Simple_repeat 1 43 0 2327 174 65 33 chr4 110344405 110344440 -91983907 + MLT2B2 LTR ERVL 478 510 -5 207 0 0 0 chr4 110344700 110344723 -91983624 + (CA)n Simple_repeat Simple_repeat 2 24 0 34 24 0 0 chr4 110344792 110344833 -91983514 + AT_rich Low_complexity Low_complexity 1 41 0 2054 141 3 0 chr4 110345992 110346290 -91982057 - AluSq SINE Alu -14 299 1 971 292 105 33 chr4 110346709 110347357 -91980990 + L2 LINE L2 2601 3313 0 643 313 134 26 chr4 110347741 110348935 -91979412 - L1ME3A LINE L1 -97 6007 4682 338 281 35 0 chr4 110349037 110349151 -91979196 - L1ME3A LINE L1 -1572 4508 4391 608 304 86 32 chr4 110349609 110350441 -91977906 - L1ME LINE L1 -4791 1291 537 421 325 152 12 chr4 110350470 110350799 -91977548 - L1ME LINE L1 -5630 440 66 708 264 50 46 chr4 110350856 110351273 -91977074 - L1MCc LINE L1 -4899 1524 1129 207 0 0 0 chr4 110351429 110351452 -91976895 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 39 64 0 18 chr4 110352320 110352351 -91975996 + AT_rich Low_complexity Low_complexity 1 31 -77 512 124 11 0 chr4 110352351 110352440 -91975907 - L1PB1 LINE L1 -5 6146 6057 39 64 0 18 chr4 110352440 110352460 -91975887 + AT_rich Low_complexity Low_complexity 31 50 -58 2976 154 27 8 chr4 110352460 110352985 -91975362 - L1PA13 LINE L1 -7 6156 5622 39 64 0 18 chr4 110352985 110353042 -91975305 + AT_rich Low_complexity Low_complexity 50 108 0 21 36 0 0 chr4 110353374 110353402 -91974945 + AT_rich Low_complexity Low_complexity 1 28 0 281 254 131 8 chr4 110353533 110353655 -91974692 + LTR41 LTR ERVL 1 137 -636 425 268 58 107 chr4 110353701 110354029 -91974318 + LTR41 LTR ERVL 351 662 -111 198 233 19 10 chr4 110354954 110355057 -91973290 + (TA)n Simple_repeat Simple_repeat 2 105 0 208 250 36 107 chr4 110355381 110355465 -91972882 - L2 LINE L2 0 3272 3195 21 36 0 0 chr4 110355611 110355639 -91972708 + AT_rich Low_complexity Low_complexity 1 28 0 365 302 10 0 chr4 110356726 110356822 -91971525 + MER5A DNA MER1_type 13 109 -80 215 250 56 83 chr4 110357256 110357328 -91971019 + MIR SINE MIR 34 103 -105 22 0 0 0 chr4 110357404 110357426 -91970921 + AT_rich Low_complexity Low_complexity 1 22 0 295 57 0 0 chr4 110357865 110357900 -91970447 - L1P LINE L1 -1182 4964 4930 1207 45 0 13 chr4 110357904 110358061 -91970286 + L1PA5 LINE L1 6000 6154 0 1203 276 46 42 chr4 110358347 110358822 -91969525 + L3b LINE CR1 1102 1578 -5 264 122 0 0 chr4 110359843 110359884 -91968463 + (T)n Simple_repeat Simple_repeat 1 41 0 475 297 130 5 chr4 110360438 110360623 -91967724 + MIR SINE MIR 41 248 -14 342 318 132 54 chr4 110361671 110362112 -91966235 + L2 LINE L2 2838 3312 -1 21 0 0 0 chr4 110362309 110362330 -91966017 + AT_rich Low_complexity Low_complexity 1 21 0 2136 59 0 7 chr4 110362684 110362979 -91965368 + AluY SINE Alu 23 311 0 285 29 0 0 chr4 110363428 110363462 -91964885 + (TC)n Simple_repeat Simple_repeat 2 35 0 * 324 0 0 0 chr4 110363461 110363497 -91964850 + (TG)n Simple_repeat Simple_repeat 1 36 0 198 0 0 0 chr4 110363496 110363518 -91964829 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 229 338 169 10 chr4 110363528 110363729 -91964618 + MIR SINE MIR 9 241 -21 261 0 0 0 chr4 110363825 110363854 -91964493 + (CA)n Simple_repeat Simple_repeat 2 30 0 218 245 0 0 chr4 110364585 110364638 -91963709 + (TGG)n Simple_repeat Simple_repeat 3 55 0 28 29 0 0 chr4 110365531 110365566 -91962781 + AT_rich Low_complexity Low_complexity 1 35 0 196 89 22 44 chr4 110366512 110366557 -91961790 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 15625 211 23 16 chr4 110366636 110368353 -91959994 - L1PA15 LINE L1 -4 6812 5109 2481 11 0 14 chr4 110368353 110368640 -91959707 - AluYb8 SINE Alu -3 315 33 15625 211 23 16 chr4 110368640 110372464 -91955883 - L1PA15 LINE L1 -1707 5109 1224 2458 308 66 29 chr4 110372435 110373377 -91954970 - L1PA15 LINE L1 -5810 977 1 * 6372 240 42 60 chr4 110373378 110376073 -91952274 + L1 LINE L1 2753 5398 -748 28952 123 14 13 chr4 110376075 110380761 -91947586 + L1P LINE L1 667 5358 -788 931 167 28 0 chr4 110380761 110380938 -91947409 + L1MA1 LINE L1 6118 6302 0 5433 213 48 14 chr4 110380955 110383043 -91945304 + L1MC1 LINE L1 4154 6316 -17 250 276 9 19 chr4 110383044 110383149 -91945198 + (TA)n Simple_repeat Simple_repeat 2 105 0 24 32 0 0 chr4 110383385 110383416 -91944931 + AT_rich Low_complexity Low_complexity 1 31 0 24 77 0 0 chr4 110383464 110383516 -91944831 + AT_rich Low_complexity Low_complexity 1 52 0 23 33 0 0 chr4 110383590 110383620 -91944727 + AT_rich Low_complexity Low_complexity 1 30 0 324 297 20 27 chr4 110383998 110384146 -91944201 + L1ME LINE L1 5296 5442 -722 325 295 0 31 chr4 110384222 110384351 -91943996 + L1ME LINE L1 5505 5629 -492 2156 121 0 3 chr4 110384748 110385082 -91943265 + AluSx SINE Alu 1 333 0 221 325 15 42 chr4 110386851 110386952 -91941395 + MER5A DNA MER1_type 45 136 -42 268 291 202 41 chr4 110386974 110387266 -91941081 + L2 LINE L2 2140 2478 -836 1961 182 6 0 chr4 110388285 110388620 -91939727 + MER1B DNA MER1_type 1 337 0 1209 288 67 23 chr4 110388816 110389543 -91938804 - L1ME3 LINE L1 -283 6273 5521 24 32 0 0 chr4 110389622 110389653 -91938694 + AT_rich Low_complexity Low_complexity 1 31 0 337 275 12 0 chr4 110389800 110389880 -91938467 - L2 LINE L2 -4 3309 3229 787 295 147 39 chr4 110389904 110390100 -91938247 - L1ME3 LINE L1 -1319 5221 5048 381 22 0 0 chr4 110390100 110390146 -91938201 + (CA)n Simple_repeat Simple_repeat 2 47 0 787 295 147 39 chr4 110390146 110391066 -91937281 - L1ME3 LINE L1 -1492 5048 3984 2211 204 29 57 chr4 110391215 110391705 -91936642 - MER70B LTR ERVL -102 476 1 263 197 7 80 chr4 110391763 110391900 -91936447 + T-rich Low_complexity Low_complexity 6 132 0 569 307 80 7 chr4 110391917 110392366 -91935981 - L1ME3 LINE L1 -2970 3570 3089 454 358 80 7 chr4 110392471 110392773 -91935574 - L1ME3 LINE L1 -3582 2958 2635 854 0 95 0 chr4 110393207 110393333 -91935014 + CT-rich Low_complexity Low_complexity 5 142 0 2204 82 3 0 chr4 110393333 110393615 -91934732 - AluSp SINE Alu -30 283 1 456 323 99 42 chr4 110393742 110394202 -91934145 - L1ME3 LINE L1 -868 2033 1634 261 183 124 44 chr4 110394204 110394341 -91934006 - L1ME3 LINE L1 -5195 1335 1188 21 89 0 0 chr4 110395591 110395647 -91932700 + AT_rich Low_complexity Low_complexity 1 56 0 2272 168 26 2 chr4 110395805 110396223 -91932124 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr4 110396336 110396357 -91931990 + AT_rich Low_complexity Low_complexity 1 21 0 187 330 11 55 chr4 110397114 110397205 -91931142 - MIR SINE MIR -120 142 56 21 36 0 0 chr4 110397812 110397840 -91930507 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr4 110397940 110397979 -91930368 + AT_rich Low_complexity Low_complexity 1 39 0 326 322 166 0 chr4 110398268 110398467 -91929880 - MIR SINE MIR -13 249 18 327 166 0 23 chr4 110399080 110399297 -91929050 + AluJo SINE Alu 3 302 0 235 342 13 0 chr4 110399874 110399953 -91928394 - L2 LINE L2 -5 3267 3188 29 0 0 0 chr4 110400041 110400070 -91928277 + AT_rich Low_complexity Low_complexity 1 29 0 1309 243 35 68 chr4 110400424 110401167 -91927180 + L1 LINE L1 3735 4411 -1735 3797 186 70 18 chr4 110401168 110401598 -91926749 + L1MB8 LINE L1 5186 5592 -586 575 86 0 12 chr4 110401598 110401679 -91926668 + MADE1 DNA Mariner 1 80 0 3797 186 70 18 chr4 110401679 110402207 -91926140 + L1MB8 LINE L1 5592 6178 0 2628 328 162 11 chr4 110402593 110404501 -91923846 + L2 LINE L2 602 2796 -518 185 365 104 17 chr4 110407485 110407600 -91920747 + MIR SINE MIR 20 144 -64 1408 202 54 16 chr4 110407798 110408115 -91920232 - L1MB7 LINE L1 -13 6171 5843 23 33 0 0 chr4 110408443 110408473 -91919874 + AT_rich Low_complexity Low_complexity 1 30 0 280 212 15 0 chr4 110410402 110410468 -91917879 + L1 LINE L1 4408 4474 -1672 4505 190 61 4 chr4 110410612 110411093 -91917254 - L1MA7 LINE L1 -6 6285 5833 279 0 0 0 chr4 110411093 110411124 -91917223 + (TG)n Simple_repeat Simple_repeat 2 32 0 4505 190 61 4 chr4 110411124 110411838 -91916509 - L1MA7 LINE L1 -458 5833 5038 * 6624 189 29 7 chr4 110411829 110413216 -91915131 + L1MA7 LINE L1 3620 5036 -1110 675 314 147 13 chr4 110413520 110413976 -91914371 + L2 LINE L2 1756 2272 -1042 320 421 22 11 chr4 110414033 110414304 -91914043 + L2 LINE L2 2461 2734 -580 1659 246 48 19 chr4 110414312 110414796 -91913551 - MLT1D LTR MaLR -1 504 7 307 398 17 13 chr4 110414803 110415115 -91913232 + L2 LINE L2 2757 3068 -245 762 196 47 79 chr4 110415583 110415894 -91912453 + MER31B LTR ERV1 9 417 -49 320 337 12 0 chr4 110416110 110416196 -91912151 + L2 LINE L2 3225 3311 -2 198 0 0 0 chr4 110416813 110416835 -91911512 + (T)n Simple_repeat Simple_repeat 1 22 0 276 368 61 31 chr4 110417139 110417465 -91910882 + L2 LINE L2 1064 1399 -1915 1954 119 6 53 chr4 110418167 110418485 -91909862 - AluSx SINE Alu -9 303 1 200 156 0 22 chr4 110418551 110418596 -91909751 + L2 LINE L2 2220 2263 -1051 831 266 35 0 chr4 110418919 110419122 -91909225 + MER58A DNA MER1_type 1 210 -14 198 434 20 20 chr4 110419193 110419442 -91908905 - L2 LINE L2 -672 2642 2394 5221 119 50 11 chr4 110420151 110421169 -91907178 - L1PA13 LINE L1 0 6163 5110 2166 327 153 33 chr4 110421169 110423285 -91905062 - L2 LINE L2 -11 3302 923 367 333 29 10 chr4 110423299 110423503 -91904844 + L1MC3 LINE L1 1 208 -5837 1616 249 44 49 chr4 110423515 110423901 -91904446 + L1MC3 LINE L1 948 1329 -5235 381 22 0 0 chr4 110423901 110423947 -91904400 + (CA)n Simple_repeat Simple_repeat 2 47 0 1616 249 44 49 chr4 110423947 110424336 -91904011 + L1MC3 LINE L1 1329 1719 -4845 * 4950 166 45 11 chr4 110424321 110424829 -91903518 + L1MA9 LINE L1 5263 5752 -560 261 0 0 0 chr4 110424829 110424858 -91903489 + (TG)n Simple_repeat Simple_repeat 1 29 0 4950 166 45 11 chr4 110424858 110425364 -91902983 + L1MA9 LINE L1 5752 6312 0 567 256 108 51 chr4 110425403 110425755 -91902592 + L1MC3 LINE L1 1702 2084 -4491 * 638 264 99 20 chr4 110425752 110426153 -91902194 + L1MC3 LINE L1 2296 2764 -3947 2089 173 38 63 chr4 110426180 110426655 -91901692 + MER101 LTR ERV1 12 474 0 849 276 51 26 chr4 110426659 110427011 -91901336 + L1MC3 LINE L1 2863 3223 -3341 * 4877 257 40 35 chr4 110426996 110428977 -91899370 + L1MC3 LINE L1 3729 5720 -844 687 204 60 6 chr4 110428972 110429139 -91899208 + L1MC3 LINE L1 6097 6272 -1931 * 5784 101 36 9 chr4 110429137 110430092 -91898255 - L1PB1 LINE L1 -12 6139 5161 3070 238 22 5 chr4 110430085 110430861 -91897486 + L1MC3 LINE L1 6258 7046 -1157 * 338 292 44 9 chr4 110430858 110430971 -91897376 - L1MC3 LINE L1 -1078 6707 6591 * 254 160 0 0 chr4 110430971 110431021 -91897326 - LTR66 LTR ERVL -171 439 390 503 237 82 31 chr4 110431064 110431258 -91897089 + L1M4 LINE L1 5 208 -6334 * 4874 198 42 35 chr4 110431251 110432428 -91895919 + L1MC3 LINE L1 7018 8203 0 1475 159 78 4 chr4 110432560 110432831 -91895516 - MSTA LTR MaLR 0 428 138 247 410 8 0 chr4 110433275 110433392 -91894955 - LTR16A LTR ERVL -225 225 108 1632 263 93 102 chr4 110433531 110435009 -91893338 + L1M4c LINE L1 926 2390 -5073 3453 229 16 45 chr4 110435015 110435845 -91892502 + L1M4 LINE L1 22 827 -6738 2813 228 15 0 chr4 110435839 110436488 -91891859 + L1M4 LINE L1 3814 4472 -3093 * 2692 148 22 15 chr4 110436471 110437708 -91890639 + L1MA2 LINE L1 4920 6304 0 * 1191 259 71 55 chr4 110437717 110437789 -91890558 + L1M4c LINE L1 2468 2537 -5030 2312 65 3 17 chr4 110437789 110438082 -91890265 + AluY SINE Alu 3 291 -20 1191 259 71 55 chr4 110438082 110438867 -91889480 + L1M4c LINE L1 2537 3430 -4137 465 260 0 0 chr4 110438891 110438991 -91889356 + L1MB2 LINE L1 5688 5787 -384 1645 193 8 45 chr4 110438991 110439344 -91889003 - MER47A DNA MER2_type 0 366 27 1066 230 47 4 chr4 110439361 110439639 -91888708 + L1MB2 LINE L1 5804 6093 -78 353 162 0 0 chr4 110439638 110439706 -91888641 + L1P LINE L1 5266 5333 -823 * 5723 102 15 8 chr4 110439699 110440551 -91887796 + L1PB1 LINE L1 5280 6137 -14 2724 150 67 22 chr4 110440551 110441045 -91887302 - L1PB3 LINE L1 -133 6021 5506 1054 152 34 11 chr4 110441045 110441223 -91887124 + THE1B LTR MaLR 2 183 -181 758 119 8 8 chr4 110441232 110441358 -91886989 + L1PB3 LINE L1 6028 6153 -1 218 32 32 0 chr4 110442521 110442552 -91885795 + (ATG)n Simple_repeat Simple_repeat 1 32 0 265 339 61 9 chr4 110444118 110444233 -91884114 + MIR SINE MIR 10 130 -132 293 362 28 18 chr4 110444676 110444958 -91883389 + HsTC2 DNA Tc2 578 862 -1036 43130 42 4 3 chr4 110444972 110451116 -91877231 - L1PA4 LINE L1 -3 6152 4 906 301 47 31 chr4 110451575 110451897 -91876450 - LTR16A LTR ERVL -108 342 16 1081 224 75 22 chr4 110451990 110452312 -91876035 + L1MA10 LINE L1 5996 6334 0 746 294 26 38 chr4 110452805 110452878 -91875469 + MIR SINE MIR 1 73 -189 1954 181 59 33 chr4 110452878 110453299 -91875048 + MSTB1 LTR MaLR 1 432 0 746 294 26 38 chr4 110453299 110453490 -91874857 + MIR SINE MIR 73 262 0 346 317 92 64 chr4 110453868 110454480 -91873867 - L1MEc LINE L1 -5746 650 22 562 345 118 0 chr4 110454502 110454757 -91873590 + L2 LINE L2 1927 2211 -1103 1439 268 4 60 chr4 110454775 110455238 -91873109 + MLT2B1 LTR ERVL 44 480 -40 296 143 0 0 chr4 110455267 110455316 -91873031 + MLT2D LTR ERVL 366 414 0 585 302 115 22 chr4 110455317 110455595 -91872752 + L2 LINE L2 2225 2528 -786 1366 279 102 27 chr4 110455823 110456491 -91871856 - L1ME3 LINE L1 -22 6140 5424 2118 153 19 3 chr4 110456579 110456957 -91871390 + L1P LINE L1 2196 2579 -3567 10835 173 23 10 chr4 110456961 110459036 -91869311 + L1P LINE L1 3066 5167 -979 513 279 67 40 chr4 110459096 110459469 -91868878 - L1ME3 LINE L1 -1102 5044 4662 484 151 11 21 chr4 110459473 110459566 -91868781 + MLT2B2 LTR ERVL 422 513 -2 8744 192 34 8 chr4 110459651 110462347 -91866000 - L1PA15 LINE L1 -108 6057 3290 291 314 25 0 chr4 110462350 110462471 -91865876 + L1MD1 LINE L1 6092 6215 -27 22 0 0 0 chr4 110462515 110462537 -91865810 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr4 110462705 110462734 -91865613 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr4 110463943 110463975 -91864372 + AT_rich Low_complexity Low_complexity 1 32 0 37 90 0 0 chr4 110464001 110464101 -91864246 + AT_rich Low_complexity Low_complexity 1 100 0 994 199 0 0 chr4 110464249 110464425 -91863922 - FAM SINE Alu 0 49 1 185 343 0 0 chr4 110465025 110465095 -91863252 - MIR SINE MIR -44 218 149 382 287 121 19 chr4 110465484 110465641 -91862706 - MIR SINE MIR -56 206 34 189 178 0 0 chr4 110466493 110466538 -91861809 + (TG)n Simple_repeat Simple_repeat 1 45 0 312 311 59 17 chr4 110467589 110467708 -91860639 + L2 LINE L2 3149 3272 0 4579 159 81 170 chr4 110467842 110469718 -91858629 + MER52A LTR ERV1 1 1755 0 380 242 23 70 chr4 110470343 110470381 -91857966 - MER5C DNA MER1_type -202 122 84 2043 131 3 29 chr4 110470381 110470694 -91857653 - AluSq SINE Alu -5 308 4 380 242 23 70 chr4 110470694 110470783 -91857564 - MER5C DNA MER1_type -240 84 1 33 0 0 0 chr4 110471161 110471194 -91857153 + AT_rich Low_complexity Low_complexity 1 33 0 210 191 0 0 chr4 110471215 110471257 -91857090 + (TATG)n Simple_repeat Simple_repeat 3 44 0 289 353 79 19 chr4 110471272 110471589 -91856758 + L1MEd LINE L1 112 447 -5672 333 339 123 10 chr4 110471627 110471822 -91856525 + L1MEd LINE L1 497 713 -5406 1534 216 0 7 chr4 110473655 110473928 -91854419 + AluJb SINE Alu 12 282 -30 21 0 0 0 chr4 110473940 110473961 -91854386 + AT_rich Low_complexity Low_complexity 1 21 0 1039 297 61 30 chr4 110474368 110474829 -91853518 + L1MA3 LINE L1 18 492 -6371 338 356 80 4 chr4 110474962 110475187 -91853160 + L1MA3 LINE L1 729 970 -5893 259 295 38 59 chr4 110475509 110475933 -91852414 + L1MA3 LINE L1 764 1178 -5685 4176 241 42 25 chr4 110476022 110477659 -91850688 + L1MA3 LINE L1 1349 3086 -3776 2569 223 23 15 chr4 110478072 110478563 -91849784 + L1MA3 LINE L1 3044 3545 -3317 1557 130 153 0 chr4 110478563 110478817 -91849530 + AluSg SINE Alu 2 294 -6 2569 223 23 15 chr4 110478817 110479073 -91849274 + L1MA3 LINE L1 3545 3797 -3065 531 231 67 0 chr4 110479073 110479207 -91849140 + FLAM_C SINE Alu 1 143 0 1588 206 23 2 chr4 110479220 110479657 -91848690 + L1MA3 LINE L1 3797 4242 -2620 2767 107 0 0 chr4 110479658 110480040 -91848307 + MLT2A1 LTR ERVL 1 385 -59 180 0 0 0 chr4 110480040 110480060 -91848287 + (TA)n Simple_repeat Simple_repeat 2 21 0 620 208 7 7 chr4 110480112 110480261 -91848086 - L1 LINE L1 -3071 3075 2927 489 76 0 0 chr4 110480261 110480327 -91848020 + (TA)n Simple_repeat Simple_repeat 2 67 0 242 28 111 0 chr4 110480327 110480363 -91847984 + MLT2A1 LTR ERVL 405 444 0 8457 158 23 11 chr4 110480363 110483109 -91845238 + L1MA3 LINE L1 4239 7019 -2 1750 137 77 21 chr4 110483142 110483427 -91844920 + AluSx SINE Alu 1 301 -11 4013 130 48 1 chr4 110483632 110484316 -91844031 + L1PB4 LINE L1 5428 6143 -13 24 53 0 0 chr4 110484344 110484382 -91843965 + AT_rich Low_complexity Low_complexity 1 38 0 1075 209 34 49 chr4 110485369 110485802 -91842545 + Charlie5 DNA MER1_type 1 417 -2195 246 211 0 0 chr4 110485807 110485859 -91842488 - MLT1F1 LTR MaLR 0 567 516 646 250 0 0 chr4 110485894 110486018 -91842329 - FLAM_A SINE Alu -9 124 1 1148 201 169 5 chr4 110486024 110486412 -91841935 + L1M4 LINE L1 4759 5213 -933 552 258 79 11 chr4 110486508 110486686 -91841661 + MER58A DNA MER1_type 1 190 -34 528 229 27 33 chr4 110486748 110486971 -91841376 + L1MA10 LINE L1 5954 6334 0 513 249 39 0 chr4 110486974 110487155 -91841192 + Charlie5 DNA MER1_type 732 919 -1693 704 354 16 31 chr4 110487167 110487463 -91840884 + L1PA13 LINE L1 788 1078 -6496 1955 135 128 13 chr4 110487463 110487847 -91840500 + MSTA LTR MaLR 1 428 0 704 354 16 31 chr4 110487847 110487934 -91840413 + L1PA13 LINE L1 1078 1165 -6409 337 268 0 0 chr4 110488155 110488252 -91840095 + L1PA13 LINE L1 2086 2182 -5399 2883 250 36 14 chr4 110488485 110489632 -91838715 + L1PA13 LINE L1 2182 3351 -4233 * 3002 174 44 2 chr4 110489630 110490388 -91837959 + L1PA15 LINE L1 4992 5783 -382 678 80 90 0 chr4 110490388 110490485 -91837862 + L1PA10 LINE L1 6056 6164 -4 2507 118 7 32 chr4 110490493 110490899 -91837448 + L1PA15 LINE L1 5769 6164 -1 21 71 0 0 chr4 110490949 110490991 -91837356 + AT_rich Low_complexity Low_complexity 1 42 0 1186 213 53 15 chr4 110491011 110491405 -91836942 + Charlie5 DNA MER1_type 2211 2619 0 189 94 0 0 chr4 110493039 110493071 -91835276 + (T)n Simple_repeat Simple_repeat 1 32 0 306 326 70 23 chr4 110493620 110493835 -91834512 + Charlie8 DNA MER1_type 29 253 -2164 546 273 58 58 chr4 110494537 110494758 -91833589 + MLT1J LTR MaLR 2 225 -286 2046 163 102 0 chr4 110494758 110495150 -91833197 - MSTB1 LTR MaLR 0 432 1 546 273 58 58 chr4 110495150 110495206 -91833141 + MLT1J LTR MaLR 224 279 -232 217 341 0 0 chr4 110545704 110545786 -91782561 + (TATATG)n Simple_repeat Simple_repeat 2 83 0 244 317 106 49 chr4 110546327 110546469 -91781878 - L2 LINE L2 -2 3270 3121 539 345 74 26 chr4 110546664 110546974 -91781373 + L2 LINE L2 2579 2903 -411 780 155 16 0 chr4 110547076 110547205 -91781142 - FRAM SINE Alu -47 129 1 207 373 0 0 chr4 110547207 110547282 -91781065 + L2 LINE L2 2941 3015 -257 2140 100 40 0 chr4 110547346 110547525 -91780822 - AluY SINE Alu 0 311 114 244 44 67 0 chr4 110547525 110547570 -91780777 + T-rich Low_complexity Low_complexity 2 49 0 2140 100 40 0 chr4 110547570 110547689 -91780658 - AluY SINE Alu -197 114 1 2109 297 97 27 chr4 110547905 110548904 -91779443 - L2 LINE L2 -142 3171 2118 28 0 0 0 chr4 110549687 110549715 -91778632 + AT_rich Low_complexity Low_complexity 1 28 0 1616 85 48 22 chr4 110550336 110550608 -91777739 + L1PA13 LINE L1 5885 6163 0 21 71 0 0 chr4 110551744 110551786 -91776561 + AT_rich Low_complexity Low_complexity 1 42 0 180 77 0 0 chr4 110551923 110551949 -91776398 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr4 110552232 110552253 -91776094 + AT_rich Low_complexity Low_complexity 1 21 0 192 184 0 0 chr4 110553673 110553722 -91774625 + A-rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 110554976 110554997 -91773350 + AT_rich Low_complexity Low_complexity 1 21 0 213 178 0 0 chr4 110555683 110555728 -91772619 + T-rich Low_complexity Low_complexity 1 45 0 204 303 30 0 chr4 110558140 110558239 -91770108 + (CATATA)n Simple_repeat Simple_repeat 1 102 0 * 208 269 0 0 chr4 110558188 110558240 -91770107 + (TA)n Simple_repeat Simple_repeat 2 53 0 34 24 0 0 chr4 110559684 110559725 -91768622 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr4 110561009 110561039 -91767308 + AT_rich Low_complexity Low_complexity 1 30 0 28 61 0 0 chr4 110561228 110561277 -91767070 + AT_rich Low_complexity Low_complexity 1 49 0 230 221 0 12 chr4 110562466 110562552 -91765795 + (TA)n Simple_repeat Simple_repeat 1 85 0 532 171 0 16 chr4 110563252 110563375 -91764972 + CT-rich Low_complexity Low_complexity 4 124 0 21 0 0 0 chr4 110563496 110563517 -91764830 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 110564079 110564103 -91764244 + AT_rich Low_complexity Low_complexity 1 24 0 666 167 0 0 chr4 110564352 110564484 -91763863 + CT-rich Low_complexity Low_complexity 1 132 0 1932 153 0 10 chr4 110564781 110565089 -91763258 + AluSx SINE Alu 1 305 -7 215 200 0 33 chr4 110565200 110565260 -91763087 + (TATG)n Simple_repeat Simple_repeat 1 58 0 673 241 38 69 chr4 110565518 110565779 -91762568 + MER112 DNA MER1_type 2 254 -2 24 53 0 0 chr4 110566755 110566793 -91761554 + AT_rich Low_complexity Low_complexity 1 38 0 257 194 15 30 chr4 110567970 110568037 -91760310 - L1MA8 LINE L1 -4 6287 6222 264 59 0 0 chr4 110573045 110573079 -91755268 + (CCG)n Simple_repeat Simple_repeat 1 34 0 237 98 0 0 chr4 110573094 110573135 -91755212 + (GGA)n Simple_repeat Simple_repeat 2 42 0 454 235 10 27 chr4 110573293 110573875 -91754472 + CT-rich Low_complexity Low_complexity 1 572 0 200 182 0 0 chr4 110574770 110574803 -91753544 + CT-rich Low_complexity Low_complexity 3 35 0 23 0 0 0 chr4 110575777 110575800 -91752547 + AT_rich Low_complexity Low_complexity 1 23 0 2292 115 36 36 chr4 110576865 110577229 -91751118 + THE1B LTR MaLR 1 364 0 321 109 0 0 chr4 110577267 110577313 -91751034 + MADE1 DNA Mariner 1 46 -34 193 253 13 76 chr4 110577380 110577459 -91750888 - L2 LINE L2 -91 3222 3149 338 282 5 87 chr4 110577563 110577758 -91750589 - LTR33A LTR ERVL -5 518 340 296 291 80 40 chr4 110577986 110578161 -91750186 - LTR50 LTR ERVL -593 202 21 23 54 0 0 chr4 110578310 110578347 -91750000 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 110578613 110578634 -91749713 + AT_rich Low_complexity Low_complexity 1 21 0 2685 102 0 3 chr4 110579765 110580137 -91748210 - THE1C LTR MaLR 0 375 5 2522 95 17 0 chr4 110581719 110582067 -91746280 - L1PA10 LINE L1 -11 6157 5804 1117 116 6 0 chr4 110582067 110582239 -91746108 + L1P LINE L1 5190 5362 -784 396 309 1 10 chr4 110583240 110583427 -91744920 + MLT1J LTR MaLR 29 212 -197 245 331 107 75 chr4 110583615 110583999 -91744348 + L2 LINE L2 2893 3288 -25 451 278 12 58 chr4 110584062 110584235 -91744112 - L2 LINE L2 0 3313 3149 21 0 0 0 chr4 110585642 110585663 -91742684 + AT_rich Low_complexity Low_complexity 1 21 0 2872 143 19 37 chr4 110585729 110585830 -91742517 + L1MA8 LINE L1 5217 5318 -973 1486 176 55 17 chr4 110585830 110586120 -91742227 + AluJb SINE Alu 1 301 -11 2872 143 19 37 chr4 110586120 110586589 -91741758 + L1MA8 LINE L1 5318 5789 -502 227 190 17 17 chr4 110586594 110586652 -91741695 - LTR66 LTR ERVL -171 439 382 212 0 0 35 chr4 110586652 110586663 -91741684 + (GA)n Simple_repeat Simple_repeat 2 12 -17 2047 173 57 19 chr4 110586663 110587136 -91741211 + L1MA8 LINE L1 5797 6287 -4 212 0 0 35 chr4 110587136 110587153 -91741194 + (GA)n Simple_repeat Simple_repeat 12 29 0 1219 48 0 0 chr4 110587724 110587871 -91740476 - L1PA3 LINE L1 -4 6151 6005 24520 27 0 0 chr4 110587871 110591210 -91737137 + L1P1 LINE L1 2440 5778 -377 213 328 62 0 chr4 110591250 110591314 -91737033 + MER91A DNA MER1_type 117 184 -12 24 0 0 0 chr4 110591711 110591735 -91736612 + AT_rich Low_complexity Low_complexity 1 24 0 788 325 79 21 chr4 110592233 110592612 -91735735 + L2 LINE L2 883 1283 -2031 456 274 102 27 chr4 110592713 110592899 -91735448 + L2 LINE L2 1276 1475 -1839 336 334 74 29 chr4 110593779 110593985 -91734362 + MIR SINE MIR 19 230 -32 241 326 31 20 chr4 110594066 110594164 -91734183 + L2 LINE L2 2174 2272 -1042 862 262 102 43 chr4 110594957 110595377 -91732970 - LTR33 LTR ERVL -20 501 57 375 323 77 73 chr4 110596432 110596692 -91731655 + MIR SINE MIR 2 262 0 2158 113 3 0 chr4 110596803 110597103 -91731244 + AluSq SINE Alu 1 301 -12 41 0 0 0 chr4 110597103 110597144 -91731203 + AT_rich Low_complexity Low_complexity 1 41 0 180 228 0 105 chr4 110597461 110597518 -91730829 + L2 LINE L2 3263 3313 0 205 104 0 62 chr4 110597854 110597902 -91730445 + (TTTTTA)n Simple_repeat Simple_repeat 3 47 0 655 361 45 0 chr4 110598454 110598698 -91729649 - MIR SINE MIR -6 256 2 189 314 0 0 chr4 110599050 110599101 -91729246 + L2 LINE L2 3228 3278 -35 315 306 16 48 chr4 110599285 110599409 -91728938 - L2 LINE L2 -16 3256 3137 503 291 103 19 chr4 110600053 110600266 -91728081 - MIR SINE MIR 0 262 32 2000 175 216 27 chr4 110600269 110600697 -91727650 - LTR48 LTR ERV1 0 787 441 258 32 0 0 chr4 110600697 110600728 -91727619 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2000 175 216 27 chr4 110600728 110600961 -91727386 - LTR48 LTR ERV1 -346 441 1 394 308 87 20 chr4 110601130 110601325 -91727022 - MIR SINE MIR -49 213 6 2070 113 3 10 chr4 110601375 110601852 -91726495 + AluY SINE Alu 1 475 0 1899 124 0 11 chr4 110601864 110602175 -91726172 + AluSx SINE Alu 3 310 0 910 307 131 15 chr4 110602177 110602574 -91725773 + LTR16B LTR ERVL 18 460 -4 365 332 80 35 chr4 110602819 110603105 -91725242 + HERV16 LTR ERVL 320 618 -4378 476 290 0 70 chr4 110603141 110603327 -91725020 + HERV16 LTR ERVL 858 1030 -3966 2306 85 0 0 chr4 110603366 110603660 -91724687 - AluY SINE Alu -17 294 1 469 238 185 21 chr4 110603670 110603859 -91724488 + LTR16B LTR ERVL 245 464 0 23 33 0 0 chr4 110604636 110604666 -91723681 + AT_rich Low_complexity Low_complexity 1 30 0 208 135 0 0 chr4 110605808 110605845 -91722502 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 928 320 84 29 chr4 110605908 110606454 -91721893 + MLT1K LTR MaLR 2 577 -11 566 231 98 22 chr4 110606879 110607104 -91721243 - L1MCc LINE L1 -5232 1709 1468 378 242 54 20 chr4 110607155 110607318 -91721029 - L1MCc LINE L1 -5889 533 22 772 325 47 10 chr4 110607386 110607792 -91720555 + Tigger8 DNA MER2_type 158 578 -88 32 43 0 0 chr4 110609000 110609046 -91719301 + AT_rich Low_complexity Low_complexity 1 46 0 22 56 0 0 chr4 110609122 110609158 -91719189 + AT_rich Low_complexity Low_complexity 1 36 0 30 45 0 0 chr4 110609670 110609714 -91718633 + AT_rich Low_complexity Low_complexity 1 44 0 2054 111 3 38 chr4 110609796 110610111 -91718236 + AluSx SINE Alu 1 304 -8 24 32 0 0 chr4 110610919 110610950 -91717397 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 110612876 110612898 -91715449 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 110613450 110613480 -91714867 + AT_rich Low_complexity Low_complexity 1 30 0 195 333 0 18 chr4 110615064 110615121 -91713226 + MER5A DNA MER1_type 122 177 -12 282 364 85 17 chr4 110615888 110616182 -91712165 + L1MEc LINE L1 91 404 -5992 647 262 43 0 chr4 110616563 110616727 -91711620 + MER58A DNA MER1_type 37 207 -17 1810 291 61 35 chr4 110616751 110618839 -91709508 + L1MEc LINE L1 591 2860 -3355 716 235 20 95 chr4 110618916 110619222 -91709125 + L1MEc LINE L1 4113 4395 -1820 21 36 0 0 chr4 110619416 110619444 -91708903 + AT_rich Low_complexity Low_complexity 1 28 0 1062 110 0 19 chr4 110619818 110619997 -91708350 + AluY SINE Alu 129 304 0 5160 177 39 21 chr4 110620680 110621720 -91706627 - L1MC1 LINE L1 0 6751 5694 350 242 99 0 chr4 110621736 110621827 -91706520 + L1MEc LINE L1 4356 4455 -1760 332 240 62 10 chr4 110621835 110621931 -91706416 - L1MC1 LINE L1 -1556 5008 4908 731 213 6 22 chr4 110622035 110622218 -91706129 - L1MC1 LINE L1 -5245 1319 1140 1488 107 5 0 chr4 110622220 110622436 -91705911 + L1MC1 LINE L1 2374 2590 -4991 * 3401 223 37 76 chr4 110622432 110623541 -91704806 - L1MC1 LINE L1 -4971 2094 1029 2270 84 0 3 chr4 110623959 110624280 -91704067 - AluY SINE Alu 0 320 1 285 298 66 16 chr4 110624610 110624731 -91703616 - MLT1J LTR MaLR -72 439 313 625 303 9 24 chr4 110624757 110624968 -91703379 - MLT1J LTR MaLR -295 216 9 239 333 26 0 chr4 110624974 110625052 -91703295 + MIR SINE MIR 68 147 -115 24 77 0 0 chr4 110625562 110625614 -91702733 + AT_rich Low_complexity Low_complexity 1 52 0 26 30 0 0 chr4 110628992 110629025 -91699322 + AT_rich Low_complexity Low_complexity 1 33 0 1053 304 72 41 chr4 110631911 110632596 -91695751 - L2 LINE L2 0 3313 2464 29 28 0 0 chr4 110633092 110633128 -91695219 + AT_rich Low_complexity Low_complexity 1 36 0 27 49 0 0 chr4 110633489 110633530 -91694817 + AT_rich Low_complexity Low_complexity 1 41 0 593 294 47 39 chr4 110635304 110635559 -91692788 - MIR SINE MIR -5 257 1 208 173 39 19 chr4 110635591 110635643 -91692704 + (TATAA)n Simple_repeat Simple_repeat 1 53 0 477 319 74 63 chr4 110635696 110636277 -91692070 + L2 LINE L2 2657 3313 0 243 328 126 22 chr4 110636451 110636634 -91691713 + MIR SINE MIR 40 241 -21 24 53 0 0 chr4 110637752 110637790 -91690557 + AT_rich Low_complexity Low_complexity 1 38 0 218 189 0 0 chr4 110638665 110638702 -91689645 + CT-rich Low_complexity Low_complexity 2 38 0 1373 180 82 19 chr4 110640637 110640938 -91687409 - AluJo SINE Alu 0 318 1 25 0 0 0 chr4 110641891 110641916 -91686431 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr4 110641994 110642018 -91686329 + AT_rich Low_complexity Low_complexity 1 24 0 219 250 0 0 chr4 110643799 110643851 -91684496 + CT-rich Low_complexity Low_complexity 2 53 0 208 130 0 65 chr4 110643908 110643954 -91684393 + (TGGGGG)n Simple_repeat Simple_repeat 2 44 0 2122 119 0 26 chr4 110644379 110644681 -91683666 - AluSg SINE Alu -16 294 1 989 320 69 14 chr4 110644904 110645267 -91683080 - LTR16A LTR ERVL -8 442 60 180 77 0 0 chr4 110645576 110645602 -91682745 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 533 323 156 23 chr4 110646154 110646643 -91681704 - L2 LINE L2 -15 3298 2751 272 194 31 39 chr4 110646653 110646782 -91681565 + HAL1 LINE L1 973 1100 -1407 * 2327 166 105 43 chr4 110646774 110647379 -91680968 + L1MA9 LINE L1 5156 5933 -358 22184 44 18 0 chr4 110647379 110650905 -91677442 + L1PA5 LINE L1 2605 6146 -8 2327 166 105 43 chr4 110650905 110651282 -91677065 + L1MA9 LINE L1 5933 6285 -6 321 258 154 74 chr4 110651278 110651713 -91676634 + HAL1 LINE L1 1075 1544 -963 * 257 266 16 0 chr4 110651715 110651779 -91676568 - MLT1J2 LTR MaLR 0 450 386 1039 285 101 20 chr4 110652074 110652887 -91675460 + HAL1 LINE L1 1544 2459 -48 2141 189 20 52 chr4 110653616 110653859 -91674488 - MER44D DNA MER2_type -1882 605 326 3273 31 0 0 chr4 110653859 110654243 -91674104 + L1PA3 LINE L1 5767 6150 -5 2141 189 20 52 chr4 110654243 110654444 -91673903 - MER44D DNA MER2_type -2161 326 120 2250 132 8 19 chr4 110654615 110654994 -91673353 - THE1C LTR MaLR 0 375 1 25 65 0 0 chr4 110655247 110655293 -91673054 + AT_rich Low_complexity Low_complexity 1 46 0 578 175 94 50 chr4 110656907 110657067 -91671280 - MLT1A2 LTR MaLR -207 167 1 1795 271 79 30 chr4 110657097 110657466 -91670881 - L1ME3A LINE L1 -59 6111 5762 1779 126 0 0 chr4 110657466 110657736 -91670611 - L1PA13 LINE L1 -3 6160 5891 1795 271 79 30 chr4 110657736 110659282 -91669065 - L1ME3A LINE L1 -408 5762 4055 363 251 153 12 chr4 110659313 110659476 -91668871 - L1ME3A LINE L1 -2167 3979 3794 233 291 39 0 chr4 110659552 110659655 -91668692 - L1ME3A LINE L1 -2497 3649 3543 365 120 0 13 chr4 110660290 110660365 -91667982 + (CCG)n Simple_repeat Simple_repeat 2 75 0 183 42 0 0 chr4 110660435 110660459 -91667888 + (CGG)n Simple_repeat Simple_repeat 3 26 0 219 302 21 0 chr4 110660739 110660835 -91667512 + G-rich Low_complexity Low_complexity 4 101 0 21 36 0 0 chr4 110661960 110661988 -91666359 + AT_rich Low_complexity Low_complexity 1 28 0 219 238 0 16 chr4 110663608 110663671 -91664676 + GA-rich Low_complexity Low_complexity 2 63 0 208 53 53 0 chr4 110663795 110663833 -91664514 + CT-rich Low_complexity Low_complexity 1 40 0 210 118 0 0 chr4 110664258 110664292 -91664055 + (TG)n Simple_repeat Simple_repeat 2 35 0 552 341 53 12 chr4 110665938 110666184 -91662163 - MIR SINE MIR 0 262 7 402 317 116 47 chr4 110666869 110667276 -91661071 - MLT1J1 LTR MaLR -10 436 2 23 0 0 0 chr4 110668100 110668123 -91660224 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr4 110668314 110668357 -91659990 + AT_rich Low_complexity Low_complexity 1 43 0 549 256 225 6 chr4 110671487 110671647 -91656700 + MER91A DNA MER1_type 1 195 -1 587 304 91 62 chr4 110672541 110673005 -91655342 - MLT1L LTR MaLR -133 482 6 222 213 0 21 chr4 110674043 110674090 -91654257 - L2 LINE L2 -79 3234 3189 180 0 0 0 chr4 110675006 110675026 -91653321 + (A)n Simple_repeat Simple_repeat 1 20 0 3220 284 214 38 chr4 110675481 110677575 -91650772 + L2 LINE L2 19 2481 -833 2660 153 37 20 chr4 110677575 110678031 -91650316 + MLT2B1 LTR ERVL 1 464 -56 205 330 114 0 chr4 110678608 110678696 -91649651 - MIR SINE MIR -75 187 90 23 97 0 0 chr4 110678850 110678922 -91649425 + AT_rich Low_complexity Low_complexity 1 72 0 355 348 77 39 chr4 110679495 110679676 -91648671 + L2 LINE L2 2899 3086 -227 728 298 67 30 chr4 110679761 110680133 -91648214 + LTR16A LTR ERVL 18 403 -47 3056 287 84 23 chr4 110680517 110682624 -91645723 + HERV16 LTR ERVL 389 2687 -2309 226 280 60 30 chr4 110682745 110682845 -91645502 + LTR16A LTR ERVL 335 437 -13 8078 50 0 0 chr4 110682901 110684680 -91643667 - L1PA5 LINE L1 0 6154 4378 1591 21 0 0 chr4 110684680 110684867 -91643480 + L1PA5 LINE L1 4189 4375 -1771 360 285 21 35 chr4 110684873 110685017 -91643330 + L2 LINE L2 3168 3309 -4 1543 173 47 0 chr4 110685213 110685491 -91642856 + AluSx SINE Alu 1 291 -21 1025 304 89 14 chr4 110685846 110686260 -91642087 + LTR16A LTR ERVL 1 445 -5 239 321 53 16 chr4 110686265 110686452 -91641895 - L1ME LINE L1 -203 5918 5725 367 322 109 6 chr4 110686883 110687066 -91641281 + MIR SINE MIR 48 249 -13 202 188 0 0 chr4 110687107 110687139 -91641208 + (TG)n Simple_repeat Simple_repeat 2 33 0 9278 100 11 2 chr4 110687235 110688508 -91639839 - HSMAR1 DNA Mariner 0 1287 3 214 70 116 0 chr4 110688682 110688725 -91639622 + A-rich Low_complexity Low_complexity 3 50 0 247 351 29 23 chr4 110689553 110689724 -91638623 + MER20B DNA MER1_type 2 173 -610 5329 41 1 8 chr4 110691029 110691688 -91636659 - L1PA4 LINE L1 0 6155 5501 207 301 233 8 chr4 110692021 110692154 -91636193 + MIR3 SINE MIR 36 198 -10 1488 316 148 37 chr4 110692515 110694364 -91633983 + L2 LINE L2 1255 3309 -4 314 281 75 34 chr4 110694468 110694614 -91633733 + L2 LINE L2 2256 2407 -907 1627 179 3 14 chr4 110694931 110695243 -91633104 - AluJo SINE Alu 0 309 1 219 139 0 0 chr4 110695545 110695581 -91632766 + (TATATG)n Simple_repeat Simple_repeat 5 40 0 4402 95 72 23 chr4 110695934 110696639 -91631708 - L1PA11 LINE L1 0 6174 5435 1044 263 123 33 chr4 110696920 110697342 -91631005 - LTR16B LTR ERVL -2 462 3 386 297 81 22 chr4 110697714 110697936 -91630411 - MLT1H LTR MaLR -314 235 1 196 237 51 17 chr4 110697950 110698009 -91630338 - L2 LINE L2 -71 3242 3182 400 336 116 39 chr4 110698020 110698461 -91629886 - L2 LINE L2 -1047 2267 1793 482 344 49 0 chr4 110698772 110698996 -91629351 - MIR SINE MIR -7 255 21 29 70 0 0 chr4 110700836 110700893 -91627454 + AT_rich Low_complexity Low_complexity 1 57 0 234 0 0 0 chr4 110701339 110701365 -91626982 + (CA)n Simple_repeat Simple_repeat 2 27 0 1015 158 0 0 chr4 110703364 110703516 -91624831 + AluSg/x SINE Alu 140 291 -21 24 0 0 0 chr4 110703559 110703583 -91624764 + AT_rich Low_complexity Low_complexity 1 24 0 1365 174 19 11 chr4 110703604 110703869 -91624478 + L1 LINE L1 4677 4943 -1203 4999 163 41 14 chr4 110703876 110705566 -91622781 - L1MA6 LINE L1 -143 6157 4410 2193 94 3 0 chr4 110705566 110705854 -91622493 - AluSx SINE Alu 0 312 24 4999 163 41 14 chr4 110705854 110706013 -91622334 - L1MA6 LINE L1 -1890 4410 4257 407 326 21 63 chr4 110706027 110706312 -91622035 - L1ME4a LINE L1 -287 5834 5562 231 181 78 43 chr4 110706357 110706473 -91621874 + (TTTAA)n Simple_repeat Simple_repeat 1 120 0 521 207 0 0 chr4 110706655 110706766 -91621581 - L1PB4 LINE L1 -1 6155 6045 317 237 161 25 chr4 110707053 110707171 -91621176 - L2 LINE L2 0 3313 3180 387 0 0 0 chr4 110707249 110707292 -91621055 + (TG)n Simple_repeat Simple_repeat 2 44 0 1730 238 113 6 chr4 110707332 110707811 -91620536 - L2 LINE L2 -1974 1340 811 249 246 203 0 chr4 110707811 110707880 -91620467 + MER96 DNA MER1_type? 91 173 -2 667 290 118 4 chr4 110707885 110708123 -91620224 - L2 LINE L2 -2611 703 439 11058 100 9 2 chr4 110708729 110711121 -91617226 - L1PA7 LINE L1 0 6154 3747 1793 92 15 0 chr4 110711123 110711385 -91616962 + L1P3 LINE L1 1364 1629 -4832 * 6604 97 0 5 chr4 110711376 110712319 -91616028 + L1P3 LINE L1 1841 2778 -3683 37 39 0 0 chr4 110712398 110712449 -91615898 + AT_rich Low_complexity Low_complexity 1 51 0 29 28 0 0 chr4 110712906 110712942 -91615405 + AT_rich Low_complexity Low_complexity 1 36 0 241 329 126 68 chr4 110713470 110713850 -91614497 + L2 LINE L2 1699 2100 -1214 541 265 120 14 chr4 110713909 110714260 -91614087 - L1ME4a LINE L1 -3 6118 5731 353 315 81 51 chr4 110714398 110714671 -91613676 - HAL1b LINE L1 -791 557 277 421 340 13 19 chr4 110714989 110715148 -91613199 - MIR SINE MIR -73 189 32 22 35 0 0 chr4 110715646 110715675 -91612672 + AT_rich Low_complexity Low_complexity 1 29 0 1040 286 41 3 chr4 110715969 110716259 -91612088 - LTR40b LTR ERVL -157 305 5 217 148 12 49 chr4 110716916 110716997 -91611350 + (TA)n Simple_repeat Simple_repeat 2 79 0 298 220 52 35 chr4 110717013 110717186 -91611161 + (TA)n Simple_repeat Simple_repeat 2 177 0 290 326 28 14 chr4 110719567 110719711 -91608636 + L3 LINE CR1 584 729 -848 1120 212 183 70 chr4 110721448 110721891 -91606456 - MLT1H LTR MaLR 0 549 57 1641 258 126 8 chr4 110721894 110722457 -91605890 - MLT1G LTR MaLR 0 590 5 256 273 105 105 chr4 110722462 110722671 -91605676 - MLT1G-int LTR MaLR -1 1370 1162 445 257 20 0 chr4 110722906 110723007 -91605340 - MLT1H LTR MaLR -492 103 1 1365 304 108 5 chr4 110723093 110723892 -91604455 - L2 LINE L2 -13 3300 2424 316 270 72 27 chr4 110725827 110725938 -91602409 + L2 LINE L2 3192 3307 -6 225 94 0 0 chr4 110725939 110725971 -91602376 + (TGGA)n Simple_repeat Simple_repeat 1 32 0 182 314 128 0 chr4 110726089 110726175 -91602172 + MIR3 SINE MIR 110 206 -2 364 296 26 46 chr4 110726272 110726461 -91601886 - MIR SINE MIR -48 214 34 376 319 37 30 chr4 110727329 110727464 -91600883 - L2 LINE L2 -27 3245 3110 * 769 282 16 49 chr4 110727448 110727693 -91600654 - MIR SINE MIR 0 262 26 286 297 122 27 chr4 110727860 110728008 -91600339 + MIR SINE MIR 101 262 0 255 300 65 111 chr4 110728059 110728366 -91599981 - L2 LINE L2 -173 3099 2807 2637 137 83 21 chr4 110728785 110729303 -91599044 - L1PA16 LINE L1 0 6166 5617 202 195 0 0 chr4 110729359 110729400 -91598947 + (TG)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr4 110730384 110730405 -91597942 + AT_rich Low_complexity Low_complexity 1 21 0 253 385 61 8 chr4 110730460 110730707 -91597640 - L3 LINE CR1 -807 770 511 28776 121 14 65 chr4 110731015 110737497 -91590850 - L1PA7 LINE L1 0 6154 13 1152 94 0 0 chr4 110737515 110737664 -91590683 - AluSp/q SINE Alu -5 308 160 246 229 138 9 chr4 110738128 110738237 -91590110 + MLT1L LTR MaLR 157 279 -336 279 265 91 71 chr4 110738323 110738576 -91589771 + MLT1K LTR MaLR 326 583 -5 403 244 0 0 chr4 110738743 110738825 -91589522 - MIR SINE MIR -166 96 15 192 97 0 0 chr4 110738909 110738940 -91589407 + (GA)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr4 110739113 110739135 -91589212 + AT_rich Low_complexity Low_complexity 1 22 0 468 88 0 121 chr4 110739318 110739409 -91588938 - MADE1 DNA Mariner 0 80 1 711 94 16 8 chr4 110739409 110739537 -91588810 + (TCTA)n Simple_repeat Simple_repeat 1 129 0 323 303 72 53 chr4 110739860 110740012 -91588335 + MIR SINE MIR 32 186 -76 529 228 232 82 chr4 110740343 110740795 -91587552 + LTR33A LTR ERVL 2 521 -2 240 352 0 0 chr4 110740857 110740945 -91587402 - Charlie8 DNA MER1_type -2197 220 133 225 349 55 18 chr4 110741309 110741418 -91586929 - MIR SINE MIR -79 129 17 305 169 56 14 chr4 110742024 110742095 -91586252 - MIR SINE MIR -57 205 132 2010 156 28 57 chr4 110742100 110742670 -91585677 - MLT2A2 LTR ERVL -4 550 1 368 287 10 0 chr4 110742670 110742771 -91585576 - MIR SINE MIR -127 135 34 243 316 154 26 chr4 110743087 110743170 -91585177 - MIR SINE MIR -87 175 78 781 257 16 0 chr4 110743170 110743353 -91584994 + MER5A DNA MER1_type 2 187 -2 195 100 0 0 chr4 110745588 110745618 -91582729 + (TG)n Simple_repeat Simple_repeat 1 30 0 677 254 12 82 chr4 110746772 110747016 -91581331 - LTR33 LTR ERVL -286 235 9 303 237 53 122 chr4 110747416 110747547 -91580800 - MLT1H LTR MaLR -18 531 410 470 274 100 22 chr4 110747613 110747843 -91580504 - MLT1H LTR MaLR -297 252 5 317 299 108 36 chr4 110749629 110749880 -91578467 - MLT1H LTR MaLR -242 307 39 2089 108 3 26 chr4 110750126 110750431 -91577916 + AluSc SINE Alu 1 298 -11 709 141 124 54 chr4 110750495 110750680 -91577667 + pTR5 LTR ERV1 741 938 -1500 3846 124 46 30 chr4 110750792 110751636 -91576711 + pTR5 LTR ERV1 848 2021 -417 322 235 31 20 chr4 110751640 110751738 -91576609 + LTR30 LTR ERV1 544 642 -80 1480 126 5 5 chr4 110751741 110751964 -91576383 + pTR5 LTR ERV1 172 394 -2044 689 231 89 0 chr4 110752233 110752458 -91575889 + L1M4 LINE L1 4398 4642 -1504 212 243 214 0 chr4 110752485 110752555 -91575792 + MIR SINE MIR 3 87 -175 338 260 62 10 chr4 110752780 110752876 -91575471 + MIR SINE MIR 158 258 -4 1053 307 37 43 chr4 110753065 110753528 -91574819 - MLT2F LTR ERVL -2 661 202 211 310 131 65 chr4 110753719 110753948 -91574399 - MIR SINE MIR -15 247 4 25 0 0 0 chr4 110753972 110753997 -91574350 + AT_rich Low_complexity Low_complexity 1 25 0 216 373 0 0 chr4 110754844 110754903 -91573444 - L2 LINE L2 -2 3270 3212 576 255 88 95 chr4 110755692 110756092 -91572255 - HAL1 LINE L1 -36 2471 2075 1031 270 35 27 chr4 110756127 110756494 -91571853 - HAL1 LINE L1 -710 1797 1428 662 298 111 46 chr4 110756697 110757328 -91571019 - HAL1 LINE L1 -1334 1173 502 261 57 0 0 chr4 110758318 110758353 -91569994 + (TC)n Simple_repeat Simple_repeat 1 35 0 220 315 45 0 chr4 110759054 110759143 -91569204 + MIR SINE MIR 98 190 -72 518 231 112 0 chr4 110759547 110759681 -91568666 - MIR SINE MIR -1 261 113 340 267 17 43 chr4 110759792 110759908 -91568439 - L3 LINE CR1 -5 1572 1460 249 33 0 0 chr4 110761236 110761266 -91567081 + (CA)n Simple_repeat Simple_repeat 1 30 0 270 266 43 54 chr4 110764991 110765108 -91563239 + MIR SINE MIR 40 153 -67 1538 145 107 13 chr4 110765263 110765573 -91562774 + MER44D DNA MER2_type 1 609 0 35 88 0 0 chr4 110766036 110766127 -91562220 + AT_rich Low_complexity Low_complexity 1 91 0 237 105 26 0 chr4 110766755 110766793 -91561554 - MLT1A1 LTR MaLR 0 365 327 1128 166 5 40 chr4 110766793 110766992 -91561355 + AluJo SINE Alu 40 231 -81 187 348 25 76 chr4 110766993 110767111 -91561236 - MIR SINE MIR -57 151 40 23 0 0 0 chr4 110767313 110767336 -91561011 + AT_rich Low_complexity Low_complexity 1 23 0 236 277 153 15 chr4 110767633 110767770 -91560577 + MIR SINE MIR 9 164 -98 23 0 0 0 chr4 110767858 110767881 -91560466 + AT_rich Low_complexity Low_complexity 1 23 0 5250 217 31 76 chr4 110767881 110768004 -91560343 - L1MA9 LINE L1 -22 6178 6051 1598 137 78 70 chr4 110768004 110768376 -91559971 + THE1C LTR MaLR 1 375 0 381 22 0 0 chr4 110768380 110768426 -91559921 + (TG)n Simple_repeat Simple_repeat 2 47 0 5250 217 31 76 chr4 110768426 110769249 -91559098 - L1MA9 LINE L1 -152 6048 5190 2054 148 0 0 chr4 110769249 110769560 -91558787 - AluSx SINE Alu -1 311 1 5250 217 31 76 chr4 110769560 110771048 -91557299 - L1MA9 LINE L1 -1010 5190 3637 1632 195 3 13 chr4 110771048 110771361 -91556986 - AluJo SINE Alu -2 310 1 5250 217 31 76 chr4 110771361 110772959 -91555388 - L1MA9 LINE L1 -2563 3637 2509 2352 90 0 3 chr4 110772959 110773260 -91555087 + AluY SINE Alu 1 300 -11 5250 217 31 76 chr4 110773260 110773428 -91554919 - L1MA9 LINE L1 -3691 2509 2335 336 200 0 0 chr4 110773428 110773498 -91554849 + (TA)n Simple_repeat Simple_repeat 2 71 0 229 149 0 0 chr4 110773498 110773545 -91554802 + LTR66 LTR ERVL 398 444 -166 2541 279 75 15 chr4 110773547 110775377 -91552970 - L1MA9 LINE L1 -4253 1782 12 1184 221 13 96 chr4 110775630 110776028 -91552319 - MLT1A1 LTR MaLR 0 365 1 268 171 40 79 chr4 110776205 110776281 -91552066 + L3 LINE CR1 1203 1275 -302 774 271 80 91 chr4 110776282 110776844 -91551503 - LTR67 LTR ERVL 0 557 2 280 318 83 32 chr4 110776851 110777068 -91551279 + L3 LINE CR1 1275 1502 -75 263 207 26 43 chr4 110777369 110777485 -91550862 + (TA)n Simple_repeat Simple_repeat 2 115 0 4052 190 18 8 chr4 110777748 110778580 -91549767 - Tigger1 DNA MER2_type 0 2418 1579 15074 167 22 19 chr4 110778597 110780888 -91547459 - L1MA2 LINE L1 -4 7719 5437 2179 98 0 3 chr4 110780888 110781201 -91547146 - AluY SINE Alu 0 312 1 15074 167 22 19 chr4 110781201 110785960 -91542387 - L1MA2 LINE L1 -2286 5437 13 8742 149 56 9 chr4 110785965 110787470 -91540877 - Tigger1 DNA MER2_type -842 1576 2 271 371 62 6 chr4 110787471 110787649 -91540698 - MIR SINE MIR -62 200 13 26 50 0 0 chr4 110788468 110788508 -91539839 + AT_rich Low_complexity Low_complexity 1 40 0 586 351 16 16 chr4 110788694 110788942 -91539405 + HERV16 LTR ERVL 1251 1498 -3498 515 353 24 56 chr4 110788999 110789220 -91539127 + HERV16 LTR ERVL 1598 1824 -3268 2065 107 101 18 chr4 110789220 110789556 -91538791 - THE1B LTR MaLR 0 364 1 11083 109 8 4 chr4 110789556 110791130 -91537217 - THE1B-int LTR MaLR 0 1580 1 2036 119 104 21 chr4 110791130 110791466 -91536881 - THE1B LTR MaLR 0 364 1 515 353 24 56 chr4 110791466 110791568 -91536779 + HERV16 LTR ERVL 1821 1921 -3171 * 2037 348 65 36 chr4 110791553 110792484 -91535863 + HERV16 LTR ERVL 3658 4648 -1116 1577 99 36 5 chr4 110792484 110792707 -91535640 + MER30 DNA MER1_type 1 230 0 2037 348 65 36 chr4 110792707 110793240 -91535107 + HERV16 LTR ERVL 4648 5164 -600 283 214 0 0 chr4 110793535 110793591 -91534756 + LTR16A1 LTR ERVL 45 100 -357 1560 175 99 6 chr4 110793925 110794279 -91534068 + MLT1B LTR MaLR 1 387 -3 1334 295 59 43 chr4 110794910 110795449 -91532898 + MER77 LTR ERV1 54 601 -4 2868 172 24 8 chr4 110796109 110796615 -91531732 - MLT2B1 LTR ERVL -6 514 1 33 25 0 0 chr4 110796981 110797021 -91531326 + AT_rich Low_complexity Low_complexity 1 40 0 270 0 0 0 chr4 110798232 110798262 -91530085 + (A)n Simple_repeat Simple_repeat 1 30 0 205 321 93 76 chr4 110798276 110798737 -91529610 - L2 LINE L2 -18 3295 2827 216 0 0 0 chr4 110799234 110799258 -91529089 + (CA)n Simple_repeat Simple_repeat 1 24 0 250 300 80 33 chr4 110799293 110799443 -91528904 + L2 LINE L2 3151 3307 -6 21 0 0 0 chr4 110799936 110799957 -91528390 + AT_rich Low_complexity Low_complexity 1 21 0 1288 198 117 24 chr4 110800327 110800661 -91527686 - MLT1A1 LTR MaLR 0 365 1 206 333 197 26 chr4 110802815 110802932 -91525415 - MIR SINE MIR -56 152 16 192 40 0 0 chr4 110803808 110803833 -91524514 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1513 188 17 17 chr4 110804096 110804388 -91523959 + AluJo SINE Alu 6 297 -15 525 362 99 27 chr4 110804831 110805419 -91522928 + L2 LINE L2 2022 2651 -663 27 49 0 0 chr4 110805726 110805767 -91522580 + AT_rich Low_complexity Low_complexity 1 41 0 248 271 0 59 chr4 110806078 110806163 -91522184 - MIR SINE MIR -97 165 86 457 231 9 19 chr4 110806169 110806277 -91522070 + L2 LINE L2 2219 2325 -989 203 313 100 0 chr4 110807022 110807102 -91521245 + MIR SINE MIR 56 143 -119 283 361 101 13 chr4 110807965 110808203 -91520144 + MIR SINE MIR 4 262 0 207 0 0 0 chr4 110808355 110808378 -91519969 + (CA)n Simple_repeat Simple_repeat 1 23 0 380 375 72 47 chr4 110808434 110808797 -91519550 + L2 LINE L2 2900 3271 -1 288 232 137 21 chr4 110808831 110808926 -91519421 + L2 LINE L2 3166 3271 -1 269 258 30 0 chr4 110808926 110808992 -91519355 + GA-rich Low_complexity Low_complexity 3 70 0 21 0 0 0 chr4 110809356 110809377 -91518970 + AT_rich Low_complexity Low_complexity 1 21 0 228 228 35 0 chr4 110810104 110810161 -91518186 + L2 LINE L2 3213 3271 -1 205 224 118 26 chr4 110811207 110811283 -91517064 + MIR3 SINE MIR 87 169 -39 437 301 118 20 chr4 110812593 110812796 -91515551 - MIR SINE MIR -38 224 2 219 330 97 16 chr4 110812993 110813178 -91515169 + MIR SINE MIR 57 256 -6 180 354 127 0 chr4 110813228 110813307 -91515040 + L2 LINE L2 3202 3290 -23 1995 131 7 0 chr4 110813594 110813877 -91514470 + AluSx SINE Alu 1 285 -27 303 266 232 21 chr4 110814105 110814515 -91513832 - MLT1G1 LTR MaLR -6 589 88 840 187 46 17 chr4 110816236 110816564 -91511783 + L1MCa LINE L1 1464 1892 -4534 4936 219 59 50 chr4 110816569 110818131 -91510216 + L1MA7 LINE L1 3008 4554 -2017 1654 178 10 13 chr4 110818131 110818429 -91509918 + AluJb SINE Alu 1 297 -15 4936 219 59 50 chr4 110818429 110820552 -91507795 + L1MA7 LINE L1 4554 6570 -1 4410 254 57 9 chr4 110820640 110822131 -91506216 + L1M4 LINE L1 2230 3792 -2354 956 249 46 15 chr4 110822136 110822478 -91505869 - MSTD LTR MaLR -2 394 1 1757 233 59 26 chr4 110822484 110823030 -91505317 + L1M4 LINE L1 3797 4360 -1786 24 0 0 0 chr4 110823093 110823117 -91505230 + AT_rich Low_complexity Low_complexity 1 24 0 832 311 50 23 chr4 110823168 110823809 -91504538 + L1ME3A LINE L1 3507 4167 -1979 186 171 0 0 chr4 110823828 110823869 -91504478 + GA-rich Low_complexity Low_complexity 2 42 0 1244 296 99 29 chr4 110823931 110824876 -91503471 + L1ME3A LINE L1 4146 5157 -989 208 139 28 0 chr4 110825017 110825053 -91503294 + (TG)n Simple_repeat Simple_repeat 2 38 0 408 245 65 13 chr4 110825058 110825213 -91503134 + L1ME3A LINE L1 5277 5439 -725 * 418 224 112 0 chr4 110825212 110825328 -91503019 + L1ME3A LINE L1 6034 6162 -8 2025 122 69 28 chr4 110825567 110825927 -91502420 - THE1C LTR MaLR 0 375 1 460 315 97 38 chr4 110826229 110826432 -91501915 + MIR SINE MIR 1 221 -41 1757 162 133 16 chr4 110826432 110826815 -91501532 + MSTA LTR MaLR 1 428 0 460 315 97 38 chr4 110826815 110826849 -91501498 + MIR SINE MIR 221 252 -10 227 391 58 29 chr4 110827307 110827550 -91500797 - L2 LINE L2 -126 3146 2897 2217 99 0 7 chr4 110827953 110828247 -91500100 - AluSc SINE Alu -17 292 1 492 300 92 49 chr4 110830783 110831164 -91497183 - MER115 DNA AcHobo -263 430 10 2483 34 3 0 chr4 110831363 110831661 -91496686 + L1PA5 LINE L1 5853 6151 -3 402 355 13 13 chr4 110831695 110831847 -91496500 - L2 LINE L2 -2 3311 3160 356 310 78 85 chr4 110832002 110832040 -91496307 - L2 LINE L2 -466 2848 2811 2208 62 38 14 chr4 110832040 110832331 -91496016 + AluY SINE Alu 1 298 -13 356 310 78 85 chr4 110832331 110832465 -91495882 - L2 LINE L2 -503 2811 2676 1383 208 29 43 chr4 110832465 110832657 -91495690 - MLT1A2 LTR MaLR -4 370 184 189 0 0 0 chr4 110832657 110832678 -91495669 + (GA)n Simple_repeat Simple_repeat 1 21 0 1383 208 29 43 chr4 110832678 110832860 -91495487 - MLT1A2 LTR MaLR -190 184 1 356 310 78 85 chr4 110832860 110832944 -91495403 - L2 LINE L2 -638 2676 2593 618 328 89 23 chr4 110835001 110835394 -91492953 + L2 LINE L2 88 506 -2808 627 151 34 8 chr4 110835483 110835602 -91492745 - MER46A DNA MER2_type -1 235 114 572 312 27 0 chr4 110835645 110835831 -91492516 - MIR SINE MIR -70 192 2 2126 96 114 18 chr4 110835878 110836210 -91492137 - THE1B LTR MaLR 0 364 1 11712 91 6 2 chr4 110836210 110837784 -91490563 - THE1B-int LTR MaLR 0 1580 1 2012 97 122 21 chr4 110837786 110837839 -91490508 - THE1B LTR MaLR -2 362 316 459 0 0 0 chr4 110837839 110837890 -91490457 + (CA)n Simple_repeat Simple_repeat 2 52 0 2012 97 122 21 chr4 110837890 110838165 -91490182 - THE1B LTR MaLR -48 316 1 960 333 198 5 chr4 110838165 110838929 -91489418 + L2 LINE L2 632 1542 -1772 12293 187 24 15 chr4 110839514 110843096 -91485251 - L1PB1 LINE L1 -1 6150 2539 918 147 0 0 chr4 110843086 110843229 -91485118 - L1PA16 LINE L1 -176 5990 5848 * 4108 140 14 9 chr4 110843230 110844039 -91484308 - L1PA16 LINE L1 -252 5914 5106 343 96 0 0 chr4 110844049 110844101 -91484246 - L1PA16 LINE L1 -9 6157 6106 197 250 50 0 chr4 110845090 110845150 -91483197 + L2 LINE L2 3251 3313 0 248 261 0 31 chr4 110845416 110845481 -91482866 - MIR3 SINE MIR -21 187 125 190 283 200 39 chr4 110845724 110845904 -91482443 - L3 LINE CR1 -206 1371 1163 347 308 70 14 chr4 110846312 110846455 -91481892 - MLT1K LTR MaLR -377 211 61 1368 322 87 58 chr4 110846491 110847523 -91480824 - L3 LINE CR1 -495 1082 21 551 330 49 75 chr4 110847748 110848097 -91480250 + L2 LINE L2 2932 3271 -1 23 54 0 0 chr4 110849266 110849303 -91479044 + AT_rich Low_complexity Low_complexity 1 37 0 28 29 0 0 chr4 110849430 110849465 -91478882 + AT_rich Low_complexity Low_complexity 1 35 0 320 360 0 0 chr4 110849492 110849581 -91478766 + MIR SINE MIR 37 125 -83 253 171 14 14 chr4 110849752 110849822 -91478525 + (TGAA)n Simple_repeat Simple_repeat 3 72 0 2249 112 3 0 chr4 110849934 110850229 -91478118 + AluSg SINE Alu 1 296 -14 186 43 0 0 chr4 110851226 110851249 -91477098 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 63 26 0 0 chr4 110851363 110851440 -91476907 + AT_rich Low_complexity Low_complexity 1 77 0 211 102 0 51 chr4 110851440 110851499 -91476848 + (TAAAAA)n Simple_repeat Simple_repeat 1 56 0 40 49 0 0 chr4 110851499 110851560 -91476787 + AT_rich Low_complexity Low_complexity 1 61 0 821 316 59 30 chr4 110851733 110852226 -91476121 + L1MEd LINE L1 269 775 -5344 722 294 52 36 chr4 110852276 110852582 -91475765 - LTR16A1 LTR ERVL 0 457 147 354 227 63 20 chr4 110852854 110853035 -91475312 - L1MEd LINE L1 -3865 2517 2327 476 331 84 52 chr4 110853447 110854183 -91474164 - L1MEd LINE L1 -4684 1700 954 13575 24 0 0 chr4 110855909 110858146 -91470201 - L1PA2 LINE L1 -140 6015 3778 42343 39 28 1 chr4 110858248 110863514 -91464833 - L1P LINE L1 -743 5403 1 202 326 68 23 chr4 110863814 110863946 -91464401 - L2 LINE L2 -203 3069 2932 35 24 0 0 chr4 110864135 110864177 -91464170 + AT_rich Low_complexity Low_complexity 1 42 0 1256 164 0 0 chr4 110864178 110864403 -91463944 - L1MA4 LINE L1 -9 6291 6067 1557 184 19 56 chr4 110864421 110864928 -91463419 - L1P4 LINE L1 -662 5506 5044 227 140 20 0 chr4 110864948 110864998 -91463349 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 264 77 0 0 chr4 110865017 110865056 -91463291 + (CA)n Simple_repeat Simple_repeat 2 40 0 2085 122 0 10 chr4 110867353 110867648 -91460699 + AluSx SINE Alu 3 294 -18 27 29 0 0 chr4 110867833 110867867 -91460480 + AT_rich Low_complexity Low_complexity 1 34 0 577 309 101 23 chr4 110869052 110869359 -91458988 + MLT1J2 LTR MaLR 1 331 -119 21 0 0 0 chr4 110869498 110869519 -91458828 + AT_rich Low_complexity Low_complexity 1 21 0 367 323 37 18 chr4 110869828 110869992 -91458355 - MIR3 SINE MIR -7 201 35 195 203 0 0 chr4 110870649 110870713 -91457634 + (TA)n Simple_repeat Simple_repeat 2 65 0 514 320 59 42 chr4 110870858 110870969 -91457378 + L1ME4a LINE L1 5270 5378 -743 2620 14 0 0 chr4 110870969 110871257 -91457090 + AluYa5 SINE Alu 24 311 0 514 320 59 42 chr4 110871257 110871554 -91456793 + L1ME4a LINE L1 5378 5685 -436 298 269 51 13 chr4 110871794 110871950 -91456397 + L1ME4a LINE L1 5767 5928 -193 4373 148 31 5 chr4 110872031 110872769 -91455578 + Tigger4(Zombi) DNA MER2_type 1 757 -1974 2795 10 0 0 chr4 110872982 110873287 -91455060 - AluYa5 SINE Alu -6 305 1 580 269 79 75 chr4 110876177 110876430 -91451917 - MIR SINE MIR -2 260 7 726 308 94 45 chr4 110876587 110877171 -91451176 - L2 LINE L2 -2 3311 2689 29237 123 19 58 chr4 110877173 110883590 -91444757 + L1PA7 LINE L1 9 6171 0 409 348 56 6 chr4 110883592 110883770 -91444577 - L2 LINE L2 -623 2691 2505 * 822 330 79 19 chr4 110883768 110884147 -91444200 - L3 LINE CR1 -201 1376 975 276 297 95 69 chr4 110886361 110886593 -91441754 - L2 LINE L2 -2 3311 3074 261 0 0 0 chr4 110886712 110886741 -91441606 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 291 246 35 0 chr4 110887321 110887463 -91440884 + (TA)n Simple_repeat Simple_repeat 2 148 0 6203 252 110 18 chr4 110887484 110888877 -91439470 + L1MD3 LINE L1 2774 4038 -3957 2181 116 0 0 chr4 110888877 110889169 -91439178 - AluSx SINE Alu -12 300 9 6203 252 110 18 chr4 110889169 110890529 -91437818 + L1MD3 LINE L1 4038 5272 -2723 1292 129 176 29 chr4 110890529 110890801 -91437546 + AluSx SINE Alu 1 312 0 6203 252 110 18 chr4 110890801 110892381 -91435966 + L1MD3 LINE L1 5272 7667 -328 3264 65 2 33 chr4 110892381 110892839 -91435508 + L1PA8 LINE L1 5729 6172 0 6203 252 110 18 chr4 110892839 110893191 -91435156 + L1MD3 LINE L1 7667 7985 -10 1835 267 31 44 chr4 110893198 110893875 -91434472 + L1ME3A LINE L1 5494 6161 -9 336 265 10 41 chr4 110893888 110893986 -91434361 - L2 LINE L2 -604 2710 2616 369 284 107 55 chr4 110894400 110895176 -91433171 + L1M4 LINE L1 2211 3026 -3120 27 29 0 0 chr4 110895204 110895238 -91433109 + AT_rich Low_complexity Low_complexity 1 34 0 307 387 65 24 chr4 110895436 110895684 -91432663 - L2 LINE L2 -2842 472 215 2598 55 0 0 chr4 110896027 110896335 -91432012 + AluY SINE Alu 2 309 -2 22 0 0 0 chr4 110896546 110896568 -91431779 + AT_rich Low_complexity Low_complexity 1 22 0 399 302 119 74 chr4 110897013 110897324 -91431023 - L2 LINE L2 0 3272 2948 180 301 60 36 chr4 110898628 110898711 -91429636 - MIR3 SINE MIR -6 202 118 299 331 39 8 chr4 110900573 110900700 -91427647 - MIR SINE MIR -84 178 48 370 385 87 23 chr4 110901093 110901529 -91426818 - L2 LINE L2 -427 2887 2424 1942 129 25 0 chr4 110901726 110902012 -91426335 + AluSx SINE Alu 1 293 -19 388 308 13 50 chr4 110902046 110902205 -91426142 + L2 LINE L2 3159 3311 -2 610 233 74 6 chr4 110903610 110903786 -91424561 + MER115 DNA AcHobo 505 692 -1 366 221 81 7 chr4 110904418 110904554 -91423793 + MER103 DNA DNA 13 158 -8 247 314 168 43 chr4 110904790 110904975 -91423372 + L3b LINE CR1 1246 1453 -130 281 250 102 11 chr4 110906629 110906717 -91421630 + L2 LINE L2 3169 3264 -8 38 0 0 0 chr4 110909851 110909889 -91418458 + AT_rich Low_complexity Low_complexity 1 38 0 331 378 74 14 chr4 110910092 110910240 -91418107 + L2 LINE L2 3115 3271 -1 1799 189 31 3 chr4 110910300 110910655 -91417692 + MLT1A1 LTR MaLR 1 365 0 253 337 89 10 chr4 110911001 110911102 -91417245 - MIR SINE MIR -64 144 36 400 305 16 47 chr4 110911340 110911468 -91416879 + MIR SINE MIR 48 171 -91 684 306 37 12 chr4 110911532 110911777 -91416570 - MIR SINE MIR -10 252 2 605 284 222 8 chr4 110911925 110912164 -91416183 + L2 LINE L2 2645 2934 -380 184 261 50 124 chr4 110912173 110912334 -91416013 + L2 LINE L2 3036 3184 -129 229 322 89 22 chr4 110912407 110912497 -91415850 + L2 LINE L2 3194 3289 -24 480 301 62 21 chr4 110913351 110913544 -91414803 + MIR SINE MIR 7 207 -55 180 77 0 0 chr4 110913602 110913628 -91414719 + (CAAAAA)n Simple_repeat Simple_repeat 5 30 0 288 316 0 20 chr4 110914997 110915095 -91413252 - MIR SINE MIR -57 151 56 2326 95 3 0 chr4 110915430 110915734 -91412613 - AluSp SINE Alu -5 308 4 283 344 44 0 chr4 110916609 110916699 -91411648 - L2 LINE L2 -28 3244 3151 186 383 90 25 chr4 110916865 110917066 -91411281 - L2 LINE L2 -234 3038 2825 253 368 0 0 chr4 110917281 110917368 -91410979 - L2 LINE L2 -535 2779 2693 1296 244 96 24 chr4 110917398 110917890 -91410457 + MER20B DNA MER1_type 2 528 -255 475 270 20 85 chr4 110918088 110918288 -91410059 - MER5A DNA MER1_type 0 189 3 195 200 25 0 chr4 110918295 110918335 -91410012 + MIR3 SINE MIR 165 205 -3 196 204 23 0 chr4 110919351 110919395 -91408952 + MIR SINE MIR 159 203 -59 501 318 0 8 chr4 110920339 110920471 -91407876 + MIR SINE MIR 16 146 -62 242 29 29 0 chr4 110921369 110921404 -91406943 + (CAA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr4 110921739 110921761 -91406586 + AT_rich Low_complexity Low_complexity 1 22 0 283 326 0 0 chr4 110921880 110921966 -91406381 - L2 LINE L2 0 3313 3228 209 200 0 0 chr4 110923696 110923731 -91404616 + polypyrimidine Low_complexity Low_complexity 2 36 0 2198 114 0 0 chr4 110924024 110924321 -91404026 - AluSx SINE Alu -15 297 1 4989 92 18 4 chr4 110924390 110925125 -91403222 - L1MA2 LINE L1 0 6304 5560 1818 237 18 20 chr4 110925972 110926461 -91401886 + L1ME1 LINE L1 5646 6133 -33 373 279 12 0 chr4 110926674 110926760 -91401587 - L2 LINE L2 0 3272 3186 180 0 0 0 chr4 110926985 110927005 -91401342 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 220 404 107 9 chr4 110927576 110927801 -91400546 - L2 LINE L2 -351 2963 2717 1401 100 0 0 chr4 110927943 110928158 -91400189 + AluSg/x SINE Alu 105 319 0 885 243 24 57 chr4 110929058 110929416 -91398931 + LTR40a LTR ERVL 164 517 -2 201 147 0 0 chr4 110929896 110929930 -91398417 + (A)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr4 110930985 110931006 -91397341 + AT_rich Low_complexity Low_complexity 1 21 0 2462 77 0 0 chr4 110932383 110932694 -91395653 + AluY SINE Alu 1 311 0 452 280 104 8 chr4 110936358 110936483 -91391864 - MER20 DNA MER1_type -82 137 1 21 57 0 0 chr4 110937912 110937947 -91390400 + AT_rich Low_complexity Low_complexity 1 35 0 249 297 129 0 chr4 110937947 110938048 -91390299 + L2 LINE L2 3199 3312 -1 22 0 0 0 chr4 110938102 110938124 -91390223 + AT_rich Low_complexity Low_complexity 1 22 0 286 364 63 0 chr4 110938333 110938476 -91389871 + MIR SINE MIR 87 238 -24 328 323 81 37 chr4 110938604 110938765 -91389582 + MIR3 SINE MIR 35 202 -6 686 357 33 15 chr4 110938995 110939328 -91389019 + LTR16C LTR ERVL 151 489 -2 2493 67 0 0 chr4 110939704 110940002 -91388345 + AluY SINE Alu 1 298 -13 702 314 30 63 chr4 110940309 110940643 -91387704 + ERVL LTR ERVL 2882 3204 -2560 273 324 97 7 chr4 110942030 110942083 -91386264 - MIR SINE MIR -1 261 214 441 0 0 0 chr4 110942083 110942132 -91386215 + (TG)n Simple_repeat Simple_repeat 2 50 0 273 324 97 7 chr4 110942132 110942223 -91386124 - MIR SINE MIR -48 214 104 198 320 13 26 chr4 110942465 110942543 -91385804 - L2 LINE L2 0 3313 3237 258 283 232 10 chr4 110942570 110942669 -91385678 + L2 LINE L2 3184 3304 -9 362 320 99 33 chr4 110942895 110943198 -91385149 - L1MEd LINE L1 -822 5324 5002 426 251 74 55 chr4 110943409 110943772 -91384575 - L1MEd LINE L1 -1511 4635 4266 394 312 99 32 chr4 110943761 110944546 -91383801 - L1MEd LINE L1 -2184 3962 3125 * 410 227 106 0 chr4 110944601 110944733 -91383614 + LTR52 LTR ERVL 230 375 -46 550 351 39 26 chr4 110944734 110945116 -91383231 - L1MEd LINE L1 -3107 3039 2653 1418 215 52 33 chr4 110945155 110945523 -91382824 - LTR52 LTR ERVL -46 375 1 236 232 12 12 chr4 110946283 110946365 -91381982 - L1M4 LINE L1 -1452 4694 4613 4740 179 60 5 chr4 110946382 110947343 -91381004 - L1MA6 LINE L1 -7 6995 5982 7192 210 62 28 chr4 110947367 110947414 -91380933 - L1MA6 LINE L1 -1865 4983 4939 207 0 0 0 chr4 110947414 110947437 -91380910 + (CA)n Simple_repeat Simple_repeat 2 24 0 7192 210 62 28 chr4 110947437 110951127 -91377220 - L1MA6 LINE L1 -1909 4939 1119 28 48 0 0 chr4 110951186 110951228 -91377119 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr4 110951462 110951493 -91376854 + AT_rich Low_complexity Low_complexity 1 31 0 408 275 81 102 chr4 110951675 110952242 -91376105 - L1MEd LINE L1 -1126 1381 827 235 287 315 0 chr4 110953022 110953165 -91375182 + MIR SINE MIR 75 262 0 21 71 0 0 chr4 110953165 110953207 -91375140 + AT_rich Low_complexity Low_complexity 1 42 0 201 383 43 49 chr4 110954167 110954514 -91373833 + L2 LINE L2 925 1269 -2045 573 216 11 88 chr4 110954521 110954702 -91373645 + MER5B DNA MER1_type 1 167 -11 561 251 74 12 chr4 110954711 110954874 -91373473 - MER5B DNA MER1_type -5 173 1 230 350 171 35 chr4 110954888 110955603 -91372744 + L2 LINE L2 1336 2147 -1167 202 282 84 0 chr4 110956176 110956247 -91372100 + MIR SINE MIR 183 259 -3 24 53 0 0 chr4 110956278 110956316 -91372031 + AT_rich Low_complexity Low_complexity 1 38 0 231 336 35 9 chr4 110956474 110956590 -91371757 + MIR3 SINE MIR 83 201 -7 1735 190 18 3 chr4 110957006 110957343 -91371004 - MER2 DNA MER2_type -1 343 2 411 113 0 0 chr4 110957344 110957406 -91370941 + (TG)n Simple_repeat Simple_repeat 1 62 0 254 326 51 7 chr4 110957463 110957601 -91370746 - L1MDa LINE L1 -2507 4033 3890 42377 35 21 1 chr4 110957601 110963627 -91364720 + L1PA2 LINE L1 4 6153 -2 374 287 40 11 chr4 110963627 110963801 -91364546 - L1MDa LINE L1 -2641 3899 3721 21 82 0 0 chr4 110965574 110965623 -91362724 + AT_rich Low_complexity Low_complexity 1 49 0 212 260 0 0 chr4 110965719 110965769 -91362578 + GA-rich Low_complexity Low_complexity 2 51 0 541 113 0 0 chr4 110966748 110966828 -91361519 + MADE1 DNA Mariner 1 80 0 1231 188 5 5 chr4 110966841 110967064 -91361283 - AluJo SINE Alu -3 309 87 189 0 0 0 chr4 110967162 110967183 -91361164 + (T)n Simple_repeat Simple_repeat 1 21 0 1701 114 51 24 chr4 110967231 110967563 -91360784 - L1MA2 LINE L1 0 6304 5964 231 36 0 0 chr4 110967572 110967600 -91360747 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2204 96 0 0 chr4 110967601 110967882 -91360465 - AluSq SINE Alu -32 281 1 225 0 0 0 chr4 110967989 110968014 -91360333 + (TG)n Simple_repeat Simple_repeat 2 26 0 413 230 141 42 chr4 110968031 110968222 -91360125 - L1MDa LINE L1 -2986 3554 3345 1078 279 42 76 chr4 110968224 110968466 -91359881 + LTR16B LTR ERVL 3 223 -241 1452 104 0 0 chr4 110968466 110968659 -91359688 - AluSq SINE Alu -13 300 108 1078 279 42 76 chr4 110968659 110968892 -91359455 + LTR16B LTR ERVL 223 462 -2 241 274 49 39 chr4 110969289 110969493 -91358854 - L1MDa LINE L1 -3894 2646 2441 244 305 92 8 chr4 110969986 110970117 -91358230 - L1MDa LINE L1 -5974 556 415 1224 287 51 17 chr4 110970145 110970733 -91357614 + Charlie7 DNA MER1_type 121 728 -1884 9595 196 29 17 chr4 110970740 110972899 -91355448 + L1MA3 LINE L1 2278 4461 -1685 7001 32 0 1 chr4 110972883 110973719 -91354628 + L1PA4 LINE L1 3500 4334 -1812 * 6842 5 0 5 chr4 110973729 110974503 -91353844 - L1HS LINE L1 0 6155 5386 * 8060 30 0 6 chr4 110974500 110975460 -91352887 + L1HS LINE L1 4413 5368 -778 8753 40 0 0 chr4 110975460 110977301 -91351046 + L1PA4 LINE L1 4315 6155 0 8060 30 0 6 chr4 110977301 110977330 -91351017 + L1PA4 LINE L1 5368 5396 -750 3766 174 24 15 chr4 110977308 110978115 -91350232 + L1MA3 LINE L1 4493 5306 -840 * 2420 69 0 31 chr4 110978142 110978459 -91349888 - AluY SINE Alu -4 307 1 1908 138 0 0 chr4 110978459 110978735 -91349612 - AluSx SINE Alu -36 276 1 6500 125 14 2 chr4 110978763 110979988 -91348359 + L1PB1 LINE L1 4916 6151 0 259 188 31 56 chr4 110980011 110980171 -91348176 + (TTATA)n Simple_repeat Simple_repeat 2 157 0 352 227 55 27 chr4 110980196 110980306 -91348041 + L1MC5 LINE L1 7823 7935 -26 * 4114 123 23 13 chr4 110980297 110981000 -91347347 + L1MA3 LINE L1 5290 5991 -314 573 333 33 11 chr4 110981049 110981319 -91347028 - L3b LINE CR1 -181 1402 1127 2175 135 28 8 chr4 110982653 110983009 -91345338 - THE1B LTR MaLR -1 363 1 1444 195 18 82 chr4 110983753 110983803 -91344544 + MLT1A1 LTR MaLR 1 53 -312 6696 74 8 20 chr4 110983803 110984744 -91343603 + L1PA8 LINE L1 4542 5469 -703 2152 117 0 3 chr4 110984744 110985044 -91343303 + AluSx SINE Alu 1 299 -13 6696 74 8 20 chr4 110985044 110985740 -91342607 + L1PA8 LINE L1 5469 6172 0 1444 195 18 82 chr4 110985740 110986079 -91342268 + MLT1A1 LTR MaLR 53 365 0 189 0 0 0 chr4 110987328 110987349 -91340998 + (CA)n Simple_repeat Simple_repeat 2 22 0 1042 247 123 87 chr4 110987572 110988249 -91340098 - L1ME3 LINE L1 -28 6134 5434 1115 198 28 8 chr4 110988254 110988506 -91339841 + L1PB4 LINE L1 5900 6156 0 1264 107 11 0 chr4 110988884 110989071 -91339276 - L1PA8 LINE L1 -13 6159 5971 619 269 16 11 chr4 110989957 110990139 -91338208 - L1PB4 LINE L1 -4 6152 5970 1100 58 0 0 chr4 110990509 110990648 -91337699 - L1PA4 LINE L1 -2102 4044 3906 11140 32 0 0 chr4 110990648 110992757 -91335590 + L1PA4 LINE L1 4040 6155 0 189 0 0 0 chr4 110993440 110993461 -91334886 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr4 110993602 110993623 -91334724 + AT_rich Low_complexity Low_complexity 1 21 0 339 263 110 76 chr4 110994516 110994752 -91333595 - HAL1 LINE L1 -1043 1464 1221 1423 83 14 18 chr4 110994761 110994978 -91333369 + L1PA13 LINE L1 5941 6156 -7 378 219 106 13 chr4 110995187 110995338 -91333009 - L1MEd LINE L1 -5273 846 682 2301 237 49 19 chr4 110995341 110996092 -91332255 - L1MEd LINE L1 -3242 2887 2114 1406 100 4 62 chr4 110996111 110996352 -91331995 - L1PA14 LINE L1 -1 6160 5934 335 343 90 10 chr4 110996472 110996673 -91331674 - L1MEd LINE L1 -5650 469 253 23 97 0 0 chr4 110996689 110996761 -91331586 + AT_rich Low_complexity Low_complexity 1 72 0 723 281 153 40 chr4 110997525 110997924 -91330423 + MLT1J1 LTR MaLR 3 446 0 216 86 0 0 chr4 110999542 110999577 -91328770 + (A)n Simple_repeat Simple_repeat 1 35 0 225 0 0 0 chr4 110999577 110999602 -91328745 + (CA)n Simple_repeat Simple_repeat 2 26 0 513 319 73 52 chr4 110999735 111000252 -91328095 + L2 LINE L2 1182 1709 -1605 238 322 82 7 chr4 111000953 111001099 -91327248 + L2 LINE L2 1861 2017 -1297 21 0 0 0 chr4 111001131 111001152 -91327195 + AT_rich Low_complexity Low_complexity 1 21 0 567 74 0 0 chr4 111001715 111001796 -91326551 + (TA)n Simple_repeat Simple_repeat 1 81 0 209 245 0 0 chr4 111002660 111002709 -91325638 + L2 LINE L2 3265 3313 0 530 397 74 31 chr4 111003355 111004298 -91324049 - L2 LINE L2 0 3272 2198 370 270 63 16 chr4 111006546 111006672 -91321675 - L2 LINE L2 -208 3064 2933 203 246 0 0 chr4 111006768 111006816 -91321531 + T-rich Low_complexity Low_complexity 1 51 -6 730 115 23 15 chr4 111006816 111006946 -91321401 - L1PA15 LINE L1 0 6165 6035 893 60 0 0 chr4 111006955 111007071 -91321276 - L1PA5 LINE L1 -1 6153 6038 1460 230 53 3 chr4 111007576 111008004 -91320343 - L1MD3 LINE L1 -10 7985 7446 1429 222 92 72 chr4 111008020 111008627 -91319720 + L1MC4a LINE L1 6745 7363 -445 26 0 0 0 chr4 111008629 111008655 -91319692 + AT_rich Low_complexity Low_complexity 1 26 0 501 311 101 19 chr4 111008735 111009151 -91319196 - L1MC/D LINE L1 -755 5391 5223 2351 153 44 2 chr4 111009368 111009779 -91318568 + MSTA LTR MaLR 1 428 0 267 388 142 9 chr4 111010194 111010777 -91317570 - L2 LINE L2 -443 2871 2211 367 286 91 71 chr4 111010905 111010950 -91317397 + L2 LINE L2 3000 3043 -270 2550 101 3 6 chr4 111010950 111011306 -91317041 - THE1A LTR MaLR 0 355 1 11380 99 5 2 chr4 111011306 111012881 -91315466 - THE1A-int LTR MaLR 0 1580 1 2231 114 22 31 chr4 111012881 111013239 -91315108 - THE1A LTR MaLR 0 355 1 367 286 91 71 chr4 111013239 111013499 -91314848 + L2 LINE L2 3042 3313 0 7190 119 52 3 chr4 111014555 111015727 -91312620 + Tigger3b DNA MER2_type 2 1231 0 219 272 0 0 chr4 111015734 111015826 -91312521 + (TA)n Simple_repeat Simple_repeat 2 93 0 198 0 0 0 chr4 111016184 111016206 -91312141 + (TG)n Simple_repeat Simple_repeat 2 23 0 331 229 84 30 chr4 111017186 111017317 -91311030 - Charlie7 DNA MER1_type 0 2612 2475 247 331 169 7 chr4 111017921 111018069 -91310278 - MER5A DNA MER1_type -14 175 4 824 256 58 102 chr4 111018111 111018611 -91309736 - L1MC4 LINE L1 0 8042 7565 693 79 26 132 chr4 111018612 111018764 -91309583 - AluSg/x SINE Alu -11 301 166 1941 106 3 59 chr4 111018853 111019174 -91309173 - AluSx SINE Alu -9 303 1 740 175 58 0 chr4 111019197 111019334 -91309013 - MER44D DNA MER2_type 0 605 461 518 223 77 15 chr4 111019320 111019450 -91308897 - MER44D DNA MER2_type -201 408 1 * 1955 221 128 0 chr4 111019461 111020000 -91308347 - L1MC4 LINE L1 -502 7540 6933 1548 198 7 7 chr4 111020025 111020313 -91308034 + AluJb SINE Alu 1 288 -24 2170 151 204 114 chr4 111020329 111020853 -91307494 - L1MC3 LINE L1 -24 7761 7285 268 299 0 0 chr4 111020853 111020920 -91307427 - MLT1F1 LTR MaLR -465 102 36 2170 151 204 114 chr4 111020920 111021058 -91307289 - L1MC3 LINE L1 -500 7285 7161 2396 93 29 3 chr4 111021058 111021403 -91306944 - L1PA10 LINE L1 -12 6156 5803 2170 151 204 114 chr4 111021403 111021468 -91306879 - L1MC3 LINE L1 -624 7161 6896 269 221 268 17 chr4 111021497 111021732 -91306615 - L1MCa LINE L1 -3011 3553 3260 580 207 0 55 chr4 111021749 111021869 -91306478 + L1MCa LINE L1 2347 2498 -3993 2197 114 0 0 chr4 111021869 111022167 -91306180 + AluSx SINE Alu 1 298 -14 580 207 0 55 chr4 111022167 111022212 -91306135 + L1MCa LINE L1 2498 2544 -3947 * 1728 274 40 26 chr4 111022208 111023239 -91305108 - L1MCa LINE L1 -3310 3254 2186 1571 220 40 31 chr4 111023279 111023756 -91304591 - L1MCa LINE L1 -4907 1657 1177 342 258 54 0 chr4 111023745 111023838 -91304509 - L1P LINE L1 -2090 4056 3959 * 563 189 18 0 chr4 111023884 111023995 -91304352 + L1 LINE L1 4978 5090 -1056 * 886 263 35 9 chr4 111023992 111024220 -91304127 - L1MCa LINE L1 -5242 803 570 2596 39 7 0 chr4 111024304 111024612 -91303735 + AluY SINE Alu 1 310 -1 789 284 93 16 chr4 111024643 111024956 -91303391 - L1MCa LINE L1 -5480 565 229 705 293 168 0 chr4 111024956 111025253 -91303094 + LTR16B LTR ERVL 114 460 -4 322 155 155 21 chr4 111025262 111025359 -91302988 - L1ME LINE L1 -3594 2486 2377 1128 275 93 54 chr4 111025384 111026233 -91302114 - L1ME LINE L1 -4441 1639 760 341 229 12 0 chr4 111026221 111026304 -91302043 - L1MA9 LINE L1 -38 6274 6191 * 323 254 26 61 chr4 111026419 111026533 -91301814 - L1ME LINE L1 -5955 115 6 293 262 32 63 chr4 111026878 111027004 -91301343 + MLT1L LTR MaLR 166 287 -328 239 305 0 29 chr4 111027175 111027280 -91301067 + MLT1L LTR MaLR 512 613 -2 183 395 0 0 chr4 111027288 111027374 -91300973 + MIR SINE MIR 166 251 -11 264 261 15 0 chr4 111028133 111028198 -91300149 + G-rich Low_complexity Low_complexity 5 70 0 722 62 0 10 chr4 111128665 111128761 -91199586 + L1P LINE L1 1509 1603 -4543 24 0 0 0 chr4 111128785 111128809 -91199538 + AT_rich Low_complexity Low_complexity 1 24 0 9640 195 40 16 chr4 111128809 111131077 -91197270 + L1 LINE L1 2942 5263 -883 27 0 0 0 chr4 111131447 111131474 -91196873 + AT_rich Low_complexity Low_complexity 1 27 0 4534 184 8 26 chr4 111132501 111133451 -91194896 + L1P LINE L1 2605 3537 -2609 293 314 94 6 chr4 111134925 111135084 -91193263 - L1MC/D LINE L1 -2033 5775 5603 650 157 209 11 chr4 111135101 111135292 -91193055 - L1MA3 LINE L1 0 6305 6077 2114 128 7 7 chr4 111135495 111135800 -91192547 - AluSc SINE Alu -4 305 1 372 314 64 5 chr4 111135821 111136025 -91192322 - L1MC/D LINE L1 -842 5304 5089 2045 237 41 32 chr4 111136681 111136932 -91191415 + MER68 LTR ERV1 22 269 -293 2060 104 0 21 chr4 111136932 111137255 -91191092 - AluSg SINE Alu 0 317 1 2045 237 41 32 chr4 111137255 111137538 -91190809 + MER68 LTR ERV1 269 562 0 287 339 55 67 chr4 111137560 111137674 -91190673 - L2 LINE L2 -4 3268 3155 702 176 59 143 chr4 111137674 111137912 -91190435 + MER20 DNA MER1_type 2 219 0 287 339 55 67 chr4 111137912 111137962 -91190385 - L2 LINE L2 -117 3155 3106 241 288 50 0 chr4 111138055 111138135 -91190212 + L2 LINE L2 967 1050 -2264 1586 188 16 6 chr4 111138145 111138459 -91189888 + L1 LINE L1 3814 4130 -2016 1029 178 52 0 chr4 111138485 111138715 -91189632 + L1 LINE L1 4305 4546 -1600 13231 148 21 18 chr4 111138716 111139925 -91188422 - L1P LINE L1 -743 5403 4199 2256 97 3 28 chr4 111139925 111140244 -91188103 - AluY SINE Alu 0 311 1 13231 148 21 18 chr4 111140244 111141519 -91186828 - L1P LINE L1 -1947 4199 2944 285 143 131 12 chr4 111141623 111141707 -91186640 + Charlie1 DNA MER1_type 2479 2572 -189 3957 108 45 93 chr4 111141707 111142511 -91185836 + L1MA5A LINE L1 5511 6275 -22 534 202 118 0 chr4 111142531 111142709 -91185638 + Charlie1 DNA MER1_type 2563 2761 0 885 232 31 45 chr4 111142719 111142943 -91185404 + MER58A DNA MER1_type 4 224 0 368 242 7 118 chr4 111142968 111143121 -91185226 - MER5B DNA MER1_type -42 136 1 839 284 130 11 chr4 111143350 111143663 -91184684 - MLT1J2 LTR MaLR -24 426 63 2206 121 0 7 chr4 111143663 111143968 -91184379 + AluSx SINE Alu 1 303 -9 839 284 130 11 chr4 111143968 111144016 -91184331 - MLT1J2 LTR MaLR -387 63 22 1794 206 46 28 chr4 111144088 111144584 -91183763 + MLT1D LTR MaLR 1 505 0 270 333 26 18 chr4 111144680 111144794 -91183553 - L2 LINE L2 0 3272 3158 21 0 0 0 chr4 111146177 111146198 -91182149 + AT_rich Low_complexity Low_complexity 1 21 0 323 277 72 30 chr4 111147016 111147180 -91181167 - MLT1L LTR MaLR -8 607 340 860 250 99 8 chr4 111147399 111147651 -91180696 + MER90 LTR ERV1 2 276 -338 4787 171 47 27 chr4 111147752 111148554 -91179793 - Charlie1a DNA MER1_type -1765 996 169 2232 119 36 30 chr4 111148554 111148916 -91179431 + THE1B LTR MaLR 1 364 0 4787 171 47 27 chr4 111148916 111149089 -91179258 - Charlie1a DNA MER1_type -2592 169 1 211 267 0 0 chr4 111149353 111149398 -91178949 + GA-rich Low_complexity Low_complexity 2 46 0 628 276 117 0 chr4 111149839 111150035 -91178312 + MLT1J2 LTR MaLR 191 409 -41 243 345 149 6 chr4 111150093 111150261 -91178086 - L2 LINE L2 -686 2628 2437 279 0 0 0 chr4 111154171 111154202 -91174145 + (A)n Simple_repeat Simple_repeat 1 31 0 245 224 0 0 chr4 111154295 111154344 -91174003 + MER5B DNA MER1_type 124 172 -6 579 357 83 21 chr4 111155263 111155745 -91172602 + L3 LINE CR1 844 1355 -222 21 0 0 0 chr4 111155857 111155878 -91172469 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4 111156370 111156401 -91171946 + AT_rich Low_complexity Low_complexity 1 31 0 2209 107 3 3 chr4 111156430 111156729 -91171618 - AluSq SINE Alu -14 299 1 490 44 0 0 chr4 111156737 111156805 -91171542 - L1PA13 LINE L1 0 6163 6096 501 116 113 14 chr4 111156807 111156919 -91171428 - L1P5 LINE L1 -551 5605 5482 357 260 206 2 chr4 111157430 111157581 -91170766 + MIR3 SINE MIR 9 184 -24 3461 147 33 20 chr4 111158624 111159520 -91168827 + L1M2 LINE L1 4693 5608 -704 5451 275 41 55 chr4 111159521 111161431 -91166916 + L1M2 LINE L1 2 1885 -4964 3044 210 74 1 chr4 111161429 111162400 -91165947 + L1M2 LINE L1 2642 3676 -3172 * 7609 142 38 26 chr4 111162397 111163692 -91164655 + L1PA6 LINE L1 2 1311 -4835 28619 53 7 10 chr4 111164725 111168504 -91159843 + L1PA6 LINE L1 1696 5449 -705 2617 49 0 3 chr4 111168504 111168812 -91159535 + AluYa5 SINE Alu 1 307 -4 28619 53 7 10 chr4 111168812 111169512 -91158835 + L1PA6 LINE L1 5449 6150 -4 23 0 0 0 chr4 111169514 111169537 -91158810 + AT_rich Low_complexity Low_complexity 1 23 0 259 313 48 7 chr4 111170015 111170162 -91158185 + L1MCc LINE L1 1226 1378 -5045 613 310 34 16 chr4 111170186 111170509 -91157838 + L1MCc LINE L1 2306 2634 -4488 10704 156 86 22 chr4 111170534 111170898 -91157449 + L1M1 LINE L1 796 1135 -6430 1892 164 0 7 chr4 111170898 111171215 -91157132 - AluSx SINE Alu 0 315 1 10704 156 86 22 chr4 111171215 111172822 -91155525 + L1M1 LINE L1 1135 2894 -4671 18399 184 34 17 chr4 111172845 111176343 -91152004 + L1MA5 LINE L1 152 3760 -3805 1796 115 73 31 chr4 111176343 111176631 -91151716 + AluSg SINE Alu 1 300 -10 18399 184 34 17 chr4 111176631 111178107 -91150240 + L1MA5 LINE L1 3760 5210 -2355 * 22586 95 21 5 chr4 111178106 111182230 -91146117 + L1PA7 LINE L1 1973 6154 0 5561 191 20 55 chr4 111182222 111184899 -91143448 + L1MA5 LINE L1 5194 7699 -23 * 1529 121 17 0 chr4 111184901 111185140 -91143207 + L1MA8 LINE L1 5593 5835 -456 2239 146 48 54 chr4 111185175 111185655 -91142692 + L1MA8 LINE L1 5808 6284 -7 419 235 0 0 chr4 111185899 111185980 -91142367 - MIR SINE MIR -109 153 73 307 292 146 23 chr4 111186222 111186393 -91141954 - L3 LINE CR1 -2 1575 1384 459 233 0 0 chr4 111187494 111187580 -91140767 + MER21B LTR ERV1 5 90 -773 840 262 59 68 chr4 111187627 111188120 -91140227 + MER21B LTR ERV1 98 758 -105 180 0 0 0 chr4 111188129 111188149 -91140198 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 397 219 316 0 chr4 111188482 111188637 -91139710 - MIR SINE MIR -2 260 57 717 202 165 43 chr4 111188691 111188969 -91139378 + MLT1A1 LTR MaLR 1 365 0 190 319 128 14 chr4 111188988 111189129 -91139218 + L3 LINE CR1 1176 1332 -245 2184 120 0 0 chr4 111189456 111189748 -91138599 + AluSg SINE Alu 1 292 -18 22 0 0 0 chr4 111191466 111191488 -91136859 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 111192524 111192555 -91135792 + AT_rich Low_complexity Low_complexity 1 31 0 213 236 109 73 chr4 111192556 111192666 -91135681 - MIR SINE MIR -2 260 147 24 0 0 0 chr4 111192666 111192690 -91135657 + AT_rich Low_complexity Low_complexity 1 24 0 1591 311 66 3 chr4 111192706 111193310 -91135037 - MLT2F LTR ERVL -3 644 18 231 291 18 0 chr4 111193321 111193376 -91134971 - MIR SINE MIR -146 116 61 246 307 57 0 chr4 111193606 111193694 -91134653 - L2 LINE L2 0 3313 3221 210 257 191 9 chr4 111193831 111193936 -91134411 - L2 LINE L2 -8 3305 3182 1634 179 5 93 chr4 111194264 111194673 -91133674 - MLT1A2 LTR MaLR -1 373 1 195 330 32 21 chr4 111195520 111195614 -91132733 + MIR3 SINE MIR 111 205 -3 313 271 14 0 chr4 111195725 111195795 -91132552 + MIR SINE MIR 22 92 -116 454 239 87 43 chr4 111197712 111197850 -91130497 + MIR SINE MIR 32 175 -87 306 236 75 9 chr4 111197912 111198018 -91130329 - MER74B LTR ERVL -74 548 436 522 181 21 0 chr4 111198124 111198218 -91130129 - MER68 LTR ERV1 -464 98 3 1959 146 7 0 chr4 111198941 111199235 -91129112 - AluJb SINE Alu -16 296 1 627 304 53 28 chr4 111199271 111199518 -91128829 + MIR SINE MIR 10 262 0 663 279 47 49 chr4 111199814 111200179 -91128168 + L2 LINE L2 715 1078 -2236 248 250 0 57 chr4 111200267 111200355 -91127992 + MLT1J LTR MaLR 236 318 -193 203 320 90 0 chr4 111200598 111200676 -91127671 - L2 LINE L2 -576 2738 2654 730 303 88 38 chr4 111200913 111201332 -91127015 - LTR16A LTR ERVL -10 440 1 2296 107 0 7 chr4 111201362 111201671 -91126676 + AluSx SINE Alu 1 307 -5 323 297 97 56 chr4 111201676 111201871 -91126476 + MLT1K LTR MaLR 377 579 -9 453 240 164 29 chr4 111203260 111203468 -91124879 + MER106A DNA MER1_type 1 236 0 957 212 87 6 chr4 111203636 111203957 -91124390 - Charlie5 DNA MER1_type -28 2584 2238 265 108 0 0 chr4 111203960 111203997 -91124350 - MER117 DNA MER1_type -79 118 82 504 336 60 9 chr4 111204213 111204445 -91123902 + MIR SINE MIR 6 249 -13 7802 206 39 10 chr4 111204790 111206567 -91121780 + L1 LINE L1 3477 5306 -840 1384 37 0 0 chr4 111207540 111207704 -91120643 + L1PA8 LINE L1 6007 6170 -2 4687 213 12 30 chr4 111207854 111209068 -91119279 + L1PB1 LINE L1 4135 5327 -819 5035 72 5 0 chr4 111209169 111209832 -91118515 + L1PB1 LINE L1 5485 6150 -1 4698 135 9 4 chr4 111210578 111211387 -91116960 + L1PA16 LINE L1 5317 6164 -2 562 181 9 9 chr4 111211836 111211941 -91116406 + AluJb SINE Alu 201 305 -7 357 366 71 28 chr4 111212004 111212356 -91115991 + L2 LINE L2 2598 2964 -350 292 301 136 10 chr4 111212560 111212663 -91115684 + L2 LINE L2 3198 3313 0 344 239 69 64 chr4 111213550 111213738 -91114609 + L2 LINE L2 3116 3304 -9 271 185 31 15 chr4 111214118 111214183 -91114164 - MLT2F LTR ERVL -561 102 37 476 344 53 33 chr4 111214440 111214801 -91113546 + MLT1J2 LTR MaLR 65 432 -18 3590 111 21 7 chr4 111215563 111216122 -91112225 + L1MA1 LINE L1 5736 6302 0 15042 175 18 12 chr4 111216126 111217855 -91110492 + L1MA3 LINE L1 3167 4884 -2840 2452 73 0 3 chr4 111217855 111218156 -91110191 + AluY SINE Alu 1 300 -11 15042 175 18 12 chr4 111218156 111220960 -91107387 + L1MA3 LINE L1 4884 7723 -1 680 249 99 53 chr4 111221021 111221544 -91106803 + L1MEc LINE L1 1975 2521 -3875 1906 262 47 8 chr4 111222005 111222710 -91105637 + L1M2 LINE L1 2557 3399 -4167 563 355 93 48 chr4 111222734 111223041 -91105306 - MERVL LTR ERVL -1204 4281 3989 2475 60 0 0 chr4 111223041 111223342 -91105005 - AluY SINE Alu -10 301 1 563 355 93 48 chr4 111223342 111223982 -91104365 - MERVL LTR ERVL -1496 3989 3291 1165 72 0 0 chr4 111224092 111224244 -91104103 - L1PA8 LINE L1 -2 6170 6019 361 261 11 91 chr4 111224269 111224533 -91103814 - L1MEd LINE L1 -4910 1209 967 326 291 28 56 chr4 111224630 111224809 -91103538 - L1MEd LINE L1 -5365 754 581 2160 97 3 14 chr4 111226927 111227253 -91101094 - AluSq SINE Alu 0 313 1 219 248 38 166 chr4 111227450 111227607 -91100740 + MIR SINE MIR 17 153 -109 * 226 289 59 44 chr4 111227606 111227741 -91100606 + L2 LINE L2 3171 3307 -6 483 289 30 78 chr4 111227898 111228042 -91100305 + L1MEc LINE L1 1311 1460 -4936 1750 181 20 0 chr4 111228042 111228335 -91100012 + AluJb SINE Alu 9 307 -5 483 289 30 78 chr4 111228335 111228726 -91099621 + L1MEc LINE L1 1460 1820 -4576 852 156 0 0 chr4 111228818 111228946 -91099401 + FLAM_C SINE Alu 5 132 -1 5919 231 25 10 chr4 111228973 111230242 -91098105 + L1PA12 LINE L1 10 1297 -6284 220 271 0 0 chr4 111230397 111230445 -91097902 - MER5B DNA MER1_type -6 172 125 279 0 0 0 chr4 111230540 111230571 -91097776 + (T)n Simple_repeat Simple_repeat 1 31 0 28 48 0 0 chr4 111231166 111231208 -91097139 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr4 111232733 111232761 -91095586 + AT_rich Low_complexity Low_complexity 1 28 0 192 379 0 0 chr4 111232801 111232888 -91095459 + L2 LINE L2 2666 2752 -562 193 341 39 87 chr4 111233449 111233678 -91094669 + L2 LINE L2 2842 3059 -213 23 0 0 0 chr4 111234588 111234611 -91093736 + AT_rich Low_complexity Low_complexity 1 23 0 490 174 35 0 chr4 111235107 111235193 -91093154 + U6 snRNA snRNA 13 101 -6 1598 260 3 15 chr4 111235193 111235585 -91092762 + L1M1 LINE L1 185 571 -6994 955 168 50 0 chr4 111237786 111237965 -91090382 - MER5A DNA MER1_type -1 188 1 433 267 186 18 chr4 111238140 111238361 -91089986 + MIR SINE MIR 5 262 0 221 306 94 55 chr4 111238406 111238661 -91089686 + L2 LINE L2 2493 2757 -557 13044 168 34 17 chr4 111239225 111244076 -91084271 + L1M1 LINE L1 1195 6126 -1439 5794 97 19 6 chr4 111244074 111244960 -91083387 + L1PA11 LINE L1 5276 6173 -1 * 974 140 0 0 chr4 111244971 111245135 -91083212 + L1M1 LINE L1 6901 7064 -660 1041 138 39 47 chr4 111245137 111245369 -91082978 - THE1C LTR MaLR -2 373 144 514 229 11 117 chr4 111245450 111245629 -91082718 + MER5B DNA MER1_type 16 175 -3 752 179 93 0 chr4 111246853 111246993 -91081354 + MER5B DNA MER1_type 7 159 -19 591 261 69 11 chr4 111247808 111247996 -91080351 + MIR SINE MIR 51 249 -13 260 287 92 11 chr4 111248508 111248595 -91079752 + MIR3 SINE MIR 13 106 -102 290 314 51 36 chr4 111248612 111248749 -91079598 - MIR SINE MIR -80 182 44 24 32 0 0 chr4 111248879 111248910 -91079437 + AT_rich Low_complexity Low_complexity 1 31 0 270 297 29 14 chr4 111249643 111249781 -91078566 + L1ME4a LINE L1 5757 5896 -225 384 174 83 9 chr4 111249855 111249964 -91078383 + L1ME4a LINE L1 6002 6118 -3 415 290 34 77 chr4 111250703 111250910 -91077437 - MIR SINE MIR -64 198 1 233 179 0 60 chr4 111252093 111252160 -91076187 - MLT1A2 LTR MaLR 0 374 312 1196 113 48 0 chr4 111252331 111252517 -91075830 + MER30 DNA MER1_type 2 196 -34 369 0 0 0 chr4 111254047 111254088 -91074259 + (CA)n Simple_repeat Simple_repeat 1 41 0 180 111 0 0 chr4 111255236 111255263 -91073084 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 1799 215 0 0 chr4 111255572 111255944 -91072403 + AluJo SINE Alu 1 372 0 335 306 68 27 chr4 111257772 111257994 -91070353 + MLT1L LTR MaLR 347 577 -38 12148 112 11 28 chr4 111257994 111260665 -91067682 + L1PA7 LINE L1 2 2695 -3766 18573 101 8 3 chr4 111260669 111264264 -91064083 + L1PA7 LINE L1 2775 6456 -13 20064 182 28 11 chr4 111264753 111270247 -91058100 + L1PA11 LINE L1 1229 7604 -8 318 298 97 0 chr4 111270410 111270534 -91057813 + L1ME3A LINE L1 6027 6162 -8 355 231 70 19 chr4 111270874 111271030 -91057317 - MER103 DNA DNA 0 166 3 2212 110 0 0 chr4 111271048 111271340 -91057007 + AluSq SINE Alu 6 297 -16 393 281 180 11 chr4 111271373 111271551 -91056796 - L2 LINE L2 -1 3312 3105 945 274 25 61 chr4 111273334 111273696 -91054651 - L2 LINE L2 -5 3308 2960 233 353 24 0 chr4 111274293 111274378 -91053969 - L2 LINE L2 0 3272 3186 2411 87 3 10 chr4 111274424 111274736 -91053611 + AluSg SINE Alu 1 310 0 2344 97 3 0 chr4 111276617 111276916 -91051431 + AluSq SINE Alu 1 300 -13 188 340 0 0 chr4 111276916 111276966 -91051381 - L2 LINE L2 -20 3293 3244 237 326 83 28 chr4 111277727 111277908 -91050439 - MIR3 SINE MIR -1 207 17 23 54 0 0 chr4 111278519 111278556 -91049791 + AT_rich Low_complexity Low_complexity 1 37 0 312 333 87 0 chr4 111278897 111279047 -91049300 - HERV16 LTR ERVL -2262 3502 3340 477 370 46 8 chr4 111279351 111279719 -91048628 - HERV16 LTR ERVL -4576 420 39 423 303 26 7 chr4 111279756 111279911 -91048436 - LTR16B LTR ERVL -2 462 305 405 287 92 23 chr4 111280395 111280569 -91047778 - MIR SINE MIR -1 261 76 24 32 0 0 chr4 111280674 111280705 -91047642 + AT_rich Low_complexity Low_complexity 1 31 0 1637 106 0 13 chr4 111281386 111281612 -91046735 + AluSg/x SINE Alu 90 312 0 839 205 107 19 chr4 111281699 111281914 -91046433 + MIR SINE MIR 15 248 -14 21 0 0 0 chr4 111282941 111282962 -91045385 + AT_rich Low_complexity Low_complexity 1 21 0 317 376 40 0 chr4 111283614 111283763 -91044584 + MIR SINE MIR 58 212 -50 194 191 0 16 chr4 111283817 111283880 -91044467 + (TAA)n Simple_repeat Simple_repeat 3 64 0 945 295 69 57 chr4 111284639 111284999 -91043348 + MLT2E LTR ERVL 10 377 -251 2951 59 50 57 chr4 111284999 111285477 -91042870 - L1MA1 LINE L1 0 6302 5828 945 295 69 57 chr4 111285477 111285553 -91042794 + MLT2E LTR ERVL 377 451 -177 734 328 47 19 chr4 111285728 111286091 -91042256 + L1MEd LINE L1 407 779 -5340 490 304 57 22 chr4 111286275 111286505 -91041842 + L1MEd LINE L1 1011 1248 -4871 2131 120 10 3 chr4 111286594 111286926 -91041421 - AluSq SINE Alu 0 313 2 561 240 0 8 chr4 111287002 111287127 -91041220 + MER96 DNA MER1_type? 51 174 -1 769 220 99 22 chr4 111287250 111287482 -91040865 - L1ME1 LINE L1 -19 6147 5898 2333 68 24 0 chr4 111287681 111287973 -91040374 + AluSp SINE Alu 1 299 -14 22 56 0 0 chr4 111288312 111288348 -91039999 + AT_rich Low_complexity Low_complexity 1 36 0 376 202 46 144 chr4 111288869 111289042 -91039305 + LTR33A LTR ERVL 41 196 -327 1081 269 123 20 chr4 111289047 111289432 -91038915 - MLT1H LTR MaLR -175 420 4 287 247 129 0 chr4 111289484 111289577 -91038770 + LTR33A LTR ERVL 369 473 -50 208 288 0 30 chr4 111289747 111289813 -91038534 + L2 LINE L2 2328 2391 -923 941 168 12 6 chr4 111289876 111290037 -91038310 + MER58B DNA MER1_type 180 341 0 275 336 80 7 chr4 111290120 111290257 -91038090 + L2 LINE L2 2607 2753 -561 216 319 116 14 chr4 111290411 111290480 -91037867 + L2 LINE L2 3208 3283 -30 432 268 61 43 chr4 111291165 111291329 -91037018 - MER63A DNA MER1_type 0 210 44 243 192 0 0 chr4 111291352 111291425 -91036922 + (TA)n Simple_repeat Simple_repeat 2 74 0 191 313 0 0 chr4 111291492 111291559 -91036788 - MIR SINE MIR -1 261 195 1100 194 30 5 chr4 111291561 111291762 -91036585 - MER63A DNA MER1_type -4 206 1 1394 173 62 111 chr4 111292027 111292443 -91035904 - MSTD LTR MaLR 0 396 1 2449 110 72 12 chr4 111293774 111294174 -91034173 - MSTA LTR MaLR -4 424 1 23341 39 3 0 chr4 111294397 111298039 -91030308 - L1PA4 LINE L1 -3 6152 2503 18264 129 52 5 chr4 111298509 111301394 -91026953 - Tigger3(Golem) DNA MER2_type -5 3024 2 324 70 0 0 chr4 111301734 111301777 -91026570 + (TG)n Simple_repeat Simple_repeat 2 44 0 260 207 49 37 chr4 111302105 111302187 -91026160 + GA-rich Low_complexity Low_complexity 2 84 0 375 335 157 51 chr4 111303282 111303754 -91024593 + L2 LINE L2 1752 2273 -1041 292 210 67 59 chr4 111304023 111304142 -91024205 + LTR16C LTR ERVL 319 438 -53 3685 145 11 14 chr4 111304156 111304805 -91023542 - L1MC1 LINE L1 0 6333 5687 1114 162 105 32 chr4 111304814 111304890 -91023457 + THE1C LTR MaLR 111 180 -195 222 37 0 0 chr4 111304890 111304917 -91023430 + (TC)n Simple_repeat Simple_repeat 1 27 0 1114 162 105 32 chr4 111304917 111305087 -91023260 + THE1C LTR MaLR 180 375 0 289 98 49 66 chr4 111305087 111305148 -91023199 - L1MC1 LINE L1 -687 5646 5587 810 135 0 0 chr4 111305155 111305266 -91023081 - AluJb SINE Alu -196 116 6 1633 143 29 4 chr4 111305275 111305555 -91022792 - L1MC1 LINE L1 -728 5605 5319 1360 153 10 0 chr4 111305753 111305962 -91022385 + AluSg/x SINE Alu 82 292 -20 515 165 17 35 chr4 111306347 111306462 -91021885 + L1PA8 LINE L1 6049 6161 -11 21 36 0 0 chr4 111306462 111306490 -91021857 + AT_rich Low_complexity Low_complexity 1 28 0 643 363 47 17 chr4 111306605 111307027 -91021320 + HERV16 LTR ERVL 709 1143 -3853 463 385 7 25 chr4 111307055 111307341 -91021006 + HERV16 LTR ERVL 1215 1495 -3501 1580 309 87 48 chr4 111307402 111308655 -91019692 + HERV16 LTR ERVL 1688 2962 -2239 454 327 63 15 chr4 111308663 111308958 -91019389 + LTR16C LTR ERVL 1 344 -147 1117 250 62 40 chr4 111308969 111309409 -91018938 + L1MB7 LINE L1 2968 3423 -2723 1718 181 17 3 chr4 111309409 111309707 -91018640 + AluJb SINE Alu 7 308 -4 1117 250 62 40 chr4 111309707 111309794 -91018553 + L1MB7 LINE L1 3423 3507 -2639 1010 196 39 15 chr4 111309815 111310019 -91018328 + AluJb SINE Alu 87 295 -17 5848 234 43 10 chr4 111310021 111311654 -91016693 + L1MB7 LINE L1 3520 5205 -941 1711 227 25 6 chr4 111311657 111312014 -91016333 + MLT2D LTR ERVL 3 366 -48 2221 96 6 16 chr4 111312015 111312327 -91016020 + AluSc SINE Alu 1 309 0 9937 129 17 22 chr4 111312383 111313541 -91014806 - Tigger1 DNA MER2_type -9 2409 1260 2089 127 3 29 chr4 111313541 111313849 -91014498 + AluSq SINE Alu 2 301 -12 9937 129 17 22 chr4 111313849 111314307 -91014040 - Tigger1 DNA MER2_type -1158 1260 801 921 94 8 0 chr4 111314673 111314801 -91013546 - AluSg/x SINE Alu -8 304 176 6309 93 12 1 chr4 111314987 111315868 -91012479 + L1PA11 LINE L1 5284 6174 0 26 0 0 0 chr4 111315977 111316003 -91012344 + AT_rich Low_complexity Low_complexity 1 26 0 4888 144 20 12 chr4 111318341 111319149 -91009198 - Tigger1 DNA MER2_type -1602 816 3 207 0 0 0 chr4 111319149 111319172 -91009175 + (TG)n Simple_repeat Simple_repeat 2 24 0 2433 159 42 68 chr4 111319208 111319321 -91009026 + L1MB7 LINE L1 5202 5316 -868 3667 52 9 0 chr4 111319321 111319782 -91008565 - L1PA6 LINE L1 -6 6148 5684 2433 159 42 68 chr4 111319782 111320307 -91008040 + L1MB7 LINE L1 5316 5832 -352 1271 180 0 60 chr4 111320619 111320902 -91007445 + L1MB7 LINE L1 5811 6076 -108 390 42 0 0 chr4 111322613 111322661 -91005686 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 27 29 0 0 chr4 111322725 111322759 -91005588 + AT_rich Low_complexity Low_complexity 1 34 0 1290 179 111 23 chr4 111322932 111323194 -91005153 + AluJb SINE Alu 1 285 -27 6255 113 69 31 chr4 111324419 111325564 -91002783 + SVA Other Other 196 1383 -3 624 182 0 23 chr4 111325586 111325732 -91002615 + L1ME1 LINE L1 5700 5827 -339 229 342 2 16 chr4 111326017 111326103 -91002244 + MIR SINE MIR 71 156 -52 787 247 123 4 chr4 111326133 111326360 -91001987 + MIR SINE MIR 1 254 -8 399 259 163 24 chr4 111326520 111326686 -91001661 + MIR3 SINE MIR 5 193 -15 21 0 0 0 chr4 111327251 111327272 -91001075 + AT_rich Low_complexity Low_complexity 1 21 0 573 214 125 125 chr4 111327465 111327961 -91000386 + L1MC4 LINE L1 7547 8042 0 30 0 0 0 chr4 111328312 111328342 -91000005 + AT_rich Low_complexity Low_complexity 1 30 0 415 274 0 0 chr4 111328692 111328794 -90999553 + L1ME LINE L1 5522 5623 -498 252 322 11 11 chr4 111328806 111328896 -90999451 + GA-rich Low_complexity Low_complexity 5 94 0 2179 113 7 3 chr4 111329189 111329489 -90998858 - AluSg SINE Alu -9 301 1 896 259 18 14 chr4 111329892 111330112 -90998235 + MIR SINE MIR 16 236 -26 185 373 104 22 chr4 111330780 111330914 -90997433 - L2 LINE L2 -5 3267 3123 1952 129 11 11 chr4 111331813 111332100 -90996247 + AluSx SINE Alu 1 287 -25 190 321 0 0 chr4 111332171 111332224 -90996123 + L2 LINE L2 3216 3268 -4 424 211 32 21 chr4 111332348 111332443 -90995904 + MER5A DNA MER1_type 11 106 -83 2358 88 7 3 chr4 111332491 111332798 -90995549 + AluSq SINE Alu 1 308 -5 206 146 188 0 chr4 111332975 111333023 -90995324 + MIR SINE MIR 84 140 -122 1330 266 74 21 chr4 111333832 111334359 -90993988 + MLT1H1 LTR MaLR 1 555 0 211 318 73 45 chr4 111335491 111335601 -90992746 + L2 LINE L2 2949 3061 -252 882 207 30 18 chr4 111335601 111335812 -90992535 + MLT1E LTR MaLR 3 203 -421 303 107 13 107 chr4 111335812 111335871 -90992476 + L1M2 LINE L1 5430 5482 -830 1861 158 14 0 chr4 111335871 111336163 -90992184 + AluSx SINE Alu 1 296 -16 303 107 13 107 chr4 111336163 111336178 -90992169 + L1M2 LINE L1 5482 5497 -815 1119 176 34 4 chr4 111336178 111336401 -90991946 + L1MA8 LINE L1 6043 6287 -4 2142 125 3 3 chr4 111336446 111336759 -90991588 + AluSq SINE Alu 1 313 0 1050 216 176 0 chr4 111336783 111337126 -90991221 + MLT1E LTR MaLR 222 590 -3 43 35 0 0 chr4 111337203 111337260 -90991087 + AT_rich Low_complexity Low_complexity 1 57 0 791 159 0 8 chr4 111337458 111337584 -90990763 + FLAM_C SINE Alu 1 125 -8 2813 16 0 0 chr4 111337606 111337916 -90990431 + AluY SINE Alu 1 310 -1 23 0 0 0 chr4 111338100 111338123 -90990224 + AT_rich Low_complexity Low_complexity 1 23 0 332 320 16 8 chr4 111338259 111338381 -90989966 + LTR33 LTR ERVL 15 137 -384 615 147 0 0 chr4 111338405 111338521 -90989826 + (ATATG)n Simple_repeat Simple_repeat 2 117 0 38 68 0 0 chr4 111338524 111338597 -90989750 + AT_rich Low_complexity Low_complexity 1 73 0 483 185 205 26 chr4 111338663 111338858 -90989489 - MER33 DNA MER1_type -94 230 1 373 293 63 48 chr4 111338858 111339204 -90989143 + LTR33 LTR ERVL 131 518 -3 2015 107 7 4 chr4 111339499 111339770 -90988577 - AluSq SINE Alu -22 291 20 2254 77 42 0 chr4 111339894 111340181 -90988166 - AluSp SINE Alu -14 299 1 1338 195 79 8 chr4 111340189 111340456 -90987891 - AluJo SINE Alu -25 287 2 677 330 92 51 chr4 111342640 111343186 -90985161 - MLT1K LTR MaLR -10 578 11 676 299 91 72 chr4 111344455 111344883 -90983464 - MLT1K LTR MaLR -6 582 147 1715 125 38 26 chr4 111344889 111345153 -90983194 + AluSx SINE Alu 1 267 -45 302 335 109 28 chr4 111345328 111345622 -90982725 + L2 LINE L2 2790 3093 -179 1864 143 3 31 chr4 111346070 111346364 -90981983 - AluSx SINE Alu -26 286 1 251 284 88 10 chr4 111346364 111346466 -90981881 + MIR SINE MIR 72 181 -81 14244 137 28 10 chr4 111346481 111347995 -90980352 - Tigger1 DNA MER2_type 0 2418 843 2438 81 0 3 chr4 111347995 111348305 -90980042 - AluSc SINE Alu 0 309 1 14244 137 28 10 chr4 111348305 111349163 -90979184 - Tigger1 DNA MER2_type -1575 843 2 2338 97 3 3 chr4 111349314 111349622 -90978725 + AluSq SINE Alu 1 308 -5 492 216 0 0 chr4 111349797 111349885 -90978462 + Tigger1 DNA MER2_type 2318 2405 -13 1277 326 116 35 chr4 111350068 111351194 -90977153 + L2 LINE L2 1606 2821 -493 405 321 43 59 chr4 111351267 111351454 -90976893 + L2 LINE L2 2897 3080 -192 423 0 0 0 chr4 111352858 111352905 -90975442 + (CA)n Simple_repeat Simple_repeat 2 48 0 208 171 24 0 chr4 111352909 111352950 -90975397 + CT-rich Low_complexity Low_complexity 1 42 0 230 235 173 12 chr4 111353332 111353413 -90974934 + MIR SINE MIR 47 140 -122 188 301 12 36 chr4 111353444 111353527 -90974820 + MIR SINE MIR 132 212 -50 246 32 0 0 chr4 111354007 111354038 -90974309 + (TG)n Simple_repeat Simple_repeat 2 32 0 279 234 30 144 chr4 111355138 111355305 -90973042 + MER5B DNA MER1_type 1 148 -30 252 320 0 48 chr4 111355959 111356062 -90972285 + MIR SINE MIR 152 249 -13 623 161 0 51 chr4 111356775 111356893 -90971454 - FRAM SINE Alu -12 164 53 32 75 0 0 chr4 111356998 111357065 -90971282 + AT_rich Low_complexity Low_complexity 1 67 0 35 41 0 0 chr4 111357155 111357204 -90971143 + AT_rich Low_complexity Low_complexity 1 49 0 397 102 0 0 chr4 111357528 111357587 -90970760 + AluSg SINE Alu 24 82 -218 852 118 8 0 chr4 111357589 111357716 -90970631 + AluSg/x SINE Alu 185 312 0 331 252 69 30 chr4 111358793 111358924 -90969423 - MIR SINE MIR -126 136 1 2057 77 84 0 chr4 111358991 111359276 -90969071 + AluSg SINE Alu 1 309 -1 224 250 0 75 chr4 111360406 111360526 -90967821 + G-rich Low_complexity Low_complexity 4 114 0 312 306 157 48 chr4 111360789 111361083 -90967264 - L1M2 LINE L1 -5848 1001 676 263 154 33 44 chr4 111362280 111362363 -90965984 + CT-rich Low_complexity Low_complexity 1 84 -6 255 61 0 0 chr4 111362363 111362396 -90965951 + (CA)n Simple_repeat Simple_repeat 1 33 0 1620 184 3 7 chr4 111365354 111365636 -90962711 + AluJo SINE Alu 5 285 -27 37 62 0 0 chr4 111365771 111365836 -90962511 + AT_rich Low_complexity Low_complexity 1 65 0 558 152 136 32 chr4 111365882 111366007 -90962340 + FLAM_C SINE Alu 1 138 -5 1544 107 0 0 chr4 111366105 111366310 -90962037 + AluSx SINE Alu 1 205 -107 1964 135 3 14 chr4 111366310 111366606 -90961741 + AluSx SINE Alu 3 295 -17 2100 136 3 0 chr4 111366899 111367207 -90961140 - AluSx SINE Alu -1 311 3 924 175 34 112 chr4 111367394 111367663 -90960684 - L1MD2 LINE L1 -3 6356 6109 819 229 16 31 chr4 111367870 111368062 -90960285 - MIR SINE MIR -71 191 3 2199 197 73 0 chr4 111368134 111368626 -90959721 + L1MB7 LINE L1 5657 6184 0 436 151 151 0 chr4 111368760 111368833 -90959514 + AluJ/FLAM SINE Alu 17 100 -212 1758 175 0 0 chr4 111369057 111369348 -90958999 + AluJb SINE Alu 3 293 -19 28 29 0 0 chr4 111371622 111371657 -90956690 + AT_rich Low_complexity Low_complexity 1 35 0 2030 133 10 0 chr4 111371980 111372288 -90956059 - AluSx SINE Alu -1 311 1 2282 92 3 9 chr4 111373552 111373867 -90954480 - AluSp SINE Alu 0 313 1 2177 66 37 0 chr4 111374056 111374329 -90954018 + AluSc SINE Alu 11 293 -16 225 83 0 0 chr4 111375071 111375107 -90953240 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1965 97 0 0 chr4 111375109 111375368 -90952979 - AluSg1 SINE Alu -32 277 19 398 286 23 23 chr4 111377676 111377809 -90950538 - MIR3 SINE MIR -1 207 75 434 329 49 6 chr4 111377820 111377984 -90950363 - MIR SINE MIR 0 262 92 441 0 0 0 chr4 111378119 111378168 -90950179 + (GA)n Simple_repeat Simple_repeat 1 49 0 306 0 0 0 chr4 111378167 111378201 -90950146 + (TG)n Simple_repeat Simple_repeat 2 35 0 * 1999 113 68 53 chr4 111378201 111378599 -90949748 - L1MA9 LINE L1 -4 6308 5905 494 348 14 19 chr4 111378606 111378816 -90949531 + MIR SINE MIR 48 256 -6 2180 115 0 3 chr4 111379405 111379709 -90948638 + AluSx SINE Alu 1 303 -9 269 291 27 47 chr4 111380229 111380377 -90947970 - HAL1b LINE L1 -458 890 746 206 254 0 28 chr4 111380848 111380919 -90947428 + T-rich Low_complexity Low_complexity 2 70 0 681 283 113 30 chr4 111380966 111381557 -90946790 - HAL1 LINE L1 -849 1658 1019 397 191 57 14 chr4 111381674 111381815 -90946532 + (TATATG)n Simple_repeat Simple_repeat 5 151 0 1393 317 15 26 chr4 111382265 111382847 -90945500 + L2 LINE L2 2495 3067 -246 6378 144 10 3 chr4 111382902 111384456 -90943891 - L1PB1 LINE L1 0 6151 4586 486 221 38 46 chr4 111384502 111384633 -90943714 + L2 LINE L2 3175 3304 -9 868 191 0 7 chr4 111384672 111384819 -90943528 + FAM SINE Alu 22 167 -18 386 243 47 0 chr4 111385469 111385576 -90942771 + L2 LINE L2 3199 3310 -3 227 297 0 54 chr4 111386332 111386406 -90941941 + MIR3 SINE MIR 118 187 -21 2584 147 14 25 chr4 111386472 111386909 -90941438 - Tigger2a DNA MER2_type 0 434 3 2029 110 0 48 chr4 111387550 111387859 -90940488 + AluSg SINE Alu 1 294 -16 6926 189 52 42 chr4 111388728 111390431 -90937916 + L1MC1 LINE L1 76 1987 -4620 5499 193 39 20 chr4 111390434 111392113 -90936234 + L1MC1 LINE L1 4244 5981 -632 2089 131 0 16 chr4 111392113 111392427 -90935920 + AluSx SINE Alu 1 309 -3 5499 193 39 20 chr4 111392427 111393035 -90935312 + L1MC1 LINE L1 5981 6576 -37 322 0 0 0 chr4 111393059 111393100 -90935247 + L1PA3 LINE L1 6112 6152 -3 1914 122 68 49 chr4 111393154 111393522 -90934825 - THE1C LTR MaLR 0 375 1 185 218 92 58 chr4 111394036 111394123 -90934224 + L3 LINE CR1 1034 1123 -454 2079 128 10 0 chr4 111394955 111395251 -90933096 - AluSx SINE Alu -13 299 1 34 55 0 0 chr4 111396273 111396328 -90932019 + AT_rich Low_complexity Low_complexity 1 55 0 222 392 94 6 chr4 111397793 111397974 -90930373 - MIR3 SINE MIR -1 207 11 26 30 0 0 chr4 111398508 111398541 -90929806 + AT_rich Low_complexity Low_complexity 1 33 0 213 94 0 0 chr4 111399033 111399065 -90929282 + (TG)n Simple_repeat Simple_repeat 2 33 0 2360 77 3 0 chr4 111399813 111400111 -90928236 + AluY SINE Alu 3 301 -10 1916 161 0 10 chr4 111400257 111400567 -90927780 + AluJb SINE Alu 1 307 -5 2236 105 13 3 chr4 111400781 111401085 -90927262 - AluSx SINE Alu -5 307 1 3892 176 7 17 chr4 111402118 111402864 -90925483 + L1MB4 LINE L1 5443 6180 0 1932 192 31 48 chr4 111402874 111403353 -90924994 + L1MB7 LINE L1 5694 6164 -20 337 291 190 13 chr4 111403413 111403495 -90924852 + MIR SINE MIR 52 118 -144 240 111 0 0 chr4 111403495 111403531 -90924816 + (TAA)n Simple_repeat Simple_repeat 2 37 0 337 291 190 13 chr4 111403531 111403606 -90924741 + MIR SINE MIR 118 237 -25 222 387 40 16 chr4 111404060 111404184 -90924163 + L2 LINE L2 3134 3260 -12 248 286 264 0 chr4 111404230 111404370 -90923977 + MER5B DNA MER1_type 2 178 0 658 198 0 0 chr4 111405381 111405497 -90922850 - FLAM_A SINE Alu -16 117 2 211 300 169 12 chr4 111406706 111406866 -90921481 + MIR SINE MIR 71 255 -7 799 316 58 29 chr4 111406922 111407298 -90921049 - L2 LINE L2 -4 3309 2923 213 320 156 22 chr4 111407839 111408064 -90920283 - L2 LINE L2 -686 2628 2374 376 296 72 7 chr4 111408258 111408410 -90919937 - MIR3 SINE MIR -4 204 43 21 0 0 0 chr4 111408431 111408452 -90919895 + AT_rich Low_complexity Low_complexity 1 21 0 191 230 138 23 chr4 111409448 111409535 -90918812 + MIR SINE MIR 88 184 -78 2002 163 15 15 chr4 111409763 111410106 -90918241 + MER2 DNA MER2_type 1 343 -1 180 276 61 20 chr4 111410284 111410382 -90917965 + L2 LINE L2 1360 1461 -1853 274 343 71 6 chr4 111411004 111411173 -90917174 + L2 LINE L2 3111 3290 -23 22 0 0 0 chr4 111412173 111412195 -90916152 + AT_rich Low_complexity Low_complexity 1 22 0 2096 113 3 0 chr4 111412367 111412685 -90915662 + AluSq SINE Alu 1 319 0 264 333 11 32 chr4 111413014 111413107 -90915240 - L3 LINE CR1 -57 1520 1430 446 337 33 25 chr4 111413564 111413807 -90914540 - L3 LINE CR1 -562 1015 771 6350 78 72 4 chr4 111413848 111414701 -90913646 - L1PA13 LINE L1 -2 6161 5276 189 0 0 0 chr4 111414701 111414722 -90913625 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6350 78 72 4 chr4 111414722 111414887 -90913460 - L1PA13 LINE L1 -887 5276 5124 2213 129 0 0 chr4 111414962 111415271 -90913076 - AluSc SINE Alu 0 309 1 1351 246 30 12 chr4 111415736 111416069 -90912278 - MER74B LTR ERVL -283 339 1 230 306 15 13 chr4 111416726 111416801 -90911546 + MIR SINE MIR 30 105 -103 577 245 45 7 chr4 111417046 111417201 -90911146 + MIR SINE MIR 102 262 0 306 0 0 0 chr4 111418481 111418515 -90909832 + (TG)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr4 111418516 111418540 -90909807 + AT_rich Low_complexity Low_complexity 1 24 0 626 302 94 71 chr4 111418736 111419504 -90908843 + L1M4 LINE L1 4371 5166 -980 1581 91 9 9 chr4 111419504 111419774 -90908573 + AluSc SINE Alu 61 330 0 626 302 94 71 chr4 111419774 111419907 -90908440 + L1M4 LINE L1 5166 5294 -852 1326 300 73 23 chr4 111420200 111420680 -90907667 - MLT1K LTR MaLR -62 526 23 2883 181 27 14 chr4 111420685 111421277 -90907070 - L1MD1 LINE L1 -14 6228 5629 1372 131 14 33 chr4 111422191 111422398 -90905949 + AluJo SINE Alu 11 215 -97 764 164 0 0 chr4 111422398 111422514 -90905833 - AluJo/FLAM SINE Alu -186 116 1 2393 62 7 3 chr4 111422521 111422810 -90905537 - AluY SINE Alu -20 291 2 936 133 12 18 chr4 111423246 111423411 -90904936 - AluSg/x SINE Alu -16 296 133 180 0 0 0 chr4 111423537 111423557 -90904790 + (A)n Simple_repeat Simple_repeat 1 20 0 334 360 34 6 chr4 111424418 111424593 -90903754 - L2 LINE L2 -676 2638 2459 627 312 102 33 chr4 111424958 111425320 -90903027 + LTR67 LTR ERVL 113 499 -58 848 182 14 0 chr4 111425339 111425487 -90902860 - FRAM SINE Alu -16 150 1 2129 120 3 0 chr4 111425502 111425794 -90902553 - AluSx SINE Alu -17 295 3 28 29 0 0 chr4 111425798 111425833 -90902514 + AT_rich Low_complexity Low_complexity 1 35 0 2524 49 3 3 chr4 111425833 111426140 -90902207 - AluY SINE Alu 0 311 5 675 173 68 0 chr4 111426201 111426356 -90901991 + MER67D LTR ERV1 1 165 -359 21 0 0 0 chr4 111426579 111426600 -90901747 + AT_rich Low_complexity Low_complexity 1 21 0 182 195 16 55 chr4 111427549 111427677 -90900670 + (TATATG)n Simple_repeat Simple_repeat 4 126 0 290 316 184 0 chr4 111428226 111428384 -90899963 + L2 LINE L2 2678 2864 -450 323 301 108 75 chr4 111428505 111428784 -90899563 + L2 LINE L2 2985 3272 0 870 128 0 0 chr4 111429117 111429234 -90899113 - AluSg/x SINE Alu -49 261 145 2189 106 3 3 chr4 111429236 111429538 -90898809 - AluSp SINE Alu -11 302 1 2177 99 33 3 chr4 111429540 111429844 -90898503 - AluSq SINE Alu 0 313 1 1057 137 68 119 chr4 111430490 111430654 -90897693 + MER21A LTR ERV1 1 147 -784 1538 152 11 26 chr4 111430654 111430918 -90897429 - AluJb SINE Alu -7 305 46 1057 137 68 119 chr4 111430918 111431031 -90897316 + MER21A LTR ERV1 147 264 -667 2570 171 94 27 chr4 111431037 111431558 -90896789 + MER21A LTR ERV1 376 931 0 806 252 9 23 chr4 111432757 111432975 -90895372 + MER58C DNA MER1_type 1 215 0 225 0 0 0 chr4 111433285 111433310 -90895037 + (TA)n Simple_repeat Simple_repeat 2 26 0 5635 195 74 18 chr4 111433721 111435175 -90893172 + L1 LINE L1 3199 4734 -1412 1073 100 158 37 chr4 111435868 111436058 -90892289 - L1PA11 LINE L1 -21 6153 5941 185 315 37 0 chr4 111436450 111436504 -90891843 - L2 LINE L2 -823 2491 2436 239 263 0 0 chr4 111437940 111438020 -90890327 + (CAG)n Simple_repeat Simple_repeat 3 82 0 189 262 0 0 chr4 111439215 111439276 -90889071 + (TA)n Simple_repeat Simple_repeat 2 62 0 360 64 0 0 chr4 111440043 111440090 -90888257 + (TG)n Simple_repeat Simple_repeat 2 48 0 2323 97 10 6 chr4 111440095 111440406 -90887941 - AluSx SINE Alu 0 312 1 27 29 0 0 chr4 111440520 111440554 -90887793 + AT_rich Low_complexity Low_complexity 1 34 0 224 263 41 23 chr4 111440683 111440854 -90887493 + (TAATG)n Simple_repeat Simple_repeat 4 177 0 287 246 0 0 chr4 111441212 111441269 -90887078 - L2 LINE L2 -2 3270 3214 21 0 0 0 chr4 111441556 111441577 -90886770 + AT_rich Low_complexity Low_complexity 1 21 0 239 347 73 8 chr4 111441861 111441985 -90886362 + MIR SINE MIR 16 147 -61 1941 161 0 7 chr4 111442282 111442592 -90885755 + AluJb SINE Alu 1 308 -4 3416 17 0 0 chr4 111442971 111443382 -90884965 + L1HS LINE L1 5745 6155 0 27 49 0 0 chr4 111443680 111443721 -90884626 + AT_rich Low_complexity Low_complexity 1 41 0 690 254 53 14 chr4 111444716 111444925 -90883422 + MIR SINE MIR 44 260 -2 526 168 88 0 chr4 111445293 111445418 -90882929 - L1MC1 LINE L1 -156 6177 6042 28 0 0 0 chr4 111445572 111445600 -90882747 + AT_rich Low_complexity Low_complexity 1 28 0 1776 184 13 29 chr4 111448311 111448412 -90879935 - L1MB2 LINE L1 -267 5904 5803 1748 129 85 19 chr4 111448412 111448729 -90879618 - MER44D DNA MER2_type 0 609 2 1776 184 13 29 chr4 111448729 111449007 -90879340 - L1MB2 LINE L1 -368 5803 5531 761 286 12 62 chr4 111449397 111449719 -90878628 - L2 LINE L2 0 3313 3008 288 359 16 16 chr4 111450812 111450940 -90877407 + MIR3 SINE MIR 78 205 -3 891 267 15 0 chr4 111451494 111451700 -90876647 + Tigger7 DNA MER2_type 2 210 -2277 425 193 0 83 chr4 111451719 111451828 -90876519 + Tigger7 DNA MER2_type 2488 2587 0 2225 110 3 7 chr4 111451844 111452153 -90876194 - AluSx SINE Alu -4 308 1 2823 168 55 44 chr4 111452167 111452697 -90875650 - L1MA4A LINE L1 -243 6060 5538 2476 58 7 10 chr4 111452697 111453006 -90875341 + AluY SINE Alu 1 308 -3 2823 168 55 44 chr4 111453006 111453041 -90875306 - L1MA4A LINE L1 -765 5538 5505 186 43 0 0 chr4 111453041 111453064 -90875283 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2823 168 55 44 chr4 111453064 111453182 -90875165 - L1MA4A LINE L1 -798 5505 5368 2390 202 30 5 chr4 111453247 111453822 -90874525 - L1MA4A LINE L1 -760 5386 4798 363 96 0 0 chr4 111453822 111453874 -90874473 + (TA)n Simple_repeat Simple_repeat 1 52 0 2219 106 13 7 chr4 111454958 111455260 -90873087 - AluSp SINE Alu -9 304 1 516 320 73 12 chr4 111457129 111457376 -90870971 - L2 LINE L2 -785 2529 2268 602 290 94 79 chr4 111457654 111457982 -90870365 - MER45C DNA AcHobo -810 143 439 12440 89 13 13 chr4 111458088 111460704 -90867643 - L1PA8 LINE L1 -112 6060 3451 464 216 239 11 chr4 111460831 111461007 -90867340 - MIR SINE MIR -26 236 21 2623 141 7 0 chr4 111461521 111461961 -90866386 + L1P LINE L1 1 443 -5703 270 0 0 0 chr4 111462291 111462321 -90866026 + (TA)n Simple_repeat Simple_repeat 2 31 0 28 0 0 0 chr4 111463884 111463912 -90864435 + AT_rich Low_complexity Low_complexity 1 28 0 6568 119 65 11 chr4 111466110 111467225 -90861122 - Tigger1 DNA MER2_type -1243 1175 1 699 311 118 19 chr4 111470433 111470848 -90857499 - L2 LINE L2 -627 2687 2232 1527 336 103 18 chr4 111470908 111472064 -90856283 + L2 LINE L2 2052 3310 -3 21 71 0 0 chr4 111473274 111473316 -90855031 + AT_rich Low_complexity Low_complexity 1 42 0 2234 111 3 0 chr4 111473318 111473615 -90854732 + AluSx SINE Alu 1 298 -14 193 268 116 36 chr4 111474353 111474465 -90853882 + L2 LINE L2 3175 3295 -18 1531 148 44 0 chr4 111474480 111474730 -90853617 - AluSx SINE Alu -23 289 29 2272 122 0 0 chr4 111474941 111475253 -90853094 + AluSx SINE Alu 1 312 0 340 249 32 54 chr4 111475266 111475451 -90852896 + L1MC5 LINE L1 7337 7517 -444 451 241 57 24 chr4 111475678 111475890 -90852457 + L1MC5 LINE L1 7701 7919 -42 1584 132 35 0 chr4 111476740 111476967 -90851380 + AluSq SINE Alu 1 235 -78 21 36 0 0 chr4 111477229 111477257 -90851090 + AT_rich Low_complexity Low_complexity 1 28 0 2357 98 3 0 chr4 111477333 111477630 -90850717 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr4 111478019 111478040 -90850307 + AT_rich Low_complexity Low_complexity 1 21 0 2443 63 20 0 chr4 111478073 111478376 -90849971 + AluSp SINE Alu 1 309 -4 10608 28 0 0 chr4 111479394 111480783 -90847564 - L1P2 LINE L1 -687 5467 4079 1083 73 0 0 chr4 111480780 111480931 -90847416 - L1P LINE L1 -1222 4924 4774 * 2918 50 0 0 chr4 111483993 111484351 -90843996 + L1PA4 LINE L1 5793 6150 -5 296 259 220 28 chr4 111485007 111485289 -90843058 + L1M2b LINE L1 1128 1463 -5746 3711 108 69 12 chr4 111485307 111485487 -90842860 + L1MA4A LINE L1 5611 5779 -524 270 81 0 0 chr4 111485487 111485524 -90842823 + (CA)n Simple_repeat Simple_repeat 2 38 0 3711 108 69 12 chr4 111485524 111485999 -90842348 + L1MA4A LINE L1 5779 6303 0 566 136 0 0 chr4 111486551 111486632 -90841715 + AluJ/FLAM SINE Alu 7 87 -225 1608 162 18 11 chr4 111486652 111486930 -90841417 + AluJb SINE Alu 30 309 -3 361 259 204 14 chr4 111487354 111487501 -90840846 + MIR3 SINE MIR 31 205 -3 321 40 60 0 chr4 111488142 111488192 -90840155 + L1M2 LINE L1 5705 5757 -534 36792 52 3 2 chr4 111488292 111493594 -90834753 + L1P1 LINE L1 476 5781 -374 517 281 50 25 chr4 111494959 111495119 -90833228 + MIR SINE MIR 12 175 -87 283 194 0 65 chr4 111495616 111495678 -90832669 + MIR SINE MIR 176 233 -29 2278 120 0 0 chr4 111495979 111496288 -90832059 - AluSx SINE Alu -3 309 1 393 325 101 42 chr4 111497386 111497623 -90830724 + L2 LINE L2 2249 2499 -815 242 116 23 0 chr4 111497624 111497667 -90830680 + CT-rich Low_complexity Low_complexity 1 44 0 2094 135 3 0 chr4 111497683 111497987 -90830360 - AluSx SINE Alu -7 305 1 23 54 0 0 chr4 111498239 111498276 -90830071 + AT_rich Low_complexity Low_complexity 1 37 0 496 243 158 26 chr4 111498343 111498495 -90829852 - MER5A DNA MER1_type -6 183 12 1535 110 16 4 chr4 111499086 111499340 -90829007 - L1MA5A LINE L1 -5 6292 6036 198 167 0 0 chr4 111499427 111499463 -90828884 + (TG)n Simple_repeat Simple_repeat 2 37 0 204 354 0 0 chr4 111499620 111499699 -90828648 - MIR SINE MIR -4 258 180 400 371 60 35 chr4 111500277 111500679 -90827668 + L2 LINE L2 2553 2964 -350 285 227 146 36 chr4 111500681 111500791 -90827556 + L2 LINE L2 3148 3269 -3 25 0 0 0 chr4 111501025 111501050 -90827297 + AT_rich Low_complexity Low_complexity 1 25 0 8982 222 56 44 chr4 111501707 111502355 -90825992 - L1 LINE L1 -3087 3761 3122 5423 77 23 4 chr4 111502355 111503094 -90825253 + L1PA8 LINE L1 5418 6170 -2 8982 222 56 44 chr4 111503094 111504245 -90824102 - L1 LINE L1 -3726 3122 1985 1849 135 10 55 chr4 111504245 111504557 -90823790 - AluSx SINE Alu -14 298 1 8982 222 56 44 chr4 111504557 111506300 -90822047 - L1 LINE L1 -4863 1985 178 1553 166 55 7 chr4 111506619 111506926 -90821421 - MER2 DNA MER2_type -23 322 1 206 212 221 18 chr4 111506986 111507099 -90821248 + MIR SINE MIR 127 262 0 28 29 0 0 chr4 111507605 111507640 -90820707 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr4 111507788 111507814 -90820533 + AT_rich Low_complexity Low_complexity 1 26 0 387 303 86 45 chr4 111508218 111508462 -90819885 + MIR SINE MIR 6 259 -3 944 217 35 88 chr4 111508536 111508909 -90819438 + L1ME3A LINE L1 5813 6165 -5 334 258 0 45 chr4 111508977 111509066 -90819281 - L2 LINE L2 0 3313 3229 1392 45 0 23 chr4 111509077 111509254 -90819093 + L1PA3 LINE L1 5983 6155 0 213 39 0 0 chr4 111509284 111509310 -90819037 + (A)n Simple_repeat Simple_repeat 1 26 0 1507 196 14 0 chr4 111509589 111509865 -90818482 + 7SLRNA srpRNA srpRNA 13 292 -28 332 297 138 96 chr4 111510152 111510789 -90817558 + L1M4 LINE L1 2 665 -5877 453 84 0 0 chr4 111512066 111512137 -90816210 + (TTTTA)n Simple_repeat Simple_repeat 1 71 0 6866 47 6 1 chr4 111512137 111513144 -90815203 - L1PA5 LINE L1 -24 6130 5119 10651 30 4 0 chr4 111513183 111515221 -90813126 - L1PA3 LINE L1 -2 6153 4110 991 253 113 48 chr4 111515330 111515867 -90812480 - MER114 LTR ERV 0 648 65 2020 134 7 3 chr4 111515867 111516165 -90812182 + AluSg SINE Alu 1 299 -11 991 253 113 48 chr4 111516165 111516235 -90812112 - MER114 LTR ERV -583 65 1 21 71 0 0 chr4 111516259 111516301 -90812046 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr4 111516372 111516401 -90811946 + AT_rich Low_complexity Low_complexity 1 29 0 3101 201 19 11 chr4 111516473 111517170 -90811177 - L1MB4 LINE L1 -3 6177 5476 324 264 0 0 chr4 111517171 111517262 -90811085 + T-rich Low_complexity Low_complexity 1 94 -12 1641 158 0 0 chr4 111517262 111517502 -90810845 - AluJb SINE Alu -72 240 1 324 264 0 0 chr4 111517502 111517516 -90810831 + T-rich Low_complexity Low_complexity 93 106 0 296 167 0 0 chr4 111517527 111517583 -90810764 - L1MB4 LINE L1 -693 5481 5426 454 302 52 86 chr4 111517684 111518147 -90810200 - L2 LINE L2 -642 2672 2226 2283 166 32 7 chr4 111518202 111518612 -90809735 - MSTB LTR MaLR -4 422 3 1098 156 86 4 chr4 111518923 111519180 -90809167 - MER45B DNA AcHobo -7 1033 756 22 0 0 0 chr4 111521173 111521195 -90807152 + AT_rich Low_complexity Low_complexity 1 22 0 651 217 28 28 chr4 111521297 111521440 -90806907 - MER5A DNA MER1_type 0 189 47 1691 223 97 62 chr4 111521440 111522040 -90806307 + MLT1E2 LTR MaLR 1 623 -3 239 250 0 0 chr4 111522044 111522092 -90806255 - MER5A DNA MER1_type -141 48 1 198 349 0 0 chr4 111522206 111522269 -90806078 + MIR SINE MIR 184 246 -16 703 304 58 5 chr4 111522312 111522519 -90805828 - MIR SINE MIR -34 228 11 347 107 0 0 chr4 111522630 111522686 -90805661 - AluSg SINE Alu -4 297 242 773 112 53 22 chr4 111523084 111523247 -90805100 + L1MA4A LINE L1 5683 5848 -337 1886 114 0 4 chr4 111523247 111523502 -90804845 - AluSg SINE Alu -56 254 1 189 377 14 0 chr4 111523552 111523621 -90804726 - L2 LINE L2 -2 3311 3242 579 146 111 23 chr4 111523790 111523961 -90804386 + MER53 DNA DNA 4 189 0 437 184 139 51 chr4 111525144 111525302 -90803045 - LTR40b LTR ERVL 0 462 304 254 143 0 36 chr4 111525453 111525509 -90802838 + L1ME LINE L1 5772 5825 -296 2016 100 42 14 chr4 111525655 111525944 -90802403 + AluSq SINE Alu 1 297 -16 487 215 0 8 chr4 111526050 111526171 -90802176 + MLT1B LTR MaLR 56 175 -215 1938 110 37 4 chr4 111526483 111526783 -90801564 - AluSq SINE Alu 0 309 1 2408 153 69 6 chr4 111527068 111527559 -90800788 - L1MA4A LINE L1 -57 6246 5725 539 193 9 0 chr4 111527668 111527777 -90800570 - L1M4c LINE L1 -4783 1601 1492 967 221 76 3 chr4 111527783 111528086 -90800261 - L1M4c LINE L1 -4978 1406 1082 28301 111 12 74 chr4 111528094 111534641 -90793706 - L1PA7 LINE L1 -12 6142 12 348 236 114 8 chr4 111534656 111534779 -90793568 - L1M4c LINE L1 -5181 1099 964 2198 164 18 111 chr4 111534793 111535694 -90792653 - L1MB3 LINE L1 0 6183 5452 2026 152 3 0 chr4 111535694 111535991 -90792356 - AluSx SINE Alu -14 298 1 2198 164 18 111 chr4 111535991 111536132 -90792215 - L1MB3 LINE L1 -731 5452 5300 371 175 47 117 chr4 111536139 111536310 -90792037 - L1M4c LINE L1 -5447 937 779 388 179 13 0 chr4 111537842 111537929 -90790418 - MLT2B3 LTR ERVL -205 310 223 226 180 160 0 chr4 111538109 111538159 -90790188 - MLT1K LTR MaLR -1 587 530 265 289 94 12 chr4 111538521 111538742 -90789605 + L2 LINE L2 2232 2482 -832 513 311 132 5 chr4 111538770 111538982 -90789365 - MIR SINE MIR 0 262 24 217 0 0 0 chr4 111538988 111539012 -90789335 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 2016 108 7 17 chr4 111539012 111539300 -90789047 - AluSx SINE Alu -1 308 1 1839 162 7 10 chr4 111539554 111539850 -90788497 - AluJb SINE Alu -17 295 1 210 37 0 0 chr4 111539854 111539881 -90788466 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 670 241 132 42 chr4 111540252 111540725 -90787622 + MLT1E LTR MaLR 1 593 0 21 0 0 0 chr4 111542408 111542429 -90785918 + AT_rich Low_complexity Low_complexity 1 21 0 5197 76 138 1 chr4 111543582 111544309 -90784038 + LTR12 LTR ERV1 1 826 0 23 0 0 0 chr4 111544861 111544884 -90783463 + AT_rich Low_complexity Low_complexity 1 23 0 187 250 36 36 chr4 111545317 111545373 -90782974 - L2 LINE L2 -86 3227 3172 240 312 0 0 chr4 111546447 111546524 -90781823 + L1ME LINE L1 5509 5585 -536 1159 266 94 27 chr4 111546567 111547205 -90781142 + L2 LINE L2 2633 3309 -4 278 224 131 37 chr4 111547853 111547960 -90780387 + MER5A DNA MER1_type 50 166 -23 277 298 53 18 chr4 111547867 111547981 -90780366 - MER5A DNA MER1_type -58 131 14 * 23 68 0 0 chr4 111548663 111548707 -90779640 + AT_rich Low_complexity Low_complexity 1 44 0 1385 151 42 67 chr4 111548762 111549046 -90779301 - MSTB LTR MaLR 0 426 150 2139 148 8 36 chr4 111549046 111549391 -90778956 + THE1C LTR MaLR 1 335 -40 2417 69 10 3 chr4 111549391 111549697 -90778650 - AluY SINE Alu -1 310 3 2139 148 8 36 chr4 111549697 111549737 -90778610 + THE1C LTR MaLR 335 375 0 10265 112 35 6 chr4 111549744 111551263 -90777084 + THE1C-int LTR MaLR 18 1580 0 1955 173 30 16 chr4 111551263 111551633 -90776714 + THE1C LTR MaLR 1 375 0 361 93 0 19 chr4 111551656 111551710 -90776637 - MSTB LTR MaLR -373 53 1 309 265 20 65 chr4 111552084 111552306 -90776041 + MIR SINE MIR 20 256 -6 250 315 0 0 chr4 111552329 111552383 -90775964 + L2 LINE L2 3242 3295 -18 21 36 0 0 chr4 111553823 111553851 -90774496 + AT_rich Low_complexity Low_complexity 1 28 0 7688 22 0 0 chr4 111554476 111555858 -90772489 - L1PA3 LINE L1 -3 6152 4771 28 71 0 0 chr4 111556094 111556150 -90772197 + AT_rich Low_complexity Low_complexity 1 56 0 399 21 0 0 chr4 111557444 111557492 -90770855 + (TC)n Simple_repeat Simple_repeat 1 48 0 225 0 0 0 chr4 111557945 111557970 -90770377 + (TG)n Simple_repeat Simple_repeat 1 25 0 223 214 0 0 chr4 111559031 111559073 -90769274 + MIR3 SINE MIR 119 160 -48 1712 129 79 148 chr4 111559168 111559626 -90768721 + MSTB LTR MaLR 1 426 0 22 0 0 0 chr4 111559769 111559791 -90768556 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr4 111561289 111561333 -90767014 + AT_rich Low_complexity Low_complexity 1 44 0 971 184 113 15 chr4 111561703 111562002 -90766345 - MER33 DNA MER1_type -6 318 1 2301 86 0 0 chr4 111562078 111562368 -90765979 - AluSc SINE Alu -19 290 1 1211 285 82 27 chr4 111562563 111562813 -90765534 - L1MC4a LINE L1 -1893 5915 5680 1918 152 0 7 chr4 111562813 111563103 -90765244 - AluSx SINE Alu -24 288 1 1211 285 82 27 chr4 111563103 111563474 -90764873 - L1MC4a LINE L1 -2128 5680 5260 252 264 73 59 chr4 111563800 111564020 -90764327 - L1MC4a LINE L1 -1307 4839 4617 392 296 121 39 chr4 111564072 111564427 -90763920 - L1MC4a LINE L1 -1617 4529 4146 3633 129 46 11 chr4 111564659 111565270 -90763077 - L1PA15 LINE L1 -25 6140 5509 217 394 101 0 chr4 111565287 111565485 -90762862 - L2 LINE L2 -212 3060 2843 2363 98 0 0 chr4 111565865 111566161 -90762186 + AluSx SINE Alu 5 300 -12 225 0 0 0 chr4 111566593 111566618 -90761729 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 6549 127 43 32 chr4 111570737 111571874 -90756473 - Tigger1 DNA MER2_type 0 2418 1269 4271 230 94 23 chr4 111572402 111572795 -90755552 - L1MB7 LINE L1 -19 6165 5801 2035 137 11 0 chr4 111572795 111573080 -90755267 - AluSx SINE Alu -24 288 1 4271 230 94 23 chr4 111573080 111574152 -90754195 - L1MB7 LINE L1 -383 5801 4806 730 187 8 15 chr4 111574152 111574286 -90754061 - FLAM_C SINE Alu 0 133 1 4271 230 94 23 chr4 111574286 111574452 -90753895 - L1MB7 LINE L1 -1378 4806 4653 1860 130 46 7 chr4 111574452 111574737 -90753610 - AluSx SINE Alu -16 296 1 4271 230 94 23 chr4 111574737 111575617 -90752730 - L1MB7 LINE L1 -1531 4653 3494 3515 182 44 3 chr4 111575622 111576321 -90752026 - L1MC1 LINE L1 0 6831 6104 4726 252 159 24 chr4 111576323 111578175 -90750172 - L1MC1 LINE L1 -917 5727 4126 1744 178 0 7 chr4 111578175 111578468 -90749879 - AluJo SINE Alu -21 291 1 4726 252 159 24 chr4 111578468 111580905 -90747442 - L1MC1 LINE L1 -2518 4126 1035 862 166 0 0 chr4 111580907 111581046 -90747301 + FLAM_C SINE Alu 1 139 -4 3949 213 60 38 chr4 111581046 111582055 -90746292 - L1MC1 LINE L1 -5506 1036 5 361 254 69 15 chr4 111582056 111582186 -90746161 - L1MC5 LINE L1 -782 7179 7043 373 271 117 48 chr4 111582217 111582508 -90745839 - L1MC4 LINE L1 -1084 6809 6414 527 218 84 67 chr4 111582633 111582858 -90745489 + L1ME3A LINE L1 5720 5948 -222 767 171 0 0 chr4 111582869 111582986 -90745361 + FLAM_A SINE Alu 10 126 -16 461 219 151 39 chr4 111582999 111583204 -90745143 + L1ME3A LINE L1 5934 6161 -9 279 271 0 0 chr4 111584123 111584182 -90744165 - Tigger5 DNA MER2_type -1 2322 2264 221 311 0 40 chr4 111586244 111586318 -90742029 - L2 LINE L2 -11 3261 3191 2277 105 3 0 chr4 111586354 111586650 -90741697 + AluSp SINE Alu 2 298 -15 580 240 167 0 chr4 111586657 111586807 -90741540 + FRAM SINE Alu 1 172 -4 706 223 103 16 chr4 111588917 111589101 -90739246 + MER3 DNA MER1_type 9 208 -1 4546 255 115 17 chr4 111589431 111591569 -90736778 + L1ME1 LINE L1 28 2383 -4013 2851 214 90 55 chr4 111591612 111592445 -90735902 + L1ME1 LINE L1 3951 4832 -1383 1915 138 3 7 chr4 111592445 111592741 -90735606 + AluSx SINE Alu 3 297 -15 2851 214 90 55 chr4 111592741 111592989 -90735358 + L1ME1 LINE L1 4832 5070 -1145 468 271 177 0 chr4 111592982 111593163 -90735184 + L1ME1 LINE L1 5977 6189 -46 * 2699 90 11 0 chr4 111593535 111593889 -90734458 - THE1B LTR MaLR -6 358 1 5353 202 38 31 chr4 111693932 111695333 -90633014 - L1M3 LINE L1 -656 5524 4104 2120 116 3 17 chr4 111695333 111695635 -90632712 + AluSg SINE Alu 3 300 -10 5353 202 38 31 chr4 111695635 111695781 -90632566 - L1M3 LINE L1 -2076 4104 3960 778 168 0 0 chr4 111695792 111695929 -90632418 - L1PB3 LINE L1 -1 6869 6733 13029 191 50 24 chr4 111695932 111696056 -90632291 - L1PB3 LINE L1 -280 6590 6471 333 68 0 0 chr4 111696056 111696100 -90632247 + (CA)n Simple_repeat Simple_repeat 2 45 0 13029 191 50 24 chr4 111696100 111698163 -90630184 - L1PB3 LINE L1 -399 6471 4463 2358 29 0 0 chr4 111698163 111698439 -90629908 - L1PA3 LINE L1 0 6155 5880 13029 191 50 24 chr4 111698439 111698611 -90629736 - L1PB3 LINE L1 -2407 4463 4297 198 71 0 0 chr4 111698611 111698639 -90629708 + (TTG)n Simple_repeat Simple_repeat 1 28 0 13029 191 50 24 chr4 111698639 111700098 -90628249 - L1PB3 LINE L1 -2573 4297 2671 8203 190 20 7 chr4 111700106 111701762 -90626585 - L1P LINE L1 -1794 4352 2675 618 156 0 0 chr4 111701762 111701889 -90626458 - AluSg/x SINE Alu 0 316 190 1126 113 0 0 chr4 111701889 111702040 -90626307 - AluSq SINE Alu -160 153 3 1663 263 69 16 chr4 111704422 111705102 -90623245 + L1M4 LINE L1 4490 5205 -941 21 0 0 0 chr4 111705564 111705585 -90622762 + AT_rich Low_complexity Low_complexity 1 21 0 424 278 43 9 chr4 111705706 111705821 -90622526 - MIR SINE MIR -93 169 51 880 101 17 0 chr4 111705870 111705989 -90622358 - AluSg/x SINE Alu -18 291 171 487 331 25 0 chr4 111706289 111706446 -90621901 + L2 LINE L2 2045 2205 -1109 1691 55 0 0 chr4 111706446 111706666 -90621681 - L1P LINE L1 -869 5277 5058 23 0 0 0 chr4 111708366 111708389 -90619958 + AT_rich Low_complexity Low_complexity 1 23 0 376 239 7 163 chr4 111708764 111709070 -90619277 - MER112 DNA MER1_type -1 259 2 206 338 26 0 chr4 111709497 111709574 -90618773 + L2 LINE L2 2551 2629 -685 5064 124 13 66 chr4 111709604 111709888 -90618459 - L1MA2 LINE L1 0 6304 6007 1957 138 10 3 chr4 111709888 111710179 -90618168 - AluSx SINE Alu -19 293 1 5064 124 13 66 chr4 111710179 111710875 -90617472 - L1MA2 LINE L1 -297 6007 5376 2108 75 61 31 chr4 111711734 111712028 -90616319 + AluY SINE Alu 1 303 -8 10646 31 2 0 chr4 111712128 111713412 -90614935 + L1P LINE L1 1425 2710 -3436 3687 188 5 4 chr4 111713518 111714326 -90614021 - L1M1 LINE L1 -743 5403 4621 428 321 80 44 chr4 111714327 111714692 -90613655 + L2 LINE L2 2623 3001 -271 336 102 0 0 chr4 111714692 111714741 -90613606 + (TG)n Simple_repeat Simple_repeat 2 50 0 428 321 80 44 chr4 111714741 111714846 -90613501 + L2 LINE L2 3001 3101 -171 4359 158 17 5 chr4 111714960 111715717 -90612630 + HSMAR2 DNA Mariner 350 1115 -187 360 0 0 0 chr4 111715921 111715961 -90612386 + (TTA)n Simple_repeat Simple_repeat 3 42 0 3296 40 2 2 chr4 111715961 111716361 -90611986 - L1PA4 LINE L1 -18 6137 5738 1073 163 5 0 chr4 111716373 111716557 -90611790 + HSMAR2 DNA Mariner 1115 1299 -3 352 238 119 7 chr4 111717064 111717207 -90611140 - MIR SINE MIR 0 262 104 598 278 106 20 chr4 111717248 111717446 -90610901 - MIR SINE MIR -13 249 35 267 347 21 35 chr4 111717659 111717803 -90610544 + MIR SINE MIR 1 142 -120 372 316 124 10 chr4 111717842 111718035 -90610312 - MIR SINE MIR -3 259 45 1682 95 26 4 chr4 111718057 111718288 -90610059 + AluSq SINE Alu 1 236 -77 186 264 160 9 chr4 111718440 111718546 -90609801 + L2 LINE L2 2667 2788 -526 707 285 67 65 chr4 111718644 111719089 -90609258 - MLT1J1 LTR MaLR 0 446 1 998 248 176 68 chr4 111719100 111719584 -90608763 - L2 LINE L2 -953 2361 1826 21 0 0 0 chr4 111719644 111719665 -90608682 + AT_rich Low_complexity Low_complexity 1 21 0 323 299 83 33 chr4 111720270 111720535 -90607812 + L1M4 LINE L1 4033 4306 -1840 2321 125 11 19 chr4 111720662 111721029 -90607318 + THE1B LTR MaLR 1 364 0 371 198 108 108 chr4 111721394 111721551 -90606796 - MLT1J2 LTR MaLR -12 438 282 350 247 0 21 chr4 111721637 111721730 -90606617 - MLT1J2 LTR MaLR -323 127 37 204 253 27 53 chr4 111721948 111722023 -90606324 + MIR SINE MIR 184 256 -6 180 0 0 0 chr4 111722554 111722574 -90605773 + (T)n Simple_repeat Simple_repeat 1 20 0 1823 169 61 30 chr4 111722784 111723146 -90605201 + L1MC1 LINE L1 5944 6316 -17 7050 68 6 19 chr4 111723485 111729507 -90598840 - L1PA5 LINE L1 0 6154 1 224 274 221 9 chr4 111729696 111729809 -90598538 - L3b LINE CR1 -171 1412 1276 350 329 89 0 chr4 111730148 111730294 -90598053 + MIR SINE MIR 75 233 -29 186 43 0 0 chr4 111730503 111730526 -90597821 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 726 167 24 0 chr4 111732463 111732589 -90595758 - FLAM_A SINE Alu -1 132 4 21 36 0 0 chr4 111733136 111733164 -90595183 + AT_rich Low_complexity Low_complexity 1 28 0 607 254 16 8 chr4 111733583 111733738 -90594609 - MIR SINE MIR -61 147 5 1357 128 92 0 chr4 111734521 111734739 -90593608 - AluJb SINE Alu -14 298 61 415 222 108 29 chr4 111734795 111734988 -90593359 - MLT1L LTR MaLR -341 274 1 205 235 20 0 chr4 111735119 111735170 -90593177 + (TA)n Simple_repeat Simple_repeat 2 53 0 222 293 50 40 chr4 111736098 111736197 -90592150 + MIR3 SINE MIR 95 194 -14 300 282 0 21 chr4 111736222 111736313 -90592034 - MER5A DNA MER1_type -16 165 76 41 78 0 0 chr4 111736445 111736535 -90591812 + AT_rich Low_complexity Low_complexity 1 90 0 2304 118 90 20 chr4 111736708 111737108 -90591239 - MSTA LTR MaLR 0 428 1 224 286 16 16 chr4 111737144 111737207 -90591140 + MER5A DNA MER1_type 102 164 -25 336 328 124 35 chr4 111737273 111737313 -90591034 - LTR33 LTR ERVL -6 515 480 1400 202 35 38 chr4 111737313 111737679 -90590668 - MLT1A1 LTR MaLR 0 365 1 336 328 124 35 chr4 111737679 111737986 -90590361 - LTR33 LTR ERVL -41 480 137 180 0 0 0 chr4 111739879 111739899 -90588448 + (A)n Simple_repeat Simple_repeat 1 20 0 243 218 13 0 chr4 111740675 111740753 -90587594 + L1 LINE L1 3414 3492 -2654 393 282 160 76 chr4 111740828 111741088 -90587259 + L1MC/D LINE L1 3564 3870 -2276 2385 44 0 0 chr4 111741088 111741360 -90586987 + AluY SINE Alu 21 292 -19 393 282 160 76 chr4 111741360 111741492 -90586855 + L1MC/D LINE L1 3870 3989 -2157 434 283 59 0 chr4 111741499 111741686 -90586661 + L1MC/D LINE L1 4511 4708 -1438 200 118 29 0 chr4 111742066 111742100 -90586247 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 1762 167 15 0 chr4 111742101 111742370 -90585977 - AluJo SINE Alu -34 278 6 217 323 76 38 chr4 111742402 111742560 -90585787 + L3b LINE CR1 1345 1508 -75 225 0 0 0 chr4 111743421 111743446 -90584901 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 42592 50 4 1 chr4 111743446 111749551 -90578796 - L1PA4 LINE L1 -16 6139 11 306 207 0 0 chr4 111749659 111749717 -90578630 - L2 LINE L2 -2 3311 3254 248 336 28 9 chr4 111749799 111749906 -90578441 - L3b LINE CR1 -256 1327 1219 183 139 0 0 chr4 111749938 111749974 -90578373 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 505 242 97 16 chr4 111750014 111750138 -90578209 - L2 LINE L2 -18 3295 3162 236 250 0 0 chr4 111750741 111750805 -90577542 + L1MC/D LINE L1 4729 4792 -1354 30104 117 18 64 chr4 111750820 111753227 -90575120 + L1PA7 LINE L1 12 2527 -3627 2122 116 23 7 chr4 111753227 111753529 -90574818 + AluSc SINE Alu 3 309 0 30104 117 18 64 chr4 111753529 111757557 -90570790 + L1PA7 LINE L1 2527 6146 -8 321 265 94 39 chr4 111758145 111758326 -90570021 + L1MC/D LINE L1 5437 5630 -540 1288 182 95 4 chr4 111758407 111758649 -90569698 + Tigger7 DNA MER2_type 4 267 -466 504 200 0 11 chr4 111758648 111758738 -90569609 + Tigger7 DNA MER2_type 2393 2481 -6 * 727 358 58 0 chr4 111758955 111759265 -90569082 + MLT1I LTR MaLR 74 401 -8 550 229 61 108 chr4 111759272 111759503 -90568844 + MIR SINE MIR 38 257 -5 815 170 0 7 chr4 111759517 111759658 -90568689 + FLAM_C SINE Alu 1 140 -3 1752 145 57 7 chr4 111759807 111760089 -90568258 + AluJb SINE Alu 1 296 -16 2133 133 0 3 chr4 111760786 111761088 -90567259 - AluSx SINE Alu -11 301 1 1892 238 130 24 chr4 111761339 111762118 -90566229 + L1M4 LINE L1 4389 5249 -897 441 207 41 8 chr4 111762126 111762247 -90566100 + L1ME2 LINE L1 6038 6162 -2 2122 90 55 10 chr4 111762723 111763013 -90565334 + AluSq SINE Alu 1 303 -10 581 144 25 3 chr4 111763286 111763544 -90564803 - AluJb SINE Alu 0 331 2 2023 180 42 10 chr4 111765888 111766272 -90562075 + MSTD LTR MaLR 1 396 0 418 337 92 15 chr4 111766772 111766968 -90561379 + MIR SINE MIR 14 224 -38 1786 122 16 55 chr4 111767818 111768129 -90560218 - AluSx SINE Alu -13 299 1 2171 101 3 35 chr4 111768332 111768648 -90559699 - AluSg SINE Alu -4 306 1 290 167 17 0 chr4 111769963 111770023 -90558324 + T-rich Low_complexity Low_complexity 5 65 0 1879 154 3 20 chr4 111770034 111770326 -90558021 - AluSx SINE Alu -23 289 3 487 210 0 0 chr4 111771015 111771094 -90557253 + LTR40a LTR ERVL 3 81 -438 726 233 5 56 chr4 111771094 111771309 -90557038 + MER58C DNA MER1_type 1 204 -11 845 187 45 28 chr4 111771309 111771613 -90556734 + LTR40b LTR ERVL 68 459 -3 2281 177 134 14 chr4 111772101 111772599 -90555748 - MER74A LTR ERVL 0 558 1 6229 144 12 153 chr4 111772962 111773491 -90554856 + MER52A LTR ERV1 454 1056 -699 198 0 0 0 chr4 111773491 111773513 -90554834 + (AGATG)n Simple_repeat Simple_repeat 5 26 0 6229 144 12 153 chr4 111773513 111773638 -90554709 + MER52A LTR ERV1 1056 1197 -558 198 0 0 0 chr4 111773638 111773660 -90554687 + (AGATG)n Simple_repeat Simple_repeat 5 26 0 6229 144 12 153 chr4 111773660 111774519 -90553828 + MER52A LTR ERV1 1197 1755 0 675 241 153 0 chr4 111774544 111774760 -90553587 - MIR SINE MIR -11 251 3 357 302 44 57 chr4 111775505 111775664 -90552683 + MIR SINE MIR 56 212 -50 2339 75 7 0 chr4 111776204 111776498 -90551849 - AluSp SINE Alu -16 297 2 420 245 150 35 chr4 111776903 111777103 -90551244 - MIR SINE MIR -6 256 34 303 319 15 15 chr4 111777467 111777602 -90550745 + L1ME4a LINE L1 4878 5012 -1134 1360 134 0 0 chr4 111777718 111777920 -90550427 - AluSq SINE Alu -3 310 109 372 250 79 0 chr4 111777997 111778149 -90550198 + L1ME4a LINE L1 5254 5417 -2391 406 284 108 14 chr4 111778271 111778419 -90549928 + MIR3 SINE MIR 32 193 -15 331 286 0 0 chr4 111778692 111778797 -90549550 - HAL1 LINE L1 -169 2338 2234 2514 281 97 60 chr4 111778950 111779937 -90548410 - HAL1 LINE L1 -538 1969 886 2784 86 6 0 chr4 111779937 111780299 -90548048 + THE1B LTR MaLR 1 364 0 2514 281 97 60 chr4 111780299 111781060 -90547287 - HAL1 LINE L1 -1621 886 155 27 0 0 0 chr4 111781767 111781794 -90546553 + AT_rich Low_complexity Low_complexity 1 27 0 233 200 22 0 chr4 111782881 111782926 -90545421 + L1ME4a LINE L1 5558 5603 -518 336 274 137 25 chr4 111783037 111783234 -90545113 + L1ME4a LINE L1 5903 6121 0 189 107 0 0 chr4 111783510 111783538 -90544809 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2106 136 0 0 chr4 111784252 111784535 -90543812 + AluSx SINE Alu 1 286 -26 408 91 0 0 chr4 111784535 111784601 -90543746 + (CCAA)n Simple_repeat Simple_repeat 2 67 0 2106 136 0 0 chr4 111784601 111784618 -90543729 + AluSx SINE Alu 285 301 -11 392 231 55 122 chr4 111784704 111784959 -90543388 - L2 LINE L2 -230 3042 2805 235 279 25 13 chr4 111784999 111785078 -90543269 - L2 LINE L2 -643 2671 2592 195 42 0 0 chr4 111786834 111786858 -90541489 + (CATA)n Simple_repeat Simple_repeat 1 24 0 200 216 0 0 chr4 111787706 111787743 -90540604 + T-rich Low_complexity Low_complexity 4 40 0 27 49 0 0 chr4 111787788 111787829 -90540518 + AT_rich Low_complexity Low_complexity 1 41 0 290 291 8 17 chr4 111787947 111788064 -90540283 - L1ME LINE L1 -254 5867 5752 280 272 39 10 chr4 111788330 111788433 -90539914 - L1MC4 LINE L1 -17 8025 7920 197 301 11 97 chr4 111790160 111790253 -90538094 - L2 LINE L2 -31 3282 3198 326 344 84 44 chr4 111791058 111791319 -90537028 + L2 LINE L2 2720 2987 -285 398 296 26 74 chr4 111792676 111792906 -90535441 - MIR SINE MIR -24 238 20 525 294 28 0 chr4 111794429 111794572 -90533775 + MLT1G1 LTR MaLR 438 584 -11 2215 102 16 0 chr4 111795046 111795351 -90532996 - AluSx SINE Alu -2 310 1 552 328 193 17 chr4 111795661 111796018 -90532329 - L2 LINE L2 -1 3312 2893 1811 135 90 15 chr4 111796054 111796388 -90531959 - MER46B DNA MER2_type -2 234 1 555 310 97 9 chr4 111796437 111796653 -90531694 - MIR SINE MIR -16 246 12 742 190 7 0 chr4 111797182 111797324 -90531023 + FLAM_C SINE Alu 1 143 0 323 342 99 21 chr4 111797567 111797810 -90530537 + L2 LINE L2 2186 2447 -867 308 373 30 42 chr4 111797898 111797989 -90530358 + L2 LINE L2 2695 2786 -486 1601 36 0 0 chr4 111797989 111798184 -90530163 - L1PA3 LINE L1 -2 6153 5959 308 373 30 42 chr4 111798184 111798358 -90529989 + L2 LINE L2 2786 2966 -306 453 281 33 7 chr4 111798451 111798604 -90529743 - MER103 DNA DNA 0 166 10 21 0 0 0 chr4 111799668 111799689 -90528658 + AT_rich Low_complexity Low_complexity 1 21 0 982 246 149 21 chr4 111799977 111800306 -90528041 - L2 LINE L2 -5 3308 2938 4194 175 21 4 chr4 111800306 111801027 -90527320 - MER44D DNA MER2_type 0 605 1 323 340 11 0 chr4 111801047 111801141 -90527206 - L2 LINE L2 -465 2849 2755 896 289 31 4 chr4 111801163 111801391 -90526956 - L2 LINE L2 -668 2646 2413 909 264 163 0 chr4 111801407 111801684 -90526663 - L2 LINE L2 -1163 2151 1830 2315 260 49 45 chr4 111801684 111802574 -90525773 + L1MC4 LINE L1 7117 8010 -32 472 267 317 10 chr4 111802608 111803012 -90525335 - L2 LINE L2 -1480 1834 1307 203 397 0 0 chr4 111803082 111803155 -90525192 - MIR3 SINE MIR -23 185 113 234 330 32 48 chr4 111803245 111803433 -90524914 - MIR SINE MIR 0 262 78 534 163 144 65 chr4 111804534 111804683 -90523664 - MER20B DNA MER1_type -6 777 604 2397 96 30 8 chr4 111804683 111805048 -90523299 + L1PA11 LINE L1 5800 6172 -2 534 163 144 65 chr4 111805048 111805113 -90523234 - MER20B DNA MER1_type -179 604 546 24 32 0 0 chr4 111805416 111805447 -90522900 + AT_rich Low_complexity Low_complexity 1 31 0 591 255 91 6 chr4 111805840 111806106 -90522241 - L1ME3 LINE L1 -202 5968 5681 340 257 143 0 chr4 111806557 111806662 -90521685 + MIR SINE MIR 70 189 -73 418 246 156 6 chr4 111807291 111807470 -90520877 + HAL1b LINE L1 358 563 -785 200 193 261 57 chr4 111807523 111807611 -90520736 - MIR SINE MIR -31 231 126 304 302 29 29 chr4 111807657 111807796 -90520551 - MIR SINE MIR -110 152 14 3063 174 36 70 chr4 111808297 111808971 -90519376 - MER82 DNA MER2_type 0 653 3 2398 102 22 19 chr4 111809245 111809608 -90518739 + THE1B LTR MaLR 1 364 0 824 136 3 3 chr4 111809681 111809809 -90518538 - L1PA15 LINE L1 -144 6021 5895 14201 130 37 14 chr4 111809809 111811695 -90516652 + Tigger1 DNA MER2_type 31 1983 -435 1544 112 31 5 chr4 111811695 111811919 -90516428 + AluSg/x SINE Alu 81 310 0 14201 130 37 14 chr4 111811919 111812363 -90515984 + Tigger1 DNA MER2_type 1983 2415 -3 417 39 0 0 chr4 111812584 111812635 -90515712 + (CA)n Simple_repeat Simple_repeat 2 52 0 385 240 31 0 chr4 111812774 111812870 -90515477 - MER69 DNA AcHobo -885 341 243 356 285 41 24 chr4 111812875 111812998 -90515349 - Charlie8 DNA MER1_type -2291 126 2 2394 115 5 40 chr4 111813273 111813648 -90514699 + THE1B LTR MaLR 3 364 0 257 243 14 40 chr4 111814005 111814079 -90514268 - Charlie8 DNA MER1_type -2195 222 151 300 295 0 36 chr4 111814337 111814449 -90513898 + L1M4 LINE L1 2932 3039 -3107 2124 99 7 7 chr4 111814516 111814787 -90513560 + AluSx SINE Alu 11 284 -28 618 14 0 0 chr4 111814787 111814858 -90513489 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 2124 99 7 7 chr4 111814858 111814888 -90513459 + AluSx SINE Alu 283 312 0 2160 156 19 27 chr4 111815086 111815497 -90512850 - L1MC1 LINE L1 -7 6326 5919 384 163 44 59 chr4 111816183 111816318 -90512029 - L1MC5 LINE L1 -185 7776 7644 303 211 14 14 chr4 111816935 111817006 -90511341 - L3 LINE CR1 -19 1558 1488 2094 233 60 2 chr4 111817368 111817866 -90510481 + MER119 DNA MER1_type 57 583 0 582 327 126 7 chr4 111817900 111818169 -90510178 - L2 LINE L2 0 3313 3013 2673 36 0 0 chr4 111818265 111818570 -90509777 - AluY SINE Alu -6 305 1 1486 164 75 21 chr4 111819024 111819305 -90509042 - AluJo SINE Alu -16 296 1 432 272 47 65 chr4 111819782 111819870 -90508477 + MIR3 SINE MIR 31 116 -92 1658 251 66 33 chr4 111819870 111820444 -90507903 + MLT1E LTR MaLR 1 593 0 432 272 47 65 chr4 111820444 111820524 -90507823 + MIR3 SINE MIR 116 196 -12 487 268 37 16 chr4 111821017 111821207 -90507140 + L1MEc LINE L1 2023 2216 -4180 313 318 179 3 chr4 111821251 111821420 -90506927 + MIR3 SINE MIR 1 202 -6 392 295 29 29 chr4 111822151 111822290 -90506057 + MER5A DNA MER1_type 12 150 -39 237 331 66 13 chr4 111822178 111822329 -90506018 - MER5A DNA MER1_type -26 163 5 * 659 278 51 6 chr4 111822324 111822500 -90505847 + MER5A DNA MER1_type 6 189 0 295 97 97 65 chr4 111822508 111822570 -90505777 - Charlie7 DNA MER1_type 0 2612 2549 2081 210 45 4 chr4 111822636 111823133 -90505214 - L1M4 LINE L1 -472 5702 5157 1850 137 0 34 chr4 111823133 111823454 -90504893 - AluSx SINE Alu -2 310 1 2081 210 45 4 chr4 111823454 111823663 -90504684 - L1M4 LINE L1 -1017 5157 4958 1698 222 64 99 chr4 111823663 111824439 -90503908 - L1M4 LINE L1 -1734 4412 3664 * 3861 218 130 38 chr4 111824434 111825117 -90503230 + L1MC4 LINE L1 6383 7002 -1040 1862 178 47 23 chr4 111825117 111825504 -90502843 + MSTD LTR MaLR 1 396 0 3861 218 130 38 chr4 111825504 111826250 -90502097 + L1MC4 LINE L1 7002 8042 0 1350 143 15 0 chr4 111826885 111827088 -90501259 + AluSg/x SINE Alu 85 290 -20 1805 151 22 0 chr4 111827166 111827466 -90500881 - AluJo SINE Alu 0 306 1 24 67 0 0 chr4 111827940 111827985 -90500362 + AT_rich Low_complexity Low_complexity 1 45 0 1512 169 10 36 chr4 111828136 111828437 -90499910 + AluJo SINE Alu 11 303 -9 275 310 171 0 chr4 111828568 111828697 -90499650 - MIR SINE MIR -35 227 77 22 0 0 0 chr4 111828950 111828972 -90499375 + AT_rich Low_complexity Low_complexity 1 22 0 2557 186 57 39 chr4 111830293 111830911 -90497436 + L1MC4 LINE L1 7414 8042 0 36 0 0 0 chr4 111831794 111831830 -90496517 + AT_rich Low_complexity Low_complexity 1 36 0 669 323 58 9 chr4 111831837 111832063 -90496284 - MIR SINE MIR -13 249 13 203 372 58 0 chr4 111832769 111832855 -90495492 - MIR3 SINE MIR -15 193 103 31123 110 13 54 chr4 111832890 111839309 -90489038 + L1PA7 LINE L1 12 6154 0 1606 191 7 16 chr4 111839623 111839927 -90488420 + AluJo SINE Alu 1 301 -11 193 209 0 0 chr4 111840087 111840138 -90488209 - L2 LINE L2 -304 2968 2918 387 60 0 0 chr4 111840407 111840457 -90487890 + (TG)n Simple_repeat Simple_repeat 2 51 0 22 99 0 0 chr4 111840461 111840532 -90487815 + AT_rich Low_complexity Low_complexity 1 71 0 185 286 20 0 chr4 111841189 111841238 -90487109 + MIR3 SINE MIR 138 187 -21 2177 55 28 10 chr4 111841352 111841643 -90486704 + AluY SINE Alu 1 296 -15 2073 144 9 66 chr4 111842290 111842714 -90485633 + MER57A LTR ERV1 3 402 -1 225 0 0 0 chr4 111842769 111842794 -90485553 + (A)n Simple_repeat Simple_repeat 1 25 0 1446 255 111 11 chr4 111843172 111843642 -90484705 + LTR33A LTR ERVL 5 521 -2 2491 114 5 13 chr4 111843670 111844048 -90484299 - THE1C LTR MaLR 0 375 1 293 194 46 176 chr4 111844424 111844708 -90483639 - MER112 DNA MER1_type -10 250 4 1641 217 47 6 chr4 111844896 111845255 -90483092 + MLT1B LTR MaLR 1 374 -16 622 281 104 13 chr4 111846109 111846340 -90482007 + MIR SINE MIR 1 252 -10 21 36 0 0 chr4 111848145 111848173 -90480174 + AT_rich Low_complexity Low_complexity 1 28 0 2117 134 0 0 chr4 111848386 111848685 -90479662 + AluSx SINE Alu 9 307 -5 21 36 0 0 chr4 111848822 111848850 -90479497 + AT_rich Low_complexity Low_complexity 1 28 0 198 118 0 0 chr4 111849495 111849529 -90478818 + (T)n Simple_repeat Simple_repeat 1 34 0 25 0 0 0 chr4 111849933 111849958 -90478389 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr4 111850350 111850371 -90477976 + (TAA)n Simple_repeat Simple_repeat 1 21 0 373 290 98 31 chr4 111850753 111850977 -90477370 + L1ME LINE L1 5386 5624 -497 2280 141 77 17 chr4 111850996 111851400 -90476947 - MSTA LTR MaLR 0 428 1 270 358 49 12 chr4 111851402 111851564 -90476783 + L1ME LINE L1 5655 5822 -299 21 36 0 0 chr4 111852644 111852672 -90475675 + AT_rich Low_complexity Low_complexity 1 28 0 199 250 0 0 chr4 111852882 111852926 -90475421 + MIR3 SINE MIR 156 199 -9 230 247 52 0 chr4 111853079 111853156 -90475191 + L1MC4 LINE L1 6615 6695 -1347 294 29 0 0 chr4 111853156 111853191 -90475156 + (TG)n Simple_repeat Simple_repeat 1 35 0 1905 249 85 26 chr4 111853195 111853734 -90474613 + MER21B LTR ERV1 25 595 -268 800 191 66 9 chr4 111854008 111854222 -90474125 + MER21B LTR ERV1 593 862 -1 242 250 31 0 chr4 111854233 111854297 -90474050 + LTR33 LTR ERVL 142 207 -314 269 153 0 17 chr4 111854320 111854379 -90473968 + CT-rich Low_complexity Low_complexity 4 61 0 225 175 0 0 chr4 111854400 111854440 -90473907 + CT-rich Low_complexity Low_complexity 3 42 0 1490 146 17 96 chr4 111854440 111854742 -90473605 - AluJb SINE Alu -32 280 3 1769 139 52 0 chr4 111855947 111856235 -90472112 + MER2 DNA MER2_type 1 303 -42 3983 221 92 32 chr4 111858403 111859197 -90469150 - L1MD2 LINE L1 -10 6349 5604 2443 63 13 0 chr4 111859197 111859500 -90468847 - AluSp SINE Alu -6 307 1 3983 221 92 32 chr4 111859500 111860386 -90467961 - L1MD2 LINE L1 -755 5604 4557 25 90 0 0 chr4 111860418 111860485 -90467862 + AT_rich Low_complexity Low_complexity 1 67 0 204 40 0 0 chr4 111861345 111861370 -90466977 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2054 147 0 0 chr4 111861409 111861709 -90466638 - AluSx SINE Alu -12 300 1 741 254 39 0 chr4 111862202 111862383 -90465964 + MER5A DNA MER1_type 2 189 0 2124 132 86 3 chr4 111863296 111863644 -90464703 + Tigger2 DNA MER2_type 2342 2718 0 3973 221 158 40 chr4 111864419 111865723 -90462624 + L1MC4 LINE L1 6347 7826 -216 2303 75 13 7 chr4 111865723 111866031 -90462316 + AluY SINE Alu 1 310 -1 3973 221 158 40 chr4 111866031 111866115 -90462232 + L1MC4 LINE L1 7826 7899 -143 194 281 70 0 chr4 111866131 111866188 -90462159 - L3b LINE CR1 -340 1243 1183 239 371 0 0 chr4 111866321 111866383 -90461964 - L2 LINE L2 -96 3176 3115 2357 78 0 3 chr4 111866432 111866739 -90461608 + AluY SINE Alu 1 306 -5 1293 179 0 5 chr4 111866750 111866974 -90461373 + AluJo SINE Alu 85 307 -5 551 300 80 0 chr4 111867055 111867255 -90461092 - MIR SINE MIR -16 246 31 22 35 0 0 chr4 111868374 111868403 -90459944 + AT_rich Low_complexity Low_complexity 1 29 0 627 301 58 65 chr4 111868651 111869063 -90459284 + L1MEd LINE L1 42 450 -5669 2958 230 45 77 chr4 111869121 111870127 -90458220 + L1MA5 LINE L1 45 962 -6206 6699 147 51 27 chr4 111870128 111871477 -90456870 + L1MA5 LINE L1 4478 5858 -1309 2275 166 44 10 chr4 111871478 111871888 -90456459 - MSTB1 LTR MaLR 0 432 9 2107 196 46 4 chr4 111871895 111872353 -90455994 + L1MA5 LINE L1 5854 6330 -837 4899 141 45 11 chr4 111872354 111873215 -90455132 + L1MA5 LINE L1 6426 7316 -5 21 36 0 0 chr4 111873220 111873248 -90455099 + AT_rich Low_complexity Low_complexity 1 28 0 767 283 76 23 chr4 111873248 111873644 -90454703 + L1MEd LINE L1 534 950 -5169 40756 58 12 1 chr4 111873851 111879938 -90448409 + L1PA5 LINE L1 2 6154 0 304 286 17 0 chr4 111880050 111880169 -90448178 + L1MEd LINE L1 940 1060 -5059 22 0 0 0 chr4 111880414 111880436 -90447911 + AT_rich Low_complexity Low_complexity 1 22 0 201 154 0 0 chr4 111880966 111881005 -90447342 + (TA)n Simple_repeat Simple_repeat 1 39 0 272 294 88 10 chr4 111881234 111881336 -90447011 + L2 LINE L2 2826 2935 -378 562 174 19 45 chr4 111881336 111881491 -90446856 - L1MB7 LINE L1 0 6184 6034 313 111 0 0 chr4 111881964 111882009 -90446338 - Alu SINE Alu -5 297 253 1944 165 0 3 chr4 111882125 111882428 -90445919 - AluSx SINE Alu -10 302 1 21 71 0 0 chr4 111883100 111883142 -90445205 + AT_rich Low_complexity Low_complexity 1 42 0 3079 215 53 13 chr4 111883146 111883936 -90444411 - L1ME1 LINE L1 -7 6159 5338 2786 126 70 10 chr4 111883978 111884464 -90443883 + L1MC/D LINE L1 5285 5799 -545 191 304 101 13 chr4 111885683 111885762 -90442585 + L2 LINE L2 3169 3254 -18 321 188 271 0 chr4 111885812 111885908 -90442439 - MER112 DNA MER1_type -5 255 134 33 73 0 0 chr4 111885919 111885987 -90442360 + AT_rich Low_complexity Low_complexity 1 68 0 1910 151 35 18 chr4 111886007 111886345 -90442002 + MER2 DNA MER2_type 1 344 0 189 74 0 0 chr4 111887469 111887496 -90440851 + (TG)n Simple_repeat Simple_repeat 2 28 0 1845 99 4 8 chr4 111888442 111888695 -90439652 + AluSg SINE Alu 49 300 -10 207 186 0 0 chr4 111889447 111889490 -90438857 + (TG)n Simple_repeat Simple_repeat 2 44 0 767 279 42 9 chr4 111889875 111890090 -90438257 - MIR SINE MIR 0 262 41 2360 160 44 12 chr4 111891068 111891481 -90436866 - MSTB LTR MaLR 0 426 1 23 0 0 0 chr4 111892577 111892600 -90435747 + AT_rich Low_complexity Low_complexity 1 23 0 350 216 78 43 chr4 111892607 111892723 -90435624 + L2 LINE L2 2310 2429 -885 817 250 146 54 chr4 111892744 111892909 -90435438 + L2 LINE L2 2737 2885 -428 1831 176 9 20 chr4 111892909 111893250 -90435097 - MER1B DNA MER1_type 0 337 1 817 250 146 54 chr4 111893250 111893552 -90434795 + L2 LINE L2 2885 3246 -67 33 0 0 0 chr4 111895063 111895096 -90433251 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr4 111895811 111895844 -90432503 + AT_rich Low_complexity Low_complexity 1 33 0 241 228 228 10 chr4 111895986 111896087 -90432260 - MIR SINE MIR -14 248 126 1716 248 187 21 chr4 111896324 111896448 -90431899 + L2 LINE L2 2057 2159 -1154 621 246 95 4 chr4 111896448 111896680 -90431667 + MER112 DNA MER1_type 4 256 0 1716 248 187 21 chr4 111896680 111897497 -90430850 + L2 LINE L2 2159 3155 -158 421 299 99 50 chr4 111897873 111898074 -90430273 + MIR SINE MIR 5 215 -47 180 0 0 0 chr4 111898568 111898588 -90429759 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr4 111899062 111899083 -90429264 + AT_rich Low_complexity Low_complexity 1 21 0 1837 104 61 30 chr4 111899137 111899434 -90428913 + AluSx SINE Alu 1 306 -6 432 215 168 0 chr4 111901865 111901972 -90426375 - L2 LINE L2 -1 3312 3188 708 361 107 22 chr4 111902633 111903129 -90425218 - L2 LINE L2 -517 2797 2214 1653 134 57 28 chr4 111903129 111903412 -90424935 + AluJo SINE Alu 13 303 -9 708 361 107 22 chr4 111903412 111903672 -90424675 - L2 LINE L2 -1100 2214 1977 416 333 31 8 chr4 111903676 111903805 -90424542 - L2 LINE L2 -4 3268 3137 336 221 0 0 chr4 111904049 111904117 -90424230 - MIR SINE MIR -1 261 194 2949 122 70 5 chr4 111904131 111904574 -90423773 - MER1A DNA MER1_type 0 529 58 472 338 155 47 chr4 111904676 111905125 -90423222 - L2 LINE L2 -634 2680 2281 801 246 51 6 chr4 111905125 111905300 -90423047 - MER5A DNA MER1_type 0 189 7 472 338 155 47 chr4 111905300 111906190 -90422157 - L2 LINE L2 -1033 2281 1003 27 61 0 15 chr4 111907197 111907231 -90421116 + AT_rich Low_complexity Low_complexity 1 35 -30 2611 48 0 3 chr4 111907231 111907540 -90420807 + AluY SINE Alu 1 308 -3 27 61 0 15 chr4 111907540 111907571 -90420776 + AT_rich Low_complexity Low_complexity 35 65 0 21 0 0 0 chr4 111908198 111908219 -90420128 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr4 111908921 111908958 -90419389 + (TG)n Simple_repeat Simple_repeat 2 38 0 420 254 109 7 chr4 111910384 111910522 -90417825 - MIR SINE MIR -1 261 110 317 303 56 42 chr4 111910534 111910676 -90417671 + MIR SINE MIR 119 262 0 305 125 0 71 chr4 111911335 111911391 -90416956 - MER5A DNA MER1_type 0 189 138 1104 181 75 15 chr4 111911405 111911589 -90416758 + MER63C DNA MER1_type 253 459 -601 1852 184 0 0 chr4 111911589 111911894 -90416453 - AluJb SINE Alu -4 308 4 1104 181 75 15 chr4 111911894 111911962 -90416385 + MER63C DNA MER1_type 459 521 -409 747 235 54 0 chr4 111911962 111912128 -90416219 - MER58B DNA MER1_type 0 341 167 2979 191 39 25 chr4 111912501 111913272 -90415075 + L1ME1 LINE L1 5188 5972 -194 754 166 0 55 chr4 111913395 111913514 -90414833 + L1MA10 LINE L1 6176 6285 -49 1932 132 10 16 chr4 111913514 111913817 -90414530 + AluSx SINE Alu 1 301 -11 754 166 0 55 chr4 111913817 111913860 -90414487 + L1MA10 LINE L1 6285 6329 -5 1690 151 7 21 chr4 111914470 111914749 -90413598 + AluJb SINE Alu 35 309 -3 1907 145 0 17 chr4 111915034 111915331 -90413016 + AluSx SINE Alu 1 292 -20 495 258 122 87 chr4 111915331 111915792 -90412555 - L1ME2 LINE L1 -236 5928 5451 246 302 117 45 chr4 111916733 111916912 -90411435 - L2 LINE L2 0 3313 3122 2249 128 0 0 chr4 111917158 111917463 -90410884 - AluSx SINE Alu -7 305 1 24 0 0 0 chr4 111918727 111918751 -90409596 + AT_rich Low_complexity Low_complexity 1 24 0 2040 143 0 10 chr4 111919744 111920044 -90408303 - AluJb SINE Alu -15 297 1 454 290 65 53 chr4 111921496 111921686 -90406661 - MIR SINE MIR 0 262 67 2290 95 0 28 chr4 111921686 111922003 -90406344 - AluSq SINE Alu -5 308 1 454 290 65 53 chr4 111922003 111922057 -90406290 - MIR SINE MIR -195 67 15 1995 113 0 80 chr4 111923276 111923602 -90404745 + AluSq SINE Alu 1 300 -13 22 0 0 0 chr4 111923984 111924006 -90404341 + AT_rich Low_complexity Low_complexity 1 22 0 21 89 0 0 chr4 111924442 111924498 -90403849 + AT_rich Low_complexity Low_complexity 1 56 0 475 329 59 18 chr4 111925896 111926236 -90402111 - MARNA DNA Mariner -200 386 33 733 103 103 0 chr4 111927888 111928014 -90400333 + MER85 DNA T2_type 1 139 0 463 230 22 37 chr4 111928019 111928154 -90400193 - LTR40a LTR ERVL -1 518 386 336 219 225 50 chr4 111929147 111929307 -90399040 + L2 LINE L2 3126 3313 0 184 333 0 0 chr4 111929472 111929523 -90398824 + MIR SINE MIR 23 73 -135 204 135 0 0 chr4 111930832 111930869 -90397478 + (A)n Simple_repeat Simple_repeat 1 37 0 389 156 16 0 chr4 111930870 111930934 -90397413 - MER4B LTR ERV1 -545 65 1 578 243 221 17 chr4 111930934 111931115 -90397232 + MIR SINE MIR 44 261 -1 236 265 31 10 chr4 111931227 111931325 -90397022 + (TA)n Simple_repeat Simple_repeat 2 101 0 359 278 85 103 chr4 111932077 111932401 -90395946 + L1ME4a LINE L1 5498 5814 -307 2434 68 0 3 chr4 111932401 111932708 -90395639 + AluSg SINE Alu 1 306 -4 359 278 85 103 chr4 111932708 111932808 -90395539 + L1ME4a LINE L1 5814 5914 -207 31 0 0 0 chr4 111932908 111932939 -90395408 + AT_rich Low_complexity Low_complexity 1 31 0 188 333 0 0 chr4 111933152 111933209 -90395138 - L2 LINE L2 0 3313 3257 1890 185 28 3 chr4 111933673 111934029 -90394318 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr4 111934697 111934720 -90393627 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr4 111934867 111934903 -90393444 + AT_rich Low_complexity Low_complexity 1 36 0 188 331 36 72 chr4 111935399 111935565 -90392782 - L3 LINE CR1 -575 1002 843 240 35 0 0 chr4 111935870 111935899 -90392448 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 281 118 20 0 chr4 111935926 111935977 -90392370 + CT-rich Low_complexity Low_complexity 1 52 0 2472 194 34 76 chr4 111936401 111937082 -90391265 + MLT1E1 LTR MaLR 3 654 0 3643 198 27 42 chr4 111939080 111940070 -90388277 + L1MB7 LINE L1 5213 6184 0 407 293 71 37 chr4 111940134 111940458 -90387889 + L1MC4a LINE L1 5548 5882 -1926 189 74 0 0 chr4 111940587 111940614 -90387733 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1629 179 11 4 chr4 111940619 111940898 -90387449 - AluJb SINE Alu -31 281 1 491 0 17 0 chr4 111940938 111940997 -90387350 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 31 0 0 0 chr4 111941020 111941051 -90387296 + AT_rich Low_complexity Low_complexity 1 31 0 1746 92 0 18 chr4 111941255 111941484 -90386863 + AluSg/x SINE Alu 82 306 -6 209 333 92 17 chr4 111942926 111943046 -90385301 + MIR3 SINE MIR 37 165 -43 495 226 14 104 chr4 111943060 111943272 -90385075 - L2 LINE L2 -6 3307 3115 234 271 131 0 chr4 111943635 111943742 -90384605 + HAL1 LINE L1 37 157 -2350 227 229 114 14 chr4 111943841 111943911 -90384436 + MLT1F1 LTR MaLR 1 77 -490 1030 247 5 0 chr4 111943924 111944143 -90384204 + AluJo SINE Alu 1 220 -92 21 0 0 0 chr4 111944166 111944187 -90384160 + AT_rich Low_complexity Low_complexity 1 21 0 1911 100 0 15 chr4 111944187 111944447 -90383900 - AluSc SINE Alu -53 256 1 31 26 0 0 chr4 111944453 111944491 -90383856 + AT_rich Low_complexity Low_complexity 1 38 0 978 162 0 13 chr4 111944491 111944669 -90383678 + AluJb SINE Alu 130 305 0 641 334 111 31 chr4 111944673 111945062 -90383285 + LTR33 LTR ERVL 102 521 0 1004 244 52 41 chr4 111945070 111945435 -90382912 + HAL1 LINE L1 2139 2507 0 2914 140 44 50 chr4 111945455 111945662 -90382685 + L1MB2 LINE L1 5587 5794 -377 2182 131 0 3 chr4 111945662 111945974 -90382373 - AluSp SINE Alu -2 311 1 2914 140 44 50 chr4 111945974 111946352 -90381995 + L1MB2 LINE L1 5794 6169 -2 183 302 161 40 chr4 111946353 111946502 -90381845 - MIR3 SINE MIR -39 169 3 559 157 26 17 chr4 111946517 111946632 -90381715 + L1MD2 LINE L1 6234 6349 -10 1077 272 101 11 chr4 111947009 111948055 -90380292 + L1ME3 LINE L1 4901 6156 -6 1910 227 73 11 chr4 111948068 111948138 -90380209 + L1MC4 LINE L1 5397 4997 -1166 393 22 0 0 chr4 111948138 111948184 -90380163 + (TAA)n Simple_repeat Simple_repeat 3 48 0 1910 227 73 11 chr4 111948184 111948690 -90379657 + L1MC4 LINE L1 4996 5469 -694 * 3409 177 33 11 chr4 111948185 111948845 -90379502 + L1MB8 LINE L1 5504 6178 0 531 238 177 52 chr4 111948844 111948919 -90379428 + L1MC4a LINE L1 5755 5819 -1989 * 2235 104 0 26 chr4 111948919 111949227 -90379120 + AluSp SINE Alu 1 300 -13 531 238 177 52 chr4 111949227 111949496 -90378851 + L1MC4a LINE L1 5819 6142 -1666 21 0 0 0 chr4 111949730 111949751 -90378596 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr4 111949770 111949809 -90378538 + (CA)n Simple_repeat Simple_repeat 2 40 0 24 0 0 0 chr4 111951231 111951255 -90377092 + AT_rich Low_complexity Low_complexity 1 24 0 1371 170 38 4 chr4 111951255 111951490 -90376857 - AluJo SINE Alu -26 286 44 461 88 35 44 chr4 111952582 111952696 -90375651 + (TCTA)n Simple_repeat Simple_repeat 3 115 0 370 251 88 55 chr4 111952795 111952979 -90375368 + MER20B DNA MER1_type 13 204 -15 1543 149 8 12 chr4 111953363 111953612 -90374735 + AluJb SINE Alu 61 308 -4 22 35 0 0 chr4 111953765 111953794 -90374553 + AT_rich Low_complexity Low_complexity 1 29 0 234 258 76 0 chr4 111954961 111955027 -90373320 + MER20B DNA MER1_type 1 71 -712 2087 104 0 0 chr4 111956058 111956338 -90372009 + AluSg SINE Alu 21 300 -10 284 353 17 0 chr4 111957074 111957190 -90371157 + L2 LINE L2 2934 3051 -221 436 254 65 7 chr4 111957325 111957463 -90370884 - MIR SINE MIR 0 262 117 447 255 87 31 chr4 111957472 111957633 -90370714 + MLT1J LTR MaLR 1 170 -341 868 179 0 48 chr4 111957839 111958007 -90370340 + FRAM SINE Alu 1 160 -6 235 316 184 0 chr4 111958099 111958175 -90370172 - MIR SINE MIR -149 113 24 * 251 277 36 24 chr4 111958174 111958257 -90370090 + L2 LINE L2 3189 3272 0 1936 232 33 23 chr4 111958977 111959460 -90368887 - MER74B LTR ERVL -77 545 58 542 278 98 33 chr4 111959571 111959816 -90368531 - MIR SINE MIR 0 262 2 270 283 186 18 chr4 111960220 111960333 -90368014 - MER5A DNA MER1_type -23 166 35 * 337 298 19 39 chr4 111960252 111960356 -90367991 + MER5A DNA MER1_type 88 189 0 471 35 0 0 chr4 111960786 111960843 -90367504 + (GA)n Simple_repeat Simple_repeat 2 58 0 2385 100 0 0 chr4 111961470 111961780 -90366567 + AluSg SINE Alu 1 310 0 233 286 77 11 chr4 111961802 111961893 -90366454 + MIR SINE MIR 39 135 -73 591 304 114 20 chr4 111961898 111962325 -90366022 + L1ME4a LINE L1 5441 5905 -216 201 213 0 0 chr4 111962352 111962399 -90365948 + GA-rich Low_complexity Low_complexity 2 48 0 386 271 127 52 chr4 111962742 111963263 -90365084 - L1ME2 LINE L1 -217 5947 5388 1948 129 37 3 chr4 111965490 111965785 -90362562 + AluJb SINE Alu 1 305 -7 252 200 80 0 chr4 111965788 111965838 -90362509 - MIR3 SINE MIR -29 179 126 184 233 0 0 chr4 111966012 111966055 -90362292 + L2 LINE L2 3265 3307 -6 340 323 0 0 chr4 111966323 111966422 -90361925 + GA-rich Low_complexity Low_complexity 2 100 0 412 211 299 41 chr4 111966935 111967082 -90361265 - HAL1 LINE L1 -659 1848 1664 23 33 0 0 chr4 111967877 111967907 -90360440 + AT_rich Low_complexity Low_complexity 1 30 0 262 228 125 0 chr4 111968109 111968245 -90360102 + MER113 DNA MER1_type? 92 244 -277 237 256 0 39 chr4 111968355 111968433 -90359914 + HAL1 LINE L1 292 366 -2141 2561 261 106 58 chr4 111968446 111969782 -90358565 + HAL1 LINE L1 1104 2502 -5 434 315 60 22 chr4 111969807 111970255 -90358092 + L1ME4a LINE L1 4672 5136 -1010 542 296 143 27 chr4 111970502 111970914 -90357433 + L1ME4a LINE L1 5412 5871 -250 213 39 0 0 chr4 111972228 111972254 -90356093 + (GAAAA)n Simple_repeat Simple_repeat 2 27 0 25 31 0 0 chr4 111973197 111973229 -90355118 + AT_rich Low_complexity Low_complexity 1 32 0 373 275 77 55 chr4 111975451 111975633 -90352714 - MER5A DNA MER1_type -3 186 1 24 0 0 0 chr4 111975897 111975921 -90352426 + AT_rich Low_complexity Low_complexity 1 24 0 278 347 53 0 chr4 111977280 111977375 -90350972 + L2 LINE L2 3158 3257 -15 27 0 0 0 chr4 111977464 111977491 -90350856 + AT_rich Low_complexity Low_complexity 1 27 0 240 216 23 11 chr4 111978912 111979000 -90349347 + T-rich Low_complexity Low_complexity 2 90 0 2212 96 17 3 chr4 111979116 111979408 -90348939 + AluSg SINE Alu 1 296 -14 279 366 147 0 chr4 111979417 111979608 -90348739 + MIR SINE MIR 32 250 -12 314 156 0 16 chr4 111980525 111980589 -90347758 - L1PB3 LINE L1 -7 6147 6085 252 313 157 0 chr4 111980605 111980739 -90347608 + MIR SINE MIR 97 251 -11 243 103 0 0 chr4 111980922 111980961 -90347386 + (TG)n Simple_repeat Simple_repeat 2 40 0 285 332 48 58 chr4 111982700 111983116 -90345231 - L2 LINE L2 -366 2948 2537 * 1014 204 83 4 chr4 111983074 111983304 -90345043 + MIR SINE MIR 11 258 -4 583 364 48 12 chr4 111983429 111983764 -90344583 - L2 LINE L2 -919 2395 2049 732 301 45 48 chr4 111983895 111984314 -90344033 + MLT1J LTR MaLR 86 503 -8 505 162 180 9 chr4 111986440 111986551 -90341796 - L2 LINE L2 -1 3312 3183 204 205 0 0 chr4 111986746 111986785 -90341562 + (TG)n Simple_repeat Simple_repeat 1 39 0 360 282 127 32 chr4 111986906 111987126 -90341221 + MLT1J LTR MaLR 266 506 -5 260 326 35 12 chr4 111987128 111987214 -90341133 - MIR SINE MIR -155 107 20 904 267 109 82 chr4 111988357 111988892 -90339455 - MLT1H1 LTR MaLR -6 549 5 626 321 37 16 chr4 111989171 111989417 -90338930 - MIR SINE MIR -4 258 8 243 359 104 27 chr4 111989898 111990118 -90338229 + L2 LINE L2 2855 3091 -222 410 269 68 42 chr4 111990121 111990381 -90337966 - MLT1H LTR MaLR 0 549 286 395 159 11 80 chr4 111990423 111990511 -90337836 - MLT1H LTR MaLR -374 175 94 22 0 0 0 chr4 111990540 111990562 -90337785 + AT_rich Low_complexity Low_complexity 1 22 0 598 184 28 14 chr4 111990654 111990795 -90337552 - L1MD3 LINE L1 -10 7985 7843 * 1030 207 131 20 chr4 111990790 111991007 -90337340 - L1MC4a LINE L1 -509 7299 7108 2158 98 51 0 chr4 111991007 111991302 -90337045 - AluSg SINE Alu 0 310 1 1030 207 131 20 chr4 111991302 111991442 -90336905 - L1MC4a LINE L1 -700 7108 6902 1539 216 121 18 chr4 111991445 111992001 -90336346 + MER114 LTR ERV 36 648 0 2068 113 128 28 chr4 111993000 111993389 -90334958 + MSTA LTR MaLR 1 428 0 25 0 0 0 chr4 111994008 111994033 -90334314 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr4 111998083 111998108 -90330239 + AT_rich Low_complexity Low_complexity 1 25 0 3929 85 0 9 chr4 111999308 111999847 -90328500 - L1PA8A LINE L1 -1 6130 5597 1606 171 3 0 chr4 111999955 112000241 -90328106 - L1 LINE L1 -1408 4738 4452 * 3261 146 39 4 chr4 112000239 112000822 -90327525 + L1 LINE L1 4728 5332 -829 1067 44 0 0 chr4 112000822 112000958 -90327389 + L1PA12 LINE L1 6032 6168 0 3261 146 39 4 chr4 112000958 112000973 -90327374 + L1 LINE L1 5332 5345 -816 633 42 10 21 chr4 112000972 112001068 -90327279 + L1MA4 LINE L1 6088 6182 -118 * 726 131 0 15 chr4 112001097 112001234 -90327113 + L1MA4 LINE L1 6165 6299 -1 1773 118 34 3 chr4 112001244 112001541 -90326806 + L1M2 LINE L1 5299 5604 -687 856 193 51 28 chr4 112001541 112001717 -90326630 + MLT1A1 LTR MaLR 186 365 0 474 279 216 0 chr4 112001717 112001938 -90326409 + MLT1K LTR MaLR 320 588 0 195 287 124 70 chr4 112002103 112002232 -90326115 + L2 LINE L2 3137 3272 0 553 272 137 19 chr4 112002691 112003004 -90325343 - L1ME4a LINE L1 -11 6110 5761 21 36 0 0 chr4 112004356 112004384 -90323963 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 112004767 112004788 -90323559 + AT_rich Low_complexity Low_complexity 1 21 0 200 189 0 0 chr4 112004883 112004920 -90323427 + (TG)n Simple_repeat Simple_repeat 2 38 0 801 258 21 0 chr4 112006322 112006512 -90321835 + MIR SINE MIR 69 262 0 450 256 109 28 chr4 112007622 112007833 -90320514 - L2 LINE L2 -5 3308 3081 1253 281 96 11 chr4 112007835 112008284 -90320063 + LTR16C LTR ERVL 5 491 0 3488 252 91 0 chr4 112008311 112009305 -90319042 - L2 LINE L2 -290 3023 1941 722 117 8 23 chr4 112011785 112011913 -90316434 - L1MD1 LINE L1 -1 6241 6116 198 103 0 0 chr4 112012413 112012442 -90315905 + (TCTA)n Simple_repeat Simple_repeat 1 29 0 1605 203 52 9 chr4 112013734 112014064 -90314283 - MER2 DNA MER2_type 0 344 1 211 319 0 0 chr4 112015335 112015404 -90312943 - L2 LINE L2 -2303 1011 943 1651 174 13 17 chr4 112016105 112016403 -90311944 - AluJo SINE Alu -13 299 3 28 0 0 0 chr4 112016515 112016543 -90311804 + AT_rich Low_complexity Low_complexity 1 28 0 480 271 119 14 chr4 112016608 112016818 -90311529 - L2 LINE L2 -1604 1710 1479 644 245 61 71 chr4 112016918 112017212 -90311135 - L2 LINE L2 -2493 821 531 254 282 28 0 chr4 112017469 112017540 -90310807 + MIR SINE MIR 179 251 -11 2225 71 0 4 chr4 112017715 112017995 -90310352 + AluY SINE Alu 1 279 -32 189 0 0 0 chr4 112017995 112018016 -90310331 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 416 253 54 81 chr4 112018365 112018620 -90309727 + L1ME LINE L1 5435 5678 -459 210 245 0 0 chr4 112018745 112018798 -90309549 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 264 273 218 12 chr4 112018933 112019098 -90309249 + L2 LINE L2 2926 3124 -189 522 70 0 0 chr4 112019106 112019177 -90309170 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 2119 114 6 22 chr4 112019177 112019493 -90308854 - AluSx SINE Alu -1 311 1 450 211 46 103 chr4 112019497 112019691 -90308656 + L2 LINE L2 3085 3267 -46 219 290 58 97 chr4 112021172 112021327 -90307020 + L3 LINE CR1 1392 1540 -37 2248 88 0 0 chr4 112021484 112021769 -90306578 + AluY SINE Alu 1 285 -26 962 209 0 0 chr4 112021911 112022088 -90306259 - FRAM SINE Alu -5 171 1 316 138 31 0 chr4 112022260 112022325 -90306022 - L1MA9 LINE L1 -33 6279 6213 2230 117 3 0 chr4 112023212 112023520 -90304827 + AluSx SINE Alu 1 309 -3 241 266 70 95 chr4 112023866 112024024 -90304323 + MIR SINE MIR 62 215 -47 243 243 0 0 chr4 112024554 112024624 -90303723 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 978 260 28 12 chr4 112024629 112024883 -90303464 + MIR SINE MIR 5 262 0 1018 294 98 11 chr4 112025453 112025935 -90302412 - L2 LINE L2 -10 3303 2779 656 262 109 11 chr4 112026172 112026538 -90301809 + L1M4 LINE L1 2187 2588 -3558 513 245 68 31 chr4 112026648 112027003 -90301344 + L1M4 LINE L1 2795 3162 -2984 2368 83 0 3 chr4 112027061 112027362 -90300985 - AluSg SINE Alu -10 300 1 423 288 37 85 chr4 112027383 112027924 -90300423 + L1MEd LINE L1 701 1215 -4904 1142 219 5 0 chr4 112027942 112028152 -90300195 + L1PA13 LINE L1 1 211 -6576 744 22 0 0 chr4 112030731 112030821 -90297526 + (TC)n Simple_repeat Simple_repeat 1 90 0 2183 271 55 30 chr4 112030953 112031887 -90296460 + L1MC4 LINE L1 7085 8041 -1 642 261 36 71 chr4 112031992 112032245 -90296102 + MIR SINE MIR 18 261 -1 193 323 101 61 chr4 112032280 112032478 -90295869 - L2 LINE L2 -39 3233 3028 23 0 0 0 chr4 112032763 112032786 -90295561 + AT_rich Low_complexity Low_complexity 1 23 0 289 261 0 0 chr4 112032919 112032984 -90295363 + L1MC/D LINE L1 5719 5783 -2025 328 322 128 48 chr4 112033544 112033833 -90294514 - L2 LINE L2 -88 3184 2873 206 360 58 88 chr4 112034192 112034453 -90293894 - L2 LINE L2 -14 3258 3006 1680 183 7 13 chr4 112034515 112034815 -90293532 + AluSx SINE Alu 1 298 -14 280 270 280 5 chr4 112035233 112035444 -90292903 + L2 LINE L2 2247 2515 -799 426 306 67 11 chr4 112035445 112035625 -90292722 - MIR SINE MIR -6 256 67 271 324 56 28 chr4 112036634 112036742 -90291605 + L2 LINE L2 3158 3268 -4 190 307 68 23 chr4 112037160 112037248 -90291099 - MIR SINE MIR -123 139 48 22 0 0 0 chr4 112037424 112037446 -90290901 + AT_rich Low_complexity Low_complexity 1 22 0 2077 130 3 0 chr4 112037510 112037811 -90290536 + AluSx SINE Alu 1 302 -10 22 56 0 0 chr4 112039274 112039310 -90289037 + AT_rich Low_complexity Low_complexity 1 36 0 2184 103 3 3 chr4 112041816 112042107 -90286240 + AluY SINE Alu 3 293 -18 354 283 107 118 chr4 112043410 112044036 -90284311 - L1M2 LINE L1 -5650 1199 581 732 218 82 27 chr4 112044660 112044880 -90283467 + L2 LINE L2 2838 3069 -244 900 256 116 31 chr4 112044880 112045200 -90283147 + L2 LINE L2 2959 3305 -8 376 357 26 82 chr4 112045886 112046191 -90282156 + L2 LINE L2 2969 3256 -16 623 283 120 12 chr4 112046660 112046985 -90281362 - L2 LINE L2 -9 3304 2945 675 263 58 27 chr4 112050430 112050723 -90277624 + L1MC4a LINE L1 5648 5949 -1859 955 119 0 0 chr4 112051153 112051279 -90277068 + AluSx SINE Alu 1 126 -186 1162 118 18 12 chr4 112051332 112051502 -90276845 + AluSx SINE Alu 126 296 -16 732 262 85 44 chr4 112051864 112052105 -90276242 + L1MC4a LINE L1 5575 5835 -1973 1927 157 3 0 chr4 112052105 112052405 -90275942 + AluJb SINE Alu 1 301 -11 732 262 85 44 chr4 112052405 112052503 -90275844 + L1MC4a LINE L1 5835 5928 -1880 180 0 0 0 chr4 112055334 112055354 -90272993 + (A)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr4 112057291 112057312 -90271035 + AT_rich Low_complexity Low_complexity 1 21 0 362 244 109 84 chr4 112057336 112057574 -90270773 + MLT1J LTR MaLR 101 344 -167 1498 120 46 0 chr4 112058557 112058773 -90269574 + AluSg/x SINE Alu 71 296 -14 269 346 15 39 chr4 112059693 112059823 -90268524 - MIR SINE MIR -50 212 86 207 0 0 0 chr4 112060743 112060766 -90267581 + (T)n Simple_repeat Simple_repeat 1 23 0 257 174 0 0 chr4 112060777 112060823 -90267524 + L1MC4a LINE L1 6663 6708 -1100 1272 249 93 25 chr4 112162464 112162818 -90165529 + L3b LINE CR1 1138 1515 -68 1903 142 0 46 chr4 112164050 112164375 -90163972 - AluJo SINE Alu -2 310 1 21 57 0 0 chr4 112164525 112164560 -90163787 + AT_rich Low_complexity Low_complexity 1 35 0 564 226 168 0 chr4 112165055 112165210 -90163137 - MER5A DNA MER1_type 0 189 9 703 238 72 0 chr4 112165820 112166001 -90162346 + MER20 DNA MER1_type 7 200 -19 694 253 52 6 chr4 112166011 112166185 -90162162 + MER5A DNA MER1_type 1 182 -7 287 305 58 46 chr4 112166304 112166478 -90161869 + L2 LINE L2 1863 2038 -1276 185 94 31 0 chr4 112166666 112166698 -90161649 + T-rich Low_complexity Low_complexity 4 36 0 2896 153 69 5 chr4 112166865 112167442 -90160905 + L1MA5 LINE L1 5685 6298 -2 901 98 148 44 chr4 112167525 112167602 -90160745 - MER30 DNA MER1_type -28 202 134 324 0 0 0 chr4 112167602 112167638 -90160709 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 901 98 148 44 chr4 112167638 112167743 -90160604 - MER30 DNA MER1_type -96 134 1 29 28 0 0 chr4 112167808 112167844 -90160503 + AT_rich Low_complexity Low_complexity 1 36 0 240 256 244 0 chr4 112168006 112168084 -90160263 + MER5A DNA MER1_type 10 106 -83 854 204 28 6 chr4 112168266 112168447 -90159900 + MER5A DNA MER1_type 5 189 0 438 315 43 6 chr4 112168681 112168843 -90159504 - MIR SINE MIR -46 216 49 489 208 0 66 chr4 112168992 112169160 -90159187 + L1MC4 LINE L1 7871 7966 -29 319 268 99 14 chr4 112170064 112170206 -90158141 - MIR SINE MIR -100 162 9 372 319 11 55 chr4 112170307 112170489 -90157858 - L1ME4a LINE L1 -14 6107 5934 1734 84 0 4 chr4 112170520 112170757 -90157590 + THE1B LTR MaLR 129 364 0 1646 175 55 3 chr4 112171863 112172155 -90156192 - AluJb SINE Alu 0 312 6 628 52 0 42 chr4 112172440 112172536 -90155811 - L1PA5 LINE L1 0 6154 6063 33102 72 23 4 chr4 112172536 112177210 -90151137 - L1P LINE L1 -1374 4772 11 9764 28 2 0 chr4 112177262 112179206 -90149141 - L1PA2 LINE L1 0 6155 4213 2028 144 43 26 chr4 112179580 112179880 -90148467 - L1MA5 LINE L1 0 6300 5990 2047 98 0 8 chr4 112179880 112180144 -90148203 - AluSg SINE Alu -16 294 33 2028 144 43 26 chr4 112180144 112180259 -90148088 - L1MA5 LINE L1 -310 5990 5878 1422 243 66 16 chr4 112180718 112181097 -90147250 - MLT1E LTR MaLR -3 590 193 446 291 60 28 chr4 112184164 112184346 -90144001 + MIR SINE MIR 62 249 -13 227 277 12 0 chr4 112184362 112184445 -90143902 + (TAA)n Simple_repeat Simple_repeat 1 84 0 519 263 117 39 chr4 112185213 112185392 -90142955 - MIR SINE MIR -3 259 67 463 261 131 40 chr4 112185860 112186059 -90142288 - MIR SINE MIR 0 262 46 450 240 8 41 chr4 112186626 112186747 -90141600 - MIR SINE MIR -101 161 45 263 286 60 0 chr4 112188508 112188592 -90139755 + MIR3 SINE MIR 82 170 -38 217 302 32 16 chr4 112188792 112188855 -90139492 - L2 LINE L2 -1 3271 3208 188 315 27 14 chr4 112188874 112188947 -90139400 + L3b LINE CR1 1340 1413 -170 2527 40 0 13 chr4 112189817 112190121 -90138226 + AluY SINE Alu 1 300 -11 225 299 118 16 chr4 112190832 112190959 -90137388 - MIR SINE MIR -51 211 72 392 253 27 27 chr4 112191072 112191222 -90137125 + L1ME4a LINE L1 5769 5918 -203 194 192 19 0 chr4 112191263 112191315 -90137032 + (TA)n Simple_repeat Simple_repeat 2 54 0 250 156 143 13 chr4 112192130 112192207 -90136140 + MLT1L LTR MaLR 521 607 -8 555 308 40 18 chr4 112192214 112192438 -90135909 - MIR SINE MIR -6 256 28 402 260 130 25 chr4 112192667 112192881 -90135466 + MIR SINE MIR 3 231 -31 257 328 45 94 chr4 112193084 112193349 -90134998 - L2 LINE L2 -79 3193 2942 251 326 11 0 chr4 112193360 112193449 -90134898 + MIR SINE MIR 170 259 -3 333 391 0 0 chr4 112193945 112194083 -90134264 + L3 LINE CR1 1043 1180 -397 1127 256 56 79 chr4 112194252 112194972 -90133375 + L1ME3A LINE L1 5468 6170 0 1458 185 30 83 chr4 112196237 112196632 -90131715 + MLT1B LTR MaLR 17 390 0 440 271 74 0 chr4 112196741 112196863 -90131484 - L2 LINE L2 -1 3312 3182 199 50 75 0 chr4 112197535 112197575 -90130772 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 291 267 158 24 chr4 112197894 112198059 -90130288 + LTR33A LTR ERVL 276 462 -61 589 220 80 44 chr4 112198556 112198969 -90129378 - L1MEc LINE L1 -4110 2286 1859 1915 140 0 7 chr4 112198973 112199153 -90129194 - AluSx SINE Alu 0 313 134 2421 60 7 3 chr4 112199153 112199452 -90128895 - AluY SINE Alu -11 300 1 1915 140 0 7 chr4 112199452 112199585 -90128762 - AluSx SINE Alu -179 134 2 21 0 0 0 chr4 112199585 112199606 -90128741 + AT_rich Low_complexity Low_complexity 1 21 0 8006 183 11 10 chr4 112199606 112202859 -90125488 - L1PB1 LINE L1 -7 6860 3606 * 9102 102 57 8 chr4 112202858 112204370 -90123977 - L1PB1 LINE L1 -3978 2885 1300 2201 131 0 0 chr4 112204403 112204709 -90123638 - AluSc SINE Alu -3 306 1 2837 7 0 0 chr4 112204715 112205023 -90123324 - AluYa5 SINE Alu -3 308 1 1937 281 74 21 chr4 112205031 112206119 -90122228 - L1MEc LINE L1 -4554 1842 697 1167 246 121 34 chr4 112206121 112206568 -90121779 - MLT1D LTR MaLR -7 498 13 2233 240 97 41 chr4 112206717 112207738 -90120609 - L2 LINE L2 -15 3298 2213 579 289 87 6 chr4 112207965 112208138 -90120209 - MIR SINE MIR -56 206 20 204 222 0 22 chr4 112210284 112210329 -90118018 + (TG)n Simple_repeat Simple_repeat 1 44 0 951 230 11 0 chr4 112211069 112211256 -90117091 - MER5A DNA MER1_type 0 189 1 1260 184 20 0 chr4 112211408 112211658 -90116689 + MER72 LTR ERV1 468 722 0 275 247 0 32 chr4 112211660 112211753 -90116594 - MLT1J LTR MaLR -45 466 377 552 221 34 7 chr4 112211811 112211960 -90116387 + MLT1G1 LTR MaLR 237 389 -206 426 235 12 0 chr4 112212177 112212262 -90116085 - L2 LINE L2 -37 3276 3191 500 342 168 39 chr4 112212321 112213534 -90114813 + L2 LINE L2 1385 2754 -560 9198 191 60 33 chr4 112213898 112214248 -90114099 - L1PB1 LINE L1 -7 6860 6521 339 25 0 0 chr4 112214248 112214288 -90114059 + (TG)n Simple_repeat Simple_repeat 2 41 0 9198 191 60 33 chr4 112214288 112215657 -90112690 - L1PB1 LINE L1 -346 6521 5190 243 61 0 0 chr4 112215657 112215690 -90112657 + (TTG)n Simple_repeat Simple_repeat 1 33 0 9198 191 60 33 chr4 112215690 112216759 -90111588 - L1PB1 LINE L1 -1677 5190 4151 1714 143 48 85 chr4 112216759 112217094 -90111253 + THE1B LTR MaLR 1 322 -42 2165 135 0 0 chr4 112217094 112217390 -90110957 - AluSx SINE Alu -16 296 1 1714 143 48 85 chr4 112217390 112217432 -90110915 + THE1B LTR MaLR 322 364 0 11253 106 9 6 chr4 112217432 112219008 -90109339 + THE1B-int LTR MaLR 1 1580 0 2010 147 51 20 chr4 112219008 112219361 -90108986 + THE1B LTR MaLR 1 364 0 9198 191 60 33 chr4 112219361 112222424 -90105923 - L1PB1 LINE L1 -2715 4152 637 1020 168 10 5 chr4 112222427 112222624 -90105723 - L1PB1 LINE L1 -6663 200 3 738 261 14 14 chr4 112222945 112223152 -90105195 - MIR SINE MIR 0 262 56 394 257 51 69 chr4 112224396 112224614 -90103733 - MIR SINE MIR 0 262 53 221 329 13 36 chr4 112226946 112227071 -90101276 - MIR SINE MIR -62 146 40 186 320 0 40 chr4 112229946 112230021 -90098326 + L2 LINE L2 3234 3305 -8 323 366 104 0 chr4 112230059 112230223 -90098124 + MIR3 SINE MIR 14 194 -14 662 273 5 48 chr4 112230255 112230464 -90097883 + MER63A DNA MER1_type 1 200 -10 2300 45 0 0 chr4 112231651 112231916 -90096431 - AluY SINE Alu -12 299 35 535 327 145 32 chr4 112232145 112232518 -90095829 - L1MEd LINE L1 -5660 459 45 232 217 0 0 chr4 112232566 112232612 -90095735 - MIR3 SINE MIR -6 202 157 216 317 42 120 chr4 112232809 112232976 -90095371 - L2 LINE L2 -90 3182 3029 276 158 0 0 chr4 112233010 112233067 -90095280 + (TG)n Simple_repeat Simple_repeat 1 57 0 21 0 0 0 chr4 112233294 112233315 -90095032 + AT_rich Low_complexity Low_complexity 1 21 0 193 236 0 73 chr4 112233771 112233826 -90094521 + L2 LINE L2 3263 3313 0 347 133 93 0 chr4 112233855 112233930 -90094417 + L1M4 LINE L1 4913 4994 -1152 538 205 122 6 chr4 112233937 112234093 -90094254 + L1MB7 LINE L1 5992 6165 -19 1515 151 0 8 chr4 112234347 112234585 -90093762 - AluSg SINE Alu -11 299 64 246 230 210 0 chr4 112234594 112234694 -90093653 + MER104 DNA Tc2 58 178 -2 1089 226 38 133 chr4 112234723 112235227 -90093120 + MLT1J LTR MaLR 4 459 -52 184 214 0 0 chr4 112236992 112237034 -90091313 + L2 LINE L2 3264 3305 -8 379 330 46 17 chr4 112237314 112237487 -90090860 - MER5A DNA MER1_type -11 178 1 303 186 0 71 chr4 112238461 112238531 -90089816 - L2 LINE L2 -2 3270 3206 400 285 13 70 chr4 112239077 112239235 -90089112 + MER5B DNA MER1_type 29 177 -1 1310 246 99 17 chr4 112239380 112239977 -90088370 + L1M4 LINE L1 2342 2987 -3159 23 0 0 0 chr4 112241267 112241290 -90087057 + AT_rich Low_complexity Low_complexity 1 23 0 607 207 60 63 chr4 112242059 112242359 -90085988 - L1MC5 LINE L1 -58 7903 7605 359 212 50 0 chr4 112242432 112242531 -90085816 - L1MC5 LINE L1 -380 7581 7478 2678 290 77 21 chr4 112242548 112243614 -90084733 + L2 LINE L2 1822 2947 -367 381 256 43 60 chr4 112243618 112243735 -90084612 + L2 LINE L2 2662 2776 -538 522 253 58 53 chr4 112243764 112243989 -90084358 + L2 LINE L2 3086 3311 -2 425 169 0 0 chr4 112243988 112244053 -90084294 - L2 LINE L2 0 3272 3208 * 28 29 0 0 chr4 112244708 112244743 -90083604 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr4 112244846 112244867 -90083480 + (CA)n Simple_repeat Simple_repeat 2 22 0 317 346 54 24 chr4 112245347 112245552 -90082795 + L2 LINE L2 2255 2465 -849 902 143 0 0 chr4 112245562 112245695 -90082652 - FLAM_C SINE Alu 0 133 1 209 213 0 0 chr4 112245734 112245781 -90082566 + (TA)n Simple_repeat Simple_repeat 2 48 0 244 341 70 75 chr4 112246695 112247007 -90081340 + L2 LINE L2 2696 3048 -224 225 372 32 21 chr4 112247099 112247193 -90081154 + L2 LINE L2 3100 3194 -78 394 224 147 17 chr4 112247375 112247491 -90080856 - L2 LINE L2 -14 3299 3169 509 376 12 0 chr4 112247524 112247689 -90080658 + MER91A DNA MER1_type 2 168 -28 267 358 68 53 chr4 112247740 112248251 -90080096 - L2 LINE L2 -191 3081 2554 603 238 6 48 chr4 112248349 112248542 -90079805 + MIR SINE MIR 3 185 -65 13766 136 31 22 chr4 112248549 112250947 -90077400 + Tigger1 DNA MER2_type 1 2418 0 195 100 0 0 chr4 112250953 112250983 -90077364 + (TG)n Simple_repeat Simple_repeat 1 30 0 1810 173 64 3 chr4 112252913 112253255 -90075092 + MLT1A1 LTR MaLR 1 363 -2 3725 185 64 19 chr4 112255803 112257434 -90070913 - L1MB4 LINE L1 -6 6174 4477 16137 59 3 2 chr4 112257442 112260310 -90068037 - L1PA6 LINE L1 0 6154 3277 20612 108 10 11 chr4 112260312 112263534 -90064813 - L1PA6 LINE L1 -2919 3227 11 452 306 146 9 chr4 112263697 112263916 -90064431 - MIR SINE MIR -2 260 12 289 282 30 38 chr4 112263961 112264092 -90064255 - LTR33 LTR ERVL -50 471 342 302 265 205 49 chr4 112264186 112264371 -90063976 - LTR33 LTR ERVL -307 214 1 251 286 185 17 chr4 112265273 112265392 -90062955 + MIR SINE MIR 17 155 -107 12456 210 29 23 chr4 112265787 112266111 -90062236 + L1PA11 LINE L1 1616 1936 -4238 1447 211 13 20 chr4 112266111 112266409 -90061938 + AluJo SINE Alu 1 296 -16 12456 210 29 23 chr4 112266409 112268993 -90059354 + L1PA11 LINE L1 1936 4562 -1612 1872 148 172 8 chr4 112268993 112269359 -90058988 - MSTA LTR MaLR 0 428 3 12456 210 29 23 chr4 112269359 112270958 -90057389 + L1PA11 LINE L1 4562 6149 -25 4679 172 21 6 chr4 112270958 112271904 -90056443 + L1PA16 LINE L1 5204 6163 -3 273 73 0 0 chr4 112271915 112271956 -90056391 - MSTB LTR MaLR -29 399 359 23607 140 21 17 chr4 112271958 112274246 -90054101 + L1PA8A LINE L1 2 2278 -4168 180 0 0 0 chr4 112274246 112274266 -90054081 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 23607 140 21 17 chr4 112274266 112274568 -90053779 + L1PA8A LINE L1 2278 2577 -3869 360 0 0 0 chr4 112274568 112274608 -90053739 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 23607 140 21 17 chr4 112274608 112278338 -90050009 + L1PA8A LINE L1 2577 6417 -29 1774 150 32 56 chr4 112278363 112278737 -90049610 - MSTB LTR MaLR -61 365 1 7906 191 37 13 chr4 112278737 112280345 -90048002 - MSTB-int LTR MaLR 0 1651 5 1861 176 35 0 chr4 112280349 112280689 -90047658 - MSTB LTR MaLR 0 426 75 7142 100 155 71 chr4 112280692 112282247 -90046100 - pTR5 LTR ERV1 0 2438 753 496 85 12 37 chr4 112282248 112282330 -90046017 - MSTB LTR MaLR -342 84 5 2155 86 4 4 chr4 112282526 112282826 -90045521 + AluY SINE Alu 1 300 0 1262 129 10 0 chr4 112282942 112283144 -90045203 + L1PA14 LINE L1 5957 6160 -1 1104 126 32 11 chr4 112283163 112283353 -90044994 + L1MC1 LINE L1 6103 6296 -37 305 248 59 30 chr4 112283673 112283774 -90044573 + L1ME4a LINE L1 6013 6116 -5 343 350 119 40 chr4 112289891 112290492 -90037855 + L2 LINE L2 2607 3254 -18 23 33 0 0 chr4 112292311 112292341 -90036006 + AT_rich Low_complexity Low_complexity 1 30 0 26 64 0 0 chr4 112292383 112292430 -90035917 + AT_rich Low_complexity Low_complexity 1 47 0 503 219 48 0 chr4 112292821 112292926 -90035421 + MIR SINE MIR 61 170 -92 4984 150 11 20 chr4 112293021 112293852 -90034495 + L1PA12 LINE L1 20 842 -6739 16272 176 38 5 chr4 112293877 112298309 -90030038 + L1PA12 LINE L1 1240 5881 -1703 339 25 0 0 chr4 112298309 112298349 -90029998 + (CA)n Simple_repeat Simple_repeat 2 41 0 16272 176 38 5 chr4 112298349 112299137 -90029210 + L1PA12 LINE L1 5881 6641 -943 2514 164 92 4 chr4 112299137 112299605 -90028742 + LTR22 LTR ERVK 1 509 0 4860 111 48 5 chr4 112299605 112300359 -90027988 + HERVK22 LTR ERVK 1 786 -6051 * 20868 95 19 1 chr4 112300352 112303489 -90024858 + HERVK22 LTR ERVK 2314 6837 0 2239 183 83 23 chr4 112303489 112303969 -90024378 + LTR22 LTR ERVK 1 509 0 994 163 95 36 chr4 112304475 112304696 -90023651 + MER46A DNA MER2_type 3 236 0 3500 144 2 17 chr4 112305822 112306357 -90021990 + MER1A DNA MER1_type 1 527 0 24 32 0 0 chr4 112306657 112306688 -90021659 + AT_rich Low_complexity Low_complexity 1 31 0 2426 82 0 0 chr4 112307027 112307330 -90021017 + AluY SINE Alu 1 303 -8 2801 170 31 13 chr4 112308641 112309256 -90019091 + L1MA4 LINE L1 4821 5442 -743 * 8139 64 113 8 chr4 112309254 112310398 -90017949 + L1PA2 LINE L1 3 1270 -4876 25893 31 1 0 chr4 112310398 112314314 -90014033 + L1PA2 LINE L1 2213 6155 0 2410 127 20 18 chr4 112314315 112314716 -90013631 + L1MA4 LINE L1 5433 5834 -466 * 346 167 0 17 chr4 112314752 112314834 -90013513 + Alu SINE Alu 234 301 0 1110 143 35 25 chr4 112314834 112315037 -90013310 + L1MA4 LINE L1 5823 6027 -273 998 165 66 0 chr4 112315017 112315229 -90013118 + L1MA4 LINE L1 5953 6178 -122 * 214 246 49 16 chr4 112315237 112315298 -90013049 + MIR SINE MIR 190 252 -10 530 357 84 45 chr4 112315307 112315710 -90012637 + L2 LINE L2 2854 3272 0 203 304 59 59 chr4 112315823 112315942 -90012405 + L2 LINE L2 3177 3298 -15 183 80 0 0 chr4 112315942 112315967 -90012380 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 203 304 59 59 chr4 112315967 112315982 -90012365 + L2 LINE L2 3297 3311 -2 2344 96 0 3 chr4 112316226 112316529 -90011818 + AluSc SINE Alu 1 302 -7 21 0 0 0 chr4 112316595 112316616 -90011731 + AT_rich Low_complexity Low_complexity 1 21 0 261 146 0 0 chr4 112316942 112316990 -90011357 + (TG)n Simple_repeat Simple_repeat 2 49 0 192 200 0 0 chr4 112317248 112317288 -90011059 + (CA)n Simple_repeat Simple_repeat 2 41 0 395 316 150 36 chr4 112317700 112318253 -90010094 + L1MC4a LINE L1 4232 4847 -1299 2126 75 31 0 chr4 112318444 112318738 -90009609 - L1PA10 LINE L1 -11 6157 5855 337 274 111 0 chr4 112318893 112319010 -90009337 + L1MC4a LINE L1 5293 5422 -699 468 279 21 7 chr4 112319053 112319193 -90009154 + LTR33 LTR ERVL 5 146 -375 341 329 101 50 chr4 112319512 112319810 -90008537 + L1MC4a LINE L1 5562 5874 -1934 374 0 22 0 chr4 112319886 112319932 -90008415 + (CA)n Simple_repeat Simple_repeat 2 48 0 327 198 103 43 chr4 112319940 112320056 -90008291 + L1ME4a LINE L1 5999 6121 0 24 32 0 0 chr4 112320239 112320270 -90008077 + AT_rich Low_complexity Low_complexity 1 31 0 2139 138 43 0 chr4 112320275 112320624 -90007723 + THE1B LTR MaLR 1 364 0 2324 99 0 0 chr4 112320627 112320930 -90007417 + AluSp SINE Alu 1 303 -10 9388 120 72 11 chr4 112320934 112322424 -90005923 + THE1B-int LTR MaLR 1 1580 0 2155 117 70 6 chr4 112322424 112322766 -90005581 + THE1B LTR MaLR 1 364 0 2088 123 10 7 chr4 112323025 112323335 -90005012 + AluSq SINE Alu 1 311 -2 223 330 18 54 chr4 112324152 112324264 -90004083 + MIR SINE MIR 107 214 -48 28 48 0 0 chr4 112324507 112324549 -90003798 + AT_rich Low_complexity Low_complexity 1 42 0 763 268 44 0 chr4 112324560 112324743 -90003604 - MIR SINE MIR -58 204 14 279 327 103 0 chr4 112324973 112325080 -90003267 - L2 LINE L2 -8 3305 3188 204 309 0 0 chr4 112325419 112325487 -90002860 + T-rich Low_complexity Low_complexity 1 68 0 287 337 11 0 chr4 112325707 112325796 -90002551 - L2 LINE L2 -212 3060 2971 264 279 15 0 chr4 112326108 112326176 -90002171 + L2 LINE L2 3203 3271 -1 231 215 169 0 chr4 112327197 112327262 -90001085 + MIR3 SINE MIR 84 159 -49 725 235 130 25 chr4 112327273 112327588 -90000759 - MER7A DNA MER2_type 0 346 1 21 0 0 0 chr4 112328013 112328034 -90000313 + AT_rich Low_complexity Low_complexity 1 21 0 364 303 130 5 chr4 112328958 112329143 -89999204 + L2 LINE L2 3105 3312 -1 185 295 38 76 chr4 112329230 112329335 -89999012 + MER5A DNA MER1_type 56 156 -33 13541 141 24 11 chr4 112329861 112331243 -89997104 + Tigger1 DNA MER2_type 2 1423 -995 8402 64 4 7 chr4 112331243 112332318 -89996029 - MER11C LTR ERVK 0 1071 1 13541 141 24 11 chr4 112332318 112333144 -89995203 + Tigger1 DNA MER2_type 1423 2237 -181 5582 85 12 60 chr4 112333144 112334001 -89994346 - L1PA14 LINE L1 -14 6147 5332 674 11 43 11 chr4 112333999 112334092 -89994255 + L1P LINE L1 5267 5362 -799 * 643 244 42 6 chr4 112334092 112334260 -89994087 + Tigger1 DNA MER2_type 2245 2418 0 2118 113 0 0 chr4 112334415 112334699 -89993648 - AluSc SINE Alu -25 284 1 2227 95 14 0 chr4 112334699 112334995 -89993352 - AluSp SINE Alu -13 300 1 260 160 80 0 chr4 112335157 112335207 -89993140 - L2 LINE L2 -1 3312 3259 447 100 0 111 chr4 112335767 112335806 -89992541 + MADE1 DNA Mariner 1 26 -54 2238 101 3 0 chr4 112335806 112336104 -89992243 - AluSq SINE Alu -14 299 1 447 100 0 111 chr4 112336104 112336154 -89992193 + MADE1 DNA Mariner 26 80 0 478 277 122 44 chr4 112337839 112338160 -89990187 - L1M4 LINE L1 -1483 4663 4318 862 264 92 4 chr4 112338165 112338404 -89989943 + MIR SINE MIR 1 260 -2 377 272 191 21 chr4 112338440 112338723 -89989624 - L1M4 LINE L1 -1870 4276 3946 2731 141 4 20 chr4 112339401 112339904 -89988443 - L1MA2 LINE L1 0 6304 5810 20066 164 45 18 chr4 112339931 112342788 -89985559 - L1 LINE L1 -1488 6077 3299 1844 166 96 20 chr4 112342788 112343186 -89985161 + MSTA LTR MaLR 1 428 0 20066 164 45 18 chr4 112343186 112346235 -89982112 - L1 LINE L1 -4266 3299 7 298 389 98 26 chr4 112346301 112346607 -89981740 - L2 LINE L2 -367 2947 2620 1160 102 51 0 chr4 112346613 112346770 -89981577 + AluSx SINE Alu 1 165 -147 7588 203 38 15 chr4 112346891 112349578 -89978769 + L1MB3 LINE L1 3382 6182 -1 357 62 0 0 chr4 112350042 112350090 -89978257 + (TG)n Simple_repeat Simple_repeat 2 49 0 9588 120 40 41 chr4 112350244 112351825 -89976522 - THE1C-int LTR MaLR 0 1580 2 2064 150 50 11 chr4 112351826 112352187 -89976160 - THE1C LTR MaLR 0 375 1 27 0 0 0 chr4 112353326 112353353 -89974994 + AT_rich Low_complexity Low_complexity 1 27 0 471 334 84 23 chr4 112354027 112354255 -89974092 - MIR SINE MIR -20 242 4 24 0 0 0 chr4 112354793 112354817 -89973530 + AT_rich Low_complexity Low_complexity 1 24 0 772 105 57 8 chr4 112354817 112354941 -89973406 - L1PA16 LINE L1 -9 6157 6028 441 286 129 11 chr4 112354941 112355418 -89972929 + L1M4 LINE L1 3649 4196 -1950 202 250 17 17 chr4 112355420 112355480 -89972867 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 291 171 0 0 chr4 112355498 112355574 -89972773 + (TA)n Simple_repeat Simple_repeat 1 76 0 6528 235 65 9 chr4 112355606 112357231 -89971116 + L1M4 LINE L1 2837 4591 -1555 1294 191 0 0 chr4 112357231 112357466 -89970881 + MER46A DNA MER2_type 2 236 0 6528 235 65 9 chr4 112357466 112357808 -89970539 + L1M4 LINE L1 4591 4913 -1233 305 286 25 103 chr4 112357875 112357925 -89970422 - L3 LINE CR1 -2 1575 1523 3252 156 17 6 chr4 112357925 112358446 -89969901 - MER1A DNA MER1_type 0 527 1 305 286 25 103 chr4 112358446 112358598 -89969749 - L3 LINE CR1 -54 1523 1389 1858 162 0 3 chr4 112360176 112360478 -89967869 - AluSx SINE Alu -11 301 1 386 261 57 102 chr4 112361107 112361264 -89967083 - MIR SINE MIR -17 245 96 1383 282 153 22 chr4 112362434 112363147 -89965200 - HAL1 LINE L1 -599 1908 1103 1973 117 9 41 chr4 112363187 112363503 -89964844 + AluSx SINE Alu 1 306 -6 352 304 72 49 chr4 112363598 112363861 -89964486 - HAL1 LINE L1 -1597 910 642 629 283 78 5 chr4 112364022 112364241 -89964106 + MER69 DNA AcHobo 105 339 -2187 570 182 9 9 chr4 112364241 112364351 -89963996 + MER67A LTR ERV1 1 110 -433 5178 157 43 41 chr4 112364372 112365307 -89963040 - L1MA4 LINE L1 -4 6296 5349 658 237 35 46 chr4 112365307 112365480 -89962867 - FAM SINE Alu -2 173 3 5178 157 43 41 chr4 112365480 112366089 -89962258 - L1MA4 LINE L1 -951 5349 4743 202 241 101 0 chr4 112366757 112366836 -89961511 + MIR SINE MIR 59 145 -117 206 328 30 0 chr4 112368917 112368984 -89959363 + MIR3 SINE MIR 140 208 0 948 182 0 0 chr4 112369146 112369300 -89959047 - FRAM SINE Alu -23 153 1 302 256 26 26 chr4 112370370 112370487 -89957860 + HAL1 LINE L1 959 1075 -1432 285 176 0 0 chr4 112370498 112370572 -89957775 + CT-rich Low_complexity Low_complexity 1 74 0 1114 146 63 0 chr4 112370629 112370834 -89957513 + L1MA2 LINE L1 6086 6303 -1 480 312 49 46 chr4 112370857 112371203 -89957144 + HAL1 LINE L1 1223 1569 -938 615 281 171 3 chr4 112371508 112371871 -89956476 + L2 LINE L2 2744 3173 -140 714 219 67 16 chr4 112372385 112372604 -89955743 - L1ME1 LINE L1 0 6178 5953 507 215 241 0 chr4 112372588 112372825 -89955522 - L1MEc LINE L1 -4000 2396 2103 * 24 32 0 0 chr4 112372858 112372889 -89955458 + AT_rich Low_complexity Low_complexity 1 31 0 828 154 0 0 chr4 112374654 112374777 -89953570 + FRAM SINE Alu 35 157 -19 25 0 0 0 chr4 112374861 112374886 -89953461 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr4 112374971 112375006 -89953341 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr4 112375386 112375415 -89952932 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr4 112375462 112375503 -89952844 + AT_rich Low_complexity Low_complexity 1 41 0 1046 191 38 85 chr4 112376307 112376648 -89951699 - L1MC4 LINE L1 -8 8034 7710 235 244 157 43 chr4 112377667 112377782 -89950565 + MIR SINE MIR 135 262 0 314 267 52 30 chr4 112377833 112377968 -89950379 - L1ME LINE L1 -466 5655 5518 233 266 16 0 chr4 112380313 112380377 -89947970 + L1MEd LINE L1 6 70 -6049 1864 247 71 75 chr4 112380652 112381397 -89946950 + L1MCa LINE L1 18 759 -5667 369 299 97 14 chr4 112381448 112381655 -89946692 - L2 LINE L2 -149 3164 2941 1220 293 96 27 chr4 112381656 112382533 -89945814 + L1M4 LINE L1 3399 4335 -1811 29 28 0 0 chr4 112382561 112382597 -89945750 + AT_rich Low_complexity Low_complexity 1 36 0 277 196 0 0 chr4 112382666 112382722 -89945625 + L1ME3 LINE L1 6096 6151 -11 2992 174 92 32 chr4 112383313 112384095 -89944252 + Looper DNA T2_type 717 1545 -13 337 336 86 37 chr4 112384704 112384948 -89943399 - MIR SINE MIR 0 262 7 3012 201 179 8 chr4 112384951 112385356 -89942991 + Charlie1a DNA MER1_type 7 341 -2420 2782 13 0 0 chr4 112385356 112385669 -89942678 - AluYb8 SINE Alu -5 313 1 3012 201 179 8 chr4 112385669 112386066 -89942281 + Charlie1a DNA MER1_type 341 669 -2092 2023 94 21 70 chr4 112386066 112386394 -89941953 + AluSx SINE Alu 1 312 0 3012 201 179 8 chr4 112386394 112386770 -89941577 + Charlie1a DNA MER1_type 669 1454 -1 472 311 27 0 chr4 112388589 112388737 -89939610 + MER20B DNA MER1_type 53 204 -579 2265 223 142 45 chr4 112388759 112389628 -89938719 + LTR28 LTR ERV1 1 1524 -193 254 273 0 0 chr4 112389909 112389975 -89938372 - L1MC4 LINE L1 -59 7983 7918 382 319 76 28 chr4 112390120 112390371 -89937976 - L1M4 LINE L1 -1127 5019 4757 1863 254 48 17 chr4 112390648 112391108 -89937239 + LTR40a LTR ERVL 29 502 -17 481 209 191 0 chr4 112391569 112391674 -89936673 - FLAM_C SINE Alu -16 127 3 22 94 0 0 chr4 112391751 112391815 -89936532 + AT_rich Low_complexity Low_complexity 1 64 0 25 75 0 0 chr4 112391942 112391995 -89936352 + AT_rich Low_complexity Low_complexity 1 53 0 230 245 0 0 chr4 112392154 112392203 -89936144 - MER112 DNA MER1_type -187 73 25 239 281 56 34 chr4 112392343 112392521 -89935826 - L1ME4a LINE L1 -88 6033 5852 416 75 0 0 chr4 112392757 112392824 -89935523 - L1MA7 LINE L1 -2 6289 6223 42248 36 22 1 chr4 112393954 112399834 -89928513 + L1PA3 LINE L1 1 6006 -149 2043 222 69 0 chr4 112399830 112400294 -89928053 - L1M1 LINE L1 -6264 1301 806 * 6805 140 10 8 chr4 112402077 112403752 -89924595 + L1MA2 LINE L1 4625 6304 0 22 35 0 0 chr4 112404514 112404543 -89923804 + AT_rich Low_complexity Low_complexity 1 29 0 1566 193 0 7 chr4 112405671 112405961 -89922386 - AluJb SINE Alu -24 288 1 2339 82 3 0 chr4 112406084 112406390 -89921957 + AluSg SINE Alu 1 307 -3 22 70 0 0 chr4 112407553 112407596 -89920751 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr4 112407708 112407737 -89920610 + AT_rich Low_complexity Low_complexity 1 29 0 214 308 92 0 chr4 112408256 112408321 -89920026 + L2 LINE L2 3208 3278 -35 297 327 28 0 chr4 112408338 112408445 -89919902 + MER94 DNA DNA 25 134 0 286 109 0 0 chr4 112408625 112408671 -89919676 + MADE1 DNA Mariner 1 46 -34 1335 112 34 0 chr4 112409865 112410070 -89918277 - L1PA15 LINE L1 -5 6160 5949 23 33 0 0 chr4 112410212 112410242 -89918105 + AT_rich Low_complexity Low_complexity 1 30 0 217 279 41 0 chr4 112410420 112410542 -89917805 + (TA)n Simple_repeat Simple_repeat 2 128 0 1201 84 0 0 chr4 112410557 112410711 -89917636 + AluSq SINE Alu 1 154 -159 2515 96 6 6 chr4 112411377 112411732 -89916615 - THE1A LTR MaLR 0 355 1 705 133 0 26 chr4 112412023 112412136 -89916211 + FLAM_C SINE Alu 20 129 -14 210 88 18 53 chr4 112412401 112412458 -89915889 + (TTTTTA)n Simple_repeat Simple_repeat 2 56 0 1257 33 0 0 chr4 112412461 112412612 -89915735 - L1PA2 LINE L1 -3 6152 6002 21 0 0 0 chr4 112413698 112413719 -89914628 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr4 112413925 112413951 -89914396 + AT_rich Low_complexity Low_complexity 1 26 0 312 256 263 19 chr4 112413955 112414111 -89914236 - MIR SINE MIR -61 201 8 7800 179 57 13 chr4 112415010 112416599 -89911748 + MER52A LTR ERV1 1 1755 0 499 279 109 53 chr4 112416613 112417391 -89910956 + L1ME LINE L1 4457 5278 -868 1301 202 63 23 chr4 112417394 112417696 -89910651 + MER68 LTR ERV1 1 314 -248 211 214 0 0 chr4 112417717 112417759 -89910588 + A-rich Low_complexity Low_complexity 1 42 0 732 263 39 55 chr4 112417760 112418015 -89910332 + MER68 LTR ERV1 305 555 -7 1099 277 59 17 chr4 112418016 112418492 -89909855 + L1ME LINE L1 5304 5799 -371 849 291 93 33 chr4 112418894 112419293 -89909054 + L1MC4a LINE L1 5494 5916 -1892 322 331 16 16 chr4 112420561 112420682 -89907665 - MIR SINE MIR -76 186 66 23 33 0 0 chr4 112422020 112422050 -89906297 + AT_rich Low_complexity Low_complexity 1 30 0 1324 205 5 0 chr4 112422295 112422510 -89905837 + MER8 DNA MER2_type 23 238 -1 1288 187 46 60 chr4 112422905 112423274 -89905073 - MLT1A1 LTR MaLR -1 364 1 23 0 0 0 chr4 112424193 112424216 -89904131 + AT_rich Low_complexity Low_complexity 1 23 0 777 160 0 0 chr4 112424824 112424949 -89903398 + FLAM_C SINE Alu 1 125 -18 437 202 21 0 chr4 112425003 112425097 -89903250 + L1MCa LINE L1 523 618 -5808 378 162 121 50 chr4 112425096 112425195 -89903152 - L1MCa LINE L1 -5673 753 648 * 25 90 0 0 chr4 112425282 112425349 -89902998 + AT_rich Low_complexity Low_complexity 1 67 0 277 176 0 20 chr4 112425495 112425546 -89902801 - L2 LINE L2 -3 3269 3220 495 192 205 39 chr4 112426208 112426364 -89901983 + L1MCa LINE L1 573 754 -5672 * 2864 207 53 14 chr4 112426317 112426960 -89901387 - L1MCa LINE L1 -5755 671 4 1696 164 17 7 chr4 112427822 112428115 -89900232 + AluJb SINE Alu 1 296 -16 3186 26 3 5 chr4 112428716 112429097 -89899250 + L1PA3 LINE L1 5776 6155 0 587 315 91 35 chr4 112429501 112430648 -89897699 - L1MC/D LINE L1 -806 5409 4447 23 0 0 0 chr4 112430687 112430710 -89897637 + AT_rich Low_complexity Low_complexity 1 23 0 673 248 7 0 chr4 112430787 112430932 -89897415 + MER58B DNA MER1_type 196 341 0 458 105 0 40 chr4 112431563 112431639 -89896708 - AluJb SINE Alu -17 295 223 1186 192 8 29 chr4 112431675 112431915 -89896432 - AluJb SINE Alu -73 239 5 32 75 0 0 chr4 112432839 112432906 -89895441 + AT_rich Low_complexity Low_complexity 1 67 0 189 343 136 14 chr4 112434603 112434743 -89893604 + L2 LINE L2 2605 2761 -553 768 210 6 24 chr4 112435518 112435685 -89892662 - MLT1E2 LTR MaLR -169 457 294 770 167 122 0 chr4 112435686 112435842 -89892505 + THE1C LTR MaLR 199 373 -2 12119 158 27 9 chr4 112435846 112439200 -89889147 + L1MA3 LINE L1 2891 6304 -1 740 269 60 57 chr4 112439574 112439927 -89888420 - L1MC/D LINE L1 -4254 2142 1785 2156 126 0 3 chr4 112439927 112440236 -89888111 - AluSx SINE Alu -4 308 1 740 269 60 57 chr4 112440236 112440394 -89887953 - L1MC/D LINE L1 -4611 1785 1629 4065 235 49 40 chr4 112440651 112441598 -89886749 - L1ME2 LINE L1 -10 6154 5217 231 0 77 0 chr4 112441598 112441637 -89886710 + T-rich Low_complexity Low_complexity 5 46 0 1500 113 79 23 chr4 112441638 112441903 -89886444 - AluSq SINE Alu -33 280 1 4065 235 49 40 chr4 112441903 112441962 -89886385 - L1ME2 LINE L1 -947 5217 5160 749 185 0 0 chr4 112441962 112442081 -89886266 - FLAM_A SINE Alu -14 119 1 4065 235 49 40 chr4 112442081 112443372 -89884975 - L1ME2 LINE L1 -1004 5160 3846 1343 208 60 0 chr4 112443377 112443661 -89884686 - AluJo SINE Alu 0 302 2 3200 203 68 11 chr4 112443671 112444406 -89883941 - L1MB5 LINE L1 0 7593 6817 437 206 31 144 chr4 112444407 112444601 -89883746 + MER21B LTR ERV1 23 194 -669 1205 257 82 17 chr4 112444605 112445022 -89883325 - MLT1C LTR MaLR -2 465 22 2314 85 0 13 chr4 112445717 112446023 -89882324 + AluY SINE Alu 1 302 -9 291 325 198 5 chr4 112446201 112446413 -89881934 - MIR SINE MIR -6 256 4 723 227 80 0 chr4 112446465 112446615 -89881732 + MER5A DNA MER1_type 1 162 -27 2261 106 0 0 chr4 112446732 112447034 -89881313 - AluSx SINE Alu -2 310 9 24 0 0 0 chr4 112447161 112447185 -89881162 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr4 112447921 112447950 -89880397 + AT_rich Low_complexity Low_complexity 1 29 0 195 274 63 32 chr4 112448009 112448104 -89880243 + L3 LINE CR1 1227 1324 -253 255 375 22 22 chr4 112449599 112449735 -89878612 + L2 LINE L2 2201 2336 -978 250 303 34 11 chr4 112450774 112450863 -89877484 - PABL_B-int LTR ERV1 -3836 3286 3196 10030 197 56 31 chr4 112452306 112454951 -89873396 - L1MB5 LINE L1 -1421 6144 3410 * 11356 75 8 0 chr4 112454940 112457208 -89871139 - L1PA7 LINE L1 -5 6149 3864 389 320 102 0 chr4 112457739 112457936 -89870411 + L2 LINE L2 2664 2880 -434 242 329 49 0 chr4 112458086 112458168 -89870179 + L2 LINE L2 3227 3312 -1 477 239 99 28 chr4 112458488 112458630 -89869717 + L1MCa LINE L1 420 571 -5855 23 33 0 0 chr4 112459184 112459214 -89869133 + AT_rich Low_complexity Low_complexity 1 30 0 1102 145 125 16 chr4 112459878 112460126 -89868221 - L1MB1 LINE L1 -26 6163 5889 6098 212 10 17 chr4 112460270 112461957 -89866390 - L1PA15 LINE L1 0 6165 4492 2217 124 3 0 chr4 112461957 112462263 -89866084 - AluSg SINE Alu -3 307 1 6098 212 10 17 chr4 112462263 112462784 -89865563 - L1PA15 LINE L1 -1673 4492 3969 614 106 0 0 chr4 112463830 112463915 -89864432 + Alu SINE Alu 221 305 -7 211 265 253 25 chr4 112464325 112464487 -89863860 + L2 LINE L2 2778 2976 -338 1640 99 0 0 chr4 112465286 112465508 -89862839 - AluY SINE Alu -8 303 82 1707 163 82 6 chr4 112465546 112465865 -89862482 - MER2 DNA MER2_type -1 343 1 220 211 0 0 chr4 112468330 112468382 -89859965 + A-rich Low_complexity Low_complexity 6 57 0 1376 104 25 2 chr4 112469446 112469761 -89858586 + MER57A LTR ERV1 8 403 0 381 22 0 0 chr4 112470032 112470078 -89858269 + (TG)n Simple_repeat Simple_repeat 1 46 0 1648 166 97 85 chr4 112470080 112470502 -89857845 + MLT2B2 LTR ERVL 89 515 0 206 213 0 13 chr4 112470721 112470796 -89857551 + (TA)n Simple_repeat Simple_repeat 2 75 0 25 0 0 0 chr4 112471298 112471323 -89857024 + AT_rich Low_complexity Low_complexity 1 25 0 1836 240 39 102 chr4 112471506 112471971 -89856376 + L1MEc LINE L1 30 523 -5873 234 0 0 0 chr4 112471971 112471997 -89856350 + (TA)n Simple_repeat Simple_repeat 1 26 0 1836 240 39 102 chr4 112471997 112472100 -89856247 + L1MEc LINE L1 523 543 -5853 243 0 0 0 chr4 112472100 112472127 -89856220 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1836 240 39 102 chr4 112472127 112472299 -89856048 + L1MEc LINE L1 543 724 -5672 426 276 48 52 chr4 112472675 112472885 -89855462 + MIR SINE MIR 12 220 -42 192 184 0 0 chr4 112473283 112473332 -89855015 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 435 261 54 0 chr4 112473544 112473655 -89854692 - L2 LINE L2 0 3313 3197 3477 264 105 28 chr4 112473683 112474822 -89853525 + L2 LINE L2 1827 3084 -229 1767 176 3 0 chr4 112474822 112475112 -89853235 + AluJo SINE Alu 1 291 -21 3477 264 105 28 chr4 112475112 112475361 -89852986 + L2 LINE L2 3084 3313 0 30 0 0 0 chr4 112475600 112475630 -89852717 + AT_rich Low_complexity Low_complexity 1 30 0 188 183 300 0 chr4 112476572 112476632 -89851715 + MIR SINE MIR 161 238 -24 1356 205 36 51 chr4 112476808 112477199 -89851148 + Looper DNA T2_type 263 647 -911 205 297 58 97 chr4 112577510 112577665 -89750682 + L3 LINE CR1 1392 1540 -37 2248 88 0 0 chr4 112577822 112578107 -89750240 + AluY SINE Alu 1 285 -26 962 209 0 0 chr4 112578249 112578426 -89749921 - FRAM SINE Alu -5 171 1 316 138 31 0 chr4 112578598 112578663 -89749684 - L1MA9 LINE L1 -33 6279 6213 2219 115 3 0 chr4 112579551 112579855 -89748492 + AluSx SINE Alu 1 305 -7 241 266 70 95 chr4 112580204 112580362 -89747985 + MIR SINE MIR 62 215 -47 243 243 0 0 chr4 112580893 112580963 -89747384 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 978 260 28 12 chr4 112580968 112581222 -89747125 + MIR SINE MIR 5 262 0 1029 285 100 13 chr4 112581792 112582274 -89746073 - L2 LINE L2 -10 3303 2779 656 262 109 11 chr4 112582511 112582877 -89745470 + L1M4 LINE L1 2187 2588 -3558 513 245 68 31 chr4 112582987 112583342 -89745005 + L1M4 LINE L1 2795 3162 -2984 2367 81 0 3 chr4 112583400 112583698 -89744649 - AluSg SINE Alu -13 297 1 399 292 37 85 chr4 112583719 112584260 -89744087 + L1MEd LINE L1 701 1215 -4904 1432 207 0 0 chr4 112584278 112584524 -89743823 + L1PB3 LINE L1 66 311 -6541 1126 113 0 0 chr4 112584609 112584760 -89743587 + AluSq SINE Alu 3 153 -160 610 167 0 0 chr4 112584760 112584887 -89743460 + AluSg/x SINE Alu 190 316 0 8102 189 23 7 chr4 112584887 112586538 -89741809 + L1P LINE L1 2675 4352 -1794 13021 191 51 24 chr4 112586546 112588005 -89740342 + L1PB3 LINE L1 2671 4089 -2781 219 36 0 0 chr4 112588005 112588033 -89740314 + (CAA)n Simple_repeat Simple_repeat 1 28 0 13021 191 51 24 chr4 112588033 112588205 -89740142 + L1PB3 LINE L1 4089 4255 -2615 2358 29 0 0 chr4 112588205 112588481 -89739866 + L1PA3 LINE L1 5880 6155 0 13021 191 51 24 chr4 112588481 112590544 -89737803 + L1PB3 LINE L1 4255 6471 -399 330 87 0 0 chr4 112590544 112590590 -89737757 + (TG)n Simple_repeat Simple_repeat 2 47 0 13021 191 51 24 chr4 112590590 112590714 -89737633 + L1PB3 LINE L1 6471 6590 -280 749 175 0 0 chr4 112590717 112590854 -89737493 + L1PB3 LINE L1 6733 6869 -1 2470 193 34 29 chr4 112590865 112591011 -89737336 + L1MB3 LINE L1 3960 4104 -2079 2106 119 3 16 chr4 112591011 112591314 -89737033 - AluSg SINE Alu -9 301 3 2470 193 34 29 chr4 112591314 112593213 -89735134 + L1MB3 LINE L1 4104 6182 -1 2410 77 3 6 chr4 112593959 112594271 -89734076 + AluY SINE Alu 1 311 0 2067 143 11 85 chr4 112594376 112594806 -89733541 - L1MB3 LINE L1 -2 6181 5784 2294 106 23 52 chr4 112594806 112595192 -89733155 + THE1C LTR MaLR 1 375 0 2067 143 11 85 chr4 112595192 112595209 -89733138 - L1MB3 LINE L1 -399 5784 5767 297 326 135 9 chr4 112595304 112595519 -89732828 - MIR SINE MIR 0 262 21 188 320 90 10 chr4 112595603 112595703 -89732644 + MIR SINE MIR 50 157 -105 702 224 38 11 chr4 112595760 112595943 -89732404 - MIR SINE MIR -62 200 13 274 267 47 12 chr4 112595958 112596044 -89732303 + MIR SINE MIR 174 262 0 282 150 0 25 chr4 112596740 112596794 -89731553 - THE1B LTR MaLR 0 364 305 3110 14 0 0 chr4 112597048 112597401 -89730946 - L1P1 LINE L1 -470 5685 5333 3364 30 0 2 chr4 112597401 112597801 -89730546 + L1PA2 LINE L1 5756 6155 0 26 0 0 0 chr4 112597814 112597840 -89730507 + AT_rich Low_complexity Low_complexity 1 26 0 3155 116 2 29 chr4 112598348 112598541 -89729806 + L1MA2 LINE L1 5793 5990 -314 2195 83 35 7 chr4 112598541 112598829 -89729518 + AluSp SINE Alu 4 299 -14 3155 116 2 29 chr4 112598829 112599161 -89729186 + L1MA2 LINE L1 5990 6304 0 389 340 114 40 chr4 112599225 112599845 -89728502 - L2 LINE L2 -202 3070 2348 1038 123 0 7 chr4 112600659 112600813 -89727534 + MER4E LTR ERV1 614 766 0 1934 122 85 0 chr4 112600919 112601248 -89727099 - L1MB3 LINE L1 -2 6181 5825 418 277 56 66 chr4 112601934 112602147 -89726200 + MIR SINE MIR 9 219 -43 844 316 61 9 chr4 112602498 112602824 -89725523 + LTR16A LTR ERVL 105 447 -3 254 274 48 0 chr4 112602917 112602979 -89725368 + L2 LINE L2 3204 3268 -4 26 0 0 0 chr4 112603034 112603060 -89725287 + AT_rich Low_complexity Low_complexity 1 26 0 209 299 221 19 chr4 112603204 112603358 -89724989 - L2 LINE L2 -6 3307 3123 1592 244 17 75 chr4 112603364 112603939 -89724408 + MER34 LTR ERV1 1 542 0 203 333 108 0 chr4 112603941 112604034 -89724313 - L2 LINE L2 -243 3070 2968 1236 14 0 0 chr4 112604039 112604181 -89724166 + (CTATT)n Simple_repeat Simple_repeat 4 145 0 1521 164 36 0 chr4 112604203 112604329 -89724018 - AluSx SINE Alu -53 259 139 216 0 0 0 chr4 112604329 112604353 -89723994 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1521 164 36 0 chr4 112604353 112604476 -89723871 - AluSx SINE Alu -173 139 1 1469 295 70 21 chr4 112605843 112606355 -89721992 - MER115 DNA AcHobo -17 676 140 244 231 22 22 chr4 112606625 112606716 -89721631 + CT-rich Low_complexity Low_complexity 2 92 0 1520 195 10 75 chr4 112607735 112608124 -89720223 - MLT1A1 LTR MaLR -1 364 1 257 194 0 14 chr4 112608303 112608375 -89719972 + (TA)n Simple_repeat Simple_repeat 1 71 0 259 264 209 11 chr4 112608838 112608929 -89719418 - L2 LINE L2 0 3313 3205 207 405 14 40 chr4 112609158 112609306 -89719041 + L2 LINE L2 3079 3222 -50 560 332 25 5 chr4 112610797 112610996 -89717351 - MIR SINE MIR -31 231 29 2415 145 0 0 chr4 112610999 112611378 -89716969 + L1PA16 LINE L1 5779 6157 -9 202 106 43 0 chr4 112611566 112611613 -89716734 + (TTTAA)n Simple_repeat Simple_repeat 3 51 0 210 244 0 0 chr4 112614399 112614444 -89713903 + (TATG)n Simple_repeat Simple_repeat 4 48 0 448 278 0 0 chr4 112615067 112615157 -89713190 - Tigger3(Golem) DNA MER2_type 0 3029 2940 1918 186 30 0 chr4 112615183 112615517 -89712830 - MER7A DNA MER2_type -3 343 2 229 174 61 174 chr4 112615672 112615770 -89712577 + MLT1L LTR MaLR 4 90 -525 338 331 39 31 chr4 112616532 112616662 -89711685 + MIR SINE MIR 19 149 -59 1169 293 15 27 chr4 112616668 112617071 -89711276 + MLT1I LTR MaLR 9 406 -3 1305 330 93 17 chr4 112617206 112617991 -89710356 - L2 LINE L2 -635 2679 1835 3272 113 0 6 chr4 112618068 112618548 -89709799 - L1PA15 LINE L1 -15 6150 5674 460 312 38 6 chr4 112618607 112618764 -89709583 - MIR SINE MIR -96 166 5 258 259 35 59 chr4 112618730 112618815 -89709532 + L2 LINE L2 3173 3255 -17 * 198 333 12 12 chr4 112618869 112618950 -89709397 + MER5A DNA MER1_type 109 189 0 266 367 14 27 chr4 112618957 112619104 -89709243 + L2 LINE L2 2636 2780 -534 764 266 169 35 chr4 112619154 112619709 -89708638 - MLT1G LTR MaLR 0 590 6 1976 96 4 11 chr4 112619715 112619996 -89708351 + MLT2A1 LTR ERVL 1 279 -165 402 73 0 0 chr4 112620014 112620069 -89708278 + MLT2A1 LTR ERVL 399 453 0 21 0 0 0 chr4 112621302 112621323 -89707024 + AT_rich Low_complexity Low_complexity 1 21 0 186 243 122 40 chr4 112621851 112621925 -89706422 + MIR3 SINE MIR 87 166 -42 24 0 0 0 chr4 112622271 112622295 -89706052 + AT_rich Low_complexity Low_complexity 1 24 0 527 314 75 18 chr4 112622751 112622977 -89705370 - MIR SINE MIR 0 262 24 7946 114 12 21 chr4 112625136 112626343 -89702004 + HSMAR2 DNA Mariner 1 1195 -107 519 283 24 63 chr4 112626508 112626713 -89701634 - L1MEd LINE L1 -5498 621 425 302 267 238 0 chr4 112626714 112626819 -89701528 - L2 LINE L2 0 3313 3184 712 299 63 10 chr4 112626857 112627158 -89701189 - L1MEd LINE L1 -5791 328 12 530 327 73 32 chr4 112627182 112627552 -89700795 + L2 LINE L2 2872 3256 -57 245 271 35 35 chr4 112627649 112627793 -89700554 + L1MC5 LINE L1 7324 7467 -494 467 294 93 34 chr4 112628199 112628291 -89700056 - MIR SINE MIR -2 260 175 2918 100 24 2 chr4 112628291 112628710 -89699637 - MSTA LTR MaLR 0 428 1 467 294 93 34 chr4 112628710 112628821 -89699526 - MIR SINE MIR -87 175 45 206 175 18 88 chr4 112628935 112628992 -89699355 + MIR SINE MIR 210 262 0 263 275 37 18 chr4 112629865 112629974 -89698373 - L1ME LINE L1 -341 5780 5670 190 371 21 50 chr4 112630235 112630375 -89697972 + L2 LINE L2 2903 3038 -234 210 37 0 0 chr4 112630411 112630438 -89697909 + (T)n Simple_repeat Simple_repeat 1 27 0 2315 91 0 7 chr4 112630824 112631132 -89697215 - AluY SINE Alu -1 310 5 306 273 25 96 chr4 112631607 112631805 -89696542 + L1ME LINE L1 5191 5374 -772 244 267 0 47 chr4 112632022 112632108 -89696239 + L1ME LINE L1 5586 5667 -454 2219 87 3 7 chr4 112632249 112632547 -89695800 + L1PA10 LINE L1 5866 6162 -6 827 141 15 7 chr4 112633170 112633305 -89695042 + AluJo SINE Alu 1 136 -176 681 201 182 81 chr4 112633510 112634032 -89694315 + L1MC5 LINE L1 7191 7765 -196 2076 119 10 0 chr4 112634190 112634492 -89693855 - AluSq SINE Alu -8 305 1 4951 268 103 56 chr4 112634568 112635768 -89692579 + L2 LINE L2 881 2023 -1290 2456 64 0 0 chr4 112635768 112636066 -89692281 - AluY SINE Alu -13 298 1 4951 268 103 56 chr4 112636066 112637185 -89691162 + L2 LINE L2 2023 3312 -1 22 80 0 0 chr4 112637613 112637663 -89690684 + AT_rich Low_complexity Low_complexity 1 50 0 207 100 75 0 chr4 112637741 112637781 -89690566 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 424 269 123 35 chr4 112639914 112640465 -89687882 + L1ME4a LINE L1 3354 3953 -2193 32 0 0 0 chr4 112640465 112640497 -89687850 + AT_rich Low_complexity Low_complexity 1 32 0 1359 62 0 0 chr4 112640497 112640659 -89687688 - AluY SINE Alu -25 286 125 235 299 26 26 chr4 112640676 112640793 -89687554 + L1ME4a LINE L1 3964 4080 -2066 856 205 28 71 chr4 112640962 112641107 -89687240 + LTR37B LTR ERV1 198 348 -120 387 0 0 0 chr4 112641107 112641150 -89687197 + (TG)n Simple_repeat Simple_repeat 2 44 0 1824 153 0 14 chr4 112641150 112641438 -89686909 - AluJb SINE Alu -28 284 1 856 205 28 71 chr4 112641438 112641574 -89686773 + LTR37B LTR ERV1 346 468 0 799 313 50 20 chr4 112641575 112642175 -89686172 + L1ME4a LINE L1 4076 4693 -1453 302 191 59 0 chr4 112642217 112642285 -89686062 + L1ME4a LINE L1 4761 4832 -1314 302 156 0 0 chr4 112642359 112642431 -89685916 + Alu SINE Alu 240 311 0 287 286 30 2 chr4 112642480 112642637 -89685710 + L1ME4a LINE L1 4959 5117 -1029 588 297 42 93 chr4 112642818 112643481 -89684866 + L1ME3A LINE L1 5320 5948 -222 1903 155 31 20 chr4 112643715 112644070 -89684277 + L1PA16 LINE L1 5803 6161 -5 241 265 102 10 chr4 112644383 112644481 -89683866 - MLT1K LTR MaLR -47 541 435 1063 211 5 5 chr4 112645064 112645282 -89683065 - MER2 DNA MER2_type -127 218 1 2210 79 7 0 chr4 112645357 112645664 -89682683 + AluSx SINE Alu 2 310 0 1285 66 36 0 chr4 112645666 112645833 -89682514 + AluSp SINE Alu 133 305 -8 367 281 121 57 chr4 112646178 112646684 -89681663 + L1ME4a LINE L1 5317 5818 -303 378 276 107 31 chr4 112646692 112646917 -89681430 + L1ME4a LINE L1 5874 6115 -6 37 39 0 0 chr4 112646944 112646995 -89681352 + AT_rich Low_complexity Low_complexity 1 51 0 3163 148 15 57 chr4 112647715 112648264 -89680083 - MER1A DNA MER1_type -3 526 1 1833 157 0 41 chr4 112648674 112648809 -89679538 + AluJo SINE Alu 6 145 -167 2077 114 0 28 chr4 112648809 112649098 -89679249 + AluSx SINE Alu 1 281 -31 339 25 0 0 chr4 112649098 112649138 -89679209 + (CA)n Simple_repeat Simple_repeat 1 40 0 1833 157 0 41 chr4 112649138 112649320 -89679027 + AluJo SINE Alu 143 311 -1 14001 183 22 35 chr4 112649457 112653919 -89674428 + L1PB1 LINE L1 1981 6483 -370 459 0 0 0 chr4 112653919 112653970 -89674377 + (TA)n Simple_repeat Simple_repeat 2 52 0 14001 183 22 35 chr4 112653970 112654336 -89674011 + L1PB1 LINE L1 6483 6852 -1 692 309 51 56 chr4 112654480 112654910 -89673437 + L2 LINE L2 2281 2708 -606 1550 195 72 62 chr4 112655026 112655307 -89673040 - MER89 LTR ERV1 0 559 282 1389 161 17 67 chr4 112655307 112655606 -89672741 + AluJb SINE Alu 1 284 -28 1550 195 72 62 chr4 112655606 112655777 -89672570 - MER89 LTR ERV1 -277 282 3 678 225 0 0 chr4 112656122 112656295 -89672052 + C-rich Low_complexity Low_complexity 5 177 0 2169 125 16 0 chr4 112656536 112656841 -89671506 + AluSx SINE Alu 1 310 -2 183 42 0 0 chr4 112657339 112657363 -89670984 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr4 112657648 112657676 -89670671 + AT_rich Low_complexity Low_complexity 1 28 0 1334 178 54 7 chr4 112658282 112658580 -89669767 + MER33 DNA MER1_type 2 313 -11 1284 288 95 40 chr4 112658652 112659496 -89668851 - L2 LINE L2 -28 3285 2379 215 349 80 48 chr4 112659561 112659810 -89668537 - L2 LINE L2 -191 3081 2825 570 256 41 12 chr4 112660293 112660465 -89667882 + LTR33 LTR ERVL 326 502 -19 524 264 52 129 chr4 112660591 112660917 -89667430 - MLT1J LTR MaLR -210 301 1 185 284 0 75 chr4 112662296 112662363 -89665984 - L2 LINE L2 -4 3309 3248 2375 84 3 0 chr4 112663232 112663530 -89664817 - AluSg SINE Alu -11 299 1 909 261 17 1 chr4 112663670 112663958 -89664389 - L1ME LINE L1 -565 5668 5375 314 200 46 23 chr4 112663973 112664148 -89664199 + (TAA)n Simple_repeat Simple_repeat 2 180 0 340 273 50 0 chr4 112664161 112664282 -89664065 - L1ME LINE L1 -851 5364 5238 638 57 0 11 chr4 112664289 112664377 -89663970 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 3856 97 17 20 chr4 112664378 112664965 -89663382 + SVA Other Other 58 642 -744 732 33 0 0 chr4 112665000 112665092 -89663255 + HERVK LTR ERVK 7152 7243 0 2202 42 19 0 chr4 112665092 112665352 -89662995 + LTR5 LTR ERVK 1 265 -704 3546 16 0 0 chr4 112665352 112666013 -89662334 - L1PA2 LINE L1 -480 5675 5015 4460 12 0 0 chr4 112666013 112666555 -89661792 + L1PA2 LINE L1 5650 6405 -8 1607 62 0 14 chr4 112666555 112666763 -89661584 + SVA Other Other 1182 1386 0 2929 244 71 2 chr4 112666780 112667121 -89661226 - L1ME LINE L1 -984 5231 4915 180 0 0 0 chr4 112667121 112667141 -89661206 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 2929 244 71 2 chr4 112667141 112667828 -89660519 - L1ME LINE L1 -1300 4915 4132 523 289 49 16 chr4 112667876 112668122 -89660225 - L1ME LINE L1 -6094 302 49 746 135 47 94 chr4 112668374 112668544 -89659803 + MER20B DNA MER1_type 7 168 -51 248 318 55 27 chr4 112668734 112668844 -89659503 + L2 LINE L2 3155 3267 -5 1013 337 33 6 chr4 112669054 112669535 -89658812 + MLT1J LTR MaLR 5 498 -13 263 244 21 16 chr4 112669939 112670058 -89658289 - MLT1H LTR MaLR -272 162 50 486 49 0 0 chr4 112670578 112670639 -89657708 + (TA)n Simple_repeat Simple_repeat 2 62 0 2380 85 13 3 chr4 112670639 112670945 -89657402 - AluSg SINE Alu 0 310 2 8166 149 2 5 chr4 112671261 112673512 -89654835 + L1PA11 LINE L1 3928 6174 0 1901 179 0 3 chr4 112673686 112673998 -89654349 + AluJb SINE Alu 1 311 -1 2245 166 0 5 chr4 112675524 112675891 -89652456 - MLT1A1 LTR MaLR 0 365 1 1045 71 7 0 chr4 112676177 112676317 -89652030 + LTR17 LTR ERV1 184 324 -456 443 35 17 0 chr4 112676381 112676439 -89651908 - LTR17 LTR ERV1 -721 59 1 2238 62 3 0 chr4 112676439 112676730 -89651617 - HERV17 LTR ERV1 0 8626 8335 304 26 0 0 chr4 112676720 112676759 -89651588 - HERV17 LTR ERV1 -1078 7548 7510 * 8126 44 17 5 chr4 112676752 112677793 -89650554 - HERV17 LTR ERV1 -2607 6019 4966 470 194 66 82 chr4 112677806 112678002 -89650345 + MER20B DNA MER1_type 560 752 -31 1795 176 27 83 chr4 112678005 112678489 -89649858 - L1M4 LINE L1 -402 5776 5320 5513 43 3 1 chr4 112678508 112679185 -89649162 - L1PA7 LINE L1 0 6154 5477 28 48 0 0 chr4 112679185 112679227 -89649120 + AT_rich Low_complexity Low_complexity 1 42 0 1229 69 18 133 chr4 112680965 112681304 -89647043 - L1PA7 LINE L1 -641 5490 5193 * 1696 206 50 12 chr4 112681301 112681700 -89646647 + L1MB5 LINE L1 5755 6168 -6 1311 215 102 27 chr4 112681750 112682192 -89646155 - Charlie4a DNA MER1_type -4 504 30 291 77 0 0 chr4 112682399 112682438 -89645909 - U6 snRNA snRNA -68 39 1 976 207 6 0 chr4 112683410 112683589 -89644758 - AluSg/x SINE Alu 0 312 133 309 95 0 0 chr4 112683589 112683631 -89644716 - Alu SINE Alu -259 43 2 2321 54 3 17 chr4 112683667 112683962 -89644385 + AluY SINE Alu 1 291 -20 354 300 35 57 chr4 112684015 112684242 -89644105 - L2 LINE L2 -1 3312 3091 339 248 46 9 chr4 112684245 112684354 -89643993 - MER20B DNA MER1_type -235 548 436 834 242 35 42 chr4 112684357 112684642 -89643705 - MER20B DNA MER1_type -474 309 27 3414 164 15 5 chr4 112686421 112687037 -89641310 - L1MC1 LINE L1 0 6333 5712 324 0 0 0 chr4 112687043 112687079 -89641268 + (TG)n Simple_repeat Simple_repeat 1 36 0 1659 140 57 33 chr4 112687081 112687416 -89640931 - L1PA15 LINE L1 -74 6091 5749 506 199 29 0 chr4 112687419 112687555 -89640792 - L1M4 LINE L1 -816 5330 5191 865 283 81 25 chr4 112688385 112688742 -89639605 + LTR16A LTR ERVL 63 439 -11 1823 164 3 13 chr4 112689791 112690089 -89638258 - AluJb SINE Alu -17 295 1 238 146 0 0 chr4 112690290 112690331 -89638016 - MLT2F LTR ERVL -621 42 2 347 138 0 100 chr4 112690590 112690670 -89637677 - AluJ/F(R)AM SINE Alu -96 206 141 2107 122 10 3 chr4 112690671 112690982 -89637365 + AluSp SINE Alu 1 313 0 228 214 0 0 chr4 112691172 112691214 -89637133 + L2 LINE L2 3250 3291 -22 237 264 91 66 chr4 112692554 112692675 -89635672 + MIR SINE MIR 22 145 -117 562 254 35 75 chr4 112693276 112693477 -89634870 + MIR3 SINE MIR 5 197 -11 354 302 121 34 chr4 112694248 112694397 -89633950 + MIR3 SINE MIR 3 164 -44 409 304 72 0 chr4 112694779 112694917 -89633430 + MIR SINE MIR 115 262 0 894 203 6 11 chr4 112695066 112695243 -89633104 - AluJb SINE Alu -1 311 136 2453 287 97 32 chr4 112696998 112697331 -89631016 + L2 LINE L2 1840 2150 -1163 1012 193 41 32 chr4 112697331 112697549 -89630798 - MER58A DNA MER1_type 0 224 5 2453 287 97 32 chr4 112697549 112698384 -89629963 + L2 LINE L2 2150 3081 -232 3837 156 18 18 chr4 112698384 112699095 -89629252 + MER50 LTR ERV1 1 711 -23 334 311 124 38 chr4 112699096 112699305 -89629042 + L2 LINE L2 3083 3309 -4 552 252 64 0 chr4 112699557 112699775 -89628572 + HAL1 LINE L1 1103 1334 -1173 910 242 153 12 chr4 112699852 112700191 -89628156 + HAL1 LINE L1 1514 1900 -607 389 326 21 21 chr4 112700373 112700517 -89627830 - MER5A DNA MER1_type 0 189 46 2140 118 103 3 chr4 112700698 112701029 -89627318 - THE1B LTR MaLR 0 364 1 11441 89 19 3 chr4 112701029 112702584 -89625763 - THE1B-int LTR MaLR 0 1580 1 1997 147 93 0 chr4 112702584 112702917 -89625430 - THE1B LTR MaLR 0 364 1 304 234 99 7 chr4 112702982 112703123 -89625224 + HAL1 LINE L1 2245 2398 -109 2706 150 36 17 chr4 112703883 112704357 -89623990 + MER72 LTR ERV1 1 483 -239 487 95 40 0 chr4 112704347 112704421 -89623926 + MER72 LTR ERV1 646 722 0 * 721 164 25 0 chr4 112705102 112705224 -89623123 + MER2 DNA MER2_type 1 125 -220 440 196 156 39 chr4 112705280 112705459 -89622888 + MER2 DNA MER2_type 121 320 -25 1804 206 83 46 chr4 112705530 112706121 -89622226 - L1ME1 LINE L1 -21 6145 5533 363 289 0 11 chr4 112706517 112706607 -89621740 - L2 LINE L2 -4 3309 3221 2252 96 23 0 chr4 112706736 112707039 -89621308 - AluSx SINE Alu -2 310 1 1306 162 22 41 chr4 112707094 112707409 -89620938 - L1MD3 LINE L1 -6 7989 7681 1445 164 115 35 chr4 112707410 112707717 -89620630 - L1MD3 LINE L1 -912 7083 6743 1597 149 106 7 chr4 112707717 112707992 -89620355 + AluJo SINE Alu 1 302 -10 1445 164 115 35 chr4 112707992 112708031 -89620316 - L1MD3 LINE L1 -1252 6743 6709 282 288 234 15 chr4 112709192 112709397 -89618950 - MIR SINE MIR 0 262 13 304 337 10 0 chr4 112710049 112710147 -89618200 - MIR SINE MIR -151 111 13 207 264 0 0 chr4 112710235 112710288 -89618059 + (TG)n Simple_repeat Simple_repeat 2 54 0 603 212 218 6 chr4 112710386 112710565 -89617782 - L2 LINE L2 0 3313 3097 2250 59 0 24 chr4 112710948 112711235 -89617112 + AluY SINE Alu 1 280 -31 1007 41 0 24 chr4 112711112 112711235 -89617112 + AluY SINE Alu 161 340 0 412 83 0 0 chr4 112711235 112711295 -89617052 + (CAA)n Simple_repeat Simple_repeat 1 180 0 1364 139 32 4 chr4 112712153 112712404 -89615943 - L1MB3 LINE L1 -1 6182 5925 586 269 29 29 chr4 112713022 112713197 -89615150 + MER5A DNA MER1_type 15 189 0 347 301 12 75 chr4 112714374 112714547 -89613800 + MER5B DNA MER1_type 11 172 -6 626 224 247 20 chr4 112714563 112714675 -89613672 - MER5C DNA MER1_type -5 319 234 2656 42 0 0 chr4 112714675 112714983 -89613364 + AluY SINE Alu 1 308 -3 1469 141 9 0 chr4 112714984 112715211 -89613136 + AluY SINE Alu 77 305 -6 626 224 247 20 chr4 112715211 112715351 -89612996 - MER5C DNA MER1_type -89 235 7 30 27 0 0 chr4 112715685 112715722 -89612625 + AT_rich Low_complexity Low_complexity 1 37 0 193 301 32 65 chr4 112715731 112715824 -89612523 - MIR SINE MIR -56 206 117 34 0 0 22 chr4 112716305 112716335 -89612012 + AT_rich Low_complexity Low_complexity 1 31 -13 2901 0 0 0 chr4 112716335 112716645 -89611702 - AluYa8 SINE Alu 0 310 1 34 0 0 22 chr4 112716645 112716659 -89611688 + AT_rich Low_complexity Low_complexity 31 44 0 23 0 0 0 chr4 112716991 112717014 -89611333 + AT_rich Low_complexity Low_complexity 1 23 0 2011 146 0 37 chr4 112717536 112717857 -89610490 + AluSx SINE Alu 1 309 -3 2751 145 50 18 chr4 112717912 112718458 -89609889 - L1MA7 LINE L1 -1 6290 5728 1463 151 8 19 chr4 112718461 112718726 -89609621 - L1MA7 LINE L1 -1877 4269 4008 38 0 0 0 chr4 112719940 112719978 -89608369 + AT_rich Low_complexity Low_complexity 1 38 0 196 243 203 0 chr4 112720424 112720498 -89607849 - L2 LINE L2 0 3272 3184 481 199 157 42 chr4 112720565 112720731 -89607616 + MIR SINE MIR 68 252 -10 22 35 0 0 chr4 112720859 112720888 -89607459 + AT_rich Low_complexity Low_complexity 1 29 0 558 310 47 37 chr4 112721076 112721413 -89606934 + L2 LINE L2 2614 2954 -318 * 1244 260 81 35 chr4 112721406 112721841 -89606506 - L2 LINE L2 -1 3312 2858 219 69 0 0 chr4 112721913 112721942 -89606405 + (GA)n Simple_repeat Simple_repeat 1 29 0 414 0 0 0 chr4 112721944 112721990 -89606357 + (TG)n Simple_repeat Simple_repeat 1 46 0 180 0 0 0 chr4 112722117 112722137 -89606210 + (T)n Simple_repeat Simple_repeat 1 20 0 927 294 114 15 chr4 112722189 112722645 -89605702 + L2 LINE L2 2813 3313 0 519 237 178 7 chr4 112723171 112723323 -89605024 + MIR SINE MIR 70 247 -15 863 219 0 0 chr4 112723420 112723575 -89604772 + FRAM SINE Alu 8 162 -14 536 281 112 19 chr4 112724010 112724358 -89603989 - L1ME LINE L1 -514 5648 5260 223 344 23 23 chr4 112724841 112724972 -89603375 + L3 LINE CR1 1349 1479 -98 2173 96 7 3 chr4 112725021 112725323 -89603024 + AluY SINE Alu 1 303 -8 2193 50 7 4 chr4 112725607 112725888 -89602459 + L1PA4 LINE L1 5866 6147 -8 22 0 0 0 chr4 112725922 112725944 -89602403 + AT_rich Low_complexity Low_complexity 1 22 0 241 170 0 21 chr4 112726037 112726084 -89602263 + L2 LINE L2 3268 3313 0 273 333 58 0 chr4 112726280 112726400 -89601947 + MIR SINE MIR 46 172 -90 23 0 0 0 chr4 112727520 112727543 -89600804 + AT_rich Low_complexity Low_complexity 1 23 0 767 246 78 24 chr4 112727789 112727956 -89600391 + MER58A DNA MER1_type 1 176 -48 24 0 0 0 chr4 112727956 112727980 -89600367 + AT_rich Low_complexity Low_complexity 1 24 0 213 369 25 25 chr4 112728161 112728318 -89600029 + L2 LINE L2 1250 1406 -1908 6912 190 46 7 chr4 112728342 112729338 -89599009 - L1P5 LINE L1 -714 6145 5068 233 56 0 28 chr4 112729338 112729374 -89598973 + (TG)n Simple_repeat Simple_repeat 1 35 0 6912 190 46 7 chr4 112729374 112730001 -89598346 - L1P5 LINE L1 -1791 5068 4467 361 232 89 0 chr4 112730018 112730130 -89598217 - L1P5 LINE L1 -3587 3262 3141 * 498 149 0 23 chr4 112730124 112730211 -89598136 - L1P5 LINE L1 -4452 2397 2313 232 195 0 0 chr4 112730211 112730252 -89598095 - U6 snRNA snRNA 0 107 67 960 218 104 0 chr4 112730998 112731191 -89597156 - MER20 DNA MER1_type 0 219 7 268 308 131 0 chr4 112731320 112731450 -89596897 - L3 LINE CR1 -336 1241 1095 750 177 8 0 chr4 112731457 112731587 -89596760 + FLAM_C SINE Alu 3 133 0 1228 164 3 31 chr4 112733254 112733541 -89594806 + L1PA4 LINE L1 5869 6147 -8 241 170 0 21 chr4 112733690 112733737 -89594610 + L2 LINE L2 3268 3313 0 273 333 58 0 chr4 112733933 112734053 -89594294 + MIR SINE MIR 46 172 -90 23 0 0 0 chr4 112735173 112735196 -89593151 + AT_rich Low_complexity Low_complexity 1 23 0 767 246 78 24 chr4 112735442 112735609 -89592738 + MER58A DNA MER1_type 1 176 -48 24 0 0 0 chr4 112735609 112735633 -89592714 + AT_rich Low_complexity Low_complexity 1 24 0 218 367 25 25 chr4 112735813 112735971 -89592376 + L2 LINE L2 1249 1406 -1908 6823 192 45 7 chr4 112735994 112736991 -89591356 - L1P5 LINE L1 -714 6145 5069 233 56 0 28 chr4 112736991 112737027 -89591320 + (TG)n Simple_repeat Simple_repeat 1 35 0 6823 192 45 7 chr4 112737027 112737654 -89590693 - L1P5 LINE L1 -1790 5069 4467 363 241 89 0 chr4 112737671 112737783 -89590564 - L1P5 LINE L1 -3587 3262 3141 * 490 161 0 23 chr4 112737777 112737864 -89590483 - L1P5 LINE L1 -4452 2397 2313 232 195 0 0 chr4 112737864 112737905 -89590442 - U6 snRNA snRNA 0 107 67 960 218 104 0 chr4 112738651 112738844 -89589503 - MER20 DNA MER1_type 0 219 7 268 308 131 0 chr4 112738973 112739103 -89589244 - L3 LINE CR1 -336 1241 1095 750 177 8 0 chr4 112739110 112739240 -89589107 + FLAM_C SINE Alu 3 133 0 588 316 38 19 chr4 112740194 112740403 -89587944 - MIR SINE MIR -41 221 9 1549 77 50 9 chr4 112740403 112740624 -89587723 + MER30 DNA MER1_type 1 230 0 3666 149 55 22 chr4 112741126 112741849 -89586498 - L1MB5 LINE L1 0 6174 5428 436 175 22 36 chr4 112741964 112742101 -89586246 - L1MA9 LINE L1 0 6312 6178 436 364 46 29 chr4 112742185 112742424 -89585923 + MIR SINE MIR 7 249 -13 285 248 38 29 chr4 112744289 112744394 -89583953 - L1M LINE L1 -2399 5409 5304 1816 67 8 0 chr4 112744407 112744647 -89583700 - L1PA7 LINE L1 -3 6151 5910 13673 140 22 26 chr4 112744655 112747019 -89581328 - L1P LINE L1 -3783 2363 11 556 223 39 8 chr4 112747089 112747219 -89581128 - L1ME2 LINE L1 -27 6137 6004 1716 273 95 30 chr4 112747239 112747471 -89580876 - L1MEc LINE L1 -4795 1601 1386 423 56 0 0 chr4 112747471 112747525 -89580822 + (TG)n Simple_repeat Simple_repeat 2 55 0 1716 273 95 30 chr4 112747525 112748290 -89580057 - L1MEc LINE L1 -5010 1386 539 695 249 28 5 chr4 112748474 112748687 -89579660 - L1MEc LINE L1 -6104 292 75 241 125 36 18 chr4 112749256 112749312 -89579035 + CT-rich Low_complexity Low_complexity 1 57 0 439 299 126 10 chr4 112749595 112749802 -89578545 + MIR SINE MIR 32 262 0 1812 153 10 3 chr4 112751187 112751475 -89576872 - AluSx SINE Alu -21 291 2 21 57 0 0 chr4 112751639 112751674 -89576673 + AT_rich Low_complexity Low_complexity 1 35 0 29 0 0 0 chr4 112751777 112751806 -89576541 + AT_rich Low_complexity Low_complexity 1 29 0 619 213 22 0 chr4 112752832 112752968 -89575379 + FLAM_C SINE Alu 1 139 -4 1832 121 4 7 chr4 112753007 112753279 -89575068 + AluSp SINE Alu 43 313 0 2024 52 0 0 chr4 112753816 112754065 -89574282 + L1PA4 LINE L1 5892 6140 -15 261 0 0 0 chr4 112754068 112754097 -89574250 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 483 303 66 41 chr4 112755112 112755356 -89572991 - MIR SINE MIR -8 254 5 337 285 38 82 chr4 112755714 112755872 -89572475 + MIR3 SINE MIR 43 193 -15 230 333 13 13 chr4 112756034 112756112 -89572235 - MIR SINE MIR -180 82 5 368 276 57 0 chr4 112757339 112757444 -89570903 + MIR SINE MIR 81 191 -71 5336 184 138 22 chr4 112757452 112758939 -89569408 + MER52A LTR ERV1 42 1755 0 338 290 154 28 chr4 112758941 112759227 -89569120 - L1ME2 LINE L1 -2181 5627 5306 370 287 62 43 chr4 112759308 112759517 -89568830 - L1ME2 LINE L1 -960 5186 4974 13434 97 11 6 chr4 112759758 112764304 -89564043 - L1PA6 LINE L1 -2 6152 11 189 338 9 137 chr4 112764994 112765213 -89563134 + L2 LINE L2 3001 3191 -81 2607 201 39 24 chr4 112765232 112765869 -89562478 - L1ME1 LINE L1 -9 6226 5580 391 215 29 81 chr4 112765970 112766142 -89562205 - L1ME1 LINE L1 -4574 1822 1660 750 35 0 0 chr4 112766148 112766235 -89562112 - U6 snRNA snRNA -3 104 18 346 344 50 0 chr4 112766241 112766401 -89561946 - L1ME1 LINE L1 -4732 1664 1497 1181 205 9 18 chr4 112766411 112766640 -89561707 - MER8 DNA MER2_type 0 239 13 482 273 75 76 chr4 112766649 112767293 -89561054 - L1ME1 LINE L1 -4908 1488 846 21 71 0 0 chr4 112767786 112767828 -89560519 + AT_rich Low_complexity Low_complexity 1 42 0 2331 56 0 7 chr4 112768125 112768439 -89559908 - AluY SINE Alu 0 312 1 284 320 177 7 chr4 112768596 112768743 -89559604 - MIR SINE MIR -71 191 20 28 29 0 0 chr4 112768874 112768909 -89559438 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr4 112769057 112769092 -89559255 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr4 112769724 112769766 -89558581 + AT_rich Low_complexity Low_complexity 1 42 0 1349 186 3 67 chr4 112769895 112770259 -89558088 + AluJb SINE Alu 1 344 0 1050 330 85 16 chr4 112770332 112770867 -89557480 + L2 LINE L2 2499 3070 -243 766 163 31 0 chr4 112770978 112771107 -89557240 - FLAM_A SINE Alu 0 133 1 751 144 0 0 chr4 112771679 112771804 -89556543 + L1MB4 LINE L1 6054 6178 -2 215 386 57 23 chr4 112771875 112772051 -89556296 + MIR SINE MIR 2 133 -75 1401 159 60 20 chr4 112772618 112772869 -89555478 - AluSq SINE Alu -47 266 6 2239 172 6 0 chr4 112773635 112773989 -89554358 - Tigger7 DNA MER2_type -2131 356 1 259 310 101 47 chr4 112774269 112774398 -89553949 + L2 LINE L2 3137 3272 0 25 31 0 0 chr4 112774852 112774884 -89553463 + AT_rich Low_complexity Low_complexity 1 32 0 39 88 0 0 chr4 112775478 112775580 -89552767 + AT_rich Low_complexity Low_complexity 1 102 0 2196 166 43 10 chr4 112775793 112776210 -89552137 - MSTB1 LTR MaLR -1 431 1 815 275 8 57 chr4 112776890 112776977 -89551370 - MIR SINE MIR -19 243 153 950 216 82 5 chr4 112776977 112777185 -89551162 - MER58A DNA MER1_type 0 224 1 815 275 8 57 chr4 112777185 112777341 -89551006 - MIR SINE MIR -109 153 12 190 356 60 34 chr4 112777633 112777782 -89550565 - L2 LINE L2 -35 3278 3126 25 0 0 0 chr4 112778716 112778741 -89549606 + AT_rich Low_complexity Low_complexity 1 25 0 702 242 76 16 chr4 112779152 112779360 -89548987 - MIR SINE MIR 0 262 41 2174 125 0 22 chr4 112779360 112779679 -89548668 - AluSx SINE Alu 0 312 1 702 242 76 16 chr4 112779679 112779694 -89548653 - MIR SINE MIR -221 41 28 380 325 7 26 chr4 112780072 112780223 -89548124 + MER5A DNA MER1_type 39 186 -3 1567 171 36 0 chr4 112780223 112780543 -89547804 - AluJo SINE Alu 0 330 1 562 396 70 33 chr4 112780609 112781036 -89547311 + L2 LINE L2 2826 3268 -4 2285 106 0 0 chr4 112781063 112781364 -89546983 - AluSx SINE Alu -11 301 1 6082 92 33 2 chr4 112782395 112783801 -89544546 - L1PA8 LINE L1 0 6172 4774 263 217 0 0 chr4 112784450 112784496 -89543851 + L2 LINE L2 3234 3279 -34 2143 128 0 0 chr4 112784906 112785210 -89543137 - AluSx SINE Alu -8 304 1 62 0 0 0 chr4 112785303 112785365 -89542982 + AT_rich Low_complexity Low_complexity 1 62 0 549 162 39 123 chr4 112785454 112785658 -89542689 + MER53 DNA DNA 1 187 -2 497 126 0 23 chr4 112785967 112786054 -89542293 - L1PA11 LINE L1 -4 6170 6086 223 363 148 0 chr4 112786691 112786826 -89541521 - L3b LINE CR1 -139 1444 1290 1943 163 0 3 chr4 112787572 112787872 -89540475 + AluSx SINE Alu 1 299 -13 220 62 21 42 chr4 112788293 112788341 -89540006 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 963 270 62 65 chr4 112788385 112789050 -89539297 - L2 LINE L2 -55 3258 2605 1652 169 0 20 chr4 112790739 112791035 -89537312 - AluJo SINE Alu -22 290 1 189 147 0 0 chr4 112791194 112791228 -89537119 + (TG)n Simple_repeat Simple_repeat 1 34 0 266 304 83 32 chr4 112791403 112791716 -89536631 + L1ME LINE L1 2677 3005 -3141 472 248 78 39 chr4 112791862 112792197 -89536150 + L1ME LINE L1 3121 3468 -2678 312 299 34 27 chr4 112792201 112792348 -89535999 + L1ME LINE L1 4533 4680 -1466 561 276 72 38 chr4 112792396 112792863 -89535484 + L1ME LINE L1 5174 5659 -503 21 36 0 0 chr4 112793110 112793138 -89535209 + AT_rich Low_complexity Low_complexity 1 28 0 584 299 55 12 chr4 112793275 112793624 -89534723 + L1ME1 LINE L1 3165 3543 -2603 * 630 251 158 5 chr4 112793613 112793816 -89534531 + L1ME1 LINE L1 4096 4329 -1817 2278 107 0 0 chr4 112793818 112794116 -89534231 + AluSx SINE Alu 3 300 -12 749 175 0 0 chr4 112794116 112794253 -89534094 + AluSq SINE Alu 134 270 -43 378 0 0 0 chr4 112794280 112794322 -89534025 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 315 202 0 0 chr4 112794331 112794415 -89533932 + (TA)n Simple_repeat Simple_repeat 2 85 0 2234 230 139 33 chr4 112794424 112795332 -89533015 + L1ME1 LINE L1 4327 5330 -816 2801 225 55 34 chr4 112795375 112796191 -89532156 + L1ME1 LINE L1 5312 6306 -28 612 304 121 5 chr4 112796231 112796438 -89531909 + MIR SINE MIR 32 262 0 264 284 0 27 chr4 112796499 112796573 -89531774 - L3 LINE CR1 -106 1471 1400 21 0 0 0 chr4 112797831 112797852 -89530495 + AT_rich Low_complexity Low_complexity 1 21 0 944 140 0 0 chr4 112798753 112798896 -89529451 + FLAM_C SINE Alu 1 143 0 25 0 0 0 chr4 112799324 112799349 -89528998 + AT_rich Low_complexity Low_complexity 1 25 0 704 178 0 8 chr4 112799349 112799467 -89528880 - FLAM_C SINE Alu -16 117 1 324 0 0 0 chr4 112799948 112799984 -89528363 + (TG)n Simple_repeat Simple_repeat 2 37 0 856 143 0 0 chr4 112800612 112800745 -89527602 + FLAM_C SINE Alu 1 133 0 803 201 78 26 chr4 112800890 112801132 -89527215 - MLT2C2 LTR ERVL -3 461 222 818 141 15 7 chr4 112801704 112801839 -89526508 - AluJo SINE Alu -176 136 1 2206 87 3 7 chr4 112802462 112802760 -89525587 - L1PA10 LINE L1 -6 6162 5866 253 267 0 47 chr4 112802901 112802987 -89525360 - L1ME LINE L1 -454 5667 5586 332 268 25 96 chr4 112803204 112803402 -89524945 - L1ME LINE L1 -772 5374 5191 1707 142 4 7 chr4 112803877 112804158 -89524189 + AluJb SINE Alu 5 284 -28 426 20 0 0 chr4 112804158 112804209 -89524138 + (CA)n Simple_repeat Simple_repeat 2 52 0 568 168 42 8 chr4 112804235 112804354 -89523993 - LTR37B LTR ERV1 -148 320 198 245 299 26 26 chr4 112804523 112804640 -89523707 - L1ME LINE L1 -2066 4080 3964 1336 62 0 0 chr4 112804657 112804819 -89523528 + AluY SINE Alu 125 286 -25 32 0 0 0 chr4 112804819 112804851 -89523496 + AT_rich Low_complexity Low_complexity 1 32 0 516 246 96 22 chr4 112804851 112805123 -89523224 - L1ME LINE L1 -2193 3953 3662 636 289 114 55 chr4 112805135 112805703 -89522644 - L1ME LINE L1 -2527 3619 3018 207 100 75 0 chr4 112807536 112807576 -89520771 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 22 80 0 0 chr4 112807654 112807704 -89520643 + AT_rich Low_complexity Low_complexity 1 50 0 342 330 82 37 chr4 112807799 112808069 -89520278 - L1ME LINE L1 -3617 2529 2248 4731 270 104 55 chr4 112808132 112809251 -89519096 - L2 LINE L2 -1 3312 2249 2385 70 0 0 chr4 112809251 112809550 -89518797 + AluY SINE Alu 1 299 -12 4731 270 104 55 chr4 112809550 112810748 -89517599 - L2 LINE L2 -1064 2249 881 2047 119 10 0 chr4 112810824 112811126 -89517221 + AluSq SINE Alu 1 305 -8 735 201 182 81 chr4 112811284 112811806 -89516541 - L1MC5 LINE L1 -196 7765 7191 818 141 15 7 chr4 112812011 112812146 -89516201 - AluJo SINE Alu -176 136 1 2206 87 3 7 chr4 112812769 112813067 -89515280 - L1PA10 LINE L1 -6 6162 5866 311 267 0 47 chr4 112813208 112813294 -89515053 - L1ME LINE L1 -454 5667 5586 879 76 8 23 chr4 112814187 112814318 -89514029 + AluY SINE Alu 5 133 -178 689 181 0 8 chr4 112814420 112814547 -89513800 + AluSg/x SINE Alu 185 310 0 23 0 0 0 chr4 112815919 112815942 -89512405 + AT_rich Low_complexity Low_complexity 1 23 0 2338 52 0 0 chr4 112816288 112816574 -89511773 + AluYa8 SINE Alu 1 286 -24 464 193 66 86 chr4 112816886 112817083 -89511264 + MER20B DNA MER1_type 560 752 -31 1795 176 27 83 chr4 112817086 112817570 -89510777 - L1M4 LINE L1 -402 5776 5320 7134 53 9 0 chr4 112817589 112819001 -89509346 - L1PA7 LINE L1 0 6154 4631 204 337 90 0 chr4 112819517 112819606 -89508741 - MIR3 SINE MIR -53 155 59 1941 158 0 10 chr4 112819644 112819948 -89508399 - AluJb SINE Alu -11 301 1 1800 133 77 15 chr4 112820021 112820360 -89507987 + MLT1A1 LTR MaLR 6 365 0 1039 182 66 111 chr4 112821001 112821380 -89506967 + MER57A LTR ERV1 42 403 0 634 265 49 41 chr4 112821383 112821628 -89506719 + MER57A-int LTR ERV1 3 249 -7288 22 0 0 0 chr4 112821670 112821692 -89506655 + AT_rich Low_complexity Low_complexity 1 22 0 2106 129 7 0 chr4 112821713 112822008 -89506339 + AluSx SINE Alu 16 312 0 24 77 0 0 chr4 112822533 112822585 -89505762 + GC_rich Low_complexity Low_complexity 1 52 0 982 208 100 0 chr4 112824470 112824711 -89503636 - L1PB4 LINE L1 -17 6139 5875 2121 100 0 10 chr4 112825210 112825499 -89502848 - AluY SINE Alu -25 286 1 1218 146 16 65 chr4 112825581 112825889 -89502458 - AluSx SINE Alu -15 297 5 273 243 14 37 chr4 112826162 112826349 -89501998 + L1MB1 LINE L1 5991 6174 0 22 0 0 0 chr4 112827228 112827250 -89501097 + AT_rich Low_complexity Low_complexity 1 22 0 3487 217 38 4 chr4 112827425 112828365 -89499982 - L1 LINE L1 -2414 3732 2761 29 0 0 0 chr4 112828796 112828825 -89499522 + AT_rich Low_complexity Low_complexity 1 29 0 5461 141 61 4 chr4 112828926 112829897 -89498450 - Tigger1 DNA MER2_type -1392 1026 1 2239 113 0 3 chr4 112830389 112830689 -89497658 + AluSx SINE Alu 1 299 -13 197 248 83 105 chr4 112830846 112830979 -89497368 + MIR SINE MIR 133 262 0 34001 54 3 1 chr4 112831730 112837096 -89491251 + L1PA5 LINE L1 792 6167 0 2246 122 3 3 chr4 112837852 112838164 -89490183 + AluSx SINE Alu 1 312 0 21 0 0 0 chr4 112838217 112838238 -89490109 + AT_rich Low_complexity Low_complexity 1 21 0 1680 199 0 10 chr4 112838242 112838533 -89489814 - AluSx SINE Alu -24 288 1 778 153 24 29 chr4 112839091 112839261 -89489086 + PABL_B LTR ERV1 499 667 0 315 244 13 26 chr4 112839724 112839802 -89488545 + L2 LINE L2 3205 3281 -32 343 301 150 6 chr4 112839892 112840065 -89488282 - MIR SINE MIR -8 254 57 313 85 0 0 chr4 112840935 112840982 -89487365 - U5 snRNA snRNA -69 47 1 26 64 0 0 chr4 112841492 112841539 -89486808 + AT_rich Low_complexity Low_complexity 1 47 0 757 318 50 3 chr4 112842139 112842476 -89485871 + L1MC1 LINE L1 34 386 -6010 * 4987 201 48 72 chr4 112842451 112842836 -89485511 + L1MC1 LINE L1 3737 4129 -2273 2042 130 0 0 chr4 112842836 112843121 -89485226 - AluSx SINE Alu -27 285 1 4987 201 48 72 chr4 112843121 112845343 -89483004 + L1MC1 LINE L1 4129 6281 -121 1159 251 86 12 chr4 112845340 112845819 -89482528 + L1M4 LINE L1 4580 5093 -1053 * 2233 128 0 0 chr4 112845827 112846125 -89482222 - AluSx SINE Alu -12 300 3 691 124 9 0 chr4 112846175 112846288 -89482059 - MLT2A2 LTR ERVL 0 453 340 401 244 0 9 chr4 112846896 112847011 -89481336 - L1MC5 LINE L1 -101 7860 7747 240 297 73 19 chr4 112848680 112848801 -89479546 - MIR SINE MIR -67 141 11 731 241 6 0 chr4 112849646 112849812 -89478535 - MIR SINE MIR -22 240 74 260 378 47 47 chr4 112850137 112850502 -89477845 - L2 LINE L2 -13 3259 2895 187 250 0 0 chr4 112850535 112850575 -89477772 - L2 LINE L2 -5 3308 3269 11626 78 7 2 chr4 112852393 112854748 -89473599 - L1PA7 LINE L1 -3 6151 3785 625 280 75 42 chr4 112855278 112855719 -89472628 - L2 LINE L2 -149 3164 2711 1931 142 0 4 chr4 112855810 112856114 -89472233 + AluSx SINE Alu 5 307 0 281 202 24 95 chr4 112856132 112856216 -89472131 - MIR3 SINE MIR -37 171 94 220 293 146 0 chr4 112857659 112857741 -89470606 - MIR SINE MIR -3 259 166 226 304 18 0 chr4 112857763 112857819 -89470528 - L2 LINE L2 0 3272 3216 510 262 40 20 chr4 112857826 112857975 -89470372 - MIR SINE MIR -109 153 2 2203 189 54 5 chr4 112858425 112858870 -89469477 + MLT1C LTR MaLR 1 467 0 609 267 124 5 chr4 112858898 112859108 -89469239 - MIR SINE MIR -25 237 3 2330 52 7 3 chr4 112859190 112859481 -89468866 - AluY SINE Alu -19 292 1 22 35 0 0 chr4 112860665 112860694 -89467653 + AT_rich Low_complexity Low_complexity 1 29 0 1233 142 97 129 chr4 112861207 112861559 -89466788 - MSTA LTR MaLR -9 419 91 1813 141 173 16 chr4 112861559 112861928 -89466419 - MSTA LTR MaLR -1 427 1 1233 142 97 129 chr4 112861928 112861949 -89466398 - MSTA LTR MaLR -337 91 71 3766 143 3 7 chr4 112861949 112862563 -89465784 - MSTA-int LTR MaLR -21 1559 948 21 36 0 0 chr4 112862770 112862798 -89465549 + AT_rich Low_complexity Low_complexity 1 28 0 684 155 136 70 chr4 112863449 112863662 -89464685 + MSTA LTR MaLR 185 411 -17 401 117 0 0 chr4 112863686 112863746 -89464601 - MSTA LTR MaLR 0 428 369 551 136 194 4 chr4 112863760 112863891 -89464456 - MSTA LTR MaLR -197 167 1 443 161 12 0 chr4 112863891 112863972 -89464375 - MSTA LTR MaLR -344 84 3 181 0 0 0 chr4 112864470 112864490 -89463857 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2419 58 0 3 chr4 112864490 112864775 -89463572 - AluY SINE Alu -6 305 1 482 276 70 49 chr4 112866149 112866334 -89462013 - MIR3 SINE MIR -12 196 8 1795 133 74 25 chr4 112866404 112866757 -89461590 - THE1C LTR MaLR -5 370 1 722 314 40 40 chr4 112868174 112868544 -89459803 + MLT1K LTR MaLR 168 537 -51 1089 273 57 36 chr4 112868849 112869233 -89459114 - L2 LINE L2 0 3313 2922 * 1416 239 107 59 chr4 112869219 112869676 -89458671 - L2 LINE L2 -561 2753 2275 650 161 36 9 chr4 112869694 112869806 -89458541 + L1MC3 LINE L1 7127 7241 -544 1990 180 26 37 chr4 112869806 112870157 -89458190 + MLT2A2 LTR ERVL 1 335 -219 7561 25 1 7 chr4 112870157 112871286 -89457061 + L1PA4 LINE L1 5029 6152 -3 1990 180 26 37 chr4 112871286 112871504 -89456843 + MLT2A2 LTR ERVL 335 554 0 2094 194 47 56 chr4 112871507 112871901 -89456446 + L1MC3 LINE L1 7240 7629 -156 3105 105 5 0 chr4 112871901 112872331 -89456016 - MER57B LTR ERV1 0 434 3 2094 194 47 56 chr4 112872331 112872473 -89455874 + L1MC3 LINE L1 7629 7771 -14 185 330 11 33 chr4 112872492 112872583 -89455764 - L2 LINE L2 -1265 2049 1961 2251 232 22 14 chr4 112872585 112873080 -89455267 - MLT1D LTR MaLR -2 503 5 1479 287 88 29 chr4 112873081 112873252 -89455095 - L2 LINE L2 -1371 1943 1784 1335 197 146 19 chr4 112873252 112873664 -89454683 - MLT2C2 LTR ERVL 0 464 1 1479 287 88 29 chr4 112873664 112874151 -89454196 - L2 LINE L2 -1530 1784 1246 4694 101 88 105 chr4 112874151 112875560 -89452787 + pTR5 LTR ERV1 749 2438 0 1315 308 84 32 chr4 112875561 112876123 -89452224 - L2 LINE L2 -2057 1257 667 1616 274 56 12 chr4 112876123 112876624 -89451723 - MER90 LTR ERV1 0 575 53 820 267 88 57 chr4 112876673 112877025 -89451322 - L2 LINE L2 -2644 670 308 1927 145 3 44 chr4 112877367 112877711 -89450636 + MER44D DNA MER2_type 1 600 -9 314 239 57 75 chr4 112878334 112878493 -89449854 + L1ME4a LINE L1 5964 6119 -2 378 170 20 30 chr4 112880069 112880169 -89448178 + L1MB4 LINE L1 6069 6167 -13 20728 52 5 1 chr4 112880169 112883545 -89444802 - L1PA5 LINE L1 -24 6130 2740 259 29 0 0 chr4 112883543 112883578 -89444769 + L1MB2 LINE L1 6136 6170 -1 * 516 270 115 26 chr4 112883657 112883883 -89444464 - MER112 DNA MER1_type 0 260 15 426 307 47 27 chr4 112885566 112885862 -89442485 + L1MEc LINE L1 22 323 -6073 2253 233 12 21 chr4 112885887 112886551 -89441796 + L1 LINE L1 2974 3631 -2515 656 160 0 0 chr4 112886555 112886661 -89441686 + L1 LINE L1 4108 4213 -1933 663 266 73 29 chr4 112886662 112886999 -89441348 + L1P4 LINE L1 2179 2500 -3735 2547 74 0 0 chr4 112886999 112887310 -89441037 + AluY SINE Alu 1 311 0 663 266 73 29 chr4 112887310 112887705 -89440642 + L1P4 LINE L1 2500 5758 -477 326 234 81 15 chr4 112887830 112887983 -89440364 - L1M4 LINE L1 -734 5432 5260 476 32 16 0 chr4 112887983 112888045 -89440302 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 326 234 81 15 chr4 112888045 112888092 -89440255 - L1M4 LINE L1 -906 5260 5218 4728 143 28 30 chr4 112888106 112888578 -89439769 - L1PA16 LINE L1 -5 6161 5689 2536 163 59 6 chr4 112888578 112889050 -89439297 + LOR1a LTR ERV1 1 497 0 4728 143 28 30 chr4 112889050 112889421 -89438926 - L1PA16 LINE L1 -477 5689 5319 7603 23 2 0 chr4 112889528 112890607 -89437740 + L1PA2 LINE L1 5073 6153 -2 24 0 0 0 chr4 112890611 112890635 -89437712 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 112891448 112891473 -89436874 + AT_rich Low_complexity Low_complexity 1 25 0 280 327 55 80 chr4 112892425 112892826 -89435521 + L2 LINE L2 2844 3234 -38 242 315 9 45 chr4 112893752 112893863 -89434484 - MARNA DNA Mariner -12 574 468 22 0 0 0 chr4 112893883 112893905 -89434442 + AT_rich Low_complexity Low_complexity 1 22 0 254 263 0 40 chr4 112894084 112894160 -89434187 - MIR SINE MIR 0 262 190 398 237 124 57 chr4 112894675 112894852 -89433495 - MIR SINE MIR 0 262 74 290 354 111 29 chr4 112895018 112895298 -89433049 + ERVL LTR ERVL 1163 1465 -3531 1613 329 66 40 chr4 112895539 112896237 -89432110 + ERVL LTR ERVL 1797 2539 -3225 1341 252 71 14 chr4 112896237 112896674 -89431673 - MLT1C LTR MaLR -4 463 2 1613 329 66 40 chr4 112896674 112897148 -89431199 + ERVL LTR ERVL 2539 2999 -2765 763 138 0 0 chr4 112897152 112897261 -89431086 + FLAM_C SINE Alu 5 113 -30 210 71 0 0 chr4 112897261 112897289 -89431058 + (TA)n Simple_repeat Simple_repeat 1 28 0 337 100 40 0 chr4 112897305 112897355 -89430992 + THE1A LTR MaLR 304 355 0 486 0 0 0 chr4 112897387 112897441 -89430906 + (TG)n Simple_repeat Simple_repeat 2 55 0 988 144 14 7 chr4 112897465 112897611 -89430736 + FRAM SINE Alu 1 146 -30 1495 138 12 31 chr4 112897752 112898006 -89430341 + THE1B LTR MaLR 116 364 0 559 350 70 24 chr4 112898139 112898866 -89429481 + ERVL LTR ERVL 3317 4118 -1646 1417 148 108 122 chr4 112899321 112899754 -89428593 - MSTA LTR MaLR -1 427 1 28 102 0 0 chr4 112899925 112900023 -89428324 + AT_rich Low_complexity Low_complexity 1 98 0 16505 114 14 16 chr4 112900477 112903049 -89425298 + L1PA6 LINE L1 552 3117 -3029 8904 72 11 17 chr4 112903049 112904554 -89423793 + L1PA6 LINE L1 4147 5608 -546 2246 105 0 10 chr4 112904554 112904867 -89423480 + AluSx SINE Alu 1 310 -2 8904 72 11 17 chr4 112904867 112905408 -89422939 + L1PA6 LINE L1 5608 6150 -4 1988 243 30 23 chr4 112905730 112906760 -89421587 - L1M4 LINE L1 -3270 3112 2068 4875 180 54 2 chr4 112906762 112908546 -89419801 - L1MA7 LINE L1 0 6291 4418 3100 231 42 33 chr4 112908634 112909617 -89418730 - L1M4 LINE L1 -4491 1893 902 1389 198 42 70 chr4 112909663 112910046 -89418301 + MLT1B LTR MaLR 1 372 -18 272 221 93 0 chr4 112910085 112910171 -89418176 - L1M4 LINE L1 -5508 876 783 10064 27 34 3 chr4 112910764 112912711 -89415636 + L1PA3 LINE L1 4181 6155 0 22 56 0 0 chr4 112913245 112913281 -89415066 + AT_rich Low_complexity Low_complexity 1 36 0 332 301 59 33 chr4 112913560 112913713 -89414634 + L1M4 LINE L1 3682 3838 -2308 263 24 0 0 chr4 112914275 112914316 -89414031 - AluY SINE Alu 0 302 262 8726 147 17 33 chr4 112914316 112915789 -89412558 - L1M1 LINE L1 -6095 1470 21 2350 78 0 0 chr4 112917934 112918227 -89410120 + AluY SINE Alu 1 293 -18 326 281 83 25 chr4 112918519 112918640 -89409707 + MIR SINE MIR 17 144 -64 7384 58 2 2 chr4 112918842 112919801 -89408546 - L1PA5 LINE L1 -3467 2679 1721 21271 47 2 3 chr4 112919801 112923262 -89405085 + L1PA5 LINE L1 2685 6152 -2 289 244 55 0 chr4 112923398 112923485 -89404862 - MIR SINE MIR -107 101 5 693 124 0 18 chr4 112923874 112923987 -89404360 + AluSq/x SINE Alu 23 133 -180 293 154 77 0 chr4 112924393 112924445 -89403902 + L2 LINE L2 3254 3309 -4 336 366 30 8 chr4 112925225 112925359 -89402988 + MIR SINE MIR 14 150 -112 245 250 59 0 chr4 112925614 112925682 -89402665 - MIR SINE MIR 0 262 191 867 291 181 7 chr4 112925872 112926336 -89402011 + L2 LINE L2 2391 2935 -379 508 284 39 25 chr4 112926445 112926790 -89401557 - L1ME3A LINE L1 -14 6156 5772 215 174 22 0 chr4 112926841 112926887 -89401460 + (TA)n Simple_repeat Simple_repeat 1 47 0 2679 147 30 11 chr4 112926900 112927362 -89400985 + L1MA4A LINE L1 5541 6011 -292 479 330 120 8 chr4 112927683 112927941 -89400406 - L3 LINE CR1 -1 1576 1290 24 32 0 0 chr4 112931374 112931405 -89396942 + AT_rich Low_complexity Low_complexity 1 31 0 905 212 24 45 chr4 112932156 112932448 -89395899 + L1MC5 LINE L1 7625 7910 -51 1404 209 84 0 chr4 112933601 112933888 -89394459 - AluJo SINE Alu 0 312 2 691 175 32 0 chr4 112933888 112934014 -89394333 - L1MB5 LINE L1 -33 6141 6012 274 325 122 9 chr4 112934024 112934142 -89394205 - MIR SINE MIR -62 146 24 808 181 83 0 chr4 112934147 112934291 -89394056 - MER5A DNA MER1_type 0 189 34 189 0 0 0 chr4 112935052 112935073 -89393274 + (TTTTTA)n Simple_repeat Simple_repeat 3 23 0 805 272 35 4 chr4 112935775 112936007 -89392340 + Charlie1 DNA MER1_type 1 239 -2522 504 304 150 0 chr4 112937053 112937273 -89391074 + MIR SINE MIR 8 260 -2 360 320 45 59 chr4 112938371 112938641 -89389706 - L2 LINE L2 -261 3052 2783 288 273 26 84 chr4 112938805 112938959 -89389388 - Charlie8 DNA MER1_type -2200 217 73 473 125 0 14 chr4 112938980 112939052 -89389295 + Tigger2 DNA MER2_type 3 73 -2645 717 249 23 6 chr4 112939086 112939259 -89389088 - MER8 DNA MER2_type -63 176 1 584 208 0 16 chr4 112939400 112939525 -89388822 + FRAM SINE Alu 46 168 -8 233 357 12 12 chr4 112940634 112940718 -89387629 + MIR SINE MIR 2 85 -177 594 290 65 14 chr4 112941623 112941840 -89386507 + MIR SINE MIR 35 262 0 24 0 0 0 chr4 112941866 112941890 -89386457 + AT_rich Low_complexity Low_complexity 1 24 0 28 29 0 0 chr4 112943666 112943701 -89384646 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 112944150 112944178 -89384169 + AT_rich Low_complexity Low_complexity 1 28 0 423 257 35 9 chr4 112945637 112945750 -89382597 - L2 LINE L2 -1 3312 3197 267 298 87 25 chr4 112945726 112945887 -89382460 - MIR SINE MIR -39 223 53 * 2590 69 3 0 chr4 112946052 112946385 -89381962 + L1PA8 LINE L1 5703 6036 -136 2143 128 7 0 chr4 112947626 112947930 -89380417 + AluSq SINE Alu 1 306 -7 195 339 202 4 chr4 112949663 112949911 -89378436 + L2 LINE L2 1944 2240 -1074 1274 305 48 17 chr4 112950023 112950683 -89377664 - L2 LINE L2 -1 3312 2630 1268 273 56 56 chr4 112950692 112951172 -89377175 - MLT1H LTR MaLR -29 520 41 283 361 110 7 chr4 112951199 112951354 -89376993 - L2 LINE L2 -761 2553 2383 417 355 38 16 chr4 112951401 112951584 -89376763 - MLT1K LTR MaLR -207 381 195 2283 104 0 3 chr4 112952561 112952868 -89375479 - AluSg SINE Alu -4 306 1 8194 31 0 0 chr4 112954216 112955957 -89372390 + L1PA3 LINE L1 4406 6148 -7 252 0 0 0 chr4 112955960 112955988 -89372359 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 28 48 0 0 chr4 112956161 112956203 -89372144 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr4 112956468 112956490 -89371857 + AT_rich Low_complexity Low_complexity 1 22 0 2299 105 0 3 chr4 112956610 112956915 -89371432 + AluSq SINE Alu 10 313 0 219 114 0 0 chr4 112957771 112957806 -89370541 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 479 185 22 0 chr4 112958082 112958174 -89370173 + L1PB3 LINE L1 5698 5791 -363 246 174 0 0 chr4 112958174 112958220 -89370127 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 2381 125 8 5 chr4 112958254 112958630 -89369717 + L1PB3 LINE L1 5776 6152 -2 306 0 0 0 chr4 112959617 112959651 -89368696 + (CA)n Simple_repeat Simple_repeat 1 34 0 433 235 178 40 chr4 112959784 112959962 -89368385 + MIR SINE MIR 38 240 -22 937 253 40 0 chr4 112960177 112960430 -89367917 - LTR43 LTR ERV1 -145 457 195 329 253 48 0 chr4 112960642 112960725 -89367622 - L2 LINE L2 -1056 2258 2172 22 35 0 0 chr4 112961385 112961414 -89366933 + AT_rich Low_complexity Low_complexity 1 29 0 341 323 39 16 chr4 112961418 112961545 -89366802 + MIR SINE MIR 12 141 -121 2568 184 6 4 chr4 112961547 112962036 -89366311 + L1MA9 LINE L1 5375 5864 -448 775 143 4 19 chr4 112962111 112962243 -89366104 - MLT1A1 LTR MaLR -3 429 250 493 139 16 107 chr4 112962389 112962511 -89365836 - L1MA9 LINE L1 -440 5872 5762 6584 184 41 12 chr4 112962515 112963750 -89364597 + MSTA-int LTR MaLR 381 1651 0 2389 151 34 10 chr4 112963750 112964168 -89364179 + MSTA LTR MaLR 1 428 0 652 174 79 155 chr4 112965237 112965502 -89362845 - MLT1A1 LTR MaLR -145 245 1 2557 187 24 41 chr4 112966821 112966923 -89361424 + L1MC3 LINE L1 7174 7276 -509 1947 139 9 25 chr4 112966923 112967240 -89361107 + AluSx SINE Alu 1 312 0 2557 187 24 41 chr4 112967240 112967751 -89360596 + L1MC3 LINE L1 7276 7777 -8 298 234 57 38 chr4 112967779 112967937 -89360410 - L1ME3A LINE L1 -266 5904 5744 677 133 55 16 chr4 112968006 112968134 -89360213 - AluSp/q SINE Alu 0 313 181 252 0 0 0 chr4 112968234 112968262 -89360085 + (CA)n Simple_repeat Simple_repeat 1 28 0 215 152 22 0 chr4 112968681 112968727 -89359620 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 39011 41 29 2 chr4 112969278 112974160 -89354187 + L1P LINE L1 2 5017 -1129 1688 174 42 44 chr4 112974495 112974904 -89353443 - L1MC2 LINE L1 0 6344 5937 984 169 0 0 chr4 112974917 112975077 -89353270 - L1PB4 LINE L1 -7 6149 5990 616 199 7 7 chr4 112975082 112975228 -89353119 - L1MC2 LINE L1 -815 5331 5186 347 401 0 0 chr4 112975432 112975584 -89352763 - MIR SINE MIR -32 230 79 1122 85 0 17 chr4 112976432 112976608 -89351739 + (GAA)n Simple_repeat Simple_repeat 2 174 0 257 106 0 21 chr4 112976614 112976661 -89351686 + (AGGGGG)n Simple_repeat Simple_repeat 3 48 0 219 280 0 0 chr4 112976661 112976711 -89351636 + GA-rich Low_complexity Low_complexity 2 51 0 377 301 113 54 chr4 112976734 112977142 -89351205 + L1MCc LINE L1 24 455 -5968 2006 248 79 12 chr4 112977366 112978075 -89350272 + L1MCc LINE L1 807 1571 -4851 1252 265 121 23 chr4 112978085 112978835 -89349512 + L1MCc LINE L1 2190 3013 -4109 305 276 52 52 chr4 112978837 112978971 -89349376 + L1MCc LINE L1 4100 4233 -2708 262 200 114 14 chr4 112978971 112979041 -89349306 + L1ME1 LINE L1 5758 5834 -332 307 292 97 21 chr4 112979041 112979185 -89349162 + LTR68 LTR ERV1 8 162 -578 899 236 123 10 chr4 112979612 112979921 -89348426 + L1ME1 LINE L1 5823 6166 0 263 58 519 0 chr4 112980683 112980735 -89347612 + MADE1 DNA Mariner 1 79 -1 248 369 45 23 chr4 112980736 112980912 -89347435 + MIR SINE MIR 82 261 -1 216 0 0 0 chr4 112982447 112982471 -89345876 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 363 44 0 0 chr4 112982470 112982515 -89345832 + (TG)n Simple_repeat Simple_repeat 2 46 0 260 241 10 32 chr4 112982923 112983013 -89345334 - MIR SINE MIR -91 117 36 429 20 0 0 chr4 112983463 112983513 -89344834 + (TA)n Simple_repeat Simple_repeat 1 50 0 276 242 62 16 chr4 112983571 112983699 -89344648 - L1MC4a LINE L1 -1793 6015 5882 2745 212 35 23 chr4 112983701 112984320 -89344027 + LTR27 LTR ERV1 3 629 -7 256 267 127 12 chr4 112984500 112984665 -89343682 - HAL1b LINE L1 -481 867 684 847 303 60 0 chr4 112988034 112988252 -89340095 - MIR SINE MIR -21 241 11 586 316 101 45 chr4 112988855 112989816 -89338531 - L1 LINE L1 -2496 3650 2602 269 292 11 0 chr4 112989967 112990056 -89338291 + (TA)n Simple_repeat Simple_repeat 2 91 0 292 165 11 44 chr4 112990207 112990298 -89338049 + (TTTA)n Simple_repeat Simple_repeat 2 89 0 1095 266 64 40 chr4 112990946 112991292 -89337055 + MLT1E LTR MaLR 123 476 -117 1608 264 126 20 chr4 112991329 112991696 -89336651 - L1MC4 LINE L1 -935 7107 6653 213 39 0 0 chr4 112991696 112991722 -89336625 + (TA)n Simple_repeat Simple_repeat 2 27 0 1608 264 126 20 chr4 112991722 112991942 -89336405 - L1MC4 LINE L1 -1389 6653 6458 264 217 36 36 chr4 112992676 112992759 -89335588 + GA-rich Low_complexity Low_complexity 3 85 0 25 0 0 0 chr4 112992873 112992898 -89335449 + AT_rich Low_complexity Low_complexity 1 25 0 232 217 0 0 chr4 112993503 112993549 -89334798 + L1MEc LINE L1 1321 1366 -5030 459 308 128 21 chr4 112994833 112995067 -89333280 - MIR SINE MIR -3 259 1 754 217 55 50 chr4 112995561 112995974 -89332373 - MER39 LTR ERV1 0 707 114 6043 95 6 0 chr4 112996211 112997095 -89331252 - L1PA7 LINE L1 -2160 3986 3098 * 6587 83 15 1 chr4 112997091 112999121 -89329226 + L1PA7 LINE L1 4009 6154 0 744 207 71 0 chr4 112999178 112999450 -89328897 - MER33 DNA MER1_type 0 363 33 477 288 31 19 chr4 113000102 113000262 -89328085 + MLT1K LTR MaLR 323 484 -104 305 374 46 24 chr4 113000456 113000828 -89327519 + L1ME LINE L1 65 444 -5626 367 325 141 44 chr4 113001092 113001390 -89326957 + HAL1 LINE L1 1427 1753 -754 432 82 0 0 chr4 113001415 113001476 -89326871 + (CA)n Simple_repeat Simple_repeat 2 62 0 221 288 68 0 chr4 113002680 113002739 -89325608 - MIR SINE MIR 0 262 200 628 296 90 3 chr4 113002927 113003126 -89325221 - MIR SINE MIR -33 229 15 226 289 26 0 chr4 113003868 113003944 -89324403 + GA-rich Low_complexity Low_complexity 2 79 0 194 300 71 14 chr4 113004753 113004823 -89323524 + MIR SINE MIR 76 149 -113 425 224 6 24 chr4 113004981 113005151 -89323196 + CT-rich Low_complexity Low_complexity 2 168 0 303 261 23 11 chr4 113005162 113005250 -89323097 + CT-rich Low_complexity Low_complexity 3 91 0 429 206 5 43 chr4 113005263 113005447 -89322900 + CT-rich Low_complexity Low_complexity 2 178 0 200 226 38 38 chr4 113005455 113005508 -89322839 - L2 LINE L2 -12 3301 3249 598 344 60 51 chr4 113005632 113006065 -89322282 + L2 LINE L2 2836 3272 0 1401 129 0 23 chr4 113006200 113006417 -89321930 + THE1B LTR MaLR 1 212 -152 4179 13 0 0 chr4 113007086 113007564 -89320783 + L1PA2 LINE L1 5676 6153 -2 24 0 0 0 chr4 113007645 113007669 -89320678 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 113007869 113007890 -89320457 + AT_rich Low_complexity Low_complexity 1 21 0 510 47 56 19 chr4 113008146 113008253 -89320094 + (TCTA)n Simple_repeat Simple_repeat 3 113 0 1339 185 52 7 chr4 113008259 113008529 -89319818 - MLT2C1 LTR ERVL -62 335 54 2440 176 8 8 chr4 113008531 113009002 -89319345 - L1MA4 LINE L1 -41 6259 5789 1398 112 68 16 chr4 113009025 113009275 -89319072 + L1 LINE L1 4691 4953 -1193 298 153 68 0 chr4 113009272 113009331 -89319016 + L1MA4 LINE L1 6038 6100 -200 * 2714 135 20 2 chr4 113009333 113009778 -89318569 - L1MA4 LINE L1 -519 5786 5334 2199 107 0 0 chr4 113009778 113010078 -89318269 - AluSg SINE Alu -8 302 3 840 132 0 0 chr4 113010078 113010207 -89318140 - AluSp/q SINE Alu -16 297 169 7266 209 14 153 chr4 113010210 113010599 -89317748 - L1MA4 LINE L1 -824 5322 4880 540 0 0 0 chr4 113010599 113010659 -89317688 + (CA)n Simple_repeat Simple_repeat 1 60 0 7266 209 14 153 chr4 113010659 113010905 -89317442 - L1MA4 LINE L1 -1266 4880 4601 216 0 0 0 chr4 113010905 113010929 -89317418 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 943 156 0 18 chr4 113010929 113011096 -89317251 + AluSg/x SINE Alu 135 298 -12 7266 209 14 153 chr4 113011096 113013409 -89314938 - L1MA4 LINE L1 -1543 4603 2640 2098 255 92 2 chr4 113013405 113014259 -89314088 - L1M4 LINE L1 -984 5162 4232 * 867 290 47 35 chr4 113014268 113014781 -89313566 - L1MCc LINE L1 -3244 3697 3179 2090 286 64 41 chr4 113014830 113016532 -89311815 - L1MCc LINE L1 -4887 1536 51 30 59 0 0 chr4 113016561 113016612 -89311735 + AT_rich Low_complexity Low_complexity 1 51 0 511 298 59 41 chr4 113016728 113017390 -89310957 - L1MEc LINE L1 -3317 2898 2225 29 28 0 0 chr4 113017501 113017537 -89310810 + AT_rich Low_complexity Low_complexity 1 36 0 430 319 91 14 chr4 113017575 113017939 -89310408 - L1MEc LINE L1 -4573 1823 1432 334 234 0 0 chr4 113017967 113018031 -89310316 + MLT1D LTR MaLR 1 64 -441 7321 148 53 7 chr4 113018264 113019497 -89308850 + THE1-int LTR MaLR 5 1294 -286 1096 237 19 34 chr4 113019497 113019849 -89308498 + MLT2B3 LTR ERVL 211 554 0 2197 144 0 45 chr4 113020814 113021188 -89307159 - THE1-int LTR MaLR -348 1232 876 * 2210 247 42 26 chr4 113021183 113021879 -89306468 + L1M4 LINE L1 4656 5362 -784 20281 38 6 1 chr4 113021992 113025116 -89303231 - L1PA4 LINE L1 -144 6011 2875 595 65 0 0 chr4 113025116 113025193 -89303154 + L1PA4 LINE L1 2789 2865 -3281 1303 210 43 47 chr4 113025755 113026055 -89302292 + AluJo SINE Alu 1 299 -13 254 235 176 0 chr4 113026959 113027044 -89301303 - MIR SINE MIR -66 196 97 268 271 107 31 chr4 113027211 113027404 -89300943 - L1MC/D LINE L1 -586 5656 5450 239 321 93 21 chr4 113027464 113027701 -89300646 - L1MC/D LINE L1 -987 5159 4906 2303 261 30 42 chr4 113027854 113028635 -89299712 - L1ME1 LINE L1 -15 6151 5379 6128 196 11 5 chr4 113028635 113030678 -89297669 - L1PA15 LINE L1 -5 7598 5534 4304 289 71 36 chr4 113030681 113032815 -89295532 - L1PA15 LINE L1 -4837 2744 2 2707 237 47 6 chr4 113032811 113033645 -89294702 - L1ME1 LINE L1 -756 5390 4523 * 487 314 84 52 chr4 113033674 113034139 -89294208 - L1MCc LINE L1 -5920 503 24 205 148 19 19 chr4 113034347 113034401 -89293946 + (TA)n Simple_repeat Simple_repeat 1 54 0 1489 197 39 0 chr4 113034461 113034766 -89293581 - L1MB5 LINE L1 -10 6164 5848 228 336 35 26 chr4 113034863 113034979 -89293368 - MER20B DNA MER1_type -661 122 6 579 270 116 20 chr4 113034987 113035584 -89292763 - L1ME1 LINE L1 -2759 3387 2734 1142 321 59 11 chr4 113035614 113036403 -89291944 - L2 LINE L2 0 3313 2424 184 290 129 0 chr4 113036431 113036493 -89291854 - L2 LINE L2 -1007 2307 2238 264 273 55 86 chr4 113037499 113037627 -89290720 + MER5A DNA MER1_type 42 165 -24 723 281 138 20 chr4 113038512 113038861 -89289486 + Charlie2a DNA MER1_type 37 426 -2356 275 250 216 6 chr4 113038916 113039092 -89289255 + Charlie2a DNA MER1_type 770 982 -1880 223 279 29 15 chr4 113039271 113039339 -89289008 + L2 LINE L2 3241 3309 -4 180 172 16 109 chr4 113039566 113039630 -89288717 - L2 LINE L2 -67 3246 3189 34 0 0 0 chr4 113042176 113042210 -89286137 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr4 113042424 113042449 -89285898 + AT_rich Low_complexity Low_complexity 1 25 0 237 224 0 0 chr4 113045816 113045874 -89282473 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 468 258 68 81 chr4 113048994 113049242 -89279105 - L3 LINE CR1 -135 1442 1198 646 297 163 21 chr4 113051945 113052658 -89275689 - L2 LINE L2 0 3313 2496 2735 207 44 5 chr4 113054512 113055106 -89273241 + L1MB5 LINE L1 5529 6145 -29 1352 258 25 8 chr4 113055123 113055491 -89272856 + MLT1A2 LTR MaLR 1 374 0 23 0 0 0 chr4 113055820 113055843 -89272504 + AT_rich Low_complexity Low_complexity 1 23 0 707 289 24 9 chr4 113057624 113057835 -89270512 - MIR SINE MIR -5 257 44 22 56 0 0 chr4 113058036 113058072 -89270275 + AT_rich Low_complexity Low_complexity 1 36 0 254 337 36 0 chr4 113058654 113058737 -89269610 - MIR SINE MIR -55 207 122 843 249 113 36 chr4 113058903 113059265 -89269082 - MLT1B LTR MaLR 0 390 1 190 352 0 0 chr4 113059844 113059898 -89268449 - L2 LINE L2 -2 3311 3258 312 297 55 42 chr4 113060278 113060443 -89267904 - MLT1J LTR MaLR -320 191 25 1057 125 0 0 chr4 113060450 113060633 -89267714 - AluYa5 SINE Alu 0 314 132 27 0 0 0 chr4 113061747 113061774 -89266573 + AT_rich Low_complexity Low_complexity 1 27 0 387 311 186 41 chr4 113061797 113062505 -89265842 + HAL1 LINE L1 124 934 -1573 228 160 40 0 chr4 113062524 113062574 -89265773 - L1MC4 LINE L1 -1351 6691 6640 23 33 0 0 chr4 113062664 113062694 -89265653 + AT_rich Low_complexity Low_complexity 1 30 0 815 305 35 9 chr4 113062698 113063013 -89265334 + HAL1 LINE L1 1904 2226 -281 352 238 129 38 chr4 113063032 113063242 -89265105 + HAL1 LINE L1 2278 2506 -1 183 222 0 0 chr4 113063527 113063563 -89264784 - MIR SINE MIR -34 228 193 372 211 44 0 chr4 113063616 113063706 -89264641 - MLT1J LTR MaLR -2 509 416 1705 192 0 0 chr4 113063714 113064026 -89264321 + AluJb SINE Alu 1 312 0 1708 157 6 29 chr4 113064043 113064355 -89263992 + AluJo SINE Alu 5 309 -3 708 219 0 0 chr4 113064460 113064624 -89263723 + GA-rich Low_complexity Low_complexity 3 166 0 270 160 0 0 chr4 113064642 113064692 -89263655 + GA-rich Low_complexity Low_complexity 2 51 0 669 169 14 159 chr4 113064959 113065255 -89263092 + Tigger6 DNA MER2_type 1305 1557 -40 3698 253 118 30 chr4 113065852 113067617 -89260730 - L1M4 LINE L1 -2116 4030 2110 25 83 0 0 chr4 113067777 113067837 -89260510 + AT_rich Low_complexity Low_complexity 1 60 0 409 331 43 27 chr4 113068364 113068548 -89259799 - L1ME LINE L1 -475 5695 5509 755 242 80 12 chr4 113068566 113069075 -89259272 - L1ME LINE L1 -711 5453 4912 1125 229 4 29 chr4 113069124 113069369 -89258978 - MSTD LTR MaLR -137 259 21 1930 191 83 40 chr4 113069369 113069839 -89258508 - LTR2B LTR ERV1 0 490 1 1651 202 41 67 chr4 113070685 113071146 -89257201 - MER31B LTR ERV1 0 466 18 1674 252 36 15 chr4 113071244 113071776 -89256571 + L1MC4 LINE L1 7381 7923 -119 243 204 0 0 chr4 113071788 113071842 -89256505 + GA-rich Low_complexity Low_complexity 1 54 0 710 320 28 12 chr4 113072129 113072379 -89255968 - MIR SINE MIR -6 256 3 180 0 0 0 chr4 113073703 113073723 -89254624 + (T)n Simple_repeat Simple_repeat 1 20 0 759 87 87 0 chr4 113073740 113073855 -89254492 + MER85 DNA T2_type 15 139 0 188 356 96 7 chr4 113073924 113074059 -89254288 - MIR3 SINE MIR -24 184 38 226 235 42 118 chr4 113074658 113074777 -89253570 - MIR SINE MIR -49 213 104 223 284 0 15 chr4 113075402 113075469 -89252878 + GA-rich Low_complexity Low_complexity 2 67 0 518 224 111 30 chr4 113079011 113079228 -89249119 - MIR SINE MIR -21 241 8 2294 185 51 7 chr4 113080047 113080480 -89247867 + LTR47A LTR ERVL 1 452 0 415 237 68 8 chr4 113080500 113080618 -89247729 - LTR67 LTR ERVL -1 556 432 9669 211 48 23 chr4 113081407 113084399 -89243948 + L1P4 LINE L1 2528 5608 -558 195 42 0 0 chr4 113084399 113084423 -89243924 + (CCCTAA)n Simple_repeat Simple_repeat 5 28 0 1243 252 74 3 chr4 113084427 113084737 -89243610 - MLT1A1 LTR MaLR -30 335 4 1369 275 51 13 chr4 113084745 113085375 -89242972 + L1MB7 LINE L1 2171 2824 -3322 853 314 39 46 chr4 113085384 113085832 -89242515 + L1M3b LINE L1 766 1285 -5752 3465 258 45 43 chr4 113085874 113088881 -89239466 + L1M3b LINE L1 1721 4383 -2723 625 235 0 0 chr4 113088898 113089051 -89239296 + L1MA10 LINE L1 6180 6332 -2 2871 257 54 34 chr4 113089068 113089083 -89239264 + L1MB7 LINE L1 2812 2825 -3321 1158 33 0 39 chr4 113089083 113089236 -89239111 + L1PA7 LINE L1 6008 6154 0 2871 257 54 34 chr4 113089236 113090502 -89237845 + L1MB7 LINE L1 2825 4119 -2027 7090 141 10 10 chr4 113090510 113091994 -89236353 - L1MA1 LINE L1 0 6302 4815 2087 123 0 3 chr4 113091994 113092294 -89236053 - AluSg SINE Alu -9 301 3 7090 141 10 10 chr4 113092294 113092832 -89235515 - L1MA1 LINE L1 -1487 4815 4278 3942 223 51 9 chr4 113092828 113094394 -89233953 + L1MB7 LINE L1 4098 5759 -425 * 2201 137 25 8 chr4 113094394 113094752 -89233595 + THE1B LTR MaLR 1 364 0 3942 223 51 9 chr4 113094752 113095177 -89233170 + L1MB7 LINE L1 5759 6165 -19 460 186 18 35 chr4 113095569 113095682 -89232665 + L1ME3A LINE L1 5122 5232 -914 * 4616 191 20 32 chr4 113095678 113096532 -89231815 - L1MC1 LINE L1 -248 7504 6687 1968 152 0 3 chr4 113096532 113096835 -89231512 - AluSx SINE Alu -10 302 1 4616 191 20 32 chr4 113096835 113097612 -89230735 - L1MC1 LINE L1 -1065 6687 5902 235 238 151 48 chr4 113097645 113097771 -89230576 + MLT1J LTR MaLR 370 508 -3 536 281 55 65 chr4 113099439 113099837 -89228510 + L1ME3A LINE L1 5296 5689 -485 1119 229 68 76 chr4 113100000 113100079 -89228268 + L1ME3A LINE L1 5664 5742 -428 2549 102 16 16 chr4 113100079 113100452 -89227895 - THE1C LTR MaLR 0 375 3 9743 111 34 40 chr4 113100454 113102044 -89226303 - THE1C-int LTR MaLR 0 1580 1 2220 142 19 16 chr4 113102044 113102418 -89225929 - THE1C LTR MaLR 0 375 1 1119 229 68 76 chr4 113102418 113102845 -89225502 + L1ME3A LINE L1 5741 6170 0 6810 121 25 7 chr4 113103069 113104337 -89224010 - L1MA2 LINE L1 0 6304 5017 3121 210 33 38 chr4 113104336 113105314 -89223033 - L1MC1 LINE L1 -3152 4413 3441 * 12097 189 43 14 chr4 113105314 113107632 -89220715 - L1M1 LINE L1 -5166 2399 15 23 24 0 24 chr4 113108583 113108605 -89219742 + AT_rich Low_complexity Low_complexity 1 23 -17 2101 123 0 3 chr4 113108605 113108906 -89219441 - AluSq SINE Alu -13 300 1 23 24 0 24 chr4 113108906 113108924 -89219423 + AT_rich Low_complexity Low_complexity 23 40 0 22 0 0 0 chr4 113109306 113109328 -89219019 + AT_rich Low_complexity Low_complexity 1 22 0 3614 166 89 3 chr4 113109403 113110078 -89218269 - MER44D DNA MER2_type 0 605 1 26 30 0 0 chr4 113110813 113110846 -89217501 + AT_rich Low_complexity Low_complexity 1 33 0 235 239 37 97 chr4 113111293 113111427 -89216920 + MIR SINE MIR 87 212 -50 200 238 0 0 chr4 113111870 113111912 -89216435 + T-rich Low_complexity Low_complexity 1 42 0 586 210 76 6 chr4 113113092 113113249 -89215098 + L1MD3 LINE L1 7820 7987 -8 1224 187 51 10 chr4 113113781 113113995 -89214352 + MER33 DNA MER1_type 18 249 -2336 2384 88 0 10 chr4 113113995 113114303 -89214044 - AluSc SINE Alu -4 305 1 1224 187 51 10 chr4 113114303 113114382 -89213965 + MER33 DNA MER1_type 249 323 -1 26 0 0 0 chr4 113115298 113115324 -89213023 + AT_rich Low_complexity Low_complexity 1 26 0 949 246 117 33 chr4 113115431 113115858 -89212489 - LTR40c LTR ERVL -2 463 1 495 0 0 0 chr4 113115946 113116001 -89212346 + (TA)n Simple_repeat Simple_repeat 1 55 0 3643 240 49 45 chr4 113116008 113117395 -89210952 - L1MDb LINE L1 -3027 4538 3145 2126 77 47 3 chr4 113117395 113117693 -89210654 - AluY SINE Alu 0 311 1 3643 240 49 45 chr4 113117693 113117973 -89210374 - L1MDb LINE L1 -4420 3145 2868 1453 191 78 9 chr4 113117971 113118405 -89209942 + L1MA7 LINE L1 3119 3582 -2564 * 5671 180 23 21 chr4 113118400 113120579 -89207768 + L1MA7 LINE L1 4094 6271 -20 350 246 62 31 chr4 113120984 113121114 -89207233 - L1 LINE L1 -1623 4523 4390 760 292 69 0 chr4 113121189 113121449 -89206898 - LTR16A1 LTR ERVL -2 455 178 299 247 82 44 chr4 113121684 113121842 -89206505 - L1MDb LINE L1 -5128 2440 2277 12680 128 35 4 chr4 113122648 113124638 -89203709 + Tigger1 DNA MER2_type 367 2418 0 433 291 75 24 chr4 113125605 113125859 -89202488 + L1MC5 LINE L1 7635 7901 -60 22 70 0 0 chr4 113126896 113126939 -89201408 + AT_rich Low_complexity Low_complexity 1 43 0 28 86 0 0 chr4 113126987 113127057 -89201290 + AT_rich Low_complexity Low_complexity 1 70 0 1580 147 91 53 chr4 113128723 113129084 -89199263 - THE1C LTR MaLR 0 375 1 338 266 13 0 chr4 113129343 113129422 -89198925 + HERVL LTR ERVL 1554 1633 -4021 28 61 0 0 chr4 113129459 113129508 -89198839 + AT_rich Low_complexity Low_complexity 1 49 0 583 272 107 36 chr4 113129779 113130189 -89198158 + L1ME3 LINE L1 5524 5961 -201 1029 164 0 0 chr4 113130445 113130604 -89197743 + MSTC LTR MaLR 270 428 0 3232 119 82 0 chr4 113130652 113131174 -89197173 + MER34B LTR ERV1 1 565 0 23 0 0 0 chr4 113131735 113131758 -89196589 + AT_rich Low_complexity Low_complexity 1 23 0 355 405 23 0 chr4 113131760 113131891 -89196456 + L2 LINE L2 3136 3269 -3 359 224 31 10 chr4 113131999 113132097 -89196250 - MIR SINE MIR 0 262 163 6943 60 3 2 chr4 113132612 113133854 -89194493 + L1PA7 LINE L1 4915 6153 -1 21 0 0 0 chr4 113135610 113135631 -89192716 + AT_rich Low_complexity Low_complexity 1 21 0 1342 184 34 8 chr4 113136518 113136785 -89191562 - L1MB1 LINE L1 0 6168 5895 2768 194 34 27 chr4 113136905 113137678 -89190669 - L1MB1 LINE L1 -285 5904 5126 442 286 53 37 chr4 113137789 113137978 -89190369 - L2 LINE L2 -18 3295 3104 2040 75 11 25 chr4 113138951 113139230 -89189117 - AluSc SINE Alu -8 301 27 300 301 39 10 chr4 113139381 113139484 -89188863 + MLT1I LTR MaLR 3 108 -301 212 347 112 0 chr4 113140872 113140970 -89187377 - MIR SINE MIR -125 137 29 23 0 0 0 chr4 113141148 113141171 -89187176 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 113142409 113142437 -89185910 + AT_rich Low_complexity Low_complexity 1 28 0 446 322 131 17 chr4 113142534 113142832 -89185515 + L2 LINE L2 2198 2529 -785 393 313 40 30 chr4 113142947 113143145 -89185202 + MIR SINE MIR 49 248 -14 217 332 133 66 chr4 113143218 113143414 -89184933 - L2 LINE L2 -125 3147 2939 193 57 57 0 chr4 113144098 113144133 -89184214 + (TA)n Simple_repeat Simple_repeat 2 38 0 1061 293 144 2 chr4 113144546 113145381 -89182966 - HAL1 LINE L1 -1176 1331 332 547 207 36 0 chr4 113145414 113145525 -89182822 - HAL1 LINE L1 -2242 265 151 1620 227 197 4 chr4 113145882 113146419 -89181928 - L1MB1 LINE L1 -1073 5073 4433 325 166 34 0 chr4 113146529 113146602 -89181745 + L1P4 LINE L1 5614 5689 -476 319 298 33 11 chr4 113146601 113146797 -89181550 + L1ME2 LINE L1 2179 2376 -3839 * 1385 221 0 3 chr4 113146843 113147155 -89181192 + AluY SINE Alu 1 311 0 3908 267 108 16 chr4 113147179 113148674 -89179673 + L1ME2 LINE L1 2414 4103 -2112 186 103 0 0 chr4 113148674 113148703 -89179644 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 3908 267 108 16 chr4 113148703 113149002 -89179345 + L1ME2 LINE L1 4103 4373 -1842 290 79 0 0 chr4 113149004 113149042 -89179305 - FRAM SINE Alu -66 100 63 5285 148 21 3 chr4 113149042 113150060 -89178287 + L1PB4 LINE L1 5121 6156 0 35 71 0 0 chr4 113150060 113150130 -89178217 + AT_rich Low_complexity Low_complexity 1 70 0 3075 236 88 27 chr4 113150481 113151198 -89177149 + L1ME2 LINE L1 4468 5139 -1264 228 111 0 0 chr4 113151198 113151234 -89177113 + (TA)n Simple_repeat Simple_repeat 2 37 0 3075 236 88 27 chr4 113151234 113152147 -89176200 + L1ME2 LINE L1 5139 6400 -3 21 0 0 0 chr4 113154333 113154354 -89173993 + AT_rich Low_complexity Low_complexity 1 21 0 640 322 90 4 chr4 113154644 113154877 -89173470 - MIR SINE MIR -2 260 8 216 0 0 0 chr4 113154963 113154987 -89173360 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 557 196 0 0 chr4 113155192 113155294 -89173053 - AluJ/FLAM SINE Alu -210 102 1 397 171 12 37 chr4 113155354 113155430 -89172917 - MIR SINE MIR -114 148 75 624 189 91 21 chr4 113155430 113155573 -89172774 - MER5A DNA MER1_type -1 188 36 184 222 56 83 chr4 113155630 113155702 -89172645 - L2 LINE L2 -261 3052 2983 244 274 0 0 chr4 113155766 113155828 -89172519 + L1ME2 LINE L1 5994 6055 -109 471 260 12 95 chr4 113156723 113156891 -89171456 + MIR SINE MIR 75 227 -35 5999 190 102 72 chr4 113157449 113158483 -89169864 + L1MC3 LINE L1 6037 7226 -559 279 233 70 23 chr4 113158483 113158569 -89169778 + MLT1F1 LTR MaLR 35 124 -443 5999 190 102 72 chr4 113158569 113159144 -89169203 + L1MC3 LINE L1 7226 7782 -3 433 316 0 0 chr4 113159705 113159822 -89168525 + MER69A DNA AcHobo 7 123 -54 2052 129 6 18 chr4 113160243 113160576 -89167771 - L1PA15 LINE L1 -1 6164 5836 26 0 0 0 chr4 113160610 113160636 -89167711 + AT_rich Low_complexity Low_complexity 1 26 0 315 357 123 7 chr4 113160848 113161002 -89167345 - L2 LINE L2 -23 3249 3078 1389 92 5 4 chr4 113161287 113161495 -89166852 - L1M1 LINE L1 -361 5790 5606 * 3774 194 5 1 chr4 113161494 113162268 -89166079 + L1 LINE L1 2506 3282 -2864 2791 166 15 7 chr4 113162555 113163014 -89165333 - LTR45B LTR ERV1 -2 487 25 1411 121 40 0 chr4 113163014 113163213 -89165134 + AluSc SINE Alu 82 288 -21 243 128 0 0 chr4 113163223 113163262 -89165085 - LTR45B LTR ERV1 -447 42 4 26 0 0 0 chr4 113163442 113163468 -89164879 + AT_rich Low_complexity Low_complexity 1 26 0 198 353 0 15 chr4 113164179 113164247 -89164100 - L2 LINE L2 -4 3268 3202 1617 184 90 24 chr4 113164443 113164910 -89163437 - Charlie2 DNA MER1_type -475 2387 1890 2065 119 52 35 chr4 113165287 113165656 -89162691 - THE1C LTR MaLR 0 375 1 5667 110 5 6 chr4 113165656 113166464 -89161883 - THE1C-int LTR MaLR 0 1580 774 244 114 0 0 chr4 113166464 113166499 -89161848 - THE1A LTR MaLR -320 35 1 405 254 167 0 chr4 113166765 113166903 -89161444 - Charlie2 DNA MER1_type -2452 330 170 209 250 158 0 chr4 113167404 113167480 -89160867 - L2 LINE L2 0 3272 3185 * 987 248 62 7 chr4 113167478 113167752 -89160595 - L2 LINE L2 -661 2653 2365 204 205 0 0 chr4 113168030 113168069 -89160278 + (TG)n Simple_repeat Simple_repeat 2 40 0 30 27 0 0 chr4 113168855 113168892 -89159455 + AT_rich Low_complexity Low_complexity 1 37 0 5856 203 40 7 chr4 113169317 113170674 -89157673 + L1MA5 LINE L1 2761 4162 -1984 1429 144 70 14 chr4 113170646 113170931 -89157416 + L1MA4 LINE L1 5978 6278 -22 * 6160 164 46 8 chr4 113170948 113172269 -89156078 + L1MA5 LINE L1 4147 5415 -885 180 0 0 0 chr4 113172269 113172289 -89156058 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6160 164 46 8 chr4 113172289 113172576 -89155771 + L1MA5 LINE L1 5415 5689 -611 234 0 0 0 chr4 113172576 113172602 -89155745 + (TA)n Simple_repeat Simple_repeat 2 27 0 6160 164 46 8 chr4 113172602 113173064 -89155283 + L1MA5 LINE L1 5689 6290 -10 353 232 62 9 chr4 113173064 113173176 -89155171 + Charlie7 DNA MER1_type 572 689 -1923 210 91 0 0 chr4 113174555 113174588 -89153759 + (T)n Simple_repeat Simple_repeat 1 33 0 7798 17 0 0 chr4 113174592 113176084 -89152263 - L1PA2 LINE L1 -4 6151 4660 14486 23 0 1 chr4 113176084 113177809 -89150538 + L1PA2 LINE L1 2933 4656 -1490 2051 127 130 23 chr4 113178302 113178687 -89149660 - MSTA LTR MaLR -2 426 1 1521 92 4 18 chr4 113178687 113178914 -89149433 - MSTA-int LTR MaLR 0 1580 1357 1625 88 169 0 chr4 113179007 113179268 -89149079 - AluSq SINE Alu -8 305 1 326 376 31 12 chr4 113179688 113179850 -89148497 - MIR SINE MIR -93 169 5 188 67 33 0 chr4 113179936 113179966 -89148381 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr4 113180553 113180574 -89147773 + AT_rich Low_complexity Low_complexity 1 21 0 1753 154 28 0 chr4 113181369 113181655 -89146692 + AluSx SINE Alu 4 297 -15 2282 94 0 10 chr4 113181737 113182045 -89146302 + AluY SINE Alu 1 305 -6 2205 96 0 3 chr4 113182147 113182458 -89145889 - AluSg SINE Alu 0 310 1 393 309 36 96 chr4 113183020 113183321 -89145026 + L2 LINE L2 2567 2849 -465 616 298 87 30 chr4 113183321 113183620 -89144727 - LTR16A LTR ERVL -52 398 83 396 188 62 54 chr4 113184042 113184154 -89144193 - HERV16 LTR ERVL -329 4667 4555 1525 330 78 38 chr4 113184211 113185316 -89143031 - HERVL LTR ERVL -729 4925 3775 378 245 109 20 chr4 113185372 113185519 -89142828 - L2 LINE L2 0 3313 3154 2044 136 7 3 chr4 113187330 113187640 -89140707 + AluSx SINE Alu 1 311 -1 208 219 0 0 chr4 113187675 113187716 -89140631 + (TG)n Simple_repeat Simple_repeat 2 42 0 2232 80 28 0 chr4 113187951 113188239 -89140108 - AluY SINE Alu -15 296 1 2674 71 0 3 chr4 113188290 113188641 -89139706 + L1PB1 LINE L1 5801 6150 -1 700 302 76 54 chr4 113188794 113189371 -89138976 - MLT1L LTR MaLR -18 597 8 1271 115 0 0 chr4 113189836 113190018 -89138329 - L1P5 LINE L1 -459 5697 5516 2222 156 17 15 chr4 113190019 113190430 -89137917 + L1PB4 LINE L1 5745 6156 0 233 357 91 0 chr4 113190561 113190704 -89137643 - MIR SINE MIR -17 245 90 1821 272 32 14 chr4 113190764 113191393 -89136954 + L1ME1 LINE L1 3697 4336 -1810 2405 234 93 18 chr4 113191468 113192128 -89136219 + L1ME1 LINE L1 4459 5069 -1097 306 0 0 0 chr4 113192128 113192162 -89136185 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1364 53 0 0 chr4 113192162 113192332 -89136015 - L1PA3 LINE L1 -10 6145 5976 2405 234 93 18 chr4 113192332 113193006 -89135341 + L1ME1 LINE L1 5068 5896 -270 543 201 12 95 chr4 113193013 113193182 -89135165 + L1MA10 LINE L1 6172 6326 -8 360 64 0 0 chr4 113193602 113193649 -89134698 + (CA)n Simple_repeat Simple_repeat 2 48 0 239 283 0 0 chr4 113193650 113193710 -89134637 + L1MC4 LINE L1 6652 6711 -1331 638 117 97 0 chr4 113194124 113194227 -89134120 - MER85 DNA T2_type -26 113 1 594 291 121 36 chr4 113194356 113194720 -89133627 + MLT1J1 LTR MaLR 28 422 -24 300 154 0 0 chr4 113194805 113194857 -89133490 + (TA)n Simple_repeat Simple_repeat 1 52 0 977 268 84 54 chr4 113196058 113196191 -89132156 + MLT1J2 LTR MaLR 37 164 -286 2069 182 5 35 chr4 113196191 113196593 -89131754 + MLT1B LTR MaLR 1 390 0 977 268 84 54 chr4 113196593 113196851 -89131496 + MLT1J2 LTR MaLR 164 440 -10 21 36 0 0 chr4 113197448 113197476 -89130871 + AT_rich Low_complexity Low_complexity 1 28 0 1680 184 41 46 chr4 113198124 113198516 -89129831 - MLT1B LTR MaLR 0 390 1 21 0 0 0 chr4 113198597 113198618 -89129729 + AT_rich Low_complexity Low_complexity 1 21 0 438 150 0 0 chr4 113200076 113200156 -89128191 - L1MA10 LINE L1 -5 6329 6250 230 305 0 0 chr4 113200156 113200215 -89128132 + L2 LINE L2 2723 2781 -533 240 346 59 29 chr4 113200256 113200392 -89127955 + L2 LINE L2 2940 3079 -234 525 294 37 37 chr4 113202316 113202503 -89125844 + MIR SINE MIR 75 261 -1 2804 19 0 0 chr4 113202730 113203039 -89125308 - AluYa5 SINE Alu -2 309 1 7996 140 52 4 chr4 113203529 113204866 -89123481 + Tigger1 DNA MER2_type 1 1401 -1017 3851 202 117 25 chr4 113204866 113205888 -89122459 - MER52C LTR ERV1 0 1278 162 4567 142 35 1 chr4 113206165 113206906 -89121441 + Tigger1 DNA MER2_type 1400 2165 -253 323 221 51 139 chr4 113206910 113207068 -89121279 + MER21B LTR ERV1 706 849 -14 240 358 53 48 chr4 113207091 113207278 -89121069 + L2 LINE L2 3126 3313 0 21 0 0 0 chr4 113208525 113208546 -89119801 + AT_rich Low_complexity Low_complexity 1 21 0 185 254 0 136 chr4 113208670 113208780 -89119567 + L2 LINE L2 3218 3312 -1 628 219 31 79 chr4 113208869 113209097 -89119250 + MLT1C LTR MaLR 23 239 -228 446 165 21 21 chr4 113209099 113209196 -89119151 + L1PA16 LINE L1 6060 6156 -10 1567 34 0 0 chr4 113209391 113209588 -89118759 + AluY SINE Alu 106 302 0 845 219 11 33 chr4 113209601 113209664 -89118683 + MLT1C LTR MaLR 287 350 -117 2312 89 3 3 chr4 113209664 113209967 -89118380 + AluSc SINE Alu 1 303 -6 845 219 11 33 chr4 113209967 113210086 -89118261 + MLT1C LTR MaLR 350 465 -2 659 262 106 11 chr4 113210283 113210519 -89117828 + MIR SINE MIR 8 262 0 7328 175 151 35 chr4 113211077 113212650 -89115697 + MER52A LTR ERV1 1 1755 0 1538 153 3 80 chr4 113213850 113214150 -89114197 - AluJo SINE Alu -35 277 1 457 270 0 9 chr4 113215063 113215174 -89113173 + MIR3 SINE MIR 86 195 -13 28 0 0 0 chr4 113215763 113215791 -89112556 + AT_rich Low_complexity Low_complexity 1 28 0 1232 57 88 0 chr4 113216350 113216509 -89111838 + AluY SINE Alu 123 295 -16 266 294 42 25 chr4 113219472 113219591 -89108756 + MLT1K LTR MaLR 148 268 -320 410 236 115 87 chr4 113219658 113219866 -89108481 + MLT1K LTR MaLR 366 579 -9 381 283 147 17 chr4 113220401 113220578 -89107769 - L2 LINE L2 -12 3301 3102 817 325 45 41 chr4 113220711 113221151 -89107196 - L2 LINE L2 -491 2823 2382 450 257 161 65 chr4 113224054 113224377 -89103970 - MLT1H LTR MaLR -73 476 123 198 103 0 0 chr4 113225230 113225259 -89103088 + (TG)n Simple_repeat Simple_repeat 1 29 0 571 74 0 12 chr4 113225353 113225434 -89102913 - MADE1 DNA Mariner 0 80 1 487 46 58 0 chr4 113226601 113226688 -89101659 + CT-rich Low_complexity Low_complexity 1 92 0 183 311 40 27 chr4 113226839 113226913 -89101434 + L2 LINE L2 3151 3225 -47 31 0 0 0 chr4 113227132 113227163 -89101184 + AT_rich Low_complexity Low_complexity 1 31 0 33 43 0 0 chr4 113228565 113228612 -89099735 + AT_rich Low_complexity Low_complexity 1 47 0 1950 129 31 0 chr4 113229346 113229633 -89098714 - AluSg SINE Alu -14 296 1 467 303 52 0 chr4 113231681 113231836 -89096511 + MLT1J2 LTR MaLR 270 432 -18 27 29 0 0 chr4 113234561 113234595 -89093752 + AT_rich Low_complexity Low_complexity 1 34 0 1726 148 2 156 chr4 113235272 113235703 -89092644 - MLT1A1 LTR MaLR 0 365 1 315 247 11 22 chr4 113235715 113235804 -89092543 - MIR SINE MIR -3 259 172 356 298 101 19 chr4 113237802 113237960 -89090387 - MIR SINE MIR -26 236 66 42782 33 21 1 chr4 113238954 113244968 -89083379 + L1HS LINE L1 4 6139 -16 331 19 39 19 chr4 113244968 113245020 -89083327 + (TAAAA)n Simple_repeat Simple_repeat 4 56 0 1214 66 0 7 chr4 113248185 113248357 -89079990 - AluSc SINE Alu 0 300 130 222 247 55 68 chr4 113248443 113248589 -89079758 + L2 LINE L2 3161 3304 -9 372 358 40 14 chr4 113248833 113248981 -89079366 + L2 LINE L2 3119 3270 -2 260 348 132 32 chr4 113249880 113250282 -89078065 + L3 LINE CR1 703 1144 -433 302 373 109 23 chr4 113250556 113250859 -89077488 + L2 LINE L2 2301 2629 -685 217 384 51 78 chr4 113250998 113251448 -89076899 + L2 LINE L2 2832 3269 -3 42314 61 1 0 chr4 113251793 113257934 -89070413 + L1PA4 LINE L1 7 6153 -2 5154 147 37 47 chr4 113258023 113259295 -89069052 - L1MA3 LINE L1 -101 6204 4916 196 351 0 26 chr4 113259662 113259739 -89068608 + L2 LINE L2 3231 3305 -8 253 312 65 78 chr4 113259774 113259928 -89068419 - L2 LINE L2 0 3272 3121 1076 246 117 37 chr4 113260182 113261758 -89066589 - L1ME2 LINE L1 -174 5924 4198 844 290 106 28 chr4 113261750 113262147 -89066200 + L1ME LINE L1 198 625 -5445 * 274 198 62 42 chr4 113262156 113262252 -89066095 - L1ME2 LINE L1 -5451 619 522 1834 141 100 29 chr4 113263265 113263605 -89064742 - THE1B LTR MaLR 0 364 1 1878 115 95 10 chr4 113264373 113264744 -89063603 - LTR7 LTR ERV1 0 450 1 758 271 25 5 chr4 113265556 113265755 -89062592 - MIR SINE MIR -8 254 52 231 88 0 0 chr4 113266509 113266543 -89061804 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1739 181 7 7 chr4 113266751 113267050 -89061297 + AluJb SINE Alu 1 299 -13 747 145 45 8 chr4 113267054 113267308 -89061039 + GA-rich Low_complexity Low_complexity 1 263 0 2174 132 24 16 chr4 113267453 113267823 -89060524 - L1PA15 LINE L1 0 6165 5793 2619 134 14 11 chr4 113268463 113268909 -89059438 - L1MC1 LINE L1 -13 6320 5874 524 204 120 30 chr4 113269722 113269840 -89058507 - L1ME3A LINE L1 -2 6979 6840 2496 146 28 23 chr4 113269840 113270272 -89058075 + Tigger2a DNA MER2_type 1 434 0 524 204 120 30 chr4 113270272 113270320 -89058027 - L1ME3A LINE L1 -141 6840 6798 951 273 119 24 chr4 113270373 113271111 -89057236 - L1ME3A LINE L1 -306 6667 5858 910 245 65 21 chr4 113271182 113271521 -89056826 - L1ME3A LINE L1 -1266 5691 5338 346 221 69 12 chr4 113271524 113271730 -89056617 - MLT1G1 LTR MaLR -3 592 336 859 275 133 20 chr4 113271783 113272430 -89055917 - L1ME3A LINE L1 -2981 3976 3257 414 322 37 19 chr4 113272595 113272772 -89055575 - L1ME3A LINE L1 -4113 3025 2822 21 0 0 0 chr4 113272772 113272793 -89055554 + AT_rich Low_complexity Low_complexity 1 21 0 414 322 37 19 chr4 113272793 113272809 -89055538 - L1ME3A LINE L1 -4316 2822 2808 3575 122 26 10 chr4 113272823 113273405 -89054942 - L1PA13 LINE L1 -6 6157 5567 711 200 32 7 chr4 113273405 113273560 -89054787 + L1P LINE L1 4939 5097 -1049 499 303 70 35 chr4 113273704 113274515 -89053832 - L1ME3A LINE L1 -4573 2565 1726 253 269 0 32 chr4 113274611 113274704 -89053643 - L1ME3A LINE L1 -5453 1406 1317 39467 64 3 1 chr4 113274742 113280791 -89047556 + L1PA5 LINE L1 11 6071 -83 2313 96 141 172 chr4 113280891 113281896 -89046451 + pTR5 LTR ERV1 1150 2437 -1 1855 169 41 17 chr4 113281896 113282329 -89046018 - MLT2A2 LTR ERVL -100 454 1 561 187 116 157 chr4 113282349 113282466 -89045881 + L1ME LINE L1 5488 5608 -558 521 258 0 23 chr4 113282466 113282594 -89045753 + FLAM_A SINE Alu 1 125 -8 561 187 116 157 chr4 113282594 113282813 -89045534 + L1ME LINE L1 5608 5810 -356 341 253 0 0 chr4 113282814 113282897 -89045450 - L1M4 LINE L1 -1792 4354 4272 584 256 34 49 chr4 113282944 113283024 -89045323 + L1MA10 LINE L1 5867 5947 -387 2243 101 3 0 chr4 113283024 113283321 -89045026 + AluSp SINE Alu 1 298 -15 584 256 34 49 chr4 113283321 113283558 -89044789 + L1MA10 LINE L1 5947 6328 -6 2420 29 0 0 chr4 113284875 113285152 -89043195 + AluYb8 SINE Alu 41 317 -1 194 0 0 37 chr4 113285156 113285183 -89043164 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 13428 187 26 28 chr4 113285293 113289093 -89039254 + L1PA16 LINE L1 1308 5108 -1689 2222 122 0 10 chr4 113289093 113289404 -89038943 + AluSx SINE Alu 1 308 -4 13428 187 26 28 chr4 113289404 113289738 -89038609 + L1PA16 LINE L1 5108 5441 -1356 436 188 23 23 chr4 113289742 113289875 -89038472 + L1PA13 LINE L1 4345 4477 -1669 5528 124 22 8 chr4 113289913 113291252 -89037095 + L1PA13 LINE L1 4809 6163 0 301 277 85 11 chr4 113291284 113291378 -89036969 - MER63A DNA MER1_type 0 210 110 359 217 9 0 chr4 113291429 113291535 -89036812 + (TCCA)n Simple_repeat Simple_repeat 1 107 0 286 244 47 12 chr4 113291613 113291699 -89036648 - MER63A DNA MER1_type 0 89 1 25 0 0 0 chr4 113293036 113293061 -89035286 + AT_rich Low_complexity Low_complexity 1 25 0 3411 173 2 5 chr4 113293682 113294306 -89034041 + L1PA16 LINE L1 6190 6811 -6 396 320 78 27 chr4 113294630 113294849 -89033498 + MIR SINE MIR 12 241 -21 35 24 0 0 chr4 113295212 113295254 -89033093 + AT_rich Low_complexity Low_complexity 1 42 0 512 283 136 27 chr4 113296431 113296615 -89031732 + MIR SINE MIR 58 261 -1 238 242 143 0 chr4 113296674 113296765 -89031582 - HAL1b LINE L1 -58 1290 1187 687 207 94 55 chr4 113296822 113297097 -89031250 + Charlie1 DNA MER1_type 185 470 -2291 291 194 15 0 chr4 113297128 113297195 -89031152 + Charlie1 DNA MER1_type 2688 2755 -6 2116 94 13 30 chr4 113297282 113297580 -89030767 + AluY SINE Alu 1 293 -18 189 0 0 0 chr4 113297580 113297601 -89030746 + (TA)n Simple_repeat Simple_repeat 2 22 0 258 216 0 0 chr4 113298196 113298247 -89030100 + Charlie4 DNA MER1_type 1 51 -1910 781 234 43 30 chr4 113298490 113298725 -89029622 + MSTD LTR MaLR 1 238 -158 986 148 36 46 chr4 113298744 113298775 -89029572 + MSTD LTR MaLR 204 234 -162 2118 114 3 7 chr4 113298775 113299065 -89029282 - AluSx SINE Alu -23 289 1 986 148 36 46 chr4 113299065 113299262 -89029085 + MSTD LTR MaLR 234 396 0 468 288 103 47 chr4 113299915 113300234 -89028113 - MLT1J LTR MaLR -31 480 144 1769 254 33 25 chr4 113300239 113300751 -89027596 + MLT1E2 LTR MaLR 2 517 -109 1958 133 37 37 chr4 113301170 113301545 -89026802 - THE1C LTR MaLR 0 375 1 1790 166 47 9 chr4 113301571 113301915 -89026432 - THE1B LTR MaLR -7 357 1 589 306 32 27 chr4 113301916 113302135 -89026212 + MIR SINE MIR 19 238 -24 2106 126 3 3 chr4 113305566 113305867 -89022480 + AluSx SINE Alu 1 301 -11 234 0 0 0 chr4 113305867 113305893 -89022454 + (TA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr4 113306083 113306104 -89022243 + AT_rich Low_complexity Low_complexity 1 21 0 3577 264 138 25 chr4 113306257 113307449 -89020898 - L2 LINE L2 -80 3233 2177 2735 7 0 0 chr4 113307449 113307746 -89020601 + AluYa5 SINE Alu 1 297 -14 2842 6 0 3 chr4 113307746 113308057 -89020290 + AluY SINE Alu 1 311 0 3577 264 138 25 chr4 113308057 113308366 -89019981 - L2 LINE L2 -1135 2178 1561 240 209 85 85 chr4 113308369 113308498 -89019849 - L2 LINE L2 -2996 318 190 975 197 10 5 chr4 113311279 113311477 -89016870 - MLT1B LTR MaLR 0 390 192 2108 182 141 31 chr4 113311496 113311717 -89016630 - MER44D DNA MER2_type -1886 601 406 2086 124 53 34 chr4 113311717 113312073 -89016274 - THE1B LTR MaLR -1 363 1 2108 182 141 31 chr4 113312073 113312341 -89016006 - MER44D DNA MER2_type -2081 406 3 784 204 0 17 chr4 113312346 113312522 -89015825 - MLT1B LTR MaLR -217 173 1 338 308 171 12 chr4 113313057 113313297 -89015050 + L2 LINE L2 2105 2382 -932 350 239 142 39 chr4 113313330 113313423 -89014924 + MIR SINE MIR 36 118 -144 189 74 0 0 chr4 113313423 113313450 -89014897 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 350 239 142 39 chr4 113313450 113313511 -89014836 + MIR SINE MIR 118 206 -56 7542 159 5 1 chr4 113313555 113314784 -89013563 + L1PA14 LINE L1 1 1234 -6347 242 160 80 0 chr4 113314784 113314834 -89013513 - LTR3b LTR ERVK 0 500 447 1749 151 18 39 chr4 113314834 113314945 -89013402 - LTR3b LTR ERVK -17 483 371 20641 38 3 0 chr4 113314945 113318258 -89010089 - L1PA5 LINE L1 -6 6148 2829 1749 151 18 39 chr4 113318258 113318478 -89009869 - LTR3b LTR ERVK -129 371 159 11383 132 16 14 chr4 113318488 113320400 -89007947 + L1PA14 LINE L1 1227 3147 -4437 9741 172 8 44 chr4 113320403 113323736 -89004611 + L1PA14 LINE L1 4171 7590 -9 4847 129 3 63 chr4 113322886 113323757 -89004590 + L1PA13 LINE L1 6783 7601 0 * 236 351 0 0 chr4 113323746 113323823 -89004524 + GA-rich Low_complexity Low_complexity 5 81 0 * 25 31 0 0 chr4 113325254 113325286 -89003061 + AT_rich Low_complexity Low_complexity 1 32 0 197 109 73 0 chr4 113325629 113325684 -89002663 + (TA)n Simple_repeat Simple_repeat 2 60 0 * 357 131 0 0 chr4 113325671 113325732 -89002615 + (CA)n Simple_repeat Simple_repeat 2 62 0 1109 206 44 110 chr4 113325734 113325830 -89002517 + MER2 DNA MER2_type 1 102 -243 604 212 17 0 chr4 113325830 113325948 -89002399 + FLAM_A SINE Alu 1 120 -13 1109 206 44 110 chr4 113325948 113326216 -89002131 + MER2 DNA MER2_type 102 341 -4 23 0 0 0 chr4 113326333 113326356 -89001991 + AT_rich Low_complexity Low_complexity 1 23 0 412 316 15 15 chr4 113326690 113326823 -89001524 - L2 LINE L2 -6 3307 3175 994 196 90 46 chr4 113327035 113327395 -89000952 - MSTC LTR MaLR 0 428 1 915 253 76 3 chr4 113327609 113327910 -89000437 + MER5C DNA MER1_type 2 324 0 331 239 171 17 chr4 113327943 113328060 -89000287 - L2 LINE L2 -14 3299 3165 2018 123 7 7 chr4 113328106 113328423 -88999924 + AluSc SINE Alu 1 309 0 25 0 0 0 chr4 113328794 113328819 -88999528 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr4 113328987 113329024 -88999323 + AT_rich Low_complexity Low_complexity 1 37 0 240 275 28 0 chr4 113329831 113329975 -88998372 + MIR SINE MIR 152 262 0 277 260 203 32 chr4 113330019 113330142 -88998205 - MIR3 SINE MIR -63 145 2 246 196 0 22 chr4 113330479 113330525 -88997822 - L2 LINE L2 -4 3309 3265 2084 96 36 0 chr4 113331403 113331684 -88996663 + AluSx SINE Alu 1 291 -21 243 0 0 0 chr4 113331687 113331714 -88996633 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 750 309 61 58 chr4 113331997 113332576 -88995771 + L2 LINE L2 2738 3313 0 2374 79 0 7 chr4 113333008 113333311 -88995036 - AluY SINE Alu -10 301 1 249 33 0 0 chr4 113333343 113333373 -88994974 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 945 296 35 48 chr4 113333461 113334127 -88994220 - L2 LINE L2 -86 3227 2536 331 390 0 13 chr4 113334172 113334326 -88994021 + MIR SINE MIR 1 152 -110 32096 107 13 57 chr4 113334340 113336984 -88991363 + L1PA7 LINE L1 3 2763 -3391 200 31 62 0 chr4 113336984 113337016 -88991331 + A-rich Low_complexity Low_complexity 2 35 0 32096 107 13 57 chr4 113337016 113340819 -88987528 + L1PA7 LINE L1 2763 6151 -3 867 263 56 59 chr4 113340880 113341271 -88987076 - MLT1J2 LTR MaLR -59 391 2 1356 245 50 12 chr4 113341473 113341897 -88986450 - L1MB8 LINE L1 -30 6148 5709 369 172 30 15 chr4 113343328 113343462 -88984885 + CT-rich Low_complexity Low_complexity 1 136 0 1003 157 81 20 chr4 113345557 113345755 -88982592 + MSTD LTR MaLR 187 396 0 556 291 90 54 chr4 113345924 113346458 -88981889 - L1ME2 LINE L1 -283 5881 5317 2318 91 0 16 chr4 113346817 113347125 -88981222 - AluSq SINE Alu -10 303 1 416 263 251 21 chr4 113347256 113347674 -88980673 - L1ME2 LINE L1 -818 5328 4815 682 318 54 20 chr4 113347829 113348418 -88979929 - L1ME2 LINE L1 -1430 4716 4108 944 297 77 84 chr4 113348463 113349717 -88978630 - L1ME2 LINE L1 -2163 3983 2739 1520 196 16 32 chr4 113349755 113350071 -88978276 - AluJb SINE Alu -1 311 1 219 163 0 23 chr4 113350137 113350180 -88978167 + (TG)n Simple_repeat Simple_repeat 1 42 0 338 218 35 23 chr4 113350180 113350267 -88978080 - L1MC4 LINE L1 -1340 6702 6615 190 293 52 26 chr4 113350399 113350515 -88977832 - L2 LINE L2 -5 3308 3190 534 257 146 0 chr4 113350571 113350742 -88977605 - MIR SINE MIR 0 262 67 311 281 237 0 chr4 113352405 113352519 -88975828 + MIR SINE MIR 48 188 -74 396 236 34 0 chr4 113353882 113353971 -88974376 - MER94 DNA DNA -42 92 1 565 248 43 151 chr4 113353971 113354059 -88974288 - MIR SINE MIR -14 248 152 1472 199 7 18 chr4 113354059 113354340 -88974007 + AluJo SINE Alu 4 281 -31 565 248 43 151 chr4 113354340 113354529 -88973818 - MIR SINE MIR -110 152 1 3084 164 37 2 chr4 113355649 113356192 -88972155 - MER68 LTR ERV1 0 562 1 917 188 35 5 chr4 113356464 113356666 -88971681 + MER3 DNA MER1_type 2 209 0 226 303 81 10 chr4 113357996 113358095 -88970252 + MER103 DNA DNA 15 120 -46 1902 132 54 48 chr4 113358464 113358836 -88969511 + THE1C LTR MaLR 2 375 0 9951 124 35 7 chr4 113358836 113360372 -88967975 + THE1C-int LTR MaLR 1 1580 0 1797 121 95 17 chr4 113360372 113360720 -88967627 + THE1C LTR MaLR 1 375 0 678 276 83 101 chr4 113360835 113361281 -88967066 + MLT1J1 LTR MaLR 1 438 -8 24 77 0 0 chr4 113361328 113361380 -88966967 + AT_rich Low_complexity Low_complexity 1 52 0 205 283 79 56 chr4 113361420 113361538 -88966809 + MIR SINE MIR 7 124 -92 3124 244 28 15 chr4 113361667 113362718 -88965629 + L1MD2 LINE L1 2721 3784 -2362 1623 165 53 23 chr4 113362718 113363076 -88965271 + AluJb SINE Alu 1 367 0 811 138 11 23 chr4 113363076 113363250 -88965097 + GA-rich Low_complexity Low_complexity 3 174 0 1508 214 87 22 chr4 113363250 113363699 -88964648 + L1MD2 LINE L1 3776 4253 -1893 373 285 71 37 chr4 113363699 113363957 -88964390 + MER109 Unknown Unknown 62 653 -1779 2643 171 31 74 chr4 113364076 113364779 -88963568 + MER109 Unknown Unknown 663 1335 -1097 529 251 70 53 chr4 113364780 113365079 -88963268 - MER109 Unknown Unknown -1111 1321 1018 228 216 0 0 chr4 113365217 113365268 -88963079 + (TA)n Simple_repeat Simple_repeat 2 52 0 644 168 0 9 chr4 113365268 113365381 -88962966 - AluSq/x SINE Alu -179 134 23 31 26 0 0 chr4 113365782 113365820 -88962527 + AT_rich Low_complexity Low_complexity 1 38 0 4689 197 46 61 chr4 113365840 113367266 -88961081 + L1MD2 LINE L1 4266 5667 -692 1966 103 3 75 chr4 113367266 113367587 -88960760 + AluSc SINE Alu 2 299 -10 4689 197 46 61 chr4 113367587 113368244 -88960103 + L1MD2 LINE L1 5667 6332 -27 2100 112 7 36 chr4 113368250 113368555 -88959792 - AluSq SINE Alu -17 296 1 363 306 0 0 chr4 113368649 113368734 -88959613 + MER81 DNA DNA 1 85 -29 2899 201 18 60 chr4 113368734 113368935 -88959412 + L1 LINE L1 4226 4434 -1712 2041 131 0 3 chr4 113368935 113369218 -88959129 + AluSx SINE Alu 1 282 -30 2899 201 18 60 chr4 113369218 113369815 -88958532 + L1 LINE L1 4434 4990 -1156 206 292 62 0 chr4 113369968 113370033 -88958314 + L2 LINE L2 3143 3211 -61 409 321 80 6 chr4 113370911 113371073 -88957274 + MIR SINE MIR 57 230 -32 204 40 0 0 chr4 113371634 113371659 -88956688 + (GA)n Simple_repeat Simple_repeat 2 26 0 198 359 0 109 chr4 113372680 113372900 -88955447 + L2 LINE L2 2859 3054 -218 2174 113 0 0 chr4 113373133 113373424 -88954923 + AluSg SINE Alu 1 291 -19 331 327 0 9 chr4 113374300 113374410 -88953937 + (TGG)n Simple_repeat Simple_repeat 1 109 0 518 289 6 28 chr4 113374447 113374678 -88953669 + (TGG)n Simple_repeat Simple_repeat 1 225 0 774 206 10 70 chr4 113378576 113378775 -88949572 + MER5A DNA MER1_type 3 189 0 344 300 71 0 chr4 113379568 113379708 -88948639 + MIR SINE MIR 57 206 -56 526 333 11 11 chr4 113381182 113381356 -88946991 + MIR3 SINE MIR 13 186 -22 328 273 36 12 chr4 113382399 113382564 -88945783 + (TCTCTG)n Simple_repeat Simple_repeat 2 170 0 1288 191 36 24 chr4 113382621 113382872 -88945475 - AluJo SINE Alu -13 299 46 329 306 66 71 chr4 113383184 113383367 -88944980 + MIR SINE MIR 24 205 -57 1267 145 37 14 chr4 113383436 113383650 -88944697 + MER20 DNA MER1_type 1 219 0 395 292 93 81 chr4 113383918 113384315 -88944032 - L2 LINE L2 0 3313 2912 1284 228 32 56 chr4 113384647 113384985 -88943362 + MLT1C LTR MaLR 94 423 -44 1291 119 0 0 chr4 113384995 113385180 -88943167 + AluSg/x SINE Alu 117 301 -8 1221 210 60 105 chr4 113385190 113385657 -88942690 - MLT1D LTR MaLR -54 451 6 312 313 66 30 chr4 113386372 113386570 -88941777 + L1M4 LINE L1 1408 1612 -4930 1504 181 50 31 chr4 113386606 113386926 -88941421 - MLT1A1 LTR MaLR -7 358 33 1777 151 7 0 chr4 113386929 113387208 -88941139 - AluSx SINE Alu -20 292 12 846 281 47 54 chr4 113387833 113388150 -88940197 - L2 LINE L2 -397 2917 2603 1815 261 137 82 chr4 113389832 113389870 -88938477 + L2 LINE L2 1869 1903 -1410 1921 131 17 140 chr4 113389870 113390264 -88938083 + MLT2D LTR ERVL 1 329 -85 273 98 0 0 chr4 113390264 113390305 -88938042 + (TG)n Simple_repeat Simple_repeat 1 41 0 1921 131 17 140 chr4 113390305 113390382 -88937965 + MLT2D LTR ERVL 329 414 0 1815 261 137 82 chr4 113390382 113390674 -88937673 + L2 LINE L2 1903 2177 -1136 568 77 13 0 chr4 113390674 113390752 -88937595 + MADE1 DNA Mariner 2 80 0 1815 261 137 82 chr4 113390752 113391017 -88937330 + L2 LINE L2 2177 2426 -887 1985 125 3 52 chr4 113391017 113391345 -88937002 + AluSx SINE Alu 1 312 0 216 0 0 0 chr4 113391347 113391371 -88936976 + (TA)n Simple_repeat Simple_repeat 2 25 0 1815 261 137 82 chr4 113391371 113392109 -88936238 + L2 LINE L2 2426 3282 -31 24 32 0 0 chr4 113392116 113392147 -88936200 + AT_rich Low_complexity Low_complexity 1 31 0 435 154 19 96 chr4 113393621 113393725 -88934622 + MER21B LTR ERV1 12 107 -756 2538 198 61 62 chr4 113393807 113394613 -88933734 + MER21B LTR ERV1 22 862 -1 2082 94 93 11 chr4 113395589 113395954 -88932393 + LTR7 LTR ERV1 1 448 -2 4887 91 37 0 chr4 113396340 113397036 -88931311 - LTR30 LTR ERV1 0 722 1 188 214 0 0 chr4 113397115 113397157 -88931190 + L3 LINE CR1 1334 1375 -202 315 0 0 0 chr4 113397678 113397713 -88930634 + (TG)n Simple_repeat Simple_repeat 2 36 0 42437 51 5 0 chr4 113397841 113403967 -88924380 + L1PA4 LINE L1 2 6155 0 31 44 0 0 chr4 113404110 113404155 -88924192 + AT_rich Low_complexity Low_complexity 1 45 0 185 337 11 11 chr4 113405231 113405326 -88923021 + L2 LINE L2 2772 2866 -448 2560 223 119 43 chr4 113405673 113406597 -88921750 + L1MC4a LINE L1 6815 7808 0 1073 261 4 0 chr4 113406703 113406933 -88921414 + MIR SINE MIR 32 262 0 326 218 0 0 chr4 113407180 113407235 -88921112 - AluJ/monomer SINE Alu -246 55 1 2178 200 42 0 chr4 113407241 113407746 -88920601 - L1M4c LINE L1 -4929 1455 930 240 345 42 0 chr4 113407748 113407867 -88920480 - Tigger8 DNA MER2_type -528 138 15 22 0 0 0 chr4 113408595 113408617 -88919730 + AT_rich Low_complexity Low_complexity 1 22 0 1915 220 78 31 chr4 113408686 113409172 -88919175 + L1M4c LINE L1 18 526 -5858 1245 199 21 7 chr4 113409135 113409426 -88918921 - L1M4c LINE L1 -5080 1304 1010 * 8388 155 36 28 chr4 113409433 113410339 -88918008 + L1M4c LINE L1 533 1463 -4921 2008 140 3 0 chr4 113410339 113410625 -88917722 + AluSx SINE Alu 1 287 -25 8388 155 36 28 chr4 113410625 113411452 -88916895 + L1M4c LINE L1 1463 2281 -4103 2763 161 14 16 chr4 113411459 113411970 -88916377 + L1MB2 LINE L1 5662 6171 0 23 78 0 0 chr4 113412136 113412187 -88916160 + AT_rich Low_complexity Low_complexity 1 51 0 262 246 0 18 chr4 113413172 113413229 -88915118 - L2 LINE L2 0 3272 3217 290 200 168 42 chr4 113413881 113413976 -88914371 - MER117 DNA MER1_type -72 125 19 269 373 84 7 chr4 113414974 113415116 -88913231 - MIR3 SINE MIR -17 191 39 258 336 8 46 chr4 113416363 113416494 -88911853 + MIR SINE MIR 1 126 -136 1032 173 123 75 chr4 113416734 113416910 -88911437 + THE1C LTR MaLR 1 167 -208 276 30 0 0 chr4 113416910 113416943 -88911404 + (TC)n Simple_repeat Simple_repeat 1 33 0 1032 173 123 75 chr4 113416943 113417124 -88911223 + THE1C LTR MaLR 167 375 0 641 349 86 35 chr4 113417253 113417816 -88910531 + L2 LINE L2 2701 3296 -17 184 209 0 47 chr4 113417783 113417826 -88910521 + MIR SINE MIR 219 259 -3 * 264 124 38 143 chr4 113418094 113418199 -88910148 - MLT1F LTR MaLR 0 542 449 294 233 144 41 chr4 113418378 113418524 -88909823 - MLT1H LTR MaLR -386 163 3 509 99 12 0 chr4 113418968 113419049 -88909298 + L1PA16 LINE L1 6075 6156 -10 377 319 48 31 chr4 113419430 113419659 -88908688 + MLT1L LTR MaLR 350 582 -33 569 320 100 12 chr4 113419802 113420061 -88908286 + LTR33 LTR ERVL 1 282 -239 1112 198 37 29 chr4 113420135 113420378 -88907969 - MER52A LTR ERV1 0 1755 1511 * 6059 176 31 68 chr4 113420367 113421651 -88906696 + MER52A LTR ERV1 520 1755 0 633 248 7 0 chr4 113421653 113421790 -88906557 + LTR33 LTR ERVL 377 514 -7 259 312 208 7 chr4 113421848 113422002 -88906345 + MIR SINE MIR 72 256 -6 2342 93 0 7 chr4 113422109 113422410 -88905937 - AluSq SINE Alu -14 299 1 310 303 30 10 chr4 113422445 113422544 -88905803 - MER117 DNA MER1_type -22 175 75 496 344 44 9 chr4 113423488 113423715 -88904632 - MIR SINE MIR -10 252 18 2151 102 0 36 chr4 113423725 113424029 -88904318 + AluSx SINE Alu 1 293 -19 320 338 76 38 chr4 113424239 113424396 -88903951 - L2 LINE L2 -1 3271 3109 2790 191 9 17 chr4 113424584 113425164 -88903183 - L1MB7 LINE L1 -10 6174 5600 4473 141 9 21 chr4 113425178 113425989 -88902358 - L1MA4 LINE L1 -2 6298 5498 1247 136 34 0 chr4 113425989 113426273 -88902074 + L1MA4 LINE L1 5195 5485 -745 1605 205 39 25 chr4 113426280 113426607 -88901740 - L1MB7 LINE L1 -581 5603 5282 1493 164 164 0 chr4 113426607 113426905 -88901442 - MER7A DNA MER2_type -1 345 1 1605 205 39 25 chr4 113426905 113427215 -88901132 - L1MB7 LINE L1 -902 5282 4961 697 201 35 23 chr4 113427444 113427618 -88900729 - L1MB7 LINE L1 -1194 4952 4777 457 359 101 31 chr4 113427849 113428264 -88900083 - L2 LINE L2 -527 2787 2344 237 315 56 73 chr4 113428279 113428457 -88899890 - MIR SINE MIR -21 241 67 28 29 0 0 chr4 113429185 113429220 -88899127 + AT_rich Low_complexity Low_complexity 1 35 0 2016 134 0 0 chr4 113429333 113429623 -88898724 - AluSg SINE Alu -20 290 1 1770 131 55 7 chr4 113429917 113430192 -88898155 + AluSg SINE Alu 1 288 -22 532 160 0 46 chr4 113430208 113430339 -88898008 + (TG)n Simple_repeat Simple_repeat 2 126 0 567 275 46 61 chr4 113431158 113431389 -88896958 + MIR SINE MIR 5 233 -29 1980 143 3 0 chr4 113431389 113431683 -88896664 + AluSx SINE Alu 1 295 -17 567 275 46 61 chr4 113431683 113431713 -88896634 + MIR SINE MIR 233 262 0 361 251 204 6 chr4 113432139 113432306 -88896041 + MIR SINE MIR 57 256 -6 231 36 0 0 chr4 113432804 113432832 -88895515 + (CA)n Simple_repeat Simple_repeat 2 29 0 201 39 0 0 chr4 113434066 113434092 -88894255 + (CA)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr4 113434099 113434121 -88894226 + AT_rich Low_complexity Low_complexity 1 22 0 299 351 7 4 chr4 113434399 113434554 -88893793 + L1 LINE L1 3589 3744 -2402 186 258 0 0 chr4 113435576 113435638 -88892709 + (TATG)n Simple_repeat Simple_repeat 2 63 0 187 68 0 91 chr4 113435895 113435939 -88892408 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 242 341 10 9 chr4 113436065 113436192 -88892155 + CT-rich Low_complexity Low_complexity 2 211 0 259 133 40 27 chr4 113439526 113439601 -88888746 + (TAA)n Simple_repeat Simple_repeat 1 76 0 439 298 88 12 chr4 113439793 113439964 -88888383 + MER5A DNA MER1_type 6 189 0 191 330 39 48 chr4 113440094 113440197 -88888150 - L2 LINE L2 -73 3199 3098 299 127 0 18 chr4 113440552 113440607 -88887740 + (TG)n Simple_repeat Simple_repeat 1 54 0 282 323 98 6 chr4 113442826 113442990 -88885357 + MIR SINE MIR 72 250 -12 419 247 182 52 chr4 113443081 113443312 -88885035 + MIR SINE MIR 2 262 0 543 281 11 45 chr4 113443485 113443663 -88884684 + MIR3 SINE MIR 1 172 -36 259 139 0 0 chr4 113444709 113444745 -88883602 - tRNA-Arg-AGG tRNA tRNA -40 36 1 364 266 21 0 chr4 113445290 113445384 -88882963 + L2 LINE L2 3177 3272 0 292 250 296 9 chr4 113445381 113445489 -88882858 - MER5A DNA MER1_type -30 159 21 * 1894 187 141 5 chr4 113445551 113445962 -88882385 - MLT1C LTR MaLR 0 467 1 29 28 0 0 chr4 113446111 113446147 -88882200 + AT_rich Low_complexity Low_complexity 1 36 0 194 374 136 34 chr4 113446469 113446616 -88881731 - L2 LINE L2 -4 3268 3107 253 198 25 0 chr4 113446717 113446798 -88881549 + CT-rich Low_complexity Low_complexity 2 84 0 413 307 8 0 chr4 113446938 113447065 -88881282 + MIR SINE MIR 102 229 -33 2161 221 26 65 chr4 113448408 113449110 -88879237 + L1ME3A LINE L1 5497 6170 0 196 326 178 7 chr4 113449138 113449273 -88879074 + MIR SINE MIR 61 218 -44 1730 163 40 0 chr4 113450218 113450544 -88877803 + MER44D DNA MER2_type 1 609 0 1520 186 35 11 chr4 113450872 113451194 -88877153 - MER61B LTR ERV1 -1 424 1 429 291 113 73 chr4 113451210 113451788 -88876559 - L1ME LINE L1 -265 5856 5255 321 317 85 58 chr4 113451908 113452271 -88876076 - L1ME LINE L1 -1166 4980 4608 339 25 0 0 chr4 113452272 113452312 -88876035 + (TG)n Simple_repeat Simple_repeat 1 40 0 1890 153 76 13 chr4 113453226 113453799 -88874548 + MER39 LTR ERV1 1 706 -1 24 0 0 0 chr4 113454201 113454225 -88874122 + AT_rich Low_complexity Low_complexity 1 24 0 741 122 0 16 chr4 113456483 113456606 -88871741 - FRAM SINE Alu -6 170 50 33 25 0 0 chr4 113457209 113457249 -88871098 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr4 113457458 113457481 -88870866 + AT_rich Low_complexity Low_complexity 1 23 0 2095 141 98 18 chr4 113459289 113459685 -88868662 + MSTA LTR MaLR 1 428 0 210 271 68 0 chr4 113460029 113460088 -88868259 - MIR SINE MIR -61 147 85 21 36 0 0 chr4 113460214 113460242 -88868105 + AT_rich Low_complexity Low_complexity 1 28 0 59 27 0 0 chr4 113460596 113460669 -88867678 + AT_rich Low_complexity Low_complexity 1 73 0 635 206 44 31 chr4 113461406 113461566 -88866781 - MIR SINE MIR -1 261 100 210 311 93 50 chr4 113461577 113461738 -88866609 - MIR SINE MIR -34 228 61 * 1354 271 302 13 chr4 113461684 113462567 -88865780 - L2 LINE L2 -297 3016 1787 729 222 54 5 chr4 113463200 113463421 -88864926 + L1 LINE L1 3268 3499 -2647 921 199 11 0 chr4 113463427 113463603 -88864744 + AluYa8 SINE Alu 121 298 -12 8033 189 33 20 chr4 113463603 113466226 -88862121 + L1PA16 LINE L1 3518 6166 0 2382 111 26 3 chr4 113466880 113467232 -88861115 - THE1B LTR MaLR -4 360 1 10188 98 19 62 chr4 113467232 113468883 -88859464 - THE1B-int LTR MaLR 0 1580 1 2655 112 0 3 chr4 113468883 113469248 -88859099 - THE1B LTR MaLR 0 364 1 268 262 221 20 chr4 113469905 113470054 -88858293 + MIR SINE MIR 36 214 -48 26 0 0 0 chr4 113470141 113470167 -88858180 + AT_rich Low_complexity Low_complexity 1 26 0 1793 148 29 29 chr4 113470167 113470477 -88857870 + AluJb SINE Alu 1 310 -2 964 262 140 17 chr4 113471378 113471920 -88856427 + L2 LINE L2 2627 3218 -95 1922 106 51 17 chr4 113471949 113472241 -88856106 + AluSx SINE Alu 7 308 -4 320 219 8 0 chr4 113473788 113473911 -88854436 + (TA)n Simple_repeat Simple_repeat 1 124 0 22 0 0 0 chr4 113474304 113474326 -88854021 + AT_rich Low_complexity Low_complexity 1 22 0 884 214 25 0 chr4 113475063 113475222 -88853125 + MER58A DNA MER1_type 3 165 0 27 0 0 0 chr4 113475524 113475551 -88852796 + AT_rich Low_complexity Low_complexity 1 27 0 189 331 137 29 chr4 113475737 113475876 -88852471 - L2 LINE L2 0 3272 3119 2317 109 10 6 chr4 113476424 113476735 -88851612 + AluSx SINE Alu 1 312 0 1025 191 41 0 chr4 113476845 113477039 -88851308 - MER3 DNA MER1_type -2 207 6 22 94 0 0 chr4 113477451 113477515 -88850832 + AT_rich Low_complexity Low_complexity 1 64 0 293 373 36 48 chr4 113477581 113477833 -88850514 - L2 LINE L2 -658 2656 2408 211 399 68 14 chr4 113477976 113478124 -88850223 + L2 LINE L2 2872 3027 -245 586 267 48 0 chr4 113478685 113478850 -88849497 - MIR SINE MIR 0 262 90 186 43 0 0 chr4 113479237 113479260 -88849087 + (GA)n Simple_repeat Simple_repeat 2 24 0 1689 166 3 47 chr4 113479426 113479746 -88848601 + AluJb SINE Alu 1 306 -6 36 0 0 0 chr4 113479779 113479815 -88848532 + AT_rich Low_complexity Low_complexity 1 36 0 1882 252 63 54 chr4 113480014 113480787 -88847560 + MER20B DNA MER1_type 2 781 -2 25 51 0 0 chr4 113482069 113482108 -88846239 + AT_rich Low_complexity Low_complexity 1 39 0 2061 113 17 14 chr4 113483510 113483802 -88844545 - AluSx SINE Alu -13 299 7 25 31 0 0 chr4 113484017 113484049 -88844298 + AT_rich Low_complexity Low_complexity 1 32 0 200 255 43 0 chr4 113484157 113484204 -88844143 + MIR SINE MIR 72 120 -142 835 48 0 48 chr4 113484204 113484329 -88844018 - SVA Other Other 0 1386 1268 1482 48 27 0 chr4 113484329 113484516 -88843831 - LTR5 LTR ERVK -639 330 139 298 87 22 0 chr4 113484516 113484562 -88843785 - LTR5 LTR ERVK -784 185 139 7593 60 7 99 chr4 113484562 113485736 -88842611 - SVA Other Other -264 1122 57 234 0 0 0 chr4 113485737 113485763 -88842584 + (GGGAGA)n Simple_repeat Simple_repeat 2 27 0 261 361 0 10 chr4 113486103 113486200 -88842147 - L2 LINE L2 -50 3222 3127 266 265 162 37 chr4 113486490 113486626 -88841721 - MIR SINE MIR -105 157 5 424 226 68 17 chr4 113487501 113487678 -88840669 - HsTC2 DNA Tc2 -11 1887 1702 * 1053 233 67 17 chr4 113487675 113487975 -88840372 - HsTC2 DNA Tc2 -1583 315 1 1179 256 161 21 chr4 113488901 113489593 -88838754 + L2 LINE L2 2531 3313 0 379 291 45 0 chr4 113491198 113491308 -88837039 + L2 LINE L2 3199 3313 0 2419 69 3 3 chr4 113491586 113491891 -88836456 + AluSx SINE Alu 1 305 -7 321 319 175 18 chr4 113492773 113493115 -88835232 - HAL1 LINE L1 -586 1921 1526 725 206 0 0 chr4 113493115 113493251 -88835096 - FLAM_A SINE Alu -6 136 1 2503 231 71 61 chr4 113493417 113494715 -88833632 - L1ME2 LINE L1 -11 6153 4850 823 256 179 19 chr4 113495057 113495260 -88833087 - L1ME3 LINE L1 -277 5885 5716 297 0 0 0 chr4 113495260 113495293 -88833054 + (TG)n Simple_repeat Simple_repeat 2 34 0 823 256 179 19 chr4 113495293 113495557 -88832790 - L1ME3 LINE L1 -446 5716 5343 265 319 94 29 chr4 113495532 113495839 -88832508 - HAL1 LINE L1 -1447 1060 734 * 23 0 0 0 chr4 113496282 113496305 -88832042 + AT_rich Low_complexity Low_complexity 1 23 0 2220 81 40 3 chr4 113496892 113497189 -88831158 + AluSg SINE Alu 1 308 -2 190 75 0 125 chr4 113498259 113498299 -88830048 + L2 LINE L2 3238 3272 0 315 197 42 0 chr4 113498840 113498911 -88829436 + MER116 DNA Mariner 7 80 0 455 238 94 72 chr4 113499076 113499257 -88829090 - MIR SINE MIR -2 260 76 1700 166 0 64 chr4 113500110 113500364 -88827983 + AluJo SINE Alu 1 231 -81 3962 87 22 2 chr4 113500364 113500907 -88827440 - MER41A LTR ERV1 0 554 1 1700 166 0 64 chr4 113500907 113500978 -88827369 + AluJo SINE Alu 231 305 -7 494 273 128 54 chr4 113501344 113501843 -88826504 - MER34 LTR ERV1 -6 536 1 4050 140 40 37 chr4 113502248 113502956 -88825391 - MER72 LTR ERV1 -5 717 8 295 313 287 7 chr4 113503332 113503482 -88824865 + MER91A DNA MER1_type 1 192 -4 21 36 0 0 chr4 113505180 113505208 -88823139 + AT_rich Low_complexity Low_complexity 1 28 0 29 70 0 0 chr4 113505307 113505364 -88822983 + AT_rich Low_complexity Low_complexity 1 57 0 1202 213 17 92 chr4 113505373 113505528 -88822819 - MLT2C1 LTR ERVL -67 330 215 672 208 0 8 chr4 113505528 113505676 -88822671 - FLAM_A SINE Alu 0 147 1 1202 213 17 92 chr4 113505676 113505876 -88822471 - MLT2C1 LTR ERVL -182 215 1 2237 112 51 28 chr4 113506196 113506552 -88821795 - THE1B LTR MaLR 0 364 1 2026 139 39 54 chr4 113507506 113507865 -88820482 - MER44D DNA MER2_type -1882 605 379 2021 80 50 33 chr4 113507865 113508164 -88820183 - AluY SINE Alu -7 304 1 2026 139 39 54 chr4 113508164 113508193 -88820154 - MER44D DNA MER2_type -2108 379 351 612 197 182 0 chr4 113508194 113508326 -88820021 - MER44D DNA MER2_type -549 156 1 242 259 25 25 chr4 113508423 113508504 -88819843 - L2 LINE L2 -194 3078 2998 1025 231 53 12 chr4 113508506 113508749 -88819598 - MIR SINE MIR 0 262 10 628 347 174 11 chr4 113508748 113509494 -88818853 - L2 LINE L2 -296 2976 2009 * 1218 137 9 19 chr4 113510485 113510697 -88817650 + Tigger2 DNA MER2_type 1 210 -2508 727 166 7 48 chr4 113510691 113510836 -88817511 + Tigger2 DNA MER2_type 2578 2716 -2 * 2405 75 0 0 chr4 113511715 113512010 -88816337 + AluY SINE Alu 1 295 -16 835 107 0 16 chr4 113512021 113512142 -88816205 - AluSg SINE Alu -183 127 9 1104 104 7 0 chr4 113512145 113512299 -88816048 + AluSg/x SINE Alu 140 294 -18 5708 91 58 4 chr4 113512891 113513694 -88814653 - Charlie3 DNA MER1_type -4 2706 1860 1330 219 45 64 chr4 113614440 113614645 -88713702 + Charlie1a DNA MER1_type 42 238 -2523 237 33 0 0 chr4 113614645 113614675 -88713672 + (CA)n Simple_repeat Simple_repeat 2 31 0 1330 219 45 64 chr4 113614675 113614844 -88713503 + Charlie1a DNA MER1_type 238 409 -1046 649 247 7 7 chr4 113614879 113615033 -88713314 + Charlie1a DNA MER1_type 483 636 -819 * 2636 162 116 12 chr4 113615031 113615636 -88712711 + Charlie1a DNA MER1_type 783 1450 -5 246 301 86 0 chr4 113615813 113615906 -88712441 - L2 LINE L2 -4 3309 3209 384 388 24 68 chr4 113617809 113618149 -88710198 + L2 LINE L2 2948 3272 0 199 250 100 0 chr4 113618149 113618209 -88710138 + MIR3 SINE MIR 139 204 -4 549 240 185 0 chr4 113618554 113618700 -88709647 + MER5B DNA MER1_type 6 178 0 25 31 0 0 chr4 113618867 113618899 -88709448 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr4 113620900 113620927 -88707420 + AT_rich Low_complexity Low_complexity 1 27 0 1723 209 42 81 chr4 113620927 113620998 -88707349 - MLT1D LTR MaLR -7 498 426 2313 79 3 0 chr4 113620998 113621301 -88707046 - AluY SINE Alu -3 308 5 1723 209 42 81 chr4 113621301 113621747 -88706600 - MLT1D LTR MaLR -79 426 1 320 242 281 0 chr4 113622487 113622615 -88705732 - MER5A DNA MER1_type -3 186 23 542 200 127 13 chr4 113623140 113623290 -88705057 + MLT1C LTR MaLR 197 363 -104 624 287 62 14 chr4 113623416 113623625 -88704722 - MIR SINE MIR -43 219 1 948 232 14 10 chr4 113624967 113625174 -88703173 - MLT1C LTR MaLR -5 462 255 192 97 0 0 chr4 113625280 113625311 -88703036 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 209 273 91 39 chr4 113625513 113625590 -88702757 + MIR SINE MIR 72 152 -110 21 36 0 0 chr4 113626592 113626620 -88701727 + AT_rich Low_complexity Low_complexity 1 28 0 2217 99 3 0 chr4 113626721 113627014 -88701333 + AluSc SINE Alu 1 294 -15 220 314 48 57 chr4 113627220 113627325 -88701022 - MIR3 SINE MIR -102 106 3 273 333 0 0 chr4 113629061 113629130 -88699217 - L2 LINE L2 -4 3309 3241 236 352 44 31 chr4 113629163 113629322 -88699025 + L3 LINE CR1 1280 1440 -137 370 175 62 0 chr4 113629385 113629465 -88698882 - L1PA16 LINE L1 -1 6165 6081 2225 79 0 4 chr4 113630455 113630757 -88697590 + AluSc SINE Alu 1 301 0 23 0 0 0 chr4 113631232 113631255 -88697092 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr4 113631797 113631832 -88696515 + AT_rich Low_complexity Low_complexity 1 35 0 320 64 21 0 chr4 113631846 113631893 -88696454 + (TG)n Simple_repeat Simple_repeat 1 48 0 258 143 0 0 chr4 113631893 113631942 -88696405 + (GA)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr4 113632523 113632544 -88695803 + AT_rich Low_complexity Low_complexity 1 21 0 481 310 116 13 chr4 113633004 113633236 -88695111 - MIR SINE MIR -6 256 1 205 147 0 0 chr4 113633526 113633560 -88694787 - MIR SINE MIR -35 227 194 182 267 0 0 chr4 113633624 113633669 -88694678 + MIR SINE MIR 148 192 -70 432 256 40 0 chr4 113633693 113633818 -88694529 - MER103 DNA DNA -24 142 13 189 171 0 0 chr4 113634636 113634671 -88693676 + (TG)n Simple_repeat Simple_repeat 2 36 0 435 256 77 89 chr4 113635512 113635680 -88692667 + LTR33 LTR ERVL 9 174 -347 584 273 0 0 chr4 113635688 113635820 -88692527 - MER63A DNA MER1_type -35 175 44 622 173 14 122 chr4 113636067 113636281 -88692066 + Charlie5 DNA MER1_type 1 191 -2421 * 802 181 79 0 chr4 113636280 113636507 -88691840 + Charlie5 DNA MER1_type 2352 2596 -16 266 268 0 0 chr4 113636540 113636611 -88691736 + LTR33 LTR ERVL 449 519 -2 421 335 35 39 chr4 113636887 113637090 -88691257 - MIR SINE MIR -56 206 5 23 0 0 0 chr4 113637745 113637768 -88690579 + AT_rich Low_complexity Low_complexity 1 23 0 366 307 71 16 chr4 113638072 113638199 -88690148 + MIR SINE MIR 18 151 -111 2324 90 0 7 chr4 113638202 113638502 -88689845 + AluSc SINE Alu 1 298 -11 278 288 43 29 chr4 113638515 113638654 -88689693 - LTR67 LTR ERVL -2 555 415 376 177 80 53 chr4 113639993 113640106 -88688241 - U5 snRNA snRNA 0 116 1 193 180 16 33 chr4 113640407 113640468 -88687879 + CT-rich Low_complexity Low_complexity 3 62 0 1012 191 60 63 chr4 113640468 113640520 -88687827 - L1MD1 LINE L1 -228 6014 5963 2167 125 0 22 chr4 113640520 113640839 -88687508 - AluSx SINE Alu 0 312 1 1223 170 12 21 chr4 113640849 113641090 -88687257 - L1MD1 LINE L1 -2 6240 6002 1012 191 60 63 chr4 113641090 113641137 -88687210 - L1MD1 LINE L1 -288 5954 5908 2395 73 0 0 chr4 113641137 113641438 -88686909 - AluY SINE Alu -10 301 1 1012 191 60 63 chr4 113641438 113641645 -88686702 - L1MD1 LINE L1 -334 5908 5697 877 136 26 7 chr4 113641639 113641794 -88686553 + L1MB4 LINE L1 5677 5834 -346 * 2213 132 35 0 chr4 113641792 113642162 -88686185 + L1MB4 LINE L1 5767 6149 -31 2544 182 17 22 chr4 113642189 113642948 -88685399 - L1MD1 LINE L1 -528 5714 4965 705 124 23 0 chr4 113642964 113643093 -88685254 + CT-rich Low_complexity Low_complexity 4 135 0 349 271 160 0 chr4 113643269 113643413 -88684934 - HAL1 LINE L1 -1201 1306 1140 707 200 16 0 chr4 113643480 113643605 -88684742 - FLAM_A SINE Alu -4 129 3 204 216 39 0 chr4 113644043 113644094 -88684253 + CT-rich Low_complexity Low_complexity 3 55 0 198 309 62 10 chr4 113644114 113644211 -88684136 - L2 LINE L2 -62 3251 3150 361 296 30 35 chr4 113644364 113644567 -88683780 - L2 LINE L2 -1 3312 3111 22 56 0 0 chr4 113645105 113645141 -88683206 + AT_rich Low_complexity Low_complexity 1 36 0 241 220 0 0 chr4 113645388 113645438 -88682909 + MIR SINE MIR 143 192 -70 182 250 0 10 chr4 113646027 113646127 -88682220 + (TA)n Simple_repeat Simple_repeat 1 99 0 201 279 77 48 chr4 113647026 113647130 -88681217 + MIR SINE MIR 100 206 -56 210 37 0 0 chr4 113647279 113647306 -88681041 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 31284 103 7 26 chr4 113647340 113653620 -88674727 + L1PA7 LINE L1 198 6464 -5 259 248 30 69 chr4 113653685 113653786 -88674561 - MIR SINE MIR -35 227 131 219 288 68 0 chr4 113655876 113655935 -88672412 - MIR SINE MIR 0 262 200 623 296 90 3 chr4 113656123 113656322 -88672025 - MIR SINE MIR -33 229 15 226 289 26 0 chr4 113657064 113657140 -88671207 + GA-rich Low_complexity Low_complexity 2 79 0 192 271 71 14 chr4 113657954 113658024 -88670323 + MIR SINE MIR 76 149 -113 446 218 6 24 chr4 113658182 113658352 -88669995 + CT-rich Low_complexity Low_complexity 2 168 0 325 261 22 11 chr4 113658363 113658455 -88669892 + CT-rich Low_complexity Low_complexity 3 95 0 429 206 5 43 chr4 113658468 113658652 -88669695 + CT-rich Low_complexity Low_complexity 2 178 0 200 226 38 38 chr4 113658660 113658713 -88669634 - L2 LINE L2 -12 3301 3249 607 344 60 51 chr4 113658837 113659270 -88669077 + L2 LINE L2 2836 3272 0 1415 129 0 23 chr4 113659405 113659622 -88668725 + THE1B LTR MaLR 1 212 -152 4196 13 0 0 chr4 113660291 113660769 -88667578 + L1PA2 LINE L1 5676 6153 -2 24 0 0 0 chr4 113660850 113660874 -88667473 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 113661074 113661095 -88667252 + AT_rich Low_complexity Low_complexity 1 21 0 549 52 52 17 chr4 113661351 113661466 -88666881 + (TCTA)n Simple_repeat Simple_repeat 3 121 0 1328 185 52 7 chr4 113661472 113661742 -88666605 - MLT2C1 LTR ERVL -62 335 54 2421 176 8 8 chr4 113661744 113662215 -88666132 - L1MA4 LINE L1 -41 6259 5789 1391 112 68 16 chr4 113662238 113662488 -88665859 + L1 LINE L1 4691 4953 -1193 294 153 68 0 chr4 113662485 113662544 -88665803 + L1MA4 LINE L1 6038 6100 -200 * 2700 135 20 2 chr4 113662546 113662991 -88665356 - L1MA4 LINE L1 -519 5786 5334 2232 107 0 0 chr4 113662991 113663291 -88665056 - AluSg SINE Alu -8 302 3 854 132 0 0 chr4 113663291 113663420 -88664927 - AluSp/q SINE Alu -16 297 169 2540 157 25 10 chr4 113663423 113663812 -88664535 - L1MA4 LINE L1 -840 5306 4820 558 0 0 0 chr4 113663812 113663874 -88664473 + (CA)n Simple_repeat Simple_repeat 1 62 0 2540 157 25 10 chr4 113663874 113664090 -88664257 - L1MA4 LINE L1 -1326 4820 4609 881 231 52 0 chr4 113664090 113664319 -88664028 - Charlie4 DNA MER1_type -1685 276 36 457 245 174 36 chr4 113664435 113664633 -88663714 - MIR SINE MIR 0 262 38 306 0 0 0 chr4 113664766 113664800 -88663547 + (TG)n Simple_repeat Simple_repeat 1 34 0 2381 125 8 5 chr4 113665787 113666163 -88662184 - L1PB3 LINE L1 -2 6152 5776 222 171 0 0 chr4 113666197 113666238 -88662109 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 479 185 22 0 chr4 113666239 113666331 -88662016 - L1PB3 LINE L1 -363 5791 5698 219 114 0 0 chr4 113666607 113666642 -88661705 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 2299 105 0 3 chr4 113667498 113667803 -88660544 - AluSq SINE Alu 0 313 10 22 0 0 0 chr4 113667923 113667945 -88660402 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr4 113668210 113668252 -88660095 + AT_rich Low_complexity Low_complexity 1 42 0 252 0 0 0 chr4 113668425 113668453 -88659894 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 8194 31 2 0 chr4 113668456 113670197 -88658150 - L1PA3 LINE L1 -7 6148 4406 2283 104 0 3 chr4 113671545 113671852 -88656495 + AluSg SINE Alu 1 306 -4 479 330 120 8 chr4 113674098 113674356 -88653991 + L3 LINE CR1 1290 1576 -1 2679 147 30 11 chr4 113674677 113675139 -88653208 - L1MA4A LINE L1 -292 6011 5541 215 174 22 0 chr4 113675152 113675198 -88653149 + (TA)n Simple_repeat Simple_repeat 1 47 0 508 284 39 25 chr4 113675249 113675594 -88652753 + L1ME3A LINE L1 5772 6156 -14 939 289 171 6 chr4 113675703 113676171 -88652176 - L2 LINE L2 -379 2935 2391 245 250 59 0 chr4 113676361 113676429 -88651918 + MIR SINE MIR 191 262 0 336 366 30 8 chr4 113676684 113676818 -88651529 - MIR SINE MIR -112 150 14 293 154 77 0 chr4 113677598 113677650 -88650697 - L2 LINE L2 -4 3309 3254 1001 169 68 0 chr4 113677980 113678157 -88650190 + MER5A DNA MER1_type 1 189 0 274 325 122 9 chr4 113678162 113678280 -88650067 + MIR SINE MIR 24 146 -62 691 175 32 0 chr4 113678290 113678416 -88649931 + L1MB5 LINE L1 6012 6141 -33 1404 209 84 0 chr4 113678416 113678703 -88649644 + AluJo SINE Alu 2 312 0 905 212 24 45 chr4 113679856 113680148 -88648199 - L1MC5 LINE L1 -51 7910 7625 24 32 0 0 chr4 113680899 113680930 -88647417 + AT_rich Low_complexity Low_complexity 1 31 0 280 327 55 80 chr4 113683027 113683428 -88644919 - L2 LINE L2 -38 3234 2844 25 0 0 0 chr4 113684380 113684405 -88643942 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr4 113685218 113685242 -88643105 + AT_rich Low_complexity Low_complexity 1 24 0 42361 37 23 1 chr4 113685246 113691262 -88637085 - L1PA2 LINE L1 -2 6153 2 215 152 22 0 chr4 113691813 113691859 -88636488 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 303 71 0 0 chr4 113692266 113692278 -88636069 + (TG)n Simple_repeat Simple_repeat 1 54 0 303 71 0 0 chr4 113692278 113692320 -88636027 + (TG)n Simple_repeat Simple_repeat 1 42 0 300 111 0 0 chr4 113692360 113692405 -88635942 + (CA)n Simple_repeat Simple_repeat 2 46 0 277 306 48 66 chr4 113693174 113693351 -88634996 + MER5A DNA MER1_type 3 178 0 698 281 138 20 chr4 113694213 113694562 -88633785 + Charlie2a DNA MER1_type 37 426 -2356 252 250 216 6 chr4 113694617 113694793 -88633554 + Charlie2a DNA MER1_type 770 982 -1880 218 279 29 15 chr4 113694972 113695040 -88633307 + L2 LINE L2 3241 3309 -4 183 172 16 109 chr4 113695267 113695331 -88633016 - L2 LINE L2 -67 3246 3189 34 0 0 0 chr4 113697877 113697911 -88630436 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr4 113698125 113698150 -88630197 + AT_rich Low_complexity Low_complexity 1 25 0 237 224 0 0 chr4 113701517 113701575 -88626772 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 442 262 68 81 chr4 113704695 113704943 -88623404 - L3 LINE CR1 -135 1442 1198 661 297 163 21 chr4 113707646 113708359 -88619988 - L2 LINE L2 0 3313 2496 233 357 12 12 chr4 113710491 113710575 -88617772 - MIR SINE MIR -177 85 2 584 208 0 16 chr4 113711684 113711809 -88616538 - FRAM SINE Alu -8 168 46 717 249 23 6 chr4 113711950 113712123 -88616224 + MER8 DNA MER2_type 1 176 -63 473 125 0 14 chr4 113712157 113712229 -88616118 - Tigger2 DNA MER2_type -2645 73 3 288 273 26 84 chr4 113712250 113712404 -88615943 + Charlie8 DNA MER1_type 73 217 -2200 360 320 45 59 chr4 113712568 113712838 -88615509 + L2 LINE L2 2783 3052 -261 504 304 150 0 chr4 113713936 113714156 -88614191 - MIR SINE MIR -2 260 8 429 214 43 8 chr4 113715102 113715219 -88613128 - Charlie1 DNA MER1_type -22 2739 2619 * 805 272 35 4 chr4 113715202 113715434 -88612913 - Charlie1 DNA MER1_type -2522 239 1 189 0 0 0 chr4 113716136 113716157 -88612190 + (TAAAAA)n Simple_repeat Simple_repeat 3 23 0 2143 128 7 0 chr4 113718035 113718339 -88610008 + AluSq SINE Alu 1 306 -7 195 339 202 4 chr4 113720072 113720320 -88608027 + L2 LINE L2 1944 2240 -1074 1279 289 55 24 chr4 113720432 113721092 -88607255 - L2 LINE L2 -1 3312 2630 1268 273 56 56 chr4 113721101 113721581 -88606766 - MLT1H LTR MaLR -29 520 41 283 361 110 7 chr4 113721608 113721763 -88606584 - L2 LINE L2 -761 2553 2383 417 355 38 16 chr4 113721810 113721993 -88606354 - MLT1K LTR MaLR -207 381 195 20257 37 6 1 chr4 113722861 113726128 -88602219 - L1PA4 LINE L1 0 6155 2875 597 65 0 0 chr4 113726128 113726205 -88602142 + L1PA4 LINE L1 2789 2865 -3281 1324 210 43 47 chr4 113726767 113727067 -88601280 + AluJo SINE Alu 1 299 -13 247 235 176 0 chr4 113727971 113728056 -88600291 - MIR SINE MIR -66 196 97 275 239 115 39 chr4 113728223 113728416 -88599931 - L1MC/D LINE L1 -586 5656 5450 398 321 93 21 chr4 113728476 113728713 -88599634 - L1MC/D LINE L1 -987 5159 4906 2257 260 32 41 chr4 113728866 113729654 -88598693 - L1ME1 LINE L1 -15 6220 5440 * 6311 164 18 5 chr4 113729647 113731692 -88596655 - L1PA15 LINE L1 -5 6160 4094 4371 289 71 36 chr4 113731689 113733827 -88594520 - L1PA12 LINE L1 -4831 2750 2 * 2651 237 47 6 chr4 113733823 113734657 -88593690 - L1ME1 LINE L1 -756 5459 4592 * 475 314 84 52 chr4 113734686 113735151 -88593196 - L1MCc LINE L1 -5920 503 24 205 148 19 19 chr4 113735359 113735413 -88592934 + (TA)n Simple_repeat Simple_repeat 1 54 0 1491 197 39 0 chr4 113735473 113735778 -88592569 - L1MB5 LINE L1 -10 6164 5848 225 336 35 26 chr4 113735875 113735991 -88592356 - MER20B DNA MER1_type -661 122 6 499 270 116 20 chr4 113735999 113736596 -88591751 - L1ME1 LINE L1 -2759 3456 2803 1139 322 59 10 chr4 113736626 113737414 -88590933 - L2 LINE L2 0 3313 2424 182 290 129 0 chr4 113737442 113737504 -88590843 - L2 LINE L2 -1007 2307 2238 634 304 40 18 chr4 113737647 113737871 -88590476 + MIR SINE MIR 7 235 -27 374 266 105 58 chr4 113737885 113738264 -88590083 - L1ME1 LINE L1 -3710 2520 2154 432 82 0 0 chr4 113738487 113738548 -88589799 + (TG)n Simple_repeat Simple_repeat 2 62 0 361 325 141 44 chr4 113738573 113738871 -88589476 - HAL1 LINE L1 -754 1753 1427 281 374 46 24 chr4 113739135 113739507 -88588840 - L1ME1 LINE L1 -5626 579 200 475 288 31 19 chr4 113739701 113739861 -88588486 - MLT1K LTR MaLR -104 484 323 722 207 71 0 chr4 113740513 113740785 -88587562 + MER33 DNA MER1_type 33 363 0 6607 83 16 0 chr4 113740842 113742872 -88585475 - L1PA7 LINE L1 0 6154 4009 6032 95 6 0 chr4 113742868 113743752 -88584595 + L1PA7 LINE L1 3098 3986 -2160 * 750 217 55 50 chr4 113743989 113744402 -88583945 + MER39 LTR ERV1 114 707 0 441 308 128 21 chr4 113744896 113745130 -88583217 + MIR SINE MIR 1 259 -3 228 204 0 0 chr4 113746414 113746458 -88581889 - L1MEc LINE L1 -5030 1366 1323 25 0 0 0 chr4 113747065 113747090 -88581257 + AT_rich Low_complexity Low_complexity 1 25 0 264 217 36 36 chr4 113747204 113747287 -88581060 + CT-rich Low_complexity Low_complexity 3 85 0 1583 264 126 20 chr4 113748021 113748241 -88580106 + L1MC4 LINE L1 6458 6653 -1389 213 39 0 0 chr4 113748241 113748267 -88580080 + (TA)n Simple_repeat Simple_repeat 2 27 0 1583 264 126 20 chr4 113748267 113748634 -88579713 + L1MC4 LINE L1 6653 7107 -935 1119 266 63 40 chr4 113748671 113749021 -88579326 - MLT1E LTR MaLR -117 476 119 409 237 112 40 chr4 113749025 113749177 -88579170 - MLT1K LTR MaLR -420 173 11 244 273 45 18 chr4 113749313 113749423 -88578924 + L1ME LINE L1 5624 5736 -385 1710 123 109 120 chr4 113749504 113749936 -88578411 - MSTA LTR MaLR -1 427 1 28 102 0 0 chr4 113750107 113750205 -88578142 + AT_rich Low_complexity Low_complexity 1 98 0 10700 124 17 21 chr4 113750659 113752386 -88575961 + L1P LINE L1 552 2272 -3874 4415 170 29 11 chr4 113802391 113802581 -88525766 + L1M1 LINE L1 2890 3075 -4490 2282 90 3 10 chr4 113802581 113802881 -88525466 + AluSq SINE Alu 1 298 -15 4415 170 29 11 chr4 113802881 113804355 -88523992 + L1M1 LINE L1 3075 4586 -2979 856 262 13 18 chr4 113805930 113806155 -88522192 + MIR SINE MIR 4 227 -35 26326 19 1 0 chr4 113810576 113814462 -88513885 + L1HS LINE L1 2267 6155 0 216 0 0 0 chr4 113814615 113814639 -88513708 + (TG)n Simple_repeat Simple_repeat 1 24 0 373 328 0 16 chr4 113818984 113819106 -88509241 + MIR SINE MIR 95 214 -48 2022 112 22 50 chr4 113820100 113820504 -88507843 - THE1A LTR MaLR 0 355 1 929 299 73 19 chr4 113821603 113821971 -88506376 + LTR16C LTR ERVL 104 491 0 318 287 85 0 chr4 113821974 113822068 -88506279 + MIR3 SINE MIR 60 161 -47 1783 157 112 0 chr4 113822729 113823041 -88505306 + MER7A DNA MER2_type 1 345 -1 194 336 181 0 chr4 113824023 113824139 -88504208 + L2 LINE L2 3173 3309 -4 268 360 9 0 chr4 113825134 113825245 -88503102 - MIR SINE MIR 0 262 151 191 338 15 0 chr4 113825674 113825742 -88502605 - MIR SINE MIR -55 153 85 387 323 87 33 chr4 113825795 113826071 -88502276 + L2 LINE L2 3011 3301 -12 222 160 80 0 chr4 113827516 113827566 -88500781 + L2 LINE L2 3214 3267 -5 485 334 51 87 chr4 113828585 113828974 -88499373 - L2 LINE L2 0 3272 2898 2321 161 13 0 chr4 113829026 113829424 -88498923 + MER57A LTR ERV1 1 403 0 24 0 0 0 chr4 113829797 113829821 -88498526 + AT_rich Low_complexity Low_complexity 1 24 0 1736 256 92 12 chr4 113829917 113830406 -88497941 + MLT1H LTR MaLR 7 534 -15 24 0 0 0 chr4 113830426 113830450 -88497897 + AT_rich Low_complexity Low_complexity 1 24 0 313 300 60 0 chr4 113830450 113830550 -88497797 - L2 LINE L2 0 3313 3208 21 0 0 0 chr4 113831395 113831416 -88496931 + AT_rich Low_complexity Low_complexity 1 21 0 202 255 0 0 chr4 113832375 113832422 -88495925 + MIR SINE MIR 69 115 -147 256 314 35 0 chr4 113833008 113833094 -88495253 - MIR SINE MIR -50 212 124 513 285 54 89 chr4 113833165 113833481 -88494866 - L2 LINE L2 0 3313 3009 23 33 0 0 chr4 113833974 113834004 -88494343 + AT_rich Low_complexity Low_complexity 1 30 0 4456 132 9 21 chr4 113834177 113834392 -88493955 - L1PA16 LINE L1 -4 6162 5946 2530 164 9 7 chr4 113834392 113834819 -88493528 - MSTA LTR MaLR 0 428 1 4456 132 9 21 chr4 113834819 113835366 -88492981 - L1PA16 LINE L1 -220 5946 5409 420 294 64 5 chr4 113835383 113835570 -88492777 - L1ME4a LINE L1 -295 5826 5629 817 259 58 18 chr4 113838428 113838652 -88489695 - MIR SINE MIR -10 252 20 1227 169 85 119 chr4 113838962 113839316 -88489031 - MLT1A2 LTR MaLR -32 342 1 3332 218 73 23 chr4 113839694 113840145 -88488202 - L1ME1 LINE L1 -5 6161 5734 1699 233 0 8 chr4 113840145 113840522 -88487825 + MLT1A2 LTR MaLR 1 374 0 3332 218 73 23 chr4 113840522 113841238 -88487109 - L1ME1 LINE L1 -432 5734 4943 293 309 121 36 chr4 113842313 113842478 -88485869 + L3 LINE CR1 1065 1243 -334 28 0 0 0 chr4 113842734 113842762 -88485585 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr4 113842949 113842984 -88485363 + AT_rich Low_complexity Low_complexity 1 35 0 625 180 102 65 chr4 113844276 113844533 -88483814 - MLT1G LTR MaLR -318 272 6 290 239 112 112 chr4 113844562 113844830 -88483517 - MLT1G-int LTR MaLR -23 1712 1445 1322 257 49 6 chr4 113844936 113845302 -88483045 - MLT2F LTR ERVL 0 663 282 1395 132 45 0 chr4 113846372 113846592 -88481755 + MER30 DNA MER1_type 1 230 0 345 172 0 0 chr4 113847719 113847783 -88480564 + (CA)n Simple_repeat Simple_repeat 2 65 0 348 388 13 0 chr4 113847969 113848121 -88480226 - L2 LINE L2 -225 3047 2894 182 154 46 15 chr4 113848498 113848563 -88479784 + (TA)n Simple_repeat Simple_repeat 2 68 0 2308 97 21 0 chr4 113848900 113849240 -88479107 + L1PA13 LINE L1 5817 6163 0 21 0 0 0 chr4 113849257 113849278 -88479069 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr4 113850165 113850208 -88478139 + AT_rich Low_complexity Low_complexity 1 43 0 31 26 0 0 chr4 113850250 113850288 -88478059 + AT_rich Low_complexity Low_complexity 1 38 0 485 309 124 36 chr4 113851325 113851655 -88476692 + MLT1I LTR MaLR 43 401 -8 308 228 88 35 chr4 113851900 113852014 -88476333 - MIR SINE MIR -56 206 87 2081 124 3 0 chr4 113852810 113853109 -88475238 - AluSx SINE Alu -12 300 1 28 48 0 0 chr4 113853235 113853277 -88475070 + AT_rich Low_complexity Low_complexity 1 42 0 581 0 14 0 chr4 113854747 113854816 -88473531 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 334 197 0 0 chr4 113854828 113854894 -88473453 - L1MC3 LINE L1 -923 7280 7215 23 68 0 0 chr4 113854894 113854938 -88473409 + AT_rich Low_complexity Low_complexity 1 44 0 728 110 17 35 chr4 113855051 113855223 -88473124 - L1MA4 LINE L1 0 6300 6081 436 94 62 0 chr4 113855233 113855361 -88472986 + (TA)n Simple_repeat Simple_repeat 1 136 0 5785 161 32 17 chr4 113855364 113857194 -88471153 - L1MA4 LINE L1 -224 6076 4218 3576 226 36 23 chr4 113857194 113858143 -88470204 - L1MC3 LINE L1 -199 6552 6265 * 6450 240 33 25 chr4 113858113 113860472 -88467875 - L1MC3 LINE L1 -1888 4676 2299 22 0 0 0 chr4 113860474 113860496 -88467851 + AT_rich Low_complexity Low_complexity 1 22 0 893 202 37 74 chr4 113860697 113861217 -88467130 - L1MC3 LINE L1 -4425 2139 1559 363 268 98 33 chr4 113861306 113861459 -88466888 - L1MC3 LINE L1 -5904 660 498 646 279 24 24 chr4 113861486 113861737 -88466610 - L1MC3 LINE L1 -5794 251 1 29 0 0 0 chr4 113861854 113861883 -88466464 + AT_rich Low_complexity Low_complexity 1 29 0 331 218 95 102 chr4 113861889 113862036 -88466311 + MER104 DNA Tc2 34 179 -1 25 0 0 0 chr4 113862882 113862907 -88465440 + AT_rich Low_complexity Low_complexity 1 25 0 386 320 180 0 chr4 113862945 113863095 -88465252 - MER5A DNA MER1_type -1 188 12 23 0 0 0 chr4 113863130 113863153 -88465194 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr4 113863417 113863448 -88464899 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr4 113863607 113863644 -88464703 + AT_rich Low_complexity Low_complexity 1 37 0 6671 130 44 12 chr4 113864043 113865184 -88463163 - Tigger3b DNA MER2_type 0 1231 55 239 238 67 86 chr4 113865467 113865572 -88462775 - L2 LINE L2 -2 3270 3168 306 279 159 0 chr4 113865935 113866067 -88462280 + MIR SINE MIR 37 186 -58 209 171 0 0 chr4 113866248 113866283 -88462064 + (TG)n Simple_repeat Simple_repeat 2 36 0 25 0 0 0 chr4 113867086 113867111 -88461236 + AT_rich Low_complexity Low_complexity 1 25 0 204 323 24 16 chr4 113867403 113867527 -88460820 + L2 LINE L2 1915 2039 -1275 493 275 148 49 chr4 113867530 113868224 -88460123 + LTR50 LTR ERVL 1 508 -15 1608 132 152 14 chr4 113868610 113868906 -88459441 + MER1B DNA MER1_type 1 337 0 3927 162 34 38 chr4 113869221 113869957 -88458390 + MER44D DNA MER2_type 1 605 0 294 215 0 0 chr4 113870461 113870540 -88457807 + C-rich Low_complexity Low_complexity 2 80 0 32 0 0 0 chr4 113871128 113871160 -88457187 + AT_rich Low_complexity Low_complexity 1 32 0 239 309 53 11 chr4 113871244 113871338 -88457009 - L3b LINE CR1 -253 1330 1233 301 291 0 63 chr4 113871358 113871485 -88456862 - MER94 DNA DNA -15 119 1 556 183 189 37 chr4 113872384 113872548 -88455799 - MER5A DNA MER1_type 0 189 1 186 43 0 0 chr4 113875843 113875866 -88452481 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2721 13 0 0 chr4 113876098 113876404 -88451943 - AluYa5 SINE Alu -5 306 1 2850 163 64 2 chr4 113877228 113877368 -88450979 - MER1A DNA MER1_type -2173 529 399 480 77 0 0 chr4 113877368 113877433 -88450914 + (TA)n Simple_repeat Simple_repeat 1 65 0 2850 163 64 2 chr4 113877433 113877790 -88450557 - MER1A DNA MER1_type -2303 399 1 1790 145 0 60 chr4 113878288 113878619 -88449728 - MSTC LTR MaLR -5 423 113 2220 111 131 0 chr4 113878619 113878979 -88449368 + MLT2A2 LTR ERVL 1 407 -46 486 49 0 0 chr4 113878986 113879022 -88449325 + (CA)n Simple_repeat Simple_repeat 1 97 0 486 49 0 0 chr4 113879022 113879083 -88449264 + (CA)n Simple_repeat Simple_repeat 2 62 0 345 104 0 0 chr4 113879130 113879178 -88449169 + MLT2A2 LTR ERVL 473 520 0 632 170 45 0 chr4 113879178 113879290 -88449057 - MSTC LTR MaLR -311 117 1 231 347 137 8 chr4 113879291 113879415 -88448932 - L2 LINE L2 -21 3251 3112 236 191 0 0 chr4 113881506 113881548 -88446799 - L1MA8 LINE L1 -88 6203 6162 249 288 209 0 chr4 113882544 113882724 -88445623 + MER102b DNA MER1_type 78 305 -36 309 356 47 28 chr4 113883282 113883535 -88444812 + MIR SINE MIR 2 259 -3 468 0 0 0 chr4 113883961 113884013 -88444334 + (TA)n Simple_repeat Simple_repeat 2 53 0 1839 148 13 28 chr4 113884055 113884372 -88443975 + AluSq SINE Alu 1 312 -1 219 205 0 77 chr4 113884612 113884690 -88443657 + A-rich Low_complexity Low_complexity 5 76 0 216 226 0 19 chr4 113884797 113884850 -88443497 + (CATATA)n Simple_repeat Simple_repeat 4 55 0 201 224 0 0 chr4 113885564 113885622 -88442725 + (CAGAGA)n Simple_repeat Simple_repeat 3 60 0 22 35 0 0 chr4 113886081 113886110 -88442237 + AT_rich Low_complexity Low_complexity 1 29 0 284 119 194 0 chr4 113886148 113886215 -88442132 - L1MA9 LINE L1 -5 6307 6228 1881 164 46 0 chr4 113886267 113886638 -88441709 - L1MA9 LINE L1 -74 6238 5851 516 344 40 9 chr4 113886781 113887005 -88441342 + MLT1I LTR MaLR 179 409 0 22 0 0 0 chr4 113887300 113887322 -88441025 + AT_rich Low_complexity Low_complexity 1 22 0 1902 194 61 8 chr4 113887350 113888023 -88440324 - L1M2 LINE L1 -584 5728 5020 1608 166 30 6 chr4 113888018 113888356 -88439991 - L1M2 LINE L1 -1549 4597 4252 * 764 196 0 21 chr4 113889207 113889350 -88438997 + FLAM_C SINE Alu 1 140 -3 213 159 0 0 chr4 113889620 113889664 -88438683 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 299 291 189 34 chr4 113889777 113889925 -88438422 - MIR3 SINE MIR -17 191 21 430 333 33 22 chr4 113892287 113892467 -88435880 + MIR SINE MIR 6 187 -75 182 356 197 19 chr4 113893020 113893340 -88435007 + L2 LINE L2 2596 2972 -342 2279 82 0 0 chr4 113894291 113894599 -88433748 + AluY SINE Alu 1 308 0 360 0 0 0 chr4 113895685 113895725 -88432622 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 2498 53 0 3 chr4 113896905 113897207 -88431140 + AluY SINE Alu 1 301 -10 354 288 19 86 chr4 113897286 113897553 -88430794 + L2 LINE L2 3056 3304 -9 605 271 39 102 chr4 113898577 113899067 -88429280 - L1MC4a LINE L1 -1884 5924 5466 42 36 0 0 chr4 113899079 113899135 -88429212 + AT_rich Low_complexity Low_complexity 1 56 0 201 74 0 0 chr4 113899863 113899890 -88428457 + (A)n Simple_repeat Simple_repeat 1 27 0 694 301 34 58 chr4 113901452 113901917 -88426430 - LTR16A1 LTR ERVL 0 457 4 235 337 98 43 chr4 113902163 113902347 -88426000 - L2 LINE L2 -255 3017 2824 568 302 38 19 chr4 113903124 113903389 -88424958 + L1ME3A LINE L1 5669 5938 -232 2387 122 5 22 chr4 113904172 113904542 -88423805 - THE1B LTR MaLR 0 364 1 26 30 0 0 chr4 113906428 113906461 -88421886 + AT_rich Low_complexity Low_complexity 1 33 0 6870 178 77 49 chr4 113906814 113908491 -88419856 - L1MC3 LINE L1 -6 7779 6056 980 196 98 4 chr4 113908465 113908700 -88419647 - L1MA6 LINE L1 -1840 4306 4050 * 5211 174 31 20 chr4 113908694 113909363 -88418984 + L1MA6 LINE L1 4282 4943 -1357 2485 69 0 3 chr4 113909363 113909669 -88418678 + AluY SINE Alu 3 307 -4 5211 174 31 20 chr4 113909669 113910637 -88417710 + L1MA6 LINE L1 4943 5899 -401 243 0 0 0 chr4 113910637 113910664 -88417683 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2078 121 4 0 chr4 113910673 113910985 -88417362 + AluSx SINE Alu 1 313 0 5211 174 31 20 chr4 113910985 113911177 -88417170 + L1MA6 LINE L1 5906 6143 -157 * 15304 147 3 10 chr4 113911175 113913761 -88414586 - L1P LINE L1 -1475 4671 2103 2041 118 16 3 chr4 113913763 113914069 -88414278 + L1PA10 LINE L1 5855 6164 -4 2063 250 31 60 chr4 113914082 113914931 -88413416 - L1M4 LINE L1 -1241 4905 4082 214 149 0 106 chr4 113914943 113914990 -88413357 - L2 LINE L2 0 3272 3231 433 342 33 5 chr4 113915116 113915300 -88413047 + MIR SINE MIR 71 259 -3 463 335 42 41 chr4 113915433 113915773 -88412574 - LTR16A LTR ERVL -31 419 22 12891 172 34 10 chr4 113917630 113922983 -88405364 - L1MA3 LINE L1 0 7724 12 21 57 0 0 chr4 113924311 113924346 -88404001 + AT_rich Low_complexity Low_complexity 1 35 0 1328 301 65 13 chr4 113924670 113925129 -88403218 - MLT1J LTR MaLR -7 504 22 1212 329 26 34 chr4 113925464 113926079 -88402268 + L1PA13 LINE L1 788 1397 -6177 3438 226 48 53 chr4 113926487 113926996 -88401351 + L1PA13 LINE L1 2179 2689 -4895 2141 112 7 3 chr4 113926996 113927290 -88401057 + AluSp SINE Alu 1 295 -18 3438 226 48 53 chr4 113927290 113927337 -88401010 + L1PA13 LINE L1 2689 2735 -4849 2141 78 0 0 chr4 113927337 113927606 -88400741 + AluY SINE Alu 35 303 -8 3438 226 48 53 chr4 113927606 113928143 -88400204 + L1PA13 LINE L1 2735 3295 -4289 195 42 0 0 chr4 113928143 113928167 -88400180 + (CA)n Simple_repeat Simple_repeat 1 24 0 3438 226 48 53 chr4 113928167 113928416 -88399931 + L1PA13 LINE L1 3295 3544 -4040 3717 139 16 13 chr4 113928417 113929034 -88399313 - Tigger1 DNA MER2_type -887 1531 913 5128 124 28 0 chr4 113929049 113929898 -88398449 - L1PA15 LINE L1 -15 6150 5292 361 100 0 0 chr4 113929898 113929948 -88398399 - AluSc SINE Alu -21 278 229 5647 193 2 5 chr4 113929950 113931114 -88397233 - L1PA15 LINE L1 -837 5309 4150 4808 183 45 6 chr4 113931114 113932006 -88396341 - Tigger1 DNA MER2_type -1491 927 1 496 308 32 0 chr4 113932929 113933085 -88395262 - MIR SINE MIR -11 251 91 21 0 0 0 chr4 113933385 113933406 -88394941 + AT_rich Low_complexity Low_complexity 1 21 0 581 182 55 0 chr4 113933494 113933604 -88394743 + AluJb SINE Alu 179 294 -18 648 206 0 0 chr4 113934576 113934722 -88393625 + CT-rich Low_complexity Low_complexity 1 146 0 270 0 0 0 chr4 113935270 113935300 -88393047 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 826 178 0 0 chr4 113935319 113935448 -88392899 + FLAM_C SINE Alu 1 129 -14 1541 238 74 36 chr4 113935450 113935854 -88392493 - L1ME2 LINE L1 -53 6111 5683 222 118 0 0 chr4 113935854 113935888 -88392459 + (CA)n Simple_repeat Simple_repeat 1 34 0 1541 238 74 36 chr4 113935888 113935984 -88392363 - L1ME2 LINE L1 -481 5683 5592 13588 22 0 0 chr4 113936051 113938410 -88389937 - L1PA3 LINE L1 0 6155 3797 1445 219 45 61 chr4 113938416 113938579 -88389768 - L1ME2 LINE L1 -1051 5095 4931 2267 84 27 3 chr4 113938579 113938877 -88389470 - AluY SINE Alu -6 305 1 1445 219 45 61 chr4 113938877 113939206 -88389141 - L1ME2 LINE L1 -1215 4931 4611 184 262 19 0 chr4 113939281 113939384 -88388963 + (TG)n Simple_repeat Simple_repeat 2 106 0 261 236 0 0 chr4 113939386 113939441 -88388906 + MER4-int LTR ERV1 1111 1165 -5433 259 227 0 36 chr4 113939451 113939561 -88388786 + (TATG)n Simple_repeat Simple_repeat 1 106 0 1202 318 115 17 chr4 113939565 113940790 -88387557 - L1MEc LINE L1 -5013 1383 39 326 283 108 36 chr4 113940776 113941085 -88387262 - L1MC/D LINE L1 -480 5641 5311 * 227 204 28 37 chr4 113941104 113941212 -88387135 + (TTTA)n Simple_repeat Simple_repeat 3 109 0 785 325 60 46 chr4 113941213 113941886 -88386461 - L2 LINE L2 0 3313 2638 395 153 73 109 chr4 113942085 113942222 -88386125 - MER94 DNA DNA 0 134 3 1937 123 22 0 chr4 113942373 113942650 -88385697 - AluSq SINE Alu -18 295 13 230 232 58 0 chr4 113942795 113942864 -88385483 - L1MC5 LINE L1 -54 7907 7835 21 0 0 0 chr4 113943415 113943436 -88384911 + AT_rich Low_complexity Low_complexity 1 21 0 227 225 62 0 chr4 113943752 113943832 -88384515 - L1ME LINE L1 -355 5766 5682 545 322 49 18 chr4 113944292 113944578 -88383769 - L1ME LINE L1 -422 5699 5405 7078 54 2 0 chr4 113944596 113945765 -88382582 - L1PA7 LINE L1 -2 6152 4981 212 325 13 13 chr4 113946024 113946101 -88382246 + MIR SINE MIR 36 112 -150 660 245 0 0 chr4 113946347 113946498 -88381849 + L1PB4 LINE L1 5880 6030 -126 5803 114 51 62 chr4 113946500 113948129 -88380218 - pTR5 LTR ERV1 0 2438 743 461 256 8 0 chr4 113948129 113948254 -88380093 + L1PB4 LINE L1 6026 6151 -5 727 223 139 0 chr4 113948337 113948503 -88379844 + MER5A DNA MER1_type 1 189 0 375 258 59 86 chr4 113948535 113948756 -88379591 + MLT1L LTR MaLR 169 383 -232 194 0 39 0 chr4 113948843 113948869 -88379478 + (TA)n Simple_repeat Simple_repeat 2 28 0 2060 142 0 0 chr4 113948899 113949208 -88379139 - AluSx SINE Alu -3 309 1 964 306 134 21 chr4 113949326 113949943 -88378404 + L1MEd LINE L1 149 835 -5284 386 280 65 65 chr4 113949987 113950155 -88378192 - L2 LINE L2 -723 2591 2424 567 299 73 23 chr4 113950235 113950793 -88377554 + L1MEd LINE L1 2433 3018 -3111 262 259 19 0 chr4 113951315 113951369 -88376978 + L2 LINE L2 3250 3304 -9 201 132 0 0 chr4 113951533 113951571 -88376776 + (GA)n Simple_repeat Simple_repeat 2 39 0 1142 208 53 0 chr4 113951865 113952091 -88376256 - MER8 DNA MER2_type -1 238 1 1267 165 48 120 chr4 113953942 113954335 -88374012 - MLT1A1 LTR MaLR 0 365 1 27 29 0 0 chr4 113954522 113954556 -88373791 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr4 113954732 113954755 -88373592 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 113955547 113955569 -88372778 + AT_rich Low_complexity Low_complexity 1 22 0 241 229 0 0 chr4 113955696 113955744 -88372603 + GA-rich Low_complexity Low_complexity 1 48 0 195 254 28 56 chr4 113956082 113956153 -88372194 - L2 LINE L2 -488 2826 2758 * 247 325 202 20 chr4 113956094 113956297 -88372050 + MIR SINE MIR 23 262 0 182 294 35 24 chr4 113956332 113956417 -88371930 + L2 LINE L2 1330 1415 -1899 2455 72 0 0 chr4 113957553 113957859 -88370488 - AluY SINE Alu -5 306 1 258 81 0 0 chr4 113957987 113958024 -88370323 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr4 113958430 113958451 -88369896 + AT_rich Low_complexity Low_complexity 1 21 0 1930 153 10 3 chr4 113958905 113959212 -88369135 - AluSx SINE Alu -3 309 1 222 380 33 0 chr4 113961060 113961181 -88367166 + MIR SINE MIR 126 250 -12 244 353 12 24 chr4 113962052 113962137 -88366210 + L2 LINE L2 3100 3183 -89 2814 60 8 0 chr4 113962897 113963249 -88365098 + THE1A LTR MaLR 1 355 0 29 94 0 0 chr4 113963344 113963429 -88364918 + AT_rich Low_complexity Low_complexity 1 85 0 305 143 0 0 chr4 113963552 113963601 -88364746 - MIR SINE MIR -96 112 64 277 349 124 8 chr4 113963810 113963939 -88364408 - L2 LINE L2 -1 3271 3128 223 328 99 36 chr4 113964173 113964365 -88363982 + L2 LINE L2 2866 3069 -203 25 0 0 0 chr4 113964896 113964921 -88363426 + AT_rich Low_complexity Low_complexity 1 25 0 1861 113 7 34 chr4 113965082 113965399 -88362948 - AluSx SINE Alu 0 309 1 635 271 210 35 chr4 113967130 113967588 -88360759 - MLT1K LTR MaLR -8 580 13 1966 155 0 10 chr4 113968315 113968619 -88359728 + AluSx SINE Alu 1 301 -11 770 59 11 2 chr4 113968846 113968964 -88359383 - L1PA5 LINE L1 -1 6153 6037 825 314 112 29 chr4 113968964 113969375 -88358972 - L2 LINE L2 -41 3272 2828 1886 152 55 0 chr4 113969792 113970122 -88358225 + MER7A DNA MER2_type 1 346 0 1164 252 38 60 chr4 113971193 113971623 -88356724 - L1ME LINE L1 -438 5683 5256 388 355 38 35 chr4 113971646 113971964 -88356383 - L1ME LINE L1 -914 5232 4914 416 250 0 9 chr4 113971966 113972082 -88356265 + L1MA9 LINE L1 6158 6272 -40 370 290 35 72 chr4 113972168 113972544 -88355803 - L1ME LINE L1 -1310 4836 4475 2391 94 0 0 chr4 113972681 113973012 -88355335 - AluSc SINE Alu 0 331 1 663 284 95 31 chr4 113973170 113973653 -88354694 - L1ME LINE L1 -1935 4211 3698 707 344 93 26 chr4 113974134 113974680 -88353667 - HAL1b LINE L1 -711 637 55 1946 125 0 40 chr4 113975414 113975717 -88352630 - AluSx SINE Alu -21 291 1 401 0 20 0 chr4 113975810 113975859 -88352488 + (TG)n Simple_repeat Simple_repeat 1 50 0 23 0 0 0 chr4 113977402 113977425 -88350922 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 113978171 113978192 -88350155 + AT_rich Low_complexity Low_complexity 1 21 0 1793 209 23 23 chr4 113978325 113978713 -88349634 + MLT1B LTR MaLR 1 388 -2 289 180 60 60 chr4 113979066 113979166 -88349181 + MIR SINE MIR 163 262 0 194 128 26 0 chr4 113982721 113982760 -88345587 + (TA)n Simple_repeat Simple_repeat 1 40 0 1458 213 37 7 chr4 113982791 113983087 -88345260 - L1MB1 LINE L1 -22 6146 5842 887 222 71 13 chr4 113986024 113986249 -88342098 - MIR SINE MIR -21 241 4 23 68 0 0 chr4 113988987 113989031 -88339316 + AT_rich Low_complexity Low_complexity 1 44 0 575 305 15 89 chr4 113991517 113991786 -88336561 - MIR SINE MIR -12 250 2 315 266 11 158 chr4 113992403 113992587 -88335760 + MIR SINE MIR 50 206 -56 2559 30 0 3 chr4 113992993 113993288 -88335059 + AluY SINE Alu 1 294 -17 23 0 0 0 chr4 113994698 113994721 -88333626 + AT_rich Low_complexity Low_complexity 1 23 0 322 346 25 50 chr4 113994920 113995079 -88333268 - MIR3 SINE MIR -22 186 32 292 264 97 26 chr4 113995504 113995659 -88332688 + MER112 DNA MER1_type 1 166 -94 267 334 78 52 chr4 113996175 113996328 -88332019 + MIR SINE MIR 2 157 -65 2344 187 35 10 chr4 113997225 113997734 -88330613 - L1MC2 LINE L1 -11 6333 5812 416 328 127 45 chr4 113997994 113998500 -88329847 + L2 LINE L2 2282 2828 -486 346 293 23 4 chr4 113998506 113998603 -88329744 - MIR SINE MIR -112 96 1 260 287 11 11 chr4 113999751 113999838 -88328509 + MARNA DNA Mariner 272 358 -228 23 54 0 0 chr4 113999985 114000022 -88328325 + AT_rich Low_complexity Low_complexity 1 37 0 470 150 0 0 chr4 114000304 114000384 -88327963 - L1MA8 LINE L1 -339 5952 5873 305 172 32 11 chr4 114000384 114000463 -88327884 + L1MA7 LINE L1 6196 6290 -1 23 33 0 0 chr4 114000470 114000500 -88327847 + AT_rich Low_complexity Low_complexity 1 30 0 215 265 205 0 chr4 114001516 114001599 -88326748 - MIR SINE MIR 0 262 163 198 0 0 0 chr4 114001807 114001829 -88326518 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 326 331 144 0 chr4 114003840 114003979 -88324368 + L3 LINE CR1 218 376 -1201 1325 268 58 11 chr4 114004002 114004379 -88323968 + L2 LINE L2 2146 2540 -774 226 292 46 15 chr4 114005354 114005484 -88322863 + L1P LINE L1 4886 5019 -1127 854 300 60 32 chr4 114005566 114006195 -88322152 + L1ME3A LINE L1 5231 5885 -285 246 32 0 0 chr4 114006197 114006228 -88322119 + (TG)n Simple_repeat Simple_repeat 2 32 0 5454 160 49 6 chr4 114006260 114007906 -88320441 - L1MA6 LINE L1 -9 6291 4588 36 62 0 0 chr4 114008073 114008137 -88320210 + AT_rich Low_complexity Low_complexity 1 64 0 831 342 40 38 chr4 114008926 114009479 -88318868 + L2 LINE L2 2092 2645 -669 24 67 0 0 chr4 114009538 114009583 -88318764 + AT_rich Low_complexity Low_complexity 1 45 0 477 320 40 11 chr4 114009719 114009894 -88318453 + L2 LINE L2 2570 2749 -565 2364 80 13 0 chr4 114009950 114010252 -88318095 - AluY SINE Alu -5 306 1 346 281 54 65 chr4 114010282 114010467 -88317880 + MLT1J LTR MaLR 117 299 -212 228 327 10 10 chr4 114010986 114011087 -88317260 - MLT1K LTR MaLR -55 533 433 2312 233 52 11 chr4 114011106 114011745 -88316602 - L1MC4a LINE L1 0 7808 7144 489 117 48 0 chr4 114012181 114012284 -88316063 + GA-rich Low_complexity Low_complexity 1 108 0 1804 300 47 29 chr4 114014293 114015279 -88313068 - L1M4 LINE L1 -1814 4332 3330 4033 27 0 0 chr4 114015283 114015757 -88312590 - L1PA3 LINE L1 0 6155 5682 33 0 0 0 chr4 114015757 114015790 -88312557 + AT_rich Low_complexity Low_complexity 1 33 0 1611 144 6 66 chr4 114017472 114017791 -88310556 - AluSx SINE Alu -12 300 1 399 243 100 7 chr4 114017818 114017958 -88310389 + L1ME LINE L1 5578 5730 -391 38 22 0 0 chr4 114017993 114018038 -88310309 + AT_rich Low_complexity Low_complexity 1 45 0 677 296 135 4 chr4 114018529 114018759 -88309588 + MIR SINE MIR 3 262 0 674 214 75 25 chr4 114018943 114019144 -88309203 - MER115 DNA AcHobo -34 659 449 4200 90 32 3 chr4 114019181 114019827 -88308520 + L1MA2 LINE L1 2246 2910 -4655 9797 159 52 8 chr4 114019928 114022984 -88305363 + L1MA2 LINE L1 4518 7717 -6 2191 137 0 0 chr4 114023008 114023315 -88305032 + AluSx SINE Alu 1 307 -5 709 230 11 47 chr4 114023499 114023690 -88304657 - MER63A DNA MER1_type -26 184 1 1585 211 88 96 chr4 114023896 114024490 -88303857 - L1MC5 LINE L1 -46 7984 7398 1535 189 0 36 chr4 114024490 114024792 -88303555 + AluJb SINE Alu 1 291 -21 1585 211 88 96 chr4 114024792 114025039 -88303308 - L1MC5 LINE L1 -632 7398 7150 1396 262 131 49 chr4 114025114 114025620 -88302727 - L1MC5 LINE L1 -410 5821 6445 2026 74 30 0 chr4 114025620 114025918 -88302429 + AluSc SINE Alu 1 306 0 1396 262 131 49 chr4 114025918 114027100 -88301247 - L1MC5 LINE L1 215 6446 5362 5602 186 5 9 chr4 114027110 114029018 -88299329 - L1PB3 LINE L1 0 6154 4256 244 134 122 98 chr4 114028974 114029056 -88299291 + L1 LINE L1 3525 3608 -2538 * 1993 178 33 31 chr4 114029057 114029615 -88298732 - MLT2A2 LTR ERVL 0 554 1 3170 196 11 5 chr4 114029616 114030249 -88298098 + L1 LINE L1 3606 4242 -1904 367 331 76 46 chr4 114030257 114030586 -88297761 - L1MC5 LINE L1 -871 5344 5006 486 278 106 65 chr4 114030704 114031467 -88296880 - L1PB3 LINE L1 -1986 4160 3359 395 269 112 20 chr4 114031651 114032045 -88296302 - L1MC5 LINE L1 -2842 3373 2944 2195 121 0 0 chr4 114032147 114032444 -88295903 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr4 114032488 114032509 -88295838 + AT_rich Low_complexity Low_complexity 1 21 0 523 242 157 28 chr4 114034664 114034842 -88293505 - MIR SINE MIR -34 228 28 275 119 0 34 chr4 114035003 114035062 -88293285 + (CAT)n Simple_repeat Simple_repeat 3 59 0 362 316 76 44 chr4 114035191 114035508 -88292839 - L1MC5 LINE L1 -4689 1707 1381 229 196 0 39 chr4 114037173 114037224 -88291123 + L2 LINE L2 3195 3243 -70 987 162 11 38 chr4 114037225 114037410 -88290937 - FRAM SINE Alu -3 173 1 22 0 0 0 chr4 114037420 114037442 -88290905 + AT_rich Low_complexity Low_complexity 1 22 0 332 191 0 0 chr4 114037442 114037505 -88290842 - FLAM_A SINE Alu 0 133 71 189 211 96 0 chr4 114037511 114037563 -88290784 + L2 LINE L2 3257 3313 0 525 354 6 0 chr4 114038225 114038406 -88289941 + MIR SINE MIR 15 196 -66 3429 70 13 6 chr4 114039530 114039961 -88288386 - L1PA8 LINE L1 -278 5894 5458 1905 50 0 4 chr4 114039961 114040203 -88288144 + L1PA8 LINE L1 5927 6167 -5 3429 70 13 6 chr4 114040203 114040241 -88288106 - L1PA8 LINE L1 -714 5458 5422 21 36 0 0 chr4 114041416 114041444 -88286903 + AT_rich Low_complexity Low_complexity 1 28 0 376 123 27 0 chr4 114041739 114041812 -88286535 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 245 240 168 40 chr4 114044505 114044630 -88283717 - L2 LINE L2 -10 3303 3163 1547 301 121 33 chr4 114044631 114045474 -88282873 - L2 LINE L2 -993 2321 1405 450 0 0 0 chr4 114045722 114045772 -88282575 + (A)n Simple_repeat Simple_repeat 1 50 0 446 261 96 0 chr4 114045839 114045954 -88282393 - L2 LINE L2 0 3313 3188 434 56 0 42 chr4 114046301 114046372 -88281975 + (TTTTG)n Simple_repeat Simple_repeat 2 69 0 37 0 0 0 chr4 114047668 114047705 -88280642 + AT_rich Low_complexity Low_complexity 1 37 0 494 281 61 23 chr4 114047723 114047901 -88280446 - L1ME3A LINE L1 -67 6103 5919 192 364 45 45 chr4 114050180 114050268 -88278079 - L2 LINE L2 -32 3240 3153 180 0 0 0 chr4 114050931 114050951 -88277396 + (A)n Simple_repeat Simple_repeat 1 20 0 242 224 0 13 chr4 114052030 114052106 -88276241 + (TA)n Simple_repeat Simple_repeat 1 75 0 383 248 17 17 chr4 114052141 114052258 -88276089 + L1MB1 LINE L1 6047 6163 -5 784 259 69 19 chr4 114052515 114052731 -88275616 - MIR SINE MIR -27 235 9 238 135 0 0 chr4 114053029 114053066 -88275281 - L2 LINE L2 -1 3312 3276 441 114 23 11 chr4 114053619 114053707 -88274640 + GA-rich Low_complexity Low_complexity 2 90 0 631 239 29 7 chr4 114053784 114053922 -88274425 + MLT2F LTR ERVL 1 141 -522 1025 299 52 18 chr4 114053950 114054338 -88274009 + ERVL-F LTR ERVL 851 1251 -4513 552 266 71 0 chr4 114054351 114054505 -88273842 - MER58A DNA MER1_type 0 224 60 246 258 30 15 chr4 114054546 114054612 -88273735 - MER58A DNA MER1_type -40 67 1 2389 250 36 21 chr4 114054613 114055711 -88272636 + ERVL-F LTR ERVL 1259 2447 -3317 435 263 0 8 chr4 114055726 114055844 -88272503 + ERVL-F LTR ERVL 5634 5750 -14 1028 256 56 16 chr4 114055849 114056387 -88271960 + MLT2F LTR ERVL 1 663 0 277 371 65 53 chr4 114058543 114058657 -88269690 - L2 LINE L2 -1 3271 3153 2195 115 13 0 chr4 114058657 114058961 -88269386 + AluSc SINE Alu 1 308 -1 277 371 65 53 chr4 114058961 114059016 -88269331 - L2 LINE L2 -119 3153 3100 6279 191 57 40 chr4 114059052 114060502 -88267845 - MER52A LTR ERV1 0 1755 51 289 195 92 35 chr4 114060856 114060950 -88267397 - MER52A LTR ERV1 -1195 83 1 211 331 49 49 chr4 114061374 114061516 -88266831 + L2 LINE L2 2308 2449 -865 2707 257 132 43 chr4 114061532 114061714 -88266633 + L2 LINE L2 1859 2023 -1290 2250 117 0 3 chr4 114061714 114062022 -88266325 - AluSq SINE Alu -6 307 1 2707 257 132 43 chr4 114062022 114062220 -88266127 + L2 LINE L2 2023 2202 -1111 2329 121 54 8 chr4 114062220 114062593 -88265754 + MLT1B LTR MaLR 1 390 0 2707 257 132 43 chr4 114062593 114063099 -88265248 + L2 LINE L2 2202 2661 -652 189 0 0 0 chr4 114063099 114063120 -88265227 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2707 257 132 43 chr4 114063120 114063447 -88264900 + L2 LINE L2 2661 3156 -157 2003 160 0 0 chr4 114063449 114063762 -88264585 - AluSq SINE Alu 0 313 1 44 0 0 0 chr4 114063772 114063816 -88264531 + AT_rich Low_complexity Low_complexity 1 44 0 289 331 39 55 chr4 114064002 114064129 -88264218 + L2 LINE L2 3148 3272 0 327 272 89 38 chr4 114065514 114065672 -88262675 - MIR SINE MIR -74 188 23 819 153 18 37 chr4 114065792 114065955 -88262392 + MER106A DNA MER1_type 76 235 -1 23 33 0 0 chr4 114067108 114067138 -88261209 + AT_rich Low_complexity Low_complexity 1 30 0 305 286 0 13 chr4 114069833 114069910 -88258437 - L2 LINE L2 -6 3307 3232 244 367 39 16 chr4 114070957 114071085 -88257262 + L2 LINE L2 2929 3059 -254 591 264 86 83 chr4 114071096 114071433 -88256914 - MLT1J1 LTR MaLR -12 434 97 297 364 25 0 chr4 114071590 114071708 -88256639 + L2 LINE L2 3187 3307 -6 645 254 28 118 chr4 114071857 114072145 -88256202 - MIR SINE MIR 0 262 1 873 181 121 20 chr4 114072173 114072372 -88255975 + MER20 DNA MER1_type 1 219 0 191 314 0 0 chr4 114072878 114072929 -88255418 - MIR SINE MIR -126 82 32 21 57 0 0 chr4 114072999 114073034 -88255313 + AT_rich Low_complexity Low_complexity 1 35 0 442 325 34 34 chr4 114075359 114075593 -88252754 + MLT1J LTR MaLR 229 462 -49 21 0 0 0 chr4 114075957 114075978 -88252369 + AT_rich Low_complexity Low_complexity 1 21 0 230 255 20 0 chr4 114076258 114076309 -88252038 - MIR3 SINE MIR -48 160 109 385 256 13 77 chr4 114076388 114076544 -88251803 - MIR SINE MIR -35 227 82 1355 101 19 14 chr4 114076670 114076878 -88251469 + L1MA1 LINE L1 6064 6272 -30 25 0 0 0 chr4 114076904 114076929 -88251418 + AT_rich Low_complexity Low_complexity 1 25 0 246 262 0 0 chr4 114077023 114077107 -88251240 + (TA)n Simple_repeat Simple_repeat 1 84 0 42 20 0 0 chr4 114077206 114077255 -88251092 + AT_rich Low_complexity Low_complexity 1 49 0 216 264 0 0 chr4 114077877 114077930 -88250417 + GA-rich Low_complexity Low_complexity 2 54 0 1098 193 9 28 chr4 114078303 114078515 -88249832 - AluJb SINE Alu -20 292 85 309 308 8 0 chr4 114079059 114079176 -88249171 - L1MA10 LINE L1 -15 6319 6202 * 1207 113 0 0 chr4 114079173 114079351 -88248996 - L1PA13 LINE L1 -262 5906 5726 1518 89 5 0 chr4 114079351 114079562 -88248785 + L1PA13 LINE L1 5938 6152 -11 1144 230 67 13 chr4 114079577 114080480 -88247867 - L1ME1 LINE L1 -115 6051 4997 2387 130 60 19 chr4 114080480 114080912 -88247435 - LTR7 LTR ERV1 0 450 1 2770 98 11 32 chr4 114080912 114081352 -88246995 - HERVH LTR ERV1 0 7713 7283 6436 129 6 20 chr4 114081356 114082380 -88245967 - HERVH LTR ERV1 -2693 5020 4012 3150 166 4 14 chr4 114082356 114082915 -88245432 - HERVH LTR ERV1 -4108 3605 3053 * 11279 158 14 36 chr4 114082909 114085374 -88242973 - HERVH LTR ERV1 -4979 2734 1 2117 107 53 3 chr4 114085374 114085752 -88242595 - LTR7 LTR ERV1 0 450 10 1189 231 91 10 chr4 114085755 114086352 -88241995 - L1ME LINE L1 -616 5550 4902 1236 223 59 69 chr4 114086352 114086437 -88241910 - MLT1D LTR MaLR -105 400 316 571 77 26 0 chr4 114086437 114086515 -88241832 - MADE1 DNA Mariner 0 80 1 1236 223 59 69 chr4 114086515 114086833 -88241514 - MLT1D LTR MaLR -189 316 1 352 270 94 57 chr4 114087251 114087410 -88240937 - MIR SINE MIR -4 258 94 329 282 117 28 chr4 114087609 114087916 -88240431 - MLT1I LTR MaLR -2 407 19 22 0 0 0 chr4 114088455 114088477 -88239870 + AT_rich Low_complexity Low_complexity 1 22 0 887 192 71 102 chr4 114088741 114088797 -88239550 + MER33 DNA MER1_type 12 68 -2517 2219 108 3 0 chr4 114088797 114089093 -88239254 + AluSp SINE Alu 1 297 -16 887 192 71 102 chr4 114089093 114089359 -88238988 + MER33 DNA MER1_type 68 324 0 245 281 16 0 chr4 114089742 114089806 -88238541 + L2 LINE L2 3249 3313 0 197 245 41 0 chr4 114090414 114090463 -88237884 - MIR SINE MIR -94 168 118 1755 149 3 35 chr4 114090483 114090771 -88237576 + AluSx SINE Alu 3 281 -31 186 43 0 0 chr4 114090774 114090797 -88237550 + (GAAAA)n Simple_repeat Simple_repeat 4 26 0 195 391 131 16 chr4 114091195 114091568 -88236779 - L2 LINE L2 -386 2928 2513 3032 129 34 6 chr4 114091574 114092047 -88236300 - Tigger1 DNA MER2_type 0 2418 1933 * 10417 138 20 18 chr4 114092041 114092520 -88235827 - Tigger1 DNA MER2_type -696 1722 1246 2306 110 3 0 chr4 114092520 114092829 -88235518 + AluSx SINE Alu 1 310 -2 10417 138 20 18 chr4 114092829 114094067 -88234280 - Tigger1 DNA MER2_type -1172 1246 1 547 335 25 21 chr4 114094108 114094344 -88234003 - L2 LINE L2 -853 2461 2225 283 317 54 48 chr4 114094447 114094633 -88233714 - MIR SINE MIR -25 237 51 668 272 66 108 chr4 114095619 114096192 -88232155 - MLT1H LTR MaLR 0 549 1 333 312 154 36 chr4 114097045 114097266 -88231081 + HAL1b LINE L1 37 283 -1065 257 278 35 0 chr4 114097305 114097459 -88230888 + L1MC4 LINE L1 6614 6703 -1339 * 258 235 0 82 chr4 114097449 114097547 -88230800 - L1MC4 LINE L1 -1339 6703 6614 246 326 0 0 chr4 114097553 114097642 -88230705 - L1MC4 LINE L1 -1339 6703 6615 296 194 0 82 chr4 114097659 114097757 -88230590 - L1MC4 LINE L1 -1339 6703 6614 369 244 47 0 chr4 114097761 114097847 -88230500 - L1MC4 LINE L1 -1339 6703 6614 180 250 0 0 chr4 114097958 114098006 -88230341 + (TA)n Simple_repeat Simple_repeat 1 48 0 258 322 0 0 chr4 114098007 114098097 -88230250 - L1MC4 LINE L1 -1339 6703 6614 234 326 0 0 chr4 114098058 114098144 -88230203 + L1MC4 LINE L1 6615 6700 -1342 * 234 326 0 0 chr4 114098126 114098246 -88230101 + L1MC4 LINE L1 6615 6700 -1342 * 242 307 23 0 chr4 114098239 114098327 -88230020 + L1MC4 LINE L1 6614 6703 -1339 * 260 152 0 0 chr4 114098285 114098331 -88230016 - L1MC4 LINE L1 -1339 6703 6658 275 239 23 0 chr4 114098335 114098423 -88229924 - L1MC4 LINE L1 -1339 6703 6614 249 267 44 0 chr4 114098390 114098480 -88229867 + L1MC4 LINE L1 6609 6702 -1340 * 192 259 0 0 chr4 114098483 114098537 -88229810 + (TATATG)n Simple_repeat Simple_repeat 2 55 0 246 271 0 62 chr4 114098537 114098633 -88229714 - L1MC4 LINE L1 -1339 6703 6614 312 221 0 0 chr4 114098638 114098715 -88229632 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 944 240 18 18 chr4 114098754 114098971 -88229376 + HAL1b LINE L1 341 557 -791 481 229 179 81 chr4 114099132 114099552 -88228795 + HAL1b LINE L1 558 1018 -330 212 282 0 14 chr4 114099565 114099636 -88228711 + (TA)n Simple_repeat Simple_repeat 2 71 0 303 228 59 15 chr4 114099637 114099773 -88228574 + HAL1b LINE L1 1021 1162 -186 277 220 0 64 chr4 114099996 114100105 -88228242 + L1ME4a LINE L1 5978 6079 -42 2055 120 19 48 chr4 114100605 114100980 -88227367 - THE1B LTR MaLR 0 364 1 410 318 121 6 chr4 114101490 114101663 -88226684 - MIR SINE MIR -50 212 20 230 209 256 0 chr4 114102547 114102633 -88225714 + L2 LINE L2 3197 3304 -9 2777 139 43 26 chr4 114102716 114103249 -88225098 - L1MC1 LINE L1 -18 6315 5774 180 0 0 0 chr4 114104343 114104363 -88223984 + (TA)n Simple_repeat Simple_repeat 2 21 0 564 172 0 0 chr4 114104391 114104478 -88223869 - Tigger5 DNA MER2_type 0 2323 2237 295 200 20 0 chr4 114104528 114104578 -88223769 - Tigger5 DNA MER2_type 0 2323 2273 243 161 0 113 chr4 114104569 114104631 -88223716 - Tigger5 DNA MER2_type -2268 55 1 * 201 26 79 0 chr4 114107897 114107935 -88220412 + (TTG)n Simple_repeat Simple_repeat 2 42 0 26 0 0 0 chr4 114108622 114108648 -88219699 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 114110058 114110079 -88218268 + AT_rich Low_complexity Low_complexity 1 21 0 1764 234 105 22 chr4 114110928 114111559 -88216788 + L1ME1 LINE L1 4616 5298 -848 6321 89 2 0 chr4 114111563 114112921 -88215426 - L1PA14 LINE L1 -3 6158 4808 5741 163 17 9 chr4 114112921 114113847 -88214500 - L1PA12 LINE L1 -6644 937 4 2880 204 17 14 chr4 114113859 114114492 -88213855 + L1ME1 LINE L1 5312 5946 -220 1258 145 5 10 chr4 114114493 114114700 -88213647 + MER2 DNA MER2_type 1 206 -139 23 0 0 0 chr4 114114727 114114750 -88213597 + AT_rich Low_complexity Low_complexity 1 23 0 453 237 125 7 chr4 114114808 114115016 -88213331 + L1MA10 LINE L1 5942 6327 -5 1554 231 117 28 chr4 114115022 114115247 -88213100 + L1ME2 LINE L1 5427 5631 -533 1342 181 0 8 chr4 114115247 114115485 -88212862 + MER46A DNA MER2_type 1 236 0 1554 231 117 28 chr4 114115485 114115823 -88212524 + L1ME2 LINE L1 5631 6040 -124 1028 177 76 0 chr4 114115816 114116014 -88212333 - L1PB4 LINE L1 -11 6145 5933 * 295 203 29 0 chr4 114116013 114116082 -88212265 + L1ME2 LINE L1 6085 6155 -9 * 322 167 24 0 chr4 114116147 114116231 -88212116 + (TA)n Simple_repeat Simple_repeat 2 87 0 812 267 41 0 chr4 114116241 114116533 -88211814 + L1MB8 LINE L1 4235 4538 -1608 * 4450 205 31 6 chr4 114116531 114117468 -88210879 - L1 LINE L1 -1012 5134 4167 2139 123 10 0 chr4 114117468 114117768 -88210579 - AluSq SINE Alu -10 303 1 4450 205 31 6 chr4 114117768 114117873 -88210474 - L1 LINE L1 -1979 4167 4066 2471 73 116 20 chr4 114117902 114118352 -88209995 + LTR14B LTR ERVK 1 608 0 45021 55 27 17 chr4 114118352 114124048 -88204299 + HERVK14 LTR ERVK 1 5813 -132 352 158 0 18 chr4 114124048 114124105 -88204242 + MER41C LTR ERV1 6 61 -493 45021 55 27 17 chr4 114124105 114124240 -88204107 + HERVK14 LTR ERVK 5813 5945 0 2283 86 158 8 chr4 114124243 114124691 -88203656 + LTR14B LTR ERVK 1 608 0 7103 237 43 17 chr4 114124692 114126464 -88201883 - L1 LINE L1 -2136 3834 1900 2259 113 7 0 chr4 114126464 114126773 -88201574 - AluSq SINE Alu -2 311 1 7103 237 43 17 chr4 114126773 114127551 -88200796 - L1 LINE L1 -4070 1900 1144 2701 200 57 15 chr4 114127572 114127787 -88200560 + L1MB8 LINE L1 4573 4778 -1368 2259 202 32 18 chr4 114127787 114128283 -88200064 + MLT1D LTR MaLR 1 503 -2 2701 200 57 15 chr4 114128283 114128786 -88199561 + L1MB8 LINE L1 4778 5321 -825 6728 208 36 21 chr4 114128798 114131597 -88196750 + L1MA4 LINE L1 8 2824 -3504 * 6839 173 29 8 chr4 114131594 114131976 -88196371 + L1MA4 LINE L1 4102 4475 -2007 300 91 0 0 chr4 114131976 114132020 -88196327 + (CA)n Simple_repeat Simple_repeat 1 44 0 6839 173 29 8 chr4 114132020 114132077 -88196270 + L1MA4 LINE L1 4475 4529 -1953 1718 181 0 20 chr4 114132077 114132376 -88195971 + AluJb SINE Alu 1 293 -19 6839 173 29 8 chr4 114132376 114134260 -88194087 + L1MA4 LINE L1 4529 6478 -4 1325 166 75 23 chr4 114134249 114134556 -88193791 + L1MB8 LINE L1 5312 5634 -544 * 620 167 50 10 chr4 114134561 114134720 -88193627 + L1MB8 LINE L1 5828 5992 -209 294 365 102 47 chr4 114134871 114135447 -88192900 - L2 LINE L2 -2215 1099 492 25 0 0 0 chr4 114135679 114135704 -88192643 + AT_rich Low_complexity Low_complexity 1 25 0 251 293 0 0 chr4 114136168 114136226 -88192121 - L2 LINE L2 0 3272 3215 27 0 0 0 chr4 114136385 114136412 -88191935 + AT_rich Low_complexity Low_complexity 1 27 0 3851 140 10 63 chr4 114137867 114138595 -88189752 + LTR8 LTR ERV1 1 689 -2 21 0 0 0 chr4 114140508 114140529 -88187818 + AT_rich Low_complexity Low_complexity 1 21 0 3500 134 22 4 chr4 114140814 114141358 -88186989 - MER41C LTR ERV1 0 554 1 41 0 0 0 chr4 114141409 114141450 -88186897 + AT_rich Low_complexity Low_complexity 1 41 0 3063 169 16 81 chr4 114141562 114142301 -88186046 + LTR8 LTR ERV1 1 691 0 256 346 15 15 chr4 114142509 114142714 -88185633 - L1M4 LINE L1 -1325 4821 4617 267 203 43 0 chr4 114142755 114142824 -88185523 + MER116 DNA Mariner 2 73 -7 354 194 43 91 chr4 114142876 114143062 -88185285 - L1M4 LINE L1 -1620 4526 4350 928 177 64 56 chr4 114143069 114143318 -88185029 + MSTB1 LTR MaLR 1 251 -181 7589 68 25 7 chr4 114143719 114144708 -88183639 - LTR13 LTR ERVK 0 1007 1 559 282 54 49 chr4 114144776 114145431 -88182916 - L1MEd LINE L1 -868 1622 898 7753 6 0 0 chr4 114145434 114146527 -88181820 + L1HS LINE L1 5063 6155 0 31 0 0 0 chr4 114146527 114146558 -88181789 + AT_rich Low_complexity Low_complexity 1 31 0 5472 21 0 0 chr4 114146558 114147250 -88181097 + L1PA4 LINE L1 5476 6167 0 409 72 43 0 chr4 114147273 114147342 -88181005 + A-rich Low_complexity Low_complexity 2 73 0 786 200 0 0 chr4 114147344 114147504 -88180843 - MER58 DNA MER1_type -3 2417 2258 1687 141 62 25 chr4 114147507 114147861 -88180486 + L1MA9 LINE L1 5946 6312 0 1528 168 64 9 chr4 114147870 114148216 -88180131 + Charlie1 DNA MER1_type 2261 2625 -136 23 0 0 0 chr4 114148226 114148249 -88180098 + AT_rich Low_complexity Low_complexity 1 23 0 205 235 20 39 chr4 114148279 114148381 -88179966 + T-rich Low_complexity Low_complexity 2 101 0 888 200 20 0 chr4 114148569 114148764 -88179583 - MER3 DNA MER1_type -10 199 1 390 302 84 36 chr4 114148996 114149271 -88179076 - L1MEd LINE L1 -5764 355 68 297 272 32 16 chr4 114149966 114150091 -88178256 - L1ME LINE L1 -317 5804 5678 21 0 0 0 chr4 114150236 114150257 -88178090 + AT_rich Low_complexity Low_complexity 1 21 0 233 289 44 33 chr4 114150655 114150745 -88177602 + L2 LINE L2 3206 3296 -17 356 121 0 0 chr4 114150847 114150905 -88177442 + L1MCa LINE L1 2141 2198 -4228 468 177 0 26 chr4 114151681 114151794 -88176553 + L1MCa LINE L1 3698 3807 -2619 1846 163 30 0 chr4 114151802 114152139 -88176208 - Tigger1 DNA MER2_type -2071 347 1 218 167 0 0 chr4 114153000 114153036 -88175311 - L2 LINE L2 -5 3267 3232 680 119 10 0 chr4 114153759 114153860 -88174487 + AluJ/FLAM SINE Alu 1 102 -210 2219 98 26 50 chr4 114153864 114154200 -88174147 + THE1C LTR MaLR 8 336 -39 2014 133 17 7 chr4 114154200 114154500 -88173847 - AluSx SINE Alu -9 303 1 2219 98 26 50 chr4 114154500 114154540 -88173807 + THE1C LTR MaLR 336 375 0 1528 92 0 163 chr4 114154540 114154878 -88173469 + THE1C-int LTR MaLR 1 283 -1297 308 332 123 34 chr4 114154929 114155164 -88173183 - L2 LINE L2 -510 2804 2549 228 35 0 0 chr4 114155975 114156004 -88172343 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 293 374 36 7 chr4 114157142 114157281 -88171066 - MIR SINE MIR -118 144 2 2399 104 0 0 chr4 114157731 114158038 -88170309 - AluSx SINE Alu -5 307 1 277 287 115 25 chr4 114158269 114158426 -88169921 - MLT1H1 LTR MaLR 0 555 385 227 310 0 0 chr4 114158961 114159019 -88169328 + MIR SINE MIR 73 130 -78 1386 229 26 9 chr4 114159019 114159368 -88168979 + MLT1A2 LTR MaLR 1 355 -19 22 88 0 0 chr4 114159434 114159491 -88168856 + AT_rich Low_complexity Low_complexity 1 57 0 5314 250 35 21 chr4 114159680 114159985 -88168362 + L1MC1 LINE L1 2629 2928 -3218 2398 43 0 3 chr4 114159985 114160303 -88168044 - AluY SINE Alu 0 317 1 5314 250 35 21 chr4 114160303 114160532 -88167815 + L1MC1 LINE L1 2928 3152 -2994 1966 154 13 3 chr4 114160532 114160838 -88167509 + AluSx SINE Alu 1 309 -3 5314 250 35 21 chr4 114160838 114161138 -88167209 + L1MC1 LINE L1 3152 3447 -2699 2348 108 3 0 chr4 114161138 114161445 -88166902 + AluSp SINE Alu 1 308 -5 5314 250 35 21 chr4 114161445 114162039 -88166308 + L1MC1 LINE L1 3447 4032 -2114 2656 42 3 0 chr4 114162039 114162349 -88165998 - AluY SINE Alu 0 311 1 5314 250 35 21 chr4 114162349 114163190 -88165157 + L1MC1 LINE L1 4032 4955 -1191 180 0 0 0 chr4 114163190 114163210 -88165137 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5314 250 35 21 chr4 114163210 114163357 -88164990 + L1MC1 LINE L1 4955 5099 -1047 1733 167 83 35 chr4 114163414 114163937 -88164410 + MLT2A2 LTR ERVL 1 554 0 5414 190 14 3 chr4 114164333 114165518 -88162829 + L1MC1 LINE L1 5122 6319 -14 369 0 0 0 chr4 114165820 114165861 -88162486 + (CA)n Simple_repeat Simple_repeat 1 41 0 292 299 112 9 chr4 114166771 114166878 -88161469 - L2 LINE L2 -18 3254 3137 627 264 203 11 chr4 114167673 114167934 -88160413 + L2 LINE L2 2999 3309 -4 266 291 24 61 chr4 114168078 114168243 -88160104 + L2 LINE L2 2896 3054 -218 3161 183 12 25 chr4 114168276 114168954 -88159393 - LTR1 LTR ERV1 -116 669 1 223 190 52 35 chr4 114169012 114169070 -88159277 + L2 LINE L2 3169 3227 -86 3422 96 28 0 chr4 114169431 114169930 -88158417 + LTR10D LTR ERV1 1 513 0 1533 281 74 73 chr4 114169956 114171136 -88157211 + HERVI LTR ERV1 24 1204 -6581 25235 208 39 36 chr4 114171317 114177935 -88150412 + HERVI LTR ERV1 1132 7769 -16 3517 102 6 2 chr4 114177951 114178462 -88149885 + LTR10D LTR ERV1 1 513 0 1137 229 103 79 chr4 114178624 114179118 -88149229 + MLT1F LTR MaLR 37 542 0 283 273 0 0 chr4 114181056 114181111 -88147236 + L2 LINE L2 3250 3304 -9 556 80 11 11 chr4 114181118 114181206 -88147141 + (GGAA)n Simple_repeat Simple_repeat 2 89 0 198 0 0 0 chr4 114181611 114181633 -88146714 + (A)n Simple_repeat Simple_repeat 1 22 0 309 51 0 0 chr4 114184073 114184112 -88144235 + (CA)n Simple_repeat Simple_repeat 2 40 0 2277 158 50 19 chr4 114184117 114184536 -88143811 - Tigger2a DNA MER2_type -1 433 2 246 232 64 0 chr4 114184536 114184661 -88143686 + (TA)n Simple_repeat Simple_repeat 1 133 0 24 0 0 0 chr4 114184661 114184685 -88143662 + AT_rich Low_complexity Low_complexity 1 24 0 1907 166 0 10 chr4 114184870 114185178 -88143169 + AluJb SINE Alu 1 305 -7 33 25 0 0 chr4 114185605 114185645 -88142702 + AT_rich Low_complexity Low_complexity 1 40 0 341 277 84 48 chr4 114185700 114185866 -88142481 + MLT2B1 LTR ERVL 83 254 -266 2142 114 29 10 chr4 114185866 114186173 -88142174 - AluSq SINE Alu 0 313 1 3712 199 44 58 chr4 114186176 114187056 -88141291 + ERVL LTR ERVL 116 983 -4781 942 70 78 0 chr4 114188008 114188137 -88140210 - MER85 DNA T2_type 0 139 1 494 217 135 53 chr4 114188610 114188817 -88139530 - MLT2B1 LTR ERVL -272 248 25 764 278 68 19 chr4 114188819 114189082 -88139265 - L2 LINE L2 -290 3023 2731 198 197 53 79 chr4 114189418 114189494 -88138853 - MIR SINE MIR -60 202 129 2142 112 33 7 chr4 114191387 114191691 -88136656 + AluSx SINE Alu 1 312 0 184 360 35 0 chr4 114191922 114192008 -88136339 + L3 LINE CR1 1435 1523 -54 300 344 74 8 chr4 114192348 114192470 -88135877 + L2 LINE L2 3126 3255 -17 420 291 67 76 chr4 114196943 114197080 -88131267 + L1MEc LINE L1 44 181 -6215 2218 99 0 3 chr4 114197080 114197362 -88130985 + AluSp SINE Alu 1 281 -32 887 49 0 42 chr4 114197363 114197505 -88130842 + (GAAA)n Simple_repeat Simple_repeat 4 139 0 420 291 67 76 chr4 114197505 114198261 -88130086 + L1MEc LINE L1 180 931 -5465 1874 196 3 0 chr4 114198481 114198792 -88129555 + AluJb SINE Alu 1 312 0 20602 119 17 26 chr4 114198887 114203350 -88124997 + L1P3 LINE L1 2 4509 -1952 395 181 15 55 chr4 114203351 114203481 -88124866 + LTR10A LTR ERV1 437 609 0 4654 224 68 41 chr4 114203481 114205018 -88123329 + HERVI LTR ERV1 2 1580 -6205 4725 91 57 18 chr4 114205068 114205559 -88122788 + HERV17 LTR ERV1 716 1186 -5710 438 20 0 0 chr4 114205559 114205610 -88122737 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 4725 91 57 18 chr4 114205610 114206070 -88122277 + HERV17 LTR ERV1 1186 1720 -5176 315 238 167 0 chr4 114206072 114206156 -88122191 - LTR8 LTR ERV1 -438 253 156 11250 155 7 18 chr4 114206156 114209300 -88119047 + Harlequin LTR ERV1 1815 6623 -26 335 274 189 0 chr4 114209327 114209539 -88118808 + LTR10A LTR ERV1 1 252 -357 1516 161 76 13 chr4 114209581 114209885 -88118462 + LTR10A LTR ERV1 181 503 -106 7981 88 12 0 chr4 114209903 114211835 -88116512 + L1PA7 LINE L1 4181 6150 -4 4570 150 24 11 chr4 114211871 114212758 -88115589 + L1PA16 LINE L1 5262 6166 0 354 172 39 86 chr4 114212989 114213065 -88115282 + L1M4 LINE L1 2304 2373 -3773 1722 192 0 7 chr4 114213065 114213362 -88114985 + AluJo SINE Alu 1 295 -17 354 172 39 86 chr4 114213362 114213413 -88114934 + L1M4 LINE L1 2373 2425 -3721 1931 155 10 10 chr4 114213993 114214296 -88114051 + AluJo SINE Alu 1 303 -9 189 371 21 31 chr4 114214489 114214586 -88113761 + L2 LINE L2 1860 1955 -1359 1194 268 29 18 chr4 114214638 114214932 -88113415 + MER69 DNA AcHobo 1 301 -2225 2369 103 133 5 chr4 114214932 114215309 -88113038 - MSTA LTR MaLR -3 425 1 1194 268 29 18 chr4 114215309 114215354 -88112993 + MER69 DNA AcHobo 301 344 -2182 262 298 0 29 chr4 114215738 114215842 -88112505 + MER69 DNA AcHobo 1845 1945 -581 1783 255 89 6 chr4 114215875 114216413 -88111934 - MLT1G LTR MaLR -7 583 1 923 223 196 8 chr4 114216413 114216810 -88111537 + MER69 DNA AcHobo 1979 2450 -76 356 198 0 12 chr4 114217955 114218041 -88110306 + (TA)n Simple_repeat Simple_repeat 2 86 0 216 294 0 0 chr4 114218354 114218405 -88109942 - L2 LINE L2 0 3313 3263 481 219 35 35 chr4 114218486 114218600 -88109747 + L2 LINE L2 3200 3313 0 184 411 16 8 chr4 114218841 114218970 -88109377 - L2 LINE L2 -555 2759 2630 494 353 114 30 chr4 114219917 114220381 -88107966 - L2 LINE L2 -685 2629 2127 359 248 105 9 chr4 114220486 114220591 -88107756 + L2 LINE L2 3199 3313 0 307 179 15 0 chr4 114220728 114220795 -88107552 - Looper DNA T2_type -1419 139 72 688 231 38 43 chr4 114220869 114221055 -88107292 + MIR SINE MIR 32 216 -46 1189 226 56 41 chr4 114221062 114221456 -88106891 + Looper DNA T2_type 793 1192 -366 536 188 14 35 chr4 114221456 114221600 -88106747 + Looper DNA T2_type 1394 1534 -24 225 94 0 0 chr4 114221633 114221665 -88106682 + (A)n Simple_repeat Simple_repeat 1 32 0 291 285 41 8 chr4 114222185 114222308 -88106039 - LTR67 LTR ERVL 0 557 431 1858 262 66 36 chr4 114222707 114223662 -88104685 + L2 LINE L2 2336 3312 -1 685 326 83 21 chr4 114224368 114224849 -88103498 + MLT1J LTR MaLR 1 511 0 472 168 53 0 chr4 114225015 114225110 -88103237 + U6 snRNA snRNA 1 100 -7 5290 181 17 8 chr4 114225110 114227101 -88101246 + L1PA16 LINE L1 4016 6031 -135 18792 94 40 3 chr4 114227101 114229712 -88098635 - Charlie3 DNA MER1_type -4 2706 1 5290 181 17 8 chr4 114229712 114229849 -88098498 + L1PA16 LINE L1 6031 6165 -1 24 53 0 0 chr4 114229968 114230006 -88098341 + AT_rich Low_complexity Low_complexity 1 38 0 991 308 39 23 chr4 114230006 114230396 -88097951 + L2 LINE L2 2234 2629 -685 1478 221 59 34 chr4 114230400 114230816 -88097531 + MLT1C LTR MaLR 6 435 -32 927 164 69 161 chr4 114230816 114231195 -88097152 + MER2 DNA MER2_type 1 344 0 1478 221 59 34 chr4 114231195 114231221 -88097126 + MLT1C LTR MaLR 435 459 -8 817 247 90 92 chr4 114231227 114231842 -88096505 + L2 LINE L2 2621 3255 -58 1358 200 22 9 chr4 114231842 114232162 -88096185 - MER33 DNA MER1_type 0 324 1 817 247 90 92 chr4 114232162 114232221 -88096126 + L2 LINE L2 3255 3313 0 9372 167 23 14 chr4 114234033 114234417 -88093930 - L1PBa LINE L1 -1877 4985 4606 280 43 21 21 chr4 114234417 114234464 -88093883 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 9372 167 23 14 chr4 114234464 114234486 -88093861 - L1PBa LINE L1 -2256 4606 4586 2500 80 0 6 chr4 114234486 114234799 -88093548 - AluY SINE Alu 0 311 1 9372 167 23 14 chr4 114234799 114237955 -88090392 - L1PBa LINE L1 -2276 4586 1395 644 259 11 5 chr4 114237957 114238146 -88090201 - L1PBa LINE L1 -6668 195 6 2086 144 0 6 chr4 114239149 114239461 -88088886 - AluSx SINE Alu -2 310 1 250 225 272 53 chr4 114239923 114240092 -88088255 + MER34 LTR ERV1 4 108 -434 1160 186 47 92 chr4 114240166 114240647 -88087700 + LTR56 LTR ERV1 1 437 0 860 266 40 27 chr4 114240655 114240952 -88087395 + MER39 LTR ERV1 407 707 0 314 355 85 5 chr4 114241922 114242111 -88086236 - MIR SINE MIR 0 262 59 251 243 271 45 chr4 114242141 114242318 -88086029 - MIR SINE MIR 0 262 46 26 30 0 0 chr4 114243517 114243550 -88084797 + AT_rich Low_complexity Low_complexity 1 33 0 1358 165 0 9 chr4 114245139 114245357 -88082990 + AluJb SINE Alu 59 274 -38 456 19 0 0 chr4 114245359 114245412 -88082935 + (TC)n Simple_repeat Simple_repeat 1 53 0 252 0 0 0 chr4 114245411 114245439 -88082908 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 189 279 0 0 chr4 114246712 114246755 -88081592 - L2 LINE L2 0 3272 3230 * 698 294 60 81 chr4 114246747 114246838 -88081509 + L2 LINE L2 2659 2750 -563 923 215 43 0 chr4 114246838 114247047 -88081300 + MER20 DNA MER1_type 2 219 0 698 294 60 81 chr4 114247047 114247371 -88080976 + L2 LINE L2 2750 3074 -239 1474 187 153 7 chr4 114247371 114247665 -88080682 + MER1B DNA MER1_type 1 337 0 698 294 60 81 chr4 114247665 114247808 -88080539 + L2 LINE L2 3074 3218 -95 586 301 17 50 chr4 114248037 114248276 -88080071 - MIR SINE MIR -18 244 14 7560 156 16 10 chr4 114249399 114251505 -88076842 + L1PA13 LINE L1 4041 6160 -3 242 143 82 0 chr4 114251773 114251822 -88076525 + L1MC4 LINE L1 6650 6702 -1340 388 230 138 22 chr4 114252453 114252688 -88075659 + MER46C DNA MER2_type 34 327 -11 2456 126 8 5 chr4 114253337 114253711 -88074636 - THE1C LTR MaLR 0 375 1 467 247 119 60 chr4 114254180 114254415 -88073932 - MIR SINE MIR -8 254 6 1510 183 45 7 chr4 114254490 114254779 -88073568 + AluJb SINE Alu 1 300 -12 1015 226 58 30 chr4 114254984 114254999 -88073348 + MSTD LTR MaLR 3 16 -380 2094 159 86 8 chr4 114254999 114255396 -88072951 + MSTA LTR MaLR 1 428 0 1015 226 58 30 chr4 114255396 114255734 -88072613 + MSTD LTR MaLR 16 396 0 294 280 54 11 chr4 114256120 114256213 -88072134 + L2 LINE L2 3171 3267 -46 26 0 0 0 chr4 114256267 114256293 -88072054 + AT_rich Low_complexity Low_complexity 1 26 0 705 237 104 62 chr4 114258642 114259055 -88069292 + MER57A LTR ERV1 1 403 0 267 231 0 0 chr4 114259159 114259211 -88069136 - LTR16B LTR ERVL 0 464 413 732 243 153 36 chr4 114259218 114259711 -88068636 + MLT1E LTR MaLR 8 593 0 890 262 205 7 chr4 114259729 114260031 -88068316 - LTR16B LTR ERVL -93 371 10 489 343 74 28 chr4 114260842 114261233 -88067114 + ERVL LTR ERVL 1402 1810 -3954 432 344 26 0 chr4 114261284 114261438 -88066909 + ERVL LTR ERVL 1908 2065 -3699 370 333 44 36 chr4 114261474 114261726 -88066621 + ERVL LTR ERVL 2150 2403 -3361 670 313 87 14 chr4 114262513 114262788 -88065559 + LTR16C LTR ERVL 195 489 -2 426 278 117 38 chr4 114262805 114263251 -88065096 + L1ME2 LINE L1 1874 2354 -4042 977 264 92 35 chr4 114263417 114264399 -88063948 + L1ME2 LINE L1 5175 6233 -6 210 355 87 22 chr4 114264959 114265097 -88063250 + L2 LINE L2 2698 2844 -470 257 75 25 0 chr4 114265154 114265194 -88063153 + (CA)n Simple_repeat Simple_repeat 1 41 0 359 266 284 0 chr4 114265265 114265370 -88062977 + L1MEc LINE L1 3740 3793 -2422 1657 67 9 27 chr4 114265370 114265595 -88062752 + AluY SINE Alu 85 305 -6 359 266 284 0 chr4 114265595 114265706 -88062641 + L1MEc LINE L1 3793 3849 -2366 7303 36 63 0 chr4 114265706 114266646 -88061701 - L1PA5 LINE L1 -1 6153 5202 359 266 284 0 chr4 114266646 114266899 -88061448 + L1MEc LINE L1 3849 3978 -2237 4878 108 0 16 chr4 114266899 114267465 -88060882 - LTR8 LTR ERV1 0 691 137 2739 0 0 0 chr4 114267465 114267757 -88060590 + AluYa5 SINE Alu 1 292 -19 4878 108 0 16 chr4 114267757 114267892 -88060455 - LTR8 LTR ERV1 -554 137 1 359 266 284 0 chr4 114267892 114268112 -88060235 + L1MEc LINE L1 3978 4492 -1723 896 287 72 17 chr4 114268252 114268628 -88059719 + L1M3e LINE L1 125 833 -6656 * 1730 314 48 20 chr4 114268625 114269258 -88059089 + L1M3e LINE L1 1374 2075 -5491 734 152 15 8 chr4 114269257 114269389 -88058958 - L1M2 LINE L1 -5377 1472 1340 * 2850 200 38 40 chr4 114269403 114270330 -88058017 + L1M3e LINE L1 3238 4161 -3404 1491 80 9 38 chr4 114270330 114270543 -88057804 + AluY SINE Alu 85 291 -20 2850 200 38 40 chr4 114270543 114270842 -88057505 + L1M3e LINE L1 4161 4459 -3106 566 366 71 55 chr4 114270868 114271471 -88056876 + L1MA4 LINE L1 10 622 -6227 2399 96 0 3 chr4 114271553 114271867 -88056480 + AluSq SINE Alu 1 313 0 252 322 33 50 chr4 114271934 114272114 -88056233 + L1MA4 LINE L1 708 884 -5965 1320 249 45 54 chr4 114272307 114273568 -88054779 + L1MA4 LINE L1 999 2205 -4643 725 67 19 0 chr4 114273565 114273670 -88054677 - L1P LINE L1 -1739 4407 4301 * 6965 54 5 6 chr4 114273666 114275499 -88052848 + L1PA7 LINE L1 4198 6140 -14 31 0 0 0 chr4 114275499 114275530 -88052817 + AT_rich Low_complexity Low_complexity 1 31 0 10943 213 26 18 chr4 114275533 114275850 -88052497 + L1 LINE L1 2510 2823 -3323 2108 116 0 27 chr4 114275850 114276151 -88052196 + AluSx SINE Alu 1 293 -19 10943 213 26 18 chr4 114276151 114276990 -88051357 + L1 LINE L1 2823 3654 -2492 285 75 0 0 chr4 114276990 114277030 -88051317 + (CA)n Simple_repeat Simple_repeat 1 40 0 10943 213 26 18 chr4 114277030 114278652 -88049695 + L1 LINE L1 3654 5312 -834 3211 188 10 3 chr4 114278652 114279338 -88049009 + L1MA4 LINE L1 3769 4459 -2389 1823 188 21 0 chr4 114279339 114279728 -88048619 + L1MA4 LINE L1 5081 5477 -1371 567 157 0 0 chr4 114279722 114279811 -88048536 + L1MA4 LINE L1 6608 6696 -306 * 49 18 0 0 chr4 114279811 114279867 -88048480 + AT_rich Low_complexity Low_complexity 1 56 0 924 149 10 20 chr4 114279867 114280062 -88048285 + L1MA4 LINE L1 6809 7001 -1 5623 99 16 0 chr4 114280062 114280866 -88047481 + L1PA13 LINE L1 5344 6160 -3 255 339 123 8 chr4 114281892 114282022 -88046325 - L2 LINE L2 -6 3266 3122 1891 188 17 3 chr4 114282054 114282410 -88045937 - MLT1A1 LTR MaLR 0 365 5 303 191 32 43 chr4 114282852 114282946 -88045401 - L2 LINE L2 -1615 1699 1607 273 188 0 0 chr4 114283080 114283128 -88045219 - MLT2B1 LTR ERVL -8 512 465 396 207 12 0 chr4 114283155 114283237 -88045110 - MLT2B2 LTR ERVL -41 474 392 1265 219 26 0 chr4 114283393 114283704 -88044643 - MER33 DNA MER1_type 0 324 6 248 170 57 0 chr4 114284008 114284061 -88044286 + MADE1 DNA Mariner 25 80 0 2481 148 71 24 chr4 114285100 114285608 -88042739 - L1MA7 LINE L1 -158 6133 5602 * 4511 240 18 106 chr4 114285594 114287269 -88041078 - L1M3b LINE L1 -4753 1528 1 360 250 88 56 chr4 114288655 114288815 -88039532 + MIR SINE MIR 29 193 -69 2099 111 0 29 chr4 114288848 114289164 -88039183 + AluSq SINE Alu 1 307 -6 377 310 0 9 chr4 114289487 114289600 -88038747 + (CCA)n Simple_repeat Simple_repeat 3 114 0 399 92 0 0 chr4 114290773 114290838 -88037509 + (TC)n Simple_repeat Simple_repeat 2 66 0 27 0 0 0 chr4 114291997 114292024 -88036323 + AT_rich Low_complexity Low_complexity 1 27 0 2500 103 30 11 chr4 114292725 114293093 -88035254 - THE1C LTR MaLR 0 375 1 267 103 0 0 chr4 114293577 114293616 -88034731 + (CA)n Simple_repeat Simple_repeat 1 39 0 1890 128 44 3 chr4 114293657 114293953 -88034394 - AluSq SINE Alu -5 308 1 404 301 22 0 chr4 114294859 114294995 -88033352 - MER103 DNA DNA -25 141 3 966 90 15 0 chr4 114296207 114296340 -88032007 - L1PA7 LINE L1 -3 6151 6017 5078 50 3 0 chr4 114296340 114296965 -88031382 + L1PA7 LINE L1 5406 6032 -122 353 290 14 48 chr4 114297027 114297172 -88031175 + L2 LINE L2 3172 3311 -2 275 258 52 39 chr4 114298094 114298249 -88030098 - Charlie7 DNA MER1_type -2455 157 1 485 339 35 0 chr4 114300553 114300727 -88027620 + MER5A DNA MER1_type 8 187 -2 224 278 0 19 chr4 114300874 114300928 -88027419 + MIR SINE MIR 21 73 -135 * 308 269 96 0 chr4 114300927 114301031 -88027316 - L2 LINE L2 0 3313 3200 1513 159 92 32 chr4 114301496 114301810 -88026537 + MER44D DNA MER2_type 7 609 0 264 59 0 0 chr4 114302660 114302694 -88025653 + (A)n Simple_repeat Simple_repeat 1 34 0 1240 218 128 40 chr4 114303458 114303881 -88024466 + MLT1C LTR MaLR 6 465 -2 374 260 32 81 chr4 114304036 114304159 -88024188 - L2 LINE L2 -1 3312 3196 4565 238 121 37 chr4 114304753 114306376 -88021971 - L1P3 LINE L1 -4704 1754 8 363 264 72 8 chr4 114306769 114306894 -88021453 - L1ME3A LINE L1 -208 5962 5830 324 109 0 0 chr4 114307853 114307899 -88020448 + MLT2C2 LTR ERVL 419 464 0 2763 243 33 13 chr4 114309169 114309842 -88018505 + Zaphod DNA AcHobo 20 705 -3326 2639 166 61 95 chr4 114309842 114310687 -88017660 - LTR1 LTR ERV1 0 785 7 392 173 69 17 chr4 114310693 114310924 -88017423 + Zaphod DNA AcHobo 701 943 -3088 1336 186 120 3 chr4 114311041 114311374 -88016973 + Zaphod DNA AcHobo 3601 3972 -59 2071 243 54 23 chr4 114311380 114311952 -88016395 + MER90 LTR ERV1 25 614 0 362 293 20 10 chr4 114312229 114312328 -88016019 - L2 LINE L2 -28 3285 3186 27 0 0 0 chr4 114312615 114312642 -88015705 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr4 114313105 114313126 -88015221 + AT_rich Low_complexity Low_complexity 1 21 0 12298 161 22 23 chr4 114313817 114317252 -88011095 - L1MA5 LINE L1 -6 7713 4286 678 203 11 44 chr4 114317262 114317444 -88010903 - L1MA5 LINE L1 -3891 3674 3499 2123 118 0 7 chr4 114317676 114317964 -88010383 - AluSp SINE Alu -26 287 2 711 297 113 41 chr4 114317972 114318504 -88009843 - MLT1G LTR MaLR -7 583 14 326 321 71 0 chr4 114320008 114320148 -88008199 + L2 LINE L2 2646 2795 -519 39 38 0 0 chr4 114321969 114322022 -88006325 + AT_rich Low_complexity Low_complexity 1 53 0 244 293 24 65 chr4 114322224 114322250 -88006097 - MIR SINE MIR 0 262 236 1945 164 43 3 chr4 114322250 114322597 -88005750 + MLT1A1 LTR MaLR 1 361 -4 244 293 24 65 chr4 114322597 114322693 -88005654 - MIR SINE MIR -26 236 145 355 296 10 112 chr4 114322745 114322951 -88005396 + L1MEd LINE L1 964 1148 -4971 2409 127 28 2 chr4 114323647 114324040 -88004307 - MER57A LTR ERV1 0 403 1 432 340 38 55 chr4 114324380 114324727 -88003620 + HAL1 LINE L1 1044 1384 -1123 432 334 39 59 chr4 114324872 114324902 -88003445 + HAL1b LINE L1 505 534 -814 1680 220 25 54 chr4 114324902 114325383 -88002964 - MLT1C LTR MaLR 0 467 1 432 334 39 59 chr4 114325383 114325396 -88002951 + HAL1b LINE L1 534 546 -802 342 0 0 0 chr4 114325396 114325434 -88002913 + (TA)n Simple_repeat Simple_repeat 2 39 0 432 334 39 59 chr4 114325434 114325796 -88002551 + HAL1b LINE L1 546 903 -445 658 328 74 18 chr4 114326022 114326480 -88001867 + L1MEd LINE L1 2127 2610 -3519 231 297 45 33 chr4 114326542 114326963 -88001384 + L1MEd LINE L1 2863 3288 -2841 433 304 135 25 chr4 114327322 114327871 -88000476 + L1MEd LINE L1 3695 4303 -1826 2133 135 0 10 chr4 114328054 114328365 -87999982 + AluSx SINE Alu 1 308 -4 183 80 0 0 chr4 114329339 114329364 -87998983 + (T)n Simple_repeat Simple_repeat 1 25 0 299 289 8 70 chr4 114329953 114330081 -87998266 - L2 LINE L2 -4 3309 3190 361 264 0 50 chr4 114331322 114331443 -87996904 - L1MC4 LINE L1 -1336 6706 6592 238 230 222 32 chr4 114331811 114331937 -87996410 - L2 LINE L2 -1 3312 3163 338 326 89 11 chr4 114332480 114332670 -87995677 + MIR SINE MIR 40 244 -18 2361 116 25 8 chr4 114332675 114333028 -87995319 + THE1C LTR MaLR 1 359 -16 297 248 102 70 chr4 114333426 114333583 -87994764 + MLT1L LTR MaLR 121 282 -333 440 252 18 0 chr4 114333725 114333836 -87994511 + MLT1L LTR MaLR 491 603 -12 608 269 78 12 chr4 114334916 114335161 -87993186 - LTR33 LTR ERVL 0 521 261 207 288 25 25 chr4 114337642 114337722 -87990625 - L2 LINE L2 -1018 2296 2217 919 190 27 88 chr4 114337865 114338110 -87990237 - L1MC4a LINE L1 -962 6846 6616 378 61 0 0 chr4 114338110 114338159 -87990188 + (TG)n Simple_repeat Simple_repeat 2 50 0 919 190 27 88 chr4 114338159 114338176 -87990171 - L1MC4a LINE L1 -1192 6616 6600 402 198 85 133 chr4 114340047 114340290 -87988057 - MER39 LTR ERV1 -264 443 8 305 286 44 44 chr4 114340660 114340842 -87987505 - L1ME3A LINE L1 -36 6134 5953 1170 232 70 26 chr4 114340856 114341197 -87987150 - LTR16A LTR ERVL 0 450 95 1272 249 124 5 chr4 114341257 114341691 -87986656 - L1ME3A LINE L1 -227 5943 5458 247 244 47 35 chr4 114341837 114341923 -87986424 - MIR SINE MIR -1 261 175 686 216 49 31 chr4 114342006 114342168 -87986179 - MIR SINE MIR -75 187 23 30 45 0 0 chr4 114342178 114342222 -87986125 + AT_rich Low_complexity Low_complexity 1 44 0 209 270 48 0 chr4 114342464 114342527 -87985820 + MIR SINE MIR 172 237 -25 264 307 93 7 chr4 114342803 114342943 -87985404 - MIR SINE MIR -14 248 97 1478 179 70 72 chr4 114342953 114343410 -87984937 - MER31B LTR ERV1 0 543 11 566 211 168 21 chr4 114344930 114345120 -87983227 - MER46C DNA MER2_type -120 218 1 541 326 87 21 chr4 114345418 114345660 -87982687 + MIR SINE MIR 2 259 -3 196 304 29 14 chr4 114346064 114346133 -87982214 + MIR3 SINE MIR 128 197 -11 23 33 0 0 chr4 114346988 114347018 -87981329 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr4 114348706 114348729 -87979618 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2471 57 7 3 chr4 114349321 114349621 -87978726 + AluY SINE Alu 1 301 -10 1191 158 11 0 chr4 114350103 114350287 -87978060 + AluJo SINE Alu 1 186 -126 233 191 59 59 chr4 114350306 114350374 -87977973 + HAL1 LINE L1 2014 2081 -426 520 267 23 0 chr4 114350389 114350520 -87977827 - MIR SINE MIR 0 262 129 335 215 221 19 chr4 114350643 114350801 -87977546 + HAL1 LINE L1 2291 2480 -27 21 0 0 0 chr4 114350937 114350958 -87977389 + AT_rich Low_complexity Low_complexity 1 21 0 285 261 36 63 chr4 114351023 114351134 -87977213 + MIR3 SINE MIR 95 202 -6 742 167 116 60 chr4 114351361 114351577 -87976770 - L1ME3A LINE L1 0 6170 5943 280 250 23 0 chr4 114351615 114351703 -87976644 + (TA)n Simple_repeat Simple_repeat 2 91 0 956 224 50 29 chr4 114352479 114352549 -87975798 - MIR SINE MIR -5 257 190 1687 152 70 18 chr4 114352549 114352891 -87975456 - MER46B DNA MER2_type -1 235 1 956 224 50 29 chr4 114352891 114353061 -87975286 - MIR SINE MIR -72 190 12 1380 156 165 18 chr4 114353145 114353472 -87974875 - THE1C LTR MaLR 0 375 1 8148 100 44 37 chr4 114353481 114354773 -87973574 - HSMAR2 DNA Mariner -1 1301 1 279 270 0 40 chr4 114356164 114356238 -87972109 - MER5B DNA MER1_type -70 108 38 2281 78 10 0 chr4 114357569 114357864 -87970483 - AluY SINE Alu -13 298 1 1299 246 176 42 chr4 114358029 114358579 -87969768 - MLT1E3 LTR MaLR 0 624 1 23 54 0 0 chr4 114359139 114359176 -87969171 + AT_rich Low_complexity Low_complexity 1 37 0 518 352 75 46 chr4 114359277 114359692 -87968655 - L2 LINE L2 -19 3253 2827 315 356 88 44 chr4 114359779 114360099 -87968248 + L1MEd LINE L1 10 343 -5776 539 331 17 65 chr4 114360224 114360580 -87967767 + L1MEd LINE L1 509 847 -5272 2522 63 0 25 chr4 114361836 114362155 -87966192 + AluY SINE Alu 1 311 0 286 200 114 19 chr4 114362404 114362509 -87965838 - L1ME4a LINE L1 -199 5922 5808 552 125 0 11 chr4 114363004 114363092 -87965255 - MER20 DNA MER1_type 0 219 133 247 329 0 39 chr4 114365054 114365209 -87963138 + CT-rich Low_complexity Low_complexity 3 151 0 396 195 168 0 chr4 114367391 114367504 -87960843 - L1ME4a LINE L1 -27 6094 5963 180 0 0 0 chr4 114367551 114367571 -87960776 + (TC)n Simple_repeat Simple_repeat 2 21 0 1425 182 24 37 chr4 114367597 114367893 -87960454 - MLT1A2 LTR MaLR -7 367 76 225 167 0 91 chr4 114367912 114367978 -87960369 - L1ME4a LINE L1 -215 5906 5847 372 297 103 16 chr4 114367984 114368169 -87960178 - L1ME4a LINE L1 -304 5817 5617 1335 213 78 11 chr4 114368691 114369052 -87959295 + L1MD2 LINE L1 5965 6349 -10 480 272 54 22 chr4 114370433 114370617 -87957730 - MLT1I LTR MaLR -201 208 19 2392 102 14 11 chr4 114370690 114371044 -87957303 - THE1A LTR MaLR 0 355 1 10833 100 29 0 chr4 114371044 114372580 -87955767 - THE1A-int LTR MaLR 0 1580 1 2373 107 14 11 chr4 114372580 114372934 -87955413 - THE1A LTR MaLR 0 355 1 188 350 61 62 chr4 114373085 114373550 -87954797 - L2 LINE L2 -213 3059 2383 235 260 0 0 chr4 114374501 114374551 -87953796 + LTR67 LTR ERVL 501 550 -7 1914 124 41 59 chr4 114376689 114377028 -87951319 - MER7A DNA MER2_type -15 331 1 383 250 0 50 chr4 114377712 114377812 -87950535 - MIR SINE MIR 0 262 168 471 344 60 19 chr4 114377938 114378330 -87950017 + L1M4 LINE L1 4282 4701 -1445 307 152 71 4 chr4 114378340 114378431 -87949916 + MLT1H1 LTR MaLR 461 539 -10 229 216 141 60 chr4 114378433 114378618 -87949729 - MER34B LTR ERV1 0 565 366 1764 103 21 0 chr4 114378655 114378888 -87949459 - AluSx SINE Alu -74 238 1 206 140 0 60 chr4 114378904 114378954 -87949393 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2001 185 30 25 chr4 114378979 114379373 -87948974 + MSTD LTR MaLR 1 396 0 399 199 0 0 chr4 114379557 114379653 -87948694 - MER34 LTR ERV1 -446 100 10 966 229 5 24 chr4 114379958 114380168 -87948179 + MER58A DNA MER1_type 19 224 0 2236 119 0 0 chr4 114380544 114380847 -87947500 - AluSg SINE Alu -7 303 1 184 305 0 17 chr4 114382370 114382429 -87945918 + MER5A DNA MER1_type 123 180 -9 1916 190 56 62 chr4 114383925 114384477 -87943870 + MER44D DNA MER2_type 1 604 -1 2245 125 0 0 chr4 114384596 114384907 -87943440 - AluSq SINE Alu -2 311 1 243 0 0 0 chr4 114385161 114385188 -87943159 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 501 258 123 19 chr4 114385591 114385746 -87942601 - MIR SINE MIR -65 197 27 5226 46 1 5 chr4 114385863 114386510 -87941837 - L1PA6 LINE L1 -5 6149 5505 544 367 48 0 chr4 114386552 114386759 -87941588 - MIR SINE MIR 0 262 46 282 354 94 8 chr4 114387010 114387137 -87941210 + MER5A DNA MER1_type 1 138 -51 912 233 64 4 chr4 114387143 114387379 -87940968 - MLT1H LTR MaLR -280 269 20 1951 193 41 22 chr4 114387536 114388028 -87940319 + Charlie7 DNA MER1_type 1504 2004 -608 16274 112 32 55 chr4 114388030 114388661 -87939686 - Tigger4(Zombi) DNA MER2_type 0 2731 2087 2012 143 3 0 chr4 114388661 114388955 -87939392 - AluSx SINE Alu -17 295 1 16274 112 32 55 chr4 114388955 114391118 -87937229 - Tigger4(Zombi) DNA MER2_type -644 2087 2 532 253 154 37 chr4 114391126 114391502 -87936845 + Charlie7 DNA MER1_type 2012 2441 -171 1991 163 14 3 chr4 114391502 114391858 -87936489 + MER46B DNA MER2_type 2 236 0 532 253 154 37 chr4 114391858 114391889 -87936458 + Charlie7 DNA MER1_type 2441 2467 -145 1503 175 36 0 chr4 114391941 114392215 -87936132 + L1MB3 LINE L1 5450 5733 -447 779 240 128 45 chr4 114392220 114392579 -87935768 - MER57B LTR ERV1 -5 429 41 1481 207 17 0 chr4 114392602 114392901 -87935446 + L1MB3 LINE L1 5720 6023 -160 534 174 31 0 chr4 114393298 114393396 -87934951 + MER61B-int LTR ERV1 290 390 -4827 * 23110 95 16 19 chr4 114393395 114396861 -87931486 + MER61B-int LTR ERV1 1747 5217 0 1359 194 7 42 chr4 114396883 114397166 -87931181 + MER61B LTR ERV1 124 396 -29 627 117 180 0 chr4 114397182 114397310 -87931037 + L1MB4 LINE L1 6027 6177 -3 1250 129 0 0 chr4 114397312 114397482 -87930865 - AluSq SINE Alu -86 227 58 491 232 40 24 chr4 114397498 114397623 -87930724 + MIR SINE MIR 27 153 -109 230 230 110 30 chr4 114397795 114397895 -87930452 - L1ME4a LINE L1 -49 6072 5965 23151 134 8 6 chr4 114398064 114402696 -87925651 - L1PA10 LINE L1 -10 6158 1522 2389 155 31 12 chr4 114403369 114403789 -87924558 + MSTA LTR MaLR 1 428 0 9043 176 34 3 chr4 114403789 114405390 -87922957 + MSTA-int LTR MaLR 1 1651 0 2430 147 51 5 chr4 114405390 114405799 -87922548 + MSTA LTR MaLR 1 428 0 277 277 193 18 chr4 114406280 114406446 -87921901 + L2 LINE L2 2116 2310 -1004 2515 74 0 0 chr4 114406509 114406819 -87921528 - AluY SINE Alu -1 310 1 284 385 102 23 chr4 114406890 114407233 -87921114 + L2 LINE L2 2383 2752 -562 1092 188 31 8 chr4 114407381 114407642 -87920705 - L1MA8 LINE L1 -5 6286 6020 236 289 115 10 chr4 114407764 114407868 -87920479 + L2 LINE L2 3156 3270 -2 2155 95 13 30 chr4 114408910 114409214 -87919133 + AluSg SINE Alu 1 299 -11 308 285 161 8 chr4 114410212 114410342 -87918005 + MIR3 SINE MIR 20 169 -39 1043 184 159 92 chr4 114410486 114410856 -87917491 + MSTD LTR MaLR 2 396 0 545 304 82 6 chr4 114411287 114411458 -87916889 + MIR SINE MIR 33 216 -46 197 368 88 16 chr4 114412320 114412445 -87915902 - L2 LINE L2 -616 2698 2565 563 311 0 0 chr4 114412501 114412652 -87915695 + MIR SINE MIR 2 152 -110 454 229 31 0 chr4 114412677 114412773 -87915574 + MER96 DNA MER1_type? 77 175 0 241 307 0 13 chr4 114412776 114412851 -87915496 + MIR SINE MIR 151 224 -38 188 329 58 70 chr4 114412873 114413116 -87915231 - L2 LINE L2 -791 2523 2284 333 0 0 0 chr4 114413619 114413656 -87914691 + (TG)n Simple_repeat Simple_repeat 2 38 0 1850 150 7 3 chr4 114414075 114414362 -87913985 - AluSx SINE Alu -24 288 1 2443 124 20 0 chr4 114414483 114414839 -87913508 - THE1B LTR MaLR 0 364 2 213 260 13 13 chr4 114414861 114414938 -87913409 + A-rich Low_complexity Low_complexity 2 78 0 10645 30 1 0 chr4 114415047 114417082 -87911265 + L1PA3 LINE L1 4115 6152 -3 214 182 0 23 chr4 114417090 114417134 -87911213 + GA-rich Low_complexity Low_complexity 3 45 0 333 296 204 37 chr4 114417343 114417637 -87910710 + HAL1b LINE L1 324 666 -682 4768 171 30 10 chr4 114418319 114419406 -87908941 + L1PB4 LINE L1 4678 5808 -348 249 33 0 0 chr4 114419406 114419436 -87908911 + (CA)n Simple_repeat Simple_repeat 2 31 0 4768 171 30 10 chr4 114419436 114419785 -87908562 + L1PB4 LINE L1 5808 6149 -7 22 0 0 0 chr4 114419988 114420010 -87908337 + AT_rich Low_complexity Low_complexity 1 22 0 223 279 173 46 chr4 114420072 114420269 -87908078 - L2 LINE L2 -1279 2035 1814 374 318 30 66 chr4 114420419 114420617 -87907730 + MLT1K LTR MaLR 90 280 -308 234 258 65 0 chr4 114420642 114420704 -87907643 + MER91C DNA MER1_type 38 103 -37 405 266 79 56 chr4 114420722 114420974 -87907373 + MLT1K LTR MaLR 284 541 -47 445 256 113 6 chr4 114423704 114423864 -87904483 + L1MC4a LINE L1 5673 5849 -1959 410 368 77 16 chr4 114424854 114425283 -87903064 - L1 LINE L1 -2415 3731 3277 186 133 0 0 chr4 114425582 114425612 -87902735 + (TCTCCC)n Simple_repeat Simple_repeat 1 30 0 673 189 74 57 chr4 114425939 114426114 -87902233 + MER5B DNA MER1_type 1 178 0 1126 174 76 133 chr4 114427186 114427583 -87900764 - MLT1A2 LTR MaLR 0 374 1 234 162 0 0 chr4 114427587 114427624 -87900723 - MIR SINE MIR -90 118 82 977 286 126 27 chr4 114430156 114430569 -87897778 - L2 LINE L2 -9 3304 2851 387 244 189 8 chr4 114430559 114430797 -87897550 - L2 LINE L2 -1135 2179 1899 * 306 292 62 10 chr4 114430815 114430911 -87897436 - L2 LINE L2 -1528 1786 1686 303 104 0 0 chr4 114430996 114431044 -87897303 + (CA)n Simple_repeat Simple_repeat 1 48 0 454 213 107 122 chr4 114431437 114431685 -87896662 + MIR SINE MIR 8 248 -14 180 200 0 0 chr4 114432009 114432039 -87896308 + MER5A DNA MER1_type 1 30 -159 247 323 125 11 chr4 114433345 114433460 -87894887 + MIR SINE MIR 10 135 -73 517 297 126 42 chr4 114433645 114433884 -87894463 + MIR SINE MIR 4 262 0 320 279 115 0 chr4 114433873 114433977 -87894370 - MIR SINE MIR -101 161 46 * 6857 55 8 0 chr4 114435908 114436890 -87891457 - L1PA5 LINE L1 -37 6117 5129 543 274 150 35 chr4 114437303 114437529 -87890818 - MIR SINE MIR 0 262 11 251 266 13 13 chr4 114437945 114438024 -87890323 + (TA)n Simple_repeat Simple_repeat 2 80 0 766 261 22 11 chr4 114438121 114438301 -87890046 - MER5A DNA MER1_type 0 189 8 505 338 107 32 chr4 114439351 114440019 -87888328 - L2 LINE L2 0 3313 2561 1661 193 112 33 chr4 114440019 114440501 -87887846 + MLT2B1 LTR ERVL 1 520 0 505 338 107 32 chr4 114440501 114440596 -87887751 - L2 LINE L2 -752 2561 2475 564 285 71 24 chr4 114442555 114443018 -87885329 - L1M4 LINE L1 -2878 3268 2784 2660 251 56 23 chr4 114443214 114444203 -87884144 - L1MC4a LINE L1 -747 5399 5006 486 270 52 0 chr4 114644215 114644330 -87684017 - MER5A DNA MER1_type -67 122 2 1741 117 9 92 chr4 114644354 114644679 -87683668 + AluSx SINE Alu 1 298 -14 269 177 0 16 chr4 114644701 114644763 -87683584 + L1M LINE L1 5365 5425 -872 588 255 90 0 chr4 114644870 114645058 -87683289 + L1MC4 LINE L1 6798 7002 -1040 383 98 0 0 chr4 114645230 114645291 -87683056 + Alu SINE Alu 240 300 -2 338 242 21 11 chr4 114645698 114645793 -87682554 + MLT1A2 LTR MaLR 1 96 -278 3224 154 52 14 chr4 114647788 114648527 -87679820 + L1MC1 LINE L1 5162 5928 -405 273 93 52 0 chr4 114648530 114648583 -87679764 + L1MC1 LINE L1 6282 6343 -1 214 215 11 43 chr4 114648963 114649056 -87679291 + A-rich Low_complexity Low_complexity 5 94 0 29 28 0 0 chr4 114649576 114649612 -87678735 + AT_rich Low_complexity Low_complexity 1 36 0 424 226 37 79 chr4 114650380 114650544 -87677803 - MIR SINE MIR -15 247 91 643 259 32 21 chr4 114650582 114650771 -87677576 - MIR SINE MIR 0 262 72 31 26 0 0 chr4 114652614 114652652 -87675695 + AT_rich Low_complexity Low_complexity 1 38 0 2003 229 66 62 chr4 114653777 114654507 -87673840 + MER21B LTR ERV1 7 739 -124 389 293 88 20 chr4 114655042 114655269 -87673078 + MIR SINE MIR 3 244 -18 2971 77 0 64 chr4 114655304 114655770 -87672577 + MLT2A1 LTR ERVL 1 436 -8 336 259 71 9 chr4 114656406 114656518 -87671829 + L2 LINE L2 3190 3308 -5 207 328 15 15 chr4 114656950 114657017 -87671330 - L2 LINE L2 -669 2645 2579 1761 155 30 26 chr4 114657446 114657750 -87670597 - AluJo SINE Alu -6 306 2 194 338 36 36 chr4 114657786 114657925 -87670422 - L2 LINE L2 -556 2758 2620 321 191 29 0 chr4 114658079 114658147 -87670200 + L1MD3 LINE L1 7730 7799 -196 1124 153 45 5 chr4 114658540 114658742 -87669605 + MER2 DNA MER2_type 1 210 -135 370 203 0 0 chr4 114658775 114658839 -87669508 + MER2 DNA MER2_type 272 335 -10 40853 47 6 1 chr4 114658996 114665113 -87663234 + L1PA4 LINE L1 3 6155 0 1323 193 53 48 chr4 114665308 114665707 -87662640 + L1MCc LINE L1 69 469 -5954 2023 220 56 60 chr4 114665804 114666591 -87661756 + L1MCc LINE L1 648 1431 -4992 733 120 0 9 chr4 114666595 114666703 -87661644 - AluSg/x SINE Alu -15 297 191 840 275 102 31 chr4 114666718 114667398 -87660949 + L1MCc LINE L1 1447 2174 -4767 21 36 0 0 chr4 114669080 114669108 -87659239 + AT_rich Low_complexity Low_complexity 1 28 0 938 257 87 0 chr4 114669225 114669501 -87658846 + MER82 DNA MER2_type 348 647 -6 510 218 24 16 chr4 114670342 114670466 -87657881 - MER5B DNA MER1_type -53 125 1 4320 123 71 28 chr4 114671116 114671825 -87656522 + MER4E LTR ERV1 1 745 -34 1789 67 5 5 chr4 114671825 114672048 -87656299 - AluY SINE Alu -18 293 71 4320 123 71 28 chr4 114672048 114672081 -87656266 + MER4E LTR ERV1 745 775 -4 219 324 42 78 chr4 114672132 114672274 -87656073 - L2 LINE L2 -2 3270 3134 241 26 26 26 chr4 114672890 114672929 -87655418 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1210 217 71 9 chr4 114673122 114673445 -87654902 + MER2 DNA MER2_type 2 344 0 242 205 77 39 chr4 114673778 114673856 -87654491 - L2 LINE L2 -39 3233 3153 22 0 0 0 chr4 114674092 114674114 -87654233 + AT_rich Low_complexity Low_complexity 1 22 0 897 201 0 12 chr4 114675213 114675377 -87652970 + FAM SINE Alu 4 165 -10 346 337 153 18 chr4 114675506 114676185 -87652162 + L2 LINE L2 2056 2826 -488 227 312 53 24 chr4 114676226 114676396 -87651951 + L2 LINE L2 2909 3083 -189 281 336 141 46 chr4 114676542 114677567 -87650780 + L2 LINE L2 2139 3272 0 581 266 149 9 chr4 114678166 114678380 -87649967 - MIR SINE MIR -12 250 7 225 298 140 35 chr4 114678428 114678542 -87649805 - L2 LINE L2 -9 3263 3138 * 352 230 274 25 chr4 114678540 114678744 -87649603 + MIR SINE MIR 8 262 0 5635 113 28 11 chr4 114678778 114680073 -87648274 + L1PA11 LINE L1 4811 6174 0 1183 171 44 9 chr4 114680984 114681212 -87647135 - AluJo SINE Alu -17 295 60 26 0 0 0 chr4 114681632 114681658 -87646689 + AT_rich Low_complexity Low_complexity 1 26 0 5459 103 8 2 chr4 114681885 114682720 -87645627 - L1P LINE L1 -1474 4672 3833 6050 80 32 25 chr4 114682720 114683666 -87644681 + L1PA10 LINE L1 5217 6168 0 634 245 129 52 chr4 114683740 114684289 -87644058 + MLT1F1 LTR MaLR 1 555 -12 1232 184 239 11 chr4 114684665 114685041 -87643306 + MLT1C LTR MaLR 6 467 0 2494 185 88 9 chr4 114685350 114685907 -87642440 + L1MCa LINE L1 29 629 -5797 494 292 53 45 chr4 114686016 114686506 -87641841 + L1ME LINE L1 4497 4990 -1156 875 242 71 18 chr4 114686565 114686904 -87641443 + HAL1b LINE L1 345 701 -647 341 238 143 20 chr4 114686922 114687069 -87641278 + HAL1b LINE L1 769 933 -415 337 308 17 0 chr4 114687111 114687231 -87641116 + L1ME LINE L1 5482 5603 -518 968 235 106 35 chr4 114687428 114687768 -87640579 + MLT1A1 LTR MaLR 1 364 -1 579 292 68 10 chr4 114688344 114688550 -87639797 - MIR SINE MIR -39 223 7 578 264 224 14 chr4 114688539 114688816 -87639531 - L2 LINE L2 -1 3312 2978 * 1669 167 47 21 chr4 114688926 114689309 -87639038 + L1M4 LINE L1 5327 5719 -465 * 9155 154 32 34 chr4 114689308 114691583 -87636764 - L1MA8 LINE L1 -185 7525 5247 2149 123 3 0 chr4 114691583 114691883 -87636464 + AluSp SINE Alu 1 301 -12 9155 154 32 34 chr4 114691883 114692144 -87636203 - L1MA8 LINE L1 -2463 5247 5001 1671 161 72 31 chr4 114692144 114692504 -87635843 + THE1C LTR MaLR 1 375 0 9155 154 32 34 chr4 114692504 114692558 -87635789 - L1MA8 LINE L1 -2709 5001 4948 2403 238 67 23 chr4 114692559 114693738 -87634609 - L1MA8 LINE L1 -4372 3193 2008 * 2810 219 226 19 chr4 114693736 114694754 -87633593 - L1MA8 LINE L1 -5797 1692 464 262 248 174 0 chr4 114694833 114694954 -87633393 + Charlie2 DNA MER1_type 170 311 -2471 2414 134 37 3 chr4 114695696 114696077 -87632270 + MER57A LTR ERV1 1 394 -9 24 53 0 0 chr4 114696080 114696118 -87632229 + AT_rich Low_complexity Low_complexity 1 38 0 4384 126 49 23 chr4 114696185 114696893 -87631454 + LTR8A LTR ERV1 1 727 0 3035 139 141 32 chr4 114697395 114697949 -87630398 - LTR18B LTR ERVL 0 614 1 25 0 0 0 chr4 114698725 114698750 -87629597 + AT_rich Low_complexity Low_complexity 1 25 0 302 233 27 0 chr4 114698856 114698929 -87629418 + MER5A DNA MER1_type 32 106 -83 2237 153 22 68 chr4 114699386 114699506 -87628841 + L1MB7 LINE L1 5658 5782 -402 2182 114 0 0 chr4 114699506 114699805 -87628542 + AluSc SINE Alu 1 299 -10 2237 153 22 68 chr4 114699805 114699880 -87628467 + L1MB7 LINE L1 5782 5859 -325 1514 100 5 15 chr4 114699880 114700080 -87628267 - AluSg/x SINE Alu -31 279 82 2237 153 22 68 chr4 114700080 114700386 -87627961 + L1MB7 LINE L1 5859 6137 -47 2308 118 0 0 chr4 114700391 114700696 -87627651 + AluSc SINE Alu 1 305 -4 1649 151 95 51 chr4 114700906 114701297 -87627050 + MER31B LTR ERV1 2 409 -57 451 181 26 69 chr4 114701586 114701702 -87626645 - MER20 DNA MER1_type -108 111 1 752 202 106 5 chr4 114701983 114702171 -87626176 + MER3 DNA MER1_type 3 209 0 383 242 62 43 chr4 114702532 114702693 -87625654 + L2 LINE L2 3150 3313 0 570 241 20 103 chr4 114702710 114702913 -87625434 - MIR SINE MIR -27 235 50 548 246 85 19 chr4 114703934 114704194 -87624153 + MER33 DNA MER1_type 26 302 -22 289 226 0 0 chr4 114704263 114704325 -87624022 + MIR SINE MIR 96 157 -105 755 234 82 0 chr4 114704349 114704520 -87623827 - MIR SINE MIR -67 195 11 233 356 11 0 chr4 114704525 114704615 -87623732 + MIR SINE MIR 152 242 -20 223 191 206 0 chr4 114704878 114704941 -87623406 - MIR SINE MIR -21 241 166 531 247 133 12 chr4 114705790 114705956 -87622391 - MIR SINE MIR -70 192 7 2459 68 0 0 chr4 114707767 114708063 -87620284 - AluSg SINE Alu -14 296 1 224 326 11 84 chr4 114708711 114708901 -87619446 + L2 LINE L2 2564 2739 -575 368 196 109 11 chr4 114708984 114709076 -87619271 + MLT1E3 LTR MaLR 400 500 -124 353 202 20 50 chr4 114709078 114709177 -87619170 - L1MC5 LINE L1 -1223 6738 6643 1439 167 63 93 chr4 114709229 114709702 -87618645 + L1MC5 LINE L1 6758 7216 -745 3033 99 49 7 chr4 114709702 114710128 -87618219 - MLT2A1 LTR ERVL 0 444 1 29002 66 7 10 chr4 114710128 114713768 -87614579 - HERVL-A1 LTR ERVL 0 5654 2028 750 163 233 0 chr4 114713768 114713940 -87614407 - LTR66 LTR ERVL 0 610 399 229 185 0 31 chr4 114713944 114714009 -87614338 - L1MC4 LINE L1 -1339 6703 6641 2867 136 30 0 chr4 114714020 114714446 -87613901 - LTR66 LTR ERVL -171 439 1 8751 67 3 2 chr4 114714446 114715525 -87612822 - HERVL LTR ERVL -3622 2032 953 690 70 0 0 chr4 114715526 114715612 -87612735 + AluY SINE Alu 2 87 -223 3925 184 25 61 chr4 114715612 114716617 -87611730 - LTR5 LTR ERVK 0 969 1 1521 80 25 10 chr4 114716617 114716846 -87611501 + AluY SINE Alu 82 314 0 7530 77 3 15 chr4 114716846 114717821 -87610526 - HERVL-A1 LTR ERVL -4691 963 1 2797 84 27 119 chr4 114717821 114718310 -87610037 - MLT2A1 LTR ERVL 0 444 1 725 237 111 51 chr4 114718310 114718781 -87609566 + L1MC5 LINE L1 7212 7716 -245 2019 140 102 9 chr4 114718781 114719124 -87609223 - THE1C LTR MaLR 0 375 1 725 237 111 51 chr4 114719124 114719158 -87609189 + L1MC5 LINE L1 7716 7747 -214 704 234 122 93 chr4 114719199 114719674 -87608673 + HAL1 LINE L1 1077 1565 -942 922 266 81 78 chr4 114719739 114720404 -87607943 + PABL_B LTR ERV1 1 667 0 25480 183 29 8 chr4 114720406 114724792 -87603555 + PABL_B-int LTR ERV1 1 4482 -2640 1961 140 68 0 chr4 114724788 114725096 -87603251 + PABL_B-int LTR ERV1 5560 5888 -1234 * 15359 189 12 13 chr4 114725100 114727738 -87600609 + PABL_B-int LTR ERV1 4487 7122 0 881 255 48 51 chr4 114727860 114728452 -87599895 + PABL_B LTR ERV1 72 667 0 731 282 33 11 chr4 114728467 114728740 -87599607 + HAL1 LINE L1 1736 2014 -493 390 257 38 19 chr4 114728756 114728861 -87599486 + L1MC5 LINE L1 7047 7153 -808 1285 89 0 0 chr4 114728866 114729074 -87599273 - AluY SINE Alu 0 333 126 240 211 29 67 chr4 114729074 114729178 -87599169 + L1MC4 LINE L1 7144 7243 -799 * 286 316 17 8 chr4 114729174 114729291 -87599056 + L1MC4a LINE L1 7229 7346 -462 1452 281 54 31 chr4 114729317 114729472 -87598875 - LTR16C LTR ERVL 0 491 341 1756 150 14 27 chr4 114729472 114729766 -87598581 + AluJb SINE Alu 1 290 -22 1452 281 54 31 chr4 114729766 114730090 -87598257 - LTR16C LTR ERVL -150 341 1 621 276 28 28 chr4 114730286 114730500 -87597847 + HAL1 LINE L1 2078 2291 -216 439 126 11 58 chr4 114730500 114730587 -87597760 + MLT1A1 LTR MaLR 3 85 -280 27 0 0 0 chr4 114730873 114730900 -87597447 + AT_rich Low_complexity Low_complexity 1 27 0 349 305 17 42 chr4 114730968 114731086 -87597261 + MIR3 SINE MIR 77 191 -17 2877 197 42 8 chr4 114731238 114731837 -87596510 - L1ME1 LINE L1 -257 5978 5360 2510 243 126 24 chr4 114731848 114732786 -87595561 - L1ME1 LINE L1 -5326 1070 37 233 156 22 0 chr4 114732939 114732984 -87595363 - L1MC5 LINE L1 -431 7530 7485 7394 178 45 35 chr4 114732993 114734526 -87593821 + L1MC3 LINE L1 6238 7785 0 207 167 48 0 chr4 114735627 114735669 -87592678 + CT-rich Low_complexity Low_complexity 5 48 0 224 159 23 0 chr4 114736152 114736196 -87592151 - L2 LINE L2 -5 3308 3264 389 259 108 14 chr4 114736196 114736335 -87592012 + MER103 DNA DNA 1 152 -14 653 227 109 107 chr4 114736462 114737006 -87591341 + MLT1H1 LTR MaLR 5 547 -8 26 50 0 0 chr4 114737206 114737246 -87591101 + AT_rich Low_complexity Low_complexity 1 40 0 373 130 0 26 chr4 114737556 114737633 -87590714 + (TCC)n Simple_repeat Simple_repeat 2 76 0 761 301 6 25 chr4 114738808 114739041 -87589306 - MLT2B3 LTR ERVL -108 446 223 1406 172 78 4 chr4 114739044 114739300 -87589047 + AluJo SINE Alu 1 275 -37 1355 166 9 9 chr4 114739335 114739564 -87588783 - MLT2B1 LTR ERVL -291 229 1 718 310 49 88 chr4 114739894 114740484 -87587863 - MLT1K LTR MaLR -3 585 19 1338 296 68 18 chr4 114740750 114741253 -87587094 + LTR67 LTR ERVL 30 557 0 2288 157 60 3 chr4 114741258 114741627 -87586720 - MLT1B LTR MaLR 0 390 1 545 228 178 50 chr4 114741975 114742151 -87586196 + MIR SINE MIR 16 168 -94 2476 109 117 33 chr4 114742151 114742546 -87585801 + MSTA LTR MaLR 1 428 0 9597 178 30 4 chr4 114742546 114744155 -87584192 + MSTA-int LTR MaLR 1 1651 0 2183 146 128 13 chr4 114744155 114744539 -87583808 + MSTA LTR MaLR 1 428 0 545 228 178 50 chr4 114744539 114744579 -87583768 + MIR SINE MIR 167 262 0 22 0 0 0 chr4 114745389 114745411 -87582936 + AT_rich Low_complexity Low_complexity 1 22 0 27 73 0 0 chr4 114745611 114745666 -87582681 + AT_rich Low_complexity Low_complexity 1 55 0 462 230 146 36 chr4 114745907 114746072 -87582275 + MIR SINE MIR 43 225 -37 2208 94 17 3 chr4 114746072 114746360 -87581987 + AluSc SINE Alu 1 292 -17 275 173 0 0 chr4 114746367 114746419 -87581928 + Charlie5 DNA MER1_type 2473 2524 -88 23 54 0 0 chr4 114746482 114746519 -87581828 + AT_rich Low_complexity Low_complexity 1 37 0 484 278 89 34 chr4 114746779 114747106 -87581241 + L1M4 LINE L1 2210 2554 -3592 397 247 127 20 chr4 114747110 114747260 -87581087 - L2 LINE L2 0 3313 3148 655 243 125 64 chr4 114747741 114748446 -87579901 + L1M4 LINE L1 4146 4893 -1253 3001 208 66 62 chr4 114748482 114749443 -87578904 + L1MC4 LINE L1 7079 8042 0 1165 252 72 6 chr4 114749638 114749959 -87578388 - MER2 DNA MER2_type -2 342 1 234 282 0 51 chr4 114750075 114750153 -87578194 + MIR SINE MIR 79 149 -59 2211 121 0 3 chr4 114850693 114850990 -87477357 - AluSq SINE Alu -15 298 3 255 220 297 0 chr4 114851289 114851380 -87476967 + MIR SINE MIR 17 134 -128 250 341 138 0 chr4 114851527 114851665 -87476682 + MIR SINE MIR 91 247 -15 2247 89 3 7 chr4 114851963 114852254 -87476093 + AluSc SINE Alu 1 290 -19 924 228 17 22 chr4 114852495 114852727 -87475620 - MER115 DNA AcHobo -19 674 444 478 331 76 0 chr4 114852796 114852968 -87475379 - MER115 DNA AcHobo -381 312 128 407 306 191 0 chr4 114854992 114855201 -87473146 - MLT1I LTR MaLR 0 409 161 323 115 0 0 chr4 114855417 114855469 -87472878 - L1MB7 LINE L1 -18 6166 6115 1895 144 27 0 chr4 114855474 114855766 -87472581 + AluSx SINE Alu 3 302 -10 2262 96 0 10 chr4 114855964 114856257 -87472090 + AluSg SINE Alu 2 291 -19 1594 176 14 28 chr4 114856346 114856636 -87471711 + AluJb SINE Alu 5 290 -22 22 0 0 0 chr4 114858657 114858679 -87469668 + AT_rich Low_complexity Low_complexity 1 22 0 226 149 0 43 chr4 114858902 114858949 -87469398 + MLT1B LTR MaLR 331 375 -15 494 301 94 53 chr4 114858992 114859576 -87468771 - HAL1 LINE L1 -1798 709 102 1054 308 109 0 chr4 114859668 114860090 -87468257 + L2 LINE L2 1865 2332 -982 1020 295 89 39 chr4 114860089 114860752 -87467595 - L2 LINE L2 -1 3312 2611 * 849 264 186 14 chr4 114860736 114861096 -87467251 + L2 LINE L2 2317 2738 -576 * 710 218 24 0 chr4 114861107 114861272 -87467075 + L1MB5 LINE L1 5998 6166 -8 452 189 0 0 chr4 114861321 114861411 -87466936 - MLT1J LTR MaLR -6 505 416 243 0 0 0 chr4 114861567 114861594 -87466753 + (A)n Simple_repeat Simple_repeat 1 27 0 282 255 181 67 chr4 114861811 114862032 -87466315 - HAL1 LINE L1 -21 2486 2291 315 0 0 0 chr4 114862032 114862067 -87466280 + (CA)n Simple_repeat Simple_repeat 2 36 0 282 255 181 67 chr4 114862067 114862426 -87465921 - HAL1 LINE L1 -216 2291 1840 269 253 48 0 chr4 114862461 114862544 -87465803 - MLT1J1 LTR MaLR -2 444 358 492 201 93 25 chr4 114862545 114862820 -87465527 + MLT1A2 LTR MaLR 1 374 0 678 242 63 50 chr4 114862827 114863129 -87465218 - MLT1J1 LTR MaLR -99 347 42 347 314 175 3 chr4 114863312 114863621 -87464726 - HAL1 LINE L1 -944 1563 1202 21 0 0 0 chr4 114866962 114866983 -87461364 + AT_rich Low_complexity Low_complexity 1 21 0 302 285 228 31 chr4 114867188 114867539 -87460808 + L1ME4a LINE L1 5636 6055 -66 1909 86 0 34 chr4 114867681 114867948 -87460399 + AluY SINE Alu 39 296 -15 205 284 0 14 chr4 114868240 114868314 -87460033 + A-rich Low_complexity Low_complexity 4 76 0 1419 123 27 0 chr4 114869679 114869898 -87458449 - MSTA LTR MaLR 0 428 204 2336 127 91 13 chr4 114871079 114871474 -87456873 + MSTB LTR MaLR 1 426 0 25 0 0 0 chr4 114871658 114871683 -87456664 + AT_rich Low_complexity Low_complexity 1 25 0 1552 174 57 21 chr4 114871683 114871964 -87456383 + AluJo SINE Alu 1 291 -21 231 93 0 0 chr4 114871966 114872009 -87456338 + L1MA3 LINE L1 6263 6305 0 300 253 10 30 chr4 114872228 114872327 -87456020 + MER106B DNA MER1_type 963 1059 0 399 326 136 5 chr4 114872469 114872690 -87455657 + L2 LINE L2 3014 3263 -50 2302 87 3 7 chr4 114873011 114873309 -87455038 - AluSc SINE Alu -12 297 1 360 64 0 0 chr4 114874328 114874375 -87453972 + (TC)n Simple_repeat Simple_repeat 2 48 0 669 259 29 18 chr4 114874549 114874719 -87453628 - MER5B DNA MER1_type 0 178 7 2247 113 3 6 chr4 114874832 114875143 -87453204 - AluSx SINE Alu -2 310 1 351 352 75 14 chr4 114875269 114875482 -87452865 + L2 LINE L2 1186 1411 -1903 184 309 93 0 chr4 114875950 114876047 -87452300 + L2 LINE L2 1865 1970 -1344 484 209 0 0 chr4 114876323 114876409 -87451938 + AluS SINE Alu 1 86 -226 629 99 0 0 chr4 114876509 114876600 -87451747 - MSTA LTR MaLR -337 91 1 210 276 20 122 chr4 114876811 114876909 -87451438 + MIR SINE MIR 38 125 -83 260 268 56 0 chr4 114876929 114877000 -87451347 + L2 LINE L2 3233 3307 -6 964 166 25 25 chr4 114877060 114877259 -87451088 - MER3 DNA MER1_type -5 204 6 285 176 15 29 chr4 114877440 114877508 -87450839 + L1MC2 LINE L1 4892 4958 -1188 4936 168 61 6 chr4 114877514 114878753 -87449594 + L1MC2 LINE L1 5037 6344 0 7674 25 0 3 chr4 114878895 114880414 -87447933 + L1PA3 LINE L1 4640 6155 0 239 176 0 64 chr4 114881365 114881427 -87446920 - MLT1J2 LTR MaLR -114 332 280 1595 297 78 4 chr4 114881558 114882110 -87446237 + L2 LINE L2 2082 2674 -640 345 284 136 13 chr4 114882087 114882242 -87446105 + L2 LINE L2 3097 3270 -43 * 6331 169 183 31 chr4 114882242 114883766 -87444581 - MER52A LTR ERV1 0 1755 1 190 159 68 0 chr4 114883766 114883810 -87444537 + L2 LINE L2 3267 3313 0 283 311 0 11 chr4 114883949 114884039 -87444308 - MLT1J LTR MaLR -312 199 111 246 32 0 0 chr4 114885060 114885091 -87443256 + (CA)n Simple_repeat Simple_repeat 2 32 0 420 263 116 68 chr4 114885112 114885405 -87442942 + L2 LINE L2 3006 3312 -1 312 236 32 114 chr4 114886968 114887091 -87441256 - L2 LINE L2 0 3313 3201 336 345 45 0 chr4 114887130 114887240 -87441107 + L2 LINE L2 3158 3272 0 212 307 175 18 chr4 114888223 114888337 -87440010 - L2 LINE L2 0 3272 3141 208 227 23 0 chr4 114888455 114888499 -87439848 + MIR SINE MIR 4 48 -214 194 73 132 176 chr4 114888514 114888582 -87439765 + MIR SINE MIR 154 218 -44 1423 176 57 81 chr4 114889287 114889708 -87438639 + MLT1C LTR MaLR 1 411 -56 658 261 76 11 chr4 114890000 114890184 -87438163 - MIR SINE MIR -55 207 12 377 135 14 14 chr4 114890247 114890321 -87438026 + LTR49 LTR ERV1 450 523 -72 222 194 0 0 chr4 114891080 114891116 -87437231 + (TG)n Simple_repeat Simple_repeat 2 37 0 259 316 0 10 chr4 114892427 114892525 -87435822 + L2 LINE L2 1739 1835 -1479 492 224 30 30 chr4 114893313 114893447 -87434900 + MER94 DNA DNA 1 134 0 21 0 0 0 chr4 114893553 114893574 -87434773 + AT_rich Low_complexity Low_complexity 1 21 0 407 246 33 0 chr4 114894767 114894889 -87433458 + L1MD2 LINE L1 6214 6339 -20 222 37 0 0 chr4 114894908 114894935 -87433412 + (GAA)n Simple_repeat Simple_repeat 2 28 0 1089 284 188 45 chr4 114895023 114896263 -87432084 + L2 LINE L2 1864 3272 0 295 260 0 0 chr4 114897122 114897199 -87431148 + MER33 DNA MER1_type 1 77 -247 206 333 43 78 chr4 114897520 114897775 -87430572 + L2 LINE L2 2807 3052 -220 2262 96 0 3 chr4 114898293 114898586 -87429761 - AluSx SINE Alu -19 293 2 667 130 30 0 chr4 114899111 114899211 -87429136 + U6 snRNA snRNA 1 103 -4 750 238 85 27 chr4 114899254 114899477 -87428870 - MIR SINE MIR -4 258 23 213 354 8 85 chr4 114900027 114900157 -87428190 + MIR SINE MIR 20 139 -69 2335 105 0 9 chr4 114900424 114900739 -87427608 - AluSq SINE Alu -1 312 1 190 309 191 12 chr4 114900921 114901005 -87427342 + MIR SINE MIR 33 131 -77 442 228 114 8 chr4 114902546 114902669 -87425678 + L2 LINE L2 3176 3311 -2 1098 158 0 12 chr4 114902674 114902845 -87425502 + FRAM SINE Alu 1 166 -10 21 82 0 0 chr4 114902964 114903013 -87425334 + AT_rich Low_complexity Low_complexity 1 49 0 290 302 19 0 chr4 114903103 114903209 -87425138 - L1ME LINE L1 -482 5639 5532 44 35 0 0 chr4 114903697 114903755 -87424592 + AT_rich Low_complexity Low_complexity 1 58 0 3365 108 12 8 chr4 114905327 114905829 -87422518 + L1PA13 LINE L1 5660 6163 0 1191 196 120 33 chr4 114907171 114907447 -87420900 + AluJo SINE Alu 1 300 -12 2399 93 0 10 chr4 114908056 114908368 -87419979 - AluSc SINE Alu 0 309 1 207 310 0 14 chr4 114908758 114908829 -87419518 + (TTTA)n Simple_repeat Simple_repeat 1 70 0 2101 133 0 0 chr4 114909663 114909956 -87418391 - AluSx SINE Alu -17 295 3 635 240 58 0 chr4 114909970 114910178 -87418169 - L1MB7 LINE L1 -10 6174 5955 2071 149 13 0 chr4 114910770 114911078 -87417269 + AluSx SINE Alu 1 312 0 357 60 134 0 chr4 114911380 114911447 -87416900 + L1PA16 LINE L1 6082 6157 -9 272 247 124 10 chr4 114911548 114911645 -87416702 + MIR SINE MIR 4 111 -151 6557 102 23 8 chr4 114911661 114912772 -87415575 - L1MA3 LINE L1 0 6305 5179 189 214 214 12 chr4 114912783 114912867 -87415480 + MIR SINE MIR 137 237 -25 21 0 0 0 chr4 114913204 114913225 -87415122 + AT_rich Low_complexity Low_complexity 1 21 0 1762 145 0 4 chr4 114913512 114913767 -87414580 - AluSx SINE Alu -13 299 46 338 268 123 22 chr4 114913855 114913993 -87414354 - L1MB7 LINE L1 -339 5782 5631 4256 92 68 14 chr4 114913997 114914703 -87413644 + MER4A-int LTR ERV1 5853 6596 -2 592 77 22 11 chr4 114914708 114914799 -87413548 + MER4A LTR ERV1 1 92 -572 1862 133 0 23 chr4 114914848 114915148 -87413199 + MER4A LTR ERV1 372 664 0 189 333 0 0 chr4 114915192 114915246 -87413101 + L2 LINE L2 2389 2442 -872 232 299 29 7 chr4 114915445 114915582 -87412765 + L1MC4a LINE L1 3803 3942 -2204 231 309 130 16 chr4 114916539 114916662 -87411685 + L2 LINE L2 3133 3269 -3 234 290 318 11 chr4 114917225 114917401 -87410946 - MIR SINE MIR -32 230 1 275 286 0 0 chr4 114919529 114919592 -87408755 - L2 LINE L2 -74 3198 3136 947 238 72 57 chr4 114919731 114919776 -87408571 + L1MC4a LINE L1 5517 5560 -2248 2292 100 0 10 chr4 114919776 114920075 -87408272 + AluSx SINE Alu 1 296 -16 947 238 72 57 chr4 114920075 114920500 -87407847 + L1MC4a LINE L1 5560 5994 -1814 501 200 86 0 chr4 114920910 114921015 -87407332 + L2 LINE L2 3200 3313 0 291 321 180 22 chr4 114922332 114922749 -87405598 - L2 LINE L2 -3 3310 2828 198 0 0 0 chr4 114923047 114923069 -87405278 + (TA)n Simple_repeat Simple_repeat 2 23 0 2906 162 23 4 chr4 114923215 114923747 -87404600 + L1MB7 LINE L1 5633 6174 -10 367 333 119 0 chr4 114924576 114924744 -87403603 + MIR SINE MIR 1 188 -74 2840 185 48 8 chr4 114924747 114925417 -87402930 + L1 LINE L1 2479 3175 -2971 227 254 28 14 chr4 114925418 114925489 -87402858 + MIR SINE MIR 186 257 -5 224 312 156 40 chr4 114926692 114926942 -87401405 + L2 LINE L2 3033 3311 -2 884 156 69 69 chr4 114927215 114927491 -87400856 + MER33 DNA MER1_type 49 324 0 1677 151 42 14 chr4 114928363 114928648 -87399699 - AluJo SINE Alu -19 293 1 1453 176 82 45 chr4 114929264 114929674 -87398673 - MLT1D LTR MaLR 0 505 88 1114 136 257 0 chr4 114929703 114929986 -87398361 - MER46B DNA MER2_type -5 231 1 476 190 0 0 chr4 114929986 114930061 -87398286 - MLT1D LTR MaLR -429 76 2 1894 166 0 0 chr4 114930362 114930657 -87397690 - AluJb SINE Alu -17 295 1 490 289 235 0 chr4 114930835 114931039 -87397308 + MIR SINE MIR 6 257 -5 440 382 42 0 chr4 114931854 114932045 -87396302 - MIR SINE MIR -18 244 46 5577 106 30 7 chr4 114932626 114933515 -87394832 + L1PA15 LINE L1 5254 6163 -2 745 136 8 32 chr4 114933539 114933664 -87394683 + FLAM_C SINE Alu 11 132 -11 23 0 0 0 chr4 114934141 114934164 -87394183 + AT_rich Low_complexity Low_complexity 1 23 0 310 273 27 0 chr4 114934737 114934847 -87393500 + L1ME LINE L1 5656 5768 -353 532 271 40 17 chr4 114934989 114935166 -87393181 + MIR SINE MIR 79 259 -3 2137 114 0 0 chr4 114935393 114935699 -87392648 - AluSx SINE Alu 0 306 1 302 336 97 0 chr4 114936025 114936138 -87392209 + L2 LINE L2 3145 3268 -4 269 177 211 34 chr4 114936386 114936483 -87391864 - MIR SINE MIR -90 118 1 258 105 0 0 chr4 114937761 114937799 -87390548 + (A)n Simple_repeat Simple_repeat 1 38 0 183 42 0 0 chr4 114937800 114937824 -87390523 + (CA)n Simple_repeat Simple_repeat 1 24 0 348 300 113 101 chr4 114938103 114938580 -87389767 + L1M2 LINE L1 713 1195 -5654 4912 103 72 11 chr4 114939688 114940733 -87387614 + L1MA3 LINE L1 5109 6303 -2 2087 125 0 3 chr4 114940743 114941031 -87387316 - AluSg SINE Alu -23 287 1 2088 142 0 3 chr4 114942266 114942575 -87385772 + AluSx SINE Alu 3 310 -2 1232 299 94 26 chr4 114942662 114943320 -87385027 - L2 LINE L2 -799 2515 1813 1397 191 73 11 chr4 114943365 114943637 -87384710 + AluJb SINE Alu 3 291 -21 367 179 15 0 chr4 114943695 114943762 -87384585 + L1MB7 LINE L1 5997 6064 -120 252 309 82 78 chr4 114943771 114944009 -87384338 - L2 LINE L2 -1649 1665 1424 1603 167 29 0 chr4 114944009 114944285 -87384062 + AluJb SINE Alu 17 300 -12 252 309 82 78 chr4 114944285 114944328 -87384019 - L2 LINE L2 -1890 1424 1383 2129 241 72 12 chr4 114944328 114944913 -87383434 - MLT1E2 LTR MaLR -6 620 1 284 363 138 38 chr4 114944921 114945392 -87382955 - L2 LINE L2 -1930 1384 867 322 147 133 0 chr4 114945414 114945489 -87382858 - L1MA9 LINE L1 -22 6290 6206 686 139 36 7 chr4 114945505 114945642 -87382705 - L1MA9 LINE L1 -232 6080 5940 2050 133 13 0 chr4 114945643 114945945 -87382402 - AluSx SINE Alu -6 306 1 2637 95 45 15 chr4 114945974 114946419 -87381928 + LTR56 LTR ERV1 10 467 0 2224 106 3 3 chr4 114947435 114947736 -87380611 + AluSx SINE Alu 1 301 -11 1814 174 0 31 chr4 114949215 114949537 -87378810 - AluJb SINE Alu 0 312 1 1554 142 54 0 chr4 114949606 114949866 -87378481 + AluJo SINE Alu 28 301 -11 1061 270 68 44 chr4 114950215 114950718 -87377629 - LTR33 LTR ERVL -6 515 1 1439 108 0 0 chr4 114951050 114951235 -87377112 + AluSg SINE Alu 1 185 -125 916 117 7 22 chr4 114951338 114951475 -87376872 - FLAM_C SINE Alu 0 143 9 11633 120 92 54 chr4 114951476 114955363 -87372984 - LTR9-int LTR ERV1 -669 5856 2117 2139 141 0 0 chr4 114955363 114955661 -87372686 + AluSx SINE Alu 2 299 -13 11633 120 92 54 chr4 114955661 114956454 -87371893 - LTR9-int LTR ERV1 -4408 2117 1355 2131 202 57 62 chr4 114956454 114957069 -87371278 - LTR9 LTR ERV1 0 612 1 11633 120 92 54 chr4 114957069 114957425 -87370922 - LTR9-int LTR ERV1 -5170 1355 1 1881 134 3 22 chr4 114957428 114957780 -87370567 - MER4A LTR ERV1 0 664 261 598 95 21 11 chr4 114957780 114957875 -87370472 - MER4A LTR ERV1 -566 98 3 187 232 54 54 chr4 114958062 114958118 -87370229 - MIR SINE MIR -50 212 157 21 36 0 0 chr4 114964809 114964837 -87363510 + AT_rich Low_complexity Low_complexity 1 28 0 487 282 164 48 chr4 114964945 114965317 -87363030 - L2 LINE L2 -43 3270 2856 560 233 210 0 chr4 114965362 114965538 -87362809 - L2 LINE L2 -718 2596 2384 1713 117 4 47 chr4 114966869 114967126 -87361221 - AluSp SINE Alu -5 308 63 402 93 0 0 chr4 114967217 114967271 -87361076 + Alu SINE Alu 241 294 -18 249 182 0 0 chr4 114968471 114968526 -87359821 + (TG)n Simple_repeat Simple_repeat 2 56 0 22 0 0 0 chr4 114968526 114968548 -87359799 + AT_rich Low_complexity Low_complexity 1 22 0 2005 138 34 23 chr4 114970061 114970415 -87357932 - THE1B LTR MaLR 0 364 7 693 284 33 0 chr4 114970444 114970655 -87357692 - MIR SINE MIR -27 235 18 21 0 0 0 chr4 114971154 114971175 -87357172 + AT_rich Low_complexity Low_complexity 1 21 0 2149 120 3 0 chr4 114972298 114972598 -87355749 + AluSq SINE Alu 1 301 -12 2290 109 0 22 chr4 114974068 114974379 -87353968 - AluSx SINE Alu -8 304 1 252 290 0 0 chr4 114974535 114974597 -87353750 + L2 LINE L2 2994 3055 -217 21 0 0 0 chr4 114975888 114975909 -87352438 + AT_rich Low_complexity Low_complexity 1 21 0 219 36 0 0 chr4 114976105 114976133 -87352214 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr4 114977735 114977757 -87350590 + AT_rich Low_complexity Low_complexity 1 22 0 1392 253 32 25 chr4 114981809 114982252 -87346095 + LTR40c LTR ERVL 2 447 -18 192 125 0 0 chr4 114982498 114982530 -87345817 + (TA)n Simple_repeat Simple_repeat 1 32 0 199 200 120 0 chr4 114982586 114982636 -87345711 - MIR SINE MIR -51 211 156 551 100 0 0 chr4 114983239 114983319 -87345028 + MADE1 DNA Mariner 1 80 0 6793 198 57 67 chr4 114983621 114984250 -87344097 + L1MB4 LINE L1 2849 3483 -2697 1673 197 7 10 chr4 114984250 114984550 -87343797 + AluJb SINE Alu 1 299 -13 6793 198 57 67 chr4 114984550 114985984 -87342363 + L1MB4 LINE L1 3483 4930 -1250 2023 142 7 0 chr4 114985984 114986280 -87342067 - AluSx SINE Alu -12 300 3 6793 198 57 67 chr4 114986280 114986633 -87341714 + L1MB4 LINE L1 4930 5285 -895 2049 144 3 37 chr4 114986633 114986981 -87341366 - MER1B DNA MER1_type 0 337 2 6793 198 57 67 chr4 114986981 114987933 -87340414 + L1MB4 LINE L1 5285 6180 0 1125 243 117 11 chr4 114988034 114988445 -87339902 + L2 LINE L2 2613 3098 -215 258 32 0 0 chr4 114988445 114988476 -87339871 + (CA)n Simple_repeat Simple_repeat 2 32 0 1125 243 117 11 chr4 114988476 114988550 -87339797 + L2 LINE L2 3098 3163 -150 882 165 0 0 chr4 114988557 114988690 -87339657 - AluJb SINE Alu -179 133 1 330 262 98 25 chr4 114988699 114988821 -87339526 + L2 LINE L2 3137 3267 -5 375 316 23 35 chr4 114988824 114988995 -87339352 + L1MC4a LINE L1 5784 5952 -1856 258 105 0 0 chr4 114989060 114989098 -87339249 + (TG)n Simple_repeat Simple_repeat 2 39 0 917 246 9 18 chr4 114989287 114989511 -87338836 + MER58A DNA MER1_type 1 222 -2 1524 140 31 0 chr4 114989546 114989623 -87338724 + AluSx SINE Alu 49 122 -190 198 0 0 0 chr4 114989623 114989645 -87338702 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1524 140 31 0 chr4 114989645 114989795 -87338552 + AluSx SINE Alu 122 283 -29 396 0 0 0 chr4 114989798 114989842 -87338505 + (TAA)n Simple_repeat Simple_repeat 2 45 0 2322 92 0 0 chr4 114989857 114990149 -87338198 + AluSg SINE Alu 1 292 -18 7116 45 9 2 chr4 114990149 114991240 -87337107 + L1PA6 LINE L1 5058 6154 0 300 211 75 48 chr4 114991349 114991496 -87336851 + L1ME4a LINE L1 5970 6120 -1 2212 110 0 35 chr4 114991679 114991996 -87336351 - AluSx SINE Alu -6 306 1 208 318 63 48 chr4 114992129 114992255 -87336092 - MIR3 SINE MIR -15 193 66 259 224 160 40 chr4 114992507 114992529 -87335818 - L1MA10 LINE L1 -1 6333 6312 1218 216 118 25 chr4 114992529 114992936 -87335411 - L1ME2 LINE L1 -11 6153 5709 239 213 88 52 chr4 114993321 114993457 -87334890 - MIR SINE MIR -13 249 109 2115 118 7 0 chr4 114994126 114994431 -87333916 + AluSx SINE Alu 1 307 -5 2035 128 45 21 chr4 114994465 114994841 -87333506 - MLT1B LTR MaLR 0 390 6 1988 232 14 24 chr4 114995484 114996149 -87332198 - L1 LINE L1 -2515 3631 2974 304 312 39 36 chr4 114996174 114996482 -87331865 - L1MEc LINE L1 -6073 323 15 2174 84 0 4 chr4 114996641 114996935 -87331412 + AluSx SINE Alu 11 303 0 184 304 33 11 chr4 114996992 114997084 -87331263 + MIR3 SINE MIR 83 176 -32 335 272 164 84 chr4 114999401 114999839 -87328508 + L1M2 LINE L1 492 964 -5885 263 330 111 57 chr4 115000870 115001149 -87327198 + L2 LINE L2 2976 3269 -3 785 113 25 38 chr4 115001238 115001460 -87326887 + L1MB3 LINE L1 5895 6182 -1 329 148 123 0 chr4 115001628 115001709 -87326638 - L1MB3 LINE L1 -307 5876 5786 1804 145 85 0 chr4 115001709 115002027 -87326320 + MER2 DNA MER2_type 1 345 0 1143 164 200 1 chr4 115002027 115002326 -87326021 - L1MB3 LINE L1 -396 5787 5435 359 286 121 100 chr4 115002417 115002879 -87325468 + L2 LINE L2 2494 2965 -349 310 263 12 12 chr4 115003041 115003121 -87325226 + L2 LINE L2 3185 3264 -49 21 57 0 0 chr4 115004140 115004175 -87324172 + AT_rich Low_complexity Low_complexity 1 35 0 2406 148 10 18 chr4 115004351 115004750 -87323597 + MSTD LTR MaLR 1 396 0 22 35 0 0 chr4 115004787 115004816 -87323531 + AT_rich Low_complexity Low_complexity 1 29 0 319 262 49 53 chr4 115005556 115005608 -87322739 - L1ME4a LINE L1 -119 6002 5951 2222 99 10 0 chr4 115005608 115005900 -87322447 - AluY SINE Alu -16 295 1 319 262 49 53 chr4 115005900 115006072 -87322275 - L1ME4a LINE L1 -170 5951 5779 2366 74 7 0 chr4 115006976 115007273 -87321074 + AluSx SINE Alu 1 299 -13 302 284 9 149 chr4 115007631 115007846 -87320501 + HAL1 LINE L1 163 347 -2160 1860 155 9 29 chr4 115008164 115008480 -87319867 - AluJb SINE Alu -1 311 2 377 190 0 124 chr4 115008482 115008603 -87319744 - MER58 DNA MER1_type -2166 254 149 723 162 81 0 chr4 115008663 115008811 -87319536 - MER58 DNA MER1_type -2259 161 2 389 245 158 27 chr4 115008869 115009053 -87319294 + L1ME LINE L1 2269 2476 -3908 209 268 0 0 chr4 115009306 115009377 -87318970 + (TA)n Simple_repeat Simple_repeat 2 72 0 247 176 0 0 chr4 115009382 115009433 -87318914 + L1ME LINE L1 2722 2772 -3610 286 202 53 44 chr4 115009734 115009848 -87318499 + L1ME LINE L1 3178 3292 -3090 347 320 144 16 chr4 115009896 115010146 -87318201 + L1ME LINE L1 3798 4079 -2303 526 265 76 67 chr4 115010620 115011080 -87317267 + L1ME LINE L1 4975 5438 -944 298 241 47 35 chr4 115011170 115011340 -87317007 + L1ME LINE L1 5605 5776 -622 853 246 143 0 chr4 115011466 115011759 -87316588 + HAL1 LINE L1 1613 1947 -560 262 253 157 0 chr4 115011813 115011896 -87316451 + L2 LINE L2 3193 3288 -25 372 308 19 9 chr4 115012199 115012306 -87316041 - L2 LINE L2 0 3272 3165 1800 179 0 10 chr4 115012389 115012701 -87315646 - AluJo SINE Alu -3 309 1 189 74 0 0 chr4 115012926 115012953 -87315394 + (TA)n Simple_repeat Simple_repeat 1 27 0 360 321 9 0 chr4 115013980 115014089 -87314258 - MIR3 SINE MIR -23 185 76 1689 217 68 39 chr4 115014163 115014652 -87313695 - MLT1D LTR MaLR -2 503 1 1079 267 168 27 chr4 115014670 115015145 -87313202 - MLT1F LTR MaLR 0 542 1 2114 125 20 0 chr4 115016081 115016376 -87311971 + AluSx SINE Alu 1 301 -11 2006 108 0 44 chr4 115016377 115016674 -87311673 + AluSx SINE Alu 1 284 -28 207 0 0 0 chr4 115016685 115016708 -87311639 + (CAT)n Simple_repeat Simple_repeat 2 24 0 270 312 118 59 chr4 115016708 115016878 -87311469 - L3 LINE CR1 -21 1556 1377 21 0 0 0 chr4 115017660 115017681 -87310666 + AT_rich Low_complexity Low_complexity 1 21 0 226 342 151 20 chr4 115018740 115018892 -87309455 + MIR3 SINE MIR 16 187 -21 487 245 113 13 chr4 115019579 115019738 -87308609 + MER20B DNA MER1_type 2 176 -607 211 341 182 0 chr4 115019854 115020030 -87308317 - MIR SINE MIR -6 256 49 327 299 154 49 chr4 115021910 115022235 -87306112 + L2 LINE L2 2954 3312 -1 991 138 92 0 chr4 115022537 115022689 -87305658 - AluJb SINE Alu -13 299 134 911 244 59 16 chr4 115022769 115023138 -87305209 + L1MA9 LINE L1 2785 3405 -4161 2116 117 0 3 chr4 115023138 115023420 -87304927 + AluSc SINE Alu 1 281 -28 387 0 0 0 chr4 115023420 115023463 -87304884 + (CA)n Simple_repeat Simple_repeat 2 44 0 3807 240 20 11 chr4 115023623 115024848 -87303499 + L1MA9 LINE L1 3455 4696 -2869 * 38169 68 11 3 chr4 115024838 115030934 -87297413 + L1PA5 LINE L1 5 6151 -3 5555 190 37 54 chr4 115030946 115031869 -87296478 + L1MA9 LINE L1 4694 5631 -2100 2242 116 0 0 chr4 115031869 115032171 -87296176 + AluSx SINE Alu 1 302 -10 5555 190 37 54 chr4 115032171 115032630 -87295717 + L1MA9 LINE L1 5631 6096 -1635 1227 153 30 68 chr4 115032630 115032865 -87295482 - AluJb SINE Alu -1 311 86 5555 190 37 54 chr4 115032865 115033970 -87294377 + L1MA9 LINE L1 6096 7193 -538 333 0 0 0 chr4 115033970 115034007 -87294340 + (CA)n Simple_repeat Simple_repeat 2 38 0 5555 190 37 54 chr4 115034007 115034532 -87293815 + L1MA9 LINE L1 7193 7725 -6 6497 71 12 0 chr4 115034886 115034941 -87293406 - L1PA13 LINE L1 -19 6144 6091 4340 105 11 7 chr4 115034941 115035549 -87292798 + LTR9 LTR ERV1 1 611 -1 6497 71 12 0 chr4 115035549 115036654 -87291693 - L1PA13 LINE L1 -72 6091 4979 2123 114 10 0 chr4 115036662 115036951 -87291396 - AluSx SINE Alu -20 292 1 242 284 153 23 chr4 115036961 115037176 -87291171 + L1MC/D LINE L1 5355 5597 -2211 1284 160 16 0 chr4 115037186 115037430 -87290917 + L1MD3 LINE L1 7730 7977 -18 218 200 0 0 chr4 115037560 115037600 -87290747 + A-rich Low_complexity Low_complexity 5 44 0 865 266 108 39 chr4 115037663 115037734 -87290613 - L2 LINE L2 -44 3269 3204 2087 133 0 7 chr4 115037734 115038036 -87290311 + AluSx SINE Alu 1 300 -12 865 266 108 39 chr4 115038036 115038496 -87289851 - L2 LINE L2 -109 3204 2708 1656 166 0 46 chr4 115038639 115038946 -87289401 - AluJb SINE Alu -9 303 11 2367 107 0 0 chr4 115039091 115039401 -87288946 + AluSx SINE Alu 1 310 -2 274 298 0 0 chr4 115039442 115039499 -87288848 - L3 LINE CR1 -5 1572 1516 207 69 0 0 chr4 115039571 115039600 -87288747 + (GA)n Simple_repeat Simple_repeat 2 30 0 230 235 39 0 chr4 115039733 115039784 -87288563 - L2 LINE L2 0 3313 3261 2225 103 3 20 chr4 115039866 115040166 -87288181 + AluSx SINE Alu 1 295 -17 203 220 60 0 chr4 115040446 115040496 -87287851 - L2 LINE L2 0 3313 3261 317 181 83 0 chr4 115040555 115040627 -87287720 + LTR8 LTR ERV1 1 78 -613 193 163 41 0 chr4 115040639 115040688 -87287659 + T-rich Low_complexity Low_complexity 2 52 0 274 141 31 16 chr4 115040693 115040757 -87287590 + MER87 LTR ERV1 85 149 -392 980 227 84 55 chr4 115040927 115041345 -87287002 + LTR8A LTR ERV1 289 718 -9 295 279 197 27 chr4 115041367 115041514 -87286833 + MIR3 SINE MIR 24 195 -13 393 322 9 9 chr4 115041704 115041819 -87286528 + MIR SINE MIR 17 131 -77 514 239 8 26 chr4 115041851 115041968 -87286379 + MER5B DNA MER1_type 4 118 -60 448 260 157 48 chr4 115042070 115042326 -87286021 + L1M3 LINE L1 4744 5027 -1119 1904 226 55 54 chr4 115042385 115042902 -87285445 + MLT1F LTR MaLR 1 521 -21 2543 91 21 16 chr4 115042902 115043275 -87285072 + THE1C LTR MaLR 1 375 0 1904 226 55 54 chr4 115043275 115043298 -87285049 + MLT1F LTR MaLR 521 542 0 962 184 63 89 chr4 115043340 115043655 -87284692 + L1MC4 LINE L1 6769 7075 -967 1108 169 77 4 chr4 115043862 115044122 -87284225 + L1M3 LINE L1 5337 5615 -565 636 196 28 0 chr4 115044148 115044255 -87284092 + FLAM_A SINE Alu 1 110 -32 693 169 26 0 chr4 115044261 115044415 -87283932 + L1ME1 LINE L1 5688 5845 -321 210 368 102 12 chr4 115044854 115045020 -87283327 + MIR SINE MIR 3 183 -79 939 269 27 16 chr4 115045022 115045278 -87283069 + MIR SINE MIR 2 260 -2 204 337 90 0 chr4 115047195 115047284 -87281063 - MIR3 SINE MIR -53 155 59 1941 158 0 10 chr4 115047322 115047626 -87280721 - AluJb SINE Alu -11 301 1 1800 133 77 15 chr4 115047699 115048038 -87280309 + MLT1A1 LTR MaLR 6 365 0 1039 182 66 111 chr4 115048679 115049058 -87279289 + MER57A LTR ERV1 42 403 0 634 265 49 41 chr4 115049061 115049306 -87279041 + MER57A-int LTR ERV1 3 249 -7288 22 0 0 0 chr4 115049348 115049370 -87278977 + AT_rich Low_complexity Low_complexity 1 22 0 2106 129 7 0 chr4 115049391 115049686 -87278661 + AluSx SINE Alu 16 312 0 884 204 111 51 chr4 115050106 115050639 -87277708 + MER57A-int LTR ERV1 1029 1447 -3489 408 206 62 0 chr4 115050639 115050736 -87277611 + MER34 LTR ERV1 133 235 -307 321 135 14 108 chr4 115050738 115050812 -87277535 + MER34 LTR ERV1 476 542 0 3717 202 66 80 chr4 115050874 115051046 -87277301 + MER57A-int LTR ERV1 1914 2087 -5224 2254 105 0 7 chr4 115051046 115051340 -87277007 + AluSg SINE Alu 1 292 -18 3717 202 66 80 chr4 115051340 115053223 -87275124 + MER57A-int LTR ERV1 2087 5821 -1490 937 295 51 27 chr4 115053381 115053945 -87274402 + MER57B-int LTR ERV1 2450 6195 -1342 639 230 11 11 chr4 115053996 115054174 -87274173 + MER57B-int LTR ERV1 4281 4458 -1873 1700 150 3 10 chr4 115054454 115054748 -87273599 + L1MA6 LINE L1 6009 6300 0 4746 61 8 0 chr4 115055881 115056467 -87271880 + LTR10C LTR ERV1 1 591 0 599 319 33 5 chr4 115056546 115056759 -87271588 + MER57B-int LTR ERV1 6794 7012 -525 252 220 0 0 chr4 115056801 115056851 -87271496 + MER57B-int LTR ERV1 7487 7536 -1 235 299 13 14 chr4 115056855 115057020 -87271327 + MER57B LTR ERV1 1 189 -245 461 194 87 0 chr4 115057058 115057161 -87271186 + MER57A LTR ERV1 292 403 0 2149 64 47 17 chr4 115058865 115059162 -87269185 - AluSq SINE Alu -7 306 1 21 0 0 0 chr4 115059277 115059298 -87269049 + AT_rich Low_complexity Low_complexity 1 21 0 330 295 87 33 chr4 115060708 115060891 -87267456 + MIR SINE MIR 51 243 -19 2134 122 3 7 chr4 115060954 115061257 -87267090 + AluSx SINE Alu 1 302 -10 430 296 127 41 chr4 115063312 115063532 -87264815 + MIR SINE MIR 18 256 -6 2100 147 0 0 chr4 115064735 115065035 -87263312 + AluSx SINE Alu 3 302 -10 196 301 27 0 chr4 115066174 115066247 -87262100 - L2 LINE L2 -5 3267 3193 2040 132 0 7 chr4 115066411 115066707 -87261640 - AluSg SINE Alu -16 294 1 191 406 59 0 chr4 115067823 115067924 -87260423 - L2 LINE L2 -50 3222 3116 820 134 0 35 chr4 115068315 115068457 -87259890 + L1MA4 LINE L1 6164 6300 0 182 269 19 0 chr4 115069224 115069276 -87259071 - L2 LINE L2 -225 3047 2995 627 100 20 40 chr4 115069687 115069787 -87258560 - Tigger7 DNA MER2_type 0 2487 2390 * 1335 198 56 8 chr4 115069786 115070038 -87258309 - Tigger7 DNA MER2_type -466 267 4 1092 177 117 125 chr4 115070078 115070293 -87258054 + MLT1A1 LTR MaLR 1 213 -152 3155 123 53 29 chr4 115070293 115070804 -87257543 + MER1A DNA MER1_type 1 523 -4 1092 177 117 125 chr4 115070804 115070956 -87257391 + MLT1A1 LTR MaLR 213 365 0 644 290 20 10 chr4 115071025 115071225 -87257122 - MIR SINE MIR 0 262 61 189 0 0 0 chr4 115071235 115071256 -87257091 + (T)n Simple_repeat Simple_repeat 1 21 0 1285 179 91 73 chr4 115071256 115071597 -87256750 - MLT1A1 LTR MaLR -17 348 2 351 250 179 0 chr4 115071975 115072087 -87256260 - MIR SINE MIR -31 231 100 203 290 32 21 chr4 115072215 115072308 -87256039 + MIR SINE MIR 117 210 -52 180 77 0 0 chr4 115073160 115073186 -87255161 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 396 284 16 8 chr4 115074500 115074627 -87253720 + MER5B DNA MER1_type 35 162 -16 1030 173 34 0 chr4 115074649 115074828 -87253519 - MER5A DNA MER1_type 0 189 5 462 192 185 20 chr4 115075010 115075161 -87253186 + MIR SINE MIR 71 246 -16 2381 67 0 3 chr4 115075217 115075527 -87252820 - AluY SINE Alu 0 310 2 707 143 50 8 chr4 115077418 115077537 -87250810 + MER3 DNA MER1_type 86 209 0 250 317 60 8 chr4 115077546 115077741 -87250606 + MIR SINE MIR 2 261 -1 216 97 0 0 chr4 115078088 115078119 -87250228 + (T)n Simple_repeat Simple_repeat 1 31 0 404 114 139 0 chr4 115078780 115078859 -87249488 - L1MB4 LINE L1 0 6180 6091 832 100 50 53 chr4 115078864 115078972 -87249375 - L1MB4 LINE L1 -245 5933 5829 2365 97 10 0 chr4 115078972 115079272 -87249075 - AluSc SINE Alu -6 303 1 832 100 50 53 chr4 115079272 115079340 -87249007 - L1MB4 LINE L1 -349 5829 5762 1466 104 31 42 chr4 115079368 115079664 -87248683 - THE1B LTR MaLR 0 364 1 1978 117 21 83 chr4 115079666 115080009 -87248338 - L1MB4 LINE L1 -416 5764 5446 1731 179 16 32 chr4 115080009 115080322 -87248025 - AluJo SINE Alu -4 308 1 1978 117 21 83 chr4 115080322 115080363 -87247984 - L1MB4 LINE L1 -734 5446 5404 4741 52 8 8 chr4 115080442 115081033 -87247314 - LTR10C LTR ERV1 0 591 1 2190 85 3 10 chr4 115081061 115081354 -87246993 - AluY SINE Alu -18 293 3 1077 181 83 24 chr4 115081732 115081986 -87246361 + MER33 DNA MER1_type 10 278 -46 282 263 9 0 chr4 115082761 115082779 -87245568 - L1MA4A LINE L1 0 6303 6286 5193 130 31 1 chr4 115082779 115083593 -87244754 - L1PB4 LINE L1 -1 6155 5318 307 276 166 37 chr4 115084789 115084952 -87243395 + MIR3 SINE MIR 16 199 -9 194 324 0 42 chr4 115084940 115085011 -87243336 + MIR SINE MIR 109 176 -86 * 284 224 0 0 chr4 115085023 115085081 -87243266 - L2 LINE L2 -5 3267 3210 380 242 69 108 chr4 115085456 115085682 -87242665 + Charlie8 DNA MER1_type 219 434 -1983 2287 89 20 3 chr4 115085682 115085974 -87242373 - AluSx SINE Alu -15 297 1 380 242 69 108 chr4 115085974 115086024 -87242323 + Charlie8 DNA MER1_type 434 484 -1933 25 31 0 0 chr4 115087455 115087487 -87240860 + AT_rich Low_complexity Low_complexity 1 32 0 1673 177 6 19 chr4 115088317 115088628 -87239719 + AluJb SINE Alu 5 311 -1 474 18 0 0 chr4 115090291 115090346 -87238001 + (TG)n Simple_repeat Simple_repeat 2 56 0 210 218 127 0 chr4 115090955 115091010 -87237337 - MIR SINE MIR -155 107 46 2314 108 0 3 chr4 115091114 115091410 -87236937 - AluSc SINE Alu -14 295 1 950 172 81 6 chr4 115093145 115093319 -87235028 - MER58A DNA MER1_type 0 224 38 1062 226 43 0 chr4 115093409 115093644 -87234703 + MIR SINE MIR 5 249 -13 1869 124 42 3 chr4 115093726 115094009 -87234338 + AluJb SINE Alu 2 295 -17 2279 105 3 0 chr4 115094152 115094457 -87233890 - AluSg SINE Alu -4 306 1 210 244 174 0 chr4 115095386 115095472 -87232875 - MIR SINE MIR -51 211 111 242 287 73 15 chr4 115099379 115099515 -87228832 - L2 LINE L2 -244 3069 2926 295 291 23 0 chr4 115099612 115099698 -87228649 + L2 LINE L2 2885 2972 -300 207 0 0 0 chr4 115099963 115099986 -87228361 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 1948 157 3 0 chr4 115100814 115101107 -87227240 + AluSx SINE Alu 1 294 -18 512 202 54 35 chr4 115101621 115101801 -87226546 - L1MD2 LINE L1 -33 7805 6072 259 276 189 0 chr4 115103531 115103658 -87224689 - MIR3 SINE MIR -13 195 45 2168 118 0 7 chr4 115104764 115105061 -87223286 - AluSg SINE Alu -15 295 1 2408 102 0 0 chr4 115105099 115105403 -87222944 - AluSg SINE Alu -6 304 1 2383 100 0 3 chr4 115105789 115106100 -87222247 + AluSg SINE Alu 1 310 0 353 260 199 15 chr4 115106361 115106557 -87221790 - MARNA DNA Mariner -337 249 18 374 319 98 15 chr4 115106725 115106929 -87221418 + MIR SINE MIR 18 238 -24 282 29 0 0 chr4 115107370 115107405 -87220942 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2072 107 0 0 chr4 115107407 115107669 -87220678 - AluSx SINE Alu -28 284 23 722 153 8 8 chr4 115107872 115107996 -87220351 + FLAM_A SINE Alu 1 124 -9 22 0 0 0 chr4 115108542 115108564 -87219783 + AT_rich Low_complexity Low_complexity 1 22 0 15285 23 8 0 chr4 115108564 115111107 -87217240 - L1PA3 LINE L1 -2 6153 3597 198 0 0 0 chr4 115111135 115111157 -87217190 + (CA)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chr4 115113110 115113133 -87215214 + AT_rich Low_complexity Low_complexity 1 23 0 848 211 77 28 chr4 115114784 115115031 -87213316 + L3b LINE CR1 1108 1366 -217 200 194 0 0 chr4 115115986 115116022 -87212325 + A-rich Low_complexity Low_complexity 4 39 0 226 270 18 99 chr4 115117054 115117165 -87211182 - MER112 DNA MER1_type -156 104 3 195 321 71 0 chr4 115120756 115120868 -87207479 - MIR3 SINE MIR -50 158 39 316 223 80 8 chr4 115121021 115121145 -87207202 - MIR SINE MIR -47 161 17 306 289 38 50 chr4 115122218 115122377 -87205970 + MIR SINE MIR 16 172 -90 180 300 33 0 chr4 115122515 115122575 -87205772 + MIR SINE MIR 62 123 -139 245 188 31 62 chr4 115124191 115124255 -87204092 + MLT1K LTR MaLR 188 249 -339 2171 119 0 6 chr4 115125974 115126286 -87202061 - AluSg SINE Alu 0 310 1 186 305 54 116 chr4 115126701 115126960 -87201387 + L2 LINE L2 3016 3258 -14 1439 200 11 18 chr4 115127457 115127732 -87200615 - AluJo SINE Alu -39 273 1 1401 201 64 11 chr4 115127814 115128097 -87200250 - AluJb SINE Alu -14 298 1 189 353 98 13 chr4 115128498 115128651 -87199696 - MIR3 SINE MIR -23 185 20 321 264 199 49 chr4 115128755 115129001 -87199346 + L2 LINE L2 3023 3305 -8 24 53 0 0 chr4 115129732 115129770 -87198577 + AT_rich Low_complexity Low_complexity 1 38 0 241 291 35 0 chr4 115130184 115130270 -87198077 - MIR SINE MIR -85 177 89 241 345 72 40 chr4 115130573 115130950 -87197397 - L2 LINE L2 -448 2866 2478 33 56 0 0 chr4 115131079 115131133 -87197214 + AT_rich Low_complexity Low_complexity 1 54 0 246 32 0 0 chr4 115132763 115132794 -87195553 + (CA)n Simple_repeat Simple_repeat 1 31 0 2050 117 3 21 chr4 115133303 115133594 -87194753 + AluSg SINE Alu 1 286 -24 21 0 0 0 chr4 115133952 115133973 -87194374 + AT_rich Low_complexity Low_complexity 1 21 0 1748 115 17 0 chr4 115134014 115134248 -87194099 - AluSx SINE Alu -21 291 54 2123 128 7 0 chr4 115135631 115135928 -87192419 - AluSq SINE Alu -14 299 1 2247 100 4 0 chr4 115136084 115136400 -87191947 + AluSp SINE Alu 1 317 0 403 261 37 30 chr4 115136441 115136575 -87191772 + MIR SINE MIR 20 154 -108 1637 199 51 11 chr4 115137053 115137404 -87190943 + MLT1A1 LTR MaLR 1 365 0 439 282 107 83 chr4 115137655 115137774 -87190573 + L1ME4a LINE L1 5487 5602 -519 2213 108 3 3 chr4 115137774 115138069 -87190278 + AluSx SINE Alu 1 295 -17 439 282 107 83 chr4 115138069 115138503 -87189844 + L1ME4a LINE L1 5602 6053 -68 286 314 25 13 chr4 115139918 115140077 -87188270 + (CA)n Simple_repeat Simple_repeat 1 161 0 234 0 0 0 chr4 115141006 115141032 -87187315 + (TTG)n Simple_repeat Simple_repeat 2 27 0 740 195 81 0 chr4 115141037 115141186 -87187161 - AluJo SINE Alu -30 282 122 2037 150 3 0 chr4 115141212 115141506 -87186841 + AluSx SINE Alu 5 299 -13 1682 79 0 0 chr4 115141936 115142150 -87186197 - AluY SINE Alu -19 292 79 28 71 0 0 chr4 115142525 115142581 -87185766 + AT_rich Low_complexity Low_complexity 1 56 0 185 123 0 140 chr4 115143871 115143928 -87184419 + L2 LINE L2 3224 3272 0 251 309 158 51 chr4 115144113 115144424 -87183923 + L2 LINE L2 2890 3233 -80 2129 108 0 30 chr4 115144485 115144780 -87183567 - AluSx SINE Alu -24 288 3 1734 149 4 22 chr4 115144879 115145154 -87183193 + AluSx SINE Alu 37 306 -6 734 174 0 0 chr4 115145164 115145285 -87183062 + AluJo SINE Alu 2 122 -190 681 173 12 60 chr4 115145313 115145914 -87182433 + SVA Other Other 442 601 -785 1038 164 0 33 chr4 115146032 115146215 -87182132 + AluJo SINE Alu 129 305 -7 186 133 0 0 chr4 115150560 115150590 -87177757 + (GA)n Simple_repeat Simple_repeat 2 31 0 259 32 0 0 chr4 115153222 115153253 -87175094 + (TTTTA)n Simple_repeat Simple_repeat 2 160 0 1909 116 26 0 chr4 115153253 115153521 -87174826 - AluSx SINE Alu -1 313 9 310 292 0 0 chr4 115153526 115153591 -87174756 - MIR3 SINE MIR -45 163 99 26 30 0 0 chr4 115154379 115154412 -87173935 + AT_rich Low_complexity Low_complexity 1 33 0 680 143 16 40 chr4 115154412 115154538 -87173809 - FLAM_A SINE Alu -10 123 1 280 271 0 0 chr4 115154548 115154607 -87173740 - L2 LINE L2 -2 3311 3253 264 266 355 0 chr4 115154666 115154835 -87173512 + MIR SINE MIR 33 261 -1 414 39 0 0 chr4 115154965 115155017 -87173330 + (CA)n Simple_repeat Simple_repeat 2 53 0 268 360 63 17 chr4 115155887 115156062 -87172285 + L2 LINE L2 2229 2411 -903 2043 124 14 14 chr4 115158170 115158460 -87169887 - AluSg SINE Alu -20 290 1 25 51 0 0 chr4 115158470 115158509 -87169838 + AT_rich Low_complexity Low_complexity 1 39 0 1077 163 80 4 chr4 115158748 115159012 -87169335 - L1MA4 LINE L1 -1 6299 6016 283 234 149 32 chr4 115160947 115161041 -87167306 - L2 LINE L2 -18 3295 3191 246 32 0 0 chr4 115161097 115161128 -87167219 + (A)n Simple_repeat Simple_repeat 1 31 0 211 204 0 23 chr4 115161525 115161569 -87166778 - MIR SINE MIR -150 58 16 254 323 83 0 chr4 115161790 115161886 -87166461 - MIR3 SINE MIR -95 113 10 220 303 0 0 chr4 115161904 115161970 -87166377 + A-rich Low_complexity Low_complexity 1 66 0 706 217 197 10 chr4 115162069 115162272 -87166075 - MIR SINE MIR -6 256 16 300 240 221 59 chr4 115163445 115163649 -87164698 - MIR SINE MIR -6 256 20 184 293 73 0 chr4 115163900 115163982 -87164365 - MIR SINE MIR -65 197 110 251 137 0 20 chr4 115164411 115164462 -87163885 + (GGA)n Simple_repeat Simple_repeat 3 52 0 5967 139 19 5 chr4 115164747 115165913 -87162434 + L1MA3 LINE L1 5124 6304 -1 1071 184 82 0 chr4 115167134 115167422 -87160925 + MER33 DNA MER1_type 1 302 -22 326 284 23 0 chr4 115167671 115167759 -87160588 + L1MC4 LINE L1 6614 6703 -1339 363 23 0 0 chr4 115167760 115167804 -87160543 + (TA)n Simple_repeat Simple_repeat 1 44 0 887 88 0 16 chr4 115167804 115167929 -87160418 - L1PA7 LINE L1 -16 6138 6016 502 258 103 21 chr4 115168805 115168999 -87159348 - MER63A DNA MER1_type 0 210 1 1845 114 4 11 chr4 115170001 115170265 -87158082 + AluSp SINE Alu 42 303 -10 213 318 19 28 chr4 115171069 115171176 -87157171 - MIR SINE MIR -50 212 107 1918 182 134 6 chr4 115172032 115172341 -87156006 + L1MB7 LINE L1 5569 5837 -347 221 0 35 0 chr4 115172341 115172370 -87155977 + (TATATG)n Simple_repeat Simple_repeat 1 30 0 1918 182 134 6 chr4 115172370 115172544 -87155803 + L1MB7 LINE L1 5837 6114 -70 215 84 105 0 chr4 115172606 115172701 -87155646 + (TA)n Simple_repeat Simple_repeat 2 106 0 2365 97 0 0 chr4 115173362 115173661 -87154686 - AluSx SINE Alu -13 299 1 218 320 10 21 chr4 115174075 115174172 -87154175 - MIR3 SINE MIR -14 194 99 210 364 23 11 chr4 115174786 115174874 -87153473 - MIR SINE MIR -100 108 20 23 0 0 0 chr4 115176697 115176720 -87151627 + AT_rich Low_complexity Low_complexity 1 23 0 934 274 20 8 chr4 115177549 115177797 -87150550 + MIR SINE MIR 2 252 -10 308 264 171 39 chr4 115178841 115178970 -87149377 + MIR SINE MIR 41 186 -76 1681 152 32 11 chr4 115179810 115180087 -87148260 + AluJb SINE Alu 1 283 -29 863 238 47 30 chr4 115180647 115180882 -87147465 + MIR SINE MIR 19 257 -5 440 255 51 30 chr4 115183915 115184021 -87144326 - MIR3 SINE MIR -15 193 78 447 19 0 0 chr4 115184021 115184073 -87144274 + (CA)n Simple_repeat Simple_repeat 2 53 0 440 255 51 30 chr4 115184073 115184100 -87144247 - MIR3 SINE MIR -130 78 53 1910 154 7 3 chr4 115184425 115184718 -87143629 + AluJb SINE Alu 1 294 -18 706 246 105 9 chr4 115184868 115185096 -87143251 + MIR SINE MIR 1 250 -12 345 236 56 0 chr4 115185989 115186078 -87142269 - MIR3 SINE MIR -17 191 98 529 306 100 35 chr4 115186134 115186363 -87141984 - MIR SINE MIR -4 258 15 4937 191 105 30 chr4 115187941 115188182 -87140165 - Charlie1a DNA MER1_type -1308 1453 1231 270 81 0 0 chr4 115188182 115188219 -87140128 + (TG)n Simple_repeat Simple_repeat 2 38 0 4937 191 105 30 chr4 115188219 115188233 -87140114 - Charlie1a DNA MER1_type -1530 1231 1219 1801 163 4 0 chr4 115188233 115188509 -87139838 - AluJo SINE Alu -35 277 1 4937 191 105 30 chr4 115188509 115189600 -87138747 - Charlie1a DNA MER1_type -1542 1219 5 276 232 56 16 chr4 115189962 115190087 -87138260 - L1MEd LINE L1 -3097 3032 2903 386 275 84 72 chr4 115190238 115190489 -87137858 - L1MEd LINE L1 -3467 2662 2409 319 206 176 10 chr4 115190554 115190656 -87137691 - L1MEd LINE L1 -5044 1075 957 1948 140 3 29 chr4 115190656 115190963 -87137384 - AluJo SINE Alu -13 299 1 510 234 135 0 chr4 115190983 115191124 -87137223 - MER3 DNA MER1_type 0 209 50 489 316 67 44 chr4 115191264 115191606 -87136741 - L1MEd LINE L1 -5447 672 323 234 0 0 0 chr4 115191611 115191637 -87136710 + (T)n Simple_repeat Simple_repeat 1 26 0 252 219 31 0 chr4 115191817 115191881 -87136466 + (TATG)n Simple_repeat Simple_repeat 1 66 0 1598 151 37 33 chr4 115192036 115192335 -87136012 + AluJo SINE Alu 1 300 -12 380 226 137 70 chr4 115192416 115192552 -87135795 - MER46C DNA MER2_type -21 317 191 2309 103 0 0 chr4 115192552 115192843 -87135504 - AluSg SINE Alu -17 293 3 380 226 137 70 chr4 115192843 115192976 -87135371 - MER46C DNA MER2_type -147 191 30 2006 138 3 0 chr4 115193324 115193640 -87134707 - AluSx SINE Alu 0 317 1 22 35 0 0 chr4 115194657 115194686 -87133661 + AT_rich Low_complexity Low_complexity 1 29 0 2023 143 0 7 chr4 115194698 115195006 -87133341 + AluSx SINE Alu 1 306 -6 240 256 244 0 chr4 115195155 115195233 -87133114 - MER5A DNA MER1_type -83 106 10 29 28 0 0 chr4 115195395 115195431 -87132916 + AT_rich Low_complexity Low_complexity 1 36 0 901 98 148 44 chr4 115195496 115195601 -87132746 + MER30 DNA MER1_type 1 94 -136 324 0 0 0 chr4 115195601 115195637 -87132710 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 901 98 148 44 chr4 115195637 115195714 -87132633 + MER30 DNA MER1_type 94 202 -28 703 238 72 0 chr4 115196346 115196527 -87131820 + MER20 DNA MER1_type 7 200 -19 623 248 45 6 chr4 115196537 115196694 -87131653 + MER5A DNA MER1_type 1 163 -26 207 0 0 0 chr4 115196975 115196998 -87131349 + (TG)n Simple_repeat Simple_repeat 2 24 0 192 349 110 71 chr4 115197022 115197277 -87131070 - L2 LINE L2 -84 3188 2924 1998 131 3 36 chr4 115200540 115200846 -87127501 + AluSx SINE Alu 1 296 -16 628 194 57 0 chr4 115201116 115201240 -87127107 - FLAM_A SINE Alu -2 131 1 546 156 0 40 chr4 115201263 115201507 -87126840 + AluJ SINE Alu 9 299 -13 621 162 40 147 chr4 115202652 115202762 -87125585 - MER5A DNA MER1_type -12 177 57 1762 161 0 10 chr4 115202762 115203054 -87125293 - AluJb SINE Alu -1 311 23 621 162 40 147 chr4 115203054 115203077 -87125270 - MER5A DNA MER1_type -132 57 33 1994 97 0 0 chr4 115203077 115203335 -87125012 - AluSg SINE Alu -10 300 43 621 162 40 147 chr4 115203335 115203398 -87124949 - MER5A DNA MER1_type -156 33 1 532 168 140 37 chr4 115203666 115203773 -87124574 - FLAM_A SINE Alu -19 123 6 471 294 102 77 chr4 115203805 115204025 -87124322 - L3 LINE CR1 -18 1559 1327 1061 260 79 16 chr4 115204025 115204340 -87124007 - MER46C DNA MER2_type 0 338 4 471 294 102 77 chr4 115204340 115204442 -87123905 - L3 LINE CR1 -250 1327 1229 524 270 74 6 chr4 115204734 115204941 -87123406 - MIR SINE MIR -1 261 34 459 321 149 20 chr4 115204996 115205554 -87122793 + L3 LINE CR1 629 1258 -319 1214 90 0 6 chr4 115207326 115207493 -87120854 + L1PB1 LINE L1 5948 6113 -38 362 221 228 0 chr4 115208443 115208588 -87119759 - MIR SINE MIR -80 182 5 231 114 45 68 chr4 115210614 115210658 -87117689 + L1M2a LINE L1 744 786 -6382 21 0 0 0 chr4 115212633 115212654 -87115693 + AT_rich Low_complexity Low_complexity 1 21 0 494 315 109 15 chr4 115214249 115214516 -87113831 - L3b LINE CR1 -89 1494 1203 222 37 0 0 chr4 115214974 115215001 -87113346 + (A)n Simple_repeat Simple_repeat 1 27 0 549 224 77 39 chr4 115215168 115215324 -87113023 + Charlie7 DNA MER1_type 32 193 -2419 502 257 32 27 chr4 115215334 115215521 -87112826 + Charlie7 DNA MER1_type 422 609 -2003 238 214 167 0 chr4 115215537 115215621 -87112726 + Charlie7 DNA MER1_type 2504 2601 -11 1733 172 5 59 chr4 115215756 115216128 -87112219 + L1MB8 LINE L1 5815 6166 -12 842 220 65 47 chr4 115216692 115216924 -87111423 - MER46A DNA MER2_type 0 236 1 512 242 40 0 chr4 115217132 115217231 -87111116 + AluJb SINE Alu 174 276 -36 335 300 91 0 chr4 115217922 115218032 -87110315 - MIR SINE MIR -131 131 12 25 0 0 0 chr4 115218379 115218404 -87109943 + AT_rich Low_complexity Low_complexity 1 25 0 409 282 53 59 chr4 115218639 115218809 -87109538 + L2 LINE L2 3102 3270 -2 2655 27 0 0 chr4 115219287 115219586 -87108761 + AluY SINE Alu 1 299 -12 300 294 78 39 chr4 115219696 115219849 -87108498 + L1MC4 LINE L1 6614 6772 -1270 480 241 24 77 chr4 115220774 115220981 -87107366 + MIR SINE MIR 41 236 -26 541 250 64 29 chr4 115221708 115221848 -87106499 + MIR SINE MIR 100 244 -18 478 320 79 83 chr4 115222027 115222470 -87105877 - L2 LINE L2 -5 3267 2827 321 350 8 8 chr4 115222621 115222738 -87105609 + MIR3 SINE MIR 10 126 -82 270 313 50 31 chr4 115222761 115222921 -87105426 - MER5A DNA MER1_type 0 189 27 292 179 198 47 chr4 115222948 115223054 -87105293 - MIR3 SINE MIR -72 136 15 639 261 126 57 chr4 115223735 115224210 -87104137 + L1ME4a LINE L1 5598 6105 -16 187 294 64 55 chr4 115224438 115224547 -87103800 + MIR SINE MIR 126 235 -27 207 0 0 0 chr4 115224552 115224575 -87103772 + (A)n Simple_repeat Simple_repeat 1 23 0 202 287 10 79 chr4 115225843 115225944 -87102403 - MIR3 SINE MIR -105 103 10 186 189 38 57 chr4 115226643 115226696 -87101651 - L2 LINE L2 -1 3271 3220 1179 191 82 0 chr4 115226859 115227116 -87101231 + L1PB4 LINE L1 5879 6156 0 189 0 0 0 chr4 115227257 115227278 -87101069 + (TC)n Simple_repeat Simple_repeat 2 22 0 408 20 0 0 chr4 115227288 115227337 -87101010 + (CA)n Simple_repeat Simple_repeat 2 50 0 1519 93 42 5 chr4 115227341 115227555 -87100792 - AluSx SINE Alu -43 269 48 324 233 80 98 chr4 115237000 115237163 -87091184 + L1M2 LINE L1 708 867 -5982 396 0 0 0 chr4 115237463 115237507 -87090840 + (CA)n Simple_repeat Simple_repeat 2 45 0 26 30 0 0 chr4 115238010 115238043 -87090304 + GC_rich Low_complexity Low_complexity 1 33 0 255 214 18 0 chr4 115238590 115238646 -87089701 + GA-rich Low_complexity Low_complexity 2 58 0 23 0 0 0 chr4 115243457 115243480 -87084867 + GC_rich Low_complexity Low_complexity 1 23 0 370 192 23 77 chr4 115244336 115244466 -87083881 + MIR SINE MIR 36 158 -104 2279 116 0 0 chr4 115245483 115245793 -87082554 - AluSx SINE Alu -2 310 1 1470 152 91 0 chr4 115247329 115247572 -87080775 - AluSx SINE Alu -15 297 33 209 262 49 0 chr4 115247593 115247654 -87080693 + L2 LINE L2 2645 2708 -606 219 318 0 0 chr4 115247698 115247764 -87080583 + L2 LINE L2 2853 2918 -395 372 43 0 0 chr4 115247778 115247824 -87080523 + (CA)n Simple_repeat Simple_repeat 2 47 0 504 293 84 59 chr4 115247840 115248198 -87080149 + L2 LINE L2 2947 3313 0 1146 154 123 58 chr4 115248329 115248551 -87079796 - MER33 DNA MER1_type -2261 324 77 2443 47 9 44 chr4 115248551 115248869 -87079478 - AluY SINE Alu -3 308 2 1146 154 123 58 chr4 115248869 115248939 -87079408 - MER33 DNA MER1_type -2508 77 13 2255 111 0 3 chr4 115249788 115250094 -87078253 + AluSq SINE Alu 1 305 -8 1848 168 16 3 chr4 115250129 115250611 -87077736 + AluJo SINE Alu 1 486 0 605 227 17 9 chr4 115250617 115251086 -87077261 + GA-rich Low_complexity Low_complexity 1 473 0 511 246 53 0 chr4 115251298 115251412 -87076935 + L2 LINE L2 3184 3303 -10 249 207 74 91 chr4 115251418 115251509 -87076838 + L1ME4a LINE L1 5974 6064 -57 2121 130 3 0 chr4 115251509 115251808 -87076539 - AluSx SINE Alu -12 300 1 249 207 74 91 chr4 115251808 115251837 -87076510 + L1ME4a LINE L1 6064 6092 -29 24 32 0 0 chr4 115251841 115251872 -87076475 + AT_rich Low_complexity Low_complexity 1 31 0 1431 111 111 0 chr4 115252068 115252275 -87076072 - MER30 DNA MER1_type 0 230 1 263 143 221 13 chr4 115252303 115252380 -87075967 - L1ME2 LINE L1 0 6164 6072 243 186 0 0 chr4 115252392 115252435 -87075912 - MER57B LTR ERV1 -66 368 326 457 181 12 0 chr4 115252442 115252525 -87075822 - L1ME2 LINE L1 -67 6097 6014 251 114 23 0 chr4 115253259 115253303 -87075044 + CT-rich Low_complexity Low_complexity 2 46 0 203 125 25 0 chr4 115254374 115254414 -87073933 + A-rich Low_complexity Low_complexity 4 44 0 3096 268 90 20 chr4 115255248 115255891 -87072456 + L2 LINE L2 1811 2408 -905 2257 105 0 19 chr4 115255891 115256204 -87072143 - AluSx SINE Alu -5 307 1 3096 268 90 20 chr4 115256204 115256384 -87071963 + L2 LINE L2 2408 2574 -739 5011 136 36 45 chr4 115256384 115256516 -87071831 - MER4D LTR ERV1 0 903 771 1475 160 0 44 chr4 115256516 115256644 -87071703 - AluJb SINE Alu -59 253 140 2463 28 41 0 chr4 115256644 115256935 -87071412 - AluY SINE Alu -8 303 1 1475 160 0 44 chr4 115256935 115257056 -87071291 - AluJb SINE Alu -172 140 15 5011 136 36 45 chr4 115257056 115257834 -87070513 - MER4D LTR ERV1 -132 771 1 3096 268 90 20 chr4 115257834 115258419 -87069928 + L2 LINE L2 2574 3313 0 399 216 20 20 chr4 115258899 115259001 -87069346 - MER113 DNA MER1_type? -32 489 388 1657 284 25 10 chr4 115259008 115259487 -87068860 + LTR16C LTR ERVL 1 486 -5 821 237 84 34 chr4 115259500 115259821 -87068526 - MER113 DNA MER1_type? -179 342 6 270 256 23 12 chr4 115260094 115260180 -87068167 - L1ME4a LINE L1 -68 6053 5967 205 238 0 0 chr4 115260343 115260385 -87067962 + CT-rich Low_complexity Low_complexity 1 42 0 192 250 69 78 chr4 115260775 115260823 -87067524 + L2 LINE L2 2635 2682 -632 2248 110 0 3 chr4 115260823 115261123 -87067224 - AluSx SINE Alu -13 299 1 192 250 69 78 chr4 115261123 115261190 -87067157 + L2 LINE L2 2682 2749 -565 281 320 45 67 chr4 115261499 115261768 -87066579 + L2 LINE L2 2927 3189 -83 362 180 135 34 chr4 115261888 115261977 -87066370 - MIR SINE MIR -114 148 51 1955 175 42 19 chr4 115262316 115262791 -87065556 - L1M2 LINE L1 -634 5657 5176 292 157 43 0 chr4 115262812 115262882 -87065465 + CT-rich Low_complexity Low_complexity 1 73 0 413 203 120 75 chr4 115262882 115263015 -87065332 - AluSg/x SINE Alu -3 307 169 242 250 0 0 chr4 115263015 115263063 -87065284 + MER2 DNA MER2_type 282 329 -16 329 224 80 109 chr4 115263078 115263279 -87065068 - HAL1 LINE L1 -910 1597 1403 3191 216 94 18 chr4 115263450 115264378 -87063969 + L1PBa LINE L1 6 1003 -5860 2223 102 3 3 chr4 115265478 115265772 -87062575 - AluSg SINE Alu -14 296 3 333 308 90 8 chr4 115265959 115266092 -87062255 + MIR3 SINE MIR 51 194 -14 574 119 0 34 chr4 115267414 115267532 -87060815 + (TTCC)n Simple_repeat Simple_repeat 4 117 0 2185 104 10 7 chr4 115267540 115267848 -87060499 - AluSq SINE Alu -4 309 1 297 171 45 102 chr4 115267871 115267959 -87060388 - L1MCc LINE L1 -5978 953 871 38 0 0 0 chr4 115269159 115269197 -87059150 + AT_rich Low_complexity Low_complexity 1 38 0 1035 65 0 0 chr4 115269197 115269321 -87059026 - L1PA3 LINE L1 -3 6152 6029 434 39 0 0 chr4 115269321 115269372 -87058975 + L1PA4 LINE L1 5842 5892 -263 802 167 16 0 chr4 115269622 115269748 -87058599 + FLAM_C SINE Alu 3 130 -13 183 100 0 0 chr4 115269750 115269780 -87058567 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 1578 207 3 16 chr4 115270031 115270060 -87058287 + L1PBa LINE L1 2029 2057 -4795 4261 38 23 2 chr4 115270060 115270540 -87057807 - LTR2B LTR ERV1 0 490 1 1578 207 3 16 chr4 115270540 115270829 -87057518 + L1PBa LINE L1 2057 2343 -4509 783 265 74 32 chr4 115271534 115271884 -87056463 - L1MCc LINE L1 -5708 714 3 233 353 29 29 chr4 115271979 115272081 -87056266 + MIR SINE MIR 39 140 -68 23 33 0 0 chr4 115272173 115272203 -87056144 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr4 115272229 115272258 -87056089 + AT_rich Low_complexity Low_complexity 1 29 0 3330 163 22 29 chr4 115272954 115273424 -87054923 - L1M1 LINE L1 -4900 2665 2200 854 162 0 183 chr4 115273424 115273659 -87054688 - 7SK RNA RNA 0 193 2 3330 163 22 29 chr4 115273659 115273877 -87054470 - L1M1 LINE L1 -5365 2200 1982 3349 166 46 5 chr4 115274084 115275018 -87053329 + L1PA15 LINE L1 4927 5900 -265 351 335 134 6 chr4 115275595 115275759 -87052588 + L2 LINE L2 3088 3272 0 195 265 85 146 chr4 115275888 115276148 -87052199 + L2 LINE L2 2836 3079 -193 235 273 0 30 chr4 115276163 115276229 -87052118 + L2 LINE L2 3250 3313 0 203 0 37 0 chr4 115276429 115276456 -87051891 + (GGAA)n Simple_repeat Simple_repeat 4 31 0 997 70 14 0 chr4 115276475 115276618 -87051729 + (GGAA)n Simple_repeat Simple_repeat 2 146 0 669 123 0 0 chr4 115276642 115276748 -87051599 + (GGAA)n Simple_repeat Simple_repeat 2 107 0 701 176 82 53 chr4 115277963 115278133 -87050214 - MER96 DNA MER1_type 0 175 1 597 205 17 8 chr4 115278449 115278566 -87049781 + MER45A DNA AcHobo 51 168 -10 954 288 56 60 chr4 115278660 115279157 -87049190 + L2 LINE L2 2767 3259 -13 436 229 58 0 chr4 115280676 115280791 -87047556 + MIR SINE MIR 54 176 -65 622 231 67 67 chr4 115280812 115281037 -87047310 - L2 LINE L2 -4 3309 3085 279 122 0 0 chr4 115281043 115281084 -87047263 - LTR16A LTR ERVL -3 447 407 984 275 78 8 chr4 115281127 115281371 -87046976 - LTR16A LTR ERVL -157 293 33 857 303 21 15 chr4 115281486 115281783 -87046564 - L2 LINE L2 -234 3079 2782 250 307 13 0 chr4 115281771 115281846 -87046501 + MIR SINE MIR 159 234 -28 * 270 0 0 0 chr4 115281862 115281892 -87046455 + (CAT)n Simple_repeat Simple_repeat 2 31 0 24 67 0 0 chr4 115281996 115282041 -87046306 + AT_rich Low_complexity Low_complexity 1 45 0 390 167 14 0 chr4 115282277 115282349 -87045998 + MER116 DNA Mariner 5 77 -3 261 239 169 54 chr4 115282845 115282975 -87045372 - L1MC4 LINE L1 0 8042 7898 242 258 15 0 chr4 115282975 115283041 -87045306 + (TA)n Simple_repeat Simple_repeat 1 67 0 880 231 42 79 chr4 115283045 115283084 -87045263 - L1MC4 LINE L1 -112 7930 7891 2001 139 3 14 chr4 115283084 115283379 -87044968 - AluSx SINE Alu -20 292 1 880 231 42 79 chr4 115283379 115283742 -87044605 - L1MC4 LINE L1 -151 7891 7543 333 136 0 0 chr4 115284165 115284231 -87044116 + (TC)n Simple_repeat Simple_repeat 2 67 0 254 328 84 15 chr4 115284684 115284815 -87043532 + MIR3 SINE MIR 6 145 -63 2281 114 0 3 chr4 115285014 115285322 -87043025 + AluSx SINE Alu 1 307 -5 22 35 0 0 chr4 115285409 115285438 -87042909 + AT_rich Low_complexity Low_complexity 1 29 0 690 164 0 8 chr4 115285497 115285619 -87042728 + L1MC1 LINE L1 6152 6272 -61 1256 291 33 19 chr4 115285809 115286228 -87042119 + LTR16A LTR ERVL 26 450 0 529 289 75 10 chr4 115286237 115286438 -87041909 + HERV16 LTR ERVL 11 224 -4772 3405 271 109 32 chr4 115286441 115286588 -87041759 + HERV16 LTR ERVL 1377 1511 -3485 6440 92 14 3 chr4 115286588 115287449 -87040898 + L1MA2 LINE L1 5435 6304 0 3405 271 109 32 chr4 115287449 115288024 -87040323 + HERV16 LTR ERVL 1511 2041 -2955 2357 151 8 3 chr4 115288024 115288388 -87039959 + MER47A DNA MER2_type 1 366 0 3405 271 109 32 chr4 115288388 115288935 -87039412 + HERV16 LTR ERVL 2041 2744 -2252 1433 317 47 22 chr4 115288966 115289515 -87038832 + HERV16 LTR ERVL 2846 3408 -2356 224 163 20 20 chr4 115289651 115289700 -87038647 + CT-rich Low_complexity Low_complexity 2 50 0 429 311 89 22 chr4 115289971 115290376 -87037971 - L1M4 LINE L1 -1538 4608 4177 512 160 19 38 chr4 115290381 115290487 -87037860 - MLT1F1 LTR MaLR 0 567 464 698 219 39 0 chr4 115290490 115290645 -87037702 - MLT1F1 LTR MaLR -406 161 1 477 279 105 34 chr4 115290661 115291190 -87037157 - L1M4 LINE L1 -1979 4167 3599 222 360 33 0 chr4 115292132 115292236 -87036111 + MIR3 SINE MIR 75 183 -25 213 163 23 0 chr4 115292783 115292826 -87035521 + A-rich Low_complexity Low_complexity 4 47 0 2173 134 0 0 chr4 115293053 115293351 -87034996 + AluSx SINE Alu 1 298 -14 240 258 22 84 chr4 115293400 115293578 -87034769 - L1M4 LINE L1 -1493 4653 4487 2322 93 0 3 chr4 115293720 115294022 -87034325 - AluY SINE Alu -10 301 1 22 0 0 0 chr4 115294206 115294228 -87034119 + AT_rich Low_complexity Low_complexity 1 22 0 1378 166 7 35 chr4 115294236 115294302 -87034045 - L1MD3 LINE L1 -1 7994 7928 1958 164 3 0 chr4 115294302 115294595 -87033752 + AluJo SINE Alu 1 294 -18 1378 166 7 35 chr4 115294595 115294812 -87033535 - L1MD3 LINE L1 -67 7928 7719 544 238 65 36 chr4 115295182 115295350 -87032997 + MIR SINE MIR 13 185 -77 197 247 39 26 chr4 115296766 115296843 -87031504 - L2 LINE L2 -92 3221 3144 1182 256 77 86 chr4 115298817 115299059 -87029288 - L1MC4a LINE L1 -1885 5923 5680 255 114 0 0 chr4 115299059 115299094 -87029253 + AluY SINE Alu 208 242 -59 1182 256 77 86 chr4 115299094 115299390 -87028957 - L1MC4a LINE L1 -2128 5680 5356 759 128 68 8 chr4 115299392 115299509 -87028838 - FRAM SINE Alu -18 158 35 273 291 12 17 chr4 115299509 115299681 -87028666 - L1MC4a LINE L1 -780 5366 5196 30 27 0 0 chr4 115302042 115302079 -87026268 + AT_rich Low_complexity Low_complexity 1 37 0 1824 187 3 0 chr4 115302565 115302870 -87025477 - AluJo SINE Alu -6 306 1 1728 173 3 3 chr4 115302891 115303210 -87025137 - AluJo SINE Alu 0 319 1 378 204 45 0 chr4 115303213 115303301 -87025046 - MIR SINE MIR -66 196 105 362 277 52 66 chr4 115303426 115303639 -87024708 - L2 LINE L2 0 3313 3104 396 313 80 35 chr4 115303781 115304069 -87024278 - L2 LINE L2 -405 2909 2609 919 168 0 89 chr4 115304290 115304337 -87024010 + AluJb SINE Alu 90 140 -172 2317 50 47 3 chr4 115304337 115304635 -87023712 + AluY SINE Alu 1 311 0 919 168 0 89 chr4 115304635 115304778 -87023569 + AluJb SINE Alu 140 263 -49 741 186 190 30 chr4 115304843 115305080 -87023267 + ORSL DNA AcHobo 1 275 0 258 301 27 0 chr4 115305642 115305715 -87022632 + LTR67 LTR ERVL 125 199 -358 283 239 0 0 chr4 115305863 115305930 -87022417 - MLT1H LTR MaLR -470 79 13 1129 260 20 10 chr4 115305936 115306236 -87022111 - L2 LINE L2 -582 2732 2430 366 314 216 15 chr4 115306519 115306857 -87021490 + L2 LINE L2 2572 2977 -337 185 256 0 0 chr4 115307039 115307078 -87021269 - L2 LINE L2 -296 3017 2979 2021 182 7 113 chr4 115307462 115307815 -87020532 - MLT1D LTR MaLR 0 505 233 1794 170 3 10 chr4 115307815 115308109 -87020238 - AluJo SINE Alu -20 292 1 2021 182 7 113 chr4 115308109 115308320 -87020027 - MLT1D LTR MaLR -272 233 1 461 228 20 32 chr4 115308419 115308580 -87019767 - MLT1L LTR MaLR -110 478 257 446 308 82 5 chr4 115308648 115308843 -87019504 - LTR16A1 LTR ERVL 0 457 248 2034 158 0 0 chr4 115309278 115309576 -87018771 + AluSx SINE Alu 1 298 -14 229 234 16 31 chr4 115309587 115309651 -87018696 - MLT1L LTR MaLR -550 65 3 1893 123 38 14 chr4 115310098 115310390 -87017957 - AluSq SINE Alu -14 299 1 3143 189 16 38 chr4 115311271 115311938 -87016409 - MER82 DNA MER2_type 0 653 1 1820 130 56 11 chr4 115312290 115312574 -87015773 - AluSx SINE Alu 0 312 16 403 239 83 0 chr4 115312618 115312727 -87015620 - MIR SINE MIR -17 245 128 21 57 0 0 chr4 115313052 115313087 -87015260 + AT_rich Low_complexity Low_complexity 1 35 0 381 279 90 8 chr4 115314463 115314585 -87013762 + MIR3 SINE MIR 50 181 -27 252 284 92 28 chr4 115316064 115316173 -87012174 + MIR SINE MIR 46 161 -101 484 207 16 0 chr4 115316379 115316500 -87011847 + (TA)n Simple_repeat Simple_repeat 1 123 0 260 298 132 25 chr4 115316919 115317040 -87011307 - L2 LINE L2 0 3272 3139 709 245 82 5 chr4 115317102 115317286 -87011061 + MIR SINE MIR 61 258 -4 2409 78 7 0 chr4 115317824 115318130 -87010217 - AluY SINE Alu -3 308 1 4469 82 48 0 chr4 115318130 115318780 -87009567 - L1PA14 LINE L1 -4 6157 5477 411 88 0 0 chr4 115318782 115318839 -87009508 - AluSg/x SINE Alu -178 132 76 1422 142 5 0 chr4 115318839 115319050 -87009297 - AluSx SINE Alu -100 212 1 2809 139 15 2 chr4 115319053 115319722 -87008625 - L1P4 LINE L1 -672 5489 4812 2154 106 0 0 chr4 115319875 115320193 -87008154 + AluSq SINE Alu 2 319 0 2021 123 48 6 chr4 115321036 115321370 -87006977 - MER7A DNA MER2_type 0 346 1 2295 105 0 7 chr4 115321533 115321829 -87006518 + AluSg SINE Alu 1 294 -16 1448 230 73 15 chr4 115321840 115322248 -87006099 + MER63B DNA MER1_type 4 435 -1 354 374 30 40 chr4 115322491 115322689 -87005658 + MIR3 SINE MIR 4 199 -9 304 227 27 0 chr4 115323144 115323219 -87005128 - L1ME4a LINE L1 0 6121 6045 772 260 98 8 chr4 115323330 115323565 -87004782 + MIR SINE MIR 4 259 -3 253 227 67 27 chr4 115323570 115323645 -87004702 - L1ME4a LINE L1 -2008 5800 5723 272 112 80 152 chr4 115324373 115324498 -87003849 - MLT2C1 LTR ERVL -121 276 161 272 167 31 135 chr4 115324496 115324527 -87003820 - MLT2C1 LTR ERVL -311 86 53 707 202 8 23 chr4 115324527 115324656 -87003691 - FLAM_A SINE Alu -6 127 1 272 167 31 135 chr4 115324656 115324720 -87003627 - MLT2C1 LTR ERVL -344 53 1 1624 117 26 0 chr4 115325177 115325441 -87002906 + L1PA15 LINE L1 5750 6020 -145 250 274 35 53 chr4 115325808 115325921 -87002426 - L2 LINE L2 -4 3268 3158 22 0 0 0 chr4 115326962 115326984 -87001363 + AT_rich Low_complexity Low_complexity 1 22 0 747 282 123 0 chr4 115327363 115327583 -87000764 + MIR SINE MIR 16 262 0 1884 140 29 29 chr4 115328260 115328602 -86999745 + MER2 DNA MER2_type 1 342 -2 520 273 73 39 chr4 115328732 115328937 -86999410 + MIR SINE MIR 20 231 -31 1396 205 109 36 chr4 115329231 115329653 -86998694 - L1MA9 LINE L1 -34 6278 5888 1652 131 208 38 chr4 115329653 115330019 -86998328 - MSTA LTR MaLR 0 428 1 1396 205 109 36 chr4 115330019 115330056 -86998291 - L1MA9 LINE L1 -424 5888 5855 198 0 0 0 chr4 115330056 115330078 -86998269 + (TA)n Simple_repeat Simple_repeat 1 22 0 1396 205 109 36 chr4 115330078 115330114 -86998233 - L1MA9 LINE L1 -457 5855 5746 722 89 0 0 chr4 115330126 115330227 -86998120 + MSTA LTR MaLR 327 427 -1 654 174 108 20 chr4 115330229 115330360 -86997987 - L1MA9 LINE L1 -768 5378 5223 266 73 24 0 chr4 115330360 115330401 -86997946 + (TA)n Simple_repeat Simple_repeat 2 43 0 654 174 108 20 chr4 115330401 115330464 -86997883 - L1MA9 LINE L1 -923 5223 5167 360 312 188 43 chr4 115330507 115330789 -86997558 + HAL1b LINE L1 351 673 -675 21 0 0 0 chr4 115331050 115331071 -86997276 + AT_rich Low_complexity Low_complexity 1 21 0 1915 134 32 0 chr4 115331126 115331403 -86996944 - AluJb SINE Alu -19 293 8 347 330 26 64 chr4 115331848 115332193 -86996154 + L1ME LINE L1 5273 5604 -517 4245 123 11 20 chr4 115332214 115332344 -86996003 - L1PA15 LINE L1 -3 6162 6032 2028 123 7 29 chr4 115332344 115332652 -86995695 - AluSx SINE Alu -11 301 1 4245 123 11 20 chr4 115332652 115333214 -86995133 - L1PA15 LINE L1 -133 6032 5476 665 190 22 7 chr4 115333214 115333351 -86994996 - BC200 scRNA scRNA -57 143 5 12561 203 16 16 chr4 115333354 115336566 -86991781 - L1PA15 LINE L1 -681 5484 2282 492 200 130 0 chr4 115336649 115336749 -86991598 + FLAM_C SINE Alu 1 113 -30 275 374 32 19 chr4 115337546 115337701 -86990646 + L2 LINE L2 2908 3064 -208 362 274 120 37 chr4 115337892 115338217 -86990130 - L2 LINE L2 -1785 1529 1178 562 327 54 0 chr4 115338248 115338471 -86989876 - MIR SINE MIR 0 262 28 206 234 85 0 chr4 115338915 115338962 -86989385 + L2 LINE L2 3222 3272 0 2112 104 10 13 chr4 115340209 115340507 -86987840 - AluSg SINE Alu -13 297 1 1005 424 78 4 chr4 115340540 115340821 -86987526 + AluSq SINE Alu 1 302 -1 2162 136 31 19 chr4 115341559 115341919 -86986428 - THE1B LTR MaLR 0 364 1 239 348 50 18 chr4 115342286 115342507 -86985840 - L2 LINE L2 -1453 1861 1634 408 316 218 0 chr4 115343948 115344154 -86984193 - MIR SINE MIR -4 258 8 282 258 0 0 chr4 115344540 115344602 -86983745 + (TG)n Simple_repeat Simple_repeat 1 62 0 1949 146 0 14 chr4 115344732 115345026 -86983321 + AluJb SINE Alu 1 290 -22 391 277 143 39 chr4 115345659 115345850 -86982497 + MIR SINE MIR 43 248 -14 1513 235 6 0 chr4 115346210 115346559 -86981788 + L1ME3 LINE L1 5561 5911 -259 926 277 49 56 chr4 115346559 115347068 -86981279 + MLT1H LTR MaLR 1 547 -2 843 215 101 4 chr4 115347070 115347298 -86981049 + L1ME3 LINE L1 5907 6156 -6 201 39 0 0 chr4 115347299 115347325 -86981022 + (CA)n Simple_repeat Simple_repeat 2 27 0 807 205 0 6 chr4 115347639 115347800 -86980547 + FRAM SINE Alu 2 161 -5 483 238 149 11 chr4 115348195 115348376 -86979971 + MLT1K LTR MaLR 376 581 -7 456 19 0 0 chr4 115349080 115349133 -86979214 + (TA)n Simple_repeat Simple_repeat 2 54 0 193 341 32 32 chr4 115349171 115349297 -86979050 + L2 LINE L2 3106 3231 -41 3433 239 70 16 chr4 115350314 115351414 -86976933 + L1MEc LINE L1 40 1199 -5197 1398 242 84 13 chr4 115351470 115351920 -86976427 + L1ME1 LINE L1 5680 6161 -5 242 164 18 0 chr4 115351963 115352018 -86976329 + GA-rich Low_complexity Low_complexity 4 59 0 5767 44 3 1 chr4 115352403 115353104 -86975243 + L1PA5 LINE L1 5452 6153 -1 21 0 0 0 chr4 115353945 115353966 -86974381 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 115353993 115354018 -86974329 + AT_rich Low_complexity Low_complexity 1 25 0 192 143 43 0 chr4 115354089 115354159 -86974188 + (TA)n Simple_repeat Simple_repeat 1 73 0 297 0 0 0 chr4 115354167 115354200 -86974147 + (TC)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chr4 115354199 115354228 -86974119 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 1889 154 4 0 chr4 115354244 115354523 -86973824 - AluJb SINE Alu -30 282 3 384 376 86 21 chr4 115355070 115355629 -86972718 + L2 LINE L2 2224 2818 -496 1157 270 112 34 chr4 115356980 115357506 -86970841 - MLT1K LTR MaLR -12 576 10 251 224 52 0 chr4 115357743 115357801 -86970546 - MIR SINE MIR -18 244 184 22 70 0 0 chr4 115357924 115357967 -86970380 + AT_rich Low_complexity Low_complexity 1 43 0 3708 206 46 16 chr4 115358874 115359774 -86968573 - MER63C DNA MER1_type -3 927 1 349 319 89 25 chr4 115360615 115360772 -86967575 + MIR3 SINE MIR 31 197 -11 29 28 0 0 chr4 115361276 115361312 -86967035 + AT_rich Low_complexity Low_complexity 1 36 0 189 107 0 0 chr4 115362242 115362270 -86966077 + (CCAA)n Simple_repeat Simple_repeat 1 28 0 577 307 110 18 chr4 115364026 115364254 -86964093 - MIR SINE MIR 0 262 14 186 266 125 0 chr4 115364537 115364601 -86963746 - MIR SINE MIR -132 130 59 724 292 143 5 chr4 115365107 115365552 -86962795 - L2 LINE L2 -49 3264 2762 559 196 9 9 chr4 115365554 115365661 -86962686 + Tigger3(Golem) DNA MER2_type 2 108 -2921 * 4286 107 42 14 chr4 115365652 115365910 -86962437 + Tigger3(Golem) DNA MER2_type 2278 2527 -502 2109 119 0 44 chr4 115365910 115366229 -86962118 - AluSx SINE Alu -7 305 1 4286 107 42 14 chr4 115366229 115366700 -86961647 + Tigger3(Golem) DNA MER2_type 2527 3028 -1 405 298 161 18 chr4 115366705 115366873 -86961474 - L2 LINE L2 -557 2757 2566 410 230 75 63 chr4 115366893 115367067 -86961280 - L2 LINE L2 -904 2410 2235 318 326 0 45 chr4 115367565 115367697 -86960650 - L2 LINE L2 -177 3095 2970 3913 38 0 0 chr4 115367862 115368334 -86960013 + L1PA3 LINE L1 5684 6155 0 9110 29 1 0 chr4 115368400 115369537 -86958810 - L1PA3 LINE L1 -1000 5146 4009 7570 32 0 1 chr4 115369537 115370550 -86957797 + L1PA3 LINE L1 5141 6152 -3 38 0 0 0 chr4 115370550 115370588 -86957759 + AT_rich Low_complexity Low_complexity 1 38 0 347 261 144 26 chr4 115371416 115371569 -86956778 + MIR SINE MIR 89 259 -3 27 87 0 0 chr4 115372003 115372072 -86956275 + AT_rich Low_complexity Low_complexity 1 69 0 1770 176 72 19 chr4 115372123 115372497 -86955850 + MSTD LTR MaLR 1 394 -2 423 254 17 8 chr4 115372501 115372619 -86955728 - MER94 DNA DNA 0 134 16 560 252 167 64 chr4 115373634 115373868 -86954479 - MIR SINE MIR -3 259 2 331 296 0 19 chr4 115374006 115374114 -86954233 - L3b LINE CR1 -345 1238 1133 263 244 11 33 chr4 115376177 115376267 -86952080 + CT-rich Low_complexity Low_complexity 1 88 0 342 303 23 8 chr4 115376301 115376433 -86951914 - L1M4 LINE L1 -906 5240 5107 194 222 63 48 chr4 115376778 115376841 -86951506 + MIR SINE MIR 199 262 0 252 0 0 0 chr4 115377605 115377633 -86950714 + (TC)n Simple_repeat Simple_repeat 2 29 0 237 65 0 0 chr4 115377632 115377663 -86950684 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 2002 123 0 0 chr4 115377663 115377966 -86950381 - AluSx SINE Alu 0 311 9 211 264 42 14 chr4 115377976 115378048 -86950299 - L3b LINE CR1 -257 1326 1253 738 209 80 45 chr4 115378070 115378271 -86950076 - MER63A DNA MER1_type -1 209 2 243 304 89 68 chr4 115378524 115378715 -86949632 + MLT1K LTR MaLR 4 198 -390 729 257 107 16 chr4 115378860 115379113 -86949234 + MLT1K LTR MaLR 313 588 0 630 332 115 52 chr4 115379115 115379321 -86949026 - L3 LINE CR1 -75 1502 1310 1485 128 5 0 chr4 115379321 115379532 -86948815 - AluJo SINE Alu -18 294 83 630 332 115 52 chr4 115379532 115379786 -86948561 - L3 LINE CR1 -267 1310 1013 560 91 0 0 chr4 115382263 115382340 -86946007 - MADE1 DNA Mariner 0 80 4 180 97 0 0 chr4 115382500 115382531 -86945816 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 810 179 6 6 chr4 115382531 115382687 -86945660 - L1MB1 LINE L1 -8 6160 6005 242 146 0 0 chr4 115382808 115382849 -86945498 - MSTA LTR MaLR 0 428 388 717 201 76 0 chr4 115382854 115382998 -86945349 + FAM SINE Alu 3 157 -18 1667 134 134 38 chr4 115383015 115383381 -86944966 - MSTA LTR MaLR -27 401 1 306 89 0 0 chr4 115383692 115383737 -86944610 + L1MB7 LINE L1 6130 6174 -10 469 164 0 17 chr4 115383744 115383772 -86944575 + (TA)n Simple_repeat Simple_repeat 2 29 -86 849 206 272 13 chr4 115383772 115384000 -86944347 + AluJo SINE Alu 1 287 -15 469 164 0 17 chr4 115384000 115384087 -86944260 + (TA)n Simple_repeat Simple_repeat 29 115 0 1488 211 103 33 chr4 115384596 115385079 -86943268 + L1MC5 LINE L1 6998 7514 -447 * 4446 152 22 63 chr4 115385058 115386163 -86942184 + L1MA9 LINE L1 5203 6262 -50 22 35 0 0 chr4 115386350 115386379 -86941968 + AT_rich Low_complexity Low_complexity 1 29 0 270 204 88 71 chr4 115386445 115386558 -86941789 + L1ME3A LINE L1 5968 6082 -88 4308 105 31 3 chr4 115386569 115387186 -86941161 - MER51A LTR ERV1 0 634 1 554 153 10 0 chr4 115388241 115388339 -86940008 - L1PB4 LINE L1 -4 6152 6054 200 210 100 150 chr4 115388448 115388524 -86939823 + MER5A DNA MER1_type 95 166 -23 2019 157 3 0 chr4 115388524 115388817 -86939530 + AluJo SINE Alu 3 296 -16 200 210 100 150 chr4 115388817 115388840 -86939507 + MER5A DNA MER1_type 166 189 0 370 331 50 0 chr4 115388918 115389079 -86939268 + MIR SINE MIR 15 181 -63 400 349 24 12 chr4 115391085 115391251 -86937096 - MER5A DNA MER1_type -20 169 2 1985 120 0 7 chr4 115391775 115392074 -86936273 - AluSc SINE Alu -10 299 3 224 239 65 54 chr4 115392525 115392617 -86935730 + MER5A DNA MER1_type 95 187 -2 * 494 222 0 0 chr4 115392540 115392630 -86935717 - MER5A DNA MER1_type -96 93 4 353 356 54 10 chr4 115393554 115393759 -86934588 + L3b LINE CR1 1102 1315 -268 356 213 12 12 chr4 115394356 115394436 -86933911 - MLT1C LTR MaLR -52 415 336 1006 176 0 0 chr4 115394606 115394759 -86933588 + FRAM SINE Alu 1 152 -24 21 71 0 0 chr4 115394759 115394801 -86933546 + AT_rich Low_complexity Low_complexity 1 42 0 279 288 0 0 chr4 115396219 115396299 -86932048 - MER117 DNA MER1_type -72 125 46 259 303 45 22 chr4 115396537 115396626 -86931721 + L2 LINE L2 3182 3272 0 1838 171 0 28 chr4 115396639 115396960 -86931387 + AluJb SINE Alu 1 312 0 768 189 176 0 chr4 115397344 115397497 -86930850 - MER5A DNA MER1_type 0 189 10 285 248 292 7 chr4 115397604 115397741 -86930606 - MIR SINE MIR -58 204 29 288 206 28 156 chr4 115397973 115398153 -86930194 + L1MC/D LINE L1 5717 5873 -1935 2214 93 104 17 chr4 115398386 115398731 -86929616 + THE1C LTR MaLR 1 375 0 272 30 0 0 chr4 115399021 115399054 -86929293 + U2 snRNA snRNA 2 34 -154 849 238 67 9 chr4 115399089 115399319 -86929028 - MIR SINE MIR -11 251 11 344 244 13 0 chr4 115399653 115399731 -86928616 - L2 LINE L2 0 3313 3235 364 270 34 42 chr4 115399912 115400200 -86928147 - L1ME LINE L1 -573 5548 5263 35 0 0 0 chr4 115400321 115400356 -86927991 + AT_rich Low_complexity Low_complexity 1 35 0 186 43 0 0 chr4 115400361 115400384 -86927963 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1568 169 8 11 chr4 115400388 115400654 -86927693 - AluJb SINE Alu -4 308 44 580 152 0 0 chr4 115400655 115400747 -86927600 - AluJ/FLAM SINE Alu -220 92 1 24 32 0 0 chr4 115400749 115400780 -86927567 + AT_rich Low_complexity Low_complexity 1 31 0 6203 127 9 9 chr4 115400781 115402138 -86926209 - L1PB1 LINE L1 -6 6145 4792 942 137 0 0 chr4 115402138 115402306 -86926041 + L1PB1 LINE L1 4621 4788 -1358 2148 135 7 0 chr4 115402477 115402781 -86925566 + AluSx SINE Alu 1 306 -6 656 353 84 20 chr4 115402798 115403396 -86924951 - L1ME LINE L1 -1327 4819 4184 1804 111 32 0 chr4 115404151 115404429 -86923918 + AluSx SINE Alu 21 306 0 583 278 137 9 chr4 115404447 115404659 -86923688 + MIR SINE MIR 6 244 -18 2266 121 0 0 chr4 115404734 115405031 -86923316 + AluSx SINE Alu 1 297 -15 214 215 177 85 chr4 115405341 115405471 -86922876 - MIR3 SINE MIR -61 147 6 392 331 11 34 chr4 115405502 115405677 -86922670 + MIR SINE MIR 13 183 -79 821 199 70 0 chr4 115406005 115406176 -86922171 - MER5A DNA MER1_type -6 183 1 316 256 146 0 chr4 115407221 115407303 -86921044 + MER117 DNA MER1_type 49 142 -55 394 235 45 25 chr4 115407904 115408038 -86920309 - MIR3 SINE MIR -51 157 25 353 318 91 7 chr4 115408034 115408188 -86920159 + MIR SINE MIR 82 248 -14 * 193 320 0 0 chr4 115408206 115408256 -86920091 + MIR SINE MIR 213 262 0 2315 110 3 0 chr4 115408590 115408900 -86919447 - AluSq SINE Alu -2 311 1 1496 206 85 46 chr4 115409214 115409357 -86918990 - Charlie4a DNA MER1_type -1458 503 367 1958 138 28 42 chr4 115409357 115409439 -86918908 + L1MC1 LINE L1 5984 6066 -267 4542 114 17 63 chr4 115409439 115410164 -86918183 - LTR8 LTR ERV1 0 691 1 1958 138 28 42 chr4 115410164 115410436 -86917911 + L1MC1 LINE L1 6066 6333 0 1496 206 85 46 chr4 115410436 115410753 -86917594 - Charlie4a DNA MER1_type -1594 367 25 2124 106 48 0 chr4 115411085 115411378 -86916969 - AluSx SINE Alu -5 307 1 236 204 111 111 chr4 115411722 115411767 -86916580 - MER117 DNA MER1_type -82 115 71 2784 193 82 86 chr4 115411767 115412596 -86915751 + LTR1B LTR ERV1 1 826 0 236 204 111 111 chr4 115412596 115412658 -86915689 - MER117 DNA MER1_type -125 72 8 265 250 180 10 chr4 115413094 115413194 -86915153 + L2 LINE L2 3197 3313 0 195 265 85 146 chr4 115413323 115413583 -86914764 + L2 LINE L2 2836 3079 -193 235 273 0 30 chr4 115413598 115413664 -86914683 + L2 LINE L2 3250 3313 0 203 0 37 0 chr4 115413864 115413891 -86914456 + (GGAA)n Simple_repeat Simple_repeat 4 31 0 997 70 14 0 chr4 115413910 115414053 -86914294 + (GGAA)n Simple_repeat Simple_repeat 2 146 0 669 123 0 0 chr4 115414077 115414183 -86914164 + (GGAA)n Simple_repeat Simple_repeat 2 107 0 701 176 82 53 chr4 115415398 115415568 -86912779 - MER96 DNA MER1_type 0 175 1 616 197 17 8 chr4 115415884 115416001 -86912346 + MER45A DNA AcHobo 51 168 -10 954 288 56 60 chr4 115416095 115416592 -86911755 + L2 LINE L2 2767 3259 -13 436 229 58 0 chr4 115418111 115418226 -86910121 + MIR SINE MIR 54 176 -65 622 231 67 67 chr4 115418247 115418472 -86909875 - L2 LINE L2 -4 3309 3085 279 122 0 0 chr4 115418478 115418519 -86909828 - LTR16A LTR ERVL -3 447 407 963 279 78 8 chr4 115418562 115418806 -86909541 - LTR16A LTR ERVL -157 293 33 857 303 21 15 chr4 115418921 115419218 -86909129 - L2 LINE L2 -234 3079 2782 250 307 13 0 chr4 115419206 115419281 -86909066 + MIR SINE MIR 159 234 -28 * 378 0 0 0 chr4 115419297 115419339 -86909008 + (CAT)n Simple_repeat Simple_repeat 2 43 0 24 67 0 0 chr4 115419443 115419488 -86908859 + AT_rich Low_complexity Low_complexity 1 45 0 390 167 14 0 chr4 115419724 115419796 -86908551 + MER116 DNA Mariner 5 77 -3 261 239 169 54 chr4 115420292 115420422 -86907925 - L1MC4 LINE L1 0 8042 7898 242 258 15 0 chr4 115420422 115420488 -86907859 + (TA)n Simple_repeat Simple_repeat 2 68 0 880 231 42 79 chr4 115420492 115420531 -86907816 - L1MC4 LINE L1 -112 7930 7891 2013 141 3 13 chr4 115420531 115420829 -86907518 - AluSx SINE Alu -17 295 1 880 231 42 79 chr4 115420829 115421192 -86907155 - L1MC4 LINE L1 -151 7891 7543 333 136 0 0 chr4 115421615 115421681 -86906666 + (TC)n Simple_repeat Simple_repeat 2 67 0 254 328 84 15 chr4 115422140 115422271 -86906076 + MIR3 SINE MIR 6 145 -63 2289 113 0 3 chr4 115422470 115422779 -86905568 + AluSx SINE Alu 1 308 -4 22 35 0 0 chr4 115422866 115422895 -86905452 + AT_rich Low_complexity Low_complexity 1 29 0 690 164 0 8 chr4 115422954 115423076 -86905271 + L1MC1 LINE L1 6152 6272 -61 1251 289 33 19 chr4 115423266 115423685 -86904662 + LTR16A LTR ERVL 26 450 0 529 289 75 10 chr4 115423694 115423895 -86904452 + HERV16 LTR ERVL 11 224 -4772 3427 272 109 31 chr4 115423898 115424045 -86904302 + HERV16 LTR ERVL 1377 1511 -3485 6438 93 13 3 chr4 115424045 115424907 -86903440 + L1MA2 LINE L1 5435 6304 0 3427 272 109 31 chr4 115424907 115425482 -86902865 + HERV16 LTR ERVL 1511 2040 -2956 2357 151 8 3 chr4 115425482 115425846 -86902501 + MER47A DNA MER2_type 1 366 0 3427 272 109 31 chr4 115425846 115426392 -86901955 + HERV16 LTR ERVL 2040 2744 -2252 2049 305 80 37 chr4 115426423 115427654 -86900693 + HERV16 LTR ERVL 2846 3803 -1193 850 341 137 21 chr4 115427907 115428557 -86899790 + HERV16 LTR ERVL 4213 4937 -827 669 297 47 40 chr4 115428584 115428860 -86899487 + L2 LINE L2 3036 3313 0 364 258 154 36 chr4 115428868 115429089 -86899258 - L1ME4a LINE L1 -295 5826 5580 402 286 208 6 chr4 115429885 115430063 -86898284 + MIR SINE MIR 49 262 0 467 315 52 75 chr4 115430545 115430853 -86897494 - L2 LINE L2 0 3272 2972 4271 118 5 30 chr4 115430934 115431570 -86896777 + L1PA16 LINE L1 5544 6163 -3 224 163 20 20 chr4 115432080 115432129 -86896218 + CT-rich Low_complexity Low_complexity 2 50 0 305 291 112 45 chr4 115432400 115432802 -86895545 - L1ME4a LINE L1 -1538 4608 4180 512 160 19 38 chr4 115432810 115432916 -86895431 - MLT1F1 LTR MaLR 0 567 464 698 219 39 0 chr4 115432919 115433074 -86895273 - MLT1F1 LTR MaLR -406 161 1 323 297 67 50 chr4 115433080 115433380 -86894967 - L1ME4a LINE L1 -1967 4179 3875 458 254 91 26 chr4 115433387 115433619 -86894728 - L1ME4a LINE L1 -2301 3845 3599 222 360 33 0 chr4 115434560 115434664 -86893683 + MIR3 SINE MIR 75 183 -25 231 36 0 0 chr4 115435160 115435188 -86893159 + (T)n Simple_repeat Simple_repeat 1 28 0 387 317 76 14 chr4 115437716 115437861 -86890486 + MIR SINE MIR 33 186 -76 257 247 34 22 chr4 115438581 115438670 -86889677 - L1P2 LINE L1 -387 5767 5678 190 276 52 0 chr4 115440099 115440157 -86888190 - MIR SINE MIR -196 66 6 291 272 37 0 chr4 115440192 115440273 -86888074 - MIR SINE MIR -33 229 146 277 284 223 34 chr4 115440273 115440569 -86887778 - MLT1J1 LTR MaLR -31 415 64 399 308 41 7 chr4 115440721 115440867 -86887480 - MIR SINE MIR -110 152 2 511 239 90 18 chr4 115441596 115441763 -86886584 + MIR SINE MIR 83 261 -1 285 235 204 10 chr4 115442113 115442211 -86886136 + L2 LINE L2 3153 3269 -3 328 194 97 0 chr4 115443006 115443078 -86885269 + MIR SINE MIR 76 154 -108 25 90 0 0 chr4 115443087 115443154 -86885193 + AT_rich Low_complexity Low_complexity 1 67 0 197 364 136 17 chr4 115443632 115443663 -86884684 + L2 LINE L2 1043 1069 -2245 2023 119 16 29 chr4 115443663 115443974 -86884373 - AluSx SINE Alu -5 307 1 197 364 136 17 chr4 115443974 115444118 -86884229 + L2 LINE L2 1069 1239 -2075 2247 119 0 3 chr4 115445346 115445658 -86882689 - AluSx SINE Alu -1 311 1 1658 222 0 0 chr4 115446999 115447301 -86881046 + AluJo SINE Alu 1 302 -10 417 45 318 0 chr4 115447306 115447372 -86880975 + L1MB3 LINE L1 6056 6142 -41 183 80 0 0 chr4 115447373 115447398 -86880949 + (TG)n Simple_repeat Simple_repeat 2 26 0 206 283 124 41 chr4 115448379 115448524 -86879823 - MIR SINE MIR -29 233 77 2306 117 0 0 chr4 115448954 115449261 -86879086 + AluSc SINE Alu 3 309 0 185 162 0 0 chr4 115449629 115449666 -86878681 - L2 LINE L2 -5 3308 3272 2724 130 34 5 chr4 115450582 115450991 -86877356 - L1PA15 LINE L1 0 6165 5745 362 296 10 0 chr4 115453026 115453124 -86875223 - MIR SINE MIR -7 255 157 342 279 61 46 chr4 115456188 115456350 -86871997 + MIR SINE MIR 46 215 -47 326 211 32 21 chr4 115456492 115456587 -86871760 - MLT1J1 LTR MaLR -1 445 350 2257 119 0 3 chr4 115458136 115458439 -86869908 - AluSx SINE Alu -10 302 1 23 78 0 0 chr4 115459135 115459186 -86869161 + AT_rich Low_complexity Low_complexity 1 51 0 1996 176 0 0 chr4 115459825 115460132 -86868215 - AluJb SINE Alu -3 309 3 439 236 134 51 chr4 115460183 115460475 -86867872 - L1ME4a LINE L1 -36 6085 5770 197 307 27 0 chr4 115460723 115460798 -86867549 - MIR SINE MIR -2 260 184 22 0 0 0 chr4 115460897 115460919 -86867428 + AT_rich Low_complexity Low_complexity 1 22 0 194 175 75 0 chr4 115460994 115461034 -86867313 - MIR SINE MIR -102 160 118 401 301 121 18 chr4 115463927 115464151 -86864196 + MIR SINE MIR 2 251 -11 401 306 291 12 chr4 115464625 115464962 -86863385 + L3 LINE CR1 836 1266 -311 343 331 7 27 chr4 115464966 115465114 -86863233 - LTR67 LTR ERVL 0 557 413 2157 127 0 6 chr4 115465596 115465910 -86862437 - AluSx SINE Alu 0 312 1 183 333 14 0 chr4 115465952 115466021 -86862326 + L3 LINE CR1 1412 1481 -96 186 103 0 0 chr4 115466760 115466789 -86861558 + (GA)n Simple_repeat Simple_repeat 1 29 0 234 305 0 0 chr4 115466812 115466871 -86861476 + GA-rich Low_complexity Low_complexity 105 163 0 698 259 118 5 chr4 115467778 115467998 -86860349 - MIR SINE MIR 0 262 18 447 247 0 0 chr4 115468101 115468186 -86860161 - MIR3 SINE MIR -46 162 78 323 146 44 219 chr4 115468479 115468616 -86859731 - L2 LINE L2 0 3313 3201 1775 143 65 7 chr4 115469102 115469395 -86858952 - AluJb SINE Alu -2 310 1 570 287 143 60 chr4 115469541 115469987 -86858360 - MLT1K LTR MaLR 0 588 106 195 222 0 0 chr4 115470054 115470090 -86858257 - L2 LINE L2 -47 3266 3231 2063 111 7 0 chr4 115470135 115470437 -86857910 + AluSc SINE Alu 1 304 0 1248 175 135 22 chr4 115474046 115474320 -86854027 + AluJo SINE Alu 1 305 -7 262 211 53 26 chr4 115475853 115475929 -86852418 - MIR SINE MIR -96 166 89 551 265 73 45 chr4 115475980 115476225 -86852122 + MIR SINE MIR 11 262 0 202 253 38 51 chr4 115476241 115476320 -86852027 - MIR SINE MIR -104 158 81 837 146 0 35 chr4 115477517 115477661 -86850686 - L1PA16 LINE L1 0 6166 6028 256 33 0 0 chr4 115477677 115477707 -86850640 - L1PA16 LINE L1 -109 6057 6028 256 33 0 0 chr4 115477742 115477772 -86850575 - L1PA16 LINE L1 -109 6057 6028 256 33 0 0 chr4 115477811 115477841 -86850506 - L1PA16 LINE L1 -109 6057 6028 227 67 0 0 chr4 115477857 115477887 -86850460 - L1PA16 LINE L1 -109 6057 6028 775 129 143 7 chr4 115477949 115478096 -86850251 - L1PA16 LINE L1 -109 6057 5891 529 234 9 9 chr4 115478101 115478212 -86850135 + L2 LINE L2 3202 3312 -1 288 262 83 55 chr4 115478237 115478382 -86849965 + MIR SINE MIR 14 162 -100 645 285 53 23 chr4 115479399 115479662 -86848685 - MER102b DNA MER1_type -34 307 37 352 280 40 10 chr4 115479683 115479783 -86848564 - L2 LINE L2 -3 3310 3208 306 236 372 5 chr4 115480721 115480912 -86847435 + MIR SINE MIR 2 262 0 1682 201 109 17 chr4 115482012 115482371 -86845976 - MSTD LTR MaLR -4 392 1 2234 132 0 0 chr4 115482524 115482835 -86845512 + AluSx SINE Alu 1 311 -1 228 227 27 36 chr4 115482936 115483046 -86845301 + (TA)n Simple_repeat Simple_repeat 1 109 0 1228 273 108 17 chr4 115483497 115483977 -86844370 + L1MC4a LINE L1 5340 5863 -1945 25 31 0 0 chr4 115484247 115484279 -86844068 + AT_rich Low_complexity Low_complexity 1 32 0 211 338 138 19 chr4 115484351 115484511 -86843836 + L3b LINE CR1 1123 1301 -282 258 199 78 71 chr4 115485640 115485781 -86842566 - MER113 DNA MER1_type? -378 143 2 344 113 62 21 chr4 115486050 115486147 -86842200 + GA-rich Low_complexity Low_complexity 1 101 0 7009 191 184 42 chr4 115486492 115487325 -86841022 + L1MD1 LINE L1 18 731 -5809 2147 112 13 22 chr4 115487325 115487603 -86840744 + AluSx SINE Alu 1 277 -35 198 0 0 0 chr4 115487603 115487625 -86840722 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 2147 112 13 22 chr4 115487625 115487658 -86840689 + AluSx SINE Alu 277 309 -3 7009 191 184 42 chr4 115487658 115487962 -86840385 + L1MD1 LINE L1 731 990 -5550 189 0 0 0 chr4 115487962 115487983 -86840364 + (CAA)n Simple_repeat Simple_repeat 1 21 0 7009 191 184 42 chr4 115487983 115488837 -86839510 + L1MD1 LINE L1 990 2293 -4247 6639 206 58 31 chr4 115488880 115490764 -86837583 + L1MD1 LINE L1 3609 5440 -1196 2914 71 11 3 chr4 115490764 115491128 -86837219 + L1PA8 LINE L1 5805 6171 -1 6639 206 58 31 chr4 115491128 115491843 -86836504 + L1MD1 LINE L1 5440 6134 -502 2495 47 0 3 chr4 115491843 115492144 -86836203 + AluY SINE Alu 1 300 -11 185 0 0 39 chr4 115492148 115492174 -86836173 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6639 206 58 31 chr4 115492174 115492527 -86835820 + L1MD1 LINE L1 6136 6636 0 341 299 36 10 chr4 115493960 115494084 -86834263 - MIR SINE MIR -68 140 15 297 250 62 0 chr4 115494744 115494824 -86833523 - MIR SINE MIR -114 148 64 1214 297 50 12 chr4 115494944 115495459 -86832888 - L1ME4a LINE L1 -5 6116 5582 2460 217 49 46 chr4 115495718 115496309 -86832038 + MLT1E LTR MaLR 1 593 0 822 268 60 4 chr4 115496604 115496869 -86831478 + LTR33A LTR ERVL 221 500 -23 272 392 67 8 chr4 115497013 115497133 -86831214 - L2 LINE L2 -27 3245 3119 1004 180 0 0 chr4 115497249 115497410 -86830937 + AluJb SINE Alu 132 292 -20 300 212 71 115 chr4 115497775 115497888 -86830459 + MIR3 SINE MIR 15 122 -86 637 258 16 11 chr4 115497940 115498126 -86830221 - MIR SINE MIR -10 252 66 181 264 165 11 chr4 115498538 115498629 -86829718 - MIR SINE MIR -110 152 48 274 261 48 24 chr4 115498954 115499119 -86829228 + (CATA)n Simple_repeat Simple_repeat 1 169 0 425 197 45 39 chr4 115499127 115499305 -86829042 + (CA)n Simple_repeat Simple_repeat 2 180 0 231 285 28 28 chr4 115499479 115499623 -86828724 + (CA)n Simple_repeat Simple_repeat 1 144 0 361 202 46 29 chr4 115499716 115499889 -86828458 + (CA)n Simple_repeat Simple_repeat 2 177 0 348 294 72 33 chr4 115502055 115502208 -86826139 + MIR SINE MIR 58 216 -46 2166 71 21 11 chr4 115502424 115502707 -86825640 + AluY SINE Alu 22 307 -4 27 0 0 0 chr4 115502707 115502734 -86825613 + AT_rich Low_complexity Low_complexity 1 27 0 300 217 236 0 chr4 115503803 115503909 -86824438 - L1ME4a LINE L1 -4 6117 5987 1948 128 10 7 chr4 115504165 115504454 -86823893 - L1PA16 LINE L1 -1 6165 5876 22 99 0 0 chr4 115504627 115504698 -86823649 + AT_rich Low_complexity Low_complexity 1 71 0 219 36 0 0 chr4 115504781 115504809 -86823538 + (CA)n Simple_repeat Simple_repeat 1 28 0 660 245 31 41 chr4 115505260 115505456 -86822891 + MIR SINE MIR 21 214 -48 401 286 84 33 chr4 115505538 115505751 -86822596 - MARNA DNA Mariner -16 570 347 324 365 44 28 chr4 115506103 115506284 -86822063 + MIR3 SINE MIR 19 202 -6 194 216 0 0 chr4 115506321 115506358 -86821989 + MIR SINE MIR 71 107 -155 2622 169 5 25 chr4 115506358 115506789 -86821558 - MSTB LTR MaLR 0 426 5 8547 184 57 5 chr4 115506793 115508362 -86819985 - MSTB-int LTR MaLR 0 1651 1 2404 155 26 28 chr4 115508362 115508554 -86819793 - MSTB LTR MaLR 0 426 235 2184 125 71 34 chr4 115508554 115508905 -86819442 - THE1B LTR MaLR 0 364 1 2404 155 26 28 chr4 115508905 115509139 -86819208 - MSTB LTR MaLR -191 235 1 355 253 38 89 chr4 115509141 115509195 -86819152 + MIR SINE MIR 105 160 -102 302 80 20 0 chr4 115509195 115509245 -86819102 + (TA)n Simple_repeat Simple_repeat 1 51 0 355 253 38 89 chr4 115509245 115509348 -86818999 + MIR SINE MIR 160 254 -8 267 180 24 0 chr4 115510446 115510501 -86817846 + Alu SINE Alu 246 290 -10 6782 72 22 31 chr4 115510509 115512362 -86815985 + SVA Other Other 1 1433 0 376 292 80 7 chr4 115512369 115512506 -86815841 + L1MC3 LINE L1 51 197 -6226 806 238 168 8 chr4 115512977 115513068 -86815279 + L1MC3 LINE L1 4858 4933 -2008 559 13 0 39 chr4 115513068 115513146 -86815201 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 806 238 168 8 chr4 115513146 115513310 -86815037 + L1MC3 LINE L1 4933 5154 -1787 4981 198 46 2 chr4 115513336 115514244 -86814103 + L1MA5 LINE L1 3 933 -6235 12326 167 31 20 chr4 115514246 115516705 -86811642 + L1MA5 LINE L1 3397 5881 -1286 5761 158 21 14 chr4 115521550 115522991 -86805356 + L1MA5 LINE L1 5870 7319 -2 * 9413 190 64 65 chr4 115522989 115524913 -86803434 + L1MC3 LINE L1 5153 7077 -62 2065 122 154 16 chr4 115524913 115525289 -86803058 - MSTA LTR MaLR 0 428 1 1963 145 3 3 chr4 115525296 115525600 -86802747 - AluJb SINE Alu -4 308 5 9413 190 64 65 chr4 115525600 115526288 -86802059 + L1MC3 LINE L1 7083 7770 631 568 104 0 0 chr4 115526288 115526365 -86801982 + MADE1 DNA Mariner 4 80 0 9413 190 64 65 chr4 115526365 115526508 -86801839 + L1MC3 LINE L1 7770 6560 -579 259 264 23 23 chr4 115526508 115526595 -86801752 + MLT1F1 LTR MaLR 38 124 -443 9413 190 64 65 chr4 115526595 115527176 -86801171 + L1MC3 LINE L1 6559 7139 0 2511 65 0 0 chr4 115527331 115527641 -86800706 - AluY SINE Alu -1 310 1 242 262 107 39 chr4 115528289 115528392 -86799955 + MER91C DNA MER1_type 31 140 0 397 263 229 23 chr4 115528515 115528690 -86799657 - MIR SINE MIR -9 253 43 2425 75 0 0 chr4 115529106 115529401 -86798946 - AluY SINE Alu -16 295 1 346 313 36 9 chr4 115529871 115529983 -86798364 + L2 LINE L2 2225 2339 -975 1779 181 0 6 chr4 115530309 115530623 -86797724 - AluJo SINE Alu 0 312 1 1083 179 25 20 chr4 115530882 115531083 -86797264 + MER105 DNA DNA 3 204 0 237 132 0 0 chr4 115531223 115531261 -86797086 + (CA)n Simple_repeat Simple_repeat 2 39 0 1699 197 0 16 chr4 115532508 115532817 -86795530 + AluJo SINE Alu 1 304 -8 397 281 144 7 chr4 115534212 115534365 -86793982 + MIR SINE MIR 19 192 -70 540 244 0 8 chr4 115534709 115534840 -86793507 + L2 LINE L2 3184 3313 0 35 0 0 0 chr4 115534969 115535004 -86793343 + AT_rich Low_complexity Low_complexity 1 35 0 2167 48 4 0 chr4 115535004 115535255 -86793092 - L1PA5 LINE L1 -7 6147 5896 1318 176 113 41 chr4 115536379 115536697 -86791650 - MER2 DNA MER2_type -3 341 1 420 277 73 17 chr4 115536723 115536900 -86791447 + MIR3 SINE MIR 21 207 -1 274 218 151 45 chr4 115536901 115537015 -86791332 + MIR SINE MIR 32 157 -63 44018 47 2 4 chr4 115537149 115543318 -86785029 - L1PA4 LINE L1 0 6155 1 412 233 17 160 chr4 115543473 115543567 -86784780 + MIR3 SINE MIR 9 68 -140 2037 108 0 0 chr4 115543567 115543835 -86784512 + AluSx SINE Alu 40 307 -5 412 233 17 160 chr4 115543835 115543930 -86784417 + MIR3 SINE MIR 68 175 -33 440 262 139 56 chr4 115545312 115545686 -86782661 - MLT1K LTR MaLR -16 572 168 320 304 78 0 chr4 115545865 115545980 -86782367 - MIR3 SINE MIR 0 208 85 1352 171 83 23 chr4 115546269 115546533 -86781814 + AluJb SINE Alu 1 280 -32 189 0 0 0 chr4 115546533 115546554 -86781793 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 290 289 195 11 chr4 115546883 115547073 -86781274 + MIR SINE MIR 32 256 -6 190 328 34 34 chr4 115547617 115547736 -86780611 - L2 LINE L2 -979 2335 2217 347 209 61 61 chr4 115549576 115549691 -86778656 + L1ME4a LINE L1 5976 6090 -31 332 279 71 121 chr4 115549692 115549838 -86778509 - MIR SINE MIR -3 259 128 747 194 0 8 chr4 115549838 115549972 -86778375 - FLAM_C SINE Alu 0 133 1 332 279 71 121 chr4 115549972 115550065 -86778282 - MIR SINE MIR -134 128 32 821 205 0 0 chr4 115550077 115550204 -86778143 + FLAM_A SINE Alu 1 127 -6 315 0 0 0 chr4 115550253 115550288 -86778059 + (CA)n Simple_repeat Simple_repeat 2 36 0 347 102 17 0 chr4 115550402 115550414 -86777933 + (GAAA)n Simple_repeat Simple_repeat 3 13 -49 1932 139 33 3 chr4 115550414 115550716 -86777631 + AluJb SINE Alu 1 311 -1 347 102 17 0 chr4 115550716 115550762 -86777585 + (GAAA)n Simple_repeat Simple_repeat 13 62 0 232 314 12 12 chr4 115550959 115551045 -86777302 + L3b LINE CR1 1221 1306 -277 * 801 283 134 27 chr4 115551043 115551417 -86776930 + L3 LINE CR1 1054 1467 -110 449 278 62 28 chr4 115551850 115552026 -86776321 + MIR SINE MIR 81 262 0 2155 87 0 28 chr4 115552454 115552743 -86775604 - AluSg SINE Alu -25 285 5 4775 25 0 4 chr4 115553069 115553592 -86774755 - L1PA5 LINE L1 -6 6148 5628 449 245 117 97 chr4 115553638 115554263 -86774084 + L1ME3A LINE L1 5273 5947 -223 1352 211 86 0 chr4 115554488 115554848 -86773499 - Charlie5 DNA MER1_type 0 2624 2234 529 136 82 9 chr4 115554876 115554986 -86773361 - Charlie5 DNA MER1_type -2489 123 6 723 304 12 4 chr4 115557469 115557722 -86770625 + L1MC4 LINE L1 7241 7495 -547 832 271 78 50 chr4 115557786 115558322 -86770025 + L1MC4 LINE L1 7492 8042 0 392 314 157 7 chr4 115559119 115559272 -86769075 + L1MC4a LINE L1 5488 5663 -2145 1060 208 154 54 chr4 115559272 115559604 -86768743 + MLT1A1 LTR MaLR 1 365 0 537 281 60 20 chr4 115559656 115559905 -86768442 + L1MC4a LINE L1 5692 5950 -1858 512 195 16 97 chr4 115559962 115560117 -86768230 - LTR50 LTR ERVL -182 613 395 1976 189 18 20 chr4 115560117 115560514 -86767833 - MSTD LTR MaLR 0 396 1 512 195 16 97 chr4 115560514 115560554 -86767793 - LTR50 LTR ERVL -400 395 353 704 193 127 28 chr4 115560572 115560753 -86767594 - LTR50 LTR ERVL -596 199 1 1606 137 4 8 chr4 115560975 115561216 -86767131 - AluJb SINE Alu -15 297 58 1715 164 29 23 chr4 115562312 115562622 -86765725 + AluJb SINE Alu 1 312 0 678 270 143 17 chr4 115564712 115565005 -86763342 - MER102a DNA MER1_type 0 330 1 2958 166 25 59 chr4 115565073 115565926 -86762421 + LTR1 LTR ERV1 1 785 0 203 356 0 0 chr4 115565929 115565988 -86762359 + L3 LINE CR1 1508 1566 -11 1944 149 3 0 chr4 115566552 115566841 -86761506 - AluSx SINE Alu -22 290 1 293 253 0 36 chr4 115567296 115567379 -86760968 - L2 LINE L2 -57 3256 3177 248 296 148 28 chr4 115568288 115568430 -86759917 + L2 LINE L2 3155 3313 0 194 358 64 69 chr4 115569696 115569900 -86758447 - MIR3 SINE MIR -2 206 4 5668 227 44 28 chr4 115570103 115571119 -86757228 + L1M4 LINE L1 3359 4418 -1728 1994 164 3 0 chr4 115571119 115571430 -86756917 + AluJb SINE Alu 1 312 0 5668 227 44 28 chr4 115571430 115572186 -86756161 + L1M4 LINE L1 4418 5160 -986 7004 111 9 0 chr4 115572286 115574126 -86754221 + L1PA10 LINE L1 4310 6157 -11 413 377 30 9 chr4 115574300 115574529 -86753818 + MIR SINE MIR 30 261 -1 1018 252 7 5 chr4 115575207 115575456 -86752891 - MLT1H LTR MaLR -327 222 1 1759 171 7 10 chr4 115575471 115575764 -86752583 - AluJb SINE Alu -20 292 1 1463 276 40 29 chr4 115575803 115576281 -86752066 - LTR16C LTR ERVL 0 491 9 208 264 264 25 chr4 115576382 115576503 -86751844 + MIR SINE MIR 92 241 -21 1786 243 10 6 chr4 115576709 115577227 -86751120 + L1M4 LINE L1 2639 3158 -2988 24 0 0 0 chr4 115578115 115578139 -86750208 + AT_rich Low_complexity Low_complexity 1 24 0 304 315 40 36 chr4 115578471 115578693 -86749654 + L1MC4a LINE L1 5644 5866 -1942 27 29 0 0 chr4 115578693 115578727 -86749620 + AT_rich Low_complexity Low_complexity 1 34 0 1683 161 46 23 chr4 115578844 115579149 -86749198 + AluSx SINE Alu 1 312 0 237 33 0 0 chr4 115579654 115579684 -86748663 + (CAT)n Simple_repeat Simple_repeat 3 32 0 201 147 0 0 chr4 115580335 115580369 -86747978 + (TC)n Simple_repeat Simple_repeat 2 35 0 406 257 0 0 chr4 115580604 115580705 -86747642 + LTR53 LTR ERVL 270 370 -149 481 290 113 39 chr4 115582511 115582742 -86745605 + MIR SINE MIR 15 262 0 441 329 77 30 chr4 115583191 115583425 -86744922 + MIR SINE MIR 18 262 0 2365 100 0 0 chr4 115583638 115583947 -86744400 + AluSg SINE Alu 1 309 -1 501 325 30 0 chr4 115584276 115584442 -86743905 - MIR3 SINE MIR -4 204 34 23 0 0 0 chr4 115584528 115584551 -86743796 + AT_rich Low_complexity Low_complexity 1 23 0 209 282 40 0 chr4 115584759 115584839 -86743508 + MIR SINE MIR 22 108 -100 23093 83 13 3 chr4 115584997 115589201 -86739146 + L1PA7 LINE L1 1908 6154 0 300 214 0 0 chr4 115589442 115589498 -86738849 + L1MC4 LINE L1 6648 6703 -1339 2739 86 0 0 chr4 115589499 115589880 -86738467 + L1PB1 LINE L1 5784 6164 0 333 336 18 24 chr4 115590249 115590420 -86737927 - MER5B DNA MER1_type 0 178 22 2791 199 39 2 chr4 115590498 115591041 -86737306 + MLT1F1 LTR MaLR 1 563 -4 22 56 0 0 chr4 115593244 115593280 -86735067 + AT_rich Low_complexity Low_complexity 1 36 0 1645 125 61 79 chr4 115593750 115594093 -86734254 - MER1B DNA MER1_type 0 337 1 793 207 207 0 chr4 115594558 115594857 -86733490 - MER69 DNA AcHobo 0 2526 2166 737 234 78 47 chr4 115596121 115596378 -86731969 - L2 LINE L2 0 3313 3049 303 160 0 0 chr4 115596611 115596661 -86731686 - L2 LINE L2 0 3313 3264 387 285 74 48 chr4 115596669 115597080 -86731267 - MLT1K LTR MaLR 0 588 137 192 40 0 0 chr4 115598036 115598061 -86730286 + (A)n Simple_repeat Simple_repeat 1 25 0 493 312 29 0 chr4 115598562 115598732 -86729615 - MIR SINE MIR -16 246 72 10770 64 0 6 chr4 115598772 115600215 -86728132 + L1P LINE L1 2 1435 -4711 5478 143 26 48 chr4 115600315 115601043 -86727304 + L1MC1 LINE L1 5231 5928 -405 1991 124 0 0 chr4 115601043 115601347 -86727000 - AluSx SINE Alu 0 314 11 5478 143 26 48 chr4 115601347 115601726 -86726621 + L1MC1 LINE L1 5928 6314 -19 2774 93 3 3 chr4 115602800 115603175 -86725172 + THE1C LTR MaLR 1 375 0 2429 161 29 5 chr4 115603252 115603668 -86724679 + MSTB LTR MaLR 1 426 0 21 36 0 0 chr4 115603957 115603985 -86724362 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 115604525 115604546 -86723801 + AT_rich Low_complexity Low_complexity 1 21 0 756 190 33 87 chr4 115604754 115604881 -86723466 - MER5B DNA MER1_type 0 178 62 2328 66 10 13 chr4 115604881 115605186 -86723161 - AluSg1 SINE Alu -5 304 1 756 190 33 87 chr4 115605186 115605242 -86723105 - MER5B DNA MER1_type -116 62 5 321 82 0 0 chr4 115605657 115605706 -86722641 + (CA)n Simple_repeat Simple_repeat 2 50 0 238 356 47 0 chr4 115606675 115606866 -86721481 + L1M4 LINE L1 4773 4972 -1174 274 387 108 0 chr4 115607627 115607738 -86720609 - L2 LINE L2 -16 3256 3134 198 71 0 0 chr4 115608767 115608795 -86719552 + (TG)n Simple_repeat Simple_repeat 2 29 0 339 204 80 11 chr4 115609047 115609135 -86719212 - MLT1K LTR MaLR -7 581 488 561 342 39 42 chr4 115609200 115609536 -86718811 - MLT1K LTR MaLR -236 352 18 277 302 21 10 chr4 115610946 115611042 -86717305 - MLT1L LTR MaLR -160 455 359 324 212 111 10 chr4 115611514 115611613 -86716734 + L1ME4a LINE L1 5956 6064 -57 23 54 0 0 chr4 115611761 115611798 -86716549 + AT_rich Low_complexity Low_complexity 1 37 0 885 250 95 8 chr4 115612137 115612400 -86715947 - MLT1A1 LTR MaLR -12 353 68 1620 156 52 18 chr4 115612400 115612526 -86715821 + MER44D DNA MER2_type 1 121 -2370 9399 195 64 70 chr4 115612526 115613710 -86714637 + Tigger2 DNA MER2_type 2 1192 -1526 219 36 0 0 chr4 115613710 115613738 -86714609 + (CAA)n Simple_repeat Simple_repeat 1 28 0 9399 195 64 70 chr4 115613738 115615287 -86713060 + Tigger2 DNA MER2_type 1192 2718 0 1620 156 52 18 chr4 115615287 115615488 -86712859 + MER44D DNA MER2_type 121 609 0 285 197 0 79 chr4 115615488 115615564 -86712783 - MLT1A1 LTR MaLR -304 70 1 2604 265 67 20 chr4 115616112 115616946 -86711401 + L2 LINE L2 2006 2878 -436 1020 180 73 31 chr4 115616948 115617209 -86711138 - ORSL DNA AcHobo -1 274 3 373 283 19 19 chr4 115618424 115618530 -86709817 - MER5B DNA MER1_type -1 177 72 21 0 0 0 chr4 115619422 115619443 -86708904 + AT_rich Low_complexity Low_complexity 1 21 0 276 257 285 56 chr4 115620120 115620264 -86708083 + MIR3 SINE MIR 1 177 -31 459 223 11 0 chr4 115620542 115620636 -86707711 + FLAM_A SINE Alu 1 95 -47 215 200 44 0 chr4 115621403 115621448 -86706899 + CT-rich Low_complexity Low_complexity 4 50 0 215 308 0 31 chr4 115621731 115621796 -86706551 - MIR SINE MIR -157 105 43 1239 228 4 0 chr4 115622006 115622278 -86706069 + LTR53 LTR ERVL 189 461 -58 388 326 93 12 chr4 115622867 115623039 -86705308 + MIR SINE MIR 52 237 -25 1327 135 49 146 chr4 115623638 115623886 -86704461 - MER7A DNA MER2_type -2692 346 148 2303 108 116 13 chr4 115623886 115624012 -86704335 - MSTA LTR MaLR 0 428 316 2405 72 0 16 chr4 115624012 115624319 -86704028 - AluY SINE Alu -9 302 1 2303 108 116 13 chr4 115624319 115624580 -86703767 - MSTA LTR MaLR -112 316 1 1327 135 49 146 chr4 115624580 115624716 -86703631 - MER7A DNA MER2_type -2890 148 1 265 132 0 4 chr4 115626619 115626663 -86701684 - MLT2B1 LTR ERVL 0 554 511 484 15 31 0 chr4 115626663 115626728 -86701619 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 1670 178 36 42 chr4 115626745 115627105 -86701242 - MLT2B1 LTR ERVL -159 361 4 2025 138 3 3 chr4 115627110 115627401 -86700946 + AluSq SINE Alu 6 296 -17 430 296 99 6 chr4 115627457 115627629 -86700718 + MLT1J2 LTR MaLR 263 450 0 1522 265 35 49 chr4 115628633 115629207 -86699140 + L1M3e LINE L1 466 1031 -6458 12564 203 29 24 chr4 115629230 115633622 -86694725 + L1M3e LINE L1 1897 6312 -1253 817 154 0 0 chr4 115733622 115733745 -86594602 - AluSq/x SINE Alu -189 123 1 1462 132 0 0 chr4 115733745 115733950 -86594397 + AluSg/x SINE Alu 103 307 -5 1654 36 0 0 chr4 115734345 115734540 -86593807 + L1PA5 LINE L1 5952 6146 -8 21 36 0 0 chr4 115734540 115734568 -86593779 + AT_rich Low_complexity Low_complexity 1 28 0 299 70 0 0 chr4 115734614 115734657 -86593690 + Alu SINE Alu 1 43 -259 1683 120 0 8 chr4 115735058 115735299 -86593048 + AluSx SINE Alu 60 298 -14 1410 222 98 15 chr4 115735304 115735827 -86592520 + HAL1 LINE L1 991 1556 -951 1043 216 32 20 chr4 115735831 115736081 -86592266 - AluSc SINE Alu -19 290 38 2148 90 7 17 chr4 115736440 115736769 -86591578 + AluSq SINE Alu 1 326 0 231 36 0 0 chr4 115736774 115736802 -86591545 + Alu SINE Alu 84 111 -188 306 74 0 19 chr4 115736803 115736857 -86591490 + Alu SINE Alu 247 299 -1 301 235 242 14 chr4 115736877 115737071 -86591276 + MIR SINE MIR 27 262 0 199 147 29 0 chr4 115737141 115737175 -86591172 + MIR SINE MIR 217 251 -11 1139 136 27 0 chr4 115737480 115737664 -86590683 + Tigger3(Golem) DNA MER2_type 2840 3028 -1 969 226 27 119 chr4 115737897 115738309 -86590038 - L2 LINE L2 0 3313 2940 327 279 114 38 chr4 115738510 115738668 -86589679 + L1M4 LINE L1 4026 4195 -1951 367 328 49 11 chr4 115738687 115738870 -86589477 + L1M4 LINE L1 4251 4440 -1706 309 273 67 39 chr4 115738911 115739193 -86589154 + L1M4 LINE L1 4509 4798 -1348 229 269 8 17 chr4 115739328 115739447 -86588900 + L1ME LINE L1 811 928 -5142 2092 108 0 52 chr4 115739586 115739910 -86588437 + AluY SINE Alu 1 307 -4 309 269 21 0 chr4 115739913 115740006 -86588341 + MLT1G1 LTR MaLR 100 194 -401 1158 81 13 0 chr4 115740133 115740282 -86588065 + AluSg/x SINE Alu 154 304 -8 409 340 0 0 chr4 115742079 115742182 -86586165 - MIR SINE MIR -80 128 26 183 234 0 21 chr4 115742451 115742498 -86585849 + L3b LINE CR1 1140 1185 -398 2169 89 0 0 chr4 115742781 115743051 -86585296 + AluSg SINE Alu 1 270 -40 188 0 74 0 chr4 115743066 115743093 -86585254 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 266 330 0 68 chr4 115743328 115743416 -86584931 - MIR SINE MIR -86 122 41 1847 170 50 84 chr4 115743499 115744022 -86584325 + MLT1D LTR MaLR 1 505 0 2683 106 0 10 chr4 115744106 115744512 -86583835 - L1PB1 LINE L1 -8 6143 5742 372 59 0 0 chr4 115744537 115744588 -86583759 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1582 157 103 0 chr4 115744589 115744851 -86583496 - AluJb SINE Alu -23 289 1 461 324 147 31 chr4 115745053 115745476 -86582871 - L2 LINE L2 -458 2856 2385 1948 92 53 18 chr4 115746609 115746891 -86581456 - AluSg SINE Alu -18 292 1 2231 149 52 0 chr4 115746899 115747282 -86581065 - L1MC1 LINE L1 -18 6315 5913 486 292 151 22 chr4 115747691 115748136 -86580211 - L1ME4a LINE L1 -178 5943 5442 1749 188 0 7 chr4 115748299 115748597 -86579750 - AluJo SINE Alu -16 296 1 676 263 80 42 chr4 115748617 115749087 -86579260 - MLT1L LTR MaLR -9 606 87 218 306 0 14 chr4 115749285 115749357 -86578990 - L2 LINE L2 -19 3253 3183 2272 97 0 0 chr4 115749450 115749739 -86578608 + AluSg SINE Alu 3 291 -19 753 279 40 40 chr4 115749742 115749989 -86578358 - MIR SINE MIR -8 254 8 186 297 54 40 chr4 115749930 115750004 -86578343 - MER5B DNA MER1_type -101 77 3 * 530 283 82 0 chr4 115750102 115750261 -86578086 - MIR SINE MIR -5 257 86 1633 85 0 0 chr4 115750600 115750801 -86577546 - AluSq SINE Alu -112 201 1 383 200 11 103 chr4 115750806 115750912 -86577435 - Charlie5 DNA MER1_type -2034 590 505 1472 44 17 0 chr4 115750912 115751120 -86577227 + L1PA3 LINE L1 5955 6165 0 383 200 11 103 chr4 115751120 115751197 -86577150 - Charlie5 DNA MER1_type -2119 505 423 653 205 80 0 chr4 115751199 115751399 -86576948 + L1MDa LINE L1 1935 2150 -4390 1266 200 12 4 chr4 115751399 115751654 -86576693 - MLT1D LTR MaLR -3 502 246 294 29 0 0 chr4 115751723 115751758 -86576589 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 582 167 0 0 chr4 115751768 115751864 -86576483 - FLAM_A SINE Alu -27 115 20 427 246 25 79 chr4 115751874 115752077 -86576270 - MLT1D LTR MaLR -313 192 1 958 193 72 35 chr4 115752164 115752454 -86575893 + L1MD2 LINE L1 5849 6149 -210 354 174 12 23 chr4 115752487 115752573 -86575774 + L1MD2 LINE L1 6132 6216 -143 1033 178 7 185 chr4 115752710 115752849 -86575498 + L1MD2 LINE L1 5995 6157 -202 2193 105 3 0 chr4 115752849 115753144 -86575203 + AluSx SINE Alu 1 296 -16 1033 178 7 185 chr4 115753144 115753447 -86574900 + L1MD2 LINE L1 6157 6358 -1 1470 171 43 11 chr4 115753449 115753801 -86574546 + L1MDa LINE L1 2235 2597 -3943 858 199 38 110 chr4 115753804 115754231 -86574116 - Charlie5 DNA MER1_type -2183 429 34 22 0 0 0 chr4 115754274 115754296 -86574051 + AT_rich Low_complexity Low_complexity 1 22 0 473 280 21 53 chr4 115754362 115754551 -86573796 - MLT1I LTR MaLR -222 187 5 2171 113 3 13 chr4 115754637 115754938 -86573409 - AluSp SINE Alu -15 298 1 181 254 48 0 chr4 115754957 115755020 -86573327 - MIR SINE MIR 0 262 197 952 145 66 6 chr4 115755021 115755187 -86573160 - AluSq SINE Alu -15 298 123 379 283 0 28 chr4 115755259 115755365 -86572982 - MIR SINE MIR -158 104 2 539 180 14 43 chr4 115755722 115755861 -86572486 - HAL1 LINE L1 -746 1761 1627 2195 127 0 3 chr4 115755886 115756186 -86572161 + AluSp SINE Alu 1 299 -14 761 88 10 0 chr4 115756200 115756302 -86572045 + AluSq/x SINE Alu 3 105 -208 1334 152 73 35 chr4 115756410 115756473 -86571874 + Charlie5 DNA MER1_type 1583 1642 -982 2177 78 0 41 chr4 115756473 115756797 -86571550 - AluY SINE Alu 0 312 1 1334 152 73 35 chr4 115756797 115757048 -86571299 + Charlie5 DNA MER1_type 1642 1910 -714 1960 142 10 10 chr4 115757048 115757344 -86571003 - AluJb SINE Alu -16 296 1 381 118 59 0 chr4 115757357 115757425 -86570922 + Charlie5 DNA MER1_type 2553 2624 0 337 288 174 14 chr4 115757454 115757878 -86570469 - L1P LINE L1 -914 5232 4741 292 136 34 17 chr4 115759170 115759229 -86569118 + LTR67 LTR ERVL 490 549 -8 2185 123 0 0 chr4 115759802 115760103 -86568244 - AluSx SINE Alu -11 301 1 192 190 112 129 chr4 115760198 115760314 -86568033 + L2 LINE L2 3159 3272 0 204 271 123 57 chr4 115760417 115760539 -86567808 - L2 LINE L2 -5 3267 3138 206 353 48 48 chr4 115760811 115760997 -86567350 - L2 LINE L2 -456 2858 2673 504 251 147 6 chr4 115760997 115761160 -86567187 + MER5A DNA MER1_type 4 189 0 24 0 0 0 chr4 115761995 115762019 -86566328 + AT_rich Low_complexity Low_complexity 1 24 0 352 328 123 0 chr4 115763005 115763200 -86565147 - MIR SINE MIR -13 249 31 471 234 56 0 chr4 115763791 115763898 -86564449 - MIR SINE MIR -148 114 2 485 223 72 7 chr4 115765186 115765325 -86563022 - MIR SINE MIR -18 244 97 231 61 0 0 chr4 115766031 115766064 -86562283 + (A)n Simple_repeat Simple_repeat 1 33 0 761 188 170 128 chr4 115766524 115766558 -86561789 + MLT1J2 LTR MaLR 1 32 -418 2231 70 0 43 chr4 115766558 115766901 -86561446 - AluY SINE Alu 0 311 1 761 188 170 128 chr4 115766901 115767296 -86561051 + MLT1J2 LTR MaLR 32 448 -2 2233 115 3 10 chr4 115767590 115767903 -86560444 - AluSx SINE Alu 0 312 2 2024 145 0 7 chr4 115768039 115768342 -86560005 - AluSx SINE Alu -11 301 1 2245 102 0 29 chr4 115768505 115768819 -86559528 - AluSx SINE Alu -7 305 1 2167 110 7 3 chr4 115769569 115769868 -86558479 - AluSq SINE Alu -13 300 1 2181 122 0 0 chr4 115769897 115770208 -86558139 - AluSx SINE Alu 0 311 1 2250 122 0 0 chr4 115770612 115770915 -86557432 - AluSx SINE Alu -9 303 1 318 198 121 11 chr4 115771303 115771314 -86557033 + L1MC4 LINE L1 6603 6611 -1431 216 0 0 0 chr4 115771314 115771338 -86557009 + (TC)n Simple_repeat Simple_repeat 2 25 0 318 198 121 11 chr4 115771338 115771417 -86556930 + L1MC4 LINE L1 6611 6703 -1339 22 0 0 0 chr4 115771626 115771648 -86556699 + AT_rich Low_complexity Low_complexity 1 22 0 586 213 59 7 chr4 115772975 115773111 -86555236 - MIR3 SINE MIR -6 202 60 2169 97 3 10 chr4 115773205 115773504 -86554843 - AluSx SINE Alu -15 297 1 359 62 0 0 chr4 115773841 115773889 -86554458 + AluSc SINE Alu 161 208 -91 13154 175 25 41 chr4 115773989 115775922 -86552425 + L1MA4A LINE L1 2559 4521 -2484 1707 163 0 19 chr4 115775922 115776223 -86552124 + AluJo SINE Alu 17 312 0 13154 175 25 41 chr4 115776223 115777819 -86550528 + L1MA4A LINE L1 4521 6081 -924 2188 87 14 0 chr4 115777819 115778105 -86550242 + AluSc SINE Alu 1 290 -19 13154 175 25 41 chr4 115778105 115778991 -86549356 + L1MA4A LINE L1 6081 6980 -25 330 262 111 36 chr4 115778997 115779249 -86549098 + HAL1 LINE L1 1735 2005 -502 715 197 84 102 chr4 115779288 115779760 -86548587 - MER31B LTR ERV1 -3 511 1 196 125 0 42 chr4 115779770 115779818 -86548529 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 1415 178 50 36 chr4 115779827 115780108 -86548239 - AluJo SINE Alu -4 308 24 4174 104 3 11 chr4 115780201 115780816 -86547531 + MER4B LTR ERV1 1 610 0 1615 304 147 13 chr4 115781320 115782149 -86546198 - L2 LINE L2 -583 2731 1792 934 162 118 25 chr4 115782220 115782424 -86545923 - MSTD LTR MaLR -173 223 1 323 307 201 50 chr4 115783315 115783499 -86544848 + L2 LINE L2 2924 3079 -234 479 251 41 6 chr4 115783499 115783670 -86544677 + MER104 DNA MER2_type 1 177 -3 323 307 201 50 chr4 115783670 115783824 -86544523 + L2 LINE L2 3079 3313 0 845 125 0 29 chr4 115783840 115783976 -86544371 - FLAM_C SINE Alu -1 132 1 2244 98 19 19 chr4 115784134 115784441 -86543906 - AluSx SINE Alu -5 307 1 328 303 6 56 chr4 115785921 115786089 -86542258 + MIR SINE MIR 37 187 -63 2234 114 3 0 chr4 115787783 115788080 -86540267 + AluSq SINE Alu 1 298 -15 1256 125 55 166 chr4 115788091 115788208 -86540139 + AluJo SINE Alu 1 129 -183 1336 77 0 0 chr4 115788208 115788389 -86539958 + L1PA8 LINE L1 5992 6172 0 1256 125 55 166 chr4 115788389 115788409 -86539938 + AluJo SINE Alu 129 150 -162 2126 122 0 7 chr4 115788409 115788704 -86539643 + AluSx SINE Alu 1 293 -19 1256 125 55 166 chr4 115788704 115788908 -86539439 + AluJo SINE Alu 150 305 -7 772 316 89 30 chr4 115788957 115789173 -86539174 - HAL1 LINE L1 -1575 932 730 2301 105 3 10 chr4 115789173 115789487 -86538860 + AluSx SINE Alu 1 312 0 772 316 89 30 chr4 115789487 115789729 -86538618 - HAL1 LINE L1 -1777 730 447 301 254 0 0 chr4 115789860 115789927 -86538420 - HAL1 LINE L1 -2324 183 117 366 23 0 0 chr4 115789939 115789982 -86538365 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 1086 48 54 0 chr4 115789982 115790149 -86538198 + CT-rich Low_complexity Low_complexity 1 176 0 2059 118 50 0 chr4 115790151 115790541 -86537806 - AluSx SINE Alu 0 405 1 250 276 43 49 chr4 115790553 115790716 -86537631 - HAL1 LINE L1 -2342 165 4 266 73 24 0 chr4 115791382 115791423 -86536924 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 335 327 133 76 chr4 115791423 115791738 -86536609 - L2 LINE L2 -16 3256 2924 2036 119 0 44 chr4 115793534 115793858 -86534489 - AluSx SINE Alu 0 315 5 816 241 16 27 chr4 115793877 115794090 -86534257 - MIR SINE MIR -44 218 7 21 57 0 0 chr4 115794407 115794442 -86533905 + AT_rich Low_complexity Low_complexity 1 35 0 1363 157 9 4 chr4 115795330 115795559 -86532788 + MER30 DNA MER1_type 1 230 0 2236 114 0 0 chr4 115795911 115796200 -86532147 + AluSx SINE Alu 1 289 -23 1762 170 49 7 chr4 115796347 115796635 -86531712 - AluSx SINE Alu -12 300 1 1778 187 35 3 chr4 115796635 115797073 -86531274 + MLT2B1 LTR ERVL 3 504 -11 456 252 55 24 chr4 115797080 115797207 -86531140 + MLT1G3 LTR MaLR 367 497 -33 1971 128 0 42 chr4 115797394 115797700 -86530647 - AluSx SINE Alu -19 293 1 246 291 54 14 chr4 115797854 115798002 -86530345 - L1M4 LINE L1 -950 5196 5043 361 278 21 28 chr4 115798022 115798166 -86530181 - L1M4 LINE L1 -1143 5003 4861 1497 171 35 49 chr4 115798187 115798496 -86529851 - AluJo SINE Alu 0 305 1 270 253 0 25 chr4 115799355 115799434 -86528913 - Charlie4 DNA MER1_type -1 1960 1884 437 313 154 0 chr4 115799535 115799743 -86528604 - MIR SINE MIR -5 257 18 217 286 42 76 chr4 115799759 115799878 -86528469 - MIR SINE MIR -128 134 20 327 282 218 16 chr4 115801056 115801244 -86527103 - MIR SINE MIR -17 245 20 2095 124 7 3 chr4 115802673 115802980 -86525367 + AluSp SINE Alu 1 308 -5 2006 135 11 0 chr4 115803046 115803328 -86525019 - AluY SINE Alu -26 285 1 211 304 101 0 chr4 115803518 115803597 -86524750 - L2 LINE L2 -237 3035 2949 307 329 48 27 chr4 115803701 115803869 -86524478 - MER5B DNA MER1_type -3 175 9 214 266 228 0 chr4 115804234 115804313 -86524034 - MIR SINE MIR -146 116 20 2145 112 6 10 chr4 115804993 115805307 -86523040 - AluSp SINE Alu 0 313 1 1379 159 55 8 chr4 115805783 115806040 -86522307 - AluJb SINE Alu -31 281 13 2068 116 41 0 chr4 115806070 115806362 -86521985 - AluSq SINE Alu -9 304 1 2163 113 0 0 chr4 115806581 115806873 -86521474 + AluY SINE Alu 1 292 -19 586 169 15 52 chr4 115806886 115807022 -86521325 + FLAM_A SINE Alu 1 131 -2 230 207 0 22 chr4 115807127 115807186 -86521161 - MIR SINE MIR -103 105 50 2171 92 20 3 chr4 115807204 115807496 -86520851 + AluSx SINE Alu 2 298 -14 218 191 206 0 chr4 115807553 115807616 -86520731 - MIR SINE MIR -74 188 113 427 271 156 50 chr4 115808382 115808459 -86519888 - L1ME4a LINE L1 -34 6087 6020 2041 106 18 0 chr4 115808459 115808741 -86519606 - AluSx SINE Alu -25 287 1 427 271 156 50 chr4 115808741 115809002 -86519345 - L1ME4a LINE L1 -101 6020 5713 731 232 89 5 chr4 115809660 115809850 -86518497 - MER63A DNA MER1_type -3 207 2 2439 73 3 0 chr4 115810180 115810480 -86517867 + AluY SINE Alu 1 301 -10 1126 225 132 9 chr4 115810509 115810842 -86517505 - MLT1A2 LTR MaLR 0 374 1 466 308 96 53 chr4 115811020 115811397 -86516950 - L2 LINE L2 0 3313 2921 819 198 6 18 chr4 115811916 115812083 -86516264 - MER58A DNA MER1_type 0 168 4 349 242 87 60 chr4 115812105 115812280 -86516067 + MLT1H LTR MaLR 382 567 0 806 211 64 64 chr4 115812291 115812536 -86515811 - Charlie2 DNA MER1_type 0 2862 2618 2582 68 31 3 chr4 115812536 115812888 -86515459 - L1PA13 LINE L1 -2 6161 5800 806 211 64 64 chr4 115812888 115812944 -86515403 - Charlie2 DNA MER1_type -244 2618 2563 1537 185 3 70 chr4 115812944 115813273 -86515074 - AluJo SINE Alu 0 312 6 806 211 64 64 chr4 115813273 115813363 -86514984 - Charlie2 DNA MER1_type -298 2564 2470 2323 92 0 22 chr4 115813387 115813701 -86514646 - AluSx SINE Alu -5 307 1 548 207 82 53 chr4 115813751 115813959 -86514388 - Charlie2b DNA MER1_type -2113 669 456 585 239 73 143 chr4 115814066 115814254 -86514093 - L2 LINE L2 -34 3279 3136 2383 56 0 7 chr4 115814254 115814556 -86513791 + AluY SINE Alu 2 301 -10 585 239 73 143 chr4 115814556 115814794 -86513553 - L2 LINE L2 -177 3136 2883 419 314 72 0 chr4 115814846 115814999 -86513348 + MER115 DNA AcHobo 1 164 -529 311 342 22 22 chr4 115815365 115815549 -86512798 - MER5A DNA MER1_type 0 189 6 413 298 63 34 chr4 115815566 115815783 -86512564 + MIR SINE MIR 26 247 -15 2587 50 0 0 chr4 115816557 115816857 -86511490 - AluY SINE Alu -11 300 1 527 312 161 0 chr4 115818039 115818244 -86510103 + MIR SINE MIR 19 256 -6 212 153 17 136 chr4 115818632 115818691 -86509656 - L2 LINE L2 -4 3268 3217 192 40 0 0 chr4 115819005 115819030 -86509317 + (TG)n Simple_repeat Simple_repeat 1 25 0 180 259 65 46 chr4 115819139 115819247 -86509100 + L2 LINE L2 2188 2297 -1017 2147 111 0 0 chr4 115819653 115819950 -86508397 + AluSc SINE Alu 5 301 -8 205 309 0 86 chr4 115819974 115820113 -86508234 + L2 LINE L2 2558 2684 -630 196 287 116 8 chr4 115820283 115820412 -86507935 + L2 LINE L2 2917 3059 -213 2151 114 3 20 chr4 115820426 115820732 -86507615 - AluSx SINE Alu -11 301 1 206 262 119 71 chr4 115820836 115820962 -86507385 + L2 LINE L2 3182 3313 0 1841 149 24 0 chr4 115821004 115821299 -86507048 - AluSq SINE Alu -11 302 1 335 203 51 0 chr4 115821710 115821789 -86506558 - L2 LINE L2 0 3272 3190 257 271 101 48 chr4 115822016 115822240 -86506107 - L1ME4a LINE L1 -2 6119 5867 2008 142 0 14 chr4 115822240 115822535 -86505812 + AluJb SINE Alu 1 291 -21 257 271 101 48 chr4 115822535 115822668 -86505679 - L1ME4a LINE L1 -254 5867 5743 483 200 10 10 chr4 115822745 115822845 -86505502 - MLT2F LTR ERVL -563 100 1 2261 112 3 0 chr4 115822903 115823199 -86505148 - AluSx SINE Alu -15 297 1 2242 106 0 29 chr4 115823207 115823518 -86504829 - AluSp SINE Alu -11 302 1 2348 235 20 2 chr4 115823783 115824328 -86504019 - ERVL-F LTR ERVL -331 5433 4879 7569 246 89 32 chr4 115824410 115826863 -86501484 - ERVL-F LTR ERVL -1016 4748 2156 1891 125 34 14 chr4 115826999 115827320 -86501027 - AluSq SINE Alu 0 313 1 45 34 0 0 chr4 115828283 115828342 -86500005 + AT_rich Low_complexity Low_complexity 1 59 0 360 294 71 0 chr4 115828522 115828648 -86499699 + MIR SINE MIR 120 254 -8 653 306 87 33 chr4 115829375 115829708 -86498639 - L2 LINE L2 -704 2610 2260 24 67 0 0 chr4 115831706 115831751 -86496596 + AT_rich Low_complexity Low_complexity 1 45 0 855 65 0 0 chr4 115831766 115831873 -86496474 + U6 snRNA snRNA 1 107 0 349 259 107 0 chr4 115832211 115832323 -86496024 - L2 LINE L2 -10 3303 3180 2012 131 3 3 chr4 115832373 115832671 -86495676 + AluJb SINE Alu 1 298 -14 921 136 0 94 chr4 115832675 115832866 -86495481 + AluJb SINE Alu 130 302 -10 834 294 133 83 chr4 115833032 115834344 -86494003 - L2 LINE L2 -656 2658 1282 2208 98 3 7 chr4 115834800 115835095 -86493252 + AluSx SINE Alu 1 294 -18 537 248 27 0 chr4 115835585 115835734 -86492613 + MER58B DNA MER1_type 178 330 -11 1774 84 130 0 chr4 115836447 115836708 -86491639 + AluY SINE Alu 1 295 -6 611 205 16 33 chr4 115836806 115836928 -86491419 + L2 LINE L2 3194 3313 0 2281 121 0 3 chr4 115837544 115837858 -86490489 - AluSq SINE Alu 0 313 1 309 51 0 0 chr4 115838052 115838091 -86490256 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr4 115838318 115838346 -86490001 + AT_rich Low_complexity Low_complexity 1 28 0 2088 86 9 98 chr4 115838604 115838942 -86489405 - AluSq SINE Alu -5 308 1 2147 86 0 4 chr4 115839165 115839462 -86488885 + AluY SINE Alu 14 309 0 2187 132 0 3 chr4 115840600 115840910 -86487437 + AluSx SINE Alu 1 309 -3 2293 106 6 3 chr4 115841252 115841563 -86486784 - AluSx SINE Alu 0 312 1 21 0 0 0 chr4 115841575 115841596 -86486751 + AT_rich Low_complexity Low_complexity 1 21 0 408 285 45 18 chr4 115842557 115842741 -86485606 + MIR SINE MIR 4 192 -62 2164 99 27 0 chr4 115842874 115843167 -86485180 - AluY SINE Alu -10 301 1 371 329 43 23 chr4 115843227 115843425 -86484922 + MIR SINE MIR 20 215 -47 180 182 73 73 chr4 115843446 115843501 -86484846 + L2 LINE L2 3215 3269 -3 2252 102 0 7 chr4 115844250 115844553 -86483794 - AluSc SINE Alu -8 301 1 199 147 29 0 chr4 115844789 115844823 -86483524 - MIR SINE MIR -11 251 217 304 232 242 14 chr4 115844893 115845087 -86483260 - MIR SINE MIR 0 262 27 340 74 0 0 chr4 115845108 115845162 -86483185 - Alu SINE Alu 0 302 249 2063 129 7 0 chr4 115845189 115845526 -86482821 - AluSq SINE Alu 0 339 1 2397 83 0 3 chr4 115846096 115846398 -86481949 + AluSq SINE Alu 1 301 -12 2160 103 27 0 chr4 115846402 115846694 -86481653 + AluSq SINE Alu 2 301 -12 271 280 32 32 chr4 115847599 115847692 -86480655 + L3 LINE CR1 1399 1491 -86 1122 47 0 0 chr4 115847735 115847864 -86480483 + AluY SINE Alu 1 129 -182 416 302 107 53 chr4 115848077 115848302 -86480045 - L2 LINE L2 0 3313 3077 246 95 0 0 chr4 115848404 115848446 -86479901 + (T)n Simple_repeat Simple_repeat 1 42 0 27 0 0 0 chr4 115848672 115848699 -86479648 + AT_rich Low_complexity Low_complexity 1 27 0 277 284 25 25 chr4 115849622 115849703 -86478644 - L2 LINE L2 -44 3228 3148 1386 132 16 8 chr4 115850438 115850689 -86477658 - L1MA4 LINE L1 -1 6299 6047 1868 117 57 4 chr4 115850731 115851012 -86477335 - AluSx SINE Alu -16 296 1 1093 177 131 3 chr4 115851132 115851415 -86476932 + MER33 DNA MER1_type 5 323 -1 213 176 0 0 chr4 115851445 115851479 -86476868 - MER5A DNA MER1_type -39 150 117 666 170 9 0 chr4 115851574 115851680 -86476667 - MER5A DNA MER1_type -82 107 1 639 307 79 16 chr4 115851759 115852127 -86476220 + L1ME1 LINE L1 1593 1983 -4413 26 30 0 0 chr4 115852139 115852172 -86476175 + AT_rich Low_complexity Low_complexity 1 33 0 1746 163 16 0 chr4 115852178 115852436 -86475911 - AluSx SINE Alu -27 285 24 1432 272 69 16 chr4 115852468 115853158 -86475189 + L1ME1 LINE L1 2156 2842 -3373 1620 204 22 69 chr4 115853174 115853282 -86475065 + L1ME1 LINE L1 4853 4965 -1250 2201 103 27 0 chr4 115853282 115853574 -86474773 - AluSx SINE Alu -11 301 2 1620 204 22 69 chr4 115853574 115853970 -86474377 + L1ME1 LINE L1 4965 5333 -882 300 250 42 14 chr4 115854003 115854075 -86474272 + L1ME1 LINE L1 6046 6119 -116 26 30 0 0 chr4 115854075 115854108 -86474239 + AT_rich Low_complexity Low_complexity 1 33 0 634 91 0 36 chr4 115854301 115854411 -86473936 + (GGAA)n Simple_repeat Simple_repeat 2 107 0 29 0 0 0 chr4 115854532 115854561 -86473786 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 115855255 115855283 -86473064 + AT_rich Low_complexity Low_complexity 1 28 0 1702 136 93 12 chr4 115855283 115855337 -86473010 - L1MA8 LINE L1 -8 6283 6235 189 0 0 0 chr4 115855337 115855358 -86472989 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 315 0 0 0 chr4 115855357 115855392 -86472955 + (CA)n Simple_repeat Simple_repeat 2 36 0 1702 136 93 12 chr4 115855358 115855669 -86472678 - L1MA8 LINE L1 -56 6235 5925 276 159 80 116 chr4 115855670 115855751 -86472596 + L1MA10 LINE L1 6202 6278 -56 1716 163 0 17 chr4 115855751 115856052 -86472295 - AluJb SINE Alu -16 296 1 276 159 80 116 chr4 115856052 115856108 -86472239 + L1MA10 LINE L1 6278 6334 0 2315 75 3 31 chr4 115856115 115856435 -86471912 - AluY SINE Alu 0 311 1 438 340 169 18 chr4 115856662 115857000 -86471347 - L3 LINE CR1 -106 1471 1083 651 225 62 0 chr4 115857091 115857251 -86471096 + MIR SINE MIR 49 218 -44 544 214 71 39 chr4 115858175 115858357 -86469990 + L1ME3A LINE L1 5971 6158 -12 278 327 10 19 chr4 115858620 115858724 -86469623 - MIR SINE MIR -21 241 139 228 154 0 0 chr4 115858734 115858786 -86469561 + (CA)n Simple_repeat Simple_repeat 1 52 0 1877 139 13 51 chr4 115859004 115859320 -86469027 - AluJo SINE Alu -8 304 1 2304 85 0 3 chr4 115859707 115860002 -86468345 + AluSx SINE Alu 1 294 -18 255 271 71 32 chr4 115860083 115860363 -86467984 - L1M4 LINE L1 -3705 2441 2151 1976 166 16 22 chr4 115860376 115860744 -86467603 - MER47A DNA MER2_type 0 366 1 533 292 124 33 chr4 115860871 115861414 -86466933 + MLT1G1 LTR MaLR 3 551 -4 2516 44 7 0 chr4 115861525 115861822 -86466525 + AluY SINE Alu 1 299 -12 2354 93 0 3 chr4 115862175 115862477 -86465870 - AluSx SINE Alu -11 301 1 213 39 0 0 chr4 115862480 115862506 -86465841 + (T)n Simple_repeat Simple_repeat 1 26 0 205 292 227 16 chr4 115862746 115862931 -86465416 - MIR SINE MIR -25 237 14 277 261 11 45 chr4 115863132 115863220 -86465127 + MIR3 SINE MIR 123 207 -1 231 116 0 70 chr4 115863360 115863403 -86464944 - L2 LINE L2 -20 3293 3254 212 330 85 21 chr4 115863488 115863582 -86464765 + L3 LINE CR1 1473 1572 -5 33 43 0 0 chr4 115863762 115863809 -86464538 + AT_rich Low_complexity Low_complexity 1 47 0 2326 87 13 0 chr4 115864407 115864716 -86463631 - AluSq SINE Alu 0 313 1 838 226 101 0 chr4 115865055 115865272 -86463075 - MIR SINE MIR -10 252 14 23 33 0 0 chr4 115865314 115865344 -86463003 + AT_rich Low_complexity Low_complexity 1 30 0 2079 112 4 0 chr4 115865528 115865827 -86462520 - AluSx SINE Alu 0 304 5 25 0 0 0 chr4 115865827 115865852 -86462495 + AT_rich Low_complexity Low_complexity 1 25 0 831 244 207 13 chr4 115866644 115867110 -86461237 + L2 LINE L2 2722 3305 -8 2357 76 0 3 chr4 115867266 115867556 -86460791 - AluSc SINE Alu -20 289 1 2108 237 29 11 chr4 115868466 115868922 -86459425 - LTR40c LTR ERVL 0 465 2 360 0 0 0 chr4 115869698 115869738 -86458609 + (TC)n Simple_repeat Simple_repeat 1 40 0 241 248 159 44 chr4 115869790 115869903 -86458444 + L2 LINE L2 3138 3263 -9 469 256 49 56 chr4 115869928 115870194 -86458153 - L1MC5 LINE L1 -30 7931 7668 388 324 58 6 chr4 115870940 115871113 -86457234 + MIR SINE MIR 8 189 -73 326 304 52 9 chr4 115871111 115871226 -86457121 - L2 LINE L2 0 3313 3194 * 248 185 15 0 chr4 115871227 115871292 -86457055 + L1MC4 LINE L1 6638 6703 -1339 228 196 0 0 chr4 115871300 115871346 -86457001 - LTR66 LTR ERVL -171 439 394 228 196 0 0 chr4 115871306 115871352 -86456995 + LTR66 LTR ERVL 394 439 -171 207 233 29 0 chr4 115871352 115871455 -86456892 + (TA)n Simple_repeat Simple_repeat 2 107 0 329 239 34 11 chr4 115871455 115871543 -86456804 + L1MC4 LINE L1 6614 6703 -1339 459 174 26 0 chr4 115871556 115871671 -86456676 + (TA)n Simple_repeat Simple_repeat 2 119 0 193 149 179 0 chr4 115871671 115871738 -86456609 + L2 LINE L2 3087 3165 -148 239 235 34 0 chr4 115871744 115871863 -86456484 + (TA)n Simple_repeat Simple_repeat 2 124 0 350 294 103 22 chr4 115873833 115873969 -86454378 + L2 LINE L2 3124 3270 -2 1379 273 56 27 chr4 115874447 115875031 -86453316 - L2 LINE L2 0 3313 2747 203 61 30 0 chr4 115875031 115875064 -86453283 + (TA)n Simple_repeat Simple_repeat 2 35 0 2245 110 3 7 chr4 115875064 115875364 -86452983 - AluSx SINE Alu -13 299 1 1379 273 56 27 chr4 115875364 115875518 -86452829 - L2 LINE L2 -565 2748 2549 2223 261 132 10 chr4 115875524 115876244 -86452103 - L2 LINE L2 -1215 2099 1292 254 298 61 9 chr4 115876272 115876386 -86451961 + L3 LINE CR1 1433 1552 -25 194 232 63 95 chr4 115876750 115876845 -86451502 - MIR SINE MIR -65 197 106 2312 111 7 0 chr4 115877376 115877683 -86450664 + AluSq SINE Alu 1 309 -4 660 260 12 6 chr4 115877748 115877921 -86450426 - MIR SINE MIR -3 259 86 184 225 0 0 chr4 115877989 115878029 -86450318 + L2 LINE L2 3273 3312 -1 308 306 185 23 chr4 115878686 115878904 -86449443 - MIR SINE MIR 0 262 3 288 0 0 0 chr4 115879317 115879349 -86448998 + (TG)n Simple_repeat Simple_repeat 2 33 0 462 297 16 16 chr4 115879462 115879590 -86448757 + L2 LINE L2 3186 3313 0 231 208 0 0 chr4 115879962 115880010 -86448337 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 225 264 0 19 chr4 115880925 115880959 -86447388 + CT-rich Low_complexity Low_complexity 5 39 -17 2342 109 0 3 chr4 115880959 115881272 -86447075 - AluSx SINE Alu 0 312 1 225 264 0 19 chr4 115881272 115881290 -86447057 + CT-rich Low_complexity Low_complexity 39 56 0 390 307 56 34 chr4 115881351 115881530 -86446817 + MER5A DNA MER1_type 7 189 0 357 263 211 0 chr4 115881548 115881700 -86446647 + MIR SINE MIR 65 248 -14 760 164 38 50 chr4 115881804 115881963 -86446384 + MER5B DNA MER1_type 1 157 -21 964 126 0 0 chr4 115882426 115882553 -86445794 + FLAM_C SINE Alu 1 127 -16 189 0 0 0 chr4 115882553 115882574 -86445773 + (CA)n Simple_repeat Simple_repeat 2 22 0 507 286 60 22 chr4 115883346 115883528 -86444819 + MIR SINE MIR 74 262 0 1383 126 9 19 chr4 115884136 115884350 -86443997 - MER44D DNA MER2_type 0 605 394 507 100 0 0 chr4 115884348 115884418 -86443929 + MER41B LTR ERV1 480 549 -86 * 342 89 0 0 chr4 115884438 115884483 -86443864 - MER44D DNA MER2_type -193 416 372 1075 167 6 0 chr4 115884507 115884675 -86443672 + AluSq SINE Alu 1 169 -144 893 125 8 0 chr4 115884675 115884803 -86443544 + THE1C LTR MaLR 1 129 -246 358 160 213 0 chr4 115884818 115884893 -86443454 - MER44D DNA MER2_type -248 361 1 23 0 0 0 chr4 115885075 115885098 -86443249 + AT_rich Low_complexity Low_complexity 1 23 0 1279 275 103 4 chr4 115885282 115885805 -86442542 + L1M4 LINE L1 4541 5115 -1031 211 328 31 0 chr4 115887289 115887353 -86440994 + MIR SINE MIR 81 146 -116 2323 93 6 13 chr4 115887459 115887772 -86440575 - AluSp SINE Alu -2 311 1 4314 70 7 6 chr4 115888240 115888781 -86439566 + L1PA7 LINE L1 5611 6152 -2 21 0 0 0 chr4 115888782 115888803 -86439544 + AT_rich Low_complexity Low_complexity 1 21 0 11898 94 15 14 chr4 115889784 115891482 -86436865 + HERVH LTR ERV1 725 2423 -5290 4950 92 1 10 chr4 115891478 115892187 -86436160 + HERVH LTR ERV1 2283 2985 -4728 * 848 163 20 0 chr4 115892184 115892331 -86436016 + HERVH LTR ERV1 3141 3290 -4423 * 3517 95 4 4 chr4 115892330 115892824 -86435523 + HERVH LTR ERV1 3500 3993 -3720 4480 139 0 3 chr4 115892826 115893490 -86434857 + HERVH LTR ERV1 4488 5149 -2564 1483 106 18 5 chr4 115893491 115893708 -86434639 + HERVH LTR ERV1 5600 5819 -1894 * 2367 103 48 13 chr4 115893706 115894085 -86434262 + HERVH LTR ERV1 7322 7713 0 2854 70 119 5 chr4 115894085 115894487 -86433860 + LTR7 LTR ERV1 1 448 -2 982 201 27 0 chr4 115894994 115895178 -86433169 + MLT1D LTR MaLR 1 189 -316 567 127 54 195 chr4 115895931 115896136 -86432211 - MER69 DNA AcHobo -1 2525 1 2042 135 0 0 chr4 115896425 115896707 -86431640 + AluSx SINE Alu 1 282 -30 840 63 0 0 chr4 115896707 115896818 -86431529 + (CATATA)n Simple_repeat Simple_repeat 3 113 0 504 301 109 46 chr4 115896979 115897308 -86431039 + LTR16C LTR ERVL 142 491 0 2260 110 0 3 chr4 115898198 115898497 -86429850 + AluSx SINE Alu 1 298 -14 1080 133 0 56 chr4 115898497 115898677 -86429670 + AluSg/x SINE Alu 132 301 -9 1667 214 53 14 chr4 115898985 115899345 -86429002 + MLT1A2 LTR MaLR 1 374 0 336 303 154 19 chr4 115900288 115900450 -86427897 + MER5A DNA MER1_type 1 184 -5 2895 157 27 51 chr4 115900983 115901954 -86426393 + LOR1-int LTR ERV1 8 2094 -5443 693 128 6 54 chr4 115901922 115902074 -86426273 + LOR1-int LTR ERV1 841 1616 -3264 * 512 152 10 10 chr4 115902075 115902174 -86426173 + LOR1-int LTR ERV1 1299 1397 -4934 2775 192 40 42 chr4 115902297 115902913 -86425434 + LOR1-int LTR ERV1 1386 2002 -4329 712 212 0 44 chr4 115902913 115903050 -86425297 - FLAM_C SINE Alu 0 133 3 480 156 22 89 chr4 115903068 115903203 -86425144 + LOR1-int LTR ERV1 3455 3580 -2751 26 30 0 0 chr4 115903203 115903236 -86425111 + AT_rich Low_complexity Low_complexity 1 33 0 330 178 24 101 chr4 115903344 115903513 -86424834 + LOR1-int LTR ERV1 2818 2973 -1907 3033 174 39 105 chr4 115903532 115904648 -86423699 + LOR1-int LTR ERV1 3613 4844 -1244 1872 130 3 52 chr4 115904648 115904955 -86423392 - AluSg SINE Alu -18 292 1 5473 163 43 38 chr4 115904955 115905644 -86422703 - MER50-int LTR ERV1 -2899 4306 3609 2530 40 17 10 chr4 115905644 115905945 -86422402 + AluY SINE Alu 1 303 -8 5473 163 43 38 chr4 115905945 115906300 -86422047 - MER50-int LTR ERV1 -3596 3609 3257 405 270 85 28 chr4 115906498 115906709 -86421638 - HAL1 LINE L1 -857 1650 1428 2074 141 3 0 chr4 115906858 115907156 -86421191 - AluSx SINE Alu -11 301 3 704 273 28 11 chr4 115907241 115907417 -86420930 + MER5A DNA MER1_type 2 180 -9 2384 81 0 7 chr4 115907417 115907715 -86420632 + AluY SINE Alu 1 296 -15 2303 113 0 0 chr4 115907733 115908042 -86420305 + AluSx SINE Alu 1 309 -3 1969 134 14 0 chr4 115908050 115908326 -86420021 + AluSx SINE Alu 11 290 -22 692 219 10 92 chr4 115908483 115908554 -86419793 + MER5A DNA MER1_type 9 84 -105 2219 124 0 16 chr4 115908554 115908869 -86419478 + AluSx SINE Alu 3 312 0 692 219 10 92 chr4 115908869 115908993 -86419354 + MER5A DNA MER1_type 84 188 -1 2231 108 0 0 chr4 115908993 115909289 -86419058 + AluSq SINE Alu 2 297 -16 501 201 75 38 chr4 115910147 115910353 -86417994 - MIR SINE MIR -16 246 38 700 238 93 26 chr4 115910743 115911070 -86417277 + LTR16A1 LTR ERVL 8 457 0 572 214 43 0 chr4 115911159 115911299 -86417048 - L1M4 LINE L1 -3222 2924 2779 1001 240 43 38 chr4 115911455 115911912 -86416435 - MLT2F LTR ERVL -158 505 1 613 218 10 84 chr4 115911912 115912114 -86416233 - ERVL-F LTR ERVL -8 5756 5570 * 713 246 6 12 chr4 115912108 115912279 -86416068 - ERVL-F LTR ERVL -639 5125 4956 188 65 0 32 chr4 115912279 115912310 -86416037 + (TTTCC)n Simple_repeat Simple_repeat 5 34 0 1858 118 0 8 chr4 115912324 115912587 -86415760 - AluSq SINE Alu -4 309 49 238 143 0 0 chr4 115913684 115913719 -86414628 + MADE1 DNA Mariner 45 79 -1 301 279 55 60 chr4 115913816 115913999 -86414348 + L1MCa LINE L1 2126 2307 -4119 428 246 84 60 chr4 115914004 115914234 -86414113 + L1MCa LINE L1 2327 2519 -3907 2292 92 3 0 chr4 115914234 115914529 -86413818 + AluSg SINE Alu 1 296 -14 428 246 84 60 chr4 115914529 115914582 -86413765 + L1MCa LINE L1 2519 2569 -3857 945 236 107 14 chr4 115914602 115914958 -86413389 + L1MCa LINE L1 2715 3103 -3323 805 294 112 3 chr4 115914955 115915302 -86413045 + L1MCa LINE L1 3760 4144 -2282 * 1020 231 101 25 chr4 115915295 115915650 -86412697 + L1MC4 LINE L1 7445 7826 -216 751 168 8 0 chr4 115915744 115915863 -86412484 - FLAM_C SINE Alu -20 123 4 310 162 12 168 chr4 115915873 115915977 -86412370 + L1MC4 LINE L1 7838 7908 -134 282 116 0 0 chr4 115915977 115916020 -86412327 + (TG)n Simple_repeat Simple_repeat 2 44 0 310 162 12 168 chr4 115916020 115916082 -86412265 + L1MC4 LINE L1 7908 7978 -64 1583 122 0 0 chr4 115916447 115916668 -86411679 + AluSq SINE Alu 86 306 -7 1829 278 36 58 chr4 115917092 115917120 -86411227 + HERV16 LTR ERVL 2111 2138 -2858 2299 181 10 0 chr4 115917120 115917534 -86410813 + MER47B DNA MER2_type 1 418 0 1829 278 36 58 chr4 115917534 115918264 -86410083 + HERV16 LTR ERVL 2138 2852 -2144 1511 305 43 11 chr4 115918312 115918932 -86409415 + HERV16 LTR ERVL 3724 4363 -1291 392 323 68 15 chr4 115918999 115919262 -86409085 + HERV16 LTR ERVL 4546 4822 -942 2296 107 0 3 chr4 115920421 115920729 -86407618 + AluSx SINE Alu 1 307 -5 252 0 0 0 chr4 115920918 115920946 -86407401 + (TG)n Simple_repeat Simple_repeat 1 28 0 195 129 0 0 chr4 115920946 115920977 -86407370 + (CG)n Simple_repeat Simple_repeat 1 31 0 1837 136 32 11 chr4 115921074 115921354 -86406993 + AluJb SINE Alu 1 286 -26 189 298 144 19 chr4 115921366 115921470 -86406877 - MIR3 SINE MIR -91 117 1 21 0 0 0 chr4 115923927 115923948 -86404399 + AT_rich Low_complexity Low_complexity 1 21 0 2293 106 6 3 chr4 115923960 115924271 -86404076 + AluSx SINE Alu 1 312 0 2187 132 0 3 chr4 115924613 115924923 -86403424 - AluSx SINE Alu -3 309 1 1893 98 33 14 chr4 115926061 115926365 -86401982 - AluY SINE Alu 0 309 1 45 34 0 0 chr4 115927328 115927387 -86400960 + AT_rich Low_complexity Low_complexity 1 59 0 360 294 71 0 chr4 115927567 115927693 -86400654 + MIR SINE MIR 120 254 -8 653 306 87 33 chr4 115928420 115928753 -86399594 - L2 LINE L2 -704 2610 2260 24 67 0 0 chr4 115930751 115930796 -86397551 + AT_rich Low_complexity Low_complexity 1 45 0 855 65 0 0 chr4 115930811 115930918 -86397429 + U6 snRNA snRNA 1 107 0 349 259 107 0 chr4 115931256 115931368 -86396979 - L2 LINE L2 -10 3303 3180 2012 131 3 3 chr4 115931418 115931716 -86396631 + AluJb SINE Alu 1 298 -14 921 136 0 94 chr4 115931720 115931911 -86396436 + AluJb SINE Alu 130 302 -10 853 296 122 90 chr4 115932077 115933506 -86394841 - L2 LINE L2 -656 2658 1184 2208 98 3 7 chr4 115933845 115934140 -86394207 + AluSx SINE Alu 1 294 -18 537 248 27 0 chr4 115934630 115934779 -86393568 + MER58B DNA MER1_type 178 330 -11 1774 84 130 0 chr4 115935492 115935753 -86392594 + AluY SINE Alu 1 295 -6 611 205 16 33 chr4 115935851 115935973 -86392374 + L2 LINE L2 3194 3313 0 2256 122 0 3 chr4 115936592 115936903 -86391444 - AluSq SINE Alu -3 310 1 309 51 0 0 chr4 115937097 115937136 -86391211 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr4 115937363 115937391 -86390956 + AT_rich Low_complexity Low_complexity 1 28 0 1937 107 9 98 chr4 115937649 115937987 -86390360 - AluSp SINE Alu -5 308 1 740 197 0 43 chr4 115938210 115938398 -86389949 + AluY SINE Alu 14 193 -118 2386 94 0 0 chr4 115938949 115939248 -86389099 + AluSg SINE Alu 1 299 -11 354 329 140 6 chr4 115939854 115940018 -86388329 + MIR3 SINE MIR 23 208 0 2317 37 4 4 chr4 115940035 115940308 -86388039 + AluY SINE Alu 39 311 0 290 305 11 11 chr4 115940445 115940540 -86387807 + MIR SINE MIR 118 212 -50 25 51 0 0 chr4 115942383 115942422 -86385925 + AT_rich Low_complexity Low_complexity 1 39 0 1271 112 10 0 chr4 115943098 115943294 -86385053 - AluSg/x SINE Alu -3 309 112 22 35 0 0 chr4 115946949 115946978 -86381369 + AT_rich Low_complexity Low_complexity 1 29 0 241 341 109 88 chr4 115948238 115948371 -86379976 - L2 LINE L2 -422 2892 2763 2426 96 0 0 chr4 115948371 115948683 -86379664 + AluSx SINE Alu 1 312 0 241 341 109 88 chr4 115948683 115948833 -86379514 - L2 LINE L2 -551 2763 2599 1737 162 26 0 chr4 115948833 115949104 -86379243 + AluJb SINE Alu 1 278 -34 241 341 109 88 chr4 115949104 115949139 -86379208 - L2 LINE L2 -715 2599 2566 386 324 27 14 chr4 115949196 115949344 -86379003 - MER5B DNA MER1_type 0 178 29 547 248 92 7 chr4 115949981 115950122 -86378225 + MIR SINE MIR 3 155 -107 1169 185 9 5 chr4 115950122 115950338 -86378009 - MLT1B LTR MaLR 0 390 174 1439 98 0 0 chr4 115950338 115950531 -86377816 - AluSp SINE Alu -1 312 120 645 159 73 13 chr4 115950531 115950682 -86377665 - MLT1B LTR MaLR -228 162 3 288 283 185 0 chr4 115950684 115950776 -86377571 + MIR SINE MIR 151 259 -3 1823 163 0 44 chr4 115950780 115951100 -86377247 + AluJb SINE Alu 5 310 -2 496 248 85 35 chr4 115951119 115951260 -86377087 - L2 LINE L2 0 3272 3125 817 179 86 0 chr4 115951331 115951493 -86376854 - MER58B DNA MER1_type 0 341 166 31 26 0 0 chr4 115951661 115951699 -86376648 + AT_rich Low_complexity Low_complexity 1 38 0 458 253 70 48 chr4 115952947 115953133 -86375214 + MIR SINE MIR 59 248 -14 22 0 0 0 chr4 115954591 115954613 -86373734 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr4 115955258 115955303 -86373044 + AT_rich Low_complexity Low_complexity 1 45 0 826 167 0 0 chr4 115956331 115956463 -86371884 + FLAM_C SINE Alu 1 132 -1 2137 111 13 0 chr4 115956634 115956932 -86371415 + AluSp SINE Alu 1 302 -11 1444 79 0 3 chr4 115957046 115957288 -86371059 + AluYa5 SINE Alu 2 305 -6 231 114 0 0 chr4 115957843 115957878 -86370469 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 725 278 61 9 chr4 115958503 115958715 -86369632 - MIR SINE MIR 0 262 40 21 0 0 0 chr4 115959068 115959089 -86369258 + AT_rich Low_complexity Low_complexity 1 21 0 205 175 0 48 chr4 115960984 115961019 -86367328 + A-rich Low_complexity Low_complexity 1 33 -27 2171 122 3 0 chr4 115961019 115961322 -86367025 + AluSg SINE Alu 1 304 -6 205 175 0 48 chr4 115961322 115961349 -86366998 + A-rich Low_complexity Low_complexity 33 60 0 2268 116 0 0 chr4 115961353 115961655 -86366692 + AluSx SINE Alu 1 302 -10 302 0 26 0 chr4 115962829 115962867 -86365480 + (TA)n Simple_repeat Simple_repeat 2 40 0 22 35 0 0 chr4 115962917 115962946 -86365401 + AT_rich Low_complexity Low_complexity 1 29 0 859 161 0 15 chr4 115963062 115963199 -86365148 - FLAM_C SINE Alu -8 135 1 273 224 106 0 chr4 115963200 115963285 -86365062 + L1ME4a LINE L1 5987 6080 -41 1316 147 0 5 chr4 115963346 115963543 -86364804 - AluSg/x SINE Alu -30 280 85 1054 62 0 0 chr4 115964532 115964662 -86363685 + L1PA8 LINE L1 6030 6159 -13 1713 155 7 27 chr4 115965315 115965612 -86362735 - AluJo SINE Alu -21 291 1 2779 79 21 26 chr4 115965709 115966090 -86362257 + MLT2A1 LTR ERVL 1 379 -65 276 30 0 0 chr4 115966095 115966128 -86362219 + (TG)n Simple_repeat Simple_repeat 1 33 0 226 52 13 91 chr4 115966135 115966212 -86362135 + (TA)n Simple_repeat Simple_repeat 1 71 0 * 381 101 0 7 chr4 115966206 115966266 -86362081 + MLT2A2 LTR ERVL 402 453 0 432 293 29 21 chr4 115967221 115967361 -86360986 + MIR3 SINE MIR 16 156 -52 2046 135 0 0 chr4 115969059 115969435 -86358912 + AluSx SINE Alu 1 376 0 2229 121 0 13 chr4 115969562 115969877 -86358470 - AluSx SINE Alu -1 311 1 24 32 0 0 chr4 115970029 115970060 -86358287 + AT_rich Low_complexity Low_complexity 1 31 0 287 280 56 70 chr4 115970063 115970206 -86358141 + MIR3 SINE MIR 67 207 -1 945 208 8 3 chr4 115970808 115971028 -86357319 + L1P LINE L1 4887 5114 -1032 2072 112 0 14 chr4 115971134 115971445 -86356902 + AluSx SINE Alu 1 307 0 1669 168 41 3 chr4 115972155 115972446 -86355901 + AluSx SINE Alu 2 303 -9 417 318 133 0 chr4 115972883 115973056 -86355291 - MIR SINE MIR -20 242 47 766 190 0 0 chr4 115973098 115973219 -86355128 + FLAM_C SINE Alu 9 129 -14 24 32 0 0 chr4 115973220 115973251 -86355096 + AT_rich Low_complexity Low_complexity 1 31 0 1080 133 0 7 chr4 115973256 115973407 -86354940 + AluJb SINE Alu 1 150 -162 255 149 21 0 chr4 115973429 115973476 -86354871 + AluS SINE Alu 10 57 -244 2197 80 52 0 chr4 115973598 115973884 -86354463 - AluSc SINE Alu -3 306 6 2265 111 3 0 chr4 115974004 115974310 -86354037 + AluSx SINE Alu 1 307 -5 285 316 80 28 chr4 115974564 115974735 -86353612 + MIR SINE MIR 18 198 -64 208 250 21 0 chr4 115974811 115974859 -86353488 - L3 LINE CR1 -1 1576 1528 306 317 122 0 chr4 115974865 115975030 -86353317 + MIR SINE MIR 3 190 -67 2250 111 7 3 chr4 115975206 115975512 -86352835 + AluSq SINE Alu 1 307 -6 22 0 0 0 chr4 115975570 115975592 -86352755 + AT_rich Low_complexity Low_complexity 1 22 0 2186 193 30 44 chr4 115975750 115976252 -86352095 + MLT1D LTR MaLR 1 495 -10 2272 116 0 0 chr4 115976284 115976594 -86351753 - AluSg SINE Alu 0 310 1 2162 98 0 26 chr4 115977277 115977582 -86350765 - AluSq SINE Alu -16 297 1 2165 117 3 3 chr4 115978361 115978661 -86349686 - AluSq SINE Alu -13 300 1 2251 116 0 0 chr4 115978871 115979172 -86349175 - AluSg SINE Alu -9 301 1 21 0 0 0 chr4 115979320 115979341 -86349006 + AT_rich Low_complexity Low_complexity 1 21 0 289 317 267 22 chr4 115979353 115979533 -86348814 - L2 LINE L2 -39 3233 3010 232 56 0 0 chr4 115979558 115979594 -86348753 - AluSx SINE Alu 0 308 273 1766 77 0 0 chr4 115979604 115979824 -86348523 - AluSx SINE Alu -92 220 1 518 292 183 50 chr4 115980015 115980556 -86347791 - L2 LINE L2 -445 2869 2257 1307 333 122 33 chr4 115980611 115982066 -86346281 - L2 LINE L2 -1429 1885 301 2434 93 0 0 chr4 115982122 115982433 -86345914 + AluY SINE Alu 1 311 0 973 214 11 0 chr4 115982455 115982637 -86345710 + MER5A DNA MER1_type 1 184 -5 242 357 101 8 chr4 115983503 115983632 -86344715 - L2 LINE L2 -465 2849 2709 2505 139 35 37 chr4 115983672 115984105 -86344242 + MSTB1 LTR MaLR 1 432 0 2127 107 28 0 chr4 115984203 115984493 -86343854 + AluSg SINE Alu 1 298 -12 2021 132 0 3 chr4 115984498 115984785 -86343562 + AluSx SINE Alu 1 286 -26 258 155 23 23 chr4 115984785 115984914 -86343433 + (TA)n Simple_repeat Simple_repeat 1 129 0 1826 167 10 13 chr4 115985160 115985472 -86342875 - AluJb SINE Alu 0 312 2 447 296 154 72 chr4 115985618 115986269 -86342078 - L2 LINE L2 -670 2644 1941 397 231 11 0 chr4 115986270 115986361 -86341986 + L1MA8 LINE L1 6196 6287 -4 189 94 0 0 chr4 115986492 115986524 -86341823 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1118 98 92 0 chr4 115986524 115986688 -86341659 - AluSg/x SINE Alu -32 280 102 1473 113 0 31 chr4 115986788 115987010 -86341337 + AluSg/x SINE Alu 93 307 -5 254 286 163 10 chr4 115987220 115987318 -86341029 + MIR SINE MIR 33 145 -63 1731 176 0 0 chr4 115987340 115987619 -86340728 + AluJb SINE Alu 18 296 -16 2127 143 0 6 chr4 115988083 115988397 -86339950 + AluSx SINE Alu 1 312 0 2205 122 0 0 chr4 115989102 115989397 -86338950 + AluSx SINE Alu 1 295 -17 870 153 0 0 chr4 115989457 115989575 -86338772 + FLAM_C SINE Alu 1 118 -15 27 0 0 0 chr4 115989582 115989609 -86338738 + AT_rich Low_complexity Low_complexity 1 27 0 253 111 0 0 chr4 115989979 115990015 -86338332 + MER21A LTR ERV1 540 575 -356 27 81 0 0 chr4 115990504 115990566 -86337781 + AT_rich Low_complexity Low_complexity 1 62 0 428 85 0 0 chr4 115990566 115990625 -86337722 - MER41A LTR ERV1 -94 460 402 301 259 59 67 chr4 115990647 115990782 -86337565 + L2 LINE L2 3177 3310 -3 389 265 22 52 chr4 115990905 115991041 -86337306 - MIR SINE MIR -111 151 20 24 0 0 0 chr4 115991603 115991627 -86336720 + AT_rich Low_complexity Low_complexity 1 24 0 1799 171 0 16 chr4 115991652 115991962 -86336385 - AluJb SINE Alu -7 305 1 1846 91 0 91 chr4 115991971 115992256 -86336091 - AluSg SINE Alu -16 294 36 624 259 88 54 chr4 115993240 115993354 -86334993 + MIR SINE MIR 16 125 -137 1754 136 98 11 chr4 115993354 115993641 -86334706 + AluSx SINE Alu 1 312 0 624 259 88 54 chr4 115993641 115993716 -86334631 + MIR SINE MIR 125 217 -45 2283 199 88 99 chr4 115993716 115994451 -86333896 - LTR8A LTR ERV1 0 727 1 624 259 88 54 chr4 115994451 115994499 -86333848 + MIR SINE MIR 217 262 0 2384 54 0 17 chr4 115994751 115995047 -86333300 + AluY SINE Alu 3 293 -18 1619 167 34 0 chr4 115995353 115995616 -86332731 - AluJb SINE Alu -13 299 28 2002 134 0 0 chr4 115995630 115995944 -86332403 - AluSx SINE Alu 0 315 2 438 268 43 22 chr4 115996056 115996194 -86332153 + MIR SINE MIR 5 145 -117 261 289 72 21 chr4 115996536 115996633 -86331714 + MIR SINE MIR 26 127 -81 1933 137 7 14 chr4 115997089 115997382 -86330965 - AluJo SINE Alu -21 291 1 237 65 0 0 chr4 115997768 115997799 -86330548 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2123 104 0 37 chr4 115997799 115998097 -86330250 - AluSp SINE Alu -26 287 1 2340 95 7 0 chr4 115998494 115998800 -86329547 - AluSx SINE Alu -3 309 2 2395 88 3 0 chr4 115998971 115999268 -86329079 - AluSp SINE Alu -15 298 1 39 22 0 0 chr4 115999364 115999410 -86328937 + AT_rich Low_complexity Low_complexity 1 46 0 2215 106 3 0 chr4 115999619 115999921 -86328426 - AluSx SINE Alu -9 303 1 21 36 0 0 chr4 116000808 116000836 -86327511 + AT_rich Low_complexity Low_complexity 1 28 0 2201 129 0 0 chr4 116001088 116001382 -86326965 + AluSx SINE Alu 5 298 -14 1793 180 12 111 chr4 116001416 116001746 -86326601 + L1 LINE L1 4727 4989 -1157 1684 185 17 7 chr4 116001746 116002043 -86326304 + AluJo SINE Alu 1 300 -12 1793 180 12 111 chr4 116002043 116002228 -86326119 + L1 LINE L1 4989 5191 -955 21 0 0 0 chr4 116002259 116002280 -86326067 + AT_rich Low_complexity Low_complexity 1 21 0 1718 106 118 4 chr4 116002290 116002545 -86325802 + AluSg SINE Alu 5 288 -22 2266 104 0 3 chr4 116004757 116005054 -86323293 - AluSq SINE Alu -16 297 2 1593 149 74 41 chr4 116006197 116006560 -86321787 + L1MA6 LINE L1 5926 6300 0 2238 120 3 0 chr4 116006591 116006899 -86321448 - AluSx SINE Alu -3 309 1 2052 132 3 7 chr4 116007265 116007561 -86320786 - AluSg SINE Alu -15 295 1 1048 177 50 51 chr4 116007576 116007851 -86320496 + MLT1B LTR MaLR 3 255 -119 2099 134 0 20 chr4 116007880 116008186 -86320161 - AluSx SINE Alu -11 301 2 1798 166 0 10 chr4 116008906 116009195 -86319152 - AluJo SINE Alu -12 300 15 204 200 36 0 chr4 116009299 116009354 -86318993 + (TA)n Simple_repeat Simple_repeat 1 57 0 734 277 58 0 chr4 116009895 116010101 -86318246 + MIR SINE MIR 45 262 0 2466 50 3 0 chr4 116011162 116011459 -86316888 - AluY SINE Alu -13 298 1 487 289 12 40 chr4 116011553 116011726 -86316621 - MIR SINE MIR 0 262 95 2486 77 0 0 chr4 116014138 116014437 -86313910 - AluSq SINE Alu -13 300 2 1620 191 0 30 chr4 116014521 116014820 -86313527 - AluJo SINE Alu -22 290 1 468 228 118 0 chr4 116014929 116015056 -86313291 + MIR SINE MIR 110 251 -11 195 171 40 40 chr4 116015500 116015576 -86312771 + GA-rich Low_complexity Low_complexity 5 80 0 559 304 91 15 chr4 116016540 116016770 -86311577 + MIR SINE MIR 25 262 0 2179 112 0 0 chr4 116018350 116018635 -86309712 + AluSx SINE Alu 1 285 -27 1694 178 25 3 chr4 116019629 116019915 -86308432 - AluJo SINE Alu -20 292 1 512 275 99 27 chr4 116019957 116020179 -86308168 + L2 LINE L2 3076 3313 0 2193 98 20 0 chr4 116020234 116020529 -86307818 - AluSx SINE Alu -11 301 1 294 273 40 20 chr4 116021218 116021317 -86307030 + L1M4 LINE L1 3975 4075 -2071 661 183 63 0 chr4 116021326 116021452 -86306895 + FLAM_C SINE Alu 4 137 -6 500 0 17 0 chr4 116021463 116021482 -86306865 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 500 0 17 0 chr4 116021482 116021542 -86306805 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 475 248 40 0 chr4 116021845 116021970 -86306377 + MLT1L LTR MaLR 151 280 -335 280 243 126 10 chr4 116022102 116022205 -86306142 + MLT1L LTR MaLR 493 607 -8 37 0 0 0 chr4 116023277 116023314 -86305033 + AT_rich Low_complexity Low_complexity 1 37 0 249 259 19 0 chr4 116023420 116023474 -86304873 + L2 LINE L2 3216 3270 -2 230 295 179 9 chr4 116023552 116023664 -86304683 - L3b LINE CR1 -88 1495 1365 357 109 0 0 chr4 116023757 116023812 -86304535 + (GA)n Simple_repeat Simple_repeat 1 55 0 1721 93 132 16 chr4 116024810 116025099 -86303248 + AluSx SINE Alu 1 319 0 2124 119 10 0 chr4 116027653 116027947 -86300400 - AluSq SINE Alu -16 297 1 2447 78 3 0 chr4 116027957 116028265 -86300082 - AluY SINE Alu -2 309 1 635 190 0 2 chr4 116028510 116028759 -86299588 + AluJo SINE Alu 1 305 -7 2115 129 3 0 chr4 116028893 116029196 -86299151 + AluSx SINE Alu 1 304 -8 254 234 225 9 chr4 116031264 116031375 -86296972 + MER5A DNA MER1_type 55 189 0 560 299 27 11 chr4 116031681 116031868 -86296479 + MIR3 SINE MIR 18 207 -1 2453 82 0 0 chr4 116032056 116032359 -86295988 + AluSq SINE Alu 1 303 -10 246 209 233 0 chr4 116032388 116032474 -86295873 - MIR SINE MIR -73 135 30 376 320 189 0 chr4 116032908 116033083 -86295264 - MIR SINE MIR -8 254 47 2068 141 0 13 chr4 116034961 116035326 -86293021 + AluJb SINE Alu 3 363 0 297 90 60 30 chr4 116035838 116035905 -86292442 - L1MA5 LINE L1 -5 6295 6227 1512 166 79 4 chr4 116035977 116036276 -86292071 - AluJb SINE Alu 0 319 1 191 255 53 64 chr4 116038867 116038961 -86289386 - MIR SINE MIR -50 212 120 2278 107 0 0 chr4 116039002 116039302 -86289045 - AluSx SINE Alu -12 300 1 27 49 0 0 chr4 116039304 116039345 -86289002 + AT_rich Low_complexity Low_complexity 1 41 0 685 224 90 20 chr4 116040143 116040344 -86288003 + MER58C DNA MER1_type 1 215 0 202 349 272 9 chr4 116042662 116042894 -86285453 + L2 LINE L2 2980 3272 0 21 0 0 0 chr4 116045208 116045229 -86283118 + AT_rich Low_complexity Low_complexity 1 21 0 249 83 0 0 chr4 116045476 116045512 -86282835 + (TG)n Simple_repeat Simple_repeat 1 36 0 3861 52 2 0 chr4 116045634 116046111 -86282236 - L1PA7 LINE L1 -11 6143 5666 4267 76 13 0 chr4 116046111 116046986 -86281361 + L1PA7 LINE L1 4779 5660 -494 24 0 0 0 chr4 116047297 116047321 -86281026 + AT_rich Low_complexity Low_complexity 1 24 0 213 368 61 26 chr4 116049015 116049129 -86279218 - MIR3 SINE MIR -48 160 43 200 216 0 0 chr4 116051214 116051251 -86277096 - L2 LINE L2 -22 3250 3214 * 1061 255 0 12 chr4 116051218 116051461 -86276886 - MIR SINE MIR -20 242 3 1867 122 78 0 chr4 116052225 116052496 -86275851 - AluSx SINE Alu -20 292 1 307 252 31 47 chr4 116055595 116055671 -86272676 - MIR SINE MIR -14 248 173 3012 145 38 40 chr4 116055671 116056224 -86272123 + MLT2B3 LTR ERVL 1 552 -2 307 252 31 47 chr4 116056224 116056274 -86272073 - MIR SINE MIR -89 173 124 580 301 25 0 chr4 116056419 116056582 -86271765 + MIR SINE MIR 3 169 -93 202 406 31 26 chr4 116056644 116056836 -86271511 - L2 LINE L2 -84 3188 2996 654 222 49 12 chr4 116056880 116057042 -86271305 - MIR SINE MIR -33 229 62 607 204 86 19 chr4 116057080 116057242 -86271105 - L1ME LINE L1 -433 5688 5516 21 0 0 0 chr4 116057698 116057719 -86270628 + AT_rich Low_complexity Low_complexity 1 21 0 942 209 0 0 chr4 116057875 116058038 -86270309 - FAM SINE Alu -12 163 1 263 256 115 68 chr4 116058053 116058244 -86270103 + L2 LINE L2 3114 3313 0 2017 148 16 0 chr4 116058291 116058596 -86269751 - AluJb SINE Alu 0 312 3 691 177 24 12 chr4 116060574 116060800 -86267547 + GA-rich Low_complexity Low_complexity 1 407 -25 991 75 17 23 chr4 116060800 116060974 -86267373 + (GGAA)n Simple_repeat Simple_repeat 1 173 0 691 177 24 12 chr4 116060974 116061001 -86267346 + GA-rich Low_complexity Low_complexity 407 432 0 770 94 28 39 chr4 116061002 116061182 -86267165 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 306 0 0 0 chr4 116061296 116061330 -86267017 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 831 234 115 53 chr4 116061403 116061707 -86266640 + MER21B LTR ERV1 417 739 -124 21 0 0 0 chr4 116061952 116061973 -86266374 + AT_rich Low_complexity Low_complexity 1 21 0 2071 122 0 10 chr4 116062076 116062379 -86265968 + AluJb SINE Alu 1 300 -12 2483 44 13 3 chr4 116063423 116063721 -86264626 - AluY SINE Alu -10 301 1 707 220 43 0 chr4 116064082 116064223 -86264124 + Charlie1 DNA MER1_type 1 147 -2614 * 1645 126 87 145 chr4 116064216 116064238 -86264109 + Charlie1 DNA MER1_type 2207 2229 -532 2076 144 0 3 chr4 116064238 116064543 -86263804 + AluSx SINE Alu 1 304 -8 1645 126 87 145 chr4 116064543 116064987 -86263360 + Charlie1 DNA MER1_type 2229 2635 -126 1953 155 3 0 chr4 116064987 116065296 -86263051 - AluJo SINE Alu 0 312 3 1645 126 87 145 chr4 116065296 116065416 -86262931 + Charlie1 DNA MER1_type 2635 2760 -1 206 277 15 0 chr4 116065525 116065590 -86262757 + MIR SINE MIR 197 262 0 579 66 0 0 chr4 116065628 116065704 -86262643 + (TAG)n Simple_repeat Simple_repeat 1 76 0 7138 53 1 0 chr4 116067251 116068326 -86260021 + L1PA6 LINE L1 5076 6151 -3 296 280 21 11 chr4 116068359 116068452 -86259895 + GA-rich Low_complexity Low_complexity 3 96 0 211 176 39 0 chr4 116068522 116068573 -86259774 + T-rich Low_complexity Low_complexity 2 54 0 2289 102 3 0 chr4 116071783 116072087 -86256260 - AluSx SINE Alu -7 305 1 2063 124 0 0 chr4 116072132 116072449 -86255898 - AluSx SINE Alu 0 317 1 661 312 52 4 chr4 116072881 116073112 -86255235 - MIR SINE MIR 0 262 21 21 36 0 0 chr4 116074864 116074892 -86253455 + AT_rich Low_complexity Low_complexity 1 28 0 1711 137 74 11 chr4 116075379 116075664 -86252683 - AluSx SINE Alu -9 303 1 23 0 0 0 chr4 116076359 116076382 -86251965 + AT_rich Low_complexity Low_complexity 1 23 0 1080 115 224 0 chr4 116078686 116078783 -86249564 - MER30 DNA MER1_type -6 224 150 423 0 0 0 chr4 116078783 116078830 -86249517 + (TG)n Simple_repeat Simple_repeat 2 48 0 1080 115 224 0 chr4 116078830 116078915 -86249432 - MER30 DNA MER1_type -80 150 1 26 0 0 0 chr4 116079293 116079319 -86249028 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr4 116080358 116080386 -86247961 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr4 116081754 116081774 -86246573 + (T)n Simple_repeat Simple_repeat 1 20 0 215 341 211 0 chr4 116083353 116083476 -86244871 + L2 LINE L2 3123 3271 -1 310 231 9 74 chr4 116083908 116084016 -86244331 - MIR SINE MIR -66 196 96 372 267 30 76 chr4 116084785 116084916 -86243431 - L2 LINE L2 0 3313 3189 188 302 0 0 chr4 116086406 116086469 -86241878 - MIR SINE MIR 0 262 200 23 33 0 0 chr4 116086544 116086574 -86241773 + AT_rich Low_complexity Low_complexity 1 30 0 1488 172 130 0 chr4 116086750 116087035 -86241312 + MER58B DNA MER1_type 1 322 -19 921 185 108 5 chr4 116087221 116087416 -86240931 + MER20 DNA MER1_type 1 215 -4 1262 71 15 35 chr4 116088068 116088265 -86240082 - L1PB1 LINE L1 -7 6144 5952 2400 78 0 10 chr4 116088275 116088584 -86239763 - AluY SINE Alu -5 306 1 291 264 231 43 chr4 116089788 116089996 -86238351 + MIR SINE MIR 1 247 -15 282 241 0 0 chr4 116091317 116091404 -86236943 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 278 328 0 0 chr4 116091776 116091904 -86236443 + G-rich Low_complexity Low_complexity 1 128 0 24141 99 12 16 chr4 116091911 116095552 -86232795 + L1P LINE L1 390 4015 -2131 220 355 0 0 chr4 116097578 116097640 -86230707 + L2 LINE L2 3251 3312 -1 294 89 31 0 chr4 116098234 116098289 -86230058 - L1MC1 LINE L1 0 6344 6281 796 222 119 5 chr4 116098414 116098599 -86229748 - MIR SINE MIR -55 207 2 253 296 78 24 chr4 116099634 116099840 -86228507 - L1ME LINE L1 -347 5774 5558 186 275 14 58 chr4 116100396 116100465 -86227882 - L2 LINE L2 -79 3234 3169 1038 121 63 121 chr4 116101346 116101581 -86226766 + MER33 DNA MER1_type 1 214 -2371 722 35 0 0 chr4 116101581 116101710 -86226637 + L1PA2 LINE L1 6053 6181 0 1038 121 63 121 chr4 116101710 116101805 -86226542 + MER33 DNA MER1_type 214 313 -11 21 0 0 0 chr4 116101827 116101848 -86226499 + AT_rich Low_complexity Low_complexity 1 21 0 536 263 100 43 chr4 116102217 116102693 -86225654 + L2 LINE L2 2694 3196 -117 820 183 17 0 chr4 116102702 116102877 -86225470 + MER53 DNA DNA 12 189 0 396 281 23 39 chr4 116102903 116103031 -86225316 + L2 LINE L2 3147 3272 0 437 309 14 22 chr4 116103741 116103880 -86224467 - MIR SINE MIR -55 153 16 228 163 0 23 chr4 116104162 116104205 -86224142 + (TTG)n Simple_repeat Simple_repeat 1 42 0 2605 152 120 49 chr4 116104773 116105450 -86222897 - LTR8A LTR ERV1 -2 725 1 401 314 52 60 chr4 116105962 116106214 -86222133 - MER115 DNA AcHobo -235 458 209 602 265 101 16 chr4 116106597 116106786 -86221561 - MIR SINE MIR -57 205 1 * 840 289 18 4 chr4 116106786 116107010 -86221337 + MIR SINE MIR 35 261 -1 330 263 146 29 chr4 116107618 116107755 -86220592 + L2 LINE L2 3159 3311 -2 21 71 0 0 chr4 116108497 116108539 -86219808 + AT_rich Low_complexity Low_complexity 1 42 0 2104 91 34 10 chr4 116109419 116109717 -86218630 - AluSp SINE Alu -8 305 1 990 178 18 0 chr4 116110814 116110977 -86217370 - FRAM SINE Alu 0 166 1 186 189 0 0 chr4 116111500 116111537 -86216810 + CT-rich Low_complexity Low_complexity 3 39 0 681 188 8 0 chr4 116111542 116111659 -86216688 - AluJb SINE Alu -194 118 1 321 157 133 111 chr4 116111745 116111850 -86216497 - FLAM_A SINE Alu -4 129 30 606 241 38 6 chr4 116113174 116113332 -86215015 - MIR SINE MIR -34 228 66 2151 113 3 7 chr4 116115927 116116220 -86212127 - AluSx SINE Alu -20 292 1 21 0 0 0 chr4 116117806 116117827 -86210520 + AT_rich Low_complexity Low_complexity 1 21 0 322 333 101 41 chr4 116118023 116118341 -86210006 + L2 LINE L2 1354 1690 -1624 2115 142 0 0 chr4 116119501 116119804 -86208543 - AluJo SINE Alu -9 303 1 183 359 82 44 chr4 116120703 116121046 -86207301 + L2 LINE L2 2526 2881 -433 207 195 0 24 chr4 116121198 116121239 -86207108 + L2 LINE L2 3218 3257 -15 515 288 146 30 chr4 116121347 116121783 -86206564 - L2 LINE L2 -78 3235 2753 233 375 95 47 chr4 116123273 116123569 -86204778 + L2 LINE L2 2963 3272 0 711 223 69 45 chr4 116124521 116124663 -86203684 + MER3 DNA MER1_type 3 140 -69 396 55 0 0 chr4 116124663 116124718 -86203629 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1606 151 14 55 chr4 116124720 116125011 -86203336 - AluJb SINE Alu -33 279 1 711 223 69 45 chr4 116125011 116125067 -86203280 + MER3 DNA MER1_type 140 209 0 386 280 127 32 chr4 116125078 116125235 -86203112 + MIR3 SINE MIR 23 194 -14 2094 103 4 4 chr4 116125280 116125586 -86202761 - AluSx SINE Alu 0 306 1 1566 166 71 17 chr4 116125722 116126018 -86202329 + AluJo SINE Alu 1 312 0 1560 289 39 54 chr4 116126369 116127038 -86201309 + MER115 DNA AcHobo 5 663 -30 309 331 88 15 chr4 116127408 116127544 -86200803 - MIR3 SINE MIR -6 202 57 255 31 0 0 chr4 116130009 116130041 -86198306 + (CA)n Simple_repeat Simple_repeat 1 32 0 4710 43 0 2 chr4 116130088 116130652 -86197695 + L1PA6 LINE L1 5584 6146 -8 374 247 139 42 chr4 116131058 116131224 -86197123 - MIR SINE MIR 0 262 81 1083 202 72 14 chr4 116131319 116131610 -86196737 + L1ME3A LINE L1 5832 6148 -22 2301 85 0 3 chr4 116132453 116132748 -86195599 + AluSc SINE Alu 5 298 -11 216 0 0 0 chr4 116132963 116132987 -86195360 + (TA)n Simple_repeat Simple_repeat 2 25 0 747 143 0 8 chr4 116132988 116133107 -86195240 - AluJb SINE Alu -194 118 1 812 249 0 6 chr4 116134594 116134763 -86193584 + FAM SINE Alu 1 168 -7 2097 77 0 4 chr4 116134771 116135031 -86193316 + AluY SINE Alu 35 293 -18 21 71 0 0 chr4 116135849 116135891 -86192456 + AT_rich Low_complexity Low_complexity 1 42 0 211 245 28 66 chr4 116136534 116136640 -86191707 + (CACCC)n Simple_repeat Simple_repeat 1 102 0 24 32 0 0 chr4 116137288 116137319 -86191028 + AT_rich Low_complexity Low_complexity 1 31 0 2207 112 0 20 chr4 116138606 116138910 -86189437 - AluSx SINE Alu -12 300 3 2207 112 3 3 chr4 116138912 116139216 -86189131 - AluSx SINE Alu -6 306 3 21 0 0 0 chr4 116140711 116140732 -86187615 + AT_rich Low_complexity Low_complexity 1 21 0 2245 101 3 3 chr4 116141821 116142127 -86186220 - AluSx SINE Alu -6 306 1 206 373 15 0 chr4 116142527 116142594 -86185753 - MIR SINE MIR -104 104 37 400 311 52 93 chr4 116142694 116142942 -86185405 - L2 LINE L2 -8 3264 3027 289 305 190 37 chr4 116142948 116143324 -86185023 - L2 LINE L2 -646 2668 2182 2393 100 6 0 chr4 116143324 116143635 -86184712 + AluSq SINE Alu 1 313 0 289 305 190 37 chr4 116143635 116143799 -86184548 - L2 LINE L2 -1132 2182 2045 565 258 189 0 chr4 116145495 116145685 -86182662 - MIR SINE MIR -29 233 8 2164 102 3 16 chr4 116145694 116145997 -86182350 - AluSc SINE Alu -10 299 1 348 325 60 24 chr4 116146045 116146211 -86182136 - L2 LINE L2 0 3272 3101 240 254 32 0 chr4 116147470 116147533 -86180814 + MER46C DNA MER2_type 3 67 -271 2229 121 0 0 chr4 116147543 116147848 -86180499 - AluSx SINE Alu -7 305 1 933 240 52 7 chr4 116147870 116148141 -86180206 + MER46C DNA MER2_type 55 337 -1 207 0 0 0 chr4 116148994 116149017 -86179330 + (T)n Simple_repeat Simple_repeat 1 23 0 763 316 117 59 chr4 116152325 116152565 -86175782 + L3 LINE CR1 360 585 -992 2254 116 0 0 chr4 116152565 116152867 -86175480 - AluSq SINE Alu -11 302 1 763 316 117 59 chr4 116152867 116153473 -86174874 + L3 LINE CR1 585 1255 -322 252 307 73 138 chr4 116153632 116153850 -86174497 + L3 LINE CR1 1261 1464 -113 453 338 127 23 chr4 116155244 116155552 -86172795 - MER102b DNA MER1_type 0 341 2 540 0 0 0 chr4 116157730 116157790 -86170557 + (TTCTG)n Simple_repeat Simple_repeat 4 63 0 240 35 0 0 chr4 116157789 116157818 -86170529 + (TTGTG)n Simple_repeat Simple_repeat 4 32 0 * 2209 95 24 3 chr4 116158344 116158640 -86169707 - AluSc SINE Alu -7 302 1 210 71 0 0 chr4 116158877 116158905 -86169442 + (TTA)n Simple_repeat Simple_repeat 2 29 0 28 86 0 0 chr4 116160174 116160244 -86168103 + AT_rich Low_complexity Low_complexity 1 70 0 210 130 14 43 chr4 116160257 116160326 -86168021 + (TAAA)n Simple_repeat Simple_repeat 1 67 0 249 264 55 91 chr4 116162613 116162723 -86165624 + MIR SINE MIR 49 154 -108 1981 143 3 10 chr4 116162728 116163042 -86165305 + AluJb SINE Alu 1 312 0 350 89 76 13 chr4 116163063 116163142 -86165205 + GA-rich Low_complexity Low_complexity 1 84 0 543 301 94 8 chr4 116163196 116163424 -86164923 + MIR SINE MIR 19 262 0 369 260 98 8 chr4 116163529 116163652 -86164695 + MIR SINE MIR 20 153 -109 235 295 39 13 chr4 116163949 116164027 -86164320 - L3 LINE CR1 -46 1531 1452 194 351 140 42 chr4 116164474 116165097 -86163250 + L2 LINE L2 1815 2498 -816 315 268 117 96 chr4 116165373 116165571 -86162776 + MLT1L LTR MaLR 111 308 -203 23 0 0 0 chr4 116166054 116166077 -86162270 + AT_rich Low_complexity Low_complexity 1 23 0 1984 130 3 0 chr4 116166078 116166363 -86161984 - AluSx SINE Alu -26 286 1 2743 125 42 6 chr4 116166598 116167093 -86161254 - L1MA8 LINE L1 -6 6285 5773 221 373 20 52 chr4 116167113 116167266 -86161081 + L2 LINE L2 2891 3038 -234 534 304 219 15 chr4 116167425 116168046 -86160301 - L2 LINE L2 0 3313 2543 199 366 14 0 chr4 116168046 116168117 -86160230 + L2 LINE L2 3239 3310 -3 23 0 0 0 chr4 116170738 116170761 -86157586 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 116171755 116171778 -86156569 + AT_rich Low_complexity Low_complexity 1 23 0 1402 239 79 30 chr4 116171946 116172351 -86155996 - L1ME3A LINE L1 -45 6125 5701 1735 100 15 23 chr4 116172351 116172612 -86155735 + AluSx SINE Alu 1 259 -53 1570 250 26 93 chr4 116173099 116173195 -86155152 - L1ME LINE L1 -377 5793 5692 2059 94 24 21 chr4 116173195 116173482 -86154865 + AluSx SINE Alu 1 288 -24 1570 250 26 93 chr4 116173482 116174455 -86153892 - L1ME LINE L1 -478 5692 4807 286 287 32 0 chr4 116174915 116175009 -86153338 - MIR SINE MIR -56 206 110 27 62 0 0 chr4 116175362 116175410 -86152937 + AT_rich Low_complexity Low_complexity 1 48 0 264 241 29 124 chr4 116175664 116175801 -86152546 - L2 LINE L2 -13 3259 3136 349 343 7 14 chr4 116178239 116178385 -86149962 - L2 LINE L2 -683 2631 2487 460 281 128 20 chr4 116179622 116179825 -86148522 + MIR SINE MIR 1 225 -37 29 47 0 0 chr4 116179863 116179906 -86148441 + AT_rich Low_complexity Low_complexity 1 43 0 2185 95 33 23 chr4 116179948 116180254 -86148093 + AluSg SINE Alu 1 309 -1 3859 119 210 82 chr4 116181565 116182943 -86145404 - pTR5 LTR ERV1 0 2438 741 184 345 176 38 chr4 116183729 116184303 -86144044 + L2 LINE L2 2108 2760 -554 1047 284 34 47 chr4 116184475 116185087 -86143260 + L1MC5 LINE L1 7303 7906 -55 25 0 0 0 chr4 116185101 116185126 -86143221 + AT_rich Low_complexity Low_complexity 1 25 0 2364 87 0 3 chr4 116185388 116185698 -86142649 - AluSg1 SINE Alu 0 309 1 477 221 30 30 chr4 116186086 116186217 -86142130 + MIR SINE MIR 63 193 -69 408 319 77 0 chr4 116187154 116187336 -86141011 - MER91A DNA MER1_type 0 196 1 25 31 0 0 chr4 116187544 116187576 -86140771 + AT_rich Low_complexity Low_complexity 1 32 0 2248 109 7 3 chr4 116187956 116188260 -86140087 + AluSq SINE Alu 2 306 -7 360 0 0 0 chr4 116188265 116188305 -86140042 + (TA)n Simple_repeat Simple_repeat 2 41 0 443 276 204 6 chr4 116188771 116188952 -86139395 - MIR SINE MIR -30 232 16 3129 132 21 19 chr4 116190946 116191463 -86136884 - L1MA8 LINE L1 -17 6274 5757 2377 102 0 0 chr4 116191610 116191913 -86136434 + AluSq SINE Alu 1 303 -10 1871 186 4 13 chr4 116192012 116192390 -86135957 + L1P3 LINE L1 1 702 -5759 201 150 33 17 chr4 116192617 116192677 -86135670 + (GTGTG)n Simple_repeat Simple_repeat 3 63 0 265 173 6 45 chr4 116192677 116192856 -86135491 + G-rich Low_complexity Low_complexity 2 173 0 221 107 15 92 chr4 116192906 116193037 -86135310 + (TGGGGG)n Simple_repeat Simple_repeat 6 126 0 1499 176 54 57 chr4 116193038 116193463 -86134884 + MSTA LTR MaLR 5 428 0 2645 134 39 0 chr4 116193582 116193991 -86134356 - MSTA LTR MaLR -2 426 2 2290 98 3 0 chr4 116194645 116194951 -86133396 - AluSx SINE Alu -5 307 1 275 234 45 90 chr4 116195067 116195178 -86133169 - L2 LINE L2 -8 3264 3159 1336 95 5 0 chr4 116195202 116195391 -86132956 - L1P LINE L1 -853 5293 5104 2369 82 3 19 chr4 116195391 116195704 -86132643 + L1PA8 LINE L1 5860 6169 -3 453 214 45 0 chr4 116195732 116195759 -86132588 - L1MA9 LINE L1 -22 6290 6264 4402 157 30 8 chr4 116195759 116196561 -86131786 - L1MA9 LINE L1 -45 6121 5339 213 286 116 75 chr4 116197286 116197433 -86130914 + L2 LINE L2 2706 2858 -456 1979 155 7 0 chr4 116197695 116198004 -86130343 - AluSx SINE Alu 0 312 2 759 280 62 9 chr4 116198036 116198261 -86130086 + MIR SINE MIR 20 256 -6 34579 81 8 9 chr4 116198342 116203939 -86124408 - L1PA6 LINE L1 -2 6152 558 832 118 7 44 chr4 116204194 116204330 -86124017 - AluSq/x SINE Alu -179 133 3 1980 107 32 11 chr4 116204596 116204877 -86123470 + L1PA11 LINE L1 5888 6174 0 1030 280 40 20 chr4 116205969 116206269 -86122078 + LTR16C LTR ERVL 147 452 -39 195 42 0 0 chr4 116206521 116206545 -86121802 + (CA)n Simple_repeat Simple_repeat 2 25 0 2161 112 0 20 chr4 116206602 116206929 -86121418 + AluSx SINE Alu 1 312 0 21 0 0 0 chr4 116207386 116207407 -86120940 + AT_rich Low_complexity Low_complexity 1 21 0 393 274 236 29 chr4 116209290 116209498 -86118849 - MIR SINE MIR -10 252 2 1055 191 33 28 chr4 116209779 116209994 -86118353 - AluJo SINE Alu -12 300 85 7997 137 88 57 chr4 116210059 116211712 -86116635 + pTR5 LTR ERV1 735 2438 0 2138 136 0 0 chr4 116211836 116212130 -86116217 + AluSx SINE Alu 1 294 -18 8637 173 125 20 chr4 116213694 116215282 -86113065 + MER52A LTR ERV1 1 1755 0 2146 125 3 0 chr4 116216038 116216335 -86112012 - AluSq SINE Alu -15 298 1 301 95 24 0 chr4 116216738 116216780 -86111567 - THE1A LTR MaLR 0 355 313 2363 101 99 3 chr4 116216780 116217145 -86111202 + MLT2A1 LTR ERVL 1 400 -44 280 183 0 0 chr4 116217147 116217207 -86111140 - L1MC4 LINE L1 -1349 6693 6634 2014 161 62 11 chr4 116217207 116217560 -86110787 - THE1C LTR MaLR -2 373 3 24 0 0 0 chr4 116218433 116218457 -86109890 + AT_rich Low_complexity Low_complexity 1 24 0 2354 181 52 2 chr4 116218693 116219101 -86109246 + Tigger5 DNA MER2_type 1 428 -1895 4567 109 37 29 chr4 116219101 116220105 -86108242 + MER11A LTR ERVK 1 1266 0 9533 144 29 72 chr4 116220105 116222090 -86106257 + Tigger5 DNA MER2_type 423 2323 0 22 0 0 0 chr4 116222148 116222170 -86106177 + AT_rich Low_complexity Low_complexity 1 22 0 180 176 0 0 chr4 116222273 116222307 -86106040 + A-rich Low_complexity Low_complexity 4 37 0 23 54 0 0 chr4 116222370 116222407 -86105940 + AT_rich Low_complexity Low_complexity 1 37 0 361 331 83 11 chr4 116223535 116223764 -86104583 - MIR SINE MIR -2 260 19 345 47 0 0 chr4 116223900 116223943 -86104404 + (CA)n Simple_repeat Simple_repeat 1 43 0 278 264 78 8 chr4 116224260 116224389 -86103958 + MER117 DNA MER1_type 5 142 -55 230 289 90 58 chr4 116224437 116224593 -86103754 - L2 LINE L2 -1519 1795 1635 3488 284 112 37 chr4 116224832 116225914 -86102433 - L2 LINE L2 0 3313 2313 201 74 0 0 chr4 116225914 116225941 -86102406 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1605 161 64 4 chr4 116225944 116226211 -86102136 - AluJo SINE Alu -29 283 1 3488 284 112 37 chr4 116226211 116226247 -86102100 - L2 LINE L2 -1001 2312 2280 2207 119 0 3 chr4 116226247 116226557 -86101790 + AluSc SINE Alu 1 309 0 3488 284 112 37 chr4 116226557 116227022 -86101325 - L2 LINE L2 -1033 2280 1615 773 209 0 0 chr4 116227023 116227152 -86101195 + Tigger7 DNA MER2_type 100 228 -2259 * 2039 116 37 63 chr4 116227151 116227530 -86100817 + Tigger7 DNA MER2_type 2218 2586 -1 1626 130 65 11 chr4 116228576 116228838 -86099509 - AluJb SINE Alu -36 276 1 2084 55 0 26 chr4 116228947 116229219 -86099128 - AluY SINE Alu -46 265 1 542 288 19 25 chr4 116229902 116230062 -86098285 - MIR SINE MIR -100 162 4 29 0 0 0 chr4 116231704 116231733 -86096614 + AT_rich Low_complexity Low_complexity 1 29 0 22 21 0 62 chr4 116232615 116232663 -86095684 + AT_rich Low_complexity Low_complexity 1 45 0 2349 103 0 0 chr4 116233723 116234034 -86094313 - AluY SINE Alu 0 311 1 2193 159 15 13 chr4 116235921 116236317 -86092030 + MLT2C1 LTR ERVL 1 397 0 196 277 21 99 chr4 116236502 116236643 -86091704 + L2 LINE L2 2302 2431 -883 317 324 102 75 chr4 116237215 116237576 -86090771 + L2 LINE L2 2898 3268 -4 26 30 0 0 chr4 116237872 116237905 -86090442 + AT_rich Low_complexity Low_complexity 1 33 0 1114 236 156 36 chr4 116239388 116239773 -86088574 + MLT1J1 LTR MaLR 8 438 -8 23 0 0 0 chr4 116239867 116239890 -86088457 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr4 116240475 116240503 -86087844 + AT_rich Low_complexity Low_complexity 1 28 0 439 308 26 13 chr4 116240829 116240985 -86087362 + MIR SINE MIR 28 185 -77 228 67 0 0 chr4 116241902 116241932 -86086415 + (TG)n Simple_repeat Simple_repeat 2 31 0 2333 169 38 21 chr4 116242726 116243153 -86085194 + Tigger2a DNA MER2_type 1 434 0 705 263 88 14 chr4 116243849 116244066 -86084281 + MIR SINE MIR 13 245 -17 1735 83 25 0 chr4 116245197 116245438 -86082909 + L1PB1 LINE L1 5905 6151 0 2501 64 0 0 chr4 116245537 116245835 -86082512 - AluY SINE Alu -13 298 1 403 282 168 7 chr4 116247277 116247426 -86080921 + MIR3 SINE MIR 30 202 -6 21 0 0 0 chr4 116248048 116248069 -86080278 + AT_rich Low_complexity Low_complexity 1 21 0 423 38 0 0 chr4 116249412 116249465 -86078882 + (CA)n Simple_repeat Simple_repeat 2 54 0 182 248 198 33 chr4 116253213 116253334 -86075013 - MIR3 SINE MIR -67 141 1 266 286 100 0 chr4 116253472 116253542 -86074805 + L2 LINE L2 3144 3220 -52 281 56 0 0 chr4 116253622 116253658 -86074689 - MADE1 DNA Mariner -44 36 1 22 35 0 0 chr4 116254262 116254291 -86074056 + AT_rich Low_complexity Low_complexity 1 29 0 1525 187 8 0 chr4 116254721 116254972 -86073375 - AluJo SINE Alu -59 253 1 1738 127 40 87 chr4 116255070 116255392 -86072955 - AluSx SINE Alu -5 307 1 438 322 124 5 chr4 116256948 116257150 -86071197 - MIR SINE MIR -1 261 36 237 339 0 0 chr4 116257589 116257654 -86070693 + L2 LINE L2 3158 3222 -50 207 0 0 0 chr4 116257733 116257756 -86070591 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 263 316 60 43 chr4 116257760 116257877 -86070470 + MIR SINE MIR 21 139 -123 2213 106 0 0 chr4 116261046 116261329 -86067018 + AluSx SINE Alu 15 297 -15 610 202 26 0 chr4 116261373 116261487 -86066860 + FLAM_C SINE Alu 3 119 -14 210 270 149 0 chr4 116262498 116262572 -86065775 + MIR3 SINE MIR 121 205 -3 288 77 0 0 chr4 116263353 116263392 -86064955 + (TG)n Simple_repeat Simple_repeat 1 39 0 1749 147 3 54 chr4 116264467 116264780 -86063567 - AluJo SINE Alu -15 297 1 284 187 0 27 chr4 116266191 116266266 -86062081 + GA-rich Low_complexity Low_complexity 4 76 0 259 286 110 19 chr4 116266409 116266553 -86061794 + MIR3 SINE MIR 1 152 -65 379 309 51 38 chr4 116266570 116266806 -86061541 - L2 LINE L2 0 3313 3075 52 30 0 0 chr4 116266885 116266951 -86061396 + AT_rich Low_complexity Low_complexity 1 66 0 1441 177 74 14 chr4 116267019 116267302 -86061045 - AluJo SINE Alu -12 300 1 24 0 0 0 chr4 116267773 116267797 -86060550 + AT_rich Low_complexity Low_complexity 1 24 0 1769 120 40 11 chr4 116267799 116268074 -86060273 + AluY SINE Alu 16 298 -13 3609 30 2 0 chr4 116268347 116268776 -86059571 - L1PA5 LINE L1 -2 6152 5723 5957 36 8 1 chr4 116268776 116269826 -86058521 + L1PA5 LINE L1 4662 5718 -437 391 330 60 37 chr4 116269861 116270209 -86058138 - L1ME LINE L1 -440 5681 5326 189 107 0 0 chr4 116270928 116270956 -86057391 + (TG)n Simple_repeat Simple_repeat 1 28 0 220 273 53 76 chr4 116271429 116271561 -86056786 - L3b LINE CR1 -291 1292 1164 2150 152 6 3 chr4 116271779 116272115 -86056232 - MER1B DNA MER1_type 0 337 1 2038 158 24 3 chr4 116273691 116274027 -86054320 - MER2 DNA MER2_type 0 344 2 3225 139 31 15 chr4 116274341 116274860 -86053487 - MER1A DNA MER1_type 0 527 1 235 345 35 9 chr4 116277227 116277343 -86051004 - L2 LINE L2 0 3272 3154 807 225 129 14 chr4 116277925 116278134 -86050213 - MIR SINE MIR -29 233 1 27 0 0 0 chr4 116278144 116278171 -86050176 + AT_rich Low_complexity Low_complexity 1 27 0 489 317 75 0 chr4 116278690 116278876 -86049471 - MIR SINE MIR -15 247 48 4428 161 36 29 chr4 116279279 116279503 -86048844 - L1MB8 LINE L1 0 6178 5957 2306 105 0 3 chr4 116279503 116279808 -86048539 - AluSx SINE Alu -2 310 7 4428 161 36 29 chr4 116279808 116280561 -86047786 - L1MB8 LINE L1 -221 5957 5195 846 95 0 29 chr4 116280566 116280703 -86047644 - L1PA13 LINE L1 0 6163 6031 2485 46 0 10 chr4 116281259 116281561 -86046786 - AluY SINE Alu -12 299 1 314 219 16 0 chr4 116283565 116283629 -86044718 + L2 LINE L2 3249 3313 0 46 19 0 0 chr4 116285793 116285846 -86042501 + AT_rich Low_complexity Low_complexity 1 53 0 277 331 123 8 chr4 116286266 116286396 -86041951 + L2 LINE L2 3128 3272 0 272 375 45 0 chr4 116286428 116286516 -86041831 - L2 LINE L2 -42 3271 3180 359 218 274 0 chr4 116286538 116286662 -86041685 - L2 LINE L2 -1384 1930 1773 1715 196 3 0 chr4 116287387 116287678 -86040669 - AluSx SINE Alu -20 292 1 382 346 40 26 chr4 116289374 116289602 -86038745 + MIR SINE MIR 20 250 -12 275 304 16 134 chr4 116289966 116290219 -86038128 - L2 LINE L2 -191 3081 2859 7350 169 59 19 chr4 116291384 116292932 -86035415 - L1MCa LINE L1 -4240 2187 116 233 256 244 0 chr4 116293085 116293163 -86035184 - MER5A DNA MER1_type -83 106 10 29 28 0 0 chr4 116293325 116293361 -86034986 + AT_rich Low_complexity Low_complexity 1 36 0 968 98 148 44 chr4 116293426 116293531 -86034816 + MER30 DNA MER1_type 1 94 -136 324 0 0 0 chr4 116293531 116293567 -86034780 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 968 98 148 44 chr4 116293567 116293644 -86034703 + MER30 DNA MER1_type 94 202 -28 820 114 48 24 chr4 116293730 116293897 -86034450 - L1MA5 LINE L1 -6 6294 6124 1529 148 0 49 chr4 116294251 116294515 -86033832 - AluJo SINE Alu -39 273 23 763 238 72 0 chr4 116295816 116295997 -86032350 + MER20 DNA MER1_type 7 200 -19 547 255 40 13 chr4 116296007 116296156 -86032191 + MER5A DNA MER1_type 1 153 -36 716 167 14 0 chr4 116296285 116296429 -86031918 + L1MA7 LINE L1 6143 6288 -3 7944 226 55 16 chr4 116296433 116298454 -86029893 + L1MC1 LINE L1 2261 4388 -1758 1881 178 3 0 chr4 116298454 116298757 -86029590 + AluJb SINE Alu 1 304 -8 7944 226 55 16 chr4 116298757 116299106 -86029241 + L1MC1 LINE L1 4388 4722 -1424 6164 172 25 5 chr4 116299105 116300377 -86027970 + L1MC1 LINE L1 5023 6327 -6 * 363 261 72 9 chr4 116301200 116301311 -86027036 + MIR SINE MIR 87 204 -58 1581 170 0 100 chr4 116301686 116302015 -86026332 + AluJo SINE Alu 1 296 -16 188 309 0 0 chr4 116302377 116302432 -86025915 + L2 LINE L2 3258 3312 -1 1639 134 0 158 chr4 116304619 116305030 -86023317 + MER7A DNA MER2_type 3 346 0 1621 143 147 25 chr4 116305230 116305672 -86022675 - LTR54B LTR ERV1 -2 496 1 1557 176 0 34 chr4 116305710 116306005 -86022342 + AluJb SINE Alu 1 285 -27 24 0 0 0 chr4 116306006 116306030 -86022317 + AT_rich Low_complexity Low_complexity 1 24 0 2335 86 0 7 chr4 116306051 116306354 -86021993 - AluSc SINE Alu -7 302 2 536 256 227 24 chr4 116307262 116307469 -86020878 + MIR SINE MIR 14 262 0 24 32 0 0 chr4 116308004 116308035 -86020312 + AT_rich Low_complexity Low_complexity 1 31 0 408 163 76 11 chr4 116308350 116308442 -86019905 + L1MC1 LINE L1 6235 6332 -1 373 211 219 8 chr4 116308458 116308586 -86019761 + L1ME LINE L1 5511 5665 -456 242 368 62 42 chr4 116309403 116309596 -86018751 - L2 LINE L2 -90 3182 2986 433 319 116 55 chr4 116310101 116310832 -86017515 - L2 LINE L2 -447 2867 2092 949 109 0 22 chr4 116311681 116311818 -86016529 + AluSx SINE Alu 1 134 -179 814 211 29 0 chr4 116311963 116312134 -86016213 + AluSx SINE Alu 134 309 -1 894 132 66 80 chr4 116312238 116312451 -86015896 - Tigger1 DNA MER2_type 0 2418 2209 25 0 0 0 chr4 116312475 116312500 -86015847 + AT_rich Low_complexity Low_complexity 1 25 0 5101 30 3 0 chr4 116312579 116313182 -86015165 + L1PA4 LINE L1 5549 6153 -2 1700 173 0 4 chr4 116314158 116314430 -86013917 + AluJb SINE Alu 12 282 -30 2041 113 0 7 chr4 116315753 116316027 -86012320 - AluSx SINE Alu -40 272 1 2263 221 64 93 chr4 116316143 116316796 -86011551 - L1MC5 LINE L1 -160 7801 7131 180 0 0 0 chr4 116316796 116316816 -86011531 + (GA)n Simple_repeat Simple_repeat 2 21 0 1672 201 7 7 chr4 116316819 116317127 -86011220 - AluJo SINE Alu -4 308 1 2263 221 64 93 chr4 116317127 116317612 -86010735 - L1MC5 LINE L1 -832 7129 6692 26 0 0 0 chr4 116317928 116317954 -86010393 + AT_rich Low_complexity Low_complexity 1 26 0 2080 229 150 14 chr4 116318257 116318979 -86009368 + L1M4 LINE L1 2111 2930 -3216 871 27 0 27 chr4 116320398 116320510 -86007837 + L1PA3 LINE L1 6047 6155 0 216 352 19 19 chr4 116320962 116321067 -86007280 + MIR SINE MIR 1 105 -157 926 131 0 21 chr4 116321069 116321214 -86007133 - FLAM_C SINE Alu -1 142 1 317 119 17 17 chr4 116321340 116321399 -86006948 + LTR19C LTR ERV1 719 777 -2 4666 127 25 3 chr4 116321546 116322238 -86006109 + LTR39 LTR ERV1 1 707 -76 413 293 75 8 chr4 116322541 116322674 -86005673 - MER5B DNA MER1_type -36 142 1 2381 81 3 0 chr4 116322720 116323015 -86005332 - AluSp SINE Alu -17 296 1 1175 22 0 0 chr4 116323462 116323601 -86004746 + L1PA2 LINE L1 6017 6155 0 350 177 257 0 chr4 116324532 116324645 -86003702 - Charlie7 DNA MER1_type -1891 721 580 572 179 14 0 chr4 116324717 116324950 -86003397 + Charlie5 DNA MER1_type 2387 2624 0 203 216 39 0 chr4 116325801 116325852 -86002495 + (CATA)n Simple_repeat Simple_repeat 3 55 0 204 297 40 30 chr4 116326183 116326284 -86002063 + L3b LINE CR1 1350 1451 -132 327 323 16 8 chr4 116327197 116327321 -86001026 + L2 LINE L2 3189 3313 0 588 311 137 46 chr4 116328277 116328891 -85999456 - L2 LINE L2 -879 2435 1766 293 243 14 14 chr4 116329580 116329654 -85998693 - L2 LINE L2 0 3313 3240 204 37 0 0 chr4 116329685 116329695 -85998652 + (TAA)n Simple_repeat Simple_repeat 2 11 -17 2164 108 0 3 chr4 116329695 116329983 -85998364 + AluSq SINE Alu 1 287 -26 204 37 0 0 chr4 116329983 116329999 -85998348 + (TAA)n Simple_repeat Simple_repeat 10 28 0 959 212 169 25 chr4 116330346 116330733 -85997614 + MLT1F LTR MaLR 74 542 0 237 308 67 58 chr4 116330970 116331210 -85997137 + L2 LINE L2 2481 2722 -592 279 0 0 0 chr4 116331564 116331595 -85996752 + (TG)n Simple_repeat Simple_repeat 2 32 0 30596 98 15 22 chr4 116331595 116332276 -85996071 - L1PA7 LINE L1 -29 6440 5755 2406 81 3 3 chr4 116332276 116332586 -85995761 - AluY SINE Alu -1 310 1 30596 98 15 22 chr4 116332586 116333250 -85995097 - L1PA7 LINE L1 -714 5755 5088 4796 31 2 3 chr4 116333250 116333823 -85994524 - L1PA4 LINE L1 0 6155 5584 30596 98 15 22 chr4 116333823 116338176 -85990171 - L1PA7 LINE L1 -1381 5088 768 2527 53 3 0 chr4 116338647 116338946 -85989401 - AluY SINE Alu -11 300 1 2210 112 0 7 chr4 116339141 116339446 -85988901 + AluSq SINE Alu 6 308 -5 2185 130 0 0 chr4 116341114 116341414 -85986933 + AluSx SINE Alu 1 300 -12 27 81 0 0 chr4 116342879 116342941 -85985406 + AT_rich Low_complexity Low_complexity 1 62 0 231 93 23 23 chr4 116342971 116343014 -85985333 - Alu SINE Alu -8 125 83 190 375 87 10 chr4 116343019 116343123 -85985224 - L2 LINE L2 -10 3262 3151 22 35 0 0 chr4 116343332 116343361 -85984986 + AT_rich Low_complexity Low_complexity 1 29 0 869 156 0 6 chr4 116343512 116343685 -85984662 + (TG)n Simple_repeat Simple_repeat 1 172 0 397 179 0 0 chr4 116344710 116344788 -85983559 + L1MB5 LINE L1 6088 6165 -9 21 0 0 0 chr4 116345667 116345688 -85982659 + AT_rich Low_complexity Low_complexity 1 21 0 2323 155 19 43 chr4 116346158 116346641 -85981706 + L1MB3 LINE L1 5706 6176 -7 2352 74 17 0 chr4 116346683 116346979 -85981368 + AluSp SINE Alu 1 301 -12 338 291 155 20 chr4 116347367 116347515 -85980832 - MIR SINE MIR -14 248 81 208 273 131 10 chr4 116347790 116347889 -85980458 + L3b LINE CR1 1355 1465 -118 198 355 123 14 chr4 116352083 116352221 -85976126 - L2 LINE L2 -1 3271 3119 614 182 8 25 chr4 116354582 116354703 -85973644 - FLAM_C SINE Alu -11 132 14 940 218 53 0 chr4 116354755 116354943 -85973404 + MER20 DNA MER1_type 12 209 -10 270 354 111 30 chr4 116355747 116355945 -85972402 - L2 LINE L2 -219 3053 2840 456 279 174 51 chr4 116357644 116357960 -85970387 + MLT1J2 LTR MaLR 1 355 -95 288 0 0 0 chr4 116357990 116358022 -85970325 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 207 114 0 0 chr4 116358043 116358078 -85970269 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 1898 143 7 3 chr4 116359013 116359300 -85969047 + AluJb SINE Alu 1 288 -24 288 221 156 0 chr4 116364544 116364621 -85963726 + L2 LINE L2 3188 3276 -37 727 157 6 84 chr4 116364863 116365029 -85963318 + MLT1A1 LTR MaLR 1 153 -212 316 224 60 0 chr4 116365048 116365115 -85963232 + MLT1J2 LTR MaLR 397 467 0 278 369 107 8 chr4 116365211 116365333 -85963014 + L2 LINE L2 3137 3270 -2 486 325 24 76 chr4 116365775 116366024 -85962323 - L2 LINE L2 -38 3234 2999 1504 167 23 30 chr4 116366683 116366946 -85961401 - AluJo SINE Alu -30 282 22 1244 178 0 29 chr4 116367355 116367597 -85960750 - MER46A DNA MER2_type 0 236 2 2618 206 10 2 chr4 116367810 116368324 -85960023 + LTR53 LTR ERVL 2 519 0 2095 154 0 20 chr4 116368382 116368725 -85959622 + MER1B DNA MER1_type 2 337 0 270 282 203 61 chr4 116369609 116369722 -85958625 - L2 LINE L2 0 3272 3128 1968 104 4 4 chr4 116369722 116369982 -85958365 + AluSc SINE Alu 34 293 -16 270 282 203 61 chr4 116369982 116370031 -85958316 - L2 LINE L2 -144 3128 3087 1325 222 68 53 chr4 116370174 116370629 -85957718 + MLT1C LTR MaLR 6 467 0 268 276 75 52 chr4 116370734 116370868 -85957479 + MIR3 SINE MIR 13 149 -59 312 313 15 69 chr4 116371986 116372117 -85956230 + MIR SINE MIR 20 143 -119 2390 75 0 35 chr4 116372122 116372440 -85955907 + AluY SINE Alu 1 307 -4 189 107 0 0 chr4 116373970 116373998 -85954349 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 650 264 0 0 chr4 116374015 116374155 -85954192 + MIR SINE MIR 91 230 -32 186 133 0 0 chr4 116374155 116374185 -85954162 + (ATG)n Simple_repeat Simple_repeat 2 31 0 26 64 0 0 chr4 116374207 116374254 -85954093 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr4 116375059 116375080 -85953267 + AT_rich Low_complexity Low_complexity 1 21 0 4194 140 17 24 chr4 116375149 116375906 -85952441 - L1MA8 LINE L1 -3 6288 5537 670 316 84 4 chr4 116378295 116378558 -85949789 - L3 LINE CR1 -2 1575 1292 371 333 28 28 chr4 116378921 116379062 -85949285 - MIR SINE MIR -91 171 31 689 183 57 172 chr4 116379160 116379597 -85948750 + MLT1B LTR MaLR 1 387 -3 261 0 0 0 chr4 116380780 116380809 -85947538 + (CA)n Simple_repeat Simple_repeat 2 30 0 748 247 126 0 chr4 116380935 116381166 -85947181 + MIR SINE MIR 3 262 0 186 71 0 0 chr4 116381426 116381454 -85946893 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 673 272 56 49 chr4 116382546 116382849 -85945498 - L1ME4a LINE L1 -218 5903 5595 2179 120 0 0 chr4 116382849 116383150 -85945197 + AluSx SINE Alu 5 305 -7 673 272 56 49 chr4 116383150 116383272 -85945075 - L1ME4a LINE L1 -526 5595 5475 227 170 0 19 chr4 116383975 116384028 -85944319 + GA-rich Low_complexity Low_complexity 4 55 0 1979 164 39 31 chr4 116385975 116386152 -85942195 + MLT1B LTR MaLR 1 175 -215 2195 99 3 10 chr4 116386152 116386456 -85941891 + AluY SINE Alu 1 302 -9 1979 164 39 31 chr4 116386456 116386663 -85941684 + MLT1B LTR MaLR 175 388 -2 268 313 102 27 chr4 116388017 116388164 -85940183 - L2 LINE L2 -4 3309 3152 548 229 46 33 chr4 116388287 116388440 -85939907 + MLT1H LTR MaLR 2 156 -393 1420 77 58 0 chr4 116388483 116388691 -85939656 + L1MA1 LINE L1 6079 6298 -4 22 0 0 0 chr4 116388691 116388713 -85939634 + AT_rich Low_complexity Low_complexity 1 22 0 186 222 0 0 chr4 116389985 116390039 -85938308 + (TA)n Simple_repeat Simple_repeat 1 54 0 1798 161 0 27 chr4 116390615 116390907 -85937440 + AluJo SINE Alu 1 284 -28 584 51 57 34 chr4 116390908 116391083 -85937264 + (TA)n Simple_repeat Simple_repeat 2 180 0 35 24 0 0 chr4 116391083 116391125 -85937222 + AT_rich Low_complexity Low_complexity 1 42 0 315 0 0 0 chr4 116391874 116391909 -85936438 + (CA)n Simple_repeat Simple_repeat 1 35 0 664 217 8 0 chr4 116392895 116393024 -85935323 - FLAM_C SINE Alu -3 130 1 1162 284 69 23 chr4 116393220 116393611 -85934736 + MLT1I LTR MaLR 1 409 0 1849 125 32 4 chr4 116394050 116394331 -85934016 - AluSx SINE Alu -23 289 1 255 318 130 45 chr4 116394346 116394569 -85933778 + L2 LINE L2 2069 2310 -1004 5135 239 28 16 chr4 116394826 116396307 -85932040 + L1M4 LINE L1 3746 5244 -902 270 304 23 0 chr4 116396326 116396497 -85931850 + (TA)n Simple_repeat Simple_repeat 1 175 0 1571 251 80 91 chr4 116396567 116397748 -85930599 + HAL1 LINE L1 1260 2427 -80 938 289 98 11 chr4 116398843 116399311 -85929036 + MLT1J LTR MaLR 1 509 -2 250 260 14 14 chr4 116401909 116401982 -85926365 - L2 LINE L2 0 3272 3200 25 31 0 0 chr4 116402058 116402090 -85926257 + AT_rich Low_complexity Low_complexity 1 32 0 195 379 0 0 chr4 116402474 116402561 -85925786 + L2 LINE L2 3226 3312 -1 1992 143 7 0 chr4 116403350 116403644 -85924703 + AluSx SINE Alu 1 296 -16 2517 121 12 12 chr4 116404368 116404772 -85923575 + L1PA15 LINE L1 5761 6164 -1 516 146 16 8 chr4 116404786 116404909 -85923438 + (TA)n Simple_repeat Simple_repeat 2 125 0 25 31 0 0 chr4 116405184 116405216 -85923131 + AT_rich Low_complexity Low_complexity 1 32 0 327 263 93 25 chr4 116405483 116405601 -85922746 + MIR SINE MIR 16 141 -67 23 0 0 0 chr4 116405608 116405631 -85922716 + AT_rich Low_complexity Low_complexity 1 23 0 721 291 91 39 chr4 116405699 116406171 -85922176 - MLT1G3 LTR MaLR 0 595 13 1505 256 105 24 chr4 116406888 116407353 -85920994 + MLT1G1 LTR MaLR 79 581 -14 27 29 0 0 chr4 116408109 116408143 -85920204 + AT_rich Low_complexity Low_complexity 1 34 0 189 74 0 0 chr4 116408177 116408204 -85920143 + (TA)n Simple_repeat Simple_repeat 1 27 0 339 327 19 0 chr4 116409289 116409396 -85918951 + L2 LINE L2 3160 3268 -4 415 266 94 82 chr4 116409563 116409830 -85918517 + L2 LINE L2 3044 3313 0 542 62 0 12 chr4 116409830 116409910 -85918437 + (GGAA)n Simple_repeat Simple_repeat 4 82 0 1701 213 73 18 chr4 116409957 116410398 -85917949 + MLT1C LTR MaLR 3 467 0 30 27 0 0 chr4 116410842 116410879 -85917468 + AT_rich Low_complexity Low_complexity 1 37 0 183 302 79 43 chr4 116410975 116411114 -85917233 - MIR SINE MIR -2 260 117 1385 158 81 57 chr4 116411194 116411529 -85916818 + MER2 DNA MER2_type 2 344 0 355 330 10 0 chr4 116411542 116411645 -85916702 - MIR SINE MIR -156 106 3 225 0 0 0 chr4 116411937 116411962 -85916385 + (T)n Simple_repeat Simple_repeat 1 25 0 267 250 83 0 chr4 116412768 116412840 -85915507 - MIR3 SINE MIR -13 195 118 180 0 0 0 chr4 116415427 116415447 -85912900 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2306 98 0 0 chr4 116415636 116415941 -85912406 - AluSc SINE Alu -4 305 1 25 65 0 0 chr4 116416095 116416141 -85912206 + AT_rich Low_complexity Low_complexity 1 46 0 187 298 0 18 chr4 116416673 116416730 -85911617 - L3b LINE CR1 -192 1391 1336 279 239 184 30 chr4 116417534 116417735 -85910612 - MARNA DNA Mariner -66 520 289 268 301 11 0 chr4 116417946 116418039 -85910308 + MARNA DNA Mariner 479 572 -14 2293 92 0 0 chr4 116418237 116418532 -85909815 + AluSp SINE Alu 1 295 -18 405 303 30 23 chr4 116418555 116418687 -85909660 - MER5A DNA MER1_type -53 136 4 3074 112 74 1 chr4 116418790 116419322 -85909025 + L1PB4 LINE L1 5221 5789 -367 249 276 35 14 chr4 116419337 116419482 -85908865 + (TA)n Simple_repeat Simple_repeat 1 148 0 297 0 0 0 chr4 116419576 116419609 -85908738 + (CA)n Simple_repeat Simple_repeat 2 34 0 2089 148 22 14 chr4 116419609 116419968 -85908379 + L1PB4 LINE L1 5794 6155 -1 12272 146 13 21 chr4 116420133 116422232 -85906115 - Ricksha_c DNA DNA -13 2033 10 2723 225 35 3 chr4 116422824 116423388 -85904959 + MER82 DNA MER2_type 7 588 -65 1998 164 99 8 chr4 116423395 116423779 -85904568 - MSTA LTR MaLR -9 419 1 388 171 14 0 chr4 116423780 116423850 -85904497 + MER82 DNA MER2_type 582 652 -1 38 52 0 13 chr4 116424422 116424438 -85903909 + AT_rich Low_complexity Low_complexity 1 16 -60 2117 108 0 10 chr4 116424438 116424735 -85903612 + AluSc SINE Alu 1 294 -15 38 52 0 13 chr4 116424735 116424795 -85903552 + AT_rich Low_complexity Low_complexity 16 76 0 191 296 42 0 chr4 116424920 116424991 -85903356 - MIR3 SINE MIR -6 202 129 311 368 60 28 chr4 116425311 116425561 -85902786 + MIR SINE MIR 2 259 -3 1228 183 20 28 chr4 116428212 116428464 -85899883 + L1M4 LINE L1 18 267 -6275 21 57 0 0 chr4 116428564 116428599 -85899748 + AT_rich Low_complexity Low_complexity 1 35 0 2343 233 52 50 chr4 116428614 116429310 -85899037 + L1M4 LINE L1 271 967 -5575 27 49 0 0 chr4 116430597 116430638 -85897709 + AT_rich Low_complexity Low_complexity 1 41 0 21 57 0 0 chr4 116431201 116431236 -85897111 + AT_rich Low_complexity Low_complexity 1 35 0 2900 162 35 11 chr4 116431237 116431805 -85896542 - L1MB3 LINE L1 -10 6173 5592 965 155 0 0 chr4 116432707 116432849 -85895498 - Tigger3b DNA MER2_type 0 1232 1091 207 179 36 36 chr4 116432849 116432933 -85895414 + (TTATA)n Simple_repeat Simple_repeat 1 84 0 327 212 0 0 chr4 116432940 116433025 -85895322 + (TA)n Simple_repeat Simple_repeat 1 85 0 5459 135 98 10 chr4 116433027 116434027 -85894320 - Tigger3b DNA MER2_type -143 1088 1 251 253 329 32 chr4 116434242 116434400 -85893947 + MIR SINE MIR 1 205 -57 272 305 12 12 chr4 116434756 116434838 -85893509 + MIR3 SINE MIR 125 206 -2 1287 162 50 8 chr4 116436376 116436635 -85891712 - L1MA9 LINE L1 -38 6274 6005 23 0 0 0 chr4 116437005 116437028 -85891319 + AT_rich Low_complexity Low_complexity 1 23 0 1269 214 41 0 chr4 116437065 116437336 -85891011 + L3b LINE CR1 1132 1413 -170 220 200 0 0 chr4 116437693 116437733 -85890614 + GA-rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr4 116438486 116438508 -85889839 + AT_rich Low_complexity Low_complexity 1 22 0 467 206 15 66 chr4 116438674 116438810 -85889537 + MER94 DNA DNA 5 133 -1 189 74 0 0 chr4 116439589 116439616 -85888731 + (A)n Simple_repeat Simple_repeat 1 27 0 26 82 0 0 chr4 116440187 116440248 -85888099 + AT_rich Low_complexity Low_complexity 1 61 0 1777 105 91 14 chr4 116440661 116440937 -85887410 + AluSx SINE Alu 1 297 -15 275 337 191 14 chr4 116441227 116441589 -85886758 - L2 LINE L2 -925 2389 1964 191 152 22 0 chr4 116441689 116441735 -85886612 + (TA)n Simple_repeat Simple_repeat 1 47 0 203 354 0 0 chr4 116442549 116442614 -85885733 - L2 LINE L2 -4 3309 3245 296 378 0 20 chr4 116442685 116442783 -85885564 + L2 LINE L2 3000 3095 -177 286 367 36 7 chr4 116443620 116443759 -85884588 + MIR3 SINE MIR 1 143 -65 1799 230 88 20 chr4 116443909 116443949 -85884398 - MLT2B1 LTR ERVL 0 520 484 243 0 0 0 chr4 116443949 116443976 -85884371 + (CA)n Simple_repeat Simple_repeat 2 28 0 1799 230 88 20 chr4 116443976 116444422 -85883925 - MLT2B1 LTR ERVL -36 484 1 13698 148 22 6 chr4 116444422 116446610 -85881737 - ERVL-B1 LTR ERVL -7 5757 3534 605 200 14 14 chr4 116446604 116446749 -85881598 - HERVL-B1 LTR ERVL -5509 145 1 * 1942 211 124 13 chr4 116446749 116447217 -85881130 - MLT2B1 LTR ERVL 0 520 1 2530 59 0 0 chr4 116447385 116447688 -85880659 + AluY SINE Alu 1 303 -8 336 232 0 130 chr4 116447834 116447972 -85880375 - MIR SINE MIR -69 193 74 486 108 0 0 chr4 116448042 116448116 -85880231 + (TA)n Simple_repeat Simple_repeat 2 75 0 286 309 40 56 chr4 116448153 116448279 -85880068 + L2 LINE L2 3141 3264 -8 270 255 0 0 chr4 116448486 116448537 -85879810 - L2 LINE L2 -12 3260 3210 324 0 0 0 chr4 116449665 116449701 -85878646 + (TG)n Simple_repeat Simple_repeat 2 37 0 27 0 0 0 chr4 116450070 116450097 -85878250 + AT_rich Low_complexity Low_complexity 1 27 0 461 335 55 6 chr4 116450236 116450418 -85877929 + MIR3 SINE MIR 9 199 -9 219 291 212 24 chr4 116451141 116451306 -85877041 - MIR SINE MIR -44 218 23 193 383 114 10 chr4 116451655 116451848 -85876499 + L2 LINE L2 2545 2757 -557 671 204 61 41 chr4 116451943 116452139 -85876208 + MIR SINE MIR 63 262 0 293 304 14 0 chr4 116452257 116452326 -85876021 - MIR SINE MIR -188 74 5 2277 106 0 0 chr4 116454073 116454375 -85873972 - AluSx SINE Alu -10 302 1 1618 167 20 37 chr4 116454820 116455120 -85873227 + AluSx SINE Alu 1 295 -17 2518 66 0 0 chr4 116455272 116455576 -85872771 - AluY SINE Alu -7 304 1 2372 87 0 0 chr4 116455811 116456109 -85872238 + AluSx SINE Alu 1 298 -14 2080 127 3 0 chr4 116456427 116456736 -85871611 + AluSx SINE Alu 1 310 0 324 313 94 0 chr4 116457055 116457183 -85871164 + L3b LINE CR1 1295 1434 -149 338 281 82 67 chr4 116457449 116457584 -85870763 - L2 LINE L2 0 3272 3136 464 323 110 36 chr4 116457894 116458284 -85870063 - L2 LINE L2 -572 2742 2324 21 57 0 0 chr4 116458437 116458472 -85869875 + AT_rich Low_complexity Low_complexity 1 35 0 450 0 0 0 chr4 116459098 116459148 -85869199 + (TG)n Simple_repeat Simple_repeat 2 51 0 469 276 144 11 chr4 116459691 116459865 -85868482 + MIR SINE MIR 66 262 0 1210 169 13 21 chr4 116461197 116461434 -85866913 + MER46A DNA MER2_type 1 235 -1 6923 24 0 0 chr4 116462511 116463314 -85865033 - L1PA2 LINE L1 0 6155 5353 6658 34 0 0 chr4 116463309 116464105 -85864242 + L1P LINE L1 3650 4445 -1701 * 310 282 0 0 chr4 116464307 116464378 -85863969 - L2 LINE L2 0 3313 3243 497 300 117 9 chr4 116464455 116464685 -85863662 - MIR SINE MIR -4 258 4 1992 140 17 0 chr4 116465540 116465833 -85862514 + AluJb SINE Alu 5 302 -10 210 347 14 0 chr4 116465985 116466057 -85862290 - MIR3 SINE MIR -17 191 119 198 326 121 37 chr4 116466295 116466485 -85861862 - L2 LINE L2 -194 3078 2873 262 257 35 62 chr4 116467334 116467447 -85860900 + MIR SINE MIR 88 197 -65 208 267 0 50 chr4 116467530 116467590 -85860757 - MIR3 SINE MIR -11 197 141 2392 83 0 3 chr4 116469708 116470009 -85858338 + AluSx SINE Alu 1 300 -12 227 245 38 0 chr4 116470026 116470079 -85858268 + L2 LINE L2 3253 3307 -6 348 205 25 57 chr4 116470099 116470221 -85858126 - MER110 LTR ERV1 -51 440 323 596 373 97 15 chr4 116470302 116470758 -85857589 - L3 LINE CR1 -117 1460 968 2218 98 0 7 chr4 116471433 116471729 -85856618 + AluSc SINE Alu 1 294 -15 1710 189 24 46 chr4 116472361 116472732 -85855615 - MLT1A1 LTR MaLR -2 363 1 1079 200 148 12 chr4 116472907 116473157 -85855190 + AluJo SINE Alu 1 284 -18 382 277 67 24 chr4 116474042 116474230 -85854117 + L1MC4 LINE L1 7533 7711 -331 1894 112 26 8 chr4 116474230 116474498 -85853849 - AluSg SINE Alu -10 300 28 382 277 67 24 chr4 116474498 116474572 -85853775 + L1MC4 LINE L1 7711 7918 -124 1643 151 3 56 chr4 116476845 116477129 -85851218 - AluJo SINE Alu -30 282 14 252 229 14 14 chr4 116477539 116477609 -85850738 - MER103 DNA DNA -1 165 96 2162 123 7 16 chr4 116477722 116478030 -85850317 + AluSx SINE Alu 1 305 -7 780 343 111 58 chr4 116478077 116479090 -85849257 + L3 LINE CR1 510 1575 -2 684 171 65 6 chr4 116479171 116479341 -85849006 - MER63 DNA MER1_type 0 1060 881 362 237 31 0 chr4 116479338 116479435 -85848912 - MER63 DNA MER1_type -302 758 659 * 180 97 0 0 chr4 116479437 116479468 -85848879 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 870 246 29 5 chr4 116480140 116480347 -85848000 + MER20 DNA MER1_type 2 213 -6 22 56 0 0 chr4 116480949 116480985 -85847362 + AT_rich Low_complexity Low_complexity 1 36 0 23 78 0 0 chr4 116481063 116481114 -85847233 + AT_rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr4 116482075 116482100 -85846247 + AT_rich Low_complexity Low_complexity 1 25 0 393 75 0 0 chr4 116482542 116482595 -85845752 + (CA)n Simple_repeat Simple_repeat 2 54 0 1548 171 103 3 chr4 116482645 116483032 -85845315 + LTR37A LTR ERV1 1 426 0 1374 87 121 5 chr4 116484254 116484460 -85843887 + MER30 DNA MER1_type 1 230 0 186 333 0 42 chr4 116489631 116489703 -85838644 - L3b LINE CR1 -265 1318 1250 452 324 0 0 chr4 116490025 116490130 -85838217 + L2 LINE L2 3136 3240 -32 480 328 6 53 chr4 116490148 116490319 -85838028 - MIR3 SINE MIR -23 185 23 23 33 0 0 chr4 116490681 116490711 -85837636 + AT_rich Low_complexity Low_complexity 1 30 0 251 143 18 36 chr4 116490792 116490848 -85837499 + L1MB8 LINE L1 6041 6095 -83 285 345 12 0 chr4 116491202 116491286 -85837061 + MIR SINE MIR 53 137 -71 279 79 0 0 chr4 116491429 116491467 -85836880 + (T)n Simple_repeat Simple_repeat 1 38 0 401 330 8 8 chr4 116491467 116491585 -85836762 - MIR SINE MIR -122 140 23 468 224 157 15 chr4 116491630 116491764 -85836583 + MIR SINE MIR 49 201 -61 723 173 34 125 chr4 116497563 116497771 -85830576 + MER5A DNA MER1_type 1 189 0 735 281 150 21 chr4 116497982 116498409 -85829938 + L2 LINE L2 2043 2524 -790 1891 215 77 4 chr4 116499095 116499564 -85828783 + MLT1D LTR MaLR 1 503 -2 222 37 0 0 chr4 116499941 116499968 -85828379 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1686 155 34 0 chr4 116499978 116500242 -85828105 - AluJb SINE Alu -39 273 1 2423 77 6 6 chr4 116500758 116501071 -85827276 - AluSp SINE Alu 0 313 1 647 263 89 22 chr4 116501759 116501983 -85826364 + MIR SINE MIR 14 252 -10 27 0 0 0 chr4 116502004 116502031 -85826316 + AT_rich Low_complexity Low_complexity 1 27 0 769 179 56 138 chr4 116502221 116502341 -85826006 - L1ME2 LINE L1 -179 5985 5857 1787 171 20 10 chr4 116502341 116502634 -85825713 - AluJo SINE Alu -16 296 1 769 179 56 138 chr4 116502634 116502853 -85825494 - L1ME2 LINE L1 -307 5857 5674 612 335 88 17 chr4 116502858 116503232 -85825115 + L1ME LINE L1 4622 5030 -1116 7455 123 31 22 chr4 116503232 116503635 -85824712 + HSMAR2 DNA Mariner 2 400 -902 4707 165 56 8 chr4 116503635 116504497 -85823850 + MER4D LTR ERV1 1 903 0 7455 123 31 22 chr4 116504497 116505382 -85822965 + HSMAR2 DNA Mariner 400 1302 0 608 271 23 17 chr4 116505383 116505734 -85822613 + L1ME LINE L1 5029 5381 -765 4350 114 11 0 chr4 116505734 116506382 -85821965 - L1PA13 LINE L1 -6 6157 5503 744 183 7 7 chr4 116506386 116506528 -85821819 + LTR28 LTR ERV1 1 142 -878 591 216 113 14 chr4 116506593 116506849 -85821498 + MER52A LTR ERV1 275 1232 -137 4111 193 36 10 chr4 116506990 116507855 -85820492 + LTR28-int LTR ERV1 1 887 -6204 4595 151 19 54 chr4 116507877 116508978 -85819369 + LTR28-int LTR ERV1 1003 2330 -4761 * 29142 111 13 8 chr4 116508967 116510937 -85817410 + LTR28-int LTR ERV1 2744 4702 -2389 2334 81 3 10 chr4 116510937 116511247 -85817100 + AluY SINE Alu 1 308 -3 1622 72 14 0 chr4 116511251 116511460 -85816887 + AluY SINE Alu 86 297 -14 29142 111 13 8 chr4 116511460 116513810 -85814537 + LTR28-int LTR ERV1 4704 7091 0 826 231 0 6 chr4 116513810 116513983 -85814364 + LTR28 LTR ERV1 1 172 -848 600 211 40 64 chr4 116514026 116514275 -85814072 + MER52A LTR ERV1 340 1232 -12 1468 58 14 0 chr4 116514359 116514567 -85813780 - L1P4 LINE L1 -650 5513 5303 691 248 50 4 chr4 116514565 116514803 -85813544 + L1ME LINE L1 5369 5617 -553 * 1117 156 173 90 chr4 116514872 116515218 -85813129 - THE1C LTR MaLR 0 375 1 2389 65 188 136 chr4 116515221 116515399 -85812948 + LTR12 LTR ERV1 1 168 -546 4035 36 0 0 chr4 116515399 116515875 -85812472 + L1PA5 LINE L1 5671 6146 -8 2389 65 188 136 chr4 116515875 116516248 -85812099 + LTR12 LTR ERV1 168 581 -133 9708 119 22 36 chr4 116516251 116517849 -85810498 - THE1C-int LTR MaLR -2 1578 3 1711 154 69 36 chr4 116517851 116518214 -85810133 - THE1C LTR MaLR 0 375 1 409 283 50 13 chr4 116518385 116518544 -85809803 + MLT1-int LTR MaLR 436 600 -771 2182 149 37 25 chr4 116519379 116519620 -85808727 + LTR69 LTR ERVL 1 238 -350 1612 182 45 24 chr4 116519620 116519911 -85808436 + AluJo SINE Alu 1 297 -15 2182 149 37 25 chr4 116519911 116520210 -85808137 + LTR69 LTR ERVL 238 588 0 1362 254 42 6 chr4 116520274 116520628 -85807719 + MLT1F LTR MaLR 176 542 0 399 263 81 45 chr4 116520748 116520946 -85807401 - L1ME3A LINE L1 -285 5954 5750 2674 186 68 4 chr4 116520973 116521501 -85806846 - MLT1F1 LTR MaLR -5 562 1 2412 67 3 0 chr4 116521536 116521848 -85806499 + L1PA10 LINE L1 5852 6164 -4 434 251 27 27 chr4 116521861 116522011 -85806336 - L1ME3A LINE L1 -562 5669 5539 425 328 72 34 chr4 116522102 116522330 -85806017 - L2 LINE L2 -289 3024 2795 310 75 0 0 chr4 116522389 116522429 -85805918 - MER5B DNA MER1_type 0 178 139 565 278 88 10 chr4 116522709 116522903 -85805444 - L2 LINE L2 -2306 1008 800 259 250 36 48 chr4 116522938 116523022 -85805325 - MER5B DNA MER1_type -68 110 28 530 268 40 30 chr4 116523058 116523256 -85805091 - L2 LINE L2 -2504 810 611 22 0 0 0 chr4 116523361 116523383 -85804964 + AT_rich Low_complexity Low_complexity 1 22 0 1396 197 17 92 chr4 116523394 116524019 -85804328 + L1MB8 LINE L1 4916 5495 -689 379 189 7 20 chr4 116524019 116524167 -85804180 - MLT1A1 LTR MaLR -1 364 134 2602 173 15 51 chr4 116524213 116524506 -85803841 + L1MB8 LINE L1 5583 5844 -334 2523 53 0 3 chr4 116524506 116524808 -85803539 + AluY SINE Alu 1 301 -10 2602 173 15 51 chr4 116524808 116525126 -85803221 + L1MB8 LINE L1 5844 6172 -6 2290 194 63 23 chr4 116525191 116525764 -85802583 + L1MB5 LINE L1 5579 6174 0 593 298 31 42 chr4 116526688 116526977 -85801370 - MER115 DNA AcHobo -362 331 46 703 250 131 4 chr4 116527953 116528205 -85800142 + Charlie8 DNA MER1_type 1 284 -2133 4173 243 48 19 chr4 116529391 116530840 -85797507 - L1ME3A LINE L1 -844 5371 3880 752 231 53 45 chr4 116530872 116531629 -85796718 - L1MEc LINE L1 -2451 3764 3015 882 153 0 0 chr4 116531629 116531760 -85796587 + FLAM_C SINE Alu 3 133 0 752 231 53 45 chr4 116531760 116532297 -85796050 - L1MEc LINE L1 -3200 3015 2338 237 65 0 0 chr4 116532297 116532328 -85796019 + (TG)n Simple_repeat Simple_repeat 2 32 0 752 231 53 45 chr4 116532328 116532524 -85795823 - L1MEc LINE L1 -3877 2338 2145 36042 80 14 8 chr4 116533193 116539298 -85789049 + L1PA3 LINE L1 11 6154 -1 2987 62 3 5 chr4 116539317 116539706 -85788641 + L1PA6 LINE L1 5767 6154 0 2329 92 0 0 chr4 116541256 116541559 -85786788 + AluSg SINE Alu 1 303 -7 401 209 378 7 chr4 116542008 116542195 -85786152 + MIR SINE MIR 2 262 0 2071 169 17 8 chr4 116542214 116542576 -85785771 + MLT1A1 LTR MaLR 1 365 0 564 180 0 33 chr4 116543296 116543418 -85784929 - L1ME3A LINE L1 -5 6165 6048 1220 262 27 12 chr4 116543454 116543863 -85784484 - L1ME3A LINE L1 -215 5955 5541 370 121 0 15 chr4 116543887 116543953 -85784394 - MADE1 DNA Mariner 0 80 16 297 89 0 0 chr4 116544224 116544269 -85784078 + (CA)n Simple_repeat Simple_repeat 1 45 0 2447 80 0 0 chr4 116544878 116545189 -85783158 + AluY SINE Alu 1 311 0 29 0 0 0 chr4 116545193 116545222 -85783125 + AT_rich Low_complexity Low_complexity 1 29 0 267 104 0 0 chr4 116545483 116545531 -85782816 + (TC)n Simple_repeat Simple_repeat 2 49 0 288 53 0 0 chr4 116545531 116545569 -85782778 + (CA)n Simple_repeat Simple_repeat 1 38 0 272 170 0 0 chr4 116546827 116546874 -85781473 - MER116 DNA Mariner -6 74 28 27 0 0 0 chr4 116546897 116546924 -85781423 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr4 116547007 116547044 -85781303 + AT_rich Low_complexity Low_complexity 1 37 0 462 279 78 59 chr4 116547227 116547368 -85780979 + HAL1 LINE L1 1925 2073 -434 2550 46 3 0 chr4 116547368 116547675 -85780672 + AluY SINE Alu 1 308 -3 462 279 78 59 chr4 116547675 116547752 -85780595 + HAL1 LINE L1 2073 2147 -360 22 35 0 0 chr4 116548200 116548229 -85780118 + AT_rich Low_complexity Low_complexity 1 29 0 944 272 39 16 chr4 116549337 116549591 -85778756 + MIR SINE MIR 3 262 0 303 49 0 0 chr4 116549632 116549673 -85778674 + (CA)n Simple_repeat Simple_repeat 1 41 0 2272 60 43 0 chr4 116550272 116550554 -85777793 - AluY SINE Alu -13 298 5 2053 125 7 17 chr4 116551476 116551771 -85776576 + AluSx SINE Alu 1 292 -20 681 204 0 0 chr4 116551798 116551911 -85776436 - MER81 DNA DNA 0 114 2 2974 161 21 41 chr4 116551927 116552491 -85775856 + MLT2B3 LTR ERVL 2 554 0 2095 123 0 0 chr4 116553698 116554007 -85774340 + AluSx SINE Alu 1 309 0 2202 106 7 0 chr4 116554167 116554460 -85773887 - AluSc SINE Alu -12 297 3 1004 252 25 66 chr4 116554505 116554898 -85773449 + LTR33 LTR ERVL 145 521 0 1448 233 62 33 chr4 116555528 116556013 -85772334 + MLT1J LTR MaLR 5 503 -8 240 224 177 68 chr4 116556014 116556161 -85772186 + L2 LINE L2 3151 3313 0 735 296 70 4 chr4 116556256 116556499 -85771848 + MIR SINE MIR 2 260 -2 2646 206 79 5 chr4 116556512 116557119 -85771228 - MER82 DNA MER2_type 0 653 2 264 30 0 0 chr4 116557122 116557155 -85771192 + (TG)n Simple_repeat Simple_repeat 2 34 0 2223 107 0 0 chr4 116557179 116557468 -85770879 + AluSx SINE Alu 1 289 -23 21 36 0 0 chr4 116557961 116557989 -85770358 + AT_rich Low_complexity Low_complexity 1 28 0 407 360 31 44 chr4 116558037 116558128 -85770219 + MIR SINE MIR 23 114 -148 2102 130 0 0 chr4 116558128 116558421 -85769926 - AluSx SINE Alu -4 308 16 407 360 31 44 chr4 116558421 116558557 -85769790 + MIR SINE MIR 114 247 -15 3582 66 19 0 chr4 116558740 116559209 -85769138 - L1PA8 LINE L1 -6 6166 5689 335 317 0 0 chr4 116559407 116559511 -85768836 - L2 LINE L2 0 3313 3210 223 332 164 37 chr4 116560077 116560345 -85768002 - L2 LINE L2 -167 3105 2804 21 0 0 0 chr4 116561577 116561598 -85766749 + AT_rich Low_complexity Low_complexity 1 21 0 288 252 15 0 chr4 116561685 116561758 -85766589 + Zaphod DNA AcHobo 2 75 -618 513 263 90 17 chr4 116561773 116562054 -85766293 + MER115 DNA AcHobo 130 494 -199 * 561 259 7 0 chr4 116562053 116562188 -85766159 + Zaphod DNA AcHobo 3895 4030 -1 2089 148 0 0 chr4 116563635 116563946 -85764401 - AluSx SINE Alu -1 311 1 1798 131 10 67 chr4 116564069 116564381 -85763966 + AluJo SINE Alu 1 294 -18 342 0 0 0 chr4 116565522 116565560 -85762787 + (TG)n Simple_repeat Simple_repeat 1 38 0 211 316 0 0 chr4 116565581 116565638 -85762709 - MIR SINE MIR -4 258 202 * 578 291 8 0 chr4 116565636 116565770 -85762577 - L2 LINE L2 0 3313 3179 508 326 92 45 chr4 116565954 116566334 -85762013 - L2 LINE L2 -453 2861 2464 1423 160 33 73 chr4 116567813 116568113 -85760234 - AluJo SINE Alu -24 288 1 334 174 12 23 chr4 116568294 116568380 -85759967 + GA-rich Low_complexity Low_complexity 4 88 0 585 239 164 49 chr4 116568487 116568713 -85759634 - MIR SINE MIR 0 262 11 227 140 0 100 chr4 116568730 116568780 -85759567 + MER5C DNA MER1_type 1 45 -279 384 22 0 0 chr4 116568848 116568893 -85759454 + (TTA)n Simple_repeat Simple_repeat 2 46 0 2217 103 0 26 chr4 116569008 116569310 -85759037 - AluSx SINE Alu -16 296 3 181 283 0 17 chr4 116569480 116569540 -85758807 - MIR SINE MIR -169 93 35 2161 128 0 0 chr4 116569737 116570042 -85758305 - AluSx SINE Alu -7 305 1 216 252 280 0 chr4 116570426 116570533 -85757814 - L3 LINE CR1 -4 1573 1437 511 284 89 6 chr4 116570558 116570727 -85757620 + MIR SINE MIR 28 210 -52 248 291 25 0 chr4 116570768 116570847 -85757500 - L3 LINE CR1 -530 1047 967 864 274 96 57 chr4 116570911 116571451 -85756896 - L2 LINE L2 -209 3104 2534 505 322 62 5 chr4 116571451 116571662 -85756685 - L2 LINE L2 -1274 2040 1818 1030 247 110 15 chr4 116571662 116572116 -85756231 + L1MEc LINE L1 41 537 -5859 1803 265 67 30 chr4 116572117 116572716 -85755631 - L2 LINE L2 -1624 1690 1070 704 316 212 30 chr4 116572714 116573290 -85755057 - L3 LINE CR1 -615 962 282 * 2359 103 0 0 chr4 116573561 116573863 -85754484 - AluSg SINE Alu -8 302 1 2241 99 0 3 chr4 116573950 116574243 -85754104 + AluSg SINE Alu 1 292 -18 284 281 65 7 chr4 116574398 116574537 -85753810 + MLT1L LTR MaLR 387 533 -82 343 270 96 31 chr4 116575281 116575455 -85752892 + MIR SINE MIR 31 212 -50 707 273 33 16 chr4 116575798 116575981 -85752366 - MER63A DNA MER1_type -24 186 1 180 0 0 0 chr4 116576031 116576051 -85752296 + (CAT)n Simple_repeat Simple_repeat 1 20 0 2554 71 0 0 chr4 116576072 116576383 -85751964 + AluY SINE Alu 1 311 0 765 239 13 7 chr4 116576538 116576693 -85751654 - MER5A DNA MER1_type -4 185 30 262 299 0 0 chr4 116576970 116577037 -85751310 + MIR3 SINE MIR 98 164 -44 6327 212 94 57 chr4 116577499 116579191 -85749156 + MER52A LTR ERV1 1 1755 0 264 391 0 0 chr4 116579227 116579314 -85749033 + L2 LINE L2 3200 3286 -27 198 0 0 0 chr4 116579317 116579339 -85749008 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 844 247 92 44 chr4 116579692 116580008 -85748339 - LTR16C LTR ERVL -12 479 149 198 0 0 0 chr4 116580308 116580330 -85748017 + (T)n Simple_repeat Simple_repeat 1 22 0 3616 108 25 22 chr4 116580332 116580822 -85747525 - LTR9B LTR ERV1 -88 556 62 2183 71 12 86 chr4 116580822 116581160 -85747187 + AluSp SINE Alu 1 313 0 3616 108 25 22 chr4 116581160 116581223 -85747124 - LTR9B LTR ERV1 -582 62 1 3034 118 16 29 chr4 116581224 116581674 -85746673 - HUERS-P3b LTR ERV1 -7 7411 6968 206 352 11 11 chr4 116581838 116581926 -85746421 + L2 LINE L2 3225 3312 -1 203 274 27 55 chr4 116582386 116582459 -85745888 + L2 LINE L2 3182 3252 -20 263 306 56 28 chr4 116583830 116583938 -85744409 + L3 LINE CR1 1462 1572 -5 344 343 20 7 chr4 116584956 116585102 -85743245 - MIR SINE MIR -108 154 7 196 329 100 47 chr4 116585547 116585717 -85742630 + MIR3 SINE MIR 20 198 -10 1722 131 13 50 chr4 116585926 116586224 -85742123 - THE1B LTR MaLR -77 287 1 1398 75 5 0 chr4 116586224 116586411 -85741936 - THE1B-int LTR MaLR 0 1580 1393 421 270 0 0 chr4 116586411 116586523 -85741824 + FLAM_A SINE Alu 28 139 0 242 273 0 0 chr4 116586549 116586615 -85741732 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 464 232 14 28 chr4 116586615 116586757 -85741590 + L1MC4 LINE L1 7902 8041 -1 2562 55 0 0 chr4 116586904 116587215 -85741132 - AluY SINE Alu 0 311 1 621 280 47 9 chr4 116587438 116587810 -85740537 - LTR16C LTR ERVL 0 491 73 249 269 30 0 chr4 116588109 116588176 -85740171 + MLT1K LTR MaLR 504 572 -16 1956 142 46 16 chr4 116589360 116589683 -85738664 + MER1B DNA MER1_type 5 337 0 443 257 0 0 chr4 116589914 116590027 -85738320 + MIR SINE MIR 102 214 -48 2154 138 72 120 chr4 116590027 116590206 -85738141 + L1MB3 LINE L1 5652 5838 -345 977 122 0 0 chr4 116590206 116590337 -85738010 + FLAM_C SINE Alu 1 131 -2 2154 138 72 120 chr4 116590337 116590369 -85737978 + L1MB3 LINE L1 5838 5870 -313 1848 145 0 0 chr4 116590369 116590624 -85737723 + AluSx SINE Alu 1 255 -57 2154 138 72 120 chr4 116590624 116590970 -85737377 + L1MB3 LINE L1 5870 6183 0 207 270 45 45 chr4 116591374 116591463 -85736884 + MER5C DNA MER1_type 2 90 -234 425 260 40 30 chr4 116591646 116591846 -85736501 + L1ME LINE L1 4408 4609 -1537 21 0 0 0 chr4 116592188 116592209 -85736138 + AT_rich Low_complexity Low_complexity 1 21 0 546 279 75 39 chr4 116592210 116592518 -85735829 + L1ME LINE L1 5350 5668 -453 266 290 30 0 chr4 116592515 116592615 -85735732 + L1MEd LINE L1 2 104 -6015 * 206 156 22 0 chr4 116592622 116592667 -85735680 + GA-rich Low_complexity Low_complexity 1 46 0 516 248 110 50 chr4 116592814 116593118 -85735229 - L1MC4a LINE L1 -96 6025 5708 552 229 45 121 chr4 116593118 116593203 -85735144 - MLT1C LTR MaLR -170 297 207 2473 70 3 0 chr4 116593203 116593502 -85734845 - AluSp SINE Alu -13 300 1 552 229 45 121 chr4 116593502 116593732 -85734615 - MLT1C LTR MaLR -260 207 1 686 302 86 20 chr4 116593732 116593987 -85734360 - L2 LINE L2 -994 2320 2049 274 351 18 9 chr4 116593962 116594076 -85734271 + L2 LINE L2 3193 3307 -6 * 234 191 0 170 chr4 116594088 116594182 -85734165 - L2 LINE L2 -1246 2068 1991 1218 299 36 5 chr4 116594700 116595085 -85733262 + HAL1 LINE L1 4 400 -2107 2206 228 95 17 chr4 116595140 116595971 -85732376 + HAL1 LINE L1 561 1488 -1019 419 206 54 109 chr4 116595984 116596060 -85732287 + L1MC5 LINE L1 7709 7788 -173 1853 169 26 0 chr4 116596060 116596362 -85731985 + AluJo SINE Alu 1 310 -2 419 206 54 109 chr4 116596362 116596469 -85731878 + L1MC5 LINE L1 7788 7882 -79 674 192 45 19 chr4 116596529 116596685 -85731662 + HAL1 LINE L1 1467 1626 -881 381 329 14 7 chr4 116596685 116596831 -85731516 - L2 LINE L2 -1755 1559 1413 239 401 6 12 chr4 116596973 116597140 -85731207 - L2 LINE L2 -219 3053 2888 1578 156 7 22 chr4 116597151 116597420 -85730927 + AluJb SINE Alu 1 265 -47 2250 104 17 0 chr4 116597559 116597888 -85730459 + AluSx SINE Alu 1 518 -54 1182 77 6 16 chr4 116597888 116598070 -85730277 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2250 104 17 0 chr4 116598070 116598126 -85730221 + AluSx SINE Alu 518 572 0 209 225 0 0 chr4 116599672 116599712 -85728635 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 750 228 114 0 chr4 116601137 116601330 -85727017 + MER58C DNA MER1_type 1 215 0 1637 186 0 24 chr4 116601454 116601750 -85726597 + AluJo SINE Alu 1 289 -23 2283 91 0 10 chr4 116601763 116602059 -85726288 + AluSc SINE Alu 3 295 -14 390 267 128 11 chr4 116602076 116602256 -85726091 - MIR SINE MIR -49 213 13 308 366 93 18 chr4 116602360 116602815 -85725532 - L2 LINE L2 -219 3053 2565 1739 172 3 7 chr4 116603329 116603614 -85724733 + AluJo SINE Alu 1 284 -28 27 0 0 0 chr4 116603620 116603647 -85724700 + AT_rich Low_complexity Low_complexity 1 27 0 2202 84 28 0 chr4 116604028 116604315 -85724032 - AluSg SINE Alu -15 295 1 1775 87 0 0 chr4 116655535 116655754 -85672593 + AluSp SINE Alu 64 282 -31 2012 220 73 25 chr4 116655754 116656561 -85671786 + MER11B LTR ERVK 2 1114 -152 2272 173 38 38 chr4 116656690 116657238 -85671109 + MER11A LTR ERVK 719 1266 0 27 0 0 0 chr4 116657244 116657271 -85671076 + AT_rich Low_complexity Low_complexity 1 27 0 2514 247 76 15 chr4 116657290 116658289 -85670058 + L1MC3 LINE L1 5186 5403 -743 1657 201 39 18 chr4 116658291 116658679 -85669668 + L1MD3 LINE L1 6594 6989 -1006 1030 187 124 18 chr4 116658679 116658904 -85669443 + AluJo SINE Alu 34 282 -30 494 220 68 113 chr4 116658917 116659074 -85669273 + L1MD3 LINE L1 6983 7146 -849 1899 191 6 0 chr4 116659074 116659388 -85668959 + 7SLRNA srpRNA srpRNA 5 320 0 494 220 68 113 chr4 116659388 116659464 -85668883 + L1MD3 LINE L1 7146 7201 -794 2244 111 3 0 chr4 116659464 116659762 -85668585 - AluSg SINE Alu -11 299 1 494 220 68 113 chr4 116659762 116659836 -85668511 + L1MD3 LINE L1 7201 7277 -718 278 264 0 0 chr4 116659837 116659909 -85668438 + MLT1F1 LTR MaLR 1 72 -495 1683 174 14 14 chr4 116659920 116660207 -85668140 - AluJo SINE Alu -25 287 1 2320 191 29 71 chr4 116660207 116660317 -85668030 + L1MD3 LINE L1 7345 7458 -537 1147 185 108 51 chr4 116660317 116660610 -85667737 + MLT1A2 LTR MaLR 4 322 -52 1859 153 7 27 chr4 116660610 116660911 -85667436 + AluJb SINE Alu 3 297 -15 1147 185 108 51 chr4 116660911 116660968 -85667379 + MLT1A2 LTR MaLR 322 374 0 2320 191 29 71 chr4 116660968 116661407 -85666940 + L1MD3 LINE L1 7458 7864 -131 1454 94 47 38 chr4 116661407 116661619 -85666728 + AluSq SINE Alu 1 214 -99 2320 191 29 71 chr4 116661619 116661732 -85666615 + L1MD3 LINE L1 7864 7980 -15 287 402 0 0 chr4 116661797 116661919 -85666428 + L2 LINE L2 2682 2803 -511 1592 179 79 64 chr4 116661921 116662389 -85665958 + MLT1D LTR MaLR 31 505 0 389 337 72 72 chr4 116662929 116663291 -85665056 + L2 LINE L2 2906 3267 -5 2128 159 122 22 chr4 116663581 116664040 -85664307 - MLT1D LTR MaLR 0 505 1 265 271 17 59 chr4 116664065 116664183 -85664164 - HsTC2 DNA Tc2 -1772 126 14 1957 156 3 13 chr4 116664267 116664582 -85663765 + AluJo SINE Alu 1 312 0 2341 75 9 35 chr4 116664587 116664906 -85663441 + AluY SINE Alu 1 311 0 1725 147 39 4 chr4 116664934 116665213 -85663134 + AluJb SINE Alu 21 309 -3 21 36 0 0 chr4 116665593 116665621 -85662726 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr4 116665645 116665666 -85662681 + (A)n Simple_repeat Simple_repeat 1 21 0 2098 112 30 0 chr4 116665903 116666198 -85662149 - AluSq SINE Alu -9 304 1 821 167 0 0 chr4 116666597 116666723 -85661624 + FLAM_C SINE Alu 1 126 -7 378 336 113 40 chr4 116666894 116667141 -85661206 - L2 LINE L2 -1841 1473 1209 3844 117 53 0 chr4 116667815 116668420 -85659927 + MER39B LTR ERV1 14 650 -3 3769 236 39 33 chr4 116668424 116668505 -85659842 - L1M4 LINE L1 -1052 5905 5826 1981 118 35 3 chr4 116668505 116668793 -85659554 - AluSq SINE Alu -16 297 1 3769 236 39 33 chr4 116668793 116670060 -85658287 - L1M4 LINE L1 -1131 5826 4550 295 260 52 0 chr4 116670069 116670146 -85658201 - Charlie1a DNA MER1_type -1002 453 373 965 257 16 12 chr4 116670185 116670430 -85657917 - Charlie1a DNA MER1_type -1209 246 1 510 231 0 8 chr4 116670441 116670558 -85657789 - MLT1D LTR MaLR -2 465 350 1168 174 105 43 chr4 116670564 116670907 -85657440 - MSTD LTR MaLR -2 394 1 525 239 96 79 chr4 116670912 116671267 -85657080 - MLT1D LTR MaLR -144 361 1 310 228 53 35 chr4 116671288 116671402 -85656945 - L1M4 LINE L1 -5131 1828 1713 364 327 68 12 chr4 116671474 116671636 -85656711 - L1M4 LINE L1 -5231 1628 1458 525 230 223 12 chr4 116671717 116672130 -85656217 + L1ME4a LINE L1 5618 6117 -4 600 231 59 27 chr4 116672520 116672723 -85655624 + MER33 DNA MER1_type 1 183 -86 694 260 125 0 chr4 116673799 116674007 -85654340 + MIR SINE MIR 1 234 -28 28 0 0 0 chr4 116674008 116674036 -85654311 + AT_rich Low_complexity Low_complexity 1 28 0 314 258 236 33 chr4 116674455 116674854 -85653493 + L1MC4a LINE L1 5445 5924 -1884 788 173 6 51 chr4 116675079 116675235 -85653112 + AluJo SINE Alu 1 149 -163 1059 152 4 113 chr4 116675240 116675470 -85652877 + AluJo SINE Alu 81 285 -27 1587 248 69 27 chr4 116675493 116676013 -85652334 - MLT1F LTR MaLR 0 542 1 1285 134 93 5 chr4 116677552 116677764 -85650583 - AluJb SINE Alu -15 297 77 201 322 0 17 chr4 116677955 116678014 -85650333 + L3 LINE CR1 1467 1524 -53 237 292 14 0 chr4 116678335 116678407 -85649940 - MLT1J LTR MaLR -331 180 108 208 298 153 38 chr4 116678504 116678635 -85649712 - MER5A DNA MER1_type -5 184 39 252 307 95 36 chr4 116678651 116678788 -85649559 - MIR3 SINE MIR -49 159 15 381 262 97 0 chr4 116679422 116679525 -85648822 - MER119 DNA MER1_type -449 134 22 2267 82 0 0 chr4 116679664 116679967 -85648380 - AluY SINE Alu 0 303 1 2830 3 0 0 chr4 116680302 116680605 -85647742 + AluY SINE Alu 1 303 -8 25 51 0 0 chr4 116681103 116681142 -85647205 + AT_rich Low_complexity Low_complexity 1 39 0 263 59 0 0 chr4 116681283 116681317 -85647030 - U2 snRNA snRNA -154 34 1 398 357 147 22 chr4 116681872 116682191 -85646156 - L2 LINE L2 -542 2772 2414 489 117 13 0 chr4 116682374 116682451 -85645896 + AluJ/FLAM SINE Alu 1 78 -234 353 345 60 36 chr4 116682685 116682986 -85645361 - L2 LINE L2 -1 3312 3005 765 277 121 10 chr4 116682994 116683617 -85644730 + L1ME3A LINE L1 4972 5658 -512 210 283 38 0 chr4 116683621 116683674 -85644673 + MER5A DNA MER1_type 21 75 -114 * 382 242 50 30 chr4 116683667 116683766 -85644581 - MER5A DNA MER1_type -80 109 9 700 259 91 27 chr4 116683954 116684251 -85644096 + L1ME3A LINE L1 5637 5952 -218 227 217 29 0 chr4 116684429 116684498 -85643849 + (CATATA)n Simple_repeat Simple_repeat 3 73 0 1762 160 0 7 chr4 116684520 116684808 -85643539 - AluJb SINE Alu -26 286 1 643 273 222 29 chr4 116684917 116685349 -85642998 - MLT1H LTR MaLR -46 496 1 190 91 0 68 chr4 116685519 116685563 -85642784 + (CATA)n Simple_repeat Simple_repeat 3 43 0 332 202 58 4 chr4 116685686 116685754 -85642593 + MER20 DNA MER1_type 1 49 -170 280 158 61 12 chr4 116686248 116686330 -85642017 + (TTATA)n Simple_repeat Simple_repeat 4 89 0 334 232 167 24 chr4 116686694 116686862 -85641485 - L1ME4a LINE L1 -215 5906 5715 216 0 0 0 chr4 116687139 116687163 -85641184 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 2116 117 0 3 chr4 116687788 116688088 -85640259 - AluSx SINE Alu -13 299 1 585 253 146 5 chr4 116688241 116688444 -85639903 - MIR SINE MIR -12 250 19 217 262 0 0 chr4 116688694 116688736 -85639611 - MER91 DNA MER1_type -79 61 20 1315 312 109 67 chr4 116688877 116689324 -85639023 - Charlie2a DNA MER1_type -9 2853 2355 2158 129 10 0 chr4 116689324 116689633 -85638714 - AluSx SINE Alu 0 312 1 1315 312 109 67 chr4 116689633 116689995 -85638352 - Charlie2a DNA MER1_type -507 2355 2010 254 327 19 48 chr4 116690134 116690203 -85638144 - MIR SINE MIR -62 146 79 2854 10 0 0 chr4 116690203 116690513 -85637834 + AluYa5 SINE Alu 1 310 -1 254 327 19 48 chr4 116690513 116690547 -85637800 - MIR SINE MIR -129 79 46 1624 179 19 41 chr4 116690654 116690973 -85637374 - AluJb SINE Alu 0 312 1 380 216 45 36 chr4 116690981 116691092 -85637255 - Charlie2a DNA MER1_type -1205 1657 1546 * 479 242 158 15 chr4 116691086 116691346 -85637001 - Charlie2a DNA MER1_type -1802 1060 764 2233 107 0 13 chr4 116691349 116691649 -85636698 + AluSx SINE Alu 3 298 -14 855 223 70 15 chr4 116691784 116692026 -85636321 - MIR SINE MIR -4 258 13 491 299 145 19 chr4 116692072 116692279 -85636068 - Charlie2a DNA MER1_type -2598 264 32 887 175 0 32 chr4 116692927 116693081 -85635266 - AluJo SINE Alu -163 149 1 229 273 0 0 chr4 116693191 116693235 -85635112 - AluJ/monomer SINE Alu -257 45 2 211 149 0 30 chr4 116693329 116693396 -85634951 + (TTTTA)n Simple_repeat Simple_repeat 3 67 0 2327 91 10 7 chr4 116693817 116694125 -85634222 - AluSc SINE Alu 0 309 1 180 77 0 0 chr4 116695097 116695123 -85633224 + (GGA)n Simple_repeat Simple_repeat 2 27 0 1201 120 10 16 chr4 116695778 116695970 -85632377 - MER46B DNA MER2_type 0 236 46 1774 161 26 3 chr4 116695973 116696278 -85632069 - AluJb SINE Alu 0 312 1 243 0 0 0 chr4 116696283 116696310 -85632037 + (TA)n Simple_repeat Simple_repeat 2 28 0 251 216 34 11 chr4 116696310 116696398 -85631949 - L1MC4 LINE L1 -1339 6703 6614 276 77 0 0 chr4 116696399 116696438 -85631909 + (TA)n Simple_repeat Simple_repeat 1 39 0 1282 120 0 6 chr4 116696444 116696627 -85631720 - AluY SINE Alu -30 281 100 1007 136 65 0 chr4 116696740 116696909 -85631438 - MER46B DNA MER2_type -180 56 2 2728 190 109 15 chr4 116697168 116697885 -85630462 - L1MC4 LINE L1 -5 8037 7254 2279 106 0 3 chr4 116697930 116698233 -85630114 + AluSx SINE Alu 1 302 -10 402 254 35 0 chr4 116698459 116698573 -85629774 + MIR SINE MIR 145 262 0 455 299 49 18 chr4 116698587 116698751 -85629596 - MIR SINE MIR -62 200 32 182 298 87 39 chr4 116699519 116699623 -85628724 - MIR SINE MIR -84 178 70 2335 105 0 0 chr4 116700247 116700551 -85627796 + AluSq SINE Alu 4 307 -6 4162 150 56 31 chr4 116701452 116702733 -85625614 - L1MB7 LINE L1 0 6184 4869 1378 172 32 126 chr4 116702747 116703217 -85625130 - L1MB5 LINE L1 -8 6166 5741 202 279 118 29 chr4 116703544 116703612 -85624735 - MIR SINE MIR -169 93 20 230 247 111 25 chr4 116703885 116703966 -85624381 + L2 LINE L2 3184 3271 -1 299 261 14 0 chr4 116704136 116704205 -85624142 - MIR SINE MIR -99 163 94 1306 202 8 27 chr4 116706123 116706380 -85621967 - AluJo SINE Alu -59 253 2 232 309 44 0 chr4 116706909 116706977 -85621370 - L2 LINE L2 0 3313 3243 1887 91 129 0 chr4 116706993 116707256 -85621091 - AluSx SINE Alu -15 297 1 650 158 8 33 chr4 116707547 116707667 -85620680 + FLAM_C SINE Alu 14 130 -13 303 208 78 13 chr4 116707779 116707856 -85620491 + L1MC5 LINE L1 7831 7912 -49 375 256 81 25 chr4 116708372 116708532 -85619815 + L1ME4a LINE L1 5949 6117 -4 23 0 0 0 chr4 116708549 116708572 -85619775 + AT_rich Low_complexity Low_complexity 1 23 0 3873 125 28 8 chr4 116708719 116709319 -85619028 - LTR9 LTR ERV1 0 612 1 2186 98 3 7 chr4 116709478 116709775 -85618572 - AluSx SINE Alu -16 296 1 474 278 19 0 chr4 116709894 116710002 -85618345 + FLAM_A SINE Alu 5 114 -28 1219 183 9 9 chr4 116710386 116710605 -85617742 + MER58A DNA MER1_type 6 224 0 1426 237 129 4 chr4 116710927 116711331 -85617016 - L1ME3A LINE L1 -241 5929 5474 210 289 77 0 chr4 116711349 116711401 -85616946 - MIR SINE MIR -60 148 93 2058 110 0 23 chr4 116711724 116712024 -85616323 - AluY SINE Alu -18 293 1 21 57 0 0 chr4 116712290 116712325 -85616022 + AT_rich Low_complexity Low_complexity 1 35 0 479 224 112 0 chr4 116712740 116712847 -85615500 + FLAM_A SINE Alu 12 130 -12 5204 221 77 19 chr4 116712903 116714066 -85614281 + Tigger3b DNA MER2_type 1 1230 -1 2054 147 0 3 chr4 116714136 116714436 -85613911 - AluSx SINE Alu -13 299 1 1048 284 147 34 chr4 116714472 116715375 -85612972 - L2 LINE L2 -8 3305 2295 22 0 0 0 chr4 116715501 116715523 -85612824 + AT_rich Low_complexity Low_complexity 1 22 0 2181 121 0 13 chr4 116715715 116715891 -85612456 - AluSx SINE Alu -3 309 137 2270 77 10 7 chr4 116715891 116716188 -85612159 - AluSq SINE Alu -15 298 1 2181 121 0 13 chr4 116716188 116716324 -85612023 - AluSx SINE Alu -175 137 1 613 283 52 22 chr4 116716874 116717242 -85611105 - L1MC5 LINE L1 -271 7690 7312 298 171 38 165 chr4 116717388 116717546 -85610801 - L1MC4 LINE L1 -786 7256 7119 * 320 302 63 16 chr4 116717543 116717669 -85610678 + L1MC4a LINE L1 5774 5905 -1903 769 235 55 111 chr4 116718160 116718745 -85609602 + L1MC4a LINE L1 6542 7006 -802 1956 136 10 0 chr4 116719943 116720238 -85608109 - AluSx SINE Alu -14 298 1 2415 87 3 0 chr4 116720297 116720609 -85607738 - AluSp SINE Alu 0 313 1 1684 180 3 22 chr4 116720947 116721258 -85607089 + AluJb SINE Alu 1 305 -7 403 200 25 0 chr4 116721402 116721482 -85606865 + MIR SINE MIR 78 159 -103 1057 285 67 48 chr4 116721498 116721915 -85606432 - L2 LINE L2 -6 3307 2883 2457 74 0 13 chr4 116722055 116722366 -85605981 + AluY SINE Alu 1 307 -4 338 331 79 14 chr4 116722913 116723052 -85605295 - L2 LINE L2 -14 3258 3111 220 247 199 60 chr4 116723525 116723691 -85604656 - L2 LINE L2 -2 3311 3123 202 146 0 24 chr4 116723768 116723809 -85604538 + (TA)n Simple_repeat Simple_repeat 2 41 0 1873 142 3 42 chr4 116725313 116725624 -85602723 - AluJb SINE Alu -8 304 6 2343 96 0 3 chr4 116725635 116725937 -85602410 - AluSg SINE Alu -9 301 1 2288 90 0 0 chr4 116725949 116726237 -85602110 - AluSg SINE Alu -14 296 9 240 184 0 0 chr4 116726736 116726774 -85601573 - Alu SINE Alu -11 290 253 724 168 0 8 chr4 116726774 116726893 -85601454 - AluJb SINE Alu -194 118 1 285 190 0 0 chr4 116726933 116726991 -85601356 - L1MC5 LINE L1 -72 7889 7832 1924 132 7 33 chr4 116727022 116727326 -85601021 + AluSx SINE Alu 1 296 -16 3422 147 65 16 chr4 116728218 116728905 -85599442 + L1MA8 LINE L1 5470 6190 -101 3757 148 58 19 chr4 116728220 116729008 -85599339 + L1MA8 LINE L1 5472 6290 -1 1195 105 0 0 chr4 116729196 116729399 -85598948 - AluSg/x SINE Alu 0 336 134 2036 141 23 0 chr4 116730060 116730364 -85597983 - AluJb SINE Alu -1 311 1 698 172 23 0 chr4 116730404 116730532 -85597815 - U2 snRNA snRNA -1 187 57 2354 97 3 0 chr4 116731975 116732283 -85596064 + AluSp SINE Alu 1 309 -4 2361 90 0 3 chr4 116732985 116733295 -85595052 - AluSg SINE Alu -1 309 1 2439 71 3 3 chr4 116733304 116733614 -85594733 - AluY SINE Alu 0 311 2 349 293 198 0 chr4 116733686 116733802 -85594545 - MIR3 SINE MIR -34 174 36 186 133 0 0 chr4 116734013 116734043 -85594304 + (TG)n Simple_repeat Simple_repeat 2 31 0 640 200 0 39 chr4 116734156 116734286 -85594061 - FLAM_C SINE Alu -6 137 13 669 231 8 0 chr4 116734321 116734442 -85593905 + FLAM_A SINE Alu 1 122 -11 2072 134 0 3 chr4 116734452 116734750 -85593597 + AluSx SINE Alu 1 297 -15 390 174 58 12 chr4 116734965 116735051 -85593296 - L1ME LINE L1 -434 5687 5598 620 270 122 17 chr4 116735692 116735929 -85592418 + MIR SINE MIR 1 262 0 2364 102 0 0 chr4 116738209 116738513 -85589834 + AluSx SINE Alu 9 312 0 2007 119 3 32 chr4 116738756 116739068 -85589279 + AluSg SINE Alu 1 303 -7 1004 238 57 50 chr4 116739187 116739379 -85588968 + L1ME1 LINE L1 5709 5898 -268 1961 108 0 102 chr4 116739379 116739712 -85588635 + AluSx SINE Alu 1 299 -13 1004 238 57 50 chr4 116739712 116739922 -85588425 + L1ME1 LINE L1 5898 6114 -52 1843 158 4 0 chr4 116740148 116740427 -85587920 + AluSx SINE Alu 3 282 -30 260 151 0 19 chr4 116740518 116740571 -85587776 - L1PA16 LINE L1 -9 6157 6106 22 70 0 0 chr4 116740602 116740645 -85587702 + AT_rich Low_complexity Low_complexity 1 43 0 1981 134 21 3 chr4 116741014 116741298 -85587049 - AluJb SINE Alu -23 289 1 773 123 0 0 chr4 116741884 116741998 -85586349 + AluSq/x SINE Alu 1 114 -199 2309 95 20 0 chr4 116742317 116742623 -85585724 + AluSx SINE Alu 1 312 0 660 288 50 14 chr4 116742778 116742997 -85585350 - MIR SINE MIR -16 246 20 2137 133 10 10 chr4 116743545 116743854 -85584493 - AluSx SINE Alu -3 309 1 420 243 29 52 chr4 116744407 116744580 -85583767 - LTR41 LTR ERVL -603 170 2 216 250 29 29 chr4 116744765 116744833 -85583514 - L3 LINE CR1 -11 1566 1499 1368 173 96 3 chr4 116745429 116745741 -85582606 - L1MB7 LINE L1 -16 6168 5828 759 194 0 0 chr4 116745742 116745871 -85582476 - AluJ SINE Alu -14 298 170 2286 87 0 3 chr4 116746002 116746300 -85582047 + AluY SINE Alu 1 297 -14 1076 161 20 40 chr4 116746477 116746676 -85581671 - AluJ SINE Alu -117 195 1 1507 158 0 0 chr4 116746678 116746937 -85581410 - L1MB7 LINE L1 -358 5826 5568 2135 99 0 17 chr4 116746970 116747263 -85581084 + AluSc SINE Alu 1 288 -21 2237 88 0 17 chr4 116747265 116747560 -85580787 + AluY SINE Alu 1 290 -21 289 310 43 16 chr4 116747917 116748211 -85580136 + L1P LINE L1 4741 5047 -1099 2399 88 0 0 chr4 116748221 116748527 -85579820 - AluY SINE Alu -5 306 1 26 0 0 0 chr4 116748527 116748553 -85579794 + AT_rich Low_complexity Low_complexity 1 26 0 456 321 82 27 chr4 116748784 116749160 -85579187 + L1MC/D LINE L1 5317 5723 -398 1015 167 0 44 chr4 116749189 116749369 -85578978 + FAM SINE Alu 4 175 0 1447 180 3 64 chr4 116750466 116750650 -85577697 - AluJo SINE Alu -2 310 153 2451 84 0 7 chr4 116750650 116750960 -85577387 - AluSq SINE Alu -5 308 1 1447 180 3 64 chr4 116750960 116751103 -85577244 - AluJo SINE Alu -159 153 3 312 195 52 0 chr4 116751146 116751223 -85577124 - L1PB4 LINE L1 -3 6153 6073 2074 121 3 3 chr4 116752299 116752596 -85575751 + AluSx SINE Alu 1 297 -15 1655 193 13 7 chr4 116752994 116753300 -85575047 + AluJb SINE Alu 2 309 -3 1059 152 12 0 chr4 116753584 116753748 -85574599 + AluSg/x SINE Alu 134 299 -11 494 259 192 94 chr4 116753848 116754176 -85574171 - L2 LINE L2 -6 3307 2948 1520 264 279 21 chr4 116754179 116755053 -85573294 - L2 LINE L2 -1864 1450 351 241 246 77 0 chr4 116755057 116755122 -85573225 - L2 LINE L2 -3170 144 75 1891 158 9 25 chr4 116755686 116756003 -85572344 + AluJo SINE Alu 1 312 0 22 35 0 0 chr4 116756918 116756947 -85571400 + AT_rich Low_complexity Low_complexity 1 29 0 395 274 143 101 chr4 116757846 116758182 -85570165 + L2 LINE L2 2914 3263 -9 1674 158 66 4 chr4 116758186 116758459 -85569888 - AluJo SINE Alu -21 291 2 942 290 54 13 chr4 116758605 116758977 -85569370 + HERVL LTR ERVL 2804 3190 -2464 201 94 0 0 chr4 116759045 116759077 -85569270 + (A)n Simple_repeat Simple_repeat 1 32 0 563 244 60 55 chr4 116759167 116759384 -85568963 + HERVL LTR ERVL 3449 3666 -2098 2736 247 95 21 chr4 116759452 116760230 -85568117 + HERVL LTR ERVL 3786 4648 -1116 2006 136 136 18 chr4 116760230 116760613 -85567734 + MSTA LTR MaLR 1 428 0 2736 247 95 21 chr4 116760613 116760784 -85567563 + HERVL LTR ERVL 4648 4805 -959 742 285 109 37 chr4 116760818 116761194 -85567153 + HERVL LTR ERVL 4895 5297 -467 425 353 84 10 chr4 116761277 116761512 -85566835 + MIR SINE MIR 2 250 -12 278 306 35 0 chr4 116761933 116762018 -85566329 + L2 LINE L2 2924 3011 -261 5774 86 34 23 chr4 116762244 116762379 -85565968 - L1PB2 LINE L1 0 6151 6019 2199 128 3 0 chr4 116762379 116762685 -85565662 - AluSx SINE Alu -5 307 1 5774 86 34 23 chr4 116762685 116763504 -85564843 - L1PB2 LINE L1 -132 6019 5227 216 217 43 0 chr4 116763520 116763566 -85564781 + L2 LINE L2 3188 3235 -37 2126 106 3 17 chr4 116763625 116763945 -85564402 - AluSx SINE Alu 0 312 1 667 162 190 34 chr4 116763993 116764172 -85564175 - L2 LINE L2 -4 3309 3103 1862 80 0 8 chr4 116764212 116764450 -85563897 - AluSq SINE Alu -77 236 1 180 273 0 0 chr4 116764965 116765075 -85563272 + CT-rich Low_complexity Low_complexity 1 110 0 305 265 106 35 chr4 116765854 116766024 -85562323 - L1M4 LINE L1 -3327 3521 3340 836 184 0 0 chr4 116766106 116766258 -85562089 - MER69 DNA AcHobo -818 408 257 771 203 89 0 chr4 116766265 116766467 -85561880 + L1MB8 LINE L1 5953 6172 -6 210 71 0 0 chr4 116767866 116767894 -85560453 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2250 94 0 7 chr4 116768602 116768899 -85559448 - AluSg SINE Alu -15 295 1 1558 218 49 35 chr4 116768936 116769532 -85558815 + pTR5 LTR ERV1 741 1344 -1094 4666 96 22 134 chr4 116769548 116770474 -85557873 + LTR12 LTR ERV1 5 826 0 547 182 26 78 chr4 116770976 116771168 -85557179 + MER53 DNA DNA 8 189 0 302 288 138 72 chr4 116771838 116772171 -85556176 - L1M4 LINE L1 -5969 880 526 2155 99 0 13 chr4 116773448 116773751 -85554596 - AluSg SINE Alu -11 299 1 605 52 0 0 chr4 116775510 116775587 -85552760 - Alu SINE Alu -232 77 1 2183 91 7 29 chr4 116775829 116776138 -85552209 - AluSc SINE Alu -7 302 1 1312 133 4 76 chr4 116777529 116777778 -85550569 - AluJo SINE Alu -3 309 79 1940 123 7 23 chr4 116778253 116778563 -85549784 + AluSx SINE Alu 1 305 -7 207 0 0 0 chr4 116778933 116778956 -85549391 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2504 64 0 0 chr4 116780066 116780361 -85547986 - AluY SINE Alu -16 295 1 2391 85 3 0 chr4 116780513 116780818 -85547529 - AluSx SINE Alu -6 306 1 1150 224 14 9 chr4 116781446 116781669 -85546678 - MER58A DNA MER1_type 0 224 1 2006 131 0 0 chr4 116782319 116782628 -85545719 - AluSx SINE Alu 0 309 1 496 235 185 46 chr4 116782640 116783007 -85545340 - MLT1J1 LTR MaLR -72 439 1 2191 99 0 3 chr4 116784190 116784483 -85543864 + AluY SINE Alu 5 296 -15 799 305 91 64 chr4 116784558 116784883 -85543464 + L3 LINE CR1 860 1210 -367 1872 132 59 3 chr4 116784883 116785170 -85543177 - AluSg SINE Alu -7 303 1 799 305 91 64 chr4 116785170 116785440 -85542907 + L3 LINE CR1 1210 1471 -106 906 238 97 9 chr4 116785446 116785699 -85542648 - LTR41 LTR ERVL -493 280 8 24 0 0 0 chr4 116786816 116786840 -85541507 + AT_rich Low_complexity Low_complexity 1 24 0 331 235 97 87 chr4 116787365 116787643 -85540704 + L1P5 LINE L1 5266 5553 -598 418 232 51 29 chr4 116787648 116787786 -85540561 - LTR33 LTR ERVL 0 521 381 2221 127 0 0 chr4 116787857 116788165 -85540182 - AluSx SINE Alu -2 310 3 220 239 82 112 chr4 116788391 116788525 -85539822 - MIR SINE MIR -21 241 112 2719 29 0 3 chr4 116788614 116788925 -85539422 - AluY SINE Alu -1 310 1 412 230 66 6 chr4 116789400 116789506 -85538841 - MIR SINE MIR -67 141 34 1344 152 14 76 chr4 116789509 116789785 -85538562 - AluJo SINE Alu -17 295 37 2187 66 0 0 chr4 116790271 116790529 -85537818 - AluSc SINE Alu -17 292 35 392 294 57 34 chr4 116790552 116790729 -85537618 + MER91B DNA MER1_type 1 181 -9 7600 47 15 0 chr4 116790905 116791912 -85536435 - L1PA6 LINE L1 -6 6148 5134 7967 25 9 0 chr4 116791913 116793551 -85534796 + L1PA4 LINE L1 4509 6152 -3 35556 89 33 10 chr4 116793589 116798607 -85529740 - L1PA6 LINE L1 -999 5147 11 297 279 47 0 chr4 116800739 116800825 -85527522 + L2 LINE L2 3198 3287 -26 1487 256 124 41 chr4 116801521 116802198 -85526149 - HAL1 LINE L1 -1 2506 1760 2268 106 7 0 chr4 116802198 116802501 -85525846 - AluSx SINE Alu -7 305 1 1487 256 124 41 chr4 116802501 116802574 -85525773 - HAL1 LINE L1 -747 1760 1694 2164 123 0 3 chr4 116802714 116803015 -85525332 - AluSx SINE Alu -12 300 1 268 266 9 26 chr4 116803015 116803128 -85525219 - HAL1 LINE L1 -1365 1142 1032 2395 87 0 10 chr4 116803140 116803438 -85524909 + AluSx SINE Alu 1 295 -17 651 251 65 22 chr4 116803439 116803740 -85524607 - L1MC4a LINE L1 -1218 6590 6344 470 257 79 0 chr4 116803735 116803887 -85524460 - L1ME2 LINE L1 -1 6163 6000 * 1698 71 5 14 chr4 116805471 116805683 -85522664 + AluSg/x SINE Alu 81 290 -20 894 330 113 6 chr4 116806066 116806551 -85521796 - L2 LINE L2 -1979 1335 799 859 175 88 0 chr4 116806561 116806721 -85521626 - MER3 DNA MER1_type -82 127 1 242 305 119 13 chr4 116806725 116806876 -85521471 - L2 LINE L2 -2511 803 637 6712 54 9 61 chr4 116807741 116808747 -85519600 - SVA Other Other 0 1386 433 5921 65 21 53 chr4 116808764 116809658 -85518689 - SVA Other Other -520 866 1 2134 125 7 3 chr4 116810685 116810981 -85517366 - AluSx SINE Alu -11 301 5 220 239 0 0 chr4 116811188 116811234 -85517113 + MIR SINE MIR 34 79 -129 21 0 0 0 chr4 116811795 116811816 -85516531 + AT_rich Low_complexity Low_complexity 1 21 0 2002 158 0 0 chr4 116811816 116812108 -85516239 - AluSc SINE Alu -17 292 1 10548 134 41 14 chr4 116812138 116814098 -85514249 - L1MA2 LINE L1 0 7723 5816 183 42 0 0 chr4 116814098 116814122 -85514225 + (TCTCCC)n Simple_repeat Simple_repeat 2 25 0 9567 73 51 10 chr4 116814126 116815420 -85512927 + SVA Other Other 40 1386 0 10548 134 41 14 chr4 116815420 116816295 -85512052 - L1MA2 LINE L1 -1909 5814 4807 * 16798 127 22 33 chr4 116816285 116816974 -85511373 - L1MA2 LINE L1 -3238 4327 3632 2206 98 0 3 chr4 116816974 116817290 -85511057 - AluY SINE Alu 0 315 1 16798 127 22 33 chr4 116817290 116817762 -85510585 - L1MA2 LINE L1 -3933 3632 3156 2202 130 0 0 chr4 116817762 116818062 -85510285 - AluSq SINE Alu -13 300 1 16798 127 22 33 chr4 116818062 116818224 -85510123 - L1MA2 LINE L1 -4409 3156 2994 2243 117 13 0 chr4 116818224 116818533 -85509814 - AluSq SINE Alu 0 313 1 16798 127 22 33 chr4 116818533 116819501 -85508846 - L1MA2 LINE L1 -4571 2994 2017 1672 163 3 48 chr4 116819501 116819816 -85508531 - AluJb SINE Alu 0 302 1 16798 127 22 33 chr4 116819816 116820137 -85508210 - L1MA2 LINE L1 -5548 2017 1694 4431 88 4 0 chr4 116820137 116820685 -85507662 - MER41A LTR ERV1 0 554 5 16798 127 22 33 chr4 116820685 116821306 -85507041 - L1MA2 LINE L1 -5871 1694 1103 511 158 50 25 chr4 116821300 116821420 -85506927 - L1MA2 LINE L1 -7430 135 13 * 1623 152 42 0 chr4 116821646 116821909 -85506438 - Tigger3(Golem) DNA MER2_type -1 3028 2755 2303 194 86 65 chr4 116821916 116822545 -85505802 + LTR68 LTR ERV1 99 740 0 1366 220 28 72 chr4 116823053 116823274 -85505073 - MLT1A2 LTR MaLR 0 374 176 2088 124 10 13 chr4 116823274 116823581 -85504766 - AluSx SINE Alu -6 306 1 1366 220 28 72 chr4 116823581 116823750 -85504597 - MLT1A2 LTR MaLR -198 176 1 597 226 61 39 chr4 116823763 116823840 -85504507 + HAL1 LINE L1 1 75 -2432 2466 77 0 0 chr4 116823840 116824139 -85504208 + AluY SINE Alu 1 299 -12 597 226 61 39 chr4 116824139 116824242 -85504105 + HAL1 LINE L1 75 185 -2322 1106 248 142 64 chr4 116824249 116824778 -85503569 - MLT1E LTR MaLR -2 591 22 1236 181 47 40 chr4 116824789 116825066 -85503281 - L1MD2 LINE L1 -7 6352 6074 1401 207 37 31 chr4 116825318 116825670 -85502677 + MLT1A1 LTR MaLR 11 364 -1 983 210 23 51 chr4 116825670 116825927 -85502420 + MLT2F LTR ERVL 414 663 0 1056 276 149 13 chr4 116825933 116826382 -85501965 + HAL1 LINE L1 202 711 -1796 2383 63 0 13 chr4 116826421 116826723 -85501624 - AluY SINE Alu -12 299 2 190 283 0 0 chr4 116827117 116827170 -85501177 + L2 LINE L2 3261 3313 0 453 315 85 39 chr4 116827761 116828148 -85500199 - Tigger8 DNA MER2_type -10 656 252 384 257 92 33 chr4 116828270 116828422 -85499925 - MER20B DNA MER1_type -17 202 42 336 252 117 0 chr4 116828461 116828564 -85499783 - Tigger8 DNA MER2_type -548 118 4 526 257 65 14 chr4 116828578 116828792 -85499555 - L1ME4a LINE L1 -215 5906 5682 586 299 54 23 chr4 116829295 116829556 -85498791 + LTR16C LTR ERVL 221 489 -2 315 0 0 0 chr4 116829968 116830003 -85498344 + (TC)n Simple_repeat Simple_repeat 2 36 0 723 44 0 0 chr4 116830003 116830094 -85498253 + (CCTA)n Simple_repeat Simple_repeat 1 91 0 1957 117 3 43 chr4 116830094 116830394 -85497953 - AluSx SINE Alu -24 288 1 2125 119 3 3 chr4 116830441 116830734 -85497613 + AluSg SINE Alu 1 293 -17 501 275 78 26 chr4 116830853 116831046 -85497301 - MIR SINE MIR -53 209 7 332 194 0 16 chr4 116831828 116831890 -85496457 - MIR SINE MIR -113 149 89 2176 120 0 7 chr4 116831906 116832214 -85496133 - AluSg SINE Alu -4 306 1 2375 102 0 0 chr4 116832892 116833195 -85495152 - AluSx SINE Alu -7 305 3 22 56 0 0 chr4 116833355 116833391 -85494956 + AT_rich Low_complexity Low_complexity 1 36 0 18975 34 16 14 chr4 116833739 116834866 -85493481 + Tigger5 DNA MER2_type 1 1124 -1199 1746 209 0 10 chr4 116834866 116835168 -85493179 - AluJo SINE Alu -13 299 1 18975 34 16 14 chr4 116835168 116835874 -85492473 + Tigger5 DNA MER2_type 1124 1843 -480 2245 104 3 25 chr4 116835874 116836192 -85492155 + AluSx SINE Alu 1 311 -1 18975 34 16 14 chr4 116836192 116836673 -85491674 + Tigger5 DNA MER2_type 1843 2321 -2 257 302 58 23 chr4 116836703 116836789 -85491558 + L2 LINE L2 3206 3294 -19 21 0 0 0 chr4 116837516 116837537 -85490810 + AT_rich Low_complexity Low_complexity 1 21 0 2174 114 0 29 chr4 116837546 116837861 -85490486 + AluSx SINE Alu 1 306 -6 1272 282 68 54 chr4 116838539 116838646 -85489701 - L2 LINE L2 0 3313 3209 2326 116 0 0 chr4 116838646 116838947 -85489400 + AluSx SINE Alu 1 301 -11 1272 282 68 54 chr4 116838947 116839752 -85488595 - L2 LINE L2 -104 3209 2364 859 127 0 15 chr4 116840140 116840274 -85488073 - AluSg/x SINE Alu -2 310 179 3009 190 111 53 chr4 116840356 116841146 -85487201 - MER21B LTR ERV1 -20 911 1 1589 188 7 11 chr4 116841198 116841485 -85486862 + AluJo SINE Alu 5 290 -22 2323 102 3 3 chr4 116841583 116841896 -85486451 - AluSp SINE Alu 0 313 1 495 212 20 20 chr4 116842609 116842755 -85485592 + LTR41 LTR ERVL 6 151 -622 508 218 120 0 chr4 116843168 116843310 -85485037 - MER58C DNA MER1_type 0 215 57 636 196 0 28 chr4 116843415 116843558 -85484789 - MLT1F1 LTR MaLR -10 557 419 2286 110 3 0 chr4 116843631 116843930 -85484417 - AluSx SINE Alu -12 300 1 28 22 0 22 chr4 116844264 116844291 -85484056 + AT_rich Low_complexity Low_complexity 1 28 -17 2318 85 0 7 chr4 116844291 116844584 -85483763 - AluY SINE Alu -20 291 1 28 22 0 22 chr4 116844584 116844602 -85483745 + AT_rich Low_complexity Low_complexity 28 45 0 843 209 186 41 chr4 116845094 116845216 -85483131 - L1ME3A LINE L1 -14 6156 6053 2513 65 3 3 chr4 116845216 116845522 -85482825 + AluSp SINE Alu 1 306 -7 843 209 186 41 chr4 116845522 116845744 -85482603 - L1ME3A LINE L1 -117 6053 5762 3397 137 66 5 chr4 116845745 116845836 -85482511 + LTR9B LTR ERV1 1 85 -559 4053 42 22 2 chr4 116845836 116846335 -85482012 - L1PA7 LINE L1 -8 6146 5638 3397 137 66 5 chr4 116846335 116846850 -85481497 + LTR9B LTR ERV1 85 644 0 664 239 115 0 chr4 116846851 116847069 -85481278 - L1ME3A LINE L1 -407 5763 5521 913 332 113 15 chr4 116847297 116847568 -85480779 - L2 LINE L2 -1028 2286 2043 2277 107 0 0 chr4 116847568 116847868 -85480479 + AluSx SINE Alu 1 300 -12 913 332 113 15 chr4 116847868 116848187 -85480160 - L2 LINE L2 -1271 2043 1638 3361 94 20 8 chr4 116848412 116848913 -85479434 + L1PB1 LINE L1 5642 6148 -3 7929 108 21 50 chr4 116848956 116849093 -85479254 - Tigger1 DNA MER2_type -1 2417 2277 2041 127 0 3 chr4 116849093 116849377 -85478970 + AluJb SINE Alu 5 287 -25 7929 108 21 50 chr4 116849377 116850423 -85477924 - Tigger1 DNA MER2_type -141 2277 1280 2127 122 10 0 chr4 116850423 116850718 -85477629 + AluSq SINE Alu 1 298 -15 7929 108 21 50 chr4 116850718 116850938 -85477409 - Tigger1 DNA MER2_type -1138 1280 1055 855 189 121 96 chr4 116850949 116851388 -85476959 - LTR7 LTR ERV1 0 450 1 * 5913 135 36 25 chr4 116851388 116852126 -85476221 - Tigger1 DNA MER2_type -1361 1057 302 1985 72 41 44 chr4 116852126 116852419 -85475928 - AluY SINE Alu -19 292 1 5913 135 36 25 chr4 116852419 116852725 -85475622 - Tigger1 DNA MER2_type -2116 302 1 284 285 83 7 chr4 116853080 116853224 -85475123 - MARNA DNA Mariner -142 444 290 382 162 0 0 chr4 116853909 116853977 -85474370 - Alu SINE Alu 0 302 235 1080 76 0 0 chr4 116853977 116854108 -85474239 - AluSg SINE Alu -179 131 1 2128 126 10 0 chr4 116854206 116854500 -85473847 - AluSx SINE Alu -15 297 1 2191 121 3 3 chr4 116854509 116854816 -85473531 - AluSx SINE Alu -2 310 4 369 119 17 0 chr4 116854837 116854896 -85473451 + MLT1C LTR MaLR 408 467 0 257 95 24 0 chr4 116855000 116855042 -85473305 + MER57A LTR ERV1 295 337 -66 328 302 63 16 chr4 116855437 116855563 -85472784 - L1ME4a LINE L1 -247 5874 5743 303 257 74 0 chr4 116855590 116855738 -85472609 - L1ME4a LINE L1 -2 6119 5961 272 300 81 12 chr4 116855740 116855900 -85472447 - L1ME4a LINE L1 -382 5739 5569 363 352 95 58 chr4 116856028 116856724 -85471623 + L2 LINE L2 2254 2975 -339 547 276 62 62 chr4 116856739 116857173 -85471174 + L2 LINE L2 1437 1870 -1444 1076 308 163 28 chr4 116857176 116857822 -85470525 + L2 LINE L2 2245 2977 -337 258 289 26 0 chr4 116857835 116857911 -85470436 - MIR SINE MIR -48 214 137 3652 150 17 8 chr4 116858030 116858676 -85469671 - L1MC1 LINE L1 0 6333 5682 22 35 0 0 chr4 116859073 116859102 -85469245 + AT_rich Low_complexity Low_complexity 1 29 0 415 288 49 49 chr4 116860166 116860392 -85467955 - L1MDa LINE L1 -3961 2579 2354 233 308 101 0 chr4 116860514 116860712 -85467635 - HAL1 LINE L1 -898 1609 1392 781 160 0 47 chr4 116860739 116860889 -85467458 - AluJb SINE Alu -169 143 1 1641 212 170 9 chr4 116861591 116862161 -85466186 - L1MC4 LINE L1 -141 7901 7240 1624 210 47 91 chr4 116862163 116862801 -85465546 - L1MC4 LINE L1 -957 7085 6476 1407 151 55 58 chr4 116862994 116863306 -85465041 - MLT1B LTR MaLR -79 311 1 1033 175 16 0 chr4 116863432 116863615 -85464732 - MSTD LTR MaLR -5 391 206 838 143 0 7 chr4 116863646 116863786 -85464561 - MSTD LTR MaLR -257 139 1 263 206 40 13 chr4 116863788 116863865 -85464482 - L1MDa LINE L1 -901 2000 1843 597 168 32 40 chr4 116863866 116863991 -85464356 - L2 LINE L2 -8 3305 3182 750 172 30 41 chr4 116864011 116864110 -85464237 - L1ME LINE L1 -489 5677 5579 2252 101 0 13 chr4 116864110 116864417 -85463930 + AluSg SINE Alu 1 303 -7 750 172 30 41 chr4 116864417 116864486 -85463861 - L1ME LINE L1 -587 5579 5511 2020 138 7 0 chr4 116864601 116864890 -85463457 - AluSq SINE Alu -22 291 1 2275 116 0 0 chr4 116865344 116865646 -85462701 + AluSx SINE Alu 1 302 -10 1988 251 48 54 chr4 116865828 116866605 -85461742 - MER21B LTR ERV1 -52 811 40 580 271 53 12 chr4 116866817 116866987 -85461360 + MER5A DNA MER1_type 7 183 -6 240 236 0 0 chr4 116867259 116867314 -85461033 + L1ME4a LINE L1 5963 6017 -104 1966 143 19 3 chr4 116867379 116867686 -85460661 - AluJb SINE Alu 0 312 1 2235 123 0 3 chr4 116867953 116868261 -85460086 + AluSg SINE Alu 1 307 -3 548 200 0 44 chr4 116868857 116868992 -85459355 + MER3 DNA MER1_type 5 133 -76 787 142 0 37 chr4 116869005 116869139 -85459208 - FLAM_C SINE Alu -10 133 5 439 274 152 18 chr4 116869217 116869317 -85459030 - MER5A DNA MER1_type 0 189 104 2255 105 3 0 chr4 116869317 116869612 -85458735 - AluSp SINE Alu -17 296 1 439 274 152 18 chr4 116869612 116869675 -85458672 - MER5A DNA MER1_type -85 104 4 1887 152 38 0 chr4 116870333 116870623 -85457724 + AluJb SINE Alu 5 305 -7 1622 194 3 3 chr4 116870673 116870972 -85457375 - AluJb SINE Alu -13 299 1 2312 93 3 10 chr4 116871549 116871860 -85456487 + AluSp SINE Alu 1 309 -4 1060 203 197 3 chr4 116872469 116872764 -85455583 - L2 LINE L2 0 3313 2962 2018 127 0 0 chr4 116872766 116873041 -85455306 + AluSx SINE Alu 1 275 -37 1255 166 5 27 chr4 116875438 116875661 -85452686 - AluJo SINE Alu -14 298 81 1411 159 51 4 chr4 116875964 116876221 -85452126 - L1MC1 LINE L1 -5 6608 6340 1456 111 21 4 chr4 116876232 116876475 -85451872 + MER6 DNA MER2_type 606 852 -13 1000 206 83 18 chr4 116876514 116876791 -85451556 + MER2 DNA MER2_type 51 345 0 356 275 27 20 chr4 116876934 116877083 -85451264 + GA-rich Low_complexity Low_complexity 1 150 0 3050 156 63 7 chr4 116877087 116877761 -85450586 - L1MC1 LINE L1 -440 6173 5468 8361 180 50 30 chr4 116877768 116881451 -85446896 - L1MC1 LINE L1 -2154 4272 466 2121 119 3 13 chr4 116881451 116881762 -85446585 + AluSg SINE Alu 1 308 -2 8361 180 50 30 chr4 116881762 116882238 -85446109 - L1MC1 LINE L1 -5960 466 1 3859 181 67 31 chr4 116882290 116883514 -85444833 - L1MCb LINE L1 -4850 1195 173 302 229 118 49 chr4 116883577 116883721 -85444626 + L1MC4 LINE L1 7064 7217 -825 228 216 0 20 chr4 116883765 116883816 -85444531 + L1MC4 LINE L1 6950 6999 -1043 455 246 14 49 chr4 116883817 116883959 -85444388 - L1MC4a LINE L1 -941 6867 6731 27 29 0 0 chr4 116883964 116883998 -85444349 + AT_rich Low_complexity Low_complexity 1 34 0 533 181 0 11 chr4 116886296 116886376 -85441971 + MER67A LTR ERV1 1 79 -464 685 246 19 70 chr4 116886376 116886591 -85441756 + MER67B LTR ERV1 1 204 -457 1893 204 18 30 chr4 116886622 116887023 -85441324 + MSTD LTR MaLR 1 396 0 1294 170 45 4 chr4 116887025 116887272 -85441075 + MSTD-int LTR MaLR 2 258 -1477 945 149 0 0 chr4 116887272 116887406 -85440941 + AluSq/x SINE Alu 1 134 -179 467 200 60 0 chr4 116887412 116887512 -85440835 + MSTD-int LTR MaLR 253 358 -1377 * 1045 171 0 0 chr4 116887505 116887675 -85440672 - MSTD-int LTR MaLR -1564 171 2 331 148 16 16 chr4 116887677 116887738 -85440609 - MSTD LTR MaLR 0 396 336 840 251 24 5 chr4 116887738 116887945 -85440402 + MSTD-int LTR MaLR 360 570 -1165 2593 208 79 22 chr4 116887948 116888492 -85439855 + MSTD-int LTR MaLR 1161 1735 0 1599 179 47 86 chr4 116888492 116888830 -85439517 + MSTD LTR MaLR 1 322 -74 6697 65 18 272 chr4 116888830 116890663 -85437684 - SVA Other Other 0 1386 20 1599 179 47 86 chr4 116890663 116890731 -85437616 + MSTD LTR MaLR 322 391 -5 1083 194 80 33 chr4 116890744 116890803 -85437544 + MER67A LTR ERV1 92 147 -396 2134 114 0 0 chr4 116890803 116891117 -85437230 - AluSx SINE Alu 0 314 1 1083 194 80 33 chr4 116891117 116891531 -85436816 + MER67A LTR ERV1 147 538 -5 2608 172 53 20 chr4 116892046 116892454 -85435893 - MER34B LTR ERV1 0 565 147 6020 56 53 17 chr4 116892454 116893207 -85435140 - LTR17 LTR ERV1 0 780 1 2608 172 53 20 chr4 116893207 116893336 -85435011 - MER34B LTR ERV1 -418 147 24 701 274 110 17 chr4 116893790 116894027 -85434320 - MIR SINE MIR 0 262 4 304 250 125 4 chr4 116894728 116894863 -85433484 - L1ME LINE L1 -407 5755 5593 2482 70 0 0 chr4 116895076 116895376 -85432971 - AluY SINE Alu -10 301 2 278 341 35 0 chr4 116896795 116896880 -85431467 - MIR SINE MIR -162 100 13 1986 142 10 3 chr4 116897166 116897454 -85430893 - AluSq SINE Alu -23 290 1 1570 183 7 11 chr4 116897632 116897905 -85430442 + AluJo SINE Alu 24 295 -17 1498 184 0 15 chr4 116898115 116898382 -85429965 + AluSx SINE Alu 28 290 -22 283 95 0 0 chr4 116898978 116899020 -85429327 - FRAM/FAM SINE Alu -85 81 40 21 71 0 0 chr4 116899779 116899821 -85428526 + AT_rich Low_complexity Low_complexity 1 42 0 2268 87 7 17 chr4 116899997 116900296 -85428051 - AluSp SINE Alu -17 296 1 2189 104 14 0 chr4 116900922 116901211 -85427136 + AluSx SINE Alu 5 297 -15 1641 159 54 7 chr4 116901276 116901552 -85426795 + AluJo SINE Alu 8 296 -16 2245 152 35 3 chr4 116902663 116903039 -85425308 + MLT1B LTR MaLR 3 390 0 529 224 93 56 chr4 116903302 116903463 -85424884 - MIR SINE MIR 0 262 96 2606 169 36 5 chr4 116903919 116904332 -85424015 + MSTB LTR MaLR 1 426 0 2172 102 10 0 chr4 116904421 116904716 -85423631 + AluSx SINE Alu 1 298 -14 2156 108 17 0 chr4 116904758 116905046 -85423301 - AluSx SINE Alu -16 296 4 2270 92 10 7 chr4 116905843 116906146 -85422201 - AluSq SINE Alu -9 304 1 1962 99 60 3 chr4 116906490 116906772 -85421575 + AluSx SINE Alu 1 298 -14 247 246 0 0 chr4 116906987 116907048 -85421299 + MIR SINE MIR 146 206 -56 2446 76 0 3 chr4 116907797 116908101 -85420246 - AluY SINE Alu -8 303 1 28 0 0 0 chr4 116908230 116908258 -85420089 + AT_rich Low_complexity Low_complexity 1 28 0 1835 146 24 7 chr4 116908288 116908582 -85419765 - AluJo SINE Alu -13 299 1 758 210 149 0 chr4 116909977 116910158 -85418189 + MER3 DNA MER1_type 1 208 -1 293 288 150 7 chr4 116910549 116910702 -85417645 + MER5A DNA MER1_type 1 186 -3 923 214 13 0 chr4 116911393 116911552 -85416795 + FAM SINE Alu 1 161 -14 2032 129 3 16 chr4 116911968 116912278 -85416069 - AluSx SINE Alu -6 306 1 1033 128 6 0 chr4 116912451 116912607 -85415740 - AluY SINE Alu -19 292 136 1938 102 51 10 chr4 116913339 116913633 -85414714 - AluSx SINE Alu -6 306 1 209 172 0 52 chr4 116914463 116914521 -85413826 + C-rich Low_complexity Low_complexity 1 55 0 9108 112 46 29 chr4 116914894 116915736 -85412611 + Tigger1 DNA MER2_type 121 1002 -1416 1933 120 35 7 chr4 116915736 116916020 -85412327 - AluSx SINE Alu -20 292 1 9108 112 46 29 chr4 116916020 116916648 -85411699 + Tigger1 DNA MER2_type 1002 1617 -801 1488 154 60 53 chr4 116916718 116917017 -85411330 + AluJo SINE Alu 8 308 -4 369 80 40 0 chr4 116917017 116917092 -85411255 + (TA)n Simple_repeat Simple_repeat 2 79 0 229 65 0 0 chr4 116917148 116917194 -85411153 - LTR66 LTR ERVL -171 439 394 224 163 0 23 chr4 116917194 116917237 -85411110 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 4501 137 77 4 chr4 116917237 116917664 -85410683 + Tigger1 DNA MER2_type 1610 2004 -414 1843 109 84 4 chr4 116917664 116917938 -85410409 + AluSg SINE Alu 1 296 -14 4501 137 77 4 chr4 116917938 116918262 -85410085 + Tigger1 DNA MER2_type 2004 2416 -2 2137 105 20 0 chr4 116918403 116918698 -85409649 - AluSp SINE Alu -12 301 1 324 250 60 10 chr4 116919311 116919411 -85408936 + MIR SINE MIR 156 260 -2 343 306 118 39 chr4 116919921 116920150 -85408197 + MIR SINE MIR 13 259 -3 1046 144 40 0 chr4 116920177 116920351 -85407996 + MER5A DNA MER1_type 7 187 -2 28 0 0 0 chr4 116920648 116920676 -85407671 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 116921015 116921038 -85407309 + AT_rich Low_complexity Low_complexity 1 23 0 1932 177 0 0 chr4 116921482 116921781 -85406566 - AluSx SINE Alu -13 299 1 207 0 0 0 chr4 116922069 116922092 -85406255 + (T)n Simple_repeat Simple_repeat 1 23 0 4713 197 87 22 chr4 116922175 116923332 -85405015 + L1MC3 LINE L1 6531 7762 -23 2095 115 21 0 chr4 116923525 116923811 -85404536 - AluSx SINE Alu -20 292 1 1025 210 29 144 chr4 116925748 116925973 -85402374 - AluYb8 SINE Alu 0 308 135 279 0 0 0 chr4 116925973 116926004 -85402343 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1025 210 29 144 chr4 116926004 116926126 -85402221 - AluYb8 SINE Alu -173 135 1 314 23 0 23 chr4 116926470 116926514 -85401833 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1808 119 46 4 chr4 116926529 116926790 -85401557 - AluSx SINE Alu -40 272 1 412 253 110 13 chr4 116927340 116927494 -85400853 + MIR SINE MIR 88 256 -6 794 167 7 14 chr4 116927679 116927817 -85400530 + MER68 LTR ERV1 424 560 -2 1973 182 64 9 chr4 116927888 116928234 -85400113 + MLT1A1 LTR MaLR 1 365 0 216 219 0 0 chr4 116929969 116930010 -85398337 + (TA)n Simple_repeat Simple_repeat 2 42 0 1410 124 9 14 chr4 116930606 116930824 -85397523 - Tigger1 DNA MER2_type 0 2418 2202 768 134 11 134 chr4 116930813 116930992 -85397355 - Tigger1 DNA MER2_type -2261 157 1 * 265 324 170 40 chr4 116930992 116931239 -85397108 - L3 LINE CR1 -67 1510 1232 830 126 71 24 chr4 116931478 116931605 -85396742 + FLAM_C SINE Alu 1 191 -37 360 0 0 0 chr4 116931605 116931620 -85396727 + (TA)n Simple_repeat Simple_repeat 1 55 0 360 0 0 0 chr4 116931620 116931660 -85396687 + (TA)n Simple_repeat Simple_repeat 2 41 0 830 126 71 24 chr4 116931660 116931700 -85396647 + FLAM_C SINE Alu 191 228 0 2320 93 3 10 chr4 116931802 116932113 -85396234 + AluSp SINE Alu 1 309 -4 2262 99 0 10 chr4 116932332 116932635 -85395712 - AluSg SINE Alu -10 300 1 2231 243 125 29 chr4 116932698 116933357 -85394990 + L2 LINE L2 2314 3113 -200 2398 141 17 8 chr4 116933357 116933719 -85394628 + MLT1A1 LTR MaLR 1 365 0 2231 243 125 29 chr4 116933719 116933941 -85394406 + L2 LINE L2 3113 3312 -1 409 325 144 39 chr4 116934094 116934454 -85393893 - L3 LINE CR1 -498 1079 682 2296 96 13 0 chr4 116935136 116935437 -85392910 - AluSp SINE Alu -8 305 1 369 330 0 0 chr4 116935963 116936066 -85392281 + L2 LINE L2 2985 3087 -226 181 268 24 0 chr4 116936133 116936174 -85392173 + L2 LINE L2 3253 3294 -19 22 56 0 0 chr4 116936399 116936435 -85391912 + AT_rich Low_complexity Low_complexity 1 36 0 1098 231 218 18 chr4 116936905 116937304 -85391043 + L2 LINE L2 1214 1692 -1622 1340 211 72 36 chr4 116937307 116937638 -85390709 + L2 LINE L2 2372 2714 -600 2157 93 25 0 chr4 116938122 116938426 -85389921 - AluSx SINE Alu 0 311 1 974 135 11 43 chr4 116938659 116938844 -85389503 + FRAM SINE Alu 1 171 -5 435 168 11 21 chr4 116938947 116939042 -85389305 + L2 LINE L2 2383 2476 -838 934 278 92 14 chr4 116939042 116939402 -85388945 + L2 LINE L2 2926 3313 0 221 153 0 17 chr4 116941120 116941179 -85387168 + (CGGGG)n Simple_repeat Simple_repeat 1 58 0 319 314 29 36 chr4 116941279 116941416 -85386931 - MER5B DNA MER1_type -39 139 4 1938 104 45 17 chr4 116942086 116942374 -85385973 + AluSx SINE Alu 1 296 -16 256 32 0 0 chr4 116942513 116942544 -85385803 - MIR SINE MIR -14 248 218 269 271 108 47 chr4 116942594 116942723 -85385624 - MER91A DNA MER1_type -27 169 33 180 283 83 0 chr4 116942765 116942825 -85385522 - MIR SINE MIR -99 163 99 23 0 0 0 chr4 116942871 116942894 -85385453 + AT_rich Low_complexity Low_complexity 1 23 0 228 284 45 45 chr4 116942924 116943012 -85385335 + MIR3 SINE MIR 88 175 -33 192 262 78 19 chr4 116943125 116943228 -85385119 + L2 LINE L2 2125 2233 -1081 809 188 18 77 chr4 116943509 116943591 -85384756 - MER45A DNA AcHobo -1406 175 107 2501 70 0 0 chr4 116943591 116943891 -85384456 + AluY SINE Alu 1 300 -11 809 188 18 77 chr4 116943891 116943978 -85384369 - MER45A DNA AcHobo -1474 107 16 2098 101 24 3 chr4 116943999 116944287 -85384060 - AluSx SINE Alu -18 294 1 1578 261 201 24 chr4 116944496 116944903 -85383444 - L2 LINE L2 -653 2661 2327 1649 177 7 11 chr4 116944903 116945208 -85383139 + AluJo SINE Alu 1 304 0 1578 261 201 24 chr4 116945208 116945537 -85382810 - L2 LINE L2 -987 2327 1794 2198 109 13 7 chr4 116945537 116945841 -85382506 + AluSg SINE Alu 1 306 -4 22 56 0 0 chr4 116945860 116945896 -85382451 + AT_rich Low_complexity Low_complexity 1 36 0 1822 166 17 10 chr4 116945968 116946270 -85382077 - AluJo SINE Alu -8 304 1 21 57 0 0 chr4 116946491 116946526 -85381821 + AT_rich Low_complexity Low_complexity 1 35 0 678 274 63 30 chr4 116946718 116946988 -85381359 - LTR4 LTR ERV1 0 596 318 533 243 9 100 chr4 116947177 116947387 -85380960 - LTR4 LTR ERV1 -396 200 10 240 375 108 16 chr4 116947792 116948179 -85380168 + L2 LINE L2 2253 2675 -639 190 288 64 56 chr4 116948262 116948387 -85379960 + L2 LINE L2 2848 2973 -340 681 303 28 40 chr4 116948621 116948872 -85379475 + LTR67 LTR ERVL 302 549 -8 1785 181 10 0 chr4 116949123 116949421 -85378926 - AluJo SINE Alu -7 305 5 506 228 122 46 chr4 116949501 116949834 -85378513 + MLT1G LTR MaLR 4 394 -196 1119 163 0 15 chr4 116949939 116950135 -85378212 + L1MB3 LINE L1 5991 6183 0 444 255 42 69 chr4 116950617 116950833 -85377514 - L2 LINE L2 -978 2336 2127 18540 87 25 7 chr4 116951075 116953608 -85374739 - L1P LINE L1 -3568 2578 2 1088 235 0 0 chr4 116953606 116953861 -85374486 + L1PB1 LINE L1 2906 3160 -2986 * 346 291 0 0 chr4 116953896 116953982 -85374365 + L2 LINE L2 2039 2124 -1190 1206 261 89 34 chr4 116953989 116954527 -85373820 + L2 LINE L2 2739 3305 -8 419 238 62 31 chr4 116954530 116954690 -85373657 - Charlie7 DNA MER1_type -2447 165 1 421 314 23 34 chr4 116954699 116954874 -85373473 - MER5A DNA MER1_type -1 188 16 832 243 67 93 chr4 116955040 116955120 -85373227 - MLT1I LTR MaLR 0 409 328 2194 85 36 0 chr4 116955120 116955401 -85372946 - AluSc SINE Alu -17 292 2 832 243 67 93 chr4 116955401 116955740 -85372607 - MLT1I LTR MaLR -81 328 1 1722 185 10 26 chr4 116955764 116956066 -85372281 + AluJo SINE Alu 1 297 -15 386 277 48 56 chr4 116956648 116956879 -85371468 + L2 LINE L2 1533 1761 -1553 1985 143 0 34 chr4 116956903 116957225 -85371122 - AluSx SINE Alu -1 311 1 1205 149 106 116 chr4 116957236 116957538 -85370809 - AluSg SINE Alu -1 299 1 457 226 44 7 chr4 116957584 116957721 -85370626 - HAL1 LINE L1 -60 2447 2306 * 770 214 184 33 chr4 116957718 116957989 -85370358 - HAL1 LINE L1 -2153 354 43 2205 121 13 0 chr4 116958064 116958369 -85369978 - AluSx SINE Alu -3 309 1 688 126 76 8 chr4 116958448 116958567 -85369780 - LTR54B LTR ERV1 -371 127 1 22476 53 0 0 chr4 116960311 116963802 -85364545 + L1PA5 LINE L1 2668 6147 -7 10258 177 12 10 chr4 116963829 116966466 -85361881 + L1PB1 LINE L1 3151 5792 -359 198 0 0 0 chr4 116966466 116966488 -85361859 + (TA)n Simple_repeat Simple_repeat 2 23 0 10258 177 12 10 chr4 116966488 116966849 -85361498 + L1PB1 LINE L1 5792 6151 0 567 226 121 25 chr4 116966891 116967090 -85361257 - L2 LINE L2 -1412 1902 1685 1188 199 60 55 chr4 116967095 116967442 -85360905 + Charlie7 DNA MER1_type 316 664 -1948 1329 185 98 96 chr4 116967467 116967916 -85360431 + LTR7 LTR ERV1 1 450 0 2405 126 24 39 chr4 116968292 116968673 -85359674 + THE1C LTR MaLR 1 375 0 21 57 0 0 chr4 116968679 116968714 -85359633 + AT_rich Low_complexity Low_complexity 1 35 0 1734 145 8 0 chr4 116968735 116968984 -85359363 - AluSq SINE Alu -62 251 1 462 257 29 42 chr4 116969289 116969455 -85358892 + MIR SINE MIR 49 210 -52 29 0 0 0 chr4 116970250 116970279 -85358068 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 116970511 116970540 -85357807 + AT_rich Low_complexity Low_complexity 1 29 0 792 280 155 41 chr4 116970778 116971217 -85357130 - L1MC/D LINE L1 -2060 5748 5260 355 231 113 41 chr4 116971253 116971448 -85356899 - MER97c DNA MER1_type? -1 1089 881 2315 244 143 15 chr4 116971456 116972379 -85355968 + L1MEc LINE L1 753 1793 -4603 809 267 32 32 chr4 116973262 116973483 -85354864 - MIR SINE MIR -34 228 8 308 355 0 2 chr4 116973867 116973994 -85354353 + MIR SINE MIR 14 139 -69 478 245 29 10 chr4 116974012 116974114 -85354233 - MIR SINE MIR -157 105 2 507 130 0 0 chr4 116974966 116975035 -85353312 - AluS SINE Alu -243 70 2 232 292 22 45 chr4 116975367 116975456 -85352891 + L2 LINE L2 3177 3263 -9 612 236 47 61 chr4 116975503 116975563 -85352784 + L1MC5 LINE L1 7336 7395 -566 1708 148 81 0 chr4 116975563 116975834 -85352513 + AluJo SINE Alu 1 293 -19 612 236 47 61 chr4 116975834 116976069 -85352278 + L1MC5 LINE L1 7395 7627 -334 400 237 52 0 chr4 116976099 116976196 -85352151 + L1MC5 LINE L1 7702 7803 -158 271 285 170 30 chr4 116976199 116976364 -85351983 + LTR33 LTR ERVL 1 188 -333 271 311 50 31 chr4 116976437 116976598 -85351749 + LTR33 LTR ERVL 316 479 -42 295 255 21 21 chr4 116976619 116976713 -85351634 + L1MC5 LINE L1 7808 7901 -60 1482 182 81 27 chr4 116977009 116977305 -85351042 - AluJb SINE Alu 0 312 1 866 218 11 22 chr4 116977751 116977930 -85350417 - MER45A DNA AcHobo -1 177 1 528 254 127 71 chr4 116978468 116978751 -85349596 + L3 LINE CR1 1267 1565 -12 347 339 67 24 chr4 116978800 116978965 -85349382 + L2 LINE L2 3099 3270 -2 1388 158 123 46 chr4 116979011 116979296 -85349051 - AluJo SINE Alu -5 307 1 2182 123 54 42 chr4 116979555 116979888 -85348459 - MER1B DNA MER1_type 0 337 1 847 296 60 47 chr4 116980102 116980663 -85347684 - L2 LINE L2 -4 3309 2745 2400 84 7 0 chr4 116981826 116982135 -85346212 - AluSq SINE Alu -2 311 1 293 273 11 23 chr4 116982207 116982295 -85346052 - MIR SINE MIR -15 247 161 1415 160 3 6 chr4 116982644 116983047 -85345300 + LTR47A LTR ERVL 1 452 0 2330 102 3 0 chr4 116983278 116983581 -85344766 - AluSx SINE Alu -8 304 1 212 347 13 13 chr4 116983718 116983793 -85344554 - MIR SINE MIR -151 111 37 24 32 0 0 chr4 116984170 116984201 -85344146 + AT_rich Low_complexity Low_complexity 1 31 0 393 121 54 13 chr4 116984703 116984946 -85343401 + (TA)n Simple_repeat Simple_repeat 1 253 0 23 0 0 0 chr4 116984972 116984995 -85343352 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr4 116985080 116985108 -85343239 + AT_rich Low_complexity Low_complexity 1 28 0 223 333 8 24 chr4 116985372 116985495 -85342852 + C-rich Low_complexity Low_complexity 5 125 0 1254 157 9 22 chr4 116985624 116985847 -85342500 - AluY SINE Alu -84 227 8 350 286 0 19 chr4 116985858 116985963 -85342384 + L2 LINE L2 3211 3313 0 360 228 42 13 chr4 116986057 116986271 -85342076 + L1MC5 LINE L1 6976 7233 -728 2087 152 0 0 chr4 116986405 116986708 -85341639 + AluSx SINE Alu 1 303 -9 24 0 0 0 chr4 116986847 116986871 -85341476 + AT_rich Low_complexity Low_complexity 1 24 0 361 309 42 12 chr4 116986907 116987072 -85341275 + L1MC4 LINE L1 7599 7768 -274 2076 130 30 0 chr4 116987216 116987517 -85340830 + AluSx SINE Alu 1 310 -2 210 37 0 0 chr4 116987523 116987550 -85340797 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 366 187 121 0 chr4 116989411 116989502 -85338845 + MIR SINE MIR 90 191 -71 2349 108 0 3 chr4 116989507 116989813 -85338534 + AluSx SINE Alu 1 305 -7 321 336 0 0 chr4 116990149 116990259 -85338088 + L1M4 LINE L1 2262 2371 -3775 293 267 96 15 chr4 116990329 116990464 -85337883 + L1MEd LINE L1 8 153 -5966 310 294 47 0 chr4 116991088 116991258 -85337089 + L1MEd LINE L1 2103 2280 -3849 353 239 68 61 chr4 116991312 116991575 -85336772 + L1MEd LINE L1 2680 2944 -3185 309 138 66 53 chr4 116991582 116991734 -85336613 + (CTATA)n Simple_repeat Simple_repeat 2 155 0 336 333 24 0 chr4 116991953 116992079 -85336268 - MIR SINE MIR -34 228 100 560 258 129 40 chr4 116992423 116992648 -85335699 - MIR SINE MIR 0 262 18 482 316 110 19 chr4 116993013 116993222 -85335125 - MIR SINE MIR -21 241 14 2357 97 0 0 chr4 116993440 116993749 -85334598 + AluY SINE Alu 1 309 -2 6102 30 0 0 chr4 116994565 116995744 -85332603 + L1PA4 LINE L1 4822 6000 -155 4342 208 46 39 chr4 116995903 116996491 -85331856 - L1M4 LINE L1 -2528 4116 3534 5853 90 14 0 chr4 116996491 116997843 -85330504 - L1PA13 LINE L1 -19 6144 4807 4342 208 46 39 chr4 116997843 116998352 -85329995 - L1M4 LINE L1 -3110 3534 3030 1864 130 84 0 chr4 116998352 116998637 -85329710 + AluSx SINE Alu 1 309 -3 4342 208 46 39 chr4 116998637 116999574 -85328773 - L1M4 LINE L1 -3614 3030 2101 1637 202 10 16 chr4 116999574 116999881 -85328466 - AluJo SINE Alu -7 305 1 4342 208 46 39 chr4 116999881 117000565 -85327782 - L1M4 LINE L1 -4543 2101 1274 2144 125 0 3 chr4 117000565 117000853 -85327494 + AluSx SINE Alu 1 287 -25 4342 208 46 39 chr4 117000853 117000940 -85327407 - L1M4 LINE L1 -5370 1274 1189 671 315 36 7 chr4 117000946 117001225 -85327122 + L1MA10 LINE L1 899 1185 -5852 2455 234 46 20 chr4 117001261 117002467 -85325880 + L1MA10 LINE L1 1691 2890 -4217 * 4581 207 25 16 chr4 117002462 117002576 -85325771 + L1MA10 LINE L1 5231 5343 -1800 1396 232 21 0 chr4 117002576 117002865 -85325482 + AluJo SINE Alu 1 295 -17 4581 207 25 16 chr4 117002865 117004005 -85324342 + L1MA10 LINE L1 5343 6506 -637 2291 189 42 34 chr4 117004001 117004567 -85323780 + L1MA10 LINE L1 6717 7287 -7 * 1457 236 69 91 chr4 117004589 117005391 -85322956 - L1M4 LINE L1 -5366 1176 393 335 235 81 119 chr4 117005901 117006161 -85322186 - L1M4 LINE L1 -6291 251 2 1124 131 6 6 chr4 117006379 117006547 -85321800 - FRAM SINE Alu -4 172 5 259 246 130 55 chr4 117006690 117007020 -85321327 - L1ME4a LINE L1 -68 6053 5697 206 239 22 0 chr4 117007647 117007693 -85320654 + L2 LINE L2 3216 3262 -10 24 53 0 0 chr4 117007869 117007907 -85320440 + AT_rich Low_complexity Low_complexity 1 38 0 296 356 30 49 chr4 117008756 117009023 -85319324 - LTR16A LTR ERVL -186 264 3 704 140 0 0 chr4 117009374 117009481 -85318866 + AluJo/FLAM SINE Alu 1 107 -205 566 186 0 0 chr4 117009477 117009579 -85318768 + AluJb SINE Alu 208 309 -3 * 1542 342 42 17 chr4 117009698 117010584 -85317763 - ERVL LTR ERVL -745 5019 4112 2440 87 0 0 chr4 117010720 117011031 -85317316 - AluY SINE Alu 0 311 1 1112 336 23 32 chr4 117011322 117012010 -85316337 - ERVL LTR ERVL -1904 3860 3179 575 299 91 4 chr4 117012216 117012457 -85315890 - ERVL LTR ERVL -2166 2830 2569 1482 128 0 0 chr4 117012474 117012692 -85315655 + MSTA LTR MaLR 211 428 0 186 103 0 0 chr4 117012773 117012802 -85315545 + (TAAAAA)n Simple_repeat Simple_repeat 5 33 0 253 207 0 0 chr4 117013339 117013397 -85314950 + L1M4 LINE L1 3700 3757 -2389 450 0 0 0 chr4 117013459 117013509 -85314838 + (TA)n Simple_repeat Simple_repeat 2 51 0 662 219 101 27 chr4 117013594 117013936 -85314411 + L1MC5 LINE L1 6542 6823 -985 415 205 94 17 chr4 117013970 117014087 -85314260 + L1MC5 LINE L1 7103 7228 -733 338 182 38 114 chr4 117014212 117014344 -85314003 + L1MC5 LINE L1 7279 7400 -561 294 29 0 0 chr4 117014397 117014432 -85313915 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 740 220 119 78 chr4 117014432 117015013 -85313334 + L1MC5 LINE L1 7313 7917 -44 2252 121 0 0 chr4 117015084 117015381 -85312966 - AluSc SINE Alu -12 297 1 2055 108 21 3 chr4 117015381 117015669 -85312678 - AluSx SINE Alu -19 293 1 1263 161 17 30 chr4 117015757 117016131 -85312216 + MER47B DNA MER2_type 4 418 0 424 248 30 68 chr4 117016351 117016484 -85311863 - L2 LINE L2 0 3313 3186 2087 231 49 61 chr4 117016567 117017005 -85311342 + Charlie6 DNA MER1_type 93 522 -2978 1116 195 91 46 chr4 117017005 117017436 -85310911 - LTR7 LTR ERV1 0 450 1 2087 231 49 61 chr4 117017436 117017651 -85310696 + Charlie6 DNA MER1_type 522 738 -2762 * 3062 204 72 14 chr4 117017647 117018493 -85309854 + Charlie6 DNA MER1_type 879 1773 -1727 1410 213 25 0 chr4 117018493 117018779 -85309568 + MLT1F LTR MaLR 194 486 -56 548 227 0 0 chr4 117018822 117018932 -85309415 + Charlie6 DNA MER1_type 1783 1892 -1608 2421 147 30 0 chr4 117018943 117019345 -85309002 - MSTB LTR MaLR -12 414 1 2877 193 63 30 chr4 117019345 117019740 -85308607 + Charlie6 DNA MER1_type 1892 2321 -1179 2531 75 0 0 chr4 117019740 117020047 -85308300 - AluSx SINE Alu -5 307 1 2877 193 63 30 chr4 117020047 117020352 -85307995 + Charlie6 DNA MER1_type 2321 2615 -885 2354 86 0 0 chr4 117020432 117020734 -85307613 - AluSx SINE Alu -10 302 1 273 327 0 0 chr4 117022267 117022371 -85305976 + (CGG)n Simple_repeat Simple_repeat 2 105 0 328 264 18 147 chr4 117022664 117022775 -85305572 - MIR3 SINE MIR -53 155 70 777 170 0 15 chr4 117022775 117022910 -85305437 + FLAM_C SINE Alu 1 133 0 328 264 18 147 chr4 117022910 117022961 -85305386 - MIR3 SINE MIR -138 70 14 207 374 8 46 chr4 117023205 117023336 -85305011 - L2 LINE L2 -688 2626 2501 563 256 32 64 chr4 117023627 117023877 -85304470 - MIR SINE MIR -1 261 20 495 216 0 0 chr4 117024496 117024612 -85303735 + CT-rich Low_complexity Low_complexity 2 117 0 2103 139 7 0 chr4 117024619 117024928 -85303419 - AluSx SINE Alu -1 311 1 336 362 16 54 chr4 117025631 117025816 -85302531 - MER5B DNA MER1_type 0 178 1 855 320 182 29 chr4 117025833 117026837 -85301510 - L2 LINE L2 -337 2977 1820 806 200 130 0 chr4 117027202 117027387 -85300960 + MER3 DNA MER1_type 1 209 0 204 294 0 0 chr4 117027390 117027458 -85300889 - L2 LINE L2 -1519 1795 1728 673 274 39 66 chr4 117027813 117027939 -85300408 - MIR SINE MIR -10 252 135 2291 64 3 0 chr4 117027939 117028235 -85300112 + L1PA8 LINE L1 5876 6172 0 673 274 39 66 chr4 117028235 117028367 -85299980 - MIR SINE MIR -127 135 1 260 246 0 0 chr4 117028481 117028550 -85299797 + GA-rich Low_complexity Low_complexity 3 71 0 343 255 162 7 chr4 117028877 117029043 -85299304 - MIR SINE MIR -35 227 40 224 289 0 0 chr4 117030684 117030736 -85297611 + L2 LINE L2 3243 3294 -19 2424 87 3 0 chr4 117032047 117032356 -85295991 - AluSp SINE Alu -3 310 1 391 292 71 18 chr4 117134840 117134953 -85193394 - MIR3 SINE MIR -7 201 83 2371 99 0 0 chr4 117135046 117135349 -85192998 - AluSx SINE Alu -9 303 1 864 114 0 0 chr4 117135791 117135922 -85192425 + (TTCC)n Simple_repeat Simple_repeat 3 133 0 2045 129 0 0 chr4 117135927 117136213 -85192134 - AluSx SINE Alu -26 286 1 289 303 9 9 chr4 117136505 117136614 -85191733 + MIR SINE MIR 49 157 -105 216 263 70 31 chr4 117136610 117136773 -85191574 - MIR SINE MIR 0 262 59 * 356 91 35 11 chr4 117136794 117136867 -85191480 - Alu SINE Alu -243 57 2 17943 74 24 6 chr4 117138047 117141349 -85186998 - L1PA7 LINE L1 -8 6146 2779 2988 52 0 0 chr4 117141349 117141718 -85186629 - MER11D LTR ERVK -528 369 1 22857 30 2 0 chr4 117141718 117144497 -85183850 - HERVK11D LTR ERVK 0 7752 4967 7031 51 35 2 chr4 117144505 117145374 -85182973 - MER11D LTR ERVK 0 897 1 2904 209 69 53 chr4 117145998 117146523 -85181824 - L1ME2 LINE L1 -9 6155 5640 1527 163 48 4 chr4 117146523 117146774 -85181573 + AluSx SINE Alu 1 262 -50 2904 209 69 53 chr4 117146774 117147514 -85180833 - L1ME2 LINE L1 -524 5640 4877 1491 170 59 38 chr4 117148140 117148428 -85179919 - AluJo SINE Alu -16 296 3 634 213 153 22 chr4 117148718 117148901 -85179446 + MIR SINE MIR 8 214 -48 645 159 30 119 chr4 117148915 117149116 -85179231 + LTR40a LTR ERVL 23 205 -314 439 200 11 0 chr4 117149103 117149198 -85179149 + LTR40a LTR ERVL 376 471 -48 * 431 241 0 0 chr4 117149195 117149278 -85179069 + MER81 DNA DNA 23 105 -9 * 23 33 0 0 chr4 117149507 117149537 -85178810 + AT_rich Low_complexity Low_complexity 1 30 0 454 320 53 0 chr4 117150549 117150699 -85177648 - MIR3 SINE MIR -3 205 48 338 286 163 31 chr4 117151118 117151314 -85177033 - MIR SINE MIR -26 236 15 28 48 0 0 chr4 117151560 117151602 -85176745 + AT_rich Low_complexity Low_complexity 1 42 0 417 321 52 19 chr4 117151945 117152216 -85176131 - MLT1-int LTR MaLR -800 571 292 254 267 162 0 chr4 117152265 117152370 -85175977 - LTR16A LTR ERVL -327 123 2 711 225 21 113 chr4 117152631 117152871 -85175476 + MIR SINE MIR 45 262 0 1941 113 0 0 chr4 117153725 117153973 -85174374 + AluSx SINE Alu 1 248 -64 198 0 0 0 chr4 117153988 117154010 -85174337 + (A)n Simple_repeat Simple_repeat 1 22 0 24 0 0 0 chr4 117154045 117154069 -85174278 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 117154517 117154538 -85173809 + AT_rich Low_complexity Low_complexity 1 21 0 647 280 33 22 chr4 117154670 117154852 -85173495 - MIR3 SINE MIR -4 204 21 332 317 0 0 chr4 117155347 117155451 -85172896 + CT-rich Low_complexity Low_complexity 1 104 0 217 146 0 36 chr4 117156988 117157043 -85171304 + (TTTC)n Simple_repeat Simple_repeat 3 55 0 2652 147 165 0 chr4 117157338 117157842 -85170505 + LTR69 LTR ERVL 1 587 -1 499 238 14 138 chr4 117158720 117159010 -85169337 + MSTD LTR MaLR 141 394 -2 1735 156 5 97 chr4 117159011 117159414 -85168933 - Tigger7 DNA MER2_type -1991 496 131 608 176 8 0 chr4 117159517 117159636 -85168711 - Tigger7 DNA MER2_type -585 120 1 35 41 0 0 chr4 117162061 117162110 -85166237 + AT_rich Low_complexity Low_complexity 1 49 0 559 232 18 0 chr4 117162295 117162459 -85165888 + CT-rich Low_complexity Low_complexity 4 170 0 727 265 0 0 chr4 117163899 117164065 -85164282 - FRAM SINE Alu 0 166 1 891 211 23 54 chr4 117164101 117164362 -85163985 + L1M3b LINE L1 1 253 -6028 5649 241 30 27 chr4 117165328 117166980 -85161367 + L1M3b LINE L1 246 1885 -4466 304 194 0 0 chr4 117166997 117167059 -85161288 + L1M3b LINE L1 2012 2073 -4278 1219 139 34 4 chr4 117167077 117167315 -85161032 + L1MA7 LINE L1 6020 6264 -27 318 264 21 0 chr4 117167316 117167460 -85160887 + (TA)n Simple_repeat Simple_repeat 1 147 0 189 0 0 0 chr4 117167486 117167507 -85160840 + (CA)n Simple_repeat Simple_repeat 2 22 0 624 339 239 7 chr4 117167719 117168280 -85160067 + L3 LINE CR1 24 714 -863 23 0 0 0 chr4 117168461 117168484 -85159863 + AT_rich Low_complexity Low_complexity 1 23 0 342 281 62 65 chr4 117168886 117169146 -85159201 + HAL1b LINE L1 649 907 -441 3380 91 43 0 chr4 117169158 117169672 -85158675 + L1MA2 LINE L1 5769 6304 0 1813 68 68 0 chr4 117170334 117170583 -85157764 - L1PA5 LINE L1 -7 6147 5882 798 236 56 83 chr4 117170720 117171286 -85157061 + L1MC4 LINE L1 7518 8042 0 494 288 71 19 chr4 117172966 117173324 -85155023 - L1MC4a LINE L1 -345 5776 5554 585 350 57 14 chr4 117173386 117173878 -85154469 - L1MC4a LINE L1 -743 5403 4954 216 0 0 0 chr4 117174289 117174313 -85154034 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 467 215 138 15 chr4 117174341 117174471 -85153876 - MER5B DNA MER1_type -30 148 3 180 0 0 0 chr4 117176062 117176082 -85152265 + (CA)n Simple_repeat Simple_repeat 2 21 0 224 264 0 0 chr4 117176135 117176188 -85152159 - L2 LINE L2 0 3272 3220 2639 88 0 0 chr4 117176892 117177266 -85151081 + L1P5 LINE L1 5405 5778 -373 201 39 0 0 chr4 117177266 117177292 -85151055 + (TA)n Simple_repeat Simple_repeat 2 27 0 503 240 0 0 chr4 117177292 117177388 -85150959 - AluJ/FLAM SINE Alu -216 96 1 246 148 0 0 chr4 117177490 117177544 -85150803 + (TA)n Simple_repeat Simple_repeat 2 55 0 21 0 0 31 chr4 117177560 117177574 -85150773 + AT_rich Low_complexity Low_complexity 1 14 -17 2371 113 11 3 chr4 117177574 117177938 -85150409 + L1PB1 LINE L1 5782 6148 -3 21 0 0 31 chr4 117177938 117177955 -85150392 + AT_rich Low_complexity Low_complexity 14 31 0 739 231 96 0 chr4 117178365 117178521 -85149826 + AluJb SINE Alu 1 171 -141 2167 118 155 11 chr4 117178776 117179150 -85149197 + MSTA LTR MaLR 1 428 0 41621 45 3 1 chr4 117179736 117185875 -85142472 - L1PA4 LINE L1 -1 6154 1 519 289 22 43 chr4 117186115 117186347 -85142000 + MER20B DNA MER1_type 29 255 -528 284 335 116 0 chr4 117186348 117186409 -85141938 - MER5A DNA MER1_type 0 189 136 1313 150 4 33 chr4 117186409 117186683 -85141664 - L1MA4 LINE L1 0 6300 6035 284 335 116 0 chr4 117186683 117186785 -85141562 - MER5A DNA MER1_type -53 136 7 * 413 304 9 0 chr4 117186752 117186864 -85141483 - MER5B DNA MER1_type -49 129 17 1251 227 81 11 chr4 117186866 117187325 -85141022 + MER20B DNA MER1_type 233 723 -60 2040 137 17 0 chr4 117187494 117187793 -85140554 - AluSx SINE Alu -8 304 1 1984 136 3 14 chr4 117188446 117188741 -85139606 - AluSx SINE Alu -20 292 1 1524 174 44 10 chr4 117188954 117189248 -85139099 + AluJo SINE Alu 1 304 -8 1608 173 25 25 chr4 117190111 117190394 -85137953 - AluJo SINE Alu -19 293 11 2048 260 25 9 chr4 117190623 117191415 -85136932 + L1ME2 LINE L1 4246 5050 -1096 502 61 0 0 chr4 117191464 117191530 -85136817 + L1PB1 LINE L1 6029 6094 -57 355 186 0 0 chr4 117191532 117191618 -85136729 + L1ME2 LINE L1 5101 5186 -960 5763 152 17 6 chr4 117191634 117193570 -85134777 + L1PB1 LINE L1 4191 6150 -1 2705 216 80 44 chr4 117193566 117193594 -85134753 + L1ME2 LINE L1 5175 5201 -963 * 1760 200 23 3 chr4 117193594 117193894 -85134453 + AluJo SINE Alu 1 306 -6 2705 216 80 44 chr4 117193894 117194817 -85133530 + L1ME2 LINE L1 5201 6155 -9 1068 92 0 0 chr4 117195025 117195155 -85133192 - AluSg SINE Alu -180 130 1 2097 104 4 0 chr4 117196253 117196559 -85131788 - AluY SINE Alu 0 307 1 224 305 24 12 chr4 117200044 117200126 -85128221 + L2 LINE L2 3188 3270 -2 192 243 243 70 chr4 117200615 117200829 -85127518 + MIR SINE MIR 1 251 -11 383 230 236 31 chr4 117201796 117201957 -85126390 + MIR SINE MIR 8 201 -61 357 270 182 20 chr4 117201960 117202108 -85126239 + MER5B DNA MER1_type 7 178 0 316 220 0 0 chr4 117202108 117202165 -85126182 + MIR SINE MIR 191 247 -15 491 124 9 19 chr4 117202934 117203039 -85125308 - L1PA16 LINE L1 0 6166 6063 2357 102 7 0 chr4 117203051 117203356 -85124991 - AluSx SINE Alu -5 307 1 22 0 0 0 chr4 117203692 117203714 -85124633 + AT_rich Low_complexity Low_complexity 1 22 0 730 46 0 18 chr4 117204718 117204827 -85123520 + (TC)n Simple_repeat Simple_repeat 2 108 0 411 271 28 0 chr4 117208225 117208332 -85120015 + MIR SINE MIR 153 262 0 21 0 0 0 chr4 117208534 117208555 -85119792 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr4 117208591 117208626 -85119721 + AT_rich Low_complexity Low_complexity 1 35 0 1907 168 0 3 chr4 117209059 117209357 -85118990 - AluJb SINE Alu -15 297 1 417 277 174 0 chr4 117209534 117209689 -85118658 - MIR3 SINE MIR 0 208 27 2248 254 53 22 chr4 117210036 117210815 -85117532 + Charlie7 DNA MER1_type 336 1138 -1474 977 259 12 39 chr4 117210816 117211075 -85117272 - MIR SINE MIR 0 262 11 814 235 104 81 chr4 117211085 117211527 -85116820 + Charlie7 DNA MER1_type 1146 1597 -1015 1446 152 8 53 chr4 117211557 117211787 -85116560 + AluJo SINE Alu 50 268 -44 2491 52 0 10 chr4 117211787 117212093 -85116254 - AluY SINE Alu -8 303 1 1446 152 8 53 chr4 117212093 117212125 -85116222 + AluJo SINE Alu 268 300 -12 1671 242 50 24 chr4 117212126 117212746 -85115601 + Charlie7 DNA MER1_type 1634 2269 -343 2436 74 0 0 chr4 117212879 117213178 -85115169 + AluY SINE Alu 1 299 -12 387 0 0 0 chr4 117213243 117213286 -85115061 + (TG)n Simple_repeat Simple_repeat 1 43 0 727 225 6 11 chr4 117213504 117213686 -85114661 + L1M4 LINE L1 4769 4949 -1197 4081 132 34 29 chr4 117213686 117214413 -85113934 - MER4D LTR ERV1 -172 731 1 464 327 55 15 chr4 117214627 117214829 -85113518 + MIR SINE MIR 2 211 -51 2094 115 46 22 chr4 117215305 117215671 -85112676 + THE1C LTR MaLR 1 375 0 280 261 22 34 chr4 117216932 117217024 -85111323 + MIR SINE MIR 22 111 -103 36 0 0 39 chr4 117217797 117217816 -85110531 + AT_rich Low_complexity Low_complexity 1 19 -30 2490 56 0 13 chr4 117217816 117218118 -85110229 - AluY SINE Alu -13 298 1 36 0 0 39 chr4 117218118 117218149 -85110198 + AT_rich Low_complexity Low_complexity 19 49 0 6031 56 0 0 chr4 117218861 117219644 -85108703 - L1PA6 LINE L1 -2 6152 5370 1055 58 0 0 chr4 117219641 117219778 -85108569 - L1PA6 LINE L1 -1818 4328 4192 * 32994 110 18 12 chr4 117219781 117225109 -85103238 - L1P LINE L1 -776 5370 11 444 165 47 0 chr4 117225681 117225766 -85102581 + MER53 DNA DNA 7 95 -94 387 163 50 0 chr4 117225697 117225777 -85102570 - MER53 DNA DNA -12 177 94 * 228 130 22 0 chr4 117225773 117225819 -85102528 + MER53 DNA DNA 140 186 -3 * 1143 154 13 48 chr4 117226902 117227129 -85101218 + MER20 DNA MER1_type 1 219 0 312 171 29 0 chr4 117227465 117227535 -85100812 - MER113 DNA MER1_type? -154 367 296 335 113 0 0 chr4 117227788 117227841 -85100506 + MADE1 DNA Mariner 1 53 -27 417 237 26 0 chr4 117227893 117228007 -85100340 - MER63A DNA MER1_type -42 168 52 22 35 0 0 chr4 117228611 117228640 -85099707 + AT_rich Low_complexity Low_complexity 1 29 0 687 318 31 50 chr4 117229589 117229638 -85098709 + MIR SINE MIR 7 55 -207 2076 29 4 4 chr4 117229638 117229883 -85098464 + AluY SINE Alu 45 289 -22 687 318 31 50 chr4 117229883 117230094 -85098253 + MIR SINE MIR 55 262 0 595 120 20 0 chr4 117230791 117230891 -85097456 - MER34B LTR ERV1 0 565 464 842 169 0 0 chr4 117230891 117231015 -85097332 + FLAM_C SINE Alu 1 124 -19 180 0 0 0 chr4 117231016 117231036 -85097311 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 2795 121 46 0 chr4 117231036 117231489 -85096858 - MER34B LTR ERV1 -91 474 1 432 363 26 5 chr4 117231489 117231679 -85096668 + L2 LINE L2 2455 2648 -666 402 308 188 16 chr4 117231825 117232133 -85096214 + L2 LINE L2 2891 3251 -62 24 0 0 0 chr4 117232145 117232169 -85096178 + AT_rich Low_complexity Low_complexity 1 24 0 2081 115 0 14 chr4 117232289 117232577 -85095770 + AluSx SINE Alu 17 300 -12 478 116 0 0 chr4 117232811 117232880 -85095467 - AluS SINE Alu -12 298 230 203 336 55 55 chr4 117233238 117233384 -85094963 - MIR SINE MIR -46 216 71 1924 141 3 30 chr4 117233923 117234222 -85094125 - AluSx SINE Alu -21 291 1 27 29 0 0 chr4 117234395 117234429 -85093918 + AT_rich Low_complexity Low_complexity 1 34 0 2127 109 7 7 chr4 117234509 117234803 -85093544 - AluSx SINE Alu -18 294 1 1994 135 11 0 chr4 117236461 117236583 -85091764 + AluSx SINE Alu 1 120 -192 495 0 0 0 chr4 117236583 117236638 -85091709 + (TAAAA)n Simple_repeat Simple_repeat 2 56 0 1994 135 11 0 chr4 117236638 117236797 -85091550 + AluSx SINE Alu 120 285 -27 500 311 59 11 chr4 117237034 117237237 -85091110 - MIR SINE MIR -47 215 2 574 226 77 15 chr4 117238384 117238579 -85089768 - L1MC5 LINE L1 -481 7480 7274 844 217 30 81 chr4 117238712 117239108 -85089239 - L1MC4 LINE L1 -733 7228 6883 2252 95 0 0 chr4 117239482 117239788 -85088559 - AluSx SINE Alu 0 306 1 354 292 117 29 chr4 117240202 117240373 -85087974 + MIR SINE MIR 15 200 -62 265 346 100 23 chr4 117241196 117241326 -85087021 - L2 LINE L2 -15 3257 3118 317 333 139 0 chr4 117241603 117241732 -85086615 - MIR3 SINE MIR -32 176 30 349 248 68 51 chr4 117242364 117242481 -85085866 + MER5A DNA MER1_type 1 119 -70 1357 180 168 14 chr4 117242578 117243006 -85085341 + LTR54B LTR ERV1 1 494 -4 925 130 68 0 chr4 117243465 117243627 -85084720 + MER2 DNA MER2_type 1 173 -172 292 204 0 0 chr4 117243714 117243768 -85084579 + MER2 DNA MER2_type 267 320 -25 2179 106 38 0 chr4 117244083 117244375 -85083972 + AluSx SINE Alu 1 303 -9 1832 190 0 0 chr4 117245799 117246094 -85082253 + AluJb SINE Alu 1 295 -17 1188 150 18 44 chr4 117246584 117246810 -85081537 + AluJb SINE Alu 85 304 -8 259 250 0 0 chr4 117246815 117246867 -85081480 + MER5B DNA MER1_type 59 110 -68 34 0 0 0 chr4 117246948 117246982 -85081365 + AT_rich Low_complexity Low_complexity 1 34 0 291 214 34 34 chr4 117246996 117247113 -85081234 - L1MC5 LINE L1 -229 7732 7616 467 149 0 0 chr4 117247153 117247220 -85081127 + AluJ/FLAM SINE Alu 1 67 -245 405 288 151 19 chr4 117247615 117247827 -85080520 + MIR SINE MIR 1 240 -22 2274 108 10 0 chr4 117248221 117248518 -85079829 + AluSq SINE Alu 1 300 -13 588 227 169 7 chr4 117251111 117251265 -85077082 + MER5A DNA MER1_type 9 187 -2 25 31 0 0 chr4 117251466 117251498 -85076849 + AT_rich Low_complexity Low_complexity 1 32 0 5170 158 15 2 chr4 117251498 117253064 -85075283 - L1PB4 LINE L1 -7 6149 4563 2557 140 44 13 chr4 117253205 117253661 -85074686 - MER7C DNA MER2_type -132 470 1 386 307 79 8 chr4 117253662 117253789 -85074558 - MIR3 SINE MIR -13 195 60 237 33 0 0 chr4 117254007 117254037 -85074310 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 548 269 99 25 chr4 117254060 117254110 -85074237 - MIR SINE MIR -30 232 187 408 88 0 0 chr4 117254110 117254167 -85074180 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 548 269 99 25 chr4 117254167 117254317 -85074030 - MIR SINE MIR -75 187 17 2140 56 0 0 chr4 117254785 117255052 -85073295 + L1PA7 LINE L1 5888 6154 0 2268 49 4 0 chr4 117256017 117256283 -85072064 + AluY SINE Alu 37 303 -8 237 220 0 0 chr4 117256362 117256412 -85071935 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 480 269 125 51 chr4 117256424 117256640 -85071707 - MIR SINE MIR -13 249 18 366 248 23 23 chr4 117259008 117259137 -85069210 + C-rich Low_complexity Low_complexity 4 132 0 506 279 31 8 chr4 117259137 117259266 -85069081 + L2 LINE L2 3182 3313 0 1047 171 165 65 chr4 117259354 117259663 -85068684 - MER2 DNA MER2_type -3 341 2 219 234 0 0 chr4 117259982 117260029 -85068318 + GA-rich Low_complexity Low_complexity 1 47 0 263 387 17 38 chr4 117262395 117262633 -85065714 - L2 LINE L2 -623 2691 2459 21 36 0 0 chr4 117262759 117262787 -85065560 + AT_rich Low_complexity Low_complexity 1 28 0 1929 148 10 7 chr4 117262993 117263296 -85065051 + AluJb SINE Alu 1 304 -8 22 0 0 0 chr4 117263478 117263500 -85064847 + AT_rich Low_complexity Low_complexity 1 22 0 652 178 46 0 chr4 117263583 117263735 -85064612 + L1MA8 LINE L1 6128 6286 -5 1805 147 39 9 chr4 117263854 117264188 -85064159 + L1MB2 LINE L1 5826 6169 -2 35 24 0 0 chr4 117267049 117267091 -85061256 + AT_rich Low_complexity Low_complexity 1 42 0 689 213 43 19 chr4 117267160 117267367 -85060980 - Charlie1a DNA MER1_type -985 470 259 958 141 22 54 chr4 117267368 117267553 -85060794 - AluJ SINE Alu -13 299 121 201 82 98 33 chr4 117267553 117267614 -85060733 + (TTTAA)n Simple_repeat Simple_repeat 2 66 0 906 153 0 0 chr4 117267614 117267745 -85060602 - AluJ SINE Alu -181 131 1 2426 96 0 6 chr4 117267750 117268064 -85060283 - AluSx SINE Alu 0 312 1 216 0 0 0 chr4 117268066 117268090 -85060257 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 800 244 59 8 chr4 117268090 117268328 -85060019 - Charlie1a DNA MER1_type -1205 250 1 1220 204 26 0 chr4 117269902 117270133 -85058214 + MER8 DNA MER2_type 1 237 -2 337 269 86 0 chr4 117270319 117270412 -85057935 - L2 LINE L2 -36 3236 3136 186 333 0 88 chr4 117270825 117270972 -85057375 + L2 LINE L2 2764 2897 -417 1434 140 163 0 chr4 117272743 117273000 -85055347 - AluJb SINE Alu -13 299 1 888 216 80 46 chr4 117276025 117276446 -85051901 - MLT1B LTR MaLR -19 371 1 982 197 37 19 chr4 117276551 117276820 -85051527 - MER33 DNA MER1_type -46 278 5 1569 185 12 67 chr4 117277307 117277637 -85050710 + AluJb SINE Alu 1 312 0 924 37 0 0 chr4 117277761 117277868 -85050479 + U6 snRNA snRNA 1 107 0 5533 43 0 1 chr4 117277868 117278539 -85049808 + L1PA5 LINE L1 5478 6147 -7 21 0 0 0 chr4 117278539 117278560 -85049787 + AT_rich Low_complexity Low_complexity 1 21 0 2478 99 0 0 chr4 117282449 117282802 -85045545 - LTR8 LTR ERV1 -106 585 233 1123 182 53 0 chr4 117282856 117282896 -85045451 + AluJb SINE Alu 84 120 -192 2050 55 43 0 chr4 117282896 117283151 -85045196 - AluY SINE Alu -10 301 36 1123 182 53 0 chr4 117283151 117283297 -85045050 + AluJb SINE Alu 120 280 -32 198 0 0 0 chr4 117283303 117283325 -85045022 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 428 267 137 15 chr4 117283833 117283964 -85044383 + MIR SINE MIR 2 148 -114 226 307 30 20 chr4 117284056 117284157 -85044190 - MIR3 SINE MIR -99 109 8 2152 126 3 0 chr4 117285406 117285707 -85042640 + AluSx SINE Alu 1 302 -10 372 309 0 11 chr4 117286228 117286322 -85042025 - MIR3 SINE MIR -1 207 115 806 301 65 0 chr4 117286490 117286736 -85041611 + MIR SINE MIR 1 262 0 1785 185 3 3 chr4 117287648 117287951 -85040396 + AluJb SINE Alu 2 304 -8 4877 109 0 0 chr4 117288094 117288802 -85039545 - L1PA14 LINE L1 0 6161 5454 195 346 19 19 chr4 117289210 117289314 -85039033 + MIR SINE MIR 30 133 -75 301 286 67 8 chr4 117289370 117289489 -85038858 + MIR SINE MIR 55 180 -82 404 202 36 0 chr4 117289532 117289616 -85038731 + L2 LINE L2 3227 3313 0 438 53 0 0 chr4 117289645 117289702 -85038645 + (CA)n Simple_repeat Simple_repeat 1 57 0 200 111 28 0 chr4 117290434 117290470 -85037877 + CT-rich Low_complexity Low_complexity 4 40 0 2061 138 3 13 chr4 117290473 117290778 -85037569 - AluJb SINE Alu -6 306 5 321 89 0 0 chr4 117290879 117290924 -85037423 + MER53 DNA DNA 3 47 -142 21 0 0 0 chr4 117291442 117291463 -85036884 + AT_rich Low_complexity Low_complexity 1 21 0 1508 207 10 24 chr4 117291495 117291785 -85036562 + AluJo SINE Alu 1 286 -26 477 301 28 0 chr4 117291797 117291940 -85036407 + MIR3 SINE MIR 47 193 -15 1641 134 6 110 chr4 117295389 117295725 -85032622 + AluSx SINE Alu 1 301 -11 23 0 0 0 chr4 117295841 117295864 -85032483 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 23 chr4 117295879 117295901 -85032446 + AT_rich Low_complexity Low_complexity 1 22 -21 1541 214 7 3 chr4 117295901 117296186 -85032161 - AluJo SINE Alu -26 286 1 33 0 0 23 chr4 117296186 117296207 -85032140 + AT_rich Low_complexity Low_complexity 22 43 0 1544 172 79 7 chr4 117296219 117296498 -85031849 + AluJb SINE Alu 5 303 -9 27 62 0 0 chr4 117297464 117297512 -85030835 + AT_rich Low_complexity Low_complexity 1 48 0 1529 135 0 53 chr4 117297791 117298057 -85030290 - AluJo SINE Alu 0 312 61 949 233 84 103 chr4 117299697 117300173 -85028174 + MLT2E LTR ERVL 154 620 -8 760 291 68 63 chr4 117300184 117300900 -85027447 + L1M4 LINE L1 3545 4256 -1890 2495 55 0 0 chr4 117300900 117301191 -85027156 + AluY SINE Alu 1 291 -20 760 291 68 63 chr4 117301191 117301397 -85026950 + L1M4 LINE L1 4256 4475 -1671 891 133 0 15 chr4 117301397 117301532 -85026815 + FLAM_C SINE Alu 1 133 0 760 291 68 63 chr4 117301532 117301718 -85026629 + L1M4 LINE L1 4475 4659 -1487 237 286 57 46 chr4 117302278 117302453 -85025894 + L1ME3A LINE L1 1293 1469 -4954 588 266 104 62 chr4 117302463 117302515 -85025832 + L1ME3A LINE L1 1661 1709 -5222 2320 89 3 0 chr4 117302515 117302808 -85025539 + AluSg SINE Alu 1 294 -16 588 266 104 62 chr4 117302808 117302913 -85025434 + L1ME3A LINE L1 1709 1808 -5123 694 155 21 84 chr4 117302913 117303055 -85025292 + FLAM_A SINE Alu 1 133 0 588 266 104 62 chr4 117303055 117303294 -85025053 + L1ME3A LINE L1 1808 2023 -4908 741 181 0 0 chr4 117303407 117303590 -85024757 + FLAM_C SINE Alu 1 183 0 351 314 31 18 chr4 117303605 117303828 -85024519 + L1ME3A LINE L1 2321 2546 -4576 559 301 87 11 chr4 117303863 117303990 -85024357 + L1ME3A LINE L1 5491 5607 -1358 2436 86 3 0 chr4 117303990 117304292 -85024055 + AluSc SINE Alu 1 303 -6 559 301 87 11 chr4 117304292 117304954 -85023393 + L1ME3A LINE L1 5607 6342 -623 307 256 50 59 chr4 117305021 117305259 -85023088 + L1ME3A LINE L1 6522 6757 -208 646 203 95 13 chr4 117305336 117305494 -85022853 + FRAM SINE Alu 1 168 -8 427 327 166 33 chr4 117306725 117307178 -85021169 - L3 LINE CR1 -11 1566 1054 501 264 189 0 chr4 117307638 117307797 -85020550 - MER5A DNA MER1_type 0 189 1 339 259 47 12 chr4 117308042 117308127 -85020220 - L3 LINE CR1 -650 927 840 6446 88 20 0 chr4 117308146 117309511 -85018836 - L1PA10 LINE L1 0 6168 4795 21 0 0 0 chr4 117310825 117310846 -85017501 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 117312227 117312255 -85016092 + AT_rich Low_complexity Low_complexity 1 28 0 1642 221 143 16 chr4 117312505 117313134 -85015213 - L1ME2 LINE L1 -47 6117 5409 2094 123 6 25 chr4 117313134 117313452 -85014895 - AluSx SINE Alu 0 312 1 294 246 90 0 chr4 117313527 117313649 -85014698 - MER113 DNA MER1_type? -387 134 2 1341 167 0 9 chr4 117313693 117313914 -85014433 - AluJo SINE Alu -13 299 81 715 260 20 10 chr4 117314133 117314337 -85014010 + MIR SINE MIR 1 206 -56 2762 120 26 2 chr4 117314518 117314936 -85013411 + MSTA LTR MaLR 1 428 0 1142 261 94 59 chr4 117314936 117315465 -85012882 + MLT1K LTR MaLR 41 588 0 216 0 0 0 chr4 117316503 117316527 -85011820 + (TG)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr4 117316598 117316622 -85011725 + AT_rich Low_complexity Low_complexity 1 24 0 570 334 156 12 chr4 117316628 117317038 -85011309 - L2 LINE L2 0 3272 2804 627 172 0 0 chr4 117317147 117317246 -85011101 - FRAM SINE Alu -20 156 58 622 276 125 14 chr4 117317971 117318285 -85010062 - LTR16A1 LTR ERVL -2 455 93 2388 98 0 9 chr4 117318285 117318600 -85009747 - AluSx SINE Alu 0 312 1 622 276 125 14 chr4 117318600 117318654 -85009693 - LTR16A1 LTR ERVL -364 93 46 622 255 230 0 chr4 117320038 117320234 -85008113 - MIR SINE MIR -5 257 17 26 30 0 0 chr4 117321469 117321502 -85006845 + AT_rich Low_complexity Low_complexity 1 33 0 607 305 11 22 chr4 117321919 117322188 -85006159 + L1MC4 LINE L1 6797 7062 -980 296 270 96 55 chr4 117322232 117322504 -85005843 + L1MC5 LINE L1 6975 7140 -849 1833 168 11 0 chr4 117322504 117322789 -85005558 + AluSx SINE Alu 1 288 -24 296 270 96 55 chr4 117322789 117323158 -85005189 + L1MC5 LINE L1 7140 7493 -496 351 204 145 56 chr4 117323243 117323475 -85004872 + L1MC5 LINE L1 7625 7886 -75 1817 142 3 68 chr4 117323475 117323800 -85004547 - AluJo SINE Alu -8 304 1 351 204 145 56 chr4 117323800 117323836 -85004511 + L1MC5 LINE L1 7886 7917 -44 2091 124 3 0 chr4 117324457 117324768 -85003579 - AluSx SINE Alu 0 312 1 1843 147 46 35 chr4 117324800 117325168 -85003179 - THE1C LTR MaLR 0 375 4 598 220 39 108 chr4 117325974 117326018 -85002329 - MIR SINE MIR -2 260 215 1961 170 12 82 chr4 117326018 117326442 -85001905 + MSTD LTR MaLR 1 394 -2 598 220 39 108 chr4 117326442 117326509 -85001838 - MIR SINE MIR -47 215 145 2232 95 0 0 chr4 117326509 117326816 -85001531 - AluSq SINE Alu 0 307 1 598 220 39 108 chr4 117326816 117326934 -85001413 - MIR SINE MIR -117 145 45 201 132 0 0 chr4 117327077 117327115 -85001232 + (CA)n Simple_repeat Simple_repeat 2 39 0 310 304 200 0 chr4 117327181 117327306 -85001041 - L2 LINE L2 0 3272 3123 180 0 0 0 chr4 117328287 117328307 -85000040 + (A)n Simple_repeat Simple_repeat 1 20 0 1352 184 124 4 chr4 117329006 117329273 -84999074 + AluJb SINE Alu 1 299 -3 261 0 0 0 chr4 117329707 117329736 -84998611 + (A)n Simple_repeat Simple_repeat 1 29 0 2035 109 14 0 chr4 117330692 117330968 -84997379 + AluSg SINE Alu 1 280 -30 21 0 0 0 chr4 117331306 117331327 -84997020 + AT_rich Low_complexity Low_complexity 1 21 0 2461 87 0 0 chr4 117333044 117333354 -84994993 + AluSq SINE Alu 1 310 -3 216 0 0 0 chr4 117334128 117334152 -84994195 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr4 117334947 117334968 -84993379 + AT_rich Low_complexity Low_complexity 1 21 0 561 261 107 33 chr4 117337284 117337499 -84990848 + MIR SINE MIR 22 252 -10 222 309 65 43 chr4 117337537 117337676 -84990671 - MIR3 SINE MIR -24 184 43 1184 169 136 40 chr4 117338386 117338658 -84989689 - AluJo SINE Alu -4 298 1 198 71 0 0 chr4 117338695 117338723 -84989624 + (CAAAA)n Simple_repeat Simple_repeat 4 31 0 2170 95 0 33 chr4 117338959 117339099 -84989248 + AluSx SINE Alu 1 144 -168 2240 94 3 3 chr4 117339099 117339387 -84988960 + AluY SINE Alu 6 293 -18 2170 95 0 33 chr4 117339387 117339552 -84988795 + AluSx SINE Alu 144 296 -16 400 177 31 0 chr4 117341411 117341507 -84986840 + L1MB3 LINE L1 6000 6098 -85 2418 94 0 0 chr4 117343005 117343312 -84985035 + AluSx SINE Alu 1 307 -5 189 0 0 0 chr4 117343632 117343653 -84984694 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 396 101 13 63 chr4 117344109 117344188 -84984159 - MADE1 DNA Mariner 0 80 6 274 167 154 26 chr4 117345762 117345840 -84982507 + L2 LINE L2 3004 3091 -181 220 247 25 86 chr4 117345868 117345949 -84982398 + L2 LINE L2 3195 3270 -2 341 271 108 44 chr4 117346575 117346778 -84981569 + L2 LINE L2 2730 2945 -369 2137 98 0 4 chr4 117346986 117347263 -84981084 - AluSg SINE Alu -5 305 30 211 333 129 54 chr4 117348244 117348430 -84979917 + MIR SINE MIR 49 248 -14 210 118 0 0 chr4 117349187 117349221 -84979126 + (A)n Simple_repeat Simple_repeat 1 34 0 2429 103 0 0 chr4 117349232 117349543 -84978804 + AluSq SINE Alu 1 311 -2 1658 158 3 84 chr4 117349901 117350224 -84978123 - AluJo SINE Alu -15 297 1 1773 185 11 0 chr4 117350781 117351088 -84977259 + AluJb SINE Alu 1 310 0 2420 68 13 10 chr4 117351791 117352100 -84976247 + AluY SINE Alu 1 310 -1 1757 61 4 4 chr4 117352190 117352420 -84975927 - L1PA8 LINE L1 -4 6168 5939 1118 155 5 0 chr4 117352834 117353021 -84975326 - THE1C LTR MaLR 0 375 188 322 268 51 51 chr4 117353052 117353190 -84975157 + L1MC4a LINE L1 5788 5925 -1883 1754 134 48 0 chr4 117354297 117354608 -84973739 + AluSx SINE Alu 1 324 0 464 248 86 0 chr4 117354992 117355109 -84973238 - MIR SINE MIR -73 189 63 258 321 37 9 chr4 117355179 117355288 -84973059 + MER5B DNA MER1_type 2 113 -65 1751 118 152 11 chr4 117356030 117356378 -84971969 + MSTA LTR MaLR 30 426 -2 249 232 101 14 chr4 117356494 117356563 -84971784 + MIR3 SINE MIR 113 187 -21 2208 104 0 0 chr4 117357632 117357919 -84970428 + AluSc SINE Alu 1 287 -22 1177 185 158 3 chr4 117359539 117359836 -84968511 + MER2 DNA MER2_type 2 344 0 233 298 0 0 chr4 117359870 117359927 -84968420 - L2 LINE L2 -2 3311 3255 281 282 57 32 chr4 117359991 117360115 -84968232 - L2 LINE L2 -55 3258 3132 4103 168 52 7 chr4 117360341 117361204 -84967143 + L1MB2 LINE L1 5259 6160 -11 186 258 32 32 chr4 117361232 117361294 -84967053 - L3 LINE CR1 -24 1553 1492 271 312 39 0 chr4 117361785 117361862 -84966485 + Tigger3(Golem) DNA MER2_type 1 80 -2949 41475 47 1 1 chr4 117362037 117368192 -84960155 + L1PA4 LINE L1 2 6153 -2 435 303 125 51 chr4 117368501 117369107 -84959240 - L2 LINE L2 -1 3312 2661 24 53 0 0 chr4 117369117 117369155 -84959192 + AT_rich Low_complexity Low_complexity 1 38 0 213 132 44 22 chr4 117369318 117369409 -84958938 + (TA)n Simple_repeat Simple_repeat 1 93 0 426 115 28 71 chr4 117369503 117370025 -84958322 + (TA)n Simple_repeat Simple_repeat 1 499 0 2362 102 0 0 chr4 117370025 117370328 -84958019 - AluSg SINE Alu -6 304 2 191 296 84 14 chr4 117371095 117371166 -84957181 - MER5A DNA MER1_type -11 178 103 1172 134 158 61 chr4 117371168 117371414 -84956933 - AluJb SINE Alu -22 290 21 273 365 10 10 chr4 117371414 117371518 -84956829 - MER5A DNA MER1_type -84 105 2 180 341 106 32 chr4 117371642 117371765 -84956582 + MIR3 SINE MIR 25 156 -52 21 36 0 0 chr4 117373227 117373255 -84955092 + AT_rich Low_complexity Low_complexity 1 28 0 3201 175 128 1 chr4 117373768 117374419 -84953928 - MER44D DNA MER2_type 0 605 1 1114 227 62 0 chr4 117374711 117374936 -84953411 - MER8 DNA MER2_type 0 239 1 213 271 0 0 chr4 117375281 117375329 -84953018 + GA-rich Low_complexity Low_complexity 1 48 0 496 231 136 7 chr4 117375442 117375589 -84952758 + MIR SINE MIR 97 262 0 2370 101 0 0 chr4 117376033 117376339 -84952008 - AluSc SINE Alu -3 306 1 180 111 0 0 chr4 117378239 117378266 -84950081 + (CA)n Simple_repeat Simple_repeat 2 28 0 596 302 47 22 chr4 117379125 117379403 -84948944 - L2 LINE L2 -55 3258 2974 2074 134 7 0 chr4 117379410 117379700 -84948647 + AluSx SINE Alu 6 297 -15 803 145 8 0 chr4 117379708 117379825 -84948522 + FLAM_C SINE Alu 1 118 -15 528 80 53 0 chr4 117379841 117379954 -84948393 + (TA)n Simple_repeat Simple_repeat 2 120 0 546 189 166 18 chr4 117379971 117380140 -84948207 - L2 LINE L2 -337 2977 2784 2219 110 7 3 chr4 117380635 117380935 -84947412 + AluSx SINE Alu 1 301 -11 524 244 23 15 chr4 117381592 117381723 -84946624 + MER94 DNA DNA 1 132 -2 2348 94 0 0 chr4 117382462 117382759 -84945588 + AluSg1 SINE Alu 1 297 -12 27 29 0 0 chr4 117383124 117383158 -84945189 + AT_rich Low_complexity Low_complexity 1 34 0 2309 105 7 0 chr4 117386472 117386776 -84941571 - AluSx SINE Alu -6 306 1 1355 156 0 5 chr4 117387118 117387330 -84941017 - AluJb SINE Alu -20 292 82 22 0 0 0 chr4 117387429 117387451 -84940896 + AT_rich Low_complexity Low_complexity 1 22 0 1287 184 0 18 chr4 117387886 117388109 -84940238 + AluJb SINE Alu 77 295 -17 702 240 113 65 chr4 117388159 117388278 -84940069 + L1MC5 LINE L1 6623 6735 -1226 2559 66 3 71 chr4 117388278 117388659 -84939688 + THE1A LTR MaLR 1 355 0 702 240 113 65 chr4 117388659 117389018 -84939329 + L1MC5 LINE L1 6735 7124 -837 480 273 163 27 chr4 117389027 117389544 -84938803 + L1MC5 LINE L1 7303 7889 -72 22 80 0 0 chr4 117390008 117390058 -84938289 + AT_rich Low_complexity Low_complexity 1 50 0 1596 140 13 0 chr4 117391515 117391744 -84936603 + AluSq SINE Alu 5 236 -77 3035 121 43 16 chr4 117391761 117392274 -84936073 - MER41B LTR ERV1 -108 527 1 299 180 0 0 chr4 117392742 117392792 -84935555 + L2 LINE L2 3261 3310 -3 221 236 284 8 chr4 117393259 117393386 -84934961 - MIR SINE MIR -13 249 88 240 294 76 42 chr4 117393984 117394103 -84934244 - MIR3 SINE MIR -5 203 81 1738 170 48 7 chr4 117395838 117396132 -84932215 - AluJo SINE Alu -6 306 1 2136 143 0 3 chr4 117398027 117398335 -84930012 + AluSx SINE Alu 1 307 -5 2244 94 0 13 chr4 117398379 117398688 -84929659 + AluY SINE Alu 1 305 -6 1662 177 23 13 chr4 117398734 117399039 -84929308 + AluJo SINE Alu 1 308 -4 692 221 0 0 chr4 117399406 117399537 -84928810 + FLAM_A SINE Alu 1 131 -2 385 295 54 9 chr4 117399826 117399938 -84928409 - L3 LINE CR1 -2 1575 1459 999 107 23 0 chr4 117400864 117400995 -84927352 - AluSq/x SINE Alu -178 134 1 28 48 0 0 chr4 117401024 117401066 -84927281 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr4 117401395 117401417 -84926930 + AT_rich Low_complexity Low_complexity 1 22 0 3909 86 16 21 chr4 117401807 117402375 -84925972 - L1PA10 LINE L1 -1 6167 5603 1982 102 0 0 chr4 117402606 117402871 -84925476 - AluSx SINE Alu -34 278 14 1803 43 0 5 chr4 117403281 117403491 -84924856 + AluY SINE Alu 82 290 -21 1697 169 44 3 chr4 117404165 117404461 -84923886 - AluJb SINE Alu -4 308 1 302 320 83 19 chr4 117404485 117404641 -84923706 + L2 LINE L2 2808 2973 -299 684 89 0 0 chr4 117404963 117405053 -84923294 - AluS SINE Alu -222 90 1 1216 184 85 4 chr4 117405236 117405507 -84922840 - L1MA8 LINE L1 -312 5979 5687 1444 196 23 11 chr4 117405580 117405845 -84922502 + AluJb SINE Alu 1 268 -44 29 0 0 0 chr4 117405857 117405886 -84922461 + AT_rich Low_complexity Low_complexity 1 29 0 906 222 0 0 chr4 117405942 117406113 -84922234 + AluSc SINE Alu 131 301 -8 195 114 0 0 chr4 117407127 117407162 -84921185 + (A)n Simple_repeat Simple_repeat 1 35 0 308 127 0 0 chr4 117407594 117407649 -84920698 - AluY SINE Alu 0 302 248 1573 38 5 0 chr4 117407749 117407933 -84920414 - AluY SINE Alu -73 238 54 715 206 121 40 chr4 117408330 117408529 -84919818 - MER20 DNA MER1_type 0 219 5 702 283 25 17 chr4 117408542 117408779 -84919568 - L2 LINE L2 -1154 2160 1922 573 261 80 11 chr4 117409330 117409506 -84918841 + MLT1D LTR MaLR 3 190 -315 1610 174 44 12 chr4 117409520 117409860 -84918487 + MLT1D LTR MaLR 135 485 -20 740 200 0 0 chr4 117410001 117410126 -84918221 - FLAM_C SINE Alu -18 125 1 224 135 0 19 chr4 117410499 117410551 -84917796 + (TG)n Simple_repeat Simple_repeat 2 52 0 835 210 17 23 chr4 117410773 117410949 -84917398 + FAM SINE Alu 1 175 0 645 113 0 0 chr4 117411181 117411278 -84917069 - AluSx SINE Alu -13 296 200 1141 68 0 0 chr4 117411296 117411429 -84916918 - AluSx SINE Alu -179 133 1 271 345 79 20 chr4 117411700 117411903 -84916444 + L2 LINE L2 2313 2527 -787 224 254 107 32 chr4 117411915 117412042 -84916305 - MIR SINE MIR -72 136 20 2329 105 7 0 chr4 117412111 117412416 -84915931 - AluSq SINE Alu -6 307 1 1545 207 58 56 chr4 117412673 117413171 -84915176 - MLT1D LTR MaLR -2 503 5 268 169 48 84 chr4 117414116 117414199 -84914148 + LTR33A LTR ERVL 444 523 0 870 160 0 0 chr4 117414359 117414484 -84913863 + FLAM_C SINE Alu 1 125 -18 203 0 0 36 chr4 117414488 117414516 -84913831 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1850 173 0 0 chr4 117414764 117415071 -84913276 + AluJb SINE Alu 1 307 0 2129 143 0 0 chr4 117415291 117415591 -84912756 + AluY SINE Alu 2 301 -10 2471 62 3 3 chr4 117416012 117416317 -84912030 - AluY SINE Alu -6 305 1 1295 248 41 56 chr4 117416856 117417336 -84911011 + L1MEc LINE L1 1790 2238 -3977 1982 168 0 0 chr4 117417336 117417646 -84910701 + AluJb SINE Alu 1 310 -2 1295 248 41 56 chr4 117417646 117417943 -84910404 + L1MEc LINE L1 2238 2538 -3677 29 59 0 15 chr4 117418003 117418033 -84910314 + AT_rich Low_complexity Low_complexity 1 30 -37 1943 139 0 33 chr4 117418033 117418336 -84910011 + AluJb SINE Alu 1 293 -19 29 59 0 15 chr4 117418336 117418373 -84909974 + AT_rich Low_complexity Low_complexity 30 67 0 476 334 111 11 chr4 117418373 117418726 -84909621 + L1M4 LINE L1 2269 2656 -3490 2192 130 3 0 chr4 117418776 117419075 -84909272 + AluSx SINE Alu 3 302 -10 1452 117 19 0 chr4 117419076 117419307 -84909040 + AluSg/x SINE Alu 74 308 0 735 108 70 39 chr4 117419528 117419657 -84908690 - FLAM_C SINE Alu 0 133 1 2084 136 0 0 chr4 117419812 117420134 -84908213 + AluSx SINE Alu 1 312 0 21 0 0 0 chr4 117420316 117420337 -84908010 + AT_rich Low_complexity Low_complexity 1 21 0 1784 178 0 48 chr4 117420361 117420675 -84907672 - AluJb SINE Alu -13 299 1 1007 148 0 0 chr4 117420676 117420818 -84907529 - AluJb SINE Alu -170 142 1 396 110 24 24 chr4 117420820 117420902 -84907445 + L1 LINE L1 4608 4689 -1457 999 178 0 17 chr4 117420987 117421161 -84907186 - FRAM SINE Alu -5 171 1 888 186 0 6 chr4 117421289 117421445 -84906902 - FRAM SINE Alu -22 154 1 215 226 53 62 chr4 117421830 117421947 -84906400 + MIR SINE MIR 19 133 -75 2403 58 0 61 chr4 117422486 117422816 -84905531 + AluY SINE Alu 1 310 -1 2103 121 13 0 chr4 117422896 117423194 -84905153 + AluSx SINE Alu 2 303 -9 1187 208 140 4 chr4 117423920 117424184 -84904163 - AluJb SINE Alu -2 300 1 3503 140 51 36 chr4 117424732 117425383 -84902964 - LTR62 LTR ERVK -3 716 53 2019 133 10 3 chr4 117425383 117425676 -84902671 - AluSg SINE Alu -15 295 1 3503 140 51 36 chr4 117425676 117425716 -84902631 - LTR62 LTR ERVK -666 53 15 24 32 0 0 chr4 117425961 117425992 -84902355 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr4 117426235 117426265 -84902082 + AT_rich Low_complexity Low_complexity 1 30 0 749 277 0 0 chr4 117426858 117427064 -84901283 - L1ME3 LINE L1 0 6162 5957 1233 207 115 15 chr4 117428849 117429119 -84899228 - AluSg1 SINE Alu -12 297 1 696 98 0 0 chr4 117429149 117429278 -84899069 - AluSg/x SINE Alu 0 318 190 1411 164 0 9 chr4 117429404 117429617 -84898730 - AluJb SINE Alu -101 211 1 217 274 105 11 chr4 117429915 117430010 -84898337 + MER5A DNA MER1_type 3 106 -83 2417 101 0 0 chr4 117430398 117430705 -84897642 + AluSg SINE Alu 1 307 -3 21 0 0 0 chr4 117430912 117430933 -84897414 + AT_rich Low_complexity Low_complexity 1 21 0 545 308 110 57 chr4 117431033 117431197 -84897150 - L2 LINE L2 0 3272 3118 890 137 0 0 chr4 117431197 117431328 -84897019 + FLAM_C SINE Alu 1 131 -2 545 308 110 57 chr4 117431328 117431717 -84896630 - L2 LINE L2 -154 3118 2689 238 71 24 0 chr4 117432238 117432280 -84896067 + MADE1 DNA Mariner 1 43 -37 27 81 0 0 chr4 117432432 117432494 -84895853 + AT_rich Low_complexity Low_complexity 1 62 0 231 349 24 24 chr4 117432941 117433067 -84895280 + MLT1J LTR MaLR 277 402 -109 2310 95 3 10 chr4 117433163 117433467 -84894880 - AluSc SINE Alu -7 302 1 239 273 33 107 chr4 117434917 117435038 -84893309 - MER5A DNA MER1_type -77 112 1 209 296 131 73 chr4 117435326 117435817 -84892530 - L2 LINE L2 -454 2860 2399 1795 130 19 55 chr4 117435817 117436125 -84892222 + AluSx SINE Alu 1 297 -15 209 296 131 73 chr4 117436125 117436511 -84891836 - L2 LINE L2 -915 2399 1932 233 151 151 19 chr4 117436572 117436625 -84891722 - L2 LINE L2 0 3272 3213 353 300 95 29 chr4 117437320 117437530 -84890817 - L2 LINE L2 -96 3217 2994 1764 178 21 0 chr4 117437951 117438238 -84890109 + AluJo SINE Alu 1 293 -19 393 320 73 41 chr4 117438488 117438707 -84889640 - MIR SINE MIR -8 254 29 204 269 140 0 chr4 117441195 117441280 -84887067 - MIR SINE MIR -67 141 53 612 328 64 33 chr4 117441575 117442029 -84886318 - L2 LINE L2 -2 3311 2844 23 0 0 0 chr4 117442207 117442230 -84886117 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 117442411 117442434 -84885913 + AT_rich Low_complexity Low_complexity 1 23 0 204 97 0 0 chr4 117443686 117443717 -84884630 + (TTA)n Simple_repeat Simple_repeat 2 32 0 474 143 9 67 chr4 117443717 117443822 -84884525 - FRAM SINE Alu -28 148 50 37 23 0 0 chr4 117444023 117444067 -84884280 + AT_rich Low_complexity Low_complexity 1 44 0 844 116 0 0 chr4 117444129 117444250 -84884097 - THE1B LTR MaLR 0 364 244 2367 94 3 0 chr4 117444336 117444635 -84883712 - AluSp SINE Alu -13 300 1 301 95 16 71 chr4 117444909 117445035 -84883312 + (TATTG)n Simple_repeat Simple_repeat 2 120 0 312 157 41 35 chr4 117445037 117445209 -84883138 + (CATATA)n Simple_repeat Simple_repeat 3 175 0 2129 76 90 0 chr4 117445349 117445626 -84882721 - AluY SINE Alu -9 302 1 186 43 0 0 chr4 117446435 117446458 -84881889 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 233 264 0 19 chr4 117446918 117446971 -84881376 + MER5A DNA MER1_type 138 189 0 2477 70 7 0 chr4 117447055 117447356 -84880991 + AluSp SINE Alu 1 303 -10 22 35 0 0 chr4 117447751 117447780 -84880567 + AT_rich Low_complexity Low_complexity 1 29 0 309 248 184 0 chr4 117448839 117448948 -84879399 + MIR SINE MIR 23 151 -111 1911 164 68 34 chr4 117449173 117449643 -84878704 + L1PB4 LINE L1 4536 5021 -1125 2256 112 0 0 chr4 117449986 117450282 -84878065 + AluSx SINE Alu 1 296 -16 1182 189 28 11 chr4 117450576 117450862 -84877485 + L1PB4 LINE L1 5010 5300 -846 1207 158 0 6 chr4 117450871 117451054 -84877293 + AluJb SINE Alu 88 269 -43 342 0 0 0 chr4 117451057 117451095 -84877252 + (CA)n Simple_repeat Simple_repeat 2 39 0 907 158 22 3 chr4 117451098 117451109 -84877238 + L1PB4 LINE L1 5292 5301 -855 2194 94 24 3 chr4 117451109 117451406 -84876941 + AluSq SINE Alu 1 303 -10 907 158 22 3 chr4 117451406 117451596 -84876751 + L1PB4 LINE L1 5301 5491 -665 2886 78 41 33 chr4 117451601 117452060 -84876287 + L1MA2 LINE L1 5842 6304 0 3087 158 50 33 chr4 117452069 117452133 -84876214 + L1PB4 LINE L1 5474 5535 -621 2049 145 0 3 chr4 117452133 117452436 -84875911 - AluJb SINE Alu -10 302 1 3087 158 50 33 chr4 117452436 117453037 -84875310 + L1PB4 LINE L1 5535 6150 -6 829 176 0 0 chr4 117453361 117453486 -84874861 - FLAM_C SINE Alu -18 125 1 2354 91 0 0 chr4 117454035 117454332 -84874015 + AluSx SINE Alu 1 297 -15 2119 107 45 28 chr4 117454431 117454786 -84873561 - MER46B DNA MER2_type 0 236 1 608 324 5 10 chr4 117454975 117455182 -84873165 + MIR SINE MIR 2 207 -55 382 219 0 42 chr4 117455898 117455994 -84872353 - MER5A DNA MER1_type -83 106 15 21 0 0 0 chr4 117456994 117457015 -84871332 + AT_rich Low_complexity Low_complexity 1 21 0 1145 188 18 18 chr4 117457345 117457520 -84870827 - AluJo SINE Alu -4 308 131 2065 142 3 0 chr4 117457520 117457829 -84870518 - AluSx SINE Alu -2 310 1 1145 188 18 18 chr4 117457829 117457876 -84870471 - AluJo SINE Alu -180 132 86 210 273 0 91 chr4 117459117 117459194 -84869153 - MER5B DNA MER1_type -108 70 1 1780 169 20 0 chr4 117459684 117459979 -84868368 + AluJo SINE Alu 1 301 -11 2294 101 0 0 chr4 117460663 117460959 -84867388 + AluSx SINE Alu 1 296 -16 215 308 15 0 chr4 117460989 117461054 -84867293 - L2 LINE L2 -2 3270 3205 244 185 0 0 chr4 117461825 117461879 -84866468 - LTR66 LTR ERVL -163 447 394 306 164 0 0 chr4 117461881 117461936 -84866411 + (TA)n Simple_repeat Simple_repeat 2 56 0 2400 99 0 0 chr4 117461936 117462238 -84866109 - AluSq SINE Alu -11 302 1 251 315 139 9 chr4 117462480 117462588 -84865759 - L2 LINE L2 0 3272 3151 304 270 57 75 chr4 117463084 117463243 -84865104 - L1MC/D LINE L1 -2325 5483 5328 312 48 0 0 chr4 117463373 117463415 -84864932 + (CA)n Simple_repeat Simple_repeat 2 43 0 336 277 108 50 chr4 117464332 117464592 -84863755 + L1MC4a LINE L1 5650 5924 -1884 2918 189 50 5 chr4 117464613 117465232 -84863115 - MER82 DNA MER2_type -1 652 6 1773 159 20 14 chr4 117465626 117465921 -84862426 - AluJo SINE Alu -15 297 1 356 348 132 15 chr4 117466056 117466260 -84862087 - MIR SINE MIR -1 261 34 694 289 127 25 chr4 117466435 117466798 -84861549 + L2 LINE L2 2910 3309 -4 459 315 94 5 chr4 117467355 117467558 -84860789 - MIR SINE MIR -14 248 28 1759 133 98 3 chr4 117467760 117468045 -84860302 + AluJb SINE Alu 1 312 0 1027 174 0 0 chr4 117468121 117468282 -84860065 - AluJb SINE Alu -18 294 134 237 229 168 76 chr4 117468863 117468994 -84859353 + MIR3 SINE MIR 2 144 -64 2137 88 10 10 chr4 117469607 117469901 -84858446 + AluSc SINE Alu 1 294 -15 417 149 0 0 chr4 117470811 117470878 -84857469 - AluJo SINE Alu -14 298 232 846 142 118 12 chr4 117470878 117470930 -84857417 - AluJo SINE Alu -125 187 142 489 17 0 0 chr4 117470930 117470988 -84857359 + (TATG)n Simple_repeat Simple_repeat 3 60 0 846 142 118 12 chr4 117470988 117471104 -84857243 - AluJo SINE Alu -170 142 1 1841 162 10 13 chr4 117471502 117471804 -84856543 + AluSx SINE Alu 1 301 -11 497 285 176 0 chr4 117472006 117472199 -84856148 + MIR SINE MIR 34 260 -2 1215 169 0 0 chr4 117472240 117472424 -84855923 - AluJb SINE Alu -22 290 107 409 136 0 0 chr4 117472424 117472483 -84855864 - AluS SINE Alu -259 59 1 2381 104 0 0 chr4 117472500 117472808 -84855539 - AluSx SINE Alu -4 308 1 2226 113 3 31 chr4 117473010 117473380 -84854967 - AluSq SINE Alu 0 361 1 1712 232 71 0 chr4 117473619 117474058 -84854289 - MER82 DNA MER2_type 0 653 184 * 3311 169 50 74 chr4 117474056 117474391 -84853956 + MER21A LTR ERV1 5 347 -584 2066 108 7 11 chr4 117474391 117474710 -84853637 + AluSq SINE Alu 1 318 0 3311 169 50 74 chr4 117474710 117474941 -84853406 + MER21A LTR ERV1 347 582 -349 1711 173 16 7 chr4 117474941 117475247 -84853100 - AluJo SINE Alu -1 311 3 3311 169 50 74 chr4 117475247 117475577 -84852770 + MER21A LTR ERV1 582 925 -6 914 216 5 5 chr4 117475589 117475779 -84852568 - MER82 DNA MER2_type -463 190 1 252 0 0 0 chr4 117476968 117476996 -84851351 + (TAA)n Simple_repeat Simple_repeat 3 30 0 1655 67 36 0 chr4 117477066 117477290 -84851057 + L1PA14 LINE L1 5928 6159 -2 21 89 0 0 chr4 117477377 117477433 -84850914 + AT_rich Low_complexity Low_complexity 1 56 0 2073 136 0 7 chr4 117477455 117477756 -84850591 - AluSx SINE Alu -13 299 1 37 52 0 0 chr4 117478292 117478350 -84849997 + AT_rich Low_complexity Low_complexity 1 58 0 1955 141 7 0 chr4 117478392 117478682 -84849665 + AluSx SINE Alu 1 292 -20 193 234 108 63 chr4 117478693 117478804 -84849543 + MIR SINE MIR 122 237 -25 426 200 227 33 chr4 117478853 117479003 -84849344 - MIR SINE MIR -54 208 30 2115 131 3 0 chr4 117479441 117479753 -84848594 - AluSg SINE Alu 0 313 1 2285 74 14 0 chr4 117480043 117480327 -84848020 - AluSp SINE Alu -25 288 1 1507 219 7 7 chr4 117480455 117480742 -84847605 + AluJo SINE Alu 6 292 -20 185 0 40 0 chr4 117480748 117480773 -84847574 + (TAA)n Simple_repeat Simple_repeat 2 27 0 606 282 135 15 chr4 117480864 117481130 -84847217 + MLT1L LTR MaLR 310 607 -8 1900 127 13 42 chr4 117481559 117481866 -84846481 + AluSg SINE Alu 1 298 -12 1342 176 18 0 chr4 117481868 117482089 -84846258 + AluJo SINE Alu 1 225 -87 2246 113 0 3 chr4 117482516 117482809 -84845538 + AluSq SINE Alu 1 292 -21 180 135 0 0 chr4 117483654 117483691 -84844656 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 1454 152 13 113 chr4 117483695 117484005 -84844342 - AluJo SINE Alu -33 279 1 1699 206 0 3 chr4 117484148 117484444 -84843903 + AluJo SINE Alu 1 295 -17 1778 163 0 7 chr4 117484458 117484740 -84843607 + AluJb SINE Alu 1 280 -32 180 0 0 0 chr4 117484740 117484760 -84843587 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2450 70 3 0 chr4 117485920 117486219 -84842128 + AluSp SINE Alu 1 300 -13 499 134 0 35 chr4 117486236 117486390 -84841957 + MER4E LTR ERV1 1 191 -588 1742 178 47 18 chr4 117486477 117486864 -84841483 + MER4D LTR ERV1 506 903 0 1516 173 83 4 chr4 117487015 117487273 -84841074 + AluJb SINE Alu 1 284 -28 189 0 0 0 chr4 117487273 117487294 -84841053 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1516 173 83 4 chr4 117487294 117487313 -84841034 + AluJb SINE Alu 284 300 -12 270 330 203 4 chr4 117487331 117487558 -84840789 + L3 LINE CR1 274 545 -1032 182 344 0 0 chr4 117487824 117487888 -84840459 - L2 LINE L2 -556 2758 2695 194 277 43 75 chr4 117488236 117488330 -84840017 + MER5A DNA MER1_type 77 167 -22 2272 113 0 0 chr4 117489203 117489513 -84838834 + AluSg SINE Alu 1 310 0 252 146 0 0 chr4 117489781 117489829 -84838518 + Charlie2a DNA MER1_type 742 789 -2073 1947 134 53 0 chr4 117489833 117490116 -84838231 + AluSx SINE Alu 4 301 -11 495 123 0 0 chr4 117490116 117490197 -84838150 + (TA)n Simple_repeat Simple_repeat 2 82 0 409 217 94 0 chr4 117490224 117490362 -84837985 + Charlie2a DNA MER1_type 821 971 -1891 396 205 170 0 chr4 117490370 117490482 -84837865 + Charlie2a DNA MER1_type 2731 2861 -1 1737 108 56 4 chr4 117490759 117491008 -84837339 + AluSq SINE Alu 39 300 -13 186 200 40 20 chr4 117491012 117491062 -84837285 + MIR SINE MIR 187 237 -25 227 299 64 32 chr4 117491114 117491271 -84837076 + L1ME4a LINE L1 5960 6121 0 2260 92 10 13 chr4 117491900 117492206 -84836141 + AluSp SINE Alu 1 305 -8 1722 159 3 25 chr4 117492295 117492578 -84835769 + AluJo SINE Alu 6 282 -30 221 0 0 33 chr4 117492588 117492599 -84835748 + (GA)n Simple_repeat Simple_repeat 2 12 -18 2154 114 3 23 chr4 117492599 117492907 -84835440 + AluSx SINE Alu 1 302 -10 221 0 0 33 chr4 117492907 117492925 -84835422 + (GA)n Simple_repeat Simple_repeat 12 30 0 2452 71 3 0 chr4 117492981 117493276 -84835071 + AluY SINE Alu 1 296 -15 2179 103 0 0 chr4 117493798 117494099 -84834248 - AluSx SINE Alu 0 301 1 2126 128 3 10 chr4 117494101 117494413 -84833934 - AluSx SINE Alu -2 310 1 479 105 145 0 chr4 117495004 117495080 -84833267 + AluSq SINE Alu 151 237 -76 2196 128 3 0 chr4 117495202 117495514 -84832833 + AluSq SINE Alu 1 313 0 21 0 0 0 chr4 117495948 117495969 -84832378 + AT_rich Low_complexity Low_complexity 1 21 0 1955 145 3 0 chr4 117496616 117496923 -84831424 + AluSx SINE Alu 1 308 0 1708 79 0 9 chr4 117498498 117498713 -84829634 - AluSq SINE Alu -100 213 1 21 0 0 0 chr4 117498713 117498734 -84829613 + AT_rich Low_complexity Low_complexity 1 21 0 249 33 0 0 chr4 117502333 117502363 -84825984 + (CCCCCA)n Simple_repeat Simple_repeat 4 33 0 2193 108 7 0 chr4 117503019 117503324 -84825023 + AluSx SINE Alu 1 307 -5 2062 105 54 10 chr4 117503483 117503778 -84824569 - AluSg SINE Alu -2 308 1 182 264 38 0 chr4 117503902 117503955 -84824392 + L2 LINE L2 3257 3311 -2 1453 161 62 0 chr4 117504007 117504249 -84824098 + AluJb SINE Alu 35 291 -21 2171 126 0 0 chr4 117504451 117504744 -84823603 - AluSx SINE Alu -19 293 1 242 309 218 13 chr4 117504773 117505149 -84823198 - L2 LINE L2 -54 3259 2807 1680 154 0 35 chr4 117505323 117505609 -84822738 + AluJb SINE Alu 13 288 -24 566 194 136 61 chr4 117505694 117505973 -84822374 - LTR21B LTR ERV1 0 438 139 2113 310 22 21 chr4 117506062 117506420 -84821927 - HERVFH21 LTR ERV1 0 6529 6173 207 0 0 0 chr4 117506420 117506443 -84821904 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2113 310 22 21 chr4 117506443 117506951 -84821396 - HERVFH21 LTR ERV1 -356 6173 5662 279 221 89 82 chr4 117507129 117507287 -84821060 + L1MC4a LINE L1 5752 5910 -1898 819 246 138 11 chr4 117507352 117507620 -84820727 + AluJb SINE Alu 1 302 0 1941 104 0 4 chr4 117508143 117508403 -84819944 + AluSg SINE Alu 38 296 -14 1786 161 6 25 chr4 117508565 117508881 -84819466 - AluJo SINE Alu -2 310 1 1266 199 118 148 chr4 117509391 117509899 -84818448 - MLT1C LTR MaLR -6 499 7 342 319 67 0 chr4 117509953 117510088 -84818259 - MIR SINE MIR -107 155 12 492 288 109 31 chr4 117510571 117510800 -84817547 - MIR SINE MIR 0 262 16 1440 161 36 76 chr4 117510892 117511013 -84817334 + AluJo SINE Alu 3 127 -185 2012 145 0 0 chr4 117511013 117511332 -84817015 - AluSx SINE Alu 0 319 1 1440 161 36 76 chr4 117511332 117511513 -84816834 + AluJo SINE Alu 127 294 -18 2149 117 3 10 chr4 117512039 117512339 -84816008 - AluSg SINE Alu -12 298 1 276 256 30 133 chr4 117512672 117512875 -84815472 + MIR SINE MIR 70 251 -11 2485 86 0 0 chr4 117513190 117513494 -84814853 + AluSg SINE Alu 1 304 -6 2170 107 43 0 chr4 117513592 117513892 -84814455 - AluSp SINE Alu 0 313 1 698 161 0 0 chr4 117513892 117514004 -84814343 - AluSx SINE Alu -18 292 181 891 110 8 0 chr4 117514004 117514122 -84814225 - AluSx SINE Alu -169 143 25 2216 111 0 10 chr4 117514314 117514642 -84813705 + AluSq SINE Alu 4 313 0 1073 167 12 67 chr4 117515571 117515621 -84812726 + AluJb SINE Alu 86 137 -234 2695 48 0 0 chr4 117515621 117515932 -84812415 + AluY SINE Alu 1 311 0 1073 167 12 67 chr4 117515932 117516180 -84812167 + AluJb SINE Alu 137 371 0 606 193 0 9 chr4 117516320 117516434 -84811913 - FRAM SINE Alu -24 152 40 1755 158 0 43 chr4 117516612 117516915 -84811432 - AluJb SINE Alu -16 296 7 650 256 25 40 chr4 117516948 117517036 -84811311 + MIR3 SINE MIR 6 94 -114 2181 185 64 60 chr4 117517036 117517094 -84811253 - MLT2B1 LTR ERVL 0 520 464 2323 106 0 3 chr4 117517094 117517396 -84810951 + AluSx SINE Alu 2 302 -10 2181 185 64 60 chr4 117517396 117517532 -84810815 - MLT2B1 LTR ERVL -56 464 330 2107 121 22 26 chr4 117517532 117517845 -84810502 + AluSx SINE Alu 1 312 0 2181 185 64 60 chr4 117517845 117518167 -84810180 - MLT2B1 LTR ERVL -190 330 1 650 256 25 40 chr4 117518167 117518277 -84810070 + MIR3 SINE MIR 94 201 -7 3428 143 33 41 chr4 117518951 117519325 -84809022 - LTR26 LTR ERV1 0 603 234 2384 103 0 0 chr4 117519325 117519635 -84808712 - AluSg SINE Alu 0 310 1 3428 143 33 41 chr4 117519635 117519868 -84808479 - LTR26 LTR ERV1 -369 234 1 183 129 0 0 chr4 117519945 117519976 -84808371 + (TTTC)n Simple_repeat Simple_repeat 3 33 0 377 262 29 0 chr4 117519994 117520097 -84808250 + MLT1K LTR MaLR 143 248 -340 2523 108 6 3 chr4 117520705 117521058 -84807289 - THE1A LTR MaLR -1 354 1 11598 97 13 0 chr4 117521058 117522618 -84805729 - THE1A-int LTR MaLR 0 1580 1 2702 91 3 3 chr4 117522618 117522971 -84805376 - THE1A LTR MaLR 0 355 3 702 164 0 0 chr4 117523420 117523530 -84804817 - AluJb SINE Alu -5 307 198 1242 194 157 42 chr4 117523530 117523988 -84804359 - LTR1B LTR ERV1 0 785 279 303 28 0 0 chr4 117523993 117524029 -84804318 + (TTCTC)n Simple_repeat Simple_repeat 2 37 0 1169 110 48 62 chr4 117524037 117524246 -84804101 - LTR1B LTR ERV1 -620 206 1 399 206 0 0 chr4 117524246 117524311 -84804036 - FLAM_A SINE Alu -67 65 1 2031 141 3 3 chr4 117524315 117524612 -84803735 - AluSx SINE Alu -15 297 1 207 167 0 0 chr4 117524698 117524740 -84803607 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 339 320 48 44 chr4 117525074 117525280 -84803067 - MIR SINE MIR -24 238 32 1060 167 0 0 chr4 117525290 117525446 -84802901 - AluSg/x SINE Alu -20 290 135 558 213 128 6 chr4 117525535 117525699 -84802648 + MIR SINE MIR 66 249 -13 180 309 109 64 chr4 117525748 117525858 -84802489 - L2 LINE L2 -234 3038 2924 204 292 142 0 chr4 117525869 117525989 -84802358 - MIR SINE MIR 0 262 126 2363 175 48 57 chr4 117526389 117526954 -84801393 + L1MB8 LINE L1 5619 6178 0 1996 122 6 45 chr4 117527113 117527425 -84800922 - AluSx SINE Alu -11 301 2 545 189 49 14 chr4 117527775 117527918 -84800429 + MER65A LTR ERV1 1 148 -297 198 0 0 0 chr4 117528040 117528062 -84800285 + (T)n Simple_repeat Simple_repeat 1 22 0 206 250 16 16 chr4 117528422 117528486 -84799861 - L2 LINE L2 -217 3055 2992 261 352 39 0 chr4 117528573 117528701 -84799646 + MIR SINE MIR 46 178 -84 2332 108 0 0 chr4 117528766 117529072 -84799275 - AluSx SINE Alu -6 306 1 460 259 58 99 chr4 117529459 117529652 -84798695 - Charlie8 DNA MER1_type -1917 500 322 2405 90 3 0 chr4 117529652 117529952 -84798395 + AluSq SINE Alu 1 301 -12 460 259 58 99 chr4 117529952 117530052 -84798295 - Charlie8 DNA MER1_type -2095 322 219 323 109 0 0 chr4 117530093 117530139 -84798208 - MADE1 DNA Mariner 0 80 35 521 154 9 55 chr4 117530145 117530255 -84798092 + FLAM_C SINE Alu 39 143 0 495 232 24 154 chr4 117530258 117530373 -84797974 - Charlie8 DNA MER1_type -124 217 89 1636 158 3 41 chr4 117530373 117530690 -84797657 + AluJb SINE Alu 1 306 0 2131 138 3 3 chr4 117530690 117531002 -84797345 + AluSx SINE Alu 1 312 0 495 232 24 154 chr4 117531002 117531039 -84797308 - Charlie8 DNA MER1_type -251 90 50 737 218 0 0 chr4 117531039 117531172 -84797175 - FLAM_C SINE Alu 0 133 1 495 232 24 154 chr4 117531172 117531261 -84797086 - Charlie8 DNA MER1_type -291 50 4 216 97 0 0 chr4 117531378 117531409 -84796938 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 241 233 200 0 chr4 117531528 117531618 -84796729 - L2 LINE L2 -831 2483 2376 2080 113 3 11 chr4 117531656 117531972 -84796375 + AluSx SINE Alu 1 314 0 2384 145 23 16 chr4 117532429 117532695 -84795652 - MLT1B LTR MaLR 0 390 119 2658 91 8 8 chr4 117532695 117533059 -84795288 - THE1B LTR MaLR 0 364 1 2384 145 23 16 chr4 117533059 117533179 -84795168 - MLT1B LTR MaLR -271 119 1 503 296 79 5 chr4 117533794 117533983 -84794364 - MIR SINE MIR -14 248 46 1842 183 0 0 chr4 117534235 117534524 -84793823 + AluJb SINE Alu 1 289 -23 189 0 0 0 chr4 117534563 117534584 -84793763 + (TC)n Simple_repeat Simple_repeat 2 22 0 2078 131 3 0 chr4 117534584 117534875 -84793472 - AluSg SINE Alu -18 292 1 2029 131 11 3 chr4 117534985 117535291 -84793056 - AluSx SINE Alu 0 308 1 361 370 39 15 chr4 117535471 117535674 -84792673 - L2 LINE L2 -196 3076 2869 1464 153 0 0 chr4 117535791 117536013 -84792334 + AluJo SINE Alu 87 308 -4 422 130 0 13 chr4 117536013 117536090 -84792257 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 180 287 91 39 chr4 117536090 117536376 -84791971 - L2 LINE L2 -650 2664 2364 * 317 286 123 35 chr4 117536375 117536546 -84791801 + MIR SINE MIR 7 192 -70 846 203 0 0 chr4 117537047 117537282 -84791065 + (TG)n Simple_repeat Simple_repeat 1 235 0 223 227 53 0 chr4 117537285 117537360 -84790987 + (TGGA)n Simple_repeat Simple_repeat 1 79 0 2238 122 0 0 chr4 117637445 117637741 -84690606 - AluSx SINE Alu -16 296 1 207 0 0 0 chr4 117638355 117638378 -84689969 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2289 94 7 3 chr4 117638787 117639084 -84689263 - AluSq SINE Alu -15 298 1 459 277 23 0 chr4 117639247 117639377 -84688970 - MER33 DNA MER1_type -191 133 1 852 226 0 0 chr4 117639431 117639595 -84688752 + FRAM SINE Alu 1 158 -18 256 275 38 0 chr4 117639842 117639922 -84688425 + L1ME LINE L1 5400 5482 -639 260 314 93 31 chr4 117639993 117640187 -84688160 - L2 LINE L2 -787 2527 2322 675 140 0 0 chr4 117640190 117640283 -84688064 + U6 snRNA snRNA 1 93 -14 244 143 71 36 chr4 117640762 117640846 -84687501 + Zaphod DNA AcHobo 671 757 -3274 27960 41 1 1 chr4 117640879 117645914 -84682433 - HERV17 LTR ERV1 -1633 6993 1952 250 159 0 23 chr4 117645901 117645945 -84682402 - HERV17 LTR ERV1 -8583 43 1 * 3897 63 44 4 chr4 117645945 117646450 -84681897 - LTR17 LTR ERV1 0 780 256 64 43 0 0 chr4 117646451 117646543 -84681804 + AT_rich Low_complexity Low_complexity 1 92 0 1660 190 7 3 chr4 117646543 117646832 -84681515 + AluSq SINE Alu 1 290 -23 198 71 0 0 chr4 117646839 117646867 -84681480 + (CAA)n Simple_repeat Simple_repeat 2 29 0 2054 131 25 42 chr4 117646868 117647337 -84681010 + L1MA9 LINE L1 5139 5609 -703 893 193 0 0 chr4 117647342 117647492 -84680855 + FRAM SINE Alu 5 154 -22 3441 159 63 0 chr4 117647499 117647620 -84680727 + L1MA9 LINE L1 5652 5764 -548 186 43 0 0 chr4 117647620 117647643 -84680704 + (CA)n Simple_repeat Simple_repeat 1 23 0 3441 159 63 0 chr4 117647643 117647995 -84680352 + L1MA9 LINE L1 5764 6176 -136 198 0 0 0 chr4 117647995 117648017 -84680330 + (CA)n Simple_repeat Simple_repeat 1 22 0 3441 159 63 0 chr4 117648017 117648164 -84680183 + L1MA9 LINE L1 6176 6312 0 1097 165 125 18 chr4 117648186 117648458 -84679889 - MER33 DNA MER1_type -22 302 2 1076 207 73 19 chr4 117648467 117648781 -84679566 + Zaphod DNA AcHobo 3595 3925 -106 851 195 6 0 chr4 117648840 117649034 -84679313 - AluJo SINE Alu 0 317 123 928 127 8 0 chr4 117649046 117649172 -84679175 + FLAM_C SINE Alu 1 127 -6 444 242 40 0 chr4 117649173 117649272 -84679075 + Zaphod DNA AcHobo 3929 4031 0 221 363 38 0 chr4 117649272 117649352 -84678995 + L2 LINE L2 2957 3039 -274 1780 165 46 108 chr4 117649352 117649850 -84678497 + MER110A LTR ERV1 1 467 -1 2144 113 0 13 chr4 117649915 117650225 -84678122 - AluSx SINE Alu -6 306 1 720 70 0 0 chr4 117650225 117650311 -84678036 - AluS SINE Alu -226 87 2 1440 130 0 32 chr4 117650590 117650806 -84677541 - AluJo SINE Alu -41 271 63 467 253 141 21 chr4 117651348 117651425 -84676922 - LTR50 LTR ERVL 0 795 729 2020 118 7 20 chr4 117651425 117651721 -84676626 + AluSx SINE Alu 1 292 -20 467 253 141 21 chr4 117651721 117651884 -84676463 - LTR50 LTR ERVL -66 729 526 * 1052 235 190 6 chr4 117651881 117652234 -84676113 - LTR50 LTR ERVL -377 418 1 214 336 75 9 chr4 117652732 117652839 -84675508 + MIR3 SINE MIR 83 196 -12 608 196 51 0 chr4 117653267 117653405 -84674942 + L1MA8 LINE L1 6145 6289 -2 238 237 0 0 chr4 117653422 117653481 -84674866 + L1M4 LINE L1 4496 4554 -1592 2114 128 0 0 chr4 117656007 117656296 -84672051 - AluSx SINE Alu -22 290 2 2290 107 0 10 chr4 117656556 117656865 -84671482 + AluSq SINE Alu 1 306 -7 22 0 0 0 chr4 117658907 117658929 -84669418 + AT_rich Low_complexity Low_complexity 1 22 0 252 255 11 33 chr4 117659207 117659298 -84669049 - MIR SINE MIR -63 145 83 1621 117 43 18 chr4 117659557 117659838 -84668509 + L1MA4 LINE L1 6013 6300 0 227 255 0 0 chr4 117660094 117660141 -84668206 + (TG)n Simple_repeat Simple_repeat 2 48 0 588 65 0 0 chr4 117660482 117660559 -84667788 + (TATG)n Simple_repeat Simple_repeat 2 78 0 2086 115 4 0 chr4 117660567 117660845 -84667502 - AluSx SINE Alu -32 280 2 252 0 0 0 chr4 117661583 117661611 -84666736 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 228 135 0 0 chr4 117661633 117661670 -84666677 + (GGAGA)n Simple_repeat Simple_repeat 5 41 0 205 356 169 22 chr4 117662087 117662312 -84666035 - L2 LINE L2 -461 2853 2596 1984 149 6 16 chr4 117662319 117662634 -84665713 + AluSx SINE Alu 1 312 0 38 39 0 0 chr4 117662734 117662786 -84665561 + AT_rich Low_complexity Low_complexity 1 52 0 571 265 73 5 chr4 117662899 117663118 -84665229 - L2 LINE L2 -907 2407 2174 244 280 19 19 chr4 117663256 117663270 -84665077 - L1MA10 LINE L1 -4 6330 6317 1273 245 42 18 chr4 117663270 117663654 -84664693 - L1ME2 LINE L1 -10 6154 5762 293 250 53 26 chr4 117663640 117663792 -84664555 - L1ME2 LINE L1 -1674 4472 4317 * 2988 174 39 75 chr4 117663801 117663945 -84664402 - L1MB8 LINE L1 -9 6169 6021 2361 106 0 0 chr4 117663945 117664256 -84664091 + AluSq SINE Alu 1 311 -2 2988 174 39 75 chr4 117664256 117664829 -84663518 - L1MB8 LINE L1 -157 6021 5478 887 135 8 0 chr4 117664829 117664955 -84663392 - FLAM_C SINE Alu -16 127 1 2696 80 61 17 chr4 117665067 117665321 -84663026 + MER51B LTR ERV1 1 277 -100 2384 88 0 7 chr4 117665321 117665626 -84662721 - AluSg SINE Alu -7 303 1 2696 80 61 17 chr4 117665626 117665732 -84662615 + MER51B LTR ERV1 277 377 0 232 266 38 25 chr4 117665917 117665996 -84662351 + MLT2E LTR ERVL 545 624 -4 692 271 92 8 chr4 117666222 117666630 -84661717 - LTR16B LTR ERVL 0 464 1 261 300 25 0 chr4 117666687 117666767 -84661580 + MIR3 SINE MIR 113 194 -14 2204 94 14 3 chr4 117666784 117667081 -84661266 - AluSq SINE Alu -13 300 1 220 234 0 0 chr4 117667170 117667217 -84661130 + (TAA)n Simple_repeat Simple_repeat 3 49 0 236 329 0 36 chr4 117667273 117667410 -84660937 - HAL1 LINE L1 -84 2423 2292 37 0 0 0 chr4 117668022 117668059 -84660288 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 117668190 117668212 -84660135 + AT_rich Low_complexity Low_complexity 1 22 0 416 71 0 0 chr4 117668227 117668283 -84660064 - MER41A LTR ERV1 -98 456 401 733 204 157 0 chr4 117669097 117669288 -84659059 + MER33 DNA MER1_type 4 224 -100 1425 189 4 8 chr4 117669300 117669554 -84658793 - AluJb SINE Alu -16 296 44 25 65 0 0 chr4 117670438 117670484 -84657863 + AT_rich Low_complexity Low_complexity 1 46 0 304 151 47 47 chr4 117670576 117670662 -84657685 + L1MA6 LINE L1 6210 6295 -5 220 302 102 88 chr4 117670668 117671032 -84657315 - L2 LINE L2 -31 3241 2873 1271 188 0 0 chr4 117671129 117671347 -84657000 + AluJo SINE Alu 3 220 -92 1862 127 0 0 chr4 117671347 117671607 -84656740 + AluSx SINE Alu 40 299 -13 713 281 36 20 chr4 117671878 117672127 -84656220 + MIR SINE MIR 10 262 0 570 268 134 65 chr4 117672364 117672787 -84655560 - MLT1J LTR MaLR 0 511 50 2821 135 46 0 chr4 117672787 117673202 -84655145 - MER57B LTR ERV1 0 434 1 570 268 134 65 chr4 117673202 117673256 -84655091 - MLT1J LTR MaLR -461 50 1 683 256 243 30 chr4 117673472 117673773 -84654574 + L2 LINE L2 2352 2716 -598 416 235 59 20 chr4 117673776 117673929 -84654418 + L1MC5 LINE L1 7705 7863 -98 183 222 0 0 chr4 117674041 117674077 -84654270 - L2 LINE L2 -6 3307 3272 286 257 68 54 chr4 117674115 117674172 -84654175 + L2 LINE L2 3006 3061 -252 822 170 0 75 chr4 117674172 117674219 -84654128 - L1MB5 LINE L1 0 6174 6125 1908 137 0 39 chr4 117674219 117674525 -84653822 + AluJo SINE Alu 1 294 -18 822 170 0 75 chr4 117674525 117674665 -84653682 - L1MB5 LINE L1 -49 6125 6001 286 257 68 54 chr4 117674665 117674737 -84653610 + L2 LINE L2 3061 3140 -173 2733 154 21 21 chr4 117674737 117675204 -84653143 - MLT1C LTR MaLR 0 467 1 286 257 68 54 chr4 117675204 117675221 -84653126 + L2 LINE L2 3140 3155 -158 2213 121 0 0 chr4 117675235 117675533 -84652814 - AluSx SINE Alu -14 298 1 497 274 0 0 chr4 117675657 117675781 -84652566 + L2 LINE L2 3190 3313 0 41 72 0 0 chr4 117676061 117676144 -84652203 + AT_rich Low_complexity Low_complexity 1 83 0 1428 208 27 14 chr4 117676200 117676494 -84651853 + AluJo SINE Alu 1 298 -14 413 188 0 10 chr4 117676830 117676926 -84651421 + GA-rich Low_complexity Low_complexity 2 96 0 1504 196 31 3 chr4 117676974 117677260 -84651087 + AluJo SINE Alu 1 294 -18 2522 66 0 0 chr4 117677264 117677568 -84650779 + AluY SINE Alu 1 304 -7 1983 100 0 0 chr4 117677837 117678088 -84650259 + AluSx SINE Alu 8 258 -54 1516 272 58 69 chr4 117678201 117678801 -84649546 - L2 LINE L2 0 3313 2708 2221 126 0 0 chr4 117678801 117679103 -84649244 - AluSx SINE Alu -10 302 1 1516 272 58 69 chr4 117679103 117679464 -84648883 - L2 LINE L2 -605 2708 2359 2311 78 0 4 chr4 117679464 117679793 -84648554 + AluSg SINE Alu 1 328 0 1516 272 58 69 chr4 117679793 117679929 -84648418 - L2 LINE L2 -954 2359 2223 4778 126 12 14 chr4 117680465 117681193 -84647154 - L1MA8 LINE L1 -10 6281 5555 205 229 104 0 chr4 117681633 117681681 -84646666 - L2 LINE L2 -6 3307 3255 272 239 0 30 chr4 117681736 117681803 -84646544 - HsTC2 DNA Tc2 -613 1285 1221 * 538 177 24 32 chr4 117681786 117681910 -84646437 - HsTC2 DNA Tc2 -1772 126 4 317 243 0 0 chr4 117681912 117681982 -84646365 - MIR SINE MIR -2 260 191 2843 217 119 14 chr4 117683044 117683755 -84644592 - L1MD2 LINE L1 -24 6335 5550 491 0 0 17 chr4 117683781 117683841 -84644506 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 44295 46 3 0 chr4 117683841 117689959 -84638388 - L1PA4 LINE L1 -17 6138 2 314 290 148 19 chr4 117690449 117690604 -84637743 + L2 LINE L2 2952 3126 -187 1982 167 7 19 chr4 117690607 117690641 -84637706 - LTR43 LTR ERV1 0 602 569 2380 136 123 5 chr4 117690641 117691024 -84637323 + MSTA LTR MaLR 1 428 0 9763 140 22 40 chr4 117691026 117692633 -84635714 + MSTA-int LTR MaLR 3 1580 0 2059 121 131 72 chr4 117692633 117692995 -84635352 + MSTA LTR MaLR 1 391 -37 2383 97 7 0 chr4 117692995 117693305 -84635042 - AluSp SINE Alu -1 312 1 2059 121 131 72 chr4 117693305 117693346 -84635001 + MSTA LTR MaLR 391 428 0 1982 167 7 19 chr4 117693346 117693853 -84634494 - LTR43 LTR ERV1 -32 570 1 596 271 62 11 chr4 117693855 117694032 -84634315 + L2 LINE L2 3128 3313 0 213 377 57 25 chr4 117694061 117694220 -84634127 + L2 LINE L2 2630 2793 -521 189 0 0 0 chr4 117694415 117694436 -84633911 + (TTG)n Simple_repeat Simple_repeat 2 22 0 380 83 37 46 chr4 117695535 117695643 -84632704 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 2070 122 14 0 chr4 117696096 117696403 -84631944 + AluSx SINE Alu 1 311 0 560 321 27 16 chr4 117696521 117696969 -84631378 + L1MC/D LINE L1 4392 4846 -1300 1956 115 28 11 chr4 117697124 117697411 -84630936 + AluSx SINE Alu 1 292 -20 1961 149 42 20 chr4 117697424 117697780 -84630567 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr4 117697913 117697934 -84630413 + AT_rich Low_complexity Low_complexity 1 21 0 537 268 138 30 chr4 117698048 117698489 -84629858 + L1MC/D LINE L1 5254 5742 -2066 4551 219 71 42 chr4 117699153 117701546 -84626801 - L1MB7 LINE L1 -19 6165 3705 2979 124 14 35 chr4 117702266 117702759 -84625588 - L1PA16 LINE L1 -9 6157 5675 2329 72 0 3 chr4 117702772 117703342 -84625005 - L1PA3 LINE L1 -2 6153 5402 441 267 36 58 chr4 117704067 117704292 -84624055 + L1MC5 LINE L1 7499 7718 -243 747 202 10 185 chr4 117704830 117705117 -84623230 + LTR28 LTR ERV1 1 894 -861 822 245 24 122 chr4 117705133 117705554 -84622793 + MER52A LTR ERV1 346 1451 -23 525 289 26 0 chr4 117705575 117705731 -84622616 + MER52A LTR ERV1 1596 1755 0 196 339 104 43 chr4 117706209 117706651 -84621696 - L2 LINE L2 -964 2350 1882 181 234 106 0 chr4 117707065 117707112 -84621235 - MIR SINE MIR -100 108 57 198 209 0 0 chr4 117707197 117707240 -84621107 + CT-rich Low_complexity Low_complexity 3 45 0 1189 224 87 8 chr4 117707257 117707636 -84620711 - L1MB7 LINE L1 -14 6170 5762 188 277 40 69 chr4 117708038 117708139 -84620208 - MIR SINE MIR -62 200 103 399 21 0 0 chr4 117708242 117708290 -84620057 + (TG)n Simple_repeat Simple_repeat 2 49 0 834 203 6 0 chr4 117708301 117708459 -84619888 - MER45A DNA AcHobo -19 159 1 251 406 35 15 chr4 117708648 117708850 -84619497 - L2 LINE L2 -559 2755 2550 313 290 60 27 chr4 117708911 117709094 -84619253 - L1MEc LINE L1 -6138 258 70 321 68 0 0 chr4 117709276 117709320 -84619027 + (TC)n Simple_repeat Simple_repeat 2 45 0 264 59 0 0 chr4 117709320 117709354 -84618993 + (CA)n Simple_repeat Simple_repeat 1 34 0 210 323 16 0 chr4 117710730 117710792 -84617555 - L2 LINE L2 -8 3305 3243 289 85 0 43 chr4 117710943 117710990 -84617357 - MLT2D LTR ERVL -1 463 419 1814 218 3 5 chr4 117711052 117711432 -84616915 - MLT2D LTR ERVL -35 379 1 245 214 57 29 chr4 117711455 117711525 -84616822 - MIR SINE MIR 0 262 191 216 0 0 0 chr4 117711526 117711550 -84616797 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3998 120 57 0 chr4 117711556 117712187 -84616160 - L1PA14 LINE L1 -1 6160 5494 555 197 251 6 chr4 117712404 117712587 -84615760 - MIR SINE MIR -33 229 2 183 278 0 74 chr4 117712928 117712982 -84615365 - L2 LINE L2 0 3272 3223 1380 156 12 35 chr4 117713010 117713327 -84615020 + AluJb SINE Alu 33 343 0 435 189 118 8 chr4 117713380 117713507 -84614840 - LTR33A LTR ERVL -2 521 381 225 288 15 0 chr4 117713508 117713574 -84614773 - LTR50 LTR ERVL -223 572 506 1801 177 10 0 chr4 117713774 117714073 -84614274 + AluJb SINE Alu 1 302 -10 267 100 60 0 chr4 117714121 117714171 -84614176 - LTR50 LTR ERVL -742 53 1 21 0 0 0 chr4 117714225 117714246 -84614101 + AT_rich Low_complexity Low_complexity 1 21 0 244 226 0 0 chr4 117714575 117714628 -84613719 - AluSp SINE Alu -164 139 87 5658 130 62 12 chr4 117714628 117715631 -84612716 - Ricksha_a DNA DNA -128 1053 1 600 226 25 63 chr4 117716807 117716966 -84611381 - L2 LINE L2 0 3313 3161 1470 234 113 68 chr4 117717758 117718526 -84609821 + LTR1B LTR ERV1 1 994 -26 284 194 75 15 chr4 117718618 117718685 -84609662 - AluJ/FLAM SINE Alu -231 71 1 301 193 24 72 chr4 117718746 117718828 -84609519 + Tigger5 DNA MER2_type 1 78 -2245 311 214 0 14 chr4 117718828 117718898 -84609449 - Tigger5 DNA MER2_type -3 2320 2252 * 460 151 0 0 chr4 117718893 117718966 -84609381 + Tigger5 DNA MER2_type 2251 2323 0 690 215 123 28 chr4 117719006 117719257 -84609090 + ORSL DNA AcHobo 1 275 0 1330 168 4 26 chr4 117719258 117719484 -84608863 + AluJo SINE Alu 75 295 -17 1926 273 88 50 chr4 117719485 117720381 -84607966 - L2 LINE L2 -222 3091 2161 515 232 86 45 chr4 117721814 117722012 -84606335 - MIR SINE MIR -40 222 17 272 323 73 0 chr4 117722166 117722262 -84606085 + L2 LINE L2 3170 3272 0 1080 152 0 6 chr4 117722479 117722643 -84605704 - AluJo SINE Alu -14 298 136 1096 142 86 0 chr4 117723325 117723522 -84604825 + MER20 DNA MER1_type 2 215 -4 598 324 56 0 chr4 117723687 117723903 -84604444 - MIR SINE MIR -15 247 20 2081 134 3 7 chr4 117724737 117725042 -84603305 - AluSq SINE Alu -9 304 1 268 291 122 21 chr4 117725195 117725384 -84602963 + L1ME3A LINE L1 5961 6168 -2 28 29 0 0 chr4 117725428 117725463 -84602884 + AT_rich Low_complexity Low_complexity 1 35 0 447 259 103 56 chr4 117725737 117726085 -84602262 - L1MC4a LINE L1 -158 5963 5600 301 135 0 19 chr4 117726286 117726338 -84602009 - Alu SINE Alu -7 295 245 553 212 14 62 chr4 117726338 117726484 -84601863 - AluJo SINE Alu -173 139 1 223 286 77 0 chr4 117726684 117726775 -84601572 - L2 LINE L2 -1084 2230 2133 23 0 0 0 chr4 117727525 117727548 -84600799 + AT_rich Low_complexity Low_complexity 1 23 0 246 285 69 15 chr4 117727668 117727798 -84600549 - MIR SINE MIR -6 256 120 187 364 0 0 chr4 117727905 117727971 -84600376 - L3 LINE CR1 -548 1029 964 410 258 61 32 chr4 117728293 117728621 -84599726 - L1MC4a LINE L1 -743 5403 5127 408 340 64 54 chr4 117728720 117729316 -84599031 + L2 LINE L2 2592 3270 -2 481 318 10 46 chr4 117729333 117729528 -84598819 + MER5A DNA MER1_type 1 188 -1 319 289 25 8 chr4 117729621 117729742 -84598605 + L1MC4a LINE L1 5764 5886 -1922 2378 58 10 7 chr4 117729927 117730222 -84598125 - AluY SINE Alu -15 296 1 474 174 61 61 chr4 117730495 117730627 -84597720 - FLAM_A SINE Alu -1 132 1 909 177 261 7 chr4 117730634 117730917 -84597430 - L1MB5 LINE L1 -38 6136 5782 361 260 117 71 chr4 117730920 117731116 -84597231 + MIR SINE MIR 47 251 -11 9001 96 22 6 chr4 117731780 117733043 -84595304 + HSMAR1 DNA Mariner 2 1285 -2 22 0 0 0 chr4 117733175 117733197 -84595150 + AT_rich Low_complexity Low_complexity 1 22 0 186 18 36 73 chr4 117733203 117733258 -84595089 + (TTAAA)n Simple_repeat Simple_repeat 4 56 0 931 258 42 4 chr4 117734003 117734243 -84594104 - MIR SINE MIR -11 251 3 575 236 23 40 chr4 117734277 117734451 -84593896 - L2 LINE L2 -1 3312 3142 1849 176 20 6 chr4 117734451 117734792 -84593555 - MLT1A1 LTR MaLR -1 364 19 1154 265 104 8 chr4 117734806 117735315 -84593032 - L2 LINE L2 -166 3147 2577 2409 60 0 7 chr4 117735390 117735688 -84592659 + AluY SINE Alu 3 298 -13 295 311 65 1 chr4 117735688 117735804 -84592543 - MIR SINE MIR -80 128 10 2211 131 0 0 chr4 117737166 117737478 -84590869 + AluJb SINE Alu 1 312 0 205 286 36 0 chr4 117737493 117737549 -84590798 + L2 LINE L2 2373 2430 -884 * 247 254 16 0 chr4 117737535 117737598 -84590749 + L2 LINE L2 3022 3085 -228 1472 252 74 57 chr4 117737603 117737861 -84590486 - L2 LINE L2 -826 2488 2236 1916 148 3 25 chr4 117737861 117738179 -84590168 - AluSx SINE Alu -1 311 1 1472 252 74 57 chr4 117738179 117738500 -84589847 - L2 LINE L2 -1078 2236 1899 537 215 10 75 chr4 117738500 117738734 -84589613 + L1MC4a LINE L1 3757 3974 -2172 559 191 46 162 chr4 117738791 117739032 -84589315 - MER58C DNA MER1_type -1 214 2 456 306 117 4 chr4 117739292 117739540 -84588807 + MLT1L LTR MaLR 335 610 -5 33 85 0 0 chr4 117739797 117739879 -84588468 + AT_rich Low_complexity Low_complexity 1 82 0 1832 133 29 60 chr4 117739924 117740240 -84588107 - AluSx SINE Alu -6 306 1 483 319 89 44 chr4 117740382 117740878 -84587469 + L1MC4a LINE L1 4593 5110 -1036 10713 206 36 21 chr4 117740887 117743310 -84585037 + L1PA13 LINE L1 1 2499 -4298 2318 115 0 13 chr4 117743310 117743624 -84584723 - AluSg SINE Alu 0 310 1 10713 206 36 21 chr4 117743624 117745061 -84583286 + L1PA13 LINE L1 2499 3913 -2884 1620 162 29 41 chr4 117745053 117745393 -84582954 + L1P LINE L1 4870 5205 -941 * 4930 133 27 8 chr4 117745385 117746340 -84582007 + L1PA13 LINE L1 5077 6047 -116 302 319 69 43 chr4 117746399 117746587 -84581760 + L1MC4a LINE L1 5528 5720 -401 251 295 60 35 chr4 117746595 117746795 -84581552 + L1MC4a LINE L1 5710 5914 -1894 25 0 0 0 chr4 117747203 117747228 -84581119 + AT_rich Low_complexity Low_complexity 1 25 0 268 254 0 0 chr4 117747247 117747306 -84581041 - L2 LINE L2 0 3313 3255 447 267 59 75 chr4 117747323 117747746 -84580601 - L1MC4a LINE L1 -332 5789 5404 * 37249 44 1 1 chr4 117747728 117753036 -84575311 - L1PA5 LINE L1 0 6154 847 687 133 0 0 chr4 117753034 117753132 -84575215 - L1PA5 LINE L1 -6048 98 1 * 299 258 38 7 chr4 117753144 117753279 -84575068 - L1M1 LINE L1 -871 5431 5291 269 253 38 25 chr4 117753689 117753768 -84574579 - MLT1K LTR MaLR 0 588 509 336 78 20 0 chr4 117753991 117754042 -84574305 - MADE1 DNA Mariner 0 80 29 389 95 79 0 chr4 117754044 117754107 -84574240 - MADE1 DNA Mariner -12 68 1 245 308 110 20 chr4 117754467 117754613 -84573734 + MER117 DNA MER1_type 38 196 -1 456 323 49 76 chr4 117754883 117755719 -84572628 - L2 LINE L2 -20 3252 2448 1663 148 71 7 chr4 117755719 117756016 -84572331 + MER4D LTR ERV1 1 316 -556 3516 140 19 19 chr4 117756117 117756371 -84571976 + L1PA16 LINE L1 5575 5828 -338 2473 74 0 0 chr4 117756371 117756669 -84571678 + AluY SINE Alu 1 298 -13 3516 140 19 19 chr4 117756669 117756998 -84571349 + L1PA16 LINE L1 5827 6158 -8 24 0 0 0 chr4 117758053 117758077 -84570270 + AT_rich Low_complexity Low_complexity 1 24 0 32342 111 13 55 chr4 117758242 117764665 -84563682 + L1PA7 LINE L1 12 6154 0 780 202 12 128 chr4 117764777 117765034 -84563313 + MIR SINE MIR 6 232 -30 505 312 9 41 chr4 117765041 117765262 -84563085 - L1MC/D LINE L1 -2055 5753 5540 355 304 47 73 chr4 117765306 117765420 -84562927 - MER5A DNA MER1_type -3 186 77 2141 98 0 0 chr4 117765420 117765695 -84562652 - AluSg SINE Alu -22 288 14 355 304 47 73 chr4 117765695 117765771 -84562576 - MER5A DNA MER1_type -112 77 1 1625 118 0 0 chr4 117765952 117766172 -84562175 + AluSx SINE Alu 5 224 -88 2079 132 6 10 chr4 117767186 117767236 -84561111 - AluSx SINE Alu 0 333 284 180 97 0 0 chr4 117767236 117767267 -84561080 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2079 132 6 10 chr4 117767267 117767550 -84560797 - AluSx SINE Alu -49 284 1 16328 60 7 1 chr4 117767925 117770668 -84557679 - L1PA6 LINE L1 -1 6153 3383 442 224 61 0 chr4 117770668 117770766 -84557581 - MER67C LTR ERV1 -446 264 161 1170 157 5 0 chr4 117770766 117770957 -84557390 + AluSp SINE Alu 119 310 -3 1572 186 0 35 chr4 117771096 117771408 -84556939 - AluJo SINE Alu -11 301 1 431 127 0 0 chr4 117772146 117772209 -84556138 - AluS SINE Alu -246 64 2 2506 84 0 0 chr4 117772915 117773226 -84555121 + AluY SINE Alu 1 311 0 1953 67 47 8 chr4 117774601 117774855 -84553492 - AluY SINE Alu -9 302 39 1788 186 17 0 chr4 117775257 117775558 -84552789 + AluJo SINE Alu 1 306 -6 272 152 0 0 chr4 117775622 117775668 -84552679 + tRNA-Gln-CAG tRNA tRNA 1 46 -29 21 0 0 0 chr4 117775823 117775844 -84552503 + AT_rich Low_complexity Low_complexity 1 21 0 464 278 65 35 chr4 117775936 117776105 -84552242 - MIR SINE MIR -71 191 18 1429 165 49 133 chr4 117776913 117776967 -84551380 + MLT1C LTR MaLR 36 93 -374 2156 136 13 0 chr4 117776967 117777275 -84551072 + AluSx SINE Alu 1 312 0 1429 165 49 133 chr4 117777275 117777692 -84550655 + MLT1C LTR MaLR 93 467 0 1386 201 147 28 chr4 117777735 117778158 -84550189 + MLT1E2 LTR MaLR 146 618 -8 227 250 36 0 chr4 117778165 117778221 -84550126 - MIR SINE MIR -5 257 200 437 71 0 0 chr4 117779355 117779411 -84548936 - MER4A LTR ERV1 0 664 609 13589 49 75 4 chr4 117779418 117781169 -84547178 + L1PA2 LINE L1 4 1878 -4268 27500 26 0 0 chr4 117781169 117785014 -84543333 + L1PA2 LINE L1 2309 6155 0 4022 84 57 48 chr4 117785015 117785635 -84542712 - MER4A LTR ERV1 -39 625 1 2793 151 23 16 chr4 117786236 117786666 -84541681 + Tigger2a DNA MER2_type 2 434 0 319 304 58 7 chr4 117787390 117787528 -84540819 + MIR SINE MIR 64 208 -54 2318 97 3 0 chr4 117787598 117787906 -84540441 + AluSg SINE Alu 1 309 -1 1508 181 15 4 chr4 117788145 117788416 -84539931 + AluJo SINE Alu 37 310 -2 201 111 0 0 chr4 117788416 117788443 -84539904 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 897 100 0 0 chr4 117788443 117788573 -84539774 + (GGAAA)n Simple_repeat Simple_repeat 5 134 0 492 18 0 0 chr4 117788573 117788630 -84539717 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 2165 123 7 7 chr4 117789175 117789484 -84538863 + AluSc SINE Alu 1 309 0 639 39 0 0 chr4 117789487 117789565 -84538782 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 273 280 26 0 chr4 117790168 117790257 -84538090 + Charlie8 DNA MER1_type 186 276 -2141 2420 92 0 0 chr4 117791243 117791546 -84536801 + AluSp SINE Alu 1 303 -10 240 35 0 0 chr4 117791878 117791907 -84536440 + (GAA)n Simple_repeat Simple_repeat 2 30 0 193 182 91 18 chr4 117792426 117792481 -84535866 - MIR SINE MIR -78 184 126 266 337 54 0 chr4 117792934 117793026 -84535321 - MIR3 SINE MIR -5 203 107 180 0 0 0 chr4 117793515 117793535 -84534812 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2321 90 7 0 chr4 117793865 117794165 -84534182 + AluSq SINE Alu 1 302 -11 237 277 64 11 chr4 117794266 117794360 -84533987 + MLT1J LTR MaLR 409 507 -4 360 328 72 10 chr4 117794387 117794582 -84533765 - MIR SINE MIR 0 262 56 1672 181 5 102 chr4 117796208 117796650 -84531697 - MER4D LTR ERV1 0 903 505 4248 157 27 11 chr4 117796750 117797824 -84530523 - L1P4 LINE L1 -682 5484 4397 27 73 0 0 chr4 117797966 117798021 -84530326 + AT_rich Low_complexity Low_complexity 1 55 0 203 207 230 11 chr4 117798678 117798765 -84529582 + MIR SINE MIR 126 231 -31 228 274 9 53 chr4 117798883 117798996 -84529351 - LTR33A LTR ERVL -4 519 412 267 315 44 128 chr4 117799347 117799775 -84528572 - L2 LINE L2 -29 3243 2852 296 278 113 60 chr4 117799989 117800140 -84528207 - MIR SINE MIR -73 189 31 1152 160 18 36 chr4 117800952 117801003 -84527344 - L1PB4 LINE L1 0 6156 6106 3471 81 11 0 chr4 117801003 117801449 -84526898 - MLT2A2 LTR ERVL 0 453 3 1152 160 18 36 chr4 117801449 117801622 -84526725 - L1PB4 LINE L1 -50 6106 5936 624 249 11 116 chr4 117802046 117802170 -84526177 - MIR SINE MIR 0 262 181 2349 93 7 0 chr4 117802170 117802480 -84525867 - AluSp SINE Alu -1 312 1 624 249 11 116 chr4 117802480 117802632 -84525715 - MIR SINE MIR -81 181 15 2129 137 0 0 chr4 117802725 117803032 -84525315 + AluSx SINE Alu 1 307 -5 524 148 0 11 chr4 117803365 117803453 -84524894 + Tigger5 DNA MER2_type 2237 2323 0 23 33 0 0 chr4 117803453 117803483 -84524864 + AT_rich Low_complexity Low_complexity 1 30 0 394 413 15 0 chr4 117803509 117803715 -84524632 - MIR SINE MIR 0 262 54 288 368 41 18 chr4 117803804 117803975 -84524372 - MER5B DNA MER1_type -2 176 2 689 315 91 37 chr4 117805111 117805457 -84522890 + LTR33 LTR ERVL 22 401 -120 2135 132 109 47 chr4 117805457 117805631 -84522716 + MSTA LTR MaLR 1 163 -265 2254 93 0 0 chr4 117805631 117805938 -84522409 + AluSc SINE Alu 1 307 0 2135 132 109 47 chr4 117805938 117806163 -84522184 + MSTA LTR MaLR 163 428 0 689 315 91 37 chr4 117806163 117806280 -84522067 + LTR33 LTR ERVL 401 510 -11 750 164 24 108 chr4 117806633 117806706 -84521641 - MER65B LTR ERV1 -7 524 446 1891 93 0 0 chr4 117806706 117806942 -84521405 + AluSq SINE Alu 1 236 -77 750 164 24 108 chr4 117806942 117807118 -84521229 - MER65B LTR ERV1 -85 446 296 321 89 0 0 chr4 117807473 117807518 -84520829 + (CA)n Simple_repeat Simple_repeat 1 45 0 280 269 54 40 chr4 117807521 117807670 -84520677 - L1MC4 LINE L1 -130 7912 7762 1399 76 0 0 chr4 117807673 117807844 -84520503 + AluSp SINE Alu 135 305 -8 516 351 78 12 chr4 117807848 117808363 -84519984 - L1MC4 LINE L1 -277 7765 7217 844 179 20 13 chr4 117808394 117808545 -84519802 - FRAM SINE Alu -14 152 1 673 121 0 0 chr4 117808677 117808768 -84519579 + AluJ/FLAM SINE Alu 1 91 -221 281 45 0 23 chr4 117808772 117808816 -84519531 + (TC)n Simple_repeat Simple_repeat 2 44 0 193 319 0 69 chr4 117809029 117809145 -84519202 + L2 LINE L2 2982 3089 -183 2337 100 0 0 chr4 117809569 117809870 -84518477 - AluSq SINE Alu -12 301 1 183 325 60 24 chr4 117809905 117809988 -84518359 - MIR SINE MIR -135 127 42 337 302 58 53 chr4 117810046 117810235 -84518112 - MIR SINE MIR -16 192 3 345 310 0 0 chr4 117810332 117810432 -84517915 - MIR SINE MIR -6 256 157 1781 162 24 0 chr4 117810606 117810896 -84517451 - AluJb SINE Alu -15 297 1 2331 125 37 0 chr4 117810909 117811284 -84517063 + L1MC2 LINE L1 5947 6335 -9 2322 103 0 7 chr4 117811299 117811601 -84516746 + AluSq SINE Alu 1 300 -13 210 37 0 0 chr4 117812000 117812027 -84516320 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 2284 80 27 7 chr4 117812661 117812960 -84515387 - AluY SINE Alu -6 305 1 835 272 4 0 chr4 117812972 117813211 -84515136 - L1M4c LINE L1 -4837 1809 1570 2392 137 70 39 chr4 117813211 117813679 -84514668 - Tigger2 DNA MER2_type 0 2718 2236 325 242 65 24 chr4 117813688 117813812 -84514535 - L1M4c LINE L1 -6399 143 15 675 241 38 28 chr4 117813827 117814039 -84514308 - MLT1H LTR MaLR -335 214 1 368 134 15 0 chr4 117814315 117814382 -84513965 + L1MB1 LINE L1 6097 6164 -4 28 29 0 0 chr4 117815907 117815942 -84512405 + AT_rich Low_complexity Low_complexity 1 35 0 34 24 0 0 chr4 117817779 117817820 -84510527 + AT_rich Low_complexity Low_complexity 1 41 0 801 110 46 0 chr4 117817825 117817934 -84510413 - AluJb SINE Alu -194 118 5 1979 100 92 0 chr4 117819569 117819840 -84508507 + AluSg SINE Alu 1 296 -14 189 282 136 27 chr4 117820282 117820392 -84507955 + MIR SINE MIR 16 137 -71 525 278 178 23 chr4 117821062 117821590 -84506757 - L2 LINE L2 -1 3312 2679 2340 80 0 46 chr4 117822360 117822684 -84505663 + AluSg SINE Alu 1 309 -1 953 164 59 74 chr4 117823298 117823608 -84504739 + MER33 DNA MER1_type 1 296 -28 2854 3 0 3 chr4 117823625 117823936 -84504411 - AluYa5 SINE Alu -1 310 1 226 281 37 49 chr4 117824570 117824652 -84503695 - L2 LINE L2 -1 3312 3232 1853 158 0 0 chr4 117824857 117825162 -84503185 - AluSx SINE Alu 0 305 1 719 197 104 22 chr4 117825212 117825395 -84502952 - MER20 DNA MER1_type -4 215 18 1828 136 7 0 chr4 117825399 117825672 -84502675 - AluSq SINE Alu 0 313 39 1048 98 8 0 chr4 117825673 117825805 -84502542 - AluSq/x SINE Alu -180 133 1 693 305 62 9 chr4 117825931 117826299 -84502048 - MLT1J2 LTR MaLR -57 389 3 2087 146 0 0 chr4 117827977 117828279 -84500068 + AluSx SINE Alu 5 306 -6 380 271 6 66 chr4 117828426 117828592 -84499755 + MLT1J2 LTR MaLR 253 408 -42 752 286 139 50 chr4 117829226 117829687 -84498660 + MLT1L LTR MaLR 1 522 -93 1999 159 0 0 chr4 117829687 117829976 -84498371 - AluJb SINE Alu -23 289 1 752 286 139 50 chr4 117829976 117830073 -84498274 + MLT1L LTR MaLR 522 609 -6 240 247 99 0 chr4 117830879 117830960 -84497387 + L2 LINE L2 3221 3309 -4 1570 198 47 65 chr4 117830973 117831468 -84496879 - MLT1D LTR MaLR 0 505 20 198 103 0 0 chr4 117832435 117832464 -84495883 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2237 121 3 0 chr4 117832727 117833034 -84495313 - AluSx SINE Alu -4 308 1 23 0 0 0 chr4 117833036 117833059 -84495288 + AT_rich Low_complexity Low_complexity 1 23 0 195 173 0 67 chr4 117833109 117833184 -84495163 + CT-rich Low_complexity Low_complexity 1 70 0 1821 83 4 8 chr4 117833698 117833940 -84494407 - AluSx SINE Alu -17 295 55 2201 166 30 45 chr4 117834062 117834526 -84493821 + MSTB2 LTR MaLR 1 457 0 240 276 55 24 chr4 117836202 117836329 -84492018 - MER103 DNA DNA -9 157 27 2134 116 0 14 chr4 117836477 117836793 -84491554 - AluSx SINE Alu 0 312 1 477 255 10 0 chr4 117836799 117836897 -84491450 + MIR SINE MIR 26 124 -138 212 293 183 0 chr4 117839169 117839251 -84489096 + L2 LINE L2 3168 3264 -8 892 136 0 15 chr4 117840168 117840300 -84488047 - FLAM_C SINE Alu -13 130 1 485 286 5 25 chr4 117840324 117840527 -84487820 - L1ME LINE L1 -318 5803 5605 319 276 47 0 chr4 117840549 117840676 -84487671 - L1ME4a LINE L1 0 6121 5989 433 287 75 67 chr4 117840722 117841004 -84487343 - L1ME4a LINE L1 -206 5915 5632 233 247 24 0 chr4 117841018 117841103 -84487244 + (TATG)n Simple_repeat Simple_repeat 4 90 0 243 314 12 0 chr4 117841105 117841191 -84487156 - L1ME4a LINE L1 -2228 5580 5494 33 0 0 0 chr4 117841385 117841418 -84486929 + AT_rich Low_complexity Low_complexity 1 33 0 376 220 0 68 chr4 117842819 117842937 -84485410 - FLAM_A SINE Alu -3 130 21 509 299 133 28 chr4 117843721 117844082 -84484265 - L2 LINE L2 -686 2628 2230 2366 97 0 0 chr4 117844288 117844588 -84483759 + AluSx SINE Alu 1 300 -12 258 247 73 71 chr4 117845744 117845942 -84482405 - MIR SINE MIR -46 216 32 285 16 62 31 chr4 117846290 117846354 -84481993 + (TTATA)n Simple_repeat Simple_repeat 4 69 0 2378 238 105 43 chr4 117846857 117847832 -84480515 - L1MC4 LINE L1 -2 8040 6886 690 318 79 15 chr4 117847869 117848264 -84480083 + L2 LINE L2 2764 3184 -129 3326 152 19 74 chr4 117848300 117849031 -84479316 - LTR8 LTR ERV1 0 691 1 200 292 0 0 chr4 117849058 117849106 -84479241 + (TG)n Simple_repeat Simple_repeat 1 48 0 238 114 0 0 chr4 117849826 117849861 -84478486 + MADE1 DNA Mariner 1 35 -45 186 43 0 0 chr4 117850074 117850097 -84478250 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2587 75 3 3 chr4 117850787 117851158 -84477189 + L1PA7 LINE L1 5809 6154 0 2338 103 0 0 chr4 117853272 117853582 -84474765 - AluSx SINE Alu -2 310 1 382 312 32 39 chr4 117853719 117853873 -84474474 - MIR SINE MIR -57 205 53 284 275 0 18 chr4 117855331 117855440 -84472907 + HAL1 LINE L1 801 907 -1600 2265 91 0 0 chr4 117856918 117857239 -84471108 + AluSx SINE Alu 1 321 0 2841 167 41 12 chr4 117857830 117858392 -84469955 - L1MD3 LINE L1 -8 7987 7410 616 221 8 0 chr4 117858400 117858522 -84469825 - MLT1F1 LTR MaLR -444 123 1 568 270 20 7 chr4 117858523 117858675 -84469672 - L1MD3 LINE L1 -718 7277 7124 21 36 0 0 chr4 117858769 117858797 -84469550 + AT_rich Low_complexity Low_complexity 1 28 0 36 40 0 0 chr4 117858892 117858942 -84469405 + AT_rich Low_complexity Low_complexity 1 50 0 191 314 0 0 chr4 117859572 117859623 -84468724 - L2 LINE L2 -17 3296 3246 235 222 26 170 chr4 117859910 117860063 -84468284 + MER94 DNA DNA 1 131 -3 327 304 0 0 chr4 117860755 117860834 -84467513 - MIR SINE MIR -71 191 113 183 308 115 13 chr4 117860903 117860981 -84467366 + MIR3 SINE MIR 109 194 -14 816 239 120 17 chr4 117860986 117861287 -84467060 - MER46C DNA MER2_type -1 337 6 207 356 0 0 chr4 117861348 117861449 -84466898 + MIR SINE MIR 147 247 -15 5387 132 28 7 chr4 117862758 117864375 -84463972 - L1PA15 LINE L1 -3 6162 4526 2758 36 0 3 chr4 117864384 117864715 -84463632 - L1PA5 LINE L1 0 6154 5825 5348 218 11 42 chr4 117864720 117866027 -84462320 - L1PA12 LINE L1 -4708 2873 1607 228 100 0 0 chr4 117867677 117867717 -84460630 + (CAGAGA)n Simple_repeat Simple_repeat 2 41 0 205 269 0 0 chr4 117867725 117867777 -84460570 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 372 306 112 41 chr4 117867807 117868049 -84460298 - MIR SINE MIR 0 262 4 21 36 0 0 chr4 117868247 117868275 -84460072 + AT_rich Low_complexity Low_complexity 1 28 0 455 171 0 0 chr4 117868369 117868445 -84459902 - AluJ/FLAM SINE Alu -236 76 1 1864 134 33 0 chr4 117869174 117869449 -84458898 + AluJb SINE Alu 1 284 -28 21 0 0 0 chr4 117869463 117869484 -84458863 + AT_rich Low_complexity Low_complexity 1 21 0 2405 71 0 0 chr4 117870010 117870307 -84458040 + AluY SINE Alu 1 297 -14 241 293 46 126 chr4 117872231 117872405 -84455942 + MIR SINE MIR 14 173 -89 1018 209 24 9 chr4 117872751 117872961 -84455386 - MER20 DNA MER1_type -5 214 2 250 73 18 55 chr4 117873209 117873242 -84455105 + (TTCA)n Simple_repeat Simple_repeat 1 33 -20 2244 113 0 0 chr4 117873242 117873544 -84454803 - AluSx SINE Alu -10 302 1 250 73 18 55 chr4 117873544 117873565 -84454782 + (TTCA)n Simple_repeat Simple_repeat 33 53 0 211 354 13 0 chr4 117873711 117873790 -84454557 - MIR SINE MIR -62 146 67 338 375 97 0 chr4 117874156 117874367 -84453980 - MIR SINE MIR -18 244 5 284 325 95 8 chr4 117874524 117874650 -84453697 - MIR SINE MIR -70 192 56 23 0 0 0 chr4 117875783 117875806 -84452541 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr4 117876432 117876475 -84451872 + AT_rich Low_complexity Low_complexity 1 43 0 1462 206 80 9 chr4 117877178 117877365 -84450982 - MLT1A2 LTR MaLR 0 374 202 231 36 0 0 chr4 117877365 117877393 -84450954 + (GA)n Simple_repeat Simple_repeat 2 29 0 1462 206 80 9 chr4 117877393 117877554 -84450793 - MLT1A2 LTR MaLR -172 202 1 227 212 98 114 chr4 117878403 117878418 -84449929 + L2 LINE L2 3143 3157 -115 2058 104 14 0 chr4 117878418 117878720 -84449627 - AluSx SINE Alu 0 306 1 227 212 98 114 chr4 117878720 117878835 -84449512 + L2 LINE L2 3157 3272 0 321 231 8 142 chr4 117880173 117880307 -84448040 + MIR3 SINE MIR 87 202 -6 24 0 0 0 chr4 117880419 117880443 -84447904 + AT_rich Low_complexity Low_complexity 1 24 0 234 91 0 0 chr4 117881098 117881131 -84447216 + (CCA)n Simple_repeat Simple_repeat 1 33 0 1028 212 104 21 chr4 117881168 117881409 -84446938 + MER58 DNA MER1_type 1 261 -80 360 330 60 28 chr4 117882003 117882185 -84446162 + HAL1 LINE L1 1 188 -2319 962 200 0 56 chr4 117882650 117882887 -84445460 + AluJo SINE Alu 86 310 0 612 235 139 106 chr4 117883119 117883349 -84444998 + HAL1 LINE L1 984 1205 -1302 2188 130 3 0 chr4 117883349 117883656 -84444691 - AluSx SINE Alu -2 310 3 612 235 139 106 chr4 117883656 117883667 -84444680 + HAL1 LINE L1 1205 1214 -1293 1868 167 0 3 chr4 117883667 117883961 -84444386 - AluSc SINE Alu -16 293 1 612 235 139 106 chr4 117883961 117884547 -84443800 + HAL1 LINE L1 1214 1839 -668 837 163 52 17 chr4 117884726 117884898 -84443449 + THE1C LTR MaLR 143 320 -55 231 200 38 67 chr4 117885149 117885254 -84443093 + HAL1b LINE L1 748 849 -499 411 207 139 74 chr4 117885254 117885436 -84442911 - MER63 DNA MER1_type -55 781 1 37 0 0 0 chr4 117885543 117885580 -84442767 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr4 117886023 117886051 -84442296 + AT_rich Low_complexity Low_complexity 1 28 0 1609 170 43 18 chr4 117886247 117886524 -84441823 - AluJo SINE Alu -20 292 9 2259 111 0 0 chr4 117887475 117887773 -84440574 + AluSx SINE Alu 1 298 -14 426 232 37 21 chr4 117887837 117888003 -84440344 - MIR SINE MIR -9 253 34 408 275 92 80 chr4 117888014 117888341 -84440006 - L2 LINE L2 -440 2874 2544 789 291 89 51 chr4 117890849 117891274 -84437073 - LTR16C LTR ERVL -2 489 43 2343 98 0 7 chr4 117891274 117891581 -84436766 + AluSq SINE Alu 1 305 -8 789 291 89 51 chr4 117891581 117891626 -84436721 - LTR16C LTR ERVL -448 43 1 25 75 0 0 chr4 117892626 117892679 -84435668 + AT_rich Low_complexity Low_complexity 1 53 0 198 0 0 0 chr4 117893042 117893064 -84435283 + (TTCC)n Simple_repeat Simple_repeat 3 24 0 22 0 0 0 chr4 117893519 117893541 -84434806 + AT_rich Low_complexity Low_complexity 1 22 0 2386 168 68 8 chr4 117893602 117894084 -84434263 - L1MB8 LINE L1 -6 6172 5662 205 231 0 0 chr4 117895332 117895371 -84432976 + L2 LINE L2 3234 3272 0 2192 117 0 3 chr4 117895983 117896291 -84432056 - AluSq SINE Alu -6 307 1 1082 70 7 14 chr4 117897187 117897329 -84431018 + AluSp SINE Alu 1 141 -172 706 127 56 8 chr4 117897332 117897458 -84430889 + Tigger1 DNA MER2_type 2133 2264 -154 1263 76 0 0 chr4 117897461 117897618 -84430729 + AluSp/q SINE Alu 156 312 -1 1062 265 146 32 chr4 117897684 117898088 -84430259 - MLT1J2 LTR MaLR 0 450 1 15022 122 25 22 chr4 117898327 117900737 -84427610 - Tigger1 DNA MER2_type 0 2418 1 736 129 22 65 chr4 117901032 117901171 -84427176 - FLAM_C SINE Alu -10 133 1 27 0 0 0 chr4 117901345 117901372 -84426975 + AT_rich Low_complexity Low_complexity 1 27 0 357 285 137 11 chr4 117901630 117901907 -84426440 + L1ME4a LINE L1 5810 6121 0 268 244 23 70 chr4 117902039 117902125 -84426222 + MIR SINE MIR 79 160 -102 740 238 49 11 chr4 117902310 117902495 -84425852 - MIR SINE MIR -51 211 20 466 359 147 17 chr4 117902743 117903219 -84425128 + L2 LINE L2 2311 2848 -466 220 207 207 0 chr4 117905158 117905216 -84423131 - L2 LINE L2 -3 3269 3200 252 416 40 7 chr4 117905283 117905432 -84422915 + L2 LINE L2 3026 3179 -93 526 276 77 56 chr4 117905611 117905807 -84422540 + MIR SINE MIR 50 249 -13 284 194 14 69 chr4 117905989 117906061 -84422286 - L2 LINE L2 0 3313 3246 484 268 55 0 chr4 117908892 117909019 -84419328 - LTR16A1 LTR ERVL -1 456 323 225 0 0 0 chr4 117909621 117909646 -84418701 + (T)n Simple_repeat Simple_repeat 1 25 0 404 269 96 42 chr4 117910296 117910463 -84417884 + MIR SINE MIR 37 212 -50 575 230 75 6 chr4 117911487 117911661 -84416686 - MLT1L LTR MaLR -17 598 413 261 386 51 38 chr4 117912154 117912312 -84416035 - L2 LINE L2 -1 3271 3112 683 305 57 64 chr4 117912312 117912453 -84415894 + ERVL LTR ERVL 2592 2733 -3031 952 103 0 22 chr4 117912453 117912589 -84415758 + FLAM_C SINE Alu 1 133 0 683 305 57 64 chr4 117912589 117912854 -84415493 + ERVL LTR ERVL 2733 2995 -2769 351 273 136 13 chr4 117913080 117913234 -84415113 + MIR SINE MIR 90 262 0 401 191 21 0 chr4 117913256 117913350 -84414997 - L1MB3 LINE L1 0 6183 6088 950 201 198 51 chr4 117913633 117914006 -84414341 + MSTC LTR MaLR 1 428 0 1864 177 24 32 chr4 117915384 117915762 -84412585 - THE1C LTR MaLR 0 375 1 780 247 143 66 chr4 117915969 117916202 -84412145 - L2 LINE L2 0 3313 3099 1176 167 18 31 chr4 117916202 117916424 -84411923 - MER20 DNA MER1_type 0 219 1 780 247 143 66 chr4 117916424 117916697 -84411650 - L2 LINE L2 -214 3099 2773 653 247 43 51 chr4 117916858 117917093 -84411254 - L2 LINE L2 -1 3312 3080 207 0 0 0 chr4 117918788 117918811 -84409536 + (A)n Simple_repeat Simple_repeat 1 23 0 337 256 90 15 chr4 117920990 117921123 -84407224 - MLT1H LTR MaLR -375 174 32 228 279 62 70 chr4 117921190 117921319 -84407028 - MIR SINE MIR -56 152 25 3241 76 9 5 chr4 117921808 117922326 -84406021 + L1P3 LINE L1 4915 5432 -740 465 165 124 113 chr4 117923145 117923555 -84404792 - MLT1C LTR MaLR 0 467 129 228 35 0 0 chr4 117923598 117923627 -84404720 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 228 310 0 17 chr4 117924712 117924770 -84403577 + L2 LINE L2 3213 3269 -3 21 57 0 0 chr4 117925031 117925066 -84403281 + AT_rich Low_complexity Low_complexity 1 35 0 2096 124 7 16 chr4 117925353 117925490 -84402857 + AluSx SINE Alu 1 138 -174 4797 46 0 2 chr4 117925490 117926062 -84402285 + L1PA5 LINE L1 5568 6140 -14 291 85 0 0 chr4 117926062 117926109 -84402238 + (TA)n Simple_repeat Simple_repeat 2 48 0 4797 46 0 2 chr4 117926109 117926121 -84402226 + L1PA5 LINE L1 6140 6151 -3 2096 124 7 16 chr4 117926121 117926289 -84402058 + AluSx SINE Alu 138 303 -9 239 93 23 0 chr4 117926589 117926632 -84401715 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 2299 91 14 0 chr4 117926926 117927222 -84401125 - AluSp SINE Alu -11 302 3 684 259 47 31 chr4 117927309 117927502 -84400845 - MIR SINE MIR -14 248 53 229 222 22 44 chr4 117927865 117927955 -84400392 + L1MC4 LINE L1 6619 6706 -1336 224 151 57 38 chr4 117928060 117928113 -84400234 + L2 LINE L2 3008 3061 -252 576 231 78 52 chr4 117928179 117928447 -84399900 - L1MC4 LINE L1 -461 7581 7307 1197 193 78 12 chr4 117928500 117928744 -84399603 + MLT1F1 LTR MaLR 308 567 0 303 265 79 63 chr4 117929430 117929619 -84398728 + MLT1K LTR MaLR 391 582 -6 194 265 0 20 chr4 117929858 117929907 -84398440 - L2 LINE L2 -16 3297 3250 195 208 104 0 chr4 117930913 117930961 -84397386 - L2 LINE L2 -9 3304 3252 1581 164 74 0 chr4 117931010 117931279 -84397068 + AluJb SINE Alu 7 295 -17 766 253 42 16 chr4 117931298 117931488 -84396859 - MIR SINE MIR -67 195 1 1058 72 7 26 chr4 117932481 117932633 -84395714 - L1PA8 LINE L1 -2 6170 6022 2057 149 118 0 chr4 117933003 117933386 -84394961 + MSTA LTR MaLR 1 428 0 4159 163 75 63 chr4 117935899 117936106 -84392241 - L1MC3 LINE L1 -2 7783 7580 1817 202 40 3 chr4 117936106 117936458 -84391889 + MLT1A1 LTR MaLR 1 365 0 4159 163 75 63 chr4 117936458 117936644 -84391703 - L1MC3 LINE L1 -205 7580 7398 1509 160 125 49 chr4 117936644 117937012 -84391335 + MSTD LTR MaLR 1 396 0 4159 163 75 63 chr4 117937012 117937240 -84391107 - L1MC3 LINE L1 -387 7398 7174 289 232 0 0 chr4 117937240 117937296 -84391051 - MLT1F1 LTR MaLR -477 90 35 4159 163 75 63 chr4 117937296 117937632 -84390715 - L1MC3 LINE L1 -611 7174 6757 4782 91 94 43 chr4 117937760 117938631 -84389716 + L1PA16 LINE L1 5132 6057 -109 1629 204 0 20 chr4 117938631 117938935 -84389412 + AluJb SINE Alu 1 298 -14 4782 91 94 43 chr4 117938935 117939051 -84389296 + L1PA16 LINE L1 6057 6166 0 29 28 0 0 chr4 117939067 117939103 -84389244 + AT_rich Low_complexity Low_complexity 1 36 0 372 230 162 0 chr4 117939135 117939283 -84389064 - L1MC5 LINE L1 -100 7861 7690 1787 239 112 6 chr4 117939326 117939825 -84388522 + MLT1H1 LTR MaLR 2 553 -2 358 161 0 0 chr4 117939950 117940031 -84388316 + MER63 DNA MER1_type 897 977 -84 483 319 52 9 chr4 117940145 117940358 -84387989 + MIR SINE MIR 2 223 -39 30 0 0 0 chr4 117942324 117942354 -84385993 + AT_rich Low_complexity Low_complexity 1 30 0 1122 285 89 12 chr4 117942470 117942873 -84385474 + L2 LINE L2 815 1248 -2066 1063 277 126 87 chr4 117944115 117944528 -84383819 + L2 LINE L2 1289 1685 -1629 917 73 0 0 chr4 117944528 117944652 -84383695 - L1MA2 LINE L1 0 6304 6181 1063 277 126 87 chr4 117944652 117945018 -84383329 + L2 LINE L2 1685 2098 -1216 24 32 0 0 chr4 117945018 117945049 -84383298 + AT_rich Low_complexity Low_complexity 1 31 0 2044 124 6 0 chr4 117945049 117945363 -84382984 - L1PB1 LINE L1 -1 6150 5835 549 188 143 0 chr4 117946545 117946657 -84381690 + FLAM_A SINE Alu 1 128 -5 695 159 28 91 chr4 117947899 117948018 -84380329 - MIR SINE MIR 0 262 156 1566 87 32 0 chr4 117948018 117948237 -84380110 - L1PA10 LINE L1 -3 6165 5940 695 159 28 91 chr4 117948237 117948293 -84380054 - MIR SINE MIR -106 156 98 594 216 144 0 chr4 117949124 117949263 -84379084 - MLT1D LTR MaLR 0 505 347 1986 119 3 48 chr4 117949276 117949587 -84378760 + MER1B DNA MER1_type 1 297 -42 409 265 23 38 chr4 117949582 117949714 -84378633 - MLT1D LTR MaLR -375 130 1 * 618 294 21 27 chr4 117949821 117950008 -84378339 + MIR3 SINE MIR 17 202 -6 317 314 103 39 chr4 117950389 117950593 -84377754 + MIR SINE MIR 14 230 -32 430 245 0 91 chr4 117951363 117951506 -84376841 + MIR SINE MIR 28 157 -105 2068 127 0 13 chr4 117951979 117952294 -84376053 + AluSq SINE Alu 1 311 -2 2389 57 0 0 chr4 117953504 117953800 -84374547 + AluY SINE Alu 1 296 -15 22 0 0 0 chr4 117953870 117953892 -84374455 + AT_rich Low_complexity Low_complexity 1 22 0 1254 138 165 31 chr4 117954165 117954449 -84373898 - AluSx SINE Alu 0 312 2 21 0 0 0 chr4 117956508 117956529 -84371818 + AT_rich Low_complexity Low_complexity 1 21 0 2309 121 9 0 chr4 117956737 117957084 -84371263 - L1PA13 LINE L1 0 6163 5814 360 102 0 0 chr4 117957806 117957865 -84370482 - L1MA8 LINE L1 -3 6288 6230 199 311 14 0 chr4 117958606 117958680 -84369667 + MIR SINE MIR 80 154 -108 344 292 26 18 chr4 117960140 117960253 -84368094 + MIR SINE MIR 8 121 -141 541 274 69 22 chr4 117960264 117960453 -84367894 + MIR SINE MIR 64 260 -2 274 226 24 12 chr4 117967667 117967751 -84360596 + GA-rich Low_complexity Low_complexity 2 86 0 25 0 0 0 chr4 117970044 117970069 -84358278 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr4 117975308 117975329 -84353018 + GC_rich Low_complexity Low_complexity 1 21 0 181 275 0 0 chr4 117975331 117975371 -84352976 - L2 LINE L2 -2 3311 3272 225 296 20 20 chr4 117976912 117977010 -84351337 + GA-rich Low_complexity Low_complexity 1 98 0 180 77 0 0 chr4 117978716 117978742 -84349605 + (TG)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr4 117987177 117987200 -84341147 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 117989843 117989867 -84338480 + AT_rich Low_complexity Low_complexity 1 24 0 450 0 0 0 chr4 117991551 117991601 -84336746 + (GTTTG)n Simple_repeat Simple_repeat 2 51 0 302 65 0 22 chr4 117994623 117994669 -84333678 + (TA)n Simple_repeat Simple_repeat 1 45 0 1964 130 0 0 chr4 117996840 117997174 -84331173 + AluSx SINE Alu 1 334 0 1128 169 5 5 chr4 117997736 117997925 -84330422 - MER5A DNA MER1_type 0 189 1 634 266 0 11 chr4 117997930 117998107 -84330240 - MER5B DNA MER1_type 0 178 4 338 295 54 27 chr4 117998650 117998762 -84329585 + MIR SINE MIR 78 192 -70 245 337 42 0 chr4 117998767 117998862 -84329485 + L2 LINE L2 3210 3308 -5 719 278 94 8 chr4 118001118 118001352 -84326995 - MIR SINE MIR 0 262 9 373 281 109 31 chr4 118001927 118002055 -84326292 - MIR SINE MIR -69 193 56 455 249 170 9 chr4 118002072 118002235 -84326112 - MIR SINE MIR -10 252 65 444 307 0 22 chr4 118002326 118002463 -84325884 + MIR SINE MIR 123 256 -6 619 250 89 0 chr4 118002498 118002666 -84325681 + MIR SINE MIR 32 214 -48 748 250 91 4 chr4 118002853 118003085 -84325262 + MIR SINE MIR 9 260 -2 423 310 32 26 chr4 118003284 118003439 -84324908 - MIR3 SINE MIR -19 189 34 7380 120 34 8 chr4 118003966 118005165 -84323182 + Tigger3b DNA MER2_type 1 1231 0 266 244 87 43 chr4 118005440 118005555 -84322792 - MLT1J LTR MaLR -42 469 350 475 298 71 50 chr4 118005579 118005975 -84322372 + MLT1J LTR MaLR 8 383 -67 615 222 65 116 chr4 118006073 118006348 -84321999 - MLT1J LTR MaLR -207 304 44 613 289 82 33 chr4 118007693 118008092 -84320255 + MLT1J LTR MaLR 1 493 -18 1711 175 49 15 chr4 118008354 118008680 -84319667 + MLT1A1 LTR MaLR 29 365 0 298 284 63 0 chr4 118009772 118009867 -84318480 + L2 LINE L2 3213 3313 0 199 172 17 17 chr4 118011213 118011271 -84317076 + CT-rich Low_complexity Low_complexity 3 60 0 180 333 49 25 chr4 118011296 118011377 -84316970 - L2 LINE L2 -36 3236 3154 271 307 174 30 chr4 118011623 118012053 -84316294 - L2 LINE L2 -468 2846 2355 447 160 13 0 chr4 118013075 118013150 -84315197 - FLAM_A SINE Alu -14 128 53 230 204 0 0 chr4 118014872 118014921 -84313426 + L2 LINE L2 3224 3272 0 825 290 156 0 chr4 118015009 118015374 -84312973 + LTR33A LTR ERVL 62 483 -40 328 355 123 14 chr4 118016520 118016658 -84311689 - MIR3 SINE MIR -7 201 49 25 0 0 0 chr4 118018432 118018457 -84309890 + AT_rich Low_complexity Low_complexity 1 25 0 323 167 36 36 chr4 118018457 118018541 -84309806 - L1M3 LINE L1 -490 5681 5598 26 0 0 0 chr4 118018717 118018743 -84309604 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr4 118018843 118018870 -84309477 + AT_rich Low_complexity Low_complexity 1 27 0 2270 107 3 0 chr4 118018876 118019176 -84309171 - AluSx SINE Alu -9 303 3 1605 216 77 29 chr4 118019210 118019692 -84308655 - MLT1D LTR MaLR 0 505 1 2538 276 65 68 chr4 118020169 118021450 -84306897 + L1MCc LINE L1 17 1293 -5130 180 0 0 0 chr4 118021450 118021470 -84306877 + (A)n Simple_repeat Simple_repeat 1 20 0 11012 173 24 19 chr4 118021520 118024674 -84303673 + L1MA7 LINE L1 3110 6280 -11 514 280 55 11 chr4 118024707 118025055 -84303292 + L1MCc LINE L1 1328 1698 -4887 1989 129 7 0 chr4 118025186 118025480 -84302867 + AluSx SINE Alu 3 298 -14 366 210 28 6 chr4 118025498 118025674 -84302673 + (TA)n Simple_repeat Simple_repeat 1 180 0 2203 249 110 21 chr4 118025687 118027587 -84300760 + L1MCc LINE L1 1889 4068 -2873 22 0 0 0 chr4 118027596 118027618 -84300729 + AT_rich Low_complexity Low_complexity 1 22 0 1599 115 94 30 chr4 118027618 118027948 -84300399 + L1MA8 LINE L1 5938 6288 -3 41118 36 22 34 chr4 118028234 118034516 -84293831 + L1PA2 LINE L1 4 6155 0 373 264 32 151 chr4 118034510 118034821 -84293526 - MLT1F-int LTR MaLR -75 1296 1023 * 365 370 6 6 chr4 118035023 118035188 -84293159 - MLT1F-int LTR MaLR -509 862 698 658 302 21 21 chr4 118035380 118035671 -84292676 - MLT1F-int LTR MaLR -770 601 311 281 312 18 35 chr4 118035666 118035836 -84292511 - MLT1F-int LTR MaLR -1191 180 14 * 2172 222 47 28 chr4 118035839 118036371 -84291976 - MLT1F LTR MaLR 0 542 1 306 249 141 52 chr4 118036406 118036619 -84291728 - L3 LINE CR1 -705 872 641 2228 117 48 31 chr4 118037141 118037499 -84290848 - THE1B LTR MaLR 0 364 1 2063 146 7 0 chr4 118038396 118038704 -84289643 - AluJb SINE Alu -2 310 1 2374 82 3 0 chr4 118038777 118039083 -84289264 + AluY SINE Alu 1 307 -4 29 60 0 0 chr4 118040343 118040393 -84287954 + AT_rich Low_complexity Low_complexity 1 50 0 22 35 0 0 chr4 118040424 118040453 -84287894 + AT_rich Low_complexity Low_complexity 1 29 0 246 261 46 15 chr4 118041107 118041172 -84287175 + L2 LINE L2 3238 3304 -9 186 103 0 0 chr4 118041895 118041924 -84286423 + (TG)n Simple_repeat Simple_repeat 1 29 0 33 73 0 0 chr4 118043180 118043248 -84285099 + AT_rich Low_complexity Low_complexity 1 68 0 902 287 71 48 chr4 118043594 118044201 -84284146 - L1ME4a LINE L1 -61 6060 5412 424 276 40 46 chr4 118044201 118044353 -84283994 - L2 LINE L2 -5 3308 3158 653 290 229 27 chr4 118044386 118045024 -84283323 - L2 LINE L2 -2238 1076 310 385 330 73 21 chr4 118045251 118045399 -84282948 - L1ME4a LINE L1 -813 5333 5167 482 234 55 16 chr4 118045399 118045527 -84282820 - FLAM_A SINE Alu 0 133 1 385 330 73 21 chr4 118045527 118045611 -84282736 - L1ME4a LINE L1 -979 5167 5089 216 0 0 0 chr4 118045637 118045661 -84282686 + (TA)n Simple_repeat Simple_repeat 1 24 0 1776 149 0 24 chr4 118045666 118045961 -84282386 - AluJb SINE Alu -24 288 1 319 300 24 58 chr4 118046548 118046783 -84281564 - MLT1J1 LTR MaLR -240 271 9 4372 43 2 0 chr4 118047155 118047685 -84280662 - L1PA8 LINE L1 -13 6159 5629 31 0 0 0 chr4 118050435 118050466 -84277881 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr4 118051002 118051035 -84277312 + AT_rich Low_complexity Low_complexity 1 33 0 544 276 21 7 chr4 118051512 118051657 -84276690 - MIR SINE MIR -75 187 41 586 271 145 5 chr4 118051691 118051905 -84276442 + MIR SINE MIR 19 262 0 1155 301 12 9 chr4 118052070 118052402 -84275945 + MLT1I LTR MaLR 63 395 -14 1414 160 38 17 chr4 118052500 118052793 -84275554 + MER58B DNA MER1_type 43 341 0 1560 168 39 0 chr4 118052833 118053089 -84275258 - AluJo SINE Alu -14 298 33 669 211 103 75 chr4 118053116 118053161 -84275186 - MER20 DNA MER1_type 0 219 177 2469 50 0 7 chr4 118053161 118053458 -84274889 - AluY SINE Alu -16 295 1 669 211 103 75 chr4 118053458 118053625 -84274722 - MER20 DNA MER1_type -42 177 1 313 118 0 0 chr4 118053785 118053836 -84274511 - MLT2B1 LTR ERVL -6 514 464 1781 195 61 42 chr4 118053877 118054354 -84273993 - MLT2B1 LTR ERVL -34 486 1 2615 172 45 28 chr4 118055518 118056095 -84272252 + L1MB7 LINE L1 5585 6171 -13 428 258 168 24 chr4 118056505 118056672 -84271675 + MLT1K LTR MaLR 270 460 -128 2331 80 0 0 chr4 118057122 118057408 -84270939 + AluSg SINE Alu 1 286 -24 309 283 131 0 chr4 118057443 118057542 -84270805 + L2 LINE L2 1826 1937 -1377 11823 187 64 3 chr4 118058381 118060714 -84267633 + L1M2 LINE L1 43 2519 -4330 6292 99 43 14 chr4 118060707 118061796 -84266551 + L1MA4A LINE L1 5180 6298 -5 * 1738 176 0 23 chr4 118063566 118063868 -84264479 + AluJo SINE Alu 8 302 -10 23 0 0 0 chr4 118063871 118063894 -84264453 + AT_rich Low_complexity Low_complexity 1 23 0 1913 180 0 0 chr4 118064179 118064479 -84263868 + AluJo SINE Alu 1 300 -12 1817 176 149 10 chr4 118064506 118064914 -84263433 - MLT1C LTR MaLR -2 465 1 6283 82 0 0 chr4 118065081 118066286 -84262061 - L1PA14 LINE L1 -13 6148 4931 567 205 212 39 chr4 118066429 118066688 -84261659 - L2 LINE L2 0 3313 3010 208 355 47 9 chr4 118067394 118067501 -84260846 + L2 LINE L2 3182 3292 -21 2399 226 88 5 chr4 118067504 118067847 -84260500 + L1M4 LINE L1 4458 4771 -1375 212 0 36 0 chr4 118067847 118067875 -84260472 + (CA)n Simple_repeat Simple_repeat 2 30 0 2399 226 88 5 chr4 118067875 118068291 -84260056 + L1M4 LINE L1 4771 5280 -866 2269 87 6 22 chr4 118068292 118068603 -84259744 - AluY SINE Alu -5 306 1 1928 101 4 4 chr4 118068647 118068915 -84259432 - AluSg SINE Alu -14 296 29 581 314 50 43 chr4 118069058 118069357 -84258990 + MLT1I LTR MaLR 37 337 -72 1551 133 13 87 chr4 118069357 118069657 -84258690 + AluJb SINE Alu 29 306 -6 9526 155 44 79 chr4 118069712 118069889 -84258458 + L1MC3 LINE L1 5330 5512 -2273 2324 105 0 0 chr4 118069889 118070184 -84258163 - AluSg SINE Alu -15 295 1 9526 155 44 79 chr4 118070184 118071766 -84256581 + L1MC3 LINE L1 5512 7149 -636 2469 34 10 0 chr4 118071766 118072061 -84256286 + AluY SINE Alu 1 298 -13 261 0 0 0 chr4 118072066 118072095 -84256252 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 9526 155 44 79 chr4 118072095 118072167 -84256180 + L1MC3 LINE L1 7153 7226 -559 694 198 0 0 chr4 118072167 118072293 -84256054 + FLAM_C SINE Alu 1 126 -17 9526 155 44 79 chr4 118072293 118072715 -84255632 + L1MC3 LINE L1 7226 7631 -154 2304 110 0 0 chr4 118072766 118073074 -84255273 - AluY SINE Alu -3 308 1 1633 92 0 35 chr4 118073191 118073418 -84254929 - AluSq SINE Alu -9 304 86 303 140 0 0 chr4 118073590 118073640 -84254707 + (GGAA)n Simple_repeat Simple_repeat 2 51 0 21 36 0 0 chr4 118073951 118073979 -84254368 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 118074329 118074357 -84253990 + AT_rich Low_complexity Low_complexity 1 28 0 2253 68 14 0 chr4 118074660 118074956 -84253391 - AluY SINE Alu -11 300 1 313 211 96 102 chr4 118075043 118075209 -84253138 + L1M2 LINE L1 800 964 -5885 23 0 0 0 chr4 118075817 118075840 -84252507 + AT_rich Low_complexity Low_complexity 1 23 0 181 236 109 0 chr4 118075842 118075897 -84252450 + MIR SINE MIR 156 216 -46 233 333 26 0 chr4 118077683 118077761 -84250586 - L2 LINE L2 -4 3309 3230 22 35 0 0 chr4 118078883 118078912 -84249435 + AT_rich Low_complexity Low_complexity 1 29 0 1914 143 143 11 chr4 118079913 118080291 -84248056 + MSTA LTR MaLR 1 428 0 1663 140 16 84 chr4 118080499 118080651 -84247696 + AluJb SINE Alu 1 121 -191 2425 65 0 0 chr4 118080651 118080942 -84247405 + AluY SINE Alu 2 292 -19 1663 140 16 84 chr4 118080942 118081110 -84247237 + AluJb SINE Alu 121 299 -13 1658 175 19 0 chr4 118081114 118081382 -84246965 + AluJo SINE Alu 2 274 -38 978 56 0 0 chr4 118081382 118081507 -84246840 + (GAA)n Simple_repeat Simple_repeat 2 126 0 405 58 0 0 chr4 118081607 118081659 -84246688 + (GAA)n Simple_repeat Simple_repeat 3 54 0 492 335 125 39 chr4 118082205 118082742 -84245605 - L3 LINE CR1 -62 1515 933 2139 187 41 67 chr4 118082742 118082773 -84245574 - MLT1F LTR MaLR -14 528 498 1097 172 0 0 chr4 118082773 118082947 -84245400 + FAM SINE Alu 1 174 -1 2139 187 41 67 chr4 118082947 118083450 -84244897 - MLT1F LTR MaLR -44 498 8 1536 62 9 9 chr4 118083543 118083754 -84244593 + L1PA3 LINE L1 5938 6148 -7 224 259 17 0 chr4 118184080 118184138 -84144209 + L2 LINE L2 3210 3268 -4 468 0 0 0 chr4 118184548 118184600 -84143747 + (TG)n Simple_repeat Simple_repeat 2 53 0 186 103 0 0 chr4 118185057 118185086 -84143261 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 186 43 0 0 chr4 118185754 118185777 -84142570 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 307 174 0 41 chr4 118188092 118188190 -84140157 + T-rich Low_complexity Low_complexity 4 97 0 1556 148 49 3 chr4 118188918 118189222 -84139125 + MER33 DNA MER1_type 6 323 -1 22 35 0 0 chr4 118189703 118189732 -84138615 + AT_rich Low_complexity Low_complexity 1 29 0 263 213 13 0 chr4 118191485 118191560 -84136787 + CT-rich Low_complexity Low_complexity 1 76 0 360 327 25 43 chr4 118192659 118192821 -84135526 - MIR SINE MIR -93 169 11 188 287 210 13 chr4 118193185 118193342 -84135005 + L2 LINE L2 3121 3308 -5 21 0 0 0 chr4 118193596 118193617 -84134730 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 118193755 118193785 -84134562 + AT_rich Low_complexity Low_complexity 1 30 0 298 376 16 0 chr4 118193931 118194056 -84134291 + L2 LINE L2 3180 3306 -7 205 240 0 20 chr4 118194529 118194579 -84133768 - L2 LINE L2 -668 2646 2598 2567 226 42 10 chr4 118195910 118196508 -84131839 + MLT1E2 LTR MaLR 1 617 -9 560 233 94 78 chr4 118196740 118196817 -84131530 - MER5A DNA MER1_type 0 189 115 1401 175 39 52 chr4 118196817 118197189 -84131158 + AluJo SINE Alu 1 368 0 560 233 94 78 chr4 118197189 118197290 -84131057 - MER5A DNA MER1_type -74 115 7 1711 275 76 35 chr4 118197596 118198842 -84129505 - L1MEc LINE L1 -2701 3514 2210 1004 320 74 11 chr4 118199143 118199528 -84128819 - L1MEc LINE L1 -4583 1813 1454 429 116 0 0 chr4 118199528 118199597 -84128750 + (TG)n Simple_repeat Simple_repeat 2 70 0 1004 320 74 11 chr4 118199597 118199940 -84128407 - L1MEc LINE L1 -4942 1454 1039 581 313 43 26 chr4 118199944 118200177 -84128170 + MLT1K LTR MaLR 352 588 0 848 286 48 13 chr4 118200266 118200600 -84127747 - MER21B LTR ERV1 -485 378 13 2779 222 31 10 chr4 118200628 118201341 -84127006 + L1MC/D LINE L1 4570 5297 -849 39693 30 27 1 chr4 118201341 118207371 -84120976 + L1HS LINE L1 3 6155 0 986 146 0 6 chr4 118207379 118207544 -84120803 + L1MC/D LINE L1 5286 5449 -884 328 141 0 31 chr4 118207526 118207590 -84120757 - L1MC1 LINE L1 -127 6206 6145 * 36 40 0 0 chr4 118209379 118209429 -84118918 + AT_rich Low_complexity Low_complexity 1 50 0 316 325 51 2 chr4 118209515 118209688 -84118659 - MIR SINE MIR -53 209 30 334 200 0 78 chr4 118209746 118209836 -84118511 + L2 LINE L2 3189 3271 -1 279 236 20 19 chr4 118210381 118210471 -84117876 + GA-rich Low_complexity Low_complexity 1 90 0 361 343 55 20 chr4 118212769 118212915 -84115432 - L2 LINE L2 0 3272 3122 1378 135 117 0 chr4 118212931 118213153 -84115194 + AluSc SINE Alu 50 297 -12 302 346 39 42 chr4 118213160 118213420 -84114927 - L2 LINE L2 -168 3145 2887 460 271 85 0 chr4 118213559 118213677 -84114670 + MER69 DNA AcHobo 1 128 -2398 578 211 26 0 chr4 118213723 118213837 -84114510 + L2 LINE L2 3196 3312 -1 795 169 0 0 chr4 118214684 118214814 -84113533 - FLAM_C SINE Alu -3 130 1 2045 143 0 13 chr4 118216297 118216611 -84111736 - AluSx SINE Alu -1 311 2 30 93 0 0 chr4 118216696 118216782 -84111565 + AT_rich Low_complexity Low_complexity 1 86 0 208 241 86 35 chr4 118217880 118217938 -84110409 - L2 LINE L2 -2 3270 3210 233 380 54 38 chr4 118218013 118218403 -84109944 - L2 LINE L2 -285 2987 2595 201 281 0 0 chr4 118218410 118218467 -84109880 - L2 LINE L2 -946 2368 2312 22 35 0 0 chr4 118219154 118219183 -84109164 + AT_rich Low_complexity Low_complexity 1 29 0 314 358 40 28 chr4 118220306 118220482 -84107865 - MIR SINE MIR -54 208 31 697 370 55 33 chr4 118220499 118221112 -84107235 + L2 LINE L2 2317 2943 -371 9619 82 30 9 chr4 118221325 118223420 -84104927 - L1PA7 LINE L1 0 6154 3994 225 217 235 52 chr4 118223736 118223851 -84104496 - L2 LINE L2 -5 3308 3173 183 80 0 0 chr4 118223878 118223903 -84104444 + (GA)n Simple_repeat Simple_repeat 2 26 0 1878 90 30 4 chr4 118223941 118224207 -84104140 + AluSc SINE Alu 1 273 -36 204 40 0 0 chr4 118224207 118224232 -84104115 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 316 197 0 14 chr4 118224430 118224501 -84103846 - LTR16A LTR ERVL -72 378 309 446 289 105 0 chr4 118224841 118224993 -84103354 - MER63A DNA MER1_type -36 174 7 418 223 50 132 chr4 118225253 118225473 -84102874 - L2 LINE L2 -8 3305 3104 21 57 0 0 chr4 118227340 118227375 -84100972 + AT_rich Low_complexity Low_complexity 1 35 0 442 283 94 17 chr4 118229089 118229271 -84099076 - MIR SINE MIR -65 143 8 2424 88 0 0 chr4 118229405 118229712 -84098635 + AluSg SINE Alu 1 307 -3 315 71 0 0 chr4 118229914 118229956 -84098391 + (T)n Simple_repeat Simple_repeat 1 42 0 254 250 10 70 chr4 118229956 118230056 -84098291 - MIR SINE MIR -164 98 5 212 382 116 18 chr4 118230098 118230609 -84097738 - L2 LINE L2 -423 2891 2331 251 163 0 0 chr4 118230903 118230946 -84097401 + L2 LINE L2 3179 3221 -92 337 192 14 27 chr4 118231020 118231093 -84097254 + L2 LINE L2 3200 3271 -1 32 43 0 0 chr4 118233643 118233689 -84094658 + AT_rich Low_complexity Low_complexity 1 46 0 5836 113 21 30 chr4 118234051 118235327 -84093020 - L1PA16 LINE L1 -9 6157 4883 196 343 148 18 chr4 118235823 118235992 -84092355 + MIR SINE MIR 72 262 0 485 221 0 0 chr4 118236828 118236914 -84091433 + FRAM SINE Alu 59 144 -32 28 29 0 0 chr4 118236921 118236956 -84091391 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr4 118237471 118237513 -84090834 + AT_rich Low_complexity Low_complexity 1 42 0 705 285 51 9 chr4 118237900 118238114 -84090233 - MIR SINE MIR -28 234 12 21 36 0 0 chr4 118238366 118238394 -84089953 + AT_rich Low_complexity Low_complexity 1 28 0 632 217 56 31 chr4 118238754 118238915 -84089432 + MIR SINE MIR 96 260 -2 251 195 53 97 chr4 118239238 118239351 -84088996 + MER94 DNA DNA 23 130 -4 22 0 0 0 chr4 118239968 118239990 -84088357 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 118240064 118240089 -84088258 + AT_rich Low_complexity Low_complexity 1 25 0 480 294 71 0 chr4 118240361 118240487 -84087860 + L2 LINE L2 3134 3268 -4 24 32 0 0 chr4 118241657 118241688 -84086659 + AT_rich Low_complexity Low_complexity 1 31 0 33 43 0 0 chr4 118242758 118242805 -84085542 + AT_rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr4 118243187 118243215 -84085132 + AT_rich Low_complexity Low_complexity 1 28 0 1854 117 54 17 chr4 118244737 118245035 -84083312 + AluY SINE Alu 3 311 0 295 240 90 20 chr4 118245424 118245524 -84082823 - L3 LINE CR1 -3 1574 1468 475 339 54 12 chr4 118245545 118245787 -84082560 - L3 LINE CR1 -341 1236 985 188 178 0 22 chr4 118246353 118246398 -84081949 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 2853 229 75 18 chr4 118247350 118248074 -84080273 + MER21B LTR ERV1 98 862 -1 1899 144 52 72 chr4 118248439 118248843 -84079504 - MSTD LTR MaLR 0 396 1 230 122 0 0 chr4 118249166 118249207 -84079140 - L1MA3 LINE L1 0 6305 6265 230 341 61 8 chr4 118249212 118249344 -84079003 - MIR SINE MIR -7 255 117 204 149 0 0 chr4 118250267 118250314 -84078033 + (GTTTG)n Simple_repeat Simple_repeat 4 50 0 21 0 0 0 chr4 118251437 118251458 -84076889 + AT_rich Low_complexity Low_complexity 1 21 0 767 306 32 8 chr4 118251753 118252005 -84076342 + MIR SINE MIR 2 259 -3 2264 100 0 53 chr4 118252611 118252932 -84075415 + AluSg SINE Alu 1 304 -6 1683 195 82 3 chr4 118252956 118253284 -84075063 + MLT2D LTR ERVL 2 355 -59 222 255 0 0 chr4 118253293 118253387 -84074960 + (TA)n Simple_repeat Simple_repeat 2 95 0 395 75 0 0 chr4 118253389 118253442 -84074905 + MLT2D LTR ERVL 468 520 0 285 82 17 9 chr4 118253741 118253800 -84074547 - L1PA10 LINE L1 0 6172 6116 2237 100 0 35 chr4 118254164 118254483 -84073864 + AluSg1 SINE Alu 1 308 -1 23 54 0 0 chr4 118255086 118255123 -84073224 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 118255233 118255255 -84073092 + AT_rich Low_complexity Low_complexity 1 22 0 225 269 0 0 chr4 118255618 118255685 -84072662 + T-rich Low_complexity Low_complexity 1 67 0 15376 84 4 1 chr4 118255744 118258621 -84069726 - L1PA7 LINE L1 -7 6147 3244 31 0 0 0 chr4 118260008 118260039 -84068308 + AT_rich Low_complexity Low_complexity 1 31 0 2227 124 0 3 chr4 118260374 118260672 -84067675 + AluSx SINE Alu 1 297 -15 274 133 83 17 chr4 118261147 118261207 -84067140 - MIR SINE MIR -102 106 43 449 253 175 7 chr4 118262050 118262204 -84066143 - MER5A DNA MER1_type 0 189 10 4551 263 138 46 chr4 118262316 118263137 -84065210 + L2 LINE L2 38 782 -2532 1783 199 0 3 chr4 118263137 118263444 -84064903 - AluJo SINE Alu -6 306 1 4551 263 138 46 chr4 118263444 118264247 -84064100 + L2 LINE L2 782 1510 -1804 2251 110 0 7 chr4 118264247 118264557 -84063790 + AluSg SINE Alu 1 308 -2 4551 263 138 46 chr4 118264557 118264994 -84063353 + L2 LINE L2 1510 2290 -1024 981 264 16 119 chr4 118264997 118265501 -84062846 + L2 LINE L2 2862 3313 0 297 191 16 16 chr4 118265912 118265975 -84062372 + L2 LINE L2 3210 3272 0 2230 211 19 2 chr4 118266018 118266482 -84061865 + MLT1F LTR MaLR 71 542 0 997 132 137 5 chr4 118267277 118267474 -84060873 - MLT2D LTR ERVL -190 224 2 2175 114 3 0 chr4 118267498 118267788 -84060559 - AluSg SINE Alu -19 291 1 207 0 0 0 chr4 118267872 118267895 -84060452 + (TTTTTG)n Simple_repeat Simple_repeat 4 26 0 250 283 33 0 chr4 118267959 118268041 -84060306 + (CATATA)n Simple_repeat Simple_repeat 2 91 -34 201 39 0 0 chr4 118268041 118268067 -84060280 + (TG)n Simple_repeat Simple_repeat 2 27 0 250 283 33 0 chr4 118268067 118268104 -84060243 + (CATATA)n Simple_repeat Simple_repeat 91 125 0 2734 260 58 22 chr4 118268523 118269650 -84058697 + L2 LINE L2 2139 3313 0 514 96 24 0 chr4 118270136 118270219 -84058128 - MER53 DNA DNA 0 189 105 1346 198 58 0 chr4 118270247 118270540 -84057807 + MER58B DNA MER1_type 31 340 -1 1157 154 14 5 chr4 118271169 118271390 -84056957 + Tigger1 DNA MER2_type 24 246 -2172 10227 25 0 0 chr4 118272092 118274066 -84054281 + L1PA2 LINE L1 4179 6152 -3 289 301 124 0 chr4 118274244 118274357 -84053990 - L2 LINE L2 -10 3262 3136 245 277 67 50 chr4 118274495 118274614 -84053733 - L2 LINE L2 -13 3259 3139 280 246 49 0 chr4 118275466 118275527 -84052820 - MIR SINE MIR -162 100 37 707 187 117 12 chr4 118275640 118275811 -84052536 + MER20 DNA MER1_type 31 219 0 299 244 24 79 chr4 118276008 118276172 -84052175 + L1ME4a LINE L1 5903 6057 -64 5080 93 10 129 chr4 118276201 118277240 -84051107 + L1PB2 LINE L1 5225 6143 -8 34 42 0 0 chr4 118277271 118277319 -84051028 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr4 118277812 118277833 -84050514 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 118277968 118277989 -84050358 + AT_rich Low_complexity Low_complexity 1 21 0 14261 193 35 16 chr4 118278147 118279663 -84048684 - L1PB1 LINE L1 -1 6866 5381 2188 113 20 0 chr4 118279663 118279964 -84048383 - AluSg1 SINE Alu -2 307 1 14261 193 35 16 chr4 118279964 118280193 -84048154 - L1PB1 LINE L1 -1486 5381 5158 189 0 0 0 chr4 118280193 118280214 -84048133 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 14261 193 35 16 chr4 118280214 118284969 -84043378 - L1PB1 LINE L1 -1709 5158 81 263 270 0 0 chr4 118285343 118285417 -84042930 + (TG)n Simple_repeat Simple_repeat 2 75 0 199 250 0 0 chr4 118285469 118285513 -84042834 + L2 LINE L2 3268 3311 -2 646 240 29 11 chr4 118287838 118288013 -84040334 - MER5B DNA MER1_type 0 178 1 547 276 114 31 chr4 118288120 118288348 -84039999 - MIR SINE MIR -4 258 12 734 205 13 19 chr4 118288351 118288507 -84039840 + MER106B DNA MER1_type 1 155 -904 23 0 0 0 chr4 118288509 118288532 -84039815 + AT_rich Low_complexity Low_complexity 1 23 0 223 279 0 0 chr4 118290186 118290229 -84038118 - L2 LINE L2 -16 3256 3214 379 283 96 79 chr4 118290456 118290968 -84037379 - MLT1K LTR MaLR -23 565 2 341 211 240 0 chr4 118290980 118291084 -84037263 - MER5A DNA MER1_type -19 170 42 341 294 39 0 chr4 118293268 118293370 -84034977 - L2 LINE L2 -25 3247 3142 199 351 18 0 chr4 118293798 118293855 -84034492 - L2 LINE L2 -216 3097 3040 330 277 58 22 chr4 118294003 118294140 -84034207 + MIR SINE MIR 121 262 0 199 339 42 34 chr4 118294227 118294345 -84034002 - L2 LINE L2 -480 2834 2716 3015 109 9 2 chr4 118294422 118294864 -84033483 + L1PA14 LINE L1 5704 6148 -13 329 278 62 45 chr4 118294920 118295096 -84033251 - MIR SINE MIR 0 262 84 1467 228 45 11 chr4 118296311 118296689 -84031658 + LTR52 LTR ERVL 12 402 -19 213 39 0 0 chr4 118296818 118296844 -84031503 + (CA)n Simple_repeat Simple_repeat 1 26 0 847 182 0 0 chr4 118297034 118297166 -84031181 + FLAM_C SINE Alu 2 133 0 947 223 15 15 chr4 118297190 118297396 -84030951 - MIR SINE MIR -10 252 47 25 0 0 0 chr4 118297478 118297503 -84030844 + AT_rich Low_complexity Low_complexity 1 25 0 455 315 99 29 chr4 118297776 118298189 -84030158 + MLT1L LTR MaLR 151 592 -23 707 272 101 26 chr4 118300159 118300387 -84027960 + MIR SINE MIR 8 252 -10 227 262 89 83 chr4 118300502 118300670 -84027677 + L2 LINE L2 2891 3059 -213 194 149 43 64 chr4 118300874 118300921 -84027426 + L2 LINE L2 3267 3312 -1 521 278 42 25 chr4 118302441 118302799 -84025548 - LTR33 LTR ERVL -8 513 119 509 283 92 40 chr4 118303809 118304155 -84024192 + HAL1 LINE L1 258 621 -1886 1725 172 25 3 chr4 118304213 118304498 -84023849 + AluJb SINE Alu 11 301 -11 2210 118 0 0 chr4 118304703 118305000 -84023347 + AluSg SINE Alu 1 297 -13 323 242 16 81 chr4 118305008 118305132 -84023215 + HAL1 LINE L1 993 1108 -1399 883 250 139 16 chr4 118305134 118305566 -84022781 + HAL1 LINE L1 1442 1926 -581 221 211 28 0 chr4 118305566 118305637 -84022710 + GA-rich Low_complexity Low_complexity 1 73 0 240 111 0 0 chr4 118305688 118305733 -84022614 + (GGAA)n Simple_repeat Simple_repeat 2 46 0 691 133 16 8 chr4 118305783 118305911 -84022436 + GA-rich Low_complexity Low_complexity 2 130 0 1184 101 6 0 chr4 118305914 118306092 -84022255 + (GGGA)n Simple_repeat Simple_repeat 2 180 0 1101 155 17 6 chr4 118306211 118306421 -84021926 + FRAM SINE Alu 1 212 0 545 291 79 43 chr4 118306446 118306838 -84021509 + HAL1 LINE L1 2083 2488 -19 24 0 0 0 chr4 118306879 118306903 -84021444 + AT_rich Low_complexity Low_complexity 1 24 0 1908 121 62 0 chr4 118306981 118307270 -84021077 + AluSx SINE Alu 1 307 -5 203 271 167 0 chr4 118307391 118307487 -84020860 + MIR SINE MIR 150 261 -1 569 284 142 26 chr4 118307657 118308009 -84020338 + MLT1I LTR MaLR 1 393 -16 315 0 0 0 chr4 118308059 118308094 -84020253 + (TC)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr4 118308133 118308154 -84020193 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 118309541 118309568 -84018779 + AT_rich Low_complexity Low_complexity 1 27 0 2285 88 3 0 chr4 118310746 118311040 -84017307 + AluY SINE Alu 1 295 -16 286 212 0 71 chr4 118311512 118311597 -84016750 - MIR SINE MIR -83 179 101 511 216 48 174 chr4 118312224 118312515 -84015832 + MIR SINE MIR 7 260 -2 2078 91 0 14 chr4 118313010 118313319 -84015028 + AluSc SINE Alu 1 305 0 285 140 0 0 chr4 118314812 118314862 -84013485 - Tigger4(Zombi) DNA MER2_type -441 2290 2241 1026 202 87 10 chr4 118315275 118315483 -84012864 + MER58A DNA MER1_type 1 224 0 9433 104 45 19 chr4 118316066 118316222 -84012125 - Tigger4(Zombi) DNA MER2_type -4 2727 2577 243 0 0 0 chr4 118316222 118316249 -84012098 + (TA)n Simple_repeat Simple_repeat 1 27 0 9433 104 45 19 chr4 118316249 118317633 -84010714 - Tigger4(Zombi) DNA MER2_type -154 2577 1146 1682 105 8 4 chr4 118317634 118317901 -84010446 + L1MA2 LINE L1 6037 6304 0 24 0 0 0 chr4 118317901 118317925 -84010422 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr4 118418759 118418788 -83909559 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 118419043 118419065 -83909282 + AT_rich Low_complexity Low_complexity 1 22 0 195 320 0 0 chr4 118420392 118420442 -83907905 + L2 LINE L2 2599 2648 -666 43894 41 1 4 chr4 118420448 118426647 -83901700 - L1PA2 LINE L1 0 6155 1 2334 88 0 0 chr4 118426655 118426949 -83901398 - AluY SINE Alu -17 294 1 23 0 0 0 chr4 118426992 118427015 -83901332 + AT_rich Low_complexity Low_complexity 1 23 0 3159 146 23 26 chr4 118427526 118428055 -83900292 + MER1A DNA MER1_type 1 527 0 1673 136 3 71 chr4 118428850 118429145 -83899202 - AluSx SINE Alu -37 275 1 213 192 80 16 chr4 118429404 118429529 -83898818 + (TA)n Simple_repeat Simple_repeat 2 134 0 2089 128 10 0 chr4 118429578 118429875 -83898472 - AluSg SINE Alu -8 302 3 280 244 41 159 chr4 118432052 118432348 -83895999 + MIR3 SINE MIR 1 260 -2 27 0 0 0 chr4 118432392 118432419 -83895928 + AT_rich Low_complexity Low_complexity 1 27 0 285 232 0 72 chr4 118432821 118432890 -83895457 + L2 LINE L2 3250 3313 0 206 322 99 25 chr4 118433119 118433240 -83895107 + MIR SINE MIR 117 246 -16 10239 39 4 0 chr4 118434021 118436024 -83892323 - L1PA4 LINE L1 0 6155 4131 228 258 90 84 chr4 118436269 118436424 -83891923 + MIR SINE MIR 12 167 -95 274 379 80 23 chr4 118436520 118436788 -83891559 + L2 LINE L2 2707 2987 -285 407 330 29 76 chr4 118436917 118437232 -83891115 + L2 LINE L2 1138 1437 -1877 22 35 0 0 chr4 118437496 118437525 -83890822 + AT_rich Low_complexity Low_complexity 1 29 0 323 315 55 42 chr4 118437549 118437714 -83890633 - L2 LINE L2 -218 3054 2888 359 307 50 0 chr4 118438229 118438330 -83890017 - L2 LINE L2 -1125 2189 2084 23 33 0 0 chr4 118438695 118438725 -83889622 + AT_rich Low_complexity Low_complexity 1 30 0 5242 145 16 21 chr4 118439000 118440442 -83887905 - L1PA16 LINE L1 0 6166 4728 24 32 0 0 chr4 118440946 118440977 -83887370 + AT_rich Low_complexity Low_complexity 1 31 0 950 186 27 11 chr4 118441315 118441498 -83886849 - MER20 DNA MER1_type 0 219 34 14389 98 8 2 chr4 118441776 118444635 -83883712 - L1PA8 LINE L1 -3 6169 3303 13096 208 46 24 chr4 118445341 118446753 -83881594 - L1PA16 LINE L1 -26 6197 4817 1909 212 38 75 chr4 118446753 118447328 -83881019 - MLT2B3 LTR ERVL 0 554 1 13096 208 46 24 chr4 118447328 118451490 -83876857 - L1PA16 LINE L1 -1406 4817 400 370 299 61 55 chr4 118451584 118452093 -83876254 - L1M4 LINE L1 -2281 3865 3354 573 301 37 41 chr4 118452136 118452382 -83875965 - MIR SINE MIR -1 261 17 305 304 65 49 chr4 118452423 118453345 -83875002 - L1M4 LINE L1 -2832 3314 2378 24789 42 47 1 chr4 118453576 118456723 -83871624 - L1P LINE L1 -2852 3294 2 1726 182 35 25 chr4 118457184 118457580 -83870767 - L1MA7 LINE L1 0 6291 5892 908 248 178 4 chr4 118457680 118457938 -83870409 + L1M2b LINE L1 504 806 -6403 9439 189 24 34 chr4 118457943 118458584 -83869763 + L1M2b LINE L1 2817 3463 -3745 2271 94 10 13 chr4 118458584 118458893 -83869454 + AluY SINE Alu 2 309 -2 9439 189 24 34 chr4 118458893 118460928 -83867419 + L1M2b LINE L1 3463 5465 -1743 1066 154 42 9 chr4 118460916 118461130 -83867217 + L1MA4A LINE L1 5932 6152 -151 * 183 389 40 20 chr4 118461875 118462024 -83866323 + MIR3 SINE MIR 34 185 -23 226 317 109 0 chr4 118462802 118462903 -83865444 - MIR SINE MIR -2 260 149 1792 60 4 17 chr4 118463138 118463370 -83864977 - AluY SINE Alu -3 308 80 22 0 0 0 chr4 118463432 118463454 -83864893 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr4 118465093 118465116 -83863231 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 7699 21 0 0 chr4 118465116 118466570 -83861777 - L1PA2 LINE L1 -6 6149 4697 2964 165 29 47 chr4 118466684 118467361 -83860986 - L1M2 LINE L1 -473 5818 5182 4939 27 7 8 chr4 118467361 118467954 -83860393 - L1PA3 LINE L1 -3 6152 5561 2964 165 29 47 chr4 118467954 118468156 -83860191 - L1M2 LINE L1 -1109 5182 4978 283 254 30 0 chr4 118468195 118468262 -83860085 + MER2 DNA MER2_type 11 79 -266 8669 142 20 4 chr4 118468267 118469692 -83858655 - Tigger1 DNA MER2_type -1 2417 970 1841 124 0 0 chr4 118469714 118469971 -83858376 - AluSq SINE Alu -23 290 34 3952 180 27 13 chr4 118469987 118470764 -83857583 - L1PB4 LINE L1 -8 6148 5361 1289 240 33 0 chr4 118470849 118471178 -83857169 - L1PB4 LINE L1 -782 5364 5025 641 189 0 0 chr4 118471178 118471284 -83857063 - U6 snRNA snRNA 0 107 2 6009 137 6 49 chr4 118471285 118471855 -83856492 - Tigger1 DNA MER2_type -1443 975 467 2030 130 25 3 chr4 118471855 118472177 -83856170 - L1PA15 LINE L1 0 6165 5837 6009 137 6 49 chr4 118472177 118472624 -83855723 - Tigger1 DNA MER2_type -1951 467 2 823 240 74 35 chr4 118472624 118472879 -83855468 + MER2 DNA MER2_type 81 345 0 4279 165 22 59 chr4 118472879 118473867 -83854480 - L1PB4 LINE L1 -1168 4978 4027 1360 259 101 2 chr4 118473880 118474180 -83854167 - L1M4 LINE L1 -2912 3820 3551 1634 149 20 43 chr4 118474180 118474481 -83853866 - AluSx SINE Alu -18 294 1 1360 259 101 2 chr4 118474481 118474685 -83853662 - L1M4 LINE L1 -3181 3551 3266 4571 200 183 8 chr4 118474692 118475767 -83852580 + L1M1 LINE L1 22 1284 -6281 2623 346 23 24 chr4 118475767 118476506 -83851841 - L1M4 LINE L1 -4981 1672 935 238 328 0 0 chr4 118476556 118476614 -83851733 - L1M4 LINE L1 -6309 344 287 245 275 58 0 chr4 118476642 118476711 -83851636 - L1M4 LINE L1 -6287 366 294 238 358 11 21 chr4 118476749 118476844 -83851503 - L1M4 LINE L1 -6291 362 269 517 318 46 28 chr4 118477091 118477308 -83851039 - L1M3de LINE L1 -5634 1019 799 226 320 57 33 chr4 118477356 118477478 -83850869 - L1M3de LINE L1 -5503 1150 1026 253 269 56 28 chr4 118479407 118479515 -83848832 - L1ME4a LINE L1 -50 6071 5961 253 289 60 0 chr4 118480071 118480154 -83848193 - L1ME4a LINE L1 -2002 5806 5719 397 315 138 51 chr4 118480271 118481243 -83847104 - L1ME4a LINE L1 -762 5384 4329 265 255 198 4 chr4 118481453 118481700 -83846647 - L1ME4a LINE L1 -2144 4002 3708 481 290 106 61 chr4 118482252 118482859 -83845488 - L1ME4a LINE L1 -2876 3270 2627 1037 169 98 4 chr4 118482960 118483215 -83845132 + MER33 DNA MER1_type 46 324 0 21 0 0 0 chr4 118483781 118483802 -83844545 + AT_rich Low_complexity Low_complexity 1 21 0 371 55 0 18 chr4 118484482 118484537 -83843810 + (TA)n Simple_repeat Simple_repeat 2 55 0 5981 31 24 7 chr4 118485386 118486127 -83842220 + L1P LINE L1 4487 5240 -906 42 36 0 0 chr4 118486237 118486293 -83842054 + AT_rich Low_complexity Low_complexity 1 56 0 1015 229 125 21 chr4 118486300 118486724 -83841623 + Charlie2 DNA MER1_type 2200 2667 -195 6110 67 1 2 chr4 118486764 118487557 -83840790 - L1PA6 LINE L1 0 6154 5363 * 13708 59 36 4 chr4 118487556 118489395 -83838952 + L1PA6 LINE L1 3492 5388 -758 6549 163 7 6 chr4 118489374 118490891 -83837456 + L1MA3 LINE L1 4788 6305 0 * 26 0 0 0 chr4 118490891 118490917 -83837430 + AT_rich Low_complexity Low_complexity 1 26 0 345 308 42 14 chr4 118490919 118491133 -83837214 - L1M4 LINE L1 -2966 3180 2961 29 0 0 0 chr4 118493566 118493595 -83834752 + AT_rich Low_complexity Low_complexity 1 29 0 942 227 14 0 chr4 118493633 118493917 -83834430 + L1MC/D LINE L1 5144 5434 -743 21 71 0 0 chr4 118494751 118494793 -83833554 + AT_rich Low_complexity Low_complexity 1 42 0 5607 104 14 0 chr4 118495272 118496070 -83832277 - L1PA14 LINE L1 -1 6160 5352 * 5738 173 29 1 chr4 118496066 118497135 -83831212 - L1PA14 LINE L1 -1480 4666 3568 27 0 0 0 chr4 118497299 118497326 -83831021 + AT_rich Low_complexity Low_complexity 1 27 0 2856 179 15 0 chr4 118497326 118497851 -83830496 + L1PA16 LINE L1 5625 6157 -9 21 0 0 0 chr4 118497873 118497894 -83830453 + AT_rich Low_complexity Low_complexity 1 21 0 899 260 161 44 chr4 118497980 118498485 -83829862 - MLT1F1 LTR MaLR -7 560 1 2808 202 98 48 chr4 118499697 118500563 -83827784 - L1 LINE L1 -1277 4693 3785 964 176 6 12 chr4 118500567 118500737 -83827610 - AluJb SINE Alu -44 268 100 476 189 0 0 chr4 118500788 118500878 -83827469 - AluJb SINE Alu -217 95 6 5903 266 55 33 chr4 118500880 118503573 -83824774 - L1 LINE L1 -2170 3800 1313 2298 88 0 3 chr4 118503573 118503879 -83824468 - AluY SINE Alu -6 305 1 5903 266 55 33 chr4 118503879 118504962 -83823385 - L1 LINE L1 -4657 1313 255 339 342 136 0 chr4 118504933 118505117 -83823230 - L1M3d LINE L1 -5381 510 302 * 1961 272 30 4 chr4 118505132 118505625 -83822722 - L1M3d LINE L1 -5379 512 7 797 206 68 156 chr4 118505648 118506264 -83822083 + L1ME3A LINE L1 3606 4167 -1979 885 166 52 0 chr4 118506280 118506473 -83821874 + L1MA7 LINE L1 6079 6281 -10 2178 122 0 6 chr4 118506475 118506786 -83821561 + AluSx SINE Alu 1 309 -3 267 303 76 14 chr4 118506814 118507025 -83821322 + L1ME3A LINE L1 4176 4399 -1747 1074 267 92 18 chr4 118507033 118507434 -83820913 + L1ME3A LINE L1 5529 5959 -211 5566 183 38 36 chr4 118508138 118509608 -83818739 - L1MC1 LINE L1 0 6333 4868 1661 133 0 16 chr4 118509608 118509902 -83818445 - AluSq SINE Alu 0 331 42 5566 183 38 36 chr4 118509902 118510037 -83818310 - L1MC1 LINE L1 -1465 4868 4731 1792 151 140 11 chr4 118510037 118510415 -83817932 + MSTA LTR MaLR 2 428 0 5566 183 38 36 chr4 118510415 118510542 -83817805 - L1MC1 LINE L1 -1602 4731 4606 26 50 0 0 chr4 118510933 118510973 -83817374 + AT_rich Low_complexity Low_complexity 1 40 0 935 55 0 16 chr4 118511135 118511263 -83817084 - L1PA4 LINE L1 -3 6152 6027 1781 114 28 41 chr4 118511363 118511451 -83816896 - L1P5 LINE L1 -595 5556 5468 2158 132 0 0 chr4 118511451 118511762 -83816585 - AluSq SINE Alu 0 313 3 1781 114 28 41 chr4 118511762 118512062 -83816285 - L1P5 LINE L1 -683 5468 5174 * 2582 216 83 22 chr4 118512029 118513649 -83814698 - L1PBa LINE L1 -4951 1912 49 5954 187 34 3 chr4 118513660 118515294 -83813053 - L1MC1 LINE L1 -5 6328 4643 926 358 99 32 chr4 118515370 118516114 -83812233 + L2 LINE L2 1932 2806 -507 1803 147 43 0 chr4 118516114 118516413 -83811934 + AluJb SINE Alu 1 312 0 926 358 99 32 chr4 118516413 118516921 -83811426 + L2 LINE L2 2806 3278 -35 25 51 0 0 chr4 118517038 118517077 -83811270 + AT_rich Low_complexity Low_complexity 1 39 0 2065 164 11 3 chr4 118517077 118517444 -83810903 + L1PB1 LINE L1 5774 6143 -8 3529 128 0 35 chr4 118517809 118518357 -83809990 + MER1A DNA MER1_type 1 529 0 25047 31 0 0 chr4 118518486 118522292 -83806055 - L1PA4 LINE L1 0 6155 2353 1026 79 0 0 chr4 118522292 118522431 -83805916 - L1PA4 LINE L1 -6003 143 5 236 274 0 32 chr4 118522982 118523044 -83805303 + L2 LINE L2 3192 3251 -62 281 333 10 0 chr4 118523122 118523221 -83805126 + MIR SINE MIR 156 255 -7 22 35 0 0 chr4 118523263 118523292 -83805055 + AT_rich Low_complexity Low_complexity 1 29 0 283 318 51 23 chr4 118524581 118524640 -83803707 + MIR SINE MIR 77 133 -129 408 40 0 0 chr4 118524640 118524690 -83803657 + (TA)n Simple_repeat Simple_repeat 1 50 0 207 0 0 0 chr4 118524689 118524712 -83803635 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 283 318 51 23 chr4 118524690 118524828 -83803519 + MIR SINE MIR 133 257 -5 218 295 16 0 chr4 118525498 118525559 -83802788 - L2 LINE L2 -19 3253 3192 252 366 65 21 chr4 118525781 118525967 -83802380 + L2 LINE L2 2762 2955 -359 521 282 45 16 chr4 118526053 118526298 -83802049 - Tigger8 DNA MER2_type -269 397 146 217 300 206 6 chr4 118526429 118526613 -83801734 - MIR SINE MIR -1 261 42 270 56 0 0 chr4 118526934 118526970 -83801377 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 917 193 0 0 chr4 118527014 118527175 -83801172 - FRAM SINE Alu -5 161 1 2083 97 29 0 chr4 118527797 118528075 -83800272 - AluSc SINE Alu -23 286 1 225 0 0 0 chr4 118528083 118528108 -83800239 + (T)n Simple_repeat Simple_repeat 1 25 0 453 347 83 30 chr4 118528675 118529073 -83799274 + L1ME LINE L1 4774 5192 -954 1657 246 70 42 chr4 118529334 118530020 -83798327 - L1M4 LINE L1 -1160 4986 4282 363 127 13 25 chr4 118530151 118530230 -83798117 + (TA)n Simple_repeat Simple_repeat 1 78 0 287 273 68 11 chr4 118530248 118530336 -83798011 - MIR SINE MIR -165 97 5 2596 239 60 27 chr4 118530370 118531278 -83797069 + L1ME3 LINE L1 5237 6162 0 333 342 98 34 chr4 118531280 118531546 -83796801 + L1ME LINE L1 5500 5782 -339 21 0 0 0 chr4 118531605 118531626 -83796721 + AT_rich Low_complexity Low_complexity 1 21 0 195 69 0 0 chr4 118531746 118531775 -83796572 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2294 4 0 0 chr4 118531780 118532039 -83796308 - L1PA2 LINE L1 -3 6152 5894 378 288 76 17 chr4 118532039 118532157 -83796190 - MIR SINE MIR -123 139 15 196 153 0 34 chr4 118532481 118532540 -83795807 + (TA)n Simple_repeat Simple_repeat 1 57 0 224 200 0 33 chr4 118532561 118532621 -83795726 + (TA)n Simple_repeat Simple_repeat 1 58 0 744 288 79 17 chr4 118532877 118533117 -83795230 - MIR SINE MIR 0 262 8 209 333 25 0 chr4 118533144 118533225 -83795122 + MIR3 SINE MIR 116 198 -10 814 283 27 20 chr4 118538319 118538581 -83789766 + MIR SINE MIR 1 262 0 486 316 26 21 chr4 118539144 118539337 -83789010 - L2 LINE L2 -558 2756 2563 25 0 0 0 chr4 118539972 118539997 -83788350 + AT_rich Low_complexity Low_complexity 1 25 0 661 269 71 0 chr4 118542775 118542972 -83785375 + MIR SINE MIR 3 213 -49 393 223 53 11 chr4 118543020 118543114 -83785233 + L2 LINE L2 3216 3313 0 2237 30 0 11 chr4 118544159 118544456 -83783891 - AluY SINE Alu 0 309 16 233 321 50 57 chr4 118544494 118544634 -83783713 - L2 LINE L2 0 3272 3134 211 200 0 0 chr4 118545027 118545072 -83783275 + CT-rich Low_complexity Low_complexity 2 46 0 352 357 9 0 chr4 118545825 118545937 -83782410 - L2 LINE L2 -9 3304 3192 1826 122 31 6 chr4 118547798 118548117 -83780230 + L1MA3 LINE L1 5974 6300 -5 230 346 88 22 chr4 118548195 118548331 -83780016 - MIR SINE MIR -59 203 59 6557 129 14 12 chr4 118548784 118550183 -83778164 + L1MA3 LINE L1 4905 6305 0 500 217 63 111 chr4 118550606 118550813 -83777534 + MIR SINE MIR 66 262 0 563 350 142 21 chr4 118550836 118551370 -83776977 + L2 LINE L2 1776 2374 -940 1214 62 0 0 chr4 118552331 118552477 -83775870 - AluSg/x SINE Alu -10 302 157 460 294 190 45 chr4 118553863 118554326 -83774021 + L1ME LINE L1 351 880 -5492 265 338 25 5 chr4 118554410 118554608 -83773739 + L1ME LINE L1 1157 1358 -5014 317 238 48 89 chr4 118554653 118554821 -83773526 + L1ME LINE L1 1267 1427 -4957 233 296 93 66 chr4 118554826 118555052 -83773295 + HAL1 LINE L1 1409 1640 -867 222 208 0 0 chr4 118555814 118555867 -83772480 + (TA)n Simple_repeat Simple_repeat 1 53 0 243 293 13 0 chr4 118556020 118556095 -83772252 + L1ME LINE L1 4973 5048 -1334 308 289 115 39 chr4 118556220 118556480 -83771867 + L1ME LINE L1 5198 5477 -905 227 108 0 0 chr4 118556493 118556530 -83771817 + L1ME LINE L1 5490 5526 -881 329 333 122 20 chr4 118556539 118556794 -83771553 + L1ME LINE L1 5541 5821 -577 324 0 0 0 chr4 118556822 118556858 -83771489 + (TG)n Simple_repeat Simple_repeat 1 36 0 681 176 48 0 chr4 118556890 118557015 -83771332 + FLAM_A SINE Alu 2 132 -1 2252 68 0 62 chr4 118557147 118557469 -83770878 + AluY SINE Alu 1 302 -9 3287 277 93 59 chr4 118558311 118559833 -83768514 + Charlie2b DNA MER1_type 9 1620 -1242 1945 198 68 13 chr4 118559833 118560228 -83768119 + MER47B DNA MER2_type 2 418 0 3287 277 93 59 chr4 118560228 118560742 -83767605 + Charlie2b DNA MER1_type 1620 2115 -667 1742 133 6 49 chr4 118560747 118561071 -83767276 + L1P4 LINE L1 5476 5785 -381 341 309 80 28 chr4 118561171 118561633 -83766714 + L1MEc LINE L1 1001 1486 -4910 480 262 0 0 chr4 118561771 118561874 -83766473 - MIR SINE MIR -36 226 124 199 333 14 0 chr4 118561978 118562047 -83766300 + L2 LINE L2 3244 3313 0 286 320 13 0 chr4 118562348 118562426 -83765921 - MIR3 SINE MIR -115 93 15 22 0 0 0 chr4 118563403 118563425 -83764922 + AT_rich Low_complexity Low_complexity 1 22 0 382 215 74 25 chr4 118563966 118564087 -83764260 - L1MB7 LINE L1 -9 6175 6049 670 172 104 37 chr4 118565017 118565143 -83763204 - MER5B DNA MER1_type 0 178 37 1180 227 24 61 chr4 118565143 118565522 -83762825 + MLT1A1 LTR MaLR 1 365 0 670 172 104 37 chr4 118565522 118565558 -83762789 - MER5B DNA MER1_type -141 37 5 183 100 0 0 chr4 118566191 118566221 -83762126 + (T)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr4 118566420 118566455 -83761892 + AT_rich Low_complexity Low_complexity 1 35 0 270 0 0 0 chr4 118566863 118566893 -83761454 + (TG)n Simple_repeat Simple_repeat 2 31 0 1412 230 37 3 chr4 118568768 118569068 -83759279 + Tigger5 DNA MER2_type 1 310 -2013 311 222 25 25 chr4 118569051 118569132 -83759215 + Tigger5 DNA MER2_type 2242 2322 -1 * 952 183 0 32 chr4 118569370 118569556 -83758791 + L1MCb LINE L1 533 712 -5852 2577 176 129 12 chr4 118569557 118570047 -83758300 - MLT2B3 LTR ERVL 0 554 8 1589 217 96 14 chr4 118570054 118570492 -83757855 + L1MCb LINE L1 499 972 -5073 250 298 26 26 chr4 118571017 118571131 -83757216 - MIR SINE MIR -44 218 105 799 274 117 68 chr4 118573760 118574037 -83754310 + MLT1H LTR MaLR 71 380 -169 2259 130 28 0 chr4 118574037 118574391 -83753956 + THE1B LTR MaLR 1 364 0 799 274 117 68 chr4 118574391 118574566 -83753781 + MLT1H LTR MaLR 380 545 -4 244 390 0 0 chr4 118574802 118574902 -83753445 + MLT-int LTR MaLR 427 526 -1209 926 202 64 28 chr4 118575049 118575467 -83752880 - MER76 LTR ERV 0 688 204 1101 187 37 33 chr4 118575470 118575711 -83752636 + MLT1A1 LTR MaLR 124 365 0 22 0 0 0 chr4 118576851 118576873 -83751474 + AT_rich Low_complexity Low_complexity 1 22 0 284 379 33 7 chr4 118576893 118577046 -83751301 - MIR3 SINE MIR -7 201 45 1245 151 29 25 chr4 118579350 118579588 -83748759 + MER50 LTR ERV1 2 240 -494 * 1622 187 0 14 chr4 118579571 118579865 -83748482 + MER50 LTR ERV1 433 722 -12 1813 119 61 24 chr4 118580246 118580539 -83747808 + AluSx SINE Alu 1 304 -8 544 211 60 8 chr4 118580574 118580707 -83747640 + MLT1H1 LTR MaLR 73 212 -337 612 305 85 5 chr4 118580754 118580954 -83747393 + MLT1H1 LTR MaLR 325 540 -15 186 236 0 0 chr4 118581489 118581544 -83746803 + GA-rich Low_complexity Low_complexity 4 58 0 226 326 57 21 chr4 118581580 118581721 -83746626 - MER103 DNA DNA -20 146 1 452 216 34 91 chr4 118581756 118581932 -83746415 - MER112 DNA MER1_type -6 254 89 300 27 0 0 chr4 118581935 118581972 -83746375 + (TG)n Simple_repeat Simple_repeat 2 38 0 24 67 0 0 chr4 118582011 118582056 -83746291 + AT_rich Low_complexity Low_complexity 1 45 0 26 93 0 0 chr4 118582103 118582178 -83746169 + AT_rich Low_complexity Low_complexity 1 75 0 460 227 25 8 chr4 118582438 118582557 -83745790 - MIR SINE MIR -25 237 117 1239 261 62 35 chr4 118583121 118583669 -83744678 + L1MC4a LINE L1 5318 5880 -1928 282 29 0 0 chr4 118584170 118584205 -83744142 + (TTA)n Simple_repeat Simple_repeat 3 37 0 232 299 145 69 chr4 118586022 118586326 -83742021 + L3 LINE CR1 455 781 -796 25 0 0 0 chr4 118586465 118586490 -83741857 + AT_rich Low_complexity Low_complexity 1 25 0 669 293 50 25 chr4 118587154 118587393 -83740954 + MIR SINE MIR 18 262 0 22 35 0 0 chr4 118589060 118589089 -83739258 + AT_rich Low_complexity Low_complexity 1 29 0 685 250 118 38 chr4 118589472 118589870 -83738477 - L2 LINE L2 -2 3311 2581 468 72 0 0 chr4 118590920 118590989 -83737358 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 211 398 29 18 chr4 118590997 118591168 -83737179 - L2 LINE L2 -558 2756 2584 25 31 0 0 chr4 118592832 118592864 -83735483 + AT_rich Low_complexity Low_complexity 1 32 0 26 50 0 0 chr4 118593591 118593631 -83734716 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr4 118594855 118594883 -83733464 + AT_rich Low_complexity Low_complexity 1 28 0 913 125 0 15 chr4 118594965 118595101 -83733246 - FLAM_C SINE Alu -9 134 1 21 36 0 0 chr4 118595279 118595307 -83733040 + AT_rich Low_complexity Low_complexity 1 28 0 335 290 159 37 chr4 118595591 118595805 -83732542 + MIR SINE MIR 20 259 -3 324 340 139 0 chr4 118596095 118596239 -83732108 + MIR3 SINE MIR 17 180 -28 676 128 27 14 chr4 118596491 118596639 -83731708 + GA-rich Low_complexity Low_complexity 3 152 0 180 77 0 0 chr4 118596890 118596916 -83731431 + (CATATA)n Simple_repeat Simple_repeat 2 27 0 * 372 119 0 0 chr4 118596915 118596974 -83731373 + (TG)n Simple_repeat Simple_repeat 2 60 0 23 0 0 0 chr4 118598800 118598823 -83729524 + AT_rich Low_complexity Low_complexity 1 23 0 211 240 0 67 chr4 118598843 118598918 -83729429 - MIR SINE MIR -41 221 152 493 272 43 43 chr4 118598918 118599102 -83729245 - MIR SINE MIR -78 184 1 337 311 87 37 chr4 118599106 118599427 -83728920 - L1M4 LINE L1 -977 5169 4833 510 304 126 17 chr4 118600026 118600256 -83728091 - MIR SINE MIR -2 260 6 468 364 24 47 chr4 118600254 118600592 -83727755 - L2 LINE L2 -93 3179 2850 * 255 347 42 48 chr4 118600880 118601047 -83727300 - MIR SINE MIR -41 221 56 418 255 101 42 chr4 118601871 118602085 -83726262 - MIR SINE MIR -5 257 22 2213 169 60 2 chr4 118602154 118602557 -83725790 - MSTB LTR MaLR 0 426 1 26 30 0 0 chr4 118602971 118603004 -83725343 + AT_rich Low_complexity Low_complexity 1 33 0 2063 153 13 29 chr4 118603059 118603437 -83724910 + THE1C LTR MaLR 4 375 0 758 266 19 19 chr4 118604271 118604485 -83723862 - L1ME LINE L1 -5391 679 466 3802 173 40 73 chr4 118604528 118606198 -83722149 - L1PB4 LINE L1 -40 6116 4511 419 83 28 14 chr4 118606198 118606270 -83722077 - THE1C LTR MaLR 0 428 356 1951 29 4 0 chr4 118606270 118606516 -83721831 - L1PA4 LINE L1 -626 5529 5283 5078 36 0 0 chr4 118606516 118607118 -83721229 + L1PA4 LINE L1 5548 6152 -3 1524 143 54 44 chr4 118607127 118607442 -83720905 - THE1C LTR MaLR -57 318 1 1505 226 7 22 chr4 118607443 118607850 -83720497 - L1PB4 LINE L1 -1632 4514 4114 593 208 96 0 chr4 118607854 118607979 -83720368 - L1ME LINE L1 -5611 459 323 * 1457 132 128 125 chr4 118607977 118608424 -83719923 - L1MC2 LINE L1 -19 6325 5878 3717 68 4 2 chr4 118608436 118608919 -83719428 - L1PA7 LINE L1 -13 6141 5658 1059 87 0 0 chr4 118608919 118609057 -83719290 + L1P LINE L1 4057 4194 -1952 625 310 10 37 chr4 118609056 118609353 -83718994 - L1ME LINE L1 -5738 332 44 * 420 304 26 9 chr4 118609510 118609625 -83718722 + L2 LINE L2 3148 3264 -8 897 198 33 6 chr4 118609647 118609829 -83718518 + L1MA6 LINE L1 6082 6268 -32 197 341 126 30 chr4 118609862 118609997 -83718350 + MIR SINE MIR 5 152 -110 1618 182 16 29 chr4 118610246 118610554 -83717793 + AluJb SINE Alu 1 304 -8 205 250 175 33 chr4 118610842 118610962 -83717385 - MIR SINE MIR -73 189 53 2376 62 3 0 chr4 118610977 118611265 -83717082 + AluY SINE Alu 13 301 -10 21 36 0 0 chr4 118611485 118611513 -83716834 + AT_rich Low_complexity Low_complexity 1 28 0 316 363 44 77 chr4 118614715 118614963 -83713384 - L2 LINE L2 -5 3267 3028 248 402 62 0 chr4 118615146 118615258 -83713089 + L2 LINE L2 3137 3255 -17 262 279 16 0 chr4 118615594 118615655 -83712692 - L2 LINE L2 -2 3270 3209 303 272 108 70 chr4 118615765 118615978 -83712369 - L1MEd LINE L1 -4898 1221 1001 370 329 58 41 chr4 118616120 118616412 -83711935 - L1MEd LINE L1 -5168 951 655 387 263 120 0 chr4 118616444 118616619 -83711728 - L1MEd LINE L1 -5922 197 2 1051 223 37 40 chr4 118617087 118617360 -83710987 + L1MCa LINE L1 28 299 -6127 3021 163 198 11 chr4 118617360 118618264 -83710083 + L1MCa LINE L1 1335 2407 -4019 1878 178 51 6 chr4 118618265 118618620 -83709727 + THE1C LTR MaLR 1 371 -4 9338 133 50 11 chr4 118618624 118620145 -83708202 + THE1C-int LTR MaLR 1 1580 0 1943 179 5 18 chr4 118620145 118620525 -83707822 + THE1C LTR MaLR 1 375 0 9053 254 25 13 chr4 118620530 118623549 -83704798 + L1MCa LINE L1 2409 5465 -961 1242 233 124 42 chr4 118623562 118623966 -83704381 - MLT2B1 LTR ERVL 0 520 84 1258 188 65 65 chr4 118623966 118624259 -83704088 + AluJb SINE Alu 1 293 -19 439 173 18 0 chr4 118624259 118624369 -83703978 + G-rich Low_complexity Low_complexity 2 113 0 454 207 0 0 chr4 118624373 118624460 -83703887 - MLT2B1 LTR ERVL -427 88 2 28681 187 41 30 chr4 118624461 118625366 -83702981 - ERVL-B1 LTR ERVL -7 5757 4864 2388 67 6 19 chr4 118625366 118625681 -83702666 - AluY SINE Alu 0 311 1 28681 187 41 30 chr4 118625681 118626120 -83702227 - ERVL-B1 LTR ERVL -900 4864 4431 1258 244 36 30 chr4 118626120 118626481 -83701866 + MLT1A1 LTR MaLR 1 363 -2 28681 187 41 30 chr4 118626481 118630826 -83697521 - ERVL-B1 LTR ERVL -1333 4431 3 277 150 0 17 chr4 118630829 118630889 -83697458 - MLT2B1 LTR ERVL 0 520 462 376 47 47 47 chr4 118630890 118630975 -83697372 + (TAGA)n Simple_repeat Simple_repeat 3 87 0 695 239 19 7 chr4 118631419 118631574 -83696773 - MLT2B1 LTR ERVL -42 478 322 3024 158 47 8 chr4 118631574 118632193 -83696154 + L1MC1 LINE L1 5690 6332 -1 30387 119 12 58 chr4 118632220 118638675 -83689672 - L1PA7 LINE L1 -3 6151 1 1563 194 0 44 chr4 118638890 118639210 -83689137 - AluJo SINE Alu -6 306 1 2152 145 85 15 chr4 118639744 118640143 -83688204 + MSTA LTR MaLR 1 427 -1 2887 142 30 0 chr4 118640354 118640855 -83687492 - L1MA6 LINE L1 0 7719 7204 588 110 130 0 chr4 118640873 118640973 -83687374 + L1M2 LINE L1 5593 5705 -595 184 98 24 24 chr4 118641230 118641271 -83687076 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 14325 191 26 20 chr4 118641279 118644827 -83683520 - L1MA6 LINE L1 -855 6710 3140 24 0 0 0 chr4 118644994 118645018 -83683329 + AT_rich Low_complexity Low_complexity 1 24 0 672 293 74 4 chr4 118645445 118645715 -83682632 + L1MCb LINE L1 3 291 -5754 1524 216 98 25 chr4 118645733 118645790 -83682557 - MER70A LTR ERVL 0 472 421 381 43 0 0 chr4 118645790 118645837 -83682510 + (CA)n Simple_repeat Simple_repeat 2 48 0 1524 216 98 25 chr4 118645837 118646136 -83682211 - MER70A LTR ERVL -51 421 90 970 194 0 6 chr4 118646135 118646295 -83682052 - MER70A LTR ERVL -313 159 1 * 1323 244 13 35 chr4 118646304 118646754 -83681593 + L1MCb LINE L1 313 897 -5148 7970 178 125 16 chr4 118646756 118648338 -83680009 + MER52A LTR ERV1 1 1755 0 996 216 39 8 chr4 118648340 118648595 -83679752 + L1MCb LINE L1 899 1161 -4884 464 244 107 5 chr4 118648584 118648789 -83679558 + L1MB5 LINE L1 5044 5269 -877 * 43672 42 1 3 chr4 118648798 118654969 -83673378 + L1PA3 LINE L1 9 6172 0 4315 211 10 3 chr4 118655019 118655918 -83672429 + L1MB5 LINE L1 5261 6165 -9 1032 206 82 57 chr4 118655916 118656801 -83671546 + L1MCb LINE L1 1171 2284 -4280 * 296 292 0 62 chr4 118658370 118658514 -83669833 - HAL1 LINE L1 -4 2503 2369 1388 295 135 52 chr4 118658606 118660624 -83667723 - HAL1 LINE L1 -283 2224 23 301 229 0 24 chr4 118662500 118662583 -83665764 + (TA)n Simple_repeat Simple_repeat 2 82 0 201 121 0 0 chr4 118662583 118662616 -83665731 + (TG)n Simple_repeat Simple_repeat 2 34 0 11755 193 44 11 chr4 118663272 118663356 -83664991 + L1MA1 LINE L1 16 96 -7469 252 0 0 0 chr4 118663356 118663384 -83664963 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 11755 193 44 11 chr4 118663384 118663664 -83664683 + L1MA1 LINE L1 96 365 -7200 2753 16 0 0 chr4 118663664 118663967 -83664380 - AluYa5 SINE Alu -8 303 1 11755 193 44 11 chr4 118663967 118665868 -83662479 + L1MA1 LINE L1 365 2356 -5209 1321 111 6 0 chr4 118665868 118666048 -83662299 - AluSg/x SINE Alu -14 298 118 286 82 143 0 chr4 118666049 118666098 -83662249 + L1MA1 LINE L1 3363 3418 -4147 1695 140 20 0 chr4 118666115 118666443 -83661904 + L1MA1 LINE L1 3383 3731 -3834 1205 97 0 0 chr4 118666462 118666617 -83661730 + AluY SINE Alu 151 305 -6 13167 159 47 35 chr4 118666618 118668938 -83659409 + L1MA1 LINE L1 3741 6137 -1584 2176 79 7 0 chr4 118668938 118669276 -83659071 - AluY SINE Alu 0 340 1 13167 159 47 35 chr4 118669276 118670876 -83657471 + L1MA1 LINE L1 6137 7715 -6 307 108 0 46 chr4 118670902 118670967 -83657380 - L1PA16 LINE L1 0 6166 6105 398 291 74 7 chr4 118672290 118672438 -83655909 + MIR SINE MIR 102 259 -3 909 199 86 152 chr4 118672713 118673134 -83655213 - MLT1A1 LTR MaLR 0 365 4 644 257 75 9 chr4 118673203 118673482 -83654865 - MLT1I LTR MaLR -10 399 70 216 390 35 14 chr4 118673683 118673824 -83654523 + MIR3 SINE MIR 54 197 -11 1805 194 101 38 chr4 118673973 118674448 -83653899 + MLT1D LTR MaLR 1 505 0 22 35 0 0 chr4 118675138 118675167 -83653180 + AT_rich Low_complexity Low_complexity 1 29 0 2082 191 38 32 chr4 118675226 118675728 -83652619 - MLT1D LTR MaLR 0 505 1 409 389 43 5 chr4 118676120 118676305 -83652042 - L2 LINE L2 -1 3271 3080 561 281 94 18 chr4 118676965 118677293 -83651054 - L1ME4a LINE L1 -161 5960 5608 2742 23 0 0 chr4 118677428 118677734 -83650613 - AluY SINE Alu -5 306 1 474 262 26 67 chr4 118677781 118677865 -83650482 + MLT1E LTR MaLR 14 100 -467 839 229 62 119 chr4 118677865 118678285 -83650062 - MSTD LTR MaLR 0 396 1 474 262 26 67 chr4 118678285 118678402 -83649945 + MLT1E LTR MaLR 100 212 -355 213 162 44 15 chr4 118678404 118678472 -83649875 + CT-rich Low_complexity Low_complexity 4 73 0 325 262 127 53 chr4 118678624 118678945 -83649402 - L1ME4a LINE L1 -813 5333 5114 309 290 91 6 chr4 118679032 118679208 -83649139 - L1ME4a LINE L1 -1833 4313 4123 1114 134 0 0 chr4 118679806 118679970 -83648377 + L1P4 LINE L1 5435 5598 -568 * 2732 130 5 0 chr4 118679964 118680386 -83647961 + L1PA16 LINE L1 5514 5937 -229 4094 15 8 2 chr4 118680386 118680864 -83647483 + L1PA2 LINE L1 5671 6151 -4 1441 159 4 0 chr4 118680864 118681093 -83647254 + L1PA16 LINE L1 5925 6157 -9 324 277 39 40 chr4 118681608 118681851 -83646496 + MER41B LTR ERV1 50 425 -210 333 0 0 0 chr4 118682003 118682040 -83646307 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 6280 57 3 0 chr4 118682040 118682818 -83645529 - L1PA7 LINE L1 -13 6141 5362 1923 92 92 0 chr4 118683632 118683903 -83644444 - AluSg1 SINE Alu -13 296 1 574 335 84 31 chr4 118684382 118684704 -83643643 + L2 LINE L2 2975 3313 0 1700 119 0 4 chr4 118684733 118684969 -83643378 + AluSg/x SINE Alu 70 304 -6 423 100 25 12 chr4 118687341 118687421 -83640926 + (GGAA)n Simple_repeat Simple_repeat 3 83 0 23 54 0 0 chr4 118688946 118688983 -83639364 + AT_rich Low_complexity Low_complexity 1 37 0 183 204 0 0 chr4 118689764 118689808 -83638539 + (ATTTG)n Simple_repeat Simple_repeat 2 45 0 617 267 147 22 chr4 118690186 118690650 -83637697 - L1M4 LINE L1 -1316 4830 4309 440 330 58 19 chr4 118690691 118690952 -83637395 - L1M4 LINE L1 -1953 4193 3923 339 291 61 20 chr4 118690953 118691101 -83637246 - L1M4 LINE L1 -2258 3888 3735 657 94 0 0 chr4 118691222 118691307 -83637040 + MSTB1 LTR MaLR 1 85 -347 1015 223 55 92 chr4 118691308 118691711 -83636636 - L1MC3 LINE L1 -1202 6583 6196 * 2940 239 29 19 chr4 118691701 118692632 -83635715 - L1M4 LINE L1 -2216 3930 2991 856 191 180 94 chr4 118692659 118692989 -83635358 - MSTD LTR MaLR -8 388 1 275 292 0 14 chr4 118693152 118693224 -83635123 - L1MDb LINE L1 -6118 291 221 1899 173 126 8 chr4 118693612 118693994 -83634353 + MSTA LTR MaLR 1 427 -1 29 0 0 0 chr4 118694281 118694310 -83634037 + AT_rich Low_complexity Low_complexity 1 29 0 294 328 26 21 chr4 118694398 118694587 -83633760 - L1MC3 LINE L1 -1907 5901 5712 1219 234 56 25 chr4 118696489 118696878 -83631469 + L1ME2 LINE L1 5770 6178 0 25 0 0 0 chr4 118696966 118696991 -83631356 + AT_rich Low_complexity Low_complexity 1 25 0 903 208 98 98 chr4 118697382 118697527 -83630820 - Zaphod DNA AcHobo -9 4022 3878 2222 82 0 54 chr4 118697527 118697858 -83630489 + AluSq SINE Alu 1 313 0 903 208 98 98 chr4 118697858 118698140 -83630207 - Zaphod DNA AcHobo -152 3879 3595 * 1696 245 124 41 chr4 118698138 118698337 -83630010 - Zaphod DNA AcHobo -3041 990 809 2208 93 7 3 chr4 118698337 118698637 -83629710 - AluSq SINE Alu -12 301 1 1696 245 124 41 chr4 118698637 118699285 -83629062 - Zaphod DNA AcHobo -3222 809 73 27 29 0 0 chr4 118699323 118699357 -83628990 + AT_rich Low_complexity Low_complexity 1 34 0 243 196 22 71 chr4 118699364 118699593 -83628754 + (TATAA)n Simple_repeat Simple_repeat 1 217 0 306 297 33 22 chr4 118699623 118699714 -83628633 - Zaphod DNA AcHobo -3939 92 1 4672 192 79 23 chr4 118699960 118701313 -83627034 - L1MC1 LINE L1 -1 6612 5175 18629 72 6 0 chr4 118701316 118703736 -83624611 + L1P LINE L1 1 2435 -3711 27488 38 2 0 chr4 118703836 118708015 -83620332 + L1PA4 LINE L1 1968 6155 0 6227 243 40 15 chr4 118708020 118709092 -83619255 - L1MC1 LINE L1 -1241 5185 4142 2124 132 16 31 chr4 118709092 118709263 -83619084 - L1MA3 LINE L1 0 6305 6133 1968 163 0 0 chr4 118709263 118709563 -83618784 - AluJb SINE Alu -11 301 2 2124 132 16 31 chr4 118709563 118709778 -83618569 - L1MA3 LINE L1 -172 6133 5925 6227 243 40 15 chr4 118709778 118710328 -83618019 - L1MC1 LINE L1 -2284 4142 3608 2093 120 7 16 chr4 118710328 118710636 -83617711 - AluSx SINE Alu -7 305 1 6227 243 40 15 chr4 118710636 118711514 -83616833 - L1MC1 LINE L1 -2818 3608 2615 2035 148 0 0 chr4 118711514 118711818 -83616529 - AluSx SINE Alu -8 304 1 6227 243 40 15 chr4 118711818 118712049 -83616298 - L1MC1 LINE L1 -3811 2615 2391 7244 158 78 69 chr4 118712059 118714245 -83614102 - L1MC1 LINE L1 -4085 2341 32 1811 89 4 0 chr4 118714245 118714492 -83613855 - L1PB1 LINE L1 0 6151 5904 7244 158 78 69 chr4 118714492 118714520 -83613827 - L1MC1 LINE L1 -6394 32 6 3144 166 43 12 chr4 118715043 118715626 -83612721 + MER7C DNA MER2_type 1 601 -1 655 216 23 50 chr4 118716322 118716499 -83611848 - MER5B DNA MER1_type 0 178 12 864 173 0 12 chr4 118716719 118716892 -83611455 - L1MA7 LINE L1 0 6291 6121 212 83 0 28 chr4 118716959 118716995 -83611352 + (ATG)n Simple_repeat Simple_repeat 2 36 0 2225 161 33 23 chr4 118717063 118717491 -83610856 - Tigger2a DNA MER2_type -1 433 2 387 0 0 0 chr4 118717493 118717536 -83610811 + (CA)n Simple_repeat Simple_repeat 2 44 0 27 29 0 0 chr4 118717768 118717802 -83610545 + AT_rich Low_complexity Low_complexity 1 34 0 1607 101 0 5 chr4 118718591 118718799 -83609548 + AluSp SINE Alu 25 231 -82 1851 217 64 66 chr4 118719058 118719574 -83608773 + MLT2B1 LTR ERVL 6 520 0 509 284 101 68 chr4 118719688 118720054 -83608293 - MLT1J1 LTR MaLR 0 446 69 288 225 178 8 chr4 118721788 118721917 -83606430 - L1MA10 LINE L1 -4 6330 6180 25782 133 14 24 chr4 118721960 118728415 -83599932 - L1PA8A LINE L1 0 6446 3 5966 119 11 5 chr4 118728827 118730582 -83597765 - L1PA15 LINE L1 -2 6163 4404 982 290 46 13 chr4 118731150 118731453 -83596894 + MLT1I LTR MaLR 1 313 -96 291 146 0 0 chr4 118731891 118731946 -83596401 + (CA)n Simple_repeat Simple_repeat 2 56 0 1892 140 38 0 chr4 118732477 118732770 -83595577 + AluSx SINE Alu 1 304 -8 250 256 35 23 chr4 118733049 118733135 -83595212 + MER5A DNA MER1_type 101 187 -2 694 260 73 41 chr4 118733339 118733558 -83594789 - MIR SINE MIR -36 226 1 659 244 19 19 chr4 118733702 118733858 -83594489 + MER5B DNA MER1_type 1 156 -22 21 0 0 0 chr4 118733887 118733908 -83594439 + AT_rich Low_complexity Low_complexity 1 21 0 252 250 80 60 chr4 118736314 118736414 -83591933 - MIR SINE MIR -90 172 71 207 0 0 0 chr4 118737278 118737301 -83591046 + (A)n Simple_repeat Simple_repeat 1 23 0 582 259 98 15 chr4 118739332 118739537 -83588810 + MIR SINE MIR 41 262 0 376 303 65 106 chr4 118739810 118740387 -83587960 - L2 LINE L2 -648 2666 2112 2095 123 3 0 chr4 118740387 118740679 -83587668 + AluSg SINE Alu 1 293 -17 376 303 65 106 chr4 118740679 118740696 -83587651 - L2 LINE L2 -1202 2112 2096 358 336 115 72 chr4 118741303 118741678 -83586669 + L2 LINE L2 2877 3267 -5 2486 60 0 22 chr4 118741973 118742287 -83586060 + AluY SINE Alu 1 307 -4 3460 24 3 0 chr4 118742323 118742900 -83585447 - L1PA2 LINE L1 -499 5656 5077 4606 15 0 0 chr4 118742900 118743419 -83584928 + L1PA2 LINE L1 5630 6154 -1 22 0 0 0 chr4 118743447 118743469 -83584878 + AT_rich Low_complexity Low_complexity 1 22 0 1043 214 0 11 chr4 118744125 118744312 -83584035 + AluJo SINE Alu 1 185 -127 14545 162 41 9 chr4 118744523 118749383 -83578964 - L1MA3 LINE L1 -2 7722 2697 2378 110 8 8 chr4 118749383 118749737 -83578610 - THE1A LTR MaLR 0 355 2 11475 104 4 1 chr4 118749738 118751310 -83577037 - THE1A-int LTR MaLR 0 1580 4 1755 140 11 11 chr4 118751385 118751671 -83576676 - THE1A LTR MaLR -69 286 1 2337 65 0 33 chr4 118751688 118751995 -83576352 - AluY SINE Alu -14 297 1 16926 154 9 5 chr4 118751995 118752946 -83575401 - L1MA3 LINE L1 -4864 2701 1755 279 0 0 0 chr4 118752946 118752977 -83575370 + (TG)n Simple_repeat Simple_repeat 2 32 0 16926 154 9 5 chr4 118752977 118754705 -83573642 - L1MA3 LINE L1 -5810 1755 12 26 0 0 0 chr4 118754706 118754732 -83573615 + AT_rich Low_complexity Low_complexity 1 26 0 21 100 0 0 chr4 118755055 118755125 -83573222 + AT_rich Low_complexity Low_complexity 1 70 0 230 308 47 0 chr4 118755361 118755468 -83572879 - HAL1 LINE L1 -698 1809 1698 331 303 56 7 chr4 118755478 118755620 -83572727 - HERVL LTR ERVL -3736 1918 1770 250 137 68 0 chr4 118755875 118755948 -83572399 + (TA)n Simple_repeat Simple_repeat 1 78 0 204 324 132 11 chr4 118756894 118757076 -83571271 - L2 LINE L2 -4 3309 3106 1992 118 7 17 chr4 118757350 118757669 -83570678 - AluSq SINE Alu 0 313 1 236 341 76 47 chr4 118757704 118757915 -83570432 + L2 LINE L2 2283 2499 -815 218 302 0 0 chr4 118761864 118761927 -83566420 - L2 LINE L2 0 3313 3251 555 299 71 19 chr4 118763481 118763692 -83564655 + L3 LINE CR1 1065 1286 -291 21 0 0 0 chr4 118763764 118763785 -83564562 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr4 118764895 118764918 -83563429 + (CA)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chr4 118767946 118767976 -83560371 + AT_rich Low_complexity Low_complexity 1 30 0 611 304 0 0 chr4 118769242 118769390 -83558957 + MIR SINE MIR 6 153 -109 1049 237 23 8 chr4 118769528 118769785 -83558562 - MIR SINE MIR 0 262 2 276 264 85 63 chr4 118771029 118771195 -83557152 - MLT1H1 LTR MaLR 0 555 385 360 278 43 62 chr4 118771360 118771522 -83556825 - MLT1H1 LTR MaLR -389 166 8 259 237 25 51 chr4 118771529 118771647 -83556700 - MLT1H1-int LTR MaLR -15 1356 1242 531 222 0 34 chr4 118772304 118772421 -83555926 + MER58C DNA MER1_type 1 113 -102 4166 208 16 35 chr4 118772423 118774121 -83554226 + L1MB5 LINE L1 4449 6115 -59 402 241 0 0 chr4 118774156 118774243 -83554104 + MER58C DNA MER1_type 108 194 -21 432 0 0 0 chr4 118774670 118774718 -83553629 + (TG)n Simple_repeat Simple_repeat 2 49 0 609 270 30 102 chr4 118774794 118775200 -83553147 - MLT1H1 LTR MaLR -184 371 1 289 358 51 37 chr4 118775349 118775449 -83552898 - L2 LINE L2 -191 3081 2984 2033 131 13 66 chr4 118775449 118775845 -83552502 + THE1C LTR MaLR 1 375 0 289 358 51 37 chr4 118775845 118775959 -83552388 - L2 LINE L2 -288 2984 2864 317 229 38 48 chr4 118776134 118776239 -83552108 - MER103 DNA DNA -19 147 44 233 29 29 0 chr4 118776676 118776710 -83551637 + (TA)n Simple_repeat Simple_repeat 2 36 0 1649 158 32 7 chr4 118782819 118783124 -83545223 - AluJb SINE Alu 0 332 21 237 282 14 0 chr4 118785025 118785096 -83543251 - MIR3 SINE MIR -4 204 133 984 210 170 18 chr4 118787655 118788209 -83540138 + LTR50 LTR ERVL 1 770 -25 2607 201 9 9 chr4 118788245 118788500 -83539847 - L1MB7 LINE L1 -12 6172 5918 1319 238 65 11 chr4 118788500 118788870 -83539477 + MLT1B LTR MaLR 1 390 0 2607 201 9 9 chr4 118788870 118789152 -83539195 - L1MB7 LINE L1 -265 5919 5635 379 356 38 12 chr4 118789891 118790051 -83538296 + MIR3 SINE MIR 42 205 -3 248 221 76 48 chr4 118790682 118790827 -83537520 + Charlie7 DNA MER1_type 2458 2606 -6 242 193 34 34 chr4 118790938 118791026 -83537321 + (CAGAG)n Simple_repeat Simple_repeat 1 88 0 1824 145 7 3 chr4 118791387 118791676 -83536671 - AluJb SINE Alu -20 292 3 937 172 38 33 chr4 118792566 118792853 -83535494 - MER1B DNA MER1_type -1 338 1 22 0 0 0 chr4 118793085 118793107 -83535240 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 118793920 118793941 -83534406 + AT_rich Low_complexity Low_complexity 1 21 0 4932 301 76 34 chr4 118794100 118796459 -83531888 - L2 LINE L2 -553 2761 303 524 230 56 15 chr4 118796459 118796659 -83531688 + MER58 DNA MER1_type 1 2420 0 461 289 37 42 chr4 118796691 118796881 -83531466 - L2 LINE L2 -3087 227 39 347 321 57 7 chr4 118797043 118797183 -83531164 - MIR SINE MIR -69 193 47 584 332 103 15 chr4 118798456 118798727 -83529620 - MLT1I LTR MaLR -7 402 108 1756 88 11 4 chr4 118801496 118801757 -83526590 - L1MA2 LINE L1 0 6304 6042 713 271 18 45 chr4 118801844 118802065 -83526282 + MIR SINE MIR 6 220 -42 374 257 18 9 chr4 118802178 118802287 -83526060 + MIR SINE MIR 150 259 -3 30 27 0 0 chr4 118804491 118804528 -83523819 + AT_rich Low_complexity Low_complexity 1 37 0 1165 204 35 9 chr4 118804663 118804889 -83523458 + AluJo SINE Alu 1 232 -80 200 219 62 0 chr4 118805039 118805103 -83523244 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 256 344 65 9 chr4 118805188 118805349 -83522998 - MER5B DNA MER1_type -1 188 8 2266 91 0 3 chr4 118805370 118805666 -83522681 - AluSc SINE Alu -14 295 1 1814 159 3 0 chr4 118805855 118806138 -83522209 + AluSx SINE Alu 3 286 -26 255 79 0 0 chr4 118806138 118806176 -83522171 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 200 227 0 0 chr4 118809616 118809660 -83518687 + T-rich Low_complexity Low_complexity 1 44 0 26 30 0 0 chr4 118810584 118810617 -83517730 + AT_rich Low_complexity Low_complexity 1 33 0 282 175 16 0 chr4 118812536 118812599 -83515748 + L1MA9 LINE L1 5963 6026 -286 405 129 0 0 chr4 118812743 118812813 -83515534 + (TA)n Simple_repeat Simple_repeat 1 70 0 23 33 0 0 chr4 118814433 118814463 -83513884 + AT_rich Low_complexity Low_complexity 1 30 0 544 308 40 5 chr4 118816250 118816448 -83511899 + L2 LINE L2 3098 3302 -11 3020 291 129 15 chr4 118816734 118817571 -83510776 + L2 LINE L2 1519 2259 -1054 222 37 0 0 chr4 118817571 118817598 -83510749 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 3020 291 129 15 chr4 118817598 118818116 -83510231 + L2 LINE L2 2259 3025 -288 421 287 17 0 chr4 118818125 118818240 -83510107 + L2 LINE L2 3175 3291 -22 345 225 0 0 chr4 118818245 118818334 -83510013 + GA-rich Low_complexity Low_complexity 1 89 0 26 30 0 0 chr4 118819550 118819583 -83508764 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr4 118819747 118819774 -83508573 + AT_rich Low_complexity Low_complexity 1 27 0 302 285 51 109 chr4 118820352 118820608 -83507739 - L2 LINE L2 0 3313 3073 575 333 113 20 chr4 118820753 118821312 -83507035 - L2 LINE L2 -1235 2079 1469 400 331 18 18 chr4 118821788 118821951 -83506396 - MER5A DNA MER1_type -1 188 26 349 285 225 13 chr4 118822668 118822819 -83505528 + MER5A DNA MER1_type 7 189 0 181 402 0 9 chr4 118822824 118822931 -83505416 + L2 LINE L2 1837 1942 -1372 261 0 0 0 chr4 118823160 118823189 -83505158 + (CA)n Simple_repeat Simple_repeat 2 30 0 338 252 47 79 chr4 118823423 118823550 -83504797 + MLT1F LTR MaLR 62 184 -358 21 36 0 0 chr4 118823995 118824023 -83504324 + AT_rich Low_complexity Low_complexity 1 28 0 249 345 59 8 chr4 118824297 118824416 -83503931 + MIR SINE MIR 32 156 -106 300 254 0 0 chr4 118824438 118824493 -83503854 - L2 LINE L2 -63 3209 3155 187 278 0 0 chr4 118824525 118824561 -83503786 + L2 LINE L2 3211 3246 -26 388 230 50 20 chr4 118824902 118825002 -83503345 + MIR SINE MIR 86 188 -74 21 36 0 0 chr4 118826303 118826331 -83502016 + AT_rich Low_complexity Low_complexity 1 28 0 2040 82 31 20 chr4 118826689 118826981 -83501366 - AluSq SINE Alu -10 303 9 459 227 198 6 chr4 118828611 118828758 -83499589 - MER5A DNA MER1_type -6 183 4 185 341 0 24 chr4 118829312 118829397 -83498950 - MIR SINE MIR 0 262 180 247 450 52 19 chr4 118829667 118830031 -83498316 - L2 LINE L2 -337 2977 2602 1329 134 20 0 chr4 118830031 118830232 -83498115 + AluSg/x SINE Alu 89 293 -17 296 366 122 8 chr4 118830472 118830841 -83497506 - L2 LINE L2 -1146 2168 1758 896 230 237 10 chr4 118831667 118832071 -83496276 + LTR50 LTR ERVL 7 580 -215 21 36 0 0 chr4 118832155 118832183 -83496164 + AT_rich Low_complexity Low_complexity 1 28 0 192 295 9 67 chr4 118832230 118832335 -83496012 + L2 LINE L2 1672 1770 -1544 755 300 58 17 chr4 118832659 118833149 -83495198 - L1ME LINE L1 -565 5597 5087 1335 167 3 75 chr4 118833177 118833470 -83494877 + AluJo SINE Alu 41 312 0 530 311 216 5 chr4 118833508 118833888 -83494459 - L1ME LINE L1 -1085 5061 4602 239 281 9 61 chr4 118833904 118834018 -83494329 - MIR SINE MIR -46 216 109 189 267 67 17 chr4 118834540 118834600 -83493747 + L3b LINE CR1 1417 1479 -104 27 62 0 0 chr4 118834819 118834867 -83493480 + AT_rich Low_complexity Low_complexity 1 48 0 25 0 0 0 chr4 118834893 118834918 -83493429 + AT_rich Low_complexity Low_complexity 1 25 0 29 60 0 0 chr4 118835622 118835672 -83492675 + AT_rich Low_complexity Low_complexity 1 50 0 30 77 0 0 chr4 118838143 118838208 -83490139 + AT_rich Low_complexity Low_complexity 1 65 0 21 0 0 0 chr4 118840803 118840824 -83487523 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 118842430 118842457 -83485890 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr4 118843387 118843416 -83484931 + AT_rich Low_complexity Low_complexity 1 29 0 228 303 20 10 chr4 118847450 118847549 -83480798 + (TATATG)n Simple_repeat Simple_repeat 3 102 0 * 254 268 28 0 chr4 118847493 118847576 -83480771 + (CATA)n Simple_repeat Simple_repeat 1 85 0 200 267 44 0 chr4 118847796 118847841 -83480506 - L2 LINE L2 -13 3259 3213 228 35 0 0 chr4 118847973 118848002 -83480345 + (TTG)n Simple_repeat Simple_repeat 2 30 0 28 0 0 0 chr4 118848068 118848096 -83480251 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr4 118850091 118850122 -83478225 + AT_rich Low_complexity Low_complexity 1 31 0 1936 75 0 0 chr4 118851034 118851287 -83477060 + L1PA13 LINE L1 5895 6147 -16 27 49 0 0 chr4 118851288 118851329 -83477018 + AT_rich Low_complexity Low_complexity 1 41 0 320 148 20 30 chr4 118851888 118851989 -83476358 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 22 99 0 0 chr4 118853250 118853321 -83475026 + AT_rich Low_complexity Low_complexity 1 71 0 1519 214 114 0 chr4 118853827 118854135 -83474212 + Tigger7 DNA MER2_type 2 344 -2143 805 199 14 0 chr4 118854130 118854276 -83474071 + Tigger7 DNA MER2_type 2339 2486 -1 * 452 262 27 40 chr4 118854867 118855016 -83473331 - MIR3 SINE MIR -6 202 56 271 233 95 60 chr4 118855022 118855138 -83473209 - MIR SINE MIR 0 262 143 26 0 0 0 chr4 118855385 118855411 -83472936 + AT_rich Low_complexity Low_complexity 1 26 0 29 28 0 0 chr4 118856698 118856734 -83471613 + AT_rich Low_complexity Low_complexity 1 36 0 588 304 105 21 chr4 118859596 118859882 -83468465 + MLT1I LTR MaLR 98 407 -2 231 291 38 13 chr4 118859891 118859970 -83468377 - MIR SINE MIR -94 168 88 507 192 30 114 chr4 118860006 118860173 -83468174 + MIR SINE MIR 110 262 0 311 254 59 76 chr4 118860195 118860267 -83468080 + MIR SINE MIR 97 168 -94 4609 167 42 2 chr4 118860267 118861099 -83467248 + MER6 DNA MER2_type 1 865 0 311 254 59 76 chr4 118861099 118861144 -83467203 + MIR SINE MIR 168 212 -50 1049 196 10 0 chr4 118861373 118861577 -83466770 + MER3 DNA MER1_type 3 208 -1 747 320 114 41 chr4 118861968 118862672 -83465675 + L2 LINE L2 2558 3312 -1 376 349 7 7 chr4 118863366 118863518 -83464829 - L1ME LINE L1 -473 5648 5497 22 35 0 0 chr4 118863806 118863835 -83464512 + AT_rich Low_complexity Low_complexity 1 29 0 387 0 0 0 chr4 118864166 118864209 -83464138 + (CA)n Simple_repeat Simple_repeat 2 44 0 204 214 100 14 chr4 118864807 118864877 -83463470 - MER5C DNA MER1_type -130 194 119 254 309 45 55 chr4 118865088 118865198 -83463149 + MIR3 SINE MIR 91 199 -9 22 56 0 0 chr4 118865401 118865437 -83462910 + AT_rich Low_complexity Low_complexity 1 36 0 884 257 152 50 chr4 118865481 118866107 -83462240 - HAL1 LINE L1 -74 2433 1744 271 308 106 41 chr4 118866669 118866844 -83461503 - MIR3 SINE MIR -43 165 32 180 77 0 0 chr4 118866858 118866884 -83461463 + (TTA)n Simple_repeat Simple_repeat 2 27 0 237 263 11 32 chr4 118867199 118867294 -83461053 - L1ME LINE L1 -285 5836 5744 2070 106 17 20 chr4 118867301 118867603 -83460744 - AluSg SINE Alu -9 301 1 491 283 128 6 chr4 118867900 118868080 -83460267 + MIR SINE MIR 48 249 -13 214 64 0 85 chr4 118869308 118869355 -83458992 + (GAAA)n Simple_repeat Simple_repeat 3 45 0 1060 123 6 6 chr4 118870161 118870340 -83458007 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 333 68 0 0 chr4 118870340 118870384 -83457963 + (GGGA)n Simple_repeat Simple_repeat 1 44 0 521 269 34 0 chr4 118870409 118870558 -83457789 + L2 LINE L2 2526 2679 -635 1048 232 13 9 chr4 118870558 118870782 -83457565 - MER45C DNA AcHobo 0 953 729 184 208 56 97 chr4 118871427 118871499 -83456848 + L2 LINE L2 3244 3312 -1 498 306 39 68 chr4 118872089 118872396 -83455951 - MER102a DNA MER1_type -6 324 27 240 35 0 0 chr4 118872575 118872604 -83455743 + (TTTTC)n Simple_repeat Simple_repeat 4 32 0 224 128 0 21 chr4 118872621 118872668 -83455679 + (TTTC)n Simple_repeat Simple_repeat 2 47 0 1075 16 0 0 chr4 118874112 118874237 -83454110 - L1P LINE L1 -3514 2632 2508 215 286 14 14 chr4 118876192 118876262 -83452085 + MIR3 SINE MIR 15 84 -124 27 49 0 0 chr4 118876442 118876483 -83451864 + AT_rich Low_complexity Low_complexity 1 41 0 540 196 0 0 chr4 118876528 118876625 -83451722 + AluJ/FLAM SINE Alu 1 97 -215 200 273 61 0 chr4 118876770 118876836 -83451511 - MIR SINE MIR -116 146 77 1136 321 76 57 chr4 118876851 118877835 -83450512 - L2 LINE L2 0 3272 2292 191 237 0 34 chr4 118879133 118879192 -83449155 + MIR SINE MIR 84 140 -122 2103 128 128 13 chr4 118881827 118882209 -83446138 - MSTA LTR MaLR -2 426 1 743 277 65 53 chr4 118882622 118882961 -83445386 + MLT1H LTR MaLR 103 445 -104 277 182 76 0 chr4 118883058 118883124 -83445223 + MLT1H LTR MaLR 472 542 0 759 280 154 12 chr4 118883370 118883773 -83444574 + MLT1C LTR MaLR 6 465 -2 374 234 35 5 chr4 118884042 118884159 -83444188 + MLT1E LTR MaLR 1 99 -368 279 383 19 0 chr4 118884706 118884813 -83443534 - MIR SINE MIR -152 110 2 21 36 0 0 chr4 118885140 118885168 -83443179 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 118885249 118885277 -83443070 + AT_rich Low_complexity Low_complexity 1 28 0 241 214 18 18 chr4 118885696 118885752 -83442595 + MIR3 SINE MIR 100 155 -53 833 285 80 69 chr4 118886297 118887021 -83441326 + L2 LINE L2 2600 3313 0 282 29 0 0 chr4 118888677 118888712 -83439635 + (CA)n Simple_repeat Simple_repeat 1 35 0 26 0 0 0 chr4 118889275 118889301 -83439046 + AT_rich Low_complexity Low_complexity 1 26 0 32 67 0 0 chr4 118889868 118889928 -83438419 + AT_rich Low_complexity Low_complexity 1 60 0 208 267 151 12 chr4 118890049 118890135 -83438212 - MIR SINE MIR -12 250 153 22 56 0 0 chr4 118890353 118890389 -83437958 + AT_rich Low_complexity Low_complexity 1 36 0 1189 235 77 22 chr4 118890898 118891221 -83437126 - Charlie1a DNA MER1_type -1075 380 40 1353 200 70 46 chr4 118891243 118891613 -83436734 + Charlie1a DNA MER1_type 409 787 -668 944 230 165 47 chr4 118891615 118891722 -83436625 + MLT1E LTR MaLR 212 305 -288 206 61 0 30 chr4 118891722 118891755 -83436592 + (CAA)n Simple_repeat Simple_repeat 2 33 0 944 230 165 47 chr4 118891755 118891986 -83436361 + MLT1E LTR MaLR 305 590 -3 259 125 0 42 chr4 118892027 118892075 -83436272 + MIR SINE MIR 211 256 -6 384 241 0 0 chr4 118892565 118892681 -83435666 + GA-rich Low_complexity Low_complexity 1 116 0 24 0 0 0 chr4 118893030 118893054 -83435293 + AT_rich Low_complexity Low_complexity 1 24 0 572 215 177 0 chr4 118893403 118893561 -83434786 - MIR SINE MIR -21 241 56 942 259 4 26 chr4 118894388 118894620 -83433727 + MIR SINE MIR 15 241 -21 451 253 82 57 chr4 118894672 118894914 -83433433 + MIR SINE MIR 18 262 0 2274 101 0 3 chr4 118894981 118895279 -83433068 - AluSx SINE Alu -15 297 1 231 292 15 0 chr4 118895518 118895583 -83432764 + MLT1E3 LTR MaLR 423 488 -136 222 339 54 18 chr4 118895688 118895800 -83432547 + L2 LINE L2 3180 3295 -18 224 204 74 19 chr4 118896672 118896726 -83431621 + MIR SINE MIR 5 61 -201 434 285 230 15 chr4 118896741 118896941 -83431406 + MIR SINE MIR 20 262 0 21 57 0 0 chr4 118898593 118898628 -83429719 + AT_rich Low_complexity Low_complexity 1 35 0 283 351 101 10 chr4 118900223 118900431 -83427916 - MIR SINE MIR -7 255 29 859 253 94 0 chr4 118901290 118901523 -83426824 + MIR SINE MIR 7 261 -1 443 284 51 51 chr4 118903943 118904140 -83424207 - MIR SINE MIR -46 216 20 182 353 35 29 chr4 118904578 118904748 -83423599 - L2 LINE L2 -188 3084 2914 489 189 47 28 chr4 118904768 118904874 -83423473 + MER5B DNA MER1_type 3 110 -68 1877 172 3 0 chr4 118905608 118905911 -83422436 - AluJo SINE Alu -8 304 1 2142 73 30 33 chr4 118905925 118906228 -83422119 - AluY SINE Alu -9 302 1 1364 219 10 70 chr4 118906528 118906911 -83421436 + MLT1A1 LTR MaLR 1 360 -5 23 33 0 0 chr4 118907687 118907717 -83420630 + AT_rich Low_complexity Low_complexity 1 30 0 360 253 11 11 chr4 118908002 118908097 -83420250 - MIR SINE MIR -89 173 79 1491 152 17 74 chr4 118908931 118909227 -83419120 + AluJo SINE Alu 1 279 -33 813 160 0 0 chr4 118909237 118909401 -83418946 + AluSg/x SINE Alu 164 327 0 6679 53 8 0 chr4 118909406 118910858 -83417489 - L1PA8 LINE L1 -9 6163 4681 282 157 39 0 chr4 118910887 118910938 -83417409 - MER66B LTR ERV1 -146 340 288 366 213 53 0 chr4 118910970 118911045 -83417302 - MER5A DNA MER1_type -110 79 1 323 348 108 27 chr4 118911045 118911376 -83416971 + L2 LINE L2 2127 2484 -830 738 243 45 50 chr4 118912195 118912417 -83415930 + MIR SINE MIR 1 221 -41 424 276 111 85 chr4 118912946 118913323 -83415024 - MLT1L LTR MaLR -223 392 6 706 237 39 77 chr4 118914506 118914818 -83413529 + LTR37A LTR ERV1 115 414 -12 189 0 0 0 chr4 118915211 118915232 -83413115 + (TA)n Simple_repeat Simple_repeat 1 21 0 2031 105 6 56 chr4 118915277 118915601 -83412746 + AluSq SINE Alu 6 313 0 3041 89 0 5 chr4 118917192 118917598 -83410749 + MLT2A1 LTR ERVL 1 404 -40 313 216 10 82 chr4 118917993 118918090 -83410257 + L1MC4 LINE L1 6614 6703 -1339 375 71 0 156 chr4 118918095 118918609 -83409738 + (TA)n Simple_repeat Simple_repeat 1 433 0 234 215 0 46 chr4 118918620 118918685 -83409662 + (TA)n Simple_repeat Simple_repeat 2 63 0 182 213 0 38 chr4 118918728 118918808 -83409539 + (TA)n Simple_repeat Simple_repeat 1 77 0 278 87 0 22 chr4 118918812 118918858 -83409489 + MLT2A1 LTR ERVL 390 434 -10 412 343 113 5 chr4 118918872 118919076 -83409271 - MIR SINE MIR 0 262 37 22 56 0 0 chr4 118919712 118919748 -83408599 + AT_rich Low_complexity Low_complexity 1 36 0 1715 126 84 0 chr4 118919817 118920105 -83408242 + AluSx SINE Alu 1 310 0 230 191 0 43 chr4 118920110 118920157 -83408190 + MLT1J LTR MaLR 1 45 -466 309 270 96 45 chr4 118920394 118920572 -83407775 + MLT1J LTR MaLR 323 509 -2 1669 171 0 38 chr4 118920652 118920967 -83407380 + AluJb SINE Alu 1 303 -9 202 287 217 8 chr4 118921075 118921204 -83407143 - MIR SINE MIR -78 184 29 206 389 91 18 chr4 118922104 118922325 -83406022 - MIR SINE MIR -6 256 20 189 107 0 0 chr4 118922426 118922454 -83405893 + (T)n Simple_repeat Simple_repeat 1 28 0 184 350 22 120 chr4 118923330 118923739 -83404608 + L2 LINE L2 1095 1463 -1851 605 224 151 87 chr4 118923907 118924299 -83404048 + MLT1H LTR MaLR 130 546 -3 327 221 135 10 chr4 118924511 118924615 -83403732 + L2 LINE L2 1863 1979 -1335 528 350 185 12 chr4 118924948 118925462 -83402885 + L3 LINE CR1 792 1394 -183 42421 37 23 1 chr4 118925475 118931487 -83396860 + L1PA2 LINE L1 1 6148 -7 26 0 0 0 chr4 118931504 118931530 -83396817 + AT_rich Low_complexity Low_complexity 1 26 0 515 114 38 0 chr4 118933547 118933626 -83394721 - MSTA LTR MaLR 0 426 345 * 813 153 125 0 chr4 118933621 118933765 -83394582 - MSTA LTR MaLR -266 162 1 281 368 10 36 chr4 118933873 118934066 -83394281 - L2 LINE L2 -15 3298 3111 487 337 72 0 chr4 118934767 118934960 -83393387 + MIR SINE MIR 20 226 -36 216 158 0 0 chr4 118935033 118935071 -83393276 + A-rich Low_complexity Low_complexity 1 38 0 182 455 5 40 chr4 118935406 118935606 -83392741 + L2 LINE L2 2987 3179 -93 468 262 0 16 chr4 118936152 118936274 -83392073 - L2 LINE L2 0 3313 3194 22 35 0 0 chr4 118936625 118936654 -83391693 + AT_rich Low_complexity Low_complexity 1 29 0 2452 49 0 0 chr4 118937127 118937443 -83390904 + AluY SINE Alu 1 316 0 772 183 27 21 chr4 118938928 118939114 -83389233 + MER53 DNA DNA 3 189 0 826 271 17 12 chr4 118939371 118939611 -83388736 - MIR SINE MIR -2 260 20 1164 170 39 0 chr4 118939971 118940200 -83388147 - L1MA6 LINE L1 0 6300 6063 742 211 94 31 chr4 118940384 118940579 -83387768 - MIR SINE MIR -18 244 32 2210 124 0 0 chr4 118940579 118940885 -83387462 - AluSx SINE Alu -6 306 1 742 211 94 31 chr4 118940885 118940912 -83387435 - MIR SINE MIR -230 32 8 221 211 18 0 chr4 118941647 118941704 -83386643 + (TATG)n Simple_repeat Simple_repeat 3 60 0 6248 121 27 25 chr4 118941769 118942827 -83385520 + Tigger3b DNA MER2_type 2 1062 -169 304 245 51 0 chr4 118943124 118943222 -83385125 - MIR SINE MIR -26 236 134 1592 169 37 4 chr4 118943695 118943968 -83384379 + AluJb SINE Alu 1 282 -30 21 0 0 0 chr4 118944485 118944506 -83383841 + AT_rich Low_complexity Low_complexity 1 21 0 565 250 239 5 chr4 118944821 118945009 -83383338 - MIR SINE MIR -28 234 3 21 0 0 0 chr4 118945159 118945180 -83383167 + AT_rich Low_complexity Low_complexity 1 21 0 879 212 27 5 chr4 118945704 118945888 -83382459 - MER5A DNA MER1_type -1 188 1 1293 212 86 66 chr4 118945988 118946626 -83381721 + L1MC5 LINE L1 7281 7931 -30 1741 145 60 0 chr4 118946626 118946908 -83381439 + AluSx SINE Alu 1 299 -13 2081 113 59 34 chr4 118947108 118947463 -83380884 + THE1B LTR MaLR 1 364 0 191 256 13 128 chr4 118948371 118948449 -83379898 + L2 LINE L2 3188 3256 -16 249 287 62 31 chr4 118948616 118948745 -83379602 - L2 LINE L2 -522 2792 2660 2521 126 3 0 chr4 118948813 118949187 -83379160 - THE1C LTR MaLR 0 375 1 2303 107 6 12 chr4 118949187 118949513 -83378834 - THE1C-int LTR MaLR 0 1580 1257 226 254 0 0 chr4 118950349 118950404 -83377943 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 217 250 73 0 chr4 118950904 118950972 -83377375 - MIR SINE MIR -72 190 118 563 310 31 38 chr4 118951272 118951533 -83376814 - MIR SINE MIR 0 262 4 342 309 161 12 chr4 118951595 118951763 -83376584 - MIR SINE MIR -50 212 20 290 119 0 102 chr4 118951997 118952056 -83376291 - MER63 DNA MER1_type -293 769 717 540 200 0 43 chr4 118952174 118952314 -83376033 + L1MB1 LINE L1 5735 5868 -321 883 164 147 38 chr4 118952614 118952852 -83375495 + ORSL DNA AcHobo 1 264 -11 304 314 0 0 chr4 118953014 118953100 -83375247 + L2 LINE L2 3227 3312 -1 4926 43 2 0 chr4 118953613 118954215 -83374132 - L1PA4 LINE L1 -1 6154 5552 2355 37 14 5 chr4 118954215 118954621 -83373726 + L1PA4 LINE L1 5152 5559 -595 183 258 227 0 chr4 118954621 118954687 -83373660 + MIR SINE MIR 126 206 -56 1962 104 0 7 chr4 118955132 118955402 -83372945 - AluSx SINE Alu -44 268 1 1924 149 56 34 chr4 118955595 118955951 -83372396 + THE1B LTR MaLR 1 364 0 211 244 101 59 chr4 118956127 118956246 -83372101 - MIR SINE MIR 0 262 139 216 0 0 0 chr4 118956251 118956275 -83372072 + (A)n Simple_repeat Simple_repeat 1 24 0 4491 76 2 8 chr4 118956490 118957093 -83371254 - L1P LINE L1 -5546 600 2 445 121 0 0 chr4 118957096 118957162 -83371185 + MLT1A1 LTR MaLR 297 362 -3 434 250 8 17 chr4 118957671 118957791 -83370556 + L1M4 LINE L1 4504 4622 -1524 26 30 0 0 chr4 118957815 118957848 -83370499 + AT_rich Low_complexity Low_complexity 1 33 0 275 231 0 31 chr4 118959524 118959589 -83368758 - MLT1I LTR MaLR -2 407 345 560 199 116 50 chr4 118959671 118959852 -83368495 - MLT1I LTR MaLR -206 203 11 3998 243 16 28 chr4 118959852 118961033 -83367314 - L1M4 LINE L1 -1955 4191 3025 434 235 56 17 chr4 118961156 118961335 -83367012 + MER113 DNA MER1_type? 2 187 -334 381 276 146 27 chr4 118965839 118966024 -83362323 - MIR SINE MIR -55 207 1 22 88 0 0 chr4 118966089 118966146 -83362201 + AT_rich Low_complexity Low_complexity 1 57 0 433 264 98 24 chr4 118967406 118967652 -83360695 - L1MC5 LINE L1 -66 7895 7632 541 301 100 13 chr4 118967769 118968008 -83360339 + MIR SINE MIR 3 262 0 192 308 15 15 chr4 118968018 118968083 -83360264 - MIR SINE MIR -195 67 3 1264 286 72 24 chr4 118968947 118969534 -83358813 - L2 LINE L2 -4 3309 2667 343 333 33 44 chr4 118971204 118971384 -83356963 - MER5A DNA MER1_type 0 189 12 404 339 68 0 chr4 118971707 118971825 -83356522 + L2 LINE L2 3134 3259 -13 1537 188 23 7 chr4 118972025 118972328 -83356019 + MLT1A1 LTR MaLR 1 308 -57 229 65 0 43 chr4 118972328 118972374 -83355973 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 38499 33 2 1 chr4 118972374 118977836 -83350511 - L1PA3 LINE L1 -24 6131 665 267 281 108 60 chr4 118977976 118978446 -83349901 + L1M4 LINE L1 4853 5345 -801 3666 273 112 34 chr4 118978993 118980457 -83347890 + L2 LINE L2 921 2499 -815 233 111 56 0 chr4 118980528 118980564 -83347783 - MER45 DNA AcHobo -18 1563 1526 * 1087 316 52 54 chr4 118980558 118981080 -83347267 - MER45C DNA AcHobo -320 633 113 197 265 20 0 chr4 118981083 118981132 -83347215 + MIR SINE MIR 82 131 -131 554 276 0 0 chr4 118981139 118981244 -83347103 - MER45C DNA AcHobo -848 105 1 424 272 18 18 chr4 118981496 118981610 -83346737 + MIR SINE MIR 18 131 -131 742 184 27 65 chr4 118981643 118981828 -83346519 + MIR SINE MIR 82 259 -3 221 320 0 0 chr4 118981927 118982002 -83346345 + MIR SINE MIR 186 260 -2 260 381 92 17 chr4 118984470 118984709 -83343638 + MLT1K LTR MaLR 13 269 -319 744 217 20 39 chr4 118984752 118984955 -83343392 + MLT1K LTR MaLR 380 578 -10 1628 195 19 93 chr4 118985165 118985586 -83342761 + MLT1B LTR MaLR 1 390 0 204 227 0 0 chr4 118986267 118986311 -83342036 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 1298 161 43 40 chr4 118987133 118987455 -83340892 - L1MA4A LINE L1 0 6303 5981 246 62 0 0 chr4 118987685 118987717 -83340630 + (TG)n Simple_repeat Simple_repeat 1 32 0 205 345 176 12 chr4 118987963 118988218 -83340129 - L3 LINE CR1 -875 702 406 322 312 52 50 chr4 118988557 118988774 -83339573 + MIR SINE MIR 2 212 -50 23 0 0 0 chr4 118988971 118988994 -83339353 + AT_rich Low_complexity Low_complexity 1 23 0 1862 138 3 20 chr4 118989908 118990213 -83338134 - AluJo SINE Alu 0 312 13 546 288 74 0 chr4 118991245 118991408 -83336939 - MLT1G LTR MaLR -364 226 52 1281 149 36 9 chr4 118991425 118991647 -83336700 - L1PA16 LINE L1 -10 6156 5929 230 186 0 0 chr4 118991647 118991690 -83336657 - L1PA15 LINE L1 -194 5971 5929 * 4530 140 22 10 chr4 118991670 118992626 -83335721 - L1PA16 LINE L1 -180 5986 5021 392 221 58 0 chr4 118992627 118992713 -83335634 - MLT1G1 LTR MaLR -490 105 15 686 251 6 25 chr4 118992742 118992905 -83335442 + L2 LINE L2 2160 2319 -995 508 277 140 30 chr4 118992905 118993140 -83335207 + MLT1J LTR MaLR 1 261 -250 1143 315 126 6 chr4 118993287 118994008 -83334339 + L2 LINE L2 2320 3135 -178 899 255 78 90 chr4 118994015 118994434 -83333913 + LTR16A LTR ERVL 1 395 -55 470 200 131 41 chr4 118994467 118994612 -83333735 + L2 LINE L2 3153 3310 -3 1029 186 23 27 chr4 118994710 118994930 -83333417 - MER20 DNA MER1_type 0 219 1 23 0 0 0 chr4 118995884 118995907 -83332440 + AT_rich Low_complexity Low_complexity 1 23 0 40 59 0 0 chr4 118995929 118995997 -83332350 + AT_rich Low_complexity Low_complexity 1 68 0 621 278 35 17 chr4 118996006 118996179 -83332168 + MIR SINE MIR 73 248 -14 433 322 45 67 chr4 118996252 118996566 -83331781 - L2 LINE L2 -1 3312 3006 2381 39 10 26 chr4 118996859 118997166 -83331181 - AluY SINE Alu -9 302 1 213 311 0 0 chr4 118997353 118997414 -83330933 - L2 LINE L2 -11 3261 3201 361 273 10 103 chr4 118997452 118997554 -83330793 - MIR SINE MIR -7 255 178 2402 56 7 7 chr4 118997554 118997856 -83330491 + AluY SINE Alu 1 302 -9 361 273 10 103 chr4 118997856 118997947 -83330400 - MIR SINE MIR -84 178 80 293 235 12 62 chr4 118998650 118998731 -83329616 - MIR3 SINE MIR -54 154 78 1949 109 56 3 chr4 118999219 118999504 -83328843 + AluSc SINE Alu 1 300 -9 22 0 0 0 chr4 118999926 118999948 -83328399 + AT_rich Low_complexity Low_complexity 1 22 0 2696 19 0 7 chr4 119000136 119000444 -83327903 + AluY SINE Alu 1 306 -5 425 300 15 0 chr4 119003614 119003744 -83324603 - MIR SINE MIR -57 205 74 203 400 42 0 chr4 119004202 119004297 -83324050 + L2 LINE L2 3149 3247 -25 459 280 45 35 chr4 119004304 119004504 -83323843 - L2 LINE L2 0 3313 3112 377 315 123 0 chr4 119004642 119004788 -83323559 + MIR SINE MIR 96 259 -3 248 380 80 19 chr4 119007499 119007762 -83320585 + L3 LINE CR1 1215 1493 -84 315 0 0 0 chr4 119007828 119007863 -83320484 + (CA)n Simple_repeat Simple_repeat 2 36 0 2319 71 0 3 chr4 119007869 119008152 -83320195 - AluY SINE Alu -27 284 3 205 350 0 0 chr4 119009253 119009313 -83319034 - MER5A DNA MER1_type -59 130 71 24 0 0 0 chr4 119010128 119010152 -83318195 + AT_rich Low_complexity Low_complexity 1 24 0 1325 120 46 0 chr4 119010231 119010448 -83317899 - L1MA4 LINE L1 0 6300 6074 8306 42 1 0 chr4 119012091 119013110 -83315237 - L1PA5 LINE L1 -1115 5031 4012 7216 39 8 0 chr4 119013113 119014262 -83314085 + L1PA5 LINE L1 5008 6164 0 270 0 0 0 chr4 119014282 119014312 -83314035 + (A)n Simple_repeat Simple_repeat 1 30 0 423 323 18 68 chr4 119014340 119014560 -83313787 - MIR SINE MIR -3 259 51 317 299 41 10 chr4 119014723 119014820 -83313527 + MIR SINE MIR 103 202 -60 232 348 123 21 chr4 119015508 119015695 -83312652 - MIR SINE MIR -50 212 7 2794 178 64 2 chr4 119015881 119016486 -83311861 + L1PA16 LINE L1 5493 6157 -9 3506 125 19 0 chr4 119016849 119017362 -83310985 + MER1A DNA MER1_type 1 523 -4 1778 88 58 146 chr4 119017397 119017808 -83310539 - THE1C LTR MaLR 0 375 1 329 338 211 8 chr4 119018231 119018624 -83309723 + L2 LINE L2 1775 2247 -1067 323 312 28 18 chr4 119018742 119018851 -83309496 + L2 LINE L2 2248 2357 -957 447 239 108 23 chr4 119019186 119019316 -83309031 - MER69 DNA AcHobo 0 2526 2386 1447 279 55 33 chr4 119019780 119020239 -83308108 - MER115 DNA AcHobo -3 690 222 398 378 0 13 chr4 119020267 119020423 -83307924 - MER115 DNA AcHobo -539 154 1 201 250 19 0 chr4 119020511 119020563 -83307784 + (TGAA)n Simple_repeat Simple_repeat 4 56 0 222 341 32 48 chr4 119020718 119020844 -83307503 + MER5A DNA MER1_type 65 188 -1 27 49 0 0 chr4 119021270 119021311 -83307036 + AT_rich Low_complexity Low_complexity 1 41 0 371 348 40 30 chr4 119021465 119021666 -83306681 + MIR SINE MIR 50 252 -10 245 289 53 35 chr4 119023431 119023545 -83304802 + MIR3 SINE MIR 54 169 -39 26 82 0 0 chr4 119023949 119024010 -83304337 + AT_rich Low_complexity Low_complexity 1 61 0 23 68 0 0 chr4 119026878 119026922 -83301425 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr4 119028301 119028324 -83300023 + AT_rich Low_complexity Low_complexity 1 23 0 611 308 84 43 chr4 119029419 119029883 -83298464 - L2 LINE L2 0 3313 2831 223 337 48 0 chr4 119029997 119030080 -83298267 - MIR SINE MIR -85 123 37 384 261 78 86 chr4 119030363 119030788 -83297559 + MLT1J2 LTR MaLR 1 461 -50 7093 48 6 0 chr4 119030791 119032243 -83296104 - L1PA5 LINE L1 0 6154 4697 612 274 219 5 chr4 119033093 119033308 -83295039 - MIR SINE MIR -1 261 1 580 83 97 7 chr4 119034263 119034563 -83293784 + (TA)n Simple_repeat Simple_repeat 1 327 0 399 88 101 13 chr4 119034873 119035032 -83293315 + (TA)n Simple_repeat Simple_repeat 2 174 0 387 0 0 0 chr4 119035797 119035840 -83292507 + (TG)n Simple_repeat Simple_repeat 2 44 0 253 69 0 49 chr4 119035880 119035928 -83292419 - L1ME LINE L1 -603 5561 5516 210 71 0 0 chr4 119036166 119036194 -83292153 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 475 293 95 52 chr4 119036198 119036657 -83291690 + L1MC4a LINE L1 5373 5805 -316 219 98 0 98 chr4 119036810 119036871 -83291476 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 360 0 0 0 chr4 119038073 119038113 -83290234 + (TG)n Simple_repeat Simple_repeat 1 40 0 248 327 80 24 chr4 119038122 119038661 -83289686 - L1MC4a LINE L1 -1880 5928 5254 240 311 25 19 chr4 119038734 119038895 -83289452 - L1MC4a LINE L1 -1016 5130 4969 22 56 0 0 chr4 119041133 119041169 -83287178 + AT_rich Low_complexity Low_complexity 1 36 0 184 295 87 79 chr4 119043001 119043242 -83285105 - L2 LINE L2 -219 3053 2811 522 257 97 21 chr4 119043320 119043464 -83284883 + MER5B DNA MER1_type 1 155 -23 938 216 16 0 chr4 119043469 119043654 -83284693 + MER5A DNA MER1_type 2 189 0 218 354 106 6 chr4 119043961 119044122 -83284225 - L2 LINE L2 -797 2517 2341 971 228 29 0 chr4 119044219 119044425 -83283922 - MER20 DNA MER1_type -5 214 3 234 0 0 0 chr4 119045418 119045444 -83282903 + (TG)n Simple_repeat Simple_repeat 1 26 0 365 376 19 0 chr4 119045466 119045623 -83282724 + MIR3 SINE MIR 48 207 -1 180 0 0 0 chr4 119047940 119047960 -83280387 + (A)n Simple_repeat Simple_repeat 1 20 0 298 157 114 0 chr4 119048844 119048914 -83279433 - MIR SINE MIR -2 260 183 339 25 0 0 chr4 119051453 119051493 -83276854 + (TG)n Simple_repeat Simple_repeat 2 41 0 614 202 74 89 chr4 119051904 119052143 -83276204 + MIR SINE MIR 4 239 -23 1251 167 68 32 chr4 119055252 119055504 -83272843 + L1MB3 LINE L1 5444 5704 -479 2555 140 15 17 chr4 119055610 119056080 -83272267 + L1MB3 LINE L1 5710 6178 -5 326 268 125 67 chr4 119056369 119056566 -83271781 - L2 LINE L2 -381 2933 2720 1985 106 23 20 chr4 119056566 119056868 -83271479 - AluSx SINE Alu -9 303 1 326 268 125 67 chr4 119056868 119056894 -83271453 - L2 LINE L2 -594 2720 2697 23 33 0 0 chr4 119057352 119057382 -83270965 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 119057827 119057850 -83270497 + AT_rich Low_complexity Low_complexity 1 23 0 219 98 0 98 chr4 119058638 119058699 -83269648 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 475 293 95 52 chr4 119058852 119059311 -83269036 - L1MC4a LINE L1 -316 5805 5373 210 71 0 0 chr4 119059315 119059343 -83269004 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 253 69 0 49 chr4 119059581 119059629 -83268718 + L1M2 LINE L1 5516 5561 -603 372 43 0 0 chr4 119059662 119059708 -83268639 + (CA)n Simple_repeat Simple_repeat 1 46 0 23 68 0 0 chr4 119060563 119060607 -83267740 + AT_rich Low_complexity Low_complexity 1 44 0 26 82 0 0 chr4 119063475 119063536 -83264811 + AT_rich Low_complexity Low_complexity 1 61 0 231 298 53 35 chr4 119063940 119064054 -83264293 - MIR3 SINE MIR -39 169 54 371 348 40 30 chr4 119065820 119066021 -83262326 - MIR SINE MIR -10 252 50 27 49 0 0 chr4 119066175 119066216 -83262131 + AT_rich Low_complexity Low_complexity 1 41 0 211 341 32 48 chr4 119066642 119066768 -83261579 - MER5A DNA MER1_type -1 188 65 201 250 19 0 chr4 119066923 119066975 -83261372 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 405 378 0 13 chr4 119067063 119067219 -83261128 + MER115 DNA AcHobo 1 154 -539 1457 279 55 33 chr4 119067247 119067706 -83260641 + MER115 DNA AcHobo 222 690 -3 439 239 108 23 chr4 119068170 119068300 -83260047 + MER69 DNA AcHobo 2386 2526 0 326 312 28 18 chr4 119068635 119068744 -83259603 - L2 LINE L2 -957 2357 2248 207 250 0 31 chr4 119068786 119068850 -83259497 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 315 341 211 8 chr4 119068862 119069255 -83259092 - L2 LINE L2 -1067 2247 1775 1791 87 58 148 chr4 119069678 119070090 -83258257 + THE1C LTR MaLR 1 375 0 3558 123 19 0 chr4 119070125 119070638 -83257709 - MER1A DNA MER1_type -4 523 1 2791 178 64 2 chr4 119071001 119071604 -83256743 - L1PA16 LINE L1 -9 6157 5495 227 328 142 8 chr4 119071802 119071979 -83256368 + MIR SINE MIR 12 212 -50 317 299 41 10 chr4 119072667 119072764 -83255583 - MIR SINE MIR -60 202 103 443 326 14 68 chr4 119072927 119073148 -83255199 + MIR SINE MIR 51 259 -3 197 59 59 0 chr4 119073214 119073248 -83255099 + T-rich Low_complexity Low_complexity 1 36 0 7244 39 9 0 chr4 119073248 119074364 -83253983 - L1PA5 LINE L1 -24 6130 5008 8264 42 2 0 chr4 119074367 119075385 -83252962 + L1PA5 LINE L1 4012 5031 -1115 1325 120 46 0 chr4 119077029 119077246 -83251101 + L1MA4 LINE L1 6074 6300 0 24 0 0 0 chr4 119077325 119077349 -83250998 + AT_rich Low_complexity Low_complexity 1 24 0 205 350 0 0 chr4 119078160 119078220 -83250127 + MER5A DNA MER1_type 71 130 -59 2321 71 0 3 chr4 119079321 119079604 -83248743 + AluY SINE Alu 3 284 -27 297 0 0 0 chr4 119079610 119079643 -83248704 + (TG)n Simple_repeat Simple_repeat 2 34 0 239 369 85 21 chr4 119079734 119079970 -83248377 - L3 LINE CR1 -112 1465 1215 377 315 123 0 chr4 119082677 119082823 -83245524 - MIR SINE MIR -3 259 96 459 280 45 35 chr4 119082961 119083161 -83245186 + L2 LINE L2 3112 3313 0 203 400 42 0 chr4 119083168 119083263 -83245084 - L2 LINE L2 -25 3247 3149 425 300 15 0 chr4 119083721 119083851 -83244496 + MIR SINE MIR 74 205 -57 2696 19 0 7 chr4 119087034 119087342 -83241005 - AluY SINE Alu -5 306 1 22 0 0 0 chr4 119087530 119087552 -83240795 + AT_rich Low_complexity Low_complexity 1 22 0 1957 108 56 3 chr4 119087976 119088262 -83240085 - AluSc SINE Alu -8 301 1 293 235 12 62 chr4 119088750 119088831 -83239516 + MIR3 SINE MIR 78 154 -54 361 273 10 103 chr4 119089534 119089625 -83238722 + MIR SINE MIR 80 145 -117 2412 62 7 3 chr4 119089625 119089929 -83238418 - AluY SINE Alu -6 305 1 361 273 10 103 chr4 119089929 119090031 -83238316 + MIR SINE MIR 145 255 -7 213 311 0 0 chr4 119090069 119090130 -83238217 + L2 LINE L2 3201 3261 -11 997 293 65 11 chr4 119090615 119090966 -83237381 - MLT1I LTR MaLR 0 409 40 973 264 12 19 chr4 119091464 119091722 -83236625 - MIR SINE MIR 0 262 7 203 103 26 0 chr4 119094222 119094261 -83234086 + (CA)n Simple_repeat Simple_repeat 2 41 0 236 371 22 22 chr4 119094679 119094768 -83233579 - MIR3 SINE MIR -108 100 12 24 32 0 0 chr4 119094826 119094857 -83233490 + AT_rich Low_complexity Low_complexity 1 31 0 538 272 94 20 chr4 119095021 119095223 -83233124 + MIR SINE MIR 46 262 0 815 257 88 4 chr4 119095393 119095619 -83232728 - MIR SINE MIR -6 256 12 336 64 0 0 chr4 119097223 119097270 -83231077 + (TG)n Simple_repeat Simple_repeat 2 48 0 592 75 0 0 chr4 119099331 119099411 -83228936 - MADE1 DNA Mariner 0 80 1 635 237 150 6 chr4 119099598 119099771 -83228576 + MIR SINE MIR 61 258 -4 2063 116 59 34 chr4 119100785 119101140 -83227207 - THE1B LTR MaLR 0 364 1 1749 145 60 0 chr4 119101340 119101623 -83226724 - AluSx SINE Alu -12 300 1 1310 210 86 66 chr4 119101623 119102261 -83226086 - L1MC5 LINE L1 -30 7931 7281 889 211 27 5 chr4 119102361 119102546 -83225801 + MER5A DNA MER1_type 1 189 0 21 0 0 0 chr4 119103069 119103090 -83225257 + AT_rich Low_complexity Low_complexity 1 21 0 565 250 239 5 chr4 119103240 119103428 -83224919 + MIR SINE MIR 3 234 -28 21 0 0 0 chr4 119103743 119103764 -83224583 + AT_rich Low_complexity Low_complexity 1 21 0 449 267 17 35 chr4 119104048 119104220 -83224127 + MIR SINE MIR 20 188 -74 23 0 0 0 chr4 119104687 119104710 -83223637 + AT_rich Low_complexity Low_complexity 1 23 0 621 308 84 43 chr4 119105805 119106269 -83222078 - L2 LINE L2 0 3313 2831 222 337 48 0 chr4 119106383 119106466 -83221881 - MIR SINE MIR -85 123 37 408 258 79 87 chr4 119106749 119107174 -83221173 + MLT1J2 LTR MaLR 1 461 -50 7073 49 6 0 chr4 119107177 119108629 -83219718 - L1PA5 LINE L1 0 6154 4697 601 274 219 5 chr4 119109479 119109694 -83218653 - MIR SINE MIR -1 261 1 598 83 96 7 chr4 119110649 119110951 -83217396 + (TA)n Simple_repeat Simple_repeat 1 329 0 390 88 94 19 chr4 119111261 119111420 -83216927 + (TA)n Simple_repeat Simple_repeat 1 171 0 282 97 6 137 chr4 119111590 119111765 -83216582 + (TA)n Simple_repeat Simple_repeat 2 153 0 243 273 0 0 chr4 119111776 119111842 -83216505 + (TA)n Simple_repeat Simple_repeat 2 67 0 182 213 0 38 chr4 119111885 119111965 -83216382 + (TA)n Simple_repeat Simple_repeat 2 78 0 278 87 0 22 chr4 119111969 119112015 -83216332 + MLT2A1 LTR ERVL 390 434 -10 412 343 113 5 chr4 119112029 119112233 -83216114 - MIR SINE MIR 0 262 37 22 56 0 0 chr4 119112869 119112905 -83215442 + AT_rich Low_complexity Low_complexity 1 36 0 1715 126 84 0 chr4 119112974 119113262 -83215085 + AluSx SINE Alu 1 310 0 230 191 0 43 chr4 119113267 119113314 -83215033 + MLT1J LTR MaLR 1 45 -466 309 270 96 45 chr4 119113551 119113729 -83214618 + MLT1J LTR MaLR 323 509 -2 1669 171 0 38 chr4 119113809 119114124 -83214223 + AluJb SINE Alu 1 303 -9 202 287 217 8 chr4 119114232 119114361 -83213986 - MIR SINE MIR -78 184 29 206 389 91 18 chr4 119115261 119115482 -83212865 - MIR SINE MIR -6 256 20 231 114 0 0 chr4 119115584 119115619 -83212728 + (T)n Simple_repeat Simple_repeat 1 35 0 184 350 22 120 chr4 119116533 119116942 -83211405 + L2 LINE L2 1095 1463 -1851 605 224 151 87 chr4 119117110 119117502 -83210845 + MLT1H LTR MaLR 130 546 -3 327 221 135 10 chr4 119117714 119117818 -83210529 + L2 LINE L2 1863 1979 -1335 528 350 185 12 chr4 119118151 119118665 -83209682 + L3 LINE CR1 792 1394 -183 42421 37 23 1 chr4 119118678 119124690 -83203657 + L1PA2 LINE L1 1 6148 -7 26 0 0 0 chr4 119124707 119124733 -83203614 + AT_rich Low_complexity Low_complexity 1 26 0 515 114 38 0 chr4 119126750 119126829 -83201518 - MSTA LTR MaLR 0 426 345 * 813 153 125 0 chr4 119126824 119126968 -83201379 - MSTA LTR MaLR -266 162 1 281 368 10 36 chr4 119127076 119127269 -83201078 - L2 LINE L2 -15 3298 3111 487 337 72 0 chr4 119127970 119128163 -83200184 + MIR SINE MIR 20 226 -36 216 158 0 0 chr4 119128236 119128274 -83200073 + A-rich Low_complexity Low_complexity 1 38 0 182 455 5 40 chr4 119128609 119128809 -83199538 + L2 LINE L2 2987 3179 -93 468 262 0 16 chr4 119129355 119129477 -83198870 - L2 LINE L2 0 3313 3194 22 35 0 0 chr4 119129828 119129857 -83198490 + AT_rich Low_complexity Low_complexity 1 29 0 2466 46 0 0 chr4 119130330 119130646 -83197701 + AluY SINE Alu 1 316 0 772 183 27 21 chr4 119132131 119132317 -83196030 + MER53 DNA DNA 3 189 0 826 271 17 12 chr4 119132574 119132814 -83195533 - MIR SINE MIR -2 260 20 1141 175 39 0 chr4 119133174 119133403 -83194944 - L1MA6 LINE L1 0 6300 6063 742 211 94 31 chr4 119133587 119133782 -83194565 - MIR SINE MIR -18 244 32 2224 121 0 0 chr4 119133782 119134088 -83194259 - AluSx SINE Alu -6 306 1 742 211 94 31 chr4 119134088 119134115 -83194232 - MIR SINE MIR -230 32 8 221 211 18 0 chr4 119134850 119134907 -83193440 + (TATG)n Simple_repeat Simple_repeat 3 60 0 6248 122 35 15 chr4 119134972 119135538 -83192809 + Tigger3b DNA MER2_type 2 599 -2429 234 0 0 0 chr4 119135538 119135564 -83192783 + (TA)n Simple_repeat Simple_repeat 2 27 0 6248 122 35 15 chr4 119135564 119136038 -83192309 + Tigger3b DNA MER2_type 599 1062 -169 241 268 14 0 chr4 119136335 119136406 -83191941 - MIR SINE MIR -26 236 165 3041 89 0 5 chr4 119136979 119137385 -83190962 - MLT2A1 LTR ERVL -40 404 1 2031 105 6 56 chr4 119138976 119139300 -83189047 - AluSq SINE Alu 0 313 6 189 0 0 0 chr4 119139345 119139366 -83188981 + (TA)n Simple_repeat Simple_repeat 2 22 0 706 237 39 77 chr4 119139759 119140071 -83188276 - LTR37A LTR ERV1 -12 414 115 425 276 111 85 chr4 119141254 119141631 -83186716 + MLT1L LTR MaLR 6 392 -223 743 243 45 50 chr4 119142160 119142382 -83185965 - MIR SINE MIR -41 221 1 326 348 108 27 chr4 119143201 119143532 -83184815 - L2 LINE L2 -830 2484 2127 367 213 53 0 chr4 119143532 119143607 -83184740 + MER5A DNA MER1_type 1 79 -110 289 157 39 0 chr4 119143639 119143690 -83184657 + MER66A LTR ERV1 280 332 -146 6704 53 33 0 chr4 119143719 119145171 -83183176 + L1PA8 LINE L1 4681 6163 -9 826 160 0 0 chr4 119145176 119145340 -83183007 - AluSg/x SINE Alu 0 327 164 1518 148 17 81 chr4 119145350 119145648 -83182699 - AluJo SINE Alu -33 279 1 358 253 11 11 chr4 119146482 119146577 -83181770 + MIR SINE MIR 79 173 -89 23 33 0 0 chr4 119146862 119146892 -83181455 + AT_rich Low_complexity Low_complexity 1 30 0 1370 219 10 70 chr4 119147668 119148051 -83180296 - MLT1A1 LTR MaLR -5 360 1 2180 73 30 33 chr4 119148351 119148654 -83179693 + AluY SINE Alu 1 302 -9 1903 172 3 0 chr4 119148668 119148971 -83179376 + AluJo SINE Alu 1 304 -8 492 189 47 28 chr4 119149705 119149811 -83178536 - MER5B DNA MER1_type -68 110 3 192 335 41 35 chr4 119149831 119150001 -83178346 + L2 LINE L2 2914 3084 -188 436 284 51 51 chr4 119150439 119150636 -83177711 + MIR SINE MIR 20 216 -46 859 253 94 0 chr4 119153056 119153289 -83175058 - MIR SINE MIR -1 261 7 272 351 101 10 chr4 119154148 119154356 -83173991 + MIR SINE MIR 29 255 -7 21 57 0 0 chr4 119155950 119155985 -83172362 + AT_rich Low_complexity Low_complexity 1 35 0 428 285 230 15 chr4 119157706 119157906 -83170441 - MIR SINE MIR 0 262 20 226 204 74 19 chr4 119157921 119157975 -83170372 - MIR SINE MIR -201 61 5 218 339 54 18 chr4 119158847 119158959 -83169388 - L2 LINE L2 -18 3295 3180 233 292 15 0 chr4 119159064 119159129 -83169218 - MLT1E3 LTR MaLR -136 488 423 2306 101 0 3 chr4 119159368 119159666 -83168681 + AluSx SINE Alu 1 297 -15 432 253 82 57 chr4 119159733 119159975 -83168372 - MIR SINE MIR 0 262 18 944 259 4 26 chr4 119160027 119160259 -83168088 - MIR SINE MIR -21 241 15 563 215 177 0 chr4 119161086 119161244 -83167103 + MIR SINE MIR 56 241 -21 24 0 0 0 chr4 119161593 119161617 -83166730 + AT_rich Low_complexity Low_complexity 1 24 0 384 241 0 0 chr4 119161966 119162082 -83166265 + CT-rich Low_complexity Low_complexity 1 116 0 258 125 0 42 chr4 119162572 119162620 -83165727 - MIR SINE MIR -6 256 211 949 230 165 47 chr4 119162661 119162892 -83165455 - MLT1E LTR MaLR -3 590 305 206 61 0 30 chr4 119162892 119162925 -83165422 + (TTG)n Simple_repeat Simple_repeat 2 33 0 949 230 165 47 chr4 119162925 119163032 -83165315 - MLT1E LTR MaLR -288 305 212 1337 200 70 46 chr4 119163034 119163404 -83164943 - Charlie1a DNA MER1_type -668 787 409 1183 235 77 22 chr4 119163426 119163749 -83164598 + Charlie1a DNA MER1_type 40 380 -1075 22 56 0 0 chr4 119164258 119164294 -83164053 + AT_rich Low_complexity Low_complexity 1 36 0 206 267 151 12 chr4 119164512 119164598 -83163749 + MIR SINE MIR 153 250 -12 23 54 0 0 chr4 119215049 119215086 -83113261 + AT_rich Low_complexity Low_complexity 1 37 0 192 184 0 0 chr4 119215316 119215365 -83112982 + (CA)n Simple_repeat Simple_repeat 2 50 0 25 65 0 0 chr4 119215903 119215949 -83112398 + AT_rich Low_complexity Low_complexity 1 46 0 22 56 0 0 chr4 119216381 119216417 -83111930 + AT_rich Low_complexity Low_complexity 1 36 0 37 39 0 0 chr4 119216834 119216885 -83111462 + AT_rich Low_complexity Low_complexity 1 51 0 2222 111 0 13 chr4 119217583 119217898 -83110449 + AluSq SINE Alu 1 311 -2 419 250 160 27 chr4 119217949 119218137 -83110210 - MIR SINE MIR -29 233 21 700 341 9 13 chr4 119218673 119218902 -83109445 + MIR SINE MIR 31 258 -4 21 36 0 0 chr4 119219187 119219215 -83109132 + AT_rich Low_complexity Low_complexity 1 28 0 2122 59 0 0 chr4 119219258 119219512 -83108835 - AluY SINE Alu -6 305 52 389 299 104 42 chr4 119219709 119220111 -83108236 + HAL1 LINE L1 1663 2089 -418 304 231 163 34 chr4 119220444 119220591 -83107756 + MIR SINE MIR 53 218 -44 398 264 223 7 chr4 119221345 119221493 -83106854 - MER5A DNA MER1_type -6 183 4 24 0 0 0 chr4 119222316 119222340 -83106007 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 119222582 119222603 -83105744 + AT_rich Low_complexity Low_complexity 1 21 0 217 286 87 63 chr4 119222792 119222918 -83105429 + MIR SINE MIR 107 235 -27 1236 138 38 0 chr4 119223329 119223539 -83104808 - L1MC1 LINE L1 0 6333 6116 334 227 108 85 chr4 119223620 119223796 -83104551 + L2 LINE L2 3134 3313 0 180 253 108 36 chr4 119223923 119224006 -83104341 + L3 LINE CR1 790 878 -699 775 80 18 0 chr4 119224475 119224587 -83103760 - L1PA6 LINE L1 -213 5959 5846 1460 92 5 0 chr4 119224587 119224787 -83103560 + L1PA6 LINE L1 5948 6154 0 1258 188 0 21 chr4 119224897 119225131 -83103216 + MER46A DNA MER2_type 1 229 -7 250 200 17 17 chr4 119225468 119225528 -83102819 - MIR SINE MIR -22 240 181 23 97 0 0 chr4 119226236 119226308 -83102039 + AT_rich Low_complexity Low_complexity 1 72 0 2188 106 3 0 chr4 119226314 119226606 -83101741 - AluSg SINE Alu -17 293 1 259 316 36 36 chr4 119227069 119227208 -83101139 - MIR3 SINE MIR -36 172 34 232 305 42 42 chr4 119228091 119228186 -83100161 + MIR SINE MIR 39 133 -129 188 83 0 28 chr4 119229045 119229081 -83099266 + (TTAAA)n Simple_repeat Simple_repeat 1 35 0 596 210 48 0 chr4 119229082 119229206 -83099141 - MER3 DNA MER1_type -79 130 1 620 284 149 0 chr4 119230030 119230252 -83098095 + MIR SINE MIR 2 256 -6 207 114 0 0 chr4 119230253 119230288 -83098059 + (TTG)n Simple_repeat Simple_repeat 3 37 0 507 282 115 60 chr4 119230341 119230886 -83097461 + MLT1H1 LTR MaLR 11 555 0 2378 51 7 0 chr4 119231884 119232179 -83096168 - AluY SINE Alu -14 297 1 369 0 0 0 chr4 119232227 119232268 -83096079 + (TG)n Simple_repeat Simple_repeat 2 42 0 1908 153 64 0 chr4 119234414 119234741 -83093606 - MER7A DNA MER2_type 0 346 1 250 307 59 30 chr4 119235289 119235390 -83092957 + MIR SINE MIR 125 228 -34 201 74 0 0 chr4 119236372 119236399 -83091948 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 1699 224 50 64 chr4 119236399 119236961 -83091386 + MLT2B3 LTR ERVL 1 554 0 395 38 19 0 chr4 119238186 119238239 -83090108 + (TG)n Simple_repeat Simple_repeat 1 54 0 2608 154 7 2 chr4 119238352 119238800 -83089547 + L1MA6 LINE L1 5725 6174 -126 293 221 106 29 chr4 119239194 119239298 -83089049 + MER103 DNA DNA 1 112 -54 1662 162 50 77 chr4 119239411 119239812 -83088535 - MLT1B LTR MaLR 0 390 1 451 152 0 13 chr4 119240243 119240322 -83088025 - MER116 DNA Mariner -2 78 1 2221 105 3 0 chr4 119240468 119240763 -83087584 - AluSq SINE Alu -17 296 1 436 335 158 11 chr4 119242631 119242998 -83085349 + MLT1J2 LTR MaLR 3 423 -27 312 357 36 22 chr4 119243402 119243626 -83084721 + HAL1 LINE L1 483 709 -1798 946 209 181 53 chr4 119244056 119244376 -83083971 - MLT1A1 LTR MaLR -1 364 4 441 0 0 0 chr4 119244824 119244873 -83083474 + (CA)n Simple_repeat Simple_repeat 2 50 0 586 248 25 6 chr4 119244875 119245036 -83083311 - MER103 DNA DNA -1 165 2 34 0 0 0 chr4 119245772 119245806 -83082541 + AT_rich Low_complexity Low_complexity 1 34 0 1643 115 19 22 chr4 119245809 119246079 -83082268 - L1MA2 LINE L1 -1 6303 6035 1900 115 3 35 chr4 119246265 119246622 -83081725 + MER4A LTR ERV1 261 664 0 217 212 30 30 chr4 119247822 119247888 -83080459 + CT-rich Low_complexity Low_complexity 3 68 0 487 253 143 7 chr4 119248812 119248966 -83079381 + MER5B DNA MER1_type 3 177 -1 30 45 0 0 chr4 119251322 119251366 -83076981 + AT_rich Low_complexity Low_complexity 1 44 0 217 221 44 15 chr4 119251429 119251497 -83076850 + CT-rich Low_complexity Low_complexity 3 72 0 321 50 33 83 chr4 119251501 119251561 -83076786 - Alu SINE Alu 0 302 246 940 110 0 0 chr4 119251565 119251692 -83076655 - AluSg SINE Alu -183 127 1 266 296 0 127 chr4 119252828 119252970 -83075377 - MIR SINE MIR -133 129 6 181 268 197 0 chr4 119253676 119253747 -83074600 - L2 LINE L2 0 3313 3229 227 293 43 35 chr4 119253870 119253986 -83074361 - L2 LINE L2 -301 3012 2896 194 367 102 10 chr4 119256134 119256232 -83072115 - MIR SINE MIR -130 132 26 593 91 0 0 chr4 119256319 119256396 -83071951 + AluSq/x SINE Alu 56 132 -181 2457 86 0 3 chr4 119256399 119256713 -83071634 + AluSq SINE Alu 1 313 0 2270 77 0 3 chr4 119257801 119258098 -83070249 + AluY SINE Alu 1 296 -15 1608 188 53 9 chr4 119258244 119258585 -83069762 - MLT1A1 LTR MaLR 0 365 10 199 299 122 73 chr4 119258991 119259089 -83069258 - L2 LINE L2 -212 3060 2968 1916 143 3 0 chr4 119259089 119259375 -83068972 + AluSq SINE Alu 4 290 -23 199 299 122 73 chr4 119259375 119259918 -83068429 - L2 LINE L2 -304 2968 2382 213 275 0 43 chr4 119259988 119260057 -83068290 - L2 LINE L2 -1 3312 3247 205 277 0 21 chr4 119260213 119260260 -83068087 + MIR3 SINE MIR 110 155 -53 * 497 277 155 0 chr4 119260259 119260414 -83067933 + MER5A DNA MER1_type 11 189 0 29 0 0 0 chr4 119260616 119260645 -83067702 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 119261237 119261265 -83067082 + AT_rich Low_complexity Low_complexity 1 28 0 1925 139 3 14 chr4 119261685 119261980 -83066367 - AluSx SINE Alu -19 293 2 66 0 0 0 chr4 119262885 119262951 -83065396 + AT_rich Low_complexity Low_complexity 1 66 0 211 234 21 0 chr4 119264764 119264811 -83063536 + (CATA)n Simple_repeat Simple_repeat 2 49 0 2650 296 64 65 chr4 119265892 119267447 -83060900 - HERV16 LTR ERVL -3442 1554 2 474 313 40 54 chr4 119267451 119267879 -83060468 - LTR16A1 LTR ERVL -2 455 34 21 71 0 0 chr4 119267974 119268016 -83060331 + AT_rich Low_complexity Low_complexity 1 42 0 305 327 47 20 chr4 119268451 119268601 -83059746 - L2 LINE L2 -21 3292 3139 199 287 111 83 chr4 119268973 119269081 -83059266 + L2 LINE L2 3154 3264 -8 455 268 46 52 chr4 119269127 119269321 -83059026 - MIR SINE MIR 0 262 70 247 276 0 82 chr4 119270630 119270728 -83057619 + L2 LINE L2 3000 3089 -183 559 255 90 71 chr4 119270807 119271074 -83057273 + L2 LINE L2 3042 3313 0 1594 169 44 73 chr4 119272765 119273149 -83055198 - THE1C LTR MaLR -2 373 1 2324 98 0 3 chr4 119273347 119273652 -83054695 + AluSg1 SINE Alu 1 304 -5 25 51 0 0 chr4 119273808 119273847 -83054500 + AT_rich Low_complexity Low_complexity 1 39 0 16070 88 15 1 chr4 119273878 119276956 -83051391 - L1PA7 LINE L1 -2 6467 3356 12712 116 8 38 chr4 119276958 119280064 -83048283 - L1PA7 LINE L1 -3387 3074 1 21 36 0 0 chr4 119280252 119280280 -83048067 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chr4 119280353 119280385 -83047962 + AT_rich Low_complexity Low_complexity 1 32 0 1263 125 14 5 chr4 119280628 119280836 -83047511 - L1MA9 LINE L1 0 6312 6103 225 214 18 18 chr4 119283909 119283965 -83044382 + LTR68 LTR ERV1 224 279 -461 324 0 0 0 chr4 119284615 119284651 -83043696 + (A)n Simple_repeat Simple_repeat 1 36 0 212 255 0 0 chr4 119289435 119289482 -83038865 - L2 LINE L2 -2 3311 3265 192 77 0 0 chr4 119290839 119290865 -83037482 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 24 67 0 0 chr4 119291720 119291765 -83036582 + AT_rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr4 119292543 119292574 -83035773 + AT_rich Low_complexity Low_complexity 1 31 0 351 278 124 10 chr4 119292577 119292674 -83035673 - L2 LINE L2 -15 3298 3191 23 0 0 0 chr4 119292692 119292715 -83035632 + AT_rich Low_complexity Low_complexity 1 23 0 206 295 171 0 chr4 119294093 119294198 -83034149 + MIR SINE MIR 71 193 -69 2021 98 0 11 chr4 119294267 119294532 -83033815 + AluSq SINE Alu 1 262 -51 375 41 0 0 chr4 119294548 119294597 -83033750 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 244 331 149 6 chr4 119296047 119296222 -83032125 + MIR SINE MIR 3 202 -60 189 300 38 75 chr4 119296238 119296318 -83032029 - L2 LINE L2 -38 3234 3158 268 280 127 59 chr4 119296851 119296969 -83031378 + MIR3 SINE MIR 6 131 -77 1705 139 34 106 chr4 119297011 119297174 -83031173 + L1MA6 LINE L1 5941 6114 -186 2103 151 19 41 chr4 119297174 119297586 -83030761 + MER57A LTR ERV1 1 403 0 1705 139 34 106 chr4 119297586 119297620 -83030727 + L1MA6 LINE L1 6114 6149 -151 2190 116 0 0 chr4 119297620 119297905 -83030442 + AluSx SINE Alu 1 285 -27 1705 139 34 106 chr4 119297905 119298094 -83030253 + L1MA6 LINE L1 6149 6300 0 2323 69 0 3 chr4 119298180 119298471 -83029876 + AluY SINE Alu 5 294 -17 3945 125 29 94 chr4 119298546 119299386 -83028961 + LTR1 LTR ERV1 1 785 0 269 216 0 0 chr4 119299632 119299683 -83028664 - MER63 DNA MER1_type -158 52 2 315 0 0 0 chr4 119302663 119302698 -83025649 + (TG)n Simple_repeat Simple_repeat 2 36 0 1312 287 106 37 chr4 119303054 119303650 -83024697 + L2 LINE L2 2298 2934 -380 836 267 79 24 chr4 119303844 119304185 -83024162 + L2 LINE L2 2936 3295 -18 4022 128 18 2 chr4 119304897 119305522 -83022825 + MER41B LTR ERV1 1 635 0 2159 101 9 28 chr4 119306799 119307116 -83021231 + AluSx SINE Alu 1 311 -1 252 167 0 0 chr4 119307548 119307596 -83020751 + A-rich Low_complexity Low_complexity 1 48 0 425 163 23 0 chr4 119307708 119307794 -83020553 + A-rich Low_complexity Low_complexity 2 89 0 261 246 62 0 chr4 119308039 119308104 -83020243 + HAL1 LINE L1 800 868 -1639 313 245 156 87 chr4 119309057 119309411 -83018936 - MLT1J2 LTR MaLR -16 428 68 26 50 0 0 chr4 119309663 119309703 -83018644 + AT_rich Low_complexity Low_complexity 1 40 0 246 304 17 9 chr4 119311202 119311317 -83017030 - L1M4 LINE L1 -1121 5025 4910 882 225 0 0 chr4 119311779 119311939 -83016408 + MLT1A1 LTR MaLR 202 361 -4 991 239 146 6 chr4 119312511 119312841 -83015506 + HAL1b LINE L1 221 596 -752 999 258 149 20 chr4 119313936 119314231 -83014116 + LTR16B LTR ERVL 1 333 -131 701 342 9 0 chr4 119314508 119314730 -83013617 - MIR SINE MIR -38 224 1 467 349 128 39 chr4 119314840 119314908 -83013439 - L2 LINE L2 0 3272 3211 1955 115 97 26 chr4 119314908 119315248 -83013099 - THE1B LTR MaLR 0 364 1 467 349 128 39 chr4 119315248 119315809 -83012538 - L2 LINE L2 -61 3211 2266 1586 147 118 42 chr4 119315945 119316258 -83012089 + MER1B DNA MER1_type 1 337 0 220 216 0 0 chr4 119316962 119317013 -83011334 + T-rich Low_complexity Low_complexity 1 51 0 331 299 61 24 chr4 119317861 119318025 -83010322 - MIR SINE MIR -59 203 34 237 159 29 14 chr4 119319264 119319333 -83009014 + (TA)n Simple_repeat Simple_repeat 2 71 0 1112 288 178 11 chr4 119321267 119321712 -83006635 + MER69 DNA AcHobo 3 521 -2005 450 103 35 11 chr4 119321712 119321799 -83006548 + GA-rich Low_complexity Low_complexity 4 92 0 456 192 0 0 chr4 119321940 119322039 -83006308 + GA-rich Low_complexity Low_complexity 2 100 0 1330 293 54 14 chr4 119322039 119322554 -83005793 + MER69 DNA AcHobo 508 1043 -1483 * 2323 219 113 35 chr4 119322542 119323470 -83004877 + MER69 DNA AcHobo 1519 2519 -7 189 298 113 16 chr4 119323709 119323833 -83004514 + L3b LINE CR1 1298 1433 -150 21 36 0 0 chr4 119324363 119324391 -83003956 + AT_rich Low_complexity Low_complexity 1 28 0 375 274 51 38 chr4 119324529 119324686 -83003661 - MLT1J LTR MaLR -3 508 350 254 310 82 65 chr4 119324813 119325045 -83003302 - MLT1J LTR MaLR -191 320 85 328 414 59 0 chr4 119326802 119326971 -83001376 - L3 LINE CR1 -374 1203 1025 292 286 116 18 chr4 119327097 119327209 -83001138 + L2 LINE L2 3146 3268 -4 309 316 99 96 chr4 119328108 119328744 -82999603 + L1MEd LINE L1 242 879 -5240 200 109 47 16 chr4 119328822 119328886 -82999461 + (TA)n Simple_repeat Simple_repeat 1 66 0 393 299 133 13 chr4 119329028 119329560 -82998787 + L1MEd LINE L1 2113 2708 -3421 307 267 47 87 chr4 119329630 119329780 -82998567 - L2 LINE L2 -558 2756 2613 279 54 0 0 chr4 119330593 119330630 -82997717 + (TA)n Simple_repeat Simple_repeat 2 38 0 1884 146 7 3 chr4 119331520 119331814 -82996533 - AluSx SINE Alu -17 295 1 219 273 68 23 chr4 119332098 119332186 -82996161 - L2 LINE L2 0 3313 3222 22 0 0 0 chr4 119332694 119332716 -82995631 + AT_rich Low_complexity Low_complexity 1 22 0 198 292 0 83 chr4 119333047 119333143 -82995204 - MIR SINE MIR -71 191 104 186 310 129 26 chr4 119333903 119334019 -82994328 + L2 LINE L2 3134 3261 -11 36 40 0 0 chr4 119334028 119334078 -82994269 + AT_rich Low_complexity Low_complexity 1 50 0 749 143 48 0 chr4 119334176 119334302 -82994045 - AluSq/x SINE Alu -181 132 1 916 188 78 0 chr4 119336311 119336503 -82991844 + L1PA16 LINE L1 5960 6166 0 662 219 79 66 chr4 119337147 119337375 -82990972 + MER112 DNA MER1_type 24 254 -6 293 297 18 0 chr4 119337890 119338001 -82990346 + (TA)n Simple_repeat Simple_repeat 1 113 0 180 0 0 0 chr4 119338232 119338252 -82990095 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1873 154 3 3 chr4 119338357 119338669 -82989678 + AluJb SINE Alu 1 312 0 785 170 7 0 chr4 119338730 119338871 -82989476 + AluJb SINE Alu 171 312 0 1680 195 21 18 chr4 119339106 119339434 -82988913 + MER58B DNA MER1_type 9 337 -4 21 0 0 0 chr4 119339744 119339765 -82988582 + AT_rich Low_complexity Low_complexity 1 21 0 856 213 157 62 chr4 119340635 119340973 -82987374 + L1MC5 LINE L1 6697 7066 -895 211 278 0 42 chr4 119341886 119341958 -82986389 + MIR SINE MIR 95 163 -99 374 282 101 48 chr4 119342101 119342289 -82986058 - MIR SINE MIR -48 214 17 262 115 39 0 chr4 119342326 119342378 -82985969 + GA-rich Low_complexity Low_complexity 1 54 0 420 318 132 11 chr4 119343926 119344115 -82984232 - MIR SINE MIR -35 227 16 875 196 17 0 chr4 119344657 119344830 -82983517 - FRAM SINE Alu 0 176 1 203 317 98 41 chr4 119345152 119345275 -82983072 - L2 LINE L2 -22 3291 3162 23 0 0 0 chr4 119345676 119345699 -82982648 + AT_rich Low_complexity Low_complexity 1 23 0 265 323 98 15 chr4 119346118 119346251 -82982096 + MIR SINE MIR 48 191 -71 3035 194 47 2 chr4 119346816 119347436 -82980911 + L1MB5 LINE L1 5515 6162 -12 284 235 289 58 chr4 119347494 119347788 -82980559 - Charlie7 DNA MER1_type -132 2480 2119 1316 241 115 34 chr4 119347891 119348501 -82979846 - Charlie7 DNA MER1_type -525 2087 1429 545 246 161 29 chr4 119348504 119348784 -82979563 - Charlie7 DNA MER1_type -2295 317 1 1474 173 45 42 chr4 119349004 119349316 -82979031 - AluSp SINE Alu 0 313 1 21 0 0 0 chr4 119349346 119349367 -82978980 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr4 119349561 119349597 -82978750 + AT_rich Low_complexity Low_complexity 1 36 0 1334 194 36 0 chr4 119349763 119350015 -82978332 - AluJb SINE Alu -51 261 1 582 275 72 19 chr4 119350696 119350903 -82977444 + L2 LINE L2 3095 3312 -1 239 62 0 0 chr4 119351104 119351136 -82977211 - AluSp SINE Alu -15 288 257 2034 82 4 0 chr4 119351170 119351426 -82976921 - AluSp SINE Alu -56 257 1 579 336 63 5 chr4 119351848 119352071 -82976276 + MIR SINE MIR 15 250 -12 266 0 29 0 chr4 119352129 119352163 -82976184 + (TG)n Simple_repeat Simple_repeat 2 36 0 237 244 33 11 chr4 119352925 119353015 -82975332 + (TA)n Simple_repeat Simple_repeat 1 92 0 183 129 0 0 chr4 119353267 119353298 -82975049 + (CCTTG)n Simple_repeat Simple_repeat 5 35 0 347 0 0 23 chr4 119353799 119353843 -82974504 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1834 97 0 0 chr4 119353846 119354084 -82974263 - AluSg SINE Alu -26 284 47 5227 29 0 2 chr4 119354146 119354761 -82973586 - L1PA4 LINE L1 -7 6148 5535 268 79 0 0 chr4 119354761 119354799 -82973548 + L1PA4 LINE L1 5496 5533 -622 220 393 62 21 chr4 119355185 119355330 -82973017 + L2 LINE L2 3117 3267 -5 205 241 35 0 chr4 119355420 119355478 -82972869 + A-rich Low_complexity Low_complexity 2 61 0 624 78 16 61 chr4 119355838 119356082 -82972265 + (TA)n Simple_repeat Simple_repeat 1 233 0 288 77 0 0 chr4 119356136 119356175 -82972172 + (CA)n Simple_repeat Simple_repeat 2 40 0 196 414 54 27 chr4 119356300 119356411 -82971936 + L3 LINE CR1 27 140 -1437 21 57 0 0 chr4 119356685 119356720 -82971627 + AT_rich Low_complexity Low_complexity 1 35 0 249 298 53 103 chr4 119356835 119357117 -82971230 + L2 LINE L2 2988 3255 -58 335 298 101 21 chr4 119357501 119357689 -82970658 + LTR67 LTR ERVL 355 557 0 330 240 40 104 chr4 119358544 119358669 -82969678 - L2 LINE L2 0 3313 3197 229 291 109 100 chr4 119358777 119359117 -82969230 + L3 LINE CR1 742 1084 -493 485 349 192 7 chr4 119359176 119359583 -82968764 + L3 LINE CR1 1094 1575 -2 26 50 0 0 chr4 119361267 119361307 -82967040 + AT_rich Low_complexity Low_complexity 1 40 0 678 288 68 0 chr4 119362815 119362992 -82965355 + MIR SINE MIR 5 193 -69 2065 123 0 10 chr4 119365177 119365477 -82962870 - AluSx SINE Alu -15 297 1 23 54 0 0 chr4 119366164 119366201 -82962146 + AT_rich Low_complexity Low_complexity 1 37 0 231 285 49 28 chr4 119367040 119367184 -82961163 + L1ME LINE L1 2676 2822 -3324 26 30 0 0 chr4 119367246 119367279 -82961068 + AT_rich Low_complexity Low_complexity 1 33 0 323 279 81 12 chr4 119367283 119367444 -82960903 + L1ME LINE L1 5256 5427 -2381 456 291 93 20 chr4 119367537 119367784 -82960563 + L1ME LINE L1 5538 5802 -319 717 293 62 9 chr4 119369149 119369374 -82958973 - MIR SINE MIR -17 245 9 27 29 0 0 chr4 119370301 119370335 -82958012 + AT_rich Low_complexity Low_complexity 1 34 0 27 29 0 0 chr4 119370365 119370399 -82957948 + AT_rich Low_complexity Low_complexity 1 34 0 319 253 0 0 chr4 119370489 119370572 -82957775 + L1 LINE L1 2350 2432 -3714 215 30 0 30 chr4 119370623 119370656 -82957691 + (TG)n Simple_repeat Simple_repeat 2 33 0 267 222 139 0 chr4 119373090 119373162 -82955185 + L2 LINE L2 3223 3304 -9 272 330 174 33 chr4 119374928 119375776 -82952571 - L2 LINE L2 -1359 1955 988 22 35 0 0 chr4 119375979 119376008 -82952339 + AT_rich Low_complexity Low_complexity 1 29 0 212 229 0 36 chr4 119376510 119376593 -82951754 + (TAA)n Simple_repeat Simple_repeat 3 82 0 414 100 0 0 chr4 119377195 119377255 -82951092 + (CA)n Simple_repeat Simple_repeat 1 60 0 217 302 26 0 chr4 119377318 119377394 -82950953 + L2 LINE L2 3174 3276 -18 1196 160 174 24 chr4 119377762 119378049 -82950298 - MER44D DNA MER2_type -3 606 7 421 264 99 60 chr4 119378186 119378387 -82949960 - L2 LINE L2 -13 3300 3092 * 528 321 41 15 chr4 119378355 119378447 -82949900 - L2 LINE L2 -437 2877 2789 396 266 84 75 chr4 119378447 119378781 -82949566 + MER46C DNA MER2_type 2 338 0 528 321 41 15 chr4 119378781 119378884 -82949463 - L2 LINE L2 -525 2789 2677 22 80 0 0 chr4 119378895 119378945 -82949402 + AT_rich Low_complexity Low_complexity 1 50 0 1976 123 0 3 chr4 119379214 119379498 -82948849 + AluSx SINE Alu 1 283 -29 30 0 0 0 chr4 119379542 119379572 -82948775 + AT_rich Low_complexity Low_complexity 1 30 0 222 329 0 13 chr4 119380114 119380193 -82948154 - L2 LINE L2 -8 3305 3228 376 247 102 81 chr4 119382075 119382233 -82946114 - MIR SINE MIR 0 262 98 4748 22 9 0 chr4 119382233 119382789 -82945558 + L1PA4 LINE L1 5595 6155 0 376 247 102 81 chr4 119382789 119382816 -82945531 - MIR SINE MIR -164 98 73 292 293 12 0 chr4 119382811 119382893 -82945454 + L2 LINE L2 3198 3280 -33 * 229 258 136 15 chr4 119383816 119383948 -82944399 - MER113 DNA MER1_type? -85 436 289 282 286 13 0 chr4 119383981 119384058 -82944289 + L2 LINE L2 3190 3267 -5 504 0 0 0 chr4 119384076 119384132 -82944215 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 21 36 0 0 chr4 119384458 119384486 -82943861 + AT_rich Low_complexity Low_complexity 1 28 0 2558 221 56 3 chr4 119386626 119387291 -82941056 + L1 LINE L1 2986 3685 -2461 571 106 0 0 chr4 119387291 119387376 -82940971 + L1MA3 LINE L1 6215 6299 -6 16388 202 38 32 chr4 119388483 119393539 -82934808 - L1PA15 LINE L1 -16 6800 1689 696 213 0 22 chr4 119393539 119393675 -82934672 + FLAM_C SINE Alu 1 133 0 16388 202 38 32 chr4 119393675 119394323 -82934024 - L1PA15 LINE L1 -5127 1689 1047 245 302 32 16 chr4 119394902 119395028 -82933319 - L1MC4 LINE L1 -1 8041 7914 194 176 20 0 chr4 119395079 119395130 -82933217 + (TA)n Simple_repeat Simple_repeat 1 52 0 366 256 61 78 chr4 119395359 119395589 -82932758 + L2 LINE L2 2629 2854 -460 378 306 182 45 chr4 119395679 119395970 -82932377 + L2 LINE L2 2954 3284 -29 881 245 134 36 chr4 119396155 119396636 -82931711 - MLT1F LTR MaLR 0 542 7 27 0 0 0 chr4 119396761 119396788 -82931559 + AT_rich Low_complexity Low_complexity 1 27 0 833 294 20 4 chr4 119396793 119397045 -82931302 - MIR SINE MIR -6 256 1 247 146 0 0 chr4 119398684 119398725 -82929622 - MER45A DNA AcHobo 0 178 138 324 164 0 0 chr4 119400516 119400583 -82927764 + CT-rich Low_complexity Low_complexity 2 68 0 378 42 0 0 chr4 119401051 119401099 -82927248 + (TC)n Simple_repeat Simple_repeat 1 48 0 731 224 59 12 chr4 119401537 119401707 -82926640 - MER45A DNA AcHobo 0 178 1 2095 119 0 13 chr4 119403087 119403390 -82924957 - AluSx SINE Alu -13 299 1 23 0 0 0 chr4 119403588 119403611 -82924736 + AT_rich Low_complexity Low_complexity 1 23 0 456 233 0 11 chr4 119403719 119403809 -82924538 - L2 LINE L2 0 3313 3225 3182 158 43 32 chr4 119404122 119404166 -82924181 + L1MB4 LINE L1 5396 5438 -742 1906 132 20 13 chr4 119404166 119404469 -82923878 + AluSq SINE Alu 1 305 -8 3182 158 43 32 chr4 119404469 119405118 -82923229 + L1MB4 LINE L1 5438 6097 -83 3057 176 6 25 chr4 119405122 119405650 -82922697 + Tigger7 DNA MER2_type 4 521 -212 492 188 0 0 chr4 119405661 119405746 -82922601 + Tigger7 DNA MER2_type 2503 2587 0 28 48 0 0 chr4 119407017 119407059 -82921288 + AT_rich Low_complexity Low_complexity 1 42 0 289 271 24 35 chr4 119410956 119411041 -82917306 - MER5A DNA MER1_type -10 179 96 268 277 12 36 chr4 119410970 119411053 -82917294 + MER5A DNA MER1_type 35 115 -74 * 22 35 0 0 chr4 119411281 119411310 -82917037 + AT_rich Low_complexity Low_complexity 1 29 0 349 264 75 28 chr4 119412497 119412603 -82915744 + MER5A DNA MER1_type 14 124 -65 345 181 12 36 chr4 119414005 119414088 -82914259 + MIR SINE MIR 69 149 -113 243 0 0 0 chr4 119414093 119414120 -82914227 + (TG)n Simple_repeat Simple_repeat 1 27 0 674 233 57 17 chr4 119414189 119414527 -82913820 - MER110A LTR ERV1 0 468 92 331 279 63 18 chr4 119415166 119415277 -82913070 + MIR SINE MIR 14 129 -133 38 22 0 0 chr4 119420373 119420418 -82907929 + AT_rich Low_complexity Low_complexity 1 45 0 398 208 271 35 chr4 119420817 119420961 -82907386 - MER45A DNA AcHobo 0 178 1 1125 191 86 0 chr4 119423100 119423320 -82905027 + MER8 DNA MER2_type 1 239 0 2314 134 67 8 chr4 119424115 119424517 -82903830 - MSTB LTR MaLR 0 426 1 429 289 48 16 chr4 119424721 119424908 -82903439 + L3 LINE CR1 618 810 -767 563 283 207 33 chr4 119424948 119425610 -82902737 + L1ME4a LINE L1 4518 5294 -852 744 244 45 10 chr4 119425837 119426038 -82902309 + MER3 DNA MER1_type 2 209 0 2028 130 52 19 chr4 119426069 119426431 -82901916 - THE1C LTR MaLR -1 374 1 355 312 130 0 chr4 119426563 119426810 -82901537 + L1ME4a LINE L1 5614 5892 -229 2176 102 0 44 chr4 119427194 119427509 -82900838 - AluSq SINE Alu -12 301 1 25 0 0 0 chr4 119428518 119428543 -82899804 + AT_rich Low_complexity Low_complexity 1 25 0 395 271 231 20 chr4 119429230 119429429 -82898918 - MIR SINE MIR -17 245 5 426 20 0 0 chr4 119430681 119430732 -82897615 + (TG)n Simple_repeat Simple_repeat 1 51 0 237 83 0 0 chr4 119430732 119430768 -82897579 + (GA)n Simple_repeat Simple_repeat 1 36 0 1781 241 100 29 chr4 119432818 119433369 -82894978 + MER77 LTR ERV1 54 698 -4 2448 68 0 31 chr4 119433474 119433795 -82894552 + AluY SINE Alu 1 311 0 253 340 30 20 chr4 119433941 119434041 -82894306 + MIR SINE MIR 31 131 -77 1082 172 11 0 chr4 119434105 119434291 -82894056 - MER5A DNA MER1_type 0 189 2 23 54 0 0 chr4 119436842 119436879 -82891468 + AT_rich Low_complexity Low_complexity 1 37 0 309 367 133 0 chr4 119436944 119437094 -82891253 - L2 LINE L2 -1 3271 3102 222 91 0 0 chr4 119439409 119439442 -82888905 + (TC)n Simple_repeat Simple_repeat 2 34 0 * 402 93 67 13 chr4 119439441 119439591 -82888756 + (TA)n Simple_repeat Simple_repeat 1 158 0 2597 183 48 70 chr4 119439826 119440536 -82887811 + LTR8A LTR ERV1 34 727 0 1499 248 77 20 chr4 119440716 119441292 -82887055 + MLT1E LTR MaLR 3 593 0 4912 166 50 23 chr4 119441748 119443254 -82885093 + L1MB3 LINE L1 4647 6183 0 238 344 129 0 chr4 119443467 119443560 -82884787 + MIR SINE MIR 37 141 -67 642 329 58 26 chr4 119443652 119443962 -82884385 - MLT1J2 LTR MaLR -130 320 1 2172 90 0 13 chr4 119444050 119444350 -82883997 + AluSq SINE Alu 3 298 -15 327 288 27 27 chr4 119445814 119445925 -82882422 + MLT1J2 LTR MaLR 1 111 -339 499 244 23 79 chr4 119446041 119446248 -82882099 + LTR41 LTR ERVL 1 220 -575 1764 158 3 14 chr4 119446277 119446562 -82881785 - AluJb SINE Alu -30 282 1 673 210 6 17 chr4 119446787 119446963 -82881384 + LTR41 LTR ERVL 585 758 -15 327 305 191 50 chr4 119447272 119447446 -82880901 - L1 LINE L1 -1591 4555 4407 1604 203 21 0 chr4 119447446 119447737 -82880610 - AluJb SINE Alu -15 297 1 327 305 191 50 chr4 119447737 119448001 -82880346 - L1 LINE L1 -1739 4407 4055 1883 131 107 3 chr4 119448375 119448711 -82879636 + THE1C LTR MaLR 1 371 -4 468 272 101 25 chr4 119449162 119449320 -82879027 + L2 LINE L2 264 433 -2881 1216 135 0 0 chr4 119449439 119449617 -82878730 - AluSg/x SINE Alu -2 310 133 9148 86 28 12 chr4 119449629 119450895 -82877452 - HSMAR1 DNA Mariner 0 1287 1 548 277 11 11 chr4 119451345 119451522 -82876825 - MER5B DNA MER1_type -1 177 1 853 263 81 47 chr4 119452653 119453064 -82875283 - L1ME3A LINE L1 -34 6136 5710 258 279 13 13 chr4 119453155 119453234 -82875113 - L1ME3A LINE L1 -461 5701 5623 190 383 123 34 chr4 119453488 119453723 -82874624 - L2 LINE L2 -494 2820 2565 21 0 0 0 chr4 119454090 119454111 -82874236 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 119454810 119454838 -82873509 + AT_rich Low_complexity Low_complexity 1 28 0 2565 196 15 2 chr4 119454846 119455301 -82873046 - LTR32 LTR ERVL 0 471 11 21 36 0 0 chr4 119455902 119455930 -82872417 + AT_rich Low_complexity Low_complexity 1 28 0 250 378 181 4 chr4 119456657 119456911 -82871436 + L3 LINE CR1 48 346 -1231 2576 125 0 0 chr4 119457550 119457909 -82870438 + THE1B LTR MaLR 1 359 -5 269 261 243 0 chr4 119458339 119458450 -82869897 + L2 LINE L2 3160 3297 -16 22 0 0 0 chr4 119458786 119458808 -82869539 + AT_rich Low_complexity Low_complexity 1 22 0 2138 118 3 7 chr4 119459436 119459741 -82868606 + AluSg SINE Alu 3 306 -4 184 360 78 23 chr4 119460292 119460600 -82867747 + L2 LINE L2 635 959 -2355 6768 130 53 14 chr4 119460654 119461803 -82866544 + Tigger3b DNA MER2_type 1 1194 -37 1216 260 51 6 chr4 119461902 119462330 -82866017 - MLT1J LTR MaLR -8 503 1 654 264 12 12 chr4 119463333 119463500 -82864847 - MER63A DNA MER1_type 0 210 44 2207 117 0 25 chr4 119463908 119464225 -82864122 - AluSq SINE Alu -4 309 1 1155 208 88 20 chr4 119465745 119466087 -82862260 - MLT1A1 LTR MaLR 0 365 1 26 50 0 0 chr4 119466361 119466401 -82861946 + AT_rich Low_complexity Low_complexity 1 40 0 315 0 0 0 chr4 119466835 119466870 -82861477 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 2099 112 4 0 chr4 119466870 119467147 -82861200 - AluSg SINE Alu -32 278 1 463 148 64 0 chr4 119467479 119467752 -82860595 + (TA)n Simple_repeat Simple_repeat 1 290 0 26 0 0 0 chr4 119467864 119467890 -82860457 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr4 119468102 119468131 -82860216 + AT_rich Low_complexity Low_complexity 1 29 0 382 281 53 16 chr4 119468177 119468579 -82859768 + L1ME LINE L1 5332 5779 -342 2894 80 61 0 chr4 119469129 119469540 -82858807 + L1PA13 LINE L1 5717 6152 -11 225 136 17 68 chr4 119470262 119470321 -82858026 + GA-rich Low_complexity Low_complexity 5 60 0 25 31 0 0 chr4 119472179 119472211 -82856136 + AT_rich Low_complexity Low_complexity 1 32 0 1667 279 67 30 chr4 119473143 119473436 -82854911 + L1MC5 LINE L1 6536 6816 -1206 1656 270 42 36 chr4 119473436 119474025 -82854322 - MLT1E LTR MaLR 0 593 1 1667 279 67 30 chr4 119474025 119474675 -82853672 + L1MC5 LINE L1 6816 7495 -527 497 281 5 11 chr4 119475255 119475440 -82852907 + L1MC4 LINE L1 7707 7890 -152 30 93 0 0 chr4 119476067 119476153 -82852194 + AT_rich Low_complexity Low_complexity 1 86 0 208 241 86 35 chr4 119477251 119477309 -82851038 - L2 LINE L2 -2 3270 3210 209 411 0 0 chr4 119477384 119477491 -82850856 - L2 LINE L2 -285 2987 2881 333 68 0 0 chr4 119477808 119477852 -82850495 + (A)n Simple_repeat Simple_repeat 1 44 0 462 120 0 0 chr4 119478054 119478129 -82850218 - AluS SINE Alu -6 303 229 291 294 63 14 chr4 119479000 119479143 -82849204 + MER103 DNA DNA 8 157 -9 253 309 49 12 chr4 119479358 119479439 -82848908 + MER5A DNA MER1_type 103 186 -3 411 57 0 0 chr4 119479670 119479723 -82848624 + AluSp/q SINE Alu 238 290 -23 7250 75 2 2 chr4 119479723 119481458 -82846889 - L1PA6 LINE L1 -16 6138 4403 892 294 49 25 chr4 119481708 119482034 -82846313 - L2 LINE L2 -3 3310 2977 325 418 21 17 chr4 119482170 119482457 -82845890 + L2 LINE L2 2656 2943 -371 9658 81 30 9 chr4 119482665 119484765 -82843582 - L1PA7 LINE L1 -1 6153 3994 225 217 235 52 chr4 119485085 119485200 -82843147 - L2 LINE L2 -5 3308 3173 183 156 0 0 chr4 119485218 119485250 -82843097 + GA-rich Low_complexity Low_complexity 3 34 0 1878 90 30 4 chr4 119485290 119485556 -82842791 + AluSc SINE Alu 1 273 -36 204 40 0 0 chr4 119485556 119485581 -82842766 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 264 203 0 17 chr4 119485779 119485838 -82842509 - LTR16A LTR ERVL -72 378 321 434 290 33 43 chr4 119486434 119486734 -82841613 - L1ME LINE L1 -558 5606 5308 2760 211 32 62 chr4 119488330 119489168 -82839179 + L1ME1 LINE L1 5345 6161 -5 296 346 29 0 chr4 119489367 119489471 -82838876 - MIR SINE MIR -26 236 130 247 241 190 0 chr4 119490005 119490084 -82838263 - MER63 DNA MER1_type -336 726 7 418 223 50 132 chr4 119490344 119490564 -82837783 - L2 LINE L2 -8 3305 3104 21 57 0 0 chr4 119492429 119492464 -82835883 + AT_rich Low_complexity Low_complexity 1 35 0 442 283 94 17 chr4 119494178 119494360 -82833987 - MIR SINE MIR -65 143 8 953 114 0 0 chr4 119494494 119494626 -82833721 + AluSg SINE Alu 1 132 -178 31 59 0 35 chr4 119495370 119495455 -82832892 + AT_rich Low_complexity Low_complexity 1 82 0 353 289 181 0 chr4 119495498 119495647 -82832700 + MIR SINE MIR 81 256 -6 190 204 91 0 chr4 119498269 119498313 -82830034 - MIR SINE MIR -66 142 95 1956 121 61 7 chr4 119499868 119500165 -82828182 + AluSq SINE Alu 1 313 0 2142 91 0 0 chr4 119501502 119501777 -82826570 - AluSg SINE Alu -35 275 1 942 282 199 25 chr4 119501779 119501981 -82826366 - L2 LINE L2 -323 2990 2824 835 186 25 0 chr4 119501981 119502142 -82826205 + FRAM SINE Alu 1 165 -1 942 282 199 25 chr4 119502142 119502632 -82825715 - L2 LINE L2 -489 2824 2081 221 282 165 0 chr4 119503536 119503639 -82824708 + MIR SINE MIR 73 192 -70 408 377 26 0 chr4 119504037 119504191 -82824156 - MIR SINE MIR -74 188 31 239 337 20 10 chr4 119504213 119504311 -82824036 + MER69 DNA AcHobo 1 99 -1127 1531 163 58 22 chr4 119504340 119504617 -82823730 + AluJb SINE Alu 22 308 -4 1448 202 158 16 chr4 119504617 119505123 -82823224 + MER69 DNA AcHobo 1949 2526 0 184 308 197 43 chr4 119505546 119505663 -82822684 - MIR3 SINE MIR -10 198 64 208 218 26 13 chr4 119505776 119505854 -82822493 + (TA)n Simple_repeat Simple_repeat 2 80 0 2246 91 3 3 chr4 119506510 119506806 -82821541 + AluSg SINE Alu 1 296 -14 1481 160 11 11 chr4 119507554 119507823 -82820524 - L1PA16 LINE L1 -5 6161 5893 1262 134 13 13 chr4 119508008 119508240 -82820107 - L1MA4 LINE L1 -1 6299 6068 217 143 36 18 chr4 119508399 119508455 -82819892 + (TTTG)n Simple_repeat Simple_repeat 1 57 0 1637 128 23 4 chr4 119508479 119508737 -82819610 - AluJb SINE Alu -18 294 32 1747 168 14 20 chr4 119508737 119509034 -82819313 - AluJb SINE Alu -17 295 1 28 0 0 0 chr4 119509040 119509068 -82819279 + AT_rich Low_complexity Low_complexity 1 28 0 842 275 0 14 chr4 119510025 119510232 -82818115 + MER63A DNA MER1_type 1 204 -6 224 259 17 0 chr4 119510744 119510802 -82817545 + L2 LINE L2 3210 3268 -4 486 0 0 0 chr4 119511212 119511266 -82817081 + (TG)n Simple_repeat Simple_repeat 2 55 0 186 103 0 0 chr4 119511587 119511616 -82816731 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 186 43 0 0 chr4 119512284 119512307 -82816040 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 307 174 0 41 chr4 119514622 119514720 -82813627 + T-rich Low_complexity Low_complexity 4 97 0 1568 145 49 3 chr4 119515448 119515752 -82812595 + MER33 DNA MER1_type 6 323 -1 22 35 0 0 chr4 119516233 119516262 -82812085 + AT_rich Low_complexity Low_complexity 1 29 0 263 213 13 0 chr4 119518015 119518090 -82810257 + CT-rich Low_complexity Low_complexity 1 76 0 360 327 25 43 chr4 119519189 119519351 -82808996 - MIR SINE MIR -93 169 11 188 287 210 13 chr4 119519715 119519872 -82808475 + L2 LINE L2 3121 3308 -5 21 0 0 0 chr4 119520126 119520147 -82808200 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 119520285 119520315 -82808032 + AT_rich Low_complexity Low_complexity 1 30 0 298 376 16 0 chr4 119520461 119520586 -82807761 + L2 LINE L2 3180 3306 -7 205 240 0 20 chr4 119521059 119521109 -82807238 - L2 LINE L2 -668 2646 2598 2567 226 42 10 chr4 119522440 119523038 -82805309 + MLT1E2 LTR MaLR 1 617 -9 562 233 94 78 chr4 119523270 119523347 -82805000 - MER5A DNA MER1_type 0 189 115 1430 175 39 52 chr4 119523347 119523633 -82804714 + AluJo SINE Alu 1 282 -30 611 23 0 23 chr4 119523633 119523719 -82804628 + (TAAAA)n Simple_repeat Simple_repeat 1 130 0 562 233 94 78 chr4 119523719 119523820 -82804527 - MER5A DNA MER1_type -74 115 7 731 288 63 18 chr4 119524126 119524785 -82803562 - L1 LINE L1 -2701 3445 2749 848 175 0 0 chr4 119526327 119526470 -82801877 + FLAM_C SINE Alu 1 143 0 576 211 26 0 chr4 119527304 119527418 -82800929 - L2 LINE L2 -1 3312 3196 461 271 85 0 chr4 119527464 119527582 -82800765 - MER69 DNA AcHobo -2398 128 1 309 331 50 54 chr4 119527721 119527981 -82800366 + L2 LINE L2 2887 3145 -168 1397 135 117 0 chr4 119527988 119528210 -82800137 - AluSc SINE Alu -12 297 50 356 343 55 20 chr4 119528226 119528372 -82799975 + L2 LINE L2 3122 3272 0 279 236 20 19 chr4 119530670 119530760 -82797587 + CT-rich Low_complexity Low_complexity 1 90 0 339 200 0 78 chr4 119531305 119531395 -82796952 - L2 LINE L2 -1 3271 3189 321 325 51 2 chr4 119531453 119531626 -82796721 + MIR SINE MIR 30 209 -53 36 40 0 0 chr4 119531712 119531762 -82796585 + AT_rich Low_complexity Low_complexity 1 50 0 328 141 0 31 chr4 119533551 119533615 -82794732 + L1MC1 LINE L1 6145 6206 -127 * 980 146 0 6 chr4 119533597 119533762 -82794585 - L1MC/D LINE L1 -884 5449 5286 43095 31 21 1 chr4 119533770 119539800 -82788547 - L1HS LINE L1 0 6155 3 2742 220 31 10 chr4 119539800 119540513 -82787834 - L1MC/D LINE L1 -849 5297 4570 845 286 48 13 chr4 119540541 119540875 -82787472 + MER21B LTR ERV1 13 378 -485 567 305 44 26 chr4 119540964 119541190 -82787157 - MLT1K LTR MaLR 0 588 359 937 320 74 11 chr4 119541201 119541544 -82786803 + L1MEc LINE L1 1039 1359 -5037 429 116 0 0 chr4 119541544 119541613 -82786734 + (CA)n Simple_repeat Simple_repeat 2 70 0 937 320 74 11 chr4 119541613 119541998 -82786349 + L1MEc LINE L1 1359 1813 -4583 857 264 83 50 chr4 119542299 119542879 -82785468 + L1MEc LINE L1 2210 2808 -3407 1022 136 47 51 chr4 119592880 119593094 -82735253 + THE1C LTR MaLR 163 375 0 588 325 15 5 chr4 119593230 119593430 -82734917 - MIR SINE MIR -59 203 2 198 209 0 0 chr4 119593827 119593870 -82734477 + GA-rich Low_complexity Low_complexity 3 45 0 553 224 16 0 chr4 119594263 119594388 -82733959 - MER45 DNA AcHobo -826 127 1 5756 128 41 4 chr4 119595775 119596834 -82731513 + L1PBa LINE L1 1506 2603 -4260 23 0 0 0 chr4 119597087 119597110 -82731237 + AT_rich Low_complexity Low_complexity 1 23 0 3748 159 55 34 chr4 119597309 119597596 -82730751 - L1MB7 LINE L1 -19 6165 5885 7374 43 0 0 chr4 119597596 119598706 -82729641 - L1PA5 LINE L1 0 6154 5046 3748 159 55 34 chr4 119598706 119599458 -82728889 - L1MB7 LINE L1 -299 5885 5108 22 35 0 0 chr4 119599583 119599612 -82728735 + AT_rich Low_complexity Low_complexity 1 29 0 1199 105 0 58 chr4 119600299 119600471 -82727876 - AluSx SINE Alu -150 162 1 547 216 91 11 chr4 119600721 119600897 -82727450 - HAL1 LINE L1 -876 1631 1442 323 242 16 81 chr4 119600899 119601023 -82727324 - HAL1 LINE L1 -1399 1108 993 2210 118 0 0 chr4 119601031 119601328 -82727019 - AluSg SINE Alu -13 297 1 1725 172 25 3 chr4 119601533 119601818 -82726529 - AluJb SINE Alu -11 301 11 509 283 92 40 chr4 119601876 119602222 -82726125 - HAL1 LINE L1 -1886 621 258 521 278 42 25 chr4 119603231 119603589 -82724758 + LTR33 LTR ERVL 119 513 -8 2066 115 11 0 chr4 119604968 119605254 -82723093 + AluSx SINE Alu 1 289 -23 351 294 38 31 chr4 119605533 119605693 -82722654 + L1ME3 LINE L1 5732 5892 -270 1752 123 4 38 chr4 119605849 119606110 -82722237 + AluSx SINE Alu 42 293 -19 247 328 102 32 chr4 119606110 119606296 -82722051 + L2 LINE L2 2338 2536 -778 790 217 48 5 chr4 119606432 119606621 -82721726 - MER3 DNA MER1_type -1 208 12 1620 155 0 0 chr4 119606754 119606993 -82721354 - AluSx SINE Alu -19 293 55 669 82 0 0 chr4 119606993 119607091 -82721256 - L1MA3 LINE L1 -315 5990 5893 330 226 107 0 chr4 119607091 119607175 -82721172 - AluSg SINE Alu -207 93 1 261 274 15 132 chr4 119607193 119607390 -82720957 + L2 LINE L2 2873 3046 -226 1503 86 18 5 chr4 119608420 119608642 -82719705 - L1MA3 LINE L1 0 6305 6081 2699 222 89 45 chr4 119608743 119609865 -82718482 - L1PBa LINE L1 -5459 1404 81 263 270 0 0 chr4 119610239 119610313 -82718034 + (TG)n Simple_repeat Simple_repeat 2 75 0 199 250 0 0 chr4 119610365 119610409 -82717938 + L2 LINE L2 3268 3311 -2 646 240 29 11 chr4 119612733 119612908 -82715439 - MER5B DNA MER1_type 0 178 1 547 276 114 31 chr4 119613015 119613243 -82715104 - MIR SINE MIR -4 258 12 734 205 13 19 chr4 119613246 119613402 -82714945 + MER106B DNA MER1_type 1 155 -904 23 0 0 0 chr4 119613404 119613427 -82714920 + AT_rich Low_complexity Low_complexity 1 23 0 223 279 0 0 chr4 119615081 119615124 -82713223 - L2 LINE L2 -16 3256 3214 369 285 94 79 chr4 119615351 119615864 -82712483 - MLT1K LTR MaLR -23 565 2 341 211 240 0 chr4 119615876 119615980 -82712367 - MER5A DNA MER1_type -19 170 42 341 294 39 0 chr4 119618164 119618266 -82710081 - L2 LINE L2 -25 3247 3142 2443 225 61 86 chr4 119619056 119619906 -82708441 + MER45C DNA AcHobo 125 953 0 26 0 0 0 chr4 119620320 119620346 -82708001 + AT_rich Low_complexity Low_complexity 1 26 0 2063 120 7 10 chr4 119620346 119620637 -82707710 - AluSx SINE Alu -22 290 1 437 316 78 44 chr4 119621607 119622040 -82706307 - L2 LINE L2 0 3313 2667 23 0 0 0 chr4 119622210 119622233 -82706114 + AT_rich Low_complexity Low_complexity 1 23 0 3614 128 70 19 chr4 119622482 119623445 -82704902 - MER11A LTR ERVK 0 1266 1 226 350 68 8 chr4 119623585 119623702 -82704645 - L2 LINE L2 -7 3265 3142 232 186 0 0 chr4 119624540 119624583 -82703764 - L1M3 LINE L1 -561 5619 5577 1652 129 0 0 chr4 119624614 119624846 -82703501 + AluJb SINE Alu 1 232 -80 1671 199 8 45 chr4 119626327 119626704 -82701643 - MLT1A1 LTR MaLR -2 363 1 287 377 14 7 chr4 119626762 119626908 -82701439 - L2 LINE L2 0 3313 3167 301 140 0 0 chr4 119629759 119629809 -82698538 - Tigger4(Zombi) DNA MER2_type -441 2290 2241 1035 202 87 10 chr4 119630222 119630430 -82697917 + MER58A DNA MER1_type 1 224 0 16725 114 40 26 chr4 119631013 119631169 -82697178 - Tigger4(Zombi) DNA MER2_type -4 2727 2575 243 0 0 0 chr4 119631169 119631196 -82697151 + (TA)n Simple_repeat Simple_repeat 2 28 0 16725 114 40 26 chr4 119631196 119632581 -82695766 - Tigger4(Zombi) DNA MER2_type -156 2575 1211 1707 105 8 4 chr4 119632581 119632848 -82695499 + L1MA2 LINE L1 6037 6304 0 16725 114 40 26 chr4 119632848 119633543 -82694804 - Tigger4(Zombi) DNA MER2_type -1520 1211 443 2151 113 0 7 chr4 119633543 119633852 -82694495 - AluSc SINE Alu -2 307 1 16725 114 40 26 chr4 119633852 119634302 -82694045 - Tigger4(Zombi) DNA MER2_type -2288 443 1 326 253 120 33 chr4 119634706 119634856 -82693491 + ERVL LTR ERVL 4618 4780 -984 2122 129 0 28 chr4 119634856 119635174 -82693173 + AluSx SINE Alu 1 309 -3 5193 206 67 21 chr4 119635272 119635642 -82692705 + Charlie1a DNA MER1_type 32 383 -2378 2486 54 0 22 chr4 119635642 119635956 -82692391 + AluY SINE Alu 1 307 -4 5193 206 67 21 chr4 119635956 119636732 -82691615 + Charlie1a DNA MER1_type 383 1253 -1508 1061 157 11 0 chr4 119636732 119636910 -82691437 + L1PA8A LINE L1 5939 6118 -13 5193 206 67 21 chr4 119636910 119637118 -82691229 + Charlie1a DNA MER1_type 1253 1450 -5 27 29 0 0 chr4 119637220 119637254 -82691093 + AT_rich Low_complexity Low_complexity 1 34 0 218 278 0 0 chr4 119639410 119639464 -82688883 - L2 LINE L2 -8 3264 3211 223 344 78 7 chr4 119639530 119639684 -82688663 + L2 LINE L2 2608 2772 -542 2265 105 3 10 chr4 119639858 119640163 -82688184 + AluSc SINE Alu 1 303 -6 2139 105 0 10 chr4 119640178 119640473 -82687874 + AluSx SINE Alu 21 312 0 2010 208 58 64 chr4 119640993 119641584 -82686763 - MLT1E LTR MaLR -4 589 3 324 267 33 0 chr4 119642683 119642773 -82685574 + L2 LINE L2 3220 3312 -1 341 329 27 20 chr4 119642904 119643050 -82685297 - MIR SINE MIR -56 206 60 905 245 124 43 chr4 119644498 119644870 -82683477 - MLT1J2 LTR MaLR -27 423 22 225 324 0 14 chr4 119646257 119646328 -82682019 - L2 LINE L2 -15 3257 3188 6008 60 9 1 chr4 119646436 119647199 -82681148 + L1PA8 LINE L1 5395 6163 -9 818 247 69 103 chr4 119647209 119647385 -82680962 - MLT1J LTR MaLR -46 465 285 1161 85 0 0 chr4 119647385 119647538 -82680809 + L1PA11 LINE L1 6021 6173 -1 818 247 69 103 chr4 119647538 119647838 -82680509 - MLT1J LTR MaLR -226 285 5 311 348 0 43 chr4 119647954 119648095 -82680252 - L2 LINE L2 -219 3053 2919 395 329 71 14 chr4 119648140 119648350 -82679997 - L2 LINE L2 -470 2844 2623 281 297 47 68 chr4 119648520 119648668 -82679679 - L2 LINE L2 -946 2368 2224 197 149 43 64 chr4 119649633 119649680 -82678667 - L2 LINE L2 -1 3312 3267 212 262 89 83 chr4 119649884 119650052 -82678295 - L2 LINE L2 -213 3059 2891 705 272 101 26 chr4 119650167 119650395 -82677952 - MIR SINE MIR -10 252 8 558 308 107 36 chr4 119652364 119652777 -82675570 - MLT1L LTR MaLR -23 592 151 25 0 0 0 chr4 119653050 119653075 -82675272 + AT_rich Low_complexity Low_complexity 1 25 0 954 223 15 15 chr4 119653157 119653363 -82674984 + MIR SINE MIR 47 252 -10 841 182 0 0 chr4 119653387 119653519 -82674828 - FLAM_C SINE Alu 0 133 2 213 39 0 0 chr4 119653709 119653735 -82674612 + (TG)n Simple_repeat Simple_repeat 1 26 0 1589 228 45 11 chr4 119653864 119654242 -82674105 - LTR52 LTR ERVL -19 402 12 335 278 62 45 chr4 119655457 119655633 -82672714 + MIR SINE MIR 84 262 0 3025 109 9 2 chr4 119655689 119656131 -82672216 - L1PA14 LINE L1 -13 6148 5704 202 339 42 34 chr4 119656208 119656326 -82672021 + L2 LINE L2 2716 2834 -480 226 232 43 43 chr4 119656413 119656482 -82671865 - MIR SINE MIR 0 262 194 818 291 47 23 chr4 119656744 119657117 -82671230 + MLT1J2 LTR MaLR 21 447 -3 299 149 175 26 chr4 119657146 119657260 -82671087 - L1ME4a LINE L1 -3 6118 5988 262 341 15 0 chr4 119657897 119658032 -82670315 - L1ME4a LINE L1 -303 5818 5682 24 32 0 0 chr4 119658314 119658345 -82670002 + AT_rich Low_complexity Low_complexity 1 31 0 439 195 23 0 chr4 119659077 119659164 -82669183 - L1ME4a LINE L1 -465 5656 5568 36508 40 29 3 chr4 119659166 119663720 -82664627 + L1P LINE L1 1 4672 -1474 2078 91 0 14 chr4 119664826 119665135 -82663212 - AluSc SINE Alu 0 305 1 512 216 48 174 chr4 119665630 119665921 -82662426 - MIR SINE MIR -2 260 7 289 212 0 71 chr4 119666548 119666633 -82661714 + MIR SINE MIR 101 179 -83 2277 88 3 0 chr4 119667105 119667399 -82660948 - AluY SINE Alu -16 295 1 27 0 0 0 chr4 119668577 119668604 -82659743 + AT_rich Low_complexity Low_complexity 1 27 0 227 239 0 28 chr4 119669676 119669747 -82658600 - MLT1K LTR MaLR -1 587 519 21 0 0 0 chr4 119669991 119670012 -82658335 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr4 119670051 119670086 -82658261 + (GA)n Simple_repeat Simple_repeat 2 36 0 679 284 142 26 chr4 119670136 119670488 -82657859 - MLT1I LTR MaLR -16 393 1 210 271 167 0 chr4 119670658 119670754 -82657593 - MIR SINE MIR -1 261 150 1898 117 64 0 chr4 119670882 119671164 -82657183 - AluSx SINE Alu -12 300 1 24 0 0 0 chr4 119671242 119671266 -82657081 + AT_rich Low_complexity Low_complexity 1 24 0 619 293 79 43 chr4 119671307 119671699 -82656648 - HAL1 LINE L1 -19 2488 2083 1081 155 17 6 chr4 119671724 119671938 -82656409 - FRAM SINE Alu 0 216 1 1818 117 0 0 chr4 119672101 119672348 -82655999 + AluSx SINE Alu 58 304 -8 287 347 104 14 chr4 119672348 119672492 -82655855 + L3 LINE CR1 1396 1552 -25 239 211 0 28 chr4 119673109 119673180 -82655167 + L1ME3A LINE L1 5261 5329 -2479 1060 161 39 0 chr4 119673183 119673363 -82654984 + MLT1A1 LTR MaLR 179 365 0 1084 238 135 44 chr4 119673393 119674001 -82654346 + LTR50 LTR ERVL 1 761 -34 1195 234 49 39 chr4 119674004 119674392 -82653955 + L1ME3A LINE L1 5747 6138 -32 21 0 0 0 chr4 119674405 119674426 -82653921 + AT_rich Low_complexity Low_complexity 1 21 0 43 35 0 0 chr4 119674535 119674592 -82653755 + AT_rich Low_complexity Low_complexity 1 57 0 336 185 0 0 chr4 119675330 119675395 -82652952 - L1ME3A LINE L1 -69 6101 6037 240 290 29 0 chr4 119675447 119675516 -82652831 - L2 LINE L2 0 3313 3243 358 296 0 0 chr4 119675539 119675627 -82652720 + MIR SINE MIR 53 140 -122 2169 94 74 11 chr4 119675751 119676103 -82652244 - THE1C LTR MaLR 0 375 2 428 283 163 72 chr4 119676103 119676652 -82651695 + HAL1 LINE L1 30 632 -1875 675 231 47 5 chr4 119676752 119676964 -82651383 + HAL1 LINE L1 1994 2214 -293 243 268 46 32 chr4 119677054 119677184 -82651163 + MLT2E LTR ERVL 41 215 -342 1707 146 87 10 chr4 119677233 119677521 -82650826 + AluSx SINE Alu 1 310 -2 231 294 78 0 chr4 119677820 119677922 -82650425 + HAL1 LINE L1 2289 2398 -109 1804 172 3 3 chr4 119678106 119678403 -82649944 + AluJo SINE Alu 1 297 -15 2220 130 3 0 chr4 119678980 119679288 -82649059 - AluSx SINE Alu -1 311 3 3137 206 53 15 chr4 119680635 119681428 -82646919 - L1MB8 LINE L1 -23 7574 6752 2114 125 0 3 chr4 119681429 119681717 -82646630 + AluSx SINE Alu 5 291 -21 357 208 0 0 chr4 119681745 119681822 -82646525 + (CATATA)n Simple_repeat Simple_repeat 5 81 0 844 149 0 15 chr4 119681843 119681977 -82646370 - FLAM_C SINE Alu 0 133 2 628 233 6 17 chr4 119681977 119682149 -82646198 - L1MB8 LINE L1 -813 6752 6583 458 257 71 33 chr4 119682335 119682518 -82645829 + MER63A DNA MER1_type 20 209 -1 2341 92 9 3 chr4 119682692 119683030 -82645317 - L1MA3 LINE L1 -249 6056 5717 3420 164 25 37 chr4 119683033 119683785 -82644562 - L1MB8 LINE L1 -2302 5263 4521 516 84 0 0 chr4 119683789 119683872 -82644475 + (CCTG)n Simple_repeat Simple_repeat 2 84 0 4238 102 23 5 chr4 119683890 119684550 -82643797 - L1MB8 LINE L1 -4066 3499 2828 * 4687 148 45 14 chr4 119684544 119685349 -82642998 - L1MB8 LINE L1 -6721 844 15 342 286 79 0 chr4 119685453 119685579 -82642768 - L2 LINE L2 -1 3312 3177 180 163 0 0 chr4 119687971 119688014 -82640333 + (TTCA)n Simple_repeat Simple_repeat 4 46 0 194 263 224 39 chr4 119688054 119688210 -82640137 - L2 LINE L2 -91 3222 3038 996 273 139 28 chr4 119688356 119688825 -82639522 + LTR33 LTR ERVL 1 521 0 1926 147 0 10 chr4 119689462 119689754 -82638593 - AluJo SINE Alu -23 289 1 2166 136 0 0 chr4 119690164 119690473 -82637874 + AluSx SINE Alu 1 309 -3 195 69 0 0 chr4 119690975 119691004 -82637343 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 231 152 0 0 chr4 119692570 119692616 -82635731 + A-rich Low_complexity Low_complexity 4 49 0 4073 137 29 40 chr4 119693006 119693699 -82634648 + L1MD1 LINE L1 5490 6176 -66 2110 127 0 7 chr4 119693699 119693991 -82634356 - AluSx SINE Alu -22 290 1 4073 137 29 40 chr4 119693991 119694057 -82634290 + L1MD1 LINE L1 6176 6241 -1 31 58 0 0 chr4 119694395 119694447 -82633900 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr4 119695056 119695079 -82633268 + AT_rich Low_complexity Low_complexity 1 23 0 372 224 35 0 chr4 119695485 119695570 -82632777 + MIR SINE MIR 175 262 0 2244 81 7 7 chr4 119695822 119696118 -82632229 + AluSg SINE Alu 1 296 -14 257 348 54 22 chr4 119696224 119696408 -82631939 + L3 LINE CR1 1121 1310 -267 204 327 115 18 chr4 119696441 119696554 -82631793 + L3 LINE CR1 1391 1514 -63 1434 161 209 43 chr4 119696667 119696974 -82631373 - MLT1C LTR MaLR -3 464 75 2000 132 3 10 chr4 119696974 119697277 -82631070 + AluSq SINE Alu 1 301 -12 1434 161 209 43 chr4 119697277 119697367 -82630980 - MLT1C LTR MaLR -392 75 1 1696 262 61 26 chr4 119697477 119697944 -82630403 - MLT1G LTR MaLR -41 613 51 1743 169 3 40 chr4 119698005 119698307 -82630040 + AluJb SINE Alu 1 291 -21 266 204 35 106 chr4 119699223 119699336 -82629011 + L1PA15-16 LINE L1 241 345 -6504 856 331 30 82 chr4 119699775 119700240 -82628107 + L2 LINE L2 2832 3272 0 1982 44 4 67 chr4 119700735 119701005 -82627342 + AluY SINE Alu 1 253 -58 846 279 25 25 chr4 119701584 119701824 -82626523 - MIR SINE MIR 0 262 23 204 250 16 0 chr4 119703100 119703164 -82625183 + T-rich Low_complexity Low_complexity 6 70 0 603 217 145 14 chr4 119703202 119703345 -82625002 - ORSL DNA AcHobo -31 244 64 198 103 0 0 chr4 119703345 119703374 -82624973 + (TG)n Simple_repeat Simple_repeat 2 30 0 603 217 145 14 chr4 119703374 119703437 -82624910 - ORSL DNA AcHobo -211 64 11 24 0 0 0 chr4 119703695 119703719 -82624628 + AT_rich Low_complexity Low_complexity 1 24 0 4974 122 56 55 chr4 119703719 119704641 -82623706 + MER49 LTR ERV1 1 923 0 260 318 95 14 chr4 119705398 119705546 -82622801 + MER5B DNA MER1_type 1 160 -18 249 310 62 48 chr4 119705419 119705564 -82622783 - MER5A DNA MER1_type -25 164 18 * 2157 112 3 19 chr4 119705739 119706051 -82622296 - AluSq SINE Alu -6 307 1 399 328 88 6 chr4 119706251 119706422 -82621925 + MER5A DNA MER1_type 2 186 -3 5768 118 8 41 chr4 119706912 119708175 -82620172 - L1PA16 LINE L1 -9 6157 4913 242 383 25 15 chr4 119709051 119709252 -82619095 + L2 LINE L2 2889 3091 -181 716 163 31 0 chr4 119709416 119709545 -82618802 - L1PB4 LINE L1 -2 6154 6022 647 229 47 31 chr4 119709678 119709870 -82618477 - MLT1K LTR MaLR 0 588 394 228 320 113 0 chr4 119710451 119710548 -82617799 - MLT1K LTR MaLR -368 220 113 294 262 60 0 chr4 119710686 119710770 -82617577 + MIR SINE MIR 118 206 -56 25 0 0 0 chr4 119711173 119711198 -82617149 + AT_rich Low_complexity Low_complexity 1 25 0 2482 156 29 7 chr4 119711205 119711622 -82616725 + MSTB LTR MaLR 1 426 0 228 0 93 23 chr4 119712030 119712073 -82616274 + T-rich Low_complexity Low_complexity 1 46 0 7767 17 0 2 chr4 119712076 119713338 -82615009 - L1PA2 LINE L1 0 6155 4895 746 253 64 122 chr4 119713769 119713790 -82614557 + MLT1J LTR MaLR 2 23 -488 1915 120 78 59 chr4 119713790 119714147 -82614200 - THE1B LTR MaLR 0 364 1 746 253 64 122 chr4 119714147 119714642 -82613705 + MLT1J LTR MaLR 23 488 -23 297 373 113 11 chr4 119714799 119714984 -82613363 + MIR3 SINE MIR 5 208 0 679 237 111 0 chr4 119715043 119715233 -82613114 - MIR SINE MIR -40 222 12 480 276 162 29 chr4 119716975 119717185 -82611162 - MIR SINE MIR -13 249 12 2122 126 0 0 chr4 119718891 119719192 -82609155 + AluSx SINE Alu 1 301 -11 294 189 0 14 chr4 119719902 119719976 -82608371 + L1P LINE L1 4982 5054 -1092 950 270 32 0 chr4 119720274 119720522 -82607825 - MIR SINE MIR -3 259 4 526 251 126 58 chr4 119720524 119720922 -82607425 + L1ME LINE L1 5398 5822 -299 * 4406 174 42 16 chr4 119720910 119721804 -82606543 + L1MB1 LINE L1 5205 6123 -45 2155 126 0 0 chr4 119721804 119722098 -82606249 + AluSg SINE Alu 1 294 -16 4406 174 42 16 chr4 119722098 119722133 -82606214 + L1MB1 LINE L1 6123 6156 -12 219 36 0 0 chr4 119723424 119723452 -82604895 + (CA)n Simple_repeat Simple_repeat 1 28 0 423 322 18 12 chr4 119723760 119723922 -82604425 - MIR SINE MIR -66 142 16 2090 117 0 7 chr4 119724127 119724418 -82603929 + AluSq SINE Alu 1 289 -24 22 0 0 0 chr4 119724425 119724447 -82603900 + AT_rich Low_complexity Low_complexity 1 22 0 2056 122 0 3 chr4 119725249 119725537 -82602810 + AluSx SINE Alu 5 291 -21 482 241 171 12 chr4 119725552 119725722 -82602625 - MLT1J LTR MaLR -312 199 3 357 24 0 0 chr4 119728452 119728494 -82599853 + (TA)n Simple_repeat Simple_repeat 1 42 0 279 0 0 0 chr4 119728493 119728524 -82599823 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 437 310 58 11 chr4 119729420 119729594 -82598753 - MIR SINE MIR -80 182 1 828 245 15 68 chr4 119730120 119730337 -82598010 + MIR SINE MIR 2 204 -58 183 42 0 0 chr4 119730337 119730361 -82597986 + (GA)n Simple_repeat Simple_repeat 2 25 0 828 245 15 68 chr4 119730361 119730408 -82597939 + MIR SINE MIR 204 252 -10 906 224 29 0 chr4 119731266 119731471 -82596876 - MER58A DNA MER1_type -8 216 6 21 57 0 0 chr4 119731537 119731572 -82596775 + AT_rich Low_complexity Low_complexity 1 35 0 338 291 77 17 chr4 119731793 119731910 -82596437 - MIR SINE MIR -116 146 23 21 36 0 0 chr4 119732152 119732180 -82596167 + AT_rich Low_complexity Low_complexity 1 28 0 556 113 31 0 chr4 119732427 119732524 -82595823 - L1PA15 LINE L1 0 6165 6066 28 48 0 0 chr4 119733330 119733372 -82594975 + AT_rich Low_complexity Low_complexity 1 42 0 711 280 36 7 chr4 119733430 119733851 -82594496 + L1ME LINE L1 2230 2662 -3484 268 206 48 0 chr4 119733997 119734060 -82594287 + L1ME LINE L1 2733 2798 -3348 902 236 178 36 chr4 119734122 119734644 -82593703 + L1ME LINE L1 4563 5158 -988 2192 108 3 0 chr4 119734844 119735139 -82593208 + AluSp SINE Alu 1 296 -17 298 282 38 0 chr4 119735141 119735272 -82593075 + L1ME LINE L1 5346 5481 -681 870 115 13 13 chr4 119735398 119735555 -82592792 + (GGGGA)n Simple_repeat Simple_repeat 1 157 0 234 295 154 13 chr4 119735847 119735996 -82592351 + MLT1K LTR MaLR 102 271 -317 2397 117 14 22 chr4 119736104 119736471 -82591876 - THE1B LTR MaLR 0 364 1 1992 126 0 45 chr4 119736937 119737246 -82591101 - AluSx SINE Alu 0 312 18 717 213 0 22 chr4 119737903 119738039 -82590308 - FLAM_C SINE Alu 0 133 1 555 313 21 99 chr4 119738088 119738229 -82590118 + L3 LINE CR1 1153 1303 -274 1928 97 86 0 chr4 119738229 119738508 -82589839 + AluSq SINE Alu 1 303 -10 555 313 21 99 chr4 119738508 119738615 -82589732 + L3 LINE CR1 1303 1365 -212 1727 176 0 55 chr4 119738615 119738944 -82589403 - AluJo SINE Alu -1 311 1 555 313 21 99 chr4 119738944 119739068 -82589279 + L3 LINE CR1 1365 1497 -80 947 205 16 5 chr4 119739165 119739350 -82588997 - MER5A DNA MER1_type -2 187 1 404 296 14 14 chr4 119740735 119740877 -82587470 - LTR41 LTR ERVL -629 144 3 3756 195 46 28 chr4 119741006 119742405 -82585942 + L1MB7 LINE L1 4613 6058 -126 1752 189 3 3 chr4 119742405 119742701 -82585646 + AluJb SINE Alu 1 296 -16 3756 195 46 28 chr4 119742701 119742829 -82585518 + L1MB7 LINE L1 6058 6182 -2 183 184 0 0 chr4 119743916 119743954 -82584393 + GA-rich Low_complexity Low_complexity 2 39 0 288 253 13 0 chr4 119745069 119745144 -82583203 + MER94 DNA DNA 10 85 -49 241 313 26 26 chr4 119745342 119745457 -82582890 + MIR3 SINE MIR 89 203 -5 325 321 173 6 chr4 119745671 119745833 -82582514 - MIR SINE MIR -61 201 13 29 47 0 0 chr4 119746236 119746279 -82582068 + AT_rich Low_complexity Low_complexity 1 43 0 2166 127 7 0 chr4 119748076 119748368 -82579979 - AluSx SINE Alu -18 294 1 222 133 0 44 chr4 119748444 119748489 -82579858 - MER5B DNA MER1_type -14 164 122 246 225 42 42 chr4 119748497 119748568 -82579779 + MER5A DNA MER1_type 113 183 -6 296 286 138 95 chr4 119748639 119748691 -82579656 - L2 LINE L2 -4 3268 3220 2205 159 6 3 chr4 119748691 119749055 -82579292 - MLT1A1 LTR MaLR 0 365 1 296 286 138 95 chr4 119749055 119749327 -82579020 - L2 LINE L2 -52 3220 2930 231 315 66 47 chr4 119750693 119750998 -82577349 - Tigger8 DNA MER2_type -108 558 243 1654 185 0 33 chr4 119750998 119751301 -82577046 + AluJb SINE Alu 1 293 -19 231 315 66 47 chr4 119751301 119751376 -82576971 - Tigger8 DNA MER2_type -423 243 171 869 192 99 147 chr4 119752159 119752258 -82576089 - MLT1A1 LTR MaLR 0 365 263 2353 150 65 2 chr4 119752258 119752657 -82575690 + MSTB LTR MaLR 1 424 -2 869 192 99 147 chr4 119752657 119752973 -82575374 - MLT1A1 LTR MaLR -102 263 1 185 282 0 0 chr4 119753426 119753465 -82574882 - MIR SINE MIR -60 148 110 1663 204 0 3 chr4 119753623 119753908 -82574439 + AluSx SINE Alu 1 284 -28 2441 74 0 3 chr4 119754418 119754730 -82573617 - AluY SINE Alu 0 311 1 389 352 57 0 chr4 119754732 119754891 -82573456 - MIR3 SINE MIR -9 199 32 455 296 125 23 chr4 119755059 119755275 -82573072 - MLT1K LTR MaLR -168 420 183 2336 104 0 0 chr4 119755549 119755858 -82572489 + AluSg SINE Alu 1 309 -1 26 0 0 0 chr4 119755875 119755901 -82572446 + AT_rich Low_complexity Low_complexity 1 26 0 893 309 26 18 chr4 119755903 119756175 -82572172 + L3 LINE CR1 1293 1566 -11 21 57 0 0 chr4 119756337 119756372 -82571975 + AT_rich Low_complexity Low_complexity 1 35 0 309 295 115 37 chr4 119756577 119756783 -82571564 - L1ME4a LINE L1 -238 5883 5638 1558 142 45 0 chr4 119756783 119757072 -82571275 - L1MA7 LINE L1 0 6291 5990 309 295 115 37 chr4 119757072 119757214 -82571133 - L1ME4a LINE L1 -483 5638 5508 2234 108 3 0 chr4 119757473 119757769 -82570578 + AluSx SINE Alu 3 299 -13 1540 160 11 19 chr4 119758431 119758683 -82569664 + AluJb SINE Alu 36 287 -25 246 32 0 0 chr4 119758683 119758714 -82569633 + (CA)n Simple_repeat Simple_repeat 2 32 0 2408 83 0 0 chr4 119759618 119759918 -82568429 - AluSc SINE Alu -9 300 1 206 323 0 0 chr4 119760248 119760347 -82568000 + (TG)n Simple_repeat Simple_repeat 1 99 0 426 121 0 0 chr4 119761133 119761199 -82567148 + (TC)n Simple_repeat Simple_repeat 1 66 0 1369 123 64 0 chr4 119761199 119761434 -82566913 - AluJb SINE Alu -29 283 34 392 285 110 97 chr4 119761729 119762239 -82566108 - L1M2 LINE L1 -5657 1192 493 25 37 0 0 chr4 119762531 119762558 -82565789 + GC_rich Low_complexity Low_complexity 1 27 0 447 106 0 0 chr4 119762886 119762952 -82565395 + (TC)n Simple_repeat Simple_repeat 1 66 0 1035 166 64 0 chr4 119762952 119763187 -82565160 - AluJb SINE Alu -29 283 34 395 294 103 94 chr4 119763492 119764111 -82564236 - L1M2 LINE L1 -5657 1192 568 315 292 90 67 chr4 119767107 119767295 -82561052 - L1ME4a LINE L1 -3 6118 5919 793 176 0 0 chr4 119767295 119767420 -82560927 - FLAM_C SINE Alu -8 125 1 315 292 90 67 chr4 119767420 119767543 -82560804 - L1ME4a LINE L1 -202 5919 5800 515 319 57 3 chr4 119767546 119767844 -82560503 - L1ME4a LINE L1 -356 5765 5452 24 32 0 0 chr4 119768011 119768042 -82560305 + AT_rich Low_complexity Low_complexity 1 31 0 341 275 54 36 chr4 119768124 119768291 -82560056 - L1ME4a LINE L1 -1036 5110 4941 258 271 93 48 chr4 119768369 119768660 -82559687 - L1ME4a LINE L1 -1730 4416 4113 806 229 98 14 chr4 119768797 119769011 -82559336 + MIR SINE MIR 2 233 -29 2242 146 13 18 chr4 119769150 119769535 -82558812 + MSTB LTR MaLR 1 383 -43 564 194 236 0 chr4 119769584 119769728 -82558619 - MER5A DNA MER1_type -1 188 11 279 322 22 11 chr4 119769887 119769977 -82558370 - MIR SINE MIR -97 111 21 981 192 59 0 chr4 119770293 119770496 -82557851 + MER20 DNA MER1_type 1 215 -4 513 282 118 29 chr4 119770836 119771071 -82557276 + MIR SINE MIR 4 252 -10 229 158 26 0 chr4 119771037 119771075 -82557272 + L2 LINE L2 3263 3301 -12 * 1832 179 10 13 chr4 119772369 119772682 -82555665 - AluSx SINE Alu 0 312 1 2002 110 4 4 chr4 119772865 119773146 -82555201 + AluSx SINE Alu 1 281 -31 26 0 0 0 chr4 119773636 119773662 -82554685 + AT_rich Low_complexity Low_complexity 1 26 0 306 204 41 10 chr4 119773773 119773871 -82554476 + L1MC/D LINE L1 5378 5478 -2330 527 246 24 8 chr4 119774002 119774128 -82554219 - MIR SINE MIR -89 173 46 402 259 89 96 chr4 119774359 119774629 -82553718 + L2 LINE L2 2954 3221 -92 1309 157 80 15 chr4 119775164 119775489 -82552858 - LTR37A LTR ERV1 0 426 81 30 0 0 0 chr4 119776210 119776240 -82552107 + AT_rich Low_complexity Low_complexity 1 30 0 548 308 32 78 chr4 119776549 119776812 -82551535 - L2 LINE L2 -3 3310 3065 1990 144 72 5 chr4 119776812 119777215 -82551132 - L1MA4A LINE L1 0 6303 5874 548 308 32 78 chr4 119777215 119777295 -82551052 - L2 LINE L2 -248 3065 2983 6935 172 47 41 chr4 119777563 119778243 -82550104 + L1MA2 LINE L1 3658 4332 -1972 2126 117 10 3 chr4 119778243 119778533 -82549814 + AluSx SINE Alu 5 296 -16 6935 172 47 41 chr4 119778533 119779197 -82549150 + L1MA2 LINE L1 4332 4990 -1314 19253 52 56 1 chr4 119779197 119782373 -82545974 + L1PA5 LINE L1 2912 6139 -15 2615 64 3 9 chr4 119782381 119782724 -82545623 + L1PA5 LINE L1 5814 6154 0 6935 172 47 41 chr4 119782724 119782939 -82545408 + L1MA2 LINE L1 4996 5208 -1096 1728 149 56 21 chr4 119782939 119783227 -82545120 + AluJb SINE Alu 1 298 -14 6935 172 47 41 chr4 119783227 119784157 -82544190 + L1MA2 LINE L1 5203 6295 -4 2053 51 0 81 chr4 119784157 119784452 -82543895 - AluY SINE Alu -12 299 29 2798 13 0 0 chr4 119784943 119785251 -82543096 + AluYa5 SINE Alu 1 308 -3 547 324 37 25 chr4 119785464 119785705 -82542642 - L2 LINE L2 -831 2483 2240 2052 137 0 7 chr4 119786776 119787075 -82541272 - AluSq SINE Alu -16 297 1 2415 198 35 19 chr4 119788358 119788899 -82539448 - MER44D DNA MER2_type 0 605 1 21 0 0 0 chr4 119789272 119789293 -82539054 + AT_rich Low_complexity Low_complexity 1 21 0 2581 65 0 0 chr4 119789688 119789997 -82538350 + AluY SINE Alu 1 309 -2 432 275 113 7 chr4 119790144 119790286 -82538061 + MIR SINE MIR 5 161 -101 1854 171 0 3 chr4 119791001 119791299 -82537048 - AluJb SINE Alu -15 297 1 552 279 124 55 chr4 119791976 119792481 -82535866 + L1M4b LINE L1 29 707 -6152 404 195 0 0 chr4 119792482 119792559 -82535788 + AluS SINE Alu 1 77 -232 429 226 22 111 chr4 119792560 119792786 -82535561 + L1M4b LINE L1 733 938 -5921 905 275 101 50 chr4 119793204 119793596 -82534751 - MLT1K LTR MaLR -5 583 160 2270 100 7 0 chr4 119793596 119793896 -82534451 + AluSx SINE Alu 1 302 -10 905 275 101 50 chr4 119793896 119793986 -82534361 - MLT1K LTR MaLR -428 160 76 650 245 168 0 chr4 119794430 119794638 -82533709 - MIR SINE MIR 0 262 20 628 328 39 13 chr4 119795517 119795749 -82532598 + MIR SINE MIR 4 241 -21 210 281 67 92 chr4 119796098 119796262 -82532085 - L2 LINE L2 -5 3308 3149 895 172 6 17 chr4 119796268 119796448 -82531899 + MLT1D LTR MaLR 1 178 -327 707 122 39 70 chr4 119796461 119796617 -82531730 - L1PA5 LINE L1 -1142 5004 4854 4641 110 30 101 chr4 119796618 119797824 -82530523 + L1PA5 LINE L1 5002 6145 -9 1165 123 20 0 chr4 119797843 119798038 -82530309 + L1PA16 LINE L1 5593 5791 -375 245 179 0 18 chr4 119798038 119798094 -82530253 + (TA)n Simple_repeat Simple_repeat 2 56 0 2373 129 11 11 chr4 119798104 119798477 -82529870 + L1PA16 LINE L1 5785 6157 -9 336 181 98 105 chr4 119798637 119798770 -82529577 - MER5C DNA MER1_type 0 324 193 369 205 79 24 chr4 119798784 119798911 -82529436 + MLT1D LTR MaLR 202 335 -170 396 0 0 0 chr4 119799044 119799088 -82529259 + (TG)n Simple_repeat Simple_repeat 1 44 0 769 312 149 49 chr4 119801379 119802196 -82526151 - L2 LINE L2 -5 3267 2386 4415 199 63 29 chr4 119804297 119804626 -82523721 + L1MC3 LINE L1 6532 6848 -937 375 23 0 0 chr4 119804626 119804670 -82523677 + (CA)n Simple_repeat Simple_repeat 1 44 0 4415 199 63 29 chr4 119804670 119805512 -82522835 + L1MC3 LINE L1 6848 7743 -42 25 0 0 28 chr4 119805545 119805565 -82522782 + AT_rich Low_complexity Low_complexity 1 21 -14 2113 108 0 17 chr4 119805565 119805860 -82522487 + AluSx SINE Alu 1 290 -22 25 0 0 28 chr4 119805860 119805875 -82522472 + AT_rich Low_complexity Low_complexity 21 35 0 233 176 0 44 chr4 119806076 119806144 -82522203 + L1MD3 LINE L1 7007 7071 -924 2396 187 27 2 chr4 119806369 119806819 -82521528 - LTR32 LTR ERVL 0 471 11 26 0 0 0 chr4 119807562 119807588 -82520759 + AT_rich Low_complexity Low_complexity 1 26 0 2470 66 0 0 chr4 119808578 119808881 -82519466 - AluY SINE Alu -8 303 1 1768 142 20 0 chr4 119809215 119809511 -82518836 + L1MA6 LINE L1 5999 6300 0 196 376 35 57 chr4 119809678 119809819 -82518528 - L2 LINE L2 -2 3270 3133 22 35 0 0 chr4 119810389 119810418 -82517929 + AT_rich Low_complexity Low_complexity 1 29 0 349 214 56 8 chr4 119810442 119810568 -82517779 + L1ME4a LINE L1 5986 6117 -4 2183 153 54 9 chr4 119811058 119811521 -82516826 + L1MB7 LINE L1 5345 5828 -356 342 67 0 0 chr4 119811521 119811566 -82516781 + Alu SINE Alu 3 47 -252 13382 97 13 8 chr4 119811566 119813539 -82514808 + HERV9 LTR ERV1 1158 3139 -5260 4666 81 0 12 chr4 119813546 119814211 -82514136 + HERV9 LTR ERV1 4080 4736 -3663 462 276 199 15 chr4 119814743 119814939 -82513408 - MIR SINE MIR -1 261 30 2141 108 16 0 chr4 119815745 119816051 -82512296 - AluY SINE Alu 0 311 1 723 254 69 14 chr4 119816211 119816542 -82511805 + LTR16A LTR ERVL 21 447 -3 2126 109 20 7 chr4 119817864 119818168 -82510179 + AluSc SINE Alu 1 308 -1 14039 25 0 0 chr4 119818168 119820587 -82507760 + L1PA3 LINE L1 3734 6152 -3 22 0 0 0 chr4 119820593 119820615 -82507732 + AT_rich Low_complexity Low_complexity 1 22 0 1117 325 81 58 chr4 119820970 119822134 -82506213 - L2 LINE L2 -5 3267 2079 2070 91 6 69 chr4 119822221 119822540 -82505807 - AluSp SINE Alu -14 299 1 1020 207 35 20 chr4 119823035 119823238 -82505109 + MER63A DNA MER1_type 5 210 0 2202 72 58 10 chr4 119823540 119823832 -82504515 - AluY SINE Alu -5 306 1 21 57 0 0 chr4 119824028 119824063 -82504284 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr4 119825140 119825170 -82503177 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 119825390 119825412 -82502935 + AT_rich Low_complexity Low_complexity 1 22 0 1228 244 218 12 chr4 119826911 119827410 -82500937 + LTR50 LTR ERVL 13 614 -181 1005 169 6 33 chr4 119827428 119827611 -82500736 - MER5A DNA MER1_type 0 189 12 317 143 32 0 chr4 119827621 119827684 -82500663 + LTR50 LTR ERVL 710 774 -21 33 0 0 0 chr4 119827740 119827773 -82500574 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr4 119828076 119828099 -82500248 + AT_rich Low_complexity Low_complexity 1 23 0 2036 117 17 3 chr4 119828399 119828689 -82499658 - AluSq SINE Alu -19 294 1 24 0 0 0 chr4 119828689 119828713 -82499634 + AT_rich Low_complexity Low_complexity 1 24 0 328 268 0 41 chr4 119828778 119828875 -82499472 + MIR SINE MIR 50 142 -120 24 53 0 0 chr4 119829208 119829246 -82499101 + AT_rich Low_complexity Low_complexity 1 38 0 292 213 21 11 chr4 119829637 119829731 -82498616 - L1MC5 LINE L1 -30 7931 7837 471 229 55 106 chr4 119830100 119830318 -82498029 + MER63A DNA MER1_type 4 210 0 466 110 27 13 chr4 119830551 119830657 -82497690 + HERV17 LTR ERV1 4866 5051 -3206 * 1557 105 22 65 chr4 119830647 119831093 -82497254 + HERV17 LTR ERV1 706 1246 -5650 1352 81 0 0 chr4 119831084 119831269 -82497078 + LTR12 LTR ERV1 530 714 0 * 2051 69 0 0 chr4 119831269 119831516 -82496831 + AluY SINE Alu 58 304 -7 1865 133 56 26 chr4 119831516 119831855 -82496492 + L1MB7 LINE L1 5819 6167 -17 1814 154 17 17 chr4 119832632 119832924 -82495423 + AluJb SINE Alu 6 297 -15 2274 169 49 14 chr4 119832966 119833383 -82494964 - LOR1b LTR ERV1 0 461 26 2017 119 83 3 chr4 119833383 119833695 -82494652 - MER1B DNA MER1_type 0 337 1 2274 169 49 14 chr4 119833695 119833722 -82494625 - LOR1b LTR ERV1 -435 26 1 2225 202 118 18 chr4 119833761 119834276 -82494071 - MLT1F1 LTR MaLR 0 567 1 221 98 59 20 chr4 119835699 119835750 -82492597 + A-rich Low_complexity Low_complexity 3 55 0 24 0 0 0 chr4 119836011 119836035 -82492312 + AT_rich Low_complexity Low_complexity 1 24 0 413 230 34 20 chr4 119836200 119836348 -82491999 - L1M4 LINE L1 -1717 4429 4280 22 0 0 0 chr4 119837142 119837164 -82491183 + AT_rich Low_complexity Low_complexity 1 22 0 1302 216 7 20 chr4 119837924 119838229 -82490118 - MER58B DNA MER1_type -8 333 33 711 175 11 113 chr4 119838798 119838975 -82489372 - FRAM SINE Alu -17 159 1 383 295 67 27 chr4 119838977 119839126 -82489221 - L2 LINE L2 -10 3303 3149 406 337 54 24 chr4 119839128 119839333 -82489014 + HAL1 LINE L1 1516 1726 -781 356 229 8 41 chr4 119839379 119839413 -82488934 + L1MA10 LINE L1 6215 6249 -85 2166 166 82 7 chr4 119839413 119839842 -82488505 - LOR1b LTR ERV1 0 461 1 356 229 8 41 chr4 119839842 119839929 -82488418 + L1MA10 LINE L1 6249 6332 -2 22 0 0 0 chr4 119839933 119839955 -82488392 + AT_rich Low_complexity Low_complexity 1 22 0 184 389 89 11 chr4 119840068 119840158 -82488189 - L2 LINE L2 -168 3104 3008 829 255 10 5 chr4 119840175 119840371 -82487976 - MIR SINE MIR -2 260 64 490 318 112 32 chr4 119841189 119841240 -82487107 - HAL1 LINE L1 -870 1637 1592 1491 151 0 0 chr4 119841240 119841465 -82486882 - AluJb SINE Alu -4 308 84 490 318 112 32 chr4 119841465 119841787 -82486560 - HAL1 LINE L1 -915 1592 1234 2251 100 3 0 chr4 119841952 119842243 -82486104 - AluSc SINE Alu -17 292 1 487 144 220 8 chr4 119842331 119842449 -82485898 - MLT1H1 LTR MaLR 0 555 413 232 306 14 0 chr4 119842500 119842572 -82485775 - MLT1H1 LTR MaLR -232 363 291 980 226 31 34 chr4 119842598 119842994 -82485353 - L1MEc LINE L1 -3682 2447 2093 2231 160 55 27 chr4 119843002 119843589 -82484758 + pTR5 LTR ERV1 743 1345 -1093 4441 133 54 48 chr4 119843605 119844422 -82483925 + LTR12 LTR ERV1 5 826 0 2111 126 0 43 chr4 119844569 119844894 -82483453 - AluY SINE Alu 0 311 1 316 325 32 19 chr4 119845066 119845220 -82483127 - L1MEc LINE L1 -5415 704 549 1993 129 40 20 chr4 119845244 119845546 -82482801 - AluSx SINE Alu -4 308 1 348 283 53 9 chr4 119845752 119845865 -82482482 - L1MEc LINE L1 -5750 369 252 323 269 115 0 chr4 119845908 119846038 -82482309 + LTR50 LTR ERVL 73 217 -578 234 279 148 0 chr4 119846217 119846339 -82482008 + LTR50 LTR ERVL 503 642 -153 2805 25 0 0 chr4 119848110 119848427 -82479920 - AluYb8 SINE Alu -1 317 1 831 130 0 0 chr4 119848431 119848554 -82479793 - L1PA13 LINE L1 -3 6160 6038 1644 176 50 0 chr4 119848654 119848932 -82479415 - AluJb SINE Alu -20 292 1 672 203 0 8 chr4 119849012 119849135 -82479212 - FLAM_A SINE Alu -11 122 1 313 341 58 7 chr4 119849280 119849418 -82478929 + MIR3 SINE MIR 39 183 -25 1830 150 59 68 chr4 119849664 119850103 -82478244 + MER61C LTR ERV1 12 431 -3 348 241 151 48 chr4 119850183 119850535 -82477812 - L1ME4a LINE L1 -1 6120 5733 883 169 38 6 chr4 119850886 119851069 -82477278 - L1MD1 LINE L1 0 6242 6054 690 226 49 9 chr4 119851071 119851297 -82477050 - L1MD1 LINE L1 -257 5985 5751 2419 53 0 10 chr4 119854587 119854888 -82473459 - AluY SINE Alu -13 298 1 1079 166 97 9 chr4 119854890 119855107 -82473240 - MER46A DNA MER2_type 0 236 1 716 214 131 35 chr4 119856237 119856466 -82471881 - MIR SINE MIR 0 262 12 1951 173 0 0 chr4 119857130 119857430 -82470917 - AluSx SINE Alu -12 300 1 2225 101 3 3 chr4 119857837 119858135 -82470212 - AluSg SINE Alu -12 298 1 2092 137 10 13 chr4 119858175 119858488 -82469859 - AluJb SINE Alu 0 312 1 1183 186 18 5 chr4 119858645 119858866 -82469481 - MER58A DNA MER1_type 0 224 1 31 0 0 0 chr4 119859162 119859193 -82469154 + AT_rich Low_complexity Low_complexity 1 31 0 207 323 132 41 chr4 119859365 119859631 -82468716 + L2 LINE L2 2113 2402 -912 279 278 106 61 chr4 119860309 119860507 -82467840 + L2 LINE L2 2448 2654 -660 * 747 223 66 28 chr4 119860502 119860713 -82467634 + L2 LINE L2 3095 3313 0 247 68 23 23 chr4 119860804 119860848 -82467499 + U5 snRNA snRNA 1 44 -72 330 300 98 71 chr4 119861034 119861371 -82466976 + L2 LINE L2 2968 3313 0 192 326 80 29 chr4 119861370 119861508 -82466839 + L2 LINE L2 2892 3036 -236 * 201 219 0 0 chr4 119861796 119861837 -82466510 + L3 LINE CR1 1525 1565 -12 1449 172 181 88 chr4 119862028 119862504 -82465843 - MLT2B1 LTR ERVL 0 520 1 1854 168 97 27 chr4 119863182 119863586 -82464761 - MSTB1 LTR MaLR 0 432 1 533 279 85 53 chr4 119864400 119864777 -82463570 - L1ME3A LINE L1 -345 5825 5437 378 269 52 19 chr4 119864919 119865131 -82463216 + L1M4 LINE L1 4484 4702 -1444 187 311 156 0 chr4 119865221 119865311 -82463036 + MER5A DNA MER1_type 86 189 0 583 208 21 14 chr4 119866262 119866406 -82461941 - MER33 DNA MER1_type -179 145 1 242 216 112 78 chr4 119866406 119866522 -82461825 + MIR SINE MIR 131 250 -12 2127 125 7 0 chr4 119867008 119867303 -82461044 + AluSx SINE Alu 1 297 -15 888 296 77 4 chr4 119868263 119868510 -82459837 + L2 LINE L2 2375 2639 -675 349 287 22 33 chr4 119868541 119868692 -82459655 + L1MC4 LINE L1 7032 7255 -631 769 263 62 49 chr4 119868814 119869422 -82458925 + L1MC5 LINE L1 7292 7907 -54 781 292 74 38 chr4 119869466 119869797 -82458550 + L2 LINE L2 2735 3076 -237 2298 85 10 3 chr4 119869797 119870092 -82458255 + AluSp SINE Alu 3 299 -14 781 292 74 38 chr4 119870092 119870145 -82458202 + L2 LINE L2 3076 3126 -187 2129 91 28 0 chr4 119870162 119870447 -82457900 + AluSq SINE Alu 1 293 -20 344 121 0 0 chr4 119870463 119870521 -82457826 - L1PB4 LINE L1 -8 6148 6091 826 168 0 0 chr4 119870521 119870664 -82457683 + L1P5 LINE L1 5440 5582 -574 653 240 77 16 chr4 119870667 119870850 -82457497 + L2 LINE L2 3115 3308 -5 389 240 74 8 chr4 119871217 119871338 -82457009 - Zaphod DNA AcHobo -165 3866 3738 232 242 106 0 chr4 119871694 119871760 -82456587 - MLT1K LTR MaLR -2 586 514 1440 175 46 4 chr4 119872785 119873048 -82455299 + AluJo SINE Alu 34 307 -5 372 340 84 5 chr4 119874446 119874661 -82453686 - MIR SINE MIR 0 262 31 22 0 0 0 chr4 119874904 119874926 -82453421 + AT_rich Low_complexity Low_complexity 1 22 0 240 99 56 70 chr4 119875639 119875710 -82452637 + T-rich Low_complexity Low_complexity 4 73 0 2547 30 3 0 chr4 119875748 119876043 -82452304 - AluYa5 SINE Alu -15 296 1 658 211 32 0 chr4 119876226 119876349 -82451998 - FLAM_A SINE Alu -6 127 1 292 265 47 30 chr4 119876629 119876763 -82451584 + MIR3 SINE MIR 37 172 -36 2775 199 63 14 chr4 119877585 119878207 -82450140 + MER82 DNA MER2_type 2 653 0 256 327 87 20 chr4 119878644 119878794 -82449553 + MIR SINE MIR 56 215 -47 22 0 0 0 chr4 119878986 119879008 -82449339 + AT_rich Low_complexity Low_complexity 1 22 0 400 311 67 0 chr4 119879117 119879236 -82449111 - L2 LINE L2 -9 3263 3137 624 203 19 25 chr4 119879458 119879616 -82448731 + L1ME2 LINE L1 5998 6154 -10 500 316 108 22 chr4 119879637 119880083 -82448264 - L2 LINE L2 -1028 2286 1803 829 232 103 21 chr4 119880088 119880321 -82448026 + MIR SINE MIR 8 259 -3 1855 163 3 0 chr4 119881947 119882236 -82446111 + AluJb SINE Alu 14 303 -9 1469 186 7 14 chr4 119882491 119882770 -82445577 + AluJb SINE Alu 22 298 -14 182 61 0 61 chr4 119882773 119882806 -82445541 + (CATATA)n Simple_repeat Simple_repeat 6 36 0 1533 193 29 0 chr4 119882822 119883102 -82445245 + AluJo SINE Alu 5 292 -20 31 26 0 0 chr4 119883662 119883700 -82444647 + AT_rich Low_complexity Low_complexity 1 38 0 670 250 112 5 chr4 119884479 119884675 -82443672 - MIR SINE MIR -3 259 43 199 328 90 52 chr4 119885189 119885323 -82443024 - MIR SINE MIR -68 194 56 198 377 29 0 chr4 119887855 119887924 -82440423 - L3 LINE CR1 -1037 540 470 918 288 17 5 chr4 119888278 119888538 -82439809 + MIR SINE MIR 2 262 0 34 42 0 0 chr4 119889852 119889900 -82438447 + AT_rich Low_complexity Low_complexity 1 48 0 1077 300 82 81 chr4 119891034 119891863 -82436484 - L2 LINE L2 -4 3309 2465 953 268 85 46 chr4 119891871 119892367 -82435980 + REP3 LTR ERV 1 515 -47 730 267 289 16 chr4 119892447 119892997 -82435350 - L2 LINE L2 -923 2391 1692 702 260 161 71 chr4 119893088 119893584 -82434763 + MER50 LTR ERV1 171 711 -23 24 67 0 0 chr4 119893965 119894010 -82434337 + AT_rich Low_complexity Low_complexity 1 45 0 340 308 231 0 chr4 119894106 119894301 -82434046 - MIR SINE MIR -20 242 3 2324 91 3 0 chr4 119894393 119894689 -82433658 + AluSp SINE Alu 1 297 -16 607 96 0 11 chr4 119894843 119894937 -82433410 + HY1 scRNA scRNA 18 110 -2 234 200 0 50 chr4 119895416 119895476 -82432871 + L1ME4a LINE L1 5984 6040 -81 23 54 0 0 chr4 119895485 119895522 -82432825 + AT_rich Low_complexity Low_complexity 1 37 0 1169 192 103 83 chr4 119896818 119897313 -82431034 - MLT1D LTR MaLR 0 505 1 24 0 0 0 chr4 119897708 119897732 -82430615 + AT_rich Low_complexity Low_complexity 1 24 0 271 248 45 23 chr4 119900407 119900449 -82427898 - L1MC4a LINE L1 -1878 5930 5890 2129 118 16 7 chr4 119900449 119900755 -82427592 - AluSx SINE Alu -3 309 1 271 248 45 23 chr4 119900755 119900845 -82427502 - L1MC4a LINE L1 -1918 5890 5795 1906 128 29 29 chr4 119901125 119901437 -82426910 - AluSx SINE Alu 0 312 1 526 281 109 15 chr4 119902437 119902704 -82425643 + MLT1I LTR MaLR 118 409 0 2669 89 5 19 chr4 119902749 119903118 -82425229 + THE1B LTR MaLR 1 364 0 336 318 158 15 chr4 119903124 119903189 -82425158 - MIR SINE MIR 0 262 208 1538 174 120 115 chr4 119903189 119903797 -82424550 + LTR36 LTR ERV1 1 611 0 336 318 158 15 chr4 119903797 119903976 -82424371 - MIR SINE MIR -54 208 8 290 67 22 0 chr4 119905073 119905118 -82423229 + (CA)n Simple_repeat Simple_repeat 2 47 0 180 264 139 39 chr4 119905536 119905665 -82422682 - MIR3 SINE MIR -22 186 45 679 79 10 0 chr4 119907146 119907247 -82421100 - AluSg/x SINE Alu -4 306 205 2083 118 0 3 chr4 119907512 119907799 -82420548 + AluSg SINE Alu 3 288 -22 3048 127 26 12 chr4 119907843 119908338 -82420009 - MER1A DNA MER1_type -27 502 1 2076 137 0 22 chr4 119910550 119910864 -82417483 + AluSx SINE Alu 1 307 -5 926 208 223 94 chr4 119911372 119911569 -82416778 + MLT1E1 LTR MaLR 1 171 -483 1792 159 40 7 chr4 119911569 119911870 -82416477 - AluSx SINE Alu -1 311 1 926 208 223 94 chr4 119911870 119912205 -82416142 + MLT1E1 LTR MaLR 171 602 -52 291 194 15 30 chr4 119912343 119912410 -82415937 + MLT1E1 LTR MaLR 559 624 0 1694 159 72 0 chr4 119912739 119913016 -82415331 - AluJb SINE Alu -9 303 7 2288 84 3 0 chr4 119913489 119913797 -82414550 - AluSq SINE Alu 0 309 1 295 306 41 29 chr4 119913824 119913994 -82414353 + L2 LINE L2 1852 2023 -1291 481 193 101 8 chr4 119913995 119914114 -82414233 + MER45A DNA AcHobo 5 134 -44 214 358 57 21 chr4 119914308 119914501 -82413846 + L2 LINE L2 2461 2660 -654 2383 94 0 0 chr4 119914617 119914926 -82413421 - AluSg1 SINE Alu 0 309 1 2778 209 117 61 chr4 119915592 119915816 -82412531 - Charlie2a DNA MER1_type -8 2854 2644 1778 139 23 66 chr4 119915816 119916117 -82412230 + AluJb SINE Alu 1 288 -24 2778 209 117 61 chr4 119916117 119916309 -82412038 - Charlie2a DNA MER1_type -218 2644 2464 2082 90 39 0 chr4 119916309 119916588 -82411759 + AluSq SINE Alu 1 290 -23 2778 209 117 61 chr4 119916588 119916613 -82411734 - Charlie2a DNA MER1_type -398 2464 2442 2355 93 10 3 chr4 119916613 119916924 -82411423 + AluSq SINE Alu 1 313 0 2778 209 117 61 chr4 119916924 119917784 -82410563 - Charlie2a DNA MER1_type -420 2442 1477 236 246 0 0 chr4 119917866 119917927 -82410420 - Charlie2b DNA MER1_type -2147 635 575 225 65 0 0 chr4 119919041 119919072 -82409275 + (TC)n Simple_repeat Simple_repeat 2 32 0 452 183 0 0 chr4 119920276 119920369 -82407978 - MER113 DNA MER1_type? -417 104 12 240 250 128 32 chr4 119920786 119920942 -82407405 + L1ME LINE L1 5624 5794 -327 29 0 0 0 chr4 119921144 119921173 -82407174 + AT_rich Low_complexity Low_complexity 1 29 0 222 37 0 0 chr4 119922527 119922554 -82405793 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 438 155 0 71 chr4 119922554 119922638 -82405709 - AluJb SINE Alu -32 280 203 236 345 68 16 chr4 119923072 119923263 -82405084 + L2 LINE L2 1178 1378 -1936 213 94 0 0 chr4 119923513 119923545 -82404802 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 371 354 129 21 chr4 119923557 119924383 -82403964 + L2 LINE L2 1723 2638 -676 448 50 0 0 chr4 119924503 119924563 -82403784 - L1PA6 LINE L1 0 6154 6095 38708 52 2 0 chr4 119924563 119930384 -82397963 - L1PA5 LINE L1 -26 6443 612 727 63 1 0 chr4 119930369 119930463 -82397884 - L1PA5 LINE L1 -6048 413 2 * 350 280 50 0 chr4 119930799 119930899 -82397448 + L2 LINE L2 3208 3312 -1 466 291 50 6 chr4 119931423 119931602 -82396745 + MIR SINE MIR 42 228 -34 186 256 0 0 chr4 119931707 119931746 -82396601 - L3 LINE CR1 -2 1575 1537 * 526 281 65 13 chr4 119931714 119931867 -82396480 - MIR3 SINE MIR -5 203 43 199 262 87 19 chr4 119932095 119932198 -82396149 - MIR SINE MIR -5 257 148 2377 68 3 0 chr4 119933065 119933359 -82394988 - AluY SINE Alu -16 295 1 2534 251 339 30 chr4 119933861 119934228 -82394119 - L2 LINE L2 -1000 2314 2061 2077 128 0 3 chr4 119934228 119934518 -82393829 + AluSx SINE Alu 1 289 -23 2534 251 339 30 chr4 119934518 119935624 -82392723 - L2 LINE L2 -1253 2061 387 2277 102 10 7 chr4 119935664 119935969 -82392378 - AluSx SINE Alu -6 306 1 4199 151 98 10 chr4 119936803 119937617 -82390730 - L1MB3 LINE L1 -2 6181 5296 2847 220 46 7 chr4 119937845 119938540 -82389807 - L1MB3 LINE L1 -811 5335 4614 188 312 172 0 chr4 119938954 119939047 -82389300 - L2 LINE L2 0 3272 3164 430 257 82 55 chr4 119939095 119939278 -82389069 - MIR SINE MIR -55 207 20 220 367 62 8 chr4 119939462 119939590 -82388757 - L2 LINE L2 0 3272 3138 191 348 99 46 chr4 119939739 119940084 -82388263 - L2 LINE L2 -509 2805 2443 9220 197 18 8 chr4 119940197 119941677 -82386670 - L1 LINE L1 -1348 4798 3293 2385 78 0 3 chr4 119941677 119941984 -82386363 - AluY SINE Alu -5 306 1 9220 197 18 8 chr4 119941984 119942434 -82385913 - L1 LINE L1 -2853 3293 2849 623 221 0 29 chr4 119943292 119943428 -82384919 - L2 LINE L2 -11 3302 3171 272 342 114 0 chr4 119944169 119944283 -82384064 + L2 LINE L2 3136 3262 -10 1574 223 47 62 chr4 119944533 119944833 -82383514 - LTR40c LTR ERVL 0 465 162 2589 62 0 0 chr4 119944833 119945139 -82383208 + AluY SINE Alu 1 306 -5 1574 223 47 62 chr4 119945139 119945232 -82383115 - LTR40c LTR ERVL -303 162 78 1398 204 23 26 chr4 119945232 119945564 -82382783 - AluJo SINE Alu 0 312 1 1574 223 47 62 chr4 119945564 119945639 -82382708 - LTR40c LTR ERVL -387 78 3 216 158 0 0 chr4 119945671 119945709 -82382638 + L2 LINE L2 3267 3304 -9 348 189 54 90 chr4 119947193 119947304 -82381043 + L2 LINE L2 3207 3313 0 467 297 136 25 chr4 119947936 119948172 -82380175 + MIR SINE MIR 1 262 0 1519 180 0 54 chr4 119948215 119948532 -82379815 - AluJo SINE Alu -12 300 1 346 361 62 37 chr4 119949688 119949929 -82378418 + L2 LINE L2 3026 3272 0 221 209 23 0 chr4 119950629 119950672 -82377675 + L2 LINE L2 3265 3308 -5 4042 305 76 32 chr4 119951347 119953410 -82374937 - HERVL LTR ERVL -865 4789 2637 1182 297 44 16 chr4 119953393 119953821 -82374526 - HERVL LTR ERVL -3540 2224 1785 * 297 200 158 42 chr4 119953924 119954019 -82374328 - HERVL LTR ERVL -4113 1651 1546 189 78 20 39 chr4 119954681 119954732 -82373615 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 22 0 0 0 chr4 119954751 119954773 -82373574 + AT_rich Low_complexity Low_complexity 1 22 0 291 197 16 27 chr4 119954789 119954884 -82373463 - L1ME2 LINE L1 -66 6098 6035 2286 128 0 0 chr4 119954938 119955250 -82373097 + AluSx SINE Alu 1 312 0 2159 93 10 23 chr4 119955768 119956069 -82372278 + AluSp SINE Alu 5 301 -12 234 0 0 0 chr4 119956787 119956813 -82371534 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 508 157 0 45 chr4 119956859 119956948 -82371399 + L2 LINE L2 3229 3313 0 219 279 49 0 chr4 119957210 119957271 -82371076 + MIR SINE MIR 86 149 -113 241 167 26 51 chr4 119957306 119957384 -82370963 - L1MB8 LINE L1 -1 6177 6102 308 248 0 14 chr4 119957475 119957577 -82370770 - L1 LINE L1 -2444 3702 3603 29 60 0 0 chr4 119957935 119957985 -82370362 + AT_rich Low_complexity Low_complexity 1 50 0 1584 200 6 31 chr4 119958200 119958520 -82369827 + AluJo SINE Alu 1 312 0 33 0 0 0 chr4 119958538 119958571 -82369776 + AT_rich Low_complexity Low_complexity 1 33 0 2163 113 3 0 chr4 119958762 119959053 -82369294 - AluSx SINE Alu -20 292 1 23 33 0 0 chr4 119960320 119960350 -82367997 + AT_rich Low_complexity Low_complexity 1 30 0 180 77 0 0 chr4 119961894 119961920 -82366427 + (TG)n Simple_repeat Simple_repeat 2 27 0 621 292 49 5 chr4 119963502 119963687 -82364660 - MIR SINE MIR -51 211 19 473 235 86 31 chr4 119965419 119965581 -82362766 + MIR SINE MIR 9 179 -83 789 202 16 90 chr4 119966438 119966673 -82361674 - L1MC5 LINE L1 -36 7925 7717 2179 98 4 0 chr4 119966673 119966950 -82361397 - AluSp SINE Alu -35 278 1 789 202 16 90 chr4 119966950 119967026 -82361321 - L1MC5 LINE L1 -244 7717 7637 275 108 0 0 chr4 119969990 119970027 -82358320 + MADE1 DNA Mariner 43 79 -1 21 0 0 0 chr4 119970172 119970193 -82358154 + AT_rich Low_complexity Low_complexity 1 21 0 403 296 26 0 chr4 119970214 119970329 -82358018 - MIR SINE MIR -3 259 142 2138 118 3 0 chr4 119970350 119970639 -82357708 - AluY SINE Alu -21 290 1 371 255 184 0 chr4 119970764 119970862 -82357485 - MIR SINE MIR -130 132 17 2164 129 10 0 chr4 119972259 119972561 -82355786 - AluSx SINE Alu -7 305 1 1339 158 14 25 chr4 119973188 119973495 -82354852 + MER2 DNA MER2_type 1 345 0 266 246 184 18 chr4 119973552 119973666 -82354681 - L1ME3A LINE L1 -265 5888 5756 1953 160 3 16 chr4 119973667 119974062 -82354285 - AluJb SINE Alu 0 391 1 1080 269 62 32 chr4 119974062 119974373 -82353974 - L1ME3A LINE L1 -378 5767 5467 2043 138 0 3 chr4 119974373 119974690 -82353657 + AluSx SINE Alu 1 316 0 1080 269 62 32 chr4 119974690 119975146 -82353201 - L1ME3A LINE L1 -678 5467 4968 2009 155 0 7 chr4 119975243 119975553 -82352794 - AluSx SINE Alu -2 310 3 23 33 0 0 chr4 119975595 119975625 -82352722 + AT_rich Low_complexity Low_complexity 1 30 0 379 237 130 122 chr4 119975658 119976012 -82352335 - L1ME3A LINE L1 -1447 4682 4326 259 180 66 0 chr4 119976319 119976380 -82351967 - L2 LINE L2 -685 2629 2565 2748 128 12 53 chr4 119980700 119981194 -82347153 - L1MA8 LINE L1 -142 6149 5676 634 115 0 0 chr4 119981250 119981337 -82347010 - L1M2 LINE L1 -539 5752 5666 318 263 43 52 chr4 119981531 119981771 -82346576 - L1ME3A LINE L1 -4807 1503 1116 283 278 42 0 chr4 119981776 119981848 -82346499 - MER2 DNA MER2_type -2 343 269 1183 126 5 5 chr4 119981858 119982057 -82346290 + L1PB1 LINE L1 2 200 -6663 13725 146 55 7 chr4 119982059 119987992 -82340355 + L1PB1 LINE L1 636 6864 -3 376 228 99 40 chr4 119987972 119988174 -82340173 + L1ME4a LINE L1 5852 6065 -56 * 23 92 0 0 chr4 119988194 119988259 -82340088 + AT_rich Low_complexity Low_complexity 1 65 0 757 180 169 0 chr4 119988265 119988443 -82339904 - MER2 DNA MER2_type -136 209 2 760 265 42 87 chr4 119988464 119988692 -82339655 - L1ME3A LINE L1 -4924 1195 958 1980 112 0 53 chr4 119988692 119988996 -82339351 - AluSx SINE Alu -15 297 10 760 265 42 87 chr4 119988996 119989431 -82338916 - L1ME3A LINE L1 -5161 958 562 21 0 0 0 chr4 119989432 119989453 -82338894 + AT_rich Low_complexity Low_complexity 1 21 0 597 294 88 90 chr4 119989478 119989958 -82338389 - L1ME3A LINE L1 -5638 481 3 1195 117 6 6 chr4 119990320 119990491 -82337856 + AluSg/x SINE Alu 133 303 -9 354 360 43 46 chr4 119991855 119992381 -82335966 + L2 LINE L2 2491 3065 -248 215 330 85 17 chr4 119992709 119992827 -82335520 - MIR3 SINE MIR -17 191 66 2263 102 13 0 chr4 119992991 119993296 -82335051 - AluY SINE Alu -2 309 1 1555 139 111 9 chr4 119993311 119993660 -82334687 - L1MA8 LINE L1 -1 6290 5907 292 290 32 21 chr4 119994203 119994296 -82334051 - L3 LINE CR1 -4 1573 1480 13373 127 15 36 chr4 119994316 119994398 -82333949 - Tigger1 DNA MER2_type 0 2418 2336 651 200 42 0 chr4 119994398 119994518 -82333829 + FLAM_C SINE Alu 2 126 -7 13373 127 15 36 chr4 119994518 119995962 -82332385 - Tigger1 DNA MER2_type -82 2336 955 1480 145 5 0 chr4 119995962 119996183 -82332164 - AluJo SINE Alu -6 306 85 13373 127 15 36 chr4 119996183 119996985 -82331362 - Tigger1 DNA MER2_type -1463 955 138 371 239 80 26 chr4 120000867 120000980 -82327367 + MER94 DNA DNA 15 133 -1 264 316 56 82 chr4 120001588 120001857 -82326490 - L2 LINE L2 -86 3186 2925 494 365 29 4 chr4 120002002 120002243 -82326104 - L2 LINE L2 -792 2522 2276 615 278 106 17 chr4 120002284 120002586 -82325761 - MER46C DNA MER2_type -7 331 3 219 69 0 0 chr4 120003069 120003098 -82325249 + (T)n Simple_repeat Simple_repeat 1 29 0 31 44 0 0 chr4 120004068 120004113 -82324234 + AT_rich Low_complexity Low_complexity 1 45 0 1750 152 56 48 chr4 120004520 120004875 -82323472 - MER47A DNA MER2_type 0 366 9 282 309 62 21 chr4 120004886 120004983 -82323364 - MIR SINE MIR -105 157 57 933 180 24 29 chr4 120005098 120005304 -82323043 + MER3 DNA MER1_type 5 209 0 677 220 43 27 chr4 120005312 120005498 -82322849 + MER5A DNA MER1_type 1 189 0 232 289 13 26 chr4 120006122 120006198 -82322149 - MIR SINE MIR -121 141 67 21 0 0 0 chr4 120008467 120008488 -82319859 + AT_rich Low_complexity Low_complexity 1 21 0 2608 82 8 0 chr4 120008564 120008920 -82319427 - L1PA13 LINE L1 -4 6159 5801 288 255 59 39 chr4 120009449 120009551 -82318796 - L2 LINE L2 0 3272 3169 304 218 197 21 chr4 120009619 120009761 -82318586 - MIR SINE MIR -12 250 84 2212 101 0 7 chr4 120009835 120010131 -82318216 - AluSc SINE Alu -15 294 1 343 325 179 11 chr4 120010530 120010887 -82317460 + L2 LINE L2 2311 2727 -587 342 293 62 124 chr4 120010960 120011346 -82317001 + L2 LINE L2 2856 3217 -55 323 44 22 0 chr4 120011372 120011417 -82316930 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 334 304 84 18 chr4 120011865 120012083 -82316264 + MLT1I LTR MaLR 58 258 -151 1414 231 92 17 chr4 120012217 120012620 -82315727 + MLT1C LTR MaLR 1 433 -34 570 324 57 57 chr4 120012927 120013263 -82315084 + L2 LINE L2 2281 2616 -698 240 109 0 0 chr4 120013270 120013316 -82315031 - MADE1 DNA Mariner 0 80 35 1524 179 3 34 chr4 120013320 120013616 -82314731 - AluJb SINE Alu -23 289 3 937 263 71 42 chr4 120013669 120014050 -82314297 - MLT1I LTR MaLR 0 409 18 200 33 0 33 chr4 120014717 120014747 -82313600 + (TA)n Simple_repeat Simple_repeat 2 30 0 555 283 17 29 chr4 120014774 120014947 -82313400 - MIR3 SINE MIR -4 204 34 22 0 0 0 chr4 120015231 120015253 -82313094 + AT_rich Low_complexity Low_complexity 1 22 0 283 197 28 0 chr4 120015824 120015895 -82312452 - MER116 DNA Mariner -2 78 6 265 276 57 48 chr4 120015914 120016019 -82312328 - MIR SINE MIR -72 190 85 1125 231 174 22 chr4 120016249 120016847 -82311500 - Charlie7 DNA MER1_type 0 2612 1924 371 259 108 0 chr4 120016964 120017103 -82311244 - Charlie7 DNA MER1_type -895 1717 1564 336 198 121 17 chr4 120017293 120017409 -82310938 - Charlie7 DNA MER1_type -2418 194 67 349 285 124 34 chr4 120017479 120017557 -82310790 - MIR SINE MIR -13 249 179 1804 192 3 0 chr4 120017557 120017864 -82310483 - AluSx SINE Alu -4 308 1 349 285 124 34 chr4 120017864 120017960 -82310387 - MIR SINE MIR -83 179 59 546 90 0 13 chr4 120018197 120018275 -82310072 + MADE1 DNA Mariner 1 77 -3 269 327 9 35 chr4 120018599 120018712 -82309635 - MER5A DNA MER1_type -38 151 42 3239 291 162 29 chr4 120018738 120019076 -82309271 - L2 LINE L2 -157 3156 2864 1702 148 3 50 chr4 120019076 120019373 -82308974 - AluJo SINE Alu -16 296 14 3239 291 162 29 chr4 120019373 120020373 -82307974 - L2 LINE L2 -449 2864 1998 4667 56 0 0 chr4 120020373 120020949 -82307398 - L1PA8 LINE L1 -5 6167 5592 3239 291 162 29 chr4 120020949 120021415 -82306932 - L2 LINE L2 -1315 1998 1125 798 194 19 6 chr4 120021782 120021942 -82306405 - MER5B DNA MER1_type -5 173 12 1149 302 50 22 chr4 120021954 120022414 -82305933 - L2 LINE L2 -2187 1127 655 213 214 0 0 chr4 120023398 120023440 -82304907 + (TG)n Simple_repeat Simple_repeat 1 42 0 540 289 107 5 chr4 120025130 120025327 -82303020 - MIR SINE MIR -12 250 34 2017 229 70 9 chr4 120025439 120026011 -82302336 - L1MEc LINE L1 -5509 887 281 2168 129 0 3 chr4 120026360 120026662 -82301685 - AluSg SINE Alu -9 301 1 3648 152 25 14 chr4 120026768 120027230 -82301117 + L1MB2 LINE L1 5494 5968 -203 4170 122 52 12 chr4 120027230 120027910 -82300437 + MER39 LTR ERV1 1 707 0 3648 152 25 14 chr4 120027910 120028113 -82300234 + L1MB2 LINE L1 5968 6167 -4 886 159 13 13 chr4 120028121 120028272 -82300075 + FRAM SINE Alu 2 152 -14 21 36 0 0 chr4 120028272 120028300 -82300047 + AT_rich Low_complexity Low_complexity 1 28 0 238 299 58 0 chr4 120028308 120028395 -82299952 + MIR SINE MIR 44 135 -73 2257 107 3 3 chr4 120028615 120028914 -82299433 + AluSg SINE Alu 2 300 -10 2175 123 0 10 chr4 120029261 120029561 -82298786 - AluSx SINE Alu -15 297 1 448 172 43 26 chr4 120030906 120031022 -82297325 - L1MEc LINE L1 -5979 417 300 794 268 56 16 chr4 120031029 120031279 -82297068 + MIR SINE MIR 1 255 -7 2244 103 0 0 chr4 120032011 120032312 -82296035 - AluSx SINE Alu -11 301 1 1829 176 7 0 chr4 120034204 120034506 -82293841 - AluJb SINE Alu -8 304 1 2198 114 0 3 chr4 120035112 120035409 -82292938 + AluSq SINE Alu 1 296 -17 583 302 83 48 chr4 120035686 120036143 -82292204 + L1MEd LINE L1 241 713 -5406 2159 120 13 3 chr4 120036143 120036452 -82291895 + AluSx SINE Alu 1 312 0 520 243 78 19 chr4 120036677 120036867 -82291480 - MER5C DNA MER1_type -94 230 29 340 240 231 0 chr4 120036867 120036971 -82291376 - MER5A DNA MER1_type -1 188 61 330 329 66 7 chr4 120037150 120037302 -82291045 + L1MEd LINE L1 983 1143 -4976 1910 159 0 7 chr4 120037379 120037681 -82290666 + AluJo SINE Alu 1 300 -12 371 301 83 15 chr4 120037717 120037944 -82290403 + L1MEd LINE L1 1183 1631 -859 433 289 61 51 chr4 120038103 120038267 -82290080 + L1M4 LINE L1 3665 3835 -2311 1872 176 3 0 chr4 120038267 120038573 -82289774 - AluJo SINE Alu -5 307 1 433 289 61 51 chr4 120038573 120038720 -82289627 + L1M4 LINE L1 3835 3979 -2167 1508 223 57 131 chr4 120038723 120039527 -82288820 - LTR41 LTR ERVL -16 757 13 623 316 68 12 chr4 120039550 120039873 -82288474 + L1M4 LINE L1 3973 4313 -1833 220 319 0 0 chr4 120040076 120040145 -82288202 - L2 LINE L2 -1 3312 3244 314 237 10 0 chr4 120040263 120040360 -82287987 + GA-rich Low_complexity Low_complexity 2 99 0 223 262 341 8 chr4 120040609 120040735 -82287612 + MIR SINE MIR 89 256 -6 201 74 0 0 chr4 120040736 120040763 -82287584 + (TTA)n Simple_repeat Simple_repeat 1 27 0 383 192 141 20 chr4 120040763 120040856 -82287491 + L2 LINE L2 3166 3270 -2 * 629 295 14 19 chr4 120040855 120041065 -82287282 - L2 LINE L2 -13 3300 3092 264 217 0 17 chr4 120041066 120041126 -82287221 - MLT1H1 LTR MaLR 0 555 497 227 261 201 54 chr4 120041160 120041344 -82287003 - MLT1G1-int LTR MaLR -26 1345 1135 258 32 0 0 chr4 120041621 120041652 -82286695 + (GA)n Simple_repeat Simple_repeat 2 32 0 2080 101 4 0 chr4 120041652 120041919 -82286428 - AluSx SINE Alu -44 268 1 4694 139 53 4 chr4 120042387 120043086 -82285261 - MER44D DNA MER2_type 0 605 1 267 372 17 21 chr4 120043087 120043326 -82285021 - MLT1G1-int LTR MaLR -833 538 301 1086 249 206 30 chr4 120043393 120043892 -82284455 - MLT1G1 LTR MaLR -8 587 1 941 306 18 22 chr4 120043910 120044185 -82284162 - L2 LINE L2 -236 3077 2804 233 282 94 12 chr4 120044895 120044980 -82283367 + MIR SINE MIR 39 130 -132 1057 225 101 51 chr4 120045642 120046037 -82282310 + LTR52 LTR ERVL 2 416 -5 296 328 140 17 chr4 120046073 120046341 -82282006 - L2 LINE L2 -264 3049 2753 21 36 0 0 chr4 120047023 120047051 -82281296 + AT_rich Low_complexity Low_complexity 1 28 0 411 157 0 0 chr4 120048066 120048136 -82280211 + L1MA7 LINE L1 6203 6272 -19 37 52 0 0 chr4 120048159 120048217 -82280130 + AT_rich Low_complexity Low_complexity 1 58 0 272 258 0 0 chr4 120048631 120048697 -82279650 + L2 LINE L2 3207 3272 0 338 275 20 60 chr4 120048934 120049083 -82279264 - MIR SINE MIR -89 173 31 638 265 79 43 chr4 120049308 120049587 -82278760 + L2 LINE L2 3025 3313 0 242 303 0 15 chr4 120050274 120050340 -82278007 - MER5A DNA MER1_type 0 189 125 1974 164 0 19 chr4 120050340 120050689 -82277658 + AluJb SINE Alu 2 344 0 370 360 0 8 chr4 120050692 120050817 -82277530 + MER5A DNA MER1_type 66 189 0 1681 183 88 6 chr4 120053966 120054294 -82274053 - MLT1A1 LTR MaLR -10 355 1 557 240 53 18 chr4 120054588 120054759 -82273588 - MER5B DNA MER1_type -1 177 1 377 321 150 62 chr4 120056365 120056864 -82271483 + L1MEd LINE L1 10 552 -5567 779 201 25 6 chr4 120057009 120057168 -82271179 - MIR SINE MIR -31 231 70 1927 195 96 19 chr4 120057189 120057605 -82270742 + MLT1C LTR MaLR 15 462 -5 426 281 62 26 chr4 120057626 120057818 -82270529 + L1MEd LINE L1 1057 1255 -4864 412 281 19 3 chr4 120057879 120058045 -82270302 + L1M1 LINE L1 2679 2923 -4802 520 327 82 62 chr4 120059569 120059921 -82268426 - L3 LINE CR1 -19 1558 1200 185 388 31 0 chr4 120060018 120060116 -82268231 - MIR SINE MIR 0 262 162 502 289 162 20 chr4 120060249 120060453 -82267894 - MIR SINE MIR -29 233 1 26 0 0 0 chr4 120060675 120060701 -82267646 + AT_rich Low_complexity Low_complexity 1 26 0 339 301 44 0 chr4 120061213 120061326 -82267021 + L2 LINE L2 3196 3313 0 303 28 0 0 chr4 120061600 120061636 -82266711 + (TG)n Simple_repeat Simple_repeat 2 37 0 700 330 51 22 chr4 120061953 120062308 -82266039 + MLT1I LTR MaLR 13 377 -32 314 112 28 41 chr4 120062611 120062661 -82265686 - L1PA13 LINE L1 -385 5776 5727 2912 81 46 15 chr4 120062661 120062705 -82265642 + L1PA13 LINE L1 5757 5798 -365 2263 112 76 25 chr4 120062705 120063062 -82265285 - THE1C LTR MaLR 0 375 1 2912 81 46 15 chr4 120063062 120063406 -82264941 + L1PA13 LINE L1 5798 6163 0 314 112 28 41 chr4 120063406 120063421 -82264926 - L1P3 LINE L1 -434 5727 5718 512 143 31 20 chr4 120063421 120063519 -82264828 + L1MB7 LINE L1 6086 6184 0 314 112 28 41 chr4 120063519 120063536 -82264811 - L1P3 LINE L1 -443 5718 5702 568 279 7 7 chr4 120063945 120064081 -82264266 + LTR16B LTR ERVL 30 165 -299 1294 129 181 48 chr4 120064155 120064426 -82263921 + AluSg1 SINE Alu 1 307 -2 478 279 79 18 chr4 120064426 120064591 -82263756 + LTR16B LTR ERVL 290 464 0 575 280 20 55 chr4 120064615 120064908 -82263439 + L1M4 LINE L1 3850 4132 -2014 423 236 19 0 chr4 120064893 120064999 -82263348 + L1MC5 LINE L1 7117 7224 -737 * 265 210 111 0 chr4 120065240 120065321 -82263026 + L1MC5 LINE L1 7840 7929 -32 996 237 23 18 chr4 120065588 120065807 -82262540 + MER58A DNA MER1_type 3 222 -2 617 248 62 16 chr4 120066435 120066677 -82261670 + L1MEd LINE L1 896 1148 -4971 681 254 24 6 chr4 120066704 120066873 -82261474 - L2 LINE L2 -1295 2019 1848 1189 173 62 4 chr4 120066883 120067108 -82261239 - MLT1E LTR MaLR -1 592 355 24 0 0 0 chr4 120067117 120067141 -82261206 + AT_rich Low_complexity Low_complexity 1 24 0 219 258 0 0 chr4 120067508 120067570 -82260777 + L2 LINE L2 2997 3058 -214 1844 186 82 86 chr4 120067720 120068258 -82260089 - MLT1F LTR MaLR 0 542 7 22 70 0 0 chr4 120069999 120070042 -82258305 + AT_rich Low_complexity Low_complexity 1 43 0 180 0 0 0 chr4 120070729 120070749 -82257598 + (CAGGC)n Simple_repeat Simple_repeat 4 23 0 577 257 87 16 chr4 120072821 120073004 -82255343 + MIR SINE MIR 34 229 -33 1421 112 0 0 chr4 120073031 120073219 -82255128 + AluSg/x SINE Alu 112 299 -13 249 207 86 0 chr4 120073518 120073576 -82254771 - MER116 DNA Mariner -17 63 1 398 309 133 62 chr4 120073707 120073857 -82254490 + L2 LINE L2 2912 3050 -222 258 32 0 0 chr4 120073857 120073888 -82254459 + (CA)n Simple_repeat Simple_repeat 2 32 0 398 309 133 62 chr4 120073888 120074074 -82254273 + L2 LINE L2 3050 3272 0 275 224 0 60 chr4 120074153 120074220 -82254127 + L2 LINE L2 3209 3271 -1 289 259 107 0 chr4 120075096 120075208 -82253139 + MIR SINE MIR 136 259 -3 2147 228 89 44 chr4 120075600 120076093 -82252254 - MLT1E3 LTR MaLR 0 624 155 1996 120 15 0 chr4 120076093 120076367 -82251980 + AluSx SINE Alu 3 280 -32 239 48 0 48 chr4 120076367 120076409 -82251938 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 2147 228 89 44 chr4 120076409 120076511 -82251836 - MLT1E3 LTR MaLR -468 156 1 4472 253 69 44 chr4 120079128 120080750 -82247597 + L1MCc LINE L1 17 1669 -4887 * 10877 212 3 7 chr4 120080734 120083068 -82245279 + L1P4 LINE L1 2568 4892 -1254 1921 120 59 19 chr4 120083097 120083445 -82244902 + THE1C LTR MaLR 9 375 0 2611 132 9 37 chr4 120083447 120084278 -82244069 + L1P4 LINE L1 4897 5706 -459 444 67 0 0 chr4 120084290 120084350 -82243997 + (TA)n Simple_repeat Simple_repeat 2 61 0 2093 117 7 0 chr4 120084750 120085031 -82243316 - AluSx SINE Alu -29 283 1 282 324 14 0 chr4 120085098 120085240 -82243107 + MER103 DNA DNA 12 155 -11 661 234 57 75 chr4 120085296 120085343 -82243004 - MER58A DNA MER1_type -2197 223 177 1932 108 90 14 chr4 120085343 120085631 -82242716 + AluSp SINE Alu 1 310 -3 661 234 57 75 chr4 120085631 120085810 -82242537 - MER58A DNA MER1_type -2243 177 1 896 206 27 0 chr4 120086096 120086280 -82242067 - MER5A DNA MER1_type 0 189 1 465 268 24 16 chr4 120086696 120086823 -82241524 - MIR SINE MIR -70 192 65 1457 201 7 46 chr4 120087180 120087483 -82240864 - AluJo SINE Alu -21 291 1 299 226 88 20 chr4 120087654 120087756 -82240591 + MIR SINE MIR 93 201 -61 418 205 236 0 chr4 120087785 120087912 -82240435 + MER5A DNA MER1_type 33 189 0 256 227 40 27 chr4 120087921 120087996 -82240351 + L2 LINE L2 3198 3273 -40 445 90 0 26 chr4 120088097 120088175 -82240172 + (TA)n Simple_repeat Simple_repeat 2 77 0 2768 126 54 0 chr4 120088175 120088603 -82239744 + L1PA15 LINE L1 5697 6147 -18 297 301 12 69 chr4 120088827 120089000 -82239347 + L2 LINE L2 3151 3313 0 516 253 63 63 chr4 120089019 120089434 -82238913 + L1MCa LINE L1 1162 1576 -4850 180 0 0 0 chr4 120089515 120089535 -82238812 + (TA)n Simple_repeat Simple_repeat 2 21 0 301 305 0 0 chr4 120089554 120089636 -82238711 - L1MC4 LINE L1 -1347 6695 6614 240 200 0 0 chr4 120089638 120089688 -82238659 + (CA)n Simple_repeat Simple_repeat 2 51 0 2645 73 39 5 chr4 120089688 120090069 -82238278 - MLT2A1 LTR ERVL -50 394 1 27208 71 12 4 chr4 120090070 120093708 -82234639 - HERVL-A1 LTR ERVL -1 5653 1984 1955 52 4 0 chr4 120093707 120093958 -82234389 + HERVL LTR ERVL 239 490 -5164 * 1636 262 31 10 chr4 120093958 120094117 -82234230 - L1M4 LINE L1 -1823 4323 4169 482 78 0 111 chr4 120094117 120094207 -82234140 + MADE1 DNA Mariner 1 80 0 1636 262 31 10 chr4 120094207 120094623 -82233724 - L1M4 LINE L1 -1977 4169 3736 2723 180 4 5 chr4 120094773 120095555 -82232792 + L1P5 LINE L1 4751 5532 -622 639 260 99 10 chr4 120096282 120096520 -82231827 + MIR SINE MIR 4 262 0 491 319 127 55 chr4 120096900 120096948 -82231399 - L2 LINE L2 -560 2754 2711 2094 139 3 0 chr4 120096948 120097251 -82231096 - AluSx SINE Alu -8 304 1 491 319 127 55 chr4 120097251 120097599 -82230748 - L2 LINE L2 -603 2711 2307 2017 148 0 17 chr4 120097599 120097924 -82230423 + AluSx SINE Alu 1 320 0 491 319 127 55 chr4 120097924 120098052 -82230295 - L2 LINE L2 -1007 2307 2190 484 245 158 14 chr4 120098050 120098377 -82229970 - L2 LINE L2 0 3313 2705 * 1289 180 71 44 chr4 120098432 120098799 -82229548 - L1MB8 LINE L1 0 6178 5802 2320 82 7 0 chr4 120098800 120099094 -82229253 - AluSp SINE Alu -16 297 2 2535 33 7 7 chr4 120099098 120099404 -82228943 - AluY SINE Alu -4 307 2 1196 235 4 20 chr4 120099406 120099661 -82228686 - AluJo SINE Alu -18 294 44 1263 131 27 18 chr4 120099714 120099935 -82228412 - L1MB8 LINE L1 -392 5786 5564 851 100 8 17 chr4 120100236 120100356 -82227991 - AluSx SINE Alu -15 297 179 840 132 66 0 chr4 120100355 120100476 -82227871 - AluSx SINE Alu -183 129 1 * 366 145 0 0 chr4 120100554 120100623 -82227724 - LTR30 LTR ERV1 -102 620 552 407 317 81 23 chr4 120100986 120101207 -82227140 - MIR SINE MIR 0 262 29 3268 108 22 69 chr4 120101296 120101887 -82226460 + L1PA13 LINE L1 5599 6161 -2 2243 122 0 0 chr4 120102275 120102569 -82225778 + AluSx SINE Alu 1 294 -18 207 287 207 11 chr4 120103194 120103281 -82225066 - L2 LINE L2 -20 3252 3149 2256 112 0 3 chr4 120103500 120103795 -82224552 - AluSx SINE Alu -18 294 1 2240 249 43 32 chr4 120104747 120105513 -82222834 - L1ME3A LINE L1 -68 6102 5322 2367 90 7 0 chr4 120105513 120105813 -82222534 - AluSp SINE Alu -11 302 1 2240 249 43 32 chr4 120105813 120105962 -82222385 - L1ME3A LINE L1 -848 5322 5176 1754 157 16 39 chr4 120105975 120106147 -82222200 - AluJb SINE Alu -7 305 142 1902 122 0 75 chr4 120106147 120106468 -82221879 - AluSx SINE Alu -15 297 1 1754 157 16 39 chr4 120106468 120106607 -82221740 - AluJb SINE Alu -170 142 1 622 93 0 0 chr4 120106617 120106703 -82221644 - AluSg SINE Alu -14 295 210 1792 109 2 154 chr4 120106703 120107099 -82221248 - LTR14B LTR ERVK 0 608 9 1646 91 5 5 chr4 120107104 120107324 -82221023 - AluSg SINE Alu -90 220 1 1620 182 25 7 chr4 120107412 120107692 -82220655 + AluJb SINE Alu 11 295 -17 534 288 67 8 chr4 120107695 120107962 -82220385 - L1ME3A LINE L1 -1067 5079 4797 1739 173 16 16 chr4 120107989 120108296 -82220051 - AluJo SINE Alu -5 307 1 230 291 70 44 chr4 120108347 120108574 -82219773 - L1ME3A LINE L1 -1481 4665 4433 1754 197 0 0 chr4 120108672 120108967 -82219380 - AluJb SINE Alu -17 295 1 36 23 0 0 chr4 120109067 120109110 -82219237 + AT_rich Low_complexity Low_complexity 1 43 0 874 259 132 40 chr4 120109235 120109790 -82218557 - HAL1 LINE L1 -317 2190 1585 2288 95 16 0 chr4 120110840 120111146 -82217201 + AluSp SINE Alu 3 313 0 1643 174 7 42 chr4 120111582 120111892 -82216455 - AluJo SINE Alu -13 299 1 1632 178 13 26 chr4 120112113 120112416 -82215931 + AluJo SINE Alu 1 299 -13 541 186 31 0 chr4 120112574 120112671 -82215676 - FLAM_A SINE Alu -42 100 1 2234 112 0 3 chr4 120112795 120113098 -82215249 + AluSp SINE Alu 1 302 -11 2410 78 0 0 chr4 120113516 120113809 -82214538 - AluY SINE Alu -16 295 3 2173 93 30 7 chr4 120113982 120114282 -82214065 + AluSx SINE Alu 1 307 -5 1806 161 18 0 chr4 120114317 120114603 -82213744 + AluJb SINE Alu 1 291 -21 24 77 0 0 chr4 120114692 120114744 -82213603 + AT_rich Low_complexity Low_complexity 1 52 0 2194 129 0 0 chr4 120114747 120115057 -82213290 + AluSx SINE Alu 1 310 -2 460 291 54 38 chr4 120115062 120115378 -82212969 + L1ME4a LINE L1 5588 5908 -213 2379 98 0 0 chr4 120115579 120115886 -82212461 + AluSx SINE Alu 1 307 -5 1522 233 38 0 chr4 120116077 120116416 -82211931 + MER119 DNA MER1_type 1 352 -231 2359 103 0 0 chr4 120116424 120116724 -82211623 - AluSq SINE Alu -13 300 1 532 213 53 20 chr4 120116749 120116899 -82211448 + MER119 DNA MER1_type 422 576 -7 24 53 0 0 chr4 120117224 120117262 -82211085 + AT_rich Low_complexity Low_complexity 1 38 0 2151 134 7 0 chr4 120117470 120117768 -82210579 + AluSx SINE Alu 1 300 -12 348 315 207 14 chr4 120117836 120118198 -82210149 - L2 LINE L2 -8 3305 2874 21 0 0 0 chr4 120118405 120118426 -82209921 + AT_rich Low_complexity Low_complexity 1 21 0 2558 203 76 18 chr4 120118743 120119005 -82209342 - MER82 DNA MER2_type -10 643 398 2145 106 14 7 chr4 120119005 120119297 -82209050 + AluSx SINE Alu 1 294 -18 2558 203 76 18 chr4 120119297 120119641 -82208706 - MER82 DNA MER2_type -255 398 2 2013 132 17 0 chr4 120119693 120119981 -82208366 - AluSx SINE Alu -19 293 1 1774 132 28 17 chr4 120120084 120120371 -82207976 - AluSq SINE Alu -7 306 17 2277 85 14 7 chr4 120120508 120120803 -82207544 + AluSq SINE Alu 1 297 -16 384 235 104 9 chr4 120120803 120120918 -82207429 + L1MC4a LINE L1 6509 6634 -1174 483 139 426 0 chr4 120120939 120121054 -82207293 + AluSg/x SINE Alu 130 293 -16 180 176 0 0 chr4 120121059 120121093 -82207254 + (CATA)n Simple_repeat Simple_repeat 4 37 0 25 31 0 0 chr4 120123906 120123938 -82204409 + AT_rich Low_complexity Low_complexity 1 32 0 206 261 0 0 chr4 120124217 120124263 -82204084 + L2 LINE L2 3268 3313 0 21 0 0 0 chr4 120124331 120124352 -82203995 + AT_rich Low_complexity Low_complexity 1 21 0 1552 195 0 46 chr4 120124384 120124530 -82203817 + AluJo SINE Alu 1 127 -185 1673 187 3 16 chr4 120124530 120124835 -82203512 + AluJo SINE Alu 1 301 -11 1552 195 0 46 chr4 120124835 120124995 -82203352 + AluJo SINE Alu 127 293 -19 205 323 81 30 chr4 120125006 120125105 -82203242 - L2 LINE L2 -12 3260 3157 2438 74 0 10 chr4 120125322 120125621 -82202726 + AluSp SINE Alu 3 298 -15 1882 168 7 0 chr4 120125992 120126296 -82202051 + AluJb SINE Alu 1 306 -6 21 57 0 0 chr4 120126297 120126332 -82202015 + AT_rich Low_complexity Low_complexity 1 35 0 2269 120 0 0 chr4 120126341 120126640 -82201707 + AluSx SINE Alu 2 300 -12 2053 133 7 0 chr4 120126839 120127132 -82201215 + AluSq SINE Alu 1 295 -18 1618 98 30 4 chr4 120127268 120127502 -82200845 + AluSx SINE Alu 58 297 -15 817 284 44 0 chr4 120127521 120127746 -82200601 + MIR SINE MIR 13 247 -15 754 188 0 14 chr4 120127758 120127902 -82200445 - FLAM_C SINE Alu -1 142 1 402 179 22 128 chr4 120127902 120127988 -82200359 - L1MA4 LINE L1 -123 6177 6118 2259 96 0 7 chr4 120127988 120128290 -82200057 + AluSx SINE Alu 1 300 -12 402 179 22 128 chr4 120128290 120128382 -82199965 - L1MA4 LINE L1 -182 6118 6018 21 57 0 0 chr4 120128644 120128679 -82199668 + AT_rich Low_complexity Low_complexity 1 35 0 300 293 27 5 chr4 120128817 120128923 -82199424 + GA-rich Low_complexity Low_complexity 5 188 0 782 221 84 58 chr4 120129007 120129233 -82199114 + Charlie1b DNA MER1_type 3 234 -289 511 190 49 14 chr4 120129235 120129377 -82198970 + Charlie1b DNA MER1_type 377 523 0 244 118 0 0 chr4 120129471 120129505 -82198842 - U2 snRNA snRNA -154 34 1 418 140 19 65 chr4 120129564 120129671 -82198676 - MER53 DNA DNA -85 104 3 22 35 0 0 chr4 120129877 120129906 -82198441 + AT_rich Low_complexity Low_complexity 1 29 0 789 144 189 7 chr4 120130460 120130613 -82197734 + MER5A DNA MER1_type 3 183 -6 289 345 164 36 chr4 120130716 120130985 -82197362 - L2 LINE L2 -13 3259 2931 2255 71 7 3 chr4 120130985 120131267 -82197080 + AluSq SINE Alu 18 300 -13 289 345 164 36 chr4 120131267 120131356 -82196991 - L2 LINE L2 -341 2931 2855 2448 76 0 0 chr4 120131450 120131752 -82196595 + AluSg SINE Alu 1 302 -8 238 237 51 0 chr4 120131938 120131997 -82196350 - MIR SINE MIR -2 260 199 762 123 41 25 chr4 120132025 120132147 -82196200 - FRAM SINE Alu -15 161 38 283 196 36 27 chr4 120132152 120132264 -82196083 + (TTATA)n Simple_repeat Simple_repeat 2 114 0 234 305 110 34 chr4 120132282 120132400 -82195947 - MIR SINE MIR -11 251 125 311 107 36 0 chr4 120132838 120132894 -82195453 + (CATA)n Simple_repeat Simple_repeat 3 60 0 2026 131 0 0 chr4 120134614 120134904 -82193443 + AluSx SINE Alu 1 290 -22 439 213 144 24 chr4 120134980 120135213 -82193134 + LTR37A LTR ERV1 38 333 -93 318 106 80 0 chr4 120135215 120135273 -82193074 + Tigger3(Golem) DNA MER2_type 1 73 -2956 * 502 239 0 60 chr4 120135271 120135405 -82192942 + Tigger3(Golem) DNA MER2_type 2904 3029 0 336 133 0 27 chr4 120135410 120135485 -82192862 + LTR37A LTR ERV1 351 423 -3 361 143 66 55 chr4 120137197 120137288 -82191059 + MIR3 SINE MIR 107 198 -10 23 0 0 0 chr4 120140104 120140127 -82188220 + GC_rich Low_complexity Low_complexity 1 23 0 2084 117 10 0 chr4 120142314 120142605 -82185742 + AluSx SINE Alu 1 294 -18 2429 77 0 10 chr4 120142609 120142920 -82185427 + AluSq SINE Alu 1 308 -5 1436 199 61 14 chr4 120143565 120143862 -82184485 - AluJo SINE Alu -1 311 1 1820 147 42 3 chr4 120143865 120144150 -82184197 - AluSx SINE Alu -16 296 1 1679 179 21 0 chr4 120144645 120144925 -82183422 + AluJo SINE Alu 1 286 -26 186 43 0 0 chr4 120144928 120144951 -82183396 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 399 231 62 19 chr4 120145180 120145335 -82183012 + MLT1I LTR MaLR 295 407 -2 1032 141 12 6 chr4 120145544 120145714 -82182633 - L1MB2 LINE L1 -39 6132 5962 186 43 0 0 chr4 120147059 120147082 -82181265 + (A)n Simple_repeat Simple_repeat 1 23 0 25 31 0 0 chr4 120147935 120147967 -82180380 + GC_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr4 120149016 120149042 -82179305 + GC_rich Low_complexity Low_complexity 1 26 0 312 326 0 33 chr4 120149233 120149417 -82178930 + CT-rich Low_complexity Low_complexity 2 179 0 197 91 30 0 chr4 120150190 120150223 -82178124 - MIR SINE MIR -59 149 116 1384 81 43 68 chr4 120152291 120152525 -82175822 + L1PA8 LINE L1 5940 6167 -5 300 298 44 0 chr4 120155411 120155525 -82172822 - L2 LINE L2 -1 3271 3153 1621 137 34 41 chr4 120155550 120155843 -82172504 + AluJb SINE Alu 1 291 -21 1985 152 7 0 chr4 120158589 120158898 -82169449 - AluSx SINE Alu -1 311 1 182 294 206 0 chr4 120158928 120159020 -82169327 - L3b LINE CR1 -164 1419 1309 1988 151 0 16 chr4 120159694 120159999 -82168348 - AluJb SINE Alu -12 300 1 537 298 7 0 chr4 120160232 120160383 -82167964 + FRAM SINE Alu 1 151 -25 2199 106 3 7 chr4 120160417 120160709 -82167638 + AluSx SINE Alu 1 291 -21 268 235 34 59 chr4 120161354 120161473 -82166874 - MIR SINE MIR -25 237 122 270 0 0 0 chr4 120161792 120161822 -82166525 + (TA)n Simple_repeat Simple_repeat 2 31 0 180 0 0 0 chr4 120161822 120161842 -82166505 + (T)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr4 120161971 120161993 -82166354 + AT_rich Low_complexity Low_complexity 1 22 0 367 174 47 128 chr4 120162036 120162208 -82166139 + L2 LINE L2 3112 3269 -44 236 89 18 125 chr4 120162547 120162659 -82165688 + (ATAAG)n Simple_repeat Simple_repeat 5 104 0 189 276 17 17 chr4 120162964 120163022 -82165325 + MIR SINE MIR 81 138 -124 1862 162 16 39 chr4 120163214 120163523 -82164824 + AluJo SINE Alu 1 302 -10 395 244 52 7 chr4 120163577 120163712 -82164635 - MIR SINE MIR 0 262 122 23 33 0 0 chr4 120163759 120163789 -82164558 + AT_rich Low_complexity Low_complexity 1 30 0 2126 172 37 0 chr4 120163831 120164239 -82164108 - L1MB4 LINE L1 -5 6175 5753 2295 96 0 7 chr4 120164282 120164583 -82163764 - AluSc SINE Alu -10 299 1 32 0 0 0 chr4 120164591 120164623 -82163724 + AT_rich Low_complexity Low_complexity 1 32 0 12067 73 6 15 chr4 120164945 120165159 -82163188 + L1PA7 LINE L1 3750 3965 -2189 2159 107 21 0 chr4 120165159 120165449 -82162898 + AluSp SINE Alu 1 296 -17 12067 73 6 15 chr4 120165449 120166965 -82161382 + L1PA7 LINE L1 3965 5474 -680 1980 103 85 0 chr4 120166965 120167236 -82161111 + AluSq SINE Alu 1 294 -19 12067 73 6 15 chr4 120167236 120167911 -82160436 + L1PA7 LINE L1 5474 6154 0 1398 201 0 8 chr4 120167979 120168243 -82160104 + AluJo SINE Alu 38 299 -13 2282 112 0 19 chr4 120168245 120168557 -82159790 + AluSx SINE Alu 1 306 -6 408 323 127 6 chr4 120169713 120170075 -82158272 - L2 LINE L2 -1211 2103 1698 345 272 68 96 chr4 120170348 120170530 -82157817 - L1ME4a LINE L1 -59 6062 5876 2786 7 0 7 chr4 120170530 120170833 -82157514 - AluYa5 SINE Alu -10 301 1 345 272 68 96 chr4 120170833 120170887 -82157460 - L1ME4a LINE L1 -245 5876 5822 747 156 33 0 chr4 120170887 120171009 -82157338 - FLAM_A SINE Alu -7 126 1 198 0 0 0 chr4 120171010 120171032 -82157315 + (TATATG)n Simple_repeat Simple_repeat 2 23 0 5702 129 4 14 chr4 120171035 120171542 -82156805 - L1PA16 LINE L1 -11 6155 5645 2065 153 39 28 chr4 120171542 120171902 -82156445 - THE1B LTR MaLR 0 364 1 5702 129 4 14 chr4 120171902 120172598 -82155749 - L1PA16 LINE L1 -521 5645 4944 2114 115 115 15 chr4 120172598 120172929 -82155418 + THE1B LTR MaLR 1 364 0 12219 89 2 0 chr4 120172929 120174505 -82153842 + THE1B-int LTR MaLR 1 1580 0 1945 135 105 15 chr4 120174505 120174839 -82153508 + THE1B LTR MaLR 1 364 0 5702 129 4 14 chr4 120174839 120175121 -82153226 - L1PA16 LINE L1 -1219 4947 4680 345 272 68 96 chr4 120175121 120175274 -82153073 - L1ME4a LINE L1 -301 5820 5682 1496 138 61 12 chr4 120175274 120175520 -82152827 - AluJo SINE Alu -19 293 36 345 272 68 96 chr4 120175520 120175663 -82152684 - L1ME4a LINE L1 -439 5682 5537 23 0 0 0 chr4 120175721 120175744 -82152603 + AT_rich Low_complexity Low_complexity 1 23 0 264 281 66 84 chr4 120176775 120176942 -82151405 - MLT1K LTR MaLR -297 291 128 728 298 71 32 chr4 120176960 120177370 -82150977 + LTR16A1 LTR ERVL 30 455 -2 23 0 0 0 chr4 120177594 120177617 -82150730 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 120177650 120177674 -82150673 + AT_rich Low_complexity Low_complexity 1 24 0 1977 120 7 10 chr4 120177676 120177967 -82150380 - AluSx SINE Alu -22 290 1 393 288 14 22 chr4 120178797 120178936 -82149411 - MIR SINE MIR -55 207 70 1665 189 3 0 chr4 120179265 120179576 -82148771 - AluJb SINE Alu 0 312 1 324 261 24 146 chr4 120179753 120179903 -82148444 - MIR SINE MIR 0 262 164 9384 23 1 0 chr4 120179903 120181735 -82146612 - L1PA3 LINE L1 -3 6152 4303 324 261 24 146 chr4 120181735 120181879 -82146468 - MIR SINE MIR -98 164 4 345 305 71 0 chr4 120182003 120182144 -82146203 + MLT1I LTR MaLR 2 152 -257 228 224 0 20 chr4 120182171 120182220 -82146127 + MLT1I LTR MaLR 138 185 -224 3170 281 100 22 chr4 120182223 120183875 -82144472 + L1MEc LINE L1 39 1818 -4578 22 0 0 0 chr4 120183878 120183900 -82144447 + AT_rich Low_complexity Low_complexity 1 22 0 39251 59 8 1 chr4 120183907 120190000 -82138347 + L1PA5 LINE L1 11 6146 -8 1136 250 86 38 chr4 120190002 120190583 -82137764 + L1MEc LINE L1 1845 2453 -3943 2230 197 44 11 chr4 120190593 120191115 -82137232 - MER74A LTR ERVL 0 558 20 1790 185 3 3 chr4 120191116 120191424 -82136923 + AluSx SINE Alu 1 308 -4 1664 239 100 70 chr4 120191448 120192694 -82135653 + L1M4 LINE L1 2357 3652 -2494 2384 83 0 0 chr4 120192735 120193023 -82135324 - AluSx SINE Alu -23 289 2 2610 154 17 4 chr4 120193026 120193487 -82134860 - L1PB3 LINE L1 0 6154 5688 1850 127 11 18 chr4 120193676 120193960 -82134387 - AluSx SINE Alu -26 286 5 1570 180 22 7 chr4 120194003 120194315 -82134032 - AluJo SINE Alu 0 316 1 2153 143 0 0 chr4 120194327 120194627 -82133720 - AluSx SINE Alu -11 301 2 1783 150 4 0 chr4 120194692 120194966 -82133381 + AluSx SINE Alu 26 300 -12 411 309 94 26 chr4 120194967 120195158 -82133189 - HAL1 LINE L1 -1084 1423 1220 332 335 26 33 chr4 120195172 120195324 -82133023 - HAL1 LINE L1 -2193 314 164 290 220 68 17 chr4 120195634 120195752 -82132595 - HsTC2 DNA Tc2 0 1898 1775 487 160 132 0 chr4 120195772 120195878 -82132469 - L1MB2 LINE L1 -8 6163 6044 201 121 0 0 chr4 120195962 120195995 -82132352 + (CA)n Simple_repeat Simple_repeat 2 34 0 638 174 52 0 chr4 120196003 120196118 -82132229 - FLAM_C SINE Alu -16 127 7 1052 182 26 65 chr4 120196149 120196457 -82131890 - HsTC2 DNA Tc2 -1578 320 25 1119 60 0 8 chr4 120196468 120196601 -82131746 - AluSq/x SINE Alu -180 132 1 2341 107 0 0 chr4 120196807 120197107 -82131240 + AluSx SINE Alu 1 300 -12 242 286 48 41 chr4 120197282 120197429 -82130918 - L2 LINE L2 -8 3305 3158 1434 172 83 14 chr4 120197505 120197795 -82130552 + AluJb SINE Alu 1 310 -2 1278 275 141 44 chr4 120197834 120198392 -82129955 - L2 LINE L2 -337 2977 2324 1474 203 51 49 chr4 120198392 120198781 -82129566 - MLT1B LTR MaLR 0 390 1 1278 275 141 44 chr4 120198781 120198979 -82129368 - L2 LINE L2 -990 2324 2147 576 276 36 53 chr4 120198985 120199162 -82129185 - L2 LINE L2 -1311 2003 1829 2202 125 0 0 chr4 120199162 120199466 -82128881 + AluSx SINE Alu 1 304 -8 576 276 36 53 chr4 120199466 120199513 -82128834 - L2 LINE L2 -1485 1829 1783 1505 228 79 31 chr4 120199538 120200172 -82128175 - L2 LINE L2 -2 3311 2645 578 256 141 26 chr4 120200230 120200421 -82127926 + MIR SINE MIR 39 251 -11 298 297 99 9 chr4 120200462 120200573 -82127774 + L2 LINE L2 3136 3256 -16 2204 110 7 3 chr4 120200608 120200916 -82127431 - AluSx SINE Alu -3 309 1 249 254 218 14 chr4 120203211 120203353 -82124994 + MIR SINE MIR 41 211 -51 190 357 0 12 chr4 120204450 120204534 -82123813 + MIR SINE MIR 174 256 -6 23 0 0 0 chr4 120204874 120204897 -82123450 + AT_rich Low_complexity Low_complexity 1 23 0 1790 184 3 10 chr4 120205305 120205604 -82122743 - AluJb SINE Alu -15 297 1 946 181 11 23 chr4 120206259 120206436 -82121911 - FRAM SINE Alu -1 175 1 325 277 19 58 chr4 120206858 120207013 -82121334 + L1ME4a LINE L1 5795 5943 -178 186 206 0 0 chr4 120207698 120207732 -82120615 + MIR SINE MIR 116 149 -113 1740 166 7 17 chr4 120207735 120208036 -82120311 - AluJo SINE Alu -14 298 1 321 263 8 68 chr4 120208363 120208496 -82119851 - MIR SINE MIR -14 248 124 4006 102 58 30 chr4 120208497 120208802 -82119545 + L1MA4 LINE L1 5583 5878 -422 1755 145 10 30 chr4 120208802 120209106 -82119241 + AluJb SINE Alu 1 298 -14 4006 102 58 30 chr4 120209106 120209496 -82118851 + L1MA4 LINE L1 5878 6297 -3 22 0 0 0 chr4 120209496 120209518 -82118829 + AT_rich Low_complexity Low_complexity 1 22 0 43 76 0 0 chr4 120209960 120210052 -82118295 + AT_rich Low_complexity Low_complexity 1 92 0 204 67 0 0 chr4 120210090 120210120 -82118227 + (TTTTTA)n Simple_repeat Simple_repeat 1 30 0 41133 46 2 1 chr4 120210120 120216268 -82112079 - L1PA4 LINE L1 -2 6153 1 2132 130 19 7 chr4 120216501 120216809 -82111538 - AluSx SINE Alu 0 312 1 475 276 85 40 chr4 120217158 120217535 -82110812 - L1ME3A LINE L1 -232 5938 5545 319 274 26 8 chr4 120217552 120217678 -82110669 - L1M1 LINE L1 -688 5467 5354 426 262 60 30 chr4 120217680 120218016 -82110331 - L1ME3A LINE L1 -821 5325 4980 * 5530 131 31 8 chr4 120218001 120218357 -82109990 - L1PB1 LINE L1 -7 6144 5798 306 0 0 0 chr4 120218357 120218391 -82109956 + (TG)n Simple_repeat Simple_repeat 2 35 0 5530 131 31 8 chr4 120218391 120219395 -82108952 - L1PB1 LINE L1 -353 5798 4753 776 276 50 58 chr4 120219398 120219874 -82108473 - L1ME3A LINE L1 -1133 5013 4542 900 130 0 8 chr4 120219874 120220005 -82108342 + FLAM_C SINE Alu 1 130 -3 776 276 50 58 chr4 120220005 120220132 -82108215 - L1ME3A LINE L1 -1604 4542 4415 321 262 76 47 chr4 120220145 120220441 -82107906 - L1ME3A LINE L1 -2870 3276 2957 2045 128 7 3 chr4 120220441 120220737 -82107610 - AluSx SINE Alu -15 297 1 321 262 76 47 chr4 120220737 120220952 -82107395 - L1ME3A LINE L1 -3189 2957 2750 1977 128 14 0 chr4 120220971 120221252 -82107095 - AluSx SINE Alu -27 285 1 228 143 0 0 chr4 120221266 120221301 -82107046 - U2 snRNA snRNA -153 35 1 302 273 117 19 chr4 120221510 120221766 -82106581 - L1ME3A LINE L1 -3645 2501 2221 26 64 0 0 chr4 120221892 120221939 -82106408 + AT_rich Low_complexity Low_complexity 1 47 0 211 305 0 17 chr4 120222055 120222114 -82106233 + MER5C DNA MER1_type 2 59 -265 2301 94 0 7 chr4 120222528 120222825 -82105522 - AluSc SINE Alu -14 295 1 2189 118 3 3 chr4 120222825 120223130 -82105217 - AluSq SINE Alu -7 306 1 335 331 33 25 chr4 120223132 120223500 -82104847 - HAL1 LINE L1 -1012 1495 1125 1696 184 16 7 chr4 120223606 120223915 -82104432 - AluJb SINE Alu 0 312 1 668 216 0 16 chr4 120223943 120224068 -82104279 - FLAM_A SINE Alu -10 123 1 203 0 37 0 chr4 120225029 120225056 -82103291 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 7524 26 0 0 chr4 120225058 120226046 -82102301 - L1PA3 LINE L1 -3 6152 5157 21 0 0 0 chr4 120226106 120226127 -82102220 + AT_rich Low_complexity Low_complexity 1 21 0 902 196 75 107 chr4 120227505 120227878 -82100469 + MLT1A1 LTR MaLR 1 361 -4 254 263 11 21 chr4 120228162 120228257 -82100090 + (TATATG)n Simple_repeat Simple_repeat 5 98 0 441 303 15 36 chr4 120228650 120228845 -82099502 - Tigger8 DNA MER2_type -380 286 96 2295 86 26 0 chr4 120229349 120229652 -82098695 + AluSp SINE Alu 1 311 -2 25 75 0 0 chr4 120229757 120229810 -82098537 + AT_rich Low_complexity Low_complexity 1 53 0 447 304 110 5 chr4 120230185 120230376 -82097971 + MIR SINE MIR 46 256 -6 1082 249 32 12 chr4 120231703 120231956 -82096391 + MIR SINE MIR 5 262 0 1678 169 0 4 chr4 120232072 120232367 -82095980 + AluJb SINE Alu 16 309 0 2130 116 30 13 chr4 120232898 120233199 -82095148 + AluSx SINE Alu 1 306 -6 400 174 132 34 chr4 120233451 120233597 -82094750 + LTR40b LTR ERVL 1 438 -24 1287 246 53 3 chr4 120233687 120234061 -82094286 + LTR40c LTR ERVL 5 397 -68 2113 136 0 10 chr4 120234082 120234390 -82093957 + AluSx SINE Alu 1 305 -7 30 0 0 0 chr4 120234692 120234722 -82093625 + AT_rich Low_complexity Low_complexity 1 30 0 1857 153 3 14 chr4 120234874 120235156 -82093191 + AluSx SINE Alu 13 291 -21 560 286 81 10 chr4 120235156 120235453 -82092894 - L1ME4a LINE L1 -288 5833 5516 201 125 50 0 chr4 120235581 120235621 -82092726 + A-rich Low_complexity Low_complexity 2 43 0 193 277 170 18 chr4 120236315 120236427 -82091920 + MIR SINE MIR 79 207 -55 24 0 0 0 chr4 120236653 120236677 -82091670 + AT_rich Low_complexity Low_complexity 1 24 0 1863 25 81 0 chr4 120236985 120237221 -82091126 - L1PA4 LINE L1 -272 5883 5629 2337 28 3 0 chr4 120237221 120237502 -82090845 + L1PA4 LINE L1 5873 6155 0 389 244 64 35 chr4 120238624 120238812 -82089535 - MLT1H LTR MaLR -197 212 49 2297 105 3 0 chr4 120239251 120239557 -82088790 - AluSx SINE Alu -3 309 3 22 56 0 0 chr4 120239683 120239719 -82088628 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr4 120240007 120240030 -82088317 + AT_rich Low_complexity Low_complexity 1 23 0 5492 109 60 133 chr4 120240212 120240699 -82087648 - Tigger3b DNA MER2_type -1826 1202 681 2031 113 18 0 chr4 120240699 120240983 -82087364 - AluSx SINE Alu -23 289 1 5492 109 60 133 chr4 120240983 120241340 -82087007 - Tigger3b DNA MER2_type -2347 681 482 2524 46 3 3 chr4 120241340 120241643 -82086704 - AluY SINE Alu -8 303 1 5492 109 60 133 chr4 120241643 120242091 -82086256 - Tigger3b DNA MER2_type -2546 482 3 201 74 0 0 chr4 120242091 120242118 -82086229 + (TATATG)n Simple_repeat Simple_repeat 6 32 0 218 274 21 0 chr4 120242220 120242315 -82086032 + (TATATG)n Simple_repeat Simple_repeat 3 99 0 2756 7 0 0 chr4 120242535 120242833 -82085514 - AluYa5 SINE Alu -13 298 1 1747 171 3 7 chr4 120243446 120243733 -82084614 + AluJb SINE Alu 22 307 -5 190 373 27 18 chr4 120243856 120243966 -82084381 + MIR3 SINE MIR 92 202 -6 239 191 0 0 chr4 120244070 120244112 -82084235 + MER103 DNA DNA 52 93 -73 27 29 0 0 chr4 120244681 120244715 -82083632 + AT_rich Low_complexity Low_complexity 1 34 0 1153 143 76 146 chr4 120244729 120245189 -82083158 - MSTC LTR MaLR 0 428 1 1642 169 43 10 chr4 120245268 120245569 -82082778 - L1MB5 LINE L1 -38 6136 5826 198 0 0 0 chr4 120245571 120245593 -82082754 + (TTA)n Simple_repeat Simple_repeat 1 22 0 4269 165 41 18 chr4 120245598 120246867 -82081480 - L1MB4 LINE L1 -77 6103 4801 277 228 70 0 chr4 120246868 120246925 -82081422 - MLT1A2 LTR MaLR -141 233 173 24 50 0 33 chr4 120247633 120247677 -82080670 + AT_rich Low_complexity Low_complexity 1 44 -14 582 202 0 16 chr4 120247677 120247806 -82080541 + AluJo SINE Alu 1 127 -175 24 50 0 33 chr4 120247806 120247821 -82080526 + AT_rich Low_complexity Low_complexity 44 58 0 267 251 217 17 chr4 120247841 120248076 -82080271 - L1MC4a LINE L1 -1642 6166 5885 885 193 0 75 chr4 120248649 120248862 -82079485 + AluJo SINE Alu 116 312 0 184 125 0 62 chr4 120248866 120248914 -82079433 + (GGAA)n Simple_repeat Simple_repeat 3 47 0 265 105 0 53 chr4 120249033 120249090 -82079257 + (GAAA)n Simple_repeat Simple_repeat 3 56 0 730 168 15 8 chr4 120249098 120249229 -82079118 + FLAM_A SINE Alu 1 132 -1 381 241 38 76 chr4 120249232 120249523 -82078824 - L1ME4a LINE L1 -70 6051 5772 1732 112 0 4 chr4 120249544 120249776 -82078571 - AluSq SINE Alu -81 232 2 2236 99 13 0 chr4 120250009 120250313 -82078034 + AluSx SINE Alu 1 308 -4 37 69 0 0 chr4 120250361 120250433 -82077914 + AT_rich Low_complexity Low_complexity 1 72 0 28 0 0 0 chr4 120250482 120250510 -82077837 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 120252343 120252366 -82075981 + AT_rich Low_complexity Low_complexity 1 23 0 260 254 32 16 chr4 120252811 120252874 -82075473 + L2 LINE L2 3249 3312 -1 510 186 114 12 chr4 120252975 120253142 -82075205 - L1ME4a LINE L1 -6 6115 5932 343 328 94 31 chr4 120253613 120253805 -82074542 - HAL1b LINE L1 -627 721 518 884 185 58 12 chr4 120254078 120254251 -82074096 - MER20 DNA MER1_type -1 218 38 221 0 0 33 chr4 120254591 120254621 -82073726 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2195 108 3 10 chr4 120254623 120254920 -82073427 - AluSx SINE Alu -15 297 3 226 299 90 22 chr4 120256335 120256469 -82071878 - MIR3 SINE MIR -62 146 4 1008 98 0 0 chr4 120256612 120256745 -82071602 - AluSq/x SINE Alu -180 133 1 2252 124 0 3 chr4 120258638 120258944 -82069403 + AluSx SINE Alu 1 305 -7 1087 147 0 23 chr4 120258944 120259121 -82069226 + AluJb SINE Alu 134 306 -6 580 189 174 0 chr4 120259238 120259370 -82068977 - FRAM SINE Alu -20 156 2 234 225 68 105 chr4 120259406 120259597 -82068750 - L1MC4a LINE L1 -1583 6225 6042 1219 157 73 83 chr4 120259697 120259997 -82068350 - AluJo SINE Alu 0 312 16 414 221 0 0 chr4 120260012 120260089 -82068258 - AluJ/FRAM SINE Alu -19 293 217 * 729 194 0 0 chr4 120260088 120260212 -82068135 - AluJo/FLAM SINE Alu -188 124 1 321 198 12 47 chr4 120260231 120260317 -82068030 - L1MC4a LINE L1 -1892 5916 5834 718 215 67 34 chr4 120260940 120261149 -82067198 - L1ME2 LINE L1 -27 6137 5922 2341 70 3 19 chr4 120261580 120261896 -82066451 - AluY SINE Alu 0 311 1 1047 265 48 15 chr4 120261936 120262374 -82065973 - MLT1J LTR MaLR -14 497 7 1001 9 0 0 chr4 120262876 120262989 -82065358 + AluYb8 SINE Alu 206 318 0 180 0 0 0 chr4 120262993 120263013 -82065334 + (TA)n Simple_repeat Simple_repeat 2 21 0 291 54 0 0 chr4 120263013 120263050 -82065297 + (T)n Simple_repeat Simple_repeat 1 37 0 685 181 12 35 chr4 120365357 120365528 -81962819 - THE1C LTR MaLR -206 169 3 1376 146 42 38 chr4 120365619 120365858 -81962489 - AluJb SINE Alu -23 289 50 720 197 0 0 chr4 120365876 120366008 -81962339 - FLAM_C SINE Alu 0 133 2 25 0 0 0 chr4 120366142 120366167 -81962180 + AT_rich Low_complexity Low_complexity 1 25 0 299 220 0 0 chr4 120366264 120366323 -81962024 + L1ME3A LINE L1 6063 6121 -49 255 142 100 50 chr4 120366371 120366437 -81961910 + L1MC5 LINE L1 7612 7673 -288 2374 93 0 0 chr4 120366437 120366737 -81961610 - AluSg SINE Alu -10 300 1 255 142 100 50 chr4 120366737 120366790 -81961557 + L1MC5 LINE L1 7673 7737 -224 1506 77 0 0 chr4 120366894 120367077 -81961270 + AluY SINE Alu 118 300 -11 678 108 0 29 chr4 120367638 120367760 -81960587 + FLAM_A SINE Alu 25 142 0 414 174 0 0 chr4 120368238 120368307 -81960040 - FLAM_A SINE Alu -35 107 39 246 296 0 0 chr4 120368549 120368620 -81959727 - L1MC4 LINE L1 -46 7996 7926 24 67 0 0 chr4 120368682 120368727 -81959620 + AT_rich Low_complexity Low_complexity 1 45 0 946 115 23 0 chr4 120368755 120368885 -81959462 - AluSq/x SINE Alu -180 133 1 198 0 0 0 chr4 120369130 120369152 -81959195 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 2140 107 4 0 chr4 120369154 120369434 -81958913 - AluSx SINE Alu -31 281 1 2401 60 3 28 chr4 120369501 120369820 -81958527 - AluY SINE Alu 0 311 1 1327 147 0 5 chr4 120370006 120370223 -81958124 + AluSg/x SINE Alu 87 302 0 1643 271 137 34 chr4 120370587 120371271 -81957076 - L3 LINE CR1 -199 1378 624 407 363 114 9 chr4 120371308 120371633 -81956714 - L3 LINE CR1 -1120 457 99 2147 128 7 0 chr4 120372094 120372384 -81955963 + AluSp SINE Alu 1 292 -21 195 218 0 0 chr4 120372384 120372439 -81955908 + (TA)n Simple_repeat Simple_repeat 1 55 0 758 178 0 0 chr4 120372483 120372601 -81955746 - FLAM_C SINE Alu -25 118 1 216 97 0 0 chr4 120372604 120372635 -81955712 + (T)n Simple_repeat Simple_repeat 1 31 0 2056 137 30 0 chr4 120375010 120375310 -81953037 + AluSx SINE Alu 1 309 -3 284 144 0 133 chr4 120375699 120375789 -81952558 - L1MA4A LINE L1 -23 6280 6203 23 0 0 0 chr4 120376371 120376394 -81951953 + AT_rich Low_complexity Low_complexity 1 23 0 2473 84 3 0 chr4 120376667 120376977 -81951370 + AluSp SINE Alu 2 312 -1 2468 73 0 10 chr4 120377216 120377530 -81950817 + AluY SINE Alu 1 311 0 922 255 77 14 chr4 120377687 120377973 -81950374 - L3 LINE CR1 -17 1560 1257 2181 122 6 3 chr4 120378220 120378531 -81949816 + AluSx SINE Alu 1 312 0 698 131 39 137 chr4 120378953 120379165 -81949182 - L1P4 LINE L1 -569 5597 5409 25 0 0 0 chr4 120380081 120380106 -81948241 + AT_rich Low_complexity Low_complexity 1 25 0 2193 106 7 3 chr4 120380722 120381023 -81947324 - AluSg SINE Alu -8 302 1 2341 65 7 0 chr4 120381443 120381763 -81946584 - AluY SINE Alu 0 322 1 276 234 0 0 chr4 120381787 120381851 -81946496 + L1ME LINE L1 5775 5838 -332 281 185 0 0 chr4 120381889 120381954 -81946393 - L1ME LINE L1 -409 5757 5693 1051 185 231 4 chr4 120382020 120382165 -81946182 - AluJb SINE Alu -10 292 181 2351 48 48 0 chr4 120382165 120382457 -81945890 - AluY SINE Alu -5 306 1 1051 185 231 4 chr4 120382457 120382549 -81945798 - AluJb SINE Alu -121 181 1 22 0 0 0 chr4 120382855 120382877 -81945470 + AT_rich Low_complexity Low_complexity 1 22 0 890 171 11 34 chr4 120383160 120383178 -81945169 - AluJo/FRAM SINE Alu 0 312 295 2239 111 7 0 chr4 120383178 120383484 -81944863 - AluSg SINE Alu -2 308 1 890 171 11 34 chr4 120383484 120383641 -81944706 - AluJo/FRAM SINE Alu -17 295 141 1950 156 0 3 chr4 120383654 120383956 -81944391 - AluSx SINE Alu -11 301 1 180 77 0 0 chr4 120384050 120384076 -81944271 + (A)n Simple_repeat Simple_repeat 1 26 0 2156 116 20 0 chr4 120384208 120384502 -81943845 - AluSg SINE Alu -8 302 3 2212 123 0 0 chr4 120384561 120384863 -81943484 - AluSx SINE Alu -10 302 1 224 109 0 22 chr4 120386046 120386062 -81942285 + (CTAA)n Simple_repeat Simple_repeat 2 17 -29 2271 79 0 3 chr4 120386062 120386352 -81941995 + AluY SINE Alu 2 290 -21 224 109 0 22 chr4 120386352 120386381 -81941966 + (CTAA)n Simple_repeat Simple_repeat 17 46 0 2081 117 0 0 chr4 120387061 120387332 -81941015 + AluSx SINE Alu 9 282 -30 270 0 0 0 chr4 120387332 120387362 -81940985 + (CA)n Simple_repeat Simple_repeat 1 30 0 778 217 50 22 chr4 120387680 120387860 -81940487 - MER5A DNA MER1_type -2 187 3 2687 179 59 18 chr4 120387962 120388471 -81939876 - MER34 LTR ERV1 0 542 13 2242 77 3 11 chr4 120389047 120389355 -81938992 - AluY SINE Alu 0 307 2 2551 63 0 0 chr4 120389434 120389733 -81938614 - AluSx SINE Alu -13 299 1 2356 105 0 0 chr4 120389779 120390085 -81938262 - AluSq SINE Alu -7 306 1 1262 132 0 0 chr4 120390113 120390287 -81938060 - AluSq SINE Alu -139 174 1 2412 70 0 3 chr4 120391052 120391352 -81936995 + AluY SINE Alu 1 299 -12 1816 122 137 0 chr4 120391757 120392020 -81936327 + AluSx SINE Alu 2 300 -2 243 0 0 0 chr4 120392216 120392243 -81936104 + (TG)n Simple_repeat Simple_repeat 2 28 0 1797 79 18 4 chr4 120392545 120392774 -81935573 - AluSg/x SINE Alu -14 296 65 296 200 13 0 chr4 120393291 120393366 -81934981 + CT-rich Low_complexity Low_complexity 3 78 0 2215 90 48 7 chr4 120393372 120393662 -81934685 - AluSq SINE Alu -11 302 1 1582 103 117 33 chr4 120393664 120393937 -81934410 - AluSg SINE Alu -12 298 3 402 93 0 0 chr4 120393940 120393994 -81934353 + MADE1 DNA Mariner 27 80 0 678 288 72 31 chr4 120394089 120394167 -81934180 - L1M4 LINE L1 -459 5719 5646 2199 110 0 10 chr4 120394167 120394467 -81933880 - AluSx SINE Alu -15 297 1 678 288 72 31 chr4 120394467 120394834 -81933513 - L1M4 LINE L1 -532 5646 5266 2488 91 8 57 chr4 120395112 120395349 -81932998 - L1MA3 LINE L1 0 6305 6093 2362 93 3 0 chr4 120395349 120395650 -81932697 - AluSp SINE Alu -11 302 1 2488 91 8 57 chr4 120395650 120395796 -81932551 - L1MA3 LINE L1 -212 6093 5941 1008 129 0 0 chr4 120396207 120396354 -81931993 + AluSg/x SINE Alu 163 309 -1 207 0 0 0 chr4 120398709 120398732 -81929615 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2073 110 0 0 chr4 120398735 120399017 -81929330 - AluSq SINE Alu -31 282 1 2233 84 7 0 chr4 120399562 120399859 -81928488 - AluSg SINE Alu -10 300 2 303 150 83 0 chr4 120399899 120399959 -81928388 - AluJ/FRAM SINE Alu -7 295 231 1311 100 11 0 chr4 120400083 120400273 -81928074 - MER41B LTR ERV1 0 635 444 2051 134 3 0 chr4 120400288 120400578 -81927769 - AluSx SINE Alu -21 291 1 206 322 89 0 chr4 120400875 120400965 -81927382 + MIR SINE MIR 3 100 -162 1035 186 198 35 chr4 120401962 120402220 -81926127 - AluJo SINE Alu -1 301 2 1592 176 50 0 chr4 120402237 120402516 -81925831 - AluJb SINE Alu -19 293 1 903 159 7 0 chr4 120402859 120402997 -81925350 - Tigger3(Golem) DNA MER2_type -1 3028 2890 2753 95 3 0 chr4 120402997 120403366 -81924981 + MER41A LTR ERV1 1 370 -184 2295 98 0 3 chr4 120403367 120403663 -81924684 + AluSx SINE Alu 1 295 -17 288 53 0 0 chr4 120403664 120403702 -81924645 + (TA)n Simple_repeat Simple_repeat 1 38 0 217 243 14 86 chr4 120403737 120403807 -81924540 + L2 LINE L2 3127 3191 -81 401 261 0 11 chr4 120403868 120403960 -81924387 + MIR3 SINE MIR 109 199 -9 356 236 146 0 chr4 120404088 120404211 -81924136 + Charlie8 DNA MER1_type 64 204 -2213 277 211 87 19 chr4 120404698 120404802 -81923545 - L1MC5 LINE L1 -486 7475 7365 1498 161 122 70 chr4 120404896 120405324 -81923023 - LTR7 LTR ERV1 0 450 1 753 111 0 0 chr4 120405371 120405470 -81922877 - HY3 scRNA scRNA -2 99 1 243 0 0 0 chr4 120405470 120405497 -81922850 + (TTA)n Simple_repeat Simple_repeat 1 27 0 2474 65 3 0 chr4 120405510 120405803 -81922544 + AluY SINE Alu 1 294 -17 1374 111 0 0 chr4 120406254 120406434 -81921913 + AluSq SINE Alu 12 191 -122 4283 127 23 33 chr4 120406537 120406606 -81921741 + L1MA3 LINE L1 5608 5676 -629 1928 148 7 7 chr4 120406606 120406910 -81921437 - AluJb SINE Alu -8 304 1 4283 127 23 33 chr4 120406910 120407543 -81920804 + L1MA3 LINE L1 5676 6303 -2 2390 78 17 0 chr4 120407584 120407880 -81920467 + AluSg SINE Alu 1 301 -9 266 227 147 13 chr4 120407966 120408041 -81920306 + L2 LINE L2 3182 3266 -6 1312 184 4 27 chr4 120408481 120408737 -81919610 - AluJo SINE Alu -14 298 49 251 158 0 0 chr4 120408797 120408835 -81919512 - AluJ/FLAM SINE Alu -216 86 49 2535 59 0 7 chr4 120409139 120409444 -81918903 + AluY SINE Alu 1 303 -8 279 274 27 0 chr4 120409449 120409522 -81918825 + L1MC5 LINE L1 7818 7892 -69 21 36 0 0 chr4 120409580 120409608 -81918739 + AT_rich Low_complexity Low_complexity 1 28 0 499 126 36 45 chr4 120409705 120409816 -81918531 - MER53 DNA DNA -1 188 79 * 1402 220 35 74 chr4 120409807 120410266 -81918081 - MLT1D LTR MaLR -64 441 1 207 0 0 0 chr4 120410671 120410694 -81917653 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 22 35 0 0 chr4 120410789 120410818 -81917529 + AT_rich Low_complexity Low_complexity 1 29 0 690 351 167 24 chr4 120411242 120412092 -81916255 + L2 LINE L2 2289 3268 -4 2160 101 10 3 chr4 120412504 120412801 -81915546 + AluSq SINE Alu 1 299 -14 1005 140 51 6 chr4 120412815 120412993 -81915354 - MER105 DNA DNA -5 199 14 183 80 0 0 chr4 120413039 120413064 -81915283 + (CA)n Simple_repeat Simple_repeat 1 25 0 21 36 0 0 chr4 120413607 120413635 -81914712 + AT_rich Low_complexity Low_complexity 1 28 0 2200 122 0 3 chr4 120413641 120413953 -81914394 + AluSx SINE Alu 1 311 -1 3796 146 31 12 chr4 120413967 120414617 -81913730 + L1MB3 LINE L1 5481 6142 -41 2255 82 20 0 chr4 120414873 120415165 -81913182 + AluSp SINE Alu 1 298 -15 1156 124 0 6 chr4 120415453 120415631 -81912716 + AluSg/x SINE Alu 129 305 -7 258 242 48 0 chr4 120415811 120415873 -81912474 + L2 LINE L2 3242 3306 -7 1604 137 79 7 chr4 120416005 120416283 -81912064 - AluSx SINE Alu -14 298 1 1610 172 36 4 chr4 120416291 120416449 -81911898 - AluJo SINE Alu -24 288 116 288 0 0 0 chr4 120416449 120416481 -81911866 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1610 172 36 4 chr4 120416481 120416601 -81911746 - AluJo SINE Alu -196 116 1 1605 168 3 51 chr4 120416698 120417013 -81911334 - AluJo SINE Alu -5 307 8 274 224 47 65 chr4 120417321 120417428 -81910919 - LTR33 LTR ERVL -5 516 412 830 233 7 0 chr4 120418329 120418479 -81909868 - FRAM SINE Alu -15 151 1 695 241 80 0 chr4 120418532 120418694 -81909653 - MER45A DNA AcHobo -1 177 3 367 312 75 53 chr4 120418946 120419121 -81909226 + L2 LINE L2 2102 2287 -1027 252 0 0 0 chr4 120419121 120419149 -81909198 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 367 312 75 53 chr4 120419149 120419255 -81909092 + L2 LINE L2 2287 2389 -925 2273 94 3 0 chr4 120419267 120419591 -81908756 - AluSq SINE Alu 0 325 1 2233 53 42 7 chr4 120419605 120419888 -81908459 - AluY SINE Alu -18 293 1 243 0 0 0 chr4 120420069 120420096 -81908251 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1996 230 80 6 chr4 120420125 120420603 -81907744 + MLT1F LTR MaLR 30 542 0 234 167 0 0 chr4 120421003 120421063 -81907284 + (CA)n Simple_repeat Simple_repeat 2 61 0 280 295 132 0 chr4 120421069 120421118 -81907229 - L1MA10 LINE L1 -9 6325 6277 228 287 25 41 chr4 120421118 120421240 -81907107 - L1ME1 LINE L1 -68 6098 5979 258 143 20 20 chr4 120421256 120421305 -81907042 - MER3 DNA MER1_type -159 50 2 2080 126 7 0 chr4 120422121 120422415 -81905932 + AluJb SINE Alu 1 296 -16 554 184 105 0 chr4 120423297 120423411 -81904936 + FLAM_A SINE Alu 1 126 -7 363 262 75 19 chr4 120424023 120424130 -81904217 + L2 LINE L2 3142 3254 -18 1957 145 3 7 chr4 120424299 120424603 -81903744 - AluSx SINE Alu -9 303 1 266 221 59 0 chr4 120424603 120424671 -81903676 + MIR SINE MIR 82 153 -109 436 129 14 0 chr4 120424764 120424834 -81903513 - MADE1 DNA Mariner 0 80 10 1154 191 0 40 chr4 120424853 120425078 -81903269 + AluJb SINE Alu 1 216 -96 279 285 123 8 chr4 120425080 120425210 -81903137 - MIR SINE MIR 0 262 118 278 246 123 61 chr4 120425888 120426002 -81902345 - MIR SINE MIR -66 196 76 181 219 0 0 chr4 120426371 120426412 -81901935 - L2 LINE L2 0 3313 3273 579 299 111 0 chr4 120426539 120426773 -81901574 - MIR SINE MIR 0 262 3 497 259 23 15 chr4 120426795 120426926 -81901421 - MER94 DNA DNA -1 133 2 424 278 62 61 chr4 120427071 120427319 -81901028 + MIR SINE MIR 15 262 0 2592 68 3 0 chr4 120427449 120427759 -81900588 + AluSp SINE Alu 1 311 -2 23 54 0 0 chr4 120429739 120429776 -81898571 + AT_rich Low_complexity Low_complexity 1 37 0 382 269 151 8 chr4 120430408 120430527 -81897820 - L2 LINE L2 -7 3306 3171 1023 148 0 44 chr4 120430805 120430987 -81897360 - Tigger5 DNA MER2_type 0 2323 2150 731 155 9 0 chr4 120430975 120431091 -81897256 - Tigger5 DNA MER2_type -2206 117 1 * 409 306 85 58 chr4 120431381 120431618 -81896729 - L1MEc LINE L1 -5493 903 674 2194 87 4 0 chr4 120431618 120431929 -81896418 - AluSg SINE Alu 0 316 5 409 306 85 58 chr4 120431929 120432385 -81895962 - L1MEc LINE L1 -5722 674 190 2518 68 0 3 chr4 120432490 120432801 -81895546 - AluY SINE Alu -1 310 1 2408 75 7 0 chr4 120432803 120433097 -81895250 - AluSg SINE Alu -14 296 1 1469 203 45 21 chr4 120433700 120434030 -81894317 + MER58B DNA MER1_type 1 338 -3 353 143 0 13 chr4 120434409 120434486 -81893861 + (TA)n Simple_repeat Simple_repeat 1 76 0 2508 83 3 0 chr4 120434977 120435289 -81893058 + AluSq SINE Alu 1 313 0 967 164 20 41 chr4 120435722 120435917 -81892430 - AluJo SINE Alu -121 191 1 217 328 221 18 chr4 120435926 120436252 -81892095 + L2 LINE L2 1843 2234 -1080 542 308 126 29 chr4 120436310 120436651 -81891696 - MLT1J LTR MaLR -133 378 5 503 344 111 33 chr4 120436655 120437140 -81891207 + L2 LINE L2 2242 2764 -550 23 0 0 0 chr4 120437217 120437240 -81891107 + AT_rich Low_complexity Low_complexity 1 23 0 202 419 8 0 chr4 120437327 120437451 -81890896 + L2 LINE L2 2795 2919 -395 230 271 0 29 chr4 120437517 120437587 -81890760 + MIR3 SINE MIR 5 72 -136 633 140 9 35 chr4 120437615 120437729 -81890618 - AluSg/x SINE Alu -3 309 199 1592 132 0 13 chr4 120437729 120437964 -81890383 - AluSx SINE Alu -80 232 1 339 316 140 15 chr4 120438160 120438296 -81890051 + L2 LINE L2 3116 3268 -4 2755 180 56 23 chr4 120439263 120439780 -81888567 + MLT2B3 LTR ERVL 1 534 -20 455 165 0 11 chr4 120439780 120439871 -81888476 + (TCCA)n Simple_repeat Simple_repeat 4 93 0 292 192 0 0 chr4 120439871 120439923 -81888424 + MLT2B3 LTR ERVL 503 554 0 2525 84 0 0 chr4 120440007 120440318 -81888029 - AluY SINE Alu 0 311 1 2245 125 0 0 chr4 120441121 120441424 -81886923 - AluSg SINE Alu -7 303 1 543 171 0 0 chr4 120442457 120442545 -81885802 - AluJo SINE Alu -9 303 216 822 198 6 24 chr4 120442546 120442577 -81885770 - AluJo SINE Alu -148 164 134 2218 93 7 0 chr4 120442577 120442867 -81885480 - AluSc SINE Alu -17 292 1 822 198 6 24 chr4 120442867 120443002 -81885345 - AluJo SINE Alu -178 134 1 311 387 23 29 chr4 120443400 120443573 -81884774 - L2 LINE L2 0 3272 3101 209 292 246 31 chr4 120443941 120444266 -81884081 - L2 LINE L2 -589 2725 2331 778 248 155 5 chr4 120445080 120445286 -81883061 - MIR SINE MIR -1 261 25 487 176 12 0 chr4 120445717 120445802 -81882545 - MER41E LTR ERV1 -113 399 314 26 0 0 0 chr4 120445812 120445838 -81882509 + AT_rich Low_complexity Low_complexity 1 26 0 2367 92 0 0 chr4 120445946 120446241 -81882106 + AluSx SINE Alu 1 295 -17 2337 180 31 14 chr4 120446256 120446701 -81881646 - MER31B LTR ERV1 -13 453 1 956 168 62 39 chr4 120446999 120447049 -81881298 + AluJb SINE Alu 82 129 -183 2129 87 7 14 chr4 120447049 120447336 -81881011 + AluSc SINE Alu 4 288 -21 956 168 62 39 chr4 120447336 120447493 -81880854 + AluJb SINE Alu 129 294 -18 623 167 40 0 chr4 120447493 120447619 -81880728 + L1MA8 LINE L1 6155 6285 -6 1796 138 7 36 chr4 120447629 120447934 -81880413 + AluJo SINE Alu 1 296 -16 708 203 72 39 chr4 120447989 120448142 -81880205 - FAM SINE Alu -17 158 1 412 203 209 32 chr4 120448184 120448342 -81880005 - MER63A DNA MER1_type -24 186 1 396 204 68 11 chr4 120448344 120448432 -81879915 - MIR SINE MIR -62 200 108 1294 167 56 56 chr4 120448434 120448721 -81879626 - AluJo SINE Alu -12 300 14 1085 76 0 0 chr4 120448987 120449118 -81879229 + AluSg SINE Alu 1 131 -179 2110 117 7 7 chr4 120449124 120449433 -81878914 + AluSg1 SINE Alu 1 309 0 207 77 51 26 chr4 120449838 120449877 -81878470 + (CAATT)n Simple_repeat Simple_repeat 4 43 0 2312 102 0 0 chr4 120449957 120450262 -81878085 - AluSx SINE Alu -7 305 1 204 171 0 24 chr4 120450303 120450344 -81878003 + (TA)n Simple_repeat Simple_repeat 2 41 0 250 264 81 27 chr4 120450868 120451016 -81877331 - L1ME4a LINE L1 -4 6117 5962 1011 170 236 13 chr4 120451290 120451549 -81876798 + AluSg1 SINE Alu 1 310 0 1634 159 38 0 chr4 120451864 120452154 -81876193 - L1MB2 LINE L1 0 6171 5871 22 35 0 0 chr4 120452330 120452359 -81875988 + AT_rich Low_complexity Low_complexity 1 29 0 2075 120 3 10 chr4 120452368 120452669 -81875678 + AluSx SINE Alu 1 299 -13 201 208 55 31 chr4 120452670 120452751 -81875596 - MIR3 SINE MIR -23 185 101 210 150 0 25 chr4 120453128 120453168 -81875179 + (TGG)n Simple_repeat Simple_repeat 1 39 0 523 275 131 27 chr4 120453197 120453419 -81874928 + MIR SINE MIR 18 262 0 703 269 74 103 chr4 120453615 120454155 -81874192 - MLT1G1 LTR MaLR 0 595 20 339 264 8 72 chr4 120454225 120454315 -81874032 - L2 LINE L2 0 3272 3191 2324 98 0 7 chr4 120454315 120454621 -81873726 + AluSq SINE Alu 1 304 -9 339 264 8 72 chr4 120454621 120454655 -81873692 - L2 LINE L2 -81 3191 3156 296 24 24 0 chr4 120455051 120455092 -81873255 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 2092 109 3 14 chr4 120455518 120455812 -81872535 + AluSg SINE Alu 1 291 -19 1158 165 78 0 chr4 120455996 120456202 -81872145 + AluJb SINE Alu 80 301 -11 1684 154 6 97 chr4 120456425 120456610 -81871737 - AluJo SINE Alu 0 302 102 2148 120 7 3 chr4 120456610 120456909 -81871438 + AluSg SINE Alu 1 300 -10 1684 154 6 97 chr4 120456909 120456920 -81871427 - AluJo SINE Alu -200 102 92 1622 133 91 4 chr4 120456920 120457183 -81871164 + AluSg SINE Alu 2 287 -23 1684 154 6 97 chr4 120457183 120457316 -81871031 - AluJo SINE Alu -210 92 2 609 202 28 0 chr4 120457894 120458003 -81870344 + FLAM_A SINE Alu 5 116 -17 240 35 0 0 chr4 120458006 120458035 -81870312 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1349 166 107 15 chr4 120458197 120458468 -81869879 + AluJo SINE Alu 1 296 -16 575 146 39 0 chr4 120458573 120458676 -81869671 + AluJb SINE Alu 191 297 -15 1067 161 6 0 chr4 120458786 120458948 -81869399 + FRAM SINE Alu 6 168 -8 1544 222 14 10 chr4 120459101 120459233 -81869114 + AluJo SINE Alu 3 133 -169 2546 61 0 10 chr4 120459233 120459544 -81868803 + AluSp SINE Alu 1 308 -5 1544 222 14 10 chr4 120459544 120459708 -81868639 + AluJo SINE Alu 133 300 -2 805 174 8 23 chr4 120459714 120459846 -81868501 + FLAM_A SINE Alu 1 130 -12 393 217 98 11 chr4 120460009 120460101 -81868246 + MIR SINE MIR 17 116 -92 183 42 0 0 chr4 120461448 120461472 -81866875 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 258 81 0 0 chr4 120462776 120462813 -81865534 + (TA)n Simple_repeat Simple_repeat 2 38 0 219 159 0 0 chr4 120463040 120463084 -81865263 - L2 LINE L2 0 3313 3270 2191 104 3 0 chr4 120463430 120463719 -81864628 - AluSx SINE Alu -22 290 1 21 0 0 0 chr4 120463737 120463758 -81864589 + AT_rich Low_complexity Low_complexity 1 21 0 30 69 0 0 chr4 120463963 120464021 -81864326 + AT_rich Low_complexity Low_complexity 1 58 0 2698 238 32 46 chr4 120464195 120464918 -81863429 - MER21B LTR ERV1 -53 810 98 298 228 0 119 chr4 120464968 120465069 -81863278 - MER21B LTR ERV1 -774 89 1 914 108 0 31 chr4 120465268 120465398 -81862949 + AluSq/x SINE Alu 2 127 -186 208 239 0 75 chr4 120465665 120465732 -81862615 + L2 LINE L2 2567 2628 -686 1259 162 0 5 chr4 120465785 120466023 -81862324 + AluJb SINE Alu 86 322 0 258 188 0 0 chr4 120466305 120466353 -81861994 + MLT1J LTR MaLR 100 147 -364 1915 153 0 0 chr4 120466612 120466918 -81861429 + AluJb SINE Alu 1 306 0 2259 124 0 0 chr4 120467183 120467490 -81860857 - AluSg SINE Alu -3 307 1 867 216 18 11 chr4 120467495 120467697 -81860650 + L1MC5 LINE L1 6694 6977 -1065 467 246 123 0 chr4 120467715 120467845 -81860502 - MLT1G1 LTR MaLR -2 593 448 451 228 64 99 chr4 120467848 120468150 -81860197 - MLT1G LTR MaLR -184 406 1 2542 46 3 3 chr4 120468350 120468654 -81859693 - AluY SINE Alu -7 304 1 621 309 27 32 chr4 120468671 120469071 -81859276 + L1MC4 LINE L1 7094 7486 -556 1737 177 3 0 chr4 120469718 120470000 -81858347 - AluJb SINE Alu -29 283 1 23 33 0 0 chr4 120470004 120470034 -81858313 + AT_rich Low_complexity Low_complexity 1 30 0 1199 245 98 62 chr4 120470538 120470571 -81857776 + MER34 LTR ERV1 6 36 -506 2456 117 30 38 chr4 120470571 120470938 -81857409 + THE1B LTR MaLR 1 364 0 1199 245 98 62 chr4 120470938 120471151 -81857196 + MER34 LTR ERV1 36 240 -302 2407 78 0 0 chr4 120471151 120471445 -81856902 + AluY SINE Alu 1 294 -17 1199 245 98 62 chr4 120471445 120471618 -81856729 + MER34 LTR ERV1 240 451 -91 2172 112 3 16 chr4 120471618 120471930 -81856417 + AluSp SINE Alu 1 308 -5 1199 245 98 62 chr4 120471930 120472026 -81856321 + MER34 LTR ERV1 451 542 0 622 214 31 82 chr4 120472139 120472308 -81856039 + MER5A DNA MER1_type 3 162 -27 2071 135 0 20 chr4 120472308 120472611 -81855736 - AluSx SINE Alu -15 297 1 622 214 31 82 chr4 120472611 120472637 -81855710 + MER5A DNA MER1_type 162 188 -1 207 293 88 78 chr4 120472872 120472931 -81855416 - L2 LINE L2 -657 2657 2600 2141 191 87 32 chr4 120472931 120473424 -81854923 - MLT2B1 LTR ERVL 0 520 1 207 293 88 78 chr4 120473424 120473569 -81854778 - L2 LINE L2 -714 2600 2451 357 217 85 107 chr4 120473826 120474114 -81854233 + MLT1G1 LTR MaLR 254 595 0 358 298 26 0 chr4 120474202 120474316 -81854031 - L2 LINE L2 -978 2336 2220 207 0 0 0 chr4 120474348 120474371 -81853976 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1954 159 0 0 chr4 120474481 120474777 -81853570 + AluJb SINE Alu 1 296 -16 267 247 21 62 chr4 120474782 120474879 -81853468 - L2 LINE L2 -1313 2001 1909 242 239 0 42 chr4 120474980 120475051 -81853296 + CT-rich Low_complexity Low_complexity 6 73 0 2033 118 0 21 chr4 120475435 120475755 -81852592 - AluSx SINE Alu 0 315 2 1032 304 114 20 chr4 120476173 120476613 -81851734 + MLT1K LTR MaLR 104 584 -4 2222 75 46 0 chr4 120476701 120476982 -81851365 - AluSg SINE Alu -16 294 1 242 224 0 119 chr4 120476983 120477050 -81851297 - L2 LINE L2 -11 3302 3244 398 226 171 30 chr4 120477076 120477240 -81851107 - MER20 DNA MER1_type -6 213 27 504 253 68 29 chr4 120477590 120477883 -81850464 + L1MC5 LINE L1 7476 7823 -219 403 211 167 0 chr4 120477914 120478028 -81850319 + MIR SINE MIR 96 228 -34 2469 67 7 0 chr4 120478030 120478327 -81850020 + AluSp SINE Alu 2 300 -13 2258 100 0 20 chr4 120478393 120478692 -81849655 + AluSq SINE Alu 1 293 -20 2179 93 0 7 chr4 120478792 120479083 -81849264 + AluSg1 SINE Alu 1 289 -20 2081 80 45 3 chr4 120479215 120479503 -81848844 + AluY SINE Alu 1 300 -11 2424 52 3 13 chr4 120479503 120479808 -81848539 + AluY SINE Alu 1 302 -9 546 204 19 9 chr4 120479808 120479916 -81848431 + AluJb SINE Alu 134 242 -70 2135 112 7 0 chr4 120480225 120480528 -81847819 + AluSx SINE Alu 1 305 -7 2280 104 0 0 chr4 120481387 120481695 -81846652 - AluY SINE Alu -2 309 2 2423 93 0 6 chr4 120481928 120482239 -81846108 + AluSg SINE Alu 1 309 -1 1346 20 0 0 chr4 120482342 120482536 -81845811 + L1PA4 LINE L1 6005 6198 0 2402 73 0 3 chr4 120482548 120482849 -81845498 + AluY SINE Alu 1 300 -11 435 325 0 0 chr4 120482997 120483114 -81845233 + MIR3 SINE MIR 85 201 -7 1759 149 7 43 chr4 120483590 120483891 -81844456 + AluJo SINE Alu 1 290 -22 2248 98 0 13 chr4 120484321 120484626 -81843721 + AluSx SINE Alu 2 302 -10 21 36 0 0 chr4 120484708 120484736 -81843611 + AT_rich Low_complexity Low_complexity 1 28 0 1679 89 41 99 chr4 120484835 120485149 -81843198 + AluSp SINE Alu 1 296 -17 499 240 10 0 chr4 120486013 120486113 -81842234 - MER5A DNA MER1_type -80 109 9 382 348 7 13 chr4 120486486 120486641 -81841706 - MIR SINE MIR -6 256 103 2045 72 0 0 chr4 120488401 120488651 -81839696 - AluSg SINE Alu -11 299 50 204 308 0 13 chr4 120488708 120488786 -81839561 + MIR3 SINE MIR 93 169 -39 282 29 0 0 chr4 120490009 120490044 -81838303 + (GA)n Simple_repeat Simple_repeat 2 36 0 578 279 87 5 chr4 120490133 120490352 -81837995 + MIR SINE MIR 24 260 -2 571 188 62 9 chr4 120490959 120491071 -81837276 + FLAM_A SINE Alu 10 127 -15 24 0 0 0 chr4 120491513 120491537 -81836810 + AT_rich Low_complexity Low_complexity 1 24 0 2663 26 0 3 chr4 120491690 120491998 -81836349 - AluY SINE Alu -4 307 1 2143 117 7 0 chr4 120492486 120492784 -81835563 - AluSx SINE Alu -12 300 1 2654 48 0 0 chr4 120492925 120493236 -81835111 + AluY SINE Alu 1 311 0 4175 167 24 16 chr4 120495579 120496392 -81831955 - L1MB7 LINE L1 -19 6165 5343 1808 200 22 44 chr4 120496392 120496797 -81831550 - MSTD LTR MaLR 0 396 1 4175 167 24 16 chr4 120496797 120496852 -81831495 - L1MB7 LINE L1 -841 5343 5290 518 115 44 26 chr4 120496880 120496993 -81831354 - L1MA9 LINE L1 -13 6299 6185 7481 221 35 42 chr4 120496996 120497129 -81831218 - L1MB7 LINE L1 -817 5329 5197 1888 164 3 26 chr4 120497129 120497441 -81830906 - AluJo SINE Alu -5 307 3 213 39 0 0 chr4 120497447 120497473 -81830874 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1740 168 0 18 chr4 120497473 120497758 -81830589 - AluJb SINE Alu -32 280 1 7481 221 35 42 chr4 120497758 120497865 -81830482 - L1MB7 LINE L1 -953 5193 5087 1624 187 28 0 chr4 120497865 120498149 -81830198 - AluSx SINE Alu -19 293 2 206 0 69 0 chr4 120498159 120498188 -81830159 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2057 115 18 0 chr4 120498190 120498469 -81829878 - AluSx SINE Alu -28 284 1 7481 221 35 42 chr4 120498469 120499364 -81828983 - L1MB7 LINE L1 -1069 5077 4177 2038 128 3 7 chr4 120499364 120499662 -81828685 - AluSx SINE Alu -15 297 1 7481 221 35 42 chr4 120499662 120500202 -81828145 - L1MB7 LINE L1 -1969 4177 3635 1836 165 0 13 chr4 120500202 120500505 -81827842 - AluJo SINE Alu -13 299 1 7481 221 35 42 chr4 120500505 120500516 -81827831 - L1MB7 LINE L1 -2511 3635 3625 2393 85 3 0 chr4 120500516 120500810 -81827537 - AluSp SINE Alu -16 297 3 7481 221 35 42 chr4 120500810 120501702 -81826645 - L1MB7 LINE L1 -2521 3625 2829 2443 60 6 25 chr4 120501702 120502017 -81826330 - AluY SINE Alu -2 309 1 7481 221 35 42 chr4 120502017 120502148 -81826199 - L1MB7 LINE L1 -3317 2829 2699 407 209 0 0 chr4 120502160 120502251 -81826096 + Charlie1 DNA MER1_type 2610 2700 -61 951 85 0 0 chr4 120502251 120502381 -81825966 - AluSg/x SINE Alu -6 306 177 1211 62 7 0 chr4 120502482 120502627 -81825720 - AluY SINE Alu -165 146 1 728 155 14 78 chr4 120502903 120503011 -81825336 + FLAM_A SINE Alu 1 99 -203 1874 81 3 56 chr4 120503011 120503296 -81825051 - AluY SINE Alu -41 270 1 728 155 14 78 chr4 120503296 120503329 -81825018 + FLAM_A SINE Alu 99 133 -169 1683 70 0 52 chr4 120503335 120503564 -81824783 + AluSc SINE Alu 82 298 -11 180 0 0 0 chr4 120504958 120504978 -81823369 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 387 241 45 68 chr4 120506139 120506272 -81822075 + MIR SINE MIR 48 177 -85 518 308 126 55 chr4 120507665 120508350 -81819997 + L2 LINE L2 1265 1997 -1317 239 300 0 29 chr4 120508393 120508463 -81819884 + L2 LINE L2 2254 2321 -993 22 56 0 0 chr4 120508485 120508521 -81819826 + AT_rich Low_complexity Low_complexity 1 36 0 2076 145 0 0 chr4 120508559 120508869 -81819478 + AluJb SINE Alu 1 310 -2 353 367 75 5 chr4 120510538 120510726 -81817621 - MIR SINE MIR -4 258 58 194 288 27 41 chr4 120511096 120511169 -81817178 + MER5A DNA MER1_type 19 90 -99 793 212 36 6 chr4 120511268 120511433 -81816914 + MER5A DNA MER1_type 17 186 -3 2352 93 3 13 chr4 120512626 120512937 -81815410 - AluSg SINE Alu 0 310 3 326 353 128 9 chr4 120513446 120513664 -81814683 - MIR SINE MIR 0 262 19 289 241 19 65 chr4 120513924 120514032 -81814315 - L1PB4 LINE L1 -97 6058 5955 451 216 67 90 chr4 120514236 120514491 -81813856 + L1MC5 LINE L1 7665 7913 -48 207 0 0 0 chr4 120514593 120514616 -81813731 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 236 373 73 0 chr4 120514636 120514746 -81813601 - L2 LINE L2 -47 3225 3108 21 36 0 0 chr4 120515143 120515171 -81813176 + AT_rich Low_complexity Low_complexity 1 28 0 1930 196 64 31 chr4 120515922 120516467 -81811880 + L1MC3 LINE L1 7215 7777 -8 312 224 0 30 chr4 120516916 120516983 -81811364 - MIR3 SINE MIR -21 187 123 2206 91 0 57 chr4 120520199 120520517 -81807830 + AluSc SINE Alu 1 300 -9 1883 153 6 16 chr4 120520541 120520854 -81807493 + AluSx SINE Alu 1 310 -2 471 35 0 0 chr4 120522213 120522270 -81806077 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 1522 167 0 73 chr4 120522274 120522574 -81805773 - AluJo SINE Alu -30 282 5 2247 96 10 0 chr4 120522585 120522878 -81805469 - AluSx SINE Alu -16 296 1 2892 80 3 0 chr4 120523035 120523424 -81804923 + L1PA5 LINE L1 5762 6151 -3 1474 216 56 50 chr4 120523652 120524170 -81804177 - MER39 LTR ERV1 0 707 1 3395 200 20 30 chr4 120525789 120526309 -81802038 + L1PA15 LINE L1 4483 4992 -1154 2295 97 0 3 chr4 120526309 120526609 -81801738 - AluSg1 SINE Alu -10 299 1 3395 200 20 30 chr4 120526609 120526948 -81801399 + L1PA15 LINE L1 4992 5333 -813 1879 143 14 11 chr4 120526948 120527234 -81801113 + AluSx SINE Alu 1 287 -25 270 81 0 0 chr4 120527235 120527272 -81801075 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 628 203 146 0 chr4 120527276 120527434 -81800913 - L1 LINE L1 -3529 2617 2437 812 144 15 8 chr4 120527450 120527582 -81800765 + FLAM_C SINE Alu 1 133 0 4653 118 17 18 chr4 120527591 120527751 -81800596 + L1PA15 LINE L1 5324 5483 -682 2222 109 3 13 chr4 120527751 120528064 -81800283 + AluY SINE Alu 2 311 0 4653 118 17 18 chr4 120528064 120528683 -81799664 + L1PA15 LINE L1 5483 6102 -63 5182 110 35 38 chr4 120528702 120530144 -81798203 + pTR5 LTR ERV1 738 2606 0 1615 182 0 4 chr4 120530149 120530424 -81797923 - AluSx SINE Alu -38 274 1 404 132 0 0 chr4 120530432 120530500 -81797847 + L1PA15 LINE L1 6097 6164 -1 2419 51 0 0 chr4 120531580 120531874 -81796473 - AluY SINE Alu -17 294 1 353 252 68 0 chr4 120532060 120532163 -81796184 - L1MC4a LINE L1 -1884 5924 5815 517 209 103 55 chr4 120532273 120532565 -81795782 + L1MC5 LINE L1 7622 7927 -34 679 254 117 55 chr4 120532570 120533187 -81795160 - L1MC5 LINE L1 -136 7825 7265 360 243 38 34 chr4 120533195 120533373 -81794974 - L1MC4 LINE L1 -728 7233 7071 340 266 78 8 chr4 120533707 120533835 -81794512 + MIR SINE MIR 112 248 -14 1885 111 111 18 chr4 120534124 120534465 -81793882 + THE1C LTR MaLR 1 373 -2 9261 167 19 7 chr4 120534467 120536098 -81792249 + THE1C-int LTR MaLR 1 1651 0 2085 108 66 30 chr4 120536098 120536460 -81791887 + THE1C LTR MaLR 1 375 0 2089 87 4 4 chr4 120536658 120536923 -81791424 + AluSx SINE Alu 1 265 -47 375 314 0 20 chr4 120538075 120538177 -81790170 - L2 LINE L2 -4 3268 3169 256 185 169 0 chr4 120538264 120538329 -81790018 + MER5A DNA MER1_type 93 168 -21 778 234 119 14 chr4 120538724 120538942 -81789405 - MIR SINE MIR 0 262 22 26 30 0 0 chr4 120539950 120539983 -81788364 + AT_rich Low_complexity Low_complexity 1 33 0 2338 97 3 7 chr4 120540071 120540380 -81787967 - AluSx SINE Alu -4 308 1 1975 132 61 31 chr4 120540509 120540836 -81787511 - MER1B DNA MER1_type 0 337 1 2044 195 115 9 chr4 120540855 120541306 -81787041 - MLT1D LTR MaLR 0 505 7 2955 94 2 5 chr4 120641809 120642212 -81686135 + L1PB2 LINE L1 5746 6147 -4 210 313 37 104 chr4 120642327 120642531 -81685816 - MIR SINE MIR -74 188 4 295 366 0 0 chr4 120642640 120642741 -81685606 - L3 LINE CR1 -857 720 620 467 186 35 0 chr4 120643129 120643215 -81685132 + MER44D DNA MER2_type 517 605 0 290 341 22 0 chr4 120643274 120643365 -81684982 + L2 LINE L2 3221 3313 0 24 53 0 0 chr4 120643976 120644014 -81684333 + AT_rich Low_complexity Low_complexity 1 38 0 293 306 64 0 chr4 120644277 120644434 -81683913 - L1ME LINE L1 -422 5699 5533 342 61 0 0 chr4 120644968 120645017 -81683330 + (GGAA)n Simple_repeat Simple_repeat 3 51 0 207 0 0 0 chr4 120645262 120645285 -81683062 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1214 21 0 0 chr4 120645288 120645429 -81682918 - L1PA3 LINE L1 -5 6150 6010 3669 24 0 0 chr4 120645429 120645849 -81682498 + L1PA3 LINE L1 5600 6019 -136 230 337 61 46 chr4 120646045 120646241 -81682106 + L2 LINE L2 2814 3012 -260 345 255 66 9 chr4 120646798 120646904 -81681443 - L1ME4a LINE L1 -278 5843 5732 2322 85 3 7 chr4 120647037 120647342 -81681005 - AluSg1 SINE Alu 0 309 6 2127 80 7 24 chr4 120648152 120648440 -81679907 - AluSg1 SINE Alu -24 285 3 2112 122 0 3 chr4 120648549 120648844 -81679503 - AluSx SINE Alu -18 294 1 5882 97 36 2 chr4 120649444 120650640 -81677707 - L1PA16 LINE L1 -9 6157 4941 581 180 36 0 chr4 120650705 120650816 -81677531 + L1ME LINE L1 5520 5634 -530 2414 74 3 0 chr4 120650944 120651243 -81677104 - AluY SINE Alu -11 300 1 219 114 0 0 chr4 120652243 120652278 -81676069 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 203 265 0 20 chr4 120652279 120652328 -81676019 - MER5B DNA MER1_type -130 48 1 702 227 41 69 chr4 120652588 120652949 -81675398 + LTR37B LTR ERV1 11 314 -154 2007 121 66 33 chr4 120652949 120653312 -81675035 - THE1C LTR MaLR 0 375 1 702 227 41 69 chr4 120653312 120653463 -81674884 + LTR37B LTR ERV1 314 468 0 311 351 22 30 chr4 120653501 120653635 -81674712 + L2 LINE L2 363 495 -2819 1854 166 3 69 chr4 120654575 120654954 -81673393 + MLT1B LTR MaLR 1 354 -36 815 109 0 0 chr4 120654961 120655071 -81673276 - AluSg/x SINE Alu -15 295 186 2240 104 13 0 chr4 120655444 120655743 -81672604 - AluSq SINE Alu -10 303 1 868 233 65 121 chr4 120656304 120656875 -81671472 + MER34 LTR ERV1 1 539 -3 302 323 54 24 chr4 120657315 120657482 -81670865 + MIR SINE MIR 36 207 -55 21 0 0 0 chr4 120657735 120657756 -81670591 + AT_rich Low_complexity Low_complexity 1 21 0 582 265 19 0 chr4 120657981 120658143 -81670204 - MER103 DNA DNA -1 165 1 375 221 0 29 chr4 120658905 120659041 -81669306 + (TATATG)n Simple_repeat Simple_repeat 4 135 0 245 197 91 0 chr4 120659041 120659107 -81669240 + L1MA8 LINE L1 6217 6288 -3 1427 110 13 13 chr4 120659443 120659679 -81668668 + L1MA8 LINE L1 6053 6288 -3 2222 87 45 42 chr4 120659836 120660191 -81668156 + L1MA1 LINE L1 5947 6302 0 906 204 113 44 chr4 120660367 120660685 -81667662 - L1ME1 LINE L1 -4 6162 5823 365 311 9 19 chr4 120661802 120661908 -81666439 - MER5A DNA MER1_type -36 153 49 3374 139 82 2 chr4 120661910 120662505 -81665842 + L1PA16 LINE L1 5522 6164 -2 530 220 5 120 chr4 120662579 120662779 -81665568 + MER5B DNA MER1_type 2 178 0 245 250 34 80 chr4 120663683 120663771 -81664576 + MIR SINE MIR 105 188 -74 26 0 0 0 chr4 120664515 120664541 -81663806 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 120665125 120665147 -81663200 + AT_rich Low_complexity Low_complexity 1 22 0 538 138 0 98 chr4 120665338 120665438 -81662909 + L1PB4 LINE L1 6029 6116 -40 2261 95 0 3 chr4 120665438 120665742 -81662605 + AluSq SINE Alu 1 303 -10 538 138 0 98 chr4 120665742 120665764 -81662583 + L1PB4 LINE L1 6116 6139 -17 243 0 0 0 chr4 120665937 120665964 -81662383 + (TCTCCC)n Simple_repeat Simple_repeat 1 27 0 253 322 217 0 chr4 120666629 120666772 -81661575 - MIR SINE MIR -13 249 76 2079 126 7 0 chr4 120668224 120668518 -81659829 - AluSx SINE Alu -16 296 1 208 278 42 76 chr4 120668518 120668662 -81659685 + MIR SINE MIR 78 216 -46 192 367 47 23 chr4 120668885 120669013 -81659334 + L2 LINE L2 3133 3263 -9 35 0 0 0 chr4 120669556 120669591 -81658756 + AT_rich Low_complexity Low_complexity 1 35 0 2546 69 3 0 chr4 120669591 120669925 -81658422 - L1PA8 LINE L1 -1 6171 5837 2212 108 3 3 chr4 120669987 120670284 -81658063 + AluSx SINE Alu 1 297 -15 2011 182 84 0 chr4 120670352 120670770 -81657577 - L1MB3 LINE L1 0 6183 5731 338 325 68 0 chr4 120670915 120671032 -81657315 + MIR SINE MIR 33 157 -105 3695 161 15 28 chr4 120671038 120671686 -81656661 - MER52A LTR ERV1 0 1755 1116 1224 123 0 15 chr4 120671940 120672135 -81656212 - L1MA2 LINE L1 0 6304 6113 5203 133 25 21 chr4 120672135 120672409 -81655938 - L1MA3 LINE L1 -260 6045 5774 2549 61 3 0 chr4 120672409 120672719 -81655628 - AluY SINE Alu 0 311 1 5203 133 25 21 chr4 120672719 120673663 -81654684 - L1MA3 LINE L1 -531 5774 4810 32 0 0 0 chr4 120673779 120673811 -81654536 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr4 120674175 120674204 -81654143 + AT_rich Low_complexity Low_complexity 1 29 0 326 304 105 22 chr4 120674254 120674435 -81653912 - L1ME4a LINE L1 -110 6011 5816 322 309 57 8 chr4 120675121 120675257 -81653090 - MIR3 SINE MIR -24 184 44 358 335 76 43 chr4 120676861 120677046 -81651301 - MIR SINE MIR -36 226 36 408 269 29 0 chr4 120677546 120677650 -81650697 - L3b LINE CR1 -199 1384 1278 2081 94 49 7 chr4 120677832 120678119 -81650228 - AluSg SINE Alu -10 300 2 222 37 0 0 chr4 120678191 120678218 -81650129 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 1701 130 0 4 chr4 120678218 120678456 -81649891 - AluSg SINE Alu -25 285 49 1667 116 20 14 chr4 120678547 120678839 -81649508 + L1MA8 LINE L1 5993 6286 -5 564 165 114 84 chr4 120678908 120679181 -81649166 - LTR37B LTR ERV1 -2 466 186 24 0 0 0 chr4 120680021 120680045 -81648302 + AT_rich Low_complexity Low_complexity 1 24 0 1477 97 0 0 chr4 120680148 120680333 -81648014 + AluSg/x SINE Alu 111 295 -17 2455 193 81 77 chr4 120680333 120681023 -81647324 + MLT1-int LTR MaLR 50 742 -629 329 203 0 0 chr4 120681040 120681104 -81647243 + MLT1B LTR MaLR 320 383 -7 2076 95 46 3 chr4 120681227 120681512 -81646835 - AluSc SINE Alu -12 297 1 488 153 92 0 chr4 120681599 120681697 -81646650 - MLT2C1 LTR ERVL -290 107 1 1720 179 7 0 chr4 120682211 120682491 -81645856 - AluJo SINE Alu -28 284 3 28 0 0 0 chr4 120682501 120682529 -81645818 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr4 120683236 120683281 -81645066 + AT_rich Low_complexity Low_complexity 1 45 0 229 274 39 0 chr4 120683284 120683360 -81644987 + MIR SINE MIR 95 178 -30 303 56 0 0 chr4 120683363 120683399 -81644948 + U2 snRNA snRNA 1 36 -152 287 262 155 0 chr4 120684205 120684308 -81644039 + L2 LINE L2 3187 3305 -8 1195 78 198 0 chr4 120685349 120685541 -81642806 - MER30 DNA MER1_type 0 230 1 230 0 33 0 chr4 120686006 120686036 -81642311 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 189 169 22 11 chr4 120686395 120686484 -81641863 + (TA)n Simple_repeat Simple_repeat 1 90 0 1450 60 0 0 chr4 120686490 120686672 -81641675 - L1PB1 LINE L1 -1 6150 5969 2187 103 66 29 chr4 120687890 120688240 -81640107 + THE1B LTR MaLR 1 363 -1 2221 78 24 17 chr4 120688793 120689087 -81639260 - AluSp SINE Alu -17 296 1 183 80 0 0 chr4 120690253 120690278 -81638069 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 231 318 85 31 chr4 120691421 120691550 -81636797 + MIR3 SINE MIR 2 137 -71 523 284 142 6 chr4 120693039 120693215 -81635132 + MIR SINE MIR 32 231 -31 431 238 38 0 chr4 120693300 120693405 -81634942 + MIR SINE MIR 90 198 -64 1355 227 75 24 chr4 120693775 120694150 -81634197 - MER63D DNA MER1_type 0 1061 668 848 208 37 57 chr4 120694172 120694553 -81633794 - MER63D DNA MER1_type -626 435 1 375 301 49 46 chr4 120694852 120695106 -81633241 - L1ME4a LINE L1 -253 5868 5611 2823 7 0 0 chr4 120695106 120695412 -81632935 - AluYa5 SINE Alu -5 306 1 375 301 49 46 chr4 120695412 120695486 -81632861 - L1ME4a LINE L1 -510 5611 5539 2454 87 0 0 chr4 120695541 120695850 -81632497 - AluY SINE Alu -2 309 1 384 217 125 33 chr4 120695938 120696058 -81632289 - L2 LINE L2 -3 3310 3180 233 304 144 20 chr4 120696392 120696642 -81631705 - L1ME4a LINE L1 -981 5165 4885 227 330 57 9 chr4 120698495 120698601 -81629746 - MIR SINE MIR -82 126 16 21 36 0 0 chr4 120698686 120698714 -81629633 + AT_rich Low_complexity Low_complexity 1 28 0 442 303 66 0 chr4 120699360 120699512 -81628835 + MIR SINE MIR 68 229 -33 448 295 13 7 chr4 120700305 120700454 -81627893 + MIR SINE MIR 3 152 -110 1104 260 56 7 chr4 120700933 120701221 -81627126 + MLT1I LTR MaLR 108 409 0 199 326 0 0 chr4 120702653 120702702 -81625645 - MIR SINE MIR -144 64 16 261 268 0 0 chr4 120702845 120702901 -81625446 + GA-rich Low_complexity Low_complexity 2 57 0 308 186 330 0 chr4 120703666 120703763 -81624584 + MIR SINE MIR 23 151 -111 282 319 72 12 chr4 120703840 120704006 -81624341 - L2 LINE L2 -1 3312 3137 472 182 61 74 chr4 120704197 120704345 -81624002 - MIR SINE MIR -6 256 111 381 193 6 21 chr4 120704446 120704779 -81623568 + (TA)n Simple_repeat Simple_repeat 1 327 0 244 162 36 9 chr4 120704832 120704943 -81623404 + (TA)n Simple_repeat Simple_repeat 2 115 0 21 57 0 0 chr4 120706145 120706180 -81622167 + AT_rich Low_complexity Low_complexity 1 35 0 2283 98 0 16 chr4 120706599 120706917 -81621430 + AluSq SINE Alu 1 313 0 558 233 10 0 chr4 120707270 120707373 -81620974 - L2 LINE L2 -19 3294 3191 295 261 44 111 chr4 120707845 120708071 -81620276 + MIR SINE MIR 1 211 -51 680 234 53 23 chr4 120708188 120708359 -81619988 - MIR SINE MIR -22 240 65 2289 88 0 0 chr4 120708586 120708882 -81619465 + AluSx SINE Alu 1 296 -16 265 236 0 0 chr4 120708886 120708941 -81619406 + MIR SINE MIR 206 260 -2 1632 169 0 4 chr4 120709356 120709643 -81618704 - AluJb SINE Alu 0 315 30 1312 306 32 22 chr4 120709962 120710085 -81618262 + L2 LINE L2 2699 2819 -494 234 0 0 0 chr4 120710085 120710111 -81618236 + (CA)n Simple_repeat Simple_repeat 2 27 0 1312 306 32 22 chr4 120710111 120710580 -81617767 + L2 LINE L2 2819 3297 -16 615 335 66 49 chr4 120710849 120711318 -81617029 - L3 LINE CR1 -4 1573 1097 2272 97 3 0 chr4 120711433 120711731 -81616616 + AluSp SINE Alu 2 300 -13 205 349 0 23 chr4 120711751 120711837 -81616510 - MIR SINE MIR -98 164 81 556 248 68 45 chr4 120711884 120712239 -81616108 - L1MC5 LINE L1 -35 7926 7564 2379 92 0 0 chr4 120712719 120713022 -81615325 - AluSx SINE Alu -9 303 1 756 83 0 0 chr4 120713025 120713121 -81615226 - AluY SINE Alu -179 132 37 1424 142 9 9 chr4 120713577 120713803 -81614544 + AluSg/x SINE Alu 85 310 -2 2324 90 0 3 chr4 120714325 120714624 -81613723 - AluSg SINE Alu -11 299 2 1946 133 0 17 chr4 120714759 120715060 -81613287 - AluJb SINE Alu -6 306 11 24 0 0 0 chr4 120716469 120716493 -81611854 + AT_rich Low_complexity Low_complexity 1 24 0 188 283 50 82 chr4 120717210 120717528 -81610819 + L2 LINE L2 1732 2039 -1275 649 254 157 12 chr4 120717861 120718216 -81610131 + Charlie8 DNA MER1_type 17 411 -2006 187 342 45 27 chr4 120719007 120719118 -81609229 - L2 LINE L2 -583 2731 2619 262 213 0 0 chr4 120720219 120720266 -81608081 + L2 LINE L2 3197 3243 -70 840 302 71 36 chr4 120720413 120720906 -81607441 - L2 LINE L2 0 3313 2804 952 118 14 0 chr4 120721098 120721242 -81607105 - L1PA10 LINE L1 -4 6164 6019 272 152 0 0 chr4 120722614 120722660 -81605687 + MER39 LTR ERV1 1 46 -661 304 203 0 29 chr4 120722664 120722733 -81605614 + L1MC4 LINE L1 6636 6702 -1340 213 211 0 0 chr4 120722733 120722771 -81605576 + (CATA)n Simple_repeat Simple_repeat 2 39 0 2238 108 7 0 chr4 120723397 120723692 -81604655 - AluSx SINE Alu -15 297 1 1416 197 3 40 chr4 120723743 120724047 -81604300 + AluJo SINE Alu 1 293 -19 26 0 0 0 chr4 120726857 120726883 -81601464 + AT_rich Low_complexity Low_complexity 1 26 0 825 218 0 35 chr4 120728049 120728223 -81600124 + FRAM SINE Alu 1 168 -8 300 215 116 58 chr4 120728905 120729026 -81599321 - MIR SINE MIR -70 192 65 2722 29 0 0 chr4 120729080 120729389 -81598958 + AluY SINE Alu 1 309 -2 222 293 53 0 chr4 120729455 120729530 -81598817 - MIR SINE MIR -13 249 171 789 206 28 129 chr4 120729684 120729970 -81598377 + MIR SINE MIR 3 259 -3 22 56 0 0 chr4 120730799 120730835 -81597512 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr4 120732192 120732212 -81596135 + (TTG)n Simple_repeat Simple_repeat 1 20 0 27 0 0 0 chr4 120732308 120732335 -81596012 + AT_rich Low_complexity Low_complexity 1 27 0 337 285 48 72 chr4 120732353 120732391 -81595956 + L1ME LINE L1 5600 5637 -484 3109 154 15 7 chr4 120732391 120732929 -81595418 + MER34 LTR ERV1 1 542 0 337 285 48 72 chr4 120732929 120733097 -81595250 + L1ME LINE L1 5637 5801 -320 653 250 68 91 chr4 120733097 120733437 -81594910 + MER46C DNA MER2_type 1 332 -6 709 268 49 45 chr4 120733544 120733809 -81594538 + L2 LINE L2 3048 3313 0 255 31 0 0 chr4 120734280 120734312 -81594035 + (TG)n Simple_repeat Simple_repeat 2 33 0 182 202 36 143 chr4 120736324 120736408 -81591939 - L3 LINE CR1 -583 994 920 22 0 0 0 chr4 120737492 120737514 -81590833 + AT_rich Low_complexity Low_complexity 1 22 0 910 315 49 35 chr4 120737543 120737931 -81590416 - L1MC/D LINE L1 -486 5635 5274 3750 157 20 11 chr4 120737931 120738132 -81590215 - L1MA4A LINE L1 -7 6296 6098 2389 168 21 12 chr4 120738132 120738554 -81589793 - MSTB LTR MaLR 0 426 1 3750 157 20 11 chr4 120738554 120739057 -81589290 - L1MA4A LINE L1 -205 6098 5586 910 315 49 35 chr4 120739057 120739287 -81589060 - L1MC/D LINE L1 -847 5274 5049 5197 148 56 15 chr4 120739300 120740146 -81588201 + Tigger3b DNA MER2_type 1 891 -2137 191 88 29 0 chr4 120740146 120740180 -81588167 + (CTCA)n Simple_repeat Simple_repeat 4 38 0 5197 148 56 15 chr4 120740180 120740273 -81588074 + Tigger3b DNA MER2_type 891 979 -252 644 295 174 59 chr4 120740947 120741320 -81587027 - L2 LINE L2 0 3313 2898 1704 170 21 50 chr4 120741680 120742056 -81586291 - MLT1A1 LTR MaLR 0 365 1 346 325 155 15 chr4 120742298 120742504 -81585843 + L2 LINE L2 3030 3264 -8 388 272 48 10 chr4 120742747 120742850 -81585497 + L2 LINE L2 3191 3297 -16 259 328 92 8 chr4 120742865 120742984 -81585363 - MIR SINE MIR -78 184 56 277 246 46 0 chr4 120743482 120743547 -81584800 + MLT1J2 LTR MaLR 3 70 -380 1643 201 25 14 chr4 120743547 120743950 -81584397 + MLT1C LTR MaLR 1 467 0 612 284 132 29 chr4 120743952 120744293 -81584054 + MLT1J1 LTR MaLR 67 442 -4 731 165 0 9 chr4 120744860 120744975 -81583372 + FLAM_C SINE Alu 3 116 -17 500 394 24 62 chr4 120745334 120745750 -81582597 - L2 LINE L2 -1 3271 2872 1624 209 11 45 chr4 120745863 120745945 -81582402 + MLT1A1 LTR MaLR 13 96 -269 2992 148 9 36 chr4 120745945 120746472 -81581875 - MLT2B2 LTR ERVL 0 515 3 1624 209 11 45 chr4 120746472 120746743 -81581604 + MLT1A1 LTR MaLR 96 354 -11 195 337 82 43 chr4 120747120 120747375 -81580972 - L2 LINE L2 -459 2855 2591 289 319 38 19 chr4 120747500 120747660 -81580687 - MIR3 SINE MIR -10 198 36 198 0 0 0 chr4 120747928 120747950 -81580397 + (CAG)n Simple_repeat Simple_repeat 2 23 0 331 385 30 12 chr4 120748616 120748785 -81579562 - MIR3 SINE MIR -12 196 25 606 239 195 63 chr4 120749377 120749901 -81578446 - MLT1G1 LTR MaLR -2 593 1 2068 229 79 12 chr4 120751254 120751735 -81576612 - LTR40a LTR ERVL -6 513 1 240 432 0 0 chr4 120751954 120752065 -81576282 + MIR SINE MIR 25 135 -73 238 346 50 0 chr4 120753793 120753894 -81574453 - L2 LINE L2 -4 3268 3163 213 39 0 0 chr4 120754812 120754838 -81573509 + (CA)n Simple_repeat Simple_repeat 2 27 0 338 336 36 29 chr4 120755053 120755190 -81573157 + MIR3 SINE MIR 35 172 -36 25 31 0 0 chr4 120757144 120757176 -81571171 + AT_rich Low_complexity Low_complexity 1 32 0 29 28 0 0 chr4 120757232 120757268 -81571079 + AT_rich Low_complexity Low_complexity 1 36 0 188 328 170 26 chr4 120757290 120757601 -81570746 - L3b LINE CR1 -10 1573 1218 1654 146 61 34 chr4 120758907 120759202 -81569145 + AluJo SINE Alu 7 309 -3 314 213 53 27 chr4 120759964 120760039 -81568308 + L2 LINE L2 3194 3270 -2 311 330 110 16 chr4 120760053 120760244 -81568103 + L2 LINE L2 2888 3096 -176 198 0 0 0 chr4 120760762 120760784 -81567563 + (A)n Simple_repeat Simple_repeat 1 22 0 1715 113 100 41 chr4 120760784 120761075 -81567272 - AluSg SINE Alu -2 308 1 217 299 0 15 chr4 120761338 120761405 -81566942 - L2 LINE L2 -8 3264 3199 414 0 0 0 chr4 120761420 120761466 -81566881 + (CA)n Simple_repeat Simple_repeat 2 47 0 212 233 0 0 chr4 120762334 120762377 -81565970 + (TG)n Simple_repeat Simple_repeat 2 44 0 273 260 27 0 chr4 120763662 120763735 -81564612 + GA-rich Low_complexity Low_complexity 2 76 0 368 289 96 60 chr4 120764192 120764410 -81563937 + MIR SINE MIR 37 262 0 2375 213 23 5 chr4 120765174 120765735 -81562612 - MER90 LTR ERV1 0 614 2 1530 163 21 25 chr4 120766098 120766380 -81561967 - AluJo SINE Alu -16 296 16 336 248 316 0 chr4 120767197 120767330 -81561017 + L3 LINE CR1 1400 1574 -3 427 247 133 36 chr4 120767441 120767607 -81560740 + MER5A DNA MER1_type 8 189 0 1300 175 33 33 chr4 120767611 120767885 -81560462 + AluJo SINE Alu 1 274 -38 357 82 0 0 chr4 120767889 120767938 -81560409 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 309 199 110 52 chr4 120768099 120768235 -81560112 - MIR SINE MIR -9 253 110 2116 180 0 5 chr4 120771347 120771714 -81556633 - MLT1A1 LTR MaLR 0 365 1 23 54 0 0 chr4 120772722 120772759 -81555588 + AT_rich Low_complexity Low_complexity 1 37 0 420 301 37 61 chr4 120772799 120773045 -81555302 - MIR SINE MIR 0 262 23 207 0 0 0 chr4 120773180 120773203 -81555144 + (T)n Simple_repeat Simple_repeat 1 23 0 1673 131 0 0 chr4 120774234 120774508 -81553839 + L1MA2 LINE L1 6031 6304 0 21 0 0 0 chr4 120777723 120777744 -81550603 + AT_rich Low_complexity Low_complexity 1 21 0 551 284 56 6 chr4 120777838 120778000 -81550347 - MIR3 SINE MIR -6 202 33 514 366 62 55 chr4 120778770 120779172 -81549175 - L2 LINE L2 0 3272 2868 * 747 226 85 42 chr4 120779151 120779363 -81548984 + MIR SINE MIR 21 241 -21 183 357 149 15 chr4 120779379 120779989 -81548358 - L2 LINE L2 -426 2888 2197 1855 152 23 13 chr4 120781182 120781491 -81546856 + AluJb SINE Alu 1 312 0 2524 98 13 24 chr4 120784158 120784537 -81543810 - THE1C LTR MaLR 0 375 1 216 0 0 0 chr4 120785146 120785170 -81543177 + (T)n Simple_repeat Simple_repeat 1 24 0 183 322 147 63 chr4 120785299 120785358 -81542989 + L2 LINE L2 3116 3169 -103 2169 116 20 0 chr4 120785358 120785659 -81542688 - AluSx SINE Alu -5 307 1 183 322 147 63 chr4 120785659 120785742 -81542605 + L2 LINE L2 3169 3270 -2 584 238 92 24 chr4 120786711 120786875 -81541472 - MER5B DNA MER1_type 0 178 4 483 200 220 60 chr4 120787400 120787550 -81540797 + MER5A DNA MER1_type 15 188 -1 478 281 64 23 chr4 120788306 120788477 -81539870 - MER5A DNA MER1_type -5 184 7 1410 123 50 0 chr4 120788507 120788726 -81539621 + MER30 DNA MER1_type 1 230 0 1887 152 0 10 chr4 120788940 120789229 -81539118 + AluJb SINE Alu 24 309 -3 335 91 36 0 chr4 120789388 120789443 -81538904 + GA-rich Low_complexity Low_complexity 3 59 0 495 273 64 5 chr4 120789443 120789663 -81538684 + L1ME4a LINE L1 5665 5897 -224 308 280 33 13 chr4 120789696 120789846 -81538501 + L1ME4a LINE L1 5969 6121 0 181 317 83 17 chr4 120789871 120789931 -81538416 + L3b LINE CR1 1483 1546 -37 593 253 88 22 chr4 120790964 120791146 -81537201 - MIR SINE MIR -56 206 13 195 341 62 68 chr4 120791334 120791510 -81536837 - MIR3 SINE MIR -7 201 27 195 355 99 0 chr4 120791872 120792013 -81536334 + L2 LINE L2 3158 3312 -1 1920 157 0 0 chr4 120792297 120792596 -81535751 - AluSx SINE Alu -13 299 1 22 56 0 0 chr4 120793395 120793431 -81534916 + AT_rich Low_complexity Low_complexity 1 36 0 227 263 32 53 chr4 120794098 120794193 -81534154 + L2 LINE L2 3219 3311 -2 2120 129 3 0 chr4 120794209 120794504 -81533843 - AluSq SINE Alu -15 298 3 721 190 15 0 chr4 120794699 120794836 -81533511 - BC200 scRNA scRNA -61 139 1 28 0 0 0 chr4 120795456 120795484 -81532863 + AT_rich Low_complexity Low_complexity 1 28 0 784 21 0 0 chr4 120795484 120795577 -81532770 - L1PA3 LINE L1 -3 6152 6060 1521 173 35 21 chr4 120795583 120795872 -81532475 - AluJo SINE Alu -19 293 1 26 0 0 0 chr4 120796159 120796185 -81532162 + AT_rich Low_complexity Low_complexity 1 26 0 569 276 56 94 chr4 120796272 120796664 -81531683 - MLT1J1 LTR MaLR -6 440 64 199 300 129 57 chr4 120797658 120797702 -81530645 + L3b LINE CR1 1120 1159 -424 2137 99 26 7 chr4 120797702 120798004 -81530343 - AluY SINE Alu -3 308 1 199 300 129 57 chr4 120798004 120798239 -81530108 + L3b LINE CR1 1159 1419 -164 21 0 0 0 chr4 120798526 120798547 -81529800 + AT_rich Low_complexity Low_complexity 1 21 0 1036 300 69 27 chr4 120798839 120799021 -81529326 - L2 LINE L2 0 3313 3140 207 100 0 0 chr4 120799021 120799051 -81529296 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 1036 300 69 27 chr4 120799051 120799348 -81528999 - L2 LINE L2 -173 3140 2814 428 359 86 43 chr4 120799362 120799780 -81528567 - L2 LINE L2 -32 3240 2805 26 30 0 0 chr4 120800081 120800114 -81528233 + AT_rich Low_complexity Low_complexity 1 33 0 270 143 0 0 chr4 120801172 120801214 -81527133 - MIR SINE MIR -67 141 100 292 203 31 0 chr4 120801333 120801397 -81526950 - MLT1J LTR MaLR 0 595 530 847 186 41 50 chr4 120801403 120801623 -81526724 - MLT1H LTR MaLR -259 290 73 2048 121 10 7 chr4 120801942 120802249 -81526098 + AluSp SINE Alu 1 308 -5 830 320 60 0 chr4 120803022 120803306 -81525041 + MER102a DNA MER1_type 25 325 -5 279 224 153 35 chr4 120804047 120804132 -81524215 - MIR SINE MIR -88 174 80 458 238 224 0 chr4 120804782 120804929 -81523418 + MER5A DNA MER1_type 10 189 0 189 337 79 11 chr4 120804929 120805017 -81523330 + MIR SINE MIR 37 130 -132 570 261 72 11 chr4 120805024 120805204 -81523143 + MIR SINE MIR 68 258 -4 215 277 202 21 chr4 120805357 120805451 -81522896 + MIR3 SINE MIR 6 116 -92 1780 134 81 3 chr4 120805753 120806037 -81522310 - AluSx SINE Alu -6 306 1 288 130 0 0 chr4 120806915 120806961 -81521386 + (TG)n Simple_repeat Simple_repeat 2 47 0 391 260 8 34 chr4 120806995 120807151 -81521196 - L1MA10 LINE L1 0 6334 6169 21 57 0 0 chr4 120808074 120808109 -81520238 + AT_rich Low_complexity Low_complexity 1 35 0 1219 273 51 31 chr4 120808702 120809094 -81519253 - MLT1J LTR MaLR -36 475 76 249 108 0 0 chr4 120809094 120809131 -81519216 + (TTA)n Simple_repeat Simple_repeat 2 38 0 8139 217 42 19 chr4 120810411 120813495 -81514852 + L1MC2 LINE L1 2996 6158 -186 198 91 0 0 chr4 120813881 120813914 -81514433 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 894 316 214 19 chr4 120813977 120815108 -81513239 - L2 LINE L2 -96 3217 1883 24 0 0 0 chr4 120815421 120815445 -81512902 + AT_rich Low_complexity Low_complexity 1 24 0 2027 140 0 3 chr4 120816775 120817061 -81511286 + AluSx SINE Alu 1 285 -27 279 54 0 0 chr4 120817065 120817102 -81511245 + (CAA)n Simple_repeat Simple_repeat 2 38 0 25 31 0 0 chr4 120818374 120818406 -81509941 + AT_rich Low_complexity Low_complexity 1 32 0 2197 122 0 0 chr4 120819565 120819860 -81508487 - AluSx SINE Alu -17 295 1 232 300 191 18 chr4 120820092 120820202 -81508145 - MIR SINE MIR -43 219 91 344 239 102 36 chr4 120822001 120822168 -81506179 - L1MEd LINE L1 -5932 187 10 2493 99 25 6 chr4 120822382 120822736 -81505611 - THE1B LTR MaLR -2 362 2 284 238 113 0 chr4 120824274 120824354 -81503993 + L2 LINE L2 3204 3292 -21 343 119 30 0 chr4 120828998 120829065 -81499282 + (CAG)n Simple_repeat Simple_repeat 1 69 0 27 0 0 0 chr4 120830319 120830346 -81498001 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr4 120832267 120832291 -81496056 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 26 chr4 120832920 120832938 -81495409 + AT_rich Low_complexity Low_complexity 1 18 -19 1776 111 8 0 chr4 120832938 120833199 -81495148 - L1PA12 LINE L1 -2 6166 5904 27 0 0 26 chr4 120833199 120833218 -81495129 + AT_rich Low_complexity Low_complexity 18 37 0 24 32 0 0 chr4 120833391 120833422 -81494925 + AT_rich Low_complexity Low_complexity 1 31 0 495 263 200 16 chr4 120833458 120833648 -81494699 - MIR SINE MIR -12 250 26 40 0 0 0 chr4 120835241 120835281 -81493066 + AT_rich Low_complexity Low_complexity 1 40 0 241 231 68 120 chr4 120836002 120836119 -81492228 + MER5B DNA MER1_type 67 177 -1 693 154 0 31 chr4 120837188 120837318 -81491029 + FLAM_C SINE Alu 1 126 -7 219 269 285 15 chr4 120837866 120837996 -81490351 + MIR3 SINE MIR 40 204 -4 454 143 0 0 chr4 120839810 120839887 -81488460 - L1MA1 LINE L1 -6 6296 6220 248 352 56 0 chr4 120840099 120840207 -81488140 - L2 LINE L2 -627 2687 2574 304 261 123 113 chr4 120840503 120840706 -81487641 + MIR SINE MIR 9 213 -49 2192 93 0 3 chr4 120840830 120841120 -81487227 - AluSg SINE Alu -12 298 10 1205 229 219 30 chr4 120841120 120841595 -81486752 + L1MC4 LINE L1 6598 7162 -880 223 235 15 15 chr4 120844547 120844615 -81483732 + (TA)n Simple_repeat Simple_repeat 2 69 0 208 329 68 68 chr4 120845672 120845894 -81482453 - MIR SINE MIR -38 224 3 456 336 0 0 chr4 120846033 120846161 -81482186 - MIR SINE MIR -27 235 108 216 0 0 0 chr4 120846620 120846644 -81481703 + (T)n Simple_repeat Simple_repeat 1 24 0 252 77 0 0 chr4 120847848 120847887 -81480460 + (TG)n Simple_repeat Simple_repeat 2 40 0 228 347 63 0 chr4 120848445 120848540 -81479807 - L2 LINE L2 -2 3270 3170 1696 149 80 3 chr4 120848753 120849041 -81479306 + AluJb SINE Alu 2 311 -1 2038 105 8 4 chr4 120849221 120849487 -81478860 - AluSx SINE Alu -25 287 21 703 94 0 0 chr4 120849487 120849583 -81478764 - AluS SINE Alu -216 96 1 428 311 203 22 chr4 120849629 120849950 -81478397 - L2 LINE L2 -596 2718 2340 191 65 87 0 chr4 120850074 120850120 -81478227 + CT-rich Low_complexity Low_complexity 3 52 0 189 244 22 0 chr4 120852143 120852188 -81476159 - L2 LINE L2 -6 3307 3262 2150 119 3 0 chr4 120853146 120853439 -81474908 + AluSq SINE Alu 1 294 -19 309 257 28 112 chr4 120853896 120854075 -81474272 - MIR3 SINE MIR -3 205 42 29 0 0 0 chr4 120856852 120856881 -81471466 + AT_rich Low_complexity Low_complexity 1 29 0 44 20 0 0 chr4 120857158 120857209 -81471138 + AT_rich Low_complexity Low_complexity 1 51 0 242 123 18 0 chr4 120857236 120857293 -81471054 + (TA)n Simple_repeat Simple_repeat 1 58 0 40 37 0 0 chr4 120859006 120859060 -81469287 + AT_rich Low_complexity Low_complexity 1 54 0 202 306 212 0 chr4 120861082 120861167 -81467180 - L2 LINE L2 -6 3266 3164 305 292 32 173 chr4 120861218 120861687 -81466660 - L2 LINE L2 -382 2932 2530 1955 154 6 6 chr4 120862042 120862354 -81465993 + AluJb SINE Alu 1 312 0 205 274 0 0 chr4 120863415 120863466 -81464881 + L2 LINE L2 3263 3313 0 2003 174 88 29 chr4 120863695 120864103 -81464244 - MSTB1 LTR MaLR 0 432 1 1963 145 10 10 chr4 120864233 120864544 -81463803 + AluJb SINE Alu 1 311 -1 1306 225 23 0 chr4 120865097 120865359 -81462988 + AluJb SINE Alu 24 291 -21 476 300 15 70 chr4 120866171 120866371 -81461976 + MER5A DNA MER1_type 1 189 0 24 0 0 0 chr4 120867061 120867085 -81461262 + AT_rich Low_complexity Low_complexity 1 24 0 253 355 28 0 chr4 120867542 120867649 -81460698 - MIR SINE MIR 0 262 153 453 265 164 26 chr4 120867658 120867847 -81460500 - MIR SINE MIR -14 248 34 334 286 81 68 chr4 120868473 120868818 -81459529 + L1ME4a LINE L1 5601 5955 -166 1902 143 31 3 chr4 120868818 120869112 -81459235 - AluSq SINE Alu -11 302 1 334 286 81 68 chr4 120869112 120869210 -81459137 + L1ME4a LINE L1 5955 6050 -71 203 0 37 0 chr4 120869230 120869257 -81459090 + (TA)n Simple_repeat Simple_repeat 1 28 0 315 0 0 0 chr4 120871641 120871676 -81456671 + (CA)n Simple_repeat Simple_repeat 1 35 0 2187 99 3 43 chr4 120872045 120872367 -81455980 - AluSx SINE Alu -3 309 1 804 153 0 8 chr4 120872692 120872810 -81455537 - FLAM_C SINE Alu -15 118 2 328 354 53 0 chr4 120873082 120873195 -81455152 - L2 LINE L2 -29 3243 3125 372 94 0 0 chr4 120874141 120874194 -81454153 + (TG)n Simple_repeat Simple_repeat 1 53 0 181 345 147 17 chr4 120874397 120874513 -81453834 + L2 LINE L2 2243 2373 -941 180 0 0 0 chr4 120875177 120875197 -81453150 + (T)n Simple_repeat Simple_repeat 1 20 0 374 346 9 0 chr4 120875207 120875314 -81453033 + L2 LINE L2 3153 3260 -12 2491 77 3 0 chr4 120875928 120876238 -81452109 + AluSp SINE Alu 1 311 -2 1104 163 4 104 chr4 120876246 120876516 -81451831 - L1MB8 LINE L1 -9 6169 5927 435 69 0 0 chr4 120876563 120876621 -81451726 + AluJ/FLAM SINE Alu 1 58 -254 219 204 0 0 chr4 120878868 120878917 -81449430 + (TA)n Simple_repeat Simple_repeat 2 50 0 296 274 0 0 chr4 120879680 120879742 -81448605 - AluJo SINE Alu -156 146 85 2108 115 10 3 chr4 120879749 120880045 -81448302 - AluSq SINE Alu -15 298 1 1108 209 105 38 chr4 120880070 120880414 -81447933 - L1ME3A LINE L1 -9 6161 5795 483 299 75 25 chr4 120884815 120885056 -81443291 + MIR SINE MIR 6 258 -4 189 279 39 85 chr4 120885657 120885786 -81442561 - L3b LINE CR1 -87 1496 1374 224 316 60 23 chr4 120888019 120888152 -81440195 + L2 LINE L2 2619 2756 -558 1430 213 82 39 chr4 120888345 120888782 -81439565 + LTR40c LTR ERVL 1 456 -9 231 61 0 0 chr4 120889053 120889086 -81439261 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 3595 41 0 2 chr4 120889086 120889524 -81438823 - L1PA5 LINE L1 -11 6143 5707 2216 35 0 4 chr4 120889566 120889825 -81438522 - AluY SINE Alu -53 258 1 970 115 6 98 chr4 120890546 120890729 -81437618 + FRAM SINE Alu 1 166 -10 2239 105 0 13 chr4 120890731 120891035 -81437312 + AluSx SINE Alu 1 300 -12 313 309 60 20 chr4 120891152 120891301 -81437046 - MIR SINE MIR -27 235 81 453 311 83 10 chr4 120892675 120892868 -81435479 + MIR SINE MIR 55 261 -1 6081 263 128 33 chr4 120893877 120896838 -81431509 - L2 LINE L2 -1 3312 60 6988 50 14 2 chr4 120897162 120898412 -81429935 - L1PA7 LINE L1 -8 6146 4896 3965 66 4 0 chr4 120898412 120898915 -81429432 + L1P3 LINE L1 872 1376 -5085 452 59 15 0 chr4 120899006 120899074 -81429273 + (TC)n Simple_repeat Simple_repeat 2 70 0 204 233 0 0 chr4 120900228 120900271 -81428076 + L2 LINE L2 3269 3311 -2 230 303 40 13 chr4 120900275 120900351 -81427996 + MIR SINE MIR 83 160 -102 269 332 66 66 chr4 120901404 120901615 -81426732 - L2 LINE L2 -3 3269 3059 27 0 0 0 chr4 120901782 120901809 -81426538 + AT_rich Low_complexity Low_complexity 1 27 0 228 125 0 25 chr4 120902587 120902662 -81425685 - AluJo SINE Alu 0 318 245 1219 126 5 32 chr4 120902662 120902852 -81425495 - AluJo SINE Alu -124 188 4 303 214 24 36 chr4 120903187 120903271 -81425076 + MIR SINE MIR 180 262 0 2138 109 0 17 chr4 120903503 120903797 -81424550 + AluSq SINE Alu 1 289 -24 760 91 0 41 chr4 120904506 120904627 -81423720 - L1PA8 LINE L1 -2 6170 6055 315 256 99 73 chr4 120904792 120904983 -81423364 + MER112 DNA MER1_type 65 260 0 356 276 37 45 chr4 120905003 120905137 -81423210 + MIR SINE MIR 20 152 -110 24 0 0 0 chr4 120905363 120905387 -81422960 + AT_rich Low_complexity Low_complexity 1 24 0 202 324 15 29 chr4 120906556 120906624 -81421723 + L2 LINE L2 3206 3272 0 221 265 0 0 chr4 120907176 120907225 -81421122 + L2 LINE L2 3258 3306 -7 185 306 102 37 chr4 120908074 120908182 -81420165 - MIR SINE MIR -28 234 120 1495 167 66 28 chr4 120908970 120909257 -81419090 - AluJo SINE Alu -9 303 6 248 289 80 27 chr4 120909746 120909933 -81418414 - MARNA DNA Mariner -106 480 284 428 206 0 43 chr4 120910332 120910424 -81417923 + FRAM/FAM SINE Alu 1 87 -89 444 113 42 0 chr4 120910426 120910497 -81417850 - L1P4 LINE L1 -653 5515 5442 300 340 182 6 chr4 120910625 120910784 -81417563 - MIR3 SINE MIR -1 207 21 26 74 0 0 chr4 120912029 120912083 -81416264 + AT_rich Low_complexity Low_complexity 1 54 0 2644 138 75 11 chr4 120912793 120913249 -81415098 - L1PA16 LINE L1 -2 6164 5680 1890 81 0 0 chr4 120913249 120913495 -81414852 + L1PA6 LINE L1 5908 6154 0 428 127 0 220 chr4 120913496 120913646 -81414701 - L1PA16 LINE L1 -464 5692 5576 924 202 23 0 chr4 120913689 120913862 -81414485 - MER5A DNA MER1_type 0 189 13 27 29 0 0 chr4 120914601 120914635 -81413712 + AT_rich Low_complexity Low_complexity 1 34 0 317 293 41 16 chr4 120915346 120915469 -81412878 + LTR67 LTR ERVL 341 466 -91 26 64 0 0 chr4 120916965 120917012 -81411335 + AT_rich Low_complexity Low_complexity 1 47 0 2634 40 0 3 chr4 120917399 120917703 -81410644 + AluY SINE Alu 1 303 -8 237 196 0 0 chr4 120918375 120918426 -81409921 + (CA)n Simple_repeat Simple_repeat 2 52 0 2665 91 24 11 chr4 120918532 120918904 -81409443 - L1PA10 LINE L1 -5 6163 5787 2175 120 0 0 chr4 120919187 120919478 -81408869 + AluSx SINE Alu 1 291 -21 186 43 0 0 chr4 120919551 120919574 -81408773 + (CA)n Simple_repeat Simple_repeat 1 23 0 26 88 0 0 chr4 120919592 120919660 -81408687 + AT_rich Low_complexity Low_complexity 1 68 0 201 121 0 0 chr4 120920132 120920165 -81408182 + (A)n Simple_repeat Simple_repeat 1 33 0 344 322 56 65 chr4 120920444 120920873 -81407474 - L2 LINE L2 -436 2878 2454 1803 183 3 3 chr4 120920936 120921237 -81407110 - AluJo SINE Alu 0 312 12 2995 116 91 34 chr4 120921409 120921936 -81406411 - LTR49 LTR ERV1 0 595 33 4852 131 43 3 chr4 120921936 120922687 -81405660 - LTR39 LTR ERV1 0 783 3 2995 116 91 34 chr4 120922687 120922722 -81405625 - LTR49 LTR ERV1 -562 33 1 851 282 43 20 chr4 120922955 120923210 -81405137 + MIR SINE MIR 2 262 0 206 274 107 12 chr4 120924108 120924192 -81404155 - MIR3 SINE MIR -25 183 92 180 192 192 0 chr4 120924534 120924586 -81403761 - MIR SINE MIR -109 153 92 560 254 48 75 chr4 120924983 120925251 -81403096 + MIR SINE MIR 2 262 0 22 0 0 0 chr4 120926121 120926143 -81402204 + AT_rich Low_complexity Low_complexity 1 22 0 234 320 54 14 chr4 120926252 120926399 -81401948 + L1M4 LINE L1 4056 4208 -1938 27 0 0 0 chr4 120926399 120926426 -81401921 + AT_rich Low_complexity Low_complexity 1 27 0 24 53 0 0 chr4 120926932 120926970 -81401377 + AT_rich Low_complexity Low_complexity 1 38 0 590 234 133 0 chr4 120927685 120927843 -81400504 + MIR SINE MIR 76 254 -8 256 288 17 0 chr4 120928130 120928189 -81400158 - L2 LINE L2 -17 3296 3237 1572 154 84 44 chr4 120929933 120930231 -81398116 - MER1B DNA MER1_type -24 315 6 21 0 0 0 chr4 120931285 120931306 -81397041 + AT_rich Low_complexity Low_complexity 1 21 0 44 26 0 39 chr4 120931795 120931872 -81396475 + AT_rich Low_complexity Low_complexity 1 74 0 243 332 44 70 chr4 120932644 120932873 -81395474 - MLT1K LTR MaLR -346 242 20 23 54 0 0 chr4 120932932 120932969 -81395378 + AT_rich Low_complexity Low_complexity 1 37 0 240 338 39 39 chr4 120933296 120933450 -81394897 - L2 LINE L2 -1 3312 3159 2284 100 3 0 chr4 120933823 120934124 -81394223 + AluSx SINE Alu 1 302 -10 220 374 38 8 chr4 120934180 120934311 -81394036 - L2 LINE L2 -605 2709 2575 419 300 100 30 chr4 120934404 120934604 -81393743 + MIR SINE MIR 2 215 -47 707 181 0 0 chr4 120934837 120934964 -81393383 - AluSg/x SINE Alu -7 305 179 225 280 178 17 chr4 120935018 120935136 -81393211 + MIR SINE MIR 20 156 -106 1724 246 81 33 chr4 120936160 120936701 -81391646 - MLT1F1 LTR MaLR 0 567 1 309 264 28 0 chr4 120936735 120936807 -81391540 - L2 LINE L2 0 3313 3240 190 241 121 36 chr4 120936912 120936995 -81391352 + MIR SINE MIR 59 148 -114 180 0 0 0 chr4 120937322 120937342 -81391005 + (T)n Simple_repeat Simple_repeat 1 20 0 280 360 81 22 chr4 120939043 120939179 -81389168 + L2 LINE L2 3125 3268 -4 217 328 23 82 chr4 120939724 120939895 -81388452 + L2 LINE L2 2579 2739 -575 303 339 8 23 chr4 120939957 120940087 -81388260 - MER5B DNA MER1_type -44 134 7 258 232 131 10 chr4 120940151 120940250 -81388097 + MIR SINE MIR 44 154 -108 310 254 15 0 chr4 120940311 120940378 -81387969 + MER94 DNA DNA 54 121 -13 3799 72 4 6 chr4 120940637 120941154 -81387193 - L1PB1 LINE L1 -2 6149 5634 579 306 85 38 chr4 120941207 120941569 -81386778 - MER115 DNA AcHobo -3 4028 3684 1905 196 130 0 chr4 120941569 120942014 -81386333 - MLT1D LTR MaLR 0 505 3 579 306 85 38 chr4 120942014 120942115 -81386232 - MER115 DNA AcHobo -347 3684 187 254 206 14 41 chr4 120942182 120942255 -81386092 - MER115 DNA AcHobo -620 73 3 1173 65 0 0 chr4 120942834 120942973 -81385374 + AluSg/x SINE Alu 157 295 -17 281 252 25 59 chr4 120943275 120943394 -81384953 + L2 LINE L2 3156 3270 -2 2529 77 0 6 chr4 120943486 120943797 -81384550 - AluSg SINE Alu -1 309 1 2220 93 14 0 chr4 120944054 120944345 -81384002 - AluSg SINE Alu -15 295 1 2860 3 0 3 chr4 120945545 120945880 -81382467 - AluYa5 SINE Alu 0 334 1 1457 115 0 32 chr4 120947963 120948181 -81380166 - AluSx SINE Alu -101 211 1 2358 62 10 0 chr4 120948193 120948483 -81379864 - AluY SINE Alu -18 293 1 21 0 0 0 chr4 120948615 120948636 -81379711 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr4 120952676 120952711 -81375636 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 120953656 120953679 -81374668 + AT_rich Low_complexity Low_complexity 1 23 0 1850 167 0 7 chr4 120953797 120954085 -81374262 - AluJo SINE Alu -26 286 1 451 307 147 0 chr4 120955266 120955429 -81372918 + MIR SINE MIR 1 187 -75 341 277 99 0 chr4 120956671 120956772 -81371575 - L2 LINE L2 0 3313 3203 676 258 0 36 chr4 120956860 120957027 -81371320 + MER63A DNA MER1_type 46 206 -4 3367 74 7 0 chr4 120957065 120957512 -81370835 - L1PA7 LINE L1 -2 6152 5703 2320 139 24 16 chr4 120957803 120958192 -81370155 - THE1C LTR MaLR 0 375 1 2177 94 31 3 chr4 120958253 120958541 -81369806 - AluSp SINE Alu -17 296 1 189 0 0 0 chr4 120958571 120958592 -81369755 + (TTG)n Simple_repeat Simple_repeat 1 21 0 345 236 5 161 chr4 120959221 120959420 -81368927 - MIR SINE MIR -32 230 63 408 263 91 55 chr4 120960613 120960887 -81367460 - LTR33 LTR ERVL -2 519 236 748 199 0 0 chr4 120960928 120961069 -81367278 - LTR33 LTR ERVL -380 141 1 217 274 0 16 chr4 120961958 120962020 -81366327 + CT-rich Low_complexity Low_complexity 2 62 0 251 297 13 81 chr4 120963823 120963921 -81364426 - L2 LINE L2 0 3313 3210 2576 65 0 0 chr4 120963921 120964227 -81364120 - AluY SINE Alu -5 306 1 251 297 13 81 chr4 120964227 120964364 -81363983 - L2 LINE L2 -103 3210 3094 1132 251 317 33 chr4 120964374 120964423 -81363924 + L2 LINE L2 447 481 -2833 1882 122 47 101 chr4 120964423 120964808 -81363539 - THE1B LTR MaLR 0 364 1 1132 251 317 33 chr4 120964808 120965576 -81362771 + L2 LINE L2 481 1496 -1818 2273 300 105 23 chr4 120965579 120966832 -81361515 + L2 LINE L2 1955 3312 -1 21 0 0 0 chr4 120969663 120969684 -81358663 + AT_rich Low_complexity Low_complexity 1 21 0 203 152 0 0 chr4 120970914 120970947 -81357400 + (TG)n Simple_repeat Simple_repeat 2 34 0 195 42 0 0 chr4 120972248 120972272 -81356075 + (T)n Simple_repeat Simple_repeat 1 24 0 232 197 16 0 chr4 120972314 120972375 -81355972 + (CAAA)n Simple_repeat Simple_repeat 2 63 0 24 32 0 0 chr4 120972721 120972752 -81355595 + AT_rich Low_complexity Low_complexity 1 31 0 882 131 86 6 chr4 120973004 120973179 -81355168 - MER53 DNA DNA 0 189 1 1024 137 7 0 chr4 120974352 120974498 -81353849 + AluSq SINE Alu 137 283 -30 1443 199 61 4 chr4 120974676 120974838 -81353509 - AluJo SINE Alu -17 295 109 189 0 0 0 chr4 120974838 120974859 -81353488 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1443 199 61 4 chr4 120974859 120974973 -81353374 - AluJo SINE Alu -203 109 3 1293 191 105 32 chr4 120975019 120975333 -81353014 - MER2 DNA MER2_type -8 337 1 2368 92 0 0 chr4 120975354 120975657 -81352690 + AluSg SINE Alu 2 304 -6 1326 107 0 0 chr4 120977005 120977182 -81351165 + AluSp SINE Alu 121 297 -16 14743 93 4 2 chr4 120978411 120979042 -81349305 - L1PA7 LINE L1 -8 6461 5833 2238 106 3 0 chr4 120979042 120979334 -81349013 + AluSp SINE Alu 2 294 -19 14743 93 4 2 chr4 120979334 120981551 -81346796 - L1PA7 LINE L1 -636 5833 3612 4648 95 5 0 chr4 120981551 120982184 -81346163 - L1PA7 LINE L1 -5825 636 1 283 195 24 61 chr4 120982197 120982279 -81346068 + MIR3 SINE MIR 127 205 -3 23 33 0 0 chr4 120982856 120982886 -81345461 + AT_rich Low_complexity Low_complexity 1 30 0 271 338 0 0 chr4 120983201 120983269 -81345078 - MER5A DNA MER1_type -118 71 4 255 103 0 0 chr4 120983910 120983949 -81344398 + (CA)n Simple_repeat Simple_repeat 1 39 0 36 40 0 0 chr4 120985384 120985434 -81342913 + AT_rich Low_complexity Low_complexity 1 50 0 184 307 102 47 chr4 120985594 120985721 -81342626 + MIR SINE MIR 21 154 -108 2466 73 0 0 chr4 120988383 120988686 -81339661 - AluY SINE Alu -8 303 1 721 271 81 29 chr4 120991772 120991982 -81336365 - MIR SINE MIR -30 232 12 28 29 0 0 chr4 120992062 120992097 -81336250 + AT_rich Low_complexity Low_complexity 1 35 0 261 169 22 11 chr4 120992126 120992215 -81336132 + (TA)n Simple_repeat Simple_repeat 2 91 0 1675 173 3 7 chr4 120993714 120994003 -81334344 + AluJb SINE Alu 14 301 -11 185 277 15 46 chr4 120994307 120994372 -81333975 + L3 LINE CR1 885 947 -630 465 246 69 8 chr4 120994373 120994503 -81333844 + L2 LINE L2 3167 3304 -9 814 331 89 17 chr4 120994534 120994939 -81333408 + L3 LINE CR1 993 1426 -151 26 30 0 0 chr4 120996008 120996041 -81332306 + AT_rich Low_complexity Low_complexity 1 33 0 231 274 0 0 chr4 120996045 120996118 -81332229 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 21 0 0 0 chr4 120996913 120996934 -81331413 + AT_rich Low_complexity Low_complexity 1 21 0 3114 137 38 27 chr4 120997597 120998145 -81330202 - MER21A LTR ERV1 -2 929 376 1215 154 32 32 chr4 120998150 120998396 -81329951 - MER21A LTR ERV1 -667 264 19 355 220 90 60 chr4 120999214 120999314 -81329033 + L2 LINE L2 3191 3293 -20 1885 148 26 10 chr4 121001651 121001956 -81326391 - AluJo SINE Alu -2 310 1 26 88 0 0 chr4 121002141 121002209 -81326138 + AT_rich Low_complexity Low_complexity 1 68 0 189 0 0 0 chr4 121003081 121003102 -81325245 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 253 176 91 18 chr4 121003210 121003293 -81325054 - MIR SINE MIR -65 143 51 27 92 0 0 chr4 121003489 121003565 -81324782 + AT_rich Low_complexity Low_complexity 1 76 0 222 250 0 0 chr4 121003575 121003623 -81324724 + L2 LINE L2 3224 3271 -1 223 306 16 0 chr4 121004249 121004311 -81324036 + MIR SINE MIR 87 149 -113 215 128 0 26 chr4 121005842 121005881 -81322466 + (TC)n Simple_repeat Simple_repeat 2 39 0 237 325 48 0 chr4 121007600 121007683 -81320664 - L2 LINE L2 0 3313 3227 221 352 0 14 chr4 121008518 121008589 -81319758 - MIR SINE MIR -191 71 2 25 51 0 0 chr4 121009389 121009428 -81318919 + AT_rich Low_complexity Low_complexity 1 39 0 812 155 52 0 chr4 121009525 121009680 -81318667 + L1MA4 LINE L1 5999 6161 -139 268 143 0 0 chr4 121009698 121009740 -81318607 - Alu SINE Alu -250 50 9 696 153 46 0 chr4 121009877 121010008 -81318339 + L1MA3 LINE L1 6169 6305 0 1343 151 102 56 chr4 121010225 121010509 -81317838 - AluJb SINE Alu -7 305 9 23 54 0 0 chr4 121010689 121010726 -81317621 + AT_rich Low_complexity Low_complexity 1 37 0 196 265 0 0 chr4 121011380 121011429 -81316918 - L2 LINE L2 -1 3312 3264 2141 123 0 0 chr4 121011868 121012169 -81316178 + AluSq SINE Alu 1 301 -12 576 289 5 64 chr4 121012262 121012449 -81315898 - MER5B DNA MER1_type -1 177 2 39 50 0 0 chr4 121012480 121012540 -81315807 + AT_rich Low_complexity Low_complexity 1 60 0 246 315 182 33 chr4 121013062 121013243 -81315104 - L2 LINE L2 -211 3061 2854 2210 104 49 32 chr4 121013763 121013824 -81314523 - L1MA8 LINE L1 -2 6289 6231 315 0 0 0 chr4 121013824 121013859 -81314488 + (CA)n Simple_repeat Simple_repeat 2 36 0 2210 104 49 32 chr4 121013859 121014202 -81314145 - L1MA8 LINE L1 -60 6231 5878 233 320 53 0 chr4 121014217 121014292 -81314055 + L2 LINE L2 3235 3313 0 841 288 40 8 chr4 121014365 121014615 -81313732 - MIR SINE MIR -1 261 4 21 89 0 0 chr4 121017349 121017405 -81310942 + AT_rich Low_complexity Low_complexity 1 56 0 2823 0 0 0 chr4 121017504 121017805 -81310542 + AluYa5 SINE Alu 1 301 -10 23 33 0 0 chr4 121017864 121017894 -81310453 + AT_rich Low_complexity Low_complexity 1 30 0 380 204 39 171 chr4 121019074 121019255 -81309092 - MIR SINE MIR -58 204 48 1909 121 48 3 chr4 121019858 121020148 -81308199 - AluSx SINE Alu -9 303 1 422 329 186 20 chr4 121020683 121021075 -81307272 - L2 LINE L2 -868 2446 1990 1783 149 14 18 chr4 121021939 121022265 -81306082 - AluJo SINE Alu 0 325 1 2248 110 3 0 chr4 121022870 121023162 -81305185 - AluSx SINE Alu -19 293 1 427 293 126 0 chr4 121023925 121024092 -81304255 - MIR SINE MIR -12 250 63 672 147 7 77 chr4 121024595 121024738 -81303609 + FLAM_A SINE Alu 1 133 0 238 310 149 6 chr4 121025062 121025236 -81303111 - L2 LINE L2 -228 3044 2846 2551 52 7 3 chr4 121028065 121028371 -81299976 + AluY SINE Alu 3 309 -2 21 0 0 0 chr4 121030518 121030539 -81297808 + AT_rich Low_complexity Low_complexity 1 21 0 41 48 0 0 chr4 121031816 121031878 -81296469 + AT_rich Low_complexity Low_complexity 1 62 0 428 180 133 78 chr4 121032758 121032818 -81295529 + MER5B DNA MER1_type 4 59 -119 2146 125 0 10 chr4 121032818 121033131 -81295216 + AluSg SINE Alu 1 310 0 428 180 133 78 chr4 121033131 121033198 -81295149 + MER5B DNA MER1_type 59 138 -40 574 280 89 17 chr4 121033487 121033723 -81294624 + MIR SINE MIR 8 260 -2 1968 128 7 4 chr4 121034197 121034478 -81293869 - AluSx SINE Alu -30 282 1 237 137 20 0 chr4 121035163 121035214 -81293133 + L1MC1 LINE L1 6282 6333 0 550 324 7 0 chr4 121037821 121037969 -81290378 - MIR3 SINE MIR -12 196 48 223 278 0 0 chr4 121038073 121038127 -81290220 + MIR SINE MIR 203 256 -6 220 205 0 51 chr4 121038978 121039056 -81289291 + CT-rich Low_complexity Low_complexity 2 75 0 1671 185 7 14 chr4 121039166 121039463 -81288884 + AluJo SINE Alu 1 295 -17 315 311 0 42 chr4 121039983 121040102 -81288245 - L2 LINE L2 0 3313 3200 245 371 57 9 chr4 121040200 121040305 -81288042 + L2 LINE L2 3154 3263 -9 21 0 0 0 chr4 121042478 121042499 -81285848 + AT_rich Low_complexity Low_complexity 1 21 0 228 169 34 34 chr4 121045345 121045404 -81282943 + L1M2b LINE L1 1700 1758 -5451 354 45 0 0 chr4 121045734 121045778 -81282569 + (TG)n Simple_repeat Simple_repeat 2 45 0 1820 102 99 0 chr4 121046656 121046940 -81281407 + AluSx SINE Alu 1 312 0 459 250 120 37 chr4 121047014 121047230 -81281117 - Charlie8 DNA MER1_type -2144 273 40 22 56 0 0 chr4 121047615 121047651 -81280696 + AT_rich Low_complexity Low_complexity 1 36 0 445 325 75 5 chr4 121047923 121048111 -81280236 - MIR SINE MIR -23 239 39 271 313 122 15 chr4 121048152 121048283 -81280064 - L2 LINE L2 -8 3305 3161 21 0 0 0 chr4 121048647 121048668 -81279679 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 121049328 121049352 -81278995 + AT_rich Low_complexity Low_complexity 1 24 0 287 323 0 0 chr4 121050210 121050306 -81278041 + A-rich Low_complexity Low_complexity 1 96 0 3648 263 173 23 chr4 121052202 121053087 -81275260 + L2 LINE L2 1065 1816 -1497 618 233 31 0 chr4 121053087 121053216 -81275131 - FLAM_A SINE Alu 0 133 1 3648 263 173 23 chr4 121053216 121054267 -81274080 + L2 LINE L2 1816 3313 0 469 283 64 12 chr4 121054430 121054603 -81273744 - MLT1L LTR MaLR -5 610 429 412 257 95 42 chr4 121056844 121057128 -81271219 - L1ME4a LINE L1 -204 5917 5619 253 315 110 31 chr4 121057162 121057289 -81271058 - MIR3 SINE MIR -68 140 4 1100 85 11 11 chr4 121057704 121057881 -81270466 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 415 113 25 12 chr4 121057887 121057967 -81270380 + GA-rich Low_complexity Low_complexity 4 84 0 531 213 37 15 chr4 121058126 121058262 -81270085 - Charlie1 DNA MER1_type 0 2761 2623 319 194 28 0 chr4 121058247 121058319 -81270028 - Charlie1 DNA MER1_type -2521 240 167 * 1283 157 0 20 chr4 121058319 121058523 -81269824 - AluJb SINE Alu -16 296 97 432 268 25 9 chr4 121059071 121059369 -81268978 + (TTAA)n Simple_repeat Simple_repeat 1 302 0 439 329 107 9 chr4 121061488 121061704 -81266643 - MIR SINE MIR -3 259 23 40 49 0 0 chr4 121062579 121062640 -81265707 + AT_rich Low_complexity Low_complexity 1 61 0 324 313 52 83 chr4 121062686 121062916 -81265431 - L3b LINE CR1 -105 1478 1256 2601 59 0 0 chr4 121063093 121063398 -81264949 - AluY SINE Alu -6 305 1 250 216 81 81 chr4 121064414 121064525 -81263822 - MIR SINE MIR -48 214 104 291 333 114 0 chr4 121064598 121064703 -81263644 + 7SLRNA srpRNA srpRNA 1 117 -203 1952 115 14 14 chr4 121064960 121065291 -81263056 + AluJb SINE Alu 1 331 0 424 70 0 0 chr4 121065357 121065428 -81262919 + Alu SINE Alu 242 312 0 295 297 23 31 chr4 121066006 121066134 -81262213 + CT-rich Low_complexity Low_complexity 1 127 0 22 0 0 0 chr4 121066476 121066498 -81261849 + AT_rich Low_complexity Low_complexity 1 22 0 2321 91 3 0 chr4 121066968 121067264 -81261083 + AluSx SINE Alu 1 297 -15 3755 157 53 87 chr4 121068755 121069656 -81258691 + L1MB4 LINE L1 5302 6172 -8 1719 110 34 0 chr4 121069757 121070020 -81258327 + AluSq SINE Alu 37 308 -5 3104 248 60 12 chr4 121070374 121071270 -81257077 + L1MEc LINE L1 49 987 -5409 1681 210 53 38 chr4 121071316 121071845 -81256502 - L1M4 LINE L1 -2364 3782 3246 21 0 0 0 chr4 121071922 121071943 -81256404 + AT_rich Low_complexity Low_complexity 1 21 0 2171 123 10 0 chr4 121072376 121072685 -81255662 + AluSx SINE Alu 1 312 0 320 310 192 10 chr4 121072994 121073197 -81255150 + MIR SINE MIR 22 261 -1 231 191 0 0 chr4 121073197 121073239 -81255108 + (ATG)n Simple_repeat Simple_repeat 2 43 0 2409 171 43 14 chr4 121073307 121073797 -81254550 - L1MB8 LINE L1 -9 6169 5666 818 294 89 15 chr4 121073842 121074179 -81254168 + LTR16A LTR ERVL 13 374 -76 315 49 0 0 chr4 121074875 121074916 -81253431 + (GA)n Simple_repeat Simple_repeat 2 42 0 387 0 0 0 chr4 121075921 121075964 -81252383 + (TG)n Simple_repeat Simple_repeat 2 44 0 502 273 59 48 chr4 121077352 121077691 -81250656 - MLT1J2 LTR MaLR 0 450 64 845 273 34 30 chr4 121078258 121078555 -81249792 + MER110 LTR ERV1 167 464 -27 483 286 68 45 chr4 121079151 121079513 -81248834 - MLT1J2 LTR MaLR -37 413 64 216 266 62 31 chr4 121079675 121079739 -81248608 + L2 LINE L2 2569 2634 -680 1962 181 103 37 chr4 121079742 121080206 -81248141 - MLT1D LTR MaLR -10 495 1 229 355 14 101 chr4 121080257 121080642 -81247705 + L2 LINE L2 2678 3033 -239 727 303 143 41 chr4 121080693 121081136 -81247211 + L2 LINE L2 1120 1635 -1679 2094 128 17 0 chr4 121081136 121081432 -81246915 - AluSx SINE Alu -11 301 1 727 303 143 41 chr4 121081432 121081555 -81246792 + L2 LINE L2 1635 1744 -1570 1470 106 0 0 chr4 121081664 121081862 -81246485 - AluY SINE Alu -113 198 1 246 179 54 0 chr4 121081866 121081922 -81246425 - LTR8A LTR ERV1 -668 59 1 44374 36 1 7 chr4 121082050 121088234 -81240113 + L1PA4 LINE L1 3 6152 -3 3411 195 19 18 chr4 121088363 121089278 -81239069 - L1MB7 LINE L1 -175 6009 5091 1746 176 0 16 chr4 121089282 121089589 -81238758 - AluJo SINE Alu -10 302 1 367 267 12 0 chr4 121089644 121089730 -81238617 + L1MC4 LINE L1 6614 6700 -1342 33 56 0 0 chr4 121090792 121090846 -81237501 + AT_rich Low_complexity Low_complexity 1 54 0 333 320 28 17 chr4 121090884 121091065 -81237282 + HAL1b LINE L1 278 460 -888 24 0 0 0 chr4 121091068 121091092 -81237255 + AT_rich Low_complexity Low_complexity 1 24 0 1328 252 71 5 chr4 121091297 121091863 -81236484 - L1MEc LINE L1 -3623 2917 2361 767 236 51 48 chr4 121091959 121092252 -81236095 - L1MEc LINE L1 -4333 2388 2095 1242 97 0 0 chr4 121092261 121092426 -81235921 - U1 snRNA snRNA 0 165 1 749 257 88 98 chr4 121092457 121092599 -81235748 - L1MEc LINE L1 -4711 1829 1687 1913 164 13 0 chr4 121092599 121092909 -81235438 - 7SLRNA srpRNA srpRNA -6 314 1 749 257 88 98 chr4 121092909 121093289 -81235058 - L1MEc LINE L1 -4853 1687 1314 1275 162 19 9 chr4 121093365 121093575 -81234772 - AluJo SINE Alu -15 297 86 218 184 53 0 chr4 121094046 121094122 -81234225 + GA-rich Low_complexity Low_complexity 2 81 0 885 211 11 0 chr4 121094222 121094412 -81233935 + L1PB1 LINE L1 6 197 -6666 * 5122 153 28 6 chr4 121094409 121095324 -81233023 + L1PB1 LINE L1 1392 2327 -4536 * 8204 161 13 4 chr4 121095317 121097776 -81230571 + L1PB1 LINE L1 4391 6865 -2 238 250 163 0 chr4 121098063 121098143 -81230204 + MIR3 SINE MIR 92 184 -24 1393 167 41 104 chr4 121098389 121098803 -81229544 - MLT1B LTR MaLR 0 390 3 448 277 10 94 chr4 121099744 121099813 -81228534 - MER5A DNA MER1_type -1 188 115 1992 134 25 0 chr4 121099813 121100097 -81228250 + AluSx SINE Alu 3 293 -19 448 277 10 94 chr4 121100097 121100229 -81228118 - MER5A DNA MER1_type -74 115 4 265 244 56 22 chr4 121100982 121101072 -81227275 + L2 LINE L2 3203 3295 -18 237 359 99 36 chr4 121102040 121102263 -81226084 + MIR SINE MIR 7 243 -19 1739 168 11 0 chr4 121102269 121102572 -81225775 + AluJo SINE Alu 9 314 0 321 222 0 0 chr4 121102770 121102842 -81225505 + MER116 DNA Mariner 6 77 -3 21 36 0 0 chr4 121103120 121103148 -81225199 + AT_rich Low_complexity Low_complexity 1 28 0 2502 87 0 0 chr4 121103553 121103863 -81224484 + AluSg SINE Alu 1 310 0 567 284 80 48 chr4 121105085 121105437 -81222910 + L2 LINE L2 2950 3312 -1 532 300 13 79 chr4 121106661 121106888 -81221459 + MIR SINE MIR 41 252 -10 283 284 32 21 chr4 121107883 121107978 -81220369 + MLT1J2 LTR MaLR 296 391 -59 222 194 0 0 chr4 121108749 121108785 -81219562 - MIR SINE MIR -9 253 218 2133 110 3 0 chr4 121110220 121110512 -81217835 - AluSx SINE Alu -19 293 1 2268 127 8 8 chr4 121110806 121111161 -81217186 - THE1A LTR MaLR 0 355 1 11693 93 6 4 chr4 121111161 121112739 -81215608 - THE1A-int LTR MaLR 0 1580 1 2561 91 8 3 chr4 121112739 121113092 -81215255 - THE1A LTR MaLR 0 355 1 22 80 0 0 chr4 121113096 121113146 -81215201 + AT_rich Low_complexity Low_complexity 1 50 0 324 308 122 6 chr4 121113149 121113321 -81215026 - L1ME4a LINE L1 -3 6118 5927 397 215 0 54 chr4 121113348 121113534 -81214813 + (TATATG)n Simple_repeat Simple_repeat 1 176 0 1217 180 70 11 chr4 121113643 121113927 -81214420 + L1MB4 LINE L1 5874 6174 -6 1178 134 85 16 chr4 121113939 121114186 -81214161 + L1MA9 LINE L1 6048 6311 -1 288 93 0 0 chr4 121114564 121114607 -81213740 - MADE1 DNA Mariner -37 43 1 614 184 0 0 chr4 121115038 121115136 -81213211 + FLAM_A SINE Alu 5 102 -40 38 39 0 0 chr4 121115692 121115744 -81212603 + AT_rich Low_complexity Low_complexity 1 52 0 911 133 0 15 chr4 121116154 121116289 -81212058 + FLAM_C SINE Alu 1 133 0 193 114 0 0 chr4 121116903 121116938 -81211409 + MIR SINE MIR 100 134 -128 570 269 20 0 chr4 121117147 121117296 -81211051 + Charlie1 DNA MER1_type 91 242 -2519 500 223 23 15 chr4 121117288 121117418 -81210929 + Charlie1 DNA MER1_type 2631 2761 0 * 217 259 83 65 chr4 121117518 121117626 -81210721 - MIR SINE MIR -48 214 105 22 0 0 0 chr4 121117860 121117882 -81210465 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr4 121118823 121118865 -81209482 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr4 121119923 121119949 -81208398 + AT_rich Low_complexity Low_complexity 1 26 0 498 237 103 10 chr4 121130592 121130825 -81197522 - L1ME4a LINE L1 -297 5824 5559 190 27 0 81 chr4 121130890 121130927 -81197420 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1676 187 0 21 chr4 121130930 121131214 -81197133 - AluJo SINE Alu -30 282 5 3994 171 12 6 chr4 121132050 121132781 -81195566 + MER6 DNA MER2_type 1 736 -129 723 217 21 21 chr4 121133113 121133302 -81195045 + MER53 DNA DNA 1 189 0 419 35 18 0 chr4 121133657 121133714 -81194633 + (TG)n Simple_repeat Simple_repeat 1 58 0 188 294 261 37 chr4 121133789 121134115 -81194232 + L2 LINE L2 605 1003 -2311 1566 291 90 44 chr4 121134146 121135412 -81192935 + L2 LINE L2 1294 3313 0 280 292 34 0 chr4 121135428 121135517 -81192830 + L2 LINE L2 2721 2812 -502 * 364 333 0 0 chr4 121135513 121135630 -81192717 + MIR SINE MIR 146 262 0 274 258 11 54 chr4 121136538 121136631 -81191716 + MIR SINE MIR 84 172 -90 2387 77 7 3 chr4 121138945 121139244 -81189103 + AluY SINE Alu 1 300 -11 266 292 99 53 chr4 121139259 121139430 -81188917 + MER5A DNA MER1_type 7 185 -4 187 155 0 35 chr4 121139433 121139491 -81188856 + (TTAAA)n Simple_repeat Simple_repeat 1 56 0 21 0 0 0 chr4 121140185 121140206 -81188141 + AT_rich Low_complexity Low_complexity 1 21 0 2224 110 3 0 chr4 121142399 121142690 -81185657 - AluSx SINE Alu -19 293 2 306 311 10 19 chr4 121143580 121143683 -81184664 + MER5B DNA MER1_type 7 108 -70 2605 64 0 0 chr4 121143911 121144222 -81184125 + AluY SINE Alu 1 311 0 282 264 174 47 chr4 121144238 121144450 -81183897 + MER46C DNA MER2_type 1 239 -99 5333 191 63 78 chr4 121144450 121144468 -81183879 - Tigger3b DNA MER2_type -1797 1231 1214 893 79 94 0 chr4 121144468 121144595 -81183752 + MER85 DNA T2_type 1 139 0 5333 191 63 78 chr4 121144595 121145825 -81182522 - Tigger3b DNA MER2_type -1814 1214 1 454 151 9 85 chr4 121145825 121145927 -81182420 + MER46C DNA MER2_type 245 338 0 264 326 51 29 chr4 121147641 121147779 -81180568 - MIR3 SINE MIR -6 202 62 185 344 112 48 chr4 121148366 121148491 -81179856 + MIR SINE MIR 4 136 -126 495 55 14 0 chr4 121148573 121148646 -81179701 + MER41B LTR ERV1 481 554 -81 2146 121 0 3 chr4 121148769 121149059 -81179288 + AluSx SINE Alu 1 289 -23 22 56 0 0 chr4 121149579 121149615 -81178732 + AT_rich Low_complexity Low_complexity 1 36 0 219 139 0 0 chr4 121151013 121151049 -81177298 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 207 299 209 0 chr4 121152267 121152334 -81176013 - L2 LINE L2 -33 3239 3159 22 56 0 0 chr4 121152568 121152604 -81175743 + AT_rich Low_complexity Low_complexity 1 36 0 218 300 70 40 chr4 121153892 121153992 -81174355 + MIR SINE MIR 45 147 -61 3300 87 18 2 chr4 121154336 121154782 -81173565 - MLT2A2 LTR ERVL 0 453 1 1684 188 12 70 chr4 121155322 121155736 -81172611 - MLT1B LTR MaLR 0 390 1 251 229 24 60 chr4 121155739 121155822 -81172525 - LTR33A LTR ERVL -11 512 433 2644 107 107 2 chr4 121155851 121156272 -81172075 - MER4C LTR ERV1 0 465 1 185 308 13 51 chr4 121156673 121156751 -81171596 - L2 LINE L2 -1 3271 3197 438 298 204 0 chr4 121156775 121156956 -81171391 - MIR SINE MIR -11 251 34 185 283 62 80 chr4 121157144 121157257 -81171090 + L2 LINE L2 1310 1420 -1894 271 150 0 0 chr4 121157282 121157322 -81171025 - MLT2D LTR ERVL -8 406 367 240 143 0 0 chr4 121157325 121157367 -81170980 + (TG)n Simple_repeat Simple_repeat 1 42 0 1320 245 108 21 chr4 121157372 121157800 -81170547 - MLT2B2 LTR ERVL -50 465 1 1746 160 32 111 chr4 121157911 121158317 -81170030 + MLT1A1 LTR MaLR 1 365 0 330 313 113 60 chr4 121158794 121158934 -81169413 + L1MC/D LINE L1 3153 3284 -2862 1766 181 6 16 chr4 121158934 121159249 -81169098 + AluJo SINE Alu 1 312 0 330 313 113 60 chr4 121159249 121159622 -81168725 + L1MC/D LINE L1 3284 3693 -2453 252 304 89 23 chr4 121159649 121159906 -81168441 + L1MC/D LINE L1 3700 3973 -2173 782 161 8 0 chr4 121160170 121160294 -81168053 - AluJb SINE Alu -187 125 1 420 20 0 0 chr4 121160960 121161009 -81167338 + (CA)n Simple_repeat Simple_repeat 2 50 0 464 297 79 36 chr4 121161834 121162164 -81166183 + L1MC/D LINE L1 5302 5645 -2163 1740 109 147 8 chr4 121162295 121162561 -81165786 + AluSg SINE Alu 3 305 -5 904 122 6 6 chr4 121162727 121162883 -81165464 + (TTCC)n Simple_repeat Simple_repeat 3 158 0 325 293 49 41 chr4 121163358 121163481 -81164866 + MIR3 SINE MIR 79 202 -6 550 302 48 5 chr4 121163598 121163787 -81164560 - MIR SINE MIR -8 254 58 323 306 74 0 chr4 121164316 121164437 -81163910 + L2 LINE L2 3175 3304 -9 1142 150 81 65 chr4 121164823 121165069 -81163278 - AluJb SINE Alu -19 293 44 2227 98 3 0 chr4 121166210 121166505 -81161842 + AluSc SINE Alu 1 296 -13 195 69 0 0 chr4 121166549 121166578 -81161769 + (TG)n Simple_repeat Simple_repeat 2 30 0 556 241 3 3 chr4 121167249 121167580 -81160767 + (CA)n Simple_repeat Simple_repeat 1 331 0 23 0 0 0 chr4 121170647 121170670 -81157677 + AT_rich Low_complexity Low_complexity 1 23 0 1708 169 3 35 chr4 121171419 121171732 -81156615 - AluJo SINE Alu -6 306 4 2038 109 49 0 chr4 121171849 121172133 -81156214 - AluSq SINE Alu -13 300 3 26 0 0 0 chr4 121172883 121172909 -81155438 + AT_rich Low_complexity Low_complexity 1 26 0 1609 176 10 21 chr4 121172909 121173199 -81155148 - AluJb SINE Alu -25 287 1 227 294 0 0 chr4 121173476 121173527 -81154820 - L2 LINE L2 0 3272 3222 180 282 0 0 chr4 121173497 121173536 -81154811 - MIR SINE MIR -15 247 209 * 288 306 75 14 chr4 121173573 121173720 -81154627 - L2 LINE L2 -220 3052 2897 240 331 39 46 chr4 121173771 121173901 -81154446 - L2 LINE L2 -173 3099 2971 564 129 0 0 chr4 121174479 121174580 -81153767 + (TCTG)n Simple_repeat Simple_repeat 2 102 0 216 274 0 0 chr4 121175290 121175341 -81153006 + (CATA)n Simple_repeat Simple_repeat 2 52 0 247 223 136 75 chr4 121175428 121175578 -81152769 - L1ME4a LINE L1 -8 6113 5973 2204 106 3 0 chr4 121175578 121175885 -81152462 - AluSp SINE Alu 0 309 2 247 223 136 75 chr4 121175885 121175998 -81152349 - L1ME4a LINE L1 -148 5973 5833 303 262 14 42 chr4 121176009 121176171 -81152176 - L1ME4a LINE L1 -364 5757 5625 1942 167 0 0 chr4 121177243 121177543 -81150804 - AluJo SINE Alu -12 300 1 898 171 0 13 chr4 121177871 121178023 -81150324 - AluJb SINE Alu -10 302 153 258 242 30 15 chr4 121178035 121178101 -81150246 + MER5A DNA MER1_type 123 189 0 2130 93 3 21 chr4 121178180 121178508 -81149839 + AluSp SINE Alu 1 323 0 187 376 96 24 chr4 121179121 121179246 -81149101 + L2 LINE L2 3139 3272 0 878 321 102 64 chr4 121181545 121182574 -81145773 + L2 LINE L2 1977 3045 -227 2263 95 20 0 chr4 121182574 121182870 -81145477 + AluSc SINE Alu 1 302 -7 878 321 102 64 chr4 121182870 121183103 -81145244 + L2 LINE L2 3045 3268 -4 217 326 116 0 chr4 121183287 121183434 -81144913 + L2 LINE L2 2338 2501 -813 375 311 154 42 chr4 121183438 121184239 -81144108 + L2 LINE L2 2087 2976 -338 223 273 13 26 chr4 121185134 121185211 -81143136 - MIR SINE MIR -80 128 53 24 0 0 0 chr4 121185841 121185865 -81142482 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr4 121186709 121186736 -81141611 + (T)n Simple_repeat Simple_repeat 1 27 0 2335 81 0 0 chr4 121186844 121187156 -81141191 - AluSq SINE Alu 0 313 2 201 39 0 0 chr4 121187543 121187569 -81140778 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1928 183 58 153 chr4 121188576 121189375 -81138972 + LTR8A LTR ERV1 1 723 -4 2279 113 0 0 chr4 121189674 121189975 -81138372 + AluSx SINE Alu 1 301 -11 215 312 151 0 chr4 121190594 121190687 -81137660 - L3b LINE CR1 -262 1321 1215 278 167 56 0 chr4 121192114 121192168 -81136179 - MER116 DNA Mariner -2 78 22 2057 109 7 10 chr4 121192179 121192473 -81135874 - AluSx SINE Alu -19 293 1 225 355 107 8 chr4 121192483 121192604 -81135743 - MIR SINE MIR -108 154 22 1457 196 73 50 chr4 121192637 121192769 -81135578 + MLT1A1 LTR MaLR 1 129 -236 2150 129 0 0 chr4 121192769 121193064 -81135283 + AluSx SINE Alu 1 295 -17 1457 196 73 50 chr4 121193064 121193288 -81135059 + MLT1A1 LTR MaLR 129 365 0 990 281 91 47 chr4 121193472 121193686 -81134661 - L2 LINE L2 -15 3298 3095 1998 133 20 13 chr4 121193686 121193986 -81134361 - AluSx SINE Alu -8 304 3 990 281 91 47 chr4 121193986 121194570 -81133777 - L2 LINE L2 -218 3095 2461 23 68 0 0 chr4 121194814 121194858 -81133489 + AT_rich Low_complexity Low_complexity 1 44 0 2233 114 0 0 chr4 121195617 121195916 -81132431 - AluSq SINE Alu -14 299 1 409 121 0 0 chr4 121195955 121196021 -81132326 + Alu SINE Alu 240 305 -7 236 278 105 60 chr4 121197262 121197395 -81130952 + MIR SINE MIR 58 196 -66 465 319 7 7 chr4 121197459 121197603 -81130744 + L2 LINE L2 3168 3311 -2 258 312 88 46 chr4 121197935 121198218 -81130129 + L2 LINE L2 2750 3049 -223 1592 154 41 41 chr4 121198340 121198633 -81129714 - AluJo SINE Alu -17 295 3 21 0 0 0 chr4 121198908 121198929 -81129418 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr4 121199753 121199789 -81128558 + AT_rich Low_complexity Low_complexity 1 36 0 252 239 0 65 chr4 121200116 121200219 -81128128 - MIR SINE MIR -23 185 91 1070 79 0 0 chr4 121200574 121200713 -81127634 + MER85 DNA T2_type 1 139 0 42599 33 22 1 chr4 121201349 121207378 -81120969 - L1PA2 LINE L1 0 6155 1 2113 137 0 0 chr4 121208657 121208957 -81119390 - AluSx SINE Alu -10 302 3 24 53 0 0 chr4 121212522 121212560 -81115787 + AT_rich Low_complexity Low_complexity 1 38 0 336 94 0 0 chr4 121214596 121214649 -81113698 + (CAA)n Simple_repeat Simple_repeat 2 54 0 23 0 0 0 chr4 121216331 121216354 -81111993 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 121217076 121217097 -81111250 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 121218463 121218492 -81109855 + AT_rich Low_complexity Low_complexity 1 29 0 236 135 0 19 chr4 121219110 121219162 -81109185 + (CA)n Simple_repeat Simple_repeat 1 51 0 26 30 0 0 chr4 121219351 121219384 -81108963 + AT_rich Low_complexity Low_complexity 1 33 0 1979 107 3 60 chr4 121219462 121219779 -81108568 - AluSq SINE Alu -14 299 1 2440 65 0 0 chr4 121224787 121225081 -81103266 - AluSc SINE Alu -15 294 1 2297 81 0 3 chr4 121226343 121226638 -81101709 + AluSg SINE Alu 1 294 -16 26 30 0 0 chr4 121227406 121227439 -81100908 + AT_rich Low_complexity Low_complexity 1 33 0 323 298 11 0 chr4 121227878 121227972 -81100375 + MER117 DNA MER1_type 1 95 -102 249 273 125 0 chr4 121228646 121228734 -81099613 + MER91A DNA MER1_type 98 196 0 27 73 0 0 chr4 121229214 121229269 -81099078 + AT_rich Low_complexity Low_complexity 1 55 0 22 35 0 0 chr4 121229480 121229509 -81098838 + AT_rich Low_complexity Low_complexity 1 29 0 200 182 0 0 chr4 121231249 121231282 -81097065 + (ATG)n Simple_repeat Simple_repeat 3 35 0 495 179 51 26 chr4 121231970 121232087 -81096260 - MIR SINE MIR -45 217 98 1892 124 0 28 chr4 121232334 121232655 -81095692 + AluSx SINE Alu 1 313 0 1346 219 81 82 chr4 121232830 121232956 -81095391 - L1MC5 LINE L1 -654 7307 7182 1768 166 14 3 chr4 121232956 121233251 -81095096 + AluJo SINE Alu 1 298 -14 1346 219 81 82 chr4 121233251 121233731 -81094616 - L1MC5 LINE L1 -779 7182 6702 435 255 57 19 chr4 121233897 121234109 -81094238 + L1MC5 LINE L1 7623 7842 -119 1444 201 14 41 chr4 121235067 121235436 -81092911 + MLT1A1 LTR MaLR 1 359 -6 224 359 0 0 chr4 121235516 121235594 -81092753 + MER5B DNA MER1_type 2 79 -99 298 242 0 15 chr4 121235526 121235592 -81092755 - MER5A DNA MER1_type -12 177 113 1609 167 4 0 chr4 121235718 121236033 -81092314 + AluJb SINE Alu 18 333 0 200 57 0 29 chr4 121236052 121236087 -81092260 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1583 172 0 34 chr4 121236091 121236382 -81091965 - AluJb SINE Alu -31 281 1 2636 194 14 4 chr4 121236388 121236893 -81091454 - L1MB2 LINE L1 -48 6123 5614 184 321 0 0 chr4 121236893 121236946 -81091401 - MER5A DNA MER1_type -74 115 63 273 119 0 0 chr4 121238625 121238667 -81089680 + (TG)n Simple_repeat Simple_repeat 1 42 0 888 183 5 54 chr4 121239093 121239279 -81089068 + Tigger1 DNA MER2_type 2 178 -2240 * 2150 158 24 56 chr4 121239270 121239484 -81088863 + Tigger1 DNA MER2_type 2020 2216 -202 678 181 24 0 chr4 121239484 121239611 -81088736 - FLAM_C SINE Alu -2 131 2 2150 158 24 56 chr4 121239611 121239808 -81088539 + Tigger1 DNA MER2_type 2216 2418 0 681 170 13 26 chr4 121239969 121240122 -81088225 - L1MA7 LINE L1 -5 6286 6136 389 242 235 0 chr4 121240482 121240631 -81087716 - MIR SINE MIR -77 185 2 227 247 130 0 chr4 121241264 121241341 -81087006 - MIR SINE MIR -72 190 104 573 278 130 0 chr4 121242122 121242284 -81086063 + MER5A DNA MER1_type 6 188 -1 2138 149 6 8 chr4 121242334 121242696 -81085651 - MER46B DNA MER2_type 0 236 1 1446 205 53 42 chr4 121242721 121243013 -81085334 + MLT1A1 LTR MaLR 1 299 -66 2118 125 3 0 chr4 121243013 121243317 -81085030 + AluSx SINE Alu 1 305 -7 1446 205 53 42 chr4 121243317 121243385 -81084962 + MLT1A1 LTR MaLR 299 365 0 23 0 0 0 chr4 121246211 121246234 -81082113 + AT_rich Low_complexity Low_complexity 1 23 0 472 306 47 6 chr4 121246960 121247130 -81081217 - MIR SINE MIR -56 206 30 374 368 66 20 chr4 121247555 121247962 -81080385 + L2 LINE L2 2569 3012 -260 261 286 99 68 chr4 121252686 121252863 -81075484 + MIR SINE MIR 3 180 -64 295 295 53 0 chr4 121253358 121253453 -81074894 - MIR3 SINE MIR -5 203 104 2469 64 0 0 chr4 121254644 121254941 -81073406 + AluY SINE Alu 1 297 -14 824 148 0 15 chr4 121255596 121255731 -81072616 - FLAM_C SINE Alu 0 133 1 1967 78 0 0 chr4 121255979 121256263 -81072084 - AluY SINE Alu 0 322 39 393 301 175 15 chr4 121256653 121256859 -81071488 + MIR SINE MIR 12 250 -12 1928 133 25 0 chr4 121262404 121262683 -81065664 - AluJb SINE Alu -26 286 1 934 168 19 48 chr4 121263712 121263920 -81064427 + MER3 DNA MER1_type 4 205 -4 273 304 32 32 chr4 121264949 121265074 -81063273 - L1ME LINE L1 -444 5677 5553 667 239 138 0 chr4 121265286 121265504 -81062843 - MIR SINE MIR -2 260 13 1293 216 75 32 chr4 121267977 121268325 -81060022 + MLT1A2 LTR MaLR 10 372 -2 427 275 114 8 chr4 121268338 121268469 -81059878 - MIR SINE MIR -36 226 82 364 267 0 0 chr4 121269068 121269143 -81059204 + L2 LINE L2 3198 3272 0 661 333 110 12 chr4 121269270 121269696 -81058651 + L2 LINE L2 2498 2965 -349 311 261 0 0 chr4 121270633 121270698 -81057649 - MER2 DNA MER2_type 0 345 281 722 188 7 36 chr4 121270715 121270853 -81057494 - MER2 DNA MER2_type -211 134 1 1536 178 93 0 chr4 121270936 121271205 -81057142 + AluJb SINE Alu 2 295 -17 196 365 39 22 chr4 121273116 121273297 -81055050 - L2 LINE L2 -173 3099 2916 1688 174 21 7 chr4 121273413 121273701 -81054646 + AluJo SINE Alu 6 297 -15 2073 122 20 7 chr4 121275186 121275490 -81052857 + AluSq SINE Alu 1 308 -5 303 374 68 53 chr4 121276617 121276882 -81051465 + L2 LINE L2 2996 3264 -8 184 380 70 0 chr4 121277016 121277087 -81051260 - L2 LINE L2 0 3272 3197 2249 106 0 0 chr4 121277579 121277880 -81050467 + AluSx SINE Alu 1 301 -11 602 326 127 27 chr4 121278563 121279246 -81049101 + L2 LINE L2 2563 3309 -4 2262 110 0 0 chr4 121279368 121279678 -81048669 - AluSx SINE Alu -2 310 1 614 300 45 25 chr4 121279842 121280085 -81048262 + MIR SINE MIR 15 262 0 4470 165 45 25 chr4 121280296 121281259 -81047088 - L1MB4 LINE L1 -6 6174 5195 871 135 23 0 chr4 121281260 121281393 -81046954 - AluJo SINE Alu -176 136 1 1268 146 36 29 chr4 121281397 121281678 -81046669 - L1MB4 LINE L1 -946 5200 4918 5840 148 21 14 chr4 121282130 121283802 -81044545 + L1MA8 LINE L1 4270 5950 -341 1396 102 0 5 chr4 121283802 121283988 -81044359 + AluSq SINE Alu 1 185 -128 3052 91 7 0 chr4 121284655 121285421 -81042926 + L1PA14 LINE L1 5287 6161 0 207 161 0 0 chr4 121285453 121285484 -81042863 + (CA)n Simple_repeat Simple_repeat 2 32 0 285 351 63 30 chr4 121286304 121286575 -81041772 + L2 LINE L2 2460 2739 -575 214 366 24 0 chr4 121286657 121286739 -81041608 - MIR SINE MIR -144 118 35 802 167 0 33 chr4 121288260 121288410 -81039937 - FRAM SINE Alu -31 145 1 1101 271 74 55 chr4 121288573 121289262 -81039085 - HAL1b LINE L1 -7 1341 640 853 226 72 23 chr4 121289387 121289652 -81038695 - HAL1b LINE L1 -971 377 100 2321 164 18 37 chr4 121291562 121291996 -81036351 + MSTB LTR MaLR 1 426 0 526 314 63 21 chr4 121292803 121293042 -81035305 + MIR SINE MIR 14 262 0 1265 91 6 0 chr4 121293124 121293299 -81035048 + L1PA10 LINE L1 5993 6168 0 2279 100 10 0 chr4 121293442 121293752 -81034595 + AluSp SINE Alu 1 313 0 512 231 33 0 chr4 121294583 121294704 -81033643 - L1ME1 LINE L1 -5 6161 6037 386 338 25 35 chr4 121296420 121296621 -81031726 - L2 LINE L2 -3105 209 11 285 310 0 0 chr4 121297599 121297670 -81030677 + (CATA)n Simple_repeat Simple_repeat 2 72 0 320 120 75 30 chr4 121297847 121297980 -81030367 + (TATAG)n Simple_repeat Simple_repeat 2 140 0 487 294 236 37 chr4 121298278 121298710 -81029637 + MLT1K LTR MaLR 71 588 0 527 314 60 24 chr4 121299256 121299508 -81028839 + MIR SINE MIR 2 262 0 1740 269 71 62 chr4 121300937 121302157 -81026190 - L2 LINE L2 -15 3298 2063 183 318 30 15 chr4 121302291 121302357 -81025990 + L2 LINE L2 3247 3313 0 250 274 14 27 chr4 121302387 121302460 -81025887 - L2 LINE L2 0 3313 3242 442 285 51 29 chr4 121304137 121304274 -81024073 + L2 LINE L2 3174 3313 0 1931 132 11 7 chr4 121305064 121305364 -81022983 - AluSx SINE Alu 0 301 1 6889 169 87 37 chr4 121305376 121306147 -81022200 + L1MCa LINE L1 1 732 -5694 2499 121 54 0 chr4 121306147 121306553 -81021794 - MSTA LTR MaLR 0 428 1 6889 169 87 37 chr4 121306553 121307651 -81020696 + L1MCa LINE L1 732 2064 -4362 315 0 0 0 chr4 121307651 121307686 -81020661 + (TG)n Simple_repeat Simple_repeat 2 36 0 6889 169 87 37 chr4 121307686 121307790 -81020557 + L1MCa LINE L1 2064 2161 -4265 9956 143 20 15 chr4 121307790 121309031 -81019316 - Tigger1 DNA MER2_type -12 2406 1153 2323 81 3 0 chr4 121309031 121309327 -81019020 - AluY SINE Alu -14 297 1 9956 143 20 15 chr4 121309327 121309803 -81018544 - Tigger1 DNA MER2_type -1265 1153 681 4965 179 19 47 chr4 121359803 121360403 -80967944 + L1MC1 LINE L1 5284 5841 -492 2427 137 18 62 chr4 121360403 121360856 -80967491 - Tigger2a DNA MER2_type 0 434 2 4965 179 19 47 chr4 121360856 121361330 -80967017 + L1MC1 LINE L1 5841 6327 -6 1451 180 28 28 chr4 121361487 121361770 -80966577 - AluJo SINE Alu -18 294 12 22 80 0 0 chr4 121362196 121362246 -80966101 + AT_rich Low_complexity Low_complexity 1 50 0 1735 155 23 16 chr4 121362533 121362843 -80965504 - AluJo SINE Alu 0 312 1 1895 189 58 61 chr4 121363172 121363723 -80964624 + MER34B LTR ERV1 1 526 -16 225 0 0 0 chr4 121364046 121364071 -80964276 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 1496 39 0 49 chr4 121364071 121364275 -80964072 - L1PA3 LINE L1 -13 6142 5949 1180 15 0 0 chr4 121364275 121364410 -80963937 + L1PA3 LINE L1 5834 5968 -187 25 0 0 0 chr4 121364506 121364531 -80963816 + AT_rich Low_complexity Low_complexity 1 25 0 261 0 0 0 chr4 121364620 121364649 -80963698 + (TA)n Simple_repeat Simple_repeat 1 29 0 733 145 57 0 chr4 121364666 121364790 -80963557 + FLAM_C SINE Alu 1 131 -2 25 31 0 0 chr4 121365702 121365734 -80962613 + AT_rich Low_complexity Low_complexity 1 32 0 1145 226 89 54 chr4 121365798 121366316 -80962031 + MER34 LTR ERV1 2 537 -5 3853 194 96 35 chr4 121366571 121367035 -80961312 + L1MDa LINE L1 850 1284 -5256 2156 62 3 84 chr4 121367035 121367356 -80960991 + AluSg SINE Alu 1 295 -15 3853 194 96 35 chr4 121367356 121368062 -80960285 + L1MDa LINE L1 1284 2091 -4449 965 309 77 35 chr4 121368214 121368241 -80960106 + MLT1L LTR MaLR 1 25 -590 1769 169 100 26 chr4 121368241 121368660 -80959687 + LTR7 LTR ERV1 1 450 0 965 309 77 35 chr4 121368660 121369149 -80959198 + MLT1L LTR MaLR 25 539 -76 588 292 16 52 chr4 121369190 121369517 -80958830 - L1ME LINE L1 -318 5803 5497 235 321 12 12 chr4 121370429 121370510 -80957837 + L2 LINE L2 2543 2623 -691 1035 157 11 0 chr4 121370896 121371081 -80957266 - L1PA13 LINE L1 0 6163 5977 281 26 26 0 chr4 121371887 121371925 -80956422 + (CA)n Simple_repeat Simple_repeat 2 40 0 207 69 0 0 chr4 121372817 121372846 -80955501 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 218 342 42 25 chr4 121374058 121374178 -80954169 - MIR SINE MIR -122 140 19 195 69 0 0 chr4 121374730 121374759 -80953588 + (GA)n Simple_repeat Simple_repeat 1 29 0 35 24 0 0 chr4 121375039 121375081 -80953266 + AT_rich Low_complexity Low_complexity 1 42 0 270 286 0 12 chr4 121375182 121375266 -80953081 + MLT1F LTR MaLR 20 102 -440 371 267 80 20 chr4 121375459 121375609 -80952738 + MLT1H LTR MaLR 383 541 -8 32 43 0 0 chr4 121376103 121376149 -80952198 + AT_rich Low_complexity Low_complexity 1 46 0 1928 158 16 0 chr4 121378032 121378335 -80950012 + AluSx SINE Alu 1 308 -4 610 196 23 30 chr4 121378511 121378644 -80949703 - FLAM_A SINE Alu -1 132 1 406 310 11 32 chr4 121378655 121378755 -80949592 - MER112 DNA MER1_type -77 183 87 224 77 26 0 chr4 121378755 121378794 -80949553 + (CA)n Simple_repeat Simple_repeat 1 40 0 406 310 11 32 chr4 121378794 121378880 -80949467 - MER112 DNA MER1_type -173 87 1 1714 237 125 34 chr4 121379871 121380542 -80947805 + L2 LINE L2 2307 3041 -272 511 241 72 18 chr4 121380548 121380714 -80947633 + MER58B DNA MER1_type 167 341 0 647 309 63 65 chr4 121380714 121381193 -80947154 - L2 LINE L2 -2542 772 295 2261 104 0 0 chr4 121381358 121381646 -80946701 - AluSc SINE Alu -15 294 7 21 104 0 0 chr4 121381659 121381736 -80946611 + AT_rich Low_complexity Low_complexity 1 77 0 1094 172 49 5 chr4 121381781 121381985 -80946362 - AluJo SINE Alu -16 296 84 189 270 0 63 chr4 121382530 121382593 -80945754 - L2 LINE L2 -52 3261 3203 180 312 144 24 chr4 121382954 121383079 -80945268 + L2 LINE L2 2619 2758 -556 322 185 141 33 chr4 121383110 121383202 -80945145 + MER94 DNA DNA 5 106 -28 1517 201 21 11 chr4 121383329 121383613 -80944734 + AluJo SINE Alu 1 287 -25 437 252 65 0 chr4 121383633 121383772 -80944575 + LTR37B LTR ERV1 15 162 -306 409 253 44 10 chr4 121383779 121383931 -80944416 + MER58 DNA MER1_type 1 2420 0 416 256 54 18 chr4 121383953 121384121 -80944226 + LTR37B LTR ERV1 212 385 -83 27 62 0 0 chr4 121384137 121384185 -80944162 + AT_rich Low_complexity Low_complexity 1 48 0 243 79 0 0 chr4 121384230 121384268 -80944079 + (CA)n Simple_repeat Simple_repeat 2 39 0 1457 168 104 16 chr4 121384274 121384583 -80943764 - MER7A DNA MER2_type -4 342 9 225 0 0 0 chr4 121384585 121384610 -80943737 + (TG)n Simple_repeat Simple_repeat 2 26 0 255 299 0 0 chr4 121384637 121384714 -80943633 - L1MC/D LINE L1 -2016 5792 5716 1027 293 62 39 chr4 121386050 121386714 -80941633 - L2 LINE L2 -2 3311 2635 985 138 0 0 chr4 121386736 121386874 -80941473 + AluSg/x SINE Alu 157 294 -16 520 260 195 9 chr4 121386876 121387107 -80941240 - L2 LINE L2 -705 2609 2336 192 304 101 36 chr4 121387446 121387584 -80940763 + MIR3 SINE MIR 15 161 -47 3000 201 23 30 chr4 121388163 121388821 -80939526 + MER82 DNA MER2_type 1 653 0 22 0 0 0 chr4 121389879 121389901 -80938446 + AT_rich Low_complexity Low_complexity 1 22 0 392 236 0 121 chr4 121390249 121390414 -80937933 + MER112 DNA MER1_type 4 148 -112 306 303 90 119 chr4 121391298 121391777 -80936570 - LTR67 LTR ERVL -62 495 31 189 349 48 0 chr4 121391849 121391912 -80936435 - L3b LINE CR1 -4 1579 1514 767 125 0 66 chr4 121392087 121392223 -80936124 + FLAM_C SINE Alu 11 137 -6 2049 118 14 0 chr4 121393064 121393369 -80934978 - AluSq SINE Alu 0 309 1 228 182 0 127 chr4 121393386 121393441 -80934906 + Alu SINE Alu 233 280 -22 373 318 91 32 chr4 121394532 121394752 -80933595 + MIR SINE MIR 29 261 -1 289 325 18 9 chr4 121395531 121395645 -80932702 - L2 LINE L2 -4 3309 3195 212 238 163 12 chr4 121396249 121396329 -80932018 - MIR SINE MIR -39 223 132 1403 298 72 19 chr4 121396816 121397343 -80931004 + L2 LINE L2 2205 2759 -555 1660 197 35 40 chr4 121397348 121397719 -80930628 - MLT1A2 LTR MaLR -5 369 1 490 316 26 32 chr4 121397933 121398123 -80930224 + L2 LINE L2 3125 3313 0 25 31 0 0 chr4 121398701 121398733 -80929614 + AT_rich Low_complexity Low_complexity 1 32 0 213 39 0 0 chr4 121399110 121399136 -80929211 + (TG)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr4 121399781 121399804 -80928543 + AT_rich Low_complexity Low_complexity 1 23 0 1831 150 10 32 chr4 121399812 121400126 -80928221 + AluJo SINE Alu 6 312 0 233 344 0 0 chr4 121400304 121400394 -80927953 - MER91A DNA MER1_type 0 196 107 206 323 227 25 chr4 121400516 121401151 -80927196 - L2 LINE L2 -338 2976 2214 207 351 0 0 chr4 121401312 121401369 -80926978 - L2 LINE L2 -79 3193 3137 220 264 127 27 chr4 121401416 121401526 -80926821 - L2 LINE L2 -1319 1995 1875 270 402 17 0 chr4 121402081 121402198 -80926149 + MIR SINE MIR 19 137 -125 2257 88 3 19 chr4 121402573 121402881 -80925466 + AluSp SINE Alu 2 304 -9 198 103 0 0 chr4 121403566 121403595 -80924752 + (T)n Simple_repeat Simple_repeat 1 29 0 315 213 39 126 chr4 121403653 121403780 -80924567 - MSTB2 LTR MaLR -341 116 1 942 227 154 13 chr4 121405764 121405856 -80922491 + MER58B DNA MER1_type 1 79 -2341 2449 78 0 0 chr4 121405856 121406162 -80922185 - AluY SINE Alu -5 306 1 942 227 154 13 chr4 121406162 121406368 -80921979 + MER58B DNA MER1_type 79 341 0 778 295 116 30 chr4 121407113 121407682 -80920665 - L2 LINE L2 -1 3312 2709 270 241 17 0 chr4 121407683 121407741 -80920606 + L2 LINE L2 2680 2738 -576 870 173 79 89 chr4 121408337 121408551 -80919796 - MER20 DNA MER1_type -2 217 6 23 33 0 0 chr4 121409097 121409127 -80919220 + AT_rich Low_complexity Low_complexity 1 30 0 187 331 44 44 chr4 121409775 121409911 -80918436 + L2 LINE L2 2339 2474 -840 2189 104 0 14 chr4 121410646 121410943 -80917404 + AluSx SINE Alu 1 293 -19 2337 90 3 3 chr4 121411084 121411383 -80916964 + AluSg SINE Alu 1 299 -11 25 51 0 0 chr4 121412864 121412903 -80915444 + AT_rich Low_complexity Low_complexity 1 39 0 792 319 40 9 chr4 121412950 121413176 -80915171 + MIR SINE MIR 2 234 -28 284 308 106 10 chr4 121414991 121415095 -80913252 + MIR3 SINE MIR 84 197 -11 371 307 180 14 chr4 121417359 121417666 -80910681 + L2 LINE L2 2709 3068 -245 1578 205 92 13 chr4 121417670 121418080 -80910267 + MER31B LTR ERV1 1 661 0 402 267 115 47 chr4 121418107 121418298 -80910049 + L2 LINE L2 3104 3307 -6 251 159 58 14 chr4 121418428 121418497 -80909850 + L1ME4a LINE L1 6047 6118 -3 721 279 110 38 chr4 121419151 121419542 -80908805 + L2 LINE L2 2834 3252 -61 192 40 0 0 chr4 121420052 121420077 -80908270 + (CAAAC)n Simple_repeat Simple_repeat 1 25 0 2164 157 10 23 chr4 121420202 121420597 -80907750 + MLT1B LTR MaLR 1 390 0 1591 188 28 3 chr4 121421249 121421537 -80906810 - AluJo SINE Alu -17 295 1 2494 43 3 7 chr4 121421637 121421941 -80906406 - AluY SINE Alu -8 303 1 21 36 0 0 chr4 121422226 121422254 -80906093 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr4 121422503 121422550 -80905797 + AT_rich Low_complexity Low_complexity 1 47 0 235 209 0 45 chr4 121422626 121422693 -80905654 + A-rich Low_complexity Low_complexity 2 65 0 748 212 29 106 chr4 121423481 121423726 -80904621 - Charlie1a DNA MER1_type -1228 227 2 1796 156 0 11 chr4 121424150 121424433 -80903914 + AluSx SINE Alu 1 280 -32 291 28 0 0 chr4 121424433 121424469 -80903878 + (TAA)n Simple_repeat Simple_repeat 1 36 0 27 81 0 0 chr4 121424554 121424616 -80903731 + AT_rich Low_complexity Low_complexity 1 62 0 2255 135 8 42 chr4 121424696 121425097 -80903250 + MLT1B LTR MaLR 4 390 0 2123 211 108 20 chr4 121425102 121425647 -80902700 - MLT1E LTR MaLR 0 593 1 2253 114 0 0 chr4 121425652 121425950 -80902397 - AluSq SINE Alu -15 298 1 303 191 0 0 chr4 121427415 121427478 -80900869 + (CA)n Simple_repeat Simple_repeat 2 64 0 307 232 0 29 chr4 121428085 121428154 -80900193 + L2 LINE L2 3206 3272 0 255 228 160 42 chr4 121429149 121429279 -80899068 + MIR SINE MIR 20 161 -86 26 50 0 0 chr4 121429399 121429439 -80898908 + AT_rich Low_complexity Low_complexity 1 40 0 26 50 0 0 chr4 121430082 121430122 -80898225 + AT_rich Low_complexity Low_complexity 1 40 0 201 39 0 0 chr4 121430503 121430529 -80897818 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 1998 119 0 11 chr4 121430845 121431170 -80897177 + AluSg SINE Alu 1 322 0 24 67 0 0 chr4 121431292 121431337 -80897010 + AT_rich Low_complexity Low_complexity 1 45 0 1452 75 0 45 chr4 121431592 121431791 -80896556 + AluY SINE Alu 109 298 -13 1764 254 74 19 chr4 121432206 121432690 -80895657 + MER69 DNA AcHobo 14 524 -702 612 170 85 12 chr4 121432680 121432845 -80895502 + MER69 DNA AcHobo 2315 2491 -35 * 181 0 0 65 chr4 121433518 121433549 -80894798 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 251 137 0 0 chr4 121433711 121433762 -80894585 + L1MA4 LINE L1 6246 6296 -4 23 33 0 0 chr4 121434841 121434871 -80893476 + AT_rich Low_complexity Low_complexity 1 30 0 296 211 40 0 chr4 121436098 121436174 -80892173 - L1ME4a LINE L1 -97 6024 5946 505 328 97 16 chr4 121437031 121437351 -80890996 + L2 LINE L2 675 1020 -2294 2285 165 103 15 chr4 121437419 121437893 -80890454 + MER34 LTR ERV1 27 542 0 326 347 32 98 chr4 121437903 121438272 -80890075 + L2 LINE L2 2924 3268 -4 240 228 18 0 chr4 121439122 121439179 -80889168 + MIR SINE MIR 83 140 -122 1275 111 63 36 chr4 121439330 121439583 -80888764 - L1MA5 LINE L1 -6 6294 6035 863 193 69 55 chr4 121439653 121439927 -80888420 - L1ME3A LINE L1 -12 6158 5881 256 210 0 81 chr4 121440916 121440978 -80887369 - FLAM SINE Alu -1 132 76 250 218 63 4 chr4 121441476 121441562 -80886785 - MIR SINE MIR -38 170 81 2650 98 25 0 chr4 121442041 121442407 -80885940 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr4 121443069 121443097 -80885250 + AT_rich Low_complexity Low_complexity 1 28 0 40 73 0 0 chr4 121443134 121443216 -80885131 + AT_rich Low_complexity Low_complexity 1 82 0 23 0 0 0 chr4 121443227 121443250 -80885097 + AT_rich Low_complexity Low_complexity 1 23 0 296 378 14 14 chr4 121444411 121444559 -80883788 - L2 LINE L2 -234 3038 2891 1017 235 70 12 chr4 121444713 121444956 -80883391 + MIR SINE MIR 2 258 -4 2094 122 3 7 chr4 121446083 121446386 -80881961 - AluJb SINE Alu -10 302 1 2181 112 7 3 chr4 121446628 121446923 -80881424 + AluSx SINE Alu 1 296 -16 285 29 0 0 chr4 121447708 121447742 -80880605 + (CA)n Simple_repeat Simple_repeat 2 35 0 22 56 0 0 chr4 121447754 121447790 -80880557 + AT_rich Low_complexity Low_complexity 1 36 0 213 329 66 18 chr4 121449337 121449504 -80878843 + L2 LINE L2 2232 2406 -908 216 167 0 0 chr4 121449757 121449805 -80878542 + A-rich Low_complexity Low_complexity 1 48 0 2291 76 0 10 chr4 121449809 121450100 -80878247 + AluSc SINE Alu 1 288 -21 617 321 79 74 chr4 121450302 121450816 -80877531 + L2 LINE L2 2792 3304 -9 22 35 0 0 chr4 121451379 121451408 -80876939 + AT_rich Low_complexity Low_complexity 1 29 0 2149 125 7 0 chr4 121452321 121452626 -80875721 + AluSx SINE Alu 5 311 -1 565 155 6 39 chr4 121453310 121453491 -80874856 + (CATA)n Simple_repeat Simple_repeat 2 176 0 315 274 0 42 chr4 121453496 121453591 -80874756 - L1MC4 LINE L1 -1339 6703 6613 204 40 0 0 chr4 121453638 121453663 -80874684 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 2539 264 62 13 chr4 121456133 121457018 -80871329 + L2 LINE L2 2186 3125 -188 453 97 0 0 chr4 121457018 121457090 -80871257 + (CA)n Simple_repeat Simple_repeat 2 73 0 2539 264 62 13 chr4 121457090 121457276 -80871071 + L2 LINE L2 3125 3301 -12 778 242 106 4 chr4 121457512 121457739 -80870608 - MIR SINE MIR 0 262 13 180 152 0 0 chr4 121458324 121458357 -80869990 + L2 LINE L2 3280 3312 -1 2019 142 45 11 chr4 121458797 121459150 -80869197 - MER47A DNA MER2_type 0 366 2 598 254 6 29 chr4 121459196 121459369 -80868978 + MIR SINE MIR 90 258 -4 27 29 0 0 chr4 121459413 121459447 -80868900 + AT_rich Low_complexity Low_complexity 1 34 0 279 260 49 32 chr4 121459778 121459901 -80868446 - L1ME LINE L1 -441 5680 5556 869 281 36 51 chr4 121462196 121462531 -80865816 - LTR16A LTR ERVL -2 448 119 1588 181 35 3 chr4 121462560 121462847 -80865500 - AluJb SINE Alu -16 296 1 789 207 124 10 chr4 121463102 121463295 -80865052 - MER58C DNA MER1_type 0 215 1 1034 195 70 32 chr4 121463338 121463473 -80864874 - MER33 DNA MER1_type -2283 302 174 1638 181 36 4 chr4 121463473 121463750 -80864597 + AluSx SINE Alu 1 286 -26 1034 195 70 32 chr4 121463750 121463915 -80864432 - MER33 DNA MER1_type -2411 174 1 184 358 51 58 chr4 121463941 121464078 -80864269 - L2 LINE L2 0 3272 3137 1418 187 50 21 chr4 121464176 121464459 -80863888 - AluJo SINE Alu -21 291 1 21 0 0 0 chr4 121464770 121464791 -80863556 + AT_rich Low_complexity Low_complexity 1 21 0 1911 80 83 35 chr4 121465906 121466195 -80862152 + AluY SINE Alu 1 303 -8 376 203 0 0 chr4 121466414 121466499 -80861848 + L1MD3 LINE L1 7690 7986 -9 727 245 103 12 chr4 121468107 121468360 -80859987 + L3b LINE CR1 1102 1377 -206 318 279 45 67 chr4 121468606 121468785 -80859562 + MIR SINE MIR 82 256 -6 2080 122 17 0 chr4 121469573 121469868 -80858479 - AluSx SINE Alu -12 300 1 324 0 0 0 chr4 121470593 121470629 -80857718 + (TA)n Simple_repeat Simple_repeat 2 37 0 210 168 20 69 chr4 121471968 121472069 -80856278 + (TTATA)n Simple_repeat Simple_repeat 2 97 0 23 0 0 0 chr4 121472698 121472721 -80855626 + AT_rich Low_complexity Low_complexity 1 23 0 342 334 62 36 chr4 121473789 121474239 -80854108 - L1ME2 LINE L1 -216 5948 5484 225 169 48 78 chr4 121474247 121474413 -80853934 + (TATAA)n Simple_repeat Simple_repeat 3 163 0 287 271 62 52 chr4 121474428 121474638 -80853709 - L1ME2 LINE L1 -694 5468 5257 546 272 103 99 chr4 121474758 121475272 -80853075 - L1ME2 LINE L1 -984 5162 4647 1395 201 72 13 chr4 121475284 121475747 -80852600 + MER34 LTR ERV1 1 542 0 365 259 138 30 chr4 121475762 121476059 -80852288 - L1ME2 LINE L1 -1530 4616 4288 242 285 105 12 chr4 121476150 121476322 -80852025 - L1ME2 LINE L1 -2049 4097 3910 362 263 51 45 chr4 121476462 121476618 -80851729 - MER103 DNA DNA -2 164 8 2124 125 3 3 chr4 121477214 121477517 -80850830 + AluSx SINE Alu 1 303 -9 240 132 38 57 chr4 121478379 121478432 -80849915 + L1PA15-16 LINE L1 2596 2647 -4202 3507 141 9 125 chr4 121478906 121479688 -80848659 - LTR8 LTR ERV1 0 691 1 1267 155 77 14 chr4 121480005 121480405 -80847942 + LTR54B LTR ERV1 1 496 -2 255 31 0 0 chr4 121481213 121481245 -80847102 + (CA)n Simple_repeat Simple_repeat 1 32 0 350 331 43 22 chr4 121482277 121482416 -80845931 + MIR3 SINE MIR 33 174 -34 339 196 96 128 chr4 121482789 121483008 -80845339 + LTR48 LTR ERV1 576 787 0 270 250 92 17 chr4 121483843 121483963 -80844384 + MIR SINE MIR 87 215 -47 2138 121 3 0 chr4 121484072 121484370 -80843977 - AluSx SINE Alu -13 299 1 324 328 58 35 chr4 121484751 121484922 -80843425 - L1ME2 LINE L1 -2191 3955 3781 246 281 16 74 chr4 121485327 121485448 -80842899 - L2 LINE L2 0 3313 3200 320 305 9 0 chr4 121486925 121487030 -80841317 - MIR SINE MIR -14 248 143 1811 153 27 10 chr4 121487221 121487397 -80840950 - AluJo SINE Alu -6 306 121 279 0 0 0 chr4 121487397 121487428 -80840919 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1811 153 27 10 chr4 121487428 121487552 -80840795 - AluJo SINE Alu -191 121 1 3131 214 103 26 chr4 121487939 121489470 -80838877 + L1ME2 LINE L1 4497 6155 -9 602 325 15 5 chr4 121489490 121489693 -80838654 + MIR SINE MIR 18 222 -40 699 333 62 26 chr4 121489971 121490444 -80837903 + L2 LINE L2 2574 3068 -245 2153 182 0 3 chr4 121490504 121490861 -80837486 + MLT1A1 LTR MaLR 10 365 0 345 202 163 70 chr4 121490894 121491023 -80837324 + L2 LINE L2 3173 3313 0 2268 87 3 3 chr4 121492432 121492730 -80835617 - AluSg SINE Alu -12 298 1 236 337 53 0 chr4 121492833 121492928 -80835419 + MIR3 SINE MIR 55 154 -54 1899 151 3 7 chr4 121492967 121493265 -80835082 - AluJo SINE Alu -11 301 5 1617 148 12 77 chr4 121496016 121496340 -80832007 + AluJb SINE Alu 1 303 -9 2263 187 27 2 chr4 121498069 121498519 -80829828 + L1MB3 LINE L1 5722 6182 -1 22 35 0 0 chr4 121499745 121499774 -80828573 + AT_rich Low_complexity Low_complexity 1 29 0 1076 142 6 0 chr4 121500638 121500807 -80827540 - L1PA16 LINE L1 -5 6161 5992 1951 163 65 26 chr4 121500988 121501374 -80826973 + L1MB8 LINE L1 5631 6031 -147 195 313 50 0 chr4 121501379 121501459 -80826888 + L2 LINE L2 2329 2412 -902 270 194 281 0 chr4 121501536 121501675 -80826672 + L2 LINE L2 2456 2633 -681 3142 174 41 77 chr4 121501677 121502435 -80825912 + MER44D DNA MER2_type 2 604 -1 803 292 213 14 chr4 121502440 121503015 -80825332 + L2 LINE L2 2640 3313 0 198 378 20 31 chr4 121504035 121504133 -80824214 + MIR SINE MIR 6 102 -160 2123 96 3 7 chr4 121504693 121504986 -80823361 - AluY SINE Alu -19 292 1 227 287 99 40 chr4 121505061 121505162 -80823185 - L2 LINE L2 -1 3271 3165 288 357 49 17 chr4 121505164 121505511 -80822836 + L2 LINE L2 1884 2241 -1073 347 274 162 8 chr4 121505533 121505650 -80822697 - MIR SINE MIR -112 150 16 24 0 0 0 chr4 121507817 121507841 -80820506 + AT_rich Low_complexity Low_complexity 1 24 0 279 385 46 28 chr4 121508915 121509133 -80819214 + L2 LINE L2 3016 3237 -35 293 288 120 33 chr4 121509272 121509546 -80818801 + L1ME4a LINE L1 5605 5902 -219 23 68 0 0 chr4 121509677 121509721 -80818626 + AT_rich Low_complexity Low_complexity 1 44 0 24 0 0 0 chr4 121510009 121510033 -80818314 + AT_rich Low_complexity Low_complexity 1 24 0 240 259 52 0 chr4 121510841 121510899 -80817448 - L2 LINE L2 -1 3271 3211 1364 192 7 42 chr4 121511571 121511879 -80816468 + AluJo SINE Alu 1 297 -15 2253 103 0 13 chr4 121512336 121512647 -80815700 + AluSg SINE Alu 1 307 -3 33 43 0 0 chr4 121513058 121513105 -80815242 + AT_rich Low_complexity Low_complexity 1 47 0 308 317 137 35 chr4 121513894 121514121 -80814226 + MIR SINE MIR 11 260 -2 23 33 0 0 chr4 121514121 121514151 -80814196 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 121514487 121514515 -80813832 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 121514869 121514890 -80813457 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr4 121516020 121516055 -80812292 + (CA)n Simple_repeat Simple_repeat 2 36 0 319 298 78 35 chr4 121517875 121518016 -80810331 - MIR SINE MIR -68 194 48 875 225 55 47 chr4 121518105 121518358 -80809989 - MIR SINE MIR 0 262 8 212 367 10 0 chr4 121518384 121518482 -80809865 - MIR3 SINE MIR -97 111 13 23 33 0 0 chr4 121520298 121520328 -80808019 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 121520850 121520878 -80807469 + AT_rich Low_complexity Low_complexity 1 28 0 351 179 120 128 chr4 121522585 121522702 -80805645 + L1MDb LINE L1 597 712 -5697 2135 104 3 13 chr4 121524872 121525170 -80803177 + AluSq SINE Alu 1 295 -18 635 236 45 20 chr4 121525385 121525584 -80802763 - MER31A LTR ERV1 -3 482 279 193 242 137 32 chr4 121526406 121526501 -80801846 + L2 LINE L2 3149 3253 -19 25 31 0 0 chr4 121526504 121526536 -80801811 + AT_rich Low_complexity Low_complexity 1 32 0 298 309 0 0 chr4 121526918 121526999 -80801348 - LTR16A1 LTR ERVL 0 457 377 1358 163 54 75 chr4 121527010 121527449 -80800898 - MER31A LTR ERV1 0 485 1 272 254 131 15 chr4 121527493 121527623 -80800724 - LTR16A1 LTR ERVL -131 326 182 396 302 116 0 chr4 121527876 121528048 -80800299 + L2 LINE L2 2222 2413 -901 235 321 0 0 chr4 121528095 121528148 -80800199 + L2 LINE L2 2561 2613 -701 429 352 92 11 chr4 121528319 121528592 -80799755 + L2 LINE L2 2520 2814 -500 322 262 26 112 chr4 121528640 121528777 -80799570 - L1M4 LINE L1 -1160 4986 4882 1826 146 37 7 chr4 121528777 121529072 -80799275 - AluSx SINE Alu -8 304 1 322 262 26 112 chr4 121529072 121529201 -80799146 - L1M4 LINE L1 -1264 4882 4743 1973 102 25 4 chr4 121529474 121529768 -80798579 - AluSx SINE Alu 0 302 3 620 281 104 25 chr4 121530036 121530348 -80797999 + MLT1J1 LTR MaLR 104 397 -12 21 0 0 0 chr4 121530571 121530592 -80797755 + AT_rich Low_complexity Low_complexity 1 21 0 288 0 0 0 chr4 121531024 121531056 -80797291 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 78 0 0 chr4 121531271 121531322 -80797025 + AT_rich Low_complexity Low_complexity 1 51 0 33 73 0 0 chr4 121531629 121531697 -80796650 + AT_rich Low_complexity Low_complexity 1 68 0 378 308 71 22 chr4 121531913 121532095 -80796252 + MER110 LTR ERV1 215 405 -86 1552 164 16 39 chr4 121532415 121532725 -80795622 - AluJo SINE Alu -9 303 1 2047 106 0 4 chr4 121532736 121533009 -80795338 - AluY SINE Alu -9 302 31 1988 167 70 68 chr4 121533009 121533609 -80794738 + pTR5 LTR ERV1 743 1343 -1095 3854 146 153 0 chr4 121533625 121534338 -80794009 + LTR12 LTR ERV1 5 826 0 247 321 60 0 chr4 121534582 121534666 -80793681 - MIR SINE MIR -82 180 92 418 268 174 7 chr4 121534759 121534897 -80793450 - MIR SINE MIR -89 173 13 1214 127 0 0 chr4 121535451 121535617 -80792730 - AluSg/x SINE Alu -13 299 134 888 247 56 36 chr4 121535971 121536222 -80792125 - MER21B LTR ERV1 -142 721 466 1469 236 64 41 chr4 121536385 121536821 -80791526 - MER21B LTR ERV1 -402 461 16 2569 136 5 8 chr4 121537562 121537959 -80790388 + MER61B LTR ERV1 1 396 -29 415 304 128 0 chr4 121539506 121539654 -80788693 + MER91A DNA MER1_type 26 192 -4 1819 176 13 3 chr4 121539870 121540176 -80788171 - AluJb SINE Alu -1 311 3 724 159 20 104 chr4 121540473 121540674 -80787673 + MER53 DNA DNA 2 185 -4 1876 134 38 51 chr4 121540717 121541215 -80787132 + MER34B LTR ERV1 1 546 -19 29 0 0 0 chr4 121542277 121542306 -80786041 + AT_rich Low_complexity Low_complexity 1 29 0 452 228 49 0 chr4 121542996 121543119 -80785228 - MIR SINE MIR -11 251 123 1475 310 91 51 chr4 121543883 121544045 -80784302 - L2 LINE L2 -2106 1208 1054 1463 216 3 3 chr4 121544045 121544327 -80784020 + AluJo SINE Alu 1 282 -30 1475 310 91 51 chr4 121544327 121544925 -80783422 - L2 LINE L2 -2260 1054 404 2297 97 0 7 chr4 121544925 121545233 -80783114 + AluSg SINE Alu 1 306 -4 1475 310 91 51 chr4 121545233 121545358 -80782989 - L2 LINE L2 -2910 404 286 2356 91 6 6 chr4 121646336 121646666 -80681681 + L1PA10 LINE L1 5829 6158 -10 25 31 0 0 chr4 121646793 121646825 -80681522 + AT_rich Low_complexity Low_complexity 1 32 0 205 347 77 77 chr4 121647617 121647980 -80680367 + L2 LINE L2 2896 3258 -14 222 118 0 0 chr4 121647982 121648016 -80680331 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 269 368 7 35 chr4 121648036 121648180 -80680167 + MIR3 SINE MIR 3 142 -66 21 82 0 0 chr4 121648263 121648312 -80680035 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr4 121648455 121648477 -80679870 + AT_rich Low_complexity Low_complexity 1 22 0 271 348 82 17 chr4 121648904 121649137 -80679210 + L2 LINE L2 2611 2858 -456 413 311 101 40 chr4 121649561 121649789 -80678558 - L2 LINE L2 -2778 536 295 1019 191 10 10 chr4 121649789 121649988 -80678359 + AluJo SINE Alu 78 276 -36 216 0 0 0 chr4 121650204 121650228 -80678119 + (T)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr4 121651471 121651494 -80676853 + AT_rich Low_complexity Low_complexity 1 23 0 2031 160 0 0 chr4 121651536 121651848 -80676499 - AluJb SINE Alu 0 312 1 25 51 0 0 chr4 121652047 121652086 -80676261 + AT_rich Low_complexity Low_complexity 1 39 0 254 277 69 50 chr4 121652092 121652193 -80676154 - MIR SINE MIR -114 148 46 5940 163 39 36 chr4 121652446 121652653 -80675694 + LTR35-int LTR ERV1 4104 4309 -1637 2338 106 0 0 chr4 121652653 121652955 -80675392 - AluSq SINE Alu -11 302 1 5940 163 39 36 chr4 121652955 121654039 -80674308 + LTR35-int LTR ERV1 4309 5398 -548 393 151 75 110 chr4 121654182 121654328 -80674019 + LTR35-int LTR ERV1 5914 6054 -277 27 0 0 0 chr4 121654454 121654481 -80673866 + AT_rich Low_complexity Low_complexity 1 27 0 3106 189 24 21 chr4 121654743 121655358 -80672989 + LTR35 LTR ERV1 1 617 -1 472 293 53 0 chr4 121655449 121655599 -80672748 + MIR SINE MIR 97 254 -8 2452 87 0 3 chr4 121655832 121656143 -80672204 + AluSx SINE Alu 1 310 -2 27 62 0 0 chr4 121656186 121656234 -80672113 + AT_rich Low_complexity Low_complexity 1 48 0 23701 69 8 8 chr4 121656348 121660672 -80667675 - HERVL-A1 LTR ERVL -1316 4338 1 2274 84 108 6 chr4 121660672 121661015 -80667332 - MLT2A1 LTR ERVL 0 444 67 4749 21 0 4 chr4 121661200 121661757 -80666590 + L1PA2 LINE L1 5597 6151 -4 25 31 0 0 chr4 121662298 121662330 -80666017 + AT_rich Low_complexity Low_complexity 1 32 0 8623 206 17 31 chr4 121662513 121664636 -80663711 + L1MA5 LINE L1 2224 4316 -1830 2553 168 62 62 chr4 121664634 121665401 -80662946 + L1MA5 LINE L1 5451 6296 -4 * 208 294 0 29 chr4 121665905 121665973 -80662374 - L2 LINE L2 -2 3311 3246 294 317 20 10 chr4 121666648 121666749 -80661598 + L2 LINE L2 3188 3289 -24 21 36 0 0 chr4 121667186 121667214 -80661133 + AT_rich Low_complexity Low_complexity 1 28 0 8743 120 6 36 chr4 121667931 121669482 -80658865 + L1P4 LINE L1 3961 5460 -708 7286 31 13 47 chr4 121669482 121670530 -80657817 - L1PA3 LINE L1 -2 6153 5116 8743 120 6 36 chr4 121670530 121670577 -80657770 + L1P4 LINE L1 5460 5507 -661 1315 150 52 38 chr4 121670728 121670995 -80657352 - MER57-int LTR ERV1 -1994 4269 3999 424 245 43 7 chr4 121670989 121671128 -80657219 - MER57-int LTR ERV1 -4613 1985 1842 * 4780 201 66 78 chr4 121671211 121671825 -80656522 - MER57-int LTR ERV1 -4244 3293 2673 190 0 67 0 chr4 121671825 121671855 -80656492 + (TA)n Simple_repeat Simple_repeat 2 33 0 4780 201 66 78 chr4 121671855 121672778 -80655569 - MER57-int LTR ERV1 -4864 2673 767 3060 165 22 53 chr4 121672747 121673550 -80654797 - MER57-int LTR ERV1 -4450 1496 331 * 427 273 59 115 chr4 121673840 121674093 -80654254 - MER57-int LTR ERV1 -5300 1294 408 3156 155 9 36 chr4 121674107 121674668 -80653679 - LTR35 LTR ERV1 0 618 73 2199 203 81 93 chr4 121675308 121676096 -80652251 + MER4E LTR ERV1 1 779 0 2231 23 0 0 chr4 121676374 121676687 -80651660 + L1PA2 LINE L1 5895 6207 0 1615 152 158 15 chr4 121676757 121677085 -80651262 - THE1C LTR MaLR 0 375 1 352 231 185 23 chr4 121677085 121677201 -80651146 - MLT1H LTR MaLR -412 137 1 22 0 0 0 chr4 121677486 121677508 -80650839 + AT_rich Low_complexity Low_complexity 1 22 0 422 301 103 34 chr4 121677658 121677793 -80650554 - L1ME LINE L1 -543 5578 5454 2109 129 0 23 chr4 121677793 121678102 -80650245 - AluSx SINE Alu -8 304 3 422 301 103 34 chr4 121678102 121678258 -80650089 - L1ME LINE L1 -667 5454 5267 198 0 0 0 chr4 121678996 121679018 -80649329 + (A)n Simple_repeat Simple_repeat 1 22 0 184 402 72 0 chr4 121679018 121679212 -80649135 + L2 LINE L2 102 309 -3005 1205 171 9 14 chr4 121679216 121679433 -80648914 - AluJo SINE Alu -19 293 78 1786 317 148 26 chr4 121679433 121680526 -80647821 + L2 LINE L2 295 1520 -1794 2738 250 44 40 chr4 121680530 121681861 -80646486 + L1ME3A LINE L1 4672 5998 -172 349 302 65 14 chr4 121682330 121682469 -80645878 + MIR SINE MIR 107 252 -10 343 311 81 27 chr4 121682510 121682658 -80645689 + MER5A DNA MER1_type 33 188 -1 895 78 78 0 chr4 121683110 121683238 -80645109 - MER85 DNA T2_type -1 138 1 194 0 39 0 chr4 121685008 121685034 -80643313 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 206 244 22 0 chr4 121687400 121687445 -80640902 - L2 LINE L2 -4 3309 3264 1058 214 132 36 chr4 121688051 121688354 -80639993 + MER2 DNA MER2_type 14 345 0 191 358 158 0 chr4 121688421 121688541 -80639806 - L2 LINE L2 0 3272 3134 2738 99 0 0 chr4 121691023 121691386 -80636961 + THE1B LTR MaLR 2 364 0 2776 121 75 3 chr4 121691386 121691986 -80636361 + THE1B-int LTR MaLR 1 706 -945 858 188 106 62 chr4 121693160 121693368 -80634979 + AluJb SINE Alu 3 219 -93 218 265 15 30 chr4 121693390 121693522 -80634825 + A-rich Low_complexity Low_complexity 2 131 0 1691 175 20 14 chr4 121694722 121695014 -80633333 + AluJo SINE Alu 1 294 -18 415 321 45 87 chr4 121695668 121696048 -80632299 + L1MEd LINE L1 3 366 -5753 2348 216 39 37 chr4 121696109 121696674 -80631673 + MER74B LTR ERVL 57 622 0 303 289 119 47 chr4 121696745 121696980 -80631367 + L1MEd LINE L1 474 725 -5394 2204 89 0 35 chr4 121697529 121697843 -80630504 - AluSg1 SINE Alu -6 303 1 2130 149 46 0 chr4 121698731 121699079 -80629268 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr4 121699288 121699309 -80629038 + AT_rich Low_complexity Low_complexity 1 21 0 330 333 51 23 chr4 121700790 121700967 -80627380 + L1MC4 LINE L1 6766 6947 -1095 2230 105 13 3 chr4 121701115 121701419 -80626928 + AluSq SINE Alu 5 311 -2 2664 102 5 8 chr4 121701434 121701808 -80626539 - THE1C LTR MaLR 0 375 3 634 105 0 0 chr4 121701849 121701935 -80626412 + L1P LINE L1 11 96 -6050 297 306 83 35 chr4 121702056 121702200 -80626147 - L3 LINE CR1 -89 1488 1338 220 253 149 23 chr4 121702708 121702795 -80625552 - MIR3 SINE MIR -48 160 63 2850 7 0 0 chr4 121703890 121704197 -80624150 + AluYb8 SINE Alu 1 307 -11 24 0 0 0 chr4 121704378 121704402 -80623945 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 121705369 121705393 -80622954 + AT_rich Low_complexity Low_complexity 1 24 0 266 207 0 85 chr4 121705585 121705667 -80622680 - L1ME LINE L1 -473 5691 5617 1125 128 0 0 chr4 121705671 121705851 -80622496 + (TA)n Simple_repeat Simple_repeat 1 180 0 2226 123 3 0 chr4 121706135 121706444 -80621903 - AluSq SINE Alu 0 313 4 275 314 116 8 chr4 121706457 121706578 -80621769 + MER5A DNA MER1_type 56 189 0 19353 28 0 8 chr4 121707090 121709513 -80618834 + L1P LINE L1 1877 4279 -1867 21 82 0 0 chr4 121711303 121711352 -80616995 + AT_rich Low_complexity Low_complexity 1 49 0 21 82 0 0 chr4 121711409 121711458 -80616889 + AT_rich Low_complexity Low_complexity 1 49 0 215 316 29 65 chr4 121712120 121712259 -80616088 + MIR3 SINE MIR 15 148 -60 708 320 159 34 chr4 121712638 121713116 -80615231 - MER115 DNA AcHobo -146 547 10 265 292 92 39 chr4 121713425 121713555 -80614792 - L2 LINE L2 -5 3308 3172 2365 90 3 0 chr4 121713812 121714111 -80614236 + AluSp SINE Alu 1 300 -13 2477 97 27 19 chr4 121714391 121714763 -80613584 - THE1C LTR MaLR 0 375 1 866 221 0 0 chr4 121714833 121714996 -80613351 - FRAM SINE Alu -13 163 1 449 259 0 7 chr4 121715239 121715382 -80612965 + GA-rich Low_complexity Low_complexity 3 144 0 571 260 108 85 chr4 121715606 121716113 -80612234 + MLT1H LTR MaLR 15 533 -16 712 257 91 14 chr4 121716837 121717047 -80611300 - MIR SINE MIR -8 254 29 260 242 73 48 chr4 121717054 121717178 -80611169 - MIR SINE MIR -3 259 133 21 0 0 0 chr4 121717649 121717670 -80610677 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 121718091 121718112 -80610235 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 121718591 121718621 -80609726 + AT_rich Low_complexity Low_complexity 1 30 0 409 298 0 10 chr4 121719721 121719825 -80608522 + L2 LINE L2 3165 3267 -5 1446 229 72 21 chr4 121721085 121721504 -80606843 - L1MCc LINE L1 -5961 462 23 635 253 13 0 chr4 121721995 121722145 -80606202 - MLT1F LTR MaLR -2 540 389 451 241 143 15 chr4 121722250 121722383 -80605964 - MLT1E LTR MaLR -443 150 1 2035 151 40 3 chr4 121722659 121723010 -80605337 + THE1B LTR MaLR 1 364 0 235 308 31 0 chr4 121723306 121723371 -80604976 - MIR3 SINE MIR -32 176 110 225 259 185 12 chr4 121723396 121723477 -80604870 + L2 LINE L2 2325 2419 -895 360 294 145 42 chr4 121723563 121723777 -80604570 + L2 LINE L2 2615 2850 -464 226 167 0 56 chr4 121723793 121723847 -80604500 + LTR30 LTR ERV1 574 624 -98 2409 95 0 0 chr4 121723847 121724184 -80604163 + pTR5 LTR ERV1 52 388 -2050 633 349 88 29 chr4 121724184 121724568 -80603779 + L2 LINE L2 2864 3270 -2 595 234 41 0 chr4 121725761 121725906 -80602441 + L1MEc LINE L1 45 195 -6201 311 319 52 7 chr4 121726215 121726350 -80601997 - L1M4c LINE L1 -5058 1326 1186 30309 116 13 62 chr4 121726351 121732842 -80595505 - L1PA7 LINE L1 0 6154 1 419 224 20 10 chr4 121733293 121733391 -80594956 + MIR SINE MIR 93 191 -71 2133 40 44 11 chr4 121735085 121735357 -80592990 + AluY SINE Alu 29 309 -2 570 164 146 0 chr4 121735369 121735479 -80592868 + FLAM_C SINE Alu 1 126 -7 202 246 15 31 chr4 121735681 121735746 -80592601 + MIR SINE MIR 100 163 -99 21 0 0 0 chr4 121735878 121735899 -80592448 + AT_rich Low_complexity Low_complexity 1 21 0 466 110 44 22 chr4 121736945 121737036 -80591311 + L1MA9 LINE L1 6220 6312 0 2905 70 25 8 chr4 121738166 121738563 -80589784 + MLT2A1 LTR ERVL 1 404 -40 393 122 0 0 chr4 121738568 121738642 -80589705 + (TA)n Simple_repeat Simple_repeat 1 74 0 244 304 157 9 chr4 121738655 121738770 -80589577 - MIR SINE MIR -100 162 31 665 179 13 62 chr4 121738846 121739008 -80589339 + MER3 DNA MER1_type 32 138 -71 1865 184 49 34 chr4 121739410 121739818 -80588529 - MLT2D LTR ERVL 0 414 1 194 274 126 21 chr4 121740570 121740665 -80587682 - MIR SINE MIR -65 197 93 324 0 0 0 chr4 121741545 121741581 -80586766 + (TG)n Simple_repeat Simple_repeat 2 37 0 202 299 26 13 chr4 121742097 121742174 -80586173 - MIR3 SINE MIR -1 207 130 336 310 78 9 chr4 121743194 121743310 -80585037 - MIR SINE MIR -49 213 90 25 0 0 0 chr4 121743550 121743575 -80584772 + AT_rich Low_complexity Low_complexity 1 25 0 942 188 0 0 chr4 121743708 121743857 -80584490 + AluJb SINE Alu 138 286 -26 21 0 0 0 chr4 121743857 121743878 -80584469 + AT_rich Low_complexity Low_complexity 1 21 0 1970 197 69 13 chr4 121744104 121744581 -80583766 - Charlie1 DNA MER1_type -1 2760 2257 551 243 5 49 chr4 121744689 121744841 -80583506 - MIR SINE MIR -22 240 95 410 259 99 30 chr4 121746281 121746412 -80581935 - MIR SINE MIR -105 157 18 220 303 22 22 chr4 121746824 121746913 -80581434 + L3b LINE CR1 1268 1356 -227 21 0 0 0 chr4 121747120 121747141 -80581206 + AT_rich Low_complexity Low_complexity 1 21 0 2240 113 0 0 chr4 121748394 121748694 -80579653 + AluSg SINE Alu 1 300 -10 252 0 0 0 chr4 121749903 121749931 -80578416 + (CA)n Simple_repeat Simple_repeat 1 28 0 362 246 131 39 chr4 121749936 121750066 -80578281 - L2 LINE L2 0 3313 3172 379 293 208 31 chr4 121750185 121750574 -80577773 + L2 LINE L2 1791 2248 -1066 449 289 0 20 chr4 121750723 121750872 -80577475 - L1MA9 LINE L1 -38 6274 6129 625 325 93 35 chr4 121750900 121751362 -80576985 + L2 LINE L2 2302 2790 -524 194 306 56 42 chr4 121751464 121751608 -80576739 + L2 LINE L2 2891 3036 -236 291 361 93 46 chr4 121751619 121751899 -80576448 + L2 LINE L2 2933 3225 -47 27 87 0 0 chr4 121752657 121752726 -80575621 + AT_rich Low_complexity Low_complexity 1 69 0 466 308 205 21 chr4 121752844 121752882 -80575465 - L3 LINE CR1 -4 1573 1543 2314 129 21 13 chr4 121752882 121753254 -80575093 - THE1C LTR MaLR 0 375 1 466 308 205 21 chr4 121753254 121753449 -80574898 - L3 LINE CR1 -34 1543 1297 328 380 10 21 chr4 121753467 121753659 -80574688 + L2 LINE L2 2422 2611 -703 498 183 19 10 chr4 121753778 121753882 -80574465 + Charlie7 DNA MER1_type 1 105 -2507 445 186 47 31 chr4 121753869 121753998 -80574349 + Charlie7 DNA MER1_type 2434 2564 -48 * 21 36 0 0 chr4 121754200 121754228 -80574119 + AT_rich Low_complexity Low_complexity 1 28 0 640 239 162 4 chr4 121754307 121754554 -80573793 - L1MC4 LINE L1 -143 7899 7614 2865 131 4 2 chr4 121754572 121755022 -80573325 - L1PA15 LINE L1 -16 6149 5699 335 364 148 8 chr4 121755189 121755546 -80572801 - L3 LINE CR1 -1053 524 118 268 296 41 10 chr4 121755661 121755759 -80572588 + MIR SINE MIR 106 206 -56 685 233 75 6 chr4 121755878 121756037 -80572310 - MIR SINE MIR -77 185 16 2078 115 7 0 chr4 121756733 121757012 -80571335 + AluSx SINE Alu 32 312 0 24 53 0 0 chr4 121757437 121757475 -80570872 + AT_rich Low_complexity Low_complexity 1 38 0 2284 64 0 17 chr4 121757884 121758181 -80570166 + AluY SINE Alu 1 292 -19 2032 113 3 17 chr4 121758443 121758734 -80569613 + AluSx SINE Alu 1 287 -25 234 296 0 23 chr4 121760263 121760351 -80567996 + GA-rich Low_complexity Low_complexity 2 87 0 30 27 0 0 chr4 121760887 121760924 -80567423 + AT_rich Low_complexity Low_complexity 1 37 0 344 102 0 0 chr4 121761646 121761695 -80566652 - MADE1 DNA Mariner 0 80 32 285 167 74 0 chr4 121762341 121762395 -80565952 + HsTC2 DNA Tc2 1821 1878 -20 420 255 52 46 chr4 121762444 121762597 -80565750 + MER103 DNA DNA 13 166 0 189 290 110 50 chr4 121762861 121762961 -80565386 - L2 LINE L2 -20 3252 3147 614 271 24 3 chr4 121763536 121763747 -80564600 - L1ME1 LINE L1 -298 5864 5675 486 272 47 56 chr4 121763950 121764163 -80564184 - L2 LINE L2 0 3313 3103 384 341 63 33 chr4 121764293 121764595 -80563752 + L2 LINE L2 3003 3313 0 501 286 10 44 chr4 121765822 121766058 -80562289 - HERVL40 LTR ERVL -2184 1615 623 381 284 73 39 chr4 121767496 121767700 -80560647 + L1MB8 LINE L1 5965 6175 -3 * 980 257 111 0 chr4 121767697 121768085 -80560262 + L1ME LINE L1 5198 5633 -533 636 229 20 7 chr4 121768232 121768385 -80559962 + MIR SINE MIR 82 236 -26 233 260 158 51 chr4 121768885 121769062 -80559285 + MIR SINE MIR 54 249 -13 210 324 0 14 chr4 121769276 121769347 -80559000 - MIR3 SINE MIR -4 204 135 646 292 142 36 chr4 121769681 121770181 -80558166 + L2 LINE L2 1155 1707 -1607 41 58 0 0 chr4 121770348 121770417 -80557930 + AT_rich Low_complexity Low_complexity 1 69 0 369 248 142 0 chr4 121770936 121771049 -80557298 - MIR SINE MIR -89 173 45 508 291 63 6 chr4 121771592 121771750 -80556597 - MER5A DNA MER1_type -22 167 1 246 227 82 21 chr4 121772525 121772622 -80555725 - MIR SINE MIR -58 204 102 206 62 31 0 chr4 121772758 121772790 -80555557 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1252 295 96 34 chr4 121772791 121772839 -80555508 - L2 LINE L2 -22 3291 3247 2582 96 5 11 chr4 121772839 121773213 -80555134 + THE1C LTR MaLR 4 375 0 1252 295 96 34 chr4 121773213 121773955 -80554392 - L2 LINE L2 -66 3247 2445 261 0 0 0 chr4 121774526 121774555 -80553792 + (CA)n Simple_repeat Simple_repeat 2 30 0 276 376 168 20 chr4 121779625 121780019 -80548328 + L2 LINE L2 2818 3269 -3 803 178 67 0 chr4 121780289 121780424 -80547923 + AluJb SINE Alu 78 221 -91 334 250 13 0 chr4 121780709 121780785 -80547562 + MIR SINE MIR 80 156 -106 207 100 0 0 chr4 121781434 121781464 -80546883 + (A)n Simple_repeat Simple_repeat 1 30 0 335 302 249 5 chr4 121783276 121783481 -80544866 + MIR SINE MIR 8 262 0 944 182 0 0 chr4 121784243 121784397 -80543950 + FAM SINE Alu 1 41 -8 1544 307 196 21 chr4 121784418 121785317 -80543030 + L3 LINE CR1 401 1456 -121 191 111 0 28 chr4 121785844 121785880 -80542467 + (TCTCCC)n Simple_repeat Simple_repeat 5 39 0 310 313 61 0 chr4 121786668 121786799 -80541548 + MIR SINE MIR 109 247 -15 3250 63 11 7 chr4 121787104 121787547 -80540800 - L1PA7 LINE L1 0 6154 5710 2054 138 0 0 chr4 121788256 121788547 -80539800 - AluSx SINE Alu -21 291 1 557 150 30 15 chr4 121788807 121788940 -80539407 + CT-rich Low_complexity Low_complexity 3 137 0 1637 209 3 0 chr4 121788944 121789255 -80539092 - AluJb SINE Alu 0 312 1 236 30 30 0 chr4 121789857 121789890 -80538457 + (TG)n Simple_repeat Simple_repeat 2 35 0 1585 169 29 14 chr4 121791013 121791291 -80537056 + AluJb SINE Alu 1 282 -30 323 218 54 102 chr4 121791386 121791670 -80536677 - LTR37A LTR ERV1 0 426 197 705 325 133 25 chr4 121792250 121792987 -80535360 + L2 LINE L2 2490 3308 -5 29 0 0 0 chr4 121795301 121795330 -80533017 + AT_rich Low_complexity Low_complexity 1 29 0 254 50 25 0 chr4 121796583 121796623 -80531724 + (TA)n Simple_repeat Simple_repeat 1 41 0 2307 129 12 0 chr4 121797247 121797581 -80530766 - MER7A DNA MER2_type -9 337 2 222 122 61 0 chr4 121797595 121797644 -80530703 + (TA)n Simple_repeat Simple_repeat 1 52 0 235 295 0 0 chr4 121798183 121798261 -80530086 + MIR SINE MIR 129 206 -56 770 208 7 0 chr4 121798299 121798443 -80529904 + MLT1B LTR MaLR 1 145 -245 293 196 0 0 chr4 121798438 121798489 -80529858 + MLT1B LTR MaLR 336 386 -4 * 357 0 57 0 chr4 121799249 121799302 -80529045 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 22 0 0 0 chr4 121800742 121800764 -80527583 + AT_rich Low_complexity Low_complexity 1 22 0 253 328 35 78 chr4 121800770 121800886 -80527461 + L2 LINE L2 3160 3270 -2 595 355 138 28 chr4 121801688 121802746 -80525601 + L2 LINE L2 207 1380 -1934 1305 356 58 42 chr4 121802747 121803917 -80524430 + L2 LINE L2 1801 2988 -325 340 336 35 9 chr4 121803912 121804028 -80524319 + L2 LINE L2 3195 3313 0 * 251 296 71 47 chr4 121804045 121804214 -80524133 + L2 LINE L2 3012 3184 -129 266 349 23 0 chr4 121804306 121804392 -80523955 + L2 LINE L2 3184 3271 -1 2109 262 50 10 chr4 121805024 121805647 -80522700 - L1ME3A LINE L1 -100 6070 5423 1510 279 111 18 chr4 121805674 121806583 -80521764 - L1ME3A LINE L1 -778 5368 4375 24 53 0 0 chr4 121806762 121806800 -80521547 + AT_rich Low_complexity Low_complexity 1 38 0 190 342 13 38 chr4 121806823 121806902 -80521445 - L2 LINE L2 0 3272 3196 491 307 0 8 chr4 121807275 121807402 -80520945 + L2 LINE L2 3187 3312 -1 23 33 0 0 chr4 121807968 121807998 -80520349 + AT_rich Low_complexity Low_complexity 1 30 0 628 124 70 151 chr4 121808190 121808376 -80519971 + AluSg/x SINE Alu 128 298 -14 2616 134 17 42 chr4 121808376 121808587 -80519760 - L1MB5 LINE L1 -6 6168 5953 2149 94 13 13 chr4 121808587 121808896 -80519451 - AluSp SINE Alu -2 311 3 2616 134 17 42 chr4 121808896 121809160 -80519187 - L1MB5 LINE L1 -221 5953 5705 184 203 0 85 chr4 121809260 121809319 -80519028 + L3 LINE CR1 946 999 -578 21 82 0 0 chr4 121809455 121809504 -80518843 + AT_rich Low_complexity Low_complexity 1 49 0 1127 137 103 34 chr4 121809803 121810007 -80518340 + AluJo SINE Alu 85 302 -10 3831 175 18 3 chr4 121910516 121911246 -80417101 + L1P LINE L1 4611 5351 -795 2143 123 0 6 chr4 121911269 121911601 -80416746 - L1PB1 LINE L1 -2 6149 5820 1549 231 39 21 chr4 121912043 121912429 -80415918 - L1M1 LINE L1 -7168 397 5 189 0 0 0 chr4 121912619 121912640 -80415707 + (T)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr4 121912867 121912902 -80415445 + AT_rich Low_complexity Low_complexity 1 35 0 28 29 0 0 chr4 121913880 121913915 -80414432 + AT_rich Low_complexity Low_complexity 1 35 0 2671 20 0 0 chr4 121913937 121914239 -80414108 - AluYa5 SINE Alu -9 302 1 250 303 131 36 chr4 121915225 121915446 -80412901 + L2 LINE L2 1570 1811 -1503 480 168 420 0 chr4 121916016 121916147 -80412200 - MER5A DNA MER1_type 0 189 4 201 176 0 0 chr4 121917000 121917034 -80411313 + (TAA)n Simple_repeat Simple_repeat 1 34 0 2356 213 91 15 chr4 121917509 121918171 -80410176 + L1MC4a LINE L1 7097 7808 0 490 163 76 0 chr4 121920289 121920381 -80407966 + MER4A LTR ERV1 1 99 -565 1683 132 19 73 chr4 121920381 121920744 -80407603 + MER4A LTR ERV1 263 664 0 552 295 50 0 chr4 121923346 121923485 -80404862 - MIR SINE MIR -71 191 46 414 288 108 50 chr4 121923762 121923984 -80404363 + HAL1b LINE L1 455 689 -659 2538 114 14 3 chr4 121924060 121924420 -80403927 + THE1B LTR MaLR 1 364 0 250 207 17 0 chr4 121924726 121924784 -80403563 + A-rich Low_complexity Low_complexity 6 64 0 242 250 67 0 chr4 121925380 121925440 -80402907 - MER91A DNA MER1_type -16 180 117 1536 170 3 58 chr4 121925555 121925885 -80402462 - AluJb SINE Alu 0 312 1 320 345 65 0 chr4 121926002 121926141 -80402206 - L3 LINE CR1 -1029 548 401 28 61 0 0 chr4 121926500 121926549 -80401798 + AT_rich Low_complexity Low_complexity 1 49 0 242 286 98 38 chr4 121926558 121926691 -80401656 - MIR SINE MIR -44 218 78 435 324 14 7 chr4 121926771 121926910 -80401437 - MER5A DNA MER1_type -43 146 7 1650 169 0 14 chr4 121928610 121928889 -80399458 - AluJo SINE Alu -2 310 36 371 241 80 22 chr4 121930034 121930171 -80398176 - MIR SINE MIR -4 258 114 1034 188 76 4 chr4 121930738 121931015 -80397332 - L1 LINE L1 -1502 4644 4348 250 290 27 109 chr4 121931816 121931999 -80396348 + L2 LINE L2 1186 1353 -1961 305 300 33 8 chr4 121932952 121933072 -80395275 - L2 LINE L2 -15 3298 3176 498 343 126 32 chr4 121933123 121933489 -80394858 - L2 LINE L2 -337 2977 2552 1148 228 15 66 chr4 121933489 121933883 -80394464 + MLT1A2 LTR MaLR 1 374 0 498 343 126 32 chr4 121933883 121934009 -80394338 - L2 LINE L2 -762 2552 2439 200 271 12 71 chr4 121934347 121934432 -80393915 - L2 LINE L2 -234 3038 2959 2179 66 33 0 chr4 121934778 121935107 -80393240 + AluY SINE Alu 1 338 0 345 267 43 43 chr4 121935292 121935479 -80392868 - L1MC4a LINE L1 -1928 5880 5694 182 205 0 26 chr4 121935500 121935539 -80392808 + L2 LINE L2 3268 3305 -8 3053 118 60 10 chr4 121935558 121936074 -80392273 - L1PA13 LINE L1 -4 6159 5618 1766 166 0 0 chr4 121937241 121937553 -80390794 - AluJo SINE Alu 0 312 1 21 36 0 0 chr4 121938502 121938530 -80389817 + AT_rich Low_complexity Low_complexity 1 28 0 1571 147 97 0 chr4 121938625 121938907 -80389440 - AluSx SINE Alu 0 307 1 25 51 0 0 chr4 121939986 121940025 -80388322 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr4 121940369 121940395 -80387952 + AT_rich Low_complexity Low_complexity 1 26 0 869 214 22 6 chr4 121940641 121940819 -80387528 - Tigger4(Zombi) DNA MER2_type -2550 181 1 262 176 24 94 chr4 121940747 121940832 -80387515 + MER46A DNA MER2_type 75 153 -83 * 638 256 103 75 chr4 121940932 121941495 -80386852 + HAL1b LINE L1 256 834 -514 766 296 73 36 chr4 121941863 121942302 -80386045 - MLT1L LTR MaLR -13 602 148 28 29 0 0 chr4 121942913 121942948 -80385399 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr4 121943426 121943456 -80384891 + AT_rich Low_complexity Low_complexity 1 30 0 291 240 52 0 chr4 121943545 121943641 -80384706 - LTR37B LTR ERV1 0 468 368 239 289 66 7 chr4 121943671 121943823 -80384524 + L1MC4 LINE L1 5255 5415 -2393 1547 75 10 0 chr4 121943926 121944125 -80384222 + AluYa5 SINE Alu 99 299 -12 24 0 0 0 chr4 121944491 121944515 -80383832 + AT_rich Low_complexity Low_complexity 1 24 0 2072 178 72 8 chr4 121945157 121945557 -80382790 - MSTB LTR MaLR 0 426 1 238 203 31 16 chr4 121945957 121946021 -80382326 - L1ME LINE L1 -531 5590 5526 1686 195 50 18 chr4 121946087 121946471 -80381876 - MSTD LTR MaLR 0 396 1 5959 210 50 13 chr4 121946820 121948127 -80380220 + L1PA13 LINE L1 1 1356 -5431 2102 194 30 22 chr4 121948121 121948617 -80379730 + L1P LINE L1 3140 3639 -2507 * 2117 116 0 20 chr4 121948840 121949143 -80379204 + AluSx SINE Alu 1 297 -15 644 301 25 15 chr4 121951202 121951398 -80376949 - MIR SINE MIR -18 244 47 312 229 21 31 chr4 121951969 121952065 -80376282 + L1MC4 LINE L1 6609 6703 -1339 835 133 12 0 chr4 121952069 121952305 -80376042 + (TA)n Simple_repeat Simple_repeat 1 238 0 8306 137 26 16 chr4 121952323 121952798 -80375549 - Tigger4(Zombi) DNA MER2_type -10 2721 2253 1918 149 0 0 chr4 121952798 121953109 -80375238 + AluSx SINE Alu 1 311 0 8306 137 26 16 chr4 121953109 121954027 -80374320 - Tigger4(Zombi) DNA MER2_type -478 2253 1310 2183 131 35 5 chr4 121954135 121954510 -80373837 + L1MA5A LINE L1 5909 6294 -3 434 154 16 49 chr4 121954627 121954750 -80373597 - L1MC4 LINE L1 -937 7105 6987 26 0 0 0 chr4 121955500 121955526 -80372821 + AT_rich Low_complexity Low_complexity 1 26 0 252 354 67 34 chr4 121955839 121956017 -80372330 - MIR SINE MIR -71 191 8 185 234 221 39 chr4 121956056 121956133 -80372214 + MIR SINE MIR 41 131 -77 226 316 83 45 chr4 121956167 121956300 -80372047 - L2 LINE L2 -3 3310 3173 2672 127 11 9 chr4 121956449 121956897 -80371450 - L1MA8 LINE L1 -23 6268 5820 461 179 98 9 chr4 121957158 121957270 -80371077 - L1MB8 LINE L1 -6 6172 6051 * 2948 224 73 46 chr4 121957266 121959013 -80369334 + L1ME1 LINE L1 4365 6162 -4 21 0 0 0 chr4 121959281 121959302 -80369045 + AT_rich Low_complexity Low_complexity 1 21 0 2227 113 3 0 chr4 121959635 121959992 -80368355 - AluSx SINE Alu 0 358 1 254 337 0 0 chr4 121960670 121960765 -80367582 + L1MDb LINE L1 22 116 -6293 1820 148 63 37 chr4 121960767 121961118 -80367229 - THE1B LTR MaLR -2 362 3 9932 106 7 1 chr4 121961120 121962497 -80365850 - THE1B-int LTR MaLR 0 1580 195 22 35 0 0 chr4 121962722 121962751 -80365596 + AT_rich Low_complexity Low_complexity 1 29 0 2147 93 28 7 chr4 121963102 121963392 -80364955 - AluSx SINE Alu -15 297 2 1066 191 5 0 chr4 121963583 121963772 -80364575 - L1PA16 LINE L1 -9 6157 5968 36 53 0 0 chr4 121963780 121963837 -80364510 + AT_rich Low_complexity Low_complexity 1 57 0 409 302 9 9 chr4 121963912 121964028 -80364319 + MLT1I LTR MaLR 288 403 -6 1300 238 120 21 chr4 121964109 121964491 -80363856 + MLT1E LTR MaLR 94 513 -80 2120 141 35 91 chr4 121965194 121965647 -80362700 - MSTA LTR MaLR 0 428 1 1585 60 0 0 chr4 121965723 121965923 -80362424 + L1PA3 LINE L1 5953 6152 -3 1087 177 0 0 chr4 121965940 121966126 -80362221 + L1PB4 LINE L1 15 200 -6663 10091 109 50 3 chr4 121966126 121968286 -80360061 + L1PB4 LINE L1 634 3035 -3827 394 140 0 0 chr4 121968332 121968389 -80359958 + AluY SINE Alu 1 57 -246 2252 46 0 4 chr4 121968577 121968838 -80359509 + AluY SINE Alu 37 296 -15 1789 201 3 3 chr4 121968841 121969194 -80359153 + L1PB4 LINE L1 3104 3456 -3406 3856 160 4 32 chr4 121969195 121970211 -80358136 + L1PB4 LINE L1 5479 6392 -480 201 74 0 0 chr4 121970211 121970238 -80358109 + (TG)n Simple_repeat Simple_repeat 2 28 0 3856 160 4 32 chr4 121970238 121970669 -80357678 + L1PB4 LINE L1 6392 6834 -38 1532 196 18 18 chr4 121970818 121971099 -80357248 - AluJb SINE Alu -31 281 1 1439 203 6 18 chr4 121971099 121971429 -80356918 - L1 LINE L1 -1953 4193 3868 * 8018 229 36 60 chr4 121971425 121973068 -80355279 - L1PB4 LINE L1 -1 6155 4473 780 183 25 76 chr4 121973068 121973265 -80355082 - MLT1A1 LTR MaLR -45 320 134 8018 229 36 60 chr4 121973265 121975637 -80352710 - L1PB4 LINE L1 -1683 4473 2059 2468 246 22 11 chr4 121975709 121976438 -80351909 - L1 LINE L1 -3040 3106 2370 * 3628 186 26 4 chr4 121976437 121977170 -80351177 + L1MA9 LINE L1 4648 5396 -750 872 159 53 0 chr4 121977170 121977321 -80351026 - MSTA LTR MaLR -2 426 268 1096 179 93 37 chr4 121977525 121977771 -80350576 - MSTA LTR MaLR -168 260 1 1214 148 5 0 chr4 121977771 121977967 -80350380 + L1MA9 LINE L1 5390 5586 -726 956 157 0 62 chr4 121977970 121978180 -80350167 + L1MA9 LINE L1 6115 6311 -1 195 42 0 0 chr4 121978214 121978238 -80350109 + (TAA)n Simple_repeat Simple_repeat 2 25 0 581 137 43 8 chr4 121978387 121978504 -80349843 - L1MB1 LINE L1 -6 6162 6042 3610 176 59 8 chr4 121978604 121979410 -80348937 - L1MB1 LINE L1 -113 6055 5209 2294 199 25 13 chr4 121979950 121980427 -80347920 + MER31A LTR ERV1 1 483 -2 1447 255 138 43 chr4 121980961 121981517 -80346830 + MLT1E2 LTR MaLR 18 626 0 974 65 8 0 chr4 121982534 121982657 -80345690 + AluSp/q SINE Alu 183 306 -7 289 258 31 47 chr4 121983799 121983927 -80344420 + L1PBb LINE L1 149 274 -5930 4130 222 46 40 chr4 121984134 121985655 -80342692 + L1PBb LINE L1 354 2004 -4199 1336 110 93 42 chr4 121985756 121985993 -80342354 - THE1B LTR MaLR -115 249 1 349 335 40 17 chr4 121985993 121986166 -80342181 + L1MDa LINE L1 121 297 -6243 2278 212 87 90 chr4 121986532 121987191 -80341156 + L1MDa LINE L1 843 1537 -5003 302 68 0 0 chr4 121987191 121987235 -80341112 - MADE1 DNA Mariner 0 80 37 2278 212 87 90 chr4 121987235 121987702 -80340645 + L1MDa LINE L1 1537 2004 -4536 875 139 9 139 chr4 121987712 121987942 -80340405 + L1PBa LINE L1 1 200 -6663 12317 161 64 17 chr4 121987944 121988884 -80339463 + L1PBa LINE L1 636 1530 -5332 1717 153 4 0 chr4 121988884 121989139 -80339208 + AluSx SINE Alu 26 281 -31 12317 161 64 17 chr4 121989139 121992472 -80335875 + L1PBa LINE L1 1530 5114 -1748 202 0 91 0 chr4 121992472 121992505 -80335842 + A-rich Low_complexity Low_complexity 2 37 0 4649 215 48 22 chr4 121992517 121992661 -80335686 - L1PA12 LINE L1 -6594 987 848 2208 132 0 0 chr4 121992661 121992972 -80335375 + AluY SINE Alu 1 311 0 4649 215 48 22 chr4 121992972 121993559 -80334788 - L1PA12 LINE L1 -6733 848 223 180 0 0 0 chr4 121993559 121993579 -80334768 + (CTCA)n Simple_repeat Simple_repeat 4 23 0 4649 215 48 22 chr4 121993579 121993803 -80334544 - L1PA12 LINE L1 -7358 223 6 357 223 7 7 chr4 121993815 121993933 -80334414 - L1MDa LINE L1 -3890 2650 2584 1227 228 90 12 chr4 121993941 121994363 -80333984 - L1MDa LINE L1 -4081 2459 2005 1870 247 73 12 chr4 121994392 121995162 -80333185 + L1M4 LINE L1 2445 3261 -2885 1647 242 91 31 chr4 121995162 121995789 -80332558 + LTR68 LTR ERV1 1 740 0 1407 245 46 15 chr4 121995790 121996271 -80332076 + L1M4 LINE L1 3259 3754 -2392 527 219 26 0 chr4 121996291 121996405 -80331942 + L1M4 LINE L1 16 132 -6410 2022 230 100 20 chr4 121996412 121997203 -80331144 + L1M4 LINE L1 1004 1857 -4789 548 271 50 75 chr4 121997202 121997251 -80331096 + L1MD2 LINE L1 6084 6133 -226 * 405 0 0 0 chr4 121997251 121997296 -80331051 + (CA)n Simple_repeat Simple_repeat 2 46 0 548 271 50 75 chr4 121997296 121997527 -80330820 + L1MD2 LINE L1 6133 6357 -2 1226 164 13 44 chr4 121998876 121999101 -80329246 + AluJb SINE Alu 81 298 -14 365 329 42 13 chr4 121999208 121999588 -80328759 - L1ME4a LINE L1 -237 5884 5494 748 255 98 22 chr4 121999857 122000252 -80328095 - L1ME3A LINE L1 0 6170 5727 881 304 132 12 chr4 122000328 122000844 -80327503 + HAL1 LINE L1 1287 1864 -643 321 265 70 49 chr4 122001046 122001231 -80327116 + HAL1b LINE L1 746 934 -414 263 292 0 14 chr4 122002800 122002872 -80325475 + MIR SINE MIR 82 152 -110 26 30 0 0 chr4 122002952 122002985 -80325362 + AT_rich Low_complexity Low_complexity 1 33 0 23 68 0 0 chr4 122003091 122003135 -80325212 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr4 122003173 122003198 -80325149 + AT_rich Low_complexity Low_complexity 1 25 0 2284 74 3 29 chr4 122003550 122003862 -80324485 - AluY SINE Alu -7 304 1 448 282 93 33 chr4 122004768 122005154 -80323193 + LTR33A LTR ERVL 61 473 -50 24 32 0 0 chr4 122005603 122005634 -80322713 + AT_rich Low_complexity Low_complexity 1 31 0 990 258 126 20 chr4 122006800 122006830 -80321517 + LTR50 LTR ERVL 4 29 -766 1714 189 45 14 chr4 122006830 122007184 -80321163 + MLT1A1 LTR MaLR 1 365 0 990 258 126 20 chr4 122007184 122007790 -80320557 + LTR50 LTR ERVL 29 793 -2 1488 194 147 12 chr4 122008470 122008816 -80319531 + MSTD LTR MaLR 1 393 -3 36 23 0 0 chr4 122009139 122009182 -80319165 + AT_rich Low_complexity Low_complexity 1 43 0 332 284 46 88 chr4 122009213 122009452 -80318895 + L1ME LINE L1 5518 5746 -375 1387 154 4 0 chr4 122009573 122009800 -80318547 + L1PB3 LINE L1 5923 6150 -4 1305 178 103 0 chr4 122010051 122010304 -80318043 + AluJb SINE Alu 1 279 -33 23 54 0 0 chr4 122010381 122010418 -80317929 + AT_rich Low_complexity Low_complexity 1 37 0 2162 129 0 0 chr4 122010465 122010768 -80317579 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr4 122010842 122010863 -80317484 + AT_rich Low_complexity Low_complexity 1 21 0 301 304 52 15 chr4 122010977 122011112 -80317235 + MIR SINE MIR 96 235 -27 327 226 0 0 chr4 122011648 122011710 -80316637 + Tigger5 DNA MER2_type 1 62 -2261 * 1523 141 23 4 chr4 122011708 122011964 -80316383 + Tigger5 DNA MER2_type 2062 2322 -1 198 0 0 0 chr4 122012573 122012595 -80315752 + (A)n Simple_repeat Simple_repeat 1 22 0 16922 191 78 11 chr4 122012786 122019934 -80308413 + L1MA2 LINE L1 5 7723 0 498 259 102 80 chr4 122020184 122020597 -80307750 + Charlie8 DNA MER1_type 71 492 -1925 590 242 22 44 chr4 122020850 122021032 -80307315 - MER5B DNA MER1_type 0 178 1 368 261 72 18 chr4 122021256 122021367 -80306980 - LTR16A1 LTR ERVL -165 292 176 182 250 0 0 chr4 122021649 122021685 -80306662 + MIR3 SINE MIR 146 181 -27 1884 135 0 4 chr4 122022098 122022365 -80305982 + AluSx SINE Alu 7 272 -40 189 107 0 0 chr4 122022974 122023002 -80305345 + (TA)n Simple_repeat Simple_repeat 2 29 0 384 286 79 26 chr4 122023086 122023275 -80305072 - MIR SINE MIR -56 206 8 22 35 0 0 chr4 122023941 122023970 -80304377 + AT_rich Low_complexity Low_complexity 1 29 0 440 249 107 39 chr4 122024078 122024311 -80304036 - L2 LINE L2 -42 3271 3023 22 0 0 0 chr4 122024383 122024405 -80303942 + AT_rich Low_complexity Low_complexity 1 22 0 2348 115 27 53 chr4 122024543 122024917 -80303430 + THE1B LTR MaLR 1 364 0 191 366 37 0 chr4 122025117 122025199 -80303148 + MIR SINE MIR 37 121 -87 38 39 0 0 chr4 122025428 122025480 -80302867 + AT_rich Low_complexity Low_complexity 1 52 0 421 289 64 25 chr4 122026347 122026551 -80301796 + MIR SINE MIR 22 233 -29 1383 224 49 25 chr4 122027051 122027458 -80300889 - LTR52 LTR ERVL -4 417 1 226 397 56 8 chr4 122028569 122028695 -80299652 + L2 LINE L2 3140 3271 -1 642 272 263 12 chr4 122029661 122029984 -80298363 - L2 LINE L2 0 3313 2910 2059 147 5 49 chr4 122030172 122030540 -80297807 - THE1B LTR MaLR -12 352 1 11189 100 13 1 chr4 122030540 122032100 -80296247 - THE1B-int LTR MaLR 0 1580 3 2057 171 8 25 chr4 122032102 122032470 -80295877 - THE1B LTR MaLR 0 364 3 26 0 0 0 chr4 122033500 122033526 -80294821 + AT_rich Low_complexity Low_complexity 1 26 0 2171 98 0 29 chr4 122036073 122036380 -80291967 - AluY SINE Alu -13 298 1 605 285 92 37 chr4 122036822 122037148 -80291199 - L1M4 LINE L1 -2699 3447 3104 11555 216 41 10 chr4 122037148 122037472 -80290875 - L1PB1 LINE L1 -1 6150 5838 189 0 0 0 chr4 122037472 122037493 -80290854 + (TTA)n Simple_repeat Simple_repeat 2 22 0 11555 216 41 10 chr4 122037493 122037516 -80290831 - L1PB1 LINE L1 -313 5838 5817 294 29 0 0 chr4 122037516 122037551 -80290796 + (CA)n Simple_repeat Simple_repeat 1 35 0 11555 216 41 10 chr4 122037551 122038006 -80290341 - L1PB1 LINE L1 -334 5817 5378 2494 54 0 3 chr4 122038006 122038302 -80290045 - AluY SINE Alu -16 295 1 11555 216 41 10 chr4 122038302 122041049 -80287298 - L1PB1 LINE L1 -773 5378 2326 5612 137 6 6 chr4 122041051 122041897 -80286450 + THE1C-int LTR MaLR 731 1576 -4 1960 121 109 18 chr4 122041901 122042241 -80286106 + THE1C LTR MaLR 1 371 -4 322 336 109 7 chr4 122042247 122042346 -80286001 + MLT2B1 LTR ERVL 352 439 -115 545 28 14 0 chr4 122042346 122042417 -80285930 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 322 336 109 7 chr4 122042417 122042454 -80285893 + MLT2B1 LTR ERVL 439 547 -7 1921 256 72 39 chr4 122042489 122043076 -80285271 + ERVL-B1 LTR ERVL 45 650 -5114 * 4259 115 51 30 chr4 122043074 122043869 -80284478 - MER61A-int LTR ERV1 -2047 4949 4172 1951 124 4 4 chr4 122043869 122044143 -80284204 - AluSx SINE Alu -38 274 1 4259 115 51 30 chr4 122044143 122044234 -80284113 - MER61A-int LTR ERV1 -2824 4172 1655 297 48 24 0 chr4 122044236 122044278 -80284069 - MER61A-int LTR ERV1 -3855 1362 1320 1400 166 40 11 chr4 122044340 122044783 -80283564 - MER61A-int LTR ERV1 -4535 682 160 6847 84 201 107 chr4 122044783 122046333 -80282014 - pTR5 LTR ERV1 0 2438 743 722 166 25 68 chr4 122046332 122046495 -80281852 - MER61A-int LTR ERV1 -5050 167 12 * 1581 145 53 98 chr4 122046506 122046612 -80281735 - MER61A LTR ERV1 0 343 234 186 43 0 0 chr4 122046612 122046635 -80281712 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1581 145 53 98 chr4 122046635 122046650 -80281697 - MER61A LTR ERV1 -109 234 220 12770 25 1 0 chr4 122046650 122048917 -80279430 - L1PA3 LINE L1 -5 6150 3882 1581 145 53 98 chr4 122048917 122049153 -80279194 - MER61A LTR ERV1 -123 220 1 12650 201 26 6 chr4 122049158 122051535 -80276812 + ERVL-B1 LTR ERVL 816 3239 -2525 332 200 0 0 chr4 122051540 122051600 -80276747 - HERVL LTR ERVL -4078 1576 1517 1440 190 43 0 chr4 122051663 122051916 -80276431 + ERVL-B1 LTR ERVL 3242 3505 -2259 1782 183 35 5 chr4 122051940 122052317 -80276030 - L1MC3 LINE L1 -692 7093 6706 806 244 100 13 chr4 122052319 122052549 -80275798 - L2 LINE L2 -525 2789 2540 351 321 62 44 chr4 122052560 122052834 -80275513 - L1M3c LINE L1 -4555 1586 1308 665 287 41 12 chr4 122052854 122053098 -80275249 + L2 LINE L2 3063 3313 0 24 53 0 0 chr4 122054511 122054549 -80273798 + AT_rich Low_complexity Low_complexity 1 38 0 356 370 14 25 chr4 122054794 122055075 -80273272 + L1ME LINE L1 2527 2804 -3342 2409 46 3 0 chr4 122055111 122055441 -80272906 + AluY SINE Alu 1 331 0 4933 120 56 1 chr4 122055452 122056250 -80272097 + L1MA3 LINE L1 5362 6203 -102 300 314 70 43 chr4 122056269 122056454 -80271893 + L1ME LINE L1 2956 3145 -3001 238 257 40 10 chr4 122056455 122056556 -80271791 + L1ME LINE L1 5440 5543 -627 624 48 0 0 chr4 122059711 122059795 -80268552 + (TCTA)n Simple_repeat Simple_repeat 3 86 0 248 204 3 99 chr4 122060628 122060827 -80267520 + T-rich Low_complexity Low_complexity 3 301 0 218 261 101 14 chr4 122061888 122061957 -80266390 + MIR3 SINE MIR 126 200 -8 2075 116 0 14 chr4 122061999 122062292 -80266055 + AluY SINE Alu 1 289 -22 218 54 0 27 chr4 122062296 122062333 -80266014 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 643 206 0 24 chr4 122062373 122062499 -80265848 + FLAM_C SINE Alu 7 129 -14 1793 261 54 49 chr4 122062540 122063112 -80265235 + L1M4b LINE L1 5 579 -6280 3076 161 108 56 chr4 122063112 122064072 -80264275 + L1MB8 LINE L1 5172 6178 0 780 319 120 43 chr4 122064354 122065231 -80263116 - L1M4 LINE L1 -1242 4904 4096 306 0 0 0 chr4 122065231 122065265 -80263082 + (TTA)n Simple_repeat Simple_repeat 3 36 0 7625 23 0 0 chr4 122065265 122066640 -80261707 - L1PA3 LINE L1 -18 6137 4763 780 319 120 43 chr4 122066640 122066728 -80261619 - L1M4 LINE L1 -2049 4097 3864 283 314 20 0 chr4 122066732 122066834 -80261513 - LTR67 LTR ERVL -23 534 431 2020 125 174 8 chr4 122067348 122067715 -80260632 + MSTA LTR MaLR 1 428 0 472 304 108 40 chr4 122067939 122068367 -80259980 - L1M4 LINE L1 -2695 3451 2995 235 309 58 11 chr4 122069437 122069625 -80258722 - L1ME LINE L1 -297 5824 5628 21 0 0 0 chr4 122069700 122069721 -80258626 + AT_rich Low_complexity Low_complexity 1 21 0 326 305 59 21 chr4 122069828 122070015 -80258332 - L1ME LINE L1 -839 5307 5114 800 255 57 44 chr4 122070036 122070334 -80258013 - MER76 LTR ERV -32 656 355 1656 135 31 21 chr4 122070338 122070515 -80257832 - L1MC1 LINE L1 -53 6280 6097 1422 220 84 26 chr4 122070515 122070860 -80257487 + MLT1A1 LTR MaLR 1 365 0 1656 135 31 21 chr4 122070860 122070970 -80257377 - L1MC1 LINE L1 -236 6097 5990 1981 167 33 25 chr4 122071568 122071927 -80256420 - THE1B LTR MaLR -2 362 1 10806 112 15 6 chr4 122071927 122073494 -80254853 - THE1B-int LTR MaLR 0 1580 1 1974 125 88 26 chr4 122073494 122073837 -80254510 - THE1B LTR MaLR 0 364 1 255 224 47 12 chr4 122074216 122074301 -80254046 + HAL1b LINE L1 467 554 -794 459 330 100 27 chr4 122076177 122076547 -80251800 + L1MC/D LINE L1 5351 5747 -2061 480 163 81 24 chr4 122076802 122076925 -80251422 + MER104 DNA Tc2 5 134 -46 811 234 35 89 chr4 122077103 122077385 -80250962 + MER76 LTR ERV 54 320 -368 715 174 76 7 chr4 122077407 122077551 -80250796 - MER7A DNA MER2_type -148 198 47 1143 187 116 25 chr4 122177629 122178031 -80150316 - MER31A LTR ERV1 0 485 4 489 223 69 15 chr4 122178996 122179126 -80149221 + MLT1E1 LTR MaLR 1 137 -517 2029 127 0 11 chr4 122179140 122179451 -80148896 + AluSg SINE Alu 1 308 0 501 340 62 24 chr4 122179464 122179837 -80148510 + L1ME LINE L1 140 526 -5544 525 244 15 35 chr4 122179841 122179875 -80148472 + L1ME LINE L1 2382 2415 -3665 1461 129 9 21 chr4 122179875 122180108 -80148239 + MER30 DNA MER1_type 1 230 0 525 244 15 35 chr4 122180108 122180270 -80148077 + L1ME LINE L1 2415 2574 -3506 682 286 24 39 chr4 122180296 122180551 -80147796 - MLT1D LTR MaLR -21 484 234 1784 113 0 4 chr4 122180654 122180893 -80147454 + AluSg SINE Alu 55 292 -18 201 167 0 0 chr4 122180893 122180929 -80147418 + (TTAA)n Simple_repeat Simple_repeat 1 36 0 210 309 114 33 chr4 122181465 122181631 -80146716 + MIR SINE MIR 36 216 -46 23 33 0 0 chr4 122182809 122182839 -80145508 + AT_rich Low_complexity Low_complexity 1 30 0 1295 216 40 43 chr4 122182917 122183145 -80145202 - MLT1A2 LTR MaLR -2 372 144 1474 195 99 12 chr4 122183145 122183488 -80144859 - MER93b LTR ERV1 0 373 1 1295 216 40 43 chr4 122183488 122183629 -80144718 - MLT1A2 LTR MaLR -230 144 4 351 297 0 0 chr4 122185033 122185208 -80143139 + (TA)n Simple_repeat Simple_repeat 2 176 0 2570 99 3 0 chr4 122185224 122185579 -80142768 + L1PB1 LINE L1 5788 6143 -8 2427 79 3 9 chr4 122186321 122186636 -80141711 - AluSp SINE Alu 0 313 1 414 0 0 0 chr4 122187088 122187134 -80141213 + (TG)n Simple_repeat Simple_repeat 1 46 0 1983 67 0 30 chr4 122187410 122187677 -80140670 - AluY SINE Alu -8 303 45 229 181 28 42 chr4 122187721 122187793 -80140554 + L1ME4a LINE L1 5969 6039 -82 250 135 0 0 chr4 122188130 122188167 -80140180 - MLT1A1 LTR MaLR -1 364 328 10200 33 1 112 chr4 122188208 122189651 -80138696 - SVA Other Other -3 1383 101 2326 96 3 0 chr4 122190564 122190866 -80137481 + AluSg SINE Alu 1 303 -7 2238 122 0 3 chr4 122191251 122191563 -80136784 + AluSx SINE Alu 1 311 -1 224 197 61 27 chr4 122191620 122191767 -80136580 + (TATAA)n Simple_repeat Simple_repeat 3 154 0 849 206 48 123 chr4 122191981 122192437 -80135910 + L1MCb LINE L1 1 422 -5623 203 244 0 0 chr4 122192482 122192523 -80135824 + GA-rich Low_complexity Low_complexity 5 45 0 447 211 10 10 chr4 122192534 122192638 -80135709 + L1MCb LINE L1 462 565 -5480 311 277 0 24 chr4 122192638 122192721 -80135626 + AluJb SINE Alu 179 259 -43 311 277 0 24 chr4 122192764 122192847 -80135500 + AluJb SINE Alu 179 259 -43 311 277 0 24 chr4 122192890 122192973 -80135374 + AluJb SINE Alu 179 259 -43 361 291 130 79 chr4 122192988 122193280 -80135067 + L1P4 LINE L1 496 802 -5985 * 13222 224 35 22 chr4 122193252 122198350 -80129997 + L1P4 LINE L1 1289 6439 -378 749 125 50 0 chr4 122198471 122198591 -80129756 + MER30 DNA MER1_type 105 230 0 438 245 25 6 chr4 122198594 122198753 -80129594 + L1M4 LINE L1 2479 2640 -3506 1784 239 12 38 chr4 122198779 122199276 -80129071 - MLT1D LTR MaLR -21 484 1 1237 238 37 61 chr4 122199278 122199395 -80128952 + L1M4 LINE L1 2638 2756 -3390 4157 77 0 30 chr4 122199395 122199992 -80128355 + L1PB1 LINE L1 5573 6151 0 1237 238 37 61 chr4 122199992 122200382 -80127965 + L1M4 LINE L1 2756 3133 -3013 359 188 88 0 chr4 122200539 122200619 -80127728 + MER70B LTR ERVL 1 87 -491 3970 257 35 15 chr4 122200629 122202574 -80125773 + L1PA13 LINE L1 53 2095 -4744 1166 210 31 38 chr4 122202574 122202725 -80125622 + L1PA13 LINE L1 2526 2676 -4173 1867 140 65 0 chr4 122202725 122203004 -80125343 + AluSq SINE Alu 1 297 -16 1166 210 31 38 chr4 122203004 122203171 -80125176 + L1PA13 LINE L1 2676 2842 -4007 513 148 9 9 chr4 122203176 122203288 -80125059 - L1PA15-16 LINE L1 -3918 2931 2820 1246 185 42 7 chr4 122203297 122203667 -80124680 + L1PA15 LINE L1 2800 3179 -4405 2462 237 13 6 chr4 122203670 122204329 -80124018 + L1MDa LINE L1 2509 3172 -3368 7529 174 12 18 chr4 122204348 122206561 -80121786 + L1PA15 LINE L1 5115 7311 -292 908 182 11 0 chr4 122206557 122206738 -80121609 - L1P LINE L1 -1101 5045 4863 * 22091 169 29 20 chr4 122206749 122212120 -80116227 + L1P4 LINE L1 515 6009 -474 988 262 65 15 chr4 122212142 122212405 -80115942 + MER70A LTR ERVL 64 339 -133 3492 176 18 1 chr4 122212505 122213687 -80114660 - L1P5 LINE L1 -472 5679 4477 7386 96 3 0 chr4 122213696 122215516 -80112831 - L1PA8 LINE L1 -6 6166 4323 7468 32 0 1 chr4 122215516 122216571 -80111776 + L1PA4 LINE L1 5111 6164 0 5436 103 4 12 chr4 122216600 122216696 -80111651 - L1PA8 LINE L1 -1812 4334 4239 2368 100 0 0 chr4 122216696 122217005 -80111342 - AluSg SINE Alu -1 309 1 5436 103 4 12 chr4 122217005 122217796 -80110551 - L1PA8 LINE L1 -1907 4239 3455 2644 194 15 2 chr4 122218635 122219099 -80109248 - MER70A LTR ERVL -2 470 1 191 176 78 20 chr4 122219509 122219560 -80108787 + MIR3 SINE MIR 152 205 -3 2217 135 13 36 chr4 122220200 122220361 -80107986 + THE1C LTR MaLR 1 164 -211 2288 103 7 0 chr4 122220361 122220671 -80107676 - AluSp SINE Alu 0 313 2 2217 135 13 36 chr4 122220671 122220893 -80107454 + THE1C LTR MaLR 164 375 0 2961 155 100 29 chr4 122220895 122221564 -80106783 + THE1C-int LTR MaLR 3 611 -969 10781 190 43 45 chr4 122221583 122225648 -80102699 + L1MA9 LINE L1 2258 6312 0 328 111 11 0 chr4 122226533 122226623 -80101724 + L1PA13 LINE L1 5919 6144 -19 22 56 0 0 chr4 122227310 122227346 -80101001 + AT_rich Low_complexity Low_complexity 1 36 0 192 333 10 21 chr4 122227694 122227790 -80100557 + MIR3 SINE MIR 68 162 -46 827 307 39 8 chr4 122228018 122228339 -80100008 + L2 LINE L2 2707 3038 -275 279 208 19 0 chr4 122228358 122228411 -80099936 + MER58 DNA MER1_type 10 63 -152 1772 169 89 51 chr4 122228420 122228834 -80099513 - MSTB1 LTR MaLR 0 432 3 4174 222 99 14 chr4 122228837 122229814 -80098533 - MSTB1-int LTR MaLR -1 1650 591 434 266 14 50 chr4 122229827 122229966 -80098381 + L2 LINE L2 3180 3313 0 487 48 99 18 chr4 122230289 122230631 -80097716 + (TA)n Simple_repeat Simple_repeat 1 369 0 4102 279 20 12 chr4 122230745 122231786 -80096561 + HERV3 LTR ERV1 1316 2364 -6062 13824 269 30 40 chr4 122231792 122236454 -80091893 + HERV3 LTR ERV1 3750 8362 -373 833 233 68 37 chr4 122236584 122237002 -80091345 + LTR30 LTR ERV1 109 493 0 457 284 6 9 chr4 122237004 122237165 -80091182 + MIR SINE MIR 54 252 -10 476 124 10 41 chr4 122238582 122238679 -80089668 - L1PA16 LINE L1 -5 6161 6068 1277 193 37 19 chr4 122238680 122239001 -80089346 - L1 LINE L1 -1537 4609 4283 396 263 106 31 chr4 122239647 122239807 -80088540 - MIR SINE MIR -74 188 17 22 0 0 0 chr4 122240562 122240584 -80087763 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr4 122241050 122241079 -80087268 + AT_rich Low_complexity Low_complexity 1 29 0 1950 139 14 0 chr4 122241332 122241626 -80086721 - AluSg SINE Alu -12 298 1 1743 208 59 5 chr4 122241653 122242024 -80086323 + MSTD LTR MaLR 3 393 -3 15028 198 15 5 chr4 122242689 122243324 -80085023 + L1PA14 LINE L1 1921 2549 -5035 2266 82 3 23 chr4 122243324 122243628 -80084719 - AluY SINE Alu -13 298 1 15028 198 15 5 chr4 122243628 122247208 -80081139 + L1PA14 LINE L1 2549 6184 -1400 5553 113 36 2 chr4 122247321 122248375 -80079972 + L1PA14 LINE L1 6505 7590 -9 607 254 15 0 chr4 122248797 122248927 -80079420 + MLT1E LTR MaLR 1 132 -461 1536 103 48 85 chr4 122248927 122249198 -80079149 + THE1C LTR MaLR 1 261 -114 226 172 0 0 chr4 122249201 122249259 -80079088 + MLT1E1 LTR MaLR 574 631 -23 752 207 35 41 chr4 122249519 122249688 -80078659 + FRAM SINE Alu 1 168 -8 404 305 113 44 chr4 122249969 122250301 -80078046 + L1MEc LINE L1 996 1312 -4893 218 233 41 55 chr4 122250362 122250435 -80077912 + MER5A DNA MER1_type 36 107 -82 540 213 22 15 chr4 122250459 122250595 -80077752 + L1MC3 LINE L1 7345 7481 -304 356 148 0 12 chr4 122250607 122250688 -80077659 + (GGAA)n Simple_repeat Simple_repeat 4 83 0 1217 174 37 27 chr4 122250688 122250987 -80077360 + L1MC3 LINE L1 7465 7766 -19 205 149 43 43 chr4 122251045 122251092 -80077255 - MIR SINE MIR -101 161 115 25 0 0 0 chr4 122251132 122251157 -80077190 + AT_rich Low_complexity Low_complexity 1 25 0 2207 115 10 13 chr4 122251366 122251678 -80076669 - AluSx SINE Alu -1 311 1 381 307 60 42 chr4 122251981 122252147 -80076200 + MIR SINE MIR 63 231 -31 2239 122 3 20 chr4 122252213 122252556 -80075791 - MER1B DNA MER1_type 0 337 1 362 273 50 8 chr4 122253558 122253679 -80074668 + L2 LINE L2 3188 3313 0 1384 165 0 13 chr4 122254746 122254976 -80073371 + AluJb SINE Alu 86 312 0 422 299 73 0 chr4 122255149 122255313 -80073034 - MLT1L LTR MaLR 0 615 440 2387 46 0 33 chr4 122255448 122255751 -80072596 - AluY SINE Alu -15 296 4 285 309 0 32 chr4 122255870 122255964 -80072383 - MLT1L LTR MaLR -524 91 1 777 302 42 40 chr4 122256177 122256314 -80072033 - MARNA DNA Mariner -23 563 428 2168 97 30 13 chr4 122256314 122256614 -80071733 - AluSx SINE Alu -7 305 1 777 302 42 40 chr4 122256614 122256903 -80071444 - MARNA DNA Mariner -158 428 136 21 0 0 0 chr4 122257046 122257067 -80071280 + AT_rich Low_complexity Low_complexity 1 21 0 195 300 20 0 chr4 122257110 122257160 -80071187 + L2 LINE L2 3263 3313 0 209 200 25 0 chr4 122258053 122258093 -80070254 + (CA)n Simple_repeat Simple_repeat 2 42 0 232 300 11 0 chr4 122259114 122259204 -80069143 - L1M4 LINE L1 -1306 4840 4750 21 36 0 0 chr4 122259578 122259606 -80068741 + AT_rich Low_complexity Low_complexity 1 28 0 208 75 19 94 chr4 122259830 122259883 -80068464 + (TA)n Simple_repeat Simple_repeat 1 49 0 443 313 90 17 chr4 122260712 122260945 -80067402 - MIR SINE MIR -10 252 3 612 228 138 45 chr4 122260963 122261363 -80066984 + LTR50 LTR ERVL 1 437 -358 365 283 83 25 chr4 122262184 122262304 -80066043 - L2 LINE L2 -1 3271 3145 657 111 0 10 chr4 122262421 122262520 -80065827 + MER4A LTR ERV1 1 98 -566 1719 121 23 33 chr4 122262520 122262867 -80065480 + MER4A LTR ERV1 261 662 -2 1568 94 122 38 chr4 122262869 122263156 -80065191 + MER4A-int LTR ERV1 1 311 -6287 386 248 95 112 chr4 122263212 122263579 -80064768 + LTR1B LTR ERV1 28 388 -397 620 165 93 10 chr4 122263580 122263815 -80064532 + MER4A LTR ERV1 374 664 0 20048 122 62 33 chr4 122263815 122267619 -80060728 + MER51B-int LTR ERV1 1600 5513 -2303 10520 112 94 78 chr4 122267618 122268169 -80060178 + MER51B-int LTR ERV1 5249 5790 -2026 * 2080 132 0 7 chr4 122268169 122268473 -80059874 + AluY SINE Alu 1 302 -9 10520 112 94 78 chr4 122268473 122270277 -80058070 + MER51B-int LTR ERV1 5790 7816 0 2069 99 0 147 chr4 122270280 122270596 -80057751 + MER51B LTR ERV1 2 248 -129 2279 76 40 13 chr4 122270596 122270899 -80057448 - AluY SINE Alu 0 311 1 2069 99 0 147 chr4 122270899 122270984 -80057363 + MER51B LTR ERV1 248 344 -33 645 147 5 18 chr4 122270970 122271103 -80057244 + MER51B LTR ERV1 281 377 0 * 1518 137 32 34 chr4 122271104 122271558 -80056789 + MER4A-int LTR ERV1 672 1180 -5578 1976 152 0 3 chr4 122271576 122271866 -80056481 - AluSx SINE Alu -23 289 1 2997 115 87 9 chr4 122271866 122272415 -80055932 + MER4A-int LTR ERV1 1763 2354 -4244 1700 156 60 10 chr4 122272433 122272735 -80055612 - LTR8 LTR ERV1 -374 317 1 3583 127 94 37 chr4 122272735 122273624 -80054723 + MER4A-int LTR ERV1 2737 3676 -2922 * 14964 121 59 22 chr4 122273621 122276304 -80052043 + MER4A-int LTR ERV1 3815 6596 -2 675 104 9 9 chr4 122276310 122276416 -80051931 + MER4A LTR ERV1 1 106 -558 * 1582 151 3 77 chr4 122276410 122276782 -80051565 + MER4A LTR ERV1 262 664 0 433 333 8 8 chr4 122277200 122277329 -80051018 - MER5A DNA MER1_type -2 187 59 200 346 8 60 chr4 122277228 122277361 -80050986 + MER5A DNA MER1_type 43 168 -21 * 339 353 199 28 chr4 122279109 122279713 -80048634 + L2 LINE L2 2204 2910 -404 250 100 100 0 chr4 122279693 122279733 -80048614 - L2 LINE L2 -1 3271 3228 * 331 340 91 8 chr4 122279991 122280232 -80048115 + L2 LINE L2 3012 3272 0 181 319 69 96 chr4 122281314 122281574 -80046773 + L2 LINE L2 2901 3153 -119 534 315 51 94 chr4 122281745 122282256 -80046091 + L2 LINE L2 2825 3313 0 2037 153 69 35 chr4 122282482 122282988 -80045359 - MLT2A2 LTR ERVL 0 554 13 1277 224 52 9 chr4 122283588 122283919 -80044428 - L1M LINE L1 -765 5381 5051 * 4918 128 18 1 chr4 122283914 122284560 -80043787 + L1PA14 LINE L1 5379 6042 -119 231 114 0 0 chr4 122284560 122284604 -80043743 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 4918 128 18 1 chr4 122284604 122284725 -80043622 + L1PA14 LINE L1 6042 6159 -2 1146 159 0 34 chr4 122284742 122284950 -80043397 + L1PA16 LINE L1 5963 6163 -3 4265 70 0 28 chr4 122285286 122285856 -80042491 - MER41A LTR ERV1 0 554 1 26 82 0 0 chr4 122286101 122286162 -80042185 + AT_rich Low_complexity Low_complexity 1 61 0 2729 225 63 14 chr4 122286189 122286808 -80041539 + MER82 DNA MER2_type 2 650 -3 236 281 0 0 chr4 122286812 122286869 -80041478 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 191 328 16 0 chr4 122286949 122287013 -80041334 + L2 LINE L2 2403 2467 -847 2419 62 3 0 chr4 122287861 122288181 -80040166 - AluY SINE Alu 0 321 1 4072 168 30 78 chr4 122288563 122289503 -80038844 - MER4D LTR ERV1 -8 895 1 3645 274 82 59 chr4 122290509 122292301 -80036046 + L2 LINE L2 1405 3241 -72 24 53 0 0 chr4 122292317 122292355 -80035992 + AT_rich Low_complexity Low_complexity 1 38 0 979 213 84 45 chr4 122292467 122292829 -80035518 + MSTC LTR MaLR 1 428 0 24 0 0 0 chr4 122292835 122292859 -80035488 + AT_rich Low_complexity Low_complexity 1 24 0 636 147 53 60 chr4 122292948 122293068 -80035279 + LTR23 LTR ERV1 3 123 -314 1568 201 0 23 chr4 122293068 122293376 -80034971 - AluJo SINE Alu -11 301 1 636 147 53 60 chr4 122293376 122293405 -80034942 + LTR23 LTR ERV1 123 151 -286 22 0 0 0 chr4 122293446 122293468 -80034879 + AT_rich Low_complexity Low_complexity 1 22 0 830 106 14 7 chr4 122293512 122293653 -80034694 + LTR23 LTR ERV1 161 302 -135 201 246 123 15 chr4 122293874 122293939 -80034408 + L2 LINE L2 3242 3313 0 295 299 52 0 chr4 122294780 122294877 -80033470 - L2 LINE L2 -13 3300 3199 181 407 49 32 chr4 122295051 122295518 -80032829 + L2 LINE L2 320 794 -2520 2043 147 3 0 chr4 122295771 122296078 -80032269 - AluSx SINE Alu -1 311 4 197 65 32 0 chr4 122297307 122297338 -80031009 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 28 0 0 0 chr4 122299269 122299297 -80029050 + AT_rich Low_complexity Low_complexity 1 28 0 200 300 0 17 chr4 122300770 122300830 -80027517 - L2 LINE L2 0 3313 3255 3096 214 57 46 chr4 122300906 122301207 -80027140 + MER21B LTR ERV1 13 309 -554 414 0 0 0 chr4 122301207 122301253 -80027094 + (CA)n Simple_repeat Simple_repeat 2 47 0 3096 214 57 46 chr4 122301253 122301739 -80026608 + MER21B LTR ERV1 309 809 -54 352 290 37 25 chr4 122301747 122301909 -80026438 - L1MEc LINE L1 -4098 2298 2135 948 289 68 34 chr4 122302013 122302428 -80025919 - L1MEc LINE L1 -5933 463 35 1382 254 62 19 chr4 122302500 122303079 -80025268 - L1MEc LINE L1 -4002 2823 2220 423 0 0 0 chr4 122303085 122303132 -80025215 + (TG)n Simple_repeat Simple_repeat 2 48 0 242 148 0 56 chr4 122303221 122303275 -80025072 + MLT1B LTR MaLR 34 84 -306 * 2325 245 140 64 chr4 122303271 122304284 -80024063 + MER52A LTR ERV1 666 1755 0 1654 192 13 6 chr4 122304286 122304603 -80023744 + MLT1B LTR MaLR 72 390 0 729 278 114 20 chr4 122304609 122305057 -80023290 - L1MEc LINE L1 -4675 2150 1499 524 242 205 18 chr4 122305086 122305417 -80022930 - L1MEc LINE L1 -5218 1607 1215 285 29 0 0 chr4 122305541 122305575 -80022772 + (T)n Simple_repeat Simple_repeat 1 34 0 980 302 42 14 chr4 122305582 122305940 -80022407 - L1MEc LINE L1 -5919 906 539 563 277 133 54 chr4 122306442 122306907 -80021440 + L1M4 LINE L1 3465 3966 -2180 31 0 0 0 chr4 122307290 122307321 -80021026 + AT_rich Low_complexity Low_complexity 1 31 0 1845 113 9 83 chr4 122307712 122308038 -80020309 - AluSx SINE Alu -10 302 1 21 0 0 0 chr4 122308678 122308699 -80019648 + AT_rich Low_complexity Low_complexity 1 21 0 529 130 0 11 chr4 122308756 122308848 -80019499 + L1PB3 LINE L1 6063 6153 -1 181 0 0 65 chr4 122309306 122309337 -80019010 + (TTA)n Simple_repeat Simple_repeat 3 31 0 1759 158 11 7 chr4 122309358 122309637 -80018710 - AluSx SINE Alu -28 284 5 549 279 150 46 chr4 122309700 122310066 -80018281 - MLT1J LTR MaLR -25 486 83 206 309 0 74 chr4 122310224 122310305 -80018042 - L2 LINE L2 -1837 1477 1403 578 367 48 48 chr4 122310309 122310783 -80017564 - L2 LINE L2 -2042 1272 799 3195 113 16 21 chr4 122310787 122311272 -80017075 + LTR22B LTR ERVK 6 488 -4 213 404 6 22 chr4 122311307 122311490 -80016857 - L2 LINE L2 -2509 805 626 370 283 99 57 chr4 122311515 122311727 -80016620 - L2 LINE L2 -2885 429 209 469 304 177 5 chr4 122312197 122312417 -80015930 + MIR SINE MIR 5 262 0 3797 80 201 0 chr4 122312594 122313167 -80015180 - LTR12 LTR ERV1 0 688 1 846 210 116 47 chr4 122313246 122313522 -80014825 - pTR5 LTR ERV1 -1410 1028 734 427 277 79 23 chr4 122313588 122313765 -80014582 + MIR SINE MIR 32 218 -44 857 237 98 70 chr4 122314080 122314624 -80013723 - MER34B LTR ERV1 -6 559 12 1921 114 23 7 chr4 122314741 122315048 -80013299 + L1PA13 LINE L1 5849 6160 -3 490 308 114 45 chr4 122315787 122316164 -80012183 + MER110 LTR ERV1 89 491 0 217 353 49 16 chr4 122317536 122317658 -80010689 + MIR3 SINE MIR 2 127 -81 1594 204 30 6 chr4 122317680 122318013 -80010334 - MER58B DNA MER1_type 0 341 1 690 288 26 4 chr4 122318883 122319112 -80009235 - L1M4 LINE L1 -2456 3690 3457 1313 284 47 6 chr4 122320435 122320949 -80007398 - L1M4 LINE L1 -2456 3690 3156 3982 258 129 16 chr4 122320956 122322280 -80006067 + MSTB2-int LTR MaLR 178 1651 0 1525 190 97 52 chr4 122322286 122322708 -80005639 + MSTB2 LTR MaLR 17 457 0 741 216 97 48 chr4 122322708 122322989 -80005358 + MSTC LTR MaLR 90 428 0 247 250 0 0 chr4 122323052 122323108 -80005239 + L1MA8 LINE L1 5989 6044 -247 395 193 119 2 chr4 122323466 122323620 -80004727 + L1ME4a LINE L1 1171 6110 -6 2537 234 7 15 chr4 122324426 122325019 -80003328 + L1P LINE L1 4507 5094 -1052 1958 124 22 48 chr4 122325021 122325377 -80002970 + L1PA16 LINE L1 5820 6166 0 1430 125 35 42 chr4 122325508 122325796 -80002551 - THE1C LTR MaLR 0 375 90 210 224 0 17 chr4 122326298 122326315 -80002032 + A-rich Low_complexity Low_complexity 2 18 -40 1546 161 3 91 chr4 122326315 122326657 -80001690 + AluJo SINE Alu 1 312 0 210 224 0 17 chr4 122326657 122326678 -80001669 + A-rich Low_complexity Low_complexity 18 38 -20 4010 124 25 5 chr4 122326678 122327309 -80001038 - LTR9B LTR ERV1 0 644 1 210 224 0 17 chr4 122327309 122327327 -80001020 + A-rich Low_complexity Low_complexity 38 58 0 181 156 44 44 chr4 122327456 122327501 -80000846 + L2 LINE L2 3269 3313 0 186 266 127 13 chr4 122329581 122329660 -79998687 - L2 LINE L2 -1 3312 3225 228 302 17 17 chr4 122329822 122329938 -79998409 - L1M4 LINE L1 -1878 4268 4153 1521 259 56 88 chr4 122330007 122330830 -79997517 - L1ME3A LINE L1 0 6104 5308 268 291 234 16 chr4 122330839 122331083 -79997264 - L1ME3A LINE L1 -1103 4977 4681 330 282 119 46 chr4 122331211 122331622 -79996725 - L1ME3A LINE L1 -1549 4531 4091 351 285 51 43 chr4 122331711 122332068 -79996279 - L1MDb LINE L1 -5086 1175 784 373 298 0 0 chr4 122333068 122333162 -79995185 - MER5A DNA MER1_type -87 102 9 6822 165 26 20 chr4 122333680 122335907 -79992440 - L1MA7 LINE L1 -38 6457 4219 6269 248 52 30 chr4 122335883 122336769 -79991578 - L1MA7 LINE L1 -2431 3919 3054 * 2161 112 0 0 chr4 122336769 122337065 -79991282 + AluSx SINE Alu 1 296 -16 6269 248 52 30 chr4 122337065 122340330 -79988017 - L1MA7 LINE L1 -3296 3054 1 226 226 0 19 chr4 122341693 122341746 -79986601 + CT-rich Low_complexity Low_complexity 3 54 0 358 319 29 39 chr4 122343606 122343679 -79984668 + MIR SINE MIR 48 120 -142 1482 199 35 3 chr4 122343679 122343961 -79984386 - AluJb SINE Alu -21 291 1 358 319 29 39 chr4 122343961 122344091 -79984256 + MIR SINE MIR 120 249 -13 1497 211 10 24 chr4 122344828 122345122 -79983225 - AluJo SINE Alu -22 290 1 291 283 57 94 chr4 122345517 122345729 -79982618 + MIR SINE MIR 49 252 -10 439 223 0 0 chr4 122345761 122345855 -79982492 - AluJb SINE Alu -10 302 209 1688 199 6 0 chr4 122345867 122346184 -79982163 + MLT1A1 LTR MaLR 14 332 -33 3011 164 17 82 chr4 122346184 122346330 -79982017 - MER73 LTR ERVL 0 644 490 1852 96 75 41 chr4 122346330 122346623 -79981724 + AluSc SINE Alu 1 303 -6 3011 164 17 82 chr4 122346623 122347133 -79981214 - MER73 LTR ERVL -154 490 31 252 0 0 0 chr4 122347134 122347162 -79981185 + (TCTCCC)n Simple_repeat Simple_repeat 2 29 0 624 369 14 0 chr4 122447194 122447473 -79880874 + ERVL LTR ERVL 4909 5191 -573 830 263 103 57 chr4 122447923 122448330 -79880017 + LTR16A1 LTR ERVL 32 457 0 511 271 124 62 chr4 122448703 122449148 -79879199 + MLT1J LTR MaLR 1 424 -22 238 239 84 28 chr4 122449338 122449409 -79878938 - MER5C DNA MER1_type -248 76 2 371 275 262 0 chr4 122449607 122449756 -79878591 + MIR SINE MIR 3 190 -72 361 256 126 123 chr4 122450206 122450507 -79877840 + L2 LINE L2 3006 3307 -6 496 332 69 14 chr4 122451548 122451765 -79876582 - MIR SINE MIR -1 261 33 2235 120 0 0 chr4 122453451 122453752 -79874595 - AluSg SINE Alu -9 301 1 21 82 0 0 chr4 122454364 122454413 -79873934 + AT_rich Low_complexity Low_complexity 1 49 0 509 294 40 70 chr4 122455390 122455581 -79872766 + MIR3 SINE MIR 14 204 -4 324 102 0 0 chr4 122456036 122456085 -79872262 + (A)n Simple_repeat Simple_repeat 1 49 0 207 0 0 0 chr4 122457344 122457367 -79870980 + (TA)n Simple_repeat Simple_repeat 1 23 0 22 35 0 0 chr4 122457775 122457804 -79870543 + AT_rich Low_complexity Low_complexity 1 29 0 212 277 60 36 chr4 122458182 122458265 -79870082 + L2 LINE L2 3225 3309 -4 21 57 0 0 chr4 122460270 122460305 -79868042 + AT_rich Low_complexity Low_complexity 1 35 0 940 248 14 5 chr4 122461029 122461251 -79867096 - MIR SINE MIR -12 250 27 24 0 0 0 chr4 122461642 122461666 -79866681 + AT_rich Low_complexity Low_complexity 1 24 0 44 20 0 0 chr4 122461793 122461844 -79866503 + AT_rich Low_complexity Low_complexity 1 51 0 691 145 48 0 chr4 122462332 122462456 -79865891 - L1MB3 LINE L1 -8 6175 6046 294 29 0 0 chr4 122463488 122463523 -79864824 + (CA)n Simple_repeat Simple_repeat 2 36 0 17261 180 47 53 chr4 122463526 122467095 -79861252 - ERVL LTR ERVL -345 5419 1874 4309 128 5 37 chr4 122467098 122467125 -79861222 - L1MA3 LINE L1 -1 6304 6278 387 105 0 0 chr4 122467125 122467182 -79861165 + (TA)n Simple_repeat Simple_repeat 2 58 0 4309 128 5 37 chr4 122467182 122467906 -79860441 - L1MA3 LINE L1 -27 6278 5577 26 50 0 0 chr4 122468581 122468621 -79859726 + AT_rich Low_complexity Low_complexity 1 40 0 209 240 240 0 chr4 122470143 122470239 -79858108 + MIR SINE MIR 112 230 -32 * 270 267 41 68 chr4 122470218 122470364 -79857983 + MIR SINE MIR 74 215 -47 240 111 0 0 chr4 122470426 122470462 -79857885 + (TTA)n Simple_repeat Simple_repeat 3 38 0 260 375 150 18 chr4 122470472 122470947 -79857400 + L2 LINE L2 2059 2670 -644 21 0 0 0 chr4 122470947 122470968 -79857379 + AT_rich Low_complexity Low_complexity 1 21 0 260 375 150 18 chr4 122470968 122471150 -79857197 + L2 LINE L2 2670 2826 -488 271 109 62 0 chr4 122471249 122471313 -79857034 + CT-rich Low_complexity Low_complexity 1 180 0 1935 114 4 0 chr4 122471313 122471578 -79856769 - AluSx SINE Alu 0 374 45 190 270 16 32 chr4 122471767 122471830 -79856517 + L2 LINE L2 3176 3237 -76 * 645 342 146 5 chr4 122471812 122472230 -79856117 + L2 LINE L2 2837 3313 0 191 296 0 0 chr4 122472263 122472317 -79856030 + L2 LINE L2 3258 3311 -2 219 328 46 34 chr4 122473331 122473489 -79854858 + MIR SINE MIR 4 156 -64 2030 122 0 7 chr4 122473493 122473779 -79854568 - AluSg SINE Alu -18 292 9 4511 86 0 2 chr4 122474112 122474728 -79853619 - L1PA8 LINE L1 0 6172 5558 2719 71 22 0 chr4 122474728 122475287 -79853060 + L1PA8 LINE L1 5004 5571 -601 227 330 50 0 chr4 122475363 122475463 -79852884 - MIR SINE MIR -121 141 37 22 56 0 0 chr4 122475709 122475745 -79852602 + AT_rich Low_complexity Low_complexity 1 36 0 1650 220 8 16 chr4 122476235 122476603 -79851744 + MLT1A1 LTR MaLR 1 365 0 189 107 0 0 chr4 122476814 122476842 -79851505 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 386 313 85 25 chr4 122477881 122478082 -79850265 - MIR SINE MIR -2 260 48 338 359 8 0 chr4 122478262 122478379 -79849968 - L2 LINE L2 -3 3310 3193 222 149 0 21 chr4 122481249 122481296 -79847051 + (TTTTTA)n Simple_repeat Simple_repeat 3 48 0 293 209 30 0 chr4 122483414 122483481 -79844866 + L1MB1 LINE L1 6088 6156 -12 216 0 0 0 chr4 122483481 122483505 -79844842 + (CA)n Simple_repeat Simple_repeat 2 25 0 1636 131 4 15 chr4 122484084 122484343 -79844004 + AluSq SINE Alu 1 256 -57 428 130 8 53 chr4 122484360 122484491 -79843856 + (GAAA)n Simple_repeat Simple_repeat 4 128 0 316 347 147 6 chr4 122484980 122485150 -79843197 + MIR SINE MIR 19 212 -50 38 51 0 0 chr4 122485193 122485252 -79843095 + AT_rich Low_complexity Low_complexity 1 59 0 1385 122 34 0 chr4 122485453 122485690 -79842657 - L1MA7 LINE L1 0 6291 6047 674 274 22 31 chr4 122485890 122486116 -79842231 + L2 LINE L2 3090 3313 0 335 381 39 64 chr4 122487028 122487309 -79841038 - L2 LINE L2 -2 3270 2997 578 317 82 45 chr4 122487430 122487834 -79840513 - L2 LINE L2 -472 2842 2424 188 374 55 42 chr4 122487891 122488201 -79840146 - L2 LINE L2 -1979 1335 1022 21 36 0 0 chr4 122488357 122488385 -79839962 + AT_rich Low_complexity Low_complexity 1 28 0 1332 267 113 16 chr4 122488920 122489209 -79839138 + L1MCa LINE L1 1098 1358 -5249 215 53 0 53 chr4 122489209 122489247 -79839100 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1332 267 113 16 chr4 122489247 122490069 -79838278 + L1MCa LINE L1 1358 2507 -4100 1381 140 29 75 chr4 122490096 122490375 -79837972 - MER1B DNA MER1_type 0 339 74 340 289 20 7 chr4 122490401 122490553 -79837794 + L1MCa LINE L1 2517 2670 -3756 195 236 73 0 chr4 122490634 122490689 -79837658 + L2 LINE L2 1428 1486 -1828 22 0 0 0 chr4 122492172 122492194 -79836153 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr4 122492530 122492563 -79835784 + AT_rich Low_complexity Low_complexity 1 33 0 1589 153 8 4 chr4 122494374 122494635 -79833712 + AluSx SINE Alu 37 298 -14 37 0 0 0 chr4 122494635 122494672 -79833675 + AT_rich Low_complexity Low_complexity 1 37 0 212 309 119 24 chr4 122494930 122495056 -79833291 - MIR SINE MIR -110 152 15 341 370 7 7 chr4 122496156 122496291 -79832056 + MIR SINE MIR 20 154 -108 282 218 26 0 chr4 122498461 122498539 -79829808 - MER116 DNA Mariner 0 80 1 9468 121 5 3 chr4 122499191 122501414 -79826933 - L1PA8A LINE L1 -1 6130 3899 5426 125 14 3 chr4 122501414 122502186 -79826161 + L1P LINE L1 2998 3782 -2364 452 60 0 0 chr4 122502186 122502249 -79826098 + L1PA2 LINE L1 6087 6153 -2 5426 125 14 3 chr4 122502249 122502367 -79825980 + L1P LINE L1 3782 3897 -2249 23 33 0 0 chr4 122502673 122502703 -79825644 + AT_rich Low_complexity Low_complexity 1 30 0 2343 74 0 7 chr4 122502759 122503058 -79825289 + AluSc SINE Alu 1 297 -12 10356 211 52 20 chr4 122503324 122505590 -79822757 - L1MC1 LINE L1 0 6613 4421 2136 118 0 0 chr4 122505590 122505894 -79822453 - AluY SINE Alu -7 304 1 10356 211 52 20 chr4 122505894 122506845 -79821502 - L1MC1 LINE L1 -2192 4421 3502 1919 177 26 0 chr4 122506845 122507184 -79821163 + MER7A DNA MER2_type 1 346 0 10356 211 52 20 chr4 122507184 122510155 -79818192 - L1MC1 LINE L1 -3111 3502 17 672 322 13 21 chr4 122513683 122513919 -79814428 + MIR SINE MIR 19 252 -10 2176 97 10 0 chr4 122514775 122515064 -79813283 - AluSx SINE Alu -5 307 16 344 277 40 0 chr4 122515090 122515191 -79813156 - L2 LINE L2 -809 2505 2401 950 234 185 3 chr4 122515191 122515520 -79812827 + MLT1B LTR MaLR 1 389 -1 2274 238 177 29 chr4 122515799 122516758 -79811589 + L1MDb LINE L1 22 838 -5568 1532 213 3 10 chr4 122516758 122517068 -79811279 + AluJb SINE Alu 1 308 -4 2274 238 177 29 chr4 122517068 122517628 -79810719 + L1MDb LINE L1 838 1785 -4621 220 111 37 0 chr4 122518301 122518355 -79809992 + (TA)n Simple_repeat Simple_repeat 2 57 0 5031 109 40 9 chr4 122518525 122519333 -79809014 + L1MA2 LINE L1 5472 6304 0 271 223 70 102 chr4 122520060 122520275 -79808072 + MER112 DNA MER1_type 10 217 -43 265 349 120 62 chr4 122520646 122521213 -79807134 + L2 LINE L2 1763 2362 -952 643 226 23 6 chr4 122521213 122521390 -79806957 + L1MA8 LINE L1 6105 6284 -7 202 330 21 99 chr4 122521739 122521972 -79806375 + L2 LINE L2 2753 2967 -347 239 350 58 8 chr4 122522077 122522197 -79806150 + L2 LINE L2 3136 3261 -52 300 333 17 17 chr4 122524656 122524773 -79803574 + MIR SINE MIR 2 118 -144 486 96 0 0 chr4 122525274 122525347 -79803000 + (TG)n Simple_repeat Simple_repeat 2 74 0 184 330 75 38 chr4 122526693 122526799 -79801548 - MIR SINE MIR -125 137 28 286 301 193 1 chr4 122528750 122529013 -79799334 - L2 LINE L2 -16 3256 2929 184 291 63 13 chr4 122529140 122529219 -79799128 + MIR SINE MIR 132 214 -48 774 143 0 0 chr4 122529637 122529756 -79798591 - AluSg/x SINE Alu -14 298 180 21 57 0 0 chr4 122530037 122530072 -79798275 + AT_rich Low_complexity Low_complexity 1 35 0 947 175 13 75 chr4 122530220 122530448 -79797899 + MER20 DNA MER1_type 5 218 -1 244 282 44 61 chr4 122530908 122531089 -79797258 - L2 LINE L2 -142 3171 2994 204 302 57 28 chr4 122531206 122531312 -79797035 - MIR SINE MIR -62 146 38 209 227 0 0 chr4 122533419 122533463 -79794884 + (TTAA)n Simple_repeat Simple_repeat 4 47 0 1053 238 36 0 chr4 122534731 122534954 -79793393 - MLT2B1 LTR ERVL -6 514 284 228 263 18 35 chr4 122535499 122535613 -79792734 + (TA)n Simple_repeat Simple_repeat 2 113 0 643 171 0 9 chr4 122535753 122535864 -79792483 - MLT1C LTR MaLR 0 467 358 872 210 0 6 chr4 122535872 122536048 -79792299 + MER41C LTR ERV1 380 554 0 1454 218 3 10 chr4 122536084 122536391 -79791956 - MLT1C LTR MaLR -162 305 1 256 270 131 29 chr4 122536392 122536529 -79791818 - MIR SINE MIR -61 201 51 285 272 118 50 chr4 122536822 122537023 -79791324 - MLT1K LTR MaLR -26 562 373 180 308 26 26 chr4 122537150 122537228 -79791119 + MIR SINE MIR 185 262 0 21 0 0 0 chr4 122537289 122537310 -79791037 + AT_rich Low_complexity Low_complexity 1 21 0 3550 22 0 0 chr4 122538101 122538517 -79789830 - L1PA2 LINE L1 0 6155 5740 331 304 120 0 chr4 122538901 122539026 -79789321 - MIR SINE MIR -121 141 2 334 228 76 0 chr4 122539855 122539947 -79788400 + L2 LINE L2 3174 3272 0 375 200 89 0 chr4 122540236 122540326 -79788021 + L1MB2 LINE L1 6074 6171 0 263 33 0 0 chr4 122540338 122540368 -79787979 + U6 snRNA snRNA 1 30 -77 361 365 71 62 chr4 122540596 122540702 -79787645 + L2 LINE L2 2895 2999 -273 1798 87 0 8 chr4 122540702 122540944 -79787403 - AluSp SINE Alu -73 240 1 361 365 71 62 chr4 122540944 122541003 -79787344 + L2 LINE L2 2999 3056 -216 2207 75 27 0 chr4 122541003 122541173 -79787174 - AluY SINE Alu -8 303 120 423 0 0 0 chr4 122541173 122541220 -79787127 + (TTA)n Simple_repeat Simple_repeat 3 49 0 2207 75 27 0 chr4 122541220 122541344 -79787003 - AluY SINE Alu -191 120 1 361 365 71 62 chr4 122541344 122541530 -79786817 + L2 LINE L2 3056 3250 -22 476 48 0 0 chr4 122543209 122543271 -79785076 + L1P LINE L1 5117 5178 -968 1941 165 32 20 chr4 122543640 122544045 -79784302 + L1MA8 LINE L1 5876 6285 -6 21 36 0 0 chr4 122544518 122544546 -79783801 + AT_rich Low_complexity Low_complexity 1 28 0 1405 221 10 7 chr4 122544780 122545079 -79783268 + AluJb SINE Alu 1 300 -12 556 239 39 67 chr4 122545419 122545465 -79782882 + L2 LINE L2 645 691 -2623 2478 107 16 16 chr4 122545465 122545838 -79782509 - THE1C LTR MaLR -2 373 1 556 239 39 67 chr4 122545838 122545990 -79782357 + L2 LINE L2 691 837 -2477 1558 229 71 41 chr4 122545990 122546480 -79781867 - MLT1D LTR MaLR 0 505 1 556 239 39 67 chr4 122546480 122546535 -79781812 + L2 LINE L2 837 892 -2422 1441 328 148 6 chr4 122546713 122547575 -79780772 + L2 LINE L2 894 1878 -1436 26 30 0 0 chr4 122547575 122547608 -79780739 + AT_rich Low_complexity Low_complexity 1 33 0 4480 155 21 9 chr4 122547608 122548397 -79779950 - L1PB4 LINE L1 -2 7216 6418 1238 161 0 18 chr4 122548412 122548636 -79779711 - AluSg/x SINE Alu 0 312 93 10400 241 36 53 chr4 122548638 122548778 -79779569 - L1PB4 LINE L1 -816 6392 6251 225 0 0 0 chr4 122548778 122548803 -79779544 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 10400 241 36 53 chr4 122548803 122552357 -79775990 - L1PB4 LINE L1 -957 6251 2770 2175 125 54 20 chr4 122552357 122552709 -79775638 - THE1B LTR MaLR 0 364 1 10400 241 36 53 chr4 122552709 122554300 -79774047 - L1PB4 LINE L1 -4438 2770 1154 439 370 91 17 chr4 122554378 122554970 -79773377 - L1PB4 LINE L1 -6471 738 103 1027 226 52 61 chr4 122554972 122555380 -79772967 - MER110A LTR ERV1 -16 452 49 468 165 22 0 chr4 122555777 122555868 -79772479 + L1MA3 LINE L1 6208 6300 -5 23 0 0 0 chr4 122555878 122555901 -79772446 + AT_rich Low_complexity Low_complexity 1 23 0 486 287 79 4 chr4 122555914 122556193 -79772154 + MER114 LTR ERV 346 645 -3 935 129 0 7 chr4 122556218 122556357 -79771990 + AluSc SINE Alu 146 283 -26 781 190 120 8 chr4 122556382 122556542 -79771805 - L1P5 LINE L1 -684 5472 5331 201 74 0 0 chr4 122556542 122556569 -79771778 + (TTG)n Simple_repeat Simple_repeat 1 27 0 781 190 120 8 chr4 122556569 122556701 -79771646 - L1P5 LINE L1 -825 5331 5156 * 3406 180 9 11 chr4 122556698 122557342 -79771005 + L1PB4 LINE L1 5459 6101 -55 26 50 0 0 chr4 122557355 122557395 -79770952 + AT_rich Low_complexity Low_complexity 1 40 0 282 213 75 0 chr4 122557500 122557580 -79770767 + (CATATA)n Simple_repeat Simple_repeat 4 89 0 38 0 0 0 chr4 122557967 122558005 -79770342 + AT_rich Low_complexity Low_complexity 1 38 0 238 358 119 0 chr4 122559419 122559528 -79768819 + MIR SINE MIR 16 137 -125 2351 81 0 28 chr4 122559572 122559892 -79768455 - AluY SINE Alu 0 311 1 21 0 0 0 chr4 122559898 122559919 -79768428 + AT_rich Low_complexity Low_complexity 1 21 0 1785 179 12 20 chr4 122560354 122560700 -79767647 + MER2 DNA MER2_type 1 343 -1 352 298 15 15 chr4 122561961 122562092 -79766255 - MLT1H LTR MaLR -363 186 56 21 36 0 0 chr4 122562458 122562486 -79765861 + AT_rich Low_complexity Low_complexity 1 28 0 341 265 95 65 chr4 122562793 122562993 -79765354 - MER112 DNA MER1_type 0 260 55 222 283 11 43 chr4 122563559 122563651 -79764696 + MIR SINE MIR 114 202 -60 24 32 0 0 chr4 122565421 122565452 -79762895 + AT_rich Low_complexity Low_complexity 1 31 0 25 83 0 0 chr4 122565684 122565744 -79762603 + AT_rich Low_complexity Low_complexity 1 60 0 228 240 31 73 chr4 122565982 122566078 -79762269 - L2 LINE L2 -1 3312 3221 333 0 0 0 chr4 122566365 122566402 -79761945 + (CA)n Simple_repeat Simple_repeat 2 38 0 38 22 0 0 chr4 122570133 122570178 -79758169 + AT_rich Low_complexity Low_complexity 1 45 0 228 111 0 0 chr4 122573250 122573286 -79755061 + (TG)n Simple_repeat Simple_repeat 1 36 0 27 73 0 0 chr4 122573741 122573796 -79754551 + AT_rich Low_complexity Low_complexity 1 55 0 24 0 0 0 chr4 122573905 122573929 -79754418 + AT_rich Low_complexity Low_complexity 1 24 0 195 238 10 30 chr4 122576177 122576278 -79752069 + T-rich Low_complexity Low_complexity 4 102 0 575 146 31 0 chr4 122576291 122576421 -79751926 + CT-rich Low_complexity Low_complexity 3 136 0 32 26 0 0 chr4 122576780 122576819 -79751528 + AT_rich Low_complexity Low_complexity 1 39 0 342 269 238 44 chr4 122577585 122577812 -79750535 - L2 LINE L2 -12 3301 3031 1447 180 14 35 chr4 122578196 122578485 -79749862 - AluJo SINE Alu -21 291 9 1521 213 40 15 chr4 122578635 122578963 -79749384 - MER2 DNA MER2_type -9 336 1 295 303 10 0 chr4 122578998 122579097 -79749250 + L3 LINE CR1 925 1024 -553 467 342 173 12 chr4 122579401 122579743 -79748604 + L3 LINE CR1 1154 1550 -27 338 327 111 0 chr4 122580256 122580418 -79747929 + MIR SINE MIR 39 218 -44 21 0 0 0 chr4 122581968 122581989 -79746358 + AT_rich Low_complexity Low_complexity 1 21 0 238 281 0 0 chr4 122581999 122582056 -79746291 + MIR SINE MIR 77 133 -75 22 35 0 0 chr4 122582079 122582108 -79746239 + AT_rich Low_complexity Low_complexity 1 29 0 2165 124 3 0 chr4 122582352 122582659 -79745688 + AluSq SINE Alu 1 308 -5 197 395 43 6 chr4 122583623 122583785 -79744562 + L2 LINE L2 1802 1969 -1345 24 0 0 0 chr4 122583798 122583822 -79744525 + AT_rich Low_complexity Low_complexity 1 24 0 185 315 110 0 chr4 122584292 122584365 -79743982 + L2 LINE L2 2447 2527 -787 4987 207 43 38 chr4 122584875 122586356 -79741991 - L1MC1 LINE L1 0 6402 4914 1566 187 0 41 chr4 122586356 122586672 -79741675 + AluJo SINE Alu 3 305 -7 4987 207 43 38 chr4 122586672 122586876 -79741471 - L1MC1 LINE L1 -1488 4914 4713 5434 313 102 29 chr4 122587167 122590097 -79738250 - L2 LINE L2 -55 3258 106 472 273 82 56 chr4 122590251 122590298 -79738049 - L1MC1 LINE L1 -2295 3920 3876 2081 159 156 5 chr4 122590298 122590701 -79737646 - MLT1C LTR MaLR -1 466 3 472 273 82 56 chr4 122590701 122591475 -79736872 - L1MC1 LINE L1 -2339 3876 3078 505 313 66 38 chr4 122591485 122591774 -79736573 - L1MC1 LINE L1 -3248 2967 2655 2395 81 0 0 chr4 122591774 122592071 -79736276 - AluY SINE Alu -6 305 9 505 313 66 38 chr4 122592071 122592288 -79736059 - L1MC1 LINE L1 -3560 2655 2446 335 287 108 23 chr4 122592321 122592721 -79735626 - L1MC1 LINE L1 -3913 2304 1919 336 305 38 67 chr4 122592799 122593009 -79735338 + LTR67 LTR ERVL 5 208 -349 21 0 0 0 chr4 122594925 122594946 -79733401 + AT_rich Low_complexity Low_complexity 1 21 0 259 195 41 3 chr4 122595224 122595306 -79733041 + L1MB1 LINE L1 6087 6168 0 22 35 0 0 chr4 122595306 122595335 -79733012 + AT_rich Low_complexity Low_complexity 1 29 0 218 383 32 21 chr4 122596381 122596475 -79731872 - L2 LINE L2 -201 3071 2977 22 35 0 0 chr4 122597276 122597305 -79731042 + AT_rich Low_complexity Low_complexity 1 29 0 216 205 0 72 chr4 122597758 122597841 -79730506 + A-rich Low_complexity Low_complexity 2 78 0 533 219 28 51 chr4 122599238 122599416 -79728931 + MER112 DNA MER1_type 2 175 -85 2182 137 41 14 chr4 122599469 122599833 -79728514 - THE1C LTR MaLR -1 374 1 9704 121 51 5 chr4 122599839 122601336 -79727011 - THE1C-int LTR MaLR -6 1574 9 2175 128 54 3 chr4 122601344 122601697 -79726650 - THE1C LTR MaLR 0 375 5 1648 184 0 28 chr4 122601787 122602108 -79726239 - AluJo SINE Alu 0 312 1 23 0 0 0 chr4 122604167 122604190 -79724157 + AT_rich Low_complexity Low_complexity 1 23 0 2022 124 0 0 chr4 122604844 122605155 -79723192 + AluSx SINE Alu 1 311 0 28 79 0 0 chr4 122605304 122605367 -79722980 + AT_rich Low_complexity Low_complexity 1 63 0 2045 107 0 42 chr4 122605898 122606208 -79722139 - AluSc SINE Alu -9 300 4 399 171 98 0 chr4 122606248 122606330 -79722017 - THE1C LTR MaLR 0 428 339 358 258 0 0 chr4 122606330 122606419 -79721928 - MST-int LTR MaLR -1172 479 391 1528 129 4 13 chr4 122606447 122606672 -79721675 - AluSg1 SINE Alu -36 273 51 1759 134 3 10 chr4 122606672 122606962 -79721385 - MST-int LTR MaLR -1254 397 110 1168 178 38 5 chr4 122606971 122607184 -79721163 + MSTB LTR MaLR 207 426 0 24 53 0 0 chr4 122607930 122607968 -79720379 + AT_rich Low_complexity Low_complexity 1 38 0 2279 102 3 0 chr4 122609478 122609781 -79718566 - AluSg1 SINE Alu -5 304 1 21 0 0 0 chr4 122611227 122611248 -79717099 + AT_rich Low_complexity Low_complexity 1 21 0 5103 177 43 10 chr4 122611340 122613095 -79715252 - L1MA8 LINE L1 0 6291 4478 428 278 153 0 chr4 122613111 122613320 -79715027 - L1M4c LINE L1 -4894 1490 1250 378 0 0 0 chr4 122613965 122614007 -79714340 + (TG)n Simple_repeat Simple_repeat 1 42 0 2068 132 0 46 chr4 122614134 122614461 -79713886 - AluSx SINE Alu 0 312 1 4536 124 29 9 chr4 122614856 122615396 -79712951 - L1PA13 LINE L1 -146 6017 5454 1697 148 49 4 chr4 122615396 122615660 -79712687 - AluSx SINE Alu -26 286 11 4536 124 29 9 chr4 122615660 122615933 -79712414 - L1PA13 LINE L1 -709 5454 5188 1972 112 3 37 chr4 122616436 122616758 -79711589 - AluY SINE Alu 0 311 1 2526 59 0 0 chr4 122617221 122617541 -79710806 + L1PA5 LINE L1 5835 6154 0 280 346 46 15 chr4 122619765 122619895 -79708452 - MIR SINE MIR -108 154 21 269 307 133 36 chr4 122619916 122620082 -79708265 + MIR SINE MIR 46 227 -35 24 0 0 0 chr4 122621180 122621204 -79707143 + AT_rich Low_complexity Low_complexity 1 24 0 390 308 60 53 chr4 122622544 122622846 -79705501 - L1M4 LINE L1 -749 5397 5094 5850 72 55 29 chr4 122623483 122624348 -79703999 - L1PA7 LINE L1 -3 6151 5264 34 24 0 0 chr4 122624444 122624485 -79703862 + AT_rich Low_complexity Low_complexity 1 41 0 26 30 0 0 chr4 122624703 122624736 -79703611 + AT_rich Low_complexity Low_complexity 1 33 0 216 0 0 0 chr4 122626285 122626309 -79702038 + (TG)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr4 122626368 122626391 -79701956 + AT_rich Low_complexity Low_complexity 1 23 0 208 227 0 0 chr4 122627294 122627338 -79701009 + (CATA)n Simple_repeat Simple_repeat 4 47 0 495 33 0 0 chr4 122627530 122627591 -79700756 + (TG)n Simple_repeat Simple_repeat 1 61 0 338 350 14 0 chr4 122627826 122627966 -79700381 + CT-rich Low_complexity Low_complexity 1 142 0 1579 173 36 4 chr4 122628942 122629220 -79699127 - AluJb SINE Alu -25 287 1 3349 155 10 2 chr4 122629874 122630396 -79697951 - MER1A DNA MER1_type 0 527 2 22 56 0 0 chr4 122630713 122630749 -79697598 + AT_rich Low_complexity Low_complexity 1 36 0 39 60 0 0 chr4 122631140 122631207 -79697140 + AT_rich Low_complexity Low_complexity 1 67 0 205 163 0 47 chr4 122632504 122632529 -79695818 + (TGAA)n Simple_repeat Simple_repeat 1 25 -16 2192 127 52 3 chr4 122632529 122632876 -79695471 - THE1B LTR MaLR 0 364 1 205 163 0 47 chr4 122632876 122632893 -79695454 + (TGAA)n Simple_repeat Simple_repeat 25 41 0 3528 186 9 31 chr4 122633153 122633890 -79694457 + L1MA4 LINE L1 5300 6020 -280 318 200 35 0 chr4 122633901 122633986 -79694361 + L1MB4 LINE L1 6092 6179 -1 190 79 26 26 chr4 122634845 122634883 -79693464 + (TG)n Simple_repeat Simple_repeat 2 39 0 209 280 341 24 chr4 122635458 122635754 -79692593 + L2 LINE L2 839 1228 -2086 612 276 83 45 chr4 122635818 122636130 -79692217 + Charlie2 DNA MER1_type 2 325 -2457 298 206 29 0 chr4 122636137 122636205 -79692142 + Charlie2 DNA MER1_type 1869 1938 -924 1839 111 0 4 chr4 122636348 122636610 -79691737 + AluSx SINE Alu 1 261 -51 463 34 0 0 chr4 122636610 122636669 -79691678 + L1M1 LINE L1 5373 5431 -869 1810 251 97 72 chr4 122636731 122638964 -79689383 - Charlie2a DNA MER1_type -476 2386 73 269 254 116 14 chr4 122639010 122639148 -79689199 - LTR16A1 LTR ERVL -51 406 255 338 317 25 0 chr4 122639238 122639358 -79688989 - LTR16A1 LTR ERVL -334 123 1 314 222 56 32 chr4 122639422 122639548 -79688799 + L2 LINE L2 1582 1710 -1604 340 311 69 102 chr4 122639805 122640168 -79688179 - L1MEd LINE L1 -5451 668 318 548 325 45 19 chr4 122640194 122640462 -79687885 - L1ME LINE L1 -521 5641 5367 313 247 26 52 chr4 122640491 122640645 -79687702 - L1MEd LINE L1 -5272 847 698 323 281 106 25 chr4 122641482 122641642 -79686705 - MIR SINE MIR -12 250 78 24 0 0 0 chr4 122641989 122642013 -79686334 + AT_rich Low_complexity Low_complexity 1 24 0 378 263 26 18 chr4 122642367 122642481 -79685866 + MER119 DNA MER1_type 469 583 0 3315 182 48 26 chr4 122642560 122643247 -79685100 - MER44D DNA MER2_type 0 705 4 232 403 0 0 chr4 122643284 122643356 -79684991 + L2 LINE L2 3196 3267 -5 1611 229 110 68 chr4 122643980 122644669 -79683678 - L1MC5 LINE L1 -571 7390 6673 25 75 0 0 chr4 122645045 122645098 -79683249 + AT_rich Low_complexity Low_complexity 1 53 0 25 51 0 0 chr4 122645206 122645245 -79683102 + AT_rich Low_complexity Low_complexity 1 39 0 195 246 0 0 chr4 122645259 122645316 -79683031 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 21 0 0 0 chr4 122645662 122645683 -79682664 + AT_rich Low_complexity Low_complexity 1 21 0 1607 197 10 13 chr4 122646294 122646593 -79681754 - AluJb SINE Alu -14 298 1 222 291 18 0 chr4 122647157 122647212 -79681135 - L2 LINE L2 0 3272 3217 45 19 0 0 chr4 122648886 122648938 -79679409 + AT_rich Low_complexity Low_complexity 1 52 0 1128 304 91 14 chr4 122650214 122650645 -79677702 - LTR16B LTR ERVL 0 464 1 28 0 0 0 chr4 122650787 122650815 -79677532 + AT_rich Low_complexity Low_complexity 1 28 0 1761 241 51 24 chr4 122650815 122651309 -79677038 - LTR53 LTR ERVL 0 519 13 21 0 0 0 chr4 122651668 122651689 -79676658 + AT_rich Low_complexity Low_complexity 1 21 0 32 81 0 0 chr4 122651763 122651837 -79676510 + AT_rich Low_complexity Low_complexity 1 74 0 1480 142 150 0 chr4 122651878 122652131 -79676216 + AluJb SINE Alu 7 297 -15 237 65 0 0 chr4 122652131 122652162 -79676185 + (TA)n Simple_repeat Simple_repeat 1 31 0 183 80 0 0 chr4 122654026 122654051 -79674296 + (CAA)n Simple_repeat Simple_repeat 2 26 0 189 313 184 41 chr4 122655350 122655497 -79672850 + L2 LINE L2 236 403 -2911 181 313 84 24 chr4 122655772 122655855 -79672492 + MER5A DNA MER1_type 23 110 -79 365 341 110 8 chr4 122655881 122656145 -79672202 + L2 LINE L2 1511 1801 -1513 502 363 55 4 chr4 122656193 122656466 -79671881 + LTR33 LTR ERVL 235 521 0 1940 129 3 23 chr4 122657205 122657508 -79670839 - AluSp SINE Alu -16 297 1 261 83 0 0 chr4 122658813 122658849 -79669498 + (TG)n Simple_repeat Simple_repeat 2 37 0 1210 247 87 11 chr4 122660134 122660502 -79667845 - MSTD LTR MaLR 0 396 1 3956 255 78 33 chr4 122660502 122661704 -79666643 - MSTD-int LTR MaLR 0 1735 480 2350 90 8 54 chr4 122661717 122661772 -79666575 - L1PB1 LINE L1 0 6151 6095 2291 102 3 0 chr4 122661772 122662076 -79666271 - AluSp SINE Alu -8 305 1 2350 90 8 54 chr4 122662076 122662286 -79666061 - L1PB1 LINE L1 -56 6095 5907 2097 154 28 14 chr4 122662286 122662644 -79665703 - THE1B LTR MaLR -1 363 1 2350 90 8 54 chr4 122662644 122662765 -79665582 - L1PB1 LINE L1 -244 5907 5782 312 264 61 0 chr4 122662773 122662921 -79665426 + (TA)n Simple_repeat Simple_repeat 1 157 0 208 299 54 0 chr4 122663270 122663437 -79664910 + (TA)n Simple_repeat Simple_repeat 2 177 0 * 401 236 19 62 chr4 122663396 122663773 -79664574 + (TATATG)n Simple_repeat Simple_repeat 1 360 0 274 118 24 101 chr4 122663826 122663995 -79664352 + (TATATG)n Simple_repeat Simple_repeat 6 161 0 237 158 53 0 chr4 122664011 122664068 -79664279 + (TA)n Simple_repeat Simple_repeat 2 61 0 3696 130 11 8 chr4 122664068 122664818 -79663529 - L1PB1 LINE L1 -356 5795 5048 1818 263 19 8 chr4 122664807 122665290 -79663057 - MSTD-int LTR MaLR -1246 489 2 * 911 232 182 24 chr4 122665291 122665631 -79662716 - MSTD LTR MaLR -2 394 1 21 36 0 0 chr4 122666492 122666520 -79661827 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr4 122666838 122666873 -79661474 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr4 122667126 122667154 -79661193 + AT_rich Low_complexity Low_complexity 1 28 0 294 29 0 0 chr4 122668257 122668292 -79660055 + (CA)n Simple_repeat Simple_repeat 2 36 0 17244 180 47 53 chr4 122668295 122671864 -79656483 - ERVL LTR ERVL -345 5419 1874 201 147 0 0 chr4 122671894 122671928 -79656419 + (TA)n Simple_repeat Simple_repeat 1 34 0 4142 132 10 32 chr4 122671928 122672656 -79655691 - L1MA3 LINE L1 -17 6288 5577 26 50 0 0 chr4 122673331 122673371 -79654976 + AT_rich Low_complexity Low_complexity 1 40 0 4093 44 0 0 chr4 122674580 122675079 -79653268 - L1PA3 LINE L1 0 6155 5657 12093 26 2 0 chr4 122674582 122676781 -79651566 - L1PA3 LINE L1 -2 6153 3952 2998 43 16 0 chr4 122676782 122677157 -79651190 + L1P LINE L1 1852 2232 -3914 209 240 240 0 chr4 122678047 122678143 -79650204 + MIR SINE MIR 112 230 -32 * 275 267 41 68 chr4 122678122 122678268 -79650079 + MIR SINE MIR 74 215 -47 240 111 0 0 chr4 122678330 122678366 -79649981 + (TTA)n Simple_repeat Simple_repeat 3 38 0 247 369 156 24 chr4 122678376 122679054 -79649293 + L2 LINE L2 2059 2826 -488 1959 112 4 0 chr4 122679153 122679485 -79648862 - AluSx SINE Alu 0 377 45 190 270 16 32 chr4 122679674 122679737 -79648610 + L2 LINE L2 3176 3237 -76 * 672 340 146 5 chr4 122679719 122680137 -79648210 + L2 LINE L2 2837 3313 0 191 296 0 0 chr4 122680170 122680224 -79648123 + L2 LINE L2 3258 3311 -2 234 320 46 34 chr4 122681238 122681396 -79646951 + MIR SINE MIR 4 156 -64 2033 126 0 7 chr4 122681400 122681686 -79646661 - AluSg SINE Alu -18 292 9 4506 86 0 2 chr4 122682020 122682636 -79645711 - L1PA8 LINE L1 0 6172 5558 2670 77 22 0 chr4 122682636 122683195 -79645152 + L1PA8 LINE L1 5004 5571 -601 227 330 50 0 chr4 122683271 122683371 -79644976 - MIR SINE MIR -121 141 37 22 56 0 0 chr4 122683617 122683653 -79644694 + AT_rich Low_complexity Low_complexity 1 36 0 1627 223 8 16 chr4 122684143 122684511 -79643836 + MLT1A1 LTR MaLR 1 365 0 189 107 0 0 chr4 122684722 122684750 -79643597 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 418 309 90 30 chr4 122685789 122685990 -79642357 - MIR SINE MIR -2 260 48 338 359 8 0 chr4 122686170 122686287 -79642060 - L2 LINE L2 -3 3310 3193 1814 150 61 28 chr4 122688838 122689199 -79639148 - THE1C LTR MaLR 0 375 3 245 333 33 0 chr4 122689332 122689422 -79638925 - MIR SINE MIR -57 205 113 246 259 59 24 chr4 122690778 122690863 -79637484 - L2 LINE L2 -3 3269 3182 276 208 0 0 chr4 122692621 122692674 -79635673 + MER8 DNA MER2_type 123 175 -64 259 208 13 91 chr4 122692711 122692788 -79635559 - Tigger2 DNA MER2_type -2647 71 1 864 184 37 46 chr4 122692788 122693005 -79635342 + L1MC2 LINE L1 6111 6325 -19 1189 145 92 24 chr4 122693013 122693262 -79635085 + L1MC3 LINE L1 7480 7745 -40 24 67 0 0 chr4 122693382 122693427 -79634920 + AT_rich Low_complexity Low_complexity 1 45 0 492 298 66 60 chr4 122695420 122695722 -79632625 + L2 LINE L2 2454 2757 -557 408 279 73 0 chr4 122695741 122695877 -79632470 + L2 LINE L2 3160 3305 -8 2580 64 0 0 chr4 122696619 122696930 -79631417 + AluY SINE Alu 1 311 0 25 75 0 0 chr4 122697115 122697168 -79631179 + AT_rich Low_complexity Low_complexity 1 53 0 420 20 0 0 chr4 122698453 122698502 -79629845 + (TA)n Simple_repeat Simple_repeat 2 50 0 363 317 144 0 chr4 122699688 122699855 -79628492 + MIR SINE MIR 72 262 0 1889 124 0 35 chr4 122700822 122701156 -79627191 + AluSg SINE Alu 1 324 0 1686 162 133 16 chr4 122701156 122701538 -79626809 - MSTA LTR MaLR -1 427 1 9343 142 6 37 chr4 122701538 122703167 -79625180 - MSTA-int LTR MaLR 0 1580 3 1230 129 46 19 chr4 122703169 122703468 -79624879 - MSTA LTR MaLR 0 375 1 245 356 40 20 chr4 122703813 122703962 -79624385 + MER5A DNA MER1_type 37 188 -1 408 111 0 0 chr4 122704025 122704088 -79624259 + (TTCC)n Simple_repeat Simple_repeat 3 65 0 1183 208 4 32 chr4 122704102 122704352 -79623995 - AluJo SINE Alu -69 243 1 30 27 0 0 chr4 122704415 122704452 -79623895 + AT_rich Low_complexity Low_complexity 1 37 0 2150 132 0 0 chr4 122704613 122704923 -79623424 - AluSq SINE Alu -3 310 1 24 0 0 0 chr4 122705754 122705778 -79622569 + AT_rich Low_complexity Low_complexity 1 24 0 220 257 37 55 chr4 122706037 122706146 -79622201 - L2 LINE L2 -220 3052 2946 334 318 8 8 chr4 122706301 122706427 -79621920 - MIR SINE MIR -13 249 124 409 297 55 14 chr4 122711016 122711161 -79617186 + MIR SINE MIR 4 154 -108 26 0 0 0 chr4 122711211 122711237 -79617110 + AT_rich Low_complexity Low_complexity 1 26 0 651 255 50 49 chr4 122713256 122713506 -79614841 - MIR SINE MIR -8 254 6 24 32 0 0 chr4 122713585 122713616 -79614731 + AT_rich Low_complexity Low_complexity 1 31 0 355 273 90 62 chr4 122714039 122714328 -79614019 + L1ME4a LINE L1 5824 6120 -1 384 215 32 0 chr4 122714949 122715042 -79613305 - MER112 DNA MER1_type -94 166 71 4759 119 28 16 chr4 122715212 122715943 -79612404 + L1PA15 LINE L1 5392 6134 -31 2064 17 0 4 chr4 122715943 122716179 -79612168 - AluYa5 SINE Alu 0 311 77 4759 119 28 16 chr4 122716179 122716206 -79612141 + L1PA15 LINE L1 6134 6159 -6 581 296 24 0 chr4 122716270 122716439 -79611908 - MER5A DNA MER1_type 0 189 17 1308 240 6 45 chr4 122716451 122716805 -79611542 + MER58B DNA MER1_type 2 341 0 901 249 89 0 chr4 122717201 122717426 -79610921 + MIR SINE MIR 13 257 -5 22 0 0 0 chr4 122717487 122717509 -79610838 + AT_rich Low_complexity Low_complexity 1 22 0 221 321 47 11 chr4 122718242 122718369 -79609978 + MIR SINE MIR 16 149 -77 237 306 25 31 chr4 122718993 122719153 -79609194 + (TATATG)n Simple_repeat Simple_repeat 3 161 0 1946 172 17 0 chr4 122720343 122720691 -79607656 + L1MB1 LINE L1 5814 6167 -1 1377 315 44 30 chr4 122720826 122721398 -79606949 - MLT1E LTR MaLR -13 580 1 390 234 204 42 chr4 122721510 122721677 -79606670 + L2 LINE L2 2409 2602 -712 3219 175 39 45 chr4 122721678 122722415 -79605932 - L1MB8 LINE L1 -2 6176 5444 * 5447 249 44 18 chr4 122722413 122724175 -79604172 - L1MB8 LINE L1 -1442 4704 2897 415 296 49 44 chr4 122724171 122724515 -79603832 - L1MEc LINE L1 -4320 2818 2473 * 214 147 0 0 chr4 122724704 122724738 -79603609 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 1729 90 9 0 chr4 122724738 122724961 -79603386 - AluSq SINE Alu -88 225 1 1599 302 54 3 chr4 122724961 122725627 -79602720 - L1MEc LINE L1 -4588 2371 1672 1831 154 123 3 chr4 122725627 122725952 -79602395 + THE1B LTR MaLR 1 364 0 4771 140 24 50 chr4 122725952 122726796 -79601551 + THE1B-int LTR MaLR 1 822 -758 476 138 12 0 chr4 122726809 122726889 -79601458 + THE1B-int LTR MaLR 215 295 -1285 * 1083 92 20 0 chr4 122726879 122727032 -79601315 + THE1B-int LTR MaLR 206 361 -1219 * 5175 107 11 0 chr4 122727031 122727754 -79600593 + THE1B-int LTR MaLR 843 1573 -7 2082 145 39 25 chr4 122727756 122728115 -79600232 + THE1B LTR MaLR 1 364 0 2011 231 88 13 chr4 122728122 122728725 -79599622 - L1MEc LINE L1 -5181 1678 1031 3190 284 25 19 chr4 122728740 122729671 -79598676 - L1MEc LINE L1 -5911 948 13 496 331 19 0 chr4 122729680 122729834 -79598513 + L2 LINE L2 2590 2746 -568 1979 182 53 15 chr4 122730177 122730589 -79597758 - MSTA LTR MaLR 0 428 1 25 0 0 0 chr4 122730975 122731000 -79597347 + AT_rich Low_complexity Low_complexity 1 25 0 263 212 0 45 chr4 122732075 122732141 -79596206 - MIR SINE MIR -63 145 83 264 59 0 0 chr4 122732241 122732275 -79596072 + (A)n Simple_repeat Simple_repeat 1 34 0 545 306 43 47 chr4 122733536 122733771 -79594576 + MIR SINE MIR 29 262 0 305 275 18 9 chr4 122734169 122734278 -79594069 + CT-rich Low_complexity Low_complexity 2 111 0 299 308 103 14 chr4 122734663 122734809 -79593538 + MER58C DNA MER1_type 4 162 -53 334 275 34 106 chr4 122735503 122735739 -79592608 + MLT1J LTR MaLR 100 318 -193 23 86 0 0 chr4 122736027 122736085 -79592262 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr4 122736763 122736785 -79591562 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 122737136 122737157 -79591190 + AT_rich Low_complexity Low_complexity 1 21 0 1239 296 86 25 chr4 122737880 122738359 -79589988 + L2 LINE L2 958 1465 -1849 286 281 0 0 chr4 122738544 122738608 -79589739 - MER91B DNA MER1_type -126 64 1 * 956 273 68 36 chr4 122738608 122739020 -79589327 + L2 LINE L2 2827 3251 -62 280 273 15 0 chr4 122739770 122739836 -79588511 - L2 LINE L2 -5 3308 3242 2188 107 7 0 chr4 122740053 122740351 -79587996 - AluSp SINE Alu -5 308 9 644 350 77 28 chr4 122740755 122741184 -79587163 - LTR33 LTR ERVL -50 471 22 595 304 53 13 chr4 122741371 122741598 -79586749 - MIR SINE MIR -6 256 21 27 49 0 0 chr4 122741618 122741659 -79586688 + AT_rich Low_complexity Low_complexity 1 41 0 269 89 67 11 chr4 122742185 122742275 -79586072 + (TATAA)n Simple_repeat Simple_repeat 5 99 0 38 0 0 0 chr4 122742875 122742913 -79585434 + AT_rich Low_complexity Low_complexity 1 38 0 226 330 116 9 chr4 122742963 122743075 -79585272 + L2 LINE L2 3178 3301 -12 340 305 126 0 chr4 122743982 122744149 -79584198 + MIR SINE MIR 19 206 -56 1021 220 73 0 chr4 122744171 122744444 -79583903 + LTR1B LTR ERV1 1 293 -533 477 192 126 55 chr4 122744511 122744693 -79583654 + LTR1B LTR ERV1 418 612 -214 301 172 52 121 chr4 122744681 122744797 -79583550 + LTR28 LTR ERV1 860 967 -53 * 227 358 106 51 chr4 122746087 122746501 -79581846 + L2 LINE L2 2432 2868 -446 193 128 43 0 chr4 122747913 122747960 -79580387 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 363 271 24 35 chr4 122749283 122749453 -79578894 - Charlie7 DNA MER1_type -1974 638 471 10413 188 35 22 chr4 122749499 122749800 -79578547 - L1MA8 LINE L1 -10 6281 5985 2120 65 0 11 chr4 122749800 122750076 -79578271 - AluY SINE Alu 0 311 39 10413 188 35 22 chr4 122750076 122753028 -79575319 - L1MA8 LINE L1 -306 5985 2984 31 0 0 0 chr4 122753153 122753184 -79575163 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr4 122753983 122754007 -79574340 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 298 149 0 60 chr4 122755170 122755237 -79573110 - MLT2B1 LTR ERVL 0 520 458 603 147 0 0 chr4 122755239 122755341 -79573006 + (TGGA)n Simple_repeat Simple_repeat 3 104 0 1400 239 64 56 chr4 122755341 122755838 -79572509 - MLT2B1 LTR ERVL -19 501 1 291 323 143 26 chr4 122756684 122756873 -79571474 + L3 LINE CR1 618 828 -749 259 331 0 58 chr4 122756903 122757024 -79571323 + L3 LINE CR1 1355 1468 -109 261 0 0 0 chr4 122757138 122757167 -79571180 + (CA)n Simple_repeat Simple_repeat 2 30 0 247 294 87 54 chr4 122757444 122757628 -79570719 + L3b LINE CR1 1390 1579 -4 22 0 0 0 chr4 122759308 122759330 -79569017 + AT_rich Low_complexity Low_complexity 1 22 0 1326 200 3 13 chr4 122759393 122759693 -79568654 - L1MA4 LINE L1 -5 6295 5999 180 152 0 0 chr4 122759915 122759948 -79568399 + T-rich Low_complexity Low_complexity 1 33 0 3891 171 8 17 chr4 122761679 122762391 -79565956 - MER50 LTR ERV1 -28 706 1 298 366 7 14 chr4 122762419 122762561 -79565786 + GA-rich Low_complexity Low_complexity 5 145 0 23 33 0 0 chr4 122764239 122764269 -79564078 + AT_rich Low_complexity Low_complexity 1 30 0 189 220 40 0 chr4 122764430 122764480 -79563867 + L2 LINE L2 3262 3313 0 * 521 314 128 46 chr4 122764477 122765097 -79563250 + L2 LINE L2 2497 3193 -120 1739 164 112 110 chr4 122765477 122765827 -79562520 - MER101B LTR ERV1 -51 519 166 1667 30 0 0 chr4 122765827 122766027 -79562320 - L1PA2 LINE L1 0 6155 5956 1739 164 112 110 chr4 122766027 122766194 -79562153 - MER101B LTR ERV1 -404 166 1 592 308 54 0 chr4 122766447 122766632 -79561715 - MIR SINE MIR -4 258 64 526 116 0 84 chr4 122766758 122766853 -79561494 - FLAM_A SINE Alu -14 128 42 1743 177 36 9 chr4 122767052 122767386 -79560961 - MER2 DNA MER2_type 0 344 2 495 178 0 75 chr4 122767581 122767688 -79560659 + FLAM_C SINE Alu 34 132 -11 576 29 0 0 chr4 122767776 122767846 -79560501 + (CA)n Simple_repeat Simple_repeat 1 70 0 200 204 68 0 chr4 122768479 122768567 -79559780 + CT-rich Low_complexity Low_complexity 3 96 0 3249 116 45 2 chr4 122769911 122770439 -79557908 - L1MA2 LINE L1 0 6304 5754 251 91 0 0 chr4 122770439 122770472 -79557875 + L1MA2 LINE L1 5709 5741 -563 29 0 0 0 chr4 122770528 122770557 -79557790 + AT_rich Low_complexity Low_complexity 1 29 0 186 43 0 0 chr4 122770632 122770655 -79557692 + (T)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr4 122770740 122770761 -79557586 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr4 122771222 122771258 -79557089 + AT_rich Low_complexity Low_complexity 1 36 0 1275 301 98 54 chr4 122772955 122773789 -79554558 - L2 LINE L2 -260 3053 2185 183 139 0 0 chr4 122773937 122773973 -79554374 + (CA)n Simple_repeat Simple_repeat 2 37 0 2782 9 0 9 chr4 122774690 122775005 -79553342 - AluYb8 SINE Alu -6 312 1 25 51 0 0 chr4 122775226 122775265 -79553082 + AT_rich Low_complexity Low_complexity 1 39 0 979 104 181 0 chr4 122776120 122776302 -79552045 + pTR5 LTR ERV1 1807 2021 -417 312 219 31 21 chr4 122776309 122776405 -79551942 + LTR30 LTR ERV1 546 642 -80 2255 101 3 0 chr4 122776405 122776733 -79551614 + pTR5 LTR ERV1 66 394 -2044 37235 33 24 1 chr4 122777476 122782882 -79545465 - L1PA3 LINE L1 -8 6147 617 782 42 0 0 chr4 122782876 122782972 -79545375 - L1PA3 LINE L1 -6048 98 3 * 270 286 174 25 chr4 122782976 122783172 -79545175 - L2 LINE L2 -42 3271 3047 385 280 153 11 chr4 122783497 122783686 -79544661 + L1MC4a LINE L1 6696 6911 -897 25 31 0 0 chr4 122783829 122783861 -79544486 + AT_rich Low_complexity Low_complexity 1 32 0 900 346 113 12 chr4 122784030 122784747 -79543600 - L2 LINE L2 0 3313 2521 207 0 0 0 chr4 122784752 122784775 -79543572 + (T)n Simple_repeat Simple_repeat 1 23 0 753 190 0 54 chr4 122784875 122785059 -79543288 - pTR5 LTR ERV1 -1518 920 747 190 256 23 0 chr4 122785059 122785102 -79543245 - MER5B DNA MER1_type -134 44 1 29 0 0 0 chr4 122785133 122785162 -79543185 + AT_rich Low_complexity Low_complexity 1 29 0 458 282 73 30 chr4 122785840 122786259 -79542088 + L1ME LINE L1 4996 5447 -704 26 74 0 0 chr4 122787604 122787658 -79540689 + AT_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr4 122787872 122787893 -79540454 + AT_rich Low_complexity Low_complexity 1 21 0 2732 13 0 0 chr4 122788399 122788704 -79539643 + AluYa5 SINE Alu 1 305 -6 21 57 0 0 chr4 122788955 122788990 -79539357 + AT_rich Low_complexity Low_complexity 1 35 0 2015 314 117 23 chr4 122789124 122790500 -79537847 - L2 LINE L2 -108 3205 1710 343 215 9 9 chr4 122791376 122791483 -79536864 + (TA)n Simple_repeat Simple_repeat 1 107 0 26 30 0 0 chr4 122791490 122791523 -79536824 + AT_rich Low_complexity Low_complexity 1 33 0 438 167 167 0 chr4 122791547 122791649 -79536698 - L1MA8 LINE L1 -65 6226 6108 224 372 61 17 chr4 122792362 122792491 -79535856 + L2 LINE L2 1826 1967 -1347 1951 156 50 8 chr4 122792491 122792851 -79535496 - THE1C LTR MaLR 0 375 1 224 372 61 17 chr4 122792851 122792901 -79535446 + L2 LINE L2 1967 2013 -1301 5796 149 35 8 chr4 122792906 122793966 -79534381 - Tigger3b DNA MER2_type -139 1092 5 1962 82 14 7 chr4 122794078 122794357 -79533990 - L1PA11 LINE L1 -1 6173 5893 4673 155 22 82 chr4 122794416 122795452 -79532895 - L1MC1 LINE L1 -10 6323 5350 769 116 7 14 chr4 122795488 122795626 -79532721 - L1MA4 LINE L1 -2 6298 6162 1591 139 30 30 chr4 122795626 122795927 -79532420 + L1MA4 LINE L1 5641 5941 -359 785 248 29 8 chr4 122795937 122796175 -79532172 - L1MC1 LINE L1 -774 5372 5130 597 293 235 10 chr4 122796435 122796746 -79531601 + L2 LINE L2 2933 3313 0 1685 258 50 14 chr4 122796758 122797259 -79531088 + LTR40a LTR ERVL 1 519 0 24 53 0 0 chr4 122798777 122798815 -79529532 + AT_rich Low_complexity Low_complexity 1 38 0 14920 200 27 6 chr4 122798815 122804412 -79523935 - L1PB1 LINE L1 -1 6866 991 4517 111 109 125 chr4 122804415 122805843 -79522504 - pTR5 LTR ERV1 0 2438 743 1719 244 109 8 chr4 122805843 122806429 -79521918 - L1PB1 LINE L1 -5869 994 350 1344 154 75 34 chr4 122806429 122806695 -79521652 + AluJo SINE Alu 10 286 -26 231 88 0 0 chr4 122806704 122806738 -79521609 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 21 0 0 0 chr4 122806944 122806965 -79521382 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr4 122807323 122807360 -79520987 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr4 122807741 122807764 -79520583 + AT_rich Low_complexity Low_complexity 1 23 0 244 285 8 8 chr4 122808163 122808293 -79520054 + CT-rich Low_complexity Low_complexity 4 133 0 289 352 78 8 chr4 122809913 122810041 -79518306 + L3 LINE CR1 953 1089 -488 509 189 0 0 chr4 122810899 122810994 -79517353 + AluJ/FLAM SINE Alu 3 97 -215 729 138 0 9 chr4 122811006 122811115 -79517232 + FRAM SINE Alu 20 127 -49 1834 176 0 0 chr4 122811232 122811539 -79516808 + AluJb SINE Alu 1 307 -5 1472 198 0 27 chr4 122811785 122812111 -79516236 - AluJb SINE Alu 0 318 1 5333 167 9 5 chr4 122812663 122813626 -79514721 + L1P5 LINE L1 4170 5142 -1009 2090 128 0 0 chr4 122813626 122813930 -79514417 + AluSx SINE Alu 1 304 -8 5333 167 9 5 chr4 122813930 122814583 -79513764 + L1P5 LINE L1 5142 5791 -360 265 68 27 41 chr4 122814583 122814656 -79513691 + (TA)n Simple_repeat Simple_repeat 1 72 0 311 125 18 0 chr4 122814670 122814726 -79513621 + L1P5 LINE L1 5782 5838 -313 194 78 59 20 chr4 122814726 122814777 -79513570 + (TA)n Simple_repeat Simple_repeat 2 54 0 2125 136 31 0 chr4 122814782 122815134 -79513213 + L1PB1 LINE L1 5783 6145 -6 3625 60 0 0 chr4 122815139 122815625 -79512722 + L1PA6 LINE L1 5685 6170 0 237 108 0 0 chr4 122815661 122815698 -79512649 + (T)n Simple_repeat Simple_repeat 1 37 0 22 35 0 0 chr4 122817080 122817109 -79511238 + AT_rich Low_complexity Low_complexity 1 29 0 446 304 22 17 chr4 122817763 122817944 -79510403 + MIR SINE MIR 70 251 -11 251 106 43 0 chr4 122818225 122818272 -79510075 + (TCTCTG)n Simple_repeat Simple_repeat 4 52 0 365 240 87 51 chr4 122819395 122819591 -79508756 + L1MC5 LINE L1 7598 7800 -161 969 148 0 0 chr4 122820178 122820320 -79508027 + THE1-int LTR MaLR 1001 1142 -438 189 0 0 0 chr4 122820464 122820485 -79507862 + (T)n Simple_repeat Simple_repeat 1 21 0 21 95 0 0 chr4 122821168 122821231 -79507116 + AT_rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chr4 122821625 122821649 -79506698 + AT_rich Low_complexity Low_complexity 1 24 0 404 341 16 0 chr4 122821666 122821789 -79506558 + L3 LINE CR1 934 1058 -519 308 299 114 48 chr4 122822180 122822347 -79506000 - MIR3 SINE MIR -8 200 23 207 139 0 0 chr4 122822409 122822445 -79505902 + (TA)n Simple_repeat Simple_repeat 2 37 0 238 222 0 19 chr4 122823999 122824053 -79504294 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 338 276 97 8 chr4 122824413 122824547 -79503800 + MER110 LTR ERV1 311 456 -35 1245 203 110 21 chr4 122824931 122825266 -79503081 + MLT1A1 LTR MaLR 1 365 0 295 280 122 90 chr4 122825302 122825613 -79502734 + L2 LINE L2 2985 3305 -8 2648 66 0 3 chr4 122826845 122827193 -79501154 - L1PA5 LINE L1 -13 6141 5795 3991 168 54 9 chr4 122827638 122828428 -79499919 - L1MA10 LINE L1 -2 6332 5507 306 0 0 0 chr4 122828607 122828641 -79499706 + (TG)n Simple_repeat Simple_repeat 2 35 0 23 68 0 0 chr4 122829136 122829180 -79499167 + AT_rich Low_complexity Low_complexity 1 44 0 26 50 0 0 chr4 122829309 122829349 -79498998 + AT_rich Low_complexity Low_complexity 1 40 0 438 69 0 0 chr4 122829967 122830025 -79498322 + (TG)n Simple_repeat Simple_repeat 2 59 0 23 0 0 0 chr4 122830111 122830134 -79498213 + AT_rich Low_complexity Low_complexity 1 23 0 284 317 29 19 chr4 122830640 122830744 -79497603 - MIR SINE MIR -60 202 98 523 298 84 28 chr4 122832228 122832443 -79495904 + MLT1K LTR MaLR 360 586 -2 258 378 135 4 chr4 122832949 122833179 -79495168 - L3 LINE CR1 -19 1558 1299 288 308 161 0 chr4 122833279 122833422 -79494925 - L2 LINE L2 -35 3278 3113 309 297 126 19 chr4 122833650 122833880 -79494467 - MIR SINE MIR -6 256 3 344 91 18 0 chr4 122834393 122834448 -79493899 - MADE1 DNA Mariner 0 80 25 186 182 26 13 chr4 122835276 122835353 -79492994 + (TA)n Simple_repeat Simple_repeat 1 78 0 21 0 0 0 chr4 122836348 122836369 -79491978 + AT_rich Low_complexity Low_complexity 1 21 0 36 40 0 0 chr4 122836476 122836526 -79491821 + AT_rich Low_complexity Low_complexity 1 50 0 2209 99 6 0 chr4 122836754 122837078 -79491269 - L1PA13 LINE L1 0 6163 5838 368 381 50 25 chr4 122839652 122839930 -79488417 - L3 LINE CR1 -272 1305 1021 592 310 65 20 chr4 122840234 122840479 -79487868 + MIR SINE MIR 6 261 -1 642 40 20 10 chr4 122840611 122840710 -79487637 + (TCTA)n Simple_repeat Simple_repeat 1 100 0 22 35 0 0 chr4 122841035 122841064 -79487283 + AT_rich Low_complexity Low_complexity 1 29 0 223 323 116 26 chr4 122841512 122841667 -79486680 - MIR SINE MIR -34 228 60 193 337 11 53 chr4 122841789 122841884 -79486463 - MIR3 SINE MIR -26 182 92 22 88 0 0 chr4 122842788 122842845 -79485502 + AT_rich Low_complexity Low_complexity 1 57 0 225 321 94 9 chr4 122843268 122843374 -79484973 - L2 LINE L2 0 3272 3158 906 116 0 0 chr4 122843513 122843651 -79484696 + (GAA)n Simple_repeat Simple_repeat 2 139 0 1373 220 7 3 chr4 122843835 122844117 -79484230 + AluJo SINE Alu 1 283 -29 21 0 0 0 chr4 122845818 122845839 -79482508 + AT_rich Low_complexity Low_complexity 1 21 0 301 299 83 69 chr4 122846157 122846301 -79482046 - MER63A DNA MER1_type -18 192 47 22 35 0 0 chr4 122847342 122847371 -79480976 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr4 122849436 122849460 -79478887 + AT_rich Low_complexity Low_complexity 1 24 0 1223 120 0 30 chr4 122849955 122850155 -79478192 - MER107 DNA MER1_type 0 197 4 23 0 0 0 chr4 122850163 122850186 -79478161 + AT_rich Low_complexity Low_complexity 1 23 0 255 432 34 0 chr4 122850491 122850639 -79477708 + L2 LINE L2 2933 3085 -187 634 122 0 10 chr4 122851657 122851755 -79476592 + MER4A LTR ERV1 1 97 -567 * 1658 114 159 127 chr4 122851752 122852147 -79476200 + MER4A LTR ERV1 257 664 0 200 360 192 0 chr4 122856419 122856544 -79471803 - MIR SINE MIR -10 252 104 180 0 0 0 chr4 122856992 122857012 -79471335 + (T)n Simple_repeat Simple_repeat 1 20 0 270 283 151 0 chr4 122857061 122857167 -79471180 - MER101B LTR ERV1 -439 131 10 711 321 119 36 chr4 122858749 122859285 -79469062 + L2 LINE L2 2418 3054 -259 1585 198 47 146 chr4 122859285 122859862 -79468485 - MLT2B1 LTR ERVL 0 520 1 711 321 119 36 chr4 122859862 122860140 -79468207 + L2 LINE L2 3054 3308 -5 230 358 25 0 chr4 122860383 122860464 -79467883 + L1PA13 LINE L1 925 1007 -6567 398 334 29 37 chr4 122860487 122860796 -79467551 + L1PA13 LINE L1 2203 2441 -5140 444 326 26 43 chr4 122860831 122861061 -79467286 + L1PA13 LINE L1 2395 2620 -4954 * 7923 242 52 12 chr4 122861058 122863331 -79465016 + L1 LINE L1 2718 5081 -1065 948 282 10 43 chr4 122863458 122863811 -79464536 + LTR68 LTR ERV1 297 740 0 21 36 0 0 chr4 122864286 122864314 -79464033 + AT_rich Low_complexity Low_complexity 1 28 0 2061 119 10 0 chr4 122864940 122865235 -79463112 - AluSg SINE Alu -11 299 2 2817 3 0 0 chr4 122865680 122865988 -79462359 + AluYa5 SINE Alu 1 308 -3 2804 307 218 29 chr4 122866869 122867694 -79460653 + L2 LINE L2 617 1285 -2029 1669 182 7 10 chr4 122867694 122867990 -79460357 - AluJo SINE Alu -5 307 13 2804 307 218 29 chr4 122867990 122869130 -79459217 + L2 LINE L2 1285 2954 -360 609 221 119 147 chr4 122869130 122869442 -79458905 - MLT1D LTR MaLR -202 303 1 302 264 0 14 chr4 122869511 122869583 -79458764 + LTR40b LTR ERVL 13 83 -379 * 322 203 0 0 chr4 122869570 122869629 -79458718 + MLT1D LTR MaLR 447 505 0 323 241 36 12 chr4 122869955 122870038 -79458309 - MLT1J2 LTR MaLR -276 174 90 23 0 0 0 chr4 122870775 122870798 -79457549 + AT_rich Low_complexity Low_complexity 1 23 0 311 337 87 16 chr4 122870959 122871143 -79457204 + L2 LINE L2 3116 3312 -1 1761 185 61 6 chr4 122871927 122872273 -79456074 + MLT1A1 LTR MaLR 1 365 0 22 35 0 0 chr4 122872341 122872370 -79455977 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr4 122872902 122872934 -79455413 + AT_rich Low_complexity Low_complexity 1 32 0 2244 41 34 10 chr4 122873182 122873476 -79454871 - L1PA4 LINE L1 -1 6154 5854 284 375 29 7 chr4 122873984 122874120 -79454227 - MIR SINE MIR -109 153 15 799 295 69 18 chr4 122874338 122874693 -79453654 - MLT1G3 LTR MaLR -139 456 1 252 297 22 22 chr4 122874953 122875059 -79453288 + MIR SINE MIR 34 143 -65 206 242 48 16 chr4 122875243 122875305 -79453042 - MIR3 SINE MIR -28 180 117 1896 118 14 10 chr4 122875578 122875867 -79452480 + THE1C-int LTR MaLR 1291 1580 0 1699 132 96 42 chr4 122875867 122876223 -79452124 + THE1C LTR MaLR 1 375 0 236 118 69 29 chr4 122876593 122876688 -79451659 + (TA)n Simple_repeat Simple_repeat 1 102 -4 297 0 0 0 chr4 122876688 122876721 -79451626 + (CA)n Simple_repeat Simple_repeat 2 34 0 236 118 69 29 chr4 122876721 122876727 -79451620 + (TA)n Simple_repeat Simple_repeat 102 106 0 3332 173 32 58 chr4 122876937 122877683 -79450664 - L1PA13 LINE L1 -2185 3961 3235 6568 194 17 3 chr4 122877683 122879868 -79448479 + L1PA13 LINE L1 3964 6163 0 4473 176 33 54 chr4 122879869 122880634 -79447713 + L1MA8 LINE L1 4989 5766 -525 228 176 0 0 chr4 122880634 122880685 -79447662 - LTR66 LTR ERVL -166 444 394 4473 176 33 54 chr4 122880685 122881197 -79447150 + L1MA8 LINE L1 5766 6287 -4 21 36 0 0 chr4 122881237 122881265 -79447082 + AT_rich Low_complexity Low_complexity 1 28 0 1801 138 3 130 chr4 122881556 122881749 -79446598 + MER7A DNA MER2_type 6 123 -2915 3223 140 37 10 chr4 122881749 122882262 -79446085 + MER1A DNA MER1_type 1 527 0 1801 138 3 130 chr4 122882262 122882460 -79445887 + MER7A DNA MER2_type 123 345 -1 9091 220 50 56 chr4 122883581 122884818 -79443529 - L1 LINE L1 -921 5225 3983 1921 175 18 3 chr4 122884818 122885161 -79443186 - MER7A DNA MER2_type 0 346 1 9091 220 50 56 chr4 122885161 122886987 -79441360 - L1 LINE L1 -2163 3983 2179 2726 7 0 0 chr4 122887053 122887351 -79440996 - AluYa5 SINE Alu 0 311 14 31 26 0 0 chr4 122887416 122887454 -79440893 + AT_rich Low_complexity Low_complexity 1 38 0 215 235 44 0 chr4 122887811 122887879 -79440468 + (TA)n Simple_repeat Simple_repeat 2 72 0 404 342 63 40 chr4 122888228 122888450 -79439897 - MLT1J2 LTR MaLR -68 382 156 368 277 85 0 chr4 122888535 122888665 -79439682 - MLT1J2 LTR MaLR -305 145 5 26 0 0 0 chr4 122890071 122890097 -79438250 + AT_rich Low_complexity Low_complexity 1 26 0 216 0 0 0 chr4 122890227 122890251 -79438096 + (TTGG)n Simple_repeat Simple_repeat 2 25 0 988 237 66 2 chr4 122890328 122890740 -79437607 + MER67D LTR ERV1 1 510 -4 186 143 0 0 chr4 122891165 122891200 -79437147 + (TC)n Simple_repeat Simple_repeat 1 35 0 249 33 0 0 chr4 122891200 122891230 -79437117 + (TG)n Simple_repeat Simple_repeat 1 30 0 191 35 0 35 chr4 122891778 122891807 -79436540 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 443 237 0 0 chr4 122892130 122892227 -79436120 + L1ME3A LINE L1 5809 5905 -265 1391 257 51 5 chr4 122892262 122892671 -79435676 + L1ME3A LINE L1 5679 6106 -64 291 28 0 0 chr4 122893679 122893715 -79434632 + (CA)n Simple_repeat Simple_repeat 2 37 0 207 114 0 0 chr4 122893787 122893822 -79434525 + (TC)n Simple_repeat Simple_repeat 1 35 0 234 62 0 0 chr4 122893832 122893864 -79434483 + (GA)n Simple_repeat Simple_repeat 1 32 0 268 351 104 39 chr4 122895547 122895778 -79432569 + MIR SINE MIR 17 262 0 25 0 0 0 chr4 122895861 122895886 -79432461 + AT_rich Low_complexity Low_complexity 1 25 0 31 68 0 0 chr4 122896000 122896059 -79432288 + AT_rich Low_complexity Low_complexity 1 59 0 24 0 0 0 chr4 122896400 122896424 -79431923 + AT_rich Low_complexity Low_complexity 1 24 0 268 324 134 0 chr4 122896960 122897102 -79431245 + MIR SINE MIR 46 206 -56 30 27 0 0 chr4 122897895 122897932 -79430415 + AT_rich Low_complexity Low_complexity 1 37 0 1530 232 44 34 chr4 122898138 122898547 -79429800 + L1MD2 LINE L1 20 432 -6108 228 270 135 0 chr4 122898573 122898662 -79429685 + L1MD2 LINE L1 507 607 -5933 1391 210 228 24 chr4 122898762 122899337 -79429010 + L1MD2 LINE L1 996 1687 -4853 * 1501 240 33 85 chr4 122899336 122899692 -79428655 + L1MD2 LINE L1 3683 3975 -2565 1253 241 59 70 chr4 122899692 122900164 -79428183 - MLT1C LTR MaLR 0 467 1 1501 240 33 85 chr4 122900164 122900575 -79427772 + L1MD2 LINE L1 3975 4406 -2134 261 244 115 0 chr4 122900638 122900716 -79427631 + L1MD2 LINE L1 6182 6268 -292 462 281 56 34 chr4 122900755 122900933 -79427414 + L1MD2 LINE L1 6344 6525 -228 435 19 0 0 chr4 122900933 122900985 -79427362 + (CA)n Simple_repeat Simple_repeat 1 52 0 322 282 25 18 chr4 122900994 122901139 -79427208 + L1MD2 LINE L1 6082 6267 -14 1072 258 59 40 chr4 122901479 122902100 -79426247 - L1MDa LINE L1 -3491 3049 2430 1711 153 57 129 chr4 122902902 122903152 -79425195 - MSTB LTR MaLR 0 426 222 2325 84 0 3 chr4 122903152 122903451 -79424896 + AluY SINE Alu 1 298 -13 1711 153 57 129 chr4 122903451 122903657 -79424690 - MSTB LTR MaLR -204 222 3 2042 189 84 13 chr4 122903659 122904113 -79424234 - MSTB-int LTR MaLR 0 1651 1166 3303 206 32 6 chr4 122904134 122904857 -79423490 - MSTB-int LTR MaLR -928 723 1 823 182 128 11 chr4 122905250 122905437 -79422910 + MER2 DNA MER2_type 1 209 -136 4431 190 33 14 chr4 122905477 122907217 -79421130 - L1PB4 LINE L1 0 6858 5090 1886 227 31 14 chr4 122907226 122907555 -79420792 - L1PB4 LINE L1 -2301 4547 4204 258 32 0 0 chr4 122907555 122907586 -79420761 + (TTG)n Simple_repeat Simple_repeat 1 31 0 1886 227 31 14 chr4 122907586 122907812 -79420535 - L1PB4 LINE L1 -2644 4204 3983 774 258 23 46 chr4 122907809 122908069 -79420278 - L1PB4 LINE L1 -6586 263 10 * 23 0 0 0 chr4 122908078 122908101 -79420246 + AT_rich Low_complexity Low_complexity 1 23 0 323 197 16 16 chr4 122908101 122908162 -79420185 + MER2 DNA MER2_type 278 338 -7 23 54 0 0 chr4 122908737 122908774 -79419573 + AT_rich Low_complexity Low_complexity 1 37 0 599 315 110 29 chr4 122909304 122909749 -79418598 + L1MEd LINE L1 602 1082 -5037 641 114 0 0 chr4 122909751 122909856 -79418491 + AluY SINE Alu 207 311 0 408 275 78 6 chr4 122909911 122910078 -79418269 + L1MEd LINE L1 1187 1365 -4945 2177 187 44 34 chr4 122910087 122910153 -79418194 - L1MA9 LINE L1 -8 6304 6240 297 0 0 0 chr4 122910153 122910186 -79418161 + (TA)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr4 122910185 122910208 -79418139 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 2177 187 44 34 chr4 122910186 122910644 -79417703 - L1MA9 LINE L1 -72 6240 5797 225 93 0 47 chr4 122910692 122910735 -79417612 - L1MA9 LINE L1 -517 5788 5748 2295 85 0 0 chr4 122910735 122911028 -79417319 - AluY SINE Alu -18 293 1 365 335 60 19 chr4 122912100 122912419 -79415928 + L1ME LINE L1 1029 1360 -5012 249 317 63 7 chr4 122912436 122912578 -79415769 + L1ME LINE L1 1262 1411 -4973 326 264 60 48 chr4 122913227 122913321 -79415026 + L1MC5 LINE L1 7628 7726 -235 1877 87 0 0 chr4 122913321 122913563 -79414784 - AluY SINE Alu -6 305 64 326 264 60 48 chr4 122913563 122913635 -79414712 + L1MC5 LINE L1 7726 7796 -165 504 0 0 0 chr4 122913648 122913704 -79414643 + (TTTTA)n Simple_repeat Simple_repeat 5 60 0 601 154 8 57 chr4 122913704 122913827 -79414520 - AluJb SINE Alu -195 117 1 251 345 0 0 chr4 122913828 122913944 -79414403 + L1ME3 LINE L1 6047 6162 0 516 282 87 30 chr4 122913956 122914812 -79413535 + L1ME LINE L1 4912 5827 -579 2024 120 0 3 chr4 122914812 122915104 -79413243 + AluSc SINE Alu 1 291 -18 516 282 87 30 chr4 122915104 122915164 -79413183 + L1ME LINE L1 5827 5882 -524 936 308 55 2 chr4 122915252 122915652 -79412695 - L1ME3A LINE L1 -112 6058 5638 928 304 126 51 chr4 122916371 122917007 -79411340 - L2 LINE L2 -569 2745 2028 375 23 0 0 chr4 122917007 122917051 -79411296 + (TAA)n Simple_repeat Simple_repeat 2 45 0 928 304 126 51 chr4 122917051 122917264 -79411083 - L2 LINE L2 -1286 2028 1832 240 261 63 0 chr4 122917338 122917449 -79410898 + L1MEd LINE L1 69 186 -5933 1538 201 3 23 chr4 122917774 122918082 -79410265 + AluJo SINE Alu 2 303 -9 521 266 60 70 chr4 122918239 122918642 -79409705 + L1M4 LINE L1 4447 4845 -1301 299 348 100 0 chr4 122918863 122919073 -79409274 - L2 LINE L2 -1483 1831 1601 396 154 0 21 chr4 122919624 122919723 -79408624 - FRAM/FAM SINE Alu -89 77 20 278 232 73 12 chr4 122919893 122919975 -79408372 + MLT1I LTR MaLR 319 405 -4 25 0 0 0 chr4 122920210 122920235 -79408112 + AT_rich Low_complexity Low_complexity 1 25 0 26 74 0 0 chr4 122921453 122921507 -79406840 + AT_rich Low_complexity Low_complexity 1 54 0 303 300 93 36 chr4 122921566 122921706 -79406641 + HAL1 LINE L1 3 150 -2357 503 267 112 43 chr4 122922125 122922500 -79405847 + HAL1 LINE L1 740 1140 -1367 511 311 106 28 chr4 122923130 122923603 -79404744 - L1M4 LINE L1 -2912 3234 2725 402 57 0 0 chr4 122923785 122923838 -79404509 + (TA)n Simple_repeat Simple_repeat 2 54 0 2284 74 0 0 chr4 122923917 122924214 -79404133 + AluY SINE Alu 1 297 -14 21 82 0 0 chr4 122924449 122924498 -79403849 + AT_rich Low_complexity Low_complexity 1 49 0 25 51 0 0 chr4 122925175 122925214 -79403133 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr4 122925293 122925322 -79403025 + AT_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr4 122925523 122925553 -79402794 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr4 122925730 122925755 -79402592 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr4 122925948 122925982 -79402365 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr4 122926019 122926042 -79402305 + AT_rich Low_complexity Low_complexity 1 23 0 43 47 0 0 chr4 122927425 122927489 -79400858 + AT_rich Low_complexity Low_complexity 1 64 0 364 168 45 45 chr4 122927508 122927687 -79400660 + (TA)n Simple_repeat Simple_repeat 2 180 0 54 40 0 0 chr4 122927692 122927767 -79400580 + AT_rich Low_complexity Low_complexity 1 75 0 270 0 0 0 chr4 122928363 122928393 -79399954 + (A)n Simple_repeat Simple_repeat 1 30 0 388 335 72 36 chr4 122928735 122928956 -79399391 + MIR SINE MIR 32 260 -2 253 379 14 21 chr4 122929112 122929257 -79399090 - MIR3 SINE MIR -44 164 21 601 350 56 18 chr4 122929436 122929827 -79398520 + ERVL LTR ERVL 2188 2593 -3171 249 303 138 21 chr4 122930729 122930874 -79397473 + LTR16C LTR ERVL 167 328 -163 240 273 0 0 chr4 122930904 122930959 -79397388 + CT-rich Low_complexity Low_complexity 2 56 0 26 0 0 0 chr4 122931405 122931431 -79396916 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr4 122933365 122933392 -79394955 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr4 122933511 122933532 -79394815 + AT_rich Low_complexity Low_complexity 1 21 0 2003 183 35 10 chr4 122934642 122935003 -79393344 + MLT2D LTR ERVL 1 375 -39 491 0 17 0 chr4 122935003 122935062 -79393285 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 2003 183 35 10 chr4 122935062 122935104 -79393243 + MLT2D LTR ERVL 375 414 0 487 272 144 26 chr4 122935193 122935388 -79392959 - MIR SINE MIR -38 224 7 340 308 92 38 chr4 122937196 122937436 -79390911 + MIR SINE MIR 6 258 -4 294 259 59 0 chr4 123037505 123037590 -79290757 - MIR SINE MIR -106 156 67 1420 267 124 22 chr4 123037590 123038219 -79290128 + MER115 DNA AcHobo 1 693 0 303 263 42 0 chr4 123038500 123038582 -79289765 + MIR SINE MIR 49 137 -71 322 303 90 26 chr4 123041555 123041789 -79286558 - MIR SINE MIR -2 260 12 228 67 0 0 chr4 123042476 123042506 -79285841 + (CA)n Simple_repeat Simple_repeat 1 30 0 2131 118 64 14 chr4 123042887 123043244 -79285103 + THE1C LTR MaLR 1 375 0 301 257 59 26 chr4 123043320 123043472 -79284875 + L1M4 LINE L1 4490 4646 -1500 1433 160 0 8 chr4 123043472 123043716 -79284631 - AluJo SINE Alu -16 296 55 182 265 0 0 chr4 123044459 123044508 -79283839 + L2 LINE L2 3265 3313 0 213 175 0 0 chr4 123044508 123044548 -79283799 + (CGAA)n Simple_repeat Simple_repeat 2 41 0 192 77 0 0 chr4 123044607 123044633 -79283714 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 195 129 0 0 chr4 123045008 123045039 -79283308 + (T)n Simple_repeat Simple_repeat 1 31 0 1353 175 51 16 chr4 123045679 123045936 -79282411 - AluJo SINE Alu -36 276 11 261 0 0 0 chr4 123046563 123046592 -79281755 + (T)n Simple_repeat Simple_repeat 1 29 0 1583 195 21 6 chr4 123046592 123047056 -79281291 - L1MC/D LINE L1 -743 5403 5084 222 62 0 0 chr4 123048122 123048154 -79280193 + (T)n Simple_repeat Simple_repeat 1 32 0 988 187 79 46 chr4 123048315 123048590 -79279757 + L1MC3 LINE L1 6127 6332 -12 2233 102 7 7 chr4 123048591 123048895 -79279452 + AluSg SINE Alu 1 304 -6 22 35 0 0 chr4 123048899 123048928 -79279419 + AT_rich Low_complexity Low_complexity 1 29 0 393 22 0 0 chr4 123049226 123049272 -79279075 + (CA)n Simple_repeat Simple_repeat 2 47 0 1418 309 164 30 chr4 123049981 123050365 -79277982 + L2 LINE L2 1612 1943 -1371 2054 125 0 7 chr4 123050365 123050670 -79277677 - AluSx SINE Alu -9 303 1 1418 309 164 30 chr4 123050670 123051113 -79277234 + L2 LINE L2 1943 2550 -764 1646 241 43 14 chr4 123051595 123052219 -79276128 + L1MB8 LINE L1 5464 6177 -1 324 251 26 58 chr4 123052495 123052672 -79275675 - MLT1G1 LTR MaLR 0 590 395 516 314 25 42 chr4 123052728 123053064 -79275283 - MLT1G1 LTR MaLR -306 284 3 25 83 0 0 chr4 123053658 123053718 -79274629 + AT_rich Low_complexity Low_complexity 1 60 0 272 139 0 0 chr4 123053985 123054028 -79274319 - L1MEc LINE L1 -4114 2282 2240 315 0 0 0 chr4 123054229 123054264 -79274083 + (CA)n Simple_repeat Simple_repeat 2 36 0 205 161 0 0 chr4 123054272 123054303 -79274044 + polypurine Low_complexity Low_complexity 1 31 0 263 204 0 0 chr4 123054668 123054722 -79273625 + L1MC4 LINE L1 6650 6703 -1339 547 283 124 17 chr4 123054782 123055015 -79273332 - MIR SINE MIR -1 261 4 252 233 27 27 chr4 123055458 123055531 -79272816 + GA-rich Low_complexity Low_complexity 1 73 0 231 339 137 13 chr4 123056204 123056431 -79271916 - L2 LINE L2 -557 2757 2503 2376 70 0 7 chr4 123056639 123056938 -79271409 + AluY SINE Alu 1 297 -14 21 36 0 0 chr4 123057578 123057606 -79270741 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 123058368 123058392 -79269955 + AT_rich Low_complexity Low_complexity 1 24 0 2435 181 11 32 chr4 123058497 123059033 -79269314 - L1MA5 LINE L1 -1 6299 5775 198 0 0 0 chr4 123059268 123059290 -79269057 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 526 274 99 92 chr4 123059503 123059915 -79268432 - LTR68 LTR ERV1 -320 420 6 326 354 6 25 chr4 123060223 123060384 -79267963 - L2 LINE L2 -725 2589 2432 250 295 125 9 chr4 123061092 123061204 -79267143 - MIR SINE MIR -62 200 76 315 0 0 0 chr4 123061923 123061958 -79266389 + (CA)n Simple_repeat Simple_repeat 2 36 0 26 30 0 0 chr4 123062385 123062418 -79265929 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4 123062506 123062534 -79265813 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr4 123064078 123064101 -79264246 + (CTA)n Simple_repeat Simple_repeat 1 23 0 544 258 31 83 chr4 123064730 123064801 -79263546 - L1M4 LINE L1 -939 5207 5134 2215 90 3 0 chr4 123064801 123065091 -79263256 - AluY SINE Alu -20 291 1 544 258 31 83 chr4 123065091 123065126 -79263221 - L1M4 LINE L1 -1012 5134 5099 1906 105 77 7 chr4 123065126 123065412 -79262935 - AluSx SINE Alu 0 312 7 544 258 31 83 chr4 123065412 123065727 -79262620 - L1M4 LINE L1 -1047 5099 4807 738 302 95 7 chr4 123065750 123066161 -79262186 + L1ME2 LINE L1 5709 6155 -9 806 231 164 35 chr4 123066493 123066779 -79261568 - MER58B DNA MER1_type -18 323 1 1911 117 0 11 chr4 123066883 123067157 -79261190 + AluSq SINE Alu 37 307 -6 3270 115 8 2 chr4 123067415 123067921 -79260426 - L1PA13 LINE L1 0 6163 5655 8026 176 27 16 chr4 123067924 123069500 -79258847 - L1PA13 LINE L1 -865 5281 3688 504 320 62 67 chr4 123070006 123070615 -79257732 + L2 LINE L2 1758 2363 -951 260 279 118 37 chr4 123071156 123071292 -79257055 + L2 LINE L2 3167 3313 0 450 127 0 0 chr4 123072124 123072195 -79256152 + (TA)n Simple_repeat Simple_repeat 2 72 0 237 301 65 88 chr4 123072494 123072790 -79255557 + L2 LINE L2 2872 3271 -1 23 0 0 0 chr4 123073873 123073896 -79254451 + AT_rich Low_complexity Low_complexity 1 23 0 779 282 62 37 chr4 123075192 123075593 -79252754 - MER92A LTR ERV1 0 412 2 458 125 12 0 chr4 123075630 123075710 -79252637 + (GGGA)n Simple_repeat Simple_repeat 4 84 0 2126 111 0 13 chr4 123075786 123076101 -79252246 + AluY SINE Alu 1 311 0 2251 88 3 3 chr4 123076101 123076406 -79251941 + AluSc SINE Alu 1 305 -4 1067 169 0 0 chr4 123076496 123076662 -79251685 + AluJb SINE Alu 1 166 -146 1069 292 114 23 chr4 123078357 123078881 -79249466 - MER97a DNA MER1_type? -322 572 1 339 25 0 0 chr4 123079405 123079445 -79248902 + (TG)n Simple_repeat Simple_repeat 2 41 0 336 374 6 24 chr4 123081362 123081528 -79246819 + MIR SINE MIR 39 201 -61 313 296 106 23 chr4 123081518 123081650 -79246697 - L2 LINE L2 0 3313 3171 * 14459 105 15 8 chr4 123082079 123084318 -79244029 + L1PA7 LINE L1 3300 5555 -596 5059 92 6 6 chr4 123084318 123085024 -79243323 + L1PA7 LINE L1 5448 6154 0 14459 105 15 8 chr4 123085024 123085087 -79243260 + L1PA7 LINE L1 5555 5616 -535 937 350 59 30 chr4 123085087 123085695 -79242652 - L2 LINE L2 -654 2660 2035 240 301 14 0 chr4 123085903 123085976 -79242371 - MIR SINE MIR -27 235 162 2218 67 7 3 chr4 123086788 123087110 -79241237 - AluY SINE Alu 0 323 1 383 255 11 0 chr4 123088477 123088571 -79239776 - L1PA16 LINE L1 0 6166 6072 22 0 0 0 chr4 123088857 123088879 -79239468 + AT_rich Low_complexity Low_complexity 1 22 0 43 56 0 0 chr4 123091527 123091598 -79236749 + AT_rich Low_complexity Low_complexity 1 71 0 312 335 60 37 chr4 123092353 123092568 -79235779 - L2 LINE L2 -469 2845 2626 1391 274 40 9 chr4 123092649 123093094 -79235253 - MLT1C LTR MaLR -8 459 1 455 245 69 88 chr4 123093891 123094197 -79234150 - MER20B DNA MER1_type -292 491 192 766 311 81 24 chr4 123094249 123094667 -79233680 + L1MEc LINE L1 36 477 -5919 457 133 12 0 chr4 123095404 123095487 -79232860 + L1MA4 LINE L1 6211 6294 -6 933 299 158 17 chr4 123095522 123096366 -79231981 + L1M4 LINE L1 3704 4666 -1480 4105 124 91 41 chr4 123096366 123097705 -79230642 - pTR5 LTR ERV1 0 2606 1524 468 297 110 30 chr4 123097706 123097969 -79230378 + L1M4 LINE L1 4664 4947 -1199 1339 162 144 78 chr4 123099110 123099548 -79228799 + MLT1C LTR MaLR 1 467 0 733 197 46 0 chr4 123099805 123099957 -79228390 - MER105 DNA DNA -45 159 1 401 302 0 0 chr4 123101279 123101385 -79226962 + L2 LINE L2 3208 3313 0 226 205 0 0 chr4 123101901 123101940 -79226407 + (TG)n Simple_repeat Simple_repeat 2 40 0 386 324 113 9 chr4 123101940 123102153 -79226194 + MIR SINE MIR 14 248 -14 1442 163 115 81 chr4 123102889 123102942 -79225405 + MSTB1 LTR MaLR 1 51 -381 1496 115 5 9 chr4 123102942 123103160 -79225187 + AluSp SINE Alu 85 301 -12 1442 163 115 81 chr4 123103160 123103320 -79225027 + MSTB1 LTR MaLR 51 204 -228 231 36 0 0 chr4 123103320 123103348 -79224999 + (TC)n Simple_repeat Simple_repeat 1 28 0 1442 163 115 81 chr4 123103348 123103551 -79224796 + MSTB1 LTR MaLR 204 432 0 22 0 0 0 chr4 123104298 123104320 -79224027 + AT_rich Low_complexity Low_complexity 1 22 0 33 56 0 0 chr4 123105309 123105363 -79222984 + AT_rich Low_complexity Low_complexity 1 54 0 25 31 0 0 chr4 123106098 123106130 -79222217 + AT_rich Low_complexity Low_complexity 1 32 0 31 26 0 0 chr4 123106562 123106600 -79221747 + AT_rich Low_complexity Low_complexity 1 38 0 30 0 0 0 chr4 123107244 123107274 -79221073 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr4 123107798 123107840 -79220507 + AT_rich Low_complexity Low_complexity 1 42 0 892 163 13 7 chr4 123107840 123107993 -79220354 - FRAM SINE Alu -23 153 1 961 122 0 0 chr4 123108674 123108805 -79219542 - AluY SINE Alu -179 132 2 2890 170 17 6 chr4 123109053 123109588 -79218759 - L1MC1 LINE L1 0 6333 5793 205 206 16 16 chr4 123109895 123109958 -79218389 + (TG)n Simple_repeat Simple_repeat 2 64 0 194 329 58 44 chr4 123111041 123111178 -79217169 - L2 LINE L2 -971 2343 2205 365 361 27 46 chr4 123111398 123111661 -79216686 - MER68 LTR ERV1 0 562 305 330 232 53 0 chr4 123112021 123112116 -79216231 + MER94 DNA DNA 1 100 -34 1397 201 51 56 chr4 123113283 123113675 -79214672 + MLT1B LTR MaLR 1 390 0 221 238 38 0 chr4 123113787 123113867 -79214480 + (TA)n Simple_repeat Simple_repeat 2 84 0 288 0 0 0 chr4 123114823 123114855 -79213492 + (T)n Simple_repeat Simple_repeat 1 32 0 4529 178 69 24 chr4 123115356 123116311 -79212036 - L1MCa LINE L1 -5409 1017 20 627 225 266 67 chr4 123116311 123116729 -79211618 - Charlie1a DNA MER1_type -950 505 5 267 103 0 0 chr4 123118168 123118207 -79210140 + (CA)n Simple_repeat Simple_repeat 2 40 0 232 159 32 95 chr4 123118293 123118356 -79209991 + MLT1I LTR MaLR 107 165 -244 4366 147 25 1 chr4 123118843 123119530 -79208817 - MER50 LTR ERV1 -23 711 9 330 290 6 68 chr4 123121427 123121603 -79206744 + L1ME LINE L1 358 522 -5850 389 238 45 56 chr4 123121771 123122355 -79205992 + L1ME LINE L1 764 1378 -4994 577 313 90 39 chr4 123122360 123122952 -79205395 + L1ME LINE L1 1288 1987 -4436 1810 137 118 12 chr4 123122990 123123312 -79205035 - THE1B LTR MaLR 0 364 9 9586 122 33 37 chr4 123123318 123124903 -79203444 - THE1B-int LTR MaLR 0 1580 1 2069 151 52 0 chr4 123124905 123125249 -79203098 - THE1B LTR MaLR -2 362 1 411 210 74 56 chr4 123125966 123126128 -79202219 + LTR45B LTR ERV1 324 488 -1 725 357 8 8 chr4 123126130 123126494 -79201853 + L1MC/D LINE L1 56 419 -5977 455 288 21 11 chr4 123126506 123126697 -79201650 + L1MC/D LINE L1 2318 2510 -3705 2062 169 53 13 chr4 123126721 123127117 -79201230 + Tigger2 DNA MER2_type 2307 2718 0 822 266 102 21 chr4 123127245 123127866 -79200481 + L1MC/D LINE L1 5055 5725 -743 818 321 62 12 chr4 123128711 123129134 -79199213 + ERVL LTR ERVL 2147 2590 -3174 2150 72 14 3 chr4 123129632 123129923 -79198424 + L1PA7 LINE L1 5861 6154 0 587 365 108 31 chr4 123130113 123130565 -79197782 + L2 LINE L2 6 492 -2822 471 113 0 12 chr4 123130569 123130649 -79197698 - L1PA5 LINE L1 0 6154 6076 1286 70 5 27 chr4 123130660 123130846 -79197501 - L1PA4 LINE L1 -35 6120 5939 207 225 0 0 chr4 123130963 123131003 -79197344 + A-rich Low_complexity Low_complexity 1 40 0 235 210 48 16 chr4 123131026 123131088 -79197259 - L1M4 LINE L1 -1593 5364 5301 648 267 27 90 chr4 123131110 123131410 -79196937 - L1M4 LINE L1 -5648 1211 931 23 68 0 0 chr4 123132197 123132241 -79196106 + AT_rich Low_complexity Low_complexity 1 44 0 255 355 33 33 chr4 123132326 123132509 -79195838 + L2 LINE L2 2652 2834 -480 409 271 82 0 chr4 123132635 123132757 -79195590 + MIR SINE MIR 131 262 0 373 334 70 40 chr4 123132766 123133065 -79195282 + L2 LINE L2 2919 3226 -87 1570 309 104 27 chr4 123133243 123134058 -79194289 + L2 LINE L2 1854 2731 -583 719 345 26 4 chr4 123135092 123135437 -79192910 + L2 LINE L2 2771 3119 -194 8919 160 111 17 chr4 123136324 123139104 -79189243 - L1PBa LINE L1 -2976 3886 625 362 200 12 12 chr4 123139092 123139177 -79189170 - L1PBa LINE L1 -6659 204 120 * 2803 10 0 0 chr4 123140088 123140397 -79187950 + AluYa5 SINE Alu 1 309 -2 562 83 24 0 chr4 123140647 123140731 -79187616 - L1PBa LINE L1 -5178 1685 1600 262 336 31 49 chr4 123141244 123141470 -79186877 - L1MC4 LINE L1 -1050 6992 6771 252 114 0 0 chr4 123141983 123142018 -79186329 - U2 snRNA snRNA -153 35 1 313 245 13 119 chr4 123143823 123143893 -79184454 - MLT1J LTR MaLR -40 471 426 2400 67 0 16 chr4 123143893 123144207 -79184140 + AluY SINE Alu 3 311 0 313 245 13 119 chr4 123144207 123144295 -79184052 - MLT1J LTR MaLR -85 426 330 1882 189 39 35 chr4 123144318 123144867 -79183480 + MLT2A2 LTR ERVL 1 554 0 30 77 0 0 chr4 123145474 123145539 -79182808 + AT_rich Low_complexity Low_complexity 1 65 0 400 282 110 31 chr4 123147115 123147434 -79180913 - L1MC4 LINE L1 -1897 5911 5568 497 283 119 63 chr4 123147458 123147903 -79180444 - L1MC4 LINE L1 -791 5355 4886 222 37 0 0 chr4 123148384 123148411 -79179936 + (TG)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr4 123149258 123149279 -79179068 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr4 123149685 123149728 -79178619 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr4 123150429 123150454 -79177893 + AT_rich Low_complexity Low_complexity 1 25 0 462 108 0 0 chr4 123151723 123151797 -79176550 + (TC)n Simple_repeat Simple_repeat 2 75 0 26 93 0 0 chr4 123151853 123151928 -79176419 + AT_rich Low_complexity Low_complexity 1 75 0 1803 122 8 0 chr4 123151965 123152254 -79176093 - AluSp SINE Alu 0 319 29 24 53 0 0 chr4 123152471 123152509 -79175838 + AT_rich Low_complexity Low_complexity 1 38 0 222 191 0 0 chr4 123152859 123152906 -79175441 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 297 0 0 0 chr4 123152992 123153025 -79175322 + (TG)n Simple_repeat Simple_repeat 2 34 0 297 336 182 7 chr4 123153166 123153309 -79175038 - MER5A DNA MER1_type -6 183 16 2053 126 3 19 chr4 123153438 123153755 -79174592 - AluSx SINE Alu 0 312 1 21 0 0 0 chr4 123153835 123153856 -79174491 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 123155329 123155352 -79172995 + AT_rich Low_complexity Low_complexity 1 23 0 271 261 126 9 chr4 123155834 123155945 -79172402 - L1ME2 LINE L1 -34 6130 6007 * 3848 210 42 17 chr4 123155944 123156822 -79171525 - L1MC3 LINE L1 -304 7481 6582 1051 236 19 62 chr4 123156822 123157144 -79171203 - MLT1C LTR MaLR 0 467 160 22929 90 10 3 chr4 123157145 123160386 -79167961 - L1P LINE L1 -1609 4537 1275 3394 74 5 0 chr4 123160386 123160832 -79167515 + L1PA6 LINE L1 5704 6151 -3 739 198 12 24 chr4 123160834 123161001 -79167346 - MLT1C LTR MaLR -302 165 1 849 216 22 0 chr4 123161001 123161182 -79167165 - L1MC3 LINE L1 -1199 6586 6402 545 201 42 70 chr4 123161179 123161393 -79166954 - L1M4 LINE L1 -850 5296 5089 * 275 292 56 59 chr4 123161448 123161839 -79166508 - L1MEc LINE L1 -4130 2433 2044 22 35 0 0 chr4 123162120 123162149 -79166198 + AT_rich Low_complexity Low_complexity 1 29 0 237 108 0 0 chr4 123162279 123162316 -79166031 + (T)n Simple_repeat Simple_repeat 1 37 0 1187 301 68 28 chr4 123162336 123163008 -79165339 - L1MEc LINE L1 -4640 1744 1046 3444 263 39 29 chr4 123163015 123164442 -79163905 - L1M1 LINE L1 -5417 2148 27 265 385 47 20 chr4 123165179 123165327 -79163020 - MER5A DNA MER1_type 0 189 38 398 146 39 1 chr4 123166839 123166924 -79161423 - AluSg/x SINE Alu -33 269 211 5463 40 0 6 chr4 123166926 123167596 -79160751 - L1PA4 LINE L1 -166 5989 5324 581 323 60 22 chr4 123167621 123167890 -79160457 + L2 LINE L2 524 802 -2512 2221 164 0 19 chr4 123168061 123168488 -79159859 - L1PA16 LINE L1 0 6166 5748 250 273 49 49 chr4 123168592 123168735 -79159612 - L1P LINE L1 -1978 4168 4026 329 278 102 46 chr4 123168923 123169139 -79159208 - L1M4 LINE L1 -2470 3676 3449 23 0 0 0 chr4 123170021 123170044 -79158303 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 123170770 123170791 -79157556 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4 123170879 123170910 -79157437 + AT_rich Low_complexity Low_complexity 1 31 0 1676 265 56 37 chr4 123171798 123172333 -79156014 + MLT1E LTR MaLR 49 593 0 605 299 33 43 chr4 123172700 123173004 -79155343 + L2 LINE L2 3011 3311 -2 30 45 0 0 chr4 123173322 123173366 -79154981 + AT_rich Low_complexity Low_complexity 1 44 0 779 171 26 0 chr4 123174070 123174222 -79154125 + L1MA4 LINE L1 6138 6293 -7 41 89 0 19 chr4 123175000 123175158 -79153189 + AT_rich Low_complexity Low_complexity 1 155 0 26 30 0 0 chr4 123175321 123175354 -79152993 + AT_rich Low_complexity Low_complexity 1 33 0 255 315 65 20 chr4 123175533 123175733 -79152614 - L1M4 LINE L1 -1276 4870 4662 24 67 0 0 chr4 123176074 123176119 -79152228 + AT_rich Low_complexity Low_complexity 1 45 0 562 287 137 16 chr4 123176330 123176637 -79151710 + ERVL LTR ERVL 2334 2677 -3087 289 403 44 16 chr4 123176900 123177148 -79151199 + ERVL LTR ERVL 3366 3620 -2034 264 289 40 0 chr4 123177242 123177318 -79151029 + L1ME2 LINE L1 6073 6151 -13 258 313 97 50 chr4 123177592 123177892 -79150455 + ERVL LTR ERVL 3773 4086 -1678 452 308 7 14 chr4 123178383 123178529 -79149818 + LTR33 LTR ERVL 1 145 -376 477 301 85 46 chr4 123178859 123179320 -79149027 + L1M4 LINE L1 2349 2827 -3319 184 356 10 0 chr4 123179350 123179454 -79148893 - MIR SINE MIR -21 241 137 208 220 20 0 chr4 123179728 123179778 -79148569 - L2 LINE L2 -2 3311 3261 2081 128 10 0 chr4 123179946 123180244 -79148103 + AluSx SINE Alu 1 301 -11 291 296 46 5 chr4 123181347 123181543 -79146804 + L1MEc LINE L1 2011 2214 -4182 195 42 0 0 chr4 123181928 123181952 -79146395 + (CA)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr4 123182108 123182136 -79146211 + AT_rich Low_complexity Low_complexity 1 28 0 1481 106 15 0 chr4 123182158 123182357 -79145990 - AluSx SINE Alu -110 202 1 330 197 0 0 chr4 123182301 123182367 -79145980 - AluSp SINE Alu -112 191 126 208 220 20 0 chr4 123182514 123182564 -79145783 + L2 LINE L2 3261 3311 -2 2101 106 33 0 chr4 123182691 123182992 -79145355 - AluSp SINE Alu 0 313 3 310 376 68 61 chr4 123182998 123183423 -79144924 + L2 LINE L2 2830 3257 -15 22 35 0 0 chr4 123183894 123183923 -79144424 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 123184514 123184545 -79143802 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 123186782 123186810 -79141537 + AT_rich Low_complexity Low_complexity 1 28 0 208 284 30 15 chr4 123186885 123186952 -79141395 + MER5A DNA MER1_type 4 71 -118 399 127 0 0 chr4 123187318 123187381 -79140966 + (TA)n Simple_repeat Simple_repeat 1 63 0 4215 206 53 43 chr4 123188051 123188319 -79140028 - L1MC2 LINE L1 -2 6622 6358 1962 119 6 35 chr4 123188319 123188637 -79139710 - AluSx SINE Alu -3 309 1 4215 206 53 43 chr4 123188637 123189243 -79139104 - L1MC2 LINE L1 -266 6358 5760 1970 113 20 17 chr4 123189243 123189536 -79138811 + AluSc SINE Alu 1 294 -15 4215 206 53 43 chr4 123189536 123190391 -79137956 - L1MC2 LINE L1 -864 5760 4873 276 245 48 101 chr4 123190391 123190486 -79137861 - L1MC2 LINE L1 -3818 2608 2526 2060 142 3 0 chr4 123190486 123190797 -79137550 - AluSx SINE Alu 0 312 1 276 245 48 101 chr4 123190797 123190889 -79137458 - L1MC2 LINE L1 -3900 2526 2431 1804 168 43 0 chr4 123190919 123191246 -79137101 + MER7A DNA MER2_type 7 345 -1 2434 218 53 28 chr4 123191271 123192431 -79135916 - L1MC2 LINE L1 -4858 1049 336 325 181 149 11 chr4 123192446 123192540 -79135807 - L1MC2 LINE L1 -6271 155 49 231 285 92 52 chr4 123192613 123192981 -79135366 - HAL1 LINE L1 -19 2488 2106 8605 184 84 57 chr4 123193611 123195207 -79133140 + L1MCa LINE L1 19 1696 -4730 245 29 29 0 chr4 123195207 123195241 -79133106 + (CA)n Simple_repeat Simple_repeat 2 36 0 8605 184 84 57 chr4 123195241 123195927 -79132420 + L1MCa LINE L1 1696 2362 -4064 21 0 0 0 chr4 123195941 123195962 -79132385 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr4 123196051 123196096 -79132251 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr4 123196528 123196554 -79131793 + AT_rich Low_complexity Low_complexity 1 26 0 3293 179 114 25 chr4 123196628 123197426 -79130921 + L1MC1 LINE L1 5452 6320 -13 476 272 1 9 chr4 123197474 123197614 -79130733 + L1ME3 LINE L1 6016 6154 -8 2084 123 3 0 chr4 123197751 123198052 -79130295 - AluSg SINE Alu -6 304 3 21 36 0 0 chr4 123198255 123198283 -79130064 + AT_rich Low_complexity Low_complexity 1 28 0 4463 166 38 9 chr4 123198294 123199148 -79129199 + L1PB4 LINE L1 5276 6153 -3 26 0 0 0 chr4 123199305 123199331 -79129016 + AT_rich Low_complexity Low_complexity 1 26 0 1227 226 134 3 chr4 123200186 123200536 -79127811 - MSTD LTR MaLR 0 396 1 292 237 26 9 chr4 123200934 123201048 -79127299 + CT-rich Low_complexity Low_complexity 5 120 0 1509 230 9 33 chr4 123201695 123202075 -79126272 - MLT1A2 LTR MaLR 0 396 1 291 302 88 47 chr4 123202378 123202570 -79125777 + LTR41 LTR ERVL 1 200 -573 284 354 26 9 chr4 123203593 123203706 -79124641 - MIR SINE MIR -125 137 23 207 186 0 0 chr4 123203751 123203794 -79124553 + A-rich Low_complexity Low_complexity 3 45 0 22 0 0 0 chr4 123204271 123204293 -79124054 + AT_rich Low_complexity Low_complexity 1 22 0 230 321 29 0 chr4 123204952 123205089 -79123258 + L1M LINE L1 5257 5397 -936 288 0 0 0 chr4 123205244 123205276 -79123071 + (A)n Simple_repeat Simple_repeat 1 32 0 450 160 43 32 chr4 123205353 123205447 -79122900 + AluJ/FLAM SINE Alu 1 95 -217 415 224 98 19 chr4 123205878 123205992 -79122355 + MLT2D LTR ERVL 267 378 -36 180 77 0 0 chr4 123205992 123206018 -79122329 + (CA)n Simple_repeat Simple_repeat 1 26 0 415 224 98 19 chr4 123206018 123206059 -79122288 + MLT2D LTR ERVL 378 414 0 1916 171 41 58 chr4 123206597 123206750 -79121597 + MLT2A2 LTR ERVL 1 155 -399 2178 100 7 3 chr4 123206750 123207051 -79121296 - AluSg SINE Alu -8 302 1 1916 171 41 58 chr4 123207051 123207452 -79120895 + MLT2A2 LTR ERVL 155 554 0 223 49 49 0 chr4 123207471 123207512 -79120835 + (TA)n Simple_repeat Simple_repeat 2 44 0 26 93 0 0 chr4 123207633 123207708 -79120639 + AT_rich Low_complexity Low_complexity 1 75 0 909 137 40 11 chr4 123209182 123209357 -79118990 - L1MA2 LINE L1 0 6304 6125 21 57 0 0 chr4 123210451 123210486 -79117861 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr4 123210944 123210983 -79117364 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr4 123212661 123212687 -79115660 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr4 123212885 123212921 -79115426 + AT_rich Low_complexity Low_complexity 1 36 0 23 78 0 0 chr4 123213406 123213457 -79114890 + AT_rich Low_complexity Low_complexity 1 51 0 486 311 61 0 chr4 123213710 123213858 -79114489 + LTR16A LTR ERVL 221 377 -73 392 302 103 0 chr4 123213902 123214028 -79114319 + HERV16 LTR ERVL 479 617 -4379 9059 27 0 1 chr4 123214052 123215903 -79112444 - L1PA4 LINE L1 0 6155 4305 1237 39 0 0 chr4 123215903 123216056 -79112291 + L1P LINE L1 4196 4348 -1798 392 339 81 42 chr4 123216292 123216673 -79111674 - L1M4 LINE L1 -3558 2588 2193 2199 211 20 2 chr4 123216807 123217263 -79111084 + MLT1C LTR MaLR 4 467 0 1598 167 67 11 chr4 123217289 123217795 -79110552 - L1M2 LINE L1 -743 5403 5002 3371 179 30 4 chr4 123217795 123218498 -79109849 + L1MA4 LINE L1 5561 6288 -12 32 26 0 0 chr4 123219694 123219733 -79108614 + AT_rich Low_complexity Low_complexity 1 39 0 317 266 28 11 chr4 123219744 123219921 -79108426 + (TA)n Simple_repeat Simple_repeat 1 180 0 539 231 17 0 chr4 123219924 123220041 -79108306 - FLAM_A SINE Alu -13 120 2 180 0 0 0 chr4 123221150 123221170 -79107177 + (A)n Simple_repeat Simple_repeat 1 20 0 344 289 10 0 chr4 123221691 123221795 -79106552 - LTR43 LTR ERV1 -306 296 192 336 339 108 14 chr4 123222588 123222874 -79105473 - L2 LINE L2 -2792 522 210 28 0 0 0 chr4 123222891 123222919 -79105428 + AT_rich Low_complexity Low_complexity 1 28 0 368 324 0 0 chr4 123223372 123223474 -79104873 - MER5A DNA MER1_type -78 111 10 265 237 0 17 chr4 123224209 123224268 -79104079 - MER5B DNA MER1_type 0 178 121 473 113 12 12 chr4 123225545 123225625 -79102722 + MADE1 DNA Mariner 1 80 0 4586 231 56 23 chr4 123226346 123228645 -79099702 - L1MB3 LINE L1 -13 6406 4027 343 143 3 0 chr4 123228645 123228705 -79099642 - MLT2B3 LTR ERVL 0 520 472 419 69 110 0 chr4 123228779 123228924 -79099423 + (TA)n Simple_repeat Simple_repeat 2 162 0 1678 246 33 56 chr4 123228928 123229462 -79098885 - MLT2B3 LTR ERVL -40 500 1 3646 246 40 56 chr4 123229490 123231465 -79096882 - L1MB3 LINE L1 -2379 4003 2057 * 4717 231 30 12 chr4 123231460 123232578 -79095769 - L1MB3 LINE L1 -5227 1157 20 22 70 0 0 chr4 123232595 123232638 -79095709 + AT_rich Low_complexity Low_complexity 1 43 0 207 100 0 0 chr4 123234451 123234481 -79093866 + (TG)n Simple_repeat Simple_repeat 1 30 0 28 48 0 0 chr4 123234529 123234571 -79093776 + AT_rich Low_complexity Low_complexity 1 42 0 2807 125 2 2 chr4 123235276 123235707 -79092640 - L1PB1 LINE L1 -2 6149 5719 30 59 0 0 chr4 123235871 123235922 -79092425 + AT_rich Low_complexity Low_complexity 1 51 0 21 82 0 0 chr4 123236050 123236099 -79092248 + AT_rich Low_complexity Low_complexity 1 49 0 1003 240 90 23 chr4 123236486 123236848 -79091499 - MER57A LTR ERV1 -2 401 41 1858 161 11 33 chr4 123237525 123237886 -79090461 - MER47A DNA MER2_type 0 366 14 414 350 113 44 chr4 123239209 123240006 -79088341 + L2 LINE L2 1500 2351 -963 1015 303 141 27 chr4 123240514 123241247 -79087100 - L1ME3A LINE L1 -11 6553 5738 351 239 219 13 chr4 123241239 123241545 -79086802 - L1ME3A LINE L1 -2134 4406 4038 * 326 237 53 116 chr4 123241565 123241674 -79086673 - L1ME3A LINE L1 -5069 1471 1380 2272 93 7 0 chr4 123241674 123241965 -79086382 - AluY SINE Alu -16 295 3 326 237 53 116 chr4 123241965 123242062 -79086285 - L1ME3A LINE L1 -5160 1380 1278 396 0 0 0 chr4 123243013 123243057 -79085290 + (GA)n Simple_repeat Simple_repeat 2 45 0 369 0 0 0 chr4 123243056 123243097 -79085250 + (TG)n Simple_repeat Simple_repeat 1 41 0 * 23 33 0 0 chr4 123243405 123243435 -79084912 + AT_rich Low_complexity Low_complexity 1 30 0 31 26 0 0 chr4 123243561 123243599 -79084748 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr4 123243735 123243759 -79084588 + AT_rich Low_complexity Low_complexity 1 24 0 315 0 0 0 chr4 123243839 123243874 -79084473 + (TG)n Simple_repeat Simple_repeat 2 36 0 374 320 77 63 chr4 123244173 123244617 -79083730 - L1MEd LINE L1 -5058 1061 612 409 277 17 8 chr4 123245100 123245219 -79083128 + MLT1J2 LTR MaLR 92 211 -239 334 399 18 33 chr4 123245545 123245941 -79082406 + MLT1I LTR MaLR 1 390 -19 33 56 0 0 chr4 123247220 123247274 -79081073 + AT_rich Low_complexity Low_complexity 1 54 0 1829 243 74 14 chr4 123248103 123248605 -79079742 + L1M1 LINE L1 15 546 -7019 * 6485 146 15 4 chr4 123248587 123250299 -79078048 + L1MA1 LINE L1 4540 6270 -32 258 32 0 0 chr4 123250299 123250330 -79078017 + (CA)n Simple_repeat Simple_repeat 1 31 0 6485 146 15 4 chr4 123250330 123250364 -79077983 + L1MA1 LINE L1 6270 6302 0 21 82 0 0 chr4 123250464 123250513 -79077834 + AT_rich Low_complexity Low_complexity 1 49 0 42326 57 2 1 chr4 123251593 123257744 -79070603 + L1PA5 LINE L1 3 6154 0 387 63 16 0 chr4 123257934 123257997 -79070350 - L1MA3 LINE L1 0 7724 7661 757 100 0 0 chr4 123258050 123258182 -79070165 + AluSp/q SINE Alu 186 317 0 5729 175 14 16 chr4 123258190 123258583 -79069764 - L1MA3 LINE L1 -54 7670 7278 1870 79 0 16 chr4 123258583 123258837 -79069510 + AluY SINE Alu 60 309 -2 5729 175 14 16 chr4 123258837 123260630 -79067717 - L1MA3 LINE L1 -446 7278 5486 5217 189 34 17 chr4 123260605 123262672 -79065675 - L1MA3 LINE L1 -2840 4725 2623 * 1896 189 3 3 chr4 123262741 123263084 -79065263 - MER47A DNA MER2_type -23 343 1 21 0 0 0 chr4 123263178 123263199 -79065148 + AT_rich Low_complexity Low_complexity 1 21 0 1333 214 71 6 chr4 123264151 123264473 -79063874 + MER2 DNA MER2_type 2 344 0 3848 138 3 6 chr4 123264669 123265034 -79063313 - L1PB4 LINE L1 -1 6155 5791 372 22 0 0 chr4 123265034 123265079 -79063268 + (TG)n Simple_repeat Simple_repeat 1 45 0 3848 138 3 6 chr4 123265079 123265338 -79063009 - L1PB4 LINE L1 -365 5791 5533 223 279 0 25 chr4 123266503 123266582 -79061765 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 219 272 0 0 chr4 123266583 123266664 -79061683 + (TATATG)n Simple_repeat Simple_repeat 3 83 0 1463 227 49 56 chr4 123266665 123267143 -79061204 - MLT1D LTR MaLR -9 645 22 599 274 65 0 chr4 123267157 123267343 -79061004 + Charlie5 DNA MER1_type 1053 1250 -1362 204 125 0 0 chr4 123267539 123267571 -79060776 + (TA)n Simple_repeat Simple_repeat 1 32 0 956 292 64 22 chr4 123267731 123268904 -79059443 + L1ME LINE L1 4381 5757 -405 1499 211 29 0 chr4 123268967 123269246 -79059101 + L1M1 LINE L1 1550 1836 -5729 1469 112 9 0 chr4 123270307 123270521 -79057826 - L1PA8A LINE L1 -2 6129 5914 4878 70 3 0 chr4 123270533 123271180 -79057167 + L1PA8A LINE L1 5254 5902 -229 2386 182 56 15 chr4 123271177 123272117 -79056230 + L1M1 LINE L1 1835 4133 -3432 * 51 79 0 0 chr4 123272117 123272231 -79056116 + AT_rich Low_complexity Low_complexity 1 114 0 29835 128 9 52 chr4 123273881 123280317 -79048030 + L1PA7 LINE L1 9 6159 0 246 95 0 48 chr4 123280980 123281022 -79047325 - L1PA8A LINE L1 -196 5935 5896 2329 170 9 16 chr4 123282416 123282864 -79045483 - MER65A LTR ERV1 0 445 1 890 345 144 21 chr4 123283538 123284329 -79044018 + L2 LINE L2 1181 2068 -1246 1843 270 63 31 chr4 123284350 123284964 -79043383 - MER76 LTR ERV -54 634 1 1166 124 0 27 chr4 123285038 123285224 -79043123 - AluSg/x SINE Alu -3 309 129 586 342 216 5 chr4 123285245 123285692 -79042655 + L2 LINE L2 2777 3313 0 322 300 60 7 chr4 123287333 123287483 -79040864 - MER114 LTR ERV -482 166 9 22 88 0 0 chr4 123288005 123288062 -79040285 + AT_rich Low_complexity Low_complexity 1 57 0 1071 306 59 19 chr4 123288276 123288816 -79039531 + L1ME1 LINE L1 5576 6137 -29 319 250 151 53 chr4 123289119 123289271 -79039076 - L1ME LINE L1 -4566 1649 1483 316 293 65 42 chr4 123289372 123289754 -79038593 - L1ME LINE L1 -4998 1398 1008 303 270 11 62 chr4 123289818 123289945 -79038402 - L1ME LINE L1 -5939 266 148 688 244 146 32 chr4 123290051 123290297 -79038050 + MER93b LTR ERV1 90 363 -10 261 119 0 0 chr4 123290336 123290378 -79037969 + (TG)n Simple_repeat Simple_repeat 1 42 0 16566 199 10 26 chr4 123290556 123295778 -79032569 + L1PA14 LINE L1 1 5304 -2280 1722 190 0 0 chr4 123295778 123296068 -79032279 + AluSx SINE Alu 1 290 -22 16566 199 10 26 chr4 123296068 123296763 -79031584 + L1PA14 LINE L1 5304 6008 -1576 2354 85 0 0 chr4 123296763 123297058 -79031289 + AluY SINE Alu 1 295 -16 16566 199 10 26 chr4 123297058 123297789 -79030558 + L1PA14 LINE L1 6008 6810 -774 377 156 0 0 chr4 123297786 123297850 -79030497 - THE1-int LTR MaLR -771 809 746 * 1746 144 51 51 chr4 123298367 123298742 -79029605 - THE1C LTR MaLR 0 375 1 2660 129 9 0 chr4 123298742 123299162 -79029185 + L1PA14 LINE L1 6806 7229 -370 303 247 45 34 chr4 123299162 123299251 -79029096 + L1MC4 LINE L1 6615 6704 -1338 2267 133 8 6 chr4 123299301 123299663 -79028684 + L1PA14 LINE L1 7232 7594 -5 1367 276 50 59 chr4 123300711 123301251 -79027096 + MER77 LTR ERV1 54 588 -17 26 0 0 0 chr4 123301668 123301694 -79026653 + AT_rich Low_complexity Low_complexity 1 26 0 638 282 98 6 chr4 123301777 123302093 -79026254 + L1MD3 LINE L1 6933 7277 -718 293 319 30 30 chr4 123302094 123302229 -79026118 + MLT1F1 LTR MaLR 1 135 -432 2163 248 25 6 chr4 123302239 123302787 -79025560 + L1MD3 LINE L1 7429 7987 -8 358 288 34 63 chr4 123302830 123303035 -79025312 + L2 LINE L2 3067 3265 -48 1325 197 48 67 chr4 123303223 123303579 -79024768 - MLT1A1 LTR MaLR 0 365 17 248 210 0 16 chr4 123304475 123304537 -79023810 + L1MC4 LINE L1 6640 6700 -1342 369 121 43 43 chr4 123304539 123304679 -79023668 + (TA)n Simple_repeat Simple_repeat 2 141 0 225 0 0 0 chr4 123304679 123304704 -79023643 + (CA)n Simple_repeat Simple_repeat 2 26 0 24 53 0 0 chr4 123305332 123305370 -79022977 + AT_rich Low_complexity Low_complexity 1 38 0 351 0 0 0 chr4 123305586 123305625 -79022722 + (A)n Simple_repeat Simple_repeat 1 39 0 189 0 0 0 chr4 123305625 123305646 -79022701 + (GA)n Simple_repeat Simple_repeat 2 22 0 297 75 0 0 chr4 123305949 123305989 -79022358 + (TG)n Simple_repeat Simple_repeat 2 41 0 608 0 14 0 chr4 123306405 123306477 -79021870 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 741 272 19 29 chr4 123306510 123306716 -79021631 - MER58A DNA MER1_type -16 208 5 7358 227 45 71 chr4 123306858 123310004 -79018343 - L1PB4 LINE L1 -2 6857 3872 2363 159 36 2 chr4 123310004 123310418 -79017929 + MSTA LTR MaLR 1 428 0 7358 227 45 71 chr4 123310418 123311634 -79016713 - L1PB4 LINE L1 -2987 3872 2625 4063 241 32 25 chr4 123311644 123313043 -79015304 - L1PBb LINE L1 -4014 2834 1335 249 333 0 0 chr4 123313029 123313116 -79015231 - L1PB4 LINE L1 -5286 1563 1477 * 335 333 28 0 chr4 123313117 123313225 -79015122 - L1PBb LINE L1 -5711 1138 1028 589 137 51 1 chr4 123313882 123314028 -79014319 - THE1B LTR MaLR 0 364 189 609 307 42 56 chr4 123314029 123314316 -79014031 - L1PBb LINE L1 -6557 292 10 195 162 0 0 chr4 123315234 123315271 -79013076 + (CA)n Simple_repeat Simple_repeat 2 38 0 264 283 82 13 chr4 123315381 123315540 -79012807 - L1M4 LINE L1 -1117 5029 4860 21 57 0 0 chr4 123315783 123315818 -79012529 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 123316211 123316239 -79012108 + AT_rich Low_complexity Low_complexity 1 28 0 483 18 0 0 chr4 123316451 123316507 -79011840 + (TATAA)n Simple_repeat Simple_repeat 2 57 0 2052 134 0 0 chr4 123316515 123316805 -79011542 + AluSq SINE Alu 1 290 -23 834 238 0 0 chr4 123316930 123317094 -79011253 - MER77 LTR ERV1 -4 601 438 22 56 0 0 chr4 123317321 123317357 -79010990 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 123317462 123317484 -79010863 + AT_rich Low_complexity Low_complexity 1 22 0 211 356 120 32 chr4 123318084 123318368 -79009979 + L2 LINE L2 2049 2357 -957 306 289 44 18 chr4 123318407 123318521 -79009826 - L2 LINE L2 -795 2519 2403 1033 53 0 0 chr4 123318571 123318704 -79009643 + L1PA4 LINE L1 6020 6152 -3 26 0 0 0 chr4 123318704 123318730 -79009617 + AT_rich Low_complexity Low_complexity 1 26 0 291 54 0 0 chr4 123318977 123319014 -79009333 + (CA)n Simple_repeat Simple_repeat 1 37 0 240 59 0 0 chr4 123319557 123319591 -79008756 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 259 318 40 47 chr4 123319597 123319745 -79008602 + L2 LINE L2 2557 2703 -611 370 211 0 0 chr4 123319920 123319991 -79008356 - MLT1B LTR MaLR -16 374 304 865 124 0 0 chr4 123321240 123321377 -79006970 + L1MA3 LINE L1 6169 6305 0 2216 112 0 10 chr4 123321390 123321702 -79006645 + AluSx SINE Alu 1 309 -3 231 114 0 0 chr4 123322161 123322196 -79006151 + (T)n Simple_repeat Simple_repeat 1 35 0 412 304 105 5 chr4 123322493 123322684 -79005663 - Charlie8 DNA MER1_type -2151 266 57 26 30 0 0 chr4 123322843 123322876 -79005471 + AT_rich Low_complexity Low_complexity 1 33 0 1819 234 53 28 chr4 123323517 123324048 -79004299 + L1MDa LINE L1 17 560 -5980 638 314 39 20 chr4 123324052 123324540 -79003807 + L1M4 LINE L1 4890 5386 -760 876 158 0 0 chr4 123324821 123324954 -79003393 + AluSq/x SINE Alu 2 134 -178 661 237 72 9 chr4 123325613 123325805 -79002542 - MER61D LTR ERV1 -14 493 314 23 86 0 0 chr4 123326364 123326422 -79001925 + AT_rich Low_complexity Low_complexity 1 58 0 2169 128 3 0 chr4 123326989 123327301 -79001046 + AluSp SINE Alu 1 313 0 26 50 0 0 chr4 123327480 123327520 -79000827 + AT_rich Low_complexity Low_complexity 1 40 0 1716 174 41 26 chr4 123328074 123328413 -78999934 - MER7A DNA MER2_type 0 346 5 1310 323 117 23 chr4 123331236 123332149 -78996198 + L2 LINE L2 1548 2546 -768 446 286 44 12 chr4 123332155 123332407 -78995940 + L1MDa LINE L1 1348 1607 -5114 720 274 83 65 chr4 123332408 123332863 -78995484 + MLT2B1 LTR ERVL 1 520 0 16376 230 39 18 chr4 123332864 123333329 -78995018 + ERVL LTR ERVL 2 456 -5305 1875 144 0 3 chr4 123333329 123333628 -78994719 + AluSx SINE Alu 1 298 -14 16376 230 39 18 chr4 123333628 123338687 -78989660 + ERVL LTR ERVL 456 5615 -146 1246 192 24 38 chr4 123338694 123338986 -78989361 + L1MA9 LINE L1 5808 6095 -217 639 217 116 72 chr4 123339007 123339284 -78989063 + MLT2C2 LTR ERVL 124 412 -52 219 188 43 14 chr4 123339297 123339366 -78988981 + (TA)n Simple_repeat Simple_repeat 1 71 0 252 160 0 40 chr4 123339384 123339434 -78988913 + MLT2C2 LTR ERVL 367 414 0 671 320 58 16 chr4 123339471 123339918 -78988429 + L1MDa LINE L1 1640 2105 -4616 7013 59 14 35 chr4 123339991 123343727 -78984620 + L1PA5 LINE L1 2521 6179 0 2073 113 10 6 chr4 123344044 123344355 -78983992 + AluSq SINE Alu 1 312 -1 1253 243 87 38 chr4 123344670 123345176 -78983171 - L1M4 LINE L1 -1909 4237 3707 843 116 7 36 chr4 123345388 123345526 -78982821 - AluSq/x SINE Alu -178 134 1 253 338 172 6 chr4 123345653 123345810 -78982537 + MIR SINE MIR 32 214 -48 454 151 0 0 chr4 123345814 123345900 -78982447 + L1MA7 LINE L1 6206 6291 0 1328 208 14 34 chr4 123345903 123346196 -78982151 + AluJo SINE Alu 1 287 -25 258 136 0 0 chr4 123346196 123346240 -78982107 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 22 80 0 0 chr4 123346971 123347021 -78981326 + AT_rich Low_complexity Low_complexity 1 50 0 1944 105 0 0 chr4 123347024 123347290 -78981057 + AluSq SINE Alu 40 305 -8 2353 183 50 50 chr4 123348458 123348665 -78979682 + L1PB4 LINE L1 5577 5783 -373 657 118 0 0 chr4 123348665 123348784 -78979563 + (TA)n Simple_repeat Simple_repeat 1 119 0 2353 183 50 50 chr4 123348784 123348814 -78979533 + L1PB4 LINE L1 5783 5812 -344 1962 167 90 25 chr4 123348814 123349215 -78979132 - MSTA LTR MaLR 0 428 2 2353 183 50 50 chr4 123349215 123349246 -78979101 + L1PB4 LINE L1 5812 5842 -314 1602 181 55 27 chr4 123349246 123349611 -78978736 - THE1C LTR MaLR 0 375 1 8916 143 22 36 chr4 123349611 123351211 -78977136 - THE1C-int LTR MaLR 0 1580 3 1617 163 60 43 chr4 123351214 123351582 -78976765 - THE1C LTR MaLR -1 374 1 2353 183 50 50 chr4 123351582 123351885 -78976462 + L1PB4 LINE L1 5842 6155 -1 320 362 40 35 chr4 123352659 123352833 -78975514 - MIR3 SINE MIR -2 206 32 254 331 23 86 chr4 123353771 123354028 -78974319 + MIR SINE MIR 3 243 -19 785 292 20 30 chr4 123354047 123354348 -78973999 - L1ME3A LINE L1 -5 6165 5868 23 97 0 0 chr4 123354828 123354900 -78973447 + AT_rich Low_complexity Low_complexity 1 72 0 22 0 0 0 chr4 123355076 123355098 -78973249 + AT_rich Low_complexity Low_complexity 1 22 0 352 296 28 63 chr4 123355246 123355388 -78972959 + MIR SINE MIR 18 154 -108 2101 95 3 43 chr4 123356209 123356514 -78971833 - AluSp SINE Alu -20 293 1 310 358 60 25 chr4 123356579 123356861 -78971486 + ERVL LTR ERVL 2934 3225 -2539 871 193 0 34 chr4 123356877 123357053 -78971294 - FAM SINE Alu -1 174 5 452 420 38 17 chr4 123357482 123358067 -78970280 + ERVL LTR ERVL 4201 4797 -857 456 250 104 82 chr4 123358828 123359096 -78969251 + LTR16A1 LTR ERVL 182 455 -2 223 321 0 0 chr4 123359121 123359174 -78969173 - L2 LINE L2 -62 3210 3158 258 116 0 0 chr4 123360011 123360054 -78968293 + (CA)n Simple_repeat Simple_repeat 2 44 0 27 87 0 0 chr4 123360091 123360160 -78968187 + AT_rich Low_complexity Low_complexity 1 69 0 1569 145 35 8 chr4 123360303 123360558 -78967789 + MER2 DNA MER2_type 8 269 -76 1147 107 0 0 chr4 123362101 123362270 -78966077 + AluY SINE Alu 143 311 0 336 102 0 0 chr4 123362327 123362376 -78965971 + (TA)n Simple_repeat Simple_repeat 2 50 0 2646 157 19 23 chr4 123362828 123363344 -78965003 - L1MA6 LINE L1 0 6300 5787 310 171 0 37 chr4 123363364 123363446 -78964901 + (CATA)n Simple_repeat Simple_repeat 2 80 0 2520 180 7 53 chr4 123363447 123364098 -78964249 - L1MA6 LINE L1 -512 5788 5164 * 5909 196 35 40 chr4 123364092 123365560 -78962787 + L1MA6 LINE L1 3679 5140 -1006 416 349 43 10 chr4 123365574 123365783 -78962564 - MIR SINE MIR -40 222 7 21 57 0 0 chr4 123365840 123365875 -78962472 + AT_rich Low_complexity Low_complexity 1 35 0 252 0 0 0 chr4 123367135 123367163 -78961184 + (CA)n Simple_repeat Simple_repeat 2 29 0 257 286 23 10 chr4 123367328 123367462 -78960885 - MLT1J LTR MaLR -203 308 137 1208 128 0 0 chr4 123367515 123367687 -78960660 - AluY SINE Alu -10 301 130 22 35 0 0 chr4 123367849 123367878 -78960469 + AT_rich Low_complexity Low_complexity 1 29 0 393 200 44 76 chr4 123367885 123368020 -78960327 + FLAM_A SINE Alu 6 115 -18 1412 136 159 4 chr4 123368049 123368306 -78960041 - MER47A DNA MER2_type -65 301 5 365 301 77 13 chr4 123368559 123368715 -78959632 + LTR16A LTR ERVL 279 444 -6 2169 107 3 3 chr4 123368731 123369030 -78959317 + AluSc SINE Alu 1 299 -10 343 191 213 33 chr4 123370401 123370584 -78957763 + L1MD1 LINE L1 5184 5399 -747 797 244 41 0 chr4 123370631 123370852 -78957495 + L1MD1 LINE L1 6012 6241 -1 297 299 21 16 chr4 123370858 123371052 -78957295 + L1MC2 LINE L1 3072 3266 -2880 2855 190 28 8 chr4 123371143 123371850 -78956497 - L1PB4 LINE L1 -1 6153 5414 21 57 0 0 chr4 123371881 123371916 -78956431 + AT_rich Low_complexity Low_complexity 1 35 0 2250 292 90 23 chr4 123372013 123373474 -78954873 + L1MC2 LINE L1 3606 5165 -981 3242 175 75 63 chr4 123373481 123373546 -78954801 + L1MC2 LINE L1 5522 5585 -759 2012 118 59 0 chr4 123373546 123373835 -78954512 - AluSg SINE Alu -4 306 1 3242 175 75 63 chr4 123373835 123374290 -78954057 + L1MC2 LINE L1 5585 6058 -286 1726 197 0 0 chr4 123374290 123374590 -78953757 - AluJb SINE Alu -12 300 1 3242 175 75 63 chr4 123374590 123374881 -78953466 + L1MC2 LINE L1 6058 6344 0 1944 143 3 0 chr4 123374882 123375169 -78953178 - AluSx SINE Alu -22 290 3 230 265 0 0 chr4 123375319 123375368 -78952979 + L1MC4 LINE L1 6841 6889 -1153 1498 165 6 113 chr4 123375373 123375776 -78952571 + MER46B DNA MER2_type 1 236 0 1199 250 117 51 chr4 123375827 123376459 -78951888 + L1MC4 LINE L1 7213 7886 -156 846 244 44 0 chr4 123376459 123376729 -78951618 - Tigger6 DNA MER2_type -2 1595 1314 * 3680 239 26 20 chr4 123376714 123377022 -78951325 - Tigger6a DNA MER2_type -644 953 648 2119 106 0 0 chr4 123377022 123377315 -78951032 - AluSg SINE Alu -17 293 1 3680 239 26 20 chr4 123377315 123377953 -78950394 - Tigger6a DNA MER2_type -949 648 1 292 225 25 58 chr4 123378043 123378163 -78950184 + L1MC4 LINE L1 7914 8029 -13 411 237 29 10 chr4 123378989 123379110 -78949237 - FLAM_A SINE Alu -13 120 28 24 32 0 0 chr4 123379210 123379241 -78949106 + AT_rich Low_complexity Low_complexity 1 31 0 410 325 78 22 chr4 123379750 123380021 -78948326 + LTR16A LTR ERVL 159 444 -6 24 32 0 0 chr4 123380064 123380095 -78948252 + AT_rich Low_complexity Low_complexity 1 31 0 262 333 12 0 chr4 123380230 123380314 -78948033 - MER5A DNA MER1_type 0 189 105 2109 95 48 0 chr4 123380346 123380640 -78947707 - AluSx SINE Alu -2 310 3 182 208 19 0 chr4 123380809 123380862 -78947485 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 57 0 0 chr4 123381813 123381848 -78946499 + AT_rich Low_complexity Low_complexity 1 35 0 279 133 0 0 chr4 123382037 123382082 -78946265 + (CA)n Simple_repeat Simple_repeat 1 45 0 1796 162 24 18 chr4 123383074 123383210 -78945137 - MER47A DNA MER2_type -1957 366 232 3239 153 15 34 chr4 123383210 123383825 -78944522 + LTR26 LTR ERV1 1 603 0 1796 162 24 18 chr4 123383825 123384016 -78944331 - MER47A DNA MER2_type -2091 232 37 9901 194 12 2 chr4 123384056 123385820 -78942527 + ERVL-B3 LTR ERVL 3974 5755 -9 2205 247 20 39 chr4 123385822 123386381 -78941966 + MLT2B3 LTR ERVL 1 548 -6 281 349 28 9 chr4 123386556 123386665 -78941682 - L2 LINE L2 -21 3292 3182 38 0 0 0 chr4 123386907 123386945 -78941402 + AT_rich Low_complexity Low_complexity 1 38 0 47 44 0 0 chr4 123387012 123387080 -78941267 + AT_rich Low_complexity Low_complexity 1 68 0 878 166 19 0 chr4 123387643 123387800 -78940547 + L1MA8 LINE L1 5994 6153 -138 8136 213 20 7 chr4 123387828 123390220 -78938127 - L1P4 LINE L1 -436 5730 3305 3735 62 23 2 chr4 123390220 123390700 -78937647 + LTR2B LTR ERV1 1 490 0 2638 106 5 3 chr4 123390700 123391079 -78937268 + Harlequin LTR ERV1 1 380 -6516 * 4565 85 11 14 chr4 123391074 123391718 -78936629 + Harlequin LTR ERV1 262 903 -5993 * 6736 65 40 1 chr4 123391703 123392668 -78935679 + Harlequin LTR ERV1 1572 2574 -4322 4778 62 13 0 chr4 123392667 123393263 -78935084 + Harlequin LTR ERV1 3352 3955 -2941 * 10130 143 14 1 chr4 123393248 123394857 -78933490 + Harlequin LTR ERV1 4246 5876 -1020 212 353 70 13 chr4 123395173 123395329 -78933018 + L2 LINE L2 2059 2223 -1091 291 128 70 6 chr4 123395369 123395525 -78932822 + (TA)n Simple_repeat Simple_repeat 1 166 0 237 351 13 0 chr4 123395715 123395792 -78932555 - MIR SINE MIR -116 146 69 413 315 87 0 chr4 123395884 123396033 -78932314 + L2 LINE L2 2594 2755 -559 1781 180 43 122 chr4 123396306 123396621 -78931726 - L1M4 LINE L1 -1519 4627 4387 2521 125 5 30 chr4 123396621 123397060 -78931287 - L1MA6 LINE L1 0 6300 5873 1781 180 43 122 chr4 123397060 123397390 -78930957 - L1M4 LINE L1 -1759 4387 4033 207 0 0 0 chr4 123397521 123397544 -78930803 + (CAA)n Simple_repeat Simple_repeat 2 24 0 351 197 103 54 chr4 123397886 123398109 -78930238 + L1MDa LINE L1 2314 2547 -3993 1403 214 59 43 chr4 123398112 123398552 -78929795 + L1MB8 LINE L1 5679 6125 -53 1227 213 45 32 chr4 123398548 123398928 -78929419 - L1MA8 LINE L1 -1 6290 5906 * 206 352 51 88 chr4 123399816 123400089 -78928258 + L2 LINE L2 1154 1416 -1898 2471 28 0 0 chr4 123400297 123400584 -78927763 - L1P2 LINE L1 -408 5747 5461 7262 35 10 1 chr4 123400584 123401774 -78926573 + L1PA5 LINE L1 4952 6152 -2 1168 214 63 113 chr4 123402037 123402716 -78925631 + L1MEc LINE L1 1621 2265 -4131 496 159 47 0 chr4 123402719 123402826 -78925521 + L1MC3 LINE L1 6978 7089 -696 243 244 37 49 chr4 123402831 123402913 -78925434 + MLT1F1 LTR MaLR 39 119 -448 1491 244 78 6 chr4 123402964 123403464 -78924883 + L1M4 LINE L1 4646 5181 -965 1990 14 0 0 chr4 123404569 123404788 -78923559 + AluY SINE Alu 77 295 -16 2075 197 7 5 chr4 123509613 123510029 -78818318 - L1MB1 LINE L1 -284 5905 5489 1784 162 3 33 chr4 123510031 123510334 -78818013 + AluJb SINE Alu 1 294 -18 1563 243 11 6 chr4 123510343 123510865 -78817482 + L1M2 LINE L1 4949 5474 -743 275 274 25 54 chr4 123512216 123512435 -78815912 - L1MC/D LINE L1 -567 5766 5558 1404 273 36 53 chr4 123512512 123513409 -78814938 - L1MC/D LINE L1 -859 5287 4407 1053 262 41 41 chr4 123513413 123513925 -78814422 - L1MC/D LINE L1 -3278 2868 2357 12590 93 28 26 chr4 123515073 123517469 -78810878 - HERVH LTR ERV1 -5214 2499 1 2382 89 9 9 chr4 123517471 123517818 -78810529 - LTR7 LTR ERV1 -2 448 102 187 259 52 0 chr4 123517822 123517880 -78810467 + L2 LINE L2 2556 2616 -698 494 122 0 0 chr4 123517970 123518044 -78810303 + AluSp/q SINE Alu 230 303 -10 456 261 111 51 chr4 123518138 123518585 -78809762 + L1ME LINE L1 824 1188 -4925 525 281 133 44 chr4 123518604 123519063 -78809284 + L1ME LINE L1 1866 2365 -4031 652 249 94 55 chr4 123519237 123519619 -78808728 + L1ME LINE L1 2627 3032 -3183 2275 113 3 0 chr4 123519619 123519930 -78808417 + AluSp SINE Alu 2 313 0 652 249 94 55 chr4 123519930 123520017 -78808330 + L1ME LINE L1 3032 3114 -3101 821 257 41 0 chr4 123520132 123520350 -78807997 - L1MC3 LINE L1 -1290 6495 6269 1885 155 126 18 chr4 123520350 123520730 -78807617 + MSTA LTR MaLR 1 421 -7 1655 251 51 2 chr4 123520755 123521241 -78807106 - L1MC3 LINE L1 -1514 6271 5762 1524 239 85 14 chr4 123521351 123521787 -78806560 - MLT1C LTR MaLR 0 467 1 1995 127 62 8 chr4 123522141 123522481 -78805866 - MER61C LTR ERV1 0 434 84 1823 97 0 0 chr4 123522872 123523100 -78805247 - AluSx SINE Alu -84 228 1 783 268 63 36 chr4 123523148 123523358 -78804989 + MLT1D LTR MaLR 1 204 -301 1663 172 7 27 chr4 123523358 123523654 -78804693 + AluJo SINE Alu 11 300 -12 783 268 63 36 chr4 123523654 123523874 -78804473 + MLT1D LTR MaLR 204 503 -2 250 300 44 44 chr4 123524072 123524299 -78804048 - L1MEd LINE L1 -4900 1219 993 237 108 0 0 chr4 123525888 123525925 -78802422 + (TG)n Simple_repeat Simple_repeat 1 37 0 1844 164 92 84 chr4 123526106 123526606 -78801741 - MER67D LTR ERV1 -8 506 3 1391 119 0 0 chr4 123527614 123527808 -78800539 - LTR8 LTR ERV1 0 691 498 1379 143 8 54 chr4 123527818 123528076 -78800271 - LTR8 LTR ERV1 -445 246 1 2635 86 106 5 chr4 123528141 123528548 -78799799 - LTR7 LTR ERV1 -2 448 1 2251 102 62 11 chr4 123528548 123528921 -78799426 - HERVH LTR ERV1 0 7713 7322 1429 115 18 5 chr4 123528919 123529136 -78799211 - HERVH LTR ERV1 -1894 5819 5600 * 4395 142 0 1 chr4 123529137 123529800 -78798547 - HERVH LTR ERV1 -2564 5149 4488 3178 108 29 6 chr4 123529802 123530293 -78798054 - HERVH LTR ERV1 -3720 3993 3492 869 155 20 0 chr4 123530283 123530431 -78797916 - HERVH LTR ERV1 -4423 3290 3140 * 2258 123 6 11 chr4 123530425 123530783 -78797564 - HERVH LTR ERV1 -4726 2987 2632 1592 152 59 0 chr4 123531044 123531333 -78797014 - MER7A DNA MER2_type 0 346 43 24 53 0 0 chr4 123531366 123531404 -78796943 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr4 123531908 123531929 -78796418 + AT_rich Low_complexity Low_complexity 1 21 0 234 259 17 0 chr4 123532762 123532820 -78795527 + (TG)n Simple_repeat Simple_repeat 1 59 0 1603 168 28 11 chr4 123532915 123533200 -78795147 + THE1C LTR MaLR 18 307 -68 7957 172 16 40 chr4 123533200 123534724 -78793623 + THE1C-int LTR MaLR 94 1580 0 1499 176 94 63 chr4 123534724 123535139 -78793208 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr4 123535423 123535444 -78792903 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 123535530 123535557 -78792790 + AT_rich Low_complexity Low_complexity 1 27 0 285 330 205 9 chr4 123535749 123535964 -78792383 - MIR SINE MIR 0 262 6 2497 67 0 22 chr4 123536009 123536325 -78792022 + AluY SINE Alu 3 311 0 23 54 0 0 chr4 123536504 123536541 -78791806 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 123536853 123536874 -78791473 + AT_rich Low_complexity Low_complexity 1 21 0 271 135 0 0 chr4 123537608 123537645 -78790702 - U6 snRNA snRNA -70 37 1 461 211 94 0 chr4 123538374 123538502 -78789845 - L1MA9 LINE L1 -1 6311 6172 25 31 0 0 chr4 123539246 123539278 -78789069 + AT_rich Low_complexity Low_complexity 1 32 0 2099 98 7 29 chr4 123539656 123539962 -78788385 + AluSq SINE Alu 1 299 -14 26 30 0 0 chr4 123540031 123540064 -78788283 + AT_rich Low_complexity Low_complexity 1 33 0 31 44 0 0 chr4 123540402 123540447 -78787900 + AT_rich Low_complexity Low_complexity 1 45 0 1070 241 10 48 chr4 123540552 123540863 -78787484 - L1MA10 LINE L1 -1 6333 6035 2138 194 42 44 chr4 123540963 123541578 -78786769 + MER31-int LTR ERV1 893 1506 -3430 22 0 0 0 chr4 123541595 123541617 -78786730 + AT_rich Low_complexity Low_complexity 1 22 0 648 210 54 31 chr4 123541617 123541841 -78786506 + MER31-int LTR ERV1 1683 1911 -3025 334 343 73 0 chr4 123542103 123542240 -78786107 + MIR SINE MIR 2 148 -114 27 49 0 0 chr4 123542428 123542469 -78785878 + AT_rich Low_complexity Low_complexity 1 41 0 1046 134 12 12 chr4 123542724 123542896 -78785451 - THE1C LTR MaLR -203 172 1 2042 179 29 8 chr4 123542908 123543283 -78785064 - MSTB LTR MaLR -23 403 21 257 280 48 21 chr4 123543419 123543605 -78784742 + L1MDa LINE L1 1885 2075 -4465 366 23 0 0 chr4 123543606 123543649 -78784698 + (TA)n Simple_repeat Simple_repeat 2 44 0 2214 76 3 51 chr4 123543650 123543965 -78784382 + AluY SINE Alu 1 300 -11 234 280 159 23 chr4 123543987 123544472 -78783875 + L1MDa LINE L1 2223 2773 -3948 335 284 126 23 chr4 123544499 123544714 -78783633 + L1MDa LINE L1 2778 3014 -3526 751 261 105 7 chr4 123544729 123545005 -78783342 + L1ME3A LINE L1 5859 6161 -9 21 0 0 0 chr4 123545235 123545256 -78783091 + AT_rich Low_complexity Low_complexity 1 21 0 615 105 0 0 chr4 123545648 123545743 -78782604 + L1MA5 LINE L1 6206 6300 0 21 0 0 0 chr4 123546108 123546129 -78782218 + AT_rich Low_complexity Low_complexity 1 21 0 29 78 0 0 chr4 123546417 123546481 -78781866 + AT_rich Low_complexity Low_complexity 1 64 0 1859 159 0 10 chr4 123546538 123546834 -78781513 + AluSx SINE Alu 5 297 -15 958 323 31 42 chr4 123548058 123548516 -78779831 - L2 LINE L2 -5 3308 2856 1291 253 45 30 chr4 123548704 123549167 -78779180 - L1MD1 LINE L1 -336 5906 5437 273 238 12 12 chr4 123549179 123549259 -78779088 - L1MC2 LINE L1 -13 6331 6252 530 299 66 116 chr4 123550057 123550753 -78777594 - L2 LINE L2 -978 2336 1676 3601 229 77 16 chr4 123551290 123552339 -78776008 + L1MC3 LINE L1 6573 7685 -100 33 0 0 0 chr4 123552367 123552400 -78775947 + AT_rich Low_complexity Low_complexity 1 33 0 1330 275 77 45 chr4 123552592 123553510 -78774837 - L1ME1 LINE L1 -10 6156 5195 2284 91 0 0 chr4 123553510 123553806 -78774541 - AluY SINE Alu -15 296 1 1330 275 77 45 chr4 123553806 123553878 -78774469 - L1ME1 LINE L1 -971 5195 5127 1546 150 0 59 chr4 123554058 123554364 -78773983 - L1PB4 LINE L1 -13 6143 5856 6963 204 31 6 chr4 123554364 123555991 -78772356 + L1 LINE L1 2388 4055 -2091 494 232 70 43 chr4 123555991 123556176 -78772171 + L1 LINE L1 4401 4590 -1556 1084 310 44 41 chr4 123556189 123557300 -78771047 - L1ME1 LINE L1 -1243 4903 3753 269 139 0 0 chr4 123557696 123557739 -78770608 - tRNA-Cys-TGC tRNA tRNA -32 43 1 1174 110 0 0 chr4 123558652 123558834 -78769513 - AluSp SINE Alu 0 313 132 2155 122 0 7 chr4 123559298 123559602 -78768745 + AluSg SINE Alu 9 310 0 22 0 0 0 chr4 123560448 123560470 -78767877 + AT_rich Low_complexity Low_complexity 1 22 0 4007 272 32 15 chr4 123560875 123562354 -78765993 + L1P LINE L1 1805 3308 -2838 3602 70 34 2 chr4 123562354 123562829 -78765518 - LTR2B LTR ERV1 0 490 1 5988 122 2 14 chr4 123562829 123563711 -78764636 - Harlequin LTR ERV1 0 6896 6025 1240 136 116 39 chr4 123563822 123564176 -78764171 - MER67D LTR ERV1 -241 273 3 357 75 0 0 chr4 123564223 123564276 -78764071 + (TTG)n Simple_repeat Simple_repeat 2 54 0 591 303 81 13 chr4 123564436 123564670 -78763677 - L1MCb LINE L1 -5578 467 218 2003 101 10 52 chr4 123565079 123565386 -78762961 - AluSx SINE Alu -13 299 6 222 304 9 104 chr4 123565454 123565569 -78762778 + L2 LINE L2 3163 3266 -6 438 291 78 0 chr4 123565672 123565851 -78762496 + MIR SINE MIR 68 260 -2 1358 110 16 75 chr4 123565852 123566107 -78762240 + MER50 LTR ERV1 1 240 -494 1057 108 7 198 chr4 123566090 123566368 -78761979 + MER50 LTR ERV1 433 657 -77 * 1275 43 0 0 chr4 123566379 123566541 -78761806 - L1PA4 LINE L1 0 6155 5994 314 50 0 0 chr4 123566541 123566581 -78761766 + L1PA5 LINE L1 5858 5897 -257 522 191 0 11 chr4 123566581 123566675 -78761672 + MER50 LTR ERV1 640 732 -2 253 415 29 22 chr4 123567375 123567650 -78760697 + L3 LINE CR1 1018 1294 -283 678 223 66 12 chr4 123567749 123567915 -78760432 - MER5B DNA MER1_type 0 178 4 227 304 71 27 chr4 123568124 123568236 -78760111 + L2 LINE L2 3179 3295 -18 201 221 44 44 chr4 123568401 123568469 -78759878 - MIR SINE MIR -145 117 50 1812 168 3 0 chr4 123568560 123568845 -78759502 + MER1B DNA MER1_type 5 290 -49 21 0 0 0 chr4 123569012 123569033 -78759314 + AT_rich Low_complexity Low_complexity 1 21 0 2277 49 42 3 chr4 123571306 123571592 -78756755 + AluY SINE Alu 1 297 -14 378 305 92 54 chr4 123572108 123572347 -78756000 + MLT1H LTR MaLR 71 318 -231 360 243 29 73 chr4 123572426 123572562 -78755785 + MLT1H LTR MaLR 418 547 -2 1099 222 89 19 chr4 123573491 123573849 -78754498 + L1MB5 LINE L1 5386 5717 -457 210 71 0 0 chr4 123573849 123573877 -78754470 + (TG)n Simple_repeat Simple_repeat 2 29 0 1099 222 89 19 chr4 123573877 123574143 -78754204 + L1MB5 LINE L1 5717 6164 -10 29 60 0 0 chr4 123574550 123574600 -78753747 + AT_rich Low_complexity Low_complexity 1 50 0 2042 86 19 48 chr4 123574714 123575027 -78753320 + AluY SINE Alu 1 304 -7 2225 64 7 0 chr4 123575266 123575577 -78752770 + AluY SINE Alu 2 314 0 188 0 74 0 chr4 123576107 123576134 -78752213 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 380 131 0 0 chr4 123576134 123576195 -78752152 - AluJ/FRAM SINE Alu -18 284 224 940 249 39 90 chr4 123576858 123577746 -78750601 - MER52A LTR ERV1 -3 1752 654 301 255 20 20 chr4 123578331 123578433 -78749914 + MER94 DNA DNA 7 108 -26 211 273 23 30 chr4 123578728 123578860 -78749487 + (CATATA)n Simple_repeat Simple_repeat 4 134 0 1773 155 3 78 chr4 123579461 123579822 -78748525 - MER1B DNA MER1_type -3 334 1 641 315 22 8 chr4 123580206 123580473 -78747874 + L1ME1 LINE L1 5896 6166 0 246 81 0 0 chr4 123580901 123580938 -78747409 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 974 100 22 22 chr4 123580938 123581118 -78747229 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1362 192 37 4 chr4 123581123 123581277 -78747070 - AluJb SINE Alu -32 280 112 342 0 0 0 chr4 123581277 123581315 -78747032 + (TG)n Simple_repeat Simple_repeat 1 38 0 1362 192 37 4 chr4 123581315 123581431 -78746916 - AluJb SINE Alu -200 112 1 1813 169 43 22 chr4 123581519 123582074 -78746273 - L1M2 LINE L1 -607 5705 5149 2494 119 0 14 chr4 123582633 123583004 -78745343 + THE1C LTR MaLR 1 366 -9 2580 127 111 5 chr4 123583004 123583453 -78744894 + THE1C-int LTR MaLR 2 498 -1082 216 0 0 0 chr4 123584203 123584227 -78744120 + (A)n Simple_repeat Simple_repeat 1 24 0 877 150 157 0 chr4 123584227 123584380 -78743967 + THE1C-int LTR MaLR 480 656 -924 1705 142 30 20 chr4 123584899 123585202 -78743145 + AluSx SINE Alu 1 306 -6 305 109 18 0 chr4 123585278 123585333 -78743014 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 272 373 93 0 chr4 123586202 123586363 -78741984 - MER5B DNA MER1_type -2 176 1 359 288 91 0 chr4 123586415 123586547 -78741800 - MLT1L LTR MaLR -55 560 417 683 60 28 44 chr4 123587034 123587216 -78741131 + (TA)n Simple_repeat Simple_repeat 2 180 0 4490 184 28 32 chr4 123588981 123589844 -78738503 - L1MB3 LINE L1 -7 6176 5304 2155 169 49 16 chr4 123589844 123590275 -78738072 - MER65A LTR ERV1 0 445 1 4490 184 28 32 chr4 123590275 123590710 -78737637 - L1MB3 LINE L1 -879 5304 4869 458 330 44 15 chr4 123591876 123592079 -78736268 + MIR SINE MIR 3 211 -51 33 43 0 0 chr4 123592158 123592205 -78736142 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr4 123592526 123592555 -78735792 + AT_rich Low_complexity Low_complexity 1 29 0 1442 259 25 49 chr4 123592787 123593193 -78735154 + MER77 LTR ERV1 207 602 -3 480 271 15 74 chr4 123593210 123593479 -78734868 - L1ME2 LINE L1 -158 6006 5754 498 235 25 31 chr4 123593494 123593656 -78734691 - PABL_B LTR ERV1 -70 597 437 596 213 22 0 chr4 123593787 123593923 -78734424 - L1ME2 LINE L1 -396 5768 5630 263 61 0 0 chr4 123593976 123594009 -78734338 - U2 snRNA snRNA -155 33 1 429 260 0 84 chr4 123594009 123594163 -78734184 - L1ME2 LINE L1 -623 5541 5401 278 192 0 13 chr4 123594169 123594247 -78734100 + GA-rich Low_complexity Low_complexity 1 77 0 387 274 89 48 chr4 123594785 123595033 -78733314 - L1ME2 LINE L1 -890 5256 4999 380 330 0 0 chr4 123595131 123595240 -78733107 - FLAM_A SINE Alu -23 110 2 419 273 50 79 chr4 123595252 123595630 -78732717 - L1ME2 LINE L1 -1999 4147 3781 53 17 0 0 chr4 123595630 123595690 -78732657 + AT_rich Low_complexity Low_complexity 1 60 0 567 273 100 50 chr4 123595726 123596305 -78732042 - L1ME2 LINE L1 -2527 3619 3012 2498 128 0 3 chr4 123596854 123597230 -78731117 - THE1C LTR MaLR 0 375 1 4047 151 11 8 chr4 123597230 123597894 -78730453 - THE1C-int LTR MaLR 0 1580 915 214 300 38 38 chr4 123598649 123598729 -78729618 - MER5B DNA MER1_type -98 80 1 236 210 48 0 chr4 123598972 123599034 -78729313 + MER103 DNA DNA 39 103 -63 21 0 0 0 chr4 123599265 123599286 -78729061 + AT_rich Low_complexity Low_complexity 1 21 0 743 328 66 11 chr4 123599628 123599994 -78728353 + ERVL LTR ERVL 3092 3477 -2287 335 316 110 42 chr4 123600500 123600737 -78727610 + ERVL LTR ERVL 4070 4322 -1332 842 308 105 22 chr4 123600748 123601118 -78727229 + LTR40a LTR ERVL 1 401 -118 342 278 111 8 chr4 123601261 123601387 -78726960 + ERVL LTR ERVL 4432 4570 -1194 32 43 0 0 chr4 123601402 123601448 -78726899 + AT_rich Low_complexity Low_complexity 1 46 0 427 283 0 0 chr4 123601676 123601789 -78726558 + ERVL LTR ERVL 4912 5024 -740 1605 282 31 7 chr4 123602169 123602620 -78725727 - LTR16C LTR ERVL -4 487 26 27 49 0 0 chr4 123604100 123604141 -78724206 + AT_rich Low_complexity Low_complexity 1 41 0 4903 223 68 32 chr4 123604163 123604649 -78723698 - L1MA9 LINE L1 -6 7266 6799 765 189 0 0 chr4 123604649 123604776 -78723571 + FLAM_C SINE Alu 1 127 -6 4903 223 68 32 chr4 123604776 123605333 -78723014 - L1MA9 LINE L1 -473 6799 6263 2106 121 3 0 chr4 123605333 123605630 -78722717 + AluSq SINE Alu 1 298 -15 4903 223 68 32 chr4 123605630 123606947 -78721400 - L1MA9 LINE L1 -1009 6263 4867 1283 178 10 86 chr4 123606947 123607250 -78721097 - LTR4 LTR ERV1 0 596 317 3752 116 8 0 chr4 123607479 123607996 -78720351 - HERV3 LTR ERV1 0 8426 7906 * 16747 138 44 10 chr4 123607979 123610788 -78717559 - HERV3 LTR ERV1 -1704 6871 3776 7170 150 24 12 chr4 123610760 123611912 -78716435 - HERV3 LTR ERV1 -6987 1439 274 * 1994 185 31 8 chr4 123611900 123612257 -78716090 - HERV3 LTR ERV1 -8060 366 2 * 1216 176 13 86 chr4 123612257 123612559 -78715788 - LTR4 LTR ERV1 0 596 317 329 191 16 0 chr4 123612575 123612638 -78715709 - LTR4 LTR ERV1 -239 357 294 3969 221 71 26 chr4 123612782 123613089 -78715258 - L1MA9 LINE L1 -2236 4870 4578 5436 59 0 1 chr4 123613089 123613779 -78714568 + L1PA5 LINE L1 5462 6150 -4 3969 221 71 26 chr4 123613779 123613986 -78714361 - L1MA9 LINE L1 -2528 4578 4382 393 88 0 216 chr4 123613986 123614088 -78714259 + MADE1 DNA Mariner 1 80 0 3969 221 71 26 chr4 123614088 123614863 -78713484 - L1MA9 LINE L1 -2724 4382 3522 1046 216 38 17 chr4 123614933 123615169 -78713178 - L1MA9 LINE L1 -6789 241 1 22 0 0 0 chr4 123615526 123615548 -78712799 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr4 123615697 123615744 -78712603 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr4 123616665 123616686 -78711661 + AT_rich Low_complexity Low_complexity 1 21 0 347 301 65 38 chr4 123617215 123617401 -78710946 - MLT1H LTR MaLR -255 294 104 556 346 106 18 chr4 123617814 123618155 -78710192 - LTR16A LTR ERVL -49 401 31 21 36 0 0 chr4 123618738 123618766 -78709581 + AT_rich Low_complexity Low_complexity 1 28 0 793 287 51 53 chr4 123618989 123619497 -78708850 + L1M4 LINE L1 4019 4525 -1621 924 257 31 55 chr4 123619517 123619902 -78708445 + L1M4 LINE L1 4695 5070 -1076 3011 157 80 27 chr4 123619943 123620847 -78707500 + L1MA6 LINE L1 126 1159 -5704 6665 104 33 8 chr4 123620881 123621945 -78706402 + L1MA6 LINE L1 1465 2555 -4308 3091 206 11 26 chr4 123621937 123622161 -78706186 + L1MA6 LINE L1 3759 3985 -2877 * 1760 89 55 62 chr4 123622161 123622452 -78705895 + AluY SINE Alu 23 311 0 3091 206 11 26 chr4 123622452 123622985 -78705362 + L1MA6 LINE L1 3985 4504 -2358 510 113 0 0 chr4 123622986 123623057 -78705290 - AluJ/FLAM SINE Alu -236 76 6 5361 184 30 42 chr4 123623064 123624984 -78703363 + L1MA6 LINE L1 5130 7016 0 183 42 0 0 chr4 123625055 123625079 -78703268 + (TA)n Simple_repeat Simple_repeat 1 24 0 28 0 0 0 chr4 123625104 123625132 -78703215 + AT_rich Low_complexity Low_complexity 1 28 0 514 263 139 13 chr4 123625137 123625438 -78702909 + L1M4 LINE L1 4521 4859 -1287 690 306 50 35 chr4 123626006 123626665 -78701682 - L1MDb LINE L1 -1446 4960 4292 194 114 0 68 chr4 123626736 123626780 -78701567 + (GA)n Simple_repeat Simple_repeat 1 41 0 308 299 58 79 chr4 123627096 123627374 -78700973 + LTR16C LTR ERVL 198 469 -22 3135 242 118 69 chr4 123627777 123629440 -78698907 - L1MDb LINE L1 -2236 4170 2589 192 77 0 0 chr4 123629440 123629466 -78698881 + (CTTTG)n Simple_repeat Simple_repeat 2 27 0 3135 242 118 69 chr4 123629466 123629951 -78698396 - L1MDb LINE L1 -3817 2589 2129 791 222 0 0 chr4 123629951 123630095 -78698252 - AluJb SINE Alu -15 297 154 3135 242 118 69 chr4 123630095 123630434 -78697913 - L1MDb LINE L1 -4277 2129 1808 2148 108 20 0 chr4 123630434 123630739 -78697608 - AluY SINE Alu 0 311 1 3135 242 118 69 chr4 123630739 123631296 -78697051 - L1MDb LINE L1 -4598 1808 845 2193 135 0 0 chr4 123631421 123631733 -78696614 - AluSq SINE Alu -1 312 1 4722 70 8 0 chr4 123632617 123633230 -78695117 - L1PA6 LINE L1 -1 6153 5536 12226 68 4 0 chr4 123633236 123634860 -78693487 - L1PA6 LINE L1 -1078 5068 3439 873 226 9 5 chr4 123634854 123635075 -78693272 - L1 LINE L1 -3636 2510 2289 * 698 56 0 0 chr4 123635923 123636013 -78692334 - AluSg/x SINE Alu -18 292 203 * 752 44 0 0 chr4 123636010 123636101 -78692246 - AluY SINE Alu -202 109 19 4806 161 14 7 chr4 123636101 123636934 -78691413 - L1PA15 LINE L1 -9 6156 5318 33 43 0 0 chr4 123637768 123637815 -78690532 + AT_rich Low_complexity Low_complexity 1 47 0 38 51 0 0 chr4 123638016 123638075 -78690272 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr4 123639279 123639300 -78689047 + AT_rich Low_complexity Low_complexity 1 21 0 238 195 61 73 chr4 123640673 123640755 -78687592 + L1MC/D LINE L1 5706 5786 -2022 23 33 0 0 chr4 123642814 123642844 -78685503 + AT_rich Low_complexity Low_complexity 1 30 0 558 181 0 11 chr4 123643884 123644005 -78684342 + FLAM_A SINE Alu 23 142 0 22 56 0 0 chr4 123644039 123644075 -78684272 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chr4 123644454 123644482 -78683865 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr4 123644928 123644959 -78683388 + AT_rich Low_complexity Low_complexity 1 31 0 241 338 117 7 chr4 123645875 123646020 -78682327 - MIR SINE MIR -30 232 72 3667 195 35 8 chr4 123646562 123647276 -78681071 + MER44D DNA MER2_type 1 605 0 195 162 0 0 chr4 123649165 123649202 -78679145 + CT-rich Low_complexity Low_complexity 3 39 0 2174 133 14 8 chr4 123650812 123651165 -78677182 + THE1A LTR MaLR 1 355 0 10977 115 6 1 chr4 123651165 123652736 -78675611 + THE1A-int LTR MaLR 1 1580 0 2241 119 11 8 chr4 123652738 123653090 -78675257 + THE1A LTR MaLR 3 355 0 2897 234 48 68 chr4 123654490 123655358 -78672989 + L1MCb LINE L1 39 923 -5641 480 96 12 48 chr4 123655358 123655441 -78672906 - MADE1 DNA Mariner 0 80 1 2897 234 48 68 chr4 123655441 123655991 -78672356 + L1MCb LINE L1 923 1483 -5081 2158 96 6 43 chr4 123655991 123656314 -78672033 + AluSq SINE Alu 1 311 -2 2897 234 48 68 chr4 123656314 123656669 -78671678 + L1MCb LINE L1 1483 1873 -4691 2238 103 7 0 chr4 123656669 123656971 -78671376 - AluSc SINE Alu -5 304 1 2897 234 48 68 chr4 123656971 123657163 -78671184 + L1MCb LINE L1 1873 2067 -4497 207 0 0 0 chr4 123658538 123658561 -78669786 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 393 236 159 101 chr4 123658728 123658986 -78669361 + L3 LINE CR1 440 712 -865 242 254 127 51 chr4 123659010 123659128 -78669219 + L2 LINE L2 3187 3313 0 22 56 0 0 chr4 123659943 123659979 -78668368 + AT_rich Low_complexity Low_complexity 1 36 0 23 78 0 0 chr4 123660442 123660493 -78667854 + AT_rich Low_complexity Low_complexity 1 51 0 198 0 0 0 chr4 123661121 123661143 -78667204 + (TG)n Simple_repeat Simple_repeat 1 22 0 2568 159 27 12 chr4 123661424 123661907 -78666440 - L1PA16 LINE L1 -1 6165 5676 2328 179 53 20 chr4 123662285 123662778 -78665569 - LTR22 LTR ERVK 0 509 1 25 31 0 0 chr4 123662853 123662885 -78665462 + AT_rich Low_complexity Low_complexity 1 32 0 6188 203 34 14 chr4 123663048 123665481 -78662866 + L1PA16 LINE L1 3685 6166 0 1309 261 62 18 chr4 123665477 123665990 -78662357 + L1MB8 LINE L1 4824 5359 -787 * 1636 234 87 23 chr4 123665977 123666532 -78661815 + L1MB8 LINE L1 5587 6176 -2 2123 105 3 35 chr4 123666645 123666959 -78661388 - AluSx SINE Alu -8 304 1 642 232 89 5 chr4 123667253 123667443 -78660904 + L1MB3 LINE L1 18 223 -6161 524 215 13 129 chr4 123667467 123667778 -78660569 + L1MB3 LINE L1 2579 2853 -3529 310 196 21 93 chr4 123667787 123667884 -78660463 + L1MC4 LINE L1 6613 6702 -1340 209 83 28 0 chr4 123667885 123667921 -78660426 + (TA)n Simple_repeat Simple_repeat 2 38 0 7138 218 38 69 chr4 123667923 123669216 -78659131 + L1MB3 LINE L1 2882 4214 -2205 4372 105 46 20 chr4 123669216 123669925 -78658422 + L1PB1 LINE L1 5419 6149 -2 7138 218 38 69 chr4 123669925 123671428 -78656919 + L1MB3 LINE L1 4214 5546 -873 1660 129 3 84 chr4 123671428 123671767 -78656580 + AluSx SINE Alu 1 314 0 7138 218 38 69 chr4 123671767 123672598 -78655749 + L1MB3 LINE L1 5546 6402 -17 214 236 0 57 chr4 123673823 123673929 -78654418 + A-rich Low_complexity Low_complexity 5 104 0 31 0 0 0 chr4 123674272 123674303 -78654044 + AT_rich Low_complexity Low_complexity 1 31 0 782 312 41 47 chr4 123674391 123674753 -78653594 - MLT1H LTR MaLR -189 360 1 407 329 40 37 chr4 123674756 123675054 -78653293 + L1 LINE L1 4655 4953 -1193 1247 274 71 54 chr4 123675578 123676056 -78652291 + MER41E LTR ERV1 27 512 0 4009 159 18 10 chr4 123676471 123677148 -78651199 - MER50 LTR ERV1 -52 682 1 415 242 181 28 chr4 123677593 123677808 -78650539 - MLT1C LTR MaLR -61 406 159 32 0 0 0 chr4 123677891 123677923 -78650424 + AT_rich Low_complexity Low_complexity 1 32 0 454 327 143 25 chr4 123678675 123679152 -78649195 - HAL1b LINE L1 -544 804 272 484 200 108 73 chr4 123679790 123680050 -78648297 - LTR41 LTR ERVL -9 764 496 542 257 7 7 chr4 123680291 123680435 -78647912 - LTR41 LTR ERVL -629 144 1 2004 135 39 33 chr4 123680472 123680834 -78647513 + THE1B LTR MaLR 1 364 0 25 0 0 0 chr4 123681192 123681217 -78647130 + AT_rich Low_complexity Low_complexity 1 25 0 475 238 41 125 chr4 123681349 123681941 -78646406 - L1MEc LINE L1 -4722 1493 997 2015 168 6 0 chr4 123682013 123682347 -78646000 - MER46B DNA MER2_type -24 212 2 739 272 158 60 chr4 123682392 123682758 -78645589 - L1MEc LINE L1 -5505 891 464 775 241 18 0 chr4 123682758 123682924 -78645423 - FAM SINE Alu -5 170 2 739 272 158 60 chr4 123682924 123683043 -78645304 - L1MEc LINE L1 -5932 464 358 218 114 0 68 chr4 123683044 123683111 -78645236 + (TC)n Simple_repeat Simple_repeat 1 62 0 463 283 109 34 chr4 123683114 123683436 -78644911 - L1MEc LINE L1 -6015 381 36 465 111 0 0 chr4 123683484 123683565 -78644782 - L1PA13 LINE L1 -5 6158 6078 1961 138 24 0 chr4 123683615 123683905 -78644442 + AluSx SINE Alu 14 310 -2 21 36 0 0 chr4 123684776 123684804 -78643543 + AT_rich Low_complexity Low_complexity 1 28 0 29 60 0 0 chr4 123684992 123685042 -78643305 + AT_rich Low_complexity Low_complexity 1 50 0 800 108 199 12 chr4 123685613 123685779 -78642568 - THE1B LTR MaLR -167 197 1 10728 113 19 6 chr4 123685779 123687338 -78641009 - THE1B-int LTR MaLR 0 1580 2 952 141 16 57 chr4 123687339 123687531 -78640816 - THE1B LTR MaLR 0 364 181 22 70 0 0 chr4 123689137 123689180 -78639167 + AT_rich Low_complexity Low_complexity 1 43 0 22 80 0 0 chr4 123690045 123690095 -78638252 + AT_rich Low_complexity Low_complexity 1 50 0 2354 87 0 0 chr4 123690217 123690526 -78637821 + AluSc SINE Alu 1 309 0 288 0 0 0 chr4 123690530 123690562 -78637785 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 240 289 91 29 chr4 123690839 123691047 -78637300 - HAL1b LINE L1 -814 534 314 4362 176 46 14 chr4 123691106 123692017 -78636330 - L1MA7 LINE L1 -97 6194 5255 545 134 54 0 chr4 123692030 123692142 -78636205 + L1MA7 LINE L1 6174 6291 0 35 24 0 0 chr4 123692767 123692809 -78635538 + AT_rich Low_complexity Low_complexity 1 42 0 38 22 0 0 chr4 123693881 123693926 -78634421 + AT_rich Low_complexity Low_complexity 1 45 0 438 116 23 70 chr4 123693927 123694013 -78634334 - FRAM SINE Alu -19 157 76 1051 224 104 44 chr4 123694721 123694833 -78633514 - MER92A LTR ERV1 -5 407 303 246 32 0 0 chr4 123694833 123694864 -78633483 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1051 224 104 44 chr4 123694864 123695135 -78633212 - MER92A LTR ERV1 -109 303 1 440 274 144 18 chr4 123696130 123696470 -78631877 - L1M4 LINE L1 -1068 5078 4696 328 186 52 0 chr4 123696480 123696577 -78631770 - L1M4 LINE L1 -3245 2901 2800 34 55 0 0 chr4 123698578 123698633 -78629714 + AT_rich Low_complexity Low_complexity 1 55 0 376 330 0 0 chr4 123698702 123698817 -78629530 - MER58A DNA MER1_type 0 119 5 2208 118 98 8 chr4 123699212 123699601 -78628746 + MSTA LTR MaLR 5 428 0 1678 139 3 41 chr4 123700687 123700981 -78627366 + LTR36 LTR ERV1 1 283 -328 * 2167 178 39 27 chr4 123700965 123701375 -78626972 + LTR36 LTR ERV1 197 611 0 751 282 63 25 chr4 123701375 123701691 -78626656 + ERVL LTR ERVL 2188 2515 -3249 22 35 0 0 chr4 123701873 123701902 -78626445 + AT_rich Low_complexity Low_complexity 1 29 0 216 67 0 0 chr4 123702079 123702109 -78626238 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1488 207 23 0 chr4 123702706 123703011 -78625336 - AluJo SINE Alu 0 312 1 30 0 0 0 chr4 123703040 123703070 -78625277 + AT_rich Low_complexity Low_complexity 1 30 0 977 255 36 53 chr4 123703389 123703458 -78624889 - MLT1E3 LTR MaLR 0 624 555 1427 162 44 44 chr4 123703458 123703754 -78624593 + AluJo SINE Alu 5 300 -2 977 255 36 53 chr4 123703754 123703986 -78624361 - MLT1E3 LTR MaLR -69 555 328 2007 165 8 3 chr4 123704028 123704391 -78623956 - L1MA3 LINE L1 -64 6241 5877 444 291 83 86 chr4 123704383 123704917 -78623430 - HAL1 LINE L1 -592 1915 1381 * 2000 97 7 7 chr4 123704917 123705216 -78623131 - L1PA13 LINE L1 0 6163 5865 444 291 83 86 chr4 123705216 123705231 -78623116 - HAL1 LINE L1 -1126 1381 1367 2202 95 3 3 chr4 123705231 123705527 -78622820 - AluSp SINE Alu -17 296 1 444 291 83 86 chr4 123705527 123705778 -78622569 - HAL1 LINE L1 -1140 1367 1116 22 0 0 0 chr4 123706017 123706039 -78622308 + AT_rich Low_complexity Low_complexity 1 22 0 5222 209 38 25 chr4 123706130 123707144 -78621203 + Cheshire DNA MER1_type 1 1000 -1420 2361 71 14 0 chr4 123707144 123707438 -78620909 + AluSg1 SINE Alu 2 299 -10 5222 209 38 25 chr4 123707438 123708503 -78619844 + Cheshire DNA MER1_type 1000 2189 -231 830 221 6 0 chr4 123708508 123708667 -78619680 - MLT1B LTR MaLR 0 467 308 2304 154 8 16 chr4 123708667 123709049 -78619298 - MER65A LTR ERV1 0 445 67 872 254 5 5 chr4 123709063 123709264 -78619083 - MLT1B LTR MaLR -188 202 2 345 206 71 24 chr4 123709270 123709396 -78618951 + Cheshire DNA MER1_type 2193 2324 -96 445 210 20 76 chr4 123709639 123709756 -78618591 + MER5A DNA MER1_type 58 178 -11 3891 129 13 9 chr4 123709909 123710542 -78617805 - MER41B LTR ERV1 0 635 1 1720 291 51 68 chr4 123710542 123711425 -78616922 - HERV16 LTR ERVL -3568 1428 561 353 317 97 55 chr4 123711884 123712052 -78616295 - LTR16B LTR ERVL 0 464 305 2072 134 0 10 chr4 123712052 123712359 -78615988 + AluSx SINE Alu 1 304 -8 353 317 97 55 chr4 123712359 123712594 -78615753 - LTR16B LTR ERVL -159 305 44 261 0 0 0 chr4 123714200 123714229 -78614118 + (TG)n Simple_repeat Simple_repeat 1 29 0 4145 246 40 37 chr4 123714449 123716889 -78611458 - L1MC2 LINE L1 -23 6601 4155 1206 261 77 5 chr4 123716887 123717447 -78610900 - L1MC2 LINE L1 -2793 3633 3034 * 9929 158 16 13 chr4 123717444 123720142 -78608205 - L1PA13 LINE L1 -21 7580 4876 4885 175 57 1 chr4 123720169 123721025 -78607322 - L1PA13 LINE L1 -6671 910 7 3823 239 109 29 chr4 123721047 123721810 -78606537 - L1MC2 LINE L1 -3379 3047 2347 779 222 95 5 chr4 123721810 123721999 -78606348 - MER6B DNA MER2_type -3 207 2 3823 239 109 29 chr4 123721999 123722291 -78606056 - L1MC2 LINE L1 -4079 2347 2080 1696 167 133 16 chr4 123722291 123722674 -78605673 - MSTA LTR MaLR 0 428 1 3823 239 109 29 chr4 123722674 123722859 -78605488 - L1MC2 LINE L1 -4346 2080 1911 219 36 0 0 chr4 123722859 123722887 -78605460 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3823 239 109 29 chr4 123722887 123723678 -78604669 - L1MC2 LINE L1 -4515 1911 1185 652 136 61 45 chr4 123723678 123723810 -78604537 + L1PA16 LINE L1 6033 6166 0 3823 239 109 29 chr4 123723810 123724462 -78603885 - L1MC2 LINE L1 -5241 1185 6 26 0 0 0 chr4 123724527 123724553 -78603794 + AT_rich Low_complexity Low_complexity 1 26 0 5745 204 22 30 chr4 123724553 123725364 -78602983 - L1PB4 LINE L1 -6 6853 6036 2039 134 6 19 chr4 123725364 123725677 -78602670 - AluSx SINE Alu -3 309 1 5745 204 22 30 chr4 123725677 123727169 -78601178 - L1PB4 LINE L1 -823 6036 4584 4097 233 42 40 chr4 123727176 123729552 -78598795 - L1PB4 LINE L1 -3042 3807 1335 258 262 0 0 chr4 123729537 123729598 -78598749 - L1PB4 LINE L1 -5286 1563 1503 * 1446 140 0 0 chr4 123730146 123730367 -78597980 - L1P LINE L1 -1046 5100 4880 715 170 210 12 chr4 123730652 123730843 -78597504 + THE1C LTR MaLR 1 228 -170 360 286 25 50 chr4 123730864 123731025 -78597322 - MLT1H LTR MaLR -392 157 1 2151 78 7 10 chr4 123731761 123732054 -78596293 + AluY SINE Alu 19 310 -1 212 0 36 0 chr4 123732083 123732111 -78596236 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 980 171 0 6 chr4 123732244 123732402 -78595945 + FRAM SINE Alu 1 156 -20 1058 171 6 163 chr4 123732615 123732965 -78595382 + AluJo SINE Alu 1 295 -7 31 82 0 0 chr4 123735251 123735324 -78593023 + AT_rich Low_complexity Low_complexity 1 73 0 1100 248 45 81 chr4 123735372 123735856 -78592491 - MLT1C LTR MaLR 0 467 1 2194 107 0 0 chr4 123736001 123736299 -78592048 + AluSc SINE Alu 3 300 -9 181 222 183 48 chr4 123736305 123736431 -78591916 - MIR SINE MIR -18 244 102 273 355 18 53 chr4 123736470 123736639 -78591708 - MER5A DNA MER1_type 0 189 27 675 65 0 0 chr4 123737203 123737296 -78591051 + (GGAA)n Simple_repeat Simple_repeat 3 95 0 21 57 0 0 chr4 123737386 123737421 -78590926 + AT_rich Low_complexity Low_complexity 1 35 0 204 331 123 18 chr4 123737728 123737891 -78590456 + MIR SINE MIR 33 212 -50 22 0 0 0 chr4 123738241 123738263 -78590084 + AT_rich Low_complexity Low_complexity 1 22 0 1758 196 40 11 chr4 123738389 123738742 -78589605 + MLT1A1 LTR MaLR 1 363 -2 3981 192 53 10 chr4 123738744 123739553 -78588794 + MLT1A1-int LTR MaLR 1 844 -891 821 259 13 63 chr4 123739613 123739930 -78588417 - MLT-int LTR MaLR -546 1189 889 740 330 116 3 chr4 123741517 123741872 -78586475 + L1ME3A LINE L1 5701 6095 -75 4827 144 17 37 chr4 123742023 123743086 -78585261 + L1PA13 LINE L1 5118 6163 0 2262 87 6 3 chr4 123744389 123744711 -78583636 + L1PA10 LINE L1 5837 6159 -9 21 0 0 0 chr4 123744711 123744732 -78583615 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 123746600 123746624 -78581723 + AT_rich Low_complexity Low_complexity 1 24 0 251 361 0 0 chr4 123746933 123747005 -78581342 + L2 LINE L2 3234 3305 -8 21 82 0 0 chr4 123747337 123747386 -78580961 + AT_rich Low_complexity Low_complexity 1 49 0 711 199 96 66 chr4 123748370 123748536 -78579811 - MER21B LTR ERV1 -347 584 330 1898 141 0 0 chr4 123748643 123748926 -78579421 + AluSx SINE Alu 1 283 -29 453 36 0 0 chr4 123748927 123748982 -78579365 + (CATA)n Simple_repeat Simple_repeat 3 57 0 1510 260 84 17 chr4 123749592 123750130 -78578217 - L1MC4 LINE L1 -202 7840 7267 723 343 102 35 chr4 123750267 123750921 -78577426 - L2 LINE L2 -1800 1514 817 1199 242 21 50 chr4 123751536 123751912 -78576435 - MLT1A1 LTR MaLR 0 365 1 245 255 0 0 chr4 123752127 123752178 -78576169 - L1ME3A LINE L1 -29 6141 6091 256 323 0 0 chr4 123752415 123752480 -78575867 + L1MC/D LINE L1 5600 5664 -2144 25 83 0 0 chr4 123752481 123752541 -78575806 + AT_rich Low_complexity Low_complexity 1 60 0 23 68 0 0 chr4 123753148 123753192 -78575155 + AT_rich Low_complexity Low_complexity 1 44 0 2335 235 61 4 chr4 123753198 123753722 -78574625 - MER68 LTR ERV1 0 562 9 227 141 62 62 chr4 123753952 123754016 -78574331 - MLT1J2 LTR MaLR -29 421 358 300 183 107 38 chr4 123754113 123754244 -78574103 - MLT1I LTR MaLR -232 183 101 254 356 40 27 chr4 123754916 123755065 -78573282 + MIR SINE MIR 112 262 0 505 136 0 18 chr4 123757326 123757436 -78570911 + (CA)n Simple_repeat Simple_repeat 2 109 0 7888 16 1 1 chr4 123757484 123759073 -78569274 - L1HS LINE L1 0 6155 4567 7643 28 0 0 chr4 123759071 123759979 -78568368 + L1HS LINE L1 3653 4560 -1586 * 1995 107 11 0 chr4 123760479 123760749 -78567598 + AluSx SINE Alu 30 302 -10 1339 177 13 119 chr4 123760770 123761165 -78567182 - L1MC2 LINE L1 -188 6156 5804 312 298 0 0 chr4 123761160 123761244 -78567103 - L1MA10 LINE L1 -72 6262 6179 * 2114 117 0 0 chr4 123761351 123761633 -78566714 - AluSq SINE Alu -29 284 3 1753 248 27 28 chr4 123761689 123762291 -78566056 - L1M4 LINE L1 -1198 4948 4348 592 229 0 19 chr4 123762291 123762448 -78565899 + L1MC1 LINE L1 3893 4046 -2100 1728 222 12 6 chr4 123762453 123762791 -78565556 + MLT1A1 LTR MaLR 5 344 -21 3959 239 39 15 chr4 123762832 123764261 -78564086 + L1MC1 LINE L1 4040 5502 -751 1025 204 43 13 chr4 123764261 123764491 -78563856 + L1MC1 LINE L1 6088 6324 -9 3172 222 103 32 chr4 123764498 123765569 -78562778 - L1M4 LINE L1 -1784 4362 3216 31 58 0 0 chr4 123765850 123765902 -78562445 + AT_rich Low_complexity Low_complexity 1 52 0 559 347 25 0 chr4 123765989 123766234 -78562113 - LTR16C LTR ERVL -11 480 230 868 111 32 0 chr4 123766820 123766946 -78561401 + AluSq/x SINE Alu 5 134 -179 1646 180 7 0 chr4 123766952 123767247 -78561100 + AluSx SINE Alu 6 302 -10 264 294 29 10 chr4 123767281 123767383 -78560964 - HERVL LTR ERVL -1701 3953 3850 1626 207 31 57 chr4 123767494 123767919 -78560428 - MLT2D LTR ERVL 0 414 1 344 355 39 17 chr4 123768096 123768327 -78560020 - HERVL LTR ERVL -1959 3526 3291 623 373 58 22 chr4 123768511 123768956 -78559391 - HERVL LTR ERVL -1910 3086 2626 940 307 34 20 chr4 123769329 123769684 -78558663 - HERVL LTR ERVL -3389 2375 2016 287 391 13 36 chr4 123769830 123769967 -78558380 - HERVL LTR ERVL -3863 1791 1652 192 40 0 0 chr4 123769967 123769992 -78558355 + (CA)n Simple_repeat Simple_repeat 2 26 0 287 391 13 36 chr4 123769992 123770161 -78558186 - HERVL LTR ERVL -4002 1652 1492 623 321 78 19 chr4 123771226 123771494 -78556853 - LTR16C LTR ERVL -4 487 204 22 56 0 0 chr4 123771856 123771892 -78556455 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr4 123771905 123771931 -78556416 + AT_rich Low_complexity Low_complexity 1 26 0 1381 218 8 42 chr4 123772712 123773089 -78555258 + MLT1A1 LTR MaLR 1 364 -1 1140 202 88 19 chr4 123773096 123773412 -78554935 + MLT1A1 LTR MaLR 5 349 -16 1018 257 97 24 chr4 123774500 123774881 -78553466 - MLT1C LTR MaLR 0 467 59 376 194 0 15 chr4 123775035 123775102 -78553245 - MER50 LTR ERV1 -211 523 458 2102 110 10 0 chr4 123775437 123775728 -78552619 - AluSp SINE Alu -19 294 1 521 182 309 12 chr4 123775893 123776022 -78552325 + L1MC3 LINE L1 6691 6780 -1005 267 31 0 0 chr4 123776022 123776054 -78552293 + (CA)n Simple_repeat Simple_repeat 2 33 0 521 182 309 12 chr4 123776054 123776089 -78552258 + L1MC3 LINE L1 6780 6904 -881 3680 167 26 18 chr4 123776089 123776808 -78551539 - MER50 LTR ERV1 -9 725 1 464 171 164 7 chr4 123776814 123776966 -78551381 + L1MC3 LINE L1 6922 7097 -688 241 279 51 25 chr4 123776966 123777045 -78551302 + MLT1F1 LTR MaLR 35 115 -452 1816 218 74 20 chr4 123777048 123777590 -78550757 + L1MC3 LINE L1 7214 7784 -1 1843 157 0 3 chr4 123777944 123778237 -78550110 - AluSx SINE Alu -20 292 1 469 169 0 24 chr4 123779024 123779107 -78549240 - Tigger5 DNA MER2_type -1 2322 2242 4041 176 5 5 chr4 123779107 123779853 -78548494 + L1PA15 LINE L1 5418 6163 -2 504 103 0 46 chr4 123779957 123780044 -78548303 - Tigger5 DNA MER2_type -74 2249 2167 223 344 98 31 chr4 123780175 123780338 -78548009 + MIR3 SINE MIR 30 203 -5 28 61 0 0 chr4 123780540 123780589 -78547758 + AT_rich Low_complexity Low_complexity 1 49 0 210 71 0 0 chr4 123780811 123780839 -78547508 + (CA)n Simple_repeat Simple_repeat 1 28 0 2338 262 90 25 chr4 123781454 123782912 -78545435 + L1M3c LINE L1 795 2198 -4184 1526 154 76 62 chr4 123782932 123783302 -78545045 - THE1C LTR MaLR 0 375 1 491 244 35 44 chr4 123783303 123783532 -78544815 + L1M3c LINE L1 2474 2700 -3682 2168 195 54 159 chr4 123783540 123784831 -78543516 + L1M3c LINE L1 3089 4244 -2138 1013 224 55 103 chr4 123785159 123785352 -78542995 + MLT2C2 LTR ERVL 1 202 -262 2357 47 13 0 chr4 123785352 123785653 -78542694 - L1PA4 LINE L1 -3 6152 5848 1013 224 55 103 chr4 123785653 123785946 -78542401 + MLT2C2 LTR ERVL 202 464 0 621 285 57 132 chr4 123788573 123789857 -78538490 - L2 LINE L2 -124 3189 2004 185 163 47 0 chr4 123789957 123790000 -78538347 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 23 0 0 0 chr4 123790007 123790030 -78538317 + AT_rich Low_complexity Low_complexity 1 23 0 303 340 53 7 chr4 123790143 123790293 -78538054 - MIR SINE MIR -86 176 20 21 0 0 0 chr4 123791764 123791785 -78536562 + AT_rich Low_complexity Low_complexity 1 21 0 2683 142 21 6 chr4 123791785 123792271 -78536076 - L1MA3 LINE L1 0 6305 5813 15983 173 43 18 chr4 123792288 123792958 -78535389 - L1M1 LINE L1 -4430 3135 2483 1958 108 54 0 chr4 123792958 123793235 -78535112 - AluSg SINE Alu -6 304 13 15983 173 43 18 chr4 123793235 123795608 -78532739 - L1M1 LINE L1 -5082 2483 15 23 54 0 0 chr4 123795899 123795936 -78532411 + AT_rich Low_complexity Low_complexity 1 37 0 27 49 0 0 chr4 123795952 123795993 -78532354 + AT_rich Low_complexity Low_complexity 1 41 0 192 40 0 0 chr4 123796177 123796202 -78532145 + (TA)n Simple_repeat Simple_repeat 1 25 0 2063 313 55 28 chr4 123796204 123797058 -78531289 - HERVL40 LTR ERVL -1342 4188 3312 202 222 0 0 chr4 123797274 123797319 -78531028 + A-rich Low_complexity Low_complexity 4 48 0 21 36 0 0 chr4 123798089 123798117 -78530230 + AT_rich Low_complexity Low_complexity 1 28 0 1985 98 4 11 chr4 123798149 123798426 -78529921 + THE1C LTR MaLR 101 375 0 339 288 133 16 chr4 123800977 123801300 -78527047 + L1M4 LINE L1 3577 3937 -2209 237 279 23 0 chr4 123801363 123801449 -78526898 - L1 LINE L1 -1326 4820 4733 934 181 66 13 chr4 123801561 123801787 -78526560 + L1MA8 LINE L1 6053 6290 -1 207 100 0 0 chr4 123802263 123802293 -78526054 + (TTTTC)n Simple_repeat Simple_repeat 5 34 0 238 341 8 49 chr4 123802589 123802712 -78525635 - L2 LINE L2 -14 3299 3182 1524 236 35 29 chr4 123803350 123803750 -78524597 - L1PA16 LINE L1 -2 6164 5766 27 29 0 0 chr4 123804164 123804198 -78524149 + AT_rich Low_complexity Low_complexity 1 34 0 204 358 11 11 chr4 123804879 123804974 -78523373 + MIR3 SINE MIR 111 205 -3 22 0 0 0 chr4 123805369 123805391 -78522956 + AT_rich Low_complexity Low_complexity 1 22 0 41023 49 3 1 chr4 123805395 123811316 -78517031 - L1PA4 LINE L1 -4 6151 221 237 235 20 0 chr4 123811463 123811514 -78516833 - Tigger2 DNA MER2_type -2666 52 1 370 324 39 0 chr4 123811514 123811696 -78516651 - L1 LINE L1 -2448 3698 3510 2960 65 0 5 chr4 123811787 123812174 -78516173 - L1PA7 LINE L1 -1 6153 5769 5811 29 0 0 chr4 123812176 123812859 -78515488 - L1PA3 LINE L1 0 6155 5473 22 0 0 0 chr4 123815549 123815571 -78512776 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 123816104 123816129 -78512218 + AT_rich Low_complexity Low_complexity 1 25 0 238 204 20 0 chr4 123816381 123816430 -78511917 - LTR33A LTR ERVL 0 523 474 225 65 0 0 chr4 123816476 123816507 -78511840 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr4 123816551 123816574 -78511773 + AT_rich Low_complexity Low_complexity 1 23 0 1972 241 41 47 chr4 123817368 123817923 -78510424 - MER72 LTR ERV1 -170 552 1 532 269 37 88 chr4 123817925 123818219 -78510128 + L1ME2 LINE L1 5877 6155 -9 855 242 6 0 chr4 123818311 123818493 -78509854 + MER72 LTR ERV1 540 722 0 577 221 55 18 chr4 123818494 123818657 -78509690 - L1ME1 LINE L1 -292 5874 5706 6693 96 29 3 chr4 123818906 123819894 -78508453 - HERVL-A2 LTR ERVL -287 5367 4354 * 13984 96 10 7 chr4 123819891 123821851 -78506496 - HERVL-A2 LTR ERVL -3687 1967 1 2751 123 12 67 chr4 123821851 123822330 -78506017 - MLT2A2 LTR ERVL 0 453 1 868 114 0 8 chr4 123822330 123822466 -78505881 - L1M1 LINE L1 -520 5646 5526 1106 211 129 11 chr4 123822731 123823011 -78505336 + MLT2B3 LTR ERVL 1 313 -241 2456 185 16 7 chr4 123823011 123823449 -78504898 - ERVL LTR ERVL -3266 2498 2057 5115 115 111 34 chr4 123823459 123824546 -78503801 - MER11A LTR ERVK 0 1266 1 5062 215 50 19 chr4 123824548 123825498 -78502849 - ERVL LTR ERVL -3714 2050 1059 1909 151 0 0 chr4 123825498 123825813 -78502534 - AluSx SINE Alu 0 315 1 5062 215 50 19 chr4 123825813 123825955 -78502392 - ERVL LTR ERVL -4705 1059 923 21 57 0 0 chr4 123825957 123825992 -78502355 + AT_rich Low_complexity Low_complexity 1 35 0 877 213 9 69 chr4 123826080 123826296 -78502051 + MER20 DNA MER1_type 1 203 -16 23 101 0 0 chr4 123826344 123826423 -78501924 + AT_rich Low_complexity Low_complexity 1 79 0 9307 78 2 0 chr4 123826951 123828184 -78500163 + L1P LINE L1 26 1260 -4886 249 83 0 0 chr4 123829806 123829842 -78498505 + (CA)n Simple_repeat Simple_repeat 2 37 0 2368 83 0 0 chr4 123830513 123830814 -78497533 + AluY SINE Alu 1 301 -10 23 33 0 0 chr4 123831372 123831402 -78496945 + AT_rich Low_complexity Low_complexity 1 30 0 1948 174 18 85 chr4 123832981 123833417 -78494930 + MLT2D LTR ERVL 1 407 -7 501 291 35 26 chr4 123833838 123834065 -78494282 - L1MC4 LINE L1 -184 7858 7630 324 372 53 29 chr4 123834272 123834613 -78493734 - L2 LINE L2 -1901 1413 1065 251 360 86 60 chr4 123835115 123835451 -78492896 - L2 LINE L2 -2739 575 231 22 35 0 0 chr4 123835909 123835938 -78492409 + AT_rich Low_complexity Low_complexity 1 29 0 2104 79 9 60 chr4 123836160 123836477 -78491870 - AluY SINE Alu -10 301 1 411 205 13 103 chr4 123836517 123836673 -78491674 + L1M4 LINE L1 4914 5055 -1091 * 1459 245 76 28 chr4 123836672 123836868 -78491479 + L1MC/D LINE L1 4971 5156 -1203 2108 120 10 0 chr4 123836868 123837168 -78491179 + AluSx SINE Alu 1 303 -9 1459 245 76 28 chr4 123837168 123837662 -78490685 + L1MC/D LINE L1 5156 5698 -661 211 337 64 37 chr4 123838334 123838521 -78489826 + L2 LINE L2 192 383 -2931 21 71 0 0 chr4 123838715 123838757 -78489590 + AT_rich Low_complexity Low_complexity 1 42 0 23 54 0 0 chr4 123839815 123839852 -78488495 + AT_rich Low_complexity Low_complexity 1 37 0 27 49 0 0 chr4 123841656 123841697 -78486650 + AT_rich Low_complexity Low_complexity 1 41 0 1026 175 0 0 chr4 123841884 123842050 -78486297 + AluSx SINE Alu 14 179 -133 521 160 0 21 chr4 123842053 123842147 -78486200 + AluY SINE Alu 216 307 -4 227 328 66 0 chr4 123842844 123842966 -78485381 + L1ME LINE L1 4033 4162 -1984 728 306 36 16 chr4 123843100 123843332 -78485015 + L1ME LINE L1 5452 5693 -477 2157 137 108 11 chr4 123843332 123843784 -78484563 - LTR54B LTR ERV1 -2 496 1 728 306 36 16 chr4 123843784 123843858 -78484489 + L1ME LINE L1 5693 5764 -406 880 250 75 11 chr4 123844003 123844351 -78483996 + LTR37A LTR ERV1 39 408 -18 288 307 0 44 chr4 123844460 123844574 -78483773 + Charlie7 DNA MER1_type 1274 1382 -1230 274 283 87 40 chr4 123844623 123844796 -78483551 + Charlie7 DNA MER1_type 1576 1756 -856 587 291 89 21 chr4 123845240 123845666 -78482681 + Charlie7 DNA MER1_type 1882 2336 -276 1242 211 69 0 chr4 123845744 123846004 -78482343 + AluJb SINE Alu 19 296 -16 1978 149 0 0 chr4 123846120 123846421 -78481926 + AluSx SINE Alu 3 303 -9 2419 194 62 53 chr4 123846607 123847319 -78481028 + L1 LINE L1 2993 3710 -2436 22 35 0 0 chr4 123848445 123848474 -78479873 + AT_rich Low_complexity Low_complexity 1 29 0 27 62 0 0 chr4 123849167 123849215 -78479132 + AT_rich Low_complexity Low_complexity 1 48 0 246 160 0 0 chr4 123849577 123849627 -78478720 + GA-rich Low_complexity Low_complexity 3 52 0 22 0 0 0 chr4 123849658 123849680 -78478667 + AT_rich Low_complexity Low_complexity 1 22 0 302 266 0 0 chr4 123849700 123849764 -78478583 - MER91A DNA MER1_type -36 160 97 27 49 0 0 chr4 123852994 123853035 -78475312 + AT_rich Low_complexity Low_complexity 1 41 0 21 71 0 0 chr4 123856064 123856106 -78472241 + AT_rich Low_complexity Low_complexity 1 42 0 27 0 0 0 chr4 123857080 123857107 -78471240 + AT_rich Low_complexity Low_complexity 1 27 0 2078 131 76 15 chr4 123857819 123858162 -78470185 + THE1B LTR MaLR 1 364 0 10653 121 10 0 chr4 123858162 123859726 -78468621 + THE1B-int LTR MaLR 1 1580 0 1859 162 85 15 chr4 123859726 123860066 -78468281 + THE1B LTR MaLR 1 364 0 2071 132 3 3 chr4 123860131 123860434 -78467913 - AluSc SINE Alu -6 303 1 1051 166 5 0 chr4 123862379 123862572 -78465775 + L1MA3 LINE L1 6112 6305 0 191 339 0 0 chr4 123863112 123863174 -78465173 + L2 LINE L2 2480 2541 -773 878 302 48 29 chr4 123863196 123863610 -78464737 + L1MCb LINE L1 3 424 -5621 374 277 22 15 chr4 123863803 123863940 -78464407 + L1MCb LINE L1 569 706 -5339 386 356 116 0 chr4 123863943 123864207 -78464140 - L2 LINE L2 -253 3060 2773 194 395 12 0 chr4 123864211 123864297 -78464050 - L2 LINE L2 -664 2650 2564 2905 150 2 48 chr4 123865765 123866195 -78462152 - LOR1a LTR ERV1 0 497 94 2224 108 3 0 chr4 123866195 123866492 -78461855 + AluY SINE Alu 1 298 -13 2905 150 2 48 chr4 123866492 123866582 -78461765 - LOR1a LTR ERV1 -403 94 1 1863 161 73 15 chr4 123867207 123867549 -78460798 - THE1B LTR MaLR 0 364 3 10738 104 6 40 chr4 123867551 123869184 -78459163 - THE1B-int LTR MaLR 0 1580 3 1919 139 71 40 chr4 123869186 123869539 -78458808 - THE1B LTR MaLR 0 364 1 1301 229 165 9 chr4 123869580 123870017 -78458330 + MLT1D LTR MaLR 1 505 0 22 35 0 0 chr4 123871238 123871267 -78457080 + AT_rich Low_complexity Low_complexity 1 29 0 1637 273 35 43 chr4 123872043 123872785 -78455562 + L1ME1 LINE L1 5450 6182 -2 304 356 0 0 chr4 123872801 123872902 -78455445 - HAL1 LINE L1 -935 1572 1472 238 302 0 0 chr4 123873288 123873351 -78454996 - L1MEd LINE L1 -5459 660 598 22 0 0 0 chr4 123874248 123874270 -78454077 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr4 123875072 123875109 -78453238 + AT_rich Low_complexity Low_complexity 1 37 0 1005 278 57 9 chr4 123875197 123875546 -78452801 + L1ME1 LINE L1 5797 6162 -4 636 254 0 0 chr4 123876913 123877051 -78451296 - FAM SINE Alu -42 143 6 389 141 0 0 chr4 123877853 123877917 -78450430 - L1P5 LINE L1 -379 5772 5709 1365 126 5 0 chr4 123877917 123878154 -78450193 + L1PB1 LINE L1 5927 6166 0 1370 187 45 4 chr4 123879599 123879867 -78448480 - AluJb SINE Alu -31 281 3 414 0 0 0 chr4 123879875 123879921 -78448426 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 311 18 9 0 chr4 123879921 123879966 -78448381 - AluJb SINE Alu -183 119 84 24 32 0 0 chr4 123881417 123881448 -78446899 + AT_rich Low_complexity Low_complexity 1 31 0 374 306 150 19 chr4 123881963 123882494 -78445853 - L1ME LINE L1 -359 5803 5198 246 268 27 9 chr4 123883046 123883158 -78445189 - L1ME LINE L1 -1617 4529 4416 186 341 49 12 chr4 123884304 123884386 -78443961 - MIR SINE MIR -169 93 9 182 167 0 24 chr4 123884393 123884435 -78443912 + (TA)n Simple_repeat Simple_repeat 2 42 0 1927 182 11 17 chr4 123884818 123885175 -78443172 - MLT1A1 LTR MaLR 0 365 11 1388 239 47 24 chr4 123885257 123885638 -78442709 - MLT1B LTR MaLR 0 390 1 1633 209 21 13 chr4 123885765 123886125 -78442222 + MLT1A1 LTR MaLR 1 456 -1 1037 222 31 42 chr4 123886312 123886422 -78441925 + AluJo SINE Alu 11 121 -191 2837 3 0 0 chr4 123886422 123886733 -78441614 - AluYa5 SINE Alu 0 311 1 1037 222 31 42 chr4 123886733 123886883 -78441464 + AluJo SINE Alu 121 268 -44 22 0 0 0 chr4 123886905 123886927 -78441420 + AT_rich Low_complexity Low_complexity 1 22 0 237 163 0 20 chr4 123888766 123888815 -78439532 + GA-rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr4 123890000 123890029 -78438318 + AT_rich Low_complexity Low_complexity 1 29 0 1767 100 29 0 chr4 123890112 123890353 -78437994 + AluSg SINE Alu 47 294 -16 351 303 188 45 chr4 123890468 123890930 -78437417 + L2 LINE L2 2212 2739 -575 208 230 40 0 chr4 123891401 123891475 -78436872 + (TA)n Simple_repeat Simple_repeat 2 78 0 250 111 74 19 chr4 123891475 123891529 -78436818 - MER95 LTR ERV -1 430 374 1611 190 49 37 chr4 123891543 123891948 -78436399 - MER95 LTR ERV -17 414 5 543 115 35 0 chr4 123891975 123892062 -78436285 - LTR48 LTR ERV1 -20 767 678 587 184 66 0 chr4 123892074 123892210 -78436137 + L1 LINE L1 5095 5239 -907 5226 189 46 31 chr4 123892261 123894607 -78433740 - L1MA7 LINE L1 -2 6289 3922 1436 191 17 7 chr4 123894720 123895013 -78433334 - MER47A DNA MER2_type -65 301 6 1742 140 23 37 chr4 123895042 123895342 -78433005 + AluSx SINE Alu 1 296 -16 1785 174 33 24 chr4 123895627 123895960 -78432387 - MER2 DNA MER2_type -9 336 1 380 260 0 0 chr4 123896720 123896820 -78431527 - L1MA10 LINE L1 -1 6333 6234 249 146 0 0 chr4 123897253 123897301 -78431046 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 23 0 0 0 chr4 123897501 123897524 -78430823 + AT_rich Low_complexity Low_complexity 1 23 0 650 322 49 10 chr4 123898003 123898208 -78430139 + MIR SINE MIR 20 232 -30 2961 165 14 10 chr4 123898471 123899462 -78428885 + L1PB1 LINE L1 4706 5700 -451 180 0 0 0 chr4 123899464 123899484 -78428863 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 309 51 0 0 chr4 123899483 123899522 -78428825 + (CA)n Simple_repeat Simple_repeat 2 40 0 2296 104 23 3 chr4 123899522 123899868 -78428479 + L1PB1 LINE L1 5794 6146 -5 1311 194 62 42 chr4 123901085 123901374 -78426973 - AluJo SINE Alu -17 295 1 2193 109 0 19 chr4 123901992 123902304 -78426043 + AluSg SINE Alu 1 306 -4 21 0 0 0 chr4 123903086 123903107 -78425240 + AT_rich Low_complexity Low_complexity 1 21 0 269 294 24 0 chr4 123904150 123904235 -78424112 - MIR SINE MIR -122 140 54 313 262 97 0 chr4 123904274 123904377 -78423970 + MIR SINE MIR 112 224 -38 338 175 0 0 chr4 123904763 123904826 -78423521 - L1MA10 LINE L1 -3 6331 6269 642 170 67 7 chr4 123904826 123904961 -78423386 + L1MB1 LINE L1 6022 6164 -25 2045 139 12 6 chr4 123905307 123905645 -78422702 + L1PA13 LINE L1 5818 6157 -6 1651 153 16 36 chr4 123905819 123906126 -78422221 + AluJb SINE Alu 1 301 -11 1170 273 96 5 chr4 123906861 123907257 -78421090 + L1ME2 LINE L1 5534 5965 -199 1910 168 21 72 chr4 123907330 123907706 -78420641 - LTR18A LTR ERVL 0 357 1 9672 175 23 7 chr4 123907707 123909335 -78419012 - HERVL18 LTR ERVL 0 6047 4394 5143 171 7 2 chr4 123909337 123910189 -78418158 - HERVL18 LTR ERVL -2468 3579 2724 1219 140 17 64 chr4 123910245 123910481 -78417866 - HERVL18 LTR ERVL -3704 2343 2119 1181 219 0 14 chr4 123910513 123910732 -78417615 - HERVL18 LTR ERVL -4433 1614 1399 * 1749 205 12 3 chr4 123910723 123911055 -78417292 - HERVL18 LTR ERVL -5079 968 634 1531 167 7 50 chr4 123911058 123911357 -78416990 - HERVL18 LTR ERVL -5761 286 1 429 212 10 30 chr4 123911363 123911462 -78416885 - LTR18B LTR ERVL 0 614 518 585 281 66 55 chr4 123912027 123912283 -78416064 - MER21B LTR ERV1 -226 637 379 334 333 0 0 chr4 123912574 123912667 -78415680 - MLT1J1 LTR MaLR -140 306 214 2065 95 7 14 chr4 123913646 123913931 -78414416 + AluSg SINE Alu 21 303 -7 22 0 0 0 chr4 123913981 123914003 -78414344 + AT_rich Low_complexity Low_complexity 1 22 0 1245 249 19 25 chr4 123914060 123914421 -78413926 + MER63B DNA MER1_type 2 360 -76 622 235 7 33 chr4 123914502 123914655 -78413692 + MLT1E LTR MaLR 1 149 -444 1028 327 58 0 chr4 123914678 123915072 -78413275 + MLT1E LTR MaLR 119 535 -58 2229 87 7 3 chr4 123915843 123916142 -78412205 + AluY SINE Alu 1 300 -11 18080 195 29 14 chr4 123916607 123922220 -78406127 - L1PA13 LINE L1 -16 6798 1081 4555 213 9 6 chr4 123922283 123923139 -78405208 - L1PA13 LINE L1 -5928 859 1 219 69 0 0 chr4 123923828 123923857 -78404490 + (T)n Simple_repeat Simple_repeat 1 29 0 1379 181 58 22 chr4 123924355 123924631 -78403716 - AluJb SINE Alu -24 288 3 1228 226 10 25 chr4 123924880 123925194 -78403153 + L1M4 LINE L1 3398 3706 -2440 302 109 0 0 chr4 123925219 123925265 -78403082 + L1M4 LINE L1 3685 3730 -2416 4848 172 41 47 chr4 123925269 123927028 -78401319 + L1MA6 LINE L1 4555 6295 -5 257 196 0 152 chr4 123927219 123927311 -78401036 - MIR SINE MIR -147 115 38 24 85 0 0 chr4 123927924 123927983 -78400364 + AT_rich Low_complexity Low_complexity 1 59 0 28 29 0 0 chr4 123928283 123928318 -78400029 + AT_rich Low_complexity Low_complexity 1 35 0 6054 211 22 2 chr4 123928445 123929911 -78398436 + L1P4 LINE L1 3985 5471 -695 2813 166 20 4 chr4 123930002 123930509 -78397838 - L1PA16 LINE L1 -5 6161 5647 2651 153 27 0 chr4 123930509 123930561 -78397786 - MLT2A2 LTR ERVL 0 453 404 201 74 0 0 chr4 123930561 123930588 -78397759 + (CA)n Simple_repeat Simple_repeat 2 28 0 2651 153 27 0 chr4 123930588 123930974 -78397373 - MLT2A2 LTR ERVL -49 404 3 1884 92 0 0 chr4 123930976 123931237 -78397110 - HERVL-A2 LTR ERVL 0 5654 5394 374 291 85 20 chr4 123931774 123932058 -78396289 - L1M4c LINE L1 -4862 1566 1258 2124 188 25 17 chr4 123932127 123932535 -78395812 + Tigger2a DNA MER2_type 17 427 -7 758 287 74 12 chr4 123932654 123932992 -78395355 + L1M4 LINE L1 3809 4167 -1979 360 205 24 36 chr4 123933156 123933239 -78395108 + Tigger6 DNA MER2_type 1 82 -1001 235 277 0 15 chr4 123933252 123933317 -78395030 + (TA)n Simple_repeat Simple_repeat 1 64 0 241 266 0 43 chr4 123933324 123933418 -78394929 - L1MC4 LINE L1 -1339 6703 6614 191 125 25 0 chr4 123933430 123933470 -78394877 + (TA)n Simple_repeat Simple_repeat 2 42 0 988 171 5 66 chr4 123933473 123933684 -78394663 + Tigger6 DNA MER2_type 161 358 -1239 414 204 0 0 chr4 123933695 123933783 -78394564 + Tigger6 DNA MER2_type 1305 1392 -205 10310 154 11 29 chr4 123933785 123935876 -78392471 - L1PA11 LINE L1 -528 5603 3550 2804 122 77 39 chr4 123935876 123936393 -78391954 + L1PA11 LINE L1 5629 6166 -8 316 234 31 0 chr4 123936638 123936702 -78391645 + MER2 DNA MER2_type 39 104 -241 601 247 115 41 chr4 123936745 123936988 -78391359 + MER2 DNA MER2_type 85 345 0 770 248 6 17 chr4 123937229 123937558 -78390789 + MLT1B LTR MaLR 1 390 0 1151 261 90 38 chr4 123937562 123938326 -78390021 + L1M4 LINE L1 4450 5253 -893 184 343 102 18 chr4 123938912 123939078 -78389269 + L2 LINE L2 1782 1961 -1353 260 218 0 13 chr4 123939598 123939676 -78388671 + CT-rich Low_complexity Low_complexity 4 80 0 1007 203 78 37 chr4 123939880 123940235 -78388112 - MSTC LTR MaLR 0 428 19 36 97 0 0 chr4 123941336 123941449 -78386898 + AT_rich Low_complexity Low_complexity 1 113 0 47 78 0 0 chr4 123941492 123941595 -78386752 + AT_rich Low_complexity Low_complexity 1 103 0 617 136 0 0 chr4 123942542 123942630 -78385717 + LTR59 LTR ERV1 1 88 -509 1088 145 136 25 chr4 123942874 123943220 -78385127 + LTR59 LTR ERV1 162 587 -10 7611 30 0 0 chr4 123943610 123944512 -78383835 - L1PA3 LINE L1 0 6155 5254 7825 208 21 11 chr4 123945945 123947580 -78380767 + MLT1B-int LTR MaLR 1 1651 0 1721 178 98 28 chr4 123947580 123947980 -78380367 + MSTA LTR MaLR 1 428 0 1963 122 4 0 chr4 123948951 123949230 -78379117 + AluSp SINE Alu 3 282 -31 423 0 0 0 chr4 123949233 123949280 -78379067 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 310 219 0 0 chr4 123949439 123949503 -78378844 + L1MC4 LINE L1 6640 6703 -1339 * 312 304 0 22 chr4 123949483 123949575 -78378772 - L1MC4 LINE L1 -1339 6703 6614 227 156 0 0 chr4 123949591 123949636 -78378711 - LTR66 LTR ERVL -171 439 395 293 211 58 0 chr4 123949636 123949740 -78378607 + (TA)n Simple_repeat Simple_repeat 1 110 0 764 257 71 51 chr4 123950478 123950981 -78377366 - MER39 LTR ERV1 0 649 1 280 362 39 29 chr4 123951025 123951232 -78377115 - MIR SINE MIR -26 236 28 7440 118 4 6 chr4 123952441 123953566 -78374781 - L1PA8 LINE L1 -1055 5091 3970 6823 70 2 1 chr4 123953566 123954646 -78373701 + L1PA8 LINE L1 5091 6171 -1 197 83 28 0 chr4 123955094 123955130 -78373217 + (TA)n Simple_repeat Simple_repeat 1 37 0 21 57 0 0 chr4 123956781 123956816 -78371531 + AT_rich Low_complexity Low_complexity 1 35 0 228 304 14 0 chr4 123956962 123957031 -78371316 - MIR3 SINE MIR -37 171 102 42201 39 29 3 chr4 123957795 123963346 -78365001 - L1P1 LINE L1 -449 5706 1 265 316 48 12 chr4 123963374 123963624 -78364723 - L1MEc LINE L1 -2698 3517 3259 318 67 0 0 chr4 123963634 123963679 -78364668 + (TTA)n Simple_repeat Simple_repeat 2 46 0 230 245 0 64 chr4 123963697 123963791 -78364556 - L1MEc LINE L1 -3085 3130 3043 294 278 123 28 chr4 123963830 123964219 -78364128 - L1MEc LINE L1 -4356 2040 1615 215 77 0 26 chr4 123964251 123964290 -78364057 + (TTTAA)n Simple_repeat Simple_repeat 3 40 0 559 213 9 0 chr4 123964290 123964398 -78363949 - FLAM_C SINE Alu -22 121 13 558 300 109 24 chr4 123964414 123965228 -78363119 - L1MEc LINE L1 -4800 1456 728 418 379 38 26 chr4 123965477 123965820 -78362527 - L1MEc LINE L1 -6008 388 42 198 118 0 0 chr4 123965833 123965867 -78362480 + (CA)n Simple_repeat Simple_repeat 2 35 0 263 284 114 72 chr4 123967275 123967511 -78360836 + MLT2F LTR ERVL 10 255 -408 434 285 84 74 chr4 123967568 123967877 -78360470 + MLT2F LTR ERVL 352 663 0 1613 197 0 14 chr4 123968139 123968429 -78359918 + AluJo SINE Alu 3 288 -24 23 68 0 0 chr4 123968467 123968511 -78359836 + AT_rich Low_complexity Low_complexity 1 44 0 422 208 122 11 chr4 123968516 123968633 -78359714 - MER57A LTR ERV1 -9 394 240 450 326 11 34 chr4 123968684 123968862 -78359485 - MER57B LTR ERV1 -212 222 49 253 293 24 12 chr4 123968829 123968911 -78359436 - MER93a LTR ERV1 -319 83 1 * 26 0 0 0 chr4 123969082 123969108 -78359239 + AT_rich Low_complexity Low_complexity 1 26 0 2097 129 3 0 chr4 123969368 123969678 -78358669 + AluSx SINE Alu 1 311 -1 26 50 0 0 chr4 123969858 123969898 -78358449 + AT_rich Low_complexity Low_complexity 1 40 0 195 317 8 81 chr4 123970859 123970982 -78357365 + MIR SINE MIR 122 235 -27 948 211 116 21 chr4 123971492 123972076 -78356271 + LTR48B LTR ERV1 1 644 0 1935 146 3 13 chr4 123972160 123972475 -78355872 + LTR8 LTR ERV1 1 312 -379 232 155 17 17 chr4 123972492 123972550 -78355797 + (CATATA)n Simple_repeat Simple_repeat 5 62 0 306 263 12 0 chr4 123972553 123972633 -78355714 + L1MC4 LINE L1 6612 6692 -1350 * 352 185 0 0 chr4 123972570 123972635 -78355712 - L1MC4 LINE L1 -1339 6703 6639 1807 132 132 26 chr4 123972635 123972977 -78355370 + LTR8 LTR ERV1 314 691 0 2490 125 0 0 chr4 123973414 123973782 -78354565 + MER41B LTR ERV1 3 370 -265 289 233 70 0 chr4 123974667 123974753 -78353594 + L1ME2 LINE L1 4339 4430 -1716 28 86 0 0 chr4 123974782 123974852 -78353495 + AT_rich Low_complexity Low_complexity 1 70 0 28 48 0 0 chr4 123974995 123975037 -78353310 + AT_rich Low_complexity Low_complexity 1 42 0 1345 247 116 20 chr4 123975508 123976227 -78352120 + L1ME2 LINE L1 4958 5745 -421 240 91 23 57 chr4 123976263 123976351 -78351996 + (TTATA)n Simple_repeat Simple_repeat 5 89 0 451 285 40 56 chr4 123976428 123976677 -78351670 + L1ME2 LINE L1 5894 6138 -26 250 241 139 15 chr4 123976715 123976852 -78351495 + L1MEc LINE L1 1875 2028 -4368 890 289 93 35 chr4 123976882 123977547 -78350800 + L1MEc LINE L1 3589 4292 -1923 2358 223 11 14 chr4 123977573 123978093 -78350254 - ERVL-B2 LTR ERVL -4583 1181 663 2407 259 60 20 chr4 123978118 123978805 -78349542 - ERVL-B2 LTR ERVL -5031 733 20 318 107 0 0 chr4 123978856 123978912 -78349435 + (CA)n Simple_repeat Simple_repeat 2 57 0 1457 233 70 29 chr4 123978915 123979371 -78348976 - MLT2B2 LTR ERVL -40 475 1 239 367 32 48 chr4 123979492 123979740 -78348607 + LTR16C LTR ERVL 74 317 -174 1854 224 69 57 chr4 123979929 123980528 -78347819 + LTR48B LTR ERV1 3 612 -32 2137 113 181 17 chr4 123980528 123980942 -78347405 - LTR19A LTR ERV1 0 486 5 1854 224 69 57 chr4 123980942 123980976 -78347371 + LTR48B LTR ERV1 612 644 0 1347 216 34 71 chr4 123981906 123982317 -78346030 - MSTD LTR MaLR 0 396 1 27 62 0 0 chr4 123982324 123982372 -78345975 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr4 123982475 123982497 -78345850 + AT_rich Low_complexity Low_complexity 1 22 0 359 304 75 19 chr4 123982575 123982736 -78345611 - L1ME2 LINE L1 -14 6150 5981 764 159 0 16 chr4 123982962 123983088 -78345259 - FLAM_C SINE Alu -17 126 3 24 32 0 0 chr4 123983090 123983121 -78345226 + AT_rich Low_complexity Low_complexity 1 31 0 470 331 23 49 chr4 123984167 123984430 -78343917 + MIR SINE MIR 7 262 0 231 186 0 0 chr4 123984432 123984475 -78343872 + (CAT)n Simple_repeat Simple_repeat 3 45 0 352 316 60 0 chr4 123984777 123984998 -78343349 - L1ME2 LINE L1 -301 5869 5632 3937 90 15 0 chr4 123985675 123986221 -78342126 - MER41A LTR ERV1 0 554 1 21 0 0 0 chr4 123988131 123988152 -78340195 + AT_rich Low_complexity Low_complexity 1 21 0 1902 172 44 35 chr4 123988430 123988979 -78339368 - MLT2A2 LTR ERVL 0 554 1 487 29 29 0 chr4 123989499 123989568 -78338779 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 40 49 0 0 chr4 123990639 123990700 -78337647 + AT_rich Low_complexity Low_complexity 1 61 0 244 298 103 10 chr4 123991796 123991950 -78336397 + MIR SINE MIR 23 190 -63 204 299 222 34 chr4 123992441 123992558 -78335789 + MIR SINE MIR 1 139 -123 980 216 23 14 chr4 123992621 123992839 -78335508 + L1MC1 LINE L1 6105 6324 -9 243 268 179 17 chr4 123992863 123993042 -78335305 + L1M4 LINE L1 3890 4097 -2049 1008 174 0 0 chr4 123993045 123993200 -78335147 - MLT1A1 LTR MaLR -4 361 207 2862 210 51 25 chr4 123993217 123993902 -78334445 - MLT1A1-int LTR MaLR -1031 704 2 918 216 10 10 chr4 123993903 123994097 -78334250 - MLT1A1 LTR MaLR 0 365 172 22 0 0 0 chr4 123994104 123994126 -78334221 + AT_rich Low_complexity Low_complexity 1 22 0 4463 136 35 14 chr4 124095165 124095932 -78232415 - L1M1 LINE L1 -4956 2609 1827 426 164 0 0 chr4 124096032 124096105 -78232242 - AluS SINE Alu -236 73 1 216 200 0 0 chr4 124096114 124096159 -78232188 + (TA)n Simple_repeat Simple_repeat 2 46 0 369 249 113 92 chr4 124096176 124096361 -78231986 + MIR SINE MIR 9 197 -65 25 31 0 0 chr4 124096396 124096428 -78231919 + AT_rich Low_complexity Low_complexity 1 32 0 210 71 0 0 chr4 124096948 124096976 -78231371 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 369 109 0 0 chr4 124097020 124097084 -78231263 + (T)n Simple_repeat Simple_repeat 1 64 0 22 0 0 0 chr4 124098361 124098383 -78229964 + AT_rich Low_complexity Low_complexity 1 22 0 284 351 68 5 chr4 124099547 124099738 -78228609 + L2 LINE L2 2870 3072 -241 24 32 0 0 chr4 124099941 124099972 -78228375 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr4 124100612 124100644 -78227703 + AT_rich Low_complexity Low_complexity 1 32 0 2743 83 19 71 chr4 124100836 124101303 -78227044 + MLT2A1 LTR ERVL 1 443 -1 700 380 108 23 chr4 124102007 124102166 -78226181 + L2 LINE L2 1064 1208 -2106 2019 118 4 0 chr4 124102166 124102445 -78225902 + AluSx SINE Alu 1 280 -32 401 0 20 0 chr4 124102448 124102497 -78225850 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 700 380 108 23 chr4 124102497 124103789 -78224558 + L2 LINE L2 1209 2644 -670 33 43 0 0 chr4 124103934 124103981 -78224366 + AT_rich Low_complexity Low_complexity 1 47 0 404 316 48 43 chr4 124104964 124105151 -78223196 + MIR SINE MIR 65 252 -10 24 67 0 0 chr4 124105237 124105282 -78223065 + AT_rich Low_complexity Low_complexity 1 45 0 27 29 0 0 chr4 124105636 124105670 -78222677 + AT_rich Low_complexity Low_complexity 1 34 0 275 150 17 0 chr4 124105814 124105874 -78222473 + (TA)n Simple_repeat Simple_repeat 2 62 0 1772 152 157 24 chr4 124106019 124106395 -78221952 + MSTA LTR MaLR 3 428 0 209 216 20 0 chr4 124106637 124106688 -78221659 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 293 300 0 30 chr4 124108962 124109062 -78219285 + L1M4 LINE L1 8 104 -6438 1009 274 28 45 chr4 124109237 124109594 -78218753 - MLT1A2 LTR MaLR -23 351 1 257 290 109 49 chr4 124111475 124111658 -78216689 - MIR SINE MIR -50 212 19 237 258 16 0 chr4 124112305 124112367 -78215980 + (TATG)n Simple_repeat Simple_repeat 2 64 0 456 300 93 0 chr4 124112687 124112837 -78215510 + L1ME LINE L1 5560 5723 -447 229 345 42 35 chr4 124112900 124113042 -78215305 - MLT1H LTR MaLR -250 299 157 27 0 0 0 chr4 124113224 124113251 -78215096 + AT_rich Low_complexity Low_complexity 1 27 0 21 71 0 0 chr4 124113405 124113447 -78214900 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr4 124113496 124113524 -78214823 + AT_rich Low_complexity Low_complexity 1 28 0 446 262 41 35 chr4 124113656 124113828 -78214519 - MLT2E LTR ERVL -45 583 411 1565 126 109 11 chr4 124113930 124114215 -78214132 - MER4C LTR ERV1 -8 457 145 613 382 36 38 chr4 124114407 124114577 -78213770 - L2 LINE L2 -1 3312 3143 2207 145 5 49 chr4 124114577 124114985 -78213362 - MLT1B LTR MaLR 0 390 1 613 382 36 38 chr4 124114985 124115262 -78213085 - L2 LINE L2 -170 3143 2866 2083 133 0 3 chr4 124117600 124117901 -78210446 - AluSx SINE Alu -12 300 1 30 0 0 0 chr4 124118224 124118254 -78210093 + AT_rich Low_complexity Low_complexity 1 30 0 349 337 0 36 chr4 124119160 124119326 -78209021 - L3 LINE CR1 -546 1031 872 1584 199 68 112 chr4 124119488 124120016 -78208331 + MLT1D LTR MaLR 1 505 0 23 0 0 0 chr4 124120142 124120165 -78208182 + AT_rich Low_complexity Low_complexity 1 23 0 2251 181 16 11 chr4 124120264 124120433 -78207914 + MER65A LTR ERV1 1 168 -277 387 0 0 0 chr4 124120433 124120476 -78207871 + (CA)n Simple_repeat Simple_repeat 2 44 0 2251 181 16 11 chr4 124120476 124120749 -78207598 + MER65A LTR ERV1 168 445 0 2368 241 66 43 chr4 124120758 124121562 -78206785 + MER65A-int LTR ERV1 11 942 -4046 387 0 0 0 chr4 124121903 124121946 -78206401 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 357 24 0 0 chr4 124122148 124122190 -78206157 + (CA)n Simple_repeat Simple_repeat 2 43 0 2680 221 43 51 chr4 124122439 124123305 -78205042 + MER65A-int LTR ERV1 1047 1905 -2966 2341 62 0 50 chr4 124123314 124123635 -78204712 + AluY SINE Alu 1 305 -6 682 208 13 58 chr4 124123647 124123801 -78204546 + FAM SINE Alu 2 148 -37 1372 209 33 0 chr4 124123825 124124127 -78204220 + MER65A-int LTR ERV1 1901 2212 -2659 296 217 0 17 chr4 124124127 124124187 -78204160 + MLT2C1 LTR ERVL 196 254 -143 1702 276 30 32 chr4 124124188 124124783 -78203564 + L1MCb LINE L1 385 978 -5444 2922 264 43 7 chr4 124124784 124125869 -78202478 + L1M4 LINE L1 2617 3740 -2406 587 237 5 68 chr4 124125925 124126132 -78202215 + L1M4 LINE L1 4152 4345 -1801 425 256 147 6 chr4 124126570 124126726 -78201621 + MIR SINE MIR 72 249 -13 23 0 0 0 chr4 124126776 124126799 -78201548 + AT_rich Low_complexity Low_complexity 1 23 0 289 301 163 20 chr4 124127125 124127278 -78201069 + MIR SINE MIR 64 238 -24 229 103 0 0 chr4 124127608 124127647 -78200700 + L1MA3 LINE L1 6267 6305 0 21 36 0 0 chr4 124128103 124128131 -78200216 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 124128205 124128228 -78200119 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr4 124129128 124129160 -78199187 + AT_rich Low_complexity Low_complexity 1 32 0 815 268 76 41 chr4 124129906 124130589 -78197758 + L1MCb LINE L1 1184 1887 -4972 1511 43 0 0 chr4 124130589 124130774 -78197573 + L1PA4 LINE L1 5969 6153 -2 815 268 76 41 chr4 124130774 124130861 -78197486 + L1MCb LINE L1 1887 1970 -4889 22 56 0 0 chr4 124131343 124131379 -78196968 + AT_rich Low_complexity Low_complexity 1 36 0 262 250 0 60 chr4 124131903 124131987 -78196360 + GA-rich Low_complexity Low_complexity 4 82 0 22 35 0 0 chr4 124132262 124132291 -78196056 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 124133353 124133376 -78194971 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr4 124133643 124133670 -78194677 + AT_rich Low_complexity Low_complexity 1 27 0 1019 173 17 25 chr4 124134371 124134608 -78193739 - L1MB1 LINE L1 0 6168 5934 309 343 79 39 chr4 124136290 124136570 -78191777 + ERVL LTR ERVL 3342 3632 -2132 444 284 112 24 chr4 124136744 124136994 -78191353 + ERVL LTR ERVL 860 1131 -4633 1012 165 29 120 chr4 124137034 124137119 -78191228 - MLT1A2 LTR MaLR -87 287 196 261 0 0 0 chr4 124137119 124137148 -78191199 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1012 165 29 120 chr4 124137148 124137378 -78190969 - MLT1A2 LTR MaLR -178 196 1 1479 335 53 14 chr4 124137421 124138134 -78190213 + ERVL LTR ERVL 1367 2107 -3657 1702 309 100 55 chr4 124138153 124138519 -78189828 + ERVL LTR ERVL 2318 2666 -3098 2018 143 54 14 chr4 124138519 124138869 -78189478 + THE1B LTR MaLR 1 364 0 9336 120 52 45 chr4 124138869 124140437 -78187910 + THE1B-int LTR MaLR 1 1580 0 2136 129 52 20 chr4 124140441 124140790 -78187557 + THE1B LTR MaLR 5 364 0 1702 309 100 55 chr4 124140790 124141733 -78186614 + ERVL LTR ERVL 2668 3693 -2071 230 415 85 22 chr4 124142488 124142804 -78185543 + L2 LINE L2 2550 2885 -429 1475 197 14 51 chr4 124142881 124143232 -78185115 + MER44D DNA MER2_type 2 609 0 261 98 0 0 chr4 124143245 124143286 -78185061 + (CA)n Simple_repeat Simple_repeat 1 41 0 309 51 0 0 chr4 124144096 124144135 -78184212 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 18947 177 15 18 chr4 124144140 124147107 -78181240 - L1PA11 LINE L1 -8 7604 4631 1844 155 39 33 chr4 124147107 124147469 -78180878 + THE1B LTR MaLR 1 364 0 18947 177 15 18 chr4 124147469 124150535 -78177812 - L1PA11 LINE L1 -2981 4631 803 563 167 8 8 chr4 124150536 124150656 -78177691 + L1MA7 LINE L1 6166 6285 -6 22 35 0 0 chr4 124150656 124150685 -78177662 + AT_rich Low_complexity Low_complexity 1 29 0 42 65 0 0 chr4 124152230 124152307 -78176040 + AT_rich Low_complexity Low_complexity 1 77 0 216 343 91 0 chr4 124152450 124152549 -78175798 + L3 LINE CR1 247 354 -1223 183 80 0 0 chr4 124152572 124152597 -78175750 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 1739 175 3 0 chr4 124153126 124153423 -78174924 - AluJb SINE Alu -14 298 1 6079 72 0 87 chr4 124153574 124154588 -78173759 - L1PA7 LINE L1 0 6154 5254 9839 95 10 1 chr4 124154593 124155999 -78172348 + L1P LINE L1 2890 4307 -1839 2384 89 0 0 chr4 124156133 124156436 -78171911 + AluSx SINE Alu 1 303 -9 579 29 0 0 chr4 124156450 124156519 -78171828 + (TG)n Simple_repeat Simple_repeat 2 70 0 327 278 12 65 chr4 124157561 124157730 -78170617 - MLT2E LTR ERVL 0 628 469 2273 174 16 23 chr4 124157750 124158186 -78170161 - Tigger2a DNA MER2_type -1 433 1 3936 258 20 29 chr4 124159195 124160752 -78167595 + L1PA13 LINE L1 1 1815 -4972 1031 238 30 3 chr4 124160752 124161051 -78167296 - L1PA13 LINE L1 -4666 2121 1815 * 6601 236 27 10 chr4 124161036 124162879 -78165468 + L1PA13 LINE L1 2305 4930 -1867 202 224 20 0 chr4 124163106 124163155 -78165192 + (TG)n Simple_repeat Simple_repeat 1 50 0 24 0 0 0 chr4 124163324 124163348 -78164999 + AT_rich Low_complexity Low_complexity 1 24 0 645 356 34 34 chr4 124163627 124164071 -78164276 - L2 LINE L2 -9 3304 2861 487 364 68 30 chr4 124165033 124165561 -78162786 + L2 LINE L2 2213 2760 -554 237 405 127 3 chr4 124165547 124165838 -78162509 + L2 LINE L2 2942 3268 -4 * 3330 150 2 9 chr4 124166259 124166786 -78161561 + MER1A DNA MER1_type 1 523 -4 2266 88 0 3 chr4 124167516 124167811 -78160536 - AluY SINE Alu -17 294 1 336 313 15 0 chr4 124169583 124169714 -78158633 + (TA)n Simple_repeat Simple_repeat 2 134 0 192 200 0 0 chr4 124170256 124170296 -78158051 + (CATA)n Simple_repeat Simple_repeat 3 42 0 2097 184 47 78 chr4 124170300 124170407 -78157940 + L1MC3 LINE L1 6789 6898 -887 198 0 0 0 chr4 124170407 124170429 -78157918 + (CA)n Simple_repeat Simple_repeat 2 23 0 2097 184 47 78 chr4 124170429 124170898 -78157449 + L1MC3 LINE L1 6898 7347 -438 25 0 0 0 chr4 124171527 124171552 -78156795 + AT_rich Low_complexity Low_complexity 1 25 0 1825 185 21 3 chr4 124171886 124172226 -78156121 - MER7A DNA MER2_type -1 345 2 222 287 0 11 chr4 124174516 124174603 -78153744 + A-rich Low_complexity Low_complexity 5 90 0 413 291 20 27 chr4 124174652 124174800 -78153547 - MIR SINE MIR -32 230 84 261 135 0 0 chr4 124175219 124175271 -78153076 + (CA)n Simple_repeat Simple_repeat 2 53 0 1497 187 11 18 chr4 124175426 124175710 -78152637 - AluJo SINE Alu -25 287 6 242 359 76 27 chr4 124176009 124176193 -78152154 - MIR SINE MIR -50 212 20 2471 181 50 31 chr4 124176439 124176993 -78151354 - MER34B LTR ERV1 0 565 1 1994 215 133 2 chr4 124177186 124177646 -78150701 + MLT2B1 LTR ERVL 1 520 0 30 0 0 0 chr4 124178218 124178248 -78150099 + AT_rich Low_complexity Low_complexity 1 30 0 1583 197 30 0 chr4 124178278 124178573 -78149774 - AluJb SINE Alu -8 304 1 1621 179 3 13 chr4 124178748 124179049 -78149298 + AluJo SINE Alu 13 310 -2 22 70 0 0 chr4 124179735 124179778 -78148569 + AT_rich Low_complexity Low_complexity 1 43 0 710 121 26 0 chr4 124179908 124180024 -78148323 - AluSx SINE Alu -16 296 178 1362 120 0 0 chr4 124180114 124180297 -78148050 - AluSx SINE Alu -129 183 1 1468 161 74 55 chr4 124180671 124181038 -78147309 - LTR1 LTR ERV1 -218 567 194 873 165 80 0 chr4 124181028 124181216 -78147131 - LTR1 LTR ERV1 -538 247 45 * 35 63 0 0 chr4 124181353 124181416 -78146931 + AT_rich Low_complexity Low_complexity 1 63 0 465 263 75 70 chr4 124181490 124181718 -78146629 + L1MEc LINE L1 37 265 -6131 23 97 0 0 chr4 124183929 124184001 -78144346 + AT_rich Low_complexity Low_complexity 1 72 0 2569 177 5 22 chr4 124184669 124185590 -78142757 - L1P4 LINE L1 -448 5718 4813 452 250 36 0 chr4 124185590 124185702 -78142645 - MER58A DNA MER1_type 0 154 39 917 272 219 28 chr4 124185785 124186612 -78141735 - L1M4 LINE L1 -1555 4591 3607 1626 164 29 18 chr4 124186640 124186945 -78141402 - AluJb SINE Alu 0 308 1 5967 164 16 17 chr4 124187009 124188636 -78139711 - L1MA3 LINE L1 0 6305 4681 915 276 50 12 chr4 124189162 124189484 -78138863 - LTR43 LTR ERV1 -137 465 132 268 250 0 0 chr4 124189620 124189688 -78138659 - LTR60 LTR ERV1 -518 68 1 305 295 74 0 chr4 124189736 124189858 -78138489 + MLT1J1 LTR MaLR 3 133 -313 230 290 30 20 chr4 124190018 124190118 -78138229 + MLT1J1 LTR MaLR 346 446 0 854 336 82 32 chr4 124191190 124191693 -78136654 + MLT2E LTR ERVL 101 628 0 223 273 0 0 chr4 124191988 124192043 -78136304 + T-rich Low_complexity Low_complexity 5 59 0 2150 112 7 0 chr4 124192116 124192421 -78135926 + AluSp SINE Alu 1 307 -6 2520 50 0 0 chr4 124192531 124192830 -78135517 + AluY SINE Alu 1 299 -12 37 39 0 0 chr4 124193485 124193536 -78134811 + AT_rich Low_complexity Low_complexity 1 51 0 236 288 89 82 chr4 124194477 124194769 -78133578 + L2 LINE L2 1792 2085 -1229 469 279 159 46 chr4 124194908 124195234 -78133113 - LTR33A LTR ERVL -149 374 12 632 342 29 0 chr4 124195838 124196078 -78132269 + MIR SINE MIR 15 261 -1 1501 222 86 9 chr4 124197103 124197536 -78130811 + MLT1C LTR MaLR 2 467 0 347 41 20 0 chr4 124197570 124197619 -78130728 + (TC)n Simple_repeat Simple_repeat 1 50 0 180 0 0 0 chr4 124197801 124197821 -78130526 + (A)n Simple_repeat Simple_repeat 1 20 0 23 78 0 0 chr4 124198081 124198132 -78130215 + AT_rich Low_complexity Low_complexity 1 51 0 707 177 0 0 chr4 124198812 124198936 -78129411 + FLAM_A SINE Alu 18 176 0 211 143 0 0 chr4 124198936 124198971 -78129376 + (GAAAA)n Simple_repeat Simple_repeat 1 180 0 1007 150 6 12 chr4 124198976 124199143 -78129204 + FRAM SINE Alu 1 158 -18 2447 4 0 0 chr4 124199146 124199414 -78128933 + AluY SINE Alu 44 311 0 22 0 0 0 chr4 124199675 124199697 -78128650 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr4 124199733 124199776 -78128571 + AT_rich Low_complexity Low_complexity 1 43 0 180 0 0 0 chr4 124200314 124200334 -78128013 + (TG)n Simple_repeat Simple_repeat 2 21 0 247 371 106 34 chr4 124200714 124201102 -78127245 + L2 LINE L2 2292 2707 -607 655 71 10 10 chr4 124201326 124201425 -78126922 + (TTTC)n Simple_repeat Simple_repeat 4 102 0 1130 241 100 16 chr4 124201531 124201851 -78126496 + MLT1C LTR MaLR 1 347 -120 719 234 158 64 chr4 124202117 124202618 -78125729 + L1ME3A LINE L1 5593 6140 -30 22 0 0 0 chr4 124203225 124203247 -78125100 + AT_rich Low_complexity Low_complexity 1 22 0 24 77 0 0 chr4 124203306 124203358 -78124989 + AT_rich Low_complexity Low_complexity 1 52 0 264 267 0 17 chr4 124204277 124204337 -78124010 + polypyrimidine Low_complexity Low_complexity 4 62 0 269 294 59 0 chr4 124207124 124207226 -78121121 + ERVL LTR ERVL 5218 5325 -439 1940 151 3 7 chr4 124207284 124207575 -78120772 - AluSx SINE Alu -22 290 1 436 279 115 33 chr4 124208246 124208429 -78119918 + LTR67 LTR ERVL 360 557 0 28 0 0 0 chr4 124208865 124208893 -78119454 + AT_rich Low_complexity Low_complexity 1 28 0 293 315 56 51 chr4 124209732 124209910 -78118437 + L2 LINE L2 2332 2510 -804 206 365 41 82 chr4 124210292 124210585 -78117762 + L2 LINE L2 2996 3276 -37 3388 232 68 77 chr4 124212115 124213176 -78115171 - L1MB8 LINE L1 -6 6172 5103 2091 131 50 11 chr4 124213176 124213535 -78114812 + THE1C LTR MaLR 3 375 0 3388 232 68 77 chr4 124213535 124214240 -78114107 - L1MB8 LINE L1 -1075 5103 4442 1807 132 40 0 chr4 124214240 124214513 -78113834 - AluSx SINE Alu -26 286 3 3388 232 68 77 chr4 124214513 124215054 -78113293 - L1MB8 LINE L1 -1736 4442 3898 1888 132 10 13 chr4 124215248 124215558 -78112789 - AluSg SINE Alu -1 309 1 248 250 13 13 chr4 124216542 124216618 -78111729 + (TATATG)n Simple_repeat Simple_repeat 3 78 0 2206 108 3 0 chr4 124216944 124217240 -78111107 + AluSp SINE Alu 1 297 -16 251 238 38 29 chr4 124217814 124217919 -78110428 + (CATATA)n Simple_repeat Simple_repeat 2 107 0 1829 202 43 53 chr4 124218331 124218677 -78109670 + L1M LINE L1 4825 5157 -1005 210 37 0 0 chr4 124218677 124218704 -78109643 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 1829 202 43 53 chr4 124218704 124218925 -78109422 + L1M LINE L1 5157 5379 -783 1542 199 7 0 chr4 124218971 124219257 -78109090 - AluJb SINE Alu -19 293 6 5982 198 100 48 chr4 124219257 124220827 -78107520 - MER52A LTR ERV1 -104 1651 1 349 216 54 0 chr4 124220827 124220889 -78107458 - MSTC LTR MaLR -361 67 2 264 100 0 0 chr4 124221169 124221209 -78107138 + (CA)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr4 124221290 124221313 -78107034 + AT_rich Low_complexity Low_complexity 1 23 0 2477 220 53 17 chr4 124222313 124222977 -78105370 + MER76 LTR ERV 1 688 0 21 0 0 0 chr4 124223597 124223618 -78104729 + AT_rich Low_complexity Low_complexity 1 21 0 312 320 47 6 chr4 124223886 124224058 -78104289 + L1ME LINE L1 7 185 -5885 980 244 197 23 chr4 124224065 124224455 -78103892 + MLT1C LTR MaLR 10 467 0 1842 45 12 8 chr4 124225107 124225350 -78102997 + AluY SINE Alu 60 303 -8 829 263 111 59 chr4 124225351 124225608 -78102739 - L1ME2 LINE L1 -141 6023 5781 1856 109 0 0 chr4 124225608 124225855 -78102492 + AluSc SINE Alu 38 284 -25 829 263 111 59 chr4 124225855 124226734 -78101613 - L1ME2 LINE L1 -383 5781 4826 332 223 64 43 chr4 124226739 124226780 -78101567 - MER58B DNA MER1_type -2079 341 302 330 26 0 0 chr4 124226780 124226819 -78101528 + (TG)n Simple_repeat Simple_repeat 2 40 0 332 223 64 43 chr4 124226819 124226871 -78101476 - MER58B DNA MER1_type -2118 302 246 1383 133 12 21 chr4 124226886 124227127 -78101220 - L1PA16 LINE L1 -9 6157 5919 1289 162 59 69 chr4 124227279 124227747 -78100600 - AluJb SINE Alu 0 465 1 461 306 116 55 chr4 124227838 124228253 -78100094 + HAL1b LINE L1 115 554 -794 26 64 0 0 chr4 124228941 124228988 -78099359 + AT_rich Low_complexity Low_complexity 1 47 0 26 30 0 0 chr4 124229082 124229115 -78099232 + AT_rich Low_complexity Low_complexity 1 33 0 533 332 44 31 chr4 124229271 124229497 -78098850 - L2 LINE L2 -221 3092 2864 220 258 0 30 chr4 124229514 124229580 -78098767 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 862 20 0 0 chr4 124229837 124229939 -78098408 + L1PA2 LINE L1 6054 6155 0 1405 363 108 26 chr4 124229939 124231395 -78096952 - L2 LINE L2 -799 2515 940 886 117 0 0 chr4 124232070 124232198 -78096149 - MER50-int LTR ERV1 -238 6967 6840 1489 153 11 11 chr4 124232201 124232463 -78095884 - MER50-int LTR ERV1 -1501 4445 4184 7609 208 44 28 chr4 124232465 124234189 -78094158 - MER50-int LTR ERV1 -2667 4538 2788 3367 172 46 5 chr4 124234185 124235064 -78093283 - MER50-int LTR ERV1 -5355 1850 821 * 2014 146 36 30 chr4 124235064 124235426 -78092921 - THE1B LTR MaLR 0 364 1 1258 85 341 5 chr4 124235426 124235649 -78092698 - THE1B-int LTR MaLR 0 1580 1283 * 6593 117 97 2 chr4 124235642 124236660 -78091687 - THE1B-int LTR MaLR -465 1115 1 2024 156 36 25 chr4 124236660 124237020 -78091327 - THE1B LTR MaLR 0 364 1 4526 162 5 26 chr4 124237020 124237830 -78090517 - MER50-int LTR ERV1 -6380 825 33 3652 161 64 12 chr4 124237830 124238518 -78089829 - MER50 LTR ERV1 -10 724 1 824 273 86 13 chr4 124238519 124238997 -78089350 - MLT2F LTR ERVL -134 529 1 23 33 0 0 chr4 124239626 124239656 -78088691 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 124239695 124239718 -78088629 + AT_rich Low_complexity Low_complexity 1 23 0 2729 246 70 42 chr4 124240165 124241161 -78087186 + Charlie1a DNA MER1_type 2 1025 -430 381 223 109 18 chr4 124241190 124241419 -78086928 + Charlie1a DNA MER1_type 1202 1451 -4 270 368 17 8 chr4 124241500 124241617 -78086730 - L2 LINE L2 0 3313 3196 1545 215 10 3 chr4 124241763 124242070 -78086277 + AluJo SINE Alu 1 309 -3 439 285 22 22 chr4 124243711 124243848 -78084499 + L2 LINE L2 2925 3061 -252 681 347 122 0 chr4 124243866 124244177 -78084170 - L3 LINE CR1 -296 1281 933 27 0 0 0 chr4 124244299 124244326 -78084021 + AT_rich Low_complexity Low_complexity 1 27 0 694 316 57 42 chr4 124245218 124245481 -78082866 - LTR40a LTR ERVL -105 414 91 245 321 54 18 chr4 124245546 124245658 -78082689 - L2 LINE L2 -272 3041 2926 203 77 0 26 chr4 124245662 124245701 -78082646 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 288 198 250 43 chr4 124245805 124245921 -78082426 - MER5A DNA MER1_type -6 183 44 231 324 49 69 chr4 124246065 124246312 -78082035 - L2 LINE L2 -817 2497 2256 893 334 123 42 chr4 124246474 124247322 -78081025 - L2 LINE L2 -1411 1903 988 2771 243 69 46 chr4 124247614 124248682 -78079665 + Zaphod DNA AcHobo 2 1094 -2937 1556 206 116 3 chr4 124248777 124249131 -78079216 - MSTD LTR MaLR 0 396 3 1911 226 8 89 chr4 124249504 124250018 -78078329 - MER70A LTR ERVL 0 472 1 2235 80 3 7 chr4 124250041 124250323 -78078024 + AluSq SINE Alu 1 308 -5 262 0 0 0 chr4 124250323 124250352 -78077995 + (TAAAA)n Simple_repeat Simple_repeat 1 150 0 221 367 92 0 chr4 124251570 124251679 -78076668 + L2 LINE L2 2936 3054 -218 210 167 0 0 chr4 124252573 124252609 -78075738 + T-rich Low_complexity Low_complexity 4 39 0 2721 69 3 0 chr4 124252647 124253007 -78075340 + L1PA7 LINE L1 5794 6154 0 22 0 0 0 chr4 124253393 124253415 -78074932 + AT_rich Low_complexity Low_complexity 1 22 0 214 360 23 23 chr4 124253432 124253518 -78074829 + L2 LINE L2 3139 3224 -48 4696 33 7 0 chr4 124253656 124254228 -78074119 - L1PA4 LINE L1 -1355 4791 4216 7598 24 0 8 chr4 124254228 124255602 -78072745 + L1PA4 LINE L1 4786 6152 -3 604 35 23 0 chr4 124256169 124256256 -78072091 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 728 192 23 0 chr4 124256556 124256686 -78071661 - AluJb SINE Alu -179 133 1 212 214 14 14 chr4 124256878 124256948 -78071399 + T-rich Low_complexity Low_complexity 2 71 0 364 340 27 14 chr4 124257585 124257732 -78070615 - L2 LINE L2 -7 3306 3158 373 167 0 24 chr4 124357848 124357932 -77970415 + L1MA7 LINE L1 6181 6262 -29 185 0 40 0 chr4 124357935 124357960 -77970387 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 2215 93 0 0 chr4 124357960 124358239 -77970108 - AluY SINE Alu -32 279 1 22 56 0 0 chr4 124358593 124358629 -77969718 + AT_rich Low_complexity Low_complexity 1 36 0 2196 116 3 7 chr4 124358635 124358938 -77969409 - AluSx SINE Alu -10 302 1 13654 174 28 50 chr4 124359060 124360049 -77968298 + L1PA12 LINE L1 2750 3759 -3112 1970 118 3 7 chr4 124360049 124360336 -77968011 - AluSg SINE Alu -8 302 17 566 112 20 10 chr4 124360336 124360434 -77967913 + AluSg/x SINE Alu 214 312 0 13654 174 28 50 chr4 124360434 124360558 -77967789 + L1PA12 LINE L1 3758 3883 -2988 396 0 0 0 chr4 124360558 124360602 -77967745 + (CA)n Simple_repeat Simple_repeat 2 45 0 13654 174 28 50 chr4 124360602 124361126 -77967221 + L1PA12 LINE L1 3883 4417 -2454 378 0 0 0 chr4 124361126 124361168 -77967179 + (CA)n Simple_repeat Simple_repeat 2 43 0 13654 174 28 50 chr4 124361168 124362664 -77965683 + L1PA12 LINE L1 4417 5877 -994 261 0 0 0 chr4 124362664 124362693 -77965654 + (TCTA)n Simple_repeat Simple_repeat 3 31 0 13654 174 28 50 chr4 124362693 124363511 -77964836 + L1PA12 LINE L1 5877 6711 -160 2640 152 58 7 chr4 124363511 124364052 -77964295 + L1MA2 LINE L1 5730 6304 0 22 35 0 0 chr4 124364052 124364081 -77964266 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr4 124365422 124365459 -77962888 + AT_rich Low_complexity Low_complexity 1 37 0 209 204 23 0 chr4 124366005 124366049 -77962298 + CT-rich Low_complexity Low_complexity 1 45 0 219 141 65 0 chr4 124366052 124366144 -77962203 + (TA)n Simple_repeat Simple_repeat 2 99 0 35 54 0 0 chr4 124366313 124366369 -77961978 + AT_rich Low_complexity Low_complexity 1 56 0 258 248 55 0 chr4 124366414 124366492 -77961855 + L1MC5 LINE L1 6640 6757 -1238 23 33 0 0 chr4 124366716 124366746 -77961601 + AT_rich Low_complexity Low_complexity 1 30 0 31 68 0 0 chr4 124367123 124367182 -77961165 + AT_rich Low_complexity Low_complexity 1 59 0 24 0 0 0 chr4 124367248 124367272 -77961075 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 124367688 124367710 -77960637 + AT_rich Low_complexity Low_complexity 1 22 0 250 333 11 0 chr4 124368067 124368154 -77960193 + MLT1J2 LTR MaLR 349 436 -14 213 65 0 0 chr4 124368444 124368475 -77959872 + (TG)n Simple_repeat Simple_repeat 2 32 0 1290 217 132 33 chr4 124368862 124369286 -77959061 - MER31B LTR ERV1 0 466 1 23 0 0 0 chr4 124369977 124370000 -77958347 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr4 124371116 124371154 -77957193 + AT_rich Low_complexity Low_complexity 1 38 0 188 65 0 32 chr4 124371442 124371473 -77956874 + (CATAT)n Simple_repeat Simple_repeat 3 32 0 387 254 118 0 chr4 124371583 124371693 -77956654 - MIR SINE MIR -59 203 81 180 111 0 0 chr4 124371838 124371865 -77956482 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 416 215 14 8 chr4 124371885 124372000 -77956347 + L1MA8 LINE L1 6010 6131 -169 352 309 151 24 chr4 124372190 124372562 -77955785 + L1ME LINE L1 5383 5801 -365 2401 151 147 0 chr4 124372651 124373100 -77955247 - L1P3 LINE L1 -5682 779 265 6757 128 4 5 chr4 124373109 124374182 -77954165 + L1P LINE L1 1319 2390 -3756 180 0 0 0 chr4 124375791 124375811 -77952536 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 1302 269 15 3 chr4 124376343 124376733 -77951614 + L1MC/D LINE L1 4862 5256 -890 931 225 0 11 chr4 124376739 124376926 -77951421 + MLT1A1 LTR MaLR 9 193 -172 319 274 68 8 chr4 124376933 124377050 -77951297 + L1MC/D LINE L1 5463 5586 -656 659 151 0 0 chr4 124379088 124379194 -77949153 + U6 snRNA snRNA 1 106 -1 291 200 0 0 chr4 124379194 124379244 -77949103 + L1P LINE L1 4545 4594 -1552 362 322 91 41 chr4 124379353 124379695 -77948652 - L1M4 LINE L1 -3141 3005 2647 491 290 155 5 chr4 124379732 124379924 -77948423 + LTR16B LTR ERVL 3 223 -241 847 267 74 36 chr4 124379924 124380314 -77948033 - MLT1D LTR MaLR 0 505 101 286 333 75 11 chr4 124380399 124380573 -77947774 + LTR16B LTR ERVL 220 404 -60 417 344 31 24 chr4 124380748 124381042 -77947305 + ERVL LTR ERVL 4267 4562 -1202 231 264 38 0 chr4 124381051 124381104 -77947243 + L2 LINE L2 3218 3272 0 248 361 31 15 chr4 124381227 124381357 -77946990 - MIR SINE MIR -116 146 15 387 21 0 0 chr4 124381976 124382023 -77946324 - MADE1 DNA Mariner 0 80 34 232 107 39 48 chr4 124382024 124382127 -77946220 + (TAAA)n Simple_repeat Simple_repeat 3 104 0 282 277 10 0 chr4 124382192 124382293 -77946054 + (TA)n Simple_repeat Simple_repeat 1 102 0 28 86 0 0 chr4 124382376 124382446 -77945901 + AT_rich Low_complexity Low_complexity 1 70 0 315 0 0 0 chr4 124383735 124383770 -77944577 + (CA)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr4 124384051 124384073 -77944274 + AT_rich Low_complexity Low_complexity 1 22 0 338 318 24 8 chr4 124384270 124384396 -77943951 - Charlie2 DNA MER1_type -2654 128 1 21 0 0 0 chr4 124385144 124385165 -77943182 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 124385353 124385378 -77942969 + AT_rich Low_complexity Low_complexity 1 25 0 202 242 0 16 chr4 124385566 124385628 -77942719 + T-rich Low_complexity Low_complexity 2 62 0 5232 191 13 5 chr4 124385885 124387475 -77940872 - L1MA8 LINE L1 -10 7241 5635 2082 148 23 0 chr4 124387530 124387881 -77940466 + L1PA16 LINE L1 5803 6161 -5 648 185 35 104 chr4 124387889 124388149 -77940198 - L1MA8 LINE L1 -4217 2889 2648 2222 313 40 13 chr4 124388164 124388208 -77940139 - L1MA8 LINE L1 -5226 1880 1839 7121 48 4 0 chr4 124388208 124389244 -77939103 - L1PA5 LINE L1 0 6154 5122 2222 313 40 13 chr4 124389244 124390381 -77937966 - L1MA8 LINE L1 -5267 1839 7 675 320 159 48 chr4 124390428 124391271 -77937076 + L2 LINE L2 1727 2475 -838 3064 107 9 0 chr4 124391271 124391729 -77936618 - L1PA13 LINE L1 0 6163 5702 675 320 159 48 chr4 124391729 124392287 -77936060 + L2 LINE L2 2475 3313 0 39 50 0 0 chr4 124392470 124392530 -77935817 + AT_rich Low_complexity Low_complexity 1 60 0 368 24 0 0 chr4 124392841 124392883 -77935464 + (A)n Simple_repeat Simple_repeat 1 42 0 193 333 12 0 chr4 124393020 124393101 -77935246 + MIR3 SINE MIR 126 207 -1 23 33 0 0 chr4 124393393 124393423 -77934924 + AT_rich Low_complexity Low_complexity 1 30 0 29 0 0 0 chr4 124393479 124393508 -77934839 + AT_rich Low_complexity Low_complexity 1 29 0 4635 207 68 24 chr4 124393512 124394837 -77933510 - L1M2 LINE L1 -712 5585 4214 235 220 127 25 chr4 124395417 124395535 -77932812 - MIR SINE MIR -7 255 126 1359 221 101 58 chr4 124398757 124399191 -77929156 - MLT2B1 LTR ERVL -67 453 1 846 204 0 12 chr4 124400837 124400999 -77927348 - FRAM SINE Alu -15 161 2 23 33 0 0 chr4 124401372 124401402 -77926945 + AT_rich Low_complexity Low_complexity 1 30 0 225 132 0 0 chr4 124401831 124401869 -77926478 + (CA)n Simple_repeat Simple_repeat 2 39 0 219 333 0 0 chr4 124402156 124402228 -77926119 + L2 LINE L2 1871 1942 -1372 29 47 0 0 chr4 124403385 124403428 -77924919 + AT_rich Low_complexity Low_complexity 1 43 0 691 221 125 9 chr4 124404691 124404914 -77923433 - L1MB7 LINE L1 -8 6166 5928 484 150 34 43 chr4 124405359 124405473 -77922874 + MER61E LTR ERV1 1 118 -482 264 131 180 0 chr4 124405619 124405680 -77922667 + MER51A LTR ERV1 209 280 -354 * 1219 191 78 20 chr4 124405651 124405997 -77922350 + LTR25 LTR ERV1 415 780 -14 486 294 34 19 chr4 124406554 124406819 -77921528 + LTR37B LTR ERV1 200 468 0 243 0 0 0 chr4 124407256 124407283 -77921064 + (TG)n Simple_repeat Simple_repeat 2 28 0 700 47 0 0 chr4 124407591 124407677 -77920670 - AluY SINE Alu -15 296 211 416 51 17 0 chr4 124407987 124408046 -77920301 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 287 343 29 12 chr4 124408392 124408564 -77919783 + MER31-int LTR ERV1 3887 4061 -875 29 60 0 0 chr4 124409419 124409469 -77918878 + AT_rich Low_complexity Low_complexity 1 50 0 917 206 0 11 chr4 124409983 124410167 -77918180 - MER83B LTR ERV1 -13 365 184 24 0 0 0 chr4 124410507 124410531 -77917816 + AT_rich Low_complexity Low_complexity 1 24 0 233 236 0 0 chr4 124410850 124410905 -77917442 + (TAA)n Simple_repeat Simple_repeat 1 55 0 208 271 90 68 chr4 124410927 124411060 -77917287 - MIR SINE MIR -31 231 96 490 318 14 14 chr4 124411070 124411218 -77917129 + MER77 LTR ERV1 5 152 -453 391 73 0 0 chr4 124411409 124411464 -77916883 - MLT2B1 LTR ERVL -2 518 464 308 213 32 69 chr4 124411490 124411609 -77916738 - L1MCa LINE L1 -1337 6985 1988 461 226 0 0 chr4 124411648 124411741 -77916606 - MLT2B2 LTR ERVL -40 475 383 392 378 0 0 chr4 124412923 124413087 -77915260 - MIR SINE MIR -26 236 73 213 39 0 0 chr4 124413224 124413250 -77915097 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 223 232 0 0 chr4 124413752 124413808 -77914539 + CT-rich Low_complexity Low_complexity 1 56 0 1985 133 30 7 chr4 124414132 124414432 -77913915 - AluSx SINE Alu -5 307 1 183 346 178 10 chr4 124414603 124414704 -77913643 + L2 LINE L2 3195 3312 -1 23 33 0 0 chr4 124415086 124415116 -77913231 + AT_rich Low_complexity Low_complexity 1 30 0 416 299 118 65 chr4 124416437 124416962 -77911385 - MLT1H1 LTR MaLR 0 555 3 227 305 21 32 chr4 124417091 124417186 -77911161 + L2 LINE L2 3210 3303 -10 203 133 0 0 chr4 124417387 124417417 -77910930 + (CA)n Simple_repeat Simple_repeat 1 30 0 2384 55 3 6 chr4 124417877 124418189 -77910158 + AluY SINE Alu 1 311 0 25 51 0 0 chr4 124418934 124418973 -77909374 + AT_rich Low_complexity Low_complexity 1 39 0 332 310 41 6 chr4 124419225 124419355 -77908992 + MIR SINE MIR 19 150 -58 821 328 126 17 chr4 124419545 124420356 -77907991 - L2 LINE L2 0 3313 2416 590 274 98 14 chr4 124420391 124420606 -77907741 + MIR SINE MIR 5 237 -25 416 305 113 0 chr4 124420799 124420976 -77907371 + MIR SINE MIR 6 202 -60 506 290 48 5 chr4 124420993 124421179 -77907168 - L2 LINE L2 -937 2377 2184 2214 136 19 27 chr4 124421847 124422214 -77906133 - THE1B LTR MaLR 0 364 1 261 306 59 0 chr4 124422310 124422395 -77905952 + MIR SINE MIR 103 192 -70 273 232 0 0 chr4 124423636 124423692 -77904655 + MIR SINE MIR 88 143 -119 1076 313 124 4 chr4 124423771 124424222 -77904125 + MLT1H1 LTR MaLR 42 546 -9 317 261 11 0 chr4 124424537 124424629 -77903718 - L1M4 LINE L1 -2103 4043 3951 217 297 172 8 chr4 124424673 124424801 -77903546 + L2 LINE L2 3161 3309 -4 26 0 0 0 chr4 124425054 124425080 -77903267 + AT_rich Low_complexity Low_complexity 1 26 0 369 225 0 0 chr4 124425218 124425289 -77903058 - MIR SINE MIR -118 144 74 1739 175 98 66 chr4 124426365 124426806 -77901541 - MER31B LTR ERV1 0 466 12 743 218 4 79 chr4 124427098 124427350 -77900997 - L1M4 LINE L1 -3140 3006 2774 * 1694 211 50 5 chr4 124427335 124427737 -77900610 + L1MA10 LINE L1 5914 6333 -1 651 274 118 11 chr4 124428579 124428936 -77899411 + L1M4 LINE L1 4377 4771 -1375 296 314 54 60 chr4 124428978 124429155 -77899192 - MIR SINE MIR -63 199 21 23 54 0 0 chr4 124430019 124430056 -77898291 + AT_rich Low_complexity Low_complexity 1 37 0 787 197 47 28 chr4 124431321 124431534 -77896813 - MER67C LTR ERV1 -493 217 1 24 32 0 0 chr4 124431573 124431604 -77896743 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 124431706 124431730 -77896617 + AT_rich Low_complexity Low_complexity 1 24 0 1965 258 70 53 chr4 124432384 124433200 -77895147 - L1ME1 LINE L1 -20 6146 5296 4811 123 5 4 chr4 124433200 124433947 -77894400 - L1PA14 LINE L1 -2 6159 5412 1965 258 70 53 chr4 124433947 124434204 -77894143 - L1ME1 LINE L1 -870 5296 5045 22 0 0 0 chr4 124434574 124434596 -77893751 + AT_rich Low_complexity Low_complexity 1 22 0 730 291 83 31 chr4 124435179 124435715 -77892632 + MLT1G1 LTR MaLR 9 574 -16 4396 125 20 8 chr4 124436097 124436753 -77891594 + LTR62 LTR ERVK 25 688 -31 351 314 72 29 chr4 124436970 124437177 -77891170 + MIR SINE MIR 8 223 -39 230 274 150 9 chr4 124437227 124437340 -77891007 + L2 LINE L2 2129 2257 -1057 228 265 229 12 chr4 124438497 124438580 -77889767 - MER5B DNA MER1_type 0 178 78 631 236 111 5 chr4 124440471 124440670 -77887677 - Charlie1 DNA MER1_type -831 1930 1711 986 263 126 34 chr4 124440705 124441180 -77887167 - LTR40a LTR ERVL 0 519 1 847 297 46 12 chr4 124441190 124441490 -77886857 - HERVL40 LTR ERVL -10 5520 2818 180 0 0 0 chr4 124442631 124442651 -77885696 + (A)n Simple_repeat Simple_repeat 1 20 0 2040 294 56 27 chr4 124442651 124444197 -77884150 - HERVL40 LTR ERVL -1336 4194 2569 569 287 5 38 chr4 124444244 124444453 -77883894 - HERVL40 LTR ERVL -3921 1609 1408 2292 101 3 0 chr4 124444577 124444874 -77883473 + AluSx SINE Alu 2 299 -13 22 35 0 0 chr4 124445054 124445083 -77883264 + AT_rich Low_complexity Low_complexity 1 29 0 325 300 109 35 chr4 124445813 124446135 -77882212 - MLT1F1 LTR MaLR -32 535 150 255 417 8 0 chr4 124446141 124446273 -77882074 - MLT1H1 LTR MaLR -351 204 72 37 62 0 0 chr4 124446289 124446354 -77881993 + AT_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr4 124446462 124446490 -77881857 + AT_rich Low_complexity Low_complexity 1 28 0 2191 261 39 67 chr4 124446520 124447351 -77880996 + L1M4 LINE L1 10 816 -5726 8045 169 21 3 chr4 124447354 124448783 -77879564 - Tigger1 DNA MER2_type 0 2418 965 1753 80 12 36 chr4 124448783 124449034 -77879313 + AluSc SINE Alu 38 282 -27 24 0 0 0 chr4 124449034 124449058 -77879289 + AT_rich Low_complexity Low_complexity 1 24 0 299 146 0 0 chr4 124449058 124449106 -77879241 - Tigger1 DNA MER2_type -1442 976 929 1128 204 9 0 chr4 124449123 124449344 -77879003 - Tigger1 DNA MER2_type -2191 227 5 2958 266 59 45 chr4 124449348 124451385 -77876962 + L1M4 LINE L1 818 3013 -3631 2042 128 0 3 chr4 124451385 124451675 -77876672 + AluSx SINE Alu 3 291 -21 2958 266 59 45 chr4 124451675 124452879 -77875468 + L1M4 LINE L1 3013 4200 -2444 2169 113 0 0 chr4 124452917 124453209 -77875138 - AluSg SINE Alu -17 293 2 22 0 0 0 chr4 124453573 124453595 -77874752 + AT_rich Low_complexity Low_complexity 1 22 0 285 333 116 24 chr4 124453604 124453811 -77874536 + MIR SINE MIR 30 255 -7 215 299 23 35 chr4 124453865 124453952 -77874395 - MER5A DNA MER1_type -41 148 63 505 273 142 55 chr4 124455465 124455637 -77872710 - MLT1H LTR MaLR -16 533 377 207 0 0 0 chr4 124455637 124455660 -77872687 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 505 273 142 55 chr4 124455660 124455853 -77872494 - MLT1H LTR MaLR -172 377 136 455 292 144 20 chr4 124456692 124456887 -77871460 - MLT1H LTR MaLR -88 461 243 259 315 0 0 chr4 124457121 124457194 -77871153 - LTR16A LTR ERVL -316 134 62 216 0 0 0 chr4 124458702 124458726 -77869621 + (T)n Simple_repeat Simple_repeat 1 24 0 195 262 0 66 chr4 124458794 124458855 -77869492 + L3 LINE CR1 733 789 -788 22 35 0 0 chr4 124458944 124458973 -77869374 + AT_rich Low_complexity Low_complexity 1 29 0 649 270 136 45 chr4 124459508 124460001 -77868346 + L1MDa LINE L1 1740 2277 -4263 204 125 0 0 chr4 124460040 124460072 -77868275 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 462 236 58 114 chr4 124460283 124460626 -77867721 + L1MC4a LINE L1 5614 5937 -1871 29 0 0 0 chr4 124460813 124460842 -77867505 + AT_rich Low_complexity Low_complexity 1 29 0 2634 76 0 36 chr4 124461147 124461540 -77866807 - L1P LINE L1 -1402 4744 4366 21 89 0 0 chr4 124461950 124462006 -77866341 + AT_rich Low_complexity Low_complexity 1 56 0 27 0 0 0 chr4 124462379 124462406 -77865941 + AT_rich Low_complexity Low_complexity 1 27 0 184 254 9 9 chr4 124462886 124463000 -77865347 + (TA)n Simple_repeat Simple_repeat 1 114 0 717 234 26 0 chr4 124463005 124463159 -77865188 - MER2 DNA MER2_type -187 158 1 533 274 27 0 chr4 124463160 124463306 -77865041 + LTR40b LTR ERVL 304 453 -9 480 168 44 35 chr4 124463388 124463501 -77864846 - L1ME LINE L1 -437 5727 5614 18786 174 26 20 chr4 124463556 124467122 -77861225 + L1M1 LINE L1 12 3600 -3965 7533 213 32 25 chr4 124467132 124467330 -77861017 + L1M1 LINE L1 3723 3918 -3647 261 0 0 0 chr4 124467330 124467359 -77860988 + (GA)n Simple_repeat Simple_repeat 2 30 0 7533 213 32 25 chr4 124467359 124469100 -77859247 + L1M1 LINE L1 3918 5677 -1888 1089 149 8 57 chr4 124469108 124469356 -77858991 + L1M1 LINE L1 5816 6051 -1514 1841 175 8 0 chr4 124469356 124469704 -77858643 + L1MA3 LINE L1 5948 6305 0 3535 205 34 32 chr4 124469880 124471101 -77857246 - L1PA12 LINE L1 -4232 3352 1321 1943 69 0 121 chr4 124471101 124471433 -77856914 + AluY SINE Alu 1 292 -9 3535 205 34 32 chr4 124471433 124471781 -77856566 - L1PA12 LINE L1 -6263 1321 975 1548 229 81 7 chr4 124471835 124472328 -77856019 - L1MCa LINE L1 -3904 2522 1991 1666 269 46 34 chr4 124472328 124473328 -77855019 - L1MC/D LINE L1 -750 5396 4424 1634 176 62 17 chr4 124473337 124473694 -77854653 + THE1C LTR MaLR 3 375 0 5628 142 10 49 chr4 124473694 124474709 -77853638 + THE1C-int LTR MaLR 1 975 -605 459 149 0 0 chr4 124474709 124474783 -77853564 + MSTA LTR MaLR 354 427 -1 2138 264 44 81 chr4 124474785 124476563 -77851784 - L1MC/D LINE L1 -1730 4416 2531 958 242 54 67 chr4 124476578 124477058 -77851289 + L1ME1 LINE L1 5690 6163 -3 779 187 37 5 chr4 124477897 124478111 -77850236 + L1MCa LINE L1 1787 2007 -4419 2405 57 0 20 chr4 124479528 124479829 -77848518 - AluY SINE Alu -16 295 1 30881 117 14 53 chr4 124479853 124486248 -77842099 - L1PA7 LINE L1 -1 6153 12 1385 269 19 38 chr4 124486522 124486995 -77841352 + MLT1C LTR MaLR 4 467 0 23 68 0 0 chr4 124487130 124487174 -77841173 + AT_rich Low_complexity Low_complexity 1 44 0 4691 207 10 5 chr4 124487229 124488167 -77840180 + L1MC1 LINE L1 5391 6332 -1 314 344 103 31 chr4 124488465 124488514 -77839833 + MIR SINE MIR 23 67 -195 3133 143 2 49 chr4 124488514 124489067 -77839280 - MER1A DNA MER1_type 0 527 1 314 344 103 31 chr4 124489067 124489212 -77839135 + MIR SINE MIR 67 231 -31 374 239 344 24 chr4 124489785 124490116 -77838231 + L2 LINE L2 1950 2386 -928 349 350 89 60 chr4 124490092 124490541 -77837806 + L2 LINE L2 2852 3313 0 * 1383 273 79 24 chr4 124490645 124491050 -77837297 + MLT1D LTR MaLR 1 437 -68 10469 34 1 0 chr4 124491050 124493067 -77835280 + L1PA4 LINE L1 4132 6148 -7 1383 273 79 24 chr4 124493067 124493130 -77835217 + MLT1D LTR MaLR 437 495 -10 242 278 19 9 chr4 124493414 124493522 -77834825 - LTR37B LTR ERV1 -12 456 348 24 67 0 0 chr4 124493747 124493792 -77834555 + AT_rich Low_complexity Low_complexity 1 45 0 35 24 0 0 chr4 124493960 124494002 -77834345 + AT_rich Low_complexity Low_complexity 1 42 0 1087 100 6 0 chr4 124495364 124495524 -77832823 - L1PA13 LINE L1 0 6163 6003 753 214 58 132 chr4 124495903 124496296 -77832051 + MLT1A1 LTR MaLR 2 365 0 23 33 0 0 chr4 124497149 124497179 -77831168 + AT_rich Low_complexity Low_complexity 1 30 0 730 280 23 27 chr4 124497865 124498122 -77830225 - MIR SINE MIR -2 260 5 1603 133 82 85 chr4 124499309 124499685 -77828662 + THE1C LTR MaLR 1 375 0 586 131 0 0 chr4 124500669 124500768 -77827579 + L1PA15 LINE L1 6066 6164 -1 556 190 4 11 chr4 124500812 124500943 -77827404 + L1MA3 LINE L1 6168 6294 -6 25 0 0 0 chr4 124501822 124501847 -77826500 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr4 124502305 124502347 -77826000 + AT_rich Low_complexity Low_complexity 1 42 0 471 132 0 0 chr4 124502552 124502643 -77825704 + (TA)n Simple_repeat Simple_repeat 2 92 0 22 56 0 0 chr4 124502959 124502995 -77825352 + AT_rich Low_complexity Low_complexity 1 36 0 2119 111 0 9 chr4 124503228 124503544 -77824803 - AluSq SINE Alu 0 313 1 1025 162 0 0 chr4 124503565 124503732 -77824615 - L1PA16 LINE L1 -9 6157 5991 526 106 12 12 chr4 124503747 124503832 -77824515 + L1P LINE L1 4488 4572 -1574 * 2182 119 8 17 chr4 124503828 124504189 -77824158 - L1PA16 LINE L1 -176 5990 5633 28 29 0 0 chr4 124504902 124504937 -77823410 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr4 124505231 124505257 -77823090 + AT_rich Low_complexity Low_complexity 1 26 0 49 18 0 0 chr4 124506033 124506089 -77822258 + AT_rich Low_complexity Low_complexity 1 56 0 271 273 206 10 chr4 124506172 124506381 -77821966 + L1MB7 LINE L1 5920 6169 -15 24 32 0 0 chr4 124506671 124506702 -77821645 + AT_rich Low_complexity Low_complexity 1 31 0 548 211 99 7 chr4 124507014 124507156 -77821191 - MER20 DNA MER1_type -33 186 32 26 0 0 0 chr4 124507850 124507876 -77820471 + AT_rich Low_complexity Low_complexity 1 26 0 42023 36 23 1 chr4 124507932 124513944 -77814403 - L1PA3 LINE L1 0 6155 6 2611 48 0 0 chr4 124514893 124515204 -77813143 + AluY SINE Alu 1 311 0 28 29 0 0 chr4 124517507 124517542 -77810805 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 124518485 124518508 -77809839 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr4 124519122 124519142 -77809205 + (T)n Simple_repeat Simple_repeat 1 20 0 414 0 0 0 chr4 124519270 124519316 -77809031 + (TG)n Simple_repeat Simple_repeat 1 46 0 362 56 42 14 chr4 124519978 124520049 -77808298 + (TA)n Simple_repeat Simple_repeat 2 74 0 592 177 190 0 chr4 124520807 124520965 -77807382 + L1MB4 LINE L1 5993 6180 0 259 161 0 97 chr4 124521167 124521229 -77807118 - MLT1G1 LTR MaLR -539 56 1 311 186 0 0 chr4 124521378 124521437 -77806910 + MSTC LTR MaLR 1 59 -369 2460 279 115 18 chr4 124521457 124521922 -77806425 + MSTD-int LTR MaLR 861 1279 -456 490 30 30 0 chr4 124521922 124521988 -77806359 + L1PA6 LINE L1 6087 6154 0 2460 279 115 18 chr4 124521988 124522319 -77806028 + MSTD-int LTR MaLR 1279 1735 0 1265 216 86 55 chr4 124522319 124522703 -77805644 + MSTD LTR MaLR 1 396 0 21 0 0 0 chr4 124522866 124522887 -77805460 + AT_rich Low_complexity Low_complexity 1 21 0 245 324 113 60 chr4 124526683 124527133 -77801214 + L2 LINE L2 2043 2516 -798 1790 311 140 19 chr4 124527182 124528059 -77800288 + L2 LINE L2 1138 2120 -1194 1686 282 129 37 chr4 124529236 124530164 -77798183 + L2 LINE L2 2099 3262 -51 352 381 49 51 chr4 124530255 124530840 -77797507 + L2 LINE L2 2682 3263 -9 30 59 0 0 chr4 124531275 124531326 -77797021 + AT_rich Low_complexity Low_complexity 1 51 0 452 329 150 14 chr4 124531395 124531608 -77796739 + MIR SINE MIR 20 261 -1 23 0 0 0 chr4 124532110 124532133 -77796214 + AT_rich Low_complexity Low_complexity 1 23 0 1133 242 34 20 chr4 124532397 124532522 -77795825 + AluJo SINE Alu 1 123 -179 320 43 22 0 chr4 124532522 124532568 -77795779 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1133 242 34 20 chr4 124532568 124532740 -77795607 + AluJo SINE Alu 123 302 0 22 0 0 0 chr4 124533368 124533390 -77794957 + AT_rich Low_complexity Low_complexity 1 22 0 471 233 196 6 chr4 124634064 124634227 -77694120 + L2 LINE L2 2181 2374 -940 582 289 78 10 chr4 124634277 124634481 -77693866 - MIR SINE MIR -21 241 24 2663 183 42 41 chr4 124634481 124635071 -77693276 - LTR59 LTR ERV1 -6 591 1 805 339 130 21 chr4 124635087 124635944 -77692403 + L2 LINE L2 2370 3311 -2 203 100 25 25 chr4 124635985 124636025 -77692322 + (CA)n Simple_repeat Simple_repeat 2 41 0 1814 177 0 3 chr4 124636746 124637040 -77691307 - AluSx SINE Alu -19 293 1 540 181 8 9 chr4 124637407 124637542 -77690805 + L1MCb LINE L1 1098 1231 -4853 1288 208 45 35 chr4 124637563 124637966 -77690381 + L1MCb LINE L1 3246 3652 -2912 254 59 39 78 chr4 124637975 124638026 -77690321 + L1MC1 LINE L1 5279 5327 -857 578 212 0 0 chr4 124638027 124638145 -77690202 + L1MC1 LINE L1 5406 5523 -810 284 145 48 0 chr4 124638218 124638280 -77690067 + L1MCb LINE L1 1102 1166 -4879 3558 183 27 34 chr4 124638283 124639085 -77689262 + L1MC1 LINE L1 5529 6325 -8 1289 211 65 31 chr4 124639912 124640267 -77688080 - LTR52 LTR ERVL -38 383 17 1653 29 0 14 chr4 124640268 124640478 -77687869 + L1PA4 LINE L1 5949 6155 0 2020 141 2 100 chr4 124640651 124640832 -77687515 - MER57A LTR ERV1 0 403 206 1539 192 6 38 chr4 124640832 124641150 -77687197 + AluJo SINE Alu 3 310 -2 2020 141 2 100 chr4 124641150 124641407 -77686940 - MER57A LTR ERV1 -197 206 8 626 267 99 6 chr4 124643683 124643855 -77684492 + LTR16B LTR ERVL 3 190 -274 1776 152 61 30 chr4 124643887 124644249 -77684098 + THE1C LTR MaLR 3 375 0 2145 167 13 8 chr4 124644463 124644853 -77683494 + MER65A LTR ERV1 1 392 -53 3448 233 62 64 chr4 124644884 124646215 -77682132 + MER65A-int LTR ERV1 8 1335 -3536 3041 182 37 47 chr4 124646274 124647036 -77681311 + MER65A-int LTR ERV1 1358 2111 -2760 7827 208 111 3 chr4 124647057 124649001 -77679346 - L1 LINE L1 -1139 6426 4274 1972 150 137 11 chr4 124649001 124649381 -77678966 + MSTA LTR MaLR 1 428 0 4586 201 27 12 chr4 124649381 124650299 -77678048 + MSTA-int LTR MaLR 1 932 -719 356 153 0 0 chr4 124650300 124650359 -77677988 - MSTA LTR MaLR 0 428 370 2096 160 80 10 chr4 124650359 124650746 -77677601 - MSTA LTR MaLR -12 416 3 4432 152 14 10 chr4 124650748 124651465 -77676882 + MSTA-int LTR MaLR 861 1580 0 1976 147 137 11 chr4 124651465 124651845 -77676502 + MSTA LTR MaLR 1 428 0 5944 187 23 21 chr4 124651846 124653643 -77674704 - L1 LINE L1 -3288 4277 2475 231 262 16 0 chr4 124654020 124654081 -77674266 + (TA)n Simple_repeat Simple_repeat 1 62 0 316 187 13 13 chr4 124654081 124654156 -77674191 + L1MCa LINE L1 2002 2076 -4350 316 220 11 55 chr4 124654148 124654239 -77674108 - L1MC4 LINE L1 -1337 6705 6619 244 255 29 0 chr4 124654280 124654382 -77673965 + (TA)n Simple_repeat Simple_repeat 1 105 0 22 35 0 0 chr4 124654652 124654681 -77673666 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 124655954 124655975 -77672372 + AT_rich Low_complexity Low_complexity 1 21 0 1584 141 0 4 chr4 124656137 124656371 -77671976 + AluJb SINE Alu 65 297 -15 450 400 31 3 chr4 124657695 124658062 -77670285 + HERV16 LTR ERVL 2740 3086 -1910 3343 187 34 73 chr4 124658169 124658474 -77669873 - L1MB3 LINE L1 -3 6180 5864 1579 171 139 78 chr4 124658474 124658567 -77669780 - MLT2B1 LTR ERVL 0 520 434 393 22 0 0 chr4 124658567 124658613 -77669734 + (CA)n Simple_repeat Simple_repeat 1 46 0 1579 171 139 78 chr4 124658613 124659009 -77669338 - MLT2B1 LTR ERVL -86 434 1 3343 187 34 73 chr4 124659009 124659565 -77668782 - L1MB3 LINE L1 -319 5864 5353 612 270 17 17 chr4 124659918 124660096 -77668251 + MER5B DNA MER1_type 1 178 0 24 85 0 0 chr4 124661305 124661364 -77666983 + AT_rich Low_complexity Low_complexity 1 59 0 684 218 109 0 chr4 124662235 124662428 -77665919 - MER20 DNA MER1_type -4 215 2 25 0 0 0 chr4 124663107 124663132 -77665215 + AT_rich Low_complexity Low_complexity 1 25 0 1230 52 0 0 chr4 124663474 124663628 -77664719 - L1PA6 LINE L1 -8 6146 5993 21 0 0 0 chr4 124664674 124664695 -77663652 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 124665178 124665200 -77663147 + AT_rich Low_complexity Low_complexity 1 22 0 936 251 14 7 chr4 124665472 124665751 -77662596 - L1MC2 LINE L1 0 6344 6064 1217 132 21 0 chr4 124666206 124666396 -77661951 - L1P LINE L1 -2233 3913 3720 10850 166 39 15 chr4 124666399 124668414 -77659933 - Tigger1 DNA MER2_type -354 2064 1 294 227 0 0 chr4 124668442 124668517 -77659830 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 733 114 17 148 chr4 124668535 124668711 -77659636 - Tigger1 DNA MER2_type -923 1495 1343 263 94 0 19 chr4 124668707 124668760 -77659587 + LTR66 LTR ERVL 388 439 -171 * 225 255 31 10 chr4 124668760 124668858 -77659489 + (TA)n Simple_repeat Simple_repeat 2 101 0 276 241 23 23 chr4 124668858 124668945 -77659402 - L1MC4 LINE L1 -1339 6703 6617 430 289 30 51 chr4 124669613 124669810 -77658537 + L1ME LINE L1 5538 5730 -391 27 0 0 0 chr4 124669927 124669954 -77658393 + AT_rich Low_complexity Low_complexity 1 27 0 693 65 0 0 chr4 124670465 124670558 -77657789 + L1PA3 LINE L1 6063 6155 0 240 35 0 0 chr4 124671160 124671189 -77657158 + (CA)n Simple_repeat Simple_repeat 2 30 0 326 292 106 0 chr4 124673233 124673394 -77654953 + MER112 DNA MER1_type 70 247 -13 27 29 0 0 chr4 124673788 124673822 -77654525 + AT_rich Low_complexity Low_complexity 1 34 0 591 330 54 45 chr4 124675278 124675853 -77652494 + HAL1 LINE L1 385 964 -1543 399 297 45 54 chr4 124675885 124676107 -77652240 + HAL1 LINE L1 1056 1275 -1232 1840 276 44 22 chr4 124676136 124676723 -77651624 + L1M4 LINE L1 3817 4431 -1715 2004 191 40 24 chr4 124676723 124677148 -77651199 + MSTB1 LTR MaLR 1 432 0 1840 276 44 22 chr4 124677148 124677426 -77650921 + L1M4 LINE L1 4431 4701 -1445 2323 148 53 12 chr4 124678907 124679318 -77649029 - MSTA LTR MaLR 0 428 1 249 33 0 0 chr4 124679742 124679772 -77648575 + (CA)n Simple_repeat Simple_repeat 1 30 0 207 277 0 0 chr4 124679837 124679884 -77648463 + (CTA)n Simple_repeat Simple_repeat 1 47 0 589 287 46 0 chr4 124681408 124681582 -77646765 - MLT1D LTR MaLR -323 182 1 252 0 0 0 chr4 124681719 124681747 -77646600 + (TA)n Simple_repeat Simple_repeat 1 28 0 254 351 8 60 chr4 124681996 124682130 -77646217 - MIR SINE MIR -116 146 20 346 302 45 99 chr4 124683532 124683774 -77644573 + MIR SINE MIR 34 261 -1 4006 291 71 14 chr4 124684885 124686787 -77641560 - L1M4c LINE L1 -4787 2172 154 22 35 0 0 chr4 124686812 124686841 -77641506 + AT_rich Low_complexity Low_complexity 1 29 0 1105 226 30 36 chr4 124686841 124687146 -77641201 - L1PB4 LINE L1 -1 6155 5853 386 255 11 0 chr4 124687144 124687238 -77641109 - L1M4b LINE L1 -5758 1101 1007 * 3088 177 34 5 chr4 124687233 124688348 -77639999 - L1PB4 LINE L1 -304 5852 4709 312 252 0 96 chr4 124688343 124688458 -77639889 - L1M4c LINE L1 -6743 116 13 * 709 262 95 55 chr4 124688677 124689246 -77639101 + L1MEc LINE L1 819 1410 -5153 1434 297 78 27 chr4 124689255 124690274 -77638073 + L1MEc LINE L1 1295 2519 -4044 322 260 14 14 chr4 124690721 124690946 -77637401 + CT-rich Low_complexity Low_complexity 1 225 0 356 171 0 43 chr4 124692846 124692916 -77635431 + Tigger2 DNA MER2_type 2 68 -2650 2068 187 50 2 chr4 124692924 124693326 -77635021 + Tigger2 DNA MER2_type 2298 2718 0 415 341 75 15 chr4 124693504 124693903 -77634444 - L1ME3 LINE L1 -231 6349 5927 26 0 0 0 chr4 124693914 124693940 -77634407 + AT_rich Low_complexity Low_complexity 1 26 0 311 119 0 17 chr4 124694757 124694816 -77633531 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 375 296 35 24 chr4 124695087 124695256 -77633091 + ERVL LTR ERVL 4910 5080 -684 305 295 11 0 chr4 124695272 124695367 -77632980 + MER77 LTR ERV1 463 558 -47 1347 239 52 0 chr4 124695369 124695738 -77632609 - L1MC3 LINE L1 -1113 6672 6285 415 238 9 9 chr4 124695741 124695846 -77632501 - L1MCa LINE L1 -5962 464 360 30 59 0 0 chr4 124696481 124696532 -77631815 + AT_rich Low_complexity Low_complexity 1 51 0 1025 178 80 20 chr4 124698102 124698393 -77629954 - THE1C LTR MaLR 0 375 1 9255 139 49 7 chr4 124698403 124699877 -77628470 - THE1B-int LTR MaLR -10 1570 35 779 255 119 35 chr4 124699897 124700293 -77628054 - MER50 LTR ERV1 -296 438 10 389 143 0 39 chr4 124700301 124700378 -77627969 + THE1C-int LTR MaLR 1507 1580 0 1706 170 64 19 chr4 124700378 124700737 -77627610 + THE1C LTR MaLR 1 375 0 2116 169 35 35 chr4 124700898 124701167 -77627180 - Tigger2a DNA MER2_type -2275 433 162 2251 141 31 3 chr4 124701167 124701521 -77626826 - THE1B LTR MaLR 0 364 1 2116 169 35 35 chr4 124701521 124701684 -77626663 - Tigger2a DNA MER2_type -2545 163 1 222 91 0 0 chr4 124702178 124702211 -77626136 + (CA)n Simple_repeat Simple_repeat 1 33 0 1503 132 68 65 chr4 124702510 124702820 -77625527 - MER44D DNA MER2_type 0 609 29 1721 171 53 31 chr4 124703797 124704153 -77624194 + THE1B LTR MaLR 1 364 0 420 282 57 17 chr4 124704674 124704959 -77623388 - L1ME3 LINE L1 -667 5913 5616 390 279 89 56 chr4 124705040 124705351 -77622996 - L1ME3 LINE L1 -4313 2252 1793 1987 130 32 40 chr4 124705657 124706035 -77622312 - THE1C LTR MaLR 0 375 1 49 18 0 0 chr4 124706515 124706571 -77621776 + AT_rich Low_complexity Low_complexity 1 56 0 293 292 39 69 chr4 124707380 124707510 -77620837 - L2 LINE L2 -1 3312 3187 180 0 0 0 chr4 124709038 124709058 -77619289 + (AAATG)n Simple_repeat Simple_repeat 3 22 0 1407 211 20 23 chr4 124709269 124709573 -77618774 + AluJo SINE Alu 3 305 -7 303 237 129 22 chr4 124709855 124709994 -77618353 - Zaphod DNA AcHobo 0 4031 3878 810 333 87 19 chr4 124710032 124710447 -77617900 - Zaphod DNA AcHobo -3466 565 123 234 0 0 0 chr4 124710476 124710502 -77617845 + (TG)n Simple_repeat Simple_repeat 1 26 0 4705 50 3 0 chr4 124710544 124711129 -77617218 + LTR14C LTR ERVK 1 587 0 1449 171 14 31 chr4 124711516 124711832 -77616515 - AluSx SINE Alu 0 311 1 26 0 0 0 chr4 124712688 124712714 -77615633 + AT_rich Low_complexity Low_complexity 1 26 0 1629 180 75 63 chr4 124713088 124713515 -77614832 - MSTB1 LTR MaLR 0 432 1 32 0 0 0 chr4 124713855 124713887 -77614460 + AT_rich Low_complexity Low_complexity 1 32 0 795 307 67 0 chr4 124714078 124714332 -77614015 + LTR16A LTR ERVL 180 450 0 597 320 54 19 chr4 124714490 124714749 -77613598 - L1ME3 LINE L1 -5648 397 130 252 221 242 0 chr4 124715432 124715527 -77612820 + L1MC5 LINE L1 7706 7823 -138 626 162 37 7 chr4 124716182 124716318 -77612029 + L1MA6 LINE L1 6161 6300 0 243 340 105 25 chr4 124716519 124716681 -77611666 + L2 LINE L2 3098 3272 0 25 31 0 0 chr4 124716807 124716839 -77611508 + AT_rich Low_complexity Low_complexity 1 32 0 2381 72 13 0 chr4 124717160 124717467 -77610880 - AluY SINE Alu 0 311 1 30 0 0 0 chr4 124718253 124718283 -77610064 + AT_rich Low_complexity Low_complexity 1 30 0 410 306 45 8 chr4 124719710 124719844 -77608503 + L2 LINE L2 3165 3303 -10 624 166 7 35 chr4 124719876 124720021 -77608326 + L1MA5 LINE L1 6160 6300 0 240 250 16 0 chr4 124720025 124720089 -77608258 + (TAAA)n Simple_repeat Simple_repeat 2 66 0 2266 85 0 25 chr4 124720236 124720555 -77607792 + AluY SINE Alu 1 311 0 33 80 0 0 chr4 124721283 124721358 -77606989 + AT_rich Low_complexity Low_complexity 1 75 0 2630 48 0 0 chr4 124722304 124722614 -77605733 - AluY SINE Alu 0 311 2 192 184 0 0 chr4 124722888 124722937 -77605410 + CT-rich Low_complexity Low_complexity 2 50 0 303 283 164 7 chr4 124722941 124723093 -77605254 + L2 LINE L2 2555 2730 -584 231 36 0 0 chr4 124723687 124723715 -77604632 + (TG)n Simple_repeat Simple_repeat 2 29 0 210 154 0 0 chr4 124723823 124723862 -77604485 + (TA)n Simple_repeat Simple_repeat 1 39 0 21 0 0 0 chr4 124724482 124724503 -77603844 + AT_rich Low_complexity Low_complexity 1 21 0 309 258 121 23 chr4 124725004 124725136 -77603211 - L1MC4 LINE L1 -792 7250 7106 551 200 0 0 chr4 124725205 124725310 -77603037 - FRAM SINE Alu -1 175 71 533 169 0 68 chr4 124725340 124725458 -77602889 - FLAM_C SINE Alu -22 121 12 250 294 20 29 chr4 124725685 124725787 -77602560 - L1MC5 LINE L1 -1101 6860 6760 235 293 40 50 chr4 124725782 124725881 -77602466 - L1MC4a LINE L1 -1093 6715 6618 * 432 0 0 0 chr4 124725889 124725937 -77602410 + (TA)n Simple_repeat Simple_repeat 1 48 0 403 283 42 12 chr4 124726315 124726481 -77601866 - L1MC4a LINE L1 -1968 5840 5670 21 0 0 0 chr4 124727164 124727185 -77601162 + AT_rich Low_complexity Low_complexity 1 21 0 1172 271 127 6 chr4 124727613 124728116 -77600231 - L1ME1 LINE L1 -46 6120 5737 1088 215 8 58 chr4 124728122 124728382 -77599965 + AluJo SINE Alu 8 254 -58 2151 118 3 10 chr4 124728391 124728704 -77599643 - AluY SINE Alu 0 311 1 241 296 82 77 chr4 124728714 124728910 -77599437 + L1MCb LINE L1 603 799 -5623 744 315 58 3 chr4 124729440 124729786 -77598561 + L1MCb LINE L1 1153 1517 -4906 * 1674 200 46 18 chr4 124729785 124730175 -77598172 + L1MA7 LINE L1 5881 6281 -10 1726 171 7 17 chr4 124730931 124731224 -77597123 - AluJb SINE Alu -22 290 1 27 62 0 0 chr4 124731363 124731411 -77596936 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr4 124732148 124732172 -77596175 + AT_rich Low_complexity Low_complexity 1 24 0 1796 126 9 71 chr4 124732472 124732797 -77595550 - AluSx SINE Alu -7 305 1 2794 84 0 0 chr4 124732833 124733190 -77595157 - THE1B LTR MaLR -7 357 1 216 186 85 17 chr4 124733420 124733479 -77594868 + MIR SINE MIR 198 260 -2 467 278 46 13 chr4 124733730 124733881 -77594466 - MIR SINE MIR -105 157 2 213 299 155 0 chr4 124733940 124734037 -77594310 - L2 LINE L2 0 3313 3202 1696 175 23 13 chr4 124735082 124735390 -77592957 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr4 124736170 124736192 -77592155 + AT_rich Low_complexity Low_complexity 1 22 0 236 178 10 129 chr4 124736202 124736303 -77592044 - L1MC4 LINE L1 -1340 6702 6614 * 278 206 22 43 chr4 124736225 124736317 -77592030 + L1MC4 LINE L1 6614 6703 -1339 210 244 0 0 chr4 124736318 124736359 -77591988 + (TATG)n Simple_repeat Simple_repeat 4 44 0 2185 179 130 19 chr4 124736361 124736830 -77591517 - LTR8A LTR ERV1 -206 521 1 8360 215 31 8 chr4 124737053 124739793 -77588554 + L1PA16 LINE L1 3264 6061 -105 336 136 17 0 chr4 124739794 124739853 -77588494 + L1PA16 LINE L1 6098 6157 -9 2197 103 0 35 chr4 124739930 124740249 -77588098 - AluSg1 SINE Alu -1 308 1 28 29 0 0 chr4 124740327 124740362 -77587985 + AT_rich Low_complexity Low_complexity 1 35 0 468 313 34 24 chr4 124742124 124742332 -77586015 + MIR SINE MIR 2 211 -51 196 385 77 22 chr4 124742811 124742993 -77585354 + L3b LINE CR1 1277 1468 -115 6702 62 13 9 chr4 124743260 124744283 -77584064 + L1PA7 LINE L1 5126 6153 -1 2432 183 28 8 chr4 124745748 124746608 -77581739 + L1MA3 LINE L1 3183 4062 -3503 1172 211 67 36 chr4 124746614 124746819 -77581528 + L1MA3 LINE L1 4283 4480 -3085 1540 228 0 0 chr4 124746819 124747108 -77581239 - AluJb SINE Alu -21 291 3 1172 211 67 36 chr4 124747108 124747347 -77581000 + L1MA3 LINE L1 4480 4741 -2824 25 51 0 0 chr4 124747945 124747984 -77580363 + AT_rich Low_complexity Low_complexity 1 39 0 1775 209 8 2 chr4 124748062 124748460 -77579887 + L1MA3 LINE L1 4715 5114 -2451 1166 207 23 35 chr4 124748479 124748761 -77579586 + AluJb SINE Alu 31 309 0 2900 151 68 37 chr4 124748761 124748833 -77579514 + L1MA3 LINE L1 5114 5182 -2541 2202 79 0 4 chr4 124748833 124749141 -77579206 + AluSc SINE Alu 1 307 0 2900 151 68 37 chr4 124749141 124749680 -77578667 + L1MA3 LINE L1 5182 7201 -522 303 179 36 0 chr4 124749686 124749770 -77578577 + (TA)n Simple_repeat Simple_repeat 2 88 0 2800 168 12 2 chr4 124749770 124750288 -77578059 + L1MA3 LINE L1 7201 7723 -1 297 326 253 11 chr4 124750605 124750783 -77577564 - MIR SINE MIR -41 221 1 225 262 37 93 chr4 124750927 124751034 -77577313 + MIR SINE MIR 106 206 -56 26 50 0 0 chr4 124751048 124751088 -77577259 + AT_rich Low_complexity Low_complexity 1 40 0 222 192 0 0 chr4 124751528 124751580 -77576767 + (TG)n Simple_repeat Simple_repeat 1 52 0 581 250 0 0 chr4 124752456 124752576 -77575771 - FLAM_A SINE Alu -12 121 2 33 43 0 0 chr4 124752863 124752910 -77575437 + AT_rich Low_complexity Low_complexity 1 47 0 284 276 112 66 chr4 124753419 124753615 -77574732 + MIR SINE MIR 58 262 0 2328 175 43 26 chr4 124756078 124756547 -77571800 - MER31A LTR ERV1 -8 477 1 29 47 0 0 chr4 124757114 124757157 -77571190 + AT_rich Low_complexity Low_complexity 1 43 0 180 111 0 0 chr4 124758490 124758517 -77569830 + (GAA)n Simple_repeat Simple_repeat 2 28 0 224 253 35 11 chr4 124758521 124758608 -77569739 + GA-rich Low_complexity Low_complexity 2 90 0 209 293 49 12 chr4 124759813 124759895 -77568452 + L2 LINE L2 1658 1742 -1572 202 146 0 24 chr4 124761782 124761823 -77566524 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 33 66 0 0 chr4 124761965 124762026 -77566321 + AT_rich Low_complexity Low_complexity 1 61 0 321 239 13 119 chr4 124762330 124762489 -77565858 - L2 LINE L2 -4 3309 3168 648 172 19 57 chr4 124762507 124762664 -77565683 + AluJo SINE Alu 16 166 -146 4856 131 9 9 chr4 124762664 124763451 -77564896 - L1P LINE L1 -1254 4892 4106 219 129 65 16 chr4 124763699 124763761 -77564586 + (TA)n Simple_repeat Simple_repeat 1 65 0 21 36 0 0 chr4 124764129 124764157 -77564190 + AT_rich Low_complexity Low_complexity 1 28 0 971 237 5 0 chr4 124765155 124765345 -77563002 - MER20 DNA MER1_type 0 219 29 289 137 0 0 chr4 124766134 124766185 -77562162 - MER67D LTR ERV1 -154 360 310 1532 143 134 38 chr4 124766244 124766586 -77561761 - THE1C LTR MaLR 0 375 1 951 219 69 82 chr4 124766586 124766892 -77561455 - MER67D LTR ERV1 -210 304 3 3246 169 28 63 chr4 124767325 124767701 -77560646 - L1MA6 LINE L1 0 6300 5961 7623 29 0 1 chr4 124767701 124769176 -77559171 + L1PA3 LINE L1 4682 6155 0 3246 169 28 63 chr4 124769176 124769523 -77558824 - L1MA6 LINE L1 -339 5961 5603 524 126 11 23 chr4 124770081 124770168 -77558179 - THE1C LTR MaLR -26 349 264 4212 230 26 46 chr4 124770671 124771509 -77556838 + MER45B DNA AcHobo 1 816 -765 2181 102 3 0 chr4 124771509 124771839 -77556508 - AluSq SINE Alu 0 331 1 4212 230 26 46 chr4 124771839 124772047 -77556300 + MER45B DNA AcHobo 816 1027 -13 1653 201 22 20 chr4 124773606 124773881 -77554466 - L1MB2 LINE L1 -5 6166 5888 1977 110 0 49 chr4 124773881 124774189 -77554158 - AluSg SINE Alu -17 293 1 1653 201 22 20 chr4 124774189 124774322 -77554025 - L1MB2 LINE L1 -283 5888 5757 2841 194 25 14 chr4 124774775 124775874 -77552473 - L1MB2 LINE L1 -424 5747 4639 459 0 0 0 chr4 124775890 124775941 -77552406 + (A)n Simple_repeat Simple_repeat 1 51 0 21 0 0 0 chr4 124776036 124776057 -77552290 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr4 124776293 124776320 -77552027 + (C)n Simple_repeat Simple_repeat 1 27 0 658 271 21 90 chr4 124776519 124776851 -77551496 - L1 LINE L1 -1322 4824 4516 234 0 0 0 chr4 124777108 124777134 -77551213 + (CA)n Simple_repeat Simple_repeat 2 27 0 1454 258 45 33 chr4 124777554 124778003 -77550344 - MLT1C LTR MaLR -6 461 8 266 345 17 0 chr4 124778324 124778443 -77549904 + CT-rich Low_complexity Low_complexity 5 125 0 268 325 40 8 chr4 124780132 124780258 -77548089 + ERVL LTR ERVL 1175 1304 -4460 1062 118 20 0 chr4 124780415 124780567 -77547780 + AluSg/x SINE Alu 142 296 -16 23 0 0 0 chr4 124782824 124782847 -77545500 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr4 124783129 124783155 -77545192 + AT_rich Low_complexity Low_complexity 1 26 0 2229 108 0 13 chr4 124783208 124783514 -77544833 - AluSc SINE Alu -7 302 1 27 29 0 0 chr4 124784440 124784474 -77543873 + AT_rich Low_complexity Low_complexity 1 34 0 376 298 207 39 chr4 124785900 124786108 -77542239 + MLT1H LTR MaLR 123 365 -184 699 300 159 27 chr4 124786523 124787006 -77541341 + MLT1H LTR MaLR 1 547 -2 2317 184 65 0 chr4 124787126 124787207 -77541140 + MER6 DNA MER2_type 135 209 -656 297 0 0 0 chr4 124787207 124787240 -77541107 + (TG)n Simple_repeat Simple_repeat 1 33 0 2317 184 65 0 chr4 124787240 124787592 -77540755 + MER6 DNA MER2_type 209 856 -9 2173 113 3 6 chr4 124787592 124787903 -77540444 + AluSx SINE Alu 1 310 -2 24 0 0 0 chr4 124788058 124788082 -77540265 + AT_rich Low_complexity Low_complexity 1 24 0 2002 128 17 0 chr4 124788147 124788436 -77539911 + AluSx SINE Alu 1 294 -18 21 36 0 0 chr4 124788766 124788794 -77539553 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 124789237 124789263 -77539084 + AT_rich Low_complexity Low_complexity 1 26 0 25 90 0 0 chr4 124789289 124789356 -77538991 + AT_rich Low_complexity Low_complexity 1 67 0 1589 173 44 0 chr4 124789502 124789800 -77538547 - AluJb SINE Alu 0 310 1 2440 70 0 0 chr4 124790363 124790665 -77537682 - AluY SINE Alu -9 302 1 258 323 79 48 chr4 124790782 124790971 -77537376 - L3b LINE CR1 -19 1564 1370 359 331 28 61 chr4 124790994 124791175 -77537172 + MIR SINE MIR 16 190 -72 580 365 148 32 chr4 124791333 124792135 -77536212 - L3 LINE CR1 -352 1225 331 330 404 44 31 chr4 124792245 124792470 -77535877 + L2 LINE L2 2554 2781 -533 216 86 0 0 chr4 124792915 124792950 -77535397 + (CA)n Simple_repeat Simple_repeat 2 36 0 2387 122 8 24 chr4 124792983 124793353 -77534994 + THE1B LTR MaLR 1 364 0 448 318 81 27 chr4 124793990 124794392 -77533955 + MLT1J2 LTR MaLR 1 450 0 215 387 59 10 chr4 124794740 124794944 -77533403 + L2 LINE L2 1061 1274 -2040 197 288 17 17 chr4 124796035 124796094 -77532253 - L2 LINE L2 -5 3267 3209 1208 132 46 14 chr4 124796635 124796854 -77531493 - L1MA5A LINE L1 -35 6262 6037 238 318 8 16 chr4 124797027 124797156 -77531191 - MLT2E LTR ERVL -18 610 483 330 286 16 43 chr4 124797571 124797756 -77530591 + L1M4 LINE L1 2281 2460 -3686 244 186 68 17 chr4 124797784 124797843 -77530504 - LTR67 LTR ERVL -6 551 490 1997 138 0 0 chr4 124798196 124798486 -77529861 + AluSx SINE Alu 1 290 -22 577 129 11 48 chr4 124798488 124798674 -77529673 + (TA)n Simple_repeat Simple_repeat 2 180 0 1713 165 19 50 chr4 124799694 124800015 -77528332 + AluSx SINE Alu 1 311 -1 255 206 43 65 chr4 124800497 124800589 -77527758 + LTR67 LTR ERVL 462 551 -6 343 304 24 24 chr4 124800617 124801014 -77527333 - L1MEd LINE L1 -3686 2443 1993 302 291 113 34 chr4 124801399 124801954 -77526393 - L1MEd LINE L1 -4773 1537 904 229 358 110 42 chr4 124802311 124802506 -77525841 + L2 LINE L2 2144 2324 -990 3877 102 0 5 chr4 124802506 124803067 -77525280 - L1PA13 LINE L1 0 6163 5606 229 358 110 42 chr4 124803067 124803534 -77524813 + L2 LINE L2 2324 2851 -463 230 361 90 8 chr4 124803807 124803929 -77524418 + L2 LINE L2 3136 3267 -5 278 333 124 0 chr4 124806443 124806548 -77521799 + L2 LINE L2 3147 3264 -8 522 254 71 153 chr4 124807722 124808479 -77519868 + L2 LINE L2 1747 2441 -873 215 340 83 21 chr4 124808745 124808889 -77519458 - L2 LINE L2 -6 3307 3155 21 36 0 0 chr4 124809262 124809290 -77519057 + AT_rich Low_complexity Low_complexity 1 28 0 1508 213 30 18 chr4 124809553 124809891 -77518456 + L1MC1 LINE L1 5990 6331 -2 208 309 16 16 chr4 124809917 124810043 -77518304 + (TA)n Simple_repeat Simple_repeat 1 126 0 194 365 109 0 chr4 124810078 124810215 -77518132 - MIR SINE MIR -56 206 55 2332 91 0 0 chr4 124811639 124811948 -77516399 + AluSc SINE Alu 1 309 0 21 0 0 0 chr4 124812273 124812294 -77516053 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr4 124814456 124814490 -77513857 + AT_rich Low_complexity Low_complexity 1 34 0 756 233 29 69 chr4 124816675 124816920 -77511427 - MIR SINE MIR -27 235 1 472 273 47 63 chr4 124817403 124817697 -77510650 - MLT1G LTR MaLR -277 253 1 33 25 0 0 chr4 124819053 124819093 -77509254 + AT_rich Low_complexity Low_complexity 1 40 0 22 56 0 0 chr4 124819334 124819370 -77508977 + AT_rich Low_complexity Low_complexity 1 36 0 700 307 89 23 chr4 124819391 124819833 -77508514 - L2 LINE L2 -81 3232 2763 28 48 0 0 chr4 124820837 124820879 -77507468 + AT_rich Low_complexity Low_complexity 1 42 0 2128 104 0 0 chr4 124820937 124821224 -77507123 - AluSc SINE Alu -22 287 1 679 205 0 0 chr4 124821264 124821391 -77506956 + FLAM_C SINE Alu 1 127 -16 477 279 80 20 chr4 124821878 124822079 -77506268 - MIR SINE MIR -10 252 40 304 177 81 0 chr4 124822713 124822775 -77505572 + L2 LINE L2 3204 3270 -2 21 0 0 0 chr4 124822833 124822854 -77505493 + AT_rich Low_complexity Low_complexity 1 21 0 185 360 118 12 chr4 124822963 124823124 -77505223 - L3 LINE CR1 -53 1524 1347 1160 230 36 97 chr4 124823716 124824108 -77504239 + MLT1A2 LTR MaLR 7 374 0 34 65 0 0 chr4 124824263 124824325 -77504022 + AT_rich Low_complexity Low_complexity 1 62 0 525 342 157 40 chr4 124824385 124824914 -77503433 + MLT2E LTR ERVL 36 626 -2 635 172 16 0 chr4 124825430 124825552 -77502795 - L1MB7 LINE L1 -19 7125 7002 327 277 32 0 chr4 124825558 124825652 -77502695 - L1MB7 LINE L1 -123 7021 6925 766 312 39 4 chr4 124825934 124826165 -77502182 + MLT1H LTR MaLR 81 319 -230 333 266 61 68 chr4 124826254 124826391 -77501956 - L1MB7 LINE L1 -464 6666 6530 2077 127 10 0 chr4 124826391 124826698 -77501649 + AluSx SINE Alu 1 310 -2 333 266 61 68 chr4 124826698 124826853 -77501494 - L1MB7 LINE L1 -600 6530 6376 243 267 0 13 chr4 124827058 124827133 -77501214 + (CATA)n Simple_repeat Simple_repeat 3 76 0 1932 216 28 34 chr4 124827427 124827935 -77500412 - MLT1D LTR MaLR 0 505 1 189 0 0 0 chr4 124828322 124828343 -77500004 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 701 177 102 34 chr4 124828343 124828482 -77499865 - FRAM SINE Alu -163 149 1 29 0 0 0 chr4 124829423 124829452 -77498895 + AT_rich Low_complexity Low_complexity 1 29 0 4860 228 47 45 chr4 124830618 124831490 -77496857 + L1MC3 LINE L1 4722 4450 -1696 2499 46 7 3 chr4 124831490 124831795 -77496552 - AluY SINE Alu -5 306 1 4860 228 47 45 chr4 124831795 124832753 -77495594 + L1MC3 LINE L1 4449 5403 -743 1457 241 27 16 chr4 124832759 124833124 -77495223 - MLT1A2 LTR MaLR -5 369 1 213 267 52 9 chr4 124833144 124833260 -77495087 + (TA)n Simple_repeat Simple_repeat 1 121 0 1485 224 51 28 chr4 124833286 124833718 -77494629 + L1MC3 LINE L1 6603 7044 -741 242 203 40 54 chr4 124834018 124834092 -77494255 + MLT1F1 LTR MaLR 35 107 -460 334 209 0 47 chr4 124834204 124834290 -77494057 - Tigger2 DNA MER2_type -303 2415 2334 10249 201 66 74 chr4 124834346 124836169 -77492178 - L1MB7 LINE L1 -874 6232 4397 2208 115 48 28 chr4 124836169 124836526 -77491821 + THE1B LTR MaLR 1 364 0 10249 201 66 74 chr4 124836526 124837152 -77491195 - L1MB7 LINE L1 -2709 4397 3768 393 75 0 0 chr4 124837152 124837205 -77491142 + (TA)n Simple_repeat Simple_repeat 2 54 0 10249 201 66 74 chr4 124837205 124837613 -77490734 - L1MB7 LINE L1 -3338 3768 3358 331 20 59 0 chr4 124837613 124837664 -77490683 + (TTATA)n Simple_repeat Simple_repeat 2 55 0 10249 201 66 74 chr4 124837664 124837751 -77490596 - L1MB7 LINE L1 -3748 3358 3272 1436 228 10 10 chr4 124837751 124838040 -77490307 + AluJo SINE Alu 4 292 -20 10249 201 66 74 chr4 124838040 124838341 -77490006 - L1MB7 LINE L1 -3834 3272 3003 206 81 27 0 chr4 124838348 124838385 -77489962 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1649 289 52 79 chr4 124838390 124839961 -77488386 - L1MB7 LINE L1 -4916 2190 7 195 162 0 0 chr4 124840121 124840158 -77488189 + (TG)n Simple_repeat Simple_repeat 1 37 0 26 64 0 0 chr4 124840323 124840370 -77487977 + AT_rich Low_complexity Low_complexity 1 47 0 241 323 77 31 chr4 124840620 124840815 -77487532 + MLT1J LTR MaLR 112 315 -196 297 0 0 0 chr4 124841275 124841308 -77487039 + (TG)n Simple_repeat Simple_repeat 2 34 0 760 315 86 19 chr4 124841325 124841953 -77486394 - L1MEc LINE L1 -4612 1784 1115 261 275 55 11 chr4 124842081 124842172 -77486175 + L1MC2 LINE L1 6239 6333 -11 421 376 66 19 chr4 124842871 124843084 -77485263 - MIR SINE MIR -2 260 38 248 200 0 18 chr4 124843182 124843237 -77485110 + LTR65 LTR ERV1 1 54 -615 937 249 105 23 chr4 124843239 124843753 -77484594 + L1ME3A LINE L1 5333 5929 -241 444 221 31 16 chr4 124843777 124843904 -77484443 + L1ME3A LINE L1 6034 6162 -8 22 0 0 0 chr4 124844402 124844424 -77483923 + AT_rich Low_complexity Low_complexity 1 22 0 7571 23 8 1 chr4 124844618 124846021 -77482326 + L1PA3 LINE L1 4747 6155 0 23 54 0 0 chr4 124846021 124846058 -77482289 + AT_rich Low_complexity Low_complexity 1 37 0 383 171 0 14 chr4 124846100 124846170 -77482177 - MER58C DNA MER1_type 0 215 147 1572 185 32 27 chr4 124846175 124846548 -77481799 - THE1C LTR MaLR 0 375 1 9216 137 32 43 chr4 124846548 124848137 -77480210 - THE1C-int LTR MaLR 0 1580 9 1646 169 35 35 chr4 124848154 124848526 -77479821 - THE1C LTR MaLR -1 374 3 409 329 109 7 chr4 124848532 124848669 -77479678 - MER58A DNA MER1_type 0 151 1 21 71 0 0 chr4 124849219 124849261 -77479086 + AT_rich Low_complexity Low_complexity 1 42 0 1434 197 195 54 chr4 124849677 124850215 -77478132 - LTR18B LTR ERVL 0 614 1 987 236 98 46 chr4 124850272 124850750 -77477597 + MLT1D LTR MaLR 1 503 -2 8531 58 4 2 chr4 124850802 124851871 -77476476 - MER11C LTR ERVK 0 1071 1 2288 83 7 7 chr4 124852005 124852305 -77476042 + AluY SINE Alu 1 300 -11 560 175 0 0 chr4 124852405 124852502 -77475845 - MER11C LTR ERVK -974 97 1 1543 186 6 6 chr4 124852636 124852947 -77475400 + AluY SINE Alu 1 311 0 22 80 0 0 chr4 124853126 124853176 -77475171 + AT_rich Low_complexity Low_complexity 1 50 0 14002 159 46 19 chr4 124853261 124854450 -77473897 - Tigger4(Zombi) DNA MER2_type 0 2731 1575 2121 119 0 0 chr4 124854450 124854744 -77473603 + AluSg SINE Alu 1 294 -16 14002 159 46 19 chr4 124854744 124855041 -77473306 - Tigger4(Zombi) DNA MER2_type -1156 1575 1287 1557 113 14 0 chr4 124855041 124855253 -77473094 + AluSx SINE Alu 1 215 -97 14002 159 46 19 chr4 124855253 124856425 -77471922 - Tigger4(Zombi) DNA MER2_type -1444 1287 1 225 30 0 0 chr4 124856503 124856536 -77471811 - L1MA4 LINE L1 -4 6296 6264 1045 191 43 90 chr4 124856592 124857070 -77471277 + MER52A LTR ERV1 758 1350 -405 421 206 22 59 chr4 124857059 124857195 -77471152 + LTR28 LTR ERV1 586 716 -304 * 291 174 81 81 chr4 124857177 124857263 -77471084 + MER52A LTR ERV1 1215 1300 -455 * 15152 137 6 4 chr4 124857268 124859534 -77468813 + MER52-int LTR ERV1 2154 4424 -2667 1707 152 16 58 chr4 124859828 124860204 -77468143 + THE1B LTR MaLR 5 364 0 11303 106 2 7 chr4 124860204 124861635 -77466712 + THE1B-int LTR MaLR 1 1425 -155 5977 78 0 13 chr4 124861635 124862425 -77465922 + LTR17 LTR ERV1 1 780 0 11303 106 2 7 chr4 124862425 124862581 -77465766 + THE1B-int LTR MaLR 1425 1580 0 1811 146 27 46 chr4 124862581 124862952 -77465395 + THE1B LTR MaLR 1 364 0 22 35 0 0 chr4 124863402 124863431 -77464916 + AT_rich Low_complexity Low_complexity 1 29 0 5367 30 0 0 chr4 124863519 124864148 -77464199 - L1PA4 LINE L1 -12 6143 5515 5214 45 1 1 chr4 124864148 124864810 -77463537 + L1P LINE L1 3291 3952 -2194 28 0 0 0 chr4 124864884 124864912 -77463435 + AT_rich Low_complexity Low_complexity 1 28 0 1628 257 116 58 chr4 124865068 124866856 -77461491 - L1ME2 LINE L1 -67 6097 4203 1312 209 54 9 chr4 124866853 124867202 -77461145 + L1MB8 LINE L1 5734 6098 -80 * 30 69 0 0 chr4 124867208 124867266 -77461081 + AT_rich Low_complexity Low_complexity 1 58 0 226 405 9 0 chr4 124867755 124867866 -77460481 - MER5A DNA MER1_type 0 189 78 223 182 0 0 chr4 124868572 124868616 -77459731 + GA-rich Low_complexity Low_complexity 1 44 0 224 133 61 10 chr4 124868839 124868937 -77459410 + (TA)n Simple_repeat Simple_repeat 2 104 0 436 298 156 44 chr4 124869658 124870068 -77458279 + L1MEc LINE L1 30 485 -5911 366 232 21 11 chr4 124870238 124870333 -77458014 - MER58C DNA MER1_type 0 215 120 1420 200 85 21 chr4 124870355 124870730 -77457617 - MLT1C LTR MaLR -2 465 67 1188 226 35 13 chr4 124871449 124871767 -77456580 - L1MC3 LINE L1 0 7785 7461 3121 195 43 3 chr4 124871777 124872381 -77455966 - MER39 LTR ERV1 -5 702 75 898 201 24 5 chr4 124872415 124872624 -77455723 - L1MC3 LINE L1 -340 7445 7233 1247 134 17 22 chr4 124872767 124872998 -77455349 - L1M1 LINE L1 -4838 2727 2498 * 6938 226 47 15 chr4 124872993 124874492 -77453855 - L1M1 LINE L1 -6009 1556 10 25 0 0 0 chr4 124875318 124875343 -77453004 + AT_rich Low_complexity Low_complexity 1 25 0 836 57 45 0 chr4 124876076 124876233 -77452114 + (TTATA)n Simple_repeat Simple_repeat 5 168 0 229 33 49 66 chr4 124876242 124876303 -77452044 + (TA)n Simple_repeat Simple_repeat 2 61 0 748 160 8 15 chr4 124876541 124876672 -77451675 - FLAM_C SINE Alu -3 130 1 503 332 118 37 chr4 124877407 124877859 -77450488 + L1M4 LINE L1 2 503 -6039 195 42 0 0 chr4 124877859 124877883 -77450464 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 503 332 118 37 chr4 124877883 124877948 -77450399 + L1M4 LINE L1 503 561 -5981 183 42 0 0 chr4 124877956 124877980 -77450367 + (TTG)n Simple_repeat Simple_repeat 2 25 0 3522 171 34 20 chr4 124878049 124878752 -77449595 - L1MA5 LINE L1 -108 6192 5480 226 228 0 129 chr4 124879338 124879439 -77448908 + L1M4 LINE L1 611 698 -5844 211 180 0 49 chr4 124879510 124879571 -77448776 + CT-rich Low_complexity Low_complexity 3 60 0 1019 243 20 3 chr4 124879571 124880128 -77448219 + L1M4 LINE L1 820 1569 -5077 * 2763 243 15 20 chr4 124880124 124881016 -77447331 + L1M4 LINE L1 4814 5700 -944 844 346 22 28 chr4 124881022 124881484 -77446863 + L1PA13 LINE L1 2 460 -6327 5724 156 44 52 chr4 124881486 124882607 -77445740 + L1MA2 LINE L1 4109 5237 -1067 2669 81 41 24 chr4 124882607 124882654 -77445693 + L1PA13 LINE L1 5736 5781 -382 252 0 0 0 chr4 124882654 124882682 -77445665 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 387 0 0 0 chr4 124882681 124882724 -77445623 + (CA)n Simple_repeat Simple_repeat 2 44 0 2669 81 41 24 chr4 124882682 124883094 -77445253 + L1PA13 LINE L1 5781 6160 -3 5724 156 44 52 chr4 124883094 124884193 -77444154 + L1MA2 LINE L1 5237 6304 0 22 0 0 0 chr4 124884193 124884215 -77444132 + AT_rich Low_complexity Low_complexity 1 22 0 1963 208 43 64 chr4 124884269 124884828 -77443519 - MLT2B3 LTR ERVL -7 547 1 520 236 50 58 chr4 124887090 124887331 -77441016 + LTR37B LTR ERV1 186 424 -44 218 348 109 36 chr4 124887381 124887602 -77440745 + L3 LINE CR1 1222 1458 -119 22 56 0 0 chr4 124887685 124887721 -77440626 + AT_rich Low_complexity Low_complexity 1 36 0 188 385 23 0 chr4 124887923 124888053 -77440294 + MIR SINE MIR 120 252 -10 1186 223 41 63 chr4 124888342 124888705 -77439642 - MLT1A1 LTR MaLR 0 365 11 25 0 0 0 chr4 124888714 124888739 -77439608 + AT_rich Low_complexity Low_complexity 1 25 0 11425 122 8 6 chr4 124889189 124890664 -77437683 - L1P LINE L1 -1179 4967 3486 8166 51 8 0 chr4 124890664 124891625 -77436722 - LTR5 LTR ERVK 0 969 1 11425 122 8 6 chr4 124891625 124891945 -77436402 - L1P LINE L1 -2660 3486 3168 233 175 0 0 chr4 124891952 124891992 -77436355 - L1P LINE L1 -3154 2992 2953 * 16429 104 9 24 chr4 124891991 124894657 -77433690 + L1P3 LINE L1 2834 5451 -721 33 73 0 0 chr4 124896043 124896111 -77432236 + AT_rich Low_complexity Low_complexity 1 68 0 5312 117 20 17 chr4 124896391 124898299 -77430048 + L1PA13 LINE L1 4267 6157 -6 21 57 0 0 chr4 124898489 124898524 -77429823 + AT_rich Low_complexity Low_complexity 1 35 0 5965 86 1 2 chr4 124898830 124899641 -77428706 - L1PA7 LINE L1 -29 6125 5316 991 138 1 0 chr4 124899636 124899803 -77428544 + L1P LINE L1 5164 5331 -820 * 2274 111 13 24 chr4 124900028 124900407 -77427940 - L1PA13 LINE L1 0 6163 5789 227 344 97 50 chr4 124900583 124900842 -77427505 + L2 LINE L2 3034 3304 -9 21 0 0 0 chr4 124901271 124901292 -77427055 + AT_rich Low_complexity Low_complexity 1 21 0 442 320 91 20 chr4 124901466 124901719 -77426628 + L2 LINE L2 29 299 -3015 1026 323 102 28 chr4 124901719 124902446 -77425901 + L2 LINE L2 2518 3313 0 200 214 0 0 chr4 124902519 124902561 -77425786 + (CATATA)n Simple_repeat Simple_repeat 5 46 0 1286 259 35 6 chr4 124902693 124902867 -77425480 + MER90 LTR ERV1 22 189 -425 2765 132 2 14 chr4 124902867 124903300 -77425047 - MSTA LTR MaLR 0 428 1 1286 259 35 6 chr4 124903300 124903622 -77424725 + MER90 LTR ERV1 189 614 0 27 49 0 0 chr4 124903625 124903666 -77424681 + AT_rich Low_complexity Low_complexity 1 41 0 2349 97 3 7 chr4 124904955 124905265 -77423082 + AluSq SINE Alu 1 309 -4 1655 146 64 7 chr4 124905338 124905618 -77422729 + AluSx SINE Alu 1 296 -16 22 56 0 0 chr4 124907117 124907153 -77421194 + AT_rich Low_complexity Low_complexity 1 36 0 393 361 70 0 chr4 124907779 124907937 -77420410 - MIR SINE MIR 0 262 94 320 0 0 24 chr4 124909295 124909336 -77419011 + (CA)n Simple_repeat Simple_repeat 1 40 0 1205 201 70 73 chr4 124909495 124909879 -77418468 + MLT2C2 LTR ERVL 82 464 0 1841 193 44 0 chr4 124909912 124910296 -77418051 + MER57A LTR ERV1 3 403 0 37 23 0 0 chr4 124910937 124910981 -77417366 + AT_rich Low_complexity Low_complexity 1 44 0 299 250 26 86 chr4 124911174 124911326 -77417021 + MER21B LTR ERV1 22 164 -441 697 250 117 120 chr4 124911331 124911744 -77416603 + MER21B LTR ERV1 101 513 -350 3727 117 56 82 chr4 124911744 124912550 -77415797 - LTR1 LTR ERV1 0 785 1 697 250 117 120 chr4 124912550 124912744 -77415603 + MER21B LTR ERV1 513 706 -157 288 0 0 0 chr4 124913748 124913780 -77414567 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2355 89 0 0 chr4 124913782 124914084 -77414263 + AluY SINE Alu 1 302 -9 282 56 0 0 chr4 124914122 124914158 -77414189 + (A)n Simple_repeat Simple_repeat 1 36 0 2045 121 0 3 chr4 124914716 124915005 -77413342 + AluSc SINE Alu 1 288 -21 27 0 0 0 chr4 124915229 124915256 -77413091 + AT_rich Low_complexity Low_complexity 1 27 0 605 192 55 44 chr4 124915935 124916117 -77412230 + L1MA8 LINE L1 6067 6250 -41 27 29 0 0 chr4 124917433 124917467 -77410880 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr4 124918696 124918717 -77409630 + AT_rich Low_complexity Low_complexity 1 21 0 6107 232 21 6 chr4 124919744 124920659 -77407688 + L1PA15-16 LINE L1 1 900 -5949 759 50 0 0 chr4 124920659 124920759 -77407588 + (TTCC)n Simple_repeat Simple_repeat 3 102 0 1600 185 0 0 chr4 124920759 124921018 -77407329 - AluSx SINE Alu -20 292 34 6107 232 21 6 chr4 124921018 124921733 -77406614 + L1PA15-16 LINE L1 899 1323 -5526 4154 245 15 12 chr4 124921747 124922133 -77406214 + L1P LINE L1 4174 4557 -1589 2364 128 17 3 chr4 124922133 124922492 -77405855 + THE1B LTR MaLR 1 364 0 9295 132 14 60 chr4 124922492 124924148 -77404199 + THE1B-int LTR MaLR 1 1580 0 2213 117 13 45 chr4 124924148 124924524 -77403823 + THE1B LTR MaLR 1 364 0 4154 245 15 12 chr4 124924524 124925280 -77403067 + L1P LINE L1 4556 5321 -825 4635 168 18 16 chr4 124925280 124926662 -77401685 + L1PA16 LINE L1 4742 6128 -38 1798 240 35 65 chr4 124926979 124927549 -77400798 - MLT2B3 LTR ERVL 0 554 2 7146 121 29 4 chr4 124927550 124928622 -77399725 - HERVL-B3 LTR ERVL 0 5654 4556 25 31 0 0 chr4 124928803 124928835 -77399512 + AT_rich Low_complexity Low_complexity 1 32 0 1869 181 11 8 chr4 124928923 124929287 -77399060 - MLT1A1 LTR MaLR 0 365 1 203 133 0 0 chr4 124929565 124929595 -77398752 + (TTCC)n Simple_repeat Simple_repeat 1 30 0 278 301 11 21 chr4 124929820 124929913 -77398434 - L2 LINE L2 0 3313 3222 669 264 11 28 chr4 124930121 124930299 -77398048 - MLT1A1 LTR MaLR -101 264 90 603 331 107 9 chr4 124930312 124930629 -77397718 - L2 LINE L2 -522 2792 2445 22 0 0 0 chr4 124931826 124931848 -77396499 + AT_rich Low_complexity Low_complexity 1 22 0 559 239 0 11 chr4 124931886 124932066 -77396281 + (TA)n Simple_repeat Simple_repeat 1 178 0 25 0 0 0 chr4 124932117 124932142 -77396205 + AT_rich Low_complexity Low_complexity 1 25 0 5172 154 28 32 chr4 124932421 124933452 -77394895 - L1MA6 LINE L1 -4 6296 5270 1188 176 75 0 chr4 124933453 124933692 -77394655 - Tigger2 DNA MER2_type 0 2718 2462 314 267 56 43 chr4 125034015 125034176 -77294171 - MIR SINE MIR -98 164 2 2260 86 0 10 chr4 125034278 125034582 -77293765 + AluY SINE Alu 1 301 -10 21 0 0 0 chr4 125034631 125034652 -77293695 + AT_rich Low_complexity Low_complexity 1 21 0 782 175 39 0 chr4 125034974 125035128 -77293219 + MLT2C2 LTR ERVL 2 161 -303 8852 60 12 5 chr4 125035228 125036425 -77291922 - L1P LINE L1 -2765 3381 2177 3029 75 0 0 chr4 125036423 125036824 -77291523 + L1P LINE L1 1743 2143 -4003 * 5035 185 25 12 chr4 125036836 125037678 -77290669 - L1MA6 LINE L1 -894 5252 4391 459 0 0 0 chr4 125037678 125037729 -77290618 + (TTTTA)n Simple_repeat Simple_repeat 4 54 0 5035 185 25 12 chr4 125037729 125037976 -77290371 - L1MA6 LINE L1 -1755 4391 4149 209 268 0 0 chr4 125038362 125038403 -77289944 + (TG)n Simple_repeat Simple_repeat 1 41 0 647 286 19 5 chr4 125039368 125039574 -77288773 - L1ME LINE L1 -474 5688 5480 188 325 26 0 chr4 125041296 125041373 -77286974 + MIR SINE MIR 64 142 -120 32 0 0 0 chr4 125041399 125041431 -77286916 + AT_rich Low_complexity Low_complexity 1 32 0 1438 216 3 17 chr4 125041465 125041762 -77286585 + AluJo SINE Alu 1 293 -9 253 243 10 10 chr4 125041763 125041866 -77286481 + (TA)n Simple_repeat Simple_repeat 2 104 0 2074 108 0 35 chr4 125042605 125042919 -77285428 - AluSg SINE Alu -7 303 1 1526 44 5 15 chr4 125043689 125043893 -77284454 - AluY SINE Alu -5 306 105 379 308 37 0 chr4 125044325 125044432 -77283915 - L2 LINE L2 0 3313 3203 522 318 95 24 chr4 125044594 125045098 -77283249 - Charlie7 DNA MER1_type -2017 595 56 1561 198 7 0 chr4 125047220 125047508 -77280839 - AluJb SINE Alu -10 302 13 2588 202 26 54 chr4 125048748 125049309 -77279038 + MER92B LTR ERV1 6 548 -88 2357 48 41 0 chr4 125049309 125049604 -77278743 + AluY SINE Alu 1 307 -4 2588 202 26 54 chr4 125049604 125049691 -77278656 + MER92B LTR ERV1 548 636 0 634 298 104 38 chr4 125049800 125050116 -77278231 - L2 LINE L2 -901 2413 2077 1554 233 20 11 chr4 125050241 125050589 -77277758 - MER87 LTR ERV1 -23 518 168 2060 98 3 20 chr4 125051925 125052220 -77276127 + AluY SINE Alu 1 290 -21 180 0 0 0 chr4 125052222 125052242 -77276105 + (CAT)n Simple_repeat Simple_repeat 2 21 0 326 145 0 14 chr4 125052786 125052855 -77275492 + (TA)n Simple_repeat Simple_repeat 2 69 0 6433 164 50 15 chr4 125054012 125056265 -77272082 + L1MA8 LINE L1 3958 6290 -1 247 319 58 16 chr4 125056518 125056706 -77271641 + HAL1 LINE L1 1269 1464 -1043 470 248 72 0 chr4 125057870 125057995 -77270352 + L2 LINE L2 844 977 -2337 775 169 7 7 chr4 125058453 125058589 -77269758 - AluJo SINE Alu -176 136 1 744 285 59 19 chr4 125058951 125059221 -77269126 - HERV16 LTR ERVL -3549 1447 1167 1263 229 106 27 chr4 125059453 125059820 -77268527 - MSTD LTR MaLR 0 396 1 3480 149 29 5 chr4 125060241 125060830 -77267517 + LTR26 LTR ERV1 1 603 0 483 306 101 24 chr4 125061389 125061637 -77266710 + MLT1L LTR MaLR 349 615 0 1641 146 149 16 chr4 125062106 125062427 -77265920 + THE1B LTR MaLR 1 364 0 11079 109 19 2 chr4 125062427 125063981 -77264366 + THE1B-int LTR MaLR 1 1580 0 1835 157 71 40 chr4 125063984 125064334 -77264013 + THE1B LTR MaLR 4 364 0 256 254 0 0 chr4 125064414 125064469 -77263878 + GA-rich Low_complexity Low_complexity 1 55 0 1289 154 45 0 chr4 125064673 125064919 -77263428 - L1MA7 LINE L1 -4 6287 6031 282 281 37 24 chr4 125064927 125065009 -77263338 + L1MA9 LINE L1 278 360 -6293 260 196 65 0 chr4 125065080 125065126 -77263221 + L1MA9 LINE L1 287 335 -6318 28 0 0 0 chr4 125066071 125066099 -77262248 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr4 125066242 125066275 -77262072 + AT_rich Low_complexity Low_complexity 1 33 0 302 306 8 65 chr4 125066293 125066417 -77261930 + MIR3 SINE MIR 89 205 -3 714 247 60 0 chr4 125067601 125067852 -77260495 - L1MCa LINE L1 -5014 1412 1147 549 221 22 7 chr4 125067842 125067978 -77260369 - L1MCa LINE L1 -6270 156 19 * 1847 262 38 7 chr4 125068221 125068808 -77259539 + L1MA9 LINE L1 2967 3571 -3161 3768 188 40 6 chr4 125068827 125070424 -77257923 + L1MA9 LINE L1 5114 6898 0 2138 80 3 0 chr4 125070853 125071139 -77257208 - L1PA6 LINE L1 -2 6152 5866 2185 128 0 0 chr4 125072449 125072746 -77255601 + AluSx SINE Alu 1 297 -15 1452 198 12 39 chr4 125073173 125073506 -77254841 + MLT1A1 LTR MaLR 26 349 -16 3098 248 59 82 chr4 125073526 125073746 -77254601 + MLT1A1-int LTR MaLR 5 229 -1142 1351 187 62 28 chr4 125073746 125074035 -77254312 + AluJb SINE Alu 1 299 -13 3098 248 59 82 chr4 125074035 125074362 -77253985 + MLT1A1-int LTR MaLR 229 562 -809 234 62 0 0 chr4 125074362 125074394 -77253953 + (CA)n Simple_repeat Simple_repeat 2 33 0 3098 248 59 82 chr4 125074394 125075242 -77253105 + MLT1A1-int LTR MaLR 562 1369 -2 1576 215 19 33 chr4 125075244 125075612 -77252735 + MLT1A1 LTR MaLR 1 363 -2 22 35 0 0 chr4 125077160 125077189 -77251158 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr4 125078294 125078321 -77250026 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr4 125078551 125078576 -77249771 + AT_rich Low_complexity Low_complexity 1 25 0 364 284 46 52 chr4 125079543 125079737 -77248610 + L2 LINE L2 3118 3310 -3 1639 167 58 19 chr4 125079807 125080166 -77248181 - THE1C LTR MaLR 0 375 3 21 0 0 0 chr4 125080582 125080603 -77247744 + AT_rich Low_complexity Low_complexity 1 21 0 1803 146 28 17 chr4 125080611 125080642 -77247705 - L1MA3 LINE L1 0 6305 6276 432 0 0 0 chr4 125080642 125080690 -77247657 + (TA)n Simple_repeat Simple_repeat 2 49 0 1803 146 28 17 chr4 125080690 125081014 -77247333 - L1MA3 LINE L1 -29 6276 5946 24 0 0 0 chr4 125081341 125081365 -77246982 + AT_rich Low_complexity Low_complexity 1 24 0 1729 168 122 9 chr4 125081378 125081706 -77246641 - MLT1A1 LTR MaLR 0 365 1 4554 243 48 35 chr4 125082552 125086919 -77241428 - L1PA16 LINE L1 -4 7600 2464 2649 124 2 7 chr4 125086919 125087323 -77241024 + L1PA11 LINE L1 5773 6174 0 4554 243 48 35 chr4 125087323 125089811 -77238536 - L1PA16 LINE L1 -5140 2464 8 1154 206 34 23 chr4 125090024 125090477 -77237870 - MLT1D LTR MaLR 0 505 1 267 285 65 80 chr4 125092067 125092267 -77236080 - MIR SINE MIR -45 217 21 727 189 69 23 chr4 125092346 125092521 -77235826 + L1MA7 LINE L1 5957 6139 -152 9429 35 0 0 chr4 125092543 125094456 -77233891 - L1PA3 LINE L1 -1 6154 4241 245 30 0 0 chr4 125094556 125094589 -77233758 - L1PA3 LINE L1 -1825 4321 4289 8144 29 0 1 chr4 125094590 125096335 -77232012 + L1PA4 LINE L1 4400 6152 -3 3050 58 0 0 chr4 125096349 125096731 -77231616 + L1PA5 LINE L1 5770 6151 -3 730 236 93 112 chr4 125096738 125097157 -77231190 + MER67D LTR ERV1 104 514 0 23 33 0 0 chr4 125098549 125098579 -77229768 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 125098813 125098835 -77229512 + AT_rich Low_complexity Low_complexity 1 22 0 2307 189 44 16 chr4 125099067 125099821 -77228526 + L1M4 LINE L1 4999 5777 -401 1352 132 10 15 chr4 125100346 125100551 -77227796 - AluSg/x SINE Alu -20 289 86 7575 99 2 7 chr4 125100551 125101636 -77226711 + HERVH LTR ERV1 1908 2987 -4726 5684 115 2 3 chr4 125101630 125102485 -77225862 + HERVH LTR ERV1 3140 3993 -3720 * 3117 122 0 2 chr4 125102487 125103102 -77225245 + HERVH LTR ERV1 4488 5149 -2564 1448 107 0 0 chr4 125103132 125103337 -77225010 + HERVH LTR ERV1 5615 5819 -1894 2260 112 50 13 chr4 125103337 125103713 -77224634 + HERVH LTR ERV1 7324 7713 0 3105 72 25 22 chr4 125103713 125104160 -77224187 + LTR7 LTR ERV1 1 448 -2 3117 94 2 20 chr4 125104561 125105017 -77223330 + LTR7 LTR ERV1 1 448 -2 2133 188 10 0 chr4 125106802 125107201 -77221146 + MER57A LTR ERV1 1 403 0 7985 146 20 6 chr4 125107201 125108451 -77219896 + MER57A-int LTR ERV1 1 1268 -6269 * 26555 122 28 21 chr4 125108430 125113749 -77214598 + MER57A-int LTR ERV1 1073 7148 -389 1762 88 134 8 chr4 125113754 125114093 -77214254 + MER57A-int LTR ERV1 10 7537 0 2477 137 20 0 chr4 125114093 125114488 -77213859 + MER57A LTR ERV1 1 403 0 24 0 0 0 chr4 125115649 125115673 -77212674 + AT_rich Low_complexity Low_complexity 1 24 0 243 61 0 0 chr4 125116144 125116177 -77212170 + (CA)n Simple_repeat Simple_repeat 1 33 0 438 360 115 47 chr4 125116193 125116795 -77211552 + L1MEd LINE L1 81 723 -5396 344 273 35 35 chr4 125116880 125117023 -77211324 + L1MEd LINE L1 12 154 -5965 1929 259 84 42 chr4 125117310 125118328 -77210019 - L1ME3 LINE L1 -5 6157 5088 276 264 33 80 chr4 125118340 125118552 -77209795 + L1MCc LINE L1 77 278 -6145 1355 225 129 24 chr4 125119501 125119919 -77208428 + MLT1C LTR MaLR 6 467 0 2167 84 0 11 chr4 125120065 125120384 -77207963 - AluY SINE Alu 0 316 1 214 254 131 49 chr4 125121304 125121409 -77206938 - MIR SINE MIR -2 260 142 2281 140 11 19 chr4 125121409 125121787 -77206560 + THE1C LTR MaLR 1 375 0 214 254 131 49 chr4 125121787 125121803 -77206544 - MIR SINE MIR -120 142 129 815 235 134 52 chr4 125121957 125122399 -77205948 + MLT1D LTR MaLR 1 567 0 246 345 49 28 chr4 125123004 125123146 -77205201 + L2 LINE L2 2676 2820 -494 1608 278 59 35 chr4 125123178 125124735 -77203612 - L1ME2 LINE L1 -9 6155 4565 236 125 0 0 chr4 125124753 125124801 -77203546 - L1ME2 LINE L1 -1678 4468 4421 1909 189 45 3 chr4 125125393 125125773 -77202574 - MSTD LTR MaLR 0 396 1 387 360 30 40 chr4 125126339 125126637 -77201710 - L2 LINE L2 -288 3025 2729 460 343 20 0 chr4 125126797 125126943 -77201404 - MLT1I LTR MaLR -137 272 124 337 375 0 13 chr4 125127476 125127628 -77200719 + MLT1J LTR MaLR 68 217 -294 240 59 0 0 chr4 125130643 125130677 -77197670 + (CA)n Simple_repeat Simple_repeat 2 35 0 1119 126 0 0 chr4 125130706 125130865 -77197482 - AluSg/x SINE Alu -26 286 128 21 0 0 0 chr4 125130933 125130954 -77197393 + AT_rich Low_complexity Low_complexity 1 21 0 407 355 9 16 chr4 125131063 125131282 -77197065 + CT-rich Low_complexity Low_complexity 1 217 0 274 331 30 23 chr4 125134965 125135098 -77193249 + HERVL LTR ERVL 2394 2527 -3127 30 27 0 0 chr4 125136234 125136271 -77192076 + AT_rich Low_complexity Low_complexity 1 37 0 186 143 0 0 chr4 125137209 125137244 -77191103 + (CATATA)n Simple_repeat Simple_repeat 5 39 0 1873 127 14 0 chr4 125137594 125137869 -77190478 + AluSx SINE Alu 16 294 -18 21 36 0 0 chr4 125138516 125138544 -77189803 + AT_rich Low_complexity Low_complexity 1 28 0 33 46 0 15 chr4 125138736 125138751 -77189596 + AT_rich Low_complexity Low_complexity 1 15 -49 1852 147 41 0 chr4 125138751 125139091 -77189256 + L1MB1 LINE L1 5815 6168 0 33 46 0 15 chr4 125139091 125139140 -77189207 + AT_rich Low_complexity Low_complexity 15 64 0 25 0 0 0 chr4 125139183 125139208 -77189139 + AT_rich Low_complexity Low_complexity 1 25 0 2032 154 0 0 chr4 125139257 125139568 -77188779 - AluSx SINE Alu 0 312 2 1928 75 6 117 chr4 125139660 125140019 -77188328 + L1PB2 LINE L1 5831 6149 -2 1747 194 81 0 chr4 125141721 125142067 -77186280 - MLT2C2 LTR ERVL -89 375 2 21 0 0 0 chr4 125142389 125142410 -77185937 + AT_rich Low_complexity Low_complexity 1 21 0 2251 86 0 10 chr4 125142459 125142762 -77185585 - AluY SINE Alu -11 300 1 314 267 56 43 chr4 125142864 125143025 -77185322 + MIR SINE MIR 2 164 -98 1029 345 114 17 chr4 125143265 125144148 -77184199 - L3 LINE CR1 -338 1239 271 615 221 0 8 chr4 125144357 125144484 -77183863 - FLAM_A SINE Alu -7 126 1 944 233 181 92 chr4 125145742 125146244 -77182103 - MER77 LTR ERV1 -6 599 53 610 338 21 84 chr4 125146658 125146976 -77181371 + L2 LINE L2 2818 3092 -221 2357 56 0 0 chr4 125146976 125147262 -77181085 - AluY SINE Alu -25 286 1 610 338 21 84 chr4 125147262 125147466 -77180881 + L2 LINE L2 3092 3307 -6 313 364 53 7 chr4 125147657 125147808 -77180539 + MIR SINE MIR 23 180 -82 294 329 117 22 chr4 125149843 125150117 -77178230 + L2 LINE L2 1940 2239 -1075 200 330 43 11 chr4 125151273 125151367 -77176980 + L2 LINE L2 1314 1410 -1904 261 0 0 0 chr4 125151694 125151723 -77176624 + (TG)n Simple_repeat Simple_repeat 1 29 0 302 67 22 0 chr4 125151723 125151768 -77176579 + (GA)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chr4 125151933 125151956 -77176391 + AT_rich Low_complexity Low_complexity 1 23 0 397 217 11 43 chr4 125152832 125152924 -77175423 - MLT2E LTR ERVL -508 120 32 198 143 0 0 chr4 125153499 125153534 -77174813 + (TG)n Simple_repeat Simple_repeat 2 36 0 209 302 0 0 chr4 125153535 125153598 -77174749 + (TA)n Simple_repeat Simple_repeat 1 63 0 339 304 77 18 chr4 125154773 125154993 -77173354 - L1MEc LINE L1 -3783 2599 2367 309 299 58 35 chr4 125155327 125155501 -77172846 - L1MEc LINE L1 -4579 1984 1807 277 298 117 11 chr4 125155606 125155700 -77172647 - MER115 DNA AcHobo -253 440 337 509 304 14 0 chr4 125155944 125156161 -77172186 - L1MEc LINE L1 -4913 1650 1431 838 337 45 30 chr4 125156171 125156575 -77171772 - L2 LINE L2 -18 3295 2886 1063 123 0 0 chr4 125156983 125157138 -77171209 - L1P LINE L1 -5734 412 258 361 249 79 44 chr4 125157158 125157475 -77170872 - L1M4 LINE L1 -4040 2344 2017 236 388 94 18 chr4 125158101 125158325 -77170022 + L2 LINE L2 2178 2418 -896 4063 207 25 6 chr4 125158432 125159337 -77169010 - L1MB8 LINE L1 -2 6176 5254 1342 191 10 37 chr4 125159341 125159635 -77168712 + LTR55 LTR ERV 1 286 -262 381 182 23 11 chr4 125159699 125159787 -77168560 + LTR55 LTR ERV 454 542 -6 1415 199 33 3 chr4 125159796 125160133 -77168214 - L1MB8 LINE L1 -897 5249 4903 21 82 0 0 chr4 125160327 125160376 -77167971 + AT_rich Low_complexity Low_complexity 1 49 0 229 43 0 101 chr4 125160435 125160504 -77167843 + (TTTTTA)n Simple_repeat Simple_repeat 1 62 0 272 287 47 54 chr4 125160714 125160843 -77167504 + L2 LINE L2 3178 3305 -8 1602 236 99 15 chr4 125162810 125163403 -77164944 + L1ME1 LINE L1 5188 5839 -327 198 71 0 0 chr4 125163581 125163609 -77164738 + (TA)n Simple_repeat Simple_repeat 2 29 0 183 139 0 0 chr4 125163679 125163715 -77164632 + (TATATG)n Simple_repeat Simple_repeat 5 40 0 471 259 4 105 chr4 125164047 125164286 -77164061 - MER58C DNA MER1_type 0 215 1 2355 167 41 5 chr4 125164482 125164895 -77163452 - MSTA LTR MaLR 0 428 1 19355 64 8 8 chr4 125165762 125168417 -77159930 + L1P LINE L1 2203 4832 -1314 2930 218 74 1 chr4 125168413 125169114 -77159233 + L1PB4 LINE L1 5405 6156 0 * 737 230 70 120 chr4 125169157 125169574 -77158773 - MSTD LTR MaLR 0 396 1 25 90 0 0 chr4 125171369 125171436 -77156911 + AT_rich Low_complexity Low_complexity 1 67 0 22 0 0 0 chr4 125171457 125171479 -77156868 + AT_rich Low_complexity Low_complexity 1 22 0 398 267 57 0 chr4 125172416 125172521 -77155826 - MIR SINE MIR -148 114 4 23 33 0 0 chr4 125173419 125173449 -77154898 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 125174022 125174043 -77154304 + AT_rich Low_complexity Low_complexity 1 21 0 739 249 67 0 chr4 125174056 125174249 -77154098 - MER3 DNA MER1_type 0 209 4 180 0 0 0 chr4 125174938 125174958 -77153389 + (TTTTTA)n Simple_repeat Simple_repeat 1 20 0 1623 197 86 83 chr4 125175009 125175441 -77152906 + MER67D LTR ERV1 1 433 -81 2099 213 24 32 chr4 125175490 125175997 -77152350 - MLT1D LTR MaLR -2 503 1 369 205 141 54 chr4 125175999 125176122 -77152225 - MER20B DNA MER1_type -61 722 576 1938 198 3 6 chr4 125176122 125176486 -77151861 + MER47A DNA MER2_type 1 363 -3 369 205 141 54 chr4 125176486 125176547 -77151800 - MER20B DNA MER1_type -207 576 522 977 329 69 8 chr4 125176684 125177161 -77151186 - MER20B DNA MER1_type -274 509 4 414 0 0 0 chr4 125177345 125177391 -77150956 + (TG)n Simple_repeat Simple_repeat 1 46 0 193 245 20 0 chr4 125177467 125177516 -77150831 - L2 LINE L2 0 3313 3264 363 321 48 80 chr4 125177587 125177923 -77150424 - L2 LINE L2 -558 2756 2432 2150 107 0 3 chr4 125178902 125179202 -77149145 + AluSq SINE Alu 1 299 -14 216 0 0 0 chr4 125179242 125179266 -77149081 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2071 115 7 7 chr4 125179928 125180223 -77148124 - AluSx SINE Alu -16 296 2 371 331 19 7 chr4 125181825 125181979 -77146368 + MIR SINE MIR 81 236 -26 21 0 0 0 chr4 125181979 125182000 -77146347 + AT_rich Low_complexity Low_complexity 1 21 0 2608 33 0 0 chr4 125182078 125182381 -77145966 - AluY SINE Alu -8 303 1 5232 118 24 4 chr4 125182626 125183584 -77144763 - L1PA13 LINE L1 -119 6044 5073 4785 225 24 51 chr4 125183566 125185086 -77143261 - L1M3c LINE L1 -2211 5354 3877 * 192 77 0 0 chr4 125185092 125185118 -77143229 + (CA)n Simple_repeat Simple_repeat 2 27 0 302 294 0 22 chr4 125185127 125185219 -77143128 - L1MC4 LINE L1 -1339 6703 6614 492 167 17 36 chr4 125185241 125185578 -77142769 + (TA)n Simple_repeat Simple_repeat 1 330 0 2623 259 59 41 chr4 125185600 125187169 -77141178 - L1 LINE L1 -3705 3860 2259 885 271 45 60 chr4 125187169 125187351 -77140996 - L1M3c LINE L1 -4794 2702 2519 1985 142 3 0 chr4 125187351 125187646 -77140701 - AluSq SINE Alu -17 296 1 885 271 45 60 chr4 125187646 125188133 -77140214 - L1M3c LINE L1 -4977 2519 2020 581 164 18 27 chr4 125189528 125189638 -77138709 + MER67D LTR ERV1 3 111 -403 707 22 0 0 chr4 125189644 125189734 -77138613 - L1PA4 LINE L1 -1768 4378 4289 8150 32 6 1 chr4 125189735 125191360 -77136987 + L1PA4 LINE L1 4400 6032 -123 219 114 0 0 chr4 125191480 125191515 -77136832 + (TG)n Simple_repeat Simple_repeat 2 36 0 237 165 22 99 chr4 125192618 125192709 -77135638 - L1ME4a LINE L1 -109 6012 5929 8591 43 1 1 chr4 125194224 125195305 -77133042 + L1P LINE L1 2033 3113 -3033 12784 34 0 1 chr4 125195405 125196980 -77131367 - L1P LINE L1 -2024 4122 2549 11795 49 1 0 chr4 125196978 125198470 -77129877 + L1P LINE L1 1046 2538 -3608 * 857 137 24 24 chr4 125198470 125198636 -77129711 + L1MA8 LINE L1 6121 6288 -3 288 230 46 11 chr4 125198763 125198850 -77129497 + MIR SINE MIR 123 212 -50 214 250 0 0 chr4 125198896 125198940 -77129407 + L2 LINE L2 3265 3308 -5 1778 263 72 20 chr4 125200236 125201442 -77126905 - L1ME1 LINE L1 -63 6103 4780 745 258 95 52 chr4 125201487 125202087 -77126260 + L1MEc LINE L1 757 1382 -5014 706 254 32 40 chr4 125202101 125202131 -77126216 + L1MEc LINE L1 1619 1648 -4748 1831 148 3 0 chr4 125202131 125202446 -77125901 - AluSx SINE Alu 0 316 1 706 254 32 40 chr4 125202446 125202662 -77125685 + L1MEc LINE L1 1648 1864 -4532 1265 233 55 14 chr4 125202670 125202962 -77125385 - MLT1F1 LTR MaLR -263 304 1 22 0 0 0 chr4 125202986 125203008 -77125339 + AT_rich Low_complexity Low_complexity 1 22 0 432 261 10 121 chr4 125203354 125203561 -77124786 + MIR SINE MIR 21 204 -58 335 274 0 0 chr4 125203563 125203665 -77124682 + (TA)n Simple_repeat Simple_repeat 1 102 0 245 313 104 0 chr4 125203785 125203919 -77124428 + MLT1K LTR MaLR 441 588 0 366 61 0 0 chr4 125204504 125204553 -77123794 + (TTA)n Simple_repeat Simple_repeat 3 51 0 30357 33 3 0 chr4 125204553 125209011 -77119336 - L1PA3 LINE L1 -18 6137 1665 258 294 94 39 chr4 125210850 125211030 -77117317 - L3b LINE CR1 -106 1477 1288 516 272 161 9 chr4 125211511 125211728 -77116619 - MIR SINE MIR -2 260 11 24 53 0 0 chr4 125212390 125212428 -77115919 + AT_rich Low_complexity Low_complexity 1 38 0 1989 95 18 4 chr4 125212934 125213208 -77115139 + AluSq SINE Alu 1 278 -35 189 0 0 0 chr4 125213212 125213233 -77115114 + (CAA)n Simple_repeat Simple_repeat 1 21 0 310 267 29 9 chr4 125213486 125213591 -77114756 + HAL1b LINE L1 546 652 -696 628 301 65 13 chr4 125214031 125214260 -77114087 + L1MC4 LINE L1 6736 6976 -1066 558 234 97 19 chr4 125214293 125214550 -77113797 + L1MC5 LINE L1 6963 7239 -722 381 273 58 58 chr4 125214749 125214954 -77113393 + L1ME3A LINE L1 5966 6170 0 2353 125 28 17 chr4 125215973 125216333 -77112014 + THE1B LTR MaLR 1 364 0 9292 102 117 1 chr4 125216333 125217748 -77110599 + THE1B-int LTR MaLR 1 1580 0 1774 153 37 17 chr4 125217748 125218048 -77110299 + THE1B LTR MaLR 1 306 -58 33902 52 2 1 chr4 125218049 125223163 -77105184 - L1PA5 LINE L1 -8 6146 29 452 186 82 10 chr4 125223163 125223260 -77105087 + THE1B LTR MaLR 261 364 0 207 303 158 18 chr4 125224527 125224692 -77103655 - L3 LINE CR1 -856 721 534 540 335 23 9 chr4 125225791 125226006 -77102341 + L3b LINE CR1 1153 1370 -213 579 254 22 7 chr4 125226333 125226471 -77101876 + MIR SINE MIR 3 142 -120 24 53 0 0 chr4 125227453 125227491 -77100856 + AT_rich Low_complexity Low_complexity 1 38 0 204 40 0 0 chr4 125227935 125227960 -77100387 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1790 287 166 24 chr4 125229073 125229902 -77098445 + L1PBa LINE L1 24 970 -5893 404 335 55 38 chr4 125230278 125230628 -77097719 + L1PBa LINE L1 845 1576 -5286 390 250 43 0 chr4 125230630 125230722 -77097625 + L1PBa LINE L1 1487 1582 -5280 * 11516 229 21 44 chr4 125230702 125234762 -77093585 + L1PB4 LINE L1 1349 5502 -1370 1966 111 33 3 chr4 125234762 125235069 -77093278 - L1PB1 LINE L1 -1 6150 5835 11516 229 21 44 chr4 125235069 125236218 -77092129 + L1PB4 LINE L1 5502 6500 -372 396 40 0 0 chr4 125236218 125236268 -77092079 + (TG)n Simple_repeat Simple_repeat 2 51 0 11516 229 21 44 chr4 125236268 125236631 -77091716 + L1PB4 LINE L1 6500 6870 -2 294 265 66 20 chr4 125237962 125238113 -77090234 + HERVL LTR ERVL 2401 2558 -3096 2147 347 59 26 chr4 125238119 125239645 -77088702 + HERVL LTR ERVL 2761 4337 -1427 410 321 38 11 chr4 125239775 125239959 -77088388 + HERVL LTR ERVL 4753 4941 -823 235 130 0 0 chr4 125239977 125240023 -77088324 + LTR66 LTR ERVL 394 439 -171 231 61 0 0 chr4 125240035 125240068 -77088279 + (CA)n Simple_repeat Simple_repeat 2 34 0 186 43 0 0 chr4 125240068 125240091 -77088256 + (GA)n Simple_repeat Simple_repeat 1 23 0 1755 131 4 18 chr4 125240096 125240370 -77087977 - AluSg SINE Alu -40 270 1 3687 121 22 3 chr4 125240622 125241211 -77087136 + L1MA3 LINE L1 5705 6304 -1 238 245 82 0 chr4 125241607 125241705 -77086642 + L1ME LINE L1 5718 5823 -298 26 30 0 0 chr4 125244696 125244729 -77083618 + AT_rich Low_complexity Low_complexity 1 33 0 222 298 36 24 chr4 125244869 125244953 -77083394 - L2 LINE L2 0 3272 3188 216 0 0 0 chr4 125245057 125245081 -77083266 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 272 317 58 19 chr4 125245136 125245240 -77083107 + MIR SINE MIR 36 143 -65 22 0 0 0 chr4 125245419 125245441 -77082906 + AT_rich Low_complexity Low_complexity 1 22 0 213 203 17 34 chr4 125245522 125245581 -77082766 - MIR SINE MIR -38 224 167 257 196 0 0 chr4 125245825 125245871 -77082476 - L1MC5 LINE L1 -171 7790 7745 236 155 29 87 chr4 125245880 125245983 -77082364 - L1MC5 LINE L1 -279 7682 7586 324 338 49 21 chr4 125246584 125246726 -77081621 + MIR SINE MIR 15 160 -102 288 347 95 27 chr4 125246751 125246898 -77081449 + MIR SINE MIR 5 161 -101 7808 176 59 7 chr4 125248940 125250855 -77077492 - L1M1 LINE L1 -685 7039 5037 * 14330 170 37 13 chr4 125250849 125253401 -77074946 - L1M1 LINE L1 -4944 2621 9 42 57 0 0 chr4 125253405 125253475 -77074872 + AT_rich Low_complexity Low_complexity 1 70 0 1703 189 252 173 chr4 125254115 125255061 -77073286 - LTR1B LTR ERV1 0 1020 1 181 258 225 39 chr4 125255540 125255718 -77072629 + L2 LINE L2 2205 2415 -899 457 171 136 0 chr4 125256489 125256577 -77071770 + FRAM SINE Alu 46 145 -31 27 29 0 0 chr4 125257245 125257279 -77071068 + AT_rich Low_complexity Low_complexity 1 34 0 2135 122 0 0 chr4 125257775 125258078 -77070269 - AluSx SINE Alu -9 303 1 23 54 0 0 chr4 125258525 125258562 -77069785 + AT_rich Low_complexity Low_complexity 1 37 0 751 268 196 20 chr4 125259808 125260114 -77068233 + L2 LINE L2 2950 3309 -4 26 50 0 0 chr4 125260172 125260212 -77068135 + AT_rich Low_complexity Low_complexity 1 40 0 222 62 0 0 chr4 125260289 125260321 -77068026 + (TG)n Simple_repeat Simple_repeat 2 33 0 1788 184 70 31 chr4 125260487 125260900 -77067447 - L1MD3 LINE L1 -6 7989 7561 24 0 0 0 chr4 125261070 125261094 -77067253 + AT_rich Low_complexity Low_complexity 1 24 0 4384 165 48 5 chr4 125261626 125262397 -77065950 + MER6 DNA MER2_type 32 835 -30 25 0 0 0 chr4 125262629 125262654 -77065693 + AT_rich Low_complexity Low_complexity 1 25 0 831 250 117 11 chr4 125263578 125263842 -77064505 + LTR33A LTR ERVL 230 521 -2 1787 103 46 0 chr4 125263908 125264170 -77064177 - AluSq SINE Alu -39 274 1 22 0 0 0 chr4 125264183 125264205 -77064142 + AT_rich Low_complexity Low_complexity 1 22 0 1455 252 100 34 chr4 125265096 125265583 -77062764 + MER69 DNA AcHobo 1859 2395 -131 2337 62 0 0 chr4 125265583 125265889 -77062458 - L1PA7 LINE L1 -6 6148 5843 1455 252 100 34 chr4 125265889 125266012 -77062335 + MER69 DNA AcHobo 2395 2509 -17 6480 208 32 30 chr4 125268293 125269901 -77058446 - L1 LINE L1 -1003 5845 4234 884 116 187 0 chr4 125269901 125270056 -77058291 - MSTA LTR MaLR -244 184 1 8137 183 50 3 chr4 125270056 125271633 -77056714 - MSTA-int LTR MaLR 0 1651 1 1235 153 309 14 chr4 125271757 125272052 -77056295 - MSTA LTR MaLR -46 382 1 974 208 53 16 chr4 125272054 125272357 -77055990 - L1 LINE L1 -2875 3973 3660 1964 286 7 0 chr4 125272458 125272919 -77055428 - L1 LINE L1 -5467 1382 919 225 158 0 0 chr4 125272924 125272962 -77055385 - L1 LINE L1 -6811 38 1 262 204 54 32 chr4 125273096 125273189 -77055158 + (TATATG)n Simple_repeat Simple_repeat 2 96 0 26 50 0 0 chr4 125274018 125274058 -77054289 + AT_rich Low_complexity Low_complexity 1 40 0 306 273 62 53 chr4 125274854 125275063 -77053284 - L1MC5 LINE L1 -741 7220 7010 315 179 0 0 chr4 125275150 125275217 -77053130 + (CA)n Simple_repeat Simple_repeat 2 68 0 664 304 117 0 chr4 125275223 125275480 -77052867 - L1MC4 LINE L1 -1053 6989 6703 33 80 0 0 chr4 125275589 125275664 -77052683 + AT_rich Low_complexity Low_complexity 1 75 0 1659 96 96 63 chr4 125275992 125276295 -77052052 - AluSp SINE Alu 0 313 1 467 329 50 0 chr4 125276369 125276646 -77051701 - L1MC4 LINE L1 -1903 5905 5615 590 271 110 15 chr4 125276678 125276951 -77051396 - L1MC4 LINE L1 -2256 5552 5254 3372 104 13 79 chr4 125277041 125277638 -77050709 - L1PA11 LINE L1 0 6174 5617 21556 202 23 20 chr4 125277638 125281467 -77046880 - L1P4 LINE L1 -508 7104 2187 2054 125 0 52 chr4 125281467 125281795 -77046552 - AluSp SINE Alu -2 311 1 21556 202 23 20 chr4 125281795 125283989 -77044358 - L1P4 LINE L1 -5425 2187 1 34 42 0 0 chr4 125284033 125284081 -77044266 + AT_rich Low_complexity Low_complexity 1 48 0 902 178 0 11 chr4 125284081 125284266 -77044081 - L1PA16 LINE L1 -1280 4866 4684 * 4782 177 44 9 chr4 125284264 125285507 -77042840 + L1PA16 LINE L1 4881 6164 -2 2370 134 29 71 chr4 125285781 125286260 -77042087 - L1MA4 LINE L1 -449 5851 5393 1068 157 258 69 chr4 125286260 125286624 -77041723 + L1MA4 LINE L1 5857 6289 -11 342 167 26 13 chr4 125286664 125286742 -77041605 - MER53 DNA DNA -88 101 23 * 401 167 26 0 chr4 125286672 125286750 -77041597 + MER53 DNA DNA 106 185 -4 2106 122 0 22 chr4 125286880 125287199 -77041148 - AluSx SINE Alu 0 312 1 789 323 76 38 chr4 125287205 125287840 -77040507 - L1M4 LINE L1 -1310 4836 4178 282 247 55 0 chr4 125288205 125288278 -77040069 + MLT1H LTR MaLR 457 533 -16 421 194 51 10 chr4 125288427 125288525 -77039822 + MER82 DNA MER2_type 94 195 -458 307 56 37 0 chr4 125288525 125288579 -77039768 + (TA)n Simple_repeat Simple_repeat 2 57 0 2198 203 46 9 chr4 125289118 125289552 -77038795 + MER82 DNA MER2_type 203 652 -1 223 232 18 18 chr4 125289674 125289730 -77038617 - L2 LINE L2 -70 3243 3188 2069 264 104 39 chr4 125290248 125291248 -77037099 - L1MEc LINE L1 -1225 4990 3874 1412 273 102 42 chr4 125291262 125291528 -77036819 - L1MEc LINE L1 -5712 684 435 1863 41 0 0 chr4 125291528 125291747 -77036600 + AluY SINE Alu 86 304 -7 1412 273 102 42 chr4 125291747 125292118 -77036229 - L1MEc LINE L1 -5961 435 9 2289 117 6 0 chr4 125293031 125293357 -77034990 + MER39B LTR ERV1 296 623 -30 24 0 0 0 chr4 125294375 125294399 -77033948 + AT_rich Low_complexity Low_complexity 1 24 0 687 128 18 0 chr4 125294663 125294772 -77033575 + MER39B LTR ERV1 513 623 -30 543 277 11 34 chr4 125295924 125296101 -77032246 - MER5B DNA MER1_type 0 178 6 1272 231 32 31 chr4 125296414 125296782 -77031565 - MLT1E3 LTR MaLR 0 624 209 752 291 4 21 chr4 125298455 125298696 -77029651 + MIR SINE MIR 26 262 0 1864 124 71 0 chr4 125298706 125298972 -77029375 - AluSq SINE Alu -28 285 1 325 326 91 17 chr4 125299013 125299188 -77029159 - MIR SINE MIR -44 218 31 522 365 72 36 chr4 125299848 125300538 -77027809 - L2 LINE L2 -826 2488 1774 330 119 0 68 chr4 125300939 125301057 -77027290 + (TA)n Simple_repeat Simple_repeat 2 111 0 223 276 52 0 chr4 125301113 125301171 -77027176 + MIR SINE MIR 85 145 -63 8361 194 27 22 chr4 125301856 125304599 -77023748 + L1PA16 LINE L1 3395 6166 0 486 251 53 27 chr4 125304611 125304798 -77023549 - L1MEc LINE L1 -2369 3846 3655 758 234 50 0 chr4 125304809 125305027 -77023320 - L1MEc LINE L1 -3044 3171 2943 871 293 125 13 chr4 125305047 125305657 -77022690 - L1MEc LINE L1 -3338 2877 2200 411 306 48 75 chr4 125305663 125305957 -77022390 - L1MEc LINE L1 -4163 2233 1948 279 294 254 0 chr4 125306199 125306325 -77022022 - MIR SINE MIR -48 214 57 910 249 76 83 chr4 125306765 125307162 -77021185 - MER57B LTR ERV1 -2 432 39 1199 310 46 57 chr4 125307171 125308015 -77020332 - MER57A-int LTR ERV1 -382 7155 6321 4460 139 92 6 chr4 125308651 125310033 -77018314 + L1PA16 LINE L1 4707 6157 -9 427 248 0 36 chr4 125310077 125310214 -77018133 - MER57A-int LTR ERV1 -1581 5956 5825 1654 227 17 73 chr4 125310533 125311052 -77017295 - MER57A-int LTR ERV1 -1717 5820 5331 359 223 19 19 chr4 125311124 125311227 -77017120 - MER57A-int LTR ERV1 -1587 4744 4642 1468 222 57 22 chr4 125311269 125311728 -77016619 - MER57A-int LTR ERV1 -1916 3020 2546 511 219 80 60 chr4 125311785 125312199 -77016148 - MER57A-int LTR ERV1 -2551 2572 2117 955 258 58 40 chr4 125312236 125312737 -77015610 - MER57A-int LTR ERV1 -2939 1997 1488 3420 147 55 3 chr4 125312738 125313318 -77015029 + MER4B LTR ERV1 1 610 0 2067 132 75 61 chr4 125313322 125313834 -77014513 + MER4B-int LTR ERV1 2 563 -6035 281 173 0 87 chr4 125313916 125314020 -77014327 + MER4B-int LTR ERV1 751 845 -5753 949 266 60 10 chr4 125314062 125314363 -77013984 + MER4B-int LTR ERV1 1845 2160 -4171 2233 125 19 30 chr4 125314367 125314735 -77013612 - THE1B LTR MaLR 0 364 1 11436 103 4 1 chr4 125314735 125316311 -77012036 - THE1B-int LTR MaLR 0 1580 1 1385 148 15 146 chr4 125316315 125316719 -77011628 - THE1B LTR MaLR -4 351 1 380 225 7 101 chr4 125316782 125316920 -77011427 - MER57A-int LTR ERV1 -4507 429 305 4418 134 23 6 chr4 125317299 125317992 -77010355 + MER50 LTR ERV1 7 711 -23 910 233 47 9 chr4 125318288 125318520 -77009827 - MER57A-int LTR ERV1 -7290 247 7 596 189 91 150 chr4 125318527 125318582 -77009765 - MER57A LTR ERV1 0 403 346 1740 165 7 4 chr4 125318582 125318907 -77009440 - AluSx SINE Alu 0 329 4 596 189 91 150 chr4 125318907 125319104 -77009243 - MER57A LTR ERV1 -57 346 165 2181 133 36 28 chr4 125319131 125319492 -77008855 - THE1B LTR MaLR 0 364 1 10887 114 11 5 chr4 125319497 125321061 -77007286 - THE1B-int LTR MaLR -6 1574 1 1894 171 30 25 chr4 125321061 125321423 -77006924 - THE1B LTR MaLR 0 364 1 315 238 224 14 chr4 125321424 125321567 -77006780 - MER57A LTR ERV1 -228 175 3 550 125 0 0 chr4 125321579 125321659 -77006688 + MADE1 DNA Mariner 1 80 0 270 272 76 43 chr4 125321661 125321753 -77006594 - L2 LINE L2 -3 3310 3216 280 231 0 77 chr4 125322444 125322522 -77005825 + Tigger2 DNA MER2_type 2 73 -2645 765 257 17 6 chr4 125322555 125322730 -77005617 - MER8 DNA MER2_type -62 177 1 463 277 77 29 chr4 125323877 125324132 -77004215 + MLT1H LTR MaLR 22 324 -225 265 362 38 0 chr4 125325094 125325199 -77003148 - MIR SINE MIR -113 149 41 29 28 0 0 chr4 125326835 125326871 -77001476 + AT_rich Low_complexity Low_complexity 1 36 0 1602 119 105 3 chr4 125327545 125327831 -77000516 - L1PA16 LINE L1 0 6166 5852 2781 167 30 51 chr4 125327831 125328706 -76999641 + L1PA16 LINE L1 5437 6309 -3 1875 153 3 0 chr4 125329291 125329603 -76998744 - AluSx SINE Alu 0 313 1 24 32 0 0 chr4 125329680 125329711 -76998636 + AT_rich Low_complexity Low_complexity 1 31 0 1847 145 7 3 chr4 125330236 125330525 -76997822 - AluSx SINE Alu -9 303 14 495 246 125 0 chr4 125330885 125331046 -76997301 - L1MC4a LINE L1 -308 5813 5682 921 263 38 7 chr4 125331083 125331372 -76996975 - MLT1F LTR MaLR -22 520 223 721 288 54 5 chr4 125331977 125332199 -76996148 - L1ME3A LINE L1 -6 6164 5932 217 245 19 0 chr4 125332238 125332291 -76996056 - MIR SINE MIR -30 232 179 1962 103 161 9 chr4 125332292 125332633 -76995714 - L1PA11 LINE L1 0 6174 5782 248 140 18 18 chr4 125332645 125332702 -76995645 + LTR66 LTR ERVL 384 440 -170 225 128 53 11 chr4 125332708 125332802 -76995545 + (TA)n Simple_repeat Simple_repeat 1 98 0 440 89 44 56 chr4 125332815 125332995 -76995352 + (TA)n Simple_repeat Simple_repeat 1 178 0 266 160 32 40 chr4 125333024 125333276 -76995071 + (TA)n Simple_repeat Simple_repeat 1 249 0 206 160 53 0 chr4 125333312 125333443 -76994904 + (TA)n Simple_repeat Simple_repeat 1 138 0 561 158 17 0 chr4 125333470 125333647 -76994700 + (TA)n Simple_repeat Simple_repeat 1 180 0 207 82 20 41 chr4 125333672 125333721 -76994626 + (TA)n Simple_repeat Simple_repeat 2 49 0 15241 159 24 15 chr4 125333740 125337049 -76991298 - L1PA11 LINE L1 -377 5791 2447 1554 196 46 25 chr4 125337238 125337605 -76990742 + THE1C LTR MaLR 1 375 0 239 247 32 22 chr4 125337701 125337801 -76990546 + MIR3 SINE MIR 56 159 -49 188 298 0 0 chr4 125338531 125338578 -76989769 + L2 LINE L2 3257 3303 -10 284 344 23 0 chr4 125338706 125338834 -76989513 - MIR SINE MIR -11 251 121 286 287 49 0 chr4 125338976 125339098 -76989249 - MER94 DNA DNA -6 128 1 1180 255 110 44 chr4 125339308 125339763 -76988584 - MLT1D LTR MaLR -15 490 6 29 47 0 0 chr4 125340730 125340773 -76987574 + AT_rich Low_complexity Low_complexity 1 43 0 964 193 11 113 chr4 125340951 125341216 -76987131 + L1MCa LINE L1 21 258 -6168 1940 162 75 14 chr4 125341217 125341643 -76986704 + L1MCa LINE L1 778 1229 -5197 1454 162 23 8 chr4 125341654 125341920 -76986427 - Tigger1 DNA MER2_type -2148 270 1 217 302 202 44 chr4 125342688 125342940 -76985407 + L2 LINE L2 3021 3312 -1 409 320 80 0 chr4 125343192 125343342 -76985005 + MIR SINE MIR 70 231 -31 3219 168 33 3 chr4 125343655 125344225 -76984122 + MER39B LTR ERV1 3 589 -64 9604 159 26 34 chr4 125344225 125344987 -76983360 + MER39B-int LTR ERV1 4058 4824 -1507 2273 89 0 14 chr4 125344987 125345308 -76983039 - AluSc SINE Alu 0 317 1 9604 159 26 34 chr4 125345308 125346457 -76981890 + MER39B-int LTR ERV1 4824 5956 -375 741 204 22 74 chr4 125346488 125346718 -76981629 + MER39B-int LTR ERV1 5950 6167 -164 3080 162 67 28 chr4 125346805 125347421 -76980926 + MER39B LTR ERV1 11 650 -3 21 0 0 0 chr4 125347681 125347702 -76980645 + AT_rich Low_complexity Low_complexity 1 21 0 409 180 34 0 chr4 125348045 125348134 -76980213 + MER5C DNA MER1_type 31 122 -202 225 250 11 65 chr4 125348162 125348254 -76980093 + MER5C DNA MER1_type 233 319 -5 799 288 42 0 chr4 125348413 125348625 -76979722 + MIR SINE MIR 4 224 -38 260 320 80 13 chr4 125348684 125348834 -76979513 + L2 LINE L2 2946 3105 -167 216 0 0 0 chr4 125350951 125350975 -76977372 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 210 71 0 0 chr4 125351406 125351434 -76976913 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 23 68 0 0 chr4 125353265 125353309 -76975038 + AT_rich Low_complexity Low_complexity 1 44 0 1894 232 50 61 chr4 125354726 125355286 -76973061 + MLT2B3 LTR ERVL 1 554 0 291 335 79 57 chr4 125355500 125355906 -76972441 + HAL1 LINE L1 83 497 -2010 2652 242 56 15 chr4 125355910 125356626 -76971721 + L1ME1 LINE L1 5410 6154 -12 242 373 59 12 chr4 125356693 125356862 -76971485 - L2 LINE L2 -1603 1711 1535 569 310 46 0 chr4 125356863 125357060 -76971287 - MIR SINE MIR 0 262 57 3106 170 57 7 chr4 125357070 125357669 -76970678 + MER67C LTR ERV1 82 710 0 2264 107 10 0 chr4 125358488 125358797 -76969550 + AluSx SINE Alu 1 312 0 372 43 0 0 chr4 125359420 125359466 -76968881 + (TG)n Simple_repeat Simple_repeat 2 47 0 2049 218 175 74 chr4 125359963 125360890 -76967457 + LTR28 LTR ERV1 1 1020 0 208 283 28 90 chr4 125362257 125362402 -76965945 - MIR SINE MIR -50 212 77 2694 225 29 21 chr4 125362448 125362853 -76965494 + MER82 DNA MER2_type 1 414 -239 180 0 0 0 chr4 125362853 125362873 -76965474 + (CA)n Simple_repeat Simple_repeat 1 20 0 2694 225 29 21 chr4 125362873 125363089 -76965258 + MER82 DNA MER2_type 414 627 -26 263 54 54 0 chr4 125363456 125363493 -76964854 - MLT2B1 LTR ERVL 0 464 426 213 169 34 45 chr4 125363504 125363567 -76964780 + (TA)n Simple_repeat Simple_repeat 2 65 -24 3213 140 76 14 chr4 125363567 125364132 -76964215 - MER7C DNA MER2_type -1 601 2 213 169 34 45 chr4 125364132 125364157 -76964190 + (TA)n Simple_repeat Simple_repeat 65 89 0 1673 229 84 44 chr4 125364163 125364617 -76963730 - MLT2B1 LTR ERVL -47 473 2 526 78 13 0 chr4 125366657 125366734 -76961613 - MADE1 DNA Mariner -2 78 1 3872 168 28 29 chr4 125367437 125368224 -76960123 - LTR1 LTR ERV1 0 785 1 7191 156 34 18 chr4 125368224 125368595 -76959752 - HUERS-P2 LTR ERV1 0 3088 2725 2527 67 0 0 chr4 125368595 125368895 -76959452 + AluY SINE Alu 1 300 -11 7191 156 34 18 chr4 125368895 125370818 -76957529 - HUERS-P2 LTR ERV1 -363 2725 635 26 0 0 0 chr4 125470830 125470856 -76857491 + AT_rich Low_complexity Low_complexity 1 26 0 433 315 16 8 chr4 125470856 125470983 -76857364 - MIR SINE MIR -63 145 18 2058 152 126 5 chr4 125471094 125471476 -76856871 + MSTA LTR MaLR 1 428 0 2248 223 69 27 chr4 125472204 125472756 -76855591 + MER119 DNA MER1_type 1 575 -8 1815 206 60 26 chr4 125473252 125473704 -76854643 - MLT1C LTR MaLR 0 467 1 2088 150 15 158 chr4 125474274 125474807 -76853540 - LTR32 LTR ERVL 0 471 15 21 0 0 0 chr4 125474893 125474914 -76853433 + AT_rich Low_complexity Low_complexity 1 21 0 2119 135 23 47 chr4 125476905 125477289 -76851058 + THE1C LTR MaLR 1 375 0 305 234 31 0 chr4 125477992 125478056 -76850291 + Charlie8 DNA MER1_type 2339 2404 -13 349 375 43 13 chr4 125478804 125479039 -76849308 - MIR SINE MIR -19 243 2 1322 308 24 10 chr4 125479741 125480156 -76848191 + LTR16A LTR ERVL 25 445 -5 329 309 130 6 chr4 125481109 125481271 -76847076 - MIR SINE MIR -15 247 66 305 380 63 13 chr4 125481674 125481832 -76846515 - MIR3 SINE MIR -38 170 5 252 278 77 57 chr4 125482328 125482576 -76845771 + MER112 DNA MER1_type 7 259 -1 399 321 119 26 chr4 125482627 125482929 -76845418 + MLT1K LTR MaLR 189 518 -70 187 264 88 44 chr4 125483861 125483952 -76844395 + MIR SINE MIR 12 106 -156 465 304 19 31 chr4 125484372 125484533 -76843814 - MIR3 SINE MIR -18 190 32 817 318 151 34 chr4 125484902 125485774 -76842573 + HAL1 LINE L1 325 1298 -1209 558 323 93 53 chr4 125485864 125486642 -76841705 - L2 LINE L2 0 3313 2493 1698 207 48 30 chr4 125487883 125488322 -76840025 + MLT1D LTR MaLR 59 505 0 1315 205 91 28 chr4 125488496 125488743 -76839604 - MER45B DNA AcHobo -542 1039 760 2329 102 0 9 chr4 125488743 125489058 -76839289 + AluSx SINE Alu 1 312 0 1315 205 91 28 chr4 125489058 125489171 -76839176 - MER45B DNA AcHobo -821 760 656 213 39 0 0 chr4 125489176 125489202 -76839145 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 5507 138 38 35 chr4 125489284 125490684 -76837663 - L1PB1 LINE L1 -1 6150 4766 6821 203 7 37 chr4 125490696 125491549 -76836798 - L1PB1 LINE L1 -2382 3764 2984 2440 81 0 0 chr4 125491549 125491857 -76836490 - AluY SINE Alu -3 308 1 6821 203 7 37 chr4 125491857 125492681 -76835666 - L1PB1 LINE L1 -3162 2984 2137 922 156 48 6 chr4 125493097 125493264 -76835083 + MLT1A1 LTR MaLR 1 174 -191 776 243 12 6 chr4 125493255 125493428 -76834919 + MER77 LTR ERV1 431 604 -1 * 494 319 106 25 chr4 125493446 125493681 -76834666 - MLT1J LTR MaLR -257 254 1 231 146 0 0 chr4 125495369 125495410 -76832937 + (TC)n Simple_repeat Simple_repeat 2 42 0 30 0 0 0 chr4 125496519 125496549 -76831798 + AT_rich Low_complexity Low_complexity 1 30 0 1358 134 0 56 chr4 125496855 125497086 -76831261 - MER1B DNA MER1_type 0 339 122 267 114 0 0 chr4 125497220 125497264 -76831083 + (TA)n Simple_repeat Simple_repeat 2 45 0 2032 110 50 0 chr4 125497390 125497672 -76830675 - AluSx SINE Alu -16 296 1 29 78 0 0 chr4 125498987 125499051 -76829296 + AT_rich Low_complexity Low_complexity 1 64 0 1034 195 22 35 chr4 125499222 125499448 -76828899 + Tigger2a DNA MER2_type 2 224 -210 14817 214 23 21 chr4 125499628 125504506 -76823841 - L1PA15 LINE L1 -2 6866 1951 2532 241 17 49 chr4 125504517 125505148 -76823199 - L1PA15 LINE L1 -6176 663 53 25 0 0 0 chr4 125505563 125505588 -76822759 + AT_rich Low_complexity Low_complexity 1 25 0 518 319 78 26 chr4 125506284 125506783 -76821564 + L1MC4a LINE L1 5306 5830 -1978 1432 185 22 54 chr4 125506791 125506891 -76821456 + Tigger7 DNA MER2_type 1 103 -630 2064 139 0 0 chr4 125506891 125507186 -76821161 + AluSg SINE Alu 1 295 -15 1432 185 22 54 chr4 125507186 125507361 -76820986 + Tigger7 DNA MER2_type 103 267 -466 381 167 89 0 chr4 125507359 125507449 -76820898 + Tigger7 DNA MER2_type 2389 2486 -1 * 231 154 0 0 chr4 125508110 125508149 -76820198 - MER110A LTR ERV1 -7 461 423 245 322 168 28 chr4 125509828 125510042 -76818305 - L2 LINE L2 -194 3078 2835 192 77 0 0 chr4 125510604 125510630 -76817717 + (T)n Simple_repeat Simple_repeat 1 26 0 238 169 14 42 chr4 125510915 125510976 -76817371 + CT-rich Low_complexity Low_complexity 4 64 -8 2277 85 0 7 chr4 125510976 125511283 -76817064 - AluSq SINE Alu -8 305 1 21 0 0 0 chr4 125511651 125511672 -76816675 + AT_rich Low_complexity Low_complexity 1 21 0 533 296 91 14 chr4 125511950 125512170 -76816177 - MIR SINE MIR -6 256 20 23 0 0 0 chr4 125512771 125512794 -76815553 + AT_rich Low_complexity Low_complexity 1 23 0 866 232 97 5 chr4 125512818 125513025 -76815322 - MLT1A2 LTR MaLR 0 374 149 964 147 90 6 chr4 125513041 125513218 -76815129 + AluJo SINE Alu 91 282 -30 225 0 0 0 chr4 125513222 125513247 -76815100 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 708 183 0 8 chr4 125513247 125513373 -76814974 - MLT1A2 LTR MaLR -240 125 1 1026 229 29 5 chr4 125513421 125513631 -76814716 - MER20 DNA MER1_type -3 216 2 1703 223 30 26 chr4 125513755 125514216 -76814131 + L1ME1 LINE L1 5700 6162 -4 428 337 47 0 chr4 125514886 125515058 -76813289 + MIR SINE MIR 20 199 -63 1080 247 184 49 chr4 125515058 125515503 -76812844 - MLT1C LTR MaLR 0 467 1 35 63 0 0 chr4 125515817 125515880 -76812467 + AT_rich Low_complexity Low_complexity 1 63 0 191 225 0 0 chr4 125515984 125516024 -76812323 - MIR SINE MIR -92 116 77 1563 83 14 9 chr4 125517200 125517418 -76810929 - L1PA10 LINE L1 -102 6066 5848 4277 80 2 17 chr4 125517418 125518017 -76810330 + L1PA10 LINE L1 5576 6167 -1 219 139 0 0 chr4 125518312 125518348 -76809999 + (TG)n Simple_repeat Simple_repeat 1 36 0 25 31 0 0 chr4 125518761 125518793 -76809554 + AT_rich Low_complexity Low_complexity 1 32 0 2224 105 23 7 chr4 125519199 125519505 -76808842 - AluSq SINE Alu -2 311 1 449 100 0 0 chr4 125519665 125519735 -76808612 - AluSc SINE Alu 0 309 240 251 146 24 0 chr4 125520227 125520268 -76808079 + MER92B LTR ERV1 3 44 -592 505 69 23 0 chr4 125520292 125520379 -76807968 + (TA)n Simple_repeat Simple_repeat 2 90 0 7125 45 0 0 chr4 125520379 125521552 -76806795 - L1PA5 LINE L1 -12 6142 4964 381 44 0 0 chr4 125521551 125521596 -76806751 + L1PA5 LINE L1 4932 4976 -1170 1793 209 61 35 chr4 125521600 125522089 -76806258 + MER92B LTR ERV1 57 558 -78 2404 215 63 5 chr4 125522090 125522695 -76805652 - L1M4 LINE L1 -1159 4987 4348 1554 210 56 43 chr4 125522768 125523229 -76805118 - MLT1C LTR MaLR 0 467 1 192 40 0 0 chr4 125523312 125523337 -76805010 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1057 266 67 77 chr4 125524137 125524555 -76803792 - LTR16C LTR ERVL -5 486 73 740 349 33 28 chr4 125524957 125525355 -76802992 + LTR16C LTR ERVL 75 474 -17 805 339 68 30 chr4 125525446 125526340 -76802007 - ERVL LTR ERVL -640 5124 4165 257 289 132 8 chr4 125527108 125527229 -76801118 + L2 LINE L2 3137 3272 0 8893 37 1 1 chr4 125527504 125529371 -76798976 - L1PA4 LINE L1 -1 6154 4293 252 341 78 71 chr4 125529413 125529668 -76798679 - L2 LINE L2 -9 3263 3007 15798 28 0 0 chr4 125529679 125531579 -76796768 - L1P LINE L1 -1961 4185 2286 2017 60 0 4 chr4 125531581 125531833 -76796514 - AluY SINE Alu -15 296 46 6002 133 28 26 chr4 125533577 125534600 -76793747 - Tigger1 DNA MER2_type 0 2418 1394 796 77 10 0 chr4 125534600 125534704 -76793643 + MSTA LTR MaLR 1 105 -323 29 0 0 0 chr4 125534731 125534760 -76793587 + AT_rich Low_complexity Low_complexity 1 29 0 7157 52 23 14 chr4 125535492 125536457 -76791890 - L1PA5 LINE L1 -1 6153 5186 13351 41 16 0 chr4 125536461 125538131 -76790216 - L1P LINE L1 -743 5403 3707 1841 157 22 3 chr4 125538138 125538450 -76789897 + MSTA LTR MaLR 111 428 0 * 7368 144 27 16 chr4 125538450 125539541 -76788806 - Tigger1 DNA MER2_type -1020 1398 288 2404 71 0 0 chr4 125539541 125539866 -76788481 - AluY SINE Alu 0 311 1 7368 144 27 16 chr4 125539866 125540054 -76788293 - Tigger1 DNA MER2_type -2130 288 104 24758 139 20 23 chr4 125540080 125546468 -76781879 + L1PA8A LINE L1 5 6445 -1 455 279 9 0 chr4 125546493 125546604 -76781743 - Tigger1 DNA MER2_type -2301 117 6 2467 70 0 22 chr4 125547758 125548073 -76780274 - AluY SINE Alu -3 308 1 261 0 0 0 chr4 125548461 125548490 -76779857 + (TG)n Simple_repeat Simple_repeat 1 29 0 478 316 75 9 chr4 125549016 125549244 -76779103 - MLT1J LTR MaLR -268 243 1 1797 133 0 0 chr4 125549556 125549827 -76778520 + Tigger5 DNA MER2_type 2052 2322 -1 1234 174 49 7 chr4 125549991 125550278 -76778069 + AluSx SINE Alu 1 299 -13 23 33 0 0 chr4 125550670 125550700 -76777647 + AT_rich Low_complexity Low_complexity 1 30 0 581 300 93 30 chr4 125550864 125551358 -76776989 - L1ME4a LINE L1 -199 5922 5398 1968 77 0 81 chr4 125552200 125552485 -76775862 + AluSg SINE Alu 28 289 -21 29 78 0 0 chr4 125552497 125552561 -76775786 + AT_rich Low_complexity Low_complexity 1 64 0 246 201 37 43 chr4 125552561 125552725 -76775622 + (TTATA)n Simple_repeat Simple_repeat 1 163 0 230 189 63 11 chr4 125552680 125552775 -76775572 + (TATAA)n Simple_repeat Simple_repeat 4 103 0 * 202 194 0 0 chr4 125553218 125553254 -76775093 + GA-rich Low_complexity Low_complexity 4 39 0 21 0 0 0 chr4 125553603 125553624 -76774723 + AT_rich Low_complexity Low_complexity 1 21 0 731 332 88 53 chr4 125553631 125554570 -76773777 + L1ME4a LINE L1 4232 5203 -943 29 0 0 0 chr4 125554715 125554744 -76773603 + AT_rich Low_complexity Low_complexity 1 29 0 555 310 84 31 chr4 125554744 125555099 -76773248 + L1ME4a LINE L1 5391 5764 -357 269 253 24 0 chr4 125555128 125555211 -76773136 + (TA)n Simple_repeat Simple_repeat 2 86 0 336 282 106 53 chr4 125558978 125559148 -76769199 - MER5A DNA MER1_type -9 180 2 183 250 42 21 chr4 125559156 125559204 -76769143 - MIR SINE MIR -144 64 16 25 0 0 0 chr4 125559633 125559658 -76768689 + AT_rich Low_complexity Low_complexity 1 25 0 2140 148 53 11 chr4 125560502 125560880 -76767467 - MSTD LTR MaLR 0 396 3 1817 120 100 26 chr4 125561834 125562183 -76766164 + THE1C LTR MaLR 1 375 0 23 54 0 0 chr4 125562402 125562439 -76765908 + AT_rich Low_complexity Low_complexity 1 37 0 386 255 62 21 chr4 125562609 125562754 -76765593 + L1ME4a LINE L1 5968 6118 -3 461 335 101 36 chr4 125562877 125563040 -76765307 - MLT1J LTR MaLR -144 367 216 2082 221 64 66 chr4 125563040 125563488 -76764859 - MLT1E LTR MaLR 0 593 145 576 0 0 0 chr4 125563488 125563552 -76764795 + (CATAA)n Simple_repeat Simple_repeat 3 66 0 2082 221 64 66 chr4 125563552 125563697 -76764650 - MLT1E LTR MaLR -448 145 1 461 335 101 36 chr4 125563697 125563870 -76764477 - MLT1J LTR MaLR -295 216 9 217 372 0 0 chr4 125564290 125564368 -76763979 - MIR SINE MIR -151 111 34 950 193 16 5 chr4 125566508 125566695 -76761652 + MER5A DNA MER1_type 1 189 0 2181 118 7 0 chr4 125567508 125567812 -76760535 - AluSx SINE Alu -2 310 5 2115 134 0 0 chr4 125568089 125568387 -76759960 + AluSx SINE Alu 3 300 -12 282 56 0 0 chr4 125568389 125568425 -76759922 + (TA)n Simple_repeat Simple_repeat 2 37 0 518 265 131 88 chr4 125569667 125569728 -76758619 - MLT1K LTR MaLR -14 574 517 2203 83 3 0 chr4 125569728 125570018 -76758329 + AluY SINE Alu 1 291 -20 518 265 131 88 chr4 125570018 125570504 -76757843 - MLT1K LTR MaLR -71 517 3 334 266 156 111 chr4 125570876 125571229 -76757118 - L1M2 LINE L1 -5826 1023 655 312 297 40 0 chr4 125574514 125574615 -76753732 + MIR SINE MIR 42 146 -62 784 280 63 21 chr4 125574777 125575016 -76753331 - MIR SINE MIR -13 249 1 203 260 0 20 chr4 125575125 125575175 -76753172 - L2 LINE L2 0 3313 3265 561 349 86 28 chr4 125576901 125577543 -76750804 - L2 LINE L2 -1 3312 2630 283 214 80 54 chr4 125577581 125577693 -76750654 - L2 LINE L2 -918 2396 2282 367 353 35 12 chr4 125577733 125577906 -76750441 - L2 LINE L2 -1009 2305 2129 258 298 84 0 chr4 125578142 125578172 -76750175 - MIR SINE MIR -30 232 206 1648 154 23 23 chr4 125578172 125578334 -76750013 - AluJb SINE Alu -13 299 135 429 76 0 0 chr4 125578334 125578400 -76749947 + (TA)n Simple_repeat Simple_repeat 1 66 0 1648 154 23 23 chr4 125578400 125578536 -76749811 - AluJb SINE Alu -176 136 1 258 298 84 0 chr4 125578536 125578636 -76749711 - MIR SINE MIR -56 206 91 300 264 14 0 chr4 125578712 125578784 -76749563 + MIR SINE MIR 40 112 -150 261 57 0 0 chr4 125580351 125580386 -76747961 + (TC)n Simple_repeat Simple_repeat 2 36 0 190 368 0 26 chr4 125580827 125580903 -76747444 - L2 LINE L2 -44 3228 3155 2266 152 16 21 chr4 125582133 125582514 -76745833 - MSTD LTR MaLR -14 382 4 1000 330 35 39 chr4 125583449 125584080 -76744267 + L1PA16 LINE L1 1 1405 -6169 491 212 0 0 chr4 125584190 125584289 -76744058 + L1PA16 LINE L1 2084 2182 -5399 14274 248 27 22 chr4 125584516 125589110 -76739237 + L1PA16 LINE L1 2182 6797 -787 564 175 44 0 chr4 125589108 125589222 -76739125 + L1 LINE L1 4140 4258 -1888 * 4956 135 19 5 chr4 125589230 125590029 -76738318 + L1PA16 LINE L1 6785 7594 -10 23 0 0 0 chr4 125593123 125593146 -76735201 + AT_rich Low_complexity Low_complexity 1 23 0 201 294 0 0 chr4 125594096 125594147 -76734200 - L2 LINE L2 0 3313 3263 623 365 87 34 chr4 125594513 125595376 -76732971 - L2 LINE L2 -683 2631 1723 270 154 0 0 chr4 125595379 125595418 -76732929 + MER81 DNA DNA 1 39 -75 27 62 0 0 chr4 125595536 125595584 -76732763 + AT_rich Low_complexity Low_complexity 1 48 0 369 0 0 0 chr4 125596093 125596134 -76732213 + (TG)n Simple_repeat Simple_repeat 1 41 0 397 298 81 23 chr4 125597712 125598153 -76730194 - L1MEc LINE L1 -3637 2578 2155 701 256 292 16 chr4 125598496 125598861 -76729486 + L2 LINE L2 2638 3096 -217 342 258 52 0 chr4 125598960 125599057 -76729290 - MER63 DNA MER1_type -332 730 3 322 71 0 0 chr4 125599085 125599127 -76729220 + MADE1 DNA Mariner 1 42 -38 484 207 112 26 chr4 125599137 125599253 -76729094 + L2 LINE L2 3188 3313 0 2306 140 34 0 chr4 125599284 125599670 -76728677 - MER57A LTR ERV1 0 403 5 252 194 56 28 chr4 125599701 125599773 -76728574 - HAL1 LINE L1 -838 1669 1596 183 129 0 0 chr4 125599943 125599974 -76728373 + (TC)n Simple_repeat Simple_repeat 2 32 0 2239 101 3 0 chr4 125600409 125600705 -76727642 + AluSp SINE Alu 3 299 -14 637 274 106 18 chr4 125601137 125601363 -76726984 - MIR SINE MIR -3 259 14 28 0 0 0 chr4 125602032 125602060 -76726287 + AT_rich Low_complexity Low_complexity 1 28 0 2172 180 57 36 chr4 125602186 125602681 -76725666 - MLT1D LTR MaLR 0 505 1 586 34 115 9 chr4 125603558 125603881 -76724466 + (TA)n Simple_repeat Simple_repeat 1 357 0 506 59 95 14 chr4 125603916 125604144 -76724203 + (TA)n Simple_repeat Simple_repeat 1 246 0 1231 98 5 16 chr4 125604932 125605116 -76723231 + L1PA8 LINE L1 5991 6172 0 616 195 102 0 chr4 125605351 125605469 -76722878 - FLAM_A SINE Alu 0 133 4 229 290 138 69 chr4 125605723 125605868 -76722479 - MER5A DNA MER1_type -31 158 4 22 35 0 0 chr4 125605962 125605991 -76722356 + AT_rich Low_complexity Low_complexity 1 29 0 32 0 0 0 chr4 125606681 125606713 -76721634 + AT_rich Low_complexity Low_complexity 1 32 0 382 311 66 19 chr4 125606780 125606992 -76721355 - L1MC/D LINE L1 -2293 5515 5294 21 71 0 0 chr4 125607087 125607129 -76721218 + AT_rich Low_complexity Low_complexity 1 42 0 204 299 69 23 chr4 125607322 125607409 -76720938 + MIR3 SINE MIR 111 201 -7 3574 40 2 133 chr4 125607826 125608404 -76719943 - L1PA5 LINE L1 0 6154 5653 4921 118 29 8 chr4 125608435 125609201 -76719146 - L1PA15 LINE L1 -4 6812 6031 14129 221 27 20 chr4 125609201 125612080 -76716267 - L1PA15 LINE L1 -1287 5510 2585 7078 55 0 3 chr4 125612080 125613145 -76715202 - L1PA6 LINE L1 0 6154 5087 14129 221 27 20 chr4 125613145 125614504 -76713843 - L1PA15 LINE L1 -4212 2585 1238 287 288 85 8 chr4 125614513 125614631 -76713716 - L1PA12 LINE L1 -5241 2340 2214 293 332 97 18 chr4 125615284 125615510 -76712837 - L1PA12 LINE L1 -7331 250 7 2125 103 21 3 chr4 125615648 125615938 -76712409 + AluSg SINE Alu 1 295 -15 369 308 96 6 chr4 125615944 125616100 -76712247 + MIR SINE MIR 49 218 -44 1290 300 58 44 chr4 125616267 125617130 -76711217 - L2 LINE L2 -3 3310 2438 358 286 40 32 chr4 125617234 125617360 -76710987 + MIR SINE MIR 100 226 -36 716 289 139 0 chr4 125617364 125617644 -76710703 - L2 LINE L2 -893 2421 2103 372 299 91 13 chr4 125618171 125618325 -76710022 + MIR SINE MIR 29 194 -68 392 242 11 11 chr4 125618327 125618418 -76709929 - LTR40b LTR ERVL -196 266 176 2057 225 50 11 chr4 125619433 125619908 -76708439 - LTR40a LTR ERVL 0 519 26 2216 130 119 8 chr4 125619911 125620296 -76708051 - MSTA LTR MaLR 0 428 1 462 264 22 60 chr4 125620486 125620668 -76707679 + MIR SINE MIR 88 262 0 351 289 142 50 chr4 125620823 125621041 -76707306 - MIR SINE MIR -6 256 19 973 237 14 28 chr4 125621243 125621526 -76706821 + L1MA9 LINE L1 5996 6274 -38 2166 75 4 14 chr4 125622017 125622298 -76706049 + AluY SINE Alu 1 278 -33 189 0 0 0 chr4 125622301 125622322 -76706025 + (CAA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr4 125622481 125622504 -76705843 + AT_rich Low_complexity Low_complexity 1 23 0 349 299 78 42 chr4 125624271 125624438 -76703909 + MIR SINE MIR 49 221 -41 481 141 0 0 chr4 125628178 125628256 -76700091 + AluSg/x SINE Alu 219 296 -14 1139 157 9 45 chr4 125628266 125628489 -76699858 + L1PA15 LINE L1 5949 6163 -2 275 48 0 24 chr4 125629221 125629263 -76699084 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1063 25 0 0 chr4 125629263 125629385 -76698962 - L1PA5 LINE L1 -22 6132 6011 347 333 54 27 chr4 125629386 125629533 -76698814 - MIR SINE MIR -98 164 14 971 304 64 36 chr4 125629855 125630293 -76698054 - L2 LINE L2 -1 3312 2863 26 30 0 0 chr4 125630376 125630409 -76697938 + AT_rich Low_complexity Low_complexity 1 33 0 253 306 0 0 chr4 125630517 125630579 -76697768 + L2 LINE L2 3207 3268 -4 1445 186 39 96 chr4 125630950 125631337 -76697010 - MLT1A1 LTR MaLR 0 365 1 1015 288 45 82 chr4 125631853 125632108 -76696239 - L2 LINE L2 -1 3312 3084 741 138 55 7 chr4 125632108 125632253 -76696094 + L1MA9 LINE L1 6156 6307 -5 1015 288 45 82 chr4 125632253 125632524 -76695823 - L2 LINE L2 -229 3084 2805 3113 174 30 3 chr4 125632757 125633368 -76694979 - L1MB5 LINE L1 -12 6162 5536 391 238 0 12 chr4 125633434 125633514 -76694833 - Tigger5 DNA MER2_type -2244 79 1 26 0 0 0 chr4 125633660 125633686 -76694661 + AT_rich Low_complexity Low_complexity 1 26 0 489 62 0 0 chr4 125633838 125633903 -76694444 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 1811 224 13 65 chr4 125633904 125634382 -76693965 - MLT2B1 LTR ERVL -67 453 1 330 327 131 6 chr4 125634658 125634826 -76693521 + MER5A DNA MER1_type 1 189 0 332 308 115 0 chr4 125635039 125635143 -76693204 - L2 LINE L2 -7 3265 3150 399 289 44 72 chr4 125636218 125636436 -76691911 - MIR SINE MIR -29 233 17 2104 195 85 29 chr4 125637190 125637682 -76690665 + MLT2B1 LTR ERVL 1 520 0 257 302 47 31 chr4 125637882 125638011 -76690336 + MIR SINE MIR 23 153 -109 825 173 0 0 chr4 125638767 125638894 -76689453 - Tigger3(Golem) DNA MER2_type -2 3027 2901 238 323 0 0 chr4 125638890 125638952 -76689395 - Tigger3(Golem) DNA MER2_type -2966 63 2 * 620 200 34 23 chr4 125638976 125639151 -76689196 + L1ME4a LINE L1 5706 5882 -239 35 41 0 0 chr4 125639308 125639357 -76688990 + AT_rich Low_complexity Low_complexity 1 49 0 219 88 0 0 chr4 125641473 125641507 -76686840 + (CAGAGA)n Simple_repeat Simple_repeat 3 36 0 227 230 96 67 chr4 125642305 125642440 -76685907 + L2 LINE L2 3033 3171 -142 410 262 25 0 chr4 125642488 125642610 -76685737 - L1ME3A LINE L1 -8 6162 6038 2129 118 36 38 chr4 125643002 125643367 -76684980 + THE1B LTR MaLR 1 364 0 949 150 38 15 chr4 125643675 125643938 -76684409 - L1PA6 LINE L1 -324 5830 5684 195 129 0 0 chr4 125694203 125694234 -76634113 + (TA)n Simple_repeat Simple_repeat 2 32 0 188 163 0 41 chr4 125694347 125694396 -76633951 + GA-rich Low_complexity Low_complexity 2 48 0 11881 180 37 10 chr4 125695260 125697375 -76630972 - L1M1 LINE L1 -5376 2189 19 767 340 114 40 chr4 125697551 125698438 -76629909 - L2 LINE L2 -9 3304 2354 416 291 70 17 chr4 125699244 125699416 -76628931 - MIR SINE MIR -80 182 2 745 176 99 7 chr4 125699455 125699597 -76628750 + FRAM SINE Alu 1 152 -24 362 158 12 24 chr4 125699903 125699985 -76628362 + L1PA16 LINE L1 6085 6165 -1 251 305 38 9 chr4 125700575 125700680 -76627667 - L2 LINE L2 -463 2851 2744 2319 129 13 24 chr4 125704261 125704640 -76623707 - THE1C LTR MaLR 0 375 1 21 82 0 0 chr4 125705680 125705729 -76622618 + AT_rich Low_complexity Low_complexity 1 49 0 232 48 48 0 chr4 125706152 125706194 -76622153 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 21 36 0 0 chr4 125707750 125707778 -76620569 + AT_rich Low_complexity Low_complexity 1 28 0 2380 75 0 0 chr4 125707902 125708195 -76620152 - AluY SINE Alu -18 293 1 22 35 0 0 chr4 125709238 125709267 -76619080 + AT_rich Low_complexity Low_complexity 1 29 0 252 300 55 9 chr4 125709663 125709773 -76618574 + MER117 DNA MER1_type 80 194 -3 8228 28 1 0 chr4 125710406 125712135 -76616212 - L1PA3 LINE L1 -20 6135 4406 11103 66 1 4 chr4 125712136 125713550 -76614797 + L1P LINE L1 11 1419 -4727 1243 119 7 10 chr4 125713548 125713816 -76614531 - L1P LINE L1 -741 5427 5160 * 2247 236 94 9 chr4 125713816 125714258 -76614089 - L1M4c LINE L1 -4516 1787 1384 186 43 0 0 chr4 125714258 125714281 -76614066 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2247 236 94 9 chr4 125714281 125714756 -76613591 - L1M4c LINE L1 -4919 1384 796 301 338 10 11 chr4 125714886 125714984 -76613363 - L1M3de LINE L1 -5213 678 318 1004 289 17 30 chr4 125715045 125715343 -76613004 - L1M3de LINE L1 -5597 294 1 1430 255 136 45 chr4 125715365 125716429 -76611918 - L1MC4 LINE L1 -622 7420 6455 2136 112 13 3 chr4 125716429 125716732 -76611615 + AluY SINE Alu 1 306 -5 1430 255 136 45 chr4 125716732 125717465 -76610882 - L1MC4 LINE L1 -1587 6455 5379 280 391 35 62 chr4 125717638 125717894 -76610453 - L2 LINE L2 -20 3252 3004 2201 167 9 4 chr4 125718378 125718937 -76609410 - MER6 DNA MER2_type 0 865 1 276 366 93 6 chr4 125719372 125719533 -76608814 + MIR3 SINE MIR 30 204 -4 189 0 0 0 chr4 125720304 125720325 -76608022 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2146 96 0 3 chr4 125720327 125720609 -76607738 - AluSx SINE Alu -31 281 1 346 227 71 65 chr4 125720756 125720910 -76607437 - L2 LINE L2 0 3313 3159 476 193 0 0 chr4 125721607 125721695 -76606652 + Tigger7 DNA MER2_type 30 117 -616 263 377 72 31 chr4 125722121 125722344 -76606003 - L2 LINE L2 -48 3224 2993 200 167 48 0 chr4 125722697 125722739 -76605608 + T-rich Low_complexity Low_complexity 2 45 0 7838 18 0 0 chr4 125722749 125723887 -76604460 - L1PA3 LINE L1 0 6155 5018 10824 24 0 0 chr4 125723887 125725263 -76603084 + L1PA3 LINE L1 3646 5021 -1125 2314 87 0 0 chr4 125725844 125726133 -76602214 - AluY SINE Alu -22 289 1 22 35 0 0 chr4 125727116 125727145 -76601202 + AT_rich Low_complexity Low_complexity 1 29 0 3549 130 12 3 chr4 125727491 125728066 -76600281 + L1PA13 LINE L1 5581 6160 -3 12558 199 36 36 chr4 125728066 125732686 -76595661 + L1MB1 LINE L1 2917 7582 -5 326 244 51 81 chr4 125732733 125732930 -76595417 + L1MC4 LINE L1 7483 7673 -369 509 236 116 87 chr4 125732979 125733067 -76595280 - MLT1F1 LTR MaLR -33 534 450 2294 101 0 0 chr4 125733067 125733365 -76594982 + AluSx SINE Alu 1 298 -14 509 236 116 87 chr4 125733365 125733769 -76594578 - MLT1F1 LTR MaLR -117 450 1 408 305 35 10 chr4 125733769 125733969 -76594378 + L1MC4 LINE L1 7698 7902 -140 2120 93 0 68 chr4 125733984 125734306 -76594041 + AluSg SINE Alu 3 302 -8 515 239 72 14 chr4 125734426 125734564 -76593783 + L2 LINE L2 2701 2846 -468 367 176 73 0 chr4 125734561 125734629 -76593718 - L2 LINE L2 -350 2964 2892 * 369 262 150 30 chr4 125735834 125736067 -76592280 + L1ME4a LINE L1 5591 5851 -270 402 190 13 0 chr4 125736609 125736688 -76591659 - MIR SINE MIR -27 235 156 208 206 0 0 chr4 125736688 125736722 -76591625 + (TG)n Simple_repeat Simple_repeat 1 34 0 241 360 44 0 chr4 125736744 125736858 -76591489 - MIR SINE MIR -70 192 74 27 29 0 0 chr4 125739670 125739704 -76588643 + AT_rich Low_complexity Low_complexity 1 34 0 431 92 69 11 chr4 125739731 125739818 -76588529 + L1PA12 LINE L1 6077 6168 0 450 187 252 0 chr4 125740034 125740157 -76588190 + MER105 DNA DNA 7 160 -44 4135 173 4 1 chr4 125741722 125742446 -76585901 - L1MB2 LINE L1 -2 6169 5444 433 136 123 0 chr4 125742469 125742550 -76585797 - LTR40b LTR ERVL -27 435 345 1133 238 20 12 chr4 125742589 125742841 -76585506 - LTR40a LTR ERVL -251 268 15 2409 146 0 0 chr4 125743650 125744026 -76584321 - L1PA16 LINE L1 -2 6164 5789 251 217 0 0 chr4 125744040 125744086 -76584261 - MER31A LTR ERV1 -406 79 34 365 225 12 0 chr4 125744086 125744166 -76584181 - MER41-int LTR ERV1 -4135 988 908 1947 197 39 163 chr4 125744454 125745252 -76583095 - MER41-int LTR ERV1 -4091 2240 1542 824 176 23 11 chr4 125745264 125745440 -76582907 - MER41-int LTR ERV1 -3562 1374 1197 689 158 51 57 chr4 125745454 125745612 -76582735 - MER41-int LTR ERV1 -4802 1529 1373 353 138 38 38 chr4 125745810 125745890 -76582457 - MER41-int LTR ERV1 -4954 1377 1298 899 245 177 15 chr4 125745910 125746306 -76582041 - MER41-int LTR ERV1 -5511 820 361 343 197 0 28 chr4 125746310 125746381 -76581966 - MER41-int LTR ERV1 -4558 1388 1320 1859 161 74 11 chr4 125747769 125748139 -76580208 + MLT2D LTR ERVL 5 534 -20 423 0 0 0 chr4 125748162 125748209 -76580138 + (CA)n Simple_repeat Simple_repeat 2 48 0 33 0 0 0 chr4 125749022 125749055 -76579292 + AT_rich Low_complexity Low_complexity 1 33 0 2370 147 18 18 chr4 125749081 125749475 -76578872 - MER57A LTR ERV1 -2 401 8 1413 136 40 0 chr4 125749492 125749720 -76578627 - MER57A-int LTR ERV1 -29 7508 7272 730 115 33 8 chr4 125749720 125749842 -76578505 - LTR54B LTR ERV1 -371 127 3 9408 143 14 14 chr4 125749842 125749871 -76578476 - MER57A-int LTR ERV1 -389 7148 7120 3339 90 18 0 chr4 125749871 125750316 -76578031 - MLT2A2 LTR ERVL 0 453 1 9408 143 14 14 chr4 125750316 125751846 -76576501 - MER57A-int LTR ERV1 -416 7121 5589 43 0 0 0 chr4 125751851 125751894 -76576453 + AT_rich Low_complexity Low_complexity 1 43 0 5752 179 37 29 chr4 125751894 125752626 -76575721 - MER57A-int LTR ERV1 -1587 4744 4019 1826 166 3 3 chr4 125752626 125752916 -76575431 - AluSx SINE Alu -22 290 1 5752 179 37 29 chr4 125752916 125754045 -76574302 - MER57A-int LTR ERV1 -2312 4019 1707 478 231 19 0 chr4 125754155 125754259 -76574088 - MER57A-int LTR ERV1 -2872 3459 3354 461 174 19 12 chr4 125754316 125754489 -76573858 - MER57A-int LTR ERV1 -2991 3340 3081 273 176 81 14 chr4 125754429 125754503 -76573844 - LTR57-int LTR ERVL -4256 1087 1009 * 404 195 48 47 chr4 125754492 125754729 -76573618 - MER57A-int LTR ERV1 -3732 1996 1295 425 173 13 0 chr4 125754870 125754945 -76573402 - MER34C LTR ERV1 -355 230 155 322 213 67 13 chr4 125755019 125755094 -76573253 - MER57A-int LTR ERV1 -4123 3414 3336 1268 112 60 0 chr4 125755148 125755363 -76572984 - L1MA2 LINE L1 -2 7721 7494 3443 157 5 0 chr4 125755369 125756268 -76572079 - L1MA2 LINE L1 -668 7055 6153 12067 184 28 9 chr4 125758466 125758800 -76569547 - L1MA2 LINE L1 -1399 6166 5840 2318 128 25 0 chr4 125758800 125759153 -76569194 + THE1B LTR MaLR 1 362 -2 12067 184 28 9 chr4 125759153 125761314 -76567033 - L1MA2 LINE L1 -1725 5840 3622 2323 102 0 0 chr4 125761369 125761663 -76566684 - AluSc SINE Alu -15 294 1 15158 136 31 6 chr4 125761666 125764116 -76564231 - L1MA2 LINE L1 -3935 3630 1119 923 138 28 17 chr4 125764163 125764344 -76564003 - MER57A-int LTR ERV1 -6696 841 659 8641 196 17 10 chr4 125764349 125765757 -76562590 - L1PA16 LINE L1 0 6166 4769 197 33 33 0 chr4 125765757 125765787 -76562560 + (TAG)n Simple_repeat Simple_repeat 1 31 0 8641 196 17 10 chr4 125765787 125767170 -76561177 - L1PA16 LINE L1 -1397 4769 3357 3583 165 30 40 chr4 125767170 125767849 -76560498 - MER57A-int LTR ERV1 -6865 672 1 2396 144 7 20 chr4 125767857 125768261 -76560086 - MER57A LTR ERV1 -4 399 1 228 268 14 0 chr4 125768261 125768332 -76560015 + (TA)n Simple_repeat Simple_repeat 2 73 0 238 300 46 18 chr4 125769208 125769344 -76559003 + MIR SINE MIR 2 176 -86 2306 44 7 0 chr4 125769393 125769664 -76558683 - AluY SINE Alu -9 302 30 196 330 89 36 chr4 125769924 125770036 -76558311 - L2 LINE L2 -241 3031 2914 206 402 108 16 chr4 125770064 125770315 -76558032 - L2 LINE L2 -453 2861 2588 841 254 148 29 chr4 125770316 125770627 -76557720 + L1MC4a LINE L1 5521 5868 -1940 28 0 0 0 chr4 125770627 125770655 -76557692 + AT_rich Low_complexity Low_complexity 1 28 0 279 0 0 0 chr4 125770710 125770741 -76557606 + (CA)n Simple_repeat Simple_repeat 2 32 0 24 0 0 0 chr4 125772341 125772365 -76555982 + AT_rich Low_complexity Low_complexity 1 24 0 2471 81 0 0 chr4 125774044 125774342 -76554005 + AluSc SINE Alu 1 298 -11 1271 248 32 27 chr4 125775004 125775467 -76552880 - Charlie7 DNA MER1_type -1889 723 203 458 263 90 8 chr4 125775540 125775673 -76552674 + MER69 DNA AcHobo 156 299 -927 21 36 0 0 chr4 125775736 125775764 -76552583 + AT_rich Low_complexity Low_complexity 1 28 0 1120 223 0 17 chr4 125775904 125776142 -76552205 + AluJb SINE Alu 48 281 -31 22 35 0 0 chr4 125776153 125776182 -76552165 + AT_rich Low_complexity Low_complexity 1 29 0 311 224 0 26 chr4 125776490 125776566 -76551781 - MIR SINE MIR -13 249 176 502 282 28 58 chr4 125776956 125777247 -76551100 + L1ME4a LINE L1 5595 5876 -245 48 60 0 0 chr4 125777295 125777378 -76550969 + AT_rich Low_complexity Low_complexity 1 83 0 188 368 118 39 chr4 125777523 125777727 -76550620 - L2 LINE L2 -9 3263 3044 1335 191 27 13 chr4 125777902 125778200 -76550147 + MER33 DNA MER1_type 23 324 0 287 371 73 21 chr4 125778205 125778491 -76549856 - L2 LINE L2 -639 2675 2375 526 221 8 57 chr4 125778500 125778622 -76549725 - L2 LINE L2 0 3313 3198 547 366 153 28 chr4 125778642 125779930 -76548417 - L2 LINE L2 -949 2365 917 643 245 43 58 chr4 125780003 125780191 -76548156 - MIR SINE MIR -15 247 63 13285 112 82 1 chr4 125781432 125784226 -76544121 + L1PA10 LINE L1 3274 6167 -1 435 312 46 12 chr4 125784588 125784761 -76543586 + MER5A DNA MER1_type 7 185 -4 22 0 0 0 chr4 125785557 125785579 -76542768 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 125786655 125786686 -76541661 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 125787585 125787606 -76540741 + AT_rich Low_complexity Low_complexity 1 21 0 1077 233 31 27 chr4 125788950 125789208 -76539139 - MIR SINE MIR 0 262 4 2597 40 0 3 chr4 125791210 125791512 -76536835 - AluY SINE Alu -8 303 3 1310 201 52 34 chr4 125792186 125792514 -76535833 - L1ME1 LINE L1 -4 6162 5829 2117 116 3 0 chr4 125792621 125792914 -76535433 + AluSx SINE Alu 1 294 -18 509 302 29 34 chr4 125793541 125793746 -76534601 - MIR SINE MIR -39 223 20 717 216 49 27 chr4 125793826 125793894 -76534453 + MER5A DNA MER1_type 1 66 -123 2363 67 0 7 chr4 125793894 125794194 -76534153 + AluY SINE Alu 1 298 -13 717 216 49 27 chr4 125794194 125794310 -76534037 + MER5A DNA MER1_type 66 189 0 22 70 0 0 chr4 125794543 125794586 -76533761 + AT_rich Low_complexity Low_complexity 1 43 0 2294 91 0 0 chr4 125794656 125794954 -76533393 + AluSx SINE Alu 1 298 -14 21 36 0 0 chr4 125795817 125795845 -76532502 + AT_rich Low_complexity Low_complexity 1 28 0 1398 206 22 35 chr4 125795950 125796310 -76532037 + AluJo SINE Alu 1 356 0 198 361 76 0 chr4 125796318 125796437 -76531910 - MIR3 SINE MIR -78 130 3 1824 174 0 7 chr4 125797732 125798036 -76530311 + AluJo SINE Alu 1 302 -10 2122 121 7 0 chr4 125798350 125798648 -76529699 + AluSx SINE Alu 1 300 -12 189 0 0 0 chr4 125798648 125798669 -76529678 + (GGAA)n Simple_repeat Simple_repeat 3 23 0 182 312 65 21 chr4 125798942 125799035 -76529312 - L2 LINE L2 -8 3264 3168 204 154 0 58 chr4 125801037 125801089 -76527258 + A-rich Low_complexity Low_complexity 4 52 0 679 234 76 23 chr4 125801179 125801350 -76526997 - MER58A DNA MER1_type -19 205 26 1259 163 48 80 chr4 125801429 125801718 -76526629 + AluJo SINE Alu 1 280 -32 851 66 29 7 chr4 125801718 125801854 -76526493 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 198 282 148 47 chr4 125802212 125802361 -76525986 - L2 LINE L2 -1 3312 3149 1448 183 104 31 chr4 125802448 125802831 -76525516 - LTR65 LTR ERV1 -91 578 168 820 126 178 0 chr4 125804808 125804982 -76523365 - MER3 DNA MER1_type -4 205 1 320 202 349 0 chr4 125806398 125806527 -76521820 - MER96 DNA MER1_type? -1 174 1 462 281 69 19 chr4 125809398 125809558 -76518789 - MIR SINE MIR -79 183 16 1418 202 62 16 chr4 125809763 125809854 -76518493 + L1MB8 LINE L1 5402 5487 -679 1578 119 116 54 chr4 125809854 125809926 -76518421 - THE1C LTR MaLR 0 375 309 2068 125 10 3 chr4 125809926 125810237 -76518110 + AluSq SINE Alu 1 313 0 1578 119 116 54 chr4 125810237 125810517 -76517830 - THE1C LTR MaLR -66 309 1 1418 202 62 16 chr4 125810517 125810797 -76517550 + L1MB8 LINE L1 5487 5790 -376 432 231 115 86 chr4 125810824 125810872 -76517475 + L1MB8 LINE L1 5927 5972 -206 2097 106 0 0 chr4 125810872 125811185 -76517162 + AluSq SINE Alu 1 313 0 432 231 115 86 chr4 125811185 125811376 -76516971 + L1MB8 LINE L1 5972 6176 -2 2252 110 0 0 chr4 125811671 125811972 -76516375 + AluSx SINE Alu 1 301 -11 303 28 0 0 chr4 125813329 125813365 -76514982 + (CA)n Simple_repeat Simple_repeat 1 36 0 2812 215 81 47 chr4 125813381 125814090 -76514257 - L1ME1 LINE L1 -2 6176 5493 2281 95 3 0 chr4 125814090 125814386 -76513961 - AluSp SINE Alu -16 297 1 2812 215 81 47 chr4 125814386 125814691 -76513656 - L1ME1 LINE L1 -685 5493 5200 278 25 0 25 chr4 125814691 125814731 -76513616 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2203 40 0 0 chr4 125814733 125814985 -76513362 - AluY SINE Alu -16 295 44 2812 215 81 47 chr4 125814985 125815630 -76512717 - L1ME1 LINE L1 -978 5200 4406 22 0 0 0 chr4 125816170 125816192 -76512155 + AT_rich Low_complexity Low_complexity 1 22 0 2335 107 0 0 chr4 125816211 125816521 -76511826 + AluSp SINE Alu 1 310 -3 2215 111 0 13 chr4 125817561 125817867 -76510480 + AluSq SINE Alu 1 302 -11 26 50 0 0 chr4 125818175 125818215 -76510132 + AT_rich Low_complexity Low_complexity 1 40 0 2129 109 0 20 chr4 125820742 125821035 -76507312 - AluSg SINE Alu -19 291 5 541 194 244 0 chr4 125822866 125823026 -76505321 + MLT2B1 LTR ERVL 224 422 -98 267 167 0 37 chr4 125823550 125823604 -76504743 - MLT2B1 LTR ERVL -5 515 464 231 204 0 0 chr4 125823604 125823658 -76504689 + (TA)n Simple_repeat Simple_repeat 1 54 0 2214 207 64 7 chr4 125823665 125824119 -76504228 - MLT2B1 LTR ERVL -40 480 1 31 44 0 0 chr4 125824703 125824748 -76503599 + AT_rich Low_complexity Low_complexity 1 45 0 12706 47 1 0 chr4 125825075 125826662 -76501685 + L1P LINE L1 3677 5265 -881 305 210 116 36 chr4 125826825 125826963 -76501384 + HAL1 LINE L1 2245 2393 -114 5761 174 27 89 chr4 125827222 125828766 -76499581 + Charlie1a DNA MER1_type 8 1455 0 308 206 250 17 chr4 125829839 125829943 -76498404 + MLT1E1 LTR MaLR 1 128 -494 483 322 54 0 chr4 125829943 125830059 -76498288 + L2 LINE L2 2483 2616 -698 2146 101 3 20 chr4 125830059 125830357 -76497990 + AluSc SINE Alu 1 293 -16 483 322 54 0 chr4 125830357 125830445 -76497902 + L2 LINE L2 2616 2698 -616 4129 130 89 106 chr4 125830445 125831786 -76496561 + pTR5 LTR ERV1 6 683 -31 815 282 133 31 chr4 125831786 125832361 -76495986 + L2 LINE L2 2676 3309 -4 35 63 0 0 chr4 125832518 125832581 -76495766 + AT_rich Low_complexity Low_complexity 1 63 0 378 276 103 0 chr4 125832644 125832760 -76495587 - MIR SINE MIR -78 184 57 564 219 271 0 chr4 125832805 125832997 -76495350 + MIR SINE MIR 17 260 -2 2143 113 17 0 chr4 125833036 125833327 -76495020 + AluSx SINE Alu 1 296 -16 226 341 8 0 chr4 125833780 125833903 -76494444 + L1M4 LINE L1 3685 3808 -2338 987 225 29 61 chr4 125833988 125834330 -76494017 - L1ME1 LINE L1 -9 6157 5827 1605 100 4 21 chr4 125834340 125834581 -76493766 - L1PA12 LINE L1 0 6168 5932 1343 122 0 5 chr4 125834628 125834824 -76493523 - AluSg/x SINE Alu -8 304 110 185 205 282 13 chr4 125835152 125835230 -76493117 - L2 LINE L2 -6 3266 3168 5306 250 121 24 chr4 125836393 125837509 -76490838 + L2 LINE L2 896 1902 -1412 1762 167 3 37 chr4 125837509 125837832 -76490515 - AluJo SINE Alu 0 312 1 5306 250 121 24 chr4 125837832 125838558 -76489789 + L2 LINE L2 1902 2917 -397 1377 220 100 23 chr4 125838560 125838910 -76489437 - MLT1E LTR MaLR -6 587 211 440 359 44 10 chr4 125839086 125839292 -76489055 + L2 LINE L2 2956 3168 -145 1253 285 74 35 chr4 125839297 125839823 -76488524 + MLT2F LTR ERVL 6 655 -8 359 266 40 40 chr4 125839828 125839952 -76488395 + L2 LINE L2 3168 3291 -22 1855 107 198 22 chr4 125840373 125840737 -76487610 + MSTA LTR MaLR 1 428 0 679 266 40 58 chr4 125840798 125841157 -76487190 + MLT1I LTR MaLR 1 398 -11 2126 186 135 27 chr4 125841157 125841669 -76486678 + MLT1F1 LTR MaLR 1 567 0 679 266 40 58 chr4 125841669 125841681 -76486666 + MLT1I LTR MaLR 398 409 0 195 314 100 0 chr4 125841985 125842055 -76486292 - L3 LINE CR1 -566 1011 935 1134 176 108 50 chr4 125842370 125842648 -76485699 + AluJb SINE Alu 1 294 -8 1220 193 168 0 chr4 125842913 125843235 -76485112 - L1MC3 LINE L1 0 7785 7410 1768 117 0 0 chr4 125843242 125843481 -76484866 - AluSq SINE Alu -74 239 1 417 295 43 79 chr4 125848708 125849037 -76479310 + L2 LINE L2 2997 3313 0 1096 156 9 61 chr4 125849167 125849398 -76478949 - MER20 DNA MER1_type 0 219 1 803 293 213 6 chr4 125849417 125849942 -76478405 + L2 LINE L2 589 1222 -2092 953 157 45 111 chr4 125850602 125850892 -76477455 + MER33 DNA MER1_type 1 257 -67 21 0 0 0 chr4 125851089 125851110 -76477237 + AT_rich Low_complexity Low_complexity 1 21 0 408 374 72 8 chr4 125851146 125851408 -76476939 + L2 LINE L2 2596 2874 -440 498 284 35 0 chr4 125851612 125851728 -76476619 + L2 LINE L2 3149 3268 -4 1669 169 27 20 chr4 125852222 125852517 -76475830 - AluJo SINE Alu -15 297 1 212 352 25 82 chr4 125855132 125855291 -76473056 - L2 LINE L2 -1 3271 3122 379 262 3 77 chr4 125855718 125855865 -76472482 - MIR SINE MIR -62 146 16 200 200 40 53 chr4 125856452 125856527 -76471820 - L3 LINE CR1 -112 1465 1392 498 272 77 137 chr4 125856689 125857032 -76471315 - L3 LINE CR1 -466 1111 808 797 114 0 41 chr4 125857032 125857155 -76471192 + L1PA8A LINE L1 6002 6119 -12 498 272 77 137 chr4 125857155 125857330 -76471017 - L3 LINE CR1 -769 808 624 298 351 90 9 chr4 125857415 125857526 -76470821 - MER5A DNA MER1_type -63 126 7 492 279 25 8 chr4 125857591 125857713 -76470634 + L2 LINE L2 3149 3272 0 1678 130 8 4 chr4 125857847 125858113 -76470234 + AluSx SINE Alu 40 306 0 531 272 88 45 chr4 125858191 125858727 -76469620 + L1MC4a LINE L1 4802 5360 -786 357 310 144 21 chr4 125858730 125859131 -76469216 + L1MC4a LINE L1 5399 5769 -397 24 0 0 0 chr4 125861537 125861561 -76466786 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 125862120 125862142 -76466205 + AT_rich Low_complexity Low_complexity 1 22 0 236 175 16 0 chr4 125862556 125862619 -76465728 + (TA)n Simple_repeat Simple_repeat 2 65 0 2333 95 3 3 chr4 125862930 125863235 -76465112 + AluSx SINE Alu 1 305 -7 1065 179 6 0 chr4 125864443 125864616 -76463731 + AluJo SINE Alu 106 279 -33 27 29 0 0 chr4 125864757 125864791 -76463556 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr4 125865147 125865173 -76463174 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 125866157 125866178 -76462169 + AT_rich Low_complexity Low_complexity 1 21 0 318 319 76 0 chr4 125866779 125866923 -76461424 + MLT1L LTR MaLR 128 282 -333 325 259 99 56 chr4 125867261 125867423 -76460924 - L1ME4a LINE L1 -210 5911 5743 1448 126 39 46 chr4 125867491 125867795 -76460552 + Charlie3 DNA MER1_type 57 2712 0 257 295 0 0 chr4 125867800 125867861 -76460486 + (CA)n Simple_repeat Simple_repeat 2 62 0 427 141 0 0 chr4 125868227 125868291 -76460056 + AluS SINE Alu 230 293 -17 1862 176 0 6 chr4 125868297 125868610 -76459737 - AluJb SINE Alu -1 311 1 35 63 0 0 chr4 125869326 125869389 -76458958 + AT_rich Low_complexity Low_complexity 1 63 0 356 264 145 25 chr4 125869563 125869722 -76458625 + MER5B DNA MER1_type 1 178 0 489 306 119 20 chr4 125869881 125870224 -76458123 - L1M4 LINE L1 -1603 4543 4167 612 260 35 56 chr4 125870357 125870695 -76457652 - L1M4 LINE L1 -2201 3945 3615 1907 121 0 0 chr4 125870760 125871024 -76457323 - AluSx SINE Alu -48 264 1 862 266 155 6 chr4 125871935 125872251 -76456096 + Charlie2 DNA MER1_type 4 366 -2416 245 205 9 45 chr4 125872252 125872364 -76455983 + Charlie2 DNA MER1_type 2231 2338 -524 336 244 0 0 chr4 125872419 125872509 -76455838 + (TATG)n Simple_repeat Simple_repeat 2 91 0 901 184 77 62 chr4 125872542 125872878 -76455469 + Charlie2 DNA MER1_type 2517 2857 -5 248 197 0 15 chr4 125873399 125873465 -76454882 + (TA)n Simple_repeat Simple_repeat 2 66 0 1973 150 28 98 chr4 125873760 125874219 -76454128 - L1MA9 LINE L1 -1 6311 5887 2022 91 53 50 chr4 125874235 125874574 -76453773 - L1MA9 LINE L1 -547 5787 5448 2629 142 14 5 chr4 125874616 125875038 -76453309 - MSTB LTR MaLR 0 426 1 661 209 99 33 chr4 125875853 125876035 -76452312 - MER82 DNA MER2_type -61 592 399 1054 202 35 43 chr4 125876035 125876292 -76452055 + MER82 DNA MER2_type 240 494 -159 405 203 89 0 chr4 125876290 125876369 -76451978 - MER82 DNA MER2_type -565 88 3 * 354 308 0 0 chr4 125877070 125877161 -76451186 + L2 LINE L2 3181 3271 -1 207 100 0 0 chr4 125877380 125877410 -76450937 + (A)n Simple_repeat Simple_repeat 1 30 0 934 147 63 153 chr4 125877635 125877935 -76450412 + MLT1B LTR MaLR 117 389 -1 2172 106 0 0 chr4 125879066 125879348 -76448999 + AluSx SINE Alu 1 282 -30 234 0 0 0 chr4 125879348 125879374 -76448973 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr4 125879990 125880011 -76448336 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 125880021 125880042 -76448305 + AT_rich Low_complexity Low_complexity 1 21 0 327 104 0 0 chr4 125880648 125880696 -76447651 + (CA)n Simple_repeat Simple_repeat 1 48 0 28 79 0 0 chr4 125882621 125882684 -76445663 + AT_rich Low_complexity Low_complexity 1 63 0 22 0 0 0 chr4 125883655 125883677 -76444670 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 125884379 125884402 -76443945 + AT_rich Low_complexity Low_complexity 1 23 0 2268 114 0 0 chr4 125884837 125885135 -76443212 + AluSx SINE Alu 1 298 -14 180 0 0 0 chr4 125885135 125885155 -76443192 + (TA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr4 125885748 125885769 -76442578 + AT_rich Low_complexity Low_complexity 1 21 0 931 280 140 46 chr4 125887065 125887180 -76441167 + MLT1J LTR MaLR 25 128 -383 734 159 51 0 chr4 125887180 125887337 -76441010 - L1MB3 LINE L1 0 6183 6019 931 280 140 46 chr4 125887337 125887350 -76440997 + MLT1J LTR MaLR 128 138 -373 1566 203 0 25 chr4 125887350 125887665 -76440682 - AluJo SINE Alu -5 307 1 931 280 140 46 chr4 125887665 125887971 -76440376 + MLT1J LTR MaLR 138 501 -10 1681 183 7 3 chr4 125887989 125888273 -76440074 - AluJo SINE Alu -26 286 2 1898 154 0 3 chr4 125888767 125889077 -76439270 + AluJb SINE Alu 1 309 0 304 294 50 2 chr4 125889717 125889897 -76438450 + MIR SINE MIR 34 256 -6 22 70 0 0 chr4 125890122 125890165 -76438182 + AT_rich Low_complexity Low_complexity 1 43 0 2038 128 13 13 chr4 125890565 125890863 -76437484 + AluSx SINE Alu 1 298 -14 1188 193 113 19 chr4 125891115 125891426 -76436921 + MER58B DNA MER1_type 2 341 0 197 282 12 0 chr4 125891761 125891846 -76436501 + GA-rich Low_complexity Low_complexity 3 88 0 230 303 34 19 chr4 125891848 125892056 -76436291 + L1ME LINE L1 5023 5233 -913 260 294 0 20 chr4 125892105 125892207 -76436140 + (TA)n Simple_repeat Simple_repeat 1 100 0 1488 199 0 0 chr4 125892208 125892470 -76435877 - AluJb SINE Alu -23 289 28 242 254 0 18 chr4 125892486 125892600 -76435747 + L1ME LINE L1 5297 5408 -754 471 152 9 116 chr4 125892977 125893003 -76435344 - L1PA16 LINE L1 -321 5845 5818 2104 91 40 3 chr4 125893003 125893300 -76435047 - AluSg SINE Alu -2 308 1 471 152 9 116 chr4 125893300 125893385 -76434962 - L1PA16 LINE L1 -348 5818 5746 * 1241 147 57 0 chr4 125893382 125893593 -76434754 + L1PA16 LINE L1 5839 6061 -105 22 0 0 0 chr4 125893615 125893637 -76434710 + AT_rich Low_complexity Low_complexity 1 22 0 577 259 61 18 chr4 125894607 125894793 -76433554 - MIR SINE MIR -16 246 57 186 301 68 0 chr4 125895042 125895115 -76433232 + MIR SINE MIR 63 140 -122 1342 81 168 0 chr4 125895177 125895281 -76433066 + MER30 DNA MER1_type 1 86 -144 213 39 0 0 chr4 125895281 125895307 -76433040 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1342 81 168 0 chr4 125895307 125895399 -76432948 + MER30 DNA MER1_type 86 230 0 1657 183 14 3 chr4 125895459 125895748 -76432599 - AluJo SINE Alu -19 293 2 252 186 88 29 chr4 125895893 125895995 -76432352 + L1ME LINE L1 5769 5876 -245 750 199 151 32 chr4 125897037 125897112 -76431235 - AluJo SINE Alu -104 208 143 2282 106 0 0 chr4 125897112 125897413 -76430934 - AluSg SINE Alu -9 301 1 750 199 151 32 chr4 125897413 125897523 -76430824 - AluJo SINE Alu -169 143 1 253 333 150 8 chr4 125898091 125898211 -76430136 - MIR SINE MIR -124 138 2 234 263 97 40 chr4 125898487 125898662 -76429685 + L1MC4 LINE L1 7311 7495 -547 * 605 272 45 87 chr4 125898653 125899140 -76429207 + L1MC4 LINE L1 7318 7894 -148 21 36 0 0 chr4 125899167 125899195 -76429152 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 125900277 125900300 -76428047 + AT_rich Low_complexity Low_complexity 1 23 0 216 316 118 32 chr4 125900883 125901070 -76427277 + L2 LINE L2 3104 3306 -7 283 392 76 41 chr4 125901143 125901536 -76426811 - L2 LINE L2 0 3272 2866 232 271 51 0 chr4 125902226 125902285 -76426062 - L3 LINE CR1 -632 945 884 33 0 0 0 chr4 125902637 125902670 -76425677 + AT_rich Low_complexity Low_complexity 1 33 0 231 264 0 14 chr4 125904044 125904116 -76424231 + GA-rich Low_complexity Low_complexity 4 74 0 220 322 189 14 chr4 125904294 125904437 -76423910 + MIR3 SINE MIR 27 194 -14 23 33 0 0 chr4 125905336 125905366 -76422981 + AT_rich Low_complexity Low_complexity 1 30 0 204 176 20 20 chr4 125905673 125905724 -76422623 + A-rich Low_complexity Low_complexity 3 53 0 185 40 100 20 chr4 125906087 125906137 -76422210 + (TTAA)n Simple_repeat Simple_repeat 2 55 0 3321 159 42 23 chr4 125908963 125909604 -76418743 - MER39B LTR ERV1 0 653 1 2229 98 3 0 chr4 125909722 125910008 -76418339 + AluSp SINE Alu 1 287 -26 1824 176 0 19 chr4 125911428 125911746 -76416601 + AluJo SINE Alu 1 312 0 337 263 39 32 chr4 125912546 125912702 -76415645 - MLT1J LTR MaLR -28 483 327 496 244 131 38 chr4 125912966 125913033 -76415314 - MER96 DNA MER1_type? 0 175 116 2006 123 55 35 chr4 125913033 125913399 -76414948 + THE1C LTR MaLR 2 374 -1 2086 123 14 0 chr4 125913400 125913692 -76414655 + AluSx SINE Alu 1 296 -16 496 244 131 38 chr4 125913692 125913782 -76414565 - MER96 DNA MER1_type? -58 117 1 2243 189 55 75 chr4 125914165 125915000 -76413347 - L1M4 LINE L1 -2107 4039 3162 1624 148 21 52 chr4 125915000 125915328 -76413019 - AluJo SINE Alu 0 319 1 2243 189 55 75 chr4 125915328 125915376 -76412971 - L1M4 LINE L1 -2984 3162 3115 1525 158 61 25 chr4 125915472 125915704 -76412643 - AluJo SINE Alu 0 367 145 2157 115 3 0 chr4 125915704 125916000 -76412347 - AluSp SINE Alu -16 297 1 201 39 0 0 chr4 125916003 125916029 -76412318 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1525 158 61 25 chr4 125916029 125916127 -76412220 - AluJo SINE Alu -223 144 23 2383 159 34 0 chr4 125916246 125916654 -76411693 - MSTB LTR MaLR -4 422 1 542 219 0 42 chr4 125916737 125916856 -76411491 + L2 LINE L2 3190 3303 -10 829 169 6 44 chr4 125917127 125917310 -76411037 + FRAM SINE Alu 1 171 -5 460 270 13 69 chr4 125917380 125917539 -76410808 + MIR SINE MIR 5 154 -108 717 207 7 0 chr4 125917558 125917693 -76410654 - AluJo SINE Alu -176 136 1 196 326 0 0 chr4 125917729 125917775 -76410572 + L2 LINE L2 3217 3262 -10 1777 174 0 19 chr4 125918253 125918570 -76409777 + AluJo SINE Alu 1 311 -1 831 135 0 0 chr4 125919097 125919223 -76409124 + AluSg/x SINE Alu 182 307 -3 2219 114 3 3 chr4 125919636 125919943 -76408404 + AluSx SINE Alu 1 307 -5 2336 96 3 0 chr4 125920524 125920827 -76407520 + AluSp SINE Alu 1 304 -9 2223 96 31 0 chr4 125921346 125921638 -76406709 + AluSg SINE Alu 1 301 -9 2032 127 0 32 chr4 125921903 125922211 -76406136 - AluSx SINE Alu -14 298 1 22 0 0 0 chr4 125922814 125922836 -76405511 + AT_rich Low_complexity Low_complexity 1 22 0 32 57 0 0 chr4 125923102 125923155 -76405192 + AT_rich Low_complexity Low_complexity 1 53 0 867 99 0 0 chr4 125923191 125923302 -76405045 + AluSp/q SINE Alu 188 298 -15 656 279 61 19 chr4 125924417 125924776 -76403571 + L1MC4 LINE L1 7028 7401 -641 2203 105 29 73 chr4 125924796 125925108 -76403239 + THE1B LTR MaLR 1 295 -69 2851 10 0 0 chr4 125925108 125925419 -76402928 - AluYa5 SINE Alu 0 311 1 2203 105 29 73 chr4 125925419 125925487 -76402860 + THE1B LTR MaLR 295 364 0 2584 183 70 179 chr4 125925667 125925849 -76402498 + L1MC4 LINE L1 6482 6682 -1360 1532 175 23 63 chr4 125925849 125926196 -76402151 + AluJo SINE Alu 1 312 0 2584 183 70 179 chr4 125926196 125927001 -76401346 + L1MC4 LINE L1 6682 7232 -810 2726 105 3 0 chr4 125927001 125927364 -76400983 - THE1B LTR MaLR 0 364 1 2584 183 70 179 chr4 125927364 125927964 -76400383 + L1MC4 LINE L1 7232 7896 -146 288 304 57 13 chr4 125928022 125928180 -76400167 + L1M4 LINE L1 2869 3033 -3113 * 302 265 31 0 chr4 125928173 125928271 -76400076 + L1PB4 LINE L1 5813 5913 -243 2229 136 32 45 chr4 125928189 125928484 -76399863 + L1MA8 LINE L1 5831 6120 -171 2254 96 3 0 chr4 125928484 125928766 -76399581 + AluSx SINE Alu 2 284 -28 1018 79 8 0 chr4 125928766 125928792 -76399555 + AluSq SINE Alu 2 310 0 2229 136 32 45 chr4 125928792 125928960 -76399387 + L1MA8 LINE L1 6120 6289 -2 820 237 67 76 chr4 125928993 125929428 -76398919 + L1MC4 LINE L1 7390 7820 -222 314 235 76 45 chr4 125929724 125929856 -76398491 - L1ME4a LINE L1 -22 6099 5964 306 245 186 27 chr4 125929907 125930095 -76398252 - L1ME4a LINE L1 -195 5926 5709 25 0 0 0 chr4 125930430 125930455 -76397892 + AT_rich Low_complexity Low_complexity 1 25 0 1286 188 143 8 chr4 125930626 125930801 -76397546 - AluJo SINE Alu -10 302 152 225 0 0 0 chr4 125930801 125930826 -76397521 + (TG)n Simple_repeat Simple_repeat 2 26 0 1286 188 143 8 chr4 125930826 125930916 -76397431 - AluJo SINE Alu -160 152 1 246 288 30 0 chr4 125930941 125931007 -76397340 + L1MC/D LINE L1 5509 5576 -2232 21 0 0 0 chr4 125932711 125932732 -76395615 + GC_rich Low_complexity Low_complexity 1 21 0 210 324 81 0 chr4 125933067 125933141 -76395206 + L2 LINE L2 3148 3227 -45 2020 98 17 7 chr4 125933825 125934121 -76394226 + AluSx SINE Alu 1 299 -13 832 161 0 1 chr4 125935322 125935594 -76392753 + AluJ SINE Alu 7 312 0 225 0 0 0 chr4 125936808 125936833 -76391514 + (TG)n Simple_repeat Simple_repeat 1 25 0 390 307 33 7 chr4 125936904 125937054 -76391293 + MIR SINE MIR 66 219 -43 385 271 50 111 chr4 125937501 125937612 -76390735 - L3 LINE CR1 -4 1573 1457 2199 132 6 3 chr4 125937612 125937923 -76390424 - AluSx SINE Alu 0 312 1 385 271 50 111 chr4 125937923 125938091 -76390256 - L3 LINE CR1 -120 1457 1311 870 160 0 0 chr4 125938358 125938489 -76389858 + FLAM_C SINE Alu 1 131 -2 2813 164 45 24 chr4 125938789 125939403 -76388944 + MER41B LTR ERV1 1 466 -12 476 322 141 20 chr4 125939544 125939848 -76388499 - L3 LINE CR1 -300 1277 937 23 0 0 0 chr4 125940139 125940162 -76388185 + AT_rich Low_complexity Low_complexity 1 23 0 2034 137 7 7 chr4 125940251 125940557 -76387790 - AluSq SINE Alu -7 306 1 450 267 137 53 chr4 125940649 125941080 -76387267 - MLT1L LTR MaLR -7 608 142 409 217 230 33 chr4 125941133 125941285 -76387062 + MER102b DNA MER1_type 150 331 -10 1929 218 98 16 chr4 125941396 125941895 -76386452 - MLT1F LTR MaLR 0 542 3 2371 101 3 0 chr4 125944666 125944974 -76383373 - AluSp SINE Alu -4 309 1 301 287 46 0 chr4 125945288 125945375 -76382972 - MIR SINE MIR -128 134 44 2317 114 10 0 chr4 125945411 125945719 -76382628 - AluSq SINE Alu -2 311 1 254 328 8 57 chr4 125946123 125946245 -76382102 + MIR SINE MIR 5 120 -142 2295 98 3 3 chr4 125946317 125946614 -76381733 - AluSq SINE Alu -16 297 1 207 0 0 0 chr4 125946647 125946670 -76381677 + (TA)n Simple_repeat Simple_repeat 2 24 0 515 208 10 10 chr4 125946740 125946836 -76381511 + AluJ/FLAM SINE Alu 1 96 -216 2402 90 3 6 chr4 125947488 125947799 -76380548 - AluSx SINE Alu -2 310 1 629 224 134 27 chr4 125947808 125948031 -76380316 - L2 LINE L2 -17 3296 3050 1050 183 0 43 chr4 125948170 125948356 -76379991 + AluJo SINE Alu 122 299 -13 1848 160 0 38 chr4 125948357 125948676 -76379671 + AluJo SINE Alu 1 307 -5 1324 154 0 106 chr4 125949373 125949408 -76378939 + AluJb SINE Alu 1 38 -274 4090 78 271 0 chr4 125949408 125950058 -76378289 + LTR12 LTR ERV1 1 826 0 1324 154 0 106 chr4 125950058 125950315 -76378032 + AluJb SINE Alu 38 262 -50 289 253 22 0 chr4 125950969 125951060 -76377287 + LTR33A LTR ERVL 427 519 -4 602 205 0 145 chr4 125951607 125951807 -76376540 + FRAM SINE Alu 3 173 -3 413 253 137 1 chr4 125952616 125952754 -76375593 - MIR SINE MIR -86 122 17 471 272 222 0 chr4 125952931 125953111 -76375236 + MIR SINE MIR 15 234 -28 457 296 52 0 chr4 125953595 125953710 -76374637 - L2 LINE L2 -3 3269 3149 237 245 117 21 chr4 125954812 125954906 -76373441 + MER34B LTR ERV1 5 107 -458 488 275 58 41 chr4 125954996 125955054 -76373293 + MER34B LTR ERV1 270 326 -239 2174 142 60 0 chr4 125955054 125955434 -76372913 + MER57A LTR ERV1 1 403 0 488 275 58 41 chr4 125955434 125955666 -76372681 + MER34B LTR ERV1 326 565 0 1699 145 6 108 chr4 125955976 125956308 -76372039 - AluJb SINE Alu -4 298 1 28 48 0 0 chr4 125956594 125956636 -76371711 + AT_rich Low_complexity Low_complexity 1 42 0 2420 62 0 16 chr4 125956667 125956974 -76371373 - SVA Other Other 0 1386 1085 1869 201 51 33 chr4 125957891 125958378 -76369969 + MLT1D LTR MaLR 4 499 -6 450 208 56 24 chr4 125958593 125958718 -76369629 + LTR40a LTR ERVL 1 129 -390 1828 154 0 0 chr4 125958838 125959129 -76369218 + AluSx SINE Alu 25 315 0 2283 106 29 35 chr4 125959225 125959602 -76368745 - THE1C LTR MaLR 0 375 1 269 247 24 0 chr4 125960256 125960341 -76368006 - L1ME4a LINE L1 -67 6054 5968 40940 52 2 1 chr4 125960535 125966670 -76361677 + L1PA4 LINE L1 11 6152 -3 304 378 26 13 chr4 125967440 125967596 -76360751 - L1ME4a LINE L1 -295 5867 5710 474 297 112 23 chr4 125967714 125968231 -76360116 - L1M3 LINE L1 -628 5552 5002 367 320 49 41 chr4 125968318 125968849 -76359498 - L1M3 LINE L1 -1300 4846 4312 25 51 0 0 chr4 125968851 125968890 -76359457 + AT_rich Low_complexity Low_complexity 1 39 0 2330 95 0 0 chr4 125969253 125969557 -76358790 + AluSx SINE Alu 1 304 -8 297 266 53 110 chr4 125969618 125970073 -76358274 - L1M3 LINE L1 -2197 3949 3521 1543 186 19 19 chr4 125970463 125970770 -76357577 - AluJb SINE Alu -5 307 1 369 43 0 0 chr4 125971105 125971152 -76357195 + (GA)n Simple_repeat Simple_repeat 1 47 0 953 177 30 15 chr4 125971154 125971352 -76356995 - MLT2B3 LTR ERVL -353 201 1 568 289 79 51 chr4 125971354 125971700 -76356647 - L1M3 LINE L1 -2889 3257 2922 2219 123 0 0 chr4 125971700 125972002 -76356345 - AluSq SINE Alu -11 302 1 568 289 79 51 chr4 125972002 125972318 -76356029 - L1M3 LINE L1 -3224 2922 2496 356 219 21 0 chr4 125972433 125972529 -76355818 + Charlie1 DNA MER1_type 2211 2308 -453 1350 124 5 0 chr4 125972535 125972721 -76355626 + AluSx SINE Alu 1 187 -125 1239 158 34 109 chr4 125972925 125973373 -76354974 + Charlie1 DNA MER1_type 2348 2761 0 197 289 0 60 chr4 125973374 125973457 -76354890 - MIR SINE MIR -109 153 76 35 41 0 0 chr4 125973488 125973537 -76354810 + AT_rich Low_complexity Low_complexity 1 49 0 221 353 67 33 chr4 125974265 125974415 -76353932 - MIR SINE MIR -83 179 25 279 274 143 0 chr4 125974682 125974766 -76353581 - L2 LINE L2 -8 3264 3169 312 222 0 0 chr4 125975135 125975198 -76353149 - MLT1I LTR MaLR -3 406 344 546 207 59 7 chr4 125975284 125975419 -76352928 - MLT1I LTR MaLR -233 176 35 227 273 0 0 chr4 125976149 125976204 -76352143 + (CA)n Simple_repeat Simple_repeat 2 56 0 183 129 0 0 chr4 125977649 125977680 -76350667 + (TTG)n Simple_repeat Simple_repeat 2 32 0 548 248 54 96 chr4 125978144 125978190 -76350157 + MLT1H LTR MaLR 62 108 -434 2288 82 0 28 chr4 125978190 125978507 -76349840 + AluY SINE Alu 1 308 -3 548 248 54 96 chr4 125978507 125978790 -76349557 + MLT1H LTR MaLR 108 375 -167 466 343 49 29 chr4 125978926 125979232 -76349115 - L2 LINE L2 -439 2875 2564 2215 131 0 0 chr4 125979278 125979584 -76348763 + AluSc SINE Alu 1 306 -3 634 259 27 55 chr4 125980527 125980747 -76347600 - MIR SINE MIR -13 249 36 478 227 125 0 chr4 125981051 125981179 -76347168 - LTR33 LTR ERVL 0 521 378 256 355 0 11 chr4 125981274 125981367 -76346980 - LTR33 LTR ERVL -364 157 66 2094 105 0 21 chr4 125981371 125981682 -76346665 - AluSg SINE Alu 0 305 1 466 274 139 23 chr4 125981944 125982203 -76346144 + L2 LINE L2 3014 3302 -11 3576 174 28 60 chr4 125982703 125982838 -76345509 + LTR39 LTR ERV1 59 197 -586 914 57 0 16 chr4 125982838 125982962 -76345385 + L1PA4 LINE L1 6034 6155 0 3576 174 28 60 chr4 125982962 125983259 -76345088 + LTR39 LTR ERV1 197 459 -324 2094 144 0 0 chr4 125983259 125983558 -76344789 - AluSx SINE Alu -13 299 1 3576 174 28 60 chr4 125983558 125983872 -76344475 + LTR39 LTR ERV1 459 782 -1 461 252 61 20 chr4 125983879 125984026 -76344321 + MIR SINE MIR 46 198 -64 271 205 64 0 chr4 125985254 125985332 -76343015 + MIR SINE MIR 102 184 -78 288 255 92 35 chr4 125986015 125986156 -76342191 - L2 LINE L2 -1 3271 3123 2299 103 103 23 chr4 125986539 125986603 -76341744 - MSTA LTR MaLR 0 428 371 2216 114 27 0 chr4 125986603 125986723 -76341624 + AluSg SINE Alu 1 116 -194 207 0 0 0 chr4 125986723 125986746 -76341601 + (CA)n Simple_repeat Simple_repeat 2 24 0 2216 114 27 0 chr4 125986746 125986924 -76341423 + AluSg SINE Alu 116 307 -3 2299 103 103 23 chr4 125986924 125987255 -76341092 - MSTA LTR MaLR -57 371 1 2432 93 0 3 chr4 125988091 125988401 -76339946 + AluSx SINE Alu 1 309 -3 2131 126 0 3 chr4 125989017 125989311 -76339036 + AluSq SINE Alu 1 293 -20 1356 225 61 40 chr4 125989312 125989757 -76338590 + LTR37B LTR ERV1 15 468 0 221 259 43 86 chr4 125990244 125990383 -76337964 - MIR SINE MIR -49 159 25 798 94 0 0 chr4 125990383 125990500 -76337847 + (TCCC)n Simple_repeat Simple_repeat 4 120 0 601 187 181 7 chr4 125990504 125990659 -76337688 - L2 LINE L2 -14 3299 3118 288 0 0 0 chr4 125991234 125991266 -76337081 + (CA)n Simple_repeat Simple_repeat 2 33 0 546 238 30 30 chr4 125991842 125992010 -76336337 + MER5B DNA MER1_type 11 178 0 306 297 0 0 chr4 125992235 125992326 -76336021 - MIR SINE MIR -108 154 64 1020 170 0 6 chr4 125993562 125993733 -76334614 - FRAM SINE Alu -9 167 1 1761 219 39 44 chr4 125993881 125994338 -76334009 - MLT1E3 LTR MaLR -9 615 161 302 262 93 28 chr4 125994568 125994675 -76333672 + MIR SINE MIR 75 188 -74 414 282 182 29 chr4 125994843 125995052 -76333295 + L1M4 LINE L1 5534 5683 -438 180 236 191 34 chr4 125995630 125995719 -76332628 + L2 LINE L2 3167 3269 -3 4761 97 46 39 chr4 125995898 125996310 -76332037 - MER4E LTR ERV1 -10 769 348 2229 107 0 7 chr4 125996310 125996608 -76331739 + AluSg SINE Alu 1 296 -14 4761 97 46 39 chr4 125996608 125996959 -76331388 - MER4E LTR ERV1 -431 348 1 269 300 25 33 chr4 125997201 125997321 -76331026 + MIR SINE MIR 20 138 -124 259 379 39 22 chr4 125997644 125997826 -76330521 + MER5A DNA MER1_type 2 186 -3 444 283 82 6 chr4 125997971 125998130 -76330217 - MLT1K LTR MaLR -16 572 402 4009 99 30 59 chr4 125998246 125998909 -76329438 - LTR9B LTR ERV1 0 644 1 2132 122 7 3 chr4 125999915 126000218 -76328129 - AluSq SINE Alu -9 304 1 2292 107 0 0 chr4 126001504 126001804 -76326543 - AluSq SINE Alu -13 300 1 24 53 0 0 chr4 126002010 126002048 -76326299 + AT_rich Low_complexity Low_complexity 1 38 0 1492 188 0 11 chr4 126002048 126002314 -76326033 - AluJo SINE Alu -20 292 30 2048 134 0 26 chr4 126003101 126003408 -76324939 - AluSx SINE Alu -13 299 1 467 336 78 23 chr4 126003498 126003715 -76324632 - MIR SINE MIR -14 248 20 1320 165 49 22 chr4 126003865 126003983 -76324364 + AluJb SINE Alu 1 114 -198 189 94 0 0 chr4 126003983 126004015 -76324332 + (CTAA)n Simple_repeat Simple_repeat 1 32 0 1320 165 49 22 chr4 126004015 126004163 -76324184 + AluJb SINE Alu 114 274 -38 603 220 25 0 chr4 126004388 126004547 -76323800 + L1MB3 LINE L1 6020 6182 -1 231 303 40 30 chr4 126005435 126005534 -76322813 - L2 LINE L2 -6 3266 3167 279 0 0 0 chr4 126005930 126005961 -76322386 + (TG)n Simple_repeat Simple_repeat 1 31 0 * 348 43 0 0 chr4 126005960 126006006 -76322341 + (GA)n Simple_repeat Simple_repeat 1 46 0 641 209 33 7 chr4 126007912 126008065 -76320282 + L1M4 LINE L1 5668 5824 -350 677 105 11 0 chr4 126008066 126008161 -76320186 + AluS SINE Alu 2 97 -215 2436 63 7 0 chr4 126008554 126008853 -76319494 + AluY SINE Alu 1 301 -10 810 156 81 0 chr4 126010263 126010436 -76317911 + MSTA LTR MaLR 1 187 -241 242 305 102 54 chr4 126010637 126010731 -76317616 - L2 LINE L2 -1009 2305 2217 1021 256 111 28 chr4 126010731 126011153 -76317194 - MSTB2 LTR MaLR 0 457 1 242 305 102 54 chr4 126011153 126011412 -76316935 - L2 LINE L2 -1097 2217 1935 2093 103 3 33 chr4 126013349 126013651 -76314696 + AluSg SINE Alu 3 295 -15 30 45 0 0 chr4 126013656 126013700 -76314647 + AT_rich Low_complexity Low_complexity 1 44 0 24 0 0 0 chr4 126014232 126014256 -76314091 + AT_rich Low_complexity Low_complexity 1 24 0 584 103 0 11 chr4 126014265 126014352 -76313995 + AluY SINE Alu 1 86 -224 1418 126 0 9 chr4 126015617 126015832 -76312515 - LOR1b LTR ERV1 -248 213 1 1733 176 7 14 chr4 126016245 126016540 -76311807 - AluJo SINE Alu -19 293 1 422 285 97 16 chr4 126016658 126016844 -76311503 - L1MCc LINE L1 -6205 218 18 3070 12 0 0 chr4 126017082 126017450 -76310897 + SVA Other Other 1045 1412 0 377 207 35 11 chr4 126017464 126017551 -76310796 + MIR SINE MIR 108 196 -66 504 221 10 10 chr4 126017611 126017715 -76310632 + L2 LINE L2 3199 3302 -11 620 194 0 0 chr4 126017927 126018025 -76310322 + FLAM_A SINE Alu 13 110 -32 889 257 55 4 chr4 126019257 126019514 -76308833 + L2 LINE L2 2026 2295 -1019 1210 286 17 14 chr4 126019532 126019888 -76308459 + L1MEc LINE L1 44 400 -5996 425 231 0 51 chr4 126019894 126020011 -76308336 + L1MEc LINE L1 484 594 -5802 602 222 30 0 chr4 126020013 126020148 -76308199 - MER58B DNA MER1_type -5 336 198 331 253 86 66 chr4 126020620 126020877 -76307470 + LTR16C LTR ERVL 168 429 -62 219 36 0 0 chr4 126021034 126021062 -76307285 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1914 148 7 3 chr4 126021708 126022013 -76306334 + AluSx SINE Alu 1 306 -6 451 194 153 0 chr4 126022373 126022471 -76305876 - MER44D DNA MER2_type -226 383 1 2123 138 0 0 chr4 126023368 126023665 -76304682 + AluSx SINE Alu 1 297 -15 24 0 0 0 chr4 126024172 126024196 -76304151 + AT_rich Low_complexity Low_complexity 1 24 0 604 65 0 75 chr4 126024343 126024436 -76303911 + AluSc SINE Alu 213 298 -11 225 0 0 0 chr4 126024436 126024461 -76303886 + (TA)n Simple_repeat Simple_repeat 2 26 0 594 243 0 0 chr4 126024475 126024586 -76303761 + MLT1F1 LTR MaLR 23 133 -434 648 205 39 0 chr4 126024587 126024714 -76303633 + AluJo SINE Alu 3 134 -178 1821 206 118 8 chr4 126024743 126025141 -76303206 + MLT1F1 LTR MaLR 126 567 0 621 257 166 64 chr4 126025829 126026233 -76302114 - MLT1J1 LTR MaLR -1 445 1 1671 182 14 0 chr4 126026614 126026894 -76301453 + AluJo SINE Alu 1 284 -28 21 0 0 0 chr4 126027634 126027655 -76300692 + AT_rich Low_complexity Low_complexity 1 21 0 381 22 0 0 chr4 126028813 126028859 -76299488 + (TC)n Simple_repeat Simple_repeat 1 46 0 291 28 0 0 chr4 126028858 126028894 -76299453 + (CA)n Simple_repeat Simple_repeat 1 36 0 * 237 303 40 30 chr4 126029285 126029384 -76298963 + L2 LINE L2 3167 3266 -6 318 247 39 0 chr4 126030256 126030278 -76298069 + AluYb8 SINE Alu 110 134 -174 2131 121 10 10 chr4 126030278 126030576 -76297771 + AluSx SINE Alu 1 298 -14 2172 112 0 10 chr4 126030676 126030970 -76297377 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr4 126030974 126030995 -76297352 + AT_rich Low_complexity Low_complexity 1 21 0 313 171 85 24 chr4 126032628 126032710 -76295637 + L1M4 LINE L1 2838 2924 -3222 278 270 88 22 chr4 126032713 126032850 -76295497 + L1M4 LINE L1 2982 3127 -3019 1590 278 62 43 chr4 126032895 126033833 -76294514 + L2 LINE L2 2358 3312 -1 2181 121 0 6 chr4 126034072 126034386 -76293961 - AluSx SINE Alu 0 312 1 21 0 0 0 chr4 126034454 126034475 -76293872 + AT_rich Low_complexity Low_complexity 1 21 0 1007 108 16 70 chr4 126034580 126034765 -76293582 - AluY SINE Alu -17 294 120 2024 134 3 16 chr4 126035555 126035862 -76292485 - AluSx SINE Alu -9 303 1 22 0 0 0 chr4 126035916 126035938 -76292409 + AT_rich Low_complexity Low_complexity 1 22 0 2436 64 0 0 chr4 126035938 126036234 -76292113 - AluY SINE Alu -15 296 1 486 49 0 0 chr4 126036249 126036310 -76292037 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 1189 251 80 44 chr4 126036991 126037493 -76290854 - L1ME1 LINE L1 -5 6161 5642 182 290 65 81 chr4 126037667 126037791 -76290556 + L2 LINE L2 3142 3263 -9 2551 47 3 0 chr4 126038368 126038668 -76289679 + AluY SINE Alu 1 301 -10 23 68 0 0 chr4 126039742 126039786 -76288561 + AT_rich Low_complexity Low_complexity 1 44 0 953 148 0 7 chr4 126040707 126040849 -76287498 - AluSg/x SINE Alu -15 295 155 22 0 0 0 chr4 126042601 126042623 -76285724 + AT_rich Low_complexity Low_complexity 1 22 0 10428 124 30 26 chr4 126043133 126044109 -76284238 - Tigger1 DNA MER2_type -7 2411 1441 2461 79 0 0 chr4 126044109 126044412 -76283935 + AluY SINE Alu 1 303 -8 2356 82 0 0 chr4 126044413 126044707 -76283640 + AluY SINE Alu 1 294 -17 10428 124 30 26 chr4 126044707 126045595 -76282752 - Tigger1 DNA MER2_type -976 1442 536 614 265 126 43 chr4 126045936 126046166 -76282181 + MIR SINE MIR 4 252 -10 2224 80 3 0 chr4 126046486 126046772 -76281575 + AluSx SINE Alu 1 287 -25 347 248 9 18 chr4 126046982 126047091 -76281256 + L1MC4 LINE L1 7789 7896 -146 431 217 18 96 chr4 126048740 126048841 -76279506 - MER103 DNA DNA -6 160 75 2610 49 0 0 chr4 126048841 126049147 -76279200 + AluY SINE Alu 1 306 -5 431 217 18 96 chr4 126049147 126049211 -76279136 - MER103 DNA DNA -91 75 8 362 264 47 28 chr4 126049312 126049524 -76278823 + L1MC5 LINE L1 7580 7795 -166 2132 148 0 0 chr4 126050161 126050465 -76277882 - AluSx SINE Alu -8 304 1 608 300 19 38 chr4 126050756 126050966 -76277381 + MIR SINE MIR 9 214 -48 1924 129 11 0 chr4 126050972 126051289 -76277058 - AluSx SINE Alu 0 320 1 2787 142 19 20 chr4 126051408 126051895 -76276452 - LTR45B LTR ERV1 -2 487 2 1579 176 3 20 chr4 126051988 126052283 -76276064 - AluSx SINE Alu -14 298 9 426 135 104 21 chr4 126052461 126052557 -76275790 - L1ME LINE L1 -510 5654 5551 292 277 99 0 chr4 126053647 126053748 -76274599 + MIR SINE MIR 116 226 -36 230 260 0 50 chr4 126054336 126054436 -76273911 + MER87 LTR ERV1 250 344 -197 220 186 51 0 chr4 126056006 126056065 -76272282 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 2934 107 0 9 chr4 126056130 126056561 -76271786 - L1PB3 LINE L1 -10 6144 5718 185 275 29 29 chr4 126056688 126056757 -76271590 + MIR3 SINE MIR 4 72 -136 1301 44 0 6 chr4 126058169 126058350 -76269997 - SVA Other Other -493 893 714 2141 119 0 0 chr4 126059319 126059604 -76268743 - AluSc SINE Alu -24 285 1 697 119 0 1 chr4 126060072 126060187 -76268160 + L1PB1 LINE L1 5866 5979 -172 324 307 20 0 chr4 126061628 126061729 -76266618 + MLT1F1 LTR MaLR 116 218 -349 275 310 0 0 chr4 126061773 126061844 -76266503 - L2 LINE L2 -16 3297 3227 1712 181 18 0 chr4 126061848 126062124 -76266223 + AluJo SINE Alu 1 281 -31 180 111 0 0 chr4 126062125 126062152 -76266195 + (GGGGA)n Simple_repeat Simple_repeat 4 30 0 2451 51 10 0 chr4 126062591 126062885 -76265462 + AluY SINE Alu 1 297 -14 1115 192 58 5 chr4 126062935 126063159 -76265188 - MER8 DNA MER2_type 0 239 4 469 333 24 29 chr4 126063336 126063543 -76264804 - MIR3 SINE MIR 0 208 3 688 239 193 5 chr4 126063688 126063901 -76264446 - MIR SINE MIR -5 257 5 267 305 74 0 chr4 126064218 126064313 -76264034 + MIR SINE MIR 43 144 -64 332 356 67 13 chr4 126064387 126064626 -76263721 + L1MC4 LINE L1 7207 7458 -584 2552 169 51 43 chr4 126064641 126065025 -76263322 - L1MB8 LINE L1 -2 6176 5797 186 103 0 0 chr4 126065025 126065054 -76263293 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2105 122 4 4 chr4 126065054 126065333 -76263014 - AluSx SINE Alu -28 284 6 2552 169 51 43 chr4 126065333 126065573 -76262774 - L1MB8 LINE L1 -380 5798 5546 627 261 86 63 chr4 126065685 126065820 -76262527 + L1MC4 LINE L1 7494 7624 -418 2168 123 0 3 chr4 126065820 126066121 -76262226 + AluSx SINE Alu 1 300 -12 627 261 86 63 chr4 126066121 126066522 -76261825 + L1MC4 LINE L1 7624 8042 0 26 30 0 0 chr4 126067462 126067495 -76260852 + AT_rich Low_complexity Low_complexity 1 33 0 202 209 0 0 chr4 126067830 126067873 -76260474 + A-rich Low_complexity Low_complexity 3 45 0 374 304 49 0 chr4 126068410 126068512 -76259835 + L2 LINE L2 3157 3263 -9 2233 96 3 13 chr4 126069781 126070093 -76258254 + AluSc SINE Alu 1 309 0 240 203 139 0 chr4 126070575 126070654 -76257693 - MIR3 SINE MIR -11 197 108 2191 120 0 0 chr4 126070790 126071082 -76257265 - AluSx SINE Alu -20 292 1 24 53 0 0 chr4 126071200 126071238 -76257109 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr4 126071402 126071428 -76256919 + AT_rich Low_complexity Low_complexity 1 26 0 1651 160 69 3 chr4 126072126 126072414 -76255933 + AluSp SINE Alu 1 307 -6 719 185 33 33 chr4 126072571 126072722 -76255625 - FRAM SINE Alu -20 156 6 189 0 0 0 chr4 126073017 126073038 -76255309 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 366 302 245 6 chr4 126073366 126073525 -76254822 + MIR3 SINE MIR 6 202 -6 1640 167 21 30 chr4 126077297 126077632 -76250715 + MER2 DNA MER2_type 1 332 -13 939 179 113 36 chr4 126078512 126078786 -76249561 - L1MA7 LINE L1 0 6291 5997 227 114 0 45 chr4 126078969 126079013 -76249334 + L2 LINE L2 3272 3313 0 30 27 0 0 chr4 126079038 126079075 -76249272 + AT_rich Low_complexity Low_complexity 1 37 0 204 250 0 0 chr4 126079615 126079679 -76248668 + GA-rich Low_complexity Low_complexity 3 66 0 2264 115 0 0 chr4 126080163 126080458 -76247889 + AluSc SINE Alu 1 295 -14 2297 98 0 0 chr4 126080570 126080865 -76247482 + AluSx SINE Alu 1 295 -17 297 240 31 0 chr4 126081486 126081582 -76246765 + T-rich Low_complexity Low_complexity 3 101 0 270 335 144 16 chr4 126081768 126081962 -76246385 - MIR SINE MIR -10 252 34 22 0 0 0 chr4 126082320 126082342 -76246005 + AT_rich Low_complexity Low_complexity 1 22 0 2143 132 3 0 chr4 126082415 126082718 -76245629 + AluSx SINE Alu 1 304 -8 409 247 0 0 chr4 126083114 126083211 -76245136 + AluSg/x SINE Alu 200 296 -6 1402 225 89 20 chr4 126083340 126083744 -76244603 + MER69B DNA AcHobo 547 978 -248 3441 112 11 63 chr4 126083745 126084364 -76243983 + L1MA8 LINE L1 5342 5928 -363 2023 122 3 33 chr4 126084430 126084734 -76243613 + AluSq SINE Alu 1 295 -18 988 223 36 5 chr4 126084757 126084977 -76243370 - MER87 LTR ERV1 -83 458 232 1622 166 50 3 chr4 126084977 126085260 -76243087 - AluJo SINE Alu -12 300 5 1757 133 43 46 chr4 126085438 126085611 -76242736 + L1MA8 LINE L1 5925 6097 -194 2112 124 0 32 chr4 126085611 126085926 -76242421 + AluSx SINE Alu 1 305 -7 1757 133 43 46 chr4 126085926 126086120 -76242227 + L1MA8 LINE L1 6097 6291 0 613 189 36 36 chr4 126086150 126086346 -76242001 + MER69B DNA AcHobo 1027 1222 -4 1391 211 10 24 chr4 126086704 126087002 -76241345 - AluJb SINE Alu -18 294 1 195 325 79 9 chr4 126087033 126087147 -76241200 + MIR SINE MIR 47 168 -94 1584 178 16 41 chr4 126087147 126087467 -76240880 + AluJo SINE Alu 1 312 0 417 284 0 0 chr4 126087538 126087686 -76240661 + (TA)n Simple_repeat Simple_repeat 2 149 0 2187 98 3 3 chr4 126088188 126088474 -76239873 + AluSc SINE Alu 1 286 -23 215 220 76 102 chr4 126089002 126089120 -76239227 - MIR3 SINE MIR -25 183 69 380 285 116 31 chr4 126089177 126089392 -76238955 + MIR SINE MIR 10 241 -21 21 0 0 0 chr4 126089484 126089505 -76238842 + AT_rich Low_complexity Low_complexity 1 21 0 442 191 0 0 chr4 126089506 126089590 -76238757 - LTR37A LTR ERV1 -59 367 284 1125 212 77 31 chr4 126089732 126090058 -76238289 + MER2 DNA MER2_type 4 344 0 22 0 0 0 chr4 126091256 126091278 -76237069 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 126091330 126091358 -76236989 + AT_rich Low_complexity Low_complexity 1 28 0 606 214 8 16 chr4 126091363 126091489 -76236858 - FLAM_A SINE Alu -8 125 1 447 309 111 57 chr4 126092171 126092750 -76235597 - MLT1L LTR MaLR -1 614 5 840 249 73 9 chr4 126093529 126093762 -76234585 - MIR SINE MIR 0 262 15 22 80 0 0 chr4 126095146 126095196 -76233151 + AT_rich Low_complexity Low_complexity 1 50 0 351 224 48 102 chr4 126096068 126096215 -76232132 - MIR SINE MIR -21 241 103 23 0 0 0 chr4 126097233 126097256 -76231091 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 126099679 126099701 -76228646 + AT_rich Low_complexity Low_complexity 1 22 0 2638 40 0 0 chr4 126100585 126100885 -76227462 - AluY SINE Alu -11 300 1 325 256 176 23 chr4 126101027 126101203 -76227144 + MARNA DNA Mariner 58 260 -326 351 82 0 0 chr4 126105104 126105153 -76223194 - MADE1 DNA Mariner -31 49 1 399 310 17 26 chr4 126105220 126105336 -76223011 + MER5A DNA MER1_type 9 123 -66 264 140 35 18 chr4 126105427 126105484 -76222863 + Charlie7 DNA MER1_type 44 101 -2511 257 246 49 42 chr4 126105470 126105612 -76222735 + Charlie7 DNA MER1_type 2434 2576 -36 * 494 298 111 22 chr4 126105822 126106047 -76222300 + MIR SINE MIR 18 262 0 281 227 102 0 chr4 126106262 126106350 -76221997 - MER94 DNA DNA -36 98 2 283 316 65 7 chr4 126106925 126107064 -76221283 - L2 LINE L2 0 3313 3167 200 357 65 8 chr4 126107419 126107617 -76220730 - L2 LINE L2 -340 2974 2715 466 307 90 34 chr4 126107697 126107791 -76220556 - L2 LINE L2 -1009 2305 2218 2042 169 115 24 chr4 126107791 126108210 -76220137 - MSTB2 LTR MaLR 0 457 1 466 307 90 34 chr4 126108210 126108470 -76219877 - L2 LINE L2 -1096 2218 1931 656 204 25 0 chr4 126110056 126110213 -76218134 - L1MB3 LINE L1 -3 6180 6020 532 257 188 33 chr4 126110221 126110466 -76217881 + L2 LINE L2 3031 3313 0 2122 100 10 7 chr4 126111173 126111482 -76216865 + AluSg SINE Alu 1 310 0 444 98 0 98 chr4 126111502 126111594 -76216753 - L1MB5 LINE L1 -6 6168 6086 813 166 0 12 chr4 126111694 126111857 -76216490 + SVA Other Other 1209 1369 -17 336 24 0 0 chr4 126111857 126111898 -76216449 + (TA)n Simple_repeat Simple_repeat 1 41 0 356 273 30 38 chr4 126111916 126112048 -76216299 + MIR SINE MIR 110 240 -22 471 255 9 9 chr4 126112059 126112165 -76216182 + L2 LINE L2 3197 3302 -11 506 235 0 0 chr4 126112378 126112476 -76215871 + FLAM_A SINE Alu 13 110 -32 235 284 183 18 chr4 126112841 126113010 -76215337 + MIR SINE MIR 46 242 -20 1655 194 134 9 chr4 126113024 126113473 -76214874 - Charlie4a DNA MER1_type -3 505 1 211 269 0 13 chr4 126114366 126114444 -76213903 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 1521 189 26 10 chr4 126114688 126114995 -76213352 + MER58B DNA MER1_type 30 341 0 276 210 0 16 chr4 126116448 126116510 -76211837 - Charlie4 DNA MER1_type -1858 103 43 268 210 0 16 chr4 126116678 126116740 -76211607 - Charlie4 DNA MER1_type -1858 103 43 721 268 120 27 chr4 126116799 126117102 -76211245 + L1M4 LINE L1 5023 5297 -887 1889 119 0 0 chr4 126117102 126117362 -76210985 + AluSx SINE Alu 47 306 -6 721 268 120 27 chr4 126117362 126117759 -76210588 + L1M4 LINE L1 5297 5788 -396 2382 91 0 0 chr4 126118654 126118961 -76209386 - AluSc SINE Alu -2 307 1 902 227 36 23 chr4 126119250 126119470 -76208877 + MER58A DNA MER1_type 2 224 0 294 194 60 0 chr4 126119622 126119689 -76208658 + MER58A DNA MER1_type 154 224 0 2421 71 0 0 chr4 126120948 126121244 -76207103 + AluY SINE Alu 1 296 -15 1522 199 36 4 chr4 126121661 126121938 -76206409 + AluJo SINE Alu 3 288 -24 225 333 49 10 chr4 126122129 126122231 -76206116 - L2 LINE L2 -16 3297 3192 341 308 77 77 chr4 126123151 126123320 -76205027 - L2 LINE L2 -111 3161 2993 202 289 0 0 chr4 126123643 126123688 -76204659 - L2 LINE L2 0 3272 3228 21 0 0 0 chr4 126124821 126124842 -76203505 + AT_rich Low_complexity Low_complexity 1 21 0 1586 143 4 41 chr4 126124959 126125225 -76203122 - AluJb SINE Alu -56 256 1 22 0 0 0 chr4 126127927 126127949 -76200398 + AT_rich Low_complexity Low_complexity 1 22 0 540 214 179 35 chr4 126232467 126232668 -76095679 + MIR SINE MIR 4 233 -29 27 29 0 0 chr4 126233263 126233297 -76095050 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr4 126233433 126233456 -76094891 + AT_rich Low_complexity Low_complexity 1 23 0 798 165 127 101 chr4 126234198 126234359 -76093988 + MER69 DNA AcHobo 2129 2284 -242 3093 72 38 2 chr4 126234359 126234777 -76093570 + L1PA11 LINE L1 5737 6169 -5 798 165 127 101 chr4 126234777 126235002 -76093345 + MER69 DNA AcHobo 2284 2525 -1 3175 185 37 59 chr4 126235482 126237073 -76091274 + L1PB4 LINE L1 4716 6326 -8 940 196 21 22 chr4 126237569 126237806 -76090541 + MLT2B1 LTR ERVL 12 273 -141 202 246 62 31 chr4 126238010 126238075 -76090272 - MIR SINE MIR -156 106 40 292 253 273 20 chr4 126238530 126238680 -76089667 - MIR3 SINE MIR -3 205 18 288 0 0 0 chr4 126238825 126238857 -76089490 + (CA)n Simple_repeat Simple_repeat 2 33 0 216 154 51 0 chr4 126238921 126238960 -76089387 + GA-rich Low_complexity Low_complexity 2 42 0 989 183 6 0 chr4 126239522 126239691 -76088656 - AluJb SINE Alu -8 304 135 1361 167 53 53 chr4 126239858 126240157 -76088190 - AluJo SINE Alu -13 299 1 1942 154 3 13 chr4 126240226 126240532 -76087815 + AluJo SINE Alu 1 303 -9 214 341 0 12 chr4 126240992 126241074 -76087273 + GA-rich Low_complexity Low_complexity 2 82 0 1828 173 3 0 chr4 126241490 126241785 -76086562 - AluJo SINE Alu -16 296 1 2401 71 3 0 chr4 126242501 126242796 -76085551 - AluY SINE Alu -15 296 1 210 200 22 0 chr4 126242925 126242970 -76085377 + L2 LINE L2 3210 3255 -17 897 238 180 59 chr4 126243185 126243599 -76084748 - L2 LINE L2 0 3313 2779 567 0 0 0 chr4 126243599 126243662 -76084685 + (TG)n Simple_repeat Simple_repeat 2 64 0 897 238 180 59 chr4 126243662 126243856 -76084491 - L2 LINE L2 -534 2779 2610 1989 88 59 4 chr4 126244986 126245259 -76083088 - AluSp SINE Alu -25 288 1 278 265 17 77 chr4 126245651 126245768 -76082579 - L2 LINE L2 -10 3303 3194 2411 76 3 0 chr4 126246315 126246645 -76081702 - L1P4 LINE L1 -382 5786 5456 1169 93 0 6 chr4 126246647 126246808 -76081539 + L1PA10 LINE L1 5998 6157 -11 243 325 50 67 chr4 126246865 126246985 -76081362 - MIR SINE MIR -73 135 18 21 36 0 0 chr4 126247017 126247045 -76081302 + AT_rich Low_complexity Low_complexity 1 28 0 210 167 0 0 chr4 126247159 126247195 -76081152 + T-rich Low_complexity Low_complexity 1 36 0 227 211 0 19 chr4 126247208 126247260 -76081087 - AluJ/monomer SINE Alu -251 51 1 529 263 57 26 chr4 126247311 126247480 -76080867 + L2 LINE L2 3112 3289 -24 2382 74 0 3 chr4 126247480 126247777 -76080570 - AluY SINE Alu -15 296 1 529 263 57 26 chr4 126247777 126247801 -76080546 + L2 LINE L2 3289 3311 -2 1939 169 8 21 chr4 126248029 126248147 -76080200 - L1PB4 LINE L1 0 6156 6038 2725 201 25 9 chr4 126248147 126248695 -76079652 + MER41D LTR ERV1 1 557 0 1939 169 8 21 chr4 126248695 126248949 -76079398 - L1PB4 LINE L1 -118 6038 5789 253 172 0 81 chr4 126248999 126249086 -76079261 - L1PB4 LINE L1 -389 5767 5688 1224 244 3 27 chr4 126249186 126249481 -76078866 - AluJo SINE Alu -14 288 1 196 348 11 22 chr4 126249518 126249607 -76078740 - L2 LINE L2 -62 3251 3164 187 356 143 39 chr4 126249786 126250016 -76078331 - L2 LINE L2 -407 2907 2654 1133 156 8 84 chr4 126250031 126250268 -76078079 - MER20 DNA MER1_type 0 219 1 2341 81 0 3 chr4 126250303 126250598 -76077749 + AluY SINE Alu 1 294 -17 293 335 67 54 chr4 126251488 126251801 -76076546 + L2 LINE L2 2831 3147 -125 208 147 0 0 chr4 126252074 126252108 -76076239 + (A)n Simple_repeat Simple_repeat 1 34 0 291 293 53 30 chr4 126252310 126252443 -76075904 - MIR SINE MIR -43 219 84 556 330 26 44 chr4 126253648 126253990 -76074357 - MLT1I LTR MaLR -2 407 72 385 268 70 13 chr4 126254131 126254288 -76074059 - MLT1H LTR MaLR -2 547 382 1036 211 146 43 chr4 126254322 126254441 -76073906 - MLT1D LTR MaLR 0 505 400 2591 125 65 0 chr4 126254441 126254840 -76073507 + MSTC LTR MaLR 1 425 -3 1036 211 146 43 chr4 126254840 126255118 -76073229 - MLT1D LTR MaLR -105 400 67 3693 147 50 32 chr4 126255118 126255878 -76072469 - LTR1 LTR ERV1 0 785 12 307 147 0 88 chr4 126255894 126255962 -76072385 - MLT1D LTR MaLR -564 62 1 1172 225 46 0 chr4 126256024 126256286 -76072061 - MLT1H LTR MaLR -264 285 12 1557 160 76 53 chr4 126256436 126256793 -76071554 - MLT2D LTR ERVL -49 365 1 1707 255 37 26 chr4 126256838 126257417 -76070930 + L2 LINE L2 1632 2185 -1129 948 196 5 16 chr4 126257420 126257604 -76070743 + MER5A DNA MER1_type 7 188 -1 223 281 244 0 chr4 126257604 126257684 -76070663 + L2 LINE L2 2178 2277 -1037 201 74 0 0 chr4 126258387 126258414 -76069933 + (T)n Simple_repeat Simple_repeat 1 27 0 205 280 133 0 chr4 126258486 126258561 -76069786 - L2 LINE L2 -5 3267 3183 351 325 73 73 chr4 126258805 126259202 -76069145 - L2 LINE L2 -1801 1513 1117 43 0 0 0 chr4 126259669 126259712 -76068635 + AT_rich Low_complexity Low_complexity 1 43 0 243 258 15 0 chr4 126263840 126263906 -76064441 - MIR SINE MIR -27 235 169 515 196 155 14 chr4 126266887 126267035 -76061312 + MER63A DNA MER1_type 2 170 -40 2250 94 3 0 chr4 126270241 126270527 -76057820 + AluSp SINE Alu 16 302 -11 26 82 0 0 chr4 126270598 126270659 -76057688 + AT_rich Low_complexity Low_complexity 1 61 0 2096 125 0 3 chr4 126273423 126273720 -76054627 - AluY SINE Alu -15 296 1 768 202 55 83 chr4 126273901 126274075 -76054272 - L1ME1 LINE L1 -324 5842 5677 2186 112 3 14 chr4 126274075 126274371 -76053976 - AluSx SINE Alu -19 293 1 768 202 55 83 chr4 126274371 126274414 -76053933 - L1ME1 LINE L1 -489 5677 5634 565 257 87 43 chr4 126274455 126274731 -76053616 - L1ME1 LINE L1 -1112 5034 4747 33 0 0 0 chr4 126275667 126275700 -76052647 + AT_rich Low_complexity Low_complexity 1 33 0 255 213 80 0 chr4 126275729 126275804 -76052543 - MLT1J LTR MaLR -40 471 391 779 265 25 34 chr4 126276718 126277065 -76051282 + L2 LINE L2 2700 3045 -268 915 285 33 39 chr4 126277065 126277524 -76050823 - LTR16B LTR ERVL -2 462 7 705 234 124 25 chr4 126277817 126278018 -76050329 - MIR SINE MIR -15 247 27 575 331 53 34 chr4 126278075 126278580 -76049767 + L2 LINE L2 2243 2757 -557 322 227 125 23 chr4 126278713 126278841 -76049506 + L2 LINE L2 2941 3081 -191 1380 213 40 9 chr4 126278920 126279249 -76049098 - MER58B DNA MER1_type -2 339 1 349 330 59 8 chr4 126279249 126279367 -76048980 + L2 LINE L2 3148 3271 -1 238 211 0 70 chr4 126279365 126279422 -76048925 - MIR SINE MIR -170 92 40 * 22 0 0 0 chr4 126279676 126279698 -76048649 + AT_rich Low_complexity Low_complexity 1 22 0 2510 43 0 3 chr4 126280525 126280826 -76047521 - AluY SINE Alu -11 300 1 808 189 59 0 chr4 126281260 126281413 -76046934 - FRAM SINE Alu -4 162 1 346 353 88 42 chr4 126282400 126282856 -76045491 - L1M2 LINE L1 -5849 1000 524 334 352 9 0 chr4 126283930 126284035 -76044312 - MIR SINE MIR -62 146 41 22 0 0 0 chr4 126284056 126284078 -76044269 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr4 126285233 126285270 -76043077 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr4 126285720 126285750 -76042597 + AT_rich Low_complexity Low_complexity 1 30 0 482 285 111 12 chr4 126285755 126285927 -76042420 - MIR SINE MIR -26 236 48 636 152 0 0 chr4 126286261 126286373 -76041974 - AluSg/x SINE Alu -13 297 186 1659 98 0 0 chr4 126286373 126286588 -76041759 - AluSq SINE Alu -94 219 5 416 330 83 67 chr4 126286736 126286791 -76041556 + L2 LINE L2 2222 2275 -1039 1357 91 95 0 chr4 126286791 126287001 -76041346 + MER30 DNA MER1_type 1 230 0 416 330 83 67 chr4 126287001 126287188 -76041159 + L2 LINE L2 2275 2457 -857 1867 152 7 23 chr4 126287188 126287490 -76040857 + AluSx SINE Alu 5 301 -11 416 330 83 67 chr4 126287490 126287725 -76040622 + L2 LINE L2 2457 2708 -606 422 136 0 68 chr4 126287867 126287970 -76040377 - L1MA8 LINE L1 -6 6285 6190 34 0 0 0 chr4 126288038 126288072 -76040275 + AT_rich Low_complexity Low_complexity 1 34 0 762 153 0 0 chr4 126288114 126288232 -76040115 - FLAM_C SINE Alu -15 118 1 203 300 8 161 chr4 126288266 126288533 -76039814 - L3b LINE CR1 -224 1359 1134 415 316 70 6 chr4 126288766 126288924 -76039423 - MIR3 SINE MIR -25 183 16 1812 168 7 3 chr4 126289987 126290285 -76038062 + AluJo SINE Alu 1 299 -13 292 271 105 24 chr4 126291273 126291412 -76036935 + MIR SINE MIR 2 148 -63 1895 156 7 10 chr4 126291561 126291856 -76036491 + AluJb SINE Alu 2 295 -17 250 294 22 22 chr4 126292325 126292417 -76035930 - MIR3 SINE MIR -41 167 76 207 237 68 17 chr4 126292422 126292481 -76035866 + MIR SINE MIR 32 93 -115 2367 96 0 3 chr4 126292509 126292810 -76035537 + AluSg SINE Alu 1 300 -10 2215 108 0 10 chr4 126293433 126293740 -76034607 - AluY SINE Alu -6 305 2 24 0 0 0 chr4 126293769 126293793 -76034554 + AT_rich Low_complexity Low_complexity 1 24 0 185 330 32 43 chr4 126294550 126294644 -76033703 + MIR SINE MIR 43 135 -73 22 56 0 0 chr4 126294747 126294783 -76033564 + AT_rich Low_complexity Low_complexity 1 36 0 1557 164 94 4 chr4 126294936 126295088 -76033259 - AluJb SINE Alu -12 300 163 195 42 0 0 chr4 126295088 126295112 -76033235 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1557 164 94 4 chr4 126295112 126295234 -76033113 - AluJb SINE Alu -149 163 1 1743 177 0 26 chr4 126296762 126297067 -76031280 + AluJo SINE Alu 1 297 -15 306 0 0 0 chr4 126298473 126298507 -76029840 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 36498 78 14 9 chr4 126298507 126304618 -76023729 - L1PA6 LINE L1 -11 6143 11 763 257 64 57 chr4 126304632 126304928 -76023419 + L2 LINE L2 3012 3309 -4 821 161 0 0 chr4 126305302 126305426 -76022921 + AluSq/x SINE Alu 1 124 -188 21 0 0 0 chr4 126305584 126305605 -76022742 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr4 126306651 126306702 -76021645 + AT_rich Low_complexity Low_complexity 1 51 0 315 356 74 35 chr4 126306709 126306911 -76021436 - L2 LINE L2 -37 3235 3026 201 351 109 6 chr4 126307382 126307547 -76020800 - MIR SINE MIR -69 193 12 1575 205 20 0 chr4 126308912 126309215 -76019132 + AluJb SINE Alu 1 309 -3 1373 193 33 33 chr4 126309225 126309500 -76018847 - AluJo SINE Alu -37 275 1 191 314 105 12 chr4 126309742 126309828 -76018519 - MIR3 SINE MIR -111 97 4 194 290 170 0 chr4 126310511 126310611 -76017736 + MIR SINE MIR 54 170 -92 1901 238 94 14 chr4 126310813 126311439 -76016908 - MER69 DNA AcHobo -550 676 1 371 326 163 33 chr4 126311455 126311817 -76016530 + L2 LINE L2 2865 3273 -40 1514 183 22 48 chr4 126311859 126312345 -76016002 - AluJo SINE Alu 0 312 1 5880 112 14 3 chr4 126312431 126313614 -76014733 + L1PA15 LINE L1 4960 6162 -3 6000 95 8 2 chr4 126313705 126314525 -76013822 + LTR12 LTR ERV1 2 826 0 1427 209 37 17 chr4 126314578 126314927 -76013420 + MLT1A1 LTR MaLR 10 365 0 391 138 15 0 chr4 126315540 126315605 -76012742 + MLT1B LTR MaLR 1 66 -324 2351 94 0 0 chr4 126315710 126316007 -76012340 + AluSg1 SINE Alu 1 297 -12 1700 144 28 25 chr4 126316149 126316263 -76012084 + MLT1B LTR MaLR 63 175 -215 2460 81 0 0 chr4 126316263 126316571 -76011776 + AluY SINE Alu 1 308 -3 1700 144 28 25 chr4 126316571 126316783 -76011564 + MLT1B LTR MaLR 175 390 0 2359 49 28 0 chr4 126318017 126318303 -76010044 - AluY SINE Alu -17 294 1 2263 201 11 25 chr4 126319073 126319545 -76008802 - LTR40c LTR ERVL 0 465 1 565 373 58 38 chr4 126319998 126320446 -76007901 - L2 LINE L2 0 3272 2816 398 288 113 36 chr4 126320484 126320706 -76007641 - L2 LINE L2 -559 2755 2517 2139 122 0 29 chr4 126320712 126321024 -76007323 - AluSx SINE Alu -9 303 1 195 313 12 0 chr4 126321293 126321373 -76006974 - L2 LINE L2 -1244 2070 1990 3518 50 9 15 chr4 126321483 126321944 -76006403 - L1PA8 LINE L1 -7 6165 5708 1505 213 50 15 chr4 126322192 126322410 -76005937 + MER6 DNA MER2_type 4 240 -625 306 0 0 0 chr4 126322410 126322444 -76005903 + (TG)n Simple_repeat Simple_repeat 1 34 0 1505 213 50 15 chr4 126322444 126322568 -76005779 + MER6 DNA MER2_type 240 358 -507 691 164 114 7 chr4 126322689 126322829 -76005518 + AluJb SINE Alu 158 312 0 200 200 0 0 chr4 126323039 126323084 -76005263 + (TG)n Simple_repeat Simple_repeat 1 45 0 219 325 56 44 chr4 126324055 126324215 -76004132 + MIR SINE MIR 41 202 -60 369 62 0 0 chr4 126324221 126324269 -76004078 + (TG)n Simple_repeat Simple_repeat 1 48 0 269 0 0 0 chr4 126324408 126324439 -76003908 + U2 snRNA snRNA 5 35 -153 247 148 62 86 chr4 126324530 126324611 -76003736 + MER116 DNA Mariner 2 80 0 34 24 0 0 chr4 126324631 126324672 -76003675 + AT_rich Low_complexity Low_complexity 1 41 0 211 397 0 0 chr4 126324833 126324911 -76003436 + L2 LINE L2 3233 3310 -3 282 269 21 21 chr4 126325137 126325230 -76003117 - L2 LINE L2 0 3313 3221 860 274 37 20 chr4 126325241 126325486 -76002861 - MIR SINE MIR -1 261 13 2942 151 3 37 chr4 126325859 126326447 -76001900 - L1MB4 LINE L1 -1 6179 5612 594 200 36 29 chr4 126326699 126326839 -76001508 - MIR3 SINE MIR -3 205 65 217 289 244 7 chr4 126327054 126327189 -76001158 + L2 LINE L2 3102 3268 -4 2510 60 0 3 chr4 126327875 126328173 -76000174 - AluY SINE Alu -14 297 1 692 240 40 6 chr4 126328307 126328482 -75999865 + MIR SINE MIR 51 231 -31 413 302 13 25 chr4 126328552 126328711 -75999636 + Charlie8 DNA MER1_type 17 173 -2244 3887 266 142 27 chr4 126328746 126330615 -75997732 + L2 LINE L2 1125 3266 -6 23 0 0 0 chr4 126332791 126332814 -75995533 + AT_rich Low_complexity Low_complexity 1 23 0 260 246 37 86 chr4 126332946 126333133 -75995214 - L1MC4 LINE L1 -1 8041 7864 1219 232 5 55 chr4 126333219 126333616 -75994731 - L1ME2 LINE L1 -10 6154 5778 1989 133 3 20 chr4 126333645 126333946 -75994401 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr4 126334879 126334901 -75993446 + AT_rich Low_complexity Low_complexity 1 22 0 2853 7 0 0 chr4 126335658 126335968 -75992379 - AluYa5 SINE Alu -1 310 1 308 302 158 15 chr4 126335971 126336173 -75992174 + L2 LINE L2 1991 2221 -1093 9789 73 14 34 chr4 126336243 126337644 -75990703 - SVA Other Other -1 1385 13 583 219 146 17 chr4 126337652 126337830 -75990517 - MIR SINE MIR -56 206 6 574 298 41 6 chr4 126337865 126338036 -75990311 + L2 LINE L2 2273 2449 -865 203 351 40 14 chr4 126339030 126339104 -75989243 - L2 LINE L2 -31 3241 3166 2267 105 0 7 chr4 126339276 126339582 -75988765 + AluSc SINE Alu 1 304 -5 26 0 0 0 chr4 126343940 126343966 -75984381 + AT_rich Low_complexity Low_complexity 1 26 0 613 326 63 13 chr4 126345650 126345889 -75982458 - MIR SINE MIR -6 256 6 194 333 81 36 chr4 126346091 126346202 -75982145 - L2 LINE L2 -1 3312 3197 247 83 0 0 chr4 126346304 126346340 -75982007 - L2 LINE L2 -222 3050 3015 278 253 69 23 chr4 126346509 126346596 -75981751 - Charlie8 DNA MER1_type -2326 91 1 198 118 0 0 chr4 126346864 126346898 -75981449 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 218 241 0 17 chr4 126346898 126346956 -75981391 - L2 LINE L2 -17 3255 3199 3251 134 37 22 chr4 126347107 126347146 -75981201 + L1MB3 LINE L1 5577 5614 -569 2049 111 7 36 chr4 126347146 126347453 -75980894 + AluSg SINE Alu 1 298 -12 3251 134 37 22 chr4 126347453 126348009 -75980338 + L1MB3 LINE L1 5614 6181 -2 208 378 145 20 chr4 126348706 126349002 -75979345 - L2 LINE L2 -644 2670 2338 26 50 0 0 chr4 126349438 126349478 -75978869 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 126350668 126350689 -75977658 + AT_rich Low_complexity Low_complexity 1 21 0 1867 158 3 7 chr4 126350740 126351044 -75977303 - AluJb SINE Alu -9 303 1 2019 177 17 17 chr4 126352044 126352405 -75975942 - MER47B DNA MER2_type 0 418 58 210 372 50 17 chr4 126352494 126352674 -75975673 - L2 LINE L2 -221 3051 2866 310 307 60 44 chr4 126353131 126353382 -75974965 - L2 LINE L2 -1037 2277 2023 2754 171 37 46 chr4 126353647 126353697 -75974650 - Charlie1 DNA MER1_type -12 2749 2700 1784 72 5 0 chr4 126353697 126353919 -75974428 + AluSp SINE Alu 83 305 -8 2754 171 37 46 chr4 126353919 126354521 -75973826 - Charlie1 DNA MER1_type -61 2700 2103 5594 75 16 3 chr4 126354524 126355284 -75973063 + L1PA13 LINE L1 5386 6155 -8 1268 181 65 8 chr4 126355288 126355548 -75972799 - Charlie1 DNA MER1_type -642 2119 1845 188 273 0 30 chr4 126355612 126355678 -75972669 + L2 LINE L2 3209 3272 0 1202 251 121 17 chr4 126357415 126357992 -75970355 - MER114 LTR ERV -11 637 1 180 234 0 0 chr4 126358295 126358342 -75970005 + CT-rich Low_complexity Low_complexity 2 48 0 331 328 23 23 chr4 126358516 126358647 -75969700 + L2 LINE L2 3138 3268 -4 290 25 0 25 chr4 126358915 126358955 -75969392 + (TTTTA)n Simple_repeat Simple_repeat 4 42 0 1481 150 115 0 chr4 126358958 126359218 -75969129 - AluJo SINE Alu -22 290 1 30 32 0 48 chr4 126359435 126359498 -75968849 + AT_rich Low_complexity Low_complexity 1 60 0 28 0 0 0 chr4 126361649 126361677 -75966670 + AT_rich Low_complexity Low_complexity 1 28 0 15363 153 19 26 chr4 126361684 126362663 -75965684 - L1MA2 LINE L1 0 6304 5320 1957 148 0 0 chr4 126362663 126362953 -75965394 - AluJb SINE Alu -22 290 1 2102 136 0 3 chr4 126362962 126363264 -75965083 - AluSc SINE Alu -8 301 1 15363 153 19 26 chr4 126363264 126363581 -75964766 - L1MA2 LINE L1 -992 5312 4994 1854 111 67 0 chr4 126363581 126363731 -75964616 - AluY SINE Alu -23 288 149 221 0 0 33 chr4 126363731 126363761 -75964586 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1854 111 67 0 chr4 126363761 126363880 -75964467 - AluY SINE Alu -162 149 1 15363 153 19 26 chr4 126363880 126365208 -75963139 - L1MA2 LINE L1 -1310 4994 3658 2232 114 0 0 chr4 126365208 126365516 -75962831 - AluSg SINE Alu 0 310 3 15363 153 19 26 chr4 126365516 126366012 -75962335 - L1MA2 LINE L1 -2646 3658 3160 1983 153 17 0 chr4 126366012 126366312 -75962035 - AluSx SINE Alu -3 309 5 15363 153 19 26 chr4 126366312 126367275 -75961072 - L1MA2 LINE L1 -3144 3160 2228 691 224 246 17 chr4 126367355 126367849 -75960498 - LTR50 LTR ERVL -111 684 1 922 188 4 86 chr4 126368561 126368795 -75959552 - MER20 DNA MER1_type -4 215 1 1512 135 274 15 chr4 126368996 126369336 -75959011 + MSTA LTR MaLR 1 428 0 618 269 44 6 chr4 126369419 126369579 -75958768 + MER58A DNA MER1_type 2 167 0 2300 115 78 5 chr4 126369788 126370172 -75958175 + MER6 DNA MER2_type 454 865 0 194 174 22 0 chr4 126370634 126370680 -75957667 + CT-rich Low_complexity Low_complexity 2 48 0 229 182 0 0 chr4 126371240 126371284 -75957063 + (CGG)n Simple_repeat Simple_repeat 2 45 0 346 258 81 8 chr4 126372715 126372839 -75955508 - MIR3 SINE MIR -27 181 49 263 296 25 57 chr4 126372938 126373068 -75955279 + MIR3 SINE MIR 3 125 -94 333 0 0 0 chr4 126373068 126373105 -75955242 + (TC)n Simple_repeat Simple_repeat 2 38 0 207 0 0 0 chr4 126373104 126373127 -75955220 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 533 251 51 23 chr4 126375719 126375894 -75952453 - MIR SINE MIR -5 257 78 442 266 55 16 chr4 126375993 126376121 -75952226 - MER5B DNA MER1_type -45 133 1 1502 113 8 8 chr4 126376142 126376381 -75951966 + L1MA6 LINE L1 6062 6300 0 203 61 30 0 chr4 126376399 126376432 -75951915 + (TA)n Simple_repeat Simple_repeat 2 35 0 203 200 0 0 chr4 126377210 126377245 -75951102 + A-rich Low_complexity Low_complexity 1 35 0 1855 147 55 33 chr4 126379385 126379752 -75948595 - THE1C LTR MaLR 0 375 1 455 228 183 30 chr4 126379977 126380174 -75948173 - MIR SINE MIR -24 238 12 457 361 60 0 chr4 126380670 126380853 -75947494 + L2 LINE L2 2566 2759 -555 451 263 41 80 chr4 126380890 126381089 -75947258 - MIR SINE MIR -18 190 2 186 328 33 16 chr4 126381478 126381539 -75946808 + L2 LINE L2 3125 3186 -86 3698 231 108 94 chr4 126381546 126382126 -75946221 - Charlie7 DNA MER1_type -40 2572 2002 2073 116 0 0 chr4 126382126 126382434 -75945913 - AluSq SINE Alu 0 308 1 3698 231 108 94 chr4 126382434 126384310 -75944037 - Charlie7 DNA MER1_type -610 2002 79 438 288 9 0 chr4 126384321 126384432 -75943915 - L2 LINE L2 -328 2985 2874 1963 133 71 37 chr4 126384658 126385010 -75943337 - THE1B LTR MaLR 0 364 1 267 226 129 0 chr4 126385388 126385450 -75942897 + MIR SINE MIR 77 146 -62 345 243 39 10 chr4 126385597 126385700 -75942647 - Charlie7 DNA MER1_type -2248 364 259 2165 95 0 20 chr4 126386092 126386388 -75941959 - AluSc SINE Alu -19 290 1 410 240 39 0 chr4 126386487 126386591 -75941756 + MIR SINE MIR 110 217 -45 270 56 0 0 chr4 126387803 126387839 -75940508 + (TG)n Simple_repeat Simple_repeat 1 36 0 344 347 34 27 chr4 126388733 126388880 -75939467 + MIR3 SINE MIR 30 177 -31 29 0 0 0 chr4 126389182 126389211 -75939136 + AT_rich Low_complexity Low_complexity 1 29 0 1517 153 30 27 chr4 126389224 126389486 -75938861 - AluJo SINE Alu -49 263 1 291 244 22 67 chr4 126389493 126389628 -75938719 - L1MC5 LINE L1 -905 7056 6928 235 261 87 29 chr4 126390082 126390220 -75938127 - HAL1b LINE L1 -7 1341 1196 827 280 14 25 chr4 126390273 126390555 -75937792 - L1ME4a LINE L1 -234 5887 5609 21 36 0 0 chr4 126390588 126390616 -75937731 + AT_rich Low_complexity Low_complexity 1 28 0 195 69 0 0 chr4 126393077 126393106 -75935241 + (TG)n Simple_repeat Simple_repeat 1 29 0 270 341 67 72 chr4 126394372 126394571 -75933776 - L3 LINE CR1 -1 1576 1378 1711 181 3 3 chr4 126394571 126394853 -75933494 - AluJb SINE Alu -30 282 1 270 341 67 72 chr4 126394853 126394984 -75933363 - L3 LINE CR1 -199 1378 1248 244 281 170 23 chr4 126395061 126395232 -75933115 + L3 LINE CR1 807 1002 -575 309 318 182 20 chr4 126395415 126395563 -75932784 - L2 LINE L2 0 3272 3101 309 26 0 0 chr4 126395933 126395971 -75932376 + (TG)n Simple_repeat Simple_repeat 1 38 0 382 368 171 20 chr4 126396246 126397134 -75931213 - L2 LINE L2 -566 2748 1727 28 29 0 0 chr4 126397461 126397496 -75930851 + AT_rich Low_complexity Low_complexity 1 35 0 1326 253 114 42 chr4 126397804 126398416 -75929931 - L1ME3 LINE L1 -240 5922 5267 2074 137 0 10 chr4 126398540 126398846 -75929501 - AluJb SINE Alu -9 303 1 29 84 0 0 chr4 126398950 126399021 -75929326 + AT_rich Low_complexity Low_complexity 1 71 0 1792 188 0 6 chr4 126399094 126399408 -75928939 - AluJo SINE Alu 0 312 1 2130 114 6 22 chr4 126399483 126399800 -75928547 + AluSq SINE Alu 1 312 -1 26 50 0 0 chr4 126401283 126401323 -75927024 + AT_rich Low_complexity Low_complexity 1 40 0 267 317 42 21 chr4 126401579 126401721 -75926626 - MER117 DNA MER1_type -52 145 1 213 342 105 9 chr4 126401834 126401948 -75926399 - L2 LINE L2 -10 3303 3179 280 356 162 32 chr4 126402104 126402794 -75925553 - L2 LINE L2 -354 2960 2181 1720 174 0 28 chr4 126403259 126403580 -75924767 - AluJo SINE Alu 0 312 1 254 400 62 0 chr4 126403592 126403802 -75924545 + L2 LINE L2 2100 2322 -992 637 204 0 0 chr4 126403858 126403966 -75924381 + FLAM_A SINE Alu 18 125 -17 222 37 0 0 chr4 126404154 126404181 -75924166 + (CA)n Simple_repeat Simple_repeat 1 27 0 340 353 52 0 chr4 126404344 126404460 -75923887 + L2 LINE L2 3102 3223 -49 24 32 0 0 chr4 126404735 126404766 -75923581 + AT_rich Low_complexity Low_complexity 1 31 0 3044 101 7 0 chr4 126405497 126405931 -75922416 + L1PA15 LINE L1 5722 6158 -7 238 358 42 33 chr4 126408282 126408402 -75919945 - L2 LINE L2 -14 3258 3138 202 378 81 14 chr4 126408428 126408650 -75919697 - L2 LINE L2 -337 2977 2741 232 316 18 0 chr4 126408944 126409001 -75919346 + MER91 DNA MER1_type 83 140 0 327 261 38 71 chr4 126410417 126410601 -75917746 + MIR SINE MIR 35 212 -50 346 320 33 27 chr4 126410800 126410950 -75917397 - MIR SINE MIR -110 152 2 2313 115 0 0 chr4 126411255 126411567 -75916780 - AluSx SINE Alu 0 312 1 2010 142 0 0 chr4 126412997 126413286 -75915061 + AluSx SINE Alu 16 304 -8 909 221 81 5 chr4 126413288 126413510 -75914837 + MIR SINE MIR 24 262 0 206 259 140 77 chr4 126414785 126414928 -75913419 - L2 LINE L2 0 3272 3121 452 294 92 11 chr4 126415301 126415485 -75912862 + MIR SINE MIR 50 248 -14 637 25 0 0 chr4 126415818 126415898 -75912449 + L1PA3 LINE L1 6073 6152 -3 1247 162 39 97 chr4 126416780 126417088 -75911259 + MLT1A1 LTR MaLR 1 290 -75 2471 202 41 31 chr4 126417472 126418027 -75910320 + MER74B LTR ERVL 62 622 0 1133 145 82 14 chr4 126418247 126418454 -75909893 - MER7A DNA MER2_type 0 346 126 369 143 32 16 chr4 126418454 126418517 -75909830 - MER8 DNA MER2_type 0 239 176 * 2427 149 48 29 chr4 126418506 126418948 -75909399 + Tigger2 DNA MER2_type 2268 2717 -1 584 169 93 0 chr4 126418948 126419066 -75909281 - MER7A DNA MER2_type -219 127 1 23 0 0 0 chr4 126419097 126419120 -75909227 + AT_rich Low_complexity Low_complexity 1 23 0 1000 316 49 31 chr4 126419413 126419865 -75908482 + L3 LINE CR1 1106 1565 -12 830 290 78 38 chr4 126419966 126420390 -75907957 + MLT1K LTR MaLR 142 582 -6 208 139 0 0 chr4 126420700 126420736 -75907611 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 187 236 0 91 chr4 126422677 126422732 -75905615 - L2 LINE L2 -13 3259 3210 346 270 36 18 chr4 126423208 126423319 -75905028 + MIR SINE MIR 18 130 -78 1772 161 7 16 chr4 126423610 126423914 -75904433 - AluJo SINE Alu -10 302 2 281 370 63 8 chr4 126423962 126424089 -75904258 - L2 LINE L2 -2 3270 3137 618 234 91 7 chr4 126424262 126424416 -75903931 + MIR SINE MIR 77 243 -19 24 32 0 0 chr4 126425050 126425081 -75903266 + AT_rich Low_complexity Low_complexity 1 31 0 212 254 0 30 chr4 126425339 126425473 -75902874 + CT-rich Low_complexity Low_complexity 2 131 0 325 240 19 58 chr4 126425486 126425590 -75902757 - L2 LINE L2 -42 3271 3172 886 9 18 0 chr4 126426739 126426850 -75901497 + (TCTA)n Simple_repeat Simple_repeat 2 114 0 596 310 27 37 chr4 126427003 126427190 -75901157 + MIR3 SINE MIR 6 191 -17 263 361 33 16 chr4 126427520 126427642 -75900705 - L2 LINE L2 0 3272 3149 360 0 0 0 chr4 126428334 126428374 -75899973 + (TG)n Simple_repeat Simple_repeat 2 41 0 6109 125 193 87 chr4 126429555 126431090 -75897257 + pTR5 LTR ERV1 742 2438 0 283 331 81 22 chr4 126431195 126431331 -75897016 - MIR SINE MIR -74 188 45 220 207 103 0 chr4 126433154 126433212 -75895135 + MIR SINE MIR 120 183 -79 478 180 0 11 chr4 126434049 126434138 -75894209 - Tigger5 DNA MER2_type 0 2323 2236 258 216 20 0 chr4 126434147 126434198 -75894149 - Tigger5 DNA MER2_type -2268 55 4 191 293 0 17 chr4 126434352 126434410 -75893937 - MIR SINE MIR -129 133 77 1754 149 24 24 chr4 126434709 126435005 -75893342 - AluJb SINE Alu -16 296 1 184 220 20 20 chr4 126435094 126435144 -75893203 + MIR SINE MIR 156 205 -57 1056 238 155 24 chr4 126437109 126437534 -75890813 + MLT1D LTR MaLR 1 481 -24 998 108 48 11 chr4 126437545 126437731 -75890616 + L1MC/D LINE L1 5367 5559 -800 870 311 144 50 chr4 126437793 126438348 -75889999 + L2 LINE L2 2181 2683 -630 997 142 68 78 chr4 126438348 126438567 -75889780 + MER20 DNA MER1_type 1 217 -2 870 311 144 50 chr4 126438567 126439039 -75889308 + L2 LINE L2 2683 3305 -8 21 0 0 0 chr4 126439738 126439759 -75888588 + AT_rich Low_complexity Low_complexity 1 21 0 415 188 228 10 chr4 126440791 126440892 -75887455 - FLAM_A SINE Alu -19 123 1 1867 142 40 13 chr4 126441447 126441568 -75886779 + AluJb SINE Alu 1 117 -195 437 0 19 0 chr4 126441568 126441621 -75886726 + (CA)n Simple_repeat Simple_repeat 2 55 0 1867 142 40 13 chr4 126441621 126441801 -75886546 + AluJb SINE Alu 117 310 -2 285 293 0 0 chr4 126441865 126441947 -75886400 + CT-rich Low_complexity Low_complexity 2 83 0 252 317 138 24 chr4 126442014 126442137 -75886210 - L2 LINE L2 0 3272 3136 524 258 25 0 chr4 126442925 126443045 -75885302 - L2 LINE L2 0 3313 3191 1341 171 129 23 chr4 126443080 126443344 -75885003 + AluJb SINE Alu 1 292 -20 24 0 0 0 chr4 126443886 126443910 -75884437 + AT_rich Low_complexity Low_complexity 1 24 0 321 333 7 20 chr4 126444278 126444425 -75883922 - MIR SINE MIR 0 262 118 249 302 167 8 chr4 126447469 126447595 -75880752 - L2 LINE L2 -1 3312 3167 186 277 15 46 chr4 126448086 126448151 -75880196 + L2 LINE L2 3251 3313 0 2033 117 3 28 chr4 126448797 126449119 -75879228 - AluSx SINE Alu 0 315 1 827 210 12 49 chr4 126449242 126449485 -75878862 - MER106A DNA MER1_type -1 235 2 319 297 153 0 chr4 126449505 126449616 -75878731 - MER5B DNA MER1_type -14 164 37 2259 141 43 5 chr4 126449707 126450103 -75878244 + MSTB LTR MaLR 3 413 -13 2368 89 0 0 chr4 126452535 126452838 -75875509 + AluSc SINE Alu 1 303 -6 315 287 118 21 chr4 126453444 126453681 -75874666 - MIR SINE MIR 0 262 3 375 297 0 0 chr4 126454217 126454308 -75874039 + MER81 DNA DNA 17 107 -7 511 298 142 15 chr4 126454691 126455100 -75873247 + MARNA DNA Mariner 78 538 -48 995 129 109 50 chr4 126455434 126455458 -75872889 - MER20 DNA MER1_type -5 214 193 2346 108 0 0 chr4 126455458 126455754 -75872593 - AluSx SINE Alu -16 296 1 995 129 109 50 chr4 126455754 126455931 -75872416 - MER20 DNA MER1_type -26 193 1 478 259 15 23 chr4 126456160 126456291 -75872056 - L2 LINE L2 0 3272 3143 1703 242 21 27 chr4 126456351 126456826 -75871521 + MER74B LTR ERVL 58 529 -93 546 320 143 51 chr4 126457087 126457756 -75870591 - L2 LINE L2 -537 2777 2047 321 243 155 10 chr4 126457973 126458076 -75870271 + L2 LINE L2 3195 3312 -1 2309 103 0 10 chr4 126458292 126458604 -75869743 + AluSc SINE Alu 1 309 0 1293 195 13 94 chr4 126460099 126460246 -75868101 - MER2 DNA MER2_type 0 344 187 1719 135 3 67 chr4 126460246 126460558 -75867789 - AluSx SINE Alu -20 292 1 1293 195 13 94 chr4 126460558 126460784 -75867563 - MER2 DNA MER2_type -157 187 1 554 244 142 34 chr4 126460787 126460992 -75867355 - MIR SINE MIR -2 260 34 * 753 349 76 35 chr4 126460974 126461678 -75866669 - L2 LINE L2 -42 3230 2487 203 0 0 36 chr4 126462841 126462869 -75865478 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr4 126463569 126463593 -75864754 + AT_rich Low_complexity Low_complexity 1 24 0 1605 154 11 21 chr4 126463599 126463878 -75864469 - AluJo SINE Alu -36 276 1 256 292 97 35 chr4 126464528 126464641 -75863706 - L2 LINE L2 -4 3268 3149 2089 133 3 10 chr4 126464695 126465003 -75863344 + AluSx SINE Alu 1 306 -6 2903 173 238 58 chr4 126465261 126466125 -75862222 + LTR28 LTR ERV1 1 1020 0 246 333 49 10 chr4 126468556 126468658 -75859689 - L3 LINE CR1 -126 1451 1346 2744 7 0 7 chr4 126468658 126468962 -75859385 + AluYa5 SINE Alu 1 302 -9 759 285 19 39 chr4 126469515 126469775 -75858572 - MIR SINE MIR 0 262 8 2152 135 0 0 chr4 126469803 126470099 -75858248 - AluSq SINE Alu -17 296 1 1816 249 88 34 chr4 126470941 126471792 -75856555 + L2 LINE L2 2420 3311 -2 345 333 145 37 chr4 126472144 126472495 -75855852 + L3b LINE CR1 1134 1522 -61 2126 140 7 0 chr4 126472790 126473097 -75855250 + AluSq SINE Alu 1 309 -4 521 257 123 18 chr4 126473945 126474116 -75854231 - MIR SINE MIR 0 262 74 23 0 0 0 chr4 126474176 126474199 -75854148 + AT_rich Low_complexity Low_complexity 1 23 0 787 203 55 16 chr4 126474676 126474858 -75853489 - AluJb SINE Alu -11 301 113 193 148 0 0 chr4 126474867 126474894 -75853453 + MIR SINE MIR 219 245 -17 855 105 0 0 chr4 126475511 126475625 -75852722 + AluSg/x SINE Alu 191 304 -5 2252 126 0 0 chr4 126476184 126476493 -75851854 - AluSx SINE Alu -3 309 1 189 94 0 0 chr4 126476951 126476983 -75851364 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 469 83 0 0 chr4 126476987 126477108 -75851239 + Alu SINE Alu 220 340 0 195 382 53 8 chr4 126477623 126477754 -75850593 + L3b LINE CR1 1316 1452 -131 525 233 17 8 chr4 126478192 126478312 -75850035 + MER5A DNA MER1_type 2 122 -67 896 319 12 0 chr4 126479981 126480229 -75848118 - MIR SINE MIR 0 262 12 564 241 162 31 chr4 126480826 126481054 -75847293 + MIR SINE MIR 3 260 -2 585 273 53 44 chr4 126482028 126482197 -75846150 + MIR SINE MIR 21 194 -68 522 256 107 29 chr4 126482197 126482439 -75845908 + MIR SINE MIR 1 261 -1 585 273 53 44 chr4 126482439 126482496 -75845851 + MIR SINE MIR 194 249 -13 23 78 0 0 chr4 126483122 126483173 -75845174 + AT_rich Low_complexity Low_complexity 1 51 0 222 37 0 0 chr4 126487268 126487295 -75841052 + (TTA)n Simple_repeat Simple_repeat 2 28 0 745 155 0 0 chr4 126487295 126487411 -75840936 - FLAM_C SINE Alu -27 116 1 240 270 0 16 chr4 126487436 126487499 -75840848 + MIR SINE MIR 186 247 -15 41 48 0 0 chr4 126491168 126491230 -75837117 + AT_rich Low_complexity Low_complexity 1 62 0 26 0 0 0 chr4 126491428 126491454 -75836893 + AT_rich Low_complexity Low_complexity 1 26 0 180 97 0 0 chr4 126491909 126491940 -75836407 + (A)n Simple_repeat Simple_repeat 1 31 0 23 33 0 0 chr4 126494420 126494450 -75833897 + AT_rich Low_complexity Low_complexity 1 30 0 202 149 0 43 chr4 126494648 126494695 -75833652 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 37 62 0 0 chr4 126495451 126495516 -75832831 + AT_rich Low_complexity Low_complexity 1 65 0 2210 92 0 3 chr4 126497073 126497486 -75830861 + AluSg SINE Alu 1 412 0 1453 159 19 94 chr4 126497493 126497802 -75830545 + AluSx SINE Alu 1 286 -26 639 282 78 27 chr4 126498259 126498553 -75829794 + LTR33 LTR ERVL 212 520 -1 23 0 0 0 chr4 126499392 126499415 -75828932 + AT_rich Low_complexity Low_complexity 1 23 0 392 309 68 38 chr4 126500313 126500549 -75827798 + MIR SINE MIR 5 247 -15 26 0 0 0 chr4 126500597 126500623 -75827724 + AT_rich Low_complexity Low_complexity 1 26 0 1828 81 4 0 chr4 126500927 126501173 -75827174 - L1PA14 LINE L1 -8 6153 5907 1633 145 72 13 chr4 126501207 126501525 -75826822 - L1MA4 LINE L1 -9 6291 5955 2750 127 24 0 chr4 126501526 126501976 -75826371 + L1MA4 LINE L1 5471 5931 -369 1756 92 22 0 chr4 126503717 126503944 -75824403 - AluSq SINE Alu -15 298 67 22 35 0 0 chr4 126504842 126504871 -75823476 + AT_rich Low_complexity Low_complexity 1 29 0 349 309 24 24 chr4 126504875 126504998 -75823349 + MIR SINE MIR 29 151 -57 6013 184 62 19 chr4 126505453 126505710 -75822637 - Charlie1a DNA MER1_type -1307 1454 1210 2010 124 33 0 chr4 126505710 126506009 -75822338 - AluSx SINE Alu 0 308 1 6013 184 62 19 chr4 126506009 126507143 -75821204 - Charlie1a DNA MER1_type -1551 1210 1 3410 78 4 0 chr4 126507308 126507769 -75820578 + L1PA8 LINE L1 5710 6172 0 2288 123 0 0 chr4 126507927 126508229 -75820118 + AluSx SINE Alu 1 302 -10 290 243 14 14 chr4 126508373 126508443 -75819904 + L2 LINE L2 3242 3311 -2 2329 119 11 8 chr4 126509566 126509920 -75818427 + THE1A LTR MaLR 1 355 0 240 271 0 0 chr4 126509984 126510032 -75818315 + L2 LINE L2 3219 3266 -6 554 258 152 0 chr4 126510168 126510319 -75818028 + MER5A DNA MER1_type 9 182 -7 213 327 26 64 chr4 126510371 126510527 -75817820 - MER5A DNA MER1_type -2 187 38 203 133 0 0 chr4 126510601 126510631 -75817716 + (TG)n Simple_repeat Simple_repeat 1 30 0 181 222 111 0 chr4 126511780 126511834 -75816513 - L2 LINE L2 0 3272 3213 234 231 0 0 chr4 126511974 126512026 -75816321 - L2 LINE L2 -5 3308 3257 243 22 44 22 chr4 126512715 126512760 -75815587 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 690 100 0 0 chr4 126512833 126512933 -75815414 + (TA)n Simple_repeat Simple_repeat 1 100 0 231 36 0 0 chr4 126512977 126513005 -75815342 + (TG)n Simple_repeat Simple_repeat 1 28 0 200 163 47 0 chr4 126513005 126513048 -75815299 + GA-rich Low_complexity Low_complexity 2 46 0 7680 20 0 0 chr4 126514403 126515909 -75812438 + L1PA4 LINE L1 4635 6140 -15 390 272 161 6 chr4 126515954 126516116 -75812231 + HAL1 LINE L1 194 380 -2127 714 239 236 76 chr4 126516171 126516704 -75811643 + HAL1 LINE L1 492 1177 -1330 1877 109 103 29 chr4 126516704 126517053 -75811294 + THE1C LTR MaLR 1 375 0 714 239 236 76 chr4 126517053 126517257 -75811090 + HAL1 LINE L1 1177 1347 -1160 1634 234 108 42 chr4 126517289 126517603 -75810744 + HAL1 LINE L1 1580 1872 -635 2023 110 43 0 chr4 126517603 126517884 -75810463 + AluSg SINE Alu 1 293 -17 1634 234 108 42 chr4 126517884 126518283 -75810064 + HAL1 LINE L1 1872 2340 -167 285 181 28 14 chr4 126518436 126518508 -75809839 + HAL1 LINE L1 2433 2505 -2 21 0 0 0 chr4 126518809 126518830 -75809517 + AT_rich Low_complexity Low_complexity 1 21 0 206 61 0 30 chr4 126519276 126519309 -75809038 + (GAAA)n Simple_repeat Simple_repeat 4 35 0 335 210 0 16 chr4 126520034 126520096 -75808251 + AluJ/FRAM SINE Alu 218 278 -24 240 206 222 0 chr4 126520501 126520532 -75807815 + AluJo SINE Alu 86 109 -193 273 75 0 0 chr4 126520532 126520572 -75807775 + (CATA)n Simple_repeat Simple_repeat 3 42 0 240 206 222 0 chr4 126520572 126520603 -75807744 + AluJo SINE Alu 109 162 -140 1923 157 0 13 chr4 126520698 126520998 -75807349 + AluJb SINE Alu 1 296 -16 513 256 45 0 chr4 126521042 126521175 -75807172 - MIR SINE MIR -53 209 71 230 0 33 0 chr4 126521239 126521269 -75807078 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 227 193 35 35 chr4 126521269 126521326 -75807021 + GA-rich Low_complexity Low_complexity 3 59 0 379 301 42 67 chr4 126521364 126521557 -75806790 - MIR3 SINE MIR -3 205 18 2759 10 0 7 chr4 126522882 126523192 -75805155 - AluYa5 SINE Alu -3 308 1 2124 102 0 7 chr4 126523278 126523561 -75804786 - AluSc SINE Alu -14 295 15 365 302 87 47 chr4 126523833 126524218 -75804129 - L2 LINE L2 -222 3050 2652 517 51 13 13 chr4 126524235 126524313 -75804034 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 225 160 0 173 chr4 126524349 126524424 -75803923 - Charlie5 DNA MER1_type -28 2584 2523 320 258 0 90 chr4 126524425 126524514 -75803833 - MIR SINE MIR -164 98 18 675 322 26 4 chr4 126524559 126524792 -75803555 + MIR SINE MIR 24 261 -1 186 171 0 0 chr4 126526899 126526940 -75801407 + (CA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr4 126526989 126527011 -75801336 + AT_rich Low_complexity Low_complexity 1 22 0 841 207 71 10 chr4 126527511 126527709 -75800638 + Charlie1 DNA MER1_type 1 210 -2551 314 339 96 42 chr4 126527719 126528283 -75800064 + L2 LINE L2 2447 3057 -215 211 286 114 0 chr4 126528256 126528326 -75800021 + L2 LINE L2 2899 2976 -338 * 2389 101 0 0 chr4 126528703 126529011 -75799336 + AluSx SINE Alu 1 308 -4 2145 118 0 3 chr4 126529241 126529547 -75798800 + AluSx SINE Alu 1 305 -7 606 295 32 6 chr4 126529582 126529738 -75798609 + L2 LINE L2 3111 3270 -2 184 343 38 29 chr4 126529750 126529855 -75798492 + L2 LINE L2 2996 3101 -171 291 274 157 45 chr4 126529882 126530105 -75798242 - MIR SINE MIR -10 252 5 201 242 15 45 chr4 126532154 126532220 -75796127 - MIR SINE MIR 0 262 199 186 306 122 0 chr4 126532226 126532324 -75796023 + MIR SINE MIR 106 215 -47 1239 179 40 20 chr4 126532513 126532764 -75795583 - AluJb SINE Alu -56 256 1 345 268 143 18 chr4 126534979 126535147 -75793200 - MER5A DNA MER1_type 0 189 1 226 287 79 69 chr4 126535460 126535676 -75792671 - L2 LINE L2 -211 3061 2844 403 280 180 71 chr4 126536002 126536863 -75791484 - L2 LINE L2 -644 2670 1716 377 289 41 0 chr4 126539144 126539265 -75789082 + MIR SINE MIR 18 143 -65 212 314 107 0 chr4 126540396 126540517 -75787830 + MIR SINE MIR 118 251 -11 347 160 13 0 chr4 126540521 126540596 -75787751 + (CAT)n Simple_repeat Simple_repeat 2 77 0 22 0 0 0 chr4 126541679 126541701 -75786646 + AT_rich Low_complexity Low_complexity 1 22 0 273 286 34 42 chr4 126542216 126542335 -75786012 + L2 LINE L2 2641 2758 -556 995 244 73 3 chr4 126542356 126542659 -75785688 + MER58B DNA MER1_type 9 332 -9 215 239 46 83 chr4 126542744 126542853 -75785494 + L2 LINE L2 2938 3042 -230 37 39 0 0 chr4 126542974 126543025 -75785322 + AT_rich Low_complexity Low_complexity 1 51 0 197 373 15 0 chr4 126543201 126543268 -75785079 + L2 LINE L2 3205 3272 0 2344 60 0 0 chr4 126543414 126543727 -75784620 - AluY SINE Alu 0 313 1 180 333 43 93 chr4 126543863 126544142 -75784205 + L2 LINE L2 2820 3084 -188 259 278 28 83 chr4 126544182 126544326 -75784021 - MER5A DNA MER1_type -45 144 9 413 298 59 87 chr4 126545794 126546562 -75781785 + L1ME3A LINE L1 400 1145 -4974 497 303 69 15 chr4 126546562 126546823 -75781524 + L1ME3A LINE L1 2280 2554 -3575 472 308 70 0 chr4 126546936 126547092 -75781255 - MIR SINE MIR -70 192 26 278 269 86 0 chr4 126547213 126547306 -75781041 - MIR3 SINE MIR -26 182 82 218 368 0 0 chr4 126547320 126547396 -75780951 + L2 LINE L2 2552 2627 -687 5133 143 22 12 chr4 126547396 126548240 -75780107 + L1PB4 LINE L1 4955 5811 -345 198 71 0 0 chr4 126548240 126548268 -75780079 + (TG)n Simple_repeat Simple_repeat 1 28 0 5133 143 22 12 chr4 126548268 126548605 -75779742 + L1PB4 LINE L1 5811 6143 -13 24 0 0 0 chr4 126548605 126548629 -75779718 + AT_rich Low_complexity Low_complexity 1 24 0 1873 166 0 0 chr4 126548959 126549266 -75779081 + AluSx SINE Alu 1 307 0 205 310 11 46 chr4 126549382 126549469 -75778878 + L2 LINE L2 3189 3272 0 688 331 124 34 chr4 126549540 126550435 -75777912 - L2 LINE L2 -5 3308 2334 854 247 63 29 chr4 126550483 126550722 -75777625 - MIR SINE MIR 0 262 16 242 216 189 18 chr4 126551117 126551228 -75777119 - L2 LINE L2 -56 3257 3128 364 325 102 35 chr4 126551358 126551555 -75776792 + L1ME3A LINE L1 2592 2801 -3328 414 264 104 12 chr4 126551576 126551739 -75776608 + MLT1J2 LTR MaLR 39 216 -234 273 139 4 4 chr4 126551826 126551883 -75776464 + MLT1J1 LTR MaLR 346 407 -43 554 295 103 14 chr4 126552001 126552305 -75776042 + L1ME3A LINE L1 3013 3342 -2787 1711 211 48 37 chr4 126552317 126552777 -75775570 + LTR40a LTR ERVL 54 518 -1 2233 101 3 0 chr4 126552931 126553219 -75775128 + AluSc SINE Alu 6 294 -15 522 275 157 34 chr4 126553221 126554079 -75774268 + L1ME3A LINE L1 4929 5894 -310 2506 62 0 0 chr4 126554451 126554760 -75773587 - AluY SINE Alu -2 309 1 226 250 103 0 chr4 126555195 126555263 -75773084 + L2 LINE L2 3206 3280 -33 652 318 27 27 chr4 126555642 126555865 -75772482 + MIR SINE MIR 17 239 -23 264 149 0 0 chr4 126555903 126555950 -75772397 + (ATGGTG)n Simple_repeat Simple_repeat 4 50 0 843 174 53 32 chr4 126555965 126556155 -75772192 + MER2 DNA MER2_type 2 195 -150 910 255 96 26 chr4 126556829 126557174 -75771173 + MER57B LTR ERV1 66 434 0 193 404 0 0 chr4 126557789 126557846 -75770501 + L2 LINE L2 3138 3194 -78 2323 79 0 0 chr4 126558097 126558399 -75769948 + AluSc SINE Alu 3 304 0 1050 281 136 47 chr4 126558404 126559151 -75769196 - L2 LINE L2 -23 3290 2457 401 267 0 0 chr4 126559152 126559238 -75769109 - L2 LINE L2 -1142 2172 2087 * 434 241 78 0 chr4 126559235 126559351 -75768996 + L2 LINE L2 2192 2316 -998 1844 272 88 32 chr4 126559430 126560297 -75768050 + L2 LINE L2 2315 3231 -82 2051 80 63 25 chr4 126560297 126560583 -75767764 - AluSp SINE Alu -16 297 1 1844 272 88 32 chr4 126560583 126560667 -75767680 + L2 LINE L2 3231 3309 -4 212 281 146 0 chr4 126560669 126560751 -75767596 - L2 LINE L2 -1237 2077 1984 265 264 56 0 chr4 126561017 126561089 -75767258 - L2 LINE L2 -3 3310 3235 246 81 0 0 chr4 126561261 126561298 -75767049 + (CA)n Simple_repeat Simple_repeat 2 38 0 364 330 43 43 chr4 126561308 126561590 -75766757 + L2 LINE L2 1719 2000 -1314 184 100 67 0 chr4 126561639 126561669 -75766678 - L2 LINE L2 0 3272 3241 221 167 185 0 chr4 126562035 126562089 -75766258 + MIR SINE MIR 82 145 -117 2222 106 44 33 chr4 126562115 126562475 -75765872 + THE1B LTR MaLR 1 364 0 194 283 75 0 chr4 126562546 126562599 -75765748 - MIR SINE MIR 0 262 206 2069 137 7 0 chr4 126562731 126563031 -75765316 - AluSx SINE Alu -10 302 1 2444 67 0 13 chr4 126563046 126563361 -75764986 - AluY SINE Alu 0 311 1 344 321 15 29 chr4 126564285 126564422 -75763925 + MIR SINE MIR 15 149 -113 311 303 185 0 chr4 126566284 126566446 -75761901 - MIR SINE MIR -12 250 59 1351 181 14 72 chr4 126566613 126566906 -75761441 - AluJo SINE Alu -10 302 27 324 312 211 0 chr4 126567091 126567200 -75761147 - L2 LINE L2 0 3313 3182 448 169 0 0 chr4 126567219 126567290 -75761057 - FRAM/FAM SINE Alu -88 88 18 504 0 0 0 chr4 126567351 126567407 -75760940 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 1228 292 42 16 chr4 126567485 126567916 -75760431 + MLT1J LTR MaLR 68 509 -2 324 283 127 6 chr4 126567922 126568088 -75760259 - L2 LINE L2 -185 3128 2943 227 324 14 0 chr4 126568194 126568265 -75760082 - L2 LINE L2 -358 2956 2885 2404 97 0 7 chr4 126569641 126569949 -75758398 - AluSg SINE Alu -4 306 1 24 77 0 0 chr4 126569959 126570011 -75758336 + AT_rich Low_complexity Low_complexity 1 52 0 373 295 0 0 chr4 126570140 126570235 -75758112 + MIR3 SINE MIR 113 207 -1 42010 40 1 2 chr4 126573078 126579239 -75749108 - L1PA3 LINE L1 0 6155 4 2015 148 13 0 chr4 126579305 126579603 -75748744 + AluSx SINE Alu 1 302 -10 1080 217 55 52 chr4 126582516 126582880 -75745467 - MLT1A1 LTR MaLR 0 365 1 1037 179 44 0 chr4 126582933 126583184 -75745163 + L1MA4 LINE L1 6035 6296 -4 438 221 50 21 chr4 126583614 126583754 -75744593 - MER31A-int LTR ERV1 -3100 4437 4294 609 153 98 110 chr4 126583784 126584038 -75744309 - MER31A-int LTR ERV1 -3608 1328 1078 4040 160 16 9 chr4 126584042 126584810 -75743537 + L1MA4 LINE L1 5487 6259 -41 38946 39 1 1 chr4 126584815 126590963 -75737384 + L1PA4 LINE L1 7 6152 -3 260 132 19 0 chr4 126590985 126591039 -75737308 + L1MA5A LINE L1 6242 6293 -4 511 186 36 15 chr4 126591043 126591212 -75737135 - MER31A-int LTR ERV1 -3133 1738 887 419 250 76 23 chr4 126591249 126591381 -75736966 - MER31A-int LTR ERV1 -4182 754 616 * 627 220 23 42 chr4 126591372 126591586 -75736761 - MER31A-int LTR ERV1 -4526 410 201 458 188 51 34 chr4 126591553 126591670 -75736677 - MER31A-int LTR ERV1 -4646 290 172 * 1283 177 262 6 chr4 126591900 126592244 -75736103 - MER31A LTR ERV1 0 485 54 12358 142 10 3 chr4 126592421 126595041 -75733306 - L1P4 LINE L1 -430 5738 3106 508 351 93 46 chr4 126595063 126595827 -75732520 + L2 LINE L2 2174 2973 -341 2835 13 0 0 chr4 126596277 126596589 -75731758 - AluYb8 SINE Alu -6 312 1 245 197 92 13 chr4 126596666 126596742 -75731605 + MER69 DNA AcHobo 2438 2519 -7 238 268 42 0 chr4 126597622 126597693 -75730654 + MIR SINE MIR 66 139 -123 259 330 122 17 chr4 126597875 126597990 -75730357 - L2 LINE L2 -1 3271 3145 194 281 62 16 chr4 126598007 126598066 -75730281 - MIR SINE MIR -185 77 16 560 287 6 6 chr4 126598066 126598223 -75730124 + MIR SINE MIR 1 157 -105 2743 10 0 3 chr4 126599716 126600023 -75728324 + AluYa5 SINE Alu 1 306 -5 365 325 183 5 chr4 126600110 126600307 -75728040 + MIR SINE MIR 20 251 -11 397 268 104 44 chr4 126600403 126600777 -75727570 - L1MEd LINE L1 -4863 1256 957 390 91 0 0 chr4 126600777 126600832 -75727515 + (TG)n Simple_repeat Simple_repeat 2 56 0 333 102 0 0 chr4 126600831 126600890 -75727457 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 * 560 358 33 4 chr4 126600902 126601145 -75727202 - L1MEd LINE L1 -5429 690 441 400 316 89 6 chr4 126602101 126602259 -75726088 - MIR3 SINE MIR -5 203 33 1618 58 10 0 chr4 126603681 126603888 -75724459 - L1PA7 LINE L1 -13 6141 5933 466 274 47 0 chr4 126604157 126604263 -75724084 - L2 LINE L2 -14 3299 3189 909 244 19 0 chr4 126604264 126604473 -75723874 - MER58A DNA MER1_type -1 223 11 292 267 0 0 chr4 126604473 126604533 -75723814 - L2 LINE L2 -823 2491 2432 237 219 179 97 chr4 126604572 126604752 -75723595 - L2 LINE L2 -1496 1818 1619 1601 138 109 14 chr4 126604752 126605035 -75723312 + AluSx SINE Alu 1 310 -2 237 219 179 97 chr4 126605035 126605050 -75723297 - L2 LINE L2 -1695 1619 1607 562 100 20 20 chr4 126605050 126605150 -75723197 + (GAAA)n Simple_repeat Simple_repeat 1 100 0 1998 158 0 0 chr4 126605207 126605499 -75722848 + AluJb SINE Alu 9 300 -12 320 303 22 0 chr4 126605500 126605589 -75722758 - L2 LINE L2 -1791 1523 1433 1329 83 0 0 chr4 126606576 126606744 -75721603 - AluSg/x SINE Alu -16 296 129 182 257 14 68 chr4 126607048 126607122 -75721225 + MIR SINE MIR 75 144 -64 424 325 66 41 chr4 126607638 126607835 -75720512 + MIR SINE MIR 5 206 -56 22 0 0 0 chr4 126609731 126609753 -75718594 + AT_rich Low_complexity Low_complexity 1 22 0 245 209 35 58 chr4 126609995 126610081 -75718266 - MLT1K LTR MaLR 0 588 505 468 231 98 54 chr4 126610539 126610742 -75717605 + MIR SINE MIR 5 216 -46 236 320 0 13 chr4 126611652 126611727 -75716620 + L2 LINE L2 3017 3090 -182 207 268 49 37 chr4 126611746 126611828 -75716519 + L2 LINE L2 3220 3302 -11 * 249 299 15 0 chr4 126611802 126611869 -75716478 - L2 LINE L2 0 3313 3246 283 360 54 40 chr4 126612225 126612503 -75715844 + L2 LINE L2 1297 1578 -1736 1027 157 60 69 chr4 126612656 126612872 -75715475 - MER20 DNA MER1_type -4 215 2 439 200 61 17 chr4 126613648 126613763 -75714584 + MIR SINE MIR 1 120 -142 246 62 0 0 chr4 126613825 126613857 -75714490 + (CAT)n Simple_repeat Simple_repeat 2 33 0 2460 32 0 49 chr4 126614133 126614441 -75713906 - AluY SINE Alu -18 293 1 366 287 103 40 chr4 126616179 126616353 -75711994 + MIR SINE MIR 28 212 -50 430 262 213 41 chr4 126616511 126616732 -75711615 + MIR SINE MIR 1 259 -3 827 294 48 0 chr4 126617502 126617730 -75710617 - MIR SINE MIR 0 262 24 542 199 102 82 chr4 126668417 126668613 -75659734 + L2 LINE L2 3113 3312 -1 252 0 0 0 chr4 126669312 126669340 -75659007 + (A)n Simple_repeat Simple_repeat 1 28 0 1613 143 59 37 chr4 126670173 126670494 -75657853 - THE1C LTR MaLR 0 375 48 23 33 0 0 chr4 126670596 126670626 -75657721 + AT_rich Low_complexity Low_complexity 1 30 0 324 255 60 76 chr4 126670726 126670748 -75657599 - L2 LINE L2 -5 3308 3287 2290 96 0 3 chr4 126670748 126671049 -75657298 - AluSx SINE Alu -12 300 1 324 255 60 76 chr4 126671049 126671102 -75657245 - L2 LINE L2 -26 3287 3235 1786 126 66 33 chr4 126671102 126671467 -75656880 + L1MA8 LINE L1 5912 6288 -3 324 255 60 76 chr4 126671467 126671574 -75656773 - L2 LINE L2 -78 3235 3128 555 162 9 36 chr4 126671915 126672026 -75656321 + LTR16B LTR ERVL 357 464 0 347 204 150 18 chr4 126672028 126672141 -75656206 - L2 LINE L2 -167 3146 3019 381 356 73 24 chr4 126672259 126672548 -75655799 - L2 LINE L2 -858 2456 2154 203 136 23 23 chr4 126672927 126672971 -75655376 + T-rich Low_complexity Low_complexity 2 45 0 775 231 26 1 chr4 126673065 126673245 -75655102 - L1ME1 LINE L1 -2 6182 5991 2023 207 163 18 chr4 126673247 126673821 -75654526 + MLT1E2 LTR MaLR 1 626 0 308 184 42 22 chr4 126673835 126673972 -75654375 - L1ME1 LINE L1 -193 5973 5789 2875 155 45 43 chr4 126674141 126674904 -75653443 - L1MB4 LINE L1 -303 6375 5611 * 4554 228 90 15 chr4 126674902 126675184 -75653163 - L1MB4 LINE L1 -2113 4531 4272 2004 138 0 26 chr4 126675184 126675495 -75652852 - AluSg SINE Alu -7 303 1 4554 228 90 15 chr4 126675495 126675544 -75652803 - L1MB4 LINE L1 -2372 4272 4228 2906 133 21 0 chr4 126675544 126676026 -75652321 - L1MB2 LINE L1 -1 6170 5679 4554 228 90 15 chr4 126676026 126677145 -75651202 - L1MB4 LINE L1 -2416 4228 2971 426 241 35 21 chr4 126677139 126677280 -75651067 - L1MB4 LINE L1 -6386 156 14 * 213 39 0 0 chr4 126677334 126677360 -75650987 + (CAA)n Simple_repeat Simple_repeat 2 27 0 318 211 116 11 chr4 126677678 126677773 -75650574 - L1ME4a LINE L1 -22 6099 5995 201 184 61 0 chr4 126678227 126678276 -75650071 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 201 289 19 0 chr4 126678463 126678515 -75649832 + L2 LINE L2 3211 3263 -9 1715 174 13 13 chr4 126679713 126680024 -75648323 - AluJb SINE Alu -1 311 1 355 308 17 0 chr4 126680525 126680645 -75647702 - L1ME1 LINE L1 -468 5653 5532 220 241 0 35 chr4 126682427 126682514 -75645833 + T-rich Low_complexity Low_complexity 1 84 0 2013 142 7 0 chr4 126682946 126683241 -75645106 - AluSx SINE Alu -15 297 1 217 214 0 0 chr4 126683275 126683317 -75645030 + (TG)n Simple_repeat Simple_repeat 1 42 0 342 298 121 0 chr4 126683348 126683472 -75644875 - MIR SINE MIR -44 218 80 1176 88 0 0 chr4 126684281 126684428 -75643919 - AluSc SINE Alu -14 295 149 865 197 7 7 chr4 126684520 126684672 -75643675 + FRAM SINE Alu 4 155 -21 1750 150 4 0 chr4 126684864 126685131 -75643216 - AluSx SINE Alu -44 268 1 275 325 193 51 chr4 126685182 126685591 -75642756 - L2 LINE L2 0 3272 2806 217 368 90 18 chr4 126685644 126685867 -75642480 - L2 LINE L2 -654 2660 2422 749 187 0 22 chr4 126686011 126686145 -75642202 - FLAM_A SINE Alu -2 131 1 25 0 0 0 chr4 126686384 126686409 -75641938 + AT_rich Low_complexity Low_complexity 1 25 0 424 154 0 0 chr4 126688104 126688169 -75640178 - AluS SINE Alu -239 74 10 809 285 74 39 chr4 126688170 126688703 -75639644 + L2 LINE L2 2648 3202 -111 408 179 60 0 chr4 126689122 126689239 -75639108 + CT-rich Low_complexity Low_complexity 4 127 0 694 204 8 8 chr4 126689240 126689372 -75638975 - FLAM_C SINE Alu 0 133 2 2209 108 3 0 chr4 126689382 126689678 -75638669 - AluSx SINE Alu -15 297 1 22 0 0 0 chr4 126691645 126691667 -75636680 + AT_rich Low_complexity Low_complexity 1 22 0 2339 74 3 3 chr4 126692076 126692375 -75635972 + AluY SINE Alu 1 299 -12 329 294 81 64 chr4 126692717 126692952 -75635395 - MIR SINE MIR -3 259 21 33 0 0 0 chr4 126694201 126694234 -75634113 + AT_rich Low_complexity Low_complexity 1 33 0 1396 193 56 35 chr4 126694527 126694812 -75633535 - AluJo SINE Alu -21 291 1 294 215 56 9 chr4 126695430 126695537 -75632810 - L1M4 LINE L1 -1729 4417 4306 2574 243 67 38 chr4 126695585 126696198 -75632149 - L1M4 LINE L1 -1944 4202 3608 2372 62 23 7 chr4 126696198 126696504 -75631843 - AluY SINE Alu 0 311 1 2574 243 67 38 chr4 126696504 126697224 -75631123 - L1M4 LINE L1 -2538 3608 2908 312 295 66 18 chr4 126697228 126697394 -75630953 - L1MEc LINE L1 -5908 488 315 2214 127 0 0 chr4 126697671 126697978 -75630369 + AluSg SINE Alu 1 307 -3 274 293 0 12 chr4 126698012 126698094 -75630253 - MER112 DNA MER1_type -178 82 2 1110 264 39 15 chr4 126698473 126698806 -75629541 + Charlie2 DNA MER1_type 1 341 -2521 227 159 0 43 chr4 126698832 126698901 -75629446 + Charlie2 DNA MER1_type 2238 2303 -559 23 33 0 0 chr4 126699047 126699077 -75629270 + AT_rich Low_complexity Low_complexity 1 30 0 3518 134 47 20 chr4 126699140 126699795 -75628552 + L1MA4 LINE L1 5621 6293 -7 347 266 35 17 chr4 126699845 126700018 -75628329 + HAL1 LINE L1 2241 2416 -91 451 265 83 83 chr4 126700079 126700381 -75627966 + LTR33A LTR ERVL 7 308 -215 23 33 0 0 chr4 126700473 126700503 -75627844 + AT_rich Low_complexity Low_complexity 1 30 0 961 175 0 0 chr4 126700524 126700678 -75627669 - FRAM SINE Alu -9 157 4 1945 162 54 46 chr4 126700783 126701264 -75627083 + MER31A LTR ERV1 1 485 0 27 49 0 0 chr4 126701678 126701719 -75626628 + AT_rich Low_complexity Low_complexity 1 41 0 26 30 0 0 chr4 126701971 126702004 -75626343 + AT_rich Low_complexity Low_complexity 1 33 0 211 225 0 0 chr4 126702031 126702071 -75626276 + A-rich Low_complexity Low_complexity 5 44 0 1802 169 121 12 chr4 126702391 126702812 -75625535 + MLT1C LTR MaLR 1 467 0 812 252 185 54 chr4 126703699 126704473 -75623874 + L2 LINE L2 2337 3308 -5 2100 128 0 3 chr4 126705574 126705871 -75622476 - AluSx SINE Alu -16 296 1 256 333 13 0 chr4 126705876 126705954 -75622393 + L2 LINE L2 3186 3264 -8 753 119 0 0 chr4 126706080 126706189 -75622158 + AluSp/q SINE Alu 192 300 -13 619 290 81 9 chr4 126706189 126706410 -75621937 - L2 LINE L2 -657 2657 2421 184 176 0 0 chr4 126706451 126706485 -75621862 - L2 LINE L2 -990 2324 2291 21 57 0 0 chr4 126707007 126707042 -75621305 + AT_rich Low_complexity Low_complexity 1 35 0 2033 124 8 77 chr4 126707175 126707537 -75620810 + MER1B DNA MER1_type 1 337 0 231 307 66 58 chr4 126708370 126708507 -75619840 - L2 LINE L2 -1 3312 3175 2151 110 7 7 chr4 126709148 126709438 -75618909 + AluSq SINE Alu 1 290 -23 3874 304 84 46 chr4 126709947 126709996 -75618351 - L2 LINE L2 -13 3300 3254 1420 173 48 75 chr4 126709996 126710371 -75617976 + MLT1A1 LTR MaLR 1 365 0 3874 304 84 46 chr4 126710371 126711097 -75617250 - L2 LINE L2 -59 3254 2557 2049 124 0 0 chr4 126711097 126711401 -75616946 + AluSx SINE Alu 1 304 0 3874 304 84 46 chr4 126711401 126712923 -75615424 - L2 LINE L2 -756 2557 911 666 89 0 11 chr4 126712930 126713020 -75615327 - AluSg/x SINE Alu -18 294 206 454 286 169 0 chr4 126713022 126713176 -75615171 + MER5A DNA MER1_type 9 188 -1 271 184 0 0 chr4 126713176 126713214 -75615133 + MIR SINE MIR 212 249 -13 2083 123 7 7 chr4 126713482 126713775 -75614572 + AluSq SINE Alu 1 293 -20 181 328 62 0 chr4 126713799 126713863 -75614484 - L2 LINE L2 0 3313 3246 689 222 12 48 chr4 126714059 126714226 -75614121 - MER45A DNA AcHobo -3 175 15 2026 132 24 0 chr4 126714237 126714526 -75613821 - AluSg SINE Alu -14 296 1 4087 118 19 131 chr4 126714854 126716409 -75611938 - pTR5 LTR ERV1 0 2606 1524 391 261 56 24 chr4 126716998 126717096 -75611251 - MIR SINE MIR -64 144 46 3878 105 38 70 chr4 126717096 126717810 -75610537 + LTR8 LTR ERV1 1 691 0 391 261 56 24 chr4 126717810 126717839 -75610508 - MIR SINE MIR -162 46 19 210 37 0 0 chr4 126718172 126718199 -75610148 + (TG)n Simple_repeat Simple_repeat 2 28 0 45 55 0 0 chr4 126718245 126718318 -75610029 + AT_rich Low_complexity Low_complexity 1 73 0 21 71 0 0 chr4 126718408 126718450 -75609897 + AT_rich Low_complexity Low_complexity 1 42 0 502 259 61 5 chr4 126718656 126718868 -75609479 - L1M4 LINE L1 -1781 4365 4142 489 261 130 38 chr4 126718908 126719456 -75608891 - L1MDa LINE L1 -4594 1946 1349 1575 149 6 49 chr4 126719677 126720005 -75608342 + L1MB3 LINE L1 5859 6172 -11 22 0 0 0 chr4 126720023 126720045 -75608302 + AT_rich Low_complexity Low_complexity 1 22 0 7451 132 9 19 chr4 126720646 126721295 -75607052 - Tigger1 DNA MER2_type 0 2418 1764 320 0 25 0 chr4 126721295 126721335 -75607012 + (TTG)n Simple_repeat Simple_repeat 2 42 0 7451 132 9 19 chr4 126721335 126721736 -75606611 - Tigger1 DNA MER2_type -654 1764 1379 2329 75 0 0 chr4 126721736 126722038 -75606309 + AluY SINE Alu 1 302 0 7451 132 9 19 chr4 126722038 126722265 -75606082 - Tigger1 DNA MER2_type -1039 1379 1151 352 209 91 18 chr4 126722442 126722552 -75605795 - Charlie4 DNA MER1_type -4 1957 1840 21 0 0 0 chr4 126722742 126722763 -75605584 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 126724039 126724064 -75604283 + AT_rich Low_complexity Low_complexity 1 25 0 913 57 66 0 chr4 126724280 126724426 -75603921 - AluSg/x SINE Alu 0 310 157 239 188 0 0 chr4 126724484 126724548 -75603799 - L1MC4 LINE L1 -1339 6703 6640 265 323 32 11 chr4 126726519 126726612 -75601735 - L2 LINE L2 -10 3262 3168 241 227 160 40 chr4 126728508 126728583 -75599764 + L2 LINE L2 3184 3267 -5 391 298 79 17 chr4 126728927 126729105 -75599242 + L2 LINE L2 1973 2161 -1153 454 305 79 6 chr4 126729114 126729291 -75599056 + L2 LINE L2 2665 2854 -460 546 163 271 8 chr4 126729331 126729460 -75598887 + MER20 DNA MER1_type 7 169 -50 371 105 0 0 chr4 126729566 126729623 -75598724 + Alu SINE Alu 238 294 -8 910 159 13 13 chr4 126730900 126731057 -75597290 + AluSg/x SINE Alu 144 300 -12 7402 122 23 7 chr4 126731702 126733070 -75595277 + L1P4 LINE L1 4059 5453 -710 748 33 0 0 chr4 126733077 126733169 -75595178 + L1PA11 LINE L1 6057 6148 -26 202 28 28 28 chr4 126733169 126733205 -75595142 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 35434 89 11 10 chr4 126733623 126739088 -75589259 + L1P2 LINE L1 11 5481 -673 2148 104 0 44 chr4 126739088 126739404 -75588943 + AluY SINE Alu 1 302 -9 35434 89 11 10 chr4 126739404 126739556 -75588791 + L1P2 LINE L1 5481 5631 -523 1678 170 20 43 chr4 126740385 126740440 -75587907 + AluSx SINE Alu 1 56 -256 8321 52 3 0 chr4 126740440 126741403 -75586944 + LTR5 LTR ERVK 1 966 -3 1678 170 20 43 chr4 126741403 126741647 -75586700 + AluSx SINE Alu 56 293 -19 517 192 214 28 chr4 126742547 126742729 -75585618 - MIR SINE MIR -38 224 9 27 29 0 0 chr4 126742793 126742827 -75585520 + AT_rich Low_complexity Low_complexity 1 34 0 243 339 112 14 chr4 126743057 126743334 -75585013 - L2 LINE L2 -164 3108 2805 294 311 97 104 chr4 126744099 126744388 -75583959 - L2 LINE L2 -6 3266 2980 1081 153 0 0 chr4 126744631 126744807 -75583540 + L1MA2 LINE L1 6089 6264 -40 25 0 0 0 chr4 126745313 126745338 -75583009 + AT_rich Low_complexity Low_complexity 1 25 0 1526 128 9 5 chr4 126745419 126745638 -75582709 + AluSg/x SINE Alu 83 302 -10 3311 64 2 2 chr4 126746757 126747181 -75581166 + L1PA6 LINE L1 5728 6151 -3 2025 116 7 10 chr4 126747254 126747556 -75580791 + AluSp SINE Alu 9 309 -4 540 295 51 0 chr4 126748615 126748771 -75579576 + MIR3 SINE MIR 39 202 -6 26 50 0 0 chr4 126748778 126748818 -75579529 + AT_rich Low_complexity Low_complexity 1 40 0 254 274 0 0 chr4 126749011 126749073 -75579274 - L2 LINE L2 0 3313 3252 * 270 318 38 53 chr4 126749069 126749201 -75579146 + MIR SINE MIR 115 244 -18 274 304 33 22 chr4 126749243 126749335 -75579012 - MIR3 SINE MIR -51 157 65 362 327 60 30 chr4 126749496 126749664 -75578683 - MIR SINE MIR -70 192 20 347 324 107 91 chr4 126749771 126750287 -75578060 + L3 LINE CR1 630 1153 -424 727 310 93 32 chr4 126750750 126751063 -75577284 + L3 LINE CR1 1235 1566 -11 905 166 200 0 chr4 126751714 126751889 -75576458 - MER20 DNA MER1_type -6 213 4 240 337 56 0 chr4 126751926 126752015 -75576332 - L2 LINE L2 -460 2854 2761 1032 181 5 48 chr4 126752139 126752349 -75575998 + AluJo SINE Alu 90 290 -22 333 312 89 13 chr4 126752738 126752895 -75575452 - L2 LINE L2 -238 3034 2866 1714 167 30 0 chr4 126753051 126753321 -75575026 - AluJb SINE Alu -33 279 2 2335 89 0 3 chr4 126753391 126753695 -75574652 + AluSx SINE Alu 3 305 -7 580 171 0 0 chr4 126754385 126754473 -75573874 + AluJ/FLAM SINE Alu 3 90 -222 262 245 133 10 chr4 126755145 126755243 -75573104 + MIR SINE MIR 85 194 -68 2059 42 0 81 chr4 126755498 126755781 -75572566 - AluSx SINE Alu -31 281 22 290 261 65 0 chr4 126756611 126756724 -75571623 - MIR SINE MIR -24 184 60 332 309 136 0 chr4 126756826 126757017 -75571330 + MIR SINE MIR 32 248 -14 322 304 174 25 chr4 126757176 126757377 -75570970 - MIR SINE MIR -18 244 14 375 250 0 11 chr4 126757478 126757566 -75570781 + L2 LINE L2 2896 2982 -331 1291 241 0 32 chr4 126757588 126757903 -75570444 - L2 LINE L2 -477 2837 2533 256 172 46 185 chr4 126757916 126758154 -75570193 - L1MC5 LINE L1 -31 7930 7726 206 253 101 51 chr4 126758822 126758901 -75569446 + MIR SINE MIR 82 164 -98 1456 126 39 31 chr4 126759049 126759303 -75569044 - L1PB4 LINE L1 -6 6150 5895 240 269 0 15 chr4 126759377 126759444 -75568903 + MIR SINE MIR 196 261 -1 252 333 98 40 chr4 126759716 126759890 -75568457 + MER5A DNA MER1_type 6 189 0 252 292 80 7 chr4 126759992 126760129 -75568218 + L1ME4a LINE L1 5964 6110 -11 1466 167 0 54 chr4 126760243 126760501 -75567846 + AluJo SINE Alu 39 282 -30 26 30 0 0 chr4 126760976 126761009 -75567338 + AT_rich Low_complexity Low_complexity 1 33 0 288 0 0 0 chr4 126761436 126761468 -75566879 + (TAA)n Simple_repeat Simple_repeat 3 34 0 697 295 120 0 chr4 126761470 126761687 -75566660 - MIR SINE MIR -12 250 8 205 320 82 21 chr4 126762855 126762952 -75565395 - MIR3 SINE MIR -5 203 101 30 59 0 0 chr4 126765035 126765086 -75563261 + AT_rich Low_complexity Low_complexity 1 51 0 204 156 0 0 chr4 126765192 126765206 -75563141 + A-rich Low_complexity Low_complexity 1 14 -31 2690 26 0 6 chr4 126765206 126765519 -75562828 + AluY SINE Alu 1 311 0 204 156 0 0 chr4 126765519 126765549 -75562798 + A-rich Low_complexity Low_complexity 13 45 0 1443 179 7 58 chr4 126765554 126765862 -75562485 + AluJo SINE Alu 2 293 -19 3146 37 0 0 chr4 126766056 126766433 -75561914 - L1PA4 LINE L1 -2 6153 5777 194 281 47 0 chr4 126766656 126766720 -75561627 + L2 LINE L2 2992 3058 -214 5250 166 14 8 chr4 126766986 126767876 -75560471 + MER54A LTR ERVL 3 897 -4 273 291 118 54 chr4 126767978 126768181 -75560166 - L1ME LINE L1 -459 5645 5430 2747 176 50 17 chr4 126768211 126768750 -75559597 - MER68 LTR ERV1 0 562 6 2231 167 23 37 chr4 126768757 126769243 -75559104 - L1MB7 LINE L1 0 6184 5706 274 299 99 55 chr4 126769306 126769728 -75558619 - L1ME LINE L1 -2324 3805 3365 478 300 130 40 chr4 126770023 126770300 -75558047 - L1ME LINE L1 -4878 1241 940 439 239 210 7 chr4 126771426 126771564 -75556783 + MER8 DNA MER2_type 1 166 -73 357 191 16 0 chr4 126771552 126771615 -75556732 + MER2 DNA MER2_type 282 345 0 * 314 285 23 62 chr4 126771627 126771775 -75556572 - MIR SINE MIR -62 146 38 1582 185 10 32 chr4 126771913 126772227 -75556120 - AluJo SINE Alu -5 307 1 650 304 86 43 chr4 126772228 126772658 -75555689 + L2 LINE L2 2760 3207 -106 8060 110 64 7 chr4 126772746 126774019 -75554328 - Tigger1 DNA MER2_type 0 2418 1074 31 0 0 0 chr4 126774185 126774216 -75554131 + AT_rich Low_complexity Low_complexity 1 31 0 621 72 36 0 chr4 126774219 126774302 -75554045 - Tigger1 DNA MER2_type -1332 1086 1001 5645 160 29 19 chr4 126774342 126775350 -75552997 - Tigger1 DNA MER2_type -1400 1018 1 24 67 0 0 chr4 126775691 126775736 -75552611 + AT_rich Low_complexity Low_complexity 1 45 0 3570 242 115 19 chr4 126777942 126779304 -75549043 - L1MEc LINE L1 -4580 1816 324 525 233 67 22 chr4 126779323 126779546 -75548801 - Charlie2a DNA MER1_type -1268 1594 1362 1075 226 55 32 chr4 126779644 126779867 -75548480 - Charlie2a DNA MER1_type -1669 1193 977 2051 149 3 0 chr4 126779867 126780176 -75548171 + AluSq SINE Alu 3 312 -1 1075 226 55 32 chr4 126780176 126780385 -75547962 - Charlie2a DNA MER1_type -1885 977 751 676 266 95 21 chr4 126780518 126780759 -75547588 - MIR SINE MIR -2 260 2 357 325 56 16 chr4 126781158 126781284 -75547063 - MIR SINE MIR 0 262 132 1242 228 161 40 chr4 126782336 126782766 -75545581 - L2 LINE L2 -2 3311 2830 1017 229 159 44 chr4 126782780 126783260 -75545087 + MLT1G1 LTR MaLR 2 590 0 560 278 25 56 chr4 126783260 126783458 -75544889 - L2 LINE L2 -492 2822 2631 1021 261 83 74 chr4 126783910 126784355 -75543992 + L2 LINE L2 2865 3313 0 26 50 0 0 chr4 126784522 126784562 -75543785 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 126784608 126784629 -75543718 + AT_rich Low_complexity Low_complexity 1 21 0 283 159 0 0 chr4 126784888 126784932 -75543415 - Tigger4(Zombi) DNA MER2_type 0 2731 2688 283 159 0 0 chr4 126785092 126785136 -75543211 - Tigger4(Zombi) DNA MER2_type 0 2731 2688 2500 73 0 0 chr4 126786299 126786602 -75541745 - AluY SINE Alu -8 303 1 5292 65 4 0 chr4 126787546 126788228 -75540119 - L1PA7 LINE L1 0 6154 5470 27266 111 13 27 chr4 126788229 126792516 -75535831 - L1P LINE L1 -1905 4241 15 23 54 0 0 chr4 126793381 126793418 -75534929 + AT_rich Low_complexity Low_complexity 1 37 0 2089 123 7 0 chr4 126793798 126794100 -75534247 + AluSx SINE Alu 1 304 -8 263 280 333 11 chr4 126794693 126794882 -75533465 - MIR SINE MIR -12 250 1 867 125 0 0 chr4 126795144 126795264 -75533083 - THE1B LTR MaLR -1 363 244 2162 131 0 0 chr4 126795447 126795744 -75532603 + AluSx SINE Alu 1 297 -15 23 0 0 0 chr4 126796484 126796507 -75531840 + AT_rich Low_complexity Low_complexity 1 23 0 2172 119 3 7 chr4 126797399 126797709 -75530638 - AluSx SINE Alu -3 309 1 2425 162 30 14 chr4 126798775 126799202 -75529145 - Tigger2a DNA MER2_type 0 434 1 310 297 155 13 chr4 126799251 126799406 -75528941 - MER5B DNA MER1_type -1 177 1 377 255 154 67 chr4 126799582 126799739 -75528608 + L1ME1 LINE L1 529 671 -5725 2156 105 17 0 chr4 126799739 126800033 -75528314 + AluSc SINE Alu 1 299 -10 377 255 154 67 chr4 126800033 126800220 -75528127 + L1ME1 LINE L1 671 903 -5493 2500 201 186 15 chr4 126800263 126801197 -75527150 + L1ME1 LINE L1 5155 6230 -5 1339 138 10 0 chr4 126801424 126801654 -75526693 + AluSg/x SINE Alu 87 318 0 2258 207 141 37 chr4 126801825 126803017 -75525330 - L1ME3 LINE L1 -3 6159 4837 24 53 0 0 chr4 126803067 126803105 -75525242 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr4 126803167 126803188 -75525159 + AT_rich Low_complexity Low_complexity 1 21 0 2762 22 0 12 chr4 126803835 126804154 -75524193 + AluYb8 SINE Alu 1 315 -3 579 252 26 26 chr4 126805163 126805318 -75523029 + MIR SINE MIR 6 160 -102 22 80 0 0 chr4 126805539 126805589 -75522758 + AT_rich Low_complexity Low_complexity 1 50 0 263 164 45 8 chr4 126805885 126806019 -75522328 + (TA)n Simple_repeat Simple_repeat 2 140 0 27 49 0 0 chr4 126806020 126806061 -75522286 + AT_rich Low_complexity Low_complexity 1 41 0 1499 177 8 12 chr4 126806075 126806329 -75522018 - AluJo SINE Alu -41 271 19 27 0 0 0 chr4 126806338 126806365 -75521982 + AT_rich Low_complexity Low_complexity 1 27 0 624 259 68 30 chr4 126806704 126806984 -75521363 - L1ME LINE L1 -422 5699 5392 1881 119 45 0 chr4 126808480 126808748 -75519599 - AluSx SINE Alu -30 282 3 1584 184 3 30 chr4 126809074 126809379 -75518968 + AluJo SINE Alu 1 297 -15 345 245 217 14 chr4 126809478 126809621 -75518726 + MIR SINE MIR 91 262 0 22 0 0 0 chr4 126809853 126809875 -75518472 + AT_rich Low_complexity Low_complexity 1 22 0 42871 33 21 3 chr4 126810089 126816176 -75512171 - L1PA2 LINE L1 0 6155 1 639 314 100 14 chr4 126816710 126817079 -75511268 - MLT1I LTR MaLR -8 401 1 4055 160 12 0 chr4 126817854 126818542 -75509805 - L1MB3 LINE L1 -9 6174 5479 249 362 156 34 chr4 126819281 126820285 -75508062 - L2 LINE L2 -349 2965 1839 372 154 46 0 chr4 126820286 126820351 -75507996 + L1MC4 LINE L1 7835 7902 -140 736 76 19 0 chr4 126820732 126820837 -75507510 + L1MB4 LINE L1 6074 6180 0 1773 151 72 50 chr4 126824085 126824334 -75504013 - Charlie1a DNA MER1_type -1695 1066 803 2373 88 0 3 chr4 126824334 126824640 -75503707 + AluSp SINE Alu 1 305 -8 1773 151 72 50 chr4 126824640 126824794 -75503553 - Charlie1a DNA MER1_type -1958 803 654 * 1824 189 85 12 chr4 126824784 126825186 -75503161 - Charlie1a DNA MER1_type -1024 431 1 452 278 225 0 chr4 126826079 126826288 -75502059 + MIR SINE MIR 2 257 -5 348 269 81 67 chr4 126826337 126826486 -75501861 - MIR SINE MIR -66 196 46 314 248 234 15 chr4 126827092 126827229 -75501118 - MIR SINE MIR -17 245 79 563 216 29 0 chr4 126827423 126827525 -75500822 + FLAM_A SINE Alu 5 109 -33 27 62 0 0 chr4 126827527 126827575 -75500772 + AT_rich Low_complexity Low_complexity 1 48 0 220 211 0 0 chr4 126829105 126829143 -75499204 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 1215 174 119 0 chr4 126831372 126831625 -75496722 - MER58B DNA MER1_type -1 340 58 2526 166 104 8 chr4 126832061 126832530 -75495817 - MLT2B1 LTR ERVL -6 514 1 675 198 68 52 chr4 126834122 126834314 -75494033 + MIR SINE MIR 68 262 0 437 143 7 162 chr4 126834950 126835006 -75493341 - L1MB8 LINE L1 0 6178 6115 1589 168 22 4 chr4 126835006 126835274 -75493073 + AluJb SINE Alu 1 273 -39 437 143 7 162 chr4 126835274 126835371 -75492976 - L1MB8 LINE L1 -63 6115 6049 2303 160 39 30 chr4 126835379 126835873 -75492474 - L1ME1 LINE L1 -298 5868 5371 2183 60 0 11 chr4 126836016 126836281 -75492066 + AluY SINE Alu 35 296 -15 1572 165 9 50 chr4 126836287 126836608 -75491739 + AluJo SINE Alu 1 308 -4 243 0 0 0 chr4 126836718 126836745 -75491602 + (T)n Simple_repeat Simple_repeat 1 27 0 234 283 33 65 chr4 126837497 126837589 -75490758 - L2 LINE L2 -52 3220 3132 672 208 130 0 chr4 126839074 126839228 -75489119 - MER45A DNA AcHobo -1 177 4 597 256 40 17 chr4 126839354 126839530 -75488817 - MIR3 SINE MIR -10 198 19 1006 158 7 0 chr4 126840194 126840346 -75488001 + AluJb SINE Alu 137 289 -23 438 124 268 21 chr4 126841456 126841553 -75486794 - L2 LINE L2 0 3313 3193 1832 129 13 46 chr4 126841688 126841990 -75486357 + AluSx SINE Alu 1 292 -20 366 258 103 0 chr4 126842881 126842978 -75485369 - MIR3 SINE MIR -15 193 87 477 272 98 67 chr4 126843460 126844030 -75484317 + L2 LINE L2 2650 3220 -52 602 143 80 154 chr4 126844480 126844609 -75483738 - MER33 DNA MER1_type -2261 324 226 795 161 0 0 chr4 126844609 126844727 -75483620 - FLAM_C SINE Alu -15 118 1 602 143 80 154 chr4 126844727 126844883 -75483464 - MER33 DNA MER1_type -2359 226 60 601 284 149 0 chr4 126845736 126845951 -75482396 - MIR SINE MIR -5 257 11 437 206 9 0 chr4 126846141 126846248 -75482099 + L1MB8 LINE L1 6066 6173 -5 2037 276 119 30 chr4 126846415 126847444 -75480903 - L2 LINE L2 0 3313 2192 1192 112 31 0 chr4 126847594 126847755 -75480592 - AluSq SINE Alu -125 188 23 709 357 101 23 chr4 126847772 126848015 -75480332 - L2 LINE L2 -1047 2267 2044 204 40 0 0 chr4 126848015 126848040 -75480307 + (GAA)n Simple_repeat Simple_repeat 2 26 0 709 357 101 23 chr4 126848040 126848410 -75479937 - L2 LINE L2 -1270 2044 1606 2533 113 68 0 chr4 126848558 126848958 -75479389 + MSTA LTR MaLR 1 427 -1 568 362 60 35 chr4 126849400 126849864 -75478483 - L2 LINE L2 -2418 896 421 194 257 92 101 chr4 126850827 126850936 -75477411 - L2 LINE L2 -465 2849 2742 455 259 18 72 chr4 126851960 126852126 -75476221 - MIR SINE MIR -102 160 4 17440 33 2 0 chr4 126852297 126855080 -75473267 + L1PA2 LINE L1 3156 5943 -212 242 156 0 47 chr4 126855182 126855246 -75473101 + L1MB4 LINE L1 5170 5230 -916 821 193 25 10 chr4 126855252 126855449 -75472898 + L1MB4 LINE L1 5979 6178 -2 695 149 26 0 chr4 126855658 126855772 -75472575 - AluJb SINE Alu -195 117 1 909 170 52 0 chr4 126856981 126857134 -75471213 - AluJb SINE Alu -15 297 137 283 286 181 0 chr4 126857225 126857330 -75471017 + L2 LINE L2 2952 3075 -238 1859 73 13 0 chr4 126907361 126907593 -75420754 - AluY SINE Alu -76 235 1 1370 210 3 50 chr4 126908548 126908678 -75419669 + L1MD3 LINE L1 7651 7786 -209 2262 80 13 10 chr4 126908678 126908978 -75419369 + AluY SINE Alu 1 301 -10 1370 210 3 50 chr4 126908978 126909209 -75419138 + L1MD3 LINE L1 7786 7995 0 286 276 8 98 chr4 126909280 126909365 -75418982 - L2 LINE L2 -1 3312 3240 1892 109 0 4 chr4 126909365 126909631 -75418716 + AluSq SINE Alu 1 265 -48 286 276 8 98 chr4 126909631 126909668 -75418679 - L2 LINE L2 -73 3240 3201 219 36 0 0 chr4 126909868 126909896 -75418451 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1320 157 0 15 chr4 126909902 126910106 -75418241 - AluJo SINE Alu -41 271 71 887 180 41 5 chr4 126910121 126910315 -75418032 + L1MB4 LINE L1 5790 5990 -190 2165 125 14 3 chr4 126910346 126910643 -75417704 - AluSx SINE Alu -12 300 1 291 167 28 93 chr4 126910647 126910755 -75417592 + L1ME1 LINE L1 5782 5882 -284 1816 155 0 23 chr4 126910889 126911193 -75417154 - AluJb SINE Alu -15 297 1 209 313 83 19 chr4 126912414 126912589 -75415758 - MIR SINE MIR -50 212 31 330 302 16 40 chr4 126912650 126912776 -75415571 + L2 LINE L2 2307 2429 -885 608 180 8 0 chr4 126912812 126912940 -75415407 - L1MA9 LINE L1 -5 6307 6179 840 173 123 92 chr4 126912950 126913140 -75415207 + MER4C LTR ERV1 1 184 -281 2155 124 51 23 chr4 126913140 126913494 -75414853 - THE1B LTR MaLR 0 364 1 840 173 123 92 chr4 126913494 126913958 -75414389 + MER4C LTR ERV1 184 465 0 3939 160 43 2 chr4 126913977 126914776 -75413571 - L1MA9 LINE L1 -153 6159 5329 1525 292 43 23 chr4 126914826 126915062 -75413285 + L2 LINE L2 2444 2674 -639 1777 157 3 10 chr4 126915062 126915355 -75412992 - AluJb SINE Alu -21 291 1 2030 106 3 14 chr4 126915363 126915700 -75412647 - AluSc SINE Alu 0 334 1 1525 292 43 23 chr4 126915700 126916147 -75412200 + L2 LINE L2 2680 3156 -157 465 212 30 8 chr4 126916352 126916484 -75411863 - L1ME2 LINE L1 -266 5898 5764 397 271 30 23 chr4 126916486 126916619 -75411728 + MLT1I LTR MaLR 227 360 -49 269 326 11 0 chr4 126916644 126916736 -75411611 + L2 LINE L2 3221 3313 0 2327 74 3 3 chr4 126917143 126917439 -75410908 - AluSx SINE Alu -16 296 1 300 181 0 28 chr4 126917450 126917522 -75410825 - L1MB8 LINE L1 -2 6176 6107 1820 148 10 17 chr4 126917533 126917824 -75410523 - AluSx SINE Alu -23 289 1 477 282 27 0 chr4 126917824 126917973 -75410374 - L1ME1 LINE L1 -55 6111 5959 2413 92 3 13 chr4 126918378 126918694 -75409653 - AluSq SINE Alu 0 313 1 23 33 0 0 chr4 126918811 126918841 -75409506 + AT_rich Low_complexity Low_complexity 1 30 0 1828 177 0 25 chr4 126918987 126919463 -75408884 + AluJo SINE Alu 1 468 0 296 200 13 0 chr4 126919615 126919690 -75408657 + GA-rich Low_complexity Low_complexity 3 78 0 434 259 196 0 chr4 126919780 126919938 -75408409 - MIR SINE MIR -7 255 67 290 293 32 80 chr4 126919970 126920158 -75408189 + L2 LINE L2 2825 3003 -269 1792 141 53 0 chr4 126920991 126921274 -75407073 + AluSq SINE Alu 1 298 -15 1858 165 3 13 chr4 126921302 126921605 -75406742 + AluJo SINE Alu 1 300 -12 2242 117 3 0 chr4 126922783 126923091 -75405256 + AluSx SINE Alu 1 309 -3 2250 94 3 0 chr4 126925734 126926020 -75402327 + AluSp SINE Alu 16 302 -11 26 82 0 0 chr4 126926091 126926152 -75402195 + AT_rich Low_complexity Low_complexity 1 61 0 2096 125 0 3 chr4 126928916 126929213 -75399134 - AluY SINE Alu -15 296 1 258 317 130 6 chr4 126929283 126929444 -75398903 - MIR SINE MIR -77 185 5 26 30 0 0 chr4 126929591 126929624 -75398723 + AT_rich Low_complexity Low_complexity 1 33 0 1083 68 0 8 chr4 126929630 126929762 -75398585 + AluSp SINE Alu 1 131 -182 1651 171 4 4 chr4 126929862 126930113 -75398234 - AluJo SINE Alu -61 251 1 441 229 121 51 chr4 126930693 126930850 -75397497 + MIR SINE MIR 47 214 -48 596 78 0 0 chr4 126931282 126931359 -75396988 + Alu SINE Alu 1 77 -233 1384 146 65 65 chr4 126932180 126932342 -75396005 - MER2 DNA MER2_type -21 324 160 706 191 0 8 chr4 126932342 126932468 -75395879 + FLAM_C SINE Alu 1 125 -8 1384 146 65 65 chr4 126932468 126932627 -75395720 - MER2 DNA MER2_type -184 161 3 207 0 0 0 chr4 126932627 126932650 -75395697 + (TG)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr4 126934836 126934858 -75393489 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 126934869 126934891 -75393456 + AT_rich Low_complexity Low_complexity 1 22 0 1863 150 67 29 chr4 126935671 126936045 -75392302 - MLT1B LTR MaLR -2 388 1 201 279 103 0 chr4 126937791 126937859 -75390488 - L2 LINE L2 0 3313 3239 28 29 0 0 chr4 126938140 126938175 -75390172 + AT_rich Low_complexity Low_complexity 1 35 0 2093 129 3 3 chr4 126939776 126940085 -75388262 + AluSx SINE Alu 1 309 -3 206 418 67 0 chr4 126940664 126940798 -75387549 + L2 LINE L2 3122 3264 -8 22 0 0 0 chr4 126940886 126940908 -75387439 + AT_rich Low_complexity Low_complexity 1 22 0 673 233 91 32 chr4 126940944 126941163 -75387184 - MIR SINE MIR -29 233 2 334 271 42 42 chr4 126941200 126941318 -75387029 - MIR SINE MIR -18 244 127 853 281 110 51 chr4 126941789 126941850 -75386497 + L2 LINE L2 2658 2714 -599 2051 85 25 18 chr4 126941850 126942152 -75386195 + AluSx SINE Alu 1 304 0 853 281 110 51 chr4 126942152 126942680 -75385667 + L2 LINE L2 2714 3291 -22 209 246 15 0 chr4 126942686 126942751 -75385596 + GA-rich Low_complexity Low_complexity 2 67 0 455 289 146 14 chr4 126943198 126943398 -75384949 - MIR SINE MIR -8 254 37 1498 167 49 66 chr4 126944850 126945003 -75383344 + MER2 DNA MER2_type 4 158 -187 940 121 0 0 chr4 126945003 126945135 -75383212 + FLAM_C SINE Alu 2 133 0 1498 167 49 66 chr4 126945135 126945328 -75383019 + MER2 DNA MER2_type 158 344 -1 325 333 36 18 chr4 126947066 126947234 -75381113 - MIR3 SINE MIR -6 202 32 235 224 0 0 chr4 126947701 126947750 -75380597 - L2 LINE L2 -2 3311 3263 245 319 213 8 chr4 126947823 126948077 -75380270 + L2 LINE L2 1903 2208 -1106 702 173 131 93 chr4 126949611 126949923 -75378424 - MER33 DNA MER1_type 0 324 1 372 243 246 46 chr4 126951517 126951797 -75376550 + L3 LINE CR1 332 667 -910 * 454 259 141 24 chr4 126951795 126951965 -75376382 - MIR SINE MIR 0 262 73 548 280 161 19 chr4 126952122 126952383 -75375964 + L3 LINE CR1 797 1094 -483 282 282 114 23 chr4 126952443 126952500 -75375847 + L3 LINE CR1 1290 1340 -237 2261 79 17 3 chr4 126952500 126952790 -75375557 + AluSx SINE Alu 1 294 -18 282 282 114 23 chr4 126952790 126952863 -75375484 + L3 LINE CR1 1340 1432 -145 555 338 164 34 chr4 126952869 126954147 -75374200 - L2 LINE L2 -6 3266 1801 34 24 0 0 chr4 126954186 126954227 -75374120 + AT_rich Low_complexity Low_complexity 1 41 0 183 347 0 0 chr4 126954429 126954478 -75373869 + L3 LINE CR1 1447 1495 -82 326 248 295 17 chr4 126954513 126954703 -75373644 + MIR SINE MIR 1 234 -28 208 255 20 0 chr4 126954674 126954725 -75373622 + L2 LINE L2 3251 3302 -11 * 196 286 157 34 chr4 126955113 126955260 -75373087 + L3 LINE CR1 790 954 -623 1550 147 63 0 chr4 126955415 126955667 -75372680 - AluJb SINE Alu -10 302 35 211 259 122 38 chr4 126955667 126955798 -75372549 - L3 LINE CR1 -289 1288 1147 2241 81 3 7 chr4 126955937 126956233 -75372114 - AluSx SINE Alu -17 295 1 589 194 0 54 chr4 126956261 126956390 -75371957 - FLAM_A SINE Alu 0 142 21 2575 95 73 2 chr4 126956404 126956826 -75371521 + L1PA16 LINE L1 5579 6030 -136 1342 116 14 9 chr4 126956831 126957047 -75371300 + Tigger1 DNA MER2_type 116 332 -2086 228 67 0 0 chr4 126957047 126957077 -75371270 + (A)n Simple_repeat Simple_repeat 1 30 0 800 115 62 0 chr4 126957077 126957207 -75371140 + L1PA16 LINE L1 6023 6160 -6 213 230 338 0 chr4 126958300 126958374 -75369973 - L2 LINE L2 -18 3295 3197 27 0 0 0 chr4 126958651 126958678 -75369669 + AT_rich Low_complexity Low_complexity 1 27 0 2072 139 17 0 chr4 126959366 126959668 -75368679 + AluSq SINE Alu 1 307 -6 245 226 16 0 chr4 126959812 126959874 -75368473 + Charlie8 DNA MER1_type 185 247 -2170 2322 86 3 13 chr4 126961616 126961917 -75366430 - AluSx SINE Alu -13 299 2 224 235 0 98 chr4 126964877 126964979 -75363368 + L2 LINE L2 2701 2792 -522 1941 111 47 4 chr4 126966135 126966414 -75361933 + AluSx SINE Alu 7 297 -15 1938 134 43 0 chr4 126966764 126967041 -75361306 + AluSx SINE Alu 1 289 -23 486 88 0 0 chr4 126967043 126967111 -75361236 + (TA)n Simple_repeat Simple_repeat 2 69 0 2180 133 0 0 chr4 126967696 126967998 -75360349 + AluSx SINE Alu 1 302 -10 2018 126 126 23 chr4 126968985 126969205 -75359142 - MSTB1 LTR MaLR 0 432 236 2222 113 7 7 chr4 126969205 126969505 -75358842 - AluSc SINE Alu -9 300 1 2018 126 126 23 chr4 126969505 126969673 -75358674 - MSTB1 LTR MaLR -196 236 4 287 211 0 0 chr4 126969942 126969999 -75358348 + MER5A DNA MER1_type 61 117 -72 258 318 45 0 chr4 126970355 126970443 -75357904 + L2 LINE L2 3162 3253 -19 284 221 81 0 chr4 126970444 126970530 -75357817 - MLT1H LTR MaLR -3 546 454 666 269 36 49 chr4 126970593 126970901 -75357446 - MLT1H LTR MaLR -244 305 2 768 142 0 0 chr4 126971904 126972017 -75356330 - AluJ SINE Alu -19 293 181 283 298 41 16 chr4 126972053 126972174 -75356173 - MLT1H LTR MaLR -403 146 23 226 54 0 54 chr4 126972183 126972220 -75356127 + Alu SINE Alu 19 53 -122 942 166 55 22 chr4 126972236 126972417 -75355930 - AluJ SINE Alu -125 187 1 315 0 0 0 chr4 126972489 126972524 -75355823 + (TG)n Simple_repeat Simple_repeat 2 36 0 1649 215 126 58 chr4 126973383 126973790 -75354557 + MLT2F LTR ERVL 3 381 -282 2163 103 10 0 chr4 126973790 126974082 -75354265 - AluSg SINE Alu -15 295 1 1649 215 126 58 chr4 126974082 126974122 -75354225 + MLT2F LTR ERVL 381 417 -246 2438 124 57 5 chr4 126974122 126974525 -75353822 + MSTA LTR MaLR 5 428 0 1649 215 126 58 chr4 126974525 126974630 -75353717 + MLT2F LTR ERVL 417 514 -149 2450 150 25 11 chr4 126974630 126975069 -75353278 - MER65A LTR ERV1 0 445 1 1649 215 126 58 chr4 126975069 126975095 -75353252 + MLT2F LTR ERVL 514 622 -41 344 240 27 62 chr4 126975096 126975242 -75353105 + (TCTCTG)n Simple_repeat Simple_repeat 4 144 0 227 95 71 0 chr4 126975250 126975292 -75353055 + MLT2F LTR ERVL 619 663 0 491 69 0 0 chr4 126975487 126975559 -75352788 - AluSc SINE Alu -2 307 236 462 211 0 0 chr4 126975948 126976038 -75352309 + FRAM SINE Alu 63 152 -24 961 86 22 29 chr4 126976107 126976246 -75352101 + AluJo SINE Alu 23 160 -152 594 179 7 90 chr4 126976253 126976398 -75351949 - FLAM_C SINE Alu 0 133 1 1980 103 11 0 chr4 126976434 126976707 -75351640 + AluSx SINE Alu 2 277 -35 979 232 0 5 chr4 126976709 126976916 -75351431 + AluJo SINE Alu 76 281 -31 219 36 0 0 chr4 126976916 126976944 -75351403 + (CTAG)n Simple_repeat Simple_repeat 1 28 0 1325 126 0 29 chr4 126977667 126977896 -75350451 - AluSq SINE Alu 0 313 96 1135 138 6 0 chr4 126977934 126978101 -75350246 - AluSp SINE Alu -12 301 134 2354 114 0 0 chr4 126978101 126978407 -75349940 - AluSx SINE Alu -6 306 1 6258 129 25 3 chr4 126978743 126979841 -75348506 + L1MC1 LINE L1 5187 6309 -24 1992 137 3 0 chr4 126980301 126980586 -75347761 - AluJb SINE Alu -16 296 11 1962 191 73 40 chr4 126980681 126981225 -75347122 - MER21B LTR ERV1 -27 836 275 345 276 115 26 chr4 126982499 126982655 -75345692 - L2 LINE L2 -23 3290 3121 1228 41 0 0 chr4 126982664 126982853 -75345494 + L1PA7 LINE L1 5991 6179 0 1901 138 29 0 chr4 126983002 126983297 -75345050 - AluSx SINE Alu 0 304 2 851 135 7 7 chr4 126983540 126983681 -75344666 + AluSg/x SINE Alu 167 307 -3 238 321 19 57 chr4 126984129 126984235 -75344112 - MIR SINE MIR -76 132 31 1834 160 10 19 chr4 126984306 126984618 -75343729 + AluJo SINE Alu 1 309 -3 23 0 0 0 chr4 126984622 126984645 -75343702 + AT_rich Low_complexity Low_complexity 1 23 0 218 213 21 0 chr4 126985425 126985472 -75342875 + (CATA)n Simple_repeat Simple_repeat 3 50 0 22 35 0 0 chr4 126985620 126985649 -75342698 + AT_rich Low_complexity Low_complexity 1 29 0 253 325 26 8 chr4 126986249 126986366 -75341981 + L1ME LINE L1 5484 5602 -519 606 323 124 38 chr4 126986712 126987317 -75341030 + L2 LINE L2 1979 2747 -566 2486 82 0 0 chr4 126987317 126987622 -75340725 - AluSg SINE Alu -5 305 1 606 323 124 38 chr4 126987622 126987941 -75340406 + L2 LINE L2 2747 3037 -276 23 33 0 0 chr4 126989185 126989215 -75339132 + AT_rich Low_complexity Low_complexity 1 30 0 231 36 0 0 chr4 126989226 126989254 -75339093 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 718 181 9 0 chr4 126989254 126989370 -75338977 - FAM SINE Alu -29 156 40 677 151 0 63 chr4 126989387 126989538 -75338809 + FLAM_C SINE Alu 1 143 0 2237 114 3 29 chr4 126989649 126989965 -75338382 - AluSc SINE Alu -1 308 1 672 158 0 0 chr4 126990249 126990350 -75337997 - AluSg/x SINE Alu -33 279 179 1813 131 6 108 chr4 126990461 126990804 -75337543 + AluSx SINE Alu 1 308 -4 475 188 111 17 chr4 126990808 126990925 -75337422 + FLAM_A SINE Alu 1 128 -5 1381 201 44 62 chr4 126992038 126992937 -75335410 + L1MB8 LINE L1 5112 6176 -2 1520 102 9 5 chr4 126993108 126993323 -75335024 - AluSg/x SINE Alu -1 309 94 2149 134 0 13 chr4 126993352 126993528 -75334819 - AluSx SINE Alu -3 309 137 2298 108 3 0 chr4 126993528 126993833 -75334514 - AluSp SINE Alu -7 306 1 2149 134 0 13 chr4 126993833 126993969 -75334378 - AluSx SINE Alu -175 137 1 245 266 16 0 chr4 126995461 126995525 -75332822 + MIR SINE MIR 21 85 -177 188 239 30 15 chr4 126995874 126995941 -75332406 + MIR SINE MIR 85 152 -56 278 118 0 0 chr4 126996211 126996262 -75332085 + AluSp/q SINE Alu 251 301 -2 2002 106 14 3 chr4 126997108 126997410 -75330937 + AluSq SINE Alu 1 305 0 1778 168 14 0 chr4 126998199 126998491 -75329856 + AluSx SINE Alu 2 297 -15 1507 170 0 4 chr4 126998669 126998940 -75329407 - AluSx SINE Alu -9 303 34 1241 169 42 46 chr4 126999041 126999348 -75328999 + L1MB8 LINE L1 5871 6176 -2 885 64 0 0 chr4 126999436 126999545 -75328802 + AluSq/x SINE Alu 1 109 -203 1500 146 0 16 chr4 126999545 126999791 -75328556 + AluSg/x SINE Alu 71 312 0 304 206 0 0 chr4 127000794 127000862 -75327485 - MER116 DNA Mariner -12 68 1 22 0 0 0 chr4 127000875 127000897 -75327450 + AT_rich Low_complexity Low_complexity 1 22 0 2134 134 7 3 chr4 127001301 127001607 -75326740 - AluSx SINE Alu -5 307 1 512 68 0 0 chr4 127001741 127001815 -75326532 + Alu SINE Alu 238 311 0 244 254 0 0 chr4 127001832 127001887 -75326460 - MIR SINE MIR -34 228 174 2244 101 13 3 chr4 127001910 127002216 -75326131 + AluSc SINE Alu 1 309 0 2115 92 0 0 chr4 127002877 127003150 -75325197 + AluSc SINE Alu 1 273 -36 198 0 0 0 chr4 127003416 127003438 -75324909 + (CA)n Simple_repeat Simple_repeat 1 22 0 381 143 0 0 chr4 127003553 127003609 -75324738 - Tigger5 DNA MER2_type -5 2318 2263 435 203 0 0 chr4 127003632 127003711 -75324636 + Tigger5 DNA MER2_type 2241 2319 -4 315 203 54 14 chr4 127003713 127003787 -75324560 - Tigger5 DNA MER2_type -2246 77 1 1321 152 9 4 chr4 127003850 127004080 -75324267 + MER46A DNA MER2_type 6 236 0 605 226 55 24 chr4 127006160 127006324 -75322023 + MIR SINE MIR 21 189 -73 281 263 25 68 chr4 127007215 127007333 -75321014 - L2 LINE L2 -17 3296 3184 352 299 84 48 chr4 127007379 127007888 -75320459 + LTR33A LTR ERVL 23 523 0 378 169 15 0 chr4 127008282 127008347 -75320000 - Tigger5 DNA MER2_type -2 2321 2256 2125 107 20 0 chr4 127008350 127008650 -75319697 + AluSq SINE Alu 1 306 -7 389 195 24 0 chr4 127008846 127008928 -75319419 + MSTA LTR MaLR 1 84 -344 1010 205 39 109 chr4 127008929 127009314 -75319033 + MLT1A2 LTR MaLR 17 374 0 660 193 50 110 chr4 127009684 127009902 -75318445 + MER3 DNA MER1_type 1 205 -4 2272 147 53 26 chr4 127009971 127010386 -75317961 + MSTB LTR MaLR 1 426 0 186 283 22 0 chr4 127010641 127010687 -75317660 + L2 LINE L2 3221 3267 -5 2441 94 0 0 chr4 127011020 127011329 -75317018 - AluSq SINE Alu -4 309 1 298 145 81 32 chr4 127011747 127011871 -75316476 + (TTATA)n Simple_repeat Simple_repeat 1 130 0 578 160 7 28 chr4 127012730 127012874 -75315473 + CT-rich Low_complexity Low_complexity 2 142 0 1827 177 0 25 chr4 127012890 127013206 -75315141 - AluJo SINE Alu -4 308 1 23 33 0 0 chr4 127013353 127013383 -75314964 + AT_rich Low_complexity Low_complexity 1 30 0 2356 101 3 13 chr4 127013499 127013815 -75314532 + AluSq SINE Alu 1 313 0 28 61 0 0 chr4 127014409 127014458 -75313889 + AT_rich Low_complexity Low_complexity 1 49 0 195 125 0 0 chr4 127016592 127016632 -75311715 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 3933 153 39 11 chr4 127016667 127017420 -75310927 - L1MD1 LINE L1 0 6242 5469 1345 152 16 94 chr4 127017421 127017730 -75310617 - AluJb SINE Alu -14 298 14 679 187 30 0 chr4 127017896 127018030 -75310317 + MER54A LTR ERVL 488 625 -276 848 200 31 10 chr4 127018034 127018229 -75310118 - L1MC/D LINE L1 -450 5792 5594 1392 206 7 18 chr4 127018235 127018521 -75309826 + MER54A LTR ERVL 618 900 -1 868 181 29 20 chr4 127018533 127018801 -75309546 - L1MC/D LINE L1 -743 5403 5172 2262 113 3 0 chr4 127018801 127019102 -75309245 - AluSx SINE Alu -10 302 1 868 181 29 20 chr4 127019102 127019132 -75309215 - L1MC/D LINE L1 -974 5172 5144 434 279 177 53 chr4 127019205 127019785 -75308562 + L2 LINE L2 2469 3169 -144 483 63 0 0 chr4 127020359 127020422 -75307925 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 2274 110 3 7 chr4 127020426 127020771 -75307576 - AluSg SINE Alu 0 344 1 322 247 14 14 chr4 127021097 127021170 -75307177 + L3 LINE CR1 558 630 -947 366 271 252 25 chr4 127022325 127022433 -75305914 + L1M4 LINE L1 2770 2852 -3294 2183 130 7 0 chr4 127022433 127022734 -75305613 + AluSx SINE Alu 1 303 -9 366 271 252 25 chr4 127022734 127022785 -75305562 + L1M4 LINE L1 2852 2890 -3256 1456 195 17 40 chr4 127022785 127023082 -75305265 + AluJo SINE Alu 18 307 -5 366 271 252 25 chr4 127023082 127023213 -75305134 + L1M4 LINE L1 2890 2990 -3156 2146 136 0 0 chr4 127023213 127023514 -75304833 + AluSx SINE Alu 1 301 -11 366 271 252 25 chr4 127023514 127023586 -75304761 + L1M4 LINE L1 2990 3217 -2929 404 304 163 18 chr4 127023939 127024166 -75304181 - MIR SINE MIR -1 261 2 384 288 57 64 chr4 127024174 127024367 -75303980 + L3 LINE CR1 661 853 -724 2062 103 7 10 chr4 127024367 127024681 -75303666 + AluSg SINE Alu 1 310 0 384 288 57 64 chr4 127024681 127024751 -75303596 + L3 LINE CR1 853 922 -655 368 218 105 38 chr4 127024768 127024861 -75303486 - LTR33 LTR ERVL -2 519 434 2093 153 60 24 chr4 127024861 127025010 -75303337 + MSTB1 LTR MaLR 1 143 -289 2260 102 0 3 chr4 127025010 127025305 -75303042 - AluSq SINE Alu -15 298 5 2093 153 60 24 chr4 127025305 127025555 -75302792 + MSTB1 LTR MaLR 143 418 -14 348 24 0 0 chr4 127025555 127025596 -75302751 + (CA)n Simple_repeat Simple_repeat 2 42 0 2093 153 60 24 chr4 127025596 127025612 -75302735 + MSTB1 LTR MaLR 418 432 0 368 218 105 38 chr4 127025612 127025651 -75302696 - LTR33 LTR ERVL -87 434 378 439 298 36 12 chr4 127025734 127025902 -75302445 - LTR33 LTR ERVL -348 173 2 350 331 161 45 chr4 127025914 127026473 -75301874 + L3 LINE CR1 944 1567 -10 340 277 128 21 chr4 127026933 127027005 -75301342 + L1ME4a LINE L1 5910 5973 -148 192 40 0 0 chr4 127027005 127027030 -75301317 + (TA)n Simple_repeat Simple_repeat 2 26 0 340 277 128 21 chr4 127027030 127027145 -75301202 + L1ME4a LINE L1 5973 6117 -4 283 348 54 0 chr4 127027821 127027933 -75300414 - MER5B DNA MER1_type -60 118 1 1036 225 116 10 chr4 127028883 127029176 -75299171 + MLT1C LTR MaLR 144 467 0 281 326 22 0 chr4 127029180 127029272 -75299075 - MIR SINE MIR -87 175 82 * 377 333 151 28 chr4 127029270 127029724 -75298623 + L2 LINE L2 2648 3201 -112 740 173 101 54 chr4 127029733 127029981 -75298366 + AluJb SINE Alu 1 303 -9 208 311 66 66 chr4 127029991 127030097 -75298250 + L2 LINE L2 3161 3266 -6 297 75 0 0 chr4 127030982 127031022 -75297325 + (TG)n Simple_repeat Simple_repeat 1 40 0 197 132 26 0 chr4 127031182 127031220 -75297127 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 894 213 0 29 chr4 127031243 127031417 -75296930 - FAM SINE Alu -3 172 4 5540 100 27 2 chr4 127031493 127032354 -75295993 + L1PA14 LINE L1 5280 6161 0 2267 101 7 3 chr4 127032489 127032795 -75295552 + AluSq SINE Alu 1 307 -6 204 257 86 14 chr4 127033292 127033362 -75294985 + L2 LINE L2 3239 3313 0 574 321 96 48 chr4 127033453 127033990 -75294357 + L2 LINE L2 2716 3271 -1 834 320 50 38 chr4 127035113 127035532 -75292815 + MLT1E LTR MaLR 22 445 -148 586 284 101 50 chr4 127035612 127036076 -75292271 + L1ME3A LINE L1 347 834 -5285 283 233 194 0 chr4 127036747 127036850 -75291497 - L2 LINE L2 -871 2443 2321 254 289 41 41 chr4 127037296 127037493 -75290854 + MER65A LTR ERV1 249 445 0 311 342 8 0 chr4 127037499 127037616 -75290731 - L1M4 LINE L1 -2505 3641 3524 1221 287 70 13 chr4 127037780 127038439 -75289908 + L2 LINE L2 2616 3309 -4 505 223 16 31 chr4 127038439 127038632 -75289715 + L1ME3A LINE L1 3777 3966 -2163 363 281 155 63 chr4 127038634 127039015 -75289332 + L1ME3A LINE L1 4493 4908 -1221 1760 220 37 26 chr4 127039018 127039508 -75288839 + MLT1D LTR MaLR 1 495 -10 468 258 213 4 chr4 127039508 127039776 -75288571 + L1ME3A LINE L1 4906 5229 -900 921 289 80 20 chr4 127039790 127040440 -75287907 + L1ME3A LINE L1 5242 5930 -223 29 47 0 0 chr4 127040842 127040885 -75287462 + AT_rich Low_complexity Low_complexity 1 43 0 2113 123 31 47 chr4 127040971 127041352 -75286995 - THE1C LTR MaLR 0 375 1 439 45 105 0 chr4 127042376 127042509 -75285838 + (TA)n Simple_repeat Simple_repeat 2 148 0 2425 68 0 0 chr4 127042641 127042934 -75285413 - AluY SINE Alu -18 293 1 40 67 0 0 chr4 127043006 127043081 -75285266 + AT_rich Low_complexity Low_complexity 1 75 0 224 182 0 18 chr4 127044439 127044494 -75283853 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 534 135 0 0 chr4 127044531 127044627 -75283720 + L1MA5 LINE L1 6200 6295 -5 497 266 0 9 chr4 127045117 127045230 -75283117 + L2 LINE L2 3197 3308 -5 489 388 38 22 chr4 127045241 127045792 -75282555 + L2 LINE L2 2710 3270 -2 1938 170 13 0 chr4 127045955 127046255 -75282092 + AluJb SINE Alu 1 304 -8 453 176 49 35 chr4 127047410 127047552 -75280795 + L1MA7 LINE L1 6092 6235 -56 928 133 39 0 chr4 127047427 127047607 -75280740 + L1MA5 LINE L1 6114 6300 0 1514 207 39 32 chr4 127047607 127048372 -75279975 + L1M4c LINE L1 1452 2313 -4071 21 36 0 0 chr4 127048499 127048527 -75279820 + AT_rich Low_complexity Low_complexity 1 28 0 366 246 109 36 chr4 127048914 127049024 -75279323 - L2 LINE L2 -1 3312 3195 1902 126 0 0 chr4 127049148 127049418 -75278929 - AluSx SINE Alu -42 270 1 299 297 30 64 chr4 127049852 127049961 -75278386 - L2 LINE L2 -1 3312 3212 2109 117 0 0 chr4 127049961 127050259 -75278088 - AluSq SINE Alu -15 298 1 299 297 30 64 chr4 127050259 127050351 -75277996 - L2 LINE L2 -101 3212 3118 672 151 0 0 chr4 127050746 127050852 -75277495 - AluSg/x SINE Alu -1 311 206 1936 125 4 0 chr4 127051242 127051523 -75276824 + AluSg SINE Alu 1 282 -28 2038 96 11 0 chr4 127052333 127052615 -75275732 - AluSp SINE Alu -26 287 3 272 129 161 0 chr4 127053034 127053096 -75275251 + AluJb SINE Alu 46 117 -185 402 219 0 21 chr4 127053155 127053251 -75275096 + FRAM SINE Alu 65 158 -18 963 61 0 30 chr4 127053311 127053442 -75274905 + AluJo SINE Alu 23 149 -163 612 162 7 88 chr4 127053464 127053600 -75274747 - FLAM_C SINE Alu -4 129 5 1883 106 11 0 chr4 127053640 127053913 -75274434 + AluSx SINE Alu 2 277 -35 890 234 0 5 chr4 127053918 127054123 -75274224 + AluJo SINE Alu 78 281 -31 183 42 0 0 chr4 127054123 127054147 -75274200 + (CTAG)n Simple_repeat Simple_repeat 1 24 0 196 233 82 68 chr4 127054683 127054756 -75273591 + MIR SINE MIR 105 178 -84 2011 110 7 3 chr4 127054983 127055273 -75273074 - AluSx SINE Alu -21 291 1 2180 117 0 13 chr4 127055487 127055666 -75272681 - AluSx SINE Alu 0 312 137 2081 123 3 0 chr4 127055666 127055967 -75272380 - AluSp SINE Alu -11 302 1 2180 117 0 13 chr4 127055967 127056103 -75272244 - AluSx SINE Alu -175 137 1 269 250 16 0 chr4 127057558 127057622 -75270725 + MIR SINE MIR 21 85 -177 209 239 30 15 chr4 127057971 127058038 -75270309 + MIR SINE MIR 85 152 -56 298 137 0 0 chr4 127058308 127058359 -75269988 + AluSp/q SINE Alu 251 301 -2 1956 116 13 3 chr4 127059218 127059519 -75268828 + AluSq SINE Alu 1 304 -9 1807 158 10 0 chr4 127060308 127060606 -75267741 + AluSx SINE Alu 2 302 -10 2046 128 0 3 chr4 127060783 127061089 -75267258 - AluSx SINE Alu -7 305 1 1418 217 178 2 chr4 127061120 127061548 -75266799 - MLT1D LTR MaLR -2 503 1 1263 146 53 56 chr4 127061676 127061978 -75266369 - AluSx SINE Alu -11 301 1 1627 80 0 0 chr4 127062666 127062879 -75265468 - AluSg/x SINE Alu -13 296 84 1597 174 4 4 chr4 127063322 127063634 -75264713 - AluSx SINE Alu 0 318 7 1975 125 7 10 chr4 127063949 127064252 -75264095 - AluSq SINE Alu -11 302 1 1956 135 10 3 chr4 127064467 127064778 -75263569 - AluSq SINE Alu 0 313 1 1536 188 88 19 chr4 127065911 127066230 -75262117 + MSTD LTR MaLR 1 341 -55 615 179 11 28 chr4 127066254 127066433 -75261914 + CT-rich Low_complexity Low_complexity 4 179 0 351 194 0 0 chr4 127066433 127066500 -75261847 + MSTD LTR MaLR 330 396 0 848 205 42 121 chr4 127066985 127067317 -75261030 - L1MC4 LINE L1 -938 7080 6718 1814 71 0 0 chr4 127069033 127069257 -75259090 - AluSq SINE Alu -87 226 3 237 33 0 0 chr4 127069579 127069609 -75258738 + (TG)n Simple_repeat Simple_repeat 2 31 0 1554 197 0 0 chr4 127069610 127069894 -75258453 - AluJb SINE Alu -28 284 1 997 138 0 0 chr4 127070315 127070460 -75257887 - AluJb SINE Alu -38 274 130 546 193 0 64 chr4 127070471 127070580 -75257767 - MER8 DNA MER2_type -134 105 4 628 175 29 0 chr4 127070800 127070903 -75257444 + U6 snRNA snRNA 2 107 0 358 271 19 103 chr4 127070945 127071069 -75257278 - L1MC4 LINE L1 -2118 5690 5590 535 171 65 41 chr4 127071069 127071192 -75257155 + FLAM_C SINE Alu 4 129 -4 358 271 19 103 chr4 127071192 127071281 -75257066 - L1MC4 LINE L1 -2218 5590 5495 2064 109 7 0 chr4 127071351 127071645 -75256702 - AluSg SINE Alu -14 296 1 1350 204 29 29 chr4 127071692 127072001 -75256346 - AluJo SINE Alu -1 311 3 32 26 0 0 chr4 127072071 127072110 -75256237 + AT_rich Low_complexity Low_complexity 1 39 0 372 263 14 28 chr4 127072216 127072373 -75255974 - L1MC3 LINE L1 -1931 5877 5723 1209 232 7 26 chr4 127072410 127072712 -75255635 + AluJo SINE Alu 1 296 -16 665 200 0 0 chr4 127072714 127072834 -75255513 + AluJb SINE Alu 185 304 -8 216 0 0 0 chr4 127072959 127072983 -75255364 + (T)n Simple_repeat Simple_repeat 1 24 0 207 203 47 31 chr4 127073220 127073284 -75255063 + (GGGTG)n Simple_repeat Simple_repeat 1 65 0 272 296 112 50 chr4 127073504 127073683 -75254664 - MIR SINE MIR -64 198 9 7151 111 20 17 chr4 127073738 127074806 -75253541 - MER11C LTR ERVK 0 1071 1 2837 228 79 41 chr4 127074823 127075107 -75253240 - MER21B LTR ERV1 -58 805 533 1666 171 0 10 chr4 127075107 127075412 -75252935 - AluJo SINE Alu -10 302 1 2837 228 79 41 chr4 127075412 127075722 -75252625 - MER21B LTR ERV1 -330 533 173 1874 150 0 3 chr4 127075722 127076015 -75252332 + AluSq SINE Alu 1 292 -21 2837 228 79 41 chr4 127076015 127076177 -75252170 - MER21B LTR ERV1 -690 173 19 307 307 0 0 chr4 127076199 127076274 -75252073 - MER21B LTR ERV1 -773 90 16 1486 198 0 7 chr4 127076274 127076562 -75251785 - AluJo SINE Alu -13 299 14 1541 193 14 56 chr4 127076574 127076931 -75251416 + MLT1D LTR MaLR 162 503 -2 1399 191 25 14 chr4 127076952 127077076 -75251271 + AluJo SINE Alu 10 131 -181 2054 100 34 0 chr4 127077076 127077367 -75250980 + AluSg1 SINE Alu 1 301 -8 1399 191 25 14 chr4 127077367 127077525 -75250822 + AluJo SINE Alu 131 295 -17 1442 263 78 30 chr4 127077525 127078134 -75250213 - L2 LINE L2 -216 3097 2458 712 211 0 0 chr4 127078233 127078366 -75249981 + FLAM_C SINE Alu 1 133 0 22 0 0 0 chr4 127078366 127078388 -75249959 + AT_rich Low_complexity Low_complexity 1 22 0 1131 208 8 4 chr4 127078431 127078672 -75249675 + AluJo SINE Alu 45 286 -26 332 245 11 11 chr4 127078829 127078923 -75249424 + LTR37A LTR ERV1 240 333 -93 2040 136 0 3 chr4 127079134 127079442 -75248905 - AluSq SINE Alu -6 307 1 1487 189 20 20 chr4 127079744 127080046 -75248301 - AluJo SINE Alu -10 302 1 2795 189 40 35 chr4 127080067 127080686 -75247661 - L1MB8 LINE L1 -5 6173 5552 670 184 0 0 chr4 127080686 127080795 -75247552 + FLAM_A SINE Alu 4 112 -30 491 164 8 102 chr4 127080831 127080919 -75247428 - L1ME LINE L1 -577 5589 5505 1568 178 10 10 chr4 127080919 127081211 -75247136 - AluJb SINE Alu -20 292 1 491 164 8 102 chr4 127081211 127081242 -75247105 - L1ME LINE L1 -661 5505 5473 592 200 0 127 chr4 127081300 127081361 -75246986 + AluJo SINE Alu 24 91 -221 279 104 0 0 chr4 127081361 127081409 -75246938 + (TTG)n Simple_repeat Simple_repeat 1 48 0 1696 146 22 7 chr4 127081409 127081684 -75246663 - AluSx SINE Alu -33 279 1 592 200 0 127 chr4 127081684 127081786 -75246561 + AluJo SINE Alu 89 167 -145 1380 164 124 25 chr4 127081799 127082074 -75246273 - AluJo SINE Alu 0 302 1 1278 238 0 14 chr4 127082321 127082615 -75245732 - AluJo SINE Alu -18 294 5 372 195 25 132 chr4 127082616 127082775 -75245572 - MLT1D LTR MaLR -292 213 72 207 280 129 11 chr4 127082839 127082932 -75245415 - L2 LINE L2 -27 3286 3183 231 328 39 52 chr4 127082959 127083188 -75245159 - L2 LINE L2 -211 3061 2836 1551 192 0 13 chr4 127083549 127083856 -75244491 - AluJb SINE Alu -9 303 1 2233 88 3 0 chr4 127083942 127084238 -75244109 - AluSp SINE Alu -16 297 1 21 36 0 0 chr4 127084238 127084266 -75244081 + AT_rich Low_complexity Low_complexity 1 28 0 1744 150 0 7 chr4 127084278 127084564 -75243783 - AluJb SINE Alu -18 294 11 3000 133 9 2 chr4 127084930 127085372 -75242975 + MER1A DNA MER1_type 56 500 -29 689 205 0 0 chr4 127085375 127085492 -75242855 - FLAM_C SINE Alu -18 125 9 519 139 58 0 chr4 127085533 127085640 -75242707 + AluJb SINE Alu 194 305 0 204 250 96 10 chr4 127085940 127086044 -75242303 - L2 LINE L2 -211 3061 2949 310 351 36 0 chr4 127086319 127086430 -75241917 - MIR SINE MIR -75 187 73 2601 239 50 37 chr4 127086593 127086838 -75241509 - MER21B LTR ERV1 -112 751 511 1356 200 38 3 chr4 127086838 127087128 -75241219 - AluJo SINE Alu -12 300 1 2601 239 50 37 chr4 127087128 127087198 -75241149 - MER21B LTR ERV1 -352 511 443 1451 189 3 49 chr4 127087198 127087505 -75240842 + AluJb SINE Alu 2 294 -18 2601 239 50 37 chr4 127087505 127087912 -75240435 - MER21B LTR ERV1 -420 443 19 330 268 0 0 chr4 127087938 127088009 -75240338 - MER21B LTR ERV1 -777 86 16 1029 174 3 118 chr4 127088009 127088297 -75240050 - AluJb SINE Alu -13 299 45 716 208 0 0 chr4 127088297 127088417 -75239930 - FLAM_A SINE Alu -13 120 1 644 228 0 7 chr4 127088422 127088558 -75239789 - FLAM_C SINE Alu -7 136 2 1570 184 22 70 chr4 127088558 127088917 -75239430 + MLT1D LTR MaLR 162 503 -2 1597 178 23 13 chr4 127088920 127089054 -75239293 + AluJo SINE Alu 1 132 -180 2090 99 0 14 chr4 127089054 127089377 -75238970 + AluSq SINE Alu 1 313 0 1597 178 23 13 chr4 127089377 127089551 -75238796 + AluJo SINE Alu 132 312 0 1209 229 90 73 chr4 127089552 127090193 -75238154 - L2 LINE L2 -213 3100 2458 582 224 0 0 chr4 127090299 127090415 -75237932 + FLAM_C SINE Alu 9 124 -19 1274 215 10 10 chr4 127090439 127090737 -75237610 + AluJo SINE Alu 1 298 -14 1993 122 0 7 chr4 127090895 127091189 -75237158 + AluSx SINE Alu 5 296 -16 241 222 153 5 chr4 127091232 127091421 -75236926 + Charlie1 DNA MER1_type 2539 2755 -6 1302 198 8 4 chr4 127091475 127091743 -75236604 - AluJo SINE Alu -4 308 40 956 197 0 6 chr4 127092343 127092526 -75235821 - AluJb SINE Alu -14 298 117 367 235 39 49 chr4 127092526 127092628 -75235719 - MER8 DNA MER2_type -136 103 3 1540 180 0 13 chr4 127092739 127093039 -75235308 + AluJo SINE Alu 1 296 -16 456 218 9 27 chr4 127093277 127093387 -75234960 + FLAM_C SINE Alu 11 118 -25 313 235 39 39 chr4 127093399 127093501 -75234846 - L1ME LINE L1 -537 5584 5483 1414 188 49 10 chr4 127093629 127093917 -75234430 - AluJb SINE Alu -13 299 1 379 189 0 135 chr4 127093920 127094068 -75234279 + LTR41 LTR ERVL 640 767 -6 2534 138 64 19 chr4 127094339 127094759 -75233588 + MER1A DNA MER1_type 1 439 -90 2178 116 0 0 chr4 127099852 127100154 -75228193 + AluSg SINE Alu 1 302 -8 214 180 11 79 chr4 127100388 127100477 -75227870 + (CAGGG)n Simple_repeat Simple_repeat 3 85 0 418 161 0 0 chr4 127103232 127103323 -75225024 - AluSq SINE Alu 0 320 230 860 159 21 7 chr4 127103325 127103470 -75224877 - AluSq SINE Alu -161 151 5 960 236 21 35 chr4 127103477 127103925 -75224422 - L1M2 LINE L1 -4226 2563 2037 2191 107 3 23 chr4 127103925 127104235 -75224112 - AluSg SINE Alu -6 304 1 960 236 21 35 chr4 127104235 127104316 -75224031 - L1M2 LINE L1 -4752 2037 1956 705 168 0 0 chr4 127104337 127104438 -75223909 - FLAM_C SINE Alu -40 103 3 433 78 0 0 chr4 127104442 127104493 -75223854 + AluJ/FLAM SINE Alu 29 79 -233 218 321 37 25 chr4 127105368 127105449 -75222898 - MIR SINE MIR -178 84 3 648 202 54 23 chr4 127106230 127106359 -75221988 - MER46A DNA MER2_type -102 134 2 3018 182 18 12 chr4 127106562 127107122 -75221225 - L1PB4 LINE L1 0 6156 5594 225 325 68 10 chr4 127107700 127107906 -75220441 - L1M4 LINE L1 -1007 5139 4922 22 35 0 0 chr4 127108988 127109017 -75219330 + AT_rich Low_complexity Low_complexity 1 29 0 23715 138 8 20 chr4 127111421 127115789 -75212558 - L1P4 LINE L1 -442 5726 1422 2059 191 65 63 chr4 127115810 127116314 -75212033 - MLT1D LTR MaLR 0 505 1 3025 146 51 9 chr4 127116370 127116904 -75211443 - L1MC1 LINE L1 -1 6332 5777 230 408 0 0 chr4 127117281 127117384 -75210963 - MIR SINE MIR -50 212 110 441 190 331 14 chr4 127117522 127117664 -75210683 + MER5A DNA MER1_type 2 188 -1 767 220 112 14 chr4 127118909 127119132 -75209215 - MIR SINE MIR -8 254 10 257 323 10 10 chr4 127120222 127120318 -75208029 + L1ME4a LINE L1 5712 5807 -2001 325 306 61 17 chr4 127120383 127120563 -75207784 + L1ME4a LINE L1 5926 6113 -8 437 250 147 29 chr4 127121181 127121385 -75206962 - MIR SINE MIR -30 232 5 1696 159 34 7 chr4 127121654 127121949 -75206398 + AluJo SINE Alu 1 303 -9 260 268 124 0 chr4 127122078 127122175 -75206172 + HERVL LTR ERVL 4152 4260 -1504 702 338 57 18 chr4 127122177 127123048 -75205299 + HERVL LTR ERVL 4232 5241 -523 24 32 0 0 chr4 127123107 127123138 -75205209 + AT_rich Low_complexity Low_complexity 1 31 0 744 315 92 34 chr4 127124353 127124855 -75203492 - L1MEd LINE L1 -5315 804 274 1196 220 99 7 chr4 127124856 127125138 -75203209 + MER65A LTR ERV1 1 308 -137 305 236 61 81 chr4 127125343 127125491 -75202856 + MER65A LTR ERV1 301 445 0 511 246 134 0 chr4 127125501 127125672 -75202675 - L1MEd LINE L1 -5855 264 71 370 330 218 10 chr4 127125787 127125993 -75202354 + L2 LINE L2 2922 3170 -102 4223 118 48 3 chr4 127126712 127126763 -75201584 - L1MA6 LINE L1 -10 6290 6243 212 0 36 0 chr4 127126763 127126791 -75201556 + (TA)n Simple_repeat Simple_repeat 2 30 0 4223 118 48 3 chr4 127126791 127127381 -75200966 - L1MA6 LINE L1 -57 6243 5620 839 212 0 6 chr4 127127408 127127573 -75200774 - FRAM SINE Alu -18 158 1 210 91 0 0 chr4 127127631 127127664 -75200683 + (GA)n Simple_repeat Simple_repeat 1 33 0 1351 167 139 0 chr4 127127916 127128174 -75200173 + AluJo SINE Alu 6 299 -13 223 309 12 25 chr4 127130662 127130743 -75197604 + L2 LINE L2 3173 3252 -20 216 222 0 19 chr4 127131438 127131492 -75196855 - MIR SINE MIR -142 120 68 229 250 61 53 chr4 127134867 127134958 -75193389 + L1ME4a LINE L1 5978 6072 -49 1807 149 0 47 chr4 127134958 127135279 -75193068 - AluSq SINE Alu -7 306 1 229 250 61 53 chr4 127135279 127135319 -75193028 + L1ME4a LINE L1 6072 6110 -11 318 298 48 69 chr4 127135777 127135965 -75192382 + MIR3 SINE MIR 22 205 -3 215 125 0 0 chr4 127136386 127136418 -75191929 + L2 LINE L2 3269 3300 -13 1805 138 43 0 chr4 127136738 127137014 -75191333 - AluSx SINE Alu -17 295 8 448 265 129 105 chr4 127140934 127141391 -75186956 - L2 LINE L2 -673 2641 2174 28 29 0 0 chr4 127141432 127141467 -75186880 + AT_rich Low_complexity Low_complexity 1 35 0 288 311 20 20 chr4 127141866 127142017 -75186330 + LTR16C LTR ERVL 340 490 -1 1637 176 0 17 chr4 127142849 127143150 -75185197 + AluJo SINE Alu 1 296 -16 461 225 7 78 chr4 127143388 127143530 -75184817 + AluJo SINE Alu 11 142 -170 285 244 12 24 chr4 127143530 127143612 -75184735 - L1ME LINE L1 -558 5563 5483 1442 192 53 11 chr4 127143746 127144027 -75184320 - AluJb SINE Alu -19 293 1 366 189 0 135 chr4 127144030 127144178 -75184169 + LTR41 LTR ERVL 640 767 -6 2499 141 64 19 chr4 127144449 127144869 -75183478 + MER1A DNA MER1_type 1 439 -90 2162 107 0 7 chr4 127149898 127150196 -75178151 + AluSg SINE Alu 1 296 -14 313 395 39 35 chr4 127150551 127150807 -75177540 + L1M2 LINE L1 994 1250 -5599 1837 163 25 25 chr4 127151952 127152356 -75175991 + L1MB2 LINE L1 5759 6162 -9 182 340 28 38 chr4 127152948 127153054 -75175293 + L2 LINE L2 2220 2324 -990 454 140 43 120 chr4 127153579 127153647 -75174700 - L1MB2 LINE L1 -27 6144 6072 2267 100 0 0 chr4 127153647 127153937 -75174410 + AluSq SINE Alu 1 290 -23 454 140 43 120 chr4 127153937 127154030 -75174317 - L1MB2 LINE L1 -99 6072 5987 221 393 14 21 chr4 127154096 127154241 -75174106 - L3 LINE CR1 -3 1574 1431 2318 121 19 22 chr4 127154256 127154621 -75173726 + THE1B LTR MaLR 1 364 0 836 79 0 24 chr4 127154621 127154747 -75173600 + THE1B-int LTR MaLR 1 123 -1457 5654 88 41 1 chr4 127154756 127155554 -75172793 + THE1B-int LTR MaLR 751 1580 0 2282 126 22 22 chr4 127155554 127155918 -75172429 + THE1B LTR MaLR 1 364 0 617 345 58 24 chr4 127155918 127156298 -75172049 - L3 LINE CR1 -180 1397 1005 474 275 15 117 chr4 127156525 127156798 -75171549 - LTR16C LTR ERVL -132 359 115 300 53 0 0 chr4 127158364 127158402 -75169945 + (TGGA)n Simple_repeat Simple_repeat 4 41 0 484 231 21 75 chr4 127158676 127158766 -75169581 + MER96B DNA MER1_type? 242 318 -99 2147 131 17 0 chr4 127158766 127159063 -75169284 + AluSx SINE Alu 1 302 -10 484 231 21 75 chr4 127159063 127159158 -75169189 + MER96B DNA MER1_type? 318 417 0 261 220 68 0 chr4 127159805 127159864 -75168483 - MER91C DNA MER1_type -42 98 36 210 351 119 13 chr4 127160391 127160542 -75167805 + L2 LINE L2 2553 2719 -595 29 28 0 0 chr4 127162352 127162388 -75165959 + AT_rich Low_complexity Low_complexity 1 36 0 322 339 28 0 chr4 127163065 127163174 -75165173 + MIR SINE MIR 22 133 -75 272 345 144 21 chr4 127163909 127164242 -75164105 - L2 LINE L2 -646 2668 2295 259 260 203 16 chr4 127164426 127164549 -75163798 + MIR SINE MIR 51 196 -66 435 238 377 4 chr4 127164791 127165056 -75163291 + L2 LINE L2 2933 3296 -17 181 176 29 0 chr4 127165028 127165062 -75163285 + MIR SINE MIR 223 257 -5 * 186 294 0 0 chr4 127165690 127165741 -75162606 - L3b LINE CR1 -3 1580 1530 929 188 139 40 chr4 127165885 127165979 -75162368 - AluJo SINE Alu -67 245 162 2256 93 21 0 chr4 127165979 127166268 -75162079 - AluSq SINE Alu -18 295 1 929 188 139 40 chr4 127166268 127166396 -75161951 - AluJo SINE Alu -150 162 1 2294 92 3 0 chr4 127167578 127167873 -75160474 - AluSp SINE Alu -17 296 1 21 36 0 0 chr4 127168056 127168084 -75160263 + AT_rich Low_complexity Low_complexity 1 28 0 3011 56 3 13 chr4 127168442 127168832 -75159515 + L1PA6 LINE L1 5754 6139 -15 237 241 98 98 chr4 127170763 127170896 -75157451 - MIR SINE MIR -79 183 51 688 251 152 16 chr4 127171809 127172183 -75156164 + L1ME3 LINE L1 5648 6072 -90 216 0 0 0 chr4 127172387 127172411 -75155936 + (A)n Simple_repeat Simple_repeat 1 24 0 1069 196 95 3 chr4 127172699 127172984 -75155363 - MER33 DNA MER1_type 0 324 14 462 190 60 20 chr4 127173022 127173122 -75155225 + MER5A DNA MER1_type 4 107 -82 803 216 79 0 chr4 127173313 127173503 -75154844 + MER3 DNA MER1_type 4 208 -1 557 126 0 0 chr4 127174946 127175033 -75153314 - AluJo/FRAM SINE Alu -16 296 210 1085 104 26 7 chr4 127175033 127175187 -75153160 + AluSc SINE Alu 136 292 -17 1167 180 54 101 chr4 127175228 127175544 -75152803 + AluJb SINE Alu 2 302 0 374 148 111 25 chr4 127175655 127175736 -75152611 + AluJ/FLAM SINE Alu 2 89 -213 1108 149 5 65 chr4 127175736 127175951 -75152396 - AluJb SINE Alu -110 202 1 526 161 0 0 chr4 127176010 127176091 -75152256 - AluSg/x SINE Alu -23 289 209 2171 75 3 20 chr4 127176171 127176466 -75151881 - AluSg SINE Alu -20 290 1 951 245 29 12 chr4 127177371 127177616 -75150731 - MIR SINE MIR -3 259 11 24 0 0 0 chr4 127178329 127178353 -75149994 + AT_rich Low_complexity Low_complexity 1 24 0 2236 88 3 10 chr4 127179240 127179535 -75148812 - AluSg SINE Alu -17 293 1 213 121 0 0 chr4 127180202 127180235 -75148112 + (T)n Simple_repeat Simple_repeat 1 33 0 245 245 0 0 chr4 127181160 127181213 -75147134 - MIR SINE MIR -105 157 105 1182 132 99 5 chr4 127182493 127182706 -75145641 + MER46A DNA MER2_type 3 235 -1 512 304 196 0 chr4 127183705 127183919 -75144428 - MIR SINE MIR 0 262 7 21 0 0 0 chr4 127183988 127184009 -75144338 + AT_rich Low_complexity Low_complexity 1 21 0 181 339 34 0 chr4 127186498 127186557 -75141790 - MIR SINE MIR -170 92 32 311 294 175 12 chr4 127186764 127186924 -75141423 - MIR SINE MIR -76 186 1 276 200 0 118 chr4 127186924 127187006 -75141341 + MIR SINE MIR 119 190 -72 330 274 174 22 chr4 127187711 127187941 -75140406 + L2 LINE L2 2710 2974 -340 421 304 94 23 chr4 127188722 127188893 -75139454 - MIR SINE MIR -39 223 41 24 0 0 0 chr4 127190880 127190904 -75137443 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 127190991 127191012 -75137335 + AT_rich Low_complexity Low_complexity 1 21 0 376 269 138 0 chr4 127191196 127191326 -75137021 + MIR3 SINE MIR 51 198 -10 201 295 95 11 chr4 127191825 127191920 -75136427 + L2 LINE L2 2919 3021 -292 1214 135 22 0 chr4 127192500 127192685 -75135662 + MER5A DNA MER1_type 1 189 0 283 275 62 0 chr4 127193253 127193333 -75135014 + L2 LINE L2 3229 3313 0 2188 129 7 0 chr4 127193891 127194193 -75134154 - AluSx SINE Alu -8 304 1 457 270 132 26 chr4 127194394 127194546 -75133801 - MIR SINE MIR -90 172 5 195 114 0 0 chr4 127194787 127194822 -75133525 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 25 31 0 0 chr4 127195792 127195824 -75132523 + AT_rich Low_complexity Low_complexity 1 32 0 1675 135 60 98 chr4 127196844 127197192 -75131155 + MER1B DNA MER1_type 3 337 0 1012 167 104 5 chr4 127197670 127198052 -75130295 - LTR22 LTR ERVK 0 509 1 22 56 0 0 chr4 127198438 127198474 -75129873 + AT_rich Low_complexity Low_complexity 1 36 0 418 278 78 57 chr4 127199392 127199622 -75128725 + MIR SINE MIR 28 262 0 234 313 92 32 chr4 127199997 127200400 -75127947 + L2 LINE L2 1932 2358 -956 208 266 78 0 chr4 127200575 127200639 -75127708 + L2 LINE L2 2408 2476 -838 235 368 105 0 chr4 127200640 127200849 -75127498 + MIR SINE MIR 8 238 -24 228 305 73 24 chr4 127202167 127202331 -75126016 - MIR3 SINE MIR -11 197 26 819 213 29 46 chr4 127202407 127202647 -75125700 + MER46A DNA MER2_type 1 236 0 23 33 0 0 chr4 127202880 127202910 -75125437 + AT_rich Low_complexity Low_complexity 1 30 0 193 185 138 0 chr4 127203228 127203293 -75125054 + MIR SINE MIR 145 218 -44 509 176 29 129 chr4 127203600 127203810 -75124537 + L1MC5 LINE L1 7729 7917 -44 196 175 32 0 chr4 127203906 127203969 -75124378 + (TA)n Simple_repeat Simple_repeat 2 66 0 219 299 13 0 chr4 127203987 127204064 -75124283 + (TATATG)n Simple_repeat Simple_repeat 6 83 0 434 304 6 31 chr4 127204418 127204576 -75123771 + MER5A DNA MER1_type 1 160 -27 254 322 0 58 chr4 127204850 127204971 -75123376 + MIR SINE MIR 78 191 -71 357 24 0 0 chr4 127205646 127205688 -75122659 + (CA)n Simple_repeat Simple_repeat 2 43 0 650 314 47 24 chr4 127206034 127206289 -75122058 - MIR SINE MIR -1 261 1 303 346 134 25 chr4 127206319 127206640 -75121707 + L2 LINE L2 2916 3271 -1 186 43 0 0 chr4 127207621 127207644 -75120703 + (CAA)n Simple_repeat Simple_repeat 2 24 0 453 215 46 8 chr4 127208832 127208962 -75119385 + MER104 DNA Tc2 29 163 -17 309 298 125 75 chr4 127209009 127209698 -75118649 - L1M4 LINE L1 -1298 4848 4126 24 0 0 0 chr4 127209710 127209734 -75118613 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 127210324 127210349 -75117998 + AT_rich Low_complexity Low_complexity 1 25 0 519 319 112 55 chr4 127210721 127211262 -75117085 - L1M4 LINE L1 -3059 3087 2489 2572 46 0 0 chr4 127211262 127211566 -75116781 - AluY SINE Alu -7 304 1 519 319 112 55 chr4 127211566 127211785 -75116562 - L1M4 LINE L1 -3657 2489 2284 195 276 35 0 chr4 127213598 127213656 -75114691 - L3 LINE CR1 0 1577 1518 441 202 164 0 chr4 127215303 127215407 -75112940 + L2 LINE L2 3193 3313 0 27 49 0 0 chr4 127216093 127216134 -75112213 + AT_rich Low_complexity Low_complexity 1 41 0 1061 155 98 16 chr4 127217985 127218178 -75110169 - MER2 DNA MER2_type -134 211 3 233 243 0 14 chr4 127218821 127218891 -75109456 + (TTA)n Simple_repeat Simple_repeat 2 70 0 1402 232 77 49 chr4 127219334 127219826 -75108521 + MLT1J LTR MaLR 5 510 -1 183 129 0 0 chr4 127219989 127220020 -75108327 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1120 298 44 13 chr4 127220193 127220643 -75107704 + LTR16B LTR ERVL 1 464 0 536 223 217 6 chr4 127220823 127220980 -75107367 - MIR SINE MIR 0 262 73 25 0 0 0 chr4 127221863 127221888 -75106459 + AT_rich Low_complexity Low_complexity 1 25 0 1959 14 0 5 chr4 127221931 127222152 -75106195 + AluYa5 SINE Alu 82 301 -10 26 0 0 0 chr4 127222832 127222858 -75105489 + AT_rich Low_complexity Low_complexity 1 26 0 1768 169 0 29 chr4 127224058 127224365 -75103982 + AluSx SINE Alu 6 303 -9 564 278 176 5 chr4 127226357 127226573 -75101774 + MIR SINE MIR 1 253 -9 307 317 10 30 chr4 127226731 127226832 -75101515 - L2 LINE L2 -232 3040 2942 282 272 41 59 chr4 127227086 127227255 -75101092 + HAL1 LINE L1 1212 1377 -1130 27 62 0 0 chr4 127227319 127227367 -75100980 + AT_rich Low_complexity Low_complexity 1 48 0 801 221 183 25 chr4 127227429 127227746 -75100601 + HAL1 LINE L1 1515 1881 -626 252 99 50 79 chr4 127229133 127229234 -75099113 + (TTAA)n Simple_repeat Simple_repeat 2 99 0 195 191 71 0 chr4 127231672 127231714 -75096633 - L2 LINE L2 0 3313 3269 1526 151 21 42 chr4 127232247 127232532 -75095815 - AluJo SINE Alu -10 302 24 458 191 5 10 chr4 127232532 127232733 -75095614 + L1MA4A LINE L1 6042 6302 -1 345 194 0 0 chr4 127232853 127232920 -75095427 - MER2 DNA MER2_type -139 206 140 755 170 0 50 chr4 127233051 127233192 -75095155 - MER2 DNA MER2_type -190 155 22 365 164 147 78 chr4 127233897 127234013 -75094334 - L2 LINE L2 0 3313 3190 213 322 0 0 chr4 127234051 127234110 -75094237 - MIR SINE MIR -59 149 91 2052 201 57 22 chr4 127234165 127234653 -75093694 + MLT1D LTR MaLR 1 505 0 196 326 67 82 chr4 127234785 127234920 -75093427 + L2 LINE L2 2656 2788 -526 24 0 0 0 chr4 127235515 127235539 -75092808 + AT_rich Low_complexity Low_complexity 1 24 0 569 204 70 35 chr4 127235609 127235751 -75092596 - MER5A DNA MER1_type -42 147 1 22 56 0 0 chr4 127235790 127235826 -75092521 + AT_rich Low_complexity Low_complexity 1 36 0 287 303 90 0 chr4 127236020 127236142 -75092205 - L1MC/D LINE L1 -1964 5844 5712 683 292 8 35 chr4 127236203 127236466 -75091881 - L1MC/D LINE L1 -590 5574 5319 282 289 178 7 chr4 127236892 127237027 -75091320 - MIR SINE MIR -24 238 81 2313 80 3 3 chr4 127237123 127237424 -75090923 - AluSg SINE Alu -9 301 1 323 182 35 13 chr4 127237753 127237892 -75090455 + L1ME2 LINE L1 5931 6123 -41 * 33850 35 1 0 chr4 127237884 127242795 -75085552 + L1PA4 LINE L1 1242 6154 -1 188 312 101 26 chr4 127243512 127243701 -75084646 - MIR SINE MIR -40 222 20 13339 121 27 1 chr4 127244651 127246677 -75081670 - Tigger1 DNA MER2_type -3 2415 339 1607 270 37 30 chr4 127246678 127247218 -75081129 - L2 LINE L2 -1447 1867 1324 225 241 25 25 chr4 127247636 127247715 -75080632 + L2 LINE L2 2783 2861 -453 2298 80 7 7 chr4 127247932 127248232 -75080115 + AluSq SINE Alu 1 300 -13 1134 216 73 25 chr4 127248589 127249084 -75079263 + MLT1F1 LTR MaLR 3 541 -1 23 54 0 0 chr4 127249652 127249689 -75078658 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr4 127254326 127254349 -75073998 + GC_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chr4 127265548 127265592 -75062755 + GC_rich Low_complexity Low_complexity 1 44 0 924 112 0 0 chr4 127268906 127269031 -75059316 - AluSg/x SINE Alu -54 258 134 2656 41 3 6 chr4 127269031 127269345 -75059002 - AluYb8 SINE Alu -5 313 1 2109 112 6 22 chr4 127269825 127270137 -75058210 - AluSx SINE Alu -5 307 1 659 273 37 14 chr4 127271728 127271944 -75056403 + MIR SINE MIR 31 251 -11 672 284 0 20 chr4 127272934 127273131 -75055216 - MIR SINE MIR -22 240 48 2239 70 20 13 chr4 127273530 127273831 -75054516 + AluSc SINE Alu 1 303 -6 2415 79 0 16 chr4 127273831 127274146 -75054201 + AluY SINE Alu 1 311 0 1281 136 77 9 chr4 127274181 127274402 -75053945 - MER46A DNA MER2_type 0 236 1 3711 181 7 22 chr4 127274702 127275393 -75052954 + L1ME1 LINE L1 5457 6138 -28 1955 128 52 33 chr4 127275393 127275761 -75052586 - THE1C LTR MaLR 0 375 1 3711 181 7 22 chr4 127275761 127275783 -75052564 + L1ME1 LINE L1 6138 6159 -7 28 0 0 0 chr4 127275791 127275819 -75052528 + AT_rich Low_complexity Low_complexity 1 28 0 456 157 22 0 chr4 127276144 127276233 -75052114 + MER53 DNA DNA 39 129 -60 463 212 192 0 chr4 127276472 127276623 -75051724 + MER5A DNA MER1_type 10 189 0 632 168 88 0 chr4 127276926 127277051 -75051296 - MER5B DNA MER1_type 0 178 43 2816 181 13 6 chr4 127277051 127277521 -75050826 + MLT2B2 LTR ERVL 43 515 0 183 304 0 18 chr4 127277521 127277577 -75050770 - MER5B DNA MER1_type -117 61 7 514 272 122 54 chr4 127279190 127279469 -75048878 - MARNA DNA Mariner -50 536 239 24 0 0 0 chr4 127279544 127279568 -75048779 + AT_rich Low_complexity Low_complexity 1 24 0 906 265 115 39 chr4 127280790 127281370 -75046977 + L1MEc LINE L1 657 1191 -5205 348 24 0 0 chr4 127281370 127281411 -75046936 + (CA)n Simple_repeat Simple_repeat 2 42 0 906 265 115 39 chr4 127281411 127281804 -75046543 + L1MEc LINE L1 1191 1750 -4646 1889 229 140 19 chr4 127281826 127282456 -75045891 + L1MC4 LINE L1 6459 7164 -878 842 191 91 5 chr4 127282455 127282664 -75045683 + L1MC4a LINE L1 7133 7359 -449 * 2192 247 25 75 chr4 127282666 127283422 -75044925 + MER21B LTR ERV1 1 718 -145 1764 190 83 83 chr4 127283482 127284082 -75044265 + L1MC4 LINE L1 7443 8042 0 236 207 27 29 chr4 127284897 127285028 -75043319 + AluSg/x SINE Alu 135 285 -17 345 24 0 0 chr4 127285028 127285070 -75043277 + (CATA)n Simple_repeat Simple_repeat 2 43 0 238 385 55 33 chr4 127286380 127286479 -75041868 + L2 LINE L2 2422 2517 -797 530 42 127 0 chr4 127286479 127286550 -75041797 - MADE1 DNA Mariner 0 80 1 238 385 55 33 chr4 127286550 127286780 -75041567 + L2 LINE L2 2517 2758 -556 2308 105 7 0 chr4 127287021 127287317 -75041030 + AluSq SINE Alu 1 298 -15 265 206 95 0 chr4 127287436 127287499 -75040848 - L2 LINE L2 -5 3267 3199 1731 165 10 27 chr4 127289117 127289414 -75038933 + AluJo SINE Alu 1 292 -20 455 254 21 14 chr4 127289994 127290136 -75038211 - MARNA DNA Mariner -34 552 410 443 266 29 100 chr4 127289995 127290375 -75037972 + MARNA DNA Mariner 40 392 -194 * 2306 62 10 7 chr4 127290540 127290831 -75037516 + AluY SINE Alu 1 292 -19 273 109 0 0 chr4 127292377 127292423 -75035924 + (CTG)n Simple_repeat Simple_repeat 3 48 0 21 0 0 0 chr4 127292609 127292630 -75035717 + GC_rich Low_complexity Low_complexity 1 21 0 1782 129 123 0 chr4 127294029 127294339 -75034008 - MER7A DNA MER2_type 0 346 1 1255 208 39 96 chr4 127294512 127294896 -75033451 + MLT1A2 LTR MaLR 13 374 0 1622 180 23 10 chr4 127295001 127295307 -75033040 + AluJb SINE Alu 1 310 -2 242 114 0 23 chr4 127295733 127295777 -75032570 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 341 197 14 0 chr4 127295777 127295848 -75032499 + MSTD LTR MaLR 325 396 0 241 123 18 18 chr4 127295848 127295905 -75032442 + (TA)n Simple_repeat Simple_repeat 1 57 0 253 326 53 0 chr4 127295944 127296039 -75032308 + L2 LINE L2 2736 2835 -479 3292 246 65 25 chr4 127296066 127296279 -75032068 + L1ME2 LINE L1 4124 4327 -1837 2103 155 10 54 chr4 127296279 127296685 -75031662 + MLT1B LTR MaLR 3 390 0 3292 246 65 25 chr4 127296685 127298423 -75029924 + L1ME2 LINE L1 4327 6163 -1 682 232 76 5 chr4 127298420 127298618 -75029729 + L1MC4a LINE L1 6361 6572 -1236 * 24 32 0 0 chr4 127298618 127298649 -75029698 + AT_rich Low_complexity Low_complexity 1 31 0 893 221 28 79 chr4 127298656 127298910 -75029437 + MLT1E LTR MaLR 237 477 -116 335 230 133 0 chr4 127298919 127299054 -75029293 - L1M4 LINE L1 -1587 4559 4407 1479 191 66 6 chr4 127299074 127299393 -75028954 + L1MC4 LINE L1 6730 7067 -975 246 62 0 0 chr4 127299393 127299425 -75028922 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 1797 186 115 48 chr4 127299440 127299902 -75028445 + L1MC4 LINE L1 7110 7602 -440 1425 219 74 76 chr4 127299903 127300310 -75028037 - MLT1E LTR MaLR 0 593 188 1788 138 88 0 chr4 127300321 127300415 -75027932 - MER7A DNA MER2_type -2716 322 238 3787 116 19 2 chr4 127300415 127300933 -75027414 - MER1A DNA MER1_type 0 527 1 1788 138 88 0 chr4 127300933 127301135 -75027212 - MER7A DNA MER2_type -2800 238 2 496 221 152 14 chr4 127301156 127301301 -75027046 - MLT1E LTR MaLR -422 171 7 190 209 23 0 chr4 127301322 127301365 -75026982 + L2 LINE L2 3218 3261 -11 2215 133 123 5 chr4 127301636 127302019 -75026328 - MSTA LTR MaLR 0 428 1 562 299 66 21 chr4 127302225 127302466 -75025881 + L3b LINE CR1 1262 1513 -70 28 71 0 0 chr4 127303131 127303187 -75025160 + AT_rich Low_complexity Low_complexity 1 56 0 502 224 99 103 chr4 127303763 127304035 -75024312 - MARNA DNA Mariner -106 480 210 435 319 47 0 chr4 127304060 127304229 -75024118 + MIR SINE MIR 70 246 -16 232 331 68 68 chr4 127304506 127304551 -75023796 + L2 LINE L2 2671 2715 -599 1424 168 46 43 chr4 127304551 127304855 -75023492 + AluJo SINE Alu 1 305 -7 232 331 68 68 chr4 127304855 127304972 -75023375 + L2 LINE L2 2714 2833 -481 495 274 111 71 chr4 127305145 127305342 -75023005 + L2 LINE L2 2949 3168 -145 1302 200 139 27 chr4 127305342 127305788 -75022559 + LTR54B LTR ERV1 1 496 -2 495 274 111 71 chr4 127305788 127305941 -75022406 + L2 LINE L2 3168 3313 0 477 216 59 0 chr4 127306681 127306783 -75021564 + MER69 DNA AcHobo 1 108 -1118 588 266 75 5 chr4 127306817 127307005 -75021342 + MER69 DNA AcHobo 184 384 -2142 355 175 320 10 chr4 127307005 127307108 -75021239 + MER39 LTR ERV1 1 135 -572 2084 200 35 127 chr4 127307175 127307924 -75020423 + LTR8A LTR ERV1 40 719 -8 1754 193 41 14 chr4 127307935 127308303 -75020044 + MER39 LTR ERV1 330 707 0 1003 211 126 29 chr4 127308346 127308708 -75019639 + MSTC LTR MaLR 1 428 0 344 272 0 0 chr4 127308714 127308795 -75019552 + MER69 DNA AcHobo 444 524 -702 405 0 0 0 chr4 127309034 127309079 -75019268 + (CA)n Simple_repeat Simple_repeat 2 46 0 1959 159 6 24 chr4 127309513 127309852 -75018495 + MER1B DNA MER1_type 1 333 -4 504 283 9 0 chr4 127309853 127309966 -75018381 + LTR33 LTR ERVL 64 177 -344 982 199 20 169 chr4 127309992 127310644 -75017703 + MLT1H1 LTR MaLR 1 555 0 623 212 59 12 chr4 127310735 127310905 -75017442 + LTR33 LTR ERVL 342 519 -2 1847 59 8 8 chr4 127311504 127311742 -75016605 + AluY SINE Alu 65 302 -9 430 223 231 37 chr4 127311744 127312013 -75016334 + L1MC4a LINE L1 5579 5899 -1909 1407 106 46 0 chr4 127312240 127312477 -75015870 + L1MA8 LINE L1 6044 6291 0 1183 276 166 36 chr4 127313060 127313944 -75014403 + L2 LINE L2 2255 3313 0 571 141 149 8 chr4 127314634 127314755 -75013592 + MLT1A2 LTR MaLR 1 138 -227 2240 156 32 64 chr4 127314755 127315190 -75013157 + MSTB LTR MaLR 1 421 -5 884 206 79 14 chr4 127315196 127315410 -75012937 + MLT1A2 LTR MaLR 147 374 0 394 179 30 4 chr4 127316850 127316985 -75011362 + MER53 DNA DNA 1 189 0 308 298 38 46 chr4 127317338 127317469 -75010878 + MIR SINE MIR 16 145 -63 185 319 88 11 chr4 127317548 127317639 -75010708 + MIR SINE MIR 31 128 -80 280 263 0 95 chr4 127317740 127317877 -75010470 + MIR SINE MIR 89 212 -50 198 103 0 0 chr4 127318174 127318203 -75010144 + (A)n Simple_repeat Simple_repeat 1 29 0 21 36 0 0 chr4 127319049 127319077 -75009270 + AT_rich Low_complexity Low_complexity 1 28 0 195 42 0 0 chr4 127319926 127319950 -75008397 + (CA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr4 127320094 127320118 -75008229 + AT_rich Low_complexity Low_complexity 1 24 0 348 303 64 9 chr4 127320619 127320728 -75007619 + MIR SINE MIR 2 116 -146 22 35 0 0 chr4 127320863 127320892 -75007455 + AT_rich Low_complexity Low_complexity 1 29 0 282 301 21 21 chr4 127321986 127322079 -75006268 - MIR SINE MIR -96 112 20 290 291 185 20 chr4 127322308 127322459 -75005888 - MIR SINE MIR -59 203 28 551 250 45 28 chr4 127322497 127322673 -75005674 + MER20B DNA MER1_type 1 179 -604 249 315 33 11 chr4 127323840 127323932 -75004415 + MLT1K LTR MaLR 147 240 -348 433 225 13 7 chr4 127324077 127324228 -75004119 + (TAGA)n Simple_repeat Simple_repeat 2 153 0 282 293 164 14 chr4 127324228 127324368 -75003979 + MLT1K LTR MaLR 412 572 -16 2367 74 0 13 chr4 127324445 127324755 -75003592 + AluY SINE Alu 1 306 -5 2368 83 30 0 chr4 127325148 127325450 -75002897 + AluY SINE Alu 1 311 0 2054 70 60 14 chr4 127327568 127327852 -75000495 - AluSg SINE Alu -13 297 1 243 0 0 0 chr4 127329472 127329499 -74998848 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 680 274 30 0 chr4 127329750 127329918 -74998429 - MIR SINE MIR -89 173 1 603 207 123 60 chr4 127330095 127330312 -74998035 - MLT1G LTR MaLR -9 645 341 924 293 166 20 chr4 127330445 127330896 -74997451 - LTR33 LTR ERVL -4 517 1 292 149 179 15 chr4 127331026 127331093 -74997254 - MER116 DNA Mariner -1 79 2 565 89 59 10 chr4 127331297 127331398 -74996949 + L1MA8 LINE L1 6183 6288 -3 1783 226 55 41 chr4 127331921 127332412 -74995935 + MLT1D LTR MaLR 1 498 -7 372 22 0 0 chr4 127333362 127333407 -74994940 + (CA)n Simple_repeat Simple_repeat 2 46 0 2279 117 0 0 chr4 127333556 127333865 -74994482 - AluSg SINE Alu -1 309 1 351 325 71 0 chr4 127333865 127334013 -74994334 - MIR SINE MIR -16 246 88 264 253 23 23 chr4 127335142 127335229 -74993118 + MLT1K LTR MaLR 502 588 0 882 196 180 20 chr4 127336149 127336404 -74991943 + AluSg SINE Alu 1 296 -4 22 70 0 0 chr4 127336571 127336614 -74991733 + AT_rich Low_complexity Low_complexity 1 43 0 317 275 189 18 chr4 127337844 127338066 -74990281 + L2 LINE L2 1438 1697 -1617 198 148 56 0 chr4 127338066 127338120 -74990227 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 1035 240 118 6 chr4 127338490 127338819 -74989528 + L2 LINE L2 1827 2192 -1122 189 184 102 0 chr4 127338994 127339043 -74989304 - L2 LINE L2 -2 3311 3258 349 289 144 12 chr4 127339075 127339248 -74989099 + L2 LINE L2 2149 2344 -970 221 412 0 0 chr4 127339912 127339980 -74988367 + L2 LINE L2 3117 3184 -88 3614 158 57 27 chr4 127340183 127340237 -74988110 - L1MB7 LINE L1 -19 6165 6114 1763 141 56 0 chr4 127340237 127340536 -74987811 + AluSx SINE Alu 1 314 0 3614 158 57 27 chr4 127340536 127341194 -74987153 - L1MB7 LINE L1 -70 6114 5430 207 209 0 0 chr4 127342225 127342268 -74986079 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1911 136 23 3 chr4 127342583 127342765 -74985582 - AluSg SINE Alu -2 308 116 189 0 0 0 chr4 127342765 127342786 -74985561 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1911 136 23 3 chr4 127342786 127342905 -74985442 - AluSg SINE Alu -194 116 1 253 218 90 39 chr4 127344028 127344106 -74984241 + MIR SINE MIR 77 158 -104 2715 113 34 7 chr4 127344873 127345290 -74983057 + MSTA LTR MaLR 1 428 0 253 268 0 62 chr4 127345296 127345393 -74982954 + MIR SINE MIR 172 262 0 543 176 248 39 chr4 127346159 127346312 -74982035 - MER5A DNA MER1_type 0 189 5 191 311 135 40 chr4 127346436 127346584 -74981763 - L3 LINE CR1 -1193 384 223 279 291 97 77 chr4 127346748 127346990 -74981357 - MIR SINE MIR -16 246 5 506 294 47 11 chr4 127347257 127347532 -74980815 + L1ME3A LINE L1 4971 5255 -891 996 191 16 0 chr4 127347563 127347751 -74980596 + AluJo SINE Alu 119 309 -3 2737 246 40 33 chr4 127347756 127348629 -74979718 + L1ME3A LINE L1 5284 6162 -8 402 338 60 43 chr4 127349253 127349487 -74978860 + MIR SINE MIR 13 250 -12 196 276 184 0 chr4 127349967 127350054 -74978293 - MIR3 SINE MIR -17 191 89 2094 132 7 3 chr4 127351535 127351845 -74976502 + AluSq SINE Alu 3 313 0 273 169 0 104 chr4 127352282 127352359 -74975988 - MER5B DNA MER1_type 0 178 110 737 247 76 27 chr4 127352489 127352712 -74975635 + MIR SINE MIR 2 235 -27 21 82 0 0 chr4 127353367 127353416 -74974931 + AT_rich Low_complexity Low_complexity 1 49 0 3229 226 68 18 chr4 127354600 127355576 -74972771 - L1M4 LINE L1 -1326 4820 3797 682 273 20 86 chr4 127355956 127356374 -74971973 - L2 LINE L2 0 3313 2842 343 242 0 0 chr4 127356374 127356440 -74971907 + L2 LINE L2 2596 2661 -653 * 348 298 93 7 chr4 127356427 127356454 -74971893 - L2 LINE L2 -622 2692 2669 372 43 0 0 chr4 127356454 127356500 -74971847 + (TG)n Simple_repeat Simple_repeat 2 47 0 348 298 93 7 chr4 127356500 127356623 -74971724 - L2 LINE L2 -645 2669 2529 34 0 0 0 chr4 127356627 127356661 -74971686 + AT_rich Low_complexity Low_complexity 1 34 0 238 188 42 0 chr4 127356661 127356709 -74971638 - Alu SINE Alu -16 117 68 765 244 23 9 chr4 127356709 127356926 -74971421 - L2 LINE L2 -780 2534 2315 2333 59 16 7 chr4 127357130 127357435 -74970912 - AluY SINE Alu -3 308 1 945 260 105 39 chr4 127357832 127358193 -74970154 + MLT1J1 LTR MaLR 62 446 0 653 318 30 13 chr4 127359043 127359276 -74969071 - MIR SINE MIR 0 262 26 2376 90 3 0 chr4 127359382 127359681 -74968666 + AluSp SINE Alu 1 300 -13 25 51 0 0 chr4 127359851 127359890 -74968457 + AT_rich Low_complexity Low_complexity 1 39 0 26 50 0 0 chr4 127360370 127360410 -74967937 + AT_rich Low_complexity Low_complexity 1 40 0 467 194 0 56 chr4 127360650 127360758 -74967589 - MER3 DNA MER1_type 0 209 108 24 53 0 0 chr4 127362122 127362160 -74966187 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr4 127362773 127362794 -74965553 + AT_rich Low_complexity Low_complexity 1 21 0 836 336 48 55 chr4 127362978 127363074 -74965273 - L2 LINE L2 -49 3223 3128 1918 97 4 0 chr4 127363074 127363321 -74965026 + AluSg SINE Alu 39 286 -24 836 336 48 55 chr4 127363321 127363880 -74964467 - L2 LINE L2 -144 3128 2574 1467 220 33 17 chr4 127363881 127364240 -74964107 + Charlie1a DNA MER1_type 6 370 -1085 833 213 76 10 chr4 127364541 127364738 -74963609 - MER63A DNA MER1_type 0 210 1 202 233 0 0 chr4 127364879 127364922 -74963425 + L2 LINE L2 3263 3305 -8 2107 111 3 10 chr4 127367878 127368175 -74960172 - AluSx SINE Alu -17 295 1 180 97 0 0 chr4 127368442 127368473 -74959874 + (CAG)n Simple_repeat Simple_repeat 3 33 0 2533 32 6 6 chr4 127369799 127370110 -74958237 + AluYb8 SINE Alu 1 311 -7 940 159 55 0 chr4 127370119 127370264 -74958083 + AluJo SINE Alu 85 237 -75 279 157 0 0 chr4 127370270 127370321 -74958026 + A-rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr4 127370795 127370817 -74957530 + AT_rich Low_complexity Low_complexity 1 22 0 2143 119 3 3 chr4 127371343 127371653 -74956694 - AluSq SINE Alu -3 310 1 30 45 0 0 chr4 127371996 127372040 -74956307 + AT_rich Low_complexity Low_complexity 1 44 0 222 37 0 0 chr4 127373296 127373323 -74955024 + (CAATT)n Simple_repeat Simple_repeat 4 30 0 443 333 76 40 chr4 127374024 127374421 -74953926 - L2 LINE L2 -544 2770 2360 723 282 138 19 chr4 127374682 127375001 -74953346 + LTR18A LTR ERVL 1 357 0 334 287 6 39 chr4 127375777 127375941 -74952406 - MER5B DNA MER1_type -18 171 1 21 0 0 0 chr4 127377189 127377210 -74951137 + AT_rich Low_complexity Low_complexity 1 21 0 312 51 0 0 chr4 127377532 127377571 -74950776 + U2 snRNA snRNA 1 39 -149 22 0 0 0 chr4 127378535 127378557 -74949790 + AT_rich Low_complexity Low_complexity 1 22 0 2212 115 7 0 chr4 127378568 127378864 -74949483 + AluSp SINE Alu 1 298 -15 790 196 30 104 chr4 127378935 127379165 -74949182 + AluJb SINE Alu 86 298 -14 603 291 55 0 chr4 127380009 127380174 -74948173 + MIR SINE MIR 89 262 0 296 272 0 25 chr4 127380501 127380582 -74947765 - MIR SINE MIR -11 251 173 733 253 104 10 chr4 127380592 127380900 -74947447 + MER46C DNA MER2_type 1 337 -1 556 260 112 25 chr4 127380911 127381107 -74947240 - MIR SINE MIR -10 252 40 194 328 31 0 chr4 127381163 127381227 -74947120 - MIR SINE MIR -109 153 88 689 190 95 0 chr4 127381234 127381371 -74946976 + MIR SINE MIR 81 230 -32 6910 48 28 0 chr4 127382723 127383775 -74944572 - L1PA7 LINE L1 0 6154 5070 1038 313 25 35 chr4 127383828 127384609 -74943738 + L1ME LINE L1 49 909 -5487 205 191 29 59 chr4 127384617 127384685 -74943662 + T-rich Low_complexity Low_complexity 2 67 0 523 100 0 72 chr4 127384722 127384902 -74943445 + (TA)n Simple_repeat Simple_repeat 2 168 0 985 306 51 25 chr4 127384902 127385553 -74942794 + L1ME LINE L1 973 1640 -4756 2579 208 32 35 chr4 127385556 127386571 -74941776 + L1ME LINE L1 4694 5697 -538 * 4641 253 61 29 chr4 127386570 127388720 -74939627 + L1MEc LINE L1 1868 4048 -2167 363 215 0 0 chr4 127388732 127388797 -74939550 + FRAM/FAM SINE Alu 1 64 -102 3858 238 1 5 chr4 127388797 127389760 -74938587 + L1 LINE L1 2581 3539 -2607 701 264 0 0 chr4 127389758 127389921 -74938426 + L1MD2 LINE L1 5963 6125 -234 * 3034 177 22 15 chr4 127389921 127390022 -74938325 - MER44D DNA MER2_type -1882 605 506 2349 145 3 6 chr4 127390022 127390387 -74937960 + THE1B LTR MaLR 1 364 0 3034 177 22 15 chr4 127390387 127390827 -74937520 - MER44D DNA MER2_type -1981 506 5 1042 148 29 19 chr4 127390831 127391040 -74937307 + L1MD2 LINE L1 6125 6335 -24 207 366 104 16 chr4 127391064 127391247 -74937100 + L2 LINE L2 2745 2943 -371 539 274 11 29 chr4 127391260 127391435 -74936912 - MER69A DNA AcHobo -4 173 2 362 330 0 0 chr4 127391580 127391680 -74936667 + L2 LINE L2 3134 3233 -39 2548 107 25 0 chr4 127394798 127395152 -74933195 + THE1B LTR MaLR 1 363 -1 10186 105 48 20 chr4 127395153 127396243 -74932104 + THE1B-int LTR MaLR 1 1147 -433 2211 112 7 0 chr4 127396243 127396547 -74931800 + AluSg SINE Alu 1 306 -4 10186 105 48 20 chr4 127396547 127396994 -74931353 + THE1B-int LTR MaLR 1147 1580 0 2738 96 3 0 chr4 127396994 127397357 -74930990 + THE1B LTR MaLR 1 364 0 412 214 9 54 chr4 127397375 127397487 -74930860 - L1ME3A LINE L1 -5 6165 6059 497 228 101 13 chr4 127397503 127397652 -74930695 + Charlie8 DNA MER1_type 108 269 -2148 401 232 203 58 chr4 127398168 127398409 -74929938 + MLT1L LTR MaLR 15 290 -325 18129 177 54 21 chr4 127398439 127398790 -74929557 + L1PBa LINE L1 3 341 -6521 2030 125 16 10 chr4 127398790 127399101 -74929246 + AluSp SINE Alu 1 313 0 18129 177 54 21 chr4 127399101 127404586 -74923761 + L1PBa LINE L1 341 6006 -856 13419 177 38 15 chr4 127404692 127405962 -74922385 + L1PB1 LINE L1 1746 2985 -3166 2800 16 0 0 chr4 127405962 127406273 -74922074 + AluYa5 SINE Alu 1 311 0 13419 177 38 15 chr4 127406273 127409312 -74919035 + L1PB1 LINE L1 2985 6150 -1 364 287 75 46 chr4 127409402 127409576 -74918771 + MLT1L LTR MaLR 437 615 0 1758 187 3 0 chr4 127409628 127409917 -74918430 + AluJb SINE Alu 1 290 -22 29 0 0 0 chr4 127409917 127409946 -74918401 + AT_rich Low_complexity Low_complexity 1 29 0 1287 196 54 0 chr4 127410089 127410365 -74917982 + MER58B DNA MER1_type 51 341 0 586 223 159 6 chr4 127410373 127410530 -74917817 - MER5A DNA MER1_type 0 189 9 327 244 33 44 chr4 127410548 127410638 -74917709 - MER58B DNA MER1_type -3 338 250 399 85 0 0 chr4 127410654 127410713 -74917634 + Alu SINE Alu 240 298 -4 422 236 28 44 chr4 127410959 127411141 -74917206 + (TA)n Simple_repeat Simple_repeat 1 179 0 2380 190 78 34 chr4 127411690 127412305 -74916042 - LTR48B LTR ERV1 0 644 3 1580 186 6 28 chr4 127412544 127412862 -74915485 + AluJo SINE Alu 1 311 -1 1482 205 30 21 chr4 127412984 127413316 -74915031 + MER58B DNA MER1_type 7 341 0 540 213 168 7 chr4 127413334 127413489 -74914858 - MER5A DNA MER1_type -1 188 9 917 215 53 19 chr4 127413505 127413714 -74914633 - MER58A DNA MER1_type -1 223 8 2277 178 37 9 chr4 127414974 127415428 -74912919 - MLT1C LTR MaLR 0 467 1 385 291 146 13 chr4 127415791 127415949 -74912398 - MIR SINE MIR -71 191 13 181 381 54 36 chr4 127416122 127416290 -74912057 - L2 LINE L2 -614 2700 2530 2044 205 84 87 chr4 127416339 127417032 -74911315 - LTR8 LTR ERV1 0 691 1 3039 165 47 5 chr4 127418098 127418669 -74909678 - LTR49 LTR ERV1 0 595 1 3819 151 94 1 chr4 127419202 127419853 -74908494 + MER50 LTR ERV1 1 711 -23 3643 144 61 11 chr4 127420193 127420832 -74907515 + LTR51 LTR ERV1 1 671 0 2035 203 100 44 chr4 127421310 127421889 -74906458 - LTR48B LTR ERV1 0 644 28 2138 99 41 0 chr4 127421889 127422183 -74906164 - AluSx SINE Alu -4 308 3 2035 203 100 44 chr4 127422183 127422213 -74906134 - LTR48B LTR ERV1 -616 28 1 374 337 29 29 chr4 127424169 127424374 -74903973 + MER63A DNA MER1_type 1 205 -5 28 0 0 0 chr4 127425597 127425625 -74902722 + AT_rich Low_complexity Low_complexity 1 28 0 1265 68 0 0 chr4 127425803 127425965 -74902382 + L1PA8 LINE L1 6006 6167 -5 1165 199 123 15 chr4 127428004 127428265 -74900082 - AluJo SINE Alu -12 290 2 2462 73 0 0 chr4 127428406 127428709 -74899638 + AluY SINE Alu 1 303 -8 272 68 0 23 chr4 127428766 127428810 -74899537 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 260 217 228 11 chr4 127428963 127429055 -74899292 - Charlie3 DNA MER1_type -4 2706 2595 197 128 21 0 chr4 127429118 127429165 -74899182 + (CAA)n Simple_repeat Simple_repeat 2 49 0 226 258 17 17 chr4 127429167 127429287 -74899060 + A-rich Low_complexity Low_complexity 3 122 0 698 294 16 32 chr4 127430809 127431057 -74897290 + MIR SINE MIR 5 248 -14 270 116 0 0 chr4 127431184 127431227 -74897120 + (TC)n Simple_repeat Simple_repeat 1 43 0 398 209 104 43 chr4 127431737 127431852 -74896495 - L2 LINE L2 -3 3310 3189 331 330 84 21 chr4 127432441 127432632 -74895715 + MIR SINE MIR 22 224 -38 24 32 0 0 chr4 127433445 127433476 -74894871 + AT_rich Low_complexity Low_complexity 1 31 0 2122 171 13 5 chr4 127433563 127433948 -74894399 + MLT1B LTR MaLR 3 390 0 232 306 14 28 chr4 127435238 127435310 -74893037 + L2 LINE L2 3239 3309 -4 336 264 40 16 chr4 127435588 127435713 -74892634 - L1ME LINE L1 -462 5659 5532 221 208 0 38 chr4 127435856 127435909 -74892438 + CT-rich Low_complexity Low_complexity 4 54 0 231 194 181 14 chr4 127436531 127436603 -74891744 + LTR67 LTR ERVL 457 540 -17 2047 82 0 0 chr4 127436959 127437216 -74891131 - AluY SINE Alu -54 257 1 296 231 265 26 chr4 127437347 127437464 -74890883 + MIR SINE MIR 91 235 -27 413 267 53 111 chr4 127438447 127438672 -74889675 - MIR SINE MIR -50 212 1 572 245 147 13 chr4 127439655 127439969 -74888378 + L1M4 LINE L1 4840 5195 -951 1870 124 0 0 chr4 127439970 127440219 -74888128 + AluSx SINE Alu 1 249 -63 1557 260 23 5 chr4 127440241 127440626 -74887721 + MLT1E LTR MaLR 201 592 -1 23 68 0 0 chr4 127440641 127440685 -74887662 + AT_rich Low_complexity Low_complexity 1 44 0 302 206 14 0 chr4 127440823 127440896 -74887451 + CT-rich Low_complexity Low_complexity 4 77 0 257 294 37 64 chr4 127441124 127441233 -74887114 - L2 LINE L2 -199 3073 2968 248 260 120 0 chr4 127441313 127441413 -74886934 - L1ME4a LINE L1 -31 6090 5979 465 209 8 54 chr4 127441423 127441552 -74886795 - L1MA10 LINE L1 -1 6333 6211 501 352 45 6 chr4 127443148 127443327 -74885020 - MIR3 SINE MIR -7 201 16 2041 109 3 40 chr4 127443819 127444122 -74884225 + AluSq SINE Alu 1 292 -21 286 249 11 2 chr4 127444828 127444935 -74883412 - L1ME3A LINE L1 -244 5926 5821 352 264 52 52 chr4 127444935 127445128 -74883219 - L1ME4a LINE L1 -69 6052 5860 2622 52 0 0 chr4 127445292 127445601 -74882746 - AluY SINE Alu 0 311 3 2597 218 62 7 chr4 127446966 127447543 -74880804 - MLT1E2 LTR MaLR 0 626 18 2324 176 52 2 chr4 127447959 127448402 -74879945 + MLT1C LTR MaLR 1 465 -2 5575 149 19 10 chr4 127448527 127450263 -74878084 + L1PA13 LINE L1 4398 6143 -20 552 15 0 0 chr4 127451899 127451964 -74876383 + (TG)n Simple_repeat Simple_repeat 2 66 0 209 311 168 0 chr4 127452731 127452892 -74875455 - MIR SINE MIR -6 256 69 551 261 25 37 chr4 127453117 127453278 -74875069 + L2 LINE L2 3153 3311 -2 234 351 43 0 chr4 127453659 127453753 -74874594 - L2 LINE L2 -21 3251 3154 255 214 0 0 chr4 127454590 127454660 -74873687 + T-rich Low_complexity Low_complexity 1 70 0 4092 180 28 15 chr4 127455385 127455893 -74872454 + L1PA16 LINE L1 4925 5425 -741 198 0 0 0 chr4 127455893 127455915 -74872432 + (TAA)n Simple_repeat Simple_repeat 2 23 0 4092 180 28 15 chr4 127455915 127456579 -74871768 + L1PA16 LINE L1 5425 6159 -7 33 25 0 0 chr4 127456808 127456848 -74871499 + AT_rich Low_complexity Low_complexity 1 40 0 2103 157 36 3 chr4 127456898 127457230 -74871117 - MLT1A1 LTR MaLR -20 345 3 2754 202 32 8 chr4 127459395 127459571 -74868776 - L1M3 LINE L1 -375 5793 5623 1884 123 63 36 chr4 127459571 127459936 -74868411 + THE1C LTR MaLR 1 375 0 2754 202 32 8 chr4 127459936 127460756 -74867591 - L1M3 LINE L1 -545 5623 4772 2177 246 57 30 chr4 127460752 127461350 -74866997 - L1M1 LINE L1 -3891 2319 1835 * 17277 146 27 12 chr4 127461350 127463088 -74865259 + Tigger3(Golem) DNA MER2_type 1 1804 -1225 2180 110 0 7 chr4 127463088 127463388 -74864959 + AluSp SINE Alu 1 298 -15 17277 146 27 12 chr4 127463388 127464633 -74863714 + Tigger3(Golem) DNA MER2_type 1804 3029 0 2177 246 57 30 chr4 127464633 127465097 -74863250 - L1M1 LINE L1 -4375 1835 1385 1805 309 63 39 chr4 127465079 127465892 -74862455 - L1M1 LINE L1 -5254 887 5 * 4045 133 6 15 chr4 127466732 127467406 -74860941 + L1MA8 LINE L1 5620 6287 -4 32 0 0 0 chr4 127467406 127467438 -74860909 + AT_rich Low_complexity Low_complexity 1 32 0 2134 194 22 25 chr4 127468079 127468588 -74859759 + L1MA7 LINE L1 5785 6291 0 1335 329 80 44 chr4 127468618 127470239 -74858108 + ERVL LTR ERVL 2013 3746 -2018 313 354 28 87 chr4 127470601 127470855 -74857492 + HAL1 LINE L1 471 709 -1798 448 169 0 0 chr4 127470855 127470938 -74857409 - MER53 DNA DNA -104 85 3 290 297 21 21 chr4 127471073 127471218 -74857129 + HAL1 LINE L1 828 972 -1535 25 65 0 0 chr4 127471218 127471264 -74857083 + AT_rich Low_complexity Low_complexity 1 46 0 860 152 0 0 chr4 127471390 127471522 -74856825 + FLAM_C SINE Alu 1 132 -1 192 77 0 0 chr4 127471546 127471572 -74856775 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 447 319 53 14 chr4 127471595 127471880 -74856467 + HAL1 LINE L1 1063 1358 -1149 1428 300 68 6 chr4 127472285 127472798 -74855549 + L1MCb LINE L1 1 545 -5500 2956 211 16 23 chr4 127472799 127473372 -74854975 - MER21B LTR ERV1 -292 571 3 1219 178 66 13 chr4 127473383 127473700 -74854647 + L1M2 LINE L1 1691 2185 -4242 724 234 110 5 chr4 127473722 127473940 -74854407 + L1MCb LINE L1 2212 2452 -4112 1052 280 73 73 chr4 127473946 127474593 -74853754 + L1M3d LINE L1 1606 2252 -5234 5565 247 39 19 chr4 127474760 127477849 -74850498 + L1M3d LINE L1 2011 5114 -2451 883 117 7 7 chr4 127477851 127478005 -74850342 + (GAA)n Simple_repeat Simple_repeat 2 155 0 265 171 0 0 chr4 127478005 127478046 -74850301 + polypurine Low_complexity Low_complexity 1 41 0 7019 175 17 70 chr4 127478051 127478266 -74850081 + L1M3d LINE L1 5103 5328 -2237 1887 147 4 0 chr4 127478266 127478545 -74849802 + AluJb SINE Alu 5 284 -28 7019 175 17 70 chr4 127478545 127479574 -74848773 + L1M3d LINE L1 5328 6410 -1155 2215 124 0 0 chr4 127479574 127479872 -74848475 + AluSx SINE Alu 1 298 -14 7019 175 17 70 chr4 127479872 127480296 -74848051 + L1M3d LINE L1 6410 6685 -880 348 43 0 0 chr4 127480296 127480342 -74848005 + (TG)n Simple_repeat Simple_repeat 2 47 0 608 259 0 0 chr4 127480499 127480719 -74847628 + AluY SINE Alu 92 311 0 1437 286 75 22 chr4 127481279 127481775 -74846572 + MLT1H1 LTR MaLR 1 522 -33 899 270 71 34 chr4 127481778 127482201 -74846146 - MLT1G LTR MaLR 0 590 114 52 40 0 30 chr4 127482513 127482534 -74845813 + AT_rich Low_complexity Low_complexity 1 21 -75 1661 172 3 14 chr4 127482534 127482840 -74845507 - AluJb SINE Alu 0 303 1 52 40 0 30 chr4 127482840 127482915 -74845432 + AT_rich Low_complexity Low_complexity 21 96 0 381 303 229 11 chr4 127483291 127483479 -74844868 - MIR SINE MIR -14 248 20 3108 140 9 6 chr4 127484298 127484834 -74843513 + L1PA16 LINE L1 5628 6165 -1 2062 163 34 8 chr4 127485393 127485748 -74842599 - THE1B LTR MaLR 0 364 1 11135 91 44 0 chr4 127485748 127487262 -74841085 - THE1B-int LTR MaLR 0 1580 1 2113 147 36 28 chr4 127487262 127487623 -74840724 - THE1B LTR MaLR 0 364 1 266 267 139 0 chr4 127487653 127487739 -74840608 + MLT1F LTR MaLR 5 102 -440 * 331 175 0 0 chr4 127487734 127487797 -74840550 + MLT1F1 LTR MaLR 489 551 -16 321 212 64 112 chr4 127487828 127488078 -74840269 - HAL1b LINE L1 -507 841 604 404 293 91 30 chr4 127488373 127488571 -74839776 + MIR SINE MIR 20 229 -33 2472 277 63 50 chr4 127488571 127489375 -74838972 - L1ME LINE L1 -4865 1215 411 933 230 71 68 chr4 127489375 127489770 -74838577 + MSTD LTR MaLR 1 396 0 2472 277 63 50 chr4 127489770 127490182 -74838165 - L1ME LINE L1 -5669 411 6 437 194 29 10 chr4 127490243 127490346 -74838001 + MLT1A1 LTR MaLR 1 105 -260 2488 175 34 20 chr4 127490369 127491182 -74837165 + L1P4 LINE L1 4711 5536 -630 1077 205 29 5 chr4 127491197 127491402 -74836945 + MLT1A1 LTR MaLR 156 365 0 21 0 0 0 chr4 127491442 127491463 -74836884 + AT_rich Low_complexity Low_complexity 1 21 0 389 303 61 18 chr4 127491643 127491808 -74836539 + MIR SINE MIR 70 241 -21 237 350 106 38 chr4 127491930 127492090 -74836257 + L2 LINE L2 3094 3264 -8 2613 133 36 2 chr4 127494463 127494907 -74833440 + L1PA16 LINE L1 5708 6166 0 1655 178 24 3 chr4 127494990 127495282 -74833065 + AluJo SINE Alu 1 298 -14 231 318 228 9 chr4 127496334 127496545 -74831802 - L2 LINE L2 -1056 2258 2002 2431 111 0 34 chr4 127496634 127497022 -74831325 + THE1C LTR MaLR 1 375 0 227 260 106 10 chr4 127497355 127497459 -74830888 + L1MEc LINE L1 1049 1162 -5234 28 61 0 0 chr4 127497466 127497515 -74830832 + AT_rich Low_complexity Low_complexity 1 49 0 4029 271 63 43 chr4 127497559 127500029 -74828318 + L1MEc LINE L1 1230 3734 -2481 505 244 84 8 chr4 127500044 127500175 -74828172 + MER70A LTR ERVL 4 144 -328 2180 136 19 27 chr4 127500186 127500553 -74827794 - THE1B LTR MaLR 0 364 1 4140 96 2 46 chr4 127500553 127501158 -74827189 - THE1B-int LTR MaLR 0 1580 1003 373 314 186 9 chr4 127501254 127501464 -74826883 - L2 LINE L2 -1344 1970 1724 1271 177 25 130 chr4 127501571 127501948 -74826399 - L1MC2 LINE L1 -20 6324 6050 2216 103 0 7 chr4 127501948 127502248 -74826099 - AluSx SINE Alu -14 298 1 1271 177 25 130 chr4 127502248 127502377 -74825970 - L1MC2 LINE L1 -294 6050 5909 815 241 47 4 chr4 127502389 127502625 -74825722 - L1ME1 LINE L1 -135 6031 5786 30 0 0 0 chr4 127502939 127502969 -74825378 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr4 127503099 127503122 -74825225 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 842 185 7 0 chr4 127503122 127503268 -74825079 - FRAM SINE Alu -19 147 1 435 281 209 29 chr4 127504502 127504712 -74823635 - MIR SINE MIR 0 262 15 934 296 173 6 chr4 127505089 127505609 -74822738 - L2 LINE L2 -923 2391 1785 320 339 161 33 chr4 127505715 127506075 -74822272 + L2 LINE L2 202 607 -2707 335 339 24 54 chr4 127506330 127506498 -74821849 + L2 LINE L2 2915 3077 -195 2566 55 0 3 chr4 127506676 127506987 -74821360 - AluY SINE Alu -1 310 1 21 36 0 0 chr4 127507842 127507870 -74820477 + AT_rich Low_complexity Low_complexity 1 28 0 2095 50 111 0 chr4 127508389 127508669 -74819678 + AluY SINE Alu 1 311 0 310 295 63 0 chr4 127509067 127509162 -74819185 + MIR3 SINE MIR 92 192 -16 1629 98 8 21 chr4 127509910 127510144 -74818203 - AluSg/x SINE Alu -14 298 68 202 303 40 30 chr4 127510940 127511039 -74817308 + L2 LINE L2 3173 3272 0 23 0 0 0 chr4 127511309 127511332 -74817015 + AT_rich Low_complexity Low_complexity 1 23 0 281 320 0 19 chr4 127511408 127511511 -74816836 - MIR SINE MIR -6 256 156 191 36 36 0 chr4 127511534 127511562 -74816785 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 319 320 40 0 chr4 127512095 127512220 -74816127 + MIR3 SINE MIR 72 201 -7 22 0 0 0 chr4 127512544 127512566 -74815781 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 127512857 127512882 -74815465 + AT_rich Low_complexity Low_complexity 1 25 0 723 240 88 115 chr4 127513568 127514134 -74814213 + L1MEd LINE L1 22 572 -5547 * 1730 127 88 41 chr4 127514133 127514473 -74813874 + L1MB4 LINE L1 5445 5800 -380 1887 103 43 7 chr4 127514473 127514748 -74813599 + L1PA10 LINE L1 5861 6148 -20 192 77 0 0 chr4 127514748 127514774 -74813573 + (CAAAT)n Simple_repeat Simple_repeat 5 30 0 1621 201 16 31 chr4 127514782 127515166 -74813181 + L1MB4 LINE L1 5803 6180 0 423 263 101 51 chr4 127515168 127515385 -74812962 + L1MEd LINE L1 563 790 -5329 280 282 94 0 chr4 127515404 127515521 -74812826 + HAL1 LINE L1 1511 1638 -869 743 255 33 4 chr4 127515652 127515885 -74812462 - Charlie1b DNA MER1_type -2 521 282 340 123 55 68 chr4 127515885 127515958 -74812389 + MER4A LTR ERV1 1 72 -592 * 815 164 0 21 chr4 127515942 127516082 -74812265 + MER4A LTR ERV1 527 663 -1 1081 213 66 40 chr4 127516084 127516357 -74811990 - Charlie1b DNA MER1_type -241 282 3 5966 157 42 10 chr4 127516406 127517081 -74811266 + L1PA15 LINE L1 4095 4746 -1419 2153 115 48 28 chr4 127517081 127517438 -74810909 + THE1B LTR MaLR 1 364 0 5966 157 42 10 chr4 127517438 127518757 -74809590 + L1PA15 LINE L1 4746 6159 -6 1555 188 25 12 chr4 127519398 127519718 -74808629 - L1MA9 LINE L1 -314 5998 5675 3084 111 12 19 chr4 127519759 127520245 -74808102 - L1PA15 LINE L1 -4 6161 5679 434 299 35 83 chr4 127520304 127520726 -74807621 - L1PA12 LINE L1 -7168 413 12 672 163 3 24 chr4 127520728 127520873 -74807474 - L1P5 LINE L1 -461 5690 5546 182 36 0 36 chr4 127520973 127521001 -74807346 + (CATA)n Simple_repeat Simple_repeat 4 30 0 1871 165 131 11 chr4 127521052 127521434 -74806913 - MSTA LTR MaLR 0 428 1 5559 144 23 17 chr4 127521439 127522388 -74805959 - MSTA-int LTR MaLR -6 1574 620 643 225 27 69 chr4 127522510 127522603 -74805744 + L1MA9 LINE L1 5970 6065 -247 2146 103 0 7 chr4 127522603 127522895 -74805452 + AluSx SINE Alu 1 290 -22 643 225 27 69 chr4 127522895 127523063 -74805284 + L1MA9 LINE L1 6065 6220 -92 1912 152 34 6 chr4 127523088 127523416 -74804931 + MER1B DNA MER1_type 1 337 0 1978 144 0 3 chr4 127523715 127524021 -74804326 + AluSx SINE Alu 3 307 -5 28 0 0 0 chr4 127524274 127524302 -74804045 + AT_rich Low_complexity Low_complexity 1 28 0 1889 161 105 33 chr4 127524323 127524752 -74803595 - L1MB8 LINE L1 -2 6176 5717 1743 118 58 31 chr4 127524762 127525114 -74803233 - Tigger3(Golem) DNA MER2_type -21 3008 1 1015 207 135 32 chr4 127525119 127525525 -74802822 - L1MB8 LINE L1 -486 5698 5227 898 79 29 7 chr4 127525626 127525766 -74802581 + L1PA12 LINE L1 6026 6168 0 187 316 92 0 chr4 127526312 127526388 -74801959 - L2 LINE L2 -941 2373 2291 7742 195 43 67 chr4 127526610 127529023 -74799324 + L1M4 LINE L1 3089 5435 -743 14773 119 14 38 chr4 127529124 127531611 -74796736 - L1P LINE L1 -2208 3938 1511 944 212 129 12 chr4 127531612 127531853 -74796494 + L2 LINE L2 2511 2779 -535 1782 153 189 0 chr4 127531872 127532232 -74796115 + MSTA LTR MaLR 1 428 0 1907 113 57 39 chr4 127532232 127532568 -74795779 + MSTA-int LTR MaLR 4 345 -1235 9235 100 10 14 chr4 127532673 127534804 -74793543 + L1PA10 LINE L1 4032 6166 -2 224 226 0 24 chr4 127534937 127535021 -74793326 + (TATG)n Simple_repeat Simple_repeat 2 83 0 1259 307 50 18 chr4 127536103 127536540 -74791807 + L2 LINE L2 2854 3304 -9 186 103 0 0 chr4 127536589 127536618 -74791729 + (TATG)n Simple_repeat Simple_repeat 4 32 0 285 29 0 0 chr4 127536675 127536709 -74791638 + (CA)n Simple_repeat Simple_repeat 1 34 0 240 86 0 0 chr4 127536710 127536745 -74791602 + (TC)n Simple_repeat Simple_repeat 2 36 0 2232 57 53 0 chr4 127537224 127537507 -74790840 - AluY SINE Alu -13 298 1 21 36 0 0 chr4 127537829 127537857 -74790490 + AT_rich Low_complexity Low_complexity 1 28 0 6707 120 16 5 chr4 127538062 127539240 -74789107 - L1MA4 LINE L1 -11 6289 5090 351 252 76 25 chr4 127540557 127540676 -74787671 + MER104 DNA Tc2 51 175 -5 381 338 15 19 chr4 127542162 127542431 -74785916 + L1MEc LINE L1 676 943 -5453 7159 204 54 52 chr4 127542439 127546238 -74782109 + L1PA3 LINE L1 2380 6182 0 1000 199 3 87 chr4 127546511 127546833 -74781514 + L1ME LINE L1 4381 4675 -1471 1137 61 0 3 chr4 127546842 127547071 -74781276 - AluYa8 SINE Alu -5 305 1 715 235 108 30 chr4 127547074 127547342 -74781005 + L1ME LINE L1 4681 4969 -1177 2440 73 0 0 chr4 127547343 127547643 -74780704 + AluY SINE Alu 1 300 -11 1511 177 56 73 chr4 127547644 127548231 -74780116 + L1ME LINE L1 5141 5713 -451 305 239 55 55 chr4 127548640 127548749 -74779598 - L2 LINE L2 -2 3311 3203 3284 100 30 63 chr4 127550239 127550830 -74777517 - L1MA3 LINE L1 0 6305 5734 1941 125 44 3 chr4 127551213 127551508 -74776839 + AluSg SINE Alu 1 307 -3 2163 106 7 3 chr4 127552677 127552978 -74775369 - AluSq SINE Alu -11 302 1 241 57 0 0 chr4 127553784 127553819 -74774528 - HSMAR1 DNA Mariner -1252 35 1 207 114 0 0 chr4 127554560 127554595 -74773752 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr4 127555736 127555757 -74772590 + AT_rich Low_complexity Low_complexity 1 21 0 3104 136 14 0 chr4 127556232 127556740 -74771607 - L1MB1 LINE L1 0 6168 5654 216 263 18 0 chr4 127556985 127557042 -74771305 + (TTG)n Simple_repeat Simple_repeat 1 58 0 555 318 38 17 chr4 127557184 127557420 -74770927 + MIR SINE MIR 10 250 -12 416 356 18 0 chr4 127558153 127558316 -74770031 + L2 LINE L2 1029 1194 -2120 2392 313 102 47 chr4 127558359 127559644 -74768703 + L2 LINE L2 1442 2826 -487 2297 99 3 0 chr4 127559644 127559946 -74768401 - AluSp SINE Alu -10 303 1 2392 313 102 47 chr4 127559946 127560189 -74768158 + L2 LINE L2 2826 3054 -259 1978 218 31 14 chr4 127560581 127561068 -74767279 + L1MD1 LINE L1 4636 5130 -1016 783 321 135 45 chr4 127561217 127561987 -74766360 - L2 LINE L2 -1977 1337 499 301 287 40 20 chr4 127562019 127562120 -74766227 - L2 LINE L2 -2074 1240 1138 454 321 89 18 chr4 127562322 127562546 -74765801 - MIR SINE MIR -10 252 13 1248 214 47 10 chr4 127563053 127563376 -74764971 - L1MC4 LINE L1 -17 8025 7454 12510 147 68 14 chr4 127563377 127565669 -74762678 + Tigger1 DNA MER2_type 2 2418 0 10665 160 20 13 chr4 127565669 127567649 -74760698 - L1M4c LINE L1 -4374 2010 18 220 333 128 35 chr4 127567823 127567964 -74760383 + MER5B DNA MER1_type 1 154 -24 209 255 0 0 chr4 127568477 127568524 -74759823 + CT-rich Low_complexity Low_complexity 4 50 0 441 312 54 47 chr4 127568567 127568846 -74759501 + L2 LINE L2 3032 3312 -1 4014 216 28 0 chr4 127569311 127570167 -74758180 + L1MD1 LINE L1 5350 6229 -13 420 241 0 0 chr4 127571701 127571784 -74756563 - MLT1E2-int LTR MaLR -507 864 782 274 233 17 0 chr4 127572085 127572145 -74756202 - MLT1E2-int LTR MaLR -771 600 540 1573 278 48 11 chr4 127572145 127572684 -74755663 - MLT1E2-int LTR MaLR -807 564 6 1128 266 60 14 chr4 127572686 127573039 -74755308 - MLT1E2 LTR MaLR -1 625 257 298 332 155 44 chr4 127573440 127574153 -74754194 - L2 LINE L2 -1 3312 2512 262 349 46 37 chr4 127574517 127574735 -74753612 - MIR SINE MIR -28 234 15 251 315 105 37 chr4 127575230 127575392 -74752955 - MIR SINE MIR -70 192 20 22 0 0 0 chr4 127576730 127576752 -74751595 + AT_rich Low_complexity Low_complexity 1 22 0 375 226 0 0 chr4 127577088 127577190 -74751157 + CT-rich Low_complexity Low_complexity 3 104 0 332 173 57 43 chr4 127577545 127577646 -74750701 + MIR SINE MIR 63 163 -45 267 54 0 0 chr4 127577649 127577686 -74750661 + MADE1 DNA Mariner 1 37 -43 267 315 0 0 chr4 127577689 127577762 -74750585 + MIR SINE MIR 181 253 -9 1449 198 29 18 chr4 127577787 127578060 -74750287 - AluJb SINE Alu -36 276 1 23 0 0 0 chr4 127579159 127579182 -74749165 + AT_rich Low_complexity Low_complexity 1 23 0 701 167 0 51 chr4 127580256 127580394 -74747953 + AluJo SINE Alu 1 131 -181 192 268 89 0 chr4 127581060 127581116 -74747231 + MIR SINE MIR 172 232 -30 1099 214 66 0 chr4 127581229 127581493 -74746854 + L1MB5 LINE L1 5500 5784 -400 601 191 125 0 chr4 127581494 127581646 -74746701 + L1MB5 LINE L1 5982 6152 -22 268 330 85 0 chr4 127582011 127582117 -74746230 - MIR3 SINE MIR -13 195 81 733 109 0 0 chr4 127582717 127582818 -74745529 + HY3 scRNA scRNA 1 101 0 735 147 15 116 chr4 127582836 127583034 -74745313 + AluJo SINE Alu 123 300 -12 234 259 12 25 chr4 127583479 127583560 -74744787 + GA-rich Low_complexity Low_complexity 2 81 0 1772 189 0 3 chr4 127583722 127584024 -74744323 + AluJb SINE Alu 1 301 -11 321 195 26 0 chr4 127584189 127584266 -74744081 - L1MC4 LINE L1 -3 8039 7961 200 35 35 0 chr4 127584269 127584298 -74744049 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 42914 33 21 1 chr4 127584313 127590346 -74738001 - L1HS LINE L1 0 6155 1 510 275 124 17 chr4 127590444 127590677 -74737670 - L1MC4 LINE L1 -157 7885 7628 216 0 0 0 chr4 127590896 127590920 -74737427 + (T)n Simple_repeat Simple_repeat 1 24 0 1065 294 40 20 chr4 127591226 127591758 -74736589 - L1M4c LINE L1 -4524 1858 1267 661 231 102 117 chr4 127591912 127592184 -74736163 - L1ME LINE L1 -4779 1301 1026 2095 116 7 7 chr4 127592184 127592476 -74735871 - AluSx SINE Alu -20 292 1 1827 153 25 40 chr4 127592481 127592879 -74735468 - L1MA5A LINE L1 0 6297 5906 661 231 102 117 chr4 127592879 127592974 -74735373 - L1ME LINE L1 -5058 1022 927 2412 84 0 0 chr4 127592974 127593271 -74735076 - AluY SINE Alu -14 297 1 661 231 102 117 chr4 127593271 127593578 -74734769 - L1ME LINE L1 -5153 927 649 26 50 0 0 chr4 127593629 127593669 -74734678 + AT_rich Low_complexity Low_complexity 1 40 0 218 122 0 24 chr4 127595246 127595287 -74733060 + (TA)n Simple_repeat Simple_repeat 2 41 0 195 42 0 0 chr4 127596513 127596537 -74731810 + (TC)n Simple_repeat Simple_repeat 2 25 0 213 39 0 0 chr4 127596542 127596568 -74731779 + (TG)n Simple_repeat Simple_repeat 1 26 0 309 145 0 0 chr4 127596568 127596630 -74731717 + (GA)n Simple_repeat Simple_repeat 2 63 0 1779 185 85 20 chr4 127597603 127598003 -74730344 - MSTA LTR MaLR 0 428 3 2192 134 30 14 chr4 127598005 127598371 -74729976 - MSTA-int LTR MaLR 0 1580 1209 245 165 113 105 chr4 127600215 127600264 -74728083 - L1MA4 LINE L1 -4 6296 6249 1785 201 68 2 chr4 127600264 127600662 -74727685 - MSTB LTR MaLR -2 424 1 245 165 113 105 chr4 127600662 127600745 -74727602 - L1MA4 LINE L1 -51 6249 6163 243 128 0 0 chr4 127600746 127600785 -74727562 - MADE1 DNA Mariner 0 80 42 1017 205 35 5 chr4 127601697 127601897 -74726450 - AluJo SINE Alu -18 294 89 2180 133 0 9 chr4 127603269 127603584 -74724763 + AluSx SINE Alu 1 312 0 22 35 0 0 chr4 127603944 127603973 -74724374 + AT_rich Low_complexity Low_complexity 1 29 0 234 292 0 34 chr4 127604466 127604555 -74723792 - L1ME LINE L1 -301 5869 5784 351 0 0 0 chr4 127604570 127604609 -74723738 + (TAGA)n Simple_repeat Simple_repeat 3 41 0 273 254 36 98 chr4 127604789 127605064 -74723283 - L1M4 LINE L1 -3109 3037 2780 4686 188 30 28 chr4 127605100 127606253 -74722094 - L1MA4 LINE L1 -55 6245 5080 4764 170 24 53 chr4 127606493 127608509 -74719838 - L1MA4 LINE L1 -55 6245 4269 26 0 0 0 chr4 127608825 127608851 -74719496 + AT_rich Low_complexity Low_complexity 1 26 0 1658 84 22 4 chr4 127609380 127609605 -74718742 + MER30 DNA MER1_type 2 230 0 34 42 0 0 chr4 127610157 127610205 -74718142 + AT_rich Low_complexity Low_complexity 1 48 0 5101 160 28 23 chr4 127610292 127610450 -74717897 + L1MA8 LINE L1 5167 5323 -968 2054 122 14 0 chr4 127610450 127610736 -74717611 + AluSq SINE Alu 1 290 -23 5101 160 28 23 chr4 127610736 127611689 -74716658 + L1MA8 LINE L1 5323 6291 0 454 268 46 43 chr4 127612079 127612381 -74715966 + L1ME LINE L1 2852 3154 -2992 309 255 104 47 chr4 127612469 127612575 -74715772 + L1ME LINE L1 5486 5597 -569 269 352 40 16 chr4 127612710 127612835 -74715512 - L2 LINE L2 -12 3260 3133 498 237 9 9 chr4 127613160 127613274 -74715073 + FLAM_A SINE Alu 2 115 -18 30 27 0 0 chr4 127613738 127613775 -74714572 + AT_rich Low_complexity Low_complexity 1 37 0 458 306 97 23 chr4 127614809 127615025 -74713322 - MIR SINE MIR -17 245 14 36 0 0 0 chr4 127615646 127615682 -74712665 + AT_rich Low_complexity Low_complexity 1 36 0 587 263 178 36 chr4 127616024 127616473 -74711874 + MER113 DNA MER1_type? 6 518 -3 364 326 75 0 chr4 127616509 127616688 -74711659 + MIR SINE MIR 45 236 -26 243 277 94 45 chr4 127616679 127616881 -74711466 - L2 LINE L2 -4 3309 3098 * 297 0 0 0 chr4 127617215 127617248 -74711099 + (TG)n Simple_repeat Simple_repeat 2 34 0 188 284 117 62 chr4 127618458 127618620 -74709727 + MIR SINE MIR 52 222 -40 2049 196 35 0 chr4 127619309 127619711 -74708636 + MLT2C2 LTR ERVL 1 416 -48 345 100 0 0 chr4 127619726 127619776 -74708571 + (CA)n Simple_repeat Simple_repeat 1 50 0 306 314 24 0 chr4 127619795 127619919 -74708428 + (TA)n Simple_repeat Simple_repeat 1 127 0 191 163 0 23 chr4 127619927 127619970 -74708377 + (TATG)n Simple_repeat Simple_repeat 3 44 0 259 119 0 24 chr4 127619971 127620013 -74708334 + MLT2C2 LTR ERVL 473 513 -7 190 304 36 0 chr4 127621405 127621461 -74706886 + L2 LINE L2 3190 3247 -25 2285 206 57 12 chr4 127621803 127622308 -74706039 - MER74A LTR ERVL -24 534 7 27 0 0 0 chr4 127623086 127623113 -74705234 + AT_rich Low_complexity Low_complexity 1 27 0 525 280 141 51 chr4 127623221 127623689 -74704658 + L1M4 LINE L1 2117 2626 -3520 390 157 5 68 chr4 127623721 127623912 -74704435 + (TA)n Simple_repeat Simple_repeat 2 180 0 306 221 94 55 chr4 127623912 127624039 -74704308 + L1MC4 LINE L1 6610 6741 -1301 336 157 0 0 chr4 127624094 127624145 -74704202 + L1MA4 LINE L1 1240 1290 -5275 309 311 81 42 chr4 127624159 127624468 -74703879 - MER50 LTR ERV1 -406 328 8 339 195 37 12 chr4 127624566 127624648 -74703699 + L1MA4 LINE L1 1240 1323 -5242 12403 200 36 33 chr4 127624662 127624902 -74703445 + L1MA4 LINE L1 3202 3440 -4279 2288 102 3 6 chr4 127624902 127625215 -74703132 + AluSx SINE Alu 1 312 0 12403 200 36 33 chr4 127625215 127625425 -74702922 + L1MA4 LINE L1 3440 3648 -4071 2019 88 3 14 chr4 127625425 127625722 -74702625 + L1PA8 LINE L1 5879 6172 0 12403 200 36 33 chr4 127625722 127627741 -74700606 + L1MA4 LINE L1 3648 5658 -2061 1197 77 12 6 chr4 127627741 127627910 -74700437 + L1PA8 LINE L1 5992 6161 -11 12403 200 36 33 chr4 127627910 127629896 -74698451 + L1MA4 LINE L1 5658 7677 -42 497 265 125 69 chr4 127629930 127630379 -74697968 + L1M4 LINE L1 2772 3245 -2901 25 0 0 0 chr4 127630379 127630404 -74697943 + AT_rich Low_complexity Low_complexity 1 25 0 207 235 0 0 chr4 127630683 127630734 -74697613 + (TA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr4 127630806 127630827 -74697520 + AT_rich Low_complexity Low_complexity 1 21 0 3485 49 0 11 chr4 127631026 127631479 -74696868 + LTR7 LTR ERV1 1 448 -2 19536 87 54 72 chr4 127631481 127634832 -74693515 + HERVH LTR ERV1 1 3290 -4423 3218 129 6 8 chr4 127634822 127635332 -74693015 + HERVH LTR ERV1 3492 4000 -3713 * 4375 143 0 1 chr4 127635326 127635989 -74692358 + HERVH LTR ERV1 4488 5149 -2564 1409 122 19 0 chr4 127635990 127636204 -74692143 + HERVH LTR ERV1 5600 5817 -1896 2525 66 48 13 chr4 127636206 127636583 -74691764 + HERVH LTR ERV1 7324 7713 0 3407 56 11 7 chr4 127636583 127637029 -74691318 + LTR7 LTR ERV1 1 448 -2 21 0 0 0 chr4 127639122 127639143 -74689204 + AT_rich Low_complexity Low_complexity 1 21 0 259 229 76 48 chr4 127640925 127641030 -74687317 + MLT1H LTR MaLR 383 490 -59 6661 184 20 16 chr4 127641111 127642665 -74685682 + L1M3f LINE L1 2 1624 -4065 2003 213 19 2 chr4 127642889 127643306 -74685041 + MSTB LTR MaLR 1 424 -2 22 0 0 0 chr4 127643326 127643348 -74684999 + AT_rich Low_complexity Low_complexity 1 22 0 204 387 73 7 chr4 127644545 127644682 -74683665 - MIR SINE MIR -86 176 31 446 248 76 0 chr4 127646191 127646336 -74682011 - L1MC5 LINE L1 -503 7458 7303 778 217 18 0 chr4 127646474 127646640 -74681707 + FRAM SINE Alu 1 162 -14 187 286 91 13 chr4 127647320 127647397 -74680950 + MIR SINE MIR 80 162 -100 22 0 0 0 chr4 127649992 127650014 -74678333 + AT_rich Low_complexity Low_complexity 1 22 0 14888 213 10 8 chr4 127650021 127650375 -74677972 - L1PB1 LINE L1 -8 6143 5791 186 43 0 0 chr4 127650375 127650398 -74677949 + (CATATA)n Simple_repeat Simple_repeat 2 24 0 300 53 0 0 chr4 127650400 127650438 -74677909 + (TG)n Simple_repeat Simple_repeat 2 39 0 14888 213 10 8 chr4 127650438 127654531 -74673816 - L1PB1 LINE L1 -360 5791 1703 27 29 0 0 chr4 127654890 127654924 -74673423 + AT_rich Low_complexity Low_complexity 1 34 0 188 280 0 0 chr4 127655797 127655847 -74672500 + L2 LINE L2 3264 3313 0 2563 53 0 0 chr4 127657094 127657395 -74670952 - AluY SINE Alu -10 301 1 2399 86 0 9 chr4 127657573 127657888 -74670459 - AluSx SINE Alu 0 312 1 2268 97 3 0 chr4 127659089 127659388 -74668959 + AluSc SINE Alu 1 300 -9 214 280 0 0 chr4 127659475 127659525 -74668822 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 24 32 0 0 chr4 127661148 127661179 -74667168 + AT_rich Low_complexity Low_complexity 1 31 0 1325 252 82 69 chr4 127661265 127661618 -74666729 + L1MDa LINE L1 1124 1471 -5069 2151 126 32 8 chr4 127661618 127661998 -74666349 + L1MA5A LINE L1 5909 6297 0 1325 252 82 69 chr4 127661998 127662027 -74666320 + L1MDa LINE L1 1471 1498 -5042 2148 123 3 0 chr4 127662027 127662320 -74666027 + AluSx SINE Alu 5 298 -14 1325 252 82 69 chr4 127662320 127662849 -74665498 + L1MDa LINE L1 1498 2048 -4492 615 226 45 108 chr4 127663466 127663856 -74664491 + L1MC4 LINE L1 7689 7995 0 203 266 13 25 chr4 127664153 127664232 -74664115 + CT-rich Low_complexity Low_complexity 2 79 0 210 221 23 35 chr4 127664378 127664464 -74663883 + (TTAAA)n Simple_repeat Simple_repeat 2 86 0 26 50 0 0 chr4 127664798 127664838 -74663509 + AT_rich Low_complexity Low_complexity 1 40 0 630 193 18 0 chr4 127664840 127664954 -74663393 - FLAM_A SINE Alu -17 116 1 1627 175 34 10 chr4 127664983 127665275 -74663072 + AluJb SINE Alu 1 299 -13 23 0 0 0 chr4 127665341 127665364 -74662983 + AT_rich Low_complexity Low_complexity 1 23 0 247 267 0 0 chr4 127665822 127665882 -74662465 + MIR SINE MIR 79 138 -124 1065 195 20 34 chr4 127666267 127666685 -74661662 - L1MB5 LINE L1 -25 6153 5535 737 179 16 0 chr4 127667546 127667669 -74660678 - FLAM_C SINE Alu -8 125 1 630 266 52 0 chr4 127669816 127669970 -74658377 - MIR SINE MIR -9 253 92 329 253 6 18 chr4 127670333 127670499 -74657848 + GA-rich Low_complexity Low_complexity 3 166 0 2768 22 0 0 chr4 127670845 127671200 -74657147 + L1PA3 LINE L1 5827 6181 0 21 36 0 0 chr4 127671517 127671545 -74656802 + AT_rich Low_complexity Low_complexity 1 28 0 303 296 69 18 chr4 127671974 127672153 -74656194 + MIR SINE MIR 7 192 -67 398 344 40 28 chr4 127672647 127672897 -74655450 + MIR SINE MIR 10 262 0 414 320 162 31 chr4 127673257 127673958 -74654389 + L2 LINE L2 2516 3312 -1 1109 264 28 12 chr4 127674373 127674699 -74653648 + MLT1E2 LTR MaLR 296 626 0 2062 230 24 64 chr4 127674699 127675325 -74653022 + MLT1E2-int LTR MaLR 1 601 -770 362 274 11 11 chr4 127675631 127675726 -74652621 + MLT1E2-int LTR MaLR 793 887 -484 217 212 172 30 chr4 127676054 127676153 -74652194 + MIR SINE MIR 148 260 -2 4153 188 40 8 chr4 127677200 127678065 -74650282 - L1MD1 LINE L1 0 6242 5350 193 348 139 9 chr4 127678393 127678508 -74649839 + L2 LINE L2 3143 3272 0 323 339 57 62 chr4 127678554 127678923 -74649424 - L2 LINE L2 -1 3312 2946 267 252 170 75 chr4 127679447 127679594 -74648753 + MER5B DNA MER1_type 12 172 -6 2042 116 3 26 chr4 127679699 127680001 -74648346 + AluSx SINE Alu 2 296 -16 286 91 159 0 chr4 127680086 127680130 -74648217 + L1M4c LINE L1 19 69 -6315 5810 168 29 45 chr4 127680140 127681419 -74646928 + L1M4c LINE L1 414 1673 -4711 2034 112 28 7 chr4 127681419 127681706 -74646641 + AluSx SINE Alu 8 300 -12 465 141 50 50 chr4 127681707 127681828 -74646519 + L1M4c LINE L1 1891 2011 -4373 * 12214 133 98 36 chr4 127681829 127682505 -74645842 - Tigger1 DNA MER2_type -2 2416 1783 2192 115 26 0 chr4 127682505 127682810 -74645537 - AluSq SINE Alu 0 313 1 12214 133 98 36 chr4 127682810 127684409 -74643938 - Tigger1 DNA MER2_type -635 1783 1 2283 197 30 49 chr4 127684409 127684890 -74643457 + L1M4c LINE L1 2009 2452 -3930 702 208 0 0 chr4 127684890 127685015 -74643332 - FLAM_A SINE Alu -8 125 1 2283 197 30 49 chr4 127685015 127685439 -74642908 + L1M4c LINE L1 2452 2883 -3499 1045 168 20 11 chr4 127685450 127685680 -74642667 + L1MB3 LINE L1 5957 6178 0 891 205 14 74 chr4 127685766 127685981 -74642366 - MLT1A2 LTR MaLR 0 374 173 310 151 19 0 chr4 127685978 127686031 -74642316 - MLT1A2 LTR MaLR -336 54 1 * 321 135 0 0 chr4 127686158 127686210 -74642137 + (TC)n Simple_repeat Simple_repeat 2 53 0 711 303 50 12 chr4 127686286 127686527 -74641820 + MIR SINE MIR 9 258 -4 364 295 158 16 chr4 127686623 127686813 -74641534 - MIR SINE MIR -17 245 29 532 218 45 6 chr4 127687483 127687639 -74640708 - MER96B DNA MER1_type? 0 417 256 241 269 65 19 chr4 127688353 127688461 -74639886 + HAL1 LINE L1 2250 2362 -145 22 0 0 0 chr4 127689117 127689139 -74639208 + AT_rich Low_complexity Low_complexity 1 22 0 222 37 0 0 chr4 127689565 127689592 -74638755 + (CA)n Simple_repeat Simple_repeat 1 27 0 464 239 103 0 chr4 127691614 127691731 -74636616 + MIR SINE MIR 77 205 -57 221 255 20 0 chr4 127692111 127692162 -74636185 + MIR SINE MIR 195 246 -16 30 27 0 0 chr4 127692922 127692959 -74635388 + AT_rich Low_complexity Low_complexity 1 37 0 657 212 169 5 chr4 127694411 127694600 -74633747 + MER58A DNA MER1_type 4 223 -1 325 197 30 0 chr4 127694651 127694717 -74633630 + MLT1I LTR MaLR 57 124 -285 2051 103 20 10 chr4 127695215 127695516 -74632831 - AluSg SINE Alu -6 304 1 2015 129 4 0 chr4 127695709 127695987 -74632360 + AluSg SINE Alu 1 279 -31 206 210 161 0 chr4 127696240 127696302 -74632045 + MIR SINE MIR 177 248 -14 1368 119 136 4 chr4 127697845 127698081 -74630266 + MER44D DNA MER2_type 282 603 -2 768 371 93 12 chr4 127700024 127700677 -74627670 - L2 LINE L2 -487 2827 2122 482 213 202 27 chr4 127700699 127700882 -74627465 - MER58C DNA MER1_type 0 215 1 1661 109 86 0 chr4 127701104 127701360 -74626987 + AluSg1 SINE Alu 16 293 -16 769 191 18 124 chr4 127701762 127701987 -74626360 + MER20 DNA MER1_type 1 201 -18 1073 187 110 13 chr4 127705111 127705406 -74622941 - MLT1E3 LTR MaLR -2 622 258 518 227 60 8 chr4 127705410 127705623 -74622724 - MLT1E1 LTR MaLR -354 300 7 1907 154 52 32 chr4 127706589 127706991 -74621356 - MER95 LTR ERV -16 415 6 278 133 0 0 chr4 127707018 127707063 -74621284 + L2 LINE L2 3269 3313 0 202 225 135 90 chr4 127707299 127707388 -74620959 - MER5A DNA MER1_type -1 188 96 963 207 56 11 chr4 127707395 127707661 -74620686 + MER33 DNA MER1_type 42 319 -5 203 272 49 37 chr4 127707675 127707756 -74620591 - MER5A DNA MER1_type -104 85 4 316 329 73 24 chr4 127708385 127708549 -74619798 - MIR3 SINE MIR -6 202 31 2168 126 0 0 chr4 127708909 127709210 -74619137 - AluSg SINE Alu -9 301 1 1033 159 75 35 chr4 127709298 127709525 -74618822 + MER46A DNA MER2_type 1 236 0 1180 123 88 48 chr4 127709988 127710216 -74618131 - MSTB1 LTR MaLR -195 237 1 1737 138 29 80 chr4 127710217 127710355 -74617992 + L1MB1 LINE L1 5809 5952 -216 992 176 0 6 chr4 127710355 127710514 -74617833 + FAM SINE Alu 1 158 -17 1737 138 29 80 chr4 127710514 127710752 -74617595 + L1MB1 LINE L1 5952 6166 -2 2744 244 57 25 chr4 127710766 127711833 -74616514 + L1ME4a LINE L1 2159 3206 -3009 343 222 51 8 chr4 127711877 127711994 -74616353 + HAL1 LINE L1 2270 2391 -116 282 297 146 5 chr4 127712384 127712576 -74615771 + L1ME4a LINE L1 5672 5890 -1987 30 0 0 0 chr4 127712648 127712678 -74615669 + AT_rich Low_complexity Low_complexity 1 30 0 276 30 0 0 chr4 127713044 127713077 -74615270 + (TC)n Simple_repeat Simple_repeat 1 33 0 216 0 0 0 chr4 127713076 127713100 -74615247 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 405 103 0 0 chr4 127713417 127713485 -74614862 + (TC)n Simple_repeat Simple_repeat 2 69 0 1757 170 11 0 chr4 127714555 127714838 -74613509 + AluJo SINE Alu 15 300 -12 1957 140 143 13 chr4 127714866 127715245 -74613102 + MSTA LTR MaLR 1 428 0 212 261 11 11 chr4 127715266 127715358 -74612989 + (TA)n Simple_repeat Simple_repeat 2 93 0 242 151 38 0 chr4 127715370 127715423 -74612924 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 248 267 23 12 chr4 127715432 127715518 -74612829 + L1ME4a LINE L1 6008 6094 -96 255 364 121 4 chr4 127715874 127716146 -74612201 + L3 LINE CR1 1092 1395 -182 238 250 73 42 chr4 127717145 127717241 -74611106 - MIR SINE MIR -46 216 118 194 385 0 0 chr4 127717375 127717471 -74610876 + MIR3 SINE MIR 105 200 -8 295 342 93 73 chr4 127717603 127717904 -74610443 - L2 LINE L2 -16 3256 2950 182 318 68 0 chr4 127718035 127718123 -74610224 - MIR SINE MIR -119 143 50 21 36 0 0 chr4 127719263 127719291 -74609056 + AT_rich Low_complexity Low_complexity 1 28 0 2114 80 0 4 chr4 127719633 127719895 -74608452 + AluY SINE Alu 29 289 -22 1352 106 0 72 chr4 127721416 127721652 -74606695 + LTR22A LTR ERVK 1 219 -239 227 316 32 42 chr4 127721747 127721842 -74606505 - MIR3 SINE MIR -103 105 12 24 53 0 0 chr4 127723110 127723148 -74605199 + AT_rich Low_complexity Low_complexity 1 38 0 363 359 126 21 chr4 127723218 127723837 -74604510 + L2 LINE L2 2072 2755 -559 230 284 15 15 chr4 127724035 127724102 -74604245 + L2 LINE L2 2998 3064 -208 232 268 309 8 chr4 127724124 127724247 -74604100 + MER5A DNA MER1_type 30 189 0 221 191 0 43 chr4 127724264 127724311 -74604036 + MER5A DNA MER1_type 21 65 -124 2977 209 36 72 chr4 127724311 127724759 -74603588 + L1ME1 LINE L1 5229 5691 -475 2084 126 0 4 chr4 127724759 127725091 -74603256 + AluSx SINE Alu 8 338 0 2977 209 36 72 chr4 127725091 127725618 -74602729 + L1ME1 LINE L1 5691 6165 -1 596 212 38 60 chr4 127725643 127725827 -74602520 + MER104 DNA MER2_type 1 180 0 1645 195 3 20 chr4 127725894 127726191 -74602156 + AluJo SINE Alu 1 292 -20 1200 231 101 25 chr4 127726450 127727044 -74601303 - Charlie2 DNA MER1_type -6 2856 2218 342 0 0 0 chr4 127727173 127727211 -74601136 + (TG)n Simple_repeat Simple_repeat 2 39 0 350 278 0 0 chr4 127727212 127727302 -74601045 - Charlie2 DNA MER1_type -891 1971 1882 1676 246 65 32 chr4 127727788 127728231 -74600116 - LTR40a LTR ERVL 0 519 62 1902 275 112 43 chr4 127728241 127728729 -74599618 - Charlie2a DNA MER1_type -1824 1038 585 1598 161 56 4 chr4 127728729 127728996 -74599351 + AluJb SINE Alu 3 283 -29 1902 275 112 43 chr4 127728996 127729010 -74599337 - Charlie2a DNA MER1_type -2277 585 573 180 77 0 0 chr4 127729010 127729036 -74599311 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1902 275 112 43 chr4 127729036 127729475 -74598872 - Charlie2a DNA MER1_type -2289 573 31 814 235 24 24 chr4 127730556 127730769 -74597578 + Charlie1 DNA MER1_type 30 242 -2519 662 176 7 7 chr4 127730751 127730887 -74597460 + Charlie1 DNA MER1_type 2620 2755 -6 * 2129 71 7 0 chr4 127730926 127731209 -74597138 + L1PA7 LINE L1 5869 6153 -1 1731 133 60 86 chr4 127731598 127731983 -74596364 + THE1C LTR MaLR 1 375 0 9905 126 34 9 chr4 127731985 127733524 -74594823 + THE1C-int LTR MaLR 3 1580 0 1679 144 32 102 chr4 127733524 127733773 -74594574 + THE1C LTR MaLR 1 213 -162 2282 85 0 29 chr4 127733773 127734079 -74594268 + AluY SINE Alu 1 297 -14 1679 144 32 102 chr4 127734079 127734232 -74594115 + THE1C LTR MaLR 213 375 0 6889 157 19 1 chr4 127736612 127737699 -74590648 + L1PA13 LINE L1 4084 5191 -972 435 83 0 0 chr4 127737699 127737759 -74590588 + (TA)n Simple_repeat Simple_repeat 2 61 0 6889 157 19 1 chr4 127737759 127738747 -74589600 + L1PA13 LINE L1 5191 6160 -3 2223 145 62 0 chr4 127739293 127739651 -74588696 + MSTA LTR MaLR 1 380 -48 3295 71 45 0 chr4 127739779 127740204 -74588143 - MLT2A1 LTR ERVL 0 444 1 847 256 72 61 chr4 127740294 127740654 -74587693 - LTR40c LTR ERVL -34 431 68 4121 79 5 9 chr4 127740655 127741111 -74587236 + MER41A LTR ERV1 3 458 -96 2516 181 95 53 chr4 127741111 127741698 -74586649 + LTR9 LTR ERV1 1 612 0 4121 79 5 9 chr4 127741698 127741795 -74586552 + MER41A LTR ERV1 458 554 0 261 271 17 0 chr4 127741821 127741880 -74586467 - MER5A DNA MER1_type -121 68 9 218 312 86 0 chr4 127741907 127742000 -74586347 + MER5A DNA MER1_type 61 161 -28 1503 208 81 69 chr4 127742197 127742625 -74585722 + MER34B LTR ERV1 11 470 -115 2334 134 65 2 chr4 127742625 127743028 -74585319 + MSTA LTR MaLR 1 428 0 1503 208 81 69 chr4 127743028 127743146 -74585201 + MER34B LTR ERV1 470 585 0 360 404 58 25 chr4 127744303 127744736 -74583611 + L2 LINE L2 2157 2603 -711 407 274 69 34 chr4 127745039 127745243 -74583104 + MIR SINE MIR 2 212 -50 2528 45 0 0 chr4 127746165 127746454 -74581893 - AluY SINE Alu -22 289 1 198 0 0 0 chr4 127747274 127747296 -74581051 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 207 0 0 0 chr4 127747854 127747877 -74580470 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1440 217 70 46 chr4 127748151 127748677 -74579670 + Charlie2a DNA MER1_type 1592 2130 -732 273 333 0 14 chr4 127748678 127748750 -74579597 + Charlie1 DNA MER1_type 1 71 -2690 * 1704 158 47 59 chr4 127748748 127749128 -74579219 + Charlie1 DNA MER1_type 2343 2719 -42 2841 7 0 0 chr4 127749128 127749434 -74578913 + AluY SINE Alu 1 306 -5 1704 158 47 59 chr4 127749434 127749476 -74578871 + Charlie1 DNA MER1_type 2719 2760 -1 978 217 128 18 chr4 127749476 127749910 -74578437 + Charlie2a DNA MER1_type 2121 2602 -260 1164 221 160 9 chr4 127750259 127750584 -74577763 - MLT1A2 LTR MaLR 0 374 1 3846 230 39 80 chr4 127750585 127752014 -74576333 - MLT1A2-int LTR MaLR -1 1370 1 2196 204 57 35 chr4 127752014 127752523 -74575824 - MLT2B1 LTR ERVL 0 520 1 446 162 0 0 chr4 127752841 127752909 -74575438 - AluJ SINE Alu -53 259 192 237 164 0 82 chr4 127752909 127752970 -74575377 - AluJ SINE Alu -183 119 64 187 424 32 20 chr4 127753019 127753269 -74575078 + L2 LINE L2 2423 2675 -639 194 330 66 9 chr4 127754047 127754153 -74574194 + L2 LINE L2 2911 3022 -250 2310 194 36 6 chr4 127754888 127755382 -74572965 + L1MB5 LINE L1 5658 6166 -8 341 358 73 29 chr4 127756590 127756906 -74571441 - L2 LINE L2 -404 2910 2581 1813 114 7 11 chr4 127757196 127757509 -74570838 - AluSg SINE Alu 0 351 40 397 312 32 13 chr4 127757639 127757793 -74570554 - L2 LINE L2 -1259 2055 1899 22 0 0 0 chr4 127757877 127757899 -74570448 + AT_rich Low_complexity Low_complexity 1 22 0 577 279 34 6 chr4 127758276 127758455 -74569892 + MIR SINE MIR 15 198 -64 1288 280 29 0 chr4 127758536 127758879 -74569468 - L2 LINE L2 -1093 2221 1869 22 0 0 0 chr4 127759516 127759538 -74568809 + AT_rich Low_complexity Low_complexity 1 22 0 432 55 0 0 chr4 127760235 127760290 -74568057 + (CA)n Simple_repeat Simple_repeat 2 56 0 229 196 0 0 chr4 127760305 127760361 -74567986 + (TA)n Simple_repeat Simple_repeat 1 56 0 250 188 0 0 chr4 127760847 127760895 -74567452 + Alu SINE Alu 240 287 -15 287 188 35 0 chr4 127760895 127760980 -74567367 + (TA)n Simple_repeat Simple_repeat 1 88 0 631 306 86 37 chr4 127761055 127762094 -74566253 + L1MC4a LINE L1 2702 3846 -2300 1643 189 7 20 chr4 127762094 127762395 -74565952 - AluJb SINE Alu -13 299 3 631 306 86 37 chr4 127762395 127762943 -74565404 + L1MC4a LINE L1 3846 4366 -1780 23 33 0 0 chr4 127763064 127763094 -74565253 + AT_rich Low_complexity Low_complexity 1 30 0 422 375 49 25 chr4 127763094 127763502 -74564845 + L1MC4a LINE L1 4565 4982 -1164 389 53 18 0 chr4 127763502 127763559 -74564788 + L1PA4 LINE L1 6095 6152 -3 25 51 0 0 chr4 127763583 127763622 -74564725 + AT_rich Low_complexity Low_complexity 1 39 0 574 313 70 33 chr4 127763826 127764465 -74563882 + L1MC4a LINE L1 5258 5920 -1888 996 163 36 66 chr4 127765045 127765265 -74563082 + AluJo SINE Alu 93 306 0 367 347 67 16 chr4 127765339 127765532 -74562815 - MIR3 SINE MIR -2 206 4 290 312 156 13 chr4 127765545 127765699 -74562648 + MIR SINE MIR 58 233 -29 300 209 0 35 chr4 127765841 127765956 -74562391 + GA-rich Low_complexity Low_complexity 1 111 0 8505 124 12 5 chr4 127766578 127767869 -74560478 + HSMAR2 DNA Mariner 2 1300 -2 866 306 94 3 chr4 127769224 127769597 -74558750 + LTR33A LTR ERVL 61 467 -56 1938 124 16 3 chr4 127769686 127769992 -74558355 - AluSx SINE Alu -2 310 1 2005 246 66 44 chr4 127770486 127771059 -74557288 + MLT1E LTR MaLR 1 586 -7 314 316 51 17 chr4 127771097 127771214 -74557133 - L2 LINE L2 -183 3089 2969 234 62 0 0 chr4 127771269 127771301 -74557046 + (GA)n Simple_repeat Simple_repeat 2 33 0 340 332 159 0 chr4 127772120 127772334 -74556013 - MIR SINE MIR -4 258 11 573 279 164 0 chr4 127772458 127772666 -74555681 + MIR SINE MIR 21 262 0 464 255 21 117 chr4 127773266 127773402 -74554945 + MIR3 SINE MIR 16 131 -77 1953 123 24 3 chr4 127773402 127773695 -74554652 + AluSx SINE Alu 1 299 -13 464 255 21 117 chr4 127773695 127773746 -74554601 + MIR3 SINE MIR 131 185 -23 220 300 38 25 chr4 127774334 127774414 -74553933 + MIR SINE MIR 79 159 -103 2298 146 6 14 chr4 127774505 127774867 -74553480 + MER1A DNA MER1_type 3 361 -168 24 77 0 0 chr4 127775104 127775156 -74553191 + AT_rich Low_complexity Low_complexity 1 52 0 22 56 0 0 chr4 127775582 127775618 -74552729 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr4 127775687 127775716 -74552631 + AT_rich Low_complexity Low_complexity 1 29 0 200 153 42 14 chr4 127775864 127775936 -74552411 + (TA)n Simple_repeat Simple_repeat 2 75 0 21 0 0 0 chr4 127775971 127775992 -74552355 + AT_rich Low_complexity Low_complexity 1 21 0 849 229 104 76 chr4 127777484 127778021 -74550326 - Charlie7 DNA MER1_type -75 2537 1986 227 200 25 62 chr4 127778014 127778094 -74550253 + Charlie7 DNA MER1_type 1962 2038 -574 * 259 194 90 0 chr4 127778149 127778216 -74550131 - Charlie7 DNA MER1_type -643 1969 1897 2207 77 14 20 chr4 127778234 127778531 -74549816 + AluY SINE Alu 1 295 -16 244 178 0 22 chr4 127778536 127778581 -74549766 - Charlie7 DNA MER1_type -787 1825 1782 2233 112 32 13 chr4 127778717 127779093 -74549254 - L1MA5A LINE L1 -5 6292 5910 464 204 142 57 chr4 127779093 127779269 -74549078 - Charlie7 DNA MER1_type -2421 191 1 1703 171 48 3 chr4 127779426 127779719 -74548628 - AluSx SINE Alu -5 307 2 328 281 0 0 chr4 127780099 127780188 -74548159 + MIR SINE MIR 120 208 -54 212 182 45 0 chr4 127780206 127780250 -74548097 + (TTG)n Simple_repeat Simple_repeat 2 47 0 632 237 133 28 chr4 127780386 127780597 -74547750 - MIR SINE MIR 0 262 30 2387 64 0 3 chr4 127782004 127782302 -74546045 - AluY SINE Alu -9 302 6 24 32 0 0 chr4 127784144 127784175 -74544172 + AT_rich Low_complexity Low_complexity 1 31 0 225 0 0 0 chr4 127784791 127784816 -74543531 + (TG)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr4 127785717 127785746 -74542601 + AT_rich Low_complexity Low_complexity 1 29 0 210 214 0 56 chr4 127786577 127786666 -74541681 + (TTTAA)n Simple_repeat Simple_repeat 4 87 0 396 0 0 0 chr4 127786798 127786842 -74541505 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr4 127787059 127787080 -74541267 + AT_rich Low_complexity Low_complexity 1 21 0 2392 175 40 17 chr4 127787305 127787826 -74540521 - Charlie1 DNA MER1_type -20 2741 2209 22 35 0 0 chr4 127787878 127787907 -74540440 + AT_rich Low_complexity Low_complexity 1 29 0 537 286 5 107 chr4 127788691 127788915 -74539432 + L2 LINE L2 3072 3272 0 820 209 26 84 chr4 127789637 127789720 -74538627 + L1MC5 LINE L1 7604 7690 -271 1788 111 62 24 chr4 127789720 127790008 -74538339 + AluSx SINE Alu 1 299 -13 820 209 26 84 chr4 127790008 127790269 -74538078 + L1MC5 LINE L1 7690 7928 -33 325 298 16 24 chr4 127790582 127790706 -74537641 + LTR16C LTR ERVL 285 407 -84 2069 107 78 23 chr4 127790818 127791163 -74537184 - THE1B LTR MaLR 0 364 1 267 31 0 0 chr4 127791301 127791333 -74537014 + (TG)n Simple_repeat Simple_repeat 1 32 0 1379 234 26 47 chr4 127791334 127791714 -74536633 - MLT1F LTR MaLR -170 372 1 200 167 21 0 chr4 127792159 127792207 -74536140 + (TAG)n Simple_repeat Simple_repeat 1 49 0 22 88 0 0 chr4 127793524 127793581 -74534766 + AT_rich Low_complexity Low_complexity 1 57 0 215 239 0 42 chr4 127793838 127793909 -74534438 + T-rich Low_complexity Low_complexity 2 69 0 216 0 0 0 chr4 127795612 127795636 -74532711 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 1997 108 0 40 chr4 127795636 127795933 -74532414 - AluSg SINE Alu -25 285 1 2990 261 30 36 chr4 127795933 127796908 -74531439 - L1MEc LINE L1 -5392 1004 36 1578 264 43 4 chr4 127796909 127797375 -74530972 - L1M4 LINE L1 -2293 3853 3370 373 271 57 14 chr4 127797422 127797562 -74530785 - L2 LINE L2 -1527 1787 1642 429 302 212 19 chr4 127798125 127798536 -74529811 - L2 LINE L2 -337 2977 2488 284 332 195 15 chr4 127798507 127798712 -74529635 + MIR SINE MIR 21 262 0 * 204 311 81 43 chr4 127798704 127798865 -74529482 + L2 LINE L2 2593 2759 -555 * 481 225 212 7 chr4 127798965 127799116 -74529231 - MER5A DNA MER1_type -1 188 7 246 324 9 46 chr4 127799186 127799294 -74529053 + L2 LINE L2 2945 3048 -224 24 0 0 0 chr4 127800022 127800046 -74528301 + AT_rich Low_complexity Low_complexity 1 24 0 1572 214 32 30 chr4 127802462 127802831 -74525516 - MLT1A2 LTR MaLR -4 370 1 1856 207 89 52 chr4 127802857 127803360 -74524987 - MLT1A2-int LTR MaLR -16 1719 1198 315 311 9 0 chr4 127803390 127803496 -74524851 - MLT1A2-int LTR MaLR -956 779 673 3264 214 54 14 chr4 127803604 127804313 -74524034 - MLT1A2-int LTR MaLR -629 742 6 4745 208 82 60 chr4 127804317 127804854 -74523493 + L1M4 LINE L1 2431 2955 -3191 342 0 0 0 chr4 127804854 127804892 -74523455 + (CA)n Simple_repeat Simple_repeat 2 39 0 4745 208 82 60 chr4 127804892 127804943 -74523404 + L1M4 LINE L1 2955 3003 -3143 1550 165 0 0 chr4 127804943 127805185 -74523162 - AluJb SINE Alu -70 242 1 4745 208 82 60 chr4 127805185 127806272 -74522075 + L1M4 LINE L1 3003 4143 -2003 684 323 58 9 chr4 127806273 127806499 -74521848 - MIR SINE MIR -19 243 7 21 0 0 0 chr4 127807737 127807758 -74520589 + AT_rich Low_complexity Low_complexity 1 21 0 405 141 0 0 chr4 127807807 127807878 -74520469 + L1MA3 LINE L1 6234 6304 -1 28 48 0 0 chr4 127808714 127808756 -74519591 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr4 127809197 127809233 -74519114 + AT_rich Low_complexity Low_complexity 1 36 0 7605 29 2 0 chr4 127809912 127811182 -74517165 - L1PA5 LINE L1 -1 6153 4883 692 209 175 10 chr4 127811407 127811613 -74516734 + HsTC2 DNA Tc2 1282 1697 -201 650 245 44 60 chr4 127811624 127811922 -74516425 + HsTC2 DNA Tc2 1591 1883 -15 2681 36 0 0 chr4 127812643 127812947 -74515400 - AluY SINE Alu -7 304 1 190 330 176 0 chr4 127814071 127814162 -74514185 - L2 LINE L2 -16 3297 3191 316 215 81 81 chr4 127814468 127814729 -74513618 - L1ME4a LINE L1 -209 5912 5652 23 0 0 0 chr4 127816357 127816380 -74511967 + AT_rich Low_complexity Low_complexity 1 23 0 221 0 0 33 chr4 127817035 127817065 -74511282 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr4 127817157 127817178 -74511169 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr4 127817918 127817953 -74510394 + AT_rich Low_complexity Low_complexity 1 35 0 1487 158 127 0 chr4 127818599 127818859 -74509488 + AluJb SINE Alu 1 293 -19 2295 107 0 0 chr4 127819116 127819415 -74508932 - AluSx SINE Alu -13 299 1 2190 108 39 28 chr4 127819618 127819978 -74508369 - THE1B LTR MaLR 0 364 1 11737 97 1 2 chr4 127819978 127821560 -74506787 - THE1B-int LTR MaLR 0 1580 1 2210 129 20 28 chr4 127821560 127821917 -74506430 - THE1B LTR MaLR -10 354 1 1169 230 47 77 chr4 127822992 127823292 -74505055 - MLT1A2 LTR MaLR 0 467 174 2175 92 7 7 chr4 127823292 127823587 -74504760 - AluSq SINE Alu -14 299 5 1169 230 47 77 chr4 127823587 127823757 -74504590 - MLT1A2 LTR MaLR -293 174 1 283 213 71 71 chr4 127823930 127824057 -74504290 - L1MC4 LINE L1 -2 8040 7914 2211 101 7 3 chr4 127824076 127824373 -74503974 + AluSp SINE Alu 1 298 -15 554 69 69 13 chr4 127824373 127824532 -74503815 + (TA)n Simple_repeat Simple_repeat 1 168 0 1898 264 75 16 chr4 127824555 127825316 -74503031 - L1MC4 LINE L1 -251 7791 6986 759 250 10 21 chr4 127825303 127825495 -74502852 - L1ME2 LINE L1 0 6164 5975 * 370 277 18 0 chr4 127825500 127825612 -74502735 - L1MC4a LINE L1 -884 6924 6811 319 347 46 19 chr4 127825766 127825982 -74502365 - L1M4 LINE L1 -1128 5018 4797 2416 113 0 3 chr4 127826366 127826720 -74501627 - L1PA16 LINE L1 -9 6157 5805 242 56 28 0 chr4 127827101 127827137 -74501210 + (TA)n Simple_repeat Simple_repeat 1 37 0 22694 33 0 0 chr4 127828083 127831633 -74496714 + L1PA4 LINE L1 2590 6147 -8 373 311 47 42 chr4 127832431 127832624 -74495723 - L2 LINE L2 0 3313 3120 2593 37 0 40 chr4 127832975 127833297 -74495050 - AluY SINE Alu -2 309 1 227 347 89 0 chr4 127834080 127834204 -74494143 + MLT1I LTR MaLR 37 171 -238 543 265 87 78 chr4 127835858 127836167 -74492180 + MLT1I LTR MaLR 98 409 0 23 0 0 0 chr4 127836315 127836338 -74492009 + AT_rich Low_complexity Low_complexity 1 23 0 473 308 83 21 chr4 127836519 127836746 -74491601 - MIR SINE MIR -2 260 20 22 0 0 0 chr4 127836970 127836992 -74491355 + AT_rich Low_complexity Low_complexity 1 22 0 260 229 76 19 chr4 127837306 127837411 -74490936 + MER103 DNA DNA 46 156 -10 482 298 66 30 chr4 127839256 127839357 -74488990 + MIR SINE MIR 50 146 -116 2101 143 0 0 chr4 127839357 127839665 -74488682 + AluSx SINE Alu 1 308 -4 482 298 66 30 chr4 127839665 127839761 -74488586 + MIR SINE MIR 146 254 -8 1909 156 16 35 chr4 127839789 127840160 -74488187 - THE1B LTR MaLR 0 364 1 11408 93 15 2 chr4 127840160 127841719 -74486628 - THE1B-int LTR MaLR 0 1580 1 1618 158 50 55 chr4 127841724 127842085 -74486262 - THE1B LTR MaLR -5 359 1 233 127 36 73 chr4 127842724 127842779 -74485568 - MIR SINE MIR -113 149 97 204 324 106 21 chr4 127842938 127843080 -74485267 + L3b LINE CR1 1216 1369 -214 3504 135 44 6 chr4 127843486 127844034 -74484313 + LTR1B LTR ERV1 1 569 -257 2406 101 30 15 chr4 127844034 127844370 -74483977 - THE1B LTR MaLR 0 364 24 766 169 16 20 chr4 127844373 127844537 -74483810 + LTR1B LTR ERV1 579 826 0 501 307 51 59 chr4 127844571 127844769 -74483578 + MIR SINE MIR 14 206 -56 253 258 61 22 chr4 127844873 127844978 -74483369 + MIR SINE MIR 68 177 -65 200 211 0 0 chr4 127846140 127846178 -74482169 - L2 LINE L2 -15 3298 3261 314 288 131 58 chr4 127846211 127846402 -74481945 - MIR SINE MIR -54 208 4 784 269 33 29 chr4 127847937 127848182 -74480165 + MIR SINE MIR 1 246 -16 478 340 77 10 chr4 127848187 127848396 -74479951 - MIR SINE MIR -1 261 39 23 0 0 0 chr4 127848492 127848515 -74479832 + AT_rich Low_complexity Low_complexity 1 23 0 223 189 0 0 chr4 127848522 127848559 -74479788 + L2 LINE L2 3220 3256 -16 810 294 32 12 chr4 127850889 127851141 -74477206 + MIR SINE MIR 1 257 -5 22 35 0 0 chr4 127851313 127851342 -74477005 + AT_rich Low_complexity Low_complexity 1 29 0 225 0 0 0 chr4 127851416 127851441 -74476906 + (TG)n Simple_repeat Simple_repeat 2 26 0 27 96 0 0 chr4 127851714 127851797 -74476550 + AT_rich Low_complexity Low_complexity 1 83 0 2105 120 32 0 chr4 127851799 127852083 -74476264 + AluSx SINE Alu 2 294 -18 26 0 0 0 chr4 127853457 127853483 -74474864 + AT_rich Low_complexity Low_complexity 1 26 0 29 0 0 0 chr4 127853552 127853581 -74474766 + AT_rich Low_complexity Low_complexity 1 29 0 192 370 59 15 chr4 127855310 127855445 -74472902 - L3b LINE CR1 -119 1464 1324 21 0 0 0 chr4 127855553 127855574 -74472773 + AT_rich Low_complexity Low_complexity 1 21 0 622 161 9 0 chr4 127856042 127856154 -74472193 - Charlie1b DNA MER1_type -1 522 410 1936 146 10 0 chr4 127856157 127856445 -74471902 + AluJb SINE Alu 6 296 -16 22 0 0 0 chr4 127856465 127856487 -74471860 + AT_rich Low_complexity Low_complexity 1 22 0 1440 172 51 104 chr4 127856487 127856691 -74471656 - Charlie1b DNA MER1_type -2285 476 263 2035 121 3 10 chr4 127856691 127856980 -74471367 + AluSx SINE Alu 3 289 -23 1440 172 51 104 chr4 127856980 127857246 -74471101 - Charlie1b DNA MER1_type -2498 263 31 613 311 35 0 chr4 127857505 127857733 -74470614 + MIR SINE MIR 10 245 -17 249 33 0 0 chr4 127858118 127858148 -74470199 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 375 337 91 32 chr4 127858406 127858593 -74469754 + MIR3 SINE MIR 8 205 -3 182 133 0 22 chr4 127860461 127860506 -74467841 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 332 75 0 19 chr4 127861136 127861189 -74467158 + (GA)n Simple_repeat Simple_repeat 1 52 0 1705 234 59 77 chr4 127863335 127863398 -74464949 + MLT1F1 LTR MaLR 1 64 -503 2388 103 0 0 chr4 127863398 127863710 -74464637 + AluSx SINE Alu 1 312 0 1705 234 59 77 chr4 127863710 127864218 -74464129 + MLT1F1 LTR MaLR 64 562 -5 4331 117 49 4 chr4 127864255 127864974 -74463373 - Tigger3(Golem) DNA MER2_type -1 3028 2278 514 217 19 0 chr4 127864966 127865072 -74463275 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 235 234 26 39 chr4 127865488 127865565 -74462782 + MLT1H LTR MaLR 99 174 -375 400 240 31 47 chr4 127865743 127865872 -74462475 + MLT1H LTR MaLR 421 547 -2 225 378 49 7 chr4 127866107 127866250 -74462097 - MIR SINE MIR -111 151 3 839 132 63 58 chr4 127866546 127866720 -74461627 + MLT1B LTR MaLR 1 175 -215 203 156 0 0 chr4 127866736 127866768 -74461579 + CT-rich Low_complexity Low_complexity 2 33 0 465 286 0 0 chr4 127866777 127866889 -74461458 + MLT1B LTR MaLR 194 305 -85 512 263 147 28 chr4 127916924 127917251 -74411096 - L1M4 LINE L1 -1845 4301 3936 628 283 83 5 chr4 127917655 127917860 -74410487 + MIR SINE MIR 5 225 -37 1123 153 20 0 chr4 127917861 127918064 -74410283 + L1PA16 LINE L1 5959 6165 -1 1938 146 0 0 chr4 127918102 127918377 -74409970 + AluSx SINE Alu 1 275 -37 913 174 24 6 chr4 127918483 127918650 -74409697 - MER1B DNA MER1_type -126 171 2 274 264 33 11 chr4 127918685 127918776 -74409571 - MLT1K LTR MaLR -115 473 381 1335 53 0 0 chr4 127919117 127919286 -74409061 - L1PA2 LINE L1 0 6155 5987 892 20 0 0 chr4 127919286 127919388 -74408959 + L1PA2 LINE L1 5784 5885 -270 8739 193 49 9 chr4 127919980 127921282 -74407065 + L1M1 LINE L1 1973 3222 -4343 2036 131 3 0 chr4 127921282 127921619 -74406728 + AluSx SINE Alu 1 338 0 8739 193 49 9 chr4 127921619 127923045 -74405302 + L1M1 LINE L1 3222 4814 -2751 21 0 0 0 chr4 127923367 127923388 -74404959 + AT_rich Low_complexity Low_complexity 1 21 0 280 0 50 0 chr4 127923885 127923925 -74404422 + (GA)n Simple_repeat Simple_repeat 2 43 0 21 57 0 0 chr4 127924593 127924628 -74403719 + AT_rich Low_complexity Low_complexity 1 35 0 1223 231 50 58 chr4 127925591 127925990 -74402357 - MSTD LTR MaLR 0 396 1 22 35 0 0 chr4 127926040 127926069 -74402278 + AT_rich Low_complexity Low_complexity 1 29 0 515 214 245 65 chr4 127926316 127926606 -74401741 - L1ME3A LINE L1 -219 5951 5610 24 32 0 0 chr4 127926773 127926804 -74401543 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr4 127927048 127927077 -74401270 + AT_rich Low_complexity Low_complexity 1 29 0 194 0 39 0 chr4 127927703 127927729 -74400618 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 371 255 104 0 chr4 127927752 127927858 -74400489 + L1ME1 LINE L1 5487 5603 -518 495 265 65 39 chr4 127928210 127928440 -74399907 + L1ME1 LINE L1 5913 6148 -18 1974 137 142 11 chr4 127928440 127928813 -74399534 + MSTA LTR MaLR 3 424 -4 458 182 78 78 chr4 127928813 127928849 -74399498 + L1MA10 LINE L1 6297 6332 -2 * 898 266 18 5 chr4 127928845 127929063 -74399284 + L1ME LINE L1 5467 5687 -479 26 0 0 0 chr4 127929078 127929104 -74399243 + AT_rich Low_complexity Low_complexity 1 26 0 1853 153 0 7 chr4 127929104 127929391 -74398956 - AluSx SINE Alu -25 287 3 848 333 107 40 chr4 127929407 127930488 -74397859 + L2 LINE L2 1931 3069 -203 571 294 82 10 chr4 127932439 127932633 -74395714 + MIR SINE MIR 51 258 -4 1326 203 3 64 chr4 127932692 127932988 -74395359 - MLT2D LTR ERVL 0 414 137 23 0 0 0 chr4 127933859 127933882 -74394465 + AT_rich Low_complexity Low_complexity 1 23 0 276 359 15 8 chr4 127934741 127934872 -74393475 - L2 LINE L2 0 3313 3182 1785 254 66 7 chr4 127934969 127935548 -74392799 + MLT1E3 LTR MaLR 3 624 0 1164 126 126 59 chr4 127936236 127936475 -74391872 - AluSg SINE Alu -45 265 11 383 264 16 50 chr4 127937508 127937629 -74390718 - L2 LINE L2 -15 3257 3141 180 234 0 0 chr4 127938703 127938750 -74389597 + (CA)n Simple_repeat Simple_repeat 1 47 0 342 350 8 8 chr4 127939433 127939550 -74388797 + L2 LINE L2 3175 3291 -22 1140 265 40 19 chr4 127940597 127940938 -74387409 - MLT1I LTR MaLR -20 389 57 403 320 146 0 chr4 127941071 127941249 -74387098 - MIR SINE MIR -1 261 58 1159 71 0 0 chr4 127941780 127941920 -74386427 + AluSg SINE Alu 1 140 -170 752 327 19 4 chr4 127942182 127942439 -74385908 + MIR SINE MIR 2 262 0 1996 132 0 0 chr4 127943009 127943314 -74385033 - AluSg SINE Alu 0 305 1 240 260 0 14 chr4 127943314 127943387 -74384960 - MER5A DNA MER1_type -114 75 4 241 330 68 0 chr4 127943446 127943534 -74384813 + MIR SINE MIR 58 151 -111 332 281 43 33 chr4 127943811 127944048 -74384299 - L1P LINE L1 -1107 5039 4802 2094 123 3 0 chr4 127944201 127944501 -74383846 - AluSx SINE Alu -7 305 5 4673 68 18 3 chr4 127947543 127948560 -74379787 - MER11A LTR ERVK 0 1266 1 333 0 0 0 chr4 127950558 127950595 -74377752 + (CA)n Simple_repeat Simple_repeat 2 38 0 192 206 0 0 chr4 127950650 127950684 -74377663 + MIR SINE MIR 228 261 -1 1868 172 5 52 chr4 127951591 127951974 -74376373 + MLT1A1 LTR MaLR 1 365 0 282 280 43 11 chr4 127951976 127952069 -74376278 + MIR SINE MIR 3 98 -164 747 214 209 0 chr4 127952137 127952357 -74375990 - L1ME3A LINE L1 -4 6166 5901 1217 205 28 0 chr4 127952357 127952572 -74375775 + Tigger5 DNA MER2_type 1 221 -2102 * 2763 170 14 4 chr4 127952569 127953052 -74375295 + Tigger5 DNA MER2_type 1835 2322 -1 1515 270 59 13 chr4 127953053 127953579 -74374768 - L1ME3A LINE L1 -268 5902 5353 4073 21 0 0 chr4 127953583 127954057 -74374290 - L1PA2 LINE L1 -2 6153 5680 21 0 0 0 chr4 127955539 127955560 -74372787 + AT_rich Low_complexity Low_complexity 1 21 0 551 316 84 30 chr4 127957208 127957578 -74370769 - MLT1I LTR MaLR -19 390 1 460 331 87 25 chr4 127959104 127959472 -74368875 + L1M4 LINE L1 4562 4952 -1194 208 364 30 10 chr4 127959896 127959995 -74368352 - L2 LINE L2 -325 2988 2888 21 0 0 0 chr4 127960005 127960026 -74368321 + AT_rich Low_complexity Low_complexity 1 21 0 206 413 12 6 chr4 127960274 127960434 -74367913 + L2 LINE L2 2813 2973 -340 1226 240 179 58 chr4 127960640 127961318 -74367029 - L1MC4 LINE L1 -3 8039 7280 1114 148 36 4 chr4 127961335 127961558 -74366789 - MER33 DNA MER1_type -260 64 1 41408 38 21 3 chr4 127961952 127967228 -74361119 - L1P LINE L1 -757 5389 2 259 285 36 36 chr4 127967293 127967458 -74360889 - L1P LINE L1 -852 5294 5130 311 180 20 120 chr4 127967480 127967580 -74360767 + L1MC4 LINE L1 6614 6703 -1339 468 281 79 22 chr4 127967697 127967764 -74360583 - L1 LINE L1 -1225 4921 4859 1751 260 85 29 chr4 127967764 127968387 -74359960 - MLT2F LTR ERVL -2 661 4 468 281 79 22 chr4 127968387 127968602 -74359745 - L1 LINE L1 -1287 4859 4624 297 51 0 0 chr4 127968731 127968770 -74359577 + (T)n Simple_repeat Simple_repeat 1 39 0 1807 37 0 0 chr4 127968951 127969165 -74359182 - L1PA3 LINE L1 -3 6152 5939 1078 215 11 18 chr4 127969165 127969444 -74358903 + L1 LINE L1 2738 3014 -3132 482 283 73 93 chr4 127969517 127969902 -74358445 + HAL1 LINE L1 529 905 -1602 390 262 12 83 chr4 127969981 127970149 -74358198 + HAL1 LINE L1 1058 1213 -1294 213 149 0 21 chr4 127970150 127970197 -74358150 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 913 255 68 13 chr4 127970265 127970500 -74357847 + MER74A LTR ERVL 54 301 -257 3583 168 7 2 chr4 127970508 127971097 -74357250 - LTR39 LTR ERV1 -7 776 185 * 4190 138 7 61 chr4 127971096 127971851 -74356496 - MER50 LTR ERV1 -20 714 1 1078 147 11 26 chr4 127971851 127972041 -74356306 - LTR39 LTR ERV1 -596 187 1 344 246 51 36 chr4 127972041 127972178 -74356169 + MER74A LTR ERVL 299 437 -121 1442 264 84 64 chr4 127972270 127973302 -74355045 + HAL1 LINE L1 1209 2261 -246 1358 264 107 55 chr4 127973349 127974433 -74353914 - L2 LINE L2 0 3313 2066 2352 82 3 10 chr4 127974741 127975046 -74353301 + AluY SINE Alu 1 303 -8 282 244 51 0 chr4 127975125 127975203 -74353144 - L2 LINE L2 -1267 2047 1966 22 56 0 0 chr4 127976159 127976195 -74352152 + AT_rich Low_complexity Low_complexity 1 36 0 196 377 13 0 chr4 127976220 127976297 -74352050 + L3b LINE CR1 1395 1472 -111 21 71 0 0 chr4 127976922 127976964 -74351383 + AT_rich Low_complexity Low_complexity 1 42 0 42 36 0 0 chr4 127977126 127977182 -74351165 + AT_rich Low_complexity Low_complexity 1 56 0 510 188 0 0 chr4 127978298 127978399 -74349948 + GA-rich Low_complexity Low_complexity 4 104 0 336 350 21 25 chr4 127979079 127979258 -74349089 + MER5A DNA MER1_type 2 188 -1 28 0 0 0 chr4 127979680 127979708 -74348639 + AT_rich Low_complexity Low_complexity 1 28 0 548 204 122 122 chr4 127979918 127980321 -74348026 - MER57A LTR ERV1 0 403 1 213 94 0 0 chr4 127980511 127980543 -74347804 + (TG)n Simple_repeat Simple_repeat 1 32 0 342 61 0 0 chr4 127980543 127980592 -74347755 + (GA)n Simple_repeat Simple_repeat 2 50 0 249 108 0 0 chr4 127980918 127980955 -74347392 + (CA)n Simple_repeat Simple_repeat 2 38 0 219 206 27 110 chr4 127981405 127981478 -74346869 + L2 LINE L2 1237 1303 -2011 1325 283 138 17 chr4 127981481 127982178 -74346169 - L2 LINE L2 -80 3233 2430 1157 278 108 25 chr4 127982178 127982736 -74345611 + L2 LINE L2 1333 1936 -1378 8295 130 24 8 chr4 127982852 127985277 -74343070 + L1MA3 LINE L1 3840 6302 -3 21 0 0 0 chr4 127985277 127985298 -74343049 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr4 127985832 127985864 -74342483 + AT_rich Low_complexity Low_complexity 1 32 0 186 372 105 0 chr4 127985882 127985968 -74342379 - L2 LINE L2 -2 3270 3176 396 295 134 0 chr4 127987059 127987238 -74341109 - MIR SINE MIR -46 216 15 191 182 0 0 chr4 127987370 127987403 -74340944 + L2 LINE L2 2440 2472 -842 411 283 18 42 chr4 127987512 127987678 -74340669 + MLT1H LTR MaLR 203 364 -185 235 282 13 13 chr4 127987732 127987810 -74340537 + MLT1H LTR MaLR 454 531 -18 335 353 128 19 chr4 127987943 127988311 -74340036 + L2 LINE L2 2570 2977 -337 1416 195 65 109 chr4 127988491 127988564 -74339783 - MLT1C LTR MaLR -2 465 390 4820 120 9 1 chr4 127988564 127989304 -74339043 + L1PA13 LINE L1 5418 6163 0 1416 195 65 109 chr4 127989304 127989707 -74338640 - MLT1C LTR MaLR -77 390 10 432 338 137 0 chr4 127990752 127990968 -74337379 + MIR SINE MIR 10 262 0 37 0 0 0 chr4 127991159 127991196 -74337151 + AT_rich Low_complexity Low_complexity 1 37 0 438 509 85 13 chr4 127991451 127991769 -74336578 - MER58B DNA MER1_type 0 341 1 2238 101 0 14 chr4 127993129 127993426 -74334921 + AluSx SINE Alu 3 295 -17 1914 126 0 0 chr4 127994257 127994520 -74333827 - AluY SINE Alu -23 288 26 181 217 152 0 chr4 127994965 127995011 -74333336 + L3 LINE CR1 1044 1096 -481 1867 192 50 101 chr4 127996404 127996987 -74331360 + MLT2B3 LTR ERVL 1 553 -1 228 130 0 43 chr4 127996987 127997027 -74331320 + MLT2B3 LTR ERVL 517 554 0 17435 179 87 14 chr4 127997479 128001351 -74326996 + L1M1 LINE L1 16 4169 -3396 279 54 0 0 chr4 128001351 128001388 -74326959 + (T)n Simple_repeat Simple_repeat 1 37 0 1492 85 0 27 chr4 128001562 128001785 -74326562 - L1PA3 LINE L1 0 6155 5939 392 331 159 21 chr4 128002049 128002421 -74325926 - L1M4 LINE L1 -1261 4885 4463 306 224 138 0 chr4 128002904 128003020 -74325327 + L1MEd LINE L1 709 840 -5279 463 257 47 29 chr4 128003114 128003285 -74325062 - L2 LINE L2 -913 2401 2228 243 217 67 0 chr4 128003502 128003562 -74324785 + MLT1L LTR MaLR 342 405 -210 280 315 74 44 chr4 128003940 128004305 -74324042 + L1M4 LINE L1 4765 5140 -1006 4432 134 15 14 chr4 128004974 128006572 -74321775 - L1PA16 LINE L1 -9 6157 4496 2284 126 0 42 chr4 128006572 128006894 -74321453 - THE1B LTR MaLR 0 364 58 2112 102 0 0 chr4 128006894 128007199 -74321148 - AluY SINE Alu 0 305 1 2284 126 0 42 chr4 128007199 128007255 -74321092 - THE1B LTR MaLR -306 58 1 4432 134 15 14 chr4 128007255 128007333 -74321014 - L1PA16 LINE L1 -1670 4496 4420 1914 136 107 9 chr4 128007336 128007681 -74320666 + MSTA LTR MaLR 19 397 -31 5212 195 23 96 chr4 128007745 128008537 -74319810 - L1M4 LINE L1 -1707 4439 3591 2788 86 17 66 chr4 128008537 128009004 -74319343 + MLT2A1 LTR ERVL 1 444 0 5212 195 23 96 chr4 128009004 128009084 -74319263 - L1M4 LINE L1 -2555 3591 3507 1677 196 7 0 chr4 128009084 128009419 -74318928 - AluJb SINE Alu 0 312 1 5212 195 23 96 chr4 128009419 128010255 -74318092 - L1M4 LINE L1 -2639 3507 2855 2682 224 70 70 chr4 128011731 128012895 -74315452 + L1MDa LINE L1 1001 2165 -4375 250 228 119 50 chr4 128012887 128012963 -74315384 + L1ME1 LINE L1 5834 5920 -246 * 2186 132 3 0 chr4 128012963 128013274 -74315073 - AluSx SINE Alu 0 312 1 250 228 119 50 chr4 128013274 128013298 -74315049 + L1ME1 LINE L1 5920 5941 -225 227 330 81 54 chr4 128013300 128013558 -74314789 + L2 LINE L2 3026 3290 -23 357 24 0 0 chr4 128013560 128013602 -74314745 + (TC)n Simple_repeat Simple_repeat 2 43 0 243 0 0 0 chr4 128013601 128013628 -74314719 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 1958 150 0 7 chr4 128013630 128013930 -74314417 - AluSx SINE Alu -14 298 1 1636 212 13 28 chr4 128014027 128014423 -74313924 - MLT1B LTR MaLR 0 390 1 1144 191 30 109 chr4 128014428 128014821 -74313526 - MLT1A1 LTR MaLR 0 365 4 664 325 45 8 chr4 128014824 128015067 -74313280 - MIR SINE MIR -4 258 7 181 233 123 14 chr4 128015342 128015415 -74312932 - L2 LINE L2 -1099 2215 2135 26 50 0 0 chr4 128016025 128016065 -74312282 + AT_rich Low_complexity Low_complexity 1 40 0 425 273 25 0 chr4 128017218 128017339 -74311008 + L2 LINE L2 2447 2570 -744 538 236 19 176 chr4 128017428 128017895 -74310452 + L2 LINE L2 2920 3313 0 2146 99 20 0 chr4 128018300 128018603 -74309744 - AluSp SINE Alu -4 309 1 235 279 51 0 chr4 128018988 128019067 -74309280 + MLT1J2 LTR MaLR 353 435 -15 2070 122 10 0 chr4 128019246 128019550 -74308797 - AluSq SINE Alu -4 309 3 192 77 0 0 chr4 128019935 128019961 -74308386 + (A)n Simple_repeat Simple_repeat 1 26 0 2256 47 44 3 chr4 128019961 128020259 -74308088 + AluY SINE Alu 1 310 -1 1565 125 23 93 chr4 128020446 128020791 -74307556 + L1MA2 LINE L1 5984 6304 0 560 152 19 9 chr4 128020841 128020946 -74307401 - L1M2 LINE L1 -489 5811 5706 226 193 35 18 chr4 128020949 128021023 -74307324 + CT-rich Low_complexity Low_complexity 1 75 0 1929 149 18 21 chr4 128023647 128023982 -74304365 + MER1B DNA MER1_type 4 337 0 410 286 8 32 chr4 128027071 128027197 -74301150 - L2 LINE L2 0 3313 3191 356 286 101 21 chr4 128027341 128027530 -74300817 - L1ME3A LINE L1 -225 5928 5725 233 335 43 12 chr4 128027528 128027692 -74300655 - L1ME3A LINE L1 -632 5513 5345 * 363 247 42 77 chr4 128027706 128028018 -74300329 - L1ME3A LINE L1 -816 5313 5013 359 283 235 30 chr4 128028115 128028685 -74299662 - L1ME3A LINE L1 -1952 4177 3491 514 301 75 61 chr4 128028685 128028893 -74299454 - L1ME3A LINE L1 -5075 1044 840 372 127 28 0 chr4 128028893 128028964 -74299383 - L1PA16 LINE L1 -1 6165 6093 514 301 75 61 chr4 128028964 128029197 -74299150 - L1ME3A LINE L1 -5279 840 597 640 157 0 0 chr4 128030208 128030310 -74298037 + AluJo SINE Alu 32 133 -179 384 77 0 0 chr4 128030416 128030468 -74297879 + (TG)n Simple_repeat Simple_repeat 1 52 0 356 222 83 46 chr4 128030551 128030659 -74297688 + MIR SINE MIR 76 187 -75 21 57 0 0 chr4 128030885 128030920 -74297427 + AT_rich Low_complexity Low_complexity 1 35 0 1170 260 62 0 chr4 128031000 128031358 -74296989 - L1ME3A LINE L1 -119 6051 5672 345 179 71 0 chr4 128031405 128031489 -74296858 + L1MC4 LINE L1 6614 6703 -1339 259 276 46 0 chr4 128031508 128031595 -74296752 - L1ME3A LINE L1 -567 5603 5513 245 265 48 60 chr4 128031595 128031678 -74296669 + L2 LINE L2 3171 3252 -61 469 357 116 24 chr4 128032043 128032458 -74295889 - L2 LINE L2 -4 3309 2857 1047 157 0 12 chr4 128032527 128032693 -74295654 + AluJo SINE Alu 133 296 -16 387 342 49 23 chr4 128032775 128033120 -74295227 - L2 LINE L2 -589 2725 2372 181 328 69 52 chr4 128033730 128033904 -74294443 - L2 LINE L2 -418 2896 2720 24 0 0 0 chr4 128034178 128034202 -74294145 + AT_rich Low_complexity Low_complexity 1 24 0 200 216 0 0 chr4 128034244 128034281 -74294066 + T-rich Low_complexity Low_complexity 2 38 0 195 42 0 0 chr4 128036448 128036472 -74291875 + (TG)n Simple_repeat Simple_repeat 1 24 0 327 315 37 70 chr4 128037419 128037746 -74290601 - HAL1 LINE L1 -366 2141 1826 343 229 12 0 chr4 128037768 128037851 -74290496 - HAL1 LINE L1 -813 1694 1611 519 238 63 148 chr4 128037893 128038272 -74290075 - L2 LINE L2 -18 3295 2949 257 204 51 112 chr4 128038367 128038433 -74289914 - HAL1 LINE L1 -898 1609 1549 2488 71 0 0 chr4 128038433 128038742 -74289605 + AluY SINE Alu 2 310 -1 257 204 51 112 chr4 128038742 128038773 -74289574 - HAL1 LINE L1 -958 1549 1518 2425 93 0 3 chr4 128039032 128039343 -74289004 + AluY SINE Alu 1 310 -1 1819 234 85 37 chr4 128039411 128040431 -74287916 - L1ME1 LINE L1 -95 6071 4997 935 174 25 55 chr4 128040438 128040639 -74287708 - MER1B DNA MER1_type 0 339 145 851 208 6 0 chr4 128041069 128041237 -74287110 + L1PB4 LINE L1 5983 6151 -5 355 292 77 71 chr4 128041352 128041527 -74286820 - L1ME LINE L1 -490 5631 5458 2408 68 0 3 chr4 128041527 128041834 -74286513 + AluY SINE Alu 1 306 -5 355 292 77 71 chr4 128041834 128042024 -74286323 - L1ME LINE L1 -663 5458 5264 425 215 208 14 chr4 128042345 128042489 -74285858 + MIR SINE MIR 84 255 -7 270 56 0 0 chr4 128044811 128044847 -74283500 + (GA)n Simple_repeat Simple_repeat 2 37 0 623 275 142 5 chr4 128045283 128045494 -74282853 + MIR SINE MIR 23 262 0 330 91 0 0 chr4 128046307 128046362 -74281985 + (CA)n Simple_repeat Simple_repeat 2 56 0 212 311 0 0 chr4 128046734 128046795 -74281552 - MIR SINE MIR 0 262 202 276 250 0 0 chr4 128046797 128046865 -74281482 - LTR40a LTR ERVL -451 68 1 295 312 25 6 chr4 128047049 128047206 -74281141 + HAL1b LINE L1 1188 1347 -1 278 280 24 64 chr4 128048231 128048356 -74279991 - L2 LINE L2 0 3272 3153 1751 211 32 56 chr4 128048665 128049219 -74279128 + MER34 LTR ERV1 2 542 0 21 36 0 0 chr4 128049388 128049416 -74278931 + AT_rich Low_complexity Low_complexity 1 28 0 193 188 78 78 chr4 128050045 128050109 -74278238 + L2 LINE L2 3181 3244 -69 234 0 0 0 chr4 128050109 128050135 -74278212 + (CA)n Simple_repeat Simple_repeat 2 27 0 325 369 67 5 chr4 128050370 128050565 -74277782 + MIR SINE MIR 50 256 -6 357 316 115 54 chr4 128050871 128051439 -74276908 + L2 LINE L2 2507 3186 -86 231 169 48 12 chr4 128051877 128051960 -74276387 + (TA)n Simple_repeat Simple_repeat 2 87 0 28 0 0 0 chr4 128055044 128055072 -74273275 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr4 128055238 128055272 -74273075 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr4 128055437 128055464 -74272883 + AT_rich Low_complexity Low_complexity 1 27 0 186 103 0 0 chr4 128056392 128056421 -74271926 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2053 131 3 0 chr4 128056458 128056756 -74271591 + AluSx SINE Alu 1 299 -13 414 0 0 0 chr4 128057258 128057304 -74271043 + (CA)n Simple_repeat Simple_repeat 2 47 0 330 256 66 33 chr4 128060594 128060715 -74267632 - MER5A DNA MER1_type -56 133 9 260 228 18 0 chr4 128062015 128062072 -74266275 + MLT1J LTR MaLR 110 167 -344 22 0 0 0 chr4 128062856 128062878 -74265469 + AT_rich Low_complexity Low_complexity 1 22 0 752 160 158 156 chr4 128063290 128063721 -74264626 + MSTB1 LTR MaLR 1 432 0 2000 196 15 25 chr4 128064070 128064472 -74263875 - MER89 LTR ERV1 0 559 162 1396 171 27 44 chr4 128064476 128064774 -74263573 + L1MB5 LINE L1 5869 6161 -13 2235 182 38 69 chr4 128065159 128065878 -74262469 + L1MA9 LINE L1 5622 6277 -24 25 31 0 0 chr4 128065885 128065917 -74262430 + AT_rich Low_complexity Low_complexity 1 32 0 343 281 55 37 chr4 128066978 128067195 -74261152 + L1 LINE L1 3113 3333 -2813 241 278 0 0 chr4 128067231 128067285 -74261062 - MIR SINE MIR -155 107 54 285 285 23 0 chr4 128067755 128067885 -74260462 + L1 LINE L1 3660 3792 -2354 23 97 0 0 chr4 128068193 128068265 -74260082 + AT_rich Low_complexity Low_complexity 1 72 0 369 217 123 0 chr4 128068452 128068558 -74259789 - L2 LINE L2 -36 3277 3159 231 286 57 29 chr4 128068678 128068818 -74259529 + L1ME4a LINE L1 5955 6098 -23 22 0 0 0 chr4 128068873 128068895 -74259452 + AT_rich Low_complexity Low_complexity 1 22 0 219 267 40 140 chr4 128069762 128069912 -74258435 - L2 LINE L2 0 3272 3138 829 262 11 0 chr4 128070435 128070626 -74257721 + MER58A DNA MER1_type 27 219 -5 1067 280 97 35 chr4 128070683 128071222 -74257125 - MLT1F1 LTR MaLR 0 567 1 322 317 68 34 chr4 128071268 128071473 -74256874 - L2 LINE L2 -404 2910 2699 2879 302 165 20 chr4 128072401 128073945 -74254402 + L2 LINE L2 872 2711 -603 784 286 19 8 chr4 128073945 128074204 -74254143 + MIR SINE MIR 1 262 0 2879 302 165 20 chr4 128074204 128074443 -74253904 + L2 LINE L2 2711 2914 -400 2384 76 0 25 chr4 128074536 128074853 -74253494 - AluSg SINE Alu -1 309 1 798 310 107 30 chr4 128074886 128075480 -74252867 + L2 LINE L2 2665 3311 -2 1671 262 133 57 chr4 128075494 128076108 -74252239 + HAL1 LINE L1 1011 1577 -930 1990 150 0 7 chr4 128076108 128076587 -74251760 - AluSx SINE Alu 0 312 1 1671 262 133 57 chr4 128076587 128077103 -74251244 + HAL1 LINE L1 1577 2227 -280 221 293 0 0 chr4 128077103 128077161 -74251186 + (TG)n Simple_repeat Simple_repeat 1 58 0 283 234 92 118 chr4 128077168 128077472 -74250875 + HAL1 LINE L1 2212 2507 0 323 304 9 17 chr4 128077708 128077823 -74250524 - MIR SINE MIR -50 212 99 21 0 0 0 chr4 128078091 128078112 -74250235 + AT_rich Low_complexity Low_complexity 1 21 0 401 305 86 43 chr4 128080083 128080270 -74248077 + MIR SINE MIR 59 253 -9 186 43 0 0 chr4 128081548 128081571 -74246776 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 23 54 0 0 chr4 128081756 128081793 -74246554 + AT_rich Low_complexity Low_complexity 1 37 0 280 318 0 24 chr4 128084802 128084887 -74243460 + MIR SINE MIR 72 154 -108 1454 72 19 14 chr4 128088226 128088433 -74239914 + AluY SINE Alu 104 311 0 460 221 18 9 chr4 128088995 128089108 -74239239 + L1MC4 LINE L1 7929 8042 0 483 233 66 57 chr4 128089120 128089435 -74238912 + Charlie2 DNA MER1_type 2246 2586 -276 300 222 0 0 chr4 128089840 128089912 -74238435 - L1MA6 LINE L1 0 6300 6229 1978 158 36 25 chr4 128090943 128091303 -74237044 + THE1B LTR MaLR 1 364 0 10875 101 19 2 chr4 128091303 128092857 -74235490 + THE1B-int LTR MaLR 1 1580 0 2101 144 33 28 chr4 128092857 128093219 -74235128 + THE1B LTR MaLR 1 364 0 870 309 29 0 chr4 128093602 128093848 -74234499 - MIR SINE MIR 0 262 10 25 31 0 0 chr4 128094239 128094271 -74234076 + AT_rich Low_complexity Low_complexity 1 32 0 2468 78 0 0 chr4 128094911 128095219 -74233128 + AluY SINE Alu 1 308 -3 1911 133 0 43 chr4 128096897 128097199 -74231148 + AluSx SINE Alu 1 289 -23 418 311 30 18 chr4 128097275 128097442 -74230905 + L2 LINE L2 3011 3179 -134 524 277 117 26 chr4 128097445 128097676 -74230671 - MIR SINE MIR 0 262 11 413 298 7 57 chr4 128097645 128097786 -74230561 + L2 LINE L2 3180 3313 0 * 2278 110 0 0 chr4 128098896 128099206 -74229141 + AluSq SINE Alu 1 310 -3 3933 180 42 20 chr4 128099361 128102132 -74226215 - L1MA9 LINE L1 0 6312 3392 252 307 31 39 chr4 128102134 128102261 -74226086 - MIR SINE MIR -121 141 16 283 343 58 0 chr4 128102407 128102544 -74225803 - L2 LINE L2 0 3313 3169 231 302 0 70 chr4 128102960 128103001 -74225346 + MIR SINE MIR 72 105 -157 2664 89 17 8 chr4 128103001 128103362 -74224985 - THE1B LTR MaLR 0 364 1 231 302 0 70 chr4 128103362 128103406 -74224941 + MIR SINE MIR 105 151 -111 191 111 0 28 chr4 128103410 128103446 -74224901 + (GAA)n Simple_repeat Simple_repeat 2 36 0 2258 123 0 0 chr4 128103523 128103832 -74224515 + AluSg SINE Alu 1 309 -1 473 289 198 0 chr4 128105926 128106123 -74222224 + MIR SINE MIR 2 237 -25 289 295 27 27 chr4 128107409 128107521 -74220826 + MIR SINE MIR 2 113 -149 651 317 159 19 chr4 128107608 128108024 -74220323 - L2 LINE L2 0 3313 2840 317 294 124 23 chr4 128108044 128108262 -74220085 + MIR SINE MIR 23 262 0 234 0 0 0 chr4 128108405 128108431 -74219916 + (A)n Simple_repeat Simple_repeat 1 26 0 1033 223 0 0 chr4 128109496 128109702 -74218645 - MLT1B LTR MaLR -6 384 179 420 285 102 0 chr4 128109966 128110103 -74218244 - MIR SINE MIR -110 152 2 379 303 48 7 chr4 128111155 128111300 -74217047 + MIR SINE MIR 32 182 -80 789 121 0 0 chr4 128111940 128112064 -74216283 + (GAA)n Simple_repeat Simple_repeat 1 124 0 2736 164 14 4 chr4 128112493 128112976 -74215371 - Tigger5 DNA MER2_type -5 2318 1831 978 208 91 0 chr4 128112976 128113173 -74215174 - Tigger5 DNA MER2_type -2108 215 1 282 95 0 0 chr4 128114003 128114045 -74214302 + (TG)n Simple_repeat Simple_repeat 2 43 0 418 295 66 6 chr4 128114971 128115137 -74213210 - MIR SINE MIR -13 249 74 23 0 0 0 chr4 128115288 128115311 -74213036 + AT_rich Low_complexity Low_complexity 1 23 0 222 348 36 18 chr4 128116156 128116268 -74212079 + L2 LINE L2 2452 2565 -749 222 301 29 58 chr4 128116252 128116355 -74211992 + L2 LINE L2 3129 3228 -85 807 128 14 54 chr4 128117294 128117442 -74210905 - THE1C LTR MaLR 0 375 234 847 45 0 9 chr4 128117773 128117884 -74210463 - AluY SINE Alu -30 281 172 22 56 0 0 chr4 128118525 128118561 -74209786 + AT_rich Low_complexity Low_complexity 1 36 0 717 313 49 70 chr4 128119532 128119690 -74208657 - MLT1J LTR MaLR -49 462 302 2234 108 0 0 chr4 128119690 128119986 -74208361 - AluSc SINE Alu -13 296 1 717 313 49 70 chr4 128119986 128120296 -74208051 - MLT1J LTR MaLR -209 302 4 260 331 114 12 chr4 128121179 128121345 -74207002 + MIR SINE MIR 5 187 -75 544 186 4 157 chr4 128122634 128122876 -74205471 + L1ME LINE L1 5363 5564 -600 876 174 267 68 chr4 128124489 128124800 -74203547 - MLT1E1 LTR MaLR -278 376 4 2051 122 7 0 chr4 128125071 128125357 -74202990 + AluSc SINE Alu 1 288 -21 488 238 269 0 chr4 128125412 128125605 -74202742 + MIR SINE MIR 18 262 0 28 0 0 0 chr4 128125699 128125727 -74202620 + AT_rich Low_complexity Low_complexity 1 28 0 2420 158 67 18 chr4 128125730 128126224 -74202123 + L1MA7 LINE L1 5771 6288 -3 24 53 0 0 chr4 128126586 128126624 -74201723 + AT_rich Low_complexity Low_complexity 1 38 0 1399 178 4 25 chr4 128126855 128127097 -74201250 + AluJb SINE Alu 1 237 -75 572 297 29 29 chr4 128127186 128127395 -74200952 - MIR SINE MIR 0 262 54 1938 150 42 33 chr4 128127707 128128068 -74200279 + THE1B LTR MaLR 1 364 0 11424 108 3 2 chr4 128128068 128129646 -74198701 + THE1B-int LTR MaLR 1 1580 0 2131 122 38 49 chr4 128129646 128130014 -74198333 + THE1B LTR MaLR 1 364 0 438 252 77 14 chr4 128132247 128132390 -74195957 - MLT1J2 LTR MaLR -45 405 254 348 260 95 15 chr4 128132416 128132555 -74195792 - MLT1J1 LTR MaLR -201 208 64 457 339 180 28 chr4 128132734 128133162 -74195185 + L2 LINE L2 2245 2737 -577 423 245 197 7 chr4 128133516 128133663 -74194684 + MER5B DNA MER1_type 4 178 0 25 0 0 0 chr4 128134420 128134445 -74193902 + AT_rich Low_complexity Low_complexity 1 25 0 235 227 47 78 chr4 128134723 128134851 -74193496 + MLT1K LTR MaLR 447 570 -18 2183 68 41 14 chr4 128136190 128136519 -74191828 - AluYa5 SINE Alu 0 337 1 273 328 140 20 chr4 128136622 128136872 -74191475 + L2 LINE L2 2949 3228 -85 236 235 0 0 chr4 128137956 128138007 -74190340 - L2 LINE L2 -1 3312 3262 2036 122 3 26 chr4 128138958 128139261 -74189086 - AluSx SINE Alu -12 300 5 2159 121 62 14 chr4 128139416 128139772 -74188575 - THE1C LTR MaLR -2 373 1 6095 115 22 6 chr4 128139772 128140669 -74187678 - THE1C-int LTR MaLR 0 1580 669 1994 137 0 0 chr4 128140739 128141058 -74187289 + AluSx SINE Alu 2 320 0 40 37 0 0 chr4 128141095 128141149 -74187198 + AT_rich Low_complexity Low_complexity 1 54 0 277 238 16 0 chr4 128141273 128141336 -74187011 - L1ME LINE L1 -445 5676 5613 212 59 29 0 chr4 128141339 128141373 -74186974 + (TTC)n Simple_repeat Simple_repeat 1 35 0 468 322 225 44 chr4 128141522 128142654 -74185693 - L2 LINE L2 -371 2943 1607 398 326 86 5 chr4 128143575 128143762 -74184585 - MIR SINE MIR -41 221 20 25 0 0 0 chr4 128144536 128144561 -74183786 + AT_rich Low_complexity Low_complexity 1 25 0 26 64 0 0 chr4 128145129 128145176 -74183171 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr4 128145223 128145245 -74183102 + AT_rich Low_complexity Low_complexity 1 22 0 248 273 10 0 chr4 128145418 128145517 -74182830 + (TA)n Simple_repeat Simple_repeat 1 100 0 224 154 19 0 chr4 128148127 128148179 -74180168 + (TG)n Simple_repeat Simple_repeat 2 54 0 2216 97 17 0 chr4 128148272 128148570 -74179777 + AluSp SINE Alu 1 303 -10 312 347 149 30 chr4 128148789 128149192 -74179155 - L2 LINE L2 -4 3309 2859 293 297 34 20 chr4 128149318 128149466 -74178881 - L2 LINE L2 -579 2735 2586 2280 94 0 0 chr4 128149647 128149935 -74178412 - AluSg SINE Alu -22 288 1 747 176 0 15 chr4 128150028 128150164 -74178183 - AluJo SINE Alu -178 134 1 18898 163 39 25 chr4 128150194 128151846 -74176501 + L1MA1 LINE L1 12 1640 -6081 315 0 0 0 chr4 128151846 128151881 -74176466 + (GA)n Simple_repeat Simple_repeat 2 36 0 18898 163 39 25 chr4 128151881 128155653 -74172694 + L1MA1 LINE L1 1640 5359 -2362 266 83 0 0 chr4 128155653 128155689 -74172658 - tRNA-Gly-GGA tRNA tRNA -38 37 2 18898 163 39 25 chr4 128155689 128157006 -74171341 + L1MA1 LINE L1 5359 6903 -818 1991 177 8 19 chr4 128157006 128157385 -74170962 + THE1C LTR MaLR 1 375 0 18898 163 39 25 chr4 128157385 128157980 -74170367 + L1MA1 LINE L1 6903 7488 -233 21 95 0 0 chr4 128158915 128158978 -74169369 + AT_rich Low_complexity Low_complexity 1 63 0 22 0 0 0 chr4 128159009 128159031 -74169316 + AT_rich Low_complexity Low_complexity 1 22 0 474 280 16 82 chr4 128159565 128159808 -74168539 - MLT1J LTR MaLR -49 462 236 251 319 32 0 chr4 128159841 128159935 -74168412 - MLT1L LTR MaLR -516 99 3 2124 121 26 37 chr4 128160421 128160800 -74167547 + THE1C LTR MaLR 1 375 0 9978 132 12 29 chr4 128160800 128162408 -74165939 + THE1C-int LTR MaLR 1 1580 0 986 205 11 11 chr4 128162408 128162593 -74165754 + THE1C LTR MaLR 1 185 -190 294 257 129 71 chr4 128163081 128163221 -74165126 + MIR SINE MIR 2 149 -113 1046 52 7 0 chr4 128163816 128163951 -74164396 - L1P LINE L1 -1788 4358 4223 6004 48 0 0 chr4 128163951 128164674 -74163673 + L1PA5 LINE L1 5417 6147 -7 349 336 60 34 chr4 128164743 128164978 -74163369 - MIR SINE MIR -8 254 14 820 152 37 47 chr4 128165413 128165604 -74162743 + MER53 DNA DNA 1 189 0 652 278 57 48 chr4 128167075 128167155 -74161192 - MIR SINE MIR -30 232 154 1275 288 28 28 chr4 128167155 128167614 -74160733 - LTR40b LTR ERVL -3 459 1 652 278 57 48 chr4 128167614 128167742 -74160605 - MIR SINE MIR -108 154 22 211 337 95 0 chr4 128170247 128170342 -74158005 - L2 LINE L2 0 3272 3169 304 265 19 99 chr4 128170551 128170713 -74157634 - MIR SINE MIR -61 201 53 322 259 35 0 chr4 128171444 128171529 -74156818 + MER5A DNA MER1_type 9 96 -93 550 169 136 8 chr4 128171529 128171647 -74156700 - THE1B LTR MaLR 0 364 232 278 313 78 17 chr4 128171793 128171908 -74156439 - MER5B DNA MER1_type 0 178 57 256 217 12 12 chr4 128171918 128172001 -74156346 + (TATATG)n Simple_repeat Simple_repeat 5 87 0 222 318 93 31 chr4 128172635 128172764 -74155583 - MIR SINE MIR -113 149 13 1656 148 59 0 chr4 128175450 128175755 -74152592 - L1MB2 LINE L1 -2 6169 5847 996 180 28 0 chr4 128175877 128176063 -74152284 - L1MB2 LINE L1 -333 5838 5641 401 314 17 57 chr4 128177999 128178174 -74150173 + MIR3 SINE MIR 7 174 -34 198 0 0 0 chr4 128178307 128178329 -74150018 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2259 37 0 0 chr4 128178332 128178603 -74149744 - L1PA3 LINE L1 -10 6145 5875 184 259 0 37 chr4 128178712 128178766 -74149581 + MIR3 SINE MIR 10 61 -147 976 329 42 21 chr4 128178815 128179247 -74149100 - LTR33 LTR ERVL -62 459 19 392 135 14 0 chr4 128180277 128180351 -74147996 + (TA)n Simple_repeat Simple_repeat 1 75 0 2024 150 0 0 chr4 128180351 128180645 -74147702 - AluSx SINE Alu -18 294 1 846 237 32 0 chr4 128180645 128180831 -74147516 - MER20 DNA MER1_type -26 193 2 2961 149 61 59 chr4 128182783 128183426 -74144921 - MER73 LTR ERVL 0 644 1 781 233 68 35 chr4 128183525 128183870 -74144477 + MLT1A1 LTR MaLR 1 365 0 182 391 91 17 chr4 128184719 128184949 -74143398 - L2 LINE L2 -436 2878 2632 273 331 73 16 chr4 128184974 128185098 -74143249 + MIR SINE MIR 22 152 -110 772 223 42 6 chr4 128187583 128187749 -74140598 - MER5B DNA MER1_type 0 178 7 419 214 52 78 chr4 128187761 128187915 -74140432 + MIR SINE MIR 15 164 -98 1659 231 70 6 chr4 128187915 128188455 -74139892 - MER69 DNA AcHobo -1 2525 1951 309 206 0 118 chr4 128188850 128188952 -74139395 + L1MC4 LINE L1 6614 6703 -1339 * 324 286 0 22 chr4 128188920 128189011 -74139336 + L1MC4 LINE L1 6614 6702 -1340 4230 194 42 47 chr4 128189055 128189761 -74138586 - L1 LINE L1 -2818 4747 4062 2248 117 0 0 chr4 128189761 128190069 -74138278 - AluSg SINE Alu -2 308 1 4230 194 42 47 chr4 128190069 128190767 -74137580 - L1 LINE L1 -3503 4062 3362 1318 153 31 38 chr4 128190840 128191158 -74137189 + L1MA7 LINE L1 5999 6314 0 375 184 97 0 chr4 128191285 128191388 -74136959 - MER69 DNA AcHobo -872 354 242 24 32 0 0 chr4 128191503 128191534 -74136813 + AT_rich Low_complexity Low_complexity 1 31 0 28 29 0 0 chr4 128193216 128193251 -74135096 + AT_rich Low_complexity Low_complexity 1 35 0 190 328 155 35 chr4 128193791 128193907 -74134440 + L2 LINE L2 3142 3271 -1 212 204 102 0 chr4 128194699 128194748 -74133599 - MIR SINE MIR -115 93 40 180 439 7 14 chr4 128194719 128194858 -74133489 - L2 LINE L2 -162 3110 2973 * 366 281 138 9 chr4 128195344 128195561 -74132786 - L2 LINE L2 -921 2393 2149 372 59 0 0 chr4 128196019 128196070 -74132277 + (TG)n Simple_repeat Simple_repeat 2 52 0 365 336 49 25 chr4 128196215 128196459 -74131888 - L2 LINE L2 -102 3211 2962 348 304 48 0 chr4 128196458 128196583 -74131764 - L2 LINE L2 -513 2801 2671 * 279 266 9 80 chr4 128196655 128196768 -74131579 + GA-rich Low_complexity Low_complexity 3 107 0 293 267 12 35 chr4 128197918 128198004 -74130343 - L2 LINE L2 -1 3271 3188 285 113 19 19 chr4 128199323 128199376 -74128971 - MER94 DNA DNA -3 131 79 1183 222 89 10 chr4 128201031 128201445 -74126902 - MER114 LTR ERV 0 648 202 240 35 0 0 chr4 128201455 128201484 -74126863 + (TG)n Simple_repeat Simple_repeat 2 30 0 328 237 140 9 chr4 128201498 128201612 -74126735 - MER114 LTR ERV -510 138 10 586 257 119 18 chr4 128202325 128202551 -74125796 + MIR SINE MIR 7 255 -7 309 295 31 39 chr4 128204442 128204571 -74123776 + HAL1b LINE L1 333 460 -888 25 0 0 0 chr4 128204573 128204598 -74123749 + AT_rich Low_complexity Low_complexity 1 25 0 16718 114 30 47 chr4 128204620 128208622 -74119725 + L1PA7 LINE L1 10 4045 -2416 6888 67 1 3 chr4 128208622 128209620 -74118727 + L1PA7 LINE L1 5472 6468 -1 396 306 115 19 chr4 128209627 128209836 -74118511 + HAL1b LINE L1 495 723 -625 222 37 0 0 chr4 128209872 128209899 -74118448 + (GA)n Simple_repeat Simple_repeat 2 28 0 189 121 0 0 chr4 128209951 128209984 -74118363 + (TATAA)n Simple_repeat Simple_repeat 4 36 0 390 254 72 43 chr4 128210714 128210852 -74117495 + MLT1E LTR MaLR 24 165 -428 * 578 285 30 86 chr4 128210848 128211115 -74117232 + MLT1E LTR MaLR 121 372 -221 293 266 0 25 chr4 128211119 128211198 -74117149 + GA-rich Low_complexity Low_complexity 1 77 0 1818 224 124 58 chr4 128211284 128211949 -74116398 + L1MC4 LINE L1 7216 7941 -101 288 0 0 0 chr4 128211949 128211981 -74116366 + (TG)n Simple_repeat Simple_repeat 2 33 0 1818 224 124 58 chr4 128211981 128212090 -74116257 + L1MC4 LINE L1 7941 8041 -1 333 207 150 36 chr4 128212159 128212299 -74116048 - L1ME4a LINE L1 -13 6108 5953 1933 314 123 9 chr4 128212469 128213500 -74114847 + L2 LINE L2 1986 3121 -192 254 298 25 44 chr4 128213834 128213929 -74114418 + L1M4 LINE L1 4942 5034 -1112 1034 221 81 74 chr4 128213929 128214322 -74114025 + MSTD LTR MaLR 1 396 0 254 298 25 44 chr4 128214322 128214384 -74113963 + L1M4 LINE L1 5034 5096 -1050 21 0 0 0 chr4 128214578 128214599 -74113748 + AT_rich Low_complexity Low_complexity 1 21 0 218 241 17 0 chr4 128214996 128215054 -74113293 + (TA)n Simple_repeat Simple_repeat 2 60 0 333 0 0 0 chr4 128215056 128215093 -74113254 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr4 128215211 128215232 -74113115 + AT_rich Low_complexity Low_complexity 1 21 0 2184 94 0 23 chr4 128216008 128216316 -74112031 + AluSq SINE Alu 1 301 -12 1499 247 31 31 chr4 128217862 128218344 -74110003 - Charlie4a DNA MER1_type -7 501 20 3254 152 107 0 chr4 128219028 128219634 -74108713 + LTR51 LTR ERV1 1 671 0 281 250 71 0 chr4 128220102 128220186 -74108161 - MIR3 SINE MIR -1 207 118 374 347 30 6 chr4 128220377 128220544 -74107803 - MIR SINE MIR -74 188 18 207 186 0 0 chr4 128220712 128220755 -74107592 + (TA)n Simple_repeat Simple_repeat 1 43 0 17733 40 0 0 chr4 128220806 128223766 -74104581 + L1PA5 LINE L1 3187 6154 0 1892 70 0 0 chr4 128223977 128224221 -74104126 - L1PA13 LINE L1 -4 6159 5916 1736 180 0 14 chr4 128224254 128224549 -74103798 + AluJo SINE Alu 2 292 -20 23 33 0 0 chr4 128224574 128224604 -74103743 + AT_rich Low_complexity Low_complexity 1 30 0 438 346 0 10 chr4 128225331 128225533 -74102814 + MLT1L LTR MaLR 12 211 -404 22 0 0 0 chr4 128225742 128225764 -74102583 + AT_rich Low_complexity Low_complexity 1 22 0 191 350 29 0 chr4 128226152 128226280 -74102067 - MIR SINE MIR -24 184 49 180 323 138 0 chr4 128226638 128226703 -74101644 + MIR SINE MIR 66 139 -69 3316 157 26 20 chr4 128226729 128227378 -74100969 + L1MA9 LINE L1 5625 6277 -35 257 252 28 84 chr4 128227405 128227512 -74100835 + MIR SINE MIR 162 262 0 181 333 91 0 chr4 128227744 128227810 -74100537 + L2 LINE L2 3139 3210 -62 2837 10 0 0 chr4 128230772 128231082 -74097265 - AluYa5 SINE Alu -1 310 1 515 335 30 63 chr4 128231393 128231613 -74096734 - L2 LINE L2 -19 3294 3091 1795 126 0 42 chr4 128231613 128231898 -74096449 + AluJb SINE Alu 40 312 0 515 335 30 63 chr4 128231898 128232071 -74096276 - L2 LINE L2 -222 3091 2914 269 115 0 33 chr4 128232815 128232876 -74095471 + (GAAA)n Simple_repeat Simple_repeat 4 62 0 1055 169 53 5 chr4 128232897 128233086 -74095261 - MSTA LTR MaLR -230 198 1 677 172 9 1 chr4 128233086 128233214 -74095133 + MER5A DNA MER1_type 20 136 -42 2281 97 39 33 chr4 128233678 128234040 -74094307 - THE1B LTR MaLR 0 364 1 435 323 53 49 chr4 128234367 128234593 -74093754 + MIR SINE MIR 30 256 -6 1585 91 3 224 chr4 128234614 128234975 -74093372 - AluSq SINE Alu -32 281 1 25 0 0 0 chr4 128234975 128235000 -74093347 + AT_rich Low_complexity Low_complexity 1 25 0 596 240 82 6 chr4 128236881 128237064 -74091283 - L1MEc LINE L1 -2238 3977 3781 428 211 49 21 chr4 128237088 128237230 -74091117 - L1MEc LINE L1 -4273 2123 1978 * 642 241 64 34 chr4 128237226 128237440 -74090907 - L1MEc LINE L1 -2455 3760 3535 1049 202 64 69 chr4 128237440 128237786 -74090561 + MER2 DNA MER2_type 1 344 0 642 241 64 34 chr4 128237786 128237837 -74090510 - L1MEc LINE L1 -2680 3535 3487 240 143 0 0 chr4 128237862 128237897 -74090450 + LTR30 LTR ERV1 13 47 -675 2269 96 102 208 chr4 128237897 128238494 -74089853 + LTR12 LTR ERV1 48 581 -133 22 0 0 0 chr4 128238535 128238557 -74089790 + AT_rich Low_complexity Low_complexity 1 22 0 5249 21 3 5 chr4 128238619 128239237 -74089110 + L1PA3 LINE L1 5537 6153 -2 256 200 136 39 chr4 128239328 128239483 -74088864 - L1MEc LINE L1 -3105 3110 2941 260 229 49 0 chr4 128239491 128239552 -74088795 - MLT1E LTR MaLR -529 64 1 431 249 117 33 chr4 128239591 128239925 -74088422 - L1MEc LINE L1 -4098 2298 1937 500 311 117 38 chr4 128240099 128241779 -74086568 - L1MEc LINE L1 -2222 3993 2181 282 312 58 86 chr4 128242201 128242407 -74085940 - L1MEc LINE L1 -5734 471 278 2373 109 19 21 chr4 128242407 128242783 -74085564 + THE1C LTR MaLR 1 375 0 282 312 58 86 chr4 128242783 128242938 -74085409 - L1MEc LINE L1 -5927 278 120 1130 329 108 12 chr4 128242963 128243526 -74084821 + L2 LINE L2 962 1578 -1736 328 318 31 31 chr4 128243597 128243726 -74084621 + MER69 DNA AcHobo 400 528 -1998 1861 271 60 6 chr4 128243858 128244132 -74084215 - L1M4 LINE L1 -1242 4904 4646 279 0 0 0 chr4 128244132 128244163 -74084184 + (CA)n Simple_repeat Simple_repeat 2 32 0 1861 271 60 6 chr4 128244163 128244610 -74083737 - L1M4 LINE L1 -1500 4646 4144 688 82 15 37 chr4 128244611 128244745 -74083602 + (TTTC)n Simple_repeat Simple_repeat 3 133 0 586 286 32 32 chr4 128244760 128244980 -74083367 + MIR SINE MIR 43 262 0 1668 111 97 198 chr4 128245514 128245990 -74082357 - MSTA LTR MaLR 0 428 1 8138 177 15 33 chr4 128245990 128247597 -74080750 - MSTA-int LTR MaLR 0 1580 3 1064 146 101 20 chr4 128247599 128247798 -74080549 - MSTA LTR MaLR 0 428 214 1512 155 107 7 chr4 128247829 128248100 -74080247 - MSTA LTR MaLR -130 298 1 251 253 40 0 chr4 128248439 128248514 -74079833 - MER103 DNA DNA -7 159 82 22 0 0 73 chr4 128249558 128249599 -74078748 + AT_rich Low_complexity Low_complexity 1 38 0 369 62 0 0 chr4 128250004 128250052 -74078295 + (CA)n Simple_repeat Simple_repeat 2 49 0 347 208 158 10 chr4 128251260 128251361 -74076986 + L2 LINE L2 3187 3302 -11 215 208 75 0 chr4 128251692 128251745 -74076602 - MIR3 SINE MIR -26 182 126 591 180 25 16 chr4 128252565 128252687 -74075660 - MLT1J LTR MaLR -325 186 64 286 270 88 34 chr4 128252695 128252899 -74075448 - L1M4 LINE L1 -2209 3937 3723 30274 121 11 57 chr4 128253080 128259518 -74068829 + L1PA7 LINE L1 9 6143 -11 28 29 0 0 chr4 128259518 128259553 -74068794 + AT_rich Low_complexity Low_complexity 1 35 0 941 340 138 29 chr4 128260025 128261291 -74067056 + L2 LINE L2 1910 3309 -4 6446 175 26 51 chr4 128263923 128265127 -74063220 + L1MA2 LINE L1 3069 4302 -2002 804 246 64 76 chr4 128265127 128265562 -74062785 + LTR7 LTR ERV1 21 450 0 6446 175 26 51 chr4 128265562 128267553 -74060794 + L1MA2 LINE L1 4302 6304 0 25 0 0 0 chr4 128267553 128267578 -74060769 + AT_rich Low_complexity Low_complexity 1 25 0 268 325 75 6 chr4 128267912 128268072 -74060275 - L1ME LINE L1 -477 5644 5474 269 216 14 14 chr4 128268475 128268549 -74059798 - L1MEc LINE L1 -5663 733 660 264 302 151 6 chr4 128268856 128269015 -74059332 - L1MEc LINE L1 -6121 275 94 502 294 43 5 chr4 128269088 128269275 -74059072 - L1MEd LINE L1 -4980 1139 946 580 226 133 147 chr4 128269580 128270010 -74058337 - L2 LINE L2 -12 3301 2878 399 219 0 0 chr4 128270224 128270320 -74058027 + (CATA)n Simple_repeat Simple_repeat 3 98 0 1158 298 168 0 chr4 128270424 128270840 -74057507 - L2 LINE L2 -447 2867 2382 246 186 23 0 chr4 128270852 128270895 -74057452 - L1MEd LINE L1 -5488 631 588 2088 176 11 13 chr4 128270940 128271314 -74057033 + THE1C LTR MaLR 1 373 -2 877 252 54 33 chr4 128271331 128271632 -74056715 - MER93b LTR ERV1 -20 383 46 252 0 0 0 chr4 128271980 128272008 -74056339 + (A)n Simple_repeat Simple_repeat 1 28 0 23 68 0 0 chr4 128272421 128272465 -74055882 + AT_rich Low_complexity Low_complexity 1 44 0 704 265 175 0 chr4 128272758 128272969 -74055378 + MIR SINE MIR 7 254 -8 1489 218 53 61 chr4 128272973 128273482 -74054865 - MLT1D LTR MaLR 0 505 1 23371 54 3 2 chr4 128274671 128278446 -74049901 - L1PA5 LINE L1 -15 6139 2356 2375 174 80 29 chr4 128278705 128279195 -74049152 + MLT2B2 LTR ERVL 1 515 0 6035 179 23 9 chr4 128279195 128280652 -74047695 - L1MC1 LINE L1 -7 6326 4859 925 205 43 5 chr4 128281366 128281589 -74046758 - L1MB7 LINE L1 -146 6038 5811 563 165 110 0 chr4 128281604 128281713 -74046634 + Charlie3 DNA MER1_type 156 276 -2434 1058 215 9 0 chr4 128281714 128281942 -74046405 - L1MB7 LINE L1 -356 5828 5599 8877 183 80 42 chr4 128281955 128282646 -74045701 - L1MC3 LINE L1 -274 7511 6847 2160 93 45 0 chr4 128282646 128282935 -74045412 + AluSp SINE Alu 3 304 -9 8877 183 80 42 chr4 128282935 128283365 -74044982 - L1MC3 LINE L1 -938 6847 6435 2117 163 6 6 chr4 128283365 128283702 -74044645 + MER1B DNA MER1_type 1 337 0 8877 183 80 42 chr4 128283702 128284816 -74043531 - L1MC3 LINE L1 -1350 6435 5192 5750 115 33 12 chr4 128284822 128285743 -74042604 - L1MA3 LINE L1 0 6305 5366 396 305 108 14 chr4 128285858 128286052 -74042295 + MIR SINE MIR 47 262 0 21 36 0 0 chr4 128286263 128286291 -74042056 + AT_rich Low_complexity Low_complexity 1 28 0 427 262 84 0 chr4 128287344 128287451 -74040896 - MIR3 SINE MIR -3 205 90 2285 144 91 45 chr4 128288868 128289531 -74038816 - MER51A LTR ERV1 -9 625 1 1975 129 0 46 chr4 128290211 128290513 -74037834 + AluSx SINE Alu 3 290 -22 207 0 0 0 chr4 128290513 128290536 -74037811 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 405 0 0 0 chr4 128290535 128290580 -74037767 + (CA)n Simple_repeat Simple_repeat 2 46 0 2205 102 7 0 chr4 128292061 128292355 -74035992 - AluSc SINE Alu -12 297 2 1189 129 1 7 chr4 128294309 128294506 -74033841 - pTR5 LTR ERV1 -2044 394 66 259 265 31 20 chr4 128294506 128294604 -74033743 - LTR30 LTR ERV1 -80 642 544 4095 162 40 45 chr4 128294604 128295571 -74032776 - pTR5 LTR ERV1 -413 2025 742 224 245 75 0 chr4 128295898 128295951 -74032396 - MIR SINE MIR -1 261 205 379 110 0 27 chr4 128295959 128296032 -74032315 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 2405 94 0 0 chr4 128296036 128296364 -74031983 - AluY SINE Alu 0 311 3 180 270 0 0 chr4 128296413 128296450 -74031897 - MIR SINE MIR -111 151 115 245 298 55 73 chr4 128296690 128296908 -74031439 + MER112 DNA MER1_type 5 218 -42 2386 71 0 0 chr4 128297078 128297384 -74030963 + AluY SINE Alu 1 306 0 204 83 62 0 chr4 128297384 128297432 -74030915 + (TA)n Simple_repeat Simple_repeat 2 52 0 266 342 78 52 chr4 128297558 128297827 -74030520 + L2 LINE L2 2699 2974 -340 1101 277 36 36 chr4 128298465 128298876 -74029471 + LTR16A1 LTR ERVL 45 455 -2 230 282 12 12 chr4 128299925 128300010 -74028337 + L1ME2 LINE L1 6045 6129 -35 29 28 0 0 chr4 128300408 128300444 -74027903 + AT_rich Low_complexity Low_complexity 1 36 0 686 268 6 86 chr4 128300797 128301148 -74027199 + L1MC5 LINE L1 6637 6959 -1002 424 198 25 0 chr4 128301220 128301301 -74027046 - Tigger7 DNA MER2_type -1 2486 2404 1772 143 86 0 chr4 128301302 128301603 -74026744 - Tigger7 DNA MER2_type -1906 581 255 546 237 0 8 chr4 128301614 128301732 -74026615 + L1MB7 LINE L1 5977 6093 -91 1290 232 4 0 chr4 128301755 128302001 -74026346 - Tigger7 DNA MER2_type -486 247 1 381 221 110 25 chr4 128302002 128302165 -74026182 + L1ME2 LINE L1 754 930 -5140 260 152 0 0 chr4 128302225 128302271 -74026076 + L1MC5 LINE L1 6989 7034 -927 630 259 24 10 chr4 128302288 128302493 -74025854 + L1MC5 LINE L1 7019 7226 -735 1535 238 0 0 chr4 128302640 128302942 -74025405 + AluJo SINE Alu 1 302 -10 2508 264 35 19 chr4 128303437 128305041 -74023306 + L1ME2 LINE L1 4344 5975 -123 246 330 18 0 chr4 128305038 128305147 -74023200 + L1M4 LINE L1 4698 4808 -1338 * 282 56 0 0 chr4 128305180 128305216 -74023131 + (TG)n Simple_repeat Simple_repeat 1 36 0 3105 139 26 8 chr4 128305878 128306374 -74021973 + LTR10B LTR ERV1 1 505 0 2786 181 16 41 chr4 128306936 128307542 -74020805 - L1MB7 LINE L1 -53 6131 5541 21 0 0 0 chr4 128308994 128309015 -74019332 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 128311223 128311245 -74017102 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 128312392 128312420 -74015927 + AT_rich Low_complexity Low_complexity 1 28 0 252 276 41 20 chr4 128314464 128314562 -74013785 - LTR67 LTR ERVL -9 548 449 1362 138 8 47 chr4 128314862 128315116 -74013231 + MLT1C LTR MaLR 3 246 -221 9449 205 44 64 chr4 128315117 128315442 -74012905 + L1PB4 LINE L1 2790 3120 -3739 1752 143 23 108 chr4 128315442 128315692 -74012655 - THE1B LTR MaLR 0 364 159 2029 135 0 20 chr4 128315692 128315989 -74012358 - AluSg SINE Alu -19 291 1 1752 143 23 108 chr4 128315989 128316136 -74012211 - THE1B LTR MaLR -205 159 1 11586 99 7 0 chr4 128316136 128317705 -74010642 - THE1B-int LTR MaLR 0 1580 1 2063 153 19 22 chr4 128317705 128318070 -74010277 - THE1B LTR MaLR 0 364 1 9449 205 44 64 chr4 128318070 128321846 -74006501 + L1PB4 LINE L1 3117 6835 -24 257 271 94 10 chr4 128324284 128324380 -74003967 + MIR SINE MIR 31 134 -74 843 304 145 29 chr4 128325187 128326082 -74002265 + L2 LINE L2 2304 3307 -6 2185 132 0 0 chr4 128326615 128326926 -74001421 - AluSx SINE Alu -1 311 1 183 352 97 21 chr4 128327031 128327176 -74001171 - L2 LINE L2 -4 3309 3154 307 319 26 17 chr4 128327312 128327428 -74000919 - MIR SINE MIR -135 127 11 299 395 93 32 chr4 128327591 128327999 -74000348 - L2 LINE L2 -375 2939 2507 1456 209 96 20 chr4 128328051 128328118 -74000229 + L1M1 LINE L1 18 79 -7486 330 67 0 0 chr4 128328118 128328163 -74000184 + (CA)n Simple_repeat Simple_repeat 2 46 0 1456 209 96 20 chr4 128328163 128328440 -73999907 + L1M1 LINE L1 79 388 -7177 896 172 6 6 chr4 128328422 128328579 -73999768 + THE1C-int LTR MaLR 1421 1577 -3 * 2554 105 16 11 chr4 128328582 128328955 -73999392 + THE1C LTR MaLR 1 375 0 6766 129 15 27 chr4 128328955 128330395 -73997952 + L1MA2 LINE L1 4372 5781 -523 2896 13 0 0 chr4 128330395 128330711 -73997636 + AluYb8 SINE Alu 1 316 -2 6766 129 15 27 chr4 128330711 128331230 -73997117 + L1MA2 LINE L1 5781 6304 0 2501 35 10 0 chr4 128332360 128332372 -73995975 - L1PA2 LINE L1 -4 6151 6141 180 97 0 0 chr4 128332372 128332403 -73995944 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 2501 35 10 0 chr4 128332403 128332701 -73995646 - L1PA2 LINE L1 -14 6141 5838 430 256 39 8 chr4 128335254 128335383 -73992964 + MIR SINE MIR 2 134 -128 197 328 30 0 chr4 128335713 128335780 -73992567 - L2 LINE L2 -11 3261 3193 206 220 237 0 chr4 128335813 128335872 -73992475 + L2 LINE L2 3241 3313 0 754 325 71 20 chr4 128335994 128336403 -73991944 + L2 LINE L2 1750 2179 -1135 408 313 39 0 chr4 128336716 128336844 -73991503 + L2 LINE L2 3138 3270 -2 184 229 33 82 chr4 128336960 128337021 -73991326 - L2 LINE L2 -339 2975 2918 950 189 11 26 chr4 128337662 128337807 -73990540 - MLT1B LTR MaLR -1 466 323 2249 112 123 5 chr4 128337807 128338190 -73990157 - MSTA LTR MaLR 0 428 1 950 189 11 26 chr4 128338190 128338234 -73990113 - MLT1B LTR MaLR -144 323 280 * 1284 174 11 38 chr4 128338205 128338470 -73989877 - MLT1B LTR MaLR -132 258 1 224 321 53 46 chr4 128338471 128338602 -73989745 - L2 LINE L2 -629 2685 2554 1209 188 0 35 chr4 128338604 128338833 -73989514 + AluJo SINE Alu 86 306 -6 240 340 9 0 chr4 128339023 128339129 -73989218 - L1M4 LINE L1 -3082 3064 2958 1640 302 99 34 chr4 128339129 128340126 -73988221 - L2 LINE L2 -10 3303 2255 242 290 32 0 chr4 128340199 128340292 -73988055 - L1M4 LINE L1 -3382 2764 2669 8456 169 10 91 chr4 128340740 128341182 -73987165 + L1PA15 LINE L1 3230 3706 -2459 225 0 0 0 chr4 128341182 128341207 -73987140 + (CAA)n Simple_repeat Simple_repeat 3 27 0 8456 169 10 91 chr4 128341207 128341899 -73986448 + L1PA15 LINE L1 3706 4452 -1713 7193 43 7 0 chr4 128341899 128343260 -73985087 + L1PA5 LINE L1 4782 6149 -5 8456 169 10 91 chr4 128343260 128345091 -73983256 + L1PA15 LINE L1 4452 5941 -224 3580 266 39 36 chr4 128345193 128346350 -73981997 + L1PA13 LINE L1 730 1889 -4898 328 232 116 56 chr4 128347668 128348035 -73980312 - MLT1H LTR MaLR 0 549 69 1702 178 117 14 chr4 128348035 128348395 -73979952 + MLT2C1 LTR ERVL 1 397 0 328 232 116 56 chr4 128348395 128348469 -73979878 - MLT1H LTR MaLR -480 69 1 1209 254 116 5 chr4 128348500 128348906 -73979441 - LTR16B LTR ERVL -13 451 1 243 114 0 0 chr4 128349498 128349542 -73978805 + (CA)n Simple_repeat Simple_repeat 1 44 0 649 279 47 43 chr4 128351026 128351302 -73977045 + L2 LINE L2 3028 3304 -9 329 286 225 28 chr4 128351304 128351482 -73976865 + MIR SINE MIR 43 255 -7 21 36 0 0 chr4 128351848 128351876 -73976471 + AT_rich Low_complexity Low_complexity 1 28 0 238 136 45 0 chr4 128352301 128352345 -73976002 - Alu SINE Alu -8 294 249 304 222 33 33 chr4 128353495 128353585 -73974762 + MLT1G1 LTR MaLR 498 587 -8 269 298 0 11 chr4 128353590 128353684 -73974663 + MLT1G1-int LTR MaLR 1 93 -1642 2736 251 87 18 chr4 128354672 128355757 -73972590 - L1MDa LINE L1 -2678 3862 2704 2487 229 63 11 chr4 128355744 128356536 -73971811 - L1MDa LINE L1 -4049 2491 1659 * 3141 102 11 8 chr4 128356567 128357036 -73971311 - L1PB2 LINE L1 -8 6143 5674 1691 153 32 0 chr4 128357037 128357345 -73971002 - L1PB1 LINE L1 -1 6150 5833 2261 112 0 0 chr4 128357657 128357960 -73970387 - AluSx SINE Alu -9 303 1 260 252 70 63 chr4 128358066 128358209 -73970138 + MIR SINE MIR 116 259 -3 1764 59 63 5 chr4 128358824 128359046 -73969301 - AluY SINE Alu -76 235 1 531 305 77 13 chr4 128361681 128361914 -73966433 + LTR50 LTR ERVL 385 632 -163 183 299 62 21 chr4 128362275 128362372 -73965975 - L3 LINE CR1 -228 1349 1249 191 210 62 62 chr4 128362384 128362465 -73965882 - L2 LINE L2 -971 2343 2263 400 356 0 19 chr4 128362827 128362987 -73965360 - L2 LINE L2 -1006 2308 2152 961 208 11 0 chr4 128363225 128363408 -73964939 - AluJo SINE Alu -11 301 117 230 123 53 53 chr4 128363420 128363477 -73964870 + T-rich Low_complexity Low_complexity 3 59 0 249 232 84 21 chr4 128363496 128363591 -73964756 + MIR SINE MIR 101 201 -61 498 325 19 49 chr4 128364256 128364564 -73963783 - L2 LINE L2 -1397 1917 1619 470 290 47 35 chr4 128368084 128368253 -73960094 + MIR3 SINE MIR 31 201 -7 1382 186 4 16 chr4 128369559 128369806 -73958541 + AluJo SINE Alu 15 258 -54 789 291 22 73 chr4 128369918 128370155 -73958192 - Zaphod DNA AcHobo -3720 311 92 968 87 7 0 chr4 128370155 128370293 -73958054 - L1PA7 LINE L1 0 6154 6016 789 291 22 73 chr4 128370293 128370371 -73957976 - Zaphod DNA AcHobo -3939 92 12 37 39 0 0 chr4 128370640 128370691 -73957656 + AT_rich Low_complexity Low_complexity 1 51 0 837 294 98 35 chr4 128371744 128371769 -73956578 + L1MEc LINE L1 8 30 -6366 2168 176 14 32 chr4 128371769 128372212 -73956135 + L1MA8 LINE L1 5851 6285 -6 837 294 98 35 chr4 128372212 128372665 -73955682 + L1MEc LINE L1 30 516 -5880 2373 226 65 43 chr4 128372682 128373499 -73954848 + L1M4 LINE L1 3744 4578 -1568 367 207 132 20 chr4 128373891 128374128 -73954219 - L1MC4 LINE L1 -98 7710 7442 2286 172 98 19 chr4 128374230 128374996 -73953351 - L1M1 LINE L1 -642 5658 4849 239 269 0 19 chr4 128375032 128375084 -73953263 + MER105 DNA DNA 3 53 -151 855 247 28 36 chr4 128375134 128375385 -73952962 - MER58 DNA MER1_type -92 249 1 280 75 0 0 chr4 128375419 128375459 -73952888 - AluSc SINE Alu -8 291 252 1401 240 55 61 chr4 128375954 128376413 -73951934 + MLT1D LTR MaLR 1 456 -49 321 111 0 0 chr4 128376520 128376565 -73951782 + MLT1D LTR MaLR 581 625 -1 253 256 181 9 chr4 128376969 128377136 -73951211 - MIR SINE MIR -50 212 15 1055 144 6 0 chr4 128378267 128378434 -73949913 - L1PA15 LINE L1 -1 6164 5997 2097 241 121 25 chr4 128379930 128380910 -73947437 + L1M4 LINE L1 3821 4935 -1211 986 223 32 43 chr4 128380910 128381188 -73947159 - MER20B DNA MER1_type -270 513 239 235 211 0 35 chr4 128381188 128381245 -73947102 + L2 LINE L2 3259 3313 0 291 156 0 0 chr4 128381494 128381539 -73946808 - LTR40a LTR ERVL -358 161 117 22 0 0 0 chr4 128382146 128382168 -73946179 + AT_rich Low_complexity Low_complexity 1 22 0 1033 274 122 17 chr4 128383472 128383774 -73944573 + Charlie7 DNA MER1_type 50 319 -2293 4073 98 41 2 chr4 128383774 128384387 -73943960 + L1PA12 LINE L1 5531 6167 -1 1033 274 122 17 chr4 128384387 128384616 -73943731 + Charlie7 DNA MER1_type 319 637 -1975 274 279 66 7 chr4 128384636 128384772 -73943575 + Charlie7 DNA MER1_type 2422 2565 -47 472 315 30 30 chr4 128385304 128385319 -73943028 - MIR SINE MIR -29 233 219 2663 20 0 0 chr4 128385319 128385618 -73942729 - AluYa5 SINE Alu -12 299 1 472 315 30 30 chr4 128385618 128385802 -73942545 - MIR SINE MIR -42 220 34 189 346 59 20 chr4 128385867 128385968 -73942379 + L3 LINE CR1 1468 1572 -5 2134 218 35 8 chr4 128386466 128386947 -73941400 - LTR40a LTR ERVL 0 519 26 317 247 62 31 chr4 128387784 128387881 -73940466 + MIR SINE MIR 86 185 -77 2250 108 7 0 chr4 128388093 128388400 -73939947 - AluSc SINE Alu 0 309 1 1293 249 132 23 chr4 128389259 128389948 -73938399 + L1MDb LINE L1 774 1490 -4916 6884 199 36 17 chr4 128389975 128392583 -73935764 + L1PBa LINE L1 3 1716 -5147 14199 220 18 16 chr4 128392584 128396835 -73931512 + L1PBa LINE L1 1804 6055 -807 202 283 61 40 chr4 128397432 128397531 -73930816 - MIR SINE MIR -12 250 150 248 229 0 43 chr4 128397611 128397652 -73930695 + CT-rich Low_complexity Low_complexity 4 42 -28 2210 142 28 42 chr4 128397652 128398083 -73930264 + MSTA LTR MaLR 3 427 -1 248 229 0 43 chr4 128398083 128398111 -73930236 + CT-rich Low_complexity Low_complexity 42 70 0 22 0 0 0 chr4 128398630 128398652 -73929695 + AT_rich Low_complexity Low_complexity 1 22 0 4016 180 39 24 chr4 128398963 128399436 -73928911 - L1MB2 LINE L1 -36 6135 5670 1473 197 119 19 chr4 128399436 128399796 -73928551 + MSTD LTR MaLR 1 396 0 4016 180 39 24 chr4 128399796 128400760 -73927587 - L1MB2 LINE L1 -501 5670 4677 1947 129 13 38 chr4 128401403 128401720 -73926627 - AluSx SINE Alu -3 309 1 35 24 0 0 chr4 128403728 128403770 -73924577 + AT_rich Low_complexity Low_complexity 1 42 0 183 42 0 0 chr4 128404161 128404185 -73924162 + (CA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr4 128405255 128405276 -73923071 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr4 128406821 128406857 -73921490 + AT_rich Low_complexity Low_complexity 1 36 0 2092 117 0 0 chr4 128406946 128407250 -73921097 - AluSg SINE Alu 0 304 1 219 231 135 0 chr4 128407420 128407472 -73920875 - L2 LINE L2 -62 3251 3193 2348 97 3 0 chr4 128408263 128408574 -73919773 - AluSp SINE Alu -1 312 1 4049 198 19 8 chr4 128408735 128409557 -73918790 + L1MA9 LINE L1 4433 5263 -883 2624 218 40 35 chr4 128409587 128410238 -73918109 + L1MA9 LINE L1 5591 6244 -68 * 5107 206 26 36 chr4 128410226 128410719 -73917628 + L1MA9 LINE L1 3784 4281 -2031 412 62 47 0 chr4 128410719 128410783 -73917564 + Alu SINE Alu 225 291 -18 5107 206 26 36 chr4 128410783 128412847 -73915500 + L1MA9 LINE L1 4281 6287 -25 297 183 42 0 chr4 128412851 128412922 -73915425 + L1MA9 LINE L1 6239 6312 0 1598 201 102 39 chr4 128413001 128413489 -73914858 - LTR40a LTR ERVL 0 519 1 422 319 110 0 chr4 128413503 128413694 -73914653 - MIR SINE MIR -3 259 48 393 273 83 75 chr4 128414227 128414480 -73913867 + L2 LINE L2 3057 3311 -2 21 0 0 0 chr4 128414644 128414665 -73913682 + AT_rich Low_complexity Low_complexity 1 21 0 481 235 151 0 chr4 128415583 128415740 -73912607 + MER5A DNA MER1_type 4 187 -2 223 351 146 39 chr4 128415922 128416312 -73912035 + L2 LINE L2 2235 2666 -648 207 371 72 46 chr4 128416426 128416620 -73911727 + L2 LINE L2 2827 3025 -247 1160 275 23 38 chr4 128416692 128417038 -73911309 + MLT1H LTR MaLR 44 384 -165 22 0 0 0 chr4 128417136 128417158 -73911189 + AT_rich Low_complexity Low_complexity 1 22 0 702 147 127 91 chr4 128417176 128417373 -73910974 + MER58C DNA MER1_type 12 215 0 690 283 122 19 chr4 128417386 128418192 -73910155 + L1ME3 LINE L1 4755 5651 -511 727 201 95 12 chr4 128418197 128418366 -73909981 + MER5A DNA MER1_type 1 183 -6 873 253 77 0 chr4 128418370 128418643 -73909704 + L1ME3 LINE L1 5654 5947 -223 308 339 43 47 chr4 128418676 128418909 -73909438 + L1ME3 LINE L1 5931 6162 0 682 186 43 14 chr4 128419990 128420130 -73908217 + MLT1A2 LTR MaLR 231 374 0 32 0 0 0 chr4 128420948 128420980 -73907367 + AT_rich Low_complexity Low_complexity 1 32 0 2410 97 0 0 chr4 128421727 128422037 -73906310 - AluSg SINE Alu 0 310 1 726 215 111 81 chr4 128422084 128422391 -73905956 - MLT1G LTR MaLR -24 566 251 1043 303 72 113 chr4 128422754 128422896 -73905451 + L2 LINE L2 704 850 -2464 1945 147 3 10 chr4 128422896 128423196 -73905151 + AluSx SINE Alu 1 298 -14 1043 303 72 113 chr4 128423196 128424907 -73903440 + L2 LINE L2 850 2480 -834 1044 271 47 47 chr4 128424918 128425346 -73903001 - LTR16A1 LTR ERVL -21 436 9 246 81 0 0 chr4 128425447 128425484 -73902863 + (CTG)n Simple_repeat Simple_repeat 3 39 0 807 330 67 44 chr4 128425497 128426531 -73901816 - ERVL LTR ERVL -415 5349 4234 13202 45 0 0 chr4 128426531 128428961 -73899386 - L1PA2 LINE L1 0 6155 3754 22896 40 46 3 chr4 128428961 128431850 -73896497 - L1PA2 LINE L1 -3132 3014 2 759 312 73 51 chr4 128431851 128432479 -73895868 - ERVL LTR ERVL -1241 4244 3603 21 0 0 0 chr4 128432821 128432842 -73895505 + AT_rich Low_complexity Low_complexity 1 21 0 16018 28 1 15 chr4 128433912 128435904 -73892443 + L1P LINE L1 2557 4519 -1627 234 293 77 19 chr4 128436405 128436596 -73891751 - MIR SINE MIR -11 251 6 474 262 47 20 chr4 128436736 128436885 -73891462 + Charlie8 DNA MER1_type 11 163 -2254 22 35 0 0 chr4 128437161 128437190 -73891157 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr4 128438170 128438200 -73890147 + AT_rich Low_complexity Low_complexity 1 30 0 189 107 0 0 chr4 128438924 128438952 -73889395 + (A)n Simple_repeat Simple_repeat 1 28 0 609 214 0 0 chr4 128439378 128439495 -73888852 + MLT1A1 LTR MaLR 1 117 -248 1525 215 95 11 chr4 128439501 128439850 -73888497 - MLT1F LTR MaLR -7 535 158 270 301 27 34 chr4 128439878 128440024 -73888323 - L1M3d LINE L1 -5745 146 2 2148 92 0 0 chr4 128440185 128440456 -73887891 + AluSx SINE Alu 1 271 -41 262 313 20 16 chr4 128441032 128441201 -73887146 + GA-rich Low_complexity Low_complexity 2 254 0 1215 182 46 73 chr4 128442923 128443225 -73885122 - AluJb SINE Alu -18 294 1 195 69 0 0 chr4 128443356 128443385 -73884962 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 949 324 101 48 chr4 128443558 128444292 -73884055 + L2 LINE L2 1821 2593 -721 253 177 191 21 chr4 128444312 128444453 -73883894 - Charlie7 DNA MER1_type -30 2582 2418 1072 260 105 39 chr4 128444469 128444562 -73883785 - Charlie7 DNA MER1_type -1914 698 613 417 20 0 0 chr4 128444562 128444612 -73883735 + (TA)n Simple_repeat Simple_repeat 2 51 0 1072 260 105 39 chr4 128444612 128445079 -73883268 - Charlie7 DNA MER1_type -1999 613 101 5324 150 26 56 chr4 128445090 128445351 -73882996 + L1PA16 LINE L1 4407 4674 -1492 243 0 0 0 chr4 128445351 128445378 -73882969 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5324 150 26 56 chr4 128445378 128446249 -73882098 + L1PA16 LINE L1 4674 5463 -703 2181 128 0 0 chr4 128446249 128446561 -73881786 + AluSx SINE Alu 1 312 0 5324 150 26 56 chr4 128446561 128447242 -73881105 + L1PA16 LINE L1 5463 6163 -3 252 349 103 16 chr4 128447538 128447664 -73880683 + L2 LINE L2 2614 2750 -564 213 302 60 35 chr4 128447714 128447830 -73880517 + L2 LINE L2 2922 3040 -232 186 274 299 25 chr4 128448329 128448581 -73879766 + L2 LINE L2 2816 2998 -315 1911 160 3 16 chr4 128448581 128448893 -73879454 - AluJo SINE Alu -2 310 3 186 274 299 25 chr4 128448893 128448998 -73879349 + L2 LINE L2 2998 3271 -42 663 300 27 27 chr4 128449013 128449233 -73879114 - MIR SINE MIR -21 241 22 230 393 95 3 chr4 128449968 128450317 -73878030 - L2 LINE L2 -9 3263 2883 1204 269 138 43 chr4 128450606 128451368 -73876979 - L2 LINE L2 -1 3312 2457 555 144 0 0 chr4 128451491 128451581 -73876766 - AluSg/x SINE Alu -6 306 217 268 319 95 0 chr4 128451601 128451717 -73876630 + MIR SINE MIR 80 206 -56 304 315 133 29 chr4 128451783 128452024 -73876323 - L2 LINE L2 -832 2482 2217 300 91 45 0 chr4 128452117 128452183 -73876164 + (TA)n Simple_repeat Simple_repeat 2 70 0 2177 227 41 36 chr4 128452210 128452897 -73875450 + L1MB5 LINE L1 3367 4056 -2090 4279 191 62 4 chr4 128452901 128454065 -73874282 + L1MB5 LINE L1 4938 6174 0 186 337 34 22 chr4 128454319 128454408 -73873939 - L2 LINE L2 -1006 2308 2219 396 40 0 0 chr4 128455612 128455662 -73872685 + (CA)n Simple_repeat Simple_repeat 2 51 0 780 276 28 32 chr4 128455889 128455937 -73872410 + MER119 DNA MER1_type 16 63 -520 2607 107 5 5 chr4 128455937 128456312 -73872035 + THE1C LTR MaLR 1 375 0 780 276 28 32 chr4 128456312 128456480 -73871867 + MER119 DNA MER1_type 63 231 -352 442 248 60 8 chr4 128456469 128456586 -73871761 + MER119 DNA MER1_type 461 583 0 * 1958 138 0 33 chr4 128456707 128457012 -73871335 - AluSx SINE Alu -14 298 4 22 0 0 0 chr4 128457256 128457278 -73871069 + AT_rich Low_complexity Low_complexity 1 22 0 2346 94 0 0 chr4 128457409 128457708 -73870639 + AluSq SINE Alu 1 299 -14 404 240 56 45 chr4 128458176 128458388 -73869959 - L1ME3A LINE L1 -331 5839 5627 453 279 66 35 chr4 128458487 128458774 -73869573 - L1MEd LINE L1 -3644 2485 2190 1496 194 63 20 chr4 128459153 128459503 -73868844 - MLT1A1 LTR MaLR 0 365 1 1696 277 96 50 chr4 128459680 128460766 -73867581 - L1MEd LINE L1 -4980 1139 4 598 114 265 90 chr4 128464491 128464657 -73863690 - MER20 DNA MER1_type 0 219 25 628 218 337 4 chr4 128464675 128464918 -73863429 - MER5C DNA MER1_type 0 324 1 22 35 0 0 chr4 128465049 128465078 -73863269 + AT_rich Low_complexity Low_complexity 1 29 0 324 232 116 0 chr4 128465094 128465206 -73863141 + L1MC5 LINE L1 7790 7914 -47 687 227 41 6 chr4 128466673 128466845 -73861502 - MER5B DNA MER1_type 0 178 1 184 287 61 52 chr4 128466983 128467098 -73861249 - MIR SINE MIR -24 238 123 2814 127 136 22 chr4 128467126 128467677 -73860670 + LTR18B LTR ERVL 1 614 0 243 182 70 126 chr4 128467777 128467920 -73860427 + MLT1L LTR MaLR 22 156 -459 664 219 55 0 chr4 128467935 128468081 -73860266 - MER5B DNA MER1_type -19 159 6 494 270 111 10 chr4 128468084 128468463 -73859884 + MLT1L LTR MaLR 146 606 -9 198 0 0 0 chr4 128469331 128469353 -73858994 + (T)n Simple_repeat Simple_repeat 1 22 0 419 258 10 0 chr4 128470992 128471089 -73857258 - MER81 DNA DNA -1 113 16 21 0 0 0 chr4 128472349 128472370 -73855977 + AT_rich Low_complexity Low_complexity 1 21 0 210 143 0 0 chr4 128472690 128472725 -73855622 + (TATG)n Simple_repeat Simple_repeat 1 35 0 2178 109 7 7 chr4 128473052 128473354 -73854993 + AluSx SINE Alu 1 302 -10 195 184 0 0 chr4 128473821 128473859 -73854488 + (TATG)n Simple_repeat Simple_repeat 2 39 0 353 200 89 0 chr4 128475556 128475646 -73852701 + MIR SINE MIR 76 173 -89 22 35 0 0 chr4 128476767 128476796 -73851551 + AT_rich Low_complexity Low_complexity 1 29 0 574 272 176 25 chr4 128476930 128477294 -73851053 + MLT1J LTR MaLR 36 454 -57 27 73 0 0 chr4 128478019 128478074 -73850273 + AT_rich Low_complexity Low_complexity 1 55 0 337 276 106 8 chr4 128478191 128478314 -73850033 + MIR3 SINE MIR 68 202 -6 210 206 0 0 chr4 128479252 128479315 -73849032 + A-rich Low_complexity Low_complexity 1 63 0 450 36 0 0 chr4 128479791 128479847 -73848500 + (CA)n Simple_repeat Simple_repeat 2 57 0 322 343 7 0 chr4 128479856 128479996 -73848351 + MER103 DNA DNA 5 145 -21 196 223 0 64 chr4 128480003 128480097 -73848250 + L2 LINE L2 1997 2084 -1230 2586 167 52 6 chr4 128481250 128481599 -73846748 - L1PB4 LINE L1 -2 6154 5772 369 0 0 0 chr4 128481599 128481640 -73846707 + (TG)n Simple_repeat Simple_repeat 2 42 0 2586 167 52 6 chr4 128481640 128481804 -73846543 - L1PB4 LINE L1 -384 5772 5617 339 247 41 10 chr4 128482070 128482167 -73846180 + L2 LINE L2 3214 3313 0 444 216 118 10 chr4 128483130 128483232 -73845115 + L2 LINE L2 3201 3313 0 237 348 156 0 chr4 128483316 128483451 -73844896 - L2 LINE L2 -1 3271 3116 266 130 22 0 chr4 128484215 128484261 -73844086 - MLT1F1 LTR MaLR 0 590 544 29 70 0 0 chr4 128484280 128484337 -73844010 + AT_rich Low_complexity Low_complexity 1 57 0 783 248 127 101 chr4 128484346 128484773 -73843574 - MLT1F1 LTR MaLR -104 447 1 239 351 48 55 chr4 128485933 128486226 -73842121 + L2 LINE L2 2451 2741 -573 42563 36 21 1 chr4 128486813 128492872 -73835475 + L1PA3 LINE L1 1 6180 0 21 36 0 0 chr4 128493101 128493129 -73835218 + AT_rich Low_complexity Low_complexity 1 28 0 1552 214 10 0 chr4 128493760 128494055 -73834292 + AluJo SINE Alu 1 298 -14 1013 254 120 27 chr4 128494460 128494861 -73833486 + L1MCc LINE L1 32 469 -5954 950 191 5 31 chr4 128495375 128495569 -73832778 + MER3 DNA MER1_type 3 191 -18 1710 260 70 42 chr4 128495626 128496085 -73832262 + L1MCc LINE L1 821 1308 -5115 327 49 0 0 chr4 128496085 128496126 -73832221 + (CA)n Simple_repeat Simple_repeat 2 42 0 1710 260 70 42 chr4 128496126 128496362 -73831985 + L1MCc LINE L1 1308 1536 -4887 820 210 0 0 chr4 128496462 128496605 -73831742 - FRAM SINE Alu -33 143 1 419 231 136 62 chr4 128496623 128497029 -73831318 + L1MCc LINE L1 1739 2174 -4948 669 233 189 0 chr4 128498107 128498287 -73830060 + MIR SINE MIR 26 239 -23 22 70 0 0 chr4 128499861 128499904 -73828443 + AT_rich Low_complexity Low_complexity 1 43 0 214 387 46 4 chr4 128500876 128501114 -73827233 + L2 LINE L2 1728 1975 -1339 218 411 40 33 chr4 128501597 128501899 -73826448 + L2 LINE L2 2253 2556 -758 214 240 20 0 chr4 128501925 128501975 -73826372 + (CAG)n Simple_repeat Simple_repeat 2 52 0 299 274 0 14 chr4 128502792 128502865 -73825482 - MER94 DNA DNA -4 130 59 1491 108 17 39 chr4 128502865 128503096 -73825251 + MLT2B2 LTR ERVL 6 231 -284 287 219 0 12 chr4 128503098 128503180 -73825167 + CT-rich Low_complexity Low_complexity 3 83 0 254 151 0 113 chr4 128503180 128503233 -73825114 + MLT2B3 LTR ERVL 185 231 -284 314 169 15 0 chr4 128503235 128503300 -73825047 + CT-rich Low_complexity Low_complexity 3 68 0 1192 222 38 73 chr4 128503327 128503670 -73824677 + MLT2B3 LTR ERVL 224 554 0 307 203 17 0 chr4 128503670 128503728 -73824619 - MER94 DNA DNA -71 63 5 1686 210 133 14 chr4 128503729 128504143 -73824204 + MLT1C LTR MaLR 1 463 -4 2438 75 0 0 chr4 128504157 128504452 -73823895 - AluY SINE Alu -16 295 1 641 274 41 40 chr4 128505289 128505514 -73822833 - MIR SINE MIR 0 262 36 427 296 51 66 chr4 128506127 128506401 -73821946 - L2 LINE L2 0 3313 3044 24 0 0 0 chr4 128510396 128510420 -73817927 + AT_rich Low_complexity Low_complexity 1 24 0 535 291 51 42 chr4 128511249 128511346 -73817001 - MIR SINE MIR -3 259 164 2394 100 3 0 chr4 128511346 128511656 -73816691 - AluSx SINE Alu -1 311 1 535 291 51 42 chr4 128511656 128511795 -73816552 - MIR SINE MIR -98 164 21 368 290 129 0 chr4 128512088 128512212 -73816135 + MIR3 SINE MIR 48 187 -21 2590 101 20 0 chr4 128513120 128513477 -73814870 + THE1B LTR MaLR 1 364 0 217 313 227 8 chr4 128513654 128513782 -73814565 + MIR3 SINE MIR 23 178 -30 214 303 0 45 chr4 128514924 128514990 -73813357 - L2 LINE L2 -537 2777 2715 2176 100 14 0 chr4 128515406 128515726 -73812621 - AluSx SINE Alu 0 324 1 321 248 16 40 chr4 128515730 128515855 -73812492 - L1MC4 LINE L1 -2 8040 7919 874 133 0 36 chr4 128515874 128516039 -73812308 - MER39B LTR ERV1 -72 581 423 253 98 49 0 chr4 128516039 128516080 -73812267 + AluSc SINE Alu 248 290 -9 262 274 80 17 chr4 128516393 128516568 -73811779 - L1ME LINE L1 -227 5894 5709 408 310 212 10 chr4 128517304 128517507 -73810840 - MIR SINE MIR -17 245 2 4754 206 68 55 chr4 128518137 128519553 -73808794 + Charlie1a DNA MER1_type 6 1439 -16 183 129 0 0 chr4 128520251 128520282 -73808065 + (TC)n Simple_repeat Simple_repeat 1 31 0 348 276 0 0 chr4 128520282 128520369 -73807978 + L1MC4 LINE L1 6609 6695 -1347 243 154 108 0 chr4 128520374 128520439 -73807908 - L1MC4 LINE L1 -1340 6702 6631 1402 247 75 17 chr4 128521679 128522145 -73806202 + L1ME3A LINE L1 5673 6165 -5 2819 7 0 0 chr4 128522187 128522492 -73805855 + AluYa5 SINE Alu 1 305 -6 1003 280 108 31 chr4 128522634 128523035 -73805312 - L2 LINE L2 -405 2909 2459 2316 105 0 0 chr4 128523035 128523340 -73805007 + AluSg SINE Alu 1 305 -5 1003 280 108 31 chr4 128523340 128523449 -73804898 - L2 LINE L2 -855 2459 2360 1696 156 3 14 chr4 128524466 128524755 -73803592 - AluSx SINE Alu -10 302 17 4851 48 2 11 chr4 128524856 128525915 -73802432 + L1PA5 LINE L1 4838 5884 -270 4474 136 228 116 chr4 128525917 128527441 -73800906 - pTR5 LTR ERV1 0 2438 744 2106 63 0 0 chr4 128527441 128527710 -73800637 + L1PA5 LINE L1 5880 6148 -6 1958 124 0 3 chr4 128528230 128528513 -73799834 + MER1A DNA MER1_type 248 529 0 550 175 62 0 chr4 128528779 128528876 -73799471 + U6 snRNA snRNA 1 103 -4 584 152 10 0 chr4 128529940 128530039 -73798308 - LTR29 LTR ERV1 -66 556 457 2425 125 36 9 chr4 128530048 128531028 -73797319 - L1MA3 LINE L1 -1 6304 5209 2086 146 0 0 chr4 128532144 128532438 -73795909 + AluSx SINE Alu 1 294 -18 21 89 0 0 chr4 128532537 128532593 -73795754 + AT_rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr4 128533337 128533360 -73794987 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr4 128534747 128534773 -73793574 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 128535425 128535446 -73792901 + AT_rich Low_complexity Low_complexity 1 21 0 436 268 39 52 chr4 128535786 128535939 -73792408 - MIR SINE MIR -13 249 99 282 360 50 22 chr4 128535960 128536099 -73792248 - MIR3 SINE MIR -35 173 31 1860 184 0 3 chr4 128536747 128537046 -73791301 + AluJb SINE Alu 1 298 -14 1007 250 15 4 chr4 128537077 128537349 -73790998 + L1MA9 LINE L1 6000 6274 -38 21 0 0 0 chr4 128538390 128538411 -73789936 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr4 128538479 128538527 -73789820 + AT_rich Low_complexity Low_complexity 1 48 0 1064 123 0 0 chr4 128538780 128538934 -73789413 + L1P LINE L1 1 154 -5992 * 29230 65 3 0 chr4 128538925 128542743 -73785604 + L1P LINE L1 693 4521 -1625 255 268 42 14 chr4 128543060 128543131 -73785216 - L2 LINE L2 -38 3234 3162 22 56 0 0 chr4 128545698 128545734 -73782613 + AT_rich Low_complexity Low_complexity 1 36 0 324 119 0 191 chr4 128546241 128546302 -73782045 + L1MA3 LINE L1 6202 6273 -32 1754 154 0 28 chr4 128546302 128546588 -73781759 + AluSx SINE Alu 1 278 -34 243 0 0 0 chr4 128546591 128546618 -73781729 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 324 119 0 191 chr4 128546618 128546678 -73781669 + L1MA3 LINE L1 6275 6303 -2 1633 172 42 3 chr4 128546857 128547142 -73781205 + AluJo SINE Alu 3 298 -14 209 322 0 0 chr4 128547324 128547383 -73780964 - L2 LINE L2 -9 3304 3246 318 267 58 42 chr4 128548126 128548246 -73780101 + MIR3 SINE MIR 54 175 -33 236 182 0 18 chr4 128549117 128549172 -73779175 + GA-rich Low_complexity Low_complexity 3 56 0 224 280 179 48 chr4 128551118 128551286 -73777061 + MIR3 SINE MIR 8 197 -11 21 71 0 0 chr4 128551449 128551491 -73776856 + AT_rich Low_complexity Low_complexity 1 42 0 556 333 6 0 chr4 128552303 128552480 -73775867 - MIR SINE MIR -5 257 80 1498 267 144 34 chr4 128553615 128554595 -73773752 - L2 LINE L2 -28 3285 2198 344 345 76 5 chr4 128554597 128554820 -73773527 + L1MC/D LINE L1 5404 5642 -2166 853 161 99 0 chr4 128557490 128557652 -73770695 + AluJb SINE Alu 134 311 -1 297 269 121 18 chr4 128557689 128557951 -73770396 + L1ME LINE L1 5435 5724 -397 1709 194 28 17 chr4 128558390 128558751 -73769596 + MLT1A1 LTR MaLR 1 365 0 3275 141 18 35 chr4 128559127 128559695 -73768652 + L1MA9 LINE L1 5521 6078 -234 2641 108 0 34 chr4 128559696 128560075 -73768272 + MER1A DNA MER1_type 3 368 -161 22 0 0 0 chr4 128561394 128561416 -73766931 + AT_rich Low_complexity Low_complexity 1 22 0 30 69 0 0 chr4 128564253 128564311 -73764036 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr4 128565110 128565132 -73763215 + AT_rich Low_complexity Low_complexity 1 22 0 300 223 121 42 chr4 128565617 128565783 -73762564 - L1ME4a LINE L1 -74 6047 5869 256 134 75 75 chr4 128565821 128565888 -73762459 - L1ME4a LINE L1 -337 5784 5718 660 12 0 0 chr4 128565963 128566043 -73762304 + L1PA3 LINE L1 6073 6152 -3 21 0 0 0 chr4 128566204 128566225 -73762122 + AT_rich Low_complexity Low_complexity 1 21 0 1882 199 20 0 chr4 128566577 128566934 -73761413 + MLT1A1 LTR MaLR 1 364 -1 325 327 19 10 chr4 128567266 128567370 -73760977 - MIR3 SINE MIR -49 159 55 229 304 0 14 chr4 128568977 128569046 -73759301 + GA-rich Low_complexity Low_complexity 3 70 0 22 0 0 0 chr4 128569739 128569761 -73758586 + AT_rich Low_complexity Low_complexity 1 22 0 2119 168 72 2 chr4 128570287 128570691 -73757656 + MSTB1 LTR MaLR 1 432 0 223 221 15 29 chr4 128571121 128571189 -73757158 + T-rich Low_complexity Low_complexity 2 68 0 26 0 0 0 chr4 128571469 128571495 -73756852 + AT_rich Low_complexity Low_complexity 1 26 0 735 266 61 9 chr4 128571577 128571806 -73756541 + MIR SINE MIR 21 261 -1 678 246 27 32 chr4 128571973 128572160 -73756187 + L2 LINE L2 2449 2634 -680 458 222 28 9 chr4 128572379 128572487 -73755860 + MER81 DNA DNA 2 111 -3 181 308 13 39 chr4 128572808 128572886 -73755461 + L2 LINE L2 2985 3060 -212 628 267 27 32 chr4 128573187 128573374 -73754973 - L2 LINE L2 -680 2634 2449 272 207 81 90 chr4 128574297 128574408 -73753939 + MIR SINE MIR 37 146 -116 575 297 77 14 chr4 128574601 128574823 -73753524 + MIR SINE MIR 8 243 -19 316 291 18 18 chr4 128574867 128574977 -73753370 - MIR3 SINE MIR -54 154 45 293 277 92 17 chr4 128575354 128575473 -73752874 + MIR3 SINE MIR 54 181 -27 186 218 36 18 chr4 128575769 128575824 -73752523 + MIR3 SINE MIR 148 203 -5 564 283 52 23 chr4 128576772 128577049 -73751298 + MLT1I LTR MaLR 95 427 -23 22 56 0 0 chr4 128577077 128577113 -73751234 + AT_rich Low_complexity Low_complexity 1 36 0 2172 112 62 14 chr4 128578614 128578970 -73749377 - THE1C LTR MaLR -2 373 1 325 331 31 31 chr4 128579064 128579194 -73749153 + L2 LINE L2 3142 3271 -1 3866 180 35 8 chr4 128579608 128580319 -73748028 + MER44D DNA MER2_type 1 602 -3 1104 250 20 64 chr4 128580713 128580730 -73747617 + MLT2B1 LTR ERVL 1 17 -503 2054 151 14 22 chr4 128580730 128581095 -73747252 + MLT1A1 LTR MaLR 4 365 0 1104 250 20 64 chr4 128581095 128581481 -73746866 + MLT2B1 LTR ERVL 17 386 -134 1789 131 131 27 chr4 128581920 128582249 -73746098 + THE1B LTR MaLR 2 364 0 218 364 31 35 chr4 128582323 128582581 -73745766 - L2 LINE L2 -1271 2043 1787 31 58 0 0 chr4 128582811 128582863 -73745484 + AT_rich Low_complexity Low_complexity 1 52 0 415 279 174 19 chr4 128583218 128583379 -73744968 + MIR SINE MIR 38 223 -39 1426 73 39 0 chr4 128584795 128585000 -73743347 - L1MA5A LINE L1 -12 6285 6073 1204 118 5 36 chr4 128585000 128585195 -73743152 - MER1B DNA MER1_type -2 337 149 6311 196 43 22 chr4 128585195 128586556 -73741791 - MER52A LTR ERV1 0 1755 366 342 239 11 7 chr4 128586536 128586673 -73741674 - MER52C LTR ERV1 -1021 257 56 * 283 239 0 0 chr4 128587295 128587362 -73740985 - MER52A LTR ERV1 -1688 67 1 592 172 172 0 chr4 128587362 128587490 -73740857 - MER1B DNA MER1_type -145 152 3 445 32 0 0 chr4 128587501 128587563 -73740784 - L1MA5A LINE L1 -225 6072 6011 208 306 150 12 chr4 128588950 128589110 -73739237 - L2 LINE L2 -9 3304 3123 37 76 0 0 chr4 128589132 128589211 -73739136 + AT_rich Low_complexity Low_complexity 1 79 0 2034 111 7 24 chr4 128589539 128589828 -73738519 + AluSx SINE Alu 1 284 -28 28 0 0 0 chr4 128589829 128589857 -73738490 + AT_rich Low_complexity Low_complexity 1 28 0 1529 186 61 3 chr4 128589910 128590205 -73738142 + AluJo SINE Alu 1 312 0 299 198 63 103 chr4 128590748 128590785 -73737562 - MIR SINE MIR -2 260 223 14146 126 32 18 chr4 128590785 128593164 -73735183 + Tigger1 DNA MER2_type 1 2414 -4 299 198 63 103 chr4 128593164 128593252 -73735095 - MIR SINE MIR -39 223 140 401 333 9 0 chr4 128593285 128593393 -73734954 + L2 LINE L2 3164 3272 0 192 263 150 38 chr4 128593391 128593471 -73734876 - MIR SINE MIR -154 108 20 * 1218 195 83 136 chr4 128593662 128594191 -73734156 + MLT1F LTR MaLR 42 542 0 26 30 0 0 chr4 128594711 128594744 -73733603 + AT_rich Low_complexity Low_complexity 1 33 0 615 320 23 39 chr4 128594856 128595115 -73733232 + MIR SINE MIR 2 256 -6 225 228 24 118 chr4 128597098 128597225 -73731122 + L2 LINE L2 2720 2834 -480 1054 187 57 54 chr4 128598735 128599137 -73729210 + MLT2D LTR ERVL 2 400 -64 313 254 55 7 chr4 128599152 128599288 -73729059 - L1MCa LINE L1 -1339 6983 1995 796 253 0 0 chr4 128599288 128599450 -73728897 - AluJb SINE Alu -12 300 139 24 0 0 0 chr4 128600981 128601005 -73727342 + AT_rich Low_complexity Low_complexity 1 24 0 815 295 137 37 chr4 128601054 128601515 -73726832 - L2 LINE L2 0 3313 2807 1920 146 3 10 chr4 128603572 128603866 -73724481 + AluSx SINE Alu 11 302 -10 217 231 0 0 chr4 128605056 128605095 -73723252 + (CACG)n Simple_repeat Simple_repeat 1 39 0 184 282 101 101 chr4 128605366 128605575 -73722772 + MIR SINE MIR 13 221 -41 1648 165 13 60 chr4 128605698 128606013 -73722334 - AluJo SINE Alu -12 300 1 592 281 198 19 chr4 128606178 128606552 -73721795 - L3 LINE CR1 -201 1376 936 24 0 0 0 chr4 128606876 128606900 -73721447 + AT_rich Low_complexity Low_complexity 1 24 0 1798 192 0 0 chr4 128607500 128607797 -73720550 - AluSx SINE Alu -15 297 1 2364 104 3 0 chr4 128608005 128608314 -73720033 + AluSx SINE Alu 1 310 -2 1343 246 36 92 chr4 128609032 128609366 -73718981 + MER68 LTR ERV1 11 362 -200 1893 170 3 0 chr4 128609366 128609666 -73718681 + AluJo SINE Alu 1 301 -11 1343 246 36 92 chr4 128609666 128609681 -73718666 + MER68 LTR ERV1 362 376 -186 315 0 0 0 chr4 128609681 128609716 -73718631 + (CA)n Simple_repeat Simple_repeat 2 36 0 1343 246 36 92 chr4 128609716 128609950 -73718397 + MER68 LTR ERV1 376 562 0 901 252 65 12 chr4 128612953 128613199 -73715148 - MIR SINE MIR -1 261 3 1399 208 131 48 chr4 128613239 128613756 -73714591 + MLT1E2 LTR MaLR 3 590 -64 23 0 0 0 chr4 128613840 128613863 -73714484 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 128613919 128613947 -73714400 + AT_rich Low_complexity Low_complexity 1 28 0 762 261 42 31 chr4 128614743 128615004 -73713343 - MER46C DNA MER2_type -73 265 2 476 257 23 23 chr4 128616481 128616656 -73711691 + GA-rich Low_complexity Low_complexity 3 177 0 892 295 95 48 chr4 128617467 128617684 -73710663 - L3 LINE CR1 -42 1535 1330 180 0 0 0 chr4 128617684 128617704 -73710643 + (TTG)n Simple_repeat Simple_repeat 2 21 0 892 295 95 48 chr4 128617704 128618052 -73710295 - L3 LINE CR1 -247 1330 943 1975 198 81 8 chr4 128618226 128618361 -73709986 + L1MB2 LINE L1 5448 5572 -599 2417 86 3 0 chr4 128618361 128618664 -73709683 + AluSg SINE Alu 1 304 -6 1975 198 81 8 chr4 128618664 128618997 -73709350 + L1MB2 LINE L1 5572 5950 -221 1398 157 24 35 chr4 128619000 128619255 -73709092 + AluJo SINE Alu 43 294 -18 1133 136 30 47 chr4 128619255 128619490 -73708857 + L1MB2 LINE L1 5931 6161 -10 1983 161 0 7 chr4 128619490 128619789 -73708558 - AluSx SINE Alu -11 301 5 451 293 187 4 chr4 128619880 128620105 -73708242 - L3 LINE CR1 -907 670 405 198 331 29 65 chr4 128620274 128620413 -73707934 - L3 LINE CR1 -1443 134 1 1430 132 8 4 chr4 128620452 128620702 -73707645 - L1MA5 LINE L1 0 6300 6050 323 322 87 19 chr4 128621022 128621230 -73707117 + L1MC2 LINE L1 3942 4163 -1983 298 273 0 0 chr4 128621771 128621848 -73706499 + MER117 DNA MER1_type 18 94 -103 25 31 0 0 chr4 128623520 128623552 -73704795 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 128623988 128624009 -73704338 + AT_rich Low_complexity Low_complexity 1 21 0 2056 121 0 0 chr4 128624012 128624324 -73704023 + AluSx SINE Alu 1 284 -28 3659 176 48 21 chr4 128624769 128625810 -73702537 + L1MC2 LINE L1 4859 5924 -420 399 119 0 17 chr4 128625812 128625871 -73702476 + Tigger2 DNA MER2_type 4 61 -2657 * 2217 176 66 2 chr4 128625859 128626284 -73702063 + Tigger2 DNA MER2_type 2267 2718 0 2019 159 53 15 chr4 128626286 128626683 -73701664 + L1MC2 LINE L1 5924 6335 -9 6978 200 107 41 chr4 128626871 128628705 -73699642 - Charlie5 DNA MER1_type 0 2624 584 1867 78 0 4 chr4 128628705 128628937 -73699410 - AluSq SINE Alu -82 231 1 6978 200 107 41 chr4 128628937 128629560 -73698787 - Charlie5 DNA MER1_type -2040 584 4 1545 70 0 0 chr4 128630032 128630232 -73698115 + L1PA5 LINE L1 5953 6152 -2 801 191 43 0 chr4 128630347 128630509 -73697838 + L1MB7 LINE L1 6008 6176 -8 189 306 0 32 chr4 128631091 128631153 -73697194 + L2 LINE L2 3249 3308 -5 2050 71 99 0 chr4 128631371 128631654 -73696693 + AluY SINE Alu 1 311 0 287 309 109 12 chr4 128631788 128631953 -73696394 + MLT1L LTR MaLR 394 574 -41 1845 155 0 0 chr4 128632098 128632376 -73695971 + AluSx SINE Alu 24 301 -11 1003 280 108 31 chr4 128633393 128633502 -73694845 + L2 LINE L2 2360 2459 -855 2316 105 0 0 chr4 128633502 128633807 -73694540 - AluSg SINE Alu -5 305 1 1003 280 108 31 chr4 128633807 128634208 -73694139 + L2 LINE L2 2459 2909 -405 2338 253 127 17 chr4 128634380 128635757 -73692590 - L1ME3A LINE L1 -5 6234 4702 22 0 0 0 chr4 128635778 128635800 -73692547 + AT_rich Low_complexity Low_complexity 1 22 0 5103 113 0 0 chr4 128635829 128636299 -73692048 - L1PA15 LINE L1 -6 6159 5690 2728 129 26 2 chr4 128636299 128636717 -73691630 - MSTA LTR MaLR 0 428 1 5103 113 0 0 chr4 128636717 128637341 -73691006 - L1PA15 LINE L1 -474 5691 5039 4085 243 13 21 chr4 128637341 128637901 -73690446 - L1P LINE L1 -2551 3595 3032 1871 133 37 0 chr4 128637901 128638171 -73690176 - AluSx SINE Alu -21 291 12 4085 243 13 21 chr4 128638171 128638759 -73689588 - L1P LINE L1 -3114 3032 2456 388 326 72 30 chr4 128639407 128639711 -73688636 - L1PA12 LINE L1 -7258 323 7 755 289 130 26 chr4 128639743 128640433 -73687914 - L1MDa LINE L1 -3397 2818 2091 614 231 28 28 chr4 128640613 128640795 -73687552 - L1MDa LINE L1 -4583 1813 1632 1001 190 72 0 chr4 128641940 128642135 -73686212 - AluJo SINE Alu -10 302 94 285 329 0 0 chr4 128642300 128642373 -73685974 - AluJ/FLAM SINE Alu -229 73 1 270 0 0 0 chr4 128642913 128642943 -73685404 + (CA)n Simple_repeat Simple_repeat 1 30 0 2279 93 0 0 chr4 128642944 128643235 -73685112 - AluY SINE Alu -20 291 1 491 295 95 36 chr4 128643474 128644276 -73684071 - L1MDa LINE L1 -4631 1584 792 260 301 57 41 chr4 128645259 128645382 -73682965 + L2 LINE L2 3099 3223 -90 3815 181 26 77 chr4 128646079 128646987 -73681360 - MER21B LTR ERV1 -1 862 1 23 0 0 0 chr4 128647600 128647623 -73680724 + AT_rich Low_complexity Low_complexity 1 23 0 943 151 7 0 chr4 128647624 128647776 -73680571 - L1PB2 LINE L1 -2 6149 5997 7538 123 3 0 chr4 128649891 128651043 -73677304 + L1P LINE L1 1278 2432 -3714 487 262 42 66 chr4 128651149 128651374 -73676973 + L1MC/D LINE L1 5455 5672 -474 22 0 0 0 chr4 128652555 128652577 -73675770 + AT_rich Low_complexity Low_complexity 1 22 0 320 273 56 98 chr4 128652834 128652977 -73675370 + MIR3 SINE MIR 48 184 -24 263 321 49 0 chr4 128653516 128653597 -73674750 + MIR SINE MIR 13 97 -165 1108 153 37 11 chr4 128653614 128653804 -73674543 - Tigger2 DNA MER2_type 0 2718 2524 1549 182 33 40 chr4 128654323 128654625 -73673722 + AluJo SINE Alu 1 300 -12 1663 141 32 0 chr4 128655214 128655463 -73672884 + AluSx SINE Alu 41 297 -15 9438 118 11 8 chr4 128655596 128657004 -73671343 - L1P3 LINE L1 -5044 1417 6 629 128 0 0 chr4 128657046 128657140 -73671207 + AluS SINE Alu 2 95 -218 470 87 39 0 chr4 128657518 128657621 -73670726 + (TA)n Simple_repeat Simple_repeat 1 107 0 21 0 0 0 chr4 128658201 128658222 -73670125 + AT_rich Low_complexity Low_complexity 1 21 0 1635 191 67 13 chr4 128658770 128659196 -73669151 + MLT2C1 LTR ERVL 10 397 0 1455 183 48 84 chr4 128659312 128659441 -73668906 + MER7A DNA MER2_type 2 134 -2904 1516 183 18 7 chr4 128659441 128659720 -73668627 - AluJo SINE Alu -30 282 1 1455 183 48 84 chr4 128659720 128659946 -73668401 + MER7A DNA MER2_type 134 342 -4 2320 118 30 0 chr4 128660123 128660488 -73667859 - L1PBa LINE L1 -4204 2659 2284 207 0 0 0 chr4 128661160 128661183 -73667164 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1752 183 3 0 chr4 128661185 128661470 -73666877 - AluJo SINE Alu -26 286 1 26 30 0 0 chr4 128662077 128662110 -73666237 + AT_rich Low_complexity Low_complexity 1 33 0 797 196 0 0 chr4 128662549 128662682 -73665665 + FLAM_C SINE Alu 1 133 0 25 83 0 0 chr4 128663219 128663279 -73665068 + AT_rich Low_complexity Low_complexity 1 60 0 1933 97 104 0 chr4 128663286 128663554 -73664793 + AluY SINE Alu 2 297 -14 279 257 284 27 chr4 128664758 128664906 -73663441 + MIR SINE MIR 3 188 -74 705 98 20 0 chr4 128664920 128665022 -73663325 + BC200 scRNA scRNA 1 104 -96 11141 95 2 3 chr4 128665123 128666736 -73661611 + L1P LINE L1 2452 4063 -2083 4436 164 26 29 chr4 128666741 128667724 -73660623 - MER11C LTR ERVK -4 1067 1 5041 86 7 3 chr4 128667724 128668425 -73659922 + L1P LINE L1 4058 4761 -1385 220 247 124 45 chr4 128669136 128669225 -73659122 + MIR SINE MIR 81 176 -86 300 255 43 53 chr4 128669655 128669749 -73658598 + MIR3 SINE MIR 109 201 -7 194 311 101 42 chr4 128670087 128670206 -73658141 - MER5A DNA MER1_type -57 132 7 2207 114 3 0 chr4 128670937 128671236 -73657111 - AluSq SINE Alu -13 300 1 25 31 0 0 chr4 128671425 128671457 -73656890 + AT_rich Low_complexity Low_complexity 1 32 0 378 143 13 26 chr4 128672287 128672364 -73655983 + MER116 DNA Mariner 5 80 0 870 238 66 27 chr4 128672396 128672652 -73655695 - Charlie7 DNA MER1_type -1957 655 390 472 332 75 13 chr4 128672766 128672992 -73655355 - Charlie8 DNA MER1_type -2153 264 25 398 235 41 10 chr4 128673262 128673360 -73654987 + MIR3 SINE MIR 94 194 -14 970 240 79 65 chr4 128673484 128674287 -73654060 + L1MC4 LINE L1 6963 7746 -296 6615 68 14 5 chr4 128674440 128675321 -73653026 + L1PA7 LINE L1 5255 6143 -11 2018 170 8 6 chr4 128675328 128675692 -73652655 - MLT1A1 LTR MaLR 0 365 1 237 159 0 0 chr4 128675895 128675939 -73652408 + CT-rich Low_complexity Low_complexity 1 44 0 2049 121 40 0 chr4 128676267 128676564 -73651783 + AluSg SINE Alu 1 309 -1 2247 183 16 0 chr4 128676635 128677061 -73651286 - MLT1C LTR MaLR 0 467 35 2397 100 0 0 chr4 128677065 128677375 -73650972 + AluSx SINE Alu 1 310 -2 1878 172 38 164 chr4 128677407 128678196 -73650151 + LTR8A LTR ERV1 38 727 0 255 128 0 0 chr4 128678196 128678232 -73650115 - MLT1C LTR MaLR -431 36 1 198 143 0 0 chr4 128678697 128678732 -73649615 + (T)n Simple_repeat Simple_repeat 1 35 0 2225 122 7 0 chr4 128679498 128679801 -73648546 - AluSx SINE Alu -7 305 1 329 193 148 11 chr4 128680219 128680307 -73648040 + L2 LINE L2 3214 3313 0 240 324 59 10 chr4 128680677 128680779 -73647568 + MIR SINE MIR 152 258 -4 3964 118 7 5 chr4 128680850 128681451 -73646896 - LTR43 LTR ERV1 0 602 1 345 82 131 16 chr4 128681978 128682039 -73646308 + MER57B LTR ERV1 3 70 -364 2338 133 68 2 chr4 128682658 128683070 -73645277 + L1MB2 LINE L1 5731 6169 -2 812 335 67 49 chr4 128683310 128684157 -73644190 + L1M4 LINE L1 2923 3789 -2357 1593 162 30 27 chr4 128684157 128684453 -73643894 + AluJo SINE Alu 1 297 -15 812 335 67 49 chr4 128684453 128684538 -73643809 + L1M4 LINE L1 3789 3871 -2275 2196 174 37 2 chr4 128684607 128685038 -73643309 + MER44D DNA MER2_type 2 502 -103 208 225 0 0 chr4 128685038 128685078 -73643269 + (TG)n Simple_repeat Simple_repeat 2 41 0 252 338 13 0 chr4 128685170 128685247 -73643100 + MIR SINE MIR 7 84 -178 1809 135 0 8 chr4 128686345 128686640 -73641707 + AluSq SINE Alu 31 313 0 449 123 0 0 chr4 128686880 128686953 -73641394 + MER57B LTR ERV1 362 434 0 1934 108 7 47 chr4 128687509 128687835 -73640512 + AluSq SINE Alu 1 314 0 23 33 0 0 chr4 128689183 128689213 -73639134 + AT_rich Low_complexity Low_complexity 1 30 0 232 175 0 0 chr4 128690256 128690296 -73638051 - L2 LINE L2 -11 3261 3222 1300 167 37 145 chr4 128690309 128690749 -73637598 - MER69 DNA AcHobo 0 2526 2153 2168 135 102 20 chr4 128690749 128691209 -73637138 - LTR54B LTR ERV1 0 498 1 1300 167 37 145 chr4 128691209 128691307 -73637040 - MER69 DNA AcHobo -373 2153 2046 333 0 0 0 chr4 128691350 128691387 -73636960 + (TG)n Simple_repeat Simple_repeat 2 38 0 301 85 0 51 chr4 128691488 128691547 -73636800 - Alu SINE Alu -247 56 1 1100 237 75 105 chr4 128693011 128693751 -73634596 - L1MC4a LINE L1 -309 5812 5321 684 319 151 42 chr4 128693870 128694500 -73633847 - L1MC4a LINE L1 -1109 5037 4477 1385 254 99 14 chr4 128694500 128694997 -73633350 - MER34 LTR ERV1 -1 541 3 684 319 151 42 chr4 128694997 128695473 -73632874 - L1MC4a LINE L1 -1669 4477 3808 21 0 0 0 chr4 128695969 128695990 -73632357 + AT_rich Low_complexity Low_complexity 1 21 0 893 192 0 0 chr4 128695990 128696172 -73632175 - L1 LINE L1 -2139 4007 3826 329 312 20 80 chr4 128696600 128696769 -73631578 + MIR SINE MIR 3 160 -62 1150 220 43 58 chr4 128696849 128697244 -73631103 + MER39 LTR ERV1 260 648 -59 258 246 64 64 chr4 128697328 128697531 -73630816 + MER39-int LTR ERV1 40 242 -6089 758 205 44 104 chr4 128697808 128698106 -73630241 + MER39-int LTR ERV1 1377 1656 -4675 330 67 0 0 chr4 128698109 128698154 -73630193 + (TC)n Simple_repeat Simple_repeat 1 45 0 2275 148 55 17 chr4 128698163 128698581 -73629766 + Tigger2a DNA MER2_type 1 434 0 353 290 37 0 chr4 128698591 128698698 -73629649 + MER31-int LTR ERV1 292 402 -4534 1472 198 117 14 chr4 128698958 128699317 -73629030 - MSTD LTR MaLR 0 396 1 3731 226 121 48 chr4 128699317 128700662 -73627685 - MSTD-int LTR MaLR 0 1651 209 240 275 0 14 chr4 128701068 128701137 -73627210 + MLT1J LTR MaLR 241 308 -203 849 156 21 26 chr4 128702296 128702488 -73625859 - THE1C LTR MaLR 0 375 185 2945 126 27 2 chr4 128702507 128702983 -73625364 + L1PB3 LINE L1 5666 6153 -1 232 143 127 16 chr4 128703018 128703081 -73625266 + L1MCc LINE L1 52 121 -6302 517 313 65 35 chr4 128703120 128703459 -73624888 + L1MCc LINE L1 249 597 -5826 369 286 18 50 chr4 128703589 128703809 -73624538 + L1MCc LINE L1 781 993 -5430 589 256 57 11 chr4 128703815 128703936 -73624411 + L1MCc LINE L1 2383 2497 -4625 2027 132 7 0 chr4 128703936 128704262 -73624085 + AluSx SINE Alu 1 328 0 589 256 57 11 chr4 128704262 128704401 -73623946 + L1MCc LINE L1 2497 2656 -4466 2205 232 82 48 chr4 128704438 128705443 -73622904 + L2 LINE L2 2282 3310 -3 245 280 189 14 chr4 128705722 128705865 -73622482 + MIR SINE MIR 47 214 -48 245 263 63 63 chr4 128705863 128705958 -73622389 + L2 LINE L2 3215 3309 -4 189 0 0 0 chr4 128706465 128706486 -73621861 + (T)n Simple_repeat Simple_repeat 1 21 0 349 181 36 36 chr4 128706609 128706692 -73621655 + MIR3 SINE MIR 85 167 -41 729 121 87 87 chr4 128706704 128706877 -73621470 - MER49 LTR ERV1 -9 914 742 680 260 62 52 chr4 128706887 128707195 -73621152 + L2 LINE L2 2967 3277 -36 778 218 0 6 chr4 128707663 128707833 -73620514 - MSTD-int LTR MaLR -1565 170 2 1657 207 31 20 chr4 128707835 128707907 -73620440 - MSTD LTR MaLR 0 396 326 1364 200 52 24 chr4 128707907 128708027 -73620320 + AluJo SINE Alu 1 116 -196 539 29 14 0 chr4 128708027 128708096 -73620251 + (TAAAA)n Simple_repeat Simple_repeat 4 73 0 1364 200 52 24 chr4 128708096 128708265 -73620082 + AluJo SINE Alu 116 298 -14 1657 207 31 20 chr4 128708265 128708584 -73619763 - MSTD LTR MaLR -70 326 1 188 214 0 0 chr4 128710265 128710307 -73618040 - L2 LINE L2 -5 3308 3267 741 143 23 23 chr4 128710606 128710739 -73617608 + FLAM_C SINE Alu 1 133 0 30 45 0 0 chr4 128711741 128711785 -73616562 + GC_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr4 128711991 128712013 -73616334 + GC_rich Low_complexity Low_complexity 1 22 0 2176 230 9 0 chr4 128714242 128714786 -73613561 - L1 LINE L1 -3002 3144 2596 28955 120 12 55 chr4 128714799 128721217 -73607130 - L1PA7 LINE L1 -11 6143 13 699 194 6 35 chr4 128721229 128721399 -73606948 - L1 LINE L1 -3535 2611 2447 622 331 43 25 chr4 128721549 128721827 -73606520 - L2 LINE L2 -481 2833 2551 22 35 0 0 chr4 128721952 128721981 -73606366 + AT_rich Low_complexity Low_complexity 1 29 0 303 236 51 6 chr4 128721992 128722131 -73606216 - LTR37A LTR ERV1 -8 460 294 238 156 31 0 chr4 128722135 128722199 -73606148 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 333 247 86 0 chr4 128722212 128722305 -73606042 - LTR37B LTR ERV1 -169 299 199 36 40 0 0 chr4 128724772 128724822 -73603525 + AT_rich Low_complexity Low_complexity 1 50 0 387 198 24 103 chr4 128724865 128724991 -73603356 - MER39 LTR ERV1 -262 445 330 182 314 14 29 chr4 128727235 128727305 -73601042 - L2 LINE L2 0 3272 3204 768 213 13 13 chr4 128728592 128728775 -73599572 + FAM SINE Alu 1 49 0 2408 81 7 7 chr4 128728859 128729168 -73599179 + AluY SINE Alu 1 309 -2 879 186 19 6 chr4 128829535 128829696 -73498651 + FAM SINE Alu 1 163 -12 205 179 0 0 chr4 128829870 128829909 -73498438 + (CA)n Simple_repeat Simple_repeat 1 39 0 24 0 0 0 chr4 128830291 128830315 -73498032 + AT_rich Low_complexity Low_complexity 1 24 0 274 330 59 25 chr4 128830984 128831102 -73497245 - MIR3 SINE MIR -23 185 64 2457 60 0 25 chr4 128831581 128831895 -73496452 - AluY SINE Alu -5 306 1 267 245 0 0 chr4 128832615 128832668 -73495679 + MIR SINE MIR 99 151 -111 274 366 84 0 chr4 128832959 128833101 -73495246 + MIR SINE MIR 28 181 -81 180 77 0 0 chr4 128833530 128833556 -73494791 + (TG)n Simple_repeat Simple_repeat 1 26 0 30 27 0 0 chr4 128833889 128833926 -73494421 + AT_rich Low_complexity Low_complexity 1 37 0 183 204 0 0 chr4 128834266 128834310 -73494037 + A-rich Low_complexity Low_complexity 1 44 0 354 330 92 17 chr4 128835024 128835197 -73493150 - MIR SINE MIR -56 206 21 249 163 0 0 chr4 128835255 128835304 -73493043 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 883 102 8 191 chr4 128835522 128835758 -73492589 + 7SK RNA RNA 1 193 0 1952 152 7 7 chr4 128836519 128836822 -73491525 + AluJb SINE Alu 1 303 -9 402 302 0 0 chr4 128837114 128837220 -73491127 + MER5A DNA MER1_type 4 109 -80 221 292 6 137 chr4 128838458 128838633 -73489714 - MIR SINE MIR -62 146 4 489 299 51 84 chr4 128839695 128840030 -73488317 + L2 LINE L2 2982 3305 -8 207 100 0 0 chr4 128841173 128841203 -73487144 + (TG)n Simple_repeat Simple_repeat 2 31 0 692 318 74 68 chr4 128841568 128841881 -73486466 + L2 LINE L2 2457 2766 -547 1755 152 4 18 chr4 128841881 128842158 -73486189 + AluJb SINE Alu 16 288 -24 692 318 74 68 chr4 128842158 128842600 -73485747 + L2 LINE L2 2766 3215 -98 991 360 31 31 chr4 128842862 128843640 -73484707 - L2 LINE L2 -208 3064 2292 1319 122 16 0 chr4 128843657 128843845 -73484502 + AluSx SINE Alu 23 213 -99 497 329 7 46 chr4 128843845 128843924 -73484423 - L2 LINE L2 -1307 2007 1926 1828 166 7 7 chr4 128843924 128844219 -73484128 + AluJb SINE Alu 1 295 -17 497 329 7 46 chr4 128844219 128844422 -73483925 - L2 LINE L2 -1388 1926 1736 24 0 0 0 chr4 128846790 128846814 -73481533 + AT_rich Low_complexity Low_complexity 1 24 0 312 258 26 90 chr4 128848591 128848746 -73479601 - MIR SINE MIR -2 260 116 691 169 0 7 chr4 128848933 128849069 -73479278 + L1MB4 LINE L1 5696 5830 -350 5363 159 17 8 chr4 128849480 128850893 -73477454 - L1MA9 LINE L1 0 6548 5120 1970 160 89 35 chr4 128850893 128851299 -73477048 + MSTC LTR MaLR 1 428 0 970 196 14 136 chr4 128851300 128851652 -73476695 + MLT1A1 LTR MaLR 57 365 0 8513 196 22 30 chr4 128851652 128853621 -73474726 - L1MA9 LINE L1 -1258 5124 3173 2035 144 7 0 chr4 128853621 128853913 -73474434 - AluSx SINE Alu -18 294 1 8513 196 22 30 chr4 128853913 128854142 -73474205 - L1MA9 LINE L1 -3209 3173 2944 1728 177 0 27 chr4 128854152 128854446 -73473901 - AluJb SINE Alu -9 303 18 777 178 79 0 chr4 128854488 128854690 -73473657 + L1MA7 LINE L1 6061 6278 -13 2024 268 65 25 chr4 128854717 128856393 -73471954 - L1MA9 LINE L1 -3453 2929 1201 186 192 58 77 chr4 128856918 128856970 -73471377 - L2 LINE L2 0 3272 3222 186 71 0 0 chr4 128856976 128857004 -73471343 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 587 269 115 0 chr4 128857007 128857163 -73471184 - MER5A DNA MER1_type -15 174 1 301 319 78 57 chr4 128857203 128857344 -73471003 + MER91A DNA MER1_type 7 150 -46 284 280 160 0 chr4 128857473 128857548 -73470799 + MER5A DNA MER1_type 8 94 -95 21 0 0 0 chr4 128858245 128858266 -73470081 + AT_rich Low_complexity Low_complexity 1 21 0 763 214 36 6 chr4 128858673 128858841 -73469506 - MER5A DNA MER1_type -16 173 1 30 27 0 0 chr4 128859170 128859207 -73469140 + AT_rich Low_complexity Low_complexity 1 37 0 228 111 0 0 chr4 128861460 128861496 -73466851 + (CCA)n Simple_repeat Simple_repeat 1 36 0 2163 103 17 0 chr4 128861745 128862047 -73466300 - AluSx SINE Alu -1 311 5 183 115 0 0 chr4 128862205 128862231 -73466116 - L2 LINE L2 -21 3251 3226 186 388 41 31 chr4 128862294 128862392 -73465955 - MIR3 SINE MIR -109 99 1 1027 143 6 0 chr4 128863271 128863453 -73464894 + L1MA4 LINE L1 6113 6295 -5 593 262 72 106 chr4 128864088 128864377 -73463970 - MLT1L LTR MaLR -48 567 307 216 0 0 0 chr4 128864377 128864401 -73463946 + (CA)n Simple_repeat Simple_repeat 1 24 0 593 262 72 106 chr4 128864401 128864698 -73463649 - MLT1L LTR MaLR -308 307 1 197 231 39 19 chr4 128865523 128865575 -73462772 + MIR3 SINE MIR 149 201 -7 453 286 88 22 chr4 128865652 128865834 -73462513 - L2 LINE L2 -1 3312 3119 650 184 0 27 chr4 128865851 128865998 -73462349 + L1MA4 LINE L1 6152 6294 -6 192 77 0 0 chr4 128866007 128866033 -73462314 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 207 0 0 0 chr4 128866424 128866447 -73461900 + (CA)n Simple_repeat Simple_repeat 2 24 0 211 87 58 72 chr4 128866621 128866690 -73461657 + (TTAAA)n Simple_repeat Simple_repeat 3 70 0 198 0 0 0 chr4 128872444 128872466 -73455881 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 387 98 0 0 chr4 128873279 128873399 -73454948 + (CA)n Simple_repeat Simple_repeat 1 181 0 387 98 0 0 chr4 128873399 128873460 -73454887 + (CA)n Simple_repeat Simple_repeat 1 61 0 24 0 0 0 chr4 128874141 128874165 -73454182 + AT_rich Low_complexity Low_complexity 1 24 0 634 301 153 45 chr4 128874529 128875777 -73452570 - L2 LINE L2 -2 3270 1872 25 0 0 0 chr4 128876120 128876145 -73452202 + AT_rich Low_complexity Low_complexity 1 25 0 257 289 111 42 chr4 128876186 128876376 -73451971 + MIR SINE MIR 10 212 -50 5942 175 69 25 chr4 128876528 128877901 -73450446 + Charlie1a DNA MER1_type 1 1433 -22 511 296 115 64 chr4 128878359 128878673 -73449674 - L2 LINE L2 -1 3271 2942 24 32 0 0 chr4 128878877 128878908 -73449439 + AT_rich Low_complexity Low_complexity 1 31 0 272 313 157 0 chr4 128879096 128879179 -73449168 - L2 LINE L2 -7 3265 3170 754 239 74 35 chr4 128880346 128880576 -73447771 + MIR SINE MIR 12 250 -12 220 255 293 9 chr4 128880811 128880917 -73447430 - MIR SINE MIR -112 150 15 22 0 0 0 chr4 128881440 128881462 -73446885 + AT_rich Low_complexity Low_complexity 1 22 0 269 234 263 17 chr4 128881496 128881671 -73446676 - MIR SINE MIR -2 260 43 216 0 0 0 chr4 128882619 128882643 -73445704 + (T)n Simple_repeat Simple_repeat 1 24 0 604 262 12 33 chr4 128884162 128884367 -73443980 - MLT1H LTR MaLR -305 244 1 1240 248 126 38 chr4 128885141 128885805 -73442542 + LTR50 LTR ERVL 1 771 -24 9355 174 18 2 chr4 128885911 128887672 -73440675 + L1PB1 LINE L1 3546 5334 -812 1363 211 9 6 chr4 128887667 128887989 -73440358 - L1PB1 LINE L1 -796 5350 5028 * 5212 117 10 3 chr4 128887985 128888412 -73439935 + L1PB1 LINE L1 5361 5798 -353 396 103 0 0 chr4 128888412 128888470 -73439877 + (TA)n Simple_repeat Simple_repeat 1 58 0 5212 117 10 3 chr4 128888470 128888823 -73439524 + L1PB1 LINE L1 5798 6147 -4 4457 143 75 72 chr4 128888831 128889820 -73438527 + L1MA9 LINE L1 5316 6307 -5 21 0 0 0 chr4 128891595 128891616 -73436731 + AT_rich Low_complexity Low_complexity 1 21 0 2001 203 33 26 chr4 128895216 128895675 -73432672 - LTR40b LTR ERVL 0 462 1 553 264 86 6 chr4 128895817 128895991 -73432356 + MIR SINE MIR 75 262 0 2303 82 14 0 chr4 128896005 128896298 -73432049 - AluSg SINE Alu -13 297 1 412 283 150 0 chr4 128897126 128897246 -73431101 - MIR3 SINE MIR -39 169 32 364 182 68 34 chr4 128897427 128897515 -73430832 + MIR SINE MIR 152 242 -20 2437 73 0 0 chr4 128899485 128899785 -73428562 - AluY SINE Alu -11 300 1 1688 185 0 3 chr4 128899880 128900167 -73428180 - AluJb SINE Alu -20 292 7 45 34 0 0 chr4 128900325 128900384 -73427963 + AT_rich Low_complexity Low_complexity 1 59 0 186 329 163 24 chr4 128902613 128902865 -73425482 - L2 LINE L2 0 3313 3027 218 399 14 21 chr4 128903152 128903295 -73425052 + L2 LINE L2 2633 2774 -540 539 160 48 24 chr4 128903307 128903432 -73424915 - L2 LINE L2 -1113 2201 2074 1718 177 7 7 chr4 128903911 128904211 -73424136 + AluJo SINE Alu 1 300 -12 34 42 0 0 chr4 128904673 128904721 -73423626 + AT_rich Low_complexity Low_complexity 1 48 0 689 226 28 34 chr4 128905185 128905362 -73422985 - MER5B DNA MER1_type -2 176 1 336 288 0 56 chr4 128905610 128905735 -73422612 + L1MC4 LINE L1 6603 6720 -1322 1874 155 17 3 chr4 128905855 128906151 -73422196 - AluJb SINE Alu -12 300 1 1478 176 59 22 chr4 128906440 128906776 -73421571 - AluJo SINE Alu 0 346 1 25 0 0 0 chr4 128908971 128908996 -73419351 + AT_rich Low_complexity Low_complexity 1 25 0 227 287 0 140 chr4 128911035 128911185 -73417162 - MIR3 SINE MIR -29 179 51 389 111 0 0 chr4 128911844 128911898 -73416449 - MIR3 SINE MIR -40 168 115 243 301 0 38 chr4 128914917 128915050 -73413297 + (TA)n Simple_repeat Simple_repeat 1 128 0 259 230 178 15 chr4 128915192 128915327 -73413020 - L1ME4a LINE L1 0 6121 5965 950 259 59 19 chr4 128915433 128915753 -73412594 - MER46C DNA MER2_type -5 333 1 516 250 76 23 chr4 128915900 128916072 -73412275 - L1ME4a LINE L1 -423 5698 5518 22 35 0 0 chr4 128916208 128916237 -73412110 + AT_rich Low_complexity Low_complexity 1 29 0 1821 123 0 49 chr4 128916380 128916690 -73411657 - AluSx SINE Alu 0 307 12 456 19 0 0 chr4 128916817 128916870 -73411477 + (TG)n Simple_repeat Simple_repeat 1 53 0 21 0 0 0 chr4 128919713 128919734 -73408613 + AT_rich Low_complexity Low_complexity 1 21 0 254 73 24 0 chr4 128919891 128919932 -73408415 + (CA)n Simple_repeat Simple_repeat 2 43 0 1504 243 112 17 chr4 128920678 128921152 -73407195 + LTR40a LTR ERVL 1 519 0 228 219 0 0 chr4 128921210 128921251 -73407096 - L2 LINE L2 -19 3253 3213 4614 38 2 0 chr4 128922208 128922762 -73405585 - L1PA5 LINE L1 -3 6151 5597 2107 115 0 3 chr4 128922995 128923290 -73405057 + AluSx SINE Alu 6 299 -13 1011 128 0 0 chr4 128923290 128923431 -73404916 + AluSg/x SINE Alu 134 274 -38 1029 107 6 17 chr4 128923445 128923623 -73404724 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 1043 54 11 48 chr4 128923635 128923821 -73404526 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 181 158 61 0 chr4 128926130 128926212 -73402135 + (TG)n Simple_repeat Simple_repeat 1 87 0 494 48 0 0 chr4 128926795 128926857 -73401490 - L1PA3 LINE L1 -1389 4757 4696 7584 30 0 0 chr4 128926857 128928243 -73400104 + L1PA3 LINE L1 4768 6152 -3 320 309 0 0 chr4 128928558 128928639 -73399708 + MIR SINE MIR 53 133 -129 315 191 9 19 chr4 128930014 128930119 -73398228 + (TA)n Simple_repeat Simple_repeat 1 104 0 198 0 0 0 chr4 128930443 128930465 -73397882 + (T)n Simple_repeat Simple_repeat 1 22 0 1730 136 11 11 chr4 128930504 128930776 -73397571 - AluSx SINE Alu -40 272 1 351 0 0 0 chr4 128931055 128931094 -73397253 + (CA)n Simple_repeat Simple_repeat 2 40 0 1099 248 92 10 chr4 128932601 128932915 -73395432 + MLT1C LTR MaLR 128 467 0 621 285 127 46 chr4 128933686 128934155 -73394192 + MER115 DNA AcHobo 156 688 -5 1896 174 0 3 chr4 128934228 128934539 -73393808 - AluJb SINE Alu -2 310 1 521 211 64 32 chr4 128935254 128935403 -73392944 + MIR SINE MIR 54 210 -52 1628 146 22 57 chr4 128935403 128935719 -73392628 + AluJo SINE Alu 1 305 -7 404 264 88 0 chr4 128936386 128936511 -73391836 + MER91C DNA MER1_type 5 140 0 2178 130 0 0 chr4 128938894 128939202 -73389145 + AluSg SINE Alu 1 308 -2 559 289 25 0 chr4 128941965 128942124 -73386223 - MIR SINE MIR -22 240 78 2211 196 32 8 chr4 128942430 128942988 -73385359 + MER82 DNA MER2_type 23 653 0 2328 110 0 0 chr4 128943234 128943542 -73384805 - AluSx SINE Alu -4 308 1 215 247 75 54 chr4 128943556 128943649 -73384698 - MIR SINE MIR -71 191 97 499 303 31 19 chr4 128943664 128943841 -73384506 - MIR3 SINE MIR -18 190 14 71 33 0 0 chr4 128944427 128944519 -73383828 + AT_rich Low_complexity Low_complexity 1 92 0 1003 85 0 0 chr4 128944702 128944831 -73383516 + AluSp/q SINE Alu 168 296 -17 2101 128 0 3 chr4 128948325 128948623 -73379724 + AluSg SINE Alu 1 297 -13 379 274 22 11 chr4 128948687 128948821 -73379526 + MIR3 SINE MIR 68 202 -6 307 239 129 52 chr4 128949402 128949565 -73378782 - MER5A DNA MER1_type 0 178 2 398 255 32 0 chr4 128951406 128951500 -73376847 - L2 LINE L2 0 3313 3217 779 214 86 27 chr4 128951517 128951737 -73376610 + ORSL DNA AcHobo 39 271 -4 418 301 81 43 chr4 128951737 128951946 -73376401 - L2 LINE L2 -88 3225 3009 22 70 0 0 chr4 128951975 128952018 -73376329 + AT_rich Low_complexity Low_complexity 1 43 0 204 182 0 0 chr4 128952841 128952885 -73375462 + (CA)n Simple_repeat Simple_repeat 2 45 0 1970 104 0 7 chr4 128953803 128954073 -73374274 - AluSg SINE Alu -12 298 31 225 379 65 0 chr4 128955337 128955461 -73372886 + MIR SINE MIR 92 223 -39 21 0 0 0 chr4 128956946 128956967 -73371380 + AT_rich Low_complexity Low_complexity 1 21 0 2041 113 0 3 chr4 128957800 128958084 -73370263 + AluSx SINE Alu 1 283 -29 293 0 27 0 chr4 128958087 128958124 -73370223 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 2095 122 7 0 chr4 128959037 128959332 -73369015 + AluSx SINE Alu 1 297 -15 24 32 0 0 chr4 128960280 128960311 -73368036 + AT_rich Low_complexity Low_complexity 1 31 0 305 329 104 43 chr4 128961497 128961661 -73366686 + MER5A DNA MER1_type 4 177 -12 209 305 63 52 chr4 128964067 128964241 -73364106 + L2 LINE L2 2811 2986 -286 286 214 24 48 chr4 128964365 128964449 -73363898 + L2 LINE L2 3191 3272 0 297 0 0 0 chr4 128964500 128964533 -73363814 + (TG)n Simple_repeat Simple_repeat 2 34 0 546 287 24 24 chr4 128965714 128965881 -73362466 + MIR SINE MIR 12 178 -84 193 339 0 0 chr4 128966473 128966532 -73361815 - L2 LINE L2 -556 2758 2700 783 259 95 44 chr4 128966684 128966958 -73361389 + L2 LINE L2 2256 2543 -771 2255 103 20 0 chr4 128967038 128967339 -73361008 - AluSg SINE Alu -3 307 1 1312 187 25 36 chr4 128967345 128967623 -73360724 - AluJo SINE Alu 0 312 38 287 264 14 14 chr4 128967727 128967799 -73360548 + MIR SINE MIR 44 115 -147 1103 251 133 26 chr4 128967806 128968412 -73359935 + L2 LINE L2 2585 3268 -45 308 328 63 104 chr4 128968886 128969154 -73359193 + L2 LINE L2 3012 3268 -4 37 52 0 0 chr4 128969420 128969478 -73358869 + AT_rich Low_complexity Low_complexity 1 58 0 2099 137 0 0 chr4 128969663 128969956 -73358391 - AluSx SINE Alu -19 293 1 234 274 43 26 chr4 128970221 128970338 -73358009 + L1MC4 LINE L1 7923 8041 -1 2109 119 0 7 chr4 128970564 128970873 -73357474 - AluSx SINE Alu 0 307 1 625 145 230 0 chr4 128971368 128971520 -73356827 - MER53 DNA DNA -2 187 1 21 0 0 0 chr4 128972350 128972371 -73355976 + AT_rich Low_complexity Low_complexity 1 21 0 2042 139 0 7 chr4 128972477 128972771 -73355576 - AluSx SINE Alu -20 292 1 218 389 33 0 chr4 128972776 128972866 -73355481 - L2 LINE L2 0 3272 3180 405 294 168 0 chr4 128972890 128973033 -73355314 - L3 LINE CR1 -4 1573 1407 816 215 5 46 chr4 128973084 128973279 -73355068 + AluJb SINE Alu 126 312 0 369 0 0 0 chr4 128975355 128975396 -73352951 + (ATG)n Simple_repeat Simple_repeat 2 42 0 296 331 209 12 chr4 128977003 128977175 -73351172 + MIR SINE MIR 41 246 -16 289 270 46 40 chr4 128978090 128978242 -73350105 + MIR SINE MIR 52 204 -58 366 299 7 101 chr4 128978814 128978959 -73349388 - L2 LINE L2 -1168 2146 2038 2511 51 0 0 chr4 128978959 128979252 -73349095 + AluY SINE Alu 1 293 -18 366 299 7 101 chr4 128979252 128979384 -73348963 - L2 LINE L2 -1276 2038 1895 471 338 26 22 chr4 128979579 128979807 -73348540 + L2 LINE L2 1202 1430 -1884 288 0 0 0 chr4 128980465 128980497 -73347850 + (TG)n Simple_repeat Simple_repeat 2 33 0 420 254 8 8 chr4 128980562 128980680 -73347667 - MER69 DNA AcHobo 0 2526 2409 318 294 118 61 chr4 128981899 128982127 -73346220 - MIR SINE MIR -17 245 5 3068 105 50 81 chr4 128982345 128982889 -73345458 + MER1A DNA MER1_type 1 527 0 289 245 94 108 chr4 128983321 128983533 -73344814 + MLT1K LTR MaLR 363 571 -17 679 297 159 24 chr4 128983967 128984438 -73343909 + L2 LINE L2 2778 3313 0 309 328 49 38 chr4 128985358 128985541 -73342806 + MIR SINE MIR 78 262 0 980 235 72 16 chr4 128987418 128987724 -73340623 + LTR37B LTR ERV1 146 468 0 180 278 19 19 chr4 128987741 128987795 -73340552 + L2 LINE L2 1221 1274 -2040 206 329 25 13 chr4 128987918 128987997 -73340350 - MIR3 SINE MIR -28 180 101 249 98 0 0 chr4 128989909 128989950 -73338397 + (TTG)n Simple_repeat Simple_repeat 2 42 0 611 187 0 0 chr4 128991637 128991744 -73336603 - U6 snRNA snRNA 0 107 1 2861 244 55 12 chr4 128992135 128993033 -73335314 + L1MC4 LINE L1 6868 7853 -189 23 54 0 0 chr4 128993132 128993169 -73335178 + AT_rich Low_complexity Low_complexity 1 37 0 1870 131 34 17 chr4 128993726 128994024 -73334323 + AluSq SINE Alu 1 303 -10 410 304 44 7 chr4 128994856 128994991 -73333356 - MIR SINE MIR -35 227 88 2188 118 0 13 chr4 128996087 128996393 -73331954 + AluSx SINE Alu 2 303 -9 490 256 0 33 chr4 128997305 128997426 -73330921 - L2 LINE L2 -2 3311 3195 24 0 0 0 chr4 128997724 128997748 -73330599 + AT_rich Low_complexity Low_complexity 1 24 0 203 175 0 0 chr4 128997991 128998031 -73330316 + A-rich Low_complexity Low_complexity 3 42 0 660 296 58 0 chr4 128998679 128998851 -73329496 + MER91A DNA MER1_type 15 196 0 184 235 176 12 chr4 129000462 129000547 -73327800 + MIR SINE MIR 10 108 -154 206 261 0 0 chr4 129000579 129000625 -73327722 - L2 LINE L2 0 3313 3268 6175 136 15 14 chr4 129000752 129002057 -73326290 + L1PB1 LINE L1 4494 5797 -354 426 20 0 0 chr4 129002057 129002108 -73326239 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 6175 136 15 14 chr4 129002108 129002461 -73325886 + L1PB1 LINE L1 5797 6148 -3 237 231 56 7 chr4 129002708 129002851 -73325496 + (TA)n Simple_repeat Simple_repeat 1 150 0 547 153 10 10 chr4 129002979 129003077 -73325270 + MER4A LTR ERV1 1 98 -566 1715 155 32 19 chr4 129003077 129003418 -73324929 + MER4A LTR ERV1 261 664 0 449 315 73 45 chr4 129003420 129003912 -73324435 - L1MC/D LINE L1 -459 5662 5263 1851 284 74 20 chr4 129003922 129004635 -73323712 - L2 LINE L2 -173 3140 2383 2545 103 11 16 chr4 129004635 129005012 -73323335 - THE1C LTR MaLR 0 375 1 1851 284 74 20 chr4 129005012 129005128 -73323219 - L2 LINE L2 -930 2383 2275 265 254 0 0 chr4 129005148 129005215 -73323132 - MIR SINE MIR -48 214 148 1648 146 22 72 chr4 129005389 129005710 -73322637 - AluJb SINE Alu -7 305 1 3498 158 21 67 chr4 129006491 129006672 -73321675 + LTR8 LTR ERV1 1 189 -502 1941 129 95 3 chr4 129006672 129006997 -73321350 + THE1A LTR MaLR 1 355 0 3498 158 21 67 chr4 129006997 129007537 -73320810 + LTR8 LTR ERV1 189 689 -2 415 256 44 0 chr4 129007545 129007635 -73320712 + MER21B LTR ERV1 1 94 -769 1517 230 94 69 chr4 129007681 129008320 -73320027 + MER21B LTR ERV1 98 752 -111 271 274 16 0 chr4 129008639 129008701 -73319646 - L2 LINE L2 0 3313 3251 292 231 0 90 chr4 129008840 129008918 -73319429 - MIR SINE MIR -184 78 8 1480 210 44 38 chr4 129009360 129009726 -73318621 - MLT1A2 LTR MaLR 0 374 7 185 383 0 35 chr4 129010415 129010530 -73317817 - L3 LINE CR1 -518 1059 949 2498 66 0 3 chr4 129012285 129012589 -73315758 + AluY SINE Alu 1 303 -8 203 146 24 0 chr4 129013421 129013462 -73314885 + CT-rich Low_complexity Low_complexity 3 44 0 196 333 85 39 chr4 129014368 129014497 -73313850 + L2 LINE L2 2902 3036 -236 21 0 0 0 chr4 129015903 129015924 -73312423 + AT_rich Low_complexity Low_complexity 1 21 0 389 319 133 6 chr4 129016719 129016885 -73311462 - MIR3 SINE MIR -2 206 20 24 77 0 0 chr4 129016931 129016983 -73311364 + AT_rich Low_complexity Low_complexity 1 52 0 557 100 11 0 chr4 129017355 129017445 -73310902 + (TTCC)n Simple_repeat Simple_repeat 2 92 0 256 167 0 0 chr4 129017445 129017487 -73310860 + CT-rich Low_complexity Low_complexity 5 46 0 759 214 14 0 chr4 129017487 129017627 -73310720 - FAM SINE Alu -18 167 26 480 202 0 0 chr4 129017619 129017703 -73310644 - FRAM/FAM SINE Alu -94 82 1 * 2071 118 0 0 chr4 129017758 129018038 -73310309 + AluSp SINE Alu 1 280 -33 240 35 0 0 chr4 129018039 129018068 -73310279 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 21 36 0 0 chr4 129019469 129019497 -73308850 + AT_rich Low_complexity Low_complexity 1 28 0 242 283 43 22 chr4 129019736 129019828 -73308519 - MER102a DNA MER1_type -16 314 221 365 356 17 17 chr4 129021231 129021408 -73306939 + MIR SINE MIR 32 208 -54 2580 47 0 0 chr4 129021645 129021945 -73306402 - AluY SINE Alu -11 300 1 2043 128 0 0 chr4 129022951 129023233 -73305114 + AluSx SINE Alu 31 312 0 238 260 6 6 chr4 129024949 129025126 -73303221 + GA-rich Low_complexity Low_complexity 1 177 0 21 36 0 0 chr4 129027420 129027448 -73300899 + AT_rich Low_complexity Low_complexity 1 28 0 680 131 0 0 chr4 129028043 129028142 -73300205 + FLAM_A SINE Alu 29 127 -15 2164 125 0 3 chr4 129028149 129028454 -73299893 + AluSx SINE Alu 1 304 -8 2012 106 0 0 chr4 129028454 129028742 -73299605 + AluSc SINE Alu 17 304 0 197 316 53 13 chr4 129031159 129031235 -73297112 + MIR3 SINE MIR 101 179 -29 35 0 0 0 chr4 129031688 129031723 -73296624 + AT_rich Low_complexity Low_complexity 1 35 0 332 299 0 0 chr4 129032337 129032414 -73295933 + MER5A DNA MER1_type 9 85 -104 430 218 81 16 chr4 129033205 129033329 -73295018 - L1ME3A LINE L1 -1 6169 6038 2087 136 0 0 chr4 129034225 129034511 -73293836 + AluSx SINE Alu 1 286 -26 752 254 17 15 chr4 129034751 129034955 -73293392 - MLT1H LTR MaLR -317 232 63 348 221 13 0 chr4 129035076 129035153 -73293194 + MLT1H LTR MaLR 464 541 -8 378 85 0 0 chr4 129036735 129036794 -73291553 + (TCTCCC)n Simple_repeat Simple_repeat 2 60 0 9322 90 24 34 chr4 129036802 129038198 -73290149 + SVA Other Other 3 1385 -1 2560 104 5 39 chr4 129039717 129040103 -73288244 - L1PB1 LINE L1 -1 6150 5778 242 300 7 43 chr4 129040160 129040300 -73288047 - AluSc SINE Alu -14 285 151 1254 109 0 59 chr4 129041607 129041622 -73286725 - L1P5 LINE L1 -358 5793 5779 1978 102 18 18 chr4 129041622 129041921 -73286426 - AluSq SINE Alu 0 313 15 1254 109 0 59 chr4 129041921 129042107 -73286240 - L1P5 LINE L1 -372 5779 5604 353 279 27 61 chr4 129042226 129042373 -73285974 + MIR SINE MIR 77 218 -44 2410 72 0 22 chr4 129044707 129045025 -73283322 + AluY SINE Alu 1 311 0 276 284 0 0 chr4 129045341 129045422 -73282925 + (TG)n Simple_repeat Simple_repeat 2 82 0 2527 74 7 0 chr4 129045769 129046078 -73282269 + AluSq SINE Alu 1 311 -2 2533 257 117 50 chr4 129046897 129047600 -73280747 - L2 LINE L2 0 3313 2658 2215 104 0 7 chr4 129047600 129047897 -73280450 + AluY SINE Alu 1 295 -16 2533 257 117 50 chr4 129047897 129047940 -73280407 - L2 LINE L2 -655 2658 2619 1580 149 8 4 chr4 129047940 129048179 -73280168 + AluSx SINE Alu 47 289 -23 251 71 24 0 chr4 129048179 129048221 -73280126 + (TTAAA)n Simple_repeat Simple_repeat 3 45 0 2533 257 117 50 chr4 129048230 129048855 -73279492 - L2 LINE L2 -694 2619 1803 1930 203 33 15 chr4 129049676 129050065 -73278282 - MSTD LTR MaLR 0 396 1 337 245 66 38 chr4 129050319 129050425 -73277922 - MLT1K LTR MaLR -17 571 463 25 51 0 0 chr4 129050601 129050640 -73277707 + AT_rich Low_complexity Low_complexity 1 39 0 1358 249 40 45 chr4 129053823 129054197 -73274150 - MLT1A2 LTR MaLR 0 374 3 1922 195 96 62 chr4 129054260 129054709 -73273638 + MLT1F LTR MaLR 13 483 -59 2341 71 0 7 chr4 129054709 129055005 -73273342 + AluY SINE Alu 1 294 -17 1922 195 96 62 chr4 129055005 129055068 -73273279 + MLT1F LTR MaLR 483 542 0 2099 155 0 0 chr4 129055134 129055443 -73272904 - AluJb SINE Alu -2 310 2 2361 115 0 0 chr4 129056012 129056325 -73272022 + AluSq SINE Alu 1 313 0 22 56 0 0 chr4 129056584 129056620 -73271727 + AT_rich Low_complexity Low_complexity 1 36 0 5812 53 10 21 chr4 129057386 129057938 -73270409 - LTR8 LTR ERV1 0 691 147 2360 73 0 7 chr4 129057938 129058238 -73270109 + AluY SINE Alu 2 299 -12 5812 53 10 21 chr4 129058238 129058384 -73269963 - LTR8 LTR ERV1 -544 147 1 247 223 76 63 chr4 129058384 129058483 -73269864 - MIR3 SINE MIR -133 75 4 369 222 25 0 chr4 129059988 129060069 -73268278 - Zaphod DNA AcHobo -3349 682 600 21 36 0 0 chr4 129060113 129060141 -73268206 + AT_rich Low_complexity Low_complexity 1 28 0 1057 238 34 4 chr4 129060226 129060495 -73267852 + Zaphod DNA AcHobo 436 712 -3319 6177 96 35 5 chr4 129060498 129061380 -73266967 - L1PA11 LINE L1 -8 6166 5258 985 204 91 68 chr4 129061380 129062105 -73266242 + Zaphod DNA AcHobo 673 4031 0 355 250 0 0 chr4 129062145 129062213 -73266134 - MIR3 SINE MIR -17 191 124 601 311 78 10 chr4 129062630 129062936 -73265411 - LTR33 LTR ERVL -186 335 9 2217 236 37 16 chr4 129064714 129065261 -73263086 - MER74B LTR ERVL -9 613 56 388 265 16 18 chr4 129065270 129065400 -73262947 + MIR SINE MIR 27 154 -65 887 111 0 0 chr4 129065412 129065529 -73262818 + AluSc SINE Alu 18 134 -175 1998 116 58 0 chr4 129065529 129065806 -73262541 + AluSc SINE Alu 1 293 -16 201 74 0 0 chr4 129066172 129066199 -73262148 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 189 328 164 18 chr4 129066960 129067131 -73261216 + L3b LINE CR1 1111 1306 -277 295 229 103 10 chr4 129067539 129067643 -73260704 + MIR SINE MIR 49 159 -58 2192 292 59 16 chr4 129067644 129068390 -73259957 + MER69 DNA AcHobo 25 802 -1724 249 148 37 19 chr4 129068399 129068453 -73259894 + MER69 DNA AcHobo 2031 2085 -441 397 118 186 20 chr4 129068512 129068613 -73259734 + MER69 DNA AcHobo 2085 2202 -324 259 251 74 107 chr4 129068613 129069003 -73259344 - MLT1H LTR MaLR 0 542 110 1120 221 70 6 chr4 129069073 129069385 -73258962 + MER69 DNA AcHobo 2195 2526 0 269 286 0 0 chr4 129069385 129069448 -73258899 + MIR SINE MIR 158 220 -42 245 305 0 0 chr4 129069623 129069705 -73258642 + L2 LINE L2 1904 1985 -1329 500 256 172 22 chr4 129069707 129069754 -73258593 - MIR SINE MIR -8 254 215 420 78 0 233 chr4 129069754 129069857 -73258490 - MADE1 DNA Mariner 0 80 2 500 256 172 22 chr4 129069857 129069989 -73258358 - MIR SINE MIR -47 215 48 201 250 208 42 chr4 129070091 129070235 -73258112 - MIR SINE MIR -86 176 9 2075 153 0 3 chr4 129070410 129070717 -73257630 + AluSx SINE Alu 1 306 -6 2008 125 4 0 chr4 129071182 129071514 -73256833 - AluSx SINE Alu 0 333 1 210 325 13 39 chr4 129071969 129072046 -73256301 + L2 LINE L2 2684 2758 -556 446 317 35 96 chr4 129072302 129072614 -73255733 + L2 LINE L2 2969 3261 -11 198 0 0 0 chr4 129072665 129072687 -73255660 + (TTA)n Simple_repeat Simple_repeat 2 23 0 429 226 105 40 chr4 129072703 129072889 -73255458 + MER41D LTR ERV1 282 499 -55 373 205 133 33 chr4 129073529 129073680 -73254667 - MLT1G1 LTR MaLR 0 595 430 297 202 135 22 chr4 129073731 129073820 -73254527 - MLT1G1 LTR MaLR -288 242 144 23 0 0 0 chr4 129074931 129074954 -73253393 + AT_rich Low_complexity Low_complexity 1 23 0 709 206 28 21 chr4 129074959 129075100 -73253247 + AluJo SINE Alu 2 143 -169 251 355 22 14 chr4 129075131 129075269 -73253078 + L2 LINE L2 1773 1911 -1403 272 357 86 36 chr4 129075504 129075921 -73252426 + L2 LINE L2 2422 2859 -455 282 283 138 46 chr4 129076041 129076281 -73252066 + L2 LINE L2 2996 3257 -56 766 266 112 0 chr4 129077503 129077717 -73250630 + MIR SINE MIR 15 252 -10 1811 88 17 4 chr4 129078508 129078747 -73249600 - L1PA5 LINE L1 0 6154 5913 324 49 0 0 chr4 129078747 129078788 -73249559 + L1PA5 LINE L1 5935 5975 -179 1082 72 43 0 chr4 129081242 129081381 -73246966 - MER51B LTR ERV1 -232 145 1 1511 96 27 14 chr4 129081606 129081826 -73246521 + AluY SINE Alu 88 310 -1 32 26 0 0 chr4 129081889 129081928 -73246419 + AT_rich Low_complexity Low_complexity 1 39 0 237 316 25 0 chr4 129082289 129082368 -73245979 - L2 LINE L2 -2 3270 3190 2414 88 0 0 chr4 129082383 129082690 -73245657 - AluY SINE Alu -4 307 1 4154 231 200 21 chr4 129083101 129085136 -73243211 + L1M3e LINE L1 1 2464 -4573 34781 107 18 12 chr4 129085145 129091251 -73237096 + L1PA7 LINE L1 11 6154 0 4050 201 47 34 chr4 129091289 129092906 -73235441 + L1MA9 LINE L1 2570 4165 -3566 2299 94 0 3 chr4 129092906 129093205 -73235142 + AluSq SINE Alu 1 298 -15 4050 201 47 34 chr4 129093205 129093321 -73235026 + L1MA9 LINE L1 4165 4278 -3453 1831 151 39 0 chr4 129093321 129093606 -73234741 + AluSx SINE Alu 1 296 -16 4050 201 47 34 chr4 129093606 129094153 -73234194 + L1MA9 LINE L1 4278 4816 -2915 1908 147 16 10 chr4 129094153 129094460 -73233887 + AluSx SINE Alu 1 309 -3 4050 201 47 34 chr4 129094460 129095137 -73233210 + L1MA9 LINE L1 4816 5483 -2248 2258 113 0 0 chr4 129095137 129095446 -73232901 + AluY SINE Alu 1 309 -2 4050 201 47 34 chr4 129095446 129095608 -73232739 + L1MA9 LINE L1 5483 5641 -2090 1871 104 0 0 chr4 129095608 129095857 -73232490 + AluSx SINE Alu 64 312 0 4050 201 47 34 chr4 129095857 129097655 -73230692 + L1MA9 LINE L1 5641 7730 -1 670 264 11 17 chr4 129097911 129098085 -73230262 + MIR3 SINE MIR 32 204 -4 237 337 33 0 chr4 129099870 129099962 -73228385 - MIR SINE MIR 0 262 168 243 200 55 0 chr4 129100574 129100629 -73227718 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 23 33 0 0 chr4 129102071 129102101 -73226246 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 129102498 129102520 -73225827 + AT_rich Low_complexity Low_complexity 1 22 0 307 268 25 32 chr4 129103179 129103336 -73225011 + L1MCc LINE L1 1368 1523 -4900 1732 208 115 7 chr4 129103382 129103791 -73224556 + MLT2B1 LTR ERVL 1 453 -67 235 106 76 0 chr4 129103803 129103869 -73224478 + (TA)n Simple_repeat Simple_repeat 2 72 0 540 285 103 35 chr4 129103904 129104574 -73223773 + L1MCc LINE L1 1607 2501 -4621 1596 136 0 0 chr4 129104691 129104933 -73223414 - L1M1 LINE L1 -576 5727 5486 241 314 24 0 chr4 129104989 129105113 -73223234 + L1MCc LINE L1 2760 2886 -4236 915 275 92 31 chr4 129105858 129106240 -73222107 + MLT2B2 LTR ERVL 61 465 -50 197 65 32 0 chr4 129106268 129106299 -73222048 + (TA)n Simple_repeat Simple_repeat 2 33 0 540 285 103 35 chr4 129106334 129107004 -73221343 + L1M4c LINE L1 1048 1942 -4621 1596 136 0 0 chr4 129107121 129107363 -73220984 - L1M1 LINE L1 -576 5727 5486 241 314 24 0 chr4 129107419 129107543 -73220804 + L1M4c LINE L1 2201 2327 -4236 6058 129 13 18 chr4 129108151 129108948 -73219399 + L1MA4A LINE L1 5265 6057 -246 2460 50 0 17 chr4 129108948 129109247 -73219100 - AluY SINE Alu -17 294 1 6058 129 13 18 chr4 129109247 129109490 -73218857 + L1MA4A LINE L1 6057 6300 -3 258 292 0 14 chr4 129109613 129109685 -73218662 + MER5A DNA MER1_type 59 129 -60 268 285 57 16 chr4 129111167 129111290 -73217057 + LTR67 LTR ERVL 424 551 -6 2112 116 0 69 chr4 129111748 129112110 -73216237 + MER1B DNA MER1_type 1 337 0 326 191 0 0 chr4 129112552 129112620 -73215727 + L1ME3A LINE L1 6098 6165 -5 23 0 0 0 chr4 129113013 129113036 -73215311 + AT_rich Low_complexity Low_complexity 1 23 0 4325 6 2 0 chr4 129113293 129113780 -73214567 + L1HS LINE L1 5665 6152 -3 21 57 0 0 chr4 129113782 129113817 -73214530 + AT_rich Low_complexity Low_complexity 1 35 0 2062 137 13 0 chr4 129114059 129114365 -73213982 + AluSx SINE Alu 1 310 -2 2254 247 175 8 chr4 129114864 129115663 -73212684 + L1 LINE L1 3330 4262 -1884 25 37 0 0 chr4 129115953 129115980 -73212367 + AT_rich Low_complexity Low_complexity 1 27 0 340 312 43 14 chr4 129116007 129116201 -73212146 - MIR SINE MIR -42 220 16 357 338 171 22 chr4 129117329 129117557 -73210790 - MLT1K LTR MaLR -285 303 42 365 319 167 22 chr4 129119698 129119974 -73208373 + HAL1 LINE L1 1085 1400 -1107 4709 157 47 42 chr4 129119988 129121544 -73206803 + L1MA7 LINE L1 4572 6132 -159 1138 193 87 44 chr4 129121544 129121865 -73206482 + MER44D DNA MER2_type 1 605 -4 4709 157 47 42 chr4 129121865 129122025 -73206322 + L1MA7 LINE L1 6132 6290 -1 5500 28 5 0 chr4 129122081 129122731 -73205616 + L1PA4 LINE L1 5502 6154 -1 312 111 0 0 chr4 129122854 129122899 -73205448 - Alu SINE Alu -8 294 250 257 281 0 16 chr4 129123221 129123285 -73205062 + CT-rich Low_complexity Low_complexity 2 64 0 655 251 26 21 chr4 129123285 129123476 -73204871 + LTR33 LTR ERVL 328 519 -2 322 295 113 30 chr4 129123590 129123919 -73204428 - HAL1 LINE L1 -1409 1098 743 31 26 0 0 chr4 129124562 129124600 -73203747 + AT_rich Low_complexity Low_complexity 1 38 0 209 213 0 0 chr4 129124728 129124775 -73203572 + T-rich Low_complexity Low_complexity 2 48 0 208 191 0 21 chr4 129124989 129125036 -73203311 + L2 LINE L2 3268 3313 0 546 276 25 10 chr4 129125659 129125855 -73202492 + L1M4 LINE L1 2374 2572 -3574 583 344 55 9 chr4 129125881 129126567 -73201780 - ERVL LTR ERVL -1900 3096 2907 262 243 0 14 chr4 129126687 129126757 -73201590 - L1MC4 LINE L1 -1333 6709 6641 1106 323 44 28 chr4 129126781 129127350 -73200997 - ERVL LTR ERVL -2267 2729 2152 2877 240 79 10 chr4 129127406 129127899 -73200448 - L1ME1 LINE L1 -15 6151 5693 2222 120 0 0 chr4 129127899 129128200 -73200147 - AluSc SINE Alu -8 301 1 2877 240 79 10 chr4 129128200 129129084 -73199263 - L1ME1 LINE L1 -473 5693 4679 21 0 0 0 chr4 129129843 129129864 -73198483 + AT_rich Low_complexity Low_complexity 1 21 0 262 292 53 94 chr4 129131044 129131215 -73197132 - MIR SINE MIR -70 192 29 2322 62 3 7 chr4 129131529 129131819 -73196528 - AluY SINE Alu -22 289 1 667 90 10 10 chr4 129131836 129131936 -73196411 - HY3 scRNA scRNA -1 100 1 400 286 177 11 chr4 129133487 129133662 -73194685 - MIR SINE MIR -24 238 35 697 189 30 0 chr4 129133749 129133881 -73194466 + AluJb SINE Alu 1 136 -176 2024 134 13 10 chr4 129133941 129134248 -73194099 - AluJo SINE Alu -4 308 1 2098 121 0 0 chr4 129134387 129134718 -73193629 - AluSx SINE Alu 0 333 3 24 0 0 0 chr4 129135081 129135105 -73193242 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 129135541 129135563 -73192784 + AT_rich Low_complexity Low_complexity 1 22 0 1366 256 109 54 chr4 129137027 129137616 -73190731 + Charlie2b DNA MER1_type 42 662 -2120 485 190 157 8 chr4 129137797 129137918 -73190429 + Charlie2a DNA MER1_type 1467 1605 -1257 27 78 0 29 chr4 129137921 129138023 -73190324 + AT_rich Low_complexity Low_complexity 1 99 0 205 239 0 0 chr4 129138339 129138385 -73189962 + G-rich Low_complexity Low_complexity 1 46 0 185 339 67 101 chr4 129140013 129140340 -73188007 + L2 LINE L2 2957 3272 0 611 52 10 42 chr4 129140407 129140503 -73187844 + L1PA4 LINE L1 6063 6155 0 1297 109 95 5 chr4 129141183 129141394 -73186953 - MER30 DNA MER1_type 0 230 1 1674 156 0 57 chr4 129142423 129142738 -73185609 + AluJo SINE Alu 1 297 -15 367 174 357 10 chr4 129142796 129142894 -73185453 + FLAM_C SINE Alu 2 133 0 274 336 29 0 chr4 129143906 129144010 -73184337 + Charlie8 DNA MER1_type 5 111 -2306 389 317 8 0 chr4 129144132 129144255 -73184092 - L3 LINE CR1 -1 1576 1453 1881 161 63 3 chr4 129144255 129144590 -73183757 + MER46B DNA MER2_type 1 230 -6 548 234 66 144 chr4 129144611 129144715 -73183632 + L2 LINE L2 2916 3027 -286 2615 203 10 4 chr4 129144715 129145232 -73183115 + MLT2B1 LTR ERVL 1 520 0 548 234 66 144 chr4 129145232 129145550 -73182797 + L2 LINE L2 3027 3305 -8 539 338 168 16 chr4 129145568 129146021 -73182326 - L3 LINE CR1 -136 1441 920 312 205 39 26 chr4 129146697 129146775 -73181572 + MIR SINE MIR 100 178 -84 460 301 66 7 chr4 129146915 129147051 -73181296 - MIR3 SINE MIR -35 173 30 193 341 179 26 chr4 129147070 129147343 -73181004 - L3 LINE CR1 -1226 351 37 231 235 61 10 chr4 129148111 129148209 -73180138 + LTR67 LTR ERVL 439 541 -16 453 157 0 34 chr4 129149041 129149130 -73179217 - LTR1 LTR ERV1 -699 86 1 3111 212 56 16 chr4 129149131 129149966 -73178381 - L1M4 LINE L1 -1804 4342 3474 852 259 27 27 chr4 129150848 129151072 -73177275 + MIR SINE MIR 6 229 -33 598 284 95 52 chr4 129151466 129151584 -73176763 - HAL1 LINE L1 -934 1573 1462 2255 77 0 11 chr4 129151584 129151903 -73176444 + AluY SINE Alu 1 316 0 598 284 95 52 chr4 129151903 129152340 -73176007 - HAL1 LINE L1 -1045 1462 993 800 63 10 3 chr4 129153753 129153867 -73174480 + L1PA11 LINE L1 6045 6163 0 261 324 65 32 chr4 129153871 129154056 -73174291 - HAL1 LINE L1 -1637 870 680 320 313 108 11 chr4 129154522 129154698 -73173649 + L1ME LINE L1 5650 5842 -279 786 279 133 28 chr4 129154912 129155310 -73173037 - MLT1L LTR MaLR -8 607 168 24 32 0 0 chr4 129155325 129155356 -73172991 + AT_rich Low_complexity Low_complexity 1 31 0 12445 181 56 11 chr4 129155358 129159015 -73169332 - L1MA4 LINE L1 -15 7704 3879 3320 188 53 11 chr4 129159013 129159671 -73168676 - L1MA4 LINE L1 -5262 2303 1618 * 284 344 0 0 chr4 129159671 129159761 -73168586 - MLT1L LTR MaLR -482 133 44 1206 133 128 0 chr4 129159813 129160009 -73168338 - MLT1D LTR MaLR 0 505 285 21 0 0 0 chr4 129160178 129160199 -73168148 + AT_rich Low_complexity Low_complexity 1 21 0 486 258 80 6 chr4 129160369 129160532 -73167815 - MER5B DNA MER1_type 0 178 4 834 267 24 5 chr4 129161012 129161218 -73167129 + MER63A DNA MER1_type 1 210 0 21 0 0 0 chr4 129161273 129161294 -73167053 + AT_rich Low_complexity Low_complexity 1 21 0 546 216 142 54 chr4 129161593 129161797 -73166550 - MIR SINE MIR -10 252 31 2667 88 47 10 chr4 129162330 129162716 -73165631 + MLT2A1 LTR ERVL 1 400 -44 657 239 0 0 chr4 129162719 129162899 -73165448 + (TG)n Simple_repeat Simple_repeat 1 180 0 377 93 0 0 chr4 129162901 129162955 -73165392 + MLT2A1 LTR ERVL 399 452 -1 477 225 47 8 chr4 129163671 129163800 -73164547 + MER112 DNA MER1_type 121 254 -6 212 399 14 14 chr4 129163800 129163943 -73164404 + L2 LINE L2 2742 2884 -430 338 291 25 0 chr4 129164008 129164087 -73164260 + L2 LINE L2 3186 3266 -6 513 269 175 6 chr4 129164624 129164784 -73163563 - MER5A DNA MER1_type 0 189 3 1437 225 20 3 chr4 129165515 129165870 -73162477 + L1M4 LINE L1 4599 4959 -1187 2044 113 23 17 chr4 129166133 129166434 -73161913 + AluSg SINE Alu 1 303 -7 2454 83 0 13 chr4 129167438 129167752 -73160595 + AluY SINE Alu 1 310 -1 1872 89 0 4 chr4 129168306 129168542 -73159805 + AluY SINE Alu 52 286 -25 32 0 0 0 chr4 129168542 129168574 -73159773 + AT_rich Low_complexity Low_complexity 1 32 0 744 11 56 45 chr4 129168574 129168752 -73159595 + (TA)n Simple_repeat Simple_repeat 1 180 0 629 124 0 0 chr4 129168961 129169058 -73159289 + AluY SINE Alu 208 304 -7 697 4 60 46 chr4 129169072 129169310 -73159037 + (TA)n Simple_repeat Simple_repeat 1 241 0 318 252 39 19 chr4 129169782 129169885 -73158462 + MIR SINE MIR 2 106 -156 983 279 138 36 chr4 129169913 129170390 -73157957 + MLT1H LTR MaLR 24 549 0 329 177 16 0 chr4 129170395 129170457 -73157890 + MIR SINE MIR 107 169 -93 2200 107 0 10 chr4 129172636 129172946 -73155401 - AluSx SINE Alu 0 312 1 202 333 11 65 chr4 129174610 129174703 -73153644 - MIR SINE MIR -152 110 23 306 289 160 85 chr4 129175475 129175862 -73152485 - REP3 LTR ERV -44 518 103 2375 156 16 14 chr4 129176022 129176465 -73151882 - L1MB4 LINE L1 0 6180 5737 655 264 67 28 chr4 129176486 129176740 -73151607 + MLT1K LTR MaLR 322 585 -3 231 336 45 9 chr4 129177692 129177802 -73150545 - L3b LINE CR1 -359 1224 1111 232 204 75 86 chr4 129177945 129178038 -73150309 - MIR SINE MIR -1 261 170 198 173 0 115 chr4 129178071 129178123 -73150224 + MER5B DNA MER1_type 1 46 -132 640 219 28 39 chr4 129178151 129178329 -73150018 + MER5B DNA MER1_type 1 176 -2 358 284 17 26 chr4 129178398 129178514 -73149833 + MARNA DNA Mariner 90 204 -382 595 344 80 4 chr4 129178775 129179051 -73149296 + L2 LINE L2 95 391 -2923 543 262 34 0 chr4 129180183 129180332 -73148015 + MER63A DNA MER1_type 46 199 -11 290 250 48 24 chr4 129180344 129180428 -73147919 - MER5B DNA MER1_type -91 87 2 234 295 0 0 chr4 129180491 129180552 -73147795 - MER5A DNA MER1_type -1 188 128 271 265 170 27 chr4 129180838 129180985 -73147362 + MER102b DNA MER1_type 161 328 -13 27 0 0 0 chr4 129181015 129181042 -73147305 + AT_rich Low_complexity Low_complexity 1 27 0 360 314 41 54 chr4 129181044 129181286 -73147061 + L2 LINE L2 2817 3055 -217 21 36 0 0 chr4 129181456 129181484 -73146863 + AT_rich Low_complexity Low_complexity 1 28 0 2296 79 0 35 chr4 129182023 129182338 -73146009 - AluY SINE Alu -7 304 1 645 31 10 20 chr4 129183766 129183864 -73144483 + (GA)n Simple_repeat Simple_repeat 2 98 0 5857 218 67 45 chr4 129185135 129186542 -73141805 - L1MD2 LINE L1 -403 5956 4581 2240 124 25 25 chr4 129186542 129186906 -73141441 + THE1B LTR MaLR 1 364 0 5857 218 67 45 chr4 129186906 129188525 -73139822 - L1MD2 LINE L1 -1778 4581 2681 312 294 35 0 chr4 129189413 129189498 -73138849 - L2 LINE L2 -8 3264 3177 1360 239 21 15 chr4 129189564 129189898 -73138449 + MER58B DNA MER1_type 4 339 -2 181 163 41 0 chr4 129190939 129190988 -73137359 + (TATATG)n Simple_repeat Simple_repeat 1 51 0 4592 197 33 26 chr4 129191178 129193096 -73135251 + L1MB2 LINE L1 4240 6164 -7 656 266 10 26 chr4 129193144 129193336 -73135011 - MIR SINE MIR -62 200 12 2287 102 76 15 chr4 129194702 129195045 -73133302 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr4 129195375 129195397 -73132950 + AT_rich Low_complexity Low_complexity 1 22 0 397 281 0 0 chr4 129195666 129195762 -73132585 - MER5B DNA MER1_type 0 178 83 233 235 0 0 chr4 129197217 129197268 -73131079 + MIR SINE MIR 200 250 -12 420 283 201 0 chr4 129197326 129197510 -73130837 + MIR SINE MIR 2 222 -40 484 318 11 6 chr4 129197626 129197802 -73130545 - MER5B DNA MER1_type 0 178 2 241 248 229 18 chr4 129199110 129199219 -73129128 + MIR SINE MIR 36 167 -95 3631 53 0 0 chr4 129199225 129199674 -73128673 + L1PA6 LINE L1 5703 6151 -3 3636 195 27 59 chr4 129200065 129201066 -73127281 + LTR5 LTR ERVK 1 969 0 2365 97 0 3 chr4 129202669 129202980 -73125367 - AluSg SINE Alu 0 310 1 28 0 0 0 chr4 129203043 129203071 -73125276 + AT_rich Low_complexity Low_complexity 1 28 0 374 237 43 11 chr4 129204315 129204408 -73123939 + MER5B DNA MER1_type 83 178 0 21 0 0 0 chr4 129204682 129204703 -73123644 + AT_rich Low_complexity Low_complexity 1 21 0 615 328 97 48 chr4 129204807 129205207 -73123140 - L1 LINE L1 -2195 3951 3572 2432 115 22 3 chr4 129205207 129205564 -73122783 + THE1B LTR MaLR 1 364 0 615 328 97 48 chr4 129205564 129206027 -73122320 - L1 LINE L1 -2574 3572 3045 743 307 67 57 chr4 129206074 129206101 -73122246 - L1 LINE L1 -3306 2840 2815 539 90 13 0 chr4 129206101 129206179 -73122168 + MADE1 DNA Mariner 2 80 0 743 307 67 57 chr4 129206179 129206236 -73122111 - L1 LINE L1 -3331 2815 2760 2717 220 34 18 chr4 129206236 129206850 -73121497 - MLT1E2 LTR MaLR -2 624 1 743 307 67 57 chr4 129206850 129206981 -73121366 - L1 LINE L1 -3386 2760 2632 360 0 0 0 chr4 129206981 129207021 -73121326 + (CA)n Simple_repeat Simple_repeat 2 41 0 743 307 67 57 chr4 129207021 129207490 -73120857 - L1 LINE L1 -3514 2632 2147 2221 182 32 5 chr4 129207981 129208388 -73119959 - MSTB1 LTR MaLR 0 432 15 307 315 40 34 chr4 129208422 129208571 -73119776 - HAL1b LINE L1 -912 436 287 21 0 0 0 chr4 129208724 129208745 -73119602 + AT_rich Low_complexity Low_complexity 1 21 0 14045 203 39 10 chr4 129208821 129209179 -73119168 - L1PB1 LINE L1 -1 6866 6520 522 60 36 0 chr4 129209179 129209262 -73119085 + (TA)n Simple_repeat Simple_repeat 1 86 0 14045 203 39 10 chr4 129209262 129210238 -73118109 - L1PB1 LINE L1 -347 6520 5574 2128 132 0 0 chr4 129210238 129210533 -73117814 - AluSx SINE Alu -17 295 1 14045 203 39 10 chr4 129210533 129215700 -73112647 - L1PB1 LINE L1 -1293 5574 6 2701 128 37 61 chr4 129215745 129215943 -73112404 - L1MA5 LINE L1 -5 6295 6094 3019 138 39 0 chr4 129215943 129216452 -73111895 - L1PB4 LINE L1 -2 6154 5626 2701 128 37 61 chr4 129216452 129216793 -73111554 - L1MA5 LINE L1 -206 6094 5769 12228 198 72 7 chr4 129216804 129217172 -73111175 - L1PB1 LINE L1 -1 6866 6523 255 61 0 0 chr4 129217172 129217205 -73111142 + (CA)n Simple_repeat Simple_repeat 2 34 0 12228 198 72 7 chr4 129217205 129223154 -73105193 - L1PB1 LINE L1 -344 6523 6 5459 164 27 38 chr4 129223160 129224811 -73103536 - L1M2 LINE L1 -515 5785 4147 587 246 112 107 chr4 129225521 129225809 -73102538 - MLT1H LTR MaLR -1 566 314 2184 82 3 10 chr4 129225809 129226115 -73102232 - AluY SINE Alu -7 304 1 587 246 112 107 chr4 129226115 129226429 -73101918 - MLT1H LTR MaLR -253 314 3 264 172 21 11 chr4 129226805 129226898 -73101449 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 353 299 238 7 chr4 129227890 129228037 -73100310 + MER5A DNA MER1_type 9 189 0 221 261 0 43 chr4 129228342 129228411 -73099936 - L2 LINE L2 -207 3065 3000 210 337 30 20 chr4 129228719 129228820 -73099527 + MIR SINE MIR 161 262 0 21 36 0 0 chr4 129228830 129228858 -73099489 + AT_rich Low_complexity Low_complexity 1 28 0 1629 105 56 32 chr4 129229259 129229435 -73098912 + L1MA3 LINE L1 6014 6184 -121 1803 156 75 29 chr4 129229435 129229782 -73098565 + THE1B LTR MaLR 1 363 -1 11592 106 2 0 chr4 129229782 129231359 -73096988 + THE1B-int LTR MaLR 1 1580 0 1873 153 75 29 chr4 129231360 129231707 -73096640 + THE1B LTR MaLR 2 364 0 1629 105 56 32 chr4 129231707 129231812 -73096535 + L1MA3 LINE L1 6183 6305 0 5931 154 36 10 chr4 129231818 129233759 -73094588 + L1MA4A LINE L1 4318 6296 -7 233 306 83 0 chr4 129233908 129234016 -73094331 - MIR SINE MIR -68 140 24 2268 93 0 0 chr4 129234960 129235279 -73093068 - AluY SINE Alu 0 311 2 1006 300 87 24 chr4 129236723 129236954 -73091393 - L2 LINE L2 0 3313 3098 2075 100 4 11 chr4 129236954 129237261 -73091086 + AluSc SINE Alu 1 305 0 1006 300 87 24 chr4 129237261 129237781 -73090566 - L2 LINE L2 -215 3098 2507 1411 203 105 47 chr4 129237781 129238249 -73090098 + MLT1D LTR MaLR 1 363 -2 966 278 40 67 chr4 129238249 129238547 -73089800 - L2 LINE L2 -1022 2292 2009 3107 115 2 0 chr4 129238547 129238991 -73089356 + L1PB3 LINE L1 5710 6154 0 966 278 40 67 chr4 129238991 129239142 -73089205 - L2 LINE L2 -1305 2009 1855 3251 127 14 2 chr4 129239550 129240070 -73088277 - L1M1 LINE L1 -524 5781 5256 4297 96 17 12 chr4 129240084 129240675 -73087672 + MER61-int LTR ERV1 4037 4630 -587 10423 176 85 36 chr4 129240675 129240723 -73087624 - L1M4 LINE L1 -3623 3225 3181 492 99 0 0 chr4 129240723 129240794 -73087553 + (TA)n Simple_repeat Simple_repeat 2 72 0 10423 176 85 36 chr4 129240794 129241101 -73087246 - L1M4 LINE L1 -3667 3181 2890 1695 149 6 73 chr4 129241101 129241417 -73086930 - AluSx SINE Alu -17 295 1 10423 176 85 36 chr4 129241417 129243564 -73084783 - L1M4 LINE L1 -3958 2890 554 3840 91 33 0 chr4 129244595 129245145 -73083202 - L1P3 LINE L1 -3827 2634 2067 * 4153 112 38 5 chr4 129245142 129245891 -73082456 - L1P3 LINE L1 -4600 1861 1095 * 21411 85 5 9 chr4 129245887 129249623 -73078724 + L1PA8 LINE L1 2321 6044 -128 2754 193 23 82 chr4 129249646 129250522 -73077825 - LTR5 LTR ERVK -145 824 1 184 299 104 26 chr4 129250525 129250602 -73077745 - MIR SINE MIR -160 102 20 1116 148 137 63 chr4 129251149 129251500 -73076847 - LTR37A LTR ERV1 -1 425 49 909 220 71 73 chr4 129252005 129252524 -73075823 - MER113 DNA MER1_type? -3 518 1 281 289 37 59 chr4 129252529 129252664 -73075683 + MIR3 SINE MIR 15 146 -62 876 258 35 29 chr4 129257238 129257552 -73070795 - MER46C DNA MER2_type -22 316 1 285 332 134 41 chr4 129257552 129258514 -73069833 + L2 LINE L2 2211 3257 -15 1902 157 3 7 chr4 129259424 129259724 -73068623 - AluJb SINE Alu -13 299 1 331 285 93 29 chr4 129260924 129261096 -73067251 + MIR3 SINE MIR 3 185 -23 2354 190 2 70 chr4 129261571 129262113 -73066234 + MLT1D LTR MaLR 1 505 0 676 176 72 8 chr4 129263188 129263313 -73065034 - FLAM_C SINE Alu 0 133 1 399 278 0 0 chr4 129263421 129263518 -73064829 + MIR SINE MIR 118 214 -48 345 284 210 1 chr4 129263654 129263818 -73064529 - MIR SINE MIR -28 234 40 690 308 47 8 chr4 129265428 129265662 -73062685 + MIR SINE MIR 8 250 -12 22 35 0 0 chr4 129265670 129265699 -73062648 + AT_rich Low_complexity Low_complexity 1 29 0 678 233 92 6 chr4 129265800 129265963 -73062384 + MER5B DNA MER1_type 1 177 -1 439 276 171 26 chr4 129265980 129266132 -73062215 + MER5A DNA MER1_type 9 182 -7 455 309 128 32 chr4 129266702 129267045 -73061302 - MLT1I LTR MaLR -4 405 30 425 320 58 35 chr4 129267406 129267834 -73060513 - HAL1 LINE L1 -849 1658 1221 358 303 60 32 chr4 129267862 129268047 -73060300 - L1ME LINE L1 -5107 963 831 1916 204 82 111 chr4 129269227 129269308 -73059039 + L1MC4a LINE L1 6900 6982 -826 198 71 0 0 chr4 129269308 129269336 -73059011 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1916 204 82 111 chr4 129269336 129270048 -73058299 + L1MC4a LINE L1 6982 7670 -138 1270 231 90 20 chr4 129270048 129270438 -73057909 - LTR52 LTR ERVL 0 421 5 718 200 7 0 chr4 129270441 129270586 -73057761 + L1MD3 LINE L1 7837 7982 -13 2094 92 20 0 chr4 129270650 129270945 -73057402 - L1PA10 LINE L1 0 6168 5868 472 70 0 0 chr4 129270945 129271002 -73057345 + L1PA10 LINE L1 5820 5876 -287 4338 74 52 16 chr4 129271093 129272170 -73056177 - MER11A LTR ERVK 0 1266 1 2250 149 35 56 chr4 129272194 129272710 -73055637 - MLT1D LTR MaLR 0 505 1 468 279 38 44 chr4 129272730 129272888 -73055459 + L1MEd LINE L1 253 409 -5710 3348 185 136 41 chr4 129272908 129273912 -73054435 - L1MC4 LINE L1 -4 8038 6940 532 309 85 44 chr4 129273978 129274755 -73053592 + L1MEd LINE L1 449 1257 -4862 281 283 100 0 chr4 129274871 129274991 -73053356 - MIR SINE MIR 0 262 131 547 317 29 8 chr4 129275028 129275271 -73053076 - HAL1 LINE L1 -1073 1434 1187 205 150 0 50 chr4 129275440 129275480 -73052867 + (CATATA)n Simple_repeat Simple_repeat 3 40 0 21 0 0 0 chr4 129275681 129275702 -73052645 + AT_rich Low_complexity Low_complexity 1 21 0 358 323 75 53 chr4 129275833 129276059 -73052288 + HAL1 LINE L1 1113 1343 -1164 21 57 0 0 chr4 129276421 129276456 -73051891 + AT_rich Low_complexity Low_complexity 1 35 0 386 248 132 89 chr4 129276501 129276804 -73051543 + MLT1I LTR MaLR 9 324 -85 6661 123 51 33 chr4 129276965 129278172 -73050175 - Tigger3b DNA MER2_type -2 1229 1 409 303 82 56 chr4 129278220 129278576 -73049771 + L1ME4a LINE L1 4909 5273 -873 587 266 93 68 chr4 129278757 129279303 -73049044 + L1ME4a LINE L1 5420 5979 -142 308 322 62 40 chr4 129279648 129279825 -73048522 + MIR SINE MIR 53 233 -29 2372 121 118 12 chr4 129281037 129281442 -73046905 - MER83 LTR ERV1 0 448 1 25 51 0 0 chr4 129281451 129281490 -73046857 + AT_rich Low_complexity Low_complexity 1 39 0 1702 196 84 18 chr4 129281689 129282127 -73046220 + MLT1C LTR MaLR 1 467 0 344 265 65 71 chr4 129282141 129282311 -73046036 + L1MEd LINE L1 9 177 -5942 33 25 0 0 chr4 129282327 129282367 -73045980 + AT_rich Low_complexity Low_complexity 1 40 0 2479 156 5 43 chr4 129282839 129283281 -73045066 - L1M1 LINE L1 -5968 1597 1173 310 226 20 41 chr4 129283769 129283915 -73044432 + (TCTA)n Simple_repeat Simple_repeat 4 146 0 * 348 222 7 28 chr4 129283883 129284027 -73044320 + (TA)n Simple_repeat Simple_repeat 1 141 0 216 298 130 30 chr4 129284510 129284641 -73043706 - L3 LINE CR1 -1005 572 429 310 193 96 12 chr4 129284774 129284857 -73043490 + L1MEd LINE L1 2249 2338 -3791 548 293 80 23 chr4 129284955 129285111 -73043236 + L1MB7 LINE L1 4176 4322 -1840 279 0 0 0 chr4 129285111 129285142 -73043205 + (TG)n Simple_repeat Simple_repeat 1 31 0 548 293 80 23 chr4 129285142 129285391 -73042956 + L1MB7 LINE L1 4322 4555 -1607 228 35 0 0 chr4 129285391 129285420 -73042927 + (TG)n Simple_repeat Simple_repeat 1 29 0 548 293 80 23 chr4 129285420 129286280 -73042067 + L1MB7 LINE L1 4555 5576 -586 1000 279 56 3 chr4 129286287 129286610 -73041737 + L1ME3 LINE L1 5821 6160 -2 22 35 0 0 chr4 129286654 129286683 -73041664 + AT_rich Low_complexity Low_complexity 1 29 0 1224 204 32 21 chr4 129286743 129287111 -73041236 - L1MA9 LINE L1 -31 6281 5798 294 29 0 0 chr4 129287111 129287146 -73041201 + (TC)n Simple_repeat Simple_repeat 2 36 0 207 0 0 0 chr4 129287145 129287168 -73041179 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 756 309 89 51 chr4 129287613 129288141 -73040206 + L2 LINE L2 2737 3267 -5 2469 169 40 4 chr4 129288292 129288771 -73039576 + L1MB7 LINE L1 5689 6184 0 2501 150 24 7 chr4 129290819 129291238 -73037109 - MSTB LTR MaLR 0 426 1 3388 155 27 22 chr4 129291243 129291864 -73036483 - MSTB-int LTR MaLR -5 1646 1023 1732 192 18 12 chr4 129291867 129292206 -73036141 - MER61A LTR ERV1 0 343 3 2458 72 15 12 chr4 129292213 129292548 -73035799 - MER61A-int LTR ERV1 -4 5213 4878 * 4961 76 2 0 chr4 129292545 129293166 -73035181 + HERVL LTR ERVL 4320 4941 -713 525 220 17 35 chr4 129293266 129293439 -73034908 + L1MD3 LINE L1 7810 7979 -16 900 241 43 0 chr4 129293980 129294187 -73034160 - MER58A DNA MER1_type -8 216 1 426 308 0 17 chr4 129294227 129294344 -73034003 - Zaphod DNA AcHobo -3916 115 1 271 310 109 11 chr4 129294385 129294569 -73033778 + L2 LINE L2 3112 3313 0 572 313 104 13 chr4 129294967 129295197 -73033150 - MIR SINE MIR 0 262 12 3896 163 27 3 chr4 129295613 129296784 -73031563 + L1M2 LINE L1 4577 5774 -538 5501 96 1 0 chr4 129296791 129297583 -73030764 - L1P3 LINE L1 -2208 3938 3146 10340 79 7 10 chr4 129297584 129299140 -73029207 + L1P3 LINE L1 3942 5501 -653 6068 142 26 8 chr4 129299413 129300993 -73027354 - L1PB2 LINE L1 -2 6149 4542 474 287 118 28 chr4 129301780 129302034 -73026313 + HAL1b LINE L1 296 572 -776 641 257 83 43 chr4 129302042 129302439 -73025908 + HAL1b LINE L1 623 1035 -313 * 1619 149 25 34 chr4 129302438 129302759 -73025588 - L1MA8 LINE L1 -191 6100 5783 327 266 0 28 chr4 129302759 129302902 -73025445 + (TG)n Simple_repeat Simple_repeat 1 139 0 1476 153 9 36 chr4 129302902 129303197 -73025150 - L1MD1 LINE L1 -401 5841 5556 447 137 22 144 chr4 129303183 129303322 -73025025 + L1MA8 LINE L1 6097 6218 -73 * 25 51 0 0 chr4 129303435 129303474 -73024873 + AT_rich Low_complexity Low_complexity 1 39 0 237 65 0 0 chr4 129303483 129303514 -73024833 + (TG)n Simple_repeat Simple_repeat 2 32 0 232 347 46 36 chr4 129303746 129303912 -73024435 - L2 LINE L2 -1317 1997 1827 3007 173 50 9 chr4 129303912 129304490 -73023857 - MER7C DNA MER2_type 0 602 1 232 347 46 36 chr4 129304490 129304519 -73023828 - L2 LINE L2 -1487 1827 1800 188 355 98 49 chr4 129304878 129305205 -73023142 - L3 LINE CR1 -1157 420 78 25 0 0 0 chr4 129305470 129305495 -73022852 + AT_rich Low_complexity Low_complexity 1 25 0 368 127 0 0 chr4 129305504 129305559 -73022788 + MSTA LTR MaLR 1 55 -373 331 339 31 0 chr4 129305562 129305692 -73022655 + MIR SINE MIR 53 186 -76 235 256 0 0 chr4 129306822 129306865 -73021482 + L2 LINE L2 3207 3249 -23 7983 219 19 9 chr4 129306865 129308795 -73019552 + L1 LINE L1 3291 5238 -908 3026 74 62 2 chr4 129308796 129308836 -73019511 - MLT2A1 LTR ERVL 0 444 408 378 61 0 0 chr4 129308836 129308885 -73019462 + (TA)n Simple_repeat Simple_repeat 1 49 0 3026 74 62 2 chr4 129308885 129309261 -73019086 - MLT2A1 LTR ERVL -36 408 3 1072 98 7 0 chr4 129309263 129309416 -73018931 - HERVL-A1 LTR ERVL 0 5654 5501 3562 199 24 12 chr4 129309516 129310190 -73018157 - L1M1 LINE L1 -6842 723 42 14571 174 27 114 chr4 129310191 129311088 -73017259 - L1PA15-16 LINE L1 -1752 5097 4123 2272 69 0 7 chr4 129311088 129311410 -73016937 - AluY SINE Alu 0 311 1 14571 174 27 114 chr4 129311410 129316089 -73012258 - L1PA15-16 LINE L1 -2726 4123 1 292 185 31 15 chr4 129316555 129316620 -73011727 + MLT1I LTR MaLR 325 390 -19 435 288 84 9 chr4 129316630 129316869 -73011478 + L1MC/D LINE L1 5551 5806 -362 279 0 0 0 chr4 129317044 129317075 -73011272 + (CA)n Simple_repeat Simple_repeat 2 32 0 244 257 229 7 chr4 129317638 129317778 -73010569 - MIR SINE MIR 0 262 92 358 209 9 9 chr4 129320778 129320883 -73007464 + CT-rich Low_complexity Low_complexity 4 108 0 198 0 0 0 chr4 129370970 129370992 -72957355 + (TTA)n Simple_repeat Simple_repeat 3 24 0 4852 30 2 0 chr4 129370992 129371555 -72956792 - L1PA5 LINE L1 -18 6136 5573 253 247 82 36 chr4 129371555 129371749 -72956598 - L1M4 LINE L1 -1607 4539 4337 304 204 140 0 chr4 129372094 129372187 -72956160 + L1MD3 LINE L1 7879 7984 -11 2280 220 66 3 chr4 129372201 129372434 -72955913 - L1MD2 LINE L1 -448 5911 5694 1642 110 13 0 chr4 129372434 129372662 -72955685 - AluSq SINE Alu -9 304 74 2280 220 66 3 chr4 129372662 129373105 -72955242 - L1MD2 LINE L1 -665 5694 5193 198 303 81 10 chr4 129373259 129373358 -72954989 + L2 LINE L2 2669 2774 -540 2548 40 0 7 chr4 129373747 129374049 -72954298 + AluY SINE Alu 1 300 -11 241 303 40 0 chr4 129374391 129374467 -72953880 + MLT1J LTR MaLR 321 399 -112 299 432 26 26 chr4 129374683 129374912 -72953435 - L2 LINE L2 -2 3270 3042 316 261 11 0 chr4 129374915 129375007 -72953340 + L2 LINE L2 1890 1982 -1332 1450 273 63 27 chr4 129375010 129375604 -72952743 + MLT1G LTR MaLR 4 584 -6 618 297 65 4 chr4 129375606 129375835 -72952512 + L2 LINE L2 2037 2279 -1035 758 139 17 17 chr4 129375848 129376028 -72952319 + CT-rich Low_complexity Low_complexity 1 180 0 2228 112 7 0 chr4 129376028 129376333 -72952014 - AluSq SINE Alu 0 313 7 6280 182 26 12 chr4 129376435 129377431 -72950916 - L1M3 LINE L1 -358 5810 4774 2203 117 0 3 chr4 129377431 129377729 -72950618 - AluSx SINE Alu -15 297 1 6280 182 26 12 chr4 129377729 129378537 -72949810 - L1M3 LINE L1 -1394 4774 3979 458 198 25 25 chr4 129378647 129378768 -72949579 + L1MC3 LINE L1 7653 7773 -12 312 241 128 38 chr4 129379453 129379586 -72948761 + L2 LINE L2 2174 2318 -996 254 100 0 0 chr4 129379976 129380016 -72948331 - L1MA9 LINE L1 -6 6306 6267 281 290 30 20 chr4 129380843 129380943 -72947404 - MER5A DNA MER1_type -63 126 26 2183 84 4 11 chr4 129382392 129382691 -72945656 + AluSx SINE Alu 11 307 0 202 143 0 24 chr4 129382729 129382771 -72945576 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 1635 156 16 44 chr4 129383202 129383517 -72944830 + AluJo SINE Alu 1 306 -6 900 237 47 12 chr4 129383537 129383790 -72944557 + MLT2B1 LTR ERVL 253 514 -6 2232 222 91 62 chr4 129383826 129384610 -72943737 - MER21B LTR ERV1 -57 806 1 663 333 77 5 chr4 129384814 129385411 -72942936 - L1M4 LINE L1 -1908 4238 3599 1223 181 87 50 chr4 129386854 129387175 -72941172 + MLT1A1 LTR MaLR 1 333 -32 2257 94 7 0 chr4 129387600 129387887 -72940460 + AluSg SINE Alu 1 289 -21 36 23 0 0 chr4 129387986 129388029 -72940318 + AT_rich Low_complexity Low_complexity 1 43 0 1537 61 0 33 chr4 129388029 129388242 -72940105 - L1PA5 LINE L1 -8 6146 5941 28 0 0 0 chr4 129388310 129388338 -72940009 + AT_rich Low_complexity Low_complexity 1 28 0 2178 121 0 10 chr4 129389022 129389329 -72939018 - AluSx SINE Alu -6 306 3 267 292 104 10 chr4 129389474 129389570 -72938777 - MIR SINE MIR -40 222 118 558 293 62 26 chr4 129390598 129390871 -72937476 - L2 LINE L2 -802 2512 2230 1038 179 0 77 chr4 129390910 129391144 -72937203 + MER20 DNA MER1_type 4 219 0 610 260 42 16 chr4 129391536 129391728 -72936619 + LTR67 LTR ERVL 352 548 -9 290 217 0 0 chr4 129391738 129391798 -72936549 + MLT1K LTR MaLR 523 582 -6 1580 182 71 7 chr4 129391885 129392165 -72936182 + AluJb SINE Alu 1 298 -14 1746 209 66 36 chr4 129392456 129392901 -72935446 + MER31A LTR ERV1 1 656 -5 2391 93 0 3 chr4 129393454 129393766 -72934581 + AluY SINE Alu 1 311 0 344 186 127 0 chr4 129393949 129394067 -72934280 + L1M4 LINE L1 3043 3175 -2971 * 396 295 14 0 chr4 129394063 129394202 -72934145 + L1MA10 LINE L1 6164 6304 -30 354 312 52 17 chr4 129394222 129394439 -72933908 + L1ME4a LINE L1 5495 5717 -453 300 53 0 0 chr4 129394587 129394625 -72933722 + (TG)n Simple_repeat Simple_repeat 1 38 0 2003 85 8 0 chr4 129395035 129395293 -72933054 + AluSp SINE Alu 1 260 -53 416 19 19 0 chr4 129395293 129395346 -72933001 + (TAA)n Simple_repeat Simple_repeat 1 54 0 240 281 56 22 chr4 129395544 129395633 -72932714 - L2 LINE L2 0 3272 3181 1726 87 25 0 chr4 129395861 129396103 -72932244 + L1PA11 LINE L1 5927 6174 0 22 35 0 0 chr4 129396865 129396894 -72931453 + AT_rich Low_complexity Low_complexity 1 29 0 6870 56 62 19 chr4 129396927 129397842 -72930505 - L1PA6 LINE L1 -1 6153 5235 364 277 108 22 chr4 129398650 129398964 -72929383 + L1ME4a LINE L1 5770 6110 -11 1291 188 75 28 chr4 129398971 129399253 -72929094 - AluJo SINE Alu -7 295 1 333 275 58 0 chr4 129399494 129399614 -72928733 + L1ME4a LINE L1 5984 6110 -11 493 156 25 25 chr4 129399912 129400034 -72928313 + L1MA4A LINE L1 6000 6121 -182 322 211 22 0 chr4 129400039 129400129 -72928218 + L1MA4A LINE L1 6189 6280 -23 387 316 151 29 chr4 129401310 129401655 -72926692 + HAL1b LINE L1 309 695 -653 315 255 57 75 chr4 129401770 129401876 -72926471 - L2 LINE L2 0 3272 3169 1426 119 10 0 chr4 129402204 129402397 -72925950 + AluSq SINE Alu 2 196 -117 294 320 147 20 chr4 129402570 129402655 -72925692 - MIR SINE MIR -21 241 168 1826 160 34 3 chr4 129402655 129402949 -72925398 - AluSx SINE Alu -9 303 1 294 320 147 20 chr4 129402949 129403060 -72925287 - MIR SINE MIR -94 168 20 406 299 18 0 chr4 129403504 129403644 -72924703 - MIR SINE MIR -62 146 10 271 366 195 8 chr4 129403654 129403911 -72924436 - L2 LINE L2 -18 3254 2950 6690 80 0 0 chr4 129404041 129404263 -72924084 - L1PA8 LINE L1 0 6172 5951 2336 78 9 50 chr4 129404263 129404584 -72923763 - AluY SINE Alu -3 308 1 6690 80 0 0 chr4 129404584 129405752 -72922595 - L1PA8 LINE L1 -220 5952 4793 255 211 0 29 chr4 129405866 129405970 -72922377 + (TA)n Simple_repeat Simple_repeat 2 102 0 530 187 190 10 chr4 129406059 129406217 -72922130 + MER20 DNA MER1_type 36 219 0 35 24 0 0 chr4 129406936 129406978 -72921369 + AT_rich Low_complexity Low_complexity 1 42 0 279 187 27 13 chr4 129407346 129407421 -72920926 + MER112 DNA MER1_type 94 169 -91 352 217 22 11 chr4 129407457 129407549 -72920798 - MER94 DNA DNA -2 132 40 19973 91 4 3 chr4 129407707 129411357 -72916990 + L1PA7 LINE L1 2511 6153 -1 2199 124 7 0 chr4 129411654 129411953 -72916394 + AluSx SINE Alu 1 301 -11 977 305 77 2 chr4 129413057 129413592 -72914755 + L1ME3A LINE L1 5306 5880 -290 229 268 14 14 chr4 129413809 129413880 -72914467 + (TA)n Simple_repeat Simple_repeat 2 72 0 213 280 40 0 chr4 129413890 129413940 -72914407 + L2 LINE L2 3209 3260 -12 5098 133 30 21 chr4 129414038 129414269 -72914078 + L1MC1 LINE L1 5376 5604 -729 2214 113 137 11 chr4 129414269 129414649 -72913698 + MSTA LTR MaLR 1 428 0 5098 133 30 21 chr4 129414649 129415361 -72912986 + L1MC1 LINE L1 5604 6327 -6 368 274 116 44 chr4 129415362 129415911 -72912436 - L1ME3A LINE L1 -240 5922 5303 714 247 115 62 chr4 129415919 129416815 -72911532 - L1ME3A LINE L1 -894 5252 4310 711 276 69 37 chr4 129417003 129417579 -72910768 - L1ME3A LINE L1 -1905 4241 3649 309 233 81 12 chr4 129417629 129417715 -72910632 - L1ME3A LINE L1 -2608 3538 3447 29 0 0 0 chr4 129417888 129417917 -72910430 + AT_rich Low_complexity Low_complexity 1 29 0 267 280 100 3 chr4 129418089 129418199 -72910148 + MIR3 SINE MIR 59 155 -53 1009 179 14 14 chr4 129418342 129418554 -72909793 - L1PB4 LINE L1 -7 6149 5938 1538 153 128 0 chr4 129418554 129418858 -72909489 - L1MC1 LINE L1 -6 6327 5981 327 288 22 50 chr4 129419069 129419208 -72909139 - L2 LINE L2 -220 3052 2918 208 331 100 38 chr4 129419237 129419397 -72908950 - L2 LINE L2 -460 2854 2685 276 298 44 0 chr4 129419819 129419933 -72908414 + LTR67 LTR ERVL 432 550 -7 1183 120 6 0 chr4 129420384 129420551 -72907796 + AluSg/x SINE Alu 130 297 -13 297 269 35 35 chr4 129421276 129421421 -72906926 - LTR67 LTR ERVL -410 147 3 365 323 40 30 chr4 129422061 129422262 -72906085 - LTR67 LTR ERVL -8 549 347 10118 149 27 76 chr4 129423103 129425415 -72902932 - L1P LINE L1 -3935 2211 12 550 198 0 0 chr4 129425423 129425529 -72902818 - MLT1B LTR MaLR -209 181 76 2240 115 24 0 chr4 129426778 129427074 -72901273 + AluSx SINE Alu 1 303 -9 215 100 0 25 chr4 129427101 129427141 -72901206 + (TATG)n Simple_repeat Simple_repeat 4 42 0 199 400 76 0 chr4 129427384 129427489 -72900858 + L2 LINE L2 3159 3271 -1 767 98 35 98 chr4 129427504 129427677 -72900670 + MER34B LTR ERV1 4 165 -400 1553 150 4 4 chr4 129427682 129427955 -72900392 + MER34B LTR ERV1 273 545 -20 1384 318 14 0 chr4 129428058 129428542 -72899805 + ERVL LTR ERVL 2193 2683 -3081 342 122 0 0 chr4 129428607 129428679 -72899668 - AluSp/q SINE Alu 0 308 237 11937 128 62 16 chr4 129429097 129429420 -72898927 + Tigger1 DNA MER2_type 22 329 -2089 240 35 0 0 chr4 129429420 129429449 -72898898 + (TC)n Simple_repeat Simple_repeat 2 30 0 11937 128 62 16 chr4 129429449 129430627 -72897720 + Tigger1 DNA MER2_type 329 1451 -967 1969 143 122 10 chr4 129430627 129431012 -72897335 + MSTA LTR MaLR 1 428 0 11937 128 62 16 chr4 129431012 129431420 -72896927 + Tigger1 DNA MER2_type 1451 1839 -579 1278 172 95 33 chr4 129431420 129431693 -72896654 + AluJo SINE Alu 3 292 -10 11937 128 62 16 chr4 129431693 129431915 -72896432 + Tigger1 DNA MER2_type 1839 2254 -164 1276 224 22 19 chr4 129431952 129432264 -72896083 + L1MC/D LINE L1 5315 5627 -2181 5555 56 7 12 chr4 129432475 129433239 -72895108 - L1P2 LINE L1 -1416 4730 3971 4496 60 40 13 chr4 129433235 129434124 -72894223 + L1P2 LINE L1 4740 5646 -508 * 514 234 59 103 chr4 129434853 129435126 -72893221 + MIR SINE MIR 2 262 0 2076 127 3 32 chr4 129435566 129435874 -72892473 + AluSp SINE Alu 1 299 -14 5388 92 21 9 chr4 129436028 129436842 -72891505 + L1PA13 LINE L1 5338 6161 -2 458 266 83 46 chr4 129437595 129437836 -72890511 + L1 LINE L1 4197 4446 -1700 1198 116 0 0 chr4 129437962 129438225 -72890122 + L1P5 LINE L1 5177 5439 -712 2178 78 3 10 chr4 129438225 129438519 -72889828 + AluY SINE Alu 20 311 0 273 239 78 35 chr4 129440251 129440393 -72887954 - Charlie8 DNA MER1_type -2227 190 43 284 209 60 45 chr4 129440656 129440790 -72887557 + L1MC5 LINE L1 7639 7774 -187 1866 186 61 16 chr4 129441230 129441633 -72886714 - MLT1C LTR MaLR 0 467 41 2155 75 142 9 chr4 129441633 129441964 -72886383 - THE1C LTR MaLR 0 375 1 1866 186 61 16 chr4 129441964 129442002 -72886345 - MLT1C LTR MaLR -426 41 6 370 387 38 31 chr4 129442255 129442547 -72885800 - L2 LINE L2 -466 2848 2555 2059 176 3 3 chr4 129442880 129443249 -72885098 - MER66B LTR ERV1 -117 369 1 267 270 43 17 chr4 129443885 129444000 -72884347 + MER113 DNA MER1_type? 272 389 -132 295 240 153 40 chr4 129444649 129444799 -72883548 + MIR SINE MIR 12 178 -84 303 346 85 0 chr4 129445622 129445810 -72882537 + HERVL LTR ERVL 1803 2006 -3758 328 371 0 28 chr4 129446024 129446202 -72882145 - L2 LINE L2 -592 2722 2550 337 308 0 0 chr4 129446996 129447074 -72881273 - L2 LINE L2 0 3313 3236 428 273 136 60 chr4 129447087 129447439 -72880908 + MLT1J2 LTR MaLR 43 421 -29 318 352 37 0 chr4 129447456 129447564 -72880783 - L2 LINE L2 -377 2937 2826 1642 194 26 0 chr4 129447565 129447875 -72880472 - Tigger6 DNA MER2_type -764 319 2 886 256 96 116 chr4 129447903 129448488 -72879859 - L2 LINE L2 -1567 1747 1175 195 42 0 0 chr4 129449215 129449239 -72879108 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 258 32 0 0 chr4 129449291 129449322 -72879025 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 534 329 24 97 chr4 129449362 129449590 -72878757 + L2 LINE L2 2883 3073 -199 2156 139 0 0 chr4 129449590 129449900 -72878447 + AluSx SINE Alu 1 310 -2 534 329 24 97 chr4 129449900 129450051 -72878296 + L2 LINE L2 3073 3234 -38 266 291 40 66 chr4 129450263 129450414 -72877933 + MIR3 SINE MIR 33 179 -29 708 133 0 0 chr4 129451363 129451468 -72876879 + FLAM_C SINE Alu 22 126 -17 2342 108 55 21 chr4 129451610 129451989 -72876358 + MSTC LTR MaLR 1 392 -36 339 109 94 0 chr4 129451989 129452053 -72876294 + MSTC LTR MaLR 354 423 -5 2255 226 78 104 chr4 129452698 129453218 -72875129 + L2 LINE L2 1982 2514 -799 2033 145 3 0 chr4 129453218 129453508 -72874839 + AluSx SINE Alu 5 295 -17 2255 226 78 104 chr4 129453508 129454178 -72874169 + L2 LINE L2 2514 3146 -167 457 260 10 12 chr4 129454203 129454354 -72873993 + HERVL LTR ERVL 4706 4817 -837 210 315 101 0 chr4 129454745 129454834 -72873513 + MIR SINE MIR 149 246 -16 2272 99 3 16 chr4 129455022 129455335 -72873012 + AluSc SINE Alu 1 309 0 331 219 276 0 chr4 129456542 129456647 -72871700 - MIR SINE MIR -108 154 21 244 344 62 39 chr4 129457066 129457194 -72871153 + L3 LINE CR1 194 324 -1253 673 326 51 27 chr4 129457831 129458165 -72870182 + L3 LINE CR1 409 750 -827 359 254 55 0 chr4 129458350 129458460 -72869887 + L1MD3 LINE L1 6820 6935 -1060 1116 254 57 47 chr4 129458512 129459235 -72869112 + L2 LINE L2 2584 3313 0 226 261 134 38 chr4 129459318 129459475 -72868872 - L1ME LINE L1 -464 5698 5527 346 271 147 0 chr4 129459497 129459626 -72868721 + L3 LINE CR1 1089 1236 -341 1990 142 0 16 chr4 129459913 129460224 -72868123 - AluJb SINE Alu -6 306 1 1500 177 51 31 chr4 129460532 129460664 -72867683 + MLT1A1 LTR MaLR 1 129 -236 1770 151 121 39 chr4 129460664 129461028 -72867319 + MSTD LTR MaLR 1 394 -2 1500 177 51 31 chr4 129461028 129461251 -72867096 + MLT1A1 LTR MaLR 129 363 -2 418 272 32 24 chr4 129461903 129462028 -72866319 - MIR SINE MIR -117 145 20 185 373 0 0 chr4 129462395 129462454 -72865893 - MIR SINE MIR -128 134 76 2426 127 29 38 chr4 129462865 129463038 -72865309 + MER65A LTR ERV1 1 174 -271 342 0 0 0 chr4 129463038 129463076 -72865271 + (CA)n Simple_repeat Simple_repeat 1 38 0 315 0 0 0 chr4 129463075 129463110 -72865237 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 2426 127 29 38 chr4 129463076 129463385 -72864962 + MER65A LTR ERV1 174 445 0 681 227 155 16 chr4 129463941 129464192 -72864155 + L2 LINE L2 3008 3293 -20 286 256 66 81 chr4 129464223 129464377 -72863970 + MIR3 SINE MIR 33 184 -24 1341 224 55 43 chr4 129465053 129465491 -72862856 + LTR47B LTR ERVL 1 443 0 198 0 51 51 chr4 129465730 129465769 -72862578 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 327 300 145 55 chr4 129466062 129466587 -72861760 - L1M2 LINE L1 -5612 1237 752 1875 88 15 11 chr4 129467326 129467588 -72860759 - AluSx SINE Alu -7 305 43 214 333 39 13 chr4 129468679 129468757 -72859590 - L3b LINE CR1 -48 1535 1456 353 310 18 18 chr4 129469685 129469856 -72858491 + L2 LINE L2 1886 2056 -1258 377 231 30 82 chr4 129469864 129470030 -72858317 + MIR SINE MIR 1 165 -43 1830 164 84 53 chr4 129471585 129471879 -72856468 - MER31B LTR ERV1 -1 465 151 1324 199 88 26 chr4 129471879 129472231 -72856116 - MLT1A2 LTR MaLR 0 374 1 1830 164 84 53 chr4 129472231 129472387 -72855960 - MER31B LTR ERV1 -315 151 1 2341 71 24 3 chr4 129472849 129473144 -72855203 - AluY SINE Alu -10 301 1 1570 101 41 0 chr4 129474030 129474248 -72854099 + MER30 DNA MER1_type 4 230 0 210 328 90 55 chr4 129474584 129474840 -72853507 + L2 LINE L2 2826 3090 -182 231 36 0 0 chr4 129476353 129476381 -72851966 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 213 206 40 143 chr4 129477297 129477423 -72850924 - L2 LINE L2 -23 3249 3137 2650 149 48 34 chr4 129477593 129477630 -72850717 + L1MA9 LINE L1 5743 5778 -534 249 57 0 0 chr4 129477630 129477665 -72850682 + (CA)n Simple_repeat Simple_repeat 2 36 0 2650 149 48 34 chr4 129477665 129478189 -72850158 + L1MA9 LINE L1 5778 6312 0 1261 170 5 0 chr4 129481016 129481216 -72847131 - AluSq SINE Alu -112 201 1 28 48 0 0 chr4 129481422 129481464 -72846883 + AT_rich Low_complexity Low_complexity 1 42 0 288 146 21 0 chr4 129481895 129481943 -72846404 - L2 LINE L2 -8 3305 3257 411 256 188 47 chr4 129482934 129483264 -72845083 - MLT1J LTR MaLR -1 510 217 29 28 0 0 chr4 129484022 129484058 -72844289 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 129487141 129487163 -72841184 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr4 129488039 129488075 -72840272 + AT_rich Low_complexity Low_complexity 1 36 0 403 318 119 33 chr4 129488151 129488572 -72839775 + L1M4 LINE L1 4616 5072 -1074 414 319 137 23 chr4 129488580 129488975 -72839372 - LTR16A LTR ERVL -10 440 1 759 144 0 0 chr4 129489080 129489191 -72839156 + FLAM_C SINE Alu 1 111 -32 7323 49 0 0 chr4 129489698 129490630 -72837717 - L1PA6 LINE L1 0 6154 5223 432 223 46 15 chr4 129491873 129492003 -72836344 + MER97a DNA MER1_type? 45 178 -716 323 273 29 105 chr4 129492213 129492385 -72835962 + MIR3 SINE MIR 35 193 -15 249 298 106 11 chr4 129492414 129492508 -72835839 + MIR SINE MIR 25 127 -81 22 35 0 0 chr4 129492929 129492958 -72835389 + AT_rich Low_complexity Low_complexity 1 29 0 748 230 63 40 chr4 129493165 129493417 -72834930 + MIR SINE MIR 2 259 -3 199 333 0 0 chr4 129493649 129493715 -72834632 + L2 LINE L2 2990 3055 -217 189 342 60 68 chr4 129493843 129493960 -72834387 + L2 LINE L2 3122 3237 -35 315 337 96 26 chr4 129494122 129494425 -72833922 - L2 LINE L2 -1023 2291 1968 208 291 51 0 chr4 129494432 129494511 -72833836 - L2 LINE L2 -2 3270 3188 2110 130 8 72 chr4 129495787 129496178 -72832169 + MER47A DNA MER2_type 1 366 0 421 298 19 42 chr4 129496615 129496830 -72831517 + MLT1K LTR MaLR 379 588 0 410 312 101 0 chr4 129497441 129497579 -72830768 - MIR SINE MIR -110 152 1 715 208 6 19 chr4 129501153 129501312 -72827035 - MLT1D LTR MaLR -1 504 348 669 226 68 0 chr4 129501296 129501473 -72826874 - MLT1D LTR MaLR -315 190 2 * 3089 158 27 32 chr4 129501517 129502143 -72826204 + L1MC2 LINE L1 5722 6344 0 659 202 25 0 chr4 129502647 129502766 -72825581 + FLAM_A SINE Alu 1 122 -11 2188 93 3 35 chr4 129503244 129503556 -72824791 - AluSg1 SINE Alu -7 302 1 296 229 0 29 chr4 129504654 129504724 -72823623 - L2 LINE L2 -22 3291 3224 2563 55 0 10 chr4 129504893 129505203 -72823144 + AluY SINE Alu 1 307 -4 225 204 0 23 chr4 129505714 129505758 -72822589 + Alu SINE Alu 84 126 -176 728 167 25 0 chr4 129505780 129505900 -72822447 + FLAM_C SINE Alu 1 123 -20 1106 268 66 8 chr4 129505931 129506331 -72822016 + L1ME3A LINE L1 5707 6127 -43 33179 98 11 13 chr4 129506331 129511467 -72816880 + L1P LINE L1 10 5136 -1010 494 302 119 20 chr4 129511567 129511769 -72816578 - MIR SINE MIR -40 222 1 250 377 138 8 chr4 129511791 129511921 -72816426 - L2 LINE L2 -1 3271 3125 2271 104 3 7 chr4 129512503 129512811 -72815536 - AluSx SINE Alu -5 307 1 682 208 0 0 chr4 129513313 129513433 -72814914 - FLAM_A SINE Alu -13 120 1 321 309 42 42 chr4 129513915 129514080 -72814267 - L3 LINE CR1 -233 1344 1180 2339 101 0 7 chr4 129514583 129514891 -72813456 - AluSx SINE Alu -6 306 1 3038 190 32 3 chr4 129515161 129515814 -72812533 - L1MC3 LINE L1 -1 7784 7113 485 204 33 66 chr4 129515812 129515993 -72812354 - L1M4 LINE L1 -1141 5005 4831 * 2019 97 52 0 chr4 129516009 129516305 -72812042 - AluSx SINE Alu 0 310 1 306 328 45 22 chr4 129516506 129516640 -72811707 - MIR3 SINE MIR -7 201 65 1604 164 13 95 chr4 129517161 129517540 -72810807 - MLT1A1 LTR MaLR -17 348 1 1914 158 0 3 chr4 129517889 129518180 -72810167 + AluJb SINE Alu 1 290 -22 388 261 9 27 chr4 129518187 129518298 -72810049 - MIR SINE MIR -14 248 140 1693 156 25 7 chr4 129519117 129519399 -72808948 + AluJb SINE Alu 1 287 -25 696 271 81 36 chr4 129519498 129519745 -72808602 + MIR SINE MIR 5 262 0 2329 145 20 10 chr4 129520107 129520513 -72807834 - L1MC1 LINE L1 0 6333 5924 32 26 0 0 chr4 129521436 129521475 -72806872 + AT_rich Low_complexity Low_complexity 1 39 0 1729 151 145 20 chr4 129521633 129521985 -72806362 + MSTD LTR MaLR 1 396 0 301 256 13 51 chr4 129522535 129522613 -72805734 - L2 LINE L2 -4 3309 3235 409 206 83 115 chr4 129522695 129522913 -72805434 + HAL1 LINE L1 1 211 -2296 207 87 0 65 chr4 129523090 129523136 -72805211 + (CAAAAA)n Simple_repeat Simple_repeat 3 45 0 412 214 11 0 chr4 129523174 129523263 -72805084 + HAL1 LINE L1 796 885 -1622 1679 242 73 101 chr4 129523335 129524192 -72804155 + HAL1 LINE L1 1091 1893 -614 1692 193 16 7 chr4 129524192 129524497 -72803850 - AluJb SINE Alu -4 308 1 1679 242 73 101 chr4 129524497 129525087 -72803260 + HAL1 LINE L1 1893 2498 -9 532 189 49 0 chr4 129525775 129525897 -72802450 + MER65B LTR ERV1 1 128 -403 2160 116 17 9 chr4 129525938 129526284 -72802063 - L1PA13 LINE L1 -3 6160 5812 369 229 42 0 chr4 129527506 129527650 -72800697 + (TA)n Simple_repeat Simple_repeat 2 151 0 37 90 0 0 chr4 129527652 129527752 -72800595 + AT_rich Low_complexity Low_complexity 1 100 0 234 220 0 0 chr4 129527762 129527812 -72800535 - L1ME2 LINE L1 -60 6104 6055 227 154 0 0 chr4 129527812 129527851 -72800496 - MER3 DNA MER1_type -160 49 11 723 223 92 71 chr4 129527854 129528137 -72800210 - L1ME2 LINE L1 -150 6016 5728 465 191 15 92 chr4 129528605 129528736 -72799611 - MLT1D LTR MaLR 0 567 447 1535 54 10 10 chr4 129528840 129529044 -72799303 + L1PA6 LINE L1 5949 6152 -2 368 305 113 31 chr4 129529276 129529532 -72798815 + L1MC4a LINE L1 4767 5043 -1103 1294 289 82 25 chr4 129529743 129530553 -72797794 + L1MC4a LINE L1 5260 6115 -1693 225 293 14 27 chr4 129530864 129530882 -72797465 - L1MA10 LINE L1 0 6334 6317 1958 237 36 48 chr4 129530882 129531176 -72797171 - L1ME1 LINE L1 -7 6159 5863 2223 127 10 0 chr4 129531176 129531483 -72796864 - AluSx SINE Alu -2 310 1 1958 237 36 48 chr4 129531483 129531830 -72796517 - L1ME1 LINE L1 -303 5863 5526 2047 184 48 18 chr4 129531891 129532330 -72796017 - MLT1D LTR MaLR -32 473 22 233 295 48 0 chr4 129532357 129532462 -72795885 - L1MCc LINE L1 -6296 127 18 615 62 0 0 chr4 129532586 129532666 -72795681 + (TG)n Simple_repeat Simple_repeat 2 81 0 2004 102 7 0 chr4 129532795 129533079 -72795268 - L1PA10 LINE L1 -1 6167 5882 431 281 11 68 chr4 129533832 129534113 -72794234 - HAL1 LINE L1 -2 2505 2241 289 250 87 10 chr4 129534567 129534671 -72793676 - HAL1 LINE L1 -572 1935 1824 1520 178 24 0 chr4 129534701 129534988 -72793359 - MSTB1 LTR MaLR 0 432 139 469 195 24 24 chr4 129535139 129535262 -72793085 - MER106B DNA MER1_type 0 1059 937 1747 186 64 6 chr4 129536211 129536556 -72791791 + MLT1A1 LTR MaLR 1 365 0 648 225 31 63 chr4 129536587 129536809 -72791538 + MER106A DNA MER1_type 5 219 -17 2187 120 0 0 chr4 129536815 129537114 -72791233 - AluSg SINE Alu -11 299 1 25 31 0 0 chr4 129537697 129537729 -72790618 + AT_rich Low_complexity Low_complexity 1 32 0 1962 144 35 0 chr4 129538302 129538587 -72789760 - AluJb SINE Alu -17 295 1 701 219 143 9 chr4 129538916 129539126 -72789221 + MIR SINE MIR 7 244 -18 277 325 13 0 chr4 129539133 129539210 -72789137 + L2 LINE L2 3236 3313 0 21 36 0 0 chr4 129540531 129540559 -72787788 + AT_rich Low_complexity Low_complexity 1 28 0 391 358 105 13 chr4 129540757 129540986 -72787361 + MIR SINE MIR 3 252 -10 579 255 90 63 chr4 129540987 129541397 -72786950 - MLT1J2 LTR MaLR 0 450 1 1147 297 57 0 chr4 129541618 129542025 -72786322 + L1ME4a LINE L1 5486 5915 -206 597 218 65 32 chr4 129542057 129542273 -72786074 + L1ME3A LINE L1 5729 5951 -219 561 300 121 4 chr4 129542646 129542886 -72785461 - MLT1L LTR MaLR -27 588 321 442 242 145 48 chr4 129542940 129543126 -72785221 - MLT1L LTR MaLR -402 213 10 1089 131 0 0 chr4 129543788 129543941 -72784406 - AluSx SINE Alu -159 153 1 245 239 0 42 chr4 129544027 129544098 -72784249 + GA-rich Low_complexity Low_complexity 1 68 0 23 0 0 0 chr4 129544899 129544922 -72783425 + AT_rich Low_complexity Low_complexity 1 23 0 2377 218 77 2 chr4 129545609 129546132 -72782215 + MER68 LTR ERV1 1 562 0 753 110 0 0 chr4 129546172 129546281 -72782066 + MER57A LTR ERV1 1 109 -294 1497 284 18 38 chr4 129546281 129546514 -72781833 + MLT2F LTR ERVL 220 441 -222 1648 243 47 11 chr4 129546514 129546963 -72781384 + LTR40c LTR ERVL 1 465 0 1497 284 18 38 chr4 129546963 129547176 -72781171 + MLT2F LTR ERVL 441 657 -6 2129 100 19 16 chr4 129547438 129547749 -72780598 + AluSx SINE Alu 1 312 0 297 179 0 0 chr4 129648163 129648230 -72680117 + L1M LINE L1 5318 5384 -920 2267 106 0 7 chr4 129648411 129648713 -72679634 - AluSx SINE Alu -12 300 1 188 326 0 0 chr4 129648931 129648980 -72679367 + MIR SINE MIR 41 89 -119 3919 194 20 45 chr4 129649689 129651013 -72677334 + L1M2 LINE L1 4452 5765 -532 1701 128 4 0 chr4 129651114 129651348 -72676999 - AluSx SINE Alu -75 237 3 1827 148 23 23 chr4 129651397 129651702 -72676645 - AluJo SINE Alu -7 305 1 22 35 0 0 chr4 129651711 129651740 -72676607 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 129651905 129651926 -72676421 + AT_rich Low_complexity Low_complexity 1 21 0 2238 135 3 0 chr4 129652080 129652391 -72675956 - AluSx SINE Alu 0 312 1 2740 16 0 0 chr4 129652943 129653247 -72675100 + AluYa5 SINE Alu 1 304 -7 2178 109 3 16 chr4 129653612 129653924 -72674423 - AluY SINE Alu -3 308 1 329 136 15 0 chr4 129654754 129654820 -72673527 + GA-rich Low_complexity Low_complexity 2 68 0 266 188 25 25 chr4 129655040 129655120 -72673227 + LTR67 LTR ERVL 432 511 -46 31 26 0 0 chr4 129655512 129655550 -72672797 + AT_rich Low_complexity Low_complexity 1 38 0 1971 147 0 23 chr4 129656297 129656597 -72671750 - AluSx SINE Alu -14 298 6 420 284 124 25 chr4 129658351 129658552 -72669795 + MIR SINE MIR 36 256 -6 201 403 81 11 chr4 129658573 129658759 -72669588 - L2 LINE L2 -682 2632 2434 22 0 0 0 chr4 129659056 129659078 -72669269 + AT_rich Low_complexity Low_complexity 1 22 0 602 146 0 0 chr4 129659082 129659171 -72669176 + AluSg/x SINE Alu 197 285 -27 425 288 22 7 chr4 129659838 129659977 -72668370 - MER5A DNA MER1_type -48 141 1 1358 186 58 53 chr4 129660192 129660552 -72667795 - MLT1A2 LTR MaLR -12 362 1 270 0 0 0 chr4 129661639 129661669 -72666678 + (CA)n Simple_repeat Simple_repeat 2 31 0 43 20 0 0 chr4 129661867 129661917 -72666430 + AT_rich Low_complexity Low_complexity 1 50 0 21 57 0 0 chr4 129662091 129662126 -72666221 + AT_rich Low_complexity Low_complexity 1 35 0 191 250 148 83 chr4 129662140 129662248 -72666099 + MIR SINE MIR 32 146 -62 781 157 71 0 chr4 129663318 129663458 -72664889 + FRAM SINE Alu 4 153 -23 23 33 0 0 chr4 129663459 129663489 -72664858 + AT_rich Low_complexity Low_complexity 1 30 0 397 162 14 0 chr4 129665224 129665298 -72663049 - U2 snRNA snRNA -2 186 112 26 30 0 0 chr4 129665572 129665605 -72662742 + AT_rich Low_complexity Low_complexity 1 33 0 226 236 14 0 chr4 129666081 129666153 -72662194 - L1ME4a LINE L1 -3 6118 6046 1770 123 138 0 chr4 129666332 129666657 -72661690 - MER65A LTR ERV1 -36 409 40 1776 107 51 92 chr4 129666892 129667284 -72661063 - L1MA7 LINE L1 -5 6286 5911 576 223 61 40 chr4 129667315 129667463 -72660884 + MER91A DNA MER1_type 18 168 -28 464 188 0 12 chr4 129667817 129667902 -72660445 + AluJo SINE Alu 87 170 -142 2005 109 3 18 chr4 129667910 129668195 -72660152 + AluJo SINE Alu 21 301 -11 406 311 60 12 chr4 129668240 129668407 -72659940 + MIR SINE MIR 37 211 -51 226 310 37 70 chr4 129668554 129668669 -72659678 - MIR SINE MIR -66 142 37 432 347 7 0 chr4 129668927 129669071 -72659276 + MIR SINE MIR 2 146 -116 207 0 0 0 chr4 129669316 129669339 -72659008 + (T)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr4 129670286 129670308 -72658039 + AT_rich Low_complexity Low_complexity 1 22 0 604 218 275 0 chr4 129671065 129671258 -72657089 - MIR SINE MIR -10 252 7 1004 169 21 21 chr4 129673183 129673372 -72654975 - MER5A DNA MER1_type 0 189 1 313 67 0 0 chr4 129673418 129673463 -72654884 - MER65A LTR ERV1 0 445 401 1821 104 4 4 chr4 129673463 129673704 -72654643 + AluSx SINE Alu 1 241 -71 1406 183 25 43 chr4 129674152 129674217 -72654130 - MLT1A1 LTR MaLR -11 354 289 2328 98 0 3 chr4 129674217 129674513 -72653834 + AluSp SINE Alu 1 295 -18 1406 183 25 43 chr4 129674513 129674770 -72653577 - MLT1A1 LTR MaLR -76 289 38 460 127 13 13 chr4 129679774 129679853 -72648494 + MADE1 DNA Mariner 1 79 -1 392 271 39 39 chr4 129681196 129681325 -72647022 + MIR SINE MIR 16 144 -64 294 307 45 0 chr4 129681789 129681877 -72646470 - MIR3 SINE MIR -5 203 112 296 308 263 0 chr4 129682192 129682348 -72645999 + MIR SINE MIR 56 252 -10 3803 111 29 5 chr4 129682350 129682944 -72645403 - L1PA16 LINE L1 -6 6160 5553 359 278 126 0 chr4 129685020 129685171 -72643176 + MIR SINE MIR 74 243 -19 341 291 0 0 chr4 129685424 129685510 -72642837 + L2 LINE L2 3187 3272 0 573 272 66 24 chr4 129686035 129686322 -72642025 - L1MC4a LINE L1 -1828 5980 5682 334 309 88 15 chr4 129689461 129689597 -72638750 + MIR SINE MIR 47 192 -70 499 276 73 26 chr4 129689643 129689835 -72638512 - MIR SINE MIR -41 221 21 25 51 0 0 chr4 129690446 129690485 -72637862 + AT_rich Low_complexity Low_complexity 1 39 0 30 0 0 0 chr4 129691795 129691825 -72636522 + AT_rich Low_complexity Low_complexity 1 30 0 247 204 74 0 chr4 129691829 129691883 -72636464 - MIR3 SINE MIR -13 195 138 5741 102 38 27 chr4 129692437 129692657 -72635690 - L1MA5A LINE L1 -1 6296 6080 2080 130 9 32 chr4 129692657 129693002 -72635345 - MER1B DNA MER1_type 0 337 1 5741 102 38 27 chr4 129693002 129693720 -72634627 - L1MA5A LINE L1 -217 6080 5347 240 233 33 33 chr4 129694136 129694316 -72634031 + (TA)n Simple_repeat Simple_repeat 1 180 0 23 0 0 0 chr4 129694465 129694488 -72633859 + AT_rich Low_complexity Low_complexity 1 23 0 918 195 79 5 chr4 129694619 129694809 -72633538 + MER3 DNA MER1_type 6 209 0 314 98 20 20 chr4 129694769 129694820 -72633527 - MER3 DNA MER1_type -122 87 37 * 252 245 31 20 chr4 129695272 129695370 -72632977 - L1ME LINE L1 -306 5815 5717 1744 135 52 14 chr4 129696032 129696320 -72632027 - AluSx SINE Alu -13 299 1 30 0 0 0 chr4 129696394 129696424 -72631923 + AT_rich Low_complexity Low_complexity 1 30 0 968 195 148 19 chr4 129698524 129698734 -72629613 + MER8 DNA MER2_type 2 238 -1 2360 100 0 3 chr4 129699991 129700302 -72628045 - AluSx SINE Alu -2 310 1 22 56 0 0 chr4 129701660 129701696 -72626651 + AT_rich Low_complexity Low_complexity 1 36 0 310 306 120 88 chr4 129703309 129703875 -72624472 + L1M2 LINE L1 376 959 -5890 326 255 124 41 chr4 129704339 129704484 -72623863 + MIR SINE MIR 88 244 -18 28 0 0 0 chr4 129704830 129704858 -72623489 + AT_rich Low_complexity Low_complexity 1 28 0 258 305 200 5 chr4 129705371 129705581 -72622766 + MIR SINE MIR 2 252 -10 219 200 180 0 chr4 129706503 129706553 -72621794 + MIR SINE MIR 92 150 -112 819 194 45 131 chr4 129706562 129706763 -72621584 - MER46C DNA MER2_type -8 330 167 2076 99 3 7 chr4 129706763 129707070 -72621277 + AluSg SINE Alu 1 306 0 819 194 45 131 chr4 129707070 129707202 -72621145 - MER46C DNA MER2_type -171 167 25 417 319 102 0 chr4 129707408 129707574 -72620773 + MIR SINE MIR 7 189 -73 25 0 0 0 chr4 129708791 129708816 -72619531 + AT_rich Low_complexity Low_complexity 1 25 0 2158 108 0 10 chr4 129709294 129709589 -72618758 - AluSc SINE Alu -8 301 10 519 244 142 35 chr4 129709727 129710084 -72618263 + MLT1K LTR MaLR 174 588 0 1993 120 7 3 chr4 129710190 129710481 -72617866 + AluSx SINE Alu 9 300 -12 729 281 61 9 chr4 129710587 129710815 -72617532 - MIR SINE MIR -11 251 12 244 297 0 27 chr4 129710835 129710909 -72617438 - L2 LINE L2 0 3313 3242 2211 114 3 0 chr4 129710988 129711296 -72617051 + AluSc SINE Alu 1 309 0 753 160 32 0 chr4 129711413 129711538 -72616809 + FLAM_A SINE Alu 1 129 -4 387 0 0 0 chr4 129712073 129712116 -72616231 + (CA)n Simple_repeat Simple_repeat 2 44 0 916 138 14 0 chr4 129712858 129712996 -72615351 - FLAM_C SINE Alu -3 140 1 239 304 109 11 chr4 129713079 129713171 -72615176 + MIR SINE MIR 2 102 -160 386 281 122 36 chr4 129713341 129713480 -72614867 - MIR3 SINE MIR -55 153 3 28 0 0 0 chr4 129713577 129713605 -72614742 + AT_rich Low_complexity Low_complexity 1 28 0 493 217 145 0 chr4 129713664 129713802 -72614545 + MIR SINE MIR 95 252 -10 25 65 0 0 chr4 129714152 129714198 -72614149 + AT_rich Low_complexity Low_complexity 1 46 0 521 301 99 16 chr4 129715650 129716105 -72612242 - L1MC4a LINE L1 -551 5570 5348 2043 129 0 23 chr4 129716113 129716416 -72611931 - AluSx SINE Alu -12 300 5 2185 117 3 0 chr4 129716659 129716958 -72611389 + AluSx SINE Alu 1 300 -12 276 188 0 0 chr4 129717418 129717466 -72610881 + L1MC5 LINE L1 7382 7429 -532 1408 111 0 68 chr4 129717521 129717756 -72610591 + AluSg/x SINE Alu 77 295 -15 628 185 185 49 chr4 129717795 129718060 -72610287 + L1MC5 LINE L1 7611 7911 -50 818 147 0 16 chr4 129718122 129718251 -72610096 + FLAM_C SINE Alu 1 127 -16 392 291 204 24 chr4 129718605 129718811 -72609536 - MIR SINE MIR 0 262 20 2029 137 60 23 chr4 129718888 129719239 -72609108 + THE1B LTR MaLR 1 364 0 361 219 0 0 chr4 129719336 129719400 -72608947 + L2 LINE L2 3200 3263 -9 1249 163 0 10 chr4 129719675 129719878 -72608469 - AluSg/x SINE Alu -12 300 100 1657 169 0 45 chr4 129720002 129720310 -72608037 + AluJo SINE Alu 1 294 -18 325 145 14 29 chr4 129720321 129720390 -72607957 + L1MC5 LINE L1 7840 7907 -54 21 0 0 0 chr4 129720655 129720676 -72607671 + AT_rich Low_complexity Low_complexity 1 21 0 2267 109 3 3 chr4 129720699 129721010 -72607337 + AluSx SINE Alu 1 311 -1 23 0 0 71 chr4 129721060 129721081 -72607266 + AT_rich Low_complexity Low_complexity 1 19 -20 2095 130 0 3 chr4 129721081 129721388 -72606959 + AluJo SINE Alu 1 306 -6 23 0 0 71 chr4 129721388 129721408 -72606939 + AT_rich Low_complexity Low_complexity 19 39 0 32 0 0 0 chr4 129721426 129721458 -72606889 + AT_rich Low_complexity Low_complexity 1 32 0 188 150 50 25 chr4 129721654 129721694 -72606653 + L2 LINE L2 3268 3308 -5 481 337 61 68 chr4 129721719 129722219 -72606128 - L2 LINE L2 -290 2982 2483 1173 179 35 9 chr4 129722219 129722448 -72605899 + MER46A DNA MER2_type 2 236 0 481 337 61 68 chr4 129722448 129722573 -72605774 - L2 LINE L2 -789 2483 2359 201 171 24 24 chr4 129723183 129723224 -72605123 + MER91 DNA MER1_type 77 117 -23 2281 110 3 0 chr4 129723817 129724126 -72604221 + AluSx SINE Alu 3 312 0 302 168 128 112 chr4 129725145 129725270 -72603077 - L2 LINE L2 0 3313 3187 2952 175 16 24 chr4 129726920 129727473 -72600874 + MER44D DNA MER2_type 1 604 -1 22 0 0 0 chr4 129727507 129727529 -72600818 + AT_rich Low_complexity Low_complexity 1 22 0 194 175 100 0 chr4 129727750 129727790 -72600557 - L2 LINE L2 -7 3265 3222 467 167 0 0 chr4 129727932 129728010 -72600337 - AluJ/FRAM SINE Alu -14 298 221 22 35 0 0 chr4 129728110 129728139 -72600208 + AT_rich Low_complexity Low_complexity 1 29 0 1846 165 3 3 chr4 129728151 129728460 -72599887 - AluJo SINE Alu -3 309 1 333 206 268 48 chr4 129728492 129728701 -72599646 + MER112 DNA MER1_type 2 256 -4 204 259 19 19 chr4 129728930 129728984 -72599363 - MER5A DNA MER1_type -94 95 42 527 228 173 72 chr4 129729002 129729309 -72599038 - Charlie2a DNA MER1_type -870 1992 1655 353 62 42 0 chr4 129729325 129729373 -72598974 + MER66A LTR ERV1 287 336 -142 473 196 0 9 chr4 129729386 129729493 -72598854 + GA-rich Low_complexity Low_complexity 3 108 0 1389 299 96 43 chr4 129731214 129732209 -72596138 + L2 LINE L2 2149 3193 -120 23 54 0 0 chr4 129732609 129732646 -72595701 + AT_rich Low_complexity Low_complexity 1 37 0 182 355 136 18 chr4 129732949 129733025 -72595322 - MIR3 SINE MIR -3 205 139 1751 133 23 40 chr4 129733025 129733326 -72595021 + AluJb SINE Alu 1 296 -16 182 355 136 18 chr4 129733326 129733418 -72594929 - MIR3 SINE MIR -69 139 17 276 186 0 0 chr4 129733746 129733805 -72594542 + (TA)n Simple_repeat Simple_repeat 2 60 0 257 322 0 0 chr4 129733808 129733898 -72594449 - L1MC4 LINE L1 -1339 6703 6614 * 296 256 47 0 chr4 129733824 129733910 -72594437 + L1MC4 LINE L1 6614 6703 -1339 667 164 26 0 chr4 129734389 129734505 -72593842 + AluSg SINE Alu 5 123 -187 202 300 83 0 chr4 129734613 129734673 -72593674 - L2 LINE L2 0 3313 3249 21 57 0 0 chr4 129734914 129734949 -72593398 + AT_rich Low_complexity Low_complexity 1 35 0 183 241 69 17 chr4 129735550 129735608 -72592739 - L2 LINE L2 0 3313 3253 * 620 288 104 0 chr4 129735580 129735792 -72592555 - MIR SINE MIR -27 235 2 28 0 0 0 chr4 129736116 129736144 -72592203 + AT_rich Low_complexity Low_complexity 1 28 0 195 273 109 36 chr4 129736608 129736663 -72591684 + L3 LINE CR1 1515 1573 -4 357 268 312 7 chr4 129737558 129737696 -72590651 + MER5A DNA MER1_type 10 189 0 1422 252 108 28 chr4 129738212 129738645 -72589702 + MLT1E LTR MaLR 122 589 -4 313 172 16 0 chr4 129739177 129739241 -72589106 - L1PA16 LINE L1 -5 6161 6097 349 208 52 10 chr4 129739380 129739476 -72588871 - L1MC5 LINE L1 -36 7925 7826 1723 139 56 23 chr4 129739556 129739859 -72588488 + MER1B DNA MER1_type 27 339 0 1631 342 61 11 chr4 129739860 129740336 -72588011 + Charlie1 DNA MER1_type 2261 2760 -1 6156 133 25 24 chr4 129740404 129740867 -72587480 - L1MA5A LINE L1 0 6297 5836 2145 129 0 0 chr4 129740867 129741176 -72587171 - AluSq SINE Alu -4 309 1 6156 133 25 24 chr4 129741176 129741952 -72586395 - L1MA5A LINE L1 -461 5836 5061 216 0 0 0 chr4 129741977 129742001 -72586346 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1270 126 0 11 chr4 129742020 129742202 -72586145 - AluSq SINE Alu -133 180 1 5321 125 17 6 chr4 129742202 129743093 -72585254 - L1MA5A LINE L1 -1131 5015 4115 1855 176 7 13 chr4 129744047 129744353 -72583994 + AluJo SINE Alu 9 312 0 338 321 146 28 chr4 129744692 129744904 -72583443 + MIR SINE MIR 2 238 -24 2080 108 7 0 chr4 129744916 129745212 -72583135 - AluSx SINE Alu -14 298 1 373 175 10 41 chr4 129746196 129746293 -72582054 - Charlie1a DNA MER1_type 0 1455 1362 4809 133 89 9 chr4 129746305 129746944 -72581403 - L1PB2 LINE L1 0 6151 5564 1985 82 0 11 chr4 129746944 129747213 -72581134 - AluSg SINE Alu 0 310 45 4809 133 89 9 chr4 129747213 129747832 -72580515 - L1PB2 LINE L1 -587 5564 4760 207 0 0 0 chr4 129747832 129747855 -72580492 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4809 133 89 9 chr4 129747855 129748076 -72580271 - L1PB2 LINE L1 -1391 4760 4558 566 182 80 8 chr4 129748170 129748396 -72579951 - Charlie1a DNA MER1_type -197 1258 931 * 2665 202 39 59 chr4 129748388 129749149 -72579198 - Charlie1a DNA MER1_type -676 779 34 882 157 0 0 chr4 129749326 129749460 -72578887 - FLAM_C SINE Alu -2 141 8 2085 124 76 24 chr4 129749807 129750177 -72578170 - MLT1B LTR MaLR -1 389 1 569 190 69 0 chr4 129750233 129750349 -72577998 + FLAM_A SINE Alu 10 133 -9 1755 177 13 10 chr4 129751262 129751572 -72576775 - AluJb SINE Alu -1 311 1 567 139 12 0 chr4 129751574 129751660 -72576687 + FLAM_C SINE Alu 36 122 -21 26 30 0 0 chr4 129751662 129751695 -72576652 + AT_rich Low_complexity Low_complexity 1 33 0 1225 235 94 21 chr4 129752573 129752999 -72575348 - LTR16A1 LTR ERVL 0 457 1 7669 185 29 33 chr4 129753507 129755096 -72573251 - L1PB2 LINE L1 -1877 4269 2687 1719 199 37 0 chr4 129755096 129755393 -72572954 + AluJb SINE Alu 1 308 -4 7669 185 29 33 chr4 129755393 129755710 -72572637 - L1PB2 LINE L1 -3459 2687 2370 592 299 159 0 chr4 129755720 129756104 -72572243 - L1MC/D LINE L1 -1992 5816 5372 225 235 106 12 chr4 129756581 129756666 -72571681 - L1MC/D LINE L1 -1306 4840 4748 231 114 0 0 chr4 129756721 129756756 -72571591 + (CA)n Simple_repeat Simple_repeat 2 36 0 2199 127 0 9 chr4 129756796 129757111 -72571236 - AluSx SINE Alu 0 312 1 22 35 0 0 chr4 129757282 129757311 -72571036 + AT_rich Low_complexity Low_complexity 1 29 0 446 247 133 42 chr4 129757349 129757662 -72570685 - MLT1J LTR MaLR -52 459 70 866 231 76 94 chr4 129757901 129758465 -72569882 - MER34B LTR ERV1 -4 561 8 839 282 84 47 chr4 129758492 129758938 -72569409 - HAL1b LINE L1 -603 745 264 2140 123 3 3 chr4 129758938 129759239 -72569108 - AluY SINE Alu -10 301 1 839 282 84 47 chr4 129759239 129759459 -72568888 - HAL1b LINE L1 -1084 264 54 4308 133 13 7 chr4 129759478 129760185 -72568162 - L1MA6 LINE L1 0 6300 5590 2668 101 9 2 chr4 129760185 129760642 -72567705 - L1M2 LINE L1 -617 5683 5224 1643 166 23 0 chr4 129760644 129760952 -72567395 - L1M2 LINE L1 -993 5153 4839 845 135 145 35 chr4 129760953 129761153 -72567194 - MLT1A1 LTR MaLR -143 222 1 1061 85 0 0 chr4 129761256 129761385 -72566962 + AluSq/x SINE Alu 5 133 -179 249 329 70 0 chr4 129761412 129761555 -72566792 + MARNA DNA Mariner 85 237 -349 784 245 0 0 chr4 129761790 129761949 -72566398 + FRAM SINE Alu 1 159 -17 27 0 0 0 chr4 129761976 129762003 -72566344 + AT_rich Low_complexity Low_complexity 1 27 0 29 28 0 0 chr4 129762107 129762143 -72566204 + AT_rich Low_complexity Low_complexity 1 36 0 2456 109 47 14 chr4 129762740 129763162 -72565185 + LTR23 LTR ERV1 2 437 0 438 362 110 25 chr4 129763268 129763550 -72564797 + L3 LINE CR1 1261 1566 -11 352 193 12 12 chr4 129764533 129764616 -72563731 - MER67B LTR ERV1 0 661 579 522 158 0 0 chr4 129765072 129765154 -72563193 + L2 LINE L2 3232 3313 0 1127 279 37 39 chr4 129765721 129766080 -72562267 - L1ME3A LINE L1 -221 5949 5591 597 223 0 16 chr4 129766080 129766201 -72562146 + FLAM_A SINE Alu 2 120 -13 1127 279 37 39 chr4 129766201 129766884 -72561463 - L1ME3A LINE L1 -579 5591 4917 429 212 58 29 chr4 129767001 129767138 -72561209 + L1ME4a LINE L1 5946 6086 -35 233 309 0 0 chr4 129768700 129768755 -72559592 - MIR SINE MIR -57 151 97 581 241 35 9 chr4 129770503 129770619 -72557728 + L2 LINE L2 3138 3256 -16 22 0 0 0 chr4 129770702 129770724 -72557623 + AT_rich Low_complexity Low_complexity 1 22 0 1987 156 0 22 chr4 129771232 129771546 -72556801 + AluSx SINE Alu 1 307 -5 201 422 49 0 chr4 129771949 129772051 -72556296 + L2 LINE L2 3116 3222 -50 24 32 0 0 chr4 129772242 129772273 -72556074 + AT_rich Low_complexity Low_complexity 1 31 0 335 219 98 12 chr4 129773924 129774006 -72554341 + MIR3 SINE MIR 113 201 -7 545 335 102 41 chr4 129774398 129774762 -72553585 + HAL1 LINE L1 160 545 -1962 1020 253 114 20 chr4 129774845 129775283 -72553064 + HAL1 LINE L1 1002 1480 -1027 503 225 254 26 chr4 129775372 129775754 -72552593 + HAL1 LINE L1 2037 2505 -2 1894 175 0 10 chr4 129775858 129776167 -72552180 + AluJo SINE Alu 6 311 -1 209 330 0 0 chr4 129776519 129776610 -72551737 + MIR SINE MIR 64 153 -64 210 312 102 38 chr4 129776914 129777071 -72551276 + L2 LINE L2 2083 2249 -1065 189 139 0 0 chr4 129777792 129777835 -72550512 + (T)n Simple_repeat Simple_repeat 1 43 0 246 328 59 34 chr4 129777898 129778017 -72550330 + L2 LINE L2 3141 3262 -10 213 175 0 0 chr4 129779618 129779658 -72548689 + GA-rich Low_complexity Low_complexity 2 41 0 346 322 107 62 chr4 129780172 129780594 -72547753 + L1M2 LINE L1 822 1262 -5587 216 182 0 0 chr4 129781012 129781056 -72547291 + G-rich Low_complexity Low_complexity 1 44 0 193 353 90 8 chr4 129781558 129781680 -72546667 - MIR3 SINE MIR -28 180 49 350 352 72 64 chr4 129782068 129782777 -72545570 + L2 LINE L2 2503 3268 -4 2463 117 18 23 chr4 129782894 129783286 -72545061 - MLT1B LTR MaLR 0 390 1 22 0 0 0 chr4 129783378 129783400 -72544947 + AT_rich Low_complexity Low_complexity 1 22 0 2096 87 16 45 chr4 129783557 129783866 -72544481 + AluSq SINE Alu 1 300 -13 2265 120 25 35 chr4 129784170 129784538 -72543809 - THE1B LTR MaLR 0 364 1 864 245 78 8 chr4 129784622 129784867 -72543480 + MIR SINE MIR 1 262 0 294 262 68 29 chr4 129784983 129785086 -72543261 + L2 LINE L2 3148 3254 -18 2275 94 17 0 chr4 129785702 129786001 -72542346 - AluY SINE Alu -7 304 1 2004 220 90 13 chr4 129786208 129786686 -72541661 + LTR40a LTR ERVL 5 519 0 1642 158 0 89 chr4 129786702 129787038 -72541309 + AluJb SINE Alu 1 306 -6 258 86 0 0 chr4 129788260 129788295 -72540052 + tRNA-Gly-GGG tRNA tRNA 1 35 -39 218 279 87 19 chr4 129788546 129788650 -72539697 - L3 LINE CR1 -20 1557 1447 204 132 26 0 chr4 129788714 129788752 -72539595 + T-rich Low_complexity Low_complexity 5 43 0 2261 143 29 66 chr4 129788993 129789435 -72538912 - MSTB LTR MaLR 0 426 1 24 0 0 0 chr4 129790185 129790209 -72538138 + AT_rich Low_complexity Low_complexity 1 24 0 849 137 15 0 chr4 129790513 129790644 -72537703 + FLAM_C SINE Alu 1 133 0 1955 133 4 0 chr4 129791081 129791360 -72536987 + AluSx SINE Alu 1 280 -32 231 114 0 0 chr4 129791362 129791397 -72536950 + (TAA)n Simple_repeat Simple_repeat 2 36 0 680 279 114 5 chr4 129791802 129792021 -72536326 + MIR SINE MIR 15 257 -5 226 151 0 57 chr4 129792078 129792131 -72536216 - L1MC/D LINE L1 -1898 5910 5861 2068 119 3 10 chr4 129792428 129792722 -72535625 + AluSx SINE Alu 3 294 -18 3277 259 85 27 chr4 129792809 129792892 -72535455 + L2 LINE L2 38 115 -3199 2169 134 33 25 chr4 129792892 129793251 -72535096 - THE1B LTR MaLR 0 364 3 3277 259 85 27 chr4 129793251 129793365 -72534982 + L2 LINE L2 115 221 -3093 2292 116 0 0 chr4 129793365 129793667 -72534680 - AluSg SINE Alu -8 302 1 3277 259 85 27 chr4 129793667 129794649 -72533698 + L2 LINE L2 221 1275 -2039 2034 115 0 14 chr4 129795308 129795587 -72532760 + AluSq SINE Alu 21 295 -18 340 250 119 31 chr4 129796356 129796516 -72531831 + L1ME4a LINE L1 5694 5867 -254 190 303 172 20 chr4 129796803 129796902 -72531445 - L2 LINE L2 -10 3262 3149 203 143 0 24 chr4 129798068 129798110 -72530237 + (TTCC)n Simple_repeat Simple_repeat 3 43 0 387 105 0 0 chr4 129798155 129798212 -72530135 + (TCCC)n Simple_repeat Simple_repeat 4 60 0 31 26 0 0 chr4 129798402 129798440 -72529907 + AT_rich Low_complexity Low_complexity 1 38 0 2080 86 19 0 chr4 129798569 129798838 -72529509 + AluSg SINE Alu 1 274 -36 234 0 0 0 chr4 129798839 129798865 -72529482 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 389 273 39 23 chr4 129799420 129799548 -72528799 - MIR3 SINE MIR -6 202 73 258 114 91 0 chr4 129800245 129800289 -72528058 - MLT2B2 LTR ERVL 0 520 473 300 200 0 0 chr4 129800449 129800514 -72527833 + (CA)n Simple_repeat Simple_repeat 2 66 0 2080 136 0 7 chr4 129800546 129800847 -72527500 - AluSx SINE Alu -13 299 1 585 211 8 8 chr4 129800847 129800960 -72527387 - MLT2B2 LTR ERVL -53 462 347 667 249 138 0 chr4 129800964 129801189 -72527158 + Charlie2 DNA MER1_type 344 599 -2183 406 269 20 40 chr4 129801212 129801413 -72526934 - L1MEd LINE L1 -4902 1217 1021 499 271 21 85 chr4 129801413 129801649 -72526698 - L2 LINE L2 -5 3308 3088 325 268 93 0 chr4 129801649 129801746 -72526601 - L1MEd LINE L1 -5119 1000 895 660 102 11 0 chr4 129803301 129803389 -72524958 + MER30 DNA MER1_type 141 229 -1 449 287 63 69 chr4 129803409 129803946 -72524401 - L1MEd LINE L1 -5005 1114 581 307 284 126 81 chr4 129804022 129804332 -72524015 - L1MEd LINE L1 -5738 381 58 647 264 165 2 chr4 129804356 129804550 -72523797 + MIR SINE MIR 41 262 0 7058 43 0 77 chr4 129804655 129806266 -72522081 + L1PA3 LINE L1 4619 6155 0 751 179 51 19 chr4 129806269 129806425 -72521922 + MLT2C1 LTR ERVL 189 349 -48 282 282 11 22 chr4 129806480 129806661 -72521686 + (TA)n Simple_repeat Simple_repeat 1 179 0 908 225 6 0 chr4 129806723 129806896 -72521451 - FRAM SINE Alu -3 173 1 242 200 0 0 chr4 129806965 129807010 -72521337 + MLT2C1 LTR ERVL 473 517 -3 281 207 7 157 chr4 129807011 129807151 -72521196 - L2 LINE L2 -400 2914 2796 345 154 27 173 chr4 129807356 129807466 -72520881 + AluJb SINE Alu 205 298 -4 270 352 76 0 chr4 129807530 129807635 -72520712 + L2 LINE L2 3154 3266 -6 222 286 16 0 chr4 129807650 129807713 -72520634 - L3 LINE CR1 -366 1211 1148 307 387 41 10 chr4 129807884 129808078 -72520269 - L3 LINE CR1 -754 823 624 468 335 113 5 chr4 129808133 129808345 -72520002 + L2 LINE L2 2599 2833 -481 236 296 9 17 chr4 129808394 129808509 -72519838 - HAL1 LINE L1 -1018 1489 1376 663 96 0 43 chr4 129808534 129808649 -72519698 - Tigger7 DNA MER2_type -61 2526 2417 238 286 0 0 chr4 129808759 129808808 -72519539 + MER2 DNA MER2_type 296 344 -1 225 97 32 108 chr4 129810093 129810186 -72518161 + T-rich Low_complexity Low_complexity 4 89 0 1786 272 80 38 chr4 129810493 129810825 -72517522 + L1MC4a LINE L1 6241 6558 -1484 198 0 0 0 chr4 129810825 129810847 -72517500 + (GA)n Simple_repeat Simple_repeat 1 22 0 1786 272 80 38 chr4 129810847 129812089 -72516258 + L1MC4a LINE L1 6558 8042 0 467 168 102 22 chr4 129812734 129812871 -72515476 - MER53 DNA DNA 0 189 42 1404 186 25 0 chr4 129812871 129813150 -72515197 + L1MA9 LINE L1 5997 6282 -30 544 108 0 48 chr4 129813159 129813242 -72515105 + AluSq SINE Alu 123 201 -112 278 95 24 0 chr4 129813997 129814039 -72514308 + LTR49 LTR ERV1 553 595 0 222 246 35 7 chr4 129814641 129814783 -72513564 + CT-rich Low_complexity Low_complexity 3 148 0 349 296 15 15 chr4 129815192 129815324 -72513023 - MER94 DNA DNA -2 132 1 355 184 66 0 chr4 129815542 129815618 -72512729 + L1ME2 LINE L1 5769 5849 -317 920 268 4 4 chr4 129815633 129815883 -72512464 + L1ME2 LINE L1 5913 6162 -2 2556 43 0 0 chr4 129815902 129816203 -72512144 - AluY SINE Alu -10 301 1 24 0 0 0 chr4 129816331 129816355 -72511992 + AT_rich Low_complexity Low_complexity 1 24 0 1599 97 4 4 chr4 129816358 129816585 -72511762 - L1PB1 LINE L1 -6 6145 5919 246 121 0 0 chr4 129816686 129816719 -72511628 - Alu SINE Alu -267 33 1 195 42 0 0 chr4 129817139 129817163 -72511184 + (A)n Simple_repeat Simple_repeat 1 24 0 588 264 39 11 chr4 129817950 129818128 -72510219 - MIR SINE MIR -4 258 76 331 322 70 32 chr4 129818529 129818756 -72509591 + MIR SINE MIR 23 259 -3 2369 104 119 13 chr4 129820161 129820547 -72507800 + MSTA LTR MaLR 2 428 0 347 251 135 56 chr4 129820651 129820855 -72507492 + L1MC5 LINE L1 7609 7846 -115 1653 201 25 0 chr4 129820855 129821138 -72507209 - AluJb SINE Alu -22 290 1 347 251 135 56 chr4 129821138 129821236 -72507111 + L1MC5 LINE L1 7846 7935 -26 261 57 0 0 chr4 129824569 129824604 -72503743 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1809 146 19 0 chr4 129824610 129824877 -72503470 - AluSx SINE Alu -40 272 1 23 0 0 0 chr4 129824889 129824912 -72503435 + AT_rich Low_complexity Low_complexity 1 23 0 500 215 148 38 chr4 129825085 129825273 -72503074 - MLT1G1 LTR MaLR 0 595 341 597 312 79 28 chr4 129825322 129825675 -72502672 + MLT1L LTR MaLR 187 557 -58 1227 237 64 25 chr4 129825966 129826272 -72502075 - MER113 DNA MER1_type? -112 409 83 1928 159 0 10 chr4 129826272 129826580 -72501767 + AluSq SINE Alu 1 305 -8 1227 237 64 25 chr4 129826580 129826666 -72501681 - MER113 DNA MER1_type? -438 83 2 196 423 0 18 chr4 129827045 129827156 -72501191 + L2 LINE L2 2949 3057 -215 442 326 69 23 chr4 129827513 129827731 -72500616 - L3b LINE CR1 -79 1504 1277 261 200 15 15 chr4 129828882 129828947 -72499400 + MIR SINE MIR 183 247 -15 324 0 0 0 chr4 129829270 129829306 -72499041 + (CA)n Simple_repeat Simple_repeat 2 37 0 415 243 99 0 chr4 129829944 129830055 -72498292 - LTR16C LTR ERVL -9 482 361 331 130 19 0 chr4 129830205 129830259 -72498088 + MSTC LTR MaLR 372 426 -2 183 460 7 0 chr4 129830307 129830446 -72497901 - L2 LINE L2 -573 2741 2602 1116 284 43 76 chr4 129832433 129832589 -72495758 - MLT1K LTR MaLR 0 588 428 1206 128 0 6 chr4 129832589 129832769 -72495578 + L1PA16 LINE L1 5977 6155 -11 1116 284 43 76 chr4 129832769 129833097 -72495250 - MLT1K LTR MaLR -160 428 120 559 254 8 37 chr4 129833821 129833859 -72494488 - MER45A DNA AcHobo -1451 130 92 2154 132 0 3 chr4 129833859 129834169 -72494178 + AluSx SINE Alu 1 309 -3 559 254 8 37 chr4 129834169 129834264 -72494083 - MER45A DNA AcHobo -1489 92 1 289 269 26 13 chr4 129834359 129834437 -72493910 + MLT1L LTR MaLR 154 232 -383 216 0 0 0 chr4 129834794 129834818 -72493529 + (A)n Simple_repeat Simple_repeat 1 24 0 617 282 56 31 chr4 129835118 129835361 -72492986 + MIR SINE MIR 1 252 -10 25 31 0 0 chr4 129835823 129835855 -72492492 + AT_rich Low_complexity Low_complexity 1 32 0 3071 117 100 0 chr4 129835924 129836403 -72491944 + MER1A DNA MER1_type 1 527 0 326 312 0 0 chr4 129836464 129836589 -72491758 - L1M4 LINE L1 -2211 3935 3811 437 190 211 7 chr4 129836618 129836760 -72491587 + MIR SINE MIR 67 237 -25 351 44 0 0 chr4 129836835 129836880 -72491467 + (TG)n Simple_repeat Simple_repeat 2 46 0 241 217 22 0 chr4 129836883 129836929 -72491418 - L1P LINE L1 -2470 3676 3630 732 235 39 0 chr4 129837203 129837356 -72490991 + MIR SINE MIR 23 181 -81 293 314 83 25 chr4 129837371 129837492 -72490855 + L2 LINE L2 3158 3285 -28 396 296 162 41 chr4 129837502 129837921 -72490426 - L1M4 LINE L1 -3217 2929 2460 226 270 86 21 chr4 129837975 129838208 -72490139 - L1M4 LINE L1 -3769 2377 2130 754 201 75 35 chr4 129838654 129838853 -72489494 + MER96B DNA MER1_type? 208 414 -3 431 279 136 60 chr4 129838856 129839494 -72488853 - L1M4 LINE L1 -2098 4048 3362 23 33 0 0 chr4 129839718 129839748 -72488599 + AT_rich Low_complexity Low_complexity 1 30 0 267 252 27 118 chr4 129839954 129840193 -72488154 - L1ME LINE L1 -548 5601 5390 294 282 0 10 chr4 129840217 129840320 -72488027 - L1ME LINE L1 -2413 3716 3615 392 317 63 74 chr4 129840321 129840412 -72487935 - HAL1 LINE L1 -966 1541 1451 2572 65 0 0 chr4 129840412 129840720 -72487627 - AluY SINE Alu -3 308 1 392 317 63 74 chr4 129840720 129840912 -72487435 - HAL1 LINE L1 -1056 1451 1261 232 280 40 24 chr4 129841019 129841144 -72487203 - L1ME LINE L1 -5039 1080 954 21 0 0 0 chr4 129841195 129841216 -72487131 + AT_rich Low_complexity Low_complexity 1 21 0 36 23 0 0 chr4 129842306 129842349 -72485998 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr4 129843021 129843054 -72485293 + AT_rich Low_complexity Low_complexity 1 33 0 354 229 59 0 chr4 129843208 129843326 -72485021 - L1MC4a LINE L1 -1799 6009 5885 665 314 42 51 chr4 129843388 129843977 -72484370 + L1M4 LINE L1 2324 2907 -3239 481 158 62 0 chr4 129844035 129844134 -72484213 + L1PA8 LINE L1 6026 6185 0 200 54 54 0 chr4 129844134 129844171 -72484176 + A-rich Low_complexity Low_complexity 1 180 0 2026 114 30 91 chr4 129844202 129844429 -72483918 + Tigger2a DNA MER2_type 1 195 -2513 2197 71 7 4 chr4 129844429 129844709 -72483638 - AluY SINE Alu -30 281 1 2026 114 30 91 chr4 129844709 129844876 -72483471 + Tigger2a DNA MER2_type 195 371 -63 210 298 106 0 chr4 129845868 129845962 -72482385 + L2 LINE L2 3169 3272 0 661 238 16 49 chr4 129846603 129846788 -72481559 - MER63A DNA MER1_type -29 181 3 985 181 0 6 chr4 129847740 129847906 -72480441 + FAM SINE Alu 1 165 -10 23 0 0 0 chr4 129847906 129847929 -72480418 + AT_rich Low_complexity Low_complexity 1 23 0 2177 126 0 0 chr4 129848173 129848475 -72479872 + AluSx SINE Alu 1 302 -10 584 208 37 126 chr4 129848536 129848805 -72479542 - MIR SINE MIR -15 247 3 1007 303 161 37 chr4 129848856 129849582 -72478765 - L3 LINE CR1 -15 1562 747 387 259 7 93 chr4 129850675 129850760 -72477587 - MIR3 SINE MIR 0 208 138 1956 167 0 22 chr4 129850760 129851078 -72477269 + AluJo SINE Alu 1 311 -1 387 259 7 93 chr4 129851078 129851131 -72477216 - MIR3 SINE MIR -70 138 82 969 189 18 57 chr4 129851190 129851418 -72476929 - MER20 DNA MER1_type 0 219 1 2075 269 76 20 chr4 129853082 129853792 -72474555 + ERVL LTR ERVL 1803 2552 -2444 1726 316 51 10 chr4 129853818 129854665 -72473682 + ERVL LTR ERVL 2620 3535 -1905 463 250 80 20 chr4 129854873 129855073 -72473274 + ERVL LTR ERVL 3614 3825 -1171 2497 252 88 50 chr4 129855110 129855628 -72472719 + L1MC4 LINE L1 6701 7198 -844 2462 40 0 0 chr4 129855628 129855924 -72472423 + AluY SINE Alu 1 296 -15 2497 252 88 50 chr4 129855924 129856696 -72471651 + L1MC4 LINE L1 7198 8040 -2 531 110 0 24 chr4 129856753 129856835 -72471512 + MADE1 DNA Mariner 1 80 0 1586 194 4 4 chr4 129857043 129857355 -72470992 - AluJb SINE Alu 0 317 6 779 186 0 0 chr4 129857369 129857493 -72470854 - FLAM_C SINE Alu -17 126 3 333 155 0 0 chr4 129857770 129857828 -72470519 + T-rich Low_complexity Low_complexity 1 58 0 1526 138 101 52 chr4 129858622 129858969 -72469378 - L1MA4 LINE L1 0 6300 5937 229 352 23 11 chr4 129859514 129859602 -72468745 - L3 LINE CR1 -11 1566 1478 195 217 0 0 chr4 129860224 129860284 -72468063 + (TA)n Simple_repeat Simple_repeat 2 61 0 662 200 60 125 chr4 129860436 129860725 -72467622 + L1MCa LINE L1 1785 2091 -4335 2433 126 33 16 chr4 129860725 129861155 -72467192 + LTR23 LTR ERV1 1 437 0 662 200 60 125 chr4 129861155 129861327 -72467020 + L1MCa LINE L1 2091 2211 -4215 7348 125 45 26 chr4 129861327 129862601 -72465746 - HSMAR2 DNA Mariner -1 1301 3 662 200 60 125 chr4 129862601 129862659 -72465688 + L1MCa LINE L1 2211 2271 -4155 867 221 12 0 chr4 129862664 129862836 -72465511 + Tigger7 DNA MER2_type 1 174 -531 909 263 49 11 chr4 129862903 129863188 -72465159 + L1M4b LINE L1 11 306 -6553 520 245 0 0 chr4 129863340 129863434 -72464913 - FRAM SINE Alu -83 93 1 509 248 0 0 chr4 129863434 129863563 -72464784 + L1M4b LINE L1 3087 3215 -3923 549 138 0 0 chr4 129863628 129863715 -72464632 + AluJ/FRAM SINE Alu 214 300 -12 1950 214 34 2 chr4 129863718 129864218 -72464129 + L1M4b LINE L1 3306 3821 -3136 907 199 20 4 chr4 129864292 129864543 -72463804 + L1M4b LINE L1 3833 4087 -2870 317 227 6 0 chr4 129864547 129864637 -72463710 + FRAM/FAM SINE Alu 1 64 -102 4770 39 0 7 chr4 129865883 129866467 -72461880 + L1PA6 LINE L1 5573 6152 -2 1590 247 11 30 chr4 129867394 129867835 -72460512 - L2 LINE L2 -523 2791 2359 255 300 55 45 chr4 129868486 129868596 -72459751 + L3b LINE CR1 1249 1359 -224 1098 147 0 0 chr4 129868809 129868986 -72459361 - MSTC LTR MaLR -251 177 1 243 79 0 0 chr4 129869892 129869930 -72458417 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 198 0 0 0 chr4 129873341 129873363 -72454984 + (A)n Simple_repeat Simple_repeat 1 22 0 449 144 11 56 chr4 129874265 129874355 -72453992 - AluS SINE Alu -226 86 1 180 0 0 0 chr4 129874447 129874467 -72453880 + (TGG)n Simple_repeat Simple_repeat 1 20 0 2223 127 85 18 chr4 129874721 129875122 -72453225 + MSTA LTR MaLR 1 428 0 1218 167 5 0 chr4 129876438 129876624 -72451723 + MER5A DNA MER1_type 3 189 0 2132 189 41 20 chr4 129878167 129878660 -72449687 + MLT1D LTR MaLR 1 503 -2 2062 211 122 83 chr4 129878967 129879730 -72448617 + MER21B LTR ERV1 2 794 -69 1607 174 34 58 chr4 129882387 129882714 -72445633 - 7SLRNA srpRNA srpRNA -1 319 1 288 271 89 33 chr4 129884069 129884283 -72444064 + LTR16C LTR ERVL 263 488 -3 508 266 129 33 chr4 129885093 129885334 -72443013 + MLT1J1 LTR MaLR 52 315 -131 272 155 69 0 chr4 129885574 129885632 -72442715 + MLT1J2 LTR MaLR 375 436 -14 192 97 0 0 chr4 129886419 129886450 -72441897 + (TAA)n Simple_repeat Simple_repeat 3 33 0 232 311 27 0 chr4 129887823 129887897 -72440450 + LTR67 LTR ERVL 150 225 -332 431 289 15 24 chr4 129888789 129888973 -72439374 - MIR SINE MIR 0 262 13 245 175 35 0 chr4 129889621 129889678 -72438669 + MLT1K LTR MaLR 529 587 -1 357 335 193 0 chr4 129890368 129890529 -72437818 + MER91A DNA MER1_type 4 195 -1 275 277 176 8 chr4 129892049 129892168 -72436179 - MIR SINE MIR -78 184 46 209 221 221 0 chr4 129892302 129892384 -72435963 + MIR3 SINE MIR 99 206 -2 240 184 41 0 chr4 129892467 129892516 -72435831 + CT-rich Low_complexity Low_complexity 2 52 0 203 235 0 37 chr4 129892712 129892793 -72435554 + T-rich Low_complexity Low_complexity 5 82 0 22 0 0 0 chr4 129892811 129892833 -72435514 + AT_rich Low_complexity Low_complexity 1 22 0 776 266 0 0 chr4 129892950 129893138 -72435209 + MER5A DNA MER1_type 1 188 -1 2013 136 10 17 chr4 129893464 129893766 -72434581 - AluSx SINE Alu -12 300 1 412 241 0 0 chr4 129894175 129894258 -72434089 + MIR SINE MIR 63 145 -117 502 292 97 7 chr4 129894440 129894594 -72433753 + MIR SINE MIR 47 214 -48 523 271 22 11 chr4 129895407 129895588 -72432759 - LTR33 LTR ERVL -38 483 301 1920 188 53 22 chr4 129895704 129896157 -72432190 - MLT1C LTR MaLR 0 467 1 1602 236 59 13 chr4 129896308 129896783 -72431564 - L1ME3A LINE L1 -2 6168 5672 298 318 74 66 chr4 129896806 129897048 -72431299 + L2 LINE L2 3029 3272 0 185 376 32 11 chr4 129897631 129897724 -72430623 + L2 LINE L2 2554 2648 -666 319 317 45 60 chr4 129899069 129899268 -72429079 - L1MEd LINE L1 -5363 756 561 310 287 56 21 chr4 129899461 129899604 -72428743 - L1MEd LINE L1 -5969 150 3 23 92 0 0 chr4 129900462 129900527 -72427820 + AT_rich Low_complexity Low_complexity 1 65 0 23 0 0 0 chr4 129901133 129901156 -72427191 + AT_rich Low_complexity Low_complexity 1 23 0 209 286 54 0 chr4 129901353 129901409 -72426938 + MIR SINE MIR 17 75 -133 255 305 211 5 chr4 129901771 129901961 -72426386 + L2 LINE L2 2715 2943 -371 507 225 71 12 chr4 129902232 129902401 -72425946 - L1ME3A LINE L1 0 6170 5992 488 133 0 22 chr4 129902422 129902512 -72425835 - L1ME3A LINE L1 -230 5940 5853 290 265 119 49 chr4 129902965 129903150 -72425197 + MLT1K LTR MaLR 375 572 -16 483 73 0 0 chr4 129903755 129903823 -72424524 + (TC)n Simple_repeat Simple_repeat 1 68 0 195 333 61 9 chr4 129904057 129904171 -72424176 - L2 LINE L2 -234 3038 2919 1822 174 0 3 chr4 129905626 129905920 -72422427 - AluJb SINE Alu -8 304 12 1784 201 112 13 chr4 129906774 129907237 -72421110 - MLT1H LTR MaLR 0 549 41 765 172 16 0 chr4 129907353 129907481 -72420866 - FRAM SINE Alu -19 157 28 346 183 0 0 chr4 129907535 129907595 -72420752 + AluJ/FLAM SINE Alu 2 61 -241 31750 39 32 2 chr4 129907702 129911841 -72416506 - L1P LINE L1 -1867 4279 15 853 159 6 103 chr4 129911841 129912082 -72416265 - MLT2C1 LTR ERVL -197 200 1 6631 151 177 11 chr4 129912283 129913809 -72414538 - L1PBa LINE L1 -4345 2518 739 404 145 14 14 chr4 129914414 129914483 -72413864 - L2 LINE L2 -22 3291 3223 1772 184 3 13 chr4 129915488 129915803 -72412544 - AluJb SINE Alu 0 312 1 592 251 74 74 chr4 129915864 129916203 -72412144 - HAL1 LINE L1 0 2507 2169 230 338 7 28 chr4 129916323 129916465 -72411882 - L1MC5 LINE L1 -70 7891 7753 1281 278 79 8 chr4 129916472 129917004 -72411343 - HAL1 LINE L1 -327 2180 1611 649 260 101 45 chr4 129918349 129918657 -72409690 + MLT1J LTR MaLR 1 325 -186 1270 251 147 4 chr4 129918704 129919166 -72409181 + MLT1H LTR MaLR 1 528 -21 467 308 44 60 chr4 129919172 129919422 -72408925 + MLT1H LTR MaLR 201 446 -103 2148 116 48 0 chr4 129919491 129919784 -72408563 - AluSx SINE Alu -5 307 1 234 243 14 0 chr4 129919812 129919882 -72408465 + MLT1J LTR MaLR 439 509 -2 729 292 123 7 chr4 129919897 129920346 -72408001 + MLT1L LTR MaLR 115 615 0 1015 292 44 5 chr4 129921893 129922325 -72406022 + Charlie7 DNA MER1_type 115 563 -2049 577 252 61 24 chr4 129922353 129922599 -72405748 + Charlie7 DNA MER1_type 1728 1982 -630 333 161 0 0 chr4 129923521 129923577 -72404770 - L2 LINE L2 -1 3312 3257 2204 94 16 0 chr4 129923979 129924288 -72404059 + L1MC1 LINE L1 6014 6327 -6 198 0 0 0 chr4 129924288 129924310 -72404037 + (GA)n Simple_repeat Simple_repeat 1 22 0 607 160 135 0 chr4 129924434 129924590 -72403757 - MER96B DNA MER1_type? 0 417 241 1062 213 97 64 chr4 129925146 129925494 -72402853 + LTR16B LTR ERVL 8 374 -90 2079 128 29 61 chr4 129925494 129925869 -72402478 + THE1B LTR MaLR 1 363 -1 1062 213 97 64 chr4 129925869 129925942 -72402405 + LTR16B LTR ERVL 374 443 -21 223 338 61 61 chr4 129926390 129926588 -72401759 + L2 LINE L2 1732 1929 -1385 600 182 0 0 chr4 129926599 129926698 -72401649 - Tigger7 DNA MER2_type -2388 99 1 2334 89 0 3 chr4 129926720 129927023 -72401324 + AluY SINE Alu 1 302 -9 1310 231 11 0 chr4 129927385 129927645 -72400702 + Tigger7 DNA MER2_type 2 264 -469 384 148 193 23 chr4 129927643 129927731 -72400616 + Tigger7 DNA MER2_type 2385 2487 0 * 318 366 69 0 chr4 129927732 129927934 -72400413 + L2 LINE L2 2257 2472 -842 3537 196 66 49 chr4 129928144 129929208 -72399139 + L1MC4 LINE L1 6961 8042 0 2000 171 0 0 chr4 129929696 129929995 -72398352 - AluJb SINE Alu -13 299 1 245 259 0 35 chr4 129933072 129933130 -72395217 + L2 LINE L2 3214 3269 -3 459 169 285 23 chr4 129935082 129935212 -72393135 + MER63 DNA MER1_type 1 790 -272 233 313 43 52 chr4 129935354 129935469 -72392878 + L2 LINE L2 3148 3261 -11 6024 178 13 16 chr4 129935470 129937194 -72391153 + L1PB4 LINE L1 3964 5684 -472 2331 60 0 13 chr4 129937194 129937514 -72390833 + AluY SINE Alu 1 311 0 6024 178 13 16 chr4 129937514 129937976 -72390371 + L1PB4 LINE L1 5684 6146 -10 793 189 0 65 chr4 129938252 129938453 -72389894 - L1 LINE L1 -2154 3992 3805 2293 81 3 3 chr4 129938464 129938772 -72389575 + AluY SINE Alu 1 308 -3 5945 187 11 24 chr4 129938774 129940169 -72388178 + L1 LINE L1 3986 5362 -784 1883 161 0 0 chr4 129940175 129940486 -72387861 + AluJb SINE Alu 1 311 0 381 54 14 81 chr4 129940498 129940572 -72387775 + L1PB3 LINE L1 5303 5371 -783 38 0 0 0 chr4 129940605 129940643 -72387704 + AT_rich Low_complexity Low_complexity 1 38 0 2653 152 58 1 chr4 129940753 129941485 -72386862 + L1PB3 LINE L1 5365 6153 -1 2069 142 0 19 chr4 129941595 129941913 -72386434 + AluSx SINE Alu 1 312 0 1741 155 50 32 chr4 129941936 129942277 -72386070 - MER7A DNA MER2_type -1 345 1 2491 54 0 3 chr4 129942548 129942844 -72385503 - AluY SINE Alu -16 295 1 181 277 21 0 chr4 129944441 129944488 -72383859 - L3 LINE CR1 -491 1086 1039 28656 98 9 9 chr4 129944767 129949994 -72378353 - L1PA7 LINE L1 -5 6149 931 972 307 72 27 chr4 129950664 129951085 -72377262 + L2 LINE L2 2185 2632 -682 499 212 18 9 chr4 129951085 129951198 -72377149 + MER81 DNA DNA 1 114 0 972 307 72 27 chr4 129951198 129951265 -72377082 + L2 LINE L2 2632 2695 -619 2234 206 86 46 chr4 129951272 129951972 -72376375 + L1ME2 LINE L1 5417 6144 -20 26 30 0 0 chr4 129951982 129952015 -72376332 + AT_rich Low_complexity Low_complexity 1 33 0 698 300 85 47 chr4 129952031 129952606 -72375741 + L2 LINE L2 2706 3310 -3 4193 237 43 87 chr4 130052932 130055131 -72273216 + L1P3 LINE L1 83 2197 -4264 * 10522 127 23 5 chr4 130055128 130056819 -72271528 + L1P LINE L1 3552 5273 -873 2910 0 0 0 chr4 130057594 130057905 -72270442 - AluYa5 SINE Alu 0 311 1 303 171 304 13 chr4 130057917 130058075 -72270272 + Charlie2 DNA MER1_type 2378 2581 -281 419 165 73 28 chr4 130058095 130058204 -72270143 - L1MD3 LINE L1 -7 7988 7875 1828 149 171 46 chr4 130058204 130058679 -72269668 - LTR64 LTR ERVK 0 558 25 2507 185 176 74 chr4 130058731 130059210 -72269137 - L1MD3 LINE L1 -110 7885 7456 336 164 0 0 chr4 130059210 130059265 -72269082 - MLT1F1 LTR MaLR -508 59 5 2507 185 176 74 chr4 130059265 130059567 -72268780 - L1MD3 LINE L1 -539 7456 6965 1051 188 5 71 chr4 130059606 130059830 -72268517 - AluJb SINE Alu -102 210 2 1657 183 139 120 chr4 130059830 130060470 -72267877 - L1MD3 LINE L1 -877 6985 6280 2590 173 83 2 chr4 130060476 130061020 -72267327 - L1MC4 LINE L1 -1914 6128 5541 274 283 71 9 chr4 130061208 130061321 -72267026 - L1MCa LINE L1 -6238 188 69 762 188 66 24 chr4 130061357 130061570 -72266777 + Charlie2 DNA MER1_type 2600 2821 -41 678 168 65 7 chr4 130061724 130061879 -72266468 + MER96B DNA MER1_type? 11 174 -243 351 219 62 10 chr4 130061928 130062024 -72266323 + Charlie2 DNA MER1_type 2600 2700 -162 2075 139 0 3 chr4 130062462 130062756 -72265591 + AluSx SINE Alu 1 293 -19 335 295 86 7 chr4 130062891 130063030 -72265317 + L2 LINE L2 2526 2675 -639 1205 154 119 39 chr4 130063068 130063328 -72265019 - MSTA LTR MaLR -147 281 1 458 276 71 0 chr4 130064130 130064257 -72264090 + MER91A DNA MER1_type 25 160 -36 757 239 40 5 chr4 130064295 130064496 -72263851 + L2 LINE L2 2455 2662 -652 4156 103 21 101 chr4 130064535 130065264 -72263083 - L1PB4 LINE L1 -28 6128 5467 1585 127 62 4 chr4 130065264 130065508 -72262839 - AluSx SINE Alu -10 302 45 4156 103 21 101 chr4 130065508 130065581 -72262766 - L1PB4 LINE L1 -689 5467 5390 2315 41 27 0 chr4 130065579 130066036 -72262311 - L1P3 LINE L1 -602 5552 5086 * 994 194 40 28 chr4 130066355 130066417 -72261930 + L1M1 LINE L1 3293 3353 -4212 1715 197 0 10 chr4 130066417 130066722 -72261625 - AluJo SINE Alu -10 302 1 994 194 40 28 chr4 130066722 130067014 -72261333 + L1M1 LINE L1 3353 3637 -3928 * 8286 145 16 8 chr4 130067011 130068824 -72259523 + L1P4 LINE L1 3820 5642 -519 7964 151 53 39 chr4 130068825 130071512 -72256835 + HUERS-P1 LTR ERV1 2572 6262 -1 4480 113 6 46 chr4 130071513 130072233 -72256114 + LTR8 LTR ERV1 1 691 0 1458 185 67 27 chr4 130072252 130072370 -72255977 - LTR49-int LTR ERV1 -4572 1759 1647 189 0 0 0 chr4 130072370 130072391 -72255956 + (TC)n Simple_repeat Simple_repeat 1 21 0 1458 185 67 27 chr4 130072391 130072645 -72255702 - LTR49-int LTR ERV1 -4684 1647 1372 1200 184 157 39 chr4 130072759 130072859 -72255488 - LTR49-int LTR ERV1 -4935 1396 1309 3321 110 20 10 chr4 130072859 130073361 -72254986 + MER84 LTR ERV1 1 507 0 1200 184 157 39 chr4 130073361 130073592 -72254755 - LTR49-int LTR ERV1 -5022 1309 1026 24 53 0 0 chr4 130073969 130074007 -72254340 + AT_rich Low_complexity Low_complexity 1 38 0 3358 166 40 2 chr4 130074790 130075333 -72253014 + MER72 LTR ERV1 1 564 -158 2589 232 45 69 chr4 130075747 130076562 -72251785 + L1M1 LINE L1 2964 3742 -3823 2239 122 0 0 chr4 130076562 130076856 -72251491 - AluSx SINE Alu -18 294 1 2589 232 45 69 chr4 130076856 130077558 -72250789 + L1M1 LINE L1 3742 4459 -3106 266 163 0 0 chr4 130077561 130077604 -72250743 + Alu SINE Alu 3 45 -256 349 135 10 167 chr4 130077604 130077634 -72250713 + L1M1 LINE L1 4432 4465 -3100 2078 125 6 13 chr4 130077634 130077947 -72250400 + AluSx SINE Alu 1 311 -1 349 135 10 167 chr4 130077947 130078012 -72250335 + L1M1 LINE L1 4465 4512 -3053 432 55 0 0 chr4 130078306 130078361 -72249986 + (GA)n Simple_repeat Simple_repeat 2 56 0 216 0 0 0 chr4 130078361 130078385 -72249962 + (TG)n Simple_repeat Simple_repeat 2 25 0 1707 80 8 25 chr4 130078397 130078634 -72249713 - AluY SINE Alu 0 311 79 240 35 0 0 chr4 130078846 130078875 -72249472 + (T)n Simple_repeat Simple_repeat 1 29 0 314 380 56 23 chr4 130079018 130079323 -72249024 - L1ME LINE L1 -5643 427 113 454 336 7 7 chr4 130079478 130079627 -72248720 - LTR33 LTR ERVL -363 158 10 864 294 54 72 chr4 130079926 130080480 -72247867 - ERVL LTR ERVL -430 5334 4791 754 203 96 35 chr4 130080880 130081077 -72247270 - LTR33 LTR ERVL -8 513 305 433 293 0 8 chr4 130081193 130081316 -72247031 - LTR33 LTR ERVL -364 157 36 33 0 0 0 chr4 130081814 130081847 -72246500 + AT_rich Low_complexity Low_complexity 1 33 0 249 209 30 30 chr4 130084380 130084447 -72243900 - MIR3 SINE MIR -7 201 135 818 276 58 8 chr4 130085625 130085868 -72242479 - MIR SINE MIR 0 262 8 523 211 7 78 chr4 130087862 130088004 -72240343 - MIR SINE MIR -118 144 13 21 0 0 0 chr4 130088455 130088476 -72239871 + AT_rich Low_complexity Low_complexity 1 21 0 403 306 0 27 chr4 130089595 130089706 -72238641 - MIR SINE MIR -65 143 36 3008 57 7 25 chr4 130089909 130090350 -72237997 - L1PA4 LINE L1 -3 6152 5720 709 262 38 6 chr4 130091034 130091217 -72237130 - MIR SINE MIR 0 262 74 23 86 0 0 chr4 130092029 130092087 -72236260 + AT_rich Low_complexity Low_complexity 1 58 0 2841 152 20 24 chr4 130092570 130093109 -72235238 - L1PA16 LINE L1 -6 6160 5624 1913 177 7 0 chr4 130093280 130093590 -72234757 + AluSx SINE Alu 1 312 0 25316 144 13 23 chr4 130093614 130097227 -72231120 + L1PA8A LINE L1 714 4247 -2199 2489 84 0 0 chr4 130097227 130097538 -72230809 + AluY SINE Alu 1 311 0 25316 144 13 23 chr4 130097538 130099687 -72228660 + L1PA8A LINE L1 4247 6417 -29 2293 100 0 0 chr4 130099715 130100015 -72228332 + AluSx SINE Alu 3 302 -10 418 328 156 0 chr4 130100721 130100913 -72227434 - MIR SINE MIR -38 224 3 193 289 77 0 chr4 130101763 130101815 -72226532 + L2 LINE L2 3251 3306 -7 186 333 222 12 chr4 130102477 130102558 -72225789 + MER5A DNA MER1_type 74 171 -18 1091 209 163 16 chr4 130102567 130102825 -72225522 + AluJo SINE Alu 1 296 -6 251 333 0 11 chr4 130102904 130102994 -72225353 - MER5B DNA MER1_type -4 174 86 22 0 0 0 chr4 130103450 130103472 -72224875 + AT_rich Low_complexity Low_complexity 1 22 0 196 287 315 0 chr4 130104530 130104673 -72223674 - MIR3 SINE MIR -2 206 19 861 276 93 36 chr4 130106342 130106632 -72221715 + Charlie2 DNA MER1_type 1856 2185 -677 657 176 0 29 chr4 130106632 130106768 -72221579 + FLAM_A SINE Alu 1 132 -1 861 276 93 36 chr4 130106768 130106952 -72221395 + Charlie2 DNA MER1_type 2185 2357 -505 933 208 11 11 chr4 130106968 130107233 -72221114 - AluYa5 SINE Alu 0 311 47 42824 47 3 15 chr4 130107333 130112833 -72215514 - L1P2 LINE L1 -719 5436 1 26 0 0 0 chr4 130113637 130113663 -72214684 + AT_rich Low_complexity Low_complexity 1 26 0 473 226 8 8 chr4 130113665 130113789 -72214558 - L1ME4a LINE L1 -4 6117 5994 483 255 28 35 chr4 130114621 130114766 -72213581 + MLT1J LTR MaLR 1 144 -367 * 560 270 102 9 chr4 130114764 130114990 -72213357 + MLT1J LTR MaLR 263 610 -5 4849 157 38 43 chr4 130115209 130115402 -72212945 + L1MB7 LINE L1 4836 5028 -1156 309 36 455 0 chr4 130115402 130115457 -72212890 + MADE1 DNA Mariner 1 80 0 4849 157 38 43 chr4 130115457 130116563 -72211784 + L1MB7 LINE L1 5028 6175 -9 291 272 48 88 chr4 130117245 130117499 -72210848 + MER102a DNA MER1_type 46 288 -1129 2584 107 3 6 chr4 130117499 130117864 -72210483 + THE1B LTR MaLR 1 364 0 291 272 48 88 chr4 130117864 130117903 -72210444 + MER102a DNA MER1_type 288 327 -3 195 333 14 71 chr4 130117927 130118068 -72210279 + MIR SINE MIR 80 212 -50 517 128 34 51 chr4 130118147 130118264 -72210083 - L1MA9 LINE L1 0 6312 6198 10506 129 25 30 chr4 130118264 130120005 -72208342 + Tigger1 DNA MER2_type 1 1731 -687 1027 110 0 0 chr4 130120011 130120180 -72208167 + AluSg/x SINE Alu 147 315 0 1905 128 110 6 chr4 130120180 130120516 -72207831 + Tigger1 DNA MER2_type 1738 2108 -310 634 154 32 16 chr4 130120524 130120647 -72207700 + Tigger1 DNA MER2_type 2293 2417 -1 9851 169 44 29 chr4 130120653 130121931 -72206416 - L1MA9 LINE L1 -118 6194 4937 204 40 0 0 chr4 130121931 130121956 -72206391 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2290 127 23 3 chr4 130121956 130122310 -72206037 - L1PA15 LINE L1 -14 6151 5791 9851 169 44 29 chr4 130122310 130124146 -72204201 - L1MA9 LINE L1 -1374 4938 3029 5513 89 24 6 chr4 130124528 130125310 -72203037 + L1PA11 LINE L1 5379 6174 0 253 218 55 0 chr4 130126457 130126512 -72201835 + MIR SINE MIR 203 260 -2 221 224 20 0 chr4 130126952 130127001 -72201346 + (TA)n Simple_repeat Simple_repeat 2 51 0 1928 118 24 14 chr4 130127247 130127544 -72200803 - AluSx SINE Alu -12 300 1 21 36 0 0 chr4 130128483 130128511 -72199836 + AT_rich Low_complexity Low_complexity 1 28 0 251 220 43 102 chr4 130128665 130128851 -72199496 - L1ME4a LINE L1 -3 6118 5944 1499 172 8 38 chr4 130129052 130129319 -72199028 + AluJo SINE Alu 38 296 -16 21 0 0 0 chr4 130129422 130129443 -72198904 + AT_rich Low_complexity Low_complexity 1 21 0 1350 156 138 14 chr4 130129529 130129804 -72198543 + Tigger1 DNA MER2_type 1 309 -2109 * 11429 113 82 6 chr4 130129802 130131452 -72196895 + Tigger1 DNA MER2_type 456 2261 -157 2098 112 10 0 chr4 130131452 130131746 -72196601 - AluSx SINE Alu -15 297 1 11429 113 82 6 chr4 130131746 130131918 -72196429 + Tigger1 DNA MER2_type 2261 2418 0 21 57 0 0 chr4 130132295 130132330 -72196017 + AT_rich Low_complexity Low_complexity 1 35 0 274 280 97 0 chr4 130133606 130133699 -72194648 - L2 LINE L2 -37 3276 3175 276 254 16 0 chr4 130133836 130133899 -72194448 + L2 LINE L2 3234 3297 -16 397 266 98 37 chr4 130134135 130134281 -72194066 + L2 LINE L2 1876 2041 -1273 2128 126 56 0 chr4 130134281 130134623 -72193724 - MER46B DNA MER2_type 0 236 1 397 266 98 37 chr4 130134623 130134690 -72193657 + L2 LINE L2 2041 2102 -1212 203 312 161 21 chr4 130134845 130134938 -72193409 + L2 LINE L2 3207 3312 -1 31 26 0 0 chr4 130137228 130137266 -72191081 + AT_rich Low_complexity Low_complexity 1 38 0 1380 245 109 38 chr4 130137535 130138041 -72190306 - MER34 LTR ERV1 0 542 1 1850 185 0 0 chr4 130139273 130139571 -72188776 - AluJo SINE Alu -14 298 1 270 56 0 0 chr4 130141097 130141133 -72187214 + (TA)n Simple_repeat Simple_repeat 1 36 0 678 181 175 6 chr4 130143168 130143334 -72185013 + L1MB7 LINE L1 5981 6174 -10 23 0 0 0 chr4 130143545 130143568 -72184779 + AT_rich Low_complexity Low_complexity 1 23 0 338 382 21 0 chr4 130144136 130144280 -72184067 - MIR3 SINE MIR -1 207 61 2291 98 0 0 chr4 130144285 130144580 -72183767 + AluSx SINE Alu 1 295 -17 893 267 22 9 chr4 130145568 130145793 -72182554 - MIR SINE MIR -27 235 8 3326 213 68 46 chr4 130146079 130146775 -72181572 - L1MCa LINE L1 -2599 3827 3148 2195 120 0 0 chr4 130146775 130147074 -72181273 - AluSg1 SINE Alu -10 299 1 3326 213 68 46 chr4 130147074 130147390 -72180957 - L1MCa LINE L1 -3278 3148 2840 1751 176 3 17 chr4 130147390 130147686 -72180661 - AluJo SINE Alu -20 292 1 3326 213 68 46 chr4 130147686 130148268 -72180079 - L1MCa LINE L1 -3586 2840 2199 360 125 54 0 chr4 130148268 130148324 -72180023 - Tigger5 DNA MER2_type 0 2323 2265 357 206 0 0 chr4 130148332 130148395 -72179952 + Tigger5 DNA MER2_type 2254 2316 -7 466 192 13 0 chr4 130148398 130148476 -72179871 - Tigger5 DNA MER2_type -2244 79 1 1015 138 20 25 chr4 130148476 130148672 -72179675 - L1MCa LINE L1 -4226 2200 2006 214 281 0 16 chr4 130148672 130148736 -72179611 + (CATATA)n Simple_repeat Simple_repeat 1 63 0 882 178 139 8 chr4 130148751 130149010 -72179337 - L1MCa LINE L1 -4362 2064 1772 493 283 93 82 chr4 130149122 130149596 -72178751 + L1MEc LINE L1 1319 1797 -4599 690 228 67 61 chr4 130149622 130149822 -72178525 + L1MEc LINE L1 1884 2081 -4134 1283 129 38 54 chr4 130149822 130150062 -72178285 - MER46A DNA MER2_type 0 236 1 690 228 67 61 chr4 130150062 130150492 -72177855 + L1MEc LINE L1 2081 2471 -3744 24668 112 21 44 chr4 130150662 130154885 -72173462 + L1PA7 LINE L1 396 4523 -1623 1744 59 34 8 chr4 130154885 130155122 -72173225 + L1PA7 LINE L1 5912 6154 0 6893 51 4 27 chr4 130155131 130156779 -72171568 + L1PA7 LINE L1 4510 6147 -7 236 258 21 0 chr4 130156811 130156904 -72171443 + L1ME LINE L1 750 844 -5226 260 216 91 0 chr4 130156943 130157031 -72171316 + L1ME LINE L1 883 978 -5283 * 1777 238 134 67 chr4 130157028 130157404 -72170943 + L1MB4 LINE L1 3561 3910 -2236 1988 97 7 0 chr4 130157404 130157673 -72170674 + AluSg SINE Alu 40 310 0 1777 238 134 67 chr4 130157673 130158588 -72169759 + L1MB4 LINE L1 3910 4939 -1207 3231 166 33 29 chr4 130158614 130158891 -72169456 + L1MB4 LINE L1 5477 5751 -429 2520 47 0 3 chr4 130158891 130159188 -72169159 - AluY SINE Alu -15 296 1 3231 166 33 29 chr4 130159188 130159611 -72168736 + L1MB4 LINE L1 5751 6180 0 1714 202 143 43 chr4 130159611 130160219 -72168128 + L1MD2 LINE L1 5688 6356 -3 2101 111 20 3 chr4 130160325 130160631 -72167716 + AluSx SINE Alu 1 311 -1 1747 179 0 10 chr4 130160796 130161098 -72167249 - AluJo SINE Alu -13 299 1 911 216 35 65 chr4 130162621 130162853 -72165494 - MER8 DNA MER2_type -14 225 1 2117 100 3 7 chr4 130163567 130163857 -72164490 - AluSx SINE Alu -22 290 2 310 270 61 17 chr4 130164036 130164151 -72164196 + MER5A DNA MER1_type 3 122 -67 191 270 139 35 chr4 130165197 130165312 -72163035 - MIR3 SINE MIR -43 165 39 299 227 0 13 chr4 130165932 130166007 -72162340 + MER116 DNA Mariner 6 79 -1 291 293 94 9 chr4 130166586 130166692 -72161655 + L2 LINE L2 3158 3272 0 1400 174 71 14 chr4 130167416 130167698 -72160649 - AluJo SINE Alu -14 298 1 264 162 48 86 chr4 130167717 130167822 -72160525 - L1ME4a LINE L1 0 6121 6021 1627 225 145 49 chr4 130167932 130168483 -72159864 - L1ME1 LINE L1 -4 6231 5628 * 9451 237 63 36 chr4 130168467 130169029 -72159318 - L1ME1 LINE L1 -909 5306 4760 2127 110 33 3 chr4 130169029 130169330 -72159017 + AluSx SINE Alu 2 311 -1 9451 237 63 36 chr4 130169330 130171004 -72157343 - L1ME1 LINE L1 -1455 4760 2978 1409 219 49 6 chr4 130171004 130171333 -72157014 + MER2 DNA MER2_type 2 344 0 9451 237 63 36 chr4 130171333 130172825 -72155522 - L1ME1 LINE L1 -3237 2978 1527 1317 194 78 0 chr4 130172828 130173121 -72155226 - L1MB7 LINE L1 -8 6176 5861 639 163 113 0 chr4 130173127 130173268 -72155079 - L1MB7 LINE L1 -1320 4826 4670 1090 148 6 27 chr4 130173867 130174050 -72154297 - FRAM SINE Alu -1 175 1 343 279 57 118 chr4 130174482 130174601 -72153746 + L1ME4a LINE L1 5764 5889 -232 2238 116 0 0 chr4 130174601 130174904 -72153443 + AluSx SINE Alu 1 303 -9 343 279 57 118 chr4 130174904 130175150 -72153197 + L1ME4a LINE L1 5889 6107 -14 467 259 184 16 chr4 130176020 130176205 -72152142 + L1ME2 LINE L1 5940 6155 -9 901 251 105 17 chr4 130176376 130176825 -72151522 + MLT1H LTR MaLR 8 549 0 318 326 120 14 chr4 130176830 130177255 -72151092 - L1MB7 LINE L1 -1806 4340 3878 5280 87 6 1 chr4 130177495 130178222 -72150125 - L1PA13 LINE L1 -19 6144 5415 2401 52 0 42 chr4 130178414 130178724 -72149623 + AluY SINE Alu 11 307 -4 325 315 95 39 chr4 130178966 130179576 -72148771 - L1MB7 LINE L1 -3085 3061 2418 2069 125 3 7 chr4 130179669 130179973 -72148374 - AluSq SINE Alu -10 303 1 1675 174 3 20 chr4 130180267 130180566 -72147781 - AluJo SINE Alu -4 308 15 522 296 41 17 chr4 130180762 130180934 -72147413 + MIR SINE MIR 6 181 -81 301 313 135 12 chr4 130180953 130181116 -72147231 - MER5A DNA MER1_type -3 186 4 350 290 70 0 chr4 130181123 130181223 -72147124 + MIR SINE MIR 34 140 -122 30 0 0 0 chr4 130181223 130181253 -72147094 + AT_rich Low_complexity Low_complexity 1 30 0 31 44 0 0 chr4 130182867 130182912 -72145435 + AT_rich Low_complexity Low_complexity 1 45 0 234 0 0 0 chr4 130183147 130183173 -72145174 + (TA)n Simple_repeat Simple_repeat 2 27 0 288 289 102 47 chr4 130183199 130183327 -72145020 + MIR3 SINE MIR 38 172 -36 869 207 80 21 chr4 130183783 130183971 -72144376 + LTR48 LTR ERV1 1 199 -588 1333 161 26 0 chr4 130185213 130185443 -72142904 - MER46A DNA MER2_type 0 236 1 954 144 20 25 chr4 130186321 130186523 -72141824 + L1MA4 LINE L1 6096 6296 -4 1842 117 62 0 chr4 130187045 130187336 -72141011 + AluSg SINE Alu 1 309 -1 1384 119 51 0 chr4 130187397 130187633 -72140714 + L1MA3 LINE L1 6058 6305 0 1581 194 10 3 chr4 130188129 130188422 -72139925 - AluJo SINE Alu -17 295 1 1673 167 10 10 chr4 130188449 130188755 -72139592 + AluSq SINE Alu 1 306 -7 246 214 0 0 chr4 130189898 130189954 -72138393 + MADE1 DNA Mariner 1 56 -24 277 330 150 33 chr4 130189965 130190444 -72137903 - L2 LINE L2 -11 3302 2742 4502 172 34 6 chr4 130190471 130191408 -72136939 + L1MA9 LINE L1 5164 6124 -188 420 316 96 31 chr4 130191465 130191756 -72136591 - L2 LINE L2 -1317 1997 1688 303 340 83 6 chr4 130192109 130192265 -72136082 - L2 LINE L2 -1734 1580 1413 17666 156 33 10 chr4 130192306 130198673 -72129674 + L1MA5A LINE L1 1 6548 -465 270 0 0 0 chr4 130198673 130198703 -72129644 + (CA)n Simple_repeat Simple_repeat 2 31 0 17666 156 33 10 chr4 130198703 130198892 -72129455 + L1MA5A LINE L1 6548 6731 -282 1852 130 10 3 chr4 130198717 130199017 -72129330 + L1PB1 LINE L1 6559 6860 -7 * 441 234 109 84 chr4 130199499 130199720 -72128627 - MIR SINE MIR -17 245 20 490 238 205 0 chr4 130201029 130201151 -72127196 - MER20B DNA MER1_type -573 210 64 2126 87 58 0 chr4 130201343 130201620 -72126727 - AluSg SINE Alu -17 293 1 360 111 4 12 chr4 130201653 130201718 -72126629 + Alu SINE Alu 1 48 -260 3341 60 4 4 chr4 130201718 130202169 -72126178 - L1P LINE L1 -4871 1275 825 6787 174 40 23 chr4 130202281 130203659 -72124688 - L1MCa LINE L1 -5007 1419 19 22 0 0 0 chr4 130203974 130203996 -72124351 + AT_rich Low_complexity Low_complexity 1 22 0 25 65 0 0 chr4 130204900 130204946 -72123401 + AT_rich Low_complexity Low_complexity 1 46 0 315 0 0 0 chr4 130207385 130207420 -72120927 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 1132 152 10 20 chr4 130207488 130207686 -72120661 + MER2 DNA MER2_type 2 197 -148 229 261 169 0 chr4 130207728 130207793 -72120554 + MER2 DNA MER2_type 270 345 0 32 43 0 0 chr4 130208302 130208348 -72119999 + AT_rich Low_complexity Low_complexity 1 46 0 32 0 0 0 chr4 130208774 130208806 -72119541 + AT_rich Low_complexity Low_complexity 1 32 0 28 0 0 0 chr4 130208839 130208867 -72119480 + AT_rich Low_complexity Low_complexity 1 28 0 346 311 107 38 chr4 130209322 130209904 -72118443 - HAL1 LINE L1 -704 1803 1182 4613 169 46 9 chr4 130210013 130211239 -72117108 - L1MB1 LINE L1 -1 6167 4901 288 294 0 0 chr4 130211396 130211464 -72116883 + L2 LINE L2 3200 3267 -5 302 208 112 48 chr4 130212403 130212528 -72115819 + L1MC5 LINE L1 7795 7927 -34 297 171 29 29 chr4 130212654 130212724 -72115623 + MER116 DNA Mariner 11 80 0 7909 8 1 0 chr4 130212916 130213850 -72114497 - L1HS LINE L1 0 6155 5221 389 315 185 0 chr4 130214393 130214555 -72113792 - MIR3 SINE MIR 0 208 17 23 33 0 0 chr4 130214591 130214621 -72113726 + AT_rich Low_complexity Low_complexity 1 30 0 1810 235 89 22 chr4 130215184 130215690 -72112657 - MLT1F LTR MaLR -2 540 1 403 267 150 0 chr4 130216755 130216875 -72111472 - MIR3 SINE MIR -7 201 64 1827 147 48 0 chr4 130217493 130217806 -72110541 - MER47A DNA MER2_type 0 366 39 206 180 40 40 chr4 130218104 130218204 -72110143 + (TA)n Simple_repeat Simple_repeat 1 100 0 1429 155 23 84 chr4 130218452 130218761 -72109586 + AluJb SINE Alu 1 290 -22 1090 193 16 57 chr4 130218867 130219111 -72109236 + MER8 DNA MER2_type 6 239 0 32 57 0 0 chr4 130219738 130219791 -72108556 + AT_rich Low_complexity Low_complexity 1 53 0 700 232 39 39 chr4 130220404 130220585 -72107762 + MER20 DNA MER1_type 33 213 -6 227 165 121 55 chr4 130221077 130221168 -72107179 - L1ME4a LINE L1 -4 6117 6021 283 184 105 26 chr4 130221283 130221359 -72106988 - L1ME4a LINE L1 -255 5866 5785 665 292 76 11 chr4 130221384 130221691 -72106656 - L1ME4a LINE L1 -394 5727 5401 941 294 120 29 chr4 130222327 130222617 -72105730 - L2 LINE L2 -558 2756 2494 2126 115 0 0 chr4 130222617 130222939 -72105408 - AluSg SINE Alu 0 310 1 941 294 120 29 chr4 130222939 130223138 -72105209 - L2 LINE L2 -820 2494 2222 230 337 0 71 chr4 130225568 130225666 -72102681 - L2 LINE L2 -189 3083 2993 290 351 125 36 chr4 130225813 130226260 -72102087 - L2 LINE L2 -433 2881 2395 410 266 14 58 chr4 130227148 130227287 -72101060 - L2 LINE L2 -1 3312 3180 25 0 0 0 chr4 130230415 130230440 -72097907 + AT_rich Low_complexity Low_complexity 1 25 0 1270 259 98 92 chr4 130230719 130231495 -72096852 - L2 LINE L2 -4 3309 2527 301 250 146 42 chr4 130231499 130231691 -72096656 - L1ME4a LINE L1 -5 6116 5905 293 272 82 40 chr4 130231748 130232013 -72096334 - L1MC4 LINE L1 -313 7729 7347 470 234 98 102 chr4 130232020 130232255 -72096092 + L1MC4 LINE L1 7503 7828 -167 511 221 207 0 chr4 130232257 130232402 -72095945 - MER5A DNA MER1_type -6 183 9 267 344 169 13 chr4 130232420 130232574 -72095773 + MIR SINE MIR 18 195 -67 2301 113 0 0 chr4 130232635 130232945 -72095402 - AluSx SINE Alu -2 310 1 201 74 0 0 chr4 130234943 130234970 -72093377 + (T)n Simple_repeat Simple_repeat 1 27 0 2171 94 7 3 chr4 130235076 130235362 -72092985 - AluSg SINE Alu -23 287 1 306 283 0 22 chr4 130235962 130236054 -72092293 + L1MC4 LINE L1 6614 6703 -1339 398 293 26 9 chr4 130236520 130236636 -72091711 + MIR SINE MIR 73 190 -72 1032 150 140 5 chr4 130236644 130236851 -72091496 + MER46A DNA MER2_type 2 236 0 1892 128 13 33 chr4 130237678 130237983 -72090364 + AluJo SINE Alu 1 299 -13 297 51 0 0 chr4 130239224 130239263 -72089084 + MADE1 DNA Mariner 42 80 0 422 158 42 21 chr4 130239386 130239481 -72088866 + L1MB8 LINE L1 6082 6178 0 1259 33 0 7 chr4 130239493 130239646 -72088701 + L1PA3 LINE L1 6001 6152 -3 23 0 0 0 chr4 130239808 130239831 -72088516 + AT_rich Low_complexity Low_complexity 1 23 0 531 285 72 34 chr4 130241320 130241527 -72086820 + MIR SINE MIR 3 217 -45 22 80 0 0 chr4 130242703 130242753 -72085594 + AT_rich Low_complexity Low_complexity 1 50 0 846 239 105 36 chr4 130243269 130243575 -72084772 - MER2 DNA MER2_type -17 328 2 242 269 58 77 chr4 130244070 130244174 -72084173 - MIR3 SINE MIR -97 111 10 684 287 52 58 chr4 130244333 130244678 -72083669 + L1MC4a LINE L1 5493 5835 -1973 326 273 160 10 chr4 130244904 130245098 -72083249 - MER5C DNA MER1_type -2 322 100 32319 106 15 31 chr4 130245110 130250274 -72078073 + L1P LINE L1 12 5093 -1053 1561 91 5 5 chr4 130300274 130300493 -72027854 - L1P LINE L1 -5926 220 2 3806 98 24 69 chr4 130300493 130300855 -72027492 - L1M1 LINE L1 -3895 3670 3352 1726 198 0 0 chr4 130300855 130301148 -72027199 - AluJb SINE Alu -19 293 1 3806 98 24 69 chr4 130301148 130301481 -72026866 - L1M1 LINE L1 -4213 3352 3006 30 77 0 0 chr4 130303270 130303335 -72025012 + AT_rich Low_complexity Low_complexity 1 65 0 375 95 19 38 chr4 130304954 130305059 -72023288 + (TA)n Simple_repeat Simple_repeat 2 104 0 224 295 0 3 chr4 130305563 130305623 -72022724 - MIR SINE MIR -101 107 48 292 319 0 0 chr4 130305677 130305749 -72022598 - L2 LINE L2 -10 3303 3232 1485 154 70 11 chr4 130305876 130306149 -72022198 + AluJo SINE Alu 1 289 -23 186 133 0 0 chr4 130307341 130307371 -72020976 + (TA)n Simple_repeat Simple_repeat 1 30 0 247 306 19 9 chr4 130307411 130307519 -72020828 + (CATATA)n Simple_repeat Simple_repeat 2 110 0 204 364 85 0 chr4 130308312 130308441 -72019906 - L2 LINE L2 0 3272 3133 233 244 0 49 chr4 130308954 130309077 -72019270 + (TATATG)n Simple_repeat Simple_repeat 6 122 0 293 298 113 8 chr4 130310600 130310724 -72017623 + MIR SINE MIR 25 161 -101 270 304 109 0 chr4 130311196 130311288 -72017059 - MIR SINE MIR -12 250 149 273 263 135 30 chr4 130311786 130311919 -72016428 - MIR SINE MIR -115 147 1 230 190 0 17 chr4 130312385 130312443 -72015904 + CT-rich Low_complexity Low_complexity 2 58 0 1766 157 63 101 chr4 130312707 130312747 -72015600 - MLT2D LTR ERVL -3 411 371 428 0 19 0 chr4 130312747 130312799 -72015548 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 1766 157 63 101 chr4 130312799 130313184 -72015163 - MLT2D LTR ERVL -43 371 2 276 143 0 0 chr4 130313764 130313820 -72014527 + (TG)n Simple_repeat Simple_repeat 2 57 0 238 242 105 46 chr4 130313998 130314151 -72014196 - L2 LINE L2 -243 3029 2868 247 282 68 43 chr4 130314432 130314549 -72013798 - L2 LINE L2 0 3272 3153 555 161 53 72 chr4 130314617 130314769 -72013578 + MER34B LTR ERV1 5 144 -421 377 101 21 26 chr4 130315134 130315215 -72013132 - AluSc SINE Alu -8 291 238 4283 110 152 94 chr4 130315215 130316496 -72011851 + pTR5 LTR ERV1 760 2438 0 1604 142 0 29 chr4 130316499 130316745 -72011602 - AluSg SINE Alu -71 239 1 23 0 0 0 chr4 130317002 130317025 -72011322 + AT_rich Low_complexity Low_complexity 1 23 0 213 39 0 0 chr4 130317162 130317188 -72011159 + (TC)n Simple_repeat Simple_repeat 1 26 0 830 250 68 0 chr4 130317221 130317413 -72010934 - MER63A DNA MER1_type -5 205 1 357 203 0 16 chr4 130317438 130317502 -72010845 + L2 LINE L2 3221 3283 -30 5598 71 0 1 chr4 130317544 130318205 -72010142 - PABL_A LTR ERV1 0 660 1 1410 188 54 12 chr4 130318392 130318709 -72009638 - MER61B LTR ERV1 -2 423 1 258 32 0 0 chr4 130319179 130319210 -72009137 + (GGAA)n Simple_repeat Simple_repeat 1 31 0 659 277 118 22 chr4 130319231 130319596 -72008751 + L1ME LINE L1 5410 5809 -312 2565 54 0 0 chr4 130319821 130320118 -72008229 - AluY SINE Alu -14 297 1 239 313 48 12 chr4 130320519 130320602 -72007745 - MIR SINE MIR -157 105 20 229 172 17 35 chr4 130320779 130320837 -72007510 + (TCCA)n Simple_repeat Simple_repeat 2 58 0 953 249 52 9 chr4 130320860 130321089 -72007258 + MIR SINE MIR 2 240 -22 352 303 61 55 chr4 130321112 130321277 -72007070 - L2 LINE L2 -33 3239 3074 2286 92 20 0 chr4 130321472 130321766 -72006581 - AluSx SINE Alu -12 300 1 916 239 0 33 chr4 130323026 130323239 -72005108 + L1MC4 LINE L1 7406 7611 -431 610 251 147 6 chr4 130323239 130323402 -72004945 + MER5A DNA MER1_type 4 189 0 444 174 17 12 chr4 130323546 130323682 -72004665 - MER5A DNA MER1_type -2 187 4 500 266 26 61 chr4 130323687 130323857 -72004490 + L1MC4 LINE L1 7742 7916 -126 241 45 23 23 chr4 130323857 130323901 -72004446 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 4849 138 74 22 chr4 130323901 130324686 -72003661 + LTR1B LTR ERV1 1 826 0 500 266 26 61 chr4 130324686 130324743 -72003604 + L1MC4 LINE L1 7914 7962 -80 1002 255 49 97 chr4 130324809 130325378 -72002969 - MER34 LTR ERV1 0 542 1 211 211 0 0 chr4 130326729 130326767 -72001580 + (CA)n Simple_repeat Simple_repeat 1 38 0 226 304 141 22 chr4 130327073 130327165 -72001182 + MIR SINE MIR 49 151 -57 1189 152 26 11 chr4 130327247 130327438 -72000909 + MER20 DNA MER1_type 25 218 -1 2205 139 78 16 chr4 130327690 130328064 -72000283 - MSTB2 LTR MaLR 0 457 61 6298 213 37 51 chr4 130328064 130328126 -72000221 - MSTB2-int LTR MaLR -126 1525 1464 2287 151 15 103 chr4 130328126 130328602 -71999745 + Tigger2a DNA MER2_type 1 434 0 6298 213 37 51 chr4 130328602 130330086 -71998261 - MSTB2-int LTR MaLR -187 1464 1 2512 133 126 2 chr4 130330086 130330492 -71997855 - MSTB2 LTR MaLR 0 457 2 1815 158 14 99 chr4 130330507 130330620 -71997727 - MLT1B LTR MaLR -2 388 267 2803 145 21 19 chr4 130330620 130331047 -71997300 + MSTC LTR MaLR 1 428 0 1815 158 14 99 chr4 130331047 130331357 -71996990 - MLT1B LTR MaLR -123 267 1 570 285 117 0 chr4 130331588 130331767 -71996580 + MIR SINE MIR 54 253 -9 263 271 178 22 chr4 130332363 130332588 -71995759 + L2 LINE L2 2804 3063 -209 1955 176 57 50 chr4 130332608 130333067 -71995280 - L1ME2 LINE L1 -9 6089 5628 4978 246 72 66 chr4 130333079 130333888 -71994459 - L1ME2 LINE L1 -2051 4029 3226 1941 145 7 3 chr4 130333888 130334184 -71994163 - AluSx SINE Alu -10 302 6 4978 246 72 66 chr4 130334184 130334415 -71993932 - L1ME2 LINE L1 -2854 3226 2998 2013 114 10 7 chr4 130334415 130334705 -71993642 + AluSg SINE Alu 1 291 -19 4978 246 72 66 chr4 130334705 130335073 -71993274 - L1ME2 LINE L1 -3082 2998 2634 2909 133 36 2 chr4 130335073 130335485 -71992862 - MSTB LTR MaLR 0 426 1 4978 246 72 66 chr4 130335485 130336131 -71992216 - L1ME2 LINE L1 -3446 2634 1993 2379 90 3 0 chr4 130336131 130336432 -71991915 - AluSx SINE Alu -10 302 1 4978 246 72 66 chr4 130336432 130336764 -71991583 - L1ME2 LINE L1 -4087 1993 1664 314 176 0 0 chr4 130336764 130336815 -71991532 - 5S rRNA rRNA -70 51 1 4978 246 72 66 chr4 130336815 130337914 -71990433 - L1ME2 LINE L1 -4416 1664 525 735 338 76 21 chr4 130338120 130338543 -71989804 - L1ME2 LINE L1 -5618 452 7 827 164 8 0 chr4 130338557 130338679 -71989668 - FLAM_A SINE Alu -9 124 2 299 232 14 0 chr4 130339335 130339404 -71988943 - MLT1K LTR MaLR -8 580 511 472 298 60 32 chr4 130339443 130339790 -71988557 - MLT1K LTR MaLR -151 437 13 200 271 33 82 chr4 130340284 130340406 -71987941 - MIR SINE MIR -31 231 116 2900 108 149 2 chr4 130341416 130341853 -71986494 + MER61D LTR ERV1 1 501 0 34 65 0 0 chr4 130342094 130342156 -71986191 + AT_rich Low_complexity Low_complexity 1 62 0 673 271 34 21 chr4 130342448 130342684 -71985663 + LTR16A1 LTR ERVL 187 425 -32 1465 151 0 0 chr4 130342720 130342938 -71985409 + AluSg/x SINE Alu 88 305 -5 198 143 0 0 chr4 130342954 130342989 -71985358 + (CA)n Simple_repeat Simple_repeat 2 36 0 413 236 186 21 chr4 130343264 130343404 -71984943 - L1ME3A LINE L1 0 6170 6008 1394 263 90 17 chr4 130343910 130344555 -71983792 - L2 LINE L2 -4 3309 2624 1168 155 95 38 chr4 130344556 130344915 -71983432 + MSTA LTR MaLR 1 428 0 403 299 91 7 chr4 130344915 130345069 -71983278 - L2 LINE L2 -687 2627 2461 4154 83 0 4 chr4 130345424 130345941 -71982406 - L1PA8A LINE L1 0 6131 5617 1188 334 95 35 chr4 130345972 130347117 -71981230 - L2 LINE L2 -337 2977 1764 292 363 140 25 chr4 130347647 130348082 -71980265 - L2 LINE L2 -2498 816 332 28 48 0 0 chr4 130348258 130348300 -71980047 + AT_rich Low_complexity Low_complexity 1 42 0 202 206 0 0 chr4 130348472 130348506 -71979841 + polypyrimidine Low_complexity Low_complexity 3 36 0 314 215 38 38 chr4 130348685 130348764 -71979583 - MIR3 SINE MIR -30 178 100 217 244 0 0 chr4 130349888 130349933 -71978414 + GA-rich Low_complexity Low_complexity 4 48 0 666 244 138 60 chr4 130351086 130351439 -71976908 - L1ME4a LINE L1 0 6121 5716 2320 102 7 0 chr4 130351439 130351743 -71976604 - AluSx SINE Alu -6 306 1 666 244 138 60 chr4 130351743 130351890 -71976457 - L1ME4a LINE L1 -405 5716 5582 314 217 53 10 chr4 130351963 130352060 -71976287 - L1ME4a LINE L1 -672 5449 5347 417 364 25 15 chr4 130352141 130352339 -71976008 + MIR3 SINE MIR 2 201 -7 2217 103 3 0 chr4 130352516 130352808 -71975539 + AluSx SINE Alu 1 293 -19 2308 79 0 23 chr4 130353331 130353635 -71974712 + AluY SINE Alu 1 297 -14 633 188 0 83 chr4 130356376 130356520 -71971827 - FLAM_C SINE Alu 0 133 2 2563 65 0 3 chr4 130356615 130356922 -71971425 + AluSc SINE Alu 1 306 -3 1170 161 28 23 chr4 130356959 130357177 -71971170 - MER20 DNA MER1_type 0 219 1 249 33 0 0 chr4 130360296 130360326 -71968021 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 273 319 214 11 chr4 130360671 130360853 -71967494 + MIR SINE MIR 10 228 -34 1949 184 62 70 chr4 130361258 130361758 -71966589 + MLT1D LTR MaLR 1 496 -9 25 0 0 0 chr4 130362254 130362279 -71966068 + AT_rich Low_complexity Low_complexity 1 25 0 220 200 0 22 chr4 130362990 130363035 -71965312 + GA-rich Low_complexity Low_complexity 1 44 0 563 292 72 65 chr4 130365472 130365900 -71962447 - L1ME LINE L1 -358 5804 5374 251 259 121 35 chr4 130366801 130366917 -71961430 - MIR SINE MIR -37 225 100 222 308 30 30 chr4 130367990 130368123 -71960224 + CT-rich Low_complexity Low_complexity 5 137 0 2431 92 0 3 chr4 130368817 130369121 -71959226 + AluSp SINE Alu 1 303 -10 186 294 176 0 chr4 130369716 130369801 -71958546 - MIR3 SINE MIR -31 177 78 229 218 64 13 chr4 130369988 130370066 -71958281 + HsTC2 DNA Tc2 1 82 -1816 477 188 111 8 chr4 130370094 130370211 -71958136 - MIR SINE MIR -76 186 58 5551 66 1 4 chr4 130371950 130372666 -71955681 - L1PA7 LINE L1 -1 6153 5440 359 278 10 21 chr4 130372883 130372980 -71955367 + L2 LINE L2 3213 3308 -5 230 132 0 0 chr4 130374026 130374064 -71954283 - L2 LINE L2 0 3313 3276 432 355 7 0 chr4 130374235 130374373 -71953974 - MER91A DNA MER1_type -44 152 14 223 234 21 0 chr4 130374502 130374549 -71953798 + MIR3 SINE MIR 113 160 -48 814 231 91 37 chr4 130374590 130374833 -71953514 + MIR SINE MIR 6 261 -1 769 230 291 17 chr4 130375244 130375666 -71952681 - MLT1H LTR MaLR 0 549 12 1330 127 77 0 chr4 130375706 130375926 -71952421 - L1PA16 LINE L1 -9 6157 5921 2221 101 75 5 chr4 130375926 130376302 -71952045 + L1P4 LINE L1 5408 5809 -357 222 146 24 0 chr4 130377949 130377990 -71950357 + CT-rich Low_complexity Low_complexity 1 42 0 366 227 187 30 chr4 130378616 130378814 -71949533 - L2 LINE L2 0 3313 3085 * 5179 259 99 19 chr4 130378812 130380512 -71947835 - L2 LINE L2 -1008 2306 471 2008 151 3 0 chr4 130380624 130380923 -71947424 - AluSx SINE Alu -11 301 2 652 263 18 29 chr4 130380958 130381129 -71947218 + MER5B DNA MER1_type 7 175 -3 419 244 6 117 chr4 130382813 130382993 -71945354 + MER102b DNA MER1_type 171 330 -11 795 241 146 49 chr4 130383715 130384371 -71943976 + MLT2F LTR ERVL 6 628 0 610 113 9 38 chr4 130385391 130385497 -71942850 + LTR23 LTR ERV1 3 105 -332 634 216 10 67 chr4 130385501 130385695 -71942652 + L2 LINE L2 3113 3295 -18 390 307 109 10 chr4 130386115 130386325 -71942022 - MIR SINE MIR -19 243 12 32 0 0 0 chr4 130386497 130386529 -71941818 + AT_rich Low_complexity Low_complexity 1 32 0 1936 149 27 6 chr4 130386529 130386865 -71941482 + MER2 DNA MER2_type 1 343 -1 2518 64 0 3 chr4 130387126 130387438 -71940909 + AluY SINE Alu 1 311 0 334 172 0 58 chr4 130387631 130387718 -71940629 - MLT1F LTR MaLR -2 540 459 * 687 168 32 0 chr4 130387714 130387839 -71940508 - MLT1F LTR MaLR -272 270 142 488 284 27 27 chr4 130388045 130388228 -71940119 + MIR SINE MIR 1 183 -79 201 235 106 35 chr4 130388326 130388411 -71939936 + L2 LINE L2 3179 3269 -44 508 287 24 18 chr4 130388436 130388600 -71939747 + MIR SINE MIR 2 166 -96 311 314 88 0 chr4 130388658 130388760 -71939587 + MIR SINE MIR 150 260 -2 1998 147 3 0 chr4 130388795 130389094 -71939253 + AluSx SINE Alu 1 300 -12 875 183 42 0 chr4 130389192 130389383 -71938964 + MER3 DNA MER1_type 1 199 -10 460 290 27 27 chr4 130389835 130390018 -71938329 - MIR SINE MIR -79 183 1 180 213 0 133 chr4 130390358 130390433 -71937914 - MIR3 SINE MIR -13 195 131 231 36 0 0 chr4 130390716 130390744 -71937603 + (T)n Simple_repeat Simple_repeat 1 28 0 27559 22 0 0 chr4 130390749 130394941 -71933406 - L1HS LINE L1 0 6155 1964 404 229 199 8 chr4 130395040 130395171 -71933176 + MIR SINE MIR 34 189 -73 931 258 72 18 chr4 130395200 130395534 -71932813 - MLT1J2 LTR MaLR -41 409 58 200 283 17 0 chr4 130395559 130395619 -71932728 + MIR SINE MIR 195 255 -7 298 228 66 0 chr4 130395782 130395859 -71932488 + MIR SINE MIR 68 150 -58 2277 107 0 19 chr4 130396136 130396454 -71931893 + AluSx SINE Alu 1 312 0 217 368 0 53 chr4 130397506 130397601 -71930746 + MIR3 SINE MIR 67 156 -52 2197 74 11 0 chr4 130397718 130397989 -71930358 - AluY SINE Alu -12 299 26 258 269 30 0 chr4 130398064 130398131 -71930216 + L3 LINE CR1 1329 1397 -180 629 181 294 0 chr4 130398622 130398662 -71929685 - MER3 DNA MER1_type -2 207 180 183 100 0 0 chr4 130398662 130398692 -71929655 + (TTAAA)n Simple_repeat Simple_repeat 1 30 0 629 181 294 0 chr4 130398692 130398811 -71929536 - MER3 DNA MER1_type -29 180 1 222 310 26 17 chr4 130399137 130399253 -71929094 + CT-rich Low_complexity Low_complexity 2 118 0 617 262 35 12 chr4 130399349 130399521 -71928826 - LTR39 LTR ERV1 0 783 608 1266 162 20 86 chr4 130399640 130399942 -71928405 - LTR39 LTR ERV1 -501 282 1 396 218 20 70 chr4 130400158 130400289 -71928058 + MLT1J2 LTR MaLR 17 178 -322 367 201 145 35 chr4 130400359 130400501 -71927846 + MLT1J2 LTR MaLR 294 402 -7 467 297 8 8 chr4 130400521 130400649 -71927698 - MLT1K LTR MaLR -323 265 138 422 255 147 82 chr4 130401239 130401421 -71926926 - L2 LINE L2 -970 2344 2133 6750 82 2 2 chr4 130401421 130402663 -71925684 + L1PA10 LINE L1 4924 6168 0 422 255 147 82 chr4 130402663 130402786 -71925561 - L2 LINE L2 -1181 2133 2019 189 256 23 0 chr4 130403160 130403203 -71925144 - L2 LINE L2 -19 3294 3251 584 138 8 114 chr4 130404954 130405077 -71923270 + FLAM_C SINE Alu 1 110 -33 38 0 0 0 chr4 130405083 130405121 -71923226 + AT_rich Low_complexity Low_complexity 1 38 0 184 289 22 0 chr4 130405398 130405443 -71922904 - L2 LINE L2 -557 2757 2712 713 192 24 0 chr4 130405485 130405610 -71922737 + FLAM_C SINE Alu 1 128 -5 1972 129 156 13 chr4 130405798 130406170 -71922177 + MSTA LTR MaLR 2 426 -2 8997 133 24 40 chr4 130406174 130407766 -71920581 + MSTA-int LTR MaLR 3 1570 -10 4068 98 2 0 chr4 130407766 130408319 -71920028 - MER41A LTR ERV1 0 554 1 8997 133 24 40 chr4 130408319 130408330 -71920017 + MSTA-int LTR MaLR 1570 1580 0 1995 171 116 10 chr4 130408330 130408717 -71919630 + MSTA LTR MaLR 1 428 0 612 353 19 13 chr4 130408718 130409030 -71919317 - L1M2 LINE L1 -6407 442 129 1419 151 167 16 chr4 130409031 130409336 -71919011 + MSTA LTR MaLR 78 428 0 393 260 10 0 chr4 130409337 130409441 -71918906 + MIR SINE MIR 70 174 -88 1549 249 72 11 chr4 130410032 130410501 -71917846 - LTR26 LTR ERV1 -2 601 104 2060 98 27 33 chr4 130410615 130410745 -71917602 + L1MA2 LINE L1 5941 6070 -234 2111 118 0 7 chr4 130410745 130411055 -71917292 + AluSx SINE Alu 1 308 0 2060 98 27 33 chr4 130411055 130411261 -71917086 + L1MA2 LINE L1 6070 6278 -26 2229 107 3 0 chr4 130411261 130411559 -71916788 + AluSp SINE Alu 1 299 -14 2060 98 27 33 chr4 130411559 130411586 -71916761 + L1MA2 LINE L1 6278 6304 0 378 0 0 0 chr4 130411668 130411710 -71916637 + (TG)n Simple_repeat Simple_repeat 1 42 0 312 228 11 87 chr4 130411860 130411952 -71916395 + MER21B LTR ERV1 12 96 -767 3048 243 20 23 chr4 130411955 130412734 -71915613 + MER21B LTR ERV1 18 794 -69 1900 161 84 41 chr4 130412811 130413253 -71915094 - MER65C LTR ERV1 0 461 1 338 127 0 16 chr4 130413332 130413395 -71914952 + (GGGA)n Simple_repeat Simple_repeat 4 65 0 296 272 33 11 chr4 130414365 130414457 -71913890 + (TATATG)n Simple_repeat Simple_repeat 2 95 0 1289 253 81 45 chr4 130414797 130415327 -71913020 + MLT1H LTR MaLR 1 549 0 1800 193 59 46 chr4 130417175 130417636 -71910711 + MLT1C LTR MaLR 1 467 0 1901 168 0 57 chr4 130417656 130418043 -71910304 - MLT1A2 LTR MaLR 0 374 10 450 305 214 19 chr4 130418805 130419175 -71909172 - L2 LINE L2 -1 3312 2871 881 281 138 30 chr4 130420506 130420668 -71907679 + MLT1L LTR MaLR 103 246 -369 1570 143 186 50 chr4 130420668 130421045 -71907302 + MSTA LTR MaLR 1 428 0 881 281 138 30 chr4 130421045 130421345 -71907002 + MLT1L LTR MaLR 246 615 0 3553 134 3 22 chr4 130421369 130421996 -71906351 - MER67C LTR ERV1 -2 708 94 1776 97 97 31 chr4 130421996 130422316 -71906031 + L1MA2 LINE L1 5964 6304 0 394 172 17 69 chr4 130422333 130422449 -71905898 - MER67C LTR ERV1 -600 110 1 336 266 184 44 chr4 130422727 130422885 -71905462 + MER91A DNA MER1_type 1 180 -16 2033 167 28 26 chr4 130422974 130423253 -71905094 - MLT1B LTR MaLR 0 390 108 2268 110 7 0 chr4 130423253 130423554 -71904793 - AluSg SINE Alu -7 303 1 2033 167 28 26 chr4 130423554 130423663 -71904684 - MLT1B LTR MaLR -282 108 1 618 307 58 5 chr4 130423774 130423963 -71904384 + MIR SINE MIR 18 216 -46 674 171 107 44 chr4 130424069 130424133 -71904214 - LTR37A LTR ERV1 0 426 367 2193 97 7 0 chr4 130424133 130424422 -71903925 + AluSg SINE Alu 16 306 -4 674 171 107 44 chr4 130424422 130424562 -71903785 - LTR37A LTR ERV1 -59 367 209 303 267 70 0 chr4 130424766 130424852 -71903495 + MIR3 SINE MIR 117 208 0 2616 169 13 13 chr4 130425309 130425781 -71902566 + MER70A LTR ERVL 1 472 0 251 220 0 20 chr4 130426816 130426866 -71901481 - MIR SINE MIR -183 79 31 1188 163 30 15 chr4 130427198 130427401 -71900946 - AluJo SINE Alu -22 290 85 941 173 0 24 chr4 130428505 130428673 -71899674 + FRAM SINE Alu 1 163 -13 1581 199 7 7 chr4 130428917 130429260 -71899087 - AluJo SINE Alu 0 343 1 749 250 54 54 chr4 130429456 130429824 -71898523 + MER87 LTR ERV1 174 541 0 580 275 10 26 chr4 130429979 130430172 -71898175 + MLT1H LTR MaLR 39 228 -321 362 219 35 26 chr4 130430321 130430435 -71897912 + MLT1H LTR MaLR 431 545 -4 861 175 0 0 chr4 130430435 130430572 -71897775 + FLAM_C SINE Alu 1 137 -6 303 164 0 0 chr4 130431284 130431345 -71897002 + CT-rich Low_complexity Low_complexity 1 61 0 538 194 0 0 chr4 130431598 130431696 -71896651 + FLAM_A SINE Alu 34 131 -11 493 97 0 97 chr4 130432167 130432260 -71896087 - FLAM_A SINE Alu -4 138 55 27 0 0 0 chr4 130432477 130432504 -71895843 + AT_rich Low_complexity Low_complexity 1 27 0 312 91 0 0 chr4 130433061 130433105 -71895242 + (TTCC)n Simple_repeat Simple_repeat 3 46 0 1633 160 15 0 chr4 130433120 130433382 -71894965 - AluJb SINE Alu -1 311 46 752 130 12 37 chr4 130433775 130433937 -71894410 + L1MA7 LINE L1 6130 6287 -4 24 0 0 0 chr4 130433938 130433962 -71894385 + AT_rich Low_complexity Low_complexity 1 24 0 2160 131 0 3 chr4 130434765 130435071 -71893276 - AluSx SINE Alu -6 306 2 9965 154 54 15 chr4 130436715 130438459 -71889888 + Ricksha_c DNA DNA 122 1945 -1309 949 169 12 24 chr4 130438459 130438625 -71889722 + FAM SINE Alu 2 165 -10 9965 154 54 15 chr4 130438625 130438728 -71889619 + Ricksha_c DNA DNA 1945 2042 -4 451 244 9 9 chr4 130439010 130439125 -71889222 + L1ME3A LINE L1 5527 5641 -525 962 214 108 53 chr4 130439127 130439469 -71888878 + MLT1B LTR MaLR 1 361 -29 1028 83 0 15 chr4 130439614 130439747 -71888600 + AluSq/x SINE Alu 1 131 -181 205 211 0 0 chr4 130439747 130439785 -71888562 + (TA)n Simple_repeat Simple_repeat 1 38 0 334 337 61 18 chr4 130439808 130439971 -71888376 + L1ME3A LINE L1 5793 5962 -208 250 259 76 23 chr4 130441071 130441202 -71887145 + MER103 DNA DNA 2 139 -27 306 286 0 22 chr4 130441640 130441731 -71886616 + L1MC4 LINE L1 6615 6703 -1339 * 318 311 0 0 chr4 130441651 130441741 -71886606 - L1MC4 LINE L1 -1339 6703 6614 222 301 0 0 chr4 130441757 130441840 -71886507 + (TG)n Simple_repeat Simple_repeat 1 83 0 1783 171 20 3 chr4 130442629 130442933 -71885414 - AluJb SINE Alu -3 309 1 692 295 24 0 chr4 130443021 130443275 -71885072 + MIR SINE MIR 3 262 0 220 336 86 0 chr4 130443369 130443485 -71884862 + L2 LINE L2 2585 2710 -604 300 357 55 65 chr4 130443517 130443808 -71884539 + L1MEc LINE L1 -8 279 -6031 315 0 0 0 chr4 130443821 130443856 -71884491 + (AAATG)n Simple_repeat Simple_repeat 3 37 0 2376 75 3 3 chr4 130443906 130444211 -71884136 - AluY SINE Alu -6 305 1 2423 53 232 136 chr4 130444237 130444767 -71883580 + LTR12 LTR ERV1 1 581 -133 2088 120 0 0 chr4 130445279 130445570 -71882777 + AluSx SINE Alu 19 309 -3 466 262 57 63 chr4 130445611 130446030 -71882317 + L1MEc LINE L1 976 1257 -4862 240 0 162 0 chr4 130446030 130446067 -71882280 + MADE1 DNA Mariner 1 43 -37 609 266 51 40 chr4 130446083 130446358 -71881989 + L1MEc LINE L1 1426 1703 -4607 228 293 29 23 chr4 130446371 130446545 -71881802 + L1MEc LINE L1 1788 1962 -4348 1091 245 98 38 chr4 130446552 130447030 -71881317 - MLT1G1 LTR MaLR -11 584 9 2116 267 112 15 chr4 130447115 130448263 -71880084 - L1M4 LINE L1 -1084 5062 3803 470 283 85 13 chr4 130448315 130448542 -71879805 - L1M4 LINE L1 -2467 3679 3439 840 271 55 24 chr4 130449188 130449443 -71878904 - MLT1E LTR MaLR -6 587 325 28 0 0 0 chr4 130449670 130449698 -71878649 + AT_rich Low_complexity Low_complexity 1 28 0 5550 132 16 26 chr4 130450247 130450710 -71877637 + L1PB1 LINE L1 4531 4997 -1154 2329 98 0 7 chr4 130450710 130451015 -71877332 + AluSc SINE Alu 1 303 -6 5550 132 16 26 chr4 130451015 130452189 -71876158 + L1PB1 LINE L1 4997 6149 -2 2317 92 3 0 chr4 130452331 130452634 -71875713 - AluY SINE Alu -7 304 1 1772 149 43 3 chr4 130452648 130452949 -71875398 - AluSq SINE Alu 0 313 1 514 62 123 0 chr4 130453090 130453171 -71875176 + L1PB1 LINE L1 6059 6149 -2 383 281 130 51 chr4 130453284 130453312 -71875035 + L1MC/D LINE L1 5267 5291 -1272 2279 99 3 0 chr4 130453312 130453615 -71874732 - AluY SINE Alu -7 304 1 2102 91 40 13 chr4 130453617 130453915 -71874432 - AluSq SINE Alu -7 306 1 383 281 130 51 chr4 130453915 130454371 -71873976 + L1MC/D LINE L1 5291 5804 -759 247 333 31 0 chr4 130455589 130455685 -71872662 + MIR SINE MIR 53 151 -111 2137 118 0 0 chr4 130455737 130456024 -71872323 + AluY SINE Alu 1 287 -24 29 0 0 0 chr4 130456024 130456053 -71872294 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr4 130456845 130456880 -71871467 + AT_rich Low_complexity Low_complexity 1 35 0 265 211 221 0 chr4 130457279 130457374 -71870973 + L2 LINE L2 3193 3308 -5 208 267 58 47 chr4 130457846 130457932 -71870415 + MIR3 SINE MIR 11 97 -111 441 0 0 0 chr4 130459447 130459496 -71868851 + (CA)n Simple_repeat Simple_repeat 2 50 0 207 0 0 0 chr4 130459930 130459953 -71868394 + (T)n Simple_repeat Simple_repeat 1 23 0 2300 75 0 3 chr4 130460342 130460636 -71867711 - AluY SINE Alu -18 293 1 184 227 68 68 chr4 130461206 130461294 -71867053 - L2 LINE L2 -181 3091 3004 1087 279 110 28 chr4 130461746 130462344 -71866003 - L2 LINE L2 0 3313 2677 219 206 382 0 chr4 130462372 130462440 -71865907 - L2 LINE L2 -568 2746 2653 540 286 90 17 chr4 130463399 130463633 -71864714 + MIR SINE MIR 2 252 -10 564 172 66 0 chr4 130463675 130463797 -71864550 + L1M4 LINE L1 4898 5027 -1119 * 2570 186 41 59 chr4 130463788 130464286 -71864061 + L1M4 LINE L1 4677 5145 -1019 2124 92 27 7 chr4 130464286 130464580 -71863767 - AluY SINE Alu -11 300 1 2570 186 41 59 chr4 130464580 130464926 -71863421 + L1M4 LINE L1 5145 5496 -668 1260 220 156 12 chr4 130464947 130465351 -71862996 + MLT1C LTR MaLR 6 467 0 443 156 133 0 chr4 130465351 130465441 -71862906 + L1M4 LINE L1 5502 5603 -575 2004 138 20 7 chr4 130466060 130466358 -71861989 + AluJb SINE Alu 1 302 -10 448 348 25 39 chr4 130466525 130466729 -71861618 + L2 LINE L2 3072 3272 0 679 279 112 5 chr4 130466897 130467094 -71861253 - MIR SINE MIR -33 229 12 201 344 44 44 chr4 130467081 130467249 -71861098 + L2 LINE L2 2698 2868 -446 * 2370 91 0 0 chr4 130467249 130467556 -71860791 - AluSg SINE Alu -3 307 1 201 344 44 44 chr4 130467556 130467567 -71860780 + L2 LINE L2 2867 2877 -437 1423 216 73 18 chr4 130470238 130470674 -71857673 - LTR40c LTR ERVL -5 460 1 2464 213 36 32 chr4 130470712 130471375 -71856972 - HERVL40 LTR ERVL -40 5490 4825 701 258 46 46 chr4 130471378 130471638 -71856709 - HERVL40 LTR ERVL -3135 2395 2136 2000 140 73 44 chr4 130471638 130471707 -71856640 - Tigger2a DNA MER2_type -2274 434 368 1923 130 17 3 chr4 130471707 130472000 -71856347 - AluSx SINE Alu -15 297 1 2000 140 73 44 chr4 130472000 130472338 -71856009 - Tigger2a DNA MER2_type -2340 368 15 1926 143 19 0 chr4 130472338 130472660 -71855687 + MER7A DNA MER2_type 15 340 -6 478 195 188 13 chr4 130472666 130472815 -71855532 - HERVL40 LTR ERVL -4413 1117 943 1689 169 8 68 chr4 130473083 130473468 -71854879 - MER93b LTR ERV1 -11 362 1 1369 201 97 35 chr4 130473516 130473543 -71854804 - LTR40c LTR ERVL -6 459 435 1196 178 64 123 chr4 130473543 130473964 -71854383 + MSTD LTR MaLR 1 396 0 1369 201 97 35 chr4 130473964 130474368 -71853979 - LTR40c LTR ERVL -30 435 1 652 264 107 45 chr4 130474474 130474538 -71853809 - MIR SINE MIR 0 262 203 1885 145 62 52 chr4 130474538 130474924 -71853423 - MLT1B LTR MaLR 0 390 1 652 264 107 45 chr4 130474924 130475101 -71853246 - MIR SINE MIR -59 203 6 6449 136 24 30 chr4 130476931 130477553 -71850794 + L1M1 LINE L1 4080 4705 -1599 183 42 0 0 chr4 130477553 130477577 -71850770 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6449 136 24 30 chr4 130477577 130478655 -71849692 + L1M1 LINE L1 4705 5773 -531 373 114 0 56 chr4 130478655 130478732 -71849615 + AluS SINE Alu 1 64 -239 1189 124 53 10 chr4 130478734 130478943 -71849404 - L1MA1 LINE L1 -252 6050 5833 2087 33 0 0 chr4 130478943 130479183 -71849164 + AluY SINE Alu 70 309 -2 3221 94 47 12 chr4 130479183 130479696 -71848651 + L1MA1 LINE L1 5772 6302 0 827 193 41 0 chr4 130479726 130479897 -71848450 - MSTD LTR MaLR 0 396 219 486 62 0 86 chr4 130479943 130480024 -71848323 - MSTD LTR MaLR -321 75 2 1690 106 0 109 chr4 130481100 130481421 -71846926 - MER4A LTR ERV1 0 664 379 21 0 0 0 chr4 130481462 130481483 -71846864 + AT_rich Low_complexity Low_complexity 1 21 0 620 299 58 19 chr4 130482203 130482617 -71845730 - L1ME4a LINE L1 -109 6012 5583 511 233 17 8 chr4 130482644 130482764 -71845583 - FRAM SINE Alu -5 171 51 354 238 226 30 chr4 130483097 130483265 -71845082 - L1ME4a LINE L1 -525 5596 5396 2546 62 0 3 chr4 130483308 130483616 -71844731 + AluSc SINE Alu 1 307 -2 322 332 54 50 chr4 130483641 130483882 -71844465 - L1ME4a LINE L1 -1036 5110 4869 386 298 51 19 chr4 130484380 130484538 -71843809 + MIR3 SINE MIR 38 200 -8 361 219 21 0 chr4 130484663 130484759 -71843588 + L1MB3 LINE L1 6077 6174 -9 27 87 0 0 chr4 130484778 130484847 -71843500 + AT_rich Low_complexity Low_complexity 1 69 0 1919 149 17 0 chr4 130484868 130485157 -71843190 + AluJb SINE Alu 5 298 -14 216 0 0 0 chr4 130485661 130485685 -71842662 + (TC)n Simple_repeat Simple_repeat 1 24 0 285 317 0 10 chr4 130486229 130486330 -71842017 + L1ME LINE L1 5464 5563 -558 1014 32 0 0 chr4 130486529 130486653 -71841694 + L1PA4 LINE L1 6029 6152 -3 2249 87 0 3 chr4 130487014 130487302 -71841045 - AluSq SINE Alu -26 287 1 1548 145 14 14 chr4 130487391 130487687 -71840660 + L1MC3 LINE L1 7408 7703 -82 1529 188 86 48 chr4 130487687 130488060 -71840287 + MSTD LTR MaLR 1 387 -9 417 138 0 35 chr4 130488070 130488157 -71840190 + L1MC3 LINE L1 7701 7784 -1 354 296 58 35 chr4 130489151 130489323 -71839024 + MER5B DNA MER1_type 2 177 -1 332 123 31 0 chr4 130489407 130489472 -71838875 + L1ME3A LINE L1 5842 5908 -262 * 455 183 0 67 chr4 130489471 130489591 -71838756 + L1MB7 LINE L1 6010 6121 -63 551 72 12 0 chr4 130489611 130489694 -71838653 - AluSx SINE Alu -6 306 223 1668 119 0 0 chr4 130489737 130489955 -71838392 - AluSx SINE Alu -94 218 1 22 70 0 0 chr4 130489978 130490021 -71838326 + AT_rich Low_complexity Low_complexity 1 43 0 659 253 16 57 chr4 130490028 130490273 -71838074 + L1ME3A LINE L1 5894 6128 -42 293 356 20 0 chr4 130490405 130490506 -71837841 + L3b LINE CR1 1364 1466 -117 405 224 0 0 chr4 130491616 130491692 -71836655 - MIR3 SINE MIR -25 183 108 252 167 0 0 chr4 130491781 130491829 -71836518 + (TG)n Simple_repeat Simple_repeat 1 48 0 1834 136 0 57 chr4 130491852 130492168 -71836179 - AluSx SINE Alu -14 298 1 25 31 0 0 chr4 130492175 130492207 -71836140 + AT_rich Low_complexity Low_complexity 1 32 0 274 169 28 84 chr4 130492518 130492589 -71835758 - MIR SINE MIR -84 178 112 243 287 23 0 chr4 130492842 130492929 -71835418 + Charlie7 DNA MER1_type 9 97 -2515 2105 185 93 33 chr4 130493046 130493585 -71834762 + MER77 LTR ERV1 53 599 -6 203 0 0 36 chr4 130493766 130493794 -71834553 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 2162 120 0 7 chr4 130493798 130494090 -71834257 - AluSx SINE Alu -22 290 1 1440 176 25 77 chr4 130494109 130494462 -71833885 - MLT1A1 LTR MaLR -30 335 1 712 205 0 0 chr4 130495365 130495492 -71832855 - FLAM_A SINE Alu -6 127 1 2396 90 0 0 chr4 130495691 130495991 -71832356 + AluY SINE Alu 1 300 -11 234 0 0 0 chr4 130496215 130496241 -71832106 + (A)n Simple_repeat Simple_repeat 1 26 0 2240 124 0 0 chr4 130497194 130497501 -71830846 + AluSg SINE Alu 1 307 -3 2364 224 21 23 chr4 130497755 130498318 -71830029 - REP3 LTR ERV 0 562 1 581 243 39 44 chr4 130498520 130498934 -71829413 - MLT1H LTR MaLR -1 548 55 303 261 0 0 chr4 130499974 130500039 -71828308 - MLT1H LTR MaLR -318 231 167 425 285 52 6 chr4 130500620 130500792 -71827555 + L1MC4a LINE L1 5666 5845 -1963 1077 221 81 30 chr4 130501004 130501375 -71826972 - MER39 LTR ERV1 0 707 318 230 200 20 0 chr4 130501453 130501503 -71826844 - MER34 LTR ERV1 -490 52 2 27 29 0 0 chr4 130501778 130501812 -71826535 + AT_rich Low_complexity Low_complexity 1 34 0 463 183 59 59 chr4 130501848 130502034 -71826313 + L1MC4 LINE L1 7004 7189 -853 2244 108 3 25 chr4 130502396 130502710 -71825637 + AluSx SINE Alu 2 308 -4 30 27 0 0 chr4 130503067 130503104 -71825243 + AT_rich Low_complexity Low_complexity 1 37 0 404 280 144 17 chr4 130503365 130503601 -71824746 - LTR33 LTR ERVL -9 512 247 326 248 0 35 chr4 130503676 130503789 -71824558 - LTR33 LTR ERVL -401 120 12 21 36 0 0 chr4 130503907 130503935 -71824412 + AT_rich Low_complexity Low_complexity 1 28 0 1357 134 62 13 chr4 130503979 130504301 -71824046 - MSTC LTR MaLR -61 367 1 197 62 0 31 chr4 130504735 130504756 -71823591 + (CA)n Simple_repeat Simple_repeat 2 23 -9 4103 160 64 36 chr4 130504756 130505632 -71822715 + MER54A LTR ERVL 2 901 0 197 62 0 31 chr4 130505632 130505642 -71822705 + (CA)n Simple_repeat Simple_repeat 23 32 0 1942 129 0 0 chr4 130506461 130506767 -71821580 - AluSx SINE Alu 0 326 21 14507 133 63 14 chr4 130507227 130507952 -71820395 - Tigger1 DNA MER2_type 0 2418 1730 2423 82 0 0 chr4 130507952 130508256 -71820091 - AluSg SINE Alu -6 304 1 14507 133 63 14 chr4 130508256 130508528 -71819819 - Tigger1 DNA MER2_type -688 1730 1473 2535 62 3 0 chr4 130508528 130508833 -71819514 - AluY SINE Alu -5 306 1 14507 133 63 14 chr4 130508833 130510138 -71818209 - Tigger1 DNA MER2_type -945 1473 1 2345 89 0 0 chr4 130511785 130512071 -71816276 + AluSp SINE Alu 1 287 -22 426 53 0 0 chr4 130512071 130512128 -71816219 + (CATA)n Simple_repeat Simple_repeat 2 58 0 1245 94 0 0 chr4 130512132 130512291 -71816056 + AluSg/x SINE Alu 134 292 -20 2285 162 58 0 chr4 130513350 130513727 -71814620 + MER57A LTR ERV1 1 399 -4 4729 189 17 12 chr4 130513775 130513893 -71814454 + L1P5 LINE L1 4261 4377 -1774 2141 112 6 10 chr4 130513893 130514207 -71814140 + AluSq SINE Alu 1 313 0 4729 189 17 12 chr4 130514207 130514231 -71814116 + L1P5 LINE L1 4377 4399 -1752 180 0 0 0 chr4 130514231 130514251 -71814096 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4729 189 17 12 chr4 130514251 130515344 -71813003 + L1P5 LINE L1 4399 5503 -648 1885 181 75 73 chr4 130515345 130515892 -71812455 + LTR10A LTR ERV1 1 548 -61 5027 83 3 11 chr4 130515905 130516396 -71811951 + L1PB1 LINE L1 5502 5988 -163 2588 111 53 3 chr4 130516396 130516755 -71811592 - MER51B LTR ERV1 0 377 1 5027 83 3 11 chr4 130516755 130516916 -71811431 + L1PB1 LINE L1 5988 6149 -2 3621 200 37 50 chr4 130516956 130517625 -71810722 + MER57A-int LTR ERV1 13 670 -6867 1934 137 7 3 chr4 130517625 130517917 -71810430 + AluSc SINE Alu 1 293 -16 3621 200 37 50 chr4 130517917 130518088 -71810259 + MER57A-int LTR ERV1 670 842 -6695 872 204 82 35 chr4 130518150 130518405 -71809942 + MER34C LTR ERV1 173 439 -146 270 273 0 0 chr4 130518412 130518478 -71809869 + MER57A-int LTR ERV1 1229 1294 -3829 608 127 0 0 chr4 130518580 130518659 -71809688 + AluS SINE Alu 2 80 -232 203 191 24 0 chr4 130518686 130518728 -71809619 + (TATG)n Simple_repeat Simple_repeat 2 44 0 288 167 0 69 chr4 130518735 130518807 -71809540 + MER57A-int LTR ERV1 1504 1570 -216 6079 117 17 14 chr4 130518836 130519765 -71808582 + Tigger1 DNA MER2_type 1307 2238 -180 834 202 15 50 chr4 130519774 130519827 -71808520 + MER57-int LTR ERV1 3151 3204 -3127 2503 81 0 3 chr4 130519827 130520136 -71808211 - AluSp SINE Alu -5 308 1 834 202 15 50 chr4 130520136 130520280 -71808067 + MER57-int LTR ERV1 3204 3341 -2990 537 211 18 0 chr4 130520336 130520445 -71807902 + MER57-int LTR ERV1 3354 3464 -2867 373 151 4 15 chr4 130520533 130520632 -71807715 + MER57-int LTR ERV1 1833 2889 -3195 6988 205 36 48 chr4 130520704 130520894 -71807453 + MER57-int LTR ERV1 1928 2119 -5418 2271 112 7 0 chr4 130520894 130521198 -71807149 + AluSq SINE Alu 1 306 -7 6988 205 36 48 chr4 130521198 130523000 -71805347 + MER57-int LTR ERV1 2119 5817 -1720 6780 187 25 17 chr4 130523143 130524519 -71803828 + MER57-int LTR ERV1 4734 7031 -506 2483 35 0 3 chr4 130524564 130524880 -71803467 + AluY SINE Alu 1 315 0 2176 189 0 30 chr4 130524880 130525287 -71803060 + MER57A LTR ERV1 9 403 0 771 162 11 128 chr4 130525520 130525699 -71802648 - FRAM SINE Alu -6 160 3 1646 217 75 45 chr4 130525874 130526316 -71802031 - LTR16A1 LTR ERVL 0 457 3 200 130 22 0 chr4 130526570 130526616 -71801731 + CT-rich Low_complexity Low_complexity 2 48 0 554 188 154 0 chr4 130528004 130528121 -71800226 - MIR SINE MIR -10 252 118 567 299 54 22 chr4 130528121 130528345 -71800002 - MIR SINE MIR -10 252 22 1815 177 0 13 chr4 130528529 130528839 -71799508 + AluJo SINE Alu 1 306 -6 701 171 132 0 chr4 130528879 130529008 -71799339 - MER45A DNA AcHobo -32 146 1 249 128 0 0 chr4 130529138 130529185 -71799162 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 747 276 90 21 chr4 130529458 130529737 -71798610 + L1MD3 LINE L1 6448 6745 -1250 2266 105 3 0 chr4 130529743 130530049 -71798298 - AluSg SINE Alu -3 307 1 714 130 98 24 chr4 130530169 130530292 -71798055 - AluY SINE Alu -178 133 2 1282 235 99 56 chr4 130530826 130531262 -71797085 - L2 LINE L2 -1487 1827 1360 2205 114 0 7 chr4 130531262 130531569 -71796778 + AluSg SINE Alu 1 305 -5 1282 235 99 56 chr4 130531569 130531690 -71796657 - L2 LINE L2 -1954 1360 1246 2374 89 0 3 chr4 130532495 130532798 -71795549 + AluSg SINE Alu 1 302 -8 286 325 42 45 chr4 130533112 130533377 -71794970 + L1ME LINE L1 5348 5611 -510 1955 128 41 0 chr4 130533521 130533811 -71794536 + AluSx SINE Alu 1 302 -10 251 291 36 0 chr4 130533864 130533974 -71794373 + L1ME LINE L1 5724 5837 -284 2141 102 35 0 chr4 130534886 130535170 -71793177 + AluSg SINE Alu 1 294 -16 5919 104 24 62 chr4 130535902 130537751 -71790596 + SVA Other Other 1 932 -454 5629 27 3 2 chr4 130537878 130538498 -71789849 + SVA Other Other 758 1378 -8 2195 125 3 0 chr4 130538668 130538979 -71789368 - AluSx SINE Alu 0 312 1 637 337 167 8 chr4 130539080 130539481 -71788866 - L3 LINE CR1 -433 1144 680 451 357 67 11 chr4 130539502 130539877 -71788470 + L1MC4a LINE L1 5530 5925 -1883 1656 159 3 32 chr4 130540233 130540547 -71787800 + AluJb SINE Alu 6 310 -2 23 54 0 0 chr4 130541009 130541046 -71787301 + AT_rich Low_complexity Low_complexity 1 37 0 2280 100 3 28 chr4 130541608 130541927 -71786420 + AluSx SINE Alu 1 311 -1 575 261 112 112 chr4 130542045 130542663 -71785684 - L1MC4a LINE L1 -1876 5932 5315 2182 109 0 0 chr4 130543242 130543550 -71784797 + AluSx SINE Alu 1 308 0 17268 100 39 27 chr4 130543735 130544491 -71783856 - Charlie3 DNA MER1_type 0 2706 1961 2134 123 3 0 chr4 130544491 130544791 -71783556 - AluSx SINE Alu -11 301 1 17268 100 39 27 chr4 130544791 130545792 -71782555 - Charlie3 DNA MER1_type -745 1961 974 1999 111 0 0 chr4 130545792 130546063 -71782284 - AluSx SINE Alu 0 312 42 17268 100 39 27 chr4 130546063 130546778 -71781569 - Charlie3 DNA MER1_type -1732 974 160 1934 141 28 0 chr4 130546778 130547062 -71781285 - AluSx SINE Alu -20 292 1 17268 100 39 27 chr4 130547062 130547155 -71781192 - Charlie3 DNA MER1_type -2546 160 70 304 231 138 75 chr4 130547726 130547886 -71780461 - L2 LINE L2 -19 3294 3125 621 295 56 49 chr4 130547990 130548314 -71780033 - L1ME4a LINE L1 -194 5927 5598 1814 157 3 10 chr4 130548314 130548620 -71779727 + AluJb SINE Alu 1 304 -8 621 295 56 49 chr4 130548620 130548743 -71779604 - L1ME4a LINE L1 -523 5598 5477 5037 145 16 15 chr4 130548807 130549675 -71778672 - L1MB7 LINE L1 -16 6168 5300 1268 218 65 57 chr4 130549954 130550444 -71777903 + MER39 LTR ERV1 1 585 0 2347 88 0 13 chr4 130550490 130550807 -71777540 + AluSp SINE Alu 1 313 0 400 275 110 118 chr4 130551929 130552565 -71775782 - L1M2 LINE L1 -5879 970 340 25 31 0 0 chr4 130552890 130552922 -71775425 + GC_rich Low_complexity Low_complexity 1 32 0 255 224 103 17 chr4 130553299 130553415 -71774932 + MIR SINE MIR 67 192 -70 435 178 133 0 chr4 130553501 130553591 -71774756 - MER5A DNA MER1_type -87 102 1 1234 180 33 5 chr4 130554551 130554762 -71773585 + MER20 DNA MER1_type 3 219 0 1069 149 11 6 chr4 130554852 130555026 -71773321 - L1PB1 LINE L1 -1 6150 5976 216 0 0 0 chr4 130556110 130556134 -71772213 + (A)n Simple_repeat Simple_repeat 1 24 0 318 303 34 8 chr4 130556338 130556457 -71771890 - MIR3 SINE MIR -1 207 86 1904 145 42 0 chr4 130557549 130557838 -71770509 - AluSx SINE Alu -11 301 1 348 24 0 0 chr4 130558471 130558512 -71769835 + (TG)n Simple_repeat Simple_repeat 2 42 0 1233 176 36 13 chr4 130559309 130559595 -71768752 - MER61B LTR ERV1 -36 389 4 3108 163 82 18 chr4 130559917 130560600 -71767747 + LTR8A LTR ERV1 1 727 0 183 371 46 33 chr4 130560802 130560953 -71767394 + L2 LINE L2 2331 2483 -831 269 320 113 94 chr4 130561289 130561545 -71766802 + L2 LINE L2 3004 3264 -8 21 0 0 0 chr4 130561840 130561861 -71766486 + AT_rich Low_complexity Low_complexity 1 21 0 265 269 43 21 chr4 130563694 130563787 -71764560 - MIR SINE MIR -44 218 124 598 151 48 8 chr4 130564141 130564168 -71764179 - MER7A DNA MER2_type -2862 176 152 1810 149 117 0 chr4 130564168 130564477 -71763870 + MER7A DNA MER2_type 1 343 -3 598 151 48 8 chr4 130564477 130564575 -71763772 - MER7A DNA MER2_type -2886 152 48 180 0 0 0 chr4 130564675 130564695 -71763652 + (CAA)n Simple_repeat Simple_repeat 2 21 0 265 269 43 21 chr4 130565617 130565710 -71762637 - MIR SINE MIR -44 218 124 598 151 48 8 chr4 130566064 130566091 -71762256 - MER7A DNA MER2_type -2862 176 152 1810 149 117 0 chr4 130566091 130566400 -71761947 + MER7A DNA MER2_type 1 343 -3 598 151 48 8 chr4 130566400 130566498 -71761849 - MER7A DNA MER2_type -2886 152 48 180 0 0 0 chr4 130566598 130566618 -71761729 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1921 168 15 45 chr4 130567024 130567423 -71760924 - MLT1B LTR MaLR 0 390 4 532 155 211 21 chr4 130568420 130568562 -71759785 + MER58B DNA MER1_type 173 341 0 23 54 0 0 chr4 130570170 130570207 -71758140 + AT_rich Low_complexity Low_complexity 1 37 0 647 325 107 18 chr4 130570367 130570814 -71757533 - L2 LINE L2 -172 3100 2597 15182 125 14 10 chr4 130570860 130571741 -71756606 - Tigger1 DNA MER2_type -2 2416 1540 898 102 27 0 chr4 130571741 130571888 -71756459 + CT-rich Low_complexity Low_complexity 2 152 0 1620 211 0 0 chr4 130571890 130572170 -71756177 - AluJo SINE Alu -32 280 1 15182 125 14 10 chr4 130572170 130573692 -71754655 - Tigger1 DNA MER2_type -878 1540 1 1954 171 47 20 chr4 130574790 130574837 -71753510 - MLT2D LTR ERVL 0 414 370 524 55 0 14 chr4 130574837 130574910 -71753437 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 1954 171 47 20 chr4 130574910 130575265 -71753082 - MLT2D LTR ERVL -44 370 1 3403 41 2 0 chr4 130576429 130576845 -71751502 + L1PA7 LINE L1 5736 6152 -2 189 322 58 41 chr4 130577029 130577150 -71751197 - L2 LINE L2 -2009 1305 1183 2199 141 0 0 chr4 130577213 130577517 -71750830 + AluSx SINE Alu 1 304 -8 230 316 21 0 chr4 130577799 130577894 -71750453 + GA-rich Low_complexity Low_complexity 1 97 0 308 331 102 6 chr4 130578405 130578562 -71749785 + MIR3 SINE MIR 3 174 -34 523 276 54 32 chr4 130579057 130579278 -71749069 + MIR SINE MIR 37 262 0 451 288 200 38 chr4 130579317 130579637 -71748710 - MLT1H1 LTR MaLR 0 555 224 2000 156 0 10 chr4 130580250 130580564 -71747783 + AluJb SINE Alu 1 311 -1 218 333 18 0 chr4 130580970 130581027 -71747320 + L2 LINE L2 3215 3272 0 380 307 16 8 chr4 130583487 130583614 -71744733 + L2 LINE L2 3186 3313 0 21 0 0 0 chr4 130583790 130583811 -71744536 + AT_rich Low_complexity Low_complexity 1 21 0 1444 144 62 28 chr4 130583847 130584138 -71744209 - L1MD1 LINE L1 0 6242 5942 24 32 0 0 chr4 130585082 130585113 -71743234 + AT_rich Low_complexity Low_complexity 1 31 0 2072 134 3 10 chr4 130585615 130585929 -71742418 - AluSx SINE Alu 0 312 1 485 219 35 26 chr4 130586437 130586551 -71741796 + L2 LINE L2 3199 3313 0 23 33 0 0 chr4 130586611 130586641 -71741706 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr4 130586885 130586906 -71741441 + (CA)n Simple_repeat Simple_repeat 2 22 0 191 300 136 43 chr4 130587124 130587264 -71741083 + L2 LINE L2 1918 2070 -1244 311 312 32 32 chr4 130587266 130587420 -71740927 - L1 LINE L1 -1551 4595 4442 1231 160 19 30 chr4 130587571 130587678 -71740669 - L1MD3 LINE L1 -1 7994 7887 1931 159 3 7 chr4 130587678 130587986 -71740361 - AluJb SINE Alu -5 307 1 1231 160 19 30 chr4 130587986 130588147 -71740200 - L1MD3 LINE L1 -108 7887 7729 254 329 68 92 chr4 130588255 130588714 -71739633 + L2 LINE L2 2043 2490 -824 208 245 20 0 chr4 130588714 130588763 -71739584 + CT-rich Low_complexity Low_complexity 2 51 0 465 327 87 81 chr4 130588959 130589418 -71738929 + L2 LINE L2 2811 3272 0 254 348 22 0 chr4 130589489 130589581 -71738766 + MIR3 SINE MIR 108 201 -7 285 300 9 9 chr4 130589581 130589691 -71738656 + MARNA DNA Mariner 354 463 -123 233 384 13 44 chr4 130589823 130589982 -71738365 + L3 LINE CR1 1423 1576 -1 22 35 0 0 chr4 130590244 130590273 -71738074 + AT_rich Low_complexity Low_complexity 1 29 0 342 222 74 30 chr4 130590531 130590666 -71737681 - L1MC5 LINE L1 -433 7528 7388 184 304 30 95 chr4 130590685 130590853 -71737494 + L2 LINE L2 2904 3060 -212 766 248 61 49 chr4 130590964 130591371 -71736976 - MLT2C2 LTR ERVL -52 412 1 427 281 47 16 chr4 130591542 130591670 -71736677 - L2 LINE L2 -5 3267 3136 335 308 19 25 chr4 130591716 130591875 -71736472 - L1MC5 LINE L1 -322 7639 7482 1140 204 181 2 chr4 130592323 130592489 -71735858 - L1MEc LINE L1 -3034 3907 3772 1710 174 26 3 chr4 130592489 130592815 -71735532 - AluSx SINE Alu 0 312 1 1140 204 181 2 chr4 130592815 130593046 -71735301 - L1MEc LINE L1 -3169 3772 3439 3822 167 77 25 chr4 130593055 130593318 -71735029 + L1MB8 LINE L1 4930 5178 -1000 2603 33 3 0 chr4 130593318 130593621 -71734726 + AluY SINE Alu 1 304 -7 3822 167 77 25 chr4 130593621 130594544 -71733803 + L1MB8 LINE L1 5178 6171 -7 843 144 15 0 chr4 130594743 130594875 -71733472 - AluJb SINE Alu -178 134 1 676 251 146 6 chr4 130595029 130595371 -71732976 - L1MEc LINE L1 -3647 3294 2905 6471 69 13 0 chr4 130595380 130596397 -71731950 - L1PA8A LINE L1 0 6131 5102 14453 116 10 0 chr4 130596397 130598703 -71729644 - L1PA8A LINE L1 -1324 4822 2494 5108 197 7 43 chr4 130598714 130600250 -71728097 + L1P3 LINE L1 951 2447 -4014 338 237 52 31 chr4 130600250 130600347 -71728000 - L1MEc LINE L1 -4178 2944 2846 332 316 71 55 chr4 130600566 130600819 -71727528 - L1MEc LINE L1 -5956 467 211 29 47 0 0 chr4 130601845 130601888 -71726459 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 130602070 130602092 -71726255 + AT_rich Low_complexity Low_complexity 1 22 0 227 200 108 0 chr4 130602244 130602309 -71726038 - MER103 DNA DNA -85 81 10 2290 77 3 0 chr4 130602755 130603040 -71725307 + AluY SINE Alu 1 286 -25 393 328 109 5 chr4 130603738 130603930 -71724417 - MIR SINE MIR -50 212 1 654 313 107 0 chr4 130604058 130604291 -71724056 + MIR SINE MIR 2 259 -3 2183 121 0 10 chr4 130604333 130604640 -71723707 - AluSx SINE Alu -8 304 1 277 361 85 0 chr4 130605247 130605377 -71722970 - L2 LINE L2 -16 3256 3116 1017 305 131 22 chr4 130605691 130606340 -71722007 - L2 LINE L2 -430 2884 2165 21 57 0 0 chr4 130606872 130606907 -71721440 + AT_rich Low_complexity Low_complexity 1 35 0 955 267 93 141 chr4 130607035 130607637 -71720710 + L2 LINE L2 1616 2245 -1027 510 172 339 0 chr4 130607637 130607823 -71720524 - MER5C DNA MER1_type -1 323 75 955 267 93 141 chr4 130607823 130608545 -71719802 + L2 LINE L2 2245 3051 -221 2202 104 56 37 chr4 130608737 130609092 -71719255 + THE1B LTR MaLR 3 364 0 11714 89 6 9 chr4 130609092 130610366 -71717981 + THE1B-int LTR MaLR 1 1272 -308 2378 83 0 7 chr4 130610366 130610668 -71717679 + AluY SINE Alu 1 300 -11 11714 89 6 9 chr4 130610668 130610977 -71717370 + THE1B-int LTR MaLR 1272 1580 0 2237 106 63 17 chr4 130610977 130611325 -71717022 + THE1B LTR MaLR 1 364 0 407 73 0 0 chr4 130611561 130611616 -71716731 + Alu SINE Alu 242 296 -16 1089 147 0 25 chr4 130611655 130611818 -71716529 - AluJo SINE Alu -151 161 3 4526 139 116 108 chr4 130613950 130614088 -71714259 + L1MC3 LINE L1 6443 6578 -1207 2212 97 0 0 chr4 130614088 130614392 -71713955 - AluSg SINE Alu 0 304 1 4526 139 116 108 chr4 130614392 130614924 -71713423 + L1MC3 LINE L1 6578 7104 -681 269 226 19 75 chr4 130614924 130615030 -71713317 + MLT1F1 LTR MaLR 35 134 -433 4526 139 116 108 chr4 130615030 130615206 -71713141 + L1MC3 LINE L1 7104 7277 -508 2049 160 3 6 chr4 130615206 130615519 -71712828 + AluJo SINE Alu 1 312 0 4526 139 116 108 chr4 130615519 130615890 -71712457 + L1MC3 LINE L1 7277 7779 -6 379 268 134 9 chr4 130616054 130616166 -71712181 + L2 LINE L2 3187 3312 -1 567 317 7 0 chr4 130616389 130616531 -71711816 + MIR3 SINE MIR 37 179 -29 2221 122 0 3 chr4 130616912 130617215 -71711132 - AluSx SINE Alu -10 302 1 436 268 164 27 chr4 130620802 130621022 -71707325 + MIR SINE MIR 13 262 0 1108 129 106 14 chr4 130621149 130621315 -71707032 - L1MA3 LINE L1 0 6305 6113 1838 154 34 0 chr4 130621315 130621613 -71706734 - AluJo SINE Alu -4 308 1 1108 129 106 14 chr4 130621613 130621663 -71706684 - L1MA3 LINE L1 -192 6113 6069 529 230 97 6 chr4 130622494 130622659 -71705688 - MIR SINE MIR 0 262 83 294 217 17 0 chr4 130622960 130623020 -71705327 + MIR SINE MIR 52 112 -96 377 275 176 58 chr4 130623316 130623421 -71704926 - L2 LINE L2 -831 2483 2392 2283 105 0 0 chr4 130623421 130623716 -71704631 + AluSc SINE Alu 1 295 -14 377 275 176 58 chr4 130623716 130623905 -71704442 - L2 LINE L2 -922 2392 2154 565 198 64 0 chr4 130623955 130624112 -71704235 + L1ME2 LINE L1 5997 6163 -1 208 240 40 0 chr4 130624182 130624232 -71704115 - L2 LINE L2 -10 3303 3252 265 232 146 0 chr4 130624456 130624538 -71703809 + MIR SINE MIR 124 217 -45 244 320 51 0 chr4 130624927 130625005 -71703342 - L2 LINE L2 0 3272 3191 1597 133 108 13 chr4 130625554 130625869 -71702478 - Tigger7 DNA MER2_type 0 2487 2143 1489 165 19 0 chr4 130625867 130626134 -71702213 + Tigger7 DNA MER2_type 75 346 -204 * 287 197 45 15 chr4 130626140 130626206 -71702141 - Tigger7 DNA MER2_type -480 70 3 669 198 36 88 chr4 130626662 130626854 -71701493 - MER5A DNA MER1_type -4 185 4 23 0 0 0 chr4 130626934 130626957 -71701390 + AT_rich Low_complexity Low_complexity 1 23 0 885 116 0 0 chr4 130627471 130627592 -71700755 - AluJb SINE Alu -191 121 1 752 240 56 0 chr4 130627624 130627820 -71700527 - MER82 DNA MER2_type -1 652 446 297 314 98 46 chr4 130627855 130628049 -71700298 + MIR SINE MIR 6 209 -53 251 250 38 12 chr4 130628049 130628129 -71700218 + (TA)n Simple_repeat Simple_repeat 1 82 0 447 158 21 32 chr4 130628130 130628225 -71700122 - MER82 DNA MER2_type -558 95 2 1112 165 38 79 chr4 130629729 130629865 -71698482 + MER33 DNA MER1_type 19 159 -2426 2092 123 7 23 chr4 130629865 130630165 -71698182 - AluJb SINE Alu -17 295 1 1112 165 38 79 chr4 130630165 130630343 -71698004 + MER33 DNA MER1_type 159 320 -4 21 0 0 0 chr4 130630701 130630722 -71697625 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 130631358 130631386 -71696961 + AT_rich Low_complexity Low_complexity 1 28 0 903 171 186 0 chr4 130631582 130631781 -71696566 - MER46A DNA MER2_type 0 236 1 368 346 54 44 chr4 130632577 130632782 -71695565 + L2 LINE L2 3066 3272 0 323 254 0 0 chr4 130633674 130633737 -71694610 - L2 LINE L2 0 3272 3210 1740 165 14 7 chr4 130634321 130634606 -71693741 - AluJb SINE Alu -25 287 1 807 196 22 0 chr4 130635103 130635241 -71693106 + FRAM SINE Alu 1 141 -35 1694 182 113 50 chr4 130635249 130635728 -71692619 - LTR22 LTR ERVK 0 509 1 427 140 190 0 chr4 130635779 130635879 -71692468 - LTR22 LTR ERVK -388 121 3 447 269 171 17 chr4 130635881 130636056 -71692291 - MIR SINE MIR -43 219 18 186 227 91 0 chr4 130637603 130637647 -71690700 - L2 LINE L2 -1 3271 3224 565 289 60 39 chr4 130637828 130638112 -71690235 + L2 LINE L2 3024 3313 0 22 94 0 0 chr4 130638404 130638468 -71689879 + AT_rich Low_complexity Low_complexity 1 64 0 802 122 53 15 chr4 130638849 130638980 -71689367 - MER5A DNA MER1_type -1 188 53 1038 205 211 6 chr4 130638986 130639342 -71689005 + LTR50 LTR ERVL 16 444 -351 234 114 0 23 chr4 130639783 130639827 -71688520 + LTR48 LTR ERV1 701 743 -44 2186 107 10 0 chr4 130639891 130640180 -71688167 - AluSg SINE Alu -18 292 1 215 263 263 0 chr4 130640200 130640299 -71688048 + MIR SINE MIR 102 226 -36 653 67 0 11 chr4 130640301 130640391 -71687956 - LTR12 LTR ERV1 -11 703 615 266 273 10 0 chr4 130640393 130640492 -71687855 - LTR30 LTR ERV1 -79 643 544 594 83 0 0 chr4 130640497 130640581 -71687766 - LTR12 LTR ERV1 -442 272 189 333 284 0 0 chr4 130641632 130641727 -71686620 + ERVL LTR ERVL 2766 2860 -2904 3903 100 47 21 chr4 130641755 130642255 -71686092 + MER41B LTR ERV1 1 487 -148 2038 126 3 16 chr4 130642255 130642565 -71685782 - AluSx SINE Alu -6 306 1 2411 77 3 6 chr4 130642567 130642879 -71685468 - AluY SINE Alu 0 311 1 3903 100 47 21 chr4 130642879 130642994 -71685353 + MER41B LTR ERV1 487 635 0 1445 150 62 0 chr4 130643174 130643447 -71684900 + MER49 LTR ERV1 5 294 -629 1176 210 27 70 chr4 130643485 130643856 -71684491 + MER4D LTR ERV1 549 903 0 1093 171 11 0 chr4 130644197 130644372 -71683975 - AluJb SINE Alu -15 297 121 308 239 76 33 chr4 130644406 130644498 -71683849 + MIR SINE MIR 59 154 -108 310 279 180 18 chr4 130645871 130645982 -71682365 - MIR3 SINE MIR -44 164 36 264 169 77 15 chr4 130646272 130646337 -71682010 - MIR SINE MIR -168 94 26 539 346 70 29 chr4 130647008 130647404 -71680943 + L2 LINE L2 2816 3272 0 2282 117 29 0 chr4 130647873 130648224 -71680123 - MER46B DNA MER2_type 0 236 1 2350 124 25 6 chr4 130648258 130648614 -71679733 - MLT1A1 LTR MaLR 0 365 3 926 193 27 49 chr4 130649117 130649340 -71679007 - L2 LINE L2 -17 3296 3079 202 253 84 43 chr4 130649659 130649831 -71678516 - MIR SINE MIR -26 236 2 997 291 50 56 chr4 130649881 130650324 -71678023 - L2 LINE L2 -3 3310 2871 1401 150 0 9 chr4 130650401 130650627 -71677720 + AluJb SINE Alu 85 308 -4 22 0 0 0 chr4 130652403 130652425 -71675922 + AT_rich Low_complexity Low_complexity 1 22 0 22 94 0 0 chr4 130653736 130653800 -71674547 + AT_rich Low_complexity Low_complexity 1 64 0 22 0 0 0 chr4 130653952 130653974 -71674373 + AT_rich Low_complexity Low_complexity 1 22 0 1823 148 31 17 chr4 130654594 130654885 -71673462 - AluJb SINE Alu -17 295 1 21 0 0 0 chr4 130655502 130655523 -71672824 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr4 130657009 130657033 -71671314 + (TTA)n Simple_repeat Simple_repeat 1 24 0 2481 39 0 0 chr4 130657854 130658138 -71670209 + AluY SINE Alu 1 318 0 241 59 0 0 chr4 130658138 130658172 -71670175 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 206 121 0 0 chr4 130659438 130659471 -71668876 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 22 56 0 0 chr4 130659748 130659784 -71668563 + AT_rich Low_complexity Low_complexity 1 36 0 2299 258 77 30 chr4 130660231 130661165 -71667182 - L2 LINE L2 -52 3261 2305 194 206 0 0 chr4 130661166 130661200 -71667147 - L2 LINE L2 -16 3297 3264 195 184 0 0 chr4 130662284 130662322 -71666025 + (TA)n Simple_repeat Simple_repeat 1 38 0 1610 172 26 23 chr4 130663607 130663741 -71664606 + AluJb SINE Alu 1 133 -179 2206 117 7 0 chr4 130663741 130664041 -71664306 + AluSq SINE Alu 1 302 -11 1610 172 26 23 chr4 130664041 130664209 -71664138 + AluJb SINE Alu 133 304 -8 1187 148 0 16 chr4 130664317 130664500 -71663847 - AluJo SINE Alu -102 210 31 2049 146 0 19 chr4 130665621 130665936 -71662411 - AluSg SINE Alu -1 309 1 2576 55 13 0 chr4 130666114 130666423 -71661924 - AluSp SINE Alu 0 313 1 241 304 38 13 chr4 130666585 130666664 -71661683 - MIR3 SINE MIR -6 202 122 42169 43 1 3 chr4 130666675 130672835 -71655512 - L1PA4 LINE L1 -3 6152 2 24 32 0 0 chr4 130673549 130673580 -71654767 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 130674238 130674266 -71654081 + AT_rich Low_complexity Low_complexity 1 28 0 370 203 72 80 chr4 130674628 130674766 -71653581 - L1ME4a LINE L1 -1 6120 5984 443 179 0 0 chr4 130674767 130674845 -71653502 - MER2 DNA MER2_type 0 345 268 22 35 0 0 chr4 130674855 130674884 -71653463 + AT_rich Low_complexity Low_complexity 1 29 0 766 128 0 0 chr4 130674896 130675013 -71653334 + Tigger2 DNA MER2_type 1 117 -2601 249 30 0 0 chr4 130675014 130675047 -71653300 + Tigger2 DNA MER2_type 2506 2538 -180 5530 27 6 2 chr4 130675148 130675769 -71652578 + SVA Other Other 755 1378 -8 2204 125 3 0 chr4 130675939 130676250 -71652097 - AluSx SINE Alu 0 312 1 682 337 167 8 chr4 130676351 130676752 -71651595 - L3 LINE CR1 -433 1144 680 314 357 67 11 chr4 130676773 130677148 -71651199 + L1MC4a LINE L1 5530 5925 -1883 1686 162 3 32 chr4 130677504 130677818 -71650529 + AluJb SINE Alu 6 310 -2 23 54 0 0 chr4 130678280 130678317 -71650030 + AT_rich Low_complexity Low_complexity 1 37 0 2284 100 3 28 chr4 130678879 130679198 -71649149 + AluSx SINE Alu 1 311 -1 305 287 30 85 chr4 130679316 130679480 -71648867 - L1MC4a LINE L1 -1876 5932 5778 464 301 166 22 chr4 130679515 130679924 -71648423 - L1MC4a LINE L1 -2020 5788 5321 2179 109 0 0 chr4 130680514 130680822 -71647525 + AluSx SINE Alu 1 308 0 11367 99 20 21 chr4 130681007 130681762 -71646585 - Charlie3 DNA MER1_type 0 2706 1952 2132 124 3 0 chr4 130681762 130682061 -71646286 - AluSx SINE Alu -12 300 1 11367 99 20 21 chr4 130682061 130683062 -71645285 - Charlie3 DNA MER1_type -750 1956 950 2189 119 7 0 chr4 130683062 130683364 -71644983 - AluSq SINE Alu 0 313 10 2065 140 24 21 chr4 130683495 130683831 -71644516 - MER1B DNA MER1_type 0 337 1 369 308 104 33 chr4 130684291 130684502 -71643845 + L2 LINE L2 2451 2676 -638 240 271 66 33 chr4 130684530 130684652 -71643695 - L2 LINE L2 -1024 2290 2165 317 331 38 15 chr4 130684665 130684798 -71643549 - L2 LINE L2 -38 3275 3140 261 384 48 0 chr4 130684845 130684991 -71643356 - L2 LINE L2 -1179 2135 1983 647 249 107 11 chr4 130685002 130685179 -71643168 - MIR SINE MIR -11 251 58 2199 118 7 0 chr4 130685790 130686087 -71642260 + AluSx SINE Alu 1 299 -13 232 373 136 0 chr4 130686132 130686242 -71642105 - MIR3 SINE MIR -39 169 45 25 0 0 0 chr4 130686406 130686431 -71641916 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr4 130687357 130687387 -71640960 + AT_rich Low_complexity Low_complexity 1 30 0 328 365 34 20 chr4 130687451 130687599 -71640748 - MIR3 SINE MIR -2 206 57 197 304 157 0 chr4 130688026 130688128 -71640219 + L2 LINE L2 2884 3001 -271 208 280 27 40 chr4 130688157 130688232 -71640115 + MIR3 SINE MIR 94 167 -41 1776 168 14 7 chr4 130688694 130688979 -71639368 + AluJo SINE Alu 6 292 -20 725 200 0 15 chr4 130689235 130689370 -71638977 - FLAM_C SINE Alu 0 133 1 828 172 61 0 chr4 130689552 130689715 -71638632 - L1MC2 LINE L1 -8 6336 6164 708 267 134 47 chr4 130689854 130691458 -71636889 - L1ME3A LINE L1 -5 6234 4406 2988 161 82 9 chr4 130691458 130692018 -71636329 + MER7C DNA MER2_type 2 602 0 513 77 0 0 chr4 130692042 130692107 -71636240 - Alu SINE Alu -15 297 233 1743 124 29 0 chr4 130692113 130692387 -71635960 + Tigger3(Golem) DNA MER2_type 2748 3029 0 1266 101 222 14 chr4 130692410 130692617 -71635730 - AluSg1 SINE Alu -21 288 39 1629 268 82 33 chr4 130692630 130692692 -71635655 - L1MEc LINE L1 -1826 4389 4331 1833 178 7 7 chr4 130692692 130692996 -71635351 + AluJb SINE Alu 1 304 -8 1629 268 82 33 chr4 130692996 130695107 -71633240 - L1MEc LINE L1 -1884 4331 2095 1320 202 50 25 chr4 130695263 130695545 -71632802 - AluJo SINE Alu -23 289 1 35 41 0 0 chr4 130695699 130695748 -71632599 + AT_rich Low_complexity Low_complexity 1 49 0 280 172 52 0 chr4 130696055 130696113 -71632234 - Tigger5 DNA MER2_type -1 2322 2262 287 173 21 121 chr4 130696117 130696215 -71632132 - Tigger5 DNA MER2_type -225 193 51 2271 99 3 0 chr4 130696215 130696507 -71631840 - AluSp SINE Alu -20 293 1 287 173 21 121 chr4 130696507 130696553 -71631794 - Tigger5 DNA MER2_type -367 51 2 1173 141 116 113 chr4 130696634 130696997 -71631350 - MLT1A1 LTR MaLR -1 364 1 1027 266 149 2 chr4 130697007 130697410 -71630937 - LTR40b LTR ERVL 0 462 1 4414 183 15 23 chr4 130698698 130699706 -71628641 - MER52A LTR ERV1 0 1755 881 297 206 16 0 chr4 130699689 130699752 -71628595 - MER52A LTR ERV1 -714 1041 978 * 4054 196 145 19 chr4 130699758 130700740 -71627607 - MER52A LTR ERV1 -650 1105 1 609 195 23 0 chr4 130701060 130701188 -71627159 - L1MD1 LINE L1 0 6242 6112 1318 152 39 0 chr4 130701188 130701392 -71626955 + AluJb SINE Alu 1 212 -100 292 74 56 0 chr4 130701496 130701550 -71626797 + Tigger2 DNA MER2_type 61 117 -2601 1181 142 39 0 chr4 130701551 130701756 -71626591 + Tigger2 DNA MER2_type 2506 2718 0 913 151 62 6 chr4 130701756 130701935 -71626412 - MER2 DNA MER2_type -155 190 2 414 0 0 0 chr4 130701962 130702008 -71626339 + (CA)n Simple_repeat Simple_repeat 2 47 0 1382 145 21 13 chr4 130702133 130702367 -71625980 - LTR32 LTR ERVL 0 471 236 251 108 0 0 chr4 130702370 130702407 -71625940 - LTR32 LTR ERVL -422 49 13 795 189 42 16 chr4 130702413 130702604 -71625743 - HERVL32 LTR ERVL -6 3412 3217 2367 87 3 3 chr4 130703915 130704214 -71624133 - AluSq SINE Alu -14 299 1 949 156 29 6 chr4 130704811 130704984 -71623363 - MER2 DNA MER2_type -168 177 1 309 51 0 0 chr4 130705008 130705047 -71623300 + (CA)n Simple_repeat Simple_repeat 2 40 0 10046 227 68 51 chr4 130705451 130708606 -71619741 - HERVL32 LTR ERVL -205 3213 7 1321 168 25 17 chr4 130708613 130708851 -71619496 - LTR32 LTR ERVL 0 471 232 240 139 0 0 chr4 130708851 130708887 -71619460 - LTR32 LTR ERVL -422 49 14 * 496 222 29 69 chr4 130708884 130709042 -71619305 - MSTC LTR MaLR -292 136 1 1467 251 105 40 chr4 130709927 130710746 -71617601 + L1MA9 LINE L1 2788 3659 -3906 1548 239 23 3 chr4 130710912 130711301 -71617046 + L1MA9 LINE L1 3715 4111 -3454 23 33 0 0 chr4 130711304 130711334 -71617013 + AT_rich Low_complexity Low_complexity 1 30 0 1811 108 11 0 chr4 130711339 130711607 -71616740 - L1PB2 LINE L1 -15 6136 5866 8930 201 18 14 chr4 130711607 130712649 -71615698 + L1 LINE L1 3872 4926 -2639 2136 115 3 22 chr4 130712649 130712963 -71615384 + AluSp SINE Alu 1 308 -5 8930 201 18 14 chr4 130712963 130713978 -71614369 + L1 LINE L1 4926 5936 -1629 1661 187 9 3 chr4 130713977 130714303 -71614044 - L1PBa LINE L1 -5127 1736 1409 * 11100 174 40 38 chr4 130714303 130714912 -71613435 + L1MA9 LINE L1 4097 4704 -3074 2445 82 3 0 chr4 130714912 130715218 -71613129 + AluSg SINE Alu 1 307 -3 11100 174 40 38 chr4 130715218 130718157 -71610190 + L1MA9 LINE L1 4704 7659 -119 715 127 75 15 chr4 130718164 130718298 -71610049 - AluJb SINE Alu -13 299 158 73 69 0 0 chr4 130718531 130718633 -71609714 + AT_rich Low_complexity Low_complexity 1 102 0 684 115 0 0 chr4 130718681 130718803 -71609544 + (T)n Simple_repeat Simple_repeat 1 122 0 211 320 13 13 chr4 130718926 130719004 -71609343 - MIR SINE MIR -170 92 15 596 115 10 0 chr4 130719193 130719289 -71609058 - AluSg/x SINE Alu -5 307 211 371 202 21 32 chr4 130719542 130719636 -71608711 + MIR3 SINE MIR 81 173 -35 292 253 0 24 chr4 130719665 130719748 -71608599 + GA-rich Low_complexity Low_complexity 2 82 0 180 0 0 0 chr4 130720298 130720318 -71608029 + (TTG)n Simple_repeat Simple_repeat 2 21 0 181 196 22 22 chr4 130720459 130720505 -71607842 + L2 LINE L2 3268 3313 0 750 174 65 76 chr4 130721132 130721316 -71607031 - MER5A DNA MER1_type -7 182 1 218 373 51 25 chr4 130721326 130721484 -71606863 + MER5B DNA MER1_type 1 162 -16 598 228 67 22 chr4 130721531 130721711 -71606636 - MER5A DNA MER1_type -1 188 1 21 36 0 0 chr4 130722571 130722599 -71605748 + AT_rich Low_complexity Low_complexity 1 28 0 275 317 105 24 chr4 130723584 130723783 -71604564 + MIR SINE MIR 50 257 -5 2010 135 3 7 chr4 130724077 130724365 -71603982 - AluSx SINE Alu -16 296 10 2044 140 24 21 chr4 130724496 130724832 -71603515 - MER1B DNA MER1_type 0 337 1 21 0 0 0 chr4 130725637 130725658 -71602689 + AT_rich Low_complexity Low_complexity 1 21 0 602 190 15 0 chr4 130726278 130726415 -71601932 - L1MEc LINE L1 -3099 3116 2978 2414 270 78 25 chr4 130726416 130727592 -71600755 - L1MEc LINE L1 -4349 2047 810 185 132 26 0 chr4 130727611 130727649 -71600698 + T-rich Low_complexity Low_complexity 2 40 0 458 193 6 114 chr4 130727688 130727854 -71600493 - L1MEc LINE L1 -5566 830 683 204 280 160 0 chr4 130728541 130728616 -71599731 + L2 LINE L2 3186 3272 0 273 163 38 7 chr4 130728683 130728746 -71599601 - MLT2B3 LTR ERVL 0 554 357 396 181 0 0 chr4 130728748 130728831 -71599516 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 3040 164 26 21 chr4 130728831 130729362 -71598985 - MLT2B3 LTR ERVL -20 534 1 423 139 0 0 chr4 130729380 130729452 -71598895 - L1MB8 LINE L1 -5 6173 6102 455 334 48 70 chr4 130730173 130730487 -71597860 - L2 LINE L2 0 3272 2966 294 212 45 21 chr4 130730897 130731000 -71597347 + L1MD3 LINE L1 7294 7610 -385 1802 72 8 1 chr4 130731651 130731921 -71596426 - L1PA8 LINE L1 -30 6144 5870 362 93 0 0 chr4 130731921 130731973 -71596374 + L1PA8 LINE L1 6116 6169 -3 2541 79 126 20 chr4 130732039 130732444 -71595903 + LTR7 LTR ERV1 1 448 -2 1261 128 10 0 chr4 130732446 130732641 -71595706 + HERVH LTR ERV1 1 197 -7516 2434 79 7 0 chr4 130733656 130733959 -71594388 - AluY SINE Alu -6 305 1 772 176 71 18 chr4 130734596 130734766 -71593581 + MER7A DNA MER2_type 1 177 -169 1129 236 99 6 chr4 130734879 130735213 -71593134 - L1MC4 LINE L1 -424 7618 7254 2160 137 0 3 chr4 130735215 130735528 -71592819 + AluSx SINE Alu 1 312 0 244 321 23 8 chr4 130735572 130735703 -71592644 - L1MC4a LINE L1 -831 6977 6845 324 164 90 0 chr4 130735763 130735830 -71592517 + MIR SINE MIR 189 261 -1 4137 190 92 5 chr4 130735901 130736820 -71591527 - L1MA6 LINE L1 0 6300 5302 25 0 0 0 chr4 130738013 130738038 -71590309 + AT_rich Low_complexity Low_complexity 1 25 0 415 285 34 53 chr4 130738119 130738310 -71590037 + MIR3 SINE MIR 1 197 -11 583 294 25 6 chr4 130738413 130738576 -71589771 + MIR SINE MIR 51 216 -46 294 297 14 0 chr4 130739951 130740025 -71588322 + MER58 DNA MER1_type 205 279 -2141 23 0 0 0 chr4 130740217 130740240 -71588107 + AT_rich Low_complexity Low_complexity 1 23 0 2118 107 3 19 chr4 130740300 130740610 -71587737 - AluSc SINE Alu -4 305 1 310 244 51 0 chr4 130741383 130741461 -71586886 + MIR3 SINE MIR 124 205 -3 380 224 90 58 chr4 130742013 130742169 -71586178 + MER104 DNA Tc2 16 176 -4 1335 82 6 6 chr4 130742454 130742625 -71585722 + AluSg/x SINE Alu 109 279 -33 285 306 19 32 chr4 130742946 130743162 -71585185 + L1M3de LINE L1 1756 1968 -4685 1871 108 4 8 chr4 130743234 130743494 -71584853 + AluSx SINE Alu 40 298 -14 946 141 86 5 chr4 130744460 130744658 -71583689 + L1MA7 LINE L1 6073 6286 -5 262 167 21 0 chr4 130745376 130745424 -71582923 - L1MC3 LINE L1 -445 7340 7292 691 245 23 9 chr4 130745425 130745599 -71582748 + MER8 DNA MER2_type 2 177 -62 823 173 80 6 chr4 130745677 130745839 -71582508 - L1MC3 LINE L1 -492 7293 7120 290 368 108 0 chr4 130745870 130746036 -71582311 - MIR SINE MIR -76 186 3 395 285 39 8 chr4 130746404 130746534 -71581813 + MIR SINE MIR 5 138 -124 2200 196 7 19 chr4 130746693 130747013 -71581334 - MER47B DNA MER2_type -1905 418 103 2030 94 0 75 chr4 130747013 130747331 -71581016 + AluSg1 SINE Alu 1 294 -15 2200 196 7 19 chr4 130747331 130747433 -71580914 - MER47B DNA MER2_type -2220 103 1 2064 132 0 3 chr4 130748276 130748571 -71579776 + AluSx SINE Alu 3 296 -16 186 323 31 46 chr4 130748922 130748987 -71579360 - MIR SINE MIR -177 85 22 22 0 0 0 chr4 130748995 130749017 -71579330 + AT_rich Low_complexity Low_complexity 1 22 0 2453 59 3 13 chr4 130749555 130749860 -71578487 - AluSp SINE Alu -11 302 1 1732 209 32 3 chr4 130750338 130750683 -71577664 + MLT1A1 LTR MaLR 11 365 0 46 0 0 0 chr4 130750767 130750813 -71577534 + AT_rich Low_complexity Low_complexity 1 46 0 28 0 0 0 chr4 130751360 130751388 -71576959 + AT_rich Low_complexity Low_complexity 1 28 0 6409 52 4 7 chr4 130753053 130753822 -71574525 - SVA Other Other 0 1386 620 4504 80 21 65 chr4 130753922 130754782 -71573565 + SVA Other Other 190 866 -590 219 69 0 0 chr4 130754782 130754811 -71573536 + (CA)n Simple_repeat Simple_repeat 1 29 0 198 118 0 0 chr4 130756644 130756678 -71571669 + (T)n Simple_repeat Simple_repeat 1 34 0 511 120 0 0 chr4 130757174 130757249 -71571098 - MER30B DNA MER1_type -109 81 7 377 22 0 0 chr4 130757561 130757606 -71570741 - AluSq/x SINE Alu -172 131 87 625 263 67 34 chr4 130757820 130758029 -71570318 - MIR SINE MIR 0 262 47 268 289 56 0 chr4 130758173 130758263 -71570084 + L1ME4a LINE L1 5971 6065 -56 270 125 0 0 chr4 130758925 130758973 -71569374 + (CA)n Simple_repeat Simple_repeat 2 49 0 1630 116 0 0 chr4 130759118 130759350 -71568997 - AluSq SINE Alu -14 299 68 305 282 108 47 chr4 130759432 130759896 -71568451 - L1ME LINE L1 -281 5840 5349 23 0 0 0 chr4 130759959 130759982 -71568365 + AT_rich Low_complexity Low_complexity 1 23 0 7537 24 3 0 chr4 130760548 130761957 -71566390 + L1PA3 LINE L1 4754 6165 0 702 161 8 0 chr4 130762006 130762130 -71566217 + L1PA16 LINE L1 6040 6164 -2 1196 177 36 0 chr4 130762339 130762559 -71565788 + MER46A DNA MER2_type 9 236 0 1792 171 3 3 chr4 130763352 130763644 -71564703 + AluJo SINE Alu 9 300 -12 1555 83 115 0 chr4 130763910 130764127 -71564220 + AluY SINE Alu 1 242 -69 347 167 18 40 chr4 130767213 130767330 -71561017 - MLT1H LTR MaLR 0 565 431 626 309 59 18 chr4 130767358 130767698 -71560649 - MLT1H LTR MaLR -185 364 11 389 202 18 37 chr4 130767772 130767881 -71560466 - MER103 DNA DNA -58 108 2 1424 225 0 26 chr4 130767922 130768224 -71560123 + AluJo SINE Alu 1 294 -8 1918 247 118 15 chr4 130768496 130768645 -71559702 + L1M3e LINE L1 10 142 -6895 1540 213 3 29 chr4 130768645 130768960 -71559387 + AluJb SINE Alu 1 307 -5 1918 247 118 15 chr4 130768960 130770116 -71558231 + L1M3e LINE L1 142 1178 -5859 2106 127 7 0 chr4 130770116 130770416 -71557931 + AluSc SINE Alu 1 302 -7 1918 247 118 15 chr4 130770416 130770456 -71557891 + L1M3e LINE L1 1178 2503 -4534 546 257 132 0 chr4 130770728 130770872 -71557475 + MER58C DNA MER1_type 32 194 -21 2447 69 0 34 chr4 130771450 130771770 -71556577 - AluY SINE Alu -2 309 1 2148 117 13 0 chr4 130771868 130772177 -71556170 - AluSp SINE Alu 0 313 1 1575 181 47 47 chr4 130772497 130772862 -71555485 - MLT1A1 LTR MaLR 0 365 1 1300 287 121 32 chr4 130772944 130773807 -71554540 - L1MDb LINE L1 -4186 2401 1359 7692 132 38 2 chr4 130773807 130775062 -71553285 - HSMAR2 DNA Mariner -1 1301 2 1300 287 121 32 chr4 130775062 130775323 -71553024 - L1MDb LINE L1 -5228 1359 1123 517 163 78 7 chr4 130775583 130775724 -71552623 - L1MC4 LINE L1 -130 7912 7762 13185 183 42 24 chr4 130775838 130776363 -71551984 + L1M3e LINE L1 2639 3153 -3953 1891 107 29 29 chr4 130776363 130776643 -71551704 + AluSg SINE Alu 16 295 -15 13185 183 42 24 chr4 130776643 130779383 -71548964 + L1M3e LINE L1 3153 5981 -1125 1532 176 34 20 chr4 130779383 130779679 -71548668 + AluJo SINE Alu 1 300 -12 13185 183 42 24 chr4 130779679 130779899 -71548448 + L1M3e LINE L1 5981 6196 -910 635 185 40 60 chr4 130780284 130780435 -71547912 + Tigger3(Golem) DNA MER2_type 2889 3036 0 2058 157 28 8 chr4 130780962 130781319 -71547028 + THE1B LTR MaLR 1 364 0 7800 110 40 53 chr4 130781319 130782618 -71545729 + THE1B-int LTR MaLR 1 1282 -298 7214 26 0 1 chr4 130782618 130783504 -71544843 + L1PA3 LINE L1 5288 6172 0 2352 77 7 0 chr4 130783520 130783830 -71544517 + THE1B-int LTR MaLR 1269 1580 0 2061 122 38 54 chr4 130783830 130783990 -71544357 + THE1B LTR MaLR 1 162 -202 2235 118 0 0 chr4 130783990 130784296 -71544051 - AluSq SINE Alu -7 306 1 2061 122 38 54 chr4 130784296 130784505 -71543842 + THE1B LTR MaLR 162 364 0 189 0 0 0 chr4 130784807 130784828 -71543519 + (TG)n Simple_repeat Simple_repeat 2 22 0 751 285 32 9 chr4 130785683 130785904 -71542443 + MIR SINE MIR 37 262 0 26 0 0 0 chr4 130786037 130786063 -71542284 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 130786546 130786567 -71541780 + AT_rich Low_complexity Low_complexity 1 21 0 2115 74 0 0 chr4 130786639 130786895 -71541452 - AluY SINE Alu -20 291 36 256 289 0 0 chr4 130787000 130787083 -71541264 + L1M3a LINE L1 296 378 -5871 436 372 4 31 chr4 130787085 130787311 -71541036 + L1M3a LINE L1 434 653 -5596 2212 239 20 22 chr4 130787998 130788144 -71540203 + L1M3a LINE L1 539 684 -4686 1817 232 64 51 chr4 130788144 130788691 -71539656 + MLT2B3 LTR ERVL 1 554 0 2212 239 20 22 chr4 130788691 130789286 -71539061 + L1M3a LINE L1 684 1273 -4097 42263 43 1 1 chr4 130789395 130794612 -71533735 - L1P LINE L1 -928 5218 2 2026 227 99 12 chr4 130794615 130795298 -71533049 - L1M4 LINE L1 -2214 3932 3175 1970 156 0 13 chr4 130795298 130795606 -71532741 - AluSx SINE Alu -8 304 1 2026 227 99 12 chr4 130795606 130795683 -71532664 - L1M4 LINE L1 -2971 3175 3106 1541 213 55 107 chr4 130795807 130796366 -71531981 - L1MCa LINE L1 -1836 4590 4061 761 141 8 16 chr4 130796368 130796496 -71531851 - FRAM SINE Alu -3 173 47 2353 249 48 6 chr4 130796496 130797312 -71531035 - L1MCa LINE L1 -2362 4064 3215 309 224 47 24 chr4 130797353 130797438 -71530909 + L1MC4 LINE L1 6614 6700 -1342 201 39 0 0 chr4 130797439 130797465 -71530882 + (CAGAGA)n Simple_repeat Simple_repeat 2 27 0 1529 195 0 7 chr4 130797465 130797742 -71530605 - AluJb SINE Alu -37 275 1 6393 201 81 70 chr4 130797744 130800895 -71527452 - L1MCa LINE L1 -3215 3211 23 271 331 87 27 chr4 130800901 130801085 -71527262 + L2 LINE L2 2654 2848 -466 1736 148 133 18 chr4 130801489 130801873 -71526474 + MSTA LTR MaLR 1 428 0 1956 136 17 10 chr4 130802543 130802844 -71525503 - AluSx SINE Alu -9 303 1 2595 178 24 13 chr4 130803787 130804254 -71524093 - MER70A LTR ERVL 0 472 1 2199 243 54 12 chr4 130805495 130806054 -71522293 - MLT1E3 LTR MaLR 0 624 43 1335 203 132 33 chr4 130806054 130806493 -71521854 - MER66A LTR ERV1 0 478 97 1827 134 36 0 chr4 130806572 130806849 -71521498 - MER66A-int LTR ERV1 0 6676 6390 * 1838 129 45 92 chr4 130806838 130807241 -71521106 - MER66-int LTR ERV1 -1735 4941 4558 511 231 9 22 chr4 130807242 130807365 -71520982 - MER4D LTR ERV1 -580 142 35 2774 178 45 45 chr4 130807365 130808000 -71520347 - MER66-int LTR ERV1 -2235 4441 1884 267 152 0 0 chr4 130808017 130808063 -71520284 + (TA)n Simple_repeat Simple_repeat 2 47 0 22 35 0 0 chr4 130808189 130808218 -71520129 + AT_rich Low_complexity Low_complexity 1 29 0 674 233 55 6 chr4 130809934 130810097 -71518250 - FAM SINE Alu -4 171 1 1260 252 40 3 chr4 130810779 130811108 -71517239 + MER58B DNA MER1_type 1 341 0 6061 130 37 10 chr4 130811202 130812482 -71515865 - L1MA8 LINE L1 -6 6285 4985 742 346 60 65 chr4 130813035 130813757 -71514590 - L3 LINE CR1 -15 1562 845 256 272 62 0 chr4 130813943 130814024 -71514323 - L3 LINE CR1 -758 819 734 325 353 64 5 chr4 130814851 130815038 -71513309 + MIR3 SINE MIR 8 205 -3 186 43 0 0 chr4 130815259 130815282 -71513065 + (A)n Simple_repeat Simple_repeat 1 23 0 243 0 0 0 chr4 130815762 130815789 -71512558 + (TG)n Simple_repeat Simple_repeat 2 28 0 378 0 0 0 chr4 130816073 130816115 -71512232 + (TG)n Simple_repeat Simple_repeat 1 42 0 1957 219 97 22 chr4 130816874 130817332 -71511015 + L1ME1 LINE L1 5582 6089 -77 14030 141 28 11 chr4 130817332 130819709 -71508638 + Tigger1 DNA MER2_type 1 2418 0 1957 219 97 22 chr4 130819709 130819794 -71508553 + L1ME1 LINE L1 6089 6166 0 6063 173 151 37 chr4 130819979 130821451 -71506896 - MER52A LTR ERV1 -6 1749 1 687 200 47 0 chr4 130822591 130822741 -71505606 + MER58A DNA MER1_type 45 201 -23 498 326 37 16 chr4 130823930 130824172 -71504175 - MIR SINE MIR 0 262 16 237 33 0 0 chr4 130824985 130825015 -71503332 + (TTC)n Simple_repeat Simple_repeat 2 31 0 1937 118 52 0 chr4 130825028 130825300 -71503047 - AluSx SINE Alu -26 286 1 3093 147 42 172 chr4 130826964 130828091 -71500256 - MER52C LTR ERV1 0 1278 16 1503 173 4 0 chr4 130829193 130829447 -71498900 - AluJo SINE Alu -24 288 34 728 170 85 46 chr4 130829713 130829866 -71498481 + MER20 DNA MER1_type 61 219 0 184 284 49 37 chr4 130830293 130830374 -71497973 + MIR SINE MIR 64 145 -117 26 0 0 0 chr4 130831128 130831154 -71497193 + AT_rich Low_complexity Low_complexity 1 26 0 353 114 67 0 chr4 130831549 130831654 -71496693 + (TA)n Simple_repeat Simple_repeat 2 113 0 993 287 72 14 chr4 130831654 130832072 -71496275 - L1MC4a LINE L1 -1849 5959 5518 24 32 0 0 chr4 130832423 130832454 -71495893 + AT_rich Low_complexity Low_complexity 1 31 0 247 325 25 0 chr4 130832520 130832600 -71495747 + L2 LINE L2 3186 3267 -5 1969 109 101 23 chr4 130833052 130833400 -71494947 - THE1C LTR MaLR 0 375 1 6600 125 48 38 chr4 130833863 130835082 -71493265 + Tigger3b DNA MER2_type 1 1231 0 2200 152 6 0 chr4 130835538 130835899 -71492448 - MER47A DNA MER2_type 0 366 4 6120 41 3 17 chr4 130836871 130836965 -71491382 + L1PA5 LINE L1 5397 5491 -663 2064 113 6 22 chr4 130836965 130837276 -71491071 + AluY SINE Alu 1 306 -5 6120 41 3 17 chr4 130837276 130837944 -71490403 + L1PA5 LINE L1 5491 6148 -6 200 304 161 25 chr4 130838833 130838994 -71489353 + L2 LINE L2 1872 2054 -1260 2677 103 3 13 chr4 130839780 130840159 -71488188 + THE1C LTR MaLR 1 375 0 1268 186 82 25 chr4 130840240 130840520 -71487827 + AluJb SINE Alu 1 296 -16 27 49 0 0 chr4 130840853 130840894 -71487453 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr4 130841860 130841882 -71486465 + AT_rich Low_complexity Low_complexity 1 22 0 526 296 49 49 chr4 130842596 130842822 -71485525 - MLT1J LTR MaLR -242 269 44 336 353 63 0 chr4 130842842 130843049 -71485298 + L2 LINE L2 1954 2173 -1141 387 231 146 8 chr4 130843168 130843298 -71485049 - MIR SINE MIR -44 218 71 1655 190 3 26 chr4 130843308 130843618 -71484729 - AluJo SINE Alu -7 305 3 2220 248 86 36 chr4 130843620 130844552 -71483795 - L1ME1 LINE L1 -55 6111 5137 3289 156 60 69 chr4 130844613 130845425 -71482922 - L1MB2 LINE L1 -1 6170 5366 1497 157 43 33 chr4 130845430 130845826 -71482521 - L1MA9 LINE L1 -5 6307 5783 391 159 29 0 chr4 130845848 130845917 -71482430 + L1M2 LINE L1 5712 5782 -530 285 98 0 0 chr4 130845922 130845963 -71482384 + (TA)n Simple_repeat Simple_repeat 1 41 0 730 110 25 17 chr4 130845968 130846086 -71482261 - L1MA9 LINE L1 -519 5793 5675 2567 47 0 0 chr4 130846116 130846415 -71481932 - AluY SINE Alu -12 299 1 430 256 63 123 chr4 130846439 130846819 -71481528 - MER65A LTR ERV1 0 445 97 240 35 0 0 chr4 130846819 130846848 -71481499 + (TG)n Simple_repeat Simple_repeat 1 29 0 430 256 63 123 chr4 130846848 130846940 -71481407 - MER65A LTR ERV1 -348 97 1 3142 175 58 45 chr4 130846940 130847960 -71480387 - L1M2 LINE L1 -646 5645 4614 * 4650 172 19 10 chr4 130847952 130848843 -71479504 + L1 LINE L1 3331 4229 -1917 1971 156 30 0 chr4 130848843 130849177 -71479170 - MER2 DNA MER2_type 0 345 2 953 136 80 24 chr4 130849177 130849390 -71478957 + L1 LINE L1 4227 4451 -1695 * 977 241 93 61 chr4 130849388 130849594 -71478753 - L1MEc LINE L1 -3281 2934 2736 2295 103 0 28 chr4 130849594 130849729 -71478618 + AluSp SINE Alu 1 138 -175 2237 73 3 27 chr4 130849729 130850029 -71478318 + AluY SINE Alu 1 293 -18 2295 103 0 28 chr4 130850029 130850213 -71478134 + AluSp SINE Alu 138 311 -2 977 241 93 61 chr4 130850213 130850257 -71478090 - L1MEc LINE L1 -3479 2736 2695 1769 157 59 19 chr4 130850257 130850581 -71477766 - MER1B DNA MER1_type 0 337 1 977 241 93 61 chr4 130850581 130851296 -71477051 - L1MEc LINE L1 -3520 2695 1974 454 262 74 0 chr4 130851547 130851669 -71476678 - MIR SINE MIR -125 137 7 23 68 0 0 chr4 130852034 130852078 -71476269 + AT_rich Low_complexity Low_complexity 1 44 0 189 366 155 0 chr4 130854092 130854253 -71474094 + L3 LINE CR1 794 979 -598 2418 83 0 0 chr4 130854816 130855116 -71473231 - AluY SINE Alu -11 300 1 1699 225 18 20 chr4 130855172 130855567 -71472780 - LTR40a LTR ERVL -1 518 125 502 129 54 11 chr4 130855578 130855671 -71472676 - L1MB7 LINE L1 -47 6137 6041 415 98 33 0 chr4 130855671 130855732 -71472615 - LTR40a LTR ERVL -452 67 5 196 281 88 61 chr4 130856835 130856949 -71471398 + L2 LINE L2 3197 3313 0 230 266 110 58 chr4 130857414 130857507 -71470840 + L2 LINE L2 1900 2006 -1308 2258 112 0 3 chr4 130857507 130857819 -71470528 - AluY SINE Alu 0 311 1 230 266 110 58 chr4 130857819 130857879 -71470468 + L2 LINE L2 2006 2061 -1253 1335 223 5 65 chr4 130857882 130858249 -71470098 + MLT1A2 LTR MaLR 25 369 -5 214 339 76 34 chr4 130858261 130858497 -71469850 + L2 LINE L2 2077 2322 -992 5491 193 20 41 chr4 130858702 130860664 -71467683 - L1MC1 LINE L1 0 6333 4428 21 0 0 0 chr4 130860773 130860794 -71467553 + AT_rich Low_complexity Low_complexity 1 21 0 510 357 103 11 chr4 130861026 130861298 -71467049 + L3 LINE CR1 793 1089 -488 1201 103 5 16 chr4 130861587 130861771 -71466576 + AluSg/x SINE Alu 128 309 0 1033 147 21 11 chr4 130861778 130861969 -71466378 + MER47B DNA MER2_type 218 410 -8 667 213 0 46 chr4 130861980 130862154 -71466193 - L1 LINE L1 -789 5357 5192 211 219 0 0 chr4 130862529 130862570 -71465777 + (TATG)n Simple_repeat Simple_repeat 3 43 0 24 0 0 0 chr4 130862702 130862726 -71465621 + AT_rich Low_complexity Low_complexity 1 24 0 1261 154 8 49 chr4 130863198 130863444 -71464903 + MER46A DNA MER2_type 1 236 0 33 0 0 0 chr4 130865035 130865068 -71463279 + AT_rich Low_complexity Low_complexity 1 33 0 239 333 72 22 chr4 130865396 130865534 -71462813 - MIR SINE MIR -101 161 17 227 164 3 0 chr4 130865614 130865658 -71462689 - MIR SINE MIR -63 145 107 377 234 189 11 chr4 130865952 130866127 -71462220 + HAL1 LINE L1 1481 1686 -821 307 250 145 57 chr4 130867097 130867221 -71461126 + Charlie2 DNA MER1_type 54 188 -2674 1304 236 158 38 chr4 130867432 130868097 -71460250 + Charlie2 DNA MER1_type 2012 2756 -106 2499 70 0 0 chr4 130868668 130868966 -71459381 - AluSx SINE Alu -13 299 2 943 139 7 7 chr4 130869697 130869841 -71458506 - AluSg/x SINE Alu -20 290 147 10773 91 7 41 chr4 130869843 130872187 -71456160 + L1PA7 LINE L1 3826 6146 -8 3016 134 26 0 chr4 130872190 130872728 -71455619 + L1MC/D LINE L1 5188 5739 -594 259 231 99 33 chr4 130872805 130872896 -71455451 - MIR SINE MIR -1 261 165 332 256 116 107 chr4 130873055 130873336 -71455011 - MLT1H LTR MaLR -206 343 24 540 90 0 0 chr4 130873336 130873414 -71454933 - L1PA11 LINE L1 -1 6173 6096 332 256 116 107 chr4 130873414 130873439 -71454908 - MLT1H LTR MaLR -525 24 1 667 253 16 113 chr4 130873580 130874030 -71454317 + L1MEc LINE L1 1361 1766 -4630 329 289 89 63 chr4 130874499 130874689 -71453658 + MIR SINE MIR 57 251 -11 263 228 0 18 chr4 130874835 130874892 -71453455 + CT-rich Low_complexity Low_complexity 4 59 0 1652 193 30 0 chr4 130874955 130875256 -71453091 - AluJo SINE Alu 0 312 3 1278 194 98 22 chr4 130875382 130875697 -71452650 - MER2 DNA MER2_type 0 345 7 1009 167 52 0 chr4 130875793 130875967 -71452380 - MSTB LTR MaLR 0 426 244 219 69 0 0 chr4 130876747 130876776 -71451571 + (A)n Simple_repeat Simple_repeat 1 29 0 2271 101 0 26 chr4 130877002 130877309 -71451038 - AluSx SINE Alu -13 299 1 368 118 0 0 chr4 130877601 130877652 -71450695 - 5S rRNA rRNA -70 51 1 212 352 45 0 chr4 130878936 130879024 -71449323 - MIR3 SINE MIR -7 201 110 430 173 25 0 chr4 130879400 130879481 -71448866 - HsTC2 DNA Tc2 -18 1880 1798 234 0 0 0 chr4 130880004 130880030 -71448317 + (TTG)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr4 130880233 130880255 -71448092 + AT_rich Low_complexity Low_complexity 1 22 0 1950 142 13 13 chr4 130880716 130881034 -71447313 - MER44D DNA MER2_type -1 608 21 329 376 40 0 chr4 130881060 130881185 -71447162 + L2 LINE L2 3143 3272 0 387 259 98 85 chr4 130881892 130882116 -71446231 + L3 LINE CR1 1091 1317 -260 314 338 126 15 chr4 130882119 130882317 -71446030 + L3 LINE CR1 1104 1323 -254 580 331 62 8 chr4 130882708 130882950 -71445397 + MIR SINE MIR 6 260 -2 358 310 53 73 chr4 130882997 130883141 -71445206 + MIR SINE MIR 6 144 -118 2264 91 0 26 chr4 130883141 130883449 -71444898 + AluSg SINE Alu 1 300 -10 358 310 53 73 chr4 130883449 130883549 -71444798 + MIR SINE MIR 144 245 -17 1583 84 0 33 chr4 130884361 130884576 -71443771 - AluSg/x SINE Alu -18 292 85 919 232 11 26 chr4 130885126 130885398 -71442949 + L1MB8 LINE L1 5910 6177 -1 26 30 0 0 chr4 130885418 130885451 -71442896 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr4 130885557 130885582 -71442765 + AT_rich Low_complexity Low_complexity 1 25 0 2534 114 75 15 chr4 130886078 130886480 -71441867 + MLT2A1 LTR ERVL 1 426 -18 592 241 206 5 chr4 130886906 130887105 -71441242 + MIR SINE MIR 5 243 -19 340 138 28 18 chr4 130887159 130887268 -71441079 + (TA)n Simple_repeat Simple_repeat 1 110 0 2438 74 0 0 chr4 130887327 130887638 -71440709 - AluY SINE Alu 0 311 1 24 0 0 0 chr4 130888429 130888453 -71439894 + AT_rich Low_complexity Low_complexity 1 24 0 1971 117 50 10 chr4 130889473 130889773 -71438574 - AluSx SINE Alu 0 312 1 462 263 84 50 chr4 130890848 130891027 -71437320 + MIR SINE MIR 78 262 0 756 261 36 5 chr4 130891050 130891245 -71437102 + MIR SINE MIR 37 237 -25 224 237 274 30 chr4 130891578 130891713 -71436634 + L2 LINE L2 3124 3291 -22 403 282 93 106 chr4 130892986 130893331 -71435016 + L1ME LINE L1 3439 3774 -2372 2329 101 0 0 chr4 130893331 130893638 -71434709 - AluSg SINE Alu -3 307 1 403 282 93 106 chr4 130893638 130893895 -71434452 + L1ME LINE L1 3774 4033 -2113 234 349 12 0 chr4 130894229 130894401 -71433946 + L1ME LINE L1 4397 4570 -1576 236 267 0 0 chr4 130894552 130894627 -71433720 + L1ME LINE L1 4762 4836 -1310 346 302 8 0 chr4 130894684 130894813 -71433534 + L1ME LINE L1 4944 5073 -1073 31 0 0 0 chr4 130894813 130894844 -71433503 + AT_rich Low_complexity Low_complexity 1 31 0 1310 166 43 8 chr4 130894844 130895079 -71433268 - AluJb SINE Alu -26 286 44 332 319 64 47 chr4 130895079 130895314 -71433033 + L1ME LINE L1 5060 5298 -848 688 340 40 27 chr4 130895329 130895818 -71432529 + L1ME LINE L1 5325 5817 -345 2498 207 53 14 chr4 130895830 130896396 -71431951 - MER90 LTR ERV1 -3 611 24 22 0 0 0 chr4 130896484 130896506 -71431841 + AT_rich Low_complexity Low_complexity 1 22 0 2285 70 0 64 chr4 130897193 130897506 -71430841 - AluSc SINE Alu -10 299 7 1069 154 22 0 chr4 130898129 130898311 -71430036 - L1PB4 LINE L1 -13 6143 5958 342 0 0 0 chr4 130899309 130899347 -71429000 + (CTTA)n Simple_repeat Simple_repeat 1 38 0 1427 183 47 25 chr4 130899366 130899520 -71428827 - AluSx SINE Alu -32 280 116 200 33 0 33 chr4 130899520 130899550 -71428797 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 1427 183 47 25 chr4 130899550 130899669 -71428678 - AluSx SINE Alu -196 116 1 1975 149 0 3 chr4 130899943 130900251 -71428096 + AluSx SINE Alu 1 307 -5 21 0 0 0 chr4 130900762 130900783 -71427564 + AT_rich Low_complexity Low_complexity 1 21 0 500 173 0 3 chr4 130900860 130900948 -71427399 - MER58 DNA MER1_type 0 2420 256 2587 59 0 0 chr4 130900985 130901291 -71427056 - AluY SINE Alu -5 306 1 1501 184 39 14 chr4 130901337 130901620 -71426727 + AluJo SINE Alu 1 290 -22 31 0 0 0 chr4 130901623 130901654 -71426693 + AT_rich Low_complexity Low_complexity 1 31 0 203 270 32 0 chr4 130901702 130901765 -71426582 + MIR SINE MIR 32 96 -112 248 325 38 64 chr4 130901969 130902126 -71426221 + MIR SINE MIR 24 176 -86 248 204 56 0 chr4 130902463 130902517 -71425830 + L2 LINE L2 3210 3266 -6 496 264 130 54 chr4 130902969 130902980 -71425367 + MIR SINE MIR 6 15 -247 376 258 119 19 chr4 130902980 130903139 -71425208 + MER5B DNA MER1_type 1 175 -3 496 264 130 54 chr4 130903139 130903366 -71424981 + MIR SINE MIR 15 262 0 1712 179 30 0 chr4 130903756 130903937 -71424410 - AluJb SINE Alu -1 311 116 372 43 0 0 chr4 130903937 130903983 -71424364 + (TTCA)n Simple_repeat Simple_repeat 4 49 0 1712 179 30 0 chr4 130903983 130904103 -71424244 - AluJb SINE Alu -196 116 1 2835 7 0 0 chr4 130904536 130904843 -71423504 - AluYa5 SINE Alu -4 307 1 203 243 206 9 chr4 130905191 130905298 -71423049 - MIR SINE MIR 0 262 135 324 306 88 36 chr4 130905407 130905600 -71422747 - MIR SINE MIR -54 208 6 605 81 0 0 chr4 130905836 130905922 -71422425 + AluSg/x SINE Alu 218 303 -6 2029 142 0 7 chr4 130907724 130908020 -71420327 + AluJb SINE Alu 4 297 -15 27 62 0 0 chr4 130908159 130908207 -71420140 + AT_rich Low_complexity Low_complexity 1 48 0 242 211 77 0 chr4 130909167 130909219 -71419128 + MER20 DNA MER1_type 164 219 0 1823 131 62 3 chr4 130909817 130910107 -71418240 - AluJb SINE Alu -5 307 1 212 213 13 40 chr4 130911601 130911676 -71416671 + CT-rich Low_complexity Low_complexity 2 74 0 397 257 45 66 chr4 130911754 130912028 -71416319 - L1M4 LINE L1 -814 5332 5065 2098 138 0 0 chr4 130912028 130912325 -71416022 - AluSx SINE Alu -7 305 9 397 257 45 66 chr4 130912325 130912385 -71415962 - L1M4 LINE L1 -1081 5065 5005 797 245 5 16 chr4 130912454 130912646 -71415701 - MER3 DNA MER1_type -1 208 19 947 161 62 36 chr4 130914224 130914448 -71413899 + MER30 DNA MER1_type 1 230 0 205 189 0 0 chr4 130914991 130915028 -71413319 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 2167 79 13 36 chr4 130916013 130916316 -71412031 - AluY SINE Alu -15 296 1 23 0 0 0 chr4 130917273 130917296 -71411051 + AT_rich Low_complexity Low_complexity 1 23 0 2138 99 3 3 chr4 130917495 130917804 -71410543 + AluSg SINE Alu 1 309 0 2208 116 0 0 chr4 130917996 130918290 -71410057 + AluSg SINE Alu 1 294 -16 465 294 26 13 chr4 130918893 130919046 -71409301 - L2 LINE L2 -3138 176 22 21 36 0 0 chr4 130919275 130919303 -71409044 + AT_rich Low_complexity Low_complexity 1 28 0 2432 88 0 0 chr4 130919470 130919777 -71408570 - AluSg SINE Alu -3 307 1 1843 166 0 14 chr4 130921644 130921940 -71406407 + AluJb SINE Alu 1 292 -20 341 214 179 7 chr4 130922250 130922395 -71405952 - Charlie7 DNA MER1_type 0 2612 2443 1029 241 70 58 chr4 130922466 130922880 -71405467 - L1MD2 LINE L1 -13 6346 5928 945 171 0 0 chr4 130922884 130923030 -71405317 + FRAM SINE Alu 1 146 -30 2545 176 100 51 chr4 130923046 130923162 -71405185 - L1MD2 LINE L1 -422 5937 5828 918 163 6 12 chr4 130923162 130923322 -71405025 - FRAM SINE Alu -7 159 1 2545 176 100 51 chr4 130923322 130923333 -71405014 - L1MD2 LINE L1 -531 5828 5819 1359 108 169 27 chr4 130923333 130923593 -71404754 - AluSx SINE Alu -5 297 1 2545 176 100 51 chr4 130923593 130923798 -71404549 - L1MD2 LINE L1 -540 5819 5625 1291 231 93 50 chr4 130923798 130924282 -71404065 - MLT1D LTR MaLR 0 505 1 2545 176 100 51 chr4 130924282 130924677 -71403670 - L1MD2 LINE L1 -734 5625 5155 480 268 103 31 chr4 130924835 130925029 -71403318 - MER63A DNA MER1_type 0 210 3 204 328 170 35 chr4 130925253 130925393 -71402954 + MIR SINE MIR 3 123 -139 1121 197 46 65 chr4 130925393 130925744 -71402603 - MER2 DNA MER2_type 0 344 1 204 328 170 35 chr4 130925744 130925832 -71402515 + MIR SINE MIR 123 262 0 23 33 0 0 chr4 130926029 130926059 -71402288 + AT_rich Low_complexity Low_complexity 1 30 0 1586 134 27 104 chr4 130927297 130927633 -71400714 - AluJb SINE Alu -2 310 1 3148 220 19 21 chr4 130927633 130928433 -71399914 + L1M4 LINE L1 4322 5119 -1027 1202 201 112 8 chr4 130928821 130929070 -71399277 + MER21B LTR ERV1 1 275 -588 * 1513 199 101 21 chr4 130929067 130929443 -71398904 + MER21B LTR ERV1 447 852 -11 1074 147 24 0 chr4 130929603 130929773 -71398574 - FRAM SINE Alu -4 172 1 640 255 105 59 chr4 130929777 130930063 -71398284 + LTR33 LTR ERVL 153 451 -70 3953 136 60 23 chr4 130930119 130930892 -71397455 - L1MA8 LINE L1 -12 6279 5479 447 282 103 14 chr4 130932759 130932972 -71395375 + MIR SINE MIR 3 234 -28 1464 111 84 4 chr4 130934465 130934726 -71393621 + Tigger2 DNA MER2_type 1 282 -2436 1566 156 54 32 chr4 130934730 130935045 -71393302 + Tigger2 DNA MER2_type 2397 2718 0 327 227 45 34 chr4 130935443 130935531 -71392816 - MIR3 SINE MIR -9 199 111 1270 206 39 58 chr4 130936672 130936982 -71391365 - AluJo SINE Alu -6 306 3 21 0 0 0 chr4 130937074 130937095 -71391252 + AT_rich Low_complexity Low_complexity 1 21 0 453 36 0 0 chr4 130938655 130938710 -71389637 + (CATA)n Simple_repeat Simple_repeat 4 58 0 1687 197 59 92 chr4 130938951 130939524 -71388823 - MLT2B3 LTR ERVL 0 554 1 2262 82 0 10 chr4 130939890 130940184 -71388163 - AluSc SINE Alu -17 292 2 1953 136 0 19 chr4 130940346 130940656 -71387691 + AluSg SINE Alu 1 304 -6 725 156 94 141 chr4 130941063 130941179 -71387168 + MER33 DNA MER1_type 1 121 -2464 1895 152 3 26 chr4 130941179 130941481 -71386866 - AluJo SINE Alu -17 295 1 725 156 94 141 chr4 130941481 130941661 -71386686 + MER33 DNA MER1_type 121 282 -2303 2255 106 0 10 chr4 130941661 130941964 -71386383 + AluSq SINE Alu 1 300 -13 725 156 94 141 chr4 130941964 130942006 -71386341 + MER33 DNA MER1_type 282 324 0 4935 170 10 22 chr4 130942546 130943403 -71384944 - L1MB1 LINE L1 -4 6164 5320 1959 130 168 11 chr4 130943403 130943773 -71384574 - MSTA LTR MaLR 0 428 1 4935 170 10 22 chr4 130943773 130944184 -71384163 - L1MB1 LINE L1 -848 5320 4906 27756 34 1 6 chr4 130944230 130948408 -71379939 - L1PA4 LINE L1 0 6155 1990 319 318 45 8 chr4 130948424 130948556 -71379791 + L1MEc LINE L1 1440 1576 -4820 640 299 18 23 chr4 130948589 130948806 -71379541 - MIR SINE MIR -2 260 45 254 300 83 33 chr4 130948932 130949052 -71379295 - L2 LINE L2 -6 3307 3182 197 311 87 19 chr4 130949051 130949154 -71379193 + MIR SINE MIR 138 247 -15 * 286 362 10 55 chr4 130949218 130949417 -71378930 - L2 LINE L2 -179 3093 2904 369 314 200 16 chr4 130949640 130949885 -71378462 - L2 LINE L2 -798 2516 2227 14087 132 23 18 chr4 130949891 130952226 -71376121 - Tigger1 DNA MER2_type -3 2415 1 874 322 156 19 chr4 130952230 130952879 -71375468 - L2 LINE L2 -1093 2221 1484 276 30 0 0 chr4 130953294 130953327 -71375020 + (CA)n Simple_repeat Simple_repeat 2 34 0 213 39 0 0 chr4 130953742 130953768 -71374579 + (TG)n Simple_repeat Simple_repeat 2 27 0 470 355 10 5 chr4 130954291 130954491 -71373856 + MIR SINE MIR 47 247 -15 272 299 124 22 chr4 130954521 130954658 -71373689 + MIR3 SINE MIR 57 207 -1 811 234 22 16 chr4 130954805 130954989 -71373358 + MIR SINE MIR 22 206 -56 348 242 13 34 chr4 130955289 130955438 -71372909 + Charlie7 DNA MER1_type 2467 2612 0 23 33 0 0 chr4 130956491 130956521 -71371826 + AT_rich Low_complexity Low_complexity 1 30 0 199 224 0 41 chr4 130956634 130956683 -71371664 - MIR SINE MIR -65 143 97 294 331 69 29 chr4 130956756 130956931 -71371416 + MER5A DNA MER1_type 8 189 0 350 245 185 33 chr4 130956936 130957087 -71371260 - MER5B DNA MER1_type -3 175 2 775 258 81 10 chr4 130957103 130957301 -71371046 - MER58A DNA MER1_type -11 213 2 1937 134 37 13 chr4 130957424 130957722 -71370625 + AluSx SINE Alu 1 305 -7 36329 89 23 7 chr4 130957733 130963763 -71364584 + L1PA6 LINE L1 11 6134 -20 1367 171 78 25 chr4 130963780 130964061 -71364286 + AluJb SINE Alu 3 298 -14 23 54 0 0 chr4 130965315 130965352 -71362995 + AT_rich Low_complexity Low_complexity 1 37 0 286 294 0 15 chr4 130965886 130965954 -71362393 + L2 LINE L2 3201 3267 -5 225 159 0 0 chr4 130967226 130967270 -71361077 + (TG)n Simple_repeat Simple_repeat 2 45 0 1412 153 84 22 chr4 130967459 130967608 -71360739 - AluJb SINE Alu -21 291 153 261 0 0 0 chr4 130967608 130967637 -71360710 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1412 153 84 22 chr4 130967637 130967761 -71360586 - AluJb SINE Alu -159 153 1 182 224 0 61 chr4 130968969 130969018 -71359329 - L2 LINE L2 -16 3256 3211 213 368 21 11 chr4 130969049 130969144 -71359203 - MIR SINE MIR -160 102 7 356 366 6 12 chr4 130969172 130969333 -71359014 - L2 LINE L2 -210 3062 2903 412 260 87 40 chr4 130969665 130969815 -71358532 - L2 LINE L2 -6 3307 3151 316 164 0 16 chr4 130970641 130970702 -71357645 - MIR SINE MIR -61 147 88 286 232 72 0 chr4 130971317 130971386 -71356961 + L2 LINE L2 3240 3313 0 275 312 97 26 chr4 130971523 130971677 -71356670 + MIR SINE MIR 95 259 -3 210 91 0 0 chr4 130972360 130972393 -71355954 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2650 225 88 31 chr4 130972669 130973089 -71355258 - L1ME2 LINE L1 -19 6145 5751 1695 181 0 33 chr4 130973089 130973232 -71355115 + AluJb SINE Alu 1 147 -165 2282 90 0 7 chr4 130973232 130973533 -71354814 + AluSq SINE Alu 1 299 -14 1695 181 0 33 chr4 130973533 130973693 -71354654 + AluJb SINE Alu 147 294 -18 2650 225 88 31 chr4 130973693 130974557 -71353790 - L1ME2 LINE L1 -413 5751 4696 439 174 55 0 chr4 130974625 130974734 -71353613 - L1MB8 LINE L1 -1 6177 6063 211 370 33 0 chr4 130974734 130974826 -71353521 + L2 LINE L2 3178 3272 0 1581 187 0 4 chr4 130975003 130975270 -71353077 - AluJb SINE Alu -20 292 27 1863 91 109 14 chr4 130975270 130975545 -71352802 + AluSx SINE Alu 1 301 -11 275 154 0 0 chr4 130975549 130975588 -71352759 - AluJb SINE Alu -260 39 1 225 65 0 0 chr4 130975742 130975773 -71352574 + (T)n Simple_repeat Simple_repeat 1 31 0 461 86 0 0 chr4 130975781 130975851 -71352496 - Alu SINE Alu -248 70 1 463 205 0 0 chr4 130977280 130977358 -71350989 + Tigger5 DNA MER2_type 2 79 -2244 340 191 29 0 chr4 130977360 130977428 -71350919 - Tigger5 DNA MER2_type -6 2317 2248 487 165 13 0 chr4 130977448 130977527 -71350820 + Tigger5 DNA MER2_type 2244 2323 0 180 0 0 0 chr4 130978162 130978182 -71350165 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 26 50 0 0 chr4 130978564 130978604 -71349743 + AT_rich Low_complexity Low_complexity 1 40 0 2477 76 0 0 chr4 130978774 130979078 -71349269 - AluSq SINE Alu -5 308 5 1861 136 116 0 chr4 130980773 130981075 -71347272 + MER1B DNA MER1_type 1 337 0 1216 188 130 26 chr4 130981246 130981554 -71346793 - MER2 DNA MER2_type -3 341 2 1608 172 38 24 chr4 130981700 130981991 -71346356 - AluJo SINE Alu -17 295 1 346 344 0 0 chr4 130982280 130982376 -71345971 - MIR SINE MIR -77 131 36 196 309 18 0 chr4 130982580 130982635 -71345712 + L2 LINE L2 3172 3227 -86 555 319 26 31 chr4 130983109 130983300 -71345047 - MER91A DNA MER1_type 0 196 7 5927 75 8 2 chr4 130983492 130984284 -71344063 + L1PB1 LINE L1 5355 6150 -1 391 294 187 33 chr4 130986126 130986340 -71342007 + MIR SINE MIR 15 261 -1 471 257 181 26 chr4 130987981 130988441 -71339906 + HAL1 LINE L1 786 1360 -1147 1232 235 79 9 chr4 130988450 130988790 -71339557 + HAL1 LINE L1 1467 1830 -677 2142 95 3 3 chr4 130989736 130990031 -71338316 - AluSc SINE Alu -14 295 1 306 312 87 82 chr4 130992589 130993038 -71335309 - L2 LINE L2 -1409 1905 1455 206 218 36 18 chr4 130993235 130993290 -71335057 - L2 LINE L2 -958 2356 2301 2005 117 84 3 chr4 130993490 130993824 -71334523 + MER46B DNA MER2_type 1 236 0 215 220 20 0 chr4 130994186 130994236 -71334111 + L2 LINE L2 3261 3311 -2 12176 187 19 3 chr4 130995404 130998719 -71329628 - L1PA15 LINE L1 -3 6162 2804 27 49 0 0 chr4 130998728 130998769 -71329578 + AT_rich Low_complexity Low_complexity 1 41 0 2222 95 20 0 chr4 130999054 130999348 -71328999 + AluSx SINE Alu 1 300 -12 467 308 141 5 chr4 130999392 130999577 -71328770 + MIR SINE MIR 3 212 -50 410 242 96 79 chr4 131000004 131000201 -71328146 + MIR SINE MIR 17 214 -48 2128 184 52 50 chr4 131000306 131000807 -71327540 - MLT1D LTR MaLR -3 502 1 221 175 0 0 chr4 131000914 131000954 -71327393 + T-rich Low_complexity Low_complexity 3 42 0 231 208 115 83 chr4 131001450 131001546 -71326801 + MIR3 SINE MIR 95 193 -15 1986 159 14 3 chr4 131001598 131001951 -71326396 + L1MC1 LINE L1 5733 6089 -244 892 167 23 17 chr4 131001954 131002128 -71326219 + L1MC1 LINE L1 6159 6333 0 253 222 12 49 chr4 131002694 131002775 -71325572 + GA-rich Low_complexity Low_complexity 3 80 0 207 0 0 0 chr4 131003279 131003302 -71325045 + (GA)n Simple_repeat Simple_repeat 2 24 0 1655 207 24 0 chr4 131003490 131003823 -71324524 + MER58B DNA MER1_type 1 341 0 398 300 48 43 chr4 131005617 131005827 -71322520 + MIR SINE MIR 8 218 -44 22 0 0 0 chr4 131006228 131006250 -71322097 + AT_rich Low_complexity Low_complexity 1 22 0 1057 281 120 0 chr4 131007535 131007944 -71320403 - L2 LINE L2 -1 3312 2855 854 289 254 18 chr4 131007930 131008429 -71319918 - L2 LINE L2 -1277 2037 1421 * 346 296 102 56 chr4 131008496 131008800 -71319547 - L3 LINE CR1 -141 1436 1119 5378 160 8 23 chr4 131008938 131009785 -71318562 - L1PB3 LINE L1 0 6154 5326 1007 134 73 0 chr4 131009785 131009949 -71318398 - L1PA10 LINE L1 -10 6158 5983 5378 160 8 23 chr4 131009949 131010398 -71317949 - L1PB3 LINE L1 -828 5326 4872 2352 120 6 22 chr4 131010424 131010783 -71317564 - THE1B LTR MaLR 0 364 12 4737 200 56 38 chr4 131010787 131013313 -71315034 - L1PBb LINE L1 -3569 2634 11 904 350 36 31 chr4 131013288 131013983 -71314364 - L1M2 LINE L1 -5224 1625 11 * 353 318 43 12 chr4 131013980 131014183 -71314164 - L1PBa LINE L1 -5419 1430 1268 * 228 226 0 194 chr4 131014156 131014280 -71314067 - L1PBb LINE L1 -5347 857 758 * 193 308 43 43 chr4 131014642 131014759 -71313588 - L2 LINE L2 -1058 2256 2140 362 222 148 79 chr4 131015352 131015499 -71312848 + L1MC5 LINE L1 5719 5883 -1925 1336 134 41 166 chr4 131015499 131015843 -71312504 + AluJb SINE Alu 2 302 0 362 222 148 79 chr4 131015843 131015884 -71312463 + L1MC5 LINE L1 5883 5920 -1888 1988 222 97 35 chr4 131015907 131016681 -71311666 + L1MC5 LINE L1 7104 7925 -36 2420 85 7 0 chr4 131017360 131017667 -71310680 + AluY SINE Alu 1 309 -2 279 173 0 0 chr4 131018001 131018053 -71310294 + (CA)n Simple_repeat Simple_repeat 2 53 0 327 25 0 0 chr4 131019038 131019078 -71309269 + (TG)n Simple_repeat Simple_repeat 1 40 0 22 0 0 0 chr4 131021340 131021362 -71306985 + AT_rich Low_complexity Low_complexity 1 22 0 347 206 206 0 chr4 131022831 131022923 -71305424 + L2 LINE L2 3202 3312 -1 22 0 0 0 chr4 131023165 131023187 -71305160 + AT_rich Low_complexity Low_complexity 1 22 0 627 149 0 11 chr4 131023191 131023285 -71305062 + FLAM_A SINE Alu 32 124 -18 1701 163 23 10 chr4 131023404 131023704 -71304643 + AluJb SINE Alu 1 304 -8 1671 107 0 5 chr4 131026471 131026695 -71301652 - AluSq SINE Alu -8 305 83 738 220 8 0 chr4 131027093 131027225 -71301122 - FLAM_A SINE Alu 0 133 1 237 83 0 0 chr4 131027296 131027332 -71301015 + (CA)n Simple_repeat Simple_repeat 2 37 0 1973 152 67 15 chr4 131027610 131027940 -71300407 + MER7A DNA MER2_type 1 345 -1 2463 116 3 29 chr4 131028274 131028619 -71299728 + MER1B DNA MER1_type 1 336 -1 1910 208 28 3 chr4 131029113 131029469 -71298878 - MLT1A1 LTR MaLR 0 365 1 308 232 96 24 chr4 131029469 131029559 -71298788 + MER103 DNA DNA 31 134 -32 1278 143 124 0 chr4 131029559 131029769 -71298578 + MER46A DNA MER2_type 1 236 0 308 232 96 24 chr4 131029769 131029803 -71298544 + MER103 DNA DNA 134 164 -2 242 325 56 24 chr4 131030523 131030649 -71297698 + L2 LINE L2 3143 3272 0 2430 84 0 3 chr4 131031266 131031576 -71296771 + AluSc SINE Alu 1 309 0 198 77 0 0 chr4 131032123 131032149 -71296198 + L2 LINE L2 3272 3297 -16 2246 123 3 0 chr4 131034669 131034971 -71293376 - AluSx SINE Alu -7 305 3 2227 74 0 45 chr4 131035102 131035411 -71292936 - AluY SINE Alu -16 295 1 1730 169 10 17 chr4 131035701 131035997 -71292350 - AluJo SINE Alu -18 294 1 943 220 45 0 chr4 131036142 131036342 -71292005 - MER3 DNA MER1_type 0 209 1 598 284 74 106 chr4 131036466 131036861 -71291486 + L1MEd LINE L1 96 465 -5654 2563 57 0 3 chr4 131036861 131037162 -71291185 + AluY SINE Alu 1 300 -11 598 284 74 106 chr4 131037162 131037389 -71290958 + L1MEd LINE L1 465 698 -5421 783 232 130 19 chr4 131037393 131037718 -71290629 + L1ME3A LINE L1 5502 5855 -314 872 169 0 22 chr4 131038559 131038695 -71289652 + FLAM_A SINE Alu 1 133 0 24 77 0 0 chr4 131039064 131039116 -71289231 + AT_rich Low_complexity Low_complexity 1 52 0 527 282 115 12 chr4 131040414 131040666 -71287681 + L1MC4a LINE L1 5592 5869 -1939 253 286 139 20 chr4 131040865 131041159 -71287188 + L1M4 LINE L1 2841 3169 -2977 2199 175 64 58 chr4 131041223 131041725 -71286622 + MLT1D LTR MaLR 1 505 0 4569 179 47 13 chr4 131041751 131042735 -71285612 + L1PB4 LINE L1 4314 5330 -816 3359 75 22 201 chr4 131042739 131042971 -71285376 + L1PB1 LINE L1 5542 5814 -337 249 152 0 0 chr4 131042971 131043017 -71285330 + LTR66 LTR ERVL 394 439 -171 3359 75 22 201 chr4 131043017 131043481 -71284866 + L1PB1 LINE L1 5814 6150 -1 4370 131 81 25 chr4 131043485 131044296 -71284051 + L1PB4 LINE L1 5298 6154 -2 2289 108 0 9 chr4 131044384 131044699 -71283648 - AluSx SINE Alu 0 312 1 697 226 129 85 chr4 131046099 131046417 -71281930 + LTR50 LTR ERVL 1 332 -463 386 283 14 14 chr4 131046464 131046609 -71281738 + ERVL LTR ERVL 1026 1170 -4594 413 269 96 39 chr4 131046615 131046771 -71281576 + L2 LINE L2 3149 3313 0 1097 79 13 33 chr4 131046927 131047079 -71281268 + L1PA8 LINE L1 6021 6169 -3 531 290 232 0 chr4 131047644 131047916 -71280431 - L2 LINE L2 -1767 1547 1213 8229 134 62 5 chr4 131048935 131050247 -71278100 + Tigger1 DNA MER2_type 1 1387 -1031 2182 111 3 23 chr4 131050256 131050582 -71277765 - AluSg SINE Alu 0 320 1 32277 111 9 62 chr4 131050582 131057070 -71271277 - L1PA7 LINE L1 -8 6146 12 6793 126 12 18 chr4 131057080 131057949 -71270398 + Tigger1 DNA MER2_type 1378 2241 -177 2130 113 17 3 chr4 131057949 131058249 -71270098 + AluSx SINE Alu 1 304 -8 6793 126 12 18 chr4 131058249 131058425 -71269922 + Tigger1 DNA MER2_type 2241 2417 -1 194 241 93 0 chr4 131058617 131058671 -71269676 + MIR SINE MIR 157 215 -47 198 0 0 0 chr4 131059310 131059332 -71269015 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 267 223 175 10 chr4 131060741 131060844 -71267503 + L1ME3A LINE L1 5817 5936 -234 304 118 0 33 chr4 131061149 131061216 -71267131 - MLT1C LTR MaLR 0 467 329 1925 103 8 0 chr4 131061723 131061976 -71266371 - AluSg SINE Alu -16 294 40 1718 176 3 23 chr4 131062367 131062673 -71265674 + AluJo SINE Alu 1 300 -12 429 355 37 18 chr4 131063246 131063482 -71264865 + MIR SINE MIR 2 243 -19 666 323 16 28 chr4 131064113 131064362 -71263985 - MIR SINE MIR -5 257 14 433 267 67 15 chr4 131064366 131064501 -71263846 + MIR SINE MIR 49 190 -72 2211 163 68 17 chr4 131066816 131067227 -71261120 + MSTB1 LTR MaLR 1 432 0 1895 136 32 26 chr4 131067814 131068124 -71260223 + AluJo SINE Alu 1 312 0 4171 143 36 8 chr4 131069058 131069724 -71258623 - LTR62 LTR ERVK -33 686 2 240 324 158 29 chr4 131069896 131070137 -71258210 + L2 LINE L2 3031 3302 -11 2179 95 7 10 chr4 131071076 131071414 -71256933 + AluSq SINE Alu 1 313 0 330 223 41 15 chr4 131071807 131071959 -71256388 + MER63 DNA MER1_type 3 782 -54 306 0 0 0 chr4 131072100 131072134 -71256213 + (A)n Simple_repeat Simple_repeat 1 34 0 523 286 51 10 chr4 131072977 131073173 -71255174 - L1ME3A LINE L1 -5 6165 5962 196 161 0 0 chr4 131074199 131074230 -71254117 + L2 LINE L2 2498 2528 -786 404 294 14 41 chr4 131075051 131075197 -71253150 + MIR SINE MIR 65 206 -56 913 178 0 28 chr4 131075535 131075715 -71252632 - FRAM SINE Alu 0 40 1 1135 245 287 11 chr4 131075884 131076341 -71252006 + MLT1E LTR MaLR 3 585 -8 1889 114 44 0 chr4 131076598 131076897 -71251450 - AluSx SINE Alu 0 311 1 2147 91 11 0 chr4 131077598 131077883 -71250464 - AluSp SINE Alu -5 308 21 1548 188 17 14 chr4 131077885 131078177 -71250170 - AluJo SINE Alu -15 297 5 276 167 0 100 chr4 131078187 131078277 -71250070 + L2 LINE L2 3159 3239 -74 264 339 9 9 chr4 131078662 131078771 -71249576 + MLT1K LTR MaLR 122 230 -358 356 172 0 0 chr4 131078853 131078911 -71249436 + MLT1K LTR MaLR 509 566 -22 281 292 154 15 chr4 131079301 131079431 -71248916 + MIR SINE MIR 38 185 -77 758 186 0 16 chr4 131080523 131080647 -71247700 - FLAM_A SINE Alu -11 122 1 2327 107 0 10 chr4 131080971 131081280 -71247067 + AluSp SINE Alu 1 306 -7 1276 132 146 12 chr4 131082168 131082548 -71245799 + MLT2B1 LTR ERVL 1 520 0 458 228 116 93 chr4 131083630 131083889 -71244458 + Charlie8 DNA MER1_type 157 421 -1996 2070 117 16 3 chr4 131083990 131084298 -71244049 - AluSp SINE Alu -1 312 1 1017 60 30 0 chr4 131085387 131085520 -71242827 - L1PA13 LINE L1 -1 6162 6026 985 240 101 36 chr4 131086071 131086388 -71241959 + MLT1I LTR MaLR 91 409 0 524 128 26 0 chr4 131086788 131086866 -71241481 + FLAM_A SINE Alu 46 125 -17 1559 268 83 38 chr4 131087032 131087585 -71240762 + MLT1E LTR MaLR 8 585 -8 622 315 96 83 chr4 131087594 131088037 -71240310 + L1MC4a LINE L1 2205 2641 -3505 2363 82 0 3 chr4 131088037 131088330 -71240017 + AluY SINE Alu 1 292 -19 622 315 96 83 chr4 131088330 131088430 -71239917 + L1MC4a LINE L1 2641 2738 -3408 1995 109 0 35 chr4 131088430 131088742 -71239605 + AluSg SINE Alu 1 301 -9 622 315 96 83 chr4 131088742 131088972 -71239375 + L1MC4a LINE L1 2738 2964 -3182 2380 72 0 3 chr4 131088972 131089264 -71239083 - AluY SINE Alu -20 291 1 622 315 96 83 chr4 131089264 131089471 -71238876 + L1MC4a LINE L1 2964 3199 -2947 1432 269 74 20 chr4 131089492 131090101 -71238246 + L1MC4a LINE L1 5318 5959 -1849 1551 193 18 82 chr4 131090628 131091028 -71237319 + MLT1A2 LTR MaLR 1 374 0 2425 169 49 5 chr4 131091198 131091606 -71236741 + MSTB LTR MaLR 1 426 0 260 263 102 42 chr4 131091680 131091798 -71236549 + MER5A DNA MER1_type 8 132 -57 217 211 125 87 chr4 131091706 131091810 -71236537 - MER5A DNA MER1_type -22 167 60 * 2049 111 0 67 chr4 131092022 131092337 -71236010 + AluSx SINE Alu 1 294 -18 1024 152 48 0 chr4 131092818 131092983 -71235364 + AluJb SINE Alu 138 310 -2 765 164 0 0 chr4 131092986 131093126 -71235221 + GA-rich Low_complexity Low_complexity 2 141 0 1540 113 30 9 chr4 131093186 131093416 -71234931 + AluY SINE Alu 60 294 -17 2349 124 135 8 chr4 131093453 131093832 -71234515 + MSTA LTR MaLR 1 427 -1 245 320 60 20 chr4 131094027 131094127 -71234220 + MIR3 SINE MIR 15 118 -90 410 282 146 56 chr4 131094140 131094353 -71233994 - MIR SINE MIR -13 249 18 190 317 106 41 chr4 131094319 131094442 -71233905 + MIR3 SINE MIR 59 189 -19 * 5552 218 26 21 chr4 131094451 131096530 -71231817 - L1MD2 LINE L1 -474 5885 3796 1523 180 57 130 chr4 131096635 131096950 -71231397 - MLT1D LTR MaLR 0 505 245 2264 112 0 0 chr4 131096950 131097244 -71231103 - AluSg SINE Alu -16 294 1 1523 180 57 130 chr4 131097244 131097473 -71230874 - MLT1D LTR MaLR -260 245 1 259 213 0 0 chr4 131097516 131097563 -71230784 - L2 LINE L2 -16 3297 3251 414 256 51 36 chr4 131097912 131098049 -71230298 + L2 LINE L2 3174 3312 -1 21 0 0 0 chr4 131098243 131098264 -71230083 + AT_rich Low_complexity Low_complexity 1 21 0 3066 147 82 18 chr4 131098713 131099272 -71229075 + LTR49 LTR ERV1 1 595 0 339 266 186 8 chr4 131100583 131100707 -71227640 - L2 LINE L2 -11 3261 3116 444 314 228 32 chr4 131100775 131101437 -71226910 - L2 LINE L2 -358 2956 2165 358 250 0 0 chr4 131101462 131101538 -71226809 - MER94 DNA DNA -5 129 54 2457 157 40 45 chr4 131101539 131101965 -71226382 + MSTB LTR MaLR 1 424 -2 1209 124 0 0 chr4 131101965 131102143 -71226204 + MSTB-int LTR MaLR 1 178 -1473 2472 67 0 0 chr4 131102351 131102648 -71225699 + AluY SINE Alu 1 297 -14 21 71 0 0 chr4 131102669 131102711 -71225636 + AT_rich Low_complexity Low_complexity 1 42 0 1562 158 64 4 chr4 131103100 131103366 -71224981 - AluJb SINE Alu -30 282 1 2307 116 0 0 chr4 131104129 131104440 -71223907 + AluSx SINE Alu 1 311 -1 2295 101 0 19 chr4 131104623 131104941 -71223406 - AluSx SINE Alu 0 312 1 2774 94 16 11 chr4 131105236 131105448 -71222899 - THE1C LTR MaLR 0 375 159 2285 114 0 0 chr4 131105448 131105755 -71222592 + AluSg SINE Alu 1 307 -3 2774 94 16 11 chr4 131105755 131105915 -71222432 - THE1C LTR MaLR -216 159 1 335 273 159 15 chr4 131106358 131106490 -71221857 + MIR SINE MIR 45 195 -67 2950 188 58 60 chr4 131106496 131106932 -71221415 + HsTC2a DNA MER2_type 3 439 -1461 2256 112 0 0 chr4 131106932 131107236 -71221111 + AluSx SINE Alu 2 305 -7 2950 188 58 60 chr4 131107236 131107538 -71220809 + HsTC2a DNA MER2_type 439 740 -4 2228 108 10 0 chr4 131107547 131107852 -71220495 + AluSg SINE Alu 1 308 -2 208 303 132 0 chr4 131108233 131108309 -71220038 + L2 LINE L2 3225 3310 -3 922 265 109 36 chr4 131109197 131109208 -71219139 + L2 LINE L2 2678 2687 -626 2253 84 3 27 chr4 131109208 131109505 -71218842 - AluSx SINE Alu -22 290 1 922 265 109 36 chr4 131109505 131110045 -71218302 + L2 LINE L2 2687 3313 0 280 318 40 24 chr4 131110643 131110769 -71217578 + MARNA DNA Mariner 435 562 -24 354 322 116 7 chr4 131111781 131111927 -71216420 - MIR SINE MIR -100 162 1 2414 42 3 23 chr4 131112146 131112452 -71215895 - AluY SINE Alu -10 301 2 2337 97 3 0 chr4 131112484 131112835 -71215512 - AluSx SINE Alu 0 352 1 2177 96 20 3 chr4 131114197 131114490 -71213857 - AluSx SINE Alu -14 298 1 180 152 0 0 chr4 131117813 131117846 -71210501 + A-rich Low_complexity Low_complexity 1 33 0 331 246 145 120 chr4 131118246 131118737 -71209610 - L1M2 LINE L1 -5815 1034 532 186 43 0 0 chr4 131118911 131118934 -71209413 + (TG)n Simple_repeat Simple_repeat 2 24 0 2180 89 3 0 chr4 131119076 131119368 -71208979 + AluSx SINE Alu 1 293 -19 252 0 0 0 chr4 131122586 131122614 -71205733 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 530 92 40 0 chr4 131123888 131123964 -71204383 + MADE1 DNA Mariner 1 79 -1 261 291 19 39 chr4 131126629 131126732 -71201615 + MER5B DNA MER1_type 48 148 -30 1229 199 55 39 chr4 131126871 131127178 -71201169 - AluJo SINE Alu 0 312 1 378 216 95 52 chr4 131127845 131127961 -71200386 - MIR3 SINE MIR -1 207 87 2356 100 0 0 chr4 131128006 131128316 -71200031 + AluSg SINE Alu 1 310 0 502 221 47 111 chr4 131128553 131128743 -71199604 + MER5B DNA MER1_type 1 178 0 1346 169 60 90 chr4 131130276 131130577 -71197770 - AluJo SINE Alu -20 292 1 458 122 276 0 chr4 131130744 131130842 -71197505 + AluJ SINE Alu 1 125 -177 2173 117 20 0 chr4 131130849 131131148 -71197199 - AluSx SINE Alu -7 305 1 2342 80 3 10 chr4 131131274 131131573 -71196774 + AluSg SINE Alu 1 297 -13 1040 164 0 6 chr4 131131607 131131778 -71196569 + AluJ SINE Alu 129 298 -14 181 259 74 62 chr4 131132496 131132577 -71195770 + L2 LINE L2 3221 3302 -11 214 329 141 52 chr4 131132828 131133041 -71195306 - L2 LINE L2 -190 3082 2851 2008 113 55 0 chr4 131133719 131133994 -71194353 + AluSx SINE Alu 5 294 -18 2276 68 44 0 chr4 131134119 131134415 -71193932 + AluY SINE Alu 1 309 -2 2185 53 0 8 chr4 131134528 131134812 -71193535 + AluY SINE Alu 22 303 0 1216 123 0 0 chr4 131134812 131134982 -71193365 + AluSp SINE Alu 136 305 -8 192 333 0 0 chr4 131134984 131135047 -71193300 - MIR SINE MIR -81 127 65 2315 77 7 3 chr4 131135255 131135554 -71192793 - AluSp SINE Alu -13 300 1 240 218 154 51 chr4 131136933 131137011 -71191336 + L2 LINE L2 3177 3262 -10 21 36 0 0 chr4 131137492 131137520 -71190827 + AT_rich Low_complexity Low_complexity 1 28 0 239 273 215 8 chr4 131137843 131137964 -71190383 - MIR3 SINE MIR -62 146 1 2223 82 0 57 chr4 131139216 131139531 -71188816 + AluSq SINE Alu 1 297 -16 1932 94 80 0 chr4 131139918 131140194 -71188153 + AluSc SINE Alu 1 298 -11 277 212 101 30 chr4 131140629 131140728 -71187619 - L1ME4a LINE L1 -2 6119 6014 2278 119 0 0 chr4 131140798 131141108 -71187239 - AluSg SINE Alu 0 310 1 202 200 250 33 chr4 131143268 131143328 -71185019 - L2 LINE L2 -48 3224 3152 683 283 68 0 chr4 131143826 131144017 -71184330 - MIR SINE MIR -35 227 24 1493 204 3 32 chr4 131144523 131144864 -71183483 - AluJo SINE Alu 0 312 1 331 288 59 42 chr4 131144996 131145114 -71183233 + L2 LINE L2 3190 3309 -4 7391 127 14 21 chr4 131145231 131146379 -71181968 - L1MA3 LINE L1 0 6305 5150 2363 51 27 7 chr4 131146379 131146672 -71181675 - AluY SINE Alu -12 299 1 7391 127 14 21 chr4 131146672 131147366 -71180981 - L1MA3 LINE L1 -1155 5150 4478 2186 66 45 14 chr4 131147366 131147652 -71180695 - AluY SINE Alu -16 295 1 7391 127 14 21 chr4 131147652 131147696 -71180651 - L1MA3 LINE L1 -1827 4478 4435 190 180 20 60 chr4 131147707 131147757 -71180590 - MER5B DNA MER1_type -121 57 10 198 0 0 0 chr4 131148178 131148200 -71180147 + (T)n Simple_repeat Simple_repeat 1 22 0 2251 84 3 30 chr4 131148865 131149163 -71179184 + AluSp SINE Alu 6 295 -18 347 224 30 75 chr4 131149293 131149427 -71178920 - L2 LINE L2 -52 3261 3134 2568 103 55 9 chr4 131149524 131149872 -71178475 - THE1B LTR MaLR 0 364 1 2469 146 32 7 chr4 131149940 131150350 -71177997 - MSTB LTR MaLR 0 426 7 2297 102 3 3 chr4 131151366 131151670 -71176677 - AluSp SINE Alu -9 304 1 1116 212 74 62 chr4 131152425 131152570 -71175777 + MLT1B LTR MaLR 1 143 -247 9183 61 2 3 chr4 131152570 131153642 -71174705 + MER11C LTR ERVK 1 1071 0 1116 212 74 62 chr4 131153642 131153934 -71174413 + MLT1B LTR MaLR 143 390 0 523 275 19 0 chr4 131154083 131154243 -71174104 - MER52A LTR ERV1 0 1755 1593 5046 103 20 138 chr4 131154354 131155286 -71173061 - LTR12 LTR ERV1 0 826 5 2244 179 30 35 chr4 131155302 131155907 -71172440 - pTR5 LTR ERV1 -1094 1344 743 889 233 26 51 chr4 131156092 131156530 -71171817 - MER52A LTR ERV1 -522 1233 666 1323 165 4 39 chr4 131157091 131157346 -71171001 + AluJb SINE Alu 64 309 -3 1246 109 0 16 chr4 131158827 131159011 -71169336 - AluY SINE Alu -1 310 130 2183 107 7 0 chr4 131159196 131159486 -71168861 + AluSx SINE Alu 1 292 -20 2412 62 0 0 chr4 131159587 131159879 -71168468 + AluY SINE Alu 1 292 -19 1721 171 0 0 chr4 131159980 131160254 -71168093 + AluSx SINE Alu 24 297 -15 1480 133 0 133 chr4 131160924 131161240 -71167107 + AluJo SINE Alu 29 302 -10 362 97 48 0 chr4 131161243 131161305 -71167042 + G-rich Low_complexity Low_complexity 5 69 0 189 0 0 0 chr4 131161478 131161499 -71166848 + (A)n Simple_repeat Simple_repeat 1 21 0 279 0 0 0 chr4 131161753 131161784 -71166563 + (A)n Simple_repeat Simple_repeat 1 31 0 2291 85 24 0 chr4 131162137 131162430 -71165917 - AluSp SINE Alu -13 300 1 21 0 0 0 chr4 131162496 131162517 -71165830 + AT_rich Low_complexity Low_complexity 1 21 0 308 283 41 41 chr4 131162939 131163084 -71165263 + MLT1K LTR MaLR 190 334 -254 287 351 30 2 chr4 131163303 131163441 -71164906 - MIR SINE MIR -61 147 15 4172 149 38 37 chr4 131163466 131164230 -71164117 - L1MB3 LINE L1 -2 6181 5417 35 0 0 0 chr4 131164415 131164450 -71163897 + AT_rich Low_complexity Low_complexity 1 35 0 2246 91 0 0 chr4 131164450 131164735 -71163612 - AluY SINE Alu -26 285 1 279 0 0 0 chr4 131165559 131165590 -71162757 + (A)n Simple_repeat Simple_repeat 1 31 0 1943 148 38 0 chr4 131167195 131167486 -71160861 + AluJb SINE Alu 1 302 -10 871 73 40 16 chr4 131167489 131167613 -71160734 + AluSg/x SINE Alu 179 305 -5 27 0 0 0 chr4 131167855 131167882 -71160465 + AT_rich Low_complexity Low_complexity 1 27 0 2193 91 37 13 chr4 131168350 131168648 -71159699 + AluSq SINE Alu 1 305 -8 189 0 0 0 chr4 131169017 131169038 -71159309 + (T)n Simple_repeat Simple_repeat 1 21 0 362 97 48 0 chr4 131169211 131169273 -71159074 + C-rich Low_complexity Low_complexity 5 69 0 1037 197 15 15 chr4 131169276 131169474 -71158873 - AluJ SINE Alu -10 302 105 659 155 0 10 chr4 131169489 131169592 -71158755 - AluJ SINE Alu -182 130 29 1487 140 5 0 chr4 131169829 131170043 -71158304 + AluSx SINE Alu 5 219 -93 25 0 0 0 chr4 131170059 131170084 -71158263 + AT_rich Low_complexity Low_complexity 1 25 0 310 333 19 43 chr4 131171147 131171309 -71157038 + L2 LINE L2 3156 3313 0 243 0 0 0 chr4 131171453 131171480 -71156867 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1627 179 18 7 chr4 131171482 131171761 -71156586 - AluJo SINE Alu -30 282 1 1606 174 37 7 chr4 131172709 131172979 -71155368 + AluJb SINE Alu 13 290 -22 247 303 141 20 chr4 131172981 131173080 -71155267 - L2 LINE L2 -1 3312 3202 21 71 0 0 chr4 131173488 131173530 -71154817 + AT_rich Low_complexity Low_complexity 1 42 0 636 318 81 35 chr4 131175217 131175623 -71152724 + MER115 DNA AcHobo 1 425 -268 264 345 0 0 chr4 131175678 131175762 -71152585 + MIR SINE MIR 159 242 -20 1632 176 55 3 chr4 131176431 131176721 -71151626 + AluJb SINE Alu 3 307 -5 312 241 12 0 chr4 131176764 131176847 -71151500 - HsTC2 DNA Tc2 -1812 86 3 2170 125 0 0 chr4 131177112 131177409 -71150938 - AluSx SINE Alu -15 297 1 305 196 0 28 chr4 131177846 131177907 -71150440 + (TAA)n Simple_repeat Simple_repeat 3 64 -42 2031 122 7 3 chr4 131177907 131178193 -71150154 + AluSx SINE Alu 1 287 -25 305 196 0 28 chr4 131178193 131178217 -71150130 + (TAA)n Simple_repeat Simple_repeat 64 87 -19 2254 95 0 3 chr4 131178217 131178511 -71149836 + AluY SINE Alu 1 293 -18 305 196 0 28 chr4 131178511 131178531 -71149816 + (TAA)n Simple_repeat Simple_repeat 87 106 0 29 28 0 0 chr4 131178675 131178711 -71149636 + AT_rich Low_complexity Low_complexity 1 36 0 369 301 7 13 chr4 131178731 131178884 -71149463 + L1ME LINE L1 4507 4658 -1488 21 0 0 0 chr4 131179062 131179083 -71149264 + AT_rich Low_complexity Low_complexity 1 21 0 2283 108 0 3 chr4 131179093 131179398 -71148949 + AluSq SINE Alu 3 306 -7 24 32 0 0 chr4 131179481 131179512 -71148835 + AT_rich Low_complexity Low_complexity 1 31 0 1656 192 3 22 chr4 131179556 131179869 -71148478 - AluJo SINE Alu -4 308 2 230 256 145 17 chr4 131180212 131180329 -71148018 + L1ME LINE L1 5540 5671 -450 246 200 0 0 chr4 131180485 131180545 -71147802 + L1ME4a LINE L1 6062 6121 0 2173 121 0 0 chr4 131180575 131180865 -71147482 + AluSx SINE Alu 1 290 -22 292 224 47 47 chr4 131181478 131181563 -71146784 + Tigger3(Golem) DNA MER2_type 1 85 -2944 * 5628 92 35 5 chr4 131181552 131182411 -71145936 + Tigger3(Golem) DNA MER2_type 1856 2740 -289 1217 160 94 84 chr4 131182413 131182700 -71145647 - AluJb SINE Alu -12 300 11 2387 78 3 16 chr4 131182723 131183032 -71145315 - AluSc SINE Alu -4 305 1 1164 180 81 11 chr4 131183068 131183329 -71145018 + Tigger3(Golem) DNA MER2_type 2749 3027 -2 1789 173 0 20 chr4 131184276 131184582 -71143765 - AluJb SINE Alu -12 300 1 258 32 0 0 chr4 131184985 131185016 -71143331 + (TG)n Simple_repeat Simple_repeat 1 31 0 368 316 161 59 chr4 131186580 131187499 -71140848 - L2 LINE L2 -557 2757 1745 1718 143 7 50 chr4 131187798 131188099 -71140248 - AluJb SINE Alu -24 288 1 248 355 81 32 chr4 131188398 131188584 -71139763 + L2 LINE L2 3074 3268 -4 328 290 65 16 chr4 131188796 131188920 -71139427 - MIR SINE MIR -16 246 117 276 30 0 0 chr4 131189487 131189520 -71138827 + (TAA)n Simple_repeat Simple_repeat 1 33 0 798 263 29 45 chr4 131189685 131189928 -71138419 - MIR SINE MIR -21 241 3 21 0 0 0 chr4 131190673 131190694 -71137653 + AT_rich Low_complexity Low_complexity 1 21 0 1923 149 3 32 chr4 131190954 131191270 -71137077 + AluJb SINE Alu 2 308 -4 21 0 0 0 chr4 131192406 131192427 -71135920 + AT_rich Low_complexity Low_complexity 1 21 0 1809 192 88 57 chr4 131192547 131192706 -71135641 + L1MC4 LINE L1 7421 7574 -468 1883 180 3 3 chr4 131192706 131193001 -71135346 + AluJo SINE Alu 1 295 -17 1809 192 88 57 chr4 131193001 131193441 -71134906 + L1MC4 LINE L1 7574 8039 -3 2218 89 3 3 chr4 131193838 131194129 -71134218 - AluSq SINE Alu -22 291 1 455 257 171 7 chr4 131194699 131194851 -71133496 + MER5A DNA MER1_type 11 187 -2 990 261 110 7 chr4 131195175 131195619 -71132728 - L1M4 LINE L1 -3342 2804 2315 465 317 64 0 chr4 131196073 131196276 -71132071 - MIR SINE MIR -24 238 16 1443 138 27 0 chr4 131196847 131197071 -71131276 + MER30 DNA MER1_type 1 230 0 380 302 0 0 chr4 131197188 131197317 -71131030 - L1ME3A LINE L1 -302 5868 5740 2350 136 21 5 chr4 131197541 131197924 -71130423 - MLT1B LTR MaLR 0 390 2 2361 136 70 0 chr4 131198128 131198526 -71129821 + MSTB LTR MaLR 1 426 0 25 0 0 0 chr4 131198533 131198558 -71129789 + AT_rich Low_complexity Low_complexity 1 25 0 496 316 19 13 chr4 131198573 131198728 -71129619 - MIR SINE MIR -96 166 11 203 268 0 0 chr4 131198758 131198799 -71129548 + (CATG)n Simple_repeat Simple_repeat 3 43 0 309 303 34 0 chr4 131199173 131199292 -71129055 + MIR SINE MIR 140 262 0 241 94 0 0 chr4 131200567 131200599 -71127748 - U2 snRNA snRNA -155 33 2 316 248 40 74 chr4 131201095 131201244 -71127103 - MIR SINE MIR -55 207 64 1890 170 3 10 chr4 131201308 131201483 -71126864 - AluJb SINE Alu -3 309 134 307 56 37 0 chr4 131201483 131201537 -71126810 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 2221 98 0 3 chr4 131201537 131201823 -71126524 - AluSq SINE Alu -28 285 1 1890 170 3 10 chr4 131201823 131201957 -71126390 - AluJb SINE Alu -176 136 1 274 235 147 0 chr4 131201973 131202075 -71126272 - MIR SINE MIR -29 233 117 2345 100 0 0 chr4 131202608 131202899 -71125448 + AluSx SINE Alu 1 291 -21 1979 140 20 3 chr4 131203451 131203743 -71124604 + AluSx SINE Alu 1 297 -15 264 264 28 0 chr4 131203894 131203966 -71124381 - LTR33A LTR ERVL -6 517 444 180 77 0 0 chr4 131204432 131204458 -71123889 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 2422 68 0 0 chr4 131204707 131205001 -71123346 - AluSg SINE Alu -16 294 1 2392 62 0 46 chr4 131205016 131205339 -71123008 - AluY SINE Alu -3 308 1 226 302 0 0 chr4 131205812 131205865 -71122482 + L2 LINE L2 3005 3057 -256 2119 112 0 3 chr4 131206301 131206608 -71121739 + AluSx SINE Alu 1 306 0 675 125 0 19 chr4 131208132 131208236 -71120111 + FLAM_C SINE Alu 2 103 -40 833 255 73 6 chr4 131208339 131208696 -71119651 - L1 LINE L1 -2751 4416 4036 228 231 39 48 chr4 131208670 131208774 -71119573 - L1 LINE L1 -3019 4148 4046 * 26 0 0 0 chr4 131208774 131208800 -71119547 + AT_rich Low_complexity Low_complexity 1 26 0 1105 212 39 16 chr4 131208819 131209074 -71119273 - L1 LINE L1 -5370 1798 1538 811 244 67 13 chr4 131209064 131209289 -71119058 - L1 LINE L1 -6926 242 6 * 260 309 42 99 chr4 131209382 131209835 -71118512 + MLT1K LTR MaLR 13 439 -149 25 0 0 0 chr4 131210225 131210250 -71118097 + AT_rich Low_complexity Low_complexity 1 25 0 2513 70 0 13 chr4 131210641 131210956 -71117391 + AluY SINE Alu 1 311 0 186 294 141 0 chr4 131211543 131211628 -71116719 + MIR SINE MIR 134 230 -32 468 250 97 0 chr4 131212225 131212349 -71115998 - MER58C DNA MER1_type 0 215 80 27 0 0 0 chr4 131213580 131213607 -71114740 + AT_rich Low_complexity Low_complexity 1 27 0 8689 198 27 21 chr4 131213900 131215064 -71113283 + L1MA9 LINE L1 3143 4299 -2013 2067 119 11 0 chr4 131215064 131215349 -71112998 + AluSx SINE Alu 5 292 -20 8689 198 27 21 chr4 131215349 131217302 -71111045 + L1MA9 LINE L1 4299 6274 -38 305 217 0 0 chr4 131218012 131218081 -71110266 + MER34C LTR ERV1 135 203 -382 2101 92 4 4 chr4 131218461 131218733 -71109614 - AluY SINE Alu -39 272 1 1144 160 5 16 chr4 131218770 131218964 -71109383 + AluJo SINE Alu 120 311 -1 498 278 127 91 chr4 131219190 131219307 -71109040 - L1M4 LINE L1 -1438 4708 4597 2290 97 0 0 chr4 131219307 131219596 -71108751 - AluSc SINE Alu -20 289 1 498 278 127 91 chr4 131219596 131219689 -71108658 - L1M4 LINE L1 -1549 4597 4509 279 0 0 0 chr4 131219689 131219720 -71108627 + (CA)n Simple_repeat Simple_repeat 2 32 0 498 278 127 91 chr4 131219720 131220022 -71108325 - L1M4 LINE L1 -1637 4509 4177 414 242 105 46 chr4 131220071 131220361 -71107986 + MLT1I LTR MaLR 73 428 -22 778 260 85 77 chr4 131220378 131220607 -71107740 - L1M4 LINE L1 -1988 4158 3932 1624 171 68 31 chr4 131220607 131220900 -71107447 - AluJb SINE Alu -7 305 2 778 260 85 77 chr4 131220900 131220955 -71107392 - L1M4 LINE L1 -2214 3932 3879 2280 53 3 86 chr4 131220955 131221294 -71107053 - AluY SINE Alu 0 311 1 2312 72 3 3 chr4 131221295 131221588 -71106759 - AluY SINE Alu -18 293 1 778 260 85 77 chr4 131221588 131222168 -71106179 - L1M4 LINE L1 -2266 3880 3284 276 221 52 58 chr4 131222162 131222316 -71106031 - L1M4 LINE L1 -3118 3028 2876 * 1014 153 13 6 chr4 131222414 131222571 -71105776 - AluJb SINE Alu -68 244 87 538 184 35 21 chr4 131222716 131222857 -71105490 - L1MB8 LINE L1 -2 6176 6034 344 259 0 0 chr4 131222996 131223108 -71105239 - L1M4 LINE L1 -3606 2540 2429 318 299 73 51 chr4 131223178 131223355 -71104992 - L1M4 LINE L1 -3730 2416 2236 1994 101 63 3 chr4 131224222 131224508 -71103839 - AluSx SINE Alu -9 303 1 22 0 0 0 chr4 131225602 131225624 -71102723 + GC_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr4 131225761 131225783 -71102564 + (T)n Simple_repeat Simple_repeat 1 22 0 213 191 43 0 chr4 131226825 131226872 -71101475 + (AGTTG)n Simple_repeat Simple_repeat 1 49 0 300 234 78 70 chr4 131226935 131227063 -71101284 + MLT1K LTR MaLR 17 145 -443 446 314 82 13 chr4 131227063 131227222 -71101125 - MER91A DNA MER1_type -5 191 22 308 304 45 27 chr4 131227273 131227385 -71100962 + MLT1K LTR MaLR 195 308 -280 2832 95 22 3 chr4 131227392 131227872 -71100475 + MER1A DNA MER1_type 1 529 0 510 216 61 77 chr4 131227951 131228073 -71100274 + MLT1K LTR MaLR 411 531 -57 2383 91 7 3 chr4 131228073 131228382 -71099965 + AluSx SINE Alu 1 310 -2 510 216 61 77 chr4 131228382 131228440 -71099907 + MLT1K LTR MaLR 531 588 0 2531 64 0 10 chr4 131229231 131229545 -71098802 - AluY SINE Alu 0 311 1 334 263 22 44 chr4 131230282 131230419 -71097928 - L1MC5 LINE L1 -30 7931 7798 499 221 172 5 chr4 131230918 131231122 -71097225 + L1ME3A LINE L1 5722 5959 -211 2391 109 0 0 chr4 131231313 131231625 -71096722 - AluSx SINE Alu 0 312 1 786 285 59 23 chr4 131232112 131232385 -71095962 + L1ME4a LINE L1 5513 5806 -315 1966 129 3 29 chr4 131232385 131232694 -71095653 + AluSx SINE Alu 1 301 -11 786 285 59 23 chr4 131232694 131232809 -71095538 + L1ME4a LINE L1 5806 5915 -206 311 192 14 0 chr4 131232812 131232885 -71095462 + GA-rich Low_complexity Low_complexity 3 76 0 342 153 129 47 chr4 131232887 131232972 -71095375 - MLT1H LTR MaLR -26 523 432 460 213 19 19 chr4 131232985 131233093 -71095254 - MER81 DNA DNA 0 114 7 2099 117 0 0 chr4 131233257 131233538 -71094809 + AluSx SINE Alu 21 301 -11 23 33 0 0 chr4 131233850 131233880 -71094467 + AT_rich Low_complexity Low_complexity 1 30 0 198 321 0 0 chr4 131235477 131235530 -71092817 - L3 LINE CR1 -2 1575 1523 300 244 73 12 chr4 131235583 131235665 -71092682 + MER5A DNA MER1_type 102 188 -1 2323 99 7 3 chr4 131235919 131236221 -71092126 - AluSx SINE Alu -9 303 1 998 178 6 0 chr4 131236585 131236754 -71091593 - AluJb SINE Alu -13 299 130 221 239 0 0 chr4 131238031 131238077 -71090270 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 223 277 0 0 chr4 131238142 131238189 -71090158 - L2 LINE L2 -107 3165 3119 402 119 0 0 chr4 131238450 131238509 -71089838 + L1M4 LINE L1 4872 4930 -1216 231 341 135 0 chr4 131238812 131238938 -71089409 + L3 LINE CR1 260 402 -1175 259 289 84 92 chr4 131238941 131239083 -71089264 + L3 LINE CR1 1435 1575 -2 2309 126 0 0 chr4 131239740 131240050 -71088297 - AluSx SINE Alu -1 311 2 1003 274 61 45 chr4 131241885 131242395 -71085952 + ERVL LTR ERVL 4148 4665 -1099 431 125 51 75 chr4 131242417 131242854 -71085493 + (TCTA)n Simple_repeat Simple_repeat 1 426 0 277 183 34 11 chr4 131242859 131243034 -71085313 + (TA)n Simple_repeat Simple_repeat 2 180 0 192 152 0 0 chr4 131243096 131243129 -71085218 + (TA)n Simple_repeat Simple_repeat 2 34 0 216 0 0 0 chr4 131243140 131243164 -71085183 + (TG)n Simple_repeat Simple_repeat 2 25 0 2921 150 7 26 chr4 131243164 131243711 -71084636 + L1MB4 LINE L1 5644 6180 0 1032 247 37 10 chr4 131244503 131244864 -71083483 - LTR16A LTR ERVL 0 450 16 642 301 19 0 chr4 131245124 131245330 -71083017 + MER63A DNA MER1_type 1 210 0 1346 300 57 50 chr4 131245330 131246282 -71082065 - HERVL LTR ERVL -1571 3649 2741 493 310 75 11 chr4 131246299 131246486 -71081861 - HERVL LTR ERVL -2972 2024 1826 221 342 108 38 chr4 131246488 131246646 -71081701 + L2 LINE L2 2922 3090 -223 265 311 42 24 chr4 131246726 131246893 -71081454 + L1ME LINE L1 5532 5701 -420 2283 130 0 0 chr4 131247322 131247630 -71080717 + AluSx SINE Alu 1 308 -4 450 304 96 19 chr4 131247744 131248057 -71080290 + L1MEd LINE L1 502 838 -5281 331 289 91 15 chr4 131248085 131248282 -71080065 + L1MEd LINE L1 1022 1233 -4886 340 345 99 29 chr4 131248324 131248698 -71079649 + L1MEd LINE L1 1351 1750 -4560 390 21 0 0 chr4 131248745 131248792 -71079555 + (TG)n Simple_repeat Simple_repeat 1 47 0 2517 174 23 1 chr4 131248961 131249787 -71078560 + L1M4 LINE L1 4874 5718 -460 204 326 21 83 chr4 131249879 131249958 -71078389 - L2 LINE L2 -613 2701 2619 2185 94 0 0 chr4 131249958 131250235 -71078112 + AluSc SINE Alu 18 294 -15 204 326 21 83 chr4 131250235 131250348 -71077999 - L2 LINE L2 -695 2619 2521 392 287 0 9 chr4 131250352 131250460 -71077887 - MARNA DNA Mariner -400 186 80 207 0 0 0 chr4 131250674 131250697 -71077650 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 193 271 68 34 chr4 131250718 131250777 -71077570 + L3b LINE CR1 1475 1535 -48 321 349 113 15 chr4 131251543 131251738 -71076609 + L3b LINE CR1 1254 1467 -116 930 211 0 0 chr4 131252275 131252441 -71075906 - AluJb SINE Alu -9 303 138 271 286 221 7 chr4 131252556 131252696 -71075651 - L2 LINE L2 -7 3265 3096 11316 44 4 1 chr4 131252789 131254292 -71074055 - L1PA5 LINE L1 -2343 3803 2297 12639 44 0 0 chr4 131254292 131256625 -71071722 + L1PA5 LINE L1 3822 6154 0 241 254 106 63 chr4 131257075 131257217 -71071130 - L2 LINE L2 -866 2448 2301 887 286 65 50 chr4 131257299 131257517 -71070830 - L2 LINE L2 -13 3300 3072 686 199 122 0 chr4 131257517 131257673 -71070674 - MER96 DNA MER1_type 0 175 1 887 286 65 50 chr4 131257673 131257853 -71070494 - L2 LINE L2 -241 3072 2896 272 265 121 44 chr4 131257863 131258161 -71070186 - L2 LINE L2 -1126 2188 1868 606 41 0 0 chr4 131258956 131259029 -71069318 + tRNA-Cys-TGC tRNA tRNA 1 73 -2 2318 86 3 13 chr4 131309042 131309356 -71018991 - AluSq SINE Alu -2 311 1 742 239 46 39 chr4 131309818 131310077 -71018270 - MIR SINE MIR 0 262 2 705 247 4 95 chr4 131310212 131310455 -71017892 - L2 LINE L2 -1 3312 3092 1966 162 3 3 chr4 131310615 131310924 -71017423 - AluSx SINE Alu -3 309 1 2206 113 0 0 chr4 131313228 131313536 -71014811 + AluSg SINE Alu 1 308 0 876 198 12 113 chr4 131313564 131313703 -71014644 + MER58A DNA MER1_type 1 106 -2314 2367 100 0 3 chr4 131313703 131314014 -71014333 + AluSg SINE Alu 1 310 0 876 198 12 113 chr4 131314014 131314122 -71014225 + MER58A DNA MER1_type 106 223 -1 25 31 0 0 chr4 131314770 131314802 -71013545 + AT_rich Low_complexity Low_complexity 1 32 0 249 256 301 15 chr4 131314886 131315019 -71013328 - MIR3 SINE MIR -7 201 31 2012 158 0 6 chr4 131316282 131316593 -71011754 + AluSx SINE Alu 1 309 -3 186 133 0 0 chr4 131316621 131316651 -71011696 + (T)n Simple_repeat Simple_repeat 1 30 0 1990 159 0 0 chr4 131316858 131317148 -71011199 - AluJb SINE Alu -18 294 5 3132 219 62 18 chr4 131317346 131318262 -71010085 - L1ME1 LINE L1 -2 6164 5210 27 0 0 0 chr4 131318263 131318290 -71010057 + AT_rich Low_complexity Low_complexity 1 27 0 2234 99 0 43 chr4 131318613 131318936 -71009411 - AluSq SINE Alu -4 309 1 737 308 95 25 chr4 131319926 131320325 -71008022 + LTR67 LTR ERVL 97 523 -34 220 234 47 31 chr4 131320432 131320496 -71007851 + MIR SINE MIR 3 67 -195 1358 196 20 4 chr4 131320661 131320906 -71007441 + AluJb SINE Alu 33 281 -31 198 0 0 0 chr4 131320911 131320933 -71007414 + (TA)n Simple_repeat Simple_repeat 2 23 0 310 276 95 35 chr4 131321112 131321228 -71007119 + L2 LINE L2 3145 3267 -5 236 280 27 0 chr4 131321331 131321406 -71006941 + L1ME LINE L1 5737 5813 -308 22 0 0 0 chr4 131321570 131321592 -71006755 + AT_rich Low_complexity Low_complexity 1 22 0 1210 281 74 0 chr4 131321784 131322147 -71006200 + LTR16C LTR ERVL 64 453 -38 550 281 102 20 chr4 131322158 131322354 -71005993 + MIR SINE MIR 24 235 -27 415 315 174 0 chr4 131322436 131322585 -71005762 - MER5A DNA MER1_type 0 189 15 204 97 0 0 chr4 131322696 131322727 -71005620 + (CTA)n Simple_repeat Simple_repeat 1 31 0 1851 254 150 30 chr4 131323132 131323659 -71004688 - MLT1H1 LTR MaLR 0 590 1 419 278 159 7 chr4 131324439 131324590 -71003757 + MIR SINE MIR 16 189 -73 338 249 92 80 chr4 131326544 131326793 -71001554 - MIR SINE MIR -9 253 2 242 194 0 42 chr4 131327892 131327964 -71000383 + MER116 DNA Mariner 12 80 0 388 187 28 28 chr4 131329031 131329138 -70999209 + L1MC5 LINE L1 7272 7378 -583 340 316 0 0 chr4 131329138 131329217 -70999130 - L2 LINE L2 -1818 1496 1418 1669 242 71 63 chr4 131329369 131329459 -70998888 + MLT2E LTR ERVL 1 89 -539 1623 210 0 7 chr4 131329459 131329749 -70998598 + AluJo SINE Alu 1 288 -24 1669 242 71 63 chr4 131329749 131330281 -70998066 + MLT2E LTR ERVL 89 628 0 193 327 195 0 chr4 131330540 131330699 -70997648 - L3 LINE CR1 -803 774 585 244 315 0 22 chr4 131330950 131331039 -70997308 - L2 LINE L2 -1038 2276 2190 30 77 0 0 chr4 131331064 131331129 -70997218 + AT_rich Low_complexity Low_complexity 1 65 0 648 172 55 0 chr4 131331149 131331277 -70997070 + MER2 DNA MER2_type 1 135 -210 4929 152 34 25 chr4 131331277 131332632 -70995715 - L1PA16 LINE L1 0 6166 4811 475 236 153 30 chr4 131332632 131332835 -70995512 + MER2 DNA MER2_type 118 345 0 318 148 0 0 chr4 131333201 131333255 -70995092 + L1MC4a LINE L1 5725 5778 -2030 357 267 72 39 chr4 131333470 131333548 -70994799 + L1MC4a LINE L1 6061 6135 -1673 3929 137 42 58 chr4 131333548 131333869 -70994478 + L1MA8 LINE L1 5466 5791 -500 2425 88 0 0 chr4 131333869 131334175 -70994172 + AluY SINE Alu 1 306 -5 3929 137 42 58 chr4 131334175 131334691 -70993656 + L1MA8 LINE L1 5791 6289 -2 357 267 72 39 chr4 131334691 131334792 -70993555 + L1MC4a LINE L1 6135 6246 -1562 25 0 0 0 chr4 131334885 131334910 -70993437 + AT_rich Low_complexity Low_complexity 1 25 0 254 226 32 0 chr4 131335003 131335065 -70993282 + GA-rich Low_complexity Low_complexity 3 66 0 973 214 111 111 chr4 131335068 131335465 -70992882 + L1MC5 LINE L1 6654 7053 -908 2517 58 0 0 chr4 131335465 131335760 -70992587 + AluY SINE Alu 1 295 -16 973 214 111 111 chr4 131335760 131335947 -70992400 + L1MC5 LINE L1 7052 7238 -723 7167 163 27 6 chr4 131336065 131336793 -70991554 + L1PB2 LINE L1 3669 4380 -1771 189 0 0 0 chr4 131336793 131336814 -70991533 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 7167 163 27 6 chr4 131336814 131338171 -70990176 + L1PB2 LINE L1 4380 5802 -349 492 18 0 0 chr4 131338171 131338228 -70990119 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 7167 163 27 6 chr4 131338228 131338581 -70989766 + L1PB2 LINE L1 5802 6146 -5 198 0 0 0 chr4 131338596 131338618 -70989729 + (TG)n Simple_repeat Simple_repeat 2 23 0 519 161 21 42 chr4 131338648 131338791 -70989556 + L1MC5 LINE L1 7790 7929 -32 1035 236 12 46 chr4 131338805 131339046 -70989301 + MIR SINE MIR 29 261 -1 265 350 26 43 chr4 131339389 131339506 -70988841 + MIR3 SINE MIR 10 124 -84 1687 180 3 10 chr4 131340103 131340392 -70987955 + AluJb SINE Alu 1 287 -25 26 0 0 0 chr4 131340426 131340452 -70987895 + AT_rich Low_complexity Low_complexity 1 26 0 226 282 106 0 chr4 131340452 131340537 -70987810 + MIR SINE MIR 168 261 -1 284 372 28 7 chr4 131340828 131340973 -70987374 - L2 LINE L2 0 3272 3125 277 119 0 0 chr4 131341332 131341374 -70986973 + L1P3 LINE L1 786 827 -5634 6318 25 0 1 chr4 131341812 131342546 -70985801 - L1PA3 LINE L1 -3 6152 5420 354 183 0 0 chr4 131342996 131343067 -70985280 + GA-rich Low_complexity Low_complexity 4 74 0 920 154 0 5 chr4 131343085 131343303 -70985044 + GA-rich Low_complexity Low_complexity 1 216 0 247 250 80 11 chr4 131343948 131344036 -70984311 + L2 LINE L2 2431 2524 -790 1979 159 3 0 chr4 131344256 131344552 -70983795 - AluSx SINE Alu -15 297 1 444 351 13 4 chr4 131344603 131344828 -70983519 - L1ME LINE L1 -461 5660 5434 233 119 24 0 chr4 131346320 131346362 -70981985 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 863 146 127 0 chr4 131346572 131346737 -70981610 + L1PA16 LINE L1 5972 6157 -9 494 283 46 17 chr4 131347293 131347466 -70980881 - MIR SINE MIR -6 256 79 864 174 122 41 chr4 131347553 131347749 -70980598 - AluJo SINE Alu -30 282 71 588 29 0 0 chr4 131347749 131347819 -70980528 + (TC)n Simple_repeat Simple_repeat 2 71 0 198 0 0 0 chr4 131347818 131347840 -70980507 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 274 111 0 0 chr4 131348153 131348198 -70980149 - AluSc SINE Alu -4 295 251 202 247 21 0 chr4 131348198 131348291 -70980056 + (TA)n Simple_repeat Simple_repeat 2 96 0 551 300 102 28 chr4 131349690 131349973 -70978374 + L2 LINE L2 3010 3313 0 1422 169 115 8 chr4 131350782 131351043 -70977304 + AluJb SINE Alu 1 289 -23 211 250 0 0 chr4 131351141 131351185 -70977162 + A-rich Low_complexity Low_complexity 104 147 0 674 255 75 31 chr4 131353871 131354165 -70974182 - MER102b DNA MER1_type -3 338 32 182 283 50 0 chr4 131354433 131354493 -70973854 + MIR SINE MIR 157 219 -43 189 0 0 0 chr4 131354995 131355016 -70973331 + (T)n Simple_repeat Simple_repeat 1 21 0 1329 209 19 29 chr4 131355204 131355520 -70972827 - AluSq SINE Alu 0 313 1 2898 80 2 2 chr4 131355870 131356268 -70972079 - MLT2A1 LTR ERVL -46 398 1 1936 129 27 51 chr4 131356362 131356733 -70971614 + THE1B LTR MaLR 1 362 -2 2308 86 0 64 chr4 131357241 131357568 -70970779 + AluSg SINE Alu 1 306 -4 2322 108 62 8 chr4 131357908 131358261 -70970086 - THE1C LTR MaLR 0 375 4 10497 97 38 43 chr4 131358264 131359851 -70968496 - THE1C-int LTR MaLR 0 1580 1 2125 131 44 33 chr4 131359851 131360218 -70968129 - THE1C LTR MaLR 0 375 5 189 0 0 0 chr4 131361460 131361481 -70966866 + (A)n Simple_repeat Simple_repeat 1 21 0 1803 282 154 19 chr4 131361481 131362500 -70965847 + L1M4 LINE L1 3495 4750 -1396 189 0 0 0 chr4 131362500 131362521 -70965826 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1803 282 154 19 chr4 131362521 131362879 -70965468 + L1M4 LINE L1 4750 5058 -1088 490 286 68 38 chr4 131362895 131363673 -70964674 - L1MEd LINE L1 -4746 1564 707 24 91 0 0 chr4 131364482 131364548 -70963799 + AT_rich Low_complexity Low_complexity 1 66 0 2066 108 3 17 chr4 131364639 131364935 -70963412 + AluSx SINE Alu 1 292 -20 275 78 3 0 chr4 131364941 131364992 -70963355 - L1MA7 LINE L1 0 6291 6240 260 289 157 33 chr4 131365206 131365327 -70963020 + L2 LINE L2 3177 3312 -1 303 176 256 0 chr4 131365500 131365625 -70962722 - L1ME4a LINE L1 -41 6080 5924 284 106 87 10 chr4 131365625 131365729 -70962618 + (TA)n Simple_repeat Simple_repeat 1 112 0 266 185 76 0 chr4 131365762 131365854 -70962493 + (TA)n Simple_repeat Simple_repeat 1 99 0 236 221 32 21 chr4 131365884 131365979 -70962368 - L1ME4a LINE L1 -235 5886 5791 1046 101 54 6 chr4 131366001 131366169 -70962178 + MER30 DNA MER1_type 1 176 -54 21 0 0 0 chr4 131366294 131366315 -70962032 + AT_rich Low_complexity Low_complexity 1 21 0 1051 188 0 0 chr4 131366386 131366556 -70961791 - AluJb SINE Alu -25 287 118 2097 129 0 0 chr4 131366612 131366906 -70961441 - AluSq SINE Alu -19 294 1 439 298 82 55 chr4 131366906 131367198 -70961149 - L1ME4a LINE L1 -539 5582 5283 236 254 0 0 chr4 131367574 131367645 -70960702 - L1ME2 LINE L1 -8 6156 6086 570 206 97 87 chr4 131367721 131367806 -70960541 - L1MCa LINE L1 -4753 1673 1590 1572 178 87 31 chr4 131367806 131368161 -70960186 + THE1C LTR MaLR 1 375 0 570 206 97 87 chr4 131368161 131368441 -70959906 - L1MCa LINE L1 -4836 1590 1301 9529 72 10 75 chr4 131368441 131369913 -70958434 + SVA Other Other 10 1385 -1 570 206 97 87 chr4 131369913 131369949 -70958398 - L1MCa LINE L1 -5125 1301 1267 268 321 18 27 chr4 131370055 131370167 -70958180 + MIR SINE MIR 103 213 -49 554 279 95 18 chr4 131370265 131370559 -70957788 - L2 LINE L2 -256 3057 2741 2194 109 0 0 chr4 131370604 131370889 -70957458 + AluSg SINE Alu 11 295 -15 385 227 36 0 chr4 131371728 131371838 -70956509 + MER117 DNA MER1_type 51 164 -33 302 264 36 71 chr4 131371878 131372018 -70956329 + MIR SINE MIR 83 217 -45 892 301 63 25 chr4 131372045 131372399 -70955948 - MER34 LTR ERV1 -12 530 150 183 80 0 0 chr4 131372399 131372424 -70955923 + (TGG)n Simple_repeat Simple_repeat 2 26 0 892 301 63 25 chr4 131372424 131372580 -70955767 - MER34 LTR ERV1 -392 150 1 633 297 87 68 chr4 131373356 131374207 -70954140 - L1M4 LINE L1 -2799 3347 2481 195 107 71 18 chr4 131374456 131374472 -70953875 + GA-rich Low_complexity Low_complexity 4 18 -44 2375 94 7 3 chr4 131374472 131374780 -70953567 + AluSc SINE Alu 1 309 0 195 107 71 18 chr4 131374780 131374819 -70953528 + GA-rich Low_complexity Low_complexity 18 62 0 1871 187 18 3 chr4 131375509 131375852 -70952495 + MER7A DNA MER2_type 1 346 0 1074 277 97 53 chr4 131375928 131376612 -70951735 + L2 LINE L2 2498 3220 -93 784 269 21 5 chr4 131376677 131376870 -70951477 - MIR SINE MIR -35 227 32 871 233 48 10 chr4 131377493 131377699 -70950648 - MIR SINE MIR 0 262 49 180 186 136 34 chr4 131377729 131377788 -70950559 - MIR SINE MIR -1 261 197 409 245 245 7 chr4 131377821 131377968 -70950379 - MIR SINE MIR -55 207 26 517 274 7 7 chr4 131378130 131378276 -70950071 - MIR SINE MIR -8 254 109 5408 117 65 31 chr4 131380238 131380421 -70947926 + Tigger1 DNA MER2_type 22 197 -2221 689 62 0 21 chr4 131380421 131380518 -70947829 - L1PA8 LINE L1 -8 6164 6070 5408 117 65 31 chr4 131380518 131380938 -70947409 + Tigger1 DNA MER2_type 197 601 -1817 883 110 0 0 chr4 131380938 131381056 -70947291 + FLAM_C SINE Alu 1 118 -15 186 43 0 0 chr4 131381060 131381083 -70947264 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 5408 117 65 31 chr4 131381083 131381450 -70946897 + Tigger1 DNA MER2_type 603 1031 -1387 3560 154 36 40 chr4 131381450 131382021 -70946326 + MER50 LTR ERV1 1 570 -164 2101 130 7 0 chr4 131382021 131382329 -70946018 - AluSx SINE Alu -2 310 1 3560 154 36 40 chr4 131382329 131382478 -70945869 + MER50 LTR ERV1 570 718 -16 * 8178 127 20 14 chr4 131382470 131383539 -70944808 + Tigger1 DNA MER2_type 1027 2107 -311 2258 75 17 3 chr4 131383539 131383832 -70944515 + AluY SINE Alu 1 297 -14 8178 127 20 14 chr4 131383832 131384143 -70944204 + Tigger1 DNA MER2_type 2107 2415 -3 6359 92 21 6 chr4 131384223 131385274 -70943073 + L1PA11 LINE L1 5107 6174 0 2090 137 3 3 chr4 131386580 131386887 -70941460 - AluSx SINE Alu -5 307 1 2090 127 7 3 chr4 131387160 131387467 -70940880 - AluSx SINE Alu -4 308 1 2269 109 0 3 chr4 131387994 131388297 -70940050 - AluSq SINE Alu -11 302 1 218 250 78 52 chr4 131388634 131388750 -70939597 + L3b LINE CR1 1326 1444 -139 412 274 289 15 chr4 131389090 131389291 -70939056 - MIR SINE MIR -6 256 1 2024 122 28 0 chr4 131389574 131389860 -70938487 + AluSc SINE Alu 1 294 -15 258 261 32 0 chr4 131390325 131390396 -70937951 + MIR SINE MIR 72 145 -63 2202 91 0 17 chr4 131390460 131390758 -70937589 - AluY SINE Alu -17 294 2 278 209 30 0 chr4 131390760 131390827 -70937520 + MIR SINE MIR 119 187 -75 1518 263 46 0 chr4 131390830 131391221 -70937126 - MLT1I LTR MaLR 0 409 1 307 98 197 0 chr4 131392996 131393057 -70935290 - MIR SINE MIR -105 157 85 364 283 68 54 chr4 131396563 131396768 -70931579 + L2 LINE L2 2156 2363 -951 2245 254 32 41 chr4 131396789 131397504 -70930843 - MER21B LTR ERV1 -57 806 98 468 286 75 14 chr4 131397737 131397884 -70930463 - MIR3 SINE MIR -36 172 17 23 0 0 0 chr4 131398452 131398475 -70929872 + AT_rich Low_complexity Low_complexity 1 23 0 866 135 0 0 chr4 131398475 131398608 -70929739 - L1PB4 LINE L1 -2 6154 6022 219 257 14 118 chr4 131398878 131399022 -70929325 - L2 LINE L2 -211 3061 2933 1990 157 0 3 chr4 131400606 131400911 -70927436 + AluJb SINE Alu 1 304 -8 2395 93 0 3 chr4 131401499 131401809 -70926538 - AluSx SINE Alu -3 309 1 264 292 131 22 chr4 131402145 131402282 -70926065 - MIR3 SINE MIR -1 207 56 679 246 92 14 chr4 131402393 131402600 -70925747 + MIR SINE MIR 40 262 0 287 303 61 30 chr4 131402691 131402790 -70925557 - L2 LINE L2 -3 3269 3168 186 43 0 0 chr4 131402790 131402813 -70925534 + (TG)n Simple_repeat Simple_repeat 2 24 0 222 313 49 42 chr4 131404042 131404186 -70924161 + L2 LINE L2 2346 2490 -824 460 316 24 18 chr4 131404472 131404640 -70923707 + MIR SINE MIR 90 258 -4 21 0 0 0 chr4 131407149 131407170 -70921177 + AT_rich Low_complexity Low_complexity 1 21 0 1793 162 28 7 chr4 131407217 131407501 -70920846 - AluJb SINE Alu -22 290 1 984 251 24 0 chr4 131407633 131407884 -70920463 + MIR SINE MIR 3 259 -3 21 36 0 0 chr4 131408149 131408177 -70920170 + AT_rich Low_complexity Low_complexity 1 28 0 351 212 121 89 chr4 131408645 131408787 -70919560 - L1MC5 LINE L1 -33 7928 7792 2171 133 0 0 chr4 131408787 131409088 -70919259 - AluSx SINE Alu -10 302 2 351 212 121 89 chr4 131409088 131409360 -70918987 - L1MC5 LINE L1 -169 7792 7501 757 199 78 11 chr4 131409363 131409554 -70918793 - MER3 DNA MER1_type 0 209 6 338 258 126 63 chr4 131409623 131409813 -70918534 - L1MC5 LINE L1 -530 7431 7230 508 321 15 28 chr4 131409820 131410144 -70918203 - L1ME LINE L1 -320 5801 5482 29 0 0 0 chr4 131410764 131410793 -70917554 + AT_rich Low_complexity Low_complexity 1 29 0 29177 101 12 11 chr4 131411807 131417495 -70910852 - L1PA7 LINE L1 -5 6464 758 241 25 0 0 chr4 131417596 131417636 -70910711 + Alu SINE Alu 261 300 0 2317 92 13 3 chr4 131417901 131418207 -70910140 + AluSx SINE Alu 1 309 -3 544 96 0 0 chr4 131418415 131418488 -70909859 + AluJ/FLAM SINE Alu 1 73 -239 216 350 121 21 chr4 131418710 131418850 -70909497 + L2 LINE L2 2916 3069 -203 197 355 16 0 chr4 131418948 131419010 -70909337 + L2 LINE L2 3203 3265 -7 518 252 76 0 chr4 131419032 131419151 -70909196 + MIR SINE MIR 19 146 -62 2184 115 11 0 chr4 131419159 131419446 -70908901 - AluSg SINE Alu -20 290 1 2898 80 2 2 chr4 131419795 131420193 -70908154 - MLT2A1 LTR ERVL -46 398 1 1948 127 27 51 chr4 131420287 131420658 -70907689 + THE1B LTR MaLR 1 362 -2 2283 89 0 62 chr4 131421166 131421491 -70906856 + AluSg SINE Alu 1 305 -5 2322 108 62 8 chr4 131421828 131422181 -70906166 - THE1C LTR MaLR 0 375 4 10483 98 38 43 chr4 131422184 131423771 -70904576 - THE1C-int LTR MaLR 0 1580 1 2161 129 43 32 chr4 131423771 131424142 -70904205 - THE1C LTR MaLR 0 375 1 229 198 47 105 chr4 131424395 131424481 -70903866 + MER5B DNA MER1_type 86 166 -12 21 0 0 0 chr4 131424616 131424637 -70903710 + AT_rich Low_complexity Low_complexity 1 21 0 237 271 0 0 chr4 131424908 131424956 -70903391 + G-rich Low_complexity Low_complexity 1 48 0 445 327 153 10 chr4 131426871 131426935 -70901412 + L2 LINE L2 3039 3092 -180 219 69 0 0 chr4 131426935 131426964 -70901383 + (TCCTG)n Simple_repeat Simple_repeat 2 30 0 445 327 153 10 chr4 131426964 131427101 -70901246 + L2 LINE L2 3092 3269 -3 857 219 57 86 chr4 131427775 131428231 -70900116 - L1MC5 LINE L1 -50 7911 7469 29 0 0 0 chr4 131428231 131428260 -70900087 + AT_rich Low_complexity Low_complexity 1 29 0 691 196 0 0 chr4 131428333 131428476 -70899871 - L1MC5 LINE L1 -520 7441 7299 961 180 31 21 chr4 131428559 131428753 -70899594 + MER3 DNA MER1_type 1 196 -13 1357 246 87 33 chr4 131428768 131429513 -70898834 - L1MC5 LINE L1 -757 7204 6414 351 244 119 16 chr4 131429880 131430073 -70898274 - L1MC5 LINE L1 -1804 6004 5792 1632 174 36 0 chr4 131430107 131430388 -70897959 - AluJo SINE Alu -21 291 1 231 88 0 0 chr4 131430448 131430482 -70897865 + (CAG)n Simple_repeat Simple_repeat 2 35 0 23 33 0 0 chr4 131430648 131430678 -70897669 + AT_rich Low_complexity Low_complexity 1 30 0 770 206 110 71 chr4 131431996 131432395 -70895952 - MER110A LTR ERV1 -9 459 84 4082 243 79 61 chr4 131432409 131432570 -70895777 - MER110A-int LTR ERV1 -308 4339 4182 2080 142 18 9 chr4 131432570 131432901 -70895446 - MER1B DNA MER1_type 0 337 4 4082 243 79 61 chr4 131432901 131433951 -70894396 - MER110A-int LTR ERV1 -465 4182 3081 2447 80 0 0 chr4 131433951 131434253 -70894094 + AluY SINE Alu 1 302 -9 4082 243 79 61 chr4 131434253 131434892 -70893455 - MER110A-int LTR ERV1 -1566 3081 2455 820 210 98 24 chr4 131434892 131435097 -70893250 - MER58A DNA MER1_type 0 224 5 198 240 198 31 chr4 131435275 131435371 -70892976 - L2 LINE L2 -2 3311 3200 2303 85 3 3 chr4 131435541 131435835 -70892512 + AluSc SINE Alu 1 294 -15 571 147 0 0 chr4 131436495 131436590 -70891757 - AluSx SINE Alu -1 311 217 1245 141 0 0 chr4 131436592 131436762 -70891585 - AluSx SINE Alu -142 170 1 227 31 31 0 chr4 131436840 131436872 -70891475 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 232 162 15 29 chr4 131436881 131436949 -70891398 + A-rich Low_complexity Low_complexity 1 67 0 32 26 0 0 chr4 131437059 131437098 -70891249 + AT_rich Low_complexity Low_complexity 1 39 0 667 196 65 6 chr4 131437189 131437357 -70890990 + MER96B DNA MER1_type? 2 179 -238 180 341 0 47 chr4 131437565 131437650 -70890697 - MIR3 SINE MIR -37 171 91 25 0 0 0 chr4 131438495 131438520 -70889827 + AT_rich Low_complexity Low_complexity 1 25 0 247 330 0 11 chr4 131441422 131441510 -70886837 + MIR SINE MIR 24 110 -98 5457 84 4 13 chr4 131442343 131443137 -70885210 - L1P LINE L1 -5359 787 1 6228 174 13 18 chr4 131443137 131444714 -70883633 - L1PB1 LINE L1 -181 6686 5123 183 42 0 0 chr4 131444714 131444738 -70883609 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6228 174 13 18 chr4 131444738 131445263 -70883084 - L1PB1 LINE L1 -1744 5123 4597 207 0 0 0 chr4 131445274 131445297 -70883050 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 26813 106 5 7 chr4 131445309 131450466 -70877881 - L1PA7 LINE L1 -2 6467 1323 5097 124 7 1 chr4 131450468 131451240 -70877107 - L1PA7 LINE L1 -5681 780 5 7888 171 26 10 chr4 131451246 131452485 -70875862 - L1PB1 LINE L1 -2250 4612 3394 2109 134 0 0 chr4 131452485 131452775 -70875572 + AluSg SINE Alu 1 290 -20 7888 171 26 10 chr4 131452775 131454159 -70874188 - L1PB1 LINE L1 -3468 3394 1932 2529 84 0 0 chr4 131454159 131454470 -70873877 - AluY SINE Alu 0 311 1 7888 171 26 10 chr4 131454470 131454975 -70873372 - L1PB1 LINE L1 -4930 1932 1436 3070 245 105 7 chr4 131454976 131456016 -70872331 - L1PB1 LINE L1 -5710 1153 12 1445 199 33 15 chr4 131456108 131456439 -70871908 + MER44D DNA MER2_type 2 608 -1 182 281 0 47 chr4 131457716 131457780 -70870567 + L2 LINE L2 3185 3245 -27 901 101 16 0 chr4 131458159 131458288 -70870059 + L1PB1 LINE L1 6020 6150 -1 2268 98 3 3 chr4 131458363 131458668 -70869679 + AluSg SINE Alu 1 305 -5 225 250 134 47 chr4 131459109 131459281 -70869066 - L1MC/D LINE L1 -1897 5911 5725 735 300 108 61 chr4 131459460 131459777 -70868570 - L1MC/D LINE L1 -2700 3446 3145 704 207 0 15 chr4 131459777 131459912 -70868435 - FLAM_A SINE Alu 0 133 1 735 300 108 61 chr4 131459912 131460331 -70868016 - L1MC/D LINE L1 -3001 3145 2675 360 241 48 48 chr4 131460358 131460524 -70867823 - HAL1b LINE L1 -714 634 469 22 0 0 0 chr4 131460673 131460695 -70867652 + AT_rich Low_complexity Low_complexity 1 22 0 1139 179 39 132 chr4 131460886 131461295 -70867052 - MLT1B LTR MaLR -19 371 1 3076 184 113 7 chr4 131461599 131462361 -70865986 + MER63C DNA MER1_type 82 924 -6 180 0 0 0 chr4 131463296 131463316 -70865031 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr4 131467906 131467928 -70860419 + AT_rich Low_complexity Low_complexity 1 22 0 502 313 119 45 chr4 131468280 131468446 -70859901 + HAL1b LINE L1 39 191 -1157 1976 163 0 7 chr4 131468446 131468753 -70859594 + AluJb SINE Alu 1 305 -7 1951 160 0 10 chr4 131468753 131469060 -70859287 + AluSx SINE Alu 5 308 -4 502 313 119 45 chr4 131469060 131469384 -70858963 + HAL1b LINE L1 190 469 -879 1855 132 40 48 chr4 131469594 131469972 -70858375 + THE1C LTR MaLR 1 375 0 1386 184 95 16 chr4 131470412 131470728 -70857619 + MER2 DNA MER2_type 4 344 0 309 291 74 46 chr4 131470765 131471050 -70857297 - HERVL LTR ERVL -4401 1253 961 2300 92 0 3 chr4 131473220 131473514 -70854833 + AluY SINE Alu 1 293 -18 2714 129 24 2 chr4 131473838 131474257 -70854090 + MSTA LTR MaLR 1 428 0 9159 164 29 4 chr4 131474257 131475869 -70852478 + MSTA-int LTR MaLR 1 1651 0 2763 126 24 5 chr4 131475869 131476289 -70852058 + MSTA LTR MaLR 1 428 0 275 346 111 12 chr4 131477155 131477317 -70851030 - L2 LINE L2 -214 3058 2881 2653 23 0 10 chr4 131477317 131477625 -70850722 + AluY SINE Alu 1 305 -6 1150 185 188 19 chr4 131477725 131478033 -70850314 - MSTA LTR MaLR -68 360 1 1132 204 83 4 chr4 131478223 131478383 -70849964 - AluJo SINE Alu -16 296 111 387 0 0 0 chr4 131478383 131478426 -70849921 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 1132 204 83 4 chr4 131478426 131478495 -70849852 - AluJo SINE Alu -201 111 49 1032 144 6 0 chr4 131478510 131478691 -70849656 - L1MA6 LINE L1 -33 6267 6086 1871 178 10 0 chr4 131479334 131479643 -70848704 - AluJo SINE Alu 0 312 1 568 222 0 16 chr4 131479643 131479769 -70848578 - L2 LINE L2 -7 3306 3183 2185 107 0 10 chr4 131479792 131480082 -70848265 + AluSq SINE Alu 1 287 -26 1337 119 0 0 chr4 131480182 131480367 -70847980 + AluSg/x SINE Alu 128 312 0 560 247 226 13 chr4 131480373 131480608 -70847739 + L2 LINE L2 3029 3313 0 189 328 32 24 chr4 131480748 131480873 -70847474 - MIR3 SINE MIR -76 132 7 220 258 145 0 chr4 131481568 131481630 -70846717 - MIR SINE MIR -157 105 35 234 250 0 59 chr4 131481757 131481825 -70846522 - L2 LINE L2 -8 3264 3201 284 260 14 0 chr4 131482789 131482862 -70845485 - MIR SINE MIR -108 154 81 244 309 45 9 chr4 131483013 131483123 -70845224 - MER5B DNA MER1_type -2 176 63 2779 215 28 25 chr4 131483140 131483480 -70844867 + MER82 DNA MER2_type 2 346 -307 2297 91 0 3 chr4 131483480 131483798 -70844549 - L1PB1 LINE L1 0 6151 5835 2779 215 28 25 chr4 131483798 131484107 -70844240 + MER82 DNA MER2_type 346 653 0 476 200 90 7 chr4 131484610 131484755 -70843592 - L1 LINE L1 -3063 3083 2927 894 217 127 20 chr4 131484856 131485155 -70843192 - L1P LINE L1 -3654 2492 2162 1795 234 50 9 chr4 131485160 131485834 -70842513 + L1 LINE L1 2749 3450 -2696 37819 39 2 2 chr4 131485943 131491594 -70836753 + L1PA3 LINE L1 507 6152 -3 723 164 140 0 chr4 131491586 131491757 -70836590 + L1PB1 LINE L1 5956 6150 -1 * 988 145 23 12 chr4 131491813 131491985 -70836362 - L1MC1 LINE L1 0 6333 6160 2243 231 36 19 chr4 131491999 131492823 -70835524 - L1M4 LINE L1 -2485 3661 2824 7720 167 55 13 chr4 131493085 131494823 -70833524 - L1PA16 LINE L1 -16 6150 4275 2242 109 0 10 chr4 131494823 131495134 -70833213 + AluSc SINE Alu 1 308 -1 7720 167 55 13 chr4 131495134 131496058 -70832289 - L1PA16 LINE L1 -1891 4275 3391 872 87 40 0 chr4 131496160 131496309 -70832038 + L1MA3 LINE L1 6045 6199 -106 369 300 70 74 chr4 131496487 131496757 -70831590 + L2 LINE L2 3004 3272 0 270 285 65 32 chr4 131497323 131497446 -70830901 + L2 LINE L2 3144 3270 -2 22 35 0 0 chr4 131498059 131498088 -70830259 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 131498568 131498597 -70829750 + AT_rich Low_complexity Low_complexity 1 29 0 2205 92 0 0 chr4 131499235 131499537 -70828810 - AluSx SINE Alu 0 302 1 590 228 114 59 chr4 131499689 131499908 -70828439 + MIR SINE MIR 28 258 -4 380 306 29 138 chr4 131500829 131501104 -70827243 + L2 LINE L2 2990 3234 -38 23 0 0 0 chr4 131502226 131502249 -70826098 + AT_rich Low_complexity Low_complexity 1 23 0 225 172 0 0 chr4 131502249 131502307 -70826040 - L1MA7 LINE L1 0 6291 6234 299 246 52 37 chr4 131502310 131502372 -70825975 + L1MA7 LINE L1 5998 6058 -233 345 47 0 0 chr4 131502372 131502415 -70825932 + (TG)n Simple_repeat Simple_repeat 2 44 0 299 246 52 37 chr4 131502415 131502486 -70825861 + L1MA7 LINE L1 6058 6133 -158 321 360 80 0 chr4 131503938 131504088 -70824259 - MIR SINE MIR -4 258 97 444 19 0 0 chr4 131504535 131504588 -70823759 + (CA)n Simple_repeat Simple_repeat 1 53 0 24 0 0 0 chr4 131505898 131505922 -70822425 + AT_rich Low_complexity Low_complexity 1 24 0 192 163 0 0 chr4 131507459 131507502 -70820845 + (TAA)n Simple_repeat Simple_repeat 2 44 0 856 140 0 37 chr4 131507902 131508038 -70820309 - FLAM_C SINE Alu -2 131 1 311 258 94 57 chr4 131509430 131509589 -70818758 + MIR SINE MIR 33 197 -65 2394 101 0 0 chr4 131511881 131512187 -70816160 + AluSc SINE Alu 1 306 -3 270 81 0 0 chr4 131512742 131512779 -70815568 + (CAT)n Simple_repeat Simple_repeat 3 39 0 318 246 82 16 chr4 131513661 131513783 -70814564 + L1ME3A LINE L1 4217 4346 -1800 1264 220 24 3 chr4 131513817 131514317 -70814030 + MER68 LTR ERV1 1 553 -9 1647 268 109 21 chr4 131514326 131515977 -70812370 + L1ME3A LINE L1 4377 6170 0 196 325 0 26 chr4 131516194 131516271 -70812076 - L2 LINE L2 -212 3060 2986 650 259 17 35 chr4 131516305 131516479 -70811868 - MER5B DNA MER1_type -7 171 1 290 318 55 51 chr4 131516505 131516779 -70811568 - L2 LINE L2 -408 2906 2632 1472 184 10 48 chr4 131516802 131517112 -70811235 - AluJo SINE Alu -14 298 1 268 347 107 0 chr4 131517170 131517291 -70811056 + L2 LINE L2 2918 3051 -221 1372 218 94 7 chr4 131517300 131517726 -70810621 + LTR37B LTR ERV1 6 468 0 24 32 0 0 chr4 131517882 131517913 -70810434 + AT_rich Low_complexity Low_complexity 1 31 0 1889 149 3 17 chr4 131518411 131518713 -70809634 - AluSx SINE Alu -6 306 9 749 221 61 6 chr4 131519225 131519388 -70808959 + MER96 DNA MER1_type 1 172 -3 321 303 37 74 chr4 131519487 131519649 -70808698 + MER5A DNA MER1_type 4 159 -30 255 170 0 0 chr4 131520083 131520130 -70808217 + (CA)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chr4 131520279 131520307 -70808040 + AT_rich Low_complexity Low_complexity 1 28 0 885 302 41 47 chr4 131520488 131520952 -70807395 + L1ME2 LINE L1 6 466 -5604 831 270 50 23 chr4 131521243 131521721 -70806626 + L1ME2 LINE L1 531 1021 -5049 1073 284 19 9 chr4 131521739 131522056 -70806291 + LTR40b LTR ERVL 143 462 0 777 206 112 17 chr4 131522056 131522405 -70805942 + L1ME2 LINE L1 2721 3102 -2978 2649 58 0 0 chr4 131522405 131522713 -70805634 + AluY SINE Alu 1 308 -3 330 26 0 0 chr4 131522713 131522752 -70805595 + (TA)n Simple_repeat Simple_repeat 1 39 0 1393 211 99 32 chr4 131522757 131523160 -70805187 + MLT1D LTR MaLR 76 505 0 586 279 28 12 chr4 131523160 131523407 -70804940 + L1ME2 LINE L1 3167 3417 -2663 880 259 104 8 chr4 131523408 131523794 -70804553 + L1ME2 LINE L1 3840 4262 -1818 1024 237 83 26 chr4 131523850 131524923 -70803424 + L1ME2 LINE L1 4869 6098 0 1012 106 0 19 chr4 131525068 131525228 -70803119 - L1PB1 LINE L1 0 6151 5995 847 147 0 0 chr4 131525456 131525592 -70802755 - L1PA16 LINE L1 -16 6150 6015 2899 103 19 18 chr4 131525946 131526472 -70801875 - L1PA16 LINE L1 -391 5765 4396 6497 197 3 7 chr4 131526523 131527893 -70800454 - L1 LINE L1 -840 5306 3943 185 0 0 39 chr4 131528569 131528595 -70799752 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2428 88 23 3 chr4 131528610 131528952 -70799395 - L1PA10 LINE L1 -11 6157 5809 2726 81 22 0 chr4 131529104 131529474 -70798873 + L1PA15 LINE L1 5783 6160 -5 248 330 125 9 chr4 131529476 131529588 -70798759 - MIR3 SINE MIR -13 195 71 650 284 51 0 chr4 131530334 131530382 -70797965 - MIR3 SINE MIR -5 203 159 2210 96 3 0 chr4 131530382 131530673 -70797674 + AluSx SINE Alu 1 292 -20 650 284 51 0 chr4 131530673 131530800 -70797547 - MIR3 SINE MIR -49 159 19 194 355 16 0 chr4 131530822 131530884 -70797463 - L2 LINE L2 -7 3265 3203 212 350 121 21 chr4 131530982 131531122 -70797225 - L2 LINE L2 -203 3069 2916 532 96 0 0 chr4 131531344 131531417 -70796930 - AluJ/FLAM SINE Alu -239 73 1 476 149 11 0 chr4 131532520 131532614 -70795733 + CT-rich Low_complexity Low_complexity 2 96 0 796 270 36 0 chr4 131532671 131532867 -70795480 + MIR SINE MIR 60 262 0 558 272 91 39 chr4 131533654 131533771 -70794576 - MIR SINE MIR -1 261 151 2144 112 0 16 chr4 131533771 131534084 -70794263 + AluSg SINE Alu 2 309 -1 558 272 91 39 chr4 131534084 131534198 -70794149 - MIR SINE MIR -111 151 18 365 279 162 30 chr4 131535019 131535221 -70793126 + L1MC/D LINE L1 5425 5649 -476 707 278 86 54 chr4 131535229 131536029 -70792318 - L1M4 LINE L1 -2057 4089 3252 1269 295 38 28 chr4 131536058 131536455 -70791892 - MER115 DNA AcHobo 0 693 293 402 277 14 40 chr4 131536540 131536688 -70791659 + L2 LINE L2 3170 3313 0 * 469 322 202 20 chr4 131536679 131536973 -70791374 - L2 LINE L2 -830 2484 2245 336 24 0 0 chr4 131536973 131537014 -70791333 + (GA)n Simple_repeat Simple_repeat 1 41 0 469 322 202 20 chr4 131537014 131537318 -70791029 - L2 LINE L2 -1069 2245 1777 191 352 14 0 chr4 131537495 131537566 -70790781 + L3b LINE CR1 1112 1183 -400 349 312 121 12 chr4 131537612 131537785 -70790562 + L3b LINE CR1 1277 1468 -115 204 318 63 24 chr4 131538901 131538992 -70789355 - L2 LINE L2 0 3313 3214 2394 126 69 12 chr4 131538992 131539397 -70788950 + MSTA LTR MaLR 1 428 0 204 318 63 24 chr4 131539397 131539431 -70788916 - L2 LINE L2 -99 3214 3183 430 214 0 0 chr4 131539461 131539545 -70788802 - MLT1K LTR MaLR 0 588 505 6738 62 5 0 chr4 131539819 131541217 -70787130 - L1PA8 LINE L1 0 6172 4758 410 298 84 6 chr4 131541331 131541509 -70786838 - L3b LINE CR1 -115 1468 1277 4778 72 8 0 chr4 131541518 131542156 -70786191 - L1P LINE L1 -1393 4753 4111 198 322 22 33 chr4 131543937 131544027 -70784320 - MIR3 SINE MIR -13 195 107 281 326 184 23 chr4 131544124 131544342 -70784005 - MIR SINE MIR -4 258 6 230 241 19 0 chr4 131544676 131544730 -70783617 - L2 LINE L2 0 3313 3259 300 53 0 0 chr4 131544754 131544792 -70783555 + (TG)n Simple_repeat Simple_repeat 1 38 0 845 290 125 45 chr4 131545376 131545841 -70782506 - MLT1J LTR MaLR -8 503 2 215 217 0 0 chr4 131548963 131549009 -70779338 + CT-rich Low_complexity Low_complexity 1 46 0 273 57 0 0 chr4 131549957 131549992 -70778355 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 4897 49 0 0 chr4 131549992 131550582 -70777765 - L1PA8 LINE L1 -24 6148 5559 478 187 0 11 chr4 131551576 131551667 -70776680 - MER5A DNA MER1_type -87 102 13 199 0 65 0 chr4 131552300 131552331 -70776016 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 6149 163 7 10 chr4 131552816 131554962 -70773385 - L1PB2 LINE L1 -2 6149 4009 1324 110 0 16 chr4 131554964 131555155 -70773192 - AluY SINE Alu -6 305 118 4568 142 12 3 chr4 131555255 131556324 -70772023 + L1P4 LINE L1 4565 5642 -521 * 9302 162 38 3 chr4 131556317 131559430 -70768917 + L1MB1 LINE L1 1393 4617 -2245 4765 210 35 48 chr4 131559530 131560952 -70767395 - L1 LINE L1 -2043 4103 2700 3300 189 27 30 chr4 131560953 131561661 -70766686 + L1MB1 LINE L1 6128 6835 -49 2219 123 3 0 chr4 131561661 131561963 -70766384 + AluSx SINE Alu 1 303 -9 3300 189 27 30 chr4 131561963 131562001 -70766346 + L1MB1 LINE L1 6835 6872 -12 655 279 12 6 chr4 131562283 131562444 -70765903 + MIR SINE MIR 18 179 -83 359 323 8 15 chr4 131562685 131562818 -70765529 + CT-rich Low_complexity Low_complexity 1 132 0 1304 262 107 10 chr4 131564119 131564520 -70763827 + LTR16A LTR ERVL 1 440 -10 343 311 17 25 chr4 131564537 131564656 -70763691 - MIR SINE MIR -61 201 84 28 29 0 0 chr4 131566463 131566498 -70761849 + AT_rich Low_complexity Low_complexity 1 35 0 321 262 57 25 chr4 131567443 131567565 -70760782 + MER103 DNA DNA 27 152 -14 230 206 79 0 chr4 131567748 131567811 -70760536 - MIR SINE MIR -125 137 70 542 333 50 9 chr4 131568616 131568835 -70759512 - MIR SINE MIR -34 228 1 29 0 0 0 chr4 131569264 131569293 -70759054 + AT_rich Low_complexity Low_complexity 1 29 0 446 368 70 42 chr4 131569331 131569514 -70758833 - L2 LINE L2 -12 3260 3084 2085 105 3 26 chr4 131569514 131569818 -70758529 + AluSq SINE Alu 5 301 -12 446 368 70 42 chr4 131569818 131569990 -70758357 - L2 LINE L2 -188 3084 2895 324 0 0 0 chr4 131571305 131571341 -70757006 + (CA)n Simple_repeat Simple_repeat 2 37 0 319 324 159 19 chr4 131577048 131577255 -70751092 - L3b LINE CR1 -228 1355 1120 23 0 0 0 chr4 131577447 131577470 -70750877 + AT_rich Low_complexity Low_complexity 1 23 0 2332 79 7 7 chr4 131578815 131579118 -70749229 + AluSc SINE Alu 1 303 -6 1053 268 160 73 chr4 131579704 131580277 -70748070 - MER77 LTR ERV1 -11 594 57 23 97 0 0 chr4 131580329 131580401 -70747946 + AT_rich Low_complexity Low_complexity 1 72 0 217 289 88 69 chr4 131580630 131580789 -70747558 - L2 LINE L2 -8 3305 3144 325 216 68 0 chr4 131581589 131581663 -70746684 - MIR SINE MIR -38 224 146 386 217 63 42 chr4 131581738 131581881 -70746466 + LTR37B LTR ERV1 6 151 -317 386 211 63 106 chr4 131581980 131582264 -70746083 + LTR37B LTR ERV1 197 468 0 1732 186 40 9 chr4 131582296 131582646 -70745701 - MLT1A1 LTR MaLR -4 361 1 2301 90 0 13 chr4 131582710 131583009 -70745338 - AluSx SINE Alu -17 295 1 1144 250 53 77 chr4 131583099 131583608 -70744739 - MLT1D LTR MaLR 0 487 1 415 243 22 81 chr4 131586122 131586258 -70742089 - L2 LINE L2 0 3313 3186 468 265 183 35 chr4 131586394 131586624 -70741723 - Zaphod DNA AcHobo -1 4030 3767 1573 294 62 21 chr4 131586650 131587211 -70741136 - Zaphod DNA AcHobo -3446 585 2 475 308 143 18 chr4 131587782 131588006 -70740341 - MIR SINE MIR -5 257 6 275 202 244 0 chr4 131588511 131588630 -70739717 - MLT1L LTR MaLR -8 607 460 332 260 63 47 chr4 131588794 131588921 -70739426 - MER69A DNA AcHobo -10 167 39 1383 203 102 32 chr4 131589217 131589650 -70738697 + MLT1C LTR MaLR 1 463 -4 2345 110 0 3 chr4 131590148 131590458 -70737889 - AluSx SINE Alu -3 309 1 192 40 0 0 chr4 131592251 131592276 -70736071 + (GA)n Simple_repeat Simple_repeat 1 25 0 594 284 70 12 chr4 131593460 131593703 -70734644 - MIR SINE MIR 0 262 6 445 297 55 8 chr4 131594154 131594340 -70734007 + MIR SINE MIR 13 206 -56 423 295 98 36 chr4 131594408 131594601 -70733746 + L2 LINE L2 3107 3311 -2 221 220 20 0 chr4 131594605 131594655 -70733692 + (TTA)n Simple_repeat Simple_repeat 3 53 0 263 228 59 153 chr4 131594750 131594884 -70733463 - MIR3 SINE MIR -10 198 88 2191 71 6 62 chr4 131594884 131595208 -70733139 + AluY SINE Alu 4 309 -2 263 228 59 153 chr4 131595208 131595275 -70733072 - MIR3 SINE MIR -120 88 16 24 0 0 0 chr4 131597768 131597792 -70730555 + AT_rich Low_complexity Low_complexity 1 24 0 367 300 84 34 chr4 131597894 131598251 -70730096 - L1ME4a LINE L1 -158 5963 5589 30 0 0 0 chr4 131599288 131599318 -70729029 + AT_rich Low_complexity Low_complexity 1 30 0 345 309 45 81 chr4 131600260 131600483 -70727864 - MIR SINE MIR -10 252 38 33 0 0 0 chr4 131601118 131601151 -70727196 + AT_rich Low_complexity Low_complexity 1 33 0 1164 145 113 121 chr4 131601760 131602042 -70726305 - AluJb SINE Alu -27 285 6 4836 211 118 108 chr4 131602225 131604147 -70724200 + L1MCa LINE L1 3 1957 -4469 1985 202 137 67 chr4 131604147 131604919 -70723428 - LTR1B LTR ERV1 0 826 1 4836 211 118 108 chr4 131604919 131605447 -70722900 + L1MCa LINE L1 1957 2478 -3948 559 225 140 50 chr4 131605468 131605668 -70722679 - MLT1J2 LTR MaLR 0 450 233 240 323 30 20 chr4 131606115 131606214 -70722133 + L2 LINE L2 2258 2357 -957 412 282 179 0 chr4 131606375 131606744 -70721603 + L1MCa LINE L1 2424 2858 -3568 210 143 0 0 chr4 131606802 131606837 -70721510 + (TA)n Simple_repeat Simple_repeat 2 36 0 366 308 76 48 chr4 131606838 131607088 -70721259 + L1MCa LINE L1 2925 3181 -3245 483 293 226 19 chr4 131607119 131607327 -70721020 - MIR SINE MIR 0 262 12 336 263 49 45 chr4 131607346 131607589 -70720758 + L1MCa LINE L1 3211 3454 -2972 295 77 19 19 chr4 131607615 131607667 -70720680 + (CATTT)n Simple_repeat Simple_repeat 3 54 0 1880 159 7 0 chr4 131607668 131607969 -70720378 - AluJo SINE Alu -7 305 3 24 0 0 0 chr4 131608034 131608058 -70720289 + AT_rich Low_complexity Low_complexity 1 24 0 245 319 127 24 chr4 131608137 131608475 -70719872 + L1MCa LINE L1 3668 4040 -2386 1459 206 74 30 chr4 131608509 131608916 -70719431 - Charlie7 DNA MER1_type -684 1928 1504 219 320 102 16 chr4 131610004 131610148 -70718199 + MIR SINE MIR 39 192 -64 2012 121 14 0 chr4 131610621 131610903 -70717444 - AluSg SINE Alu -24 286 1 2394 121 111 5 chr4 131611541 131611928 -70716419 + MSTA LTR MaLR 1 428 0 24 0 0 0 chr4 131614018 131614042 -70714305 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr4 131616115 131616149 -70712198 + AT_rich Low_complexity Low_complexity 1 34 0 25 75 0 0 chr4 131616386 131616439 -70711908 + AT_rich Low_complexity Low_complexity 1 53 0 180 111 0 0 chr4 131617316 131617343 -70711004 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr4 131617781 131617802 -70710545 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 131618611 131618639 -70709708 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr4 131619768 131619791 -70708556 + (T)n Simple_repeat Simple_repeat 1 23 0 2249 119 3 0 chr4 131620216 131620527 -70707820 + AluSp SINE Alu 1 312 -1 834 61 61 0 chr4 131620534 131620649 -70707698 + L1PA8 LINE L1 6046 6167 -5 22 0 0 0 chr4 131620778 131620800 -70707547 + AT_rich Low_complexity Low_complexity 1 22 0 279 264 108 84 chr4 131621869 131622036 -70706311 - MER21A LTR ERV1 -353 578 408 390 281 105 0 chr4 131622791 131622905 -70705442 - MER91A DNA MER1_type -22 174 49 247 292 25 58 chr4 131623859 131623979 -70704368 - MIR SINE MIR -127 135 20 256 309 107 0 chr4 131624581 131624665 -70703682 + L2 LINE L2 3221 3313 0 651 263 0 0 chr4 131625615 131625752 -70702595 + Tigger3(Golem) DNA MER2_type 6 142 -2887 * 1327 152 138 0 chr4 131625750 131625974 -70702373 + Tigger3(Golem) DNA MER2_type 2782 3036 0 2339 148 51 17 chr4 131626317 131626730 -70701617 + MSTA LTR MaLR 1 427 -1 23 68 0 0 chr4 131627516 131627560 -70700787 + AT_rich Low_complexity Low_complexity 1 44 0 3169 143 26 9 chr4 131627813 131628381 -70699966 + L1MB3 LINE L1 5603 6180 -3 278 276 88 105 chr4 131628431 131628532 -70699815 - MIR3 SINE MIR -24 238 137 2369 104 7 0 chr4 131628532 131628840 -70699507 + AluSx SINE Alu 1 310 -2 278 276 88 105 chr4 131628840 131628951 -70699396 - MIR3 SINE MIR -125 137 8 30 27 0 0 chr4 131632735 131632772 -70695575 + AT_rich Low_complexity Low_complexity 1 37 0 228 162 0 0 chr4 131633381 131633418 -70694929 + MADE1 DNA Mariner 42 78 -2 1973 117 11 7 chr4 131635242 131635516 -70692831 + AluSx SINE Alu 19 293 -19 22 80 0 0 chr4 131635607 131635657 -70692690 + AT_rich Low_complexity Low_complexity 1 50 0 240 35 0 0 chr4 131636906 131636935 -70691412 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 398 158 21 0 chr4 131637727 131637822 -70690525 + Charlie5 DNA MER1_type 2448 2544 -68 2632 166 37 3 chr4 131637826 131638647 -70689700 + L1PA16 LINE L1 4886 5736 -430 3069 136 29 69 chr4 131638647 131639241 -70689106 + LTR8 LTR ERV1 1 570 -121 264 118 0 78 chr4 131639241 131639292 -70689055 + L1PA16 LINE L1 5746 5792 -374 272 167 14 0 chr4 131639309 131639381 -70688966 + (TA)n Simple_repeat Simple_repeat 2 74 0 303 247 71 12 chr4 131639381 131639466 -70688881 + L1MC4 LINE L1 6614 6703 -1339 2157 148 30 0 chr4 131639467 131639832 -70688515 + L1PA16 LINE L1 5782 6157 -9 267 169 0 0 chr4 131639842 131639901 -70688446 + Charlie5 DNA MER1_type 2492 2550 -62 783 196 52 0 chr4 131639913 131640066 -70688281 - MER119 DNA MER1_type -253 330 170 660 314 84 51 chr4 131640224 131640748 -70687599 - L2 LINE L2 -2 3311 2766 278 250 0 0 chr4 131640769 131640825 -70687522 + L2 LINE L2 3214 3269 -3 2207 155 59 29 chr4 131641034 131641547 -70686800 + MLT2A2 LTR ERVL 1 554 0 274 234 31 16 chr4 131641867 131641931 -70686416 + MLT1D LTR MaLR 1 65 -440 245 203 85 17 chr4 131641940 131641999 -70686348 + L2 LINE L2 3003 3065 -248 1877 206 44 25 chr4 131642001 131642433 -70685914 + MLT1D LTR MaLR 66 505 0 2141 105 31 0 chr4 131642805 131643099 -70685248 - AluSx SINE Alu -9 303 1 2037 169 8 30 chr4 131643145 131643518 -70684829 + MLT1A1 LTR MaLR 1 365 0 3557 179 76 21 chr4 131643547 131644307 -70684040 + L1MA10 LINE L1 5525 6326 -8 1978 144 36 28 chr4 131644828 131645189 -70683158 + THE1B LTR MaLR 1 364 0 1161 184 0 37 chr4 131645549 131645766 -70682581 + AluJo SINE Alu 82 290 -22 22 35 0 0 chr4 131647863 131647892 -70680455 + AT_rich Low_complexity Low_complexity 1 29 0 396 186 35 0 chr4 131648978 131649064 -70679283 + L1ME3 LINE L1 6072 6160 -2 35 41 0 0 chr4 131649938 131649987 -70678360 + AT_rich Low_complexity Low_complexity 1 49 0 2262 81 3 0 chr4 131650700 131650997 -70677350 + MER41A-int LTR ERV1 5647 5944 -2 3403 101 4 0 chr4 131650997 131651463 -70676884 + MER41A LTR ERV1 1 468 -86 883 263 78 17 chr4 131652164 131652396 -70675951 - MIR SINE MIR -10 252 7 181 382 0 29 chr4 131654012 131654114 -70674233 + L2 LINE L2 2925 3023 -249 245 280 121 50 chr4 131654210 131654392 -70673955 + L2 LINE L2 3119 3313 0 1403 69 0 0 chr4 131654549 131654724 -70673623 - AluY SINE Alu -7 304 130 893 239 104 75 chr4 131655005 131655303 -70673044 + MSTD LTR MaLR 1 314 -82 2195 113 3 3 chr4 131655303 131655612 -70672735 + AluSg SINE Alu 1 309 -1 893 239 104 75 chr4 131655612 131655698 -70672649 + MSTD LTR MaLR 314 396 0 23 33 0 0 chr4 131655986 131656016 -70672331 + AT_rich Low_complexity Low_complexity 1 30 0 300 369 96 21 chr4 131656189 131656376 -70671971 - L3 LINE CR1 -102 1475 1275 185 333 189 0 chr4 131656458 131656548 -70671799 - L2 LINE L2 -4 3268 3162 371 336 66 42 chr4 131656650 131657249 -70671098 - L2 LINE L2 -191 3081 2472 403 293 23 23 chr4 131657444 131657618 -70670729 - L2 LINE L2 -1173 2141 1968 1451 321 18 6 chr4 131659224 131659728 -70668619 - MLT1J LTR MaLR -1 510 1 2276 114 0 3 chr4 131660099 131660406 -70667941 + AluSx SINE Alu 3 308 -4 669 176 47 24 chr4 131660843 131661013 -70667334 - MER53 DNA DNA -8 181 8 426 211 24 41 chr4 131661038 131661171 -70667176 + MLT1H LTR MaLR 37 165 -384 382 312 45 0 chr4 131661186 131661340 -70667007 + MLT1H LTR MaLR 389 549 0 240 222 0 56 chr4 131661723 131661795 -70666552 - Zaphod DNA AcHobo -37 3994 3927 2218 81 3 48 chr4 131662269 131662578 -70665769 + AluSc SINE Alu 1 295 -14 233 318 106 23 chr4 131663099 131663231 -70665116 - L2 LINE L2 0 3313 3171 1806 151 178 8 chr4 131663858 131664223 -70664124 + MSTA LTR MaLR 1 427 -1 10036 128 4 34 chr4 131664226 131665852 -70662495 + MSTA-int LTR MaLR 3 1580 0 1336 157 242 39 chr4 131665852 131666208 -70662139 + MSTA LTR MaLR 1 428 0 1862 235 60 34 chr4 131666461 131666993 -70661354 - MER74A LTR ERVL 0 558 13 922 243 32 9 chr4 131667582 131667800 -70660547 + MER58A DNA MER1_type 1 223 -1 358 192 90 23 chr4 131668458 131668635 -70659712 + L1M4 LINE L1 3073 3261 -2885 790 153 20 0 chr4 131668674 131668824 -70659523 + L1MB4 LINE L1 6027 6179 -1 450 66 26 0 chr4 131669009 131669085 -70659262 + L1MB4 LINE L1 6102 6179 -1 1804 267 90 17 chr4 131669722 131670305 -70658042 - MLT1G LTR MaLR 0 590 1 322 321 60 87 chr4 131670836 131671094 -70657253 - L2 LINE L2 0 3313 3049 2287 53 0 7 chr4 131671094 131671378 -70656969 + AluY SINE Alu 29 310 -1 322 321 60 87 chr4 131671378 131671687 -70656660 - L2 LINE L2 -264 3049 2646 248 371 72 55 chr4 131671921 131672282 -70656065 + L2 LINE L2 2906 3272 0 21 36 0 0 chr4 131672440 131672468 -70655879 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr4 131672853 131672897 -70655450 + AT_rich Low_complexity Low_complexity 1 44 0 614 266 189 6 chr4 131724460 131724772 -70603575 - MLT1J1 LTR MaLR -10 436 68 553 249 117 9 chr4 131726765 131726978 -70601369 + MER20B DNA MER1_type 70 305 -478 1757 223 147 64 chr4 131727010 131727556 -70600791 - MLT1E1 LTR MaLR -8 646 56 813 243 73 1 chr4 131727597 131727950 -70600397 + MER20B DNA MER1_type 331 742 -41 1877 107 0 4 chr4 131727988 131728260 -70600087 + L1P5 LINE L1 5321 5591 -560 12180 125 5 7 chr4 131728360 131730293 -70598054 - L1P LINE L1 -1140 5006 3079 844 244 78 31 chr4 131730398 131730656 -70597691 - LTR16C LTR ERVL -1 490 221 322 244 6 35 chr4 131731875 131732047 -70596300 + GA-rich Low_complexity Low_complexity 4 170 0 1401 146 5 10 chr4 131732193 131732399 -70595948 - AluSq SINE Alu -108 205 1 7031 23 0 0 chr4 131732453 131733291 -70595056 - L1HS LINE L1 -743 5403 4566 6722 12 0 0 chr4 131733289 131734048 -70594299 + L1HS LINE L1 5392 6150 -5 * 24 0 0 0 chr4 131734048 131734072 -70594275 + AT_rich Low_complexity Low_complexity 1 24 0 455 267 149 6 chr4 131734148 131734309 -70594038 - MIR SINE MIR -6 256 73 1356 249 51 59 chr4 131734314 131734592 -70593755 - MLT1D LTR MaLR 0 505 226 2554 105 11 24 chr4 131734592 131734972 -70593375 + THE1C LTR MaLR 1 375 0 1356 249 51 59 chr4 131734972 131735055 -70593292 - MLT1D LTR MaLR -279 226 144 1892 176 15 48 chr4 131735055 131735452 -70592895 - MLT1B LTR MaLR -4 386 3 1356 249 51 59 chr4 131735452 131735598 -70592749 - MLT1D LTR MaLR -361 144 1 204 125 0 0 chr4 131735771 131735803 -70592544 + (TA)n Simple_repeat Simple_repeat 2 33 0 249 33 0 0 chr4 131735805 131735835 -70592512 + (TG)n Simple_repeat Simple_repeat 1 30 0 191 376 21 32 chr4 131735835 131736021 -70592326 - L2 LINE L2 -567 2747 2564 37 23 0 0 chr4 131737278 131737322 -70591025 + AT_rich Low_complexity Low_complexity 1 44 0 762 151 50 0 chr4 131737322 131737441 -70590906 - AluSg SINE Alu -185 125 1 24 32 0 0 chr4 131737441 131737472 -70590875 + AT_rich Low_complexity Low_complexity 1 31 0 1584 146 65 3 chr4 131737476 131737784 -70590563 - L1MA8 LINE L1 -6 6285 5959 1534 180 7 39 chr4 131737817 131738123 -70590224 - AluJb SINE Alu -16 296 1 1433 218 112 7 chr4 131738125 131738483 -70589864 - MSTD LTR MaLR -1 456 1 1777 105 10 44 chr4 131738484 131738780 -70589567 - L1MA8 LINE L1 -363 5928 5643 304 250 26 0 chr4 131738783 131738859 -70589488 + L1MC4 LINE L1 6614 6691 -1351 1564 200 33 33 chr4 131738985 131739350 -70588997 + MLT1A1 LTR MaLR 1 365 0 403 241 128 30 chr4 131740798 131740931 -70587416 + MIR SINE MIR 117 262 0 182 61 0 30 chr4 131741071 131741104 -70587243 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 550 297 36 41 chr4 131741104 131741299 -70587048 - L2 LINE L2 -17 3296 3103 759 179 39 11 chr4 131741325 131741504 -70586843 + MER53 DNA DNA 6 189 0 300 268 16 49 chr4 131742417 131742540 -70585807 + GA-rich Low_complexity Low_complexity 4 122 0 243 0 0 0 chr4 131743888 131743915 -70584432 + (CTA)n Simple_repeat Simple_repeat 1 27 0 215 194 0 0 chr4 131743926 131743962 -70584385 + (TG)n Simple_repeat Simple_repeat 2 37 0 1284 196 9 0 chr4 131743963 131744188 -70584159 - AluJb SINE Alu -24 288 62 2042 109 4 0 chr4 131744232 131744506 -70583841 - AluSx SINE Alu -16 296 22 257 296 99 0 chr4 131745780 131745851 -70582496 - L2 LINE L2 -1 3312 3235 3103 133 4 2 chr4 131746001 131746522 -70581825 + L1P LINE L1 4899 5420 -749 367 295 89 39 chr4 131746563 131747303 -70581044 - L1MEc LINE L1 -3323 2892 2152 26 0 0 0 chr4 131748183 131748209 -70580138 + AT_rich Low_complexity Low_complexity 1 26 0 353 303 148 45 chr4 131748337 131748492 -70579855 - MIR3 SINE MIR 0 208 38 186 321 0 0 chr4 131748663 131748716 -70579631 - L2 LINE L2 -43 3229 3177 535 302 157 8 chr4 131748939 131749181 -70579166 - L2 LINE L2 -497 2817 2540 537 260 119 27 chr4 131749252 131749471 -70578876 + MLT1H LTR MaLR 68 306 -243 487 275 7 0 chr4 131749533 131749671 -70578676 + MLT1H LTR MaLR 410 548 -1 225 0 0 0 chr4 131749729 131749754 -70578593 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr4 131751063 131751084 -70577263 + AT_rich Low_complexity Low_complexity 1 21 0 3896 102 22 12 chr4 131752176 131752775 -70575572 + L1PB1 LINE L1 5545 6149 -2 231 229 0 0 chr4 131753298 131753359 -70574988 + CT-rich Low_complexity Low_complexity 2 62 0 370 305 234 4 chr4 131754445 131754736 -70573611 + L2 LINE L2 2696 3050 -263 1474 161 95 46 chr4 131754737 131755085 -70573262 - MLT1A1 LTR MaLR 0 365 1 323 103 0 17 chr4 131755207 131755265 -70573082 + (TATG)n Simple_repeat Simple_repeat 2 58 0 29 0 0 0 chr4 131758935 131758964 -70569383 + AT_rich Low_complexity Low_complexity 1 29 0 244 182 36 0 chr4 131759253 131759308 -70569039 - MER116 DNA Mariner -17 63 7 558 114 0 0 chr4 131760274 131760362 -70567985 + (TCCA)n Simple_repeat Simple_repeat 2 89 0 265 351 127 19 chr4 131760915 131761120 -70567227 + MIR SINE MIR 20 246 -16 1131 208 46 91 chr4 131761850 131762475 -70565872 + MER52A LTR ERV1 437 761 -259 367 278 316 48 chr4 131762525 131762946 -70565401 + MER52A LTR ERV1 1222 1755 0 319 234 114 82 chr4 131763031 131763234 -70565113 - L1MEd LINE L1 -2852 3277 3057 2376 71 0 3 chr4 131763234 131763530 -70564817 + AluY SINE Alu 1 295 -16 319 234 114 82 chr4 131763530 131763668 -70564679 - L1MEd LINE L1 -3072 3057 2925 351 281 82 25 chr4 131764416 131764612 -70563735 - L1MEd LINE L1 -3735 2394 2188 665 236 100 25 chr4 131764904 131765184 -70563163 - L1MC4a LINE L1 -1915 5893 5593 1979 211 17 38 chr4 131765304 131765778 -70562569 + MLT1D LTR MaLR 25 488 -17 305 212 24 12 chr4 131765930 131766015 -70562332 + HsTC2 DNA Tc2 2 87 -1811 327 284 25 0 chr4 131766031 131766112 -70562235 - L1MEd LINE L1 -5496 623 541 348 306 50 64 chr4 131766153 131766372 -70561975 - L1MEd LINE L1 -5581 538 323 2176 227 37 118 chr4 131766746 131767932 -70560415 - HAL1 LINE L1 -687 1820 731 539 319 47 41 chr4 131767944 131768282 -70560065 - HAL1 LINE L1 -1953 554 215 7987 137 35 4 chr4 131769349 131770401 -70557946 - L1P LINE L1 -1837 4309 3204 225 0 0 0 chr4 131770401 131770426 -70557921 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 7987 137 35 4 chr4 131770426 131770727 -70557620 - L1P LINE L1 -2942 3204 2914 281 240 20 10 chr4 131770725 131770825 -70557522 + L1ME1 LINE L1 3844 3944 -2202 * 2112 106 0 23 chr4 131771030 131771331 -70557016 + AluSc SINE Alu 7 300 -9 318 258 57 43 chr4 131771370 131771579 -70556768 + L1ME1 LINE L1 5263 5474 -2334 287 316 116 13 chr4 131771821 131771976 -70556371 + MIR SINE MIR 57 227 -35 3464 205 171 9 chr4 131772201 131773079 -70555268 - LTR28 LTR ERV1 0 1020 1 1025 271 49 67 chr4 131773086 131773636 -70554711 + L2 LINE L2 2781 3313 0 4226 120 9 5 chr4 131774091 131774723 -70553624 + MER41B LTR ERV1 1 635 0 22 0 0 0 chr4 131774923 131774945 -70553402 + AT_rich Low_complexity Low_complexity 1 22 0 1280 141 69 3 chr4 131775934 131776174 -70552173 - L1M2 LINE L1 -661 5630 5383 389 91 0 15 chr4 131776152 131776218 -70552129 - L1M2 LINE L1 -1856 4290 4226 * 395 215 168 7 chr4 131776225 131776374 -70551973 - L1ME LINE L1 -516 5646 5474 21 71 0 0 chr4 131776580 131776622 -70551725 + AT_rich Low_complexity Low_complexity 1 42 0 192 40 0 0 chr4 131776803 131776828 -70551519 + (CAGAGA)n Simple_repeat Simple_repeat 2 26 0 22 70 0 0 chr4 131778115 131778158 -70550189 + AT_rich Low_complexity Low_complexity 1 43 0 311 326 74 25 chr4 131778449 131778691 -70549656 + MLT1H LTR MaLR 26 279 -270 639 289 58 0 chr4 131779421 131779594 -70548753 + MLT1J2 LTR MaLR 3 185 -265 304 282 26 17 chr4 131780559 131780676 -70547671 - MER97c DNA MER1_type? -3 1087 970 313 258 16 16 chr4 131780717 131780845 -70547502 + A-rich Low_complexity Low_complexity 2 129 0 309 280 37 0 chr4 131780942 131781049 -70547298 - MER97b DNA MER1_type? -194 859 749 1368 201 51 3 chr4 131781049 131781342 -70547005 + L1ME1 LINE L1 5579 5885 -281 * 4544 223 16 9 chr4 131781332 131782661 -70545686 + L1PA15-16 LINE L1 1887 3219 -3630 888 178 0 33 chr4 131782661 131782837 -70545510 + L1PA15 LINE L1 5988 6161 -4 346 333 22 19 chr4 131782898 131783168 -70545179 + L1 LINE L1 4330 4600 -1546 25 31 0 0 chr4 131783517 131783549 -70544798 + AT_rich Low_complexity Low_complexity 1 32 0 230 182 18 36 chr4 131790305 131790360 -70537987 + GA-rich Low_complexity Low_complexity 4 57 0 25 31 0 0 chr4 131790765 131790797 -70537550 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr4 131791938 131791962 -70536385 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr4 131792034 131792061 -70536286 + AT_rich Low_complexity Low_complexity 1 27 0 373 349 30 45 chr4 131793278 131793476 -70534871 + MIR SINE MIR 3 197 -65 6520 203 45 51 chr4 131793702 131796817 -70531530 - L1MB2 LINE L1 0 6171 2350 26 64 0 0 chr4 131796838 131796885 -70531462 + AT_rich Low_complexity Low_complexity 1 47 0 287 181 83 56 chr4 131799449 131799521 -70528826 + L2 LINE L2 3238 3311 -2 37744 86 7 9 chr4 131800179 131806345 -70522002 + L1PA6 LINE L1 2 6153 -1 207 240 20 0 chr4 131806604 131806654 -70521693 - L3b LINE CR1 -117 1466 1416 198 191 0 0 chr4 131806693 131806740 -70521607 + CT-rich Low_complexity Low_complexity 1 47 0 407 192 0 0 chr4 131806744 131806817 -70521530 - MLT1B LTR MaLR 0 390 318 * 432 168 224 24 chr4 131806815 131806940 -70521407 - MLT1B LTR MaLR -240 150 1 402 296 105 13 chr4 131806941 131807093 -70521254 + MIR SINE MIR 31 196 -66 397 323 60 8 chr4 131807237 131807370 -70520977 - L2 LINE L2 -1 3271 3132 2677 157 28 2 chr4 131807985 131808444 -70519903 + Tigger1 DNA MER2_type 1 471 -1947 217 337 20 20 chr4 131808638 131808736 -70519611 - MIR SINE MIR -140 122 25 7121 53 6 1 chr4 131811812 131813437 -70514910 - L1PA5 LINE L1 0 6154 4523 4662 97 0 1 chr4 131814442 131815095 -70513252 - L1P LINE L1 -4820 1326 675 1615 48 0 9 chr4 131815095 131815305 -70513042 + L1PA5 LINE L1 5947 6154 0 459 297 0 23 chr4 131815404 131815532 -70512815 - MIR SINE MIR -115 147 23 211 250 19 0 chr4 131815567 131815619 -70512728 - MER5A DNA MER1_type -78 111 59 1811 160 21 50 chr4 131816438 131816814 -70511533 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr4 131817395 131817416 -70510931 + AT_rich Low_complexity Low_complexity 1 21 0 252 59 0 0 chr4 131818172 131818206 -70510141 + (TG)n Simple_repeat Simple_repeat 1 34 0 944 212 49 0 chr4 131819511 131819695 -70508652 - MER20B DNA MER1_type -26 193 1 231 114 0 0 chr4 131819962 131819997 -70508350 + (CA)n Simple_repeat Simple_repeat 2 36 0 3133 268 71 43 chr4 131820053 131821658 -70506689 + L1ME LINE L1 1952 3585 -2630 2189 121 0 3 chr4 131821658 131821965 -70506382 + AluSq SINE Alu 1 306 -7 3133 268 71 43 chr4 131821965 131822264 -70506083 + L1ME LINE L1 3585 3874 -2341 252 254 17 0 chr4 131822722 131822781 -70505566 - MIR SINE MIR -91 171 112 251 335 64 26 chr4 131823314 131823627 -70504720 + L1ME LINE L1 5571 5895 -295 225 95 63 32 chr4 131824244 131824307 -70504040 + (TA)n Simple_repeat Simple_repeat 1 65 0 2086 154 156 58 chr4 131824325 131824889 -70503458 - LTR1B LTR ERV1 -207 619 1 195 273 136 23 chr4 131826888 131826976 -70501371 - MIR3 SINE MIR -23 185 88 21 0 0 0 chr4 131827004 131827025 -70501322 + AT_rich Low_complexity Low_complexity 1 21 0 535 338 45 66 chr4 131828928 131829593 -70498754 + L1MEd LINE L1 3 653 -5466 349 309 38 56 chr4 131830557 131830788 -70497559 - HAL1 LINE L1 -963 1544 1319 801 221 63 88 chr4 131830788 131831199 -70497148 + MER57A LTR ERV1 1 401 -2 349 309 38 56 chr4 131831199 131831307 -70497040 - HAL1 LINE L1 -1188 1319 1211 1049 188 22 5 chr4 131832630 131832853 -70495494 - MER96B DNA MER1_type? -189 228 2 236 299 93 31 chr4 131833218 131833509 -70494838 - HAL1 LINE L1 -1190 1317 1009 29 60 0 0 chr4 131833521 131833571 -70494776 + AT_rich Low_complexity Low_complexity 1 50 0 228 317 0 49 chr4 131833582 131833596 -70494751 - L2 LINE L2 -208 3064 3051 2300 194 127 50 chr4 131833596 131834363 -70493984 + LTR1B LTR ERV1 1 826 0 228 317 0 49 chr4 131834363 131834430 -70493917 - L2 LINE L2 -221 3051 2987 2089 111 4 0 chr4 131835596 131835876 -70492471 - AluSp SINE Alu -30 283 3 347 190 70 20 chr4 131836123 131836223 -70492124 + MIR SINE MIR 96 200 -62 335 240 29 10 chr4 131837036 131837140 -70491207 + MER103 DNA DNA 4 109 -57 25 0 0 0 chr4 131838661 131838686 -70489661 + AT_rich Low_complexity Low_complexity 1 25 0 1578 164 20 34 chr4 131838692 131838990 -70489357 - MLT1B LTR MaLR 0 390 97 31 0 0 0 chr4 131839462 131839493 -70488854 + AT_rich Low_complexity Low_complexity 1 31 0 1725 243 114 38 chr4 131839676 131840227 -70488120 - MLT1E LTR MaLR 0 593 1 1684 230 73 9 chr4 131840782 131841375 -70486972 + MER20B DNA MER1_type 119 783 0 485 320 27 0 chr4 131841405 131841552 -70486795 + MER20B DNA MER1_type 98 248 -535 284 232 60 80 chr4 131841802 131841953 -70486394 + MIR SINE MIR 74 221 -41 45 34 0 0 chr4 131842014 131842073 -70486274 + AT_rich Low_complexity Low_complexity 1 59 0 2297 211 19 21 chr4 131842077 131842599 -70485748 + MER63 DNA MER1_type 541 1061 0 550 303 51 0 chr4 131842601 131842835 -70485512 + L1M4 LINE L1 3805 4050 -2096 23 0 0 0 chr4 131842984 131843007 -70485340 + AT_rich Low_complexity Low_complexity 1 23 0 1554 142 28 16 chr4 131843067 131843314 -70485033 + AluSp SINE Alu 1 250 -63 26 50 0 0 chr4 131843892 131843932 -70484415 + AT_rich Low_complexity Low_complexity 1 40 0 229 219 27 0 chr4 131844065 131844138 -70484209 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 22 56 0 0 chr4 131844373 131844409 -70483938 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr4 131844480 131844513 -70483834 + AT_rich Low_complexity Low_complexity 1 33 0 11529 124 20 5 chr4 131845367 131847152 -70481195 - Tigger1 DNA MER2_type -16 2402 590 25 65 0 0 chr4 131849504 131849550 -70478797 + AT_rich Low_complexity Low_complexity 1 46 0 2253 104 0 0 chr4 131850979 131851278 -70477069 - AluSg SINE Alu -11 299 1 966 167 11 0 chr4 131852225 131852418 -70475929 - L1M2 LINE L1 -496 5667 5505 1534 196 14 7 chr4 131852477 131852753 -70475594 - MLT2B2 LTR ERVL -237 278 1 231 36 0 0 chr4 131854423 131854451 -70473896 + (TG)n Simple_repeat Simple_repeat 2 29 0 273 29 0 0 chr4 131854614 131854648 -70473699 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 22930 167 30 22 chr4 131855546 131861887 -70466460 - L1PA10 LINE L1 0 6483 6 217 302 93 72 chr4 131862881 131863020 -70465327 - MIR SINE MIR -30 232 91 1785 125 4 15 chr4 131863394 131863658 -70464689 - AluSc SINE Alu -14 295 35 3576 187 16 11 chr4 131863680 131864407 -70463940 - L1MA9 LINE L1 -38 6274 5544 2450 176 13 22 chr4 131864441 131864902 -70463445 + MSTB2 LTR MaLR 1 457 0 220 385 86 14 chr4 131864932 131865283 -70463064 + L2 LINE L2 431 806 -2508 305 338 96 45 chr4 131865369 131865506 -70462841 + L2 LINE L2 1978 2107 -1207 1648 172 11 46 chr4 131865506 131865878 -70462469 - L1MA10 LINE L1 -1 6333 5975 305 338 96 45 chr4 131865878 131866054 -70462293 + L2 LINE L2 2107 2307 -1007 271 307 134 22 chr4 131867190 131867369 -70460978 - L2 LINE L2 -2 3311 3113 1199 289 48 75 chr4 131867409 131868138 -70460209 - L2 LINE L2 -420 2894 2186 214 273 0 26 chr4 131868493 131868563 -70459784 + G-rich Low_complexity Low_complexity 1 68 0 23 0 0 0 chr4 131868718 131868741 -70459606 + AT_rich Low_complexity Low_complexity 1 23 0 1747 202 52 60 chr4 131868903 131869407 -70458940 - MLT1D LTR MaLR 0 505 6 894 271 21 25 chr4 131872188 131872428 -70455919 - MIR SINE MIR 0 262 24 215 334 169 43 chr4 131872543 131873618 -70454729 + L2 LINE L2 1741 2951 -363 302 289 0 0 chr4 131873871 131873954 -70454393 - MIR SINE MIR -114 148 66 1581 264 59 34 chr4 131874251 131874819 -70453528 + MLT1E LTR MaLR 6 585 -8 22 0 0 0 chr4 131877037 131877059 -70451288 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 131877523 131877546 -70450801 + AT_rich Low_complexity Low_complexity 1 23 0 1868 152 92 0 chr4 131877775 131878110 -70450237 - MER47A DNA MER2_type 0 366 1 3162 185 37 11 chr4 131880259 131880901 -70447446 + MER67B LTR ERV1 1 659 -2 2586 110 3 0 chr4 131881619 131881973 -70446374 - THE1A LTR MaLR 0 355 1 281 322 68 8 chr4 131882878 131882996 -70445351 + MIR SINE MIR 103 227 -35 24 32 0 0 chr4 131884150 131884181 -70444166 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 131884267 131884290 -70444057 + AT_rich Low_complexity Low_complexity 1 23 0 244 180 0 0 chr4 131884399 131884449 -70443898 - MER53 DNA DNA -126 63 14 410 110 96 0 chr4 131884449 131884522 -70443825 - MADE1 DNA Mariner 0 80 1 307 312 83 69 chr4 131884570 131884952 -70443395 - L2 LINE L2 -249 3023 2628 286 234 28 50 chr4 131885141 131885282 -70443065 + MER112 DNA MER1_type 65 202 -58 24 0 0 0 chr4 131885310 131885334 -70443013 + AT_rich Low_complexity Low_complexity 1 24 0 344 318 68 42 chr4 131885345 131885581 -70442766 + L1M3c LINE L1 173 565 -5738 786 148 25 0 chr4 131885677 131885799 -70442548 - MSTA LTR MaLR 0 428 304 231 129 0 0 chr4 131885905 131885936 -70442411 + L1M3c LINE L1 1001 1031 -5272 3464 231 142 44 chr4 131886033 131887593 -70440754 + L1M3c LINE L1 804 2429 -3953 1327 206 45 31 chr4 131887593 131887885 -70440462 + AluJo SINE Alu 3 298 -14 3464 231 142 44 chr4 131887885 131888000 -70440347 + L1M3c LINE L1 2429 2531 -3851 10487 175 7 24 chr4 131888044 131889060 -70439287 + L1P3 LINE L1 2 1033 -5428 186 103 0 0 chr4 131889060 131889089 -70439258 + (CAA)n Simple_repeat Simple_repeat 2 30 0 10487 175 7 24 chr4 131889089 131891029 -70437318 + L1P3 LINE L1 1033 3200 -3261 2483 136 49 0 chr4 131991083 131991489 -70336858 - MSTB LTR MaLR 0 426 1 2511 48 0 6 chr4 131991808 131992120 -70336227 - AluY SINE Alu -1 310 1 288 237 0 54 chr4 131992323 131992416 -70335931 + MLT1L LTR MaLR 425 512 -103 757 302 127 24 chr4 131992842 131993305 -70335042 - LTR33 LTR ERVL 0 521 11 5354 152 20 12 chr4 131993859 131994773 -70333574 - MER49 LTR ERV1 0 923 3 253 318 27 0 chr4 131995329 131995439 -70332908 + MER94 DNA DNA 16 128 -6 2377 28 3 0 chr4 131995503 131995786 -70332561 - L1PA3 LINE L1 0 6155 5872 * 10401 29 2 1 chr4 131995784 131997793 -70330554 + L1PA4 LINE L1 4147 6155 0 1517 218 0 3 chr4 131997904 131998198 -70330149 - AluJb SINE Alu -8 304 12 22 56 0 0 chr4 131998515 131998551 -70329796 + AT_rich Low_complexity Low_complexity 1 36 0 2243 119 0 0 chr4 131999339 131999641 -70328706 + AluSg SINE Alu 1 302 -8 309 336 154 37 chr4 131999810 132000134 -70328213 + L2 LINE L2 2911 3272 0 246 277 40 40 chr4 132000149 132000250 -70328097 + MIR3 SINE MIR 98 198 -10 2127 99 7 14 chr4 132002005 132002299 -70326048 + AluSp SINE Alu 4 295 -18 251 382 51 19 chr4 132002881 132003038 -70325309 - MIR3 SINE MIR -15 193 32 180 146 73 0 chr4 132003162 132003203 -70325144 - L2 LINE L2 -2 3311 3268 2331 60 3 0 chr4 132003693 132003977 -70324370 - AluSx SINE Alu -15 297 13 242 315 64 30 chr4 132004491 132004694 -70323653 + L2 LINE L2 2947 3156 -157 252 236 0 0 chr4 132004694 132004749 -70323598 + (TGAA)n Simple_repeat Simple_repeat 2 56 0 774 176 12 18 chr4 132004869 132005034 -70323313 - L1MA5 LINE L1 0 6300 6137 521 185 281 14 chr4 132006268 132006414 -70321933 - MER5A DNA MER1_type -1 188 4 577 206 35 14 chr4 132007707 132007848 -70320499 + L1ME1 LINE L1 4965 5108 -1038 1143 231 31 31 chr4 132007857 132008178 -70320169 + L1ME1 LINE L1 5841 6161 -5 40 49 0 0 chr4 132008246 132008307 -70320040 + AT_rich Low_complexity Low_complexity 1 61 0 1945 129 7 0 chr4 132008790 132009070 -70319277 + AluSx SINE Alu 1 282 -30 294 143 0 0 chr4 132009643 132009692 -70318655 + (TG)n Simple_repeat Simple_repeat 2 50 0 267 275 20 13 chr4 132009827 132009841 -70318506 + (TA)n Simple_repeat Simple_repeat 1 13 -137 2036 139 3 0 chr4 132009841 132010129 -70318218 + AluSp SINE Alu 1 289 -24 267 275 20 13 chr4 132010129 132010263 -70318084 + (TA)n Simple_repeat Simple_repeat 13 150 0 1675 230 94 72 chr4 132010264 132010795 -70317552 + MLT1E LTR MaLR 51 593 0 613 253 22 28 chr4 132010796 132010978 -70317369 + MLT1E-int LTR MaLR 2 182 -1189 356 191 51 64 chr4 132010998 132011155 -70317192 - L1MEc LINE L1 -3234 2981 2827 971 306 108 33 chr4 132011212 132012241 -70316106 - L1MEc LINE L1 -5254 1142 37 212 258 202 11 chr4 132012278 132012367 -70315980 - MIR SINE MIR -146 116 11 253 379 34 38 chr4 132012402 132012637 -70315710 - L2 LINE L2 -431 2883 2650 315 0 0 0 chr4 132013281 132013316 -70315031 + (CA)n Simple_repeat Simple_repeat 2 36 0 1794 62 0 0 chr4 132013518 132013744 -70314603 - L1P LINE L1 -5920 226 1 * 2144 200 36 103 chr4 132013742 132015324 -70313023 - L1MCa LINE L1 -4853 1054 19 22 35 0 0 chr4 132015377 132015406 -70312941 + AT_rich Low_complexity Low_complexity 1 29 0 1840 297 24 2 chr4 132015441 132015942 -70312405 - LTR40a LTR ERVL -5 514 3 441 271 31 8 chr4 132015950 132016079 -70312268 + MIR SINE MIR 28 159 -103 1277 194 0 0 chr4 132016124 132016341 -70312006 + AluSg/x SINE Alu 85 301 -11 231 36 0 0 chr4 132016362 132016390 -70311957 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 640 261 73 33 chr4 132017972 132018217 -70310130 - LTR33 LTR ERVL -5 516 262 26 50 0 0 chr4 132018413 132018453 -70309894 + AT_rich Low_complexity Low_complexity 1 40 0 386 307 61 30 chr4 132018744 132018975 -70309372 - L1M4 LINE L1 -3188 3194 2957 3099 176 137 25 chr4 132019012 132019173 -70309174 + L1PB4 LINE L1 5105 5247 -909 1758 169 41 22 chr4 132019173 132019541 -70308806 + THE1C LTR MaLR 1 375 0 3099 176 137 25 chr4 132019541 132020330 -70308017 + L1PB4 LINE L1 5247 6156 0 251 290 37 89 chr4 132020467 132020591 -70307756 + Charlie2 DNA MER1_type 86 196 -2586 2198 124 30 30 chr4 132020591 132020955 -70307392 + THE1B LTR MaLR 1 364 0 251 290 37 89 chr4 132020955 132021044 -70307303 + Charlie2 DNA MER1_type 196 288 -2494 2167 102 0 33 chr4 132021133 132021437 -70306910 + AluSg SINE Alu 1 294 -16 190 106 43 0 chr4 132021482 132021529 -70306818 + (TA)n Simple_repeat Simple_repeat 2 50 0 258 222 44 22 chr4 132022028 132022163 -70306184 + (TA)n Simple_repeat Simple_repeat 1 138 0 322 314 24 8 chr4 132022231 132022355 -70305992 - L1M4 LINE L1 -4227 2157 2032 2302 226 61 66 chr4 132022387 132023506 -70304841 + L1M1 LINE L1 3410 4516 -3049 1489 158 0 4 chr4 132023508 132023742 -70304605 + AluSq SINE Alu 2 234 -79 1764 225 19 0 chr4 132023742 132024106 -70304241 + MLT-int LTR MaLR 262 632 -1103 539 68 53 167 chr4 132024106 132024238 -70304109 - MLT2A1 LTR ERVL 0 444 328 3740 116 30 71 chr4 132024573 132025218 -70303129 + THE1-int LTR MaLR 176 793 -787 204 125 0 0 chr4 132025475 132025507 -70302840 + (T)n Simple_repeat Simple_repeat 1 32 0 23 0 0 0 chr4 132026730 132026753 -70301594 + AT_rich Low_complexity Low_complexity 1 23 0 713 319 32 4 chr4 132027093 132027341 -70301006 + MIR SINE MIR 8 262 0 785 234 67 82 chr4 132028781 132029256 -70299091 - LTR37B LTR ERV1 0 468 1 2007 104 4 0 chr4 132029365 132029634 -70298713 - AluSg1 SINE Alu -2 307 38 930 128 17 0 chr4 132029917 132030089 -70298258 + CT-rich Low_complexity Low_complexity 4 178 0 2206 173 5 13 chr4 132031103 132031496 -70296851 - MLT1B LTR MaLR 0 390 1 1154 181 44 4 chr4 132032156 132032427 -70295920 + L1MA8 LINE L1 6010 6291 0 25 51 0 0 chr4 132032472 132032511 -70295836 + AT_rich Low_complexity Low_complexity 1 39 0 281 262 41 33 chr4 132034487 132034609 -70293738 + MER103 DNA DNA 17 139 -27 10107 22 0 0 chr4 132034687 132035867 -70292480 - L1HS LINE L1 -983 5163 3984 7957 11 0 0 chr4 132035867 132036868 -70291479 + L1HS LINE L1 5155 6155 0 216 0 0 0 chr4 132036872 132036896 -70291451 + (A)n Simple_repeat Simple_repeat 1 24 0 294 197 33 0 chr4 132036900 132036961 -70291386 - MIR3 SINE MIR -40 168 106 22 35 0 0 chr4 132037646 132037675 -70290672 + AT_rich Low_complexity Low_complexity 1 29 0 784 243 52 9 chr4 132038439 132038649 -70289698 + MER20 DNA MER1_type 1 219 0 319 200 50 0 chr4 132040363 132040423 -70287924 + MER20 DNA MER1_type 157 219 0 932 288 137 10 chr4 132040680 132040997 -70287350 + L2 LINE L2 2526 2801 -512 2720 107 0 3 chr4 132040997 132041372 -70286975 + THE1C LTR MaLR 2 375 0 932 288 137 10 chr4 132041372 132041734 -70286613 + L2 LINE L2 2801 3307 -6 240 35 0 0 chr4 132041743 132041772 -70286575 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 1844 142 4 0 chr4 132042254 132042522 -70285825 + AluY SINE Alu 2 270 -41 3080 121 8 14 chr4 132043278 132043766 -70284581 + L1PA15 LINE L1 5681 6165 0 650 319 61 9 chr4 132044089 132044318 -70284029 - MIR SINE MIR -7 255 15 495 303 81 10 chr4 132044373 132044571 -70283776 + MIR SINE MIR 37 248 -14 186 43 0 0 chr4 132044571 132044594 -70283753 + (TC)n Simple_repeat Simple_repeat 2 24 0 25 51 0 0 chr4 132044848 132044887 -70283460 + AT_rich Low_complexity Low_complexity 1 39 0 1535 147 38 0 chr4 132045666 132045931 -70282416 + L1PB3 LINE L1 5880 6154 0 183 80 0 0 chr4 132046515 132046540 -70281807 + (TTTTC)n Simple_repeat Simple_repeat 5 29 0 26 30 0 0 chr4 132046698 132046731 -70281616 + AT_rich Low_complexity Low_complexity 1 33 0 189 74 0 0 chr4 132047612 132047639 -70280708 + (CAGG)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr4 132048167 132048188 -70280159 + AT_rich Low_complexity Low_complexity 1 21 0 2893 122 7 7 chr4 132048621 132049055 -70279292 + MER57B LTR ERV1 1 434 0 24613 172 13 20 chr4 132049144 132055080 -70273267 + L1P4 LINE L1 11 7255 -351 3412 94 16 10 chr4 132055095 132055593 -70272754 + L1PA10 LINE L1 5664 6164 -4 240 367 67 0 chr4 132055832 132055952 -70272395 + L3b LINE CR1 1419 1546 -37 181 296 19 37 chr4 132056030 132056084 -70272263 + MIR SINE MIR 90 142 -66 219 69 0 0 chr4 132057637 132057666 -70270681 + (TA)n Simple_repeat Simple_repeat 2 30 0 31 44 0 0 chr4 132058081 132058126 -70270221 + AT_rich Low_complexity Low_complexity 1 45 0 197 309 96 11 chr4 132058490 132058584 -70269763 + L2 LINE L2 2989 3090 -223 671 167 37 25 chr4 132058735 132058897 -70269450 - MER96B DNA MER1_type? -78 339 176 745 325 95 0 chr4 132058899 132059247 -70269100 + HERVL LTR ERVL 2876 3256 -2398 543 322 56 6 chr4 132059330 132059704 -70268643 + LTR67 LTR ERVL 113 531 -26 2326 42 0 14 chr4 132062340 132062656 -70265691 - AluY SINE Alu 0 312 1 203 184 0 0 chr4 132063747 132063785 -70264562 + A-rich Low_complexity Low_complexity 1 38 0 2229 130 31 6 chr4 132063803 132064158 -70264189 + THE1B LTR MaLR 1 364 0 509 373 71 17 chr4 132064181 132064589 -70263758 + L2 LINE L2 2302 2731 -583 985 293 63 16 chr4 132064752 132065660 -70262687 + L1ME3A LINE L1 5149 6163 -7 27 0 0 0 chr4 132066085 132066112 -70262235 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr4 132066400 132066423 -70261924 + AT_rich Low_complexity Low_complexity 1 23 0 508 288 121 10 chr4 132067177 132067375 -70260972 - MIR SINE MIR -42 220 1 2224 175 49 0 chr4 132067981 132068387 -70259960 + MSTB LTR MaLR 1 426 0 1803 174 18 9 chr4 132069102 132069442 -70258905 + MER2 DNA MER2_type 2 344 0 1600 210 3 0 chr4 132072469 132072760 -70255587 - AluJo SINE Alu -20 292 1 723 274 137 72 chr4 132073104 132073491 -70254856 + MLT1H LTR MaLR 122 533 -16 3323 252 42 19 chr4 132073590 132074618 -70253729 + L1M4 LINE L1 658 1709 -4833 258 128 0 0 chr4 132074621 132074660 -70253687 - L1M4 LINE L1 -615 5569 5531 6159 137 30 8 chr4 132074660 132075660 -70252687 - Tigger1 DNA MER2_type 0 2418 1397 2765 171 26 30 chr4 132075675 132076206 -70252141 - Tigger1 DNA MER2_type -1886 532 4 748 180 3 65 chr4 132076208 132076262 -70252085 - L1M4 LINE L1 -651 5480 5424 662 25 0 0 chr4 132076262 132076341 -70252006 - L1PA5 LINE L1 -6 6148 6070 748 180 3 65 chr4 132076341 132076470 -70251877 - L1M4 LINE L1 -707 5424 5357 3132 272 105 39 chr4 132077153 132078625 -70249722 + L2 LINE L2 586 2155 -1159 212 352 67 29 chr4 132078691 132078796 -70249551 + L2 LINE L2 2299 2407 -907 190 314 129 29 chr4 132078821 132078891 -70249456 - L2 LINE L2 -592 2722 2646 22 35 0 0 chr4 132079052 132079081 -70249266 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr4 132079104 132079142 -70249205 + AT_rich Low_complexity Low_complexity 1 38 0 1361 211 57 4 chr4 132079149 132079414 -70248933 + AluJo SINE Alu 5 283 -19 263 85 21 0 chr4 132079414 132079461 -70248886 + (TA)n Simple_repeat Simple_repeat 2 49 0 237 132 0 0 chr4 132081506 132081544 -70246803 + (TG)n Simple_repeat Simple_repeat 1 38 0 213 39 0 0 chr4 132081620 132081646 -70246701 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 26 0 0 0 chr4 132082368 132082394 -70245953 + AT_rich Low_complexity Low_complexity 1 26 0 217 246 0 0 chr4 132082991 132083048 -70245299 + (TA)n Simple_repeat Simple_repeat 1 57 0 215 250 0 0 chr4 132084118 132084170 -70244177 + T-rich Low_complexity Low_complexity 1 52 0 715 254 43 19 chr4 132084508 132084717 -70243630 - MIR SINE MIR 0 262 49 907 258 39 4 chr4 132084854 132085083 -70243264 - MIR SINE MIR 0 262 26 203 346 86 0 chr4 132085200 132085281 -70243066 + L2 LINE L2 3183 3270 -2 206 324 67 38 chr4 132085948 132086053 -70242294 - MIR SINE MIR -64 144 37 310 311 74 17 chr4 132086168 132086341 -70242006 + MIR SINE MIR 20 204 -58 627 291 134 61 chr4 132086440 132086962 -70241385 - L2 LINE L2 0 3313 2757 2187 97 0 10 chr4 132086962 132087272 -70241075 + AluSq SINE Alu 1 307 -6 627 291 134 61 chr4 132087272 132087328 -70241019 - L2 LINE L2 -556 2757 2707 2948 164 32 4 chr4 132087329 132087858 -70240489 - L1PA12 LINE L1 -5179 2402 1859 414 235 255 7 chr4 132087865 132088014 -70240333 - L2 LINE L2 -600 2714 2529 675 269 94 58 chr4 132088030 132088282 -70240065 - L2 LINE L2 -1030 2284 2012 2169 95 0 7 chr4 132088282 132088586 -70239761 + AluSg SINE Alu 1 302 -8 675 269 94 58 chr4 132088586 132088727 -70239620 - L2 LINE L2 -1302 2012 1877 278 259 222 15 chr4 132088939 132089074 -70239273 + L2 LINE L2 2599 2761 -553 186 317 89 41 chr4 132089264 132089387 -70238960 + L2 LINE L2 3184 3312 -1 287 324 66 33 chr4 132091000 132091182 -70237165 + L3b LINE CR1 1371 1558 -25 25 51 0 0 chr4 132091894 132091933 -70236414 + AT_rich Low_complexity Low_complexity 1 39 0 295 295 87 19 chr4 132092986 132093130 -70235217 + MIR SINE MIR 45 194 -14 2072 115 0 10 chr4 132093649 132093945 -70234402 + AluSq SINE Alu 1 293 -20 197 119 24 0 chr4 132094019 132094061 -70234286 + (TA)n Simple_repeat Simple_repeat 2 44 0 420 267 91 38 chr4 132095162 132095358 -70232989 - MER5B DNA MER1_type 0 189 2 5928 107 25 3 chr4 132095409 132096299 -70232048 - L1PA13 LINE L1 -1 6162 5254 371 351 68 56 chr4 132096309 132096578 -70231769 + L2 LINE L2 2243 2522 -792 1822 201 11 62 chr4 132096578 132097012 -70231335 + MLT2D LTR ERVL 3 414 0 371 351 68 56 chr4 132097012 132097243 -70231104 + L2 LINE L2 2522 2749 -565 180 0 0 0 chr4 132097363 132097383 -70230964 + (CATA)n Simple_repeat Simple_repeat 2 21 0 562 232 217 34 chr4 132097624 132097831 -70230516 - MIR SINE MIR -17 245 1 2763 92 97 0 chr4 132097995 132098419 -70229928 + MER4C LTR ERV1 1 465 0 1811 35 17 0 chr4 132098935 132099166 -70229181 - L1PA4 LINE L1 -750 5396 5162 6287 40 0 0 chr4 132099166 132099923 -70228424 + L1PA4 LINE L1 5396 6153 -2 21 0 0 0 chr4 132099974 132099995 -70228352 + AT_rich Low_complexity Low_complexity 1 21 0 1566 224 87 24 chr4 132103198 132103657 -70224690 + MLT1D LTR MaLR 18 505 0 386 283 35 21 chr4 132103783 132103928 -70224419 + MLT1J LTR MaLR 74 220 -291 29 47 0 0 chr4 132104353 132104396 -70223951 + AT_rich Low_complexity Low_complexity 1 43 0 203 356 0 46 chr4 132106858 132106945 -70221402 - MIR3 SINE MIR -118 90 8 743 214 128 59 chr4 132107176 132107568 -70220779 - L1MC5 LINE L1 -48 7913 7495 13080 214 46 13 chr4 132107594 132111441 -70216906 + L1M1 LINE L1 2624 6601 -964 749 150 0 0 chr4 132111444 132111557 -70216790 - L1 LINE L1 -1161 4985 4873 435 291 103 11 chr4 132111799 132111974 -70216373 + MIR SINE MIR 44 234 -28 264 342 98 11 chr4 132112860 132113044 -70215303 + MIR SINE MIR 20 219 -43 29 0 0 0 chr4 132113289 132113318 -70215029 + AT_rich Low_complexity Low_complexity 1 29 0 13333 22 0 0 chr4 132113318 132114896 -70213451 - L1PA3 LINE L1 -753 5393 3816 6409 30 1 0 chr4 132114896 132115646 -70212701 + L1PA3 LINE L1 5396 6150 -5 216 0 0 0 chr4 132115650 132115674 -70212673 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 246 223 159 87 chr4 132116999 132117345 -70211002 + L1MEd LINE L1 976 1346 -5026 310 293 99 55 chr4 132117348 132117529 -70210818 + L1MEd LINE L1 1246 1434 -4950 596 301 144 32 chr4 132117915 132118285 -70210062 - HAL1 LINE L1 -1184 1323 887 180 0 0 0 chr4 132118285 132118305 -70210042 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 596 301 144 32 chr4 132118305 132118405 -70209942 - HAL1 LINE L1 -1620 887 800 693 303 139 28 chr4 132119020 132119489 -70208858 + LTR33 LTR ERVL 1 521 0 21 57 0 0 chr4 132120719 132120754 -70207593 + AT_rich Low_complexity Low_complexity 1 35 0 2826 7 0 0 chr4 132120801 132121110 -70207237 + AluYa5 SINE Alu 1 309 -2 2411 63 0 0 chr4 132121522 132121821 -70206526 - AluY SINE Alu -12 299 1 15587 83 1 1 chr4 132121938 132124068 -70204279 + L1P LINE L1 2919 5047 -1099 1594 174 38 55 chr4 132124347 132124714 -70203633 + MLT1A1 LTR MaLR 3 363 -2 7456 224 63 30 chr4 132124714 132126388 -70201959 + MLT1A1-int LTR MaLR 3 1731 -4 1369 163 58 100 chr4 132126392 132126773 -70201574 + MLT1A1 LTR MaLR 1 365 0 331 352 117 45 chr4 132127153 132127596 -70200751 - L2 LINE L2 -400 2914 2440 2176 80 7 10 chr4 132127788 132128088 -70200259 - AluY SINE Alu -10 301 3 293 324 0 29 chr4 132129218 132129320 -70199027 - L2 LINE L2 0 3313 3215 1860 119 0 0 chr4 132129364 132129624 -70198723 + AluSc SINE Alu 37 296 -13 652 303 76 12 chr4 132129804 132130055 -70198292 - MLT2F LTR ERVL -396 267 1 201 226 0 0 chr4 132130342 132130395 -70197952 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 2722 94 0 15 chr4 132130406 132130811 -70197536 - L1PA13 LINE L1 -6 6157 5759 763 221 0 0 chr4 132130812 132130952 -70197395 - AluJb SINE Alu -25 287 148 186 43 0 0 chr4 132131316 132131339 -70197008 + (CA)n Simple_repeat Simple_repeat 1 23 0 328 172 17 0 chr4 132131679 132131737 -70196610 + MLT1C LTR MaLR 361 419 -48 1181 154 81 0 chr4 132132215 132132436 -70195911 + L1MC1 LINE L1 6095 6333 0 22 35 0 0 chr4 132132667 132132696 -70195651 + AT_rich Low_complexity Low_complexity 1 29 0 278 333 0 11 chr4 132133016 132133103 -70195244 - L2 LINE L2 -50 3222 3137 247 286 154 33 chr4 132133111 132133293 -70195054 + MIR SINE MIR 57 260 -2 218 184 0 0 chr4 132133409 132133447 -70194900 + (TG)n Simple_repeat Simple_repeat 1 38 0 742 317 29 12 chr4 132133521 132133767 -70194580 + MIR SINE MIR 13 262 0 44 80 0 0 chr4 132135253 132135353 -70192994 + AT_rich Low_complexity Low_complexity 1 100 0 28 29 0 0 chr4 132135882 132135917 -70192430 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr4 132137451 132137482 -70190865 + AT_rich Low_complexity Low_complexity 1 31 0 1287 186 48 17 chr4 132137557 132137848 -70190499 - MLT1A1 LTR MaLR 0 365 66 484 332 53 23 chr4 132137863 132138258 -70190089 + L1ME2 LINE L1 105 511 -5885 3058 250 65 72 chr4 132138493 132140114 -70188233 + L1ME2 LINE L1 1732 3364 -2851 460 145 13 0 chr4 132140114 132140190 -70188157 + FRAM/FAM SINE Alu 1 77 -99 3058 250 65 72 chr4 132140190 132140251 -70188096 + L1ME2 LINE L1 3364 3424 -2791 1458 238 34 29 chr4 132140251 132140667 -70187680 - LTR52 LTR ERVL -3 418 1 3058 250 65 72 chr4 132140667 132141676 -70186671 + L1ME2 LINE L1 3424 4439 -1776 315 49 0 0 chr4 132141676 132141717 -70186630 + (CA)n Simple_repeat Simple_repeat 2 42 0 3058 250 65 72 chr4 132141717 132141954 -70186393 + L1ME2 LINE L1 4439 4676 -1539 1160 174 14 14 chr4 132141954 132142173 -70186174 - MER20 DNA MER1_type 0 219 1 3058 250 65 72 chr4 132142173 132142688 -70185659 + L1ME2 LINE L1 4676 5341 -874 2124 222 157 39 chr4 132142719 132143524 -70184823 + L1ME2 LINE L1 5325 6224 -9 250 81 0 0 chr4 132143495 132143532 -70184815 + L1MB7 LINE L1 6206 6242 -11 * 35 0 0 0 chr4 132143532 132143567 -70184780 + AT_rich Low_complexity Low_complexity 1 35 0 260 163 25 50 chr4 132143875 132143955 -70184392 + T-rich Low_complexity Low_complexity 3 80 0 323 361 0 23 chr4 132144403 132144536 -70183811 - MIR3 SINE MIR -30 178 49 726 173 22 21 chr4 132144662 132144942 -70183405 + CT-rich Low_complexity Low_complexity 1 280 0 239 339 123 29 chr4 132144992 132145163 -70183184 + MIR SINE MIR 1 187 -75 26 50 0 0 chr4 132145179 132145219 -70183128 + AT_rich Low_complexity Low_complexity 1 40 0 21 57 0 0 chr4 132145463 132145498 -70182849 + AT_rich Low_complexity Low_complexity 1 35 0 4490 173 50 91 chr4 132145850 132145967 -70182380 - L1MC3 LINE L1 -743 5403 5283 1704 188 36 14 chr4 132145967 132146324 -70182023 + MLT1A1 LTR MaLR 1 365 0 4490 173 50 91 chr4 132146324 132147810 -70180537 - L1MC3 LINE L1 -863 5283 4964 691 259 113 5 chr4 132147830 132148042 -70180305 + L1ME LINE L1 5528 5762 -408 1389 203 91 18 chr4 132148046 132148431 -70179916 + L1M4 LINE L1 4459 4871 -1275 641 77 0 0 chr4 132148433 132148524 -70179823 - AluS SINE Alu -222 91 1 235 352 75 19 chr4 132148543 132148864 -70179483 - HAL1 LINE L1 -899 1608 1270 382 300 95 48 chr4 132148874 132149147 -70179200 - L1MEd LINE L1 -4968 1151 866 1817 139 29 0 chr4 132149227 132149501 -70178846 + AluJb SINE Alu 17 298 -14 225 179 18 54 chr4 132150493 132150549 -70177798 - MLT1J LTR MaLR -170 341 288 1411 179 151 23 chr4 132150687 132151038 -70177309 + MSTD LTR MaLR 1 396 0 359 297 9 9 chr4 132151039 132151150 -70177197 + MER110 LTR ERV1 58 168 -323 34855 75 5 8 chr4 132151151 132156760 -70171587 - L1PA6 LINE L1 0 6154 565 2176 101 0 0 chr4 132156763 132157041 -70171306 - AluY SINE Alu -33 278 1 860 313 49 0 chr4 132157041 132157345 -70171002 + MER110 LTR ERV1 164 482 -9 219 216 59 0 chr4 132157995 132158046 -70170301 + (CATG)n Simple_repeat Simple_repeat 1 54 0 309 192 26 51 chr4 132158986 132159064 -70169283 - MLT1J LTR MaLR -58 453 378 1955 146 0 16 chr4 132159174 132159482 -70168865 - AluJb SINE Alu -7 305 3 1034 185 0 0 chr4 132159547 132159720 -70168627 + MER54A LTR ERVL 1 173 -728 2985 173 45 28 chr4 132159720 132160019 -70168328 - LTR39 LTR ERV1 0 783 491 2221 98 0 0 chr4 132160019 132160316 -70168031 + AluSg SINE Alu 5 301 -9 2985 173 45 28 chr4 132160316 132160593 -70167754 - LTR39 LTR ERV1 -292 491 197 888 320 122 21 chr4 132162074 132162631 -70165716 + L2 LINE L2 2255 2867 -447 1405 35 0 0 chr4 132163532 132163702 -70164645 + L1HS LINE L1 5811 5980 -175 429 18 0 0 chr4 132163702 132163756 -70164591 + L1PA2 LINE L1 6096 6152 -3 511 271 84 12 chr4 132163790 132163956 -70164391 + MER5B DNA MER1_type 1 178 0 22 0 0 0 chr4 132165940 132165962 -70162385 + AT_rich Low_complexity Low_complexity 1 22 0 2216 65 0 4 chr4 132166266 132166570 -70161777 - AluY SINE Alu 0 309 7 26 30 0 0 chr4 132166753 132166786 -70161561 + AT_rich Low_complexity Low_complexity 1 33 0 228 213 47 27 chr4 132166792 132166942 -70161405 + (TA)n Simple_repeat Simple_repeat 2 154 0 10436 28 0 0 chr4 132167566 132169258 -70159089 - L1PA3 LINE L1 -317 5838 4147 2362 28 3 0 chr4 132169258 132169539 -70158808 + L1PA3 LINE L1 5872 6155 0 258 318 27 0 chr4 132169603 132169713 -70158634 - MER94 DNA DNA -6 128 16 5323 152 20 12 chr4 132170269 132171183 -70157164 + MER49 LTR ERV1 3 923 0 734 302 127 24 chr4 132171737 132172200 -70156147 + LTR33 LTR ERVL 11 521 0 281 237 0 54 chr4 132172626 132172719 -70155628 - MLT1L LTR MaLR -103 512 425 2465 48 0 6 chr4 132172922 132173234 -70155113 + AluY SINE Alu 1 310 -1 2454 136 49 0 chr4 132173553 132173959 -70154388 + MSTB LTR MaLR 1 426 0 3274 229 61 113 chr4 132175742 132177181 -70151166 + MLT1A1-int LTR MaLR 1 1365 -6 1482 184 42 36 chr4 132177190 132177549 -70150798 + MLT1A1 LTR MaLR 5 365 0 1062 227 70 44 chr4 132177600 132177988 -70150359 - L1M LINE L1 -821 5325 4946 * 1311 227 26 21 chr4 132177974 132178358 -70149989 - L1M4 LINE L1 -1307 4839 4454 399 282 41 58 chr4 132178675 132179037 -70149310 + L1MEd LINE L1 900 1255 -4864 240 246 53 44 chr4 132179425 132179501 -70148846 + L1MEd LINE L1 2236 2315 -3814 7429 30 7 1 chr4 132179501 132180424 -70147923 + L1PA4 LINE L1 5228 6155 0 240 246 53 44 chr4 132180424 132180461 -70147886 + L1MEd LINE L1 2315 2350 -3779 1467 221 0 3 chr4 132180535 132180829 -70147518 - AluJb SINE Alu -8 304 12 22 56 0 0 chr4 132181146 132181182 -70147165 + AT_rich Low_complexity Low_complexity 1 36 0 2214 119 0 0 chr4 132181970 132182272 -70146075 + AluSg SINE Alu 1 302 -8 317 336 154 37 chr4 132182441 132182765 -70145582 + L2 LINE L2 2911 3272 0 249 277 40 40 chr4 132182780 132182881 -70145466 + MIR3 SINE MIR 98 198 -10 2127 99 7 14 chr4 132184637 132184931 -70143416 + AluSp SINE Alu 4 295 -18 251 382 51 19 chr4 132185513 132185670 -70142677 - MIR3 SINE MIR -15 193 32 180 146 73 0 chr4 132185794 132185835 -70142512 - L2 LINE L2 -2 3311 3268 2172 94 0 3 chr4 132186323 132186611 -70141736 - AluSx SINE Alu -13 299 13 242 315 64 30 chr4 132187125 132187328 -70141019 + L2 LINE L2 2947 3156 -157 252 236 0 0 chr4 132187328 132187383 -70140964 + (TGAA)n Simple_repeat Simple_repeat 2 56 0 774 176 12 18 chr4 132187503 132187668 -70140679 - L1MA5 LINE L1 0 6300 6137 521 185 281 14 chr4 132188902 132189048 -70139299 - MER5A DNA MER1_type -1 188 4 577 206 35 14 chr4 132190341 132190482 -70137865 + L1ME1 LINE L1 4965 5108 -1038 1143 231 31 31 chr4 132190491 132190812 -70137535 + L1ME1 LINE L1 5841 6161 -5 40 49 0 0 chr4 132190880 132190941 -70137406 + AT_rich Low_complexity Low_complexity 1 61 0 1945 129 7 0 chr4 132191424 132191704 -70136643 + AluSx SINE Alu 1 282 -30 294 143 0 0 chr4 132192277 132192326 -70136021 + (TG)n Simple_repeat Simple_repeat 2 50 0 267 275 20 13 chr4 132192461 132192475 -70135872 + (TA)n Simple_repeat Simple_repeat 1 13 -137 2036 139 3 0 chr4 132192475 132192763 -70135584 + AluSp SINE Alu 1 289 -24 267 275 20 13 chr4 132192763 132192897 -70135450 + (TA)n Simple_repeat Simple_repeat 13 150 0 1675 230 94 72 chr4 132192898 132193429 -70134918 + MLT1E LTR MaLR 51 593 0 613 253 22 28 chr4 132193430 132193612 -70134735 + MLT1E-int LTR MaLR 2 182 -1189 356 191 51 64 chr4 132193632 132193789 -70134558 - L1MEc LINE L1 -3234 2981 2827 957 307 108 33 chr4 132193846 132194875 -70133472 - L1MEc LINE L1 -5254 1142 37 212 258 202 11 chr4 132194912 132195001 -70133346 - MIR SINE MIR -146 116 11 253 379 34 38 chr4 132195036 132195271 -70133076 - L2 LINE L2 -431 2883 2650 333 0 0 0 chr4 132195915 132195952 -70132395 + (CA)n Simple_repeat Simple_repeat 2 38 0 6940 224 15 40 chr4 132196661 132198558 -70129789 + L1MA9 LINE L1 3464 5302 -2263 1926 150 7 0 chr4 132198558 132198852 -70129495 + AluSx SINE Alu 4 299 -13 6940 224 15 40 chr4 132198852 132199063 -70129284 + L1MA9 LINE L1 5302 5517 -2048 637 230 14 14 chr4 132199063 132199202 -70129145 - BC200 scRNA scRNA -61 139 1 5966 173 41 23 chr4 132199204 132199447 -70128900 + L1MA9 LINE L1 5505 5742 -1989 1932 151 18 0 chr4 132199447 132199731 -70128616 + AluSx SINE Alu 1 289 -23 5966 173 41 23 chr4 132199731 132201578 -70126769 + L1MA9 LINE L1 5742 7626 -105 2557 228 13 25 chr4 132201576 132202363 -70125984 - L1 LINE L1 -1269 4877 4132 * 641 251 155 0 chr4 132202402 132202589 -70125758 + MER58A DNA MER1_type 6 221 -3 21 0 0 0 chr4 132203523 132203544 -70124803 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 132203967 132203988 -70124359 + AT_rich Low_complexity Low_complexity 1 21 0 1268 185 35 123 chr4 132207804 132208204 -70120143 + MLT1A1 LTR MaLR 1 365 0 1445 99 7 99 chr4 132208268 132208420 -70119927 + L1PA8 LINE L1 5917 6081 -91 1842 134 3 56 chr4 132208420 132208725 -70119622 + AluSq SINE Alu 1 289 -24 188 83 0 28 chr4 132208731 132208767 -70119580 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1445 99 7 99 chr4 132208767 132208880 -70119467 + L1PA8 LINE L1 6086 6164 -8 21 57 0 0 chr4 132208880 132208915 -70119432 + AT_rich Low_complexity Low_complexity 1 35 0 233 191 43 0 chr4 132209307 132209354 -70118993 + GA-rich Low_complexity Low_complexity 5 53 0 265 250 186 32 chr4 132211822 132211978 -70116369 - MIR SINE MIR -25 237 58 881 115 27 34 chr4 132211981 132212129 -70116218 - LTR54B LTR ERV1 -344 154 8 782 226 16 11 chr4 132212622 132212808 -70115539 + MER5A DNA MER1_type 3 189 0 220 236 0 18 chr4 132213414 132213469 -70114878 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 396 351 5 40 chr4 132213476 132213678 -70114669 - MIR SINE MIR -66 196 2 192 262 0 0 chr4 132214267 132214309 -70114038 - MIR SINE MIR -111 97 56 2250 77 0 20 chr4 132214677 132214977 -70113370 + AluSc SINE Alu 1 294 -15 30 27 0 0 chr4 132215907 132215944 -70112403 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 132216620 132216642 -70111705 + AT_rich Low_complexity Low_complexity 1 22 0 1275 243 31 76 chr4 132216784 132217295 -70111052 - L1ME1 LINE L1 -130 6036 5549 189 340 170 7 chr4 132217985 132218126 -70110221 + MIR SINE MIR 73 236 -26 21 0 0 0 chr4 132218898 132218919 -70109428 + AT_rich Low_complexity Low_complexity 1 21 0 498 233 178 6 chr4 132219040 132219203 -70109144 + MIR SINE MIR 9 199 -63 207 0 0 0 chr4 132219994 132220017 -70108330 + (TG)n Simple_repeat Simple_repeat 2 24 0 1014 86 13 7 chr4 132220455 132220606 -70107741 - AluY SINE Alu -5 306 155 3986 112 207 124 chr4 132220649 132221936 -70106411 + pTR5 LTR ERV1 741 2438 0 2293 81 0 10 chr4 132222332 132222629 -70105718 - AluY SINE Alu -17 294 1 240 333 106 22 chr4 132223699 132223879 -70104468 + L2 LINE L2 2835 3029 -243 24 0 0 0 chr4 132223985 132224009 -70104338 + AT_rich Low_complexity Low_complexity 1 24 0 233 290 90 10 chr4 132224162 132224262 -70104085 + L2 LINE L2 3203 3310 -3 28 29 0 0 chr4 132224337 132224372 -70103975 + AT_rich Low_complexity Low_complexity 1 35 0 271 279 135 10 chr4 132224863 132224967 -70103380 - MIR SINE MIR -143 119 3 24 53 0 0 chr4 132226855 132226893 -70101454 + AT_rich Low_complexity Low_complexity 1 38 0 671 276 5 46 chr4 132226989 132227185 -70101162 + MER63A DNA MER1_type 23 210 0 1380 236 66 13 chr4 132228552 132229009 -70099338 + L1ME2 LINE L1 4746 5226 -920 2370 256 36 54 chr4 132229030 132229933 -70098414 + L1ME2 LINE L1 5270 6156 -8 271 401 67 25 chr4 132229954 132230281 -70098066 + L2 LINE L2 2235 2575 -739 349 321 34 34 chr4 132230419 132230698 -70097649 + Charlie8 DNA MER1_type 1 273 -2144 189 0 0 0 chr4 132231016 132231037 -70097310 + (TA)n Simple_repeat Simple_repeat 2 22 0 26 0 0 0 chr4 132231378 132231404 -70096943 + AT_rich Low_complexity Low_complexity 1 26 0 209 125 28 42 chr4 132232280 132232352 -70095995 + CT-rich Low_complexity Low_complexity 4 74 0 941 301 128 13 chr4 132232352 132232814 -70095533 + LTR67 LTR ERVL 35 549 -8 1561 203 7 16 chr4 132232964 132233269 -70095078 - AluJo SINE Alu -8 304 3 225 283 0 0 chr4 132233790 132233843 -70094504 + (TATATG)n Simple_repeat Simple_repeat 1 53 0 1092 236 48 20 chr4 132233898 132234254 -70094093 + Charlie5 DNA MER1_type 1 366 -2246 396 254 45 9 chr4 132234555 132234665 -70093682 - LTR67 LTR ERVL -8 549 436 * 1074 281 75 27 chr4 132234656 132235029 -70093318 - LTR40a LTR ERVL -104 415 25 3877 197 47 16 chr4 132235057 132236050 -70092297 + Charlie5 DNA MER1_type 367 1390 -1222 1004 240 0 0 chr4 132236050 132236250 -70092097 + AluJo SINE Alu 3 202 -110 262 130 0 0 chr4 132236256 132236302 -70092045 - L1M4 LINE L1 -1427 4719 4674 1422 204 15 52 chr4 132236305 132236633 -70091714 - MLT2B3 LTR ERVL -4 550 235 710 175 21 21 chr4 132236633 132236776 -70091571 - L1MCa LINE L1 -6278 148 6 326 200 0 0 chr4 132236778 132236843 -70091504 + Charlie5 DNA MER1_type 2077 2141 -471 493 233 60 0 chr4 132236846 132236962 -70091385 - MLT1D LTR MaLR -3 502 380 14068 179 27 15 chr4 132236962 132240069 -70088278 + L1MA3 LINE L1 3452 6598 -967 3276 122 90 2 chr4 132240070 132240645 -70087702 + L1MA3 LINE L1 7099 7724 0 531 181 167 10 chr4 132240655 132240859 -70087488 + Charlie5 DNA MER1_type 2345 2580 -32 189 359 92 14 chr4 132241716 132241858 -70086489 - L2 LINE L2 -559 2755 2603 38039 84 8 7 chr4 132243034 132249174 -70079173 + L1PA6 LINE L1 11 6153 -1 25 0 0 0 chr4 132249222 132249247 -70079100 + AT_rich Low_complexity Low_complexity 1 25 0 1525 160 97 0 chr4 132249324 132249593 -70078754 - AluJb SINE Alu -17 295 1 206 70 93 0 chr4 132249706 132249749 -70078598 + T-rich Low_complexity Low_complexity 5 51 0 14736 245 36 26 chr4 132249754 132256752 -70071595 - L1PA15 LINE L1 0 7603 1 26 50 0 0 chr4 132257136 132257176 -70071171 + AT_rich Low_complexity Low_complexity 1 40 0 30 0 0 0 chr4 132257517 132257547 -70070800 + AT_rich Low_complexity Low_complexity 1 30 0 921 233 102 26 chr4 132257701 132258191 -70070156 + L1ME3A LINE L1 2183 2709 -3437 1836 154 50 34 chr4 132258191 132258549 -70069798 - THE1B LTR MaLR 0 364 1 900 305 75 17 chr4 132258574 132259279 -70069068 + L1ME3A LINE L1 3070 3815 -2331 1545 240 88 10 chr4 132259280 132259668 -70068679 + LTR52 LTR ERVL 1 418 -3 2072 248 83 68 chr4 132259680 132260910 -70067437 + L1ME3A LINE L1 3821 5110 -1060 2027 126 0 3 chr4 132260910 132261243 -70067104 + AluSq SINE Alu 1 332 0 2072 248 83 68 chr4 132261243 132262321 -70066026 + L1ME3A LINE L1 5110 6170 0 676 330 86 46 chr4 132262362 132262968 -70065379 + L1ME3A LINE L1 4372 5001 -1145 12787 134 41 36 chr4 132262972 132263893 -70064454 - Tigger1 DNA MER2_type -3 2415 1500 2115 122 0 0 chr4 132263893 132264196 -70064151 - AluSc SINE Alu -6 303 1 12787 134 41 36 chr4 132264196 132265676 -70062671 - Tigger1 DNA MER2_type -918 1500 2 375 226 90 25 chr4 132265877 132266124 -70062223 + L1P5 LINE L1 5185 5452 -704 513 289 75 53 chr4 132266217 132266675 -70061672 + L1ME3A LINE L1 5470 5950 -214 225 340 138 0 chr4 132266822 132266981 -70061366 + HAL1 LINE L1 1626 1806 -701 235 234 16 16 chr4 132267126 132267190 -70061157 + GA-rich Low_complexity Low_complexity 2 65 0 561 259 153 25 chr4 132267190 132267557 -70060790 + HAL1 LINE L1 2012 2425 -82 328 327 112 67 chr4 132269444 132269724 -70058623 + L2 LINE L2 2312 2578 -736 1520 122 74 64 chr4 132269724 132270020 -70058327 - AluSx SINE Alu -13 299 1 328 327 112 67 chr4 132270020 132270104 -70058243 + L2 LINE L2 2578 2657 -657 1945 104 0 73 chr4 132270104 132270421 -70057926 - AluSg SINE Alu -16 294 1 328 327 112 67 chr4 132270421 132270581 -70057766 + L2 LINE L2 2657 2861 -453 256 323 10 30 chr4 132270895 132270994 -70057353 + L2 LINE L2 3217 3313 0 425 60 15 0 chr4 132271058 132271125 -70057222 + L1PB1 LINE L1 6068 6135 -16 396 0 0 0 chr4 132271279 132271323 -70057024 + (TA)n Simple_repeat Simple_repeat 1 44 0 241 242 66 33 chr4 132272056 132272147 -70056200 + MIR SINE MIR 106 199 -63 26191 29 0 0 chr4 132273248 132277174 -70051173 - L1PA3 LINE L1 0 6155 2229 418 341 42 52 chr4 132277668 132277976 -70050371 + LTR16A LTR ERVL 21 325 -125 439 233 67 7 chr4 132278056 132278206 -70050141 + L1MD2 LINE L1 4899 5057 -1089 3942 211 37 30 chr4 132278211 132279182 -70049165 + L1MD2 LINE L1 5380 6357 -2 371 283 36 12 chr4 132279301 132279467 -70048880 - L1ME3A LINE L1 -312 5858 5689 393 276 103 57 chr4 132279483 132279680 -70048667 - L1ME3A LINE L1 -2983 3163 2977 2125 129 7 3 chr4 132279680 132279989 -70048358 - AluSx SINE Alu -2 310 1 393 276 103 57 chr4 132279989 132280615 -70047732 - L1ME3A LINE L1 -3169 2977 2302 2312 197 34 0 chr4 132282256 132282724 -70045623 - L1MB8 LINE L1 -272 5906 5423 1046 201 21 93 chr4 132282736 132282860 -70045487 - L1MB8 LINE L1 -2265 3881 3750 1103 182 10 10 chr4 132282860 132283069 -70045278 - L1PB4 LINE L1 -7 6149 5941 1046 201 21 93 chr4 132283069 132283277 -70045070 - L1MB8 LINE L1 -2396 3750 3573 1262 176 16 8 chr4 132283809 132284059 -70044288 + L1MC2 LINE L1 6085 6336 -8 2016 235 70 6 chr4 132284825 132285369 -70042978 - L1MD3 LINE L1 -9 7986 7408 238 204 93 0 chr4 132285372 132285426 -70042921 - MLT1F1 LTR MaLR -437 130 72 22 56 0 0 chr4 132285849 132285885 -70042462 + AT_rich Low_complexity Low_complexity 1 36 0 665 245 106 22 chr4 132286515 132286935 -70041412 + MLT1D LTR MaLR 1 372 -18 1628 199 29 86 chr4 132286992 132287071 -70041276 + MLT1D LTR MaLR 3 85 -420 2356 117 18 44 chr4 132287071 132287456 -70040891 - THE1C LTR MaLR 0 375 1 1628 199 29 86 chr4 132287456 132287853 -70040494 + MLT1D LTR MaLR 85 452 -53 10302 22 0 0 chr4 132287853 132289059 -70039288 - L1PA2 LINE L1 -999 5147 3942 7754 18 1 0 chr4 132289059 132290046 -70038301 + L1PA2 LINE L1 5168 6155 0 244 236 28 0 chr4 132290051 132290123 -70038224 + MLT1B LTR MaLR 317 390 0 23 54 0 0 chr4 132291309 132291346 -70037001 + AT_rich Low_complexity Low_complexity 1 37 0 357 24 0 0 chr4 132291656 132291698 -70036649 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 197 398 9 18 chr4 132293856 132293969 -70034378 - L2 LINE L2 -527 2787 2676 231 354 95 6 chr4 132294412 132294570 -70033777 - L2 LINE L2 0 3313 3142 1683 182 43 73 chr4 132295376 132295720 -70032627 + MLT1A1 LTR MaLR 1 388 -8 203 429 11 6 chr4 132295860 132296042 -70032305 - L2 LINE L2 -1978 1336 1154 855 240 5 26 chr4 132297608 132297800 -70030547 + MER5A DNA MER1_type 2 189 0 223 292 135 21 chr4 132298374 132298470 -70029877 + MIR3 SINE MIR 9 115 -93 335 258 77 19 chr4 132298586 132298741 -70029606 + MER103 DNA DNA 1 164 -2 270 0 0 0 chr4 132298754 132298784 -70029563 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 237 65 0 0 chr4 132298827 132298858 -70029489 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 251 83 0 0 chr4 132299971 132300007 -70028340 + MER39B LTR ERV1 1 36 -617 224 325 218 10 chr4 132300326 132300523 -70027824 - MIR SINE MIR -22 240 3 469 294 60 64 chr4 132300523 132300877 -70027470 + L1ME LINE L1 5016 5365 -781 841 101 14 95 chr4 132300905 132301053 -70027294 - BC200 scRNA scRNA -63 137 2 295 282 47 27 chr4 132301079 132301228 -70027119 + L1ME LINE L1 5524 5675 -446 3417 170 21 13 chr4 132301786 132302414 -70025933 + MER39 LTR ERV1 76 690 -17 356 255 10 10 chr4 132304433 132304531 -70023816 - MIR SINE MIR 0 262 165 225 320 40 20 chr4 132305240 132305340 -70023007 - L2 LINE L2 -220 3093 2992 528 265 11 66 chr4 132305603 132305784 -70022563 + MIR SINE MIR 15 185 -77 210 118 0 0 chr4 132305808 132305842 -70022505 + (TA)n Simple_repeat Simple_repeat 2 35 0 244 234 0 16 chr4 132305915 132305979 -70022368 + (TGAA)n Simple_repeat Simple_repeat 3 65 0 24 0 0 0 chr4 132306049 132306073 -70022274 + AT_rich Low_complexity Low_complexity 1 24 0 508 283 118 5 chr4 132307203 132307415 -70020932 - MIR SINE MIR -25 237 2 258 366 132 42 chr4 132307512 132307922 -70020425 + L2 LINE L2 2341 2787 -527 473 182 47 115 chr4 132308201 132308349 -70019998 - MLT1J1 LTR MaLR -293 153 16 353 345 93 32 chr4 132308428 132308741 -70019606 + L2 LINE L2 2949 3280 -33 275 256 17 60 chr4 132310103 132310220 -70018127 + MLT1L LTR MaLR 495 606 -9 385 178 31 132 chr4 132310707 132310836 -70017511 - MER69A DNA AcHobo -61 116 1 384 22 0 0 chr4 132311426 132311471 -70016876 + (CA)n Simple_repeat Simple_repeat 2 46 0 253 284 69 59 chr4 132311885 132311987 -70016360 + L2 LINE L2 3169 3271 -1 25 0 0 0 chr4 132312005 132312030 -70016317 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr4 132312133 132312169 -70016178 + AT_rich Low_complexity Low_complexity 1 36 0 422 259 61 20 chr4 132312621 132312768 -70015579 + MIR SINE MIR 49 201 -61 1793 149 29 0 chr4 132312907 132313218 -70015129 + AluSx SINE Alu 1 319 0 603 239 33 22 chr4 132314105 132314285 -70014062 - MER105 DNA DNA -22 182 1 295 289 21 41 chr4 132314303 132314400 -70013947 + MER5A DNA MER1_type 12 106 -83 218 258 83 108 chr4 132314462 132314582 -70013765 + L2 LINE L2 3151 3267 -5 498 124 0 0 chr4 132314987 132315076 -70013271 + (CA)n Simple_repeat Simple_repeat 1 89 0 1713 200 62 21 chr4 132315289 132315724 -70012623 + MLT1C LTR MaLR 7 459 -8 309 303 200 11 chr4 132316073 132316258 -70012089 + L3 LINE CR1 1178 1397 -180 277 314 164 0 chr4 132316425 132316584 -70011763 + MIR SINE MIR 30 214 -48 288 0 0 0 chr4 132317420 132317452 -70010895 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1701 304 53 18 chr4 132319519 132320448 -70007899 - L2 LINE L2 -3 3310 2343 333 0 0 0 chr4 132320580 132320617 -70007730 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 216 222 128 94 chr4 132320817 132320934 -70007413 + MIR SINE MIR 85 205 -57 12795 187 41 35 chr4 132321089 132322928 -70005419 - L1MA4A LINE L1 -5 7000 5173 288 0 0 0 chr4 132322928 132322960 -70005387 + (TC)n Simple_repeat Simple_repeat 2 33 0 * 333 0 0 0 chr4 132322959 132322996 -70005351 + (TG)n Simple_repeat Simple_repeat 2 38 0 12795 187 41 35 chr4 132322960 132327514 -70000833 - L1MA4A LINE L1 -1832 5173 647 2682 99 3 0 chr4 132327514 132327877 -70000470 - THE1B LTR MaLR 0 364 1 10854 108 10 28 chr4 132327881 132329485 -69998862 - THE1B-int LTR MaLR -4 1576 2 2390 134 0 27 chr4 132329486 132329860 -69998487 - THE1B LTR MaLR 0 364 1 12795 187 41 35 chr4 132329860 132330455 -69997892 - L1MA4A LINE L1 -6359 646 1 333 0 0 0 chr4 132330947 132330984 -69997363 + (TG)n Simple_repeat Simple_repeat 1 37 0 287 127 0 18 chr4 132331469 132331524 -69996823 + (TC)n Simple_repeat Simple_repeat 2 55 0 185 0 40 0 chr4 132332048 132332073 -69996274 + (TA)n Simple_repeat Simple_repeat 1 26 0 306 385 19 13 chr4 132332361 132332517 -69995830 - MIR3 SINE MIR -1 207 51 240 367 67 25 chr4 132333330 132333450 -69994897 + MIR3 SINE MIR 6 130 -78 333 140 0 0 chr4 132333559 132333616 -69994731 + (TA)n Simple_repeat Simple_repeat 2 58 0 26 0 0 0 chr4 132334269 132334295 -69994052 + AT_rich Low_complexity Low_complexity 1 26 0 2014 140 112 23 chr4 132334309 132334473 -69993874 + MSTA LTR MaLR 1 149 -279 2208 123 3 0 chr4 132334473 132334774 -69993573 + AluSx SINE Alu 1 302 -10 2014 140 112 23 chr4 132334774 132335002 -69993345 + MSTA LTR MaLR 149 428 0 258 309 88 0 chr4 132335021 132335148 -69993199 - MIR SINE MIR -50 212 76 293 345 55 27 chr4 132335169 132335237 -69993110 + Charlie2 DNA MER1_type 1 66 -2716 2167 133 82 25 chr4 132335237 132335642 -69992705 - MSTA LTR MaLR 0 428 1 293 345 55 27 chr4 132335642 132335793 -69992554 + Charlie2 DNA MER1_type 66 226 -2556 380 261 159 24 chr4 132336191 132336398 -69991949 + MIR SINE MIR 28 262 0 196 196 176 0 chr4 132336706 132336757 -69991590 + MIR3 SINE MIR 108 167 -41 272 353 35 0 chr4 132336796 132336912 -69991435 + MIR SINE MIR 66 185 -77 1253 230 83 18 chr4 132336971 132337310 -69991037 - MLT1C LTR MaLR -1 466 106 2895 141 81 2 chr4 132337311 132337792 -69990555 - Tigger3b DNA MER2_type -711 520 2 244 328 20 25 chr4 132338212 132338316 -69990031 - MIR SINE MIR -54 154 51 23 110 0 0 chr4 132339945 132340045 -69988302 + AT_rich Low_complexity Low_complexity 1 100 0 207 175 0 0 chr4 132340514 132340554 -69987793 + (CA)n Simple_repeat Simple_repeat 1 40 0 342 327 45 0 chr4 132340708 132340818 -69987529 + L2 LINE L2 3199 3313 0 227 191 21 0 chr4 132342181 132342228 -69986119 + GA-rich Low_complexity Low_complexity 2 49 0 219 69 0 0 chr4 132342432 132342461 -69985886 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 4675 73 16 5 chr4 132343065 132344074 -69984273 + MER11A LTR ERVK 1 1259 -7 299 109 146 2 chr4 132344090 132344144 -69984203 - AluSp SINE Alu -119 184 130 250 56 0 0 chr4 132345268 132345304 -69983043 - MER11A LTR ERVK -1230 36 1 1667 25 5 0 chr4 132345680 132345879 -69982468 + L1PA4 LINE L1 5950 6149 -6 1138 245 110 6 chr4 132346103 132346438 -69981909 + MER69 DNA AcHobo 45 414 -812 867 222 76 19 chr4 132346472 132346978 -69981369 + MER69 DNA AcHobo 1957 2526 0 208 143 0 0 chr4 132348573 132348608 -69979739 + (T)n Simple_repeat Simple_repeat 1 35 0 2129 127 3 0 chr4 132350052 132350359 -69977988 - AluSq SINE Alu -5 308 1 1114 87 6 22 chr4 132351742 132351809 -69976538 + (TTCC)n Simple_repeat Simple_repeat 1 245 0 1114 87 6 22 chr4 132351809 132351992 -69976355 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 27 0 0 0 chr4 132352155 132352182 -69976165 + AT_rich Low_complexity Low_complexity 1 27 0 3142 87 23 9 chr4 132352488 132352926 -69975421 + MLT2A1 LTR ERVL 1 444 0 12151 76 2 8 chr4 132352926 132354510 -69973837 + HERVL-A1 LTR ERVL 1 1575 -4079 * 23720 76 4 3 chr4 132354507 132357515 -69970832 + HERVL-A1 LTR ERVL 1788 4797 -857 3908 95 15 4 chr4 132357506 132358055 -69970292 + HERVL-A1 LTR ERVL 5100 5654 0 * 2909 83 62 9 chr4 132358055 132358477 -69969870 + MLT2A1 LTR ERVL 1 444 0 22 0 0 0 chr4 132358626 132358648 -69969699 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 132359901 132359921 -69968426 + (A)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr4 132360249 132360272 -69968075 + AT_rich Low_complexity Low_complexity 1 23 0 654 137 24 8 chr4 132360454 132360578 -69967769 - L1MA7 LINE L1 0 6291 6166 613 252 174 23 chr4 132361082 132361300 -69967047 - MIR SINE MIR -10 252 2 1850 186 0 6 chr4 132361418 132361730 -69966617 - AluJb SINE Alu -1 311 2 197 348 45 34 chr4 132361776 132361865 -69966482 - L2 LINE L2 -42 3230 3141 225 351 21 0 chr4 132362244 132362338 -69966009 + MIR SINE MIR 25 120 -142 2223 104 3 0 chr4 132363488 132363785 -69964562 + AluSp SINE Alu 1 298 -15 231 271 125 10 chr4 132363787 132363883 -69964464 + MIR SINE MIR 79 185 -77 225 312 92 21 chr4 132364114 132364255 -69964092 + L2 LINE L2 3122 3272 0 34 0 0 0 chr4 132366879 132366913 -69961434 + AT_rich Low_complexity Low_complexity 1 34 0 295 315 50 0 chr4 132366977 132367158 -69961189 + L1ME LINE L1 5549 5738 -383 185 269 194 46 chr4 132368224 132368332 -69960015 + L2 LINE L2 3188 3311 -2 291 305 75 78 chr4 132368502 132368797 -69959550 + MLT1J LTR MaLR 215 508 -3 22 56 0 0 chr4 132368858 132368894 -69959453 + AT_rich Low_complexity Low_complexity 1 36 0 332 153 0 14 chr4 132369849 132369921 -69958426 + GA-rich Low_complexity Low_complexity 3 73 0 831 242 34 6 chr4 132370530 132370708 -69957639 - MER5A DNA MER1_type -6 183 1 2429 187 47 13 chr4 132370770 132371153 -69957194 + L1MA10 LINE L1 5769 6177 -157 186 43 0 0 chr4 132371153 132371176 -69957171 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2429 187 47 13 chr4 132371176 132371327 -69957020 + L1MA10 LINE L1 6177 6321 -13 601 340 121 36 chr4 132371405 132371817 -69956530 + L2 LINE L2 2826 3272 0 1624 179 32 0 chr4 132372073 132372353 -69955994 + AluJb SINE Alu 1 289 -23 1286 77 0 6 chr4 132372356 132372537 -69955810 + (GAA)n Simple_repeat Simple_repeat 1 180 0 183 80 0 0 chr4 132372539 132372564 -69955783 + (AGGGGG)n Simple_repeat Simple_repeat 2 26 0 2378 64 3 10 chr4 132374404 132374716 -69953631 + AluY SINE Alu 1 310 -1 26 30 0 0 chr4 132376038 132376071 -69952276 + AT_rich Low_complexity Low_complexity 1 33 0 316 330 30 21 chr4 132376340 132376576 -69951771 - L1ME LINE L1 -322 5799 5562 397 287 40 46 chr4 132376803 132376977 -69951370 - L1ME LINE L1 -681 5440 5268 1369 59 0 32 chr4 132377242 132377452 -69950895 - AluY SINE Alu 0 307 104 501 278 28 17 chr4 132377567 132377747 -69950600 - L1MCa LINE L1 -5166 1260 1079 1806 178 0 3 chr4 132377747 132378056 -69950291 - AluSx SINE Alu -4 308 1 1209 170 6 127 chr4 132378064 132378255 -69950092 - AluJo SINE Alu -14 298 162 1893 159 0 7 chr4 132378255 132378556 -69949791 - AluSx SINE Alu -13 299 1 1209 170 6 127 chr4 132378556 132378694 -69949653 - AluJo SINE Alu -150 162 9 509 61 0 0 chr4 132378862 132378928 -69949419 - Alu SINE Alu -243 67 2 379 322 31 44 chr4 132378962 132379189 -69949158 - L1ME LINE L1 -1466 4680 4457 184 328 24 72 chr4 132380418 132380543 -69947804 - MIR3 SINE MIR -81 127 9 205 191 95 0 chr4 132380990 132381032 -69947315 + L2 LINE L2 3268 3313 0 706 241 154 5 chr4 132383169 132383364 -69944983 - MER58A DNA MER1_type 0 224 1 944 314 140 22 chr4 132383989 132384712 -69943635 + L2 LINE L2 990 1797 -1517 186 407 65 9 chr4 132384878 132384986 -69943361 + L2 LINE L2 3143 3256 -16 222 150 0 0 chr4 132384987 132385027 -69943320 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 732 268 49 37 chr4 132385910 132386156 -69942191 + MIR SINE MIR 7 255 -7 181 288 119 0 chr4 132386295 132386354 -69941993 + L2 LINE L2 3237 3302 -11 827 316 69 58 chr4 132386705 132387303 -69941044 - L3 LINE CR1 -1 1576 973 455 293 58 11 chr4 132387308 132387482 -69940865 - MER58A DNA MER1_type -4 220 39 787 334 143 21 chr4 132387512 132387994 -69940353 - L3 LINE CR1 -634 943 403 248 357 179 9 chr4 132388108 132388332 -69940015 + L3 LINE CR1 1312 1573 -4 2896 240 42 59 chr4 132389852 132390791 -69937556 + L1MB7 LINE L1 1 923 -5619 1785 225 151 24 chr4 132390796 132391270 -69937077 + MER50 LTR ERV1 10 583 -151 249 33 0 0 chr4 132391270 132391300 -69937047 + (TTTCC)n Simple_repeat Simple_repeat 2 31 0 1785 225 151 24 chr4 132391300 132391448 -69936899 + MER50 LTR ERV1 583 711 -23 1203 209 73 11 chr4 132391460 132391815 -69936532 + L1MB7 LINE L1 930 1306 -5236 455 247 48 6 chr4 132391889 132392055 -69936292 - L1MB7 LINE L1 -2646 3998 3826 * 6287 212 33 44 chr4 132392053 132394770 -69933577 + L1MB7 LINE L1 3988 6666 -16 339 167 51 39 chr4 132395076 132395154 -69933193 + MLT1K LTR MaLR 509 587 -1 21 0 0 0 chr4 132395632 132395653 -69932694 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 132395841 132395870 -69932477 + AT_rich Low_complexity Low_complexity 1 29 0 1895 139 4 0 chr4 132396205 132396521 -69931826 - AluSx SINE Alu 0 317 1 198 174 0 0 chr4 132396615 132396661 -69931686 + GA-rich Low_complexity Low_complexity 1 46 0 642 261 65 16 chr4 132398428 132398612 -69929735 + LTR16A1 LTR ERVL 6 198 -259 540 204 49 68 chr4 132398663 132398825 -69929522 + LTR16A1 LTR ERVL 287 445 -12 501 273 76 5 chr4 132399802 132400000 -69928347 + L1ME LINE L1 5508 5719 -402 464 406 38 9 chr4 132400482 132400797 -69927550 - L2 LINE L2 -353 2961 2638 210 363 108 19 chr4 132401497 132401654 -69926693 - MIR SINE MIR -22 240 70 255 322 0 129 chr4 132401743 132401914 -69926433 + L2 LINE L2 3042 3190 -82 62 44 0 0 chr4 132401934 132402024 -69926323 + AT_rich Low_complexity Low_complexity 1 90 0 252 59 0 0 chr4 132403819 132403853 -69924494 + (CA)n Simple_repeat Simple_repeat 2 35 0 1750 123 85 31 chr4 132404264 132404582 -69923765 - LTR10A LTR ERV1 -61 548 214 318 216 125 11 chr4 132404604 132404692 -69923655 - LTR10A LTR ERV1 -511 98 1 195 224 12 0 chr4 132404935 132404991 -69923356 + MIR SINE MIR 98 153 -109 29 90 0 0 chr4 132405006 132405084 -69923263 + AT_rich Low_complexity Low_complexity 1 78 0 4603 125 50 5 chr4 132405178 132405924 -69922423 + MER4E LTR ERV1 1 779 0 225 0 0 0 chr4 132406996 132407021 -69921326 + (TC)n Simple_repeat Simple_repeat 2 26 0 1689 169 3 10 chr4 132407021 132407316 -69921031 - AluJb SINE Alu -19 293 1 369 43 0 0 chr4 132407339 132407386 -69920961 + (CA)n Simple_repeat Simple_repeat 2 48 0 3907 157 78 7 chr4 132407842 132408611 -69919736 + LTR1B LTR ERV1 3 826 0 312 331 143 0 chr4 132410224 132410357 -69917990 - MIR SINE MIR -65 197 46 318 250 10 29 chr4 132410514 132410618 -69917729 + MER94 DNA DNA 1 102 -32 47 19 0 0 chr4 132410718 132410772 -69917575 + AT_rich Low_complexity Low_complexity 1 54 0 199 301 140 21 chr4 132410796 132410939 -69917408 - MIR SINE MIR -56 206 47 483 325 121 55 chr4 132411282 132412009 -69916338 + HAL1 LINE L1 825 1599 -908 338 283 65 71 chr4 132412095 132412279 -69916068 - MLT1J LTR MaLR -106 405 223 411 301 119 5 chr4 132412956 132413149 -69915198 + MIR SINE MIR 34 248 -14 530 263 137 43 chr4 132413698 132413976 -69914371 - L3 LINE CR1 -690 887 584 238 302 62 56 chr4 132414642 132414821 -69913526 + L2 LINE L2 3132 3311 -2 237 333 11 11 chr4 132414949 132415039 -69913308 - MIR3 SINE MIR -9 199 110 809 127 0 0 chr4 132415079 132415197 -69913150 + FLAM_C SINE Alu 2 119 -14 32 0 0 0 chr4 132415197 132415229 -69913118 + AT_rich Low_complexity Low_complexity 1 32 0 1757 203 28 0 chr4 132416006 132416370 -69911977 - L1MB1 LINE L1 -52 6116 5743 386 328 41 0 chr4 132416500 132416622 -69911725 - MIR SINE MIR -123 139 13 1213 216 12 39 chr4 132416735 132416989 -69911358 + AluJo SINE Alu 1 247 -65 400 206 11 22 chr4 132417557 132417649 -69910698 + LTR67 LTR ERVL 401 491 -66 648 266 162 0 chr4 132417655 132417877 -69910470 + MIR SINE MIR 1 258 -4 237 111 111 97 chr4 132417917 132417989 -69910358 - MIR SINE MIR -79 183 111 249 261 39 110 chr4 132419354 132419569 -69908778 - MIR SINE MIR -50 212 12 271 262 16 0 chr4 132419784 132419845 -69908502 + L2 LINE L2 3211 3272 0 810 148 16 0 chr4 132420304 132420432 -69907915 - FLAM_A SINE Alu 0 133 4 1518 180 73 45 chr4 132420538 132420893 -69907454 + MLT1A1 LTR MaLR 1 365 0 475 367 17 11 chr4 132420937 132421117 -69907230 - MIR SINE MIR -71 191 11 458 311 48 56 chr4 132421330 132421581 -69906766 - MIR SINE MIR -10 252 4 418 321 141 0 chr4 132422821 132423005 -69905342 - MIR SINE MIR -4 258 49 982 278 48 14 chr4 132423202 132423356 -69904991 + MLT1A1 LTR MaLR 1 148 -217 2162 77 0 4 chr4 132423356 132423630 -69904717 + AluY SINE Alu 1 273 -38 982 278 48 14 chr4 132423630 132423828 -69904519 + MLT1A1 LTR MaLR 148 365 0 222 226 11 118 chr4 132423828 132423921 -69904426 - MER5A DNA MER1_type -93 96 14 1041 249 8 4 chr4 132424136 132424373 -69903974 + L1MEc LINE L1 37 274 -6122 2196 253 38 22 chr4 132424392 132425069 -69903278 + L1MEc LINE L1 331 1018 -5378 2069 177 30 22 chr4 132425091 132425493 -69902854 + MER45B DNA AcHobo 393 797 -243 244 185 15 15 chr4 132426629 132426694 -69901653 + (TA)n Simple_repeat Simple_repeat 1 65 0 1591 158 51 71 chr4 132426790 132427177 -69901170 - MSTB1 LTR MaLR 0 426 6 282 29 0 0 chr4 132427480 132427515 -69900832 + (TG)n Simple_repeat Simple_repeat 1 35 0 279 54 0 0 chr4 132427515 132427552 -69900795 + (GA)n Simple_repeat Simple_repeat 2 38 0 192 97 0 0 chr4 132427694 132427725 -69900622 + (GA)n Simple_repeat Simple_repeat 2 32 0 25 31 0 0 chr4 132427867 132427899 -69900448 + AT_rich Low_complexity Low_complexity 1 32 0 209 267 133 33 chr4 132428481 132428571 -69899776 - L3 LINE CR1 -102 1475 1377 23 54 0 0 chr4 132428586 132428623 -69899724 + AT_rich Low_complexity Low_complexity 1 37 0 2528 52 0 3 chr4 132428704 132429011 -69899336 - AluY SINE Alu -5 306 1 2811 237 62 25 chr4 132429157 132430168 -69898179 - L1ME1 LINE L1 -2 6164 5119 280 290 168 38 chr4 132431756 132431887 -69896460 + MIR SINE MIR 88 235 -27 1593 56 9 5 chr4 132431891 132432106 -69896241 - AluY SINE Alu -4 307 92 205 358 28 18 chr4 132432349 132432458 -69895889 - L2 LINE L2 -2938 376 267 458 319 128 5 chr4 132432873 132433077 -69895270 - MIR SINE MIR -2 260 32 780 295 47 24 chr4 132433775 132433951 -69894396 + MIR SINE MIR 3 188 -74 1650 152 113 12 chr4 132433951 132434279 -69894068 + MER46B DNA MER2_type 1 236 0 780 295 47 24 chr4 132434279 132434356 -69893991 + MIR SINE MIR 188 262 0 21 0 0 0 chr4 132434658 132434679 -69893668 + AT_rich Low_complexity Low_complexity 1 21 0 36 53 0 0 chr4 132434857 132434914 -69893433 + AT_rich Low_complexity Low_complexity 1 57 0 5583 200 52 21 chr4 132435090 132436501 -69891846 + Charlie1a DNA MER1_type 1 1455 0 213 208 0 0 chr4 132437874 132437917 -69890430 + MIR SINE MIR 116 158 -104 1675 228 118 66 chr4 132438622 132439375 -69888972 - LTR50 LTR ERVL 0 795 4 426 317 134 39 chr4 132439558 132439968 -69888379 + HAL1 LINE L1 1093 1541 -966 4041 96 5 0 chr4 132440916 132441467 -69886880 + MER41A LTR ERV1 1 554 0 308 145 342 0 chr4 132441467 132441543 -69886804 + MER41A-int LTR ERV1 1 102 -5844 5855 122 137 4 chr4 132441552 132442528 -69885819 + MER41A-int LTR ERV1 1 3250 -4566 441 0 0 0 chr4 132442532 132442581 -69885766 + (TG)n Simple_repeat Simple_repeat 1 49 0 12402 114 20 25 chr4 132442585 132445528 -69882819 + MER41A-int LTR ERV1 1364 5944 -2 3371 92 83 17 chr4 132445528 132446047 -69882300 + MER41A LTR ERV1 1 553 -1 3039 159 19 82 chr4 132446069 132446737 -69881610 + LTR8 LTR ERV1 1 626 -65 180 77 0 0 chr4 132446878 132446904 -69881443 + (T)n Simple_repeat Simple_repeat 1 26 0 271 221 39 0 chr4 132447784 132447861 -69880486 + (TAAA)n Simple_repeat Simple_repeat 4 83 0 929 164 31 0 chr4 132448173 132448332 -69880015 - MER58B DNA MER1_type -1 340 177 791 291 170 17 chr4 132448593 132449271 -69879076 + L2 LINE L2 2480 3277 -36 26 0 0 0 chr4 132449274 132449300 -69879047 + AT_rich Low_complexity Low_complexity 1 26 0 375 98 0 0 chr4 132449432 132449493 -69878854 + (TG)n Simple_repeat Simple_repeat 2 62 0 1995 113 27 7 chr4 132449540 132449833 -69878514 + AluSx SINE Alu 1 299 -13 29 101 0 0 chr4 132450725 132450824 -69877523 + AT_rich Low_complexity Low_complexity 1 99 0 37 0 0 0 chr4 132450996 132451033 -69877314 + AT_rich Low_complexity Low_complexity 1 37 0 309 321 19 0 chr4 132452084 132452190 -69876157 + MLT1L LTR MaLR 169 276 -339 22 80 0 0 chr4 132454161 132454211 -69874136 + AT_rich Low_complexity Low_complexity 1 50 0 408 277 90 15 chr4 132454670 132454867 -69873480 + L1ME LINE L1 5325 5557 -564 221 204 0 20 chr4 132455072 132455121 -69873226 - L2 LINE L2 -1 3312 3265 28 22 0 22 chr4 132455169 132455189 -69873158 + AT_rich Low_complexity Low_complexity 1 20 -25 1695 97 0 0 chr4 132455189 132455415 -69872932 + AluSg/x SINE Alu 87 312 0 28 22 0 22 chr4 132455415 132455440 -69872907 + AT_rich Low_complexity Low_complexity 20 45 0 1685 164 34 108 chr4 132455459 132456047 -69872300 - MLT2A2 LTR ERVL 0 554 1 1913 182 4 1 chr4 132456999 132457371 -69870976 - L1MB3 LINE L1 -204 5962 5583 243 157 0 0 chr4 132457371 132457422 -69870925 + L1MB4 LINE L1 6130 6180 0 238 374 65 0 chr4 132457779 132457886 -69870461 + MIR SINE MIR 24 137 -71 * 280 350 66 15 chr4 132457880 132458017 -69870330 - L2 LINE L2 0 3272 3129 22 0 0 0 chr4 132458244 132458266 -69870081 + AT_rich Low_complexity Low_complexity 1 22 0 183 286 0 0 chr4 132459032 132459074 -69869273 - L2 LINE L2 -4 3309 3268 278 369 73 21 chr4 132459117 132459350 -69868997 - L2 LINE L2 -219 3053 2809 4152 155 41 8 chr4 132459381 132460378 -69867969 - L1MA5 LINE L1 -359 5941 4890 2053 75 0 0 chr4 132460378 132460644 -69867703 - L1PA8 LINE L1 0 6172 5907 4152 155 41 8 chr4 132460644 132461078 -69867269 - L1MA5 LINE L1 -1410 4890 4472 1627 180 30 3 chr4 132461078 132461416 -69866931 + L1MA5 LINE L1 5953 6300 0 188 289 0 0 chr4 132461825 132461870 -69866477 + L2 LINE L2 3264 3308 -5 299 284 60 26 chr4 132462798 132462914 -69865433 - MIR SINE MIR -21 241 122 280 330 105 29 chr4 132463101 132463310 -69865037 - MIR SINE MIR -6 256 32 1902 157 141 0 chr4 132463544 132463919 -69864428 - MSTA LTR MaLR 0 428 1 8407 157 8 36 chr4 132463959 132465424 -69862923 - MSTA-int LTR MaLR -154 1426 4 724 127 190 0 chr4 132465427 132465569 -69862778 - MSTA LTR MaLR 0 428 260 23432 152 15 26 chr4 132465569 132470664 -69857683 + L1P3 LINE L1 11 5103 -1358 2164 113 10 7 chr4 132470664 132470973 -69857374 + AluSp SINE Alu 1 310 -3 23432 152 15 26 chr4 132470973 132471241 -69857106 + L1P3 LINE L1 5103 5373 -1088 2680 87 3 5 chr4 132471341 132471709 -69856638 + L1PA8A LINE L1 5737 6103 -28 1415 139 116 12 chr4 132471748 132472006 -69856341 - MSTA LTR MaLR -143 285 1 449 149 19 65 chr4 132472424 132472531 -69855816 - MER20 DNA MER1_type 0 219 118 274 245 28 47 chr4 132472703 132472809 -69855538 + MER74A LTR ERVL 293 396 -162 512 231 33 16 chr4 132472931 132473052 -69855295 - MER20 DNA MER1_type -90 129 7 2047 93 82 25 chr4 132474839 132475192 -69853155 + THE1C LTR MaLR 3 375 0 3756 130 54 83 chr4 132475192 132475913 -69852434 + THE1C-int LTR MaLR 1 700 -880 922 281 106 27 chr4 132475924 132476678 -69851669 + L1ME1 LINE L1 2173 2946 -3269 920 241 23 36 chr4 132476687 132476994 -69851353 + L1ME1 LINE L1 3719 4021 -2194 214 259 0 0 chr4 132477018 132477035 -69851312 + (TA)n Simple_repeat Simple_repeat 1 17 -41 1768 186 86 29 chr4 132477035 132477444 -69850903 + MSTB1 LTR MaLR 1 432 0 214 259 0 0 chr4 132477444 132477484 -69850863 + (TA)n Simple_repeat Simple_repeat 16 58 0 2372 248 65 35 chr4 132477491 132478355 -69849992 + L1ME1 LINE L1 5338 6227 -8 235 331 89 8 chr4 132478460 132478584 -69849763 + L2 LINE L2 3167 3300 -13 201 196 0 0 chr4 132479353 132479399 -69848948 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 23 33 0 0 chr4 132479731 132479761 -69848586 + AT_rich Low_complexity Low_complexity 1 30 0 829 10 0 10 chr4 132480180 132480280 -69848067 + L1PA3 LINE L1 6057 6155 0 190 204 54 129 chr4 132480468 132480561 -69847786 + MIR SINE MIR 106 191 -71 198 289 16 91 chr4 132480804 132480829 -69847518 - MIR SINE MIR -136 126 101 2305 170 10 0 chr4 132480829 132481228 -69847119 + MER57A LTR ERV1 1 403 0 198 289 16 91 chr4 132481228 132481323 -69847024 - MIR SINE MIR -161 101 15 3896 206 22 16 chr4 132482352 132483239 -69845108 + L1MC3 LINE L1 6877 7769 -16 6317 85 13 9 chr4 132484237 132485563 -69842784 + L1PA10 LINE L1 4840 6166 -2 2809 126 19 5 chr4 132485656 132486084 -69842263 + MER57B LTR ERV1 1 434 0 467 290 65 37 chr4 132486178 132486395 -69841952 - MIR SINE MIR -27 235 13 30 59 0 0 chr4 132486406 132486457 -69841890 + AT_rich Low_complexity Low_complexity 1 51 0 338 302 69 6 chr4 132486598 132486757 -69841590 + L2 LINE L2 3115 3283 -30 966 269 117 61 chr4 132486923 132486980 -69841367 - MLT1H LTR MaLR 0 549 497 522 80 13 0 chr4 132486980 132487055 -69841292 + MADE1 DNA Mariner 3 78 -2 966 269 117 61 chr4 132487055 132487391 -69840956 - MLT1H LTR MaLR -52 497 134 590 131 10 20 chr4 132487434 132487533 -69840814 + MER4A LTR ERV1 1 98 -566 342 135 19 0 chr4 132487533 132487585 -69840762 + MER4A LTR ERV1 261 313 -351 1024 264 129 0 chr4 132487603 132487944 -69840403 - L2 LINE L2 -943 2371 1987 202 336 16 64 chr4 132487956 132488081 -69840266 - L3 LINE CR1 -555 1022 904 22 0 0 0 chr4 132488083 132488105 -69840242 + AT_rich Low_complexity Low_complexity 1 22 0 701 304 66 8 chr4 132488403 132488646 -69839701 - MIR SINE MIR 0 262 6 180 152 0 0 chr4 132488918 132488951 -69839396 + (CATA)n Simple_repeat Simple_repeat 3 35 0 1236 282 110 11 chr4 132490004 132490469 -69837878 - MLT1J LTR MaLR 0 511 1 238 200 20 0 chr4 132490939 132490989 -69837358 - MER65C LTR ERV1 0 461 411 378 296 43 70 chr4 132491096 132491282 -69837065 - MIR SINE MIR -62 200 20 189 311 115 0 chr4 132491374 132491435 -69836912 + MIR SINE MIR 39 106 -102 422 288 65 35 chr4 132491590 132491760 -69836587 + L3 LINE CR1 916 1090 -487 183 406 43 0 chr4 132493667 132493805 -69834542 - MIR3 SINE MIR -43 165 22 43762 43 3 2 chr4 132494081 132500229 -69828118 - L1PA4 LINE L1 -1 6154 2 2535 116 3 21 chr4 132500268 132500648 -69827699 + THE1C LTR MaLR 3 375 0 27 0 0 0 chr4 132503284 132503311 -69825036 + AT_rich Low_complexity Low_complexity 1 27 0 236 182 0 0 chr4 132504131 132504175 -69824172 - MER116 DNA Mariner -35 45 2 1564 196 72 21 chr4 132504324 132504701 -69823646 - MSTD LTR MaLR 0 396 1 6361 242 55 28 chr4 132504701 132506389 -69821958 - MSTD-int LTR MaLR 0 1735 2 1435 240 52 18 chr4 132506391 132506774 -69821573 - MSTD LTR MaLR 0 396 1 2221 170 13 60 chr4 132507297 132507750 -69820597 + MSTB1 LTR MaLR 1 432 0 306 298 117 40 chr4 132508700 132508984 -69819363 + MLT1H LTR MaLR 1 309 -286 32 0 0 0 chr4 132510041 132510073 -69818274 + AT_rich Low_complexity Low_complexity 1 32 0 2058 150 0 0 chr4 132510469 132510775 -69817572 - AluSx SINE Alu -6 306 1 4817 156 16 7 chr4 132512480 132513165 -69815182 - L1MB2 LINE L1 -3 6168 5473 180 77 0 0 chr4 132513165 132513191 -69815156 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 4817 156 16 7 chr4 132513191 132513344 -69815003 - L1MB2 LINE L1 -698 5473 5323 1941 116 220 11 chr4 132517501 132517855 -69810492 + MSTA LTR MaLR 1 428 0 198 0 0 0 chr4 132518049 132518071 -69810276 + (T)n Simple_repeat Simple_repeat 1 22 0 24 0 0 0 chr4 132518207 132518231 -69810116 + AT_rich Low_complexity Low_complexity 1 24 0 300 317 48 30 chr4 132518524 132518691 -69809656 + MIR SINE MIR 57 226 -36 4324 123 39 8 chr4 132519542 132520266 -69808081 + L1MA3 LINE L1 5454 6199 -106 261 0 0 0 chr4 132520446 132520475 -69807872 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1939 178 31 76 chr4 132520925 132521409 -69806938 + MER31B LTR ERV1 1 462 -4 524 264 168 5 chr4 132522101 132522309 -69806038 - MIR SINE MIR -6 256 15 534 226 23 106 chr4 132522725 132522942 -69805405 - L1MC4a LINE L1 -1867 5941 5743 232 190 89 0 chr4 132522946 132523025 -69805322 - Tigger6 DNA MER2_type -646 437 352 731 283 21 35 chr4 132523025 132523315 -69805032 - L1MC4a LINE L1 -2096 5712 5427 501 242 48 63 chr4 132523562 132523772 -69804575 + L1MD3 LINE L1 6100 7946 -49 190 200 0 91 chr4 132524271 132524326 -69804021 + MIR3 SINE MIR 115 164 -44 188 208 0 21 chr4 132524370 132524418 -69803929 + MER5B DNA MER1_type 132 178 0 255 184 41 0 chr4 132525952 132526001 -69802346 + LTR40b LTR ERVL 1 51 -411 1277 76 35 15 chr4 132526041 132526238 -69802109 + L1PA14 LINE L1 5960 6160 -1 488 108 29 0 chr4 132526249 132526255 -69802092 + (TA)n Simple_repeat Simple_repeat 1 5 -100 2383 75 0 33 chr4 132526255 132526562 -69801785 + AluY SINE Alu 2 298 -13 488 108 29 0 chr4 132526562 132526657 -69801690 + (TA)n Simple_repeat Simple_repeat 5 105 0 28 29 0 0 chr4 132526657 132526692 -69801655 + AT_rich Low_complexity Low_complexity 1 35 0 1537 264 40 17 chr4 132526702 132527122 -69801225 + LTR40a LTR ERVL 90 519 0 297 252 153 36 chr4 132527780 132527891 -69800456 - L2 LINE L2 0 3313 3190 183 389 130 0 chr4 132527938 132528046 -69800301 + L2 LINE L2 3192 3313 0 201 147 0 0 chr4 132528450 132528484 -69799863 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 676 197 31 0 chr4 132528485 132528612 -69799735 - FLAM_C SINE Alu -12 131 1 21 0 0 31 chr4 132528723 132528739 -69799608 + AT_rich Low_complexity Low_complexity 1 16 -15 2293 71 0 20 chr4 132528739 132529035 -69799312 - AluY SINE Alu -21 290 1 21 0 0 31 chr4 132529035 132529050 -69799297 + AT_rich Low_complexity Low_complexity 16 31 0 5062 127 105 24 chr4 132530409 132531422 -69796925 - Tigger3b DNA MER2_type -136 1095 1 359 244 8 61 chr4 132531522 132531653 -69796694 + MER103 DNA DNA 3 126 -40 683 171 8 0 chr4 132532556 132532673 -69795674 + FLAM_C SINE Alu 1 118 -15 198 0 0 0 chr4 132532676 132532698 -69795649 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 688 225 42 46 chr4 132532702 132532986 -69795361 + pTR5 LTR ERV1 738 1020 -1418 326 177 43 8 chr4 132533106 132533128 -69795219 + Alu SINE Alu 239 259 -43 3995 68 59 138 chr4 132533128 132533874 -69794473 + LTR12 LTR ERV1 1 687 -1 326 177 43 8 chr4 132533874 132533949 -69794398 + Alu SINE Alu 259 294 -8 23 0 0 0 chr4 132533983 132534006 -69794341 + AT_rich Low_complexity Low_complexity 1 23 0 669 298 20 20 chr4 132534826 132535024 -69793323 + MIR SINE MIR 1 198 -64 1902 154 58 25 chr4 132536064 132536427 -69791920 + THE1C LTR MaLR 1 375 0 1910 72 116 0 chr4 132536626 132536877 -69791470 - AluY SINE Alu -30 281 2 228 351 64 11 chr4 132537518 132537612 -69790735 + MIR SINE MIR 21 119 -143 2648 224 134 14 chr4 132537613 132538492 -69789855 + L1MD2 LINE L1 3931 4915 -1231 567 266 25 46 chr4 132538494 132538731 -69789616 + L1MD2 LINE L1 5255 5486 -680 1012 274 8 0 chr4 132538734 132538989 -69789358 + L1MC/D LINE L1 9 265 -6144 354 227 45 45 chr4 132539060 132539170 -69789177 + L1MC/D LINE L1 3344 3453 -2953 2645 221 69 40 chr4 132539203 132541171 -69787176 + L1MC/D LINE L1 3725 5854 -743 506 16 16 0 chr4 132541184 132541247 -69787100 + (TTCCC)n Simple_repeat Simple_repeat 1 64 0 1621 135 39 28 chr4 132541669 132541951 -69786396 - AluSx SINE Alu -27 285 1 716 151 40 24 chr4 132542006 132542132 -69786215 + FLAM_C SINE Alu 1 128 -5 937 201 45 0 chr4 132542145 132542344 -69786003 + L1MD2 LINE L1 5551 5758 -601 872 191 43 35 chr4 132542344 132542574 -69785773 - L1ME1 LINE L1 -189 5977 5746 * 2423 178 37 54 chr4 132542572 132543167 -69785180 + L1MD2 LINE L1 5774 6358 -1 2318 210 24 17 chr4 132543156 132543689 -69784658 + L1ME1 LINE L1 5469 6005 -161 * 488 90 39 13 chr4 132543689 132543767 -69784580 + MADE1 DNA Mariner 1 80 0 535 249 87 64 chr4 132543786 132544195 -69784152 + L1ME3A LINE L1 4485 4932 -1214 1833 258 117 29 chr4 132544206 132545235 -69783112 + L1ME3A LINE L1 5030 6157 -13 22 35 0 0 chr4 132545480 132545509 -69782838 + AT_rich Low_complexity Low_complexity 1 29 0 260 297 0 0 chr4 132545699 132545763 -69782584 - MER8 DNA MER2_type -65 174 111 * 408 161 11 13 chr4 132545755 132545843 -69782504 - MER2 DNA MER2_type -152 87 1 34 65 0 0 chr4 132546018 132546080 -69782267 + AT_rich Low_complexity Low_complexity 1 62 0 1023 227 101 31 chr4 132546167 132546484 -69781863 + MER2 DNA MER2_type 2 340 -5 22 56 0 0 chr4 132547536 132547572 -69780775 + AT_rich Low_complexity Low_complexity 1 36 0 237 108 0 0 chr4 132551091 132551128 -69777219 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 625 311 94 18 chr4 132551128 132551456 -69776891 - L2 LINE L2 -13 3300 2948 214 160 0 40 chr4 132555131 132555181 -69773166 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 22 0 0 0 chr4 132555452 132555474 -69772873 + AT_rich Low_complexity Low_complexity 1 22 0 307 332 144 27 chr4 132555882 132556030 -69772317 - L2 LINE L2 -590 2724 2595 216 67 0 0 chr4 132556030 132556060 -69772287 + (CAG)n Simple_repeat Simple_repeat 3 32 0 307 332 144 27 chr4 132556060 132556285 -69772062 - L2 LINE L2 -719 2595 2307 380 304 125 18 chr4 132556928 132557096 -69771251 - MIR SINE MIR -11 251 66 213 215 0 65 chr4 132557660 132557753 -69770594 + T-rich Low_complexity Low_complexity 4 90 0 227 204 19 0 chr4 132558018 132558072 -69770275 + L1ME LINE L1 5868 5922 -199 329 314 98 56 chr4 132558661 132558999 -69769348 + L1ME LINE L1 4481 4832 -1314 300 318 91 29 chr4 132559324 132559664 -69768683 + L1ME LINE L1 5280 5640 -481 588 256 84 32 chr4 132559750 132560054 -69768293 + L1ME2 LINE L1 5597 5908 -270 818 233 28 6 chr4 132560059 132560239 -69768108 - MIR SINE MIR -21 241 58 208 171 24 0 chr4 132560789 132560830 -69767517 + A-rich Low_complexity Low_complexity 3 44 0 247 232 85 49 chr4 132562088 132562170 -69766177 - L2 LINE L2 -2 3270 3186 410 309 125 59 chr4 132562448 132562785 -69765562 + L2 LINE L2 2869 3227 -45 333 355 35 0 chr4 132563482 132563651 -69764696 - L2 LINE L2 -523 2791 2617 643 259 134 10 chr4 132563711 132563912 -69764435 - MIR SINE MIR -8 254 29 252 173 19 19 chr4 132563918 132563970 -69764377 - MER81 DNA DNA -1 113 62 2527 263 84 16 chr4 132564189 132564588 -69763759 - L1M4 LINE L1 -3015 3131 2761 2406 29 0 0 chr4 132564588 132564865 -69763482 + AluYb8 SINE Alu 41 317 -1 2527 263 84 16 chr4 132564865 132565422 -69762925 - L1M4 LINE L1 -3385 2761 2110 347 282 45 0 chr4 132565426 132565536 -69762811 - L1MC/D LINE L1 -2118 5690 5576 244 233 70 0 chr4 132565561 132565647 -69762700 - L1MC4 LINE L1 -1339 6703 6612 1123 136 91 23 chr4 132565826 132566047 -69762300 - L1MA4 LINE L1 -16 6284 6049 404 147 0 0 chr4 132566220 132566288 -69762059 + AluS SINE Alu 233 300 -2 180 239 22 22 chr4 132566862 132566908 -69761439 + MER5B DNA MER1_type 62 107 -71 666 244 86 123 chr4 132567352 132567815 -69760532 + L2 LINE L2 2868 3313 0 23 68 0 0 chr4 132568250 132568294 -69760053 + AT_rich Low_complexity Low_complexity 1 44 0 679 149 21 14 chr4 132568389 132568530 -69759817 - L1MA8 LINE L1 -2 6289 6148 823 249 72 30 chr4 132569261 132569566 -69758781 + L1MCc LINE L1 1033 1350 -5073 * 2698 219 70 63 chr4 132569551 132571027 -69757320 + L1ME1 LINE L1 4670 6146 -20 462 331 75 93 chr4 132571317 132571758 -69756589 + L2 LINE L2 2840 3272 0 1881 207 77 45 chr4 132571876 132572368 -69755979 + MLT2B1 LTR ERVL 1 508 -12 208 196 22 0 chr4 132573564 132573610 -69754737 + GA-rich Low_complexity Low_complexity 4 50 0 2871 6 0 0 chr4 132573724 132574038 -69754309 + AluYb8 SINE Alu 1 314 -4 1765 137 38 67 chr4 132574384 132574756 -69753591 + MER46B DNA MER2_type 1 236 0 1617 195 28 25 chr4 132575015 132575379 -69752968 + MLT1A1 LTR MaLR 1 365 0 557 328 49 15 chr4 132575409 132575613 -69752734 - MIR SINE MIR -50 212 2 21 0 0 0 chr4 132575931 132575952 -69752395 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 132577534 132577562 -69750785 + AT_rich Low_complexity Low_complexity 1 28 0 582 274 98 40 chr4 132578485 132579161 -69749186 + L1MCc LINE L1 1515 2229 -4893 670 150 132 22 chr4 132579185 132579412 -69748935 + Charlie1 DNA MER1_type 2465 2716 -45 230 238 168 49 chr4 132579412 132579555 -69748792 + L2 LINE L2 2483 2642 -672 * 819 305 93 7 chr4 132579554 132579856 -69748491 - L2 LINE L2 -882 2432 2105 1152 220 17 55 chr4 132579856 132580262 -69748085 + MSTB2 LTR MaLR 1 456 -1 483 246 145 140 chr4 132580271 132581062 -69747285 - L2 LINE L2 -1234 2080 1286 872 256 10 0 chr4 132581064 132581259 -69747088 + Charlie1b DNA MER1_type 2 198 -325 735 206 50 14 chr4 132581265 132581484 -69746863 - L1M4 LINE L1 -1536 4610 4384 22 35 0 0 chr4 132582364 132582393 -69745954 + AT_rich Low_complexity Low_complexity 1 29 0 778 303 167 35 chr4 132582393 132583119 -69745228 - L2 LINE L2 0 3313 2444 298 233 120 92 chr4 132583158 132583480 -69744867 - MLT1H LTR MaLR 0 549 100 2143 93 7 0 chr4 132583492 132583772 -69744575 - AluSp SINE Alu -27 286 5 592 157 139 0 chr4 132584210 132584325 -69744022 - FLAM_C SINE Alu -12 131 1 436 232 246 21 chr4 132584958 132585100 -69743247 - MER5A DNA MER1_type 0 189 16 249 352 11 0 chr4 132585310 132585398 -69742949 + L2 LINE L2 3225 3313 0 372 331 12 52 chr4 132586065 132586237 -69742110 - Charlie8 DNA MER1_type -2141 276 112 2185 100 0 0 chr4 132587326 132587639 -69740708 + AluY SINE Alu 1 313 0 416 253 50 0 chr4 132588647 132588746 -69739601 + L2 LINE L2 3192 3295 -18 2207 166 0 3 chr4 132589186 132589553 -69738794 - MER47A DNA MER2_type 0 366 1 399 41 0 0 chr4 132591199 132591248 -69737099 + (CA)n Simple_repeat Simple_repeat 2 50 0 970 185 40 0 chr4 132591249 132591422 -69736925 + MIR SINE MIR 53 232 -30 180 0 0 0 chr4 132591575 132591595 -69736752 + (CA)n Simple_repeat Simple_repeat 1 20 0 435 290 193 56 chr4 132594895 132595298 -69733049 + L1M2 LINE L1 444 931 -5918 243 0 0 0 chr4 132595298 132595325 -69733022 + (CCCCCG)n Simple_repeat Simple_repeat 3 29 0 435 290 193 56 chr4 132595325 132595424 -69732923 + L1M2 LINE L1 931 1015 -5834 1504 228 87 19 chr4 132597198 132597738 -69730609 + MER114 LTR ERV 1 577 -71 783 27 45 0 chr4 132598180 132598292 -69730055 + (TATATG)n Simple_repeat Simple_repeat 4 120 0 1563 159 96 0 chr4 132600159 132600430 -69727917 - AluJb SINE Alu -15 297 1 487 270 54 60 chr4 132600594 132600986 -69727361 + MLT1F LTR MaLR 1 417 -173 2438 65 0 23 chr4 132601359 132601669 -69726678 + AluY SINE Alu 1 303 -8 255 268 127 96 chr4 132602534 132602668 -69725679 - MLT1J LTR MaLR -68 443 315 390 270 9 17 chr4 132602668 132602783 -69725564 - MER81 DNA DNA 0 114 1 255 268 127 96 chr4 132602783 132603074 -69725273 - MLT1J LTR MaLR -196 315 5 36 19 0 19 chr4 132604125 132604162 -69724185 + AT_rich Low_complexity Low_complexity 1 38 -15 2089 115 3 11 chr4 132604162 132604449 -69723898 - AluSx SINE Alu -27 285 1 36 19 0 19 chr4 132604449 132604465 -69723882 + AT_rich Low_complexity Low_complexity 38 53 0 1153 189 41 14 chr4 132604660 132604919 -69723428 + MSTA LTR MaLR 1 268 -164 604 191 137 49 chr4 132604907 132605090 -69723257 - MLT1H LTR MaLR -286 263 65 * 1423 196 4 4 chr4 132605265 132605545 -69722802 + L1PB4 LINE L1 5877 6156 0 1952 210 29 157 chr4 132605545 132606430 -69721917 + MLT1-int LTR MaLR 280 1051 -320 224 312 113 43 chr4 132607103 132607244 -69721103 + L2 LINE L2 3122 3272 0 186 43 0 0 chr4 132609744 132609767 -69718580 + (T)n Simple_repeat Simple_repeat 1 23 0 208 360 80 32 chr4 132609945 132610070 -69718277 + L2 LINE L2 3142 3272 0 240 346 114 30 chr4 132610181 132610577 -69717770 + L2 LINE L2 2368 2796 -518 22 35 0 0 chr4 132610793 132610822 -69717525 + AT_rich Low_complexity Low_complexity 1 29 0 35 54 0 0 chr4 132611550 132611606 -69716741 + AT_rich Low_complexity Low_complexity 1 56 0 395 372 99 0 chr4 132611876 132612099 -69716248 - MIR SINE MIR -15 247 3 181 346 10 20 chr4 132612128 132612229 -69716118 + L3 LINE CR1 1444 1543 -34 247 331 108 6 chr4 132612258 132612415 -69715932 + L2 LINE L2 2569 2741 -573 189 0 0 0 chr4 132612805 132612826 -69715521 + (TA)n Simple_repeat Simple_repeat 2 22 0 2125 98 0 26 chr4 132612826 132613131 -69715216 - AluSx SINE Alu -11 301 5 296 224 92 0 chr4 132613188 132613264 -69715083 + L2 LINE L2 3230 3312 -1 351 0 0 0 chr4 132614120 132614159 -69714188 + (TG)n Simple_repeat Simple_repeat 2 40 0 273 156 0 0 chr4 132614472 132614517 -69713830 - L1ME LINE L1 -467 5654 5610 207 364 85 0 chr4 132614547 132614676 -69713671 + L2 LINE L2 1798 1937 -1377 1580 154 52 73 chr4 132615305 132615688 -69712659 + THE1C LTR MaLR 1 375 0 1979 117 0 0 chr4 132616351 132616624 -69711723 + AluY SINE Alu 21 293 -18 216 0 0 0 chr4 132617196 132617220 -69711127 + (T)n Simple_repeat Simple_repeat 1 24 0 226 323 153 0 chr4 132617232 132617356 -69710991 - MER5B DNA MER1_type -29 149 7 566 54 0 43 chr4 132617384 132617476 -69710871 + (TC)n Simple_repeat Simple_repeat 1 88 0 237 291 18 55 chr4 132617697 132617862 -69710485 + L1ME LINE L1 5598 5756 -365 21 36 0 0 chr4 132618190 132618218 -69710129 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 132618396 132618424 -69709923 + AT_rich Low_complexity Low_complexity 1 28 0 441 282 47 18 chr4 132618832 132619002 -69709345 - LTR16C LTR ERVL -9 482 308 2844 16 0 0 chr4 132619502 132619812 -69708535 + AluYb8 SINE Alu 1 310 -8 3035 81 37 2 chr4 132619855 132620285 -69708062 + L1PA8 LINE L1 5728 6172 0 22 0 0 0 chr4 132620375 132620397 -69707950 + AT_rich Low_complexity Low_complexity 1 22 0 1647 145 28 50 chr4 132620521 132620838 -69707509 - AluSg SINE Alu 0 310 1 270 227 16 8 chr4 132621295 132621423 -69706924 + (TA)n Simple_repeat Simple_repeat 2 130 0 302 227 13 13 chr4 132621667 132621817 -69706530 + (TA)n Simple_repeat Simple_repeat 2 151 0 21 0 0 0 chr4 132622162 132622183 -69706164 + AT_rich Low_complexity Low_complexity 1 21 0 223 352 45 40 chr4 132624837 132625013 -69703334 + L2 LINE L2 2796 2972 -342 816 153 18 6 chr4 132625138 132625308 -69703039 + CT-rich Low_complexity Low_complexity 4 175 0 248 276 0 8 chr4 132625806 132625929 -69702418 + (CA)n Simple_repeat Simple_repeat 1 122 0 343 282 17 26 chr4 132625979 132626096 -69702251 - L1M4 LINE L1 -522 5656 5541 820 278 4 20 chr4 132627437 132627682 -69700665 - MIR SINE MIR -6 256 16 211 352 22 33 chr4 132628223 132628314 -69700033 - L2 LINE L2 -10 3262 3173 297 350 127 15 chr4 132628939 132629199 -69699148 + L2 LINE L2 2980 3268 -45 2149 130 0 3 chr4 132629635 132629934 -69698413 - AluSg SINE Alu -10 300 3 223 297 119 20 chr4 132630254 132630355 -69697992 + MIR SINE MIR 44 154 -108 1797 212 99 28 chr4 132630796 132631300 -69697047 + MLT1F LTR MaLR 3 542 0 21 57 0 0 chr4 132631732 132631767 -69696580 + AT_rich Low_complexity Low_complexity 1 35 0 500 251 251 6 chr4 132631847 132632030 -69696317 + MIR SINE MIR 8 235 -27 21 0 0 0 chr4 132632647 132632668 -69695679 + AT_rich Low_complexity Low_complexity 1 21 0 681 150 17 8 chr4 132632746 132632866 -69695481 + MLT1A1 LTR MaLR 5 125 -240 22 0 0 0 chr4 132633556 132633578 -69694769 + AT_rich Low_complexity Low_complexity 1 22 0 1308 133 99 108 chr4 132634275 132634627 -69693720 - THE1C LTR MaLR -26 349 1 2121 139 0 0 chr4 132634869 132635178 -69693169 + AluSx SINE Alu 1 309 -3 44 20 0 0 chr4 132635455 132635506 -69692841 + AT_rich Low_complexity Low_complexity 1 51 0 270 0 0 0 chr4 132635542 132635572 -69692775 + (TA)n Simple_repeat Simple_repeat 1 30 0 181 233 105 58 chr4 132635683 132635769 -69692578 + MIR3 SINE MIR 119 208 0 354 304 129 13 chr4 132635878 132636102 -69692245 - MIR SINE MIR 0 262 13 361 282 92 0 chr4 132636451 132636593 -69691754 - MER112 DNA MER1_type -27 233 79 777 311 155 33 chr4 132637063 132637226 -69691121 + L2 LINE L2 2547 2689 -624 2019 125 20 3 chr4 132637226 132637530 -69690817 + AluSc SINE Alu 1 309 0 777 311 155 33 chr4 132637530 132638035 -69690312 + L2 LINE L2 2689 3313 0 190 291 39 39 chr4 132638032 132638135 -69690212 + MIR SINE MIR 148 250 -12 * 1402 187 22 122 chr4 132638244 132638704 -69689643 + MLT2D LTR ERVL 1 414 0 258 350 63 30 chr4 132638851 132639088 -69689259 - MLT1L LTR MaLR -203 412 168 2063 213 121 51 chr4 132639229 132639835 -69688512 - MLT1E1 LTR MaLR -6 648 1 210 269 15 0 chr4 132640049 132640116 -69688231 + MIR SINE MIR 184 251 -11 1772 180 7 0 chr4 132640141 132640435 -69687912 - AluSx SINE Alu -16 296 1 30 27 0 0 chr4 132640631 132640668 -69687679 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 132640737 132640772 -69687575 + AT_rich Low_complexity Low_complexity 1 35 0 200 295 26 13 chr4 132641068 132641146 -69687201 + L2 LINE L2 3190 3268 -4 2070 168 83 32 chr4 132641790 132642225 -69686122 + MSTB2 LTR MaLR 1 457 0 1490 231 67 78 chr4 132642509 132643124 -69685223 + MLT1E3 LTR MaLR 1 608 -16 219 349 23 0 chr4 132644136 132644222 -69684125 - L2 LINE L2 -1368 1946 1859 492 268 24 36 chr4 132645794 132645973 -69682374 - MIR3 SINE MIR -41 167 31 706 293 162 37 chr4 132646001 132646465 -69681882 - MER90 LTR ERV1 -16 559 38 234 403 97 19 chr4 132646495 132646649 -69681698 + L3 LINE CR1 1285 1450 -127 2278 192 37 56 chr4 132647214 132647730 -69680617 + LTR53 LTR ERVL 7 512 -7 1850 164 145 0 chr4 132649967 132650339 -69678008 - MSTB1 LTR MaLR 0 432 7 193 301 282 6 chr4 132650561 132650717 -69677630 - MIR SINE MIR -30 232 34 180 0 0 0 chr4 132651808 132651828 -69676519 + (A)n Simple_repeat Simple_repeat 1 20 0 48 18 0 0 chr4 132653237 132653292 -69675055 + AT_rich Low_complexity Low_complexity 1 55 0 5903 92 14 25 chr4 132653292 132654237 -69674110 - L1PB2 LINE L1 -2 6149 5195 1956 121 0 84 chr4 132654237 132654569 -69673778 - AluSx SINE Alu -8 304 1 5903 92 14 25 chr4 132654569 132655069 -69673278 - L1PB2 LINE L1 -956 5195 4691 775 217 27 62 chr4 132655072 132655330 -69673017 + L1P LINE L1 5063 5311 -835 8053 210 53 21 chr4 132655347 132657938 -69670409 - L1PBa LINE L1 -1464 5398 2675 2077 146 79 85 chr4 132658323 132658475 -69669872 - MER6A DNA MER2_type -260 605 454 1856 150 3 17 chr4 132658475 132658762 -69669585 + AluSx SINE Alu 2 284 -28 2077 146 79 85 chr4 132658762 132659104 -69669243 - MER6A DNA MER2_type -411 454 114 1424 193 75 59 chr4 132659229 132659551 -69668796 - MER6A DNA MER2_type -277 328 2 228 86 0 0 chr4 132659955 132659990 -69668357 + (CAAAAA)n Simple_repeat Simple_repeat 4 38 0 360 330 107 45 chr4 132660319 132660701 -69667646 - L1MEc LINE L1 -4730 1666 1261 207 0 0 0 chr4 132660781 132660804 -69667543 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2040 84 0 4 chr4 132660843 132661106 -69667241 - AluY SINE Alu -9 302 41 1465 281 132 2 chr4 132661165 132661635 -69666712 + MLT1E LTR MaLR 59 589 -4 2013 130 10 10 chr4 132661635 132661943 -69666404 + AluSx SINE Alu 1 308 -4 1854 154 75 24 chr4 132662740 132662795 -69665552 - MLT1B LTR MaLR 0 390 339 2079 133 3 48 chr4 132662795 132663148 -69665199 + MER1B DNA MER1_type 1 337 0 1854 154 75 24 chr4 132663148 132663463 -69664884 - MLT1B LTR MaLR -51 339 1 317 333 110 21 chr4 132665361 132665598 -69662749 + L2 LINE L2 2316 2573 -741 1301 210 88 26 chr4 132665674 132666142 -69662205 + MLT1E LTR MaLR 3 593 0 21 0 0 0 chr4 132666180 132666201 -69662146 + AT_rich Low_complexity Low_complexity 1 21 0 1550 218 84 16 chr4 132666214 132666585 -69661762 + MSTD LTR MaLR 1 396 0 457 350 155 21 chr4 132666764 132667055 -69661292 + L2 LINE L2 2943 3272 0 728 222 44 6 chr4 132668816 132668996 -69659351 - MER44D DNA MER2_type -59 546 488 2314 92 3 10 chr4 132670482 132670796 -69657551 - AluSp SINE Alu 0 313 2 23 0 0 0 chr4 132671879 132671902 -69656445 + AT_rich Low_complexity Low_complexity 1 23 0 208 189 0 0 chr4 132672307 132672344 -69656003 - L2 LINE L2 -219 3053 3017 21 57 0 0 chr4 132673293 132673328 -69655019 + AT_rich Low_complexity Low_complexity 1 35 0 234 220 17 0 chr4 132673346 132673405 -69654942 + (TA)n Simple_repeat Simple_repeat 1 60 0 6496 148 16 84 chr4 132674318 132675746 -69652601 - L1P LINE L1 -2297 3849 2519 5951 111 12 4 chr4 132675746 132676726 -69651621 + L1PA10 LINE L1 5172 6159 -9 223 266 96 64 chr4 132677614 132677708 -69650639 - L2 LINE L2 -9 3304 3208 22 35 0 0 chr4 132677721 132677750 -69650597 + AT_rich Low_complexity Low_complexity 1 29 0 217 246 0 53 chr4 132678015 132678072 -69650275 + L2 LINE L2 3210 3263 -9 774 167 21 7 chr4 132680356 132680500 -69647847 + L1PB4 LINE L1 6004 6149 -7 782 132 107 2 chr4 132681088 132681292 -69647055 + L1MA5A LINE L1 6059 6296 -4 2179 62 0 4 chr4 132681683 132681956 -69646391 + AluY SINE Alu 40 311 0 305 233 117 19 chr4 132682850 132682953 -69645394 + L2 LINE L2 3185 3297 -16 297 327 75 31 chr4 132682982 132683208 -69645139 + L2 LINE L2 1759 1994 -1320 23 0 0 0 chr4 132683358 132683381 -69644966 + AT_rich Low_complexity Low_complexity 1 23 0 2252 106 3 9 chr4 132683929 132684259 -69644088 + L1PB1 LINE L1 5821 6148 -3 24 32 0 0 chr4 132684260 132684291 -69644056 + AT_rich Low_complexity Low_complexity 1 31 0 185 363 50 25 chr4 132684311 132684471 -69643876 + L2 LINE L2 2576 2739 -575 1108 90 14 0 chr4 132684533 132684678 -69643669 - AluY SINE Alu -164 147 1 226 329 29 0 chr4 132684785 132684855 -69643492 - L2 LINE L2 0 3313 3242 200 209 23 0 chr4 132684986 132685029 -69643318 + L2 LINE L2 3265 3308 -5 1175 203 42 78 chr4 132686788 132687163 -69641184 - MLT1A2 LTR MaLR -2 465 9 193 264 240 16 chr4 132687554 132687679 -69640668 - MIR SINE MIR -46 216 64 265 324 102 42 chr4 132688080 132688296 -69640051 - MIR SINE MIR -2 260 32 799 251 98 92 chr4 132688316 132688807 -69639540 - MER21B LTR ERV1 -272 591 98 359 310 23 16 chr4 132688782 132688911 -69639436 - MER77 LTR ERV1 -410 195 66 * 2278 121 52 0 chr4 132688932 132689278 -69639069 - THE1B LTR MaLR 0 364 1 211 291 73 0 chr4 132689360 132689415 -69638932 + L2 LINE L2 3254 3312 -1 2600 176 54 29 chr4 132689622 132690173 -69638174 - MER34B LTR ERV1 0 565 1 1914 174 0 0 chr4 132690403 132690713 -69637634 + AluSg SINE Alu 1 310 0 246 95 0 0 chr4 132690721 132690763 -69637584 + (TTTTTA)n Simple_repeat Simple_repeat 3 44 0 1013 258 0 8 chr4 132691042 132691290 -69637057 + AluSg SINE Alu 64 309 -1 432 0 0 0 chr4 132691290 132691338 -69637009 + (TA)n Simple_repeat Simple_repeat 2 49 0 180 77 0 0 chr4 132694111 132694137 -69634210 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 189 311 104 49 chr4 132694340 132694523 -69633824 - L2 LINE L2 -183 3089 2897 3585 119 77 23 chr4 132694537 132695606 -69632741 - MER11A LTR ERVK 0 1236 1 21 0 0 0 chr4 132695739 132695760 -69632587 + AT_rich Low_complexity Low_complexity 1 21 0 475 276 55 93 chr4 132695777 132696175 -69632172 - HAL1 LINE L1 -6 2501 2119 433 218 147 60 chr4 132696212 132696478 -69631869 - HAL1 LINE L1 -357 2150 1862 398 333 28 51 chr4 132696510 132696765 -69631582 - L2 LINE L2 -32 3281 3033 677 175 29 88 chr4 132696828 132696999 -69631348 + MER110 LTR ERV1 1 161 -330 999 189 177 27 chr4 132697025 132697260 -69631087 - AluSx SINE Alu -13 299 20 2119 119 44 39 chr4 132697260 132697622 -69630725 - THE1B LTR MaLR 0 364 1 999 189 177 27 chr4 132697622 132697646 -69630701 - AluSx SINE Alu -292 20 1 454 268 24 8 chr4 132697646 132697769 -69630578 + MER110 LTR ERV1 182 306 -185 4216 143 20 11 chr4 132697799 132698503 -69629844 + MER50 LTR ERV1 1 710 -24 278 284 0 0 chr4 132698575 132698649 -69629698 + MER110 LTR ERV1 369 442 -49 1664 167 0 0 chr4 132699257 132699520 -69628827 - AluSx SINE Alu -38 274 12 1863 123 3 66 chr4 132700431 132700775 -69627572 + AluSx SINE Alu 1 325 0 1978 135 162 8 chr4 132701087 132701458 -69626889 + MSTA LTR MaLR 1 428 0 761 306 148 28 chr4 132701518 132702012 -69626335 + MLT1H1 LTR MaLR 3 555 0 2226 116 3 3 chr4 132702245 132702555 -69625792 - AluY SINE Alu -1 310 1 318 292 95 38 chr4 132702582 132703062 -69625285 - L1MC/D LINE L1 -591 5560 5255 4119 145 40 16 chr4 132703221 132703992 -69624355 - L1MA9 LINE L1 0 6312 5523 1879 207 10 5 chr4 132703995 132704401 -69623946 - L1MA9 LINE L1 -1776 4370 3963 864 205 33 102 chr4 132704382 132704902 -69623445 - L1M4 LINE L1 -3714 3851 3367 * 26 64 0 0 chr4 132705030 132705077 -69623270 + AT_rich Low_complexity Low_complexity 1 47 0 265 284 27 80 chr4 132705413 132705597 -69622750 - MLT1I LTR MaLR -256 153 56 23 0 0 0 chr4 132705699 132705722 -69622625 + AT_rich Low_complexity Low_complexity 1 23 0 33 25 0 0 chr4 132705741 132705781 -69622566 + AT_rich Low_complexity Low_complexity 1 40 0 452 188 0 0 chr4 132705998 132706083 -69622264 - MER6A DNA MER2_type 0 605 521 * 579 207 60 0 chr4 132706082 132706198 -69622149 - MER6A DNA MER2_type -481 124 2 36 23 0 0 chr4 132706860 132706903 -69621444 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 132709122 132709143 -69619204 + AT_rich Low_complexity Low_complexity 1 21 0 5871 159 64 9 chr4 132709170 132710334 -69618013 + Tigger3b DNA MER2_type 2 1229 -2 2428 91 0 0 chr4 132710408 132710706 -69617641 + AluSc SINE Alu 1 298 -11 595 269 25 0 chr4 132711313 132711551 -69616796 - L1MEc LINE L1 -2734 3481 3238 13910 212 13 18 chr4 132711567 132716241 -69612106 - L1PB1 LINE L1 -8 6859 2340 1536 228 86 17 chr4 132716248 132717648 -69610699 - L1PB1 LINE L1 -5216 1647 6 1792 286 77 14 chr4 132717683 132718811 -69609536 - L1MEc LINE L1 -3005 3210 1991 517 114 13 0 chr4 132718811 132718890 -69609457 + MADE1 DNA Mariner 1 80 0 1792 286 77 14 chr4 132718890 132719144 -69609203 - L1MEc LINE L1 -4224 1991 1754 5774 137 24 44 chr4 132719149 132720221 -69608126 - L1MA3 LINE L1 -1 6304 5266 2546 91 8 6 chr4 132720221 132720574 -69607773 - THE1A LTR MaLR -1 354 1 5774 137 24 44 chr4 132720574 132720978 -69607369 - L1MA3 LINE L1 -1039 5266 4855 664 186 41 7 chr4 132720972 132721117 -69607230 - L1MA3 LINE L1 -3806 2340 2191 * 5544 99 5 0 chr4 132721117 132721887 -69606460 - L1PA10 LINE L1 -16 6152 5379 316 78 0 109 chr4 132721912 132721976 -69606371 - L1PA10 LINE L1 -767 5394 5338 * 778 164 17 37 chr4 132721951 132722153 -69606194 - L1M4 LINE L1 -3905 3660 3463 727 147 33 44 chr4 132722501 132722731 -69605616 + LTR4 LTR ERV1 328 596 0 9209 133 47 18 chr4 132722731 132724389 -69603958 - L1M4 LINE L1 -4129 3436 1731 3073 180 62 3 chr4 132724364 132724946 -69603401 - L1M4 LINE L1 -6939 626 11 * 2006 266 78 36 chr4 132724932 132726359 -69601988 - L1MCc LINE L1 -4615 2507 819 * 2154 94 0 66 chr4 132726543 132726863 -69601484 - AluY SINE Alu -12 299 1 465 299 127 11 chr4 132726926 132727297 -69601050 - L1MCc LINE L1 -5986 437 24 23 0 0 0 chr4 132727320 132727343 -69601004 + AT_rich Low_complexity Low_complexity 1 23 0 216 200 0 0 chr4 132727530 132727570 -69600777 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 1113 325 47 5 chr4 132728752 132729158 -69599189 - LTR16A LTR ERVL -7 443 21 256 301 91 14 chr4 132729472 132729615 -69598732 - HERV16 LTR ERVL -323 4673 4520 325 380 61 13 chr4 132729690 132730003 -69598344 - ERVL LTR ERVL -783 4981 4654 305 349 28 39 chr4 132730081 132730365 -69597982 - ERVL LTR ERVL -956 4808 4528 253 365 149 0 chr4 132730961 132731109 -69597238 - LTR16A LTR ERVL -256 194 25 253 317 18 10 chr4 132731461 132731583 -69596764 - MIR SINE MIR -61 147 68 198 0 0 0 chr4 132732016 132732038 -69596309 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 2181 104 10 7 chr4 132732217 132732515 -69595832 - AluSg SINE Alu -11 299 1 1824 190 46 3 chr4 132732628 132732997 -69595350 - MLT1B LTR MaLR -4 386 2 231 263 120 38 chr4 132733812 132733945 -69594402 + MIR3 SINE MIR 63 206 -2 189 358 0 42 chr4 132735064 132735159 -69593188 + L2 LINE L2 2964 3054 -218 884 43 0 17 chr4 132736266 132736381 -69591966 + L1PA4 LINE L1 6040 6152 -3 186 43 0 0 chr4 132736427 132736450 -69591897 + (A)n Simple_repeat Simple_repeat 1 23 0 288 200 0 0 chr4 132736639 132736704 -69591643 + (TA)n Simple_repeat Simple_repeat 1 65 0 2481 68 0 10 chr4 132736770 132737081 -69591266 + AluY SINE Alu 1 308 -3 425 293 66 28 chr4 132737784 132737965 -69590382 - MIR SINE MIR -50 212 25 2049 150 0 0 chr4 132738731 132739025 -69589322 + AluSx SINE Alu 1 294 -18 28 29 0 0 chr4 132739198 132739233 -69589114 + AT_rich Low_complexity Low_complexity 1 35 0 2231 120 0 0 chr4 132739293 132739593 -69588754 - AluSg1 SINE Alu -7 302 3 189 0 0 0 chr4 132739889 132739910 -69588437 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 784 259 132 43 chr4 132740275 132740600 -69587747 + LTR16A LTR ERVL 97 450 0 1803 167 26 24 chr4 132743530 132743871 -69584476 - MLT1A1 LTR MaLR 0 365 24 295 307 89 0 chr4 132743909 132744010 -69584337 + MER81 DNA DNA 5 114 0 940 196 4 61 chr4 132744329 132744558 -69583789 + MER20 DNA MER1_type 4 219 0 419 344 52 32 chr4 132745015 132745323 -69583024 - MLT1I LTR MaLR 0 409 96 544 273 145 35 chr4 132745669 132746013 -69582334 + MLT1I LTR MaLR 28 409 0 2012 229 86 8 chr4 132746026 132746621 -69581726 + LTR48B LTR ERV1 1 641 -3 667 148 113 0 chr4 132746683 132746798 -69581549 - FLAM_A SINE Alu -5 128 1 27 0 0 0 chr4 132748299 132748326 -69580021 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr4 132749088 132749116 -69579231 + AT_rich Low_complexity Low_complexity 1 28 0 459 265 114 47 chr4 132749552 132749763 -69578584 - MIR SINE MIR -12 250 26 596 204 0 0 chr4 132750047 132750145 -69578202 - Tigger7 DNA MER2_type -8 2579 2482 1118 244 4 4 chr4 132750147 132750381 -69577966 - Tigger7 DNA MER2_type -499 234 1 25 51 0 0 chr4 132750422 132750461 -69577886 + AT_rich Low_complexity Low_complexity 1 39 0 607 299 158 31 chr4 132751875 132752190 -69576157 - LTR33 LTR ERVL -8 513 121 2083 134 71 3 chr4 132752190 132752555 -69575792 + MLT1B LTR MaLR 1 390 0 607 299 158 31 chr4 132752555 132752694 -69575653 - LTR33 LTR ERVL -400 121 1 2906 147 62 56 chr4 132752968 132753191 -69575156 - L1MA6 LINE L1 0 6300 6080 1248 56 11 11 chr4 132753191 132753370 -69574977 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2216 98 24 0 chr4 132753370 132753666 -69574681 - AluSx SINE Alu -9 303 1 2906 147 62 56 chr4 132753666 132753960 -69574387 - L1MA6 LINE L1 -220 6080 5774 1571 191 11 3 chr4 132753960 132754266 -69574081 - AluJb SINE Alu 0 308 1 2906 147 62 56 chr4 132754266 132754385 -69573962 - L1MA6 LINE L1 -526 5774 5657 2074 138 0 0 chr4 132754412 132754716 -69573631 + AluSx SINE Alu 1 304 -8 24 0 0 0 chr4 132756892 132756916 -69571431 + AT_rich Low_complexity Low_complexity 1 24 0 2115 221 118 20 chr4 132757431 132758091 -69570256 - MER50 LTR ERV1 0 734 10 733 222 78 0 chr4 132758153 132758333 -69570014 - L1ME3 LINE L1 -1 6161 5968 931 144 35 40 chr4 132758334 132758536 -69569811 - LTR7 LTR ERV1 0 450 250 2254 168 68 7 chr4 132758536 132758669 -69569678 - HERVH LTR ERV1 -6445 1268 1145 1636 58 0 10 chr4 132758669 132758875 -69569472 + AluY SINE Alu 99 302 -9 2254 168 68 7 chr4 132758875 132759182 -69569165 - HERVH LTR ERV1 -6568 1145 801 978 217 25 10 chr4 132759282 132759685 -69568662 - HERVH LTR ERV1 -7267 446 1 293 100 0 0 chr4 132759685 132759725 -69568622 - LTR7 LTR ERV1 0 450 411 777 131 7 15 chr4 132759799 132759936 -69568411 - LTR7 LTR ERV1 -314 136 1 2134 109 3 13 chr4 132760009 132760313 -69568034 - AluSg1 SINE Alu -8 301 1 604 115 19 13 chr4 132761535 132761691 -69566656 + (TA)n Simple_repeat Simple_repeat 2 158 0 1870 161 0 7 chr4 132762087 132762391 -69565956 + AluJb SINE Alu 3 304 -8 204 279 0 0 chr4 132762416 132762477 -69565870 + (TTCA)n Simple_repeat Simple_repeat 1 61 0 23 33 0 0 chr4 132762538 132762568 -69565779 + AT_rich Low_complexity Low_complexity 1 30 0 31 0 0 0 chr4 132763150 132763181 -69565166 + AT_rich Low_complexity Low_complexity 1 31 0 513 262 36 40 chr4 132764210 132764435 -69563912 - LTR37B LTR ERV1 -46 422 199 2399 103 0 0 chr4 132764528 132764839 -69563508 - AluSx SINE Alu 0 312 2 26 30 0 0 chr4 132764873 132764906 -69563441 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4 132765355 132765383 -69562964 + AT_rich Low_complexity Low_complexity 1 28 0 390 327 86 22 chr4 132765426 132765879 -69562468 - L1ME LINE L1 -415 5747 5266 269 253 24 12 chr4 132765968 132766051 -69562296 - L1MC4 LINE L1 -1 8041 7958 250 318 53 40 chr4 132767223 132767374 -69560973 + L3 LINE CR1 1395 1547 -30 245 119 68 51 chr4 132769259 132769318 -69559029 - MLT2B1 LTR ERVL 0 520 461 237 152 0 43 chr4 132769466 132769512 -69558835 + MLT2D LTR ERVL 1 44 -370 1690 199 117 50 chr4 132769522 132769965 -69558382 - MLT2B1 LTR ERVL -47 473 1 474 339 20 43 chr4 132770224 132770478 -69557869 + MIR SINE MIR 4 251 -11 260 328 104 15 chr4 132770562 132770696 -69557651 + MER5B DNA MER1_type 18 163 -15 25 95 0 0 chr4 132771407 132771481 -69556866 + AT_rich Low_complexity Low_complexity 1 74 0 2580 89 24 8 chr4 132771853 132772222 -69556125 + THE1C LTR MaLR 1 375 0 322 245 29 49 chr4 132772224 132772326 -69556021 + L2 LINE L2 3214 3313 0 21 0 0 0 chr4 132772541 132772562 -69555785 + AT_rich Low_complexity Low_complexity 1 21 0 214 316 101 25 chr4 132772605 132772763 -69555584 - MIR SINE MIR -50 212 43 22 35 0 0 chr4 132775088 132775117 -69553230 + AT_rich Low_complexity Low_complexity 1 29 0 285 29 0 0 chr4 132775361 132775395 -69552952 + (T)n Simple_repeat Simple_repeat 1 34 0 1487 175 66 7 chr4 132775550 132775836 -69552511 - AluSx SINE Alu -8 304 2 22 0 0 0 chr4 132776229 132776251 -69552096 + AT_rich Low_complexity Low_complexity 1 22 0 3104 202 114 94 chr4 132776371 132776785 -69551562 + L1MDa LINE L1 16 420 -6120 2259 146 64 5 chr4 132776785 132777189 -69551158 + MSTA LTR MaLR 1 428 0 3104 202 114 94 chr4 132777189 132777902 -69550445 + L1MDa LINE L1 420 1166 -5374 3428 202 62 30 chr4 132777908 132778779 -69549568 + L1MD1 LINE L1 5341 6239 -3 14031 45 16 0 chr4 132778953 132781480 -69546867 + L1PA5 LINE L1 3608 6154 0 23 54 0 0 chr4 132783012 132783049 -69545298 + AT_rich Low_complexity Low_complexity 1 37 0 565 284 93 22 chr4 132783995 132784220 -69544127 - MIR SINE MIR -16 246 6 364 263 85 17 chr4 132789049 132789167 -69539180 - MIR SINE MIR -79 183 58 258 95 0 0 chr4 132789173 132789215 -69539132 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 350 330 0 0 chr4 132789217 132789317 -69539030 - L2 LINE L2 -28 3285 3186 397 208 0 25 chr4 132789590 132789710 -69538637 + (TATATG)n Simple_repeat Simple_repeat 3 119 0 4503 183 34 45 chr4 132789859 132789993 -69538354 - L1MA9 LINE L1 0 6200 6066 261 0 0 0 chr4 132789993 132790022 -69538325 + (TG)n Simple_repeat Simple_repeat 2 30 0 4503 183 34 45 chr4 132790022 132790262 -69538085 - L1MA9 LINE L1 -134 6066 5825 2551 139 26 0 chr4 132790262 132790685 -69537662 + MER57B LTR ERV1 1 434 0 4503 183 34 45 chr4 132790685 132791151 -69537196 - L1MA9 LINE L1 -375 5825 5355 3066 171 23 4 chr4 132791151 132791666 -69536681 - MER1A DNA MER1_type 0 527 3 4503 183 34 45 chr4 132791666 132792341 -69536006 - L1MA9 LINE L1 -845 5355 4694 2035 220 52 2 chr4 132792332 132792873 -69535474 - L1MA9 LINE L1 -2526 3508 2941 * 934 197 58 58 chr4 132792891 132793114 -69535233 - AluJo SINE Alu -4 308 86 1099 229 26 0 chr4 132793161 132793427 -69534920 - L1MA9 LINE L1 -3153 2881 2609 2257 279 86 34 chr4 132793436 132794679 -69533668 - L1MA9 LINE L1 -3580 2454 1277 2401 70 3 10 chr4 132794679 132794979 -69533368 - AluY SINE Alu -13 298 1 2257 279 86 34 chr4 132794979 132796734 -69531613 - L1MA9 LINE L1 -4757 1277 1 571 275 144 0 chr4 132797769 132797998 -69530349 - L1ME LINE L1 -3405 2675 2414 396 40 0 0 chr4 132798094 132798144 -69530203 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 701 143 248 0 chr4 132798144 132798277 -69530070 - FRAM SINE Alu 0 166 1 2224 120 0 0 chr4 132798313 132798622 -69529725 - AluSc SINE Alu 0 309 1 406 285 50 0 chr4 132798625 132798825 -69529522 - L1ME LINE L1 -3727 2353 2144 * 1727 249 79 51 chr4 132798816 132799782 -69528565 - L1ME LINE L1 -4322 1939 874 24 0 0 0 chr4 132799785 132799809 -69528538 + AT_rich Low_complexity Low_complexity 1 24 0 337 248 92 34 chr4 132799818 132800024 -69528323 - L1ME LINE L1 -5327 743 526 282 336 46 34 chr4 132800391 132800629 -69527718 - L1ME LINE L1 -5762 308 68 223 265 103 0 chr4 132801541 132801658 -69526689 + MIR SINE MIR 79 207 -55 317 266 89 77 chr4 132801920 132802168 -69526179 + MIR SINE MIR 12 262 0 1937 159 0 13 chr4 132802228 132802536 -69525811 + AluJb SINE Alu 1 304 -8 304 337 116 16 chr4 132802577 132802767 -69525580 - MIR SINE MIR -41 221 13 21 0 0 0 chr4 132802952 132802973 -69525374 + AT_rich Low_complexity Low_complexity 1 21 0 255 31 0 0 chr4 132803571 132803603 -69524744 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1716 153 30 43 chr4 132805167 132805390 -69522957 - AluJb SINE Alu -16 296 76 2207 107 0 0 chr4 132805390 132805689 -69522658 + AluSg SINE Alu 1 299 -11 1716 153 30 43 chr4 132805689 132805765 -69522582 - AluJb SINE Alu -236 76 1 311 255 128 48 chr4 132805774 132805923 -69522424 + MLT1J LTR MaLR 241 487 -128 1822 266 27 19 chr4 132806127 132806710 -69521637 + Zaphod DNA AcHobo 192 779 -3252 * 2029 266 53 17 chr4 132806704 132807455 -69520892 + Zaphod DNA AcHobo 2410 3187 -844 515 241 84 28 chr4 132807480 132807729 -69520618 + Zaphod DNA AcHobo 3344 3606 -425 298 292 22 11 chr4 132807833 132807922 -69520425 + Charlie2 DNA MER1_type 233 322 -2460 276 216 397 0 chr4 132808012 132808128 -69520219 + MER5A DNA MER1_type 28 189 0 279 232 80 16 chr4 132808228 132808353 -69519994 + Charlie2 DNA MER1_type 2729 2861 -1 291 290 56 19 chr4 132808544 132808651 -69519696 - MER5A DNA MER1_type -43 146 36 790 259 104 36 chr4 132808823 132809159 -69519188 - L2 LINE L2 -826 2488 2130 186 133 0 0 chr4 132809441 132809471 -69518876 + (CA)n Simple_repeat Simple_repeat 1 30 0 536 267 63 10 chr4 132809502 132809708 -69518639 - L2 LINE L2 -3 3310 3094 551 253 78 31 chr4 132809720 132810055 -69518292 + L1MC5 LINE L1 6907 7254 -733 380 257 61 7 chr4 132810142 132810290 -69518057 + L1MC5 LINE L1 7260 7415 -546 1167 241 136 63 chr4 132810798 132811311 -69517036 + MLT1F1 LTR MaLR 12 559 -8 635 263 35 2 chr4 132812053 132812226 -69516121 - MIR SINE MIR -24 238 64 2184 124 44 39 chr4 132812628 132812990 -69515357 - THE1B LTR MaLR 0 364 1 22 35 0 0 chr4 132814703 132814732 -69513615 + AT_rich Low_complexity Low_complexity 1 29 0 196 359 137 22 chr4 132814880 132815463 -69512884 - L2 LINE L2 -634 2680 2031 258 290 61 70 chr4 132816476 132816658 -69511689 + MIR SINE MIR 19 207 -55 222 174 0 0 chr4 132817414 132817460 -69510887 + (CA)n Simple_repeat Simple_repeat 2 47 0 223 260 90 10 chr4 132818348 132818448 -69509899 - L2 LINE L2 -9 3304 3197 2614 58 0 0 chr4 132819157 132819468 -69508879 + AluY SINE Alu 1 311 0 249 238 59 40 chr4 132819480 132819581 -69508766 - MLT1F LTR MaLR -439 103 1 22 0 0 0 chr4 132819836 132819858 -69508489 + AT_rich Low_complexity Low_complexity 1 22 0 266 289 26 0 chr4 132820140 132820216 -69508131 - MLT1F LTR MaLR -463 79 2 198 0 0 0 chr4 132820227 132820249 -69508098 + (A)n Simple_repeat Simple_repeat 1 22 0 229 220 0 0 chr4 132820978 132821028 -69507319 + L1PA16 LINE L1 6105 6154 -12 341 355 170 31 chr4 132824234 132825212 -69503135 + L2 LINE L2 1527 2640 -674 271 289 194 55 chr4 132827224 132827425 -69500922 - MIR SINE MIR -14 248 20 1548 140 71 41 chr4 132827890 132828232 -69500115 + THE1C LTR MaLR 1 355 0 9419 141 11 31 chr4 132828234 132829833 -69498514 + THE1C-int LTR MaLR 3 1569 -11 1713 170 73 25 chr4 132829837 132830195 -69498152 + THE1C LTR MaLR 1 375 0 516 347 78 5 chr4 132830317 132830703 -69497644 + L2 LINE L2 1660 2073 -1241 231 61 0 0 chr4 132830820 132830853 -69497494 + (TA)n Simple_repeat Simple_repeat 2 34 0 213 182 0 0 chr4 132830920 132830975 -69497372 + (TA)n Simple_repeat Simple_repeat 1 55 0 1637 176 91 0 chr4 132831099 132831417 -69496930 + MER7A DNA MER2_type 2 346 0 429 36 0 0 chr4 132832087 132832142 -69496205 + (CA)n Simple_repeat Simple_repeat 2 56 0 2373 84 24 43 chr4 132832362 132832733 -69495614 - THE1B LTR MaLR 0 364 1 267 31 0 0 chr4 132834115 132834147 -69494200 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1596 139 4 0 chr4 132834175 132834413 -69493934 - AluSp SINE Alu -74 239 1 28 48 0 0 chr4 132835133 132835175 -69493172 + AT_rich Low_complexity Low_complexity 1 42 0 1920 136 11 0 chr4 132835356 132835668 -69492679 - AluSx SINE Alu 0 315 1 430 287 13 45 chr4 132836544 132836701 -69491646 + MIR SINE MIR 101 252 -10 932 200 45 0 chr4 132837705 132837905 -69490442 + MER3 DNA MER1_type 1 209 0 1213 146 189 5 chr4 132838155 132838367 -69489980 - AluSx SINE Alu -25 287 37 8740 51 1 3 chr4 132838545 132840404 -69487943 + L1PA5 LINE L1 4284 6140 -14 216 0 0 0 chr4 132840559 132840583 -69487764 + (A)n Simple_repeat Simple_repeat 1 24 0 1248 181 120 32 chr4 132840655 132840997 -69487350 - MLT1A2 LTR MaLR 0 374 3 984 264 118 43 chr4 132841175 132841591 -69486756 + MLT1H LTR MaLR 71 517 -32 597 307 129 14 chr4 132841916 132842530 -69485817 + L1MEd LINE L1 1306 2032 -4689 321 338 15 23 chr4 132842704 132842837 -69485510 + L2 LINE L2 3181 3312 -1 254 246 0 0 chr4 132843110 132843179 -69485168 + L1MEd LINE L1 2513 2581 -3959 1244 174 42 8 chr4 132843325 132843561 -69484786 + AluJb SINE Alu 1 244 -68 2880 3 0 0 chr4 132844036 132844347 -69484000 - AluYa5 SINE Alu 0 311 1 1284 163 220 0 chr4 132844456 132844751 -69483596 - MER46B DNA MER2_type 0 236 2 287 157 20 0 chr4 132844707 132844758 -69483589 + MER46A DNA MER2_type 100 151 -85 308 263 30 38 chr4 132845850 132845983 -69482364 - Charlie8 DNA MER1_type -1938 479 348 23 0 0 0 chr4 132845990 132846013 -69482334 + AT_rich Low_complexity Low_complexity 1 23 0 327 299 56 33 chr4 132846044 132846258 -69482089 + HAL1 LINE L1 1230 1448 -1059 789 320 54 26 chr4 132846387 132847006 -69481341 + L2 LINE L2 2645 3278 -35 2877 155 50 8 chr4 132847008 132847512 -69480835 + Tigger7 DNA MER2_type 1 525 -208 515 168 9 75 chr4 132847489 132847596 -69480751 + Tigger7 DNA MER2_type 2387 2486 -1 * 283 299 269 6 chr4 132847657 132847824 -69480523 - MLT1I LTR MaLR -140 269 59 244 234 13 13 chr4 132848241 132848318 -69480029 + HAL1 LINE L1 2074 2150 -357 320 242 57 108 chr4 132848402 132848559 -69479788 + HAL1b LINE L1 752 900 -448 37 52 0 0 chr4 132848625 132848683 -69479664 + AT_rich Low_complexity Low_complexity 1 58 0 383 287 85 58 chr4 132848689 132848912 -69479435 + HAL1 LINE L1 2220 2448 -59 235 281 6 91 chr4 132850277 132850427 -69477920 - MER5B DNA MER1_type -1 188 1 268 224 0 30 chr4 132850933 132851000 -69477347 + A-rich Low_complexity Low_complexity 5 69 0 1155 122 0 0 chr4 132851093 132851257 -69477090 - AluSp SINE Alu -17 296 133 635 210 156 0 chr4 132851630 132851816 -69476531 - MER5C DNA MER1_type -50 274 60 4078 160 18 11 chr4 132852051 132852756 -69475591 - MER50 LTR ERV1 -23 711 2 350 270 147 0 chr4 132855835 132855966 -69472381 - MIR SINE MIR -2 260 82 552 317 10 34 chr4 132856118 132856326 -69472021 + MIR SINE MIR 47 249 -13 22 35 0 0 chr4 132858454 132858483 -69469864 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 132858503 132858524 -69469823 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 132860366 132860387 -69467960 + AT_rich Low_complexity Low_complexity 1 21 0 221 276 23 0 chr4 132860756 132860843 -69467504 + (TA)n Simple_repeat Simple_repeat 2 90 0 1999 119 21 0 chr4 132862567 132862853 -69465494 - AluSg SINE Alu -18 292 1 3382 201 52 21 chr4 132862977 132863754 -69464593 + LTR1B LTR ERV1 26 826 0 187 346 10 20 chr4 132864214 132864315 -69464032 + MIR SINE MIR 44 143 -119 2042 105 43 0 chr4 132864479 132864755 -69463592 - AluSx SINE Alu -7 305 18 286 307 0 0 chr4 132864793 132864868 -69463479 - Zaphod DNA AcHobo 0 4031 3957 578 104 0 83 chr4 132865215 132865311 -69463036 - THE1A LTR MaLR 0 355 268 2631 164 34 4 chr4 132865313 132866155 -69462192 + L1P4 LINE L1 4821 5683 -483 480 344 14 18 chr4 132867182 132867403 -69460944 - LTR33 LTR ERVL -297 224 5 2088 95 6 38 chr4 132869170 132869485 -69458862 - AluSx SINE Alu -7 305 1 23 54 0 0 chr4 132869963 132870000 -69458347 + AT_rich Low_complexity Low_complexity 1 37 0 1404 186 4 21 chr4 132871189 132871426 -69456921 - Tigger5 DNA MER2_type -2088 235 3 21 0 0 0 chr4 132871527 132871548 -69456799 + AT_rich Low_complexity Low_complexity 1 21 0 2009 160 110 9 chr4 132871878 132872297 -69456050 - LOR1b LTR ERV1 0 461 1 267 386 71 0 chr4 132872557 132872684 -69455663 + L2 LINE L2 3137 3272 0 36 100 0 0 chr4 132872811 132872931 -69455416 + AT_rich Low_complexity Low_complexity 1 120 0 321 342 39 85 chr4 132874438 132874827 -69453520 - L2 LINE L2 0 3313 2943 1217 332 122 8 chr4 132875226 132875826 -69452521 - L2 LINE L2 -453 2861 2194 1478 321 91 21 chr4 132875826 132876717 -69451630 - L2 LINE L2 -2311 1003 51 1709 296 47 34 chr4 132877101 132877720 -69450627 + MLT2F LTR ERVL 11 637 -26 543 282 63 0 chr4 132877731 132877905 -69450442 + MIR SINE MIR 78 262 0 1414 146 135 0 chr4 132878349 132878609 -69449738 + AluJb SINE Alu 2 296 -6 1742 130 21 101 chr4 132879482 132879860 -69448487 + MER7A DNA MER2_type 1 346 0 393 259 122 8 chr4 132880715 132880846 -69447501 - MIR3 SINE MIR -48 160 15 1523 182 27 10 chr4 132882104 132882271 -69446076 - AluJo SINE Alu -11 301 138 2667 0 0 17 chr4 132882271 132882570 -69445777 - AluYa5 SINE Alu -13 298 5 1523 182 27 10 chr4 132882570 132882582 -69445765 - AluJo SINE Alu -174 138 128 222 37 0 0 chr4 132882582 132882609 -69445738 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1523 182 27 10 chr4 132882609 132882724 -69445623 - AluJo SINE Alu -184 128 1 2039 109 44 0 chr4 132884025 132884319 -69444028 + AluY SINE Alu 1 307 -4 256 281 83 24 chr4 132884520 132884728 -69443619 - L1ME LINE L1 -4685 1642 1149 241 133 24 48 chr4 132885651 132885734 -69442613 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 2253 96 0 3 chr4 132885961 132886262 -69442085 - AluSq SINE Alu -13 300 1 24 53 0 0 chr4 132887118 132887156 -69441191 + AT_rich Low_complexity Low_complexity 1 38 0 216 97 0 0 chr4 132887482 132887513 -69440834 + (TTC)n Simple_repeat Simple_repeat 2 32 0 1909 134 24 3 chr4 132889440 132889730 -69438617 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr4 132890029 132890050 -69438297 + AT_rich Low_complexity Low_complexity 1 21 0 3084 181 70 25 chr4 132890212 132890907 -69437440 + LTR8A LTR ERV1 1 727 0 22 0 0 0 chr4 132891028 132891050 -69437297 + AT_rich Low_complexity Low_complexity 1 22 0 192 217 0 0 chr4 132892183 132892229 -69436118 + A-rich Low_complexity Low_complexity 1 46 0 246 307 50 50 chr4 132893642 132893782 -69434565 + L2 LINE L2 3132 3271 -1 248 323 65 24 chr4 132894487 132894611 -69433736 - L2 LINE L2 0 3313 3185 299 307 57 21 chr4 132894975 132895115 -69433232 - MIR SINE MIR 0 262 118 883 279 75 4 chr4 132895217 132895482 -69432865 + Charlie2 DNA MER1_type 39 322 -2460 276 224 397 0 chr4 132895571 132895687 -69432660 + MER5A DNA MER1_type 28 189 0 644 308 102 55 chr4 132896342 132896781 -69431566 - L2 LINE L2 -18 3295 2836 438 20 0 0 chr4 132897451 132897502 -69430845 + (TG)n Simple_repeat Simple_repeat 2 52 0 8663 115 20 6 chr4 132897512 132898779 -69429568 - HSMAR1 DNA Mariner -2 1285 1 643 331 115 18 chr4 132900761 132901378 -69426969 - L1ME3A LINE L1 -231 5939 5263 1621 185 154 34 chr4 132901956 132902366 -69425981 - LOR1b LTR ERV1 -2 459 1 2195 155 2 57 chr4 132902756 132903175 -69425172 - MER57A LTR ERV1 0 403 8 215 273 65 13 chr4 132903311 132903388 -69424959 - L2 LINE L2 -8 3305 3225 2492 171 58 19 chr4 132903894 132904409 -69423938 + MER34C LTR ERV1 37 571 -14 3219 163 49 13 chr4 132904550 132905162 -69423185 - MER39B LTR ERV1 -19 634 1 21 0 0 0 chr4 132905610 132905631 -69422716 + AT_rich Low_complexity Low_complexity 1 21 0 2708 169 53 2 chr4 132905695 132906169 -69422178 - MER41E LTR ERV1 0 512 15 30 77 0 0 chr4 132906296 132906361 -69421986 + AT_rich Low_complexity Low_complexity 1 65 0 24 77 0 0 chr4 132906487 132906539 -69421808 + AT_rich Low_complexity Low_complexity 1 52 0 220 286 24 8 chr4 132906550 132906676 -69421671 + (TA)n Simple_repeat Simple_repeat 2 129 0 1563 251 64 12 chr4 132907641 132908064 -69420283 + LTR40c LTR ERVL 6 450 -15 2619 163 76 38 chr4 132908411 132909017 -69419330 - LTR27 LTR ERV1 -4 632 4 1347 294 35 46 chr4 132909018 132909585 -69418762 + HERVL40 LTR ERVL 992 1552 -3978 1995 165 30 28 chr4 132909585 132910090 -69418257 + MLT2A2 LTR ERVL 1 406 -47 347 153 0 12 chr4 132910093 132910178 -69418169 + (TA)n Simple_repeat Simple_repeat 2 85 0 251 101 0 79 chr4 132910181 132910193 -69418154 + MLT2A2 LTR ERVL 388 399 -54 387 0 0 0 chr4 132910193 132910236 -69418111 + (TG)n Simple_repeat Simple_repeat 2 44 0 251 101 0 79 chr4 132910236 132910279 -69418068 + MLT2A2 LTR ERVL 399 445 -8 892 276 15 15 chr4 132910472 132910733 -69417614 + HERVL40 LTR ERVL 1808 2068 -1488 4415 233 43 48 chr4 132910855 132911173 -69417174 + HERVL40 LTR ERVL 2093 2411 -1145 2230 129 22 19 chr4 132911173 132911536 -69416811 - THE1B LTR MaLR 0 364 1 4415 233 43 48 chr4 132911536 132912454 -69415893 + HERVL40 LTR ERVL 2411 3552 -4 1357 249 65 11 chr4 132912458 132912828 -69415519 + LTR52 LTR ERVL 13 402 -19 2798 261 55 30 chr4 132912843 132914657 -69413690 + HERVL40 LTR ERVL 3547 5530 0 997 206 42 158 chr4 132914658 132914935 -69413412 + LTR40c LTR ERVL 2 191 -274 530 127 0 0 chr4 132914935 132915014 -69413333 + MADE1 DNA Mariner 2 80 0 997 206 42 158 chr4 132915014 132915261 -69413086 + LTR40c LTR ERVL 191 465 0 4578 58 17 52 chr4 132915945 132917011 -69411336 + MER11A LTR ERVK 1 1266 0 808 210 6 12 chr4 132917765 132917932 -69410415 + FRAM SINE Alu 1 166 0 740 265 189 12 chr4 132917974 132918527 -69409820 - LTR50 LTR ERVL -1 794 53 342 282 20 27 chr4 132918804 132918953 -69409394 + L1MC4 LINE L1 6555 6702 -1340 1433 177 78 39 chr4 132918960 132919321 -69409026 - THE1C LTR MaLR 0 375 1 364 247 35 11 chr4 132919321 132919495 -69408852 + (TA)n Simple_repeat Simple_repeat 1 178 0 1617 203 32 25 chr4 132919516 132919924 -69408423 + L1MD3 LINE L1 6702 7112 -883 256 305 24 0 chr4 132919928 132920010 -69408337 + MLT1F1 LTR MaLR 36 119 -448 725 249 56 5 chr4 132920029 132920242 -69408105 + L1MD3 LINE L1 7416 7639 -356 678 316 22 18 chr4 132920408 132920680 -69407667 + LTR16B LTR ERVL 192 464 0 * 1483 244 129 4 chr4 132920680 132921159 -69407188 - LTR50 LTR ERVL -210 585 47 1679 135 0 34 chr4 132921259 132921526 -69406821 - AluSx SINE Alu -54 258 1 224 247 96 0 chr4 132923060 132923133 -69405214 + MIR SINE MIR 124 203 -59 4000 79 2 32 chr4 132923280 132923850 -69404497 + MER41A LTR ERV1 1 553 -1 324 64 0 21 chr4 132924989 132925036 -69403311 - MLT2B1 LTR ERVL -2 518 473 10407 136 24 9 chr4 132925037 132926751 -69401596 + Tigger1 DNA MER2_type 1 1739 -679 1551 184 7 30 chr4 132926831 132927136 -69401211 + AluJo SINE Alu 2 299 -13 2013 121 29 13 chr4 132928853 132929160 -69399187 - AluSx SINE Alu 0 312 1 1944 116 31 10 chr4 132929761 132930054 -69398293 - AluY SINE Alu -12 299 1 826 254 124 12 chr4 132930116 132930443 -69397904 - L1ME3A LINE L1 -5 6165 5797 1759 207 89 3 chr4 132930443 132930835 -69397512 + MSTA LTR MaLR 1 426 -2 1012 194 93 28 chr4 132930845 132931092 -69397255 + MER6A DNA MER2_type 1 263 -342 4908 153 11 33 chr4 132931097 132932135 -69396212 + L1 LINE L1 4408 5424 -743 * 6096 104 19 5 chr4 132932133 132933052 -69395295 + L1MA2 LINE L1 5374 6304 0 25 0 0 0 chr4 132933057 132933082 -69395265 + AT_rich Low_complexity Low_complexity 1 25 0 1240 276 102 9 chr4 132933329 132933781 -69394566 - L1ME2 LINE L1 -183 5981 5488 24 0 0 0 chr4 132933790 132933814 -69394533 + AT_rich Low_complexity Low_complexity 1 24 0 1193 258 43 13 chr4 132933999 132934394 -69393953 - L1ME2 LINE L1 -1250 4896 4490 1624 92 9 0 chr4 132934476 132934704 -69393643 - L1PA7 LINE L1 -13 6141 5912 405 0 0 0 chr4 132935104 132935149 -69393198 + (CA)n Simple_repeat Simple_repeat 2 46 0 28 86 0 0 chr4 132936298 132936368 -69391979 + AT_rich Low_complexity Low_complexity 1 70 0 308 299 167 7 chr4 132936644 132936788 -69391559 + MIR SINE MIR 92 258 -4 346 311 114 36 chr4 132937329 132937862 -69390485 + L1M4 LINE L1 3715 4289 -1857 1989 139 0 0 chr4 132937868 132938162 -69390185 + AluSx SINE Alu 1 294 -18 7348 131 50 6 chr4 132938387 132939598 -69388749 - Tigger1 DNA MER2_type -1153 1265 1 533 301 20 25 chr4 132939651 132939854 -69388493 + L2 LINE L2 3112 3313 0 247 268 124 10 chr4 132940161 132940258 -69388089 + MLT1K LTR MaLR 424 531 -57 24 0 0 0 chr4 132941862 132941886 -69386461 + AT_rich Low_complexity Low_complexity 1 24 0 197 276 20 82 chr4 132942431 132942529 -69385818 + L2 LINE L2 3222 3313 0 487 355 24 12 chr4 132942917 132943086 -69385261 + MIR3 SINE MIR 30 200 -8 278 236 14 0 chr4 132943772 132943844 -69384503 + (TA)n Simple_repeat Simple_repeat 2 74 0 286 239 11 23 chr4 132944087 132944175 -69384172 - MER94 DNA DNA -47 87 1 266 325 108 33 chr4 132946320 132946440 -69381907 + L2 LINE L2 3185 3313 0 271 173 25 0 chr4 132946782 132946863 -69381484 + (TA)n Simple_repeat Simple_repeat 1 83 0 394 160 40 0 chr4 132947656 132947756 -69380591 + (CATA)n Simple_repeat Simple_repeat 1 104 0 254 268 27 66 chr4 132948071 132948104 -69380243 - L1MC/D LINE L1 -1915 5870 5838 493 288 79 18 chr4 132948104 132948255 -69380092 - L1ME3A LINE L1 -322 5848 5677 423 0 0 0 chr4 132948255 132948302 -69380045 + (TG)n Simple_repeat Simple_repeat 2 48 0 493 288 79 18 chr4 132948302 132948379 -69379968 - L1ME3A LINE L1 -493 5677 5606 482 300 24 16 chr4 132948447 132948694 -69379653 - L1ME3A LINE L1 -555 5615 5367 187 202 44 0 chr4 132948702 132948816 -69379531 + (TA)n Simple_repeat Simple_repeat 1 119 0 3231 155 15 27 chr4 132948901 132949500 -69378847 - L1MC1 LINE L1 -30 6303 5712 745 212 96 5 chr4 132949811 132950009 -69378338 + L1MDa LINE L1 1844 2059 -4481 * 955 173 6 37 chr4 132949990 132950201 -69378146 + L1ME LINE L1 5463 5637 -529 24 0 0 0 chr4 132950201 132950225 -69378122 + AT_rich Low_complexity Low_complexity 1 24 0 309 133 0 36 chr4 132950449 132950532 -69377815 + (TA)n Simple_repeat Simple_repeat 1 80 0 354 248 79 25 chr4 132950651 132950853 -69377494 + HAL1b LINE L1 217 429 -919 226 228 69 20 chr4 132951081 132951182 -69377165 + L1MC4 LINE L1 6598 6703 -1339 271 223 36 9 chr4 132951191 132951303 -69377044 + (TA)n Simple_repeat Simple_repeat 1 115 0 297 135 67 0 chr4 132951316 132951405 -69376942 + (TA)n Simple_repeat Simple_repeat 1 95 0 486 221 39 10 chr4 132951420 132951524 -69376823 - FLAM_C SINE Alu -36 107 1 747 317 41 55 chr4 132951524 132952085 -69376262 - MLT1L LTR MaLR -62 553 1 1227 247 68 5 chr4 132953284 132953652 -69374695 - L1ME2 LINE L1 -9 6155 5765 2821 198 53 15 chr4 132953684 132954270 -69374077 - LTR31 LTR ERV1 0 619 12 761 260 88 32 chr4 132954302 132954552 -69373795 - L1ME2 LINE L1 -429 5735 5472 2103 186 29 2 chr4 132955046 132955465 -69372882 - Tigger2a DNA MER2_type -4 430 1 354 253 134 81 chr4 132955556 132955928 -69372419 + L1MEd LINE L1 813 1204 -4915 2186 111 0 3 chr4 132955953 132956251 -69372096 + AluSx SINE Alu 1 297 -15 300 330 136 5 chr4 132956294 132956485 -69371862 + HAL1 LINE L1 1400 1615 -892 1135 298 138 21 chr4 132956747 132957270 -69371077 - MLT1E LTR MaLR -4 589 6 505 252 52 135 chr4 132957273 132957674 -69370673 - MLT1E-int LTR MaLR 0 1371 1004 315 0 0 0 chr4 132957732 132957767 -69370580 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 254 330 58 35 chr4 132957831 132958004 -69370343 - MLT1E-int LTR MaLR -503 868 692 1479 274 42 42 chr4 132958246 132958840 -69369507 - MLT1E LTR MaLR -3 578 1 335 294 176 7 chr4 132959213 132959349 -69368998 - MIR SINE MIR -98 164 6 1251 142 26 26 chr4 132959396 132959622 -69368725 + AluJo SINE Alu 87 312 0 2025 122 4 0 chr4 132959992 132960302 -69368045 - AluSx SINE Alu 0 312 2 1542 126 5 0 chr4 132961734 132961956 -69366391 - AluSq SINE Alu -84 229 7 21 0 0 0 chr4 132962815 132962836 -69365511 + AT_rich Low_complexity Low_complexity 1 21 0 263 287 19 32 chr4 132962991 132963148 -69365199 - L1MCc LINE L1 -6220 203 49 466 71 0 0 chr4 132963702 132963772 -69364575 + AluSp/q SINE Alu 240 309 -4 1120 50 0 0 chr4 132964503 132964642 -69363705 - L1PA5 LINE L1 -4 6150 6012 335 311 189 16 chr4 132964756 132964946 -69363401 + MIR SINE MIR 28 250 -12 2064 127 0 7 chr4 132965223 132965530 -69362817 + AluSg SINE Alu 1 305 -5 1234 215 13 58 chr4 132966150 132966462 -69361885 + AluJo SINE Alu 2 299 -3 28 61 0 0 chr4 132967057 132967106 -69361241 + AT_rich Low_complexity Low_complexity 1 49 0 2535 196 40 15 chr4 132967205 132967731 -69360616 - MER44D DNA MER2_type -1 604 11 1563 140 85 47 chr4 132968327 132968669 -69359678 + THE1C LTR MaLR 1 355 -20 1351 201 95 7 chr4 132968656 132968960 -69359387 + MLT1D LTR MaLR 173 503 -2 * 417 180 11 11 chr4 132969270 132969359 -69358988 + THE1C LTR MaLR 338 426 0 1949 145 49 29 chr4 132969359 132969710 -69358637 + THE1C-int LTR MaLR 1 362 -1289 2467 60 0 0 chr4 132969710 132970009 -69358338 - AluY SINE Alu -12 299 1 1949 145 49 29 chr4 132970009 132970043 -69358304 + THE1C-int LTR MaLR 362 394 -1257 2449 59 30 0 chr4 132970043 132970380 -69357967 + L1PA5 LINE L1 5808 6154 0 21 36 0 0 chr4 132970837 132970865 -69357482 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 132971046 132971068 -69357279 + AT_rich Low_complexity Low_complexity 1 22 0 218 364 57 24 chr4 132971313 132971522 -69356825 - L2 LINE L2 -628 2686 2471 294 316 65 22 chr4 132971999 132972138 -69356209 + MIR3 SINE MIR 1 145 -63 2370 73 3 0 chr4 132972168 132972468 -69355879 + AluY SINE Alu 1 301 -10 21 0 0 0 chr4 132974672 132974693 -69353654 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 132974910 132974938 -69353409 + AT_rich Low_complexity Low_complexity 1 28 0 287 319 85 21 chr4 132976648 132976789 -69351558 + L2 LINE L2 3123 3272 0 190 228 18 149 chr4 132977107 132977221 -69351126 - L2 LINE L2 -177 3095 2997 194 371 79 11 chr4 132978261 132978350 -69349997 + L2 LINE L2 3123 3217 -55 1965 114 0 36 chr4 132978730 132979037 -69349310 + AluSg SINE Alu 1 296 -14 273 167 26 26 chr4 132979055 132979133 -69349214 + (TA)n Simple_repeat Simple_repeat 2 79 0 11291 105 10 1 chr4 132979400 132981083 -69347264 + L1P LINE L1 2959 4656 -1490 680 71 20 20 chr4 132981183 132981282 -69347065 - L1PA6 LINE L1 -176 5978 5880 218 191 106 0 chr4 132981335 132981382 -69346965 + L2 LINE L2 3262 3313 0 2209 115 3 3 chr4 132981684 132981996 -69346351 + AluSx SINE Alu 1 312 0 209 319 147 9 chr4 132982686 132982802 -69345545 + MIR SINE MIR 72 203 -59 1791 78 8 0 chr4 132982914 132983157 -69345190 + L1PA7 LINE L1 5909 6153 -1 415 322 35 17 chr4 132983181 132983355 -69344992 - MIR SINE MIR -3 259 83 23 0 0 0 chr4 132983437 132983460 -69344887 + AT_rich Low_complexity Low_complexity 1 23 0 187 213 16 30 chr4 132983654 132983716 -69344631 + MIR SINE MIR 87 143 -65 287 167 0 186 chr4 132984720 132984822 -69343525 - MIR3 SINE MIR -6 202 120 22 35 0 0 chr4 132986031 132986060 -69342287 + AT_rich Low_complexity Low_complexity 1 29 0 202 27 0 54 chr4 132986293 132986330 -69342017 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 972 97 8 0 chr4 132988360 132988494 -69339853 - AluSg/x SINE Alu -14 296 162 1019 219 142 34 chr4 132988634 132988986 -69339361 - MLT1B LTR MaLR 0 390 1 2261 100 3 0 chr4 132990301 132990602 -69337745 + AluSp SINE Alu 1 302 -11 2869 218 19 9 chr4 132991192 132991884 -69336463 + L1 LINE L1 4666 5364 -782 213 118 0 59 chr4 132993691 132993742 -69334605 + (TA)n Simple_repeat Simple_repeat 1 48 0 2463 113 0 8 chr4 132993743 132994114 -69334233 + L1PB1 LINE L1 5783 6150 -1 276 348 11 0 chr4 132994219 132994308 -69334039 - MIR3 SINE MIR -4 204 115 3069 264 168 16 chr4 132994990 132995914 -69332433 + L1M2b LINE L1 291 1470 -5739 1590 199 46 15 chr4 132995914 132996241 -69332106 - MER1B DNA MER1_type 0 337 1 3069 264 168 16 chr4 132996241 132996617 -69331730 + L1M2b LINE L1 1470 1788 -5421 917 203 42 13 chr4 132996606 132996842 -69331505 + L1 LINE L1 5021 5263 -883 * 1261 228 31 4 chr4 132997531 132997785 -69330562 + Tigger7 DNA MER2_type 1 261 -2226 406 158 207 0 chr4 132997788 132997870 -69330477 + Tigger7 DNA MER2_type 2488 2586 -1 21 57 0 0 chr4 132997889 132997924 -69330423 + AT_rich Low_complexity Low_complexity 1 35 0 441 151 0 0 chr4 132998472 132998558 -69329789 + (TA)n Simple_repeat Simple_repeat 2 87 0 25 51 0 0 chr4 132999559 132999598 -69328749 + AT_rich Low_complexity Low_complexity 1 39 0 7139 145 24 2 chr4 132999685 133000854 -69327493 + L1P3 LINE L1 7 1201 -5260 6898 60 7 0 chr4 133000955 133002450 -69325897 + L1PA8 LINE L1 4655 6155 -17 188 0 74 0 chr4 133002453 133002480 -69325867 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr4 133002694 133002717 -69325630 + AT_rich Low_complexity Low_complexity 1 23 0 200 213 0 0 chr4 133003341 133003388 -69324959 + T-rich Low_complexity Low_complexity 1 47 0 207 0 0 0 chr4 133003735 133003758 -69324589 + (TA)n Simple_repeat Simple_repeat 1 23 0 240 59 0 0 chr4 133003758 133003792 -69324555 + (T)n Simple_repeat Simple_repeat 1 34 0 452 123 8 82 chr4 133003793 133003915 -69324432 + AluSp/q SINE Alu 185 297 -16 295 22 0 43 chr4 133004548 133004594 -69323753 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1952 89 0 4 chr4 133005156 133005413 -69322934 - AluY SINE Alu -19 292 37 22 56 0 0 chr4 133005851 133005887 -69322460 + AT_rich Low_complexity Low_complexity 1 36 0 209 330 0 30 chr4 133005999 133006099 -69322248 + MIR SINE MIR 141 237 -25 2174 91 0 42 chr4 133006118 133006426 -69321921 - AluY SINE Alu -15 296 2 22 0 0 0 chr4 133006792 133006814 -69321533 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr4 133006938 133006974 -69321373 + AT_rich Low_complexity Low_complexity 1 36 0 216 200 0 0 chr4 133008004 133008049 -69320298 + (TA)n Simple_repeat Simple_repeat 1 45 0 308 194 108 65 chr4 133008063 133008156 -69320191 - MIR SINE MIR -54 208 112 33 56 0 0 chr4 133008650 133008704 -69319643 + AT_rich Low_complexity Low_complexity 1 54 0 1149 164 19 5 chr4 133010111 133010324 -69318023 + AluSg/x SINE Alu 69 284 -26 237 108 0 0 chr4 133010329 133010366 -69317981 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 28 48 0 0 chr4 133010512 133010554 -69317793 + AT_rich Low_complexity Low_complexity 1 42 0 364 256 31 12 chr4 133010842 133011002 -69317345 + L1M4 LINE L1 2872 3034 -3112 2934 176 7 17 chr4 133011029 133011603 -69316744 - L1MB4 LINE L1 -26 6154 5587 882 74 16 0 chr4 133011723 133011844 -69316503 - AluY SINE Alu -188 123 1 2598 79 25 8 chr4 133012040 133012396 -69315951 + THE1B LTR MaLR 1 362 -2 2302 90 6 3 chr4 133014969 133015281 -69313066 + AluSp SINE Alu 1 313 0 766 232 35 15 chr4 133016904 133017102 -69311245 - L1PA16 LINE L1 -21 6145 5944 717 132 31 8 chr4 133017159 133017288 -69311059 + MSTB LTR MaLR 1 132 -294 230 284 58 76 chr4 133018422 133018764 -69309583 + HAL1 LINE L1 7 342 -2165 2333 156 62 19 chr4 133019496 133019982 -69308365 + L1MA4 LINE L1 5787 6293 -7 525 266 82 33 chr4 133019997 133020181 -69308166 + MER77 LTR ERV1 304 496 -109 382 258 63 44 chr4 133020156 133020315 -69308032 + MER77 LTR ERV1 428 589 -16 * 27 0 0 0 chr4 133020379 133020406 -69307941 + AT_rich Low_complexity Low_complexity 1 27 0 306 230 27 14 chr4 133020927 133021001 -69307346 - MIR SINE MIR -67 141 67 257 87 0 22 chr4 133021075 133021121 -69307226 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 223 114 23 23 chr4 133021287 133021331 -69307016 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chr4 133022462 133022484 -69305863 + AT_rich Low_complexity Low_complexity 1 22 0 401 315 89 7 chr4 133023242 133023388 -69304959 + MIR SINE MIR 2 159 -103 209 189 0 0 chr4 133023499 133023536 -69304811 + (TG)n Simple_repeat Simple_repeat 1 37 0 351 277 0 26 chr4 133023546 133023701 -69304646 - L1MB8 LINE L1 -2 6176 6026 2112 123 0 0 chr4 133024375 133024667 -69303680 + AluSg SINE Alu 5 296 -14 1132 140 11 0 chr4 133025794 133025973 -69302374 + L1M2 LINE L1 5518 5698 -602 373 370 139 15 chr4 133027076 133027487 -69300860 - L2 LINE L2 -1042 2272 1811 495 308 27 0 chr4 133027881 133028027 -69300320 - MIR SINE MIR -99 163 14 385 303 63 84 chr4 133028109 133028476 -69299871 - LTR67 LTR ERVL -104 453 95 203 189 0 0 chr4 133028515 133028552 -69299795 + A-rich Low_complexity Low_complexity 1 37 0 301 398 55 19 chr4 133028582 133029057 -69299290 - L2 LINE L2 -2292 1022 531 201 74 0 0 chr4 133029298 133029325 -69299022 + (GA)n Simple_repeat Simple_repeat 1 27 0 272 227 67 13 chr4 133029518 133029593 -69298754 - MIR SINE MIR -179 83 5 292 330 38 9 chr4 133029814 133029920 -69298427 + MLT1K LTR MaLR 123 231 -357 304 292 54 39 chr4 133032266 133032396 -69295951 + HAL1b LINE L1 775 906 -442 28 61 0 0 chr4 133032716 133032765 -69295582 + AT_rich Low_complexity Low_complexity 1 49 0 576 275 111 0 chr4 133033729 133033848 -69294499 + L1MA9 LINE L1 6026 6130 -182 285 29 0 0 chr4 133033848 133033882 -69294465 + (CA)n Simple_repeat Simple_repeat 1 34 0 576 275 111 0 chr4 133033882 133033969 -69294378 + L1MA9 LINE L1 6130 6255 -57 1206 142 9 30 chr4 133034448 133034681 -69293666 + AluSq SINE Alu 1 228 -85 2204 91 0 17 chr4 133035389 133035685 -69292662 + AluSq SINE Alu 1 291 -22 187 348 123 29 chr4 133035988 133036192 -69292155 - L2 LINE L2 -491 2823 2601 616 298 49 9 chr4 133036230 133036455 -69291892 - MIR SINE MIR 0 262 29 241 283 206 0 chr4 133036705 133036797 -69291550 - L2 LINE L2 -1 3312 3202 23 33 0 0 chr4 133037139 133037169 -69291178 + AT_rich Low_complexity Low_complexity 1 30 0 1153 43 6 55 chr4 133037796 133037959 -69290388 - L1PA5 LINE L1 -193 5961 5807 904 330 87 37 chr4 133038532 133039122 -69289225 - HERVL LTR ERVL -1634 4020 3384 1503 146 79 62 chr4 133039122 133039491 -69288856 + THE1C LTR MaLR 1 375 0 904 330 87 37 chr4 133039491 133039637 -69288710 - HERVL LTR ERVL -2270 3384 3247 1537 240 29 31 chr4 133040152 133040568 -69287779 - LTR52 LTR ERVL -6 415 1 475 219 34 73 chr4 133040865 133041043 -69287304 - L1M4 LINE L1 -2024 4122 3952 325 200 27 0 chr4 133041103 133041178 -69287169 - L1M4 LINE L1 -3130 3016 2940 833 225 86 118 chr4 133041180 133041962 -69286385 - L1M4 LINE L1 -2192 3954 3198 21 0 0 0 chr4 133041963 133041984 -69286363 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr4 133041998 133042024 -69286323 + (TAA)n Simple_repeat Simple_repeat 2 27 0 23 54 0 0 chr4 133042228 133042265 -69286082 + AT_rich Low_complexity Low_complexity 1 37 0 492 296 73 64 chr4 133042378 133042461 -69285886 - L1MC/D LINE L1 -2009 5799 5718 2287 89 0 7 chr4 133042461 133042754 -69285593 + AluSx SINE Alu 5 295 -17 492 296 73 64 chr4 133042754 133043093 -69285254 - L1MC/D LINE L1 -2090 5718 5373 362 323 54 45 chr4 133043149 133043462 -69284885 - L1MC/D LINE L1 -837 5309 4994 193 234 62 47 chr4 133043575 133043639 -69284708 - L2 LINE L2 -1593 1721 1657 199 384 134 6 chr4 133043731 133043895 -69284452 + L2 LINE L2 2570 2754 -560 451 260 133 5 chr4 133044449 133044645 -69283702 - HAL1 LINE L1 -893 1614 1394 1163 163 19 35 chr4 133044657 133045016 -69283331 + Tigger2a DNA MER2_type 1 434 0 2070 70 4 4 chr4 133045356 133045626 -69282721 - AluY SINE Alu -41 270 1 996 141 6 0 chr4 133045955 133046111 -69282236 - AluJb SINE Alu -4 308 152 444 221 0 0 chr4 133046111 133046206 -69282141 - pTR5 LTR ERV1 -1596 842 748 951 191 17 39 chr4 133046211 133046442 -69281905 - AluJb SINE Alu -86 226 1 642 280 21 21 chr4 133147524 133147767 -69180580 + Charlie3 DNA MER1_type 1 243 -2467 3776 135 143 106 chr4 133148473 133149802 -69178545 - pTR5 LTR ERV1 0 2438 68 735 276 49 10 chr4 133151421 133151624 -69176723 - MER58A DNA MER1_type -4 220 10 28 48 0 0 chr4 133153095 133153137 -69175210 + AT_rich Low_complexity Low_complexity 1 42 0 285 344 8 16 chr4 133153753 133153875 -69174472 - L2 LINE L2 -243 3029 2909 744 335 52 0 chr4 133153889 133154199 -69174148 + HERV16 LTR ERVL 8 333 -4663 1238 318 21 27 chr4 133154830 133155345 -69173002 + HERV16 LTR ERVL 1063 1574 -3422 558 276 48 0 chr4 133156286 133156431 -69171916 + MER5A DNA MER1_type 6 157 -32 197 241 0 56 chr4 133156483 133156537 -69171810 + L2 LINE L2 3251 3301 -12 293 0 0 26 chr4 133156779 133156817 -69171530 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 5390 153 50 17 chr4 133156819 133157939 -69170408 - L1MA8 LINE L1 -10 6281 5127 385 276 194 0 chr4 133157999 133158133 -69170214 - MIR SINE MIR -64 198 39 473 193 0 0 chr4 133158176 133158264 -69170083 + L1MA10 LINE L1 6214 6301 -33 202 233 0 55 chr4 133158557 133158630 -69169717 + T-rich Low_complexity Low_complexity 2 70 0 972 299 99 7 chr4 133158707 133159111 -69169236 + LTR40c LTR ERVL 18 458 -7 383 314 58 0 chr4 133159308 133159445 -69168902 + MIR SINE MIR 91 235 -27 758 213 12 25 chr4 133160143 133160303 -69168044 + Tigger5 DNA MER2_type 1 158 -2165 390 111 32 0 chr4 133160298 133160361 -69167986 - Tigger5 DNA MER2_type -160 2163 2099 * 21 57 0 0 chr4 133161022 133161057 -69167290 + AT_rich Low_complexity Low_complexity 1 35 0 490 238 85 1 chr4 133161114 133161277 -69167070 - L1MC/D LINE L1 -675 5684 5526 274 226 35 26 chr4 133161377 133161492 -69166855 - L1MA10 LINE L1 -12 6322 6207 2652 330 53 31 chr4 133161738 133163112 -69165235 + HERV16 LTR ERVL 1952 3295 -2359 2732 79 3 16 chr4 133163112 133163492 -69164855 + THE1C LTR MaLR 1 375 0 2652 330 53 31 chr4 133163492 133163664 -69164683 + HERV16 LTR ERVL 3295 3462 -2192 731 200 0 0 chr4 133163664 133163784 -69164563 + FLAM_A SINE Alu 1 120 -13 2652 330 53 31 chr4 133163784 133164087 -69164260 + HERV16 LTR ERVL 3462 3833 -1821 6261 96 14 1 chr4 133164628 133165706 -69162641 + L1PA12 LINE L1 5068 6168 0 4538 174 20 8 chr4 133165784 133166587 -69161760 + THE1-int LTR MaLR 463 1275 -305 34 42 0 0 chr4 133166633 133166681 -69161666 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr4 133166800 133166821 -69161526 + AT_rich Low_complexity Low_complexity 1 21 0 2182 87 13 16 chr4 133167987 133168297 -69160050 - AluY SINE Alu -2 309 1 270 0 0 0 chr4 133170020 133170050 -69158297 + (TTTAA)n Simple_repeat Simple_repeat 2 31 0 1810 151 20 13 chr4 133170050 133170349 -69157998 - AluJb SINE Alu -11 301 1 21 0 0 0 chr4 133170358 133170379 -69157968 + AT_rich Low_complexity Low_complexity 1 21 0 909 241 69 35 chr4 133170397 133170658 -69157689 - MER21B LTR ERV1 -11 852 583 301 154 19 0 chr4 133170776 133170828 -69157519 - MLT1G1 LTR MaLR 0 595 543 180 316 0 18 chr4 133171381 133171438 -69156909 + MIR SINE MIR 102 157 -105 272 277 185 8 chr4 133171658 133171788 -69156559 - L2 LINE L2 -7 3306 3154 313 375 90 27 chr4 133172003 133172560 -69155787 - L2 LINE L2 -252 3061 2468 1679 171 4 4 chr4 133174233 133174514 -69153833 + AluJb SINE Alu 20 300 -12 226 145 0 65 chr4 133174600 133174662 -69153685 - LTR66 LTR ERVL -156 454 397 630 92 10 0 chr4 133175883 133175981 -69152366 - L1MA3 LINE L1 0 6305 6207 225 146 0 36 chr4 133177721 133177776 -69150571 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 27 0 0 0 chr4 133178248 133178275 -69150072 + AT_rich Low_complexity Low_complexity 1 27 0 283 330 154 0 chr4 133178519 133178707 -69149640 + L2 LINE L2 3046 3262 -51 441 281 29 7 chr4 133178864 133179003 -69149344 - L2 LINE L2 -10 3303 3162 22 35 0 0 chr4 133179845 133179874 -69148473 + AT_rich Low_complexity Low_complexity 1 29 0 265 235 97 92 chr4 133180379 133180467 -69147880 - L1ME3 LINE L1 -2 6396 6310 207 0 0 0 chr4 133180467 133180490 -69147857 + (CA)n Simple_repeat Simple_repeat 2 24 0 265 235 97 92 chr4 133180490 133180597 -69147750 - L1ME3 LINE L1 -88 6310 6200 1052 276 105 15 chr4 133180599 133181056 -69147291 - L1ME3 LINE L1 -252 6148 5651 571 253 149 33 chr4 133181057 133181298 -69147049 - MLT1D LTR MaLR -2 503 235 681 271 65 78 chr4 133181329 133182089 -69146258 - L1ME3 LINE L1 -4612 1951 1078 2237 56 16 30 chr4 133182089 133182394 -69145953 - AluY SINE Alu -10 301 1 681 271 65 78 chr4 133182394 133182494 -69145853 - L1ME3 LINE L1 -5485 1078 978 22 35 0 0 chr4 133182758 133182787 -69145560 + GC_rich Low_complexity Low_complexity 1 29 0 3099 139 70 73 chr4 133182910 133183648 -69144699 + pTR5 LTR ERV1 292 2198 -240 2132 106 14 0 chr4 133183938 133184230 -69144117 - AluY SINE Alu -13 298 3 480 285 57 21 chr4 133184839 133185032 -69143315 - MIR SINE MIR 0 262 63 2009 193 93 47 chr4 133185985 133186477 -69141870 + MLT2B3 LTR ERVL 1 515 -39 321 165 76 13 chr4 133186498 133186577 -69141770 + Ricksha DNA DNA 830 913 -1133 1529 168 73 25 chr4 133186663 133187021 -69141326 + THE1C LTR MaLR 1 375 0 1978 72 4 8 chr4 133187207 133187469 -69140878 + AluY SINE Alu 1 261 -50 2231 91 0 3 chr4 133187683 133187980 -69140367 - AluSg1 SINE Alu -13 296 1 23 0 0 0 chr4 133188063 133188086 -69140261 + AT_rich Low_complexity Low_complexity 1 23 0 231 328 0 0 chr4 133188416 133188483 -69139864 + L2 LINE L2 2980 3046 -226 411 326 20 7 chr4 133188533 133188680 -69139667 - L2 LINE L2 -4 3309 3161 643 221 8 0 chr4 133188699 133188821 -69139526 + FLAM_C SINE Alu 3 125 -18 614 213 8 0 chr4 133189344 133189471 -69138876 - Charlie2a DNA MER1_type -1224 1638 1511 256 322 149 37 chr4 133189709 133189951 -69138396 - Charlie2a DNA MER1_type -2513 269 1 378 254 114 0 chr4 133189972 133190086 -69138261 + MER94 DNA DNA 6 132 -2 205 96 77 0 chr4 133190192 133190244 -69138103 + (TATAA)n Simple_repeat Simple_repeat 4 59 0 21 0 0 0 chr4 133191146 133191167 -69137180 + AT_rich Low_complexity Low_complexity 1 21 0 180 222 0 0 chr4 133192195 133192231 -69136116 + L3 LINE CR1 1542 1577 0 206 211 0 0 chr4 133194246 133194284 -69134063 + L2 LINE L2 70 107 -3207 24625 27 2 1 chr4 133194284 133198024 -69130323 - L1PA3 LINE L1 -2 6153 2411 356 98 0 0 chr4 133198024 133198075 -69130272 + L1P LINE L1 760 810 -5336 3369 292 113 75 chr4 133198250 133199095 -69129252 + L2 LINE L2 194 1006 -2308 282 73 0 0 chr4 133199095 133199136 -69129211 + (CA)n Simple_repeat Simple_repeat 1 41 0 3369 292 113 75 chr4 133199136 133200511 -69127836 + L2 LINE L2 1006 2498 -816 1063 312 97 18 chr4 133200498 133201134 -69127213 - L2 LINE L2 -1 3312 2641 * 23 33 0 0 chr4 133203856 133203886 -69124461 + AT_rich Low_complexity Low_complexity 1 30 0 27 62 0 0 chr4 133204393 133204441 -69123906 + AT_rich Low_complexity Low_complexity 1 48 0 191 274 113 0 chr4 133204827 133204889 -69123458 - L2 LINE L2 -8 3305 3237 24 0 0 0 chr4 133205378 133205402 -69122945 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 133206829 133206851 -69121496 + AT_rich Low_complexity Low_complexity 1 22 0 289 289 0 44 chr4 133209287 133209377 -69118970 - L2 LINE L2 -1 3271 3186 318 381 31 31 chr4 133209598 133209792 -69118555 - MIR SINE MIR -49 213 20 21 0 0 0 chr4 133210073 133210094 -69118253 + AT_rich Low_complexity Low_complexity 1 21 0 37 81 0 0 chr4 133210170 133210256 -69118091 + AT_rich Low_complexity Low_complexity 1 86 0 28 29 0 0 chr4 133210577 133210612 -69117735 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 133211807 133211830 -69116517 + AT_rich Low_complexity Low_complexity 1 23 0 201 359 46 90 chr4 133212855 133213178 -69115169 - L2 LINE L2 0 3272 2964 24 53 0 0 chr4 133215720 133215758 -69112589 + AT_rich Low_complexity Low_complexity 1 38 0 22 70 0 0 chr4 133216258 133216301 -69112046 + AT_rich Low_complexity Low_complexity 1 43 0 376 192 20 0 chr4 133216993 133217092 -69111255 + (CTA)n Simple_repeat Simple_repeat 2 102 0 1822 44 0 13 chr4 133217185 133217411 -69110936 + AluY SINE Alu 71 293 -18 227 327 167 37 chr4 133217415 133217577 -69110770 + MER5A DNA MER1_type 4 186 -3 28 29 0 0 chr4 133217598 133217633 -69110714 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr4 133217911 133217937 -69110410 + AT_rich Low_complexity Low_complexity 1 26 0 562 325 0 6 chr4 133218020 133218177 -69110170 + MIR SINE MIR 45 200 -62 1780 99 22 102 chr4 133218304 133218626 -69109721 + AluYb8 SINE Alu 1 296 -22 269 250 79 0 chr4 133220807 133220883 -69107464 + MIR SINE MIR 127 208 -54 22 0 0 0 chr4 133221439 133221461 -69106886 + AT_rich Low_complexity Low_complexity 1 22 0 358 337 74 0 chr4 133221881 133222044 -69106303 - MIR SINE MIR -51 211 37 24 0 0 0 chr4 133222047 133222071 -69106276 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 133222244 133222265 -69106082 + AT_rich Low_complexity Low_complexity 1 21 0 203 256 78 44 chr4 133223706 133223796 -69104551 + MIR SINE MIR 53 145 -117 2138 128 0 3 chr4 133224138 133224442 -69103905 - AluSq SINE Alu -10 303 1 1289 202 16 40 chr4 133224837 133225090 -69103257 + Tigger7 DNA MER2_type 1 247 -2240 231 114 0 0 chr4 133225104 133225139 -69103208 + (TA)n Simple_repeat Simple_repeat 1 35 0 503 230 9 26 chr4 133225148 133225261 -69103086 + Tigger7 DNA MER2_type 2377 2487 0 618 346 68 25 chr4 133225532 133225899 -69102448 - L2 LINE L2 0 3313 2931 221 109 22 0 chr4 133226018 133226064 -69102283 + T-rich Low_complexity Low_complexity 2 48 0 10937 201 27 39 chr4 133226280 133228839 -69099508 - L1PA16 LINE L1 -20 6849 4371 231 36 0 0 chr4 133228839 133228867 -69099480 + (TTG)n Simple_repeat Simple_repeat 3 30 0 10937 201 27 39 chr4 133228867 133230114 -69098233 - L1PA16 LINE L1 -2498 4371 3110 493 256 0 0 chr4 133230106 133230227 -69098120 - L1PA16 LINE L1 -3987 2862 2742 * 963 231 22 48 chr4 133230227 133230495 -69097852 + MSTD LTR MaLR 136 396 0 2616 176 43 83 chr4 133230495 133231330 -69097017 + L1MC1 LINE L1 5538 6333 0 4909 86 12 1 chr4 133231331 133232007 -69096340 + L1PA10 LINE L1 5476 6158 -10 1898 116 14 14 chr4 133232046 133232330 -69096017 + AluSq SINE Alu 1 284 -29 2199 203 34 12 chr4 133233386 133233884 -69094463 - L1MC3 LINE L1 0 7785 7277 1767 262 32 22 chr4 133233882 133234474 -69093873 - L1MCa LINE L1 -1887 4539 3942 * 555 183 17 8 chr4 133234513 133234633 -69093714 - MER65A LTR ERV1 0 445 325 5166 141 22 21 chr4 133234755 133235467 -69092880 - L1PA16 LINE L1 -9 6157 5442 2035 148 3 3 chr4 133235467 133235778 -69092569 - AluSx SINE Alu -1 311 1 5166 141 22 21 chr4 133235778 133236060 -69092287 - L1PA16 LINE L1 -724 5442 5162 840 240 36 10 chr4 133236064 133236260 -69092087 - MER65B LTR ERV1 -330 201 1 * 2039 200 51 87 chr4 133236260 133236843 -69091504 - MER77 LTR ERV1 -43 562 1 2455 269 61 60 chr4 133236843 133237505 -69090842 - L1MCa LINE L1 -2484 3942 3282 898 70 0 0 chr4 133237505 133237619 -69090728 - L1PA7 LINE L1 -4 6150 6037 2455 269 61 60 chr4 133237619 133238807 -69089540 - L1MCa LINE L1 -3144 3282 2049 291 130 0 0 chr4 133238867 133238921 -69089426 + (TA)n Simple_repeat Simple_repeat 2 55 0 1774 127 0 8 chr4 133239505 133239772 -69088575 - AluSx SINE Alu -17 295 31 2044 123 3 30 chr4 133240679 133240981 -69087366 - AluSg SINE Alu -16 294 1 207 0 0 0 chr4 133242175 133242198 -69086149 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 183 364 0 0 chr4 133242441 133242496 -69085851 - L2 LINE L2 -7 3265 3211 180 0 0 0 chr4 133242636 133242656 -69085691 + (A)n Simple_repeat Simple_repeat 1 20 0 227 327 19 9 chr4 133242843 133242950 -69085397 + L1ME4a LINE L1 5512 5619 -502 233 325 24 0 chr4 133242993 133243076 -69085271 + L2 LINE L2 3188 3272 0 362 313 71 17 chr4 133243076 133243316 -69085031 + L1ME4a LINE L1 5694 5946 -175 734 268 18 31 chr4 133244478 133244702 -69083645 + MER58A DNA MER1_type 4 224 0 308 254 136 27 chr4 133245084 133245194 -69083153 + L1MEd LINE L1 1062 1183 -4936 249 163 0 0 chr4 133245553 133245602 -69082745 + (TA)n Simple_repeat Simple_repeat 2 50 0 554 246 158 0 chr4 133246018 133246258 -69082089 + HsTC2 DNA Tc2 1613 1890 -8 822 300 47 30 chr4 133246263 133246790 -69081557 + L1ME3A LINE L1 564 1099 -5020 536 218 77 18 chr4 133246872 133247042 -69081305 + HsTC2 DNA Tc2 1569 1748 -150 225 254 15 15 chr4 133247150 133247217 -69081130 + (TA)n Simple_repeat Simple_repeat 1 67 0 230 188 31 42 chr4 133247231 133247327 -69081020 + (TATAA)n Simple_repeat Simple_repeat 1 95 0 243 204 0 0 chr4 133247337 133247391 -69080956 + (TA)n Simple_repeat Simple_repeat 1 54 0 353 289 48 24 chr4 133247417 133247666 -69080681 + L1ME3A LINE L1 2422 2676 -3453 326 280 157 24 chr4 133247687 133247973 -69080374 - L2 LINE L2 -1108 2206 1804 1983 106 0 0 chr4 133248177 133248499 -69079848 - AluY SINE Alu 0 322 1 246 272 84 24 chr4 133248535 133248748 -69079599 + L1ME3A LINE L1 2951 3176 -2953 330 311 50 54 chr4 133249101 133249361 -69078986 + L1ME3A LINE L1 5665 5923 -230 221 233 33 33 chr4 133249452 133249542 -69078805 + (TAAAG)n Simple_repeat Simple_repeat 4 93 0 323 243 18 30 chr4 133249603 133249772 -69078575 + GA-rich Low_complexity Low_complexity 5 171 0 22 0 0 0 chr4 133251900 133251922 -69076425 + AT_rich Low_complexity Low_complexity 1 22 0 249 108 0 0 chr4 133252672 133252709 -69075638 + (A)n Simple_repeat Simple_repeat 1 37 0 300 53 0 0 chr4 133253039 133253077 -69075270 + (TG)n Simple_repeat Simple_repeat 1 38 0 728 266 23 8 chr4 133254725 133254981 -69073366 + MER46C DNA MER2_type 79 338 0 2045 117 0 23 chr4 133255000 133255307 -69073040 + AluY SINE Alu 1 300 -11 21 0 0 0 chr4 133255316 133255337 -69073010 + AT_rich Low_complexity Low_complexity 1 21 0 926 145 42 26 chr4 133255558 133255751 -69072596 - L1MA4A LINE L1 -304 5999 5804 668 171 0 16 chr4 133255752 133255881 -69072466 - L1M2 LINE L1 -4599 2250 2124 580 156 0 0 chr4 133255896 133255986 -69072361 - AluSg/x SINE Alu -21 291 202 3888 250 44 19 chr4 133256008 133257071 -69071276 - L1M2 LINE L1 -4788 2061 972 208 254 75 0 chr4 133257217 133257284 -69071063 + L2 LINE L2 3201 3272 0 816 306 38 4 chr4 133258531 133258792 -69069555 + MER46C DNA MER2_type 68 337 -1 1077 179 0 31 chr4 133259107 133259303 -69069044 - AluJb SINE Alu -2 310 121 4721 170 27 7 chr4 133259446 133259987 -69068360 + L1PA16 LINE L1 4869 5398 -768 1676 147 218 8 chr4 133259987 133260341 -69068006 + MSTA LTR MaLR 1 428 0 4721 170 27 7 chr4 133260341 133261077 -69067270 + L1PA16 LINE L1 5398 6164 -2 31 58 0 0 chr4 133261077 133261129 -69067218 + AT_rich Low_complexity Low_complexity 1 52 0 523 344 21 0 chr4 133261414 133261600 -69066747 + MER63A DNA MER1_type 17 206 -4 25 51 0 0 chr4 133261635 133261674 -69066673 + AT_rich Low_complexity Low_complexity 1 39 0 915 235 20 0 chr4 133261674 133261874 -69066473 - L1PA16 LINE L1 -2 6164 5961 1003 198 9 53 chr4 133261883 133262110 -69066237 + MSTD LTR MaLR 180 396 0 922 218 111 101 chr4 133262209 133262634 -69065713 + MLT2B1 LTR ERVL 1 478 -42 197 111 44 0 chr4 133262635 133262680 -69065667 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 755 259 13 47 chr4 133262758 133263069 -69065278 + L2 LINE L2 2770 3063 -250 263 170 32 32 chr4 133263198 133263292 -69065055 + (TA)n Simple_repeat Simple_repeat 2 95 0 2724 201 10 22 chr4 133263292 133263884 -69064463 + L1MC1 LINE L1 5745 6329 -4 31 26 0 0 chr4 133264288 133264326 -69064021 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr4 133264497 133264525 -69063822 + AT_rich Low_complexity Low_complexity 1 28 0 1802 191 70 22 chr4 133266199 133266612 -69061735 - Tigger2a DNA MER2_type -1 433 1 396 257 48 70 chr4 133266886 133267073 -69061274 - MIR SINE MIR -5 257 75 15267 110 25 6 chr4 133268773 133271369 -69056978 + Charlie3 DNA MER1_type 1 2705 -5 205 283 76 33 chr4 133271761 133271853 -69056494 + MIR SINE MIR 50 145 -117 22 35 0 0 chr4 133272005 133272034 -69056313 + AT_rich Low_complexity Low_complexity 1 29 0 201 94 0 0 chr4 133273308 133273340 -69055007 + (CAAAT)n Simple_repeat Simple_repeat 3 34 0 189 304 108 20 chr4 133273571 133273673 -69054674 + MIR SINE MIR 77 187 -75 307 184 76 0 chr4 133273827 133273906 -69054441 - MIR SINE MIR -65 143 100 495 271 123 45 chr4 133274578 133275137 -69053210 - L2 LINE L2 -19 3294 2630 424 242 11 77 chr4 133275150 133275332 -69053015 - L2 LINE L2 0 3313 3144 395 304 51 7 chr4 133275370 133275508 -69052839 - L2 LINE L2 -1102 2212 2069 476 356 45 20 chr4 133275525 133275817 -69052530 - L2 LINE L2 -186 3127 2829 * 2672 295 39 29 chr4 133275813 133276719 -69051628 - L2 LINE L2 -675 2639 1725 407 315 127 19 chr4 133277004 133277217 -69051130 + MIR SINE MIR 19 254 -8 1675 172 43 0 chr4 133278823 133279102 -69049245 - AluSx SINE Alu -21 291 1 345 306 131 52 chr4 133279227 133279456 -69048891 + MIR SINE MIR 6 252 -10 2166 223 78 41 chr4 133279825 133281154 -69047193 + Charlie1a DNA MER1_type 1 1450 -5 255 324 48 9 chr4 133281429 133281534 -69046813 - L2 LINE L2 -6 3307 3199 27 0 0 0 chr4 133282908 133282935 -69045412 + AT_rich Low_complexity Low_complexity 1 27 0 35 24 0 0 chr4 133283109 133283151 -69045196 + AT_rich Low_complexity Low_complexity 1 42 0 259 231 102 46 chr4 133290176 133290284 -69038063 + MIR SINE MIR 89 202 -60 25 31 0 0 chr4 133291160 133291192 -69037155 + AT_rich Low_complexity Low_complexity 1 32 0 253 125 45 45 chr4 133291390 133291492 -69036855 + (TATAA)n Simple_repeat Simple_repeat 1 102 0 3440 116 7 42 chr4 133292891 133293436 -69034911 - MER1A DNA MER1_type 0 527 2 437 289 7 14 chr4 133293777 133293919 -69034428 - MIR SINE MIR -35 227 87 431 352 57 5 chr4 133294903 133295113 -69033234 + MIR SINE MIR 13 233 -29 382 69 17 60 chr4 133295547 133295663 -69032684 + (TTTA)n Simple_repeat Simple_repeat 4 114 0 26 0 0 0 chr4 133295663 133295689 -69032658 + AT_rich Low_complexity Low_complexity 1 26 0 626 160 19 0 chr4 133297479 133297585 -69030762 + HY1 scRNA scRNA 2 109 -3 23 0 0 0 chr4 133297922 133297945 -69030402 + AT_rich Low_complexity Low_complexity 1 23 0 27 81 0 0 chr4 133298105 133298167 -69030180 + AT_rich Low_complexity Low_complexity 1 62 0 2054 119 3 3 chr4 133298167 133298453 -69029894 - AluSc SINE Alu -23 286 1 204 388 12 12 chr4 133298620 133298705 -69029642 - L2 LINE L2 -3 3269 3185 236 30 30 0 chr4 133298784 133298817 -69029530 + (TC)n Simple_repeat Simple_repeat 1 34 0 665 339 103 36 chr4 133299190 133300027 -69028320 - L2 LINE L2 -210 3062 2172 187 400 43 0 chr4 133300227 133300342 -69028005 - L2 LINE L2 -643 2671 2552 332 115 0 0 chr4 133300459 133300511 -69027836 - L1PA15 LINE L1 -10 6155 6104 1386 141 26 14 chr4 133300511 133300801 -69027546 + MER1B DNA MER1_type 1 329 0 5641 98 15 17 chr4 133300801 133301771 -69026576 - L1PA13 LINE L1 -52 6111 5145 636 259 82 56 chr4 133301906 133302138 -69026209 - MIR SINE MIR -10 252 15 383 56 19 0 chr4 133303146 133303200 -69025147 + (TA)n Simple_repeat Simple_repeat 2 56 0 183 80 0 0 chr4 133303400 133303425 -69024922 + (GA)n Simple_repeat Simple_repeat 1 25 0 919 169 6 23 chr4 133303953 133304125 -69024222 + AluSg/x SINE Alu 142 310 0 2114 183 27 5 chr4 133304262 133304704 -69023643 - L1MB3 LINE L1 -7 6176 5725 302 290 80 29 chr4 133304887 133305025 -69023322 - MIR SINE MIR -4 258 114 200 288 45 0 chr4 133305074 133305140 -69023207 + L2 LINE L2 3203 3271 -1 2203 113 0 7 chr4 133305523 133305832 -69022515 + AluSq SINE Alu 1 307 -6 31 68 0 0 chr4 133305950 133306009 -69022338 + AT_rich Low_complexity Low_complexity 1 59 0 36 53 0 0 chr4 133306361 133306418 -69021929 + AT_rich Low_complexity Low_complexity 1 57 0 361 339 0 0 chr4 133306567 133306676 -69021671 + L2 LINE L2 3204 3312 -1 1534 191 0 54 chr4 133306724 133307039 -69021308 + AluJo SINE Alu 1 298 -14 265 344 78 26 chr4 133307395 133307587 -69020760 - MIR SINE MIR -42 220 19 23 33 0 0 chr4 133307853 133307883 -69020464 + AT_rich Low_complexity Low_complexity 1 30 0 542 314 14 14 chr4 133308283 133308490 -69019857 - MIR SINE MIR -32 230 24 213 326 118 21 chr4 133308661 133308805 -69019542 + MIR3 SINE MIR 39 196 -12 360 213 12 0 chr4 133309225 133309305 -69019042 - L1MB7 LINE L1 -23 6161 6081 31 0 0 0 chr4 133309724 133309755 -69018592 + AT_rich Low_complexity Low_complexity 1 31 0 217 279 38 25 chr4 133310173 133310252 -69018095 - MER5B DNA MER1_type -98 80 1 1479 73 4 69 chr4 133311030 133311263 -69017084 + L1PA6 LINE L1 5934 6151 -3 2016 98 53 0 chr4 133311273 133311558 -69016789 + AluSp SINE Alu 1 300 -13 415 295 49 8 chr4 133312915 133313037 -69015310 + L2 LINE L2 3187 3313 0 29 0 0 0 chr4 133313825 133313854 -69014493 + AT_rich Low_complexity Low_complexity 1 29 0 2121 136 0 0 chr4 133314105 133314415 -69013932 - AluSx SINE Alu -2 310 1 2320 82 3 0 chr4 133314552 133314846 -69013501 - AluSp SINE Alu -16 297 3 14226 146 28 8 chr4 133316003 133318367 -69009980 - Tigger1 DNA MER2_type 0 2418 8 2566 198 38 1 chr4 133318657 133319351 -69008996 - L1MB7 LINE L1 -356 5828 5106 229 264 14 14 chr4 133319455 133319527 -69008820 + L2 LINE L2 3201 3272 0 321 26 0 0 chr4 133319643 133319681 -69008666 + (TA)n Simple_repeat Simple_repeat 2 39 0 2223 104 0 3 chr4 133319681 133319978 -69008369 - AluSq SINE Alu -17 296 1 1988 114 29 0 chr4 133320922 133321225 -69007122 - AluSx SINE Alu 0 311 1 2063 138 12 0 chr4 133321507 133321840 -69006507 - MER1B DNA MER1_type 0 337 1 200 111 22 44 chr4 133322100 133322145 -69006202 + T-rich Low_complexity Low_complexity 4 47 0 22 0 0 0 chr4 133323866 133323888 -69004459 + AT_rich Low_complexity Low_complexity 1 22 0 298 293 34 0 chr4 133325931 133326078 -69002269 + (TA)n Simple_repeat Simple_repeat 1 152 0 21 57 0 0 chr4 133326655 133326690 -69001657 + AT_rich Low_complexity Low_complexity 1 35 0 260 172 0 16 chr4 133327192 133327256 -69001091 + (TA)n Simple_repeat Simple_repeat 2 64 0 52 17 0 0 chr4 133327300 133327359 -69000988 + AT_rich Low_complexity Low_complexity 1 59 0 5665 85 5 10 chr4 133329753 133330533 -68997814 + L1PA8A LINE L1 5344 6119 -12 21 36 0 0 chr4 133331547 133331575 -68996772 + AT_rich Low_complexity Low_complexity 1 28 0 248 214 10 133 chr4 133331820 133331918 -68996429 + MIR3 SINE MIR 91 176 -32 2120 112 0 29 chr4 133334186 133334498 -68993849 - AluSx SINE Alu -9 303 1 180 77 0 0 chr4 133334857 133334883 -68993464 + (TAG)n Simple_repeat Simple_repeat 2 27 0 2320 98 3 0 chr4 133335566 133335863 -68992484 + AluSp SINE Alu 1 298 -15 26 0 0 0 chr4 133336296 133336322 -68992025 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr4 133337275 133337304 -68991043 + AT_rich Low_complexity Low_complexity 1 29 0 413 335 53 5 chr4 133337430 133337618 -68990729 - MIR SINE MIR -10 252 56 3622 202 33 26 chr4 133338400 133339320 -68989027 + L1MB1 LINE L1 4427 5374 -960 1939 98 42 18 chr4 133339320 133339605 -68988742 + AluY SINE Alu 1 292 -19 3622 202 33 26 chr4 133339605 133339866 -68988481 + L1MB1 LINE L1 5374 5632 -702 2147 178 31 20 chr4 133339870 133339941 -68988406 + L1MB1 LINE L1 5713 5782 -386 1173 181 13 25 chr4 133339941 133340179 -68988168 + MER46A DNA MER2_type 2 236 0 2147 178 31 20 chr4 133340179 133340557 -68987790 + L1MB1 LINE L1 5782 6167 -1 214 346 77 39 chr4 133341034 133341164 -68987183 - MIR SINE MIR -10 252 118 191 313 70 17 chr4 133341853 133341968 -68986379 + MIR SINE MIR 65 185 -77 253 164 36 0 chr4 133341969 133342024 -68986323 + L1MC4 LINE L1 6653 6709 -1333 21 57 0 0 chr4 133342039 133342074 -68986273 + AT_rich Low_complexity Low_complexity 1 35 0 218 282 0 0 chr4 133342241 133342378 -68985969 + (CA)n Simple_repeat Simple_repeat 1 137 0 423 132 0 0 chr4 133342613 133342681 -68985666 + (TA)n Simple_repeat Simple_repeat 1 68 0 621 260 64 43 chr4 133342873 133343108 -68985239 - MIR SINE MIR -14 248 9 21 57 0 0 chr4 133343337 133343372 -68984975 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr4 133344878 133344910 -68983437 + AT_rich Low_complexity Low_complexity 1 32 0 38 0 0 0 chr4 133345376 133345414 -68982933 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr4 133347225 133347247 -68981100 + AT_rich Low_complexity Low_complexity 1 22 0 744 288 33 12 chr4 133348836 133349079 -68979268 - MIR SINE MIR 0 262 15 2152 114 3 0 chr4 133350987 133351285 -68977062 + AluSq SINE Alu 1 299 -14 286 336 109 0 chr4 133353327 133353464 -68974883 + MIR SINE MIR 3 154 -108 543 309 138 53 chr4 133353533 133354064 -68974283 + L2 LINE L2 2316 2891 -423 461 269 57 21 chr4 133354075 133354216 -68974131 - MER63 DNA MER1_type -51 785 14 553 281 37 123 chr4 133354249 133354704 -68973643 + L2 LINE L2 2898 3313 0 21 82 0 0 chr4 133354767 133354816 -68973531 + AT_rich Low_complexity Low_complexity 1 49 0 1739 135 59 3 chr4 133355249 133355538 -68972809 - AluSx SINE Alu -7 305 1 380 367 41 18 chr4 133356044 133356213 -68972134 - MIR3 SINE MIR -26 182 10 21 0 0 0 chr4 133356217 133356238 -68972109 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr4 133356283 133356328 -68972019 + AT_rich Low_complexity Low_complexity 1 45 0 2700 104 3 0 chr4 133356653 133357027 -68971320 + THE1C LTR MaLR 1 375 0 8988 132 81 3 chr4 133357031 133358493 -68969854 + THE1C-int LTR MaLR 5 1580 0 2227 133 5 29 chr4 133358493 133358877 -68969470 + THE1C LTR MaLR 1 375 0 421 253 171 18 chr4 133358941 133359111 -68969236 - L2 LINE L2 -9 3304 3109 503 300 148 17 chr4 133359157 133359447 -68968900 - L2 LINE L2 -780 2534 2207 256 212 61 0 chr4 133359488 133359554 -68968793 - MIR SINE MIR -62 200 131 24 0 0 0 chr4 133359762 133359786 -68968561 + AT_rich Low_complexity Low_complexity 1 24 0 32 0 0 0 chr4 133361491 133361523 -68966824 + AT_rich Low_complexity Low_complexity 1 32 0 403 168 21 11 chr4 133361523 133361618 -68966729 - L1MB3 LINE L1 -7 6176 6081 2167 110 3 0 chr4 133362340 133362632 -68965715 + AluSq SINE Alu 1 293 -20 214 200 0 22 chr4 133362986 133363031 -68965316 + (CATA)n Simple_repeat Simple_repeat 3 46 0 23 33 0 0 chr4 133363656 133363686 -68964661 + AT_rich Low_complexity Low_complexity 1 30 0 211 302 125 0 chr4 133363864 133363960 -68964387 + MIR SINE MIR 97 204 -58 280 333 14 21 chr4 133364061 133364205 -68964142 - L2 LINE L2 -929 2385 2243 1505 61 0 0 chr4 133364301 133364497 -68963850 + L1PA5 LINE L1 5959 6154 0 341 242 176 0 chr4 133365914 133366005 -68962342 - MIR SINE MIR -30 232 126 542 326 80 13 chr4 133366561 133366785 -68961562 + MIR SINE MIR 24 262 0 22 56 0 0 chr4 133367122 133367158 -68961189 + AT_rich Low_complexity Low_complexity 1 36 0 194 237 34 34 chr4 133367940 133367999 -68960348 + MIR SINE MIR 204 262 0 282 145 116 14 chr4 133369670 133369739 -68958608 - MER41B LTR ERV1 -81 554 479 1788 175 117 17 chr4 133370013 133370424 -68957923 - LTR47A LTR ERVL 0 452 1 348 200 0 0 chr4 133371630 133371700 -68956647 - Tigger1 DNA MER2_type -2348 70 1 22 35 0 0 chr4 133371773 133371802 -68956545 + AT_rich Low_complexity Low_complexity 1 29 0 1965 84 12 81 chr4 133372033 133372353 -68955994 + AluY SINE Alu 1 298 -13 23 33 0 0 chr4 133373413 133373443 -68954904 + AT_rich Low_complexity Low_complexity 1 30 0 218 271 56 56 chr4 133373904 133374011 -68954336 + L3 LINE CR1 1470 1576 -1 189 0 0 0 chr4 133376935 133376956 -68951391 + (A)n Simple_repeat Simple_repeat 1 21 0 230 143 0 0 chr4 133380645 133380687 -68947660 + L1MC4 LINE L1 6662 6703 -1339 1571 179 32 55 chr4 133382510 133382857 -68945490 + MSTD LTR MaLR 56 394 -2 286 398 45 5 chr4 133383917 133384138 -68944209 + MIR SINE MIR 15 244 -18 1758 127 83 24 chr4 133384232 133384571 -68943776 - MER46B DNA MER2_type -1 235 2 1126 208 9 0 chr4 133384887 133385108 -68943239 - MER58A DNA MER1_type -1 223 1 1246 52 0 0 chr4 133385238 133385393 -68942954 - L1PA5 LINE L1 -159 5995 5841 188 310 35 0 chr4 133385667 133385725 -68942622 - MIR SINE MIR -85 123 64 226 197 51 51 chr4 133387079 133387257 -68941090 + (TA)n Simple_repeat Simple_repeat 2 179 0 2428 59 0 10 chr4 133387335 133387638 -68940709 - AluY SINE Alu -11 300 1 196 286 74 0 chr4 133387794 133387869 -68940478 + MIR SINE MIR 38 116 -107 1942 126 48 0 chr4 133388444 133388737 -68939610 + AluSq SINE Alu 1 307 -6 33 43 0 0 chr4 133388985 133389032 -68939315 + AT_rich Low_complexity Low_complexity 1 47 0 13478 154 9 8 chr4 133389756 133391998 -68936349 - Tigger1 DNA MER2_type -175 2243 1 1198 84 18 114 chr4 133392330 133392557 -68935790 + AluY SINE Alu 1 205 -106 29 0 0 0 chr4 133393571 133393600 -68934747 + AT_rich Low_complexity Low_complexity 1 29 0 990 299 104 20 chr4 133393600 133394051 -68934296 - MLT1H1 LTR MaLR -65 490 2 1287 295 121 45 chr4 133394617 133394956 -68933391 - L2 LINE L2 -420 2894 2582 1635 35 0 5 chr4 133394956 133395158 -68933189 + L1PA5 LINE L1 5954 6154 0 1287 295 121 45 chr4 133395158 133395488 -68932859 - L2 LINE L2 -732 2582 2149 2129 111 13 91 chr4 133395488 133395819 -68932528 - THE1B LTR MaLR 0 364 67 2143 117 0 0 chr4 133395819 133396109 -68932238 - AluSx SINE Alu -22 290 1 2129 111 13 91 chr4 133396109 133396172 -68932175 - THE1B LTR MaLR -297 67 1 1287 295 121 45 chr4 133396172 133396318 -68932029 - L2 LINE L2 -1165 2149 2016 384 335 98 9 chr4 133396704 133396919 -68931428 + MIR SINE MIR 18 251 -11 2293 77 0 26 chr4 133398281 133398594 -68929753 - AluY SINE Alu -6 305 1 194 344 99 15 chr4 133398768 133398899 -68929448 + MIR SINE MIR 40 181 -81 210 244 0 0 chr4 133398899 133398940 -68929407 - L2 LINE L2 -13 3259 3219 215 409 92 11 chr4 133399508 133399536 -68928811 + L2 LINE L2 2156 2180 -1134 270 0 0 0 chr4 133399536 133399566 -68928781 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 306 0 0 0 chr4 133399565 133399599 -68928748 + (GA)n Simple_repeat Simple_repeat 1 34 0 215 409 92 11 chr4 133399566 133400047 -68928300 + L2 LINE L2 2180 2671 -643 190 381 48 37 chr4 133400403 133400592 -68927755 - L2 LINE L2 -509 2805 2615 672 23 11 0 chr4 133400957 133401045 -68927302 + L1PA6 LINE L1 6064 6152 -2 255 190 13 51 chr4 133401451 133401530 -68926817 + A-rich Low_complexity Low_complexity 2 77 0 320 267 75 17 chr4 133402653 133402773 -68925574 - L2 LINE L2 -4 3309 3183 4086 94 5 0 chr4 133404707 133405284 -68923063 + L1PA14 LINE L1 5580 6159 -2 26 0 0 0 chr4 133405492 133405518 -68922829 + AT_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chr4 133407067 133407113 -68921234 + AT_rich Low_complexity Low_complexity 1 46 0 25 51 0 0 chr4 133407928 133407967 -68920380 + AT_rich Low_complexity Low_complexity 1 39 0 312 27 0 0 chr4 133408410 133408447 -68919900 + (TG)n Simple_repeat Simple_repeat 1 37 0 193 208 19 38 chr4 133409303 133409356 -68918991 + MIR SINE MIR 113 164 -98 181 217 43 22 chr4 133409744 133409790 -68918557 + MIR SINE MIR 152 198 -64 358 311 65 85 chr4 133409891 133410139 -68918208 + MIR SINE MIR 20 262 0 191 146 24 0 chr4 133410631 133410672 -68917675 + (CTA)n Simple_repeat Simple_repeat 1 42 0 392 274 65 36 chr4 133410681 133410715 -68917632 - MIR SINE MIR -12 250 218 2073 123 3 3 chr4 133410715 133411015 -68917332 - AluSq SINE Alu -13 300 1 392 274 65 36 chr4 133411015 133411148 -68917199 - MIR SINE MIR -44 218 78 2232 102 3 0 chr4 133411847 133412141 -68916206 - AluSc SINE Alu -14 295 1 33 66 0 0 chr4 133414529 133414590 -68913757 + AT_rich Low_complexity Low_complexity 1 61 0 204 40 0 0 chr4 133415795 133415820 -68912527 + (TA)n Simple_repeat Simple_repeat 2 26 0 363 188 49 20 chr4 133416125 133416233 -68912114 - L1ME4a LINE L1 -3 6093 1243 335 285 112 33 chr4 133416249 133416463 -68911884 - L1ME LINE L1 -309 5812 5582 203 315 0 0 chr4 133416715 133416769 -68911578 + L2 LINE L2 2444 2497 -817 2082 121 7 0 chr4 133416777 133417083 -68911264 - AluSg SINE Alu -2 308 1 937 293 140 19 chr4 133417084 133417641 -68910706 + L2 LINE L2 2688 3309 -4 268 180 0 0 chr4 133419083 133419133 -68909214 - L1MB7 LINE L1 -24 6160 6111 23 33 0 0 chr4 133420551 133420581 -68907766 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 133420838 133420860 -68907487 + AT_rich Low_complexity Low_complexity 1 22 0 867 218 96 11 chr4 133421163 133421351 -68906996 + MER20 DNA MER1_type 1 204 -15 180 0 0 0 chr4 133422192 133422212 -68906135 + (T)n Simple_repeat Simple_repeat 1 20 0 191 152 22 0 chr4 133422258 133422304 -68906043 + CT-rich Low_complexity Low_complexity 2 48 0 387 73 0 0 chr4 133422304 133422359 -68905988 + (CA)n Simple_repeat Simple_repeat 2 56 0 315 49 0 0 chr4 133422712 133422753 -68905594 + (CA)n Simple_repeat Simple_repeat 2 42 0 1718 163 0 3 chr4 133423211 133423494 -68904853 - Tigger3b DNA MER2_type 0 1231 950 1204 138 5 5 chr4 133423523 133423712 -68904635 - AluJb SINE Alu -33 279 91 4694 119 63 18 chr4 133423716 133424531 -68903816 - Tigger3b DNA MER2_type -305 926 76 512 343 137 30 chr4 133426952 133427747 -68900600 - L2 LINE L2 -534 2780 1901 29 0 0 0 chr4 133428135 133428164 -68900183 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 133428188 133428217 -68900130 + AT_rich Low_complexity Low_complexity 1 29 0 2281 52 0 39 chr4 133428701 133429006 -68899341 - AluY SINE Alu -18 293 1 863 328 62 15 chr4 133429096 133429486 -68898861 - L2 LINE L2 -30 3283 2876 180 0 0 0 chr4 133429729 133429749 -68898598 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2153 114 0 7 chr4 133432234 133432540 -68895807 + AluSq SINE Alu 1 304 -9 359 362 52 17 chr4 133433475 133433707 -68894640 - L2 LINE L2 -252 3061 2822 212 303 141 0 chr4 133434959 133435058 -68893289 - MIR SINE MIR -98 164 52 2468 117 19 6 chr4 133435531 133435890 -68892457 - THE1B LTR MaLR 0 364 1 230 324 186 15 chr4 133435980 133436115 -68892232 - MIR SINE MIR -74 188 31 344 284 10 39 chr4 133436344 133436446 -68891901 + MIR SINE MIR 140 238 -24 441 97 67 0 chr4 133437578 133437712 -68890635 + (TG)n Simple_repeat Simple_repeat 2 144 0 788 303 69 25 chr4 133439155 133439516 -68888831 + MLT1I LTR MaLR 60 409 0 21 0 0 0 chr4 133439682 133439703 -68888644 + AT_rich Low_complexity Low_complexity 1 21 0 325 212 12 0 chr4 133440290 133440375 -68887972 + (TA)n Simple_repeat Simple_repeat 1 86 0 2602 110 5 0 chr4 133442117 133442490 -68885857 - THE1C LTR MaLR 0 375 1 237 231 289 0 chr4 133442879 133442983 -68885364 - L2 LINE L2 0 3272 3139 2604 180 20 12 chr4 133443055 133443544 -68884803 - MLT1D LTR MaLR -8 497 5 560 285 35 6 chr4 133446164 133446336 -68882011 - MER5B DNA MER1_type 0 178 2 13849 150 28 18 chr4 133446844 133449070 -68879277 - Tigger1 DNA MER2_type 0 2418 167 1728 162 149 11 chr4 133449070 133449446 -68878901 - MSTA LTR MaLR 0 428 1 13849 150 28 18 chr4 133449446 133449615 -68878732 - Tigger1 DNA MER2_type -2251 167 1 523 322 86 20 chr4 133450153 133450398 -68877949 + MIR SINE MIR 1 261 -1 25 0 0 0 chr4 133450615 133450640 -68877707 + AT_rich Low_complexity Low_complexity 1 25 0 223 196 0 22 chr4 133451705 133451751 -68876596 + CT-rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr4 133453293 133453316 -68875031 + AT_rich Low_complexity Low_complexity 1 23 0 225 233 30 98 chr4 133453317 133453450 -68874897 - L1ME3A LINE L1 -31 6139 6016 268 247 86 0 chr4 133453581 133453674 -68874673 - L1ME3A LINE L1 -896 5250 5150 3897 35 7 5 chr4 133453679 133454272 -68874075 - L1P2 LINE L1 -671 5484 4889 937 268 87 66 chr4 133454295 133455208 -68873139 - L1ME3A LINE L1 -1384 4762 3869 264 30 0 0 chr4 133455208 133455241 -68873106 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1876 191 172 71 chr4 133455245 133455995 -68872352 + LTR1B LTR ERV1 1 826 0 937 268 87 66 chr4 133455995 133457185 -68871162 - L1ME3A LINE L1 -2279 3867 2609 881 134 0 15 chr4 133457238 133457396 -68870951 + FLAM_C SINE Alu 2 133 0 907 318 79 48 chr4 133457477 133458456 -68869891 + L2 LINE L2 2312 3312 -1 180 273 0 0 chr4 133459002 133459046 -68869301 + MIR SINE MIR 171 214 -48 36 0 0 0 chr4 133459067 133459103 -68869244 + AT_rich Low_complexity Low_complexity 1 36 0 270 245 84 15 chr4 133459197 133459330 -68869017 + L1P5 LINE L1 5467 5606 -559 32 26 0 0 chr4 133461701 133461740 -68866607 + AT_rich Low_complexity Low_complexity 1 39 0 4349 273 84 6 chr4 133461801 133462945 -68865402 + L1 LINE L1 3721 4953 -1193 599 275 20 0 chr4 133462954 133463103 -68865244 + MLT1A2 LTR MaLR 220 371 -3 25 0 0 0 chr4 133463541 133463566 -68864781 + AT_rich Low_complexity Low_complexity 1 25 0 270 81 0 0 chr4 133463792 133463829 -68864518 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 1771 162 0 14 chr4 133463829 133464119 -68864228 - AluJb SINE Alu -26 286 1 6546 152 13 39 chr4 133464205 133465897 -68862450 - L1MA2 LINE L1 0 6304 4669 500 224 0 0 chr4 133465892 133466008 -68862339 + L1 LINE L1 2269 2384 -3762 * 915 198 18 18 chr4 133466000 133466222 -68862125 - L1MA2 LINE L1 -3522 2624 2403 544 303 71 32 chr4 133466997 133467277 -68861070 - MLT1H1 LTR MaLR -207 348 68 1206 222 57 92 chr4 133467850 133468373 -68859974 + MLT1D LTR MaLR 1 505 0 1415 224 32 35 chr4 133468512 133468883 -68859464 - MLT1A2 LTR MaLR -4 370 1 1417 211 68 0 chr4 133469031 133469353 -68858994 - MER2 DNA MER2_type 0 344 1 401 299 45 8 chr4 133469497 133469631 -68858716 + MIR SINE MIR 86 224 -38 2258 94 0 25 chr4 133470358 133470676 -68857671 + AluSp SINE Alu 1 310 -3 441 314 26 86 chr4 133470954 133471371 -68856976 + L1M3d LINE L1 413 804 -5499 648 168 0 0 chr4 133471486 133471593 -68856754 + AluSp/q SINE Alu 205 311 -2 2677 257 53 44 chr4 133471640 133473378 -68854969 + L1M3d LINE L1 804 2509 -3873 1425 183 53 0 chr4 133473391 133473692 -68854655 + L1MB2 LINE L1 5855 6171 0 305 353 105 42 chr4 133473941 133474131 -68854216 + MIR SINE MIR 18 219 -43 225 94 0 0 chr4 133475239 133475271 -68853076 + (TA)n Simple_repeat Simple_repeat 1 32 0 348 362 87 24 chr4 133475298 133475585 -68852762 - L2 LINE L2 0 3313 3009 1173 246 152 73 chr4 133475690 133476040 -68852307 + MLT1E3 LTR MaLR 1 414 -210 345 62 0 0 chr4 133476040 133476088 -68852259 + (CA)n Simple_repeat Simple_repeat 1 48 0 1173 246 152 73 chr4 133476088 133476315 -68852032 + MLT1E3 LTR MaLR 414 622 -2 279 0 0 0 chr4 133476576 133476607 -68851740 + (CA)n Simple_repeat Simple_repeat 2 32 0 248 300 40 0 chr4 133476845 133476945 -68851402 + L1MC5 LINE L1 7342 7445 -516 1879 135 31 55 chr4 133476999 133477383 -68850964 + THE1C LTR MaLR 1 375 0 712 234 96 18 chr4 133477560 133477726 -68850621 - MLT1A1 LTR MaLR 0 365 187 1753 145 0 77 chr4 133477726 133478099 -68850248 - MER4A LTR ERV1 0 664 262 352 118 43 118 chr4 133478099 133478192 -68850155 - MER4A LTR ERV1 -565 99 14 555 128 12 0 chr4 133478254 133478340 -68850007 + MLT1A1 LTR MaLR 267 353 -12 383 335 59 6 chr4 133478537 133478707 -68849640 + MIR SINE MIR 84 262 0 1843 219 132 30 chr4 133478884 133479489 -68848858 - LTR28 LTR ERV1 0 1020 289 230 184 0 0 chr4 133479528 133479566 -68848781 - MER61B LTR ERV1 -286 139 102 * 782 194 22 33 chr4 133479543 133479723 -68848624 - LTR28 LTR ERV1 -842 178 1 26 64 0 0 chr4 133479835 133479882 -68848465 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr4 133480055 133480084 -68848263 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr4 133480090 133480126 -68848221 + AT_rich Low_complexity Low_complexity 1 36 0 265 163 0 58 chr4 133482386 133482472 -68845875 - LTR66 LTR ERVL -136 474 394 1823 290 88 21 chr4 133483406 133484222 -68844125 - L2 LINE L2 -8 3305 2409 1827 193 15 47 chr4 133484222 133484627 -68843720 - MSTD LTR MaLR -4 392 1 1823 290 88 21 chr4 133484627 133484688 -68843659 - L2 LINE L2 -904 2409 2354 2823 3 0 0 chr4 133485708 133486012 -68842335 + AluYa8 SINE Alu 1 304 -6 26 64 0 0 chr4 133486467 133486514 -68841833 + AT_rich Low_complexity Low_complexity 1 47 0 650 211 135 0 chr4 133486555 133486688 -68841659 - AluJo SINE Alu -152 160 10 1291 221 57 46 chr4 133487100 133487297 -68841050 - MSTD LTR MaLR -25 371 167 1995 151 3 3 chr4 133487297 133487608 -68840739 - AluSx SINE Alu -1 311 1 1291 221 57 46 chr4 133487608 133487777 -68840570 - MSTD LTR MaLR -229 167 1 5734 261 25 31 chr4 133487777 133488944 -68839403 - THE1C-int LTR MaLR 0 1735 577 2758 104 0 3 chr4 133488944 133489320 -68839027 - THE1C LTR MaLR 0 375 1 5734 261 25 31 chr4 133489320 133489650 -68838697 - THE1C-int LTR MaLR -1158 577 247 286 190 30 20 chr4 133489650 133489750 -68838597 + (TA)n Simple_repeat Simple_repeat 1 101 0 1735 154 18 11 chr4 133489752 133490038 -68838309 - AluJo SINE Alu -24 288 1 1095 226 28 8 chr4 133490038 133490290 -68838057 - MSTD-int LTR MaLR -1477 258 2 1785 212 20 8 chr4 133490292 133490683 -68837664 - MSTD LTR MaLR 0 396 1 183 239 0 0 chr4 133491686 133491732 -68836615 + CT-rich Low_complexity Low_complexity 3 48 0 723 177 11 11 chr4 133491746 133491831 -68836516 + CT-rich Low_complexity Low_complexity 3 87 -90 2778 183 25 81 chr4 133491831 133492489 -68835858 + LTR8 LTR ERV1 3 618 -73 2240 82 3 13 chr4 133492489 133492792 -68835555 - AluY SINE Alu -9 302 3 2778 183 25 81 chr4 133492792 133492861 -68835486 + LTR8 LTR ERV1 618 689 -2 723 177 11 11 chr4 133492861 133492950 -68835397 + CT-rich Low_complexity Low_complexity 86 177 0 1596 214 35 3 chr4 133493429 133493803 -68834544 - L1 LINE L1 -927 6638 6253 3488 53 0 7 chr4 133493805 133494256 -68834091 - LTR7 LTR ERV1 -2 448 1 2435 82 45 13 chr4 133494256 133494636 -68833711 - HERVH LTR ERV1 0 7713 7322 1384 108 38 0 chr4 133494634 133494846 -68833501 - HERVH LTR ERV1 -1894 5819 5600 * 4330 142 1 1 chr4 133494847 133495509 -68832838 - HERVH LTR ERV1 -2564 5149 4488 3423 107 0 6 chr4 133495511 133496016 -68832331 - HERVH LTR ERV1 -3720 3993 3492 * 20426 92 60 26 chr4 133495994 133499191 -68829156 - HERVH LTR ERV1 -4405 3308 1 3713 33 0 2 chr4 133499193 133499642 -68828705 - LTR7 LTR ERV1 -2 448 1 441 110 18 101 chr4 133499642 133499693 -68828654 - L1 LINE L1 -1308 6257 6218 2277 97 0 0 chr4 133499693 133499981 -68828366 - AluSg SINE Alu -22 288 1 441 110 18 101 chr4 133499981 133500038 -68828309 - L1 LINE L1 -1347 6218 6158 7623 179 8 44 chr4 133500110 133501817 -68826530 - L1 LINE L1 -1394 6171 4526 1491 183 23 46 chr4 133501817 133502123 -68826224 + AluJo SINE Alu 1 299 -13 7623 179 8 44 chr4 133502123 133502170 -68826177 - L1 LINE L1 -3039 4526 4479 * 8220 66 13 0 chr4 133502161 133503239 -68825108 - L1PA5 LINE L1 -1331 4815 3724 7148 54 0 6 chr4 133503241 133504566 -68823781 + L1PA5 LINE L1 4832 6153 -1 1383 250 20 5 chr4 133504574 133504966 -68823381 - L1 LINE L1 -3089 4476 4079 * 2234 186 11 0 chr4 133504962 133505338 -68823009 - L1 LINE L1 -5823 1742 1363 671 204 6 108 chr4 133505338 133505630 -68822717 - LTR21B LTR ERV1 0 438 118 5955 205 52 12 chr4 133505740 133507038 -68821309 - L1 LINE L1 -6198 1367 5 210 305 0 17 chr4 133507318 133507377 -68820970 + L2 LINE L2 3206 3263 -9 4386 105 60 8 chr4 133507389 133508121 -68820226 + L1MA3 LINE L1 5536 6305 0 27 29 0 0 chr4 133509123 133509157 -68819190 + AT_rich Low_complexity Low_complexity 1 34 0 2202 94 50 0 chr4 133509235 133509533 -68818814 + AluSp SINE Alu 1 313 0 32 0 0 0 chr4 133510482 133510514 -68817833 + AT_rich Low_complexity Low_complexity 1 32 0 191 125 25 0 chr4 133510708 133510748 -68817599 + (CA)n Simple_repeat Simple_repeat 2 42 0 251 304 92 46 chr4 133510788 133511028 -68817319 + L1MC4a LINE L1 5678 5928 -1880 5076 167 47 35 chr4 133511190 133511429 -68816918 + L1MC1 LINE L1 5171 5406 -927 1537 207 65 45 chr4 133511429 133511811 -68816536 + MLT1B LTR MaLR 1 390 0 5076 167 47 35 chr4 133511811 133512503 -68815844 + L1MC1 LINE L1 5406 6088 -245 2083 92 15 0 chr4 133512503 133512776 -68815571 + AluSx SINE Alu 3 279 -33 198 71 0 0 chr4 133512780 133512808 -68815539 + (CATA)n Simple_repeat Simple_repeat 2 29 0 5076 167 47 35 chr4 133512808 133513019 -68815328 + L1MC1 LINE L1 6090 6333 0 22 35 0 0 chr4 133513424 133513453 -68814894 + AT_rich Low_complexity Low_complexity 1 29 0 188 0 74 0 chr4 133514833 133514860 -68813487 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 184 157 43 29 chr4 133515027 133515167 -68813180 + (TA)n Simple_repeat Simple_repeat 1 142 0 945 195 56 15 chr4 133516073 133516340 -68812007 + L1MC5 LINE L1 7607 7884 -77 279 79 0 0 chr4 133516436 133516474 -68811873 + (CA)n Simple_repeat Simple_repeat 1 38 0 327 188 40 40 chr4 133517501 133517602 -68810745 - MLT1J LTR MaLR -33 478 378 196 225 25 0 chr4 133517780 133517820 -68810527 - MIR SINE MIR -21 241 201 287 275 84 76 chr4 133517860 133517991 -68810356 - MLT1J LTR MaLR -369 142 11 1002 83 62 0 chr4 133519644 133519788 -68808559 - L1PA11 LINE L1 -4 6170 6018 726 201 0 0 chr4 133520092 133520231 -68808116 - FLAM_C SINE Alu -4 139 1 21 36 0 0 chr4 133520604 133520632 -68807715 + AT_rich Low_complexity Low_complexity 1 28 0 1903 91 58 25 chr4 133521111 133521408 -68806939 + AluY SINE Alu 1 306 0 2003 124 21 0 chr4 133521589 133521880 -68806467 - AluSx SINE Alu -14 298 2 2090 155 91 5 chr4 133522181 133522473 -68805874 + MSTA LTR MaLR 1 337 -91 3137 131 60 2 chr4 133522473 133522971 -68805376 + MER1A DNA MER1_type 1 527 0 2090 155 91 5 chr4 133522971 133523072 -68805275 + MSTA LTR MaLR 337 428 0 329 233 100 15 chr4 133523460 133523610 -68804737 - L2 LINE L2 -4 3309 3177 297 0 0 0 chr4 133523625 133523658 -68804689 + (CA)n Simple_repeat Simple_repeat 1 33 0 28 0 0 0 chr4 133524180 133524208 -68804139 + AT_rich Low_complexity Low_complexity 1 28 0 377 244 12 0 chr4 133525185 133525267 -68803080 + MIR SINE MIR 74 156 -106 264 240 8 78 chr4 133525918 133526047 -68802300 + MER112 DNA MER1_type 20 139 -121 2140 113 3 44 chr4 133526063 133526382 -68801965 - AluSx SINE Alu -6 306 1 1852 144 114 30 chr4 133527162 133527557 -68800790 + MSTA LTR MaLR 1 428 0 22 35 0 0 chr4 133527641 133527670 -68800677 + AT_rich Low_complexity Low_complexity 1 29 0 1978 137 0 3 chr4 133527982 133528288 -68800059 - AluSx SINE Alu 0 305 1 517 269 25 25 chr4 133530115 133530275 -68798072 + L1ME3A LINE L1 6007 6166 -4 21 0 0 0 chr4 133530552 133530573 -68797774 + AT_rich Low_complexity Low_complexity 1 21 0 247 151 19 0 chr4 133531178 133531231 -68797116 + HsTC2 DNA Tc2 22 75 -1823 907 162 31 92 chr4 133531493 133531722 -68796625 + MER20 DNA MER1_type 1 215 -4 198 358 84 39 chr4 133531804 133531983 -68796364 - L2 LINE L2 -1 3312 3126 1917 125 7 7 chr4 133532045 133532332 -68796015 + AluSc SINE Alu 1 287 -22 327 270 11 11 chr4 133532439 133532528 -68795819 - MLT1J LTR MaLR -193 318 230 2917 125 24 146 chr4 133533795 133533842 -68794505 + L1PA14 LINE L1 4665 4716 -1430 2473 57 0 0 chr4 133533842 133534143 -68794204 + AluY SINE Alu 1 301 -10 2917 125 24 146 chr4 133534143 133534857 -68793490 + L1PA14 LINE L1 4716 5333 -813 1386 139 26 13 chr4 133534857 133535087 -68793260 + AluSx SINE Alu 3 235 -77 5140 106 24 3 chr4 133535089 133535855 -68792492 + L1PA14 LINE L1 5380 6161 0 2016 81 0 8 chr4 133536418 133536677 -68791670 - AluSp SINE Alu -8 305 49 651 328 79 53 chr4 133536715 133537169 -68791178 + MLT1H LTR MaLR 84 549 0 1046 269 34 3 chr4 133537500 133537794 -68790553 - MER58B DNA MER1_type -28 313 11 23 0 0 0 chr4 133537846 133537869 -68790478 + AT_rich Low_complexity Low_complexity 1 23 0 418 294 172 0 chr4 133538251 133538414 -68789933 + MLT1H LTR MaLR 359 549 0 607 214 112 102 chr4 133538813 133539205 -68789142 + MER93a LTR ERV1 5 400 -2 37 86 0 0 chr4 133540424 133540505 -68787842 + AT_rich Low_complexity Low_complexity 1 81 0 275 261 60 45 chr4 133541088 133541222 -68787125 + HAL1 LINE L1 2328 2463 -44 22 0 0 0 chr4 133541242 133541264 -68787083 + AT_rich Low_complexity Low_complexity 1 22 0 2594 118 33 5 chr4 133543223 133543645 -68784702 - MER57B LTR ERV1 0 434 1 2114 111 0 10 chr4 133544137 133544434 -68783913 - AluY SINE Alu -13 298 5 3866 128 137 106 chr4 133544907 133546239 -68782108 - pTR5 LTR ERV1 0 2438 743 228 122 0 0 chr4 133546656 133546697 -68781650 + (TG)n Simple_repeat Simple_repeat 2 42 0 27 29 0 0 chr4 133548748 133548782 -68779565 + AT_rich Low_complexity Low_complexity 1 34 0 29 60 0 0 chr4 133548804 133548854 -68779493 + AT_rich Low_complexity Low_complexity 1 50 0 335 302 70 17 chr4 133549222 133549394 -68778953 + MLT1J2 LTR MaLR 55 235 -215 197 370 19 9 chr4 133549593 133549701 -68778646 - L2 LINE L2 -769 2545 2437 2466 209 28 17 chr4 133550936 133551473 -68776874 - MER67A LTR ERV1 0 543 1 26 50 0 0 chr4 133551679 133551719 -68776628 + AT_rich Low_complexity Low_complexity 1 40 0 189 209 23 0 chr4 133552637 133552680 -68775667 - L2 LINE L2 -9 3304 3261 209 231 0 19 chr4 133554165 133554217 -68774130 + A-rich Low_complexity Low_complexity 3 53 0 211 169 34 34 chr4 133554413 133554472 -68773875 + T-rich Low_complexity Low_complexity 3 61 0 2090 98 7 7 chr4 133554531 133554817 -68773530 + AluSc SINE Alu 1 286 -23 2366 90 0 3 chr4 133555204 133555516 -68772831 + AluY SINE Alu 1 311 0 1208 187 44 102 chr4 133555577 133556298 -68772049 + LTR48 LTR ERV1 1 707 0 783 217 45 36 chr4 133556756 133556977 -68771370 - LTR48B LTR ERV1 -2 642 420 3780 131 16 40 chr4 133557044 133557724 -68770623 - MER4A LTR ERV1 0 664 1 477 281 8 8 chr4 133558173 133558294 -68770053 - LTR28 LTR ERV1 0 1020 900 1521 226 86 91 chr4 133558373 133559164 -68769183 - LTR1B LTR ERV1 -81 745 1 215 254 16 48 chr4 133561057 133561120 -68767227 - MIR SINE MIR -84 178 118 739 270 112 81 chr4 133561143 133561190 -68767157 - LTR16A LTR ERVL -28 422 378 2138 129 7 0 chr4 133561190 133561500 -68766847 + AluSx SINE Alu 1 312 0 739 270 112 81 chr4 133561500 133561837 -68766510 - LTR16A LTR ERVL -72 378 26 2173 169 54 17 chr4 133561904 133562313 -68766034 + MSTB LTR MaLR 1 424 -2 838 222 131 16 chr4 133562875 133563127 -68765220 - MER110A LTR ERV1 -117 351 71 365 336 110 6 chr4 133563160 133563359 -68764988 + MIR SINE MIR 17 237 -25 368 288 43 65 chr4 133563849 133564033 -68764314 - L2 LINE L2 -1 3312 3133 213 39 0 0 chr4 133564061 133564087 -68764260 + (ATTAG)n Simple_repeat Simple_repeat 2 27 0 222 416 38 0 chr4 133564916 133565101 -68763246 + L3 LINE CR1 1219 1410 -167 2173 89 3 10 chr4 133565539 133565843 -68762504 - AluY SINE Alu -9 302 1 489 286 74 17 chr4 133566052 133566227 -68762120 + MIR SINE MIR 48 232 -30 35 0 0 0 chr4 133566249 133566284 -68762063 + AT_rich Low_complexity Low_complexity 1 35 0 598 344 90 56 chr4 133566310 133566812 -68761535 - L2 LINE L2 -313 3000 2472 21 0 0 0 chr4 133567738 133567759 -68760588 + AT_rich Low_complexity Low_complexity 1 21 0 3585 217 40 8 chr4 133568419 133569160 -68759187 - L1MD1 LINE L1 0 6242 5469 2371 94 0 0 chr4 133569160 133569457 -68758890 - AluSg SINE Alu -13 297 1 3585 217 40 8 chr4 133569457 133569564 -68758783 - L1MD1 LINE L1 -773 5469 5367 2147 203 22 22 chr4 133569564 133570008 -68758339 - MLT2B2 LTR ERVL 0 515 72 3894 139 21 66 chr4 133570011 133570833 -68757514 + LTR1 LTR ERV1 1 785 0 419 126 138 35 chr4 133570980 133571067 -68757280 + HUERS-P2 LTR ERV1 213 308 -2780 1289 114 0 25 chr4 133571273 133571475 -68756872 + AluSg/x SINE Alu 114 310 0 201 242 253 81 chr4 133571475 133571574 -68756773 + MER5A DNA MER1_type 74 189 0 24 0 0 0 chr4 133574310 133574334 -68754013 + AT_rich Low_complexity Low_complexity 1 24 0 1818 94 31 69 chr4 133574741 133575060 -68753287 + AluY SINE Alu 4 310 -1 3809 125 92 15 chr4 133576389 133577118 -68751229 - LTR1 LTR ERV1 0 785 1 232 200 33 67 chr4 133577458 133577518 -68750829 + L2 LINE L2 3250 3307 -6 211 357 64 38 chr4 133578523 133578680 -68749667 + MIR SINE MIR 68 228 -34 21 57 0 0 chr4 133578824 133578859 -68749488 + AT_rich Low_complexity Low_complexity 1 35 0 1960 129 7 0 chr4 133579198 133579503 -68748844 + AluSg SINE Alu 1 307 0 629 303 104 47 chr4 133579504 133579890 -68748457 - L2 LINE L2 -19 3294 2887 1311 192 163 29 chr4 133579912 133580261 -68748086 - MSTD LTR MaLR 0 396 1 2782 276 152 43 chr4 133580261 133580956 -68747391 - MSTD-int LTR MaLR 0 1735 884 1704 204 60 22 chr4 133580956 133581372 -68746975 - MSTB1 LTR MaLR 0 432 1 2782 276 152 43 chr4 133581372 133581736 -68746611 - MSTD-int LTR MaLR -851 884 561 5056 193 60 33 chr4 133581739 133581980 -68746367 + L1MC3 LINE L1 6520 6753 -1032 2259 112 7 0 chr4 133581980 133582283 -68746064 + AluSg SINE Alu 5 309 -1 5056 193 60 33 chr4 133582283 133582401 -68745946 + L1MC3 LINE L1 6753 6866 -919 432 0 0 0 chr4 133582401 133582449 -68745898 + (CA)n Simple_repeat Simple_repeat 2 49 0 5056 193 60 33 chr4 133582449 133583319 -68745028 + L1MC3 LINE L1 6866 7783 -2 294 319 27 54 chr4 133585301 133585395 -68742952 - MIR SINE MIR -60 202 114 3343 68 18 5 chr4 133585395 133585833 -68742514 - MLT2A1 LTR ERVL 0 444 1 294 319 27 54 chr4 133585833 133585923 -68742424 - MIR SINE MIR -148 114 23 354 255 0 32 chr4 133586104 133586198 -68742149 - L2 LINE L2 -1 3312 3222 315 358 22 17 chr4 133586424 133586603 -68741744 + MIR SINE MIR 2 181 -81 2111 240 62 13 chr4 133586677 133587385 -68740962 + L1ME1 LINE L1 4419 5161 -985 410 219 12 0 chr4 133587390 133587472 -68740875 - FLAM_C SINE Alu -25 118 36 370 271 108 0 chr4 133587472 133587601 -68740746 + L1ME1 LINE L1 5163 5305 -841 375 301 14 21 chr4 133587622 133587765 -68740582 + L1ME1 LINE L1 6000 6141 -25 376 216 10 31 chr4 133587801 133587898 -68740449 + L1MC5 LINE L1 7813 7907 -54 350 267 33 0 chr4 133588929 133589019 -68739328 + L2 LINE L2 3221 3313 0 578 306 31 0 chr4 133590627 133590823 -68737524 + MER63A DNA MER1_type 5 206 -4 1000 102 0 29 chr4 133591073 133591210 -68737137 - AluSq/x SINE Alu -179 133 1 313 281 105 35 chr4 133592912 133593083 -68735264 + L2 LINE L2 3098 3280 -33 192 179 0 0 chr4 133593597 133593636 -68734711 + GA-rich Low_complexity Low_complexity 3 41 0 5656 83 53 10 chr4 133595730 133596541 -68731806 - L1PA10 LINE L1 -1 6167 5322 411 321 8 23 chr4 133599926 133600057 -68728290 + L2 LINE L2 3185 3313 0 21 0 0 0 chr4 133600107 133600128 -68728219 + AT_rich Low_complexity Low_complexity 1 21 0 326 289 149 38 chr4 133600140 133600192 -68728155 + L2 LINE L2 725 770 -2544 2252 130 8 8 chr4 133600192 133600547 -68727800 + THE1A LTR MaLR 1 355 0 11247 96 18 3 chr4 133600547 133602104 -68726243 + THE1A-int LTR MaLR 1 1580 0 2310 106 29 9 chr4 133602104 133602452 -68725895 + THE1A LTR MaLR 1 355 0 326 289 149 38 chr4 133602452 133602632 -68725715 + L2 LINE L2 769 985 -2329 251 301 45 45 chr4 133602807 133602940 -68725407 + MLT1H LTR MaLR 202 334 -215 1974 218 7 25 chr4 133603157 133603593 -68724754 + MSTC LTR MaLR 1 428 0 304 156 10 115 chr4 133603879 133603975 -68724372 - MER103 DNA DNA -73 93 8 24 32 0 0 chr4 133606345 133606376 -68721971 + AT_rich Low_complexity Low_complexity 1 31 0 3454 113 0 6 chr4 133606427 133606933 -68721414 - L1PA14 LINE L1 -76 6085 5583 21 57 0 0 chr4 133607211 133607246 -68721101 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr4 133607276 133607318 -68721029 + AT_rich Low_complexity Low_complexity 1 42 0 2260 107 0 3 chr4 133607771 133608069 -68720278 + AluSx SINE Alu 1 297 -15 2071 132 0 0 chr4 133608423 133608719 -68719628 + AluSc SINE Alu 1 296 -13 466 257 169 7 chr4 133609341 133609477 -68718870 + MER5A DNA MER1_type 29 186 -3 197 32 0 32 chr4 133610846 133610877 -68717470 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr4 133611346 133611381 -68716966 + AT_rich Low_complexity Low_complexity 1 35 0 272 263 97 35 chr4 133611845 133611959 -68716388 + L1MEd LINE L1 330 450 -5669 300 267 200 0 chr4 133612331 133612451 -68715896 + L1MEd LINE L1 2238 2381 -3748 2630 23 3 3 chr4 133612470 133612778 -68715569 + AluY SINE Alu 2 309 -2 374 273 146 36 chr4 133612955 133613120 -68715227 - MER5A DNA MER1_type 0 189 7 817 373 45 7 chr4 133613340 133613761 -68714586 + MERVL LTR ERVL 3987 4423 -1231 671 276 47 0 chr4 133613910 133614102 -68714245 - MER58A DNA MER1_type -23 201 1 649 295 112 75 chr4 133614203 133614766 -68713581 + MERVL LTR ERVL 4783 5366 -398 272 293 0 38 chr4 133617297 133617403 -68710944 - 7SK RNA RNA -90 103 2 21 36 0 0 chr4 133617777 133617805 -68710542 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 133618088 133618116 -68710231 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr4 133618673 133618708 -68709639 + AT_rich Low_complexity Low_complexity 1 35 0 294 319 51 7 chr4 133619132 133619270 -68709077 + MERVL LTR ERVL 2050 2193 -3292 28 48 0 0 chr4 133619403 133619445 -68708902 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr4 133619655 133619691 -68708656 + AT_rich Low_complexity Low_complexity 1 36 0 215 260 0 0 chr4 133619724 133619774 -68708573 - MIR3 SINE MIR -4 204 155 21 57 0 0 chr4 133620908 133620943 -68707404 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 133620998 133621026 -68707321 + AT_rich Low_complexity Low_complexity 1 28 0 725 177 72 101 chr4 133621713 133621922 -68706425 - MER20 DNA MER1_type 0 219 17 267 191 0 0 chr4 133622420 133622483 -68705864 + (TA)n Simple_repeat Simple_repeat 1 63 0 507 216 222 24 chr4 133622493 133622660 -68705687 - MIR SINE MIR -38 224 25 22 0 0 0 chr4 133623149 133623171 -68705176 + AT_rich Low_complexity Low_complexity 1 22 0 596 299 16 16 chr4 133623186 133623370 -68704977 - MIR SINE MIR -50 212 29 1418 227 60 106 chr4 133624176 133624806 -68703541 + MER97c DNA MER1_type? 5 605 -485 1720 181 0 26 chr4 133625218 133625527 -68702820 + AluJb SINE Alu 6 306 -6 434 266 100 37 chr4 133625529 133625770 -68702577 + MER97c DNA MER1_type? 834 1089 -1 218 309 114 45 chr4 133625807 133626008 -68702339 + L3 LINE CR1 1347 1561 -16 251 207 171 0 chr4 133626208 133626290 -68702057 + MLT2B2 LTR ERVL 3 98 -417 855 213 38 89 chr4 133626297 133626351 -68701996 + MER52A LTR ERV1 667 722 -1033 2115 121 41 39 chr4 133626351 133626714 -68701633 - THE1B LTR MaLR 0 364 1 11113 105 11 3 chr4 133626714 133628281 -68700066 - THE1B-int LTR MaLR 0 1580 1 2132 134 39 31 chr4 133628283 133628642 -68699705 - THE1B LTR MaLR -2 362 1 855 213 38 89 chr4 133628642 133629032 -68699315 + MER52A LTR ERV1 722 1232 -523 636 267 31 46 chr4 133629269 133629608 -68698739 + MER52A LTR ERV1 1307 1755 0 1169 204 88 86 chr4 133629608 133630015 -68698332 + MLT2B2 LTR ERVL 94 501 -14 2501 194 32 2 chr4 133630256 133630757 -68697590 + LTR53 LTR ERVL 1 516 -3 23 0 0 0 chr4 133631235 133631258 -68697089 + AT_rich Low_complexity Low_complexity 1 23 0 213 209 0 0 chr4 133631300 133631343 -68697004 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 36 0 0 chr4 133633374 133633402 -68694945 + AT_rich Low_complexity Low_complexity 1 28 0 266 148 45 23 chr4 133633402 133633490 -68694857 + (TATAA)n Simple_repeat Simple_repeat 1 90 0 1066 194 111 0 chr4 133633888 133634176 -68694171 - MER33 DNA MER1_type -1 323 4 1431 218 37 24 chr4 133634590 133634954 -68693393 - MLT1A2 LTR MaLR 0 374 2 387 278 77 29 chr4 133635360 133635569 -68692778 - L1ME3A LINE L1 -300 5870 5652 719 189 0 0 chr4 133636594 133636716 -68691631 + FLAM_C SINE Alu 2 123 -20 27 73 0 0 chr4 133636718 133636773 -68691574 + AT_rich Low_complexity Low_complexity 1 55 0 2070 110 3 7 chr4 133688821 133689113 -68639234 + AluSq SINE Alu 1 291 -22 361 111 0 0 chr4 133690172 133690226 -68638121 - MADE1 DNA Mariner 0 80 27 303 368 108 4 chr4 133690229 133690479 -68637868 - L2 LINE L2 -19 3294 3019 524 306 77 6 chr4 133690959 133691129 -68637218 - MER5A DNA MER1_type -1 188 7 25 0 0 0 chr4 133692604 133692629 -68635718 + AT_rich Low_complexity Low_complexity 1 25 0 485 56 62 37 chr4 133694012 133694047 -68634300 + (TA)n Simple_repeat Simple_repeat 2 35 -132 1789 218 63 65 chr4 133694047 133694602 -68633745 - MLT2B3 LTR ERVL 0 554 1 485 56 62 37 chr4 133694602 133694728 -68633619 + (TA)n Simple_repeat Simple_repeat 35 167 0 4016 114 52 5 chr4 133695430 133696044 -68632303 - LTR9B LTR ERV1 0 644 2 366 284 86 41 chr4 133696467 133696664 -68631683 + L1MC/D LINE L1 5283 5488 -2320 614 121 0 20 chr4 133697287 133697386 -68630961 - AluSp/q SINE Alu -14 299 203 895 334 53 8 chr4 133697490 133697864 -68630483 + L2 LINE L2 2044 2434 -880 1852 137 46 0 chr4 133698017 133698301 -68630046 - AluSq SINE Alu -16 297 1 2144 120 0 0 chr4 133698309 133698608 -68629739 - AluSx SINE Alu -13 299 1 185 150 0 25 chr4 133700117 133700157 -68628190 + (TATG)n Simple_repeat Simple_repeat 1 39 0 267 152 0 0 chr4 133700712 133700758 -68627589 + A-rich Low_complexity Low_complexity 1 46 0 1884 146 4 0 chr4 133701108 133701440 -68626907 - AluSx SINE Alu 0 333 1 225 0 0 0 chr4 133702333 133702358 -68625989 + (CA)n Simple_repeat Simple_repeat 2 26 0 273 342 60 7 chr4 133702506 133702655 -68625692 + MIR SINE MIR 105 261 -1 1035 198 128 89 chr4 133703286 133703469 -68624878 - MER39 LTR ERV1 0 707 533 2173 104 0 13 chr4 133703469 133703767 -68624580 - AluSg SINE Alu -16 294 1 1035 198 128 89 chr4 133703767 133703988 -68624359 - MER39 LTR ERV1 -174 533 287 211 296 28 0 chr4 133704156 133704227 -68624120 - L2 LINE L2 -252 3061 2989 1138 152 0 0 chr4 133704568 133704752 -68623595 - L1PA15 LINE L1 -5 6160 5977 27 0 0 0 chr4 133704842 133704869 -68623478 + AT_rich Low_complexity Low_complexity 1 27 0 320 202 101 30 chr4 133706085 133706184 -68622163 - L1MC4 LINE L1 -1 8041 7936 210 189 0 19 chr4 133706189 133706242 -68622105 + (TA)n Simple_repeat Simple_repeat 1 52 0 195 222 0 0 chr4 133706258 133706303 -68622044 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 1960 259 118 10 chr4 133706313 133707008 -68621339 - L1MC4 LINE L1 -124 7918 7149 324 202 101 30 chr4 133708336 133708435 -68619912 - L1MC4 LINE L1 -1 8041 7936 212 200 18 0 chr4 133708440 133708495 -68619852 + (TA)n Simple_repeat Simple_repeat 1 56 0 196 209 15 30 chr4 133708511 133708578 -68619769 + (TATATG)n Simple_repeat Simple_repeat 5 70 0 593 280 109 5 chr4 133709466 133709677 -68618670 - MIR SINE MIR 0 262 30 23 0 0 0 chr4 133709833 133709856 -68618491 + AT_rich Low_complexity Low_complexity 1 23 0 194 174 22 0 chr4 133710772 133710818 -68617529 + (TA)n Simple_repeat Simple_repeat 2 48 0 252 361 19 13 chr4 133711069 133711227 -68617120 - MIR SINE MIR 0 262 104 639 278 86 0 chr4 133711419 133711628 -68616719 + LTR16C LTR ERVL 254 480 -11 474 310 50 31 chr4 133711982 133712240 -68616107 + HERVL LTR ERVL 362 624 -4372 1042 321 74 37 chr4 133712800 133713661 -68614686 + HERVL LTR ERVL 1341 2192 -2804 1892 149 0 13 chr4 133713661 133713969 -68614378 - AluJb SINE Alu -8 304 1 1042 321 74 37 chr4 133713969 133714024 -68614323 + HERVL LTR ERVL 2192 2244 -2752 367 351 81 23 chr4 133714076 133714469 -68613878 + HERVL LTR ERVL 2296 2711 -3053 5783 167 27 101 chr4 133715135 133715427 -68612920 + L1M4c LINE L1 899 1211 -5173 1972 128 0 13 chr4 133715427 133715725 -68612622 + AluSg SINE Alu 1 294 -16 5783 167 27 101 chr4 133715725 133716512 -68611835 + L1M4c LINE L1 1211 1824 -4560 189 0 0 0 chr4 133716512 133716533 -68611814 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 5783 167 27 101 chr4 133716533 133717059 -68611288 + L1M4c LINE L1 1824 2387 -3997 841 281 32 0 chr4 133717060 133717370 -68610977 + L1M4c LINE L1 2814 3133 -3249 * 2282 187 39 5 chr4 133717363 133717746 -68610601 + L1MA5 LINE L1 4868 5237 -1063 823 234 22 26 chr4 133717746 133717977 -68610370 + MER46A DNA MER2_type 3 232 -4 2282 187 39 5 chr4 133717977 133718363 -68609984 + L1MA5 LINE L1 5237 5668 -632 1876 200 24 0 chr4 133718363 133718768 -68609579 + L1MA5 LINE L1 5876 6300 0 4430 249 34 11 chr4 133718810 133720134 -68608213 + L1M4c LINE L1 3112 4466 -1916 1813 121 0 4 chr4 133721111 133721360 -68606987 + AluSx SINE Alu 1 248 -64 24 0 0 0 chr4 133723291 133723315 -68605032 + AT_rich Low_complexity Low_complexity 1 24 0 9033 90 12 0 chr4 133723362 133725452 -68602895 + L1PA7 LINE L1 4010 6149 -5 2548 188 18 2 chr4 133725858 133726358 -68601989 - L1MB2 LINE L1 -2 6169 5662 592 93 0 41 chr4 133726358 133726455 -68601892 - Alu SINE Alu -8 303 211 2367 195 43 7 chr4 133726458 133727367 -68600980 - L1MB2 LINE L1 -503 5668 4555 1212 188 123 71 chr4 133727452 133727803 -68600544 - L1MC3 LINE L1 -240 7545 7177 300 329 0 0 chr4 133727813 133727895 -68600452 - MLT1F1 LTR MaLR -450 117 36 21 0 0 0 chr4 133727907 133727928 -68600419 + AT_rich Low_complexity Low_complexity 1 21 0 43 35 0 0 chr4 133727956 133728013 -68600334 + AT_rich Low_complexity Low_complexity 1 57 0 680 248 40 9 chr4 133728013 133728239 -68600108 - L1MC3 LINE L1 -691 7094 6862 862 200 70 30 chr4 133728241 133728511 -68599836 + L1MCa LINE L1 2175 2455 -3971 747 97 0 26 chr4 133728512 133728625 -68599722 - L1PB1 LINE L1 -146 6005 5896 726 158 0 0 chr4 133728625 133728743 -68599604 + L1PB1 LINE L1 6031 6150 -1 28 29 0 0 chr4 133728819 133728854 -68599493 + AT_rich Low_complexity Low_complexity 1 35 0 919 271 127 7 chr4 133728857 133729322 -68599025 + L1MCa LINE L1 2452 2972 -3454 294 169 22 45 chr4 133729372 133729461 -68598886 + L1MCa LINE L1 3460 3546 -2880 661 300 132 5 chr4 133730278 133730498 -68597849 + MIR SINE MIR 2 249 -13 194 339 36 57 chr4 133730642 133730890 -68597457 - L2 LINE L2 -1209 2105 1863 7443 27 0 0 chr4 133731455 133732910 -68595437 - L1PA3 LINE L1 -1 6154 4694 9150 33 0 0 chr4 133732910 133734006 -68594341 + L1PA3 LINE L1 3589 4684 -1462 410 313 5 56 chr4 133734156 133734354 -68593993 - LTR41 LTR ERVL -583 190 3 503 301 65 53 chr4 133734650 133734745 -68593602 + L1MC/D LINE L1 5292 5384 -2424 1979 120 0 7 chr4 133734745 133735051 -68593296 + AluSg SINE Alu 1 304 0 503 301 65 53 chr4 133735051 133735446 -68592901 + L1MC/D LINE L1 5384 5789 -2019 * 11011 234 22 10 chr4 133735444 133738298 -68590049 + L1P LINE L1 2017 4905 -1241 351 0 0 0 chr4 133739486 133739525 -68588822 + (TA)n Simple_repeat Simple_repeat 2 40 0 1663 309 144 48 chr4 133739703 133740550 -68587797 + L2 LINE L2 124 888 -2426 2169 103 0 0 chr4 133740550 133740840 -68587507 - AluSq SINE Alu -23 290 1 1663 309 144 48 chr4 133740840 133741504 -68586843 + L2 LINE L2 888 1781 -1533 246 175 0 0 chr4 133741651 133741691 -68586656 - MER53 DNA DNA -143 46 7 24 32 0 0 chr4 133741803 133741834 -68586513 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 133742218 133742241 -68586106 + AT_rich Low_complexity Low_complexity 1 23 0 2016 191 44 83 chr4 133742688 133743051 -68585296 - L1MDb LINE L1 -5063 1346 1019 2642 87 5 0 chr4 133743051 133743421 -68584926 - L1PA8 LINE L1 0 6172 5801 2016 191 44 83 chr4 133743421 133743717 -68584630 - L1MDb LINE L1 -5390 1019 713 22 35 0 0 chr4 133744772 133744801 -68583546 + AT_rich Low_complexity Low_complexity 1 29 0 2744 168 24 50 chr4 133745137 133745713 -68582634 - LTR9 LTR ERV1 -51 561 1 539 228 0 24 chr4 133746023 133746146 -68582201 + FLAM_A SINE Alu 1 120 -13 237 260 0 0 chr4 133746810 133746887 -68581460 + (TA)n Simple_repeat Simple_repeat 1 77 0 22 56 0 0 chr4 133746924 133746960 -68581387 + AT_rich Low_complexity Low_complexity 1 36 0 253 254 79 48 chr4 133747015 133747141 -68581206 + MIR SINE MIR 77 206 -56 255 277 194 19 chr4 133748941 133749096 -68579251 - MIR SINE MIR 0 262 81 374 417 22 0 chr4 133749556 133749779 -68578568 + L2 LINE L2 1127 1354 -1960 1912 119 10 26 chr4 133750064 133750376 -68577971 - AluSq SINE Alu -6 307 1 29 28 0 0 chr4 133750605 133750641 -68577706 + AT_rich Low_complexity Low_complexity 1 36 0 1854 149 20 7 chr4 133750804 133751099 -68577248 - AluSx SINE Alu -9 303 5 388 353 52 66 chr4 133751099 133751271 -68577076 + L2 LINE L2 2214 2387 -927 186 71 0 0 chr4 133751271 133751299 -68577048 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2244 39 0 14 chr4 133751309 133751589 -68576758 - AluY SINE Alu -35 276 1 388 353 52 66 chr4 133751589 133751835 -68576512 + L2 LINE L2 2396 2639 -675 298 293 152 0 chr4 133751922 133752086 -68576261 + Charlie7 DNA MER1_type 43 231 -2381 889 297 45 12 chr4 133752229 133752653 -68575694 + Charlie7 DNA MER1_type 285 722 -1890 21 0 0 0 chr4 133752653 133752674 -68575673 + AT_rich Low_complexity Low_complexity 1 21 0 230 274 65 27 chr4 133752689 133752875 -68575472 + Charlie7 DNA MER1_type 2417 2609 -3 740 201 82 0 chr4 133753438 133753632 -68574715 + L1MA9 LINE L1 6069 6278 -34 254 297 40 0 chr4 133753704 133753778 -68574569 + L3 LINE CR1 1488 1564 -13 755 231 46 0 chr4 133755330 133755503 -68572844 + MER20 DNA MER1_type 39 219 0 2109 121 0 3 chr4 133756602 133756900 -68571447 - AluSg SINE Alu -13 297 1 422 297 17 17 chr4 133757256 133757431 -68570916 + MER69A DNA AcHobo 1 175 -2 31 26 0 0 chr4 133757883 133757921 -68570426 + AT_rich Low_complexity Low_complexity 1 38 0 342 371 45 10 chr4 133758735 133758937 -68569410 + LTR16C LTR ERVL 35 243 -248 1769 235 45 20 chr4 133759021 133759514 -68568833 + MLT1D LTR MaLR 1 505 0 478 289 12 139 chr4 133760071 133760552 -68567795 - LTR67 LTR ERVL -41 516 97 2263 107 3 0 chr4 133761892 133762200 -68566147 - AluSc SINE Alu 0 309 1 296 200 0 0 chr4 133762974 133763029 -68565318 + L1M4 LINE L1 4255 4309 -1837 288 0 0 0 chr4 133763032 133763064 -68565283 + (TG)n Simple_repeat Simple_repeat 2 33 0 22 70 0 0 chr4 133763096 133763139 -68565208 + AT_rich Low_complexity Low_complexity 1 43 0 1188 272 65 30 chr4 133763165 133763826 -68564521 + L1ME2 LINE L1 2808 3445 -2701 18967 93 15 6 chr4 133763826 133764773 -68563574 + L1PA7 LINE L1 2562 3499 -2655 2078 112 10 3 chr4 133764773 133765076 -68563271 + AluSx SINE Alu 1 305 -7 18967 93 15 6 chr4 133765076 133767700 -68560647 + L1PA7 LINE L1 3499 6148 -6 1188 272 65 30 chr4 133767700 133767817 -68560530 + L1ME2 LINE L1 3445 5084 -1062 336 217 9 26 chr4 133767822 133767937 -68560410 + CT-rich Low_complexity Low_complexity 1 113 0 615 169 20 14 chr4 133767968 133768116 -68560231 + CT-rich Low_complexity Low_complexity 2 150 0 1390 245 79 67 chr4 133768174 133768429 -68559918 + L1ME2 LINE L1 5421 5671 -493 2053 129 58 25 chr4 133768429 133768792 -68559555 + THE1C LTR MaLR 1 375 0 1390 245 79 67 chr4 133768792 133769271 -68559076 + L1ME2 LINE L1 5671 6164 0 2202 167 47 5 chr4 133769545 133769946 -68558401 - MSTB LTR MaLR -1 425 8 258 338 50 67 chr4 133770536 133770835 -68557512 + L2 LINE L2 3019 3312 -1 258 160 0 0 chr4 133771702 133771752 -68556595 + (CAT)n Simple_repeat Simple_repeat 3 52 0 27 0 0 0 chr4 133773134 133773161 -68555186 + AT_rich Low_complexity Low_complexity 1 27 0 261 327 10 0 chr4 133773818 133773922 -68554425 + MLT1L LTR MaLR 135 239 -376 279 284 66 71 chr4 133774030 133774138 -68554209 + MLT1L LTR MaLR 420 528 -87 315 0 0 0 chr4 133774138 133774173 -68554174 + (CA)n Simple_repeat Simple_repeat 2 36 0 279 284 66 71 chr4 133774173 133774261 -68554086 + MLT1L LTR MaLR 528 615 0 238 214 0 0 chr4 133774437 133774479 -68553868 - MER5A DNA MER1_type 0 189 148 2545 166 9 12 chr4 133776313 133776740 -68551607 + MSTB LTR MaLR 1 426 0 404 342 86 12 chr4 133776747 133776990 -68551357 - MIR SINE MIR 0 262 2 269 317 129 48 chr4 133778093 133778427 -68549920 + L2 LINE L2 1792 2152 -1162 767 294 96 41 chr4 133779260 133779679 -68548668 - LTR8A LTR ERV1 0 727 286 402 219 6 154 chr4 133779860 133780029 -68548318 - LTR8 LTR ERV1 -547 144 1 5105 113 68 20 chr4 133780404 133781236 -68547111 - MER4D LTR ERV1 0 872 1 23 68 0 0 chr4 133781280 133781324 -68547023 + AT_rich Low_complexity Low_complexity 1 44 0 1902 303 47 49 chr4 133781373 133782086 -68546261 + L1MB8 LINE L1 9 722 -6137 209 0 97 0 chr4 133782086 133782117 -68546230 + A-rich Low_complexity Low_complexity 2 35 0 1902 303 47 49 chr4 133782117 133782204 -68546143 + L1MB8 LINE L1 722 808 -6051 2555 218 25 39 chr4 133782234 133782831 -68545516 + L1MB8 LINE L1 635 1223 -5636 1386 245 12 3 chr4 133782844 133783187 -68545160 + L1MB8 LINE L1 5421 5766 -1191 630 135 0 0 chr4 133783189 133783285 -68545062 + AluY SINE Alu 1 96 -215 2483 208 50 34 chr4 133783389 133784136 -68544211 + L1MB8 LINE L1 5945 6704 -285 201 39 0 0 chr4 133784242 133784268 -68544079 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2696 3 0 0 chr4 133784268 133784569 -68543778 - L1PA2 LINE L1 -16 6139 5839 485 190 0 9 chr4 133785234 133785350 -68542997 + CT-rich Low_complexity Low_complexity 2 116 0 199 313 0 0 chr4 133786944 133786992 -68541355 + MIR SINE MIR 200 247 -15 766 111 24 8 chr4 133787191 133787317 -68541030 - L1PA13 LINE L1 -9 6154 6027 22 0 0 0 chr4 133787710 133787732 -68540615 + AT_rich Low_complexity Low_complexity 1 22 0 292 318 19 19 chr4 133789674 133789781 -68538566 - MER5B DNA MER1_type -69 109 3 21 71 0 0 chr4 133789801 133789843 -68538504 + AT_rich Low_complexity Low_complexity 1 42 0 213 175 0 0 chr4 133790472 133790512 -68537835 + (CA)n Simple_repeat Simple_repeat 1 40 0 555 130 0 138 chr4 133790961 133791084 -68537263 - MER41A LTR ERV1 -88 466 361 6496 86 6 0 chr4 133791086 133791980 -68536367 - L1PA14 LINE L1 -9 6152 5254 682 159 76 3 chr4 133792391 133792556 -68535791 + L1MC3 LINE L1 6944 7101 -684 236 108 27 0 chr4 133792562 133792599 -68535748 - MLT2D LTR ERVL 0 515 478 180 111 0 0 chr4 133792602 133792629 -68535718 + (TG)n Simple_repeat Simple_repeat 2 28 0 229 307 23 0 chr4 133792651 133792739 -68535608 - L1MC4 LINE L1 -1339 6703 6614 323 241 0 17 chr4 133792742 133792858 -68535489 + (CATATA)n Simple_repeat Simple_repeat 1 114 0 1719 180 88 9 chr4 133792865 133793204 -68535143 - MLT2D LTR ERVL -48 366 1 254 262 0 0 chr4 133793225 133793286 -68535061 + MLT1F1 LTR MaLR 64 124 -443 2607 213 14 12 chr4 133793296 133793882 -68534465 + L1MC3 LINE L1 7199 7785 0 184 180 60 60 chr4 133794005 133794055 -68534292 + MIR SINE MIR 198 247 -15 29 0 0 0 chr4 133795155 133795184 -68533163 + AT_rich Low_complexity Low_complexity 1 29 0 577 314 40 0 chr4 133795522 133795774 -68532573 - MIR SINE MIR 0 262 1 403 339 116 11 chr4 133795935 133796124 -68532223 + MIR SINE MIR 49 257 -5 16931 173 36 19 chr4 133796351 133798367 -68529980 + L1MA1 LINE L1 15 2108 -5457 4185 29 0 8 chr4 133798367 133798877 -68529470 + L1PA2 LINE L1 5650 6155 0 16931 173 36 19 chr4 133798877 133800040 -68528307 + L1MA1 LINE L1 2108 3249 -4316 5277 114 31 0 chr4 133800353 133801133 -68527214 - L1PA14 LINE L1 -2 6159 5356 13804 168 18 44 chr4 133801138 133803533 -68524814 + L1MA1 LINE L1 3267 5472 -2249 2096 147 0 0 chr4 133803533 133803839 -68524508 + AluSg SINE Alu 2 307 -3 13804 168 18 44 chr4 133803839 133806028 -68522319 + L1MA1 LINE L1 5472 7717 -4 25 31 0 0 chr4 133806028 133806060 -68522287 + AT_rich Low_complexity Low_complexity 1 32 0 200 362 96 37 chr4 133806473 133806619 -68521728 - L3 LINE CR1 -380 1197 1036 1021 184 41 133 chr4 133806619 133807031 -68521316 + MLT1A2 LTR MaLR 1 374 0 200 362 96 37 chr4 133807031 133807072 -68521275 - L3 LINE CR1 -541 1036 999 31 68 0 0 chr4 133807855 133807914 -68520433 + AT_rich Low_complexity Low_complexity 1 59 0 25 31 0 0 chr4 133808322 133808354 -68519993 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr4 133809521 133809545 -68518802 + AT_rich Low_complexity Low_complexity 1 24 0 496 314 93 0 chr4 133810199 133810371 -68517976 - MIR SINE MIR -11 251 64 27 49 0 0 chr4 133810847 133810888 -68517459 + AT_rich Low_complexity Low_complexity 1 41 0 266 253 23 0 chr4 133810974 133811061 -68517286 + L1MC4 LINE L1 6615 6703 -1339 23 68 0 0 chr4 133811704 133811748 -68516599 + AT_rich Low_complexity Low_complexity 1 44 0 22 70 0 0 chr4 133811894 133811937 -68516410 + AT_rich Low_complexity Low_complexity 1 43 0 263 333 50 10 chr4 133812322 133812421 -68515926 - MIR SINE MIR -82 126 24 26 50 0 0 chr4 133812495 133812535 -68515812 + AT_rich Low_complexity Low_complexity 1 40 0 244 302 127 16 chr4 133812815 133812941 -68515406 - MIR SINE MIR -71 191 52 23 68 0 0 chr4 133813072 133813116 -68515231 + AT_rich Low_complexity Low_complexity 1 44 0 317 330 58 70 chr4 133813526 133813871 -68514476 - MLT1J2 LTR MaLR -27 423 83 279 0 0 0 chr4 133814139 133814170 -68514177 + (TC)n Simple_repeat Simple_repeat 2 32 0 689 242 87 40 chr4 133815478 133815776 -68512571 - MER33 DNA MER1_type 0 324 13 3447 163 26 38 chr4 133817605 133818360 -68509987 - L1MA9 LINE L1 0 6312 5567 2508 218 145 82 chr4 133818366 133818589 -68509758 + LTR28 LTR ERV1 1 209 -811 2026 125 0 0 chr4 133818589 133818913 -68509434 + AluSg SINE Alu 1 324 0 2508 218 145 82 chr4 133818913 133819648 -68508699 + LTR28 LTR ERV1 209 1020 0 1485 188 2 45 chr4 133819648 133820127 -68508220 - L1MA9 LINE L1 -743 5403 5104 1910 193 64 10 chr4 133820131 133820535 -68507812 + MSTB LTR MaLR 1 426 0 7816 200 45 5 chr4 133820577 133822119 -68506228 + MSTB-int LTR MaLR 28 1631 -20 1130 176 86 5 chr4 133822119 133822340 -68506007 + MSTA LTR MaLR 190 428 0 1616 229 50 7 chr4 133822343 133822802 -68505545 - L1MA9 LINE L1 -1045 5101 4623 2073 86 0 4 chr4 133823217 133823486 -68504861 - AluY SINE Alu -15 296 29 34 42 0 0 chr4 133823863 133823911 -68504436 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr4 133823968 133823990 -68504357 + AT_rich Low_complexity Low_complexity 1 22 0 458 293 116 33 chr4 133824185 133824701 -68503646 - HAL1b LINE L1 -565 783 225 246 277 12 0 chr4 133825720 133825803 -68502544 + L1ME4a LINE L1 5965 6048 -73 1449 155 7 45 chr4 133826843 133827133 -68501214 + L1MC1 LINE L1 6037 6315 -18 1944 155 134 8 chr4 133827319 133827699 -68500648 - MSTA LTR MaLR 0 428 1 8728 161 11 35 chr4 133827699 133829297 -68499050 - MSTA-int LTR MaLR 0 1580 22 1866 155 142 21 chr4 133829303 133829683 -68498664 - MSTA LTR MaLR -2 426 1 25 31 0 0 chr4 133830730 133830762 -68497585 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr4 133831733 133831755 -68496592 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 133831934 133831958 -68496389 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 133832072 133832097 -68496250 + AT_rich Low_complexity Low_complexity 1 25 0 1443 210 43 20 chr4 133834921 133835221 -68493126 - AluJb SINE Alu -5 307 1 832 233 153 7 chr4 133835425 133835705 -68492642 + MLT1C LTR MaLR 136 505 0 1575 204 0 3 chr4 133835735 133836034 -68492313 + AluJo SINE Alu 3 300 -12 226 264 83 0 chr4 133836138 133836210 -68492137 + L1ME LINE L1 3500 3577 -2569 940 254 92 34 chr4 133836251 133836699 -68491648 + L1ME LINE L1 3664 4137 -2009 248 169 15 31 chr4 133836700 133836765 -68491582 + A-rich Low_complexity Low_complexity 3 66 0 272 242 44 0 chr4 133836767 133836858 -68491489 + L1ME LINE L1 4160 4254 -1892 403 136 0 0 chr4 133836892 133836958 -68491389 + L1MC1 LINE L1 5388 5453 -880 3868 184 29 40 chr4 133837063 133837924 -68490423 + L1MC1 LINE L1 5462 6313 -20 832 259 109 69 chr4 133837944 133838359 -68489988 + L1ME LINE L1 4279 4676 -1470 1803 142 4 0 chr4 133838359 133838633 -68489714 + AluSx SINE Alu 1 275 -37 832 259 109 69 chr4 133838633 133839129 -68489218 + L1ME LINE L1 4676 5226 -920 186 43 0 0 chr4 133839157 133839180 -68489167 + (CA)n Simple_repeat Simple_repeat 2 24 0 1926 163 9 86 chr4 133839220 133839675 -68488672 + L1MA5A LINE L1 5878 6297 0 704 272 76 5 chr4 133839678 133839902 -68488445 + L1ME LINE L1 5330 5569 -595 1319 188 173 14 chr4 133839905 133840326 -68488021 + L1MCa LINE L1 1859 2346 -4194 1200 231 38 120 chr4 133840467 133841358 -68486989 + L1MC4 LINE L1 7207 8024 -18 22 0 0 0 chr4 133841608 133841630 -68486717 + AT_rich Low_complexity Low_complexity 1 22 0 564 126 11 0 chr4 133841857 133841944 -68486403 + AluS SINE Alu 1 88 -224 225 226 129 21 chr4 133942235 133942328 -68386019 - L1MC4 LINE L1 -1333 6709 6607 390 285 32 0 chr4 133943075 133943198 -68385149 + L1MCa LINE L1 19 145 -6395 1975 71 0 0 chr4 133943300 133943554 -68384793 + L1PA7 LINE L1 5898 6151 -3 3506 235 31 32 chr4 133943554 133944647 -68383700 + L1MCa LINE L1 2777 3868 -2672 227 275 50 0 chr4 133944751 133944831 -68383516 + L1MC4 LINE L1 6615 6698 -1344 * 241 226 0 16 chr4 133944789 133944851 -68383496 - L1MCa LINE L1 -4358 2068 2008 * 254 267 47 0 chr4 133944822 133944908 -68383439 - L1MC4 LINE L1 -1339 6983 6894 * 290 273 23 0 chr4 133944834 133944922 -68383425 + L1MC4 LINE L1 6614 6703 -1339 741 279 5 19 chr4 133945342 133945557 -68382790 - MER58A DNA MER1_type -12 212 1 39 22 0 0 chr4 133946524 133946570 -68381777 + AT_rich Low_complexity Low_complexity 1 46 0 352 344 77 35 chr4 133946736 133946995 -68381352 - L1ME3 LINE L1 -278 5884 5615 873 236 105 23 chr4 133947460 133947523 -68380824 - L1MD1 LINE L1 0 6242 6186 2136 119 3 0 chr4 133947523 133947826 -68380521 + AluY SINE Alu 1 304 -7 1510 218 7 3 chr4 133947834 133948142 -68380205 + AluJo SINE Alu 3 311 -1 873 236 105 23 chr4 133948142 133948374 -68379973 - L1MD1 LINE L1 -62 6180 5913 * 2351 225 59 22 chr4 133948365 133948996 -68379351 - L1M2 LINE L1 -4282 2567 1910 1134 110 43 0 chr4 133948996 133949160 -68379187 + L1PA11 LINE L1 5995 6165 -9 3233 199 37 45 chr4 133949160 133950181 -68378166 + L1MA5 LINE L1 4617 5572 -733 1349 137 4 4 chr4 133950181 133950408 -68377939 + L1MA5 LINE L1 6062 6288 -12 3233 199 37 45 chr4 133950408 133950593 -68377754 + L1MA5 LINE L1 5572 5757 -548 1213 237 78 5 chr4 133950607 133951047 -68377300 - L1MD1 LINE L1 -309 5933 5429 230 133 83 0 chr4 133951695 133951755 -68376592 - L1MD3 LINE L1 -896 7099 7035 760 348 62 15 chr4 133952305 133952773 -68375574 + L2 LINE L2 2804 3293 -20 484 284 84 0 chr4 133953838 133953993 -68374354 + LTR50 LTR ERVL 7 174 -621 828 276 107 19 chr4 133954122 133954495 -68373852 + LTR50 LTR ERVL 387 792 -3 2342 88 0 0 chr4 133955624 133955929 -68372418 - AluY SINE Alu -6 305 1 23 0 0 0 chr4 133956276 133956299 -68372048 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr4 133956732 133956768 -68371579 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr4 133957714 133957744 -68370603 + AT_rich Low_complexity Low_complexity 1 30 0 26 74 0 0 chr4 133959241 133959295 -68369052 + AT_rich Low_complexity Low_complexity 1 54 0 507 304 145 45 chr4 133959791 133960343 -68368004 + L2 LINE L2 1978 2584 -730 295 235 49 111 chr4 133960406 133960568 -68367779 + LTR16A LTR ERVL 70 221 -229 256 83 0 0 chr4 133962675 133962711 -68365636 + tRNA-Gln-CAG tRNA tRNA 1 36 -39 210 237 0 0 chr4 133964200 133964238 -68364109 + polypurine Low_complexity Low_complexity 4 41 0 340 337 132 19 chr4 133964452 133964657 -68363690 + MIR SINE MIR 14 241 -21 39 22 0 0 chr4 133964740 133964786 -68363561 + AT_rich Low_complexity Low_complexity 1 46 0 319 314 39 0 chr4 133964829 133964931 -68363416 + MIR SINE MIR 34 139 -69 394 294 65 18 chr4 133965706 133965876 -68362471 - L2 LINE L2 -6 3307 3130 234 0 0 0 chr4 133966500 133966526 -68361821 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 281 133 33 0 chr4 133966624 133966684 -68361663 + (CATATA)n Simple_repeat Simple_repeat 6 67 0 230 270 101 0 chr4 133966820 133966909 -68361438 + MIR SINE MIR 118 215 -47 6644 266 73 20 chr4 133967093 133969257 -68359090 - L1MC2 LINE L1 -7 6755 4708 1901 94 4 18 chr4 133969257 133969533 -68358814 - AluSc SINE Alu -9 300 29 6644 266 73 20 chr4 133969533 133971246 -68357101 - L1MC2 LINE L1 -2054 4708 2579 2070 205 261 11 chr4 133971293 133971783 -68356564 - L1MC2 LINE L1 -3991 2573 2207 1813 158 33 87 chr4 133971783 133972233 -68356114 - MSTA LTR MaLR 0 428 3 2070 205 261 11 chr4 133972233 133972488 -68355859 - L1MC2 LINE L1 -4357 2207 1641 180 0 0 0 chr4 133972507 133972527 -68355820 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 2139 228 62 19 chr4 133972529 133973196 -68355151 - L1MC2 LINE L1 -4976 1588 894 1077 252 30 27 chr4 133973219 133973548 -68354799 - MLT1B LTR MaLR 0 390 61 1371 253 75 97 chr4 133973574 133974452 -68353895 - L1MC2 LINE L1 -5180 865 7 1551 193 20 10 chr4 133974489 133974795 -68353552 - AluJb SINE Alu 0 312 4 190 309 24 49 chr4 133975436 133975559 -68352788 - MIR SINE MIR -56 206 87 216 261 0 45 chr4 133975933 133976021 -68352326 + T-rich Low_complexity Low_complexity 4 87 0 1957 137 7 3 chr4 133976127 133976440 -68351907 - AluSx SINE Alu 0 314 1 381 331 38 24 chr4 133976617 133976917 -68351430 - MLT1J LTR MaLR -172 274 9 33 25 0 0 chr4 133977356 133977396 -68350951 + AT_rich Low_complexity Low_complexity 1 40 0 2191 100 3 22 chr4 133977699 133978018 -68350329 - AluSq SINE Alu 0 313 1 22 35 0 0 chr4 133978329 133978358 -68349989 + AT_rich Low_complexity Low_complexity 1 29 0 285 276 66 0 chr4 133978405 133978481 -68349866 + L2 LINE L2 3229 3309 -4 22 0 0 0 chr4 133978488 133978510 -68349837 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr4 133978551 133978579 -68349768 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr4 133978616 133978643 -68349704 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1936 136 0 7 chr4 133978646 133978926 -68349421 - AluSc SINE Alu -31 278 1 1299 315 134 19 chr4 133979256 133979482 -68348865 + L2 LINE L2 2303 2502 -811 2382 59 0 7 chr4 133979482 133979785 -68348562 - AluY SINE Alu -10 301 1 1299 315 134 19 chr4 133979785 133980449 -68347898 + L2 LINE L2 2502 3312 -1 241 264 0 0 chr4 133980775 133980828 -68347519 + L2 LINE L2 3261 3313 0 436 250 146 54 chr4 133980944 133981184 -68347163 - MIR SINE MIR 0 262 1 182 91 30 0 chr4 133981450 133981483 -68346864 + (TA)n Simple_repeat Simple_repeat 1 34 0 273 167 0 0 chr4 133981922 133981976 -68346371 + (TA)n Simple_repeat Simple_repeat 1 54 0 1182 243 57 23 chr4 133982201 133982678 -68345669 - L1MC5 LINE L1 -211 7750 7258 2172 111 3 16 chr4 133985478 133985793 -68342554 - AluSx SINE Alu -1 311 1 917 280 82 70 chr4 133987525 133988742 -68339605 + L1ME LINE L1 532 1813 -4448 1060 197 47 131 chr4 133988742 133989148 -68339199 - MLT1A2 LTR MaLR -2 372 1 917 280 82 70 chr4 133989148 133989205 -68339142 + L1ME LINE L1 1813 1868 -4393 23 33 0 0 chr4 133991480 133991510 -68336837 + AT_rich Low_complexity Low_complexity 1 30 0 725 221 59 28 chr4 133992573 133992827 -68335520 + LTR37B LTR ERV1 199 460 -8 209 255 49 39 chr4 133993493 133993595 -68334752 + MIR3 SINE MIR 102 204 -4 213 132 0 0 chr4 133993953 133993991 -68334356 + (TG)n Simple_repeat Simple_repeat 1 38 0 23 0 0 0 chr4 133994666 133994689 -68333658 + AT_rich Low_complexity Low_complexity 1 23 0 350 341 89 41 chr4 133995336 133995629 -68332718 + L2 LINE L2 2440 2746 -568 472 272 76 95 chr4 133995744 133996060 -68332287 - MER110 LTR ERV1 -16 475 166 238 308 161 50 chr4 133996432 133996692 -68331655 + L2 LINE L2 2929 3217 -96 1933 66 4 19 chr4 133996693 133996950 -68331397 + AluY SINE Alu 29 281 -30 25 75 0 0 chr4 133997467 133997520 -68330827 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr4 133997612 133997633 -68330714 + AT_rich Low_complexity Low_complexity 1 21 0 218 299 89 57 chr4 133997700 133997857 -68330490 - L2 LINE L2 -16 3297 3136 1202 272 121 17 chr4 133998265 133998677 -68329670 + LTR40b LTR ERVL 3 457 -5 1186 308 49 27 chr4 133998686 133999234 -68329113 + HERVL40 LTR ERVL 10 569 -4961 3689 286 52 30 chr4 133999254 134000570 -68327777 + HERVL40 LTR ERVL 2187 3531 -1999 624 209 0 0 chr4 134000570 134000685 -68327662 + LTR40a LTR ERVL 403 517 -2 25 0 0 0 chr4 134000810 134000835 -68327512 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr4 134000975 134000999 -68327348 + AT_rich Low_complexity Low_complexity 1 24 0 252 237 34 0 chr4 134002795 134002854 -68325493 + MARNA DNA Mariner 158 218 -368 448 276 8 16 chr4 134003179 134003302 -68325045 + MER94 DNA DNA 1 122 -12 1032 200 0 0 chr4 134004563 134004743 -68323604 - MLT1C LTR MaLR -90 377 198 470 148 49 0 chr4 134004744 134004825 -68323522 - MLT1C LTR MaLR -382 85 1 282 56 0 0 chr4 134005056 134005092 -68323255 + (CA)n Simple_repeat Simple_repeat 2 37 0 188 302 0 0 chr4 134005166 134005219 -68323128 + L2 LINE L2 3256 3308 -5 305 53 0 0 chr4 134005769 134005807 -68322540 - MST-int LTR MaLR -1378 273 236 * 1916 201 14 33 chr4 134005803 134006230 -68322117 + MSTA-int LTR MaLR 450 868 -712 275 195 24 0 chr4 134006260 134006342 -68322005 + (TATATG)n Simple_repeat Simple_repeat 2 85 0 264 59 0 0 chr4 134006418 134006452 -68321895 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 3875 150 5 65 chr4 134006661 134007409 -68320938 + MSTA-int LTR MaLR 878 1580 0 1997 155 126 5 chr4 134007409 134007790 -68320557 + MSTA LTR MaLR 1 427 -1 24 0 0 0 chr4 134007837 134007861 -68320486 + AT_rich Low_complexity Low_complexity 1 24 0 722 261 44 17 chr4 134007911 134008091 -68320256 - MER5A DNA MER1_type -4 185 1 22 35 0 0 chr4 134011366 134011395 -68316952 + AT_rich Low_complexity Low_complexity 1 29 0 25583 63 2 5 chr4 134011481 134012958 -68315389 + L1P LINE L1 7 1487 -4659 1555 69 0 20 chr4 134012958 134013162 -68315185 + AluY SINE Alu 106 305 -6 25583 63 2 5 chr4 134013162 134015032 -68313315 + L1P LINE L1 1487 3344 -2802 21 36 0 0 chr4 134015204 134015232 -68313115 + AT_rich Low_complexity Low_complexity 1 28 0 1987 188 52 77 chr4 134016167 134016725 -68311622 + MLT2B3 LTR ERVL 1 544 -10 33604 156 21 10 chr4 134016731 134018272 -68310075 + HERVL-B3-B3 LTR ERVL 1 1524 -4130 4707 56 5 2 chr4 134018272 134018861 -68309486 + LTR10C LTR ERV1 1 591 0 33604 156 21 10 chr4 134018861 134022911 -68305436 + HERVL-B3-B3 LTR ERVL 1524 5654 0 2362 200 19 67 chr4 134022915 134023484 -68304863 + MLT2B3 LTR ERVL 5 546 -8 353 277 163 30 chr4 134024182 134024348 -68303999 - MER5A DNA MER1_type 0 189 2 378 0 0 0 chr4 134025407 134025449 -68302898 + (CA)n Simple_repeat Simple_repeat 2 43 0 748 259 67 57 chr4 134026901 134027287 -68301060 - HAL1 LINE L1 -272 2235 1846 1734 295 92 41 chr4 134027342 134028671 -68299676 - HAL1 LINE L1 -797 1710 315 39 22 0 0 chr4 134028862 134028908 -68299439 + AT_rich Low_complexity Low_complexity 1 46 0 30 0 0 0 chr4 134029449 134029479 -68298868 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 134030273 134030294 -68298053 + AT_rich Low_complexity Low_complexity 1 21 0 3689 220 33 19 chr4 134031158 134032400 -68295947 - L1MB8 LINE L1 -5 6984 5727 868 229 5 25 chr4 134032396 134032597 -68295750 + L1M4 LINE L1 4748 4944 -1202 * 1217 206 64 58 chr4 134032595 134033095 -68295252 - L1MB8 LINE L1 -2944 4013 3511 * 1967 157 32 19 chr4 134033092 134033720 -68294627 - L1M1 LINE L1 -743 5403 4919 396 152 15 0 chr4 134033722 134033788 -68294559 + L1M1 LINE L1 4848 4914 -1232 * 1167 279 51 13 chr4 134033785 134034315 -68294032 - L1MB8 LINE L1 -4825 2134 1585 2859 70 22 132 chr4 134034316 134034861 -68293486 - L1PB1 LINE L1 -5 6146 5662 2661 213 16 6 chr4 134034868 134035497 -68292850 + L1 LINE L1 4769 5403 -743 * 4487 223 19 51 chr4 134035494 134036662 -68291685 - L1MB8 LINE L1 -5228 1631 502 305 280 11 21 chr4 134036702 134036795 -68291552 - MLT1J2 LTR MaLR -291 159 68 321 89 0 0 chr4 134036826 134036871 -68291476 + (TG)n Simple_repeat Simple_repeat 2 46 0 214 236 56 14 chr4 134036871 134036943 -68291404 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 2640 195 7 3 chr4 134037123 134037609 -68290738 - MLT2B1 LTR ERVL -19 535 1 1103 226 63 0 chr4 134037671 134037923 -68290424 - MLT1C LTR MaLR 0 467 200 1464 263 31 45 chr4 134038249 134038899 -68289448 + L1MC4a LINE L1 5263 5903 -1905 29 60 0 0 chr4 134039046 134039096 -68289251 + AT_rich Low_complexity Low_complexity 1 50 0 598 298 122 14 chr4 134039171 134039533 -68288814 + L1MC4a LINE L1 5508 5908 -1900 741 186 0 0 chr4 134039866 134040007 -68288340 + FLAM_C SINE Alu 1 141 0 763 295 56 56 chr4 134040027 134040458 -68287889 - L2 LINE L2 -1404 1910 1480 259 182 0 18 chr4 134040987 134041042 -68287305 - MLT1F1 LTR MaLR -12 555 502 3193 61 40 5 chr4 134041317 134041746 -68286601 - MLT2A1 LTR ERVL 0 444 1 2100 210 98 44 chr4 134041784 134042054 -68286293 + MER77 LTR ERV1 3 257 -348 1922 103 43 7 chr4 134042054 134042336 -68286011 + AluSp SINE Alu 3 294 -19 2100 210 98 44 chr4 134042336 134042637 -68285710 + MER77 LTR ERV1 257 605 0 303 347 61 15 chr4 134043089 134043285 -68285062 + L1ME LINE L1 5609 5813 -308 26 0 0 0 chr4 134043342 134043368 -68284979 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr4 134043426 134043449 -68284898 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr4 134043537 134043566 -68284781 + (CA)n Simple_repeat Simple_repeat 2 30 0 225 311 50 0 chr4 134044443 134044562 -68283785 - L1MC/D LINE L1 -1982 5826 5702 554 121 0 10 chr4 134045857 134045956 -68282391 + (TTCC)n Simple_repeat Simple_repeat 2 99 0 25 51 0 0 chr4 134046116 134046155 -68282192 + AT_rich Low_complexity Low_complexity 1 39 0 16316 35 7 1 chr4 134046636 134049392 -68278955 - L1PA4 LINE L1 0 6155 3388 253 301 11 65 chr4 134050387 134050480 -68277867 + L2 LINE L2 2972 3059 -213 200 353 17 25 chr4 134050687 134050806 -68277541 - MER5A DNA MER1_type -18 171 54 1792 174 15 0 chr4 134051428 134051755 -68276592 + L1MC1 LINE L1 6002 6333 0 212 290 191 55 chr4 134052325 134052508 -68275839 + MIR SINE MIR 30 237 -25 506 159 0 0 chr4 134053211 134053299 -68275048 + L1PB3 LINE L1 6060 6147 -7 21 0 0 0 chr4 134053599 134053620 -68274727 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr4 134053843 134053876 -68274471 + (T)n Simple_repeat Simple_repeat 1 33 0 1954 143 41 41 chr4 134054120 134054483 -68273864 + THE1B LTR MaLR 2 364 0 1867 131 4 7 chr4 134054794 134055068 -68273279 - AluSq SINE Alu -39 274 2 248 208 19 38 chr4 134057006 134057112 -68271235 + (TA)n Simple_repeat Simple_repeat 1 104 0 9293 232 44 26 chr4 134057124 134057300 -68271047 - L1MC3 LINE L1 -20 7765 7594 2221 111 23 11 chr4 134057300 134057651 -68270696 - THE1A LTR MaLR 0 355 1 9293 232 44 26 chr4 134057651 134058038 -68270309 - L1MC3 LINE L1 -191 7594 7216 2276 73 0 13 chr4 134058038 134058338 -68270009 - AluY SINE Alu -15 296 1 9293 232 44 26 chr4 134058338 134060145 -68268202 - L1MC3 LINE L1 -569 7216 5296 2161 126 0 0 chr4 134060145 134060446 -68267901 - AluSx SINE Alu -11 301 1 9293 232 44 26 chr4 134060446 134061446 -68266901 - L1MC3 LINE L1 -2489 5296 4316 14028 160 30 15 chr4 134061469 134067666 -68260681 - L1MA3 LINE L1 0 7724 1434 201 327 96 10 chr4 134068458 134068562 -68259785 + MIR SINE MIR 84 196 -66 1544 118 173 46 chr4 134069143 134069316 -68259031 + THE1B LTR MaLR 1 151 -213 2508 76 0 0 chr4 134069316 134069618 -68258729 + AluSq SINE Alu 1 302 -11 1544 118 173 46 chr4 134069618 134069767 -68258580 + THE1B LTR MaLR 151 364 0 389 267 146 50 chr4 134070085 134070325 -68258022 + L1ME LINE L1 738 1000 -5070 2319 107 0 0 chr4 134070612 134070921 -68257426 - AluSc SINE Alu 0 309 1 28 29 0 0 chr4 134072453 134072488 -68255859 + AT_rich Low_complexity Low_complexity 1 35 0 670 247 23 46 chr4 134073188 134073451 -68254896 - L1MD3 LINE L1 -9 7986 7730 2428 72 0 0 chr4 134074165 134074458 -68253889 + AluY SINE Alu 10 302 -9 275 326 22 11 chr4 134074477 134074569 -68253778 - L2 LINE L2 -2032 1282 1190 1673 290 64 19 chr4 134074612 134075634 -68252713 - L1ME3A LINE L1 -29 6141 4976 466 366 17 17 chr4 134075677 134075909 -68252438 - L2 LINE L2 -2356 958 727 247 250 33 0 chr4 134077452 134077512 -68250835 + L2 LINE L2 3179 3240 -73 3598 94 26 4 chr4 134078521 134079021 -68249326 + MER9 LTR ERVK 1 511 0 4002 93 5 24 chr4 134079021 134079600 -68248747 + HERVK9 LTR ERVK 1 568 -5348 * 8263 72 1 1 chr4 134079598 134080644 -68247703 + HERVK9 LTR ERVK 1424 2469 -3447 1061 46 15 0 chr4 134080643 134080774 -68247573 + HERVK9 LTR ERVK 2654 2786 -3130 * 3032 49 5 0 chr4 134080774 134081141 -68247206 + HERVK9 LTR ERVK 3711 4079 -1837 * 6541 90 5 1 chr4 134081139 134082013 -68246334 + HERVK9 LTR ERVK 4758 5634 -282 2044 97 11 4 chr4 134082109 134082387 -68245960 + HERVK9 LTR ERVK 5635 5914 -2 3620 98 2 15 chr4 134082389 134082907 -68245440 + MER9 LTR ERVK 1 511 0 1968 141 41 24 chr4 134083044 134083413 -68244934 + THE1C LTR MaLR 1 375 0 2451 80 0 0 chr4 134083700 134084001 -68244346 + AluY SINE Alu 1 301 -10 407 279 81 12 chr4 134084098 134084259 -68244088 - MLT1J LTR MaLR 0 511 340 286 356 46 38 chr4 134084469 134084708 -68243639 - MLT1J LTR MaLR -266 245 5 22 0 0 0 chr4 134087034 134087056 -68241291 + AT_rich Low_complexity Low_complexity 1 22 0 2344 80 0 0 chr4 134087104 134087403 -68240944 - AluY SINE Alu -12 299 1 22 56 0 0 chr4 134087519 134087555 -68240792 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr4 134087680 134087713 -68240634 + AT_rich Low_complexity Low_complexity 1 33 0 348 24 0 0 chr4 134087757 134087798 -68240549 + (CA)n Simple_repeat Simple_repeat 2 42 0 504 289 31 23 chr4 134087926 134088119 -68240228 + MIR SINE MIR 10 206 -56 24 53 0 0 chr4 134088200 134088238 -68240109 + AT_rich Low_complexity Low_complexity 1 38 0 29 28 0 0 chr4 134088551 134088587 -68239760 + AT_rich Low_complexity Low_complexity 1 36 0 259 352 0 0 chr4 134090679 134090750 -68237597 - L2 LINE L2 -1 3271 3201 339 285 70 82 chr4 134091592 134091862 -68236485 + HAL1 LINE L1 744 1010 -1497 269 377 86 35 chr4 134092150 134092810 -68235537 + L2 LINE L2 2284 2977 -337 2495 107 60 21 chr4 134092954 134093385 -68234962 - LTR7 LTR ERV1 -2 448 1 2549 68 45 24 chr4 134093385 134093767 -68234580 - HERVH LTR ERV1 0 7713 7324 1251 119 25 0 chr4 134093769 134093970 -68234377 - HERVH LTR ERV1 -1896 5817 5612 2881 130 2 24 chr4 134093977 134094608 -68233739 - HERVH LTR ERV1 -2564 5149 4488 3394 99 4 4 chr4 134094610 134095104 -68233243 - HERVH LTR ERV1 -3720 3993 3500 * 16297 97 33 13 chr4 134095103 134097691 -68230656 - HERVH LTR ERV1 -4423 3290 486 1497 94 9 0 chr4 134097659 134097882 -68230465 - HERVH LTR ERV1 -7488 225 1 * 2477 108 65 19 chr4 134097884 134098312 -68230035 - LTR7 LTR ERV1 -2 448 1 21 57 0 0 chr4 134098558 134098593 -68229754 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr4 134098860 134098898 -68229449 + AT_rich Low_complexity Low_complexity 1 38 0 1877 260 63 41 chr4 134099043 134100058 -68228289 - L1ME1 LINE L1 0 6166 5127 1764 219 103 28 chr4 134100109 134100545 -68227802 + MLT2B1 LTR ERVL 1 471 -49 9402 166 33 8 chr4 134100545 134102201 -68226146 + Tigger1 DNA MER2_type 2 1697 -721 655 242 0 31 chr4 134102198 134102359 -68225988 + Tigger1 DNA MER2_type 2263 2418 0 * 213 65 0 0 chr4 134102382 134102413 -68225934 + (CA)n Simple_repeat Simple_repeat 2 32 0 838 261 104 90 chr4 134102505 134103876 -68224471 - L1ME1 LINE L1 -2130 4016 2627 5700 126 47 110 chr4 134104050 134105276 -68223071 - THE1B-int LTR MaLR -483 1198 2 2043 166 31 0 chr4 134105280 134105629 -68222718 - THE1B LTR MaLR -2 362 3 297 0 0 0 chr4 134105806 134105839 -68222508 + (TG)n Simple_repeat Simple_repeat 2 34 0 180 125 0 0 chr4 134106401 134106433 -68221914 + (CAGAGA)n Simple_repeat Simple_repeat 2 33 0 191 384 27 0 chr4 134107645 134107718 -68220629 + L2 LINE L2 3169 3243 -29 346 130 0 0 chr4 134107753 134107799 -68220548 + AluSp SINE Alu 130 175 -128 243 0 0 0 chr4 134107840 134107867 -68220480 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr4 134108196 134108224 -68220123 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr4 134108390 134108425 -68219922 + AT_rich Low_complexity Low_complexity 1 35 0 2372 73 0 22 chr4 134108780 134109097 -68219250 + AluY SINE Alu 1 310 -1 1792 166 42 16 chr4 134109305 134109827 -68218520 - L1M1 LINE L1 -749 5397 4980 1875 164 61 37 chr4 134109828 134110393 -68217954 + L1MA3 LINE L1 5519 6305 0 292 333 0 9 chr4 134110960 134111068 -68217279 + GA-rich Low_complexity Low_complexity 4 110 0 12075 44 1 1 chr4 134111687 134113945 -68214402 - L1PA5 LINE L1 -5 6149 3890 9879 221 36 4 chr4 134114685 134117447 -68210900 + L1PB2 LINE L1 2966 5843 -308 269 89 22 0 chr4 134117447 134117492 -68210855 + (TA)n Simple_repeat Simple_repeat 1 46 0 9879 221 36 4 chr4 134117492 134117791 -68210556 + L1PB2 LINE L1 5843 6131 -20 417 225 43 91 chr4 134117810 134117997 -68210350 + HsTC2 DNA Tc2 1183 1360 -538 693 236 83 51 chr4 134118001 134118315 -68210032 + HsTC2 DNA Tc2 1558 1881 -17 203 280 122 37 chr4 134118386 134118493 -68209854 - L2 LINE L2 -8 3305 3190 2118 131 0 25 chr4 134119091 134119405 -68208942 - AluSx SINE Alu -6 306 1 21 57 0 0 chr4 134119685 134119720 -68208627 + AT_rich Low_complexity Low_complexity 1 35 0 614 239 31 28 chr4 134119757 134119974 -68208373 - MER61D LTR ERV1 -14 750 338 23 54 0 0 chr4 134120526 134120563 -68207784 + AT_rich Low_complexity Low_complexity 1 37 0 28 0 0 0 chr4 134121585 134121613 -68206734 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr4 134121883 134121919 -68206428 + AT_rich Low_complexity Low_complexity 1 36 0 22 80 0 0 chr4 134121932 134121982 -68206365 + AT_rich Low_complexity Low_complexity 1 50 0 1882 88 15 4 chr4 134123029 134123301 -68205046 - L1MA3 LINE L1 -1 6304 6030 26 0 0 0 chr4 134124328 134124354 -68203993 + AT_rich Low_complexity Low_complexity 1 26 0 1818 80 36 43 chr4 134124354 134124630 -68203717 - AluY SINE Alu -16 295 22 244 354 105 56 chr4 134124641 134125014 -68203333 + L2 LINE L2 2461 2851 -463 296 351 147 27 chr4 134125067 134125474 -68202873 + L2 LINE L2 2849 3304 -9 30 0 0 0 chr4 134125680 134125710 -68202637 + AT_rich Low_complexity Low_complexity 1 30 0 329 355 82 26 chr4 134126348 134126579 -68201768 + MIR SINE MIR 19 262 0 25 75 0 0 chr4 134126857 134126910 -68201437 + AT_rich Low_complexity Low_complexity 1 53 0 21 82 0 0 chr4 134126964 134127013 -68201334 + AT_rich Low_complexity Low_complexity 1 49 0 2194 67 39 7 chr4 134127458 134127740 -68200607 - AluY SINE Alu -20 291 1 2063 117 7 0 chr4 134127923 134128214 -68200133 + AluSx SINE Alu 1 293 -19 927 184 43 5 chr4 134129056 134129241 -68199106 + L1PA15 LINE L1 5974 6165 0 21 36 0 0 chr4 134129469 134129497 -68198850 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 134129955 134129977 -68198370 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr4 134130916 134130938 -68197409 + (TA)n Simple_repeat Simple_repeat 2 23 0 195 271 21 21 chr4 134131037 134131085 -68197262 - L2 LINE L2 0 3272 3225 21 71 0 0 chr4 134133323 134133365 -68194982 + AT_rich Low_complexity Low_complexity 1 42 0 23 68 0 0 chr4 134133408 134133452 -68194895 + AT_rich Low_complexity Low_complexity 1 44 0 2266 95 0 0 chr4 134133525 134133808 -68194539 + AluSc SINE Alu 1 283 -26 230 341 12 12 chr4 134134304 134134389 -68193958 - L3 LINE CR1 -151 1426 1342 393 373 21 0 chr4 134134435 134134577 -68193770 - L3 LINE CR1 -418 1159 1015 204 67 0 0 chr4 134134854 134134884 -68193463 + (CTATA)n Simple_repeat Simple_repeat 4 33 0 22 35 0 0 chr4 134134930 134134959 -68193388 + AT_rich Low_complexity Low_complexity 1 29 0 228 314 50 41 chr4 134136834 134136955 -68191392 + L2 LINE L2 2527 2648 -666 1566 259 102 16 chr4 134136956 134137466 -68190881 - MLT2B3 LTR ERVL 0 554 1 38922 111 17 14 chr4 134137466 134141954 -68186393 - HERVL-B3-A2 LTR ERVL 0 5654 1183 2204 94 7 0 chr4 134141954 134142241 -68186106 - AluSp SINE Alu -24 289 1 38922 111 17 14 chr4 134142241 134143064 -68185283 - HERVL-B3-A2 LTR ERVL -4471 1183 320 3015 179 39 49 chr4 134143064 134143762 -68184585 + LTR8 LTR ERV1 1 691 0 38922 111 17 14 chr4 134143762 134144083 -68184264 - HERVL-B3-A2 LTR ERVL -5334 320 2 2043 159 46 38 chr4 134144085 134144632 -68183715 - MLT2A2 LTR ERVL -1 553 1 237 314 0 95 chr4 134144804 134144941 -68183406 + L2 LINE L2 2858 2981 -291 335 227 165 65 chr4 134144981 134145210 -68183137 - L1ME4a LINE L1 -265 5856 5603 2179 71 0 0 chr4 134145210 134145490 -68182857 - L1PA5 LINE L1 0 6154 5875 335 227 165 65 chr4 134145490 134145504 -68182843 - L1ME4a LINE L1 -518 5603 5592 241 338 67 13 chr4 134145582 134145807 -68182540 + L2 LINE L2 3075 3311 -2 224 330 52 52 chr4 134146632 134146763 -68181584 - MIR SINE MIR -44 218 85 1867 177 135 3 chr4 134146763 134147141 -68181206 - MSTA LTR MaLR 0 428 1 224 330 52 52 chr4 134147141 134147200 -68181147 - MIR SINE MIR -176 86 28 3626 240 10 83 chr4 134147477 134148783 -68179564 - L1 LINE L1 -981 5165 3955 1999 245 120 28 chr4 134148779 134149669 -68178678 - L1MCa LINE L1 -5125 920 3 * 318 337 101 47 chr4 134150678 134150975 -68177372 + L2 LINE L2 2578 2890 -424 501 245 42 99 chr4 134151098 134151310 -68177037 - MER52A LTR ERV1 -204 1551 1352 3794 134 60 67 chr4 134151332 134152717 -68175630 - pTR5 LTR ERV1 0 2438 66 260 292 0 0 chr4 134152893 134152958 -68175389 - MER52A LTR ERV1 -408 1347 1283 845 192 98 60 chr4 134153000 134153234 -68175113 - MER52A LTR ERV1 -440 1315 1073 840 177 8 174 chr4 134153232 134153497 -68174850 - MER52A LTR ERV1 -869 886 666 * 813 228 28 33 chr4 134153893 134154075 -68174272 - MER82 DNA MER2_type 0 653 471 2330 128 11 19 chr4 134154075 134154441 -68173906 - THE1B LTR MaLR -1 363 1 813 228 28 33 chr4 134154441 134154469 -68173878 - MER82 DNA MER2_type -182 471 444 236 380 35 9 chr4 134154529 134154642 -68173705 + MIR SINE MIR 31 146 -116 263 282 35 0 chr4 134154771 134154856 -68173491 - MER82 DNA MER2_type -555 98 11 22 0 0 0 chr4 134154871 134154893 -68173454 + AT_rich Low_complexity Low_complexity 1 22 0 205 305 76 29 chr4 134155255 134155360 -68172987 + MIR SINE MIR 83 192 -70 14277 90 7 1 chr4 134155642 134158416 -68169931 - L1PA7 LINE L1 -1 6153 3367 821 279 51 69 chr4 134158569 134158780 -68169567 + MLT1J LTR MaLR 69 282 -229 3196 240 77 41 chr4 134158780 134159642 -68168705 + MER45B DNA AcHobo 5 909 -672 1600 195 34 0 chr4 134159642 134159940 -68168407 + AluJb SINE Alu 1 308 -4 3196 240 77 41 chr4 134159940 134160077 -68168270 + MER45B DNA AcHobo 909 1040 0 821 279 51 69 chr4 134160077 134160316 -68168031 + MLT1J LTR MaLR 282 511 0 360 273 115 30 chr4 134161842 134162007 -68166340 - MIR SINE MIR -10 252 74 23 0 0 0 chr4 134164232 134164255 -68164092 + AT_rich Low_complexity Low_complexity 1 23 0 251 200 0 0 chr4 134164785 134164835 -68163512 - MIR SINE MIR -1 261 212 204 125 0 0 chr4 134165977 134166009 -68162338 + (A)n Simple_repeat Simple_repeat 1 32 0 2340 93 0 3 chr4 134166215 134166516 -68161831 + AluSq SINE Alu 1 300 -13 208 143 29 0 chr4 134166565 134166600 -68161747 - MIR SINE MIR -10 252 217 1413 184 170 14 chr4 134167689 134168119 -68160228 - LTR54B LTR ERV1 -1 497 1 252 396 24 8 chr4 134168256 134168395 -68159952 + MIR SINE MIR 12 151 -61 510 133 0 0 chr4 134169841 134169916 -68158431 - MLT1A1 LTR MaLR 0 365 291 8644 27 7 2 chr4 134169916 134171734 -68156613 + L1PA3 LINE L1 4340 6162 0 1557 175 3 80 chr4 134171751 134172089 -68156258 - MLT1A1 LTR MaLR -53 312 1 207 0 0 0 chr4 134172672 134172695 -68155652 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chr4 134174370 134174394 -68153953 + AT_rich Low_complexity Low_complexity 1 24 0 226 253 35 0 chr4 134175549 134175636 -68152711 + L1MC/D LINE L1 5731 5820 -1988 2206 134 24 0 chr4 134175895 134176223 -68152124 + THE1B LTR MaLR 2 337 -27 1046 231 49 40 chr4 134177413 134177742 -68150605 - MER110 LTR ERV1 -33 458 127 244 303 0 22 chr4 134177981 134178070 -68150277 + L2 LINE L2 3227 3313 0 1237 374 85 24 chr4 134178309 134178566 -68149781 - L2 LINE L2 -213 3059 2819 1644 175 47 78 chr4 134178566 134179012 -68149335 + MSTB1 LTR MaLR 1 432 0 1237 374 85 24 chr4 134179012 134179857 -68148490 - L2 LINE L2 -453 2819 1890 453 298 64 0 chr4 134181526 134181744 -68146603 - L1MEc LINE L1 -5253 1143 912 * 879 172 96 72 chr4 134181740 134181990 -68146357 + L1MA7 LINE L1 6011 6266 -25 376 345 93 31 chr4 134182018 134182792 -68145555 - L1MEc LINE L1 -5468 928 107 319 280 33 13 chr4 134182929 134183079 -68145268 - L1MEc LINE L1 -4619 2206 2054 * 875 199 82 19 chr4 134183072 134183278 -68145069 - L1MC1 LINE L1 0 6333 6115 282 286 54 36 chr4 134183267 134183335 -68145012 - L1MEc LINE L1 -4749 2076 2011 * 187 30 30 30 chr4 134183335 134183368 -68144979 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 282 286 54 36 chr4 134183368 134183467 -68144880 - L1MEc LINE L1 -4814 2011 1906 2619 153 9 32 chr4 134183482 134183666 -68144681 - MER31A LTR ERV1 0 485 298 2254 79 0 7 chr4 134183666 134183982 -68144365 + AluY SINE Alu 1 311 0 2619 153 9 32 chr4 134183982 134184261 -68144086 - MER31A LTR ERV1 -187 298 33 226 266 23 79 chr4 134184400 134184577 -68143770 - L1MEc LINE L1 -4853 1689 1523 * 351 339 93 46 chr4 134184571 134185589 -68142758 - L1MEc LINE L1 -5176 1649 584 1236 296 116 38 chr4 134185702 134186235 -68142112 + MLT1E LTR MaLR 17 591 -2 186 379 138 7 chr4 134186473 134186618 -68141729 - MIR3 SINE MIR -24 184 21 21 0 0 0 chr4 134186793 134186814 -68141533 + AT_rich Low_complexity Low_complexity 1 21 0 5696 219 32 39 chr4 134186826 134188613 -68139734 + L1MC1 LINE L1 3401 5160 -1173 1927 121 4 4 chr4 134188613 134188931 -68139416 + AluY SINE Alu 1 318 0 5696 219 32 39 chr4 134188931 134190097 -68138250 + L1MC1 LINE L1 5160 6332 -1 25 31 0 0 chr4 134190102 134190134 -68138213 + AT_rich Low_complexity Low_complexity 1 32 0 312 102 0 0 chr4 134190353 134190402 -68137945 + (TG)n Simple_repeat Simple_repeat 2 50 0 372 77 0 0 chr4 134190636 134190688 -68137659 + (CA)n Simple_repeat Simple_repeat 2 53 0 603 294 14 58 chr4 134191298 134191591 -68136756 + L2 LINE L2 3022 3301 -12 6922 164 15 17 chr4 134192348 134194686 -68133661 + L1PB1 LINE L1 3822 6150 -1 42 86 0 0 chr4 134194699 134194804 -68133543 + AT_rich Low_complexity Low_complexity 1 105 0 2270 62 3 26 chr4 134194896 134195202 -68133145 + AluY SINE Alu 13 311 0 4376 192 73 8 chr4 134195491 134196481 -68131866 - L1 LINE L1 -1780 4366 3313 2816 171 9 25 chr4 134196484 134197044 -68131303 + L1MA5 LINE L1 5744 6300 0 340 320 39 45 chr4 134197138 134197294 -68131053 - MER5A DNA MER1_type 0 189 35 21 0 0 0 chr4 134197566 134197587 -68130760 + AT_rich Low_complexity Low_complexity 1 21 0 181 365 78 9 chr4 134198059 134198174 -68130173 + MIR SINE MIR 47 169 -93 265 232 54 20 chr4 134198291 134198494 -68129853 + HAL1b LINE L1 1032 1274 -74 2939 231 20 83 chr4 134198501 134198918 -68129429 - L1MD2 LINE L1 -12 6347 5905 1601 53 0 10 chr4 134198918 134199125 -68129222 - L1PA2 LINE L1 0 6155 5951 2939 231 20 83 chr4 134199125 134199708 -68128639 - L1MD2 LINE L1 -454 5905 5410 263 200 80 0 chr4 134199708 134199783 -68128564 - LTR52 LTR ERVL -323 98 18 4380 219 26 40 chr4 134199785 134201928 -68126419 + L1MC2 LINE L1 4207 6322 -22 2261 247 77 21 chr4 134201946 134202885 -68125462 - L1MDa LINE L1 -4559 1981 991 929 99 15 0 chr4 134202979 134203110 -68125237 - LTR12 LTR ERV1 0 714 582 4367 113 81 55 chr4 134203111 134203915 -68124432 - LTR12 LTR ERV1 -1 825 1 1218 186 117 8 chr4 134206254 134206518 -68121829 + AluJo SINE Alu 3 295 -7 24 0 0 0 chr4 134206615 134206639 -68121708 + AT_rich Low_complexity Low_complexity 1 24 0 341 196 75 0 chr4 134206821 134206954 -68121393 + (TA)n Simple_repeat Simple_repeat 2 144 0 22 0 0 0 chr4 134207055 134207077 -68121270 + AT_rich Low_complexity Low_complexity 1 22 0 1640 176 0 45 chr4 134207117 134207470 -68120877 + MER44D DNA MER2_type 1 607 -2 236 259 19 0 chr4 134207504 134207558 -68120789 + (CACCAT)n Simple_repeat Simple_repeat 3 57 0 203 156 0 0 chr4 134208838 134208870 -68119477 + T-rich Low_complexity Low_complexity 4 35 0 24 96 0 0 chr4 134209158 134209231 -68119116 + AT_rich Low_complexity Low_complexity 1 73 0 216 86 0 0 chr4 134214779 134214814 -68113533 + (CA)n Simple_repeat Simple_repeat 2 36 0 193 305 19 57 chr4 134215109 134215214 -68113133 - MIR SINE MIR -117 145 45 205 343 139 40 chr4 134215798 134216072 -68112275 - L2 LINE L2 -3 3310 3010 2028 247 60 8 chr4 134217088 134217619 -68110728 + MLT1F1 LTR MaLR 1 559 -8 985 239 15 0 chr4 134218162 134218363 -68109984 - MER58A DNA MER1_type -19 205 2 2337 59 0 47 chr4 134218763 134219083 -68109264 + AluY SINE Alu 1 305 -6 866 200 50 30 chr4 134219085 134219285 -68109062 + MER82 DNA MER2_type 1 204 -449 319 324 35 29 chr4 134219375 134219545 -68108802 - Tigger2 DNA MER2_type -1508 1210 1040 1883 233 29 31 chr4 134219810 134220124 -68108223 + MER82 DNA MER2_type 203 517 -136 2193 96 3 0 chr4 134220124 134220426 -68107921 - AluSc SINE Alu -6 303 1 1883 233 29 31 chr4 134220426 134220562 -68107785 + MER82 DNA MER2_type 517 652 -1 296 179 11 42 chr4 134221000 134221095 -68107252 + (TTAAA)n Simple_repeat Simple_repeat 4 95 0 41 21 0 0 chr4 134221206 134221254 -68107093 + AT_rich Low_complexity Low_complexity 1 48 0 267 319 44 26 chr4 134221429 134221542 -68106805 + L2 LINE L2 3158 3272 0 392 237 64 71 chr4 134222458 134222691 -68105656 + L1ME3 LINE L1 5767 5997 -169 631 197 39 0 chr4 134223026 134223153 -68105194 + FLAM_C SINE Alu 2 133 0 371 242 53 68 chr4 134223462 134223594 -68104753 - MER91C DNA MER1_type 0 140 11 378 288 18 88 chr4 134225885 134226055 -68102292 - MLT1J LTR MaLR -110 401 244 219 234 0 0 chr4 134226144 134226191 -68102156 + (CA)n Simple_repeat Simple_repeat 2 48 0 333 271 55 33 chr4 134226434 134226615 -68101732 - L1MC/D LINE L1 -2516 5479 5295 283 346 80 38 chr4 134227114 134227464 -68100883 + L2 LINE L2 2683 3051 -221 42 36 0 0 chr4 134227540 134227596 -68100751 + AT_rich Low_complexity Low_complexity 1 56 0 342 0 0 0 chr4 134227641 134227679 -68100668 + (TG)n Simple_repeat Simple_repeat 2 39 0 662 148 172 0 chr4 134227771 134227893 -68100454 + L1PB4 LINE L1 6002 6144 -12 237 231 39 0 chr4 134228014 134228092 -68100255 + (TTA)n Simple_repeat Simple_repeat 1 81 0 303 291 43 26 chr4 134230924 134231041 -68097306 + MIR SINE MIR 143 261 -1 28 0 0 0 chr4 134231045 134231073 -68097274 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 134232001 134232030 -68096317 + AT_rich Low_complexity Low_complexity 1 29 0 6749 211 47 26 chr4 134232273 134233920 -68094427 + L1MC3 LINE L1 6090 7770 -15 1790 182 18 21 chr4 134234857 134235197 -68093150 + MER2 DNA MER2_type 1 339 -6 2357 264 61 44 chr4 134235522 134238075 -68090272 - L1ME1 LINE L1 -4 6162 3591 27 73 0 0 chr4 134238227 134238282 -68090065 + AT_rich Low_complexity Low_complexity 1 55 0 3370 230 52 13 chr4 134238948 134239321 -68089026 - L1MB8 LINE L1 -8 6170 5813 297 0 0 0 chr4 134239321 134239354 -68088993 + (TG)n Simple_repeat Simple_repeat 2 34 0 3370 230 52 13 chr4 134239354 134240232 -68088115 - L1MB8 LINE L1 -365 5813 4871 395 344 21 10 chr4 134240905 134241097 -68087250 + LTR67 LTR ERVL 351 544 -13 3728 102 13 2 chr4 134242533 134243083 -68085264 - L1PA13 LINE L1 -7 6156 5601 245 147 0 0 chr4 134243117 134243151 -68085196 - HAL1b LINE L1 -86 1262 1229 328 361 41 56 chr4 134244376 134244623 -68083724 - L2 LINE L2 -15 3257 3012 1824 141 4 0 chr4 134244623 134244930 -68083417 + AluSx SINE Alu 6 313 0 328 361 41 56 chr4 134244930 134244947 -68083400 - L2 LINE L2 -260 3012 2996 328 361 76 61 chr4 134245042 134245452 -68082895 - L2 LINE L2 -429 2885 2470 2031 134 0 0 chr4 134247292 134247575 -68080772 - AluSc SINE Alu -21 288 6 2170 155 16 13 chr4 134247632 134248006 -68080341 - THE1C LTR MaLR 0 375 1 8799 137 72 7 chr4 134248006 134249489 -68078858 - THE1C-int LTR MaLR 0 1580 1 2097 170 8 13 chr4 134249489 134249866 -68078481 - THE1C LTR MaLR 0 375 1 321 68 0 0 chr4 134252777 134252821 -68075526 + (CA)n Simple_repeat Simple_repeat 1 44 0 40 49 0 0 chr4 134253084 134253145 -68075202 + AT_rich Low_complexity Low_complexity 1 61 0 1268 173 19 117 chr4 134255364 134255727 -68072620 + AluSx SINE Alu 1 331 0 26 50 0 0 chr4 134256546 134256586 -68071761 + AT_rich Low_complexity Low_complexity 1 40 0 2897 256 22 4 chr4 134256592 134257374 -68070973 - L1P LINE L1 -3416 2730 1935 1249 247 12 7 chr4 134257378 134257783 -68070564 + L1 LINE L1 2800 3206 -2940 4209 87 5 0 chr4 134258052 134258629 -68069718 + L1P LINE L1 4029 4608 -1538 29 28 0 0 chr4 134258631 134258667 -68069680 + AT_rich Low_complexity Low_complexity 1 36 0 457 174 0 35 chr4 134259100 134259186 -68069161 - FRAM SINE Alu -59 117 35 431 62 0 31 chr4 134259186 134259250 -68069097 - MADE1 DNA Mariner 0 80 19 24 0 0 0 chr4 134259710 134259734 -68068613 + AT_rich Low_complexity Low_complexity 1 24 0 581 243 12 12 chr4 134259819 134259988 -68068359 - L1 LINE L1 -1508 4638 4470 * 3663 184 13 24 chr4 134259969 134260450 -68067897 + L1P5 LINE L1 4587 5051 -1105 1753 185 3 0 chr4 134260450 134260752 -68067595 + AluJb SINE Alu 1 303 -9 3663 184 13 24 chr4 134260752 134261217 -68067130 + L1P5 LINE L1 5051 5519 -637 2010 156 42 28 chr4 134261260 134261613 -68066734 - THE1B LTR MaLR -6 358 1 979 164 58 112 chr4 134261613 134261925 -68066422 + L1P5 LINE L1 5522 5816 -340 470 248 32 6 chr4 134262031 134262281 -68066066 + Charlie4 DNA MER1_type 159 1905 -56 512 253 55 39 chr4 134263019 134263201 -68065146 + MIR SINE MIR 72 256 -6 26 50 0 0 chr4 134263970 134264010 -68064337 + AT_rich Low_complexity Low_complexity 1 40 0 24 67 0 0 chr4 134266310 134266355 -68061992 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr4 134266634 134266664 -68061683 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr4 134266824 134266866 -68061481 + AT_rich Low_complexity Low_complexity 1 42 0 330 318 164 33 chr4 134267436 134267735 -68060612 + L3 LINE CR1 1041 1378 -199 1584 209 38 0 chr4 134267786 134268102 -68060245 + Tigger1 DNA MER2_type 2 329 -2089 1443 98 15 0 chr4 134268103 134268307 -68060040 + Tigger1 DNA MER2_type 1538 1744 -674 892 346 140 23 chr4 134268416 134269250 -68059097 + L2 LINE L2 2070 3012 -260 367 324 109 25 chr4 134270844 134271119 -68057228 + L2 LINE L2 2971 3268 -45 2769 256 63 2 chr4 134271119 134271908 -68056439 + L1ME1 LINE L1 5326 6162 -4 181 208 83 0 chr4 134271915 134271963 -68056384 + L2 LINE L2 3257 3308 -5 229 167 0 45 chr4 134272120 134272186 -68056161 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 1444 303 36 52 chr4 134274113 134274665 -68053682 + MER115 DNA AcHobo 88 630 -63 28 0 0 0 chr4 134275477 134275505 -68052842 + AT_rich Low_complexity Low_complexity 1 28 0 2013 113 25 0 chr4 134275511 134275795 -68052552 + AluSx SINE Alu 1 291 -21 28 0 0 0 chr4 134279581 134279609 -68048738 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 134279960 134279988 -68048359 + AT_rich Low_complexity Low_complexity 1 28 0 252 0 0 0 chr4 134280139 134280167 -68048180 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 260 344 32 13 chr4 134281242 134281399 -68046948 + Charlie8 DNA MER1_type 74 233 -2184 206 286 32 0 chr4 134281605 134281668 -68046679 + L2 LINE L2 3246 3310 -3 1698 140 0 0 chr4 134282050 134282300 -68046047 - AluSx SINE Alu -14 298 49 529 206 40 0 chr4 134282438 134282564 -68045783 + L1MD2 LINE L1 6219 6349 -10 293 344 178 17 chr4 134282955 134283185 -68045162 + L2 LINE L2 95 361 -2953 25 51 0 0 chr4 134283752 134283791 -68044556 + AT_rich Low_complexity Low_complexity 1 39 0 1745 183 118 5 chr4 134284253 134284621 -68043726 - Tigger1 DNA MER2_type -1 2417 2007 1988 136 40 34 chr4 134284621 134284973 -68043374 + THE1B LTR MaLR 1 354 -10 754 184 83 12 chr4 134284975 134285143 -68043204 - Tigger1 DNA MER2_type -406 2012 1833 308 267 38 19 chr4 134285373 134285478 -68042869 - L1ME LINE L1 -404 5717 5611 484 241 62 12 chr4 134285713 134285875 -68042472 + LTR65 LTR ERV1 1 170 -499 495 288 77 84 chr4 134286472 134286795 -68041552 + L2 LINE L2 2289 2609 -705 26 30 0 0 chr4 134286850 134286883 -68041464 + AT_rich Low_complexity Low_complexity 1 33 0 215 278 206 0 chr4 134286932 134287029 -68041318 - L2 LINE L2 -20 3252 3136 25 0 0 0 chr4 134287085 134287110 -68041237 + AT_rich Low_complexity Low_complexity 1 25 0 1831 234 16 14 chr4 134287133 134287564 -68040783 + MER69 DNA AcHobo 33 464 -762 659 278 107 3 chr4 134287561 134287888 -68040459 + MER69 DNA AcHobo 2002 2362 -164 * 5140 176 27 16 chr4 134288645 134289670 -68038677 + L1MA7 LINE L1 5255 6291 0 212 133 44 0 chr4 134291310 134291355 -68036992 + (TA)n Simple_repeat Simple_repeat 2 48 0 1844 148 67 22 chr4 134291748 134292107 -68036240 - THE1C LTR MaLR 0 375 1 3545 231 35 24 chr4 134292537 134294161 -68034186 - L1MC/D LINE L1 -477 5765 4124 2119 224 23 0 chr4 134294174 134294602 -68033745 + MLT2B1 LTR ERVL 9 446 -74 342 0 0 0 chr4 134294602 134294640 -68033707 + (CA)n Simple_repeat Simple_repeat 2 39 0 28 0 0 0 chr4 134294691 134294719 -68033628 + AT_rich Low_complexity Low_complexity 1 28 0 514 284 82 18 chr4 134294719 134294995 -68033352 - L1M4 LINE L1 -2240 3906 3623 323 227 151 49 chr4 134295071 134295256 -68033091 - MER5C DNA MER1_type 0 324 121 * 404 329 53 6 chr4 134295245 134295415 -68032932 + L2 LINE L2 2559 2736 -578 1308 85 0 0 chr4 134295436 134295601 -68032746 + AluY SINE Alu 1 165 -146 766 315 55 27 chr4 134295611 134296139 -68032208 + L2 LINE L2 2764 3313 0 1903 129 28 0 chr4 134296222 134296508 -68031839 - AluSg SINE Alu -14 296 3 315 263 10 0 chr4 134296648 134296747 -68031600 + GA-rich Low_complexity Low_complexity 3 102 0 242 179 18 0 chr4 134297150 134297206 -68031141 + GA-rich Low_complexity Low_complexity 1 57 0 350 89 0 18 chr4 134297207 134297263 -68031084 + (GGGGA)n Simple_repeat Simple_repeat 5 59 0 381 225 291 6 chr4 134297486 134297668 -68030679 - MIR SINE MIR -28 234 1 912 290 99 52 chr4 134299438 134300113 -68028234 + MER20B DNA MER1_type 77 783 0 1531 34 0 0 chr4 134300243 134300421 -68027926 - AluY SINE Alu 0 311 134 22 56 0 0 chr4 134301757 134301793 -68026554 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr4 134301823 134301852 -68026495 + AT_rich Low_complexity Low_complexity 1 29 0 1099 292 85 41 chr4 134301858 134302074 -68026273 + L1MEc LINE L1 484 689 -5424 2070 119 7 3 chr4 134302074 134302384 -68025963 + AluSp SINE Alu 3 313 0 1099 292 85 41 chr4 134302384 134303084 -68025263 + L1MEc LINE L1 689 1281 -4832 1187 299 31 3 chr4 134303106 134303505 -68024842 + L1ME2 LINE L1 5473 5872 -292 398 249 86 67 chr4 134303509 134303718 -68024629 + L1MA10 LINE L1 6115 6327 -7 2716 231 35 17 chr4 134303733 134304446 -68023901 + L1ME1 LINE L1 5436 6161 -5 26 0 0 0 chr4 134306097 134306123 -68022224 + AT_rich Low_complexity Low_complexity 1 26 0 189 0 0 0 chr4 134306182 134306203 -68022144 + (TC)n Simple_repeat Simple_repeat 2 22 0 252 0 0 0 chr4 134306204 134306232 -68022115 + (TG)n Simple_repeat Simple_repeat 2 29 0 1192 67 0 0 chr4 134306557 134306706 -68021641 - AluY SINE Alu -8 303 155 533 267 58 74 chr4 134307624 134308052 -68020295 - MLT1G LTR MaLR -5 537 88 263 394 115 6 chr4 134308408 134308573 -68019774 - MIR SINE MIR -51 211 29 652 275 67 19 chr4 134308609 134308878 -68019469 - MER113 DNA MER1_type? -43 478 197 1782 114 43 0 chr4 134308907 134309162 -68019185 - AluSg SINE Alu -11 299 34 23 33 0 0 chr4 134311259 134311289 -68017058 + AT_rich Low_complexity Low_complexity 1 30 0 459 286 117 29 chr4 134311750 134312092 -68016255 - MER113 DNA MER1_type? -120 401 30 1949 114 4 0 chr4 134312320 134312591 -68015756 - AluSp SINE Alu -5 308 37 3136 143 65 16 chr4 134313941 134314522 -68013825 + MER4B LTR ERV1 1 610 0 2325 164 5 0 chr4 134315074 134315464 -68012883 + MER41E LTR ERV1 113 504 -8 5708 56 42 13 chr4 134315925 134316681 -68011666 + LTR17 LTR ERV1 3 780 0 2531 53 0 3 chr4 134318157 134318461 -68009886 - AluY SINE Alu -8 303 1 1180 220 75 23 chr4 134319451 134319796 -68008551 + MLT1A1 LTR MaLR 1 363 -2 22 35 0 0 chr4 134320276 134320305 -68008042 + AT_rich Low_complexity Low_complexity 1 29 0 201 121 0 0 chr4 134320708 134320741 -68007606 + (CA)n Simple_repeat Simple_repeat 2 34 0 203 59 0 29 chr4 134322684 134322718 -68005629 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 221 333 105 31 chr4 134324068 134324230 -68004117 + MIR3 SINE MIR 18 191 -17 362 328 64 26 chr4 134324424 134324968 -68003379 - L1ME3A LINE L1 -296 5874 5310 28 0 0 0 chr4 134325096 134325124 -68003223 + AT_rich Low_complexity Low_complexity 1 28 0 29291 57 4 1 chr4 134325124 134328880 -67999467 - L1P LINE L1 -1738 4408 640 674 275 108 58 chr4 134330633 134331116 -67997231 - MLT1J LTR MaLR -4 507 1 25 31 0 0 chr4 134332428 134332460 -67995887 + AT_rich Low_complexity Low_complexity 1 32 0 206 286 45 68 chr4 134332518 134332651 -67995696 + MIR SINE MIR 77 206 -56 206 263 12 12 chr4 134332710 134332790 -67995557 + (TTA)n Simple_repeat Simple_repeat 1 80 0 1506 154 42 84 chr4 134333575 134333687 -67994660 + L1 LINE L1 4075 4190 -1956 1645 164 34 0 chr4 134333687 134333955 -67994392 + AluJb SINE Alu 3 279 -33 491 102 11 0 chr4 134333955 134334043 -67994304 + (CA)n Simple_repeat Simple_repeat 1 89 0 1506 154 42 84 chr4 134334043 134334312 -67994035 + L1 LINE L1 4188 4441 -1705 282 235 15 0 chr4 134334728 134334796 -67993551 + (TATG)n Simple_repeat Simple_repeat 4 72 0 190 73 49 0 chr4 134335118 134335159 -67993188 + (TG)n Simple_repeat Simple_repeat 2 44 0 10412 206 8 13 chr4 134337077 134340517 -67987830 - L1MA3 LINE L1 0 7724 4329 1072 116 17 12 chr4 134340572 134340745 -67987602 - LTR56 LTR ERV1 -270 175 2 2536 201 36 20 chr4 134340773 134341744 -67986603 - L1MA3 LINE L1 -3264 4301 3314 8875 189 32 41 chr4 134341744 134344260 -67984087 - L1MA3 LINE L1 -4683 2882 14 188 130 22 0 chr4 134346014 134346060 -67982287 + (TA)n Simple_repeat Simple_repeat 2 48 0 29 47 0 0 chr4 134346800 134346843 -67981504 + AT_rich Low_complexity Low_complexity 1 43 0 438 333 32 28 chr4 134346845 134347061 -67981286 - MIR SINE MIR -43 219 3 21 0 0 0 chr4 134347843 134347864 -67980483 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4 134348062 134348093 -67980254 + AT_rich Low_complexity Low_complexity 1 31 0 445 280 77 25 chr4 134348298 134348501 -67979846 - L1ME2 LINE L1 -6 6160 5950 753 292 65 14 chr4 134348515 134348868 -67979479 - L1ME2 LINE L1 -1144 5002 4632 682 185 60 7 chr4 134348884 134349035 -67979312 + L1MB3 LINE L1 6014 6172 -11 2029 164 7 36 chr4 134349052 134349466 -67978881 + L1MB7 LINE L1 5754 6155 -29 972 242 118 48 chr4 134349570 134350197 -67978150 - L1ME2 LINE L1 -1671 4475 3805 2018 214 3 3 chr4 134351431 134351795 -67976552 + L1PB4 LINE L1 659 1022 -5827 12475 218 35 17 chr4 134351795 134356357 -67971990 + L1PA15-16 LINE L1 688 5367 -1482 8881 206 21 54 chr4 134356367 134356952 -67971395 + L1PB4 LINE L1 3622 4225 -2624 198 0 0 0 chr4 134356952 134356974 -67971373 + (CA)n Simple_repeat Simple_repeat 2 23 0 8881 206 21 54 chr4 134356974 134357220 -67971127 + L1PB4 LINE L1 4225 4478 -2371 1661 152 8 0 chr4 134357220 134357476 -67970871 + AluJo SINE Alu 1 258 -54 8881 206 21 54 chr4 134357476 134359114 -67969233 + L1PB4 LINE L1 4478 6011 -838 6015 99 6 33 chr4 134359134 134359217 -67969130 + L1PA10 LINE L1 5254 5338 -830 1904 117 0 34 chr4 134359217 134359555 -67968792 + AluSc SINE Alu 1 328 0 6015 99 6 33 chr4 134359555 134360408 -67967939 + L1PA10 LINE L1 5338 6166 -2 3949 147 14 24 chr4 134360402 134360774 -67967573 + L1PB4 LINE L1 6020 6382 -477 * 2068 100 45 0 chr4 134360774 134361064 -67967283 + AluSx SINE Alu 1 303 -9 3949 147 14 24 chr4 134361064 134361434 -67966913 + L1PB4 LINE L1 6382 6754 -105 35 71 0 0 chr4 134362641 134362711 -67965636 + AT_rich Low_complexity Low_complexity 1 70 0 3238 193 25 16 chr4 134363005 134363737 -67964610 - L1MB2 LINE L1 0 7233 6496 332 316 102 23 chr4 134363756 134363933 -67964414 - L1MC/D LINE L1 -2016 5792 5602 26 64 0 0 chr4 134363944 134363991 -67964356 + AT_rich Low_complexity Low_complexity 1 47 0 26 50 0 0 chr4 134364446 134364486 -67963861 + AT_rich Low_complexity Low_complexity 1 40 0 8026 228 40 24 chr4 134364487 134368192 -67960155 - L1MB2 LINE L1 -2295 4913 1151 390 290 92 34 chr4 134368250 134368457 -67959890 - L1MB2 LINE L1 -5838 1371 1153 29 28 0 0 chr4 134369724 134369760 -67958587 + AT_rich Low_complexity Low_complexity 1 36 0 2729 208 34 5 chr4 134369955 134370571 -67957776 - L1 LINE L1 -1063 5083 4450 1550 167 52 52 chr4 134370572 134370902 -67957445 + MER2 DNA MER2_type 2 331 -14 798 158 37 85 chr4 134370914 134371160 -67957187 - L1 LINE L1 -1693 4453 4220 * 3507 155 47 9 chr4 134371159 134371387 -67956960 + L1MA7 LINE L1 5285 5503 -788 1836 190 80 10 chr4 134371387 134371787 -67956560 + MSTA LTR MaLR 1 428 0 3507 155 47 9 chr4 134371787 134372359 -67955988 + L1MA7 LINE L1 5503 6289 -2 26 0 0 0 chr4 134372373 134372399 -67955948 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr4 134372457 134372500 -67955847 + AT_rich Low_complexity Low_complexity 1 43 0 7028 99 9 11 chr4 134372973 134374025 -67954322 - L1MA2 LINE L1 0 6304 5254 25 0 0 0 chr4 134374139 134374164 -67954183 + AT_rich Low_complexity Low_complexity 1 25 0 297 0 0 0 chr4 134375284 134375317 -67953030 + (CA)n Simple_repeat Simple_repeat 2 34 0 301 240 0 0 chr4 134375507 134375557 -67952790 + MER66A LTR ERV1 287 336 -142 1171 182 50 95 chr4 134375748 134376105 -67952242 + MLT2C1 LTR ERVL 57 397 0 4153 213 46 14 chr4 134376183 134377999 -67950348 + L1MB7 LINE L1 4276 6169 -15 2046 142 49 56 chr4 134378030 134378459 -67949888 - MSTA LTR MaLR -2 426 1 22 35 0 0 chr4 134378529 134378558 -67949789 + AT_rich Low_complexity Low_complexity 1 29 0 638 202 50 0 chr4 134378726 134378845 -67949502 - MER74A LTR ERVL 0 558 434 1459 259 34 18 chr4 134378962 134379344 -67949003 - MER74A LTR ERVL -136 422 35 288 0 0 0 chr4 134381225 134381257 -67947090 + (TC)n Simple_repeat Simple_repeat 2 33 0 * 333 0 0 0 chr4 134381256 134381293 -67947054 + (TG)n Simple_repeat Simple_repeat 2 38 0 2237 98 3 0 chr4 134381444 134381741 -67946606 + AluSx SINE Alu 1 298 -14 262 308 138 6 chr4 134382143 134382302 -67946045 - MIR SINE MIR -13 249 70 23 0 0 0 chr4 134383168 134383191 -67945156 + AT_rich Low_complexity Low_complexity 1 23 0 4639 159 27 18 chr4 134383318 134383619 -67944728 - L1MB1 LINE L1 -5 6163 5866 2281 92 7 0 chr4 134383619 134383913 -67944434 + AluSq SINE Alu 1 296 -17 4639 159 27 18 chr4 134383913 134384451 -67943896 - L1MB1 LINE L1 -302 5866 5316 617 144 0 19 chr4 134384455 134384559 -67943788 - FLAM_C SINE Alu -16 127 26 591 221 35 56 chr4 134384569 134384800 -67943547 - L1MB1 LINE L1 -825 5321 5096 390 308 101 13 chr4 134385810 134386037 -67942310 - L2 LINE L2 -1333 1981 1735 207 100 0 0 chr4 134386309 134386339 -67942008 + (A)n Simple_repeat Simple_repeat 1 30 0 370 260 31 0 chr4 134386362 134386458 -67941889 - MER5A DNA MER1_type -77 112 14 219 324 144 44 chr4 134386519 134386902 -67941445 - L2 LINE L2 -1897 1417 997 22 0 0 0 chr4 134388099 134388121 -67940226 + AT_rich Low_complexity Low_complexity 1 22 0 378 308 39 8 chr4 134388290 134388420 -67939927 + MIR SINE MIR 1 134 -128 503 255 90 32 chr4 134388457 134388645 -67939702 - MER67D LTR ERV1 -8 506 308 1084 205 60 85 chr4 134388693 134389010 -67939337 - MER67D LTR ERV1 -205 309 1 2123 106 3 0 chr4 134389457 134389773 -67938574 + AluSg SINE Alu 1 317 0 32 0 0 0 chr4 134390994 134391026 -67937321 + AT_rich Low_complexity Low_complexity 1 32 0 30 45 0 0 chr4 134392129 134392173 -67936174 + AT_rich Low_complexity Low_complexity 1 44 0 2390 155 19 14 chr4 134393042 134393468 -67934879 + MSTA LTR MaLR 1 428 0 277 184 0 0 chr4 134394749 134394798 -67933549 + MADE1 DNA Mariner 32 80 0 36 40 0 0 chr4 134396145 134396195 -67932152 + AT_rich Low_complexity Low_complexity 1 50 0 24 53 0 0 chr4 134396297 134396335 -67932012 + AT_rich Low_complexity Low_complexity 1 38 0 207 277 77 0 chr4 134397222 134397287 -67931060 - L2 LINE L2 0 3313 3244 400 259 34 68 chr4 134397328 134397475 -67930872 + MIR SINE MIR 59 200 -62 8684 138 41 5 chr4 134397530 134398913 -67929434 + Tigger4(Zombi) DNA MER2_type 1 1433 -1298 383 111 0 0 chr4 134398913 134398967 -67929380 - L1M2 LINE L1 -592 5720 5667 1280 176 36 131 chr4 134398980 134399549 -67928798 + L1ME LINE L1 5148 5669 -501 553 332 56 0 chr4 134399549 134399763 -67928584 - L2 LINE L2 -267 3046 2821 393 287 28 21 chr4 134399967 134400110 -67928237 + MER46C DNA MER2_type 186 329 -9 1581 147 110 0 chr4 134400113 134400386 -67927961 + AluSx SINE Alu 1 303 -9 21 57 0 0 chr4 134400572 134400607 -67927740 + AT_rich Low_complexity Low_complexity 1 35 0 1211 204 35 43 chr4 134401183 134401680 -67926667 + MLT2A2 LTR ERVL 1 548 -6 21 0 0 0 chr4 134402634 134402655 -67925692 + AT_rich Low_complexity Low_complexity 1 21 0 288 222 11 22 chr4 134404156 134404246 -67924101 - MER20B DNA MER1_type -6 777 689 574 338 39 31 chr4 134405246 134405604 -67922743 + L2 LINE L2 2953 3313 0 2984 171 14 12 chr4 134406669 134407261 -67921086 - L1MA4 LINE L1 -33 6267 5675 1098 135 5 0 chr4 134407364 134407619 -67920728 - L1MA4 LINE L1 -743 5403 5176 189 333 11 44 chr4 134407692 134407782 -67920565 + L2 LINE L2 2301 2387 -927 26 0 0 0 chr4 134408314 134408340 -67920007 + AT_rich Low_complexity Low_complexity 1 26 0 379 238 12 12 chr4 134408517 134408601 -67919746 - L2 LINE L2 -8 3305 3222 391 213 46 17 chr4 134408696 134408870 -67919477 + (TA)n Simple_repeat Simple_repeat 2 180 0 252 0 0 0 chr4 134408882 134408910 -67919437 + (CA)n Simple_repeat Simple_repeat 2 29 0 26 50 0 0 chr4 134409895 134409935 -67918412 + AT_rich Low_complexity Low_complexity 1 40 0 240 221 124 14 chr4 134410699 134410844 -67917503 + L1MDa LINE L1 1328 1488 -5052 724 212 45 56 chr4 134410990 134411188 -67917159 - MER20B DNA MER1_type -18 201 6 1259 309 32 19 chr4 134411207 134411638 -67916709 - MLT1E2 LTR MaLR -2 624 188 12851 104 8 1 chr4 134412558 134414438 -67913909 + L1PA8 LINE L1 3251 5147 -999 3907 63 8 10 chr4 134414438 134414957 -67913390 + L1PA8 LINE L1 5653 6171 -1 12851 104 8 1 chr4 134414957 134414977 -67913370 + L1PA8 LINE L1 5147 5165 -981 21 0 0 0 chr4 134415286 134415307 -67913040 + AT_rich Low_complexity Low_complexity 1 21 0 409 184 82 20 chr4 134416062 134416160 -67912187 + L1MB7 LINE L1 6037 6140 -44 2142 172 34 32 chr4 134416160 134416713 -67911634 - MLT2A2 LTR ERVL 0 554 1 24 32 0 0 chr4 134417355 134417386 -67910961 + AT_rich Low_complexity Low_complexity 1 31 0 402 301 68 39 chr4 134418104 134419029 -67909318 + L1ME LINE L1 1024 1862 -4566 3800 181 12 0 chr4 134419193 134419866 -67908481 + Tigger2 DNA MER2_type 2 682 -2036 1354 185 54 44 chr4 134419871 134420169 -67908178 + AluJo SINE Alu 1 301 -11 395 113 0 0 chr4 134420169 134420222 -67908125 + AluSg/x SINE Alu 98 150 -150 234 0 0 0 chr4 134420322 134420348 -67907999 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 255 214 89 0 chr4 134420348 134420404 -67907943 + Tigger2 DNA MER2_type 682 742 -1976 1317 180 57 0 chr4 134420472 134420716 -67907631 + Tigger2 DNA MER2_type 2461 2718 0 229 169 0 34 chr4 134420716 134420775 -67907572 + (TTATA)n Simple_repeat Simple_repeat 3 59 0 2146 126 7 0 chr4 134420828 134421129 -67907218 - AluSx SINE Alu -9 303 1 913 259 9 0 chr4 134421131 134421347 -67907000 + MER20 DNA MER1_type 2 219 0 421 279 41 68 chr4 134421362 134421599 -67906748 + L1ME LINE L1 2243 2526 -3951 534 188 133 52 chr4 134421802 134422003 -67906344 - LTR49-int LTR ERV1 -1841 4105 3962 1667 188 3 17 chr4 134422003 134422295 -67906052 + AluJb SINE Alu 1 288 -24 534 188 133 52 chr4 134422295 134422511 -67905836 - LTR49-int LTR ERV1 -1984 3962 3765 27 81 0 0 chr4 134422534 134422596 -67905751 + AT_rich Low_complexity Low_complexity 1 62 0 1456 168 60 46 chr4 134422691 134422772 -67905575 - LTR49-int LTR ERV1 -3224 3107 3029 180 0 0 0 chr4 134422772 134422792 -67905555 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1456 168 60 46 chr4 134422792 134423061 -67905286 - LTR49-int LTR ERV1 -3302 3029 2752 1950 127 52 0 chr4 134423072 134423363 -67904984 - AluSx SINE Alu -6 306 1 276 149 0 0 chr4 134423595 134423642 -67904705 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 822 316 38 15 chr4 134423922 134424188 -67904159 - LTR49-int LTR ERV1 -4152 2179 1908 1617 124 0 9 chr4 134424254 134424480 -67903867 + AluSx SINE Alu 1 224 -88 225 0 0 0 chr4 134424500 134424525 -67903822 + (A)n Simple_repeat Simple_repeat 1 25 0 3639 182 54 1 chr4 134424552 134425201 -67903146 - MER72 LTR ERV1 -35 687 5 334 279 35 0 chr4 134425210 134425296 -67903051 - LTR49-int LTR ERV1 -4554 382 294 1815 110 0 0 chr4 134426077 134426314 -67902033 + AluSp SINE Alu 50 286 -27 299 205 36 12 chr4 134426490 134426573 -67901774 - LTR49-int LTR ERV1 -4954 1377 1293 2393 186 54 98 chr4 134426646 134427372 -67900975 + LTR8A LTR ERV1 34 727 0 473 239 22 25 chr4 134427606 134427825 -67900522 - LTR49-int LTR ERV1 -5410 921 732 1129 119 12 0 chr4 134427900 134428068 -67900279 - MER50 LTR ERV1 0 734 565 1220 116 68 24 chr4 134428071 134428278 -67900069 + AluSg/x SINE Alu 93 308 -2 2871 177 16 14 chr4 134428278 134428838 -67899509 - MER50 LTR ERV1 -161 573 13 475 204 6 31 chr4 134428852 134429028 -67899319 - LTR49-int LTR ERV1 -5643 688 464 776 159 8 0 chr4 134429028 134429154 -67899193 + MLT2B1 LTR ERVL 340 466 -54 742 179 36 6 chr4 134429202 134429370 -67898977 - L1MA8 LINE L1 0 6291 6119 2472 214 146 37 chr4 134429373 134430111 -67898236 + LTR1B LTR ERV1 8 826 0 13526 179 27 31 chr4 134430220 134432954 -67895393 + HUERS-P2 LTR ERV1 75 6731 -355 1288 49 0 12 chr4 134432954 134433118 -67895229 + L1PA5 LINE L1 5980 6141 -13 341 299 86 29 chr4 134434338 134434582 -67893765 - MIR SINE MIR -1 261 4 1247 161 0 0 chr4 134435014 134435213 -67893134 - AluJb SINE Alu -113 199 1 440 369 82 56 chr4 134437323 134437735 -67890612 - L2 LINE L2 -17 3255 2833 1049 316 100 22 chr4 134438526 134439035 -67889312 - MLT2E LTR ERVL 0 628 80 1728 298 57 36 chr4 134439042 134441017 -67887330 - ERVL-E LTR ERVL -23 5741 3575 * 4016 126 186 108 chr4 134441002 134442458 -67885889 + pTR5 LTR ERV1 743 2438 0 883 296 24 24 chr4 134442574 134442865 -67885482 - ERVL-E LTR ERVL -2292 3472 3182 424 224 31 34 chr4 134442900 134443094 -67885253 + L1M3de LINE L1 1266 1777 -4526 798 282 67 41 chr4 134443257 134443601 -67884746 - LTR16A1 LTR ERVL -103 354 2 2548 139 28 21 chr4 134443710 134444133 -67884214 + MSTB LTR MaLR 1 426 0 1524 199 135 0 chr4 134444520 134444817 -67883530 - MER1B DNA MER1_type 0 337 1 1453 118 36 9 chr4 134444836 134445057 -67883290 + MER30 DNA MER1_type 4 230 0 30886 48 3 2 chr4 134445709 134450355 -67877992 + L1PA5 LINE L1 1504 6153 -1 490 316 35 59 chr4 134451300 134451636 -67876711 + L1M4 LINE L1 4349 4677 -1469 2485 24 3 0 chr4 134451636 134451932 -67876415 - L1PA4 LINE L1 0 6155 5859 490 316 35 59 chr4 134451932 134451968 -67876379 + L1M4 LINE L1 4677 4712 -1434 27 29 0 0 chr4 134452534 134452568 -67875779 + AT_rich Low_complexity Low_complexity 1 34 0 51 31 0 0 chr4 134454172 134454237 -67874110 + AT_rich Low_complexity Low_complexity 1 65 0 21 0 0 0 chr4 134454949 134454970 -67873377 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 134455344 134455368 -67872979 + AT_rich Low_complexity Low_complexity 1 24 0 325 321 9 18 chr4 134455523 134455635 -67872712 + L2 LINE L2 3199 3309 -4 6056 151 28 12 chr4 134455780 134457105 -67871242 + L1MA3 LINE L1 4961 6304 -1 2693 149 56 4 chr4 134457651 134458166 -67870181 - L1MA5 LINE L1 -5 6295 5754 2179 122 3 0 chr4 134458357 134458653 -67869694 + AluSg SINE Alu 1 297 -13 187 280 42 127 chr4 134458731 134458849 -67869498 - L2 LINE L2 -23 3249 3142 231 257 0 14 chr4 134461475 134461545 -67866802 + CT-rich Low_complexity Low_complexity 2 70 0 259 354 10 0 chr4 134461613 134461712 -67866635 - MIR3 SINE MIR -11 197 98 2036 106 13 17 chr4 134462233 134462534 -67865813 + AluSc SINE Alu 1 300 -9 23 54 0 0 chr4 134462872 134462909 -67865438 + AT_rich Low_complexity Low_complexity 1 37 0 325 340 43 5 chr4 134463492 134463701 -67864646 + L1MEc LINE L1 92 308 -6088 1774 253 123 25 chr4 134463707 134464923 -67863424 + L1MEc LINE L1 2009 3308 -2907 2483 197 38 11 chr4 134465257 134465791 -67862556 - MER44D DNA MER2_type 0 605 3 21 36 0 0 chr4 134466967 134466995 -67861352 + AT_rich Low_complexity Low_complexity 1 28 0 305 346 140 0 chr4 134467736 134467950 -67860397 - MIR SINE MIR 0 262 19 1524 309 67 2 chr4 134467994 134468548 -67859799 + MLT1G LTR MaLR 1 590 0 270 330 0 10 chr4 134468550 134468650 -67859697 + MLT1G-int LTR MaLR 4 102 -1269 6570 152 63 9 chr4 134469121 134470126 -67858221 - Tigger3b DNA MER2_type -1797 1231 283 2654 91 6 0 chr4 134470126 134470479 -67857868 - THE1A LTR MaLR 0 355 1 11602 97 5 5 chr4 134470479 134472059 -67856288 - THE1A-int LTR MaLR 0 1580 1 2677 96 0 3 chr4 134472059 134472415 -67855932 - THE1A LTR MaLR 0 355 1 6570 152 63 9 chr4 134472415 134472573 -67855774 - Tigger3b DNA MER2_type -2744 284 2 328 291 0 101 chr4 134473025 134473204 -67855143 + MLT1G-int LTR MaLR 1023 1183 -188 870 273 55 8 chr4 134473394 134473650 -67854697 + MLT1G LTR MaLR 2 269 -321 1948 115 39 7 chr4 134473658 134473944 -67854403 + AluSx SINE Alu 1 295 -17 1126 158 0 0 chr4 134474040 134474211 -67854136 - AluSg/x SINE Alu -22 288 118 2067 134 42 39 chr4 134474593 134474952 -67853395 - THE1B LTR MaLR -4 360 1 254 289 0 11 chr4 134475149 134475232 -67853115 - L1MC4 LINE L1 -1339 6703 6620 2044 151 61 38 chr4 134475232 134475656 -67852691 + Tigger2a DNA MER2_type 1 434 0 25 0 0 0 chr4 134476300 134476325 -67852022 + AT_rich Low_complexity Low_complexity 1 25 0 260 186 57 14 chr4 134477424 134477494 -67850853 + MER117 DNA MER1_type 16 88 -109 203 269 0 0 chr4 134477604 134477656 -67850691 + MIR3 SINE MIR 157 208 0 298 247 94 0 chr4 134478235 134478320 -67850027 - MIR SINE MIR 0 262 170 235 150 25 0 chr4 134478552 134478592 -67849755 - L2 LINE L2 -8 3305 3265 203 215 15 0 chr4 134481221 134481286 -67847061 + (TA)n Simple_repeat Simple_repeat 2 67 0 4020 153 44 3 chr4 134481706 134482440 -67845907 + L1MA4 LINE L1 5531 6294 -6 21 0 0 0 chr4 134482449 134482470 -67845877 + AT_rich Low_complexity Low_complexity 1 21 0 1423 198 49 57 chr4 134482489 134482656 -67845691 + MLT1A1 LTR MaLR 13 180 -185 1864 145 24 0 chr4 134482656 134482952 -67845395 - AluSx SINE Alu -9 303 1 1423 198 49 57 chr4 134482952 134483133 -67845214 + MLT1A1 LTR MaLR 180 358 -7 454 264 90 36 chr4 134485871 134486038 -67842309 + MIR SINE MIR 71 246 -16 255 296 65 139 chr4 134487614 134488074 -67840273 + L2 LINE L2 2847 3272 0 944 271 98 55 chr4 134488101 134488180 -67840167 + L1ME LINE L1 31 105 -5965 192 40 0 0 chr4 134488180 134488205 -67840142 + (CA)n Simple_repeat Simple_repeat 2 26 0 944 271 98 55 chr4 134488205 134488638 -67839709 + L1ME LINE L1 105 565 -5505 599 319 178 42 chr4 134488639 134489569 -67838778 - L2 LINE L2 -208 3064 1981 23 33 0 0 chr4 134489782 134489812 -67838535 + AT_rich Low_complexity Low_complexity 1 30 0 393 271 136 7 chr4 134490154 134490294 -67838053 + MIR SINE MIR 10 167 -95 489 325 80 5 chr4 134490582 134490770 -67837577 + MIR SINE MIR 1 202 -60 341 308 57 19 chr4 134490772 134490931 -67837416 + MLT1J2 LTR MaLR 1 165 -285 293 286 64 6 chr4 134490995 134491152 -67837195 + MLT1J2 LTR MaLR 284 408 -1 23 0 0 0 chr4 134491732 134491755 -67836592 + AT_rich Low_complexity Low_complexity 1 23 0 1840 177 104 35 chr4 134492626 134493079 -67835268 + LTR2B LTR ERV1 7 490 0 212 364 78 13 chr4 134493111 134493265 -67835082 - L2 LINE L2 -23 3290 3127 264 333 92 35 chr4 134494623 134494797 -67833550 - MIR3 SINE MIR -5 203 20 23 0 0 0 chr4 134494838 134494861 -67833486 + AT_rich Low_complexity Low_complexity 1 23 0 291 274 34 51 chr4 134495114 134495231 -67833116 - MIR3 SINE MIR -10 198 84 26 0 0 0 chr4 134495357 134495383 -67832964 + AT_rich Low_complexity Low_complexity 1 26 0 209 119 0 24 chr4 134495686 134495728 -67832619 + (TAA)n Simple_repeat Simple_repeat 1 41 0 308 256 33 11 chr4 134495728 134495818 -67832529 + L2 LINE L2 3222 3313 0 6175 19 4 1 chr4 134496416 134497140 -67831207 + L1PA3 LINE L1 5430 6155 0 1431 222 7 7 chr4 134499828 134500112 -67828235 + MER70B LTR ERVL 1 284 -294 2655 91 11 0 chr4 134500777 134501150 -67827197 - L1PA6 LINE L1 -3126 3020 2644 17491 66 0 1 chr4 134501150 134504269 -67824078 + L1PA6 LINE L1 3020 6154 0 479 95 0 48 chr4 134504469 134504553 -67823794 + MADE1 DNA Mariner 1 80 0 273 119 0 68 chr4 134504868 134504927 -67823420 + L1PA8 LINE L1 6113 6167 -1 1886 213 3 3 chr4 134505053 134505414 -67822933 + MLT1A1 LTR MaLR 1 361 -4 230 231 90 0 chr4 134506858 134506936 -67821411 + L1MC4 LINE L1 6621 6705 -1337 490 321 58 23 chr4 134507277 134507585 -67820762 + L1M4 LINE L1 2561 2879 -3267 237 189 19 0 chr4 134507623 134507676 -67820671 - L1MEc LINE L1 -3161 3054 3001 231 89 54 0 chr4 134507688 134507744 -67820603 + (TA)n Simple_repeat Simple_repeat 1 59 0 1851 240 63 38 chr4 134507744 134508142 -67820205 - L1MEc LINE L1 -3218 2997 2611 2119 99 3 10 chr4 134508142 134508434 -67819913 - AluSx SINE Alu 0 312 23 1851 240 63 38 chr4 134508434 134508628 -67819719 - L1MEc LINE L1 -3604 2611 2423 1262 223 64 37 chr4 134508628 134509004 -67819343 - MLT1B LTR MaLR -4 386 1 1851 240 63 38 chr4 134509004 134509430 -67818917 - L1MEc LINE L1 -3792 2423 1986 887 146 0 0 chr4 134509448 134509578 -67818769 + AluSg/x SINE Alu 171 300 -10 259 250 50 0 chr4 134509773 134509853 -67818494 + L1P LINE L1 4901 4984 -1162 26 0 0 0 chr4 134511223 134511249 -67817098 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 134511493 134511514 -67816833 + AT_rich Low_complexity Low_complexity 1 21 0 359 313 66 43 chr4 134511594 134512251 -67816096 + L1MA7 LINE L1 5175 5884 -294 249 216 20 20 chr4 134512580 134512728 -67815619 + (TAGA)n Simple_repeat Simple_repeat 2 149 0 29 0 0 0 chr4 134512844 134512873 -67815474 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 134513303 134513326 -67815021 + AT_rich Low_complexity Low_complexity 1 23 0 7492 32 0 2 chr4 134513348 134514631 -67813716 - L1PA3 LINE L1 0 6155 4874 22 35 0 0 chr4 134517040 134517069 -67811278 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 134517511 134517539 -67810808 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr4 134517703 134517733 -67810614 + AT_rich Low_complexity Low_complexity 1 30 0 28 99 0 0 chr4 134519388 134519479 -67808868 + AT_rich Low_complexity Low_complexity 1 91 0 1216 177 53 27 chr4 134520059 134520358 -67807989 - L1MC3 LINE L1 -17 7768 7462 1979 201 38 18 chr4 134520358 134520802 -67807545 + L1MC3 LINE L1 7000 7452 -333 240 35 0 0 chr4 134522822 134522851 -67805496 + (CA)n Simple_repeat Simple_repeat 2 30 0 4820 206 36 21 chr4 134523536 134525140 -67803207 - L1MC2 LINE L1 -11 6333 4639 2261 67 0 3 chr4 134526225 134526508 -67801839 - AluY SINE Alu -2 309 28 7141 207 50 26 chr4 134526642 134526757 -67801590 + L1PB4 LINE L1 2221 2332 -3814 279 0 0 0 chr4 134526757 134526788 -67801559 + (TA)n Simple_repeat Simple_repeat 1 31 0 7141 207 50 26 chr4 134526788 134527194 -67801153 + L1PB4 LINE L1 2332 2727 -3419 401 50 17 0 chr4 134527194 134527254 -67801093 + (TA)n Simple_repeat Simple_repeat 2 62 0 7141 207 50 26 chr4 134527254 134528083 -67800264 + L1PB4 LINE L1 2727 3636 -2510 1676 182 3 14 chr4 134528083 134528374 -67799973 + AluJb SINE Alu 1 288 -24 7141 207 50 26 chr4 134528374 134528955 -67799392 + L1PB4 LINE L1 3636 4201 -1945 482 50 0 0 chr4 134528944 134529004 -67799343 - L1P3 LINE L1 -480 5674 5615 * 3792 80 25 6 chr4 134528975 134529518 -67798829 + L1PA7 LINE L1 5621 6154 0 * 3975 195 2 7 chr4 134529513 134530337 -67798010 + L1PB4 LINE L1 4180 4999 -1147 1593 152 19 19 chr4 134530365 134530685 -67797662 + L1PB4 LINE L1 5785 6143 -13 2273 87 0 13 chr4 134531135 134531434 -67796913 - AluSq SINE Alu -16 297 3 2350 245 47 68 chr4 134531544 134532288 -67796059 - MER21B LTR ERV1 -124 739 12 2847 196 60 3 chr4 134532955 134533521 -67794826 + L1MC1 LINE L1 132 729 -5811 1092 207 34 37 chr4 134533556 134533925 -67794422 + L1MC1 LINE L1 2554 2922 -3618 401 181 56 0 chr4 134533960 134534032 -67794315 - Tigger3(Golem) DNA MER2_type -2950 79 4 5092 186 18 12 chr4 134534039 134535382 -67792965 + L1MC1 LINE L1 5241 6727 0 1551 199 29 11 chr4 134537224 134537501 -67790846 + AluJb SINE Alu 1 282 -30 228 67 0 0 chr4 134537501 134537531 -67790816 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 24 32 0 0 chr4 134537899 134537930 -67790417 + AT_rich Low_complexity Low_complexity 1 31 0 186 133 0 0 chr4 134538293 134538323 -67790024 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 312 103 29 15 chr4 134538501 134538569 -67789778 + (TA)n Simple_repeat Simple_repeat 1 69 0 426 275 33 8 chr4 134538698 134538818 -67789529 - MLT1I LTR MaLR -214 195 73 195 69 0 0 chr4 134539424 134539453 -67788894 + (A)n Simple_repeat Simple_repeat 1 29 0 519 275 190 15 chr4 134540474 134540674 -67787673 - MIR SINE MIR 0 262 28 4398 128 3 41 chr4 134541640 134542400 -67785947 - Tigger4(Zombi) DNA MER2_type -3 2728 1998 640 257 21 12 chr4 134542416 134542657 -67785690 + L1MEc LINE L1 1837 2079 -4317 227 186 0 0 chr4 134542663 134542706 -67785641 + (AAATG)n Simple_repeat Simple_repeat 1 43 0 245 319 251 0 chr4 134542706 134542869 -67785478 - L2 LINE L2 -1079 2235 2032 2195 99 0 29 chr4 134543214 134543526 -67784821 - AluSx SINE Alu -9 303 1 269 203 63 25 chr4 134543608 134543687 -67784660 + L1M4 LINE L1 5031 5112 -1034 22 0 0 0 chr4 134544089 134544111 -67784236 + AT_rich Low_complexity Low_complexity 1 22 0 499 231 104 131 chr4 134544125 134544385 -67783962 + MLT1F1 LTR MaLR 10 274 -280 834 175 45 23 chr4 134544409 134544586 -67783761 + MLT1F1 LTR MaLR 387 567 0 273 241 0 17 chr4 134545577 134545635 -67782712 - L2 LINE L2 -13 3300 3244 2319 101 0 3 chr4 134545979 134546286 -67782061 + AluSg SINE Alu 1 306 -4 202 62 47 62 chr4 134547472 134547536 -67780811 + T-rich Low_complexity Low_complexity 2 64 0 233 308 22 33 chr4 134547796 134547887 -67780460 + MIR SINE MIR 63 152 -110 351 0 0 0 chr4 134548036 134548075 -67780272 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr4 134550447 134550475 -67777872 + AT_rich Low_complexity Low_complexity 1 28 0 2323 113 0 0 chr4 134550882 134551191 -67777156 - AluSc SINE Alu 0 309 1 465 179 0 0 chr4 134551721 134551799 -67776548 + AluJ/FLAM SINE Alu 2 79 -233 860 319 50 26 chr4 134551869 134552248 -67776099 + LTR16C LTR ERVL 104 491 0 850 161 42 0 chr4 134552414 134552582 -67775765 + L1MA3 LINE L1 6127 6301 -4 1030 293 81 16 chr4 134553152 134553225 -67775122 - MLT1I LTR MaLR 0 409 342 1600 168 3 44 chr4 134553225 134553540 -67774807 - AluJb SINE Alu -10 302 1 1030 293 81 16 chr4 134553540 134553848 -67774499 - MLT1I LTR MaLR -67 342 3 185 33 82 33 chr4 134554015 134554076 -67774271 + (TA)n Simple_repeat Simple_repeat 1 64 0 204 182 52 13 chr4 134554089 134554166 -67774181 + (TTATA)n Simple_repeat Simple_repeat 2 81 0 2151 114 0 19 chr4 134555772 134556111 -67772236 + AluSq SINE Alu 1 313 0 24 67 0 0 chr4 134556575 134556620 -67771727 + AT_rich Low_complexity Low_complexity 1 45 0 1881 152 23 143 chr4 134556897 134557109 -67771238 + L1MA6 LINE L1 5571 5682 -618 183 42 0 0 chr4 134557109 134557133 -67771214 + (CA)n Simple_repeat Simple_repeat 1 24 0 1881 152 23 143 chr4 134557133 134557452 -67770895 + L1MA6 LINE L1 5682 6038 -262 540 291 71 64 chr4 134557480 134557954 -67770393 + L1M2 LINE L1 4 489 -6349 7617 219 33 70 chr4 134559078 134560020 -67768327 + L1PA16 LINE L1 866 1841 -4382 2386 93 3 0 chr4 134560020 134560330 -67768017 - AluSx SINE Alu -1 311 1 7617 219 33 70 chr4 134560330 134560537 -67767810 + L1PA16 LINE L1 1841 2054 -4169 1930 105 4 4 chr4 134560537 134560803 -67767544 + AluSc SINE Alu 31 296 -13 7617 219 33 70 chr4 134560803 134564346 -67764001 + L1PA16 LINE L1 2054 5389 -834 2109 125 10 7 chr4 134564346 134564649 -67763698 + AluSx SINE Alu 1 304 -8 7617 219 33 70 chr4 134564649 134565363 -67762984 + L1PA16 LINE L1 5389 6128 -95 364 210 0 3 chr4 134565366 134565492 -67762855 + AluS SINE Alu 228 333 0 901 174 87 93 chr4 134565495 134565826 -67762521 - MLT1A1 LTR MaLR -60 305 1 1845 147 19 25 chr4 134567075 134567389 -67760958 + THE1C LTR MaLR 1 312 -63 22 0 0 0 chr4 134568122 134568144 -67760203 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr4 134569647 134569682 -67758665 + AT_rich Low_complexity Low_complexity 1 35 0 932 290 75 39 chr4 134569932 134570048 -67758299 - L2 LINE L2 -715 2599 2489 209 0 0 88 chr4 134570048 134570082 -67758265 + (TTATA)n Simple_repeat Simple_repeat 5 35 0 932 290 75 39 chr4 134570082 134570406 -67757941 - L2 LINE L2 -825 2489 2143 387 325 71 100 chr4 134570424 134571234 -67757113 + L1PBb LINE L1 1 806 -6403 * 437 361 41 8 chr4 134571223 134571467 -67756880 + L1PBb LINE L1 1057 1308 -5901 4085 232 42 91 chr4 134571617 134572576 -67755771 + L1PBb LINE L1 1376 2381 -4827 444 19 0 0 chr4 134572576 134572629 -67755718 + (CA)n Simple_repeat Simple_repeat 2 54 0 414 0 0 0 chr4 134572628 134572674 -67755673 + (TA)n Simple_repeat Simple_repeat 2 47 0 * 4085 232 42 91 chr4 134572629 134572674 -67755673 + L1PBb LINE L1 2381 2427 -4781 2061 85 3 69 chr4 134572674 134572979 -67755368 - AluSq SINE Alu -28 285 1 4085 232 42 91 chr4 134572979 134573550 -67754797 + L1PBb LINE L1 2427 2902 -4306 189 0 0 0 chr4 134573550 134573571 -67754776 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 4085 232 42 91 chr4 134573571 134573806 -67754541 + L1PBb LINE L1 2902 3147 -4061 2216 123 0 0 chr4 134574109 134574409 -67753938 - AluSx SINE Alu -11 301 2 1632 209 0 6 chr4 134574574 134574885 -67753462 - AluJb SINE Alu -3 309 1 810 128 88 20 chr4 134574972 134575120 -67753227 - MER6B DNA MER2_type -50 160 3 451 254 58 0 chr4 134575255 134575393 -67752954 - L1MEc LINE L1 -3704 2511 2366 1146 241 62 41 chr4 134575396 134575765 -67752582 - MLT1B LTR MaLR -4 386 10 667 297 41 41 chr4 134575780 134576194 -67752153 - L1MEc LINE L1 -3992 2404 1991 593 200 8 15 chr4 134576217 134576347 -67752000 + AluSg/x SINE Alu 171 299 -10 3448 159 19 2 chr4 134576666 134577282 -67751065 - L1MA4 LINE L1 -210 6090 5464 672 183 0 0 chr4 134577284 134577404 -67750943 + L1MA4 LINE L1 5356 5475 -825 23 33 0 0 chr4 134577520 134577550 -67750797 + AT_rich Low_complexity Low_complexity 1 30 0 327 182 0 0 chr4 134577601 134577678 -67750669 + (TGGA)n Simple_repeat Simple_repeat 4 80 0 185 330 99 0 chr4 134579020 134579111 -67749236 - MIR SINE MIR -156 106 7 189 295 33 0 chr4 134579267 134579328 -67749019 + MIR SINE MIR 195 257 -5 1567 169 0 86 chr4 134579447 134579772 -67748575 - AluJb SINE Alu -15 297 1 212 299 11 35 chr4 134580137 134580224 -67748123 + MIR SINE MIR 178 262 0 31 0 0 0 chr4 134580248 134580279 -67748068 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr4 134580396 134580426 -67747921 + AT_rich Low_complexity Low_complexity 1 30 0 254 164 18 0 chr4 134580608 134580663 -67747684 + GA-rich Low_complexity Low_complexity 2 57 0 190 361 9 28 chr4 134580754 134580862 -67747485 - MIR3 SINE MIR -14 194 89 2280 98 3 0 chr4 134582216 134582522 -67745825 - AluSx SINE Alu -3 309 3 216 149 0 0 chr4 134582598 134582645 -67745702 + (TG)n Simple_repeat Simple_repeat 2 48 0 340 305 11 0 chr4 134582858 134582953 -67745394 + MIR SINE MIR 52 147 -115 788 263 112 52 chr4 134583529 134583967 -67744380 - MLT1C LTR MaLR -3 464 1 250 377 34 0 chr4 134584238 134584384 -67743963 + MER103 DNA DNA 14 164 -2 185 152 0 0 chr4 134584568 134584601 -67743746 - L2 LINE L2 -8 3305 3273 26 0 0 0 chr4 134585313 134585339 -67743008 + AT_rich Low_complexity Low_complexity 1 26 0 377 318 6 53 chr4 134586415 134586585 -67741762 + MER5A DNA MER1_type 27 188 -1 23 33 0 0 chr4 134586893 134586923 -67741424 + AT_rich Low_complexity Low_complexity 1 30 0 2045 118 0 46 chr4 134587741 134588064 -67740283 - AluSx SINE Alu 0 312 5 915 294 83 18 chr4 134588295 134588731 -67739616 + LTR16B LTR ERVL 1 464 0 955 347 51 34 chr4 134588732 134589383 -67738964 + HERV16 LTR ERVL 3 664 -4332 1789 172 27 27 chr4 134589506 134589844 -67738503 + LTR32 LTR ERVL 15 352 -119 850 161 7 7 chr4 134589896 134590051 -67738296 + LTR32 LTR ERVL 317 471 0 1978 348 41 18 chr4 134590061 134592443 -67735904 + HERV16 LTR ERVL 798 3392 -1905 45 87 0 0 chr4 134592852 134592967 -67735380 + AT_rich Low_complexity Low_complexity 1 115 0 2377 166 52 2 chr4 134593022 134593467 -67734880 + L1PB4 LINE L1 5689 6155 -1 306 265 86 43 chr4 134593615 134593777 -67734570 + L1ME4a LINE L1 5742 5910 -211 23 68 0 0 chr4 134593873 134593917 -67734430 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr4 134594046 134594068 -67734279 + AT_rich Low_complexity Low_complexity 1 22 0 2549 52 0 0 chr4 134594196 134594503 -67733844 - AluY SINE Alu -4 307 1 220 70 47 0 chr4 134594615 134594658 -67733689 + (TA)n Simple_repeat Simple_repeat 1 45 0 1347 234 17 6 chr4 134594690 134595049 -67733298 - L1MEc LINE L1 -5425 971 609 2178 161 83 18 chr4 134595049 134595483 -67732864 + MLT1C LTR MaLR 1 462 -5 1479 255 32 70 chr4 134595487 134596048 -67732299 - L1MEc LINE L1 -5783 613 74 624 319 157 20 chr4 134596097 134596511 -67731836 + L2 LINE L2 2661 3178 -135 1111 174 67 18 chr4 134596511 134596735 -67731612 + MER46A DNA MER2_type 2 236 0 624 319 157 20 chr4 134596735 134596871 -67731476 + L2 LINE L2 3178 3294 -19 23 0 0 0 chr4 134596887 134596910 -67731437 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr4 134597473 134597501 -67730846 + AT_rich Low_complexity Low_complexity 1 28 0 472 286 97 25 chr4 134598771 134599009 -67729338 - MLT1J LTR MaLR -144 367 113 244 183 28 14 chr4 134599118 134599189 -67729158 + L1MCa LINE L1 1996 2067 -4359 313 247 26 0 chr4 134599190 134599267 -67729080 - L1MC4 LINE L1 -1350 6692 6614 476 122 40 0 chr4 134599744 134599818 -67728529 + Tigger3(Golem) DNA MER2_type 2 78 -2951 811 174 14 0 chr4 134599818 134599956 -67728391 + BC200 scRNA scRNA 1 140 -60 287 51 26 0 chr4 134599956 134599995 -67728352 + Tigger3(Golem) DNA MER2_type 65 104 -2925 * 4064 129 59 7 chr4 134599990 134600702 -67727645 + Tigger3(Golem) DNA MER2_type 2277 3025 -4 259 349 60 36 chr4 134600947 134601113 -67727234 - MIR SINE MIR -87 175 6 490 272 114 61 chr4 134601816 134602209 -67726138 - MLT1J2 LTR MaLR 0 450 37 21 0 0 0 chr4 134602396 134602417 -67725930 + AT_rich Low_complexity Low_complexity 1 21 0 1557 235 12 6 chr4 134602945 134603281 -67725066 + MSTD LTR MaLR 1 338 -58 1947 149 0 16 chr4 134603281 134603597 -67724750 - AluSx SINE Alu -1 311 1 4247 137 29 33 chr4 134603602 134603973 -67724374 - L1PB4 LINE L1 0 6156 5785 198 0 0 0 chr4 134603973 134603995 -67724352 + (TG)n Simple_repeat Simple_repeat 2 23 0 4247 137 29 33 chr4 134603995 134604410 -67723937 - L1PB4 LINE L1 -371 5785 5373 393 143 0 0 chr4 134604412 134604475 -67723872 + MSTD LTR MaLR 334 396 0 2137 112 7 10 chr4 134604514 134604810 -67723537 - AluSx SINE Alu -17 295 1 24 67 0 0 chr4 134604835 134604880 -67723467 + AT_rich Low_complexity Low_complexity 1 45 0 364 330 44 16 chr4 134606829 134607011 -67721336 + MIR SINE MIR 32 218 -44 251 326 11 0 chr4 134607501 134607593 -67720754 - MER94 DNA DNA -3 131 39 376 266 62 0 chr4 134607713 134607841 -67720506 + L1MC4a LINE L1 5118 5253 -893 1113 267 200 16 chr4 134607854 134608539 -67719808 + L1MC4a LINE L1 5272 6082 -1726 1648 221 15 0 chr4 134608556 134608958 -67719389 - L1 LINE L1 -1647 4499 4092 3652 185 56 4 chr4 134608958 134609655 -67718692 + MER44D DNA MER2_type 1 605 0 481 261 105 45 chr4 134609660 134609993 -67718354 + L1MC4a LINE L1 6112 6464 -1344 341 186 0 57 chr4 134609993 134610063 -67718284 - MER2 DNA MER2_type -1 344 279 37 62 0 0 chr4 134610135 134610200 -67718147 + AT_rich Low_complexity Low_complexity 1 65 0 573 305 74 44 chr4 134610277 134610627 -67717720 + L1ME3A LINE L1 5302 5673 -448 2335 144 66 7 chr4 134610627 134611037 -67717310 + MER61C LTR ERV1 1 434 0 573 305 74 44 chr4 134611037 134611185 -67717162 + L1ME3A LINE L1 5673 5815 -306 27 49 0 0 chr4 134611219 134611260 -67717087 + AT_rich Low_complexity Low_complexity 1 41 0 2094 121 7 3 chr4 134611263 134611560 -67716787 + AluSq SINE Alu 1 298 -15 180 0 0 0 chr4 134611561 134611581 -67716766 + (TA)n Simple_repeat Simple_repeat 2 21 0 11949 137 50 91 chr4 134612073 134613515 -67714832 + Tigger1 DNA MER2_type 1 1500 -918 2410 88 0 0 chr4 134613515 134613812 -67714535 - AluY SINE Alu -14 297 1 11949 137 50 91 chr4 134613812 134613850 -67714497 + Tigger1 DNA MER2_type 1500 1538 -880 794 222 12 12 chr4 134613850 134614021 -67714326 + FRAM SINE Alu 1 171 -5 11949 137 50 91 chr4 134614021 134614889 -67713458 + Tigger1 DNA MER2_type 1538 2418 0 313 197 33 0 chr4 134615302 134615363 -67712984 + L2 LINE L2 3191 3253 -60 276 312 145 47 chr4 134615887 134616121 -67712226 - MIR SINE MIR 0 262 6 21 0 0 0 chr4 134616615 134616636 -67711711 + AT_rich Low_complexity Low_complexity 1 21 0 20163 103 16 12 chr4 134617412 134620395 -67707952 + L1PA6 LINE L1 11 3004 -3142 17086 58 9 5 chr4 134620397 134623386 -67704961 + L1PA6 LINE L1 3139 6150 -4 184 149 64 43 chr4 134624185 134624232 -67704115 + MIR SINE MIR 67 114 -148 333 195 3 2 chr4 134624255 134624330 -67704017 - MLT1E3 LTR MaLR 0 624 480 23 0 0 0 chr4 134624368 134624391 -67703956 + AT_rich Low_complexity Low_complexity 1 23 0 1021 219 18 35 chr4 134624515 134624743 -67703604 - MER58A DNA MER1_type 0 224 1 270 0 0 0 chr4 134624762 134624792 -67703555 + (CA)n Simple_repeat Simple_repeat 2 31 0 530 316 42 0 chr4 134627056 134627271 -67701076 + L1ME3A LINE L1 5942 6165 -5 29 60 0 0 chr4 134627533 134627583 -67700764 + AT_rich Low_complexity Low_complexity 1 50 0 324 0 0 0 chr4 134627601 134627637 -67700710 + (CA)n Simple_repeat Simple_repeat 2 37 0 579 338 72 0 chr4 134629223 134629460 -67698887 - MIR SINE MIR -3 259 6 48 32 0 0 chr4 134629641 134629703 -67698644 + AT_rich Low_complexity Low_complexity 1 62 0 306 207 17 0 chr4 134631231 134631289 -67697058 - MLT1C LTR MaLR -405 62 4 1538 160 11 133 chr4 134632076 134632341 -67696006 - MLT1B LTR MaLR 0 390 94 213 39 0 0 chr4 134632341 134632367 -67695980 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1366 192 44 0 chr4 134632367 134632638 -67695709 - AluJb SINE Alu -29 283 1 1538 160 11 133 chr4 134632638 134632815 -67695532 - MLT1B LTR MaLR -294 96 1 206 103 0 26 chr4 134633006 134633045 -67695302 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 201 155 86 0 chr4 134633065 134633123 -67695224 + A-rich Low_complexity Low_complexity 1 63 0 257 305 105 9 chr4 134633128 134633233 -67695114 + L2 LINE L2 3199 3313 0 26 50 0 0 chr4 134633316 134633356 -67694991 + AT_rich Low_complexity Low_complexity 1 40 0 421 325 108 5 chr4 134636996 134637208 -67691139 - MIR SINE MIR 0 262 29 1154 328 80 20 chr4 134637443 134637983 -67690364 + L1MCb LINE L1 5 576 -5469 989 229 45 112 chr4 134638053 134638371 -67689976 - MSTB2 LTR MaLR 0 457 182 2070 118 3 25 chr4 134638371 134638686 -67689661 + AluSx SINE Alu 1 308 -4 989 229 45 112 chr4 134638686 134638857 -67689490 - MSTB2 LTR MaLR -275 182 1 1738 253 61 12 chr4 134638880 134639453 -67688894 + L1MCb LINE L1 569 1169 -4876 * 1965 276 47 45 chr4 134639423 134641078 -67687269 + L1MCb LINE L1 1631 3235 -3329 424 343 96 30 chr4 134641079 134641411 -67686936 - L3 LINE CR1 -150 1427 1074 306 0 0 0 chr4 134642639 134642673 -67685674 + (CA)n Simple_repeat Simple_repeat 1 34 0 25 0 0 0 chr4 134644148 134644173 -67684174 + AT_rich Low_complexity Low_complexity 1 25 0 191 356 97 31 chr4 134645885 134646094 -67682253 - L2 LINE L2 -162 3110 2916 1963 140 6 43 chr4 134646094 134646257 -67682090 + MER44D DNA MER2_type 1 169 -2322 2239 109 0 3 chr4 134646257 134646568 -67681779 - AluSq SINE Alu -3 310 1 1963 140 6 43 chr4 134646568 134646754 -67681593 + MER44D DNA MER2_type 169 607 -2 191 356 97 31 chr4 134646754 134646982 -67681365 - L2 LINE L2 -356 2916 2656 314 242 8 89 chr4 134647237 134647361 -67680986 - MLT1H LTR MaLR 0 549 436 306 261 34 34 chr4 134647512 134647631 -67680716 - MLT1H LTR MaLR -388 161 43 23 0 0 0 chr4 134647985 134648008 -67680339 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 134648165 134648193 -67680154 + AT_rich Low_complexity Low_complexity 1 28 0 297 51 0 0 chr4 134648663 134648702 -67679645 + (CA)n Simple_repeat Simple_repeat 1 39 0 362 300 47 12 chr4 134649723 134649893 -67678454 + L1ME LINE L1 5516 5691 -430 231 222 0 0 chr4 134649863 134649917 -67678430 - L1MC4 LINE L1 -1336 6706 6653 * 209 137 26 43 chr4 134651092 134651209 -67677138 + (TATAA)n Simple_repeat Simple_repeat 3 117 0 5242 138 34 57 chr4 134651684 134652762 -67675585 - L1MA9 LINE L1 0 6312 5259 1773 213 37 3 chr4 134652762 134653115 -67675232 - MLT1A1 LTR MaLR 0 365 1 5242 138 34 57 chr4 134653115 134653313 -67675034 - L1MA9 LINE L1 -1053 5259 5058 1552 213 6 28 chr4 134654114 134654433 -67673914 + AluJo SINE Alu 1 312 0 380 200 11 0 chr4 134654438 134654533 -67673814 + GA-rich Low_complexity Low_complexity 4 99 0 28 0 0 0 chr4 134654759 134654787 -67673560 + AT_rich Low_complexity Low_complexity 1 28 0 693 333 75 25 chr4 134655314 134655747 -67672600 - MLT1H1 LTR MaLR -77 518 1 2545 40 0 0 chr4 134657078 134657377 -67670970 + AluY SINE Alu 1 299 -12 492 325 167 13 chr4 134657436 134657804 -67670543 - L2 LINE L2 -257 3056 2620 353 309 68 55 chr4 134659006 134659242 -67669105 - L2 LINE L2 -454 2860 2622 561 325 45 16 chr4 134659831 134660074 -67668273 + MIR SINE MIR 13 262 0 488 153 0 59 chr4 134660631 134660716 -67667631 - MLT1E2 LTR MaLR -544 82 3 2073 130 0 3 chr4 134660845 134661152 -67667195 - AluSg SINE Alu -4 306 1 213 108 0 0 chr4 134661157 134661194 -67667153 + (T)n Simple_repeat Simple_repeat 1 37 0 27 49 0 0 chr4 134661449 134661490 -67666857 + AT_rich Low_complexity Low_complexity 1 41 0 1506 225 42 92 chr4 134662571 134663215 -67665132 - LTR9 LTR ERV1 0 612 1 511 246 131 46 chr4 134663265 134663662 -67664685 - LTR33 LTR ERVL -3 518 1 1225 214 57 64 chr4 134664528 134664949 -67663398 + LTR52 LTR ERVL 1 418 -3 29 70 0 0 chr4 134666642 134666699 -67661648 + AT_rich Low_complexity Low_complexity 1 57 0 467 211 41 61 chr4 134666775 134666895 -67661452 - L1ME1 LINE L1 -2 6164 6046 2743 19 0 0 chr4 134666895 134667206 -67661141 + AluY SINE Alu 1 311 0 467 211 41 61 chr4 134667206 134667232 -67661115 - L1ME1 LINE L1 -120 6046 6021 837 223 10 31 chr4 134668677 134668870 -67659477 - MER5A DNA MER1_type 0 189 1 230 272 141 11 chr4 134669886 134669978 -67658369 - MER103 DNA DNA -2 164 61 294 146 11 0 chr4 134669979 134670041 -67658306 - MLT2B1 LTR ERVL 0 520 390 222 128 0 0 chr4 134670061 134670100 -67658247 + (GA)n Simple_repeat Simple_repeat 1 39 0 1974 215 10 46 chr4 134670105 134670584 -67657763 - MLT2B1 LTR ERVL -56 464 3 1517 166 38 6 chr4 134672877 134673191 -67655156 + MER33 DNA MER1_type 1 324 0 582 173 102 0 chr4 134674078 134674205 -67654142 + FLAM_C SINE Alu 1 140 -3 852 194 47 52 chr4 134674218 134674429 -67653918 + AluJo SINE Alu 99 308 -4 425 309 103 57 chr4 134675408 134675758 -67652589 + LTR16C LTR ERVL 79 444 -47 22 70 0 0 chr4 134676135 134676178 -67652169 + AT_rich Low_complexity Low_complexity 1 43 0 26 0 0 0 chr4 134676238 134676264 -67652083 + AT_rich Low_complexity Low_complexity 1 26 0 27 29 0 0 chr4 134676449 134676483 -67651864 + AT_rich Low_complexity Low_complexity 1 34 0 33 56 0 0 chr4 134677199 134677253 -67651094 + AT_rich Low_complexity Low_complexity 1 54 0 24 32 0 0 chr4 134677346 134677377 -67650970 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 134677710 134677738 -67650609 + AT_rich Low_complexity Low_complexity 1 28 0 191 59 0 29 chr4 134678009 134678043 -67650304 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2401 78 0 3 chr4 134678321 134678630 -67649717 - AluSq SINE Alu -5 308 1 2457 58 0 13 chr4 134679517 134679826 -67648521 + AluY SINE Alu 1 305 -6 33 29 0 0 chr4 134679852 134679887 -67648460 + AT_rich Low_complexity Low_complexity 1 35 0 228 111 0 0 chr4 134681329 134681365 -67646982 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 309 297 44 0 chr4 134682386 134682477 -67645870 + MIR3 SINE MIR 87 181 -27 229 183 14 14 chr4 134682661 134682732 -67645615 + (TA)n Simple_repeat Simple_repeat 1 71 0 191 176 0 0 chr4 134682856 134682890 -67645457 + MIR SINE MIR 107 140 -122 245 258 40 73 chr4 134683825 134683949 -67644398 - L1MC4 LINE L1 -1 8041 7922 344 288 0 9 chr4 134684020 134684131 -67644216 - L1MC4 LINE L1 -144 7898 7789 446 274 9 0 chr4 134684213 134684319 -67644028 + MIR SINE MIR 60 166 -96 274 54 0 0 chr4 134684436 134684473 -67643874 - L1PA6 LINE L1 -9 6145 6109 197 250 54 87 chr4 134684515 134684607 -67643740 + L2 LINE L2 1130 1218 -2096 201 304 25 13 chr4 134685254 134685333 -67643014 - L2 LINE L2 -1034 2280 2201 180 250 250 0 chr4 134686686 134686746 -67641601 - L2 LINE L2 -2 3270 3196 2142 120 0 0 chr4 134687704 134688005 -67640342 - AluSx SINE Alu -11 301 1 25 51 0 0 chr4 134688226 134688265 -67640082 + AT_rich Low_complexity Low_complexity 1 39 0 394 319 64 82 chr4 134688384 134688836 -67639511 + L2 LINE L2 2828 3271 -1 448 197 0 23 chr4 134688894 134689026 -67639321 + (CATA)n Simple_repeat Simple_repeat 4 132 0 208 322 0 0 chr4 134689064 134689123 -67639224 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 204 267 0 0 chr4 134690652 134690697 -67637650 + L2 LINE L2 3265 3309 -4 618 217 19 19 chr4 134690873 134691030 -67637317 + L1M4 LINE L1 8 164 -6378 4025 246 59 40 chr4 134691071 134691835 -67636512 + L1M4 LINE L1 510 1258 -5386 2091 138 3 3 chr4 134691835 134692146 -67636201 + AluSx SINE Alu 1 311 -1 4025 246 59 40 chr4 134692146 134693439 -67634908 + L1M4 LINE L1 1258 2524 -4120 1796 122 84 0 chr4 134693439 134693725 -67634622 + L1PA16 LINE L1 5848 6157 -9 4025 246 59 40 chr4 134693725 134694969 -67633378 + L1M4 LINE L1 2524 3997 -2647 2390 217 92 86 chr4 134694981 134696118 -67632229 + L1M4 LINE L1 4274 5416 -1228 3980 138 71 6 chr4 134696276 134696980 -67631367 - L1MC1 LINE L1 0 6333 5584 1502 185 6 64 chr4 134697327 134697656 -67630691 + AluJb SINE Alu 3 312 0 342 226 43 21 chr4 134697657 134697750 -67630597 + L1MC4 LINE L1 6609 6703 -1339 314 256 93 0 chr4 134697698 134697784 -67630563 - L1MC4 LINE L1 -1339 6703 6610 * 6490 201 89 16 chr4 134699720 134701277 -67627070 + L1MC3 LINE L1 6116 7785 0 304 283 88 56 chr4 134701271 134701522 -67626825 + L1MB8 LINE L1 4448 4706 -1938 * 231 167 42 0 chr4 134701710 134701758 -67626589 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 561 207 18 0 chr4 134702477 134702588 -67625759 - L2 LINE L2 -7 3306 3194 227 380 18 18 chr4 134702968 134703139 -67625208 + L2 LINE L2 2925 3095 -177 233 294 103 44 chr4 134703323 134703459 -67624888 + MIR SINE MIR 73 216 -46 3241 187 47 12 chr4 134705573 134706597 -67621750 + L1MB8 LINE L1 5386 6448 -228 670 175 25 0 chr4 134706608 134706728 -67621619 - L1MC1 LINE L1 -11 6322 6200 442 126 0 116 chr4 134706728 134706763 -67621584 - MSTB2 LTR MaLR -371 86 49 2197 107 23 0 chr4 134706763 134707062 -67621285 - AluSx SINE Alu -6 306 1 442 126 0 116 chr4 134707062 134707121 -67621226 - MSTB2 LTR MaLR -408 49 3 1933 114 35 3 chr4 134708527 134708816 -67619531 - AluSq SINE Alu -15 298 1 4667 133 10 4 chr4 134709290 134709997 -67618350 - MER50 LTR ERV1 -23 711 1 200 35 35 0 chr4 134710191 134710220 -67618127 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 803 61 0 0 chr4 134710220 134710319 -67618028 - L1PA7 LINE L1 -16 6138 6040 351 56 0 19 chr4 134710319 134710373 -67617974 + L1P LINE L1 5370 5422 -732 23 0 0 0 chr4 134710619 134710642 -67617705 + AT_rich Low_complexity Low_complexity 1 23 0 1035 149 35 35 chr4 134710769 134710970 -67617377 + MLT1B LTR MaLR 1 201 -189 8113 108 15 5 chr4 134711092 134712371 -67615976 - L1P LINE L1 -2464 3682 2391 1401 227 11 83 chr4 134712374 134712832 -67615515 - MLT1D LTR MaLR -80 425 1 31 0 0 0 chr4 134712919 134712950 -67615397 + AT_rich Low_complexity Low_complexity 1 31 0 334 290 63 81 chr4 134713058 134713641 -67614706 - L1M4 LINE L1 -1909 4237 3665 299 336 85 13 chr4 134713625 134713860 -67614487 - HAL1 LINE L1 -762 1745 1494 * 363 285 13 33 chr4 134714048 134714199 -67614148 - L1MEd LINE L1 -4922 1197 1050 345 213 155 35 chr4 134714286 134714460 -67613887 - L1MEd LINE L1 -5282 837 643 244 316 82 41 chr4 134715044 134715240 -67613107 - MIR SINE MIR -51 211 8 21 0 0 0 chr4 134715739 134715760 -67612587 + AT_rich Low_complexity Low_complexity 1 21 0 884 159 33 0 chr4 134716496 134716647 -67611700 + LTR24 LTR ERV1 282 437 -30 1145 113 23 155 chr4 134718627 134718892 -67609455 - MER30 DNA MER1_type 0 230 1 409 279 48 27 chr4 134718894 134719041 -67609306 - MIR SINE MIR -80 182 33 189 0 0 0 chr4 134719127 134719148 -67609199 + (A)n Simple_repeat Simple_repeat 1 21 0 2080 140 0 0 chr4 134721364 134721664 -67606683 - AluSx SINE Alu -12 300 1 630 302 135 19 chr4 134722264 134722850 -67605497 + L1ME LINE L1 4410 5063 -1083 355 297 61 12 chr4 134723222 134723387 -67604960 + L1ME LINE L1 5512 5684 -437 30 59 0 0 chr4 134723453 134723504 -67604843 + AT_rich Low_complexity Low_complexity 1 51 0 1296 26 0 0 chr4 134724694 134724847 -67603500 + L1PA5 LINE L1 6000 6152 -2 207 0 0 0 chr4 134724868 134724891 -67603456 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 636 269 167 26 chr4 134724909 134725477 -67602870 - L1ME LINE L1 -4069 2192 1545 2672 172 14 8 chr4 134725500 134726001 -67602346 - L1MA6 LINE L1 -4 6296 5793 279 0 0 0 chr4 134726001 134726032 -67602315 + (TG)n Simple_repeat Simple_repeat 2 32 0 5232 159 38 65 chr4 134726050 134727305 -67601042 - L1MA6 LINE L1 -1255 4891 3671 538 259 109 67 chr4 134727372 134728109 -67600238 - L1ME LINE L1 -4895 1366 556 312 27 0 0 chr4 134728379 134728416 -67599931 + (TA)n Simple_repeat Simple_repeat 1 37 0 713 320 25 37 chr4 134729231 134729553 -67598794 + LTR16C LTR ERVL 1 318 -173 1693 124 23 8 chr4 134729580 134729839 -67598508 - AluSq SINE Alu -50 263 1 526 153 10 0 chr4 134729841 134729939 -67598408 - MLT1D LTR MaLR 0 505 407 7409 88 14 9 chr4 134729942 134732187 -67596160 - L1PA7 LINE L1 -1 6153 3732 12207 64 1 5 chr4 134732287 134733856 -67594491 - L1PA7 LINE L1 -4573 1573 10 3382 158 2 10 chr4 134733929 134734505 -67593842 - MSTA-int LTR MaLR -1080 571 1 1616 150 232 20 chr4 134734505 134734557 -67593790 - MSTA LTR MaLR 0 428 388 2579 116 3 0 chr4 134734557 134734920 -67593427 + THE1B LTR MaLR 1 364 0 1616 150 232 20 chr4 134734920 134735220 -67593127 - MSTA LTR MaLR -40 388 1 372 125 28 0 chr4 134735220 134735292 -67593055 + L1MB2 LINE L1 6087 6160 -11 4645 255 58 9 chr4 134735295 134736662 -67591685 - Charlie1 DNA MER1_type -469 2292 858 248 242 16 0 chr4 134736689 134736751 -67591596 - Charlie1 DNA MER1_type -2585 176 114 294 339 8 8 chr4 134736753 134736874 -67591473 + L1MB2 LINE L1 1 121 -6421 1689 206 100 23 chr4 134736926 134737367 -67590980 + L1MB2 LINE L1 5695 6169 -2 21 0 0 0 chr4 134737565 134737586 -67590761 + AT_rich Low_complexity Low_complexity 1 21 0 1894 284 70 64 chr4 134737690 134738961 -67589386 + L1MB2 LINE L1 188 1466 -5076 739 235 20 5 chr4 134738957 134739161 -67589186 + L1M4 LINE L1 3716 3922 -2224 * 2432 221 49 22 chr4 134739164 134739855 -67588492 + L1MB2 LINE L1 1457 2166 -4480 1091 152 0 0 chr4 134739871 134740029 -67588318 - AluSg/x SINE Alu -8 304 147 1227 131 42 9 chr4 134740283 134740497 -67587850 - pTR5 LTR ERV1 -2046 392 172 363 257 10 0 chr4 134740500 134740601 -67587746 - LTR30 LTR ERV1 -80 642 541 6577 132 76 30 chr4 134740601 134741825 -67586522 - pTR5 LTR ERV1 -416 2022 743 1357 236 80 13 chr4 134741825 134742376 -67585971 + L1MB2 LINE L1 3224 3811 -2833 3168 229 104 33 chr4 134742378 134742625 -67585722 + L1MB2 LINE L1 3949 4177 -2467 1524 207 16 10 chr4 134742625 134742929 -67585418 + AluJo SINE Alu 1 306 -6 3168 229 104 33 chr4 134742929 134743906 -67584441 + L1MB2 LINE L1 4177 5261 -1383 561 170 0 0 chr4 134743925 134744025 -67584322 + L1MB5 LINE L1 6074 6173 -1 387 282 26 0 chr4 134744026 134744143 -67584204 - Charlie1 DNA MER1_type -2639 122 3 520 328 78 26 chr4 134744568 134744913 -67583434 - L2 LINE L2 0 3313 2951 24 32 0 0 chr4 134746156 134746187 -67582160 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr4 134746732 134746766 -67581581 + AT_rich Low_complexity Low_complexity 1 34 0 1666 179 55 22 chr4 134746875 134747238 -67581109 - THE1C LTR MaLR 0 375 1 247 356 81 36 chr4 134747639 134747861 -67580486 - MIR SINE MIR -29 233 2 21 0 0 0 chr4 134748825 134748846 -67579501 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 134749673 134749695 -67578652 + AT_rich Low_complexity Low_complexity 1 22 0 267 31 0 0 chr4 134750725 134750757 -67577590 + (TTA)n Simple_repeat Simple_repeat 2 33 0 206 392 14 35 chr4 134750993 134751136 -67577211 - MER5A DNA MER1_type -13 176 37 236 234 104 58 chr4 134752027 134752181 -67576166 - Charlie1 DNA MER1_type 0 2761 2601 2247 191 84 38 chr4 134752183 134752810 -67575537 + L1MD3 LINE L1 7322 7977 -18 1259 219 121 5 chr4 134752817 134753238 -67575109 - Charlie1 DNA MER1_type -39 2722 2253 4046 184 33 19 chr4 134753241 134754436 -67573911 + L1MB2 LINE L1 5383 6587 -82 1365 185 94 40 chr4 134754438 134754789 -67573558 - THE1C LTR MaLR 0 375 6 5992 161 31 13 chr4 134754794 134755816 -67572531 - THE1C-int LTR MaLR 0 1580 540 297 342 79 0 chr4 134755816 134755968 -67572379 - Charlie1 DNA MER1_type -1536 1225 1062 29502 34 2 1 chr4 134755972 134760335 -67568012 - L1PA3 LINE L1 0 6155 1789 23 33 0 0 chr4 134761013 134761043 -67567304 + AT_rich Low_complexity Low_complexity 1 30 0 341 272 0 35 chr4 134761802 134761916 -67566431 + L1ME3 LINE L1 6044 6153 -9 317 325 83 25 chr4 134761966 134762123 -67566224 - L2 LINE L2 0 3272 3107 255 31 0 0 chr4 134762511 134762543 -67565804 + (TC)n Simple_repeat Simple_repeat 1 32 0 296 297 49 38 chr4 134762659 134762849 -67565498 - L1ME LINE L1 -468 5702 5508 191 61 30 0 chr4 134762866 134762899 -67565448 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 342 0 0 0 chr4 134763011 134763049 -67565298 + (TTG)n Simple_repeat Simple_repeat 1 38 0 4243 112 20 5 chr4 134763193 134763830 -67564517 + L1PA11 LINE L1 5527 6173 -1 743 282 70 7 chr4 134764014 134764298 -67564049 + LTR40b LTR ERVL 1 302 -160 3012 97 33 7 chr4 134764312 134764702 -67563645 + MLT2A1 LTR ERVL 1 404 -40 693 97 0 0 chr4 134764702 134764805 -67563542 + (TA)n Simple_repeat Simple_repeat 1 103 0 3012 97 33 7 chr4 134764805 134764836 -67563511 + MLT2A1 LTR ERVL 404 433 -11 23 78 0 0 chr4 134765718 134765769 -67562578 + AT_rich Low_complexity Low_complexity 1 51 0 498 243 32 36 chr4 134766773 134766966 -67561381 - L1ME1 LINE L1 -19 6147 6000 22817 154 24 26 chr4 134767433 134770038 -67558309 + L1MA3 LINE L1 12 2620 -5104 1965 136 31 0 chr4 134770038 134770325 -67558022 - AluSp SINE Alu -16 297 2 22817 154 24 26 chr4 134770325 134771870 -67556477 + L1MA3 LINE L1 2620 4166 -3558 1762 178 0 0 chr4 134771870 134772146 -67556201 + AluSx SINE Alu 1 276 -36 22817 154 24 26 chr4 134772146 134775720 -67552627 + L1MA3 LINE L1 4166 7724 0 22 70 0 0 chr4 134775722 134775765 -67552582 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 134776203 134776225 -67552122 + AT_rich Low_complexity Low_complexity 1 22 0 2030 152 0 0 chr4 134776711 134777013 -67551334 - AluSx SINE Alu -10 302 1 195 42 0 0 chr4 134777749 134777773 -67550574 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 39 0 0 0 chr4 134779067 134779106 -67549241 + AT_rich Low_complexity Low_complexity 1 39 0 4044 247 142 29 chr4 134779123 134780805 -67547542 - L1MD1 LINE L1 0 7808 5956 295 209 164 0 chr4 134780955 134781022 -67547325 + MLT1A1 LTR MaLR 1 78 -296 * 2600 232 52 99 chr4 134781011 134782157 -67546190 + MER52A LTR ERV1 663 1755 0 1678 178 17 3 chr4 134782198 134782485 -67545862 + MLT1A1 LTR MaLR 75 365 0 21 0 0 0 chr4 134782608 134782629 -67545718 + AT_rich Low_complexity Low_complexity 1 21 0 303 346 11 45 chr4 134782671 134782937 -67545410 - L1M4 LINE L1 -3316 2830 2574 1624 250 131 11 chr4 134782944 134783492 -67544855 + MER90 LTR ERV1 1 614 0 2302 68 0 39 chr4 134783808 134784118 -67544229 + AluY SINE Alu 1 298 -13 350 320 105 39 chr4 134784646 134785130 -67543217 - HAL1b LINE L1 -735 613 98 21 0 0 0 chr4 134785494 134785515 -67542832 + AT_rich Low_complexity Low_complexity 1 21 0 318 308 128 73 chr4 134785817 134786145 -67542202 + MLT1L LTR MaLR 218 563 -52 634 225 0 8 chr4 134786353 134786473 -67541874 + FLAM_C SINE Alu 9 127 -16 1124 301 108 68 chr4 134787149 134787970 -67540377 - L2 LINE L2 -1236 2078 1225 702 116 0 0 chr4 134788990 134789102 -67539245 - L1MA7 LINE L1 -5 6286 6175 2002 146 3 3 chr4 134790769 134791070 -67537277 + AluSg SINE Alu 1 301 -9 22 0 0 0 chr4 134791771 134791793 -67536554 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 134792642 134792666 -67535681 + AT_rich Low_complexity Low_complexity 1 24 0 367 310 23 35 chr4 134792818 134792992 -67535355 - L2 LINE L2 -1268 2046 1875 390 282 82 53 chr4 134793005 134793412 -67534935 + L1MC4 LINE L1 1027 1474 -4862 344 296 86 13 chr4 134793720 134793872 -67534475 - L1MCc LINE L1 -6151 272 110 1700 160 0 0 chr4 134793916 134794221 -67534126 - AluJb SINE Alu 0 342 38 395 318 59 54 chr4 134794404 134794791 -67533556 + L1MC4 LINE L1 1874 2262 -4134 424 277 54 22 chr4 134795062 134795286 -67533061 + L1MC4 LINE L1 2739 2969 -3246 356 304 50 73 chr4 134795436 134795696 -67532651 + L1MC4 LINE L1 4831 5084 -1131 403 242 11 0 chr4 134795823 134795918 -67532429 - FRAM SINE Alu -9 167 72 409 316 138 48 chr4 134796097 134796552 -67531795 + L1MC4 LINE L1 5387 5882 -1995 814 186 19 0 chr4 134797072 134797233 -67531114 - L1MA8 LINE L1 -61 6230 6067 939 239 23 0 chr4 134798897 134799115 -67529232 - MER58A DNA MER1_type -1 223 1 265 254 64 27 chr4 134799258 134799368 -67528979 + MIR SINE MIR 79 192 -70 1429 116 13 31 chr4 134799675 134799899 -67528448 + AluSg/x SINE Alu 76 295 -17 3425 184 80 0 chr4 134800949 134801640 -67526707 + Tigger2 DNA MER2_type 1 746 -1972 1301 188 42 0 chr4 134801707 134801947 -67526400 + Tigger2 DNA MER2_type 2469 2718 0 4621 170 52 32 chr4 134801955 134803044 -67525303 + L1MA9 LINE L1 5158 6273 -39 819 281 80 20 chr4 134803188 134803637 -67524710 - LTR1B LTR ERV1 -318 508 33 712 169 29 17 chr4 134803714 134803886 -67524461 + MER96B DNA MER1_type? 62 235 -182 726 294 94 17 chr4 134804370 134804605 -67523742 + MIR SINE MIR 1 253 -9 27 0 0 0 chr4 134804882 134804909 -67523438 + AT_rich Low_complexity Low_complexity 1 27 0 267 250 23 0 chr4 134805367 134805455 -67522892 + L1MC4 LINE L1 6683 6772 -1339 208 272 61 67 chr4 134806793 134806973 -67521374 + L2 LINE L2 1920 2098 -1216 495 247 38 60 chr4 134806973 134807208 -67521139 - LTR37B LTR ERV1 0 468 239 1484 180 4 4 chr4 134807310 134807566 -67520781 - MLT1D LTR MaLR 0 505 250 246 167 0 0 chr4 134807590 134807626 -67520721 - MLT1D LTR MaLR -469 36 1 1520 191 7 10 chr4 134808003 134808306 -67520041 - AluJo SINE Alu -10 302 1 943 152 5 57 chr4 134808668 134808878 -67519469 + L1MA9 LINE L1 6111 6309 -3 2204 100 0 16 chr4 134809455 134809764 -67518583 - AluSx SINE Alu -8 304 1 21 36 0 0 chr4 134810387 134810415 -67517932 + AT_rich Low_complexity Low_complexity 1 28 0 332 72 58 0 chr4 134810575 134810644 -67517703 + (TA)n Simple_repeat Simple_repeat 1 73 0 239 240 177 10 chr4 134810695 134810791 -67517556 + MLT1K LTR MaLR 414 525 -63 207 0 0 0 chr4 134810900 134810923 -67517424 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 8770 66 4 140 chr4 134810932 134812501 -67515846 - SVA Other Other -19 1367 13 5992 20 9 0 chr4 134812601 134813302 -67515045 + L1PA2 LINE L1 5448 6154 -1 2259 107 3 0 chr4 134815425 134815734 -67512613 - AluSp SINE Alu -3 310 1 216 157 0 39 chr4 134817028 134817079 -67511268 + T-rich Low_complexity Low_complexity 4 52 0 898 289 46 17 chr4 134817243 134817589 -67510758 - L1MC4a LINE L1 -111 7697 7342 670 233 20 82 chr4 134817589 134817760 -67510587 + L1ME LINE L1 715 860 -5210 2190 127 3 0 chr4 134817760 134818067 -67510280 + AluSp SINE Alu 1 308 -5 670 233 20 82 chr4 134818067 134818200 -67510147 + L1ME LINE L1 860 1000 -5070 1656 196 6 3 chr4 134818912 134819223 -67509124 - AluJo SINE Alu 0 312 1 2081 129 28 62 chr4 134819602 134819848 -67508499 + THE1C LTR MaLR 1 231 -144 2187 132 5 45 chr4 134819848 134820227 -67508120 - THE1B LTR MaLR 0 364 1 2081 129 28 62 chr4 134820227 134820368 -67507979 + THE1C LTR MaLR 231 375 0 234 291 43 71 chr4 134821363 134821504 -67506843 + MIR SINE MIR 102 238 -24 21 57 0 0 chr4 134821777 134821812 -67506535 + AT_rich Low_complexity Low_complexity 1 35 0 227 225 194 0 chr4 134822758 134822887 -67505460 - L1MEc LINE L1 -4088 2308 2155 2317 179 43 16 chr4 134822891 134823377 -67504970 - L1MC1 LINE L1 -5 6328 5830 380 280 0 0 chr4 134823470 134823577 -67504770 - L1MC4 LINE L1 -138 7904 7798 360 299 29 7 chr4 134823660 134823797 -67504550 + L1ME LINE L1 5528 5667 -503 942 223 139 8 chr4 134823815 134824066 -67504281 + L1M3e LINE L1 1 284 -6746 2085 234 204 25 chr4 134824068 134825032 -67503315 + L1M3e LINE L1 1028 2169 -4868 687 188 0 0 chr4 134825032 134825160 -67503187 + L1MA9 LINE L1 5644 5771 -520 1295 157 9 0 chr4 134825163 134825379 -67502968 + L1MA9 LINE L1 6036 6253 -59 1455 251 66 43 chr4 134825381 134826094 -67502253 + MER49 LTR ERV1 4 913 -10 275 315 33 0 chr4 134827643 134827735 -67500612 + L1MB3 LINE L1 5490 5584 -2224 198 0 0 0 chr4 134828129 134828151 -67500196 + (TCTA)n Simple_repeat Simple_repeat 3 24 0 202 54 27 27 chr4 134828161 134828198 -67500149 + (TC)n Simple_repeat Simple_repeat 2 38 0 366 268 84 34 chr4 134828198 134828377 -67499970 + L1MB3 LINE L1 5602 5789 -2019 257 187 13 0 chr4 134828767 134828842 -67499505 + (TA)n Simple_repeat Simple_repeat 1 76 0 603 39 0 13 chr4 134829114 134829191 -67499156 - MLT1B LTR MaLR -9 381 306 2350 98 0 0 chr4 134879459 134879764 -67448583 + AluSg SINE Alu 1 305 -5 22 0 0 0 chr4 134881397 134881419 -67446928 + AT_rich Low_complexity Low_complexity 1 22 0 404 182 0 13 chr4 134882042 134882119 -67446228 + MLT1B LTR MaLR 315 390 0 955 197 78 12 chr4 134882119 134882363 -67445984 - MER58 DNA MER1_type -56 285 26 1465 228 32 24 chr4 134882389 134882762 -67445585 + MER97c DNA MER1_type? 198 573 -517 357 225 26 84 chr4 134882853 134883044 -67445303 + MER97c DNA MER1_type? 899 1078 -12 490 326 137 15 chr4 134885002 134885345 -67443002 - HAL1 LINE L1 -1301 1206 822 2223 103 3 0 chr4 134886029 134886321 -67442026 - AluSg SINE Alu -17 293 1 197 338 91 61 chr4 134886569 134886800 -67441547 + L2 LINE L2 2949 3186 -86 245 274 75 27 chr4 134886955 134887101 -67441246 - MER103 DNA DNA -7 159 7 189 0 0 0 chr4 134887630 134887651 -67440696 + (A)n Simple_repeat Simple_repeat 1 21 0 236 325 20 66 chr4 134888089 134888240 -67440107 + MIR3 SINE MIR 16 159 -49 1435 187 22 0 chr4 134888271 134888549 -67439798 + L1MB3 LINE L1 5893 6176 -7 21 0 0 0 chr4 134888549 134888570 -67439777 + AT_rich Low_complexity Low_complexity 1 21 0 2730 136 9 18 chr4 134889698 134890147 -67438200 - MER65A LTR ERV1 0 445 1 2769 258 46 16 chr4 134890147 134890958 -67437389 - MER65A-int LTR ERV1 0 4871 4037 1411 213 51 18 chr4 134890975 134891364 -67436983 - MER65A-int LTR ERV1 -1124 3812 3411 24 0 0 0 chr4 134891582 134891606 -67436741 + AT_rich Low_complexity Low_complexity 1 24 0 1585 109 5 0 chr4 134891609 134891830 -67436517 - AluSp SINE Alu -8 305 84 200 337 0 60 chr4 134891919 134892002 -67436345 - MIR SINE MIR -72 136 59 1856 196 40 53 chr4 134892079 134892573 -67435774 + MLT1D LTR MaLR 18 505 0 297 194 41 71 chr4 134893926 134894024 -67434323 + MER77 LTR ERV1 102 196 -409 378 0 0 0 chr4 134894099 134894141 -67434206 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1340 235 25 7 chr4 134894147 134894295 -67434052 - AluJo SINE Alu -30 282 125 189 107 0 0 chr4 134894295 134894323 -67434024 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1340 235 25 7 chr4 134894323 134894451 -67433896 - AluJo SINE Alu -187 125 1 1263 272 47 43 chr4 134894508 134895000 -67433347 + MER21B LTR ERV1 221 714 -149 360 0 0 0 chr4 134895040 134895080 -67433267 + (TA)n Simple_repeat Simple_repeat 2 41 0 382 273 46 35 chr4 134895512 134895695 -67432652 - MIR SINE MIR -49 213 30 292 302 35 0 chr4 134895820 134895906 -67432441 - L2 LINE L2 0 3272 3184 297 0 0 0 chr4 134896282 134896315 -67432032 + (GGAA)n Simple_repeat Simple_repeat 2 34 0 203 329 13 0 chr4 134898925 134899001 -67429346 - MIR SINE MIR -128 134 58 21 0 0 0 chr4 134899656 134899677 -67428670 + AT_rich Low_complexity Low_complexity 1 21 0 227 369 12 12 chr4 134899866 134899950 -67428397 + L2 LINE L2 3170 3253 -19 181 271 12 12 chr4 134899950 134900035 -67428312 + GA-rich Low_complexity Low_complexity 4 88 0 23 54 0 0 chr4 134902524 134902561 -67425786 + AT_rich Low_complexity Low_complexity 1 37 0 257 0 30 0 chr4 134903447 134903480 -67424867 + (TC)n Simple_repeat Simple_repeat 1 34 0 1004 189 11 5 chr4 134903695 134903885 -67424462 - MLT1C LTR MaLR -276 191 1 289 246 0 0 chr4 134903885 134903946 -67424401 + MER58 DNA MER1_type 2360 2420 0 487 287 0 24 chr4 134903985 134904149 -67424198 - MER97c DNA MER1_type? -911 179 20 2027 125 20 16 chr4 134904242 134904546 -67423801 - AluSx SINE Alu -7 305 1 43060 30 21 1 chr4 134905375 134911405 -67416942 - L1PA2 LINE L1 -3 6152 1 1912 104 8 4 chr4 134911729 134911988 -67416359 + AluSq SINE Alu 39 298 -15 220 315 0 14 chr4 134912453 134912526 -67415821 + CT-rich Low_complexity Low_complexity 3 74 0 999 159 0 35 chr4 134912834 134913004 -67415343 - L1PA8A LINE L1 -1 6130 5967 29713 43 35 2 chr4 134913104 134916867 -67411480 - L1P LINE L1 -2256 3890 2 3535 17 0 0 chr4 134916871 134917277 -67411070 - L1P1 LINE L1 -333 5822 5417 360 339 137 9 chr4 134917480 134917707 -67410640 + MIR SINE MIR 1 256 -6 1576 166 57 18 chr4 134918109 134918392 -67409955 + AluJo SINE Alu 1 294 -18 201 138 0 0 chr4 134918976 134919005 -67409342 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 231 217 14 29 chr4 134920912 134920981 -67407366 + (TA)n Simple_repeat Simple_repeat 2 69 0 25 31 0 0 chr4 134922454 134922486 -67405861 + AT_rich Low_complexity Low_complexity 1 32 0 223 252 195 0 chr4 134922543 134922666 -67405681 + L2 LINE L2 3159 3305 -8 60 110 0 0 chr4 134922874 134923137 -67405210 + AT_rich Low_complexity Low_complexity 1 263 0 22 0 0 0 chr4 134923249 134923271 -67405076 + AT_rich Low_complexity Low_complexity 1 22 0 619 213 110 0 chr4 134923377 134923504 -67404843 - FRAM SINE Alu -39 137 1 1043 111 94 0 chr4 134923572 134923743 -67404604 - L1PA16 LINE L1 -10 6156 5970 907 196 0 13 chr4 134923877 134924035 -67404312 + FRAM SINE Alu 1 153 -23 1052 222 14 0 chr4 134924232 134924453 -67403894 - MER58A DNA MER1_type 0 224 1 23 0 0 0 chr4 134924594 134924617 -67403730 + AT_rich Low_complexity Low_complexity 1 23 0 1774 175 11 0 chr4 134925389 134925675 -67402672 + AluJo SINE Alu 1 289 -23 503 195 8 0 chr4 134925675 134925793 -67402554 + GA-rich Low_complexity Low_complexity 1 119 0 819 97 28 7 chr4 134925805 134925949 -67402398 + GA-rich Low_complexity Low_complexity 2 148 0 275 246 160 31 chr4 134928761 134928935 -67399412 - MIR SINE MIR -41 221 17 26 64 0 0 chr4 134929283 134929330 -67399017 + AT_rich Low_complexity Low_complexity 1 47 0 227 267 22 0 chr4 134929923 134930013 -67398334 + GA-rich Low_complexity Low_complexity 3 94 0 382 303 36 67 chr4 134930701 134930896 -67397451 + MER5A DNA MER1_type 1 189 0 326 45 23 0 chr4 134930967 134931011 -67397336 - MADE1 DNA Mariner -35 45 1 861 203 57 28 chr4 134931915 134932127 -67396220 + MER58A DNA MER1_type 3 220 -4 21 0 0 0 chr4 134932226 134932247 -67396100 + AT_rich Low_complexity Low_complexity 1 21 0 371 300 77 77 chr4 134933023 134933301 -67395046 - L2 LINE L2 -468 2846 2566 231 36 0 0 chr4 134933301 134933329 -67395018 + (AAATG)n Simple_repeat Simple_repeat 4 31 0 474 348 125 28 chr4 134933353 134933963 -67394384 - L2 LINE L2 -918 2396 1728 998 317 63 45 chr4 134934212 134935915 -67392432 + L1ME3A LINE L1 4416 6153 -17 201 327 164 19 chr4 134937567 134937671 -67390676 - L2 LINE L2 -4 3309 3191 833 271 54 0 chr4 134937682 134937903 -67390444 - Charlie8 DNA MER1_type -2183 234 2 228 299 190 29 chr4 134939158 134939332 -67389015 + MIR SINE MIR 3 204 -58 288 286 20 41 chr4 134939369 134939467 -67388880 + MIR SINE MIR 65 160 -102 54 0 0 0 chr4 134940290 134940344 -67388003 + AT_rich Low_complexity Low_complexity 1 54 0 1986 104 50 0 chr4 134941043 134941321 -67387026 + AluSx SINE Alu 20 311 -1 279 122 0 0 chr4 134941353 134941402 -67386945 - L1MA9 LINE L1 0 6312 6264 32 106 0 0 chr4 134941692 134941815 -67386532 + AT_rich Low_complexity Low_complexity 1 123 0 28 0 0 0 chr4 134941907 134941935 -67386412 + AT_rich Low_complexity Low_complexity 1 28 0 1496 201 47 30 chr4 134942990 134943354 -67384993 + MLT1A2 LTR MaLR 4 373 -1 407 323 75 12 chr4 134943538 134943699 -67384648 - L2 LINE L2 -800 2514 2344 199 351 53 9 chr4 134943775 134943889 -67384458 - MER5A DNA MER1_type -35 154 36 204 40 0 0 chr4 134945190 134945215 -67383132 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 2425 44 0 13 chr4 134946044 134946342 -67382005 - AluY SINE Alu -15 296 3 474 120 0 0 chr4 134946798 134946873 -67381474 + (GGAA)n Simple_repeat Simple_repeat 2 76 0 2277 99 0 0 chr4 134947194 134947497 -67380850 - AluY SINE Alu -8 303 1 263 238 16 0 chr4 134948506 134948569 -67379778 + L2 LINE L2 3245 3308 -5 281 241 213 53 chr4 134948892 134949099 -67379248 - MIR SINE MIR 0 262 23 1156 232 29 50 chr4 134949307 134949686 -67378661 + MLT2C1 LTR ERVL 26 396 -1 687 203 89 25 chr4 134949761 134949963 -67378384 + MLT1J2 LTR MaLR 7 221 -229 6307 167 110 49 chr4 134950074 134951624 -67376723 + MER52A LTR ERV1 1 1755 0 249 247 27 0 chr4 134951624 134951696 -67376651 + MLT1J1 LTR MaLR 373 446 0 1199 158 13 4 chr4 134952241 134952469 -67375878 - L1MA6 LINE L1 -5 6295 6066 1847 112 4 11 chr4 134955205 134955474 -67372873 + AluSx SINE Alu 36 302 -10 405 215 8 16 chr4 134955485 134955606 -67372741 + GA-rich Low_complexity Low_complexity 2 121 0 1614 188 3 0 chr4 134956136 134956461 -67371886 - AluJb SINE Alu 0 326 1 769 222 28 60 chr4 134956463 134956679 -67371668 - MER20 DNA MER1_type -10 209 1 233 247 10 72 chr4 134956732 134956829 -67371518 + L2 LINE L2 3223 3313 0 240 301 251 6 chr4 134957964 134958127 -67370220 - MIR SINE MIR -11 251 49 24 32 0 0 chr4 134959628 134959659 -67368688 + AT_rich Low_complexity Low_complexity 1 31 0 216 323 21 10 chr4 134960583 134960679 -67367668 - L2 LINE L2 -1250 2064 1968 1636 342 87 23 chr4 134960693 134961766 -67366581 - L2 LINE L2 -335 2937 1799 947 276 75 17 chr4 134961767 134962259 -67366088 + MLT2E LTR ERVL 1 582 -46 1141 334 130 30 chr4 134962296 134963350 -67364997 - L2 LINE L2 -1512 1802 644 237 217 167 0 chr4 134963367 134963427 -67364920 - MER96 DNA MER1_type? -41 134 65 1337 305 34 11 chr4 134964694 134965137 -67363210 - LTR16B LTR ERVL -9 455 3 251 191 0 29 chr4 134965418 134965486 -67362861 - MER20B DNA MER1_type -28 755 690 598 193 138 6 chr4 134965487 134965668 -67362679 - MER20B DNA MER1_type -64 719 515 5055 147 62 33 chr4 134965806 134966783 -67361564 - Tigger1 DNA MER2_type 0 2418 1413 390 57 0 0 chr4 134966783 134966836 -67361511 + L1PA6 LINE L1 6102 6154 0 1278 244 35 144 chr4 134966836 134967215 -67361132 - L2 LINE L2 -359 2955 2625 287 87 22 0 chr4 134967215 134967261 -67361086 + MADE1 DNA Mariner 33 79 -1 1278 244 35 144 chr4 134967261 134967488 -67360859 - L2 LINE L2 -689 2625 2375 2157 125 0 6 chr4 134967553 134967866 -67360481 - AluSx SINE Alu -1 311 1 21 0 0 0 chr4 134968227 134968248 -67360099 + AT_rich Low_complexity Low_complexity 1 21 0 645 291 69 53 chr4 134968391 134968600 -67359747 - MER20B DNA MER1_type -362 421 204 2288 112 0 0 chr4 134968600 134968904 -67359443 + AluSg1 SINE Alu 1 304 -5 645 291 69 53 chr4 134968904 134969014 -67359333 - MER20B DNA MER1_type -579 204 97 1683 225 70 43 chr4 134969059 134969503 -67358844 - MER21B LTR ERV1 -48 815 360 1772 210 40 18 chr4 134969513 134969913 -67358434 + L1MC1 LINE L1 5908 6316 -17 405 319 93 44 chr4 134970293 134970657 -67357690 - L1ME LINE L1 -356 5765 5384 473 309 60 36 chr4 134971016 134971482 -67356865 - L1ME LINE L1 -1199 4947 4471 308 224 0 95 chr4 134971585 134971701 -67356646 - L1ME3A LINE L1 -89 6081 5977 243 220 92 64 chr4 134971732 134971841 -67356506 - Charlie8 DNA MER1_type -668 1749 1638 3781 221 50 49 chr4 134971841 134973959 -67354388 - L1 LINE L1 -3346 4219 2079 422 299 64 42 chr4 134973988 134974252 -67354095 - Charlie8 DNA MER1_type -777 1640 1371 670 296 62 31 chr4 134974367 134974755 -67353592 - MER93a LTR ERV1 -2 400 1 31 76 0 0 chr4 134974900 134974966 -67353381 + AT_rich Low_complexity Low_complexity 1 66 0 31 0 0 0 chr4 134975374 134975405 -67352942 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 134978141 134978163 -67350184 + AT_rich Low_complexity Low_complexity 1 22 0 1901 227 49 28 chr4 134979578 134980094 -67348253 + MLT2B3 LTR ERVL 1 481 -39 313 121 60 9 chr4 134980096 134980212 -67348135 + (TA)n Simple_repeat Simple_repeat 2 123 0 1994 144 16 0 chr4 134980303 134980609 -67347738 + AluSx SINE Alu 1 311 -1 197 286 0 0 chr4 134981079 134981121 -67347226 - L2 LINE L2 -211 3061 3020 23 33 0 0 chr4 134981232 134981262 -67347085 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr4 134981399 134981434 -67346913 + AT_rich Low_complexity Low_complexity 1 35 0 1481 196 29 16 chr4 134981613 134981919 -67346428 - AluJo SINE Alu 0 312 3 23 33 0 0 chr4 134982965 134982995 -67345352 + AT_rich Low_complexity Low_complexity 1 30 0 26 39 0 20 chr4 134983280 134983303 -67345044 + AT_rich Low_complexity Low_complexity 1 23 -27 2374 101 0 0 chr4 134983303 134983611 -67344736 - AluSx SINE Alu -4 308 1 26 39 0 20 chr4 134983611 134983638 -67344709 + AT_rich Low_complexity Low_complexity 23 50 0 21 57 0 0 chr4 134983974 134984009 -67344338 + AT_rich Low_complexity Low_complexity 1 35 0 230 294 63 63 chr4 134984415 134984558 -67343789 + MIR SINE MIR 32 174 -88 2257 83 0 26 chr4 134985540 134985842 -67342505 + AluY SINE Alu 9 302 -9 440 61 0 15 chr4 134985960 134986026 -67342321 - L1PA16 LINE L1 -4 6162 6098 4886 184 23 10 chr4 134986027 134987671 -67340676 - L1PA16 LINE L1 -105 6061 4383 180 77 0 0 chr4 134987671 134987697 -67340650 + (TG)n Simple_repeat Simple_repeat 2 27 0 4886 184 23 10 chr4 134987697 134987953 -67340394 - L1PA16 LINE L1 -1783 4383 4132 433 376 44 4 chr4 134988887 134989137 -67339210 - MIR SINE MIR -2 260 1 1594 175 54 43 chr4 134989809 134990180 -67338167 - THE1C LTR MaLR 0 375 1 9282 145 12 33 chr4 134990185 134991787 -67336560 - THE1C-int LTR MaLR -6 1574 6 1577 171 66 33 chr4 134991793 134992156 -67336191 - THE1C LTR MaLR 0 375 1 810 302 127 31 chr4 134992173 134992560 -67335787 - MLT2F LTR ERVL -239 424 1 205 302 35 23 chr4 134992563 134992649 -67335698 + L2 LINE L2 2594 2680 -634 1590 224 95 47 chr4 134993767 134993793 -67334554 + MLT1E3 LTR MaLR 139 162 -462 1898 135 43 0 chr4 134993793 134994074 -67334273 + AluSg SINE Alu 4 296 -14 1590 224 95 47 chr4 134994074 134994128 -67334219 + MLT1E3 LTR MaLR 162 212 -412 2172 137 0 0 chr4 134994128 134994435 -67333912 + AluSx SINE Alu 1 307 -5 1590 224 95 47 chr4 134994435 134994817 -67333530 + MLT1E3 LTR MaLR 212 624 0 986 188 72 91 chr4 134995643 134995755 -67332592 - MER58B DNA MER1_type -2095 325 212 2118 109 0 17 chr4 134995755 134996057 -67332290 + AluSc SINE Alu 1 297 -12 986 188 72 91 chr4 134996057 134996263 -67332084 - MER58B DNA MER1_type -2208 212 13 23 33 0 0 chr4 134997233 134997263 -67331084 + AT_rich Low_complexity Low_complexity 1 30 0 560 317 112 9 chr4 134998642 134998866 -67329481 + MIR SINE MIR 16 262 0 299 181 9 29 chr4 134998944 134999049 -67329298 + (TA)n Simple_repeat Simple_repeat 1 103 0 21 71 0 0 chr4 134999297 134999339 -67329008 + AT_rich Low_complexity Low_complexity 1 42 0 305 347 172 24 chr4 134999619 134999991 -67328356 + L2 LINE L2 2416 2842 -472 1024 156 137 24 chr4 135000179 135000390 -67327957 + MER1B DNA MER1_type 1 235 -62 1963 166 0 0 chr4 135001418 135001714 -67326633 - AluSx SINE Alu -14 298 3 1017 118 0 0 chr4 135001715 135001851 -67326496 - AluSq/x SINE Alu -177 136 1 261 327 40 13 chr4 135002479 135002629 -67325718 - L1MEd LINE L1 -5279 840 687 1357 207 90 0 chr4 135004258 135004548 -67323799 + L1PB4 LINE L1 5836 6151 -5 7892 230 40 20 chr4 135004561 135007129 -67321218 + L1MC1 LINE L1 2762 5430 -903 2414 116 36 0 chr4 135007129 135007491 -67320856 - THE1C LTR MaLR 0 375 1 7892 230 40 20 chr4 135007491 135008409 -67319938 + L1MC1 LINE L1 5430 6328 -5 364 202 140 9 chr4 135008593 135008707 -67319640 - MER103 DNA DNA -12 154 26 623 300 5 38 chr4 135008724 135008934 -67319413 - MIR SINE MIR -15 247 45 21 0 0 0 chr4 135009102 135009123 -67319224 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 135010883 135010907 -67317440 + AT_rich Low_complexity Low_complexity 1 24 0 432 289 59 84 chr4 135012225 135012547 -67315800 + L1MEd LINE L1 888 1201 -4918 14725 93 26 2 chr4 135012660 135015557 -67312790 + L1PA7 LINE L1 3215 6150 -4 4889 84 35 137 chr4 135015966 135016886 -67311461 + LTR12 LTR ERV1 1 826 0 571 125 29 10 chr4 135017676 135017780 -67310567 + L1MA5A LINE L1 6189 6294 -3 496 309 57 19 chr4 135017837 135018226 -67310121 - L1ME LINE L1 -302 5819 5411 5548 116 7 0 chr4 135018620 135019468 -67308879 - L1PA8A LINE L1 -938 5208 4355 2582 91 6 0 chr4 135019466 135019872 -67308475 + L1PA8A LINE L1 5195 5602 -529 * 12162 23 42 0 chr4 135019972 135022128 -67306219 + L1PA2 LINE L1 3964 6155 0 2775 38 3 3 chr4 135022128 135022462 -67305885 + L1PA3 LINE L1 5814 6152 -3 2351 70 0 3 chr4 135022697 135022984 -67305363 + AluY SINE Alu 1 286 -25 2171 159 37 8 chr4 135023045 135023447 -67304900 - MLT2D LTR ERVL 0 414 1 640 156 0 0 chr4 135023678 135023787 -67304560 - HY1 scRNA scRNA -2 110 2 1242 210 189 5 chr4 135025151 135025507 -67302840 + MLT1D LTR MaLR 10 421 -46 213 270 81 0 chr4 135025511 135025585 -67302762 - MIR SINE MIR -32 230 151 632 288 19 6 chr4 135025586 135025746 -67302601 - MIR SINE MIR -62 200 39 542 314 43 37 chr4 135025810 135026109 -67302238 - LTR16C LTR ERVL 0 491 191 21 0 0 0 chr4 135027149 135027170 -67301177 + AT_rich Low_complexity Low_complexity 1 21 0 1246 257 69 24 chr4 135028368 135028745 -67299602 + MSTD LTR MaLR 3 396 0 442 243 63 9 chr4 135030166 135030277 -67298070 + MER69 DNA AcHobo 8 124 -1102 31 0 0 0 chr4 135030402 135030433 -67297914 + AT_rich Low_complexity Low_complexity 1 31 0 1354 236 7 4 chr4 135030433 135030709 -67297638 - AluJb SINE Alu -35 277 1 235 122 41 0 chr4 135030940 135030989 -67297358 + (TA)n Simple_repeat Simple_repeat 1 51 0 824 216 88 40 chr4 135031002 135031127 -67297220 + MER69 DNA AcHobo 2156 2274 -252 216 0 0 0 chr4 135031127 135031151 -67297196 + (TA)n Simple_repeat Simple_repeat 1 24 0 824 216 88 40 chr4 135031151 135031377 -67296970 + MER69 DNA AcHobo 2274 2524 -2 15664 198 22 20 chr4 135031417 135035646 -67292701 + L1PA16 LINE L1 2 4239 -2630 1735 126 0 30 chr4 135035646 135035969 -67292378 + AluSg SINE Alu 27 341 0 15664 198 22 20 chr4 135035969 135038551 -67289796 + L1PA16 LINE L1 4239 6815 -54 26 0 0 0 chr4 135038942 135038968 -67289379 + AT_rich Low_complexity Low_complexity 1 26 0 862 127 102 0 chr4 135039298 135039455 -67288892 - L1PBa LINE L1 -4440 2423 2251 363 202 0 26 chr4 135039462 135039557 -67288790 + L1 LINE L1 3046 3139 -3007 207 0 0 0 chr4 135039557 135039580 -67288767 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 363 202 0 26 chr4 135039580 135039598 -67288749 + L1 LINE L1 3139 3156 -2990 378 0 0 0 chr4 135041226 135041268 -67287079 + (CA)n Simple_repeat Simple_repeat 2 43 0 264 346 71 31 chr4 135042138 135042265 -67286082 + L2 LINE L2 3180 3311 -2 378 42 0 0 chr4 135042655 135042703 -67285644 + (CA)n Simple_repeat Simple_repeat 2 49 0 737 198 189 22 chr4 135043325 135043547 -67284800 + MIR SINE MIR 2 260 -2 187 335 120 20 chr4 135045962 135046162 -67282185 + L2 LINE L2 2372 2591 -723 218 209 0 0 chr4 135047271 135047314 -67281033 + L2 LINE L2 3271 3313 0 293 180 49 16 chr4 135047552 135047613 -67280734 - MIR3 SINE MIR -2 206 144 372 280 84 9 chr4 135047788 135047895 -67280452 - MIR SINE MIR -73 135 21 644 165 71 0 chr4 135049388 135049558 -67278789 - MER53 DNA DNA -3 186 5 317 256 0 12 chr4 135050318 135050400 -67277947 - L1MC4 LINE L1 -1350 6692 6612 848 333 62 42 chr4 135050849 135051282 -67277065 + L1M3a LINE L1 11 452 -5503 9750 213 36 40 chr4 135051711 135054609 -67273738 + L1M4 LINE L1 539 3399 -2929 2090 141 3 0 chr4 135054609 135054914 -67273433 + AluSx SINE Alu 1 306 -6 9750 213 36 40 chr4 135054914 135056009 -67272338 + L1M4 LINE L1 3399 4496 -1832 1278 214 21 0 chr4 135056271 135056505 -67271842 - MER8 DNA MER2_type 0 239 1 2682 161 97 4 chr4 135056694 135057198 -67271149 + LTR64 LTR ERVK 8 558 0 2457 168 67 5 chr4 135057656 135058103 -67270244 - MER44D DNA MER2_type 0 605 76 42284 37 22 4 chr4 135058109 135064152 -67264195 - L1PA3 LINE L1 -1 6154 1 527 202 0 0 chr4 135064340 135064429 -67263918 - MER44D DNA MER2_type -616 89 1 28 86 0 0 chr4 135067556 135067626 -67260721 + AT_rich Low_complexity Low_complexity 1 70 0 336 236 48 62 chr4 135068101 135068254 -67260093 - MIR SINE MIR -40 168 15 1077 195 66 60 chr4 135069737 135069838 -67258509 + L1MD2 LINE L1 6038 6137 -222 243 0 0 0 chr4 135069838 135069865 -67258482 + (CA)n Simple_repeat Simple_repeat 2 28 0 1077 195 66 60 chr4 135069865 135070081 -67258266 + L1MD2 LINE L1 6137 6357 -2 377 209 135 25 chr4 135070243 135070406 -67257941 + L1M4 LINE L1 5399 5579 -749 * 5038 226 48 48 chr4 135070390 135072316 -67256031 + L1PA12 LINE L1 1021 3750 -3834 346 291 212 20 chr4 135072446 135072649 -67255698 - MIR SINE MIR -16 246 5 1993 135 0 3 chr4 135074076 135074365 -67253982 - AluSx SINE Alu -24 288 1 25 0 0 0 chr4 135075221 135075246 -67253101 + AT_rich Low_complexity Low_complexity 1 25 0 1448 219 44 22 chr4 135075518 135075878 -67252469 + MLT1A2 LTR MaLR 1 368 -6 2181 113 7 0 chr4 135075982 135076275 -67252072 + AluSq SINE Alu 1 295 -18 267 164 0 0 chr4 135076825 135076886 -67251461 + CT-rich Low_complexity Low_complexity 2 62 0 22 56 0 0 chr4 135077076 135077112 -67251235 + AT_rich Low_complexity Low_complexity 1 36 0 510 353 47 14 chr4 135077162 135077522 -67250825 - L1M4 LINE L1 -1542 4604 4233 303 308 13 0 chr4 135077716 135077794 -67250553 + MER58A DNA MER1_type 1 79 -28 6313 19 1 1 chr4 135077881 135078655 -67249692 + L1PA3 LINE L1 5402 6175 0 252 104 21 42 chr4 135080067 135080115 -67248232 - MLT2A2 LTR ERVL -8 445 399 1465 168 66 80 chr4 135080179 135080694 -67247653 - MLT2A2 LTR ERVL -35 519 1 379 316 214 61 chr4 135081517 135081909 -67246438 - L3 LINE CR1 -26 1551 1100 2485 337 50 45 chr4 135082515 135082763 -67245584 - ERVL LTR ERVL -1898 3866 3621 234 0 0 0 chr4 135082763 135082789 -67245558 + (GGAGA)n Simple_repeat Simple_repeat 5 30 0 2485 337 50 45 chr4 135082789 135083468 -67244879 - ERVL LTR ERVL -2143 3621 2935 629 253 81 0 chr4 135083514 135083700 -67244647 + MER58B DNA MER1_type 141 341 0 22 0 0 0 chr4 135083912 135083934 -67244413 + AT_rich Low_complexity Low_complexity 1 22 0 2339 102 7 0 chr4 135084052 135084356 -67243991 + AluSp SINE Alu 1 306 -7 361 221 65 78 chr4 135084359 135084513 -67243834 + L1ME4a LINE L1 5756 5907 -214 31 0 0 0 chr4 135084679 135084710 -67243637 + AT_rich Low_complexity Low_complexity 1 31 0 254 340 73 39 chr4 135084710 135084969 -67243378 - L3 LINE CR1 -673 904 637 314 353 145 7 chr4 135085083 135085372 -67242975 + L2 LINE L2 2043 2371 -943 659 240 77 45 chr4 135085516 135085762 -67242585 + MIR SINE MIR 9 262 0 209 200 25 0 chr4 135087008 135087048 -67241299 + (TCTG)n Simple_repeat Simple_repeat 3 43 0 339 283 20 10 chr4 135087138 135087237 -67241110 + MIR SINE MIR 2 101 -161 766 167 364 0 chr4 135088031 135088270 -67240077 - LTR50 LTR ERVL 0 795 470 * 870 223 145 51 chr4 135088254 135088426 -67239921 - LTR50 LTR ERVL -427 368 213 443 45 0 0 chr4 135088426 135088492 -67239855 - L1MA7 LINE L1 0 6291 6226 870 223 145 51 chr4 135088492 135088651 -67239696 - LTR50 LTR ERVL -582 213 6 300 222 28 0 chr4 135088659 135088731 -67239616 - L1MA6 LINE L1 -34 6266 6193 28 29 0 0 chr4 135088731 135088766 -67239581 + AT_rich Low_complexity Low_complexity 1 35 0 2224 121 0 0 chr4 135088794 135089100 -67239247 - AluSc SINE Alu -3 306 1 308 217 17 58 chr4 135089471 135089591 -67238756 + CT-rich Low_complexity Low_complexity 6 120 0 597 196 9 0 chr4 135090743 135090850 -67237497 + MER45A DNA AcHobo 57 164 -14 23 0 0 0 chr4 135091557 135091580 -67236767 + AT_rich Low_complexity Low_complexity 1 23 0 2113 204 48 120 chr4 135093302 135094178 -67234169 - L1MC4 LINE L1 -1 8041 7229 2024 120 21 14 chr4 135094190 135094481 -67233866 - MER1B DNA MER1_type 0 339 47 1022 235 83 19 chr4 135094554 135094878 -67233469 - L1MC4 LINE L1 -826 7216 6872 2909 237 56 21 chr4 135094885 135096118 -67232229 - L1ME1 LINE L1 -84 6082 4719 2289 238 44 59 chr4 135096120 135097110 -67231237 - L1ME1 LINE L1 -1649 4497 3522 21 0 0 0 chr4 135099294 135099315 -67229032 + AT_rich Low_complexity Low_complexity 1 21 0 319 257 29 4 chr4 135099331 135099456 -67228891 + MIR3 SINE MIR 74 201 -7 253 285 37 20 chr4 135100883 135101023 -67227324 - MIR SINE MIR -29 233 23 2197 128 0 0 chr4 135101411 135101715 -67226632 + AluSc SINE Alu 3 306 -3 640 239 18 24 chr4 135103190 135103357 -67224990 + MIR SINE MIR 32 197 -65 240 345 0 24 chr4 135103387 135103471 -67224876 - MIR SINE MIR -109 99 18 459 0 0 0 chr4 135104723 135104774 -67223573 + (CA)n Simple_repeat Simple_repeat 1 51 0 187 211 0 26 chr4 135105507 135105545 -67222802 - MIR SINE MIR -134 74 38 340 338 54 36 chr4 135105573 135105795 -67222552 + MIR SINE MIR 37 262 0 822 226 6 11 chr4 135105848 135106025 -67222322 - FRAM SINE Alu 0 176 1 21 0 0 0 chr4 135106061 135106082 -67222265 + AT_rich Low_complexity Low_complexity 1 21 0 373 297 55 55 chr4 135106558 135106723 -67221624 + MIR SINE MIR 27 191 -71 3370 139 19 4 chr4 135106811 135107330 -67221017 + MER1A DNA MER1_type 1 527 0 23 0 0 0 chr4 135107424 135107447 -67220900 + AT_rich Low_complexity Low_complexity 1 23 0 1894 118 15 4 chr4 135107447 135107717 -67220630 - AluSq SINE Alu -19 294 22 223 333 23 35 chr4 135108807 135108894 -67219453 - MIR SINE MIR -56 152 67 21 0 0 0 chr4 135109304 135109325 -67219022 + AT_rich Low_complexity Low_complexity 1 21 0 256 344 0 0 chr4 135110504 135110568 -67217779 + MIR SINE MIR 13 76 -186 371 267 13 17 chr4 135110583 135110747 -67217600 + MIR SINE MIR 33 243 -19 410 292 10 64 chr4 135111079 135111281 -67217066 - MIR SINE MIR -49 213 23 470 295 0 0 chr4 135111611 135111733 -67216614 - MIR SINE MIR -63 199 78 230 193 18 0 chr4 135111775 135111832 -67216515 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 245 333 26 0 chr4 135111970 135112048 -67216299 + MIR3 SINE MIR 123 202 -6 17122 148 34 0 chr4 135114519 135118346 -67210001 + L1PA11 LINE L1 2275 6173 -1 1304 239 104 5 chr4 135118352 135119029 -67209318 + L1MD2 LINE L1 5383 6161 -5 810 281 77 12 chr4 135119797 135120043 -67208304 - MIR SINE MIR 0 262 1 184 400 0 0 chr4 135120090 135120155 -67208192 - L2 LINE L2 -12 3301 3237 2192 165 59 15 chr4 135120261 135120667 -67207680 - MSTB LTR MaLR -2 424 1 263 347 10 20 chr4 135120667 135120765 -67207582 + MIR3 SINE MIR 77 173 -35 233 246 0 16 chr4 135121064 135121125 -67207222 + GA-rich Low_complexity Low_complexity 1 60 0 252 0 0 0 chr4 135121729 135121757 -67206590 + (TG)n Simple_repeat Simple_repeat 2 29 0 204 356 17 43 chr4 135121851 135121966 -67206381 - MIR SINE MIR -85 177 66 195 42 0 0 chr4 135122121 135122145 -67206202 + (TC)n Simple_repeat Simple_repeat 2 25 0 23 54 0 0 chr4 135122327 135122364 -67205983 + AT_rich Low_complexity Low_complexity 1 37 0 1807 155 0 17 chr4 135123199 135123490 -67204857 - AluJb SINE Alu -26 286 1 299 137 0 20 chr4 135124521 135124572 -67203775 - MADE1 DNA Mariner 0 80 31 454 306 56 12 chr4 135124916 135125076 -67203271 - MIR SINE MIR -76 186 20 607 255 143 13 chr4 135125143 135125520 -67202827 + L1ME4a LINE L1 5681 6106 -15 225 152 0 81 chr4 135125679 135125778 -67202569 + (TTTA)n Simple_repeat Simple_repeat 3 93 0 315 0 0 0 chr4 135126488 135126523 -67201824 + (TG)n Simple_repeat Simple_repeat 2 36 0 215 263 84 21 chr4 135128967 135129062 -67199285 - MIR SINE MIR 0 262 162 285 346 39 8 chr4 135129477 135129604 -67198743 + MIR3 SINE MIR 69 199 -9 2707 205 56 2 chr4 135129912 135130415 -67197932 + L1PA12 LINE L1 641 1170 -6411 1630 164 25 18 chr4 135130517 135130798 -67197549 - THE1C LTR MaLR -92 283 1 9950 121 33 19 chr4 135130798 135132356 -67195991 - THE1C-int LTR MaLR 0 1580 1 2534 105 19 8 chr4 135132356 135132727 -67195620 - THE1C LTR MaLR 0 375 1 1078 257 17 0 chr4 135132730 135133080 -67195267 - L1M4 LINE L1 -1383 4763 4408 340 313 137 11 chr4 135133119 135133301 -67195046 + MLT1I LTR MaLR 1 205 -204 2020 147 3 0 chr4 135133487 135133780 -67194567 + AluSx SINE Alu 1 294 -18 193 379 11 28 chr4 135133784 135133966 -67194381 - L2 LINE L2 -535 2779 2601 30 0 0 0 chr4 135138328 135138358 -67189989 + AT_rich Low_complexity Low_complexity 1 30 0 456 307 125 50 chr4 135138913 135139056 -67189291 + HAL1 LINE L1 924 1055 -1452 2424 93 0 0 chr4 135139056 135139366 -67188981 - AluSp SINE Alu -3 310 1 456 307 125 50 chr4 135139366 135139646 -67188701 + HAL1 LINE L1 1055 1379 -1128 4655 59 2 0 chr4 135139719 135140309 -67188038 - L1PA7 LINE L1 -4 6150 5560 417 123 0 27 chr4 135140309 135140382 -67187965 + L1MC1 LINE L1 5781 5851 -482 12629 110 6 28 chr4 135140386 135142902 -67185445 + L1P3 LINE L1 9 2519 -3942 313 306 9 9 chr4 135142921 135143032 -67185315 + HAL1 LINE L1 1483 1593 -914 22 0 0 0 chr4 135143067 135143089 -67185258 + AT_rich Low_complexity Low_complexity 1 22 0 217 224 0 40 chr4 135143150 135143226 -67185121 + A-rich Low_complexity Low_complexity 4 76 0 975 296 38 20 chr4 135144899 135145243 -67183104 - MLT1I LTR MaLR -2 407 58 2128 106 3 0 chr4 135145634 135145953 -67182394 - AluSp SINE Alu 0 320 1 25 0 0 0 chr4 135145957 135145982 -67182365 + AT_rich Low_complexity Low_complexity 1 25 0 11696 196 29 15 chr4 135147196 135152569 -67175778 + L1PA13 LINE L1 1268 7597 -4 276 287 20 0 chr4 135153121 135153222 -67175125 + (TA)n Simple_repeat Simple_repeat 2 104 0 507 149 0 0 chr4 135153857 135153931 -67174416 + MSTA LTR MaLR 1 74 -354 * 1127 165 72 0 chr4 135153929 135154123 -67174224 + MSTA LTR MaLR 221 428 0 9304 167 18 13 chr4 135154123 135155766 -67172581 + MSTA-int LTR MaLR 1 1651 0 2156 150 114 5 chr4 135155766 135156152 -67172195 + MSTA LTR MaLR 1 428 0 1811 261 29 33 chr4 135156403 135156886 -67171461 + MLT1G1 LTR MaLR 1 481 -114 559 342 72 0 chr4 135157827 135158049 -67170298 - HERV16 LTR ERVL -2197 2799 2562 192 261 152 22 chr4 135158051 135158143 -67170204 + MIR SINE MIR 84 187 -75 272 282 174 41 chr4 135158916 135159111 -67169236 + MIR SINE MIR 42 262 0 557 277 0 34 chr4 135160636 135160784 -67167563 + MIR SINE MIR 14 156 -106 1120 201 18 18 chr4 135162558 135162777 -67165570 + MER20 DNA MER1_type 1 219 0 1605 174 17 14 chr4 135163110 135163398 -67164949 - AluJo SINE Alu -14 298 10 5614 90 7 3 chr4 135164299 135165057 -67163290 - MER11C LTR ERVK 0 1071 311 183 300 0 0 chr4 135165302 135165362 -67162985 + MIR SINE MIR 6 65 -197 334 204 23 114 chr4 135165479 135165611 -67162736 + AluSp SINE Alu 4 123 -180 14423 132 20 29 chr4 135167138 135169541 -67158806 + Tigger1 DNA MER2_type 38 2417 -1 198 118 0 0 chr4 135169566 135169600 -67158747 + (CATAT)n Simple_repeat Simple_repeat 2 35 0 697 278 167 18 chr4 135170026 135170361 -67157986 - L2 LINE L2 -1041 2273 1889 323 317 118 21 chr4 135170383 135170465 -67157882 + MIR SINE MIR 57 130 -132 186 43 0 0 chr4 135170465 135170488 -67157859 + (TAA)n Simple_repeat Simple_repeat 3 25 0 323 317 118 21 chr4 135170488 135170591 -67157756 + MIR SINE MIR 130 260 -2 205 182 0 0 chr4 135172483 135172527 -67155820 + A-rich Low_complexity Low_complexity 1 44 0 1804 213 94 54 chr4 135172622 135173149 -67155198 + MER77 LTR ERV1 54 673 -7 1976 190 0 5 chr4 135173394 135173762 -67154585 - MER47A DNA MER2_type 0 366 1 248 288 113 0 chr4 135175311 135175391 -67152956 + L2 LINE L2 2965 3053 -219 208 250 53 105 chr4 135175514 135175590 -67152757 + L2 LINE L2 3201 3272 0 215 391 0 0 chr4 135176151 135176215 -67152132 - MIR SINE MIR -59 149 86 1153 230 107 3 chr4 135176746 135177046 -67151301 - MER67D LTR ERV1 -4 510 180 1620 184 143 8 chr4 135177069 135177460 -67150887 - L1MA9 LINE L1 -38 6274 5831 808 174 0 0 chr4 135177460 135177604 -67150743 - L1MA9 LINE L1 -682 5501 5358 802 136 5 106 chr4 135177604 135177803 -67150544 - MER67D LTR ERV1 -330 184 6 307 274 98 10 chr4 135177811 135177913 -67150434 - MER5A DNA MER1_type -44 145 35 382 276 73 0 chr4 135177941 135178064 -67150283 + MER117 DNA MER1_type 32 163 -34 2523 312 32 35 chr4 135178359 135179344 -67149003 + ERVL LTR ERVL 2871 3853 -1911 12731 179 19 13 chr4 135179376 135180088 -67148259 + L1M1 LINE L1 2632 3338 -2967 2231 119 73 14 chr4 135180088 135180432 -67147915 + THE1B LTR MaLR 1 364 0 11712 88 11 2 chr4 135180432 135181997 -67146350 + THE1B-int LTR MaLR 1 1580 0 2029 154 73 14 chr4 135181997 135182341 -67146006 + THE1B LTR MaLR 1 364 0 12731 179 19 13 chr4 135182341 135184645 -67143702 + L1M1 LINE L1 3337 5669 -636 4362 122 10 5 chr4 135184636 135185307 -67143040 + L1MA2 LINE L1 5571 6245 -59 * 4540 126 19 4 chr4 135184645 135185359 -67142988 + L1MA2 LINE L1 5571 6304 0 337 306 32 24 chr4 135185411 135185535 -67142812 + ERVL LTR ERVL 4008 4132 -1632 1273 333 57 5 chr4 135185566 135186128 -67142219 + ERVL LTR ERVL 4214 4804 -850 1176 297 38 21 chr4 135186128 135186546 -67141801 + ERVL LTR ERVL 4956 5380 -384 219 125 0 0 chr4 135186753 135186793 -67141554 + (GA)n Simple_repeat Simple_repeat 1 40 0 1145 273 158 11 chr4 135186941 135187487 -67140860 + LTR50 LTR ERVL 44 669 -126 209 91 45 23 chr4 135187585 135187629 -67140718 + (TA)n Simple_repeat Simple_repeat 1 45 0 476 300 20 20 chr4 135187785 135187935 -67140412 + L2 LINE L2 2430 2579 -735 341 176 27 14 chr4 135187945 135188019 -67140328 - MER5B DNA MER1_type 0 178 104 557 133 0 0 chr4 135188074 135188157 -67140190 - FRAM SINE Alu -26 150 68 669 281 166 23 chr4 135188251 135188362 -67139985 + L2 LINE L2 2587 2681 -591 180 0 0 0 chr4 135188362 135188382 -67139965 + (TA)n Simple_repeat Simple_repeat 2 21 0 669 281 166 23 chr4 135188382 135188850 -67139497 + L2 LINE L2 2681 3262 -10 272 360 40 20 chr4 135189305 135189455 -67138892 + MIR3 SINE MIR 53 205 -3 1550 198 114 25 chr4 135189645 135190040 -67138307 - MER63B DNA MER1_type 0 436 7 813 211 26 0 chr4 135190406 135190558 -67137789 - MER58A DNA MER1_type -16 208 53 959 221 0 0 chr4 135190558 135190730 -67137617 + FAM SINE Alu 1 172 -3 389 203 0 14 chr4 135190745 135190814 -67137533 - MER58A DNA MER1_type -39 68 1 1197 219 22 70 chr4 135190870 135191270 -67137077 - MLT1A2 LTR MaLR 0 390 1 25 0 0 0 chr4 135191758 135191783 -67136564 + AT_rich Low_complexity Low_complexity 1 25 0 927 306 57 45 chr4 135192980 135193451 -67134896 + L1M2 LINE L1 2 478 -6371 411 359 134 31 chr4 135193478 135193768 -67134579 + L1M2 LINE L1 614 933 -5916 7938 205 16 28 chr4 135193997 135197071 -67131276 + L1P5 LINE L1 2871 5776 -380 * 14126 36 5 0 chr4 135197067 135198797 -67129550 + L1P LINE L1 2653 4390 -1756 1624 219 74 32 chr4 135202669 135203140 -67125207 + MER34B LTR ERV1 11 501 -64 684 223 71 0 chr4 135203469 135203680 -67124667 + MER33 DNA MER1_type 5 230 -94 11071 108 4 2 chr4 135203680 135206103 -67122244 - L1PA8 LINE L1 -5 6167 3742 347 244 26 0 chr4 135206961 135207039 -67121308 - LTR16C LTR ERVL 0 491 412 353 301 18 0 chr4 135207976 135208089 -67120258 - MIR SINE MIR -42 220 106 200 250 0 47 chr4 135208115 135208179 -67120168 + L2 LINE L2 3252 3312 -1 22 0 0 0 chr4 135208630 135208652 -67119695 + AT_rich Low_complexity Low_complexity 1 22 0 2324 107 0 0 chr4 135210074 135210374 -67117973 + AluSc SINE Alu 5 304 -5 189 175 0 0 chr4 135210434 135210474 -67117873 + (TTG)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr4 135212109 135212130 -67116217 + AT_rich Low_complexity Low_complexity 1 21 0 601 289 104 63 chr4 135213349 135213899 -67114448 + MLT1G LTR MaLR 38 590 0 21 0 0 0 chr4 135214035 135214056 -67114291 + AT_rich Low_complexity Low_complexity 1 21 0 2206 141 12 0 chr4 135214789 135215122 -67113225 + MER1B DNA MER1_type 1 337 0 1515 208 134 27 chr4 135215968 135216372 -67111975 + L1ME1 LINE L1 5512 5958 -208 2556 138 28 33 chr4 135216530 135216958 -67111389 + MSTB LTR MaLR 1 426 0 1444 129 3 153 chr4 135216960 135217300 -67111047 - L1MA4A LINE L1 -401 5902 5614 526 176 19 0 chr4 135217324 135217432 -67110915 - L1MA4A LINE L1 -819 5327 5218 * 622 219 0 61 chr4 135217431 135217519 -67110828 + L1MA10 LINE L1 6178 6253 -81 2061 141 0 7 chr4 135217519 135217823 -67110524 + AluSx SINE Alu 2 303 -9 622 219 0 61 chr4 135217823 135217898 -67110449 + L1MA10 LINE L1 6253 6331 -3 14372 119 10 8 chr4 135217898 135220898 -67107449 - L1PA8A LINE L1 -12 6434 3437 467 160 0 0 chr4 135220930 135221024 -67107323 - L1PA8A LINE L1 -2990 3471 3378 4760 126 26 31 chr4 135221027 135221830 -67106517 - L1PA8A LINE L1 -5075 800 2 376 337 169 0 chr4 135222132 135222304 -67106043 + MIR SINE MIR 36 236 -26 11538 22 16 3 chr4 135222546 135224226 -67104121 - L1PA4 LINE L1 -472 5683 3978 3974 30 2 0 chr4 135224226 135224698 -67103649 + L1PA4 LINE L1 5679 6152 -3 23 0 0 0 chr4 135225046 135225069 -67103278 + AT_rich Low_complexity Low_complexity 1 23 0 401 263 270 0 chr4 135225791 135225943 -67102404 - MIR SINE MIR -2 260 68 299 289 114 26 chr4 135227014 135227128 -67101219 + MIR3 SINE MIR 79 202 -6 266 300 42 0 chr4 135227442 135227562 -67100785 - MER117 DNA MER1_type -43 154 30 2100 120 3 0 chr4 135227731 135228066 -67100281 + AluSx SINE Alu 1 336 0 777 241 198 0 chr4 135228313 135228525 -67099822 - MLT1G LTR MaLR -334 256 3 255 340 80 20 chr4 135228593 135228743 -67099604 + L2 LINE L2 2932 3090 -182 420 254 70 42 chr4 135228766 135228908 -67099439 - MER5A DNA MER1_type -40 149 4 359 287 67 27 chr4 135229449 135229599 -67098748 + MIR SINE MIR 50 205 -57 295 61 73 24 chr4 135229604 135229686 -67098661 + (TA)n Simple_repeat Simple_repeat 1 86 0 184 225 0 0 chr4 135229691 135229731 -67098616 + MIR SINE MIR 222 261 -1 546 337 6 6 chr4 135229735 135229901 -67098446 + MIR SINE MIR 8 173 -89 284 298 12 24 chr4 135229951 135230035 -67098312 + L2 LINE L2 3231 3313 0 484 231 45 22 chr4 135233073 135233207 -67095140 - MIR SINE MIR -4 258 122 191 163 0 23 chr4 135234122 135234165 -67094182 + GA-rich Low_complexity Low_complexity 3 44 0 196 128 21 21 chr4 135234173 135234220 -67094127 + A-rich Low_complexity Low_complexity 1 47 0 2233 118 0 6 chr4 135234638 135234951 -67093396 + AluSq SINE Alu 3 313 0 481 288 0 0 chr4 135235214 135235353 -67092994 - L1PB4 LINE L1 -2 6154 6016 21 71 0 0 chr4 135235493 135235535 -67092812 + AT_rich Low_complexity Low_complexity 1 42 0 587 104 42 0 chr4 135237946 135238042 -67090305 + L1MA6 LINE L1 6201 6300 0 27 0 0 0 chr4 135238317 135238344 -67090003 + AT_rich Low_complexity Low_complexity 1 27 0 1798 163 13 7 chr4 135239078 135239379 -67088968 - AluJb SINE Alu -9 303 1 5239 161 26 29 chr4 135240336 135241630 -67086717 + L1MA4 LINE L1 4500 5784 -516 378 0 0 0 chr4 135241630 135241672 -67086675 + (TA)n Simple_repeat Simple_repeat 1 42 0 5239 161 26 29 chr4 135241672 135242175 -67086172 + L1MA4 LINE L1 5784 6287 -13 199 231 19 39 chr4 135242514 135242566 -67085781 + L2 LINE L2 3217 3267 -5 655 232 242 5 chr4 135243018 135243212 -67085135 - MIR SINE MIR -19 243 4 626 176 40 38 chr4 135243820 135244034 -67084313 + LTR45 LTR ERV1 304 525 0 2131 107 20 0 chr4 135245138 135245436 -67082911 + AluSq SINE Alu 1 304 -9 478 308 14 20 chr4 135245485 135245631 -67082716 - L2 LINE L2 0 3313 3169 707 319 56 100 chr4 135245646 135246615 -67081732 - L2 LINE L2 -260 3012 2100 337 146 0 2 chr4 135246615 135246670 -67081677 - L1MA3 LINE L1 -167 6138 6078 604 144 10 0 chr4 135246670 135246761 -67081586 + L1MA2 LINE L1 6200 6304 0 22 0 0 0 chr4 135246811 135246833 -67081514 + AT_rich Low_complexity Low_complexity 1 22 0 230 361 82 0 chr4 135246944 135247041 -67081306 - L2 LINE L2 -10 3262 3158 274 209 50 14 chr4 135248407 135248546 -67079801 + (TA)n Simple_repeat Simple_repeat 2 145 0 354 220 0 0 chr4 135248553 135248653 -67079694 + (TATG)n Simple_repeat Simple_repeat 1 100 0 259 376 56 0 chr4 135248895 135249020 -67079327 - MIR SINE MIR -111 151 20 285 339 130 0 chr4 135249129 135249244 -67079103 + L2 LINE L2 3183 3312 -1 1943 122 28 3 chr4 135249283 135249571 -67078776 - AluSc SINE Alu -14 295 1 6798 61 46 0 chr4 135250460 135251458 -67076889 - L1PA7 LINE L1 -4 6150 5132 21 0 0 0 chr4 135251571 135251592 -67076755 + AT_rich Low_complexity Low_complexity 1 21 0 1557 198 9 28 chr4 135252602 135252920 -67075427 + AluJb SINE Alu 1 312 0 258 32 0 0 chr4 135254619 135254650 -67073697 + (GA)n Simple_repeat Simple_repeat 2 32 0 1962 232 91 46 chr4 135254675 135255040 -67073307 + L2 LINE L2 2181 2528 -786 826 217 48 6 chr4 135255040 135255206 -67073141 - FAM SINE Alu -2 173 1 1962 232 91 46 chr4 135255206 135255520 -67072827 + L2 LINE L2 2528 2891 -423 476 273 15 73 chr4 135255521 135255726 -67072621 + L2 LINE L2 3105 3297 -16 4949 145 55 7 chr4 135255879 135256776 -67071571 + L1MA5A LINE L1 5354 6293 -4 21 57 0 0 chr4 135256776 135256811 -67071536 + AT_rich Low_complexity Low_complexity 1 35 0 910 28 0 0 chr4 135256976 135257085 -67071262 - L1PA3 LINE L1 0 6155 6047 31 44 0 0 chr4 135257167 135257212 -67071135 + AT_rich Low_complexity Low_complexity 1 45 0 23278 46 2 0 chr4 135258891 135261798 -67066549 - L1P LINE L1 -1234 4912 2001 5459 42 6 0 chr4 135261799 135262465 -67065882 + L1PA5 LINE L1 5485 6154 0 2343 100 0 0 chr4 135262478 135262778 -67065569 + AluY SINE Alu 1 300 -11 1876 226 60 20 chr4 135262794 135263869 -67064478 + L1ME1 LINE L1 4799 5925 -241 24 0 0 0 chr4 135263869 135263893 -67064454 + AT_rich Low_complexity Low_complexity 1 24 0 221 139 48 30 chr4 135263909 135264074 -67064273 + (TA)n Simple_repeat Simple_repeat 1 168 0 230 224 26 26 chr4 135264083 135264159 -67064188 + (TATG)n Simple_repeat Simple_repeat 4 79 0 215 119 60 0 chr4 135264292 135264359 -67063988 + (TA)n Simple_repeat Simple_repeat 2 72 0 463 144 16 213 chr4 135264406 135264594 -67063753 + L1MB1 LINE L1 4515 4665 -1481 2999 191 71 38 chr4 135264594 135265450 -67062897 + L1MB1 LINE L1 4623 5482 -686 3557 169 30 20 chr4 135265480 135266180 -67062167 + L1MB1 LINE L1 5461 6167 -1 655 261 63 19 chr4 135266227 135266447 -67061900 + L1ME1 LINE L1 5947 6332 -2 305 321 88 26 chr4 135266447 135266640 -67061707 + L1ME LINE L1 4174 4378 -1768 754 94 27 101 chr4 135266668 135266817 -67061530 + L1PA12 LINE L1 5712 5849 -319 1523 247 65 54 chr4 135266828 135267362 -67060985 - MLT1F LTR MaLR 0 542 3 906 277 55 31 chr4 135267362 135267975 -67060372 + L1ME LINE L1 5177 5804 -360 2935 133 38 12 chr4 135268002 135268500 -67059847 - MER9 LTR ERVK 0 511 1 29958 93 10 6 chr4 135268500 135272870 -67055477 - HERVK9 LTR ERVK 0 8032 1626 4655 101 7 19 chr4 135272866 135273541 -67054806 - HERVK9 LTR ERVK -5249 667 1 * 3052 117 40 8 chr4 135273541 135274036 -67054311 - MER9 LTR ERVK 0 511 1 516 244 7 30 chr4 135274547 135274682 -67053665 - MLT1H LTR MaLR -323 226 95 23 0 0 0 chr4 135274977 135275000 -67053347 + AT_rich Low_complexity Low_complexity 1 23 0 1696 216 171 2 chr4 135275849 135276255 -67052092 + MLT2B1 LTR ERVL 1 490 -30 318 26 0 0 chr4 135276255 135276294 -67052053 + (TG)n Simple_repeat Simple_repeat 2 40 0 1696 216 171 2 chr4 135276294 135276332 -67052015 + MLT2B1 LTR ERVL 490 520 0 342 285 48 111 chr4 135276480 135276687 -67051660 - MIR3 SINE MIR -5 203 10 248 59 0 0 chr4 135277327 135277361 -67050986 + HSMAR1 DNA Mariner 1 34 -1253 216 163 0 0 chr4 135277533 135277576 -67050771 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 57 0 0 chr4 135277641 135277676 -67050671 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr4 135280077 135280107 -67048240 + AT_rich Low_complexity Low_complexity 1 30 0 1699 127 0 4 chr4 135280636 135280873 -67047474 - AluSx SINE Alu -71 241 6 236 360 24 43 chr4 135281937 135282101 -67046246 - MIR3 SINE MIR -1 207 47 260 196 76 33 chr4 135282504 135282596 -67045751 + L1ME4a LINE L1 5634 5729 -392 327 130 0 0 chr4 135282603 135282657 -67045690 + (GGA)n Simple_repeat Simple_repeat 2 55 0 537 298 111 8 chr4 135282659 135283002 -67045345 + L1ME4a LINE L1 5733 6114 -7 1238 21 0 0 chr4 135283002 135283147 -67045200 + L1PA2 LINE L1 6011 6155 0 2094 166 40 31 chr4 135283728 135284149 -67044198 + MSTB LTR MaLR 2 426 0 402 39 0 0 chr4 135284730 135284782 -67043565 + (CA)n Simple_repeat Simple_repeat 1 52 0 354 23 0 0 chr4 135285222 135285265 -67043082 + (CA)n Simple_repeat Simple_repeat 1 43 0 24 0 0 0 chr4 135285530 135285554 -67042793 + AT_rich Low_complexity Low_complexity 1 24 0 918 175 26 0 chr4 135285680 135285834 -67042513 - FRAM SINE Alu -8 158 1 260 246 122 1 chr4 135286065 135286144 -67042203 - MER5B DNA MER1_type -98 80 1 28 48 0 0 chr4 135286566 135286608 -67041739 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr4 135286676 135286711 -67041636 + AT_rich Low_complexity Low_complexity 1 35 0 292 56 0 0 chr4 135287101 135287137 -67041210 - MADE1 DNA Mariner 0 80 45 437 244 26 45 chr4 135287697 135287853 -67040494 - L1 LINE L1 -2481 3665 3513 814 267 23 42 chr4 135287916 135288178 -67040169 + L1MEc LINE L1 15 271 -6125 2323 159 3 3 chr4 135288178 135288531 -67039816 - THE1B LTR MaLR -2 362 10 699 309 5 14 chr4 135288560 135288783 -67039564 + L1MEc LINE L1 282 502 -5894 1634 178 16 66 chr4 135288787 135289164 -67039183 + MLT1A1 LTR MaLR 1 358 -7 2088 241 76 43 chr4 135289169 135289723 -67038624 + L1MEc LINE L1 506 1097 -5299 2954 57 0 0 chr4 135289723 135290095 -67038252 - L1PA8 LINE L1 0 6172 5801 2088 241 76 43 chr4 135290095 135290352 -67037995 + L1MEc LINE L1 1097 1344 -5052 6004 162 57 6 chr4 135290443 135291549 -67036798 + L1PB1 LINE L1 1 1162 -5701 247 116 0 0 chr4 135291550 135291593 -67036754 + L1PB1 LINE L1 1313 1355 -5508 2514 130 3 11 chr4 135291594 135291972 -67036375 - THE1C LTR MaLR 0 375 1 8610 118 31 46 chr4 135291993 135293372 -67034975 - THE1C-int LTR MaLR -221 1359 1 2510 111 16 5 chr4 135293372 135293741 -67034606 - THE1C LTR MaLR 0 375 3 14025 179 58 17 chr4 135293743 135295403 -67032944 + L1PB1 LINE L1 1352 2943 -3924 297 0 0 0 chr4 135295403 135295436 -67032911 + (CA)n Simple_repeat Simple_repeat 1 33 0 14025 179 58 17 chr4 135295436 135299098 -67029249 + L1PB1 LINE L1 2943 6865 -2 26 50 0 0 chr4 135299098 135299138 -67029209 + AT_rich Low_complexity Low_complexity 1 40 0 1676 158 62 10 chr4 135299759 135300051 -67028296 - MER7A DNA MER2_type -40 306 2 2273 158 65 0 chr4 135300295 135300695 -67027652 - MSTB LTR MaLR 0 426 1 456 332 37 0 chr4 135302436 135302594 -67025753 - MIR SINE MIR -51 157 35 258 386 0 0 chr4 135302777 135302865 -67025482 + L2 LINE L2 3136 3223 -49 1249 209 6 87 chr4 135302903 135303224 -67025123 + AluJo SINE Alu 3 297 -15 30 0 0 0 chr4 135304611 135304641 -67023706 + AT_rich Low_complexity Low_complexity 1 30 0 183 223 126 78 chr4 135305158 135305261 -67023086 + L2 LINE L2 1960 2067 -1247 241 355 43 7 chr4 135305602 135305740 -67022607 + MIR SINE MIR 53 195 -67 515 341 139 41 chr4 135306652 135307112 -67021235 + L2 LINE L2 2227 2731 -583 506 280 89 89 chr4 135307146 135308387 -67019960 + L1MB1 LINE L1 2956 4195 -1951 338 300 35 47 chr4 135308509 135308679 -67019668 + L1MB1 LINE L1 4431 4598 -1548 218 225 0 0 chr4 135308679 135308719 -67019628 + (TG)n Simple_repeat Simple_repeat 1 40 0 5875 59 7 8 chr4 135308726 135309489 -67018858 - L1PA7 LINE L1 0 6154 5393 1740 117 7 0 chr4 135309482 135309755 -67018592 + L1P LINE L1 4652 4926 -1220 * 2377 251 65 64 chr4 135309770 135310741 -67017606 + L1 LINE L1 777 1774 -4608 2745 110 17 0 chr4 135310741 135311150 -67017197 + L1PA14 LINE L1 5744 6159 -2 2377 251 65 64 chr4 135311150 135311620 -67016727 + L1 LINE L1 1774 2242 -4140 * 5351 201 31 11 chr4 135311618 135312852 -67015495 + L1 LINE L1 4200 5457 -925 4789 162 13 6 chr4 135312851 135313828 -67014519 + L1MB1 LINE L1 5109 6095 -73 * 321 145 171 0 chr4 135313846 135313922 -67014425 + L1MB1 LINE L1 6079 6167 -1 22 35 0 0 chr4 135313938 135313967 -67014380 + AT_rich Low_complexity Low_complexity 1 29 0 308 292 113 10 chr4 135314011 135314206 -67014141 + L1MC5 LINE L1 5255 5469 -2339 803 272 0 6 chr4 135314217 135314390 -67013957 + MER8 DNA MER2_type 1 172 -67 416 179 0 13 chr4 135314418 135314496 -67013851 - Tigger2 DNA MER2_type -2640 78 2 2804 250 95 59 chr4 135314498 135315065 -67013282 + L1MC5 LINE L1 5486 6031 -1930 2619 43 0 0 chr4 135315065 135315369 -67012978 - AluY SINE Alu -7 304 1 2804 250 95 59 chr4 135315369 135315867 -67012480 + L1MC5 LINE L1 6031 6510 -1451 2569 143 22 32 chr4 135315867 135316364 -67011983 - LTR22B LTR ERVK 0 492 1 2804 250 95 59 chr4 135316364 135317027 -67011320 + L1MC5 LINE L1 6510 7148 -813 1684 161 30 30 chr4 135317027 135317363 -67010984 - MER44D DNA MER2_type 0 609 4 2804 250 95 59 chr4 135317363 135317872 -67010475 + L1MC5 LINE L1 7148 7849 -112 342 0 0 0 chr4 135317872 135317910 -67010437 + (CA)n Simple_repeat Simple_repeat 2 39 0 2804 250 95 59 chr4 135317910 135317965 -67010382 + L1MC5 LINE L1 7849 7901 -60 2186 195 22 7 chr4 135320508 135320914 -67007433 + MSTB LTR MaLR 15 426 0 8283 193 25 8 chr4 135320914 135322538 -67005809 + MSTB-int LTR MaLR 1 1651 0 2044 164 78 15 chr4 135322540 135322937 -67005410 + MSTB LTR MaLR 3 424 -2 27 0 0 0 chr4 135323174 135323201 -67005146 + AT_rich Low_complexity Low_complexity 1 27 0 214 319 29 0 chr4 135323431 135323500 -67004847 + L2 LINE L2 3243 3313 0 194 211 254 0 chr4 135323679 135323750 -67004597 + MIR SINE MIR 164 252 -10 244 208 13 52 chr4 135323764 135323841 -67004506 - SATR1 Satellite Satellite -283 187 114 236 284 15 0 chr4 135324003 135324070 -67004277 + GA-rich Low_complexity Low_complexity 4 71 0 1504 174 28 108 chr4 135325896 135326320 -67002027 + MLT1B LTR MaLR 1 390 0 335 346 52 13 chr4 135326981 135327134 -67001213 - MIR3 SINE MIR -40 168 10 238 256 37 73 chr4 135327273 135327355 -67000992 - MER20B DNA MER1_type -646 137 59 232 261 159 0 chr4 135327649 135327718 -67000629 + MLT1I LTR MaLR 98 177 -232 444 249 38 29 chr4 135327740 135328081 -67000266 + MLT1H LTR MaLR 237 590 -3 1028 184 89 120 chr4 135328391 135328749 -66999598 - MLT1A1 LTR MaLR -8 357 11 908 226 38 104 chr4 135329566 135329911 -66998436 + MLT1G1 LTR MaLR 1 322 -273 279 0 0 0 chr4 135331744 135331775 -66996572 + (CA)n Simple_repeat Simple_repeat 2 32 0 24 0 0 0 chr4 135332337 135332361 -66995986 + AT_rich Low_complexity Low_complexity 1 24 0 459 102 28 148 chr4 135334448 135334556 -66993791 + AluJo SINE Alu 40 134 -178 26 0 0 0 chr4 135334846 135334872 -66993475 + AT_rich Low_complexity Low_complexity 1 26 0 259 239 0 0 chr4 135334949 135335020 -66993327 + (TA)n Simple_repeat Simple_repeat 2 72 0 614 361 121 5 chr4 135335083 135335479 -66992868 + LTR16A LTR ERVL 1 442 -8 478 222 10 7 chr4 135336862 135336976 -66991371 - MLT1F1-int LTR MaLR -1273 98 1 1924 185 122 50 chr4 135336990 135337486 -66990861 - MLT1F1 LTR MaLR -11 643 5 1832 245 58 35 chr4 135337650 135338270 -66990077 + L1ME1 LINE L1 5426 6059 -107 * 5139 173 15 19 chr4 135338269 135339911 -66988436 + L1PB1 LINE L1 4167 5802 -349 361 267 0 15 chr4 135339911 135340046 -66988301 + (CATATA)n Simple_repeat Simple_repeat 6 138 0 2054 108 10 10 chr4 135340092 135340398 -66987949 + L1PB1 LINE L1 5841 6146 -5 2011 87 90 0 chr4 135340398 135340664 -66987683 - AluSc SINE Alu -19 290 1 378 242 25 42 chr4 135340686 135340806 -66987541 + L1ME1 LINE L1 6049 6166 0 2133 232 51 4 chr4 135342202 135342736 -66985611 - L1ME1 LINE L1 -5 6161 5603 574 182 27 9 chr4 135343046 135343156 -66985191 - AluJo SINE Alu -105 207 96 33 0 0 0 chr4 135343596 135343629 -66984718 + AT_rich Low_complexity Low_complexity 1 33 0 1282 169 0 9 chr4 135344154 135344373 -66983974 - AluJo SINE Alu 0 312 96 329 268 58 14 chr4 135344556 135344694 -66983653 + L1ME4a LINE L1 4217 4360 -1786 361 275 68 111 chr4 135344719 135345134 -66983213 - MLT1J LTR MaLR -7 504 108 496 244 63 9 chr4 135345175 135345396 -66982951 + L1ME4a LINE L1 4397 4629 -1517 345 175 93 21 chr4 135345519 135345616 -66982731 + MLT1I LTR MaLR 306 409 0 4114 128 27 12 chr4 135345868 135347119 -66981228 + L1PA14 LINE L1 4586 5855 -306 2092 94 17 0 chr4 135347259 135347557 -66980790 + L1PA14 LINE L1 5859 6161 0 500 291 121 14 chr4 135348505 135348869 -66979478 + L1ME4a LINE L1 5550 5952 -169 214 233 211 22 chr4 135350972 135351062 -66977285 + L2 LINE L2 3166 3272 0 725 303 20 20 chr4 135351340 135351591 -66976756 - MIR SINE MIR -1 261 11 605 249 135 22 chr4 135352846 135353031 -66975316 - L2 LINE L2 -1 3312 3107 521 262 150 34 chr4 135353249 135353482 -66974865 - MLT1K LTR MaLR -10 578 319 2195 214 79 31 chr4 135354025 135354768 -66973579 - MER69 DNA AcHobo -8 2518 1740 961 237 46 16 chr4 135354878 135355182 -66973165 - MER69 DNA AcHobo -748 1778 1466 577 233 99 101 chr4 135356505 135356921 -66971426 - MER69 DNA AcHobo -1123 1403 989 255 155 69 35 chr4 135357231 135357289 -66971058 - FLAM SINE Alu -1 132 73 382 159 12 229 chr4 135357302 135357472 -66970875 - FLAM_A SINE Alu 0 133 1 234 125 0 62 chr4 135357775 135357823 -66970524 - Alu SINE Alu -2 300 256 334 188 0 0 chr4 135357872 135357941 -66970406 - L1MA10 LINE L1 -7 6327 6259 1303 139 0 0 chr4 135357943 135358130 -66970217 - AluSg/x SINE Alu -9 301 115 883 164 43 77 chr4 135358168 135358293 -66970054 - L1PA16 LINE L1 -9 6157 6040 2446 94 3 0 chr4 135358293 135358602 -66969745 - AluSq SINE Alu -3 310 1 883 164 43 77 chr4 135358602 135358683 -66969664 - L1PA16 LINE L1 -126 6040 5958 1605 217 0 7 chr4 135359498 135359807 -66968540 + AluJo SINE Alu 1 307 -5 2271 102 0 0 chr4 135360353 135360657 -66967690 - AluSg SINE Alu -6 304 1 2749 191 21 39 chr4 135361216 135361839 -66966508 + LTR9 LTR ERV1 1 612 0 273 331 139 53 chr4 135362113 135362488 -66965859 + L3 LINE CR1 1092 1498 -79 1224 166 102 5 chr4 135363286 135363696 -66964651 - MER21A LTR ERV1 -377 486 1 7921 161 50 12 chr4 135363696 135364765 -66963582 - MER21A-int LTR ERV1 0 4191 3053 198 71 0 0 chr4 135364765 135364793 -66963554 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7921 161 50 12 chr4 135364793 135365149 -66963198 - MER21A-int LTR ERV1 -1138 3053 2712 21 36 0 0 chr4 135365506 135365534 -66962813 + AT_rich Low_complexity Low_complexity 1 28 0 2485 68 0 37 chr4 135366063 135366385 -66961962 - AluY SINE Alu -1 310 1 824 305 106 39 chr4 135366420 135366862 -66961485 + L3 LINE CR1 1104 1575 -2 938 245 157 46 chr4 135367390 135367868 -66960479 + MLT1G1 LTR MaLR 23 553 -2 339 85 0 0 chr4 135368266 135368313 -66960034 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 506 335 85 68 chr4 135368954 135369294 -66959053 + L2 LINE L2 2927 3272 0 2699 98 3 8 chr4 135369634 135370011 -66958336 + THE1C LTR MaLR 1 375 0 1854 135 187 8 chr4 135370667 135371030 -66957317 - MSTA LTR MaLR 0 428 1 562 356 115 43 chr4 135371301 135371990 -66956357 - L2 LINE L2 -352 2962 2225 2214 166 43 23 chr4 135372292 135373077 -66955270 + L1MB8 LINE L1 4853 5665 -519 1738 104 12 0 chr4 135373079 135373329 -66955018 + L1PA11 LINE L1 5912 6164 -10 2539 172 6 18 chr4 135373346 135373857 -66954490 + L1MB8 LINE L1 5674 6178 0 219 341 70 23 chr4 135374811 135374940 -66953407 - L2 LINE L2 -1414 1900 1766 4651 126 26 8 chr4 135375061 135375371 -66952976 - L1MC1 LINE L1 -12 6321 6018 2101 205 20 15 chr4 135375371 135375800 -66952547 - LOR1b LTR ERV1 0 461 28 2200 121 0 0 chr4 135375800 135376097 -66952250 + AluSq SINE Alu 3 299 -14 2101 205 20 15 chr4 135376097 135376126 -66952221 - LOR1b LTR ERV1 -433 28 1 4651 126 26 8 chr4 135376126 135376575 -66951772 - L1MC1 LINE L1 -315 6018 5548 6177 117 88 100 chr4 135376577 135378451 -66949896 + pTR5 LTR ERV1 741 2438 0 1948 164 46 15 chr4 135378457 135379100 -66949247 - L1MC1 LINE L1 -751 5395 4886 22 0 0 0 chr4 135380523 135380545 -66947802 + AT_rich Low_complexity Low_complexity 1 22 0 205 161 0 0 chr4 135381215 135381246 -66947101 + polypurine Low_complexity Low_complexity 2 32 0 4866 150 64 32 chr4 135381519 135382257 -66946090 + L1MA4A LINE L1 5073 5868 -435 2379 85 7 3 chr4 135382257 135382564 -66945783 + AluY SINE Alu 1 308 -3 4866 150 64 32 chr4 135382564 135383011 -66945336 + L1MA4A LINE L1 5868 6299 -4 837 209 22 31 chr4 135384483 135384708 -66943639 - L1ME2 LINE L1 -127 6037 5815 181 163 41 0 chr4 135384790 135384839 -66943508 + GA-rich Low_complexity Low_complexity 4 54 0 282 397 133 8 chr4 135384945 135385179 -66943168 - L2 LINE L2 -1346 1968 1706 348 333 120 19 chr4 135385296 135385512 -66942835 - MIR SINE MIR -4 258 21 1966 120 19 0 chr4 135386283 135386550 -66941797 + AluSx SINE Alu 14 285 -27 29 28 0 0 chr4 135386750 135386786 -66941561 + AT_rich Low_complexity Low_complexity 1 36 0 2077 251 7 22 chr4 135388627 135389177 -66939170 + MLT1F LTR MaLR 1 542 0 215 346 13 0 chr4 135389890 135389968 -66938379 + L2 LINE L2 3181 3259 -13 2519 70 0 0 chr4 135391900 135392202 -66936145 + AluY SINE Alu 1 302 -9 2259 107 0 3 chr4 135392213 135392512 -66935835 + AluSq SINE Alu 3 300 -13 572 292 120 59 chr4 135393114 135393364 -66934983 - MLT1H LTR MaLR 0 549 261 1293 121 79 9 chr4 135393364 135393579 -66934768 + MER30 DNA MER1_type 1 230 0 572 292 120 59 chr4 135393579 135393753 -66934594 - MLT1H LTR MaLR -288 261 99 1823 87 23 0 chr4 135393761 135394026 -66934321 + L1MA1 LINE L1 6026 6296 -6 375 78 0 0 chr4 135397503 135397554 -66930793 + (TG)n Simple_repeat Simple_repeat 2 52 0 311 319 0 0 chr4 135398311 135398405 -66929942 - MIR3 SINE MIR -29 179 86 2342 189 63 26 chr4 135398405 135398836 -66929511 + MLT2B1 LTR ERVL 1 415 -105 1488 168 117 29 chr4 135398836 135399152 -66929195 - MER2 DNA MER2_type 0 344 1 468 0 0 0 chr4 135399162 135399214 -66929133 + (TGGA)n Simple_repeat Simple_repeat 1 52 0 2342 189 63 26 chr4 135399214 135399263 -66929084 + MLT2B1 LTR ERVL 423 510 -10 326 275 141 47 chr4 135399945 135400094 -66928253 - MIR SINE MIR -8 254 92 255 281 31 42 chr4 135400718 135400814 -66927533 - L2 LINE L2 -20 3293 3199 598 288 77 36 chr4 135401001 135401418 -66926929 - LTR33 LTR ERVL -50 471 38 945 222 43 35 chr4 135401490 135401720 -66926627 - MIR SINE MIR -21 241 10 2852 179 24 14 chr4 135402954 135403540 -66924807 + L1MC3 LINE L1 7173 7764 -21 4414 158 23 43 chr4 135403963 135404967 -66923380 + MER11C LTR ERVK 1 1071 0 182 375 90 35 chr4 135405046 135405190 -66923157 + L2 LINE L2 3090 3241 -31 984 316 63 15 chr4 135405714 135406125 -66922222 - MLT1K LTR MaLR -89 499 69 2746 160 54 12 chr4 135407815 135408270 -66920077 + MLT2B1 LTR ERVL 1 480 -40 288 53 0 0 chr4 135408270 135408308 -66920039 + (CAGA)n Simple_repeat Simple_repeat 3 40 0 2746 160 54 12 chr4 135408308 135408351 -66919996 + MLT2B1 LTR ERVL 480 520 0 276 185 0 0 chr4 135408959 135409013 -66919334 + GA-rich Low_complexity Low_complexity 4 57 0 317 313 10 0 chr4 135409345 135409441 -66918906 + GA-rich Low_complexity Low_complexity 4 100 0 405 234 11 0 chr4 135410755 135410849 -66917498 - MIR SINE MIR 0 262 168 304 208 0 0 chr4 135411030 135411083 -66917264 + MIR SINE MIR 125 177 -85 315 294 283 0 chr4 135411412 135411599 -66916748 - MIR SINE MIR -5 257 18 1753 168 157 11 chr4 135412496 135412859 -66915488 + MER47B DNA MER2_type 2 417 -1 255 268 22 36 chr4 135413609 135413747 -66914600 + (CATATA)n Simple_repeat Simple_repeat 2 137 0 * 457 240 23 0 chr4 135413651 135413826 -66914521 + (TA)n Simple_repeat Simple_repeat 2 180 0 35 88 0 0 chr4 135413841 135413932 -66914415 + AT_rich Low_complexity Low_complexity 1 91 0 222 171 0 0 chr4 135413976 135414017 -66914330 + (TA)n Simple_repeat Simple_repeat 1 41 0 227 73 0 0 chr4 135414017 135414058 -66914289 + LTR66 LTR ERVL 399 439 -171 327 104 0 0 chr4 135414060 135414108 -66914239 + (TA)n Simple_repeat Simple_repeat 2 49 0 32 26 0 0 chr4 135415986 135416025 -66912322 + AT_rich Low_complexity Low_complexity 1 39 0 274 287 29 15 chr4 135416528 135416664 -66911683 + L1ME LINE L1 5669 5806 -315 396 40 0 0 chr4 135416853 135416903 -66911444 + (CA)n Simple_repeat Simple_repeat 2 51 0 268 255 153 20 chr4 135417171 135417269 -66911078 - L2 LINE L2 -1 3312 3202 501 262 15 117 chr4 135418926 135419380 -66908967 + L1MC4 LINE L1 7635 8042 0 322 320 87 0 chr4 135420088 135420191 -66908156 - L2 LINE L2 -42 3230 3119 1431 293 81 30 chr4 135420212 135420973 -66907374 + L2 LINE L2 2422 3222 -91 2243 221 86 41 chr4 135420996 135421657 -66906690 + L1M4 LINE L1 3331 4033 -2113 2076 133 39 31 chr4 135421657 135422017 -66906330 - THE1B LTR MaLR -1 363 1 2243 221 86 41 chr4 135422017 135422119 -66906228 + L1M4 LINE L1 4033 4129 -2017 3431 214 79 13 chr4 135422135 135423858 -66904489 + L1PB1 LINE L1 6 1987 -4876 1916 177 10 8 chr4 135423850 135427394 -66900953 + L1PB1 LINE L1 2948 6584 -315 * 627 82 9 18 chr4 135427394 135427504 -66900843 + (TA)n Simple_repeat Simple_repeat 1 109 0 1916 177 10 8 chr4 135427504 135427821 -66900526 + L1PB1 LINE L1 6584 6899 0 2798 196 47 30 chr4 135427822 135428527 -66899820 + L1M4 LINE L1 4114 4830 -1316 195 129 0 0 chr4 135428541 135428572 -66899775 + (TG)n Simple_repeat Simple_repeat 2 32 0 4542 20 15 0 chr4 135428598 135429140 -66899207 - L1P2 LINE L1 -352 5803 5254 1292 30 0 42 chr4 135429146 135429358 -66898989 + L1PA4 LINE L1 5971 6175 0 1491 205 96 35 chr4 135429358 135429811 -66898536 + L1M4 LINE L1 4855 5335 -811 5435 189 31 29 chr4 135429815 135430132 -66898215 + L1MB8 LINE L1 4083 4398 -1780 185 0 40 0 chr4 135430132 135430157 -66898190 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 5435 189 31 29 chr4 135430157 135431035 -66897312 + L1MB8 LINE L1 4398 5273 -905 4008 122 24 8 chr4 135431035 135431672 -66896675 + L1PA16 LINE L1 5511 6157 -9 5435 189 31 29 chr4 135431672 135432561 -66895786 + L1MB8 LINE L1 5273 6173 -5 22 0 0 0 chr4 135433149 135433171 -66895176 + AT_rich Low_complexity Low_complexity 1 22 0 471 258 17 8 chr4 135433308 135433428 -66894919 + MER5B DNA MER1_type 57 177 -1 297 293 61 0 chr4 135434447 135434546 -66893801 - MIR SINE MIR -50 212 108 2064 135 18 47 chr4 135434592 135434978 -66893369 - THE1C LTR MaLR 0 375 1 6310 92 7 8 chr4 135435222 135436291 -66892056 + L1PA14 LINE L1 4308 5403 -758 3416 186 40 72 chr4 135436291 135437292 -66891055 - LTR5 LTR ERVK 0 969 1 6310 92 7 8 chr4 135437292 135438051 -66890296 + L1PA14 LINE L1 5403 6161 0 237 65 0 0 chr4 135438358 135438389 -66889958 + (TC)n Simple_repeat Simple_repeat 2 32 0 285 29 0 0 chr4 135438391 135438425 -66889922 + (CA)n Simple_repeat Simple_repeat 1 34 0 983 223 33 58 chr4 135438447 135438721 -66889626 + MLT2B1 LTR ERVL 1 267 -253 2503 131 24 26 chr4 135438906 135439363 -66888984 + L1MC2 LINE L1 5881 6336 -8 847 213 56 9 chr4 135439449 135439748 -66888599 + MLT1A1 LTR MaLR 1 365 0 239 289 119 13 chr4 135440295 135440454 -66887893 + LTR33 LTR ERVL 263 438 -83 3068 140 12 17 chr4 135441028 135441586 -66886761 + MLT2B2 LTR ERVL 1 520 0 363 269 26 0 chr4 135442172 135442272 -66886075 - MER20B DNA MER1_type -62 157 53 22 35 0 0 chr4 135443440 135443469 -66884878 + AT_rich Low_complexity Low_complexity 1 29 0 396 208 0 38 chr4 135445490 135445596 -66882751 + L1MA5A LINE L1 6177 6278 -19 583 244 57 11 chr4 135447769 135447945 -66880402 - MIR SINE MIR -58 204 21 234 382 55 0 chr4 135448509 135448619 -66879728 - L2 LINE L2 -20 3252 3137 399 330 152 13 chr4 135448691 135449158 -66879189 + L2 LINE L2 1981 2512 -802 247 267 163 59 chr4 135449160 135449362 -66878985 - L2 LINE L2 -1 3312 3090 1598 339 133 25 chr4 135449574 135450664 -66877683 - L2 LINE L2 -641 2673 1466 181 319 86 64 chr4 135450817 135450906 -66877441 - L2 LINE L2 -2236 1078 992 1911 127 15 0 chr4 135450906 135451200 -66877147 + AluSx SINE Alu 11 308 0 181 319 86 64 chr4 135451200 135451275 -66877072 - L2 LINE L2 -2322 992 920 180 0 0 0 chr4 135451275 135451295 -66877052 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 181 319 86 64 chr4 135451295 135451441 -66876906 - L2 LINE L2 -2394 920 759 380 306 93 44 chr4 135452008 135452419 -66875928 - MLT1J LTR MaLR -4 507 120 374 271 38 86 chr4 135452419 135452629 -66875718 + MER20 DNA MER1_type 1 200 -19 229 200 183 0 chr4 135452697 135452757 -66875590 - MLT1L LTR MaLR -540 75 5 2561 151 16 25 chr4 135453388 135453826 -66874521 + Tigger2a DNA MER2_type 1 434 0 619 239 0 15 chr4 135454518 135454648 -66873699 + FLAM_A SINE Alu 1 128 -5 189 356 96 0 chr4 135454904 135454977 -66873370 - L2 LINE L2 -66 3206 3127 33011 102 11 59 chr4 135455074 135461548 -66866799 - L1PA7 LINE L1 -2 6152 12 252 0 0 0 chr4 135461553 135461581 -66866766 + (A)n Simple_repeat Simple_repeat 1 28 0 265 374 141 16 chr4 135461585 135461907 -66866440 - L2 LINE L2 -253 3019 2661 474 277 36 22 chr4 135462056 135462193 -66866154 + MIR SINE MIR 47 185 -77 1725 152 167 43 chr4 135462207 135462345 -66866002 + LTR47A LTR ERVL 9 128 -324 2158 168 44 0 chr4 135462345 135462731 -66865616 - MER57A LTR ERV1 0 403 1 1725 152 167 43 chr4 135462731 135462987 -66865360 + LTR47A LTR ERVL 128 452 0 286 196 0 0 chr4 135463174 135463225 -66865122 + L2 LINE L2 3263 3313 0 290 384 0 22 chr4 135463275 135463413 -66864934 - L2 LINE L2 -1030 2284 2150 198 0 0 0 chr4 135464100 135464122 -66864225 + (TAA)n Simple_repeat Simple_repeat 1 22 0 2182 110 3 7 chr4 135464264 135464564 -66863783 - AluSp SINE Alu -10 303 5 2046 133 7 0 chr4 135464687 135464988 -66863359 - AluSx SINE Alu -9 303 1 458 209 0 64 chr4 135468870 135468980 -66859367 - FLAM_A SINE Alu -18 124 22 43074 49 3 1 chr4 135469626 135475765 -66852582 + L1PA4 LINE L1 7 6155 0 191 319 71 26 chr4 135476484 135476597 -66851750 + MIR SINE MIR 36 153 -55 378 202 46 9 chr4 135476597 135476706 -66851641 + L1ME4a LINE L1 5491 5603 -518 991 245 61 0 chr4 135476730 135476975 -66851372 - MIR SINE MIR 0 262 3 233 239 7 84 chr4 135477289 135477431 -66850916 + L1ME4a LINE L1 5976 6106 -15 181 315 0 0 chr4 135477431 135477485 -66850862 + MIR3 SINE MIR 141 194 -14 21 36 0 0 chr4 135481746 135481774 -66846573 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 135482029 135482051 -66846296 + AT_rich Low_complexity Low_complexity 1 22 0 277 242 61 0 chr4 135482132 135482198 -66846149 + MER5B DNA MER1_type 1 70 -108 313 234 18 90 chr4 135482563 135482674 -66845673 + MIR SINE MIR 90 192 -70 217 369 6 65 chr4 135484004 135484172 -66844175 - L2 LINE L2 -172 3100 2943 317 351 203 12 chr4 135484235 135484648 -66843699 - L2 LINE L2 -521 2793 2302 979 76 0 0 chr4 135484995 135485113 -66843234 + AluSc SINE Alu 172 289 -20 382 339 85 24 chr4 135485210 135485375 -66842972 - MIR3 SINE MIR -23 185 11 324 291 23 0 chr4 135485942 135486028 -66842319 + MER5B DNA MER1_type 87 174 -4 646 42 0 62 chr4 135486102 135486198 -66842149 - L1PA5 LINE L1 -2 6152 6063 249 208 215 39 chr4 135487407 135487537 -66840810 + L1ME3A LINE L1 6016 6168 -2 1464 258 131 68 chr4 135487545 135488553 -66839794 + HAL1 LINE L1 26 1097 -1410 1780 257 40 40 chr4 135488590 135489274 -66839073 + HAL1 LINE L1 1397 2080 -427 658 207 7 21 chr4 135489276 135489421 -66838926 + L1MC2 LINE L1 38 180 -6216 343 155 124 72 chr4 135489417 135489514 -66838833 + L1MC2 LINE L1 2722 2823 -3392 * 3161 147 10 2 chr4 135489511 135490027 -66838320 + L1MC2 LINE L1 5436 5955 -458 704 227 90 13 chr4 135490037 135490330 -66838017 + L1ME1 LINE L1 4411 4759 -1387 618 198 40 17 chr4 135490866 135491043 -66837304 + L1ME1 LINE L1 4753 4933 -1213 1224 189 97 53 chr4 135491044 135491499 -66836848 - MER39 LTR ERV1 -1 706 232 1505 203 54 20 chr4 135491561 135492047 -66836300 + L1ME1 LINE L1 4931 5428 -751 283 220 51 0 chr4 135492051 135492169 -66836178 + (TA)n Simple_repeat Simple_repeat 2 125 0 2282 192 21 25 chr4 135492189 135492914 -66835433 + L1ME1 LINE L1 5395 6161 -5 366 245 0 0 chr4 135492958 135493052 -66835295 + HAL1 LINE L1 2116 2209 -298 407 241 125 25 chr4 135493055 135493260 -66835087 - L1P5 LINE L1 -721 5430 5209 332 234 25 114 chr4 135493660 135493742 -66834605 + MIR SINE MIR 119 182 -80 4939 94 139 0 chr4 135493742 135494467 -66833880 - LTR12 LTR ERV1 0 826 1 332 234 25 114 chr4 135494467 135494542 -66833805 + MIR SINE MIR 182 262 0 1621 132 50 59 chr4 135494554 135494918 -66833429 - MSTB LTR MaLR 0 426 1 349 73 0 229 chr4 135494973 135495069 -66833278 - MADE1 DNA Mariner -5 75 2 237 254 0 0 chr4 135496145 135496200 -66832147 + MER63A DNA MER1_type 156 210 0 181 227 13 27 chr4 135496529 135496604 -66831743 + GA-rich Low_complexity Low_complexity 6 79 0 485 218 14 49 chr4 135497278 135497420 -66830927 - MLT1F LTR MaLR -6 536 400 502 297 37 34 chr4 135497589 135497885 -66830462 - MLT1G-int LTR MaLR -830 541 245 590 261 137 89 chr4 135498026 135498559 -66829788 - MLT1G LTR MaLR -3 564 8 24 0 0 0 chr4 135498802 135498826 -66829521 + AT_rich Low_complexity Low_complexity 1 24 0 372 303 43 31 chr4 135499729 135499891 -66828456 + MIR SINE MIR 20 183 -79 21 0 0 0 chr4 135500855 135500876 -66827471 + AT_rich Low_complexity Low_complexity 1 21 0 538 186 8 0 chr4 135501564 135501682 -66826665 - L1MB4 LINE L1 -1 6179 6061 23 68 0 0 chr4 135502641 135502685 -66825662 + AT_rich Low_complexity Low_complexity 1 44 0 2041 135 7 3 chr4 135502695 135502992 -66825355 + AluSq SINE Alu 1 298 -15 1271 251 25 19 chr4 135503187 135503546 -66824801 - MLT2E LTR ERVL -206 422 62 1502 206 31 22 chr4 135504322 135504677 -66823670 - MER89 LTR ERV1 -22 537 180 334 169 0 0 chr4 135504678 135504743 -66823604 - MER89 LTR ERV1 -494 65 1 188 343 0 0 chr4 135504946 135505013 -66823334 + L2 LINE L2 2688 2754 -560 291 307 0 13 chr4 135505051 135505126 -66823221 - L2 LINE L2 0 3272 3199 347 352 0 19 chr4 135505200 135505308 -66823039 + L1MDb LINE L1 162 267 -6142 3625 202 42 88 chr4 135505519 135507264 -66821083 + L1MDb LINE L1 669 2315 -4091 191 339 0 0 chr4 135507531 135507587 -66820760 + L2 LINE L2 2429 2484 -830 1204 177 153 0 chr4 135507678 135507966 -66820381 + Charlie1b DNA MER1_type 1 332 -191 2049 79 31 3 chr4 135507974 135508323 -66820024 - LTR7 LTR ERV1 -2 448 1 2268 96 50 13 chr4 135508323 135508699 -66819648 - HERVH LTR ERV1 0 7713 7324 1315 121 23 0 chr4 135508699 135508914 -66819433 - HERVH LTR ERV1 -1894 5819 5600 6725 159 0 2 chr4 135508915 135510607 -66817740 - HERVH LTR ERV1 -2564 5149 3492 916 115 7 0 chr4 135510599 135510747 -66817600 - HERVH LTR ERV1 -4425 3288 3140 * 18540 93 30 16 chr4 135510741 135513689 -66814658 - HERVH LTR ERV1 -4726 2987 1 2018 93 31 3 chr4 135513691 135514040 -66814307 - LTR7 LTR ERV1 -2 448 1 450 179 113 24 chr4 135514040 135514208 -66814139 + Charlie1b DNA MER1_type 336 518 -5 347 158 0 0 chr4 135514526 135514583 -66813764 + MER34C LTR ERV1 37 93 -492 386 222 33 16 chr4 135514726 135514888 -66813459 + LTR48 LTR ERV1 380 537 -5 1015 232 39 84 chr4 135515037 135515607 -66812740 - MER34 LTR ERV1 0 682 1 316 353 75 29 chr4 135515628 135515801 -66812546 + L2 LINE L2 3090 3270 -2 2239 128 0 0 chr4 135517607 135517912 -66810435 + AluSx SINE Alu 1 305 -7 814 300 119 16 chr4 135519445 135519892 -66808455 - MLT1J LTR MaLR -18 493 1 369 248 92 13 chr4 135519966 135520119 -66808228 + MER103 DNA DNA 1 165 -1 2156 167 48 19 chr4 135520388 135520808 -66807539 + MSTB1 LTR MaLR 1 432 0 472 260 48 132 chr4 135521353 135521457 -66806890 + MIR SINE MIR 7 118 -144 1965 149 0 7 chr4 135521457 135521745 -66806602 - AluJo SINE Alu -26 286 1 472 260 48 132 chr4 135521745 135521913 -66806434 + MIR SINE MIR 118 256 -6 784 272 46 9 chr4 135521939 135522156 -66806191 + MIR SINE MIR 8 232 -30 285 208 0 94 chr4 135522173 135522269 -66806078 - HsTC2 DNA Tc2 -1811 87 1 1274 189 15 4 chr4 135523714 135523979 -66804368 - MER93b LTR ERV1 0 373 106 691 144 7 72 chr4 135523979 135524132 -66804215 - MER93b LTR ERV1 -211 162 20 1193 214 59 28 chr4 135524132 135524648 -66803699 - MER34B LTR ERV1 0 565 1 1952 177 57 9 chr4 135526324 135526763 -66801584 - Charlie1b DNA MER1_type -18 505 46 4405 62 10 0 chr4 135526763 135527322 -66801025 + LTR10C LTR ERV1 1 568 -23 11190 28 0 1 chr4 135527322 135529415 -66798932 - L1PA3 LINE L1 -1 6154 4063 4405 62 10 0 chr4 135529415 135529440 -66798907 + LTR10C LTR ERV1 568 591 0 1358 116 23 0 chr4 135529595 135529810 -66798537 - L1PA14 LINE L1 -4 6157 5938 267 326 104 0 chr4 135529826 135529961 -66798386 - MIR SINE MIR -65 197 49 1622 230 38 5 chr4 135530012 135530382 -66797965 - MLT1E2 LTR MaLR 0 626 245 21 57 0 0 chr4 135530885 135530920 -66797427 + AT_rich Low_complexity Low_complexity 1 35 0 206 270 14 27 chr4 135531273 135531347 -66797000 + GA-rich Low_complexity Low_complexity 2 74 0 2102 180 13 13 chr4 135531929 135532313 -66796034 - MLT1B LTR MaLR -6 384 1 2441 165 30 48 chr4 135532431 135532995 -66795352 - MER34B LTR ERV1 0 565 12 2198 151 118 0 chr4 135533320 135533703 -66794644 + MSTC LTR MaLR 1 428 0 3943 164 37 29 chr4 135533776 135534608 -66793739 - L1MA10 LINE L1 -56 6278 5440 3813 164 19 46 chr4 135534608 135535410 -66792937 + L1 LINE L1 4538 5322 -842 2122 92 48 14 chr4 135535410 135535702 -66792645 + AluSx SINE Alu 1 302 -10 3813 164 19 46 chr4 135535702 135535800 -66792547 + L1 LINE L1 5322 5421 -743 525 151 0 19 chr4 135536249 135536355 -66791992 - L1MB3 LINE L1 0 6183 6080 22 0 0 0 chr4 135536467 135536489 -66791858 + AT_rich Low_complexity Low_complexity 1 22 0 1714 132 27 14 chr4 135537387 135537683 -66790664 + MER34C LTR ERV1 5 304 -281 672 202 17 0 chr4 135537683 135537802 -66790545 - FLAM_C SINE Alu -15 128 8 966 148 103 81 chr4 135537809 135538080 -66790267 + MER34C LTR ERV1 309 585 0 271 332 84 0 chr4 135538097 135538287 -66790060 - L1ME LINE L1 -312 5809 5604 256 240 31 31 chr4 135538466 135538595 -66789752 - L1ME LINE L1 -779 5399 5271 1194 138 20 10 chr4 135538786 135538989 -66789358 - MER50 LTR ERV1 0 734 530 1219 119 21 10 chr4 135538993 135539186 -66789161 + L1PA16 LINE L1 5970 6164 -2 2414 86 0 0 chr4 135539240 135539542 -66788805 + AluSc SINE Alu 1 302 -7 346 174 54 33 chr4 135539848 135539940 -66788407 + MER65B LTR ERV1 5 98 -433 3948 151 113 11 chr4 135541146 135541895 -66786452 + LTR1B LTR ERV1 1 826 0 2188 124 7 0 chr4 135541970 135542268 -66786079 + AluSx SINE Alu 1 300 -12 752 270 112 48 chr4 135542271 135543367 -66784980 + L1MC/D LINE L1 4382 5560 -743 212 333 159 42 chr4 135543466 135543655 -66784692 - L2 LINE L2 -95 3177 2967 2001 112 0 14 chr4 135544509 135544785 -66783562 - AluSx SINE Alu -19 293 22 265 269 43 82 chr4 135545107 135545221 -66783126 - L1ME LINE L1 -233 5888 5771 1981 159 0 3 chr4 135545221 135545517 -66782830 - AluSx SINE Alu -17 295 1 265 269 43 82 chr4 135545517 135545684 -66782663 - L1ME LINE L1 -350 5771 5618 276 256 158 0 chr4 135546846 135546928 -66781419 + MIR SINE MIR 140 234 -28 252 352 33 0 chr4 135546958 135547049 -66781298 + MIR3 SINE MIR 101 194 -14 920 269 191 19 chr4 135547280 135547533 -66780814 + L2 LINE L2 2822 3030 -283 1943 189 83 10 chr4 135547533 135547930 -66780417 - MSTB LTR MaLR 0 426 1 920 269 191 19 chr4 135547930 135548096 -66780251 + L2 LINE L2 3030 3313 0 21 0 0 0 chr4 135548486 135548507 -66779840 + GC_rich Low_complexity Low_complexity 1 21 0 776 337 44 41 chr4 135548851 135549459 -66778888 + L1PA13 LINE L1 1 610 -6177 2041 102 6 54 chr4 135549831 135550145 -66778202 + AluSx SINE Alu 4 302 -10 1230 186 4 20 chr4 135550162 135550415 -66777932 + MSTA LTR MaLR 180 428 0 4052 212 64 130 chr4 135550415 135551396 -66776951 - L1M2c LINE L1 -5054 1735 752 1220 145 0 0 chr4 135551396 135551562 -66776785 - AluJb SINE Alu -142 170 5 4052 212 64 130 chr4 135551562 135552242 -66776105 - L1M2c LINE L1 -6037 752 29 201 121 0 0 chr4 135552386 135552419 -66775928 + (CA)n Simple_repeat Simple_repeat 2 34 0 2012 143 44 0 chr4 135552491 135552784 -66775563 + AluJb SINE Alu 1 306 -6 2010 122 3 7 chr4 135553230 135553516 -66774831 + AluSq SINE Alu 1 285 -28 1011 135 0 0 chr4 135553517 135553687 -66774660 + (GA)n Simple_repeat Simple_repeat 1 170 0 185 0 0 39 chr4 135554000 135554026 -66774321 + (CATATA)n Simple_repeat Simple_repeat 2 26 0 24 0 0 0 chr4 135554459 135554483 -66773864 + AT_rich Low_complexity Low_complexity 1 24 0 218 279 57 49 chr4 135555323 135555445 -66772902 - MIR SINE MIR -90 172 50 34 24 0 0 chr4 135556216 135556257 -66772090 + AT_rich Low_complexity Low_complexity 1 41 0 2509 99 6 11 chr4 135556455 135556817 -66771530 + THE1C LTR MaLR 16 375 0 9840 107 26 47 chr4 135556817 135558421 -66769926 + THE1C-int LTR MaLR 1 1571 -9 2691 89 19 11 chr4 135558423 135558795 -66769552 + THE1C LTR MaLR 1 375 0 681 256 60 45 chr4 135558897 135559315 -66769032 - LTR37B LTR ERV1 -37 431 8 301 278 28 38 chr4 135559352 135559607 -66768740 - L1MC/D LINE L1 -301 5820 5579 346 262 0 10 chr4 135560104 135560207 -66768140 + L1MB5 LINE L1 5709 5810 -1998 786 278 196 49 chr4 135560426 135561277 -66767070 - L2 LINE L2 -281 2991 2034 30 59 0 0 chr4 135561530 135561581 -66766766 + AT_rich Low_complexity Low_complexity 1 51 0 2831 174 12 9 chr4 135561724 135562288 -66766059 + L1MB7 LINE L1 5600 6165 -19 796 172 237 29 chr4 135562643 135562951 -66765396 + LTR50 LTR ERVL 1 372 -423 537 181 19 0 chr4 135562963 135563068 -66765279 - L1M4 LINE L1 -366 5808 5702 1682 168 3 3 chr4 135563070 135563362 -66764985 + L1MB5 LINE L1 5874 6165 -9 689 129 81 0 chr4 135563563 135563687 -66764660 - MER3 DNA MER1_type -1 208 75 253 203 31 0 chr4 135563689 135563753 -66764594 + MER52A LTR ERV1 1 66 -1689 241 168 0 17 chr4 135563950 135564020 -66764327 + MER52A LTR ERV1 55 376 -902 6355 209 37 11 chr4 135564211 135565629 -66762718 + MER52A LTR ERV1 365 1755 0 336 200 86 0 chr4 135565629 135565699 -66762648 - MER3 DNA MER1_type -133 76 1 1021 279 92 0 chr4 135567170 135567475 -66760872 + LTR16C LTR ERVL 159 491 0 584 300 182 0 chr4 135567485 135567705 -66760642 - MIR SINE MIR -1 261 2 1035 277 94 26 chr4 135567946 135568055 -66760292 + MLT1H1 LTR MaLR 7 107 -448 3488 70 20 0 chr4 135568055 135568499 -66759848 - MLT2A2 LTR ERVL 0 453 1 1035 277 94 26 chr4 135568499 135568728 -66759619 + MLT1H1 LTR MaLR 107 368 -187 3239 207 57 2 chr4 135568740 135569528 -66758819 + MER97b DNA MER1_type? 32 862 -191 303 177 0 32 chr4 135569677 135569739 -66758608 - Alu SINE Alu -1 301 242 432 225 6 58 chr4 135569746 135569919 -66758428 + MER97c DNA MER1_type? 898 1061 -29 573 243 55 28 chr4 135569932 135570113 -66758234 + MLT1H1 LTR MaLR 370 555 0 1995 153 3 13 chr4 135570410 135570724 -66757623 - AluJb SINE Alu -1 311 1 505 213 56 0 chr4 135570749 135570857 -66757490 - L2 LINE L2 -13 3300 3187 899 136 0 0 chr4 135571013 135571138 -66757209 + AluSg/x SINE Alu 167 291 -21 496 286 0 42 chr4 135571179 135571347 -66757000 - MLT1K LTR MaLR -111 477 317 309 222 0 0 chr4 135571356 135571410 -66756937 + L2 LINE L2 3219 3272 0 2265 107 3 0 chr4 135571546 135571854 -66756493 - AluSq SINE Alu 0 313 5 241 286 0 16 chr4 135572236 135572299 -66756048 - L2 LINE L2 -15 3257 3196 4155 188 68 16 chr4 135572808 135574058 -66754289 + L1MD2 LINE L1 4724 6050 -309 2076 108 0 0 chr4 135574058 135574327 -66754020 + AluSg SINE Alu 35 303 -7 4155 188 68 16 chr4 135574327 135574484 -66753863 + L1MD2 LINE L1 6050 6197 -162 380 179 24 0 chr4 135574497 135574581 -66753766 + L1MD2 LINE L1 6264 6349 -10 2747 35 0 0 chr4 135574900 135575210 -66753137 + AluY SINE Alu 1 310 -1 1447 153 18 0 chr4 135575410 135575657 -66752690 + AluJo SINE Alu 86 336 0 381 305 39 17 chr4 135575693 135575832 -66752515 - MIR SINE MIR -61 147 9 428 232 54 77 chr4 135576056 135576224 -66752123 - MIR SINE MIR -50 212 49 1373 287 47 18 chr4 135576556 135577352 -66750995 - L1ME3A LINE L1 -219 5951 5131 639 283 143 19 chr4 135577420 135578160 -66750187 - L1ME3A LINE L1 -2320 3826 2998 639 125 17 8 chr4 135578192 135578312 -66750035 - L1MA7 LINE L1 -6 6285 6165 522 275 84 28 chr4 135578402 135578686 -66749661 - L1M4 LINE L1 -2838 3308 3009 815 290 79 76 chr4 135578692 135579310 -66749037 - L1M4 LINE L1 -3276 2870 2251 380 37 19 0 chr4 135579313 135579367 -66748980 + (TG)n Simple_repeat Simple_repeat 1 55 0 23 68 0 0 chr4 135579401 135579445 -66748902 + AT_rich Low_complexity Low_complexity 1 44 0 778 288 74 21 chr4 135579743 135580069 -66748278 - L2 LINE L2 -188 3125 2785 1151 182 143 31 chr4 135580322 135580679 -66747668 + MLT2C1 LTR ERVL 1 397 0 2441 78 0 0 chr4 135581194 135581490 -66746857 - AluY SINE Alu -15 296 1 2114 132 11 6 chr4 135582406 135582761 -66745586 - Tigger1 DNA MER2_type -1 2417 2061 2194 97 3 10 chr4 135582763 135583062 -66745285 + AluSq SINE Alu 1 297 -16 375 179 39 0 chr4 135583074 135583152 -66745195 + MER57A LTR ERV1 295 375 -28 1495 142 0 0 chr4 135583155 135583408 -66744939 - Tigger1 DNA MER2_type -341 2077 1825 8010 123 19 11 chr4 135583408 135584610 -66743737 + L1PA15-16 LINE L1 1340 2532 -4317 2092 130 3 3 chr4 135584610 135584918 -66743429 + AluSx SINE Alu 1 308 -4 2451 57 20 0 chr4 135584922 135585218 -66743129 + AluY SINE Alu 1 302 -9 8010 123 19 11 chr4 135585218 135585351 -66742996 + L1PA15-16 LINE L1 2534 2690 -4159 * 40850 34 21 1 chr4 135585346 135591378 -66736969 + L1PA2 LINE L1 1 6155 0 3032 143 83 44 chr4 135591380 135592042 -66736305 + Tigger3(Golem) DNA MER2_type 2340 3027 -2 1488 164 174 3 chr4 135592087 135592392 -66735955 - MLT1A1 LTR MaLR 0 365 9 450 280 96 32 chr4 135592549 135592706 -66735641 + MIR3 SINE MIR 32 198 -10 2212 93 0 35 chr4 135592769 135593079 -66735268 - AluSq SINE Alu -14 299 1 1117 178 58 0 chr4 135593319 135593484 -66734863 - AluJb SINE Alu -16 296 115 266 0 29 0 chr4 135593484 135593518 -66734829 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1117 178 58 0 chr4 135593518 135593560 -66734787 - AluJb SINE Alu -197 115 77 201 326 0 0 chr4 135593560 135593609 -66734738 - L2 LINE L2 -15 3298 3250 500 176 28 0 chr4 135593637 135593745 -66734602 + FLAM_A SINE Alu 22 132 -10 1759 50 0 0 chr4 135594899 135595117 -66733230 - L1PA5 LINE L1 -3 6151 5934 2361 75 7 0 chr4 135596040 135596332 -66732015 - AluSg SINE Alu -16 294 1 1711 185 11 0 chr4 135596625 135596912 -66731435 + AluJo SINE Alu 1 290 -22 31 0 0 0 chr4 135596913 135596944 -66731403 + AT_rich Low_complexity Low_complexity 1 31 0 37 52 0 0 chr4 135597705 135597763 -66730584 + AT_rich Low_complexity Low_complexity 1 58 0 1555 172 12 0 chr4 135597979 135598229 -66730118 - AluJo SINE Alu -23 289 37 22 35 0 0 chr4 135599296 135599325 -66729022 + AT_rich Low_complexity Low_complexity 1 29 0 354 323 101 30 chr4 135599794 135599992 -66728355 - MIR SINE MIR -48 214 3 2316 71 7 0 chr4 135600352 135600632 -66727715 - AluSp SINE Alu -16 297 16 41 0 0 0 chr4 135600809 135600850 -66727497 + AT_rich Low_complexity Low_complexity 1 41 0 638 269 161 32 chr4 135601260 135601669 -66726678 - LTR16B LTR ERVL 0 464 3 24 67 0 0 chr4 135602363 135602408 -66725939 + AT_rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr4 135602600 135602631 -66725716 + AT_rich Low_complexity Low_complexity 1 31 0 386 326 110 45 chr4 135602733 135602978 -66725369 - L2 LINE L2 0 3272 3012 488 152 10 10 chr4 135603037 135603136 -66725211 - L1MA6 LINE L1 0 6300 6202 980 53 0 5 chr4 135603951 135604237 -66724110 - AluY SINE Alu 0 332 1 25 0 0 0 chr4 135604592 135604617 -66723730 + AT_rich Low_complexity Low_complexity 1 25 0 377 188 36 62 chr4 135604732 135604844 -66723503 - L1MA10 LINE L1 -1 6333 6225 966 276 155 3 chr4 135604857 135605238 -66723109 + L1MC4 LINE L1 5377 5815 -1993 233 213 12 62 chr4 135605240 135605320 -66723027 - LTR40a LTR ERVL -443 76 1 470 284 5 99 chr4 135605320 135605521 -66722826 + L1MC4 LINE L1 6772 6953 -1089 2284 248 138 65 chr4 135605548 135605937 -66722410 + L1MC4 LINE L1 6274 6633 -1409 1983 223 50 16 chr4 135605937 135606439 -66721908 - LTR40a LTR ERVL 0 519 1 2284 248 138 65 chr4 135606439 135607110 -66721237 + L1MC4 LINE L1 6633 7254 -788 1478 170 23 11 chr4 135607110 135607375 -66720972 + AluJb SINE Alu 1 268 -44 2284 248 138 65 chr4 135607375 135607879 -66720468 + L1MC4 LINE L1 7254 8042 0 2133 117 7 0 chr4 135609298 135609589 -66718758 - AluSx SINE Alu -19 293 1 27 49 0 0 chr4 135609974 135610015 -66718332 + AT_rich Low_complexity Low_complexity 1 41 0 2709 171 25 27 chr4 135610622 135610713 -66717634 - MER70B LTR ERVL -103 475 385 2339 110 3 0 chr4 135610713 135611021 -66717326 + AluSx SINE Alu 1 309 -3 2709 171 25 27 chr4 135611021 135611403 -66716944 - MER70B LTR ERVL -193 385 3 252 314 10 29 chr4 135611646 135611748 -66716599 - L3 LINE CR1 -45 1532 1433 1180 263 80 33 chr4 135611817 135612216 -66716131 + LTR16A LTR ERVL 30 447 -3 401 301 41 0 chr4 135612219 135612342 -66716005 - L3 LINE CR1 -207 1370 1243 194 294 265 20 chr4 135612351 135612453 -66715894 - L2 LINE L2 -1176 2138 2012 2096 218 127 18 chr4 135612558 135613133 -66715214 - MLT1E2 LTR MaLR 0 626 3 223 279 58 64 chr4 135613135 135613307 -66715040 + L2 LINE L2 1245 1415 -1899 1815 210 19 60 chr4 135613313 135613798 -66714549 - MLT1C LTR MaLR 0 467 3 309 346 49 5 chr4 135614100 135614285 -66714062 + L2 LINE L2 1773 1965 -1349 392 261 93 81 chr4 135614457 135614618 -66713729 + L2 LINE L2 2667 2829 -485 3912 154 7 14 chr4 135614681 135615162 -66713185 + L1PB4 LINE L1 5468 5944 -212 2078 131 134 11 chr4 135615162 135615543 -66712804 - MSTA LTR MaLR 0 428 1 3912 154 7 14 chr4 135615543 135615755 -66712592 + L1PB4 LINE L1 5944 6156 0 547 310 141 31 chr4 135615995 135616350 -66711997 - L3 LINE CR1 -611 966 573 352 278 56 33 chr4 135616776 135616956 -66711391 + L2 LINE L2 1513 1696 -1618 1652 127 0 0 chr4 135617267 135617520 -66710827 - L1PA16 LINE L1 -4 6162 5910 573 167 35 9 chr4 135617818 135617932 -66710415 - FLAM_A SINE Alu -3 139 23 582 262 195 16 chr4 135617978 135618425 -66709922 - L1ME4a LINE L1 -6 6115 5589 382 233 204 67 chr4 135618429 135618669 -66709678 + HAL1 LINE L1 483 755 -1752 309 271 12 12 chr4 135619023 135619108 -66709239 + L2 LINE L2 3229 3313 0 347 301 111 92 chr4 135619258 135619853 -66708494 - L1M2 LINE L1 -5421 1428 823 268 235 114 61 chr4 135622342 135622474 -66705873 + MIR SINE MIR 47 185 -77 181 286 39 65 chr4 135622611 135622688 -66705659 - MIR SINE MIR -104 104 30 21 57 0 0 chr4 135622867 135622902 -66705445 + AT_rich Low_complexity Low_complexity 1 35 0 298 279 32 21 chr4 135622974 135623112 -66705235 - MIR SINE MIR -66 196 38 22 35 0 0 chr4 135623765 135623794 -66704553 + AT_rich Low_complexity Low_complexity 1 29 0 510 262 158 0 chr4 135624931 135625095 -66703252 - MIR SINE MIR -14 248 59 442 261 60 10 chr4 135625209 135625362 -66702985 - MER5A DNA MER1_type 0 178 10 277 305 84 46 chr4 135625900 135626162 -66702185 + L2 LINE L2 1324 1595 -1719 4047 105 11 46 chr4 135626163 135626821 -66701526 - MER41B LTR ERV1 0 635 1 26 0 0 0 chr4 135626932 135626958 -66701389 + AT_rich Low_complexity Low_complexity 1 26 0 786 167 87 48 chr4 135627270 135627614 -66700733 + MER34 LTR ERV1 27 433 -109 375 271 37 9 chr4 135627758 135627865 -66700482 - MER5A DNA MER1_type -29 160 51 508 191 21 0 chr4 135627868 135627962 -66700385 + MER34 LTR ERV1 447 542 0 304 332 133 31 chr4 135628491 135628687 -66699660 + MIR SINE MIR 47 262 0 21 0 0 0 chr4 135630185 135630206 -66698141 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 135630648 135630671 -66697676 + AT_rich Low_complexity Low_complexity 1 23 0 934 254 75 16 chr4 135632082 135632401 -66695946 - L1ME2 LINE L1 -9 6155 5818 1470 199 20 14 chr4 135632402 135632694 -66695653 + AluJo SINE Alu 1 294 -18 2171 96 0 10 chr4 135632757 135633048 -66695299 + AluSx SINE Alu 14 301 -11 311 368 112 25 chr4 135633532 135634008 -66694339 + L2 LINE L2 2553 3059 -213 274 118 20 0 chr4 135635400 135635451 -66692896 - L1MD3 LINE L1 -12 7983 7932 1326 106 20 0 chr4 135636473 135636671 -66691676 - L1P5 LINE L1 -500 5654 5453 1237 200 64 3 chr4 135636771 135637066 -66691281 - L1 LINE L1 -912 5234 4922 276 250 0 0 chr4 135637152 135637208 -66691139 - L1MC4 LINE L1 -186 7856 7801 240 105 0 0 chr4 135637209 135637247 -66691100 + Charlie3 DNA MER1_type 1 38 -2672 353 268 98 0 chr4 135637722 135637834 -66690513 - L2 LINE L2 0 3313 3191 376 0 0 37 chr4 135638063 135638117 -66690230 + L1HS LINE L1 6104 6155 0 660 197 21 28 chr4 135638505 135638647 -66689700 - L2 LINE L2 0 3313 3173 1318 138 49 0 chr4 135638653 135638878 -66689469 + MER46A DNA MER2_type 1 236 0 1002 252 50 14 chr4 135638892 135639170 -66689177 + LTR40a LTR ERVL 1 288 -231 277 178 259 15 chr4 135640517 135640652 -66687695 + L1ME4a LINE L1 5954 6121 0 2232 219 61 0 chr4 135640683 135641159 -66687188 + MLT1D LTR MaLR 1 505 0 588 257 114 57 chr4 135641471 135641962 -66686385 - L1MDa LINE L1 -3518 3022 2504 243 172 58 11 chr4 135642309 135642396 -66685951 + (TA)n Simple_repeat Simple_repeat 2 92 0 349 269 101 13 chr4 135642476 135642625 -66685722 - L1MDa LINE L1 -4502 2038 1877 1173 260 123 3 chr4 135642625 135642990 -66685357 - MLT1J2 LTR MaLR 0 450 42 266 286 56 24 chr4 135643021 135643147 -66685200 - HAL1 LINE L1 -923 1584 1455 230 257 40 0 chr4 135643171 135643245 -66685102 - L1MDa LINE L1 -5133 1397 1321 606 249 232 24 chr4 135645076 135645496 -66682851 - MLT1G1 LTR MaLR -64 478 1 24 53 0 0 chr4 135646139 135646177 -66682170 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chr4 135648561 135648594 -66679753 + AT_rich Low_complexity Low_complexity 1 33 0 40508 38 23 1 chr4 135649002 135654829 -66673518 - L1PA3 LINE L1 -197 5958 5 21 36 0 0 chr4 135654952 135654980 -66673367 + AT_rich Low_complexity Low_complexity 1 28 0 320 278 103 8 chr4 135655050 135655176 -66673171 + MIR3 SINE MIR 64 201 -7 23 0 0 0 chr4 135655341 135655364 -66672983 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 135655820 135655850 -66672497 + AT_rich Low_complexity Low_complexity 1 30 0 3615 110 4 17 chr4 135656033 135656569 -66671778 + MER1A DNA MER1_type 1 529 0 2325 149 78 0 chr4 135657402 135657799 -66670548 - MER1A DNA MER1_type -84 445 18 357 213 26 162 chr4 135657799 135658090 -66670257 + L1MC4 LINE L1 7803 8041 -1 248 305 171 26 chr4 135658600 135658869 -66669478 - L2 LINE L2 -575 2739 2432 184 326 251 29 chr4 135709647 135709822 -66618525 + MIR SINE MIR 28 241 -21 243 252 223 0 chr4 135709990 135710093 -66618254 + L1ME LINE L1 5621 5746 -375 2430 85 3 0 chr4 135710190 135710497 -66617850 + AluSq SINE Alu 1 308 -5 999 243 83 43 chr4 135710954 135711270 -66617077 + MER20B DNA MER1_type 138 473 -310 1062 142 123 5 chr4 135711270 135711481 -66616866 - MER46A DNA MER2_type 0 236 1 999 243 83 43 chr4 135711481 135711539 -66616808 + MER20B DNA MER1_type 473 527 -256 2176 122 10 0 chr4 135712286 135712589 -66615758 + AluSx SINE Alu 3 308 -4 1442 241 149 22 chr4 135712745 135713348 -66614999 + Charlie7 DNA MER1_type 44 723 -1889 407 323 141 23 chr4 135713379 135713642 -66614705 + L2 LINE L2 3015 3308 -5 338 152 93 40 chr4 135713644 135713795 -66614552 + Charlie7 DNA MER1_type 2437 2595 -17 2441 22 0 0 chr4 135713866 135714179 -66614168 - AluY SINE Alu 0 311 17 637 259 45 27 chr4 135714586 135714806 -66613541 + MIR SINE MIR 29 252 -10 449 148 199 23 chr4 135715181 135715357 -66612990 - MER96B DNA MER1_type? -118 299 93 354 152 22 54 chr4 135715383 135715475 -66612872 - LTR9 LTR ERV1 -86 526 438 1564 136 86 21 chr4 135715481 135715761 -66612586 - AluSx SINE Alu -14 298 1 229 100 0 186 chr4 135715761 135715831 -66612516 - MER96B DNA MER1_type? -317 100 44 273 182 18 0 chr4 135715970 135716025 -66612322 - AluJ/FRAM SINE Alu -16 286 231 413 236 76 89 chr4 135717405 135717562 -66610785 + MER5B DNA MER1_type 1 155 -23 296 172 0 47 chr4 135717611 135717675 -66610672 - Charlie1b DNA MER1_type -1 522 462 1200 149 19 37 chr4 135717703 135717918 -66610429 + AluJo SINE Alu 80 290 -22 1167 176 138 5 chr4 135717918 135718329 -66610018 - Charlie1b DNA MER1_type -50 473 6 2086 106 32 3 chr4 135718821 135719104 -66609243 - AluSx SINE Alu -21 291 1 1627 178 10 27 chr4 135719659 135719952 -66608395 - AluJo SINE Alu -22 290 3 700 257 193 18 chr4 135720093 135720424 -66607923 + L2 LINE L2 2925 3313 0 216 250 0 0 chr4 135720751 135720799 -66607548 - MIR SINE MIR 0 262 215 430 153 12 24 chr4 135721859 135721944 -66606403 - AluSg/x SINE Alu -18 292 209 1600 161 13 74 chr4 135722155 135722466 -66605881 - AluJb SINE Alu -20 292 1 8917 181 50 31 chr4 135722466 135724998 -66603349 - L1PA15-16 LINE L1 -3272 3577 1002 5944 170 104 25 chr4 135724997 135726247 -66602100 - L1 LINE L1 -1656 4490 3093 * 2838 158 27 4 chr4 135726247 135726733 -66601614 + LOR1a LTR ERV1 1 497 0 5944 170 104 25 chr4 135726733 135727027 -66601320 - L1 LINE L1 -3053 3093 2824 1815 177 0 19 chr4 135727197 135727514 -66600833 - AluJo SINE Alu -1 311 1 20896 179 28 22 chr4 135727728 135732806 -66595541 - L1P3 LINE L1 -1302 5159 12 205 182 0 0 chr4 135733031 135733064 -66595283 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 1893 152 3 14 chr4 135733124 135733420 -66594927 + AluJo SINE Alu 1 293 -19 2321 97 0 10 chr4 135733573 135733873 -66594474 + AluSg SINE Alu 1 297 -13 1281 142 19 77 chr4 135734440 135734700 -66593647 + AluSq SINE Alu 1 245 -68 2264 200 68 55 chr4 135735288 135735848 -66592499 - MLT1F1 LTR MaLR 0 567 1 1971 153 7 0 chr4 135736145 135736440 -66591907 + AluJb SINE Alu 1 297 -15 41333 52 5 1 chr4 135736448 135742577 -66585770 + L1PA3 LINE L1 1 6152 -3 25 51 0 0 chr4 135742577 135742616 -66585731 + AT_rich Low_complexity Low_complexity 1 39 0 362 293 14 41 chr4 135743858 135744005 -66584342 - MIR SINE MIR -25 237 95 344 172 8 47 chr4 135744414 135744542 -66583805 + CT-rich Low_complexity Low_complexity 2 124 0 794 264 149 28 chr4 135746058 135746693 -66581654 + L2 LINE L2 2476 3309 -4 241 324 81 27 chr4 135746976 135747124 -66581223 - MIR SINE MIR -94 168 13 546 186 119 0 chr4 135748485 135748603 -66579744 + MIR SINE MIR 104 235 -27 1886 157 3 22 chr4 135748784 135749102 -66579245 - AluJb SINE Alu 0 312 1 1565 192 6 50 chr4 135749187 135749510 -66578837 + AluJo SINE Alu 1 309 -3 220 143 12 71 chr4 135749517 135749601 -66578746 + GA-rich Low_complexity Low_complexity 4 82 0 3416 142 18 26 chr4 135750499 135751110 -66577237 - L1MC1 LINE L1 -11 6322 5717 1915 131 10 3 chr4 135751113 135751419 -66576928 - L1MC1 LINE L1 -707 5626 5319 * 7750 158 21 2 chr4 135751417 135751778 -66576569 - L1PB1 LINE L1 0 6151 5798 186 43 0 0 chr4 135751778 135751801 -66576546 + (TA)n Simple_repeat Simple_repeat 1 23 0 7750 158 21 2 chr4 135751801 135753845 -66574502 - L1PB1 LINE L1 -353 5798 3698 1259 226 67 8 chr4 135753952 135754311 -66574036 - L1MC1 LINE L1 -1453 4693 4314 1381 167 0 5 chr4 135754315 135754531 -66573816 + AluSx SINE Alu 5 219 -93 5077 225 36 11 chr4 135754588 135755891 -66572456 - L1MC1 LINE L1 -1889 4257 2922 812 219 11 109 chr4 135756105 135756379 -66571968 - L1MB8 LINE L1 -4 6174 5928 1974 140 15 18 chr4 135756392 135756727 -66571620 - L1MA6 LINE L1 -241 6059 5726 2070 127 3 3 chr4 135756826 135757117 -66571230 + AluSp SINE Alu 1 291 -22 343 67 0 0 chr4 135757138 135757183 -66571164 + Alu SINE Alu 1 45 -257 2183 82 0 4 chr4 135757185 135757465 -66570882 + AluY SINE Alu 18 296 -15 636 72 24 0 chr4 135758081 135758164 -66570183 + AluY SINE Alu 205 289 -22 3164 197 66 97 chr4 135759234 135760750 -66567597 + L1MC5 LINE L1 6424 7911 -50 1212 162 50 50 chr4 135761230 135761508 -66566839 + L1ME1 LINE L1 5539 5816 -350 365 233 0 0 chr4 135761525 135761598 -66566749 + L1ME1 LINE L1 6037 6109 -57 593 182 106 8 chr4 135761764 135761887 -66566460 - L1ME1 LINE L1 -150 6017 5885 882 171 47 33 chr4 135762048 135762259 -66566088 - L1ME1 LINE L1 -235 5931 5718 446 308 87 8 chr4 135762522 135762883 -66565464 - L1MC4a LINE L1 -302 5819 5526 21 0 0 0 chr4 135763172 135763193 -66565154 + AT_rich Low_complexity Low_complexity 1 21 0 574 154 8 131 chr4 135763414 135763544 -66564803 - FRAM SINE Alu -25 151 38 1670 112 20 20 chr4 135763646 135763897 -66564450 + AluSx SINE Alu 45 295 -17 1526 139 7 50 chr4 135765907 135766187 -66562160 + AluSx SINE Alu 44 311 -1 267 122 0 0 chr4 135766391 135766440 -66561907 + (TG)n Simple_repeat Simple_repeat 2 50 0 400 236 102 24 chr4 135766540 135766667 -66561680 - MARNA DNA Mariner -38 548 412 536 291 27 7 chr4 135766947 135767095 -66561252 - L2 LINE L2 0 3272 3122 25 0 0 0 chr4 135767698 135767723 -66560624 + AT_rich Low_complexity Low_complexity 1 25 0 1111 252 81 69 chr4 135767749 135768197 -66560150 + LTR16A LTR ERVL 5 450 0 324 0 0 0 chr4 135768477 135768513 -66559834 + (CA)n Simple_repeat Simple_repeat 1 36 0 28 48 0 0 chr4 135769100 135769142 -66559205 + AT_rich Low_complexity Low_complexity 1 42 0 1712 135 125 16 chr4 135770278 135770582 -66557765 + MER1B DNA MER1_type 1 337 0 243 257 10 79 chr4 135770941 135771042 -66557305 + MIR3 SINE MIR 114 207 -1 746 249 136 26 chr4 135771233 135771506 -66556841 - L2 LINE L2 -23 3290 2988 1338 144 13 31 chr4 135771507 135771736 -66556611 + MER1B DNA MER1_type 42 266 -73 1220 283 129 0 chr4 135771753 135772149 -66556198 - L2 LINE L2 -436 2878 2432 22 35 0 0 chr4 135772247 135772276 -66556071 + AT_rich Low_complexity Low_complexity 1 29 0 340 313 97 103 chr4 135772283 135772603 -66555744 - L2 LINE L2 0 3272 2955 301 337 31 0 chr4 135773097 135773195 -66555152 + polypyrimidine Low_complexity Low_complexity 5 105 0 395 312 176 40 chr4 135773229 135773627 -66554720 + L2 LINE L2 2858 3309 -4 185 218 13 0 chr4 135773762 135773840 -66554507 + (TA)n Simple_repeat Simple_repeat 1 79 0 448 230 104 15 chr4 135774192 135774327 -66554020 + MER5B DNA MER1_type 27 173 -5 22 35 0 0 chr4 135774709 135774738 -66553609 + AT_rich Low_complexity Low_complexity 1 29 0 316 297 45 9 chr4 135775622 135775733 -66552614 + MIR3 SINE MIR 62 176 -32 4791 75 20 0 chr4 135775755 135776395 -66551952 - L1PA10 LINE L1 0 6168 5516 226 240 100 30 chr4 135776524 135776624 -66551723 + MIR SINE MIR 154 260 -2 488 327 31 27 chr4 135778786 135778835 -66549512 + MIR SINE MIR 29 76 -186 5770 108 35 36 chr4 135778835 135780575 -66547772 - L1PA14 LINE L1 -3 6158 4397 488 327 31 27 chr4 135780575 135780748 -66547599 + MIR SINE MIR 76 252 -10 1627 199 75 61 chr4 135780820 135781248 -66547099 - MER77 LTR ERV1 -8 597 164 2400 257 53 24 chr4 135781278 135782446 -66545901 + L1M3a LINE L1 302 1449 -4516 1058 131 0 0 chr4 135782501 135782646 -66545701 + AluSc SINE Alu 7 151 -158 868 89 0 0 chr4 135782646 135782757 -66545590 + AluSg/x SINE Alu 189 299 -13 495 169 0 182 chr4 135782757 135782911 -66545436 + FLAM_C SINE Alu 1 126 -17 1136 239 110 6 chr4 135782930 135783285 -66545062 + L1M3a LINE L1 1473 1864 -4171 450 161 69 0 chr4 135783290 135783377 -66544970 - Tigger5 DNA MER2_type 0 2323 2231 308 250 14 0 chr4 135783424 135783496 -66544851 - Tigger5 DNA MER2_type 0 2323 2251 12080 189 81 32 chr4 135783613 135784056 -66544291 + L1MA7 LINE L1 2033 2453 -4074 7587 26 6 0 chr4 135784056 135785611 -66542736 + L1PA5 LINE L1 4593 6153 -1 12080 189 81 32 chr4 135785611 135788785 -66539562 + L1MA7 LINE L1 2453 5892 -635 2299 98 3 0 chr4 135788785 135789081 -66539266 + AluSx SINE Alu 1 297 -15 12080 189 81 32 chr4 135789081 135789745 -66538602 + L1MA7 LINE L1 5892 6522 -5 1546 174 99 22 chr4 135789809 135790171 -66538176 + L1MB4 LINE L1 5433 5822 -537 5708 171 27 11 chr4 135790187 135790909 -66537438 - L1PA16 LINE L1 -24 6142 5433 2690 92 0 11 chr4 135790909 135791268 -66537079 - THE1A LTR MaLR 0 355 1 5708 171 27 11 chr4 135791268 135792571 -66535776 - L1PA16 LINE L1 -733 5433 4081 1108 158 60 60 chr4 135792588 135792873 -66535474 + L1MB4 LINE L1 5896 6180 0 * 1288 204 229 5 chr4 135792870 135793315 -66535032 + L1MD2 LINE L1 5814 6358 -1 248 300 44 0 chr4 135793338 135793428 -66534919 - MIR SINE MIR -58 204 111 1482 52 6 0 chr4 135793791 135793964 -66534383 + AluY SINE Alu 1 174 -137 348 186 21 72 chr4 135794209 135794306 -66534041 - MER94 DNA DNA -40 94 3 2308 151 56 7 chr4 135795203 135795633 -66532714 + L1MB8 LINE L1 5724 6174 -4 2436 56 0 20 chr4 135795670 135795975 -66532372 + AluY SINE Alu 1 299 -12 568 82 0 0 chr4 135796066 135796139 -66532208 + AluSg/x SINE Alu 218 290 -19 243 26 0 53 chr4 135796801 135796839 -66531508 - MADE1 DNA Mariner 0 80 45 984 264 129 33 chr4 135797730 135798188 -66530159 - HAL1 LINE L1 -698 1809 1308 344 294 41 37 chr4 135798279 135798524 -66529823 - HAL1 LINE L1 -2206 301 56 345 254 173 27 chr4 135798661 135798846 -66529501 - L2 LINE L2 -88 3225 3014 2129 123 7 0 chr4 135799191 135799499 -66528848 - AluSg SINE Alu 0 310 1 207 0 0 0 chr4 135799522 135799545 -66528802 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 670 164 0 0 chr4 135799549 135799653 -66528694 - AluJo SINE Alu -30 282 179 881 161 0 7 chr4 135799653 135799796 -66528551 - AluJo SINE Alu -170 142 1 22 0 0 0 chr4 135800337 135800359 -66527988 + AT_rich Low_complexity Low_complexity 1 22 0 494 74 0 25 chr4 135800871 135800952 -66527395 + L1PB1 LINE L1 6071 6149 -2 28 0 0 0 chr4 135800982 135801010 -66527337 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 135801167 135801197 -66527150 + AT_rich Low_complexity Low_complexity 1 30 0 1097 146 108 9 chr4 135802394 135802606 -66525741 + MER46A DNA MER2_type 4 236 0 200 252 301 0 chr4 135802616 135802719 -66525628 - L2 LINE L2 0 3313 3180 320 240 70 20 chr4 135802985 135803085 -66525262 - MIR SINE MIR -21 241 137 587 202 30 84 chr4 135803259 135803378 -66524969 + L1MC4 LINE L1 7721 7826 -216 2385 83 3 0 chr4 135803378 135803680 -66524667 + AluY SINE Alu 1 303 -8 587 202 30 84 chr4 135803680 135803763 -66524584 + L1MC4 LINE L1 7826 7912 -130 1896 136 79 16 chr4 135803780 135803980 -66524367 - MLT1B LTR MaLR 0 390 204 2174 119 3 3 chr4 135803980 135804290 -66524057 - AluSx SINE Alu -2 310 1 1896 136 79 16 chr4 135804290 135804456 -66523891 - MLT1B LTR MaLR -186 204 1 1466 299 99 18 chr4 135804567 135805773 -66522574 - L1M4 LINE L1 -1925 4221 2918 2050 160 0 3 chr4 135805804 135806116 -66522231 - AluJb SINE Alu -1 311 1 22 88 0 0 chr4 135806843 135806900 -66521447 + AT_rich Low_complexity Low_complexity 1 57 0 26 30 0 0 chr4 135808176 135808209 -66520138 + AT_rich Low_complexity Low_complexity 1 33 0 1210 175 0 61 chr4 135809174 135809437 -66518910 + AluJo SINE Alu 48 294 -18 364 317 105 23 chr4 135809669 135809975 -66518372 + L1MEd LINE L1 512 842 -5277 357 287 121 38 chr4 135810018 135810318 -66518029 + L1MEd LINE L1 1003 1417 -1073 1713 175 70 3 chr4 135810482 135810797 -66517550 - MER1B DNA MER1_type -1 336 1 443 219 23 47 chr4 135811245 135811373 -66516974 + LTR25 LTR ERV1 232 356 -438 265 247 11 45 chr4 135811415 135811504 -66516843 + MER61E LTR ERV1 80 165 -404 876 155 65 6 chr4 135811553 135811721 -66516626 + MER61E LTR ERV1 341 518 -51 611 270 249 14 chr4 135811805 135812266 -66516081 + L1MEd LINE L1 2955 3306 -2823 2398 76 7 0 chr4 135812266 135812570 -66515777 - AluSp SINE Alu -7 306 1 611 270 249 14 chr4 135812570 135812844 -66515503 + L1MEd LINE L1 3306 3863 -2266 386 308 101 17 chr4 135812998 135813235 -66515112 + L1MEd LINE L1 4050 4306 -1823 628 229 114 31 chr4 135813255 135813482 -66514865 - MIR SINE MIR -4 258 13 1821 162 10 14 chr4 135818469 135818759 -66509588 - AluJo SINE Alu -23 289 1 27 0 0 0 chr4 135819377 135819404 -66508943 + AT_rich Low_complexity Low_complexity 1 27 0 276 244 183 0 chr4 135819890 135819972 -66508375 - MER58A DNA MER1_type -10 97 1 26 50 0 0 chr4 135820064 135820104 -66508243 + AT_rich Low_complexity Low_complexity 1 40 0 22 70 0 0 chr4 135820240 135820283 -66508064 + AT_rich Low_complexity Low_complexity 1 43 0 282 253 121 0 chr4 135820463 135820554 -66507793 + MER103 DNA DNA 55 156 -10 985 173 13 65 chr4 135820608 135820839 -66507508 + MER20 DNA MER1_type 1 219 0 2484 60 0 7 chr4 135821354 135821653 -66506694 + AluY SINE Alu 1 297 -14 254 388 8 16 chr4 135822605 135822726 -66505621 + L2 LINE L2 2302 2421 -893 1166 148 72 94 chr4 135822775 135822832 -66505515 - MER33 DNA MER1_type -2261 324 267 1713 130 93 4 chr4 135822832 135823102 -66505245 + AluJb SINE Alu 1 294 -18 1166 148 72 94 chr4 135823102 135823253 -66505094 - MER33 DNA MER1_type -2318 267 123 1216 87 33 16 chr4 135823253 135823436 -66504911 + MER30B DNA MER1_type 1 186 -4 1166 148 72 94 chr4 135823436 135823557 -66504790 - MER33 DNA MER1_type -2462 123 1 371 308 71 22 chr4 135823818 135824000 -66504347 + L2 LINE L2 3123 3313 0 608 195 157 32 chr4 135824428 135824613 -66503734 + MER3 DNA MER1_type 2 209 0 1142 261 91 43 chr4 135824636 135825165 -66503182 - L2 LINE L2 -95 3218 2665 598 238 122 0 chr4 135825552 135825724 -66502623 - MIR SINE MIR -13 249 57 207 0 0 0 chr4 135826249 135826272 -66502075 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 27 0 0 0 chr4 135826312 135826339 -66502008 + AT_rich Low_complexity Low_complexity 1 27 0 805 186 91 32 chr4 135827190 135827410 -66500937 - MER46A DNA MER2_type 0 236 4 2127 208 27 46 chr4 135828368 135828995 -66499352 + L1MB7 LINE L1 5572 6174 -10 21 36 0 0 chr4 135829573 135829601 -66498746 + AT_rich Low_complexity Low_complexity 1 28 0 2241 76 0 0 chr4 135829620 135829896 -66498451 - AluY SINE Alu -12 299 24 207 184 0 0 chr4 135830122 135830160 -66498187 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 237 265 255 0 chr4 135830473 135830571 -66497776 + L2 LINE L2 3191 3313 0 667 244 135 22 chr4 135831380 135831609 -66496738 - MIR SINE MIR 0 262 8 406 255 98 0 chr4 135831778 135831880 -66496467 + L2 LINE L2 3197 3308 -5 1476 156 36 81 chr4 135832194 135832501 -66495846 + AluJo SINE Alu 1 293 -19 237 65 0 0 chr4 135832512 135832543 -66495804 + (TATG)n Simple_repeat Simple_repeat 2 32 0 298 215 87 0 chr4 135832759 135832862 -66495485 - L1ME LINE L1 -346 5820 5710 616 157 0 28 chr4 135833349 135833457 -66494890 + FRAM SINE Alu 49 153 -23 357 24 0 0 chr4 135833477 135833519 -66494828 + (TG)n Simple_repeat Simple_repeat 2 43 0 838 267 69 9 chr4 135833965 135834197 -66494150 + MIR SINE MIR 17 262 0 204 75 38 38 chr4 135835119 135835172 -66493175 + T-rich Low_complexity Low_complexity 2 54 0 21 36 0 0 chr4 135835543 135835571 -66492776 + AT_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr4 135836168 135836214 -66492133 + AT_rich Low_complexity Low_complexity 1 46 0 2183 112 0 0 chr4 135836336 135836621 -66491726 + AluSx SINE Alu 1 285 -27 306 0 0 0 chr4 135836621 135836655 -66491692 + (CA)n Simple_repeat Simple_repeat 2 35 0 22 35 0 0 chr4 135837969 135837998 -66490349 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 135838213 135838241 -66490106 + AT_rich Low_complexity Low_complexity 1 28 0 423 301 118 15 chr4 135838279 135838541 -66489806 - L1ME LINE L1 -335 5786 5498 594 224 92 53 chr4 135839426 135839654 -66488693 + L1MC4 LINE L1 7805 8041 -1 978 150 142 51 chr4 135840354 135840607 -66487740 - MER2 DNA MER2_type 0 345 70 421 148 0 0 chr4 135840613 135840674 -66487673 + FLAM SINE Alu 56 116 -27 1138 139 0 12 chr4 135840802 135840968 -66487379 + AluSg/x SINE Alu 128 291 -21 732 154 19 1 chr4 135842385 135842507 -66485840 - MLT1C LTR MaLR 0 467 251 1816 170 3 3 chr4 135842512 135842801 -66485546 + AluJo SINE Alu 3 291 -21 218 275 31 131 chr4 135843172 135843332 -66485015 + MIR SINE MIR 26 169 -93 2589 56 0 0 chr4 135844161 135844466 -66483881 + AluY SINE Alu 1 305 -6 236 53 26 0 chr4 135844673 135844711 -66483636 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr4 135844727 135844748 -66483599 + AT_rich Low_complexity Low_complexity 1 21 0 2102 113 7 7 chr4 135845676 135845977 -66482370 - AluY SINE Alu -10 301 1 2249 105 3 0 chr4 135846602 135846898 -66481449 - AluSg SINE Alu -13 297 1 378 208 287 0 chr4 135847439 135847540 -66480807 + FLAM_A SINE Alu 2 131 -2 412 312 56 71 chr4 135847670 135848152 -66480195 - L2 LINE L2 0 3272 2786 197 279 211 29 chr4 135848183 135848287 -66480060 - L2 LINE L2 -5 3308 3186 1754 213 157 25 chr4 135848382 135848993 -66479354 + HsTC2a DNA Tc2 5 696 -48 1976 97 0 8 chr4 135849103 135849361 -66478986 - AluSg SINE Alu -18 292 37 1297 50 0 0 chr4 135849881 135850042 -66478305 - L1PA7 LINE L1 0 6154 5994 1186 108 70 24 chr4 135850714 135850927 -66477420 + L1PA13 LINE L1 5941 6163 0 3045 176 64 60 chr4 135851512 135852273 -66476074 - L1MB8 LINE L1 0 6178 5415 22 0 0 0 chr4 135852977 135852999 -66475348 + AT_rich Low_complexity Low_complexity 1 22 0 391 287 96 37 chr4 135853552 135853740 -66474607 - MIR SINE MIR -59 203 5 334 383 85 0 chr4 135853757 135853945 -66474402 - MIR SINE MIR -14 248 45 384 105 105 0 chr4 135853976 135854052 -66474295 - L1MB8 LINE L1 0 6178 6095 3011 183 93 20 chr4 135854068 135854763 -66473584 - L1MB4 LINE L1 -26 6154 5409 1766 188 0 0 chr4 135855178 135855476 -66472871 - AluJb SINE Alu -8 304 7 3627 129 32 20 chr4 135855751 135856411 -66471936 - L1MA8 LINE L1 -4 6287 5620 2410 70 0 13 chr4 135856888 135857186 -66471161 + AluY SINE Alu 1 294 -17 442 220 265 0 chr4 135857252 135857384 -66470963 - MER5A DNA MER1_type -14 175 9 278 264 11 22 chr4 135857647 135857738 -66470609 + AluSp SINE Alu 108 197 -106 1667 171 38 3 chr4 135858008 135858295 -66470052 + AluJo SINE Alu 1 297 -15 688 191 68 45 chr4 135858357 135858586 -66469761 + L1MD3 LINE L1 7527 7992 -3 754 246 66 9 chr4 135859906 135860117 -66468230 - MER58A DNA MER1_type 0 224 2 450 356 124 4 chr4 135860220 135860445 -66467902 - MIR SINE MIR -3 259 8 1297 267 224 14 chr4 135860790 135861657 -66466690 - L2 LINE L2 -14 3299 2244 335 287 23 0 chr4 135861692 135861779 -66466568 - L2 LINE L2 -1214 2100 2012 22 35 0 0 chr4 135862798 135862827 -66465520 + AT_rich Low_complexity Low_complexity 1 29 0 2017 143 3 10 chr4 135863101 135863408 -66464939 + AluJo SINE Alu 1 305 -7 367 271 130 68 chr4 135863408 135863700 -66464647 + L1ME4a LINE L1 5732 6041 -80 21 57 0 0 chr4 135866393 135866428 -66461919 + AT_rich Low_complexity Low_complexity 1 35 0 2222 100 0 3 chr4 135867304 135867603 -66460744 + AluSx SINE Alu 1 298 -14 1897 153 11 0 chr4 135867686 135867968 -66460379 + AluJb SINE Alu 1 285 -27 2431 66 0 0 chr4 135867978 135868279 -66460068 + AluY SINE Alu 9 309 -2 1940 137 3 33 chr4 135868827 135869134 -66459213 - AluSx SINE Alu -14 298 1 1930 120 33 23 chr4 135869687 135869987 -66458360 - AluSx SINE Alu -9 303 1 1604 90 0 5 chr4 135871189 135871400 -66456947 + AluSx SINE Alu 1 210 -102 1341 99 21 21 chr4 135871401 135871593 -66456754 + AluSc SINE Alu 102 293 -16 1991 96 0 15 chr4 135871853 135872123 -66456224 + AluSx SINE Alu 35 300 -12 272 105 0 0 chr4 135873616 135873654 -66454693 + Alu SINE Alu 5 42 -261 1463 75 0 40 chr4 135873656 135873857 -66454490 + AluSg SINE Alu 5 197 -113 180 0 0 0 chr4 135873857 135873877 -66454470 + (A)n Simple_repeat Simple_repeat 1 20 0 966 129 20 7 chr4 135874163 135874310 -66454037 + AluJb SINE Alu 1 149 -163 994 131 24 63 chr4 135874541 135874747 -66453600 + L1MA4A LINE L1 6086 6283 -20 21 0 0 0 chr4 135874758 135874779 -66453568 + AT_rich Low_complexity Low_complexity 1 21 0 205 182 0 0 chr4 135874963 135874996 -66453351 + (TATG)n Simple_repeat Simple_repeat 4 36 0 201 273 250 0 chr4 135875019 135875107 -66453240 + L2 LINE L2 3203 3312 -1 4141 233 27 78 chr4 135875284 135876894 -66451453 + L1PA15-16 LINE L1 36 1260 -5589 2230 215 121 23 chr4 135876905 135877565 -66450782 - MER50 LTR ERV1 0 734 10 11380 198 45 64 chr4 135877581 135878508 -66449839 + L1PB4 LINE L1 909 1852 -5007 207 0 0 0 chr4 135878508 135878531 -66449816 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 11380 198 45 64 chr4 135878531 135878621 -66449726 + L1PB4 LINE L1 1852 1942 -4917 354 86 0 17 chr4 135878621 135878679 -66449668 + Alu SINE Alu 246 302 0 11380 198 45 64 chr4 135878679 135880102 -66448245 + L1PB4 LINE L1 1942 3391 -3468 207 0 0 0 chr4 135880102 135880125 -66448222 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 11380 198 45 64 chr4 135880125 135880182 -66448165 + L1PB4 LINE L1 3391 3448 -3411 2080 117 7 17 chr4 135880182 135880481 -66447866 + AluSq SINE Alu 3 298 -15 11380 198 45 64 chr4 135880481 135881104 -66447243 + L1PB4 LINE L1 3448 4081 -2778 1818 157 0 39 chr4 135881104 135881416 -66446931 + AluJb SINE Alu 1 300 -12 11380 198 45 64 chr4 135881416 135883140 -66445207 + L1PB4 LINE L1 4081 5837 -1022 2111 121 0 10 chr4 135883140 135883447 -66444900 - AluSq SINE Alu -9 304 1 11380 198 45 64 chr4 135883447 135884442 -66443905 + L1PB4 LINE L1 5837 6746 -113 1830 226 43 70 chr4 135884442 135885071 -66443276 + LTR9 LTR ERV1 1 612 0 11380 198 45 64 chr4 135885071 135885183 -66443164 + L1PB4 LINE L1 6746 6859 0 1697 187 0 7 chr4 135885193 135885476 -66442871 - AluJb SINE Alu -31 281 1 48 18 0 0 chr4 135885476 135885531 -66442816 + AT_rich Low_complexity Low_complexity 1 55 0 513 286 65 35 chr4 135885561 135886019 -66442328 + L1M4 LINE L1 3455 3926 -2220 923 262 102 16 chr4 135886049 135886354 -66441993 + L2 LINE L2 2570 2900 -414 2106 103 34 0 chr4 135886369 135886661 -66441686 + AluY SINE Alu 1 302 -9 445 96 22 176 chr4 135986849 135986985 -66341362 + L1MB8 LINE L1 6058 6172 -6 2050 126 13 13 chr4 135986995 135987305 -66341042 - AluSx SINE Alu -2 310 1 2139 115 0 11 chr4 135987379 135987665 -66340682 - AluSx SINE Alu -21 291 9 237 261 0 29 chr4 135988239 135988308 -66340039 + MIR SINE MIR 124 190 -72 1738 163 0 63 chr4 135988416 135988565 -66339782 + AluJb SINE Alu 3 123 -189 2209 104 7 0 chr4 135988565 135988864 -66339483 + AluSq SINE Alu 1 301 -12 1738 163 0 63 chr4 135988864 135989033 -66339314 + AluJb SINE Alu 123 301 -11 216 276 98 81 chr4 135989429 135989552 -66338795 + L2 LINE L2 3189 3313 0 2371 93 0 3 chr4 135989719 135990020 -66338327 - AluSg SINE Alu -10 300 1 321 169 0 0 chr4 135990230 135990289 -66338058 - AluS SINE Alu -241 59 1 2555 166 52 27 chr4 135990823 135990841 -66337506 + L1M3 LINE L1 5116 5132 -1051 1970 146 3 0 chr4 135990841 135991135 -66337212 + AluSx SINE Alu 1 295 -17 2555 166 52 27 chr4 135991135 135991776 -66336571 + L1M3 LINE L1 5132 5783 -400 1928 119 0 4 chr4 135991789 135992066 -66336281 + AluSg1 SINE Alu 24 299 -10 401 210 0 12 chr4 135992138 135992219 -66336128 + MER34B LTR ERV1 46 125 -440 1980 101 36 4 chr4 135992343 135992621 -66335726 + AluY SINE Alu 1 287 -24 37 23 0 0 chr4 135992623 135992667 -66335680 + AT_rich Low_complexity Low_complexity 1 44 0 2266 63 0 0 chr4 135994072 135994393 -66333954 + AluY SINE Alu 15 335 0 23 33 0 0 chr4 135994915 135994945 -66333402 + AT_rich Low_complexity Low_complexity 1 30 0 405 122 71 61 chr4 135995214 135995312 -66333035 + MER53 DNA DNA 91 189 0 327 253 13 13 chr4 135995314 135995389 -66332958 - MER5A DNA MER1_type -104 85 11 855 165 128 16 chr4 135995407 135995595 -66332752 - MER3 DNA MER1_type 0 209 1 35 24 0 0 chr4 135995666 135995708 -66332639 + AT_rich Low_complexity Low_complexity 1 42 0 2024 71 74 25 chr4 135996425 135996708 -66331639 + AluSc SINE Alu 1 297 -12 1684 137 19 15 chr4 135997016 135997286 -66331061 - AluSx SINE Alu -2 310 40 234 167 0 0 chr4 135997336 135997372 -66330975 - AluSx SINE Alu -267 36 1 1911 159 7 3 chr4 135997738 135998039 -66330308 + AluJb SINE Alu 1 302 -10 27 29 0 0 chr4 135998068 135998102 -66330245 + AT_rich Low_complexity Low_complexity 1 34 0 337 306 47 47 chr4 135998854 135999024 -66329323 - L1ME4a LINE L1 -112 6009 5840 293 109 0 0 chr4 135999106 135999161 -66329186 - L1MB4 LINE L1 0 6180 6126 534 240 34 7 chr4 135999295 135999441 -66328906 + AluSg/x SINE Alu 159 308 -2 2395 122 3 21 chr4 135999477 135999863 -66328484 + Tigger3(Golem) DNA MER2_type 2647 3025 -4 339 216 72 18 chr4 135999872 135999983 -66328364 + L1MC5 LINE L1 7785 7901 -60 315 291 37 0 chr4 136000014 136000227 -66328120 + L1MB2 LINE L1 2869 3089 -3057 1934 146 19 16 chr4 136000227 136000590 -66327757 + L1MB4 LINE L1 5711 6074 -106 1909 129 53 6 chr4 136000592 136001103 -66327244 + LTR43 LTR ERV1 1 576 -26 644 204 8 23 chr4 136001104 136001236 -66327111 + AluJo SINE Alu 85 214 -98 370 297 58 0 chr4 136001237 136001375 -66326972 + L1MC5 LINE L1 7768 7913 -48 2460 38 3 0 chr4 136001423 136001737 -66326610 + AluY SINE Alu 1 311 0 348 249 56 52 chr4 136001745 136001978 -66326369 + L1MB2 LINE L1 4999 5232 -914 233 316 0 0 chr4 136001979 136002036 -66326311 + MIR SINE MIR 206 262 0 23 54 0 0 chr4 136002664 136002701 -66325646 + AT_rich Low_complexity Low_complexity 1 37 0 386 265 33 59 chr4 136002701 136002777 -66325570 + L1MB2 LINE L1 5197 5273 -933 2156 93 3 19 chr4 136002777 136003088 -66325259 - AluY SINE Alu -5 306 1 386 265 33 59 chr4 136003088 136003241 -66325106 + L1MB2 LINE L1 5273 5427 -779 263 207 171 0 chr4 136003241 136003330 -66325017 - AluJ/FLAM SINE Alu -214 88 1 608 268 145 5 chr4 136003340 136003657 -66324690 + L1MB2 LINE L1 5456 5812 -358 2308 70 20 3 chr4 136004024 136004323 -66324024 + AluY SINE Alu 1 304 -7 2353 87 3 0 chr4 136004339 136004638 -66323709 + AluSp SINE Alu 3 302 -11 359 198 66 28 chr4 136004753 136004859 -66323488 + MER34 LTR ERV1 431 540 -2 1432 164 108 0 chr4 136004861 136005203 -66323144 + L1MB2 LINE L1 5785 6163 -8 1343 292 49 45 chr4 136006644 136007561 -66320786 + L1MC4 LINE L1 7122 8042 0 272 311 67 22 chr4 136007901 136008036 -66320311 + L3 LINE CR1 628 768 -809 2127 101 18 3 chr4 136008048 136008334 -66320013 + AluSq SINE Alu 1 290 -23 1121 174 100 17 chr4 136008540 136008839 -66319508 + MER58D DNA MER1_type 63 386 0 2628 26 0 22 chr4 136009335 136009647 -66318700 + AluY SINE Alu 1 305 -6 1819 119 4 4 chr4 136010018 136010278 -66318069 + AluSx SINE Alu 31 290 -22 327 94 0 0 chr4 136010435 136010488 -66317859 + Alu SINE Alu 239 291 -11 4213 118 99 109 chr4 136011187 136012606 -66315741 - pTR5 LTR ERV1 0 2438 743 341 313 106 90 chr4 136013295 136013662 -66314685 - L1M2 LINE L1 -5731 1118 746 256 317 128 14 chr4 136014076 136014224 -66314123 - MIR SINE MIR -60 202 40 1266 99 0 112 chr4 136014383 136014625 -66313722 + AluY SINE Alu 3 217 -94 305 198 129 35 chr4 136015154 136015270 -66313077 + MER94 DNA DNA 5 131 -3 353 287 69 43 chr4 136015642 136015830 -66312517 + L2 LINE L2 1810 2002 -1312 1895 133 67 3 chr4 136015834 136016150 -66312197 - MSTC LTR MaLR 0 428 93 1475 139 7 40 chr4 136016170 136016443 -66311904 - MER50 LTR ERV1 -38 696 433 1107 172 40 9 chr4 136016441 136016668 -66311679 - MER50 LTR ERV1 -500 234 1 * 304 202 20 81 chr4 136016671 136016770 -66311577 - MSTC LTR MaLR -303 93 1 193 356 23 0 chr4 136016776 136016863 -66311484 + L2 LINE L2 2013 2101 -1213 324 0 0 0 chr4 136016904 136016940 -66311407 + (TG)n Simple_repeat Simple_repeat 2 37 0 208 234 63 165 chr4 136017042 136017200 -66311147 + L2 LINE L2 2910 3051 -221 1889 126 11 0 chr4 136017209 136017479 -66310868 - AluSx SINE Alu -13 299 27 1399 149 14 0 chr4 136017479 136017693 -66310654 - AluSq SINE Alu -96 217 1 2121 131 3 10 chr4 136017858 136018170 -66310177 - AluSx SINE Alu -2 310 1 1750 162 7 26 chr4 136018577 136018885 -66309462 + AluJo SINE Alu 1 302 -10 1958 117 0 28 chr4 136019180 136019510 -66308837 + AluSq SINE Alu 3 324 0 899 215 0 0 chr4 136019622 136019780 -66308567 - FAM SINE Alu -17 158 1 1682 150 3 97 chr4 136019811 136020151 -66308196 + AluJb SINE Alu 1 308 -4 784 150 16 8 chr4 136021286 136021413 -66306934 + FLAM_A SINE Alu 2 129 -4 2253 108 0 3 chr4 136021571 136021867 -66306480 - AluSg SINE Alu -15 295 1 1724 129 103 4 chr4 136022120 136022391 -66305956 - AluSq SINE Alu -15 298 1 377 293 28 0 chr4 136022906 136023012 -66305335 - MIR SINE MIR -69 193 85 2205 110 3 0 chr4 136023042 136023332 -66305015 + AluSq SINE Alu 1 291 -22 331 336 27 9 chr4 136023664 136023774 -66304573 + L2 LINE L2 3149 3260 -12 323 213 53 0 chr4 136023888 136023963 -66304384 - MIR SINE MIR -7 255 177 246 156 0 0 chr4 136024242 136024287 -66304060 + (TA)n Simple_repeat Simple_repeat 2 46 0 689 182 24 53 chr4 136024473 136024643 -66303704 - MER106B DNA MER1_type 0 1059 895 1303 219 77 4 chr4 136025171 136025445 -66302902 - AluSx SINE Alu -3 309 16 27 62 0 0 chr4 136025596 136025644 -66302703 + AT_rich Low_complexity Low_complexity 1 48 0 2456 90 0 13 chr4 136025816 136026128 -66302219 - AluSx SINE Alu -4 308 1 2167 139 7 0 chr4 136026333 136026643 -66301704 - AluSx SINE Alu 0 312 1 1133 195 0 56 chr4 136026750 136026981 -66301366 - AluJo SINE Alu -8 304 87 719 154 83 6 chr4 136026981 136027137 -66301210 - L1MA4 LINE L1 -326 5974 5807 546 143 0 0 chr4 136027158 136027249 -66301098 + (TCCC)n Simple_repeat Simple_repeat 1 91 0 974 176 18 0 chr4 136027270 136027435 -66300912 - AluJb SINE Alu -5 307 140 599 191 77 29 chr4 136027438 136027684 -66300663 - L1MC5 LINE L1 -202 7759 7502 1964 122 0 27 chr4 136027774 136028068 -66300279 + AluSx SINE Alu 1 286 -26 226 88 73 0 chr4 136028068 136028136 -66300211 + (TA)n Simple_repeat Simple_repeat 1 73 0 436 238 47 12 chr4 136028150 136028348 -66299999 - L1MC5 LINE L1 -547 7495 7260 1032 227 97 45 chr4 136028393 136028594 -66299753 - L1MC4 LINE L1 -735 7226 7037 2217 104 0 13 chr4 136028594 136028901 -66299446 - AluSx SINE Alu -1 311 9 1032 227 97 45 chr4 136028901 136029238 -66299109 - L1MC4 LINE L1 -924 7037 6703 1858 121 60 0 chr4 136029245 136029526 -66298821 - AluSx SINE Alu -14 298 1 441 321 152 14 chr4 136029901 136030197 -66298150 + MLT1K LTR MaLR 139 475 -113 634 342 37 73 chr4 136030226 136030729 -66297618 + L2 LINE L2 2779 3266 -6 503 250 135 26 chr4 136031652 136031808 -66296539 + MIR SINE MIR 90 262 0 941 129 0 29 chr4 136032153 136032292 -66296055 - AluJo SINE Alu -177 135 1 440 284 90 13 chr4 136034050 136034205 -66294142 - MIR SINE MIR -6 256 90 1559 185 82 100 chr4 136035042 136035294 -66293053 + L1MC5 LINE L1 6708 6963 -998 1937 162 0 3 chr4 136035294 136035591 -66292756 + AluJo SINE Alu 1 296 -16 1559 185 82 100 chr4 136035591 136036007 -66292340 + L1MC5 LINE L1 6963 7364 -597 * 5939 81 9 50 chr4 136035990 136036486 -66291861 - L1P LINE L1 -1907 4239 3801 2224 92 3 7 chr4 136036486 136036832 -66291515 - AluY SINE Alu 0 311 1 5939 81 9 50 chr4 136036832 136037305 -66291042 - L1P LINE L1 -2345 3801 3310 8232 77 19 0 chr4 136037305 136039180 -66289167 + L1PA7 LINE L1 4252 6143 -11 523 148 0 11 chr4 136039181 136039269 -66289078 + AluS SINE Alu 1 87 -225 443 274 70 60 chr4 136039296 136039511 -66288836 + L2 LINE L2 3002 3218 -95 1879 176 2 128 chr4 136039734 136040128 -66288219 + MER47B DNA MER2_type 1 326 -1997 1956 143 36 0 chr4 136040128 136040429 -66287918 - AluSq SINE Alu -1 312 1 1879 176 2 128 chr4 136040429 136040512 -66287835 + MER47B DNA MER2_type 326 418 0 1525 157 0 121 chr4 136040647 136040979 -66287368 - AluJo SINE Alu -10 292 1 1019 146 61 18 chr4 136040983 136041183 -66287164 - AluSx SINE Alu 0 319 113 1040 118 0 0 chr4 136041237 136041372 -66286975 - AluSx SINE Alu -178 135 1 3476 131 30 11 chr4 136041395 136041993 -66286354 + L1MA4 LINE L1 5336 5948 -352 2285 93 3 16 chr4 136041993 136042306 -66286041 + AluSc SINE Alu 1 309 0 3476 131 30 11 chr4 136042306 136042334 -66286013 + L1MA4 LINE L1 5948 5974 -326 1144 183 0 62 chr4 136042334 136042574 -66285773 + AluJo SINE Alu 87 311 -1 1529 193 21 0 chr4 136042577 136042908 -66285439 + L1MA4 LINE L1 5959 6296 -4 1714 149 35 24 chr4 136042915 136043204 -66285143 + AluJo SINE Alu 2 293 -19 24 32 0 0 chr4 136043776 136043807 -66284540 + AT_rich Low_complexity Low_complexity 1 31 0 894 146 0 0 chr4 136044573 136044703 -66283644 + FLAM_C SINE Alu 1 130 -3 1595 204 3 7 chr4 136044707 136045006 -66283341 + AluJo SINE Alu 1 298 -14 2156 117 10 0 chr4 136045266 136045566 -66282781 + AluSp SINE Alu 10 312 -1 2294 38 42 3 chr4 136046528 136046816 -66281531 - AluY SINE Alu -12 299 1 24 53 0 0 chr4 136046953 136046991 -66281356 + AT_rich Low_complexity Low_complexity 1 38 0 251 231 0 0 chr4 136047052 136047104 -66281243 - L1MD2 LINE L1 -157 6202 6151 221 155 100 23 chr4 136047162 136047220 -66281127 + MIR SINE MIR 39 111 -97 611 266 71 22 chr4 136047357 136047541 -66280806 + MIR SINE MIR 8 200 -62 1829 113 0 83 chr4 136047848 136048175 -66280172 - AluY SINE Alu -7 304 5 25 0 0 0 chr4 136048324 136048349 -66279998 + AT_rich Low_complexity Low_complexity 1 25 0 2115 97 4 4 chr4 136048616 136048894 -66279453 + AluSq SINE Alu 23 300 -13 546 256 0 0 chr4 136048894 136049023 -66279324 - MER3 DNA MER1_type -80 129 1 679 164 41 0 chr4 136049064 136049186 -66279161 - MLT1A2 LTR MaLR -3 371 245 239 244 8 122 chr4 136049932 136050055 -66278292 - MER102a DNA MER1_type 0 330 222 324 277 21 0 chr4 136050223 136050317 -66278030 + L1MC4 LINE L1 6608 6703 -1339 212 253 13 0 chr4 136050317 136050392 -66277955 + (TA)n Simple_repeat Simple_repeat 2 77 0 2252 78 0 62 chr4 136050502 136050810 -66277537 - AluSp SINE Alu -24 289 1 26 30 0 0 chr4 136051278 136051311 -66277036 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr4 136051753 136051777 -66276570 + AT_rich Low_complexity Low_complexity 1 24 0 1271 116 0 0 chr4 136051781 136051945 -66276402 + AluSq SINE Alu 1 164 -149 337 200 0 17 chr4 136052060 136052120 -66276227 + AluSc SINE Alu 194 252 -47 1141 171 4 31 chr4 136052120 136052348 -66275999 + AluJo SINE Alu 88 309 -3 1621 243 33 91 chr4 136052520 136053039 -66275308 - MLT1E LTR MaLR -104 489 1 1740 177 0 7 chr4 136053227 136053526 -66274821 + AluJb SINE Alu 6 302 -10 1097 98 0 14 chr4 136053832 136053975 -66274372 + AluSq/x SINE Alu 1 141 -172 243 28 0 0 chr4 136053975 136054011 -66274336 + Alu SINE Alu 273 308 0 1718 242 136 38 chr4 136054020 136054677 -66273670 + MER21B LTR ERV1 18 738 -125 2347 82 13 0 chr4 136054750 136055055 -66273292 + AluY SINE Alu 1 309 -2 997 160 0 37 chr4 136055265 136055453 -66272894 - AluJb SINE Alu -12 300 120 1181 106 0 0 chr4 136055639 136055800 -66272547 - AluSg/x SINE Alu -16 296 136 2365 94 0 7 chr4 136055803 136056112 -66272235 - AluSg SINE Alu -3 307 1 2175 94 7 3 chr4 136056212 136056498 -66271849 - AluSp SINE Alu -26 287 1 31 44 0 0 chr4 136056811 136056856 -66271491 + AT_rich Low_complexity Low_complexity 1 45 0 1861 100 4 4 chr4 136057365 136057616 -66270731 - AluSx SINE Alu -15 297 47 2463 81 3 3 chr4 136058000 136058308 -66270039 + AluSp SINE Alu 1 308 -5 1042 193 0 0 chr4 136058351 136058522 -66269825 - FAM SINE Alu -1 174 4 358 284 129 9 chr4 136058546 136058695 -66269652 - L1ME4a LINE L1 -1 6120 5934 2446 81 3 0 chr4 136058695 136059004 -66269343 + AluSg SINE Alu 1 310 0 358 284 129 9 chr4 136059004 136059079 -66269268 - L1ME4a LINE L1 -187 5934 5869 2406 80 0 3 chr4 136059116 136059428 -66268919 + AluY SINE Alu 1 311 0 371 316 149 32 chr4 136059449 136059791 -66268556 - L2 LINE L2 -470 2844 2463 818 165 0 0 chr4 136059810 136059925 -66268422 + FLAM_A SINE Alu 1 115 -18 824 131 0 92 chr4 136060056 136060209 -66268138 + FLAM_C SINE Alu 1 139 -4 4427 111 33 94 chr4 136060230 136060430 -66267917 + MER4E LTR ERV1 1 212 -567 1823 154 0 7 chr4 136060430 136060778 -66267569 - AluSx SINE Alu 0 312 1 4427 111 33 94 chr4 136060778 136061091 -66267256 + MER4E LTR ERV1 212 448 -331 2129 117 20 0 chr4 136061091 136061391 -66266956 - AluSq SINE Alu -7 306 1 4427 111 33 94 chr4 136061391 136061696 -66266651 + MER4E LTR ERV1 448 770 -9 1027 171 0 0 chr4 136061716 136061874 -66266473 + AluJb SINE Alu 152 309 -3 2137 117 0 23 chr4 136061908 136062217 -66266130 + AluSg SINE Alu 1 302 -8 2335 104 0 3 chr4 136062263 136062571 -66265776 + AluSg SINE Alu 1 307 -3 195 42 0 0 chr4 136062599 136062623 -66265724 + (A)n Simple_repeat Simple_repeat 1 24 0 685 238 122 28 chr4 136062639 136062853 -66265494 + L1ME3A LINE L1 5551 5784 -386 2029 179 28 45 chr4 136062859 136063409 -66264938 + MLT2A2 LTR ERVL 1 554 0 538 205 39 83 chr4 136063411 136063616 -66264731 + L1ME3A LINE L1 5789 5984 -186 2371 78 3 0 chr4 136063617 136063912 -66264435 + AluSg1 SINE Alu 1 296 -13 330 314 80 0 chr4 136064016 136064153 -66264194 + L2 LINE L2 1838 1985 -1329 852 202 32 119 chr4 136064179 136064336 -66264011 - MIR SINE MIR -31 231 103 2288 88 0 52 chr4 136064336 136064665 -66263682 + AluSx SINE Alu 1 312 0 852 202 32 119 chr4 136064665 136064759 -66263588 - MIR SINE MIR -159 103 2 2346 59 24 3 chr4 136064829 136065118 -66263229 + AluSp SINE Alu 2 296 -17 1298 170 14 65 chr4 136065533 136065699 -66262648 - AluJb SINE Alu -13 299 151 2299 98 0 17 chr4 136065699 136065995 -66262352 - AluSc SINE Alu -18 291 1 1298 170 14 65 chr4 136065995 136066104 -66262243 - AluJb SINE Alu -161 151 38 1376 229 90 9 chr4 136066147 136066570 -66261777 - L1ME3A LINE L1 -220 5950 5494 2072 120 13 3 chr4 136066798 136067097 -66261250 + AluSx SINE Alu 1 302 -10 794 220 6 11 chr4 136067099 136067276 -66261071 + Charlie1 DNA MER1_type 1807 1982 -779 2403 76 0 10 chr4 136067389 136067691 -66260656 + AluSx SINE Alu 1 299 -13 573 286 0 47 chr4 136067756 136067927 -66260420 + MER5B DNA MER1_type 1 163 -15 2279 107 0 3 chr4 136067927 136068225 -66260122 + AluSq SINE Alu 1 297 -16 2496 146 46 34 chr4 136068261 136068642 -66259705 - Cheshire DNA MER1_type 0 2420 2045 2232 113 0 3 chr4 136068642 136068944 -66259403 - AluSx SINE Alu -11 301 1 2644 56 0 0 chr4 136068950 136069255 -66259092 - AluY SINE Alu -6 305 1 2496 146 46 34 chr4 136069255 136069340 -66259007 - Cheshire DNA MER1_type -379 2041 1941 837 218 6 0 chr4 136069368 136069524 -66258823 - Cheshire DNA MER1_type -2112 308 152 1430 165 99 7 chr4 136069525 136069797 -66258550 + AluSx SINE Alu 2 298 -14 4188 142 40 39 chr4 136069838 136071218 -66257129 - pTR5 LTR ERV1 0 2438 737 2303 91 0 28 chr4 136071219 136071539 -66256808 - AluY SINE Alu 0 311 1 286 235 62 0 chr4 136071541 136071622 -66256725 - Cheshire DNA MER1_type -2300 120 35 567 153 12 0 chr4 136071726 136071811 -66256536 - AluJ/FLAM SINE Alu -225 87 2 2361 79 0 29 chr4 136071846 136072161 -66256186 + AluSq SINE Alu 1 306 -7 2308 154 32 47 chr4 136072274 136072747 -66255600 - L1MB3 LINE L1 0 6183 5718 1935 146 29 0 chr4 136072948 136073259 -66255088 - AluSx SINE Alu 0 319 1 1135 192 101 68 chr4 136073355 136073720 -66254627 + MER58D DNA MER1_type 1 377 -9 2390 81 0 0 chr4 136073901 136074196 -66254151 + AluY SINE Alu 1 295 -16 2374 98 3 0 chr4 136074332 136074637 -66253710 + AluSp SINE Alu 1 306 -7 247 65 0 65 chr4 136075351 136075397 -66252950 - L1MA1 LINE L1 0 6305 6261 540 244 194 0 chr4 136075742 136075922 -66252425 - MIR SINE MIR -43 219 5 506 174 0 22 chr4 136075936 136076028 -66252319 - Tigger5 DNA MER2_type 0 2323 2234 311 139 0 0 chr4 136076035 136076078 -66252269 - Tigger5 DNA MER2_type -2268 55 13 239 246 18 18 chr4 136076079 136076136 -66252211 - Tigger5 DNA MER2_type -1 2322 2266 2284 101 0 0 chr4 136076414 136076712 -66251635 + AluY SINE Alu 1 298 -13 2309 116 0 0 chr4 136076774 136077076 -66251271 + AluSx SINE Alu 1 302 -10 2064 200 56 0 chr4 136077196 136077571 -66250776 + MSTD LTR MaLR 1 396 0 2130 124 0 7 chr4 136077682 136077988 -66250359 + AluSx SINE Alu 1 304 -8 22 56 0 0 chr4 136078067 136078103 -66250244 + AT_rich Low_complexity Low_complexity 1 36 0 278 208 0 19 chr4 136078282 136078335 -66250012 + Tigger5 DNA MER2_type 4 55 -2268 527 160 11 11 chr4 136078339 136078433 -66249914 + Tigger5 DNA MER2_type 2230 2323 0 415 295 50 25 chr4 136078497 136078697 -66249650 + L2 LINE L2 3104 3308 -5 598 234 99 50 chr4 136079549 136079771 -66248576 + MIR SINE MIR 3 235 -27 2051 117 13 35 chr4 136080593 136080724 -66247623 + AluSg SINE Alu 1 133 -177 2258 87 27 3 chr4 136080724 136081022 -66247325 + AluSg SINE Alu 1 305 -5 2051 117 13 35 chr4 136081022 136081206 -66247141 + AluSg SINE Alu 133 309 -1 2256 70 7 14 chr4 136081716 136082025 -66246322 + AluSp SINE Alu 1 307 0 33 73 0 0 chr4 136082672 136082740 -66245607 + AT_rich Low_complexity Low_complexity 1 68 0 1966 87 0 47 chr4 136082891 136083167 -66245180 + AluSc SINE Alu 30 292 -17 4192 155 36 60 chr4 136083172 136084055 -66244292 - L1MB7 LINE L1 -41 6143 5282 2129 118 3 0 chr4 136084211 136084498 -66243849 + AluSx SINE Alu 1 288 -24 2063 129 19 10 chr4 136084568 136084877 -66243470 + AluSx SINE Alu 1 312 0 1849 175 0 3 chr4 136085380 136085672 -66242675 - AluJb SINE Alu -21 291 1 5450 161 19 8 chr4 136085763 136086716 -66241631 + L1MA3 LINE L1 5343 6305 0 384 220 267 57 chr4 136087113 136087421 -66240926 + L1ME4a LINE L1 5674 6073 -48 2022 131 7 3 chr4 136087421 136087712 -66240635 + AluSx SINE Alu 1 292 -20 384 220 267 57 chr4 136087712 136087774 -66240573 + L1ME4a LINE L1 6073 6121 0 1717 157 34 14 chr4 136088010 136088303 -66240044 - AluSx SINE Alu -13 299 1 251 143 0 0 chr4 136088318 136088384 -66239963 - Alu SINE Alu 0 312 247 1768 115 48 15 chr4 136088394 136088663 -66239684 - AluSx SINE Alu -34 278 1 24 0 0 0 chr4 136089101 136089125 -66239222 + AT_rich Low_complexity Low_complexity 1 24 0 291 335 129 6 chr4 136089154 136089324 -66239023 + MIR SINE MIR 2 192 -70 2167 102 3 10 chr4 136089330 136089624 -66238723 + AluSq SINE Alu 1 292 -21 1549 200 7 17 chr4 136089682 136089982 -66238365 - AluJb SINE Alu -15 297 1 843 177 140 27 chr4 136090036 136090222 -66238125 + AluJo SINE Alu 86 292 -20 241 198 188 10 chr4 136090691 136090787 -66237560 - L1ME4a LINE L1 -49 6072 5960 516 314 55 4 chr4 136090846 136091082 -66237265 - L1ME4a LINE L1 -299 5822 5575 2118 110 30 7 chr4 136091451 136091752 -66236595 + AluSx SINE Alu 1 308 -4 689 106 0 0 chr4 136091898 136091983 -66236364 - AluSg SINE Alu -224 86 2 1996 149 10 0 chr4 136092210 136092506 -66235841 - AluJo SINE Alu -13 299 1 1363 180 19 64 chr4 136092617 136092796 -66235551 - AluJo SINE Alu -9 303 142 1631 126 4 0 chr4 136092796 136093026 -66235321 - AluSp SINE Alu -6 307 77 1363 180 19 64 chr4 136093026 136093157 -66235190 - AluJo SINE Alu -170 142 7 758 127 0 0 chr4 136093161 136093271 -66235076 - L1MB3 LINE L1 -40 6143 6034 1498 195 80 28 chr4 136094220 136094507 -66233840 + AluJo SINE Alu 1 302 0 196 290 14 29 chr4 136094566 136094635 -66233712 + L3 LINE CR1 1508 1575 -2 2084 117 7 3 chr4 136094729 136095019 -66233328 - AluSx SINE Alu -21 291 1 2305 81 3 0 chr4 136095030 136095337 -66233010 - AluSx SINE Alu 0 308 1 2375 102 0 0 chr4 136095492 136095796 -66232551 - AluSx SINE Alu -8 304 1 24 32 0 0 chr4 136095882 136095913 -66232434 + AT_rich Low_complexity Low_complexity 1 31 0 1213 146 5 20 chr4 136095993 136096192 -66232155 - AluSg/x SINE Alu -4 305 110 21 36 0 0 chr4 136096245 136096273 -66232074 + AT_rich Low_complexity Low_complexity 1 28 0 430 172 132 29 chr4 136096393 136096567 -66231780 - L1MEc LINE L1 -4181 2215 2024 2326 88 0 3 chr4 136096583 136096879 -66231468 - AluSg SINE Alu -15 295 1 205 372 13 0 chr4 136097161 136097239 -66231108 - L2 LINE L2 -6 3266 3188 2262 81 17 10 chr4 136097519 136097817 -66230530 + AluSq SINE Alu 1 300 -13 426 344 57 23 chr4 136097895 136098031 -66230316 + L2 LINE L2 2185 2315 -999 1976 122 6 10 chr4 136098031 136098342 -66230005 + AluSx SINE Alu 1 310 -2 426 344 57 23 chr4 136098342 136098643 -66229704 + L2 LINE L2 2315 2694 -620 1208 63 0 0 chr4 136098689 136098831 -66229516 - L1PA8 LINE L1 -14 6158 6017 189 333 153 0 chr4 136098888 136098960 -66229387 + L2 LINE L2 2736 2818 -496 2423 55 0 3 chr4 136099072 136099382 -66228965 - AluSc SINE Alu 0 309 1 2253 101 3 0 chr4 136099550 136099847 -66228500 - AluSg SINE Alu -12 298 1 259 61 0 0 chr4 136099871 136099904 -66228443 - Alu SINE Alu -267 34 2 890 209 0 0 chr4 136099906 136100069 -66228278 - FRAM SINE Alu -15 161 1 2191 114 13 0 chr4 136100077 136100375 -66227972 - AluSx SINE Alu -10 302 1 246 179 103 39 chr4 136100397 136100475 -66227872 - MER3 DNA MER1_type -2 207 125 585 81 14 0 chr4 136100475 136100549 -66227798 + AluS SINE Alu 2 76 -237 465 270 75 23 chr4 136101594 136102009 -66226338 + L1ME LINE L1 5341 5808 -313 592 228 125 0 chr4 136102035 136102228 -66226119 + MIR SINE MIR 47 262 0 2120 122 16 0 chr4 136102284 136102588 -66225759 + AluSq SINE Alu 1 309 -4 2215 79 34 7 chr4 136102667 136102959 -66225388 + AluSx SINE Alu 1 300 -12 2133 143 0 0 chr4 136103310 136103610 -66224737 - AluSx SINE Alu -12 300 1 457 167 0 0 chr4 136104730 136104802 -66223545 - AluJ/FLAM SINE Alu -239 73 2 952 186 0 91 chr4 136104820 136105041 -66223306 + AluJo SINE Alu 85 285 -27 2505 80 0 0 chr4 136105125 136105426 -66222921 + AluSx SINE Alu 2 302 -10 204 364 60 5 chr4 136105493 136105677 -66222670 + L2 LINE L2 2565 2758 -556 29 0 0 0 chr4 136106399 136106428 -66221919 + AT_rich Low_complexity Low_complexity 1 29 0 2380 199 42 36 chr4 136106620 136107144 -66221203 - MER68 LTR ERV1 -6 556 30 2392 94 0 3 chr4 136107144 136107443 -66220904 + AluSx SINE Alu 1 298 -14 1930 149 35 0 chr4 136107776 136108065 -66220282 + AluSx SINE Alu 3 301 -11 2094 65 0 0 chr4 136108370 136108630 -66219717 + L1PA6 LINE L1 5891 6150 -4 1456 217 118 30 chr4 136108670 136109157 -66219190 - L1MC5 LINE L1 -470 7491 6953 2164 102 26 23 chr4 136109157 136109460 -66218887 - AluSg SINE Alu -5 305 2 1456 217 118 30 chr4 136109460 136109498 -66218849 - L1MC5 LINE L1 -1008 6953 6920 747 168 0 29 chr4 136109676 136109813 -66218534 + AluJo SINE Alu 1 133 -169 1033 150 11 28 chr4 136109951 136110131 -66218216 + AluJo SINE Alu 120 296 -16 2365 70 3 13 chr4 136110131 136110431 -66217916 + AluY SINE Alu 1 297 -14 2136 164 27 45 chr4 136110560 136110962 -66217385 - MSTD LTR MaLR 0 396 2 2282 88 7 0 chr4 136111228 136111523 -66216824 - AluSp SINE Alu -16 297 1 1376 155 0 0 chr4 136111775 136111969 -66216378 - AluJb SINE Alu -118 194 1 1184 213 156 52 chr4 136112002 136112407 -66215940 - L1MC5 LINE L1 -1981 5827 5367 2122 114 10 17 chr4 136112407 136112538 -66215809 + AluSc SINE Alu 1 131 -178 2295 99 3 0 chr4 136112538 136112841 -66215506 + AluSq SINE Alu 1 304 -9 2122 114 10 17 chr4 136112841 136113006 -66215341 + AluSc SINE Alu 131 295 -14 1184 213 156 52 chr4 136113006 136113061 -66215286 - L1MC5 LINE L1 -2441 5367 5319 1777 145 78 30 chr4 136113229 136113310 -66215037 + MER7A DNA MER2_type 1 77 -2961 2215 115 13 3 chr4 136113310 136113614 -66214733 - AluSx SINE Alu -5 307 1 1777 145 78 30 chr4 136113614 136113864 -66214483 + MER7A DNA MER2_type 77 346 0 2272 112 0 16 chr4 136113921 136114235 -66214112 - AluSg SINE Alu -1 309 1 2537 131 25 11 chr4 136114490 136114925 -66213422 - L1MB3 LINE L1 -1 6182 5742 1722 148 7 28 chr4 136115601 136115884 -66212463 + AluJo SINE Alu 1 277 -35 249 98 0 0 chr4 136115884 136115925 -66212422 + (CA)n Simple_repeat Simple_repeat 1 41 0 1748 167 3 39 chr4 136115930 136116073 -66212274 + AluJo SINE Alu 1 129 -183 2214 114 3 3 chr4 136116073 136116370 -66211977 + AluSx SINE Alu 1 297 -15 1748 167 3 39 chr4 136116370 136116531 -66211816 + AluJo SINE Alu 129 294 -18 1041 181 6 0 chr4 136116540 136116706 -66211641 + FAM SINE Alu 1 167 -8 793 116 0 0 chr4 136116706 136116818 -66211529 + L1MA3 LINE L1 6183 6294 -11 2235 72 0 46 chr4 136117704 136118010 -66210337 + AluY SINE Alu 1 292 -19 187 259 86 12 chr4 136118064 136118145 -66210202 + MIR SINE MIR 162 248 -14 218 164 98 16 chr4 136118735 136118796 -66209551 - MIR SINE MIR -107 155 90 1871 111 19 4 chr4 136118937 136119198 -66209149 + AluSg SINE Alu 2 266 -44 506 103 29 0 chr4 136119198 136119266 -66209081 + AluSg/x SINE Alu 217 286 -24 2387 75 0 3 chr4 136119503 136119795 -66208552 + AluY SINE Alu 1 291 -20 2416 80 0 3 chr4 136120056 136120367 -66207980 - AluY SINE Alu -1 310 1 213 39 0 0 chr4 136120484 136120510 -66207837 + (T)n Simple_repeat Simple_repeat 1 26 0 2358 85 0 0 chr4 136120963 136121258 -66207089 + AluSx SINE Alu 1 295 -17 2255 93 7 3 chr4 136121259 136121541 -66206806 + AluSx SINE Alu 2 287 -25 258 32 0 0 chr4 136121541 136121572 -66206775 + (CCA)n Simple_repeat Simple_repeat 1 31 0 29 70 0 0 chr4 136123134 136123191 -66205156 + GC_rich Low_complexity Low_complexity 1 57 0 255 125 0 0 chr4 136123612 136123652 -66204695 + (CCG)n Simple_repeat Simple_repeat 1 40 0 1207 19 39 19 chr4 136124379 136124533 -66203814 + L1PA4 LINE L1 5997 6153 -2 2463 67 3 3 chr4 136124756 136125068 -66203279 + AluSx SINE Alu 1 312 0 2459 75 3 0 chr4 136125109 136125415 -66202932 + AluSp SINE Alu 1 307 -6 2526 78 0 0 chr4 136125601 136125907 -66202440 + AluSx SINE Alu 1 306 -6 805 229 0 6 chr4 136126367 136126560 -66201787 + FAM SINE Alu 1 56 0 734 105 9 0 chr4 136126881 136126995 -66201352 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 657 174 50 0 chr4 136126998 136127119 -66201228 - FLAM_C SINE Alu 0 143 17 217 281 0 0 chr4 136127250 136127307 -66201040 + MIR SINE MIR 44 100 -108 41 58 0 0 chr4 136127402 136127471 -66200876 + AT_rich Low_complexity Low_complexity 1 69 0 1272 147 11 83 chr4 136127499 136127765 -66200582 - AluJo SINE Alu -64 248 2 2457 73 0 19 chr4 136127790 136128107 -66200240 - AluY SINE Alu 0 311 1 2111 124 3 0 chr4 136128107 136128406 -66199941 - AluSp SINE Alu -13 300 1 2110 87 0 37 chr4 136128427 136128727 -66199620 - AluSx SINE Alu -13 299 11 1938 141 16 23 chr4 136129340 136129506 -66198841 - AluSx SINE Alu -9 303 138 2550 59 0 0 chr4 136129506 136129809 -66198538 - AluY SINE Alu -8 303 1 1938 141 16 23 chr4 136129809 136129947 -66198400 - AluSx SINE Alu -174 138 1 1362 132 0 97 chr4 136129947 136130205 -66198142 - AluJo SINE Alu -17 295 63 650 148 8 33 chr4 136130207 136130329 -66198018 - AluJo/FLAM SINE Alu -180 132 14 21 0 0 0 chr4 136130357 136130378 -66197969 + AT_rich Low_complexity Low_complexity 1 21 0 2367 81 0 7 chr4 136131666 136131963 -66196384 + AluY SINE Alu 1 295 -16 2238 107 7 0 chr4 136132010 136132301 -66196046 + AluSq SINE Alu 3 295 -18 667 232 21 7 chr4 136132313 136132455 -66195892 + AluSg SINE Alu 3 146 -164 328 257 101 36 chr4 136132461 136132669 -66195678 - L1ME LINE L1 -330 5791 5577 2524 66 7 0 chr4 136132669 136132973 -66195374 - AluY SINE Alu -5 306 1 328 257 101 36 chr4 136132973 136133050 -66195297 - L1ME LINE L1 -544 5577 5506 2400 87 7 0 chr4 136133051 136133351 -66194996 - AluSx SINE Alu -10 302 1 2030 124 0 3 chr4 136133614 136133930 -66194417 - AluSx SINE Alu 0 315 1 22 0 0 0 chr4 136134028 136134050 -66194297 + AT_rich Low_complexity Low_complexity 1 22 0 2085 136 0 3 chr4 136134192 136134487 -66193860 - AluSx SINE Alu -18 294 1 23 0 0 0 chr4 136134489 136134512 -66193835 + AT_rich Low_complexity Low_complexity 1 23 0 248 288 72 0 chr4 136134614 136134725 -66193622 - L1ME LINE L1 -401 5720 5602 592 125 11 0 chr4 136134760 136134848 -66193499 - AluS SINE Alu -223 90 2 2300 91 3 0 chr4 136134901 136135198 -66193149 - AluSp SINE Alu -14 299 2 1744 154 59 0 chr4 136136064 136136336 -66192011 - AluJo SINE Alu -14 298 11 1785 190 6 3 chr4 136136495 136136806 -66191541 - AluJb SINE Alu 0 312 1 2250 88 32 0 chr4 136136981 136137264 -66191083 - AluSx SINE Alu -20 292 1 1387 194 159 79 chr4 136137302 136137702 -66190645 - L1ME1 LINE L1 -220 5946 5483 1884 150 4 7 chr4 136137702 136137982 -66190365 - AluJb SINE Alu -29 283 5 1387 194 159 79 chr4 136137982 136138164 -66190183 - L1ME1 LINE L1 -683 5483 5317 1836 145 3 11 chr4 136138176 136138458 -66189889 + AluSx SINE Alu 1 280 -32 238 239 60 34 chr4 136138494 136138611 -66189736 - L1 LINE L1 -841 5305 5186 1953 100 75 14 chr4 136139293 136139572 -66188775 + AluSx SINE Alu 1 296 -16 239 331 108 31 chr4 136139804 136139934 -66188413 - L2 LINE L2 -432 2882 2743 2163 114 3 10 chr4 136140046 136140354 -66187993 - AluSx SINE Alu -6 306 1 31 26 0 0 chr4 136140499 136140537 -66187810 + AT_rich Low_complexity Low_complexity 1 38 0 1994 136 0 3 chr4 136140537 136140824 -66187523 - AluJo SINE Alu -26 286 1 2173 70 33 27 chr4 136140940 136141241 -66187106 - AluSp SINE Alu -9 304 2 2349 100 0 3 chr4 136142037 136142338 -66186009 - AluSx SINE Alu -12 300 1 180 0 0 0 chr4 136142338 136142358 -66185989 + (T)n Simple_repeat Simple_repeat 1 20 0 1988 100 0 4 chr4 136142734 136142995 -66185352 - AluSp SINE Alu -53 260 1 1360 199 127 30 chr4 136143342 136143745 -66184602 - L1MC4 LINE L1 -150 7892 7451 6424 52 14 35 chr4 136143773 136144627 -66183720 - SVA Other Other 0 1386 551 2188 115 0 0 chr4 136144887 136145174 -66183173 - AluSx SINE Alu -25 287 1 221 219 0 0 chr4 136145252 136145293 -66183054 + (TG)n Simple_repeat Simple_repeat 2 42 0 25 90 0 0 chr4 136145509 136145576 -66182771 + AT_rich Low_complexity Low_complexity 1 67 0 4602 168 74 37 chr4 136146239 136147272 -66181075 - MER11C LTR ERVK 0 1071 1 248 177 32 0 chr4 136147809 136147871 -66180476 + CT-rich Low_complexity Low_complexity 6 69 0 1939 155 13 3 chr4 136147874 136148183 -66180164 - AluJo SINE Alu 0 312 1 1845 73 165 0 chr4 136148272 136148533 -66179814 - AluY SINE Alu -7 304 1 762 171 23 0 chr4 136148536 136148665 -66179682 - FLAM_A SINE Alu -1 132 1 37 0 0 0 chr4 136149041 136149078 -66179269 + AT_rich Low_complexity Low_complexity 1 37 0 1581 122 0 0 chr4 136149082 136149303 -66179044 + AluSg/x SINE Alu 87 307 -5 339 157 0 0 chr4 136149529 136149580 -66178767 + L1PA16 LINE L1 6023 6073 -93 7203 201 11 11 chr4 136149581 136149858 -66178489 - L1P LINE L1 -788 5358 5082 2156 101 98 18 chr4 136149858 136150195 -66178152 - THE1B LTR MaLR 0 364 1 7203 201 11 11 chr4 136150195 136151517 -66176830 - L1P LINE L1 -1064 5082 3763 731 294 129 3 chr4 136151536 136151825 -66176522 - HAL1b LINE L1 -736 1668 1417 192 40 0 0 chr4 136151825 136151850 -66176497 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 731 294 129 3 chr4 136151850 136151975 -66176372 - HAL1b LINE L1 -987 1417 366 2106 114 0 0 chr4 136151987 136152268 -66176079 + AluSx SINE Alu 1 281 -31 250 50 0 0 chr4 136152269 136152309 -66176038 - Alu SINE Alu 0 300 261 519 128 26 0 chr4 136152409 136152487 -66175860 + AluSg/x SINE Alu 217 296 -16 2046 80 4 4 chr4 136152544 136152818 -66175529 + AluSx SINE Alu 1 274 -38 1454 130 126 21 chr4 136152822 136152951 -66175396 + AluSx SINE Alu 9 123 -189 2224 108 0 3 chr4 136152951 136153247 -66175100 + AluSx SINE Alu 1 295 -17 1454 130 126 21 chr4 136153247 136153356 -66174991 + AluSx SINE Alu 123 272 -40 2026 103 43 13 chr4 136153382 136153684 -66174663 + AluSx SINE Alu 1 311 -1 2152 99 3 3 chr4 136153705 136153999 -66174348 + AluSx SINE Alu 1 294 -18 524 120 0 40 chr4 136154000 136154100 -66174247 + AluS SINE Alu 2 97 -216 198 0 0 0 chr4 136154200 136154222 -66174125 + (A)n Simple_repeat Simple_repeat 1 22 0 319 218 287 0 chr4 136154386 136154487 -66173860 + L2 LINE L2 2229 2358 -956 2437 54 10 3 chr4 136154487 136154781 -66173566 - AluY SINE Alu -15 296 1 746 267 102 51 chr4 136154793 136155113 -66173234 + L2 LINE L2 2476 2819 -495 2096 139 3 0 chr4 136155113 136155416 -66172931 - AluSx SINE Alu -8 304 1 746 267 102 51 chr4 136155416 136155469 -66172878 + L2 LINE L2 2819 2868 -446 264 256 153 15 chr4 136155607 136155744 -66172603 + L2 LINE L2 3104 3259 -54 2205 112 10 0 chr4 136155923 136156219 -66172128 + AluSx SINE Alu 1 299 -13 2224 92 21 0 chr4 136156544 136156825 -66171522 + AluSc SINE Alu 1 287 -22 356 235 71 0 chr4 136156938 136157023 -66171324 - L2 LINE L2 0 3272 3182 266 303 68 80 chr4 136157080 136157336 -66171011 - L2 LINE L2 -1352 1962 1711 198 0 0 0 chr4 136157336 136157358 -66170989 + (TG)n Simple_repeat Simple_repeat 2 23 0 266 303 68 80 chr4 136157358 136157513 -66170834 - L2 LINE L2 -1603 1711 1556 963 211 78 15 chr4 136157520 136157724 -66170623 - MER20 DNA MER1_type 0 219 3 946 271 108 39 chr4 136157724 136158053 -66170294 - L1MEc LINE L1 -4736 1908 1603 554 227 109 0 chr4 136158053 136158172 -66170175 - FLAM_A SINE Alu 0 133 2 946 271 108 39 chr4 136158172 136158639 -66169708 - L1MEc LINE L1 -5041 1603 962 641 330 26 7 chr4 136159165 136159438 -66168909 - L1MEc LINE L1 -6081 744 467 278 267 27 0 chr4 136159440 136159515 -66168832 + L1ME LINE L1 5448 5524 -642 231 256 13 13 chr4 136159615 136159693 -66168654 + L1MEd LINE L1 1006 1083 -5036 236 266 26 91 chr4 136159807 136159961 -66168386 + L1MEd LINE L1 1072 1215 -4904 285 275 44 38 chr4 136159974 136160134 -66168213 + L1MEd LINE L1 1381 1541 -4769 2073 223 42 19 chr4 136160454 136160536 -66167811 + L1M4 LINE L1 4626 4705 -1441 2158 103 13 3 chr4 136160536 136160836 -66167511 + AluSq SINE Alu 1 303 -10 2073 223 42 19 chr4 136160836 136161319 -66167028 + L1M4 LINE L1 4705 5204 -942 1636 215 47 61 chr4 136161322 136161746 -66166601 - MER47B DNA MER2_type 0 418 1 325 232 36 9 chr4 136161751 136161863 -66166484 + L1M4 LINE L1 4369 4483 -1663 2610 58 0 3 chr4 136161867 136162179 -66166168 + AluY SINE Alu 1 311 0 1046 110 37 6 chr4 136162184 136162348 -66165999 + AluSg/x SINE Alu 129 297 -15 722 247 82 98 chr4 136162357 136162774 -66165573 + L1M4 LINE L1 4496 4905 -1241 1208 162 0 5 chr4 136162876 136163080 -66165267 + AluSg/x SINE Alu 100 302 -8 22 56 0 0 chr4 136163159 136163195 -66165152 + AT_rich Low_complexity Low_complexity 1 36 0 5808 72 26 11 chr4 136163277 136164249 -66164098 - SVA Other Other -520 866 7 317 239 56 0 chr4 136164268 136164339 -66164008 - L1MC4 LINE L1 -602 7440 7366 2066 128 3 7 chr4 136164454 136164751 -66163596 - AluSx SINE Alu -16 296 1 319 195 24 152 chr4 136164759 136164923 -66163424 - L1MC4a LINE L1 -507 7301 7159 1828 140 22 48 chr4 136164942 136165256 -66163091 - AluJo SINE Alu -6 306 1 963 209 138 0 chr4 136165258 136165511 -66162836 - L1ME LINE L1 -347 5819 5532 2145 87 34 7 chr4 136165595 136165893 -66162454 - AluY SINE Alu -5 306 1 1820 152 7 10 chr4 136165929 136166219 -66162128 - AluJb SINE Alu -23 289 1 573 100 0 0 chr4 136166398 136166468 -66161879 - Alu SINE Alu -21 290 221 315 109 0 22 chr4 136166468 136166514 -66161833 - Alu SINE Alu -257 45 1 305 141 8 0 chr4 136166558 136166612 -66161735 - AluSx SINE Alu -6 295 250 1384 122 0 5 chr4 136166613 136166809 -66161538 - AluSx SINE Alu -117 195 1 226 250 26 0 chr4 136167043 136167119 -66161228 - L1MC4 LINE L1 -4 8038 7961 650 194 0 0 chr4 136167328 136167431 -66160916 + FAM SINE Alu 8 110 -75 22 70 0 0 chr4 136167553 136167596 -66160751 + AT_rich Low_complexity Low_complexity 1 43 0 945 136 32 19 chr4 136167629 136167783 -66160564 + FRAM SINE Alu 1 151 -25 183 80 0 0 chr4 136167786 136167811 -66160536 + (ATG)n Simple_repeat Simple_repeat 3 27 0 250 269 51 13 chr4 136168095 136168173 -66160174 - L1ME LINE L1 -410 5760 5680 312 267 13 0 chr4 136168208 136168283 -66160064 - MER112 DNA MER1_type -11 249 174 733 115 0 167 chr4 136168407 136168563 -66159784 + FLAM_C SINE Alu 1 130 -3 827 186 98 49 chr4 136168625 136168829 -66159518 + MER20 DNA MER1_type 6 219 0 270 275 53 70 chr4 136168868 136168936 -66159411 - L1ME LINE L1 -579 5583 5515 2212 111 0 0 chr4 136168936 136169224 -66159123 - AluSx SINE Alu -24 288 1 270 275 53 70 chr4 136169224 136169326 -66159021 - L1ME LINE L1 -647 5515 5416 1960 152 3 7 chr4 136169351 136169661 -66158686 - AluSx SINE Alu -3 309 1 2047 131 0 0 chr4 136169663 136169961 -66158386 - AluSx SINE Alu -14 298 1 350 305 74 25 chr4 136169981 136170184 -66158163 - L1ME LINE L1 -746 5400 5188 27 0 0 0 chr4 136170561 136170588 -66157759 + AT_rich Low_complexity Low_complexity 1 27 0 2086 141 0 0 chr4 136171188 136171485 -66156862 - AluSx SINE Alu -15 297 1 22 35 0 0 chr4 136171531 136171560 -66156787 + AT_rich Low_complexity Low_complexity 1 29 0 2452 70 0 0 chr4 136172904 136173205 -66155142 + AluY SINE Alu 1 301 -10 2282 109 0 13 chr4 136173287 136173600 -66154747 - AluSq SINE Alu -4 309 1 22 56 0 0 chr4 136173600 136173636 -66154711 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr4 136173645 136173673 -66154674 + AT_rich Low_complexity Low_complexity 1 28 0 1110 81 0 0 chr4 136173678 136173814 -66154533 - AluSg SINE Alu -174 136 1 203 194 0 0 chr4 136173963 136173999 -66154348 + T-rich Low_complexity Low_complexity 1 36 0 2608 36 0 3 chr4 136174529 136174830 -66153517 - AluY SINE Alu -11 300 1 2547 69 0 0 chr4 136175134 136175437 -66152910 - AluY SINE Alu -8 303 1 1843 144 17 0 chr4 136175443 136175735 -66152612 - AluSx SINE Alu -15 297 1 2028 121 4 0 chr4 136175833 136176144 -66152203 - AluSp SINE Alu 0 312 1 315 194 0 0 chr4 136176885 136176947 -66151400 + L1MC2 LINE L1 6265 6326 -18 234 91 0 0 chr4 136177273 136177306 -66151041 + (TA)n Simple_repeat Simple_repeat 2 34 0 2134 143 0 0 chr4 136177306 136177613 -66150734 - AluSg SINE Alu -3 307 1 326 93 0 0 chr4 136177653 136177696 -66150651 + Alu SINE Alu 1 43 -260 1571 128 4 0 chr4 136177813 136178039 -66150308 - AluSg/x SINE Alu 0 312 86 2060 204 98 20 chr4 136178039 136178253 -66150094 - L1ME1 LINE L1 -267 5899 5703 189 0 0 0 chr4 136178253 136178274 -66150073 + (CA)n Simple_repeat Simple_repeat 2 22 0 2060 204 98 20 chr4 136178274 136178489 -66149858 - L1ME1 LINE L1 -463 5703 5506 2102 99 0 51 chr4 136178489 136178802 -66149545 - AluSq SINE Alu -16 297 1 2141 108 0 7 chr4 136178810 136179107 -66149240 - AluSc SINE Alu -12 297 3 2060 204 98 20 chr4 136179107 136179335 -66149012 - L1ME1 LINE L1 -666 5500 5188 2358 96 3 3 chr4 136179343 136179655 -66148692 - AluSx SINE Alu 0 312 1 222 37 0 0 chr4 136179784 136179811 -66148536 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 920 121 0 0 chr4 136179815 136179939 -66148408 - AluSq/x SINE Alu -188 125 2 227 189 189 57 chr4 136180469 136180575 -66147772 + MIR SINE MIR 143 262 0 342 277 78 42 chr4 136180873 136181039 -66147308 + MIR SINE MIR 58 229 -33 2363 93 3 0 chr4 136181722 136182022 -66146325 - AluSx SINE Alu -11 301 1 22 0 0 0 chr4 136182027 136182049 -66146298 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 136182166 136182186 -66146161 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 529 106 0 0 chr4 136182196 136182262 -66146085 - Alu SINE Alu -244 67 2 1177 256 135 35 chr4 136182298 136182594 -66145753 - L1ME3 LINE L1 -60 6102 5837 2137 116 3 6 chr4 136182594 136182905 -66145442 - AluSx SINE Alu -1 311 2 1177 256 135 35 chr4 136182905 136183178 -66145169 - L1ME3 LINE L1 -325 5837 5476 853 236 122 20 chr4 136183241 136183537 -66144810 - L1ME2 LINE L1 0 6164 5839 492 286 131 17 chr4 136183540 136183715 -66144632 - L1MC4a LINE L1 -1114 6694 6500 2123 120 7 7 chr4 136183771 136184080 -66144267 + AluSg SINE Alu 1 309 -1 2144 113 3 0 chr4 136184188 136184479 -66143868 - AluSc SINE Alu -15 294 3 394 241 131 7 chr4 136184766 136184911 -66143436 + MIR SINE MIR 51 213 -49 200 139 28 0 chr4 136185526 136185562 -66142785 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 21 36 0 0 chr4 136187804 136187832 -66140515 + AT_rich Low_complexity Low_complexity 1 28 0 2206 109 10 0 chr4 136188065 136188359 -66139988 - AluSg SINE Alu -13 297 1 469 18 0 0 chr4 136188657 136188712 -66139635 + AluY SINE Alu 243 297 -13 517 246 18 9 chr4 136188950 136189060 -66139287 + FLAM_A SINE Alu 2 112 -30 2138 102 3 13 chr4 136189062 136189366 -66138981 - AluSx SINE Alu -11 301 1 1146 210 20 32 chr4 136189437 136189689 -66138658 + AluJo SINE Alu 1 249 -63 2087 88 41 30 chr4 136189710 136190005 -66138342 - AluSq SINE Alu -11 302 5 680 169 128 116 chr4 136190192 136190486 -66137861 - MER33 DNA MER1_type -2261 324 24 2339 104 0 0 chr4 136190486 136190793 -66137554 - AluSx SINE Alu -5 307 1 680 169 128 116 chr4 136190793 136190818 -66137529 - MER33 DNA MER1_type -2561 24 1 2049 123 23 7 chr4 136191358 136191660 -66136687 - AluSg1 SINE Alu -2 307 1 1787 77 5 0 chr4 136191801 136192023 -66136324 - AluSp SINE Alu -8 305 83 2343 91 0 0 chr4 136192958 136193255 -66135092 - AluSg SINE Alu -13 297 1 1638 166 3 30 chr4 136193300 136193601 -66134746 + AluJo SINE Alu 1 293 -19 1562 178 0 17 chr4 136193681 136193979 -66134368 - AluSx SINE Alu -19 293 1 1232 216 92 21 chr4 136194114 136194452 -66133895 + L1MD2 LINE L1 5996 6357 -2 439 237 88 42 chr4 136194797 136194923 -66133424 - HAL1 LINE L1 -910 1597 1478 1813 144 50 13 chr4 136194923 136195221 -66133126 - AluSg SINE Alu -1 309 1 2058 105 0 77 chr4 136195226 136195412 -66132935 - AluSq SINE Alu -15 298 146 2096 117 7 0 chr4 136195412 136195703 -66132644 - AluSx SINE Alu -19 293 1 2058 105 0 77 chr4 136195703 136195839 -66132508 - AluSq SINE Alu -167 146 1 439 237 88 42 chr4 136195839 136195921 -66132426 - HAL1 LINE L1 -1032 1475 1373 1785 151 0 35 chr4 136195933 136196245 -66132102 - AluJb SINE Alu -11 301 1 2383 66 3 16 chr4 136196252 136196555 -66131792 - AluY SINE Alu -12 299 1 2469 59 0 23 chr4 136196901 136197204 -66131143 - AluSq SINE Alu -17 296 1 483 213 71 24 chr4 136198118 136198245 -66130102 + L2 LINE L2 3181 3313 0 2078 116 0 66 chr4 136198469 136198789 -66129558 - AluSx SINE Alu -13 299 1 2480 79 0 0 chr4 136198823 136199128 -66129219 - AluSg SINE Alu -5 305 1 291 54 0 0 chr4 136199312 136199349 -66128998 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 1013 75 0 15 chr4 136199349 136199482 -66128865 - AluSp/q SINE Alu -25 288 158 231 299 56 37 chr4 136199513 136199620 -66128727 + MIR3 SINE MIR 79 187 -21 237 98 0 0 chr4 136200458 136200499 -66127848 + (T)n Simple_repeat Simple_repeat 1 41 0 460 267 83 46 chr4 136201464 136201704 -66126643 + L2 LINE L2 3065 3313 0 785 316 92 39 chr4 136202104 136202788 -66125559 - L2 LINE L2 -2 3270 2553 310 333 55 12 chr4 136202834 136202999 -66125348 - L2 LINE L2 -1274 2040 1869 516 148 0 0 chr4 136203311 136203399 -66124948 + L1PB1 LINE L1 6062 6149 -2 2234 102 3 3 chr4 136203490 136203794 -66124553 + AluSc SINE Alu 6 309 0 2211 120 0 3 chr4 136204133 136204442 -66123905 - AluSx SINE Alu -4 308 1 2355 69 7 3 chr4 136205714 136206003 -66122344 + AluSg1 SINE Alu 1 290 -19 775 148 81 7 chr4 136206706 136206895 -66121452 - MER33 DNA MER1_type -234 90 1 350 228 137 19 chr4 136206922 136207133 -66121214 - L1ME LINE L1 -599 5565 5330 351 71 5 0 chr4 136207169 136207218 -66121129 - Alu SINE Alu -27 273 231 836 189 5 95 chr4 136207291 136207481 -66120866 - FAM SINE Alu -2 173 1 703 124 41 0 chr4 136207553 136207674 -66120673 - L1MA4 LINE L1 -15 6285 6160 1877 136 29 0 chr4 136207872 136208152 -66120195 - AluSx SINE Alu -24 288 1 352 298 167 13 chr4 136208535 136208763 -66119584 - L1M4 LINE L1 -2816 3330 3068 872 164 41 7 chr4 136208868 136209014 -66119333 + AluSg/x SINE Alu 130 280 -32 320 178 14 0 chr4 136209035 136209108 -66119239 + (TA)n Simple_repeat Simple_repeat 2 75 0 901 93 7 0 chr4 136209118 136209258 -66119089 + L1MA5 LINE L1 6159 6299 -1 586 114 0 0 chr4 136209577 136209665 -66118682 - AluSg/x SINE Alu -8 302 215 236 187 196 19 chr4 136209740 136209847 -66118500 - L1M4 LINE L1 -3142 3004 2879 743 184 7 7 chr4 136209928 136210064 -66118283 + AluJo SINE Alu 3 138 -174 275 276 76 0 chr4 136210293 136210438 -66117909 - L1M4 LINE L1 -3643 2503 2348 2149 126 0 22 chr4 136210466 136210817 -66117530 - AluSx SINE Alu 0 344 1 4177 202 37 34 chr4 136210885 136211682 -66116665 - L1MB2 LINE L1 -2 6169 5376 1883 130 29 4 chr4 136211682 136212005 -66116342 - AluSx SINE Alu 0 330 1 4177 202 37 34 chr4 136212005 136212527 -66115820 - L1MB2 LINE L1 -795 5376 4857 1460 206 27 27 chr4 136212527 136212828 -66115519 + AluJo SINE Alu 1 301 -11 2272 107 0 0 chr4 136212831 136213130 -66115217 + AluSq SINE Alu 1 299 -14 4177 202 37 34 chr4 136213130 136213464 -66114883 - L1MB2 LINE L1 -1315 4856 4495 844 163 73 6 chr4 136213470 136213648 -66114699 - L1MB8 LINE L1 -5 6173 5984 3308 133 41 2 chr4 136213652 136214135 -66114212 + MER1A DNA MER1_type 28 529 0 260 202 138 0 chr4 136214138 136214232 -66114115 - L1MB8 LINE L1 -267 5911 5805 22 0 0 0 chr4 136214260 136214282 -66114065 + AT_rich Low_complexity Low_complexity 1 22 0 2210 101 0 3 chr4 136214282 136214569 -66113778 + AluSx SINE Alu 1 286 -26 2247 190 55 18 chr4 136214595 136215090 -66113257 - L1MB8 LINE L1 -353 5831 5319 1305 176 0 18 chr4 136215103 136215325 -66113022 - AluJo SINE Alu -23 289 72 287 132 98 0 chr4 136215325 136215394 -66112953 - L1MB8 LINE L1 -853 5330 5256 4299 166 85 20 chr4 136215520 136216447 -66111900 - L1MC1 LINE L1 -18 6315 5329 410 214 77 0 chr4 136216502 136216619 -66111728 - L1MC1 LINE L1 -821 5325 5200 808 133 16 31 chr4 136216633 136216761 -66111586 - FLAM_C SINE Alu -17 126 1 1658 244 75 58 chr4 136216765 136217455 -66110892 - L1MC1 LINE L1 -949 5197 4496 1082 110 35 6 chr4 136217463 136217636 -66110711 - AluSg/x SINE Alu -14 298 121 1136 244 3 10 chr4 136217643 136217946 -66110401 - AluY SINE Alu 0 301 1 2638 42 0 3 chr4 136267973 136268283 -66060064 + AluY SINE Alu 1 309 -2 1052 168 0 0 chr4 136268290 136268451 -66059896 + AluSg/x SINE Alu 134 294 -18 435 196 117 11 chr4 136268453 136268632 -66059715 - L1MCc LINE L1 -4891 1532 1335 213 239 14 56 chr4 136269053 136269124 -66059223 - MIR SINE MIR 0 262 195 739 183 233 40 chr4 136269243 136269544 -66058803 + L1M4 LINE L1 2997 3355 -2791 2269 114 10 0 chr4 136269544 136269851 -66058496 + AluSg SINE Alu 1 310 0 1467 153 0 5 chr4 136269892 136270115 -66058232 + AluJb SINE Alu 85 306 -6 647 113 0 0 chr4 136270159 136270256 -66058091 - AluSg/x SINE Alu -4 305 209 2059 172 61 46 chr4 136270256 136270796 -66057551 + L1MB4 LINE L1 5625 6172 -8 2196 187 81 93 chr4 136270830 136270986 -66057361 - Charlie1a DNA MER1_type -2042 719 563 2449 87 0 0 chr4 136270986 136271295 -66057052 + AluSc SINE Alu 1 309 0 2196 187 81 93 chr4 136271295 136271453 -66056894 - Charlie1a DNA MER1_type -2198 563 405 2381 95 3 3 chr4 136271453 136271758 -66056589 - AluSx SINE Alu -7 305 1 2196 187 81 93 chr4 136271758 136271814 -66056533 - Charlie1a DNA MER1_type -2356 405 350 754 127 16 0 chr4 136271814 136271940 -66056407 - L1MB2 LINE L1 -7 6164 6037 2196 187 81 93 chr4 136271940 136272295 -66056052 - Charlie1a DNA MER1_type -2411 350 1 35 24 0 0 chr4 136273197 136273239 -66055108 + AT_rich Low_complexity Low_complexity 1 42 0 2177 134 0 0 chr4 136273376 136273675 -66054672 + AluSx SINE Alu 1 299 -13 1085 103 85 0 chr4 136273761 136273926 -66054421 - MER1B DNA MER1_type 0 339 161 25 0 0 0 chr4 136274058 136274083 -66054264 + AT_rich Low_complexity Low_complexity 1 25 0 1817 228 107 10 chr4 136274409 136274897 -66053450 - MLT1F LTR MaLR 0 542 8 292 355 69 23 chr4 136275057 136275274 -66053073 + L2 LINE L2 2816 3042 -230 234 241 0 0 chr4 136275852 136275906 -66052441 - MER112 DNA MER1_type -14 246 193 202 343 0 15 chr4 136276359 136276426 -66051921 - L2 LINE L2 -2430 884 819 * 445 296 91 52 chr4 136276366 136276489 -66051858 + MIR SINE MIR 12 129 -133 1801 160 24 0 chr4 136276489 136276776 -66051571 + AluSx SINE Alu 1 294 -18 445 296 91 52 chr4 136276776 136276882 -66051465 + MIR SINE MIR 129 250 -12 332 164 15 0 chr4 136276884 136276951 -66051396 + CT-rich Low_complexity Low_complexity 1 68 0 2091 126 14 0 chr4 136276951 136277245 -66051102 - AluSq SINE Alu -15 298 1 1731 66 0 97 chr4 136277828 136277944 -66050403 + L1MA1 LINE L1 6038 6164 -138 2443 86 0 13 chr4 136277944 136278258 -66050089 + AluSq SINE Alu 1 310 -3 1731 66 0 97 chr4 136278258 136278430 -66049917 + L1MA1 LINE L1 6164 6298 -4 634 180 0 0 chr4 136278445 136278545 -66049802 - MER5B DNA MER1_type -78 100 1 2340 80 0 10 chr4 136279580 136279880 -66048467 + AluSq SINE Alu 1 297 -16 869 251 61 20 chr4 136280433 136280680 -66047667 + MIR SINE MIR 6 262 0 22 88 0 0 chr4 136280758 136280815 -66047532 + AT_rich Low_complexity Low_complexity 1 57 0 399 218 67 31 chr4 136281054 136281249 -66047098 - L1MC4a LINE L1 0 7808 7563 201 250 0 19 chr4 136281566 136281618 -66046729 + GA-rich Low_complexity Low_complexity 2 52 0 2258 136 0 0 chr4 136281619 136281929 -66046418 + AluSx SINE Alu 3 312 0 2070 133 0 13 chr4 136282708 136283024 -66045323 + AluSx SINE Alu 1 312 0 254 93 0 0 chr4 136283031 136283074 -66045273 + Alu SINE Alu 257 299 -2 927 74 0 0 chr4 136283194 136283315 -66045032 + AluY SINE Alu 182 302 -9 206 246 14 0 chr4 136284520 136284589 -66043758 + T-rich Low_complexity Low_complexity 6 75 0 21 0 0 0 chr4 136284716 136284737 -66043610 + AT_rich Low_complexity Low_complexity 1 21 0 245 247 79 0 chr4 136285553 136285642 -66042705 - L1ME4a LINE L1 -196 5925 5830 856 113 0 24 chr4 136285661 136285785 -66042562 - AluJb SINE Alu -191 121 1 258 293 28 9 chr4 136285816 136285922 -66042425 - L1ME4a LINE L1 -1993 5815 5708 2191 103 0 17 chr4 136285931 136286231 -66042116 + AluSx SINE Alu 1 295 -17 2229 110 17 0 chr4 136286483 136286784 -66041563 - AluSq SINE Alu -7 306 1 28239 38 38 2 chr4 136287360 136291055 -66037292 + L1P LINE L1 1 3830 -2316 418 184 28 111 chr4 136291397 136291510 -66036837 + L1MCa LINE L1 2003 2124 -4360 1562 217 6 19 chr4 136291510 136291823 -66036524 + AluJo SINE Alu 1 309 -3 418 184 28 111 chr4 136291823 136291932 -66036415 + L1MCa LINE L1 2124 2260 -4224 2189 139 11 6 chr4 136291937 136292296 -66036051 + MER47A DNA MER2_type 6 366 0 1145 141 10 0 chr4 136292305 136292503 -66035844 - Tigger1 DNA MER2_type -2 2416 2217 2481 212 37 19 chr4 136292517 136293136 -66035211 + L1M3f LINE L1 1251 1880 -4685 4449 211 53 42 chr4 136293251 136293704 -66034643 + L1M3f LINE L1 2151 2597 -4968 2003 139 38 19 chr4 136293704 136294070 -66034277 - THE1C LTR MaLR -2 373 1 4449 211 53 42 chr4 136294070 136295413 -66032934 + L1M3f LINE L1 2597 3965 -3600 7321 197 48 81 chr4 136295537 136296900 -66031447 + L1MA4 LINE L1 3307 4714 -3005 2531 91 72 20 chr4 136296900 136296939 -66031408 - MSTA LTR MaLR 0 428 392 2367 94 0 0 chr4 136296939 136297237 -66031110 + AluSp SINE Alu 1 298 -15 2531 91 72 20 chr4 136297237 136297602 -66030745 - MSTA LTR MaLR -36 392 3 7321 197 48 81 chr4 136297602 136300264 -66028083 + L1MA4 LINE L1 4714 7205 -514 315 224 0 0 chr4 136300267 136300343 -66028004 + (TA)n Simple_repeat Simple_repeat 1 76 0 2462 133 31 51 chr4 136300366 136300879 -66027468 + L1MA4 LINE L1 7206 7708 -11 11530 121 39 28 chr4 136300882 136302902 -66025445 - Tigger1 DNA MER2_type -184 2234 193 503 200 0 0 chr4 136302904 136302984 -66025363 + AluJ/FLAM SINE Alu 1 80 -232 23853 21 1 0 chr4 136303099 136307002 -66021345 + L1PA2 LINE L1 2273 6179 0 2306 84 3 0 chr4 136307049 136307354 -66020993 - AluSp SINE Alu 0 306 1 352 245 0 64 chr4 136308033 136308127 -66020220 - MIR SINE MIR -159 103 16 255 296 153 10 chr4 136309049 136309147 -66019200 + MIR SINE MIR 151 262 0 202 130 19 19 chr4 136310088 136310130 -66018217 + (TTATG)n Simple_repeat Simple_repeat 2 46 -9 1806 141 7 7 chr4 136310130 136310420 -66017927 - AluSx SINE Alu -22 290 1 202 130 19 19 chr4 136310420 136310431 -66017916 + (TTATG)n Simple_repeat Simple_repeat 45 55 0 21 0 0 0 chr4 136310500 136310521 -66017826 + AT_rich Low_complexity Low_complexity 1 21 0 2059 117 3 10 chr4 136310714 136311013 -66017334 - AluSx SINE Alu -15 297 1 227 231 19 0 chr4 136311227 136311279 -66017068 + GA-rich Low_complexity Low_complexity 3 55 0 32 0 0 0 chr4 136311382 136311414 -66016933 + AT_rich Low_complexity Low_complexity 1 32 0 771 143 8 0 chr4 136311821 136311940 -66016407 + FLAM_C SINE Alu 6 125 -18 244 259 0 0 chr4 136311985 136312043 -66016304 + Charlie2a DNA MER1_type 200 257 -2525 345 251 101 10 chr4 136312184 136312391 -66015956 + Charlie2a DNA MER1_type 874 1099 -1763 365 261 278 31 chr4 136312421 136312777 -66015570 + MLT1J1 LTR MaLR 1 444 -2 * 773 196 109 10 chr4 136312777 136313291 -66015056 + Charlie2a DNA MER1_type 2262 2854 -8 201 304 134 18 chr4 136313314 136313426 -66014921 + MIR SINE MIR 24 148 -114 640 270 99 57 chr4 136314295 136314680 -66013667 + L1MC4a LINE L1 5530 5930 -1878 23 0 0 0 chr4 136314819 136314842 -66013505 + AT_rich Low_complexity Low_complexity 1 23 0 332 267 73 93 chr4 136316842 136317089 -66011258 - MIR SINE MIR -20 242 1 804 190 18 0 chr4 136317327 136317490 -66010857 + L1MB4 LINE L1 4679 4844 -1302 5560 103 46 135 chr4 136317490 136317569 -66010778 + Tigger3b DNA MER2_type 1 85 -2943 2476 75 0 3 chr4 136317569 136317874 -66010473 + AluSq SINE Alu 1 304 -9 5560 103 46 135 chr4 136317874 136319137 -66009210 + Tigger3b DNA MER2_type 85 1224 -7 3060 181 37 53 chr4 136319142 136320537 -66007810 + L1MB4 LINE L1 4843 6179 -1 549 332 36 5 chr4 136320738 136320958 -66007389 - MIR SINE MIR -15 247 21 2216 115 7 0 chr4 136321000 136321296 -66007051 + AluSq SINE Alu 1 298 -15 258 191 0 0 chr4 136321301 136321343 -66007004 + MIR SINE MIR 151 192 -70 2255 92 7 0 chr4 136321551 136321843 -66006504 - AluSq SINE Alu -19 294 1 2307 95 3 0 chr4 136322441 136322735 -66005612 - AluSq SINE Alu -18 295 1 27 0 0 0 chr4 136322912 136322939 -66005408 + AT_rich Low_complexity Low_complexity 1 27 0 971 132 0 0 chr4 136323318 136323447 -66004900 - FRAM SINE Alu -52 124 1 227 237 17 0 chr4 136323511 136323570 -66004777 - MLT1L LTR MaLR -1 614 555 235 246 45 0 chr4 136323580 136323690 -66004657 - L1M4 LINE L1 -3092 3054 2940 1987 137 23 3 chr4 136323916 136324216 -66004131 + AluSx SINE Alu 1 306 -6 2235 100 3 23 chr4 136324244 136324554 -66003793 - AluSg SINE Alu -5 305 2 700 154 6 39 chr4 136324555 136324711 -66003636 + L1MC3 LINE L1 7635 7785 0 251 172 134 112 chr4 136324921 136325055 -66003292 + L2 LINE L2 1922 2058 -1256 578 198 0 0 chr4 136325088 136325199 -66003148 - Charlie4a DNA MER1_type -21 487 377 279 79 0 0 chr4 136325212 136325250 -66003097 + (TG)n Simple_repeat Simple_repeat 2 39 0 234 0 0 0 chr4 136325315 136325341 -66003006 + (TA)n Simple_repeat Simple_repeat 1 26 0 409 217 51 13 chr4 136325502 136325659 -66002688 - Charlie4a DNA MER1_type -109 399 237 2314 109 0 0 chr4 136325677 136325970 -66002377 - AluSg SINE Alu -17 293 1 1147 229 25 25 chr4 136325982 136326305 -66002042 + L1ME2 LINE L1 3943 4265 -1881 * 2342 226 100 21 chr4 136326299 136327108 -66001239 + L1ME2 LINE L1 5283 6155 -9 1732 206 0 6 chr4 136327244 136327555 -66000792 + AluJb SINE Alu 1 309 -3 366 260 48 143 chr4 136329169 136329232 -65999115 - L2 LINE L2 -8 3264 3197 1407 139 45 139 chr4 136329232 136329635 -65998712 - MLT1A1 LTR MaLR 0 365 1 366 260 48 143 chr4 136329635 136329963 -65998384 - L2 LINE L2 -75 3197 2910 234 0 0 0 chr4 136330238 136330264 -65998083 + (TGGG)n Simple_repeat Simple_repeat 3 28 0 252 290 0 0 chr4 136331208 136331270 -65997077 - L2 LINE L2 -5 3267 3206 192 97 0 0 chr4 136331601 136331632 -65996715 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 330 298 20 53 chr4 136332033 136332184 -65996163 + L1MC4a LINE L1 5792 5937 -1871 1151 228 17 4 chr4 136332192 136332424 -65995923 - MIR SINE MIR -1 261 27 2811 62 6 3 chr4 136332476 136332830 -65995517 + THE1A LTR MaLR 1 355 0 1737 129 3 77 chr4 136333348 136333719 -65994628 - MER4A LTR ERV1 0 664 263 602 102 10 10 chr4 136333719 136333817 -65994530 - MER4A LTR ERV1 -566 98 1 15885 98 51 20 chr4 136333828 136334053 -65994294 - MER4A-int LTR ERV1 -5 6593 6376 1856 148 50 3 chr4 136334053 136334350 -65993997 + AluSx SINE Alu 1 311 -1 15885 98 51 20 chr4 136334350 136336798 -65991549 - MER4A-int LTR ERV1 -222 6376 3837 4228 105 177 135 chr4 136336797 136338596 -65989751 - MER4A-int LTR ERV1 -2917 3681 1764 * 4136 104 36 16 chr4 136338612 136339012 -65989335 - MER4A-int LTR ERV1 -5570 1188 797 2236 116 0 0 chr4 136339012 136339313 -65989034 + AluSc SINE Alu 2 302 -7 4136 104 36 16 chr4 136339313 136339828 -65988519 - MER4A-int LTR ERV1 -5961 797 200 1153 229 95 3 chr4 136339883 136340167 -65988180 - MER4A-int LTR ERV1 -4163 2168 1859 2433 111 170 38 chr4 136340332 136340898 -65987449 - MER4A-int LTR ERV1 -5912 686 1 1734 100 155 92 chr4 136340901 136341281 -65987066 - MER4A LTR ERV1 0 664 261 658 101 0 10 chr4 136341281 136341380 -65986967 - MER4A LTR ERV1 -566 98 1 3817 132 25 45 chr4 136341594 136342320 -65986027 + MER50 LTR ERV1 1 711 -23 231 36 0 0 chr4 136342348 136342376 -65985971 + (CA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr4 136342707 136342729 -65985618 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 136342756 136342777 -65985570 + AT_rich Low_complexity Low_complexity 1 21 0 2011 153 50 57 chr4 136343118 136343575 -65984772 - MLT2C2 LTR ERVL -8 456 3 21 0 0 0 chr4 136344970 136344991 -65983356 + AT_rich Low_complexity Low_complexity 1 21 0 2295 108 3 0 chr4 136345608 136345915 -65982432 + AluSp SINE Alu 2 309 -4 186 348 9 54 chr4 136346146 136346258 -65982089 - L2 LINE L2 -4 3268 3162 704 202 213 72 chr4 136347069 136347278 -65981069 + LTR2 LTR ERV1 1 267 -223 186 43 0 0 chr4 136347278 136347301 -65981046 + (TTCTG)n Simple_repeat Simple_repeat 1 23 0 704 202 213 72 chr4 136347301 136347346 -65981001 + LTR2 LTR ERV1 267 304 -186 1364 163 4 29 chr4 136347347 136347624 -65980723 + LTR2B LTR ERV1 221 490 0 9786 64 19 40 chr4 136347624 136349074 -65979273 + Harlequin LTR ERV1 1 1419 -5477 26380 62 4 3 chr4 136349094 136352430 -65975917 + Harlequin LTR ERV1 1584 4926 -1970 5607 134 30 43 chr4 136352430 136353516 -65974831 - MER11C LTR ERVK 0 1071 1 26380 62 4 3 chr4 136353516 136353661 -65974686 + Harlequin LTR ERV1 4926 5069 -1827 5487 71 12 0 chr4 136353652 136354395 -65973952 + Harlequin LTR ERV1 6135 6886 -10 * 1727 164 106 50 chr4 136354397 136354861 -65973486 + LTR2B LTR ERV1 1 490 0 300 309 109 67 chr4 136356090 136356255 -65972092 - MER5A DNA MER1_type 0 189 7 225 108 0 0 chr4 136356270 136356307 -65972040 + (TG)n Simple_repeat Simple_repeat 1 37 0 266 135 39 0 chr4 136358158 136358210 -65970137 + GA-rich Low_complexity Low_complexity 2 55 0 334 262 16 48 chr4 136358830 136358956 -65969391 + MER5B DNA MER1_type 1 122 -56 497 179 143 9 chr4 136359281 136359393 -65968954 - FLAM_A SINE Alu -6 127 1 207 170 0 0 chr4 136359747 136359794 -65968553 + A-rich Low_complexity Low_complexity 1 47 0 253 326 189 0 chr4 136360175 136360270 -65968077 + L2 LINE L2 3153 3265 -7 304 301 29 19 chr4 136360543 136360646 -65967701 + L2 LINE L2 3204 3307 -6 1980 125 48 0 chr4 136361416 136361711 -65966636 + AluSx SINE Alu 1 309 -3 24 32 0 0 chr4 136362590 136362621 -65965726 + AT_rich Low_complexity Low_complexity 1 31 0 1812 173 3 3 chr4 136362899 136363199 -65965148 - AluJo SINE Alu -12 300 1 1752 122 75 29 chr4 136363518 136363796 -65964551 - AluSx SINE Alu -21 291 1 1821 85 0 4 chr4 136364096 136364372 -65963975 + AluY SINE Alu 49 323 0 22 0 0 0 chr4 136364568 136364590 -65963757 + AT_rich Low_complexity Low_complexity 1 22 0 446 289 118 76 chr4 136365457 136365493 -65962854 + L1MC/D LINE L1 4915 4948 -1198 1886 113 0 11 chr4 136365493 136365758 -65962589 + AluSg SINE Alu 32 293 -17 446 289 118 76 chr4 136365758 136366025 -65962322 + L1MC/D LINE L1 4948 5231 -915 2390 92 3 0 chr4 136366100 136366403 -65961944 + AluSp SINE Alu 1 304 -9 887 268 75 26 chr4 136366407 136366869 -65961478 + L1MC/D LINE L1 5324 5819 -302 251 234 63 36 chr4 136367395 136367506 -65960841 + L1MEd LINE L1 1308 1421 -4951 207 0 0 0 chr4 136367526 136367549 -65960798 + (A)n Simple_repeat Simple_repeat 1 23 0 421 306 75 49 chr4 136367590 136367789 -65960558 + HAL1 LINE L1 1369 1578 -929 1653 166 35 11 chr4 136367789 136368073 -65960274 - AluJo SINE Alu -21 291 1 421 306 75 49 chr4 136368073 136368138 -65960209 + HAL1 LINE L1 1578 1640 -867 454 268 43 7 chr4 136368413 136368551 -65959796 + MER91B DNA MER1_type 36 178 -12 417 328 116 10 chr4 136368604 136368946 -65959401 + L1MEd LINE L1 2186 2566 -3816 236 291 119 104 chr4 136369054 136369322 -65959025 + L2 LINE L2 2962 3233 -80 23 33 0 0 chr4 136370307 136370337 -65958010 + AT_rich Low_complexity Low_complexity 1 30 0 241 333 0 15 chr4 136370419 136370485 -65957862 + MIR SINE MIR 34 98 -164 268 163 0 0 chr4 136370617 136370660 -65957687 + tRNA-Met-e tRNA tRNA 1 43 -32 544 158 122 0 chr4 136370671 136370810 -65957537 + MER3 DNA MER1_type 49 204 -5 2184 107 7 13 chr4 136370833 136371133 -65957214 - AluSx SINE Alu -14 298 1 1039 97 0 0 chr4 136371150 136371284 -65957063 - AluSq/x SINE Alu -178 134 1 219 361 56 0 chr4 136371455 136371563 -65956784 + MIR SINE MIR 84 197 -65 2060 110 0 17 chr4 136372302 136372602 -65955745 - AluSx SINE Alu -17 295 1 342 304 139 51 chr4 136374716 136375048 -65953299 + L1M2 LINE L1 526 886 -5963 742 141 225 0 chr4 136376308 136376521 -65951826 - MER58B DNA MER1_type 0 341 81 372 244 39 24 chr4 136376626 136376753 -65951594 + MER94 DNA DNA 6 134 0 297 302 10 0 chr4 136376934 136377030 -65951317 - MLT1L LTR MaLR -366 249 153 347 267 87 20 chr4 136377055 136377205 -65951142 - MER20B DNA MER1_type -620 163 4 228 227 53 40 chr4 136377291 136377366 -65950981 - MLT1L LTR MaLR -538 77 2 183 353 15 0 chr4 136377542 136377610 -65950737 + L2 LINE L2 2600 2668 -646 21 0 0 0 chr4 136378113 136378134 -65950213 + AT_rich Low_complexity Low_complexity 1 21 0 483 286 130 5 chr4 136378278 136378470 -65949877 + MLT1I LTR MaLR 3 218 -191 521 281 183 38 chr4 136378475 136378951 -65949396 - MLT1H1 LTR MaLR 0 555 11 1393 216 126 18 chr4 136380340 136380653 -65947694 - Charlie2 DNA MER1_type -72 2790 2512 2032 116 32 7 chr4 136380653 136380937 -65947410 + AluSq SINE Alu 1 291 -22 1393 216 126 18 chr4 136380937 136381178 -65947169 - Charlie2 DNA MER1_type -350 2512 2176 2487 240 122 27 chr4 136381179 136382151 -65946196 - Charlie2b DNA MER1_type -1526 1256 192 365 310 28 0 chr4 136382253 136382395 -65945952 - Charlie2b DNA MER1_type -2635 147 2 1317 295 57 34 chr4 136383904 136384732 -65943615 + L2 LINE L2 2462 3313 0 340 294 59 39 chr4 136385113 136385266 -65943081 - L2 LINE L2 0 3313 3158 234 0 0 0 chr4 136385982 136386008 -65942339 + (CCA)n Simple_repeat Simple_repeat 1 26 0 437 259 214 15 chr4 136386125 136386326 -65942021 - MIR SINE MIR -21 241 1 309 282 117 10 chr4 136386343 136386446 -65941901 - L1MC/D LINE L1 -1982 5826 5713 369 294 45 106 chr4 136386450 136387011 -65941336 - L1MC/D LINE L1 -478 5643 5114 1999 147 16 57 chr4 136387956 136388397 -65939950 - L1MA7 LINE L1 -1 6290 5868 1395 111 0 0 chr4 136388423 136388631 -65939716 - L1MA7 LINE L1 -528 5763 5556 21 36 0 0 chr4 136389072 136389100 -65939247 + AT_rich Low_complexity Low_complexity 1 28 0 477 0 0 0 chr4 136389127 136389180 -65939167 + (TG)n Simple_repeat Simple_repeat 1 53 0 711 205 32 19 chr4 136389460 136389616 -65938731 + MER5A DNA MER1_type 2 159 -30 494 187 19 19 chr4 136389639 136389746 -65938601 - Charlie8 DNA MER1_type -2225 192 86 497 30 15 0 chr4 136389924 136389991 -65938356 + (GA)n Simple_repeat Simple_repeat 2 69 0 358 312 31 53 chr4 136390083 136390316 -65938031 - MIR3 SINE MIR -21 241 14 21 0 0 0 chr4 136391346 136391367 -65936980 + AT_rich Low_complexity Low_complexity 1 21 0 194 204 0 19 chr4 136392178 136392232 -65936115 + (TA)n Simple_repeat Simple_repeat 1 53 0 185 65 32 0 chr4 136392237 136392268 -65936079 + (CA)n Simple_repeat Simple_repeat 2 33 0 619 224 68 0 chr4 136392269 136392430 -65935917 - MIR SINE MIR -74 188 17 714 302 65 29 chr4 136392554 136392799 -65935548 - MIR SINE MIR -1 261 8 293 336 109 23 chr4 136393360 136393580 -65934767 - L2 LINE L2 -16 3256 3018 2275 115 0 0 chr4 136393726 136394022 -65934325 - AluSq SINE Alu -17 296 1 323 247 0 13 chr4 136394022 136394099 -65934248 - Tigger3(Golem) DNA MER2_type -2953 76 1 24 32 0 0 chr4 136394252 136394283 -65934064 + AT_rich Low_complexity Low_complexity 1 31 0 1941 131 3 39 chr4 136395932 136396237 -65932110 - AluSx SINE Alu -18 294 1 259 301 113 32 chr4 136396547 136396682 -65931665 + MER5A DNA MER1_type 29 184 -5 261 0 0 0 chr4 136396977 136397006 -65931341 + (TG)n Simple_repeat Simple_repeat 1 29 0 1078 62 0 0 chr4 136398199 136398329 -65930018 - AluSg/x SINE Alu -6 304 175 353 344 55 0 chr4 136398906 136399089 -65929258 - MIR SINE MIR -25 237 45 386 271 192 13 chr4 136399426 136399577 -65928770 - MIR3 SINE MIR -15 193 16 374 216 45 36 chr4 136399611 136399722 -65928625 - L1ME2 LINE L1 -40 6124 6013 2354 95 0 0 chr4 136400139 136400434 -65927913 + AluSx SINE Alu 1 295 -17 279 0 0 0 chr4 136400632 136400663 -65927684 + (TG)n Simple_repeat Simple_repeat 1 31 0 * 303 49 0 0 chr4 136400662 136400703 -65927644 + (GA)n Simple_repeat Simple_repeat 1 41 0 26 74 0 0 chr4 136401059 136401113 -65927234 + AT_rich Low_complexity Low_complexity 1 54 0 2484 73 0 0 chr4 136401204 136401504 -65926843 - AluY SINE Alu -11 300 1 1663 250 43 78 chr4 136401554 136401778 -65926569 - L1MC4 LINE L1 -1 8041 7811 1859 154 7 10 chr4 136401778 136402071 -65926276 - AluJb SINE Alu -20 292 1 1663 250 43 78 chr4 136402071 136402384 -65925963 - L1MC4 LINE L1 -231 7811 7543 1612 171 44 7 chr4 136402384 136402659 -65925688 - AluJo SINE Alu -25 287 3 1663 250 43 78 chr4 136402659 136402975 -65925372 - L1MC4 LINE L1 -499 7543 7217 198 296 60 111 chr4 136403193 136403392 -65924955 + L2 LINE L2 3072 3260 -12 4121 186 26 67 chr4 136404188 136404471 -65923876 - L1MC3 LINE L1 -1 7784 7491 1339 181 118 81 chr4 136404471 136404853 -65923494 + MSTD LTR MaLR 1 396 0 4121 186 26 67 chr4 136404853 136405200 -65923147 - L1MC3 LINE L1 -294 7491 7131 226 182 45 136 chr4 136405200 136405310 -65923037 - MLT1F1 LTR MaLR -433 134 35 4121 186 26 67 chr4 136405310 136405684 -65922663 - L1MC3 LINE L1 -654 7131 6716 418 231 0 0 chr4 136405800 136405878 -65922469 + MER81 DNA DNA 1 78 -36 493 328 47 13 chr4 136405902 136406134 -65922213 - MLT1K LTR MaLR -3 585 346 559 300 148 23 chr4 136406182 136406485 -65921862 - MER102b DNA MER1_type 0 341 1 756 277 43 36 chr4 136406612 136406865 -65921482 - MIR SINE MIR 0 262 8 2338 84 3 6 chr4 136406914 136407225 -65921122 + AluY SINE Alu 1 310 -1 514 250 21 36 chr4 136407256 136407396 -65920951 - MIR3 SINE MIR -15 193 56 515 210 19 12 chr4 136407710 136407721 -65920626 + CT-rich Low_complexity Low_complexity 2 11 -153 279 0 0 0 chr4 136407721 136407752 -65920595 + (TTCTC)n Simple_repeat Simple_repeat 1 31 0 515 210 19 12 chr4 136407752 136407902 -65920445 + CT-rich Low_complexity Low_complexity 11 164 0 1776 154 7 4 chr4 136407904 136408177 -65920170 - AluJb SINE Alu -38 274 1 210 37 0 0 chr4 136408374 136408401 -65919946 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1862 110 20 0 chr4 136408406 136408661 -65919686 - AluSx SINE Alu -52 260 1 342 0 0 0 chr4 136409119 136409157 -65919190 + (TG)n Simple_repeat Simple_repeat 1 38 0 247 254 0 0 chr4 136409733 136409788 -65918559 + CT-rich Low_complexity Low_complexity 2 56 0 230 182 23 0 chr4 136409788 136409832 -65918515 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 203 0 0 36 chr4 136410130 136410158 -65918189 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 3340 315 67 45 chr4 136410563 136410892 -65917455 + L2 LINE L2 80 400 -2914 4034 147 17 16 chr4 136410892 136411524 -65916823 + MER41B LTR ERV1 1 633 -2 3340 315 67 45 chr4 136411524 136413071 -65915276 + L2 LINE L2 400 1997 -1317 684 286 83 9 chr4 136413471 136413637 -65914710 + MIR SINE MIR 18 205 -57 1783 122 54 7 chr4 136413637 136413915 -65914432 + AluJo SINE Alu 1 291 -21 684 286 83 9 chr4 136413915 136413965 -65914382 + MIR SINE MIR 205 250 -12 611 328 56 64 chr4 136414164 136414664 -65913683 - LTR67 LTR ERVL 0 557 62 316 262 48 32 chr4 136414741 136414867 -65913480 + MLT1K LTR MaLR 434 561 -27 502 343 56 22 chr4 136414918 136415288 -65913059 + L2 LINE L2 2611 3001 -271 405 205 0 0 chr4 136415353 136415431 -65912916 + L2 LINE L2 3189 3266 -47 2292 128 64 73 chr4 136415558 136415994 -65912353 + MSTB1 LTR MaLR 1 432 0 4974 164 28 16 chr4 136415994 136416985 -65911362 + L1MB3 LINE L1 5179 6181 -2 487 205 115 16 chr4 136417017 136417139 -65911208 + L2 LINE L2 3180 3313 0 186 258 52 62 chr4 136417246 136417343 -65911004 + MIR SINE MIR 96 191 -71 884 280 55 88 chr4 136418684 136419209 -65909138 - MLT1K LTR MaLR 0 588 81 270 176 0 0 chr4 136419832 136419883 -65908464 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 292 71 36 0 chr4 136420702 136420758 -65907589 + (CAA)n Simple_repeat Simple_repeat 2 59 0 480 300 145 6 chr4 136420909 136421317 -65907030 - L2 LINE L2 -140 3173 2713 700 331 43 22 chr4 136422065 136422388 -65905959 + LTR16C LTR ERVL 158 487 -4 357 311 45 23 chr4 136422388 136422565 -65905782 - L1ME LINE L1 -315 5806 5626 261 0 0 0 chr4 136422602 136422631 -65905716 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1863 149 0 3 chr4 136422633 136422915 -65905432 - AluJo SINE Alu -31 281 1 1584 171 7 11 chr4 136423818 136424087 -65904260 - AluSx SINE Alu -8 304 37 390 202 18 97 chr4 136424700 136424728 -65903619 + L2 LINE L2 3208 3237 -76 2335 105 0 6 chr4 136424728 136425043 -65903304 - AluSq SINE Alu 0 313 1 390 202 18 97 chr4 136425043 136425128 -65903219 + L2 LINE L2 3237 3312 -1 373 302 26 17 chr4 136425692 136425808 -65902539 + MIR3 SINE MIR 85 201 -7 820 150 0 0 chr4 136426579 136426706 -65901641 + FLAM_C SINE Alu 11 137 -6 2291 104 0 22 chr4 136427813 136428130 -65900217 + AluSg SINE Alu 1 310 0 2051 136 168 27 chr4 136428484 136428859 -65899488 + MSTA LTR MaLR 1 428 0 1809 130 4 0 chr4 136429201 136429454 -65898893 - AluSx SINE Alu -58 254 1 804 209 45 108 chr4 136429608 136429943 -65898404 - HAL1 LINE L1 -193 2314 2001 980 186 149 0 chr4 136429952 136430146 -65898201 + MER58A DNA MER1_type 1 223 -1 2192 244 44 42 chr4 136430148 136430592 -65897755 - HAL1 LINE L1 -501 2006 1559 1833 160 10 19 chr4 136430592 136430899 -65897448 - AluJo SINE Alu -6 306 3 2192 244 44 42 chr4 136430899 136431186 -65897161 - HAL1 LINE L1 -948 1559 1274 1066 125 87 33 chr4 136431229 136431413 -65896934 - Tigger2a DNA MER2_type -240 194 1 8052 31 0 11 chr4 136431566 136432871 -65895476 - L1PA5 LINE L1 -4 6150 4852 204 158 0 0 chr4 136432931 136432969 -65895378 + (ATG)n Simple_repeat Simple_repeat 3 40 0 212 121 207 17 chr4 136432980 136433038 -65895309 + MIR SINE MIR 169 237 -25 413 255 47 19 chr4 136433736 136433842 -65894505 + L2 LINE L2 3199 3307 -6 2245 126 0 0 chr4 136434038 136434340 -65894007 - AluSx SINE Alu -10 302 1 244 164 0 0 chr4 136434541 136434596 -65893751 - L1MB4 LINE L1 0 6180 6126 1371 193 40 25 chr4 136434666 136434940 -65893407 - AluJo SINE Alu -34 278 1 3526 173 27 19 chr4 136434941 136435618 -65892729 - L1MB5 LINE L1 -33 6141 5460 2492 71 0 0 chr4 136436463 136436757 -65891590 + AluSq SINE Alu 1 294 -19 208 191 24 0 chr4 136437300 136437342 -65891005 - L2 LINE L2 -9 3304 3262 2486 217 12 27 chr4 136437546 136438181 -65890166 + LTR27 LTR ERV1 3 661 -128 1796 201 6 12 chr4 136438157 136438490 -65889857 + LTR28 LTR ERV1 684 1014 -6 * 270 363 36 45 chr4 136438501 136438724 -65889623 - L2 LINE L2 -373 2941 2721 2804 139 78 43 chr4 136438844 136439399 -65888948 + MER4B LTR ERV1 1 574 -36 228 274 69 29 chr4 136439427 136439529 -65888818 + MER5A DNA MER1_type 84 189 0 225 294 179 34 chr4 136439529 136439749 -65888598 - L2 LINE L2 -623 2691 2438 24 0 0 0 chr4 136439805 136439829 -65888518 + AT_rich Low_complexity Low_complexity 1 24 0 546 174 174 0 chr4 136440387 136440502 -65887845 + MLT1J2 LTR MaLR 67 201 -249 274 239 83 55 chr4 136440568 136440677 -65887670 + MLT1J2 LTR MaLR 339 450 0 2366 90 0 3 chr4 136440741 136441040 -65887307 + AluSg SINE Alu 1 298 -12 429 307 26 0 chr4 136441229 136441343 -65887004 + MIR SINE MIR 124 240 -22 426 196 87 80 chr4 136441858 136441996 -65886351 + MIR3 SINE MIR 40 178 -30 447 111 49 49 chr4 136442177 136442258 -65886089 - L1MB8 LINE L1 0 6178 6098 859 264 107 44 chr4 136443288 136443791 -65884556 - L1ME4a LINE L1 -9 6112 5578 872 244 160 30 chr4 136443924 136444256 -65884091 + LTR16C LTR ERVL 117 491 0 2501 167 58 44 chr4 136444279 136444777 -65883570 + MLT1D LTR MaLR 1 505 0 425 287 67 40 chr4 136445097 136445247 -65883100 - MER5A DNA MER1_type -31 158 5 221 349 12 12 chr4 136446171 136446257 -65882090 - MIR SINE MIR -70 192 107 392 329 138 14 chr4 136446725 136447008 -65881339 + L3b LINE CR1 1149 1466 -117 818 163 6 50 chr4 136447111 136447271 -65881076 - L1MD3 LINE L1 -10 7985 7833 290 265 0 0 chr4 136447617 136447685 -65880662 + L2 LINE L2 3239 3306 -7 2230 103 0 17 chr4 136447685 136447986 -65880361 + AluSq SINE Alu 1 296 -17 482 261 113 77 chr4 136448014 136448351 -65879996 + L2 LINE L2 2965 3313 0 25 0 0 0 chr4 136448773 136448798 -65879549 + AT_rich Low_complexity Low_complexity 1 25 0 2324 180 39 49 chr4 136449166 136449676 -65878671 + MLT1D LTR MaLR 1 505 0 276 325 135 35 chr4 136450199 136450683 -65877664 - L2 LINE L2 -219 3053 2513 1938 175 25 19 chr4 136450986 136451346 -65877001 - MLT1A1 LTR MaLR 0 365 4 201 364 133 0 chr4 136451934 136452107 -65876240 - L2 LINE L2 -2499 815 620 1084 201 146 50 chr4 136452540 136452958 -65875389 - MLT1C LTR MaLR -9 458 1 200 386 43 21 chr4 136453943 136454083 -65874264 + MIR3 SINE MIR 16 158 -50 1243 151 151 52 chr4 136454412 136454683 -65873664 + AluJb SINE Alu 1 298 -14 622 289 15 62 chr4 136455124 136455384 -65872963 + MIR SINE MIR 12 259 -3 293 315 0 11 chr4 136455385 136455474 -65872873 + MIR SINE MIR 159 246 -16 2857 77 6 0 chr4 136455525 136455878 -65872469 - THE1A LTR MaLR 0 355 1 12712 83 8 1 chr4 136455878 136457446 -65870901 - THE1A-int LTR MaLR 0 1580 1 2900 73 3 3 chr4 136457446 136457801 -65870546 - THE1A LTR MaLR 0 355 1 547 233 28 57 chr4 136457825 136458001 -65870346 - MIR SINE MIR -89 173 3 554 345 81 5 chr4 136458040 136458269 -65870078 + MIR SINE MIR 12 254 -8 555 213 264 15 chr4 136459361 136459558 -65868789 + MIR SINE MIR 16 261 -1 314 379 50 7 chr4 136459916 136460056 -65868291 - L2 LINE L2 0 3272 3127 2127 100 7 0 chr4 136460140 136460532 -65867815 - AluSq SINE Alu 0 394 1 790 283 61 20 chr4 136461708 136461955 -65866392 - MIR SINE MIR 0 262 6 181 256 23 0 chr4 136463155 136463198 -65865149 + MIR SINE MIR 83 126 -82 599 300 23 5 chr4 136463217 136463432 -65864915 - MIR SINE MIR -10 252 36 357 113 25 138 chr4 136463462 136463542 -65864805 - L1MA5 LINE L1 -23 6277 6207 2011 121 54 85 chr4 136463542 136463929 -65864418 - THE1C LTR MaLR 0 375 1 9658 117 73 11 chr4 136463929 136465415 -65862932 - THE1C-int LTR MaLR 0 1580 3 1642 132 181 28 chr4 136465417 136465742 -65862605 - THE1C LTR MaLR 0 375 1 324 191 15 0 chr4 136465743 136465811 -65862536 - L1MA5 LINE L1 -99 6201 6133 35 41 0 0 chr4 136466759 136466808 -65861539 + AT_rich Low_complexity Low_complexity 1 49 0 240 260 90 50 chr4 136467045 136467145 -65861202 - L2 LINE L2 0 3272 3169 188 217 17 33 chr4 136467771 136467831 -65860516 - MER5A DNA MER1_type -63 126 68 239 333 69 0 chr4 136468484 136468571 -65859776 + MIR SINE MIR 83 175 -87 188 283 119 31 chr4 136468955 136469114 -65859233 + MIR SINE MIR 64 236 -26 534 63 0 158 chr4 136470191 136470286 -65858061 + MADE1 DNA Mariner 1 80 0 2196 111 0 20 chr4 136470380 136470686 -65857661 + AluSx SINE Alu 1 300 -12 1402 188 48 7 chr4 136470793 136471064 -65857283 + AluJo SINE Alu 1 282 -30 249 57 0 0 chr4 136471067 136471102 -65857245 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 939 199 0 6 chr4 136471102 136471278 -65857069 + FRAM SINE Alu 1 169 -7 441 263 32 119 chr4 136471322 136471573 -65856774 - L2 LINE L2 0 3272 3044 664 313 44 0 chr4 136472714 136472941 -65855406 + MIR SINE MIR 23 259 -3 392 235 311 25 chr4 136473125 136473321 -65855026 + MIR SINE MIR 2 253 -9 467 335 22 22 chr4 136473739 136473918 -65854429 - MER5A DNA MER1_type -4 185 7 918 132 231 28 chr4 136474880 136475062 -65853285 - MER20 DNA MER1_type 0 219 1 673 211 105 0 chr4 136475121 136475273 -65853074 - MIR SINE MIR -14 248 81 512 199 32 39 chr4 136476640 136476796 -65851551 - L1ME4a LINE L1 0 6121 5967 429 20 0 0 chr4 136477006 136477056 -65851291 + (TG)n Simple_repeat Simple_repeat 2 51 0 628 267 79 0 chr4 136477983 136478185 -65850162 - MIR SINE MIR -24 238 21 294 195 218 35 chr4 136478207 136478294 -65850053 + MIR SINE MIR 39 141 -67 294 313 50 20 chr4 136479739 136479838 -65848509 - L2 LINE L2 -9 3304 3203 840 158 0 0 chr4 136479968 136480088 -65848259 + FLAM_C SINE Alu 1 120 -23 184 308 56 47 chr4 136481164 136481271 -65847076 + L2 LINE L2 2935 3042 -230 1957 111 68 4 chr4 136481486 136481765 -65846582 + AluSx SINE Alu 1 297 -15 346 318 153 13 chr4 136482761 136482997 -65845350 - HAL1 LINE L1 -14 2493 2225 298 276 26 58 chr4 136483107 136483263 -65845084 - HAL1b LINE L1 -452 896 746 4243 153 14 1 chr4 136483785 136484454 -65843893 - L1PA16 LINE L1 -5 6161 5485 6396 91 15 5 chr4 136484459 136485396 -65842951 - L1PB1 LINE L1 -7 6860 5916 2441 137 8 6 chr4 136485421 136485786 -65842561 - L1PB1 LINE L1 -3 6864 6499 288 200 0 0 chr4 136485786 136485846 -65842501 + (TATATG)n Simple_repeat Simple_repeat 2 61 0 15500 185 32 5 chr4 136485858 136490796 -65837551 - L1PB1 LINE L1 -360 6507 1436 3394 208 85 34 chr4 136490798 136491782 -65836565 - L1PB1 LINE L1 -5821 1042 8 18750 153 40 9 chr4 136491798 136492065 -65836282 - L1PB1 LINE L1 -939 5923 5666 551 111 0 12 chr4 136492065 136492146 -65836201 + MADE1 DNA Mariner 1 80 0 18750 153 40 9 chr4 136492146 136492679 -65835668 - L1PB1 LINE L1 -1196 5666 5151 234 0 0 0 chr4 136492679 136492705 -65835642 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 18750 153 40 9 chr4 136492705 136494697 -65833650 - L1PB1 LINE L1 -1711 5151 3223 2294 82 0 4 chr4 136494697 136494998 -65833349 - AluY SINE Alu 0 300 1 18750 153 40 9 chr4 136494998 136496920 -65831427 - L1PB1 LINE L1 -3639 3223 992 2269 122 3 0 chr4 136496920 136497232 -65831115 + AluSp SINE Alu 1 313 0 18750 153 40 9 chr4 136497232 136498253 -65830094 - L1PB1 LINE L1 -5870 992 4 15537 213 23 21 chr4 136498258 136502703 -65825644 - L1P4 LINE L1 -674 6194 1636 240 35 0 0 chr4 136502703 136502732 -65825615 + (TTCTCC)n Simple_repeat Simple_repeat 3 31 0 15537 213 23 21 chr4 136502732 136502942 -65825405 - L1P4 LINE L1 -5232 1636 1428 227 293 0 0 chr4 136502950 136503008 -65825339 - L1P4 LINE L1 -5318 1531 1474 1101 255 12 43 chr4 136503383 136503708 -65824639 - L1P4 LINE L1 -6083 766 452 324 365 35 9 chr4 136503740 136503855 -65824492 - L1M2 LINE L1 -6066 783 666 260 310 18 26 chr4 136503997 136504110 -65824237 - L1M2 LINE L1 -6072 777 666 1086 296 44 37 chr4 136504205 136504610 -65823737 - L1M2 LINE L1 -6399 450 43 242 261 149 0 chr4 136504844 136504922 -65823425 - MIR SINE MIR -92 116 38 346 286 36 27 chr4 136504970 136505082 -65823265 - L3b LINE CR1 -187 1396 1284 185 224 82 20 chr4 136506287 136506336 -65822011 - L2 LINE L2 0 3313 3262 515 253 89 50 chr4 136507633 136507835 -65820512 + MIR SINE MIR 47 256 -6 3938 79 42 0 chr4 136509152 136509658 -65818689 - L1PA12 LINE L1 0 6168 5642 772 185 37 0 chr4 136509823 136509985 -65818362 + L1P LINE L1 2386 2553 -3593 2082 212 20 75 chr4 136509985 136510571 -65817776 - MLT2B3 LTR ERVL 0 554 1 2885 171 12 19 chr4 136510571 136511156 -65817191 - HERVL-B3 LTR ERVL 0 5654 5074 249 250 38 0 chr4 136511297 136511377 -65816970 + CT-rich Low_complexity Low_complexity 1 83 0 543 251 92 58 chr4 136512026 136512233 -65816114 + MER102a DNA MER1_type 77 290 -40 1125 225 127 30 chr4 136512646 136513015 -65815332 + MLT1I LTR MaLR 5 409 0 771 285 52 20 chr4 136514420 136514669 -65813678 - MIR SINE MIR 0 262 6 384 244 115 62 chr4 136517142 136517383 -65810964 - MIR SINE MIR 0 262 14 222 320 29 19 chr4 136517379 136517482 -65810865 + L2 LINE L2 2716 2819 -495 * 332 264 110 25 chr4 136519513 136519676 -65808671 + L1 LINE L1 3084 3260 -2886 234 202 34 50 chr4 136519687 136519806 -65808541 + (CAAA)n Simple_repeat Simple_repeat 3 119 0 318 228 17 44 chr4 136519884 136520116 -65808231 + A-rich Low_complexity Low_complexity 1 225 0 1882 158 0 10 chr4 136520747 136521050 -65807297 + AluSg SINE Alu 3 302 -8 1426 145 0 5 chr4 136521953 136522167 -65806180 + AluJo SINE Alu 1 213 -99 228 378 162 0 chr4 136523174 136523285 -65805062 + L2 LINE L2 3137 3265 -7 299 301 29 19 chr4 136523558 136523661 -65804686 + L2 LINE L2 3204 3307 -6 248 182 30 45 chr4 136524233 136524299 -65804048 - L1ME LINE L1 -304 5817 5753 1948 127 48 0 chr4 136524433 136524725 -65803622 + AluSx SINE Alu 1 306 -6 202 245 39 20 chr4 136525152 136525254 -65803093 + (CACAA)n Simple_repeat Simple_repeat 5 108 0 213 182 0 0 chr4 136525363 136525418 -65802929 + T-rich Low_complexity Low_complexity 1 55 0 1615 182 63 12 chr4 136525591 136526019 -65802328 - L1P LINE L1 -744 5424 4975 236 262 49 0 chr4 136526041 136526102 -65802245 + L2 LINE L2 3203 3266 -6 21 82 0 0 chr4 136527217 136527266 -65801081 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr4 136527283 136527308 -65801039 + AT_rich Low_complexity Low_complexity 1 25 0 188 221 88 44 chr4 136528833 136528901 -65799446 - L3b LINE CR1 -216 1367 1297 228 35 0 0 chr4 136529161 136529190 -65799157 + (TG)n Simple_repeat Simple_repeat 2 30 0 195 69 0 0 chr4 136529311 136529340 -65799007 + (A)n Simple_repeat Simple_repeat 1 29 0 305 191 29 29 chr4 136530005 136530073 -65798274 + L1M2a LINE L1 1984 2051 -5117 2509 79 0 0 chr4 136531081 136531384 -65796963 + AluY SINE Alu 1 303 -8 1578 150 0 0 chr4 136531559 136531799 -65796548 + L1MA9 LINE L1 5554 5793 -519 1427 243 42 34 chr4 136531968 136532442 -65795905 + L1MA9 LINE L1 5795 6272 -40 723 232 124 46 chr4 136532744 136532936 -65795411 + MLT1G1 LTR MaLR 335 551 -44 4660 128 33 8 chr4 136532936 136533654 -65794693 - L1MA7 LINE L1 -6 6285 5550 723 232 124 46 chr4 136533654 136533702 -65794645 + MLT1G1 LTR MaLR 551 594 -1 319 244 33 0 chr4 136533703 136533793 -65794554 + L2 LINE L2 2013 2105 -1209 508 198 10 83 chr4 136533794 136533986 -65794361 - L1MC5 LINE L1 -29 7932 7755 325 217 96 0 chr4 136533987 136534070 -65794277 + L2 LINE L2 2153 2243 -1071 920 244 9 22 chr4 136534085 136534315 -65794032 + MIR SINE MIR 5 231 -31 566 232 109 47 chr4 136534336 136534612 -65793735 + L2 LINE L2 2240 2532 -782 204 149 15 45 chr4 136534893 136534960 -65793387 + (CACAA)n Simple_repeat Simple_repeat 3 67 0 7893 177 34 5 chr4 136535083 136536786 -65791561 + L1P4 LINE L1 3749 5491 -674 18699 108 66 11 chr4 136536791 136537812 -65790535 + L1PBa LINE L1 4 967 -5895 2269 122 3 0 chr4 136537812 136538124 -65790223 - AluSp SINE Alu 0 313 1 18699 108 66 11 chr4 136538124 136540052 -65788295 + L1PBa LINE L1 967 3112 -3750 1921 140 0 20 chr4 136540053 136540353 -65787994 + AluSx SINE Alu 7 300 -12 1402 188 48 7 chr4 136540460 136540731 -65787616 + AluJo SINE Alu 1 282 -30 249 57 0 0 chr4 136540734 136540769 -65787578 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 939 199 0 6 chr4 136540769 136540945 -65787402 + FRAM SINE Alu 1 169 -7 441 263 32 119 chr4 136540989 136541240 -65787107 - L2 LINE L2 0 3272 3044 664 313 44 0 chr4 136542381 136542608 -65785739 + MIR SINE MIR 23 259 -3 392 235 311 25 chr4 136542792 136542988 -65785359 + MIR SINE MIR 2 253 -9 467 335 22 22 chr4 136543406 136543585 -65784762 - MER5A DNA MER1_type -4 185 7 918 132 231 28 chr4 136544547 136544729 -65783618 - MER20 DNA MER1_type 0 219 1 673 211 105 0 chr4 136544788 136544940 -65783407 - MIR SINE MIR -14 248 81 512 199 32 39 chr4 136546307 136546463 -65781884 - L1ME4a LINE L1 0 6121 5967 429 20 0 0 chr4 136546673 136546723 -65781624 + (TG)n Simple_repeat Simple_repeat 2 51 0 628 267 79 0 chr4 136547661 136547863 -65780484 - MIR SINE MIR -24 238 21 294 195 218 35 chr4 136547885 136547972 -65780375 + MIR SINE MIR 39 141 -67 294 313 50 20 chr4 136549421 136549520 -65778827 - L2 LINE L2 -9 3304 3203 840 158 0 0 chr4 136549650 136549770 -65778577 + FLAM_C SINE Alu 1 120 -23 10012 137 15 48 chr4 136551164 136551665 -65776682 + MSTA-int LTR MaLR 5 521 -1059 2132 151 0 0 chr4 136551665 136551970 -65776377 + AluSx SINE Alu 1 305 -7 10012 137 15 48 chr4 136551970 136553098 -65775249 + MSTA-int LTR MaLR 521 1580 0 2158 145 135 5 chr4 136553098 136553477 -65774870 + MSTA LTR MaLR 1 428 0 10199 206 40 13 chr4 136553478 136555574 -65772773 + L1 LINE L1 2550 4720 -1426 296 24 24 0 chr4 136555574 136555615 -65772732 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 10199 206 40 13 chr4 136555615 136555923 -65772424 + L1 LINE L1 4720 5018 -1128 * 21139 50 3 1 chr4 136555920 136558868 -65769479 + L1P LINE L1 8 2960 -3186 4757 154 20 0 chr4 136558973 136560235 -65768112 - L1P4 LINE L1 -496 5669 4380 21 0 0 0 chr4 136560240 136560261 -65768086 + AT_rich Low_complexity Low_complexity 1 21 0 6249 127 12 16 chr4 136560261 136561575 -65766772 - L1MA2 LINE L1 -4 6300 4992 3995 132 44 15 chr4 136561566 136562257 -65766090 - L1PA12 LINE L1 -1 6171 5397 * 2304 118 3 0 chr4 136562257 136562563 -65765784 - AluSg SINE Alu -3 307 1 3995 132 44 15 chr4 136562563 136562999 -65765348 - L1PA12 LINE L1 -775 5397 4975 241 262 49 0 chr4 136563021 136563082 -65765265 + L2 LINE L2 3203 3266 -6 441 310 81 6 chr4 136564038 136564212 -65764135 + MIR SINE MIR 2 188 -74 2638 187 47 14 chr4 136564261 136564818 -65763529 + MER90 LTR ERV1 1 575 0 350 269 46 9 chr4 136564881 136564989 -65763358 + MIR3 SINE MIR 85 196 -12 362 296 10 10 chr4 136565802 136565900 -65762447 + MER81 DNA DNA 1 98 -16 30 27 0 0 chr4 136566819 136566856 -65761491 + AT_rich Low_complexity Low_complexity 1 37 0 413 243 195 18 chr4 136566907 136567179 -65761168 - L1ME4a LINE L1 -24 6097 5778 995 235 80 31 chr4 136567572 136568147 -65760200 + LTR41 LTR ERVL 10 668 -105 363 157 98 0 chr4 136568163 136568265 -65760082 - L1PA13 LINE L1 -6 6157 6046 18833 33 1 0 chr4 136568497 136570891 -65757456 + L1P LINE L1 2741 5137 -1009 228 35 0 0 chr4 136571842 136571871 -65756476 + (CA)n Simple_repeat Simple_repeat 2 30 0 190 221 88 44 chr4 136572132 136572200 -65756147 + L3b LINE CR1 1297 1367 -216 44 80 0 0 chr4 136573727 136573827 -65754520 + AT_rich Low_complexity Low_complexity 1 100 0 210 71 0 0 chr4 136573879 136573907 -65754440 + (TA)n Simple_repeat Simple_repeat 1 28 0 1113 210 64 11 chr4 136574211 136574691 -65753656 + MLT1E LTR MaLR 2 593 0 235 71 48 0 chr4 136575741 136575783 -65752564 + (TG)n Simple_repeat Simple_repeat 1 44 0 804 281 43 16 chr4 136575875 136576128 -65752219 + MIR SINE MIR 2 261 -1 1756 219 90 11 chr4 136576276 136576733 -65751614 + L2 LINE L2 2137 2629 -685 21 36 0 0 chr4 136576738 136576766 -65751581 + AT_rich Low_complexity Low_complexity 1 28 0 3265 227 116 48 chr4 136576794 136578103 -65750244 - L1MC4 LINE L1 -182 7860 6463 1703 236 47 25 chr4 136578333 136578982 -65749365 + L2 LINE L2 2654 3308 -5 253 230 23 46 chr4 136578995 136579082 -65749265 - MIR SINE MIR -109 153 69 268 255 20 20 chr4 136579520 136579622 -65748725 + L1M4 LINE L1 5685 5786 -392 487 234 0 28 chr4 136579696 136579803 -65748544 - MIR SINE MIR -1 261 158 4386 203 47 8 chr4 136579858 136581109 -65747238 + L1PA13 LINE L1 1259 2565 -4232 444 193 36 21 chr4 136581701 136581841 -65746506 - L1ME4a LINE L1 -13 6108 5967 429 20 0 0 chr4 136582051 136582101 -65746246 + (TG)n Simple_repeat Simple_repeat 2 51 0 629 267 79 0 chr4 136583028 136583230 -65745117 - MIR SINE MIR -24 238 21 301 195 218 35 chr4 136583252 136583339 -65745008 + MIR SINE MIR 39 141 -67 299 313 50 20 chr4 136584784 136584883 -65743464 - L2 LINE L2 -9 3304 3203 702 115 0 2 chr4 136585013 136585256 -65743091 + AluSx SINE Alu 1 296 -13 6577 196 25 24 chr4 136586880 136587550 -65740797 - L1PA15 LINE L1 0 6165 5497 2472 88 0 0 chr4 136587550 136587858 -65740489 - AluY SINE Alu -3 308 1 6577 196 25 24 chr4 136587858 136589483 -65738864 - L1PA15 LINE L1 -668 5497 3863 196 322 169 23 chr4 136590144 136590321 -65738026 + MIR SINE MIR 48 250 -12 580 260 105 41 chr4 136590884 136591103 -65737244 - MIR SINE MIR 0 262 30 255 93 0 0 chr4 136591841 136591884 -65736463 + (CAGT)n Simple_repeat Simple_repeat 4 46 0 224 288 25 25 chr4 136591884 136591964 -65736383 - L2 LINE L2 -13 3300 3221 332 293 53 69 chr4 136592306 136592494 -65735853 + L1MEd LINE L1 274 458 -5661 359 224 212 37 chr4 136592546 136592787 -65735560 + L1MEd LINE L1 550 832 -5287 676 280 113 35 chr4 136593163 136593595 -65734752 - MLT1J LTR MaLR -35 476 11 407 324 112 28 chr4 136593929 136594179 -65734168 + L2 LINE L2 2437 2707 -607 973 238 134 60 chr4 136594195 136594790 -65733557 - L2 LINE L2 -18 3295 2665 566 108 12 0 chr4 136594793 136594876 -65733471 + AluJ/FLAM SINE Alu 1 84 -228 1260 213 109 30 chr4 136594903 136595297 -65733050 - L2 LINE L2 -650 2664 2240 953 239 9 22 chr4 136595318 136595548 -65732799 - MIR SINE MIR -31 231 5 326 217 96 0 chr4 136595563 136595646 -65732701 - L2 LINE L2 -1071 2243 2153 427 200 12 61 chr4 136595647 136595812 -65732535 + L1MC5 LINE L1 7755 7911 -50 313 260 31 0 chr4 136595834 136595930 -65732417 - L2 LINE L2 -1203 2111 2013 605 228 114 57 chr4 136595931 136595983 -65732364 - MLT1G1 LTR MaLR -1 594 546 4320 128 31 8 chr4 136595983 136596697 -65731650 + L1MA7 LINE L1 5556 6285 -6 605 228 114 57 chr4 136596697 136596890 -65731457 - MLT1G1 LTR MaLR -49 546 335 1501 241 42 25 chr4 136597193 136597665 -65730682 - L1MA9 LINE L1 -38 6274 5795 1456 150 0 0 chr4 136597834 136598074 -65730273 - L1MA9 LINE L1 -519 5793 5554 2281 96 0 3 chr4 136598249 136598551 -65729796 - AluSg SINE Alu -8 302 2 557 295 129 54 chr4 136598746 136598842 -65729505 + L2 LINE L2 2916 3003 -269 836 157 60 93 chr4 136598842 136598974 -65729373 + MER3 DNA MER1_type 1 136 -73 239 0 32 0 chr4 136598974 136599005 -65729342 + (TTG)n Simple_repeat Simple_repeat 3 34 0 2179 78 48 0 chr4 136599014 136599307 -65729040 - AluSg SINE Alu -3 307 1 836 157 60 93 chr4 136599307 136599380 -65728967 + MER3 DNA MER1_type 144 209 0 557 295 129 54 chr4 136599380 136599615 -65728732 + L2 LINE L2 3003 3272 0 8914 213 19 5 chr4 136601074 136602745 -65725602 + L1 LINE L1 2703 4348 -1798 234 0 0 0 chr4 136602745 136602771 -65725576 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 8914 213 19 5 chr4 136602771 136603304 -65725043 + L1 LINE L1 4348 4942 -1204 509 111 0 12 chr4 136603304 136603385 -65724962 - MADE1 DNA Mariner 0 80 1 406 103 26 0 chr4 136603408 136603486 -65724861 + (TAGA)n Simple_repeat Simple_repeat 4 83 0 2135 208 83 52 chr4 136603486 136603531 -65724816 - MLT2F LTR ERVL -66 597 555 1976 115 7 46 chr4 136603531 136603836 -65724511 - AluSq SINE Alu -14 299 7 2135 208 83 52 chr4 136603836 136604367 -65723980 - MLT2F LTR ERVL -108 555 3 21 0 0 0 chr4 136604732 136604753 -65723594 + AT_rich Low_complexity Low_complexity 1 21 0 472 308 5 0 chr4 136604884 136605069 -65723278 + L1M4 LINE L1 2640 2825 -3321 348 267 61 64 chr4 136605216 136605591 -65722756 + L1M4 LINE L1 2875 3248 -2898 885 108 16 0 chr4 136605626 136605755 -65722592 + AluSg/x SINE Alu 165 295 -15 277 286 97 22 chr4 136605767 136606211 -65722136 + L1M4 LINE L1 3297 3773 -2373 28 86 0 0 chr4 136606230 136606300 -65722047 + AT_rich Low_complexity Low_complexity 1 70 0 270 330 54 44 chr4 136606636 136606839 -65721508 + L2 LINE L2 1331 1535 -1779 2457 53 3 7 chr4 136607016 136607316 -65721031 - AluY SINE Alu -12 299 1 2381 69 7 0 chr4 136608125 136608416 -65719931 - AluY SINE Alu -18 293 1 310 303 41 87 chr4 136608717 136609169 -65719178 + L2 LINE L2 2599 3078 -194 1774 164 3 20 chr4 136609591 136609889 -65718458 - AluJo SINE Alu -14 298 6 199 259 161 54 chr4 136609909 136610021 -65718326 - L3 LINE CR1 -938 639 516 695 33 0 0 chr4 136610857 136610947 -65717400 - AluSp/q SINE Alu -6 307 218 757 244 30 49 chr4 136611032 136611251 -65717096 + MIR SINE MIR 2 217 -45 2163 122 3 10 chr4 136611251 136611554 -65716793 + AluSx SINE Alu 1 301 -11 757 244 30 49 chr4 136611554 136611600 -65716747 + MIR SINE MIR 217 262 0 855 256 44 14 chr4 136612637 136612930 -65715417 + MER46C DNA MER2_type 3 304 -34 811 236 24 0 chr4 136613441 136613606 -65714741 + MIR SINE MIR 30 198 -64 196 304 25 25 chr4 136613632 136613711 -65714636 + MIR SINE MIR 183 261 -1 181 336 89 20 chr4 136615263 136615409 -65712938 - L2 LINE L2 -433 2881 2726 391 244 122 61 chr4 136615411 136615657 -65712690 + MIR SINE MIR 2 262 0 2168 99 0 40 chr4 136617198 136617501 -65710846 - AluSc SINE Alu -18 291 1 509 254 18 55 chr4 136617639 136617721 -65710626 - MIR SINE MIR -74 188 113 2902 145 94 6 chr4 136617721 136617761 -65710586 - MLT2B3 LTR ERVL 0 554 519 408 88 0 0 chr4 136617761 136617818 -65710529 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 2902 145 94 6 chr4 136617818 136618286 -65710061 - MLT2B3 LTR ERVL -35 519 1 509 254 18 55 chr4 136618286 136618368 -65709979 - MIR SINE MIR -149 113 30 699 286 59 13 chr4 136619786 136620024 -65708323 - MIR SINE MIR -11 251 3 1623 161 50 52 chr4 136620079 136620463 -65707884 + MLT1B LTR MaLR 8 390 0 188 295 27 107 chr4 136620630 136620662 -65707685 - L3 LINE CR1 -12 1565 1532 240 222 0 19 chr4 136620662 136620716 -65707631 - MER5C DNA MER1_type 0 324 272 188 295 27 107 chr4 136620716 136620779 -65707568 - L3 LINE CR1 -45 1532 1429 681 216 46 83 chr4 136620844 136621062 -65707285 + MER63A DNA MER1_type 1 210 0 266 241 69 11 chr4 136621075 136621162 -65707185 - MER5C DNA MER1_type -208 116 25 329 286 109 25 chr4 136622206 136622325 -65706022 - L2 LINE L2 0 3272 3144 250 291 0 0 chr4 136622397 136622452 -65705895 - L2 LINE L2 -18 3295 3241 634 256 49 0 chr4 136623013 136623177 -65705170 + MIR SINE MIR 32 203 -59 870 184 60 35 chr4 136623814 136624015 -65704332 + MER63A DNA MER1_type 4 209 -1 439 238 99 0 chr4 136624667 136624791 -65703556 - MIR SINE MIR -62 146 37 1563 154 94 7 chr4 136624940 136625226 -65703121 - AluSx SINE Alu -1 311 1 22 70 0 0 chr4 136625602 136625645 -65702702 + AT_rich Low_complexity Low_complexity 1 43 0 247 267 30 74 chr4 136625889 136626024 -65702323 + MLT1I LTR MaLR 139 267 -142 354 200 43 0 chr4 136626127 136626197 -65702150 - MLT1I LTR MaLR -258 151 79 255 244 30 23 chr4 136628031 136628162 -65700185 + A-rich Low_complexity Low_complexity 3 134 0 211 118 13 53 chr4 136628169 136628245 -65700102 + (CAAAAA)n Simple_repeat Simple_repeat 3 75 0 3931 207 52 32 chr4 136628350 136629471 -65698876 + L1MC4a LINE L1 6666 7808 0 4234 123 79 0 chr4 136630370 136631067 -65697280 - LTR1B LTR ERV1 -74 752 1 3934 232 44 6 chr4 136631069 136631954 -65696393 - L1M2c LINE L1 -5870 919 1 * 8448 150 16 12 chr4 136631952 136632776 -65695571 + L1MA5 LINE L1 3552 4371 -1929 1871 134 50 34 chr4 136632776 136633134 -65695213 + THE1B LTR MaLR 1 364 0 8448 150 16 12 chr4 136633134 136635040 -65693307 + L1MA5 LINE L1 4371 6293 -7 1642 215 127 23 chr4 136635051 136635572 -65692775 + MER21B LTR ERV1 250 824 -39 2659 102 65 5 chr4 136637077 136637479 -65690868 - MSTA LTR MaLR 0 428 3 211 146 18 55 chr4 136637576 136637631 -65690716 + GA-rich Low_complexity Low_complexity 4 56 0 240 236 167 0 chr4 136637873 136637945 -65690402 + MIR SINE MIR 55 138 -70 189 375 14 0 chr4 136638172 136638244 -65690103 - MIR SINE MIR -105 103 31 651 251 83 31 chr4 136639302 136639525 -65688822 + MIR SINE MIR 20 262 0 570 264 26 26 chr4 136641706 136641975 -65686372 + L1M4 LINE L1 2302 2570 -3576 702 111 0 2 chr4 136642966 136643209 -65685138 + AluSx SINE Alu 1 299 -13 5925 164 22 20 chr4 136644833 136645503 -65682844 - L1PA15 LINE L1 0 6165 5498 2472 88 0 0 chr4 136645503 136645811 -65682536 - AluY SINE Alu -3 308 1 5925 164 22 20 chr4 136645811 136647348 -65680999 - L1PA15 LINE L1 -667 5498 3952 3882 236 83 41 chr4 136648054 136648513 -65679834 - L1MC4a LINE L1 -892 5254 4816 261 0 0 0 chr4 136648513 136648542 -65679805 + (TG)n Simple_repeat Simple_repeat 1 29 0 3882 236 83 41 chr4 136648542 136649701 -65678646 - L1MC4a LINE L1 -1330 4816 3707 1937 150 0 0 chr4 136649701 136649987 -65678360 + AluSx SINE Alu 1 286 -26 248 0 31 0 chr4 136649990 136650022 -65678325 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 3882 236 83 41 chr4 136650022 136650429 -65677918 - L1MC4a LINE L1 -1266 4880 4491 645 289 114 48 chr4 136650448 136651768 -65676579 - L1MEd LINE L1 -1443 4939 3533 885 108 16 0 chr4 136651780 136651909 -65676438 - AluSg/x SINE Alu -15 295 165 348 267 61 64 chr4 136651944 136652319 -65676028 - L1MEd LINE L1 -2898 3484 3111 472 308 5 0 chr4 136652466 136652651 -65675696 - L1MEd LINE L1 -3321 3061 2876 21 0 0 0 chr4 136652782 136652803 -65675544 + AT_rich Low_complexity Low_complexity 1 21 0 2148 206 83 52 chr4 136653168 136653699 -65674648 + MLT2F LTR ERVL 3 555 -108 1976 115 7 46 chr4 136653699 136654004 -65674343 + AluSq SINE Alu 7 299 -14 2148 206 83 52 chr4 136654004 136654049 -65674298 + MLT2F LTR ERVL 555 597 -66 406 103 26 0 chr4 136654049 136654127 -65674220 + (TCTA)n Simple_repeat Simple_repeat 4 83 0 1625 261 65 25 chr4 136654347 136654872 -65673475 + MLT1H1 LTR MaLR 3 548 -7 486 98 0 0 chr4 136654879 136654961 -65673386 + (TA)n Simple_repeat Simple_repeat 1 82 0 2265 58 45 3 chr4 136655483 136655775 -65672572 - AluY SINE Alu -7 304 1 513 239 23 15 chr4 136655907 136656037 -65672310 + LTR33A LTR ERVL 1 131 -392 458 277 194 4 chr4 136656073 136656326 -65672021 + LTR33A LTR ERVL 221 521 -2 230 216 20 0 chr4 136656326 136656377 -65671970 + (TTA)n Simple_repeat Simple_repeat 3 54 0 361 254 24 79 chr4 136657079 136657157 -65671190 - L1MEd LINE L1 -4683 1701 1631 1512 210 84 3 chr4 136657157 136657514 -65670833 + MLT1B LTR MaLR 5 390 0 361 254 24 79 chr4 136657514 136657561 -65670786 - L1MEd LINE L1 -4753 1631 1583 714 254 67 22 chr4 136657648 136657963 -65670384 - L1MEd LINE L1 -4862 1510 1182 359 317 14 53 chr4 136657945 136658153 -65670194 - L1MEd LINE L1 -5697 675 476 * 2148 93 0 77 chr4 136658158 136658469 -65669878 + AluSg SINE Alu 1 287 -23 398 220 15 23 chr4 136658544 136658676 -65669671 - L1MEd LINE L1 -5940 432 302 23 0 0 0 chr4 136660022 136660045 -65668302 + AT_rich Low_complexity Low_complexity 1 23 0 517 231 60 60 chr4 136660306 136660488 -65667859 - MIR SINE MIR -2 260 79 186 43 0 0 chr4 136661525 136661548 -65666799 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 445 258 119 115 chr4 136662186 136662245 -65666102 - MLT1H LTR MaLR -18 531 474 1317 203 80 34 chr4 136662245 136662571 -65665776 - MER58B DNA MER1_type 0 341 1 445 258 119 115 chr4 136662571 136662991 -65665356 - MLT1H LTR MaLR -75 474 50 930 193 0 12 chr4 136663046 136663227 -65665120 - AluJb SINE Alu 0 301 123 1209 202 16 23 chr4 136663230 136663488 -65664859 - AluJo SINE Alu -16 296 41 188 176 0 0 chr4 136663659 136663693 -65664654 - L2 LINE L2 -327 2945 2912 235 242 16 16 chr4 136664186 136664248 -65664099 + CT-rich Low_complexity Low_complexity 3 64 0 21 36 0 0 chr4 136664590 136664618 -65663729 + AT_rich Low_complexity Low_complexity 1 28 0 688 309 177 24 chr4 136665140 136665938 -65662409 + L2 LINE L2 2174 3144 -169 2324 98 13 0 chr4 136665938 136666243 -65662104 - AluSx SINE Alu -2 310 2 688 309 177 24 chr4 136666243 136666443 -65661904 + L2 LINE L2 3144 3312 -1 390 292 9 9 chr4 136666628 136666741 -65661606 - L2 LINE L2 -9 3304 3192 2482 120 52 39 chr4 136666962 136667404 -65660943 + L1PA16 LINE L1 5718 6165 -1 2350 101 3 3 chr4 136668164 136668470 -65659877 + AluSx SINE Alu 2 307 -5 860 237 135 29 chr4 136669794 136670078 -65658269 - L1ME LINE L1 -408 5762 5441 2183 168 9 0 chr4 136670078 136670423 -65657924 + MER7A DNA MER2_type 1 346 0 860 237 135 29 chr4 136670423 136670450 -65657897 - L1ME LINE L1 -729 5441 5418 * 1477 224 43 30 chr4 136670444 136670842 -65657505 + L1ME3A LINE L1 5759 6161 -9 251 323 90 8 chr4 136670846 136670979 -65657368 - MER5A DNA MER1_type -45 144 1 332 297 126 50 chr4 136672299 136672538 -65655809 - L2 LINE L2 -6 3266 3010 1994 146 30 9 chr4 136672547 136672882 -65655465 - L1PB4 LINE L1 -1 6155 5814 34179 98 9 54 chr4 136672906 136679348 -65648999 - L1PA7 LINE L1 -2 6152 12 1140 118 9 75 chr4 136679337 136679620 -65648727 - L1PA16 LINE L1 -313 5853 5612 * 22 35 0 0 chr4 136680450 136680479 -65647868 + AT_rich Low_complexity Low_complexity 1 29 0 2285 228 75 12 chr4 136680490 136681140 -65647207 - Charlie7 DNA MER1_type -280 2332 1642 251 254 58 65 chr4 136681187 136681325 -65647022 - L2 LINE L2 -814 2500 2364 3871 135 63 77 chr4 136681525 136682320 -65646027 - LTR1 LTR ERV1 0 785 2 667 257 105 44 chr4 136682415 136682757 -65645590 - L2 LINE L2 0 3313 2951 1706 175 55 34 chr4 136683152 136683534 -65644813 - MLT1D LTR MaLR -2 503 114 408 175 0 0 chr4 136683648 136683711 -65644636 - MLT1D LTR MaLR -442 63 1 218 303 32 77 chr4 136684778 136684933 -65643414 - MIR SINE MIR 0 262 115 679 305 99 34 chr4 136685244 136685403 -65642944 + L2 LINE L2 2392 2539 -775 1916 186 31 3 chr4 136685403 136685758 -65642589 - MLT1A1 LTR MaLR 0 365 1 679 305 99 34 chr4 136685758 136686074 -65642273 + L2 LINE L2 2539 2898 -416 319 246 189 23 chr4 136686170 136686345 -65642002 + L2 LINE L2 3106 3309 -4 273 57 0 0 chr4 136688208 136688243 -65640104 + (CA)n Simple_repeat Simple_repeat 2 36 0 230 252 58 58 chr4 136688259 136688362 -65639985 - L1ME3A LINE L1 -105 6065 5963 25 51 0 0 chr4 136688401 136688440 -65639907 + AT_rich Low_complexity Low_complexity 1 39 0 1638 147 49 25 chr4 136688453 136688738 -65639609 + AluJo SINE Alu 1 292 -20 918 284 87 19 chr4 136688750 136689580 -65638767 - L1ME3A LINE L1 -231 5939 5045 1873 119 8 0 chr4 136690035 136690296 -65638051 - AluSx SINE Alu -15 297 35 2386 96 0 0 chr4 136690697 136690998 -65637349 + AluSq SINE Alu 13 313 0 190 338 122 14 chr4 136691213 136691361 -65636986 - MIR SINE MIR -95 167 4 21 0 0 0 chr4 136691736 136691757 -65636590 + AT_rich Low_complexity Low_complexity 1 21 0 200 350 57 14 chr4 136692786 136692926 -65635421 + L2 LINE L2 2948 3093 -179 409 279 95 28 chr4 136693305 136693484 -65634863 - MIR SINE MIR -41 221 31 22 0 0 0 chr4 136693830 136693852 -65634495 + AT_rich Low_complexity Low_complexity 1 22 0 506 203 196 7 chr4 136693918 136694061 -65634286 + MER97c DNA MER1_type? 15 184 -906 2181 164 93 30 chr4 136694280 136694751 -65633596 - MLT1D LTR MaLR 0 505 5 229 317 58 10 chr4 136694763 136694867 -65633480 + MIR SINE MIR 23 131 -77 486 33 0 0 chr4 136696032 136696092 -65632255 + (TC)n Simple_repeat Simple_repeat 2 61 0 411 73 0 0 chr4 136697526 136697581 -65630766 + (TG)n Simple_repeat Simple_repeat 2 56 0 384 301 96 0 chr4 136698405 136698541 -65629806 + MIR3 SINE MIR 41 189 -19 21 0 0 0 chr4 136699686 136699707 -65628640 + AT_rich Low_complexity Low_complexity 1 21 0 1662 176 32 0 chr4 136700281 136700560 -65627787 - AluJo SINE Alu -19 293 6 2121 131 0 10 chr4 136701134 136701439 -65626908 + AluSx SINE Alu 1 302 -10 250 395 22 0 chr4 136702590 136702724 -65625623 - MIR3 SINE MIR -16 192 56 1669 134 23 53 chr4 136702985 136703284 -65625063 + AluJo SINE Alu 1 290 -22 180 0 0 0 chr4 136703817 136703837 -65624510 + (A)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr4 136704711 136704732 -65623615 + AT_rich Low_complexity Low_complexity 1 21 0 266 0 29 0 chr4 136705837 136705871 -65622476 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 2153 112 0 0 chr4 136705871 136706149 -65622198 - AluSg SINE Alu -32 278 1 265 292 54 39 chr4 136706343 136706473 -65621874 + LTR67 LTR ERVL 426 557 0 2371 94 7 0 chr4 136706486 136706783 -65621564 - AluSc SINE Alu -10 299 1 294 300 62 38 chr4 136706890 136707050 -65621297 - LTR67 LTR ERVL -7 550 387 2211 191 51 16 chr4 136708121 136708571 -65619776 + MER31B LTR ERV1 1 466 0 793 251 49 4 chr4 136709807 136710054 -65618293 + MIR SINE MIR 1 258 -4 203 295 33 0 chr4 136710830 136710891 -65617456 - L2 LINE L2 0 3272 3210 * 298 330 121 59 chr4 136710841 136710904 -65617443 - MIR SINE MIR -6 256 198 1457 228 142 33 chr4 136710904 136711356 -65616991 - MLT1D LTR MaLR 0 505 5 298 330 121 59 chr4 136711356 136711531 -65616816 - MIR SINE MIR -64 198 3 336 271 133 18 chr4 136711579 136711745 -65616602 - MIR SINE MIR -29 233 49 199 234 26 78 chr4 136712126 136712203 -65616144 - MIR SINE MIR -71 191 119 366 115 0 0 chr4 136712389 136712450 -65615897 + (TC)n Simple_repeat Simple_repeat 2 62 0 342 0 0 0 chr4 136712450 136712488 -65615859 + (CA)n Simple_repeat Simple_repeat 1 38 0 351 0 0 0 chr4 136713180 136713219 -65615128 + (CA)n Simple_repeat Simple_repeat 1 39 0 293 329 39 117 chr4 136713969 136714404 -65613943 + L2 LINE L2 2871 3271 -1 1887 176 0 0 chr4 136714408 136714710 -65613637 + AluJb SINE Alu 1 302 -10 189 0 0 0 chr4 136714753 136714774 -65613573 + (TTAAA)n Simple_repeat Simple_repeat 4 24 0 27 49 0 0 chr4 136715133 136715174 -65613173 + AT_rich Low_complexity Low_complexity 1 41 0 458 218 100 24 chr4 136717264 136717452 -65610895 - MIR SINE MIR -51 211 9 2222 100 3 0 chr4 136718227 136718518 -65609829 - AluSp SINE Alu -21 292 1 2493 61 0 3 chr4 136719055 136719365 -65608982 + AluY SINE Alu 1 309 -2 28 71 0 0 chr4 136719410 136719466 -65608881 + AT_rich Low_complexity Low_complexity 1 56 0 752 210 64 58 chr4 136719486 136719918 -65608429 - MER34 LTR ERV1 -115 627 1 1268 236 10 80 chr4 136719998 136720327 -65608020 - MLT1A2 LTR MaLR 0 374 76 1353 98 85 58 chr4 136720327 136720458 -65607889 + MER30 DNA MER1_type 1 142 -88 2097 141 0 0 chr4 136720458 136720763 -65607584 - AluSx SINE Alu -2 310 6 1353 98 85 58 chr4 136720763 136720855 -65607492 + MER30 DNA MER1_type 142 230 0 1268 236 10 80 chr4 136720855 136720927 -65607420 - MLT1A2 LTR MaLR -298 76 1 335 289 92 0 chr4 136722879 136723031 -65605316 - L1P5 LINE L1 -338 5813 5652 2461 68 10 0 chr4 136723104 136723400 -65604947 - AluSp SINE Alu -14 299 1 21 0 0 0 chr4 136723448 136723469 -65604878 + AT_rich Low_complexity Low_complexity 1 21 0 556 280 185 17 chr4 136723603 136724178 -65604169 - L1ME3A LINE L1 -221 5949 5286 295 141 94 0 chr4 136724196 136724260 -65604087 - MER116 DNA Mariner 0 80 11 302 335 35 5 chr4 136724274 136724474 -65603873 - L1ME3A LINE L1 -880 5266 5061 357 273 68 34 chr4 136724606 136724811 -65603536 - L1MC/D LINE L1 -733 5429 5255 1757 169 0 31 chr4 136724954 136725273 -65603074 - AluJb SINE Alu -1 311 3 2222 112 0 0 chr4 136726031 136726326 -65602021 - AluSx SINE Alu -17 295 1 436 313 120 0 chr4 136727008 136727158 -65601189 + MIR3 SINE MIR 30 197 -11 2303 77 0 74 chr4 136728226 136728564 -65599783 + AluSp SINE Alu 1 313 0 1447 139 14 59 chr4 136728604 136728929 -65599418 + AluJo SINE Alu 17 312 0 255 294 120 11 chr4 136730361 136730453 -65597894 + L2 LINE L2 3212 3313 0 1994 162 49 8 chr4 136731351 136731716 -65596631 - L1MA9 LINE L1 -30 6282 5903 642 184 47 133 chr4 136732165 136732420 -65595927 + L2 LINE L2 3077 3309 -4 970 243 44 4 chr4 136733023 136733274 -65595073 - MIR SINE MIR 0 262 2 214 318 0 34 chr4 136734328 136734416 -65593931 + CT-rich Low_complexity Low_complexity 5 89 0 313 236 43 79 chr4 136735120 136735260 -65593087 - MER112 DNA MER1_type -46 214 80 769 265 85 41 chr4 136735323 136735640 -65592707 + MLT1J2 LTR MaLR 67 397 -53 241 304 0 38 chr4 136735693 136735772 -65592575 - MER112 DNA MER1_type -179 81 6 617 263 38 27 chr4 136735784 136735970 -65592377 + MER5A DNA MER1_type 1 188 -1 296 357 105 31 chr4 136736157 136736443 -65591904 + L2 LINE L2 207 513 -2801 1096 243 118 31 chr4 136736452 136736708 -65591639 - MLT1L LTR MaLR 0 615 314 2035 204 83 31 chr4 136736708 136736969 -65591378 - MLT1D LTR MaLR 0 505 259 423 0 0 0 chr4 136736969 136737016 -65591331 + (TG)n Simple_repeat Simple_repeat 2 48 0 2035 204 83 31 chr4 136737016 136737234 -65591113 - MLT1D LTR MaLR -246 259 1 1096 243 118 31 chr4 136737234 136737360 -65590987 - MLT1L LTR MaLR -301 314 200 223 308 297 8 chr4 136737448 136737929 -65590418 + L2 LINE L2 523 1142 -2172 261 310 64 41 chr4 136737953 136738124 -65590223 + L2 LINE L2 1361 1535 -1779 2475 53 3 7 chr4 136738301 136738601 -65589746 - AluY SINE Alu -12 299 1 2188 102 0 23 chr4 136738606 136738911 -65589436 - AluSq SINE Alu -15 298 1 253 352 95 33 chr4 136739332 136739542 -65588805 + L2 LINE L2 2827 3049 -223 204 40 0 0 chr4 136739882 136739907 -65588440 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 310 254 154 9 chr4 136740811 136740921 -65587426 + L2 LINE L2 3183 3308 -5 523 234 150 36 chr4 136741008 136741175 -65587172 + MIR SINE MIR 56 241 -21 200 318 68 11 chr4 136742482 136742570 -65585777 + L2 LINE L2 3142 3234 -38 226 220 0 34 chr4 136746332 136746391 -65581956 + L1MC4 LINE L1 6646 6702 -1340 1861 131 38 21 chr4 136746474 136746764 -65581583 + AluSx SINE Alu 1 295 -17 238 150 0 0 chr4 136746989 136747029 -65581318 - L2 LINE L2 0 3313 3274 586 191 11 0 chr4 136747051 136747145 -65581202 + AluJ/FLAM SINE Alu 3 97 -215 951 173 0 0 chr4 136747145 136747295 -65581052 + AluJo/FRAM SINE Alu 143 292 -20 543 295 129 54 chr4 136749598 136749833 -65578514 - L2 LINE L2 0 3272 3003 979 164 62 58 chr4 136749833 136749906 -65578441 - MER3 DNA MER1_type 0 209 138 2185 74 47 7 chr4 136749906 136750239 -65578108 + AluSg SINE Alu 1 345 0 979 164 62 58 chr4 136750239 136750371 -65577976 - MER3 DNA MER1_type -71 138 1 543 295 129 54 chr4 136750371 136750467 -65577880 - L2 LINE L2 -269 3003 2916 1072 295 121 38 chr4 136750497 136750662 -65577685 - L2 LINE L2 -2282 1032 882 2171 107 0 3 chr4 136750662 136750962 -65577385 + AluSg SINE Alu 2 300 -10 1072 295 121 38 chr4 136750962 136751538 -65576809 - L2 LINE L2 -2432 882 229 251 326 12 12 chr4 136752480 136752566 -65575781 - MIR3 SINE MIR -23 185 100 2076 154 0 0 chr4 136752623 136752935 -65575412 + AluJb SINE Alu 1 312 0 333 298 214 20 chr4 136753061 136753309 -65575038 - L3 LINE CR1 -88 1489 1194 1678 205 0 3 chr4 136753550 136753848 -65574499 + AluJo SINE Alu 5 301 -11 2323 82 7 10 chr4 136753876 136754181 -65574166 + AluSq SINE Alu 1 304 -9 21 57 0 0 chr4 136754658 136754693 -65573654 + AT_rich Low_complexity Low_complexity 1 35 0 3198 90 32 11 chr4 136754718 136755153 -65573194 + MLT2A1 LTR ERVL 1 444 0 191 352 14 42 chr4 136755631 136755702 -65572645 - L2 LINE L2 -19 3253 3185 2259 106 0 0 chr4 136755814 136756096 -65572251 + AluSc SINE Alu 1 282 -27 2121 127 0 0 chr4 136756126 136756425 -65571922 + AluSx SINE Alu 10 308 -4 232 332 134 14 chr4 136756661 136756884 -65571463 - L2 LINE L2 -219 3053 2804 944 216 35 148 chr4 136756951 136757498 -65570849 - L1MC4 LINE L1 -1 8041 7557 2223 260 2 0 chr4 136757612 136758074 -65570273 + L1M1 LINE L1 2 464 -6385 1123 309 60 0 chr4 136758094 136758444 -65569903 + L1M1 LINE L1 624 994 -5855 8570 174 27 34 chr4 136758479 136759400 -65568947 + L1M1 LINE L1 2826 3752 -3096 1744 171 3 20 chr4 136759400 136759705 -65568642 + AluJo SINE Alu 1 300 -12 1945 146 17 3 chr4 136759712 136760007 -65568340 + AluSx SINE Alu 4 302 -10 8570 174 27 34 chr4 136760007 136760143 -65568204 + L1M1 LINE L1 3758 3893 -2955 2184 79 22 0 chr4 136760143 136760445 -65567902 + AluY SINE Alu 1 308 0 2372 73 0 7 chr4 136760445 136760747 -65567600 + AluY SINE Alu 1 300 -11 8570 174 27 34 chr4 136760747 136761566 -65566781 + L1M1 LINE L1 3892 4694 -2154 2196 81 0 72 chr4 136761566 136761886 -65566461 + AluSc SINE Alu 12 308 -1 8570 174 27 34 chr4 136761886 136762602 -65565745 + L1M1 LINE L1 4694 5413 -1435 2252 111 7 0 chr4 136762602 136762899 -65565448 + AluSg SINE Alu 1 299 -11 3092 118 2 0 chr4 136762899 136763348 -65564999 + L1M1 LINE L1 6024 6473 -532 1921 66 16 6 chr4 136763356 136763611 -65564736 + LTR12 LTR ERV1 57 284 -430 240 247 14 14 chr4 136763612 136763685 -65564662 + LTR30 LTR ERV1 552 624 -98 2899 138 32 49 chr4 136763713 136764092 -65564255 + L1MA4A LINE L1 5770 6154 -149 2160 98 3 13 chr4 136764092 136764398 -65563949 - AluSx SINE Alu -9 303 1 2899 138 32 49 chr4 136764398 136764437 -65563910 + L1MA4A LINE L1 6154 6192 -111 1969 107 0 18 chr4 136764437 136764709 -65563638 + AluSx SINE Alu 39 305 -7 2899 138 32 49 chr4 136764709 136764824 -65563523 + L1MA4A LINE L1 6192 6295 -8 1711 187 3 0 chr4 136764832 136765121 -65563226 + AluJo SINE Alu 1 290 -22 31 0 0 0 chr4 136765124 136765155 -65563192 + AT_rich Low_complexity Low_complexity 1 31 0 210 333 40 32 chr4 136765177 136765303 -65563044 - L2 LINE L2 -570 2744 2618 2149 108 0 7 chr4 136765466 136765798 -65562549 + AluSq SINE Alu 1 330 0 466 307 133 33 chr4 136765888 136766250 -65562097 + L1MEd LINE L1 316 713 -5659 1865 211 41 82 chr4 136766251 136766811 -65561536 - MLT2B3 LTR ERVL 0 554 18 837 283 88 77 chr4 136766815 136767314 -65561033 + L1MEd LINE L1 745 1237 -5135 1965 159 0 0 chr4 136767314 136767615 -65560732 + AluSx SINE Alu 1 301 -11 837 283 88 77 chr4 136767615 136767641 -65560706 + L1MEd LINE L1 1237 1261 -5111 2339 92 3 0 chr4 136767641 136767956 -65560391 + AluSq SINE Alu 1 316 0 979 114 7 0 chr4 136767960 136768109 -65560238 + L1MA6 LINE L1 6150 6299 -1 1948 163 7 0 chr4 136768112 136768419 -65559928 + AluJb SINE Alu 3 311 -1 837 283 88 77 chr4 136768419 136768639 -65559708 + L1MEd LINE L1 1264 1510 -4862 237 232 0 0 chr4 136768672 136768728 -65559619 + A-rich Low_complexity Low_complexity 4 59 0 348 304 27 0 chr4 136768758 136768870 -65559477 + HAL1 LINE L1 1517 1631 -876 1169 213 28 113 chr4 136768884 136769037 -65559310 + MLT1A1 LTR MaLR 1 165 -200 2075 97 7 10 chr4 136769037 136769358 -65558989 + AluSx SINE Alu 1 312 0 1169 213 28 113 chr4 136769358 136769603 -65558744 + MLT1A1 LTR MaLR 165 365 0 21 0 0 0 chr4 136769781 136769802 -65558545 + AT_rich Low_complexity Low_complexity 1 21 0 620 262 55 55 chr4 136769928 136770087 -65558260 + L1MEd LINE L1 2318 2476 -3906 2349 75 3 26 chr4 136770087 136770394 -65557953 + AluY SINE Alu 2 301 -10 620 262 55 55 chr4 136770394 136770654 -65557693 + L1MEd LINE L1 2476 2741 -3641 241 289 35 53 chr4 136770684 136770798 -65557549 - L2 LINE L2 -965 2349 2238 191 409 100 14 chr4 136771194 136771414 -65556933 - L2 LINE L2 -208 3064 2826 499 81 103 11 chr4 136771917 136772004 -65556343 + Alu SINE Alu 215 309 -2 1825 138 15 4 chr4 136772300 136772569 -65555778 + AluSx SINE Alu 34 305 -7 2306 108 0 0 chr4 136772968 136773265 -65555082 - AluSx SINE Alu -15 297 1 229 305 73 13 chr4 136773278 136773332 -65555015 - L1MC/D LINE L1 -431 5928 5875 608 231 93 14 chr4 136773332 136773548 -65554799 - L1ME3A LINE L1 -299 5871 5639 2019 100 3 85 chr4 136774653 136774984 -65553363 + AluSx SINE Alu 1 304 -8 2106 82 39 4 chr4 136776453 136776734 -65551613 - AluSc SINE Alu -16 293 3 365 291 133 18 chr4 136777045 136777210 -65551137 + MIR SINE MIR 47 230 -32 2342 84 0 0 chr4 136777651 136777963 -65550384 + AluSq SINE Alu 1 312 0 582 209 34 34 chr4 136779948 136780096 -65548251 + MIR SINE MIR 65 212 -50 2271 168 3 13 chr4 136781499 136781886 -65546461 + MLT1B LTR MaLR 1 383 -7 512 185 7 26 chr4 136783434 136783529 -65544818 + GA-rich Low_complexity Low_complexity 2 94 -55 2382 91 0 0 chr4 136783529 136783827 -65544520 + AluY SINE Alu 1 298 -13 512 185 7 26 chr4 136783827 136783882 -65544465 + GA-rich Low_complexity Low_complexity 94 149 0 2924 73 95 2 chr4 136783906 136784316 -65544031 - LTR7 LTR ERV1 -2 448 1 2406 102 48 5 chr4 136784316 136784690 -65543657 - HERVH LTR ERV1 0 7713 7324 1274 149 23 0 chr4 136784690 136784905 -65543442 - HERVH LTR ERV1 -1894 5819 5600 4532 139 0 1 chr4 136784906 136785569 -65542778 - HERVH LTR ERV1 -2564 5149 4488 3493 101 4 6 chr4 136785571 136786074 -65542273 - HERVH LTR ERV1 -3720 3993 3492 996 120 7 0 chr4 136786064 136786214 -65542133 - HERVH LTR ERV1 -4423 3290 3140 * 19652 99 21 28 chr4 136786193 136789210 -65539137 - HERVH LTR ERV1 -4718 2995 1 3172 54 98 5 chr4 136789212 136789622 -65538725 - LTR7 LTR ERV1 -2 448 1 1719 2 0 0 chr4 136790135 136790373 -65537974 - L1PA3 LINE L1 -697 5458 5221 6426 17 1 8 chr4 136790373 136791074 -65537273 + L1PA3 LINE L1 5459 6155 0 27 0 0 0 chr4 136791096 136791123 -65537224 + AT_rich Low_complexity Low_complexity 1 27 0 222 37 0 0 chr4 136791140 136791167 -65537180 + (A)n Simple_repeat Simple_repeat 1 27 0 2218 94 3 38 chr4 136791709 136792028 -65536319 + AluSx SINE Alu 1 308 -4 287 268 116 51 chr4 136792051 136792189 -65536158 - MIR SINE MIR -59 203 57 714 278 52 7 chr4 136793357 136793666 -65534681 + L1MC4 LINE L1 6997 7319 -723 515 117 0 13 chr4 136793672 136793807 -65534540 - AluJ SINE Alu 0 341 208 766 204 19 6 chr4 136793807 136793964 -65534383 - AluJ SINE Alu -152 160 2 1164 226 138 85 chr4 136793970 136794238 -65534109 + L1MC4 LINE L1 7327 7579 -463 1582 60 0 0 chr4 136794238 136794423 -65533924 + AluY SINE Alu 1 185 -126 1164 226 138 85 chr4 136794423 136794834 -65533513 + L1MC4 LINE L1 7579 8042 0 189 200 0 0 chr4 136794976 136795016 -65533331 - MIR3 SINE MIR -5 203 164 499 208 111 21 chr4 136795064 136795208 -65533139 - MER103 DNA DNA -7 159 3 1088 204 5 0 chr4 136795248 136795444 -65532903 + L1PB4 LINE L1 5946 6142 -14 1921 95 0 19 chr4 136795465 136795727 -65532620 - AluSq SINE Alu -56 257 1 22 0 0 0 chr4 136795727 136795749 -65532598 + AT_rich Low_complexity Low_complexity 1 22 0 315 253 115 11 chr4 136795794 136795881 -65532466 - MIR3 SINE MIR -31 177 82 1901 92 0 57 chr4 136795886 136796169 -65532178 - AluSg SINE Alu -43 267 1 4446 109 21 10 chr4 136797547 136798168 -65530179 - MER51A LTR ERV1 0 634 7 398 270 116 55 chr4 136798202 136798495 -65529852 + MLT1I LTR MaLR 73 383 -26 251 146 125 0 chr4 136798462 136798510 -65529837 + MLT1J2 LTR MaLR 397 450 0 * 204 158 0 0 chr4 136799709 136799747 -65528600 + (TAGA)n Simple_repeat Simple_repeat 2 39 0 500 301 160 19 chr4 136800429 136800754 -65527593 + L2 LINE L2 1952 2322 -992 254 305 68 17 chr4 136800875 136800993 -65527354 - L2 LINE L2 -27 3286 3163 217 62 42 42 chr4 136801301 136801349 -65526998 + (TG)n Simple_repeat Simple_repeat 2 49 0 346 183 43 9 chr4 136801708 136801823 -65526524 + GA-rich Low_complexity Low_complexity 1 119 0 1934 107 12 86 chr4 136801864 136802191 -65526156 + AluSx SINE Alu 1 303 -9 339 48 0 0 chr4 136802235 136802277 -65526070 + AluY SINE Alu 1 42 -261 728 74 0 0 chr4 136802278 136802373 -65525974 + AluSc SINE Alu 215 309 0 1921 154 3 22 chr4 136802875 136803186 -65525161 + AluJo SINE Alu 1 305 -7 388 264 110 44 chr4 136803842 136804024 -65524323 - MIR SINE MIR 0 262 69 1616 210 73 14 chr4 136805174 136805548 -65522799 - MLT1D LTR MaLR -23 470 113 457 119 0 0 chr4 136805555 136805622 -65522725 - Alu SINE Alu -8 304 238 824 146 24 0 chr4 136805629 136805752 -65522595 - AluJb SINE Alu -186 126 1 379 200 19 76 chr4 136805752 136805857 -65522490 - MLT1D LTR MaLR -419 86 1 791 260 141 58 chr4 136806075 136806486 -65521861 - MLT1H LTR MaLR -17 532 88 2355 109 0 0 chr4 136807922 136808225 -65520122 + AluSq SINE Alu 3 305 -8 213 196 0 0 chr4 136808232 136808283 -65520064 + A-rich Low_complexity Low_complexity 1 51 0 313 296 50 48 chr4 136808667 136808820 -65519527 + MIR3 SINE MIR 2 156 -52 1924 179 27 35 chr4 136809334 136809702 -65518645 - MLT1A1 LTR MaLR 0 365 1 2219 132 0 0 chr4 136810050 136810361 -65517986 + AluSx SINE Alu 1 311 -1 2063 108 0 7 chr4 136810378 136810705 -65517642 + AluY SINE Alu 1 325 0 385 302 44 77 chr4 136810807 136811055 -65517292 - MIR SINE MIR -3 259 20 279 0 0 0 chr4 136812337 136812368 -65515979 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1681 152 33 0 chr4 136812374 136812644 -65515703 - AluJo SINE Alu -32 280 2 2527 58 3 3 chr4 136812933 136813243 -65515104 - AluY SINE Alu -1 310 1 709 245 102 48 chr4 136813317 136813775 -65514572 - MLT1H LTR MaLR 0 549 1 222 365 114 25 chr4 136813826 136814387 -65513960 + L2 LINE L2 1714 2324 -990 235 227 0 0 chr4 136814529 136814573 -65513774 - L2 LINE L2 -10 3262 3219 1116 122 13 0 chr4 136815329 136815485 -65512862 + AluSg SINE Alu 1 158 -152 4431 119 117 116 chr4 136815490 136816866 -65511481 + pTR5 LTR ERV1 740 2438 0 888 141 0 7 chr4 136816868 136817008 -65511339 + AluSg SINE Alu 160 300 -10 266 71 0 24 chr4 136817008 136817050 -65511297 + (TA)n Simple_repeat Simple_repeat 2 42 0 2366 84 0 7 chr4 136817065 136817373 -65510974 - AluY SINE Alu -5 306 1 2294 74 0 3 chr4 136817633 136817945 -65510402 - AluSq SINE Alu 0 311 1 594 254 0 23 chr4 136818681 136818811 -65509536 + FLAM_C SINE Alu 1 127 -6 243 0 0 0 chr4 136818890 136818917 -65509430 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1653 161 79 0 chr4 136818928 136819093 -65509254 - AluJo SINE Alu -7 305 108 186 103 0 0 chr4 136819093 136819122 -65509225 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1653 161 79 0 chr4 136819122 136819235 -65509112 - AluJo SINE Alu -204 108 5 271 328 48 92 chr4 136819305 136819576 -65508771 - MIR SINE MIR 0 262 4 2406 90 3 0 chr4 136820322 136820622 -65507725 + AluSp SINE Alu 1 301 -12 1289 215 157 48 chr4 136820771 136820850 -65507497 + LTR48 LTR ERV1 1 70 -525 2440 63 3 10 chr4 136820850 136821152 -65507195 + AluY SINE Alu 2 301 -10 1289 215 157 48 chr4 136821152 136821550 -65506797 + LTR48 LTR ERV1 70 442 -153 2238 119 0 0 chr4 136821550 136821845 -65506502 + AluSx SINE Alu 1 295 -17 1289 215 157 48 chr4 136821845 136822018 -65506329 + LTR48 LTR ERV1 442 595 0 1506 162 0 0 chr4 136822455 136822696 -65505651 - AluSg SINE Alu -9 301 61 1514 163 58 32 chr4 136822759 136823036 -65505311 - AluJo SINE Alu -18 284 1 2092 99 28 7 chr4 136823340 136823622 -65504725 + AluSq SINE Alu 1 288 -25 222 37 0 0 chr4 136823626 136823653 -65504694 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2162 108 0 4 chr4 136824095 136824399 -65503948 + AluSc SINE Alu 1 303 0 1939 130 0 20 chr4 136824438 136824737 -65503610 - AluJb SINE Alu -18 294 2 1958 170 139 23 chr4 136825010 136825094 -65503253 - MER97a DNA MER1_type? -128 766 693 1948 103 6 61 chr4 136825094 136825406 -65502941 - AluSp SINE Alu 0 313 19 1958 170 139 23 chr4 136825406 136826080 -65502267 - MER97a DNA MER1_type? -201 693 1 22 56 0 0 chr4 136826138 136826174 -65502173 + AT_rich Low_complexity Low_complexity 1 36 0 279 162 14 40 chr4 136826370 136826444 -65501903 + MIR3 SINE MIR 135 206 -2 192 77 0 0 chr4 136826897 136826923 -65501424 + (TG)n Simple_repeat Simple_repeat 1 26 0 247 262 167 38 chr4 136827231 136827494 -65500853 - L1MC5 LINE L1 -26 7935 7639 2450 172 108 6 chr4 136827494 136827994 -65500353 + MER34C LTR ERV1 35 585 0 1516 183 7 20 chr4 136828044 136828339 -65500008 - AluJo SINE Alu -21 291 1 243 0 0 0 chr4 136828341 136828368 -65499979 + (T)n Simple_repeat Simple_repeat 1 27 0 486 214 19 0 chr4 136828382 136828485 -65499862 - L1MC5 LINE L1 -386 7575 7471 415 196 33 0 chr4 136828611 136828703 -65499644 - MIR SINE MIR -50 212 118 3117 154 10 19 chr4 136828705 136828849 -65499498 - MER50 LTR ERV1 -23 711 567 1472 113 198 12 chr4 136828849 136829096 -65499251 + AluSg1 SINE Alu 1 293 -16 3117 154 10 19 chr4 136829096 136829463 -65498884 - MER50 LTR ERV1 -167 567 205 3775 104 7 28 chr4 136829469 136830006 -65498341 - MER61E LTR ERV1 -43 526 1 642 93 0 0 chr4 136830006 136830092 -65498255 - MER50 LTR ERV1 -524 210 125 1219 99 19 0 chr4 136830092 136830253 -65498094 - AluSq SINE Alu -84 229 66 363 200 35 0 chr4 136830258 136830343 -65498004 - MIR SINE MIR -57 205 118 452 119 90 0 chr4 136830349 136830416 -65497931 - AluSq SINE Alu -238 74 2 828 85 47 39 chr4 136830418 136830547 -65497800 - MER50 LTR ERV1 -604 130 1 306 243 14 0 chr4 136830550 136830620 -65497727 - MIR SINE MIR -144 118 48 701 319 11 39 chr4 136830642 136830902 -65497445 - MIR SINE MIR -2 260 8 792 154 0 0 chr4 136831197 136831314 -65497033 + FLAM_C SINE Alu 1 117 -16 216 0 0 0 chr4 136831317 136831341 -65497006 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2434 89 0 6 chr4 136831343 136831657 -65496690 + AluSp SINE Alu 2 313 0 3155 154 16 68 chr4 136831831 136832448 -65495899 - MER34C LTR ERV1 0 585 1 1809 147 0 4 chr4 136833078 136833357 -65494990 + AluJb SINE Alu 35 312 0 1446 158 34 121 chr4 136833387 136833824 -65494523 - LTR37A LTR ERV1 -9 417 19 2088 187 93 30 chr4 136834597 136835058 -65493289 + LTR2B LTR ERV1 1 490 0 293 180 80 40 chr4 136835350 136835450 -65492897 + L1ME LINE L1 5542 5645 -476 845 176 79 32 chr4 136835468 136835657 -65492690 + L1MA9 LINE L1 4340 4543 -1603 2227 70 3 11 chr4 136835657 136835971 -65492376 - AluSp SINE Alu 0 313 2 845 176 79 32 chr4 136835971 136835996 -65492351 + L1MA9 LINE L1 4543 4565 -1581 1809 113 4 11 chr4 136836108 136836382 -65491965 + AluSc SINE Alu 27 298 -11 3843 162 34 12 chr4 136836382 136837029 -65491318 + MER72 LTR ERV1 62 722 0 5136 162 31 30 chr4 136837029 136838656 -65489691 + L1MA9 LINE L1 4562 6186 -126 1811 104 76 124 chr4 136838656 136838901 -65489446 - THE1C LTR MaLR 0 375 120 2290 94 3 0 chr4 136838901 136839187 -65489160 + AluSp SINE Alu 2 288 -25 207 0 0 0 chr4 136839190 136839213 -65489134 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1811 104 76 124 chr4 136839213 136839357 -65488990 - THE1C LTR MaLR -257 118 1 5136 162 31 30 chr4 136839357 136839427 -65488920 + L1MA9 LINE L1 6186 6274 -38 2400 67 7 3 chr4 136839632 136839929 -65488418 - AluY SINE Alu -13 298 1 840 212 57 50 chr4 136839930 136839963 -65488384 - L1MC5 LINE L1 -23 7938 7907 1920 123 60 0 chr4 136839963 136840247 -65488100 + AluSx SINE Alu 1 301 -11 840 212 57 50 chr4 136840247 136840496 -65487851 - L1MC5 LINE L1 -54 7907 7654 185 211 19 0 chr4 136840523 136840575 -65487772 + (TA)n Simple_repeat Simple_repeat 1 53 0 371 253 56 94 chr4 136840576 136840809 -65487538 - MER31-int LTR ERV1 -1435 3501 3278 333 175 33 17 chr4 136842781 136842901 -65485446 + (TA)n Simple_repeat Simple_repeat 1 122 0 2398 57 0 23 chr4 136843699 136844000 -65484347 - AluY SINE Alu -17 294 1 1517 105 48 40 chr4 136844015 136844243 -65484104 - MER30 DNA MER1_type 0 230 1 442 276 150 0 chr4 136844244 136844371 -65483976 + MER63A DNA MER1_type 60 205 -5 564 340 10 5 chr4 136844647 136844841 -65483506 - L3 LINE CR1 -142 1435 1241 435 195 69 0 chr4 136844845 136844932 -65483415 - MIR3 SINE MIR -35 173 81 325 129 65 0 chr4 136845043 136845105 -65483242 - Alu SINE Alu 0 302 237 2053 90 4 4 chr4 136845105 136845372 -65482975 - AluSx SINE Alu -45 267 1 236 393 29 0 chr4 136845373 136845513 -65482834 - L3 LINE CR1 -398 1179 1036 1131 219 50 83 chr4 136845616 136846100 -65482247 - LTR37B LTR ERV1 0 468 1 30 59 0 0 chr4 136846103 136846154 -65482193 + AT_rich Low_complexity Low_complexity 1 51 0 2348 89 3 0 chr4 136846162 136846465 -65481882 - AluSp SINE Alu -9 304 1 2311 117 0 0 chr4 136846611 136846919 -65481428 - AluSx SINE Alu -4 308 1 5739 92 3 53 chr4 136846929 136847534 -65480813 - L1PA13 LINE L1 0 6163 5529 1964 165 114 35 chr4 136847534 136847988 -65480359 + LTR2B LTR ERV1 1 490 0 5739 92 3 53 chr4 136847988 136848255 -65480092 - L1PA13 LINE L1 -634 5529 5250 2428 90 0 0 chr4 136848255 136848556 -65479791 - AluSg SINE Alu -9 301 1 2203 122 3 0 chr4 136848558 136848853 -65479494 - AluSx SINE Alu -16 296 1 5739 92 3 53 chr4 136848853 136848881 -65479466 - L1PA13 LINE L1 -831 5332 5304 407 264 109 47 chr4 136848991 136849045 -65479302 - L3 LINE CR1 -45 1532 1483 2190 105 7 7 chr4 136849045 136849339 -65479008 + AluSg SINE Alu 1 294 -16 407 264 109 47 chr4 136849339 136849477 -65478870 - L3 LINE CR1 -94 1483 1328 2488 57 3 0 chr4 136849971 136850270 -65478077 + AluY SINE Alu 1 300 -11 2045 79 39 7 chr4 136850270 136850548 -65477799 + AluSc SINE Alu 1 288 -21 575 126 19 29 chr4 136850815 136850918 -65477429 + MER3 DNA MER1_type 108 209 0 1646 183 87 33 chr4 136850986 136851352 -65476995 - MLT1B LTR MaLR -2 388 3 2281 87 3 13 chr4 136851372 136851681 -65476666 - AluY SINE Alu -5 306 1 872 139 0 29 chr4 136851710 136851847 -65476500 + FLAM_C SINE Alu 1 133 0 1957 132 108 72 chr4 136853025 136853443 -65474904 - Tigger2a DNA MER2_type 0 434 2 800 99 0 151 chr4 136853584 136853736 -65474611 - AluSg/x SINE Alu -13 299 171 2075 97 8 0 chr4 136854491 136854759 -65473588 + AluSx SINE Alu 26 295 -17 773 323 65 14 chr4 136854930 136855209 -65473138 - L3 LINE CR1 -224 1353 1061 745 186 90 0 chr4 136855382 136855549 -65472798 - LTR50 LTR ERVL -5 790 609 608 255 59 34 chr4 136855717 136855921 -65472426 - LTR16B LTR ERVL -210 254 46 723 170 82 44 chr4 136855989 136856171 -65472176 - MER53 DNA DNA 0 189 1 883 188 150 57 chr4 136856217 136856613 -65471734 - LTR50 LTR ERVL -178 617 99 2433 81 3 0 chr4 136856662 136856972 -65471375 + AluSp SINE Alu 1 311 -2 1882 145 3 3 chr4 136857265 136857579 -65470768 + AluSx SINE Alu 1 314 0 21 0 0 0 chr4 136858194 136858215 -65470132 + AT_rich Low_complexity Low_complexity 1 21 0 2360 175 103 45 chr4 136858461 136858948 -65469399 - MLT1F1 LTR MaLR 0 567 45 1636 185 15 108 chr4 136858948 136859348 -65468999 - MLT1A1 LTR MaLR 0 365 3 2360 175 103 45 chr4 136859348 136859392 -65468955 - MLT1F1 LTR MaLR -522 45 5 2318 99 3 0 chr4 136859572 136859874 -65468473 - AluSx SINE Alu -9 303 1 1078 210 82 102 chr4 136860552 136860838 -65467509 - MSTD LTR MaLR 0 396 106 2448 83 0 0 chr4 136860838 136861140 -65467207 - AluY SINE Alu -9 302 1 2089 112 63 0 chr4 136861141 136861428 -65466919 - AluSp SINE Alu -8 305 1 1078 210 82 102 chr4 136861428 136861543 -65466804 - MSTD LTR MaLR -289 107 1 249 33 0 0 chr4 136862198 136862228 -65466119 + (CA)n Simple_repeat Simple_repeat 2 31 0 1856 154 0 7 chr4 136862228 136862520 -65465827 - AluJb SINE Alu -22 290 1 22 0 0 0 chr4 136862737 136862759 -65465588 + AT_rich Low_complexity Low_complexity 1 22 0 384 352 31 6 chr4 136862815 136862977 -65465370 + MIR3 SINE MIR 38 203 -5 436 257 39 62 chr4 136863853 136864032 -65464315 + MIR SINE MIR 48 222 -40 184 211 158 0 chr4 136864315 136864372 -65463975 - L2 LINE L2 -50 3222 3157 370 171 15 104 chr4 136864727 136864842 -65463505 + MER110A LTR ERV1 81 170 -298 242 250 62 50 chr4 136864914 136864994 -65463353 + MER110 LTR ERV1 166 246 -245 2289 100 10 0 chr4 136864999 136865299 -65463048 + AluSx SINE Alu 2 304 -8 684 250 25 0 chr4 136865304 136865464 -65462883 + MER110 LTR ERV1 328 491 0 925 128 8 0 chr4 136866229 136866362 -65461985 + AluJo SINE Alu 1 134 -178 278 342 77 9 chr4 136866646 136866814 -65461533 - MIR SINE MIR -57 151 2 1205 189 50 117 chr4 136867111 136867590 -65460757 - MER39 LTR ERV1 0 688 257 473 238 9 9 chr4 136867573 136867678 -65460669 - MER34 LTR ERV1 -429 113 9 * 1873 134 3 34 chr4 136867703 136868001 -65460346 - AluSx SINE Alu -22 290 2 2114 116 7 3 chr4 136868244 136868545 -65459802 - AluSg SINE Alu -8 302 1 594 251 63 80 chr4 136869644 136869931 -65458416 - L2 LINE L2 0 3313 3032 277 247 0 55 chr4 136870125 136870198 -65458149 - MER91A DNA MER1_type -3 193 125 686 181 202 1 chr4 136870206 136870390 -65457957 + L1MA6 LINE L1 6068 6300 0 954 252 103 18 chr4 136870432 136870730 -65457617 - MLT1J LTR MaLR -141 370 38 2074 94 11 0 chr4 136870730 136871063 -65457284 + AluSp SINE Alu 1 313 0 954 252 103 18 chr4 136871063 136871105 -65457242 - MLT1J LTR MaLR -473 38 1 355 301 35 75 chr4 136871204 136871358 -65456989 + MIR SINE MIR 61 208 -54 2172 108 0 7 chr4 136871358 136871692 -65456655 + AluSq SINE Alu 1 332 0 355 301 35 75 chr4 136871692 136871735 -65456612 + MIR SINE MIR 208 251 -11 2118 105 3 39 chr4 136871910 136872216 -65456131 + AluSq SINE Alu 3 297 -16 239 355 13 0 chr4 136872383 136872459 -65455888 + MER91A DNA MER1_type 22 98 -98 23 0 0 0 chr4 136873434 136873457 -65454890 + AT_rich Low_complexity Low_complexity 1 23 0 1329 87 0 6 chr4 136873559 136873731 -65454616 - AluSq SINE Alu -10 303 133 2468 72 7 10 chr4 136873800 136874105 -65454242 - AluSg SINE Alu -6 304 1 1719 176 3 3 chr4 136874118 136874408 -65453939 - AluJo SINE Alu -22 290 1 404 270 61 0 chr4 136875133 136875248 -65453099 - L2 LINE L2 0 3313 3192 858 199 13 6 chr4 136875327 136875483 -65452864 + FRAM SINE Alu 1 157 -9 23 33 0 0 chr4 136875483 136875513 -65452834 + AT_rich Low_complexity Low_complexity 1 30 0 1096 236 100 35 chr4 136875513 136875912 -65452435 + L1ME3A LINE L1 5691 6115 -55 314 151 191 71 chr4 136877092 136877218 -65451129 - L1MC5 LINE L1 -48 7913 7773 242 113 81 16 chr4 136877222 136877284 -65451063 + CT-rich Low_complexity Low_complexity 3 68 0 2578 55 3 0 chr4 136877306 136877617 -65450730 - AluSx SINE Alu 0 312 1 250 246 0 15 chr4 136877624 136877689 -65450658 - L1MC5 LINE L1 -185 7776 7713 1196 161 9 36 chr4 136877689 136877912 -65450435 - AluJb SINE Alu -14 298 82 1954 162 3 0 chr4 136877953 136878261 -65450086 + AluSx SINE Alu 2 310 -2 635 154 0 16 chr4 136878264 136878387 -65449960 + GA-rich Low_complexity Low_complexity 4 124 0 246 252 118 44 chr4 136878404 136878539 -65449808 - L1MC5 LINE L1 -518 7443 7299 3021 181 62 57 chr4 136878685 136878774 -65449573 - LTR8A LTR ERV1 0 727 640 1753 123 17 55 chr4 136878774 136879113 -65449234 + AluSx SINE Alu 1 328 0 3021 181 62 57 chr4 136879113 136879745 -65448602 - LTR8A LTR ERV1 -87 640 1 217 324 0 14 chr4 136879761 136879835 -65448512 - MIR SINE MIR -117 91 19 4374 106 17 8 chr4 136880380 136880975 -65447372 - MER4A LTR ERV1 0 600 1 2253 88 0 0 chr4 136881030 136881360 -65446987 + AluY SINE Alu 1 330 0 2982 149 47 47 chr4 136881683 136881844 -65446503 - MER21A LTR ERV1 0 931 771 2310 73 0 14 chr4 136881844 136882159 -65446188 + AluSp SINE Alu 2 312 0 2982 149 47 47 chr4 136882159 136882546 -65445801 - MER21A LTR ERV1 -159 772 382 1256 136 92 0 chr4 136882557 136882785 -65445562 - MER21A LTR ERV1 -667 264 16 301 167 58 52 chr4 136882812 136882986 -65445361 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 742 199 0 15 chr4 136882991 136883127 -65445220 - AluJo SINE Alu -100 212 79 206 148 56 19 chr4 136883127 136883181 -65445166 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 2619 114 35 50 chr4 136884195 136884599 -65443748 + MER48 LTR ERV1 1 398 0 1645 190 0 7 chr4 136884607 136884902 -65443445 - AluJo SINE Alu -19 293 1 180 217 0 0 chr4 136885429 136885475 -65442872 + (TA)n Simple_repeat Simple_repeat 2 47 0 1835 170 0 16 chr4 136885598 136885915 -65442432 + AluJb SINE Alu 1 312 0 23 0 0 0 chr4 136885980 136886003 -65442344 + AT_rich Low_complexity Low_complexity 1 23 0 352 269 50 71 chr4 136886362 136886544 -65441803 + MER5B DNA MER1_type 1 178 0 23 68 0 0 chr4 136886730 136886774 -65441573 + AT_rich Low_complexity Low_complexity 1 44 0 1932 141 11 0 chr4 136887140 136887424 -65440923 + AluJb SINE Alu 1 287 -25 1600 216 151 103 chr4 136887488 136887747 -65440600 + L1MC4 LINE L1 7084 7329 -713 316 73 0 0 chr4 136887747 136887788 -65440559 + MER4B LTR ERV1 499 539 -71 1600 216 151 103 chr4 136887788 136887948 -65440399 + L1MC4 LINE L1 7329 7480 -562 1631 175 49 11 chr4 136887948 136888233 -65440114 + AluJb SINE Alu 3 298 -14 2016 128 7 3 chr4 136888235 136888531 -65439816 + AluSx SINE Alu 3 299 -13 1600 216 151 103 chr4 136888531 136888722 -65439625 + L1MC4 LINE L1 7480 7660 -382 4957 109 13 34 chr4 136888722 136889425 -65438922 + LTR12 LTR ERV1 1 688 0 1600 216 151 103 chr4 136889425 136889673 -65438674 + L1MC4 LINE L1 7660 8042 0 1626 192 13 7 chr4 136889694 136889996 -65438351 + AluJb SINE Alu 1 304 -8 2209 113 3 0 chr4 136890128 136890420 -65437927 - AluSp SINE Alu -20 293 1 1964 137 3 32 chr4 136890586 136890899 -65437448 - AluSx SINE Alu -8 304 1 2023 106 31 17 chr4 136890906 136891198 -65437149 - AluSg SINE Alu -14 296 1 855 160 95 0 chr4 136891201 136891370 -65436977 - L1MB3 LINE L1 0 6183 5999 577 210 169 16 chr4 136891379 136891591 -65436756 - L1M4 LINE L1 -870 5276 5040 2226 92 0 26 chr4 136891753 136892056 -65436291 - AluSg SINE Alu -14 296 2 1314 205 123 69 chr4 136892394 136892784 -65435563 - MER31B LTR ERV1 -55 411 1 843 187 50 6 chr4 136892867 136893107 -65435240 - AluJb SINE Alu -16 296 2 496 210 32 16 chr4 136893110 136893234 -65435113 - MER31B-int LTR ERV1 -1993 2943 2818 180 0 0 0 chr4 136894130 136894150 -65434197 + (TG)n Simple_repeat Simple_repeat 1 20 0 5747 57 8 12 chr4 136894879 136895634 -65432713 - L1MC/D LINE L1 0 6155 5385 372 94 0 0 chr4 136895992 136896045 -65432302 + (TTCC)n Simple_repeat Simple_repeat 3 55 0 1750 174 7 10 chr4 136896048 136896352 -65431995 - AluSx SINE Alu 0 312 10 227 218 30 30 chr4 136897041 136897142 -65431205 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 357 140 0 0 chr4 136897477 136897534 -65430813 - AluS SINE Alu -246 57 1 562 210 91 14 chr4 136897543 136897686 -65430661 - MER31B-int LTR ERV1 -4765 171 18 1839 166 111 82 chr4 136897742 136897950 -65430397 - MER31B LTR ERV1 -1 465 264 1895 151 3 43 chr4 136897950 136898274 -65430073 - AluJo SINE Alu -1 311 1 1839 166 111 82 chr4 136898274 136898469 -65429878 - MER31B LTR ERV1 -202 264 45 1953 133 0 44 chr4 136898469 136898784 -65429563 - AluSx SINE Alu -11 301 1 1839 166 111 82 chr4 136898784 136898831 -65429516 - MER31B LTR ERV1 -421 45 1 375 109 0 78 chr4 136898837 136898901 -65429446 + MER45 DNA AcHobo 1523 1581 0 1222 125 0 22 chr4 136899285 136899469 -65428878 + AluSg/x SINE Alu 117 296 -16 1784 169 93 9 chr4 136899749 136900093 -65428254 + MSTD LTR MaLR 1 373 -23 2170 111 0 29 chr4 136900093 136900400 -65427947 + AluSx SINE Alu 9 306 -6 2289 112 0 3 chr4 136900400 136900703 -65427644 + AluSg SINE Alu 1 302 -8 2333 104 0 0 chr4 136902076 136902383 -65425964 - AluSc SINE Alu -1 308 2 1573 108 0 5 chr4 136902871 136903083 -65425264 - AluSx SINE Alu 0 312 102 875 119 0 15 chr4 136903083 136903217 -65425130 + AluJo SINE Alu 2 133 -169 845 137 0 0 chr4 136903237 136903354 -65424993 - AluSx SINE Alu -196 117 1 347 167 48 36 chr4 136903399 136903483 -65424864 - MLT1H1 LTR MaLR 0 555 471 1836 198 50 88 chr4 136903526 136903598 -65424749 + L1MC5 LINE L1 6957 7030 -931 604 202 0 0 chr4 136903598 136903702 -65424645 + U13 snRNA snRNA 1 104 0 186 43 0 0 chr4 136903709 136903732 -65424615 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 1836 198 50 88 chr4 136903732 136904305 -65424042 + L1MC5 LINE L1 7036 7579 -382 1899 169 16 0 chr4 136904305 136904612 -65423735 + AluJb SINE Alu 1 312 0 1836 198 50 88 chr4 136904612 136904718 -65423629 + L1MC5 LINE L1 7579 7688 -273 918 188 0 0 chr4 136904746 136904895 -65423452 + AluJo SINE Alu 140 288 -24 614 211 48 48 chr4 136904895 136905103 -65423244 + L1MC5 LINE L1 7700 7907 -54 777 290 29 0 chr4 136906799 136907006 -65421341 - MIR SINE MIR -25 237 25 545 82 4 2 chr4 136907254 136907499 -65420848 + AluSg SINE Alu 1 301 -8 1869 143 17 17 chr4 136907511 136907811 -65420536 - AluSq SINE Alu -13 300 1 1983 109 28 3 chr4 136907835 136908120 -65420227 - AluSx SINE Alu -20 292 1 997 205 5 5 chr4 136908395 136908619 -65419728 + AluSp SINE Alu 73 296 -17 2088 117 7 0 chr4 136908926 136909217 -65419130 - AluSq SINE Alu -20 293 1 1795 175 0 3 chr4 136909238 136909524 -65418823 - AluJb SINE Alu -27 285 1 301 272 187 42 chr4 136909529 136909766 -65418581 - L2 LINE L2 -263 3050 2779 1290 108 0 0 chr4 136909785 136909952 -65418395 - AluSg/x SINE Alu -12 300 134 2351 96 0 3 chr4 136909952 136910254 -65418093 - AluSq SINE Alu -10 303 3 654 272 121 15 chr4 136910257 136910529 -65417818 - L2 LINE L2 -596 2718 2418 241 364 0 0 chr4 136912528 136912594 -65415753 - L2 LINE L2 -3 3269 3204 978 154 175 31 chr4 136913084 136913370 -65414977 - L1MC3 LINE L1 0 7785 7459 2278 92 3 3 chr4 136913372 136913667 -65414680 + AluSp SINE Alu 1 295 -18 655 83 0 0 chr4 136913587 136913671 -65414676 + AluSp/q SINE Alu 216 299 -14 1923 162 0 3 chr4 136913685 136913988 -65414359 - AluJb SINE Alu 0 312 11 1190 151 130 164 chr4 136913988 136914197 -65414150 - L1MC3 LINE L1 -418 7367 7152 258 207 17 0 chr4 136914197 136914255 -65414092 - MLT1F1 LTR MaLR -474 93 35 1190 151 130 164 chr4 136914255 136914379 -65413968 - L1MC3 LINE L1 -633 7152 7025 2188 89 0 61 chr4 136914379 136914692 -65413655 - AluSg SINE Alu -16 294 1 1190 151 130 164 chr4 136914692 136914831 -65413516 - L1MC3 LINE L1 -760 7025 6855 36 40 0 0 chr4 136915294 136915344 -65413003 + AT_rich Low_complexity Low_complexity 1 50 0 864 146 0 29 chr4 136915347 136915484 -65412863 - FLAM_C SINE Alu 0 133 1 2271 132 0 0 chr4 136915769 136916079 -65412268 + AluSx SINE Alu 1 310 -2 2114 121 0 0 chr4 136916257 136916537 -65411810 + AluSx SINE Alu 1 280 -32 222 37 0 0 chr4 136916539 136916566 -65411781 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 22 56 0 0 chr4 136916799 136916835 -65411512 + AT_rich Low_complexity Low_complexity 1 36 0 29 78 0 0 chr4 136916940 136917004 -65411343 + AT_rich Low_complexity Low_complexity 1 64 0 1811 83 0 4 chr4 136917090 136917307 -65411040 + AluSg/x SINE Alu 66 283 -29 234 0 0 0 chr4 136917307 136917333 -65411014 + (CA)n Simple_repeat Simple_repeat 1 26 0 1811 83 0 4 chr4 136917333 136917344 -65411003 + AluSg/x SINE Alu 283 293 -19 282 29 0 0 chr4 136918131 136918166 -65410181 + (TA)n Simple_repeat Simple_repeat 1 35 0 2202 79 0 49 chr4 136918166 136918471 -65409876 - AluY SINE Alu -21 290 1 2024 142 0 3 chr4 136918519 136918814 -65409533 - AluSg SINE Alu -16 294 1 282 95 0 0 chr4 136919205 136919247 -65409100 + (A)n Simple_repeat Simple_repeat 1 42 0 225 0 0 0 chr4 136919526 136919551 -65408796 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2042 134 0 3 chr4 136919557 136919848 -65408499 - AluSp SINE Alu -23 290 1 2133 116 10 13 chr4 136919859 136920169 -65408178 - AluSp SINE Alu -4 309 1 2285 106 0 0 chr4 136920170 136920463 -65407884 - AluSx SINE Alu -15 297 5 1064 152 0 6 chr4 136920646 136920810 -65407537 - AluJb SINE Alu -8 304 142 2121 134 3 10 chr4 136921448 136921761 -65406586 + AluSq SINE Alu 1 311 -2 1097 158 11 6 chr4 136922708 136922891 -65405456 + AluJb SINE Alu 124 307 -5 1441 135 0 5 chr4 136922906 136923114 -65405233 + AluSg/x SINE Alu 83 289 -21 2363 98 0 10 chr4 136923390 136923696 -65404651 + AluSx SINE Alu 1 303 -9 340 103 15 15 chr4 136924281 136924349 -65403998 + (GA)n Simple_repeat Simple_repeat 1 68 0 1828 131 57 3 chr4 136924571 136924854 -65403493 - AluJb SINE Alu -14 298 1 1622 214 48 39 chr4 136924854 136925145 -65403202 - MLT1C LTR MaLR 0 467 180 180 0 0 0 chr4 136925145 136925165 -65403182 + (TTC)n Simple_repeat Simple_repeat 2 21 0 1828 93 32 97 chr4 136925167 136925478 -65402869 - AluSx SINE Alu -21 291 1 1622 214 48 39 chr4 136925478 136925646 -65402701 - MLT1C LTR MaLR -287 180 1 1425 144 63 0 chr4 136925759 136925981 -65402366 + AluSq SINE Alu 45 280 -33 186 71 0 0 chr4 136925983 136926011 -65402336 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 2229 128 0 0 chr4 136926052 136926350 -65401997 - AluSx SINE Alu -14 298 1 968 120 0 0 chr4 136926358 136926483 -65401864 - AluSq/x SINE Alu -188 125 1 1206 174 19 42 chr4 136926485 136926796 -65401551 + MER31-int LTR ERV1 1188 1491 -3445 1641 168 11 7 chr4 136926796 136927081 -65401266 + AluJb SINE Alu 1 286 -26 3313 173 58 128 chr4 136927093 136928323 -65400024 + MER31-int LTR ERV1 1477 2619 -2317 2104 102 32 3 chr4 136928328 136928611 -65399736 + AluSx SINE Alu 4 294 -18 2143 89 4 0 chr4 136928723 136929016 -65399331 + AluSx SINE Alu 23 316 0 1516 200 48 0 chr4 136929117 136929407 -65398940 + AluJo SINE Alu 1 304 -8 1832 236 54 16 chr4 136929496 136929941 -65398406 + MLT1F LTR MaLR 2 463 -79 538 158 0 59 chr4 136929956 136929985 -65398362 + MLT1F LTR MaLR 437 466 -76 2250 87 6 19 chr4 136929985 136930297 -65398050 - AluSg SINE Alu -2 308 1 538 158 0 59 chr4 136930297 136930407 -65397940 + MLT1F LTR MaLR 466 540 -2 763 263 84 28 chr4 136930770 136931090 -65397257 + L2 LINE L2 2306 2643 -671 981 199 58 80 chr4 136931118 136931261 -65397086 - L1ME LINE L1 -447 5719 5574 2269 96 0 3 chr4 136931261 136931552 -65396795 + AluSc SINE Alu 5 294 -15 981 199 58 80 chr4 136931552 136931563 -65396784 - L1ME LINE L1 -592 5574 5564 1858 142 3 30 chr4 136931563 136931866 -65396481 - AluJb SINE Alu -12 300 6 981 199 58 80 chr4 136931866 136932021 -65396326 - L1ME LINE L1 -602 5564 5416 * 1940 188 48 8 chr4 136932012 136932412 -65395935 - L1ME2 LINE L1 -19 6145 5730 433 173 0 0 chr4 136932408 136932483 -65395864 + L1ME LINE L1 5623 5697 -467 * 472 323 0 6 chr4 136932484 136932651 -65395696 + L2 LINE L2 2640 2805 -509 517 212 127 1 chr4 136932657 136932811 -65395536 + MER5B DNA MER1_type 1 182 -7 773 273 55 52 chr4 136932880 136933119 -65395228 + L2 LINE L2 2900 3142 -171 1381 194 58 48 chr4 136933119 136933428 -65394919 - AluJo SINE Alu 0 312 1 773 273 55 52 chr4 136933428 136933591 -65394756 + L2 LINE L2 3142 3303 -10 2485 61 3 0 chr4 136934345 136934641 -65393706 - AluY SINE Alu -14 297 1 1234 65 7 0 chr4 136934641 136934795 -65393552 - AluY SINE Alu -8 303 149 400 341 106 21 chr4 136934911 136935195 -65393152 + L3 LINE CR1 670 977 -600 369 241 198 43 chr4 136935379 136935566 -65392781 - MIR SINE MIR -39 223 8 344 266 147 73 chr4 136935739 136935916 -65392431 + MLT1L LTR MaLR 1 190 -425 2247 102 0 0 chr4 136936063 136936371 -65391976 - AluSx SINE Alu 0 308 1 354 227 0 0 chr4 136936371 136936437 -65391910 + Charlie1 DNA MER1_type 2696 2761 0 183 279 152 0 chr4 136936518 136936597 -65391750 + L2 LINE L2 2665 2755 -559 207 0 0 0 chr4 136936756 136936779 -65391568 + (T)n Simple_repeat Simple_repeat 1 23 0 589 267 91 33 chr4 136936795 136937005 -65391342 - LTR33A LTR ERVL -90 433 212 208 374 14 22 chr4 136937050 136937189 -65391158 + L2 LINE L2 2954 3091 -181 1304 157 45 5 chr4 136937289 136937512 -65390835 - AluJo SINE Alu -16 296 65 1680 161 74 15 chr4 136937526 136937862 -65390485 - L1MB8 LINE L1 -7 6171 5816 22 0 0 0 chr4 136938043 136938065 -65390282 + AT_rich Low_complexity Low_complexity 1 22 0 945 118 16 96 chr4 136938250 136938315 -65390032 + MER5A DNA MER1_type 18 87 -102 1590 142 40 46 chr4 136938315 136938617 -65389730 + AluJo SINE Alu 5 304 -8 945 118 16 96 chr4 136938617 136938738 -65389609 + MER5A DNA MER1_type 87 189 0 1595 181 35 7 chr4 136939926 136940213 -65388134 + AluJb SINE Alu 1 295 -17 1831 123 15 0 chr4 136940720 136940988 -65387359 - AluSx SINE Alu -3 309 38 26 30 0 0 chr4 136941234 136941267 -65387080 + AT_rich Low_complexity Low_complexity 1 33 0 672 219 0 0 chr4 136941298 136941435 -65386912 + AluSp/q SINE Alu 174 310 -3 225 329 36 7 chr4 136941945 136942082 -65386265 - L1ME LINE L1 -559 5603 5463 2248 95 0 3 chr4 136942097 136942380 -65385967 - AluSx SINE Alu -30 282 1 2168 129 7 0 chr4 136942797 136943106 -65385241 - AluSp SINE Alu -2 311 1 403 90 0 15 chr4 136944249 136944309 -65384038 - L1MD2 LINE L1 -8 6351 6291 2392 109 0 0 chr4 136944309 136944620 -65383727 + AluSx SINE Alu 1 311 -1 4367 179 31 48 chr4 136944712 136945218 -65383129 - L1MC4a LINE L1 -25 7783 7270 1969 141 0 0 chr4 136945218 136945501 -65382846 - AluSx SINE Alu -29 283 1 4367 179 31 48 chr4 136945501 136945907 -65382440 - L1MC4a LINE L1 -538 7270 6859 2153 107 7 13 chr4 136945907 136946215 -65382132 - AluSc SINE Alu -3 306 1 4367 179 31 48 chr4 136946215 136946527 -65381820 - L1MC4a LINE L1 -949 6859 4988 748 266 12 36 chr4 136946719 136946967 -65381380 + MIR SINE MIR 14 255 -7 325 258 97 24 chr4 136947356 136947480 -65380867 + L1ME4a LINE L1 5557 5689 -432 2304 96 3 13 chr4 136947481 136947794 -65380553 + AluSq SINE Alu 1 310 -3 2242 121 0 0 chr4 136947861 136948166 -65380181 + AluSx SINE Alu 7 311 -1 3181 105 67 8 chr4 136948244 136948722 -65379625 - MER84 LTR ERV1 0 507 2 395 139 42 14 chr4 136948722 136948794 -65379553 - MER84 LTR ERVI -433 74 1 268 295 32 26 chr4 136948878 136949034 -65379313 + L1ME4a LINE L1 5889 6045 -76 1997 126 7 3 chr4 136949063 136949348 -65378999 + AluSx SINE Alu 1 286 -26 21 0 0 0 chr4 136949348 136949369 -65378978 + AT_rich Low_complexity Low_complexity 1 21 0 254 298 132 8 chr4 136949458 136949579 -65378768 - L2 LINE L2 0 3272 3137 672 283 163 28 chr4 136949985 136950550 -65377797 - L2 LINE L2 -584 2730 2090 678 260 140 10 chr4 136950912 136951212 -65377135 - L2 LINE L2 -1217 2097 1759 208 296 130 0 chr4 136951551 136951666 -65376681 - L2 LINE L2 -2007 1307 1178 408 312 10 24 chr4 136951799 136952004 -65376343 + L2 LINE L2 2141 2342 -972 234 317 79 0 chr4 136952131 136952232 -65376115 + L2 LINE L2 2424 2532 -782 200 233 0 67 chr4 136953187 136953247 -65375100 + L2 LINE L2 3006 3061 -252 208 198 116 58 chr4 136953358 136953444 -65374903 + L2 LINE L2 3222 3312 -1 707 185 83 0 chr4 136953512 136953669 -65374678 - MER5A DNA MER1_type -1 188 19 291 318 23 40 chr4 136953769 136953942 -65374405 - L2 LINE L2 -2422 892 723 26 76 0 13 chr4 136954706 136954729 -65373618 + AT_rich Low_complexity Low_complexity 1 23 -55 2083 111 10 14 chr4 136954729 136954885 -65373462 - AluSp SINE Alu -23 290 134 2414 98 0 0 chr4 136954885 136955191 -65373156 - AluSg SINE Alu -3 307 2 2083 111 10 14 chr4 136955191 136955323 -65373024 - AluSp SINE Alu -179 134 3 26 76 0 13 chr4 136955323 136955378 -65372969 + AT_rich Low_complexity Low_complexity 23 78 0 1797 163 0 7 chr4 136955530 136955825 -65372522 + AluJb SINE Alu 4 296 -16 223 241 126 0 chr4 136956631 136956718 -65371629 - MIR3 SINE MIR -1 207 110 2492 48 0 0 chr4 136956995 136957286 -65371061 - AluY SINE Alu -20 291 1 316 235 77 65 chr4 136957455 136957625 -65370722 - MIR SINE MIR -79 183 12 206 255 0 0 chr4 136957649 136957700 -65370647 + (TAA)n Simple_repeat Simple_repeat 2 52 0 2250 78 3 3 chr4 136958052 136958356 -65369991 - AluSp SINE Alu 0 304 1 27 29 0 0 chr4 136959331 136959365 -65368982 + GC_rich Low_complexity Low_complexity 1 34 0 219 244 49 0 chr4 136959436 136959518 -65368829 + (CG)n Simple_repeat Simple_repeat 1 86 0 267 31 0 0 chr4 136959528 136959560 -65368787 + (CGG)n Simple_repeat Simple_repeat 3 34 0 216 0 0 0 chr4 136960006 136960030 -65368317 + (T)n Simple_repeat Simple_repeat 1 24 0 186 43 0 0 chr4 136960288 136960311 -65368036 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 43 63 0 27 chr4 136961176 136961287 -65367060 + GC_rich Low_complexity Low_complexity 1 108 0 189 0 0 0 chr4 136961853 136961874 -65366473 + (GGA)n Simple_repeat Simple_repeat 1 21 0 2482 70 0 19 chr4 136962963 136963276 -65365071 - AluSg SINE Alu -3 307 1 241 245 223 22 chr4 136963938 136964077 -65364270 - L1ME4a LINE L1 -11 6110 5944 2408 73 17 3 chr4 136964116 136964418 -65363929 - AluSq SINE Alu -7 306 1 2121 46 3 149 chr4 136964606 136964954 -65363393 - AluY SINE Alu -13 298 2 1799 144 74 0 chr4 136966428 136966713 -65361634 - AluSx SINE Alu -6 306 1 504 133 67 100 chr4 136966755 136966875 -65361472 - AluJb SINE Alu -179 133 18 2234 114 0 0 chr4 136967679 136967976 -65360371 - AluSx SINE Alu -15 297 1 953 240 132 4 chr4 136968143 136968401 -65359946 - MER58B DNA MER1_type -14 327 37 1000 177 126 5 chr4 136968422 136968637 -65359710 - AluJo SINE Alu -27 285 45 285 54 0 0 chr4 136968795 136968832 -65359515 - AluSp/q SINE Alu -28 275 239 565 187 81 0 chr4 136968833 136968956 -65359391 - AluJb SINE Alu -18 294 162 2310 114 0 0 chr4 136969670 136969967 -65358380 - AluSx SINE Alu -15 297 1 2270 75 0 81 chr4 136971043 136971377 -65356970 - AluSq SINE Alu -6 307 1 1076 141 0 0 chr4 136971776 136971932 -65356415 + AluSg/x SINE Alu 135 290 -20 2434 56 7 26 chr4 136971986 136972290 -65356057 + AluSp SINE Alu 1 298 -15 2194 62 43 43 chr4 136973692 136973997 -65354350 + AluY SINE Alu 1 305 -6 1975 156 3 3 chr4 136974594 136974895 -65353452 - AluSx SINE Alu -11 301 1 206 261 160 17 chr4 136975163 136975282 -65353065 + L2 LINE L2 3123 3258 -55 402 213 0 0 chr4 136975830 136975905 -65352442 + MER31A LTR ERV1 351 425 -60 1775 117 3 129 chr4 136975922 136976256 -65352091 - AluSq SINE Alu -21 292 1 1266 179 145 66 chr4 136976378 136976820 -65351527 + MER31A LTR ERV1 1 477 -8 720 175 7 15 chr4 136978362 136978499 -65349848 - AluJo SINE Alu -175 137 2 415 181 81 124 chr4 136979088 136979347 -65349000 - MER34 LTR ERV1 0 542 295 2180 125 0 0 chr4 136979435 136979731 -65348616 - AluSg SINE Alu -14 296 1 183 80 0 0 chr4 136979785 136979810 -65348537 + (TG)n Simple_repeat Simple_repeat 2 26 0 2217 90 14 0 chr4 136979810 136980089 -65348258 - AluSx SINE Alu -29 283 1 289 224 9 84 chr4 136980616 136980723 -65347624 + MIR3 SINE MIR 86 184 -24 2142 79 32 7 chr4 136982978 136983258 -65345089 + AluSc SINE Alu 2 288 -21 569 126 19 29 chr4 136983525 136983628 -65344719 + MER3 DNA MER1_type 108 209 0 1549 183 87 33 chr4 136983696 136984062 -65344285 - MLT1B LTR MaLR -2 388 3 2216 99 3 10 chr4 136984086 136984390 -65343957 - AluY SINE Alu -9 302 1 818 128 0 30 chr4 136984423 136984556 -65343791 + FLAM_C SINE Alu 5 133 0 1824 132 108 72 chr4 136985734 136986152 -65342195 - Tigger2a DNA MER2_type 0 434 2 805 99 0 151 chr4 136986293 136986445 -65341902 - AluSg/x SINE Alu -13 297 169 1274 193 121 68 chr4 136988995 136989435 -65338912 - L1ME2 LINE L1 -9 6155 5693 276 308 109 32 chr4 136991025 136991428 -65336919 - L2 LINE L2 -835 2479 2046 2076 139 7 0 chr4 136991845 136992155 -65336192 - AluSx SINE Alu 0 312 1 768 202 10 71 chr4 136992662 136992860 -65335487 + MIR SINE MIR 77 262 0 2049 131 0 30 chr4 136995188 136995493 -65332854 + AluSx SINE Alu 1 296 -16 2220 104 7 10 chr4 136997731 136998030 -65330317 - AluSx SINE Alu -10 302 5 248 226 16 48 chr4 136998965 136999027 -65329320 - MIR3 SINE MIR -49 159 100 407 328 40 0 chr4 136999357 136999534 -65328813 + MER117 DNA MER1_type 3 186 -11 1923 133 0 60 chr4 136999567 136999883 -65328464 + AluSx SINE Alu 1 297 -15 1958 143 38 0 chr4 137000486 137000773 -65327574 - AluSx SINE Alu -12 300 3 1278 191 40 12 chr4 137001238 137001489 -65326858 - AluJb SINE Alu -28 284 27 1689 194 64 60 chr4 137002196 137002472 -65325875 - MLT1C LTR MaLR 0 467 187 1710 112 151 0 chr4 137002472 137002731 -65325616 - AluSg SINE Alu -12 298 1 1689 194 64 60 chr4 137002731 137002907 -65325440 - MLT1C LTR MaLR -280 187 13 23 33 0 0 chr4 137004466 137004496 -65323851 + AT_rich Low_complexity Low_complexity 1 30 0 1805 177 3 3 chr4 137005363 137005674 -65322673 - AluJo SINE Alu -1 311 1 2437 62 0 23 chr4 137008159 137008463 -65319884 - AluSg SINE Alu -13 297 1 471 225 0 0 chr4 137008727 137008865 -65319482 + (TG)n Simple_repeat Simple_repeat 2 139 0 525 265 0 0 chr4 137008887 137009172 -65319175 + (TG)n Simple_repeat Simple_repeat 1 285 0 853 142 0 0 chr4 137010938 137011065 -65317282 + FLAM_C SINE Alu 1 127 -6 228 67 0 0 chr4 137012450 137012480 -65315867 + (TG)n Simple_repeat Simple_repeat 1 30 0 2115 114 35 0 chr4 137013708 137013997 -65314350 - AluSx SINE Alu -13 299 1 196 175 75 0 chr4 137014834 137014874 -65313473 + MER5A DNA MER1_type 46 88 -101 200 308 145 13 chr4 137017728 137017887 -65310460 + MIR SINE MIR 49 228 -34 190 306 92 0 chr4 137018196 137018294 -65310053 + MIR3 SINE MIR 92 198 -10 529 225 70 8 chr4 137020069 137020198 -65308149 - MER112 DNA MER1_type -25 235 99 307 232 18 116 chr4 137020331 137020443 -65307904 - MIR SINE MIR 0 262 162 432 130 0 0 chr4 137022806 137022875 -65305472 + (A)n Simple_repeat Simple_repeat 1 69 0 209 95 27 68 chr4 137024036 137024110 -65304237 + (CAAAAA)n Simple_repeat Simple_repeat 2 72 0 373 317 77 41 chr4 137025033 137025279 -65303068 + MIR SINE MIR 8 262 0 27 0 0 0 chr4 137025384 137025411 -65302936 + AT_rich Low_complexity Low_complexity 1 27 0 208 152 22 22 chr4 137025500 137025546 -65302801 - MIR SINE MIR -106 102 57 765 192 138 9 chr4 137026725 137026928 -65301419 - MIR SINE MIR -24 238 19 2248 102 0 3 chr4 137026953 137027247 -65301100 + AluSg SINE Alu 1 293 -17 1200 40 13 0 chr4 137028540 137028691 -65299656 + L1PA5 LINE L1 6001 6153 -1 186 453 0 0 chr4 137028897 137028972 -65299375 + L3 LINE CR1 35 109 -1468 501 298 105 6 chr4 137029069 137029240 -65299107 + MIR SINE MIR 61 248 -14 1094 163 6 2 chr4 137029655 137030820 -65297527 + ALR/Alpha Satellite centromeric 1 1169 -36 1175 142 5 1 chr4 137030920 137031972 -65296375 - ALR/Alpha Satellite centromeric 0 1055 1 1179 155 2 1 chr4 137032082 137033422 -65294925 + ALR/Alpha Satellite centromeric 1 1341 -31 12586 37 0 1 chr4 137033522 137035071 -65293276 + L1P LINE L1 2898 4444 -1702 2423 63 0 3 chr4 137035171 137035470 -65292877 - AluY SINE Alu -13 298 1 1921 112 0 64 chr4 137035497 137035810 -65292537 - AluSg SINE Alu -17 293 1 304 350 129 23 chr4 137036284 137036678 -65291669 + L3 LINE CR1 270 705 -872 721 240 191 29 chr4 137036760 137037006 -65291341 + L3 LINE CR1 722 1007 -570 408 327 134 40 chr4 137038853 137039169 -65289178 - L2 LINE L2 0 3313 2941 2183 108 13 0 chr4 137039169 137039476 -65288871 + AluSx SINE Alu 2 312 0 408 327 134 40 chr4 137039476 137039605 -65288742 - L2 LINE L2 -372 2941 2826 1307 96 0 21 chr4 137039687 137039875 -65288472 + L1PA7 LINE L1 5971 6154 0 246 340 123 9 chr4 137039958 137040064 -65288283 + L2 LINE L2 2576 2693 -621 1398 194 84 18 chr4 137040972 137041245 -65287102 - AluJb SINE Alu -19 293 3 933 273 164 25 chr4 137041601 137042308 -65286039 - L1MC4a LINE L1 -1750 6058 5254 21 0 0 0 chr4 137042392 137042413 -65285934 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 137042779 137042801 -65285546 + AT_rich Low_complexity Low_complexity 1 22 0 226 332 162 35 chr4 137042896 137043125 -65285222 + L3b LINE CR1 1283 1540 -43 616 196 65 26 chr4 137043302 137043481 -65284866 - MIR SINE MIR -41 221 36 23 86 0 0 chr4 137043794 137043852 -65284495 + AT_rich Low_complexity Low_complexity 1 58 0 670 225 152 6 chr4 137044295 137044428 -65283919 + MER3 DNA MER1_type 1 168 -41 210 37 0 0 chr4 137044428 137044455 -65283892 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 670 225 152 6 chr4 137044455 137044499 -65283848 + MER3 DNA MER1_type 168 204 -5 1556 195 0 23 chr4 137044507 137044814 -65283533 - AluJb SINE Alu -6 306 7 335 173 133 0 chr4 137045361 137045436 -65282911 - MER5A DNA MER1_type -22 167 83 1874 165 86 25 chr4 137045517 137045916 -65282431 + MLT1C LTR MaLR 38 593 0 595 154 45 0 chr4 137047624 137047734 -65280613 + L1MB2 LINE L1 6057 6171 0 2112 126 3 3 chr4 137047946 137048247 -65280100 - AluSx SINE Alu -11 301 1 242 314 182 16 chr4 137048956 137049077 -65279270 - L2 LINE L2 -4 3268 3128 684 246 17 114 chr4 137049738 137049851 -65278496 - MIR SINE MIR 0 262 140 2340 73 3 0 chr4 137049851 137050140 -65278207 - AluY SINE Alu -21 290 1 684 246 17 114 chr4 137050140 137050231 -65278116 - MIR SINE MIR -122 140 90 1893 157 0 7 chr4 137050231 137050541 -65277806 - AluJb SINE Alu 0 308 1 684 246 17 114 chr4 137050541 137050623 -65277724 - MIR SINE MIR -172 90 2 261 0 0 0 chr4 137050663 137050692 -65277655 + (CA)n Simple_repeat Simple_repeat 2 30 0 303 363 74 42 chr4 137050815 137050952 -65277395 + L2 LINE L2 2332 2463 -851 2218 102 3 0 chr4 137050952 137051255 -65277092 - AluSx SINE Alu -8 304 1 303 363 74 42 chr4 137051255 137051401 -65276946 + L2 LINE L2 2463 2624 -690 43676 42 4 1 chr4 137051829 137057961 -65270386 + L1PA4 LINE L1 2 6152 -3 192 245 0 0 chr4 137058120 137058173 -65270174 + (CATA)n Simple_repeat Simple_repeat 3 55 0 1655 156 52 14 chr4 137058194 137058482 -65269865 - AluJo SINE Alu -11 301 3 5449 185 94 40 chr4 137058554 137059719 -65268628 - Tigger3b DNA MER2_type -1 1230 3 396 306 35 29 chr4 137060213 137060386 -65267961 + L3b LINE CR1 1342 1515 -68 254 172 16 16 chr4 137060856 137060920 -65267427 - L1PA16 LINE L1 -159 6007 5944 1539 282 100 62 chr4 137061247 137062126 -65266221 + L2 LINE L2 2120 3035 -237 2399 71 0 3 chr4 137062524 137062819 -65265528 - AluY SINE Alu -17 294 1 627 332 130 46 chr4 137063043 137063998 -65264349 - L2 LINE L2 -1 3271 2242 192 77 0 0 chr4 137064702 137064728 -65263619 + (A)n Simple_repeat Simple_repeat 1 26 0 292 255 21 21 chr4 137065191 137065285 -65263062 + MLT1I LTR MaLR 281 374 -35 479 312 173 51 chr4 137065324 137065573 -65262774 + L2 LINE L2 2831 3048 -265 1710 182 10 0 chr4 137065573 137065869 -65262478 - AluJo SINE Alu -13 299 1 479 312 173 51 chr4 137065869 137066048 -65262299 + L2 LINE L2 3048 3311 -2 192 368 31 25 chr4 137066220 137066383 -65261964 - L2 LINE L2 -570 2744 2581 793 311 49 35 chr4 137066412 137066817 -65261530 - L1MC/D LINE L1 -2134 5674 5264 21 36 0 0 chr4 137066978 137067006 -65261341 + AT_rich Low_complexity Low_complexity 1 28 0 2236 96 0 7 chr4 137067303 137067595 -65260752 + AluSq SINE Alu 1 290 -23 25 0 0 0 chr4 137067904 137067929 -65260418 + AT_rich Low_complexity Low_complexity 1 25 0 30 59 0 0 chr4 137068715 137068766 -65259581 + AT_rich Low_complexity Low_complexity 1 51 0 371 119 15 0 chr4 137068993 137069060 -65259287 + (TCC)n Simple_repeat Simple_repeat 3 70 0 1419 259 141 5 chr4 137069563 137070011 -65258336 - L2 LINE L2 -1744 1570 1062 501 225 29 81 chr4 137070016 137070225 -65258122 + L2 LINE L2 3047 3244 -69 2308 75 7 3 chr4 137070407 137070701 -65257646 + AluY SINE Alu 2 296 -15 252 0 0 0 chr4 137072037 137072065 -65256282 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 403 306 117 0 chr4 137072065 137072176 -65256171 - L2 LINE L2 -13 3259 3136 201 371 16 0 chr4 137072284 137072346 -65256001 + L2 LINE L2 3187 3249 -23 1224 212 31 29 chr4 137073170 137073323 -65255024 + MER74A LTR ERVL 16 167 -391 198 0 0 0 chr4 137073323 137073345 -65255002 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 1224 212 31 29 chr4 137073345 137073620 -65254727 + MER74A LTR ERVL 167 524 -34 1266 188 14 21 chr4 137074595 137074882 -65253465 + L1PA15 LINE L1 1862 2146 -4641 14717 186 21 7 chr4 137074885 137076647 -65251700 + L1PA15 LINE L1 2766 4501 -2315 1688 154 31 0 chr4 137076647 137076907 -65251440 - AluSx SINE Alu -44 268 1 14717 186 21 7 chr4 137076907 137079130 -65249217 + L1PA15 LINE L1 4501 6809 -7 348 338 75 28 chr4 137079140 137079353 -65248994 + L1MEd LINE L1 1036 1258 -4947 1518 209 111 45 chr4 137079373 137079487 -65248860 - L1ME1 LINE L1 -6 6160 6055 2352 96 3 0 chr4 137079487 137079790 -65248557 + AluSx SINE Alu 1 304 -8 1518 209 111 45 chr4 137079790 137080144 -65248203 - L1ME1 LINE L1 -111 6055 5661 1098 179 19 24 chr4 137080146 137080358 -65247989 - AluJo SINE Alu -20 292 82 330 271 31 10 chr4 137080359 137080455 -65247892 - L1ME1 LINE L1 -490 5676 5579 * 608 166 175 91 chr4 137080450 137080591 -65247756 - L1ME1 LINE L1 -841 5305 5177 1682 174 30 10 chr4 137080591 137080896 -65247451 - AluSx SINE Alu -1 311 1 608 166 175 91 chr4 137080896 137081074 -65247273 - L1ME1 LINE L1 -969 5177 4959 1559 254 63 64 chr4 137081075 137081627 -65246720 + MLT1F1 LTR MaLR 2 562 -5 587 268 62 45 chr4 137081637 137081670 -65246677 - L1MEc LINE L1 -5063 1333 1302 1931 115 68 0 chr4 137081670 137081948 -65246399 - AluSx SINE Alu -15 297 1 587 268 62 45 chr4 137081948 137082336 -65246011 - L1MEc LINE L1 -5094 1302 905 36 0 0 0 chr4 137082336 137082372 -65245975 + AT_rich Low_complexity Low_complexity 1 36 0 259 206 0 16 chr4 137082474 137082537 -65245810 - L1MEc LINE L1 -5663 733 672 658 291 25 0 chr4 137082731 137082927 -65245420 + L1MEd LINE L1 1555 1755 -4641 458 302 73 40 chr4 137083118 137083446 -65244901 + L1MEd LINE L1 1929 2267 -4129 2861 260 106 57 chr4 137083563 137083629 -65244718 + L1MEd LINE L1 2938 2999 -3216 1733 173 0 14 chr4 137083629 137083918 -65244429 + AluJb SINE Alu 17 301 -11 2861 260 106 57 chr4 137083918 137084453 -65243894 + L1MEd LINE L1 2999 3506 -2709 183 42 0 0 chr4 137084453 137084477 -65243870 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2861 260 106 57 chr4 137084477 137084902 -65243445 + L1MEd LINE L1 3506 3909 -2306 2106 92 0 0 chr4 137084902 137085173 -65243174 + AluSq SINE Alu 29 299 -14 2861 260 106 57 chr4 137085173 137086133 -65242214 + L1MEd LINE L1 3909 5024 -1191 581 170 19 0 chr4 137086156 137086262 -65242085 - MLT1A2 LTR MaLR 0 374 267 1884 217 103 29 chr4 137086340 137086865 -65241482 + MLT1F1 LTR MaLR 4 567 0 2256 78 0 0 chr4 137087785 137088086 -65240261 - AluY SINE Alu 0 301 1 3908 162 32 4 chr4 137088777 137089505 -65238842 + L1 LINE L1 3978 4725 -1421 1018 212 13 112 chr4 137089546 137089938 -65238409 - L1MC5 LINE L1 -884 7077 6725 599 304 129 64 chr4 137089943 137090725 -65237622 - L1MC4a LINE L1 -1133 6675 5843 1777 257 95 29 chr4 137090727 137091497 -65236850 - L1MC4a LINE L1 -1538 4608 3788 336 304 9 9 chr4 137091623 137091735 -65236612 + L2 LINE L2 1856 1967 -1347 817 293 70 4 chr4 137091743 137091985 -65236362 + MIR SINE MIR 5 262 0 588 344 87 13 chr4 137092026 137092337 -65236010 + L2 LINE L2 2039 2372 -942 291 280 65 32 chr4 137092349 137092442 -65235905 + L2 LINE L2 2579 2674 -640 249 53 0 0 chr4 137092448 137092486 -65235861 - L1MC2 LINE L1 -11 6333 6296 193 312 39 13 chr4 137092520 137092597 -65235750 + L2 LINE L2 2680 2758 -556 368 239 23 11 chr4 137092654 137092742 -65235605 - MER58B DNA MER1_type -1 340 252 2383 93 0 3 chr4 137093321 137093631 -65234716 + AluSg SINE Alu 1 309 -1 929 220 0 0 chr4 137094153 137094353 -65233994 + MER105 DNA DNA 5 204 0 1967 119 4 0 chr4 137095024 137095293 -65233054 + AluSq SINE Alu 1 270 -43 201 39 0 0 chr4 137095303 137095329 -65233018 + (CAA)n Simple_repeat Simple_repeat 2 27 0 254 152 172 15 chr4 137097093 137097228 -65231119 - L1ME LINE L1 -315 5806 5637 815 132 16 0 chr4 137097425 137097554 -65230793 - THE1B LTR MaLR -233 131 1 717 236 101 16 chr4 137097588 137097846 -65230501 - L1ME LINE L1 -611 5551 5272 1452 276 78 11 chr4 137097848 137098421 -65229926 - L1ME LINE L1 -837 5309 4698 185 136 45 23 chr4 137098525 137098569 -65229778 + L2 LINE L2 3265 3309 -4 511 251 51 31 chr4 137100370 137100565 -65227782 + MLT2E LTR ERVL 428 626 -2 399 223 74 126 chr4 137100570 137100920 -65227427 + L1MC5 LINE L1 7183 7514 -447 25 75 0 0 chr4 137101768 137101821 -65226526 + AT_rich Low_complexity Low_complexity 1 53 0 858 124 7 22 chr4 137102689 137102826 -65225521 + AluJo SINE Alu 78 212 -100 2351 68 17 0 chr4 137102976 137103271 -65225076 - AluY SINE Alu -11 300 1 645 187 80 7 chr4 137103360 137103510 -65224837 - MIR SINE MIR 0 262 102 7289 147 5 9 chr4 137104101 137105346 -65223001 + L1P LINE L1 1081 2320 -3826 224 39 0 0 chr4 137105347 137105373 -65222974 + (A)n Simple_repeat Simple_repeat 1 26 0 34 72 0 0 chr4 137105676 137105745 -65222602 + AT_rich Low_complexity Low_complexity 1 69 0 2103 75 0 18 chr4 137105833 137106112 -65222235 - AluY SINE Alu 0 311 38 1612 193 91 25 chr4 137106173 137106614 -65221733 + Charlie1b DNA MER1_type 52 521 -2 314 320 131 16 chr4 137106965 137107087 -65221260 - L2 LINE L2 0 3272 3137 495 311 24 48 chr4 137109251 137109457 -65218890 - MIR3 SINE MIR -7 201 1 2389 73 3 0 chr4 137110581 137110881 -65217466 + AluSp SINE Alu 1 301 -12 2150 109 3 0 chr4 137110967 137111252 -65217095 + AluSx SINE Alu 1 286 -26 315 219 18 16 chr4 137112299 137112413 -65215934 + MIR SINE MIR 54 254 -8 1887 110 0 7 chr4 137112856 137113129 -65215218 + AluSg SINE Alu 40 310 0 912 107 0 13 chr4 137114144 137114294 -65214053 - L1PA4 LINE L1 -1 6154 6007 14534 102 9 9 chr4 137114399 137117490 -65210857 + L1PA8 LINE L1 3106 6172 0 419 313 108 42 chr4 137117500 137117788 -65210559 - L2 LINE L2 -167 3146 2840 189 0 0 0 chr4 137118539 137118560 -65209787 + (TA)n Simple_repeat Simple_repeat 1 21 0 944 241 18 22 chr4 137118665 137118889 -65209458 - MER58A DNA MER1_type -1 223 1 315 293 12 12 chr4 137118956 137119038 -65209309 + L2 LINE L2 3208 3289 -24 970 297 122 40 chr4 137119055 137119556 -65208791 - MLT1L LTR MaLR -73 542 1 186 43 0 0 chr4 137119716 137119739 -65208608 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 23 33 0 0 chr4 137119797 137119827 -65208520 + AT_rich Low_complexity Low_complexity 1 30 0 185 81 0 27 chr4 137120767 137120804 -65207543 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 240 267 67 8 chr4 137121007 137121127 -65207220 + L1ME LINE L1 5036 5162 -984 671 280 36 39 chr4 137121763 137121858 -65206489 + L1ME LINE L1 5305 5399 -771 1972 79 0 8 chr4 137121858 137122112 -65206235 + AluY SINE Alu 40 291 -20 671 280 36 39 chr4 137122112 137122352 -65205995 + L1ME LINE L1 5399 5639 -531 779 287 42 17 chr4 137122693 137122930 -65205417 - MIR SINE MIR -15 247 5 270 0 0 0 chr4 137123895 137123925 -65204422 + (CA)n Simple_repeat Simple_repeat 1 30 0 376 250 0 0 chr4 137124384 137124460 -65203887 - AluJ/FRAM SINE Alu -9 293 218 220 130 109 0 chr4 137125559 137125605 -65202742 - L2 LINE L2 0 3313 3263 2172 122 0 3 chr4 137125736 137126039 -65202308 - AluSx SINE Alu -10 302 1 1545 193 42 11 chr4 137126644 137126812 -65201535 - AluJb SINE Alu -18 294 112 2160 87 0 0 chr4 137126812 137127088 -65201259 + AluSc SINE Alu 28 303 -6 1545 193 42 11 chr4 137127088 137127204 -65201143 - AluJb SINE Alu -200 112 1 1017 208 0 44 chr4 137127598 137127824 -65200523 - MER20 DNA MER1_type 0 219 4 411 299 110 43 chr4 137128162 137129183 -65199164 + L1M4 LINE L1 3870 5094 -1052 180 222 37 74 chr4 137129187 137129241 -65199106 + L2 LINE L2 3206 3257 -56 227 282 27 0 chr4 137129280 137129390 -65198957 + L1M4 LINE L1 5100 5212 -934 563 214 32 0 chr4 137130039 137130165 -65198182 - L1ME3A LINE L1 -9 6161 6032 2117 255 95 18 chr4 137130321 137131310 -65197037 - L1ME3A LINE L1 -166 6004 4942 432 274 95 11 chr4 137131331 137131521 -65196826 - L1ME3A LINE L1 -1304 4842 4637 1953 178 37 2 chr4 137131524 137132145 -65196202 - L1M1 LINE L1 -687 5613 4961 7509 30 1 0 chr4 137132145 137133635 -65194712 + L1PA3 LINE L1 4663 6153 -2 1953 178 37 2 chr4 137133635 137133693 -65194654 - L1M1 LINE L1 -1339 4961 4906 19113 108 6 3 chr4 137133716 137137383 -65190964 - L1PA8 LINE L1 -2 6170 2492 194 344 153 6 chr4 137137671 137137834 -65190513 + L2 LINE L2 2295 2481 -833 296 280 160 8 chr4 137137871 137137996 -65190351 + L2 LINE L2 2594 2737 -577 219 69 0 0 chr4 137138132 137138161 -65190186 + (T)n Simple_repeat Simple_repeat 1 29 0 2353 173 75 43 chr4 137138161 137138761 -65189586 - LTR8A LTR ERV1 -98 629 11 385 299 45 30 chr4 137138761 137138895 -65189452 + L2 LINE L2 3137 3272 0 25 0 0 0 chr4 137139018 137139043 -65189304 + AT_rich Low_complexity Low_complexity 1 25 0 361 289 59 40 chr4 137140235 137140286 -65188061 + MIR SINE MIR 20 69 -193 1670 202 5 62 chr4 137140286 137140673 -65187674 - MLT1A1 LTR MaLR 0 365 1 361 289 59 40 chr4 137140673 137140773 -65187574 + MIR SINE MIR 69 174 -88 216 0 0 0 chr4 137141443 137141467 -65186880 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 473 324 188 18 chr4 137141798 137142539 -65185808 + L2 LINE L2 2420 3295 -18 283 208 0 0 chr4 137142663 137142716 -65185631 + L2 LINE L2 3261 3313 0 183 305 48 57 chr4 137143334 137143439 -65184908 + L2 LINE L2 3204 3307 -6 249 375 0 12 chr4 137143599 137143720 -65184627 - MER5A DNA MER1_type -16 173 44 2363 70 0 3 chr4 137144561 137144859 -65183488 + AluY SINE Alu 1 297 -14 514 258 61 42 chr4 137145776 137145985 -65182362 - MIR SINE MIR -49 213 2 494 129 12 0 chr4 137146356 137146441 -65181906 + CT-rich Low_complexity Low_complexity 1 86 0 200 264 19 0 chr4 137146441 137146494 -65181853 + C-rich Low_complexity Low_complexity 6 59 0 204 350 38 0 chr4 137146494 137146574 -65181773 - L2 LINE L2 -2 3270 3188 248 342 18 26 chr4 137147285 137147399 -65180948 - MIR3 SINE MIR -35 173 61 2296 94 0 7 chr4 137147851 137148159 -65180188 - AluSc SINE Alu -3 306 1 376 342 60 10 chr4 137148276 137148475 -65179872 + MIR SINE MIR 54 262 0 2110 99 0 0 chr4 137150298 137150608 -65177739 - AluY SINE Alu 0 310 1 234 297 0 14 chr4 137150655 137150729 -65177618 + L1ME LINE L1 357 429 -5641 2077 277 85 59 chr4 137150757 137151958 -65176389 + L1ME LINE L1 116 1435 -4826 5304 139 18 8 chr4 137151958 137153053 -65175294 + L1PA15 LINE L1 5063 6165 0 2077 277 85 59 chr4 137153053 137153625 -65174722 + L1ME LINE L1 1435 1990 -4271 762 165 47 0 chr4 137153635 137153762 -65174585 + FLAM_A SINE Alu 1 133 0 2184 120 0 0 chr4 137153769 137154069 -65174278 + AluSg SINE Alu 1 300 -10 525 222 75 11 chr4 137155561 137155724 -65172623 - MER20B DNA MER1_type -4 215 38 412 141 0 0 chr4 137157076 137157140 -65171207 - MER92C LTR ERV1 0 554 491 335 244 72 92 chr4 137157168 137157405 -65170942 - MER92B LTR ERV1 -336 218 1 200 156 0 44 chr4 137157769 137157814 -65170533 + A-rich Low_complexity Low_complexity 4 46 0 853 288 43 55 chr4 137157882 137158299 -65170048 + L1MEd LINE L1 332 743 -5376 227 342 26 33 chr4 137158578 137158730 -65169617 + L1M4 LINE L1 4907 5057 -1089 2805 13 0 0 chr4 137158947 137159260 -65169087 - AluYb8 SINE Alu -5 313 1 239 200 0 15 chr4 137159576 137159641 -65168706 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 547 326 18 54 chr4 137159841 137160065 -65168282 + MIR SINE MIR 34 249 -13 1308 281 151 6 chr4 137161787 137162304 -65166043 - L2 LINE L2 -1035 2279 1688 193 372 42 56 chr4 137162455 137162670 -65165677 - L2 LINE L2 -802 2512 2301 22 0 0 0 chr4 137162879 137162901 -65165446 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 137162937 137162965 -65165382 + AT_rich Low_complexity Low_complexity 1 28 0 40 49 0 0 chr4 137163568 137163629 -65164718 + AT_rich Low_complexity Low_complexity 1 61 0 247 250 12 48 chr4 137163849 137163933 -65164414 + L2 LINE L2 2320 2400 -914 270 231 0 0 chr4 137163974 137164026 -65164321 - L2 LINE L2 -4 3309 3258 335 161 26 168 chr4 137164093 137164248 -65164099 - L1ME4a LINE L1 -11 6110 5978 240 196 11 65 chr4 137165035 137165127 -65163220 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 254 279 73 28 chr4 137165281 137165460 -65162887 - L1M4 LINE L1 -797 5349 5163 1043 105 21 0 chr4 137165532 137165675 -65162672 - AluSq/x SINE Alu -167 146 1 12573 207 55 15 chr4 137165709 137171523 -65156824 + L1M1 LINE L1 16 6816 -749 354 157 0 0 chr4 137171527 137171578 -65156769 - MER2 DNA MER2_type -15 330 280 22 35 0 0 chr4 137171578 137171607 -65156740 + AT_rich Low_complexity Low_complexity 1 29 0 796 143 54 0 chr4 137171607 137171754 -65156593 - MER2 DNA MER2_type -135 210 56 1248 297 35 46 chr4 137172190 137172645 -65155702 + LTR16C LTR ERVL 42 491 0 4000 195 40 35 chr4 137173818 137175063 -65153284 - L1MB1 LINE L1 -6 5986 4733 2921 251 54 54 chr4 137175060 137176127 -65152220 - L1MB1 LINE L1 -4811 1080 14 * 21 0 0 0 chr4 137176776 137176797 -65151550 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr4 137177597 137177632 -65150715 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 137177898 137177926 -65150421 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 137177987 137178010 -65150337 + AT_rich Low_complexity Low_complexity 1 23 0 241 237 0 34 chr4 137178222 137178281 -65150066 + L3 LINE CR1 692 748 -829 411 265 54 60 chr4 137178823 137178989 -65149358 + L3 LINE CR1 1404 1568 -9 497 256 80 0 chr4 137179943 137180119 -65148228 - L1ME4a LINE L1 0 6121 5932 23 33 0 0 chr4 137180186 137180216 -65148131 + AT_rich Low_complexity Low_complexity 1 30 0 700 224 20 0 chr4 137180282 137180434 -65147913 + Charlie1 DNA MER1_type 59 213 -2548 335 135 0 54 chr4 137180453 137180527 -65147820 + Charlie1 DNA MER1_type 2633 2702 -59 684 214 92 44 chr4 137180531 137180737 -65147610 - L1ME3A LINE L1 -15 6155 5940 301 346 66 7 chr4 137180809 137180945 -65147402 + MIR SINE MIR 23 166 -96 669 169 76 81 chr4 137181027 137181199 -65147148 + MER5A DNA MER1_type 1 171 -18 434 330 93 44 chr4 137181199 137181469 -65146878 - L1ME3A LINE L1 -296 5825 5543 390 217 98 0 chr4 137181972 137182064 -65146283 - MIR SINE MIR -117 145 45 6992 56 8 0 chr4 137182358 137183239 -65145108 + L1PA7 LINE L1 5267 6154 0 557 95 42 0 chr4 137185085 137185180 -65143167 - Tigger6 DNA MER2_type -165 1432 1334 6695 29 5 0 chr4 137185180 137185967 -65142380 + L1PA3 LINE L1 5364 6154 -1 763 184 30 30 chr4 137186002 137186050 -65142297 + Tigger6 DNA MER2_type 1429 1476 -121 2415 88 0 0 chr4 137186050 137186347 -65142000 + AluSg SINE Alu 1 297 -13 763 184 30 30 chr4 137186347 137186466 -65141881 + Tigger6 DNA MER2_type 1475 1596 -1 1690 287 62 19 chr4 137186587 137187573 -65140774 - L1MDa LINE L1 -3036 3346 2362 416 255 151 21 chr4 137188017 137188406 -65139941 - L1MDa LINE L1 -4689 1695 1266 8737 170 33 7 chr4 137188455 137189025 -65139322 - L1PA13 LINE L1 -1 6813 6259 2354 75 13 10 chr4 137189025 137189330 -65139017 + AluY SINE Alu 1 306 -5 8737 170 33 7 chr4 137189330 137191233 -65137114 - L1PA13 LINE L1 -555 6259 4279 788 133 6 0 chr4 137191236 137191388 -65136959 - L1 LINE L1 -1331 4815 4659 * 11447 198 51 10 chr4 137191384 137192783 -65135564 - L1PA13 LINE L1 -2546 4251 2911 2186 70 3 0 chr4 137192783 137193069 -65135278 - L1PA14 LINE L1 -4 6157 5871 11447 198 51 10 chr4 137193069 137195732 -65132615 - L1PA13 LINE L1 -3886 2911 4 334 254 69 86 chr4 137195743 137195958 -65132389 - HAL1 LINE L1 -1332 1175 963 1782 103 26 15 chr4 137195958 137196229 -65132118 - L1PA10 LINE L1 -4 6164 5891 334 254 69 86 chr4 137196229 137196245 -65132102 - HAL1 LINE L1 -1544 963 948 317 256 168 60 chr4 137196802 137197118 -65131229 - L1M4 LINE L1 -3149 2997 2648 27 29 0 0 chr4 137198491 137198525 -65129822 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr4 137198725 137198755 -65129592 + AT_rich Low_complexity Low_complexity 1 30 0 206 269 0 0 chr4 137198912 137198964 -65129383 - MIR3 SINE MIR -42 166 115 509 247 20 0 chr4 137199125 137199271 -65129076 - MER104 DNA Tc2 -3 177 29 237 323 0 0 chr4 137199362 137199427 -65128920 + L1PA13 LINE L1 1194 1258 -5529 23 33 0 0 chr4 137199443 137199473 -65128874 + AT_rich Low_complexity Low_complexity 1 30 0 245 333 91 30 chr4 137199708 137199840 -65128507 + L2 LINE L2 2682 2821 -493 223 321 60 0 chr4 137199984 137200068 -65128279 + L2 LINE L2 2992 3080 -192 481 243 104 14 chr4 137200605 137200749 -65127598 - L2 LINE L2 -2 3311 3155 9594 151 59 44 chr4 137200759 137203348 -65124999 + L1P3 LINE L1 12 2708 -3753 * 44065 39 5 3 chr4 137203343 137209487 -65118860 + L1PA4 LINE L1 1 6155 0 4585 134 5 5 chr4 137209479 137210235 -65118112 + L1P3 LINE L1 2676 3431 -3030 * 7088 98 27 0 chr4 137210335 137211388 -65116959 - L1P LINE L1 -2177 3969 2889 464 306 108 22 chr4 137211846 137212078 -65116269 - MIR SINE MIR -3 259 8 1417 174 91 33 chr4 137212124 137212486 -65115861 + L1M2c LINE L1 2 384 -6405 1669 144 18 11 chr4 137212625 137212909 -65115438 - L1PA16 LINE L1 -1 6165 5880 2638 233 98 56 chr4 137212917 137214593 -65113754 - L1MEc LINE L1 -2667 3548 1827 836 294 78 52 chr4 137214611 137214892 -65113455 - L1MEc LINE L1 -4671 1725 1453 2022 138 10 10 chr4 137214892 137214906 -65113441 - AluSx SINE Alu -1 311 298 189 0 0 0 chr4 137214906 137214927 -65113420 + (TG)n Simple_repeat Simple_repeat 2 22 0 2022 138 10 10 chr4 137214927 137215223 -65113124 - AluSx SINE Alu -13 299 1 836 294 78 52 chr4 137215223 137215727 -65112620 - L1MEc LINE L1 -4943 1453 910 5015 74 6 1 chr4 137215727 137216429 -65111918 + L1PA8 LINE L1 5490 6194 0 836 294 78 52 chr4 137216429 137216556 -65111791 - L1MEc LINE L1 -5486 910 788 616 362 22 31 chr4 137216682 137217099 -65111248 - L1MEc LINE L1 -5817 579 167 307 211 13 13 chr4 137217163 137217239 -65111108 - LTR33A LTR ERVL 0 523 448 229 319 44 44 chr4 137217647 137217760 -65110587 + MIR3 SINE MIR 1 113 -95 401 133 22 111 chr4 137217761 137217851 -65110496 - MER77 LTR ERV1 -1 604 523 1867 160 134 28 chr4 137217858 137218245 -65110102 - MSTA LTR MaLR 0 428 1 9155 129 23 41 chr4 137218245 137219847 -65108500 - MSTA-int LTR MaLR 0 1580 3 2018 127 143 8 chr4 137219849 137220226 -65108121 - MSTA LTR MaLR 0 428 1 1692 233 52 58 chr4 137220232 137220735 -65107612 - MER77 LTR ERV1 -94 511 12 243 301 102 48 chr4 137221096 137221222 -65107125 + MER91A DNA MER1_type 20 138 -58 2953 6 0 0 chr4 137221222 137221533 -65106814 - AluYa5 SINE Alu 0 311 1 261 0 0 0 chr4 137221537 137221566 -65106781 + (TTA)n Simple_repeat Simple_repeat 2 30 0 243 301 102 48 chr4 137221566 137221600 -65106747 + MER91A DNA MER1_type 140 194 -2 291 190 0 0 chr4 137225839 137225897 -65102450 + (TA)n Simple_repeat Simple_repeat 2 59 0 229 224 0 0 chr4 137226500 137226549 -65101798 + T-rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr4 137226847 137226872 -65101475 + AT_rich Low_complexity Low_complexity 1 25 0 247 167 0 0 chr4 137227059 137227107 -65101240 - L2 LINE L2 0 3313 3266 2223 107 10 0 chr4 137227749 137228039 -65100308 + AluSp SINE Alu 5 297 -16 294 267 81 64 chr4 137229926 137230098 -65098249 - MIR SINE MIR 0 262 88 234 214 54 0 chr4 137231081 137231137 -65097210 - MIR SINE MIR -105 157 99 26 0 0 0 chr4 137232776 137232802 -65095545 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 137233458 137233480 -65094867 + AT_rich Low_complexity Low_complexity 1 22 0 210 271 232 26 chr4 137233494 137233649 -65094698 + MIR3 SINE MIR 19 205 -3 192 77 0 0 chr4 137233985 137234011 -65094336 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 578 308 55 55 chr4 137234162 137234721 -65093626 - L1MC/D LINE L1 -1988 5820 5262 5236 222 47 47 chr4 137235288 137235506 -65092841 - L1 LINE L1 -2603 4245 4028 2204 129 10 0 chr4 137235506 137235809 -65092538 - AluSx SINE Alu -6 306 1 5236 222 47 47 chr4 137235809 137238217 -65090130 - L1 LINE L1 -2820 4028 1617 591 299 36 5 chr4 137241808 137242002 -65086345 + MIR SINE MIR 59 258 -4 216 0 0 0 chr4 137242084 137242108 -65086239 + (TG)n Simple_repeat Simple_repeat 2 25 0 292 223 15 115 chr4 137242403 137242499 -65085848 - MIR SINE MIR -49 213 132 1499 184 56 14 chr4 137242499 137242787 -65085560 - AluJo SINE Alu -12 300 1 292 223 15 115 chr4 137242787 137242820 -65085527 - MIR SINE MIR -130 132 97 343 208 105 26 chr4 137243510 137243626 -65084721 - MIR SINE MIR -61 147 35 281 225 12 38 chr4 137244033 137244113 -65084234 - MIR SINE MIR -90 172 95 594 233 49 25 chr4 137244511 137244674 -65083673 - MIR SINE MIR -52 210 44 220 307 0 57 chr4 137245900 137245988 -65082359 + MIR SINE MIR 66 148 -60 235 352 102 0 chr4 137247177 137247285 -65081062 - L2 LINE L2 -38 3234 3116 23 0 0 0 chr4 137247691 137247714 -65080633 + AT_rich Low_complexity Low_complexity 1 23 0 608 231 89 12 chr4 137248705 137248874 -65079473 + MIR SINE MIR 81 262 0 232 226 75 0 chr4 137249147 137249200 -65079147 + MIR SINE MIR 108 164 -98 2088 132 0 0 chr4 137249279 137249574 -65078773 + AluSx SINE Alu 1 295 -17 567 229 159 6 chr4 137249624 137249781 -65078566 - MER5A DNA MER1_type 0 189 9 244 352 74 19 chr4 137250805 137250967 -65077380 - L3b LINE CR1 -68 1515 1345 211 341 23 0 chr4 137252773 137252861 -65075486 + G-rich Low_complexity Low_complexity 6 95 0 180 290 14 14 chr4 137253361 137253430 -65074917 - MIR SINE MIR -110 152 84 215 274 124 0 chr4 137253907 137254006 -65074341 + MIR SINE MIR 37 147 -68 277 256 212 15 chr4 137254561 137254698 -65073649 + MIR3 SINE MIR 20 183 -25 702 61 8 53 chr4 137254944 137255076 -65073271 + (CA)n Simple_repeat Simple_repeat 2 127 0 3101 157 9 28 chr4 137257356 137257929 -65070418 - L1MA6 LINE L1 -6 6294 5733 2291 23 0 4 chr4 137258178 137258437 -65069910 + AluY SINE Alu 50 307 -4 355 244 31 44 chr4 137258548 137258566 -65069781 - L1MA10 LINE L1 -1 6333 6316 1141 231 103 15 chr4 137258566 137259246 -65069101 - L1ME2 LINE L1 -9 6155 5292 231 180 0 0 chr4 137259265 137259315 -65069032 - L1ME2 LINE L1 -974 5172 5123 1195 164 0 30 chr4 137259328 137259529 -65068818 - AluJb SINE Alu -6 306 112 5530 157 15 8 chr4 137259529 137260419 -65067928 - ERVL-B1 LTR ERVL -1319 4445 3550 11703 198 19 4 chr4 137260422 137262551 -65065796 - ERVL-B1 LTR ERVL -2866 2898 738 2621 234 49 15 chr4 137262571 137263186 -65065161 - ERVL-B1 LTR ERVL -5127 637 2 1926 217 72 36 chr4 137263187 137263226 -65065121 - MLT2B1 LTR ERVL 0 520 484 375 23 0 0 chr4 137263226 137263270 -65065077 + (TG)n Simple_repeat Simple_repeat 2 45 0 1926 217 72 36 chr4 137263270 137263732 -65064615 - MLT2B1 LTR ERVL -36 484 1 442 189 182 8 chr4 137264202 137264334 -65064013 + L2 LINE L2 1907 2061 -1253 852 315 18 7 chr4 137264461 137264734 -65063613 + LTR16C LTR ERVL 186 461 -30 750 239 99 35 chr4 137264756 137265040 -65063307 + L2 LINE L2 2113 2414 -900 438 364 9 5 chr4 137265041 137265258 -65063089 - L2 LINE L2 -400 2914 2697 24 77 0 0 chr4 137265633 137265685 -65062662 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr4 137266007 137266030 -65062317 + AT_rich Low_complexity Low_complexity 1 23 0 201 286 0 16 chr4 137266432 137266495 -65061852 + CT-rich Low_complexity Low_complexity 4 65 0 273 259 49 74 chr4 137268141 137268303 -65060044 - MIR SINE MIR -59 203 46 1713 168 0 31 chr4 137269544 137269865 -65058482 - AluJb SINE Alu -1 311 1 210 200 22 0 chr4 137271295 137271340 -65057007 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 259 159 48 32 chr4 137272430 137272493 -65055854 - MIR3 SINE MIR -20 188 125 1287 176 149 11 chr4 137272933 137273195 -65055152 + AluSx SINE Alu 5 302 0 2522 73 0 3 chr4 137273722 137274025 -65054322 - AluY SINE Alu -9 302 1 285 259 0 0 chr4 137274492 137274573 -65053774 + A-rich Low_complexity Low_complexity 1 81 0 229 239 239 0 chr4 137274846 137274913 -65053434 + MER91A DNA MER1_type 28 110 -86 245 247 123 0 chr4 137275642 137275715 -65052632 + MER117 DNA MER1_type 40 121 -76 1338 213 33 0 chr4 137275831 137276103 -65052244 - MER58B DNA MER1_type -4 337 57 366 299 50 40 chr4 137276942 137277143 -65051204 - MIR SINE MIR -31 231 29 902 207 0 0 chr4 137278855 137279019 -65049328 + FRAM SINE Alu 1 164 -2 195 333 0 0 chr4 137281076 137281139 -65047208 + L3 LINE CR1 1140 1202 -375 297 147 0 93 chr4 137281237 137281312 -65047035 + Tigger2 DNA MER2_type 18 85 -2633 23 0 0 0 chr4 137281355 137281378 -65046969 + AT_rich Low_complexity Low_complexity 1 23 0 313 314 0 10 chr4 137281958 137282060 -65046287 + MIR SINE MIR 2 102 -160 189 0 0 0 chr4 137282101 137282122 -65046225 + (T)n Simple_repeat Simple_repeat 1 21 0 210 255 0 0 chr4 137283034 137283081 -65045266 - L2 LINE L2 -13 3300 3254 2117 128 0 3 chr4 137283203 137283509 -65044838 + AluSc SINE Alu 5 309 0 35 0 0 22 chr4 137283617 137283630 -65044717 + AT_rich Low_complexity Low_complexity 1 13 -32 6972 35 0 0 chr4 137283630 137284440 -65043907 + L1PA5 LINE L1 5339 6148 -6 35 0 0 22 chr4 137284440 137284472 -65043875 + AT_rich Low_complexity Low_complexity 13 45 0 21 71 0 0 chr4 137284637 137284679 -65043668 + AT_rich Low_complexity Low_complexity 1 42 0 1212 157 0 48 chr4 137284884 137285118 -65043229 - AluJb SINE Alu 0 306 83 240 184 0 0 chr4 137285668 137285717 -65042630 + CT-rich Low_complexity Low_complexity 1 49 0 614 195 25 3 chr4 137286036 137286188 -65042159 + MLT1A2 LTR MaLR 232 372 -2 473 244 96 13 chr4 137286190 137286346 -65042001 + MIR SINE MIR 77 245 -17 317 298 74 50 chr4 137287898 137288140 -65040207 - MIR SINE MIR 0 262 15 * 355 359 36 9 chr4 137288111 137288331 -65040016 + L2 LINE L2 2640 2865 -449 866 246 24 5 chr4 137288359 137288570 -65039777 - MIR SINE MIR -12 250 36 2372 189 17 7 chr4 137288747 137289166 -65039181 - MSTB LTR MaLR -2 424 2 9385 177 17 2 chr4 137289167 137290792 -65037555 - MSTB-int LTR MaLR 0 1651 2 2233 179 39 15 chr4 137290794 137291155 -65037192 - MSTB LTR MaLR -2 424 50 2179 138 0 6 chr4 137291155 137291467 -65036880 - AluSg SINE Alu 0 310 1 2233 179 39 15 chr4 137291467 137291514 -65036833 - MSTB LTR MaLR -376 50 6 2876 254 124 41 chr4 137291650 137292640 -65035707 + L2 LINE L2 1681 2841 -472 2290 117 3 0 chr4 137292640 137292949 -65035398 + AluSx SINE Alu 1 310 -2 2876 254 124 41 chr4 137292949 137293465 -65034882 + L2 LINE L2 2841 3313 0 245 246 0 16 chr4 137294180 137294241 -65034106 - L2 LINE L2 -8 3264 3205 1607 145 46 0 chr4 137294307 137294548 -65033799 + AluSx SINE Alu 1 252 -60 505 216 20 0 chr4 137294646 137294748 -65033599 + MLT1E LTR MaLR 490 593 0 913 261 91 27 chr4 137295069 137295442 -65032905 + L1MC4a LINE L1 5709 5831 -335 1915 132 84 0 chr4 137295839 137296150 -65032197 + MLT1B LTR MaLR 2 338 -52 389 149 53 43 chr4 137296152 137296246 -65032101 - Alu SINE Alu 0 300 235 362 180 0 0 chr4 137296396 137296457 -65031890 - MLT1C LTR MaLR 0 467 407 2246 93 3 7 chr4 137296461 137296762 -65031585 + AluSx SINE Alu 1 300 -12 207 312 28 37 chr4 137297484 137297593 -65030754 + MIR SINE MIR 34 141 -67 507 238 125 6 chr4 137297666 137297834 -65030513 + MIR SINE MIR 64 251 -11 207 139 0 0 chr4 137297840 137297876 -65030471 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2289 89 26 0 chr4 137297905 137298208 -65030139 + AluY SINE Alu 1 311 0 1608 189 48 33 chr4 137298223 137298642 -65029705 - MER69 DNA AcHobo 0 2526 2102 2027 117 4 11 chr4 137298648 137298929 -65029418 + AluSg SINE Alu 1 279 -31 186 43 0 0 chr4 137298935 137298958 -65029389 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 816 216 12 12 chr4 137298996 137299158 -65029189 + FRAM SINE Alu 1 162 -14 1360 197 123 11 chr4 137299158 137299533 -65028814 - MER69 DNA AcHobo -451 2075 1659 1460 234 96 18 chr4 137299570 137299954 -65028393 - MER69 DNA AcHobo -532 694 281 1871 119 35 48 chr4 137299954 137300264 -65028083 + AluSq SINE Alu 1 306 -7 687 25 0 0 chr4 137300277 137300358 -65027989 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 1065 267 98 0 chr4 137300361 137300627 -65027720 - MER69 DNA AcHobo -2234 292 1 456 328 71 5 chr4 137301872 137302070 -65026277 + MIR SINE MIR 34 244 -18 384 341 80 50 chr4 137303181 137303979 -65024368 - L2 LINE L2 -52 3220 2380 382 327 82 6 chr4 137304818 137304977 -65023370 + L2 LINE L2 3102 3272 0 229 311 14 0 chr4 137305633 137305707 -65022640 + MIR SINE MIR 44 118 -90 21 0 0 0 chr4 137307376 137307397 -65020950 + AT_rich Low_complexity Low_complexity 1 21 0 807 276 33 19 chr4 137307593 137307853 -65020494 - MIR SINE MIR 0 262 1 467 249 54 97 chr4 137308329 137308464 -65019883 + MER5B DNA MER1_type 2 128 -50 2160 129 0 7 chr4 137308464 137308774 -65019573 + AluSx SINE Alu 1 308 -4 467 249 54 97 chr4 137308774 137308823 -65019524 + MER5B DNA MER1_type 128 178 0 2324 116 7 0 chr4 137309229 137309539 -65018808 + AluSx SINE Alu 1 312 0 822 279 55 50 chr4 137309636 137310052 -65018295 + L2 LINE L2 2894 3311 -2 309 68 0 0 chr4 137311149 137311193 -65017154 + (CA)n Simple_repeat Simple_repeat 2 45 0 293 187 13 0 chr4 137311514 137311589 -65016758 + GA-rich Low_complexity Low_complexity 2 77 0 201 286 0 0 chr4 137311721 137311770 -65016577 + (CG)n Simple_repeat Simple_repeat 2 50 0 2272 125 37 3 chr4 137311931 137312283 -65016064 - THE1B LTR MaLR 0 364 1 8350 152 66 21 chr4 137316152 137316584 -65011763 - L1MA6 LINE L1 -7 6293 5882 1930 131 37 55 chr4 137316584 137316966 -65011381 + THE1C LTR MaLR 1 375 0 8350 152 66 21 chr4 137316966 137318193 -65010154 - L1MA6 LINE L1 -418 5882 4475 2477 78 0 3 chr4 137318193 137318500 -65009847 + AluY SINE Alu 1 306 -5 8350 152 66 21 chr4 137318500 137319306 -65009041 - L1MA6 LINE L1 -1825 4475 3707 873 177 25 17 chr4 137319314 137319551 -65008796 + L1ME2 LINE L1 4165 4403 -1743 * 1946 227 65 38 chr4 137319534 137320839 -65007508 + L1ME2 LINE L1 4744 6124 -40 184 250 0 0 chr4 137320969 137321001 -65007346 - L2 LINE L2 -15 3257 3226 1768 170 0 24 chr4 137321033 137321322 -65007025 - AluJo SINE Alu -30 282 1 526 290 57 17 chr4 137321362 137321538 -65006809 - MIR SINE MIR -70 192 10 744 221 47 11 chr4 137321706 137321896 -65006451 - MIR SINE MIR 0 262 66 255 103 0 0 chr4 137323899 137323938 -65004409 + (TC)n Simple_repeat Simple_repeat 2 40 0 535 197 212 8 chr4 137324262 137324394 -65003953 - MLT1D LTR MaLR 0 505 347 21 0 0 0 chr4 137324838 137324859 -65003488 + AT_rich Low_complexity Low_complexity 1 21 0 515 216 79 53 chr4 137325152 137325342 -65003005 - L2 LINE L2 -4 3309 3115 651 156 1 35 chr4 137325344 137326053 -65002294 + (TA)n Simple_repeat Simple_repeat 1 685 0 2115 282 93 7 chr4 137326054 137326899 -65001448 - L2 LINE L2 -134 3179 2272 399 206 59 81 chr4 137327207 137327343 -65001004 + MIR SINE MIR 97 229 -33 22 0 0 0 chr4 137329005 137329027 -64999320 + AT_rich Low_complexity Low_complexity 1 22 0 234 284 25 25 chr4 137329151 137329232 -64999115 - MER91B DNA MER1_type -47 143 63 205 149 21 21 chr4 137330212 137330259 -64998088 + T-rich Low_complexity Low_complexity 4 50 0 1380 54 0 27 chr4 137330260 137330444 -64997903 - L1PA5 LINE L1 0 6154 5976 312 272 88 40 chr4 137330474 137330599 -64997748 + L2 LINE L2 3137 3267 -5 1313 111 84 0 chr4 137332615 137332840 -64995507 - Tigger3(Golem) DNA MER2_type -599 2430 2187 2015 149 21 15 chr4 137334254 137334589 -64993758 - MER1B DNA MER1_type 0 337 1 246 32 0 0 chr4 137334630 137334661 -64993686 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 974 299 71 32 chr4 137334902 137335535 -64992812 + L1MC4a LINE L1 5257 5914 -1894 216 246 14 14 chr4 137335555 137335624 -64992723 + (TA)n Simple_repeat Simple_repeat 2 70 0 222 226 0 0 chr4 137336412 137336465 -64991882 + T-rich Low_complexity Low_complexity 1 53 0 32 75 0 0 chr4 137336622 137336689 -64991658 + AT_rich Low_complexity Low_complexity 1 67 0 226 381 63 8 chr4 137337470 137337596 -64990751 - MIR SINE MIR -65 197 65 776 298 59 38 chr4 137338952 137339375 -64988972 - MLT1H LTR MaLR -46 503 72 227 236 45 22 chr4 137339416 137339505 -64988842 - MLT1H-int LTR MaLR -29 1342 1252 272 260 173 74 chr4 137340867 137341098 -64987249 - L2 LINE L2 0 3313 3060 2964 139 54 23 chr4 137341442 137342001 -64986346 + L1PB4 LINE L1 5581 6156 0 2424 86 0 0 chr4 137344321 137344623 -64983724 + AluY SINE Alu 1 302 -9 1476 68 0 0 chr4 137344901 137345078 -64983269 + AluY SINE Alu 6 182 -129 550 245 49 0 chr4 137345554 137345697 -64982650 + L1PBa LINE L1 48 197 -6666 * 14361 215 18 11 chr4 137345695 137348116 -64980231 + L1PBa LINE L1 1396 3922 -2940 201 74 0 0 chr4 137348116 137348143 -64980204 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 14361 215 18 11 chr4 137348143 137350338 -64978009 + L1PBa LINE L1 3922 6100 -762 2236 86 3 3 chr4 137350342 137350656 -64977691 + L1PB1 LINE L1 5339 5652 -499 2386 114 11 3 chr4 137350669 137351030 -64977317 + L1PB1 LINE L1 5783 6146 -5 25 31 0 0 chr4 137351031 137351063 -64977284 + AT_rich Low_complexity Low_complexity 1 32 0 2013 145 0 3 chr4 137351070 137351367 -64976980 + AluSx SINE Alu 2 297 -15 22 35 0 0 chr4 137352140 137352169 -64976178 + AT_rich Low_complexity Low_complexity 1 29 0 297 309 141 27 chr4 137352197 137352602 -64975745 - L1ME LINE L1 -362 5800 5350 306 299 87 0 chr4 137352789 137352916 -64975431 - L1ME LINE L1 -1127 5019 4882 896 285 9 0 chr4 137353225 137353446 -64974901 + MER58A DNA MER1_type 2 224 0 1090 286 88 19 chr4 137353561 137354233 -64974114 + L1M4 LINE L1 2267 2984 -3162 516 244 23 8 chr4 137354224 137354355 -64973992 + L1MDa LINE L1 18 150 -6390 * 577 252 52 81 chr4 137354371 137354752 -64973595 + L1M4 LINE L1 4964 5333 -813 2721 256 169 19 chr4 137354753 137355653 -64972694 + L1M3c LINE L1 11 1045 -5096 2479 246 40 9 chr4 137355678 137356486 -64971861 + L1MDa LINE L1 1222 2369 -4172 6468 219 53 59 chr4 137356489 137358077 -64970270 + L1M2a LINE L1 2 1580 -5588 1575 183 20 48 chr4 137358257 137358717 -64969630 - L1PBa LINE L1 -5021 1842 1396 550 245 49 0 chr4 137358715 137358858 -64969489 - L1PBa LINE L1 -6666 197 48 * 1585 208 4 0 chr4 137360252 137360531 -64967816 - AluJo SINE Alu -30 282 3 828 191 14 43 chr4 137361056 137361265 -64967082 - MER3 DNA MER1_type -6 203 1 359 309 104 55 chr4 137361495 137361802 -64966545 + L2 LINE L2 2988 3309 -4 26 0 0 0 chr4 137362508 137362534 -64965813 + AT_rich Low_complexity Low_complexity 1 26 0 303 231 77 0 chr4 137363082 137363160 -64965187 - L2 LINE L2 -1 3312 3229 23 0 0 0 chr4 137363900 137363923 -64964424 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr4 137364054 137364086 -64964261 + AT_rich Low_complexity Low_complexity 1 32 0 1989 149 131 11 chr4 137364301 137364683 -64963664 - MSTA LTR MaLR 0 428 1 8606 156 13 35 chr4 137364684 137366296 -64962051 - MSTA-int LTR MaLR -1 1579 3 2092 119 132 26 chr4 137366298 137366393 -64961954 - MSTA LTR MaLR 0 428 344 4684 60 9 0 chr4 137366393 137366975 -64961372 + LTR14C LTR ERVK 1 587 0 2092 119 132 26 chr4 137366975 137367266 -64961081 - MSTA LTR MaLR -84 344 1 2171 116 16 0 chr4 137368432 137368735 -64959612 + AluSx SINE Alu 3 310 -2 368 262 43 43 chr4 137368796 137369029 -64959318 + L1MDa LINE L1 3039 3271 -3269 809 182 23 68 chr4 137369029 137369205 -64959142 + FRAM SINE Alu 1 165 -11 1177 283 81 18 chr4 137369211 137370028 -64958319 + L1MDa LINE L1 3292 4866 -1674 6308 92 18 2 chr4 137370032 137371549 -64956798 + L1PA13 LINE L1 4628 6163 0 205 216 0 0 chr4 137371824 137371861 -64956486 + (TA)n Simple_repeat Simple_repeat 2 38 0 470 209 0 12 chr4 137371964 137372050 -64956297 + MIR SINE MIR 9 93 -169 755 266 94 39 chr4 137372392 137372776 -64955571 + L1MDa LINE L1 361 765 -5956 * 996 220 8 4 chr4 137372765 137373006 -64955341 + L1MDa LINE L1 3848 4089 -2451 1400 185 11 35 chr4 137373010 137373296 -64955051 + AluJo SINE Alu 34 312 0 1950 150 20 3 chr4 137373321 137373615 -64954732 + AluJb SINE Alu 1 299 -13 2449 231 33 8 chr4 137373627 137374207 -64954140 + L1MDa LINE L1 4124 4729 -1811 6874 69 0 7 chr4 137374207 137375537 -64952810 + L1PA7 LINE L1 4834 6154 0 2449 231 33 8 chr4 137375537 137375713 -64952634 + L1MDa LINE L1 4729 4899 -1641 1730 195 92 0 chr4 137375734 137376170 -64952177 + L1MDa LINE L1 5124 5599 -941 787 276 49 16 chr4 137377179 137377422 -64950925 - MIR SINE MIR -10 252 2 365 229 42 21 chr4 137377978 137378074 -64950273 - MIR SINE MIR -2 260 163 211 256 124 83 chr4 137378131 137378252 -64950095 + L2 LINE L2 3185 3310 -3 213 65 0 0 chr4 137379305 137379336 -64949011 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 204 318 45 11 chr4 137380848 137380936 -64947411 + L2 LINE L2 3222 3312 -1 370 281 0 0 chr4 137381219 137381301 -64947046 - MIR SINE MIR -171 91 10 2432 49 3 0 chr4 137382434 137382719 -64945628 - AluSc SINE Alu -23 286 1 1592 261 97 9 chr4 137382964 137383622 -64944725 - L1MC4a LINE L1 -776 5370 5171 26 30 0 0 chr4 137383651 137383684 -64944663 + AT_rich Low_complexity Low_complexity 1 33 0 2205 112 3 0 chr4 137383684 137383996 -64944351 - L1PA16 LINE L1 -10 6156 5844 1772 173 69 42 chr4 137384094 137384527 -64943820 - MER41B LTR ERV1 -29 606 162 245 352 0 14 chr4 137384811 137384882 -64943465 + L2 LINE L2 3199 3268 -4 1435 96 64 14 chr4 137385747 137385966 -64942381 - MER30 DNA MER1_type 0 230 1 219 254 333 0 chr4 137387095 137387233 -64941114 + MIR SINE MIR 75 258 -4 3283 159 11 3 chr4 137387634 137388458 -64939889 + L1MB7 LINE L1 5027 5854 -324 1747 172 12 9 chr4 137388530 137388867 -64939480 + L1MB7 LINE L1 5836 6173 -11 5507 220 78 36 chr4 137388947 137389007 -64939340 + L1ME2 LINE L1 3332 3388 -2776 1671 206 10 3 chr4 137389007 137389303 -64939044 - AluJo SINE Alu -14 298 1 5507 220 78 36 chr4 137389303 137389560 -64938787 + L1ME2 LINE L1 3388 3633 -2531 2690 39 0 0 chr4 137389560 137389868 -64938479 + AluY SINE Alu 1 308 -3 5507 220 78 36 chr4 137389868 137389881 -64938466 + L1ME2 LINE L1 3633 3644 -2520 2582 101 3 16 chr4 137389881 137390249 -64938098 + THE1B LTR MaLR 1 363 -1 5507 220 78 36 chr4 137390249 137390367 -64937980 + L1ME2 LINE L1 3644 3756 -2408 1669 171 43 54 chr4 137390367 137390759 -64937588 - MLT1B LTR MaLR -1 389 2 5507 220 78 36 chr4 137390759 137392222 -64936125 + L1ME2 LINE L1 3756 5157 -1007 1766 138 23 26 chr4 137392222 137392526 -64935821 + L1PA16 LINE L1 5855 6157 -9 5507 220 78 36 chr4 137392526 137392654 -64935693 + L1ME2 LINE L1 5157 5278 -886 1959 146 21 0 chr4 137392654 137392942 -64935405 + AluSx SINE Alu 3 296 -16 5507 220 78 36 chr4 137392942 137393589 -64934758 + L1ME2 LINE L1 5278 6151 -13 980 241 90 41 chr4 137393646 137394124 -64934223 + MLT1E2 LTR MaLR 131 622 -4 599 87 0 0 chr4 137394280 137394372 -64933975 + L1MA9 LINE L1 6216 6307 -5 309 275 0 44 chr4 137394401 137394492 -64933855 - MER5B DNA MER1_type -91 87 1 1989 137 30 10 chr4 137394565 137394864 -64933483 - AluSx SINE Alu -7 305 1 1881 98 0 4 chr4 137395074 137395320 -64933027 + AluSx SINE Alu 59 303 -9 1164 97 10 46 chr4 137395320 137395515 -64932832 + THE1B LTR MaLR 177 364 0 3761 175 35 71 chr4 137395520 137397125 -64931222 + THE1B-int LTR MaLR 6 1445 -135 5058 96 1 0 chr4 137395869 137396575 -64931772 - THE1-int LTR MaLR -505 1075 369 265 283 257 13 chr4 137398325 137398477 -64929870 - MER5A DNA MER1_type 0 189 1 406 289 74 7 chr4 137399048 137399183 -64929164 + MIR3 SINE MIR 11 154 -54 26925 30 1 0 chr4 137399856 137404035 -64924312 + L1PA4 LINE L1 1973 6154 -1 4097 144 30 10 chr4 137404029 137404860 -64923487 + L1 LINE L1 3562 4409 -1737 * 372 281 183 13 chr4 137404992 137405145 -64923202 + L2 LINE L2 2317 2495 -819 1092 288 137 18 chr4 137405151 137405700 -64922647 + L2 LINE L2 2707 3313 0 301 333 43 26 chr4 137406131 137406248 -64922099 + L2 LINE L2 3173 3291 -22 425 149 0 14 chr4 137406424 137406498 -64921849 + MLT1K LTR MaLR 176 248 -340 238 200 169 0 chr4 137407084 137407149 -64921198 + MER33 DNA MER1_type 1 76 -248 32 0 0 0 chr4 137409233 137409265 -64919082 + GC_rich Low_complexity Low_complexity 1 32 0 381 163 11 0 chr4 137409607 137409699 -64918648 - L1MEc LINE L1 -3824 2602 2510 * 412 247 204 21 chr4 137409691 137410007 -64918340 - L1MEc LINE L1 -4598 1926 1669 369 0 0 0 chr4 137410007 137410048 -64918299 + (TG)n Simple_repeat Simple_repeat 2 42 0 412 247 204 21 chr4 137410048 137410344 -64918003 - L1MEc LINE L1 -4855 1669 1078 * 1668 201 10 33 chr4 137410336 137410730 -64917617 - L1M4 LINE L1 -995 5151 4767 1983 151 10 0 chr4 137410843 137411148 -64917199 - AluJo SINE Alu -4 308 1 362 153 17 0 chr4 137411640 137411699 -64916648 + AluJ/FLAM SINE Alu 1 60 -242 1237 202 16 8 chr4 137411849 137412101 -64916246 + MLT1E3 LTR MaLR 371 624 0 2374 37 0 0 chr4 137412343 137412612 -64915735 - AluY SINE Alu -7 304 36 2207 108 0 0 chr4 137412623 137412909 -64915438 - AluSg SINE Alu -24 286 1 1058 145 26 0 chr4 137412909 137413102 -64915245 - Tigger2 DNA MER2_type -2520 198 1 388 140 187 47 chr4 137413193 137413300 -64915047 + MER21B LTR ERV1 329 450 -413 425 186 29 20 chr4 137413438 137413540 -64914807 + L1M2 LINE L1 466 568 -6921 1414 162 37 57 chr4 137413839 137414136 -64914211 - AluJo SINE Alu -21 291 1 1282 258 26 5 chr4 137414176 137414599 -64913748 + L1M3e LINE L1 2007 2438 -5127 * 2346 224 35 11 chr4 137414593 137415371 -64912976 + L1M2 LINE L1 720 1598 -5968 1491 153 179 50 chr4 137416302 137416340 -64912007 - MSTA LTR MaLR 0 428 396 1820 122 87 3 chr4 137416340 137416628 -64911719 + AluSx SINE Alu 1 312 0 1491 153 179 50 chr4 137416628 137416968 -64911379 - MSTA LTR MaLR -32 396 1 286 339 55 12 chr4 137417771 137417936 -64910411 - L3 LINE CR1 -340 1237 1066 531 188 27 27 chr4 137418071 137418220 -64910127 - L1MEc LINE L1 -5915 692 544 366 292 71 32 chr4 137418223 137418377 -64909970 - MIR SINE MIR -6 256 97 27 0 0 0 chr4 137418447 137418474 -64909873 + AT_rich Low_complexity Low_complexity 1 27 0 369 254 18 0 chr4 137419167 137419277 -64909070 - L1ME3 LINE L1 -3 6159 6048 379 218 53 27 chr4 137419350 137419473 -64908874 - MER5A DNA MER1_type 0 189 1 22 0 0 0 chr4 137419545 137419567 -64908780 + AT_rich Low_complexity Low_complexity 1 22 0 499 185 0 19 chr4 137419576 137419684 -64908663 - U6 snRNA snRNA -1 106 1 272 113 0 19 chr4 137420126 137420179 -64908168 + L1ME4a LINE L1 6068 6119 -2 2145 118 10 0 chr4 137420296 137420585 -64907762 - AluSx SINE Alu -20 292 1 647 241 96 0 chr4 137421367 137421533 -64906814 + MIR SINE MIR 74 255 -7 1929 140 3 3 chr4 137421737 137422030 -64906317 + AluJb SINE Alu 10 302 -10 334 352 21 52 chr4 137422123 137422316 -64906031 + L2 LINE L2 2895 3081 -191 332 193 223 18 chr4 137422457 137422628 -64905719 + L2 LINE L2 3106 3312 -1 2228 129 0 0 chr4 137422856 137423165 -64905182 - AluSx SINE Alu -3 309 1 1098 108 59 0 chr4 137423808 137424011 -64904336 + MER33 DNA MER1_type 146 360 -3 594 246 89 65 chr4 137424153 137424401 -64903946 + L2 LINE L2 1118 1371 -1943 350 277 36 18 chr4 137424441 137424553 -64903794 - L1MC4 LINE L1 -9 8033 7920 336 247 0 0 chr4 137424666 137424755 -64903592 + L1MC5 LINE L1 7696 7784 -177 606 346 99 17 chr4 137424757 137425393 -64902954 + L1MC4 LINE L1 7220 7907 -135 307 265 83 23 chr4 137425567 137425699 -64902648 + L2 LINE L2 3170 3309 -4 2043 103 0 10 chr4 137426075 137426366 -64901981 + AluSg SINE Alu 1 288 -22 1652 108 21 0 chr4 137427081 137427322 -64901025 - AluSx SINE Alu -1 311 66 316 215 28 8 chr4 137428377 137428480 -64899867 - MER58A DNA MER1_type -38 186 1 364 307 40 0 chr4 137428496 137428597 -64899750 - L2 LINE L2 -628 2686 2582 630 246 95 0 chr4 137428605 137428784 -64899563 - L2 LINE L2 -1135 2179 1984 4728 168 42 28 chr4 137428785 137429757 -64898590 + L1MA9 LINE L1 5289 6274 -38 983 217 92 15 chr4 137429773 137430045 -64898302 - L2 LINE L2 -1317 1997 1705 303 173 87 106 chr4 137430080 137430184 -64898163 - L2 LINE L2 -70 3243 3142 * 420 341 109 25 chr4 137430175 137430571 -64897776 + L2 LINE L2 2282 2710 -604 341 239 231 23 chr4 137431447 137431577 -64896770 - MER5B DNA MER1_type 0 178 22 514 195 103 35 chr4 137431781 137431955 -64896392 - MLT1F LTR MaLR -13 529 344 229 224 53 13 chr4 137432072 137432148 -64896199 - MLT1F LTR MaLR -365 225 147 6501 121 21 3 chr4 137432376 137433422 -64894925 - L1P LINE L1 -3483 2663 1599 239 224 0 17 chr4 137433549 137433607 -64894740 - AluSx SINE Alu -235 67 11 210 114 45 0 chr4 137433666 137433710 -64894637 + T-rich Low_complexity Low_complexity 6 51 0 1345 154 30 26 chr4 137433741 137434008 -64894339 + AluJb SINE Alu 1 268 -44 743 201 30 18 chr4 137434850 137435019 -64893328 - MIR SINE MIR 0 262 92 719 294 152 21 chr4 137435020 137435401 -64892946 + MLT1H1 LTR MaLR 125 555 0 2175 95 0 0 chr4 137435501 137435795 -64892552 + AluSx SINE Alu 7 300 -12 537 158 168 0 chr4 137436062 137436163 -64892184 - FRAM SINE Alu -30 146 29 1430 159 0 0 chr4 137436174 137436401 -64891946 + AluSg/x SINE Alu 75 301 -11 1605 164 7 27 chr4 137436414 137436712 -64891635 + AluJb SINE Alu 1 292 -20 1225 207 104 17 chr4 137436765 137437064 -64891283 - MLT1A1 LTR MaLR -40 325 1 1518 149 20 17 chr4 137437210 137437505 -64890842 - L1MA7 LINE L1 -216 6075 5780 969 57 0 0 chr4 137437528 137437651 -64890696 - L1PA5 LINE L1 0 6154 6032 327 242 125 17 chr4 137437672 137437792 -64890555 - HAL1 LINE L1 -762 1745 1613 1019 261 49 18 chr4 137437820 137438207 -64890140 - L1ME3 LINE L1 -7 6155 5757 225 236 18 0 chr4 137438508 137438563 -64889784 - L1MC5 LINE L1 -68 7893 7838 386 213 136 47 chr4 137438641 137438876 -64889471 - L1MC5 LINE L1 -170 7791 7536 1748 132 92 0 chr4 137438887 137439168 -64889179 - AluSx SINE Alu -1 311 5 1117 176 5 0 chr4 137439171 137439359 -64888988 - L1ME3 LINE L1 -517 5661 5473 695 195 30 91 chr4 137439347 137439645 -64888702 - L1MC5 LINE L1 -421 7540 7261 * 290 254 71 24 chr4 137439705 137439831 -64888516 - L1ME3 LINE L1 -2364 5444 5313 936 176 6 0 chr4 137440110 137440275 -64888072 + AluJb SINE Alu 138 303 -9 1110 162 14 5 chr4 137441323 137441533 -64886814 - AluSg/x SINE Alu 0 310 99 514 193 18 44 chr4 137441689 137441803 -64886544 - FLAM_C SINE Alu -31 112 2 831 201 104 107 chr4 137441805 137442158 -64886189 - L1ME1 LINE L1 -33 6133 5780 879 154 0 0 chr4 137442158 137442288 -64886059 - FLAM_C SINE Alu -3 130 1 831 201 104 107 chr4 137442288 137442317 -64886030 - L1ME1 LINE L1 -386 5780 5752 3263 189 19 60 chr4 137442319 137443189 -64885158 - LTR5 LTR ERVK -3 966 132 189 0 0 0 chr4 137443556 137443577 -64884770 + (T)n Simple_repeat Simple_repeat 1 21 0 503 173 0 0 chr4 137443586 137443667 -64884680 - AluJ/FLAM SINE Alu -229 83 3 2200 101 0 7 chr4 137443686 137443992 -64884355 + AluSc SINE Alu 1 304 -5 630 168 8 117 chr4 137444070 137444326 -64884021 - AluSg/x SINE Alu -11 299 72 1602 121 8 20 chr4 137444540 137444788 -64883559 - AluJo SINE Alu -67 245 1 2353 72 0 0 chr4 137445062 137445355 -64882992 + AluY SINE Alu 1 293 -18 2402 57 0 3 chr4 137445920 137446216 -64882131 + AluY SINE Alu 4 298 -13 438 230 82 7 chr4 137446217 137446352 -64881995 - MER103 DNA DNA -19 147 3 1999 120 0 10 chr4 137447509 137447808 -64880539 - AluSx SINE Alu -16 296 1 788 283 47 25 chr4 137447827 137448106 -64880241 - L2 LINE L2 -32 3281 2997 183 100 0 0 chr4 137448150 137448180 -64880167 + (A)n Simple_repeat Simple_repeat 1 30 0 1147 231 96 96 chr4 137449279 137449426 -64878921 + MER20B DNA MER1_type 68 214 -569 2083 110 7 0 chr4 137449426 137449718 -64878629 - AluSx SINE Alu -14 298 5 240 35 0 0 chr4 137449719 137449748 -64878599 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1147 231 96 96 chr4 137449748 137450042 -64878305 + MER20B DNA MER1_type 214 514 -269 2011 143 0 3 chr4 137450042 137450349 -64877998 + AluJb SINE Alu 1 306 -6 1147 231 96 96 chr4 137450349 137450446 -64877901 + MER20B DNA MER1_type 513 609 -174 2422 70 0 6 chr4 137450469 137450782 -64877565 - AluY SINE Alu 0 311 1 362 179 124 35 chr4 137450797 137450942 -64877405 + MER20B DNA MER1_type 570 727 -56 598 174 0 0 chr4 137451051 137451143 -64877204 - AluJ/FLAM SINE Alu -219 93 2 425 221 27 81 chr4 137451153 137451174 -64877173 - MIR SINE MIR -89 173 152 1937 119 9 31 chr4 137451174 137451492 -64876855 - AluSx SINE Alu -1 311 1 425 221 27 81 chr4 137451492 137451619 -64876728 - MIR SINE MIR -110 152 33 414 0 0 0 chr4 137451677 137451723 -64876624 + (CA)n Simple_repeat Simple_repeat 2 47 0 300 28 0 0 chr4 137452113 137452149 -64876198 + AluY SINE Alu 1 36 -265 1945 125 0 20 chr4 137452149 137452453 -64875894 + AluSg SINE Alu 8 305 -5 218 237 40 26 chr4 137452454 137452530 -64875817 - L2 LINE L2 -343 2970 2894 1244 142 18 18 chr4 137452548 137452767 -64875580 + AluSq SINE Alu 1 219 -94 1214 197 21 17 chr4 137453444 137453734 -64874613 + AluJb SINE Alu 1 291 -21 1097 194 29 51 chr4 137454098 137454371 -64873976 + AluJb SINE Alu 1 267 -45 21 0 0 0 chr4 137454391 137454412 -64873935 + AT_rich Low_complexity Low_complexity 1 21 0 829 182 0 7 chr4 137454421 137454564 -64873783 - AluSq/x SINE Alu -169 143 2 2124 61 4 0 chr4 137456326 137456587 -64871760 + AluSp SINE Alu 40 301 -12 546 29 0 0 chr4 137456604 137456672 -64871675 + (TTCC)n Simple_repeat Simple_repeat 4 71 0 1658 145 37 7 chr4 137456681 137456977 -64871370 - AluJb SINE Alu -7 305 1 878 196 37 37 chr4 137457076 137457290 -64871057 - AluJo SINE Alu -15 297 84 1404 137 39 4 chr4 137457914 137458170 -64870177 - AluSx SINE Alu -9 303 39 817 162 0 22 chr4 137458430 137458566 -64869781 + FLAM_A SINE Alu 1 133 0 247 212 30 81 chr4 137458655 137458754 -64869593 + L2 LINE L2 564 657 -2657 188 276 286 35 chr4 137458788 137458925 -64869422 + L2 LINE L2 1372 1473 -1841 698 203 133 25 chr4 137458925 137459083 -64869264 + MER96 DNA MER1_type 1 175 0 188 276 286 35 chr4 137459083 137459260 -64869087 + L2 LINE L2 1473 1765 -1549 1651 154 3 49 chr4 137459274 137459771 -64868576 - AluJo SINE Alu 0 482 1 393 198 33 0 chr4 137460208 137460299 -64868048 + AluJ/FLAM SINE Alu 1 94 -208 616 158 29 35 chr4 137460681 137460852 -64867495 + L1MA4 LINE L1 6014 6183 -117 2122 94 14 0 chr4 137460852 137461139 -64867208 + AluSq SINE Alu 1 291 -22 1068 226 40 148 chr4 137461231 137461457 -64866890 + L1MC4 LINE L1 7289 7538 -372 1771 134 3 17 chr4 137461457 137461755 -64866592 - AluJo SINE Alu -18 294 1 1068 226 40 148 chr4 137461755 137462014 -64866333 + L1MC4 LINE L1 7538 7815 -95 2014 122 0 3 chr4 137462014 137462309 -64866038 - AluSx SINE Alu -15 297 4 833 192 6 17 chr4 137462358 137462535 -64865812 + AluJb SINE Alu 131 305 -7 1314 146 51 76 chr4 137463283 137463639 -64864708 - MER46B DNA MER2_type -14 222 1 363 127 0 0 chr4 137463591 137463646 -64864701 + MER46A DNA MER2_type 97 151 -85 * 1121 146 23 0 chr4 137463668 137463839 -64864508 + FAM SINE Alu 1 175 0 2303 70 3 7 chr4 137464105 137464406 -64863941 + AluY SINE Alu 1 300 -11 625 193 0 35 chr4 137464414 137464528 -64863819 - FLAM_C SINE Alu -32 111 2 453 288 66 33 chr4 137464673 137464885 -64863462 - L2 LINE L2 0 3272 3054 1605 117 39 81 chr4 137465061 137465216 -64863131 - AluJo SINE Alu -13 299 139 180 0 0 0 chr4 137465216 137465236 -64863111 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1996 115 0 0 chr4 137465236 137465515 -64862832 - AluSg SINE Alu -31 279 1 1605 117 39 81 chr4 137465515 137465665 -64862682 - AluJo SINE Alu -171 141 6 353 239 101 51 chr4 137465711 137465849 -64862498 + MIR SINE MIR 99 243 -19 507 212 40 0 chr4 137465865 137465964 -64862383 - MER5A DNA MER1_type -15 174 72 744 176 8 0 chr4 137465964 137466089 -64862258 - FLAM_C SINE Alu -6 137 12 1832 139 0 60 chr4 137466100 137466432 -64861915 - AluJo SINE Alu 0 312 1 2319 54 40 0 chr4 137466443 137466739 -64861608 - AluYa5 SINE Alu -3 308 1 473 113 14 14 chr4 137466739 137466810 -64861537 - MER5A DNA MER1_type -115 74 4 1363 170 3 78 chr4 137468189 137468523 -64859824 + AluJb SINE Alu 1 311 0 271 317 154 0 chr4 137468538 137468642 -64859705 - MIR3 SINE MIR -31 177 58 1236 198 51 54 chr4 137468698 137469011 -64859336 + AluJo SINE Alu 1 312 0 345 24 0 0 chr4 137469013 137469055 -64859292 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 892 70 13 32 chr4 137469062 137469220 -64859127 + (GAAA)n Simple_repeat Simple_repeat 1 155 0 223 189 0 0 chr4 137469413 137469450 -64858897 + MIR SINE MIR 107 143 -65 757 109 94 80 chr4 137470049 137470250 -64858097 - MER33 DNA MER1_type 0 324 121 2092 78 7 3 chr4 137470342 137470624 -64857723 + AluSx SINE Alu 6 288 -24 545 153 10 10 chr4 137470651 137470749 -64857598 - MER33 DNA MER1_type -226 98 1 286 268 93 31 chr4 137471022 137471119 -64857228 - MIR SINE MIR -123 139 37 1548 140 57 47 chr4 137471514 137471814 -64856533 - AluJb SINE Alu -9 303 1 824 184 18 6 chr4 137471820 137471983 -64856364 - FAM SINE Alu -7 42 1 2216 93 0 0 chr4 137472014 137472315 -64856032 - AluSx SINE Alu -11 301 1 767 196 0 0 chr4 137472539 137472672 -64855675 + FLAM_A SINE Alu 1 133 0 2340 58 3 3 chr4 137472942 137473237 -64855110 - AluY SINE Alu -15 296 2 532 154 18 18 chr4 137473252 137473410 -64854937 + FLAM_C SINE Alu 2 141 -2 260 106 21 0 chr4 137473447 137473494 -64854853 - AluSp/q SINE Alu -4 299 252 282 279 77 0 chr4 137474098 137474202 -64854145 + MIR SINE MIR 151 262 0 239 241 11 23 chr4 137475041 137475128 -64853219 - AluS SINE Alu -217 86 1 210 329 37 37 chr4 137475562 137475723 -64852624 - L2 LINE L2 -555 2759 2599 544 231 27 20 chr4 137475809 137475857 -64852490 - MIR SINE MIR -55 207 161 1136 187 35 9 chr4 137475857 137476087 -64852260 + MER46A DNA MER2_type 1 236 0 544 231 27 20 chr4 137476087 137476185 -64852162 - MIR SINE MIR -101 161 60 252 135 78 16 chr4 137476478 137476551 -64851796 + L1ME3 LINE L1 6083 6159 -3 1514 177 41 0 chr4 137476662 137476933 -64851414 + AluJo SINE Alu 1 282 -30 1976 106 36 0 chr4 137477707 137477982 -64850365 + AluSx SINE Alu 1 285 -27 2177 100 0 7 chr4 137478199 137478500 -64849847 + AluSq SINE Alu 1 299 -14 903 178 4 80 chr4 137478510 137478735 -64849612 + AluJo SINE Alu 2 209 -103 453 302 0 47 chr4 137478988 137479031 -64849316 + L1M3 LINE L1 5427 5470 -708 1224 185 81 47 chr4 137479031 137479156 -64849191 + AluJo SINE Alu 1 120 -192 2264 90 0 10 chr4 137479156 137479468 -64848879 - AluSc SINE Alu 0 309 1 1224 185 81 47 chr4 137479468 137479640 -64848707 + AluJo SINE Alu 120 308 -4 453 302 0 47 chr4 137479640 137479778 -64848569 + L1M3 LINE L1 5470 5601 -577 2075 121 13 0 chr4 137479849 137480147 -64848200 - AluSx SINE Alu -10 302 1 344 281 51 45 chr4 137480169 137480347 -64848000 + L1ME LINE L1 5579 5757 -409 326 186 14 0 chr4 137480347 137480417 -64847930 + LTR5 LTR ERVK 1 71 -898 1809 163 10 3 chr4 137481323 137481623 -64846724 + AluJo SINE Alu 1 302 -10 2420 57 0 3 chr4 137481641 137481941 -64846406 + AluY SINE Alu 1 299 -12 1353 93 10 16 chr4 137481945 137482139 -64846208 + AluY SINE Alu 1 193 -118 1346 99 31 54 chr4 137482251 137482545 -64845802 - AluYa5 SINE Alu -19 292 6 229 127 0 99 chr4 137482558 137482629 -64845718 - MER5A DNA MER1_type -120 69 6 970 196 0 17 chr4 137482839 137483012 -64845335 + AluJb SINE Alu 111 280 -32 1034 145 41 5 chr4 137483040 137483261 -64845086 + L1 LINE L1 5100 5328 -818 824 181 0 0 chr4 137483262 137483389 -64844958 + FLAM_C SINE Alu 1 127 -6 2076 190 86 12 chr4 137483409 137483841 -64844506 + MLT1C LTR MaLR 3 466 -1 1776 151 17 7 chr4 137484719 137485011 -64843336 + AluJb SINE Alu 1 295 -17 241 221 104 13 chr4 137485385 137485462 -64842885 - MIR SINE MIR -113 149 66 292 294 11 33 chr4 137486464 137486556 -64841791 - MIR SINE MIR -61 147 58 2201 109 7 0 chr4 137486980 137487283 -64841064 + AluSx SINE Alu 1 305 -7 2263 96 3 6 chr4 137487288 137487601 -64840746 + AluSx SINE Alu 1 312 0 2186 83 0 10 chr4 137487857 137488157 -64840190 + AluSc SINE Alu 1 297 -12 1956 132 11 0 chr4 137488213 137488500 -64839847 + AluJo SINE Alu 1 290 -22 260 256 77 43 chr4 137488568 137488685 -64839662 + MER103 DNA DNA 1 121 -45 1027 181 18 36 chr4 137489144 137489365 -64838982 + AluJo SINE Alu 1 217 -95 37 69 0 0 chr4 137489399 137489471 -64838876 + AT_rich Low_complexity Low_complexity 1 72 0 895 146 62 17 chr4 137489477 137489655 -64838692 + AluJo SINE Alu 118 303 -9 234 289 11 44 chr4 137489658 137489748 -64838599 - L1ME4a LINE L1 -88 6033 5947 305 121 61 30 chr4 137490406 137490472 -64837875 - MIR SINE MIR -83 125 58 386 124 10 41 chr4 137490502 137490599 -64837748 + (TTCTCC)n Simple_repeat Simple_repeat 3 96 0 2361 82 0 0 chr4 137492833 137493138 -64835209 - AluY SINE Alu -6 305 1 1705 143 3 60 chr4 137493283 137493597 -64834750 + AluJb SINE Alu 1 296 -16 2200 75 7 0 chr4 137493599 137493902 -64834445 + AluY SINE Alu 1 305 0 1526 180 21 18 chr4 137493909 137494192 -64834155 + AluJb SINE Alu 4 287 -25 330 364 43 0 chr4 137494198 137494338 -64834009 + L2 LINE L2 3125 3270 -2 1496 185 68 0 chr4 137494561 137494860 -64833487 - AluJb SINE Alu 0 317 1 1687 169 7 16 chr4 137495049 137495356 -64832991 + AluJo SINE Alu 1 304 -8 351 0 0 0 chr4 137495563 137495602 -64832745 + (TTAAA)n Simple_repeat Simple_repeat 2 40 0 230 364 0 35 chr4 137495922 137496065 -64832282 + MIR SINE MIR 8 145 -117 514 314 157 5 chr4 137496828 137497216 -64831131 + L2 LINE L2 2248 2694 -620 806 126 0 8 chr4 137497247 137497366 -64830981 - FLAM_C SINE Alu -24 119 2 2088 119 7 0 chr4 137497396 137497706 -64830641 + AluSx SINE Alu 1 312 0 2743 13 0 0 chr4 137497737 137498046 -64830301 - AluYa5 SINE Alu -2 309 1 2162 123 0 0 chr4 137499078 137499388 -64828959 - AluSg SINE Alu 0 310 1 340 280 63 70 chr4 137499391 137499452 -64828895 + L1MC/D LINE L1 5362 5422 -2386 1802 130 0 77 chr4 137499452 137499591 -64828756 + AluJb SINE Alu 1 149 -163 1595 117 98 15 chr4 137499591 137499883 -64828464 + AluSx SINE Alu 1 312 0 1802 130 0 77 chr4 137499883 137500081 -64828266 + AluJb SINE Alu 149 312 0 340 280 63 70 chr4 137500081 137500162 -64828185 + L1MC/D LINE L1 5422 5503 -2305 2049 111 65 51 chr4 137500189 137500342 -64828005 + THE1C LTR MaLR 1 150 -225 1796 81 8 0 chr4 137500342 137500577 -64827770 - AluY SINE Alu -13 298 62 2049 111 65 51 chr4 137500577 137500793 -64827554 + THE1C LTR MaLR 150 375 0 2096 117 0 43 chr4 137500965 137501291 -64827056 - AluSx SINE Alu 0 312 1 548 144 111 0 chr4 137501315 137501431 -64826916 + AluSg/x SINE Alu 184 309 0 1770 120 99 0 chr4 137501518 137501802 -64826545 - AluJb SINE Alu 0 312 1 1903 155 3 13 chr4 137501917 137502226 -64826121 + AluSx SINE Alu 1 306 -6 650 186 65 0 chr4 137502822 137502946 -64825401 + FLAM_C SINE Alu 1 132 -1 210 174 0 0 chr4 137502976 137503022 -64825325 + A-rich Low_complexity Low_complexity 1 46 0 315 275 0 74 chr4 137503064 137503253 -64825094 + GA-rich Low_complexity Low_complexity 2 176 0 677 69 226 0 chr4 137503520 137503622 -64824725 - AluSg1 SINE Alu -183 126 2 2072 105 7 7 chr4 137503672 137503968 -64824379 + AluY SINE Alu 1 296 -15 930 170 0 0 chr4 137503968 137504115 -64824232 + AluSg/x SINE Alu 134 280 -32 225 0 0 0 chr4 137504115 137504140 -64824207 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 2252 71 3 23 chr4 137504143 137504491 -64823856 + AluY SINE Alu 1 311 0 250 366 0 0 chr4 137505028 137505121 -64823226 + MIR3 SINE MIR 76 168 -40 2234 87 3 0 chr4 137505145 137505443 -64822904 - AluSc SINE Alu -5 304 6 1552 177 0 42 chr4 137505885 137506196 -64822151 + AluJo SINE Alu 1 298 -14 1005 287 131 68 chr4 137506560 137506804 -64821543 - L2 LINE L2 -717 2597 2370 1357 165 100 8 chr4 137506804 137507064 -64821283 + AluJo SINE Alu 1 284 -28 459 0 0 0 chr4 137507064 137507115 -64821232 + (CA)n Simple_repeat Simple_repeat 2 52 0 1005 287 131 68 chr4 137507115 137507423 -64820924 - L2 LINE L2 -944 2370 2083 1592 156 65 0 chr4 137507423 137507699 -64820648 + AluJo SINE Alu 1 294 -18 1782 109 51 31 chr4 137507702 137507996 -64820351 + AluSg SINE Alu 1 300 -10 1005 287 131 68 chr4 137507996 137508141 -64820206 - L2 LINE L2 -1232 2082 1850 241 350 128 35 chr4 137508465 137508635 -64819712 - L2 LINE L2 -7 3265 3112 2105 117 3 0 chr4 137508635 137508926 -64819421 + AluSx SINE Alu 1 292 -20 241 350 128 35 chr4 137508926 137509121 -64819226 - L2 LINE L2 -160 3112 2866 249 260 0 0 chr4 137509610 137509660 -64818687 + (CACG)n Simple_repeat Simple_repeat 4 53 0 23 0 0 0 chr4 137509858 137509881 -64818466 + GC_rich Low_complexity Low_complexity 1 23 0 262 170 50 40 chr4 137510150 137510250 -64818097 + (CGGGG)n Simple_repeat Simple_repeat 2 102 0 602 276 76 5 chr4 137511089 137511274 -64817073 - MIR SINE MIR 0 262 65 869 48 0 0 chr4 137511284 137511389 -64816958 - AluSp/q SINE Alu -19 294 190 220 348 24 58 chr4 137511397 137511604 -64816743 - L2 LINE L2 -569 2745 2546 706 313 79 10 chr4 137512692 137512996 -64815351 - L2 LINE L2 -16 3297 2973 2101 116 0 7 chr4 137514677 137514979 -64813368 + AluSx SINE Alu 1 300 -12 444 327 24 30 chr4 137515239 137515407 -64812940 - MIR SINE MIR -76 186 20 1343 94 52 0 chr4 137516413 137516605 -64811742 - AluSg/x SINE Alu -37 275 74 208 250 0 0 chr4 137517132 137517184 -64811163 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 700 193 0 30 chr4 137517208 137517343 -64811004 + FLAM_A SINE Alu 3 133 0 207 281 0 0 chr4 137517416 137517480 -64810867 + A-rich Low_complexity Low_complexity 10 73 0 1937 144 0 13 chr4 137517482 137517795 -64810552 + AluSq SINE Alu 1 309 -4 2019 125 0 6 chr4 137518169 137518480 -64809867 + AluSc SINE Alu 1 309 0 1622 168 0 0 chr4 137518579 137518847 -64809500 + AluSx SINE Alu 1 268 -44 291 54 0 0 chr4 137518859 137518896 -64809451 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1756 151 7 17 chr4 137518906 137519198 -64809149 + AluJb SINE Alu 1 289 -23 664 241 7 0 chr4 137519241 137519378 -64808969 - MLT1A1 LTR MaLR -30 335 198 2027 127 7 0 chr4 137519379 137519679 -64808668 + AluSx SINE Alu 1 302 -10 597 161 11 0 chr4 137520658 137520751 -64807596 - AluJb SINE Alu -20 292 199 1374 196 7 14 chr4 137522308 137522604 -64805743 + AluJb SINE Alu 1 294 -18 1374 191 28 11 chr4 137522967 137523249 -64805098 + AluJb SINE Alu 1 287 -25 461 191 0 53 chr4 137523533 137523627 -64804720 - AluJo SINE Alu -141 171 83 202 316 8 90 chr4 137524362 137524495 -64803852 - MIR SINE MIR -44 218 97 198 0 0 0 chr4 137524790 137524812 -64803535 + (TATATG)n Simple_repeat Simple_repeat 6 27 0 203 311 44 33 chr4 137524908 137524998 -64803349 - L2 LINE L2 0 3272 3182 884 230 29 15 chr4 137525782 137525986 -64802361 - AluJo SINE Alu -19 293 87 359 310 54 0 chr4 137528429 137528558 -64799789 - MIR SINE MIR -53 209 74 402 296 23 38 chr4 137528922 137529054 -64799293 - MIR SINE MIR -62 146 17 908 61 0 0 chr4 137530101 137530216 -64798131 + AluSc SINE Alu 180 294 -15 252 161 0 0 chr4 137530216 137530272 -64798075 + L1PB1 LINE L1 6096 6151 0 * 348 257 66 27 chr4 137530249 137530432 -64797915 + L1ME4a LINE L1 5932 6121 0 895 104 0 76 chr4 137530460 137530604 -64797743 + FLAM_C SINE Alu 1 133 0 331 313 78 39 chr4 137531004 137531183 -64797164 - L1MC4a LINE L1 -1634 6174 5989 368 297 73 24 chr4 137531273 137531438 -64796909 + MIR SINE MIR 35 207 -55 2010 128 3 3 chr4 137531451 137531747 -64796600 - AluSx SINE Alu -16 296 1 1714 151 37 4 chr4 137533008 137533317 -64795030 + AluSx SINE Alu 1 318 0 529 267 9 86 chr4 137533330 137533551 -64794796 + MIR SINE MIR 39 242 -20 249 119 0 0 chr4 137535704 137535746 -64792601 + (TG)n Simple_repeat Simple_repeat 1 42 0 347 250 0 0 chr4 137536049 137536121 -64792226 + MIR SINE MIR 118 189 -73 194 209 0 23 chr4 137536413 137536456 -64791891 - MIR SINE MIR -187 75 34 372 319 169 0 chr4 137536871 137537037 -64791310 + MIR SINE MIR 63 256 -6 533 335 30 25 chr4 137538933 137539169 -64789178 + MIR SINE MIR 2 238 -24 1978 109 3 14 chr4 137539407 137539691 -64788656 + AluSx SINE Alu 28 308 -4 1853 152 0 3 chr4 137539703 137539992 -64788355 + AluJo SINE Alu 6 293 -19 408 282 125 19 chr4 137540490 137540706 -64787641 + L2 LINE L2 2805 3043 -229 2348 110 0 0 chr4 137541722 137542032 -64786315 + AluSx SINE Alu 2 311 -1 314 270 27 0 chr4 137542050 137542163 -64786184 + L1MDa LINE L1 2441 3586 -2954 267 325 13 0 chr4 137543659 137543736 -64784611 - L2 LINE L2 0 3272 3195 1965 144 10 3 chr4 137543867 137544173 -64784174 + AluSx SINE Alu 1 308 -4 215 304 9 45 chr4 137544198 137544310 -64784037 - L2 LINE L2 -295 2977 2870 2175 92 3 3 chr4 137544749 137545110 -64783237 - AluSx SINE Alu 0 361 1 340 212 82 0 chr4 137545854 137545939 -64782408 - MIR SINE MIR -91 171 80 779 226 24 47 chr4 137547279 137547363 -64780984 - MER33 DNA MER1_type -2266 319 235 920 134 0 0 chr4 137547363 137547490 -64780857 + AluJo/FLAM SINE Alu 1 127 -175 2394 82 0 9 chr4 137547493 137547808 -64780539 + AluSx SINE Alu 1 312 0 779 226 24 47 chr4 137547808 137548016 -64780331 - MER33 DNA MER1_type -2352 233 30 2222 106 0 3 chr4 137548034 137548335 -64780012 - AluSq SINE Alu -11 302 3 201 74 0 0 chr4 137548347 137548374 -64779973 + (A)n Simple_repeat Simple_repeat 1 27 0 937 210 0 0 chr4 137548384 137548541 -64779806 + FAM SINE Alu 1 157 -18 275 0 0 28 chr4 137548546 137548582 -64779765 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2348 69 0 0 chr4 137548691 137548979 -64779368 - AluY SINE Alu -23 288 1 2408 63 0 3 chr4 137549155 137549454 -64778893 + AluSx SINE Alu 1 298 -14 1821 115 14 37 chr4 137549813 137550140 -64778207 + AluSx SINE Alu 1 312 0 279 301 10 19 chr4 137550214 137550317 -64778030 + MER5B DNA MER1_type 2 103 -75 422 293 4 85 chr4 137550753 137550839 -64777508 - MIR SINE MIR -3 259 168 859 146 0 29 chr4 137550839 137550976 -64777371 - FLAM_C SINE Alu 0 133 1 422 293 4 85 chr4 137550976 137551131 -64777216 - MIR SINE MIR -94 168 41 475 285 56 77 chr4 137551255 137551479 -64776868 + L1ME LINE L1 5381 5608 -513 2280 96 0 0 chr4 137551479 137551772 -64776575 + AluSx SINE Alu 6 298 -14 270 0 0 0 chr4 137551776 137551806 -64776541 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 475 285 56 77 chr4 137551806 137551913 -64776434 + L1ME LINE L1 5611 5710 -411 1771 195 0 6 chr4 137552068 137552381 -64775966 - AluJo SINE Alu -1 311 1 2055 131 3 10 chr4 137552443 137552755 -64775592 + AluSx SINE Alu 1 310 -2 239 181 139 0 chr4 137552838 137552910 -64775437 + L1ME3 LINE L1 5941 6022 -140 2071 96 11 0 chr4 137552922 137553202 -64775145 - AluSq SINE Alu -12 301 19 22 56 0 0 chr4 137553213 137553249 -64775098 + AT_rich Low_complexity Low_complexity 1 36 0 770 138 9 0 chr4 137553269 137553378 -64774969 - FLAM_C SINE Alu -28 115 6 305 234 23 70 chr4 137553386 137553514 -64774833 + L1ME3 LINE L1 6037 6158 -4 230 143 20 0 chr4 137553654 137553703 -64774644 + GA-rich Low_complexity Low_complexity 2 51 0 203 319 67 0 chr4 137553750 137553876 -64774471 - MIR SINE MIR -70 138 4 257 285 162 34 chr4 137554485 137554664 -64773683 - L2 LINE L2 -97 3175 2974 2212 88 0 20 chr4 137554753 137555050 -64773297 + AluSx SINE Alu 1 291 -21 2107 97 28 0 chr4 137555052 137555340 -64773007 + AluY SINE Alu 1 296 -15 1337 170 0 0 chr4 137555991 137556203 -64772144 + AluJo SINE Alu 9 220 -92 2180 115 0 0 chr4 137556264 137556568 -64771779 - AluY SINE Alu -7 304 1 2187 105 0 0 chr4 137556570 137556865 -64771482 - AluSx SINE Alu -17 295 1 1491 181 19 0 chr4 137556879 137557145 -64771202 - AluSq SINE Alu -8 305 35 1922 155 13 0 chr4 137558072 137558376 -64769971 + AluSx SINE Alu 3 310 -2 344 318 106 0 chr4 137558378 137558510 -64769837 + MIR SINE MIR 49 194 -68 1303 165 4 31 chr4 137558940 137559195 -64769152 - AluJo SINE Alu -53 259 12 230 224 0 0 chr4 137559251 137559300 -64769047 - MIR SINE MIR -78 184 136 355 20 0 20 chr4 137559307 137559357 -64768990 - MSTB LTR MaLR -377 49 1 2325 105 0 0 chr4 137559961 137560274 -64768073 - AluSq SINE Alu 0 313 1 1427 213 59 55 chr4 137560302 137560776 -64767571 - MER74A LTR ERVL -17 541 66 611 171 9 0 chr4 137560776 137560887 -64767460 - MSTB1 LTR MaLR -1 431 320 837 136 0 38 chr4 137560887 137561019 -64767328 + FLAM_C SINE Alu 1 127 -16 2127 133 0 0 chr4 137561025 137561333 -64767014 + AluSx SINE Alu 1 308 -4 1624 132 0 44 chr4 137564112 137564385 -64763962 + AluY SINE Alu 44 304 -7 421 290 0 9 chr4 137565351 137565458 -64762889 - MIR SINE MIR -78 184 79 1717 130 108 0 chr4 137565496 137565765 -64762582 - AluSx SINE Alu -3 309 12 1326 225 19 10 chr4 137566174 137566481 -64761866 - AluJo SINE Alu -2 310 1 183 42 0 0 chr4 137566568 137566592 -64761755 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2036 99 7 27 chr4 137566594 137566888 -64761459 - AluSp SINE Alu -25 288 1 2123 126 0 0 chr4 137567054 137567348 -64760999 + AluSx SINE Alu 1 294 -18 2085 123 0 0 chr4 137567546 137567838 -64760509 + AluSx SINE Alu 1 292 -20 319 274 93 127 chr4 137568421 137568520 -64759827 - MIR SINE MIR -15 247 146 2325 80 3 3 chr4 137568520 137568831 -64759516 - AluSx SINE Alu 0 312 2 319 274 93 127 chr4 137568831 137568968 -64759379 - MIR SINE MIR -116 146 19 263 264 186 23 chr4 137568972 137569101 -64759246 + MIR SINE MIR 34 183 -79 275 318 0 35 chr4 137569344 137569429 -64758918 - MIR SINE MIR -135 127 46 247 238 0 16 chr4 137569932 137569995 -64758352 - MIR SINE MIR -66 142 81 537 150 0 209 chr4 137570133 137570276 -64758071 + MIR SINE MIR 79 162 -100 1572 155 34 24 chr4 137570276 137570572 -64757775 + AluJo SINE Alu 1 299 -13 537 150 0 209 chr4 137570572 137570648 -64757699 + MIR SINE MIR 162 252 -10 207 0 0 0 chr4 137570664 137570687 -64757660 + (CAT)n Simple_repeat Simple_repeat 2 24 0 445 336 112 17 chr4 137571614 137571962 -64756385 + L2 LINE L2 2892 3272 0 3982 117 83 73 chr4 137572505 137573490 -64754857 + pTR5 LTR ERV1 728 2030 -408 268 215 28 56 chr4 137573490 137573597 -64754750 + LTR30 LTR ERV1 375 624 -91 1404 99 0 0 chr4 137573597 137573809 -64754538 + pTR5 LTR ERV1 181 392 -2046 1443 185 3 68 chr4 137573865 137574189 -64754158 - AluJo SINE Alu -9 303 1 2292 111 0 6 chr4 137574338 137574653 -64753694 - AluSq SINE Alu 0 313 1 243 313 30 0 chr4 137574742 137574809 -64753538 + L2 LINE L2 2717 2785 -529 2017 120 0 3 chr4 137574902 137575186 -64753161 + AluSx SINE Alu 1 304 0 190 0 0 0 chr4 137575186 137575207 -64753140 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 207 243 119 67 chr4 137575241 137575514 -64752833 - L2 LINE L2 -173 3099 2829 237 276 0 0 chr4 137575558 137575616 -64752731 + G-rich Low_complexity Low_complexity 2 59 0 2020 145 7 0 chr4 137576449 137576759 -64751588 - AluSx SINE Alu 0 312 1 587 320 6 11 chr4 137576761 137576936 -64751411 + MIR SINE MIR 79 252 -10 1522 170 57 3 chr4 137577083 137577365 -64750982 + AluJo SINE Alu 1 297 -15 369 321 54 0 chr4 137577992 137578104 -64750243 - MIR SINE MIR -62 146 29 1330 137 89 20 chr4 137578376 137578624 -64749723 + AluSq SINE Alu 43 307 -6 788 150 34 0 chr4 137578624 137578771 -64749576 + Tigger2 DNA MER2_type 2557 2708 -10 2294 185 26 56 chr4 137578771 137578941 -64749406 - L1M4 LINE L1 -538 5646 5473 2018 138 0 0 chr4 137578941 137579237 -64749110 - AluSx SINE Alu -16 296 1 2294 185 26 56 chr4 137579237 137579770 -64748577 - L1M4 LINE L1 -711 5473 4926 1241 135 115 45 chr4 137579770 137580058 -64748289 - AluJo SINE Alu -1 311 4 2294 185 26 56 chr4 137580058 137580177 -64748170 - L1M4 LINE L1 -1258 4926 4805 928 138 0 0 chr4 137580177 137580307 -64748040 + FLAM_C SINE Alu 1 130 -3 2294 185 26 56 chr4 137580307 137580390 -64747957 - L1M4 LINE L1 -1379 4805 4776 2094 74 6 89 chr4 137580390 137580716 -64747631 - AluY SINE Alu -12 299 1 2294 185 26 56 chr4 137580716 137580811 -64747536 - L1M4 LINE L1 -1408 4776 4680 1032 171 0 12 chr4 137580818 137580988 -64747359 - AluJo SINE Alu -144 168 1 1056 205 27 0 chr4 137580990 137581248 -64747099 - L1M4 LINE L1 -3644 2502 2238 235 247 123 52 chr4 137582603 137582757 -64745590 - MIR3 SINE MIR -22 186 22 1760 167 0 35 chr4 137582893 137583208 -64745139 + AluJo SINE Alu 1 304 -8 1986 137 0 0 chr4 137583208 137583535 -64744812 + AluSx SINE Alu 1 327 0 2138 100 31 0 chr4 137583660 137583951 -64744396 - AluSp SINE Alu -13 300 1 1704 195 0 3 chr4 137584048 137584355 -64743992 - AluJb SINE Alu -6 306 1 987 177 6 0 chr4 137584672 137584830 -64743517 - FRAM SINE Alu -7 159 1 1969 112 4 7 chr4 137584847 137585124 -64743223 - AluSx SINE Alu 0 312 37 993 201 11 0 chr4 137585862 137586051 -64742296 + AluJb SINE Alu 120 310 -2 401 287 113 59 chr4 137587028 137587505 -64740842 + L2 LINE L2 2715 3265 -7 1311 135 9 33 chr4 137587650 137587732 -64740615 - AluJb SINE Alu -20 292 210 1437 181 105 75 chr4 137587732 137588169 -64740178 + LTR7 LTR ERV1 1 450 0 1311 135 9 33 chr4 137588169 137588301 -64740046 - AluJb SINE Alu -102 210 83 509 179 8 75 chr4 137588302 137588417 -64739930 + MLT1F1 LTR MaLR 1 107 -460 1337 194 99 65 chr4 137588417 137588850 -64739497 - LTR7 LTR ERV1 -2 448 1 509 179 8 75 chr4 137588850 137588868 -64739479 + MLT1F1 LTR MaLR 107 125 -442 2673 169 80 2 chr4 137588884 137589096 -64739251 - MER6A DNA MER2_type -266 599 405 2324 112 0 0 chr4 137589096 137589409 -64738938 + AluSq SINE Alu 1 313 0 2673 169 80 2 chr4 137589409 137589733 -64738614 - MER6A DNA MER2_type -460 405 21 948 152 30 36 chr4 137589733 137589924 -64738423 + FRAM SINE Alu 1 166 0 233 339 79 6 chr4 137589930 137590107 -64738240 + L2 LINE L2 2710 2899 -415 678 241 65 0 chr4 137590194 137590393 -64737954 - MIR SINE MIR -48 214 3 189 247 25 49 chr4 137590449 137590530 -64737817 + L3 LINE CR1 1413 1491 -86 216 163 0 0 chr4 137590885 137590928 -64737419 + GA-rich Low_complexity Low_complexity 1 43 0 372 364 49 0 chr4 137590928 137591090 -64737257 + L1ME LINE L1 5653 5822 -342 360 331 108 7 chr4 137592667 137592806 -64735541 - MIR SINE MIR -60 202 50 333 0 0 0 chr4 137593216 137593253 -64735094 + (CA)n Simple_repeat Simple_repeat 1 37 0 347 167 0 118 chr4 137593809 137593911 -64734436 - MIR SINE MIR 0 262 173 392 250 17 26 chr4 137594473 137594589 -64733758 - MIR SINE MIR -74 134 20 298 299 184 14 chr4 137596806 137596953 -64731394 - MIR SINE MIR -11 251 80 814 196 0 0 chr4 137597175 137597313 -64731034 - FLAM_C SINE Alu -5 138 1 222 250 0 0 chr4 137597567 137597639 -64730708 + (TCCA)n Simple_repeat Simple_repeat 4 75 0 268 391 22 0 chr4 137597673 137597811 -64730536 + MIR3 SINE MIR 34 174 -34 341 306 37 22 chr4 137597892 137598026 -64730321 + MIR SINE MIR 64 199 -63 233 204 0 0 chr4 137599192 137599241 -64729106 + (CA)n Simple_repeat Simple_repeat 1 49 0 659 197 8 0 chr4 137600028 137600150 -64728197 + MIR SINE MIR 63 185 -77 180 200 0 0 chr4 137600502 137600542 -64727805 + G-rich Low_complexity Low_complexity 4 43 0 1937 132 36 0 chr4 137600640 137600921 -64727426 + AluSx SINE Alu 1 291 -21 288 0 0 0 chr4 137604108 137604140 -64724207 + (TG)n Simple_repeat Simple_repeat 2 33 0 381 320 17 6 chr4 137605778 137605950 -64722397 + (TGGG)n Simple_repeat Simple_repeat 2 175 0 209 286 129 23 chr4 137606137 137606308 -64722039 + L2 LINE L2 2871 3059 -213 2136 113 6 25 chr4 137606727 137607045 -64721302 + AluSx SINE Alu 1 312 0 391 260 29 19 chr4 137607616 137607720 -64720627 - MIR SINE MIR -62 146 42 1034 144 6 0 chr4 137607853 137608027 -64720320 + MER46B DNA MER2_type 1 50 -186 1887 105 0 45 chr4 137608144 137608430 -64719917 + AluSq SINE Alu 25 297 -16 1188 82 0 46 chr4 137608430 137608626 -64719721 + MER46B DNA MER2_type 50 236 0 589 269 17 112 chr4 137610302 137610596 -64717751 + L2 LINE L2 2910 3175 -97 435 263 213 6 chr4 137611192 137611352 -64716995 - MIR SINE MIR -11 251 59 2196 48 11 0 chr4 137613790 137614087 -64714260 - AluY SINE Alu 0 310 11 2095 103 10 3 chr4 137615501 137615812 -64712535 + AluSq SINE Alu 1 313 0 370 319 71 33 chr4 137618609 137618819 -64709528 + MIR SINE MIR 44 261 -1 310 308 66 11 chr4 137619119 137619210 -64709137 - L2 LINE L2 0 3272 3177 188 217 116 43 chr4 137619741 137619810 -64708537 + MIR SINE MIR 100 173 -89 201 243 71 43 chr4 137619818 137619888 -64708459 - MIR SINE MIR -69 193 122 1822 143 7 20 chr4 137620120 137620421 -64707926 - AluJo SINE Alu -15 297 1 412 229 12 0 chr4 137620444 137620527 -64707820 + MER2 DNA MER2_type 2 85 -260 1384 171 18 18 chr4 137620571 137620846 -64707501 + MER2 DNA MER2_type 70 344 -1 1003 216 0 0 chr4 137620905 137621076 -64707271 + FAM SINE Alu 5 175 0 1579 165 66 0 chr4 137621834 137622107 -64706240 + AluJo SINE Alu 1 291 -21 312 366 123 41 chr4 137622112 137622137 -64706210 + L1MC5 LINE L1 7561 7583 -378 1308 235 7 23 chr4 137622137 137622260 -64706087 + AluJo SINE Alu 1 125 -187 263 48 0 24 chr4 137622260 137622302 -64706045 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1308 235 7 23 chr4 137622302 137622314 -64706033 + AluJo SINE Alu 125 136 -176 1776 168 3 10 chr4 137622314 137622611 -64705736 + AluJo SINE Alu 1 295 -17 1308 235 7 23 chr4 137622611 137622780 -64705567 + AluJo SINE Alu 136 301 -11 312 366 123 41 chr4 137622780 137623071 -64705276 + L1MC5 LINE L1 7583 7903 -58 2152 110 0 3 chr4 137624106 137624405 -64703942 - AluSx SINE Alu -14 298 1 298 313 47 0 chr4 137624857 137624989 -64703358 + MIR SINE MIR 10 153 -63 206 313 45 80 chr4 137678958 137679134 -64649213 + MIR SINE MIR 18 187 -75 335 321 62 25 chr4 137679650 137679812 -64648535 - MIR SINE MIR -89 173 6 213 39 0 0 chr4 137680135 137680161 -64648186 + (GA)n Simple_repeat Simple_repeat 2 27 0 245 148 0 37 chr4 137681667 137681721 -64646626 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 675 125 9 0 chr4 137681779 137681891 -64646456 - L1MA6 LINE L1 -2 6298 6186 4922 66 17 2 chr4 137681891 137682999 -64645348 - MER11A LTR ERVK 0 1266 1 951 186 12 0 chr4 137682999 137683171 -64645176 - L1MA6 LINE L1 -109 6191 6018 274 93 74 19 chr4 137683163 137683217 -64645130 + L1MA6 LINE L1 5943 5999 -301 * 216 103 0 26 chr4 137684547 137684586 -64643761 - L2 LINE L2 -2 3311 3274 2033 115 69 0 chr4 137685600 137685888 -64642459 - AluSq SINE Alu -5 308 1 225 83 0 0 chr4 137685911 137685947 -64642400 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 209 364 86 7 chr4 137686240 137686380 -64641967 - L3b LINE CR1 -11 1572 1422 519 319 122 24 chr4 137688624 137688912 -64639435 + L3 LINE CR1 1248 1563 -14 234 0 0 0 chr4 137689723 137689749 -64638598 + (TG)n Simple_repeat Simple_repeat 2 27 0 2151 110 7 3 chr4 137690246 137690554 -64637793 - AluSg SINE Alu 0 310 2 688 253 11 22 chr4 137690977 137691155 -64637192 - MLT1G1 LTR MaLR -6 584 409 939 146 22 22 chr4 137691158 137691336 -64637011 + L1MA9 LINE L1 6099 6276 -36 1065 281 66 51 chr4 137691336 137691746 -64636601 - MLT1G1 LTR MaLR -179 416 1 24 0 0 0 chr4 137692153 137692177 -64636170 + AT_rich Low_complexity Low_complexity 1 24 0 451 290 114 12 chr4 137692516 137692707 -64635640 - MLT1L LTR MaLR -309 306 83 706 230 8 117 chr4 137692707 137692879 -64635468 + MER58A DNA MER1_type 1 139 -2281 198 0 0 0 chr4 137692879 137692901 -64635446 + (TTTAG)n Simple_repeat Simple_repeat 4 25 0 706 230 8 117 chr4 137692901 137692976 -64635371 + MER58A DNA MER1_type 139 221 -3 451 290 114 12 chr4 137692976 137693029 -64635318 - MLT1L LTR MaLR -532 83 37 21 36 0 0 chr4 137695056 137695084 -64633263 + AT_rich Low_complexity Low_complexity 1 28 0 238 344 25 8 chr4 137695572 137695694 -64632653 + L3 LINE CR1 1103 1226 -351 378 42 0 0 chr4 137695697 137695745 -64632602 + (TG)n Simple_repeat Simple_repeat 2 49 0 624 288 95 42 chr4 137696626 137696984 -64631363 - LTR33 LTR ERVL -7 514 138 241 268 0 31 chr4 137697077 137697174 -64631173 - LTR33 LTR ERVL -426 95 2 817 244 28 33 chr4 137698339 137698552 -64629795 - MER58A DNA MER1_type -2 222 11 243 146 0 0 chr4 137699120 137699161 -64629186 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 1180 243 103 62 chr4 137699166 137699264 -64629083 - MER90 LTR ERV1 0 575 483 2127 191 57 43 chr4 137699264 137699771 -64628576 + MER67D LTR ERV1 1 514 0 1180 243 103 62 chr4 137699771 137700224 -64628123 - MER90 LTR ERV1 -92 483 1 385 345 166 16 chr4 137700868 137701175 -64627172 - L2 LINE L2 0 3313 2961 216 162 0 0 chr4 137701665 137701702 -64626645 + GA-rich Low_complexity Low_complexity 2 38 0 1022 196 50 0 chr4 137701930 137702129 -64626218 - MER3 DNA MER1_type 0 209 1 495 290 75 33 chr4 137702357 137702698 -64625649 + L1ME LINE L1 5443 5796 -325 267 394 31 45 chr4 137702875 137703162 -64625185 + L2 LINE L2 2990 3272 0 21 36 0 0 chr4 137703656 137703684 -64624663 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr4 137704431 137704460 -64623887 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr4 137705527 137705552 -64622795 + AT_rich Low_complexity Low_complexity 1 25 0 669 359 50 15 chr4 137706358 137706824 -64621523 + L2 LINE L2 2723 3303 -10 258 353 59 60 chr4 137708156 137708610 -64619737 + L2 LINE L2 2603 3060 -212 206 348 193 0 chr4 137709483 137709618 -64618729 - L2 LINE L2 -10 3262 3102 231 61 0 0 chr4 137709640 137709673 -64618674 + (A)n Simple_repeat Simple_repeat 1 33 0 23 0 0 0 chr4 137712563 137712586 -64615761 + AT_rich Low_complexity Low_complexity 1 23 0 354 211 0 0 chr4 137713929 137714033 -64614314 + (TA)n Simple_repeat Simple_repeat 2 105 0 303 271 25 41 chr4 137714035 137714157 -64614190 + L1MC4 LINE L1 6600 6719 -1323 357 264 0 0 chr4 137714190 137714338 -64614009 + (TA)n Simple_repeat Simple_repeat 1 148 0 391 215 6 23 chr4 137714372 137714549 -64613798 + (TA)n Simple_repeat Simple_repeat 1 174 0 2014 194 30 21 chr4 137714616 137714714 -64613633 + Tigger2a DNA MER2_type 2 98 -2610 231 36 0 0 chr4 137714714 137714742 -64613605 + (TCC)n Simple_repeat Simple_repeat 2 29 0 2014 194 30 21 chr4 137714742 137715072 -64613275 + Tigger2a DNA MER2_type 98 434 0 188 125 25 100 chr4 137715088 137715168 -64613179 + (TA)n Simple_repeat Simple_repeat 2 75 0 217 189 19 19 chr4 137715184 137715237 -64613110 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 182 208 21 0 chr4 137715335 137715383 -64612964 + (TA)n Simple_repeat Simple_repeat 2 50 0 236 365 174 0 chr4 137715555 137715670 -64612677 + MER91A DNA MER1_type 14 148 -48 6245 41 1 0 chr4 137716234 137716983 -64611364 - L1PA5 LINE L1 -1 6153 5404 6742 59 13 2 chr4 137716998 137717866 -64610481 - L1PA7 LINE L1 0 6154 5278 1997 90 0 0 chr4 137717863 137718141 -64610206 + L1PA7 LINE L1 5003 5280 -866 * 2121 106 17 3 chr4 137718150 137718443 -64609904 - AluSx SINE Alu -15 297 1 255 61 0 0 chr4 137719145 137719178 -64609169 + (TG)n Simple_repeat Simple_repeat 1 33 0 21 36 0 0 chr4 137719435 137719463 -64608884 + AT_rich Low_complexity Low_complexity 1 28 0 615 38 0 0 chr4 137719463 137719543 -64608804 - L1PA4 LINE L1 -1 6154 6075 297 0 0 0 chr4 137719768 137719801 -64608546 + (CA)n Simple_repeat Simple_repeat 2 34 0 601 292 65 5 chr4 137723112 137723297 -64605050 - MLT1J1 LTR MaLR -250 196 1 186 43 0 0 chr4 137724608 137724631 -64603716 + (TA)n Simple_repeat Simple_repeat 1 23 0 1529 352 91 23 chr4 137725971 137727012 -64601335 - L3 LINE CR1 -206 1371 260 636 312 37 5 chr4 137728148 137728384 -64599963 - MIR SINE MIR -6 256 11 26383 144 13 12 chr4 137728562 137734855 -64593492 + L1PA8 LINE L1 130 6486 -1 21 57 0 0 chr4 137735505 137735540 -64592807 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 137735879 137735900 -64592447 + AT_rich Low_complexity Low_complexity 1 21 0 302 258 108 0 chr4 137735932 137736025 -64592322 + MIR SINE MIR 90 192 -70 875 155 52 26 chr4 137739757 137739950 -64588397 - MER39 LTR ERV1 -85 622 425 696 125 0 0 chr4 137739950 137740046 -64588301 + MSTB LTR MaLR 1 96 -330 1204 243 33 56 chr4 137740046 137740570 -64587777 - PABL_B LTR ERV1 0 667 2 * 1311 187 84 69 chr4 137740570 137740900 -64587447 + MSTB LTR MaLR 92 426 0 521 189 170 52 chr4 137740900 137741052 -64587295 - MER39 LTR ERV1 -278 429 260 363 324 67 42 chr4 137741455 137741693 -64586654 - L2 LINE L2 -841 2473 2230 36 77 0 0 chr4 137742166 137742244 -64586103 + AT_rich Low_complexity Low_complexity 1 78 0 2013 118 0 64 chr4 137742851 137743181 -64585166 + AluSx SINE Alu 1 309 -3 825 235 0 0 chr4 137744121 137744287 -64584060 - AluJo/FRAM SINE Alu 0 302 137 881 121 7 36 chr4 137744287 137744314 -64584033 - AluSq/x SINE Alu -176 136 110 4984 85 28 1 chr4 137744314 137745017 -64583330 - LTR30 LTR ERV1 0 722 1 881 121 7 36 chr4 137745017 137745129 -64583218 - AluSq/x SINE Alu -202 110 1 1923 143 20 0 chr4 137746677 137746971 -64581376 - AluSx SINE Alu -12 300 1 1531 173 71 4 chr4 137747040 137747295 -64581052 + AluJo SINE Alu 2 273 -39 207 0 0 0 chr4 137747307 137747330 -64581017 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 461 233 0 67 chr4 137747331 137747451 -64580896 + MIR SINE MIR 151 262 0 754 175 30 84 chr4 137748843 137749009 -64579338 - MER20 DNA MER1_type -57 162 6 208 109 22 22 chr4 137749479 137749525 -64578822 + A-rich Low_complexity Low_complexity 2 47 0 24 0 0 0 chr4 137749709 137749733 -64578614 + AT_rich Low_complexity Low_complexity 1 24 0 1848 220 37 24 chr4 137749925 137750379 -64577968 + MLT1C LTR MaLR 6 465 -2 6003 193 58 24 chr4 137750764 137752245 -64576102 - Looper DNA T2_type -26 1532 2 14805 174 48 7 chr4 137752406 137753034 -64575313 - L1PB2 LINE L1 -1 6866 6265 1909 160 7 3 chr4 137753034 137753341 -64575006 - AluSx SINE Alu -4 308 1 14805 174 48 7 chr4 137753341 137759327 -64569020 - L1PB2 LINE L1 -602 6265 3 595 291 99 14 chr4 137759710 137759923 -64568424 + MIR SINE MIR 32 262 0 580 368 86 25 chr4 137759952 137760430 -64567917 - L3 LINE CR1 -207 1370 864 363 336 21 0 chr4 137760517 137760664 -64567683 - MIR SINE MIR -57 205 57 23 0 0 0 chr4 137760719 137760742 -64567605 + AT_rich Low_complexity Low_complexity 1 23 0 730 322 61 55 chr4 137760799 137761249 -64567098 - L3 LINE CR1 -838 739 284 2120 125 0 6 chr4 137761249 137761560 -64566787 - AluSc SINE Alu 0 309 1 730 322 61 55 chr4 137761560 137761653 -64566694 - L3 LINE CR1 -1293 284 193 2021 119 0 21 chr4 137762218 137762672 -64565675 - AluSg SINE Alu 0 448 1 651 220 13 7 chr4 137762697 137762847 -64565500 - MLT1E2 LTR MaLR 0 505 355 926 104 0 0 chr4 137762869 137762994 -64565353 - AluJb SINE Alu -187 125 1 987 201 93 82 chr4 137762999 137763353 -64564994 - MLT1E2 LTR MaLR -145 360 3 1988 103 0 4 chr4 137764575 137764848 -64563499 - AluY SINE Alu -13 298 27 3699 17 0 0 chr4 137764948 137765368 -64562979 - L1PA2 LINE L1 -35 6120 5701 1215 29 0 0 chr4 137765365 137765505 -64562842 + L1PA2 LINE L1 5573 5712 -443 * 1431 227 85 13 chr4 137765505 137765892 -64562455 + MER63B DNA MER1_type 22 436 0 236 291 103 17 chr4 137765919 137766036 -64562311 + MLT1L LTR MaLR 466 592 -23 508 266 77 97 chr4 137766130 137766479 -64561868 + L2 LINE L2 2972 3313 0 440 175 61 18 chr4 137766684 137766798 -64561549 - L1MB8 LINE L1 -1 6177 6059 255 158 0 0 chr4 137766809 137766847 -64561500 - L1M4 LINE L1 -1040 5106 5069 467 256 18 94 chr4 137767258 137767535 -64560812 + L1MC4 LINE L1 6488 6743 -1299 2773 216 56 46 chr4 137767539 137768428 -64559919 - Charlie1a DNA MER1_type -253 1202 305 4072 213 52 10 chr4 137768428 137769613 -64558734 + L1MB3 LINE L1 4947 6163 -20 1289 201 5 114 chr4 137769614 137770016 -64558331 - Charlie1a DNA MER1_type -1095 360 3 27 49 0 0 chr4 137770125 137770166 -64558181 + AT_rich Low_complexity Low_complexity 1 41 0 2095 142 0 3 chr4 137770803 137771106 -64557241 + AluSg SINE Alu 1 302 -8 1375 165 91 3 chr4 137771107 137771404 -64556943 + L1MA8 LINE L1 5966 6288 -3 433 214 0 0 chr4 137771903 137771992 -64556355 + MLT1L-int LTR MaLR 27 115 -1620 1708 171 7 14 chr4 137772013 137772305 -64556042 + MLT1A1 LTR MaLR 76 365 0 21 57 0 0 chr4 137772310 137772345 -64556002 + AT_rich Low_complexity Low_complexity 1 35 0 272 301 59 29 chr4 137774091 137774227 -64554120 - MIR SINE MIR -2 260 121 22 56 0 0 chr4 137774349 137774385 -64553962 + AT_rich Low_complexity Low_complexity 1 36 0 184 266 28 92 chr4 137774493 137774602 -64553745 - L2 LINE L2 -313 2959 2858 530 96 0 0 chr4 137774761 137774844 -64553503 - L1PB1 LINE L1 -3 6148 6066 202 338 98 34 chr4 137774969 137775357 -64552990 + L2 LINE L2 2220 2632 -682 3355 196 15 15 chr4 137779066 137779801 -64548546 - L1MB3 LINE L1 -3 6180 5446 1901 146 0 69 chr4 137779960 137780322 -64548025 - MER1B DNA MER1_type 0 337 1 22 0 0 0 chr4 137781552 137781574 -64546773 + AT_rich Low_complexity Low_complexity 1 22 0 2406 75 0 24 chr4 137782792 137783127 -64545220 + L1PA10 LINE L1 5837 6163 -5 225 215 31 15 chr4 137783622 137783687 -64544660 + L1P LINE L1 4175 4240 -1906 27 29 0 0 chr4 137784172 137784206 -64544141 + AT_rich Low_complexity Low_complexity 1 34 0 261 289 47 62 chr4 137784314 137784570 -64543777 + L1 LINE L1 4566 4817 -1329 425 362 25 18 chr4 137785699 137785981 -64542366 - ERVL LTR ERVL -869 4895 4612 1025 311 76 39 chr4 137786093 137786538 -64541809 - ERVL LTR ERVL -1251 4403 3935 2397 74 0 16 chr4 137786538 137786847 -64541500 - AluY SINE Alu -7 304 1 1025 311 76 39 chr4 137786847 137786915 -64541432 - ERVL LTR ERVL -1719 3935 3871 991 295 28 3 chr4 137786925 137787247 -64541100 - MER58B DNA MER1_type -11 330 1 523 329 17 13 chr4 137787552 137787786 -64540561 - ERVL LTR ERVL -2218 3546 3312 1657 306 62 37 chr4 137787860 137788722 -64539625 - ERVL LTR ERVL -2562 3202 2320 412 362 76 24 chr4 137789137 137789604 -64538743 - ERVL LTR ERVL -3432 1639 1185 291 291 0 68 chr4 137789645 137789762 -64538585 - ERVL LTR ERVL -4001 995 887 291 352 60 15 chr4 137790600 137790799 -64537548 - LTR16C LTR ERVL 0 491 284 180 0 0 0 chr4 137790880 137790900 -64537447 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 236 299 15 0 chr4 137790912 137790979 -64537368 - LTR16C LTR ERVL -250 241 174 22 0 0 0 chr4 137791150 137791172 -64537175 + AT_rich Low_complexity Low_complexity 1 22 0 275 283 47 38 chr4 137791416 137791522 -64536825 - MIR SINE MIR -18 244 138 324 370 106 0 chr4 137791528 137791736 -64536611 + L1MC4a LINE L1 5733 5962 -1846 268 267 13 0 chr4 137792210 137792285 -64536062 - MER116 DNA Mariner 0 80 5 3712 267 140 24 chr4 137792532 137794052 -64534295 + L2 LINE L2 726 2486 -828 236 157 0 43 chr4 137794389 137794459 -64533888 - L1ME4a LINE L1 -19 6102 6036 22 56 0 0 chr4 137794477 137794513 -64533834 + AT_rich Low_complexity Low_complexity 1 36 0 976 312 61 20 chr4 137794586 137795077 -64533270 - MLT1J LTR MaLR 0 511 1 200 243 39 97 chr4 137795399 137795502 -64532845 + L2 LINE L2 3169 3265 -7 232 349 78 21 chr4 137795595 137795787 -64532560 - MIR SINE MIR -13 249 47 202 225 0 0 chr4 137796139 137796179 -64532168 + (CATA)n Simple_repeat Simple_repeat 1 40 0 457 269 11 60 chr4 137797688 137797870 -64530477 + MER69A DNA AcHobo 1 173 -4 267 284 53 135 chr4 137797993 137798296 -64530051 + L2 LINE L2 3001 3278 -35 375 273 47 8 chr4 137798298 137798426 -64529921 + MER94 DNA DNA 1 133 -1 1003 181 22 75 chr4 137798608 137798834 -64529513 + MER20 DNA MER1_type 6 219 0 24 53 0 0 chr4 137798909 137798947 -64529400 + AT_rich Low_complexity Low_complexity 1 38 0 248 180 115 16 chr4 137799453 137799514 -64528833 - MIR SINE MIR -71 191 125 234 270 61 47 chr4 137799651 137799799 -64528548 - L2 LINE L2 0 3313 3164 2346 282 150 27 chr4 137800398 137801709 -64526638 - L2 LINE L2 -140 3173 1699 1960 127 0 7 chr4 137801752 137802028 -64526319 - AluJb SINE Alu -19 293 20 444 352 44 51 chr4 137802178 137802690 -64525657 - L2 LINE L2 0 3272 2770 208 337 22 22 chr4 137802750 137802842 -64525505 + L2 LINE L2 2933 3024 -248 186 309 48 48 chr4 137802891 137802975 -64525372 - L2 LINE L2 -809 2505 2422 378 287 166 34 chr4 137803190 137803601 -64524746 - L2 LINE L2 -1209 2105 1641 197 306 28 14 chr4 137803763 137803835 -64524512 + L2 LINE L2 2596 2668 -646 209 329 0 43 chr4 137803992 137804062 -64524285 + L2 LINE L2 3205 3271 -1 698 256 18 40 chr4 137804678 137804901 -64523446 + L2 LINE L2 3094 3311 -2 468 240 80 8 chr4 137804902 137805027 -64523320 + MER103 DNA DNA 15 148 -18 404 235 83 41 chr4 137806133 137806303 -64522044 + MIR SINE MIR 17 184 -56 1409 207 63 98 chr4 137806743 137807352 -64520995 + MLT2B1 LTR ERVL 6 520 0 220 183 100 17 chr4 137809659 137809719 -64518628 + L2 LINE L2 3207 3271 -1 234 62 0 0 chr4 137810366 137810398 -64517949 + (TC)n Simple_repeat Simple_repeat 1 32 0 216 163 0 0 chr4 137810397 137810440 -64517907 + (CA)n Simple_repeat Simple_repeat 1 43 0 * 379 207 3 35 chr4 137810600 137810709 -64517638 - MER58 DNA MER1_type 0 2420 114 550 207 28 12 chr4 137810709 137810961 -64517386 + CT-rich Low_complexity Low_complexity 1 256 0 2167 116 0 16 chr4 137811172 137811475 -64516872 + AluSq SINE Alu 1 298 -15 5808 71 16 24 chr4 137811600 137812386 -64515961 - LTR17 LTR ERV1 0 780 1 334 285 32 24 chr4 137812432 137812555 -64515792 + L2 LINE L2 3190 3313 0 1095 294 78 42 chr4 137812729 137813464 -64514883 + HAL1b LINE L1 85 845 -503 555 296 39 4 chr4 137813513 137813743 -64514604 + L1MC4a LINE L1 5679 5916 -1892 2137 162 83 0 chr4 137814450 137814845 -64513502 + MSTA LTR MaLR 1 428 0 205 346 123 0 chr4 137818014 137818095 -64510252 + MIR SINE MIR 33 123 -85 978 218 77 13 chr4 137819009 137819307 -64509040 - MER33 DNA MER1_type -3 321 5 2091 136 0 13 chr4 137819565 137819873 -64508474 + AluSx SINE Alu 3 306 -6 325 296 182 15 chr4 137820060 137820192 -64508155 - L2 LINE L2 -13 3300 3147 277 254 0 16 chr4 137820263 137820326 -64508021 + L2 LINE L2 3250 3311 -2 2515 72 0 0 chr4 137821018 137821325 -64507022 + AluY SINE Alu 1 307 -4 21 0 0 0 chr4 137824120 137824141 -64504206 + AT_rich Low_complexity Low_complexity 1 21 0 2488 56 0 7 chr4 137824290 137824593 -64503754 - AluY SINE Alu -10 301 1 22 0 0 0 chr4 137825083 137825105 -64503242 + AT_rich Low_complexity Low_complexity 1 22 0 378 0 0 0 chr4 137826919 137826961 -64501386 + (TG)n Simple_repeat Simple_repeat 1 42 0 576 297 110 14 chr4 137826983 137827192 -64501155 + MIR SINE MIR 13 241 -21 1996 166 11 8 chr4 137827631 137828005 -64500342 - L1PB4 LINE L1 0 6156 5782 2268 105 13 34 chr4 137828126 137828508 -64499839 - L1PB4 LINE L1 -379 5777 5404 1472 331 87 40 chr4 137828680 137829769 -64498578 + L2 LINE L2 1897 3044 -269 1928 259 83 11 chr4 137829769 137830320 -64498027 + MLT1G1 LTR MaLR 5 595 0 1472 331 87 40 chr4 137830320 137830428 -64497919 + L2 LINE L2 3044 3145 -168 951 220 43 0 chr4 137830881 137831090 -64497257 - MER58A DNA MER1_type -6 218 1 189 0 0 0 chr4 137832657 137832678 -64495669 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 551 236 32 0 chr4 137832736 137832859 -64495488 + MER94 DNA DNA 5 131 -3 771 156 30 24 chr4 137833013 137833180 -64495167 - MER53 DNA DNA -1 188 21 486 346 74 22 chr4 137833188 137833738 -64494609 + HERV16 LTR ERVL 1171 1823 -3493 1045 364 46 28 chr4 137833768 137834565 -64493782 + HERV16 LTR ERVL 1882 2693 -2961 2087 99 7 11 chr4 137834583 137834866 -64493481 - AluSc SINE Alu -27 282 1 406 337 130 30 chr4 137834931 137835299 -64493048 + HERV16 LTR ERVL 2791 3195 -2459 594 302 125 61 chr4 137835329 137835939 -64492408 + HERV16 LTR ERVL 3748 4396 -1258 2094 174 37 32 chr4 137836321 137836869 -64491478 - MLT2A2 LTR ERVL 0 554 1 277 315 9 18 chr4 137836960 137837071 -64491276 - LTR33 LTR ERVL -8 513 404 434 364 34 0 chr4 137837211 137837417 -64490930 - LTR33 LTR ERVL -306 215 3 1453 136 4 66 chr4 137837552 137837824 -64490523 + MER2 DNA MER2_type 1 255 -90 8788 176 59 12 chr4 137837826 137839659 -64488688 + L1MC3 LINE L1 5868 7785 0 377 312 112 0 chr4 137840173 137840298 -64488049 - L2 LINE L2 -1 3271 3133 532 271 191 9 chr4 137840548 137840758 -64487589 + MER77 LTR ERV1 125 372 -233 1305 217 28 15 chr4 137841079 137841430 -64486917 - MLT2D LTR ERVL 0 414 8 313 346 33 79 chr4 137841892 137842280 -64486067 - L2 LINE L2 -252 3020 2645 262 254 0 0 chr4 137842573 137842640 -64485707 - LTR33A LTR ERVL -9 514 448 257 264 139 0 chr4 137842970 137843042 -64485305 - LTR33A LTR ERVL -381 142 61 198 271 0 0 chr4 137843810 137843858 -64484489 - L2 LINE L2 -38 3234 3187 23 33 0 0 chr4 137843873 137843903 -64484444 + AT_rich Low_complexity Low_complexity 1 30 0 858 241 26 30 chr4 137845512 137845744 -64482603 + MIR SINE MIR 28 258 -4 261 393 0 8 chr4 137845769 137845891 -64482456 - MIR3 SINE MIR -6 202 82 320 158 26 35 chr4 137845949 137846063 -64482284 + (CATATA)n Simple_repeat Simple_repeat 2 114 0 7023 139 26 17 chr4 137846069 137848351 -64479996 + Tigger1 DNA MER2_type 24 2418 0 25 65 0 0 chr4 137848560 137848606 -64479741 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr4 137848665 137848688 -64479659 + AT_rich Low_complexity Low_complexity 1 23 0 1612 185 4 14 chr4 137848695 137848976 -64479371 + AluJo SINE Alu 8 285 -27 1680 65 0 0 chr4 137849071 137849272 -64479075 - AluY SINE Alu -14 297 97 32 0 0 0 chr4 137849435 137849467 -64478880 + AT_rich Low_complexity Low_complexity 1 32 0 594 300 82 0 chr4 137851483 137851653 -64476694 - MIR SINE MIR -13 249 66 376 356 67 0 chr4 137853547 137853727 -64474620 - MLT1L LTR MaLR -418 197 6 2660 48 0 0 chr4 137855149 137855459 -64472888 + AluY SINE Alu 1 310 -1 27 29 0 0 chr4 137855676 137855710 -64472637 + AT_rich Low_complexity Low_complexity 1 34 0 314 272 9 35 chr4 137856216 137856330 -64472017 - MLT1L LTR MaLR 0 615 505 2110 112 0 14 chr4 137856484 137856802 -64471545 + AluY SINE Alu 1 314 0 318 269 26 0 chr4 137856988 137857066 -64471281 - MLT1I LTR MaLR -17 392 313 2381 127 0 3 chr4 137857076 137857446 -64470901 - L1PB1 LINE L1 -1 6866 6498 13121 199 12 4 chr4 137857555 137857607 -64470740 - L1PB1 LINE L1 -607 6260 6210 450 0 0 0 chr4 137857607 137857657 -64470690 + (TA)n Simple_repeat Simple_repeat 2 51 0 13121 199 12 4 chr4 137857657 137860688 -64467659 - L1PB1 LINE L1 -657 6210 3153 4260 203 87 9 chr4 137860705 137861673 -64466674 - L1PB1 LINE L1 -5815 1048 6 235 291 0 0 chr4 137861710 137861765 -64466582 - MLT1I LTR MaLR -137 272 218 2664 261 45 16 chr4 137861803 137862622 -64465725 - L1ME1 LINE L1 -8 6227 5385 368 248 116 0 chr4 137862649 137862770 -64465577 - L1ME1 LINE L1 -3346 2869 2735 29 0 0 0 chr4 137862778 137862807 -64465540 + AT_rich Low_complexity Low_complexity 1 29 0 623 219 36 36 chr4 137862922 137863059 -64465288 + FRAM SINE Alu 10 146 -30 288 0 0 0 chr4 137863060 137863092 -64465255 + (TAAAA)n Simple_repeat Simple_repeat 1 32 0 682 255 7 0 chr4 137863093 137863242 -64465105 - MER8 DNA MER2_type -86 153 4 1491 281 35 9 chr4 137863243 137864003 -64464344 - L1ME1 LINE L1 -3527 2688 1948 327 336 9 9 chr4 137864222 137864332 -64464015 + LTR67 LTR ERVL 108 217 -340 323 265 12 12 chr4 137864414 137864497 -64463850 - L1MC4 LINE L1 -1346 6696 6614 1625 261 86 2 chr4 137864526 137865070 -64463277 - L1MC4 LINE L1 -215 7827 7238 813 257 104 20 chr4 137865078 137865362 -64462985 - L1MC4 LINE L1 -773 7012 6730 1929 169 0 0 chr4 137865362 137865669 -64462678 + AluSg SINE Alu 3 309 -1 813 257 104 20 chr4 137865669 137865727 -64462620 - L1MC4 LINE L1 -1055 6730 6678 368 331 171 8 chr4 137866525 137866770 -64461577 + L1M2 LINE L1 173 457 -5856 5976 259 62 25 chr4 137867298 137870581 -64457766 + L1M2 LINE L1 887 4240 -2142 1545 184 81 50 chr4 137870581 137870999 -64457348 - MSTB1 LTR MaLR -1 431 1 5976 259 62 25 chr4 137870999 137871053 -64457294 + L1M2 LINE L1 4240 4291 -2091 16524 80 7 5 chr4 137871054 137873302 -64455045 - L1PA5 LINE L1 -3303 2843 592 19362 64 2 4 chr4 137873302 137876628 -64451719 + L1PA5 LINE L1 2857 6154 0 5978 192 27 3 chr4 137876638 137878334 -64450013 + L1M2 LINE L1 4295 6027 -521 749 122 0 0 chr4 137878352 137878475 -64449872 + L1MA9 LINE L1 6188 6310 -2 497 189 0 44 chr4 137878748 137878907 -64449440 + GA-rich Low_complexity Low_complexity 3 154 0 647 260 137 32 chr4 137879121 137879340 -64449007 + MIR SINE MIR 1 242 -20 241 241 153 66 chr4 137879885 137880022 -64448325 - MIR SINE MIR -65 197 49 1905 214 8 3 chr4 137882010 137882366 -64445981 - MLT1A1 LTR MaLR -7 358 1 479 344 130 25 chr4 137882518 137882921 -64445426 + L2 LINE L2 1897 2353 -961 1574 191 22 48 chr4 137882921 137883292 -64445055 + MLT1A1 LTR MaLR 4 364 -1 479 344 130 25 chr4 137883292 137883333 -64445014 + L2 LINE L2 2353 2388 -926 376 232 74 0 chr4 137884021 137884116 -64444231 + MER58C DNA MER1_type 114 215 0 318 115 0 0 chr4 137885714 137885766 -64442581 + (TC)n Simple_repeat Simple_repeat 1 52 0 1643 173 0 26 chr4 137885967 137886279 -64442068 + MER31A LTR ERV1 1 304 -181 219 361 95 36 chr4 137886693 137886967 -64441380 + L2 LINE L2 2658 2947 -367 433 264 99 22 chr4 137887026 137887208 -64441139 + L2 LINE L2 3118 3313 0 1543 205 104 72 chr4 137888324 137888839 -64439508 - Charlie2a DNA MER1_type -108 2754 2257 1107 198 25 90 chr4 137888839 137889162 -64439185 - AluJb SINE Alu 0 302 1 1543 205 104 72 chr4 137889162 137889839 -64438508 - Charlie2a DNA MER1_type -605 2257 1463 829 275 231 15 chr4 137889888 137890295 -64438052 - Charlie2b DNA MER1_type -2112 670 176 3358 207 74 10 chr4 137890295 137891169 -64437178 + MER63C DNA MER1_type 1 930 0 1155 313 31 31 chr4 137891534 137891978 -64436369 + LTR16A LTR ERVL 7 450 0 1561 309 19 37 chr4 137891979 137892607 -64435740 + HERV16 LTR ERVL 2 618 -4378 2535 180 44 69 chr4 137892712 137893440 -64434907 + L1MD2 LINE L1 5649 6358 -1 403 325 108 41 chr4 137893697 137894233 -64434114 + L1 LINE L1 3963 4534 -1612 1885 138 3 38 chr4 137894310 137894630 -64433717 + AluSx SINE Alu 1 309 -3 937 192 6 0 chr4 137895486 137895663 -64432684 - L1P LINE L1 -1537 4609 4432 * 5723 85 9 6 chr4 137895655 137896455 -64431892 + L1PA14 LINE L1 5360 6161 0 293 270 22 11 chr4 137897260 137897349 -64430998 + LTR33 LTR ERVL 5 94 -427 708 285 86 8 chr4 137897404 137897660 -64430687 + LTR33 LTR ERVL 238 513 -8 268 159 0 127 chr4 137898245 137898308 -64430039 - L2 LINE L2 -4 3309 3255 307 258 126 20 chr4 137900554 137900705 -64427642 - HAL1b LINE L1 -191 1157 991 24 77 0 0 chr4 137900710 137900762 -64427585 + AT_rich Low_complexity Low_complexity 1 52 0 2110 141 0 0 chr4 137900894 137901199 -64427148 - AluSg SINE Alu -5 305 1 1338 283 60 37 chr4 137901199 137901476 -64426871 - HAL1b LINE L1 -543 805 536 1712 211 81 0 chr4 137901476 137901935 -64426412 - LTR54B LTR ERV1 -2 496 1 1338 283 60 37 chr4 137901935 137902391 -64425956 - HAL1b LINE L1 -812 536 55 1902 132 0 14 chr4 137904101 137904397 -64423950 - AluSx SINE Alu -1 311 20 7623 98 15 0 chr4 137907152 137908275 -64420072 - L1P LINE L1 -743 5403 4264 213 39 0 0 chr4 137908445 137908471 -64419876 + (TC)n Simple_repeat Simple_repeat 2 27 0 678 236 111 11 chr4 137909880 137910151 -64418196 + MER33 DNA MER1_type 1 298 -26 1222 230 48 60 chr4 137910151 137910680 -64417667 + MER39 LTR ERV1 1 707 0 207 220 20 0 chr4 137912242 137912334 -64416013 + (CATATA)n Simple_repeat Simple_repeat 1 93 0 256 309 27 18 chr4 137913084 137913194 -64415153 - MER5A DNA MER1_type -75 114 4 6101 136 67 41 chr4 137913313 137914513 -64413834 + Tigger3b DNA MER2_type 1 1231 0 21 0 0 0 chr4 137914808 137914829 -64413518 + AT_rich Low_complexity Low_complexity 1 21 0 224 417 0 24 chr4 137914993 137915120 -64413227 + L2 LINE L2 2926 3049 -223 2674 88 6 0 chr4 137915428 137915781 -64412566 - THE1A LTR MaLR 0 355 1 21 57 0 0 chr4 137916264 137916299 -64412048 + AT_rich Low_complexity Low_complexity 1 35 0 550 314 47 93 chr4 137916786 137917258 -64411089 + L2 LINE L2 2862 3311 -2 541 303 59 42 chr4 137917259 137917787 -64410560 + L1M4 LINE L1 4061 4597 -1549 4721 76 0 0 chr4 137918488 137919095 -64409252 - L1PA7 LINE L1 -6 6148 5542 6106 192 30 45 chr4 137919678 137921399 -64406948 - L1MB1 LINE L1 0 6404 4658 2322 71 3 0 chr4 137921399 137921694 -64406653 - AluY SINE Alu -15 296 1 6106 192 30 45 chr4 137921694 137922217 -64406130 - L1MB1 LINE L1 -1746 4658 4205 2032 156 34 0 chr4 137922217 137922569 -64405778 - THE1B LTR MaLR 0 364 1 6106 192 30 45 chr4 137922569 137922794 -64405553 - L1MB1 LINE L1 -2199 4205 3978 2168 264 61 30 chr4 137922836 137923975 -64404372 - L1MB1 LINE L1 -4516 1787 798 366 354 43 19 chr4 137924120 137924281 -64404066 - L1M3de LINE L1 -5203 688 524 777 308 70 63 chr4 137924347 137924973 -64403374 - L1M3de LINE L1 -5220 671 3 25 31 0 0 chr4 137924979 137925011 -64403336 + AT_rich Low_complexity Low_complexity 1 32 0 35 24 0 0 chr4 137926015 137926057 -64402290 + AT_rich Low_complexity Low_complexity 1 42 0 1548 177 0 0 chr4 137926102 137926385 -64401962 + AluSc SINE Alu 1 283 -26 23 0 0 0 chr4 137926623 137926646 -64401701 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr4 137927549 137927571 -64400776 + (CACAA)n Simple_repeat Simple_repeat 4 25 0 25 0 0 0 chr4 137928818 137928843 -64399504 + AT_rich Low_complexity Low_complexity 1 25 0 1839 140 0 21 chr4 137929053 137929338 -64399009 + AluSx SINE Alu 1 279 -33 276 30 0 0 chr4 137929341 137929374 -64398973 + (TAA)n Simple_repeat Simple_repeat 2 34 0 240 338 111 25 chr4 137930739 137930937 -64397410 + MIR SINE MIR 21 235 -27 395 281 74 0 chr4 137930984 137931105 -64397242 + MIR3 SINE MIR 64 193 -15 355 161 0 8 chr4 137931320 137931392 -64396955 + L1PA15 LINE L1 5886 5955 -226 1756 168 3 20 chr4 137932025 137932328 -64396019 + AluJo SINE Alu 1 298 -14 195 69 0 0 chr4 137934087 137934116 -64394231 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 621 308 45 27 chr4 137934259 137934483 -64393864 - MIR SINE MIR -3 259 32 284 236 114 50 chr4 137934671 137934721 -64393626 + MER103 DNA DNA 1 46 -120 1987 143 0 3 chr4 137934721 137935014 -64393333 - AluSx SINE Alu -20 292 1 284 236 114 50 chr4 137935014 137935103 -64393244 + MER103 DNA DNA 46 149 -17 5710 103 0 0 chr4 137935229 137936776 -64391571 + L1P3 LINE L1 6 1607 -4854 3080 122 21 2 chr4 137936876 137937352 -64390995 - L1P4 LINE L1 -371 5795 5311 180 0 0 0 chr4 137937354 137937374 -64390973 + (TTG)n Simple_repeat Simple_repeat 2 21 0 427 250 55 8 chr4 137937451 137937579 -64390768 + L2 LINE L2 3176 3309 -4 207 162 0 0 chr4 137937585 137937622 -64390725 + GA-rich Low_complexity Low_complexity 4 40 0 381 333 75 10 chr4 137938548 137938749 -64389598 + HAL1 LINE L1 348 561 -1946 1658 199 7 29 chr4 137938778 137939196 -64389151 - L1MC3 LINE L1 -675 7110 6702 * 2068 253 12 54 chr4 137939195 137939405 -64388942 - L1MCa LINE L1 -3311 3253 3036 1675 127 4 4 chr4 137939405 137939657 -64388690 + AluSg SINE Alu 57 308 -2 2068 253 12 54 chr4 137939657 137940182 -64388165 - L1MCa LINE L1 -3528 3036 2549 293 213 25 0 chr4 137940231 137940311 -64388036 - L1MCa LINE L1 -4095 2469 2388 458 279 39 59 chr4 137940322 137940526 -64387821 - L1MCa LINE L1 -5845 200 1 24 32 0 0 chr4 137941552 137941583 -64386764 + AT_rich Low_complexity Low_complexity 1 31 0 228 269 0 51 chr4 137941611 137941689 -64386658 + Charlie8 DNA MER1_type 131 204 -2213 316 305 11 21 chr4 137942047 137942142 -64386205 + MIR SINE MIR 31 124 -138 240 108 27 0 chr4 137942181 137942218 -64386129 - MLT2E LTR ERVL -14 614 577 9998 117 16 1 chr4 137942334 137943774 -64384573 + THE1B-int LTR MaLR 119 1580 0 2047 126 50 31 chr4 137943774 137944131 -64384216 + THE1B LTR MaLR 1 364 0 309 292 0 0 chr4 137944142 137944255 -64384092 + L1MC/D LINE L1 5349 5461 -781 26383 115 9 4 chr4 137944266 137949194 -64379153 - L1PA8 LINE L1 -8 6164 1211 24 32 0 0 chr4 137950074 137950105 -64378242 + AT_rich Low_complexity Low_complexity 1 31 0 1797 124 4 18 chr4 137950552 137950826 -64377521 - AluSx SINE Alu -6 306 37 232 217 19 94 chr4 137951001 137951107 -64377240 + LTR67 LTR ERVL 444 541 -16 260 355 13 0 chr4 137951363 137951439 -64376908 - L2 LINE L2 -4 3309 3233 185 322 69 29 chr4 137951477 137951651 -64376696 - L2 LINE L2 -12 3301 3121 986 54 78 0 chr4 137951871 137952000 -64376347 + MER85 DNA T2_type 1 139 0 1021 195 64 8 chr4 137952061 137952297 -64376050 - AluJo SINE Alu -20 292 44 327 296 94 61 chr4 137952364 137952692 -64375655 - L1ME LINE L1 -523 5992 5654 781 260 88 33 chr4 137953262 137953755 -64374592 - L1MDa LINE L1 -3568 2972 2455 311 254 80 0 chr4 137954067 137954172 -64374175 - MLT1H LTR MaLR 0 555 431 334 258 172 18 chr4 137954191 137954354 -64373993 - MLT1H LTR MaLR -244 305 118 815 207 10 72 chr4 137954380 137954588 -64373759 + MER77 LTR ERV1 1 195 -410 1269 261 85 47 chr4 137954603 137955051 -64373296 + MER77 LTR ERV1 134 598 -7 1762 244 29 20 chr4 137955173 137955721 -64372626 + L1M4 LINE L1 4507 5059 -1087 1935 156 45 31 chr4 137955832 137956191 -64372156 + THE1B LTR MaLR 1 364 0 1310 201 4 0 chr4 137956191 137956464 -64371883 + THE1B-int LTR MaLR 1 274 -1306 467 307 0 0 chr4 137957134 137957248 -64371099 + MLT1I LTR MaLR 33 146 -263 201 94 0 0 chr4 137957384 137957416 -64370931 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 488 307 64 51 chr4 137958021 137958334 -64370013 + L2 LINE L2 2995 3311 -2 259 341 167 0 chr4 137958395 137958527 -64369820 - MIR SINE MIR -89 173 20 2702 19 0 3 chr4 137959116 137959427 -64368920 - AluY SINE Alu -1 310 1 22 0 0 0 chr4 137959925 137959947 -64368400 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chr4 137960658 137960709 -64367638 + AT_rich Low_complexity Low_complexity 1 51 0 183 375 36 9 chr4 137960768 137960880 -64367467 + L3 LINE CR1 1052 1166 -411 257 324 28 28 chr4 137961339 137961447 -64366900 - MER91C DNA MER1_type -22 118 11 212 310 11 58 chr4 137961454 137961541 -64366806 - L2 LINE L2 -554 2760 2678 413 326 67 36 chr4 137961587 137962014 -64366333 - L2 LINE L2 0 3313 2794 910 179 42 11 chr4 137965931 137966121 -64362226 - L1PB4 LINE L1 -6 6150 5955 2253 104 3 0 chr4 137966674 137966973 -64361374 + AluSp SINE Alu 1 300 -13 26 88 0 0 chr4 137967120 137967188 -64361159 + AT_rich Low_complexity Low_complexity 1 68 0 26 0 0 0 chr4 137967912 137967938 -64360409 + AT_rich Low_complexity Low_complexity 1 26 0 199 350 165 0 chr4 137969537 137969574 -64358773 - MIR SINE MIR -63 145 115 450 0 0 0 chr4 137969574 137969624 -64358723 + (TA)n Simple_repeat Simple_repeat 1 50 0 199 350 165 0 chr4 137969624 137969683 -64358664 - MIR SINE MIR -93 115 33 186 329 13 13 chr4 137970221 137970297 -64358050 + L2 LINE L2 3205 3280 -33 459 338 12 25 chr4 137970492 137970653 -64357694 - MIR SINE MIR -62 146 3 412 260 66 99 chr4 137971228 137971313 -64357034 - L1M4 LINE L1 -2947 3199 3113 2528 53 7 0 chr4 137971313 137971615 -64356732 - AluSq SINE Alu -9 304 1 412 260 66 99 chr4 137971615 137971891 -64356456 - L1M4 LINE L1 -3033 3113 2850 24 67 0 0 chr4 137972214 137972259 -64356088 + AT_rich Low_complexity Low_complexity 1 45 0 257 340 97 82 chr4 137972552 137973258 -64355089 + L2 LINE L2 1992 2715 -599 1689 150 60 38 chr4 137973258 137973625 -64354722 - THE1C LTR MaLR 0 375 1 257 340 97 82 chr4 137973625 137973776 -64354571 + L2 LINE L2 2715 2862 -452 233 350 53 83 chr4 137973823 137974089 -64354258 + L2 LINE L2 3015 3272 0 253 336 18 30 chr4 137974228 137974363 -64353984 - MIR SINE MIR -71 137 2 549 267 126 19 chr4 137974825 137975031 -64353316 - MIR SINE MIR -26 236 9 1132 212 89 54 chr4 137975318 137975856 -64352491 + MER67C LTR ERV1 1 514 0 1291 0 0 0 chr4 137976256 137976397 -64351950 - L1P1 LINE L1 -451 5704 5564 * 2945 31 0 0 chr4 137976391 137976746 -64351601 + L1HS LINE L1 5801 6155 0 267 93 0 0 chr4 137976748 137976791 -64351556 + (A)n Simple_repeat Simple_repeat 1 43 0 216 0 0 0 chr4 137977364 137977388 -64350959 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1782 124 7 11 chr4 137978169 137978442 -64349905 + AluSx SINE Alu 37 308 -4 1717 184 21 24 chr4 137979290 137979664 -64348683 - L1MA8 LINE L1 -23 6268 5896 234 321 0 9 chr4 137979776 137979882 -64348465 + L1ME LINE L1 843 947 -5123 25 0 0 0 chr4 137980787 137980812 -64347535 + AT_rich Low_complexity Low_complexity 1 25 0 359 349 80 15 chr4 137981007 137981271 -64347076 + L1MCc LINE L1 158 438 -5985 180 0 0 0 chr4 137981787 137981807 -64346540 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 273 215 32 21 chr4 137981825 137981918 -64346429 + L1MCc LINE L1 1263 1356 -5067 196 209 15 15 chr4 137981923 137981990 -64346357 + A-rich Low_complexity Low_complexity 2 68 0 949 306 60 40 chr4 137982007 137982865 -64345482 + L1MCc LINE L1 1366 2449 -4569 2595 14 0 0 chr4 137982865 137983152 -64345195 + AluYb8 SINE Alu 29 315 -3 949 306 60 40 chr4 137983152 137983260 -64345087 + L1MCc LINE L1 2449 2553 -4465 548 253 32 16 chr4 137983322 137983508 -64344839 + L1MCc LINE L1 2560 2748 -4374 1051 319 42 15 chr4 137983508 137983915 -64344432 - LTR16A LTR ERVL -15 435 18 1296 95 0 19 chr4 137984456 137984705 -64343642 + (GGAA)n Simple_repeat Simple_repeat 3 245 0 237 391 41 12 chr4 137986142 137986311 -64342036 + MIR3 SINE MIR 17 201 -48 21 0 0 0 chr4 137986478 137986499 -64341848 + AT_rich Low_complexity Low_complexity 1 21 0 233 196 0 0 chr4 137986739 137986790 -64341557 - L1MC4 LINE L1 -1340 6702 6652 210 167 0 21 chr4 137987538 137987586 -64340761 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 1710 223 39 41 chr4 137988143 137988627 -64339720 + MER31A LTR ERV1 3 485 0 2590 99 3 0 chr4 137989195 137989549 -64338798 + THE1A LTR MaLR 1 355 0 11027 105 15 5 chr4 137989549 137991113 -64337234 + THE1A-int LTR MaLR 1 1580 0 2385 99 15 0 chr4 137991113 137991446 -64336901 + THE1A LTR MaLR 1 338 -17 335 293 157 0 chr4 137991825 137991972 -64336375 - MIR SINE MIR -55 207 38 228 256 58 12 chr4 137992249 137992335 -64336012 - L1ME LINE L1 -351 5811 5722 410 313 9 0 chr4 137992482 137992594 -64335753 + MLT1E LTR MaLR 51 163 -430 * 635 209 6 37 chr4 137992561 137992724 -64335623 + MLT1E1 LTR MaLR 103 260 -394 680 224 47 18 chr4 137993806 137993976 -64334371 - MER45A DNA AcHobo 0 178 4 352 241 86 123 chr4 137994468 137994655 -64333692 + MLT1J LTR MaLR 226 405 -106 366 91 0 0 chr4 137996087 137996142 -64332205 + (CA)n Simple_repeat Simple_repeat 2 56 0 331 346 57 18 chr4 137997100 137997328 -64331019 + HAL1 LINE L1 1072 1308 -1199 28 79 0 0 chr4 137998122 137998185 -64330162 + AT_rich Low_complexity Low_complexity 1 63 0 32 26 0 0 chr4 137998826 137998865 -64329482 + AT_rich Low_complexity Low_complexity 1 39 0 2195 97 0 0 chr4 137998910 137999231 -64329116 + AluSc SINE Alu 1 321 0 22 0 0 0 chr4 137999430 137999452 -64328895 + AT_rich Low_complexity Low_complexity 1 22 0 206 302 101 34 chr4 137999701 137999850 -64328497 - MIR SINE MIR -56 206 48 50 59 0 0 chr4 137999987 138000072 -64328275 + AT_rich Low_complexity Low_complexity 1 85 0 2071 133 0 0 chr4 138000494 138000794 -64327553 + AluSc SINE Alu 1 300 -9 41467 61 5 1 chr4 138000907 138007034 -64321313 - L1PA5 LINE L1 -1 6153 11 6420 92 6 2 chr4 138007169 138009158 -64319189 + L1PA14 LINE L1 4159 6161 0 2364 155 10 0 chr4 138010221 138010620 -64317727 - MER57A LTR ERV1 0 403 1 253 291 73 45 chr4 138011896 138012143 -64316204 - L1M4 LINE L1 -1141 5005 4752 1838 220 43 24 chr4 138012151 138012642 -64315705 - MLT1D LTR MaLR -4 501 2 347 254 8 42 chr4 138012864 138012982 -64315365 - L1M4 LINE L1 -1658 4488 4375 222 246 0 0 chr4 138013063 138013124 -64315223 + (CATA)n Simple_repeat Simple_repeat 4 64 0 526 309 77 27 chr4 138013418 138014019 -64314328 - L1M4 LINE L1 -2160 3986 3356 1956 187 0 11 chr4 138014366 138014735 -64313612 + MLT1A1 LTR MaLR 1 365 0 628 316 115 43 chr4 138016868 138017216 -64311131 - L2 LINE L2 -1 3312 2940 260 331 45 45 chr4 138017245 138017378 -64310969 - L2 LINE L2 -453 2861 2729 342 45 0 0 chr4 138017461 138017505 -64310842 + (TA)n Simple_repeat Simple_repeat 2 45 0 3117 124 15 17 chr4 138018048 138018524 -64309823 - MER1A DNA MER1_type -2 527 53 2196 62 28 3 chr4 138018755 138019046 -64309301 + AluY SINE Alu 1 298 -13 25 31 0 0 chr4 138019651 138019683 -64308664 + AT_rich Low_complexity Low_complexity 1 32 0 340 177 42 62 chr4 138020502 138020598 -64307749 + MLT1L LTR MaLR 183 276 -339 1917 254 91 8 chr4 138021146 138021691 -64306656 - MLT1E LTR MaLR -2 591 1 1696 195 27 40 chr4 138022200 138022570 -64305777 + MLT1A2 LTR MaLR 1 365 -9 602 311 31 51 chr4 138022861 138023118 -64305229 - MIR SINE MIR -10 252 1 191 289 106 68 chr4 138025233 138025468 -64302879 + L2 LINE L2 662 905 -2409 362 291 133 0 chr4 138025654 138025812 -64302535 + MIR SINE MIR 84 262 0 27 29 0 0 chr4 138025937 138025971 -64302376 + AT_rich Low_complexity Low_complexity 1 34 0 776 326 165 22 chr4 138027018 138027951 -64300396 - L2 LINE L2 -4 3309 2245 229 290 194 38 chr4 138027953 138028139 -64300208 - L2 LINE L2 -1274 2040 1826 25 65 0 0 chr4 138028633 138028679 -64299668 + AT_rich Low_complexity Low_complexity 1 46 0 2014 120 3 3 chr4 138029239 138029522 -64298825 - AluSc SINE Alu -18 291 9 2252 65 0 65 chr4 138030697 138031020 -64297327 + AluY SINE Alu 2 303 -8 276 235 0 37 chr4 138031029 138031110 -64297237 + MER116 DNA Mariner 1 78 -2 394 261 67 0 chr4 138031123 138031242 -64297105 + L1MEd LINE L1 42 168 -5951 613 312 86 35 chr4 138031467 138032394 -64295953 + L1MEd LINE L1 501 1526 -4784 310 211 70 0 chr4 138032670 138032741 -64295606 - MLT1G LTR MaLR -500 90 15 1520 273 34 22 chr4 138032791 138033238 -64295109 - LTR16C LTR ERVL 0 491 40 200 200 0 0 chr4 138034104 138034139 -64294208 + (TG)n Simple_repeat Simple_repeat 2 36 0 516 251 75 118 chr4 138034156 138034598 -64293749 - MLT1K LTR MaLR -22 566 144 28 0 0 0 chr4 138035337 138035365 -64292982 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 138036622 138036644 -64291703 + AT_rich Low_complexity Low_complexity 1 22 0 255 79 0 0 chr4 138037005 138037043 -64291304 + (CA)n Simple_repeat Simple_repeat 2 39 0 195 204 0 0 chr4 138037900 138037954 -64290393 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 233 321 72 102 chr4 138037967 138038232 -64290115 - L2 LINE L2 0 3272 3016 399 41 0 0 chr4 138038946 138038995 -64289352 + (TTA)n Simple_repeat Simple_repeat 3 51 0 21 0 0 0 chr4 138039065 138039086 -64289261 + AT_rich Low_complexity Low_complexity 1 21 0 4914 145 8 2 chr4 138039536 138040323 -64288024 + L1PA16 LINE L1 5367 6157 -9 2004 192 51 27 chr4 138040585 138041096 -64287251 - Charlie1b DNA MER1_type 0 523 1 180 0 0 0 chr4 138041096 138041116 -64287231 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1908 143 3 11 chr4 138041125 138041412 -64286935 - AluJo SINE Alu -24 288 4 2969 264 143 28 chr4 138043247 138043845 -64284502 + L2 LINE L2 859 1387 -1927 703 163 0 0 chr4 138043845 138043968 -64284379 - L1MA9 LINE L1 -7 6305 6183 2969 264 143 28 chr4 138043968 138044617 -64283730 + L2 LINE L2 1387 2250 -1064 10811 53 5 0 chr4 138046691 138048084 -64280263 + L1P LINE L1 1741 3140 -3006 8042 33 5 22 chr4 138048227 138049270 -64279077 + L1P LINE L1 4321 5345 -801 3872 195 42 32 chr4 138049408 138050346 -64278001 - L1MD1 LINE L1 -42 6200 5254 1881 179 8 35 chr4 138050348 138050723 -64277624 - MLT1A1 LTR MaLR 0 365 1 1195 246 66 112 chr4 138050919 138051704 -64276643 + HAL1 LINE L1 1649 2397 -110 23 54 0 0 chr4 138052168 138052205 -64276142 + AT_rich Low_complexity Low_complexity 1 37 0 1795 161 0 32 chr4 138052843 138053154 -64275193 + AluJo SINE Alu 9 309 -3 228 196 98 11 chr4 138053938 138054030 -64274317 - L1ME4a LINE L1 -4 6117 6018 1976 170 9 0 chr4 138054217 138054543 -64273804 - Tigger1 DNA MER2_type -1867 551 223 2112 167 63 23 chr4 138054543 138054898 -64273449 + MSTB LTR MaLR 1 375 -51 2200 106 86 14 chr4 138054898 138055248 -64273099 - THE1C LTR MaLR 0 375 1 2112 167 63 23 chr4 138055248 138055288 -64273059 + MSTB LTR MaLR 375 412 -14 1107 183 39 4 chr4 138055289 138055519 -64272828 - Tigger1 DNA MER2_type -2180 238 1 21 0 0 0 chr4 138057345 138057366 -64270981 + AT_rich Low_complexity Low_complexity 1 21 0 16193 58 15 3 chr4 138059151 138061311 -64267036 - L1P LINE L1 -1683 4463 2277 962 149 19 0 chr4 138061492 138061646 -64266701 + AluSg/x SINE Alu 141 297 -15 199 373 49 14 chr4 138061691 138061833 -64266514 + MIR3 SINE MIR 45 191 -17 760 256 74 31 chr4 138061938 138062262 -64266085 - MER46C DNA MER2_type 0 338 1 360 135 81 0 chr4 138062489 138062563 -64265784 + MADE1 DNA Mariner 1 80 0 22 35 0 0 chr4 138063492 138063521 -64264826 + AT_rich Low_complexity Low_complexity 1 29 0 692 264 37 9 chr4 138064802 138065018 -64263329 - L1ME4a LINE L1 -295 5826 5605 446 308 83 6 chr4 138065226 138065551 -64262796 - L1ME4a LINE L1 -188 5933 5584 641 283 71 48 chr4 138065950 138066261 -64262086 - L2 LINE L2 -1 3312 2995 1141 241 32 47 chr4 138066280 138066683 -64261664 + MLT2C1 LTR ERVL 1 397 0 711 230 36 50 chr4 138066847 138066918 -64261429 + L1M4 LINE L1 2555 2626 -3520 2530 115 52 12 chr4 138066918 138067326 -64261021 - MSTA LTR MaLR 0 428 5 711 230 36 50 chr4 138067326 138067532 -64260815 + L1M4 LINE L1 2626 2828 -3318 2152 105 0 4 chr4 138067535 138067812 -64260535 + AluSc SINE Alu 1 276 -33 10387 153 18 9 chr4 138067918 138069688 -64258659 + Tigger1 DNA MER2_type 633 2418 0 215 157 20 0 chr4 138069947 138069998 -64258349 + (TA)n Simple_repeat Simple_repeat 2 53 0 370 261 52 17 chr4 138070956 138071071 -64257276 - MIR SINE MIR -1 261 143 1976 129 0 10 chr4 138071151 138071446 -64256901 - AluSc SINE Alu -9 300 9 16712 76 2 0 chr4 138071719 138073883 -64254464 - L1P LINE L1 -3974 2172 5 334 285 97 11 chr4 138074343 138074529 -64253818 - L1ME4a LINE L1 -524 5638 5437 458 281 40 66 chr4 138074565 138074793 -64253554 + MIR SINE MIR 41 262 0 251 27 0 27 chr4 138074877 138074914 -64253433 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 14791 34 1 0 chr4 138074925 138077463 -64250884 - L1PA3 LINE L1 -11 6144 3601 9077 36 1 1 chr4 138077563 138078688 -64249659 - L1P LINE L1 -1984 4162 3038 25 0 0 0 chr4 138078864 138078889 -64249458 + AT_rich Low_complexity Low_complexity 1 25 0 325 314 92 41 chr4 138079079 138079350 -64248997 + L3 LINE CR1 686 970 -607 1495 99 8 2 chr4 138080143 138080377 -64247970 + L1P4 LINE L1 5608 5845 -276 350 280 102 44 chr4 138080479 138080754 -64247593 + L1MEd LINE L1 946 1236 -4883 4697 77 61 19 chr4 138081531 138082235 -64246112 - L1PB1 LINE L1 0 6151 5418 506 250 17 0 chr4 138082681 138082801 -64245546 + MER58 DNA MER1_type 2 123 -2297 604 240 95 40 chr4 138082829 138083029 -64245318 - MIR SINE MIR -35 227 17 1177 157 29 43 chr4 138083184 138083465 -64244882 + MER58 DNA MER1_type 2144 2420 0 2087 143 48 25 chr4 138083465 138083821 -64244526 + THE1B LTR MaLR 1 364 0 218 350 192 34 chr4 138085730 138086110 -64242237 - L3 LINE CR1 -589 988 549 199 355 91 18 chr4 138086170 138086280 -64242067 - L2 LINE L2 -15 3257 3140 2207 158 45 8 chr4 138086295 138086675 -64241672 - MSTB1 LTR MaLR 0 432 39 1881 137 21 0 chr4 138086729 138087014 -64241333 + AluSx SINE Alu 1 291 -21 736 107 16 0 chr4 138087014 138087135 -64241212 + (GGAA)n Simple_repeat Simple_repeat 1 123 0 243 0 0 0 chr4 138089438 138089465 -64238882 + (A)n Simple_repeat Simple_repeat 1 27 0 1976 102 61 3 chr4 138089708 138090001 -64238346 - AluSx SINE Alu -2 310 1 258 241 73 158 chr4 138090046 138090349 -64237998 - LTR38B LTR ERV1 -324 286 10 271 220 0 28 chr4 138091015 138091124 -64237223 + GA-rich Low_complexity Low_complexity 3 108 0 286 268 107 18 chr4 138091214 138091326 -64237021 - MIR SINE MIR 0 262 141 3000 203 46 42 chr4 138092086 138092894 -64235453 - L1MA9 LINE L1 -38 6274 5464 21 57 0 0 chr4 138092958 138092993 -64235354 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 138093117 138093140 -64235207 + AT_rich Low_complexity Low_complexity 1 23 0 274 343 75 53 chr4 138093604 138093925 -64234422 - L2 LINE L2 -691 2623 2296 1093 158 5 26 chr4 138093942 138094132 -64234215 + AluSx SINE Alu 1 186 -126 725 263 150 32 chr4 138094245 138094778 -64233569 - HAL1 LINE L1 -796 1711 1116 329 286 53 0 chr4 138094815 138094948 -64233399 - HAL1 LINE L1 -1562 945 806 295 215 15 0 chr4 138095373 138095438 -64232909 + MLT1L LTR MaLR 142 207 -408 33 56 0 0 chr4 138096232 138096286 -64232061 + AT_rich Low_complexity Low_complexity 1 54 0 292 239 28 0 chr4 138096943 138097014 -64231333 + MER116 DNA Mariner 6 78 -2 25 31 0 0 chr4 138097126 138097158 -64231189 + AT_rich Low_complexity Low_complexity 1 32 0 1176 204 0 22 chr4 138097817 138098048 -64230299 - AluJo SINE Alu -17 295 70 65 14 0 0 chr4 138098097 138098169 -64230178 + AT_rich Low_complexity Low_complexity 1 72 0 21 0 0 0 chr4 138098260 138098281 -64230066 + AT_rich Low_complexity Low_complexity 1 21 0 887 165 12 0 chr4 138098332 138098496 -64229851 - L1MB7 LINE L1 -7 6177 6012 2128 117 0 3 chr4 138098975 138099266 -64229081 + AluSg SINE Alu 1 290 -20 24 0 0 0 chr4 138099269 138099293 -64229054 + AT_rich Low_complexity Low_complexity 1 24 0 487 328 110 17 chr4 138099337 138099627 -64228720 - L2 LINE L2 -113 3200 2884 2344 153 32 11 chr4 138100295 138100322 -64228025 - L1P4 LINE L1 -674 5491 5466 1982 130 0 7 chr4 138100322 138100632 -64227715 + AluSx SINE Alu 1 308 0 2344 153 32 11 chr4 138100632 138101234 -64227113 - L1PA15 LINE L1 -699 5466 4850 4201 125 25 0 chr4 138101234 138101873 -64226474 + L1PA15 LINE L1 5487 6152 -13 546 200 0 144 chr4 138102107 138102302 -64226045 - MER69A DNA AcHobo -10 167 1 198 0 0 0 chr4 138102335 138102357 -64225990 + (T)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr4 138103182 138103204 -64225143 + (TTTTTG)n Simple_repeat Simple_repeat 4 25 0 422 18 18 0 chr4 138104167 138104222 -64224125 + (CA)n Simple_repeat Simple_repeat 2 57 0 11789 59 82 5 chr4 138104602 138106191 -64222156 + L1P LINE L1 2 1712 -4434 338 342 52 7 chr4 138107316 138107471 -64220876 - MIR3 SINE MIR -13 195 34 482 286 35 18 chr4 138108556 138108727 -64219620 - LTR16C LTR ERVL -2 489 316 194 367 7 60 chr4 138109553 138109703 -64218644 - MIR SINE MIR -101 161 20 4533 151 37 28 chr4 138109705 138110566 -64217781 - L1PA16 LINE L1 -2 6164 5298 1233 187 116 0 chr4 138110707 138111049 -64217298 - L1PA16 LINE L1 -814 5340 4959 * 1317 208 16 19 chr4 138111045 138111358 -64216989 + L1PA16 LINE L1 4655 4966 -1180 513 273 96 24 chr4 138112637 138112886 -64215461 - MLT1L LTR MaLR -1 614 348 1176 331 60 22 chr4 138114825 138114949 -64213398 - MER83C-int LTR ERV1 -3063 1891 1773 243 0 0 0 chr4 138114949 138114976 -64213371 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1176 331 60 22 chr4 138114976 138115673 -64212674 - MER83C-int LTR ERV1 -3181 1773 1039 4690 240 34 9 chr4 138115812 138116942 -64211405 - MER83C-int LTR ERV1 -3875 1005 4 727 220 67 70 chr4 138116947 138117162 -64211185 - MER83C LTR ERV1 -12 361 146 2685 133 22 20 chr4 138117162 138117619 -64210728 + LTR22A LTR ERVK 1 458 0 727 220 67 70 chr4 138117619 138117717 -64210630 - MER83C LTR ERV1 -227 146 49 2287 155 18 30 chr4 138119094 138119493 -64208854 + MSTB LTR MaLR 9 402 -24 188 366 43 11 chr4 138120303 138120396 -64207951 + L3 LINE CR1 1477 1572 -5 924 253 56 16 chr4 138120579 138120828 -64207519 - MLT1F1 LTR MaLR -1 566 308 213 39 0 0 chr4 138121269 138121295 -64207052 + (CA)n Simple_repeat Simple_repeat 2 27 0 2618 106 20 0 chr4 138122785 138123180 -64205167 - L1PA13 LINE L1 -4 6159 5757 1536 192 80 3 chr4 138124726 138125065 -64203282 - MLT1A1 LTR MaLR 0 365 1 182 238 63 63 chr4 138125333 138125396 -64202951 - MER5A DNA MER1_type -89 100 38 309 89 0 0 chr4 138125703 138125862 -64202485 + (CA)n Simple_repeat Simple_repeat 1 204 0 309 89 0 0 chr4 138125862 138125907 -64202440 + (CA)n Simple_repeat Simple_repeat 2 46 0 488 268 16 8 chr4 138126997 138127120 -64201227 - MER5A DNA MER1_type 0 189 66 228 136 55 45 chr4 138127177 138127287 -64201060 + (TATAA)n Simple_repeat Simple_repeat 5 115 0 23 33 0 0 chr4 138127531 138127561 -64200786 + AT_rich Low_complexity Low_complexity 1 30 0 241 65 0 0 chr4 138127574 138127605 -64200742 + L1PA5 LINE L1 6027 6057 -97 269 95 24 0 chr4 138129679 138129721 -64198626 - MER84-int LTR ERV1 -2592 2362 2320 3038 203 37 25 chr4 138131309 138131654 -64196693 - MER67C LTR ERV1 -6 704 365 462 36 0 0 chr4 138131654 138131710 -64196637 + (CA)n Simple_repeat Simple_repeat 2 57 0 3038 203 37 25 chr4 138131710 138132059 -64196288 - MER67C LTR ERV1 -345 365 1 2942 161 32 75 chr4 138132219 138132941 -64195406 - LTR8 LTR ERV1 0 691 1 1317 122 63 28 chr4 138133424 138133679 -64194668 - Tigger7 DNA MER2_type -8 2479 2216 * 3846 184 19 40 chr4 138133677 138134047 -64194300 - Tigger7 DNA MER2_type -1719 768 392 2108 127 3 19 chr4 138134047 138134361 -64193986 + AluSx SINE Alu 4 312 0 3846 184 19 40 chr4 138134361 138134774 -64193573 - Tigger7 DNA MER2_type -2095 392 1 21 36 0 0 chr4 138135061 138135089 -64193258 + AT_rich Low_complexity Low_complexity 1 28 0 230 175 0 18 chr4 138137938 138137995 -64190352 + L1MD2 LINE L1 6302 6357 -2 44 56 0 0 chr4 138138411 138138483 -64189864 + AT_rich Low_complexity Low_complexity 1 72 0 2278 80 0 14 chr4 138139481 138139794 -64188553 - AluSg SINE Alu 0 309 1 246 293 64 17 chr4 138140016 138140172 -64188175 + MIR SINE MIR 15 250 -12 314 245 155 19 chr4 138142306 138142461 -64185886 - MER104 DNA MER2_type -2 178 3 821 259 68 88 chr4 138142658 138143184 -64185163 - MLT1F LTR MaLR -26 516 1 506 123 0 0 chr4 138143376 138143449 -64184898 - AluSq SINE Alu -39 274 202 1275 40 0 7 chr4 138143485 138143636 -64184711 - AluSq SINE Alu -117 196 47 438 287 70 0 chr4 138143903 138144046 -64184301 - MIR SINE MIR -1 261 109 351 0 0 0 chr4 138144089 138144128 -64184219 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1939 137 14 0 chr4 138144130 138144408 -64183939 - AluSx SINE Alu -30 282 1 202 266 18 28 chr4 138144926 138145035 -64183312 + T-rich Low_complexity Low_complexity 5 112 0 463 214 34 0 chr4 138146160 138146249 -64182098 + MER58B DNA MER1_type 1 92 -249 1082 212 11 45 chr4 138146364 138146633 -64181714 + MER58B DNA MER1_type 79 338 -3 1655 199 89 5 chr4 138146818 138146850 -64181497 - MLT2D LTR ERVL -1 413 385 601 24 12 24 chr4 138146850 138146934 -64181413 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 1655 199 89 5 chr4 138146934 138147282 -64181065 - MLT2D LTR ERVL -29 385 1 1823 205 10 35 chr4 138147639 138148039 -64180308 - MLT1B LTR MaLR 0 390 1 903 248 218 18 chr4 138148142 138148541 -64179806 - L1ME3A LINE L1 -12 6158 5680 545 103 0 0 chr4 138148644 138148722 -64179625 - MADE1 DNA Mariner 0 80 3 201 224 0 61 chr4 138148765 138148814 -64179533 - L2 LINE L2 -36 3236 3191 605 239 78 33 chr4 138148859 138149039 -64179308 + MER5A DNA MER1_type 1 188 -1 752 321 54 0 chr4 138149470 138149710 -64178637 + MIR SINE MIR 1 253 -9 180 0 0 0 chr4 138151766 138151786 -64176561 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 205 343 157 19 chr4 138152359 138152467 -64175880 + MIR SINE MIR 14 136 -126 420 209 76 0 chr4 138152757 138152862 -64175485 + MER94 DNA DNA 3 115 -19 626 326 161 33 chr4 138153540 138153857 -64174490 + L2 LINE L2 2084 2359 -913 2291 124 31 17 chr4 138153857 138154212 -64174135 - THE1B LTR MaLR 0 364 5 626 326 161 33 chr4 138154212 138154938 -64173409 + L2 LINE L2 2359 3272 0 28 48 0 0 chr4 138154960 138155002 -64173345 + AT_rich Low_complexity Low_complexity 1 42 0 349 261 116 65 chr4 138156870 138157242 -64171105 + HAL1b LINE L1 490 880 -468 1567 144 25 0 chr4 138157308 138157586 -64170761 - L1MA9 LINE L1 -2 6310 6026 468 263 66 66 chr4 138158030 138158258 -64170089 - MIR SINE MIR -17 245 18 31 26 0 0 chr4 138158382 138158420 -64169927 + AT_rich Low_complexity Low_complexity 1 38 0 329 310 33 52 chr4 138158671 138158902 -64169445 - MIR SINE MIR -11 251 22 775 130 30 65 chr4 138159251 138159420 -64168927 - L1MA4 LINE L1 0 6300 6138 1377 148 15 57 chr4 138159429 138159692 -64168655 - AluJo SINE Alu -20 292 41 1062 166 0 0 chr4 138159699 138159880 -64168467 - L1MA4 LINE L1 -140 6160 5980 447 120 13 0 chr4 138162471 138162546 -64165801 - MER116 DNA Mariner 0 80 5 311 350 80 67 chr4 138163648 138164159 -64164188 - L2 LINE L2 -339 2975 2458 344 260 14 0 chr4 138164621 138164694 -64163653 - tRNA-Glu-GAG tRNA tRNA 0 75 2 2624 229 69 14 chr4 138164723 138165706 -64162641 + L1MCb LINE L1 391 1420 -4850 3366 184 34 30 chr4 138165706 138166509 -64161838 + L1MC2 LINE L1 5528 6333 -11 282 140 35 0 chr4 138166523 138166580 -64161767 - L1PA16 LINE L1 -9 6157 6099 7708 148 20 1 chr4 138166689 138167964 -64160383 + HSMAR2 DNA Mariner 3 1301 -1 995 61 0 8 chr4 138168384 138168515 -64159832 - L1PA3 LINE L1 0 6155 6026 436 287 37 0 chr4 138170056 138170164 -64158183 + L2 LINE L2 3190 3301 -12 249 406 50 22 chr4 138171775 138171955 -64156392 + L2 LINE L2 3073 3257 -15 2032 167 25 55 chr4 138172628 138172942 -64155405 + L1MA9 LINE L1 5820 6117 -195 2268 68 6 32 chr4 138172942 138173253 -64155094 + AluY SINE Alu 1 303 -8 2032 167 25 55 chr4 138173253 138173412 -64154935 + L1MA9 LINE L1 6117 6279 -33 198 0 0 0 chr4 138173958 138173980 -64154367 + (TC)n Simple_repeat Simple_repeat 2 23 0 493 325 55 41 chr4 138174095 138174440 -64153907 + L1ME4a LINE L1 5575 5924 -197 180 0 0 0 chr4 138174474 138174494 -64153853 + (CA)n Simple_repeat Simple_repeat 1 20 0 508 261 59 99 chr4 138174553 138174732 -64153615 + MIR SINE MIR 2 168 -94 2114 97 3 7 chr4 138174732 138175020 -64153327 + AluSc SINE Alu 1 287 -22 508 261 59 99 chr4 138175020 138175112 -64153235 + MIR SINE MIR 168 262 0 18233 45 0 0 chr4 138175357 138178402 -64149945 + L1PA4 LINE L1 3111 6155 0 219 313 261 0 chr4 138179201 138179316 -64149031 - MIR SINE MIR -116 146 2 249 323 51 51 chr4 138180065 138180260 -64148087 + MIR SINE MIR 66 260 -2 2154 170 36 32 chr4 138180810 138181358 -64146989 - MLT2A2 LTR ERVL 0 554 1 392 277 85 101 chr4 138181380 138181827 -64146520 + L1ME4a LINE L1 5682 6121 0 21 0 0 0 chr4 138181828 138181849 -64146498 + AT_rich Low_complexity Low_complexity 1 21 0 670 218 23 40 chr4 138181883 138182057 -64146290 + AluJo SINE Alu 125 295 -17 2368 92 3 0 chr4 138182312 138182618 -64145729 + AluSq SINE Alu 1 307 -6 530 153 9 0 chr4 138183786 138183897 -64144450 + (TAGA)n Simple_repeat Simple_repeat 3 114 0 279 140 0 0 chr4 138184291 138184341 -64144006 + (TA)n Simple_repeat Simple_repeat 1 50 0 263 91 0 23 chr4 138185470 138185514 -64142833 + (TAA)n Simple_repeat Simple_repeat 2 44 0 198 0 0 0 chr4 138187014 138187036 -64141311 + (A)n Simple_repeat Simple_repeat 1 22 0 295 256 12 35 chr4 138187167 138187253 -64141094 + MIR SINE MIR 28 111 -151 218 264 0 19 chr4 138187644 138187697 -64140650 - L2 LINE L2 -1 3312 3261 185 403 23 23 chr4 138188318 138188447 -64139900 - L2 LINE L2 -2927 387 259 419 173 25 0 chr4 138188640 138188721 -64139626 + HY5 scRNA scRNA 1 83 -1 23 33 0 0 chr4 138188921 138188951 -64139396 + AT_rich Low_complexity Low_complexity 1 30 0 6716 28 2 0 chr4 138189210 138190007 -64138340 - L1PA3 LINE L1 -1 6154 5356 249 207 0 0 chr4 138191934 138191992 -64136355 + L1ME1 LINE L1 2429 2486 -3660 1975 263 34 44 chr4 138192069 138192612 -64135735 + L1ME1 LINE L1 4761 5308 -858 3741 104 4 0 chr4 138192612 138193152 -64135195 - L1PA13 LINE L1 -19 6144 5603 1975 263 34 44 chr4 138193152 138193991 -64134356 + L1ME1 LINE L1 5308 6128 -38 2059 46 0 4 chr4 138196873 138197158 -64131189 - L1PA4 LINE L1 0 6155 5884 24 0 0 0 chr4 138197264 138197288 -64131059 + AT_rich Low_complexity Low_complexity 1 24 0 463 323 15 36 chr4 138198808 138199003 -64129344 + L2 LINE L2 2522 2712 -602 291 350 155 0 chr4 138199374 138199471 -64128876 + L2 LINE L2 3180 3291 -22 27 49 0 0 chr4 138201786 138201827 -64126520 + AT_rich Low_complexity Low_complexity 1 41 0 319 318 61 0 chr4 138202497 138202629 -64125718 - L1ME3A LINE L1 -242 5928 5789 508 286 82 0 chr4 138202941 138203088 -64125259 + MIR SINE MIR 56 214 -48 201 175 0 0 chr4 138203105 138203145 -64125202 + (TTA)n Simple_repeat Simple_repeat 2 41 0 1395 175 45 18 chr4 138203352 138203638 -64124709 - AluJo SINE Alu -18 294 1 2858 13 0 0 chr4 138204377 138204693 -64123654 + AluYb8 SINE Alu 1 316 -2 24 32 0 0 chr4 138204824 138204855 -64123492 + AT_rich Low_complexity Low_complexity 1 31 0 318 231 83 0 chr4 138204942 138205063 -64123284 + MER69 DNA AcHobo 2381 2511 -15 2135 139 29 77 chr4 138205435 138205888 -64122459 - Tigger2a DNA MER2_type -1 433 3 400 308 46 49 chr4 138206500 138206763 -64121584 - MLT1I LTR MaLR -123 286 51 380 233 115 8 chr4 138206888 138207015 -64121332 + MIR SINE MIR 17 165 -43 279 0 0 0 chr4 138208250 138208281 -64120066 + (GA)n Simple_repeat Simple_repeat 1 31 0 997 310 69 25 chr4 138209857 138210380 -64117967 - MLT1H1 LTR MaLR -9 546 1 327 209 48 102 chr4 138211924 138212111 -64116236 + Charlie7 DNA MER1_type 2435 2611 -1 260 308 58 8 chr4 138212285 138212405 -64115942 + MIR SINE MIR 131 256 -6 232 247 39 26 chr4 138214143 138214220 -64114127 + MIR SINE MIR 146 223 -39 422 326 126 19 chr4 138215026 138215399 -64112948 - L2 LINE L2 -1146 2168 1744 1928 125 14 0 chr4 138215399 138215688 -64112659 + AluSx SINE Alu 18 310 -2 422 326 126 19 chr4 138215688 138215734 -64112613 - L2 LINE L2 -1570 1744 1704 312 176 162 0 chr4 138215744 138215812 -64112535 + L2 LINE L2 3199 3277 -36 401 359 145 11 chr4 138215977 138216239 -64112108 + L2 LINE L2 2974 3270 -2 27 29 0 0 chr4 138217224 138217258 -64111089 + AT_rich Low_complexity Low_complexity 1 34 0 2545 220 92 29 chr4 138217689 138218371 -64109976 + MER21B LTR ERV1 32 756 -107 836 154 6 26 chr4 138220549 138220705 -64107642 + L1MB4 LINE L1 5987 6139 -41 432 0 0 0 chr4 138220765 138220813 -64107534 + (CA)n Simple_repeat Simple_repeat 1 48 0 695 172 8 8 chr4 138220863 138220985 -64107362 + AluJo/FLAM SINE Alu 1 122 -190 811 176 14 0 chr4 138220988 138221130 -64107217 - FRAM SINE Alu -17 159 16 484 366 64 0 chr4 138221953 138222155 -64106192 + MIR SINE MIR 47 261 -1 839 256 5 5 chr4 138222878 138223081 -64105266 - MER3 DNA MER1_type -6 203 1 229 308 36 67 chr4 138224430 138224625 -64103722 + L2 LINE L2 2664 2852 -462 433 307 186 5 chr4 138224754 138224969 -64103378 + L2 LINE L2 3047 3300 -13 216 0 0 0 chr4 138224969 138224993 -64103354 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 231 384 51 42 chr4 138225224 138225461 -64102886 + L2 LINE L2 2805 3043 -229 585 311 31 35 chr4 138226423 138226680 -64101667 + MER88 LTR ERVL 5 260 -204 1764 159 35 6 chr4 138327001 138327346 -64001001 + L1MA9 LINE L1 5494 5848 -464 704 303 65 11 chr4 138327470 138327747 -64000600 - L2 LINE L2 -578 2736 2445 819 230 88 8 chr4 138327749 138327988 -64000359 - MER76 LTR ERV -6 682 425 * 896 243 77 4 chr4 138327986 138328221 -64000126 - MER76 LTR ERV -433 255 4 6241 123 103 128 chr4 138328719 138330462 -63997885 - pTR5 LTR ERV1 0 2438 741 3854 161 50 27 chr4 138330884 138331250 -63997097 + Tigger3(Golem) DNA MER2_type 2160 2516 -512 2209 69 0 0 chr4 138331250 138331512 -63996835 + AluY SINE Alu 39 300 -11 3854 161 50 27 chr4 138331512 138331994 -63996353 + Tigger3(Golem) DNA MER2_type 2516 3027 -1 1768 146 53 8 chr4 138332001 138332358 -63995989 + L1MA8 LINE L1 5919 6291 0 2584 158 5 6 chr4 138332540 138333218 -63995129 - L1P4 LINE L1 -477 5688 5010 1265 218 13 0 chr4 138333201 138333517 -63994830 - L1P LINE L1 -934 5212 4893 * 1890 196 38 9 chr4 138333517 138333991 -63994356 + LTR22 LTR ERVK 1 458 0 337 205 0 13 chr4 138334118 138334196 -63994151 - LTR54 LTR ERV1 -2 508 432 630 259 33 26 chr4 138334245 138334533 -63993814 - MER57B LTR ERV1 -132 283 1 21 0 0 0 chr4 138335819 138335840 -63992507 + AT_rich Low_complexity Low_complexity 1 21 0 206 293 17 0 chr4 138336235 138336293 -63992054 - MIR3 SINE MIR -24 184 126 21 57 0 0 chr4 138337087 138337122 -63991225 + AT_rich Low_complexity Low_complexity 1 35 0 1966 97 3 24 chr4 138337212 138337501 -63990846 + AluSg SINE Alu 1 283 -27 302 67 22 0 chr4 138337501 138337546 -63990801 + (TA)n Simple_repeat Simple_repeat 2 47 0 415 339 91 14 chr4 138338739 138338960 -63989387 - MIR SINE MIR -14 248 11 22 0 0 0 chr4 138338996 138339018 -63989329 + AT_rich Low_complexity Low_complexity 1 22 0 673 316 102 24 chr4 138339404 138339739 -63988608 - L2 LINE L2 -55 3258 2898 2136 104 3 28 chr4 138339748 138340066 -63988281 + AluSg SINE Alu 1 310 0 1690 167 88 13 chr4 138340073 138340450 -63987897 + L1MA6 LINE L1 5845 6249 -51 4384 121 100 111 chr4 138340453 138341873 -63986474 - pTR5 LTR ERV1 0 2438 743 275 151 0 0 chr4 138341873 138341926 -63986421 + L1MA7 LINE L1 6237 6289 -2 26 0 0 0 chr4 138341928 138341954 -63986393 + AT_rich Low_complexity Low_complexity 1 26 0 367 255 10 10 chr4 138342013 138342111 -63986236 - MLT1C LTR MaLR -16 451 354 286 348 77 0 chr4 138342358 138342513 -63985834 + MIR SINE MIR 53 219 -43 207 69 0 0 chr4 138342633 138342662 -63985685 + (T)n Simple_repeat Simple_repeat 1 29 0 19409 21 0 0 chr4 138342669 138345736 -63982611 - L1HS LINE L1 -1 6154 3088 7924 25 1 0 chr4 138345736 138346686 -63981661 + L1HS LINE L1 2141 3091 -3055 2180 243 58 92 chr4 138346806 138347643 -63980704 - MER21B LTR ERV1 -54 809 1 1950 162 32 0 chr4 138347760 138348105 -63980242 + MER47A DNA MER2_type 11 366 0 21 0 0 0 chr4 138348712 138348733 -63979614 + AT_rich Low_complexity Low_complexity 1 21 0 235 284 23 45 chr4 138349382 138349470 -63978877 + MIR3 SINE MIR 108 193 -15 234 0 0 0 chr4 138352560 138352586 -63975761 + (TA)n Simple_repeat Simple_repeat 2 27 0 39 60 0 0 chr4 138352646 138352713 -63975634 + AT_rich Low_complexity Low_complexity 1 67 0 1383 208 3 21 chr4 138353627 138353911 -63974436 - AluJb SINE Alu -33 279 1 1576 182 24 38 chr4 138354061 138354401 -63973946 + MER1B DNA MER1_type 3 337 0 344 251 163 64 chr4 138354402 138354605 -63973742 - MLT1C LTR MaLR -128 339 133 242 246 16 16 chr4 138354633 138354694 -63973653 - MLT1C LTR MaLR -444 61 1 637 265 164 12 chr4 138354694 138355018 -63973329 - L2 LINE L2 -423 2891 2519 411 266 42 93 chr4 138355492 138355729 -63972618 + Charlie8 DNA MER1_type 9 233 -2184 544 286 66 5 chr4 138355764 138355977 -63972370 - HAL1 LINE L1 -587 1920 1695 1130 275 61 101 chr4 138356034 138356603 -63971744 - MER77 LTR ERV1 -27 578 66 1274 308 79 62 chr4 138356802 138357067 -63971280 - HAL1 LINE L1 -976 1531 1272 2151 137 0 0 chr4 138357067 138357373 -63970974 - AluSx SINE Alu -4 308 3 1274 308 79 62 chr4 138357373 138358106 -63970241 - HAL1 LINE L1 -1235 1272 498 2039 126 3 0 chr4 138358106 138358392 -63969955 + AluSx SINE Alu 1 287 -25 1274 308 79 62 chr4 138358392 138358848 -63969499 - HAL1 LINE L1 -2009 498 51 249 326 53 83 chr4 138359159 138359291 -63969056 - L2 LINE L2 0 3272 3145 441 370 6 6 chr4 138359675 138359848 -63968499 + MIR SINE MIR 48 220 -42 508 263 8 8 chr4 138359865 138359998 -63968349 - LTR33A LTR ERVL -27 496 364 317 279 35 102 chr4 138360072 138360269 -63968078 - LTR33A LTR ERVL -333 190 7 288 0 0 0 chr4 138360469 138360501 -63967846 + (TG)n Simple_repeat Simple_repeat 2 33 0 1038 152 38 11 chr4 138360659 138360893 -63967454 - L1MA5 LINE L1 -14 6289 6048 4267 48 11 2 chr4 138360897 138361435 -63966912 - L1PA4 LINE L1 -3 6152 5610 374 237 0 0 chr4 138361535 138361611 -63966736 + MER2 DNA MER2_type 267 342 -3 333 47 0 0 chr4 138361615 138361658 -63966689 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 203 240 0 60 chr4 138361708 138361758 -63966589 - MIR SINE MIR -138 124 78 419 227 29 34 chr4 138361799 138361953 -63966394 - MLT1G1 LTR MaLR 0 595 407 608 282 81 12 chr4 138361954 138362213 -63966134 + LTR16A1 LTR ERVL 181 457 0 729 219 46 51 chr4 138363727 138363923 -63964424 + MER20 DNA MER1_type 25 219 0 23 54 0 0 chr4 138364535 138364572 -63963775 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr4 138365723 138365756 -63962591 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4 138366406 138366434 -63961913 + AT_rich Low_complexity Low_complexity 1 28 0 1236 148 68 18 chr4 138367904 138368182 -63960165 - MER33 DNA MER1_type 0 324 33 21 0 0 0 chr4 138368761 138368782 -63959565 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 138369319 138369349 -63958998 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr4 138370358 138370384 -63957963 + AT_rich Low_complexity Low_complexity 1 26 0 2177 113 0 0 chr4 138370384 138370675 -63957672 - AluSx SINE Alu -19 293 3 327 250 12 24 chr4 138370698 138370782 -63957565 - MIR SINE MIR 0 262 180 2741 176 16 42 chr4 138370807 138371501 -63956846 - L1MA4A LINE L1 -23 6280 5544 276 150 0 0 chr4 138371501 138371559 -63956788 + FLAM_A SINE Alu 85 133 0 17048 192 31 9 chr4 138371560 138372166 -63956181 - L1M1 LINE L1 -4269 3296 2705 2124 106 27 3 chr4 138372166 138372459 -63955888 - AluSq SINE Alu -13 300 1 17048 192 31 9 chr4 138372459 138375056 -63953291 - L1M1 LINE L1 -4860 2705 22 193 343 210 0 chr4 138375087 138375230 -63953117 + L2 LINE L2 2299 2471 -843 1835 208 77 25 chr4 138375756 138376236 -63952111 - MLT1D LTR MaLR 0 505 1 207 267 0 17 chr4 138376320 138376380 -63951967 + L2 LINE L2 2983 3041 -231 2116 111 0 20 chr4 138376915 138377213 -63951134 + AluSx SINE Alu 1 292 -20 2791 185 37 66 chr4 138379197 138379879 -63948468 - LTR8 LTR ERV1 0 691 30 471 73 29 0 chr4 138379982 138380050 -63948297 - LTR8A LTR ERV1 -657 70 1 600 316 47 5 chr4 138380216 138380432 -63947915 + MIR SINE MIR 37 258 -4 269 343 46 19 chr4 138380453 138380561 -63947786 + MIR3 SINE MIR 57 167 -41 564 279 96 89 chr4 138381000 138381459 -63946888 + L2 LINE L2 2852 3313 0 575 197 98 0 chr4 138382170 138382292 -63946055 - MER3 DNA MER1_type -23 186 53 180 229 0 114 chr4 138382485 138382555 -63945792 + L2 LINE L2 3251 3312 -1 258 32 0 0 chr4 138382617 138382648 -63945699 + (CA)n Simple_repeat Simple_repeat 2 32 0 1270 217 195 7 chr4 138382703 138383118 -63945229 + LTR54B LTR ERV1 1 493 -5 260 363 0 22 chr4 138383494 138383585 -63944762 + L2 LINE L2 3122 3210 -62 284 302 183 16 chr4 138383834 138383960 -63944387 + MIR SINE MIR 2 148 -114 215 338 49 14 chr4 138384944 138385086 -63943261 - L2 LINE L2 -2 3311 3165 1122 219 14 4 chr4 138385220 138385499 -63942848 - L1 LINE L1 -1592 4554 4273 * 2935 164 2 6 chr4 138385497 138385986 -63942361 + L1PA15 LINE L1 5658 6144 -21 28 29 0 0 chr4 138386353 138386388 -63941959 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 138386523 138386546 -63941801 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr4 138386880 138386913 -63941434 + AT_rich Low_complexity Low_complexity 1 33 0 7646 28 0 0 chr4 138386926 138388189 -63940158 - L1PA2 LINE L1 0 6155 4893 16344 34 1 0 chr4 138388189 138390542 -63937805 + L1PA2 LINE L1 2555 4909 -1237 351 319 43 29 chr4 138392332 138392539 -63935808 - MIR SINE MIR 0 262 53 353 323 63 0 chr4 138393080 138393207 -63935140 + MIR SINE MIR 17 151 -57 2196 164 10 99 chr4 138394279 138394723 -63933624 - MER65C LTR ERV1 0 461 66 1937 136 0 23 chr4 138394723 138395025 -63933322 - AluSx SINE Alu -17 295 1 2196 164 10 99 chr4 138395025 138395086 -63933261 - MER65C LTR ERV1 -395 66 1 188 250 50 50 chr4 138397000 138397080 -63931267 - L2 LINE L2 -5 3267 3188 528 324 103 32 chr4 138397118 138397495 -63930852 + MLT1I LTR MaLR 6 409 0 277 165 87 0 chr4 138397552 138397655 -63930692 + (TA)n Simple_repeat Simple_repeat 2 113 0 195 305 49 61 chr4 138398359 138398441 -63929906 - MER5B DNA MER1_type -53 125 45 1645 168 199 36 chr4 138398591 138398630 -63929717 - MLT2B1 LTR ERVL 0 520 489 375 23 0 0 chr4 138398630 138398674 -63929673 + (TG)n Simple_repeat Simple_repeat 1 44 0 1645 168 199 36 chr4 138398674 138399081 -63929266 - MLT2B1 LTR ERVL -31 489 1 200 116 47 23 chr4 138399858 138399901 -63928446 + A-rich Low_complexity Low_complexity 2 45 0 648 240 68 0 chr4 138403449 138403595 -63924752 - MER45A DNA AcHobo -22 156 1 1735 178 0 3 chr4 138403801 138404093 -63924254 - AluJb SINE Alu -21 291 1 2039 126 0 0 chr4 138405029 138405354 -63922993 + AluY SINE Alu 1 325 0 24 32 0 0 chr4 138406328 138406359 -63921988 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 138408170 138408194 -63920153 + AT_rich Low_complexity Low_complexity 1 24 0 260 367 65 65 chr4 138410287 138410535 -63917812 - L2 LINE L2 -47 3225 2978 301 304 0 0 chr4 138410879 138410948 -63917399 - MER5B DNA MER1_type -27 151 83 202 143 16 79 chr4 138412161 138412224 -63916123 + T-rich Low_complexity Low_complexity 1 59 0 233 341 0 0 chr4 138412307 138412389 -63915958 + L2 LINE L2 1879 1960 -1354 593 127 45 0 chr4 138412389 138412499 -63915848 - L1M1 LINE L1 -860 5443 5329 185 389 17 17 chr4 138412500 138412675 -63915672 + L2 LINE L2 2467 2641 -673 42352 56 3 2 chr4 138412809 138418327 -63910020 - L1P2 LINE L1 -630 5525 3 339 202 3 11 chr4 138418329 138418423 -63909924 - L1MA5 LINE L1 -254 6046 5951 201 309 0 18 chr4 138418641 138418696 -63909651 + L2 LINE L2 3215 3268 -4 1893 115 43 0 chr4 138419215 138419493 -63908854 - AluSp SINE Alu -23 290 1 24 53 0 0 chr4 138420322 138420360 -63907987 + AT_rich Low_complexity Low_complexity 1 38 0 195 294 65 43 chr4 138421265 138421357 -63906990 - L3 LINE CR1 -813 764 671 30 45 0 0 chr4 138421416 138421460 -63906887 + AT_rich Low_complexity Low_complexity 1 44 0 222 37 0 0 chr4 138421762 138421789 -63906558 + (TATG)n Simple_repeat Simple_repeat 2 28 0 28 0 0 0 chr4 138421862 138421890 -63906457 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 138422034 138422058 -63906289 + AT_rich Low_complexity Low_complexity 1 24 0 7829 81 5 14 chr4 138422543 138423624 -63904723 + MER11C LTR ERVK 1 1071 0 1274 176 11 75 chr4 138424678 138424957 -63903390 - AluJb SINE Alu -17 295 35 215 306 92 10 chr4 138425299 138425397 -63902950 + L3 LINE CR1 1294 1399 -178 1373 231 52 48 chr4 138425624 138426082 -63902265 + MER65C LTR ERV1 2 461 0 296 303 0 11 chr4 138428466 138428555 -63899792 + MER65C-int LTR ERV1 158 245 -4402 38 61 0 0 chr4 138428563 138428629 -63899718 + AT_rich Low_complexity Low_complexity 1 66 0 1526 151 66 79 chr4 138430868 138431076 -63897271 + THE1C LTR MaLR 3 212 -163 2231 115 0 6 chr4 138431076 138431388 -63896959 - AluY SINE Alu -1 310 1 453 19 0 0 chr4 138431395 138431449 -63896898 + (TG)n Simple_repeat Simple_repeat 1 54 0 1526 151 66 79 chr4 138431449 138431610 -63896737 + THE1C LTR MaLR 218 375 0 1965 109 3 25 chr4 138431718 138432001 -63896346 + AluSx SINE Alu 1 277 -35 243 0 0 0 chr4 138432003 138432030 -63896317 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr4 138432589 138432611 -63895736 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr4 138432901 138432937 -63895410 + AT_rich Low_complexity Low_complexity 1 36 0 989 319 68 28 chr4 138433135 138434118 -63894229 + MER65C-int LTR ERV1 4209 4871 0 1663 207 37 46 chr4 138434118 138434572 -63893775 + MER65C LTR ERV1 1 450 -11 189 107 0 0 chr4 138435269 138435297 -63893050 + (T)n Simple_repeat Simple_repeat 1 28 0 7595 20 8 1 chr4 138435298 138436948 -63891399 - L1PA3 LINE L1 0 6155 4506 1335 249 123 28 chr4 138437698 138438168 -63890179 - LTR40a LTR ERVL -2 517 3 21 0 0 0 chr4 138438194 138438215 -63890132 + AT_rich Low_complexity Low_complexity 1 21 0 322 349 118 44 chr4 138438266 138438900 -63889447 + L2 LINE L2 2464 3179 -93 432 245 64 78 chr4 138439768 138439827 -63888520 - MIR SINE MIR 0 262 204 494 16 16 0 chr4 138439827 138439890 -63888457 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 432 245 64 78 chr4 138439890 138440034 -63888313 - MIR SINE MIR -58 204 62 21 0 0 0 chr4 138441112 138441133 -63887214 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 138441594 138441616 -63886731 + AT_rich Low_complexity Low_complexity 1 22 0 3030 179 42 20 chr4 138441620 138442212 -63886135 + MER6A DNA MER2_type 1 605 0 952 304 88 30 chr4 138442264 138442728 -63885619 - L2 LINE L2 -2 3311 2821 1789 259 62 20 chr4 138442776 138443421 -63884926 - L1ME3 LINE L1 -68 6094 5423 183 224 17 35 chr4 138443671 138443729 -63884618 - L2 LINE L2 -568 2746 2690 2158 106 62 11 chr4 138445008 138445365 -63882982 - THE1C LTR MaLR 0 375 1 884 191 11 5 chr4 138445743 138445932 -63882415 - L1MC3 LINE L1 0 7785 7596 599 195 78 66 chr4 138446032 138446622 -63881725 - L1MC3 LINE L1 -336 7449 6621 303 300 56 62 chr4 138447252 138447412 -63880935 - L1ME LINE L1 -5888 182 24 33 80 0 0 chr4 138448107 138448182 -63880165 + AT_rich Low_complexity Low_complexity 1 75 0 201 280 0 0 chr4 138449042 138449092 -63879255 - L3 LINE CR1 -1 1576 1527 483 243 71 63 chr4 138450268 138450507 -63877840 + L2 LINE L2 3073 3313 0 22 0 0 0 chr4 138450510 138450532 -63877815 + AT_rich Low_complexity Low_complexity 1 22 0 264 252 16 16 chr4 138451153 138451276 -63877071 + (TA)n Simple_repeat Simple_repeat 2 124 0 1798 153 0 4 chr4 138453155 138453436 -63874911 - AluJb SINE Alu -12 300 21 326 345 27 0 chr4 138454826 138454936 -63873411 - MIR3 SINE MIR -6 202 90 329 224 0 61 chr4 138455065 138455163 -63873184 - LTR33A LTR ERVL -6 517 426 243 0 0 0 chr4 138455205 138455232 -63873115 + (A)n Simple_repeat Simple_repeat 1 27 0 4155 115 55 1 chr4 138456694 138457347 -63871000 + LTR12 LTR ERV1 1 688 0 2008 136 3 3 chr4 138457407 138457701 -63870646 - AluSq SINE Alu -10 303 10 226 176 20 0 chr4 138460255 138460306 -63868041 + (TA)n Simple_repeat Simple_repeat 2 53 0 23 33 0 0 chr4 138460405 138460435 -63867912 + AT_rich Low_complexity Low_complexity 1 30 0 3419 178 18 6 chr4 138461929 138462587 -63865760 - L1PB4 LINE L1 -3 6153 5488 2135 233 14 8 chr4 138462587 138463107 -63865240 + L1 LINE L1 4549 5071 -1075 493 110 0 0 chr4 138463111 138463184 -63865163 + L1P5 LINE L1 5418 5490 -666 1925 140 7 0 chr4 138463623 138463916 -63864431 + AluSg SINE Alu 1 295 -15 1661 178 0 7 chr4 138464165 138464469 -63863878 + AluJb SINE Alu 1 302 -10 334 320 56 0 chr4 138464660 138464785 -63863562 + MER94 DNA DNA 3 134 0 190 323 11 32 chr4 138467147 138467240 -63861107 + L2 LINE L2 3188 3278 -35 237 371 75 26 chr4 138467399 138467706 -63860641 - L2 LINE L2 -665 2649 2328 717 321 145 40 chr4 138469668 138470290 -63858057 - L2 LINE L2 -351 2963 2277 1202 153 44 25 chr4 138470604 138470878 -63857469 - L1MA8 LINE L1 -1 6290 6012 1724 145 0 0 chr4 138470878 138471160 -63857187 + L1M2 LINE L1 5288 5569 -722 * 5700 153 24 46 chr4 138471152 138472390 -63855957 - L1MA8 LINE L1 -285 6015 4752 234 0 0 0 chr4 138472390 138472416 -63855931 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1919 142 3 0 chr4 138472419 138472701 -63855646 - AluSx SINE Alu -29 283 1 5700 153 24 46 chr4 138472701 138473281 -63855066 - L1MA8 LINE L1 -1550 4750 4238 1933 80 0 104 chr4 138473281 138473607 -63854740 + AluY SINE Alu 1 292 -19 5700 153 24 46 chr4 138473607 138473729 -63854618 - L1MA8 LINE L1 -2062 4238 4115 917 299 86 15 chr4 138474780 138475285 -63853062 + MLT2E LTR ERVL 44 613 -15 224 310 0 0 chr4 138475838 138475909 -63852438 + (CA)n Simple_repeat Simple_repeat 1 71 0 209 179 0 0 chr4 138478100 138478139 -63850208 + (TG)n Simple_repeat Simple_repeat 2 40 0 768 242 11 21 chr4 138478407 138478593 -63849754 + MER5A DNA MER1_type 4 187 -2 29 0 0 0 chr4 138478699 138478728 -63849619 + AT_rich Low_complexity Low_complexity 1 29 0 2181 92 3 20 chr4 138479889 138480195 -63848152 - AluSc SINE Alu -8 301 1 454 365 40 31 chr4 138480442 138480793 -63847554 - HAL1b LINE L1 -533 815 462 291 214 0 0 chr4 138481972 138482042 -63846305 + (TATATG)n Simple_repeat Simple_repeat 1 70 0 272 349 16 16 chr4 138482465 138482591 -63845756 - MLT1L LTR MaLR -414 201 76 204 196 59 0 chr4 138482841 138482892 -63845455 + MIR SINE MIR 117 170 -92 22 35 0 0 chr4 138483113 138483142 -63845205 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 138483461 138483492 -63844855 + AT_rich Low_complexity Low_complexity 1 31 0 1485 176 0 25 chr4 138483572 138483850 -63844497 - AluJb SINE Alu 0 312 42 8206 183 38 18 chr4 138484199 138486583 -63841764 + L1PB4 LINE L1 3352 5795 -361 252 86 0 0 chr4 138486583 138486618 -63841729 + (TG)n Simple_repeat Simple_repeat 2 36 0 8206 183 38 18 chr4 138486618 138486987 -63841360 + L1PB4 LINE L1 5795 6155 -1 366 341 44 31 chr4 138487011 138487237 -63841110 + L1M4 LINE L1 10 238 -6304 339 113 0 0 chr4 138487337 138487390 -63840957 + (CA)n Simple_repeat Simple_repeat 2 54 0 593 181 0 0 chr4 138487510 138487626 -63840721 + AluSq/x SINE Alu 1 116 -197 216 200 0 0 chr4 138487636 138487691 -63840656 + (TA)n Simple_repeat Simple_repeat 2 56 0 913 9 0 0 chr4 138488216 138488322 -63840025 + AluY SINE Alu 206 311 0 1866 130 3 26 chr4 138488686 138488993 -63839354 + AluSx SINE Alu 1 300 -12 272 336 86 0 chr4 138489562 138489678 -63838669 + L2 LINE L2 3162 3287 -26 26 50 0 0 chr4 138490820 138490860 -63837487 + AT_rich Low_complexity Low_complexity 1 40 0 31 26 0 0 chr4 138491594 138491632 -63836715 + AT_rich Low_complexity Low_complexity 1 38 0 201 178 0 0 chr4 138492099 138492144 -63836203 + T-rich Low_complexity Low_complexity 1 45 0 870 243 5 5 chr4 138492785 138492999 -63835348 - L1MC4 LINE L1 -490 7552 7339 265 348 65 0 chr4 138493497 138493635 -63834712 - LTR52 LTR ERVL -5 416 270 2426 124 0 3 chr4 138494209 138494580 -63833767 - L1PB1 LINE L1 0 6151 5782 235 152 0 0 chr4 138494585 138494631 -63833716 - LTR66 LTR ERVL -171 439 394 213 121 0 0 chr4 138494635 138494668 -63833679 + (CATATA)n Simple_repeat Simple_repeat 6 38 0 2124 191 25 3 chr4 138494671 138496034 -63832313 - L1PB1 LINE L1 -359 5792 4240 2278 97 13 0 chr4 138498111 138498411 -63829936 + AluSg SINE Alu 1 304 -6 254 264 132 38 chr4 138498516 138498622 -63829725 + MER5A DNA MER1_type 49 164 -25 511 294 99 86 chr4 138498842 138499295 -63829052 - MLT1L LTR MaLR 0 615 157 27 29 0 0 chr4 138499459 138499493 -63828854 + AT_rich Low_complexity Low_complexity 1 34 0 1316 216 248 64 chr4 138499602 138500070 -63828277 + MLT2B1 LTR ERVL 1 554 0 1253 116 3 4 chr4 138500299 138500621 -63827726 + MER41A LTR ERV1 3 366 -188 3102 62 14 0 chr4 138500622 138501084 -63827263 + L1P3 LINE L1 5195 5662 -492 9337 170 18 49 chr4 138501187 138501975 -63826372 - L1MA4A LINE L1 -225 6078 5267 1758 191 0 3 chr4 138501975 138502278 -63826069 - AluJb SINE Alu -10 302 1 9337 170 18 49 chr4 138502278 138504457 -63823890 - L1MA4A LINE L1 -1036 5267 3204 344 364 68 32 chr4 138504566 138504846 -63823501 - L2 LINE L2 -805 2509 2220 2966 93 21 2 chr4 138505072 138505502 -63822845 + L1PA10 LINE L1 5728 6165 -3 1245 188 39 39 chr4 138505592 138505910 -63822437 + AluJo SINE Alu 3 320 0 5303 193 61 3 chr4 138505961 138507275 -63821072 - L1MA4 LINE L1 -7 7712 6304 4636 172 32 130 chr4 138507284 138508216 -63820131 - L1MA4 LINE L1 -1773 5792 5057 1106 110 6 0 chr4 138508216 138508377 -63819970 + L1PA7 LINE L1 5987 6151 -3 4636 172 32 130 chr4 138508377 138508925 -63819422 - L1MA4 LINE L1 -2508 5057 4457 846 89 81 0 chr4 138508975 138509099 -63819248 - MER85 DNA T2_type -5 134 1 909 224 99 0 chr4 138509103 138509366 -63818981 - L1MA4 LINE L1 -4404 3161 2873 3124 60 7 2 chr4 138509472 138509875 -63818472 + L1PA7 LINE L1 5745 6149 -5 1086 121 6 0 chr4 138509880 138510054 -63818293 + MER41A LTR ERV1 380 554 0 2347 87 3 3 chr4 138510460 138510760 -63817587 + AluSc SINE Alu 1 300 -9 588 300 195 48 chr4 138510778 138510986 -63817361 + L2 LINE L2 2452 2628 -685 360 0 0 0 chr4 138510986 138511026 -63817321 + (CA)n Simple_repeat Simple_repeat 2 41 0 588 300 195 48 chr4 138511026 138511367 -63816980 + L2 LINE L2 2628 3081 -232 2210 96 3 0 chr4 138511509 138511814 -63816533 - AluSp SINE Alu 0 306 1 670 150 55 8 chr4 138512086 138512213 -63816134 - L1MA3 LINE L1 -98 6207 6075 218 301 146 16 chr4 138512338 138512461 -63815886 - MIR SINE MIR -74 188 50 544 124 0 29 chr4 138512867 138512972 -63815375 + L1MA5A LINE L1 6191 6292 -5 336 272 18 26 chr4 138513426 138513540 -63814807 + MER69 DNA AcHobo 1 113 -2413 433 250 50 0 chr4 138514342 138514462 -63813885 + MER3 DNA MER1_type 80 205 -4 264 311 42 67 chr4 138514919 138515112 -63813235 + MIR SINE MIR 47 234 -28 39 80 0 0 chr4 138515364 138515452 -63812895 + AT_rich Low_complexity Low_complexity 1 88 0 367 258 11 0 chr4 138516297 138516390 -63811957 - L2 LINE L2 0 3313 3220 411 343 56 34 chr4 138516975 138517208 -63811139 + MIR SINE MIR 20 257 -5 5065 128 13 5 chr4 138518019 138518810 -63809537 + L1PB2 LINE L1 5355 6151 0 22 56 0 0 chr4 138518904 138518940 -63809407 + AT_rich Low_complexity Low_complexity 1 36 0 794 278 19 14 chr4 138519916 138520125 -63808222 - MIR SINE MIR -27 235 26 270 141 30 5 chr4 138522440 138522638 -63805709 + AluSp SINE Alu 1 293 -7 23 54 0 0 chr4 138523291 138523328 -63805019 + AT_rich Low_complexity Low_complexity 1 37 0 201 94 0 0 chr4 138523347 138523379 -63804968 + (TA)n Simple_repeat Simple_repeat 2 33 0 1192 220 17 4 chr4 138523946 138524182 -63804165 + MER8 DNA MER2_type 1 239 0 426 290 35 47 chr4 138524412 138524581 -63803766 + MLT1K LTR MaLR 315 481 -107 5508 228 98 32 chr4 138524627 138525422 -63802925 - MER52A LTR ERV1 0 1755 1014 4355 116 45 12 chr4 138525422 138526088 -63802259 + LTR12 LTR ERV1 1 688 0 5508 228 98 32 chr4 138526088 138526895 -63801452 - MER52A LTR ERV1 -741 1014 47 764 88 9 0 chr4 138527217 138527331 -63801016 + (TTCCC)n Simple_repeat Simple_repeat 3 117 0 216 0 0 0 chr4 138527332 138527356 -63800991 + (TC)n Simple_repeat Simple_repeat 1 24 0 1412 194 14 3 chr4 138527356 138527640 -63800707 - AluJb SINE Alu -5 307 21 193 245 19 0 chr4 138527677 138527730 -63800617 + MIR SINE MIR 195 248 -14 272 334 39 25 chr4 138527788 138527934 -63800413 + MIR SINE MIR 15 163 -45 644 331 77 12 chr4 138528032 138528355 -63799992 - L3 LINE CR1 -7 1570 1227 476 256 8 0 chr4 138528355 138528472 -63799875 + MER94 DNA DNA 1 118 -16 214 286 104 13 chr4 138529534 138529611 -63798736 + L2 LINE L2 2658 2741 -573 722 326 171 25 chr4 138529699 138530379 -63797968 + L2 LINE L2 1687 2465 -849 259 319 21 11 chr4 138530715 138530809 -63797538 - MIR SINE MIR -71 191 97 785 228 14 41 chr4 138534321 138534540 -63793807 + MER96B DNA MER1_type? 25 237 -180 360 268 210 6 chr4 138535387 138535544 -63792803 + MER5A DNA MER1_type 1 189 0 557 258 53 13 chr4 138535976 138536127 -63792220 - MER63A DNA MER1_type 0 210 54 8767 174 30 23 chr4 138536351 138539530 -63788817 - L1PBa LINE L1 -2122 4740 1583 195 69 0 0 chr4 138539530 138539559 -63788788 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1741 126 80 8 chr4 138539563 138539825 -63788522 - AluSg SINE Alu -24 286 6 8767 174 30 23 chr4 138539825 138540032 -63788315 - L1PBa LINE L1 -5281 1581 1329 465 161 0 12 chr4 138540034 138540115 -63788232 - L1PBa LINE L1 -5691 1172 1093 3938 224 60 6 chr4 138540116 138541106 -63787241 - L1PBa LINE L1 -5815 1048 6 329 283 44 31 chr4 138541203 138541429 -63786918 - L1MEc LINE L1 -4748 1562 1334 401 261 45 56 chr4 138541497 138541765 -63786582 - L1MEc LINE L1 -4906 1213 949 2302 82 10 0 chr4 138541781 138542084 -63786263 + AluY SINE Alu 1 306 -5 2816 175 147 100 chr4 138542131 138542607 -63785740 - L1MC3 LINE L1 -95 7690 7238 232 325 0 0 chr4 138542607 138542684 -63785663 - MLT1F1 LTR MaLR -460 107 31 2816 175 147 100 chr4 138542684 138543092 -63785255 - L1MC3 LINE L1 -547 7238 6685 21 82 0 0 chr4 138543141 138543190 -63785157 + AT_rich Low_complexity Low_complexity 1 49 0 1086 202 210 33 chr4 138543345 138543707 -63784640 - MSTC LTR MaLR -2 426 1 637 235 96 53 chr4 138543886 138544167 -63784180 + L1MCc LINE L1 1188 1480 -4943 9906 223 44 45 chr4 138544741 138546248 -63782099 - L1 LINE L1 -3130 4037 2530 2053 121 10 0 chr4 138546248 138546538 -63781809 - AluSq SINE Alu -20 293 1 9906 223 44 45 chr4 138546538 138549039 -63779308 - L1 LINE L1 -4637 2530 3 24 67 0 0 chr4 138549495 138549540 -63778807 + AT_rich Low_complexity Low_complexity 1 45 0 2002 131 50 0 chr4 138550179 138550476 -63777871 + AluSx SINE Alu 1 312 0 3247 123 36 4 chr4 138550983 138551478 -63776869 + MER9 LTR ERVK 1 511 0 1586 173 83 0 chr4 138551932 138552233 -63776114 - Tigger2a DNA MER2_type -108 326 1 324 224 75 19 chr4 138552233 138552339 -63776008 - MER53 DNA DNA -76 113 2 353 370 17 6 chr4 138552344 138552517 -63775830 - ERVL LTR ERVL -544 5220 5046 2001 293 54 5 chr4 138552753 138553384 -63774963 - ERVL LTR ERVL -952 4812 4151 2113 266 26 10 chr4 138553488 138554311 -63774036 - L1M2 LINE L1 -4411 2438 1611 585 357 56 36 chr4 138554789 138555257 -63773090 - L1M2 LINE L1 -5799 980 504 262 380 33 0 chr4 138556241 138556362 -63771985 - L3 LINE CR1 -1084 493 369 1578 237 99 49 chr4 138556785 138557423 -63770924 + MER97c DNA MER1_type? 1 670 -420 229 223 39 29 chr4 138558106 138558209 -63770138 + (TA)n Simple_repeat Simple_repeat 2 105 0 3592 174 10 4 chr4 138558270 138558995 -63769352 + L1MC2 LINE L1 5166 5897 -447 303 335 70 47 chr4 138559021 138559278 -63769069 + HAL1 LINE L1 991 1253 -1254 753 180 5 99 chr4 138559289 138559500 -63768847 + L1MA9 LINE L1 6119 6309 -3 1242 278 115 48 chr4 138559540 138560606 -63767741 + HAL1 LINE L1 1370 2507 0 22 0 0 0 chr4 138560977 138560999 -63767348 + AT_rich Low_complexity Low_complexity 1 22 0 481 329 94 7 chr4 138561724 138562001 -63766346 - L2 LINE L2 -8 3305 3005 716 291 94 33 chr4 138562058 138562546 -63765801 - L1ME3A LINE L1 -63 6176 5659 434 313 95 9 chr4 138562547 138562758 -63765589 - LTR16A LTR ERVL -1 449 221 408 318 83 8 chr4 138562799 138563063 -63765284 - L1ME3A LINE L1 -3129 3086 2803 1463 204 70 57 chr4 138563066 138563433 -63764914 + MLT2D LTR ERVL 1 375 -39 228 67 0 0 chr4 138563433 138563463 -63764884 + (CATA)n Simple_repeat Simple_repeat 3 32 0 1463 204 70 57 chr4 138563463 138563496 -63764851 + MLT2D LTR ERVL 375 406 -8 352 300 95 18 chr4 138563506 138563779 -63764568 - L1ME3A LINE L1 -3417 2798 2505 351 295 126 24 chr4 138563993 138564200 -63764147 - L1ME3A LINE L1 -4061 2335 2108 227 211 0 28 chr4 138565776 138565847 -63762500 + (TATATG)n Simple_repeat Simple_repeat 6 74 0 260 326 43 36 chr4 138565884 138566022 -63762325 - L2 LINE L2 0 3313 3175 653 291 41 0 chr4 138566155 138566327 -63762020 - MIR SINE MIR -73 189 11 2234 95 10 7 chr4 138567575 138567881 -63760466 - AluSc SINE Alu -2 307 1 21 0 0 0 chr4 138568230 138568251 -63760096 + AT_rich Low_complexity Low_complexity 1 21 0 203 369 0 0 chr4 138570609 138570693 -63757654 - L2 LINE L2 -4 3309 3226 6492 77 8 15 chr4 138573155 138574565 -63753782 + L1PA6 LINE L1 4762 6166 0 21 0 0 0 chr4 138575233 138575254 -63753093 + AT_rich Low_complexity Low_complexity 1 21 0 525 264 21 21 chr4 138576381 138576521 -63751826 + MIR SINE MIR 25 164 -98 4163 233 35 25 chr4 138576523 138577391 -63750956 - MER45B DNA AcHobo -542 1039 158 2025 162 28 0 chr4 138577391 138577743 -63750604 - THE1B LTR MaLR -2 362 1 4163 233 35 25 chr4 138577743 138577899 -63750448 - MER45B DNA AcHobo -1423 158 5 303 314 29 10 chr4 138577903 138578005 -63750342 + MIR SINE MIR 159 262 0 193 318 34 0 chr4 138578353 138578441 -63749906 + MIR SINE MIR 123 213 -49 2279 82 0 0 chr4 138578452 138578745 -63749602 - AluY SINE Alu -17 294 2 21 0 0 0 chr4 138579553 138579574 -63748773 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4 138579631 138579662 -63748685 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 138579790 138579812 -63748535 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr4 138580175 138580218 -63748129 + AT_rich Low_complexity Low_complexity 1 43 0 308 83 21 0 chr4 138580278 138580326 -63748021 + (GA)n Simple_repeat Simple_repeat 1 49 0 441 304 152 18 chr4 138581591 138581817 -63746530 + MIR SINE MIR 11 262 0 1524 143 0 46 chr4 138581855 138582135 -63746212 + MER34B LTR ERV1 4 270 -295 2895 154 7 63 chr4 138582142 138582741 -63745606 - MER34B LTR ERV1 0 565 1 453 317 135 47 chr4 138583249 138583612 -63744735 + MLT1I LTR MaLR 11 405 -4 859 118 7 22 chr4 138583679 138583815 -63744532 - THE1C LTR MaLR 0 375 242 274 156 22 0 chr4 138583839 138583884 -63744463 - THE1-int LTR MaLR -903 677 632 2232 152 9 0 chr4 138583884 138584232 -63744115 + THE1B LTR MaLR 14 364 0 1106 166 31 27 chr4 138584237 138584460 -63743887 - THE1C LTR MaLR -151 224 1 7807 155 35 41 chr4 138584460 138586049 -63742298 - THE1C-int LTR MaLR 0 1580 1 1823 138 58 22 chr4 138586049 138586411 -63741936 - THE1C LTR MaLR 0 375 1 1417 171 69 43 chr4 138586836 138586997 -63741350 - AluJb SINE Alu 0 312 157 246 32 0 0 chr4 138586997 138587028 -63741319 + (TA)n Simple_repeat Simple_repeat 1 31 0 1417 171 69 43 chr4 138587028 138587170 -63741177 - AluJb SINE Alu -155 157 1 24 53 0 0 chr4 138587172 138587210 -63741137 + AT_rich Low_complexity Low_complexity 1 38 0 249 139 0 0 chr4 138587846 138587889 -63740458 + (CA)n Simple_repeat Simple_repeat 2 44 0 24 32 0 0 chr4 138588061 138588092 -63740255 + AT_rich Low_complexity Low_complexity 1 31 0 224 96 56 67 chr4 138588313 138588491 -63739856 + (TA)n Simple_repeat Simple_repeat 2 177 0 2385 281 115 8 chr4 138588830 138589619 -63738728 + L1MC/D LINE L1 409 1282 -5127 4809 231 45 37 chr4 138589637 138591204 -63737143 + L1MC/D LINE L1 3861 5436 -1176 2093 106 3 0 chr4 138591204 138591488 -63736859 + AluSp SINE Alu 16 300 -13 4809 231 45 37 chr4 138591488 138591926 -63736421 + L1MC/D LINE L1 5436 5869 -743 2159 120 3 3 chr4 138792209 138792551 -63535796 + AluSc SINE Alu 1 342 0 966 226 9 5 chr4 138793324 138793541 -63534806 + MER20 DNA MER1_type 2 219 0 24 53 0 0 chr4 138794167 138794205 -63534142 + AT_rich Low_complexity Low_complexity 1 38 0 29 28 0 0 chr4 138794247 138794283 -63534064 + AT_rich Low_complexity Low_complexity 1 36 0 2176 79 3 35 chr4 138794397 138794715 -63533632 - AluY SINE Alu -3 308 1 23449 83 10 20 chr4 138795101 138799397 -63528950 + L1PA6 LINE L1 1907 6154 0 32 26 0 0 chr4 138799874 138799913 -63528434 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr4 138800267 138800288 -63528059 + AT_rich Low_complexity Low_complexity 1 21 0 4346 155 54 18 chr4 138801629 138801987 -63526360 - MER4D LTR ERV1 0 866 522 2057 115 24 3 chr4 138801987 138802283 -63526064 + AluSp SINE Alu 1 302 -11 4346 155 54 18 chr4 138802283 138802770 -63525577 - MER4D LTR ERV1 -344 522 28 2094 141 47 54 chr4 138802771 138803198 -63525149 - MER50 LTR ERV1 0 734 311 507 167 31 10 chr4 138803200 138803296 -63525051 + MER4A LTR ERV1 1 98 -566 1823 136 17 19 chr4 138803296 138803642 -63524705 + MER4A LTR ERV1 261 664 0 1613 175 18 0 chr4 138803658 138803944 -63524403 - MER50 LTR ERV1 -443 291 1 1359 299 75 14 chr4 138803983 138804465 -63523882 + LTR40a LTR ERVL 7 517 -2 346 321 43 21 chr4 138805084 138805224 -63523123 + L2 LINE L2 3167 3309 -4 232 362 130 16 chr4 138805462 138805647 -63522700 + L2 LINE L2 3067 3272 0 2097 174 36 0 chr4 138805680 138806066 -63522281 + MER57A LTR ERV1 3 402 -1 21 82 0 0 chr4 138806119 138806168 -63522179 + AT_rich Low_complexity Low_complexity 1 49 0 317 313 55 55 chr4 138807807 138807989 -63520358 + MER5A DNA MER1_type 1 182 -7 270 81 0 0 chr4 138808000 138808037 -63520310 + (TA)n Simple_repeat Simple_repeat 1 37 0 237 33 0 0 chr4 138808038 138808068 -63520279 + (CA)n Simple_repeat Simple_repeat 2 31 0 1872 136 24 7 chr4 138808103 138808390 -63519957 + AluSx SINE Alu 1 292 -20 2056 110 0 23 chr4 138808628 138808929 -63519418 - AluY SINE Alu -17 294 1 248 323 0 0 chr4 138809158 138809254 -63519093 + (CTATA)n Simple_repeat Simple_repeat 5 100 0 209 281 0 0 chr4 138809580 138809637 -63518710 + (TATATG)n Simple_repeat Simple_repeat 5 61 0 182 128 26 0 chr4 138809641 138809680 -63518667 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 5387 30 0 0 chr4 138810038 138810672 -63517675 + L1PA4 LINE L1 5522 6155 0 1658 217 13 3 chr4 138810815 138811133 -63517214 - MLT1A1 LTR MaLR 0 365 45 1939 133 0 13 chr4 138811155 138811472 -63516875 - AluYb8 SINE Alu -5 313 1 1159 328 72 11 chr4 138811664 138812195 -63516152 - L2 LINE L2 -596 2718 2156 27 62 0 0 chr4 138812749 138812797 -63515550 + AT_rich Low_complexity Low_complexity 1 48 0 1990 206 97 4 chr4 138813409 138813871 -63514476 - MLT1D LTR MaLR 0 505 1 795 168 6 56 chr4 138814400 138814561 -63513786 - Tigger2 DNA MER2_type -12 2706 2554 * 1182 144 29 5 chr4 138814558 138814766 -63513581 - Tigger2 DNA MER2_type -2505 213 1 1449 189 3 55 chr4 138815058 138815365 -63512982 + AluJo SINE Alu 1 291 -11 1495 225 8 25 chr4 138815471 138815827 -63512520 - MLT1A1 LTR MaLR -15 350 1 1564 96 0 85 chr4 138817335 138817595 -63510752 - AluY SINE Alu -4 307 70 242 356 20 40 chr4 138819055 138819156 -63509191 - L2 LINE L2 -3 3269 3171 2026 119 0 31 chr4 138819729 138820023 -63508324 + AluSg SINE Alu 3 287 -23 24 32 0 0 chr4 138822603 138822634 -63505713 + AT_rich Low_complexity Low_complexity 1 31 0 288 77 0 0 chr4 138822709 138822748 -63505599 + (CA)n Simple_repeat Simple_repeat 2 40 0 540 350 14 14 chr4 138823149 138823366 -63504981 - MER58A DNA MER1_type -7 217 1 778 269 0 20 chr4 138824022 138824223 -63504124 - MIR SINE MIR -25 237 41 1028 152 11 5 chr4 138824232 138824423 -63503924 - L1MA4A LINE L1 -6 6297 6106 986 222 5 0 chr4 138824538 138824732 -63503615 - AluJo SINE Alu -117 195 1 484 300 7 7 chr4 138825138 138825288 -63503059 - MIR SINE MIR -45 217 68 2027 134 0 10 chr4 138825879 138826184 -63502163 + AluSx SINE Alu 1 302 -10 198 103 0 0 chr4 138827329 138827358 -63500989 + (T)n Simple_repeat Simple_repeat 1 29 0 229 283 67 17 chr4 138827406 138827526 -63500821 + L1MEd LINE L1 1037 1162 -4957 889 140 12 0 chr4 138827602 138827766 -63500581 + GA-rich Low_complexity Low_complexity 3 168 0 4072 199 54 32 chr4 138827835 138829387 -63498960 + MER52A LTR ERV1 2 1753 -2 202 318 104 45 chr4 138830363 138830517 -63497830 + L2 LINE L2 3110 3272 0 243 310 54 59 chr4 138830905 138831108 -63497239 + LTR68 LTR ERV1 7 208 -532 383 176 12 24 chr4 138831719 138831804 -63496543 - L2 LINE L2 -9 3304 3221 265 255 142 9 chr4 138832149 138832255 -63496092 + MIR3 SINE MIR 85 204 -4 29 47 0 0 chr4 138832268 138832311 -63496036 + AT_rich Low_complexity Low_complexity 1 43 0 346 233 121 26 chr4 138832481 138832597 -63495750 + L2 LINE L2 3162 3288 -25 1451 181 23 11 chr4 138832899 138833165 -63495182 + AluJo SINE Alu 11 279 -33 21 57 0 0 chr4 138833510 138833545 -63494802 + AT_rich Low_complexity Low_complexity 1 35 0 617 311 23 15 chr4 138834730 138834990 -63493357 - MLT1A1 LTR MaLR -59 306 45 2785 6 0 13 chr4 138835011 138835328 -63493019 - AluYb8 SINE Alu -5 313 1 317 186 0 0 chr4 138835328 138835382 -63492965 - MLT1A1 LTR MaLR -311 54 1 222 37 0 0 chr4 138835433 138835460 -63492887 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 319 371 26 30 chr4 138836547 138836814 -63491533 - L1M4 LINE L1 -1987 4159 3894 491 303 94 41 chr4 138836814 138837058 -63491289 + MIR SINE MIR 6 262 0 863 240 105 72 chr4 138837199 138837626 -63490721 - MLT1C LTR MaLR -2 465 13 253 361 21 7 chr4 138838346 138838490 -63489857 - MERVL LTR ERVL -3498 1987 1842 2934 167 12 20 chr4 138839025 138839617 -63488730 + L1MA4A LINE L1 5712 6298 -5 309 344 13 19 chr4 138839617 138839774 -63488573 - MERVL LTR ERVL -4443 1321 1166 508 313 52 30 chr4 138842134 138842364 -63485983 + MIR SINE MIR 28 262 0 21 0 0 0 chr4 138843556 138843577 -63484770 + AT_rich Low_complexity Low_complexity 1 21 0 9044 240 69 33 chr4 138843722 138847590 -63480757 - L1PA16 LINE L1 -334 5832 1819 201 147 0 0 chr4 138848724 138848758 -63479589 + (TA)n Simple_repeat Simple_repeat 1 34 0 267 207 98 0 chr4 138848761 138848843 -63479504 - L1MC4 LINE L1 -1339 6703 6614 1467 134 57 16 chr4 138848867 138849113 -63479234 - AluSq SINE Alu -57 256 1 22 80 0 0 chr4 138849309 138849359 -63478988 + AT_rich Low_complexity Low_complexity 1 50 0 469 220 71 0 chr4 138850159 138850300 -63478047 + L1MA7 LINE L1 2891 3041 -3105 * 5511 192 25 29 chr4 138850295 138852468 -63475879 + L1MA7 LINE L1 4053 6222 -69 24 0 0 0 chr4 138853157 138853181 -63475166 + AT_rich Low_complexity Low_complexity 1 24 0 535 313 61 51 chr4 138853715 138854107 -63474240 + LTR16A1 LTR ERVL 73 453 -4 509 323 51 0 chr4 138854137 138854332 -63474015 + HERV16 LTR ERVL 39 243 -4753 443 371 22 16 chr4 138854870 138855188 -63473159 + HERV16 LTR ERVL 963 1282 -3714 721 371 54 32 chr4 138855416 138856271 -63472076 + MERVL-C1 LTR ERVL 4411 5284 -201 3831 158 53 10 chr4 138856607 138857289 -63471058 - MER50 LTR ERV1 -23 711 1 2918 156 35 80 chr4 138857535 138858259 -63470088 + LTR8 LTR ERV1 1 691 0 589 286 132 56 chr4 138858261 138858639 -63469708 + MLT1H LTR MaLR 140 546 -3 403 301 24 0 chr4 138858651 138858774 -63469573 + LTR16A1 LTR ERVL 332 457 0 1483 180 80 25 chr4 138860655 138860982 -63467365 + MLT2C1 LTR ERVL 5 349 -48 269 153 0 17 chr4 138861010 138861069 -63467278 + (TA)n Simple_repeat Simple_repeat 1 58 0 2382 139 31 0 chr4 138861075 138861464 -63466883 + MER57A LTR ERV1 3 403 0 192 152 0 0 chr4 138861484 138861517 -63466830 + (CA)n Simple_repeat Simple_repeat 2 34 0 29 18 0 55 chr4 138861517 138861572 -63466775 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr4 138861993 138862016 -63466331 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 138862273 138862295 -63466052 + AT_rich Low_complexity Low_complexity 1 22 0 243 236 0 0 chr4 138862654 138862709 -63465638 + CT-rich Low_complexity Low_complexity 2 56 0 231 227 0 0 chr4 138862710 138862776 -63465571 + (TA)n Simple_repeat Simple_repeat 1 66 0 801 291 29 12 chr4 138863088 138863332 -63465015 - MLT1E2 LTR MaLR -378 248 1 338 224 84 9 chr4 138863356 138863463 -63464884 + MIR SINE MIR 104 218 -44 1304 234 57 39 chr4 138864181 138864570 -63463777 + MSTD LTR MaLR 1 396 0 6434 141 35 55 chr4 138866674 138866980 -63461367 + Tigger3b DNA MER2_type 1 312 -2716 3146 30 0 0 chr4 138866980 138867349 -63460998 - L1PA3 LINE L1 -5 6150 5782 6434 141 35 55 chr4 138867349 138867844 -63460503 + Tigger3b DNA MER2_type 312 771 -2257 1635 192 0 3 chr4 138867844 138868135 -63460212 - AluJo SINE Alu -22 290 1 6434 141 35 55 chr4 138868135 138868588 -63459759 + Tigger3b DNA MER2_type 771 1231 0 24 0 0 0 chr4 138868759 138868783 -63459564 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 138869023 138869051 -63459296 + AT_rich Low_complexity Low_complexity 1 28 0 189 273 140 80 chr4 138869382 138869532 -63458815 - L3 LINE CR1 -336 1241 1083 286 337 44 28 chr4 138873504 138873685 -63454662 + MIR SINE MIR 2 185 -77 21 36 0 0 chr4 138874588 138874616 -63453731 + AT_rich Low_complexity Low_complexity 1 28 0 328 324 20 20 chr4 138874616 138874820 -63453527 - L1MB1 LINE L1 -291 5898 5695 282 239 43 0 chr4 138874852 138874944 -63453403 + (TA)n Simple_repeat Simple_repeat 2 97 0 182 245 41 0 chr4 138875118 138875167 -63453180 + MIR SINE MIR 91 141 -121 25 75 0 0 chr4 138875255 138875308 -63453039 + AT_rich Low_complexity Low_complexity 1 53 0 539 264 28 14 chr4 138875641 138875785 -63452562 + MIR SINE MIR 90 235 -27 333 327 86 17 chr4 138875974 138876226 -63452121 + L2 LINE L2 2731 3002 -311 8419 106 13 11 chr4 138876250 138877445 -63450902 - HSMAR1 DNA Mariner -89 1198 1 208 218 26 13 chr4 138877561 138877639 -63450708 + (TA)n Simple_repeat Simple_repeat 1 79 0 27 29 0 0 chr4 138877998 138878032 -63450315 + AT_rich Low_complexity Low_complexity 1 34 0 23 54 0 0 chr4 138878215 138878252 -63450095 + AT_rich Low_complexity Low_complexity 1 37 0 1525 155 29 43 chr4 138878894 138879223 -63449124 - AluSx SINE Alu 0 335 11 4888 142 11 24 chr4 138879604 138880486 -63447861 + L1PB4 LINE L1 5279 6149 -7 206 118 0 0 chr4 138880623 138880657 -63447690 + (T)n Simple_repeat Simple_repeat 1 34 0 1808 148 49 0 chr4 138880783 138880909 -63447438 + AluSx SINE Alu 1 119 -193 276 30 0 0 chr4 138880909 138880942 -63447405 + (CA)n Simple_repeat Simple_repeat 2 34 0 1808 148 49 0 chr4 138880942 138881099 -63447248 + AluSx SINE Alu 119 298 -14 21 0 0 0 chr4 138884052 138884073 -63444274 + AT_rich Low_complexity Low_complexity 1 21 0 225 65 0 0 chr4 138886027 138886058 -63442289 + (TG)n Simple_repeat Simple_repeat 2 32 0 2712 48 0 0 chr4 138886214 138886545 -63441802 + L1PA7 LINE L1 5824 6154 0 302 182 0 0 chr4 138886545 138886611 -63441736 + MER2 DNA MER2_type 84 149 -196 3519 260 62 25 chr4 138886614 138887048 -63441299 - L1MDb LINE L1 -2160 4246 3830 2291 87 3 3 chr4 138887048 138887359 -63440988 + AluY SINE Alu 1 311 0 3519 260 62 25 chr4 138887359 138889273 -63439074 - L1MDb LINE L1 -2576 3830 1771 963 78 28 14 chr4 138889273 138889414 -63438933 + L1PA8 LINE L1 6028 6170 -2 3519 260 62 25 chr4 138889414 138889875 -63438472 - L1MDb LINE L1 -4635 1771 1329 480 77 0 0 chr4 138890581 138890646 -63437701 + (CA)n Simple_repeat Simple_repeat 1 65 0 192 125 0 0 chr4 138890731 138890763 -63437584 + (CA)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr4 138890949 138890977 -63437370 + AT_rich Low_complexity Low_complexity 1 28 0 2003 139 3 3 chr4 138892347 138892650 -63435697 + AluSx SINE Alu 1 303 -9 24 0 0 0 chr4 138892958 138892982 -63435365 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 138893357 138893379 -63434968 + AT_rich Low_complexity Low_complexity 1 22 0 1760 257 34 85 chr4 138893390 138894349 -63433998 + L1M3e LINE L1 6 1013 -6093 318 26 0 0 chr4 138894349 138894388 -63433959 + (GA)n Simple_repeat Simple_repeat 2 40 0 1882 136 0 21 chr4 138894390 138894670 -63433677 - AluSg SINE Alu -36 274 1 23 0 0 0 chr4 138894672 138894695 -63433652 + AT_rich Low_complexity Low_complexity 1 23 0 1760 257 34 85 chr4 138894695 138895371 -63432976 + L1M3e LINE L1 1015 2512 -4594 * 3773 200 52 46 chr4 138895364 138896279 -63432068 + L1M3e LINE L1 3783 4691 -2415 2181 101 30 3 chr4 138896279 138896577 -63431770 + AluY SINE Alu 1 306 -5 3773 200 52 46 chr4 138896577 138896741 -63431606 + L1M3e LINE L1 4691 4872 -2234 7665 22 6 0 chr4 138896741 138897850 -63430497 - L1PA3 LINE L1 -3 6152 5042 3773 200 52 46 chr4 138897850 138897951 -63430396 + L1M3e LINE L1 4872 4971 -2135 952 185 46 15 chr4 138897958 138898218 -63430129 + L1MA8 LINE L1 6016 6283 -8 30 0 0 0 chr4 138898222 138898252 -63430095 + AT_rich Low_complexity Low_complexity 1 30 0 2002 147 0 0 chr4 138898357 138898650 -63429697 - AluSx SINE Alu -14 298 6 10750 157 18 24 chr4 138898702 138900629 -63427718 + L1P LINE L1 11 1925 -4221 30 0 0 0 chr4 138901078 138901108 -63427239 + AT_rich Low_complexity Low_complexity 1 30 0 186 43 0 0 chr4 138902153 138902176 -63426171 + (TTTC)n Simple_repeat Simple_repeat 4 26 0 23 0 0 0 chr4 138902320 138902343 -63426004 + AT_rich Low_complexity Low_complexity 1 23 0 10698 202 57 10 chr4 138902391 138903313 -63425034 + L1PA13 LINE L1 2 879 -5908 1589 156 72 31 chr4 138903313 138903673 -63424674 + THE1C LTR MaLR 1 375 0 10698 202 57 10 chr4 138903673 138904798 -63423549 + L1PA13 LINE L1 879 2145 -4642 2385 124 15 39 chr4 138904798 138905209 -63423138 + MER75 DNA T2_type 114 514 0 15322 184 24 14 chr4 138905209 138909487 -63418860 + L1PA13 LINE L1 2492 6812 -2 26 30 0 0 chr4 138910524 138910557 -63417790 + AT_rich Low_complexity Low_complexity 1 33 0 964 91 0 0 chr4 138910557 138910678 -63417669 - AluY SINE Alu -19 292 172 21 0 0 0 chr4 138911031 138911052 -63417295 + AT_rich Low_complexity Low_complexity 1 21 0 1887 140 3 32 chr4 138911130 138911445 -63416902 - AluSx SINE Alu -6 306 1 817 150 15 0 chr4 138911945 138912078 -63416269 + AluSg/x SINE Alu 173 307 -5 1159 296 95 18 chr4 138912265 138912769 -63415578 - MLT1H LTR MaLR 0 549 7 1322 100 57 52 chr4 138913496 138913725 -63414622 - MER30 DNA MER1_type 0 230 1 21 36 0 0 chr4 138913779 138913807 -63414540 + AT_rich Low_complexity Low_complexity 1 28 0 23 92 0 0 chr4 138914096 138914161 -63414186 + AT_rich Low_complexity Low_complexity 1 65 0 21 71 0 0 chr4 138914806 138914848 -63413499 + AT_rich Low_complexity Low_complexity 1 42 0 21 82 0 0 chr4 138915356 138915405 -63412942 + AT_rich Low_complexity Low_complexity 1 49 0 1514 183 23 0 chr4 138916058 138916364 -63411983 - L1MB3 LINE L1 0 6183 5871 21 0 0 0 chr4 138916714 138916735 -63411612 + AT_rich Low_complexity Low_complexity 1 21 0 1737 169 69 17 chr4 138917486 138917698 -63410649 + L1PB4 LINE L1 5786 6024 -132 201 39 0 0 chr4 138917698 138917724 -63410623 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 1737 169 69 17 chr4 138917724 138917860 -63410487 + L1PB4 LINE L1 6024 6152 -4 180 0 0 0 chr4 138917877 138917897 -63410450 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 266 293 71 30 chr4 138918545 138918644 -63409703 + L2 LINE L2 3154 3256 -16 1387 227 40 76 chr4 138919408 138919858 -63408489 + MER67D LTR ERV1 45 478 -36 691 146 9 0 chr4 138919858 138919968 -63408379 - FLAM_A SINE Alu -10 132 22 29 28 0 0 chr4 138920142 138920178 -63408169 + AT_rich Low_complexity Low_complexity 1 36 0 246 62 0 0 chr4 138920268 138920300 -63408047 + (TA)n Simple_repeat Simple_repeat 2 33 0 2388 56 0 47 chr4 138920300 138920619 -63407728 - AluY SINE Alu -7 304 1 186 321 36 0 chr4 138921106 138921190 -63407157 + L2 LINE L2 1886 1972 -1342 3907 185 31 56 chr4 138921195 138922352 -63405995 + L1MA9 LINE L1 5093 6223 -89 1793 128 10 28 chr4 138922356 138922575 -63405772 - THE1B LTR MaLR 0 364 150 2333 70 3 13 chr4 138922575 138922875 -63405472 - AluY SINE Alu -14 297 1 1793 128 10 28 chr4 138922875 138922945 -63405402 - THE1B LTR MaLR -214 150 80 * 2146 132 20 28 chr4 138922933 138923289 -63405058 - THE1B LTR MaLR -11 353 1 9634 114 50 36 chr4 138923289 138924842 -63403505 - THE1B-int LTR MaLR 0 1580 6 1016 209 27 18 chr4 138924846 138925113 -63403234 - MLT2A2 LTR ERVL 0 453 282 524 335 40 18 chr4 138925559 138925783 -63402564 - MIR SINE MIR -13 249 21 216 67 0 0 chr4 138925814 138925844 -63402503 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1613 227 24 40 chr4 138925845 138926268 -63402079 + MER31B LTR ERV1 11 426 -40 5149 200 40 4 chr4 138926268 138928387 -63399960 + L1PA16 LINE L1 3957 6156 -10 302 291 81 29 chr4 138928568 138928740 -63399607 + L1ME4a LINE L1 5936 6116 -5 602 200 8 33 chr4 138928911 138929031 -63399316 + MER31B-int LTR ERV1 48 164 -4772 1229 251 81 36 chr4 138929042 138929118 -63399229 + MER31B-int LTR ERV1 367 438 -4498 1334 264 28 3 chr4 138929118 138929474 -63398873 - MLT1A1 LTR MaLR 0 365 1 1229 251 81 36 chr4 138929474 138929755 -63398592 + MER31B-int LTR ERV1 438 740 -4196 * 2204 169 36 7 chr4 138929752 138930201 -63398146 + MER31B-int LTR ERV1 874 1335 -3601 * 8547 209 57 71 chr4 138930199 138933250 -63395097 + MER31B-int LTR ERV1 1460 4469 -467 383 219 248 0 chr4 138933428 138933533 -63394814 + MER31B-int LTR ERV1 4786 4916 -20 1450 194 58 124 chr4 138933533 138933823 -63394524 + MER31A LTR ERV1 1 309 -176 2279 75 0 0 chr4 138933823 138934155 -63394192 - AluY SINE Alu 0 332 1 1450 194 58 124 chr4 138934155 138934173 -63394174 + MER31A LTR ERV1 309 327 -158 1960 119 4 7 chr4 138934173 138934450 -63393897 - AluSx SINE Alu -35 277 2 1450 194 58 124 chr4 138934450 138934499 -63393848 + MER31A LTR ERV1 327 378 -107 384 22 0 0 chr4 138934499 138934544 -63393803 + (TC)n Simple_repeat Simple_repeat 1 45 0 351 0 0 0 chr4 138934543 138934582 -63393765 + (CA)n Simple_repeat Simple_repeat 1 39 0 * 1450 194 58 124 chr4 138934544 138934735 -63393612 + MER31A LTR ERV1 378 481 -4 27 0 0 0 chr4 138934818 138934845 -63393502 + AT_rich Low_complexity Low_complexity 1 27 0 222 62 0 0 chr4 138936496 138936528 -63391819 + (CA)n Simple_repeat Simple_repeat 2 33 0 28 29 0 0 chr4 138936534 138936569 -63391778 + AT_rich Low_complexity Low_complexity 1 35 0 1908 255 25 56 chr4 138938022 138938075 -63390272 - MLT1E2 LTR MaLR -2 624 571 2085 108 3 7 chr4 138938075 138938371 -63389976 + AluSx SINE Alu 12 306 -6 1908 255 25 56 chr4 138938371 138938957 -63389390 - MLT1E2 LTR MaLR -55 571 5 1051 170 19 33 chr4 138939540 138939752 -63388595 + MER3 DNA MER1_type 1 209 0 26 30 0 0 chr4 138941638 138941671 -63386676 + AT_rich Low_complexity Low_complexity 1 33 0 218 195 0 24 chr4 138941766 138941807 -63386540 + L2 LINE L2 3020 3059 -254 46 54 0 0 chr4 138942037 138942111 -63386236 + AT_rich Low_complexity Low_complexity 1 74 0 261 312 118 12 chr4 138942547 138942717 -63385630 - MER46C DNA MER2_type -5 333 146 1550 191 4 11 chr4 138943111 138943388 -63384959 + AluJb SINE Alu 1 275 -37 333 345 97 9 chr4 138943388 138943604 -63384743 - L2 LINE L2 -54 3259 3021 3195 142 34 2 chr4 138944855 138945361 -63382986 - MER1A DNA MER1_type -4 523 2 2076 134 3 6 chr4 138945457 138945771 -63382576 - AluSp SINE Alu 0 313 1 2148 172 20 41 chr4 138946474 138946934 -63381413 + MSTB2 LTR MaLR 4 453 -4 189 0 0 0 chr4 138947159 138947180 -63381167 + (A)n Simple_repeat Simple_repeat 1 21 0 685 286 72 77 chr4 138947561 138947999 -63380348 - MLT1H LTR MaLR -6 543 106 2217 107 3 0 chr4 138947999 138948298 -63380049 + AluSg SINE Alu 1 300 -10 685 286 72 77 chr4 138948298 138948356 -63379991 - MLT1H LTR MaLR -443 106 49 240 342 17 17 chr4 138949308 138949428 -63378919 - MLT1-int LTR MaLR -830 541 422 284 212 18 15 chr4 138949626 138949725 -63378622 - MLT1H1 LTR MaLR 0 555 471 1003 327 12 8 chr4 138949824 138950317 -63378030 - L1M4 LINE L1 -2344 3802 3308 198 71 0 0 chr4 138950351 138950379 -63377968 + (TA)n Simple_repeat Simple_repeat 2 29 0 2172 109 0 0 chr4 138951773 138952066 -63376281 + AluSx SINE Alu 1 293 -19 2087 123 0 43 chr4 138952980 138953125 -63375222 + AluSx SINE Alu 2 152 -160 1814 140 4 4 chr4 138953125 138953404 -63374943 + AluSx SINE Alu 11 289 -23 2087 123 0 43 chr4 138953404 138953583 -63374764 + AluSx SINE Alu 152 312 0 961 231 127 47 chr4 138953645 138953983 -63374364 - MLT1A1 LTR MaLR 0 365 1 289 309 127 46 chr4 138954619 138954926 -63373421 - HAL1 LINE L1 0 2507 2176 373 300 79 26 chr4 138955084 138955274 -63373073 + MLT1J2 LTR MaLR 7 206 -244 300 330 19 0 chr4 138955365 138955468 -63372879 + MLT1J2 LTR MaLR 346 450 0 972 175 42 0 chr4 138956162 138956328 -63372019 + MLT1C LTR MaLR 4 176 -291 553 306 61 18 chr4 138956777 138957006 -63371341 + MLT1J2 LTR MaLR 6 244 -206 243 0 0 0 chr4 138957120 138957147 -63371200 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 450 0 0 0 chr4 138957449 138957499 -63370848 + (TA)n Simple_repeat Simple_repeat 1 50 0 207 0 0 0 chr4 138957831 138957854 -63370493 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 367 364 32 20 chr4 138958047 138958297 -63370050 - HAL1 LINE L1 -982 1525 1273 330 343 164 25 chr4 138959054 138959407 -63368940 + L3 LINE CR1 443 844 -733 253 267 81 23 chr4 138959492 138959578 -63368769 - MIR SINE MIR -55 207 117 192 404 70 0 chr4 138960814 138960970 -63367377 + MIR3 SINE MIR 41 207 -1 2524 158 37 4 chr4 138960979 138961440 -63366907 - MER31A LTR ERV1 0 485 10 403 193 9 18 chr4 138961856 138961965 -63366382 + GA-rich Low_complexity Low_complexity 3 110 0 381 58 0 0 chr4 138961966 138962018 -63366329 + (CAGGG)n Simple_repeat Simple_repeat 4 55 0 429 318 61 53 chr4 138963184 138963448 -63364899 + MLT1L LTR MaLR 1 266 -349 186 94 19 57 chr4 138963529 138963582 -63364765 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 251 113 56 14 chr4 138964196 138964267 -63364080 + (TTCA)n Simple_repeat Simple_repeat 3 76 0 637 243 23 57 chr4 138964542 138964719 -63363628 - MER97a DNA MER1_type? -715 179 9 270 0 0 0 chr4 138965000 138965030 -63363317 + (CA)n Simple_repeat Simple_repeat 2 31 0 2208 56 3 36 chr4 138965302 138965605 -63362742 + AluY SINE Alu 1 293 -18 1568 166 77 34 chr4 139065605 139065955 -63262392 - THE1C LTR MaLR -10 365 1 8977 149 16 38 chr4 139065955 139067570 -63260777 - THE1C-int LTR MaLR 0 1580 3 1542 182 70 31 chr4 139067573 139067931 -63260416 - THE1C LTR MaLR 0 375 4 320 314 65 50 chr4 139067932 139068193 -63260154 + L2 LINE L2 2988 3252 -61 238 345 167 6 chr4 139068278 139068452 -63259895 - MIR SINE MIR -29 233 32 22 56 0 0 chr4 139068811 139068847 -63259500 + AT_rich Low_complexity Low_complexity 1 36 0 3907 180 41 8 chr4 139069571 139070821 -63257526 + L1M2 LINE L1 4492 5785 -506 480 233 19 50 chr4 139071389 139071438 -63256909 - L1MA10 LINE L1 -2 6332 6283 1715 210 5 22 chr4 139071438 139071809 -63256538 - MLT1A1 LTR MaLR 0 365 1 480 233 19 50 chr4 139071809 139071918 -63256429 - L1MA10 LINE L1 -51 6283 6179 1888 138 91 0 chr4 139071993 139072312 -63256035 - MER7A DNA MER2_type 0 346 1 21 36 0 0 chr4 139072899 139072927 -63255420 + AT_rich Low_complexity Low_complexity 1 28 0 423 330 77 30 chr4 139073070 139073306 -63255041 - MIR SINE MIR 0 262 17 1153 235 78 38 chr4 139073448 139073818 -63254529 - MLT1D LTR MaLR 0 505 121 1312 126 10 5 chr4 139073834 139074041 -63254306 - L1PB1 LINE L1 0 6867 6660 6229 217 120 15 chr4 139074142 139076859 -63251488 - L1PB1 LINE L1 -383 6484 3465 2181 226 28 2 chr4 139076940 139077440 -63250907 - L1PB1 LINE L1 -6312 551 39 514 183 0 61 chr4 139077447 139077562 -63250785 - MLT1D LTR MaLR -518 108 1 357 62 0 0 chr4 139078101 139078149 -63250198 + (GA)n Simple_repeat Simple_repeat 1 48 0 284 302 3 22 chr4 139079838 139079977 -63248370 + L1M4c LINE L1 1 1034 -6003 11829 159 25 1 chr4 139080557 139082579 -63245768 - Tigger1 DNA MER2_type 0 2418 349 371 135 67 0 chr4 139082579 139082668 -63245679 + L1MA8 LINE L1 6186 6280 -11 1137 229 32 0 chr4 139082694 139083113 -63245234 + L1MC/D LINE L1 5056 5497 -743 795 257 65 14 chr4 139083116 139083392 -63244955 + L1M4c LINE L1 2160 2449 -4659 1006 252 122 12 chr4 139083637 139084694 -63243653 + L1M4c LINE L1 2625 3728 -3378 1043 214 4 45 chr4 139084709 139084976 -63243371 + L1M4c LINE L1 4532 4787 -2319 189 0 0 0 chr4 139085192 139085213 -63243134 + (TA)n Simple_repeat Simple_repeat 2 22 0 26 30 0 0 chr4 139085217 139085250 -63243097 + AT_rich Low_complexity Low_complexity 1 33 0 225 319 51 51 chr4 139085669 139085807 -63242540 + L2 LINE L2 3014 3151 -162 445 316 6 42 chr4 139086129 139086203 -63242144 - MLT1H1 LTR MaLR -393 162 87 2520 118 6 3 chr4 139086203 139086566 -63241781 + THE1B LTR MaLR 1 364 0 445 316 6 42 chr4 139086566 139086659 -63241688 - MLT1H1 LTR MaLR -468 87 1 239 272 184 29 chr4 139086679 139086782 -63241565 + L2 LINE L2 3187 3305 -8 2152 130 17 8 chr4 139087785 139088139 -63240208 - L1PA13 LINE L1 -1 6162 5806 2128 93 6 26 chr4 139088140 139088385 -63239962 + L1P4 LINE L1 5519 5758 -410 2198 133 13 19 chr4 139088385 139088760 -63239587 - THE1C LTR MaLR 0 375 3 2128 93 6 26 chr4 139088760 139088826 -63239521 + L1P4 LINE L1 5758 5824 -344 1620 159 184 11 chr4 139088929 139089294 -63239053 - MSTA LTR MaLR 0 428 1 186 209 0 0 chr4 139089360 139089403 -63238944 + (TATG)n Simple_repeat Simple_repeat 4 46 0 22 0 0 0 chr4 139090133 139090155 -63238192 + AT_rich Low_complexity Low_complexity 1 22 0 2395 74 0 3 chr4 139090244 139090542 -63237805 + AluY SINE Alu 1 297 -14 357 313 114 81 chr4 139090701 139090973 -63237374 - L2 LINE L2 -13 3259 2979 2090 134 19 45 chr4 139091109 139091483 -63236864 + THE1B LTR MaLR 1 364 0 273 278 42 0 chr4 139091608 139091680 -63236667 - L2 LINE L2 -687 2627 2553 23 0 0 0 chr4 139091760 139091783 -63236564 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 139091848 139091870 -63236477 + AT_rich Low_complexity Low_complexity 1 22 0 2123 117 0 0 chr4 139094375 139094682 -63233665 - AluSx SINE Alu 0 307 1 1014 288 63 35 chr4 139094855 139095317 -63233030 + MLT1G LTR MaLR 1 475 -115 237 348 11 11 chr4 139095670 139095759 -63232588 + LTR40a LTR ERVL 252 340 -179 399 41 0 0 chr4 139095838 139095887 -63232460 + (CA)n Simple_repeat Simple_repeat 2 50 0 1751 240 17 66 chr4 139095910 139096253 -63232094 - LTR55 LTR ERV -1 547 189 2240 131 43 3 chr4 139096253 139096603 -63231744 + THE1B LTR MaLR 1 364 0 1751 240 17 66 chr4 139096603 139096706 -63231641 - LTR55 LTR ERV -359 189 133 1872 156 0 7 chr4 139096706 139096989 -63231358 + AluJb SINE Alu 12 292 -20 1751 240 17 66 chr4 139096989 139097116 -63231231 - LTR55 LTR ERV -415 133 1 967 253 102 67 chr4 139097171 139097661 -63230686 + MLT1G LTR MaLR 82 588 -2 29 0 0 0 chr4 139098906 139098935 -63229412 + AT_rich Low_complexity Low_complexity 1 29 0 25 75 0 0 chr4 139099183 139099236 -63229111 + AT_rich Low_complexity Low_complexity 1 53 0 2113 118 3 3 chr4 139099599 139099896 -63228451 - AluSg SINE Alu -13 297 1 22 56 0 0 chr4 139099987 139100023 -63228324 + AT_rich Low_complexity Low_complexity 1 36 0 894 249 15 23 chr4 139100213 139100478 -63227869 - L1MD2 LINE L1 -155 6204 5942 351 195 9 26 chr4 139100478 139100562 -63227785 + AluJ/FLAM SINE Alu 10 62 -240 1712 207 13 33 chr4 139100564 139100956 -63227391 - L1MD2 LINE L1 -411 5831 5448 3537 121 58 7 chr4 139101053 139101655 -63226692 + LTR24C LTR ERV1 1 633 -2 269 174 0 0 chr4 139101664 139101710 -63226637 + L2 LINE L2 3268 3313 0 331 291 86 8 chr4 139101920 139102037 -63226310 - L2 LINE L2 0 3313 3188 285 259 37 0 chr4 139102059 139102167 -63226180 + (TA)n Simple_repeat Simple_repeat 1 112 0 190 274 106 53 chr4 139102998 139103111 -63225236 + MIR SINE MIR 141 259 -3 463 227 227 0 chr4 139103352 139103484 -63224863 - MER20 DNA MER1_type -57 162 1 36 82 0 0 chr4 139104763 139104848 -63223499 + AT_rich Low_complexity Low_complexity 1 85 0 1131 244 126 23 chr4 139105014 139105446 -63222901 - MER89 LTR ERV1 -2 557 3 206 351 0 0 chr4 139105527 139105601 -63222746 - L2 LINE L2 -5 3308 3235 216 191 0 0 chr4 139106097 139106144 -63222203 + A-rich Low_complexity Low_complexity 6 52 0 333 307 0 18 chr4 139106885 139106996 -63221351 + (TA)n Simple_repeat Simple_repeat 2 112 -49 1917 120 3 34 chr4 139106996 139107315 -63221032 + AluSx SINE Alu 3 312 0 333 307 0 18 chr4 139107315 139107365 -63220982 + (TA)n Simple_repeat Simple_repeat 112 161 0 21 0 0 0 chr4 139107490 139107511 -63220836 + AT_rich Low_complexity Low_complexity 1 21 0 209 145 0 65 chr4 139107628 139107690 -63220657 + (TATAA)n Simple_repeat Simple_repeat 3 60 0 23 0 0 0 chr4 139108807 139108830 -63219517 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 139109100 139109122 -63219225 + AT_rich Low_complexity Low_complexity 1 22 0 1104 273 127 13 chr4 139109191 139109677 -63218670 - MLT1F1 LTR MaLR -10 557 15 868 315 56 59 chr4 139110529 139111237 -63217110 + L2 LINE L2 2602 3309 -4 297 347 54 20 chr4 139112224 139112371 -63215976 + MIR SINE MIR 3 154 -108 361 316 15 15 chr4 139112624 139112760 -63215587 - L2 LINE L2 -250 3063 2928 2103 256 31 57 chr4 139112855 139113312 -63215035 - L1ME1 LINE L1 -5 6161 5736 1361 216 7 20 chr4 139113312 139113608 -63214739 - AluJo SINE Alu -20 292 1 2103 256 31 57 chr4 139113608 139114026 -63214321 - L1ME1 LINE L1 -430 5736 5309 1921 256 31 76 chr4 139114023 139114862 -63213485 - MLT1D-int LTR MaLR -567 804 4 * 1145 264 79 31 chr4 139114865 139115264 -63213083 - MLT1D LTR MaLR 0 505 95 445 145 0 0 chr4 139115284 139115353 -63212994 - AluSp/q SINE Alu -25 288 220 483 235 0 0 chr4 139115353 139115451 -63212896 + L1M2 LINE L1 5605 5702 -610 * 697 230 146 11 chr4 139115450 139115737 -63212610 - L1MEc LINE L1 -4124 2272 1947 333 118 0 0 chr4 139115749 139115800 -63212547 + (TG)n Simple_repeat Simple_repeat 2 52 0 709 280 64 7 chr4 139115800 139116091 -63212256 - L1MEc LINE L1 -4496 1900 1593 680 160 17 8 chr4 139116109 139116228 -63212119 + MER4B LTR ERV1 1 120 -490 1592 135 112 32 chr4 139116469 139116816 -63211531 + THE1C LTR MaLR 1 375 0 754 111 0 0 chr4 139117681 139117789 -63210558 - LTR49 LTR ERV1 -2 593 486 * 1689 158 138 14 chr4 139117788 139118143 -63210204 - MSTA LTR MaLR -29 399 1 2715 139 30 7 chr4 139118154 139118615 -63209732 - LTR49 LTR ERV1 -123 472 1 4917 137 42 14 chr4 139118862 139120116 -63208231 + L1PA16 LINE L1 4868 6157 -9 3898 154 17 2 chr4 139120193 139120835 -63207512 - MER39B LTR ERV1 0 653 2 1525 148 81 73 chr4 139121116 139121325 -63207022 - THE1C LTR MaLR 0 375 159 2204 61 4 4 chr4 139121325 139121649 -63206698 + AluY SINE Alu 2 325 0 1525 148 81 73 chr4 139121649 139121810 -63206537 - THE1C LTR MaLR -216 159 1 875 160 27 53 chr4 139121909 139122128 -63206219 + AluJb SINE Alu 103 316 0 21 57 0 0 chr4 139122207 139122242 -63206105 + AT_rich Low_complexity Low_complexity 1 35 0 1313 208 35 14 chr4 139123177 139123466 -63204881 - AluJo SINE Alu -11 301 7 1085 104 0 0 chr4 139123891 139124045 -63204302 + L1PB1 LINE L1 5997 6150 -1 667 231 50 28 chr4 139125503 139125785 -63202562 + LTR37A LTR ERV1 139 426 0 873 247 0 18 chr4 139126509 139126732 -63201615 + L1M4 LINE L1 3609 3827 -2319 1776 164 17 3 chr4 139127095 139127388 -63200959 - AluJo SINE Alu -13 299 3 219 267 17 0 chr4 139127511 139127571 -63200776 - L2 LINE L2 -968 2346 2286 659 236 94 111 chr4 139127675 139128036 -63200311 + MLT1A1 LTR MaLR 1 355 -10 4521 144 7 4 chr4 139128075 139128775 -63199572 + MER50 LTR ERV1 10 711 -23 2092 183 21 38 chr4 139129224 139129703 -63198644 - LTR29 LTR ERV1 -2 599 160 235 391 93 0 chr4 139129898 139130049 -63198298 - L2 LINE L2 -3 3269 3105 3512 151 31 9 chr4 139130117 139130753 -63197594 - MER39B LTR ERV1 0 653 4 316 413 32 26 chr4 139131532 139131687 -63196660 + MER91A DNA MER1_type 10 165 -31 21 0 0 0 chr4 139131749 139131770 -63196577 + AT_rich Low_complexity Low_complexity 1 21 0 3353 133 35 2 chr4 139132239 139132749 -63195598 - MER1A DNA MER1_type -2 527 1 186 344 33 22 chr4 139133094 139133184 -63195163 - L2 LINE L2 -240 3032 2942 824 238 104 100 chr4 139133425 139134014 -63194333 - LTR49 LTR ERV1 0 595 5 3775 155 25 30 chr4 139134436 139135128 -63193219 - LTR8 LTR ERV1 -3 688 1 184 328 94 0 chr4 139135885 139135949 -63192398 - L2 LINE L2 -5 3308 3239 203 361 25 42 chr4 139136059 139136178 -63192169 - L2 LINE L2 -214 3058 2942 220 391 30 47 chr4 139136318 139136553 -63191794 - L2 LINE L2 -608 2706 2476 450 161 11 23 chr4 139136614 139136701 -63191646 + MER4A LTR ERV1 14 99 -565 1912 131 6 25 chr4 139136701 139137052 -63191295 + MER4A LTR ERV1 262 664 0 2495 81 89 44 chr4 139137055 139137533 -63190814 + MER4A-int LTR ERV1 1 563 -6035 1243 226 79 23 chr4 139137772 139138126 -63190221 + LTR49-int LTR ERV1 1851 2224 -4107 * 5354 111 84 37 chr4 139138125 139139042 -63189305 + LTR49-int LTR ERV1 189 1148 -5610 456 19 0 0 chr4 139139043 139139096 -63189251 + (TG)n Simple_repeat Simple_repeat 2 54 0 3736 90 68 51 chr4 139139105 139139830 -63188517 + LTR49-int LTR ERV1 1759 2495 -4103 1101 205 73 0 chr4 139139830 139140064 -63188283 - LTR8 LTR ERV1 -434 257 7 3745 137 57 65 chr4 139140069 139141023 -63187324 + MER4A-int LTR ERV1 2736 3681 -2917 * 14474 122 58 41 chr4 139141022 139141586 -63186761 + MER4A-int LTR ERV1 3837 4390 -2208 1969 148 0 0 chr4 139141586 139141877 -63186470 + AluSx SINE Alu 1 291 -21 14474 122 58 41 chr4 139141877 139144024 -63184323 + MER4A-int LTR ERV1 4390 6596 -2 673 81 10 20 chr4 139144030 139144129 -63184218 + MER4A LTR ERV1 1 98 -566 1791 161 45 90 chr4 139144129 139144552 -63183795 + MER4A LTR ERV1 261 664 0 195 42 0 0 chr4 139144957 139144981 -63183366 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 699 258 13 0 chr4 139144981 139145136 -63183211 + AluJb SINE Alu 133 289 -23 265 193 37 28 chr4 139145141 139145250 -63183097 + (TA)n Simple_repeat Simple_repeat 1 110 0 292 320 41 14 chr4 139145438 139145585 -63182762 + MLT1J2 LTR MaLR 60 210 -240 1026 252 0 5 chr4 139145777 139145987 -63182360 - MER58A DNA MER1_type -15 209 1 253 208 65 52 chr4 139146389 139146466 -63181881 + MER20 DNA MER1_type 125 202 -17 255 198 0 123 chr4 139146908 139146929 -63181418 + MER3 DNA MER1_type 33 43 -166 298 188 62 0 chr4 139146929 139146993 -63181354 - MER3 DNA MER1_type 0 209 142 1838 173 0 0 chr4 139147065 139147377 -63180970 + AluSx SINE Alu 1 312 0 2183 191 79 19 chr4 139147479 139147946 -63180401 + LTR42 LTR ERVL 1 495 0 21 36 0 0 chr4 139148515 139148543 -63179804 + AT_rich Low_complexity Low_complexity 1 28 0 1876 195 41 0 chr4 139149311 139149675 -63178672 - MSTB1 LTR MaLR -13 419 41 367 215 133 59 chr4 139149734 139149869 -63178478 + L1ME4a LINE L1 5974 6118 -3 1193 161 0 39 chr4 139149876 139150106 -63178241 - AluJo SINE Alu -7 305 85 391 93 0 0 chr4 139150106 139150160 -63178187 - MSTB1 LTR MaLR -378 54 1 27 29 0 0 chr4 139150399 139150433 -63177914 + AT_rich Low_complexity Low_complexity 1 34 0 298 405 73 12 chr4 139150962 139151480 -63176867 - L2 LINE L2 -601 2713 2164 1052 229 84 22 chr4 139151775 139152098 -63176249 - MER2 DNA MER2_type -1 343 1 368 267 20 104 chr4 139152164 139152415 -63175932 - MER112 DNA MER1_type -25 235 6 22 0 0 0 chr4 139152631 139152653 -63175694 + AT_rich Low_complexity Low_complexity 1 22 0 300 277 54 18 chr4 139152690 139152802 -63175545 - L1MC2 LINE L1 -11 6333 6218 14976 163 15 14 chr4 139152803 139157468 -63170879 - L1MA2 LINE L1 0 7723 3051 2078 157 0 0 chr4 139157468 139157780 -63170567 - AluSx SINE Alu 0 312 1 14976 163 15 14 chr4 139157780 139158430 -63169917 - L1MA2 LINE L1 -4672 3051 2403 317 183 0 0 chr4 139158427 139158487 -63169860 - L1M1 LINE L1 -3950 3615 3556 * 797 207 32 38 chr4 139158517 139158588 -63169759 - L1MA2 LINE L1 -1327 6238 6168 2358 84 0 3 chr4 139158588 139158884 -63169463 + AluY SINE Alu 1 295 -16 797 207 32 38 chr4 139158884 139159172 -63169175 - L1MA2 LINE L1 -1397 6168 2272 994 261 0 13 chr4 139159464 139159702 -63168645 + MLT1D LTR MaLR 1 235 -270 938 222 73 44 chr4 139159721 139160036 -63168311 + MLT1D LTR MaLR 178 501 -4 192 179 0 0 chr4 139160203 139160242 -63168105 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2216 86 7 30 chr4 139160619 139160923 -63167424 + AluSp SINE Alu 1 297 -16 28 0 0 0 chr4 139161171 139161199 -63167148 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr4 139161404 139161440 -63166907 + AT_rich Low_complexity Low_complexity 1 36 0 414 325 63 41 chr4 139161632 139161903 -63166444 + LTR16A1 LTR ERVL 65 341 -116 519 327 35 13 chr4 139162030 139162342 -63166005 - L1MCa LINE L1 -2168 4258 3940 1913 141 0 7 chr4 139162467 139162777 -63165570 + AluSx SINE Alu 1 308 0 1328 237 201 34 chr4 139162933 139163490 -63164857 + MLT1E1 LTR MaLR 5 654 0 1218 62 23 0 chr4 139163520 139163696 -63164651 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1220 220 66 25 chr4 139163698 139163984 -63164363 - AluJo SINE Alu -4 298 1 234 330 131 6 chr4 139164158 139164334 -63164013 - L1MCa LINE L1 -3322 3104 2907 1990 161 0 0 chr4 139164451 139164756 -63163591 - AluSx SINE Alu -7 305 1 1014 194 60 32 chr4 139167359 139167455 -63160892 - L1MCa LINE L1 -5252 1174 1082 1929 110 23 42 chr4 139167455 139167763 -63160584 + AluSx SINE Alu 2 303 -9 1014 194 60 32 chr4 139167763 139167918 -63160429 - L1MCa LINE L1 -5344 1082 916 1305 128 5 0 chr4 139168377 139168564 -63159783 + MER51A LTR ERV1 1 188 -446 * 1738 121 8 4 chr4 139168557 139168821 -63159526 + MER51A LTR ERV1 370 634 0 495 0 0 0 chr4 139169178 139169233 -63159114 + (TA)n Simple_repeat Simple_repeat 1 55 0 211 404 72 12 chr4 139170589 139170755 -63157592 + MIR3 SINE MIR 10 185 -23 306 0 0 0 chr4 139171565 139171599 -63156748 + (CA)n Simple_repeat Simple_repeat 2 35 0 351 0 0 0 chr4 139171994 139172033 -63156314 + (TA)n Simple_repeat Simple_repeat 2 40 0 207 331 108 13 chr4 139172447 139172604 -63155743 - MIR SINE MIR -25 237 66 23 33 0 0 chr4 139173576 139173606 -63154741 + AT_rich Low_complexity Low_complexity 1 30 0 1151 210 91 6 chr4 139173637 139173989 -63154358 - Charlie1b DNA MER1_type -7 516 135 229 271 24 12 chr4 139174850 139174935 -63153412 + (TA)n Simple_repeat Simple_repeat 1 86 0 23 54 0 0 chr4 139175026 139175063 -63153284 + AT_rich Low_complexity Low_complexity 1 37 0 387 358 106 21 chr4 139175423 139175800 -63152547 - L2 LINE L2 -661 2653 2245 * 389 304 145 43 chr4 139175767 139175974 -63152373 + MIR SINE MIR 5 232 -30 507 85 0 0 chr4 139176724 139176806 -63151541 + (TTCC)n Simple_repeat Simple_repeat 1 82 0 287 356 147 42 chr4 139176808 139177902 -63150445 - L2 LINE L2 -1887 1427 219 335 465 181 12 chr4 139179619 139180051 -63148296 + L2 LINE L2 2809 3313 0 2014 163 14 3 chr4 139180379 139180740 -63147607 + MLT1A1 LTR MaLR 1 365 0 237 324 103 0 chr4 139181812 139181948 -63146399 + LTR67 LTR ERVL 408 557 0 22 0 0 0 chr4 139182022 139182044 -63146303 + AT_rich Low_complexity Low_complexity 1 22 0 294 149 0 0 chr4 139182190 139182237 -63146110 + MER2 DNA MER2_type 32 78 -267 26 0 0 0 chr4 139182237 139182263 -63146084 + AT_rich Low_complexity Low_complexity 1 26 0 1331 206 95 9 chr4 139182974 139183289 -63145058 - MER2 DNA MER2_type -1 343 2 23 78 0 0 chr4 139183538 139183589 -63144758 + AT_rich Low_complexity Low_complexity 1 51 0 554 345 35 42 chr4 139183949 139184233 -63144114 - L2 LINE L2 -422 2892 2611 189 0 0 0 chr4 139185706 139185727 -63142620 + (T)n Simple_repeat Simple_repeat 1 21 0 26 0 0 0 chr4 139186030 139186056 -63142291 + AT_rich Low_complexity Low_complexity 1 26 0 1880 125 39 99 chr4 139186141 139186525 -63141822 + THE1B LTR MaLR 1 361 -3 7865 142 70 21 chr4 139186528 139186831 -63141516 + THE1B-int LTR MaLR 1 287 -1293 2045 135 0 31 chr4 139186831 139187149 -63141198 + AluSg SINE Alu 1 308 -2 7865 142 70 21 chr4 139187149 139188349 -63139998 + THE1B-int LTR MaLR 287 1579 -1 2013 152 36 33 chr4 139188350 139188713 -63139634 + THE1B LTR MaLR 1 364 0 408 348 94 4 chr4 139189405 139189649 -63138698 + L2 LINE L2 2090 2355 -959 1828 140 7 11 chr4 139190198 139190484 -63137863 + AluSx SINE Alu 1 285 -27 21 0 0 0 chr4 139190484 139190505 -63137842 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr4 139190505 139190529 -63137818 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 218 313 181 38 chr4 139190553 139190713 -63137634 + L2 LINE L2 2660 2842 -472 353 264 124 47 chr4 139190926 139191184 -63137163 + L1MCc LINE L1 95 372 -6051 351 305 11 17 chr4 139191188 139191362 -63136985 + L1M4 LINE L1 3269 3441 -2705 1088 239 36 41 chr4 139191369 139191759 -63136588 + L1ME1 LINE L1 5774 6161 -5 22 0 0 0 chr4 139192231 139192253 -63136094 + AT_rich Low_complexity Low_complexity 1 22 0 21 82 0 0 chr4 139192638 139192687 -63135660 + AT_rich Low_complexity Low_complexity 1 49 0 384 287 73 0 chr4 139192923 139193087 -63135260 - L1 LINE L1 -2213 3933 3758 1876 203 96 5 chr4 139193997 139194416 -63133931 - MSTB2 LTR MaLR 0 457 1 330 327 19 0 chr4 139194665 139194769 -63133578 - MLT1J2 LTR MaLR -274 176 71 51 17 0 0 chr4 139194824 139194882 -63133465 + AT_rich Low_complexity Low_complexity 1 58 0 2288 62 0 50 chr4 139196476 139196797 -63131550 - AluY SINE Alu -6 305 1 275 236 97 21 chr4 139196832 139196958 -63131389 + MLT1J2 LTR MaLR 64 232 -279 846 214 15 15 chr4 139198297 139198493 -63129854 - MER92B LTR ERV1 -9 627 432 294 179 60 0 chr4 139198569 139198636 -63129711 - MER31-int LTR ERV1 -487 4449 4379 355 238 126 40 chr4 139198745 139198896 -63129451 - LTR37A LTR ERV1 -262 164 1 2659 240 77 84 chr4 139198897 139199282 -63129065 - MER31-int LTR ERV1 -682 4254 3868 2726 77 107 5 chr4 139199282 139199685 -63128662 + MLT2A1 LTR ERVL 1 444 0 2659 240 77 84 chr4 139199685 139199921 -63128426 - MER31-int LTR ERV1 -1068 3868 3632 180 0 0 0 chr4 139199921 139199941 -63128406 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 2659 240 77 84 chr4 139199941 139200405 -63127942 - MER31-int LTR ERV1 -1304 3632 3171 1687 258 84 56 chr4 139200942 139202029 -63126318 - MER31-int LTR ERV1 -1870 3066 1950 1501 71 90 0 chr4 139202146 139202358 -63125989 - L1PA7 LINE L1 -4 6150 5920 629 210 6 13 chr4 139202576 139202733 -63125614 - MER31-int LTR ERV1 -3652 1284 1129 2953 232 20 46 chr4 139202753 139203631 -63124716 - MER31-int LTR ERV1 -3642 1294 439 2028 250 50 30 chr4 139204186 139204810 -63123537 - MER92B LTR ERV1 0 636 1 654 140 122 0 chr4 139204920 139205027 -63123320 + 5S rRNA rRNA 1 120 -1 2278 68 7 17 chr4 139206839 139207131 -63121216 + AluY SINE Alu 17 305 -6 200 370 17 25 chr4 139208702 139208821 -63119526 + L2 LINE L2 2915 3032 -240 247 289 114 40 chr4 139208860 139209009 -63119338 + L2 LINE L2 3151 3310 -3 264 342 0 0 chr4 139209013 139209092 -63119255 - L2 LINE L2 -9 3304 3226 316 130 29 0 chr4 139209744 139209813 -63118534 + (TA)n Simple_repeat Simple_repeat 1 71 0 293 314 57 8 chr4 139210296 139210420 -63117927 - MLT1I LTR MaLR -3 406 277 4259 148 35 90 chr4 139210555 139210726 -63117621 - MER4D LTR ERV1 0 903 724 1902 124 4 0 chr4 139210726 139210999 -63117348 + AluSx SINE Alu 32 305 -7 4259 148 35 90 chr4 139210999 139211783 -63116564 - MER4D LTR ERV1 -179 724 1 361 192 30 0 chr4 139212295 139212394 -63115953 + GA-rich Low_complexity Low_complexity 3 104 0 234 217 12 24 chr4 139212545 139212628 -63115719 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 265 257 59 50 chr4 139212694 139212795 -63115552 - MLT2F LTR ERVL -358 305 204 590 182 95 40 chr4 139212879 139213027 -63115320 - MLT1E3 LTR MaLR -418 206 51 466 304 7 0 chr4 139213031 139213169 -63115178 - MLT2F LTR ERVL -517 146 8 607 177 53 0 chr4 139213284 139213397 -63114950 + MER82 DNA MER2_type 33 151 -502 22 35 0 0 chr4 139214164 139214193 -63114154 + AT_rich Low_complexity Low_complexity 1 29 0 1700 266 83 51 chr4 139215158 139215700 -63112647 + L2 LINE L2 1330 1904 -1410 2107 111 0 10 chr4 139215700 139215989 -63112358 + AluSc SINE Alu 6 291 -18 1700 266 83 51 chr4 139215989 139216193 -63112154 + L2 LINE L2 1904 2100 -1214 1310 78 11 21 chr4 139216218 139216409 -63111938 - MER75B DNA T2_type -4 239 51 279 316 43 14 chr4 139267706 139267845 -63060502 - MIR SINE MIR -113 149 7 256 236 22 11 chr4 139268115 139268204 -63060143 + T-rich Low_complexity Low_complexity 2 91 0 615 214 0 29 chr4 139268765 139268938 -63059409 + L1M4 LINE L1 2837 3004 -3142 419 280 0 0 chr4 139268913 139269038 -63059309 + L1M4 LINE L1 5176 5300 -846 * 4630 226 41 72 chr4 139269034 139269223 -63059124 + L1MC3 LINE L1 6186 6379 -1406 2641 37 0 3 chr4 139269223 139269544 -63058803 + L1PA3 LINE L1 5833 6152 -3 4630 226 41 72 chr4 139269544 139270971 -63057376 + L1MC3 LINE L1 6379 7753 -32 203 294 15 0 chr4 139270998 139271066 -63057281 + (TA)n Simple_repeat Simple_repeat 1 69 0 226 130 0 74 chr4 139271068 139271122 -63057225 + L1MC4 LINE L1 6654 6703 -1339 529 177 89 0 chr4 139271187 139271311 -63057036 + L1MA9 LINE L1 6030 6164 -148 778 170 90 27 chr4 139271561 139271749 -63056598 + L1PBa LINE L1 1 200 -6663 9566 118 140 8 chr4 139271751 139273389 -63054958 + L1PBa LINE L1 636 2490 -4373 294 400 32 0 chr4 139273957 139274082 -63054265 - MIR3 SINE MIR -71 137 9 223 303 0 15 chr4 139274107 139274173 -63054174 + L3 LINE CR1 1507 1571 -6 24 100 0 0 chr4 139274231 139274311 -63054036 + AT_rich Low_complexity Low_complexity 1 80 0 662 211 80 11 chr4 139275219 139275394 -63052953 + MLT1A2 LTR MaLR 1 187 -203 375 132 0 0 chr4 139275399 139275467 -63052880 + (TC)n Simple_repeat Simple_repeat 2 69 0 804 263 5 5 chr4 139275489 139275675 -63052672 + MLT1A2 LTR MaLR 189 374 0 23 54 0 0 chr4 139276108 139276145 -63052202 + AT_rich Low_complexity Low_complexity 1 37 0 40 0 0 0 chr4 139276637 139276677 -63051670 + AT_rich Low_complexity Low_complexity 1 40 0 241 69 0 0 chr4 139277239 139277268 -63051079 + (A)n Simple_repeat Simple_repeat 1 29 0 2131 59 0 75 chr4 139277282 139277602 -63050745 + AluY SINE Alu 2 297 -14 22 35 0 0 chr4 139278049 139278078 -63050269 + AT_rich Low_complexity Low_complexity 1 29 0 272 234 13 13 chr4 139278842 139278919 -63049428 + (TA)n Simple_repeat Simple_repeat 1 77 0 559 309 42 86 chr4 139279436 139279912 -63048435 + L2 LINE L2 1403 1857 -1457 408 287 30 67 chr4 139279917 139280081 -63048266 + MER63 DNA MER1_type 3 786 -50 940 295 50 19 chr4 139280172 139280548 -63047799 + L2 LINE L2 1829 2216 -1098 198 292 15 0 chr4 139280601 139280666 -63047681 + L2 LINE L2 2239 2304 -1010 3232 175 51 23 chr4 139280668 139281076 -63047271 - MER67C LTR ERV1 0 710 274 7454 92 10 15 chr4 139281076 139282152 -63046195 - MER11C LTR ERVK 0 1071 1 3232 175 51 23 chr4 139282152 139282434 -63045913 - MER67C LTR ERV1 -436 274 1 592 262 53 5 chr4 139283117 139283295 -63045052 - L1MA8 LINE L1 -1 6290 6101 1067 178 67 18 chr4 139283295 139283520 -63044827 - MER46A DNA MER2_type 0 236 1 1213 270 30 38 chr4 139283667 139284063 -63044284 - MSTD LTR MaLR 0 396 4 2512 151 26 2 chr4 139284352 139284770 -63043577 - MSTA LTR MaLR 0 428 1 706 274 107 46 chr4 139285175 139285548 -63042799 + MSTD LTR MaLR 1 396 0 342 0 0 0 chr4 139285913 139285951 -63042396 + (TG)n Simple_repeat Simple_repeat 1 38 0 5081 201 37 21 chr4 139286327 139287371 -63040976 - L1MC1 LINE L1 -1 6332 5259 963 50 0 0 chr4 139287371 139287492 -63040855 + (TA)n Simple_repeat Simple_repeat 2 122 0 5081 201 37 21 chr4 139287492 139287870 -63040477 - L1MC1 LINE L1 -1074 5259 4888 2017 132 0 49 chr4 139288076 139288402 -63039945 + AluSx SINE Alu 1 310 -2 2069 140 3 0 chr4 139288786 139289094 -63039253 - AluSx SINE Alu -3 309 1 21 57 0 0 chr4 139289482 139289517 -63038830 + AT_rich Low_complexity Low_complexity 1 35 0 381 102 0 0 chr4 139290519 139290578 -63037769 + (TG)n Simple_repeat Simple_repeat 1 59 0 44 20 0 0 chr4 139290739 139290790 -63037557 + AT_rich Low_complexity Low_complexity 1 51 0 610 348 51 22 chr4 139291739 139292041 -63036306 - LTR16A LTR ERVL -2 455 132 2247 196 33 47 chr4 139292202 139292718 -63035629 - MER67D LTR ERV1 -5 509 1 8709 33 4 0 chr4 139293114 139294924 -63033423 - L1PA4 LINE L1 -3 6152 4331 586 152 0 10 chr4 139295037 139295136 -63033211 - AluSg/x SINE Alu -7 302 205 1656 190 29 0 chr4 139295296 139295570 -63032777 + AluJb SINE Alu 7 288 -24 687 374 28 22 chr4 139295624 139296087 -63032260 - HERVL LTR ERVL -1098 4556 4091 661 324 60 16 chr4 139296362 139296726 -63031621 + L1PB4 LINE L1 17 396 -6453 1640 267 39 44 chr4 139297185 139298220 -63030127 + L1PB4 LINE L1 782 2019 -4831 * 5567 219 31 139 chr4 139298193 139300762 -63027585 + L1PB4 LINE L1 2387 4585 -2264 1628 228 7 0 chr4 139300762 139301069 -63027278 + AluJb SINE Alu 1 309 -3 5567 219 31 139 chr4 139301069 139301421 -63026926 + L1PB4 LINE L1 4585 4973 -1876 * 27567 126 15 17 chr4 139301409 139306960 -63021387 + L1PA8 LINE L1 641 6171 -1 392 179 13 0 chr4 139306957 139307035 -63021312 + L1M3 LINE L1 5366 5444 -736 * 4543 178 57 36 chr4 139307047 139308050 -63020297 + L1PB4 LINE L1 4946 6005 -854 351 78 0 0 chr4 139308050 139308101 -63020246 + (CAA)n Simple_repeat Simple_repeat 1 51 0 4543 178 57 36 chr4 139308101 139308965 -63019382 + L1PB4 LINE L1 6005 6849 -10 569 370 52 14 chr4 139309014 139309460 -63018887 - HERVL LTR ERVL -1925 3839 3377 394 363 10 10 chr4 139309569 139309773 -63018574 - HERVL LTR ERVL -2468 3186 2983 494 112 9 112 chr4 139311737 139311844 -63016503 - MLT1E2 LTR MaLR -530 96 1 1860 148 41 52 chr4 139312354 139312718 -63015629 + THE1B LTR MaLR 1 360 -4 27 62 0 0 chr4 139312769 139312817 -63015530 + AT_rich Low_complexity Low_complexity 1 48 0 427 109 16 0 chr4 139312973 139313037 -63015310 + THE1B LTR MaLR 300 364 0 21 36 0 0 chr4 139313194 139313222 -63015125 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr4 139313233 139313254 -63015093 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 1506 158 51 8 chr4 139313316 139313570 -63014777 + AluJb SINE Alu 6 270 -42 226 299 92 11 chr4 139313952 139314039 -63014308 + MIR SINE MIR 48 141 -121 21 0 0 0 chr4 139314225 139314246 -63014101 + AT_rich Low_complexity Low_complexity 1 21 0 1604 302 73 80 chr4 139314451 139315626 -63012721 + L2 LINE L2 1316 2484 -830 1767 135 0 11 chr4 139315626 139315886 -63012461 - AluSx SINE Alu -17 295 39 1604 302 73 80 chr4 139315886 139315990 -63012357 + L2 LINE L2 2484 2587 -727 253 297 59 0 chr4 139316049 139316150 -63012197 + Ricksha DNA DNA 239 345 -1701 645 301 22 73 chr4 139316151 139316442 -63011905 + MLT2E LTR ERVL 2 277 -351 216 67 0 0 chr4 139316813 139316843 -63011504 + (GA)n Simple_repeat Simple_repeat 1 30 0 1397 220 13 10 chr4 139317143 139317443 -63010904 + AluJo SINE Alu 1 301 -11 2251 82 3 19 chr4 139317452 139317770 -63010577 - AluSp SINE Alu 0 313 1 208 329 0 0 chr4 139318070 139318140 -63010207 + (TA)n Simple_repeat Simple_repeat 1 70 0 258 236 162 47 chr4 139318981 139319129 -63009218 - MIR SINE MIR -41 221 57 27 49 0 0 chr4 139319668 139319709 -63008638 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr4 139319855 139319876 -63008471 + AT_rich Low_complexity Low_complexity 1 21 0 655 175 8 0 chr4 139319934 139320054 -63008293 - AluJo SINE Alu -2 310 190 196 329 66 29 chr4 139320808 139320945 -63007402 + MIR SINE MIR 1 142 -120 1846 192 63 15 chr4 139321531 139321943 -63006404 + MSTB1 LTR MaLR 1 432 0 181 264 132 0 chr4 139323349 139323402 -63004945 - MIR SINE MIR -147 115 56 273 186 0 0 chr4 139326669 139326712 -63001635 - LTR33 LTR ERVL -2 519 477 489 321 41 32 chr4 139326887 139327045 -63001302 - LTR33 LTR ERVL -301 220 58 1947 154 118 20 chr4 139327045 139327435 -63000912 + MSTA LTR MaLR 1 428 0 489 321 41 32 chr4 139327435 139327494 -63000853 - LTR33 LTR ERVL -463 58 1 198 0 0 0 chr4 139327629 139327651 -63000696 + (CA)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr4 139327721 139327743 -63000604 + AT_rich Low_complexity Low_complexity 1 22 0 2770 149 123 14 chr4 139327905 139328456 -62999891 + LTR36 LTR ERV1 1 611 0 24 0 0 0 chr4 139329152 139329176 -62999171 + AT_rich Low_complexity Low_complexity 1 24 0 339 374 35 6 chr4 139329359 139329530 -62998817 - MIR SINE MIR -71 191 16 29 28 0 0 chr4 139329838 139329874 -62998473 + AT_rich Low_complexity Low_complexity 1 36 0 300 327 45 9 chr4 139329976 139330086 -62998261 + MIR SINE MIR 52 165 -97 279 0 0 0 chr4 139330192 139330223 -62998124 + (A)n Simple_repeat Simple_repeat 1 31 0 943 220 3 75 chr4 139330238 139330556 -62997791 + AluY SINE Alu 3 297 -4 26 0 0 0 chr4 139330561 139330587 -62997760 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr4 139330732 139330756 -62997591 + AT_rich Low_complexity Low_complexity 1 24 0 1303 126 0 0 chr4 139330887 139331077 -62997270 + AluSg/x SINE Alu 121 310 -2 21 57 0 0 chr4 139331324 139331359 -62996988 + AT_rich Low_complexity Low_complexity 1 35 0 1161 129 5 21 chr4 139331521 139331707 -62996640 - AluJo SINE Alu -129 183 1 243 0 0 0 chr4 139332049 139332076 -62996271 + (TG)n Simple_repeat Simple_repeat 2 28 0 26 50 0 0 chr4 139332159 139332199 -62996148 + AT_rich Low_complexity Low_complexity 1 40 0 26 0 0 0 chr4 139333107 139333133 -62995214 + AT_rich Low_complexity Low_complexity 1 26 0 3082 198 52 8 chr4 139334126 139334758 -62993589 - MER67C LTR ERV1 -50 660 1 1302 306 89 45 chr4 139334763 139335694 -62992653 + L2 LINE L2 2333 3313 0 28 29 0 0 chr4 139335736 139335771 -62992576 + AT_rich Low_complexity Low_complexity 1 35 0 39 50 0 0 chr4 139336895 139336955 -62991392 + AT_rich Low_complexity Low_complexity 1 60 0 28 48 0 0 chr4 139337089 139337131 -62991216 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr4 139338768 139338789 -62989558 + AT_rich Low_complexity Low_complexity 1 21 0 3667 175 77 39 chr4 139339375 139340240 -62988107 - MER4D LTR ERV1 0 830 1 1359 138 5 0 chr4 139340455 139340665 -62987682 - L1PB4 LINE L1 0 6156 5946 228 229 8 90 chr4 139340992 139341114 -62987233 + L1M4 LINE L1 2210 2321 -3825 315 0 0 0 chr4 139341114 139341149 -62987198 + (CA)n Simple_repeat Simple_repeat 2 36 0 401 340 142 0 chr4 139341431 139341628 -62986719 - L2 LINE L2 -269 3044 2820 483 256 36 77 chr4 139341648 139341843 -62986504 - L2 LINE L2 -1459 1855 1669 370 269 13 6 chr4 139342362 139342518 -62985829 + (TATATG)n Simple_repeat Simple_repeat 2 158 0 189 0 0 0 chr4 139342845 139342866 -62985481 + (TTA)n Simple_repeat Simple_repeat 1 21 0 1833 198 53 18 chr4 139342866 139343260 -62985087 + LOR1b LTR ERV1 54 461 0 2204 163 73 11 chr4 139343260 139343989 -62984358 + LOR1b-int LTR ERV1 1 608 -7512 820 246 26 10 chr4 139344148 139344343 -62984004 - HERVL40 LTR ERVL -766 4764 4567 196 254 95 0 chr4 139344344 139344407 -62983940 - MER5C DNA MER1_type -178 146 78 900 335 23 13 chr4 139344407 139344804 -62983543 - HERVL40 LTR ERVL -1027 4503 4103 486 302 95 17 chr4 139344958 139345137 -62983210 - HERVL40 LTR ERVL -2643 2887 2695 406 315 64 40 chr4 139345315 139345566 -62982781 - HERVL40 LTR ERVL -3928 1602 1346 1711 144 64 25 chr4 139346378 139346739 -62981608 - THE1C LTR MaLR 0 375 1 9720 133 38 8 chr4 139346743 139348271 -62980076 - THE1C-int LTR MaLR -6 1574 1 1638 158 57 33 chr4 139348271 139348637 -62979710 - THE1C LTR MaLR 0 375 1 1220 272 62 8 chr4 139348637 139348990 -62979357 - LTR40c LTR ERVL -40 425 54 302 276 9 0 chr4 139349226 139349331 -62979016 + (TA)n Simple_repeat Simple_repeat 2 107 0 31 0 0 0 chr4 139349385 139349416 -62978931 + AT_rich Low_complexity Low_complexity 1 31 0 2089 115 0 0 chr4 139350727 139351013 -62977334 + AluSc SINE Alu 9 294 -15 432 0 0 0 chr4 139351042 139351090 -62977257 + (TG)n Simple_repeat Simple_repeat 2 49 0 183 129 0 0 chr4 139351279 139351310 -62977037 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 435 253 7 58 chr4 139351558 139351712 -62976635 + MER69A DNA AcHobo 19 164 -13 327 281 152 6 chr4 139352406 139352570 -62975777 + MIR SINE MIR 75 262 0 23 54 0 0 chr4 139353970 139354007 -62974340 + AT_rich Low_complexity Low_complexity 1 37 0 7409 37 8 0 chr4 139354884 139356341 -62972006 - L1PA5 LINE L1 -7 6147 4685 3825 42 4 0 chr4 139356341 139356823 -62971524 + L1PA5 LINE L1 4226 4709 -1437 352 339 151 5 chr4 139357126 139357312 -62971035 + MIR SINE MIR 49 261 -1 228 228 0 0 chr4 139357344 139357401 -62970946 + (TAG)n Simple_repeat Simple_repeat 1 57 0 2028 127 50 9 chr4 139357695 139358018 -62970329 - MER1B DNA MER1_type -1 336 1 691 289 50 58 chr4 139359602 139359982 -62968365 + L2 LINE L2 2359 2735 -579 1961 125 0 4 chr4 139360141 139360453 -62967894 - AluSc SINE Alu 0 311 1 240 281 37 24 chr4 139361458 139361540 -62966807 - L2 LINE L2 0 3313 3231 1401 181 79 60 chr4 139362189 139362570 -62965777 + MLT1B LTR MaLR 1 388 -2 218 289 75 50 chr4 139364382 139364541 -62963806 + L2 LINE L2 1922 2084 -1230 250 309 25 80 chr4 139364639 139364801 -62963546 + L2 LINE L2 2565 2717 -597 482 294 62 52 chr4 139365081 139365387 -62962960 + L2 LINE L2 3005 3313 0 267 353 128 16 chr4 139365915 139366102 -62962245 + L2 LINE L2 2852 3059 -213 226 378 0 0 chr4 139366224 139366322 -62962025 + L2 LINE L2 3174 3271 -1 22 56 0 0 chr4 139366537 139366573 -62961774 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 139366629 139366651 -62961696 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr4 139367012 139367041 -62961306 + AT_rich Low_complexity Low_complexity 1 29 0 419 332 53 21 chr4 139367280 139367467 -62960880 + MIR SINE MIR 70 262 0 22 0 0 0 chr4 139367770 139367792 -62960555 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr4 139367848 139367884 -62960463 + AT_rich Low_complexity Low_complexity 1 36 0 189 147 0 0 chr4 139369720 139369754 -62958593 + (ATG)n Simple_repeat Simple_repeat 2 35 0 1906 146 0 0 chr4 139369817 139370105 -62958242 + AluSx SINE Alu 24 311 -1 1161 246 57 17 chr4 139371371 139371773 -62956574 - LTR52 LTR ERVL -3 418 1 309 301 90 15 chr4 139371818 139371951 -62956396 - MER91A DNA MER1_type -36 160 18 1316 260 26 33 chr4 139371969 139372358 -62955989 + HERVL40 LTR ERVL 19 404 -5126 453 307 26 13 chr4 139372386 139372539 -62955808 + HERVL40 LTR ERVL 400 554 -4976 1205 196 125 18 chr4 139372669 139372949 -62955398 + AluJb SINE Alu 1 310 -2 1865 166 14 1 chr4 139372958 139373412 -62954935 + L1PA16 LINE L1 5106 5567 -599 7475 34 0 8 chr4 139373437 139374614 -62953733 + L1PA3 LINE L1 4985 6155 0 22 35 0 0 chr4 139374627 139374656 -62953691 + AT_rich Low_complexity Low_complexity 1 29 0 2948 164 9 20 chr4 139374688 139375244 -62953103 + L1PA16 LINE L1 5616 6165 -1 1358 322 62 52 chr4 139375287 139376126 -62952221 + HERVL40 LTR ERVL 635 1481 -4049 3727 180 113 178 chr4 139376133 139377795 -62950552 + MER52A LTR ERV1 1 1553 -202 278 248 30 40 chr4 139377817 139377918 -62950429 - LTR27 LTR ERV1 -273 363 264 348 321 9 9 chr4 139377952 139378064 -62950283 - LTR28 LTR ERV1 -841 179 68 * 497 134 0 12 chr4 139378059 139378141 -62950206 + MER52A LTR ERV1 1553 1633 -122 817 202 77 0 chr4 139378142 139378310 -62950037 + MER52A LTR ERV1 1575 1755 0 276 256 41 58 chr4 139378318 139378439 -62949908 + HERVL40 LTR ERVL 1495 1613 -3917 560 226 44 37 chr4 139378850 139379093 -62949254 - MER52A LTR ERV1 -147 895 278 702 255 8 3 chr4 139379143 139379322 -62949025 - MER52A LTR ERV1 -841 800 1 611 284 99 19 chr4 139379342 139379553 -62948794 + HERVL40 LTR ERVL 1936 2163 -3367 1149 177 67 95 chr4 139379598 139379914 -62948433 + LTR39 LTR ERV1 1 307 -476 658 264 75 0 chr4 139379982 139380156 -62948191 + LTR39 LTR ERV1 597 783 0 373 263 36 59 chr4 139380156 139380497 -62947850 - L1M4 LINE L1 -1390 4756 4368 180 77 0 0 chr4 139380501 139380527 -62947820 + (TGGG)n Simple_repeat Simple_repeat 3 28 0 2766 196 45 40 chr4 139380574 139381267 -62947080 - L1MB1 LINE L1 0 6168 5473 * 4771 135 65 7 chr4 139381254 139382135 -62946212 - L1PA16 LINE L1 0 6166 5235 1862 140 60 30 chr4 139382135 139382499 -62945848 + THE1C LTR MaLR 1 375 0 2705 121 29 3 chr4 139382499 139382969 -62945378 + THE1C-int LTR MaLR 1 480 -1150 * 6039 231 42 10 chr4 139382968 139384609 -62943738 - L1MB1 LINE L1 -1377 4769 3077 511 247 19 19 chr4 139384611 139384765 -62943582 - L1PA15-16 LINE L1 -4612 2237 2084 435 38 0 0 chr4 139384887 139384940 -62943407 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 186 43 0 0 chr4 139384940 139384963 -62943384 + (CATA)n Simple_repeat Simple_repeat 1 23 0 25 31 0 0 chr4 139385351 139385383 -62942964 + AT_rich Low_complexity Low_complexity 1 32 0 1824 201 32 35 chr4 139385625 139386057 -62942290 + Tigger2a DNA MER2_type 4 434 0 22 70 0 0 chr4 139388161 139388204 -62940143 + AT_rich Low_complexity Low_complexity 1 43 0 345 47 0 0 chr4 139389880 139389923 -62938424 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 36 0 0 chr4 139390275 139390303 -62938044 + AT_rich Low_complexity Low_complexity 1 28 0 2110 87 21 3 chr4 139390422 139390708 -62937639 + AluSc SINE Alu 1 291 -18 1580 214 49 30 chr4 139390868 139391274 -62937073 + MLT2D LTR ERVL 1 414 0 11570 216 46 38 chr4 139391274 139394067 -62934280 + ERVL-D LTR ERVL 1 2945 -2819 298 122 0 0 chr4 139394067 139394116 -62934231 + MADE1 DNA Mariner 1 49 -31 11570 216 46 38 chr4 139394116 139394502 -62933845 + ERVL-D LTR ERVL 2945 3326 -2438 26 64 0 0 chr4 139394506 139394553 -62933794 + AT_rich Low_complexity Low_complexity 1 47 0 4205 180 38 54 chr4 139394556 139395571 -62932776 - L1MA8 LINE L1 -11 6280 5282 1892 214 22 99 chr4 139395570 139396195 -62932152 - L1M3e LINE L1 -6447 583 7 * 9935 200 53 10 chr4 139396210 139398195 -62930152 + ERVL-D LTR ERVL 3353 5423 -341 375 23 0 0 chr4 139398205 139398249 -62930098 + (CA)n Simple_repeat Simple_repeat 1 44 0 331 333 16 8 chr4 139398249 139398372 -62929975 - HERVL40 LTR ERVL -1823 3707 3584 362 246 31 46 chr4 139398381 139398511 -62929836 - HERVL40 LTR ERVL -2190 3340 3213 1326 239 69 34 chr4 139398702 139398729 -62929618 - HERVL40 LTR ERVL -2005 1032 1007 1572 174 60 30 chr4 139398729 139399028 -62929319 - AluJo SINE Alu -4 308 1 1326 239 69 34 chr4 139399028 139399415 -62928932 - HERVL40 LTR ERVL -2030 1007 897 729 305 64 4 chr4 139399489 139399722 -62928625 - HERVL40 LTR ERVL -3233 2297 2051 439 290 13 26 chr4 139399727 139399882 -62928465 - HERVL40 LTR ERVL -3918 1612 1460 280 304 118 27 chr4 139400111 139400308 -62928039 + LTR40a LTR ERVL 232 460 -59 809 49 31 31 chr4 139400308 139400470 -62927877 + (TCTA)n Simple_repeat Simple_repeat 1 162 0 280 304 118 27 chr4 139400470 139400535 -62927812 + LTR40a LTR ERVL 460 518 -1 396 125 0 2 chr4 139400614 139400676 -62927671 - HERVL40 LTR ERVL -672 5013 4922 350 341 0 0 chr4 139400691 139400776 -62927571 - HERVL40 LTR ERVL -4165 1365 1281 404 169 0 13 chr4 139401217 139401294 -62927053 + L1MB1 LINE L1 6096 6171 -18 229 271 32 77 chr4 139401858 139402013 -62926334 - L1ME LINE L1 -451 5670 5523 27 29 0 0 chr4 139402253 139402287 -62926060 + AT_rich Low_complexity Low_complexity 1 34 0 4536 71 47 3 chr4 139402455 139403077 -62925270 + L1PA8 LINE L1 5517 6165 -7 937 267 23 16 chr4 139405553 139405860 -62922487 - L1ME2 LINE L1 -8 6156 5848 334 303 97 40 chr4 139406684 139406912 -62921435 + L1MC4a LINE L1 2671 2911 -3235 616 243 117 18 chr4 139406914 139407136 -62921211 + L1MC4a LINE L1 5539 5782 -2026 2420 90 122 5 chr4 139407140 139407541 -62920806 + LTR7 LTR ERV1 1 448 -2 19736 91 28 18 chr4 139407543 139410504 -62917843 + HERVH LTR ERV1 1 2992 -4721 5866 102 3 2 chr4 139410490 139411343 -62917004 + HERVH LTR ERV1 3140 3993 -3720 * 4219 163 0 1 chr4 139411345 139412008 -62916339 + HERVH LTR ERV1 4488 5149 -2564 1270 136 28 0 chr4 139412009 139412223 -62916124 + HERVH LTR ERV1 5600 5819 -1894 2336 106 48 13 chr4 139412223 139412600 -62915747 + HERVH LTR ERV1 7324 7713 0 2466 73 128 5 chr4 139412600 139412999 -62915348 + LTR7 LTR ERV1 1 448 -2 1561 236 101 86 chr4 139413006 139413968 -62914379 + L1MC4a LINE L1 5781 6756 -1052 1347 273 131 22 chr4 139413975 139414565 -62913782 + L1MC4a LINE L1 7154 7807 -1 23 0 0 0 chr4 139414566 139414589 -62913758 + AT_rich Low_complexity Low_complexity 1 23 0 661 314 45 104 chr4 139414801 139415442 -62912905 + L2 LINE L2 2295 2897 -417 314 293 30 53 chr4 139415627 139415652 -62912695 + L2 LINE L2 3180 3204 -109 1680 198 61 34 chr4 139415652 139416097 -62912250 + MSTB2 LTR MaLR 1 457 0 314 293 30 53 chr4 139416097 139416204 -62912143 + L2 LINE L2 3204 3309 -4 2687 149 14 22 chr4 139416216 139416660 -62911687 + L1P3 LINE L1 1 440 -6021 6665 62 15 3 chr4 139416661 139418144 -62910203 + L1PA7 LINE L1 4651 6143 -11 477 176 8 16 chr4 139418153 139418278 -62910069 + GA-rich Low_complexity Low_complexity 3 126 0 2822 16 0 0 chr4 139418936 139419251 -62909096 - AluYb8 SINE Alu -3 315 1 2396 71 0 0 chr4 139420703 139421013 -62907334 - AluY SINE Alu -1 310 1 22 0 0 0 chr4 139421179 139421201 -62907146 + AT_rich Low_complexity Low_complexity 1 22 0 5992 113 4 13 chr4 139421610 139422201 -62906146 - L1PB1 LINE L1 -5 6146 5565 3502 148 37 93 chr4 139422201 139423032 -62905315 + LTR1 LTR ERV1 1 785 0 5992 113 4 13 chr4 139423032 139423420 -62904927 - L1PB1 LINE L1 -586 5565 5175 208 271 104 52 chr4 139424203 139424299 -62904048 + L2 LINE L2 3171 3271 -1 23 0 0 0 chr4 139424418 139424441 -62903906 + AT_rich Low_complexity Low_complexity 1 23 0 1055 265 164 48 chr4 139424538 139425081 -62903266 - MLT1E2 LTR MaLR -10 616 11 21 0 0 0 chr4 139425742 139425763 -62902584 + AT_rich Low_complexity Low_complexity 1 21 0 1251 227 73 51 chr4 139425901 139426395 -62901952 + L1M4 LINE L1 4224 4728 -1418 364 363 47 26 chr4 139428079 139428313 -62900034 + MIR SINE MIR 23 261 -1 372 59 0 0 chr4 139429071 139429122 -62899225 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 303 28 0 0 chr4 139429541 139429577 -62898770 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 403 234 97 21 chr4 139429662 139429807 -62898540 - LTR52 LTR ERVL -265 156 1 1936 114 10 42 chr4 139429980 139430288 -62898059 - AluSp SINE Alu -14 299 2 27 29 0 0 chr4 139430478 139430512 -62897835 + AT_rich Low_complexity Low_complexity 1 34 0 702 328 98 18 chr4 139431117 139431514 -62896833 + L2 LINE L2 1533 1961 -1353 2349 82 0 0 chr4 139431519 139431822 -62896525 + AluY SINE Alu 1 303 -8 315 116 0 0 chr4 139432281 139432324 -62896023 + MLT1B LTR MaLR 3 45 -345 1346 263 48 12 chr4 139432324 139432743 -62895604 - MER57B LTR ERV1 0 434 1 25 0 0 0 chr4 139433576 139433601 -62894746 + AT_rich Low_complexity Low_complexity 1 25 0 321 151 19 9 chr4 139434281 139434387 -62893960 + (TA)n Simple_repeat Simple_repeat 1 107 0 387 294 39 65 chr4 139434753 139435032 -62893315 - PRIMA41-int LTR ERV1 -1671 2976 2705 2555 139 114 21 chr4 139435599 139436115 -62892232 + LTR6A LTR ERV1 1 564 0 1178 298 19 35 chr4 139436147 139436633 -62891714 - PRIMA41-int LTR ERV1 -1775 5762 5285 2162 126 0 7 chr4 139437631 139437940 -62890407 + AluSq SINE Alu 7 313 0 11300 239 32 19 chr4 139438507 139438610 -62889737 - L1PB4 LINE L1 -13 6845 6745 2458 149 41 5 chr4 139438610 139439025 -62889322 - MER61C LTR ERV1 -4 430 1 11300 239 32 19 chr4 139439025 139439179 -62889168 - L1PB4 LINE L1 -113 6745 6595 189 0 0 0 chr4 139439179 139439200 -62889147 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 11300 239 32 19 chr4 139439200 139442123 -62886224 - L1PB4 LINE L1 -263 6595 3712 1836 166 6 19 chr4 139442123 139442436 -62885911 - AluSx SINE Alu -3 309 1 11300 239 32 19 chr4 139442436 139443868 -62884479 - L1PB4 LINE L1 -3146 3712 2195 2385 166 22 0 chr4 139443868 139444285 -62884062 - MSTA LTR MaLR -2 426 1 11300 239 32 19 chr4 139444285 139445450 -62882897 - L1PB4 LINE L1 -4663 2195 1047 523 351 72 57 chr4 139446099 139446629 -62881718 - L1PB4 LINE L1 -6302 547 10 332 260 0 31 chr4 139446634 139446730 -62881617 - PRIMA41-int LTR ERV1 -4360 3396 3304 3124 150 17 2 chr4 139447391 139447917 -62880430 + L1PA16 LINE L1 5622 6155 -11 1157 216 32 32 chr4 139450124 139450402 -62877945 + AluJb SINE Alu 15 292 -20 24 0 0 0 chr4 139451155 139451179 -62877168 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 139451330 139451358 -62876989 + AT_rich Low_complexity Low_complexity 1 28 0 1106 259 201 23 chr4 139451411 139451848 -62876499 - MER101B LTR ERV1 -32 538 24 249 275 76 70 chr4 139451921 139452092 -62876255 - MER89 LTR ERV1 -37 522 351 1334 59 0 0 chr4 139452521 139452690 -62875657 - L1PA4 LINE L1 -3 6152 5984 943 18 0 9 chr4 139452690 139452803 -62875544 + L1PA4 LINE L1 5764 5875 -280 23 0 0 0 chr4 139452920 139452943 -62875404 + AT_rich Low_complexity Low_complexity 1 23 0 42 20 0 0 chr4 139453360 139453409 -62874938 + AT_rich Low_complexity Low_complexity 1 49 0 2064 110 3 14 chr4 139453491 139453781 -62874566 + AluSx SINE Alu 1 287 -25 198 0 0 0 chr4 139453781 139453803 -62874544 + (TA)n Simple_repeat Simple_repeat 2 23 0 8697 204 28 17 chr4 139453865 139457027 -62871320 - L1PA16 LINE L1 -2 6164 2952 582 317 110 34 chr4 139457758 139458231 -62870116 + HAL1 LINE L1 917 1425 -1082 603 164 8 23 chr4 139458231 139458359 -62869988 + L1PB4 LINE L1 6030 6155 -1 259 321 0 0 chr4 139458392 139458473 -62869874 + (TA)n Simple_repeat Simple_repeat 1 81 0 21 57 0 0 chr4 139458587 139458622 -62869725 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr4 139458676 139458706 -62869641 + AT_rich Low_complexity Low_complexity 1 30 0 184 237 92 53 chr4 139459923 139459999 -62868348 - MER5B DNA MER1_type -27 151 73 2591 173 59 4 chr4 139460035 139460560 -62867787 - L1MC1 LINE L1 -18 6315 5762 840 231 11 73 chr4 139460586 139460859 -62867488 + L1M4 LINE L1 4590 4845 -1301 3477 227 21 37 chr4 139460871 139462537 -62865810 - L1MC1 LINE L1 -559 5785 4159 231 297 0 14 chr4 139462560 139462634 -62865713 - L1MC1 LINE L1 -1981 4165 4093 489 195 0 0 chr4 139462636 139462723 -62865624 + AluJ/FLAM SINE Alu 7 93 -219 340 285 55 48 chr4 139462769 139462934 -62865413 - HERV16 LTR ERVL -700 4296 4131 546 336 30 17 chr4 139463883 139464115 -62864232 - HERV16 LTR ERVL -2738 2258 2024 1874 153 159 8 chr4 139464295 139464667 -62863680 + MSTA LTR MaLR 1 428 0 1062 355 61 23 chr4 139465041 139466075 -62862272 - HERV16 LTR ERVL -3582 1414 329 1028 306 60 32 chr4 139466374 139466433 -62861914 - LTR16B LTR ERVL -21 443 387 1979 91 0 88 chr4 139466433 139466774 -62861573 + AluY SINE Alu 1 311 0 1028 306 60 32 chr4 139466774 139467145 -62861202 - LTR16B LTR ERVL -77 387 1 316 388 36 0 chr4 139468045 139468210 -62860137 + ERVL LTR ERVL 1498 1668 -4096 295 395 0 0 chr4 139468314 139468433 -62859914 + ERVL LTR ERVL 1725 1843 -3153 364 336 98 36 chr4 139468556 139468830 -62859517 + ERVL LTR ERVL 2968 3258 -2396 508 355 59 31 chr4 139469042 139469465 -62858882 + ERVL LTR ERVL 3495 3929 -1725 300 323 15 30 chr4 139470046 139470179 -62858168 + LTR16C LTR ERVL 111 241 -250 230 125 27 71 chr4 139470212 139470324 -62858023 + (TATAA)n Simple_repeat Simple_repeat 5 111 0 539 215 0 0 chr4 139470398 139470519 -62857828 + L1MA10 LINE L1 6198 6318 -16 249 369 39 23 chr4 139470589 139470719 -62857628 - MER5A DNA MER1_type -57 132 1 302 289 26 0 chr4 139472268 139472344 -62856003 + MIR3 SINE MIR 83 160 -48 32 57 0 0 chr4 139473411 139473464 -62854883 + AT_rich Low_complexity Low_complexity 1 53 0 1065 251 121 3 chr4 139473771 139474094 -62854253 + MLT1A1 LTR MaLR 5 365 0 31 0 0 0 chr4 139474676 139474707 -62853640 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr4 139475525 139475568 -62852779 + AT_rich Low_complexity Low_complexity 1 43 0 180 352 76 9 chr4 139475960 139476065 -62852282 - MIR SINE MIR -1 261 150 22 35 0 0 chr4 139476155 139476184 -62852163 + AT_rich Low_complexity Low_complexity 1 29 0 592 254 127 32 chr4 139477099 139477604 -62850743 + L1ME3A LINE L1 2393 2945 -3201 653 334 106 16 chr4 139477773 139478716 -62849631 + L1ME3A LINE L1 3222 4249 -1897 22 0 0 0 chr4 139478721 139478743 -62849604 + AT_rich Low_complexity Low_complexity 1 22 0 370 346 44 16 chr4 139478853 139479035 -62849312 + L1ME3A LINE L1 4430 4616 -1530 1145 178 0 5 chr4 139479062 139479270 -62849077 + L1MA4 LINE L1 6067 6273 -27 26 30 0 0 chr4 139479275 139479308 -62849039 + AT_rich Low_complexity Low_complexity 1 33 0 548 298 105 80 chr4 139479329 139480017 -62848330 + L1ME3A LINE L1 5461 6165 -5 1531 178 109 72 chr4 139480762 139481167 -62847180 - MSTB LTR MaLR -6 420 1 26 50 0 0 chr4 139481628 139481668 -62846679 + AT_rich Low_complexity Low_complexity 1 40 0 287 367 33 39 chr4 139482534 139482839 -62845508 - MLT1K LTR MaLR -113 475 173 39551 92 6 5 chr4 139482846 139488257 -62840090 - HERV9 LTR ERV1 -2947 5452 40 3783 87 182 12 chr4 139488270 139488858 -62839489 - LTR12 LTR ERV1 0 688 1 316 351 15 15 chr4 139489009 139489143 -62839204 - MLT1K LTR MaLR -266 322 189 1780 259 21 42 chr4 139489352 139489920 -62838427 + LTR38 LTR ERV1 1 556 0 3614 215 41 32 chr4 139489920 139490730 -62837617 + LTR38-int LTR ERV1 1 817 -969 283 202 106 64 chr4 139491345 139491439 -62836908 + PABL_B-int LTR ERV1 656 753 -6369 3926 333 61 57 chr4 139491824 139493909 -62834438 + PABL_B-int LTR ERV1 906 2980 -4142 1804 76 0 8 chr4 139493909 139494147 -62834200 + AluY SINE Alu 76 311 0 3926 333 61 57 chr4 139494147 139496598 -62831749 + PABL_B-int LTR ERV1 2980 5463 -1659 1203 298 68 57 chr4 139496784 139497704 -62830643 + PABL_B-int LTR ERV1 6326 7256 -500 2206 163 24 17 chr4 139497706 139498123 -62830224 + L1 LINE L1 4056 4475 -1671 2029 146 8 30 chr4 139498743 139499106 -62829241 + THE1A LTR MaLR 1 355 0 6388 104 5 4 chr4 139499106 139500026 -62828321 + THE1A-int LTR MaLR 1 921 -659 439 208 0 0 chr4 139500026 139500103 -62828244 - LTR9B LTR ERV1 -265 379 303 253 222 0 0 chr4 139500267 139500321 -62828026 - MER3 DNA MER1_type -151 58 5 24 0 0 0 chr4 139500446 139500470 -62827877 + AT_rich Low_complexity Low_complexity 1 24 0 3119 122 34 2 chr4 139501801 139502295 -62826052 - MER75 DNA T2_type -4 510 1 246 323 32 0 chr4 139502646 139502739 -62825608 + MER2 DNA MER2_type 3 98 -247 1259 267 71 57 chr4 139502784 139503879 -62824468 - L1MEc LINE L1 -3133 3082 1996 302 253 166 16 chr4 139503929 139504182 -62824165 - L1MEc LINE L1 -4482 1914 1624 661 270 109 43 chr4 139504373 139505050 -62823297 - L1MEc LINE L1 -4995 1401 680 400 127 0 0 chr4 139505117 139505180 -62823167 + MER41B LTR ERV1 483 545 -90 494 335 79 43 chr4 139505190 139505518 -62822829 - MLT1H1 LTR MaLR -38 517 178 675 368 35 20 chr4 139505690 139506233 -62822114 - L1MEc LINE L1 -5753 643 93 22 35 0 0 chr4 139506264 139506293 -62822054 + AT_rich Low_complexity Low_complexity 1 29 0 2589 251 30 66 chr4 139506357 139507201 -62821146 - L1MEc LINE L1 -2742 3473 2756 2394 81 3 0 chr4 139507201 139507509 -62820838 - AluY SINE Alu -2 309 1 2589 251 30 66 chr4 139507509 139508207 -62820140 - L1MEc LINE L1 -3459 2756 2034 1853 116 0 0 chr4 139508385 139508635 -62819712 - AluSx SINE Alu -62 250 1 1771 131 91 26 chr4 139508981 139509333 -62819014 + THE1C LTR MaLR 1 375 0 8924 142 60 7 chr4 139509333 139510829 -62817518 + THE1C-int LTR MaLR 5 1580 0 1683 151 81 31 chr4 139510829 139511186 -62817161 + THE1C LTR MaLR 1 375 0 384 263 63 58 chr4 139511483 139511688 -62816659 - L1M4 LINE L1 -3033 3113 2908 186 103 0 0 chr4 139511689 139511718 -62816629 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 534 250 0 17 chr4 139511720 139511836 -62816511 - FLAM_C SINE Alu -29 114 1 392 222 22 11 chr4 139511892 139511982 -62816365 - Charlie5 DNA MER1_type -2520 92 2 22 0 0 0 chr4 139512161 139512183 -62816164 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 139512322 139512352 -62815995 + AT_rich Low_complexity Low_complexity 1 30 0 2168 101 7 0 chr4 139513278 139513566 -62814781 - AluSg SINE Alu -20 290 1 227 204 20 0 chr4 139513885 139513934 -62814413 + MIR SINE MIR 184 233 -29 654 162 49 0 chr4 139514591 139514733 -62813614 - L1MB7 LINE L1 -8 6176 6028 2271 249 41 18 chr4 139514770 139515678 -62812669 - L1MB7 LINE L1 -238 5946 5010 353 309 40 7 chr4 139515672 139515821 -62812526 + L1M4c LINE L1 1664 1817 -4567 * 223 204 93 0 chr4 139516862 139516916 -62811431 - L2 LINE L2 -1 3312 3254 266 244 49 0 chr4 139517192 139517274 -62811073 - L1MB8 LINE L1 -200 5978 5893 23 78 0 0 chr4 139517605 139517656 -62810691 + AT_rich Low_complexity Low_complexity 1 51 0 205 92 105 0 chr4 139518169 139518245 -62810102 + (TA)n Simple_repeat Simple_repeat 1 84 0 347 221 32 25 chr4 139518255 139518413 -62809934 + (TTATA)n Simple_repeat Simple_repeat 5 163 0 489 224 116 43 chr4 139518417 139518455 -62809892 + MER114 LTR ERV 358 392 -256 1469 164 7 32 chr4 139518455 139518735 -62809612 - AluSx SINE Alu -16 296 24 489 224 116 43 chr4 139518735 139518928 -62809419 + MER114 LTR ERV 392 606 -42 21 0 0 0 chr4 139518953 139518974 -62809373 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 139520025 139520048 -62808299 + AT_rich Low_complexity Low_complexity 1 23 0 201 289 132 58 chr4 139520421 139520542 -62807805 - L2 LINE L2 -928 2386 2257 35 71 0 0 chr4 139520653 139520723 -62807624 + AT_rich Low_complexity Low_complexity 1 70 0 35 63 0 0 chr4 139520774 139520837 -62807510 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr4 139521500 139521521 -62806826 + AT_rich Low_complexity Low_complexity 1 21 0 581 222 126 0 chr4 139521535 139521670 -62806677 + FRAM SINE Alu 1 152 -14 2004 199 23 8 chr4 139522415 139522813 -62805534 - MER65A LTR ERV1 -2 443 40 1278 263 28 20 chr4 139522888 139523246 -62805101 - MER65A-int LTR ERV1 -17 4854 4494 337 89 18 0 chr4 139523256 139523312 -62805035 + L1MA1 LINE L1 6246 6302 0 491 229 23 0 chr4 139523342 139523473 -62804874 - MER65A-int LTR ERV1 -340 4531 4398 1147 296 89 5 chr4 139523500 139523882 -62804465 - MER65A-int LTR ERV1 -853 4018 3605 1538 247 78 55 chr4 139524028 139524987 -62803360 - LOR1-int LTR ERV1 -1113 5551 2752 386 302 14 27 chr4 139524995 139525217 -62803130 - LOR1-int LTR ERV1 -2729 3947 3729 188 61 61 0 chr4 139525357 139525390 -62802957 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 278 221 63 11 chr4 139525427 139525522 -62802825 - LOR1-int LTR ERV1 -6487 1633 1534 24 32 0 0 chr4 139525537 139525568 -62802779 + AT_rich Low_complexity Low_complexity 1 31 0 6317 218 57 63 chr4 139525622 139526047 -62802300 - LOR1-int LTR ERV1 -2378 2493 2067 1488 95 26 47 chr4 139526047 139526279 -62802068 + MER30 DNA MER1_type 4 230 0 6317 218 57 63 chr4 139526279 139528194 -62800153 - LOR1-int LTR ERV1 -2804 2067 115 1455 164 21 24 chr4 139528304 139528591 -62799756 - MER65A LTR ERV1 -159 286 1 1708 131 4 4 chr4 139528654 139528914 -62799433 - AluSx SINE Alu -8 304 45 1209 295 92 25 chr4 139529492 139530048 -62798299 + MLT1E LTR MaLR 1 593 0 369 131 0 0 chr4 139530827 139530888 -62797459 + L1PA16 LINE L1 6097 6157 -9 556 210 67 0 chr4 139530998 139531117 -62797230 + L1MCa LINE L1 21 147 -6279 * 1017 252 30 4 chr4 139531113 139531379 -62796968 + L1MC1 LINE L1 6054 6326 -7 2650 132 26 16 chr4 139531422 139531846 -62796501 + MSTA LTR MaLR 1 428 0 921 284 142 72 chr4 139532185 139532797 -62795550 - MER76 LTR ERV -32 656 2 23 78 0 0 chr4 139533010 139533061 -62795286 + AT_rich Low_complexity Low_complexity 1 51 0 214 149 45 0 chr4 139533065 139533132 -62795215 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 21 71 0 0 chr4 139533166 139533208 -62795139 + AT_rich Low_complexity Low_complexity 1 42 0 805 270 61 9 chr4 139533571 139533812 -62794535 - MLT1F1 LTR MaLR -50 517 226 613 276 7 0 chr4 139533838 139533983 -62794364 - MLT1F1 LTR MaLR -396 146 1 304 310 76 25 chr4 139533985 139534143 -62794204 + MLT1J1 LTR MaLR 137 302 -144 382 301 28 42 chr4 139534902 139535160 -62793187 + L1M1 LINE L1 5350 5604 -599 821 254 34 60 chr4 139535339 139535743 -62792604 + MER57A LTR ERV1 39 403 0 787 180 0 51 chr4 139535766 139535944 -62792403 + MER3 DNA MER1_type 41 209 0 591 292 24 24 chr4 139536103 139536312 -62792035 - MLT1J2 LTR MaLR -241 209 1 331 267 137 20 chr4 139536333 139536479 -62791868 + MIR SINE MIR 2 164 -98 870 182 7 0 chr4 139536630 139536773 -62791574 + AluJb SINE Alu 156 299 -13 206 292 0 0 chr4 139536773 139536821 -62791526 + MIR SINE MIR 182 229 -33 369 312 63 26 chr4 139537187 139537533 -62790814 + L1ME1 LINE L1 5572 5930 -240 299 326 0 0 chr4 139539936 139540025 -62788322 + MER58A DNA MER1_type 1 89 -18 570 252 0 0 chr4 139540153 139540268 -62788079 + MER58A DNA MER1_type 109 223 -1 1852 139 7 30 chr4 139540960 139541262 -62787085 + AluSx SINE Alu 1 295 -17 252 258 67 0 chr4 139541406 139541418 -62786929 - L1MA10 LINE L1 -2 6332 6321 389 275 124 8 chr4 139541418 139541640 -62786707 - L1ME2 LINE L1 -5 6161 5920 300 193 12 48 chr4 139541670 139541753 -62786594 - L1MC4 LINE L1 -1347 6695 6616 1534 257 51 12 chr4 139541815 139542305 -62786042 - MER99 DNA DNA -57 771 263 254 248 35 50 chr4 139542323 139542464 -62785883 + L1M4 LINE L1 3648 3786 -2360 36 40 0 0 chr4 139543550 139543600 -62784747 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr4 139543795 139543818 -62784529 + AT_rich Low_complexity Low_complexity 1 23 0 301 353 72 0 chr4 139543983 139544122 -62784225 + MIR SINE MIR 2 150 -112 24 53 0 0 chr4 139544193 139544231 -62784116 + AT_rich Low_complexity Low_complexity 1 38 0 792 329 114 17 chr4 139544271 139544770 -62783577 - L2 LINE L2 -251 3062 2527 304 214 60 24 chr4 139544818 139544902 -62783445 + L1MDa LINE L1 1162 1248 -5178 249 173 39 0 chr4 139544919 139544971 -62783376 - U2 snRNA snRNA -134 54 1 334 284 110 69 chr4 139545009 139545403 -62782944 + L1MDa LINE L1 1167 1552 -4874 216 149 0 0 chr4 139545637 139545684 -62782663 + (TA)n Simple_repeat Simple_repeat 1 47 0 30 27 0 0 chr4 139545909 139545946 -62782401 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr4 139546045 139546073 -62782274 + AT_rich Low_complexity Low_complexity 1 28 0 483 158 0 0 chr4 139546334 139546410 -62781937 + MER41B LTR ERV1 560 635 0 8349 194 22 14 chr4 139546410 139546587 -62781760 + L1MA3 LINE L1 3360 3534 -2612 1592 167 167 14 chr4 139546587 139546772 -62781575 - MSTA LTR MaLR 0 428 273 183 42 0 0 chr4 139546772 139546796 -62781551 + (GA)n Simple_repeat Simple_repeat 1 24 0 1592 167 167 14 chr4 139546796 139546981 -62781366 - MSTA LTR MaLR -155 273 1 8349 194 22 14 chr4 139546981 139548648 -62779699 + L1MA3 LINE L1 3534 5218 -928 4650 156 12 0 chr4 139548748 139549549 -62778798 + L1MA3 LINE L1 5487 6297 -8 337 324 99 22 chr4 139549573 139550208 -62778139 + L1M4 LINE L1 4398 5081 -1065 370 310 45 84 chr4 139550213 139550500 -62777847 - L2 LINE L2 -1421 1893 1618 23 0 0 0 chr4 139550746 139550769 -62777578 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr4 139551203 139551229 -62777118 + AT_rich Low_complexity Low_complexity 1 26 0 2445 90 0 0 chr4 139552230 139552542 -62775805 - AluSx SINE Alu 0 312 1 23 0 0 0 chr4 139553005 139553028 -62775319 + AT_rich Low_complexity Low_complexity 1 23 0 201 339 0 0 chr4 139556085 139556150 -62772197 - MIR SINE MIR -3 259 195 192 152 0 0 chr4 139556189 139556222 -62772125 + (CATATA)n Simple_repeat Simple_repeat 5 37 0 23 0 0 0 chr4 139556449 139556472 -62771875 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr4 139556563 139556594 -62771753 + AT_rich Low_complexity Low_complexity 1 31 0 236 161 18 18 chr4 139556689 139556745 -62771602 + (TA)n Simple_repeat Simple_repeat 2 57 0 24 0 0 0 chr4 139557079 139557103 -62771244 + AT_rich Low_complexity Low_complexity 1 24 0 1908 122 14 0 chr4 139557282 139557595 -62770752 + AluSc SINE Alu 1 317 0 24 91 0 0 chr4 139557721 139557787 -62770560 + AT_rich Low_complexity Low_complexity 1 66 0 230 348 17 0 chr4 139557886 139558004 -62770343 + L1M4 LINE L1 3931 4050 -2096 1414 99 5 0 chr4 139558006 139558197 -62770150 + AluSg/x SINE Alu 86 277 -33 212 57 0 29 chr4 139558200 139558235 -62770112 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 353 315 7 27 chr4 139558238 139558387 -62769960 + L1M4 LINE L1 4060 4205 -1941 332 185 41 66 chr4 139558418 139558623 -62769724 + L1M4 LINE L1 3108 3307 -2839 452 307 211 42 chr4 139558853 139559317 -62769030 - MLT1G1 LTR MaLR -61 469 4 213 297 58 29 chr4 139559328 139559466 -62768881 + L2 LINE L2 1265 1406 -1908 494 308 55 45 chr4 139559955 139560124 -62768223 - L1ME3A LINE L1 -318 5852 5686 1718 199 8 24 chr4 139560124 139560496 -62767851 - MER47A DNA MER2_type 0 366 1 494 308 55 45 chr4 139560496 139560816 -62767531 - L1ME3A LINE L1 -484 5686 5358 2599 172 8 33 chr4 139560818 139561336 -62767011 - L1PA16 LINE L1 -4 6162 5658 10196 175 28 29 chr4 139561348 139563304 -62765043 - L1PA15-16 LINE L1 -4163 2686 734 1949 118 66 0 chr4 139563360 139563648 -62764699 - AluSc SINE Alu -2 307 1 480 294 70 42 chr4 139563686 139564043 -62764304 - L1ME3A LINE L1 -870 5276 4910 260 188 0 0 chr4 139564500 139564548 -62763799 - L1M3 LINE L1 -299 5881 5834 621 337 91 19 chr4 139564991 139565418 -62762929 - HERV16 LTR ERVL -3789 1207 750 656 270 87 0 chr4 139565587 139565783 -62762564 + MER58A DNA MER1_type 12 224 0 1014 320 81 22 chr4 139565858 139566352 -62761995 + MLT1H1 LTR MaLR 1 523 -32 259 308 100 0 chr4 139566438 139566568 -62761779 - L1ME3A LINE L1 -2388 3758 3616 603 274 95 23 chr4 139566696 139567117 -62761230 - MLT1D LTR MaLR -6 499 1 315 320 45 35 chr4 139567126 139567326 -62761021 - L1ME3A LINE L1 -2689 3457 3256 276 303 13 0 chr4 139567793 139567869 -62760478 + L2 LINE L2 3237 3313 0 27 49 0 0 chr4 139568011 139568052 -62760295 + AT_rich Low_complexity Low_complexity 1 41 0 35 24 0 0 chr4 139568303 139568345 -62760002 + AT_rich Low_complexity Low_complexity 1 42 0 528 121 0 0 chr4 139568381 139568464 -62759883 + AluY SINE Alu 217 299 -12 196 158 35 18 chr4 139568810 139568867 -62759480 + GA-rich Low_complexity Low_complexity 5 62 0 4825 185 42 3 chr4 139568951 139569945 -62758402 - L1MA10 LINE L1 -3 6331 5299 796 209 12 6 chr4 139570411 139570583 -62757764 + AluJb SINE Alu 137 309 -3 30 27 0 0 chr4 139572127 139572164 -62756183 + AT_rich Low_complexity Low_complexity 1 37 0 31 0 0 0 chr4 139572222 139572253 -62756094 + AT_rich Low_complexity Low_complexity 1 31 0 222 163 23 0 chr4 139572702 139572745 -62755602 + (TAA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chr4 139573236 139573258 -62755089 + AT_rich Low_complexity Low_complexity 1 22 0 251 262 24 16 chr4 139573544 139573670 -62754677 + (TA)n Simple_repeat Simple_repeat 1 127 0 2138 87 6 35 chr4 139573811 139574122 -62754225 - AluY SINE Alu -4 307 6 2060 116 3 49 chr4 139574232 139574559 -62753788 + AluSx SINE Alu 1 312 0 744 254 59 46 chr4 139575454 139575844 -62752503 - L1M4 LINE L1 -1865 5700 5306 * 5266 178 31 22 chr4 139575843 139577287 -62751060 - L1M1 LINE L1 -507 5793 4322 1635 215 0 10 chr4 139577287 139577599 -62750748 - AluJb SINE Alu -3 309 1 5266 178 31 22 chr4 139577599 139577789 -62750558 - L1M1 LINE L1 -1978 4322 4135 1513 188 29 59 chr4 139577821 139578230 -62750117 - L1M4 LINE L1 -2289 5276 4880 1103 233 82 34 chr4 139578237 139578740 -62749607 - L1M4 LINE L1 -3891 3674 3148 2709 227 25 89 chr4 139578770 139578976 -62749371 - L1MC3 LINE L1 -341 7444 7226 2069 117 0 0 chr4 139578976 139579291 -62749056 + AluSq SINE Alu 3 317 0 2709 227 25 89 chr4 139579291 139580027 -62748320 - L1MC3 LINE L1 -559 7226 6561 2937 209 25 6 chr4 139580316 139581004 -62747343 + L1MB1 LINE L1 5467 6167 -1 28189 86 12 1 chr4 139581267 139585020 -62743327 + HERVK9 LTR ERVK 1492 5284 -632 1055 78 7 0 chr4 139586752 139586894 -62741453 + HERVH LTR ERV1 4768 4910 -2803 1399 172 4 15 chr4 139586894 139587167 -62741180 + HERVH LTR ERV1 5747 6016 -1697 * 2334 120 0 67 chr4 139587160 139587578 -62740769 + HERVH LTR ERV1 7157 7546 -167 22 0 0 0 chr4 139588021 139588043 -62740304 + AT_rich Low_complexity Low_complexity 1 22 0 338 316 53 0 chr4 139588611 139588744 -62739603 + HAL1 LINE L1 1504 1643 -864 26 0 0 0 chr4 139589328 139589354 -62738993 + AT_rich Low_complexity Low_complexity 1 26 0 440 265 50 20 chr4 139589751 139589951 -62738396 - HsTC2 DNA Tc2 -16 1882 1677 4128 194 37 16 chr4 139590178 139591077 -62737270 - L1MC1 LINE L1 -145 6188 5271 632 330 35 31 chr4 139591175 139591436 -62736911 + L2 LINE L2 995 1256 -2058 26 30 0 0 chr4 139591840 139591873 -62736474 + AT_rich Low_complexity Low_complexity 1 33 0 31 58 0 0 chr4 139593507 139593559 -62734788 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr4 139593583 139593604 -62734743 + AT_rich Low_complexity Low_complexity 1 21 0 1047 158 40 0 chr4 139593609 139593786 -62734561 + L1PA16 LINE L1 5776 5959 -207 1068 172 0 108 chr4 139593953 139593997 -62734350 + L1PA16 LINE L1 5931 5978 -188 2276 101 0 22 chr4 139593997 139594314 -62734033 + AluSg SINE Alu 1 310 0 1068 172 0 108 chr4 139594314 139594519 -62733828 + L1PA16 LINE L1 5978 6153 -13 218 230 14 27 chr4 139594654 139594728 -62733619 + CT-rich Low_complexity Low_complexity 3 75 0 651 300 58 21 chr4 139595230 139595473 -62732874 + MLT1I LTR MaLR 85 336 -73 23 0 0 0 chr4 139595486 139595509 -62732838 + AT_rich Low_complexity Low_complexity 1 23 0 278 93 0 148 chr4 139595890 139595944 -62732403 - MLT2D LTR ERVL -3 517 366 201 211 0 0 chr4 139595951 139596003 -62732344 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 614 251 73 106 chr4 139596003 139596333 -62732014 - MLT2D LTR ERVL -53 411 93 2213 93 3 0 chr4 139596370 139596660 -62731687 + AluSg SINE Alu 1 291 -19 3497 113 86 22 chr4 139596674 139597733 -62730614 - MER11A LTR ERVK 0 1236 1 181 214 0 71 chr4 139598344 139598400 -62729947 - MIR3 SINE MIR -34 174 123 1799 147 35 3 chr4 139598678 139598963 -62729384 - AluSx SINE Alu -18 294 1 1213 141 0 0 chr4 139599968 139600145 -62728202 - AluSg/x SINE Alu -16 296 120 717 219 34 0 chr4 139600229 139600375 -62727972 + FRAM SINE Alu 2 152 -24 26 0 0 0 chr4 139600375 139600401 -62727946 + AT_rich Low_complexity Low_complexity 1 26 0 212 333 140 0 chr4 139600401 139600494 -62727853 + L2 LINE L2 3208 3313 0 23 33 0 0 chr4 139601957 139601987 -62726360 + AT_rich Low_complexity Low_complexity 1 30 0 3695 153 21 6 chr4 139602885 139603498 -62724849 + Tigger1 DNA MER2_type 1 622 -1796 1733 165 80 43 chr4 139603498 139603849 -62724498 + THE1B LTR MaLR 1 364 0 10094 148 4 38 chr4 139603849 139605485 -62722862 + THE1B-int LTR MaLR 1 1580 0 1718 188 83 0 chr4 139605485 139605821 -62722526 + THE1B LTR MaLR 1 364 0 3206 152 11 4 chr4 139605822 139606363 -62721984 + Tigger1 DNA MER2_type 620 1164 -1254 1257 162 25 21 chr4 139606363 139606598 -62721749 + AluSg/x SINE Alu 74 309 -1 2318 145 16 3 chr4 139606602 139606982 -62721365 + Tigger1 DNA MER2_type 1149 1533 -885 182 311 146 56 chr4 139607103 139607370 -62720977 + L2 LINE L2 2035 2325 -989 29 78 0 0 chr4 139607370 139607434 -62720913 + AT_rich Low_complexity Low_complexity 1 64 0 34 84 0 0 chr4 139608286 139608369 -62719978 + AT_rich Low_complexity Low_complexity 1 83 0 224 159 29 29 chr4 139608382 139608451 -62719896 + (TA)n Simple_repeat Simple_repeat 1 69 0 22 0 0 0 chr4 139608699 139608721 -62719626 + AT_rich Low_complexity Low_complexity 1 22 0 419 354 57 0 chr4 139611013 139611259 -62717088 - L1MEc LINE L1 -6026 370 111 1236 140 105 129 chr4 139611583 139611925 -62716422 - MER44D DNA MER2_type -4 605 2 1959 221 118 46 chr4 139612105 139612879 -62715468 + LTR28 LTR ERV1 1 1018 -2 1165 154 5 0 chr4 139612881 139613082 -62715265 + Tigger1 DNA MER2_type 47 248 -2170 25 65 0 0 chr4 139613695 139613741 -62714606 + AT_rich Low_complexity Low_complexity 1 46 0 204 143 50 76 chr4 139613788 139613907 -62714440 + (CATATA)n Simple_repeat Simple_repeat 2 117 0 21 0 0 0 chr4 139614793 139614814 -62713533 + AT_rich Low_complexity Low_complexity 1 21 0 1060 134 6 0 chr4 139614901 139615065 -62713282 - AluSg/x SINE Alu -17 295 131 27 0 0 0 chr4 139615227 139615254 -62713093 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr4 139615364 139615394 -62712953 + AT_rich Low_complexity Low_complexity 1 30 0 180 152 0 0 chr4 139615555 139615588 -62712759 + CT-rich Low_complexity Low_complexity 2 34 0 1289 152 32 5 chr4 139615995 139616212 -62712135 - L1PA15 LINE L1 -21 6144 5922 * 1726 142 17 23 chr4 139616208 139616510 -62711837 - L1PA15 LINE L1 -519 5646 5347 6135 77 7 1 chr4 139616690 139617546 -62710801 + L1P LINE L1 2838 3698 -2448 37 23 0 0 chr4 139617701 139617745 -62710602 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr4 139618621 139618643 -62709704 + AT_rich Low_complexity Low_complexity 1 22 0 261 146 0 0 chr4 139619335 139619383 -62708964 + (TC)n Simple_repeat Simple_repeat 1 48 0 25 0 0 0 chr4 139619742 139619767 -62708580 + AT_rich Low_complexity Low_complexity 1 25 0 23 68 0 0 chr4 139619806 139619850 -62708497 + AT_rich Low_complexity Low_complexity 1 44 0 1113 253 77 33 chr4 139620887 139621176 -62707171 + MLT1C LTR MaLR 20 336 -131 2004 158 39 8 chr4 139621176 139621536 -62706811 - THE1C LTR MaLR -4 371 1 1113 253 77 33 chr4 139621536 139621673 -62706674 + MLT1C LTR MaLR 336 465 -2 885 198 143 50 chr4 139622559 139622817 -62705530 + AluJo SINE Alu 5 286 -16 227 305 19 29 chr4 139623570 139623675 -62704672 - L1M2 LINE L1 -383 5917 5814 715 182 59 21 chr4 139623693 139623880 -62704467 - L1MA8 LINE L1 -11 6280 6087 726 312 99 13 chr4 139623956 139624720 -62703627 - L1ME LINE L1 -460 5771 4950 1176 241 57 24 chr4 139624881 139625225 -62703122 + MLT1A1 LTR MaLR 1 390 0 1123 303 103 76 chr4 139625230 139625871 -62702476 - L1ME LINE L1 -1437 4778 4156 2145 104 10 3 chr4 139625871 139626179 -62702168 + AluY SINE Alu 1 310 -1 1123 303 103 76 chr4 139626179 139626202 -62702145 - L1ME LINE L1 -2059 4156 4135 1939 211 36 2 chr4 139626202 139626614 -62701733 + MSTB LTR MaLR 1 426 0 1123 303 103 76 chr4 139626614 139627180 -62701167 - L1ME LINE L1 -2080 4135 3586 2151 87 4 0 chr4 139627180 139627456 -62700891 - AluSg SINE Alu -15 295 19 1123 303 103 76 chr4 139627456 139627742 -62700605 - L1ME LINE L1 -2629 3586 3309 896 191 12 0 chr4 139627742 139627904 -62700443 - FAM SINE Alu -8 167 4 1123 303 103 76 chr4 139627904 139628207 -62700140 - L1ME LINE L1 -2906 3309 2907 300 259 138 0 chr4 139628222 139628338 -62700009 - L1ME LINE L1 -4138 2258 2127 328 271 54 48 chr4 139628709 139628875 -62699472 - L1M4 LINE L1 -3847 2535 2369 315 325 62 14 chr4 139629635 139629924 -62698423 - L1M4 LINE L1 -4775 1609 1307 5192 172 25 11 chr4 139630226 139631272 -62697075 - L1MA4 LINE L1 -5 6295 5234 51 31 0 0 chr4 139631868 139631933 -62696414 + AT_rich Low_complexity Low_complexity 1 65 0 243 0 0 0 chr4 139632021 139632048 -62696299 + (CA)n Simple_repeat Simple_repeat 2 28 0 24 53 0 0 chr4 139632624 139632662 -62695685 + AT_rich Low_complexity Low_complexity 1 38 0 198 328 82 33 chr4 139633083 139633205 -62695142 - MIR3 SINE MIR -30 178 51 209 368 44 35 chr4 139633794 139633908 -62694439 - MER91A DNA MER1_type -52 144 30 903 198 88 153 chr4 139634956 139635355 -62692992 - MLT1A2 LTR MaLR -1 373 1 337 206 0 0 chr4 139636137 139636200 -62692147 + MER61A LTR ERV1 1 63 -280 1120 148 30 25 chr4 139636228 139636430 -62691917 + MER61A LTR ERV1 141 343 0 2204 184 56 24 chr4 139636430 139636881 -62691466 + MER61A-int LTR ERV1 1 473 -4744 186 43 0 0 chr4 139636881 139636904 -62691443 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2204 184 56 24 chr4 139636904 139636984 -62691363 + MER61A-int LTR ERV1 473 549 -4668 270 210 16 16 chr4 139636988 139637050 -62691297 + MER61-int LTR ERV1 2556 2617 -4801 266 191 0 0 chr4 139637052 139637099 -62691248 + MER61-int LTR ERV1 731 777 -4440 9688 131 33 22 chr4 139637138 139639290 -62689057 + MER61-int LTR ERV1 1413 4537 -478 989 77 8 0 chr4 139639290 139639420 -62688927 - AluSg/x SINE Alu -6 304 174 212 271 86 14 chr4 139639436 139639506 -62688841 + MIR SINE MIR 80 154 -108 224 303 15 0 chr4 139641174 139641240 -62687107 - MER5A DNA MER1_type -22 167 101 21 0 0 0 chr4 139643529 139643550 -62684797 + AT_rich Low_complexity Low_complexity 1 21 0 252 86 0 0 chr4 139644741 139644776 -62683571 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 2008 154 0 3 chr4 139645093 139645398 -62682949 + AluSx SINE Alu 1 304 -8 1985 116 40 111 chr4 139646005 139646401 -62681946 - MER51B LTR ERV1 -9 368 1 8114 135 48 21 chr4 139646413 139648326 -62680021 - MER51B-int LTR ERV1 -11 7805 5620 475 120 109 11 chr4 139648316 139648408 -62679939 - MER51B-int LTR ERV1 -2188 5349 5249 * 1933 117 13 4 chr4 139648407 139648788 -62679559 - MER51-int LTR ERV1 -2572 2645 2217 * 2124 167 161 2 chr4 139648774 139649247 -62679100 - MER51-int LTR ERV1 -2579 3367 2820 * 2460 124 61 0 chr4 139649232 139649643 -62678704 - MER51-int LTR ERV1 -4501 3315 2880 868 132 399 0 chr4 139649643 139649856 -62678491 + LTR7 LTR ERV1 1 298 -152 2526 111 0 0 chr4 139649857 139650209 -62678138 + HERVH LTR ERV1 4488 4839 -2874 1687 106 0 22 chr4 139650196 139650470 -62677877 + HERVH LTR ERV1 2561 2828 -4885 * 2534 122 0 3 chr4 139650468 139650852 -62677495 + HERVH LTR ERV1 3354 3736 -3977 1138 139 6 6 chr4 139650845 139651047 -62677300 + HERVH LTR ERV1 3962 4166 -2376 * 2768 119 14 11 chr4 139651040 139651476 -62676871 + HERVH LTR ERV1 7277 7713 0 2530 95 125 5 chr4 139651476 139651876 -62676471 + LTR7 LTR ERV1 1 448 -2 11283 124 127 103 chr4 139651887 139654607 -62673740 - MER51B-int LTR ERV1 -5033 2783 1 2148 134 79 0 chr4 139654614 139654957 -62673390 - MER51B LTR ERV1 -7 370 1 243 294 130 50 chr4 139655980 139656218 -62672129 + MLT1J1 LTR MaLR 66 322 -124 5174 137 16 40 chr4 139657258 139658450 -62669897 - L1PA14 LINE L1 -33 6128 4969 405 321 67 61 chr4 139658443 139658773 -62669574 + MLT1J LTR MaLR 162 493 -18 * 1154 343 103 36 chr4 139658816 139660246 -62668101 + L2 LINE L2 1289 2814 -500 254 340 43 11 chr4 139660625 139660719 -62667628 + L2 LINE L2 3217 3313 0 22 56 0 0 chr4 139660948 139660984 -62667363 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr4 139661534 139661565 -62666782 + AT_rich Low_complexity Low_complexity 1 31 0 1813 154 7 10 chr4 139662638 139662936 -62665411 + AluSx SINE Alu 1 297 -15 24 0 0 0 chr4 139664509 139664533 -62663814 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 139664620 139664642 -62663705 + AT_rich Low_complexity Low_complexity 1 22 0 1303 255 59 80 chr4 139664710 139665135 -62663212 + L1ME1 LINE L1 5272 5704 -630 2058 118 0 3 chr4 139665135 139665424 -62662923 - AluSg SINE Alu -22 288 1 1303 255 59 80 chr4 139665424 139665911 -62662436 + L1ME1 LINE L1 5704 6334 0 369 321 0 0 chr4 139666133 139666245 -62662102 + (TA)n Simple_repeat Simple_repeat 1 112 0 1660 159 14 4 chr4 139666245 139666522 -62661825 - AluJb SINE Alu -26 286 7 244 189 61 122 chr4 139668325 139668489 -62659858 - L1M4 LINE L1 -3141 3005 2852 1685 270 56 17 chr4 139668677 139669807 -62658540 + L1ME1 LINE L1 4902 6072 -94 27 73 0 0 chr4 139669847 139669902 -62658445 + AT_rich Low_complexity Low_complexity 1 55 0 1011 264 101 49 chr4 139669944 139670755 -62657592 + L1MDa LINE L1 2455 3343 -3197 2217 71 0 7 chr4 139670755 139671069 -62657278 + AluY SINE Alu 1 312 0 1011 264 101 49 chr4 139671069 139671249 -62657098 + L1MDa LINE L1 3343 3512 -3028 1232 164 7 77 chr4 139671250 139671326 -62657021 + L1MA9 LINE L1 6041 6121 -191 1854 162 94 18 chr4 139671326 139671721 -62656626 + MSTA LTR MaLR 3 427 -1 1232 164 7 77 chr4 139671721 139671931 -62656416 + L1MA9 LINE L1 6121 6307 -5 459 296 63 11 chr4 139672004 139672274 -62656073 + L1MDa LINE L1 3578 3861 -2679 548 313 146 7 chr4 139672366 139672798 -62655549 + L1MDa LINE L1 4015 4506 -2034 22 0 0 0 chr4 139672818 139672840 -62655507 + AT_rich Low_complexity Low_complexity 1 22 0 188 244 89 0 chr4 139673309 139673354 -62654993 + L2 LINE L2 3004 3052 -220 723 122 0 16 chr4 139673885 139674008 -62654339 + AluSp/q SINE Alu 193 313 0 2612 207 28 33 chr4 139674069 139674204 -62654143 - L1MA9 LINE L1 -22 6290 6156 378 0 0 0 chr4 139674204 139674246 -62654101 + (TG)n Simple_repeat Simple_repeat 1 42 0 2612 207 28 33 chr4 139674246 139674782 -62653565 - L1MA9 LINE L1 -156 6156 5622 7512 117 13 1 chr4 139675520 139676600 -62651747 - THE1B-int LTR MaLR -484 1096 4 1286 191 7 40 chr4 139676610 139676883 -62651464 - THE1B LTR MaLR -5 359 96 13669 33 9 1 chr4 139676984 139679193 -62649154 - L1PA3 LINE L1 -261 5894 3671 1774 163 0 7 chr4 139679602 139679885 -62648462 - AluSx SINE Alu -9 303 23 27 49 0 0 chr4 139680053 139680094 -62648253 + AT_rich Low_complexity Low_complexity 1 41 0 2050 106 24 3 chr4 139680116 139680408 -62647939 - AluSq SINE Alu -15 298 1 2483 57 0 0 chr4 139680595 139680895 -62647452 - AluY SINE Alu -11 300 1 3036 174 33 43 chr4 139681391 139682347 -62646000 + L1MA6 LINE L1 4852 5796 -504 297 0 0 0 chr4 139682347 139682380 -62645967 + (CA)n Simple_repeat Simple_repeat 2 34 0 3036 174 33 43 chr4 139682380 139682469 -62645878 + L1MA6 LINE L1 5796 5884 -416 23 0 0 0 chr4 139682701 139682724 -62645623 + AT_rich Low_complexity Low_complexity 1 23 0 502 279 162 14 chr4 139682724 139683229 -62645118 - L1M4 LINE L1 -3181 2965 2386 1777 154 56 34 chr4 139683279 139683635 -62644712 - THE1B LTR MaLR 0 364 1 2473 85 3 53 chr4 139683639 139683962 -62644385 - THE1B-int LTR MaLR -4 1576 1273 1946 137 3 0 chr4 139683962 139684261 -62644086 + AluSq SINE Alu 7 306 -7 2473 85 3 53 chr4 139684261 139684312 -62644035 - THE1B-int LTR MaLR -307 1273 1221 2738 156 8 30 chr4 139684414 139684887 -62643460 - MER52A LTR ERV1 -321 1434 972 2117 152 36 14 chr4 139684897 139685253 -62643094 + THE1B LTR MaLR 1 364 0 9852 103 21 76 chr4 139685253 139686109 -62642238 + THE1B-int LTR MaLR 1 842 -738 682 177 0 0 chr4 139686109 139686222 -62642125 + AluSq/x SINE Alu 3 115 -197 9852 103 21 76 chr4 139686222 139686916 -62641431 + THE1B-int LTR MaLR 842 1572 -8 1890 161 40 15 chr4 139687016 139687340 -62641007 + THE1B LTR MaLR 33 364 0 2210 243 162 19 chr4 139687341 139688052 -62640295 - MER52A LTR ERV1 -860 895 1 524 195 0 62 chr4 139688470 139688598 -62639749 + FLAM_A SINE Alu 1 120 -13 397 156 21 0 chr4 139688598 139688694 -62639653 + (TA)n Simple_repeat Simple_repeat 1 98 0 180 340 93 0 chr4 139689089 139689186 -62639161 + MIR SINE MIR 155 260 -2 4730 196 12 24 chr4 139689475 139690223 -62638124 + L1 LINE L1 3455 4189 -1957 2422 64 3 0 chr4 139690223 139690520 -62637827 - AluY SINE Alu -13 298 1 4730 196 12 24 chr4 139690520 139690821 -62637526 + L1 LINE L1 4189 4492 -1654 784 252 29 9 chr4 139691013 139691223 -62637124 - MLT1D LTR MaLR -2 503 290 1360 160 28 35 chr4 139691548 139691836 -62636511 + MLT1A2-int LTR MaLR 1396 1681 -54 1757 182 64 31 chr4 139691836 139692159 -62636188 + MLT1A2 LTR MaLR 1 339 -35 1557 196 153 3 chr4 139692159 139692531 -62635816 - MSTA LTR MaLR 0 428 1 1757 182 64 31 chr4 139692531 139692564 -62635783 + MLT1A2 LTR MaLR 339 369 -5 23 33 0 0 chr4 139693054 139693084 -62635263 + AT_rich Low_complexity Low_complexity 1 30 0 1745 169 0 7 chr4 139693085 139693363 -62634984 - AluJo SINE Alu -24 288 13 312 341 0 0 chr4 139693470 139693561 -62634786 - L1MEc LINE L1 -4599 1797 1707 826 287 11 43 chr4 139695852 139696090 -62632257 + MLT1D LTR MaLR 232 461 -44 1752 179 87 45 chr4 139696090 139696470 -62631877 + MSTD LTR MaLR 1 396 0 826 287 11 43 chr4 139696470 139696510 -62631837 + MLT1D LTR MaLR 461 501 -4 26 39 0 20 chr4 139696618 139696639 -62631708 + AT_rich Low_complexity Low_complexity 1 21 -29 1651 201 20 0 chr4 139696639 139696938 -62631409 + AluJo SINE Alu 1 305 -7 26 39 0 20 chr4 139696938 139696967 -62631380 + AT_rich Low_complexity Low_complexity 21 50 0 1160 293 56 56 chr4 139696982 139697083 -62631264 + L1M4 LINE L1 1056 1155 -5670 1628 193 11 0 chr4 139697083 139697363 -62630984 + AluSx SINE Alu 1 283 -29 1160 293 56 56 chr4 139697363 139698456 -62629891 + L1M4 LINE L1 1155 2389 -4436 40 21 0 0 chr4 139698868 139698915 -62629432 + AT_rich Low_complexity Low_complexity 1 47 0 335 103 0 17 chr4 139699377 139699435 -62628912 + (CA)n Simple_repeat Simple_repeat 2 58 0 183 204 0 0 chr4 139699465 139699509 -62628838 + (CA)n Simple_repeat Simple_repeat 1 44 0 907 300 7 39 chr4 139699534 139699841 -62628506 + L1M3b LINE L1 1216 1512 -5984 1424 294 23 8 chr4 139699945 139700333 -62628014 + L1M3b LINE L1 1557 1950 -5546 992 333 32 42 chr4 139700426 139701283 -62627064 + L1M3b LINE L1 1781 2412 -5084 978 220 40 28 chr4 139701339 139701666 -62626681 + L1M3b LINE L1 3296 3626 -3939 749 23 0 0 chr4 139701666 139701754 -62626593 + L1PA5 LINE L1 6058 6145 -9 25 0 0 0 chr4 139701761 139701786 -62626561 + AT_rich Low_complexity Low_complexity 1 25 0 181 0 0 65 chr4 139701856 139701887 -62626460 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 10764 226 44 24 chr4 139701891 139704256 -62624091 + L1M3b LINE L1 3628 5944 -1621 2898 144 27 8 chr4 139704256 139704741 -62623606 - LOR1a LTR ERV1 0 497 4 198 0 0 0 chr4 139704748 139704770 -62623577 + (CA)n Simple_repeat Simple_repeat 1 22 0 200 31 62 0 chr4 139704777 139704809 -62623538 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 10764 226 44 24 chr4 139704809 139705282 -62623065 + L1M3b LINE L1 5954 6551 -1014 2490 58 0 3 chr4 139705282 139705592 -62622755 + AluY SINE Alu 1 309 -2 10764 226 44 24 chr4 139705592 139705835 -62622512 + L1M3b LINE L1 6551 6788 -777 24 0 0 0 chr4 139705860 139705884 -62622463 + AT_rich Low_complexity Low_complexity 1 24 0 1943 161 22 34 chr4 139706039 139706119 -62622228 + L1MA6 LINE L1 5887 5966 -334 2348 74 3 0 chr4 139706119 139706415 -62621932 + AluY SINE Alu 1 297 -14 1943 161 22 34 chr4 139706415 139706749 -62621598 + L1MA6 LINE L1 5966 6296 -4 25 83 0 0 chr4 139707128 139707188 -62621159 + AT_rich Low_complexity Low_complexity 1 60 0 205 152 0 0 chr4 139707315 139707348 -62620999 + (TG)n Simple_repeat Simple_repeat 2 34 0 292 254 30 0 chr4 139708974 139709041 -62619306 + MIR3 SINE MIR 108 176 -32 185 320 0 0 chr4 139709155 139709205 -62619142 + MIR SINE MIR 104 153 -109 2271 103 0 0 chr4 139709664 139709966 -62618381 - AluSq SINE Alu -11 302 1 23 54 0 0 chr4 139711340 139711377 -62616970 + AT_rich Low_complexity Low_complexity 1 37 0 1885 146 31 0 chr4 139712129 139712417 -62615930 + AluJb SINE Alu 1 297 -15 24 32 0 0 chr4 139713074 139713105 -62615242 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 139713792 139713813 -62614534 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr4 139714138 139714178 -62614169 + AT_rich Low_complexity Low_complexity 1 40 0 28 79 0 0 chr4 139714221 139714284 -62614063 + AT_rich Low_complexity Low_complexity 1 63 0 208 143 60 0 chr4 139715182 139715266 -62613081 + (TA)n Simple_repeat Simple_repeat 2 90 0 377 288 27 0 chr4 139715576 139715687 -62612660 - MIR SINE MIR -51 211 98 694 205 0 0 chr4 139717584 139717701 -62610646 + AluJb SINE Alu 2 118 -194 357 109 0 0 chr4 139717708 139717763 -62610584 + (CA)n Simple_repeat Simple_repeat 2 56 0 23 54 0 0 chr4 139717763 139717800 -62610547 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr4 139718142 139718171 -62610176 + AT_rich Low_complexity Low_complexity 1 29 0 490 295 67 0 chr4 139718418 139718567 -62609780 + MIR SINE MIR 11 169 -93 2716 214 68 5 chr4 139718697 139719432 -62608915 - L1 LINE L1 -1260 4886 4106 952 154 26 3 chr4 139719414 139719717 -62608630 + L1MA7 LINE L1 5864 6239 -52 * 918 254 93 82 chr4 139719930 139720639 -62607708 - L1ME3A LINE L1 -179 5983 5267 1218 266 60 108 chr4 139721374 139722020 -62606327 + MLT1E2 LTR MaLR 10 626 0 207 0 0 0 chr4 139722587 139722610 -62605737 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1995 112 0 0 chr4 139722631 139722891 -62605456 - AluSq SINE Alu -51 262 3 181 30 91 0 chr4 139723209 139723242 -62605105 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 4815 167 58 5 chr4 139723247 139724384 -62603963 - L1PA16 LINE L1 -9 6157 4966 1909 183 14 40 chr4 139724386 139724812 -62603535 + L1PA16 LINE L1 4541 4955 -1191 279 392 0 14 chr4 139725306 139725454 -62602893 - MLT1I LTR MaLR -208 201 56 1455 218 3 3 chr4 139725576 139725861 -62602486 + AluJo SINE Alu 2 286 -26 1509 299 99 31 chr4 139726164 139727301 -62601046 + HAL1 LINE L1 147 1361 -1146 300 88 15 29 chr4 139727314 139727382 -62600965 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 2203 106 0 3 chr4 139727612 139727915 -62600432 + AluY SINE Alu 1 302 -9 4325 160 58 22 chr4 139727918 139728820 -62599527 + L1MA7 LINE L1 5358 6291 0 23 68 0 0 chr4 139729729 139729773 -62598574 + AT_rich Low_complexity Low_complexity 1 44 0 2202 99 3 3 chr4 139730129 139730421 -62597926 - AluSx SINE Alu -20 292 1 387 0 0 0 chr4 139730501 139730544 -62597803 + (TG)n Simple_repeat Simple_repeat 1 43 0 1389 212 36 4 chr4 139731241 139731515 -62596832 - AluJo SINE Alu -29 283 1 3737 147 10 40 chr4 139731531 139731874 -62596473 - L1MA8 LINE L1 -346 5945 5593 2038 109 32 3 chr4 139731874 139732158 -62596189 - AluSg SINE Alu -18 292 1 3737 147 10 40 chr4 139732158 139732561 -62595786 - L1MA8 LINE L1 -698 5593 5222 268 285 53 66 chr4 139732565 139732716 -62595631 + MIR SINE MIR 94 242 -20 599 216 61 40 chr4 139732783 139732931 -62595416 + MER20 DNA MER1_type 2 152 -67 382 266 55 28 chr4 139733517 139733626 -62594721 + MER20 DNA MER1_type 102 213 -6 730 310 27 16 chr4 139735055 139735313 -62593034 + LTR16A LTR ERVL 177 437 -13 1812 125 50 0 chr4 139735546 139735662 -62592685 + AluSq SINE Alu 1 110 -203 183 42 0 0 chr4 139735662 139735686 -62592661 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1812 125 50 0 chr4 139735686 139735849 -62592498 + AluSq SINE Alu 110 294 -19 198 0 0 0 chr4 139735853 139735875 -62592472 + (TAA)n Simple_repeat Simple_repeat 3 24 0 42 86 0 0 chr4 139736627 139736732 -62591615 + AT_rich Low_complexity Low_complexity 1 105 0 676 270 55 21 chr4 139736780 139737069 -62591278 - L1MC4 LINE L1 -718 7324 7026 821 257 60 41 chr4 139737130 139737791 -62590556 + L1MC4 LINE L1 5993 6618 -1190 237 302 48 63 chr4 139737868 139737994 -62590353 + L1MC4 LINE L1 6721 6844 -1198 352 329 76 21 chr4 139738230 139738467 -62589880 + L2 LINE L2 2525 2774 -540 342 397 75 0 chr4 139738485 139738699 -62589648 + MIR SINE MIR 2 231 -31 2079 186 28 12 chr4 139738717 139739323 -62589024 + MER50 LTR ERV1 1 711 -23 8999 53 102 9 chr4 139739860 139741113 -62587234 - L1P LINE L1 -4567 1579 210 7032 24 0 0 chr4 139741113 139741936 -62586411 + L1PA3 LINE L1 5332 6154 -1 24 32 0 0 chr4 139742702 139742733 -62585614 + AT_rich Low_complexity Low_complexity 1 31 0 200 278 93 19 chr4 139744524 139744632 -62583715 + MIR SINE MIR 147 262 0 205 149 21 21 chr4 139744726 139744773 -62583574 + (TA)n Simple_repeat Simple_repeat 2 48 0 234 91 0 0 chr4 139744780 139744813 -62583534 + (TG)n Simple_repeat Simple_repeat 2 34 0 345 406 15 0 chr4 139745531 139745664 -62582683 + L2 LINE L2 3138 3272 0 21 0 0 0 chr4 139746174 139746195 -62582152 + AT_rich Low_complexity Low_complexity 1 21 0 32 75 0 0 chr4 139746237 139746304 -62582043 + AT_rich Low_complexity Low_complexity 1 67 0 533 364 55 4 chr4 139750551 139750787 -62577560 - MIR SINE MIR 0 262 15 415 224 68 50 chr4 139751711 139751872 -62576475 - LTR50 LTR ERVL -628 167 4 27 29 0 0 chr4 139752515 139752549 -62575798 + AT_rich Low_complexity Low_complexity 1 34 0 311 311 76 15 chr4 139752718 139752850 -62575497 - MIR SINE MIR -16 246 107 31 0 0 0 chr4 139754975 139755006 -62573341 + AT_rich Low_complexity Low_complexity 1 31 0 240 167 0 0 chr4 139755154 139755202 -62573145 + GA-rich Low_complexity Low_complexity 2 49 0 316 353 21 32 chr4 139755450 139755637 -62572710 + MIR SINE MIR 52 236 -26 314 93 37 0 chr4 139755940 139755994 -62572353 + C-rich Low_complexity Low_complexity 2 57 0 1340 218 19 29 chr4 139755994 139756302 -62572045 - AluJo SINE Alu -7 305 1 456 19 0 0 chr4 139756577 139756630 -62571717 + (TG)n Simple_repeat Simple_repeat 2 54 0 358 296 40 8 chr4 139756983 139757108 -62571239 - L2 LINE L2 -560 2754 2626 2184 109 3 3 chr4 139757622 139757925 -62570422 - AluSc SINE Alu -6 303 1 268 192 0 19 chr4 139757950 139758002 -62570345 - L2 LINE L2 0 3313 3263 743 222 36 0 chr4 139758016 139758183 -62570164 + MER2 DNA MER2_type 1 173 -172 34 42 0 0 chr4 139758253 139758301 -62570046 + AT_rich Low_complexity Low_complexity 1 48 0 27 29 0 0 chr4 139758362 139758396 -62569951 + AT_rich Low_complexity Low_complexity 1 34 0 915 72 29 7 chr4 139758508 139758646 -62569701 - L1P4 LINE L1 -713 5461 5321 2639 118 2 5 chr4 139759257 139759665 -62568682 + L1PB1 LINE L1 4911 5317 -829 4481 25 3 0 chr4 139760096 139760895 -62567452 - L1P2 LINE L1 -495 5660 4858 6318 38 0 0 chr4 139760899 139761666 -62566681 + L1P2 LINE L1 4103 4869 -1277 1465 170 11 7 chr4 139761674 139761945 -62566402 + L1M2 LINE L1 5382 5653 -638 2838 199 71 18 chr4 139761973 139762692 -62565655 + L1MA7 LINE L1 5535 6291 0 466 68 27 40 chr4 139762706 139762780 -62565567 - L1PB1 LINE L1 -477 5674 5602 3077 110 0 58 chr4 139762782 139763300 -62565047 + L1PB1 LINE L1 5661 6148 -3 228 233 0 0 chr4 139763341 139763414 -62564933 + (TA)n Simple_repeat Simple_repeat 2 74 0 26 93 0 0 chr4 139763746 139763821 -62564526 + AT_rich Low_complexity Low_complexity 1 75 0 236 305 93 0 chr4 139763854 139763931 -62564416 - L1MC/D LINE L1 -2135 5673 5597 921 74 22 10 chr4 139763931 139764088 -62564259 - L1PA8A LINE L1 -280 5875 5545 1715 116 0 15 chr4 139764088 139764347 -62564000 + L1PA8A LINE L1 5877 6131 0 28 0 0 0 chr4 139764472 139764500 -62563847 + AT_rich Low_complexity Low_complexity 1 28 0 445 195 121 27 chr4 139764534 139764637 -62563710 - L1MA7 LINE L1 -1 6290 6167 1624 200 0 0 chr4 139764637 139764927 -62563420 - AluSx SINE Alu -22 290 1 445 195 121 27 chr4 139764927 139764972 -62563375 - L1MA7 LINE L1 -124 6167 6128 264 253 13 0 chr4 139764964 139765043 -62563304 - L1MA6 LINE L1 -244 6056 5977 * 250 196 0 0 chr4 139765044 139765090 -62563257 + L1MA6 LINE L1 5913 5958 -342 184 341 79 16 chr4 139765121 139765247 -62563100 + MIR SINE MIR 67 200 -62 190 240 21 135 chr4 139767267 139767363 -62560984 + L2 LINE L2 3215 3299 -14 1632 180 71 6 chr4 139767701 139768024 -62560323 + MER2 DNA MER2_type 1 344 0 269 346 45 32 chr4 139768694 139768850 -62559497 + MIR SINE MIR 9 166 -96 2150 109 0 0 chr4 139768876 139769159 -62559188 - AluSq SINE Alu -20 293 11 183 220 0 0 chr4 139769239 139769289 -62559058 + (ATG)n Simple_repeat Simple_repeat 2 51 0 21 0 0 0 chr4 139769317 139769338 -62559009 + AT_rich Low_complexity Low_complexity 1 21 0 1425 175 13 26 chr4 139769362 139769670 -62558677 - L1MC1 LINE L1 -12 6321 6018 35 0 0 0 chr4 139769672 139769707 -62558640 + AT_rich Low_complexity Low_complexity 1 35 0 304 257 50 0 chr4 139769713 139769814 -62558533 - L1MA9 LINE L1 -39 6273 6168 25 31 0 0 chr4 139769919 139769951 -62558396 + AT_rich Low_complexity Low_complexity 1 32 0 1724 193 25 6 chr4 139770570 139770897 -62557450 - MER2 DNA MER2_type 0 345 13 425 287 2 20 chr4 139771084 139771255 -62557092 + L1MEc LINE L1 2314 2457 -3758 2512 167 114 28 chr4 139771287 139771797 -62556550 - MER21A LTR ERV1 0 931 378 1194 198 13 17 chr4 139771806 139772044 -62556303 - MER21A LTR ERV1 -669 262 26 3849 265 89 38 chr4 139772065 139772653 -62555694 + L1MEc LINE L1 3082 3638 -2577 288 0 0 0 chr4 139772653 139772685 -62555662 + (CA)n Simple_repeat Simple_repeat 2 33 0 3849 265 89 38 chr4 139772685 139774104 -62554243 + L1MEc LINE L1 3638 5192 -1023 388 314 95 29 chr4 139774535 139774914 -62553433 + L1MEc LINE L1 5258 5658 -756 3584 238 110 6 chr4 139774919 139775937 -62552410 - L1MC3 LINE L1 -3 7782 6659 247 237 0 0 chr4 139775939 139775998 -62552349 - LTR66 LTR ERVL -158 452 394 188 67 33 0 chr4 139775998 139776028 -62552319 + (TA)n Simple_repeat Simple_repeat 1 31 0 376 173 0 56 chr4 139776042 139776221 -62552126 + (TA)n Simple_repeat Simple_repeat 2 170 0 277 83 0 0 chr4 139776222 139776258 -62552089 - THE1C LTR MaLR -339 36 1 21797 111 6 13 chr4 139777268 139781041 -62547306 - L1P3 LINE L1 -433 5721 1985 3574 231 17 35 chr4 139781029 139781045 -62547302 - L1 LINE L1 -861 5285 5270 * 2009 126 0 23 chr4 139781045 139781346 -62547001 - AluSc SINE Alu -15 294 1 3574 231 17 35 chr4 139781346 139782408 -62545939 - L1 LINE L1 -876 5270 4227 2107 194 26 2 chr4 139782410 139782838 -62545509 + L1 LINE L1 3760 4197 -1949 582 279 90 69 chr4 139782843 139783467 -62544880 + L1MC4 LINE L1 6448 7084 -958 1944 148 0 7 chr4 139783501 139783792 -62544555 - AluSx SINE Alu -21 291 3 542 297 46 21 chr4 139783810 139784137 -62544210 + L1MC4 LINE L1 7338 7672 -370 233 268 0 28 chr4 139784497 139784568 -62543779 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 1170 268 80 51 chr4 139784673 139785515 -62542832 + L1MC5 LINE L1 6742 7607 -354 2598 247 124 18 chr4 139785610 139786754 -62541593 + L1M4 LINE L1 2553 3817 -2329 632 267 35 35 chr4 139786801 139787116 -62541231 + L1MC5 LINE L1 7601 7915 -46 27 0 0 0 chr4 139787391 139787418 -62540929 + AT_rich Low_complexity Low_complexity 1 27 0 384 22 0 0 chr4 139788645 139788690 -62539657 + (TG)n Simple_repeat Simple_repeat 2 46 0 26 30 0 0 chr4 139790457 139790490 -62537857 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4 139790668 139790696 -62537651 + AT_rich Low_complexity Low_complexity 1 28 0 1040 168 0 0 chr4 139791168 139791329 -62537018 + AluSx SINE Alu 1 161 -151 285 29 0 0 chr4 139792201 139792235 -62536112 + (CA)n Simple_repeat Simple_repeat 1 34 0 185 311 48 19 chr4 139793217 139793320 -62535027 - L3 LINE CR1 -239 1338 1233 184 351 54 14 chr4 139793615 139793689 -62534658 - L2 LINE L2 -2 3270 3194 3736 183 91 1 chr4 139794351 139795107 -62533240 + LTR1B LTR ERV1 1 824 -2 29 47 0 0 chr4 139795294 139795337 -62533010 + AT_rich Low_complexity Low_complexity 1 43 0 467 236 83 67 chr4 139796251 139796612 -62531735 + L1ME LINE L1 508 874 -5196 1331 235 103 32 chr4 139797180 139797669 -62530678 + MER51C LTR ERV1 1 640 0 652 299 101 48 chr4 139797767 139798202 -62530145 - LTR38 LTR ERV1 -11 545 88 1557 171 7 40 chr4 139798329 139798628 -62529719 - AluJb SINE Alu -13 299 11 1833 248 52 24 chr4 139798850 139799488 -62528859 - LTR68 LTR ERV1 -2 738 19 985 158 6 12 chr4 139799489 139799654 -62528693 - MSTB1 LTR MaLR 0 432 269 2429 191 30 6 chr4 139799654 139800157 -62528190 - L1 LINE L1 -1071 5075 4561 1495 184 184 11 chr4 139800157 139800522 -62527825 + MSTA LTR MaLR 1 428 0 312 27 0 0 chr4 139801122 139801159 -62527188 + (TG)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr4 139801870 139801895 -62526452 + AT_rich Low_complexity Low_complexity 1 25 0 2150 98 0 19 chr4 139801908 139802223 -62526124 - AluSc SINE Alu 0 309 1 4071 71 0 54 chr4 139802250 139802324 -62526023 - L1PA7 LINE L1 0 6154 6078 2255 84 3 0 chr4 139802324 139802623 -62525724 - AluY SINE Alu -11 300 1 4071 71 0 54 chr4 139802623 139803155 -62525192 - L1PA7 LINE L1 -76 6078 5581 341 338 7 22 chr4 139803871 139804010 -62524337 - Charlie7 DNA MER1_type -2356 256 120 225 314 141 0 chr4 139804601 139804722 -62523625 + MIR SINE MIR 124 261 -1 886 258 148 0 chr4 139804816 139805060 -62523287 + MER119 DNA MER1_type 51 330 -253 546 197 14 82 chr4 139805083 139805230 -62523117 + MER119 DNA MER1_type 447 583 0 343 311 59 10 chr4 139805442 139805633 -62522714 + L1MC4a LINE L1 5672 5877 -307 1625 196 21 3 chr4 139805728 139806055 -62522292 - L1MC1 LINE L1 -15 6318 5986 423 239 6 83 chr4 139806666 139806846 -62521501 - Charlie7 DNA MER1_type -2382 230 65 1866 196 70 18 chr4 139807740 139808184 -62520163 - MLT1C LTR MaLR 0 467 1 561 320 70 12 chr4 139808651 139808895 -62519452 - MIR SINE MIR -4 258 1 925 106 7 0 chr4 139810225 139810367 -62517980 + L1PA14 LINE L1 6017 6159 -2 3426 171 45 3 chr4 139810485 139811128 -62517219 - L1PA16 LINE L1 0 6166 5497 3377 176 45 9 chr4 139810509 139811151 -62517196 - L1PA16 LINE L1 -24 6142 5478 944 227 10 0 chr4 139811145 139811352 -62516995 + L1P LINE L1 5074 5282 -864 * 1180 193 53 164 chr4 139811893 139812400 -62515947 - MLT2D LTR ERVL -6 458 8 254 204 0 37 chr4 139813611 139813719 -62514628 + (TA)n Simple_repeat Simple_repeat 1 104 0 261 163 23 39 chr4 139814432 139814561 -62513786 + (GGGTG)n Simple_repeat Simple_repeat 4 130 0 392 213 0 17 chr4 139814608 139814782 -62513565 + G-rich Low_complexity Low_complexity 1 171 0 225 178 0 0 chr4 139814928 139814973 -62513374 + LTR66 LTR ERVL 394 438 -172 2071 139 41 22 chr4 139815148 139815515 -62512832 - L1PB4 LINE L1 -1 6155 5782 459 243 0 0 chr4 139815544 139815696 -62512651 + (TA)n Simple_repeat Simple_repeat 1 152 0 1918 197 15 38 chr4 139815756 139816521 -62511826 - L1PB4 LINE L1 -517 5639 4890 4574 206 36 18 chr4 139816530 139817618 -62510729 + L1PB4 LINE L1 3760 4867 -1279 541 335 94 47 chr4 139817657 139818453 -62509894 - L1M4 LINE L1 -1714 4432 3599 638 266 42 44 chr4 139818530 139818975 -62509372 - PABL_A LTR ERV1 -74 586 1 * 1708 180 6 19 chr4 139818975 139819277 -62509070 - LTR29 LTR ERV1 -30 592 295 1193 218 0 49 chr4 139819304 139819589 -62508758 - AluJo SINE Alu -36 276 6 1574 153 84 7 chr4 139819589 139819876 -62508471 - LTR29 LTR ERV1 -313 309 1 380 259 167 38 chr4 139820338 139820631 -62507716 - MER52A LTR ERV1 -46 748 533 239 238 143 0 chr4 139820689 139820752 -62507595 - MER51A LTR ERV1 -355 279 208 438 179 12 0 chr4 139820951 139821035 -62507312 - MER61E LTR ERV1 -484 85 1 351 316 11 2 chr4 139821219 139821350 -62506997 + L1MC4 LINE L1 7302 7487 -375 254 405 29 24 chr4 139821717 139821927 -62506420 + L3 LINE CR1 1324 1534 -43 22 70 0 0 chr4 139821938 139821981 -62506366 + AT_rich Low_complexity Low_complexity 1 43 0 368 177 0 0 chr4 139822213 139822275 -62506072 + MER92B LTR ERV1 3 64 -572 3378 194 29 16 chr4 139822275 139822969 -62505378 + MER4D LTR ERV1 1 703 -200 4121 192 93 141 chr4 139822972 139824801 -62503546 - MER52A LTR ERV1 -14 1741 1 1218 144 20 5 chr4 139824801 139825002 -62503345 + MER4D LTR ERV1 700 903 0 505 213 22 78 chr4 139825623 139825853 -62502494 + MER31-int LTR ERV1 1055 1271 -3665 1439 250 27 0 chr4 139825948 139826352 -62501995 + L1MB2 LINE L1 3776 4190 -1956 2465 239 50 4 chr4 139826355 139827103 -62501244 + L1MB2 LINE L1 4290 5071 -1075 741 112 83 101 chr4 139827103 139827183 -62501164 + MSTA LTR MaLR 215 295 -133 1834 101 51 27 chr4 139827183 139827514 -62500833 + AluY SINE Alu 1 311 0 741 112 83 101 chr4 139827514 139827602 -62500745 + MSTA LTR MaLR 295 380 -48 3124 227 55 20 chr4 139827604 139827820 -62500527 + L1MB2 LINE L1 5052 5259 -912 180 97 0 0 chr4 139827820 139827851 -62500496 + (CA)n Simple_repeat Simple_repeat 2 32 0 3124 227 55 20 chr4 139827851 139828707 -62499640 + L1MB2 LINE L1 5259 6164 -7 282 246 32 40 chr4 139828745 139828871 -62499476 + MER31-int LTR ERV1 1310 1434 -3502 440 237 39 48 chr4 139829021 139829228 -62499119 + MER31-int LTR ERV1 1686 1890 -3046 27 49 0 0 chr4 139829915 139829956 -62498391 + AT_rich Low_complexity Low_complexity 1 41 0 480 228 18 9 chr4 139830260 139830374 -62497973 + MER31-int LTR ERV1 3173 3287 -1649 699 294 35 66 chr4 139830449 139830902 -62497445 + MER31-int LTR ERV1 3330 3768 -1168 2121 118 7 0 chr4 139831083 139831379 -62496968 + AluSp SINE Alu 1 298 -15 213 294 35 24 chr4 139831622 139831707 -62496640 - MIR SINE MIR -110 152 67 28868 31 1 0 chr4 139831830 139836099 -62492248 + L1PA3 LINE L1 1884 6155 0 192 206 39 88 chr4 139836708 139836810 -62491537 + MIR SINE MIR 110 206 -56 186 103 0 0 chr4 139837306 139837335 -62491012 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 390 303 133 28 chr4 139837731 139837942 -62490405 + MIR SINE MIR 30 262 0 1799 176 3 0 chr4 139838286 139838575 -62489772 - AluJb SINE Alu -22 290 1 21 36 0 0 chr4 139839075 139839103 -62489244 + AT_rich Low_complexity Low_complexity 1 28 0 255 264 85 0 chr4 139839489 139839595 -62488752 - L1M4 LINE L1 -1308 4838 4724 1009 167 0 0 chr4 139839724 139839898 -62488449 + FAM SINE Alu 1 174 -1 25 0 0 0 chr4 139840250 139840275 -62488072 + AT_rich Low_complexity Low_complexity 1 25 0 701 304 0 0 chr4 139841219 139841400 -62486947 + MIR SINE MIR 6 186 -76 255 319 114 53 chr4 139841430 139841511 -62486836 - L2 LINE L2 -541 2773 2698 1875 138 7 24 chr4 139841511 139841808 -62486539 + AluSq SINE Alu 1 292 -21 255 319 114 53 chr4 139841808 139841989 -62486358 - L2 LINE L2 -616 2698 2495 271 322 163 30 chr4 139842465 139842698 -62485649 - L2 LINE L2 -815 2499 2236 1096 218 166 38 chr4 139842889 139843335 -62485012 - MLT1D LTR MaLR -2 503 1 309 294 94 78 chr4 139843941 139844196 -62484151 - MIR SINE MIR -1 261 3 245 29 29 0 chr4 139846780 139846814 -62481533 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2281 98 0 0 chr4 139848524 139848821 -62479526 + AluSx SINE Alu 4 300 -12 1768 54 0 0 chr4 139851054 139851276 -62477071 - L1PA4 LINE L1 0 6155 5934 23 33 0 0 chr4 139851605 139851635 -62476712 + AT_rich Low_complexity Low_complexity 1 30 0 1372 273 38 8 chr4 139851678 139852078 -62476269 - MLT1C LTR MaLR -3 464 53 36 23 0 0 chr4 139852791 139852834 -62475513 + AT_rich Low_complexity Low_complexity 1 43 0 2024 107 13 3 chr4 139853057 139853355 -62474992 + AluY SINE Alu 1 301 -10 22 0 0 0 chr4 139853740 139853762 -62474585 + AT_rich Low_complexity Low_complexity 1 22 0 389 135 0 27 chr4 139853784 139853858 -62474489 - L1MC2 LINE L1 0 6344 6273 494 366 29 12 chr4 139853954 139854200 -62474147 + MIR SINE MIR 3 252 -10 444 354 84 18 chr4 139854211 139854437 -62473910 + MIR SINE MIR 1 241 -21 24 53 0 0 chr4 139854594 139854632 -62473715 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr4 139855610 139855638 -62472709 + AT_rich Low_complexity Low_complexity 1 28 0 602 257 14 7 chr4 139856152 139856296 -62472051 - LTR40b LTR ERVL 0 462 318 991 222 10 0 chr4 139856298 139856496 -62471851 - MER52A LTR ERV1 0 1755 1556 1069 253 101 11 chr4 139857443 139857556 -62470791 + AluJo SINE Alu 1 102 -200 246 32 0 0 chr4 139857556 139857587 -62470760 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 1069 253 101 11 chr4 139857587 139857750 -62470597 + AluJo SINE Alu 102 302 0 21 0 0 0 chr4 139857994 139858015 -62470332 + AT_rich Low_complexity Low_complexity 1 21 0 8813 46 2 1 chr4 139858641 139859711 -62468636 - MER11C LTR ERVK 0 1071 1 25 31 0 0 chr4 139859731 139859763 -62468584 + AT_rich Low_complexity Low_complexity 1 32 0 673 330 83 22 chr4 139859944 139860305 -62468042 + LTR16A LTR ERVL 1 383 -67 1346 203 85 28 chr4 139860325 139860689 -62467658 + MLT1B LTR MaLR 3 387 -3 2405 341 41 8 chr4 139860741 139861785 -62466562 + HERV16 LTR ERVL 2 1080 -3916 248 150 0 0 chr4 139862116 139862156 -62466191 - MLT2C1 LTR ERVL -8 389 350 1456 245 74 3 chr4 139862206 139862560 -62465787 - MLT2D LTR ERVL -42 478 1 256 295 13 13 chr4 139862671 139862749 -62465598 + HERV16 LTR ERVL 1687 1764 -3232 669 250 36 40 chr4 139862785 139863009 -62465338 + HERV16 LTR ERVL 2015 2237 -2759 270 0 0 0 chr4 139863241 139863271 -62465076 + (CA)n Simple_repeat Simple_repeat 2 31 0 786 240 160 4 chr4 139863271 139863496 -62464851 + MLT1C LTR MaLR 206 465 -2 4683 166 50 28 chr4 139863541 139863961 -62464386 + L1MA7 LINE L1 4944 5353 -938 2303 98 0 3 chr4 139863961 139864268 -62464079 + AluY SINE Alu 1 306 -5 4683 166 50 28 chr4 139864268 139865164 -62463183 + L1MA7 LINE L1 5353 6291 0 23 68 0 0 chr4 139866073 139866117 -62462230 + AT_rich Low_complexity Low_complexity 1 44 0 2205 102 3 3 chr4 139866473 139866767 -62461580 - AluSx SINE Alu -18 294 1 279 0 0 0 chr4 139866847 139866878 -62461469 + (TG)n Simple_repeat Simple_repeat 1 31 0 824 248 48 68 chr4 139869235 139869545 -62458802 + MLT2D LTR ERVL 3 306 -108 593 161 0 48 chr4 139869547 139869671 -62458676 + AluSg/x SINE Alu 174 291 -19 26 0 0 0 chr4 139870135 139870161 -62458186 + AT_rich Low_complexity Low_complexity 1 26 0 278 115 19 0 chr4 139872669 139872721 -62455626 + (TA)n Simple_repeat Simple_repeat 1 53 0 1878 141 7 3 chr4 139872721 139873011 -62455336 - AluSx SINE Alu -21 291 1 21 0 0 0 chr4 139873014 139873035 -62455312 + AT_rich Low_complexity Low_complexity 1 21 0 1986 119 11 0 chr4 139873451 139873750 -62454597 + AluSc SINE Alu 1 302 0 216 0 0 0 chr4 139874322 139874346 -62454001 + (T)n Simple_repeat Simple_repeat 1 24 0 27 0 0 0 chr4 139874462 139874489 -62453858 + AT_rich Low_complexity Low_complexity 1 27 0 2099 79 0 4 chr4 139875072 139875349 -62452998 + AluY SINE Alu 1 276 -35 414 0 0 0 chr4 139875357 139875403 -62452944 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 524 297 86 19 chr4 139875491 139875700 -62452647 + MIR SINE MIR 40 262 0 1038 291 76 54 chr4 139876393 139877104 -62451243 - Charlie7 DNA MER1_type -287 2325 1588 1881 115 4 0 chr4 139877104 139877364 -62450983 + AluSx SINE Alu 38 298 -14 1038 291 76 54 chr4 139877364 139877577 -62450770 - Charlie7 DNA MER1_type -1024 1588 1381 592 289 135 64 chr4 139877602 139878372 -62449975 + L2 LINE L2 2445 3252 -61 248 302 0 0 chr4 139878608 139878694 -62449653 - Charlie7 DNA MER1_type -1435 1177 1092 704 241 96 80 chr4 139878694 139879158 -62449189 + MER41B LTR ERV1 98 478 0 519 291 100 51 chr4 139879159 139879869 -62448478 - Charlie7 DNA MER1_type -1517 1095 351 225 256 37 0 chr4 139881234 139881316 -62447031 + (TA)n Simple_repeat Simple_repeat 2 86 0 204 179 0 0 chr4 139881468 139881507 -62446840 + (TA)n Simple_repeat Simple_repeat 2 40 0 1231 265 60 108 chr4 139882175 139882821 -62445526 + MLT1E2 LTR MaLR 10 626 0 207 0 0 0 chr4 139883388 139883411 -62444936 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2008 108 0 0 chr4 139883432 139883692 -62444655 - AluSq SINE Alu -51 262 3 181 30 91 0 chr4 139884010 139884043 -62444304 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 4910 167 50 5 chr4 139884048 139885190 -62443157 - L1PA16 LINE L1 -9 6157 4966 1933 185 14 31 chr4 139885192 139885614 -62442733 + L1PA16 LINE L1 4541 4955 -1191 279 392 0 14 chr4 139886107 139886255 -62442092 - MLT1I LTR MaLR -208 201 56 21 0 0 0 chr4 139886337 139886358 -62441989 + AT_rich Low_complexity Low_complexity 1 21 0 1470 214 3 3 chr4 139886377 139886662 -62441685 + AluJo SINE Alu 2 286 -26 1512 299 99 31 chr4 139886965 139888102 -62440245 + HAL1 LINE L1 147 1361 -1146 278 103 15 29 chr4 139888115 139888183 -62440164 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 2359 84 0 3 chr4 139888413 139888712 -62439635 + AluY SINE Alu 1 298 -13 429 59 0 0 chr4 139888759 139888810 -62439537 + (TA)n Simple_repeat Simple_repeat 1 51 0 28 71 0 0 chr4 139888810 139888866 -62439481 + AT_rich Low_complexity Low_complexity 1 56 0 805 195 35 3 chr4 139888875 139889053 -62439294 - MER61D LTR ERV1 0 752 273 768 241 6 11 chr4 139889541 139889715 -62438632 + FRAM SINE Alu 1 171 -5 641 356 84 34 chr4 139890497 139891415 -62436932 + ERVL LTR ERVL 3096 4059 -1705 24 53 0 0 chr4 139891530 139891568 -62436779 + AT_rich Low_complexity Low_complexity 1 38 0 191 254 16 32 chr4 139891844 139891907 -62436440 - L2 LINE L2 0 3272 3211 247 311 38 9 chr4 139892590 139892696 -62435651 - L2 LINE L2 -1 3312 3204 2619 182 33 17 chr4 139893144 139893721 -62434626 - LTR60 LTR ERV1 0 586 1 205 195 0 0 chr4 139893888 139893929 -62434418 + T-rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr4 139896184 139896216 -62432131 + AT_rich Low_complexity Low_complexity 1 32 0 4909 162 12 48 chr4 139896234 139896544 -62431803 - L1MA8 LINE L1 -35 6256 5937 1540 206 35 3 chr4 139896544 139896830 -62431517 - AluJo SINE Alu -17 295 1 4909 162 12 48 chr4 139896830 139897188 -62431159 - L1MA8 LINE L1 -354 5937 5638 2038 109 32 3 chr4 139897188 139897472 -62430875 - AluSg SINE Alu -18 292 1 4909 162 12 48 chr4 139897472 139897875 -62430472 - L1MA8 LINE L1 -653 5638 5222 268 285 53 66 chr4 139897879 139898030 -62430317 + MIR SINE MIR 94 242 -20 599 216 61 40 chr4 139898097 139898245 -62430102 + MER20 DNA MER1_type 2 152 -67 382 266 55 28 chr4 139899071 139899180 -62429167 + MER20 DNA MER1_type 102 213 -6 730 310 27 16 chr4 139900609 139900867 -62427480 + LTR16A LTR ERVL 177 437 -13 1812 125 50 0 chr4 139901100 139901216 -62427131 + AluSq SINE Alu 1 110 -203 183 42 0 0 chr4 139901216 139901240 -62427107 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1812 125 50 0 chr4 139901240 139901403 -62426944 + AluSq SINE Alu 110 294 -19 198 0 0 0 chr4 139901407 139901429 -62426918 + (TAA)n Simple_repeat Simple_repeat 3 24 0 42 86 0 0 chr4 139902181 139902286 -62426061 + AT_rich Low_complexity Low_complexity 1 105 0 676 270 55 21 chr4 139902334 139902623 -62425724 - L1MC4 LINE L1 -718 7324 7026 823 248 54 90 chr4 139902684 139903548 -62424799 + L1MC4 LINE L1 5993 6618 -1190 352 329 76 21 chr4 139903784 139904021 -62424326 + L2 LINE L2 2525 2774 -540 342 397 75 0 chr4 139904039 139904253 -62424094 + MIR SINE MIR 2 231 -31 2079 186 28 12 chr4 139904271 139904877 -62423470 + MER50 LTR ERV1 1 711 -23 9017 53 102 9 chr4 139905414 139906667 -62421680 - L1P LINE L1 -4567 1579 210 7032 24 0 0 chr4 139906667 139907490 -62420857 + L1PA3 LINE L1 5332 6154 -1 24 32 0 0 chr4 139908256 139908287 -62420060 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 139908620 139908641 -62419706 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr4 139908746 139908777 -62419570 + AT_rich Low_complexity Low_complexity 1 31 0 2150 105 13 0 chr4 139910375 139910679 -62417668 + AluY SINE Alu 1 308 -3 928 210 6 6 chr4 139911511 139911692 -62416655 - AluJo SINE Alu -9 303 123 386 206 35 6 chr4 139911692 139911862 -62416485 + (TA)n Simple_repeat Simple_repeat 2 176 0 250 250 79 0 chr4 139911862 139911938 -62416409 + L1MC4 LINE L1 6611 6692 -1350 23 68 0 0 chr4 139911938 139911982 -62416365 + AT_rich Low_complexity Low_complexity 1 44 0 569 204 0 0 chr4 139912457 139912560 -62415787 - L1MC1 LINE L1 -8 6325 6223 26 50 0 0 chr4 139912810 139912850 -62415497 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr4 139913219 139913241 -62415106 + AT_rich Low_complexity Low_complexity 1 22 0 6503 80 10 26 chr4 139913242 139914758 -62413589 - L1PA7 LINE L1 -12 6142 4637 2243 107 7 3 chr4 139918467 139918777 -62409570 + AluSq SINE Alu 1 311 -2 201 121 0 0 chr4 139919520 139919553 -62408794 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2000 254 28 35 chr4 139919996 139920669 -62407678 + LTR68 LTR ERV1 1 735 -5 253 116 0 0 chr4 139921397 139921440 -62406907 + L1MA3 LINE L1 6263 6305 0 1463 194 31 59 chr4 139921498 139921970 -62406377 + MER89 LTR ERV1 3 559 0 230 286 95 36 chr4 139922513 139922597 -62405750 - L3b LINE CR1 -121 1462 1374 184 170 38 0 chr4 139922965 139923018 -62405329 + (TA)n Simple_repeat Simple_repeat 1 55 0 220 271 14 14 chr4 139923340 139923410 -62404937 + MIR SINE MIR 193 262 0 356 257 70 55 chr4 139925034 139925377 -62402970 + L1M4 LINE L1 1210 1557 -4985 1183 258 128 19 chr4 139925417 139925956 -62402391 + L1MD2 LINE L1 5369 5966 -393 * 1366 263 36 18 chr4 139925653 139926159 -62402188 + L1MB8 LINE L1 5663 6177 -1 2789 10 0 0 chr4 139926685 139926995 -62401352 - AluY SINE Alu -1 310 1 279 0 0 0 chr4 139927677 139927708 -62400639 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 469 314 69 5 chr4 139929405 139929593 -62398754 - MLT1J2 LTR MaLR -227 223 24 31 26 0 0 chr4 139929653 139929691 -62398656 + AT_rich Low_complexity Low_complexity 1 38 0 1379 103 0 76 chr4 139930453 139930677 -62397670 + MER30 DNA MER1_type 1 207 -23 22 35 0 0 chr4 139930750 139930779 -62397568 + AT_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr4 139930954 139930984 -62397363 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 139931216 139931238 -62397109 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 139931554 139931576 -62396771 + AT_rich Low_complexity Low_complexity 1 22 0 837 268 5 5 chr4 139932338 139932532 -62395815 + MER58A DNA MER1_type 31 224 0 235 223 0 43 chr4 139932844 139932938 -62395409 + (TA)n Simple_repeat Simple_repeat 2 91 0 441 0 0 0 chr4 139932997 139933046 -62395301 + (TATG)n Simple_repeat Simple_repeat 4 52 0 2322 211 11 2 chr4 139933064 139933510 -62394837 - L1M3f LINE L1 -4873 455 6 26 93 0 0 chr4 139934559 139934634 -62393713 + AT_rich Low_complexity Low_complexity 1 75 0 768 122 0 0 chr4 139934839 139934946 -62393401 + U6 snRNA snRNA 1 107 0 5847 150 19 10 chr4 139934946 139936756 -62391591 + L1PA10 LINE L1 4337 6158 -10 225 94 47 47 chr4 139937081 139937145 -62391202 + (TA)n Simple_repeat Simple_repeat 2 65 0 182 75 45 60 chr4 139937223 139937290 -62391057 + (TA)n Simple_repeat Simple_repeat 2 67 0 341 83 0 118 chr4 139937315 139937519 -62390828 + (TA)n Simple_repeat Simple_repeat 1 180 0 415 159 49 26 chr4 139937715 139938023 -62390324 + (TA)n Simple_repeat Simple_repeat 1 315 0 21 57 0 0 chr4 139938230 139938265 -62390082 + AT_rich Low_complexity Low_complexity 1 35 0 300 259 24 0 chr4 139939300 139939385 -62388962 + MER94 DNA DNA 3 89 -45 739 282 100 69 chr4 139940086 139940381 -62387966 - L1ME3A LINE L1 -28 6142 5858 1832 219 26 18 chr4 139940381 139940837 -62387510 + MER74C LTR ERVL 1 460 0 739 282 100 69 chr4 139940837 139942316 -62386031 - L1ME3A LINE L1 -312 5858 4223 1653 185 77 0 chr4 139942316 139942656 -62385691 + MER47A DNA MER2_type 1 366 0 739 282 100 69 chr4 139942656 139943340 -62385007 - L1ME3A LINE L1 -1947 4223 3562 349 250 83 30 chr4 139943564 139943732 -62384615 - L1ME3A LINE L1 -2840 3306 3130 865 217 107 79 chr4 139944308 139944663 -62383684 + MLT1A1 LTR MaLR 1 365 0 23 33 0 0 chr4 139945192 139945222 -62383125 + AT_rich Low_complexity Low_complexity 1 30 0 291 71 0 0 chr4 139945475 139945517 -62382830 + (TG)n Simple_repeat Simple_repeat 2 43 0 247 319 0 11 chr4 139945520 139945611 -62382736 - L1MC4 LINE L1 -1343 6699 6610 * 251 236 45 45 chr4 139945533 139945622 -62382725 + L1MC4 LINE L1 6615 6703 -1339 244 261 22 0 chr4 139945645 139945737 -62382610 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 231 309 74 60 chr4 139946811 139946960 -62381387 + MIR3 SINE MIR 2 152 -56 1272 309 73 40 chr4 139947062 139947744 -62380603 - MER21B LTR ERV1 -129 734 30 364 328 111 34 chr4 139947836 139948388 -62379959 - L1M4 LINE L1 -2677 4120 3527 15459 178 33 59 chr4 139948447 139951858 -62376489 - HUERS-P1 LTR ERV1 -2522 5015 1519 207 0 0 0 chr4 139951858 139951881 -62376466 + (GA)n Simple_repeat Simple_repeat 2 24 0 15459 178 33 59 chr4 139951881 139952295 -62376052 - HUERS-P1 LTR ERV1 -6018 1519 1096 210 37 0 0 chr4 139952295 139952322 -62376025 + (G)n Simple_repeat Simple_repeat 1 27 0 15459 178 33 59 chr4 139952322 139952812 -62375535 - HUERS-P1 LTR ERV1 -6441 1096 324 3594 114 49 39 chr4 139952975 139953589 -62374758 - HUERS-P1 LTR ERV1 -5626 637 18 937 159 14 0 chr4 139953596 139953741 -62374606 - LTR8 LTR ERV1 0 691 545 4214 234 31 24 chr4 139953749 139954602 -62373745 - L1PA13 LINE L1 -3782 3015 2169 2167 133 0 0 chr4 139954602 139954903 -62373444 + AluSx SINE Alu 1 301 -11 4214 234 31 24 chr4 139954903 139955757 -62372590 - L1PA13 LINE L1 -4628 2169 1280 2305 302 11 23 chr4 139955747 139956476 -62371871 - L1PA13 LINE L1 -6066 721 2 * 522 287 60 5 chr4 139957304 139957520 -62370827 - L1MEd LINE L1 -4997 1122 895 22 0 0 0 chr4 139957600 139957622 -62370725 + AT_rich Low_complexity Low_complexity 1 22 0 44 46 0 0 chr4 139957700 139957765 -62370582 + AT_rich Low_complexity Low_complexity 1 65 0 346 223 42 24 chr4 139958107 139958273 -62370074 + (TA)n Simple_repeat Simple_repeat 2 170 0 29 47 0 0 chr4 139959059 139959102 -62369245 + AT_rich Low_complexity Low_complexity 1 43 0 2068 121 24 0 chr4 139959252 139959549 -62368798 - AluSp SINE Alu -6 307 4 1963 188 33 32 chr4 139959847 139960397 -62367950 + MLT2A2 LTR ERVL 1 554 0 595 13 53 0 chr4 139961917 139961992 -62366355 + L1PA6 LINE L1 6074 6152 -2 21 71 0 0 chr4 139963291 139963333 -62365014 + AT_rich Low_complexity Low_complexity 1 42 0 227 151 75 19 chr4 139963748 139963801 -62364546 - LTR33A LTR ERVL -4 519 464 * 1740 294 122 63 chr4 139963794 139965707 -62362640 + L1M2 LINE L1 7 2022 -5187 1876 210 27 4 chr4 139965725 139966205 -62362142 + L1M2 LINE L1 2125 2615 -4594 242 200 89 44 chr4 139966305 139966395 -62361952 + L1M2 LINE L1 3952 4045 -3163 12193 172 20 15 chr4 140066395 140068917 -62259430 - L1P LINE L1 -743 5403 2897 524 296 133 18 chr4 140068919 140069145 -62259202 - L1PA13 LINE L1 -5674 1113 862 1937 240 5 3 chr4 140069206 140069589 -62258758 - L1PA13 LINE L1 -6054 733 350 345 200 0 15 chr4 140069597 140069662 -62258685 - L1PA12 LINE L1 -5577 2004 1941 18733 36 1 8 chr4 140069762 140072129 -62256218 - L1P LINE L1 -1155 4991 2641 12450 48 0 0 chr4 140072130 140073692 -62254655 + L1P LINE L1 1078 2639 -3507 21 0 0 0 chr4 140073751 140073772 -62254575 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 140074105 140074129 -62254218 + AT_rich Low_complexity Low_complexity 1 24 0 3434 117 23 5 chr4 140074144 140074709 -62253638 - L1PA13 LINE L1 0 6163 5589 343 235 15 37 chr4 140074728 140074864 -62253483 - L1PA13 LINE L1 -548 5615 5483 3947 192 109 8 chr4 140075387 140076594 -62251753 - L1PA12 LINE L1 -5654 1927 1 342 328 78 25 chr4 140076603 140076887 -62251460 - L1MC/D LINE L1 -645 5580 5282 346 321 28 9 chr4 140077141 140077250 -62251097 + MIR SINE MIR 7 117 -145 31 58 0 0 chr4 140077390 140077442 -62250905 + AT_rich Low_complexity Low_complexity 1 52 0 1036 226 82 108 chr4 140077904 140078329 -62250018 - MLT1E1 LTR MaLR -2 652 239 311 317 112 23 chr4 140078381 140078640 -62249707 - L1MC/D LINE L1 -2694 3435 3154 453 298 58 71 chr4 140078651 140078755 -62249592 - L1MC/D LINE L1 -4989 1130 1026 1782 218 134 71 chr4 140078755 140079402 -62248945 - MER76 LTR ERV 0 688 1 453 298 58 71 chr4 140079402 140079623 -62248724 - L1MC/D LINE L1 -5093 1026 809 2272 167 54 56 chr4 140079822 140080320 -62248027 + LOR1a LTR ERV1 1 497 0 218 383 86 11 chr4 140081071 140081246 -62247101 + MIR3 SINE MIR 21 208 0 481 313 72 46 chr4 140081533 140081860 -62246487 - MLT1I LTR MaLR -8 401 63 3630 155 14 78 chr4 140081860 140082698 -62245649 + LTR1 LTR ERV1 1 785 0 481 313 72 46 chr4 140082698 140082715 -62245632 - MLT1I LTR MaLR -346 63 48 22 0 0 0 chr4 140083559 140083581 -62244766 + AT_rich Low_complexity Low_complexity 1 22 0 230 310 75 21 chr4 140084219 140084458 -62243889 + L1MEd LINE L1 941 1192 -4927 628 266 12 29 chr4 140084791 140084964 -62243383 + MER69A DNA AcHobo 8 177 0 968 178 0 24 chr4 140086187 140086356 -62241991 + FRAM SINE Alu 1 162 -14 1304 241 0 22 chr4 140086377 140086693 -62241654 + AluJo SINE Alu 4 312 0 1719 131 4 0 chr4 140086891 140087136 -62241211 + L1P3 LINE L1 8 253 -6208 4788 33 0 3 chr4 140087243 140087814 -62240533 + L1PA3 LINE L1 5587 6155 0 23 54 0 0 chr4 140088128 140088165 -62240182 + AT_rich Low_complexity Low_complexity 1 37 0 758 168 21 17 chr4 140088572 140089095 -62239252 + GA-rich Low_complexity Low_complexity 1 525 0 194 331 151 6 chr4 140089328 140089494 -62238853 + L2 LINE L2 133 322 -2992 1966 227 58 37 chr4 140089913 140090190 -62238157 + MER90 LTR ERV1 1 271 -343 1377 206 39 18 chr4 140090190 140090472 -62237875 - AluJb SINE Alu -24 288 1 1966 227 58 37 chr4 140090472 140090792 -62237555 + MER90 LTR ERV1 271 611 -3 446 341 84 60 chr4 140090800 140091456 -62236891 + L2 LINE L2 727 1398 -1916 1136 216 83 46 chr4 140091490 140091814 -62236533 + MLT1A1 LTR MaLR 18 353 -12 628 336 92 19 chr4 140091825 140092239 -62236108 + L2 LINE L2 1394 1837 -1477 297 295 58 13 chr4 140092288 140092444 -62235903 - MER104 DNA Tc2 -3 177 15 306 247 21 21 chr4 140092514 140092611 -62235736 + LTR52 LTR ERVL 3 99 -322 1344 281 114 27 chr4 140092664 140093181 -62235166 + REP3 LTR ERV 1 562 0 2008 203 39 43 chr4 140093283 140093795 -62234552 - LTR54 LTR ERV1 0 510 1 372 183 56 0 chr4 140093952 140094023 -62234324 + AluJ/FRAM SINE Alu 222 296 -6 27 49 0 0 chr4 140094215 140094256 -62234091 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr4 140094667 140094689 -62233658 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 140094791 140094812 -62233535 + AT_rich Low_complexity Low_complexity 1 21 0 387 349 55 16 chr4 140095151 140095406 -62232941 + LTR16C LTR ERVL 227 491 0 277 289 16 23 chr4 140095594 140095722 -62232625 + (TA)n Simple_repeat Simple_repeat 1 127 0 1453 135 12 100 chr4 140095750 140096091 -62232256 + L1MA10 LINE L1 6024 6334 0 318 132 26 40 chr4 140096192 140096268 -62232079 - L1MC2 LINE L1 -10 6334 6260 2633 209 3 23 chr4 140096268 140096841 -62231506 - L1MC2 LINE L1 -455 5889 5328 6028 96 29 2 chr4 140096849 140097576 -62230771 - L1PA11 LINE L1 -4 6170 5464 1619 163 50 71 chr4 140097576 140097957 -62230390 - THE1C LTR MaLR 0 375 3 6028 96 29 2 chr4 140097957 140098826 -62229521 - L1PA11 LINE L1 -710 5464 4560 4816 159 19 22 chr4 140098859 140098889 -62229458 - L1PA11 LINE L1 -1583 4563 4534 4082 33 2 4 chr4 140098889 140099380 -62228967 + L1PA5 LINE L1 5665 6154 0 4816 159 19 22 chr4 140099380 140100249 -62228098 - L1PA11 LINE L1 -1612 4534 3667 28604 125 20 21 chr4 140100374 140106455 -62221892 + L1PA7 LINE L1 294 6468 -1 27 81 0 0 chr4 140106489 140106551 -62221796 + AT_rich Low_complexity Low_complexity 1 62 0 411 303 137 47 chr4 140106850 140107450 -62220897 - L1ME3A LINE L1 -243 5927 5257 192 186 0 0 chr4 140107535 140107594 -62220753 + (TA)n Simple_repeat Simple_repeat 2 60 0 23 0 0 0 chr4 140107618 140107641 -62220706 + AT_rich Low_complexity Low_complexity 1 23 0 2781 112 36 27 chr4 140108100 140108548 -62219799 - MER4D LTR ERV1 0 903 452 21 57 0 0 chr4 140108760 140108795 -62219552 + AT_rich Low_complexity Low_complexity 1 35 0 1574 184 54 12 chr4 140110011 140110343 -62218004 + L1PA10 LINE L1 5823 6168 0 2613 156 38 47 chr4 140110345 140110897 -62217450 + L1PB4 LINE L1 5601 6154 -2 1537 260 33 61 chr4 140111037 140111829 -62216518 - L1ME2 LINE L1 -179 5985 5232 2112 113 0 14 chr4 140111829 140112121 -62216226 - AluSc SINE Alu -21 288 1 1537 260 33 61 chr4 140112121 140112355 -62215992 - L1ME2 LINE L1 -932 5232 4993 1088 283 14 0 chr4 140112495 140112849 -62215498 + L1MEc LINE L1 486 844 -5552 2085 61 0 47 chr4 140113203 140113482 -62214865 + AluY SINE Alu 1 266 -45 1063 153 18 0 chr4 140113584 140113754 -62214593 - L1P LINE L1 -2448 3698 3526 1475 119 14 0 chr4 140113754 140113973 -62214374 + AluSq SINE Alu 92 313 0 6905 65 8 91 chr4 140114017 140115018 -62213329 - L1PA5 LINE L1 -13 6141 5162 233 260 0 0 chr4 140115327 140115377 -62212970 + (TCCA)n Simple_repeat Simple_repeat 4 53 0 324 323 31 71 chr4 140115888 140116142 -62212205 - L2 LINE L2 -38 3275 3032 220 381 8 17 chr4 140116290 140116408 -62211939 - L2 LINE L2 -575 2739 2623 17461 110 26 1 chr4 140117546 140120193 -62208154 - L1PA7 LINE L1 -1560 4586 1876 6739 64 10 0 chr4 140120193 140121731 -62206616 + L1PA7 LINE L1 4604 6153 -1 192 40 0 0 chr4 140121976 140122001 -62206346 + (C)n Simple_repeat Simple_repeat 1 25 0 841 55 9 0 chr4 140122131 140122240 -62206107 + L1PA7 LINE L1 6044 6153 -1 22 35 0 0 chr4 140122466 140122495 -62205852 + AT_rich Low_complexity Low_complexity 1 29 0 823 318 38 36 chr4 140122630 140123023 -62205324 + MLT1E3 LTR MaLR 214 607 -17 22 35 0 0 chr4 140123033 140123062 -62205285 + AT_rich Low_complexity Low_complexity 1 29 0 1618 190 49 64 chr4 140123186 140123576 -62204771 + MLT1B LTR MaLR 1 384 -6 527 178 42 0 chr4 140123713 140123831 -62204516 + L1MA7 LINE L1 5932 6054 -237 22 35 0 0 chr4 140123930 140123959 -62204388 + AT_rich Low_complexity Low_complexity 1 29 0 194 61 0 30 chr4 140124452 140124485 -62203862 + (TTAAA)n Simple_repeat Simple_repeat 2 33 0 998 218 20 105 chr4 140124666 140125065 -62203282 - MLT1A1 LTR MaLR 0 365 1 2423 109 14 0 chr4 140125737 140126087 -62202260 - THE1A LTR MaLR 0 355 1 10763 112 8 7 chr4 140126091 140127666 -62200681 - THE1A-int LTR MaLR -4 1576 1 2514 92 23 3 chr4 140127666 140128014 -62200333 - THE1A LTR MaLR 0 355 1 31 68 0 0 chr4 140129062 140129121 -62199226 + AT_rich Low_complexity Low_complexity 1 59 0 22 70 0 0 chr4 140129365 140129408 -62198939 + AT_rich Low_complexity Low_complexity 1 43 0 1804 239 2 11 chr4 140129710 140130154 -62198193 + L1MB1 LINE L1 4423 4862 -1284 343 108 0 6 chr4 140130154 140130213 -62198134 - MLT2A1 LTR ERVL 0 444 396 378 209 22 14 chr4 140130213 140130352 -62197995 + (TA)n Simple_repeat Simple_repeat 1 140 0 2950 88 12 0 chr4 140130352 140130752 -62197595 - MLT2A1 LTR ERVL -39 405 1 375 231 13 0 chr4 140130752 140130830 -62197517 + L1MB1 LINE L1 4858 4936 -1210 2379 175 50 53 chr4 140130841 140130903 -62197444 + L1MB1 LINE L1 5563 5624 -544 1906 154 7 0 chr4 140130903 140131209 -62197138 + AluSx SINE Alu 5 312 0 2379 175 50 53 chr4 140131209 140131730 -62196617 + L1MB1 LINE L1 5624 6107 -61 1794 161 74 5 chr4 140131730 140132108 -62196239 + L1MA3 LINE L1 5902 6305 0 2379 175 50 53 chr4 140132108 140132169 -62196178 + L1MB1 LINE L1 6107 6167 -1 224 250 188 0 chr4 140133121 140133201 -62195146 - L2 LINE L2 0 3313 3219 29 28 0 0 chr4 140133476 140133512 -62194835 + AT_rich Low_complexity Low_complexity 1 36 0 218 339 83 9 chr4 140134440 140134549 -62193798 - L2 LINE L2 -1 3271 3155 647 164 0 36 chr4 140135512 140135622 -62192725 + MER58B DNA MER1_type 233 338 -3 1500 191 50 108 chr4 140135712 140136198 -62192149 - MER66A LTR ERV1 -1 477 100 43 35 0 0 chr4 140136636 140136693 -62191654 + AT_rich Low_complexity Low_complexity 1 57 0 435 52 0 0 chr4 140137247 140137305 -62191042 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 207 0 0 0 chr4 140138420 140138443 -62189904 + (TTA)n Simple_repeat Simple_repeat 1 23 0 4010 191 133 21 chr4 140138443 140139232 -62189115 - L1PA6 LINE L1 -24 6130 5254 12992 68 5 1 chr4 140139240 140140957 -62187390 + L1PA6 LINE L1 3527 5249 -897 332 262 35 7 chr4 140141153 140141294 -62187053 + (TA)n Simple_repeat Simple_repeat 1 145 0 189 331 89 65 chr4 140141646 140141770 -62186577 + MIR3 SINE MIR 49 175 -33 1268 200 35 62 chr4 140142292 140142679 -62185668 - MER67C LTR ERV1 -241 273 3 935 273 53 65 chr4 140143634 140144143 -62184204 + L1ME1 LINE L1 5566 6068 -98 3882 203 84 28 chr4 140145039 140145436 -62182911 + L1MC3 LINE L1 6684 7057 -728 3998 193 8 8 chr4 140145436 140146168 -62182179 - MER44D DNA MER2_type 0 605 2 3882 203 84 28 chr4 140146168 140146813 -62181534 + L1MC3 LINE L1 7057 7785 0 21 36 0 0 chr4 140146894 140146922 -62181425 + AT_rich Low_complexity Low_complexity 1 28 0 240 184 0 0 chr4 140147808 140147857 -62180490 + (CA)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr4 140148354 140148376 -62179971 + AT_rich Low_complexity Low_complexity 1 22 0 211 338 15 0 chr4 140149811 140149879 -62178468 + L2 LINE L2 3204 3272 0 1288 184 27 92 chr4 140150363 140150576 -62177771 - MLT1A1 LTR MaLR -19 346 166 2113 118 0 0 chr4 140150576 140150865 -62177482 + AluSx SINE Alu 1 289 -23 1288 184 27 92 chr4 140150865 140151021 -62177326 - MLT1A1 LTR MaLR -199 166 1 678 240 40 11 chr4 140151021 140151196 -62177151 - MIR SINE MIR -52 210 31 2339 68 10 0 chr4 140151923 140152219 -62176128 + AluY SINE Alu 1 299 -12 2084 130 0 0 chr4 140152342 140152650 -62175697 - AluSx SINE Alu -4 308 1 11760 225 23 18 chr4 140154154 140158237 -62170110 + L1PA12 LINE L1 48 4972 -2612 216 0 0 0 chr4 140159693 140159717 -62168630 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 967 244 31 44 chr4 140159834 140160153 -62168194 - PABL_B LTR ERV1 0 667 353 275 343 14 14 chr4 140160165 140160305 -62168042 - PABL_A LTR ERV1 -463 197 58 226 209 44 55 chr4 140160313 140160404 -62167943 + L1M1 LINE L1 5719 5808 -495 1065 156 19 14 chr4 140160412 140160623 -62167724 + L1MA4A LINE L1 5751 5962 -341 1067 114 63 0 chr4 140160659 140160834 -62167513 - MER30 DNA MER1_type -18 212 27 1945 141 16 35 chr4 140160834 140161211 -62167136 + L1MA4A LINE L1 5929 6298 -5 1224 210 103 28 chr4 140162513 140162832 -62165515 + MER2 DNA MER2_type 3 345 0 565 242 139 16 chr4 140162832 140163024 -62165323 + MER2 DNA MER2_type 130 345 0 207 356 109 5 chr4 140163659 140163861 -62164486 - MIR SINE MIR 0 262 40 1578 208 78 17 chr4 140164188 140164548 -62163799 + L1MA1 LINE L1 1 382 -6827 13091 184 19 16 chr4 140164568 140168492 -62159855 + L1MA1 LINE L1 3434 7364 0 206 239 22 0 chr4 140168499 140168545 -62159802 + GA-rich Low_complexity Low_complexity 2 48 0 630 328 58 32 chr4 140170586 140170897 -62157450 + MLT1I LTR MaLR 91 409 0 2315 118 13 26 chr4 140171840 140172220 -62156127 - THE1C LTR MaLR 0 375 1 794 222 114 0 chr4 140172652 140172819 -62155528 - MSTB LTR MaLR -240 186 1 3168 245 39 39 chr4 140173473 140173843 -62154504 + HERVL68 LTR ERVL 1915 2284 -753 324 48 0 0 chr4 140173843 140173885 -62154462 + (CA)n Simple_repeat Simple_repeat 2 43 0 3168 245 39 39 chr4 140173885 140174444 -62153903 + HERVL68 LTR ERVL 2283 2844 -193 661 125 0 10 chr4 140174449 140174545 -62153802 - THE1A LTR MaLR 0 364 270 1051 169 47 14 chr4 140174746 140174959 -62153388 - THE1A LTR MaLR -135 220 1 1627 241 31 55 chr4 140175225 140175772 -62152575 + MER76 LTR ERV 1 534 -154 5719 117 21 2 chr4 140175814 140177168 -62151179 + L1PA14 LINE L1 4784 6161 0 310 232 61 0 chr4 140177203 140177285 -62151062 + MER76 LTR ERV 560 646 -42 537 221 120 44 chr4 140177293 140177585 -62150762 + L1M4 LINE L1 4629 4948 -1198 301 291 0 12 chr4 140177586 140177672 -62150675 + GA-rich Low_complexity Low_complexity 3 87 0 558 312 64 61 chr4 140177686 140178013 -62150334 - L1MEc LINE L1 -6012 384 57 569 296 91 79 chr4 140178126 140178860 -62149487 - LTR41 LTR ERVL -20 753 11 210 192 0 0 chr4 140179064 140179116 -62149231 + (TA)n Simple_repeat Simple_repeat 2 53 0 243 267 60 17 chr4 140179990 140180106 -62148241 + L1MEd LINE L1 701 821 -5298 270 0 0 0 chr4 140180321 140180351 -62147996 + (CA)n Simple_repeat Simple_repeat 1 30 0 23 33 0 0 chr4 140180351 140180381 -62147966 + AT_rich Low_complexity Low_complexity 1 30 0 241 321 153 32 chr4 140181622 140181812 -62146535 + MLT1I LTR MaLR 74 286 -123 873 51 85 0 chr4 140182126 140182244 -62146103 - LTR12 LTR ERV1 -5 709 582 3538 124 78 49 chr4 140182244 140182913 -62145434 - LTR12 LTR ERV1 0 688 1 407 193 116 67 chr4 140182947 140183274 -62145073 - pTR5 LTR ERV1 -1354 1084 742 304 294 0 0 chr4 140183597 140183682 -62144665 + L1MC4 LINE L1 6619 6703 -1339 404 308 71 23 chr4 140183749 140184015 -62144332 + L1M4 LINE L1 2981 3259 -2887 218 191 44 0 chr4 140184015 140184083 -62144264 + (TA)n Simple_repeat Simple_repeat 2 72 0 25 31 0 0 chr4 140184092 140184124 -62144223 + AT_rich Low_complexity Low_complexity 1 32 0 255 242 0 16 chr4 140184153 140184215 -62144132 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 387 326 58 13 chr4 140184624 140184834 -62143513 + L1M4 LINE L1 3614 3836 -2310 780 169 20 0 chr4 140184834 140184982 -62143365 + L1MA6 LINE L1 6141 6291 -9 387 326 58 13 chr4 140184982 140184995 -62143352 + L1M4 LINE L1 3836 3847 -2299 2291 121 59 0 chr4 140185368 140185724 -62142623 - MER51B LTR ERV1 0 377 1 2032 113 10 0 chr4 140186499 140186792 -62141555 - AluSx SINE Alu -16 296 1 21 57 0 0 chr4 140187364 140187399 -62140948 + AT_rich Low_complexity Low_complexity 1 35 0 562 295 18 6 chr4 140187851 140188017 -62140330 + MLT1J2 LTR MaLR 1 168 -282 424 258 86 25 chr4 140188081 140188244 -62140103 + MLT1J1 LTR MaLR 263 435 -11 272 337 23 0 chr4 140188662 140188748 -62139599 - L2 LINE L2 -251 3062 2975 189 306 0 32 chr4 140189771 140189833 -62138514 - L2 LINE L2 -50 3263 3204 308 362 41 50 chr4 140189978 140190396 -62137951 - L2 LINE L2 -200 3072 2653 2005 136 3 0 chr4 140190703 140190997 -62137350 + AluSg SINE Alu 1 295 -15 225 212 94 59 chr4 140191076 140191161 -62137186 + MIR SINE MIR 101 188 -74 268 329 48 39 chr4 140191305 140191512 -62136835 + L2 LINE L2 2849 3057 -256 181 357 105 14 chr4 140191598 140191741 -62136606 - L2 LINE L2 -855 2459 2304 245 109 22 0 chr4 140192991 140193037 -62135310 + (TG)n Simple_repeat Simple_repeat 2 48 0 884 175 39 0 chr4 140193895 140194049 -62134298 - AluJb SINE Alu -16 296 137 420 192 96 0 chr4 140194234 140194338 -62134009 - L1MD3 LINE L1 -8 7987 7874 889 208 37 9 chr4 140194361 140194577 -62133770 + AluJb SINE Alu 82 303 -9 1011 234 76 62 chr4 140194631 140195063 -62133284 - L1MC4a LINE L1 -297 7511 7074 23 110 0 0 chr4 140196912 140197012 -62131335 + AT_rich Low_complexity Low_complexity 1 100 0 2329 77 0 16 chr4 140197275 140197587 -62130760 - AluY SINE Alu -4 307 1 3075 246 113 34 chr4 140198905 140200143 -62128204 - L1MD3 LINE L1 -940 7055 5720 4137 229 53 34 chr4 140200163 140201210 -62127137 - L1MC2 LINE L1 -25 6319 5293 1459 163 259 14 chr4 140201210 140201554 -62126793 + MSTA LTR MaLR 1 428 0 4137 229 53 34 chr4 140201554 140202532 -62125815 - L1MC2 LINE L1 -1051 5293 4252 28 0 0 0 chr4 140202856 140202884 -62125463 + AT_rich Low_complexity Low_complexity 1 28 0 2093 106 3 17 chr4 140202941 140203233 -62125114 - AluSg SINE Alu -20 290 3 41477 40 24 2 chr4 140204018 140210031 -62118316 - L1PA3 LINE L1 -4 6151 7 263 250 33 0 chr4 140210034 140210094 -62118253 + MER5A DNA MER1_type 44 105 -84 203 329 35 12 chr4 140211031 140211116 -62117231 - MIR SINE MIR -77 185 99 323 325 18 0 chr4 140211188 140211302 -62117045 + MER5B DNA MER1_type 1 116 -62 24 0 0 0 chr4 140211959 140211983 -62116364 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr4 140213043 140213084 -62115263 + AT_rich Low_complexity Low_complexity 1 41 0 204 40 0 0 chr4 140213263 140213288 -62115059 + (TAAAAA)n Simple_repeat Simple_repeat 4 28 0 2274 97 0 0 chr4 140213291 140213599 -62114748 + AluY SINE Alu 1 308 -3 24 0 0 0 chr4 140213679 140213703 -62114644 + AT_rich Low_complexity Low_complexity 1 24 0 720 176 42 7 chr4 140213726 140213868 -62114479 + MER57A LTR ERV1 1 147 -256 1157 196 9 9 chr4 140214259 140214488 -62113859 + MER57A LTR ERV1 175 403 0 713 181 175 17 chr4 140215043 140215220 -62113127 + LTR48 LTR ERV1 2 206 -581 2173 212 78 11 chr4 140215390 140215928 -62112419 + LTR48 LTR ERV1 212 785 -2 337 314 164 34 chr4 140218087 140218380 -62109967 - L1MD3 LINE L1 -2131 5677 5347 804 275 112 20 chr4 140219185 140219628 -62108719 - MLT1F1 LTR MaLR 0 567 1 613 363 47 9 chr4 140219637 140219981 -62108366 + MLT1H LTR MaLR 60 416 -133 26 0 0 0 chr4 140220109 140220135 -62108212 + AT_rich Low_complexity Low_complexity 1 26 0 345 281 77 52 chr4 140220224 140220423 -62107924 + LTR50 LTR ERVL 18 194 -329 882 364 39 6 chr4 140220544 140221027 -62107320 + ERVL LTR ERVL 2001 2499 -3265 884 354 52 25 chr4 140221200 140221793 -62106554 + ERVL LTR ERVL 2747 3355 -2409 831 332 36 36 chr4 140221857 140222381 -62105966 + ERVL LTR ERVL 4886 5409 -355 354 118 26 13 chr4 140222384 140222460 -62105887 + (TCTA)n Simple_repeat Simple_repeat 1 77 0 258 291 48 19 chr4 140222926 140223029 -62105318 + LTR50 LTR ERVL 535 640 -155 26 0 0 0 chr4 140223072 140223098 -62105249 + AT_rich Low_complexity Low_complexity 1 26 0 302 280 184 60 chr4 140223265 140223547 -62104800 + MLT1J LTR MaLR 153 469 -42 1613 146 0 4 chr4 140223666 140223906 -62104441 - AluSx SINE Alu -73 239 1 1648 146 0 21 chr4 140223906 140224187 -62104160 + Tigger3(Golem) DNA MER2_type 2755 3029 0 1448 134 40 40 chr4 140224361 140224638 -62103709 - THE1C LTR MaLR 0 375 99 2191 121 7 0 chr4 140225862 140226168 -62102179 - AluSg1 SINE Alu -1 308 1 23 68 0 0 chr4 140226692 140226736 -62101611 + AT_rich Low_complexity Low_complexity 1 44 0 30 45 0 0 chr4 140226946 140226990 -62101357 + AT_rich Low_complexity Low_complexity 1 44 0 315 373 35 0 chr4 140229104 140229273 -62099074 + MIR SINE MIR 36 210 -52 325 296 17 52 chr4 140229329 140229444 -62098903 + L2 LINE L2 3157 3267 -5 462 258 50 38 chr4 140229597 140229948 -62098399 - MER61D LTR ERV1 -28 750 351 283 190 76 0 chr4 140230153 140230232 -62098115 - MER61E LTR ERV1 -484 85 1 23 33 0 0 chr4 140230522 140230552 -62097795 + AT_rich Low_complexity Low_complexity 1 30 0 243 394 35 7 chr4 140230886 140231028 -62097319 + MIR SINE MIR 67 212 -50 22 0 0 0 chr4 140231133 140231155 -62097192 + AT_rich Low_complexity Low_complexity 1 22 0 181 370 62 0 chr4 140231851 140231932 -62096415 + MIR SINE MIR 56 141 -121 27 29 0 0 chr4 140232112 140232146 -62096201 + AT_rich Low_complexity Low_complexity 1 34 0 237 297 0 0 chr4 140232231 140232295 -62096052 - MLT1I LTR MaLR -28 381 318 304 274 57 75 chr4 140233216 140233428 -62094919 + L1MEc LINE L1 959 1166 -5230 21 0 0 0 chr4 140233998 140234019 -62094328 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 140234879 140234902 -62093445 + AT_rich Low_complexity Low_complexity 1 23 0 290 301 23 30 chr4 140236065 140236198 -62092149 - HERV16 LTR ERVL -2166 2830 2699 1591 159 48 39 chr4 140236639 140236948 -62091399 - THE1B LTR MaLR -52 312 1 3510 188 16 6 chr4 140236948 140237973 -62090374 - L1M2 LINE L1 -640 5651 4614 2120 211 56 35 chr4 140238755 140239384 -62088963 - L1MA8 LINE L1 -3 6288 5647 1857 181 30 30 chr4 140239384 140239748 -62088599 - THE1B LTR MaLR 0 364 1 10657 117 14 1 chr4 140239748 140241308 -62087039 - THE1B-int LTR MaLR 0 1580 2 249 305 124 9 chr4 140241895 140242000 -62086347 + L2 LINE L2 2959 3075 -238 339 25 0 0 chr4 140242180 140242220 -62086127 + (TG)n Simple_repeat Simple_repeat 2 41 0 244 329 63 51 chr4 140242585 140242743 -62085604 - MER5B DNA MER1_type -3 175 16 27 49 0 0 chr4 140243347 140243388 -62084959 + AT_rich Low_complexity Low_complexity 1 41 0 312 319 62 12 chr4 140245738 140245898 -62082449 - L1M4 LINE L1 -757 5389 5222 543 231 118 39 chr4 140245954 140246157 -62082190 + MER20 DNA MER1_type 1 219 0 26 0 0 0 chr4 140247304 140247330 -62081017 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr4 140247774 140247801 -62080546 + AT_rich Low_complexity Low_complexity 1 27 0 283 276 190 0 chr4 140247807 140247923 -62080424 - MIR SINE MIR -4 258 121 327 374 46 0 chr4 140248058 140248232 -62080115 - MIR SINE MIR -34 228 47 198 118 0 0 chr4 140248565 140248599 -62079748 + (CA)n Simple_repeat Simple_repeat 2 35 0 318 78 31 16 chr4 140248746 140248810 -62079537 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 260 219 61 37 chr4 140248810 140248892 -62079455 + L1MC4 LINE L1 6620 6703 -1339 1960 100 0 0 chr4 140251011 140251271 -62077076 + AluSg SINE Alu 33 292 -18 689 330 122 25 chr4 140252078 140252517 -62075830 + L2 LINE L2 1609 2116 -1198 2262 100 3 0 chr4 140252517 140252816 -62075531 - AluSx SINE Alu -12 300 1 689 330 122 25 chr4 140252816 140252940 -62075407 + L2 LINE L2 2116 2227 -1087 3162 265 42 24 chr4 140252987 140254021 -62074326 - L1MCb LINE L1 -4981 1064 13 496 321 126 19 chr4 140254059 140254377 -62073970 + L2 LINE L2 2296 2647 -667 3392 176 36 41 chr4 140254377 140255150 -62073197 + LTR1 LTR ERV1 1 769 -16 441 333 159 30 chr4 140255276 140255463 -62072884 + L2 LINE L2 2865 3027 -286 1792 143 0 7 chr4 140255463 140255749 -62072598 + AluSx SINE Alu 27 310 -2 441 333 159 30 chr4 140255749 140255957 -62072390 + L2 LINE L2 3027 3311 -2 26 30 0 0 chr4 140256057 140256090 -62072257 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr4 140256566 140256594 -62071753 + AT_rich Low_complexity Low_complexity 1 28 0 239 295 21 0 chr4 140257398 140257493 -62070854 + L1MCa LINE L1 1404 1500 -4926 4914 169 36 33 chr4 140257727 140258795 -62069552 + MER11C LTR ERVK 1 1071 0 23 68 0 0 chr4 140258804 140258848 -62069499 + AT_rich Low_complexity Low_complexity 1 44 0 1926 166 13 26 chr4 140258998 140259378 -62068969 + THE1C LTR MaLR 1 375 0 3851 113 6 82 chr4 140259382 140259863 -62068484 + THE1C-int LTR MaLR 6 417 -1163 1863 161 7 0 chr4 140259863 140260167 -62068180 + AluSx SINE Alu 1 306 -6 3851 113 6 82 chr4 140260167 140260393 -62067954 + THE1C-int LTR MaLR 417 659 -921 570 139 5 2 chr4 140260393 140260506 -62067841 + MSTA LTR MaLR 261 427 -1 2199 130 3 0 chr4 140260633 140260941 -62067406 + AluSp SINE Alu 1 309 -4 23 33 0 0 chr4 140262418 140262448 -62065899 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 140263484 140263506 -62064841 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 65 chr4 140263587 140263633 -62064714 + AT_rich Low_complexity Low_complexity 1 43 0 340 283 102 28 chr4 140263985 140264162 -62064185 - L1MC3 LINE L1 -1903 5882 5693 4236 242 121 42 chr4 140264174 140265891 -62062456 + L1ME2 LINE L1 27 1878 -4662 1428 201 71 11 chr4 140265893 140266271 -62062076 + L1ME2 LINE L1 1982 2382 -4158 774 212 115 79 chr4 140266271 140266522 -62061825 + MER2 DNA MER2_type 3 270 -74 2028 146 0 0 chr4 140266522 140266830 -62061517 - AluSx SINE Alu -4 308 1 774 212 115 79 chr4 140266830 140266908 -62061439 + MER2 DNA MER2_type 270 344 0 4518 248 81 53 chr4 140266940 140268255 -62060092 + L1ME2 LINE L1 2700 4114 -2426 647 226 0 0 chr4 140268255 140268370 -62059977 + FLAM_C SINE Alu 1 115 -18 4518 248 81 53 chr4 140268370 140269460 -62058887 + L1ME2 LINE L1 4114 5172 -1368 703 284 10 15 chr4 140269472 140269673 -62058674 - LTR53 LTR ERVL 0 519 320 251 264 14 0 chr4 140269670 140269742 -62058605 - LTR53 LTR ERVL -446 73 1 * 846 298 14 39 chr4 140269742 140269917 -62058430 + L1ME2 LINE L1 5180 5358 -1182 2370 119 0 51 chr4 140269917 140270312 -62058035 + THE1C LTR MaLR 1 375 0 846 298 14 39 chr4 140270312 140270575 -62057772 + L1ME2 LINE L1 5358 5607 -933 1074 181 5 0 chr4 140270780 140271068 -62057279 + AluJo SINE Alu 38 302 -10 24 77 0 0 chr4 140272015 140272067 -62056280 + AT_rich Low_complexity Low_complexity 1 52 0 76 31 0 0 chr4 140272720 140272817 -62055530 + AT_rich Low_complexity Low_complexity 1 97 0 846 201 57 16 chr4 140272817 140273011 -62055336 - AluJo SINE Alu -23 289 88 984 286 34 27 chr4 140273011 140273423 -62054924 + L1ME2 LINE L1 6087 6501 -57 1678 160 6 29 chr4 140273543 140273856 -62054491 + AluJo SINE Alu 1 306 -6 2417 195 47 79 chr4 140274262 140274500 -62053847 + MER67B LTR ERV1 1 245 -416 2062 121 7 0 chr4 140274500 140274798 -62053549 - AluSq SINE Alu -13 300 1 2417 195 47 79 chr4 140274798 140274972 -62053375 + MER67B LTR ERV1 245 423 -238 1861 162 0 3 chr4 140274972 140275268 -62053079 + AluSx SINE Alu 1 295 -17 2417 195 47 79 chr4 140275268 140275535 -62052812 + MER67B LTR ERV1 423 659 -2 23 33 0 0 chr4 140276037 140276067 -62052280 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 140277298 140277326 -62051021 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 140277882 140277904 -62050443 + AT_rich Low_complexity Low_complexity 1 22 0 1526 204 39 7 chr4 140279247 140279527 -62048820 + AluJo SINE Alu 1 289 -23 222 189 38 0 chr4 140279578 140279631 -62048716 + (TAGA)n Simple_repeat Simple_repeat 1 55 0 312 332 120 42 chr4 140280603 140280937 -62047410 - HAL1 LINE L1 -995 1512 1153 2250 97 0 6 chr4 140281502 140281813 -62046534 + AluY SINE Alu 1 309 -2 948 255 38 73 chr4 140283152 140283567 -62044780 - L1ME1 LINE L1 0 6334 5797 372 231 22 52 chr4 140283559 140283693 -62044654 - L1MEc LINE L1 -5450 946 817 * 392 312 91 78 chr4 140283689 140284291 -62044056 + L1MEc LINE L1 205 814 -5582 1605 206 3 16 chr4 140284510 140284826 -62043521 + AluJo SINE Alu 1 312 0 206 176 29 29 chr4 140285826 140285894 -62042453 + (TTAA)n Simple_repeat Simple_repeat 3 70 0 803 264 51 23 chr4 140286148 140286501 -62041846 + L1ME LINE L1 5225 5588 -576 519 354 56 37 chr4 140286536 140286912 -62041435 - L1MEc LINE L1 -4943 1453 1071 2297 168 76 17 chr4 140286914 140287385 -62040962 - L1 LINE L1 -2000 4146 3648 256 186 0 0 chr4 140287392 140287435 -62040912 + MLT1B LTR MaLR 345 387 -3 32 26 0 0 chr4 140287547 140287586 -62040761 + AT_rich Low_complexity Low_complexity 1 39 0 2093 290 54 20 chr4 140287608 140288421 -62039926 - L1M4 LINE L1 -1888 4258 3397 1914 121 6 56 chr4 140288421 140288744 -62039603 - AluY SINE Alu -4 307 1 2093 290 54 20 chr4 140288744 140289031 -62039316 - L1M4 LINE L1 -2749 3397 3121 21 0 0 0 chr4 140291536 140291557 -62036790 + AT_rich Low_complexity Low_complexity 1 21 0 239 346 98 33 chr4 140291557 140291771 -62036576 + MIR SINE MIR 4 231 -31 21 0 0 0 chr4 140291885 140291906 -62036441 + AT_rich Low_complexity Low_complexity 1 21 0 1849 160 79 39 chr4 140292693 140293074 -62035273 - MER61B LTR ERV1 -29 396 1 3324 143 20 74 chr4 140293090 140293820 -62034527 + LTR8 LTR ERV1 1 691 0 2105 113 10 3 chr4 140293950 140294269 -62034078 + AluSx SINE Alu 2 312 0 1525 193 93 33 chr4 140294531 140294930 -62033417 - LTR49 LTR ERV1 0 595 173 1286 193 14 0 chr4 140294938 140295161 -62033186 - LTR38-int LTR ERV1 -1047 7073 6848 945 163 47 81 chr4 140295304 140295751 -62032596 - LTR38-int LTR ERV1 -2451 4225 2349 272 132 162 0 chr4 140295756 140295824 -62032523 - LTR38-int LTR ERV1 -6290 1830 1752 624 158 38 63 chr4 140295870 140295885 -62032462 - LTR38-int LTR ERV1 -5009 1749 1598 770 163 14 14 chr4 140295885 140296026 -62032321 - LTR57-int LTR ERVL -3962 1381 1241 1309 282 59 11 chr4 140296090 140296598 -62031749 - LTR38-int LTR ERV1 -1162 624 43 837 274 37 46 chr4 140296672 140297022 -62031325 - LTR38 LTR ERV1 -61 495 149 1908 127 6 46 chr4 140297337 140297660 -62030687 + AluSx SINE Alu 3 312 0 467 331 36 15 chr4 140297663 140297992 -62030355 + L1M4 LINE L1 3485 3820 -2326 1363 210 28 34 chr4 140298018 140298342 -62030005 + MER90 LTR ERV1 3 324 -290 219 328 0 0 chr4 140300182 140300240 -62028107 + MER5A DNA MER1_type 131 188 -1 1072 205 86 13 chr4 140300891 140301327 -62027020 - MLT1D LTR MaLR 0 505 1 2434 76 0 0 chr4 140304105 140304409 -62023938 + AluY SINE Alu 1 304 -7 207 0 0 0 chr4 140305210 140305233 -62023114 + (TG)n Simple_repeat Simple_repeat 2 24 0 200 200 0 0 chr4 140306153 140306203 -62022144 + A-rich Low_complexity Low_complexity 1 50 0 1569 195 0 10 chr4 140308421 140308745 -62019602 + AluJo SINE Alu 1 312 0 1375 145 4 13 chr4 140308800 140309052 -62019295 - AluSx SINE Alu 0 309 60 3586 66 45 0 chr4 140309165 140309634 -62018713 + LTR2B LTR ERV1 1 490 0 423 351 13 13 chr4 140309671 140309825 -62018522 - MIR3 SINE MIR -9 199 46 189 0 0 0 chr4 140310043 140310064 -62018283 + (CA)n Simple_repeat Simple_repeat 2 22 0 1678 176 74 46 chr4 140310164 140310635 -62017712 + LTR10A LTR ERV1 1 548 -61 26 30 0 0 chr4 140311409 140311442 -62016905 + AT_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chr4 140311503 140311540 -62016807 + AT_rich Low_complexity Low_complexity 1 37 0 2478 146 60 10 chr4 140311923 140312048 -62016299 - L1MA8 LINE L1 -5 6286 6169 207 0 0 0 chr4 140312048 140312071 -62016276 + (TG)n Simple_repeat Simple_repeat 1 23 0 2478 146 60 10 chr4 140312071 140312425 -62015922 - L1MA8 LINE L1 -122 6169 5783 1921 154 0 10 chr4 140313242 140313604 -62014743 - AluSx SINE Alu 0 361 3 213 39 0 0 chr4 140314009 140314035 -62014312 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 492 283 89 56 chr4 140314042 140315452 -62012895 - L1ME3A LINE L1 -236 5928 4490 297 0 0 0 chr4 140315456 140315489 -62012858 + (CA)n Simple_repeat Simple_repeat 1 33 0 2008 116 0 0 chr4 140315530 140315806 -62012541 + AluSq SINE Alu 23 298 -15 1554 40 0 35 chr4 140315884 140316082 -62012265 + AluY SINE Alu 107 297 -14 447 290 114 72 chr4 140316088 140316447 -62011900 - L1ME3A LINE L1 -2107 4039 3666 386 279 79 0 chr4 140316644 140316784 -62011563 + L1M4 LINE L1 3065 3215 -2931 23 0 0 0 chr4 140316838 140316861 -62011486 + AT_rich Low_complexity Low_complexity 1 23 0 3956 89 2 0 chr4 140317454 140317993 -62010354 + L1PA13 LINE L1 5621 6160 -3 21 114 0 0 chr4 140318007 140318112 -62010235 + AT_rich Low_complexity Low_complexity 1 105 0 22 0 0 0 chr4 140318442 140318464 -62009883 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 140318601 140318623 -62009724 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 140319020 140319050 -62009297 + AT_rich Low_complexity Low_complexity 1 30 0 1790 143 0 7 chr4 140319193 140319465 -62008882 + AluSg SINE Alu 31 300 -10 187 273 18 0 chr4 140319660 140319715 -62008632 - MER5B DNA MER1_type -82 96 41 22 35 0 0 chr4 140319876 140319905 -62008442 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr4 140320123 140320156 -62008191 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr4 140320443 140320472 -62007875 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 140321329 140321350 -62006997 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 140322025 140322047 -62006300 + AT_rich Low_complexity Low_complexity 1 22 0 695 268 12 12 chr4 140322399 140322567 -62005780 + MER45A DNA AcHobo 9 176 -2 1330 204 53 3 chr4 140322671 140322955 -62005392 - AluJb SINE Alu -12 300 3 714 189 8 0 chr4 140323531 140323658 -62004689 + L1MD3 LINE L1 7138 7265 -730 438 228 0 63 chr4 140323670 140323797 -62004550 + MLT1F1 LTR MaLR 2 120 -447 643 175 42 0 chr4 140323799 140323919 -62004428 + L1MD3 LINE L1 7411 7535 -460 294 231 31 163 chr4 140324142 140324302 -62004045 - L1ME3A LINE L1 -5 6165 6027 3256 96 2 8 chr4 140324801 140325271 -62003076 - L1PA10 LINE L1 0 6168 5702 455 258 15 0 chr4 140325472 140325604 -62002743 - L1MB7 LINE L1 -50 6134 6001 392 167 0 0 chr4 140325619 140325685 -62002662 - L1M4c LINE L1 -3970 2414 2349 1349 283 107 42 chr4 140325800 140326352 -62001995 - MLT1E LTR MaLR -5 588 1 25 51 0 0 chr4 140326636 140326675 -62001672 + AT_rich Low_complexity Low_complexity 1 39 0 3182 50 5 0 chr4 140326722 140327126 -62001221 - L1P LINE L1 -1370 4776 4371 189 0 0 0 chr4 140327723 140327744 -62000603 + (A)n Simple_repeat Simple_repeat 1 21 0 633 315 36 64 chr4 140328382 140328772 -61999575 + HERVL40-B1 LTR ERVL 2562 2940 -2590 365 267 55 68 chr4 140328807 140328953 -61999394 + HERVL40-B1 LTR ERVL 2934 3077 -2453 382 301 56 28 chr4 140329249 140329392 -61998955 + HERVL40-B1 LTR ERVL 3736 3882 -1648 * 555 250 68 93 chr4 140329373 140329726 -61998621 + HERVL40-B1 LTR ERVL 1767 4290 -1026 260 317 77 10 chr4 140329987 140330091 -61998256 + HERVL40-B1 LTR ERVL 2218 2328 -709 405 238 71 134 chr4 140330226 140330495 -61997852 + HERVL40-B1 LTR ERVL 2456 2707 -330 1873 168 0 3 chr4 140330751 140331054 -61997293 + AluSx SINE Alu 1 302 -10 388 303 85 6 chr4 140331071 140331236 -61997111 + MER89-int LTR ERV1 6315 6492 -309 * 691 283 94 17 chr4 140331212 140331445 -61996902 + HERVL40-B1 LTR ERVL 5277 5527 -3 1669 164 25 0 chr4 140333235 140333510 -61994837 + AluSg SINE Alu 9 290 -20 227 125 0 0 chr4 140334217 140334249 -61994098 + MER66A LTR ERV1 306 337 -141 336 363 79 21 chr4 140335875 140336203 -61992144 + L1 LINE L1 2648 2994 -3152 28 29 0 0 chr4 140336599 140336634 -61991713 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr4 140337307 140337351 -61990996 + AT_rich Low_complexity Low_complexity 1 44 0 32 0 0 0 chr4 140337677 140337709 -61990638 + AT_rich Low_complexity Low_complexity 1 32 0 379 316 115 11 chr4 140337820 140337994 -61990353 - MIR SINE MIR 0 262 71 1081 235 112 30 chr4 140338017 140338383 -61989964 + MER57B LTR ERV1 39 434 0 7244 49 1 0 chr4 140338417 140340113 -61988234 - L1PA5 LINE L1 -2 6152 4457 267 261 15 0 chr4 140340724 140340789 -61987558 + MLT1L LTR MaLR 419 484 -131 915 202 100 12 chr4 140341232 140341661 -61986686 - MLT1D LTR MaLR -1 504 10 1047 248 14 67 chr4 140342677 140343025 -61985322 + MLT2B1 LTR ERVL 3 434 -86 1337 213 55 60 chr4 140343489 140343874 -61984473 + MLT1B LTR MaLR 6 388 -2 7377 198 5 4 chr4 140344142 140345711 -61982636 - HERVL18 LTR ERVL -4399 1648 9 2279 117 16 46 chr4 140345725 140346093 -61982254 - LTR18A LTR ERVL 0 357 1 247 346 25 0 chr4 140346482 140346563 -61981784 - MIR SINE MIR -62 146 64 21 0 0 0 chr4 140346899 140346920 -61981427 + AT_rich Low_complexity Low_complexity 1 21 0 1656 192 51 9 chr4 140347002 140347336 -61981011 + MLT1B LTR MaLR 1 348 -42 298 284 0 0 chr4 140347512 140347586 -61980761 + MER5A DNA MER1_type 36 109 -80 22 0 0 0 chr4 140349580 140349602 -61978745 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 140349734 140349755 -61978592 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 140351097 140351125 -61977222 + AT_rich Low_complexity Low_complexity 1 28 0 998 76 0 28 chr4 140351214 140351390 -61976957 - L1PA7 LINE L1 0 6154 6013 1470 220 7 0 chr4 140351447 140351738 -61976609 + AluJo SINE Alu 18 310 -2 252 233 33 0 chr4 140352079 140352139 -61976208 - L1MC4a LINE L1 -1379 6429 6368 333 0 0 0 chr4 140352188 140352225 -61976122 + (TA)n Simple_repeat Simple_repeat 2 38 0 1810 166 3 13 chr4 140352238 140352552 -61975795 - AluSx SINE Alu 0 312 2 278 233 41 0 chr4 140352596 140352669 -61975678 - L1MC4a LINE L1 -1492 6316 6241 237 167 0 0 chr4 140352757 140352811 -61975536 + (TG)n Simple_repeat Simple_repeat 2 55 0 2504 265 114 35 chr4 140352818 140354397 -61973950 - L1MEc LINE L1 -2442 3773 2057 2108 114 10 3 chr4 140354397 140354696 -61973651 - AluSx SINE Alu -11 301 1 2504 265 114 35 chr4 140354696 140354869 -61973478 - L1MEc LINE L1 -4158 2057 1899 417 261 43 25 chr4 140354919 140355080 -61973267 - L1MEc LINE L1 -4601 1795 1632 2141 64 14 25 chr4 140355082 140355363 -61972984 - AluY SINE Alu -11 300 23 1022 218 42 18 chr4 140355376 140355660 -61972687 - L1MB8 LINE L1 -1 6177 5887 665 281 80 0 chr4 140355714 140355913 -61972434 - MLT1E LTR MaLR -32 561 347 647 258 105 20 chr4 140355992 140356240 -61972107 - MLT1E LTR MaLR -385 269 1 567 218 0 0 chr4 140356471 140356604 -61971743 + MER63 DNA MER1_type 65 197 -864 1424 236 96 30 chr4 140356618 140357127 -61971220 + MER63 DNA MER1_type 428 970 -90 417 198 0 0 chr4 140357264 140357355 -61970992 + CT-rich Low_complexity Low_complexity 3 93 0 986 105 0 22 chr4 140357355 140357536 -61970811 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 883 155 0 17 chr4 140357561 140357742 -61970605 + CT-rich Low_complexity Low_complexity 3 180 0 203 88 29 0 chr4 140360483 140360517 -61967830 + (TATATG)n Simple_repeat Simple_repeat 4 38 0 22 106 0 0 chr4 140360584 140360669 -61967678 + AT_rich Low_complexity Low_complexity 1 85 0 300 287 11 32 chr4 140360690 140360784 -61967563 + L1MC4 LINE L1 6611 6702 -1340 240 130 0 0 chr4 140360939 140360985 -61967362 + (GA)n Simple_repeat Simple_repeat 2 47 0 201 200 0 20 chr4 140361192 140361242 -61967105 + A-rich Low_complexity Low_complexity 5 53 0 1032 291 36 25 chr4 140361335 140361779 -61966568 + L1ME2 LINE L1 5659 6107 -57 1666 156 6 32 chr4 140361899 140362213 -61966134 + AluJo SINE Alu 1 306 -6 895 284 68 21 chr4 140362876 140363094 -61965253 - L1M4c LINE L1 -2495 4149 3943 2140 90 6 56 chr4 140363094 140363416 -61964931 - AluY SINE Alu -5 306 1 895 284 68 21 chr4 140363416 140363919 -61964428 - L1M4c LINE L1 -2701 3943 3394 192 40 0 0 chr4 140363986 140364011 -61964336 + (CA)n Simple_repeat Simple_repeat 2 26 0 1225 285 94 44 chr4 140364023 140366187 -61962160 - L1M4c LINE L1 -3222 3422 1021 189 0 0 0 chr4 140366948 140366969 -61961378 + (GA)n Simple_repeat Simple_repeat 2 22 0 1093 230 151 30 chr4 140367438 140367870 -61960477 + MER66A LTR ERV1 100 478 0 1528 201 0 52 chr4 140368299 140368607 -61959740 + AluJb SINE Alu 1 292 -20 459 186 10 20 chr4 140369371 140369473 -61958874 - AluJb SINE Alu -32 280 180 183 325 80 37 chr4 140369610 140369773 -61958574 + L2 LINE L2 1895 2064 -1250 1060 344 35 4 chr4 140369838 140370294 -61958053 + MER69 DNA AcHobo 1 470 -756 513 239 104 46 chr4 140370288 140370615 -61957732 + MER69 DNA AcHobo 2036 2381 -145 * 889 198 17 46 chr4 140370615 140370853 -61957494 - L1MA10 LINE L1 -19 6315 6085 265 160 120 0 chr4 140370957 140371032 -61957315 - MER58 DNA MER1_type -149 192 109 3551 180 17 9 chr4 140371032 140371726 -61956621 - L1MA4A LINE L1 -17 6286 5587 3486 184 17 8 chr4 140371726 140371742 -61956605 - L1MA4A LINE L1 -15 6288 5571 498 165 12 0 chr4 140371837 140371922 -61956425 - L1MA4A LINE L1 -1903 4243 4158 * 954 203 47 0 chr4 140371913 140372105 -61956242 + L1 LINE L1 3805 4005 -2141 230 380 12 12 chr4 140372263 140372429 -61955918 + L2 LINE L2 2183 2348 -966 22 56 0 0 chr4 140372752 140372788 -61955559 + AT_rich Low_complexity Low_complexity 1 36 0 243 225 0 28 chr4 140373195 140373266 -61955081 - MLT1C LTR MaLR 0 467 399 353 92 31 0 chr4 140373266 140373331 -61955016 + L1MB3 LINE L1 6115 6181 -2 21 0 0 0 chr4 140373476 140373497 -61954850 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr4 140373589 140373624 -61954723 + AT_rich Low_complexity Low_complexity 1 35 0 6377 85 10 35 chr4 140373847 140375007 -61953340 - L1PA10 LINE L1 -2 6166 5010 4681 141 5 18 chr4 140375007 140375229 -61953118 + L1P LINE L1 3283 3506 -2640 3100 106 13 9 chr4 140375229 140375680 -61952667 + MLT2A2 LTR ERVL 1 453 0 4681 141 5 18 chr4 140375680 140376253 -61952094 + L1P LINE L1 3506 4068 -2078 21 36 0 0 chr4 140378261 140378289 -61950058 + AT_rich Low_complexity Low_complexity 1 28 0 2653 241 29 6 chr4 140378320 140379039 -61949308 - L1 LINE L1 -1331 4815 4080 1209 93 0 0 chr4 140379040 140379201 -61949146 - AluY SINE Alu -5 306 146 909 252 7 19 chr4 140379201 140379471 -61948876 - L1 LINE L1 -2057 4089 3823 1665 189 80 6 chr4 140379494 140379843 -61948504 + THE1C LTR MaLR 1 375 0 8183 149 70 45 chr4 140379843 140381066 -61947281 + THE1C-int LTR MaLR 1 1272 -308 2071 136 0 0 chr4 140381066 140381368 -61946979 - AluSx SINE Alu -10 302 1 8183 149 70 45 chr4 140381368 140381685 -61946662 + THE1C-int LTR MaLR 1272 1580 0 1982 149 56 0 chr4 140381685 140382040 -61946307 + THE1C LTR MaLR 1 375 0 597 227 43 0 chr4 140382044 140382185 -61946162 - L1 LINE L1 -2355 3791 3645 665 178 8 8 chr4 140382193 140382311 -61946036 - MLT1A1 LTR MaLR -247 118 1 478 252 31 24 chr4 140382378 140382505 -61945842 + L1M1 LINE L1 15 142 -7423 2347 219 26 56 chr4 140382517 140383120 -61945227 + L1M1 LINE L1 71 655 -6910 * 5853 228 18 8 chr4 140383097 140384277 -61944070 + L1M1 LINE L1 220 1411 -6154 1051 164 10 2 chr4 140384388 140385412 -61942935 - ALR/Alpha Satellite centromeric 0 1031 1 8557 70 0 0 chr4 140385515 140386714 -61941633 + L1P LINE L1 715 2041 -4105 1010 176 4 0 chr4 140386819 140388176 -61940171 - ALR/Alpha Satellite centromeric 0 1361 1 3262 158 6 0 chr4 140388277 140389317 -61939030 + L1MA2 LINE L1 1418 2511 -5054 * 14224 180 28 11 chr4 140389315 140392015 -61936332 + L1MA2 LINE L1 2899 5550 -2173 405 0 0 0 chr4 140392015 140392060 -61936287 + (CA)n Simple_repeat Simple_repeat 2 46 0 14224 180 28 11 chr4 140392060 140392292 -61936055 + L1MA2 LINE L1 5550 5776 -1947 204 40 0 0 chr4 140392292 140392317 -61936030 + (CA)n Simple_repeat Simple_repeat 2 26 0 14224 180 28 11 chr4 140392317 140394118 -61934229 + L1MA2 LINE L1 5776 7722 -1 3805 215 13 20 chr4 140394139 140395202 -61933145 + L1M3 LINE L1 4397 5451 -717 925 205 93 0 chr4 140395209 140395424 -61932923 - MER54A LTR ERVL -6 895 661 817 291 75 25 chr4 140396341 140396778 -61931569 - L1MCc LINE L1 -5941 482 24 515 256 8 0 chr4 140396981 140397106 -61931241 - L1M3d LINE L1 -5379 512 387 24 0 0 0 chr4 140397149 140397173 -61931174 + AT_rich Low_complexity Low_complexity 1 24 0 230 89 101 13 chr4 140397229 140397308 -61931039 + (TA)n Simple_repeat Simple_repeat 2 87 0 229 202 83 0 chr4 140397321 140397405 -61930942 + L1MB1 LINE L1 6077 6167 -1 545 325 58 30 chr4 140397780 140398420 -61929927 + L1ME3A LINE L1 4620 5277 -869 407 317 33 21 chr4 140398479 140398722 -61929625 + L1ME3A LINE L1 5351 5596 -574 515 367 30 32 chr4 140398810 140399181 -61929166 - LTR16A LTR ERVL -2 448 79 895 287 110 21 chr4 140399246 140399681 -61928666 + L1ME3A LINE L1 5646 6119 -51 33 43 0 0 chr4 140399860 140399907 -61928440 + AT_rich Low_complexity Low_complexity 1 47 0 210 266 38 0 chr4 140400072 140400165 -61928182 + (TATATG)n Simple_repeat Simple_repeat 1 96 0 24 0 0 0 chr4 140400831 140400855 -61927492 + AT_rich Low_complexity Low_complexity 1 24 0 217 243 14 0 chr4 140401312 140401386 -61926961 + (TA)n Simple_repeat Simple_repeat 1 75 0 1833 167 6 22 chr4 140402606 140402923 -61925424 - AluSx SINE Alu 0 312 1 25 0 0 0 chr4 140403050 140403075 -61925272 + AT_rich Low_complexity Low_complexity 1 25 0 418 274 44 113 chr4 140403132 140403494 -61924853 + MER34 LTR ERV1 12 348 -194 305 295 62 23 chr4 140403648 140403777 -61924570 + MER34 LTR ERV1 378 511 -31 225 0 0 0 chr4 140404059 140404084 -61924263 + (CA)n Simple_repeat Simple_repeat 1 25 0 311 312 32 27 chr4 140404121 140404307 -61924040 + L2 LINE L2 1867 2053 -1261 378 327 30 18 chr4 140404324 140404489 -61923858 + MIR SINE MIR 31 197 -65 2336 207 22 4 chr4 140404680 140405144 -61923203 + MER70A LTR ERVL 1 472 0 252 101 67 34 chr4 140405493 140405582 -61922765 + (TA)n Simple_repeat Simple_repeat 1 92 0 322 136 75 34 chr4 140406377 140406524 -61921823 + (TA)n Simple_repeat Simple_repeat 1 153 0 31 68 0 0 chr4 140407931 140407990 -61920357 + AT_rich Low_complexity Low_complexity 1 59 0 608 233 13 73 chr4 140408023 140408255 -61920092 - L1MD2 LINE L1 -20 6599 6382 * 884 235 77 35 chr4 140408240 140408525 -61919822 - L1MD2 LINE L1 -352 6150 5854 23 33 0 0 chr4 140408539 140408569 -61919778 + AT_rich Low_complexity Low_complexity 1 30 0 335 224 0 0 chr4 140408587 140408672 -61919675 + L1MA2 LINE L1 5987 6071 -233 1259 220 17 31 chr4 140408672 140409022 -61919325 - L1MD2 LINE L1 -635 5867 5523 * 2103 236 44 61 chr4 140408999 140409653 -61918694 - L1MD2 LINE L1 -2869 3537 2900 252 0 0 0 chr4 140409653 140409681 -61918666 + (TG)n Simple_repeat Simple_repeat 1 28 0 2103 236 44 61 chr4 140409681 140409917 -61918430 - L1MD2 LINE L1 -3506 2900 2662 544 252 48 62 chr4 140409917 140410128 -61918219 - MER61D LTR ERV1 -10 784 338 1272 249 106 63 chr4 140410526 140411562 -61916785 - L1MD2 LINE L1 -3762 2644 1571 824 174 0 0 chr4 140411564 140411719 -61916628 + L1MA5 LINE L1 4872 5026 -1120 3633 156 32 57 chr4 140411731 140412522 -61915825 + L1MA5 LINE L1 5530 6300 0 305 403 91 8 chr4 140412544 140412787 -61915560 - L3 LINE CR1 -1197 380 118 1160 218 44 116 chr4 140413027 140413528 -61914819 + MLT1D LTR MaLR 1 465 -40 2178 236 20 29 chr4 140413538 140414280 -61914067 - L1MD2 LINE L1 -4823 1583 845 1951 223 8 70 chr4 140414281 140414784 -61913563 - MER70A LTR ERVL 0 472 1 14027 184 38 11 chr4 140414792 140415222 -61913125 - MER70A-int LTR ERVL -1 5022 4605 1886 134 3 39 chr4 140415222 140415527 -61912820 + AluSp SINE Alu 1 294 -19 14027 184 38 11 chr4 140415527 140417670 -61910677 - MER70A-int LTR ERVL -418 4605 2380 1955 111 26 11 chr4 140417670 140418062 -61910285 + LTR7 LTR ERV1 1 450 0 702 111 0 34 chr4 140418069 140418186 -61910161 + HERVH LTR ERV1 2613 2725 -4988 7079 115 8 6 chr4 140418188 140419678 -61908669 + HERVH LTR ERV1 3582 5286 -1805 2786 102 7 11 chr4 140419697 140420130 -61908217 + HERVH LTR ERV1 7283 7713 0 1880 109 37 17 chr4 140420130 140420521 -61907826 + LTR7 LTR ERV1 1 450 0 460 191 12 0 chr4 140420521 140420605 -61907742 - MER70A-int LTR ERVL -2639 2384 2300 4840 203 83 7 chr4 140420624 140421616 -61906731 - MER70A-int LTR ERVL -3947 1076 10 2274 230 4 17 chr4 140421625 140421857 -61906490 - MER70A LTR ERVL 0 472 239 2233 75 17 10 chr4 140421857 140422151 -61906196 - AluSq SINE Alu -17 296 1 2274 230 4 17 chr4 140422151 140422396 -61905951 - MER70A LTR ERVL -233 239 1 1809 308 149 19 chr4 140422396 140423139 -61905208 - L1MD2 LINE L1 -5561 848 9 23 54 0 0 chr4 140423444 140423481 -61904866 + AT_rich Low_complexity Low_complexity 1 37 0 1281 191 108 22 chr4 140423564 140423841 -61904506 - AluJo SINE Alu -1 301 1 344 91 0 0 chr4 140423968 140424012 -61904335 - Alu SINE Alu -258 44 1 2512 221 35 69 chr4 140426467 140427151 -61901196 + MER76 LTR ERV 1 661 -27 1851 114 21 18 chr4 140427238 140427549 -61900798 + AluSx SINE Alu 1 312 0 474 198 10 31 chr4 140427615 140427711 -61900636 + Tigger3b DNA MER2_type 1 94 -1137 4310 156 71 19 chr4 140427730 140427988 -61900359 + Tigger3b DNA MER2_type 332 575 -2453 7781 26 0 0 chr4 140427988 140429338 -61899009 - L1PA3 LINE L1 -3 6152 4801 4310 156 71 19 chr4 140429338 140429934 -61898413 + Tigger3b DNA MER2_type 575 1231 0 967 255 31 31 chr4 140430413 140430707 -61897640 + MER58B DNA MER1_type 36 329 -12 46 61 0 26 chr4 140431403 140431517 -61896830 + AT_rich Low_complexity Low_complexity 1 111 0 2618 145 2 19 chr4 140431517 140431937 -61896410 + THE1B-int LTR MaLR 460 872 -708 3301 120 6 0 chr4 140432037 140432503 -61895844 + THE1B-int LTR MaLR 1112 1580 0 2147 132 33 36 chr4 140432503 140432868 -61895479 + THE1B LTR MaLR 1 364 0 4393 173 21 34 chr4 140432868 140433806 -61894541 - L1PA13 LINE L1 -4417 2380 1441 1721 239 117 2 chr4 140433808 140434251 -61894096 - LTR22 LTR ERVK 0 509 16 1167 253 44 113 chr4 140434264 140434904 -61893443 + LTR4 LTR ERV1 1 596 0 728 331 88 14 chr4 140434978 140435331 -61893016 - L1PA13 LINE L1 -5532 1255 877 288 268 0 0 chr4 140435348 140435404 -61892943 - L1PA13 LINE L1 -5970 817 762 9843 72 0 22 chr4 140435691 140437146 -61891201 + SST1 Satellite centromeric 141 1563 0 375 89 0 0 chr4 140437162 140437218 -61891129 + (TG)n Simple_repeat Simple_repeat 1 56 0 262 235 0 25 chr4 140437235 140437316 -61891031 + CT-rich Low_complexity Low_complexity 2 80 0 10735 70 10 21 chr4 140438045 140439625 -61888722 + SST1 Satellite centromeric 1 1563 0 498 61 0 0 chr4 140439641 140439707 -61888640 + (TG)n Simple_repeat Simple_repeat 1 66 0 278 222 0 25 chr4 140439724 140439805 -61888542 + CT-rich Low_complexity Low_complexity 2 80 0 10823 75 0 21 chr4 140440531 140442127 -61886220 + SST1 Satellite centromeric 1 1563 0 426 114 0 0 chr4 140442143 140442213 -61886134 + (TG)n Simple_repeat Simple_repeat 1 70 0 263 256 0 13 chr4 140442219 140442297 -61886050 + CT-rich Low_complexity Low_complexity 2 78 0 10820 68 10 21 chr4 140443026 140444606 -61883741 + SST1 Satellite centromeric 1 1563 0 354 80 0 0 chr4 140444622 140444672 -61883675 + (TG)n Simple_repeat Simple_repeat 1 50 0 262 235 0 25 chr4 140444689 140444770 -61883577 + CT-rich Low_complexity Low_complexity 2 80 0 10819 77 0 19 chr4 140445497 140447090 -61881257 + SST1 Satellite centromeric 1 1563 0 462 108 0 0 chr4 140447106 140447180 -61881167 + (TG)n Simple_repeat Simple_repeat 1 74 0 251 234 0 26 chr4 140447186 140447263 -61881084 + CT-rich Low_complexity Low_complexity 2 76 0 10706 70 11 21 chr4 140447991 140449570 -61878777 + SST1 Satellite centromeric 1 1563 0 444 67 0 0 chr4 140449586 140449646 -61878701 + (TG)n Simple_repeat Simple_repeat 1 60 0 185 196 18 0 chr4 140449680 140449736 -61878611 + CT-rich Low_complexity Low_complexity 2 58 0 6531 70 1 13 chr4 140450473 140451395 -61876952 + SST1 Satellite centromeric 1 911 -652 35 83 0 0 chr4 140451621 140451705 -61876642 + AT_rich Low_complexity Low_complexity 1 84 0 1177 258 71 48 chr4 140452434 140453012 -61875335 - L1ME2 LINE L1 -16 6148 5558 1114 274 65 33 chr4 140453164 140453707 -61874640 - L1ME2 LINE L1 -127 6106 5547 1132 270 87 58 chr4 140453761 140454402 -61873945 - L1ME2 LINE L1 -5603 793 134 1386 292 106 24 chr4 140454435 140455674 -61872673 + Charlie2a DNA MER1_type 292 1631 -1231 23 54 0 0 chr4 140456128 140456165 -61872182 + AT_rich Low_complexity Low_complexity 1 37 0 1853 126 0 0 chr4 140456217 140456480 -61871867 + AluSg SINE Alu 35 297 -13 694 338 42 42 chr4 140456861 140457355 -61870992 + L1MEd LINE L1 843 1336 -5036 246 271 52 0 chr4 140457412 140457508 -61870839 + L1MEd LINE L1 1292 1392 -4992 256 232 0 0 chr4 140457552 140457608 -61870739 + GA-rich Low_complexity Low_complexity 1 56 0 2711 287 37 43 chr4 140457830 140459047 -61869300 + L1PA13 LINE L1 1 1224 -5563 189 0 0 0 chr4 140459047 140459068 -61869279 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 2711 287 37 43 chr4 140459068 140459375 -61868972 + L1PA13 LINE L1 1224 1531 -5256 1646 156 26 23 chr4 140459375 140459683 -61868664 + AluSx SINE Alu 2 310 -2 2711 287 37 43 chr4 140459683 140459848 -61868499 + L1PA13 LINE L1 1531 2075 -4712 1978 162 32 19 chr4 140459859 140460229 -61868118 - THE1C LTR MaLR 0 375 1 5284 145 8 6 chr4 140460229 140461023 -61867324 - THE1C-int LTR MaLR 0 1580 786 2143 218 47 0 chr4 140461022 140461517 -61866830 + L1 LINE L1 4540 5057 -1089 * 7317 263 17 11 chr4 140461540 140463811 -61864536 - L1PA12 LINE L1 -2333 5251 2937 1692 110 99 41 chr4 140463811 140464103 -61864244 - AluY SINE Alu -2 309 1 7317 263 17 11 chr4 140464103 140465462 -61862885 - L1PA12 LINE L1 -4647 2937 1587 446 292 41 65 chr4 140465512 140465851 -61862496 - L1PA12 LINE L1 -5509 2072 1539 1946 179 16 28 chr4 140465855 140466219 -61862128 - THE1B LTR MaLR -4 360 1 11489 109 5 2 chr4 140466224 140467794 -61860553 - THE1B-int LTR MaLR -5 1575 1 2022 169 19 25 chr4 140467794 140468160 -61860187 - THE1B LTR MaLR 0 364 1 1707 309 33 63 chr4 140468160 140469410 -61858937 - L1PA12 LINE L1 -5819 1762 8 724 223 51 6 chr4 140469418 140469575 -61858772 - MLT1A2 LTR MaLR -54 320 157 2262 89 0 40 chr4 140469700 140470024 -61858323 + AluY SINE Alu 1 311 0 22 0 0 0 chr4 140470026 140470048 -61858299 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr4 140470132 140470176 -61858171 + AT_rich Low_complexity Low_complexity 1 44 0 24 53 0 0 chr4 140470215 140470253 -61858094 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr4 140470291 140470317 -61858030 + AT_rich Low_complexity Low_complexity 1 26 0 25 51 0 0 chr4 140470334 140470373 -61857974 + AT_rich Low_complexity Low_complexity 1 39 0 32 26 0 0 chr4 140470431 140470470 -61857877 + AT_rich Low_complexity Low_complexity 1 39 0 1242 34 0 0 chr4 140470639 140470785 -61857562 - L1PA6 LINE L1 -4 6150 6005 32 26 0 0 chr4 140470879 140470918 -61857429 + AT_rich Low_complexity Low_complexity 1 39 0 30 0 0 0 chr4 140471184 140471214 -61857133 + AT_rich Low_complexity Low_complexity 1 30 0 777 243 122 9 chr4 140472481 140472695 -61855652 + MER8 DNA MER2_type 2 239 0 369 243 142 14 chr4 140473072 140473220 -61855127 + L1ME4a LINE L1 5715 5881 -240 14163 156 22 6 chr4 140473367 140473692 -61854655 - Tigger1 DNA MER2_type -1 2417 2099 2014 135 10 0 chr4 140473692 140473995 -61854352 - AluSx SINE Alu 0 312 7 14163 156 22 6 chr4 140473995 140476025 -61852322 - Tigger1 DNA MER2_type -319 2099 24 22 35 0 0 chr4 140476274 140476303 -61852044 + AT_rich Low_complexity Low_complexity 1 29 0 262 340 19 0 chr4 140477055 140477161 -61851186 + L2 LINE L2 3202 3309 -4 217 240 0 0 chr4 140478427 140478477 -61849870 - L2 LINE L2 -9 3263 3214 2221 78 0 0 chr4 140478785 140479076 -61849271 - AluY SINE Alu 0 304 14 532 306 115 46 chr4 140479145 140479625 -61848722 + LTR33A LTR ERVL 7 519 -4 501 339 123 14 chr4 140480133 140480573 -61847774 - L2 LINE L2 -353 2961 2474 1626 210 104 28 chr4 140482638 140483071 -61845276 + MER31B LTR ERV1 1 466 0 1946 142 7 13 chr4 140483214 140483524 -61844823 + AluSx SINE Alu 1 308 -4 30 0 0 0 chr4 140483569 140483599 -61844748 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr4 140483850 140483876 -61844471 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr4 140484792 140484815 -61843532 + AT_rich Low_complexity Low_complexity 1 23 0 30 69 0 0 chr4 140485196 140485254 -61843093 + AT_rich Low_complexity Low_complexity 1 58 0 207 214 0 0 chr4 140485653 140485695 -61842652 + T-rich Low_complexity Low_complexity 1 42 0 216 111 0 0 chr4 140486672 140486708 -61841639 + (TG)n Simple_repeat Simple_repeat 1 36 0 25 31 0 0 chr4 140487184 140487216 -61841131 + AT_rich Low_complexity Low_complexity 1 32 0 243 0 0 0 chr4 140487370 140487397 -61840950 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1661 189 33 0 chr4 140487497 140487798 -61840549 - 7SLRNA srpRNA srpRNA 0 320 10 2475 148 21 16 chr4 140488029 140488455 -61839892 - MSTA LTR MaLR 0 428 1 7873 198 37 14 chr4 140488455 140490069 -61838278 - MSTA-int LTR MaLR 0 1651 1 838 134 31 0 chr4 140490071 140490198 -61838149 - MSTA LTR MaLR -2 426 296 281 174 14 0 chr4 140490223 140490292 -61838055 + (TG)n Simple_repeat Simple_repeat 1 70 0 10669 71 0 21 chr4 140491144 140492740 -61835607 + SST1 Satellite centromeric 1 1563 0 519 90 0 0 chr4 140492756 140492834 -61835513 + (TG)n Simple_repeat Simple_repeat 1 78 0 212 188 16 0 chr4 140492857 140492921 -61835426 + CT-rich Low_complexity Low_complexity 2 66 0 10783 69 0 21 chr4 140493650 140495247 -61833100 + SST1 Satellite centromeric 1 1563 0 354 107 0 0 chr4 140495263 140495319 -61833028 + (TG)n Simple_repeat Simple_repeat 1 56 0 185 196 18 0 chr4 140495335 140495391 -61832956 + CT-rich Low_complexity Low_complexity 2 58 0 10687 69 1 26 chr4 140496128 140497731 -61830616 + SST1 Satellite centromeric 1 1563 0 384 118 0 0 chr4 140497747 140497815 -61830532 + (TG)n Simple_repeat Simple_repeat 1 68 0 203 190 17 0 chr4 140497834 140497892 -61830455 + CT-rich Low_complexity Low_complexity 2 60 0 10711 70 1 21 chr4 140498629 140500224 -61828123 + SST1 Satellite centromeric 1 1563 0 303 167 0 0 chr4 140500240 140500306 -61828041 + (TG)n Simple_repeat Simple_repeat 1 66 0 180 228 0 0 chr4 140500325 140500382 -61827965 + CT-rich Low_complexity Low_complexity 2 58 0 10652 74 0 21 chr4 140501116 140502712 -61825635 + SST1 Satellite centromeric 1 1563 0 372 77 0 0 chr4 140502728 140502780 -61825567 + (TG)n Simple_repeat Simple_repeat 1 52 0 278 222 0 25 chr4 140502797 140502878 -61825469 + CT-rich Low_complexity Low_complexity 2 80 0 10520 70 10 21 chr4 140503606 140505187 -61823160 + SST1 Satellite centromeric 1 1563 0 444 67 0 0 chr4 140505203 140505263 -61823084 + (TG)n Simple_repeat Simple_repeat 1 60 0 185 196 18 0 chr4 140505297 140505353 -61822994 + CT-rich Low_complexity Low_complexity 2 58 0 10283 71 14 19 chr4 140506090 140507635 -61820712 + SST1 Satellite centromeric 1 1536 -27 1692 143 24 11 chr4 140507644 140507931 -61820416 - MSTA LTR MaLR -137 291 1 23 0 0 0 chr4 140509997 140510020 -61818327 + AT_rich Low_complexity Low_complexity 1 23 0 1709 139 26 11 chr4 140510037 140510310 -61818037 - AluSx SINE Alu -1 311 35 207 0 0 0 chr4 140511088 140511111 -61817236 + (TCTA)n Simple_repeat Simple_repeat 1 23 0 24 32 0 0 chr4 140512007 140512038 -61816309 + AT_rich Low_complexity Low_complexity 1 31 0 48 32 0 0 chr4 140512687 140512749 -61815598 + AT_rich Low_complexity Low_complexity 1 62 0 1050 263 85 47 chr4 140513130 140513474 -61814873 + L1M4 LINE L1 2948 3277 -2869 2101 146 0 0 chr4 140513474 140513782 -61814565 + AluSx SINE Alu 1 308 -4 1050 263 85 47 chr4 140513782 140514223 -61814124 + L1M4 LINE L1 3277 3763 -2383 180 179 0 0 chr4 140514228 140514267 -61814080 + (TG)n Simple_repeat Simple_repeat 2 40 0 293 300 11 0 chr4 140514562 140514652 -61813695 + CT-rich Low_complexity Low_complexity 4 94 0 1593 244 51 68 chr4 140514653 140515345 -61813002 - L1M4 LINE L1 -1894 4252 3573 459 232 139 46 chr4 140516765 140516959 -61811388 + MER77 LTR ERV1 14 225 -380 1221 280 56 30 chr4 140516979 140517407 -61810940 + MER77 LTR ERV1 161 599 -6 405 273 76 15 chr4 140517457 140517655 -61810692 - L1MEc LINE L1 -4574 1822 1613 185 343 84 19 chr4 140517857 140518070 -61810277 - L2 LINE L2 -4 3309 3083 254 335 71 37 chr4 140518447 140518772 -61809575 - L1MEc LINE L1 -5284 921 586 1686 72 18 0 chr4 140518783 140519004 -61809343 - L1PA8 LINE L1 0 6172 5948 4545 77 15 0 chr4 140519004 140519602 -61808745 - L1PA7 LINE L1 -42 6112 5506 2264 86 0 32 chr4 140519880 140520194 -61808153 + AluY SINE Alu 1 304 -7 25 0 0 0 chr4 140521465 140521490 -61806857 + AT_rich Low_complexity Low_complexity 1 25 0 1072 271 73 3 chr4 140521867 140522207 -61806140 + MLT1A1 LTR MaLR 1 364 -1 1433 199 51 18 chr4 140523814 140524146 -61804201 - MER2 DNA MER2_type 0 344 2 196 389 0 0 chr4 140524417 140524489 -61803858 + L2 LINE L2 2843 2914 -358 538 249 162 6 chr4 140524494 140524667 -61803680 + MLT1A1 LTR MaLR 1 200 -165 445 116 3 5 chr4 140524661 140524738 -61803609 + MLT1A1 LTR MaLR 289 390 0 * 771 347 13 10 chr4 140524774 140525163 -61803184 + L1MEc LINE L1 411 800 -5596 339 270 98 25 chr4 140525242 140525527 -61802820 + L1MEc LINE L1 972 1277 -5119 326 259 25 49 chr4 140525618 140525780 -61802567 + HAL1 LINE L1 1389 1546 -961 425 299 16 71 chr4 140525890 140526074 -61802273 + MER96 DNA MER1_type 2 175 0 323 268 0 0 chr4 140526198 140526280 -61802067 + L1MEc LINE L1 1985 2066 -4330 353 263 74 41 chr4 140526347 140526590 -61801757 + L1MEc LINE L1 2047 2297 -4099 312 268 132 20 chr4 140526593 140526783 -61801564 + L1MEc LINE L1 2332 2503 -3712 548 204 83 0 chr4 140526787 140526919 -61801428 + L1MA3 LINE L1 6163 6305 0 1031 220 51 33 chr4 140527030 140527376 -61800971 + MLT1A1 LTR MaLR 1 302 -63 28 0 0 0 chr4 140527388 140527416 -61800931 + AT_rich Low_complexity Low_complexity 1 28 0 561 285 55 40 chr4 140527477 140528059 -61800288 + L1MEc LINE L1 3190 3780 -2435 278 288 85 28 chr4 140528066 140528278 -61800069 + L1MEc LINE L1 3952 4175 -2040 588 254 20 10 chr4 140528292 140528493 -61799854 + L1MEc LINE L1 4525 4727 -1488 30 27 0 0 chr4 140528495 140528532 -61799815 + AT_rich Low_complexity Low_complexity 1 37 0 1481 276 75 41 chr4 140528558 140529799 -61798548 + L1M4 LINE L1 2269 3551 -2595 1917 170 13 19 chr4 140530187 140530564 -61797783 - THE1C LTR MaLR 0 375 1 281 307 82 33 chr4 140530565 140530809 -61797538 - L2 LINE L2 -123 3190 2935 1881 152 66 20 chr4 140530828 140531176 -61797171 - THE1B LTR MaLR 0 364 1 304 321 113 23 chr4 140531179 140531444 -61796903 - L1MEc LINE L1 -6015 381 93 207 105 26 0 chr4 140531445 140531483 -61796864 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 431 283 21 18 chr4 140531589 140531872 -61796475 - L1MEc LINE L1 -4079 2317 2034 538 289 127 10 chr4 140531879 140532187 -61796160 + L1M4 LINE L1 4035 4378 -1768 1102 260 31 36 chr4 140532188 140532604 -61795743 + L1MC4 LINE L1 6896 7309 -733 1111 271 11 31 chr4 140532689 140533043 -61795304 + L1MC4 LINE L1 7321 7667 -375 230 333 28 0 chr4 140534798 140534870 -61793477 - L2 LINE L2 -47 3266 3193 2418 151 38 7 chr4 140535156 140535573 -61792774 - MER57B LTR ERV1 -4 430 1 764 321 47 18 chr4 140535875 140536215 -61792132 - LTR16B LTR ERVL -6 458 109 3776 165 82 43 chr4 140536222 140537091 -61791256 + MER4D LTR ERV1 1 903 0 254 295 154 53 chr4 140537857 140538142 -61790205 + MLT1J2 LTR MaLR 137 450 0 377 276 102 6 chr4 140539896 140540036 -61788311 + MLT1J LTR MaLR 44 232 -279 485 306 97 8 chr4 140540610 140540858 -61787489 - L1ME3 LINE L1 -9 6153 5884 1627 196 3 3 chr4 140541341 140541647 -61786700 - AluJb SINE Alu -6 306 1 213 78 62 31 chr4 140541676 140541740 -61786607 + (TA)n Simple_repeat Simple_repeat 2 67 0 2714 196 21 48 chr4 140542231 140542854 -61785493 + L1MA6 LINE L1 5694 6299 -1 25 0 0 0 chr4 140543806 140543831 -61784516 + AT_rich Low_complexity Low_complexity 1 25 0 1942 173 39 18 chr4 140544553 140544640 -61783707 - MER1B DNA MER1_type -2375 337 253 1835 246 32 60 chr4 140544640 140545210 -61783137 + MLT2B3 LTR ERVL 1 554 0 1942 173 39 18 chr4 140545210 140545452 -61782895 - MER1B DNA MER1_type -2459 253 1 900 188 19 123 chr4 140545452 140545760 -61782587 - MER93b LTR ERV1 0 373 98 2690 162 32 28 chr4 140546136 140546314 -61782033 - MER61D LTR ERV1 0 501 325 1937 138 3 10 chr4 140546314 140546610 -61781737 - AluSg SINE Alu -15 295 2 2690 162 32 28 chr4 140546610 140546930 -61781417 - MER61D LTR ERV1 -176 325 1 10957 182 44 63 chr4 140546931 140547203 -61781144 - HUERS-P3b LTR ERV1 -1 6995 6719 180 0 0 0 chr4 140547203 140547223 -61781124 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 10957 182 44 63 chr4 140547223 140549685 -61778662 - HUERS-P3b LTR ERV1 -277 6719 4211 1945 148 33 33 chr4 140549685 140550049 -61778298 - THE1B LTR MaLR 0 364 1 10957 182 44 63 chr4 140550049 140551447 -61776900 - HUERS-P3b LTR ERV1 -2785 4211 2787 2212 68 3 59 chr4 140551447 140551769 -61776578 - AluY SINE Alu -7 304 1 10957 182 44 63 chr4 140551769 140552397 -61775950 - HUERS-P3b LTR ERV1 -4209 2787 57 907 182 66 140 chr4 140552396 140552806 -61775541 - MER61D-int LTR ERV1 -4740 477 195 * 2578 165 5 5 chr4 140552902 140553303 -61775044 - MER61D LTR ERV1 -100 401 1 501 231 0 0 chr4 140554502 140554606 -61773741 - FRAM SINE Alu -10 166 63 270 159 48 16 chr4 140554606 140554669 -61773678 + LTR68 LTR ERV1 23 87 -653 1203 217 47 27 chr4 140554856 140555155 -61773192 + LTR68 LTR ERV1 309 613 -127 30 0 0 0 chr4 140555252 140555282 -61773065 + AT_rich Low_complexity Low_complexity 1 30 0 11792 233 26 32 chr4 140555381 140560095 -61768252 - L1PB3 LINE L1 -11 6859 2153 4981 239 52 31 chr4 140560081 140562762 -61765585 - L1PB3 LINE L1 -5066 1797 3 * 29 70 0 0 chr4 140562886 140562943 -61765404 + AT_rich Low_complexity Low_complexity 1 57 0 183 186 0 0 chr4 140564642 140564685 -61763662 + GA-rich Low_complexity Low_complexity 2 44 0 602 230 77 24 chr4 140565046 140565294 -61763053 + LTR37B LTR ERV1 208 468 0 444 334 66 70 chr4 140565425 140565734 -61762613 + L1MEd LINE L1 447 755 -5364 1954 142 3 3 chr4 140565734 140566029 -61762318 + AluSx SINE Alu 2 296 -16 444 334 66 70 chr4 140566029 140566237 -61762110 + L1MEd LINE L1 755 962 -5157 248 266 53 32 chr4 140566358 140566452 -61761895 + L1MEd LINE L1 1161 1256 -4863 736 291 295 22 chr4 140566865 140566984 -61761363 + L2 LINE L2 1864 1949 -1365 260 49 49 0 chr4 140566984 140567025 -61761322 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 736 291 295 22 chr4 140567025 140567458 -61760889 + L2 LINE L2 1949 2567 -747 207 343 99 28 chr4 140567531 140567744 -61760603 + L2 LINE L2 2996 3223 -90 927 261 85 35 chr4 140567893 140568234 -61760113 + MLT1C LTR MaLR 110 467 0 26 50 0 0 chr4 140568516 140568556 -61759791 + AT_rich Low_complexity Low_complexity 1 40 0 331 331 90 28 chr4 140568619 140568975 -61759372 + L1ME2 LINE L1 5499 5876 -288 21 0 0 0 chr4 140569789 140569810 -61758537 + AT_rich Low_complexity Low_complexity 1 21 0 26 109 0 0 chr4 140570251 140570361 -61757986 + AT_rich Low_complexity Low_complexity 1 110 0 22 70 0 0 chr4 140570550 140570593 -61757754 + AT_rich Low_complexity Low_complexity 1 43 0 1350 263 57 46 chr4 140570875 140571447 -61756900 + MLT1G LTR MaLR 13 549 0 274 276 40 0 chr4 140572607 140572683 -61755664 + (TATATG)n Simple_repeat Simple_repeat 3 81 0 217 339 94 31 chr4 140572785 140573009 -61755338 - MIR SINE MIR 0 262 25 943 197 52 142 chr4 140573299 140573700 -61754647 - MLT1A1 LTR MaLR 0 365 1 264 252 117 0 chr4 140573700 140573811 -61754536 + MER103 DNA DNA 31 154 -12 21 0 0 0 chr4 140574497 140574518 -61753829 + AT_rich Low_complexity Low_complexity 1 21 0 651 162 0 0 chr4 140574518 140574629 -61753718 - AluJb SINE Alu -14 298 188 1672 221 133 79 chr4 140574631 140575532 -61752815 - LTR1B LTR ERV1 -4 1016 1 1154 182 5 0 chr4 140575532 140575724 -61752623 - AluJb SINE Alu -119 193 1 29 60 0 0 chr4 140575751 140575801 -61752546 + AT_rich Low_complexity Low_complexity 1 50 0 48 43 0 0 chr4 140576074 140576143 -61752204 + AT_rich Low_complexity Low_complexity 1 69 0 204 321 18 0 chr4 140576349 140576405 -61751942 - L2 LINE L2 -212 3060 3004 377 302 88 17 chr4 140576411 140576729 -61751618 + L1MC/D LINE L1 5308 5648 -530 598 289 115 17 chr4 140576860 140577095 -61751252 + MIR SINE MIR 5 262 0 994 251 5 0 chr4 140579548 140579771 -61748576 + MER58A DNA MER1_type 1 224 0 278 239 127 70 chr4 140579783 140579925 -61748422 + MER69A DNA AcHobo 20 169 -8 2063 153 19 25 chr4 140580026 140580392 -61747955 + THE1B LTR MaLR 1 364 0 10462 104 37 5 chr4 140580392 140581923 -61746424 + THE1B-int LTR MaLR 1 1580 0 1914 164 39 25 chr4 140581923 140582282 -61746065 + THE1B LTR MaLR 1 364 0 938 82 32 6 chr4 140583742 140583900 -61744447 + (TTTC)n Simple_repeat Simple_repeat 2 163 0 1969 129 4 0 chr4 140583902 140584182 -61744165 - AluSq SINE Alu -32 281 1 22 0 0 0 chr4 140584797 140584819 -61743528 + AT_rich Low_complexity Low_complexity 1 22 0 574 71 12 0 chr4 140585481 140585566 -61742781 - L1PA13 LINE L1 0 6163 6078 403 197 13 0 chr4 140585964 140586040 -61742307 + MER45A DNA AcHobo 101 177 -1 1392 236 109 16 chr4 140586307 140586730 -61741617 + MLT1C LTR MaLR 6 467 0 634 244 0 0 chr4 140587254 140587381 -61740966 + MER45A DNA AcHobo 52 178 0 2172 292 74 60 chr4 140590616 140590922 -61737425 + L2 LINE L2 1098 1398 -1916 219 69 0 0 chr4 140590922 140590951 -61737396 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 2172 292 74 60 chr4 140590951 140591045 -61737302 + L2 LINE L2 1398 1489 -1825 752 235 17 65 chr4 140591045 140591275 -61737072 - MER20 DNA MER1_type 0 219 1 2172 292 74 60 chr4 140591275 140592079 -61736268 + L2 LINE L2 1489 2319 -995 821 292 106 49 chr4 140592093 140592582 -61735765 + LTR33A LTR ERVL 2 518 -5 722 276 51 96 chr4 140592587 140593299 -61735048 + L2 LINE L2 2315 3070 -243 180 293 69 0 chr4 140593482 140593540 -61734807 + L3 LINE CR1 932 993 -584 339 317 10 0 chr4 140593657 140593761 -61734586 + MIR SINE MIR 110 214 -48 198 278 127 32 chr4 140594429 140594555 -61733792 + L2 LINE L2 2717 2854 -460 2376 78 0 0 chr4 140594750 140595045 -61733302 + AluY SINE Alu 1 295 -16 180 0 0 0 chr4 140595071 140595091 -61733256 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 288 267 85 36 chr4 140595579 140595744 -61732603 + L1MC5 LINE L1 7692 7864 -97 24 0 0 0 chr4 140596270 140596294 -61732053 + AT_rich Low_complexity Low_complexity 1 24 0 1031 355 26 0 chr4 140597693 140598116 -61730231 - LTR16B LTR ERVL -9 455 22 24 32 0 0 chr4 140598231 140598262 -61730085 + AT_rich Low_complexity Low_complexity 1 31 0 26 82 0 0 chr4 140599068 140599129 -61729218 + AT_rich Low_complexity Low_complexity 1 61 0 24 67 0 0 chr4 140599188 140599233 -61729114 + AT_rich Low_complexity Low_complexity 1 45 0 715 241 23 17 chr4 140599434 140599608 -61728739 + MER45A DNA AcHobo 1 175 -3 213 39 0 0 chr4 140599713 140599739 -61728608 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 290 331 130 41 chr4 140601747 140602185 -61726162 + L2 LINE L2 590 1066 -2248 1288 235 19 107 chr4 140602789 140603023 -61725324 - MLT1D LTR MaLR -28 477 224 1095 155 10 5 chr4 140603023 140603230 -61725117 + L1MA6 LINE L1 6087 6294 -6 1288 235 19 107 chr4 140603230 140603486 -61724861 - MLT1D LTR MaLR -281 224 33 2087 147 37 6 chr4 140603486 140603839 -61724508 - THE1B LTR MaLR 0 364 1 1288 235 19 107 chr4 140603839 140603870 -61724477 - MLT1D LTR MaLR -472 33 1 183 42 0 0 chr4 140604083 140604107 -61724240 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 383 245 21 0 chr4 140604605 140604699 -61723648 + MER115 DNA AcHobo 597 692 -1 384 255 11 0 chr4 140605176 140605270 -61723077 + MIR SINE MIR 103 197 -65 1785 158 37 0 chr4 140605277 140605387 -61722960 + AluSx SINE Alu 1 105 -207 243 0 0 0 chr4 140605387 140605414 -61722933 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1785 158 37 0 chr4 140605414 140605601 -61722746 + AluSx SINE Alu 105 309 -3 4064 94 50 0 chr4 140606452 140607056 -61721291 + L1PA8 LINE L1 5539 6172 0 634 251 86 80 chr4 140607677 140608095 -61720252 + L1ME1 LINE L1 4755 5178 -968 8888 94 8 1 chr4 140608095 140610122 -61718225 - L1PA7 LINE L1 -10 6144 4102 634 251 86 80 chr4 140610122 140610190 -61718157 + L1ME1 LINE L1 5178 5244 -902 440 288 92 20 chr4 140610236 140610389 -61717958 + MER77 LTR ERV1 62 225 -380 * 1831 230 55 40 chr4 140610357 140610813 -61717534 + MER77 LTR ERV1 143 605 0 1903 253 73 49 chr4 140610813 140611719 -61716628 + L1ME1 LINE L1 5243 6161 -5 24 32 0 0 chr4 140611859 140611890 -61716457 + AT_rich Low_complexity Low_complexity 1 31 0 450 300 70 34 chr4 140613039 140613396 -61714951 + L1ME LINE L1 5458 5824 -346 289 318 167 26 chr4 140613938 140614130 -61714217 - MIR SINE MIR 0 262 44 242 56 28 0 chr4 140614250 140614286 -61714061 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 25 31 0 0 chr4 140615132 140615164 -61713183 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr4 140615175 140615218 -61713129 + AT_rich Low_complexity Low_complexity 1 43 0 24 67 0 0 chr4 140616425 140616470 -61711877 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr4 140616546 140616572 -61711775 + AT_rich Low_complexity Low_complexity 1 26 0 29 47 0 0 chr4 140616976 140617019 -61711328 + AT_rich Low_complexity Low_complexity 1 43 0 26 64 0 0 chr4 140617262 140617309 -61711038 + AT_rich Low_complexity Low_complexity 1 47 0 1743 214 82 17 chr4 140618663 140619079 -61709268 - MER74A LTR ERVL 0 558 116 420 335 29 28 chr4 140619297 140619595 -61708752 - L1MC/D LINE L1 -521 5641 5503 2178 126 0 0 chr4 140619660 140619962 -61708385 + AluSx SINE Alu 1 302 -10 742 220 5 47 chr4 140620830 140621021 -61707326 + MLT1A2 LTR MaLR 6 188 -186 574 216 61 39 chr4 140621055 140621236 -61707111 + MLT1A2 LTR MaLR 186 370 -4 7767 216 31 22 chr4 140622040 140622974 -61705373 + L1 LINE L1 2983 3908 -2238 2223 48 44 0 chr4 140622974 140623268 -61705079 + AluY SINE Alu 1 306 0 7767 216 31 22 chr4 140623268 140624381 -61703966 + L1 LINE L1 3908 5048 -1098 1982 201 48 0 chr4 140624411 140624808 -61703539 + L1PA16 LINE L1 5742 6157 -9 1537 275 47 32 chr4 140624919 140625385 -61702962 - MER74A LTR ERVL -85 473 1 * 1938 225 17 14 chr4 140625385 140625788 -61702559 + MER89-int LTR ERV1 6397 6800 -1 1503 234 32 26 chr4 140625792 140626222 -61702125 + MER89 LTR ERV1 28 559 0 583 274 66 23 chr4 140626222 140626525 -61701822 + L1ME2 LINE L1 4006 4321 -1825 1166 201 5 5 chr4 140626526 140626740 -61701607 + MER46A DNA MER2_type 1 214 -22 258 330 31 10 chr4 140626761 140626858 -61701489 - L2 LINE L2 0 3313 3215 705 216 7 0 chr4 140626860 140626999 -61701348 - MER67A LTR ERV1 0 543 404 1446 193 0 0 chr4 140626999 140627273 -61701074 - L1PA16 LINE L1 -16 6150 5877 400 298 57 40 chr4 140627310 140627733 -61700614 + L1ME2 LINE L1 4326 4755 -1391 648 198 48 8 chr4 140627896 140628022 -61700325 - FRAM SINE Alu -45 131 1 1295 273 49 53 chr4 140628376 140629253 -61699094 + L1ME2 LINE L1 5282 6132 -38 325 274 91 51 chr4 140629278 140629475 -61698872 + HAL1b LINE L1 451 655 -693 22 0 0 0 chr4 140629609 140629631 -61698716 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr4 140630014 140630049 -61698298 + AT_rich Low_complexity Low_complexity 1 35 0 319 294 33 46 chr4 140631244 140631397 -61696950 - HAL1 LINE L1 -1463 1044 894 201 239 0 0 chr4 140631460 140631506 -61696841 + CT-rich Low_complexity Low_complexity 3 48 0 23 33 0 0 chr4 140631886 140631916 -61696431 + AT_rich Low_complexity Low_complexity 1 30 0 47 19 0 0 chr4 140631985 140632039 -61696308 + AT_rich Low_complexity Low_complexity 1 54 0 317 355 70 33 chr4 140632375 140632727 -61695620 - L1MC4 LINE L1 -504 5829 5522 253 299 47 16 chr4 140632899 140633026 -61695321 + L1ME LINE L1 5656 5786 -376 637 232 91 18 chr4 140634009 140634229 -61694118 - MLT1K LTR MaLR -119 469 234 41 103 0 0 chr4 140634430 140634576 -61693771 + AT_rich Low_complexity Low_complexity 1 146 0 646 158 73 61 chr4 140634800 140634901 -61693446 - L1MC3 LINE L1 0 7785 7680 1993 150 0 16 chr4 140634901 140635215 -61693132 - AluJb SINE Alu -3 309 1 646 158 73 61 chr4 140635215 140635277 -61693070 - L1MC3 LINE L1 -105 7680 7620 1173 154 119 9 chr4 140635408 140635739 -61692608 - L1M2 LINE L1 -743 5403 5186 22 0 0 0 chr4 140636343 140636365 -61691982 + AT_rich Low_complexity Low_complexity 1 22 0 326 314 0 0 chr4 140636369 140636471 -61691876 + MER103 DNA DNA 26 127 -39 1137 276 36 62 chr4 140636983 140637646 -61690701 + L1M4 LINE L1 3595 4240 -1906 223 278 33 11 chr4 140637658 140637748 -61690599 + GA-rich Low_complexity Low_complexity 6 97 0 340 313 84 37 chr4 140638377 140638591 -61689756 + L1M4 LINE L1 3883 4106 -2040 503 288 6 5 chr4 140638605 140638803 -61689544 + L1M4 LINE L1 4456 4655 -1491 28 29 0 0 chr4 140638810 140638845 -61689502 + AT_rich Low_complexity Low_complexity 1 35 0 360 304 61 43 chr4 140638871 140639311 -61689036 + L1M4 LINE L1 2269 2716 -3430 195 259 74 0 chr4 140639576 140639630 -61688717 - L2 LINE L2 -5 3308 3251 709 163 14 14 chr4 140639676 140639817 -61688530 + L1PA16 LINE L1 6026 6166 0 862 278 61 49 chr4 140639878 140640059 -61688288 + L1MC4 LINE L1 6517 6694 -1348 1993 133 0 3 chr4 140640059 140640360 -61687987 - AluY SINE Alu -11 300 1 862 278 61 49 chr4 140640360 140640671 -61687676 + L1MC4 LINE L1 6694 7015 -1027 1026 151 12 6 chr4 140640844 140641016 -61687331 + AluSp SINE Alu 121 293 -20 193 320 51 0 chr4 140641447 140641525 -61686822 + MIR SINE MIR 76 157 -105 23 78 0 0 chr4 140642265 140642316 -61686031 + AT_rich Low_complexity Low_complexity 1 51 0 1020 164 89 50 chr4 140643004 140643285 -61685062 + MER58B DNA MER1_type 45 336 -5 248 216 0 0 chr4 140643359 140643410 -61684937 + MER58B DNA MER1_type 291 341 0 2294 87 7 0 chr4 140643459 140643758 -61684589 + AluSp SINE Alu 1 301 -12 1937 134 17 0 chr4 140644366 140644665 -61683682 + AluSp SINE Alu 1 304 -9 192 418 16 25 chr4 140644830 140644952 -61683395 + L2 LINE L2 3149 3269 -3 184 352 28 62 chr4 140646445 140646590 -61681757 + MIR SINE MIR 66 205 -57 180 0 0 0 chr4 140646787 140646807 -61681540 + (TA)n Simple_repeat Simple_repeat 2 21 0 2330 169 14 27 chr4 140647222 140647706 -61680641 - L1MA5 LINE L1 0 6300 5823 311 370 163 25 chr4 140648167 140648646 -61679701 + L2 LINE L2 2147 2691 -623 195 286 0 0 chr4 140648771 140648827 -61679520 + L2 LINE L2 2698 2753 -561 3909 219 89 25 chr4 140649313 140649581 -61678766 - L1MC4a LINE L1 0 7808 7559 2211 79 0 16 chr4 140649581 140649884 -61678463 + AluY SINE Alu 6 303 -8 3909 219 89 25 chr4 140649884 140650744 -61677603 - L1MC4a LINE L1 -249 7559 6681 2309 98 0 3 chr4 140650744 140651049 -61677298 + AluY SINE Alu 1 304 -7 3909 219 89 25 chr4 140651049 140651226 -61677121 - L1MC4a LINE L1 -1127 6681 6517 709 163 14 14 chr4 140651287 140651428 -61676919 - L1PA16 LINE L1 0 6166 6026 195 259 74 0 chr4 140651474 140651528 -61676819 + L2 LINE L2 3251 3308 -5 25 75 0 0 chr4 140652769 140652822 -61675525 + AT_rich Low_complexity Low_complexity 1 53 0 193 320 51 0 chr4 140653560 140653638 -61674709 - MIR SINE MIR -105 157 76 1975 132 3 10 chr4 140654069 140654364 -61673983 - AluSq SINE Alu -20 293 1 769 37 0 19 chr4 140654556 140654663 -61673684 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 29 0 0 0 chr4 140655229 140655258 -61673089 + AT_rich Low_complexity Low_complexity 1 29 0 30 27 0 0 chr4 140655858 140655895 -61672452 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr4 140655972 140655995 -61672352 + AT_rich Low_complexity Low_complexity 1 23 0 475 295 100 50 chr4 140656007 140656448 -61671899 + L1M4 LINE L1 2110 2572 -3574 1561 201 160 9 chr4 140656509 140656914 -61671433 + MER31B LTR ERV1 1 543 0 280 296 36 86 chr4 140656915 140657030 -61671317 - L2 LINE L2 -630 2684 2584 1198 253 19 35 chr4 140657030 140657401 -61670946 + MLT1A1 LTR MaLR 1 365 0 280 296 36 86 chr4 140657401 140657505 -61670842 - L2 LINE L2 -730 2584 2476 244 343 82 0 chr4 140658046 140658180 -61670167 + L1ME LINE L1 3 147 -5923 259 320 23 16 chr4 140658301 140658429 -61669918 + L1ME LINE L1 153 281 -5980 401 240 9 173 chr4 140658800 140659091 -61669256 + L1M4 LINE L1 3850 4083 -2063 1431 225 39 51 chr4 140659091 140659598 -61668749 - MLT1D LTR MaLR -4 501 1 401 240 9 173 chr4 140659598 140659635 -61668712 + L1M4 LINE L1 4083 4124 -2022 317 332 60 32 chr4 140659645 140659862 -61668485 - L2 LINE L2 -1528 1786 1564 329 234 0 65 chr4 140659929 140660052 -61668295 - L1MC4 LINE L1 -1339 6983 1996 2320 81 3 10 chr4 140660192 140660499 -61667848 + AluY SINE Alu 1 305 -6 34 0 0 0 chr4 140660835 140660869 -61667478 + AT_rich Low_complexity Low_complexity 1 34 0 657 278 38 19 chr4 140660985 140661194 -61667153 + MER58A DNA MER1_type 2 214 -10 650 298 72 41 chr4 140662876 140663239 -61665108 - MLT1I LTR MaLR -34 375 2 467 261 120 35 chr4 140663318 140663665 -61664682 - MLT1J2 LTR MaLR 0 450 3 853 193 58 82 chr4 140664237 140664480 -61663867 + MER8 DNA MER2_type 1 237 -2 397 319 42 9 chr4 140664590 140664793 -61663554 + MIR SINE MIR 27 235 -27 519 168 46 0 chr4 140664794 140664907 -61663440 - LTR12 LTR ERV1 0 714 362 256 238 0 36 chr4 140664907 140664991 -61663356 - LTR30 LTR ERV1 -98 624 544 646 112 112 178 chr4 140664991 140665232 -61663115 - LTR12 LTR ERV1 -437 277 53 229 250 0 0 chr4 140665232 140665284 -61663063 - LTR30 LTR ERV1 -670 52 1 296 302 42 72 chr4 140665454 140665628 -61662719 - Charlie2 DNA MER1_type -2524 258 93 1713 250 57 35 chr4 140665628 140666136 -61662211 + LTR40a LTR ERVL 1 519 0 296 302 42 72 chr4 140666136 140666226 -61662121 - Charlie2 DNA MER1_type -2689 93 2 319 289 154 0 chr4 140668007 140668111 -61660236 - MIR3 SINE MIR -6 202 83 22 70 0 0 chr4 140668178 140668221 -61660126 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr4 140668494 140668527 -61659820 + AT_rich Low_complexity Low_complexity 1 33 0 745 329 114 40 chr4 140669406 140670318 -61658029 - L2 LINE L2 -1 3312 2329 26 50 0 0 chr4 140670330 140670370 -61657977 + AT_rich Low_complexity Low_complexity 1 40 0 38 0 0 0 chr4 140670509 140670547 -61657800 + AT_rich Low_complexity Low_complexity 1 38 0 2006 106 25 3 chr4 140671902 140672185 -61656162 - AluSx SINE Alu -19 293 5 35 0 0 0 chr4 140672786 140672821 -61655526 + AT_rich Low_complexity Low_complexity 1 35 0 39 95 0 0 chr4 140672984 140673100 -61655247 + AT_rich Low_complexity Low_complexity 1 116 0 25 0 0 0 chr4 140673369 140673394 -61654953 + AT_rich Low_complexity Low_complexity 1 25 0 245 310 52 9 chr4 140673759 140673875 -61654472 - L1ME LINE L1 -479 5642 5522 233 233 50 0 chr4 140674054 140674114 -61654233 + MLT1J1 LTR MaLR 69 131 -315 2025 124 3 0 chr4 140674472 140674763 -61653584 + AluSg SINE Alu 1 292 -18 22 0 0 0 chr4 140676298 140676320 -61652027 + AT_rich Low_complexity Low_complexity 1 22 0 246 273 35 71 chr4 140676904 140677088 -61651259 + L1ME LINE L1 5508 5678 -443 324 0 0 0 chr4 140677088 140677124 -61651223 + (CA)n Simple_repeat Simple_repeat 2 37 0 246 273 35 71 chr4 140677124 140677184 -61651163 + L1ME LINE L1 5678 5739 -382 249 91 38 75 chr4 140677221 140677355 -61650992 + (TTTA)n Simple_repeat Simple_repeat 1 128 0 842 341 148 2 chr4 140677411 140677863 -61650484 + MER69 DNA AcHobo 1 518 -2008 542 269 75 63 chr4 140677878 140678209 -61650138 + LTR68 LTR ERV1 114 448 -292 950 299 70 13 chr4 140678399 140678858 -61649489 + L1ME3A LINE L1 5515 5999 -171 1621 249 52 74 chr4 140679012 140679622 -61648725 + MER77 LTR ERV1 9 605 0 1357 159 13 76 chr4 140680120 140680421 -61647926 - AluJo SINE Alu -30 282 1 1814 190 18 0 chr4 140680480 140680806 -61647541 - Tigger1 DNA MER2_type -2085 333 2 316 174 128 0 chr4 140680837 140680923 -61647424 + L1MC4 LINE L1 6609 6705 -1337 470 121 30 10 chr4 140680924 140681023 -61647324 + (TA)n Simple_repeat Simple_repeat 1 101 0 1047 197 70 36 chr4 140681024 140681362 -61646985 + MLT1A2 LTR MaLR 1 365 0 4394 135 8 3 chr4 140682684 140683393 -61644954 - L1PA13 LINE L1 0 6163 5451 359 365 18 6 chr4 140683398 140683568 -61644779 - MER5B DNA MER1_type -3 175 4 308 375 81 18 chr4 140684808 140685080 -61643267 + L1MEd LINE L1 7 295 -5824 267 237 35 79 chr4 140685180 140685294 -61643053 + L1MEd LINE L1 457 565 -5554 244 229 0 0 chr4 140685371 140685419 -61642928 - MER58B DNA MER1_type -15 326 279 332 299 57 6 chr4 140685421 140685598 -61642749 + L1MEd LINE L1 965 1150 -4969 582 249 69 116 chr4 140685991 140686413 -61641934 + MER57A LTR ERV1 2 403 0 388 304 32 0 chr4 140687016 140687141 -61641206 + MIR SINE MIR 67 195 -67 256 290 85 54 chr4 140687435 140687659 -61640688 + L1MEd LINE L1 1027 1257 -4862 326 314 0 0 chr4 140688031 140688133 -61640214 - MER103 DNA DNA -39 127 26 22 0 0 0 chr4 140688137 140688159 -61640188 + AT_rich Low_complexity Low_complexity 1 22 0 3011 160 92 21 chr4 140688761 140689326 -61639021 + L1MA6 LINE L1 5183 5801 -499 453 55 41 0 chr4 140689326 140689399 -61638948 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 3011 160 92 21 chr4 140689399 140689545 -61638802 + L1MA6 LINE L1 5801 5935 -365 22 0 0 0 chr4 140689588 140689610 -61638737 + AT_rich Low_complexity Low_complexity 1 22 0 201 218 0 58 chr4 140691216 140691303 -61637044 + T-rich Low_complexity Low_complexity 4 85 0 2990 182 36 12 chr4 140691848 140692437 -61635910 + MER6A DNA MER2_type 2 604 -1 622 244 0 0 chr4 140692593 140692716 -61635631 - FLAM_A SINE Alu -9 124 2 1169 172 108 19 chr4 140692902 140693170 -61635177 - AluJo SINE Alu 0 312 21 24 32 0 0 chr4 140693365 140693396 -61634951 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 140693545 140693569 -61634778 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr4 140694214 140694243 -61634104 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 140694792 140694814 -61633533 + AT_rich Low_complexity Low_complexity 1 22 0 687 327 132 32 chr4 140696216 140696774 -61631573 + L2 LINE L2 2670 3288 -25 2082 168 29 88 chr4 140697137 140697249 -61631098 + L1PB4 LINE L1 5661 5778 -378 5553 67 0 4 chr4 140697249 140697960 -61630387 + L1PA7 LINE L1 5438 6147 -7 2082 168 29 88 chr4 140697960 140698371 -61629976 + L1PB4 LINE L1 5778 6153 -3 1354 174 136 0 chr4 140700043 140700301 -61628046 - AluJb SINE Alu -8 294 2 2300 128 22 145 chr4 140700788 140701297 -61627050 - MER4E LTR ERV1 -29 750 305 2107 127 0 6 chr4 140701882 140702196 -61626151 + AluSq SINE Alu 1 312 -1 207 0 0 0 chr4 140703363 140703386 -61624961 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1732 130 42 21 chr4 140703388 140703672 -61624675 - AluSg1 SINE Alu -19 290 1 30 45 0 0 chr4 140704068 140704112 -61624235 + AT_rich Low_complexity Low_complexity 1 44 0 212 86 29 0 chr4 140704128 140704163 -61624184 + (TA)n Simple_repeat Simple_repeat 1 36 0 203 103 26 0 chr4 140704166 140704205 -61624142 + GA-rich Low_complexity Low_complexity 2 41 0 230 395 68 25 chr4 140704426 140704588 -61623759 + L2 LINE L2 3104 3272 0 2257 100 0 0 chr4 140705436 140705736 -61622611 - AluY SINE Alu -11 300 1 850 177 0 0 chr4 140705995 140706142 -61622205 - AluSg/x SINE Alu -5 305 159 1476 269 75 59 chr4 140706147 140706555 -61621792 - L1ME2 LINE L1 -191 5973 5573 2217 80 0 35 chr4 140706555 140706866 -61621481 - AluY SINE Alu -11 300 1 1476 269 75 59 chr4 140706866 140707790 -61620557 - L1ME2 LINE L1 -591 5573 4602 2094 127 0 13 chr4 140707790 140708097 -61620250 - AluY SINE Alu -8 303 1 1476 269 75 59 chr4 140708097 140708551 -61619796 - L1ME2 LINE L1 -1562 4602 4157 9172 111 12 0 chr4 140708551 140709846 -61618501 - THE1B-int LTR MaLR -270 1310 1 2177 113 48 22 chr4 140709846 140710201 -61618146 - THE1B LTR MaLR 0 364 1 302 301 83 62 chr4 140710622 140710961 -61617386 + HAL1 LINE L1 849 1194 -1313 330 347 53 43 chr4 140710987 140711382 -61616965 + HAL1 LINE L1 1241 1639 -868 22 0 0 0 chr4 140711418 140711440 -61616907 + AT_rich Low_complexity Low_complexity 1 22 0 2341 179 31 21 chr4 140711514 140712000 -61616347 - L1P LINE L1 -1580 4566 4076 1023 310 25 2 chr4 140712018 140712418 -61615929 + L1ME1 LINE L1 1420 1828 -4568 682 247 69 6 chr4 140712452 140712626 -61615721 + MER58A DNA MER1_type 2 186 -38 2216 90 3 0 chr4 140712654 140712943 -61615404 + AluSc SINE Alu 12 301 -8 1017 224 57 75 chr4 140712984 140713305 -61615042 + L1ME1 LINE L1 1871 2196 -4200 2665 174 44 19 chr4 140713305 140713833 -61614514 - MER34 LTR ERV1 -1 541 1 1017 224 57 75 chr4 140713833 140713880 -61614467 + L1ME1 LINE L1 2196 2242 -4154 2141 126 0 3 chr4 140713880 140714189 -61614158 + AluSg SINE Alu 1 308 -2 1017 224 57 75 chr4 140714189 140714205 -61614142 + L1ME1 LINE L1 2242 2257 -4139 387 60 0 0 chr4 140714205 140714255 -61614092 + (TA)n Simple_repeat Simple_repeat 2 51 0 1017 224 57 75 chr4 140714255 140714359 -61613988 + L1ME1 LINE L1 2257 2352 -4044 3431 265 51 26 chr4 140714368 140715792 -61612555 + L1ME1 LINE L1 4064 5452 -783 1534 171 3 61 chr4 140715792 140716102 -61612245 + AluJo SINE Alu 5 296 -16 1860 122 87 0 chr4 140716104 140716392 -61611955 + AluSq SINE Alu 1 313 0 3431 265 51 26 chr4 140716392 140716850 -61611497 + L1ME1 LINE L1 5452 5996 -239 337 297 16 77 chr4 140716855 140716958 -61611389 + MIR SINE MIR 2 91 -171 2627 3 0 0 chr4 140716958 140717242 -61611105 - AluY SINE Alu -12 299 16 337 297 16 77 chr4 140717242 140717320 -61611027 + MIR SINE MIR 91 172 -90 228 196 10 62 chr4 140717320 140717417 -61610930 + (TATAA)n Simple_repeat Simple_repeat 2 93 0 59 65 0 0 chr4 140717539 140717647 -61610700 + AT_rich Low_complexity Low_complexity 1 108 0 906 235 103 103 chr4 140718238 140718422 -61609925 + MLT1D LTR MaLR 3 186 -319 2069 134 3 10 chr4 140718422 140718736 -61609611 - AluSx SINE Alu 0 312 1 906 235 103 103 chr4 140718736 140719054 -61609293 + MLT1D LTR MaLR 185 505 0 631 178 0 0 chr4 140719169 140719276 -61609071 + AluJb SINE Alu 195 301 -11 337 128 0 53 chr4 140719465 140719559 -61608788 + (GGGAA)n Simple_repeat Simple_repeat 2 90 0 2331 56 3 10 chr4 140719773 140720077 -61608270 + AluY SINE Alu 1 302 -9 30 27 0 0 chr4 140721333 140721370 -61606977 + AT_rich Low_complexity Low_complexity 1 37 0 445 302 135 36 chr4 140723329 140723773 -61604574 - L1ME3A LINE L1 -222 5948 5461 250 304 123 37 chr4 140723944 140724408 -61603939 - L1ME3A LINE L1 -1125 5021 4518 339 266 0 0 chr4 140724436 140724530 -61603817 - L1ME3A LINE L1 -234 5936 5843 310 389 63 19 chr4 140724545 140724923 -61603424 - L1ME3A LINE L1 -1795 4351 3957 565 329 32 28 chr4 140724982 140725477 -61602870 - L1ME3A LINE L1 -2281 3865 3369 497 265 73 0 chr4 140725567 140725718 -61602629 + MER58B DNA MER1_type 164 325 -16 307 278 147 46 chr4 140725729 140726035 -61602312 - L1ME3A LINE L1 -2817 3329 2993 34 0 0 0 chr4 140726057 140726091 -61602256 + AT_rich Low_complexity Low_complexity 1 34 0 271 155 14 14 chr4 140727060 140727131 -61601216 + GA-rich Low_complexity Low_complexity 2 72 0 332 155 14 0 chr4 140727137 140727208 -61601139 + (CA)n Simple_repeat Simple_repeat 1 72 0 10201 67 1 22 chr4 140727209 140728804 -61599543 - SST1 Satellite centromeric -27 1560 1 208 174 14 14 chr4 140729542 140729611 -61598736 + GA-rich Low_complexity Low_complexity 2 70 0 249 163 0 0 chr4 140729617 140729666 -61598681 + (CA)n Simple_repeat Simple_repeat 1 49 0 2097 104 0 9 chr4 140729683 140730009 -61598338 - SST1 Satellite centromeric 0 1563 1241 2773 195 24 3 chr4 140730009 140730783 -61597564 + L1PB4 LINE L1 5008 5791 -365 189 0 0 0 chr4 140730783 140730804 -61597543 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 243 125 42 0 chr4 140730803 140730875 -61597472 + (TA)n Simple_repeat Simple_repeat 2 76 0 1910 159 11 50 chr4 140730883 140731066 -61597281 + L1PB4 LINE L1 5795 5957 -199 1957 152 3 0 chr4 140731066 140731368 -61596979 + AluSx SINE Alu 1 303 -9 1910 159 11 50 chr4 140731368 140731561 -61596786 + L1PB4 LINE L1 5957 6156 0 273 224 48 32 chr4 140731561 140731686 -61596661 - L1ME3A LINE L1 -3271 2875 2749 21 0 0 0 chr4 140732125 140732146 -61596201 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 140732617 140732639 -61595708 + AT_rich Low_complexity Low_complexity 1 22 0 25 65 0 0 chr4 140732680 140732726 -61595621 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr4 140733390 140733419 -61594928 + AT_rich Low_complexity Low_complexity 1 29 0 1359 175 0 0 chr4 140733423 140733657 -61594690 - L1PB3 LINE L1 -9 6145 5912 210 220 68 0 chr4 140734050 140734109 -61594238 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 21 36 0 0 chr4 140734160 140734188 -61594159 + AT_rich Low_complexity Low_complexity 1 28 0 35 41 0 0 chr4 140734451 140734500 -61593847 + AT_rich Low_complexity Low_complexity 1 49 0 1413 289 76 10 chr4 140735361 140735845 -61592502 - LTR40a LTR ERVL -1 518 3 25 75 0 0 chr4 140735954 140736007 -61592340 + AT_rich Low_complexity Low_complexity 1 53 0 1390 185 21 4 chr4 140736146 140736664 -61591683 - L1MC1 LINE L1 -6 6327 5746 2781 22 0 0 chr4 140736834 140737149 -61591198 + AluYb8 SINE Alu 1 315 -3 1864 158 0 10 chr4 140737609 140737900 -61590447 + AluSx SINE Alu 12 299 -13 21 36 0 0 chr4 140737979 140738007 -61590340 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr4 140738055 140738084 -61590263 + AT_rich Low_complexity Low_complexity 1 29 0 265 318 36 9 chr4 140738458 140738568 -61589779 + L2 LINE L2 3201 3313 0 456 321 42 21 chr4 140738700 140738940 -61589407 + MIR SINE MIR 15 259 -3 307 194 15 30 chr4 140740672 140740688 -61587659 + MER3 DNA MER1_type 36 50 -159 553 191 8 46 chr4 140740688 140740819 -61587528 - MER3 DNA MER1_type -2 207 82 2960 150 33 17 chr4 140741028 140741603 -61586744 + LTR60 LTR ERV1 1 584 -2 1366 251 93 67 chr4 140742160 140742622 -61585725 + MLT2B1 LTR ERVL 47 520 0 377 338 119 54 chr4 140742964 140743832 -61584515 + L2 LINE L2 2306 3241 -72 21 0 0 0 chr4 140744678 140744699 -61583648 + AT_rich Low_complexity Low_complexity 1 21 0 232 247 0 0 chr4 140745545 140745593 -61582754 + MER91 DNA MER1_type 1 42 -98 3539 137 38 7 chr4 140746098 140746704 -61581643 - L1PB2 LINE L1 0 6151 5527 21 71 0 0 chr4 140746833 140746875 -61581472 + AT_rich Low_complexity Low_complexity 1 42 0 3171 99 32 2 chr4 140746973 140747447 -61580900 + L1PA10 LINE L1 5681 6168 0 393 280 192 38 chr4 140747644 140748086 -61580261 - MLT1G1 LTR MaLR -37 558 12 22 35 0 0 chr4 140750278 140750307 -61578040 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr4 140750700 140750742 -61577605 + AT_rich Low_complexity Low_complexity 1 42 0 201 121 0 0 chr4 140751405 140751438 -61576909 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr4 140751656 140751677 -61576670 + AT_rich Low_complexity Low_complexity 1 21 0 1432 191 46 52 chr4 140751759 140752126 -61576221 + MLT1A1 LTR MaLR 1 365 0 1634 177 0 3 chr4 140752264 140752576 -61575771 - AluJb SINE Alu 0 311 1 2229 89 0 0 chr4 140752621 140752914 -61575433 + AluY SINE Alu 1 293 -18 815 182 21 21 chr4 140753151 140753343 -61575004 + L1MA8 LINE L1 6094 6285 -6 280 314 57 21 chr4 140753549 140753689 -61574658 - L2 LINE L2 -6 3307 3163 195 311 222 12 chr4 140753708 140753875 -61574472 - L2 LINE L2 0 3313 3112 213 315 185 0 chr4 140754003 140754095 -61574252 - L2 LINE L2 -313 3000 2892 870 250 17 30 chr4 140754281 140754513 -61573834 + MIR SINE MIR 34 262 0 675 207 74 85 chr4 140754655 140754921 -61573426 - MLT1A2 LTR MaLR -24 350 127 1168 183 60 110 chr4 140754921 140755303 -61573044 - MLT1A1 LTR MaLR -2 363 1 675 207 74 85 chr4 140755303 140755429 -61572918 - MLT1A2 LTR MaLR -247 127 1 1231 213 26 55 chr4 140756229 140756539 -61571808 + AluJo SINE Alu 1 301 -1 23 54 0 0 chr4 140756634 140756671 -61571676 + AT_rich Low_complexity Low_complexity 1 37 0 3509 67 2 2 chr4 140757206 140757667 -61570680 + L1PA8 LINE L1 5698 6158 -14 47 33 0 0 chr4 140757667 140757728 -61570619 + AT_rich Low_complexity Low_complexity 1 61 0 252 294 92 8 chr4 140757736 140757855 -61570492 - MIR SINE MIR -100 162 34 200 35 35 0 chr4 140758460 140758489 -61569858 + (TA)n Simple_repeat Simple_repeat 1 30 0 27 29 0 0 chr4 140758952 140758986 -61569361 + AT_rich Low_complexity Low_complexity 1 34 0 1828 205 44 44 chr4 140759082 140759609 -61568738 - L1MC2 LINE L1 -1 6343 5817 323 270 190 41 chr4 140760639 140761002 -61567345 - L1M4 LINE L1 -2579 3567 3151 260 296 12 0 chr4 140761214 140761295 -61567052 + MER63 DNA MER1_type 38 745 -91 24 53 0 0 chr4 140761441 140761479 -61566868 + AT_rich Low_complexity Low_complexity 1 38 0 1708 210 14 17 chr4 140761649 140762011 -61566336 + MLT1A1 LTR MaLR 5 365 0 2555 58 0 0 chr4 140762552 140762863 -61565484 - AluY SINE Alu 0 311 1 438 185 43 0 chr4 140762871 140762982 -61565365 + MLT1F1 LTR MaLR 33 130 -437 228 340 238 0 chr4 140763006 140763212 -61565135 + MLT1F1 LTR MaLR 251 505 -85 1848 119 37 31 chr4 140763316 140763610 -61564737 + AluSg SINE Alu 6 301 -9 39 68 0 0 chr4 140763895 140763969 -61564378 + AT_rich Low_complexity Low_complexity 1 74 0 330 319 122 41 chr4 140764014 140764406 -61563941 - HAL1b LINE L1 -478 870 447 424 140 47 0 chr4 140764824 140764931 -61563416 + (TA)n Simple_repeat Simple_repeat 1 112 0 25 31 0 0 chr4 140765013 140765045 -61563302 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr4 140765075 140765114 -61563233 + AT_rich Low_complexity Low_complexity 1 39 0 202 286 26 104 chr4 140765813 140765967 -61562380 + MIR SINE MIR 107 248 -14 2123 104 9 25 chr4 140766019 140766336 -61562011 - AluSx SINE Alu 0 312 1 71 24 0 0 chr4 140768287 140768372 -61559975 + AT_rich Low_complexity Low_complexity 1 85 0 784 279 106 54 chr4 140769457 140770052 -61558295 + L1M4 LINE L1 2671 3296 -2850 1095 189 5 0 chr4 140770129 140770325 -61558022 + L1MB3 LINE L1 5628 5824 -347 1411 73 6 0 chr4 140770328 140770506 -61557841 + AluSc SINE Alu 1 179 -130 446 156 13 0 chr4 140770516 140770593 -61557754 + AluJ/FRAM SINE Alu 232 309 -3 1699 175 11 32 chr4 140770597 140770975 -61557372 + L1MB3 LINE L1 5814 6183 0 2409 59 0 0 chr4 140771671 140771961 -61556386 - AluY SINE Alu -6 305 16 201 267 0 17 chr4 140771979 140772039 -61556308 + MIR SINE MIR 114 172 -90 228 196 10 62 chr4 140772039 140772136 -61556211 + (TATAA)n Simple_repeat Simple_repeat 2 93 0 59 65 0 0 chr4 140772257 140772365 -61555982 + AT_rich Low_complexity Low_complexity 1 108 0 459 324 154 4 chr4 140772796 140773043 -61555304 - L2 LINE L2 -507 2807 2524 436 245 123 9 chr4 140773917 140774023 -61554324 - FLAM_A SINE Alu -12 121 4 21 0 0 0 chr4 140775422 140775443 -61552904 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr4 140775789 140775825 -61552522 + AT_rich Low_complexity Low_complexity 1 36 0 252 130 0 0 chr4 140776587 140776633 -61551714 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 212 307 164 21 chr4 140777584 140777724 -61550623 + MIR SINE MIR 74 233 -29 27 49 0 0 chr4 140777999 140778040 -61550307 + AT_rich Low_complexity Low_complexity 1 41 0 32 0 0 0 chr4 140778389 140778421 -61549926 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 140779021 140779042 -61549305 + AT_rich Low_complexity Low_complexity 1 21 0 300 328 16 0 chr4 140779132 140779254 -61549093 - L1MCa LINE L1 -6275 151 28 1237 289 57 43 chr4 140779255 140779747 -61548600 + MLT1E LTR MaLR 89 587 -6 26 30 0 0 chr4 140780282 140780315 -61548032 + AT_rich Low_complexity Low_complexity 1 33 0 183 129 0 0 chr4 140780393 140780424 -61547923 + (TCTCCC)n Simple_repeat Simple_repeat 6 36 0 414 297 70 72 chr4 140780593 140781092 -61547255 + L1M4 LINE L1 4081 4578 -1568 770 211 12 18 chr4 140781440 140781606 -61546741 + FAM SINE Alu 3 167 -8 252 59 0 0 chr4 140782006 140782040 -61546307 + (CA)n Simple_repeat Simple_repeat 1 34 0 486 367 67 0 chr4 140782085 140782384 -61545963 - L2 LINE L2 -252 3061 2734 23 0 0 0 chr4 140782474 140782497 -61545850 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 140782616 140782646 -61545701 + AT_rich Low_complexity Low_complexity 1 30 0 183 259 93 19 chr4 140782778 140782832 -61545515 + L2 LINE L2 3199 3256 -16 715 234 0 0 chr4 140783219 140783360 -61544987 - FRAM SINE Alu -10 166 26 1921 194 13 38 chr4 140783754 140783825 -61544522 - L1 LINE L1 -1607 4539 4468 2252 115 0 0 chr4 140783825 140784138 -61544209 - AluSq SINE Alu 0 313 1 1921 194 13 38 chr4 140784138 140784540 -61543807 - L1 LINE L1 -1678 4468 4078 1097 287 62 12 chr4 140785759 140785873 -61542474 - L1ME3A LINE L1 0 6170 6063 207 0 0 0 chr4 140785873 140785896 -61542451 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1097 287 62 12 chr4 140785896 140786202 -61542145 - L1ME3A LINE L1 -107 6063 5729 403 264 9 18 chr4 140786309 140786419 -61541928 - MER90 LTR ERV1 0 614 506 1382 148 0 5 chr4 140786820 140787036 -61541311 - AluSx SINE Alu -96 216 2 32 0 0 0 chr4 140787137 140787169 -61541178 + AT_rich Low_complexity Low_complexity 1 32 0 3363 189 55 14 chr4 140788038 140788767 -61539580 + L1MB1 LINE L1 5410 6168 0 654 309 123 14 chr4 140788916 140789201 -61539146 + L2 LINE L2 2492 2807 -507 244 278 74 9 chr4 140789262 140789370 -61538977 - MIR SINE MIR -108 154 40 182 237 0 0 chr4 140789451 140789489 -61538858 + L2 LINE L2 1967 2004 -1310 2028 121 7 0 chr4 140791900 140792190 -61536157 + AluSx SINE Alu 12 303 -9 22 0 0 0 chr4 140792488 140792510 -61535837 + AT_rich Low_complexity Low_complexity 1 22 0 497 322 101 26 chr4 140792767 140792994 -61535353 - MIR SINE MIR -15 247 4 2057 112 4 0 chr4 140793082 140793405 -61534942 + AluSg SINE Alu 3 326 0 881 268 87 29 chr4 140794381 140794728 -61533619 + MLT1D LTR MaLR 1 367 -138 298 353 184 0 chr4 140795094 140795284 -61533063 + MIR SINE MIR 12 236 -26 344 297 44 82 chr4 140796644 140796937 -61531410 - L2 LINE L2 -434 2880 2599 1648 184 19 16 chr4 140797114 140797429 -61530918 + MSTA LTR MaLR 1 316 -112 1076 220 51 36 chr4 140797429 140797938 -61530409 + pTR5 LTR ERV1 743 1341 -1097 3377 117 155 108 chr4 140797973 140798758 -61529589 + LTR12 LTR ERV1 5 826 0 731 117 45 0 chr4 140798758 140798869 -61529478 + MSTA LTR MaLR 313 428 0 1990 98 77 0 chr4 140798975 140799262 -61529085 - AluY SINE Alu -2 309 1 2233 76 3 3 chr4 140800005 140800309 -61528038 - AluY SINE Alu -7 304 1 25 65 0 0 chr4 140800891 140800937 -61527410 + AT_rich Low_complexity Low_complexity 1 46 0 360 290 129 40 chr4 140802787 140803011 -61525336 - L1ME3A LINE L1 -12 6158 5915 1899 207 24 19 chr4 140803014 140803435 -61524912 + MSTC LTR MaLR 2 424 -4 257 291 83 27 chr4 140803491 140803830 -61524517 - L1MDb LINE L1 -4554 1773 1120 2077 177 16 40 chr4 140805361 140805785 -61522562 - MLT2D LTR ERVL 0 414 1 1235 229 24 42 chr4 140806248 140806585 -61521762 - MER82 DNA MER2_type -13 640 310 22 0 0 0 chr4 140806643 140806665 -61521682 + AT_rich Low_complexity Low_complexity 1 22 0 2212 216 56 32 chr4 140806670 140806710 -61521637 - MLT2B1 LTR ERVL 0 520 482 369 0 0 0 chr4 140806710 140806751 -61521596 + (TG)n Simple_repeat Simple_repeat 2 42 0 2212 216 56 32 chr4 140806751 140807214 -61521133 - MLT2B1 LTR ERVL -38 482 5 278 372 68 24 chr4 140807312 140807519 -61520828 - LTR16A LTR ERVL -82 368 153 193 284 95 0 chr4 140808108 140808182 -61520165 - MIR SINE MIR -97 165 85 21 36 0 0 chr4 140809553 140809581 -61518766 + AT_rich Low_complexity Low_complexity 1 28 0 780 146 0 7 chr4 140809726 140809863 -61518484 + L1MA3 LINE L1 6170 6305 0 21 0 0 0 chr4 140809990 140810011 -61518336 + AT_rich Low_complexity Low_complexity 1 21 0 232 257 27 0 chr4 140811403 140811477 -61516870 + (CATA)n Simple_repeat Simple_repeat 4 79 0 36 0 0 0 chr4 140811596 140811632 -61516715 + AT_rich Low_complexity Low_complexity 1 36 0 519 103 0 0 chr4 140811632 140811700 -61516647 - AluS SINE Alu -222 91 24 2267 111 0 0 chr4 140811826 140812132 -61516215 - AluSx SINE Alu -4 308 3 1839 180 3 0 chr4 140812581 140812875 -61515472 + MLT2B2 LTR ERVL 1 295 -220 295 136 0 34 chr4 140812893 140812952 -61515395 + MLT2B2 LTR ERVL 464 520 0 22 0 0 0 chr4 140814890 140814912 -61513435 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr4 140815408 140815434 -61512913 + AT_rich Low_complexity Low_complexity 1 26 0 219 332 110 73 chr4 140816026 140816584 -61511763 - L2 LINE L2 -276 3037 2456 431 286 125 27 chr4 140816728 140816952 -61511395 + MER20B DNA MER1_type 239 484 -299 25 31 0 0 chr4 140817132 140817164 -61511183 + AT_rich Low_complexity Low_complexity 1 32 0 425 291 117 27 chr4 140817316 140817615 -61510732 - L1ME LINE L1 -5070 1000 675 235 0 57 0 chr4 140817679 140817714 -61510633 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1242 181 3 107 chr4 140817718 140818027 -61510320 - AluJo SINE Alu -30 282 6 351 78 0 0 chr4 140818679 140818730 -61509617 + (T)n Simple_repeat Simple_repeat 1 51 0 1844 153 140 13 chr4 140818777 140819155 -61509192 + MSTA LTR MaLR 1 426 -2 8741 143 38 35 chr4 140819159 140820732 -61507615 + MSTA-int LTR MaLR 3 1580 0 1420 203 150 19 chr4 140820735 140821109 -61507238 + MSTB LTR MaLR 4 426 0 1570 235 21 75 chr4 140821986 140822505 -61505842 + MLT1D LTR MaLR 15 505 0 23 78 0 0 chr4 140822657 140822708 -61505639 + AT_rich Low_complexity Low_complexity 1 51 0 277 341 119 0 chr4 140823613 140823739 -61504608 - L2 LINE L2 -2 3311 3171 294 73 0 0 chr4 140823780 140823821 -61504526 + (CA)n Simple_repeat Simple_repeat 2 42 0 198 71 0 0 chr4 140823937 140823965 -61504382 + (CA)n Simple_repeat Simple_repeat 1 28 0 28 29 0 0 chr4 140824051 140824086 -61504261 + AT_rich Low_complexity Low_complexity 1 35 0 1706 179 24 50 chr4 140824170 140824550 -61503797 + L1MA10 LINE L1 5963 6332 -2 2042 148 7 0 chr4 140824862 140825167 -61503180 - AluSx SINE Alu -5 307 1 2237 96 3 0 chr4 140826402 140826695 -61501652 - AluSp SINE Alu -19 294 1 34 84 0 0 chr4 140827212 140827295 -61501052 + AT_rich Low_complexity Low_complexity 1 83 0 30 27 0 0 chr4 140828127 140828164 -61500183 + AT_rich Low_complexity Low_complexity 1 37 0 1247 310 67 72 chr4 140828401 140829659 -61498688 + HERV16 LTR ERVL 1665 3012 -1984 296 388 12 12 chr4 140829812 140830067 -61498280 + HERV16 LTR ERVL 3239 3493 -2161 346 303 31 6 chr4 140830110 140830272 -61498075 - L1MEc LINE L1 -4527 1869 1704 * 1491 248 117 22 chr4 140830271 140830819 -61497528 - L1MEc LINE L1 -5760 636 37 353 276 53 41 chr4 140830827 140830997 -61497350 - L1M4 LINE L1 -1538 4608 4437 233 57 29 0 chr4 140832052 140832087 -61496260 + (TC)n Simple_repeat Simple_repeat 1 36 0 575 299 107 28 chr4 140832306 140832700 -61495647 - L1MC5 LINE L1 -32 7929 7505 24 67 0 0 chr4 140832773 140832818 -61495529 + AT_rich Low_complexity Low_complexity 1 45 0 218 373 118 0 chr4 140833238 140833348 -61494999 + L2 LINE L2 3145 3267 -5 292 356 89 7 chr4 140833506 140833652 -61494695 + L2 LINE L2 2712 2869 -445 311 366 88 35 chr4 140833717 140834056 -61494291 + L2 LINE L2 2955 3311 -2 1676 198 3 0 chr4 140834262 140834560 -61493787 + AluJb SINE Alu 3 301 -11 1605 214 37 3 chr4 140834571 140834898 -61493449 - MER2 DNA MER2_type -6 339 2 1567 227 90 77 chr4 140835076 140835623 -61492724 - MLT2B3 LTR ERVL 0 554 1 20080 108 28 7 chr4 140835623 140838079 -61490268 - HERVL-B3 LTR ERVL 0 5654 3130 2377 128 25 3 chr4 140838079 140838446 -61489901 - THE1C LTR MaLR 0 375 1 20080 108 28 7 chr4 140838446 140838856 -61489491 - HERVL-B3 LTR ERVL -2524 3130 2730 2477 116 14 3 chr4 140838856 140839226 -61489121 + THE1C LTR MaLR 2 375 0 9541 129 35 41 chr4 140839226 140840810 -61487537 + THE1C-int LTR MaLR 1 1574 -6 2521 107 30 3 chr4 140840817 140841180 -61487167 + THE1C LTR MaLR 1 373 -2 790 107 0 0 chr4 140841181 140841293 -61487054 - HERVL-B3 LTR ERVL -2918 2736 2625 4355 77 40 5 chr4 140841293 140841868 -61486479 - LTR17 LTR ERV1 0 780 186 224 353 100 27 chr4 140842074 140842224 -61486123 + MIR SINE MIR 12 172 -90 19647 131 8 14 chr4 140842506 140846597 -61481750 - L1PA8A LINE L1 -28 6103 2037 1170 21 29 0 chr4 140846700 140846840 -61481507 - LTR17 LTR ERV1 -636 144 1 18289 118 8 3 chr4 140846840 140849454 -61478893 - HERVL-A2 LTR ERVL -3026 2628 1 1645 210 57 33 chr4 140849454 140850003 -61478344 - MLT2A2 LTR ERVL 0 554 1 681 213 26 70 chr4 140851852 140852082 -61476265 + L1MA9 LINE L1 6055 6274 -38 21 71 0 0 chr4 140852088 140852130 -61476217 + AT_rich Low_complexity Low_complexity 1 42 0 691 259 154 87 chr4 140852684 140853212 -61475135 - MLT1F1 LTR MaLR 0 567 7 559 303 43 20 chr4 140853217 140853567 -61474780 + Charlie4a DNA MER1_type 131 488 -20 302 269 84 53 chr4 140854308 140854535 -61473812 - L1ME LINE L1 -370 5751 5518 240 188 125 0 chr4 140854633 140854713 -61473634 - L1MC4 LINE L1 -1340 6702 6613 359 314 76 38 chr4 140854812 140855022 -61473325 - L1ME LINE L1 -1047 5099 4882 22 80 0 0 chr4 140855293 140855343 -61473004 + AT_rich Low_complexity Low_complexity 1 50 0 2269 104 0 0 chr4 140855621 140855920 -61472427 - AluY SINE Alu -12 299 1 1824 331 25 28 chr4 140856266 140856951 -61471396 + L1PA13 LINE L1 1 683 -6104 317 297 0 0 chr4 140857078 140857152 -61471195 + MER5A DNA MER1_type 33 106 -83 21 0 0 0 chr4 140858472 140858493 -61469854 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr4 140859053 140859084 -61469263 + AT_rich Low_complexity Low_complexity 1 31 0 4316 160 52 2 chr4 140859084 140859889 -61468458 - L1MA5 LINE L1 -8 6292 5448 899 234 75 23 chr4 140859925 140860190 -61468157 - L1MD3 LINE L1 -924 7071 6793 10543 189 7 9 chr4 140860221 140861839 -61466508 - L1PB1 LINE L1 -7 6860 5239 2079 140 48 31 chr4 140861839 140862197 -61466150 + THE1B LTR MaLR 1 364 0 10543 189 7 9 chr4 140862197 140863878 -61464469 - L1PB1 LINE L1 -1628 5239 3565 2081 161 40 14 chr4 140863892 140864245 -61464102 - THE1B LTR MaLR 0 364 3 10163 138 20 3 chr4 140864253 140865799 -61462548 - THE1B-int LTR MaLR -7 1573 1 2251 145 28 14 chr4 140865799 140866158 -61462189 - THE1B LTR MaLR 0 364 1 3067 183 56 23 chr4 140866161 140867384 -61460963 - L1PB1 LINE L1 -3310 3552 2286 1904 194 11 6 chr4 140867484 140867849 -61460498 - L1PB1 LINE L1 -5735 1128 762 754 141 31 0 chr4 140867849 140867977 -61460370 - L1PB1 LINE L1 -6731 132 1 570 177 8 15 chr4 140868093 140868223 -61460124 + L1 LINE L1 3648 3776 -2370 237 186 43 14 chr4 140868383 140868453 -61459894 + (TA)n Simple_repeat Simple_repeat 2 73 0 1003 200 0 72 chr4 140868460 140868695 -61459652 - AluJo SINE Alu -94 218 1 543 249 57 33 chr4 140868703 140869004 -61459343 - L1M4 LINE L1 -1500 5064 4757 * 1691 275 14 15 chr4 140868979 140869641 -61458706 - L1MEc LINE L1 -3311 3253 2624 400 205 0 122 chr4 140869683 140869839 -61458508 - L1MEc LINE L1 -5389 656 520 717 333 65 12 chr4 140869870 140870217 -61458130 - L1MEc LINE L1 -5621 424 52 1755 189 7 3 chr4 140870217 140870514 -61457833 - AluSx SINE Alu -12 300 3 717 333 65 12 chr4 140870514 140870566 -61457781 - L1MEc LINE L1 -5993 52 4 1337 65 0 6 chr4 140870609 140870779 -61457568 + LTR30 LTR ERV1 1 169 -553 873 90 14 35 chr4 140870879 140871023 -61457324 + HERVH LTR ERV1 7573 7713 0 2792 63 95 5 chr4 140871023 140871434 -61456913 + LTR7 LTR ERV1 1 448 -2 575 208 93 79 chr4 140871469 140871700 -61456647 - LTR12 LTR ERV1 -250 464 197 1891 231 62 62 chr4 140871992 140872659 -61455688 + LTR24-int LTR ERV1 769 2654 -3677 612 271 127 16 chr4 140872662 140872906 -61455441 + MER34C LTR ERV1 160 430 -155 313 207 0 59 chr4 140872906 140873027 -61455320 + LTR24-int LTR ERV1 1098 1190 -3681 286 329 26 16 chr4 140873357 140873566 -61454781 + LTR24-int LTR ERV1 4072 4204 -3188 745 329 55 44 chr4 140875548 140876202 -61452145 + LTR24-int LTR ERV1 6014 6674 -448 436 270 9 0 chr4 140876576 140876691 -61451656 + LTR24-int LTR ERV1 5008 5123 0 2329 177 19 48 chr4 140876691 140877172 -61451175 + LTR24 LTR ERV1 1 467 0 247 277 106 7 chr4 140877292 140877433 -61450914 + L1ME3A LINE L1 5769 5923 -247 7535 144 30 12 chr4 140879131 140879853 -61448494 - L1P3 LINE L1 -4429 2032 1324 210 118 0 0 chr4 140879853 140879887 -61448460 + (TTG)n Simple_repeat Simple_repeat 3 36 0 7535 144 30 12 chr4 140879887 140881100 -61447247 - L1P3 LINE L1 -5137 1324 1 23 33 0 0 chr4 140881509 140881539 -61446808 + AT_rich Low_complexity Low_complexity 1 30 0 514 345 34 29 chr4 140882286 140882726 -61445621 + HERVL LTR ERVL 4189 4581 -1073 2503 47 0 13 chr4 140882779 140883080 -61445267 + AluY SINE Alu 1 297 -14 25 31 0 0 chr4 140883671 140883703 -61444644 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 140884171 140884192 -61444155 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr4 140884727 140884769 -61443578 + AT_rich Low_complexity Low_complexity 1 42 0 199 345 63 69 chr4 140884922 140885096 -61443251 + MIR SINE MIR 2 174 -88 241 118 71 35 chr4 140886097 140886182 -61442165 + (TATAA)n Simple_repeat Simple_repeat 4 91 0 557 318 90 23 chr4 140886300 140886687 -61441660 - L1M4 LINE L1 -1625 4521 4109 21 0 0 0 chr4 140886729 140886750 -61441597 + AT_rich Low_complexity Low_complexity 1 21 0 1917 190 121 29 chr4 140886758 140886905 -61441442 + MER101B LTR ERV1 1 133 -437 2420 66 0 7 chr4 140886905 140887207 -61441140 - AluY SINE Alu -11 300 1 1917 190 121 29 chr4 140887207 140887581 -61440766 + MER101B LTR ERV1 133 570 0 23 68 0 0 chr4 140887964 140888008 -61440339 + AT_rich Low_complexity Low_complexity 1 44 0 2246 247 71 22 chr4 140888047 140888836 -61439511 + L1MB4 LINE L1 5221 6036 -144 216 200 17 33 chr4 140888854 140888914 -61439433 + (TA)n Simple_repeat Simple_repeat 2 60 0 2815 16 0 0 chr4 140889666 140889979 -61438368 + AluYb8 SINE Alu 1 313 -5 21 0 0 0 chr4 140889981 140890002 -61438345 + AT_rich Low_complexity Low_complexity 1 21 0 10982 157 74 11 chr4 140891054 140893066 -61435281 - Tigger1 DNA MER2_type -1 2417 280 276 279 0 0 chr4 140893307 140893375 -61434972 + (TG)n Simple_repeat Simple_repeat 1 68 0 555 40 0 27 chr4 140893405 140893479 -61434868 - LTR7 LTR ERV1 -2 448 377 21 0 0 0 chr4 140894748 140894769 -61433578 + AT_rich Low_complexity Low_complexity 1 21 0 7253 38 3 1 chr4 140894924 140896566 -61431781 + L1PA5 LINE L1 4501 6143 -11 5145 133 36 6 chr4 140897793 140899241 -61429106 + L1PA16 LINE L1 4685 6157 -9 1272 242 36 13 chr4 140899324 140899626 -61428721 + MER68 LTR ERV1 5 313 -249 7154 238 45 21 chr4 140899653 140899831 -61428516 + L1MC3 LINE L1 5239 5411 -2374 2004 154 0 6 chr4 140899831 140900142 -61428205 + AluSx SINE Alu 1 309 -3 7154 238 45 21 chr4 140900142 140902018 -61426329 + L1MC3 LINE L1 5411 7355 -430 250 147 15 44 chr4 140902012 140902080 -61426267 + L1MC3 LINE L1 7562 7627 -158 * 2564 121 0 11 chr4 140902080 140902459 -61425888 + THE1C LTR MaLR 1 375 0 373 304 127 32 chr4 140902460 140902713 -61425634 + L1ME LINE L1 4029 4305 -1841 508 306 79 42 chr4 140902751 140903179 -61425168 + MLT1H LTR MaLR 106 549 0 494 283 74 54 chr4 140903179 140903731 -61424616 + L1ME LINE L1 4422 4984 -1162 432 278 89 44 chr4 140903926 140904286 -61424061 + L1ME LINE L1 5261 5636 -526 1978 190 40 55 chr4 140904301 140904775 -61423572 + LTR24 LTR ERV1 1 467 0 1611 213 17 28 chr4 140904775 140905293 -61423054 + LTR24-int LTR ERV1 1 652 -4471 234 91 0 0 chr4 140906770 140906803 -61421544 + (GAAAA)n Simple_repeat Simple_repeat 4 36 0 3611 182 15 12 chr4 140906926 140907575 -61420772 - MER50 LTR ERV1 -83 651 1 697 306 26 9 chr4 140908354 140908583 -61419764 + LTR24-int LTR ERV1 1802 2034 -4297 497 101 0 0 chr4 140908584 140908653 -61419694 + LTR7 LTR ERV1 1 69 -381 293 244 12 0 chr4 140908655 140908737 -61419610 + L1MC4 LINE L1 6621 6703 -1339 302 226 60 12 chr4 140908737 140908821 -61419526 - L1MC4 LINE L1 -1341 6701 6614 1364 129 42 4 chr4 140908837 140909078 -61419269 + L1MC1 LINE L1 5922 6171 -162 10578 207 25 106 chr4 140909178 140910566 -61417781 + L1PA15 LINE L1 1445 2944 -3872 1588 203 29 0 chr4 140910566 140910847 -61417500 + AluJb SINE Alu 11 299 -13 10578 207 25 106 chr4 140910847 140912173 -61416174 + L1PA15 LINE L1 2944 4376 -2440 2242 166 57 12 chr4 140912173 140912576 -61415771 + MSTA LTR MaLR 3 423 -5 10578 207 25 106 chr4 140912576 140915068 -61413279 + L1PA15 LINE L1 4376 6812 -4 382 224 83 77 chr4 140915788 140915944 -61412403 + L1MDa LINE L1 3 159 -6381 1554 247 42 15 chr4 140915971 140916559 -61411788 + L1MDa LINE L1 935 1538 -5002 208 139 0 0 chr4 140917155 140917191 -61411156 + (T)n Simple_repeat Simple_repeat 1 36 0 3115 176 23 13 chr4 140917570 140918173 -61410174 + Tigger2 DNA MER2_type 1 609 -2109 650 121 153 8 chr4 140918173 140918297 -61410050 - MER61A LTR ERV1 0 343 202 20706 83 8 1 chr4 140918303 140922166 -61406181 - HERVL-A1 LTR ERVL -1690 3964 1 273 102 17 34 chr4 140922166 140922225 -61406122 - MLT2A1 LTR ERVL 0 453 396 223 200 12 12 chr4 140922225 140922305 -61406042 + (TA)n Simple_repeat Simple_repeat 1 80 0 2526 117 30 8 chr4 140922330 140922732 -61405615 - MLT2A1 LTR ERVL -31 413 3 965 116 27 7 chr4 140922757 140922904 -61405443 + Tigger2 DNA MER2_type 608 757 -1961 1271 176 29 0 chr4 140922955 140923199 -61405148 + Tigger2 DNA MER2_type 2452 2702 -16 1908 147 54 25 chr4 140923241 140923595 -61404752 + THE1B LTR MaLR 1 364 0 25 0 0 0 chr4 140923794 140923819 -61404528 + AT_rich Low_complexity Low_complexity 1 25 0 30 45 0 0 chr4 140923865 140923909 -61404438 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr4 140924393 140924416 -61403931 + AT_rich Low_complexity Low_complexity 1 23 0 28 71 0 0 chr4 140924466 140924522 -61403825 + AT_rich Low_complexity Low_complexity 1 56 0 25 0 0 0 chr4 140925544 140925569 -61402778 + AT_rich Low_complexity Low_complexity 1 25 0 786 109 22 141 chr4 140925656 140925840 -61402507 - MER67D LTR ERV1 -321 193 32 2542 87 102 17 chr4 140925953 140926366 -61401981 + LTR7 LTR ERV1 1 448 -2 20049 96 64 18 chr4 140926368 140929513 -61398834 + HERVH LTR ERV1 1 3290 -4423 3302 113 6 6 chr4 140929503 140930005 -61398342 + HERVH LTR ERV1 3492 3993 -3720 * 3996 153 15 5 chr4 140930007 140930662 -61397685 + HERVH LTR ERV1 4488 5149 -2564 1337 148 19 0 chr4 140930663 140930879 -61397468 + HERVH LTR ERV1 5600 5819 -1894 289 159 0 0 chr4 140930879 140930923 -61397424 + HERVH LTR ERV1 7324 7367 -346 4030 15 4 0 chr4 140931053 140931518 -61396829 + L1PA2 LINE L1 5684 6150 -5 747 239 63 19 chr4 140932737 140932942 -61395405 - MLT1C LTR MaLR 0 467 254 307 301 0 0 chr4 140933824 140933897 -61394450 + polypurine Low_complexity Low_complexity 1 73 0 21 57 0 0 chr4 140935172 140935207 -61393140 + AT_rich Low_complexity Low_complexity 1 35 0 28 86 0 0 chr4 140935445 140935515 -61392832 + AT_rich Low_complexity Low_complexity 1 70 0 272 132 26 26 chr4 140935638 140935714 -61392633 + (TA)n Simple_repeat Simple_repeat 1 76 0 22 0 0 0 chr4 140936186 140936208 -61392139 + AT_rich Low_complexity Low_complexity 1 22 0 575 309 43 13 chr4 140936383 140936613 -61391734 + MLT1J LTR MaLR 12 248 -263 386 183 0 0 chr4 140936721 140936792 -61391555 + MLT1J LTR MaLR 423 493 -18 294 29 0 0 chr4 140936896 140936931 -61391416 + (TA)n Simple_repeat Simple_repeat 2 36 0 572 303 88 66 chr4 140937000 140937216 -61391131 - L1M4 LINE L1 -3347 2799 2589 1868 149 0 22 chr4 140937216 140937531 -61390816 - AluJb SINE Alu -1 311 4 572 303 88 66 chr4 140937531 140937964 -61390383 - L1M4 LINE L1 -3557 2589 2136 498 129 0 0 chr4 140938349 140938419 -61389928 - Alu SINE Alu -18 292 223 1878 142 0 4 chr4 140938419 140938700 -61389647 - AluSx SINE Alu -29 283 4 411 56 0 0 chr4 140938752 140938806 -61389541 + (CA)n Simple_repeat Simple_repeat 2 55 0 873 257 5 45 chr4 140939233 140939455 -61388892 - MER58A DNA MER1_type -11 213 1 2168 132 0 6 chr4 140940251 140940562 -61387785 - AluSg SINE Alu -1 309 1 2787 3 0 7 chr4 140940567 140940877 -61387470 - AluYa5 SINE Alu 0 311 4 22 80 0 0 chr4 140941768 140941818 -61386529 + AT_rich Low_complexity Low_complexity 1 50 0 27 92 0 0 chr4 140942774 140942850 -61385497 + AT_rich Low_complexity Low_complexity 1 76 0 200 200 13 0 chr4 140943243 140943318 -61385029 + (TA)n Simple_repeat Simple_repeat 1 76 0 24 32 0 0 chr4 140943346 140943377 -61384970 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 140943974 140943998 -61384349 + AT_rich Low_complexity Low_complexity 1 24 0 42 44 4 0 chr4 140946789 140946894 -61381453 + AT_rich Low_complexity Low_complexity 1 70 0 2180 99 3 0 chr4 140948029 140948331 -61380016 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr4 140948504 140948533 -61379814 + AT_rich Low_complexity Low_complexity 1 29 0 236 357 0 0 chr4 140949354 140949483 -61378864 + (TA)n Simple_repeat Simple_repeat 1 129 0 26 50 0 0 chr4 140949566 140949606 -61378741 + AT_rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr4 140949703 140949733 -61378614 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr4 140951628 140951650 -61376697 + (T)n Simple_repeat Simple_repeat 1 22 0 27 29 0 0 chr4 140951994 140952028 -61376319 + AT_rich Low_complexity Low_complexity 1 34 0 181 282 104 80 chr4 140952605 140952768 -61375579 - L2 LINE L2 -6 3307 3141 24 53 0 0 chr4 140952832 140952870 -61375477 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr4 140953598 140953626 -61374721 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 140953740 140953768 -61374579 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr4 140954493 140954522 -61373825 + AT_rich Low_complexity Low_complexity 1 29 0 9512 32 7 2 chr4 140954522 140956445 -61371902 - L1PA4 LINE L1 -7 6148 4220 1353 32 0 0 chr4 140956445 140956603 -61371744 + L1PA4 LINE L1 4086 4243 -1903 785 357 88 35 chr4 140956965 140957489 -61370858 - L2 LINE L2 -19 3294 2734 461 188 231 0 chr4 140957593 140957753 -61370594 - MER33 DNA MER1_type 0 363 167 572 229 0 0 chr4 140958230 140958348 -61369999 - MER33 DNA MER1_type -202 122 5 22 35 0 0 chr4 140959315 140959344 -61369003 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 140959438 140959459 -61368888 + AT_rich Low_complexity Low_complexity 1 21 0 542 283 38 43 chr4 140960097 140960281 -61368066 + MER5A DNA MER1_type 7 189 0 303 352 93 28 chr4 140961819 140962035 -61366312 + ERVL-F LTR ERVL 2019 2248 -3406 642 370 42 30 chr4 140962160 140962733 -61365614 + ERVL-F LTR ERVL 2461 3040 -2724 386 221 0 0 chr4 140962752 140962829 -61365518 + MLT2B2 LTR ERVL 5 81 -434 209 192 39 19 chr4 140962843 140962895 -61365452 - MIR SINE MIR -93 169 117 35 54 0 0 chr4 140963129 140963185 -61365162 + AT_rich Low_complexity Low_complexity 1 56 0 1088 148 6 11 chr4 140963220 140963396 -61364951 + AluJo SINE Alu 84 258 -54 189 107 0 0 chr4 140963416 140963444 -61364903 + (CA)n Simple_repeat Simple_repeat 1 28 0 321 294 36 49 chr4 140963463 140963769 -61364578 + HAL1 LINE L1 2021 2322 -185 2211 296 76 86 chr4 140963906 140964465 -61363882 + ERVL-F LTR ERVL 4205 4768 -996 2284 106 0 0 chr4 140964465 140964777 -61363570 - AluSx SINE Alu 0 312 1 2211 296 76 86 chr4 140964777 140965791 -61362556 + ERVL-F LTR ERVL 4768 5763 -1 258 354 31 8 chr4 140965675 140965805 -61362542 + Ricksha DNA DNA 239 371 -1675 * 260 368 49 7 chr4 140965926 140966070 -61362277 + ERVL-F LTR ERVL 5609 5758 -6 1119 267 42 98 chr4 140966070 140966695 -61361652 + MLT2F LTR ERVL 3 592 -71 525 344 48 5 chr4 140966712 140966898 -61361449 + L2 LINE L2 2570 2763 -551 1612 183 90 6 chr4 140967190 140967523 -61360824 - MER46B DNA MER2_type 0 236 1 1359 221 62 60 chr4 140967686 140968152 -61360195 - MLT1C LTR MaLR 0 467 1 1010 321 63 25 chr4 140968278 140968673 -61359674 + LTR16A LTR ERVL 26 435 -15 1302 310 50 40 chr4 140968717 140968955 -61359392 + HERV16 LTR ERVL 6 240 -4756 213 65 0 0 chr4 140968955 140968986 -61359361 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1302 310 50 40 chr4 140968986 140969401 -61358946 + HERV16 LTR ERVL 240 666 -4330 1698 171 155 11 chr4 140969927 140970119 -61358228 + MSTA LTR MaLR 1 164 -264 180 0 0 0 chr4 140970119 140970139 -61358208 + (TC)n Simple_repeat Simple_repeat 1 20 0 1698 171 155 11 chr4 140970139 140970320 -61358027 + MSTA LTR MaLR 164 428 0 6915 156 13 34 chr4 140970322 140971553 -61356794 + MSTA-int LTR MaLR 3 1207 -373 1360 289 63 9 chr4 140972211 140972328 -61356019 + HERV16 LTR ERVL 2255 2364 -2632 225 0 0 0 chr4 140972328 140972353 -61355994 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1360 289 63 9 chr4 140972353 140972682 -61355665 + HERV16 LTR ERVL 2364 2725 -2271 1793 144 0 34 chr4 140973022 140973320 -61355027 + AluSg SINE Alu 1 288 -22 499 350 0 17 chr4 140973389 140973569 -61354778 + LTR16A LTR ERVL 99 275 -175 2019 211 44 112 chr4 140973570 140974314 -61354033 + LTR8A LTR ERV1 34 727 0 360 303 10 0 chr4 140974314 140974402 -61353945 + LTR16A LTR ERVL 258 346 -104 3952 173 34 56 chr4 140974403 140974973 -61353374 + MER54B LTR ERVL 1 549 -244 6628 111 19 15 chr4 140974973 140975976 -61352371 - LTR13 LTR ERVK 0 1007 1 3952 173 34 56 chr4 140975976 140976208 -61352139 + MER54B LTR ERVL 549 785 -8 284 299 13 0 chr4 140976202 140976279 -61352068 + LTR16A LTR ERVL 373 450 0 * 35 41 0 0 chr4 140976909 140976958 -61351389 + AT_rich Low_complexity Low_complexity 1 49 0 268 297 69 0 chr4 140977646 140977747 -61350600 + HAL1 LINE L1 34 141 -2366 28 0 0 0 chr4 140978630 140978658 -61349689 + AT_rich Low_complexity Low_complexity 1 28 0 351 355 12 6 chr4 140979088 140979260 -61349087 + L1MEc LINE L1 101 273 -6123 1982 362 23 18 chr4 140980033 140981066 -61347281 - HERV16 LTR ERVL -3709 1287 250 6662 187 9 44 chr4 140981141 140984322 -61344025 + L1PB3 LINE L1 3018 6153 -1 668 238 67 6 chr4 140984398 140984562 -61343785 + MER45A DNA AcHobo 5 178 0 23 33 0 0 chr4 140984804 140984834 -61343513 + AT_rich Low_complexity Low_complexity 1 30 0 184 286 48 16 chr4 140985093 140985156 -61343191 - L2 LINE L2 -780 2534 2470 21 0 0 0 chr4 140985508 140985529 -61342818 + AT_rich Low_complexity Low_complexity 1 21 0 199 344 63 41 chr4 140985769 140986135 -61342212 - L2 LINE L2 -1607 1707 1334 504 286 36 44 chr4 140986278 140986621 -61341726 - LTR58 LTR ERV1 -7 672 182 860 231 108 68 chr4 140987405 140987803 -61340544 - MER96B DNA MER1_type 0 417 4 183 129 0 0 chr4 140989377 140989408 -61338939 + (TAG)n Simple_repeat Simple_repeat 2 32 0 391 296 123 20 chr4 140989413 140989616 -61338731 - MIR SINE MIR 0 262 39 3422 197 23 4 chr4 140989637 140990369 -61337978 + L1 LINE L1 4111 4856 -1290 238 382 45 51 chr4 140990923 140991080 -61337267 + L2 LINE L2 3116 3271 -1 33 56 0 0 chr4 140991124 140991178 -61337169 + AT_rich Low_complexity Low_complexity 1 54 0 1948 138 3 0 chr4 140991940 140992222 -61336125 - AluSx SINE Alu -25 287 5 7380 28 22 0 chr4 140992241 140993175 -61335172 - L1PA4 LINE L1 -5 6150 5221 4207 157 80 6 chr4 140993275 140994326 -61334021 + L1PA15 LINE L1 5038 6152 -13 24 32 0 0 chr4 140994330 140994361 -61333986 + AT_rich Low_complexity Low_complexity 1 31 0 207 189 27 0 chr4 140994363 140994400 -61333947 - MIR SINE MIR -217 45 8 354 61 0 0 chr4 140995362 140995411 -61332936 + (CA)n Simple_repeat Simple_repeat 2 50 0 30354 90 6 2 chr4 140996310 141000361 -61327986 + HERVL LTR ERVL 934 4998 -656 231 295 7 81 chr4 141001472 141001621 -61326726 - MLT1L LTR MaLR -46 569 432 1550 275 71 37 chr4 141002093 141002667 -61325680 - MLT1E2 LTR MaLR -5 621 28 21 0 0 0 chr4 141003021 141003042 -61325305 + AT_rich Low_complexity Low_complexity 1 21 0 234 301 31 46 chr4 141004111 141004268 -61324079 + MIR3 SINE MIR 3 154 -67 22 35 0 0 chr4 141004640 141004669 -61323678 + AT_rich Low_complexity Low_complexity 1 29 0 389 251 120 8 chr4 141005213 141005405 -61322942 - MIR SINE MIR -10 252 2 943 288 66 47 chr4 141006009 141006495 -61321852 - ERVL LTR ERVL -1309 4455 3961 6904 66 28 0 chr4 141006901 141007774 -61320573 - MER11D LTR ERVK 0 897 1 26 93 0 0 chr4 141008913 141008988 -61319359 + AT_rich Low_complexity Low_complexity 1 75 0 777 256 28 9 chr4 141009069 141009280 -61319067 + L1PB4 LINE L1 5922 6136 -20 405 213 25 12 chr4 141010398 141010516 -61317831 + FLAM_A SINE Alu 35 153 0 1553 148 45 76 chr4 141012175 141012603 -61315744 + LTR19A LTR ERV1 1 486 0 34 42 0 0 chr4 141012958 141013006 -61315341 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr4 141013814 141013836 -61314511 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 141014263 141014284 -61314063 + AT_rich Low_complexity Low_complexity 1 21 0 445 196 98 10 chr4 141015646 141015748 -61312599 + MLT1B LTR MaLR 1 111 -279 2134 114 3 3 chr4 141015895 141016201 -61312146 + AluSx SINE Alu 1 306 -6 2187 222 16 103 chr4 141016487 141017159 -61311188 + MLT1E2 LTR MaLR 13 626 0 233 309 24 40 chr4 141017970 141018096 -61310251 - L2 LINE L2 -1283 2031 1908 631 180 52 76 chr4 141018690 141018752 -61309595 - MLT2C1 LTR ERVL -2 395 333 267 54 0 0 chr4 141018752 141018789 -61309558 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 631 180 52 76 chr4 141018789 141018898 -61309449 - MLT2C1 LTR ERVL -64 333 228 27 29 0 0 chr4 141019543 141019577 -61308770 + AT_rich Low_complexity Low_complexity 1 34 0 1220 197 100 29 chr4 141019808 141020087 -61308260 + AluJo SINE Alu 1 299 -13 1583 187 6 29 chr4 141020595 141020910 -61307437 - AluJb SINE Alu -2 310 3 1853 182 52 75 chr4 141021416 141021893 -61306454 + MLT1C LTR MaLR 2 467 0 320 162 0 15 chr4 141022077 141022145 -61306202 + GA-rich Low_complexity Low_complexity 2 68 0 1309 218 19 0 chr4 141022164 141022435 -61305912 + AluJo SINE Alu 18 293 -19 2434 168 40 11 chr4 141022708 141023179 -61305168 - L1PB4 LINE L1 -1 7593 7109 985 118 0 0 chr4 141023280 141023416 -61304931 + AluSg/x SINE Alu 164 299 -13 23 33 0 0 chr4 141023429 141023459 -61304888 + AT_rich Low_complexity Low_complexity 1 30 0 1414 210 46 8 chr4 141023459 141023830 -61304517 - L1PB4 LINE L1 -796 6788 6404 1873 138 4 0 chr4 141024019 141024295 -61304052 + AluSx SINE Alu 1 277 -35 348 24 0 0 chr4 141024296 141024337 -61304010 + (TC)n Simple_repeat Simple_repeat 2 42 0 205 176 0 0 chr4 141024337 141024371 -61303976 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 1423 218 7 34 chr4 141025724 141026017 -61302330 + Tigger4(Zombi) DNA MER2_type 1 285 -2446 452 155 0 13 chr4 141026017 141026106 -61302241 - L1PB4 LINE L1 -3928 3656 3569 231 250 0 22 chr4 141026120 141026212 -61302135 + L1MC4 LINE L1 6614 6703 -1339 1913 95 0 11 chr4 141026237 141026499 -61301848 - AluY SINE Alu -15 296 38 4969 237 44 82 chr4 141026499 141028242 -61300105 - L1PB4 LINE L1 -3998 3586 1778 1503 92 0 10 chr4 141028242 141028449 -61299898 + AluY SINE Alu 94 298 -13 4969 237 44 82 chr4 141028449 141028625 -61299722 - L1PB4 LINE L1 -5806 1778 1597 312 70 0 0 chr4 141028625 141028668 -61299679 + (CTGGGG)n Simple_repeat Simple_repeat 4 46 0 4969 237 44 82 chr4 141028668 141028704 -61299643 - L1PB4 LINE L1 -5987 1597 1561 402 85 0 0 chr4 141028704 141028763 -61299584 + (CTGGGG)n Simple_repeat Simple_repeat 6 64 0 4969 237 44 82 chr4 141028763 141029475 -61298872 - L1PB4 LINE L1 -6023 1561 3 562 176 0 0 chr4 141029549 141029640 -61298707 + FRAM SINE Alu 65 155 -21 4694 130 11 0 chr4 141029652 141030368 -61297979 + L1PA15 LINE L1 5436 6159 -6 2056 107 0 17 chr4 141030368 141030685 -61297662 + AluSg1 SINE Alu 1 309 0 2175 107 0 3 chr4 141031173 141031471 -61296876 + AluSx SINE Alu 1 297 -15 25 51 0 0 chr4 141031741 141031780 -61296567 + AT_rich Low_complexity Low_complexity 1 39 0 210 167 0 0 chr4 141032580 141032616 -61295731 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 201 333 16 0 chr4 141034147 141034210 -61294137 + L2 LINE L2 3239 3302 -11 1074 170 129 19 chr4 141034403 141034720 -61293627 + Charlie1b DNA MER1_type 138 489 -34 271 144 93 8 chr4 141034757 141034875 -61293472 + (TA)n Simple_repeat Simple_repeat 2 129 0 2807 99 20 8 chr4 141034878 141035273 -61293074 - MLT2A1 LTR ERVL -44 400 1 5235 64 5 0 chr4 141035273 141035930 -61292417 - HERVL-A1 LTR ERVL 0 5654 4995 5893 88 51 18 chr4 141036030 141036871 -61291476 - HERVL-A1 LTR ERVL -4785 869 1 1904 105 76 13 chr4 141036871 141036914 -61291433 - MLT2A1 LTR ERVL 0 444 405 189 0 0 0 chr4 141036914 141036935 -61291412 + (TA)n Simple_repeat Simple_repeat 2 22 0 1904 105 76 13 chr4 141036935 141037195 -61291152 - MLT2A1 LTR ERVL -39 405 122 24 0 0 0 chr4 141038224 141038248 -61290099 + AT_rich Low_complexity Low_complexity 1 24 0 1404 184 9 85 chr4 141038335 141038666 -61289681 + AluJo SINE Alu 1 306 -6 25 83 0 0 chr4 141039041 141039101 -61289246 + AT_rich Low_complexity Low_complexity 1 60 0 422 278 136 8 chr4 141039101 141039541 -61288806 - L1ME LINE L1 -392 5753 5256 21 0 0 0 chr4 141039717 141039738 -61288609 + AT_rich Low_complexity Low_complexity 1 21 0 1193 228 62 24 chr4 141039770 141040060 -61288287 - AluJb SINE Alu -1 301 1 546 346 40 10 chr4 141040230 141040632 -61287715 - L1ME LINE L1 -2369 3760 3347 2203 157 24 27 chr4 141040639 141041048 -61287299 + MSTA LTR MaLR 1 408 -20 351 304 26 62 chr4 141041708 141041955 -61286392 - L1MC3 LINE L1 -864 6921 6654 1061 256 148 79 chr4 141042392 141042973 -61285374 + MLT1E2 LTR MaLR 6 626 0 29 0 0 0 chr4 141043018 141043047 -61285300 + AT_rich Low_complexity Low_complexity 1 29 0 1934 138 3 22 chr4 141043307 141043619 -61284728 - AluSx SINE Alu -6 306 1 740 264 97 60 chr4 141043657 141044245 -61284102 - L1ME LINE L1 -5026 1093 484 219 242 0 30 chr4 141044520 141044586 -61283761 + CT-rich Low_complexity Low_complexity 3 66 0 2197 135 117 5 chr4 141044699 141045084 -61283263 - MSTA LTR MaLR 0 428 1 7851 160 84 21 chr4 141045084 141046569 -61281778 - MSTA-int LTR MaLR 0 1580 3 1932 136 136 18 chr4 141046571 141046954 -61281393 - MSTA LTR MaLR 0 428 1 226 290 28 47 chr4 141047926 141048033 -61280314 - HAL1 LINE L1 -2260 247 143 27 49 0 0 chr4 141048033 141048074 -61280273 + AT_rich Low_complexity Low_complexity 1 41 0 5160 174 32 15 chr4 141048083 141049918 -61278429 - L1MA4 LINE L1 -30 6270 4425 666 163 4 35 chr4 141049942 141050236 -61278111 + (TA)n Simple_repeat Simple_repeat 1 284 0 1579 162 9 28 chr4 141050239 141050543 -61277804 + MER51A LTR ERV1 350 640 0 295 367 167 9 chr4 141050543 141050878 -61277469 - L2 LINE L2 -31 3282 2895 225 204 0 20 chr4 141050890 141050939 -61277408 + GA-rich Low_complexity Low_complexity 3 50 0 367 273 84 7 chr4 141051038 141051192 -61277155 - LTR33A LTR ERVL -2 521 356 246 321 90 22 chr4 141051288 141051422 -61276925 - LTR33A LTR ERVL -287 236 94 220 191 0 0 chr4 141051500 141051547 -61276800 + (CA)n Simple_repeat Simple_repeat 2 48 0 283 60 40 0 chr4 141051549 141051599 -61276748 + (CACAC)n Simple_repeat Simple_repeat 3 54 0 22 0 0 0 chr4 141052210 141052232 -61276115 + AT_rich Low_complexity Low_complexity 1 22 0 451 314 23 77 chr4 141052323 141052750 -61275597 - MLT1L LTR MaLR -81 534 131 273 324 123 33 chr4 141052850 141053094 -61275253 - MLT1I LTR MaLR -8 401 136 876 308 23 17 chr4 141054503 141054805 -61273542 - MLT1I LTR MaLR -49 360 57 1010 196 0 40 chr4 141054859 141055083 -61273264 - L1MC1 LINE L1 0 6333 6119 2120 88 3 7 chr4 141056800 141057106 -61271241 + AluSx SINE Alu 4 312 0 24 32 0 0 chr4 141057394 141057425 -61270922 + AT_rich Low_complexity Low_complexity 1 31 0 268 316 101 58 chr4 141057829 141058041 -61270306 + L2 LINE L2 2153 2382 -932 2049 121 0 3 chr4 141058041 141058383 -61269964 + AluSx SINE Alu 1 341 0 268 316 101 58 chr4 141058383 141058447 -61269900 + L2 LINE L2 2382 2442 -872 23 0 0 0 chr4 141059533 141059556 -61268791 + AT_rich Low_complexity Low_complexity 1 23 0 2175 81 3 36 chr4 141060074 141060382 -61267965 + AluY SINE Alu 9 306 -5 508 285 180 82 chr4 141060828 141061327 -61267020 + L2 LINE L2 1193 1740 -1574 418 314 35 23 chr4 141063418 141063676 -61264671 + MIR SINE MIR 2 262 0 8101 174 12 4 chr4 141063851 141066166 -61262181 - L1PA13 LINE L1 -5 6158 3826 22247 124 16 8 chr4 141066168 141070725 -61257622 + L1PA5 LINE L1 1549 6147 -7 671 120 10 0 chr4 141070721 141070821 -61257526 + L1P LINE L1 3742 3842 -2304 * 261 297 28 0 chr4 141071862 141072007 -61256340 + (TA)n Simple_repeat Simple_repeat 2 150 0 1643 41 5 0 chr4 141072358 141072554 -61255793 + L1P2 LINE L1 5536 5732 -422 1971 167 111 10 chr4 141072841 141073230 -61255117 + MSTA LTR MaLR 1 428 0 225 0 0 0 chr4 141073534 141073564 -61254783 + (TG)n Simple_repeat Simple_repeat 1 55 0 225 0 0 0 chr4 141073564 141073589 -61254758 + (TG)n Simple_repeat Simple_repeat 2 26 0 1386 223 7 13 chr4 141073817 141074117 -61254230 + AluJo SINE Alu 2 299 -13 22 35 0 0 chr4 141074924 141074953 -61253394 + AT_rich Low_complexity Low_complexity 1 29 0 575 295 12 0 chr4 141075348 141075521 -61252826 - MER5B DNA MER1_type -3 175 1 200 290 0 16 chr4 141076006 141076068 -61252279 + (CATA)n Simple_repeat Simple_repeat 4 64 0 256 200 43 0 chr4 141077813 141077883 -61250464 + L1MA8 LINE L1 6219 6291 0 235 341 36 30 chr4 141078743 141078910 -61249437 - L2 LINE L2 0 3313 3146 2104 116 7 0 chr4 141079001 141079295 -61249052 - AluSg SINE Alu -14 296 1 22 0 0 0 chr4 141080174 141080196 -61248151 + AT_rich Low_complexity Low_complexity 1 22 0 1128 269 39 55 chr4 141080701 141081213 -61247134 + L1MC2 LINE L1 3268 3771 -2375 318 330 81 11 chr4 141081234 141081419 -61246928 + L1MC2 LINE L1 3889 4086 -2060 361 222 48 121 chr4 141081423 141081552 -61246795 - L1M4 LINE L1 -2232 3914 3810 255 103 0 0 chr4 141081552 141081591 -61246756 + (TG)n Simple_repeat Simple_repeat 2 40 0 361 222 48 121 chr4 141081591 141081709 -61246638 - L1M4 LINE L1 -2336 3810 3685 3496 249 66 69 chr4 141081798 141082989 -61245358 + L1MC2 LINE L1 4098 5354 -810 2385 53 0 0 chr4 141082989 141083309 -61245038 - AluY SINE Alu 0 320 1 3496 249 66 69 chr4 141083309 141084100 -61244247 + L1MC2 LINE L1 5354 6146 -18 27 49 0 0 chr4 141084958 141084999 -61243348 + AT_rich Low_complexity Low_complexity 1 41 0 226 291 64 55 chr4 141085337 141085447 -61242900 - MIR SINE MIR -30 232 122 279 0 0 0 chr4 141085760 141085791 -61242556 + (CA)n Simple_repeat Simple_repeat 2 32 0 204 305 107 51 chr4 141085976 141086153 -61242194 - L2 LINE L2 -775 2539 2353 4939 149 17 20 chr4 141086348 141087238 -61241109 + L1P3 LINE L1 897 1763 -4688 513 163 0 0 chr4 141087362 141087454 -61240893 + C-rich Low_complexity Low_complexity 5 96 0 248 231 0 19 chr4 141087456 141087508 -61240839 + CT-rich Low_complexity Low_complexity 3 53 0 1204 230 30 7 chr4 141087510 141087814 -61240533 - L1MA9 LINE L1 -43 6269 5959 453 289 122 44 chr4 141087815 141087995 -61240352 + L2 LINE L2 2623 2816 -498 794 277 111 28 chr4 141088592 141089015 -61239332 + LTR40c LTR ERVL 4 461 -4 27 62 0 0 chr4 141089712 141089760 -61238587 + AT_rich Low_complexity Low_complexity 1 48 0 2468 193 21 59 chr4 141091204 141091780 -61236567 - MLT2B3 LTR ERVL 0 554 1 490 114 13 0 chr4 141092588 141092667 -61235680 - MADE1 DNA Mariner 0 80 1 3909 162 12 51 chr4 141093090 141093837 -61234510 - MER72 LTR ERV1 -4 718 1 25 51 0 0 chr4 141094218 141094257 -61234090 + AT_rich Low_complexity Low_complexity 1 39 0 204 125 0 0 chr4 141095010 141095042 -61233305 + (A)n Simple_repeat Simple_repeat 1 32 0 462 212 20 0 chr4 141095879 141095978 -61232369 + L1PA12 LINE L1 6052 6152 -16 213 175 0 0 chr4 141095981 141096021 -61232326 + (TA)n Simple_repeat Simple_repeat 1 40 0 32 26 0 0 chr4 141096417 141096456 -61231891 + AT_rich Low_complexity Low_complexity 1 39 0 263 154 242 22 chr4 141096812 141096903 -61231444 + MER104 DNA Tc2 1 111 -69 2000 138 7 3 chr4 141097063 141097368 -61230979 - AluSx SINE Alu -6 306 1 333 68 0 0 chr4 141098407 141098451 -61229896 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 569 245 5 76 chr4 141098451 141098635 -61229712 - FAM SINE Alu -7 42 1 21 0 0 0 chr4 141098761 141098782 -61229565 + AT_rich Low_complexity Low_complexity 1 21 0 4929 50 17 0 chr4 141098911 141099550 -61228797 + L1P LINE L1 4584 5233 -913 746 170 50 19 chr4 141099654 141099813 -61228534 + MSTB1 LTR MaLR 269 432 0 2021 144 0 3 chr4 141099889 141100194 -61228153 - AluSx SINE Alu -8 304 1 27 29 0 0 chr4 141100826 141100860 -61227487 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr4 141101758 141101789 -61226558 + AT_rich Low_complexity Low_complexity 1 31 0 440 168 43 0 chr4 141103920 141104030 -61224317 + MER61E LTR ERV1 1 118 -484 256 289 13 0 chr4 141104132 141104208 -61224139 + LTR28 LTR ERV1 147 223 -797 250 254 134 0 chr4 141104201 141104268 -61224079 + MER51A LTR ERV1 208 283 -351 * 551 247 42 41 chr4 141104290 141104564 -61223783 + MER61D LTR ERV1 209 486 -15 207 293 20 40 chr4 141105524 141105623 -61222724 - MER5B DNA MER1_type -80 98 2 755 249 35 35 chr4 141106128 141106357 -61221990 + MIR SINE MIR 7 235 -27 182 118 29 0 chr4 141106379 141106413 -61221934 + (TTA)n Simple_repeat Simple_repeat 1 35 0 333 111 238 0 chr4 141107128 141107191 -61221156 - MADE1 DNA Mariner 0 80 3 816 210 0 0 chr4 141107285 141107428 -61220919 + FRAM SINE Alu 1 143 -33 202 56 56 0 chr4 141107429 141107465 -61220882 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 236 143 0 0 chr4 141107601 141107636 -61220711 + LTR67 LTR ERVL 521 555 -2 3230 247 35 93 chr4 141107775 141107973 -61220374 - L1P LINE L1 -1538 4608 4400 276 30 0 0 chr4 141107973 141108006 -61220341 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 3230 247 35 93 chr4 141108006 141108111 -61220236 - L1P LINE L1 -1746 4400 4290 2299 87 0 13 chr4 141108111 141108423 -61219924 + AluY SINE Alu 1 308 -3 3230 247 35 93 chr4 141108423 141109444 -61218903 - L1P LINE L1 -1856 4290 3361 5419 113 5 10 chr4 141109446 141110273 -61218074 + L1PB1 LINE L1 5329 6151 0 329 67 41 0 chr4 141110323 141110382 -61217965 - L1M LINE L1 -753 5401 5347 252 143 0 0 chr4 141110442 141110484 -61217863 + (TA)n Simple_repeat Simple_repeat 1 42 0 790 321 112 53 chr4 141110761 141111808 -61216539 + L2 LINE L2 2180 3301 -12 441 298 119 57 chr4 141211980 141212316 -61116031 + L1MDa LINE L1 1471 1827 -4713 1434 181 30 50 chr4 141212333 141212631 -61115716 - MSTB LTR MaLR 0 426 135 1103 142 76 24 chr4 141212643 141212854 -61115493 - THE1C LTR MaLR 0 375 154 42429 36 24 1 chr4 141212854 141218882 -61109465 + L1PA2 LINE L1 1 6165 0 826 172 51 13 chr4 141218882 141219039 -61109308 - THE1C LTR MaLR -211 164 2 3952 145 2 7 chr4 141219080 141219680 -61108667 - THE1C-int LTR MaLR -133 1447 851 6443 71 5 45 chr4 141219680 141221377 -61106970 - L1PA2 LINE L1 0 6155 4455 1709 129 49 5 chr4 141221377 141221794 -61106553 - THE1C-int LTR MaLR -1217 363 1 1742 146 89 17 chr4 141221794 141222144 -61106203 - THE1C LTR MaLR 0 375 1 795 151 0 0 chr4 141222145 141222264 -61106083 - MSTB LTR MaLR -307 119 1 21 57 0 0 chr4 141222347 141222382 -61105965 + AT_rich Low_complexity Low_complexity 1 35 0 1578 330 24 38 chr4 141222405 141223145 -61105202 + L1M4b LINE L1 -164 565 -5981 1044 253 120 57 chr4 141223675 141224763 -61103584 + L1M4b LINE L1 877 2110 -4536 22 35 0 0 chr4 141225020 141225049 -61103298 + AT_rich Low_complexity Low_complexity 1 29 0 314 234 59 86 chr4 141225106 141225382 -61102965 + L1M4b LINE L1 2310 2466 -4178 522 143 0 0 chr4 141225496 141225587 -61102760 + (GGA)n Simple_repeat Simple_repeat 3 93 0 884 300 58 34 chr4 141225692 141226245 -61102102 - L1ME LINE L1 -5239 831 266 3295 92 13 0 chr4 141226606 141227053 -61101294 + MLT2A2 LTR ERVL 1 453 0 23 33 0 0 chr4 141227076 141227106 -61101241 + AT_rich Low_complexity Low_complexity 1 30 0 1492 248 28 17 chr4 141227306 141227766 -61100581 - MLT1C LTR MaLR -2 465 1 3084 172 17 0 chr4 141227972 141228558 -61099789 + L1MA4 LINE L1 5700 6295 -5 39 38 0 0 chr4 141230049 141230102 -61098245 + AT_rich Low_complexity Low_complexity 1 53 0 35 41 0 0 chr4 141230515 141230564 -61097783 + AT_rich Low_complexity Low_complexity 1 49 0 798 307 68 31 chr4 141231092 141231418 -61096929 + LTR16A LTR ERVL 112 449 -1 22 0 0 0 chr4 141231529 141231551 -61096796 + AT_rich Low_complexity Low_complexity 1 22 0 2037 323 56 18 chr4 141231854 141232783 -61095564 + HERV16 LTR ERVL 494 1457 -3539 854 342 40 40 chr4 141232930 141233360 -61094987 + HERV16 LTR ERVL 1801 2230 -2766 854 237 31 10 chr4 141233425 141233619 -61094728 + MER70B LTR ERVL 279 476 -102 253 270 0 16 chr4 141233646 141233709 -61094638 + HERV16 LTR ERVL 3030 3091 -1905 998 269 33 27 chr4 141233808 141234142 -61094205 - MLT1A1 LTR MaLR 0 365 30 274 91 0 23 chr4 141234142 141234186 -61094161 - L1PA10 LINE L1 -7 6161 6119 600 331 73 60 chr4 141234247 141235082 -61093265 + HERV16 LTR ERVL 3137 3792 -1204 314 286 14 50 chr4 141235384 141235524 -61092823 + HERV16 LTR ERVL 4888 5022 -742 865 268 23 83 chr4 141236017 141236402 -61091945 + LTR16A LTR ERVL 89 450 0 280 103 35 0 chr4 141237114 141237172 -61091175 + (TG)n Simple_repeat Simple_repeat 2 61 0 21 112 0 0 chr4 141237195 141237293 -61091054 + AT_rich Low_complexity Low_complexity 1 98 0 2354 78 0 0 chr4 141237460 141237755 -61090592 + AluY SINE Alu 1 295 -16 447 66 0 0 chr4 141237755 141237937 -61090410 + AluYb8 SINE Alu 1 477 0 519 41 103 0 chr4 141238215 141238360 -61089987 + (TA)n Simple_repeat Simple_repeat 1 160 0 1341 148 8 4 chr4 141239372 141239616 -61088731 - L1MA4A LINE L1 0 7005 6761 1015 99 8 0 chr4 141239628 141239759 -61088588 - AluY SINE Alu -179 132 1 12432 205 50 47 chr4 141239759 141242241 -61086106 - L1MA4A LINE L1 -230 6775 4303 2571 36 3 0 chr4 141242241 141242546 -61085801 + AluY SINE Alu 1 306 -5 12432 205 50 47 chr4 141242546 141246801 -61081546 - L1MA4A LINE L1 -2702 4303 13 21 0 0 0 chr4 141246869 141246890 -61081457 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 141248952 141248982 -61079365 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr4 141250788 141250814 -61077533 + AT_rich Low_complexity Low_complexity 1 26 0 201 366 24 32 chr4 141250998 141251121 -61077226 - L3 LINE CR1 -765 812 691 296 130 0 0 chr4 141251572 141251618 -61076729 + tRNA-Gln-CAG tRNA tRNA 1 46 -29 1113 296 75 38 chr4 141253195 141253716 -61074631 + MLT1E2 LTR MaLR 87 626 0 810 96 0 0 chr4 141255164 141255268 -61073079 + AluY SINE Alu 1 104 -207 331 191 11 11 chr4 141255368 141255457 -61072890 + GA-rich Low_complexity Low_complexity 5 93 0 275 171 40 66 chr4 141255459 141255535 -61072812 + L1MDa LINE L1 1859 1932 -4608 1588 173 40 4 chr4 141255556 141255833 -61072514 - AluSx SINE Alu -25 287 1 507 34 0 0 chr4 141255925 141255984 -61072363 - L1P2 LINE L1 -482 5672 5614 589 62 0 0 chr4 141255984 141256060 -61072287 + L1PA2 LINE L1 6074 6153 -2 1004 258 5 0 chr4 141256728 141256937 -61071410 + MER77 LTR ERV1 1 210 -395 * 2105 241 15 4 chr4 141256921 141257378 -61070969 + MER77 LTR ERV1 144 605 0 23 33 0 0 chr4 141257436 141257466 -61070881 + AT_rich Low_complexity Low_complexity 1 30 0 996 293 44 29 chr4 141257556 141258103 -61070244 + L1M4 LINE L1 1128 1682 -4702 1320 185 37 30 chr4 141258143 141258413 -61069934 + AluJo SINE Alu 23 294 -18 1704 179 0 3 chr4 141258915 141259205 -61069142 + AluJo SINE Alu 1 289 -23 24 0 0 0 chr4 141259481 141259505 -61068842 + AT_rich Low_complexity Low_complexity 1 24 0 2406 175 16 9 chr4 141259748 141260193 -61068154 - MER83 LTR ERV1 0 448 1 1607 159 91 29 chr4 141260357 141260708 -61067639 + THE1C LTR MaLR 1 373 -2 8740 146 31 33 chr4 141260714 141262294 -61066053 + THE1C-int LTR MaLR 4 1580 0 1615 150 90 31 chr4 141262294 141262648 -61065699 + THE1C LTR MaLR 1 375 0 7078 54 14 0 chr4 141262776 141263819 -61064528 - L1PA7 LINE L1 -1 6153 5106 229 283 0 0 chr4 141264294 141264354 -61063993 + (TATATG)n Simple_repeat Simple_repeat 1 60 0 23 0 0 0 chr4 141265356 141265379 -61062968 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 141266906 141266927 -61061420 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 141266997 141267019 -61061328 + AT_rich Low_complexity Low_complexity 1 22 0 31 88 0 0 chr4 141268027 141268107 -61060240 + AT_rich Low_complexity Low_complexity 1 80 0 241 250 0 0 chr4 141268575 141268631 -61059716 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 4881 132 82 16 chr4 141268715 141269247 -61059100 + Tigger3b DNA MER2_type 294 908 -2120 236 30 30 0 chr4 141269247 141269280 -61059067 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 4881 132 82 16 chr4 141269280 141269627 -61058720 + Tigger3b DNA MER2_type 908 1231 0 935 245 119 75 chr4 141269656 141270167 -61058180 + L1M4 LINE L1 2874 3422 -2960 213 39 0 0 chr4 141270167 141270193 -61058154 + (TAA)n Simple_repeat Simple_repeat 2 27 0 935 245 119 75 chr4 141270193 141270338 -61058009 + L1M4 LINE L1 3422 3559 -2823 819 273 74 42 chr4 141270374 141270807 -61057540 + L1M4 LINE L1 3654 4100 -2282 670 321 49 38 chr4 141270817 141271184 -61057163 + LTR16B LTR ERVL 1 371 -93 2160 133 0 0 chr4 141271190 141271491 -61056856 - AluSq SINE Alu -12 301 1 322 286 87 48 chr4 141271560 141271791 -61056556 + HERV16 LTR ERVL 3 242 -4754 498 262 26 73 chr4 141272103 141272373 -61055974 + HERV16 LTR ERVL 3468 3690 -1306 327 274 29 0 chr4 141272512 141272614 -61055733 + LTR16B LTR ERVL 358 462 -2 1241 253 72 41 chr4 141272616 141273102 -61055245 + MLT1D LTR MaLR 5 505 0 846 248 117 13 chr4 141273656 141274200 -61054147 - MLT1D LTR MaLR 0 505 1 393 297 123 39 chr4 141274736 141275069 -61053278 - HAL1b LINE L1 -14 1334 974 21 57 0 0 chr4 141276146 141276181 -61052166 + AT_rich Low_complexity Low_complexity 1 35 0 43 47 0 0 chr4 141276564 141276628 -61051719 + AT_rich Low_complexity Low_complexity 1 64 0 2166 115 0 3 chr4 141276664 141276960 -61051387 + AluSc SINE Alu 1 295 -14 899 248 20 16 chr4 141277099 141277349 -61050998 + L1MCa LINE L1 29 279 -6147 * 1998 261 36 22 chr4 141277348 141278077 -61050270 + L1MCa LINE L1 2615 3353 -3073 217 173 53 27 chr4 141278140 141278215 -61050132 + (TATAA)n Simple_repeat Simple_repeat 2 78 0 33 25 0 0 chr4 141278372 141278412 -61049935 + AT_rich Low_complexity Low_complexity 1 40 0 332 229 146 0 chr4 141278728 141278872 -61049475 + MER114 LTR ERV 356 520 -128 3838 165 8 25 chr4 141278883 141279615 -61048732 - L1MC1 LINE L1 -2 6331 5612 23 54 0 0 chr4 141280626 141280663 -61047684 + AT_rich Low_complexity Low_complexity 1 37 0 796 257 44 0 chr4 141281868 141282074 -61046273 + MER20B DNA MER1_type 1 215 -4 25 31 0 0 chr4 141282223 141282255 -61046092 + AT_rich Low_complexity Low_complexity 1 32 0 408 270 20 23 chr4 141282445 141282621 -61045726 - MIR SINE MIR -53 209 36 30 0 0 0 chr4 141283037 141283067 -61045280 + AT_rich Low_complexity Low_complexity 1 30 0 1414 204 0 29 chr4 141283526 141283852 -61044495 - AluJb SINE Alu 0 331 14 482 279 67 39 chr4 141284008 141284187 -61044160 + MIR SINE MIR 78 261 -1 23 0 0 0 chr4 141284856 141284879 -61043468 + AT_rich Low_complexity Low_complexity 1 23 0 5341 129 32 26 chr4 141285355 141286251 -61042096 + MER49 LTR ERV1 1 902 -21 374 257 7 52 chr4 141286672 141286808 -61041539 + L1MCc LINE L1 21 150 -6273 720 90 0 25 chr4 141286893 141287015 -61041332 + (TTCCC)n Simple_repeat Simple_repeat 4 122 0 1897 233 23 47 chr4 141288593 141289125 -61039222 - MLT1F LTR MaLR -19 523 5 1259 193 55 29 chr4 141289739 141290014 -61038333 + AluJo SINE Alu 1 282 -30 24 53 0 0 chr4 141290014 141290052 -61038295 + AT_rich Low_complexity Low_complexity 1 38 0 1471 273 81 10 chr4 141290632 141291211 -61037136 + MER20B DNA MER1_type 161 780 -3 989 317 41 6 chr4 141293004 141293370 -61034977 - MER77 LTR ERV1 0 605 227 1432 196 61 25 chr4 141293419 141293781 -61034566 - THE1C LTR MaLR 0 375 1 7343 150 52 36 chr4 141293781 141295116 -61033231 - MSTA-int LTR MaLR 0 1580 224 2740 132 14 2 chr4 141295813 141296236 -61032111 - MSTA LTR MaLR 0 428 1 269 244 0 61 chr4 141296753 141296835 -61031512 + L2 LINE L2 3237 3313 0 24 0 0 0 chr4 141297249 141297273 -61031074 + AT_rich Low_complexity Low_complexity 1 24 0 326 278 149 47 chr4 141297330 141297585 -61030762 - L1ME LINE L1 -318 5803 5523 234 0 0 0 chr4 141297890 141297916 -61030431 + (TG)n Simple_repeat Simple_repeat 1 26 0 360 302 137 0 chr4 141298973 141299155 -61029192 - L1ME LINE L1 -2173 3973 3767 950 279 80 49 chr4 141299220 141299647 -61028700 - LTR16B LTR ERVL 0 464 25 475 219 44 0 chr4 141300916 141301030 -61027317 - L1MB1 LINE L1 -88 6080 5962 1439 210 39 9 chr4 141301117 141301451 -61026896 - L1MB1 LINE L1 -213 5955 5612 * 12659 228 29 28 chr4 141301446 141301512 -61026835 - L1MA8 LINE L1 -310 7400 7336 2534 118 62 5 chr4 141301512 141301917 -61026430 - MSTA LTR MaLR 0 428 1 12659 228 29 28 chr4 141301917 141307202 -61021145 - L1MA8 LINE L1 -374 7336 2061 260 152 0 0 chr4 141307219 141307265 -61021082 - L1MB1 LINE L1 -730 5604 5559 904 275 30 11 chr4 141307346 141307615 -61020732 + LTR38 LTR ERV1 94 367 -189 256 291 13 0 chr4 141307625 141307704 -61020643 + MER87 LTR ERV1 395 474 -67 353 160 23 0 chr4 141307723 141307806 -61020541 - L1M3 LINE L1 -587 5593 5508 244 295 164 0 chr4 141308218 141308340 -61020007 - L2 LINE L2 -1 3312 3171 309 336 8 41 chr4 141310990 141311112 -61017235 + MER5B DNA MER1_type 58 175 -3 31 26 0 0 chr4 141312755 141312793 -61015554 + AT_rich Low_complexity Low_complexity 1 38 0 895 271 51 68 chr4 141312977 141313331 -61015016 + L1PBb LINE L1 74 421 -6428 354 291 67 159 chr4 141313356 141313847 -61014500 + L1PBb LINE L1 372 817 -6032 469 324 28 76 chr4 141314032 141314322 -61014025 + L1PBb LINE L1 793 1068 -5781 3074 265 77 16 chr4 141314492 141315584 -61012763 + L1PBb LINE L1 999 2254 -4594 650 53 2 19 chr4 141315581 141315685 -61012662 - L1PA5 LINE L1 -291 5872 5776 * 2418 41 0 0 chr4 141315685 141315978 -61012369 + L1PA5 LINE L1 5861 6153 -1 1584 237 34 38 chr4 141316180 141316649 -61011698 + MLT1C LTR MaLR 1 467 0 22 0 0 0 chr4 141316681 141316703 -61011644 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr4 141316727 141316761 -61011586 + AT_rich Low_complexity Low_complexity 1 34 0 1826 97 56 8 chr4 141317266 141317533 -61010814 + AluSx SINE Alu 1 280 -32 261 0 0 0 chr4 141317543 141317572 -61010775 + (CAA)n Simple_repeat Simple_repeat 2 30 0 222 237 68 0 chr4 141319091 141319150 -61009197 - MIR SINE MIR 0 262 200 21 57 0 0 chr4 141319155 141319190 -61009157 + AT_rich Low_complexity Low_complexity 1 35 0 2162 308 97 40 chr4 141319370 141320240 -61008107 + L2 LINE L2 1256 2232 -1082 2191 112 0 3 chr4 141320240 141320536 -61007811 - AluSc SINE Alu -14 295 1 2162 308 97 40 chr4 141320536 141321028 -61007319 + L2 LINE L2 2232 2695 -619 321 332 82 34 chr4 141321032 141321300 -61007047 + L2 LINE L2 3033 3313 0 194 94 0 94 chr4 141321411 141321475 -61006872 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 297 246 181 53 chr4 141321750 141321921 -61006426 + L2 LINE L2 3021 3213 -100 21 36 0 0 chr4 141322918 141322946 -61005401 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr4 141323120 141323159 -61005188 + AT_rich Low_complexity Low_complexity 1 39 0 667 177 46 10 chr4 141324563 141324593 -61003754 - MLT2B3 LTR ERVL -8 546 519 649 63 21 0 chr4 141324593 141324688 -61003659 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 667 177 46 10 chr4 141324688 141324803 -61003544 - MLT2B3 LTR ERVL -35 519 354 3441 196 40 5 chr4 141325924 141326668 -61001679 + L1MA5 LINE L1 5530 6299 -1 1122 276 109 60 chr4 141326682 141327368 -61000979 + HAL1 LINE L1 342 1061 -1446 1924 96 0 38 chr4 141327883 141328222 -61000125 - AluY SINE Alu 0 329 2 467 351 63 24 chr4 141328548 141328961 -60999386 - L1ME LINE L1 -3507 2573 2145 1081 198 279 9 chr4 141329006 141329325 -60999022 + MER47B DNA MER2_type 1 405 -13 24 53 0 0 chr4 141329605 141329643 -60998704 + AT_rich Low_complexity Low_complexity 1 38 0 415 248 60 54 chr4 141329678 141329827 -60998520 + L2 LINE L2 1271 1420 -1894 1283 241 84 27 chr4 141329888 141330411 -60997936 - L1M4 LINE L1 -1642 4504 3952 2373 69 3 3 chr4 141330452 141330757 -60997590 - AluY SINE Alu -6 305 1 351 330 10 45 chr4 141330810 141331010 -60997337 - L1ME LINE L1 -5096 974 782 1095 226 110 39 chr4 141331084 141331447 -60996900 - MER76 LTR ERV -299 389 1 21 36 0 0 chr4 141332358 141332386 -60995961 + AT_rich Low_complexity Low_complexity 1 28 0 334 257 7 7 chr4 141332404 141332548 -60995799 + GA-rich Low_complexity Low_complexity 4 147 0 272 355 11 0 chr4 141332574 141332667 -60995680 - MLT2B3 LTR ERVL -264 364 271 * 3044 136 67 114 chr4 141332662 141333413 -60994934 - MER50 LTR ERV1 -19 715 1 2361 124 0 17 chr4 141333413 141333775 -60994572 - MER50-int LTR ERV1 -8 7197 6842 * 7744 148 74 32 chr4 141333755 141334316 -60994031 - MER50-int LTR ERV1 -985 6220 5684 7385 27 2 0 chr4 141334316 141335479 -60992868 - L1PA4 LINE L1 -1 6154 4988 7744 148 74 32 chr4 141335479 141336367 -60991980 - MER50-int LTR ERV1 -1521 5684 4711 1725 116 37 14 chr4 141336365 141336659 -60991688 - MER50-int LTR ERV1 -2337 3609 3309 * 4971 217 18 32 chr4 141336655 141337744 -60990603 - MER50-int LTR ERV1 -3348 3857 2784 3976 198 15 5 chr4 141337736 141339379 -60988968 - MER50-int LTR ERV1 -5355 1850 1 * 541 122 49 0 chr4 141339380 141339462 -60988885 - MER50 LTR ERV1 -23 711 626 385 283 38 0 chr4 141339674 141339780 -60988567 - MLT2E LTR ERVL -508 120 11 369 277 10 0 chr4 141339858 141339959 -60988388 - ERVL-E LTR ERVL -23 5741 5640 1654 185 24 0 chr4 141340052 141340339 -60988008 - AluJb SINE Alu -18 294 1 372 271 78 16 chr4 141340408 141340537 -60987810 - MERVL LTR ERVL -2148 3337 3217 255 243 57 14 chr4 141340858 141340928 -60987419 - MIR SINE MIR -93 169 97 21 36 0 0 chr4 141341882 141341910 -60986437 + AT_rich Low_complexity Low_complexity 1 28 0 200 247 0 12 chr4 141343027 141343108 -60985239 + GA-rich Low_complexity Low_complexity 2 81 0 292 282 34 20 chr4 141344059 141344201 -60984146 + MLT1E3 LTR MaLR 391 590 -34 371 281 19 91 chr4 141344756 141344966 -60983381 + MIR SINE MIR 66 260 -2 484 347 64 5 chr4 141348468 141348687 -60979660 + L3 LINE CR1 529 760 -817 325 257 9 0 chr4 141349214 141349319 -60979028 + (TA)n Simple_repeat Simple_repeat 2 107 0 255 297 84 13 chr4 141349947 141350102 -60978245 + L1M4 LINE L1 3339 3504 -2642 584 223 31 58 chr4 141350102 141350326 -60978021 + MER65A-int LTR ERV1 2303 2520 -2351 770 222 60 84 chr4 141350403 141351140 -60977207 + MER65A-int LTR ERV1 1541 3481 -3117 733 206 32 69 chr4 141351366 141351613 -60976734 + MER65A-int LTR ERV1 3493 3730 -2868 721 217 38 66 chr4 141351867 141352325 -60976022 + MER65A-int LTR ERV1 3789 4255 -2076 755 208 48 44 chr4 141352354 141352600 -60975747 + MER65A-int LTR ERV1 3632 3956 -980 2404 234 51 16 chr4 141352699 141353211 -60975136 + MER65A-int LTR ERV1 3604 4133 -738 1879 238 94 12 chr4 141353211 141353775 -60974572 + MER65A-int LTR ERV1 4238 4847 -24 1979 174 40 18 chr4 141353775 141354172 -60974175 + MER65A LTR ERV1 40 445 0 1645 242 42 16 chr4 141354179 141355086 -60973261 + L1M4 LINE L1 4804 5732 -442 720 187 0 0 chr4 141357129 141357263 -60971084 + MLT2C1 LTR ERVL 1 134 -263 2365 77 0 3 chr4 141357290 141357600 -60970747 + AluY SINE Alu 1 309 -2 1834 299 20 19 chr4 141358060 141358698 -60969649 + ERVL LTR ERVL 866 1504 -4260 582 236 109 29 chr4 141358710 141358884 -60969463 + MLT1A2 LTR MaLR 203 374 0 9646 246 65 20 chr4 141358886 141361343 -60967004 + ERVL LTR ERVL 3077 5653 -111 682 183 80 175 chr4 141361343 141361606 -60966741 - MER8 DNA MER2_type 0 239 2 9646 246 65 20 chr4 141361606 141361696 -60966651 + ERVL LTR ERVL 5653 5738 -26 23 54 0 0 chr4 141361775 141361812 -60966535 + AT_rich Low_complexity Low_complexity 1 37 0 295 237 40 52 chr4 141361950 141362120 -60966227 - L1M3d LINE L1 -4733 1317 950 429 20 0 0 chr4 141362678 141362728 -60965619 + (TG)n Simple_repeat Simple_repeat 1 50 0 1573 186 10 3 chr4 141363376 141363677 -60964670 + AluJb SINE Alu 9 311 -1 217 191 21 0 chr4 141363941 141363988 -60964359 + (TA)n Simple_repeat Simple_repeat 2 49 0 21 36 0 0 chr4 141364274 141364302 -60964045 + AT_rich Low_complexity Low_complexity 1 28 0 1589 191 3 25 chr4 141364646 141364965 -60963382 - AluJo SINE Alu 0 312 1 241 288 0 0 chr4 141365090 141365149 -60963198 + (TA)n Simple_repeat Simple_repeat 1 59 0 254 71 0 24 chr4 141365277 141365319 -60963028 + (GA)n Simple_repeat Simple_repeat 2 42 0 182 329 104 24 chr4 141365321 141365485 -60962862 - L2 LINE L2 -34 3279 3103 238 365 94 5 chr4 141365610 141365813 -60962534 - L2 LINE L2 -368 2946 2726 216 291 13 13 chr4 141365973 141366052 -60962295 + CT-rich Low_complexity Low_complexity 3 81 0 2241 106 0 3 chr4 141367159 141367462 -60960885 - AluSg SINE Alu -6 304 3 273 371 87 34 chr4 141367665 141367929 -60960418 + L2 LINE L2 2818 3095 -218 1089 252 73 15 chr4 141368111 141368440 -60959907 - L1MC4 LINE L1 -482 7560 7213 722 286 54 7 chr4 141368652 141368932 -60959415 - L1MC4 LINE L1 -857 7185 6893 297 314 52 10 chr4 141368957 141369118 -60959229 - L1MD3 LINE L1 -1252 6743 6609 1425 214 27 101 chr4 141369242 141369798 -60958549 - MER65B LTR ERV1 -7 524 10 716 286 50 13 chr4 141369801 141370119 -60958228 - L1MC4a LINE L1 -1318 6490 6161 304 343 75 21 chr4 141370139 141370309 -60958038 - HAL1 LINE L1 -768 1739 1547 2199 114 3 3 chr4 141370309 141370607 -60957740 + AluSg SINE Alu 1 298 -12 304 343 75 21 chr4 141370607 141370716 -60957631 - HAL1 LINE L1 -960 1547 1445 253 250 8 40 chr4 141371072 141371196 -60957151 + T-rich Low_complexity Low_complexity 6 125 0 240 111 0 0 chr4 141372021 141372057 -60956290 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 221 194 15 45 chr4 141372168 141372235 -60956112 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 37 23 0 0 chr4 141372428 141372472 -60955875 + AT_rich Low_complexity Low_complexity 1 44 0 288 303 34 0 chr4 141372856 141372945 -60955402 - L1MEd LINE L1 -5426 693 602 213 175 0 0 chr4 141373073 141373113 -60955234 + (TG)n Simple_repeat Simple_repeat 2 41 0 22 70 0 0 chr4 141374097 141374140 -60954207 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chr4 141376312 141376343 -60952004 + AT_rich Low_complexity Low_complexity 1 31 0 481 185 0 0 chr4 141378014 141378095 -60950252 - MER54A LTR ERVL -2 899 819 * 810 208 75 30 chr4 141378093 141378371 -60949976 - MER54A LTR ERVL -556 345 19 21 0 0 0 chr4 141378373 141378394 -60949953 + AT_rich Low_complexity Low_complexity 1 21 0 1784 180 84 28 chr4 141378616 141379297 -60949050 + L1MA4 LINE L1 1982 6384 -618 602 167 185 6 chr4 141379397 141379559 -60948788 + L1MA4 LINE L1 6806 6996 -6 1345 268 42 13 chr4 141379675 141380076 -60948271 + MLT1E2 LTR MaLR 198 450 -17 25 0 0 0 chr4 141380691 141380716 -60947631 + AT_rich Low_complexity Low_complexity 1 25 0 3967 168 21 4 chr4 141381983 141382705 -60945642 + MER50 LTR ERV1 1 734 0 2071 105 11 3 chr4 141382734 141383019 -60945328 + AluSq SINE Alu 9 295 -18 2463 67 160 5 chr4 141383138 141383526 -60944821 - LTR7 LTR ERV1 -2 448 1 395 333 79 20 chr4 141383535 141383992 -60944355 + L1MC4a LINE L1 5415 5898 -1910 28 29 0 0 chr4 141384410 141384445 -60943902 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 141384786 141384808 -60943539 + AT_rich Low_complexity Low_complexity 1 22 0 2205 112 0 3 chr4 141385766 141386069 -60942278 + AluY SINE Alu 2 303 -8 568 302 56 36 chr4 141386082 141386334 -60942013 - MIR SINE MIR 0 262 6 2618 93 58 19 chr4 141386365 141386796 -60941551 - LTR7 LTR ERV1 -2 448 1 23 0 0 0 chr4 141386798 141386821 -60941526 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 141387113 141387134 -60941213 + AT_rich Low_complexity Low_complexity 1 21 0 4061 234 24 57 chr4 141387685 141389034 -60939313 - L1MB3 LINE L1 -3 6180 4787 2073 136 0 3 chr4 141389034 141389335 -60939012 + AluSx SINE Alu 1 300 -12 4061 234 24 57 chr4 141389335 141389649 -60938698 - L1MB3 LINE L1 -1396 4787 4464 194 61 0 30 chr4 141389649 141389682 -60938665 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 4061 234 24 57 chr4 141389682 141390402 -60937945 - L1MB3 LINE L1 -1719 4464 3868 23 54 0 0 chr4 141391270 141391307 -60937040 + AT_rich Low_complexity Low_complexity 1 37 0 225 0 0 0 chr4 141391310 141391335 -60937012 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1370 219 11 7 chr4 141391337 141391616 -60936731 - AluJo SINE Alu -32 280 1 188 241 37 19 chr4 141392212 141392266 -60936081 + L2 LINE L2 3216 3270 -2 409 266 63 23 chr4 141392296 141392502 -60935845 + MSTD LTR MaLR 1 278 -118 1408 141 9 0 chr4 141392518 141392745 -60935602 - MER51C LTR ERV1 0 640 412 9515 24 0 0 chr4 141392745 141394643 -60933704 - L1PA2 LINE L1 0 6155 4258 2449 18 7 0 chr4 141394643 141394926 -60933421 + L1PA2 LINE L1 3969 4253 -1893 2312 101 47 14 chr4 141394937 141395338 -60933009 - MER51C LTR ERV1 -245 395 1 420 127 0 0 chr4 141395491 141395554 -60932793 + MSTD LTR MaLR 334 396 0 236 353 82 0 chr4 141395649 141395771 -60932576 - MIR3 SINE MIR -47 161 30 1483 341 36 20 chr4 141395837 141396494 -60931853 + L1M4b LINE L1 264 931 -5928 363 375 68 28 chr4 141397379 141397630 -60930717 + MIR SINE MIR 2 262 0 539 238 132 21 chr4 141398482 141398671 -60929676 + MER63A DNA MER1_type 1 210 0 294 327 27 18 chr4 141399819 141399929 -60928418 - L2 LINE L2 -11 3302 3192 476 295 63 100 chr4 141400415 141400906 -60927441 - L2 LINE L2 -1 3312 2840 745 347 169 2 chr4 141401252 141401802 -60926545 - L2 LINE L2 -545 2769 2128 407 169 13 13 chr4 141401810 141401887 -60926460 + MLT2B2 LTR ERVL 17 93 -422 2220 197 17 7 chr4 141401954 141402365 -60925982 + MLT2B2 LTR ERVL 100 514 -1 368 296 186 56 chr4 141402365 141402844 -60925503 - L2 LINE L2 -1186 2128 1588 197 318 33 40 chr4 141402857 141402981 -60925366 - L2 LINE L2 -2193 1121 997 743 146 16 16 chr4 141402981 141403104 -60925243 + FLAM_C SINE Alu 2 124 -9 197 318 33 40 chr4 141403104 141403130 -60925217 - L2 LINE L2 -2317 997 972 216 67 0 0 chr4 141404807 141404837 -60923510 + (CA)n Simple_repeat Simple_repeat 2 31 0 541 251 141 113 chr4 141405270 141405625 -60922722 + MLT1A1 LTR MaLR 1 365 0 4190 218 114 64 chr4 141405803 141407293 -60921054 - L1MC3 LINE L1 -584 7270 5707 954 271 50 52 chr4 141407293 141407891 -60920456 - L1MC3 LINE L1 -2498 3717 3121 33 43 0 0 chr4 141408851 141408898 -60919449 + AT_rich Low_complexity Low_complexity 1 47 0 30 45 0 0 chr4 141408922 141408966 -60919381 + AT_rich Low_complexity Low_complexity 1 44 0 270 56 0 0 chr4 141410010 141410046 -60918301 + (TA)n Simple_repeat Simple_repeat 1 36 0 234 0 0 0 chr4 141410741 141410767 -60917580 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 7179 89 11 2 chr4 141411178 141412965 -60915382 - L1PA7 LINE L1 -2 6152 4349 3113 92 0 0 chr4 141412965 141413389 -60914958 + L1PA7 LINE L1 3916 4339 -1807 232 254 0 0 chr4 141413830 141413885 -60914462 + T-rich Low_complexity Low_complexity 5 59 0 183 42 0 0 chr4 141414022 141414046 -60914301 + (A)n Simple_repeat Simple_repeat 1 24 0 1009 154 82 23 chr4 141414503 141414723 -60913624 - L1MA8 LINE L1 -6 6285 6053 387 0 0 0 chr4 141415037 141415080 -60913267 + (TG)n Simple_repeat Simple_repeat 2 44 0 39363 76 17 0 chr4 141415080 141421121 -60907226 - L1PA5 LINE L1 -13 6141 1 37 39 0 0 chr4 141421161 141421212 -60907135 + AT_rich Low_complexity Low_complexity 1 51 0 409 267 0 10 chr4 141421584 141421685 -60906662 - MIR SINE MIR -47 215 116 953 250 4 30 chr4 141422319 141422555 -60905792 + MLT1D LTR MaLR 276 505 0 294 328 76 11 chr4 141422751 141423216 -60905131 - L1MC3 LINE L1 -4579 1817 1313 30 83 0 0 chr4 141423638 141423710 -60904637 + AT_rich Low_complexity Low_complexity 1 72 0 1415 238 12 15 chr4 141424582 141424922 -60903425 + MER58B DNA MER1_type 2 340 -1 18867 174 28 15 chr4 141425068 141432680 -60895667 - L1MA1 LINE L1 0 7721 12 1975 160 36 17 chr4 141433105 141433467 -60894880 + LTR57 LTR ERVL 1 369 -42 775 338 86 43 chr4 141434671 141435582 -60892765 + HAL1 LINE L1 8 957 -1550 2504 247 64 20 chr4 141435667 141436543 -60891804 + Looper DNA T2_type 55 968 -590 311 200 70 26 chr4 141436581 141436696 -60891651 + Looper DNA T2_type 1413 1532 -26 1011 299 67 49 chr4 141436722 141437572 -60890775 + HAL1 LINE L1 990 1854 -653 224 236 9 0 chr4 141437971 141438081 -60890266 + (TA)n Simple_repeat Simple_repeat 1 111 0 452 291 22 28 chr4 141438525 141438707 -60889640 - Charlie8 DNA MER1_type -2154 263 83 2453 68 0 0 chr4 141439304 141439611 -60888736 - AluY SINE Alu -4 307 1 21 36 0 0 chr4 141439675 141439703 -60888644 + AT_rich Low_complexity Low_complexity 1 28 0 343 311 49 0 chr4 141439764 141439886 -60888461 + L2 LINE L2 3186 3313 0 23 33 0 0 chr4 141442135 141442165 -60886182 + AT_rich Low_complexity Low_complexity 1 30 0 221 143 0 41 chr4 141442304 141442353 -60885994 + (CATA)n Simple_repeat Simple_repeat 2 48 0 192 217 0 100 chr4 141442828 141442888 -60885459 + MER5A DNA MER1_type 136 189 0 259 177 0 51 chr4 141443004 141443083 -60885264 + GA-rich Low_complexity Low_complexity 1 75 0 393 346 84 19 chr4 141443132 141443346 -60885001 + MIR SINE MIR 7 234 -28 2005 161 42 11 chr4 141443477 141443837 -60884510 + THE1C LTR MaLR 1 371 -4 279 0 0 0 chr4 141444070 141444101 -60884246 + (CA)n Simple_repeat Simple_repeat 2 32 0 182 326 79 56 chr4 141444233 141444322 -60884025 - MIR SINE MIR -102 106 16 35 41 0 0 chr4 141444338 141444387 -60883960 + AT_rich Low_complexity Low_complexity 1 49 0 964 282 107 0 chr4 141444894 141445174 -60883173 - MLT1E2 LTR MaLR 0 626 317 379 320 65 19 chr4 141445174 141445472 -60882875 - L2 LINE L2 -76 3237 2857 2252 140 3 24 chr4 141447106 141447478 -60880869 - THE1B LTR MaLR 0 364 1 2175 252 19 27 chr4 141449231 141450095 -60878252 + L1PA16 LINE L1 832 1658 -4545 * 4418 265 28 11 chr4 141450089 141451529 -60876818 + L1ME1 LINE L1 2199 3662 -2484 5183 187 30 18 chr4 141451539 141453583 -60874764 + L1PA16 LINE L1 4133 6186 -37 1655 153 35 7 chr4 141453866 141454153 -60874194 - AluJb SINE Alu -15 297 3 2260 94 0 0 chr4 141455811 141456108 -60872239 - AluY SINE Alu -14 297 1 22 35 0 0 chr4 141456414 141456443 -60871904 + AT_rich Low_complexity Low_complexity 1 29 0 1675 260 67 34 chr4 141457836 141459003 -60869344 + L1ME1 LINE L1 4856 6046 -120 2367 165 60 25 chr4 141459143 141459623 -60868724 + LOR1a LTR ERV1 1 497 0 2384 168 17 0 chr4 141459623 141460034 -60868313 + LOR1a-int LTR ERV1 1 418 -7702 16103 160 60 13 chr4 141460035 141463139 -60865208 + LOR1a-int LTR ERV1 536 3784 -4336 456 200 10 0 chr4 141463332 141463432 -60864915 + LOR1a-int LTR ERV1 4027 4127 -2204 1895 135 0 0 chr4 141463441 141463715 -60864632 + LOR1a-int LTR ERV1 3777 4050 -4070 858 186 180 6 chr4 141463877 141464060 -60864287 + LOR1a-int LTR ERV1 6829 7043 -1077 230 258 16 0 chr4 141464060 141464122 -60864225 + MER72 LTR ERV1 10 72 -650 3276 165 34 17 chr4 141464126 141464972 -60863375 + LOR1a-int LTR ERV1 7172 8113 -7 2120 177 60 33 chr4 141464979 141465460 -60862887 + LOR1a LTR ERV1 4 497 0 1983 135 143 8 chr4 141465510 141465887 -60862460 - MSTA LTR MaLR 0 428 1 24 32 0 0 chr4 141466510 141466541 -60861806 + AT_rich Low_complexity Low_complexity 1 31 0 263 310 131 21 chr4 141466702 141466847 -60861500 + MIR SINE MIR 40 200 -62 30 69 0 0 chr4 141467063 141467121 -60861226 + AT_rich Low_complexity Low_complexity 1 58 0 25 65 0 0 chr4 141467809 141467855 -60860492 + AT_rich Low_complexity Low_complexity 1 46 0 262 276 0 11 chr4 141468135 141468222 -60860125 + L1MCc LINE L1 73 158 -6265 1370 277 85 34 chr4 141468746 141471131 -60857216 + L1MCc LINE L1 847 3522 -3419 3264 244 67 60 chr4 141471136 141472368 -60855979 + MER31-int LTR ERV1 3231 4470 -466 374 231 0 33 chr4 141472435 141472526 -60855821 + MER31-int LTR ERV1 5770 5857 -474 493 256 6 79 chr4 141472678 141472842 -60855505 + MER31-int LTR ERV1 4585 4736 -200 2039 130 3 7 chr4 141473030 141473337 -60855010 + AluY SINE Alu 3 308 -3 971 217 94 38 chr4 141473353 141473725 -60854622 - MLT1A1 LTR MaLR -2 363 36 186 43 0 0 chr4 141473928 141473951 -60854396 + (T)n Simple_repeat Simple_repeat 1 23 0 202 164 33 33 chr4 141474413 141474474 -60853873 + (TTTAA)n Simple_repeat Simple_repeat 3 63 0 461 294 56 25 chr4 141474535 141474732 -60853615 + MIR SINE MIR 59 261 -1 30 27 0 0 chr4 141475747 141475784 -60852563 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr4 141476166 141476197 -60852150 + AT_rich Low_complexity Low_complexity 1 31 0 835 211 5 5 chr4 141476489 141476679 -60851668 - L1P LINE L1 -1010 5136 4947 * 1365 145 18 4 chr4 141476672 141476954 -60851393 + L1PA16 LINE L1 5837 6157 -9 315 0 0 0 chr4 141477420 141477455 -60850892 + (TG)n Simple_repeat Simple_repeat 2 36 0 24 91 0 0 chr4 141477591 141477657 -60850690 + AT_rich Low_complexity Low_complexity 1 66 0 22 35 0 0 chr4 141479454 141479483 -60848864 + AT_rich Low_complexity Low_complexity 1 29 0 215 229 66 33 chr4 141479567 141479628 -60848719 + MIR SINE MIR 200 262 0 402 239 47 127 chr4 141480074 141480396 -60847951 + MLT1I LTR MaLR 95 390 -19 201 259 17 0 chr4 141480554 141480612 -60847735 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 21 0 0 0 chr4 141480766 141480787 -60847560 + AT_rich Low_complexity Low_complexity 1 21 0 430 288 67 48 chr4 141481536 141481743 -60846604 + HAL1b LINE L1 424 641 -707 1874 150 3 3 chr4 141481743 141482029 -60846318 + AluSx SINE Alu 1 286 -26 430 288 67 48 chr4 141482029 141482137 -60846210 + HAL1b LINE L1 641 745 -603 212 220 20 0 chr4 141482238 141482288 -60846059 + (TAA)n Simple_repeat Simple_repeat 3 53 0 278 250 12 0 chr4 141482331 141482411 -60845936 + MER53 DNA DNA 105 185 -4 407 167 13 0 chr4 141482862 141482940 -60845407 + L1MC1 LINE L1 6249 6327 -6 780 232 93 45 chr4 141482967 141483416 -60844931 - Charlie2 DNA MER1_type -221 2641 2171 245 312 108 0 chr4 141483441 141483598 -60844749 - Charlie2b DNA MER1_type -1540 1242 1069 867 306 125 14 chr4 141483612 141484131 -60844216 - Charlie2b DNA MER1_type -2258 604 28 2632 111 14 3 chr4 141484132 141484500 -60843847 - MLT2A2 LTR ERVL -81 372 1 22 35 0 0 chr4 141486378 141486407 -60841940 + AT_rich Low_complexity Low_complexity 1 29 0 975 213 47 53 chr4 141487103 141487404 -60840943 - LTR56 LTR ERV1 -138 307 9 269 200 43 70 chr4 141487478 141487593 -60840754 + L1MC4 LINE L1 6592 6703 -1339 2222 153 5 16 chr4 141488075 141488454 -60839893 - THE1C LTR MaLR 0 375 1 9099 140 52 7 chr4 141488454 141489536 -60838811 - THE1C-int LTR MaLR 0 1580 409 228 35 0 0 chr4 141489536 141489565 -60838782 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 9099 140 52 7 chr4 141489565 141489994 -60838353 - THE1C-int LTR MaLR -1171 409 1 2233 137 11 24 chr4 141489994 141490374 -60837973 - THE1C LTR MaLR 0 375 1 1873 155 0 0 chr4 141490488 141490800 -60837547 + AluSg SINE Alu 1 312 0 555 365 4 26 chr4 141491038 141491268 -60837079 - MIR SINE MIR -1 261 37 1865 164 0 19 chr4 141491477 141491787 -60836560 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr4 141491787 141491809 -60836538 + AT_rich Low_complexity Low_complexity 1 22 0 7395 39 0 6 chr4 141491809 141492736 -60835611 - L1PA4 LINE L1 -3 6152 5227 596 210 7 43 chr4 141493004 141493142 -60835205 - FLAM_A SINE Alu 0 133 1 1562 274 88 33 chr4 141493270 141494224 -60834123 - L1MC4 LINE L1 -152 7890 6723 298 299 104 9 chr4 141494226 141494437 -60833910 - L1MC4 LINE L1 -1350 6692 6462 1421 142 78 72 chr4 141494587 141494917 -60833430 + THE1C LTR MaLR 1 335 -40 1990 139 3 7 chr4 141494917 141495218 -60833129 - AluSx SINE Alu -12 300 1 1421 142 78 72 chr4 141495218 141495260 -60833087 + THE1C LTR MaLR 335 375 0 561 287 69 20 chr4 141496002 141496204 -60832143 - MIR SINE MIR -6 256 45 23 33 0 0 chr4 141497985 141498015 -60830332 + AT_rich Low_complexity Low_complexity 1 30 0 55 16 0 0 chr4 141498269 141498331 -60830016 + AT_rich Low_complexity Low_complexity 1 62 0 4023 257 88 39 chr4 141498502 141501200 -60827147 + L1M4 LINE L1 24 2885 -3759 921 216 126 60 chr4 141551574 141551922 -60776425 + MER93b LTR ERV1 1 371 -2 2408 252 92 57 chr4 141552482 141552672 -60775675 + L1M4b LINE L1 90 272 -6587 192 40 0 0 chr4 141552672 141552697 -60775650 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2408 252 92 57 chr4 141552697 141553806 -60774541 + L1M4b LINE L1 272 1522 -5337 672 278 37 31 chr4 141553815 141554142 -60774205 + L1M4b LINE L1 1618 1946 -4909 301 203 76 51 chr4 141554174 141554292 -60774055 + L1M4b LINE L1 1826 1946 -5013 12297 139 42 2 chr4 141554362 141556355 -60771992 - Tigger1 DNA MER2_type -317 2101 30 397 316 70 44 chr4 141556578 141556894 -60771453 - HAL1b LINE L1 -945 403 80 1271 265 60 26 chr4 141556996 141557578 -60770769 - L1ME2 LINE L1 0 6164 5563 479 230 42 50 chr4 141557566 141557643 -60770704 - L1ME2 LINE L1 -1684 4462 4386 * 1813 131 4 0 chr4 141557643 141557902 -60770445 - AluSx SINE Alu -18 294 35 479 230 42 50 chr4 141557902 141558063 -60770284 - L1ME2 LINE L1 -1760 4386 4226 466 317 53 0 chr4 141558091 141558318 -60770029 - L1ME2 LINE L1 -3264 2882 2644 545 156 0 0 chr4 141558395 141558491 -60769856 - LTR28 LTR ERV1 -799 221 126 497 154 35 70 chr4 141558556 141558699 -60769648 - LTR27 LTR ERV1 0 636 499 1150 243 12 38 chr4 141558764 141559139 -60769208 - LTR27 LTR ERV1 -140 496 168 785 241 52 19 chr4 141562294 141562601 -60765746 - MER114 LTR ERV -108 540 224 320 281 16 0 chr4 141562632 141562760 -60765587 - MER114 LTR ERV -479 169 40 411 191 15 53 chr4 141563561 141563692 -60764655 + L1M4 LINE L1 3929 4054 -2092 2111 252 45 49 chr4 141563694 141564741 -60763606 + L1M4 LINE L1 4256 5298 -848 221 179 39 39 chr4 141565054 141565132 -60763215 + (TTATA)n Simple_repeat Simple_repeat 2 79 0 2853 227 58 2 chr4 141565285 141565911 -60762436 - MLT1A1-int LTR MaLR -1073 662 2 1161 195 72 57 chr4 141565912 141566261 -60762086 - MLT1A1 LTR MaLR 0 365 12 387 0 0 0 chr4 141566566 141566609 -60761738 + (TG)n Simple_repeat Simple_repeat 2 44 0 2321 86 0 3 chr4 141567208 141567511 -60760836 + AluY SINE Alu 1 302 -9 184 244 24 0 chr4 141568063 141568104 -60760243 - MIR SINE MIR -21 241 200 23 0 0 0 chr4 141568331 141568354 -60759993 + AT_rich Low_complexity Low_complexity 1 23 0 1840 123 88 125 chr4 141568359 141568871 -60759476 - L1MA7 LINE L1 -30 6261 5769 339 328 115 6 chr4 141569040 141569214 -60759133 - MIR SINE MIR 0 262 70 189 383 61 0 chr4 141569252 141569367 -60758980 + L2 LINE L2 3132 3253 -19 225 0 0 0 chr4 141569600 141569625 -60758722 + (TA)n Simple_repeat Simple_repeat 1 25 0 43 47 0 0 chr4 141569649 141569713 -60758634 + AT_rich Low_complexity Low_complexity 1 64 0 689 232 76 63 chr4 141570716 141570953 -60757394 - MLT2C2 LTR ERVL -3 461 222 2124 204 92 5 chr4 141572743 141573190 -60755157 - MER66B LTR ERV1 0 486 1 470 261 92 65 chr4 141573205 141573414 -60754933 + Charlie2b DNA MER1_type 8 227 -2635 240 35 0 0 chr4 141573414 141573443 -60754904 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 470 261 92 65 chr4 141573443 141573493 -60754854 + Charlie2b DNA MER1_type 227 274 -2588 581 249 170 54 chr4 141573550 141573827 -60754520 + Charlie2b DNA MER1_type 384 692 -2090 348 198 12 0 chr4 141573858 141573939 -60754408 + Charlie2a DNA MER1_type 1473 1554 -1308 27 0 0 0 chr4 141574340 141574367 -60753980 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr4 141574535 141574556 -60753791 + AT_rich Low_complexity Low_complexity 1 21 0 263 225 88 25 chr4 141574651 141574731 -60753616 - MIR SINE MIR -46 216 132 2267 101 0 13 chr4 141575010 141575318 -60753029 - AluSg SINE Alu -6 304 1 561 310 82 17 chr4 141575418 141575650 -60752697 + MIR SINE MIR 13 259 -3 21 36 0 0 chr4 141576661 141576689 -60751658 + AT_rich Low_complexity Low_complexity 1 28 0 1664 168 118 62 chr4 141577395 141577618 -60750729 - LTR18B LTR ERVL -156 458 249 192 40 0 0 chr4 141577618 141577643 -60750704 + (TC)n Simple_repeat Simple_repeat 2 26 0 1664 168 118 62 chr4 141577643 141577853 -60750494 - LTR18B LTR ERVL -365 249 1 1012 139 0 7 chr4 141577880 141578031 -60750316 - AluSg/x SINE Alu -29 281 132 1811 130 3 14 chr4 141578031 141578324 -60750023 - AluSq SINE Alu -5 308 19 911 224 81 31 chr4 141579161 141579483 -60748864 + MER44D DNA MER2_type 2 609 0 328 355 83 12 chr4 141580408 141580577 -60747770 + MIR3 SINE MIR 19 199 -9 1488 167 175 22 chr4 141582495 141582866 -60745481 - MSTA LTR MaLR 0 428 1 748 267 63 45 chr4 141583073 141583446 -60744901 - L1MEc LINE L1 -3598 2784 2419 1167 241 68 20 chr4 141583446 141583798 -60744549 + MLT1A2 LTR MaLR 2 370 -4 748 267 63 45 chr4 141583798 141584240 -60744107 - L1MEc LINE L1 -3963 2419 1993 22 56 0 0 chr4 141584240 141584276 -60744071 + AT_rich Low_complexity Low_complexity 1 36 0 230 283 112 26 chr4 141584323 141584475 -60743872 - L1MEc LINE L1 -4663 1721 1557 22 35 0 0 chr4 141585034 141585063 -60743284 + AT_rich Low_complexity Low_complexity 1 29 0 1348 247 91 39 chr4 141585156 141585674 -60742673 - L1MD1 LINE L1 0 6242 5698 2182 276 63 30 chr4 141585783 141586839 -60741508 - L1MD1 LINE L1 -2192 3954 2849 189 0 0 0 chr4 141586839 141586860 -60741487 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2182 276 63 30 chr4 141586860 141587049 -60741298 - L1MD1 LINE L1 -3297 2849 2668 594 258 68 87 chr4 141587233 141587613 -60740734 - MLT1H LTR MaLR -131 418 46 23 78 0 0 chr4 141587704 141587755 -60740592 + AT_rich Low_complexity Low_complexity 1 51 0 2372 27 20 10 chr4 141588075 141588370 -60739977 - AluY SINE Alu -13 298 1 279 368 8 0 chr4 141588795 141588912 -60739435 - MIR SINE MIR -72 190 73 30 45 0 0 chr4 141589652 141589696 -60738651 + AT_rich Low_complexity Low_complexity 1 44 0 325 217 109 0 chr4 141590528 141590620 -60737727 + L1MB7 LINE L1 2606 2707 -3439 247 204 37 0 chr4 141590626 141590680 -60737667 - L1MD1 LINE L1 -3440 2706 2651 6300 217 63 65 chr4 141590726 141591705 -60736642 + L1MB7 LINE L1 2734 3713 -2471 2832 73 0 0 chr4 141591705 141592077 -60736270 - L1PA7 LINE L1 -15 6139 5768 6300 217 63 65 chr4 141592077 141593058 -60735289 + L1MB7 LINE L1 3713 4694 -1490 2420 24 44 0 chr4 141593058 141593353 -60734994 - AluY SINE Alu -3 308 1 6300 217 63 65 chr4 141593353 141594210 -60734137 + L1MB7 LINE L1 4694 5678 -506 240 35 0 0 chr4 141594210 141594239 -60734108 + (CA)n Simple_repeat Simple_repeat 2 30 0 6300 217 63 65 chr4 141594239 141594472 -60733875 + L1MB7 LINE L1 5678 5910 -274 1336 257 77 27 chr4 141594680 141595250 -60733097 - Charlie6 DNA MER1_type -325 3175 2574 939 74 0 7 chr4 141595250 141595385 -60732962 + L1PB1 LINE L1 6018 6151 0 1336 257 77 27 chr4 141595385 141595402 -60732945 - Charlie6 DNA MER1_type -926 2574 2559 5389 246 113 36 chr4 141595604 141596315 -60732032 - Charlie6 DNA MER1_type -1229 2271 1616 183 42 0 0 chr4 141596315 141596339 -60732008 + (CTTG)n Simple_repeat Simple_repeat 4 27 0 5389 246 113 36 chr4 141596339 141597668 -60730679 - Charlie6 DNA MER1_type -1884 1616 74 183 336 78 16 chr4 141597971 141598099 -60730248 + L2 LINE L2 1575 1710 -1604 280 332 124 35 chr4 141598427 141598629 -60729718 + L2 LINE L2 1745 1964 -1350 642 316 40 78 chr4 141598775 141599393 -60728954 + L2 LINE L2 2273 2867 -447 548 55 14 0 chr4 141599604 141599677 -60728670 - L1PA7 LINE L1 -13 6141 6068 25 31 0 0 chr4 141600614 141600646 -60727701 + AT_rich Low_complexity Low_complexity 1 32 0 2742 198 44 10 chr4 141600827 141601413 -60726934 - L1MB1 LINE L1 -1 6167 5562 1806 132 10 3 chr4 141602129 141602424 -60725923 + L1PA13 LINE L1 5863 6159 -4 2331 117 16 19 chr4 141602696 141603072 -60725275 - THE1C LTR MaLR 0 375 1 256 276 64 54 chr4 141603371 141603574 -60724773 - MER113 DNA MER1_type? -283 238 34 393 308 35 18 chr4 141603662 141603831 -60724516 + MIR SINE MIR 73 244 -18 26 50 0 0 chr4 141604493 141604533 -60723814 + AT_rich Low_complexity Low_complexity 1 40 0 2333 183 15 81 chr4 141606169 141606753 -60721594 + MER101B LTR ERV1 22 567 -3 330 45 0 0 chr4 141606766 141606810 -60721537 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 215 125 36 18 chr4 141606811 141606867 -60721480 + (TA)n Simple_repeat Simple_repeat 2 58 0 25 0 0 0 chr4 141607920 141607945 -60720402 + AT_rich Low_complexity Low_complexity 1 25 0 294 299 5 27 chr4 141608622 141608838 -60719509 + L1MEc LINE L1 1217 1387 -5039 378 294 51 81 chr4 141608839 141609135 -60719212 + L1MEc LINE L1 1246 1532 -4894 289 290 116 7 chr4 141609139 141609277 -60719070 + L1MEc LINE L1 1804 1956 -4651 1645 188 10 7 chr4 141609283 141609592 -60718755 + AluJb SINE Alu 1 310 -2 704 208 112 43 chr4 141609623 141609926 -60718421 - MER33 DNA MER1_type 0 324 1 488 274 68 34 chr4 141609928 141610249 -60718098 + L1MEc LINE L1 2441 2772 -3654 42 36 0 0 chr4 141610305 141610361 -60717986 + AT_rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr4 141610823 141610846 -60717501 + AT_rich Low_complexity Low_complexity 1 23 0 203 183 17 33 chr4 141610846 141610906 -60717441 + A-rich Low_complexity Low_complexity 1 59 0 23 0 0 0 chr4 141611392 141611415 -60716932 + AT_rich Low_complexity Low_complexity 1 23 0 301 248 91 33 chr4 141611555 141611676 -60716671 - MIR SINE MIR -52 210 83 1684 150 150 21 chr4 141613326 141613705 -60714642 - MSTA LTR MaLR 0 428 1 633 305 25 10 chr4 141614186 141614383 -60713964 + MIR SINE MIR 23 222 -40 301 336 137 0 chr4 141614456 141614587 -60713760 + MIR SINE MIR 6 154 -108 24 53 0 0 chr4 141615230 141615268 -60713079 + AT_rich Low_complexity Low_complexity 1 38 0 2075 139 7 3 chr4 141615342 141615651 -60712696 + AluSq SINE Alu 1 310 -3 29 0 0 0 chr4 141615705 141615734 -60712613 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr4 141615991 141616025 -60712322 + AT_rich Low_complexity Low_complexity 1 34 0 897 81 16 0 chr4 141616028 141616151 -60712196 - L1PB1 LINE L1 -9 6142 6018 25 0 0 0 chr4 141617626 141617651 -60710696 + AT_rich Low_complexity Low_complexity 1 25 0 243 230 18 35 chr4 141617913 141618026 -60710321 + (TTATA)n Simple_repeat Simple_repeat 1 111 0 572 258 0 68 chr4 141618044 141618234 -60710113 - MLT1E LTR MaLR 0 593 417 2646 261 73 35 chr4 141618234 141619173 -60709174 + L1MB4 LINE L1 29 1003 -5381 306 247 56 22 chr4 141619193 141619352 -60708995 + L1MB4 LINE L1 3871 4033 -2349 4813 264 26 15 chr4 141619562 141621078 -60707269 + L1M4 LINE L1 3635 5167 -979 339 136 0 0 chr4 141621074 141621140 -60707207 - L1M LINE L1 -984 5320 5255 * 4578 115 12 8 chr4 141621140 141621218 -60707129 - L1MA1 LINE L1 -244 6058 5982 1765 113 15 88 chr4 141621218 141621546 -60706801 - AluSq SINE Alu -9 304 1 4578 115 12 8 chr4 141621546 141622200 -60706147 - L1MA1 LINE L1 -320 5982 5323 351 106 0 61 chr4 141622200 141622266 -60706081 + L1MA2 LINE L1 6238 6299 -5 23 0 0 0 chr4 141622267 141622290 -60706057 + AT_rich Low_complexity Low_complexity 1 23 0 746 186 39 70 chr4 141622290 141622469 -60705878 + L1M4 LINE L1 5152 5322 -824 906 229 0 0 chr4 141622469 141622635 -60705712 + FRAM SINE Alu 1 166 0 746 186 39 70 chr4 141622635 141622713 -60705634 + L1M4 LINE L1 5322 5401 -745 858 275 40 16 chr4 141622868 141623243 -60705104 + L1MB4 LINE L1 5020 5403 -979 4509 119 12 8 chr4 141623305 141623383 -60704964 - L1MA1 LINE L1 -244 6058 5982 1815 107 15 88 chr4 141623383 141623711 -60704636 - AluSq SINE Alu -9 304 1 4509 119 12 8 chr4 141623711 141624365 -60703982 - L1MA1 LINE L1 -320 5982 5323 351 106 0 61 chr4 141624365 141624431 -60703916 + L1MA2 LINE L1 6238 6299 -5 23 0 0 0 chr4 141624432 141624455 -60703892 + AT_rich Low_complexity Low_complexity 1 23 0 3411 192 64 37 chr4 141624455 141624634 -60703713 + L1MB4 LINE L1 5388 5561 -855 906 229 0 0 chr4 141624634 141624800 -60703547 + FRAM SINE Alu 1 166 0 3411 192 64 37 chr4 141624800 141625593 -60702754 + L1MB4 LINE L1 5561 6408 -8 637 273 73 58 chr4 141625624 141625971 -60702376 - MLT1F1 LTR MaLR -174 393 39 7021 204 21 57 chr4 141625992 141626319 -60702028 + L1PB4 LINE L1 3472 3809 -2337 2266 114 0 0 chr4 141626319 141626627 -60701720 + AluSc SINE Alu 1 308 -1 7021 204 21 57 chr4 141626627 141628275 -60700072 + L1PB4 LINE L1 3809 5375 -771 3029 189 53 3 chr4 141628288 141628964 -60699383 + L1PB4 LINE L1 5447 6156 0 23 54 0 0 chr4 141629794 141629831 -60698516 + AT_rich Low_complexity Low_complexity 1 37 0 1622 177 66 118 chr4 141630061 141630610 -60697737 + MLT2B1 LTR ERVL 1 520 0 1304 159 15 127 chr4 141631217 141631556 -60696791 + AluJb SINE Alu 1 301 -1 621 274 99 77 chr4 141631947 141632585 -60695762 + MER31-int LTR ERV1 3403 4054 -882 2012 225 61 54 chr4 141632626 141632643 -60695704 - L1M4 LINE L1 -946 6011 5996 1743 221 14 9 chr4 141632643 141633082 -60695265 - L1MB8 LINE L1 -2 6176 5736 2012 225 61 54 chr4 141633082 141633770 -60694577 - L1M4 LINE L1 -961 5996 5301 635 269 36 78 chr4 141633767 141634075 -60694272 - L1M4 LINE L1 -5360 1499 1205 * 2370 214 44 33 chr4 141634317 141634836 -60693511 - MLT2B3 LTR ERVL -29 525 1 431 267 61 0 chr4 141637406 141637537 -60690810 - MIR SINE MIR -30 232 94 35 0 0 0 chr4 141637863 141637898 -60690449 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 141637932 141637953 -60690394 + AT_rich Low_complexity Low_complexity 1 21 0 298 294 206 12 chr4 141638514 141638674 -60689673 + MIR SINE MIR 2 192 -70 619 279 16 6 chr4 141639471 141639654 -60688693 + L1M3b LINE L1 11 195 -6086 * 4656 189 45 53 chr4 141639651 141641192 -60687155 + L1MA9 LINE L1 4744 6262 -50 267 222 42 0 chr4 141641191 141641263 -60687084 + L1 LINE L1 5087 5161 -985 * 27 29 0 0 chr4 141641316 141641350 -60686997 + AT_rich Low_complexity Low_complexity 1 34 0 3726 168 36 21 chr4 141641410 141642183 -60686164 + LTR1 LTR ERV1 1 785 0 186 133 0 0 chr4 141643920 141643950 -60684397 + (TA)n Simple_repeat Simple_repeat 2 31 0 192 77 0 0 chr4 141644007 141644033 -60684314 + (TA)n Simple_repeat Simple_repeat 2 27 0 2196 120 0 0 chr4 141644376 141644684 -60683663 - AluSg SINE Alu -2 308 1 1857 155 88 26 chr4 141644839 141645278 -60683069 - LTR10A LTR ERV1 0 609 97 11522 143 31 42 chr4 141645316 141649224 -60679123 - Harlequin LTR ERV1 -4 6645 1045 2183 92 0 0 chr4 141649224 141649529 -60678818 - AluY SINE Alu 0 305 1 11522 143 31 42 chr4 141649529 141649866 -60678481 - Harlequin LTR ERV1 -5604 1045 706 355 292 71 0 chr4 141649990 141650144 -60678203 - Harlequin LTR ERV1 -6039 610 446 791 256 50 7 chr4 141650384 141650661 -60677686 - Harlequin LTR ERV1 -6360 289 1 1689 144 64 31 chr4 141650670 141650996 -60677351 - LTR10A LTR ERV1 -61 548 212 314 231 103 0 chr4 141651016 141651094 -60677253 - LTR10A LTR ERV1 -511 98 13 1985 120 3 7 chr4 141651903 141652194 -60676153 + AluSq SINE Alu 14 303 -10 31 26 0 0 chr4 141652459 141652497 -60675850 + AT_rich Low_complexity Low_complexity 1 38 0 224 255 236 0 chr4 141652603 141652709 -60675638 - MIR SINE MIR -54 208 78 1794 173 129 11 chr4 141653510 141653891 -60674456 - MSTA LTR MaLR -2 426 1 25 31 0 0 chr4 141654433 141654465 -60673882 + AT_rich Low_complexity Low_complexity 1 32 0 262 335 100 24 chr4 141655727 141655897 -60672450 - MER5A DNA MER1_type 0 189 7 21 36 0 0 chr4 141656964 141656992 -60671355 + AT_rich Low_complexity Low_complexity 1 28 0 1429 225 131 64 chr4 141657105 141657624 -60670723 + MLT2B3 LTR ERVL 1 554 0 3652 223 60 41 chr4 141658158 141659353 -60668994 - L1 LINE L1 -2374 3836 2619 1074 270 25 25 chr4 141659356 141659723 -60668624 - L1 LINE L1 -4870 1271 905 455 299 69 29 chr4 141660026 141660230 -60668117 - L1 LINE L1 -5679 452 241 235 250 14 0 chr4 141660224 141660296 -60668051 - L1MEc LINE L1 -3208 3007 2935 * 426 263 56 100 chr4 141660282 141661089 -60667258 - L1MEc LINE L1 -4736 1479 754 1810 301 132 32 chr4 141661089 141662133 -60666214 + L2 LINE L2 1876 3025 -288 1062 241 17 53 chr4 141662157 141662456 -60665891 - LTR40a LTR ERVL -231 288 1 373 280 64 50 chr4 141662566 141662784 -60665563 + L1ME LINE L1 5363 5583 -579 1493 178 70 7 chr4 141662786 141663072 -60665275 + AluJb SINE Alu 1 304 -8 1190 217 65 52 chr4 141663214 141663596 -60664751 - MLT1B LTR MaLR -3 387 1 21 89 0 0 chr4 141665487 141665543 -60662804 + AT_rich Low_complexity Low_complexity 1 56 0 29 28 0 0 chr4 141666040 141666076 -60662271 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr4 141666096 141666132 -60662215 + AT_rich Low_complexity Low_complexity 1 36 0 240 336 23 16 chr4 141666175 141666303 -60662044 + MER94 DNA DNA 1 129 -5 24 91 0 0 chr4 141666347 141666413 -60661934 + AT_rich Low_complexity Low_complexity 1 66 0 430 174 10 20 chr4 141666465 141666563 -60661784 + L1MA5 LINE L1 6202 6298 -2 286 313 31 8 chr4 141667719 141667847 -60660500 - L1ME3A LINE L1 -21 6149 6019 1540 182 25 7 chr4 141667928 141668208 -60660139 - AluJb SINE Alu -27 285 1 5107 212 35 50 chr4 141669797 141672836 -60655511 + L1M2 LINE L1 1420 4414 -2434 595 67 11 11 chr4 141672836 141672926 -60655421 + (TTCC)n Simple_repeat Simple_repeat 4 93 0 2001 103 3 17 chr4 141672937 141673228 -60655119 - AluSg SINE Alu -23 287 1 1989 207 26 11 chr4 141673229 141673688 -60654659 + L1M2 LINE L1 4402 4867 -1981 914 216 0 28 chr4 141673849 141674062 -60654285 - MER3 DNA MER1_type -1 208 2 1024 174 37 11 chr4 141675670 141675860 -60652487 - MSTB LTR MaLR -6 420 226 3182 230 53 36 chr4 141675873 141676251 -60652096 - MSTB-int LTR MaLR -327 1253 883 267 44 200 0 chr4 141676251 141676296 -60652051 + MADE1 DNA Mariner 1 54 -26 3182 230 53 36 chr4 141676296 141677108 -60651239 - MSTB-int LTR MaLR -697 883 1 1739 188 38 83 chr4 141677108 141677554 -60650793 - MSTB LTR MaLR 0 426 1 1274 224 56 7 chr4 141678014 141678300 -60650047 + AluJo SINE Alu 5 304 -8 4793 148 56 27 chr4 141679191 141680117 -60648230 - Tigger3b DNA MER2_type -5 1226 274 431 240 20 0 chr4 141680115 141680215 -60648132 - Tigger3b DNA MER2_type -1129 102 1 * 31 44 0 0 chr4 141680233 141680278 -60648069 + AT_rich Low_complexity Low_complexity 1 45 0 1003 143 18 6 chr4 141680467 141680653 -60647694 + L1MA4 LINE L1 5293 5483 -743 3709 153 56 8 chr4 141680654 141681391 -60646956 + L1MA4 LINE L1 5528 6299 -1 254 303 14 14 chr4 141681532 141681677 -60646670 + (TA)n Simple_repeat Simple_repeat 2 146 0 203 260 0 0 chr4 141682259 141682309 -60646038 + (TAG)n Simple_repeat Simple_repeat 1 50 0 308 368 58 18 chr4 141683745 141683916 -60644431 + MIR SINE MIR 8 185 -77 191 236 69 56 chr4 141685536 141685608 -60642739 - MIR SINE MIR -34 228 156 2875 191 17 7 chr4 141686825 141687024 -60641323 + L1MB3 LINE L1 5585 5781 -402 1385 168 116 12 chr4 141687024 141687351 -60640996 - MER46B DNA MER2_type 0 236 1 2875 191 17 7 chr4 141687351 141687741 -60640606 + L1MB3 LINE L1 5781 6180 -3 6813 236 53 29 chr4 141689126 141689868 -60638479 - L1MC3 LINE L1 -59 8354 7632 1502 191 3 14 chr4 141689868 141690151 -60638196 - AluJb SINE Alu -30 282 3 6813 236 53 29 chr4 141690151 141691817 -60636530 - L1MC3 LINE L1 -781 7632 5853 2016 166 30 6 chr4 141691817 141692155 -60636192 + MER7A DNA MER2_type 1 344 -2 6813 236 53 29 chr4 141692155 141692555 -60635792 - L1MC3 LINE L1 -2560 5853 5464 2188 238 59 17 chr4 141692539 141693410 -60634937 - L1MC3 LINE L1 -4871 1174 565 * 1153 216 12 12 chr4 141693410 141693651 -60634696 + L1MC/D LINE L1 188 428 -5998 747 272 34 37 chr4 141693637 141693990 -60634357 + L1MC/D LINE L1 4534 4885 -1541 * 2166 180 10 7 chr4 141694058 141694474 -60633873 + L1MC/D LINE L1 5621 6037 -576 277 122 143 0 chr4 141694471 141694520 -60633827 + L1MC1 LINE L1 6184 6239 -94 * 851 258 81 38 chr4 141694595 141695056 -60633291 + L1ME2 LINE L1 5677 6166 0 229 208 143 0 chr4 141695130 141695207 -60633140 - HAL1 LINE L1 -1457 1050 963 2182 102 16 0 chr4 141695798 141696102 -60632245 - AluSx SINE Alu -3 309 1 6408 205 59 2 chr4 141697381 141699260 -60629087 + L1MA2 LINE L1 15 2133 -5432 2091 139 37 25 chr4 141699260 141699613 -60628734 + THE1B LTR MaLR 1 357 -7 7022 116 23 25 chr4 141699616 141700222 -60628125 + L1MA2 LINE L1 2131 2736 -4829 2860 13 0 0 chr4 141700222 141700540 -60627807 + AluYb8 SINE Alu 1 318 0 7022 116 23 25 chr4 141700540 141701155 -60627192 + L1MA2 LINE L1 2736 3350 -4215 18155 186 25 9 chr4 141701165 141703587 -60624760 + L1MA1 LINE L1 17 2508 -5057 1594 138 7 65 chr4 141703587 141703863 -60624484 + AluSx SINE Alu 36 295 -17 18155 186 25 9 chr4 141703863 141704851 -60623496 + L1MA1 LINE L1 2508 3479 -4086 2776 216 9 35 chr4 141704825 141705560 -60622787 + L1MA1 LINE L1 6036 6751 -814 * 375 163 22 65 chr4 141705563 141705655 -60622692 + AluY SINE Alu 210 297 -4 6055 132 16 8 chr4 141705657 141706627 -60621720 + L1MA1 LINE L1 6745 7721 0 13466 177 38 31 chr4 141706740 141708736 -60619611 + L1MA2 LINE L1 3331 5312 -2411 3628 109 4 6 chr4 141708736 141709276 -60619071 - L1PB1 LINE L1 -1 6150 5612 13466 177 38 31 chr4 141709276 141711585 -60616762 + L1MA2 LINE L1 5312 7669 -54 2297 95 0 3 chr4 141711585 141711889 -60616458 + AluY SINE Alu 1 303 -8 13466 177 38 31 chr4 141711889 141711938 -60616409 + L1MA2 LINE L1 7669 7716 -7 27 29 0 0 chr4 141711938 141711972 -60616375 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr4 141712098 141712123 -60616224 + AT_rich Low_complexity Low_complexity 1 25 0 198 246 0 0 chr4 141712183 141712244 -60616103 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 310 224 24 12 chr4 141712577 141712662 -60615685 + MIR SINE MIR 176 261 -1 690 210 14 7 chr4 141713967 141714110 -60614237 + AluJb SINE Alu 143 286 -26 21 0 0 0 chr4 141714110 141714131 -60614216 + AT_rich Low_complexity Low_complexity 1 21 0 279 303 9 114 chr4 141714131 141714342 -60614005 - LTR67 LTR ERVL -367 190 2 544 240 33 22 chr4 141714566 141714749 -60613598 + L1MC5 LINE L1 7732 7916 -45 280 208 0 0 chr4 141715135 141715188 -60613159 + L1 LINE L1 2975 3027 -3119 326 203 53 4 chr4 141715979 141716089 -60612258 - L1MC4 LINE L1 -1339 6983 1995 200 175 75 0 chr4 141716131 141716171 -60612176 - L2 LINE L2 -10 3303 3261 2729 169 48 8 chr4 141716249 141716752 -60611595 + L1MB2 LINE L1 5444 5966 -205 6490 166 56 7 chr4 141716860 141718269 -60610078 + L1PBa LINE L1 1628 3106 -3756 1306 144 5 5 chr4 141718370 141718571 -60609776 + AluSc SINE Alu 99 299 -10 1350 216 10 80 chr4 141718589 141718991 -60609356 - MLT1A2 LTR MaLR 0 374 1 275 280 0 0 chr4 141719185 141719260 -60609087 + (CATATA)n Simple_repeat Simple_repeat 4 78 0 23 54 0 0 chr4 141719270 141719307 -60609040 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr4 141719420 141719460 -60608887 + AT_rich Low_complexity Low_complexity 1 40 0 290 316 21 0 chr4 141719595 141719690 -60608657 + MLT1J2 LTR MaLR 33 129 -321 375 307 83 63 chr4 141719731 141720177 -60608170 + L1MC4a LINE L1 5642 6096 -1712 2187 99 0 3 chr4 141720181 141720492 -60607855 - AluSx SINE Alu 0 310 1 37 23 0 0 chr4 141720560 141720604 -60607743 + AT_rich Low_complexity Low_complexity 1 44 0 4269 32 0 2 chr4 141721518 141722024 -60606323 - L1PA3 LINE L1 0 6155 5651 388 245 26 13 chr4 141722240 141722395 -60605952 + (TA)n Simple_repeat Simple_repeat 1 157 0 301 321 22 67 chr4 141722538 141722762 -60605585 - MLT1H LTR MaLR -290 259 46 387 364 78 37 chr4 141723319 141723970 -60604377 - L2 LINE L2 -776 2538 1861 22 35 0 0 chr4 141724986 141725015 -60603332 + AT_rich Low_complexity Low_complexity 1 29 0 247 190 35 0 chr4 141725091 141725149 -60603198 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 3668 154 59 73 chr4 141725269 141725429 -60602918 - L1MA8 LINE L1 -5 6286 6125 255 61 0 0 chr4 141725429 141725462 -60602885 + (TA)n Simple_repeat Simple_repeat 1 33 0 3668 154 59 73 chr4 141725462 141726162 -60602185 - L1MA8 LINE L1 -166 6125 5438 972 264 52 20 chr4 141726307 141726766 -60601581 - L1MDa LINE L1 -3486 3054 2581 6457 155 57 2 chr4 141726773 141727934 -60600413 + Tigger3b DNA MER2_type 7 1231 0 548 219 52 21 chr4 141727942 141728262 -60600085 - L1MDa LINE L1 -3968 2572 2091 2503 41 0 0 chr4 141728787 141729079 -60599268 + AluY SINE Alu 1 292 -19 412 246 32 1 chr4 141729611 141729725 -60598622 + L1ME1 LINE L1 5991 6108 -54 5383 323 51 37 chr4 141729951 141730516 -60597831 + L1MA5 LINE L1 24 580 -6073 1455 115 5 0 chr4 141730516 141730724 -60597623 + AluSq SINE Alu 1 209 -104 5383 323 51 37 chr4 141730724 141731776 -60596571 + L1MA5 LINE L1 580 1413 -5240 2295 129 5 27 chr4 141731776 141732148 -60596199 + THE1B LTR MaLR 1 364 0 5383 323 51 37 chr4 141732148 141732884 -60595463 + L1MA5 LINE L1 1413 2137 -4516 705 227 93 11 chr4 141732899 141733168 -60595179 + L1MA5 LINE L1 3651 3941 -2791 2046 119 10 3 chr4 141733559 141733852 -60594495 - AluSg SINE Alu -15 295 1 22 0 0 0 chr4 141734154 141734176 -60594171 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr4 141734238 141734273 -60594074 + AT_rich Low_complexity Low_complexity 1 35 0 1927 276 67 44 chr4 141734578 141735985 -60592362 + L1ME2 LINE L1 4735 6156 -8 198 0 0 0 chr4 141736228 141736250 -60592097 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 276 30 0 0 chr4 141736249 141736282 -60592065 + (TA)n Simple_repeat Simple_repeat 2 34 0 439 159 40 0 chr4 141736293 141736497 -60591850 + (TA)n Simple_repeat Simple_repeat 1 212 0 7957 188 42 35 chr4 141736599 141737451 -60590896 + L1MA5 LINE L1 4058 4903 -1983 290 157 0 0 chr4 141737451 141737502 -60590845 - MADE1 DNA Mariner -29 51 1 7957 188 42 35 chr4 141737502 141738998 -60589349 + L1MA5 LINE L1 4903 6444 -442 21 71 0 0 chr4 141739292 141739334 -60589013 + AT_rich Low_complexity Low_complexity 1 42 0 1635 173 3 38 chr4 141739336 141739654 -60588693 + AluJo SINE Alu 5 311 -1 1776 168 3 3 chr4 141739755 141740041 -60588306 + AluJb SINE Alu 11 296 -16 24 32 0 0 chr4 141740359 141740390 -60587957 + AT_rich Low_complexity Low_complexity 1 31 0 252 293 86 66 chr4 141741199 141741397 -60586950 - MLT1H LTR MaLR -249 300 99 201 147 0 0 chr4 141742266 141742300 -60586047 + (TTTTC)n Simple_repeat Simple_repeat 1 34 0 23 33 0 0 chr4 141742767 141742797 -60585550 + AT_rich Low_complexity Low_complexity 1 30 0 2400 80 0 10 chr4 141744099 141744411 -60583936 - AluSc SINE Alu 0 309 1 315 344 53 42 chr4 141744723 141744985 -60583362 - HAL1b LINE L1 -673 675 411 192 77 0 0 chr4 141745560 141745586 -60582761 + (TA)n Simple_repeat Simple_repeat 2 27 0 2053 115 3 0 chr4 141745586 141745872 -60582475 - AluSx SINE Alu -23 289 3 536 251 49 66 chr4 141746356 141746539 -60581808 + MIR SINE MIR 5 184 -78 21 36 0 0 chr4 141747142 141747170 -60581177 + AT_rich Low_complexity Low_complexity 1 28 0 333 47 0 0 chr4 141748038 141748081 -60580266 + (CA)n Simple_repeat Simple_repeat 2 44 0 493 303 137 29 chr4 141748806 141749384 -60578963 - L1ME3 LINE L1 -205 5957 5318 424 276 103 30 chr4 141749568 141749938 -60578409 - L1ME3 LINE L1 -1942 4204 3808 823 261 136 54 chr4 141750062 141750579 -60577768 - MLT1F1 LTR MaLR -7 560 1 22 35 0 0 chr4 141750643 141750672 -60577675 + AT_rich Low_complexity Low_complexity 1 29 0 359 255 87 26 chr4 141750844 141751075 -60577272 - L1ME3 LINE L1 -3103 3043 2799 2226 169 30 16 chr4 141751202 141751628 -60576719 - MSTB1 LTR MaLR 0 432 1 1027 71 143 7 chr4 141751786 141751940 -60576407 + MLT2A1 LTR ERVL 270 444 0 1850 230 47 96 chr4 141751978 141752679 -60575668 - HERVL68 LTR ERVL -225 2812 2146 1977 146 0 0 chr4 141752742 141753022 -60575325 - AluSx SINE Alu -32 280 1 670 235 44 6 chr4 141753025 141753208 -60575139 - HERVL68 LTR ERVL -926 2111 1922 535 219 47 16 chr4 141754286 141754414 -60573933 - MER76 LTR ERV -96 592 461 245 127 14 70 chr4 141755585 141755656 -60572691 + (TATAA)n Simple_repeat Simple_repeat 3 69 0 335 309 18 30 chr4 141756234 141756402 -60571945 + L1ME LINE L1 5523 5688 -474 243 0 0 0 chr4 141756468 141756495 -60571852 + (CA)n Simple_repeat Simple_repeat 2 28 0 2271 93 0 10 chr4 141757353 141757654 -60570693 - AluSc SINE Alu -11 298 1 1514 206 0 21 chr4 141758389 141758675 -60569672 + AluJb SINE Alu 1 280 -32 180 0 0 0 chr4 141758677 141758697 -60569650 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 210 387 78 14 chr4 141759149 141759291 -60569056 + L2 LINE L2 3122 3272 0 1899 169 3 52 chr4 141759786 141760171 -60568176 - MLT1B LTR MaLR -2 388 23 273 163 0 0 chr4 141760314 141760363 -60567984 + (TA)n Simple_repeat Simple_repeat 1 49 0 1549 116 113 57 chr4 141760381 141760682 -60567665 + MER7A DNA MER2_type 31 346 0 27 62 0 0 chr4 141760763 141760811 -60567536 + AT_rich Low_complexity Low_complexity 1 48 0 239 286 0 14 chr4 141761210 141761280 -60567067 + CT-rich Low_complexity Low_complexity 2 70 0 2111 115 23 0 chr4 141761322 141761627 -60566720 + AluSp SINE Alu 1 312 -1 1559 128 0 82 chr4 141762196 141762477 -60565870 - AluSx SINE Alu -11 301 44 2419 83 0 6 chr4 141762546 141762858 -60565489 - AluY SINE Alu -1 310 1 2558 94 31 0 chr4 141763582 141763964 -60564383 + L1MA1 LINE L1 5904 6297 -5 195 42 0 0 chr4 141764072 141764096 -60564251 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 1324 130 23 0 chr4 141764240 141764455 -60563892 + L1PA15 LINE L1 5938 6157 -8 850 173 16 48 chr4 141766805 141767053 -60561294 - Charlie5 DNA MER1_type -27 2585 2346 22 70 0 0 chr4 141767209 141767252 -60561095 + AT_rich Low_complexity Low_complexity 1 43 0 3601 100 46 4 chr4 141768388 141768888 -60559459 + LTR17 LTR ERV1 260 780 0 5451 72 6 22 chr4 141768888 141769605 -60558742 + HERV17 LTR ERV1 1 705 -7921 9438 72 9 4 chr4 141769795 141771034 -60557313 + HERV17 LTR ERV1 763 2007 -6619 * 27377 54 12 1 chr4 141771026 141774431 -60553916 + HERV17 LTR ERV1 2430 5902 -2724 1289 68 0 0 chr4 141774422 141774585 -60553762 + HERV17 LTR ERV1 6985 7147 -1479 * 309 51 0 0 chr4 141774581 141774620 -60553727 + HERV17 LTR ERV1 7510 7548 -1078 * 2326 76 0 0 chr4 141774611 141774902 -60553445 + HERV17 LTR ERV1 8336 8626 0 2342 92 0 6 chr4 141774902 141775228 -60553119 + LTR17 LTR ERV1 1 324 -456 23 0 0 0 chr4 141775302 141775325 -60553022 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr4 141775781 141775809 -60552538 + AT_rich Low_complexity Low_complexity 1 28 0 2205 123 0 0 chr4 141777290 141777590 -60550757 + AluSx SINE Alu 1 300 -12 21 57 0 0 chr4 141777690 141777725 -60550622 + AT_rich Low_complexity Low_complexity 1 35 0 309 356 101 37 chr4 141778433 141778997 -60549350 + L1M4 LINE L1 3248 3847 -2299 240 241 35 83 chr4 141779087 141779232 -60549115 + L1MCc LINE L1 56 193 -6230 2134 274 33 19 chr4 141779677 141780254 -60548093 + L1M3b LINE L1 507 1091 -5688 12566 215 26 25 chr4 141780256 141780423 -60547924 + L1M3b LINE L1 2762 2927 -3921 4303 87 2 3 chr4 141780423 141781009 -60547338 + L1PA6 LINE L1 5569 6153 -1 12566 215 26 25 chr4 141781009 141783586 -60544761 + L1M3b LINE L1 2927 5517 -1331 2123 174 14 34 chr4 141783586 141784028 -60544319 + Tigger2a DNA MER2_type 2 434 0 12566 215 26 25 chr4 141784028 141784548 -60543799 + L1M3b LINE L1 5517 6035 -813 2648 10 0 0 chr4 141784548 141784837 -60543510 + AluY SINE Alu 1 289 -22 310 343 0 0 chr4 141785648 141785756 -60542591 + MIR SINE MIR 47 154 -108 9455 205 16 94 chr4 141785771 141789682 -60538665 + L1M2a LINE L1 6 3576 -3591 1930 149 16 25 chr4 141789682 141789997 -60538350 + AluSx SINE Alu 1 312 0 9455 205 16 94 chr4 141789997 141790329 -60538018 + L1M2a LINE L1 3576 3932 -3235 1885 155 117 13 chr4 141790349 141790735 -60537612 - MSTA LTR MaLR -2 426 1 8645 152 16 55 chr4 141790735 141792230 -60536117 - MSTA-int LTR MaLR 0 1580 154 1762 150 87 0 chr4 141792230 141792517 -60535830 - AluSx SINE Alu 0 312 1 8645 152 16 55 chr4 141792517 141792664 -60535683 - MSTA-int LTR MaLR -1426 154 3 291 134 54 18 chr4 141792666 141792744 -60535603 - THE1C LTR MaLR 0 375 274 40459 31 18 1 chr4 141792744 141798732 -60529615 + L1PA2 LINE L1 38 6155 0 300 137 0 0 chr4 141798735 141798786 -60529561 + (A)n Simple_repeat Simple_repeat 1 51 0 1908 137 84 37 chr4 141798786 141799167 -60529180 - MSTA LTR MaLR -27 401 3 2573 212 85 32 chr4 141799169 141800013 -60528334 + L1M2a LINE L1 4041 4929 -2238 33 0 0 0 chr4 141801670 141801703 -60526644 + AT_rich Low_complexity Low_complexity 1 33 0 190 243 176 0 chr4 141801797 141801871 -60526476 - L2 LINE L2 0 3313 3227 195 69 0 0 chr4 141803416 141803445 -60524902 + (GA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr4 141804406 141804430 -60523917 + AT_rich Low_complexity Low_complexity 1 24 0 221 325 172 0 chr4 141804624 141804775 -60523572 - MIR SINE MIR 0 262 86 189 314 124 19 chr4 141804824 141804929 -60523418 - L2 LINE L2 -1333 1981 1866 2048 186 13 5 chr4 141805730 141806116 -60522231 + MLT1B LTR MaLR 2 390 0 261 189 31 16 chr4 141806119 141806246 -60522101 + (TA)n Simple_repeat Simple_repeat 1 129 0 304 315 29 16 chr4 141806400 141806566 -60521781 + MIR SINE MIR 45 213 -49 253 234 11 9 chr4 141806570 141806648 -60521699 + MER52A LTR ERV1 1 60 -1218 6819 190 67 45 chr4 141807022 141807622 -60520725 + MER52A LTR ERV1 56 641 -1114 3385 124 10 4 chr4 141807622 141808130 -60520217 + MER9 LTR ERVK 1 511 0 6819 190 67 45 chr4 141808130 141809097 -60519250 + MER52A LTR ERV1 641 1755 0 25 0 0 0 chr4 141809269 141809294 -60519053 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr4 141809391 141809423 -60518924 + AT_rich Low_complexity Low_complexity 1 32 0 851 310 75 71 chr4 141809697 141810551 -60517796 + L1MDa LINE L1 681 1537 -4993 284 276 109 22 chr4 141810694 141810909 -60517438 + L1MDa LINE L1 1844 2040 -861 1867 263 72 35 chr4 141811194 141812355 -60515992 + L1ME2 LINE L1 4930 6129 -35 623 150 9 35 chr4 141813350 141813463 -60514884 + MLT1A2 LTR MaLR 4 113 -261 584 215 15 8 chr4 141813466 141813596 -60514751 + MLT1A2 LTR MaLR 244 374 0 25 31 0 0 chr4 141813768 141813800 -60514547 + AT_rich Low_complexity Low_complexity 1 32 0 655 300 99 27 chr4 141814192 141814605 -60513742 + L1ME3 LINE L1 5466 5906 -256 191 103 26 0 chr4 141814998 141815037 -60513310 + (TA)n Simple_repeat Simple_repeat 1 40 0 1769 195 60 35 chr4 141815541 141815992 -60512355 - MLT1C LTR MaLR -3 464 3 21 89 0 0 chr4 141816008 141816064 -60512283 + AT_rich Low_complexity Low_complexity 1 56 0 419 307 89 15 chr4 141816733 141816935 -60511412 - MIR SINE MIR -4 258 42 31 0 0 0 chr4 141817211 141817242 -60511105 + AT_rich Low_complexity Low_complexity 1 31 0 207 146 0 0 chr4 141817934 141817975 -60510372 + (CA)n Simple_repeat Simple_repeat 2 42 0 181 405 66 16 chr4 141818285 141818406 -60509941 - L2 LINE L2 -216 3056 2930 515 299 68 18 chr4 141818617 141818838 -60509509 - L2 LINE L2 -239 3074 2843 200 302 0 0 chr4 141819151 141819214 -60509133 - L2 LINE L2 -667 2647 2585 21 0 0 0 chr4 141819342 141819363 -60508984 + AT_rich Low_complexity Low_complexity 1 21 0 794 268 47 35 chr4 141820171 141820514 -60507833 + L1MDa LINE L1 3056 3402 -3138 1637 230 26 29 chr4 141820556 141820973 -60507374 + MLT1C LTR MaLR 6 421 -46 1267 295 119 31 chr4 141821029 141821794 -60506553 + L1M4 LINE L1 126 957 -5585 202 374 45 11 chr4 141821968 141822147 -60506200 - L2 LINE L2 -1202 2112 1928 278 268 239 0 chr4 141822561 141822699 -60505648 - LTR50 LTR ERVL -142 653 483 2211 103 0 3 chr4 141822743 141823044 -60505303 + AluSg SINE Alu 1 300 -10 860 153 7 0 chr4 141824640 141824784 -60503563 + L1MA5 LINE L1 5625 5769 -531 1350 130 10 0 chr4 141824784 141824984 -60503363 + AluSg/x SINE Alu 90 291 -21 21 0 0 0 chr4 141824984 141825005 -60503342 + AT_rich Low_complexity Low_complexity 1 21 0 2986 141 10 8 chr4 141825015 141825525 -60502822 + L1MA5 LINE L1 5773 6283 -17 1054 278 33 49 chr4 141825552 141826001 -60502346 - L1ME1 LINE L1 -6 6160 5719 1479 256 55 24 chr4 141826102 141827026 -60501321 - L1ME1 LINE L1 -430 5736 4784 1954 175 0 22 chr4 141827189 141827544 -60500803 - MER7A DNA MER2_type 0 346 2 276 91 91 0 chr4 141827702 141827746 -60500601 + MER41C LTR ERV1 279 326 -228 1932 109 0 0 chr4 141827750 141828034 -60500313 - L1PA8 LINE L1 -2 6170 5887 969 306 74 35 chr4 141828192 141828965 -60499382 - L2 LINE L2 -18 3295 2476 299 274 0 0 chr4 141829568 141829641 -60498706 + MLT1I LTR MaLR 73 145 -264 246 152 49 189 chr4 141829767 141829931 -60498416 + MLT1E LTR MaLR 402 593 0 646 229 7 21 chr4 141830278 141830422 -60497925 + MER5A DNA MER1_type 3 144 -45 258 296 34 0 chr4 141830457 141830545 -60497802 - MIR SINE MIR -141 121 31 * 273 290 185 30 chr4 141830541 141830741 -60497606 - MIR SINE MIR -21 241 11 245 192 0 41 chr4 141831121 141831194 -60497153 + (TTTG)n Simple_repeat Simple_repeat 2 71 0 251 268 104 37 chr4 141831212 141831376 -60496971 + Charlie8 DNA MER1_type 91 265 -2152 664 263 110 10 chr4 141831407 141831616 -60496731 + MIR SINE MIR 33 262 0 229 276 38 38 chr4 141831691 141831796 -60496551 - LTR33 LTR ERVL -2 519 415 24 53 0 0 chr4 141832040 141832078 -60496269 + AT_rich Low_complexity Low_complexity 1 38 0 1660 196 18 6 chr4 141832169 141832351 -60495996 + MSTD LTR MaLR 1 190 -206 2121 107 3 3 chr4 141832351 141832641 -60495706 + AluSg SINE Alu 1 290 -20 1660 196 18 6 chr4 141832641 141832795 -60495552 + MSTD LTR MaLR 190 341 -55 5585 101 17 5 chr4 141884660 141885728 -60442619 - L1P3 LINE L1 -581 5591 4517 225 113 283 0 chr4 141885940 141885993 -60442354 + MER104 DNA Tc2 49 116 -64 181 184 0 0 chr4 141886090 141886128 -60442219 - MIR SINE MIR -62 146 109 374 218 218 8 chr4 141886733 141886857 -60441490 - MIR SINE MIR -20 242 93 22 35 0 0 chr4 141888195 141888224 -60440123 + AT_rich Low_complexity Low_complexity 1 29 0 1857 182 6 0 chr4 141888265 141888616 -60439731 - L1MA4 LINE L1 -8 6292 5940 579 237 19 19 chr4 141889108 141889264 -60439083 - MLT1F1 LTR MaLR 0 567 412 1545 186 36 37 chr4 141889374 141889850 -60438497 + MLT2A2 LTR ERVL 73 554 0 253 264 0 0 chr4 141889850 141889922 -60438425 - L1M4 LINE L1 -2380 4468 4397 274 217 17 0 chr4 141889962 141890022 -60438325 + L1M4 LINE L1 3521 3581 -2565 866 254 103 0 chr4 141890028 141890377 -60437970 + L1M4 LINE L1 4771 5155 -991 5844 176 82 13 chr4 141890378 141892041 -60436306 - L1M4 LINE L1 -3492 3356 1580 213 159 0 0 chr4 141892191 141892235 -60436112 + T-rich Low_complexity Low_complexity 2 45 0 446 336 72 10 chr4 141892292 141892584 -60435763 + L1 LINE L1 3185 3494 -2652 229 274 16 0 chr4 141894061 141894123 -60434224 + (CATA)n Simple_repeat Simple_repeat 4 66 0 1276 213 31 7 chr4 141894253 141894544 -60433803 + L1PA16 LINE L1 5853 6150 -16 1339 175 13 45 chr4 141894602 141895072 -60433275 - L1M1 LINE L1 -743 5403 5072 634 323 18 22 chr4 141895172 141895395 -60432952 - MER70B LTR ERVL -263 315 94 207 0 0 0 chr4 141895408 141895431 -60432916 + (A)n Simple_repeat Simple_repeat 1 23 0 656 210 7 36 chr4 141895437 141895575 -60432772 - MER70B LTR ERVL -444 134 1 8201 239 64 28 chr4 141895577 141896869 -60431478 + L1M1 LINE L1 3043 4287 -3278 1974 125 0 24 chr4 141896869 141897165 -60431182 + AluSx SINE Alu 1 289 -23 8201 239 64 28 chr4 141897165 141898672 -60429675 + L1M1 LINE L1 4287 5947 -1618 2769 239 27 38 chr4 141900742 141901452 -60426895 + L1PA15 LINE L1 1104 1805 -4982 1224 137 0 97 chr4 141901452 141901700 -60426647 - AluSg/x SINE Alu -8 304 81 409 171 0 0 chr4 141901800 141901870 -60426477 + AluJ/FRAM SINE Alu 227 296 -16 8966 219 69 57 chr4 141901870 141902282 -60426065 + L1PA15 LINE L1 1977 2383 -4414 385 101 29 0 chr4 141902282 141902351 -60425996 + AluSp/q SINE Alu 232 302 -1 8966 219 69 57 chr4 141902351 141904953 -60423394 + L1PA15 LINE L1 2383 5126 -1671 5757 130 10 0 chr4 141904953 141906259 -60422088 + L1PA15 LINE L1 5496 6811 -5 439 140 20 30 chr4 141906480 141906580 -60421767 - L1MA8 LINE L1 -1 6290 6192 24 53 0 0 chr4 141906611 141906649 -60421698 + AT_rich Low_complexity Low_complexity 1 38 0 287 380 81 33 chr4 141906668 141907416 -60420931 - L2 LINE L2 -32 3240 2455 6710 37 21 0 chr4 141907887 141909334 -60419013 + L1PA4 LINE L1 4667 6154 -1 359 350 47 47 chr4 141909691 141909743 -60418604 - L2 LINE L2 -2743 571 520 186 43 0 0 chr4 141909743 141909766 -60418581 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 359 350 47 47 chr4 141909766 141909967 -60418380 - L2 LINE L2 -2793 521 318 1876 191 106 53 chr4 141910234 141910742 -60417605 + MER101B LTR ERV1 1 535 -35 229 300 44 69 chr4 141911603 141911763 -60416584 - L2 LINE L2 -24 3289 3134 1695 242 49 13 chr4 141911937 141912388 -60415959 - MLT1C LTR MaLR 0 467 1 564 239 235 68 chr4 141912855 141913313 -60415034 + LTR27 LTR ERV1 1 1230 -18 297 75 0 0 chr4 141913690 141913730 -60414617 + (CA)n Simple_repeat Simple_repeat 1 40 0 27 49 0 0 chr4 141913818 141913859 -60414488 + AT_rich Low_complexity Low_complexity 1 41 0 1315 181 181 26 chr4 141914682 141915025 -60413322 - MSTD LTR MaLR 0 396 1 2293 104 0 0 chr4 141915718 141916015 -60412332 - AluSg SINE Alu -13 297 1 30 0 0 0 chr4 141916523 141916553 -60411794 + AT_rich Low_complexity Low_complexity 1 30 0 1663 204 22 45 chr4 141916974 141917377 -60410970 - MSTD LTR MaLR -2 394 1 215 386 8 16 chr4 141917555 141917682 -60410665 + MER5B DNA MER1_type 53 178 0 27 49 0 0 chr4 141918096 141918137 -60410210 + AT_rich Low_complexity Low_complexity 1 41 0 492 222 25 79 chr4 141918814 141918926 -60409421 + L1MCb LINE L1 1 99 -5946 1946 159 128 13 chr4 141918926 141919310 -60409037 - MSTA LTR MaLR 0 428 1 492 222 25 79 chr4 141919310 141919400 -60408947 + L1MCb LINE L1 99 192 -5853 982 83 0 0 chr4 141919502 141919622 -60408725 - AluSg SINE Alu -190 120 1 598 159 0 9 chr4 141919633 141919740 -60408607 + AluJo SINE Alu 124 229 -83 26 0 0 0 chr4 141920930 141920956 -60407391 + AT_rich Low_complexity Low_complexity 1 26 0 181 68 45 45 chr4 141921971 141922015 -60406332 + T-rich Low_complexity Low_complexity 4 47 0 22 0 0 0 chr4 141923168 141923190 -60405157 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr4 141924468 141924513 -60403834 + AT_rich Low_complexity Low_complexity 1 45 0 28 48 0 0 chr4 141925403 141925445 -60402902 + AT_rich Low_complexity Low_complexity 1 42 0 300 186 0 0 chr4 141927841 141927900 -60400447 + (CA)n Simple_repeat Simple_repeat 1 59 0 180 0 0 0 chr4 141928731 141928751 -60399596 + (A)n Simple_repeat Simple_repeat 1 20 0 193 0 61 30 chr4 141929974 141930007 -60398340 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr4 141930962 141930986 -60397361 + AT_rich Low_complexity Low_complexity 1 24 0 5625 251 23 10 chr4 141932846 141934070 -60394277 - L1M2 LINE L1 -5607 1242 3 745 260 27 56 chr4 141934082 141934437 -60393910 + L1ME1 LINE L1 5829 6331 -3 494 343 110 38 chr4 141934440 141935023 -60393324 + L2 LINE L2 1716 2340 -974 252 328 114 48 chr4 141935040 141935330 -60393017 + L2 LINE L2 2658 2966 -348 194 367 28 28 chr4 141935538 141935647 -60392700 + L2 LINE L2 3165 3273 -40 367 333 38 9 chr4 141935729 141935942 -60392405 + MIR SINE MIR 6 224 -38 8405 191 38 2 chr4 141936228 141937821 -60390526 + MSTA-int LTR MaLR 1 1651 0 2459 145 41 7 chr4 141937821 141938235 -60390112 + MSTA LTR MaLR 1 428 0 2211 133 112 20 chr4 141939111 141939503 -60388844 - MSTA LTR MaLR 0 428 1 9157 179 16 5 chr4 141939503 141941136 -60387211 - MSTA-int LTR MaLR 0 1651 1 2060 151 120 5 chr4 141941136 141941520 -60386827 - MSTA LTR MaLR 0 428 1 587 335 107 28 chr4 141941520 141941989 -60386358 + MLT1H1 LTR MaLR 50 555 0 431 259 171 44 chr4 141942026 141942231 -60386116 + MIR SINE MIR 29 259 -3 21 0 0 0 chr4 141942828 141942849 -60385498 + AT_rich Low_complexity Low_complexity 1 21 0 909 261 56 74 chr4 141944165 141944710 -60383637 + MER39 LTR ERV1 9 707 0 462 323 81 11 chr4 141944870 141945056 -60383291 + ERVL LTR ERVL 3671 3869 -1895 1916 193 20 51 chr4 141945564 141946016 -60382331 + MER31A LTR ERV1 48 485 0 1668 199 20 121 chr4 141948119 141948671 -60379676 - MLT1D LTR MaLR -7 498 3 305 244 15 89 chr4 141948888 141949023 -60379324 + L1ME3A LINE L1 99 223 -5982 403 266 121 64 chr4 141949633 141949915 -60378432 + L1ME3A LINE L1 829 1126 -5079 1280 222 60 68 chr4 141950685 141951099 -60377248 + Charlie1a DNA MER1_type 69 479 -976 1516 289 103 19 chr4 141951229 141952503 -60375844 + L1ME3A LINE L1 2120 3464 -2751 1605 289 120 40 chr4 141952518 141953286 -60375061 + L1ME3A LINE L1 3495 4200 -2015 744 176 8 0 chr4 141953286 141953417 -60374930 + FLAM_C SINE Alu 1 132 -1 1605 289 120 40 chr4 141953417 141954294 -60374053 + L1ME3A LINE L1 4200 5271 -944 1510 181 49 3 chr4 141954297 141954585 -60373762 + AluJo SINE Alu 3 303 -9 1544 262 70 48 chr4 141954689 141955567 -60372780 + L1ME3A LINE L1 5339 6235 -4 1418 288 93 9 chr4 141955580 141956233 -60372114 - Zaphod DNA AcHobo -3198 833 126 3833 201 58 0 chr4 141956258 141957085 -60371262 - MER63C DNA MER1_type -7 923 49 267 161 161 0 chr4 141957108 141957170 -60371177 - MER63C DNA MER1_type -857 73 2 270 270 45 22 chr4 141957306 141957395 -60370952 - MIR SINE MIR -152 110 20 2162 90 0 10 chr4 141958024 141958313 -60370034 + AluSc SINE Alu 1 286 -23 180 0 0 0 chr4 141958329 141958349 -60369998 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 618 291 94 5 chr4 141958359 141958572 -60369775 + MIR SINE MIR 31 262 0 232 306 41 16 chr4 141958624 141958745 -60369602 + L1M4 LINE L1 4516 4639 -1507 22 0 0 0 chr4 141958919 141958941 -60369406 + AT_rich Low_complexity Low_complexity 1 22 0 397 326 49 33 chr4 141959354 141959599 -60368748 + MLT1K LTR MaLR 195 443 -145 617 333 108 8 chr4 141959874 141960274 -60368073 - MLT1J1 LTR MaLR -2 444 5 358 315 84 29 chr4 141961408 141961681 -60366666 + L1ME LINE L1 3279 3566 -2580 381 268 60 67 chr4 141961899 141962183 -60366164 + L1M4 LINE L1 3881 4162 -1984 439 329 74 31 chr4 141962248 141962665 -60365682 + L1M4 LINE L1 4252 4686 -1460 474 185 12 0 chr4 141962669 141962750 -60365597 - AluJ/FLAM SINE Alu -228 84 3 5976 96 15 0 chr4 141962761 141963919 -60364428 - L1PA13 LINE L1 0 6163 4995 739 286 80 47 chr4 141964303 141964944 -60363403 + L1ME LINE L1 3656 4317 -1829 235 188 21 0 chr4 141965060 141965108 -60363239 + (TA)n Simple_repeat Simple_repeat 1 49 0 421 328 85 8 chr4 141965113 141965360 -60362987 + L1ME LINE L1 5386 5651 -470 246 274 13 105 chr4 141965422 141965575 -60362772 - L2 LINE L2 -21 3292 3154 715 259 46 53 chr4 141965989 141966251 -60362096 - MIR SINE MIR -1 261 2 647 286 0 11 chr4 141967821 141967999 -60360348 + FAM SINE Alu 1 46 -3 205 267 0 67 chr4 141968058 141968118 -60360229 - L2 LINE L2 -9 3263 3208 1668 204 118 27 chr4 141969221 141969697 -60358650 + Charlie1b DNA MER1_type 1 519 -4 1501 162 87 39 chr4 141970274 141970632 -60357715 + THE1C LTR MaLR 1 375 0 22 56 0 0 chr4 141970642 141970678 -60357669 + AT_rich Low_complexity Low_complexity 1 36 0 269 148 37 37 chr4 141970965 141971006 -60357341 + (TAAA)n Simple_repeat Simple_repeat 4 44 -40 4430 168 18 43 chr4 141971006 141971565 -60356782 + L1MC1 LINE L1 5427 5955 -378 2333 86 0 16 chr4 141971565 141971879 -60356468 + AluSg SINE Alu 1 309 -1 4430 168 18 43 chr4 141971879 141972247 -60356100 + L1MC1 LINE L1 5955 6331 -2 269 148 37 37 chr4 141972247 141972263 -60356084 + (TAAA)n Simple_repeat Simple_repeat 44 59 -25 419 118 0 0 chr4 141972263 141972331 -60356016 + L1MC2 LINE L1 6266 6333 -11 269 148 37 37 chr4 141972331 141972353 -60355994 + (TAAA)n Simple_repeat Simple_repeat 58 84 0 26 64 0 0 chr4 141973689 141973736 -60354611 + AT_rich Low_complexity Low_complexity 1 47 0 320 225 65 65 chr4 141974336 141974474 -60353873 + MLT1L LTR MaLR 152 289 -326 21 71 0 0 chr4 141974747 141974789 -60353558 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr4 141974918 141974946 -60353401 + AT_rich Low_complexity Low_complexity 1 28 0 264 258 21 32 chr4 141975290 141975383 -60352964 + L1ME3A LINE L1 4114 4205 -1941 733 276 83 59 chr4 141975523 141976563 -60351784 + L1ME3A LINE L1 4433 5494 -670 696 269 97 15 chr4 141976640 141976971 -60351376 + L1ME3A LINE L1 5607 5964 -206 34 24 0 0 chr4 141977569 141977610 -60350737 + AT_rich Low_complexity Low_complexity 1 41 0 191 262 0 66 chr4 141977633 141977694 -60350653 - L2 LINE L2 -1038 2276 2220 21 57 0 0 chr4 141978196 141978231 -60350116 + AT_rich Low_complexity Low_complexity 1 35 0 2326 50 0 3 chr4 141979993 141980313 -60348034 + AluY SINE Alu 1 319 0 434 311 24 24 chr4 141980828 141980992 -60347355 + MIR3 SINE MIR 42 205 -3 663 293 145 16 chr4 141981127 141981354 -60346993 + L2 LINE L2 2969 3246 -67 213 39 0 0 chr4 141981354 141981380 -60346967 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 663 293 145 16 chr4 141981380 141981456 -60346891 + L2 LINE L2 3246 3311 -2 923 213 14 24 chr4 141981595 141981806 -60346541 + MER3 DNA MER1_type 1 209 0 278 319 80 65 chr4 141981810 141982086 -60346261 - L2 LINE L2 -527 2787 2508 22 0 0 0 chr4 141982228 141982250 -60346097 + AT_rich Low_complexity Low_complexity 1 22 0 380 20 0 20 chr4 141982416 141982424 -60345923 + (CA)n Simple_repeat Simple_repeat 1 56 0 380 20 0 20 chr4 141982424 141982474 -60345873 + (CA)n Simple_repeat Simple_repeat 2 50 0 22 70 0 0 chr4 141983688 141983731 -60344616 + AT_rich Low_complexity Low_complexity 1 43 0 2215 125 0 0 chr4 141984315 141984620 -60343727 + AluSx SINE Alu 2 306 -6 183 300 146 9 chr4 141984927 141985037 -60343310 + MIR SINE MIR 37 161 -101 274 259 67 77 chr4 141985520 141985851 -60342496 + L1ME3A LINE L1 5103 5424 -740 306 240 320 0 chr4 141985851 141985951 -60342396 + FLAM_A SINE Alu 1 132 -1 274 259 67 77 chr4 141985951 141986106 -60342241 + L1ME3A LINE L1 5424 5579 -585 294 300 50 118 chr4 141986240 141986620 -60341727 + L1ME3A LINE L1 5802 6155 -15 1032 227 94 85 chr4 141986665 141987123 -60341224 + MLT1C LTR MaLR 6 467 0 377 273 150 27 chr4 141987136 141987356 -60340991 + MIR SINE MIR 1 247 -15 525 330 69 25 chr4 141990005 141990453 -60337894 + MLT1J LTR MaLR 32 499 -12 22 0 0 0 chr4 141990804 141990826 -60337521 + AT_rich Low_complexity Low_complexity 1 22 0 2193 286 112 45 chr4 141991796 141993472 -60334875 + HAL1 LINE L1 618 2404 -103 21 0 0 0 chr4 141994033 141994054 -60334293 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr4 141995459 141995493 -60332854 + AT_rich Low_complexity Low_complexity 1 34 0 28 61 0 0 chr4 141995730 141995779 -60332568 + AT_rich Low_complexity Low_complexity 1 49 0 210 163 0 23 chr4 141996167 141996210 -60332137 + (TAAG)n Simple_repeat Simple_repeat 2 43 0 292 244 154 85 chr4 141997128 141997329 -60331018 + L2 LINE L2 3099 3313 0 2368 81 0 0 chr4 141998361 141998659 -60329688 + AluSg SINE Alu 1 298 -12 794 161 0 0 chr4 141998684 141998802 -60329545 + FLAM_C SINE Alu 1 118 -15 180 111 0 0 chr4 142000021 142000048 -60328299 + (CGGGGG)n Simple_repeat Simple_repeat 4 30 0 297 365 9 0 chr4 142003196 142003303 -60325044 - MIR SINE MIR -68 140 33 21 71 0 0 chr4 142006056 142006098 -60322249 + AT_rich Low_complexity Low_complexity 1 42 0 949 165 92 0 chr4 142007331 142007495 -60320852 + L1PB4 LINE L1 5965 6143 -13 22 0 0 0 chr4 142009089 142009111 -60319236 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr4 142009260 142009292 -60319055 + AT_rich Low_complexity Low_complexity 1 32 0 48 18 0 0 chr4 142009531 142009586 -60318761 + AT_rich Low_complexity Low_complexity 1 55 0 22 0 0 0 chr4 142012200 142012222 -60316125 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 142012571 142012595 -60315752 + AT_rich Low_complexity Low_complexity 1 24 0 584 218 6 0 chr4 142012761 142012935 -60315412 + (TA)n Simple_repeat Simple_repeat 2 176 0 2246 113 0 3 chr4 142013683 142013992 -60314355 - AluSq SINE Alu -5 308 1 21 71 0 0 chr4 142014726 142014768 -60313579 + AT_rich Low_complexity Low_complexity 1 42 0 40 0 0 0 chr4 142015758 142015798 -60312549 + AT_rich Low_complexity Low_complexity 1 40 0 294 95 0 0 chr4 142016972 142017014 -60311333 + (CA)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr4 142018423 142018444 -60309903 + AT_rich Low_complexity Low_complexity 1 21 0 547 225 40 29 chr4 142020781 142020954 -60307393 - MER112 DNA MER1_type -85 175 1 325 310 62 23 chr4 142021020 142021149 -60307198 + MIR SINE MIR 97 230 -32 3914 132 9 72 chr4 142021153 142021890 -60306457 - LTR8 LTR ERV1 0 691 1 342 0 0 0 chr4 142023013 142023051 -60305296 + (TG)n Simple_repeat Simple_repeat 1 38 0 1613 161 3 34 chr4 142024041 142024372 -60303975 + AluJb SINE Alu 2 323 0 438 20 0 0 chr4 142024805 142024856 -60303491 + (TTA)n Simple_repeat Simple_repeat 2 52 0 2178 69 0 4 chr4 142024860 142025136 -60303211 - AluY SINE Alu -31 280 6 990 173 51 50 chr4 142026296 142026592 -60301755 - LTR53 LTR ERVL -3 516 163 2368 86 3 0 chr4 142026592 142026894 -60301453 + AluSp SINE Alu 2 304 -9 990 173 51 50 chr4 142026894 142027048 -60301299 - LTR53 LTR ERVL -356 163 11 3771 265 47 8 chr4 142027305 142028268 -60300079 - LTR52-int LTR ERVL -2387 3298 2299 658 248 7 0 chr4 142028349 142028494 -60299853 - LTR52-int LTR ERVL -2617 939 794 298 238 32 0 chr4 142028582 142028645 -60299702 + tRNA-Met-i tRNA tRNA 8 72 -3 2352 189 48 10 chr4 142029748 142030244 -60298103 - LTR53 LTR ERVL 0 519 5 750 257 83 38 chr4 142030446 142030894 -60297453 - HAL1 LINE L1 -1053 1454 987 1614 302 88 31 chr4 142030953 142031757 -60296590 - HAL1 LINE L1 -1626 881 32 25 0 0 0 chr4 142031978 142032003 -60296344 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr4 142032729 142032752 -60295595 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 142032935 142032963 -60295384 + AT_rich Low_complexity Low_complexity 1 28 0 243 113 25 100 chr4 142034373 142034453 -60293894 + T-rich Low_complexity Low_complexity 3 76 0 26 50 0 0 chr4 142036917 142036957 -60291390 + AT_rich Low_complexity Low_complexity 1 40 0 1822 121 55 7 chr4 142037095 142037384 -60290963 - AluY SINE Alu -6 305 3 635 264 63 34 chr4 142038434 142038847 -60289500 - L1MC5 LINE L1 -34 7927 7503 * 660 238 14 90 chr4 142038829 142039119 -60289228 - L1ME3A LINE L1 -1 6169 5902 491 333 91 15 chr4 142039575 142039914 -60288433 + L3b LINE CR1 1119 1483 -100 31 58 0 0 chr4 142041005 142041057 -60287290 + AT_rich Low_complexity Low_complexity 1 52 0 553 306 104 0 chr4 142042634 142042856 -60285491 + MIR SINE MIR 8 252 -10 2326 91 3 0 chr4 142044635 142044942 -60283405 - AluSp SINE Alu -3 310 3 263 362 69 80 chr4 142045884 142046246 -60282101 + L2 LINE L2 2915 3272 0 21 57 0 0 chr4 142047064 142047099 -60281248 + AT_rich Low_complexity Low_complexity 1 35 0 474 167 10 0 chr4 142047913 142048009 -60280338 + MER53 DNA DNA 93 189 0 28 48 0 0 chr4 142049345 142049387 -60278960 + AT_rich Low_complexity Low_complexity 1 42 0 195 184 0 0 chr4 142049748 142049786 -60278561 + (CATA)n Simple_repeat Simple_repeat 3 40 0 23 33 0 0 chr4 142050384 142050414 -60277933 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 142050445 142050468 -60277879 + AT_rich Low_complexity Low_complexity 1 23 0 1713 157 42 0 chr4 142050749 142051036 -60277311 + AluSx SINE Alu 1 299 -13 22 35 0 0 chr4 142051040 142051069 -60277278 + AT_rich Low_complexity Low_complexity 1 29 0 560 148 26 0 chr4 142051071 142051226 -60277121 + (TA)n Simple_repeat Simple_repeat 2 160 0 258 148 0 0 chr4 142051552 142051606 -60276741 + (TA)n Simple_repeat Simple_repeat 2 55 0 325 390 114 8 chr4 142051808 142052185 -60276162 + L3b LINE CR1 1114 1530 -53 32 43 0 0 chr4 142052290 142052336 -60276011 + AT_rich Low_complexity Low_complexity 1 46 0 1703 192 0 0 chr4 142053129 142053426 -60274921 - AluSx SINE Alu -15 297 1 697 251 98 55 chr4 142053537 142053863 -60274484 - MER2 DNA MER2_type -3 341 2 1597 186 3 0 chr4 142108649 142108999 -60219348 - HERVH LTR ERV1 -6775 938 609 326 89 0 0 chr4 142109001 142109046 -60219301 + tRNA-Gln-CAG tRNA tRNA 9 53 -22 2641 75 123 0 chr4 142109060 142109459 -60218888 - LTR7 LTR ERV1 -2 448 1 378 167 15 0 chr4 142109460 142109526 -60218821 - LTR49 LTR ERV1 -27 568 502 581 285 97 0 chr4 142109535 142109742 -60218605 - LTR29 LTR ERV1 -228 394 168 277 299 39 0 chr4 142109725 142109802 -60218545 - LTR48 LTR ERV1 -553 234 155 * 1975 128 40 73 chr4 142110301 142110753 -60217594 - LTR23 LTR ERV1 0 437 1 1862 175 22 53 chr4 142110785 142111196 -60217151 + MER57A LTR ERV1 6 403 0 27 62 0 0 chr4 142112433 142112481 -60215866 + AT_rich Low_complexity Low_complexity 1 48 0 25 0 0 0 chr4 142112929 142112954 -60215393 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr4 142113575 142113603 -60214744 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 142114777 142114803 -60213544 + AT_rich Low_complexity Low_complexity 1 26 0 304 221 100 0 chr4 142115419 142115513 -60212834 - L1MC/D LINE L1 -615 5547 5440 1047 343 81 29 chr4 142115551 142116129 -60212218 + L1PA13 LINE L1 789 1396 -6178 397 270 0 0 chr4 142116253 142116342 -60212005 + L1PA13 LINE L1 2085 2173 -5408 4586 247 10 7 chr4 142116599 142117933 -60210414 + L1PA13 LINE L1 2264 3613 -3971 28 0 0 0 chr4 142117963 142117991 -60210356 + AT_rich Low_complexity Low_complexity 1 28 0 187 368 72 20 chr4 142118408 142118560 -60209787 - L2 LINE L2 -404 2910 2751 312 313 30 30 chr4 142119227 142119361 -60208986 - L2 LINE L2 -660 2654 2521 315 370 14 0 chr4 142119396 142119542 -60208805 - HERVL LTR ERVL -3418 2236 2089 1052 260 60 24 chr4 142119544 142120062 -60208285 - LTR40a LTR ERVL -2 517 35 339 262 66 33 chr4 142120065 142120187 -60208160 - L1MEc LINE L1 -4648 1748 1623 542 294 101 3 chr4 142120228 142120595 -60207752 - L1MEc LINE L1 -4873 1523 1121 * 1179 283 75 29 chr4 142120594 142121075 -60207272 - L1MEc LINE L1 -5844 552 50 431 278 54 58 chr4 142121095 142121318 -60207029 - LTR16A1 LTR ERVL 0 457 236 781 108 19 19 chr4 142121323 142121433 -60206914 - LTR12 LTR ERV1 -23 691 583 3374 149 39 131 chr4 142121433 142122339 -60206008 - LTR12 LTR ERV1 0 826 5 781 108 19 19 chr4 142122339 142122374 -60205973 - LTR12 LTR ERV1 -131 583 106 * 2883 165 11 25 chr4 142122354 142122967 -60205380 - pTR5 LTR ERV1 -1093 1345 741 249 317 39 10 chr4 142123123 142123227 -60205120 - LTR16A1 LTR ERVL -350 107 1 26 30 0 0 chr4 142123866 142123899 -60204448 + AT_rich Low_complexity Low_complexity 1 33 0 356 253 11 88 chr4 142124252 142124434 -60203913 + MER112 DNA MER1_type 1 168 -92 188 323 31 0 chr4 142125251 142125316 -60203031 + L2 LINE L2 3246 3312 -1 2230 104 0 7 chr4 142126869 142127166 -60201181 + AluSx SINE Alu 1 295 -17 230 164 62 41 chr4 142127315 142127461 -60200886 + (TAA)n Simple_repeat Simple_repeat 1 149 0 1958 246 126 16 chr4 142127614 142128196 -60200151 + Looper DNA T2_type 1 710 -848 962 196 58 64 chr4 142128196 142128522 -60199825 + MER33 DNA MER1_type 1 324 0 1958 246 126 16 chr4 142128522 142128804 -60199543 + Looper DNA T2_type 710 960 -598 530 209 52 7 chr4 142128809 142128962 -60199385 + Looper DNA T2_type 1395 1554 -4 25 51 0 0 chr4 142128985 142129024 -60199323 + AT_rich Low_complexity Low_complexity 1 39 0 354 298 77 44 chr4 142129026 142129207 -60199140 - MLT1J LTR MaLR -322 189 3 1371 174 34 34 chr4 142130685 142130979 -60197368 + AluJb SINE Alu 1 294 -18 237 313 71 60 chr4 142131278 142131460 -60196887 + MIR SINE MIR 13 196 -66 2215 83 3 14 chr4 142132031 142132321 -60196026 + AluY SINE Alu 1 287 -24 206 282 8 57 chr4 142132857 142132981 -60195366 + GA-rich Low_complexity Low_complexity 6 123 0 1257 201 18 90 chr4 142133124 142133457 -60194890 - AluJo SINE Alu -3 309 1 2163 126 0 3 chr4 142133600 142133893 -60194454 + AluSg SINE Alu 1 292 -18 218 256 13 26 chr4 142134679 142134757 -60193590 + T-rich Low_complexity Low_complexity 3 79 0 230 111 97 0 chr4 142135764 142135836 -60192511 + (TA)n Simple_repeat Simple_repeat 2 80 0 22 35 0 0 chr4 142135878 142135907 -60192440 + AT_rich Low_complexity Low_complexity 1 29 0 2309 95 3 0 chr4 142136149 142136455 -60191892 + AluSg SINE Alu 1 307 -3 41 78 0 0 chr4 142137892 142137982 -60190365 + AT_rich Low_complexity Low_complexity 1 90 0 378 291 16 29 chr4 142138145 142138293 -60190054 - MIR SINE MIR -41 167 26 2484 34 7 3 chr4 142138375 142138668 -60189679 - AluY SINE Alu -17 294 1 1272 161 19 11 chr4 142139225 142139492 -60188855 - MER4B LTR ERV1 0 610 264 15226 116 89 57 chr4 142139575 142143600 -60184747 - MER4A-int LTR ERV1 -2 6596 987 2017 117 3 20 chr4 142143647 142143945 -60184402 - AluSg SINE Alu -17 293 1 1150 107 121 76 chr4 142143945 142144270 -60184077 - MER4A-int LTR ERV1 -4272 1286 503 307 137 0 0 chr4 142144268 142144319 -60184028 - MER4A-int LTR ERV1 -5712 886 836 * 2557 105 96 19 chr4 142144447 142144994 -60183353 - MER4A-int LTR ERV1 -5966 632 1 1371 138 7 118 chr4 142144997 142145294 -60183053 - MER4A LTR ERV1 0 664 401 296 70 394 14 chr4 142145327 142145398 -60182949 - MER4A LTR ERV1 -566 98 1 366 230 0 0 chr4 142145485 142145559 -60182788 + MIR SINE MIR 84 157 -105 2521 68 133 0 chr4 142145572 142145954 -60182393 - LTR7 LTR ERV1 -17 433 1 2332 101 50 13 chr4 142145954 142146330 -60182017 - HERVH LTR ERV1 0 7713 7324 1325 128 0 0 chr4 142146330 142146526 -60181821 - HERVH LTR ERV1 -1894 5819 5624 3919 129 82 2 chr4 142146562 142147175 -60181172 - HERVH LTR ERV1 -2564 5149 4488 5730 97 14 2 chr4 142147177 142148021 -60180326 - HERVH LTR ERV1 -3720 3993 3140 * 14598 106 7 21 chr4 142148015 142150308 -60178039 - HERVH LTR ERV1 -4726 2987 727 230 309 10 37 chr4 142150418 142150589 -60177758 + CT-rich Low_complexity Low_complexity 6 286 0 25 51 0 0 chr4 142151175 142151214 -60177133 + AT_rich Low_complexity Low_complexity 1 39 0 3633 139 9 49 chr4 142151276 142151781 -60176566 - MER39B LTR ERV1 -1 652 179 2698 85 18 0 chr4 142151781 142152168 -60176179 - L1PA10 LINE L1 -3 6165 5772 3633 139 9 49 chr4 142152168 142152339 -60176008 - MER39B LTR ERV1 -474 179 3 1177 255 95 62 chr4 142152346 142153126 -60175221 - L1ME3A LINE L1 -98 6072 5267 1178 269 100 38 chr4 142153258 142153802 -60174545 - MLT1G LTR MaLR -43 547 7 820 302 81 57 chr4 142153842 142154600 -60173747 - L1MEd LINE L1 -4906 1213 438 648 324 36 33 chr4 142154660 142154993 -60173354 - L1MEd LINE L1 -5784 335 2 2208 96 0 0 chr4 142155248 142155552 -60172795 - AluY SINE Alu 0 304 1 4339 88 43 7 chr4 142155655 142156737 -60171610 - MER11A LTR ERVK 0 1266 1 199 390 55 49 chr4 142157108 142157296 -60171051 + L3 LINE CR1 1209 1401 -176 2196 108 3 0 chr4 142157296 142157592 -60170755 + AluSx SINE Alu 1 297 -15 199 390 55 49 chr4 142157592 142157747 -60170600 + L3 LINE CR1 1401 1554 -23 276 231 13 13 chr4 142157773 142157851 -60170496 - MLT1E LTR MaLR 0 593 516 945 299 85 38 chr4 142157854 142158618 -60169729 - L1ME3A LINE L1 -143 6027 5300 2161 110 0 10 chr4 142158618 142158919 -60169428 - AluSc SINE Alu -11 298 1 945 299 85 38 chr4 142158919 142160018 -60168329 - L1ME3A LINE L1 -870 5300 4028 609 297 114 55 chr4 142160153 142160609 -60167738 + MLT1H1 LTR MaLR 13 478 -64 2321 70 0 0 chr4 142160609 142160894 -60167453 - AluY SINE Alu -26 285 1 609 297 114 55 chr4 142160894 142160956 -60167391 + MLT1H1 LTR MaLR 478 535 -7 205 140 0 70 chr4 142161063 142161120 -60167227 + (TATAA)n Simple_repeat Simple_repeat 2 54 0 290 272 39 0 chr4 142161154 142161334 -60167013 - L1ME3A LINE L1 -3829 2317 2131 183 80 0 0 chr4 142161337 142161362 -60166985 + (TG)n Simple_repeat Simple_repeat 2 26 0 235 341 23 31 chr4 142161754 142161883 -60166464 - MIR SINE MIR -6 256 129 5647 127 16 7 chr4 142162252 142163571 -60164776 - L1PA15 LINE L1 0 6165 4843 35 92 0 0 chr4 142163606 142163704 -60164643 + AT_rich Low_complexity Low_complexity 1 98 0 26 0 0 0 chr4 142164556 142164582 -60163765 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 142167197 142167219 -60161128 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 142167330 142167360 -60160987 + AT_rich Low_complexity Low_complexity 1 30 0 317 250 33 8 chr4 142168272 142168392 -60159955 + (TA)n Simple_repeat Simple_repeat 1 123 0 189 172 47 0 chr4 142168439 142168503 -60159844 + (TA)n Simple_repeat Simple_repeat 2 68 0 420 209 0 0 chr4 142168553 142168644 -60159703 + (TA)n Simple_repeat Simple_repeat 1 91 0 21 36 0 0 chr4 142170659 142170687 -60157660 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 142171287 142171311 -60157036 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr4 142171714 142171749 -60156598 + AT_rich Low_complexity Low_complexity 1 35 0 390 277 102 40 chr4 142172443 142172620 -60155727 - MIR SINE MIR -27 235 48 309 217 0 0 chr4 142172855 142172938 -60155409 + (TATATG)n Simple_repeat Simple_repeat 6 88 0 209 338 68 27 chr4 142173420 142173568 -60154779 + MIR SINE MIR 40 193 -69 412 324 138 0 chr4 142173624 142173769 -60154578 - MIR SINE MIR -21 241 77 27 29 0 0 chr4 142174381 142174415 -60153932 + AT_rich Low_complexity Low_complexity 1 34 0 315 345 17 9 chr4 142174623 142174739 -60153608 + L2 LINE L2 3191 3307 -6 2050 128 23 0 chr4 142177159 142177285 -60151062 + AluSq SINE Alu 1 123 -190 306 0 0 0 chr4 142177285 142177319 -60151028 + (CA)n Simple_repeat Simple_repeat 2 35 0 2050 128 23 0 chr4 142177319 142177496 -60150851 + AluSq SINE Alu 123 311 -2 30 0 0 0 chr4 142177589 142177619 -60150728 + AT_rich Low_complexity Low_complexity 1 30 0 2007 122 0 14 chr4 142178678 142178972 -60149375 + AluSx SINE Alu 1 290 -22 864 53 26 0 chr4 142178988 142179102 -60149245 + L1PA5 LINE L1 6035 6151 -3 26 50 0 0 chr4 142179643 142179683 -60148664 + AT_rich Low_complexity Low_complexity 1 40 0 2177 158 60 53 chr4 142180949 142180990 -60147357 - L1MA9 LINE L1 0 7333 7294 201 74 0 0 chr4 142180990 142181017 -60147330 + (TA)n Simple_repeat Simple_repeat 1 27 0 2177 158 60 53 chr4 142181017 142181174 -60147173 - L1MA9 LINE L1 -39 7294 7140 1251 202 89 37 chr4 142181174 142181501 -60146846 + MER2 DNA MER2_type 1 344 0 2177 158 60 53 chr4 142181501 142181814 -60146533 - L1MA9 LINE L1 -193 7140 6817 191 108 65 43 chr4 142181824 142181917 -60146430 + (TA)n Simple_repeat Simple_repeat 2 96 0 207 246 36 36 chr4 142181919 142182086 -60146261 + (TTATA)n Simple_repeat Simple_repeat 5 171 0 * 220 170 78 35 chr4 142181962 142182103 -60146244 + (ATATG)n Simple_repeat Simple_repeat 4 150 0 1484 189 28 22 chr4 142182150 142182472 -60145875 - L1MA9 LINE L1 -524 6809 6486 1944 194 32 28 chr4 142182474 142183022 -60145325 + MLT2A2 LTR ERVL 1 554 0 3222 193 135 27 chr4 142183024 142183110 -60145237 - L1MA9 LINE L1 -703 6486 6411 2126 125 0 0 chr4 142183110 142183398 -60144949 - AluSx SINE Alu -24 288 1 3222 193 135 27 chr4 142183398 142184358 -60143989 - L1MA9 LINE L1 -778 6411 5321 * 6264 40 5 3 chr4 142184352 142185118 -60143229 - L1PA4 LINE L1 0 6155 5388 3619 223 56 34 chr4 142185110 142186211 -60142136 - L1MA9 LINE L1 -1830 5337 4212 * 1454 249 94 21 chr4 142186228 142187091 -60141256 - L1MA9 LINE L1 -3418 3749 2767 1166 299 62 21 chr4 142187087 142187655 -60140692 - L1MA9 LINE L1 -4966 2202 1612 * 306 393 42 27 chr4 142188216 142188478 -60139869 - L1MA9 LINE L1 -5707 1391 1126 2115 117 7 0 chr4 142189258 142189557 -60138790 - AluY SINE Alu -10 301 1 27 29 0 0 chr4 142189637 142189671 -60138676 + AT_rich Low_complexity Low_complexity 1 34 0 333 320 69 49 chr4 142189965 142190412 -60137935 - L1M4 LINE L1 -1485 4661 4206 22 0 0 0 chr4 142190793 142190815 -60137532 + AT_rich Low_complexity Low_complexity 1 22 0 53 81 0 0 chr4 142191129 142191252 -60137095 + AT_rich Low_complexity Low_complexity 1 123 0 23 0 0 0 chr4 142191429 142191452 -60136895 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr4 142192770 142192792 -60135555 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 21 0 0 0 chr4 142193022 142193043 -60135304 + AT_rich Low_complexity Low_complexity 1 21 0 560 200 55 0 chr4 142194136 142194246 -60134101 - FLAM_A SINE Alu -17 116 1 202 146 0 24 chr4 142194497 142194538 -60133809 + (TTATA)n Simple_repeat Simple_repeat 5 44 0 192 97 0 0 chr4 142194653 142194684 -60133663 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr4 142195602 142195631 -60132716 + AT_rich Low_complexity Low_complexity 1 29 0 1924 202 151 10 chr4 142195782 142196291 -60132056 - L1MC2 LINE L1 -22 6322 5742 759 161 0 0 chr4 142196287 142196411 -60131936 + L1MC2 LINE L1 5609 5732 -601 * 30 0 0 0 chr4 142196442 142196472 -60131875 + AT_rich Low_complexity Low_complexity 1 30 0 763 286 64 0 chr4 142196482 142196716 -60131631 - L1MC2 LINE L1 -598 5761 5513 633 177 18 0 chr4 142196757 142196870 -60131477 - AluSq/x SINE Alu -196 117 3 553 245 60 71 chr4 142196924 142197122 -60131225 - L1MC2 LINE L1 -743 5403 5300 1523 174 14 7 chr4 142197122 142197409 -60130938 - AluJo SINE Alu -8 304 16 553 245 60 71 chr4 142197409 142197583 -60130764 - L1MC2 LINE L1 -846 5300 5126 272 272 103 0 chr4 142197655 142197791 -60130556 + L1ME LINE L1 5732 5881 -240 185 337 174 0 chr4 142199207 142199299 -60129048 - MIR SINE MIR -41 221 114 2059 116 33 3 chr4 142199780 142200082 -60128265 - AluSq SINE Alu -2 311 1 233 383 0 0 chr4 142201435 142201516 -60126831 + L2 LINE L2 2735 2815 -499 22 0 0 0 chr4 142201662 142201684 -60126663 + AT_rich Low_complexity Low_complexity 1 22 0 3121 165 66 9 chr4 142201685 142202149 -60126198 - L1MB2 LINE L1 -3 6168 5657 2231 121 0 0 chr4 142202149 142202456 -60125891 - AluSc SINE Alu -2 307 1 3121 165 66 9 chr4 142202456 142202627 -60125720 - L1MB2 LINE L1 -514 5657 5497 186 43 0 0 chr4 142203405 142203428 -60124919 + (TG)n Simple_repeat Simple_repeat 2 24 0 1214 121 6 0 chr4 142203790 142203964 -60124383 - AluSg/x SINE Alu -4 308 134 28 0 0 0 chr4 142203970 142203998 -60124349 + AT_rich Low_complexity Low_complexity 1 28 0 1523 53 5 29 chr4 142205066 142205275 -60123072 + L1PA8 LINE L1 5956 6159 -13 237 284 15 0 chr4 142205415 142205482 -60122865 - MIR SINE MIR -60 202 135 3467 114 7 22 chr4 142205586 142205778 -60122569 + L1PB2 LINE L1 5605 5798 -353 315 0 0 0 chr4 142205778 142205813 -60122534 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 3467 114 7 22 chr4 142205813 142206173 -60122174 + L1PB2 LINE L1 5798 6149 -2 2088 128 35 44 chr4 142206571 142206938 -60121409 - THE1B LTR MaLR 0 364 1 2221 165 34 14 chr4 142206993 142207411 -60120936 - MSTB LTR MaLR 0 426 1 22 0 0 0 chr4 142208170 142208192 -60120155 + AT_rich Low_complexity Low_complexity 1 22 0 299 362 17 9 chr4 142208206 142208322 -60120025 + L2 LINE L2 3197 3313 0 8244 84 11 7 chr4 142208346 142210316 -60118031 - L1PA7 LINE L1 -5 6149 4175 8318 130 21 37 chr4 142210316 142212592 -60115755 - L1PA7 LINE L1 -2773 3373 12 13701 186 29 13 chr4 142212907 142216625 -60111722 - L1PA13 LINE L1 -4 6159 2396 10340 222 43 25 chr4 142217378 142221235 -60107112 - L1MB1 LINE L1 -1 5991 2084 443 235 171 6 chr4 142221251 142221421 -60106926 - L1MB1 LINE L1 -3943 2029 1832 4077 265 65 25 chr4 142221426 142223109 -60105238 - L1MB1 LINE L1 -4464 1506 1 21 0 0 0 chr4 142223136 142223157 -60105190 + AT_rich Low_complexity Low_complexity 1 21 0 318 246 136 55 chr4 142223226 142223425 -60104922 - HAL1 LINE L1 0 2507 2293 692 316 42 49 chr4 142223425 142223592 -60104755 - HAL1 LINE L1 -439 2068 1901 440 273 68 54 chr4 142223592 142223797 -60104550 - MER63A DNA MER1_type -1 209 2 692 316 42 49 chr4 142223797 142224079 -60104268 - HAL1 LINE L1 -606 1901 1622 1479 68 0 0 chr4 142224996 142225187 -60103160 + L1PB1 LINE L1 5954 6144 -7 1042 242 79 46 chr4 142225255 142225623 -60102724 + MLT1B LTR MaLR 11 390 0 498 260 181 56 chr4 142225667 142226009 -60102338 + HAL1 LINE L1 791 1175 -1332 30 36 0 18 chr4 142226626 142226644 -60101703 + AT_rich Low_complexity Low_complexity 1 18 -36 1492 173 58 36 chr4 142226644 142226921 -60101426 + AluJb SINE Alu 3 285 -27 30 36 0 18 chr4 142226921 142226957 -60101390 + AT_rich Low_complexity Low_complexity 18 54 0 634 141 33 221 chr4 142227306 142227519 -60100828 - Tigger3(Golem) DNA MER2_type -165 2864 2 200 111 0 28 chr4 142227872 142227908 -60100439 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 1403 306 115 29 chr4 142229428 142230528 -60097819 + L2 LINE L2 2121 3313 0 23 68 0 0 chr4 142231552 142231596 -60096751 + AT_rich Low_complexity Low_complexity 1 44 0 381 300 128 31 chr4 142232877 142233167 -60095180 + L1M4 LINE L1 3070 3387 -2759 3369 296 91 65 chr4 142233274 142233659 -60094688 + L2 LINE L2 781 1154 -2159 2032 201 40 42 chr4 142233659 142234132 -60094215 + MER70A LTR ERVL 1 472 0 3369 296 91 65 chr4 142234132 142235059 -60093288 + L2 LINE L2 1154 2055 -1258 2751 79 3 0 chr4 142235059 142235413 -60092934 - THE1A LTR MaLR 0 355 1 3369 296 91 65 chr4 142235413 142236575 -60091772 + L2 LINE L2 2055 3309 -4 25 0 0 0 chr4 142237077 142237102 -60091245 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr4 142237410 142237446 -60090901 + AT_rich Low_complexity Low_complexity 1 36 0 1556 182 32 74 chr4 142237454 142237861 -60090486 - MLT1B LTR MaLR 0 390 1 237 159 0 0 chr4 142238908 142238952 -60089395 + (TA)n Simple_repeat Simple_repeat 1 44 0 25 51 0 0 chr4 142239569 142239608 -60088739 + AT_rich Low_complexity Low_complexity 1 39 0 360 258 40 0 chr4 142240425 142240514 -60087833 + (CATATA)n Simple_repeat Simple_repeat 3 100 -31 2433 119 17 6 chr4 142240514 142240874 -60087473 + THE1B LTR MaLR 1 364 0 360 258 40 0 chr4 142240874 142240908 -60087439 + (CATATA)n Simple_repeat Simple_repeat 100 131 0 1152 156 5 38 chr4 142240990 142241202 -60087145 + Tigger1 DNA MER2_type 2213 2417 -1 21 57 0 0 chr4 142241403 142241438 -60086909 + AT_rich Low_complexity Low_complexity 1 35 0 23 97 0 0 chr4 142241688 142241760 -60086587 + AT_rich Low_complexity Low_complexity 1 72 0 425 311 54 43 chr4 142241972 142242322 -60086025 - L1MC4a LINE L1 -1866 5942 5589 21 0 0 0 chr4 142242355 142242376 -60085971 + AT_rich Low_complexity Low_complexity 1 21 0 37 23 0 0 chr4 142242610 142242654 -60085693 + AT_rich Low_complexity Low_complexity 1 44 0 2666 45 0 0 chr4 142244270 142244579 -60083768 - AluY SINE Alu -2 309 1 2789 129 5 7 chr4 142245071 142245497 -60082850 + MER61B LTR ERV1 1 425 0 33 90 0 0 chr4 142245620 142245709 -60082638 + AT_rich Low_complexity Low_complexity 1 89 0 361 272 163 31 chr4 142245739 142246033 -60082314 - L1MC4a LINE L1 -1596 4550 4218 259 224 47 84 chr4 142246126 142246233 -60082114 + L1MC4 LINE L1 7513 7615 -427 617 231 132 51 chr4 142246255 142246550 -60081797 + L1MC4 LINE L1 7724 8042 0 2674 157 2 7 chr4 142246560 142247025 -60081322 + L1PA13 LINE L1 5682 6144 -19 22 56 0 0 chr4 142247941 142247977 -60080370 + AT_rich Low_complexity Low_complexity 1 36 0 1934 122 0 10 chr4 142247996 142248291 -60080056 - AluY SINE Alu -19 292 1 21 36 0 0 chr4 142248291 142248319 -60080028 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chr4 142248952 142248994 -60079353 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr4 142249218 142249241 -60079106 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 142250406 142250429 -60077918 + AT_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr4 142251391 142251438 -60076909 + AT_rich Low_complexity Low_complexity 1 47 0 1776 209 75 51 chr4 142251966 142252388 -60075959 + MLT1D LTR MaLR 1 438 -67 2793 13 0 0 chr4 142252388 142252696 -60075651 - AluY SINE Alu -3 308 1 1776 209 75 51 chr4 142252696 142252766 -60075581 + MLT1D LTR MaLR 438 505 0 21 36 0 0 chr4 142252791 142252819 -60075528 + AT_rich Low_complexity Low_complexity 1 28 0 718 342 56 20 chr4 142252884 142253241 -60075106 - LTR16B LTR ERVL -18 446 77 1561 178 3 35 chr4 142253868 142254182 -60074165 + AluSx SINE Alu 1 304 -8 2412 183 15 22 chr4 142254465 142254680 -60073667 - MER65C LTR ERV1 0 461 246 3910 107 23 46 chr4 142254680 142255149 -60073198 - LTR9B LTR ERV1 -1 643 192 2046 128 3 3 chr4 142255149 142255453 -60072894 - AluSg SINE Alu 0 310 7 3910 107 23 46 chr4 142255453 142255640 -60072707 - LTR9B LTR ERV1 -452 192 2 2412 183 15 22 chr4 142255640 142255888 -60072459 - MER65C LTR ERV1 -215 246 1 2997 130 64 11 chr4 142256224 142256804 -60071543 - MER4B LTR ERV1 0 779 1 228 367 182 26 chr4 142257012 142257402 -60070945 + L2 LINE L2 2030 2480 -834 3699 192 47 11 chr4 142257592 142258382 -60069965 + LTR1B LTR ERV1 9 826 0 1835 230 65 26 chr4 142259268 142259724 -60068623 + MLT2B2 LTR ERVL 1 479 -36 456 19 0 0 chr4 142259724 142259777 -60068570 + (TA)n Simple_repeat Simple_repeat 1 53 0 1835 230 65 26 chr4 142259777 142259816 -60068531 + MLT2B2 LTR ERVL 479 515 0 542 192 99 35 chr4 142260175 142260347 -60068000 - MER58C DNA MER1_type -2 213 31 22 0 0 0 chr4 142260494 142260516 -60067831 + AT_rich Low_complexity Low_complexity 1 22 0 339 271 93 0 chr4 142260516 142260634 -60067713 - MLT1J LTR MaLR -35 476 348 334 320 39 44 chr4 142260769 142260950 -60067397 - MLT1J LTR MaLR -331 180 1 23 33 0 0 chr4 142261029 142261059 -60067288 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 142261648 142261669 -60066678 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 142261845 142261872 -60066475 + AT_rich Low_complexity Low_complexity 1 27 0 330 125 28 14 chr4 142262139 142262211 -60066136 - L1PA16 LINE L1 -2 6164 6092 2454 126 25 10 chr4 142262211 142262615 -60065732 + L1PA12 LINE L1 5721 6130 -38 * 2895 158 2 6 chr4 142262605 142263081 -60065266 - L1PA16 LINE L1 -61 6105 5632 967 187 189 15 chr4 142263081 142263485 -60064862 + MER52A LTR ERV1 1 555 -1200 * 1773 166 6 12 chr4 142263475 142263794 -60064553 + MER52A LTR ERV1 1439 1755 0 1483 127 41 0 chr4 142263794 142264038 -60064309 - L1PA16 LINE L1 -531 5635 5382 2660 102 3 0 chr4 142264535 142264896 -60063451 + THE1B LTR MaLR 1 362 -2 33 0 0 0 chr4 142265026 142265059 -60063288 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr4 142265465 142265487 -60062860 + AT_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chr4 142266538 142266563 -60061784 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1222 284 91 25 chr4 142267336 142267821 -60060526 - LTR40a LTR ERVL 0 519 3 1106 258 302 75 chr4 142267959 142268614 -60059733 + MER52A LTR ERV1 668 1471 -284 521 319 0 6 chr4 142268614 142268774 -60059573 + MER52A LTR ERV1 1596 1754 -1 22 0 0 0 chr4 142268867 142268889 -60059458 + AT_rich Low_complexity Low_complexity 1 22 0 580 323 90 27 chr4 142268905 142269459 -60058888 + L1M4 LINE L1 2125 2713 -3433 27 49 0 0 chr4 142269485 142269526 -60058821 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr4 142270353 142270377 -60057970 + AT_rich Low_complexity Low_complexity 1 24 0 3422 210 81 81 chr4 142272561 142273679 -60054668 + LTR28 LTR ERV1 1 636 0 272 311 22 22 chr4 142274269 142274359 -60053988 - MIR3 SINE MIR -54 154 65 25 51 0 0 chr4 142274422 142274461 -60053886 + AT_rich Low_complexity Low_complexity 1 39 0 1617 117 132 0 chr4 142274756 142275021 -60053326 + AluSg SINE Alu 1 300 0 1581 142 124 15 chr4 142275318 142275585 -60052762 - AluSg SINE Alu -14 296 1 674 273 67 10 chr4 142276222 142276416 -60051931 - LTR16B LTR ERVL -14 450 246 587 391 16 16 chr4 142277233 142277722 -60050625 - HERV16 LTR ERVL -895 4869 4381 459 355 17 27 chr4 142277757 142278060 -60050287 - HERV16 LTR ERVL -1063 3933 3757 301 242 0 74 chr4 142278102 142278197 -60050150 - HERV16 LTR ERVL -1337 3659 3572 1427 239 0 42 chr4 142278219 142278579 -60049768 - MLT1A1 LTR MaLR 0 365 21 1331 333 51 17 chr4 142278596 142279495 -60048852 - HERV16 LTR ERVL -2387 2609 1659 474 376 16 4 chr4 142279498 142279753 -60048594 - HERV16 LTR ERVL -3817 1179 922 594 343 20 43 chr4 142279923 142280314 -60048033 - HERV16 LTR ERVL -4320 676 295 1028 302 50 18 chr4 142280575 142280976 -60047371 - LTR16B LTR ERVL -50 414 1 419 0 20 0 chr4 142280990 142281041 -60047306 + (CA)n Simple_repeat Simple_repeat 2 53 0 1596 275 58 11 chr4 142281041 142281855 -60046492 - L1MEc LINE L1 -2948 3616 2765 1576 121 191 16 chr4 142281860 142282174 -60046173 - MSTA LTR MaLR -2 426 58 * 14164 153 48 23 chr4 142282168 142284727 -60043620 - Tigger2 DNA MER2_type -95 2623 1 22 0 0 0 chr4 142285602 142285624 -60042723 + AT_rich Low_complexity Low_complexity 1 22 0 1837 193 46 31 chr4 142286494 142287037 -60041310 + MLT2A2 LTR ERVL 1 554 0 603 314 143 42 chr4 142288599 142289067 -60039280 + L2 LINE L2 2469 2991 -281 1911 154 20 89 chr4 142289074 142289514 -60038833 + L1MA8 LINE L1 5880 6289 -2 234 191 0 0 chr4 142289536 142289583 -60038764 + (TATG)n Simple_repeat Simple_repeat 4 50 0 1087 62 0 14 chr4 142289621 142289767 -60038580 - L1PA8 LINE L1 0 6172 6029 831 266 53 11 chr4 142289811 142290153 -60038194 - MSTD LTR MaLR 0 396 1 269 287 10 59 chr4 142290225 142290326 -60038021 - L2 LINE L2 -534 2780 2685 1336 286 44 67 chr4 142290546 142291487 -60036860 - L1MEc LINE L1 -4287 2458 1540 291 339 63 8 chr4 142291591 142291718 -60036629 - LTR16A LTR ERVL -75 375 242 734 301 47 33 chr4 142291735 142292011 -60036336 - LTR16A LTR ERVL -168 282 3 24 53 0 0 chr4 142292317 142292355 -60035992 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr4 142293119 142293142 -60035205 + AT_rich Low_complexity Low_complexity 1 23 0 225 211 0 0 chr4 142293246 142293298 -60035049 + (TG)n Simple_repeat Simple_repeat 1 52 0 188 186 0 23 chr4 142293299 142293342 -60035005 - L2 LINE L2 -94 3219 3178 1177 276 48 27 chr4 142293551 142293993 -60034354 - L1MEc LINE L1 -5589 456 6 824 155 26 30 chr4 142294956 142295143 -60033204 + MER67D LTR ERV1 1 196 -356 226 274 155 0 chr4 142295305 142295389 -60032958 + MLT1L LTR MaLR 479 575 -40 915 156 7 0 chr4 142295719 142295873 -60032474 + AluJb SINE Alu 141 295 -17 2102 105 7 3 chr4 142295875 142296181 -60032166 + AluSq SINE Alu 1 307 -6 2743 239 58 28 chr4 142297891 142299449 -60028898 + L1ME LINE L1 4181 5795 -369 754 223 0 0 chr4 142299459 142299607 -60028740 - AluSg/x SINE Alu -29 283 136 549 198 279 2 chr4 142299788 142299992 -60028355 + L1ME LINE L1 5379 5586 -584 30 59 0 0 chr4 142300036 142300087 -60028260 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr4 142301000 142301029 -60027318 + AT_rich Low_complexity Low_complexity 1 29 0 225 317 19 19 chr4 142301079 142301183 -60027164 - L2 LINE L2 -968 2346 2243 2007 121 3 24 chr4 142301511 142301808 -60026539 + AluJo SINE Alu 5 295 -17 21 0 0 0 chr4 142302397 142302418 -60025929 + AT_rich Low_complexity Low_complexity 1 21 0 194 0 39 0 chr4 142302455 142302481 -60025866 + (CAA)n Simple_repeat Simple_repeat 2 28 0 198 353 30 30 chr4 142302558 142302691 -60025656 - MIR3 SINE MIR -69 139 7 4454 80 0 10 chr4 142303854 142304464 -60023883 + L1PA8A LINE L1 5528 6131 0 24 0 0 0 chr4 142304720 142304744 -60023603 + AT_rich Low_complexity Low_complexity 1 24 0 580 244 0 0 chr4 142305127 142305246 -60023101 + L1PB4 LINE L1 4023 4141 -2005 4723 152 22 7 chr4 142305252 142306095 -60022252 + L1PB4 LINE L1 5299 6154 -2 187 388 19 10 chr4 142306100 142306203 -60022144 + L2 LINE L2 1182 1285 -2029 360 320 66 25 chr4 142306262 142306459 -60021888 + MLT1L LTR MaLR 16 220 -395 1828 296 86 10 chr4 142306733 142307626 -60020721 - L1ME LINE L1 -2091 3989 3029 324 226 66 0 chr4 142307628 142307734 -60020613 - L1ME LINE L1 -3470 2610 2498 621 330 92 26 chr4 142307793 142308262 -60020085 - L1ME LINE L1 -5467 603 104 669 295 83 10 chr4 142308623 142308816 -60019531 + MER58A DNA MER1_type 1 207 -17 2416 187 25 25 chr4 142308878 142309354 -60018993 - MER70B LTR ERVL -102 476 1 2708 173 56 43 chr4 142309747 142310490 -60017857 + LTR1 LTR ERV1 1 707 -78 1198 300 45 24 chr4 142310961 142311428 -60016919 + HERV16 LTR ERVL 51 527 -4469 1703 326 87 15 chr4 142311535 142312352 -60015995 + HERV16 LTR ERVL 686 1561 -3435 204 40 0 0 chr4 142313094 142313119 -60015228 + (TG)n Simple_repeat Simple_repeat 2 26 0 199 240 19 0 chr4 142313129 142313233 -60015114 + (TA)n Simple_repeat Simple_repeat 2 107 0 1420 137 94 8 chr4 142314209 142314465 -60013882 + AluJb SINE Alu 34 311 -1 3021 136 24 55 chr4 142314863 142315492 -60012855 - MER4B LTR ERV1 0 779 1 200 290 14 0 chr4 142315497 142315566 -60012781 + (CATA)n Simple_repeat Simple_repeat 2 71 0 2177 115 0 3 chr4 142315949 142316253 -60012094 - AluSc SINE Alu -6 303 1 436 355 104 26 chr4 142318280 142318826 -60009521 - L2 LINE L2 -342 2972 2384 567 175 0 0 chr4 142318922 142319019 -60009328 - MLT1A1 LTR MaLR -9 356 260 281 354 88 0 chr4 142319200 142319347 -60009000 - MIR SINE MIR -59 203 44 345 357 54 0 chr4 142320293 142320478 -60007869 + MIR SINE MIR 68 262 0 337 341 39 8 chr4 142320754 142320883 -60007464 - MER5A DNA MER1_type 0 189 57 207 346 70 6 chr4 142321342 142321498 -60006849 + MIR SINE MIR 91 256 -6 23 54 0 0 chr4 142321679 142321716 -60006631 + AT_rich Low_complexity Low_complexity 1 37 0 279 385 85 0 chr4 142321721 142321851 -60006496 + L2 LINE L2 3132 3272 0 249 349 47 8 chr4 142323056 142323185 -60005162 - MER5B DNA MER1_type -44 134 1 21 0 0 0 chr4 142324435 142324456 -60003891 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr4 142324825 142324867 -60003480 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr4 142326723 142326746 -60001601 + AT_rich Low_complexity Low_complexity 1 23 0 1549 189 0 7 chr4 142326798 142327068 -60001279 - AluJo SINE Alu -44 268 1 38 22 0 0 chr4 142327068 142327113 -60001234 + AT_rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr4 142327218 142327243 -60001104 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr4 142330251 142330279 -59998068 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 142331065 142331086 -59997261 + AT_rich Low_complexity Low_complexity 1 21 0 2309 137 60 21 chr4 142331972 142332402 -59995945 + LTR7 LTR ERV1 2 448 -2 12606 120 23 28 chr4 142332404 142334925 -59993422 + HERVH LTR ERV1 1 2830 -4883 1431 86 5 0 chr4 142334925 142335123 -59993224 + HERVH LTR ERV1 3357 3555 -4158 1033 94 0 7 chr4 142335126 142335275 -59993072 + LTR7 LTR ERV1 301 448 -2 2017 184 59 9 chr4 142335385 142335809 -59992538 - MER65A LTR ERV1 0 445 1 897 124 0 0 chr4 142336076 142336205 -59992142 - AluSq/x SINE Alu -184 129 1 791 270 31 6 chr4 142336210 142336232 -59992115 - L1MEc LINE L1 -5218 1178 1158 369 0 0 0 chr4 142336232 142336273 -59992074 + (TG)n Simple_repeat Simple_repeat 2 42 0 791 270 31 6 chr4 142336273 142336572 -59991775 - L1MEc LINE L1 -5238 1158 849 1670 223 11 30 chr4 142336581 142336953 -59991394 + MLT1A1 LTR MaLR 1 365 0 609 333 40 28 chr4 142337166 142337637 -59990710 - L1MEc LINE L1 -5884 512 36 366 23 0 0 chr4 142339220 142339263 -59989084 + (TG)n Simple_repeat Simple_repeat 2 44 0 228 135 0 0 chr4 142339621 142339658 -59988689 + (TG)n Simple_repeat Simple_repeat 1 37 0 351 303 141 48 chr4 142341085 142341780 -59986567 - L2 LINE L2 -2 3311 2560 28 0 0 0 chr4 142342956 142342984 -59985363 + AT_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr4 142343563 142343594 -59984753 + AT_rich Low_complexity Low_complexity 1 31 0 40 91 0 0 chr4 142344281 142344391 -59983956 + AT_rich Low_complexity Low_complexity 1 110 0 420 314 86 14 chr4 142344564 142344774 -59983573 + L2 LINE L2 3080 3304 -9 1826 157 17 0 chr4 142344857 142345156 -59983191 + AluSx SINE Alu 3 306 -6 643 334 97 50 chr4 142345265 142345804 -59982543 - HAL1 LINE L1 -1130 1377 814 780 208 133 29 chr4 142347890 142348131 -59980216 + MER57A LTR ERV1 124 389 -14 1279 233 82 17 chr4 142348761 142348885 -59979462 + LTR47B LTR ERVL 1 116 -327 2263 101 3 3 chr4 142348885 142349192 -59979155 + AluSp SINE Alu 1 307 -6 1279 233 82 17 chr4 142349192 142349483 -59978864 + LTR47B LTR ERVL 116 443 0 445 122 327 9 chr4 142349956 142350063 -59978284 + L1PA15 LINE L1 6018 6158 -7 1227 159 82 0 chr4 142350267 142350474 -59977873 + MER30 DNA MER1_type 7 230 0 305 238 50 0 chr4 142351564 142351644 -59976703 - L1ME3 LINE L1 -8 6154 6071 709 302 134 40 chr4 142352075 142352545 -59975802 - MER115 DNA AcHobo -3 690 177 1031 286 124 26 chr4 142352771 142353313 -59975034 + L1ME3A LINE L1 5563 6157 -13 1053 320 125 28 chr4 142353422 142354221 -59974126 - L3 LINE CR1 -67 1510 634 364 278 113 58 chr4 142354266 142354629 -59973718 + L1MC5 LINE L1 6747 7129 -832 22 0 0 0 chr4 142355469 142355491 -59972856 + AT_rich Low_complexity Low_complexity 1 22 0 183 42 0 0 chr4 142357836 142357860 -59970487 + (T)n Simple_repeat Simple_repeat 1 24 0 31 76 0 0 chr4 142358794 142358860 -59969487 + AT_rich Low_complexity Low_complexity 1 66 0 194 325 48 0 chr4 142359753 142359836 -59968511 + L2 LINE L2 3225 3311 -2 21 89 0 0 chr4 142360162 142360218 -59968129 + AT_rich Low_complexity Low_complexity 1 56 0 42 20 0 0 chr4 142360370 142360419 -59967928 + AT_rich Low_complexity Low_complexity 1 49 0 1156 150 0 0 chr4 142360609 142360796 -59967551 + MLT2D LTR ERVL 1 187 -227 290 138 0 17 chr4 142360871 142360929 -59967418 + MLT2C2 LTR ERVL 408 464 0 1562 181 30 0 chr4 142361089 142361384 -59966963 - AluJo SINE Alu 0 306 4 307 276 26 26 chr4 142364306 142364422 -59963925 + MIR3 SINE MIR 72 187 -21 573 317 63 37 chr4 142364448 142364706 -59963641 + MLT2E LTR ERVL 4 276 -352 366 306 194 6 chr4 142364790 142364960 -59963387 + MLT2E LTR ERVL 425 626 -2 359 287 41 25 chr4 142366545 142366667 -59961680 - MLT1J LTR MaLR 0 511 388 1648 267 99 16 chr4 142366703 142367249 -59961098 + MLT1E1 LTR MaLR 1 591 -63 180 111 0 0 chr4 142367335 142367362 -59960985 + (GAA)n Simple_repeat Simple_repeat 2 28 0 368 257 55 18 chr4 142367364 142367473 -59960874 - MLT1J LTR MaLR -262 249 137 215 352 24 8 chr4 142368551 142368676 -59959671 - MIR SINE MIR -68 194 68 22 0 0 0 chr4 142371046 142371068 -59957279 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 142371603 142371625 -59956722 + AT_rich Low_complexity Low_complexity 1 22 0 211 27 27 27 chr4 142372107 142372144 -59956203 + (TTTAA)n Simple_repeat Simple_repeat 3 39 0 45 75 0 0 chr4 142372300 142372394 -59955953 + AT_rich Low_complexity Low_complexity 1 94 0 28 0 0 0 chr4 142373353 142373381 -59954966 + AT_rich Low_complexity Low_complexity 1 28 0 241 285 75 60 chr4 142373723 142373923 -59954424 + L1ME LINE L1 5526 5728 -393 346 299 83 19 chr4 142373948 142374105 -59954242 - LTR16C LTR ERVL -2 489 323 2608 163 12 38 chr4 142374624 142375103 -59953244 - MER52A LTR ERV1 -61 1694 1228 1032 241 184 19 chr4 142375108 142375527 -59952820 - MER52A LTR ERV1 -1215 540 53 1433 296 82 12 chr4 142376014 142376676 -59951671 - L1M4c LINE L1 -4348 2215 1356 2028 131 7 0 chr4 142376676 142376974 -59951373 - AluSp SINE Alu -13 300 1 1433 296 82 12 chr4 142376974 142377060 -59951287 - L1M4c LINE L1 -5207 1356 1277 1101 235 94 53 chr4 142377104 142377570 -59950777 + L1ME1 LINE L1 3895 4389 -1757 1252 207 73 25 chr4 142377570 142377845 -59950502 - AluJo SINE Alu -24 288 1 1101 235 94 53 chr4 142377845 142377940 -59950407 + L1ME1 LINE L1 4389 4479 -1667 2019 269 31 61 chr4 142377942 142378813 -59949534 + L1ME1 LINE L1 5254 6098 -68 369 245 49 35 chr4 142378742 142378885 -59949462 + L1MA10 LINE L1 6187 6331 -3 * 1792 195 5 5 chr4 142381117 142381487 -59946860 + L1MC3 LINE L1 7399 7768 -17 24256 167 12 13 chr4 142382425 142387990 -59940357 - L1P3 LINE L1 -859 5602 2 269 214 0 18 chr4 142388431 142388487 -59939860 + Tigger5 DNA MER2_type 1 55 -2268 * 322 231 0 93 chr4 142388483 142388591 -59939756 + Tigger5 DNA MER2_type 2226 2323 0 3163 172 32 56 chr4 142388733 142389478 -59938869 + LTR8A LTR ERV1 1 727 0 201 74 0 0 chr4 142390382 142390409 -59937938 + (T)n Simple_repeat Simple_repeat 1 27 0 349 333 101 9 chr4 142391968 142392286 -59936061 + L1MC/D LINE L1 3909 4255 -1891 32 0 0 0 chr4 142393143 142393175 -59935172 + AT_rich Low_complexity Low_complexity 1 32 0 255 271 52 52 chr4 142393244 142393459 -59934888 + L1P LINE L1 4787 4999 -1147 229 306 39 78 chr4 142393787 142393967 -59934380 + L1MC/D LINE L1 5713 5885 -357 559 236 28 26 chr4 142394068 142394322 -59934025 - LTR52 LTR ERVL -124 297 4 369 0 0 0 chr4 142394361 142394402 -59933945 + (CA)n Simple_repeat Simple_repeat 1 41 0 997 185 36 0 chr4 142395785 142395980 -59932367 + MER3 DNA MER1_type 1 202 -7 296 242 176 0 chr4 142396037 142396202 -59932145 - Charlie2 DNA MER1_type -110 2752 2559 34 0 0 0 chr4 142396308 142396342 -59932005 + AT_rich Low_complexity Low_complexity 1 34 0 1101 97 0 0 chr4 142396346 142396500 -59931847 - L1PA7 LINE L1 -6 6148 5995 11622 123 25 6 chr4 142396502 142398313 -59930034 - L1P3 LINE L1 -4618 1833 7 1439 199 26 13 chr4 142398683 142398985 -59929362 - AluJb SINE Alu -6 306 1 565 272 60 13 chr4 142399059 142399294 -59929053 - Charlie2a DNA MER1_type -1115 1747 1502 644 277 152 53 chr4 142399391 142399500 -59928847 - Charlie2 DNA MER1_type -2114 668 571 2392 166 29 11 chr4 142399500 142399953 -59928394 - LOR1b LTR ERV1 0 461 1 644 277 152 53 chr4 142399953 142400422 -59927925 - Charlie2 DNA MER1_type -2211 571 32 1463 176 26 77 chr4 142401757 142402109 -59926238 - MLT2D LTR ERVL -2 412 79 201 308 84 65 chr4 142403624 142403731 -59924616 + L2 LINE L2 3149 3257 -15 569 121 11 0 chr4 142403785 142403876 -59924471 - MLT2D LTR ERVL -319 95 4 180 0 0 0 chr4 142404100 142404120 -59924227 + (CATAT)n Simple_repeat Simple_repeat 2 21 0 2117 117 47 36 chr4 142404731 142405091 -59923256 + THE1B LTR MaLR 1 364 0 10391 104 29 5 chr4 142405091 142406635 -59921712 + THE1B-int LTR MaLR 1 1580 0 1887 140 56 36 chr4 142406636 142406992 -59921355 + THE1B LTR MaLR 2 364 0 22 35 0 0 chr4 142407708 142407737 -59920610 + AT_rich Low_complexity Low_complexity 1 29 0 249 309 45 9 chr4 142408478 142408588 -59919759 + MER117 DNA MER1_type 2 115 -82 897 39 23 15 chr4 142409094 142409224 -59919123 + (TTTC)n Simple_repeat Simple_repeat 4 134 0 1911 140 0 0 chr4 142409408 142409687 -59918660 - AluJo SINE Alu -28 284 6 532 248 62 6 chr4 142409845 142410006 -59918341 - MIR SINE MIR -41 221 52 325 305 107 16 chr4 142410103 142410290 -59918057 + L2 LINE L2 2555 2758 -556 1158 123 11 37 chr4 142410295 142410482 -59917865 - AluSg/x SINE Alu -12 300 119 904 99 14 14 chr4 142411053 142411195 -59917152 - FLAM_C SINE Alu -1 142 1 584 216 10 112 chr4 142411198 142411404 -59916943 + MLT1F1 LTR MaLR 1 176 -366 2288 91 0 0 chr4 142411407 142411722 -59916625 - AluSq SINE Alu 0 315 1 221 368 0 43 chr4 142412308 142412493 -59915854 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 967 194 0 0 chr4 142412574 142412744 -59915603 + FRAM SINE Alu 1 170 -6 1084 230 81 21 chr4 142412978 142413313 -59915034 + L1ME1 LINE L1 5755 6109 -57 240 35 0 0 chr4 142413385 142413414 -59914933 + (CA)n Simple_repeat Simple_repeat 1 29 0 28 0 0 0 chr4 142414166 142414194 -59914153 + AT_rich Low_complexity Low_complexity 1 28 0 7388 39 0 40 chr4 142414197 142415193 -59913154 - L1PA5 LINE L1 -3 6151 5174 2264 95 0 13 chr4 142415193 142415508 -59912839 - AluY SINE Alu 0 311 1 7388 39 0 40 chr4 142415508 142415614 -59912733 - L1PA5 LINE L1 -980 5174 5065 770 213 23 65 chr4 142415714 142415993 -59912354 - LTR1 LTR ERV1 -565 220 1 2088 172 23 0 chr4 142415995 142416344 -59912003 - LTR1-int LTR ERV1 -1 7090 6734 * 5228 179 2 7 chr4 142416341 142417207 -59911140 - LTR1-int LTR ERV1 -489 6602 5741 1132 69 0 0 chr4 142417316 142417461 -59910886 - L1P LINE L1 -1108 5038 4894 815 320 80 80 chr4 142417484 142418267 -59910080 - L2 LINE L2 -220 3052 2270 2236 115 0 16 chr4 142418267 142418581 -59909766 + AluSx SINE Alu 1 309 -3 815 320 80 80 chr4 142418581 142418841 -59909506 - L2 LINE L2 -1002 2270 2011 1347 184 0 0 chr4 142419721 142419938 -59908409 - MLT1D LTR MaLR 0 505 289 1527 22 11 0 chr4 142420045 142420228 -59908119 + L1PA2 LINE L1 5970 6154 -1 25 0 0 0 chr4 142420468 142420493 -59907854 + AT_rich Low_complexity Low_complexity 1 25 0 1742 280 44 29 chr4 142421398 142421983 -59906364 - MLT1E2 LTR MaLR -5 621 28 1548 273 44 38 chr4 142422044 142422341 -59906006 - MER90 LTR ERV1 -21 554 251 2137 108 27 0 chr4 142422341 142422636 -59905711 + AluSp SINE Alu 1 303 -10 1548 273 44 38 chr4 142422636 142422887 -59905460 - MER90 LTR ERV1 -324 251 3 1545 47 0 0 chr4 142423420 142423612 -59904735 - L1P1 LINE L1 -353 5802 5611 206 219 14 27 chr4 142424546 142424619 -59903728 + (TA)n Simple_repeat Simple_repeat 1 72 0 1939 54 0 0 chr4 142424634 142424876 -59903471 - L1PA5 LINE L1 -7 6147 5906 25 51 0 0 chr4 142424927 142424966 -59903381 + AT_rich Low_complexity Low_complexity 1 39 0 376 288 38 53 chr4 142424966 142425098 -59903249 + L2 LINE L2 3184 3313 0 243 276 0 0 chr4 142425684 142425742 -59902605 + CT-rich Low_complexity Low_complexity 3 60 0 723 185 0 8 chr4 142427130 142427273 -59901074 - FLAM_A SINE Alu 0 143 2 183 324 0 83 chr4 142428217 142428325 -59900022 + MIR SINE MIR 28 126 -136 521 271 67 48 chr4 142429629 142429839 -59898508 + MER58C DNA MER1_type 2 215 0 704 290 116 29 chr4 142433133 142433680 -59894667 - MLT1G LTR MaLR -2 559 3 38 61 0 0 chr4 142433719 142433785 -59894562 + AT_rich Low_complexity Low_complexity 1 66 0 22 56 0 0 chr4 142434376 142434412 -59893935 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr4 142434486 142434514 -59893833 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 142434785 142434814 -59893533 + AT_rich Low_complexity Low_complexity 1 29 0 246 375 16 31 chr4 142435167 142435295 -59893052 + L2 LINE L2 3145 3270 -2 535 322 78 33 chr4 142435668 142436198 -59892149 + L2 LINE L2 2503 3231 -82 4224 87 18 0 chr4 142436584 142437614 -59890733 - L1PA8A LINE L1 -344 5787 4742 247 305 47 31 chr4 142438663 142438791 -59889556 + MLT1L LTR MaLR 483 612 -3 28 48 0 0 chr4 142439718 142439760 -59888587 + AT_rich Low_complexity Low_complexity 1 42 0 26 50 0 0 chr4 142440688 142440728 -59887619 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr4 142440811 142440840 -59887507 + AT_rich Low_complexity Low_complexity 1 29 0 42 48 0 0 chr4 142440916 142440979 -59887368 + AT_rich Low_complexity Low_complexity 1 63 0 4299 186 25 24 chr4 142441204 142442320 -59886027 - L1MA9 LINE L1 -38 6274 5157 319 291 0 0 chr4 142442520 142442606 -59885741 - HAL1b LINE L1 -860 488 403 25 0 0 0 chr4 142443400 142443425 -59884922 + AT_rich Low_complexity Low_complexity 1 25 0 2105 211 12 10 chr4 142444529 142444947 -59883400 - MLT2B1 LTR ERVL -100 420 2 637 294 69 12 chr4 142445145 142445390 -59882957 - MIR SINE MIR -3 259 1 21 82 0 0 chr4 142445634 142445683 -59882664 + AT_rich Low_complexity Low_complexity 1 49 0 2192 100 3 0 chr4 142446997 142447287 -59881060 + AluSg SINE Alu 1 291 -19 365 321 138 28 chr4 142447390 142447680 -59880667 + L1ME LINE L1 5344 5665 -2143 243 203 114 0 chr4 142447821 142447900 -59880447 + L1ME LINE L1 5812 5899 -222 1237 211 50 8 chr4 142448098 142448358 -59879989 + AluJo SINE Alu 3 273 -39 22 0 0 0 chr4 142448647 142448669 -59879678 + AT_rich Low_complexity Low_complexity 1 22 0 2386 70 13 0 chr4 142448674 142448974 -59879373 + AluY SINE Alu 1 304 -7 2318 245 66 28 chr4 142449048 142449804 -59878543 - L1ME1 LINE L1 -28 6138 5354 295 292 32 39 chr4 142449871 142450025 -59878322 - L1ME1 LINE L1 -831 5315 5163 233 211 86 55 chr4 142450449 142450577 -59877770 + L1ME LINE L1 5768 5899 -222 1214 229 44 7 chr4 142450775 142451050 -59877297 + AluJo SINE Alu 3 287 -15 22 0 0 0 chr4 142451325 142451347 -59877000 + AT_rich Low_complexity Low_complexity 1 22 0 2237 104 13 0 chr4 142451352 142451659 -59876688 + AluY SINE Alu 1 311 0 2354 242 66 28 chr4 142451733 142452489 -59875858 - L1ME1 LINE L1 -28 6138 5354 397 253 32 38 chr4 142452555 142452713 -59875634 - L1ME1 LINE L1 -830 5316 5160 3163 86 9 7 chr4 142453856 142454299 -59874048 + MLT2A1 LTR ERVL 1 444 0 28450 88 4 4 chr4 142454299 142458072 -59870275 + HERVL-A1 LTR ERVL 1 3774 -1880 7668 69 4 6 chr4 142458066 142459043 -59869304 + HERVL-A1 LTR ERVL 4483 5457 -197 * 1819 183 0 36 chr4 142459046 142459407 -59868940 + MER4E LTR ERV1 432 779 0 21 0 0 0 chr4 142459751 142459772 -59868575 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4 142460750 142460781 -59867566 + AT_rich Low_complexity Low_complexity 1 31 0 326 253 40 10 chr4 142460857 142460956 -59867391 - MIR SINE MIR -66 196 95 23 101 0 0 chr4 142460994 142461073 -59867274 + AT_rich Low_complexity Low_complexity 1 79 0 672 283 28 40 chr4 142462000 142462247 -59866100 + LTR16A1 LTR ERVL 168 411 -46 249 33 0 0 chr4 142462304 142462334 -59866013 + (CTA)n Simple_repeat Simple_repeat 2 31 0 202 260 20 0 chr4 142462351 142462401 -59865946 - MIR SINE MIR -19 243 193 27 29 0 0 chr4 142462430 142462464 -59865883 + AT_rich Low_complexity Low_complexity 1 34 0 4120 121 56 17 chr4 142462536 142463199 -59865148 - LTR8 LTR ERV1 -2 689 1 27 29 0 0 chr4 142463349 142463383 -59864964 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr4 142463415 142463438 -59864909 + AT_rich Low_complexity Low_complexity 1 23 0 2276 150 28 58 chr4 142463864 142464365 -59863982 + LTR19A LTR ERV1 1 486 0 23 68 0 0 chr4 142464390 142464434 -59863913 + AT_rich Low_complexity Low_complexity 1 44 0 1506 170 48 22 chr4 142466197 142466508 -59861839 + LTR1B LTR ERV1 508 826 0 21 0 0 0 chr4 142466744 142466765 -59861582 + AT_rich Low_complexity Low_complexity 1 21 0 39 22 0 0 chr4 142466950 142466996 -59861351 + AT_rich Low_complexity Low_complexity 1 46 0 28 91 0 0 chr4 142467675 142467752 -59860595 + AT_rich Low_complexity Low_complexity 1 77 0 224 338 78 42 chr4 142468491 142468633 -59859714 + MIR SINE MIR 53 199 -63 1786 186 74 76 chr4 142468874 142469428 -59858919 - MER34B LTR ERV1 -2 563 11 506 234 105 58 chr4 142470127 142470358 -59857989 - LTR1B LTR ERV1 -17 1003 572 429 279 133 62 chr4 142470500 142470823 -59857524 + MLT1L LTR MaLR 270 615 0 627 108 0 0 chr4 142471023 142471116 -59857231 + (TA)n Simple_repeat Simple_repeat 2 94 0 7649 25 0 0 chr4 142473165 142474846 -59853501 + L1PA3 LINE L1 4467 6147 -8 34 24 0 0 chr4 142474846 142474887 -59853460 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr4 142476170 142476198 -59852149 + AT_rich Low_complexity Low_complexity 1 28 0 626 241 92 24 chr4 142476206 142476497 -59851850 - L1MCb LINE L1 -2228 4336 4026 21 0 0 0 chr4 142476644 142476665 -59851682 + AT_rich Low_complexity Low_complexity 1 21 0 719 308 104 64 chr4 142476817 142477882 -59850465 - L1MCb LINE L1 -2994 3570 2506 2475 55 0 0 chr4 142477949 142478256 -59850091 - AluY SINE Alu -4 307 1 2224 66 0 0 chr4 142478256 142478529 -59849818 - AluY SINE Alu -8 303 31 378 326 59 28 chr4 142479078 142479501 -59848846 - HAL1b LINE L1 -858 490 55 1925 156 32 27 chr4 142481987 142482360 -59845987 - THE1C LTR MaLR 0 375 1 481 330 96 31 chr4 142483856 142484522 -59843825 - L1 LINE L1 -1554 4592 3887 328 307 94 70 chr4 142484518 142485006 -59843341 - L1 LINE L1 -2494 3652 3153 * 333 250 15 0 chr4 142485204 142485272 -59843075 - Tigger2a DNA MER2_type 0 444 376 4522 206 25 6 chr4 142485308 142486826 -59841521 + L1PB4 LINE L1 4595 6140 -16 1698 162 3 45 chr4 142486827 142487141 -59841206 - AluJb SINE Alu -11 301 1 2171 162 13 18 chr4 142487169 142487551 -59840796 - Tigger2a DNA MER2_type -54 380 1 2726 224 67 47 chr4 142488101 142488756 -59839591 - L1MCb LINE L1 -4548 2197 1557 299 85 21 0 chr4 142488756 142488803 -59839544 + (TA)n Simple_repeat Simple_repeat 1 48 0 2726 224 67 47 chr4 142488803 142489197 -59839150 - L1MCb LINE L1 -5188 1557 1173 267 31 0 0 chr4 142489197 142489229 -59839118 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2726 224 67 47 chr4 142489229 142489606 -59838741 - L1MCb LINE L1 -5572 1173 558 440 229 9 19 chr4 142489725 142489830 -59838517 + MER67D LTR ERV1 311 414 -100 2352 84 10 3 chr4 142489908 142490219 -59838128 - AluSp SINE Alu 0 313 1 1447 153 3 94 chr4 142490693 142491000 -59837347 + AluJb SINE Alu 12 290 -22 34 0 0 0 chr4 142491000 142491034 -59837313 + AT_rich Low_complexity Low_complexity 1 34 0 185 301 32 43 chr4 142491047 142491140 -59837207 - L2 LINE L2 -768 2546 2455 258 282 39 13 chr4 142491599 142491677 -59836670 + MIR SINE MIR 40 119 -143 266 309 31 10 chr4 142491804 142491901 -59836446 - MIR SINE MIR -97 111 12 24 32 0 0 chr4 142492070 142492101 -59836246 + AT_rich Low_complexity Low_complexity 1 31 0 1854 128 31 58 chr4 142492833 142493215 -59835132 - THE1C LTR MaLR -3 372 1 2081 175 23 0 chr4 142494401 142494795 -59833552 - MER57A LTR ERV1 0 403 1 302 356 0 10 chr4 142495027 142495128 -59833219 + MER5A DNA MER1_type 84 183 -6 400 289 20 46 chr4 142495285 142495482 -59832865 - L2 LINE L2 -9 3304 3113 219 69 0 0 chr4 142496753 142496782 -59831565 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr4 142497704 142497725 -59830622 + AT_rich Low_complexity Low_complexity 1 21 0 214 346 13 70 chr4 142499446 142499602 -59828745 - L2 LINE L2 -33 3280 3134 277 308 42 84 chr4 142499822 142499965 -59828382 - L2 LINE L2 -2 3270 3134 337 311 122 45 chr4 142500125 142500476 -59827871 - L2 LINE L2 -212 3060 2690 434 266 70 61 chr4 142501775 142501989 -59826358 - LTR33 LTR ERVL -276 245 30 2123 60 60 0 chr4 142503059 142503341 -59825006 + AluY SINE Alu 1 299 -12 1093 333 27 11 chr4 142503430 142503796 -59824551 - LTR16A LTR ERVL -3 447 76 1543 352 49 22 chr4 142504440 142505501 -59822846 - ERVL LTR ERVL -677 4631 3234 1115 186 36 43 chr4 142505526 142505779 -59822568 + MER73 LTR ERVL 2 252 -392 574 174 0 0 chr4 142505775 142505873 -59822474 + MER73 LTR ERVL 404 501 -143 * 971 155 12 6 chr4 142505978 142506139 -59822208 + THE1B LTR MaLR 203 364 0 8323 188 5 15 chr4 142506139 142507574 -59820773 - HUERS-P2 LTR ERV1 -3150 3941 2521 7775 209 37 52 chr4 142507571 142509768 -59818579 - HUERS-P2 LTR ERV1 -943 2145 75 * 1829 201 103 102 chr4 142510002 142510747 -59817600 - LTR1B LTR ERV1 -80 746 1 22 70 0 0 chr4 142510942 142510985 -59817362 + AT_rich Low_complexity Low_complexity 1 43 0 1708 178 11 0 chr4 142511144 142511431 -59816916 + AluJb SINE Alu 1 290 -22 39 80 0 0 chr4 142511453 142511541 -59816806 + AT_rich Low_complexity Low_complexity 1 88 0 23 78 0 0 chr4 142511625 142511676 -59816671 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr4 142512059 142512080 -59816267 + AT_rich Low_complexity Low_complexity 1 21 0 427 0 18 35 chr4 142512449 142512506 -59815841 - THE1B LTR MaLR -308 56 1 8723 148 15 1 chr4 142512506 142513829 -59814518 + MER52-int LTR ERV1 3937 5277 -1814 25 0 0 0 chr4 142514398 142514423 -59813924 + AT_rich Low_complexity Low_complexity 1 25 0 1145 189 44 98 chr4 142515601 142515919 -59812428 + AluJo SINE Alu 1 301 -1 351 167 21 21 chr4 142516078 142516174 -59812173 + CT-rich Low_complexity Low_complexity 3 98 0 242 372 58 0 chr4 142516419 142516556 -59811791 + L2 LINE L2 1565 1709 -1605 40 59 0 0 chr4 142517025 142517093 -59811254 + AT_rich Low_complexity Low_complexity 1 68 0 558 143 10 10 chr4 142520064 142520162 -59808185 + MER4A LTR ERV1 1 98 -566 1619 159 159 70 chr4 142520162 142520533 -59807814 + MER4A LTR ERV1 261 664 0 2278 69 3 0 chr4 142520640 142520955 -59807392 + AluY SINE Alu 5 320 0 22 0 0 0 chr4 142520987 142521009 -59807338 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 142521509 142521530 -59806817 + AT_rich Low_complexity Low_complexity 1 21 0 312 276 82 0 chr4 142521553 142521651 -59806696 - MER112 DNA MER1_type -7 253 148 1200 260 189 36 chr4 142524590 142525120 -59803227 + L1MB4 LINE L1 26 636 -5748 * 2047 228 23 12 chr4 142525117 142525596 -59802751 - L1MB1 LINE L1 -959 5187 4704 * 3702 186 22 63 chr4 142525595 142526568 -59801779 + L1MB1 LINE L1 5173 6127 -62 21 0 0 0 chr4 142526579 142526600 -59801747 + AT_rich Low_complexity Low_complexity 1 21 0 1936 124 101 6 chr4 142526600 142526938 -59801409 - L1PB1 LINE L1 0 6151 5782 379 170 0 21 chr4 142526953 142527058 -59801289 - L1MC4 LINE L1 -359 5792 5730 * 421 204 76 15 chr4 142527056 142527188 -59801159 + L1MB4 LINE L1 3712 3851 -2531 1091 76 5 33 chr4 142527216 142527400 -59800947 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 291 193 36 0 chr4 142527403 142527486 -59800861 + GA-rich Low_complexity Low_complexity 2 87 0 303 247 17 0 chr4 142527494 142527581 -59800766 + L1MB4 LINE L1 3842 3931 -2451 381 128 12 35 chr4 142527586 142527672 -59800675 + GA-rich Low_complexity Low_complexity 2 85 0 4251 236 27 67 chr4 142527707 142528477 -59799870 + L1MB4 LINE L1 3968 4767 -1649 377 21 0 0 chr4 142528477 142528524 -59799823 + MADE1 DNA Mariner 33 79 -1 4251 236 27 67 chr4 142528524 142529458 -59798889 + L1MB4 LINE L1 4767 5577 -839 201 74 0 0 chr4 142529458 142529485 -59798862 + (TA)n Simple_repeat Simple_repeat 2 28 0 4251 236 27 67 chr4 142529485 142530294 -59798053 + L1MB4 LINE L1 5577 6416 0 2317 84 0 0 chr4 142530740 142531037 -59797310 - AluY SINE Alu -11 300 4 303 261 82 15 chr4 142532866 142533000 -59795347 - MER103 DNA DNA -10 156 14 27 62 0 0 chr4 142533003 142533051 -59795296 + AT_rich Low_complexity Low_complexity 1 48 0 443 156 0 9 chr4 142533270 142533379 -59794968 + (TA)n Simple_repeat Simple_repeat 1 108 0 219 152 50 40 chr4 142533519 142533618 -59794729 + (TA)n Simple_repeat Simple_repeat 2 101 0 21 0 0 0 chr4 142535040 142535061 -59793286 + AT_rich Low_complexity Low_complexity 1 21 0 220 412 10 10 chr4 142535512 142535609 -59792738 + L2 LINE L2 3140 3236 -36 230 305 116 11 chr4 142536431 142536526 -59791821 - MLT1L LTR MaLR -167 448 344 308 292 124 22 chr4 142536718 142536855 -59791492 + MER5B DNA MER1_type 26 176 -2 24 53 0 0 chr4 142539441 142539479 -59788868 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr4 142539645 142539667 -59788680 + AT_rich Low_complexity Low_complexity 1 22 0 1337 266 55 39 chr4 142539705 142540340 -59788007 - L1M4 LINE L1 -1327 4819 4175 1033 312 143 10 chr4 142540382 142540997 -59787350 - L1M4 LINE L1 -2076 4070 3374 26 82 0 0 chr4 142541713 142541774 -59786573 + AT_rich Low_complexity Low_complexity 1 61 0 2129 86 0 60 chr4 142542219 142542534 -59785813 - AluSp SINE Alu -11 302 7 206 86 71 29 chr4 142543883 142543953 -59784394 + (CA)n Simple_repeat Simple_repeat 1 73 0 256 157 63 57 chr4 142543981 142544140 -59784207 + (CA)n Simple_repeat Simple_repeat 2 161 0 311 421 19 0 chr4 142544390 142544661 -59783686 + HERVL LTR ERVL 3093 3368 -2286 482 279 128 43 chr4 142544671 142544929 -59783418 - L1MD2 LINE L1 -134 6225 5946 233 237 0 17 chr4 142544940 142544999 -59783348 + L1MC/D LINE L1 5782 5839 -520 2152 133 3 0 chr4 142545019 142545327 -59783020 - AluSx SINE Alu -3 309 1 323 234 13 0 chr4 142546417 142546494 -59781853 + MER114 LTR ERV 70 147 -501 2884 162 10 2 chr4 142546839 142547328 -59781019 - Tigger1 DNA MER2_type -1923 495 3 1800 189 31 3 chr4 142547544 142547899 -59780448 + MLT1A1 LTR MaLR 1 365 0 691 286 58 40 chr4 142549001 142549347 -59779000 - LTR16A1 LTR ERVL -14 443 92 3077 224 43 5 chr4 142550935 142551755 -59776592 - L1M4 LINE L1 -2789 3357 2507 2177 104 0 3 chr4 142551783 142552072 -59776275 - AluSx SINE Alu -24 288 1 273 260 14 0 chr4 142552443 142552516 -59775831 + (TA)n Simple_repeat Simple_repeat 1 74 0 198 0 0 0 chr4 142553386 142553408 -59774939 + (T)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr4 142553503 142553524 -59774823 + AT_rich Low_complexity Low_complexity 1 21 0 205 218 18 0 chr4 142554165 142554220 -59774127 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1642 224 90 52 chr4 142554269 142554882 -59773465 - MER92B LTR ERV1 0 636 1 21 36 0 0 chr4 142554902 142554930 -59773417 + AT_rich Low_complexity Low_complexity 1 28 0 966 201 16 11 chr4 142555445 142555634 -59772713 - MER20 DNA MER1_type -1 218 29 2024 197 19 0 chr4 142556058 142556423 -59771924 + Tigger7 DNA MER2_type 43 414 -319 4402 53 0 11 chr4 142556531 142557164 -59771183 - L1P2 LINE L1 -364 5790 5173 2242 98 0 13 chr4 142557164 142557479 -59770868 - AluY SINE Alu 0 311 1 4402 53 0 11 chr4 142557479 142557756 -59770591 - L1P2 LINE L1 -981 5173 4894 499 321 88 58 chr4 142557779 142558523 -59769824 - L2 LINE L2 -220 3052 2283 972 257 33 8 chr4 142558647 142558888 -59769459 - MLT1D LTR MaLR -258 247 1 423 286 114 29 chr4 142559074 142559347 -59769000 - L2 LINE L2 -1641 1673 1378 229 236 68 135 chr4 142560130 142560278 -59768069 - MIR SINE MIR -37 225 88 550 379 78 16 chr4 142561574 142562089 -59766258 + L2 LINE L2 1769 2315 -999 5934 194 30 40 chr4 142562094 142564285 -59764062 + L1MA9 LINE L1 3981 6165 -147 504 48 0 0 chr4 142564298 142564361 -59763986 + (GGAA)n Simple_repeat Simple_repeat 4 66 0 22 35 0 0 chr4 142565500 142565529 -59762818 + AT_rich Low_complexity Low_complexity 1 29 0 414 69 0 0 chr4 142566196 142566254 -59762093 + (CA)n Simple_repeat Simple_repeat 2 59 0 26 0 0 0 chr4 142566391 142566417 -59761930 + AT_rich Low_complexity Low_complexity 1 26 0 385 352 83 10 chr4 142566458 142566651 -59761696 - MIR SINE MIR 0 262 56 649 228 0 0 chr4 142567087 142567214 -59761133 + FLAM_A SINE Alu 4 130 -3 244 237 113 31 chr4 142567755 142567852 -59760495 + MIR SINE MIR 158 262 0 279 354 130 12 chr4 142567856 142568017 -59760330 - MIR SINE MIR -82 180 1 671 308 109 36 chr4 142568795 142569746 -59758601 + L1M4 LINE L1 3342 4362 -1784 21 36 0 0 chr4 142569787 142569815 -59758532 + AT_rich Low_complexity Low_complexity 1 28 0 299 254 0 0 chr4 142569815 142569886 -59758461 + L1M4 LINE L1 4517 4587 -1559 1182 22 0 0 chr4 142569919 142570053 -59758294 + AluY SINE Alu 168 301 -10 759 258 85 71 chr4 142570053 142570630 -59757717 + L1M4 LINE L1 4649 5233 -913 1574 180 18 11 chr4 142570694 142570977 -59757370 + AluJb SINE Alu 3 287 -25 405 309 88 25 chr4 142571383 142571907 -59756440 + L1ME LINE L1 3806 4362 -1784 21 36 0 0 chr4 142571948 142571976 -59756371 + AT_rich Low_complexity Low_complexity 1 28 0 270 268 0 0 chr4 142571976 142572047 -59756300 + L1ME LINE L1 4517 4587 -1559 1175 23 0 0 chr4 142572081 142572214 -59756133 + AluY SINE Alu 168 300 -11 810 258 83 69 chr4 142572214 142572791 -59755556 + L1ME LINE L1 4649 5233 -913 1772 154 7 11 chr4 142572855 142573135 -59755212 + AluJb SINE Alu 3 281 -31 520 342 75 14 chr4 142573243 142573670 -59754677 + L1ME LINE L1 5370 5822 -348 395 315 91 18 chr4 142574264 142574483 -59753864 + MIR SINE MIR 28 262 0 927 207 0 6 chr4 142574989 142575163 -59753184 - MLT1C LTR MaLR -4 463 291 382 239 9 62 chr4 142575215 142575357 -59752990 - MLT1A1 LTR MaLR -33 363 199 5258 150 17 1 chr4 142575365 142576898 -59751449 - L1PA16 LINE L1 -1 6165 4612 571 227 0 7 chr4 142576899 142577040 -59751307 + L1 LINE L1 4132 4271 -1875 513 201 136 92 chr4 142577058 142577242 -59751105 - MLT1A1 LTR MaLR -172 193 2 1258 164 41 101 chr4 142577243 142577560 -59750787 - MLT1C LTR MaLR -167 300 3 21 0 0 0 chr4 142577836 142577857 -59750490 + AT_rich Low_complexity Low_complexity 1 21 0 318 304 101 7 chr4 142578152 142578290 -59750057 + L2 LINE L2 3160 3310 -3 366 284 0 27 chr4 142578399 142578582 -59749765 + T-rich Low_complexity Low_complexity 3 180 0 249 332 67 47 chr4 142578758 142578951 -59749396 + MIR SINE MIR 66 262 0 24 85 0 0 chr4 142579277 142579336 -59749011 + AT_rich Low_complexity Low_complexity 1 59 0 21 82 0 0 chr4 142579460 142579509 -59748838 + AT_rich Low_complexity Low_complexity 1 49 0 893 190 0 0 chr4 142579509 142579672 -59748675 + MER3 DNA MER1_type 7 122 -87 247 233 10 39 chr4 142580288 142580391 -59747956 + (TAAA)n Simple_repeat Simple_repeat 2 101 0 181 337 22 43 chr4 142581103 142581195 -59747152 - L2 LINE L2 -9 3304 3215 1064 233 127 60 chr4 142581960 142582018 -59746329 - MLT1C LTR MaLR 0 467 414 2924 142 86 6 chr4 142582018 142582504 -59745843 - MER1A DNA MER1_type -2 525 1 1064 233 127 60 chr4 142582504 142582878 -59745469 - MLT1C LTR MaLR -53 414 6 199 100 0 0 chr4 142583502 142583532 -59744815 - L2 LINE L2 0 3313 3284 254 359 46 15 chr4 142583971 142584102 -59744245 - L2 LINE L2 -203 3069 2935 838 319 45 29 chr4 142584144 142584564 -59743783 - L2 LINE L2 -454 2860 2434 450 0 0 0 chr4 142585036 142585086 -59743261 + (CA)n Simple_repeat Simple_repeat 2 51 0 1549 177 28 103 chr4 142585105 142585540 -59742807 - MLT2B1 LTR ERVL -56 464 63 645 175 66 0 chr4 142585560 142585697 -59742650 - L1MA8 LINE L1 -1 6290 6145 450 209 2 9 chr4 142585697 142585800 -59742547 - MLT2B2 LTR ERVL -314 100 1 234 258 41 0 chr4 142586947 142587044 -59741303 + (TA)n Simple_repeat Simple_repeat 2 102 0 249 340 75 11 chr4 142587472 142587566 -59740781 + L2 LINE L2 2978 3077 -236 225 159 0 0 chr4 142587566 142587610 -59740737 + (CA)n Simple_repeat Simple_repeat 2 45 0 184 323 80 45 chr4 142587643 142587844 -59740503 + L2 LINE L2 3104 3311 -2 1805 143 11 0 chr4 142587976 142588255 -59740092 + AluSx SINE Alu 1 282 -30 242 56 28 0 chr4 142588258 142588294 -59740053 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 321 68 0 0 chr4 142589791 142589835 -59738512 + (TG)n Simple_repeat Simple_repeat 2 45 0 987 171 57 0 chr4 142589840 142590033 -59738314 - Tigger2 DNA MER2_type 0 2718 2515 * 3659 167 28 12 chr4 142590032 142590678 -59737669 - Tigger2 DNA MER2_type -1734 984 329 1889 220 57 37 chr4 142590678 142590748 -59737599 + L1MC3 LINE L1 7230 7297 -488 1911 217 30 22 chr4 142590748 142591209 -59737138 - MLT1C LTR MaLR 0 467 3 1889 220 57 37 chr4 142591209 142591683 -59736664 + L1MC3 LINE L1 7297 7785 0 233 258 61 0 chr4 142591694 142591760 -59736587 + MIR SINE MIR 172 241 -21 26 74 0 0 chr4 142591776 142591830 -59736517 + AT_rich Low_complexity Low_complexity 1 54 0 647 290 75 81 chr4 142592350 142592890 -59735457 + L2 LINE L2 2768 3308 -5 1453 186 58 4 chr4 142593119 142593393 -59734954 - AluJb SINE Alu -18 294 6 751 305 140 10 chr4 142595237 142595390 -59732957 + L2 LINE L2 1631 1763 -1551 294 106 0 0 chr4 142595390 142595437 -59732910 + (TG)n Simple_repeat Simple_repeat 2 48 0 751 305 140 10 chr4 142595437 142595690 -59732657 + L2 LINE L2 1763 2090 -1224 2157 119 0 3 chr4 142596508 142596802 -59731545 - AluSq SINE Alu -20 293 1 25 51 0 0 chr4 142596995 142597034 -59731313 + AT_rich Low_complexity Low_complexity 1 39 0 35 40 0 40 chr4 142597098 142597173 -59731174 + AT_rich Low_complexity Low_complexity 1 72 0 27 29 0 0 chr4 142597198 142597232 -59731115 + AT_rich Low_complexity Low_complexity 1 34 0 32 26 0 0 chr4 142597241 142597280 -59731067 + AT_rich Low_complexity Low_complexity 1 39 0 856 240 65 13 chr4 142598243 142598652 -59729695 - MER34 LTR ERV1 0 542 71 234 0 0 0 chr4 142598652 142598678 -59729669 + (TTG)n Simple_repeat Simple_repeat 2 27 0 856 240 65 13 chr4 142598678 142598735 -59729612 - MER34 LTR ERV1 -471 71 18 2399 89 0 0 chr4 142598889 142599193 -59729154 - AluY SINE Alu -7 304 1 2009 152 0 3 chr4 142599239 142599536 -59728811 - AluSx SINE Alu -16 296 1 2015 158 30 108 chr4 142600450 142600856 -59727491 - MSTB LTR MaLR 0 426 59 2320 94 0 0 chr4 142600856 142601164 -59727183 - AluY SINE Alu -3 308 1 2015 158 30 108 chr4 142601164 142601219 -59727128 - MSTB LTR MaLR -367 59 1 21 0 0 0 chr4 142601445 142601466 -59726881 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 142602679 142602707 -59725640 + AT_rich Low_complexity Low_complexity 1 28 0 299 254 138 48 chr4 142603092 142603281 -59725066 + LTR37B LTR ERV1 7 212 -256 1663 209 22 19 chr4 142603403 142603767 -59724580 - MLT1A1 LTR MaLR 0 365 1 2419 279 82 29 chr4 142603951 142604862 -59723485 - L1MCa LINE L1 -5115 930 38 23 68 0 0 chr4 142604971 142605015 -59723332 + AT_rich Low_complexity Low_complexity 1 44 0 2113 111 0 0 chr4 142605018 142605327 -59723020 + AluSg SINE Alu 1 309 0 269 334 56 18 chr4 142605329 142605666 -59722681 + L1ME LINE L1 5480 5837 -327 23 0 0 0 chr4 142605882 142605905 -59722442 + AT_rich Low_complexity Low_complexity 1 23 0 209 309 143 42 chr4 142606043 142606260 -59722087 + MIR SINE MIR 23 261 -1 1842 194 17 0 chr4 142606392 142606737 -59721610 + MLT1B LTR MaLR 38 388 -2 21 0 0 0 chr4 142606853 142606874 -59721473 + AT_rich Low_complexity Low_complexity 1 21 0 218 126 0 138 chr4 142606936 142607023 -59721324 + (TTAA)n Simple_repeat Simple_repeat 1 75 0 23 54 0 0 chr4 142607264 142607301 -59721046 + AT_rich Low_complexity Low_complexity 1 37 0 1087 125 0 0 chr4 142607374 142607526 -59720821 - AluSq SINE Alu -17 296 145 32 0 0 0 chr4 142607711 142607743 -59720604 + AT_rich Low_complexity Low_complexity 1 32 0 2087 128 10 0 chr4 142608411 142608707 -59719640 + AluSx SINE Alu 1 299 -13 1645 140 35 0 chr4 142609504 142609761 -59718586 - AluSx SINE Alu -9 303 38 270 335 23 17 chr4 142610214 142610387 -59717960 - L1ME3A LINE L1 -10 6160 5987 692 210 97 6 chr4 142610544 142610662 -59717685 - MER34 LTR ERV1 -333 209 68 261 0 0 0 chr4 142610662 142610691 -59717656 + (TTG)n Simple_repeat Simple_repeat 2 30 0 692 210 97 6 chr4 142610691 142610748 -59717599 - MER34 LTR ERV1 -474 68 18 2342 92 0 3 chr4 142610902 142611207 -59717140 - AluY SINE Alu -7 304 1 2001 152 0 3 chr4 142611253 142611549 -59716798 - AluSx SINE Alu -17 295 1 2032 158 30 108 chr4 142612463 142612869 -59715478 - MSTB LTR MaLR 0 426 59 2356 97 0 0 chr4 142612869 142613177 -59715170 - AluY SINE Alu -3 308 1 2032 158 30 108 chr4 142613177 142613232 -59715115 - MSTB LTR MaLR -367 59 1 21 0 0 0 chr4 142613459 142613480 -59714867 + AT_rich Low_complexity Low_complexity 1 21 0 3706 28 3 1 chr4 142613676 142614134 -59714213 + L1HS LINE L1 5693 6155 0 28 0 0 0 chr4 142615111 142615139 -59713208 + AT_rich Low_complexity Low_complexity 1 28 0 3812 181 57 13 chr4 142615409 142616229 -59712118 - L1MC2 LINE L1 0 6344 5489 496 279 117 45 chr4 142616246 142616622 -59711725 - MER20B DNA MER1_type -39 744 342 3370 174 3 9 chr4 142616644 142617224 -59711123 - MER6A DNA MER2_type -27 578 2 23 54 0 0 chr4 142619027 142619064 -59709283 + AT_rich Low_complexity Low_complexity 1 37 0 885 149 26 20 chr4 142619221 142619416 -59708931 - L1MA4A LINE L1 0 6303 6108 6471 278 45 12 chr4 142619416 142621241 -59707106 - L1M2 LINE L1 -4958 1891 7 2729 286 40 18 chr4 142621601 142622369 -59705978 + L1PA13 LINE L1 2 786 -6001 2164 258 5 16 chr4 142622415 142622992 -59705355 + L1PA13 LINE L1 1354 1924 -4863 2349 120 27 0 chr4 142623003 142623406 -59704941 - L1P LINE L1 -718 5413 5002 38431 71 1 3 chr4 142623415 142629264 -59699083 - L1PA5 LINE L1 -1 6153 317 685 102 0 0 chr4 142629265 142629353 -59698994 - L1PA5 LINE L1 -6048 98 11 2200 150 0 0 chr4 142629360 142629721 -59698626 - L1P LINE L1 -1126 5020 4660 13335 246 18 30 chr4 142629726 142629738 -59698609 + L1PA8A LINE L1 983 994 -4995 2001 126 0 7 chr4 142629738 142630039 -59698308 + L1PA8A LINE L1 5656 5954 -1 13335 246 18 30 chr4 142630039 142633957 -59694390 + L1PA8A LINE L1 994 4941 -1048 1255 171 21 138 chr4 142633957 142634297 -59694050 - AluJb SINE Alu -2 300 1 13335 246 18 30 chr4 142634297 142634646 -59693701 + L1PA8A LINE L1 4941 5292 -697 3954 177 27 9 chr4 142634643 142635648 -59692699 + L1PA15 LINE L1 5080 6152 -16 * 22 35 0 0 chr4 142635656 142635685 -59692662 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 142635842 142635871 -59692476 + AT_rich Low_complexity Low_complexity 1 29 0 24 77 0 0 chr4 142636180 142636232 -59692115 + AT_rich Low_complexity Low_complexity 1 52 0 13047 165 22 13 chr4 142638221 142640616 -59687731 - Tigger1 DNA MER2_type 0 2418 2 23 54 0 0 chr4 142640806 142640843 -59687504 + AT_rich Low_complexity Low_complexity 1 37 0 252 148 61 35 chr4 142641375 142641490 -59686857 + (TA)n Simple_repeat Simple_repeat 2 119 0 374 138 0 11 chr4 142641630 142641717 -59686630 + (TA)n Simple_repeat Simple_repeat 1 86 0 30 59 0 0 chr4 142641935 142641986 -59686361 + AT_rich Low_complexity Low_complexity 1 51 0 294 261 82 15 chr4 142641986 142642120 -59686227 + MER103 DNA DNA 14 156 -10 21 36 0 0 chr4 142642900 142642928 -59685419 + AT_rich Low_complexity Low_complexity 1 28 0 270 56 0 0 chr4 142643304 142643340 -59685007 + (CA)n Simple_repeat Simple_repeat 1 36 0 34 0 0 0 chr4 142643670 142643704 -59684643 + AT_rich Low_complexity Low_complexity 1 34 0 24 77 0 0 chr4 142644806 142644858 -59683489 + AT_rich Low_complexity Low_complexity 1 52 0 1124 50 0 0 chr4 142645995 142646136 -59682211 - L1P LINE L1 -2439 3707 3567 * 5401 31 0 0 chr4 142646134 142646788 -59681559 + L1P LINE L1 4718 5371 -775 441 68 68 8 chr4 142647433 142647551 -59680796 + (TA)n Simple_repeat Simple_repeat 1 125 0 2198 102 3 0 chr4 142647564 142647877 -59680470 - AluSg SINE Alu 0 314 1 21 0 0 0 chr4 142649382 142649403 -59678944 + AT_rich Low_complexity Low_complexity 1 21 0 318 342 63 81 chr4 142649475 142649594 -59678753 - L1MDa LINE L1 -4500 2040 1920 1631 162 27 37 chr4 142649594 142649890 -59678457 + AluSx SINE Alu 1 293 -19 318 342 63 81 chr4 142649890 142650153 -59678194 - L1MDa LINE L1 -4620 1920 1665 734 114 40 13 chr4 142650278 142650427 -59677920 + GA-rich Low_complexity Low_complexity 1 153 0 219 189 0 0 chr4 142650439 142650492 -59677855 + GA-rich Low_complexity Low_complexity 4 56 0 * 342 99 14 28 chr4 142650486 142650557 -59677790 + (GAAA)n Simple_repeat Simple_repeat 1 70 0 2314 172 7 32 chr4 142650563 142651004 -59677343 - Tigger2a DNA MER2_type -1 433 4 28 29 0 0 chr4 142651290 142651325 -59677022 + AT_rich Low_complexity Low_complexity 1 35 0 41643 39 27 2 chr4 142651326 142657325 -59671022 - L1PA2 LINE L1 -3 6152 1 186 299 0 15 chr4 142658565 142658632 -59669715 - MIR SINE MIR -3 259 194 5985 214 7 6 chr4 142658661 142660748 -59667599 - L1PA15 LINE L1 -7 6158 4076 1987 144 77 50 chr4 142660748 142661165 -59667182 - MSTA LTR MaLR 0 428 1 5985 214 7 6 chr4 142661165 142661214 -59667133 - L1PA15 LINE L1 -2089 4076 4029 1849 164 24 0 chr4 142661246 142661544 -59666803 + AluSx SINE Alu 1 305 -7 2737 225 20 17 chr4 142661905 142662564 -59665783 + MER67B LTR ERV1 1 661 0 2496 156 2 0 chr4 142662815 142663233 -59665114 - L1PA8A LINE L1 -2313 3833 3415 * 9496 105 28 2 chr4 142663230 142665195 -59663152 + L1PA8A LINE L1 3853 5867 -264 21 0 0 0 chr4 142666179 142666200 -59662147 + AT_rich Low_complexity Low_complexity 1 21 0 231 143 20 0 chr4 142666894 142666943 -59661404 - L1MC4 LINE L1 -1341 6701 6652 1263 221 32 25 chr4 142667264 142667549 -59660798 + AluJo SINE Alu 9 295 -17 587 231 11 43 chr4 142667688 142667874 -59660473 + L1MC4a LINE L1 6334 6513 -1295 1803 257 67 16 chr4 142667897 142668524 -59659823 + L1MC4a LINE L1 7137 7795 -13 521 291 25 25 chr4 142668545 142668786 -59659561 + L1MC3 LINE L1 6039 6279 -1506 1644 254 31 53 chr4 142668789 142668968 -59659379 - L1MCa LINE L1 -2578 3551 3370 1963 132 35 44 chr4 142668968 142669308 -59659039 + MER1B DNA MER1_type 1 337 0 1644 254 31 53 chr4 142669308 142669861 -59658486 - L1MCa LINE L1 -2759 3370 2835 1165 263 30 38 chr4 142669908 142670618 -59657729 - L1MCa LINE L1 -3537 2592 1928 1372 197 80 37 chr4 142670622 142670972 -59657375 - MLT1A1 LTR MaLR 0 365 1 2384 189 29 7 chr4 142670972 142671422 -59656925 - MLT1A1-int LTR MaLR 0 1735 1276 1190 238 110 30 chr4 142671427 142672272 -59656075 - L1MCa LINE L1 -4315 1814 807 1188 267 62 0 chr4 142672272 142672579 -59655768 - MSTD LTR MaLR 0 396 71 1844 177 36 3 chr4 142672613 142672974 -59655373 - L1PA10 LINE L1 -12 6156 5784 6057 231 16 46 chr4 142673074 142675062 -59653285 - L1P3 LINE L1 -3784 2677 591 2114 70 29 0 chr4 142675062 142675335 -59653012 + AluY SINE Alu 1 281 -30 6057 231 16 46 chr4 142675335 142675899 -59652448 - L1P3 LINE L1 -5870 591 11 313 227 53 0 chr4 142675900 142675975 -59652372 - MSTD LTR MaLR -349 79 1 233 146 0 24 chr4 142675975 142676016 -59652331 - L1MCa LINE L1 -5318 811 772 254 164 0 16 chr4 142676152 142676213 -59652134 + (TA)n Simple_repeat Simple_repeat 2 61 0 6653 150 39 19 chr4 142676300 142676738 -59651609 + Tigger3b DNA MER2_type 2 430 -2598 2151 114 48 31 chr4 142676738 142677096 -59651251 - THE1B LTR MaLR 0 364 1 6653 150 39 19 chr4 142677096 142677862 -59650485 + Tigger3b DNA MER2_type 430 1230 -1 22 70 0 0 chr4 142678140 142678183 -59650164 + AT_rich Low_complexity Low_complexity 1 43 0 239 246 56 72 chr4 142679791 142679986 -59648361 - L1MCa LINE L1 -3681 2448 2257 293 379 23 14 chr4 142680097 142680311 -59648036 - L1MCa LINE L1 -5423 696 481 301 134 0 49 chr4 142680337 142680419 -59647928 + (TTCC)n Simple_repeat Simple_repeat 4 81 0 1970 136 42 31 chr4 142680583 142680943 -59647404 + THE1B LTR MaLR 1 364 0 10989 111 11 0 chr4 142680944 142682506 -59645841 + THE1B-int LTR MaLR 2 1580 0 1702 184 30 33 chr4 142682506 142682871 -59645476 + THE1B LTR MaLR 1 364 0 388 211 14 0 chr4 142683901 142683972 -59644375 + Tigger5 DNA MER2_type 1 72 -2251 3448 168 11 3 chr4 142684072 142684721 -59643626 + L1P LINE L1 4708 5361 -785 648 201 14 21 chr4 142684721 142684865 -59643482 - MLT1D LTR MaLR -361 144 2 776 168 17 11 chr4 142684895 142685074 -59643273 + CT-rich Low_complexity Low_complexity 1 180 0 3854 210 10 17 chr4 142786382 142787794 -59540553 - L1P5 LINE L1 -498 5653 4255 2497 65 3 0 chr4 142787921 142788227 -59540120 - AluY SINE Alu -4 307 1 317 373 129 34 chr4 142788248 142788718 -59539629 + L2 LINE L2 2561 3078 -194 730 335 60 45 chr4 142789375 142789912 -59538435 + ERVL LTR ERVL 1032 1576 -3420 1915 266 21 44 chr4 142790129 142790787 -59537560 + L1MB7 LINE L1 16 658 -5884 3580 220 39 14 chr4 142790814 142792336 -59536011 + L1MB7 LINE L1 5128 6681 -1 619 314 51 51 chr4 142792381 142792735 -59535612 + ERVL LTR ERVL 1891 2244 -2752 180 0 0 0 chr4 142792773 142792793 -59535554 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 6248 157 43 3 chr4 142792793 142794467 -59533880 - L1PA10 LINE L1 -21 6147 4396 639 333 21 48 chr4 142794522 142794855 -59533492 + ERVL LTR ERVL 2388 2711 -2285 266 237 45 28 chr4 142794994 142795124 -59533223 + ERVL LTR ERVL 5170 5346 -363 1137 188 9 45 chr4 142795129 142795353 -59532994 + AluJb SINE Alu 5 220 -92 230 0 33 0 chr4 142795353 142795383 -59532964 + (TG)n Simple_repeat Simple_repeat 2 32 0 288 167 33 0 chr4 142795872 142795932 -59532415 + L1 LINE L1 4497 4558 -1588 272 233 70 23 chr4 142795933 142796019 -59532328 - L2 LINE L2 -3 3310 3221 24 77 0 0 chr4 142796557 142796609 -59531738 + AT_rich Low_complexity Low_complexity 1 52 0 2013 134 3 10 chr4 142797675 142797974 -59530373 + AluSx SINE Alu 1 297 -15 21 36 0 0 chr4 142802838 142802866 -59525481 + AT_rich Low_complexity Low_complexity 1 28 0 2124 125 0 0 chr4 142803539 142803835 -59524512 - AluSx SINE Alu -16 296 1 180 0 0 0 chr4 142803921 142803941 -59524406 + (TTG)n Simple_repeat Simple_repeat 2 21 0 28 0 0 0 chr4 142804326 142804354 -59523993 + AT_rich Low_complexity Low_complexity 1 28 0 423 230 40 26 chr4 142804394 142804546 -59523801 - MER69 DNA AcHobo -9 2517 2364 2330 128 27 8 chr4 142804609 142804975 -59523372 - THE1C LTR MaLR 0 375 3 8802 145 39 42 chr4 142804977 142806560 -59521787 - THE1C-int LTR MaLR 0 1580 3 2138 152 33 14 chr4 142806562 142806930 -59521417 - THE1C LTR MaLR 0 375 1 1749 197 23 8 chr4 142806945 142807280 -59521067 + Tigger1 DNA MER2_type 27 369 -2049 2075 209 70 17 chr4 142807280 142807418 -59520929 - LTR22 LTR ERVK 0 509 380 186 43 0 0 chr4 142807418 142807441 -59520906 + (CAG)n Simple_repeat Simple_repeat 3 25 0 2075 209 70 17 chr4 142807441 142807785 -59520562 - LTR22 LTR ERVK -129 380 1 1749 197 23 8 chr4 142807785 142807800 -59520547 + Tigger1 DNA MER2_type 369 382 -2036 22893 95 4 3 chr4 142807804 142810866 -59517481 - HERVK22 LTR ERVK -8 6829 3764 18590 104 25 1 chr4 142810845 142813449 -59514898 - HERVK22 LTR ERVK -4171 2666 1 * 1561 195 81 19 chr4 142813458 142813910 -59514437 - LTR22 LTR ERVK -6 452 1 1212 152 39 30 chr4 142813915 142814145 -59514202 + Tigger1 DNA MER2_type 366 597 -1821 * 2509 133 28 16 chr4 142814136 142814564 -59513783 + Tigger1 DNA MER2_type 1296 1728 -690 22 70 0 0 chr4 142814702 142814745 -59513602 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr4 142814906 142814938 -59513409 + AT_rich Low_complexity Low_complexity 1 32 0 941 235 87 63 chr4 142815746 142816123 -59512224 + MER39 LTR ERV1 186 707 0 396 337 10 50 chr4 142817275 142817336 -59511011 - MIR SINE MIR -13 195 133 1941 215 49 26 chr4 142817336 142817842 -59510505 + MLT2B1 LTR ERVL 1 518 -2 396 337 10 50 chr4 142817842 142817978 -59510369 - MIR SINE MIR -75 133 3 22 99 0 0 chr4 142819076 142819147 -59509200 + AT_rich Low_complexity Low_complexity 1 71 0 347 301 77 0 chr4 142820160 142820303 -59508044 + L2 LINE L2 3160 3313 0 31 26 0 0 chr4 142820339 142820377 -59507970 + AT_rich Low_complexity Low_complexity 1 38 0 223 387 68 39 chr4 142820419 142820698 -59507649 - L2 LINE L2 -95 3177 2891 4935 172 48 13 chr4 142820702 142822020 -59506327 + L1MA8 LINE L1 4924 6291 0 352 337 58 58 chr4 142822036 142822366 -59505981 - L2 LINE L2 -430 2884 2552 210 118 0 0 chr4 142822366 142822400 -59505947 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 352 337 58 58 chr4 142822400 142822416 -59505931 - L2 LINE L2 -761 2553 2538 233 374 43 0 chr4 142822544 142822683 -59505664 - L2 LINE L2 -234 3079 2935 21 71 0 0 chr4 142822817 142822859 -59505488 + AT_rich Low_complexity Low_complexity 1 42 0 410 350 61 24 chr4 142824196 142824442 -59503905 - MIR SINE MIR -2 260 6 302 278 45 23 chr4 142825811 142825944 -59502403 + L1ME4a LINE L1 5986 6121 0 618 286 99 47 chr4 142827210 142827615 -59500732 - MLT1J2 LTR MaLR -24 426 1 438 313 54 27 chr4 142828434 142828658 -59499689 + L1ME LINE L1 5513 5742 -379 233 234 0 0 chr4 142828655 142828719 -59499628 - L1PA15 LINE L1 -159 6006 5943 * 268 295 221 0 chr4 142828801 142828923 -59499424 + MIR SINE MIR 28 176 -86 2808 76 95 0 chr4 142828948 142829357 -59498990 + LTR7 LTR ERV1 1 448 -2 19601 96 30 17 chr4 142829359 142832306 -59496041 + HERVH LTR ERV1 1 2987 -4726 913 128 20 0 chr4 142832300 142832448 -59495899 + HERVH LTR ERV1 3140 3290 -4423 * 8694 140 32 45 chr4 142832438 142834117 -59494230 + HERVH LTR ERV1 3492 5149 -2564 1343 135 23 0 chr4 142834118 142834333 -59494014 + HERVH LTR ERV1 5600 5819 -1894 * 2484 82 48 13 chr4 142834331 142834710 -59493637 + HERVH LTR ERV1 7322 7713 0 2717 76 101 0 chr4 142834710 142835117 -59493230 + LTR7 LTR ERV1 1 448 -2 1151 170 0 0 chr4 142835121 142835309 -59493038 - L1PA15 LINE L1 -34 6131 5944 24 0 0 0 chr4 142835504 142835528 -59492819 + AT_rich Low_complexity Low_complexity 1 24 0 251 215 215 0 chr4 142836418 142836511 -59491836 - MLT1I LTR MaLR 0 409 297 3438 125 37 2 chr4 142836822 142837357 -59490990 - MER41C LTR ERV1 0 554 1 207 162 0 0 chr4 142839144 142839181 -59489166 + (CA)n Simple_repeat Simple_repeat 2 38 0 2307 176 93 145 chr4 142839350 142840156 -59488191 - L1M4c LINE L1 -5603 781 18 29 0 0 0 chr4 142840273 142840302 -59488045 + AT_rich Low_complexity Low_complexity 1 29 0 1219 201 42 72 chr4 142841033 142841435 -59486912 - MLT1B LTR MaLR 0 390 1 24 32 0 0 chr4 142841463 142841494 -59486853 + AT_rich Low_complexity Low_complexity 1 31 0 562 248 68 73 chr4 142841579 142841785 -59486562 - AluJo SINE Alu -85 227 23 1879 113 96 7 chr4 142841785 142842067 -59486280 + AluSx SINE Alu 1 307 -5 215 341 52 22 chr4 142842121 142842256 -59486091 + L2 LINE L2 3171 3309 -4 1518 109 0 14 chr4 142842978 142843188 -59485159 - AluSc SINE Alu -17 292 86 1866 206 65 18 chr4 142843337 142843783 -59484564 + MLT1C LTR MaLR 1 467 0 523 269 23 116 chr4 142843846 142844147 -59484200 + MLT1G LTR MaLR 104 376 -214 1441 179 4 0 chr4 142844153 142844415 -59483932 - L1M2 LINE L1 -473 5818 5556 580 149 18 0 chr4 142844416 142844530 -59483817 + L1MA7 LINE L1 6166 6281 -10 397 226 108 36 chr4 142844544 142844748 -59483599 + MLT1F LTR MaLR 319 595 0 966 205 5 0 chr4 142844779 142844964 -59483383 + MER5A DNA MER1_type 3 188 -1 34 119 0 0 chr4 142846324 142846526 -59481821 + AT_rich Low_complexity Low_complexity 1 202 0 2301 158 3 11 chr4 142846531 142846904 -59481443 + THE1C LTR MaLR 6 375 0 1285 79 22 0 chr4 142846905 142847083 -59481264 + THE1C-int LTR MaLR 2 183 -1397 234 341 0 0 chr4 142847080 142847209 -59481138 - L1 LINE L1 -1096 5050 4922 * 22 35 0 0 chr4 142847456 142847485 -59480862 + AT_rich Low_complexity Low_complexity 1 29 0 338 328 31 72 chr4 142847878 142848168 -59480179 + L2 LINE L2 2970 3247 -66 227 315 0 11 chr4 142848356 142848445 -59479902 - MLT1J LTR MaLR -325 186 99 215 135 0 0 chr4 142848540 142848577 -59479770 + L2 LINE L2 3277 3313 0 13157 150 28 15 chr4 142849706 142852091 -59476256 + Tigger1 DNA MER2_type 2 2417 -1 27 0 0 0 chr4 142852192 142852219 -59476128 + AT_rich Low_complexity Low_complexity 1 27 0 1018 167 17 11 chr4 142852662 142852842 -59475505 - THE1C LTR MaLR -194 181 1 206 339 0 97 chr4 142853267 142853391 -59474956 + MIR SINE MIR 4 115 -147 15274 120 5 71 chr4 142853396 142853518 -59474829 - L1P LINE L1 -1313 4833 4705 2066 134 0 0 chr4 142853518 142853808 -59474539 + AluSq SINE Alu 9 298 -15 15274 120 5 71 chr4 142853808 142856570 -59471777 - L1P LINE L1 -1441 4705 2139 7997 77 24 7 chr4 142856570 142858460 -59469887 + L1PA7 LINE L1 4258 6153 -1 3989 131 26 42 chr4 142858460 142859180 -59469167 + L1PB3 LINE L1 5424 6144 -10 361 241 24 0 chr4 142859285 142859368 -59468979 + MER94 DNA DNA 1 85 -49 399 335 58 27 chr4 142859948 142860136 -59468211 + L2 LINE L2 3118 3311 -2 546 61 0 24 chr4 142860203 142860285 -59468062 - MADE1 DNA Mariner 0 80 1 270 180 0 0 chr4 142860631 142860692 -59467655 + (TG)n Simple_repeat Simple_repeat 2 62 0 991 153 206 9 chr4 142860738 142860966 -59467381 - AluJb SINE Alu -37 275 3 2236 67 7 3 chr4 142860996 142861300 -59467047 - AluY SINE Alu 0 305 1 27 62 0 0 chr4 142861811 142861859 -59466488 + AT_rich Low_complexity Low_complexity 1 48 0 22 56 0 0 chr4 142861933 142861969 -59466378 + AT_rich Low_complexity Low_complexity 1 36 0 3935 190 21 51 chr4 142862724 142863723 -59464624 - LTR5 LTR ERVK 0 969 1 21 82 0 0 chr4 142864918 142864967 -59463380 + AT_rich Low_complexity Low_complexity 1 49 0 609 107 0 0 chr4 142867165 142867249 -59461098 + AluS SINE Alu 6 89 -223 2098 125 0 0 chr4 142867168 142867465 -59460882 + AluSx SINE Alu 9 305 -7 22 0 0 0 chr4 142867614 142867636 -59460711 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr4 142869180 142869206 -59459141 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 142869678 142869699 -59458648 + AT_rich Low_complexity Low_complexity 1 21 0 375 23 0 0 chr4 142870887 142870931 -59457416 + (TA)n Simple_repeat Simple_repeat 1 44 0 2601 235 114 21 chr4 142870964 142871761 -59456586 - L1MD1 LINE L1 -1 6635 5765 353 179 128 13 chr4 142871761 142871839 -59456508 + MLT1B LTR MaLR 1 87 -380 1116 229 3 62 chr4 142871909 142872232 -59456115 + MLT1B LTR MaLR 87 390 0 3472 236 27 71 chr4 142872234 142873797 -59454550 - L1MD1 LINE L1 -816 5724 4276 504 256 60 6 chr4 142873806 142873974 -59454373 - L1MD1 LINE L1 -4983 1557 1381 1029 264 126 76 chr4 142873983 142874550 -59453797 - L1MD1 LINE L1 -5759 781 19 399 304 59 73 chr4 142875402 142875810 -59452537 + HAL1 LINE L1 38 439 -2068 274 189 0 27 chr4 142876027 142876101 -59452246 + (TA)n Simple_repeat Simple_repeat 1 72 0 408 229 143 38 chr4 142876187 142876397 -59451950 + HAL1 LINE L1 970 1201 -1306 5092 174 20 10 chr4 142876412 142877310 -59451037 + L1M1 LINE L1 12 918 -6647 3242 114 32 12 chr4 142877313 142877872 -59450475 + L1MA3 LINE L1 5736 6305 0 430 245 61 38 chr4 142877904 142878116 -59450231 + HAL1 LINE L1 1246 1462 -1045 351 0 0 0 chr4 142878261 142878300 -59450047 + (GA)n Simple_repeat Simple_repeat 2 40 0 277 78 0 39 chr4 142878466 142878517 -59449830 + (GAAA)n Simple_repeat Simple_repeat 4 52 0 671 299 51 41 chr4 142878884 142879198 -59449149 + Charlie2 DNA MER1_type 7 323 -2539 458 293 57 18 chr4 142879216 142879550 -59448797 + Charlie2 DNA MER1_type 1883 2229 -633 21 82 0 0 chr4 142880315 142880364 -59447983 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 142880754 142880775 -59447572 + AT_rich Low_complexity Low_complexity 1 21 0 14856 227 38 23 chr4 142881235 142885356 -59442991 - L1PA15 LINE L1 -2 6814 2429 2119 105 7 3 chr4 142885356 142885650 -59442697 - AluSx SINE Alu -17 295 1 14856 227 38 23 chr4 142885650 142888117 -59440230 - L1PA15 LINE L1 -4387 2429 1 207 418 75 29 chr4 142888386 142888733 -59439614 - L2 LINE L2 -1904 1410 1048 2443 120 3 21 chr4 142889365 142889747 -59438600 - THE1C LTR MaLR 0 375 1 9230 120 44 45 chr4 142889747 142891329 -59437018 - THE1C-int LTR MaLR 0 1580 1 2297 134 30 3 chr4 142891329 142891694 -59436653 - THE1C LTR MaLR 0 375 1 249 348 43 14 chr4 142891957 142892095 -59436252 - L2 LINE L2 -2506 808 667 28 0 0 0 chr4 142892135 142892163 -59436184 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 142892427 142892451 -59435896 + AT_rich Low_complexity Low_complexity 1 24 0 576 342 60 17 chr4 142893214 142893512 -59434835 - L2 LINE L2 -791 2523 2213 225 290 0 0 chr4 142893526 142893588 -59434759 + (TA)n Simple_repeat Simple_repeat 2 63 0 240 35 0 0 chr4 142894687 142894716 -59433631 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1982 112 0 51 chr4 142895377 142895691 -59432656 - AluSp SINE Alu -13 300 3 303 62 0 0 chr4 142895695 142895743 -59432604 - Alu SINE Alu 0 300 253 24 67 0 0 chr4 142895981 142896026 -59432321 + AT_rich Low_complexity Low_complexity 1 45 0 2271 179 45 0 chr4 142897261 142897657 -59430690 - LTR42 LTR ERVL -1 494 81 34 84 0 0 chr4 142898536 142898619 -59429728 + AT_rich Low_complexity Low_complexity 1 83 0 224 191 0 0 chr4 142899107 142899149 -59429198 - L2 LINE L2 0 3313 3272 1560 195 10 0 chr4 142900067 142900359 -59427988 - AluJo SINE Alu -17 295 1 21 0 0 0 chr4 142900438 142900459 -59427888 + AT_rich Low_complexity Low_complexity 1 21 0 284 230 10 50 chr4 142900630 142900730 -59427617 + A-rich Low_complexity Low_complexity 5 100 0 2407 179 7 5 chr4 142900823 142901247 -59427100 - MER61B LTR ERV1 0 425 1 251 159 11 57 chr4 142901295 142901383 -59426964 + (CATATA)n Simple_repeat Simple_repeat 3 86 0 22 0 0 0 chr4 142901420 142901442 -59426905 + AT_rich Low_complexity Low_complexity 1 22 0 1430 282 82 23 chr4 142901457 142902049 -59426298 - L1ME3A LINE L1 -23 6147 5533 301 341 38 8 chr4 142902248 142902380 -59425967 - L1ME3A LINE L1 -825 5321 5186 217 277 0 0 chr4 142902732 142902815 -59425532 + T-rich Low_complexity Low_complexity 1 83 0 2337 35 0 0 chr4 142902815 142903098 -59425249 - L1PA2 LINE L1 0 6155 5873 2121 12 0 0 chr4 142903098 142903339 -59425008 + L1PA2 LINE L1 5647 5887 -268 208 250 275 0 chr4 142903356 142903436 -59424911 + L2 LINE L2 1931 2032 -1282 1706 293 56 26 chr4 142903439 142904085 -59424262 + MER76 LTR ERV 1 665 -23 455 311 123 5 chr4 142904107 142904326 -59424021 + L2 LINE L2 2046 2290 -1024 1223 231 57 20 chr4 142904485 142904835 -59423512 + MLT1A1 LTR MaLR 1 363 -2 26 0 0 0 chr4 142905198 142905224 -59423123 + AT_rich Low_complexity Low_complexity 1 26 0 1256 174 53 4 chr4 142905262 142905527 -59422820 - L1MC1 LINE L1 -17 6316 6039 704 83 67 0 chr4 142905527 142905647 -59422700 + Tigger7 DNA MER2_type 2282 2409 -78 851 233 23 41 chr4 142905653 142905872 -59422475 - MER8 DNA MER2_type -24 215 1 322 222 0 32 chr4 142905891 142905954 -59422393 + Tigger7 DNA MER2_type 2427 2487 0 264 324 29 22 chr4 142905968 142906104 -59422243 + MER92C LTR ERV1 1 110 -444 239 246 15 0 chr4 142906242 142906307 -59422040 + MER92C LTR ERV1 487 552 -2 278 313 25 37 chr4 142906334 142906497 -59421850 - L1ME3A LINE L1 -1095 5051 4891 1509 216 17 0 chr4 142906501 142906793 -59421554 + AluJo SINE Alu 3 299 -13 230 176 20 0 chr4 142907641 142907692 -59420655 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 559 291 86 33 chr4 142907714 142908075 -59420272 - L1ME3A LINE L1 -2188 3958 3579 2043 189 162 68 chr4 142908093 142908848 -59419499 + LTR1B LTR ERV1 1 826 0 429 263 62 36 chr4 142909165 142909359 -59418988 - L1ME3A LINE L1 -2953 3193 2995 433 149 0 0 chr4 142909575 142909649 -59418698 - Alu SINE Alu -1 309 236 243 203 51 0 chr4 142909888 142909967 -59418380 + (TA)n Simple_repeat Simple_repeat 1 83 0 25 31 0 0 chr4 142910715 142910747 -59417600 + AT_rich Low_complexity Low_complexity 1 32 0 938 306 91 26 chr4 142911736 142912155 -59416192 + L2 LINE L2 2864 3309 -4 186 143 0 0 chr4 142913477 142913512 -59414835 + (GA)n Simple_repeat Simple_repeat 2 36 0 403 314 25 0 chr4 142913636 142913754 -59414593 - L2 LINE L2 -1 3312 3192 218 200 0 0 chr4 142914411 142914461 -59413886 + T-rich Low_complexity Low_complexity 1 50 0 1311 267 97 50 chr4 142914463 142915089 -59413258 - L2 LINE L2 -898 2416 1761 229 254 0 45 chr4 142915377 142915444 -59412903 + MIR SINE MIR 77 140 -122 21 36 0 0 chr4 142916927 142916955 -59411392 + AT_rich Low_complexity Low_complexity 1 28 0 436 300 31 31 chr4 142918385 142918545 -59409802 + MER5B DNA MER1_type 13 172 -6 26 50 0 0 chr4 142918806 142918846 -59409501 + AT_rich Low_complexity Low_complexity 1 40 0 26 50 0 0 chr4 142919137 142919177 -59409170 + AT_rich Low_complexity Low_complexity 1 40 0 1711 195 42 13 chr4 142919315 142919694 -59408653 - MLT1B LTR MaLR 0 390 1 246 379 0 10 chr4 142920360 142920463 -59407884 + MER5A DNA MER1_type 3 104 -85 340 316 72 24 chr4 142920614 142920823 -59407524 - L3 LINE CR1 -252 1325 1107 28 29 0 0 chr4 142921573 142921608 -59406739 + AT_rich Low_complexity Low_complexity 1 35 0 220 347 74 0 chr4 142921840 142921961 -59406386 - L2 LINE L2 -584 2730 2601 206 57 57 0 chr4 142922447 142922482 -59405865 + GA-rich Low_complexity Low_complexity 3 39 0 22 0 0 0 chr4 142923042 142923064 -59405283 + AT_rich Low_complexity Low_complexity 1 22 0 231 206 68 55 chr4 142923253 142923326 -59405021 + MIR3 SINE MIR 126 199 -9 22 56 0 0 chr4 142923834 142923870 -59404477 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr4 142924072 142924103 -59404244 + AT_rich Low_complexity Low_complexity 1 31 0 354 296 34 67 chr4 142924980 142925247 -59403100 + L1ME4a LINE L1 5710 5967 -154 24 0 0 0 chr4 142925640 142925664 -59402683 + AT_rich Low_complexity Low_complexity 1 24 0 949 145 28 0 chr4 142925766 142925911 -59402436 - AluSg/x SINE Alu -18 294 146 423 0 0 0 chr4 142926574 142926621 -59401726 + (TG)n Simple_repeat Simple_repeat 2 48 0 1729 159 55 0 chr4 142926640 142926930 -59401417 + MER2 DNA MER2_type 26 331 -14 364 302 0 22 chr4 142926930 142926990 -59401357 + (TA)n Simple_repeat Simple_repeat 1 61 -75 1137 195 27 126 chr4 142926990 142927395 -59400952 - MLT1A1 LTR MaLR 0 365 1 364 302 0 22 chr4 142927395 142927473 -59400874 + (TA)n Simple_repeat Simple_repeat 61 136 0 1747 125 17 31 chr4 142927622 142927909 -59400438 + THE1A LTR MaLR 69 351 -4 596 26 13 0 chr4 142928584 142928662 -59399685 + (TCTA)n Simple_repeat Simple_repeat 1 79 0 226 309 0 21 chr4 142928663 142928757 -59399590 + L1MC4 LINE L1 6614 6705 -1337 4855 128 81 5 chr4 142928834 142929653 -59398694 + Tigger3(Golem) DNA MER2_type 2148 3028 -1 193 407 42 21 chr4 142929702 142929938 -59398409 - L2 LINE L2 -196 3076 2836 292 344 78 23 chr4 142931215 142931343 -59397004 - L2 LINE L2 0 3272 3138 23 92 0 0 chr4 142932684 142932749 -59395598 + AT_rich Low_complexity Low_complexity 1 65 0 226 164 16 16 chr4 142933018 142933079 -59395268 + CT-rich Low_complexity Low_complexity 3 63 0 494 298 116 51 chr4 142933116 142933408 -59394939 + MLT1F1 LTR MaLR 1 311 -284 557 267 18 18 chr4 142933476 142933641 -59394706 + MLT1F1 LTR MaLR 395 559 -8 998 259 53 22 chr4 142933888 142934247 -59394100 + LTR40c LTR ERVL 96 465 0 22 0 0 0 chr4 142934653 142934675 -59393672 + AT_rich Low_complexity Low_complexity 1 22 0 264 322 75 7 chr4 142935182 142935328 -59393019 - MIR3 SINE MIR -15 193 38 24 0 0 0 chr4 142935505 142935529 -59392818 + AT_rich Low_complexity Low_complexity 1 24 0 1281 271 51 73 chr4 142935612 142936342 -59392005 - L1ME3A LINE L1 -34 6070 5357 312 267 140 35 chr4 142936446 142936817 -59391530 - L1ME LINE L1 -4440 1640 1079 370 306 75 58 chr4 142936889 142937432 -59390915 - L1ME LINE L1 -4940 1130 560 29 0 0 0 chr4 142938022 142938051 -59390296 + AT_rich Low_complexity Low_complexity 1 29 0 2914 227 35 5 chr4 142938983 142939617 -59388730 + MER82 DNA MER2_type 1 653 0 24 53 0 0 chr4 142939731 142939769 -59388578 + AT_rich Low_complexity Low_complexity 1 38 0 2076 248 24 43 chr4 142939859 142940168 -59388179 - MER90 LTR ERV1 0 614 322 2254 181 36 2 chr4 142940168 142940610 -59387737 + MER65C LTR ERV1 1 457 -4 2076 248 24 43 chr4 142940610 142940926 -59387421 - MER90 LTR ERV1 -292 322 1 909 42 0 8 chr4 142941326 142941446 -59386901 - L1PA4 LINE L1 0 6155 6037 23 68 0 0 chr4 142941649 142941693 -59386654 + AT_rich Low_complexity Low_complexity 1 44 0 203 133 0 0 chr4 142941883 142941913 -59386434 + (CA)n Simple_repeat Simple_repeat 1 30 0 893 187 18 0 chr4 142942689 142942855 -59385492 + L1PBa LINE L1 33 201 -6662 8658 104 133 14 chr4 142942859 142944307 -59384040 + L1PBa LINE L1 639 2259 -4604 8001 265 19 54 chr4 142944412 142945683 -59382664 + L1PBa LINE L1 2564 3878 -2984 2173 108 10 3 chr4 142945683 142945978 -59382369 + AluSg SINE Alu 1 297 -13 8001 265 19 54 chr4 142945978 142947891 -59380456 + L1PBa LINE L1 3878 5637 -1225 209 145 16 48 chr4 142948009 142948071 -59380276 + (TTATA)n Simple_repeat Simple_repeat 5 64 0 * 385 196 28 34 chr4 142948031 142948210 -59380137 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 * 406 153 80 6 chr4 142948078 142948241 -59380106 + (TA)n Simple_repeat Simple_repeat 2 176 0 2236 105 45 17 chr4 142948259 142948612 -59379735 + L1PB1 LINE L1 5782 6144 -7 237 180 62 23 chr4 142949453 142949581 -59378766 + (TA)n Simple_repeat Simple_repeat 2 134 0 185 288 112 40 chr4 142950184 142950309 -59378038 + L2 LINE L2 2231 2364 -950 2070 123 7 3 chr4 142950340 142950649 -59377698 + AluSp SINE Alu 1 310 -3 456 267 54 65 chr4 142950891 142951168 -59377179 - HAL1b LINE L1 -636 712 439 26 0 0 0 chr4 142952653 142952679 -59375668 + AT_rich Low_complexity Low_complexity 1 26 0 235 276 17 0 chr4 142952692 142952750 -59375597 - MIR SINE MIR -155 107 49 21 36 0 0 chr4 142953446 142953474 -59374873 + AT_rich Low_complexity Low_complexity 1 28 0 474 188 31 0 chr4 142954473 142954569 -59373778 - FLAM_C SINE Alu 0 143 45 1222 205 16 4 chr4 142954882 142955140 -59373207 + L1MA9 LINE L1 6014 6274 -38 35 71 0 0 chr4 142956247 142956317 -59372030 + AT_rich Low_complexity Low_complexity 1 70 0 333 214 55 14 chr4 142958063 142958208 -59370139 + (TA)n Simple_repeat Simple_repeat 1 151 0 308 89 0 0 chr4 142959891 142959936 -59368411 - MADE1 DNA Mariner -1 79 35 23 78 0 0 chr4 142961130 142961181 -59367166 + AT_rich Low_complexity Low_complexity 1 51 0 561 244 83 54 chr4 142961303 142961635 -59366712 - MER52A LTR ERV1 -147 489 202 * 706 283 6 11 chr4 142961610 142961790 -59366557 - LTR28 LTR ERV1 -841 179 1 234 0 0 0 chr4 142962515 142962541 -59365806 + (TG)n Simple_repeat Simple_repeat 2 27 0 915 350 47 22 chr4 142962560 142962963 -59365384 - LTR16C LTR ERVL -14 477 65 1390 206 65 142 chr4 142964010 142964553 -59363794 - MER67D LTR ERV1 -1 513 13 286 364 65 16 chr4 142964602 142964786 -59363561 - ERVL LTR ERVL -1398 4366 4174 2373 75 0 3 chr4 142964876 142965171 -59363176 - AluSx SINE Alu -17 295 2 916 285 56 32 chr4 142965620 142966087 -59362260 + L1ME3A LINE L1 5692 6169 -1 386 232 47 12 chr4 142966762 142966968 -59361379 - L1M LINE L1 -776 5388 5173 707 202 319 0 chr4 142967206 142967419 -59360928 - MST-int LTR MaLR -529 1122 842 442 190 50 0 chr4 142967409 142967509 -59360838 - MSTB1-int LTR MaLR -1475 105 1 * 2208 185 12 14 chr4 142967513 142967935 -59360412 - MSTB1 LTR MaLR -4 428 8 25 0 0 0 chr4 142968146 142968171 -59360176 + AT_rich Low_complexity Low_complexity 1 25 0 927 195 5 45 chr4 142968424 142968645 -59359702 - AluJo SINE Alu 0 312 101 26 30 0 0 chr4 142968947 142968980 -59359367 + AT_rich Low_complexity Low_complexity 1 33 0 1418 167 0 0 chr4 142969016 142969243 -59359104 + AluSx SINE Alu 55 281 -31 198 0 0 0 chr4 142969246 142969268 -59359079 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 33 0 0 0 chr4 142969544 142969577 -59358770 + AT_rich Low_complexity Low_complexity 1 33 0 535 309 61 0 chr4 142969851 142970032 -59358315 - MER20B DNA MER1_type -329 454 263 216 0 0 0 chr4 142970201 142970225 -59358122 + (CA)n Simple_repeat Simple_repeat 1 24 0 223 255 277 0 chr4 142970264 142970358 -59357989 + L2 LINE L2 3194 3313 0 225 326 89 13 chr4 142971732 142971968 -59356379 - L1M4 LINE L1 -3021 3125 2872 473 344 67 29 chr4 142972069 142972654 -59355693 - L1M4 LINE L1 -3391 2755 2149 524 333 45 26 chr4 142973183 142973492 -59354855 - HAL1b LINE L1 -732 616 302 2753 165 23 6 chr4 142973543 142974016 -59354331 - Tigger3b DNA MER2_type -2 1229 749 3789 226 69 128 chr4 142974020 142975391 -59352956 + L1PB3 LINE L1 5 1456 -6109 932 209 65 0 chr4 142975391 142975592 -59352755 + AluJo SINE Alu 9 222 -90 3789 226 69 128 chr4 142975592 142977039 -59351308 + L1PB3 LINE L1 1456 3569 -3996 * 11837 208 25 9 chr4 142977031 142978770 -59349577 + L1PB3 LINE L1 3776 5486 -2087 2843 6 0 0 chr4 142978770 142979081 -59349266 + AluYa5 SINE Alu 1 311 0 11837 208 25 9 chr4 142979081 142981077 -59347270 + L1PB3 LINE L1 5486 7573 0 224 234 31 0 chr4 142981077 142981141 -59347206 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 1875 146 3 6 chr4 142981863 142982179 -59346168 + L1MC1 LINE L1 6013 6327 -6 9362 215 25 23 chr4 142982185 142984629 -59343718 + L1MEc LINE L1 2198 4617 -1598 4797 140 9 67 chr4 142984653 142985181 -59343166 - L1PA15 LINE L1 0 6165 5608 2478 170 12 2 chr4 142985181 142985605 -59342742 - MSTA LTR MaLR 0 428 1 4797 140 9 67 chr4 142985605 142985935 -59342412 - L1PA15 LINE L1 -557 5608 5368 1908 139 0 0 chr4 142985935 142986202 -59342145 - AluSg SINE Alu -43 267 1 4797 140 9 67 chr4 142986202 142986337 -59342010 - L1PA15 LINE L1 -797 5368 5227 * 5281 185 22 36 chr4 142986333 142988645 -59339702 + L1MA4 LINE L1 4014 6290 -10 3106 146 71 60 chr4 142988668 142989413 -59338934 - Tigger3b DNA MER2_type -478 753 1 197 164 0 36 chr4 142989415 142989470 -59338877 + (TATG)n Simple_repeat Simple_repeat 4 56 0 22 0 0 0 chr4 142990181 142990203 -59338144 + AT_rich Low_complexity Low_complexity 1 22 0 2090 119 0 7 chr4 142990203 142990214 -59338133 - AluSx SINE Alu -19 293 283 318 50 0 0 chr4 142990214 142990254 -59338093 + (TTAA)n Simple_repeat Simple_repeat 3 42 0 2090 119 0 7 chr4 142990254 142990535 -59337812 - AluSx SINE Alu -29 283 3 478 187 122 0 chr4 142991157 142991264 -59337083 + FLAM_C SINE Alu 1 120 -23 246 62 0 0 chr4 142991264 142991296 -59337051 + (TAA)n Simple_repeat Simple_repeat 2 33 0 530 311 41 27 chr4 142991337 142991703 -59336644 + L1PA12 LINE L1 7 377 -7204 2074 119 23 0 chr4 142991960 142992262 -59336085 - AluSc SINE Alu 0 309 1 12612 234 22 18 chr4 142993078 142996797 -59331550 + L1PA12 LINE L1 2319 6074 -1510 5593 115 2 32 chr4 142996817 142998437 -59329910 + L1PA15 LINE L1 4564 6156 -9 890 253 61 67 chr4 142998516 142998699 -59329648 + L1M4 LINE L1 4415 4598 -1548 240 35 0 0 chr4 142998699 142998728 -59329619 + (TG)n Simple_repeat Simple_repeat 2 30 0 890 253 61 67 chr4 142998728 142999153 -59329194 + L1M4 LINE L1 4598 5019 -1127 2453 202 147 18 chr4 142999198 142999873 -59328474 - L1MC4 LINE L1 -753 5811 5657 13306 57 1 3 chr4 143000013 143002387 -59325960 + L1PA5 LINE L1 3678 6047 -107 3614 230 66 67 chr4 143002383 143005153 -59323194 - L1MC4 LINE L1 -3671 2893 6 * 384 281 87 45 chr4 143005210 143005458 -59322889 - L1M4 LINE L1 -2981 3165 2929 1816 153 0 0 chr4 143005458 143005740 -59322607 - AluSx SINE Alu -30 282 1 384 281 87 45 chr4 143005740 143006063 -59322284 - L1M4 LINE L1 -3217 2929 2570 2067 219 16 60 chr4 143006069 143006643 -59321704 + L1MB7 LINE L1 2576 3117 -3029 207 0 0 0 chr4 143006643 143006666 -59321681 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2067 219 16 60 chr4 143006666 143006779 -59321568 + L1MB7 LINE L1 3117 3233 -2913 2263 199 26 32 chr4 143006808 143007336 -59321011 + L1MB7 LINE L1 5644 6168 -16 929 335 33 9 chr4 143007340 143007799 -59320548 + L1ME3A LINE L1 5679 6148 -22 35 0 0 0 chr4 143008167 143008202 -59320145 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 143008612 143008640 -59319707 + AT_rich Low_complexity Low_complexity 1 28 0 272 364 41 0 chr4 143009246 143009367 -59318980 + MLT1K LTR MaLR 147 272 -316 366 405 14 5 chr4 143009521 143009736 -59318611 - L2 LINE L2 -383 2931 2715 24 32 0 0 chr4 143009757 143009788 -59318559 + AT_rich Low_complexity Low_complexity 1 31 0 41 48 0 0 chr4 143010736 143010798 -59317549 + AT_rich Low_complexity Low_complexity 1 62 0 187 189 0 94 chr4 143011643 143011696 -59316651 + L3 LINE CR1 389 436 -1141 413 316 70 44 chr4 143012357 143012812 -59315535 + L1ME LINE L1 5256 5722 -399 204 229 31 42 chr4 143016435 143016531 -59311816 + (CGGG)n Simple_repeat Simple_repeat 2 96 0 309 356 72 10 chr4 143016765 143016959 -59311388 + L2 LINE L2 2689 2894 -420 247 338 83 15 chr4 143017190 143017323 -59311024 + MIR SINE MIR 91 232 -30 439 200 42 0 chr4 143018082 143018177 -59310170 - MER5A DNA MER1_type -77 112 14 2088 161 46 55 chr4 143018374 143018833 -59309514 + MER34B LTR ERV1 1 455 -110 1323 211 3 49 chr4 143018940 143019267 -59309080 - AluJb SINE Alu 0 312 1 183 42 0 0 chr4 143019518 143019542 -59308805 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 1736 114 0 114 chr4 143020302 143020660 -59307687 + L1MA4 LINE L1 5655 5971 -329 205 192 0 19 chr4 143021169 143021221 -59307126 + T-rich Low_complexity Low_complexity 5 55 0 925 323 36 83 chr4 143021360 143021911 -59306436 + HERVL40 LTR ERVL 984 1508 -4022 516 286 109 10 chr4 143021974 143022166 -59306181 + HERVL40 LTR ERVL 3270 3480 -2050 1068 296 54 24 chr4 143022170 143022542 -59305805 + HERVL40 LTR ERVL 3584 3966 -1564 44108 38 1 2 chr4 143022563 143028716 -59299631 + L1PA3 LINE L1 5 6152 -3 23 0 0 0 chr4 143028716 143028739 -59299608 + AT_rich Low_complexity Low_complexity 1 23 0 328 265 172 20 chr4 143028754 143028905 -59299442 + HERVL40 LTR ERVL 1787 1960 -1077 271 275 11 11 chr4 143028878 143028969 -59299378 + HERVL40 LTR ERVL 4125 4215 -1315 * 898 249 61 59 chr4 143029914 143030270 -59298077 + HERVL40 LTR ERVL 2780 5530 0 1588 239 51 27 chr4 143030273 143030721 -59297626 + LTR40b LTR ERVL 4 462 0 21 0 0 0 chr4 143032164 143032185 -59296162 + AT_rich Low_complexity Low_complexity 1 21 0 619 273 130 14 chr4 143033560 143033776 -59294571 - MIR SINE MIR -1 261 21 489 34 0 0 chr4 143033848 143033907 -59294440 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 1340 227 14 14 chr4 143033966 143034244 -59294103 - AluJo SINE Alu -34 278 1 232 363 204 6 chr4 143035465 143035823 -59292524 + L3 LINE CR1 1137 1565 -12 181 328 61 69 chr4 143036540 143036671 -59291676 - L2 LINE L2 -40 3273 3144 351 281 16 33 chr4 143037687 143037808 -59290539 + MIR SINE MIR 48 166 -96 195 175 0 0 chr4 143037823 143037880 -59290467 + (TA)n Simple_repeat Simple_repeat 1 57 0 243 0 0 0 chr4 143037911 143037938 -59290409 + (CA)n Simple_repeat Simple_repeat 2 28 0 285 227 32 0 chr4 143037987 143038062 -59290285 - MIR SINE MIR -66 142 72 202 203 34 17 chr4 143038062 143038121 -59290226 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 218 352 49 49 chr4 143038839 143039103 -59289244 + L2 LINE L2 1758 2021 -1293 240 318 109 0 chr4 143039384 143039494 -59288853 - MLT1I LTR MaLR -275 134 13 254 321 106 23 chr4 143039651 143040318 -59288029 + L1MC4 LINE L1 7099 7787 -255 5331 134 8 19 chr4 143040318 143042197 -59286150 + L1PA16 LINE L1 4280 6164 -2 254 321 106 23 chr4 143042197 143042335 -59286012 + L1MC4 LINE L1 7787 7912 -130 2754 10 0 0 chr4 143042759 143043064 -59285283 + AluYa5 SINE Alu 1 305 -6 23 33 0 0 chr4 143043151 143043181 -59285166 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 143043277 143043298 -59285049 + AT_rich Low_complexity Low_complexity 1 21 0 8388 213 8 7 chr4 143043704 143044136 -59284211 - L1 LINE L1 -1009 5137 4707 1591 85 33 0 chr4 143044136 143044227 -59284120 - AluY SINE Alu -93 218 131 186 43 0 0 chr4 143044227 143044250 -59284097 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1591 85 33 0 chr4 143044250 143044369 -59283978 - AluY SINE Alu -180 131 1 8388 213 8 7 chr4 143044369 143045823 -59282524 - L1 LINE L1 -1439 4707 3248 23 0 0 0 chr4 143047932 143047955 -59280392 + AT_rich Low_complexity Low_complexity 1 23 0 1680 101 0 21 chr4 143048283 143048520 -59279827 - AluSq SINE Alu -14 299 68 21 71 0 0 chr4 143048629 143048671 -59279676 + AT_rich Low_complexity Low_complexity 1 42 0 321 284 37 12 chr4 143048719 143048800 -59279547 - LTR50 LTR ERVL -338 457 375 270 293 120 0 chr4 143048871 143048946 -59279401 - LTR50 LTR ERVL -593 202 119 24 0 0 0 chr4 143049278 143049302 -59279045 + AT_rich Low_complexity Low_complexity 1 24 0 31 44 0 0 chr4 143049722 143049767 -59278580 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr4 143050158 143050188 -59278159 + AT_rich Low_complexity Low_complexity 1 30 0 317 270 128 20 chr4 143050251 143050399 -59277948 + HAL1b LINE L1 746 909 -439 831 263 71 35 chr4 143050586 143050925 -59277422 - L1MC4 LINE L1 -427 7615 7265 708 240 45 61 chr4 143050925 143051238 -59277109 + L1MC4 LINE L1 7735 8042 0 2162 119 0 0 chr4 143051342 143051645 -59276702 - AluY SINE Alu -8 303 1 203 286 0 0 chr4 143051692 143051734 -59276613 + MIR SINE MIR 205 246 -16 5858 147 23 7 chr4 143052145 143052497 -59275850 - L1PB1 LINE L1 0 6151 5806 340 54 18 18 chr4 143052497 143052553 -59275794 + (TA)n Simple_repeat Simple_repeat 2 57 0 5858 147 23 7 chr4 143052553 143053775 -59274572 - L1PB1 LINE L1 -345 5806 4553 2287 229 35 7 chr4 143053777 143054379 -59273968 + L1PB1 LINE L1 3934 4552 -1594 925 125 0 15 chr4 143054741 143054906 -59273441 + AluSg/x SINE Alu 157 310 0 343 318 71 8 chr4 143055590 143055716 -59272631 - MIR SINE MIR -126 136 3 469 330 51 23 chr4 143055875 143056090 -59272257 + MIR SINE MIR 6 226 -36 1099 257 90 57 chr4 143056228 143057288 -59271059 + L1MC/D LINE L1 498 1579 -4501 1424 254 134 21 chr4 143057376 143058554 -59269793 + L1MC/D LINE L1 1686 2998 -3082 860 226 55 5 chr4 143058562 143058761 -59269586 - MER58A DNA MER1_type -9 215 7 730 217 115 5 chr4 143058815 143059032 -59269315 + MER52A LTR ERV1 1 241 -1514 * 1869 195 5 52 chr4 143059018 143059460 -59268887 + MER52A LTR ERV1 373 793 -962 226 270 79 0 chr4 143060176 143060239 -59268108 + L2 LINE L2 3205 3272 0 257 350 8 25 chr4 143060337 143060457 -59267890 + L2 LINE L2 3195 3312 -1 22 0 0 0 chr4 143061244 143061266 -59267081 + AT_rich Low_complexity Low_complexity 1 22 0 1438 96 23 9 chr4 143061266 143061486 -59266861 - L1PA3 LINE L1 -3 6152 5930 30 27 0 0 chr4 143061695 143061732 -59266615 + AT_rich Low_complexity Low_complexity 1 37 0 234 284 49 0 chr4 143062108 143062189 -59266158 - MLT1H1 LTR MaLR -32 523 439 234 240 40 0 chr4 143062331 143062381 -59265966 - MLT1G LTR MaLR -302 288 237 2902 218 58 42 chr4 143062418 143063275 -59265072 + L1MD2 LINE L1 5487 6358 -1 21 36 0 0 chr4 143063303 143063331 -59265016 + AT_rich Low_complexity Low_complexity 1 28 0 485 276 152 40 chr4 143063337 143064039 -59264308 + L1MC/D LINE L1 4001 4781 -1299 333 292 67 20 chr4 143064186 143064517 -59263830 + L1MC/D LINE L1 5061 5407 -768 3758 155 66 47 chr4 143064540 143065191 -59263156 - L1MA4 LINE L1 0 7719 7049 243 0 0 0 chr4 143065191 143065218 -59263129 + (TA)n Simple_repeat Simple_repeat 2 28 0 3758 155 66 47 chr4 143065218 143065353 -59262994 - L1MA4 LINE L1 -670 7049 6918 3153 203 62 8 chr4 143065423 143066191 -59262156 - L1MA4 LINE L1 -1828 5737 4928 211 153 59 24 chr4 143066200 143066285 -59262062 + (TTATA)n Simple_repeat Simple_repeat 4 91 0 * 215 171 57 0 chr4 143066237 143066307 -59262040 + (TATAA)n Simple_repeat Simple_repeat 1 74 0 224 136 34 0 chr4 143066309 143066368 -59261979 + (TTATA)n Simple_repeat Simple_repeat 1 61 0 4678 246 36 45 chr4 143066369 143068322 -59260025 - L1MA4 LINE L1 -2632 4933 2964 2318 156 8 3 chr4 143068322 143068707 -59259640 - L1PA16 LINE L1 -9 6157 5771 4678 246 36 45 chr4 143068707 143068825 -59259522 - L1MA4 LINE L1 -4601 2964 2846 204 40 0 0 chr4 143068825 143068850 -59259497 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4678 246 36 45 chr4 143068850 143069761 -59258586 - L1MA4 LINE L1 -4719 2846 2266 512 332 33 91 chr4 143070124 143070412 -59257935 - L1MA4 LINE L1 -5772 1724 1480 1630 172 24 14 chr4 143070412 143070702 -59257645 - AluSx SINE Alu -19 293 1 512 332 33 91 chr4 143070702 143070952 -59257395 - L1MA4 LINE L1 -6016 1480 1217 26 50 0 0 chr4 143072081 143072121 -59256226 + AT_rich Low_complexity Low_complexity 1 40 0 297 0 0 0 chr4 143072485 143072518 -59255829 + (TG)n Simple_repeat Simple_repeat 2 34 0 408 55 0 0 chr4 143073209 143073264 -59255083 + (TG)n Simple_repeat Simple_repeat 2 56 0 280 240 60 30 chr4 143073605 143073705 -59254642 - MIR SINE MIR -73 189 87 2251 162 3 3 chr4 143073819 143074183 -59254164 - THE1B LTR MaLR 0 364 1 9059 145 33 24 chr4 143074183 143075749 -59252598 - THE1B-int LTR MaLR 0 1580 1 2285 141 14 6 chr4 143075749 143076110 -59252237 - THE1B LTR MaLR 0 364 1 25 31 0 0 chr4 143076918 143076950 -59251397 + AT_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr4 143080100 143080149 -59248198 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr4 143080237 143080259 -59248088 + AT_rich Low_complexity Low_complexity 1 22 0 489 237 185 5 chr4 143080617 143080828 -59247519 + L1MD3 LINE L1 7745 7993 -2 1092 207 23 0 chr4 143080984 143081201 -59247146 + AluJo SINE Alu 1 222 -90 2535 181 103 5 chr4 143081447 143082010 -59246337 - L1MB3 LINE L1 -7 6176 5559 336 308 161 49 chr4 143082091 143082686 -59245661 - L2 LINE L2 -337 2977 2316 192 77 0 0 chr4 143082817 143082843 -59245504 + (T)n Simple_repeat Simple_repeat 1 26 0 231 188 0 0 chr4 143083778 143083826 -59244521 + GA-rich Low_complexity Low_complexity 3 50 0 338 258 42 66 chr4 143083861 143084028 -59244319 - L1ME4a LINE L1 -2 6119 5957 553 305 42 17 chr4 143084564 143084800 -59243547 + MIR SINE MIR 9 250 -12 2088 122 0 0 chr4 143085047 143085350 -59242997 - AluSx SINE Alu -9 303 1 1044 90 0 0 chr4 143085354 143085487 -59242860 - AluSq/x SINE Alu -179 133 1 12628 153 64 16 chr4 143085487 143085553 -59242794 + Tigger1 DNA MER2_type 45 106 -2312 2313 94 0 3 chr4 143085553 143085852 -59242495 - AluSg SINE Alu -12 298 1 12628 153 64 16 chr4 143085852 143088050 -59240297 + Tigger1 DNA MER2_type 106 2417 -1 186 374 46 30 chr4 143088202 143088333 -59240014 + MIR SINE MIR 19 151 -57 462 350 45 0 chr4 143088859 143089059 -59239288 - MIR SINE MIR -2 260 52 15538 159 23 12 chr4 143090601 143093279 -59235068 - Tigger2 DNA MER2_type 0 2718 10 188 338 125 0 chr4 143095776 143095856 -59232491 + L2 LINE L2 3200 3289 -24 21 57 0 0 chr4 143096410 143096445 -59231902 + AT_rich Low_complexity Low_complexity 1 35 0 353 22 22 0 chr4 143096987 143097033 -59231314 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 30 59 0 0 chr4 143097141 143097192 -59231155 + AT_rich Low_complexity Low_complexity 1 51 0 240 296 101 50 chr4 143147829 143147988 -59180359 - MIR SINE MIR -29 233 67 238 296 58 93 chr4 143148922 143149022 -59179325 - MIR SINE MIR -2 260 167 1709 169 10 13 chr4 143149022 143149330 -59179017 - AluJb SINE Alu 0 312 6 238 296 58 93 chr4 143149330 143149401 -59178946 - MIR SINE MIR -95 167 95 186 311 49 49 chr4 143149650 143149772 -59178575 - MIR SINE MIR -107 155 34 2799 195 60 25 chr4 143150607 143151243 -59177104 + L1MD1 LINE L1 5532 6189 -53 1013 209 50 28 chr4 143151234 143151517 -59176830 - L1MA4A LINE L1 -1 6302 6014 * 12180 193 41 26 chr4 143151647 143152220 -59176127 - L1MEc LINE L1 -235 6068 5505 2271 119 0 0 chr4 143152220 143152530 -59175817 - AluSx SINE Alu -2 310 1 12180 193 41 26 chr4 143152530 143154375 -59173972 - L1MEc LINE L1 -798 5505 3598 7472 33 0 0 chr4 143154375 143155602 -59172745 - L1PA4 LINE L1 -1 6154 4930 12180 193 41 26 chr4 143155602 143156971 -59171376 - L1MEc LINE L1 -2705 3598 2251 1984 296 98 3 chr4 143157297 143157970 -59170377 - L1M2b LINE L1 -6472 737 1 351 118 15 0 chr4 143157993 143158061 -59170286 + L1MD1 LINE L1 6173 6241 -1 262 324 70 42 chr4 143158207 143158349 -59169998 - MLT1K LTR MaLR -367 221 76 201 108 0 0 chr4 143158582 143158619 -59169728 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 196 383 106 30 chr4 143158983 143159388 -59168959 - L2 LINE L2 -481 2833 2398 275 236 0 0 chr4 143159769 143159824 -59168523 - L2 LINE L2 -3 3310 3256 387 141 0 94 chr4 143160863 143160948 -59167399 + MSTD LTR MaLR 1 77 -319 651 208 65 0 chr4 143160971 143161125 -59167222 + MSTD LTR MaLR 233 396 0 774 177 30 89 chr4 143161127 143161155 -59167192 + MSTD-int LTR MaLR 2 30 -1705 2701 110 91 2 chr4 143161155 143161582 -59166765 - MER4C LTR ERV1 0 465 1 774 177 30 89 chr4 143161582 143161756 -59166591 + MSTD-int LTR MaLR 30 192 -1543 189 107 0 0 chr4 143161791 143161819 -59166528 + (TTA)n Simple_repeat Simple_repeat 3 30 0 341 344 79 53 chr4 143162280 143162635 -59165712 - ERVL LTR ERVL -3507 2257 1894 571 341 117 6 chr4 143162817 143162966 -59165381 - L2 LINE L2 -282 3031 2900 216 0 0 0 chr4 143162966 143162990 -59165357 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 571 341 117 6 chr4 143162990 143163224 -59165123 - L2 LINE L2 -413 2900 2608 1185 171 116 55 chr4 143163743 143164036 -59164311 + MER7A DNA MER2_type 1 309 -37 2904 44 0 0 chr4 143164037 143164398 -59163949 - L1PA5 LINE L1 0 6154 5794 1863 259 20 46 chr4 143164515 143165128 -59163219 + L1ME2 LINE L1 5554 6150 -14 897 170 90 5 chr4 143165284 143165484 -59162863 + MER33 DNA MER1_type 5 221 -103 614 162 34 0 chr4 143165585 143165702 -59162645 - L1PB4 LINE L1 -2 6856 6736 210 158 31 79 chr4 143165704 143165831 -59162516 + (TATAA)n Simple_repeat Simple_repeat 2 122 0 10484 207 51 9 chr4 143165855 143169231 -59159116 - L1PB4 LINE L1 -122 6736 3225 706 299 77 19 chr4 143169227 143169551 -59158796 - L1PB4 LINE L1 -5171 1678 1336 * 2325 82 7 3 chr4 143169562 143169868 -59158479 - AluSc SINE Alu -2 307 1 764 267 5 0 chr4 143169868 143170063 -59158284 - L1PA15-16 LINE L1 -5306 897 702 380 321 34 29 chr4 143170079 143170288 -59158059 - L1PA15-16 LINE L1 -5642 562 353 225 365 25 25 chr4 143170404 143170678 -59157669 - L1PA15-16 LINE L1 -5844 360 87 289 348 113 52 chr4 143170897 143171392 -59156955 - L1PB4 LINE L1 -6315 534 10 343 275 9 9 chr4 143171631 143171740 -59156607 + MER103 DNA DNA 13 121 -45 2389 84 0 0 chr4 143172406 143172717 -59155630 + AluY SINE Alu 1 311 0 313 87 0 0 chr4 143174894 143174940 -59153407 - MADE1 DNA Mariner 0 80 35 2311 97 0 0 chr4 143175888 143176197 -59152150 - AluY SINE Alu -2 309 1 21 0 0 0 chr4 143177527 143177548 -59150799 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr4 143178083 143178113 -59150234 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 143178627 143178649 -59149698 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 143179902 143179924 -59148423 + AT_rich Low_complexity Low_complexity 1 22 0 202 232 18 18 chr4 143180159 143180215 -59148132 + (TG)n Simple_repeat Simple_repeat 2 57 0 245 217 0 0 chr4 143180583 143180629 -59147718 + Tigger3(Golem) DNA MER2_type 2979 3024 -5 9369 140 41 20 chr4 143182060 143184363 -59143984 + L1PA10 LINE L1 3843 6167 -1 240 152 0 0 chr4 143184563 143184609 -59143738 + L1ME3 LINE L1 1413 1458 -4965 451 297 132 41 chr4 143184805 143184822 -59143525 + L1ME3 LINE L1 1863 1877 -5064 1826 161 3 23 chr4 143184822 143185126 -59143221 + AluJo SINE Alu 1 298 -14 451 297 132 41 chr4 143185126 143185725 -59142622 + L1ME3 LINE L1 1877 2482 -4459 328 271 135 26 chr4 143185856 143186048 -59142299 + L1ME3 LINE L1 2651 2863 -4078 487 248 34 84 chr4 143186110 143186433 -59141914 + L1ME3 LINE L1 2926 3232 -3709 688 211 6 44 chr4 143186453 143186633 -59141714 - AluJo SINE Alu -22 290 118 785 229 17 6 chr4 143186792 143186971 -59141376 + MER58 DNA MER1_type 3 183 -2237 265 309 89 16 chr4 143186971 143187162 -59141185 + L1ME3 LINE L1 5506 5710 -1231 1905 104 7 0 chr4 143187214 143187484 -59140863 + AluSg SINE Alu 38 309 -1 431 280 84 61 chr4 143187489 143187520 -59140827 + L1ME3 LINE L1 5807 5836 -1105 547 300 22 45 chr4 143187520 143187743 -59140604 - MER20 DNA MER1_type -1 218 1 431 280 84 61 chr4 143187743 143188007 -59140340 + L1ME3 LINE L1 5836 6109 -832 1137 252 87 56 chr4 143188046 143188565 -59139782 + L1ME3 LINE L1 6144 6678 -279 290 313 10 10 chr4 143188585 143188684 -59139663 + LTR28 LTR ERV1 81 179 -841 540 240 60 66 chr4 143188720 143189013 -59139334 + MER52A LTR ERV1 545 1297 -44 24 32 0 0 chr4 143189111 143189142 -59139205 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr4 143189465 143189500 -59138847 + AT_rich Low_complexity Low_complexity 1 35 0 321 310 67 69 chr4 143189666 143190217 -59138130 - HAL1 LINE L1 -824 1683 1134 1984 151 0 3 chr4 143190863 143191167 -59137180 + AluSx SINE Alu 1 303 -9 1102 97 11 0 chr4 143191517 143191692 -59136655 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 456 174 0 26 chr4 143191703 143191818 -59136529 + CT-rich Low_complexity Low_complexity 3 114 0 1409 312 40 18 chr4 143191885 143192510 -59135837 + HsTC2c DNA Tc2 88 726 -3 208 325 129 25 chr4 143193227 143193390 -59134957 + MIR SINE MIR 28 207 -55 293 343 133 0 chr4 143193482 143193648 -59134699 - L2 LINE L2 -432 2882 2695 934 261 60 30 chr4 143194902 143195370 -59132977 - L1MEc LINE L1 -1515 4700 4219 1378 268 140 26 chr4 143195530 143196059 -59132288 + MLT1E LTR MaLR 1 589 -4 362 277 15 0 chr4 143196118 143196248 -59132099 - L1MEc LINE L1 -2535 3680 3549 1721 269 93 39 chr4 143196268 143197679 -59130668 - L1MEc LINE L1 -2847 3368 1919 424 275 40 52 chr4 143197785 143197940 -59130407 - L1MEc LINE L1 -5096 1300 1145 1168 232 83 43 chr4 143197940 143198315 -59130032 + MLT1B LTR MaLR 1 390 0 424 275 40 52 chr4 143198315 143198483 -59129864 - L1MEc LINE L1 -5251 1145 981 772 262 30 23 chr4 143198503 143198990 -59129357 + MLT2F LTR ERVL 1 604 -59 542 339 87 31 chr4 143199071 143199902 -59128445 - L1MEc LINE L1 -5462 934 58 21 36 0 0 chr4 143201681 143201709 -59126638 + AT_rich Low_complexity Low_complexity 1 28 0 200 114 0 29 chr4 143201782 143201817 -59126530 + (TAGA)n Simple_repeat Simple_repeat 3 36 0 240 354 95 0 chr4 143202098 143202245 -59126102 + MIR SINE MIR 2 162 -100 2196 143 8 16 chr4 143202246 143202623 -59125724 - THE1C LTR MaLR -1 374 1 9095 149 36 28 chr4 143202623 143204137 -59124210 - THE1C-int LTR MaLR 0 1580 50 1958 150 0 0 chr4 143204137 143204424 -59123923 - AluSx SINE Alu -25 287 1 9095 149 36 28 chr4 143204424 143204472 -59123875 - THE1C-int LTR MaLR -1530 50 4 2119 142 21 19 chr4 143204475 143204849 -59123498 - THE1C LTR MaLR 0 375 1 691 260 7 7 chr4 143204937 143205091 -59123256 + MER5A DNA MER1_type 36 189 0 453 154 27 9 chr4 143205460 143205570 -59122777 + CT-rich Low_complexity Low_complexity 2 113 0 770 295 60 0 chr4 143206252 143206469 -59121878 - MIR SINE MIR -28 234 5 246 278 7 46 chr4 143206928 143207079 -59121268 + T-rich Low_complexity Low_complexity 2 146 0 396 0 0 0 chr4 143207176 143207220 -59121127 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 1454 215 33 36 chr4 143208151 143208514 -59119833 + MLT1A1 LTR MaLR 4 365 0 195 129 0 0 chr4 143208972 143209003 -59119344 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 6643 65 13 0 chr4 143209291 143210265 -59118082 - L1PA7 LINE L1 0 6154 5165 207 0 0 0 chr4 143211485 143211508 -59116839 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1886 146 0 7 chr4 143212308 143212595 -59115752 + AluSx SINE Alu 1 285 -27 29 60 0 0 chr4 143212596 143212646 -59115701 + AT_rich Low_complexity Low_complexity 1 50 0 1393 210 52 9 chr4 143212740 143213064 -59115283 + MER58B DNA MER1_type 4 341 0 271 332 98 16 chr4 143213360 143213553 -59114794 - MIR SINE MIR -24 238 30 292 297 20 10 chr4 143215558 143215659 -59112688 - L2 LINE L2 -1903 1411 1310 22 0 0 0 chr4 143215946 143215968 -59112379 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr4 143216249 143216284 -59112063 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 143216471 143216493 -59111854 + AT_rich Low_complexity Low_complexity 1 22 0 378 357 28 9 chr4 143216609 143216822 -59111525 + LTR16C LTR ERVL 275 491 0 239 45 0 106 chr4 143217039 143217105 -59111242 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 267 173 0 0 chr4 143217724 143217776 -59110571 + (CATATA)n Simple_repeat Simple_repeat 1 52 0 1401 213 92 44 chr4 143218106 143218548 -59109799 - MLT1C LTR MaLR 0 467 1 959 277 65 92 chr4 143218548 143219087 -59109260 - MLT1F1 LTR MaLR -18 549 1 31 0 0 0 chr4 143219372 143219403 -59108944 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 143219726 143219749 -59108598 + AT_rich Low_complexity Low_complexity 1 23 0 1192 272 73 29 chr4 143220144 143220703 -59107644 + L1ME LINE L1 4650 5233 -913 24596 89 7 5 chr4 143220713 143226847 -59101500 + L1PA6 LINE L1 11 6149 -5 418 216 154 19 chr4 143226897 143227059 -59101288 + L1ME LINE L1 5304 5487 -677 2370 323 81 47 chr4 143227185 143228762 -59099585 - L2 LINE L2 -169 3144 1511 243 289 116 25 chr4 143228773 143228894 -59099453 - L2 LINE L2 0 3313 3182 21 57 0 0 chr4 143228902 143228937 -59099410 + AT_rich Low_complexity Low_complexity 1 35 0 361 281 60 48 chr4 143229515 143229682 -59098665 - MER69A DNA AcHobo 0 177 9 679 232 16 11 chr4 143229785 143229970 -59098377 + L1MA9 LINE L1 6127 6312 0 23 33 0 0 chr4 143230141 143230171 -59098176 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 143230365 143230386 -59097961 + AT_rich Low_complexity Low_complexity 1 21 0 214 265 0 0 chr4 143230707 143230756 -59097591 + (TG)n Simple_repeat Simple_repeat 1 49 0 1037 319 51 16 chr4 143233011 143233463 -59094884 + L2 LINE L2 1809 2276 -1038 326 254 231 30 chr4 143233567 143233736 -59094611 + L2 LINE L2 3111 3313 0 402 21 0 0 chr4 143234429 143234476 -59093871 + (TG)n Simple_repeat Simple_repeat 1 47 0 653 309 104 51 chr4 143234564 143234959 -59093388 + LTR16C LTR ERVL 9 424 -67 788 236 11 0 chr4 143234962 143235140 -59093207 - MLT1D LTR MaLR -3 502 323 761 267 5 25 chr4 143235142 143235344 -59093003 - MLT1D LTR MaLR -307 198 1 28 61 0 0 chr4 143235752 143235801 -59092546 + AT_rich Low_complexity Low_complexity 1 49 0 194 312 40 70 chr4 143235985 143236184 -59092163 - L2 LINE L2 -310 3003 2811 216 352 164 26 chr4 143236477 143236824 -59091523 - L2 LINE L2 -899 2415 2021 183 275 38 12 chr4 143237347 143237427 -59090920 - L2 LINE L2 -1040 2274 2193 * 1153 304 76 3 chr4 143237411 143237847 -59090500 - L2 LINE L2 -305 3008 2527 1300 281 36 49 chr4 143237848 143238342 -59090005 - L2 LINE L2 -1966 1348 861 1358 226 26 29 chr4 143239064 143239409 -59088938 + MLT1A1 LTR MaLR 11 354 -11 2277 118 30 28 chr4 143239994 143240357 -59087990 - THE1B LTR MaLR 0 364 1 370 314 93 16 chr4 143242580 143242838 -59085509 + L1ME4a LINE L1 5617 5894 -227 3394 225 61 2 chr4 143243205 143244076 -59084271 + L1MB7 LINE L1 4335 5256 -890 1655 224 33 3 chr4 143244077 143244469 -59083878 + L1MB7 LINE L1 5565 5968 -216 8359 206 42 7 chr4 143244850 143247850 -59080497 + L1PA16 LINE L1 3055 6157 -9 21 0 0 0 chr4 143248299 143248320 -59080027 + AT_rich Low_complexity Low_complexity 1 21 0 2635 201 17 14 chr4 143248669 143249187 -59079160 + Tigger1 DNA MER2_type 15 534 -1884 259 225 113 0 chr4 143249187 143249258 -59079089 - L1 LINE L1 -1458 4752 4674 5385 116 23 29 chr4 143249258 143250710 -59077637 + L1PA15 LINE L1 4727 6165 0 1742 286 75 33 chr4 143250726 143251165 -59077182 - L1 LINE L1 -4327 1884 1465 243 0 0 0 chr4 143251165 143251192 -59077155 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 2054 110 3 3 chr4 143251192 143251474 -59076873 - AluSg SINE Alu -26 284 3 1742 286 75 33 chr4 143251474 143252353 -59075994 - L1 LINE L1 -4745 1466 518 731 313 21 42 chr4 143252685 143252969 -59075378 - L1 LINE L1 -5719 422 145 290 190 0 17 chr4 143253088 143253146 -59075201 - L1 LINE L1 -6084 57 1 21 57 0 0 chr4 143254856 143254891 -59073456 + AT_rich Low_complexity Low_complexity 1 35 0 1020 239 62 59 chr4 143254976 143255365 -59072982 + MLT1B LTR MaLR 1 390 0 26 82 0 0 chr4 143255467 143255528 -59072819 + AT_rich Low_complexity Low_complexity 1 61 0 781 262 102 42 chr4 143255730 143256062 -59072285 - MLT1C LTR MaLR 0 467 116 61 45 0 0 chr4 143258115 143258204 -59070143 + AT_rich Low_complexity Low_complexity 1 89 0 411 148 74 49 chr4 143259276 143259398 -59068949 + LTR19A LTR ERV1 345 469 -17 1634 205 118 38 chr4 143259761 143260209 -59068138 + MLT1D LTR MaLR 17 500 -5 234 242 17 8 chr4 143260210 143260330 -59068017 + (TA)n Simple_repeat Simple_repeat 1 121 0 3799 155 123 9 chr4 143260364 143261106 -59067241 - LTR1B LTR ERV1 0 826 1 495 220 25 7 chr4 143261155 143261439 -59066908 + (TA)n Simple_repeat Simple_repeat 1 289 0 246 200 0 0 chr4 143261439 143261489 -59066858 + L1MCa LINE L1 2015 2064 -4362 209 196 18 0 chr4 143261489 143261545 -59066802 + (TA)n Simple_repeat Simple_repeat 1 57 0 275 142 28 38 chr4 143261595 143261701 -59066646 + (TA)n Simple_repeat Simple_repeat 2 106 0 236 247 0 14 chr4 143261707 143261780 -59066567 - L1MC4 LINE L1 -1347 6695 6624 * 256 236 0 14 chr4 143261716 143261788 -59066559 + L1MC4 LINE L1 6615 6685 -1357 30 0 0 0 chr4 143262299 143262329 -59066018 + AT_rich Low_complexity Low_complexity 1 30 0 554 344 65 21 chr4 143262625 143262916 -59065431 + L2 LINE L2 2960 3263 -50 1433 219 117 145 chr4 143263364 143263815 -59064532 - LTR1B LTR ERV1 0 1020 558 2049 143 0 7 chr4 143263815 143264116 -59064231 - AluSx SINE Alu -11 301 3 1433 219 117 145 chr4 143264116 143264627 -59063720 - LTR1B LTR ERV1 -462 558 1 312 351 73 6 chr4 143265555 143265720 -59062627 + MIR3 SINE MIR 18 193 -15 1820 147 35 0 chr4 143266162 143266448 -59061899 + AluSx SINE Alu 1 296 -16 186 103 0 0 chr4 143266603 143266632 -59061715 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr4 143267019 143267040 -59061307 + AT_rich Low_complexity Low_complexity 1 21 0 2086 241 32 37 chr4 143268543 143269170 -59059177 + MLT1E2 LTR MaLR 1 624 -2 337 327 0 0 chr4 143269391 143269492 -59058855 + MIR SINE MIR 162 262 0 420 331 67 47 chr4 143270065 143270406 -59057941 - MLT1K LTR MaLR -23 565 218 465 329 84 36 chr4 143272554 143272803 -59055544 + MIR SINE MIR 2 262 0 22 35 0 0 chr4 143273844 143273873 -59054474 + AT_rich Low_complexity Low_complexity 1 29 0 5975 203 8 5 chr4 143274182 143275442 -59052905 - L1 LINE L1 -1133 5013 3741 5155 156 29 15 chr4 143275445 143276394 -59051953 + L1PA16 LINE L1 5067 6034 -132 2228 82 3 0 chr4 143276394 143276714 -59051633 + AluY SINE Alu 1 321 0 5155 156 29 15 chr4 143276714 143276845 -59051502 + L1PA16 LINE L1 6034 6162 -4 181 370 33 22 chr4 143277554 143277646 -59050701 - MIR3 SINE MIR -11 197 105 21 36 0 0 chr4 143278246 143278274 -59050073 + AT_rich Low_complexity Low_complexity 1 28 0 241 390 134 12 chr4 143279159 143279561 -59048786 - L2 LINE L2 -27 3286 2836 244 211 0 0 chr4 143279875 143279927 -59048420 - L1MC4 LINE L1 -1339 6703 6652 34 0 0 0 chr4 143280006 143280040 -59048307 + AT_rich Low_complexity Low_complexity 1 34 0 265 339 104 16 chr4 143281063 143281246 -59047101 - L2 LINE L2 -670 2644 2446 307 298 20 80 chr4 143281952 143282003 -59046344 + MIR SINE MIR 2 54 -208 1830 141 5 61 chr4 143282003 143282379 -59045968 - THE1A LTR MaLR 0 355 1 307 298 20 80 chr4 143282379 143282478 -59045869 + MIR SINE MIR 54 143 -119 279 322 59 25 chr4 143282557 143282675 -59045672 + L2 LINE L2 3188 3309 -4 26 30 0 0 chr4 143282956 143282989 -59045358 + AT_rich Low_complexity Low_complexity 1 33 0 2099 163 78 8 chr4 143283151 143283551 -59044796 + MSTA LTR MaLR 1 428 0 549 345 36 18 chr4 143284797 143285020 -59043327 - MIR SINE MIR -31 231 5 1913 150 72 3 chr4 143285573 143285852 -59042495 + MER47A DNA MER2_type 1 259 -2064 261 0 0 0 chr4 143285852 143285881 -59042466 + (TA)n Simple_repeat Simple_repeat 1 29 0 2429 61 0 16 chr4 143285881 143286192 -59042155 - AluY SINE Alu -5 306 1 1913 150 72 3 chr4 143286192 143286245 -59042102 + MER47A DNA MER2_type 258 357 -9 186 128 0 0 chr4 143287262 143287301 -59041046 + (A)n Simple_repeat Simple_repeat 1 39 0 5280 169 39 3 chr4 143287554 143288876 -59039471 - L1PA16 LINE L1 0 6166 4795 462 269 45 51 chr4 143288903 143289059 -59039288 + L2 LINE L2 3158 3312 -1 27 0 0 0 chr4 143289157 143289184 -59039163 + AT_rich Low_complexity Low_complexity 1 27 0 463 287 62 5 chr4 143289478 143289765 -59038582 + LTR16A LTR ERVL 105 446 -4 21 0 0 0 chr4 143289797 143289818 -59038529 + AT_rich Low_complexity Low_complexity 1 21 0 248 314 105 0 chr4 143290386 143290510 -59037837 + MER117 DNA MER1_type 11 147 -50 184 316 13 13 chr4 143292221 143292297 -59036050 + L3b LINE CR1 1213 1288 -295 741 308 33 60 chr4 143292307 143292671 -59035676 + LTR16A LTR ERVL 17 370 -80 237 180 0 0 chr4 143293022 143293072 -59035275 + GA-rich Low_complexity Low_complexity 1 50 0 243 357 0 0 chr4 143293440 143293510 -59034837 + L2 LINE L2 2993 3062 -210 33 0 0 0 chr4 143293689 143293722 -59034625 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr4 143294336 143294368 -59033979 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr4 143294459 143294482 -59033865 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chr4 143294620 143294662 -59033685 + AT_rich Low_complexity Low_complexity 1 42 0 713 179 0 0 chr4 143296056 143296173 -59032174 + FLAM_A SINE Alu 1 117 -16 423 376 35 14 chr4 143296318 143296664 -59031683 + L2 LINE L2 1733 2085 -1229 31 44 0 0 chr4 143296784 143296829 -59031518 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr4 143297913 143297936 -59030411 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr4 143298279 143298308 -59030039 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr4 143299394 143299437 -59028910 + AT_rich Low_complexity Low_complexity 1 43 0 429 291 141 15 chr4 143299917 143300116 -59028231 - MIR SINE MIR -37 225 2 235 279 77 0 chr4 143300150 143300254 -59028093 + L1MC/D LINE L1 5800 5911 -1897 567 303 6 20 chr4 143300312 143300513 -59027834 + MIR SINE MIR 19 222 -40 1928 114 38 0 chr4 143301753 143301875 -59026472 + AluSp SINE Alu 1 117 -196 369 0 0 0 chr4 143301875 143301916 -59026431 + (CA)n Simple_repeat Simple_repeat 2 42 0 1928 114 38 0 chr4 143301916 143302083 -59026264 + AluSp SINE Alu 117 301 -12 332 358 54 25 chr4 143302884 143303124 -59025223 + MIR SINE MIR 16 262 0 285 295 78 11 chr4 143303120 143303250 -59025097 - MIR SINE MIR -65 143 23 * 433 178 67 11 chr4 143303967 143304057 -59024290 - MER63 DNA MER1_type -338 724 4 2267 93 0 10 chr4 143304116 143304426 -59023921 - AluY SINE Alu -4 307 1 26 64 0 0 chr4 143304800 143304847 -59023500 + AT_rich Low_complexity Low_complexity 1 47 0 2394 111 11 24 chr4 143305012 143305392 -59022955 + THE1C LTR MaLR 1 375 0 1941 115 30 7 chr4 143305511 143305806 -59022541 + AluSg SINE Alu 1 302 -8 362 339 41 0 chr4 143305911 143306032 -59022315 - L2 LINE L2 -1 3312 3187 201 316 0 18 chr4 143306029 143306086 -59022261 - MIR3 SINE MIR -44 164 109 * 218 351 53 20 chr4 143306111 143306262 -59022085 - L3b LINE CR1 -324 1259 1104 228 185 0 19 chr4 143306386 143306440 -59021907 + A-rich Low_complexity Low_complexity 3 55 0 224 329 13 0 chr4 143308554 143308633 -59019714 - MIR SINE MIR -125 137 58 25 31 0 0 chr4 143308754 143308786 -59019561 + AT_rich Low_complexity Low_complexity 1 32 0 2002 115 11 3 chr4 143308786 143309072 -59019275 - AluSq SINE Alu -25 288 1 2060 110 38 0 chr4 143310557 143310847 -59017500 + AluSc SINE Alu 1 301 -8 21 0 0 0 chr4 143310932 143310953 -59017394 + AT_rich Low_complexity Low_complexity 1 21 0 5751 66 0 0 chr4 143310979 143311709 -59016638 + L1PA6 LINE L1 5416 6145 -9 1548 164 68 41 chr4 143311966 143312331 -59016016 - THE1C LTR MaLR 0 375 1 1966 229 63 43 chr4 143312398 143313045 -59015302 - MER76 LTR ERV 0 688 29 273 146 0 0 chr4 143313045 143313093 -59015254 + (CA)n Simple_repeat Simple_repeat 1 48 0 35 92 0 0 chr4 143313135 143313233 -59015114 + AT_rich Low_complexity Low_complexity 1 98 0 23 0 0 0 chr4 143313525 143313548 -59014799 + AT_rich Low_complexity Low_complexity 1 23 0 28 71 0 0 chr4 143313808 143313864 -59014483 + AT_rich Low_complexity Low_complexity 1 56 0 496 171 29 0 chr4 143313868 143313973 -59014374 - L1MB8 LINE L1 0 6178 6071 314 194 14 0 chr4 143316428 143316500 -59011847 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 5977 159 71 4 chr4 143316517 143317670 -59010677 - Tigger3b DNA MER2_type 0 1231 2 24 53 0 0 chr4 143317972 143318010 -59010337 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr4 143318123 143318146 -59010201 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 143318207 143318231 -59010116 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 143318328 143318352 -59009995 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr4 143321349 143321372 -59006975 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 321 360 6 12 chr4 143321690 143321862 -59006485 - L1MC4a LINE L1 -1898 5910 5740 257 269 92 28 chr4 143322324 143322465 -59005882 - L2 LINE L2 -48 3265 3116 577 359 114 29 chr4 143322511 143323021 -59005326 - L2 LINE L2 -496 2818 2266 225 214 31 0 chr4 143324160 143324258 -59004089 + (TA)n Simple_repeat Simple_repeat 2 102 0 221 208 21 0 chr4 143324273 143324321 -59004026 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 4053 145 34 9 chr4 143524581 143525661 -58802686 - L1PA15 LINE L1 -317 5848 4735 6593 153 38 6 chr4 143526035 143527228 -58801119 - Tigger3b DNA MER2_type 0 1231 1 356 299 86 73 chr4 143528778 143529012 -58799335 + MIR SINE MIR 2 238 -24 1500 201 53 0 chr4 143529378 143529662 -58798685 + AluJo SINE Alu 1 299 -13 6009 65 0 1 chr4 143529730 143530497 -58797850 - L1PA7 LINE L1 -3 6151 5386 3988 118 16 5 chr4 143530508 143531135 -58797212 - L1PA7 LINE L1 -963 5183 4550 1277 180 16 16 chr4 143531440 143531695 -58796652 - MER54B LTR ERVL 0 793 539 278 50 25 0 chr4 143532373 143532413 -58795934 + (TG)n Simple_repeat Simple_repeat 2 42 0 780 319 65 5 chr4 143532729 143533130 -58795217 + MER20B DNA MER1_type 1 425 -358 279 0 0 0 chr4 143533163 143533194 -58795153 + (TG)n Simple_repeat Simple_repeat 2 32 0 210 37 0 0 chr4 143533196 143533223 -58795124 + (GA)n Simple_repeat Simple_repeat 2 28 0 971 243 42 39 chr4 143533233 143533618 -58794729 - MLT2D LTR ERVL -67 397 1 465 234 157 25 chr4 143533742 143533977 -58794370 + MER20B DNA MER1_type 518 783 0 367 347 95 33 chr4 143534352 143534773 -58793574 + MLT1J2 LTR MaLR 1 447 -3 35 24 0 0 chr4 143535361 143535403 -58792944 + AT_rich Low_complexity Low_complexity 1 42 0 1975 87 45 11 chr4 143535450 143535736 -58792611 - AluSc SINE Alu -11 298 3 23 33 0 0 chr4 143535781 143535811 -58792536 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr4 143536204 143536234 -58792113 + AT_rich Low_complexity Low_complexity 1 30 0 24 77 0 0 chr4 143536476 143536528 -58791819 + AT_rich Low_complexity Low_complexity 1 52 0 411 171 118 53 chr4 143537040 143537192 -58791155 - MER53 DNA DNA -24 165 4 1279 231 106 55 chr4 143537365 143537893 -58790454 - MER34B LTR ERV1 0 565 11 44 88 0 0 chr4 143538187 143538301 -58790046 + AT_rich Low_complexity Low_complexity 1 114 0 735 183 177 92 chr4 143538526 143539159 -58789188 - MER4C LTR ERV1 0 695 2 22 35 0 0 chr4 143539479 143539508 -58788839 + AT_rich Low_complexity Low_complexity 1 29 0 520 146 10 0 chr4 143540182 143540278 -58788069 - L1PA15 LINE L1 -4 6161 6065 2640 203 14 15 chr4 143540279 143540984 -58787363 - L1P4 LINE L1 -717 6099 5399 2713 66 98 5 chr4 143540984 143541394 -58786953 - LTR7 LTR ERV1 -2 448 1 2323 101 50 13 chr4 143541394 143541772 -58786575 - HERVH LTR ERV1 0 7713 7322 1370 134 18 5 chr4 143541770 143541987 -58786360 - HERVH LTR ERV1 -1894 5819 5600 * 4371 136 0 3 chr4 143541991 143542652 -58785695 - HERVH LTR ERV1 -2567 5146 4488 3476 95 4 6 chr4 143542654 143543157 -58785190 - HERVH LTR ERV1 -3720 3993 3492 870 149 20 0 chr4 143543147 143543295 -58785052 - HERVH LTR ERV1 -4423 3290 3140 * 19072 103 35 6 chr4 143543291 143546191 -58782156 - HERVH LTR ERV1 -4728 2985 1 2538 76 108 7 chr4 143546193 143546600 -58781747 - LTR7 LTR ERV1 -2 448 1 12528 236 29 27 chr4 143546600 143551780 -58776567 - L1P4 LINE L1 -1392 5405 1 667 191 0 24 chr4 143551816 143551942 -58776405 + AluSg/x SINE Alu 162 284 -28 351 0 0 0 chr4 143551942 143551981 -58776366 + (CATA)n Simple_repeat Simple_repeat 2 40 0 23 33 0 0 chr4 143554111 143554141 -58774206 + AT_rich Low_complexity Low_complexity 1 30 0 1789 297 161 26 chr4 143554836 143555774 -58772573 + MER69 DNA AcHobo 1 1065 -1461 272 214 19 58 chr4 143555963 143556066 -58772281 + MER69 DNA AcHobo 2245 2343 -183 301 299 35 0 chr4 143556068 143556155 -58772192 + MIR SINE MIR 65 154 -108 213 288 72 24 chr4 143556193 143556292 -58772055 + MIR SINE MIR 73 176 -65 385 298 170 27 chr4 143556692 143557093 -58771254 + LTR33 LTR ERVL 3 499 -22 272 385 0 0 chr4 143558012 143558160 -58770187 + ERVL LTR ERVL 1584 1731 -4033 240 86 0 0 chr4 143558214 143558249 -58770098 + (CA)n Simple_repeat Simple_repeat 1 35 0 420 235 12 0 chr4 143558406 143558487 -58769860 - MER2 DNA MER2_type -262 83 2 550 246 202 72 chr4 143558510 143558901 -58769446 - MLT1F1 LTR MaLR -5 585 144 1497 247 55 55 chr4 143559378 143559977 -58768370 - L1ME2 LINE L1 -17 6147 5549 185 323 0 15 chr4 143560034 143560099 -58768248 + MIR SINE MIR 91 154 -108 21 82 0 0 chr4 143560855 143560904 -58767443 + AT_rich Low_complexity Low_complexity 1 49 0 272 100 0 20 chr4 143561383 143561433 -58766914 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 4351 142 164 26 chr4 143561433 143562429 -58765918 + MER11B LTR ERVK 1 1236 0 758 149 7 0 chr4 143562429 143562577 -58765770 + GA-rich Low_complexity Low_complexity 2 150 0 411 302 204 0 chr4 143563031 143563266 -58765081 + L1MC/D LINE L1 5523 5805 -2003 21 57 0 0 chr4 143563809 143563844 -58764503 + AT_rich Low_complexity Low_complexity 1 35 0 21 82 0 0 chr4 143564408 143564457 -58763890 + AT_rich Low_complexity Low_complexity 1 49 0 2110 104 27 0 chr4 143568194 143568492 -58759855 - AluSp SINE Alu -7 306 1 27 0 0 0 chr4 143568747 143568774 -58759573 + AT_rich Low_complexity Low_complexity 1 27 0 2601 174 78 30 chr4 143569128 143569721 -58758626 - L1MC3 LINE L1 -7 7778 7158 863 249 76 67 chr4 143569721 143570062 -58758285 - MER2 DNA MER2_type 0 345 2 1742 207 17 68 chr4 143570063 143570537 -58757810 - L1MC3 LINE L1 -626 7159 6710 440 307 64 32 chr4 143570531 143570782 -58757565 - L1M4 LINE L1 -1849 4297 4039 * 492 250 20 95 chr4 143570770 143570970 -58757377 - L1MCb LINE L1 -5765 280 96 4385 198 27 16 chr4 143571147 143572038 -58756309 - MER54A LTR ERVL 0 901 1 27 73 0 0 chr4 143572206 143572261 -58756086 + AT_rich Low_complexity Low_complexity 1 55 0 585 190 78 49 chr4 143574483 143574625 -58753722 + MLT1B LTR MaLR 198 343 -47 14535 98 7 6 chr4 143575839 143576392 -58751955 + L1P LINE L1 2445 2996 -3150 2382 66 3 3 chr4 143576392 143576696 -58751651 - AluY SINE Alu -7 304 1 14535 98 7 6 chr4 143576696 143578275 -58750072 + L1P LINE L1 2996 4579 -1567 1145 131 6 0 chr4 143578375 143578558 -58749789 + L1PA15 LINE L1 5968 6151 -14 211 362 9 9 chr4 143578759 143578864 -58749483 + MIR3 SINE MIR 54 158 -50 443 311 115 0 chr4 143578929 143579112 -58749235 - MIR SINE MIR 0 262 59 2725 69 11 0 chr4 143579985 143580346 -58748001 - L1PA5 LINE L1 -2 6152 5788 24 67 0 0 chr4 143580485 143580530 -58747817 + AT_rich Low_complexity Low_complexity 1 45 0 26 50 0 0 chr4 143582135 143582175 -58746172 + AT_rich Low_complexity Low_complexity 1 40 0 1623 137 113 11 chr4 143582225 143582509 -58745838 + AluSp SINE Alu 1 313 0 26 0 0 0 chr4 143582841 143582867 -58745480 + AT_rich Low_complexity Low_complexity 1 26 0 264 122 0 0 chr4 143584262 143584303 -58744044 + (A)n Simple_repeat Simple_repeat 1 41 0 234 326 0 22 chr4 143584519 143584611 -58743736 + GA-rich Low_complexity Low_complexity 4 93 0 1593 186 49 22 chr4 143584895 143585260 -58743087 + THE1C LTR MaLR 1 375 0 2030 176 0 9 chr4 143586060 143586400 -58741947 + MER1B DNA MER1_type 1 337 0 288 326 54 32 chr4 143587507 143587728 -58740619 - MERVL LTR ERVL -393 5092 4867 1782 166 47 17 chr4 143587952 143588314 -58740033 + THE1C LTR MaLR 1 373 -2 9243 136 49 9 chr4 143588316 143589836 -58738511 + THE1C-int LTR MaLR 1 1580 0 1837 155 63 28 chr4 143589836 143590198 -58738149 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr4 143590274 143590295 -58738052 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr4 143590541 143590576 -58737771 + AT_rich Low_complexity Low_complexity 1 35 0 384 259 14 130 chr4 143590948 143591050 -58737297 + MIR SINE MIR 72 138 -124 1457 201 45 34 chr4 143591050 143591408 -58736939 - MLT1A1 LTR MaLR -3 362 1 384 259 14 130 chr4 143591408 143591521 -58736826 + MIR SINE MIR 138 262 0 1329 167 109 12 chr4 143591773 143592066 -58736281 - AluJb SINE Alu 0 318 1 1184 285 54 38 chr4 143593002 143593689 -58734658 + L1M4 LINE L1 3490 4187 -1959 470 283 7 14 chr4 143595572 143595710 -58732637 + L1PA13 LINE L1 1 137 -6650 8677 205 37 26 chr4 143595716 143596483 -58731864 + L1 LINE L1 3168 3925 -2221 1965 105 4 0 chr4 143596483 143596750 -58731597 + AluY SINE Alu 37 304 -7 8677 205 37 26 chr4 143596750 143598157 -58730190 + L1 LINE L1 3925 5366 -780 2056 154 72 0 chr4 143598154 143598843 -58729504 - L1PBa LINE L1 -3586 3276 2540 * 613 168 0 38 chr4 143598835 143598966 -58729381 - L1PBa LINE L1 -5908 955 830 * 7456 180 15 9 chr4 143598970 143599906 -58728441 + L1PB1 LINE L1 3755 4684 -1467 210 37 0 0 chr4 143599906 143599933 -58728414 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7456 180 15 9 chr4 143599933 143600670 -58727677 + L1PB1 LINE L1 4684 5415 -736 1804 117 99 0 chr4 143600670 143600953 -58727394 + AluSp SINE Alu 3 313 0 7456 180 15 9 chr4 143600953 143601660 -58726687 + L1PB1 LINE L1 5415 6148 -3 263 73 0 24 chr4 143601660 143601701 -58726646 + L1MB5 LINE L1 6127 6166 -8 676 198 40 6 chr4 143601963 143602140 -58726207 - L1ME3A LINE L1 -220 5950 5768 5215 99 21 15 chr4 143602142 143602937 -58725410 + L1PB1 LINE L1 5352 6151 0 * 7894 266 73 11 chr4 143602930 143603616 -58724731 + L1P LINE L1 1437 2080 -4066 2010 141 24 123 chr4 143603616 143604162 -58724185 + LTR22B LTR ERVK 1 492 0 7894 266 73 11 chr4 143604162 143605995 -58722352 + L1P LINE L1 2080 4128 -2018 3472 33 2 2 chr4 143605995 143606458 -58721889 - L1PA4 LINE L1 0 6155 5733 7894 266 73 11 chr4 143606458 143606579 -58721768 + L1P LINE L1 4128 4240 -1906 283 395 14 20 chr4 143607401 143607548 -58720799 - MIR SINE MIR -46 216 71 808 254 57 33 chr4 143607859 143608195 -58720152 + L1ME2 LINE L1 5288 5631 -533 1069 281 32 30 chr4 143608196 143608602 -58719745 + L1ME2 LINE L1 5748 6154 -10 306 293 130 38 chr4 143609052 143609291 -58719056 + L1ME LINE L1 5112 5372 -774 300 333 36 29 chr4 143609567 143609705 -58718642 + L2 LINE L2 3175 3313 0 22 35 0 0 chr4 143609744 143609773 -58718574 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr4 143612290 143612316 -58716031 + AT_rich Low_complexity Low_complexity 1 26 0 251 310 112 9 chr4 143612515 143612631 -58715716 - L3b LINE CR1 -196 1387 1260 182 125 0 50 chr4 143613657 143613697 -58714650 + (TATG)n Simple_repeat Simple_repeat 3 40 0 238 123 88 0 chr4 143613743 143613800 -58714547 + L1MCa LINE L1 2007 2068 -4358 347 215 41 6 chr4 143613835 143614007 -58714340 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 290 260 19 0 chr4 143614060 143614164 -58714183 + (TA)n Simple_repeat Simple_repeat 2 107 0 22 35 0 0 chr4 143614927 143614956 -58713391 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr4 143616806 143616831 -58711516 + AT_rich Low_complexity Low_complexity 1 25 0 267 327 138 12 chr4 143616992 143617246 -58711101 + L1ME LINE L1 5502 5787 -334 1271 161 124 11 chr4 143617678 143617945 -58710402 + AluJo SINE Alu 6 302 -10 898 254 18 14 chr4 143618056 143618395 -58709952 - MER76 LTR ERV -254 434 6 2094 241 61 19 chr4 143618404 143618928 -58709419 - MER77 LTR ERV1 -6 599 54 378 241 72 121 chr4 143618955 143619204 -58709143 + L2 LINE L2 1612 1848 -1466 658 335 72 50 chr4 143619229 143619642 -58708705 + MLT1J LTR MaLR 1 426 -85 2297 174 20 83 chr4 143619642 143620187 -58708160 - MLT2B2 LTR ERVL -4 511 1 658 335 72 50 chr4 143620187 143620233 -58708114 + MLT1J LTR MaLR 426 470 -41 777 182 27 0 chr4 143620407 143620555 -58707792 + MLT2C1 LTR ERVL 5 156 -241 2144 337 116 40 chr4 143620928 143622624 -58705723 + L2 LINE L2 482 2305 -1009 447 334 171 32 chr4 143622706 143623171 -58705176 + L2 LINE L2 2788 3313 0 * 605 336 66 44 chr4 143623167 143623960 -58704387 + L2 LINE L2 2455 3309 -4 24 32 0 0 chr4 143624040 143624071 -58704276 + AT_rich Low_complexity Low_complexity 1 31 0 1567 200 86 65 chr4 143624422 143624931 -58703416 - MLT2B1 LTR ERVL 0 520 1 20739 196 24 9 chr4 143624931 143628940 -58699407 - ERVL LTR ERVL -7 5757 1699 981 150 150 5 chr4 143628940 143629127 -58699220 + MSTA LTR MaLR 1 214 -214 564 154 11 0 chr4 143629127 143629218 -58699129 + MSTA LTR MaLR 335 426 -2 2309 211 28 39 chr4 143629219 143629758 -58698589 - ERVL LTR ERVL -4060 1704 1172 6396 196 106 33 chr4 143629762 143630315 -58698032 + MER52A LTR ERV1 1 513 -1242 2218 155 5 16 chr4 143630315 143630683 -58697664 + THE1B LTR MaLR 1 364 0 6396 196 106 33 chr4 143630683 143631696 -58696651 + MER52A LTR ERV1 513 1755 0 1957 230 56 9 chr4 143631697 143632747 -58695600 - ERVL LTR ERVL -4594 1170 2 279 0 0 0 chr4 143632778 143632809 -58695538 + (TG)n Simple_repeat Simple_repeat 1 31 0 25 31 0 0 chr4 143634750 143634782 -58693565 + AT_rich Low_complexity Low_complexity 1 32 0 224 280 0 9 chr4 143635554 143635661 -58692686 + (TA)n Simple_repeat Simple_repeat 1 106 0 389 278 74 74 chr4 143636324 143636876 -58691471 - L1MEd LINE L1 -4595 1801 1215 556 354 79 25 chr4 143636915 143637282 -58691065 + REP3 LTR ERV 4 390 -172 230 279 80 42 chr4 143637544 143637831 -58690516 - L1MEd LINE L1 -5285 1111 814 360 0 0 0 chr4 143637951 143637991 -58690356 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 279 0 0 0 chr4 143638008 143638039 -58690308 + (CA)n Simple_repeat Simple_repeat 2 32 0 3876 232 12 10 chr4 143638476 143639470 -58688877 - L1PA13 LINE L1 -3167 3630 2635 3944 76 12 23 chr4 143639474 143640039 -58688308 - L1PA7 LINE L1 -5 6149 5591 18057 156 81 8 chr4 143640039 143643569 -58684778 - L1P LINE L1 -2352 3794 10 6965 199 40 32 chr4 143643579 143644155 -58684192 - L1PA13 LINE L1 -4147 2650 2080 2017 156 0 9 chr4 143644155 143644470 -58683877 - AluSx SINE Alu 0 312 1 6965 199 40 32 chr4 143644470 143645623 -58682724 - L1PA13 LINE L1 -4717 2080 882 34444 113 8 14 chr4 143645762 143648632 -58679715 + L1PA7 LINE L1 11 2895 -3259 2287 119 0 0 chr4 143648632 143648935 -58679412 + AluSp SINE Alu 1 303 -10 34444 113 8 14 chr4 143648935 143652064 -58676283 + L1PA7 LINE L1 2895 5976 -178 296 135 0 6 chr4 143652064 143652119 -58676228 - Alu SINE Alu -258 41 2 1759 173 10 3 chr4 143652246 143652547 -58675800 + AluSx SINE Alu 1 303 -9 7424 34 3 2 chr4 143653182 143654140 -58674207 + L1PA4 LINE L1 5197 6155 0 3317 224 39 8 chr4 143654268 143655851 -58672496 + L1MC2 LINE L1 4404 6040 -260 1833 175 26 0 chr4 143656105 143656408 -58671939 + AluJb SINE Alu 2 312 0 214 283 0 0 chr4 143657087 143657140 -58671207 + GA-rich Low_complexity Low_complexity 2 54 0 339 0 59 0 chr4 143658082 143658133 -58670214 + (TA)n Simple_repeat Simple_repeat 1 54 0 300 207 110 0 chr4 143658133 143658215 -58670132 + L1MC4 LINE L1 6612 6702 -1340 285 29 0 0 chr4 143658215 143658249 -58670098 + (CA)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr4 143658396 143658419 -58669928 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr4 143660162 143660199 -58668148 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr4 143660810 143660833 -58667514 + AT_rich Low_complexity Low_complexity 1 23 0 189 200 22 0 chr4 143660971 143661016 -58667331 + L2 LINE L2 3263 3308 -5 1911 212 43 10 chr4 143661615 143662035 -58666312 + MLT2C2 LTR ERVL 1 482 -38 1414 270 60 25 chr4 143662238 143662672 -58665675 - MER70B LTR ERVL -128 450 2 199 298 144 10 chr4 143663541 143663645 -58664702 - L2 LINE L2 -1813 1501 1384 1740 140 0 0 chr4 143665418 143665668 -58662679 + AluSx SINE Alu 48 297 -15 21 89 0 0 chr4 143666645 143666701 -58661646 + AT_rich Low_complexity Low_complexity 1 56 0 306 0 0 0 chr4 143666821 143666855 -58661492 + (TG)n Simple_repeat Simple_repeat 2 35 0 1580 191 10 23 chr4 143666870 143667173 -58661174 - AluJb SINE Alu -13 299 1 2335 70 0 55 chr4 143667259 143667587 -58660760 + AluY SINE Alu 1 310 -1 1467 109 42 0 chr4 143667694 143667933 -58660414 + L1MA2 LINE L1 6056 6304 0 633 65 28 9 chr4 143668924 143669032 -58659315 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 463 350 26 9 chr4 143671178 143671404 -58656943 - MIR SINE MIR -26 236 7 22 35 0 0 chr4 143671504 143671533 -58656814 + AT_rich Low_complexity Low_complexity 1 29 0 4597 112 7 3 chr4 143671905 143672594 -58655753 - L1PA13 LINE L1 -4 6159 5468 2609 98 27 5 chr4 143672596 143672963 -58655384 - THE1C LTR MaLR 0 375 1 6121 159 15 8 chr4 143672963 143673990 -58654357 - THE1C-int LTR MaLR 0 1580 547 680 223 13 29 chr4 143674064 143674251 -58654096 + MER61D LTR ERV1 338 1237 -16 3084 164 20 13 chr4 143674257 143674890 -58653457 + L1P LINE L1 3073 3710 -2436 360 298 151 9 chr4 143674965 143675183 -58653164 + L1ME4a LINE L1 5604 5852 -269 1580 233 34 34 chr4 143676517 143676984 -58651363 - MLT1C LTR MaLR 0 467 1 184 316 51 0 chr4 143677773 143677852 -58650495 - L3b LINE CR1 -74 1509 1427 214 304 0 0 chr4 143677958 143678014 -58650333 - MIR SINE MIR -27 235 180 6199 101 23 0 chr4 143678309 143679278 -58649069 - L1PB1 LINE L1 -1 6150 5160 1556 75 0 5 chr4 143679280 143679493 -58648854 + L1PB1 LINE L1 5940 6151 0 21 0 0 0 chr4 143679981 143680002 -58648345 + AT_rich Low_complexity Low_complexity 1 21 0 195 389 0 14 chr4 143680375 143680447 -58647900 + L2 LINE L2 3160 3230 -42 21 36 0 0 chr4 143680752 143680780 -58647567 + AT_rich Low_complexity Low_complexity 1 28 0 1877 179 18 0 chr4 143681893 143682233 -58646114 + MLT1A1 LTR MaLR 1 346 -19 461 257 53 12 chr4 143683053 143683218 -58645129 - MER63 DNA MER1_type -70 766 2 26 30 0 0 chr4 143683988 143684021 -58644326 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr4 143684107 143684131 -58644216 + AT_rich Low_complexity Low_complexity 1 24 0 1985 139 0 0 chr4 143684312 143684599 -58643748 + AluSx SINE Alu 9 295 -17 4647 160 39 63 chr4 143685022 143686173 -58642174 - L1MA4A LINE L1 -12 6291 5151 * 41348 63 3 1 chr4 143686172 143692304 -58636043 + L1PA5 LINE L1 1 6146 -8 3565 183 21 0 chr4 143692344 143693059 -58635288 - L1MA4A LINE L1 -979 5167 4438 1175 193 17 4 chr4 143693162 143693400 -58634947 + L1 LINE L1 4090 4330 -1816 1699 163 108 25 chr4 143693612 143694011 -58634336 + MSTB1 LTR MaLR 1 432 0 1196 289 97 26 chr4 143694784 143695248 -58633099 - L2 LINE L2 -498 2816 2320 33 66 0 0 chr4 143696822 143696883 -58631464 + AT_rich Low_complexity Low_complexity 1 61 0 3099 311 216 12 chr4 143697125 143698823 -58629524 - L2 LINE L2 -1170 2144 100 21 0 0 0 chr4 143700147 143700168 -58628179 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr4 143700204 143700249 -58628098 + AT_rich Low_complexity Low_complexity 1 45 0 27 0 0 0 chr4 143700287 143700314 -58628033 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr4 143700867 143700889 -58627458 + AT_rich Low_complexity Low_complexity 1 22 0 182 318 71 24 chr4 143700986 143701071 -58627276 - MIR SINE MIR -81 127 39 22 35 0 0 chr4 143701387 143701416 -58626931 + AT_rich Low_complexity Low_complexity 1 29 0 243 241 0 0 chr4 143701678 143701732 -58626615 + (CA)n Simple_repeat Simple_repeat 2 55 0 471 261 62 28 chr4 143701921 143702097 -58626250 + L1ME1 LINE L1 5977 6158 -8 586 14 0 0 chr4 143702240 143702358 -58625989 + L1PA3 LINE L1 6083 6200 0 220 204 0 0 chr4 143702539 143702588 -58625759 + CT-rich Low_complexity Low_complexity 1 49 0 186 217 22 0 chr4 143704170 143704216 -58624131 + L2 LINE L2 3257 3303 -10 2308 98 3 0 chr4 143705384 143705690 -58622657 + AluSp SINE Alu 1 307 -6 26 74 0 0 chr4 143706397 143706451 -58621896 + AT_rich Low_complexity Low_complexity 1 54 0 223 247 31 10 chr4 143706740 143706837 -58621510 + (TA)n Simple_repeat Simple_repeat 2 100 0 771 236 104 12 chr4 143707364 143707412 -58620935 + MLT1A1 LTR MaLR 93 135 -230 7337 44 0 4 chr4 143707412 143709064 -58619283 + L1PA5 LINE L1 4507 6154 0 771 236 104 12 chr4 143709064 143709265 -58619082 + MLT1A1 LTR MaLR 135 365 0 215 296 12 12 chr4 143709969 143710050 -58618297 + (CATA)n Simple_repeat Simple_repeat 2 82 0 246 369 55 51 chr4 143710326 143710562 -58617785 + L2 LINE L2 2544 2780 -534 1739 248 51 72 chr4 143711067 143711749 -58616598 + LTR8 LTR ERV1 16 683 -8 569 202 24 42 chr4 143711794 143711962 -58616385 - L1MA9 LINE L1 -38 6274 6110 2022 258 54 28 chr4 143711993 143712945 -58615402 + L1ME1 LINE L1 4963 6162 -4 2575 243 89 53 chr4 143713087 143713910 -58614437 + MER21B LTR ERV1 1 852 -11 1419 257 66 31 chr4 143714019 143714532 -58613815 + LTR55 LTR ERV 1 531 -17 180 0 0 0 chr4 143714750 143714770 -58613577 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 411 323 80 30 chr4 143715215 143715478 -58612869 + HERVL LTR ERVL 3769 4044 -1610 282 361 17 0 chr4 143715778 143715897 -58612450 + LTR16A1 LTR ERVL 1 121 -336 354 281 167 16 chr4 143715938 143716130 -58612217 + LTR16A1 LTR ERVL 220 440 -17 469 379 32 16 chr4 143716201 143716510 -58611837 + HERVL LTR ERVL 4562 4875 -889 183 304 29 69 chr4 143717352 143717454 -58610893 + MIR SINE MIR 21 118 -90 429 20 0 0 chr4 143717818 143717868 -58610479 + (TA)n Simple_repeat Simple_repeat 1 50 0 279 213 12 50 chr4 143718785 143718865 -58609482 + L2 LINE L2 3235 3311 -2 881 138 7 0 chr4 143719577 143719715 -58608632 - AluSq/x SINE Alu -173 139 1 432 117 39 0 chr4 143720594 143720671 -58607676 - MADE1 DNA Mariner 0 80 1 7674 27 0 0 chr4 143721240 143722346 -58606001 - L1PA3 LINE L1 0 6155 5050 192 303 81 30 chr4 143724413 143724512 -58603835 - L2 LINE L2 0 3313 3210 271 318 131 0 chr4 143724920 143725027 -58603320 - L2 LINE L2 0 3313 3193 928 199 34 17 chr4 143725291 143725527 -58602820 + L1MC4 LINE L1 7363 7602 -440 1518 238 12 0 chr4 143727347 143727666 -58600681 + MER77 LTR ERV1 276 598 -7 21 95 0 0 chr4 143728091 143728154 -58600193 + AT_rich Low_complexity Low_complexity 1 63 0 1580 186 0 0 chr4 143728462 143728741 -58599606 + AluJb SINE Alu 1 279 -33 22 35 0 0 chr4 143729065 143729094 -58599253 + AT_rich Low_complexity Low_complexity 1 29 0 190 305 0 0 chr4 143731380 143731439 -58596908 - MIR SINE MIR -68 140 82 260 175 16 16 chr4 143731781 143731844 -58596503 + GA-rich Low_complexity Low_complexity 1 63 0 285 326 43 100 chr4 143731948 143732227 -58596120 - L2 LINE L2 -17 3255 2993 2134 108 3 13 chr4 143732249 143732555 -58595792 + AluSq SINE Alu 1 303 -10 28 29 0 0 chr4 143733083 143733118 -58595229 + AT_rich Low_complexity Low_complexity 1 35 0 209 146 21 0 chr4 143733468 143733516 -58594831 + (TA)n Simple_repeat Simple_repeat 1 49 0 311 115 0 19 chr4 143733947 143733999 -58594348 - Alu SINE Alu -250 51 1 215 91 0 45 chr4 143734028 143734072 -58594275 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 303 186 43 48 chr4 143734970 143735094 -58593253 + L1MC/D LINE L1 5723 5844 -303 297 320 40 40 chr4 143735109 143735234 -58593113 - L2 LINE L2 0 3313 3189 35 41 0 0 chr4 143735272 143735321 -58593026 + AT_rich Low_complexity Low_complexity 1 49 0 28 48 0 0 chr4 143735599 143735641 -58592706 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr4 143735778 143735813 -58592534 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr4 143736123 143736152 -58592195 + AT_rich Low_complexity Low_complexity 1 29 0 2043 125 3 34 chr4 143736266 143736587 -58591760 + AluSx SINE Alu 1 311 -1 7254 142 10 69 chr4 143737828 143738290 -58590057 + HSMAR2 DNA Mariner 1 489 -813 3667 168 36 11 chr4 143738290 143738988 -58589359 + LTR62 LTR ERVK 3 717 -2 7254 142 10 69 chr4 143738988 143739699 -58588648 + HSMAR2 DNA Mariner 489 1083 -219 473 215 215 0 chr4 143739699 143739843 -58588504 - FAM SINE Alu 0 175 1 7254 142 10 69 chr4 143739843 143740051 -58588296 + HSMAR2 DNA Mariner 1083 1302 0 202 139 28 0 chr4 143844460 143844496 -58483851 + (CATATA)n Simple_repeat Simple_repeat 4 40 0 220 243 129 14 chr4 143844638 143844708 -58483639 + MIR SINE MIR 21 98 -110 719 132 21 35 chr4 143844849 143844993 -58483354 + AluSg/x SINE Alu 170 311 -1 649 227 7 21 chr4 143845894 143846035 -58482312 - MER20 DNA MER1_type -2 217 79 820 226 0 0 chr4 143846381 143846527 -58481820 - FAM SINE Alu -27 158 13 551 294 85 14 chr4 143846935 143847146 -58481201 + MIR SINE MIR 36 261 -1 25 0 0 0 chr4 143847663 143847688 -58480659 + AT_rich Low_complexity Low_complexity 1 25 0 699 279 203 30 chr4 143848141 143848844 -58479503 - L2 LINE L2 0 3313 2489 401 303 68 41 chr4 143849025 143849246 -58479101 + L1M4 LINE L1 4581 4807 -1339 328 297 85 30 chr4 143849358 143849829 -58478518 + L1M2 LINE L1 5071 5572 -728 24 32 0 0 chr4 143849868 143849899 -58478448 + AT_rich Low_complexity Low_complexity 1 31 0 335 250 3 20 chr4 143850191 143850291 -58478056 - MER58B DNA MER1_type 0 341 113 1272 50 0 0 chr4 143850297 143850458 -58477889 - L1PA5 LINE L1 -1 6153 5993 3975 56 0 8 chr4 143850605 143851106 -58477241 - L1PA5 LINE L1 -182 5972 5476 251 286 61 20 chr4 143851116 143851214 -58477133 - MER58B DNA MER1_type -239 102 1 351 0 0 0 chr4 143851526 143851565 -58476782 + (TA)n Simple_repeat Simple_repeat 2 40 0 470 297 169 48 chr4 143851771 143852192 -58476155 + HAL1 LINE L1 816 1287 -1220 1320 315 128 33 chr4 143852720 143852831 -58475516 + L2 LINE L2 2029 2128 -1185 2259 85 0 10 chr4 143852831 143853137 -58475210 - AluY SINE Alu -6 305 3 1320 315 128 33 chr4 143853137 143854149 -58474198 + L2 LINE L2 2128 3261 -52 637 230 22 7 chr4 143854403 143854542 -58473805 + AluJo SINE Alu 1 141 -171 2694 155 7 0 chr4 143854549 143854994 -58473353 - L1PA16 LINE L1 -95 6071 5624 213 39 0 0 chr4 143855022 143855048 -58473299 + (TA)n Simple_repeat Simple_repeat 2 27 0 351 203 0 0 chr4 143855048 143855122 -58473225 + (TG)n Simple_repeat Simple_repeat 2 75 0 336 311 0 0 chr4 143855122 143855212 -58473135 - L1MC4 LINE L1 -1339 6703 6614 219 69 0 0 chr4 143855212 143855241 -58473106 + (TA)n Simple_repeat Simple_repeat 2 30 0 447 192 115 0 chr4 143855241 143855345 -58473002 + FRAM SINE Alu 36 151 -25 3145 213 32 3 chr4 143856161 143856909 -58471438 - L1MA7 LINE L1 -2245 3901 3132 * 6418 192 22 34 chr4 143856908 143858670 -58469677 + L1MA7 LINE L1 3896 5620 -671 781 217 45 6 chr4 143858670 143858827 -58469520 - FRAM SINE Alu -3 163 1 6418 192 22 34 chr4 143858827 143859490 -58468857 + L1MA7 LINE L1 5620 6290 -1 201 108 0 0 chr4 143859720 143859757 -58468590 + (A)n Simple_repeat Simple_repeat 1 37 0 227 365 27 20 chr4 143860877 143861025 -58467322 - MIR SINE MIR -76 186 38 24 0 0 0 chr4 143861398 143861422 -58466925 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 143862236 143862258 -58466089 + AT_rich Low_complexity Low_complexity 1 22 0 38 39 0 0 chr4 143862506 143862558 -58465789 + AT_rich Low_complexity Low_complexity 1 52 0 687 306 53 20 chr4 143863264 143863812 -58464535 + MER76 LTR ERV 1 658 -30 304 77 39 0 chr4 143863814 143863866 -58464481 + (TG)n Simple_repeat Simple_repeat 2 55 0 277 371 43 0 chr4 143863879 143863995 -58464352 - MIR SINE MIR -72 190 70 1578 177 36 90 chr4 143864517 143864929 -58463418 + MLT1B LTR MaLR 1 390 0 24 32 0 0 chr4 143865023 143865054 -58463293 + AT_rich Low_complexity Low_complexity 1 31 0 188 402 11 0 chr4 143866117 143866204 -58462143 + L2 LINE L2 3185 3272 0 994 306 67 23 chr4 143866355 143867081 -58461266 + L2 LINE L2 2511 3275 -38 338 346 96 25 chr4 143867187 143867511 -58460836 + L2 LINE L2 2967 3313 0 1908 103 22 4 chr4 143867560 143867831 -58460516 - AluSq SINE Alu 0 313 38 300 70 0 0 chr4 143868532 143868575 -58459772 + (CA)n Simple_repeat Simple_repeat 2 44 0 203 164 33 16 chr4 143868575 143868581 -58459766 + (TA)n Simple_repeat Simple_repeat 1 5 -57 1469 214 4 0 chr4 143868581 143868856 -58459491 - AluJo SINE Alu -24 288 13 203 164 33 16 chr4 143868856 143868910 -58459437 + (TA)n Simple_repeat Simple_repeat 5 62 0 659 237 108 106 chr4 143868950 143869414 -58458933 + MER4C LTR ERV1 1 465 0 469 206 53 23 chr4 143869502 143869633 -58458714 + MER4C-int LTR ERV1 109 243 -6355 2634 86 58 21 chr4 143869777 143870209 -58458138 - LTR7 LTR ERV1 -2 448 1 2563 74 45 13 chr4 143870209 143870589 -58457758 - HERVH LTR ERV1 0 7713 7322 968 139 24 18 chr4 143870587 143870752 -58457595 - HERVH LTR ERV1 -1894 5819 5654 * 2569 135 0 27 chr4 143870779 143871337 -58457010 - HERVH LTR ERV1 -2609 5104 4488 3449 101 4 6 chr4 143871339 143871842 -58456505 - HERVH LTR ERV1 -3720 3993 3492 858 131 41 0 chr4 143871832 143871977 -58456370 - HERVH LTR ERV1 -4423 3290 3140 * 19793 93 11 34 chr4 143871971 143875029 -58453318 - HERVH LTR ERV1 -4726 2987 1 2477 102 56 14 chr4 143875031 143875461 -58452886 - LTR7 LTR ERV1 -2 448 1 911 202 105 43 chr4 143875700 143875958 -58452389 + MER4C-int LTR ERV1 994 1267 -5064 343 146 62 62 chr4 143875958 143876054 -58452293 + MER4C-int LTR ERV1 2985 3080 -3183 496 158 63 0 chr4 143876062 143876157 -58452190 + MER4C-int LTR ERV1 1560 1660 -4671 588 297 55 62 chr4 143876286 143876603 -58451744 + MER4C-int LTR ERV1 1849 2391 -3555 1389 211 93 94 chr4 143876669 143876750 -58451597 + MER4C-int LTR ERV1 785 865 -5367 3112 146 67 0 chr4 143876750 143877269 -58451078 - MER41C LTR ERV1 0 554 1 1389 211 93 94 chr4 143877269 143878190 -58450157 + MER4C-int LTR ERV1 865 3556 -2676 1446 201 19 0 chr4 143878196 143878492 -58449855 + AluJb SINE Alu 9 309 0 938 148 35 30 chr4 143878609 143878812 -58449535 + MER4C-int LTR ERV1 4248 4451 -3669 * 8229 153 38 30 chr4 143878806 143880422 -58447925 + MER4C-int LTR ERV1 4191 5819 -512 423 0 0 0 chr4 143880430 143880477 -58447870 + (CA)n Simple_repeat Simple_repeat 2 48 0 42005 41 23 1 chr4 143880483 143886090 -58442257 - L1P1 LINE L1 -416 5739 7 3448 95 17 27 chr4 143886099 143886786 -58441561 - MER11A LTR ERVK -486 750 1 1785 200 40 79 chr4 143886826 143886901 -58441446 - MER61C-int LTR ERV1 -4763 454 378 1499 106 0 0 chr4 143886901 143887099 -58441248 - AluY SINE Alu -14 297 100 1785 200 40 79 chr4 143887099 143887494 -58440853 - MER61C-int LTR ERV1 -4839 378 2 1792 153 92 73 chr4 143887494 143887907 -58440440 - MER61C LTR ERV1 0 434 14 239 265 0 0 chr4 143887875 143887924 -58440423 - LTR28 LTR ERV1 -959 61 13 * 785 201 19 13 chr4 143887926 143888085 -58440262 + MER4C-int LTR ERV1 6438 6597 -1 642 253 76 32 chr4 143888086 143888215 -58440132 + MER4C LTR ERV1 1 123 -342 1285 238 13 7 chr4 143888215 143888522 -58439825 - AluJb SINE Alu -1 311 3 642 253 76 32 chr4 143888522 143888641 -58439706 + MER4C LTR ERV1 123 260 -205 368 256 11 0 chr4 143888615 143888705 -58439642 + LTR34 LTR ERV1 429 519 -180 * 31 0 0 0 chr4 143888964 143888995 -58439352 + AT_rich Low_complexity Low_complexity 1 31 0 216 179 0 0 chr4 143889665 143889704 -58438643 + A-rich Low_complexity Low_complexity 1 39 0 333 336 23 0 chr4 143890035 143890166 -58438181 - Charlie8 DNA MER1_type -2196 221 88 32 57 0 0 chr4 143890595 143890648 -58437699 + AT_rich Low_complexity Low_complexity 1 53 0 261 230 69 0 chr4 143891074 143891161 -58437186 + HAL1 LINE L1 1034 1126 -1381 285 29 0 0 chr4 143891380 143891414 -58436933 + (TG)n Simple_repeat Simple_repeat 2 35 0 648 240 0 0 chr4 143891463 143891584 -58436763 - FLAM_A SINE Alu -21 121 1 235 259 111 9 chr4 143891630 143891738 -58436609 - L2 LINE L2 -43 3270 3152 353 121 0 15 chr4 143891745 143891811 -58436536 + (TA)n Simple_repeat Simple_repeat 2 66 0 24 0 0 0 chr4 143892440 143892464 -58435883 + AT_rich Low_complexity Low_complexity 1 24 0 654 240 62 36 chr4 143893556 143893781 -58434566 - MIR SINE MIR 0 262 32 453 189 0 0 chr4 143894540 143894635 -58433712 + CT-rich Low_complexity Low_complexity 1 95 0 2118 235 50 2 chr4 143894732 143895247 -58433100 - MER90 LTR ERV1 0 614 75 401 274 41 96 chr4 143895750 143895969 -58432378 - L2 LINE L2 0 3313 3107 1714 187 181 0 chr4 143895969 143896322 -58432025 + MSTB LTR MaLR 1 417 -9 5594 187 78 9 chr4 143896363 143897494 -58430853 + MSTB-int LTR MaLR 443 1651 0 2084 159 89 0 chr4 143897494 143897885 -58430462 + MSTB LTR MaLR 1 426 0 256 367 69 16 chr4 143897887 143898075 -58430272 - L2 LINE L2 -204 3109 2912 696 265 182 38 chr4 143898106 143898502 -58429845 - MLT1C LTR MaLR -14 453 1 649 328 123 29 chr4 143898515 143899003 -58429344 - L2 LINE L2 -425 2889 2356 477 326 45 45 chr4 143899080 143899390 -58428957 + L1MEd LINE L1 873 1182 -4937 1364 224 36 40 chr4 143899682 143900102 -58428245 + LTR37A LTR ERV1 9 426 0 317 243 75 28 chr4 143900527 143900634 -58427713 + MER31-int LTR ERV1 1028 1139 -3797 24 77 0 0 chr4 143900812 143900864 -58427483 + AT_rich Low_complexity Low_complexity 1 52 0 25 51 0 0 chr4 143901293 143901332 -58427015 + AT_rich Low_complexity Low_complexity 1 39 0 1568 217 85 64 chr4 143901799 143902329 -58426018 - LTR68 LTR ERV1 0 740 200 246 295 0 16 chr4 143902691 143902752 -58425595 + MER5A DNA MER1_type 44 103 -86 351 250 37 0 chr4 143903111 143903219 -58425128 + MER31-int LTR ERV1 3171 3282 -1654 2259 105 3 0 chr4 143903235 143903541 -58424806 + AluSx SINE Alu 1 307 -5 1253 266 41 86 chr4 143903701 143904507 -58423840 + MER31-int LTR ERV1 3404 4173 -763 1873 185 17 6 chr4 143904511 143904868 -58423479 + MLT1A1 LTR MaLR 5 365 0 1392 178 58 26 chr4 143904994 143905336 -58423011 + LTR37A LTR ERV1 22 374 -52 342 0 0 0 chr4 143905469 143905507 -58422840 + (CA)n Simple_repeat Simple_repeat 1 38 0 28 29 0 0 chr4 143905915 143905950 -58422397 + AT_rich Low_complexity Low_complexity 1 35 0 546 332 184 14 chr4 143906259 143906705 -58421642 + MLT1H LTR MaLR 12 533 -16 2888 211 31 7 chr4 143906724 143907307 -58421040 + MER77 LTR ERV1 7 603 -2 195 42 0 0 chr4 143908031 143908055 -58420292 + (T)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr4 143908529 143908553 -58419794 + AT_rich Low_complexity Low_complexity 1 24 0 509 315 124 34 chr4 143908574 143908961 -58419386 + ERVL LTR ERVL 1740 2161 -3603 762 361 56 2 chr4 143909158 143909584 -58418763 + ERVL LTR ERVL 2456 2904 -2860 364 288 163 38 chr4 143909600 143909760 -58418587 - MER5A DNA MER1_type 0 189 10 1152 330 76 37 chr4 143909777 143910774 -58417573 + ERVL LTR ERVL 2903 3938 -1716 186 43 0 0 chr4 143910851 143910874 -58417473 + (TTTTC)n Simple_repeat Simple_repeat 4 26 0 1049 304 47 43 chr4 143910898 143911342 -58417005 + ERVL LTR ERVL 4104 4549 -1105 21 0 0 0 chr4 143912499 143912520 -58415827 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 143913186 143913208 -58415139 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr4 143913525 143913558 -58414789 + AT_rich Low_complexity Low_complexity 1 33 0 708 361 95 35 chr4 143913824 143914474 -58413873 + L2 LINE L2 2258 2946 -368 207 0 0 0 chr4 143915114 143915137 -58413210 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 21 36 0 0 chr4 143916596 143916624 -58411723 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 143917085 143917108 -58411239 + AT_rich Low_complexity Low_complexity 1 23 0 30 59 0 0 chr4 143917318 143917369 -58410978 + AT_rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr4 143917997 143918022 -58410325 + AT_rich Low_complexity Low_complexity 1 25 0 23 78 0 0 chr4 143919200 143919251 -58409096 + AT_rich Low_complexity Low_complexity 1 51 0 181 291 78 39 chr4 143919288 143919391 -58408956 - L3 LINE CR1 -283 1294 1188 300 325 33 7 chr4 143919554 143919705 -58408642 - L1MEc LINE L1 -5348 765 611 320 342 59 37 chr4 143919993 143920367 -58407980 - L1MEc LINE L1 -5951 445 64 413 332 59 21 chr4 143920434 143920621 -58407726 - MIR SINE MIR -49 213 20 217 312 210 0 chr4 143920816 143920954 -58407393 - MIR SINE MIR -3 259 93 23 0 0 0 chr4 143921298 143921321 -58407026 + AT_rich Low_complexity Low_complexity 1 23 0 391 299 71 13 chr4 143921409 143921563 -58406784 - MIR SINE MIR -14 248 86 220 219 8 32 chr4 143921786 143921909 -58406438 + CT-rich Low_complexity Low_complexity 3 122 0 24 77 0 0 chr4 143924748 143924800 -58403547 + AT_rich Low_complexity Low_complexity 1 52 0 225 380 0 0 chr4 143925355 143925447 -58402900 + L2 LINE L2 1872 1963 -1351 1173 341 88 42 chr4 143925467 143926569 -58401778 + L2 LINE L2 2156 3313 0 212 245 0 19 chr4 143927955 143928008 -58400339 + GA-rich Low_complexity Low_complexity 3 54 0 241 317 81 32 chr4 143929401 143929622 -58398725 - MLT1K LTR MaLR -8 580 349 294 290 25 43 chr4 143929698 143929860 -58398487 - L2 LINE L2 -39 3274 3116 274 223 11 64 chr4 143929917 143930011 -58398336 - L2 LINE L2 -108 3205 3117 556 123 9 19 chr4 143931285 143931373 -58396974 + (TTCC)n Simple_repeat Simple_repeat 2 90 -16 1850 133 72 31 chr4 143931373 143931733 -58396614 - THE1C LTR MaLR 0 375 1 556 123 9 19 chr4 143931733 143931750 -58396597 + (TTCC)n Simple_repeat Simple_repeat 90 106 0 337 181 169 0 chr4 143932021 143932104 -58396243 - MLT1J2 LTR MaLR -274 176 80 2300 58 3 51 chr4 143932138 143932451 -58395896 - AluY SINE Alu -13 298 1 246 338 138 60 chr4 143932562 143933126 -58395221 + L2 LINE L2 2682 3272 0 498 73 12 37 chr4 143933224 143933306 -58395041 + L1P3 LINE L1 5742 5821 -333 387 211 0 0 chr4 143933471 143933561 -58394786 + (CATATA)n Simple_repeat Simple_repeat 1 90 0 215 250 155 36 chr4 143934613 143934697 -58393650 + L2 LINE L2 3173 3266 -6 238 325 26 0 chr4 143934722 143934799 -58393548 + MER97b DNA MER1_type? 9 87 -966 34 55 0 0 chr4 143934944 143934999 -58393348 + AT_rich Low_complexity Low_complexity 1 55 0 352 231 43 102 chr4 143935030 143935055 -58393292 + MER97c DNA MER1_type? 830 855 -235 2428 66 0 7 chr4 143935055 143935360 -58392987 - AluY SINE Alu -8 303 1 352 231 43 102 chr4 143935360 143935589 -58392758 + MER97c DNA MER1_type? 855 1069 -21 21 36 0 0 chr4 143935644 143935672 -58392675 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 143935964 143935994 -58392353 + AT_rich Low_complexity Low_complexity 1 30 0 315 284 0 0 chr4 143936008 143936103 -58392244 + MIR SINE MIR 112 206 -56 24 32 0 0 chr4 143939345 143939376 -58388971 + AT_rich Low_complexity Low_complexity 1 31 0 774 284 5 14 chr4 143941506 143941717 -58386630 + MIR SINE MIR 6 214 -48 261 191 16 32 chr4 143942033 143942096 -58386251 + LTR40a LTR ERVL 206 267 -252 227 360 82 7 chr4 143942154 143942301 -58386046 - MIR SINE MIR -26 236 79 353 313 118 3 chr4 143942929 143943152 -58385195 + MIR SINE MIR 11 256 -6 21 0 0 0 chr4 143943152 143943173 -58385174 + AT_rich Low_complexity Low_complexity 1 21 0 447 312 50 0 chr4 143943173 143943314 -58385033 - MIR SINE MIR -71 191 44 354 23 0 0 chr4 143944301 143944344 -58384003 + (CA)n Simple_repeat Simple_repeat 1 43 0 307 253 13 0 chr4 143944902 143944977 -58383370 - MIR SINE MIR -4 258 183 246 32 0 0 chr4 143945074 143945105 -58383242 + (GA)n Simple_repeat Simple_repeat 2 32 0 450 393 25 22 chr4 143945554 143945915 -58382432 + L2 LINE L2 1190 1551 -1763 2441 78 0 0 chr4 143946025 143946334 -58382013 - AluSc SINE Alu 0 309 1 480 346 23 14 chr4 143946650 143946867 -58381480 + MLT1H1 LTR MaLR 337 555 0 335 198 66 0 chr4 143946972 143947093 -58381254 + (TA)n Simple_repeat Simple_repeat 1 129 0 24 32 0 0 chr4 143948585 143948616 -58379731 + AT_rich Low_complexity Low_complexity 1 31 0 1022 26 0 0 chr4 143949510 143949627 -58378720 + AluY SINE Alu 181 297 -14 462 48 0 0 chr4 143953504 143953566 -58374781 + L1PA6 LINE L1 6089 6150 -4 3017 14 3 0 chr4 143953567 143953916 -58374431 + L1PA2 LINE L1 5800 6149 -6 23 0 0 0 chr4 143954562 143954585 -58373762 + AT_rich Low_complexity Low_complexity 1 23 0 291 248 48 12 chr4 143955037 143955122 -58373225 - MIR SINE MIR -61 147 64 280 256 99 41 chr4 143957887 143958008 -58370339 - MLT1J LTR MaLR -6 505 378 208 113 28 70 chr4 143958406 143958477 -58369870 + (TAAA)n Simple_repeat Simple_repeat 2 69 0 285 358 62 11 chr4 143958605 143958781 -58369566 + MLT1I LTR MaLR 36 220 -189 314 200 3 75 chr4 143958959 143959041 -58369306 - L1M3de LINE L1 -5219 672 337 227 234 64 50 chr4 143959137 143959278 -58369069 - HAL1b LINE L1 -1056 292 150 454 252 78 89 chr4 143960413 143960849 -58367498 - L1MEd LINE L1 -4872 1247 817 246 95 0 0 chr4 143960879 143960921 -58367426 + (TA)n Simple_repeat Simple_repeat 2 43 0 180 226 0 0 chr4 143961477 143961508 -58366839 + MER5B DNA MER1_type 14 44 -134 345 257 10 10 chr4 143961520 143961621 -58366726 - L1ME3A LINE L1 -5 6165 6065 23 0 0 0 chr4 143961761 143961784 -58366563 + AT_rich Low_complexity Low_complexity 1 23 0 428 299 149 7 chr4 143962803 143962957 -58365390 + MER5B DNA MER1_type 2 177 -1 21 0 0 0 chr4 143963226 143963247 -58365100 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 143963567 143963596 -58364751 + AT_rich Low_complexity Low_complexity 1 29 0 206 318 127 8 chr4 143963696 143963822 -58364525 + MIR SINE MIR 47 187 -75 24 53 0 0 chr4 143963885 143963923 -58364424 + AT_rich Low_complexity Low_complexity 1 38 0 1506 208 0 7 chr4 143963979 143964272 -58364075 + AluJo SINE Alu 1 291 -21 626 293 127 85 chr4 143964294 143965028 -58363319 + L2 LINE L2 2557 3312 -1 1106 259 109 30 chr4 143965090 143965598 -58362749 - MLT1G1 LTR MaLR 0 588 1 21 0 0 0 chr4 143967426 143967447 -58360900 + AT_rich Low_complexity Low_complexity 1 21 0 569 308 63 11 chr4 143968277 143968606 -58359741 - MLT1G LTR MaLR -162 380 31 641 345 22 0 chr4 143969005 143969283 -58359064 - ERVL LTR ERVL -1711 4053 3770 1957 88 4 0 chr4 143969519 143969793 -58358554 - L1PA8 LINE L1 -11 6161 5887 692 353 29 15 chr4 143969916 143970259 -58358088 - ERVL LTR ERVL -2395 3259 2912 1184 327 86 12 chr4 143970547 143971203 -58357144 - ERVL LTR ERVL -2438 2558 1891 2419 141 36 14 chr4 143971719 143972138 -58356209 - MSTC LTR MaLR 0 428 1 250 163 51 0 chr4 143972415 143972513 -58355834 + (TA)n Simple_repeat Simple_repeat 1 103 0 2151 122 0 0 chr4 143973565 143973868 -58354479 - AluSg SINE Alu -7 303 1 24 53 0 0 chr4 143974317 143974355 -58353992 + AT_rich Low_complexity Low_complexity 1 38 0 2196 101 0 10 chr4 143974586 143974894 -58353453 - AluSg SINE Alu -5 305 1 41 0 0 0 chr4 143975639 143975680 -58352667 + AT_rich Low_complexity Low_complexity 1 41 0 247 276 0 0 chr4 143975725 143975783 -58352564 + (CATATA)n Simple_repeat Simple_repeat 5 62 0 207 167 0 0 chr4 143976059 143976101 -58352246 + T-rich Low_complexity Low_complexity 1 42 0 601 271 62 36 chr4 143977076 143977301 -58351046 + MIR SINE MIR 28 258 -4 23 68 0 0 chr4 143978827 143978871 -58349476 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr4 143979020 143979050 -58349297 + AT_rich Low_complexity Low_complexity 1 30 0 26 64 0 0 chr4 143979264 143979311 -58349036 + AT_rich Low_complexity Low_complexity 1 47 0 317 394 52 4 chr4 143980219 143980450 -58347897 + ERVL LTR ERVL 4457 4698 -1066 238 365 56 0 chr4 143980482 143980589 -58347758 + LTR16C LTR ERVL 4 116 -375 369 280 51 0 chr4 143980748 143980866 -58347481 + LTR16C LTR ERVL 337 460 -31 187 29 0 59 chr4 143981270 143981304 -58347043 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 456 263 63 17 chr4 143982723 143982898 -58345449 + MIR SINE MIR 68 250 -12 330 369 52 7 chr4 143983931 143984202 -58344145 + L1M4 LINE L1 2269 2551 -3595 229 328 40 48 chr4 143985006 143985131 -58343216 - L2 LINE L2 -18 3295 3172 198 0 0 0 chr4 143985403 143985425 -58342922 + (CAGAT)n Simple_repeat Simple_repeat 2 23 0 26 30 0 0 chr4 143985504 143985537 -58342810 + AT_rich Low_complexity Low_complexity 1 33 0 236 365 59 24 chr4 143985677 143985932 -58342415 - L2 LINE L2 -798 2516 2253 234 335 63 77 chr4 143986279 143986566 -58341781 + L2 LINE L2 2922 3204 -109 363 309 90 29 chr4 143986613 143986991 -58341356 - L1M4 LINE L1 -2322 3824 3424 462 266 121 41 chr4 143987225 143987590 -58340757 - L1M4 LINE L1 -3001 3145 2752 638 152 80 0 chr4 143988297 143988422 -58339925 - L1PA15 LINE L1 -7 6158 6024 292 333 55 30 chr4 143988493 143988658 -58339689 + LTR16B LTR ERVL 129 297 -167 1728 211 12 18 chr4 143988661 143989003 -58339344 + MLT1B LTR MaLR 3 342 -48 288 203 0 40 chr4 143989023 143989097 -58339250 - MLT1D LTR MaLR -185 320 250 457 223 0 58 chr4 143989182 143989285 -58339062 - MLT1D LTR MaLR -408 97 1 240 82 118 0 chr4 143989394 143989479 -58338868 + (TA)n Simple_repeat Simple_repeat 1 95 0 27 0 0 0 chr4 143990263 143990290 -58338057 + AT_rich Low_complexity Low_complexity 1 27 0 1827 181 0 0 chr4 143991040 143991338 -58337009 + AluSx SINE Alu 1 298 -14 1763 15 0 10 chr4 143991338 143991540 -58336807 + AluYa5 SINE Alu 107 306 -5 23 0 0 0 chr4 143991736 143991759 -58336588 + AT_rich Low_complexity Low_complexity 1 23 0 253 164 27 0 chr4 143991767 143991840 -58336507 + (TA)n Simple_repeat Simple_repeat 1 75 0 204 224 0 0 chr4 143992204 143992253 -58336094 + A-rich Low_complexity Low_complexity 2 50 0 303 288 41 77 chr4 143993266 143993436 -58334911 + MIR SINE MIR 77 240 -22 314 160 63 39 chr4 143993531 143993653 -58334694 - L1MA4 LINE L1 -3 6297 6158 1658 162 0 31 chr4 143993659 143993949 -58334398 - AluJb SINE Alu -27 285 5 7936 195 20 27 chr4 143993991 143995794 -58332553 - L1 LINE L1 -867 5461 3671 1451 186 11 2 chr4 143995781 143996741 -58331606 - L1 LINE L1 -4327 1001 1 * 246 393 32 5 chr4 143997034 143997220 -58331127 + MLT1K LTR MaLR 73 263 -325 200 318 0 0 chr4 143997507 143997570 -58330777 + (CA)n Simple_repeat Simple_repeat 2 64 0 223 389 106 5 chr4 143997944 143998152 -58330195 - MIR SINE MIR 0 262 34 183 59 59 29 chr4 143998438 143998472 -58329875 + MIR SINE MIR 110 144 -118 21 0 0 0 chr4 143999558 143999579 -58328768 + AT_rich Low_complexity Low_complexity 1 21 0 288 259 45 96 chr4 144001453 144001606 -58326741 - MLT1J LTR MaLR -274 237 51 1236 280 15 15 chr4 144002266 144002546 -58325801 - MER63C DNA MER1_type -555 505 223 2490 169 38 22 chr4 144002546 144003080 -58325267 + MER34 LTR ERV1 1 542 0 1236 280 15 15 chr4 144003080 144003195 -58325152 - MER63C DNA MER1_type -836 224 110 760 164 34 0 chr4 144003196 144003342 -58325005 - L1MC2 LINE L1 -118 6226 6076 429 227 27 67 chr4 144003408 144003558 -58324789 + L2 LINE L2 3162 3305 -8 24 32 0 0 chr4 144003714 144003745 -58324602 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 144003952 144003973 -58324374 + AT_rich Low_complexity Low_complexity 1 21 0 248 380 104 10 chr4 144004680 144004872 -58323475 - MER90 LTR ERV1 -15 560 351 337 118 0 26 chr4 144004886 144004962 -58323385 + (TG)n Simple_repeat Simple_repeat 1 74 0 386 179 12 142 chr4 144005048 144005210 -58323137 - MER90 LTR ERV1 -384 191 51 2067 112 51 0 chr4 144005715 144006009 -58322338 - AluSg SINE Alu -1 309 1 496 340 61 32 chr4 144007257 144007569 -58320778 - MER110-int LTR ERV1 -1803 2844 2524 368 155 0 175 chr4 144007596 144007699 -58320648 + MER97b DNA MER1_type? 134 218 -835 1174 177 14 5 chr4 144007721 144007930 -58320417 + MER2 DNA MER2_type 1 211 -134 192 40 0 0 chr4 144007965 144007990 -58320357 + (TG)n Simple_repeat Simple_repeat 2 26 0 352 238 0 0 chr4 144007994 144008057 -58320290 + MER2 DNA MER2_type 283 345 0 7212 49 0 0 chr4 144009273 144010268 -58318079 - L1PA5 LINE L1 -4 6150 5157 255 305 34 25 chr4 144010475 144010593 -58317754 - MER110-int LTR ERV1 -4524 2277 2159 188 284 32 42 chr4 144010679 144010774 -58317573 + L2 LINE L2 1924 2017 -1297 419 109 16 0 chr4 144011336 144011400 -58316947 + MSTD LTR MaLR 20 84 -312 413 295 66 0 chr4 144012055 144012177 -58316170 - L2 LINE L2 -2 3311 3182 21 0 0 0 chr4 144012808 144012829 -58315518 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 144014236 144014257 -58314090 + AT_rich Low_complexity Low_complexity 1 21 0 584 304 36 10 chr4 144015435 144015744 -58312603 - L1MEc LINE L1 -3459 2756 2440 848 262 20 0 chr4 144015744 144015946 -58312401 - MER82 DNA MER2_type -2 651 446 249 352 62 17 chr4 144015970 144016149 -58312198 + MIR SINE MIR 2 188 -74 225 0 0 0 chr4 144016168 144016193 -58312154 + (TG)n Simple_repeat Simple_repeat 2 26 0 394 212 35 0 chr4 144016202 144016287 -58312060 - MER82 DNA MER2_type -565 88 1 824 253 63 97 chr4 144016288 144016950 -58311397 - L1MEc LINE L1 -3914 2482 1869 1377 201 0 87 chr4 144016950 144017296 -58311051 - AluJo SINE Alu 0 319 1 824 253 63 97 chr4 144017296 144017741 -58310606 - L1MEc LINE L1 -4527 1869 1411 626 165 19 0 chr4 144017762 144017865 -58310482 - U6 snRNA snRNA -2 105 1 1539 175 19 16 chr4 144017934 144018254 -58310093 - L1MA3 LINE L1 0 6305 5985 1658 182 12 12 chr4 144018284 144018614 -58309733 - L1 LINE L1 -2293 5272 4943 3955 153 37 14 chr4 144018616 144019311 -58309036 - MER50 LTR ERV1 -23 711 1 10449 213 47 7 chr4 144019316 144023336 -58305011 - L1 LINE L1 -2626 4939 107 5142 190 33 16 chr4 144023435 144025576 -58302771 + L1PA16 LINE L1 3978 6153 -13 27 0 0 0 chr4 144025576 144025603 -58302744 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr4 144026406 144026428 -58301919 + AT_rich Low_complexity Low_complexity 1 22 0 2199 104 3 3 chr4 144026462 144026759 -58301588 + AluSg SINE Alu 1 297 -13 314 236 56 0 chr4 144026778 144026850 -58301497 - L2 LINE L2 -2 3311 3236 21 95 0 0 chr4 144027028 144027091 -58301256 + AT_rich Low_complexity Low_complexity 1 63 0 715 321 168 21 chr4 144027110 144028086 -58300261 - L2 LINE L2 -171 3142 2079 25 0 0 0 chr4 144029423 144029448 -58298899 + AT_rich Low_complexity Low_complexity 1 25 0 31 0 0 0 chr4 144030348 144030379 -58297968 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr4 144031167 144031192 -58297155 + AT_rich Low_complexity Low_complexity 1 25 0 288 382 80 34 chr4 144031572 144032049 -58296298 - L2 LINE L2 -5 3308 2810 183 388 84 28 chr4 144032091 144032305 -58296042 - L2 LINE L2 -1401 1913 1688 1010 225 123 45 chr4 144032858 144033232 -58295115 - MLT1C LTR MaLR -64 403 1 23 33 0 0 chr4 144033248 144033278 -58295069 + AT_rich Low_complexity Low_complexity 1 30 0 1556 208 23 6 chr4 144033580 144033922 -58294425 + MER7A DNA MER2_type 1 346 0 1852 143 7 3 chr4 144034468 144034754 -58293593 + AluSx SINE Alu 21 307 -5 710 223 78 5 chr4 144034961 144035154 -58293193 - MER3 DNA MER1_type -1 208 2 330 97 0 42 chr4 144035652 144035724 -58292623 + (TA)n Simple_repeat Simple_repeat 1 69 0 2175 121 3 0 chr4 144035729 144036035 -58292312 + AluY SINE Alu 1 307 -4 22 35 0 0 chr4 144036391 144036420 -58291927 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 144036514 144036536 -58291811 + AT_rich Low_complexity Low_complexity 1 22 0 298 290 80 22 chr4 144036687 144036825 -58291522 + MIR SINE MIR 71 216 -46 191 328 0 0 chr4 144037718 144037782 -58290565 - MIR SINE MIR -148 114 51 666 298 34 54 chr4 144037796 144038205 -58290142 - L1MC4a LINE L1 -1873 5935 5535 3071 218 54 44 chr4 144038216 144039554 -58288793 - L1MB7 LINE L1 -16 6168 4823 243 213 55 79 chr4 144039576 144039740 -58288607 - L1MC4a LINE L1 -2376 5432 5273 26 74 0 0 chr4 144040918 144040972 -58287375 + AT_rich Low_complexity Low_complexity 1 54 0 3266 174 17 2 chr4 144041186 144041782 -58286565 - L1MC1 LINE L1 -8 6325 5721 2065 99 3 30 chr4 144042033 144042336 -58286011 - AluY SINE Alu -16 295 1 21 0 0 0 chr4 144042531 144042552 -58285795 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 144042815 144042837 -58285510 + AT_rich Low_complexity Low_complexity 1 22 0 1652 170 26 35 chr4 144043607 144043919 -58284428 - MER1B DNA MER1_type 0 339 31 313 205 36 18 chr4 144044013 144044125 -58284222 + (TA)n Simple_repeat Simple_repeat 1 114 0 21 0 0 0 chr4 144044922 144044943 -58283404 + AT_rich Low_complexity Low_complexity 1 21 0 10439 220 86 53 chr4 144046081 144053161 -58275186 + L1MA4 LINE L1 1 7352 -10 22 35 0 0 chr4 144056033 144056062 -58272285 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 144057121 144057149 -58271198 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 144057215 144057241 -58271106 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr4 144058417 144058454 -58269893 + AT_rich Low_complexity Low_complexity 1 37 0 953 120 10 26 chr4 144058574 144059289 -58269058 - HSATII Satellite Satellite -9 703 1 673 155 5 5 chr4 144059300 144059504 -58268843 - HSATII Satellite Satellite -1 204 1 426 174 22 7 chr4 144059515 144059653 -58268694 - HSATII Satellite Satellite -27 143 4 6732 81 6 2 chr4 144059753 144060634 -58267713 + HERVL-A1 LTR ERVL 4771 5654 0 2889 101 10 0 chr4 144060634 144061030 -58267317 + MLT2A1 LTR ERVL 1 400 -44 353 250 0 22 chr4 144061048 144061140 -58267207 - L1MC4 LINE L1 -1339 6703 6614 308 318 0 0 chr4 144061064 144061149 -58267198 + L1MC4 LINE L1 6614 6698 -1344 * 287 98 78 0 chr4 144061149 144061200 -58267147 + MLT2A2 LTR ERVL 399 453 0 735 140 0 0 chr4 144061281 144061388 -58266959 + AluJo/FLAM SINE Alu 2 108 -204 1092 105 0 0 chr4 144061388 144061531 -58266816 + AluSg/x SINE Alu 155 297 -13 14230 93 9 1 chr4 144062219 144064126 -58264221 - HERVK22 LTR ERVK -607 6230 4308 902 169 142 9 chr4 144064154 144064373 -58263974 - LTR22 LTR ERVK -261 248 1 3935 112 16 2 chr4 144064379 144064951 -58263396 - HERVK22 LTR ERVK -2530 4307 3728 280 200 0 0 chr4 144065317 144065362 -58262985 + FRAM/FAM SINE Alu 1 44 -122 914 330 26 6 chr4 144065432 144065781 -58262566 + ERVL LTR ERVL 4256 4611 -1153 335 222 82 21 chr4 144065820 144065922 -58262425 + ERVL LTR ERVL 4532 4632 -1022 605 14 14 0 chr4 144065982 144066056 -58262291 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 223 231 19 0 chr4 144066058 144066110 -58262237 + (TA)n Simple_repeat Simple_repeat 1 53 0 897 339 33 16 chr4 144066239 144066690 -58261657 + ERVL LTR ERVL 4886 5344 -420 22 35 0 0 chr4 144066777 144066806 -58261541 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr4 144066926 144066961 -58261386 + AT_rich Low_complexity Low_complexity 1 35 0 2127 83 0 83 chr4 144067415 144067742 -58260605 + AluY SINE Alu 3 302 -9 3558 113 0 29 chr4 144068808 144069329 -58259018 + HERVK22 LTR ERVK 6332 6837 0 1686 217 91 23 chr4 144069331 144069802 -58258545 + LTR22 LTR ERVK 3 505 -4 20441 92 12 5 chr4 144069805 144072547 -58255800 + HERVL LTR ERVL 1509 4269 -1385 2098 104 0 31 chr4 144072782 144073099 -58255248 + AluY SINE Alu 1 307 -4 265 254 164 0 chr4 144073252 144073319 -58255028 - L2 LINE L2 -40 3273 3196 1483 274 35 26 chr4 144073776 144074269 -58254078 - MLT1D LTR MaLR -8 497 1 27 49 0 0 chr4 144074316 144074357 -58253990 + AT_rich Low_complexity Low_complexity 1 41 0 1793 125 22 68 chr4 144074390 144074701 -58253646 - AluSx SINE Alu -15 297 1 989 128 0 0 chr4 144074701 144074834 -58253513 - AluSc SINE Alu -176 133 1 458 245 50 15 chr4 144076153 144076304 -58252043 + MLT1C LTR MaLR 333 467 0 1376 143 0 5 chr4 144076407 144076616 -58251731 - AluSc SINE Alu -101 208 1 220 388 113 6 chr4 144079361 144079521 -58248826 - MER5B DNA MER1_type 0 178 2 871 159 13 13 chr4 144080107 144080258 -58248089 - HERVK22 LTR ERVK -6083 754 604 5672 161 109 58 chr4 144080261 144081785 -58246562 - pTR5 LTR ERV1 0 2438 741 587 153 0 0 chr4 144081783 144081881 -58246466 - HERVK22 LTR ERVK -6230 607 510 * 1452 208 105 46 chr4 144081882 144082359 -58245988 - LTR22 LTR ERVK -4 505 1 10880 90 31 0 chr4 144082359 144083829 -58244518 - HERVL-A1 LTR ERVL -4139 1515 1 3401 68 9 5 chr4 144083830 144084271 -58244076 - MLT2A1 LTR ERVL -1 443 1 22 0 0 0 chr4 144085374 144085396 -58242951 + AT_rich Low_complexity Low_complexity 1 22 0 208 122 49 0 chr4 144086294 144086335 -58242012 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 198 241 19 0 chr4 144086339 144086393 -58241954 - MIR SINE MIR -24 238 184 330 295 64 40 chr4 144088137 144088349 -58239998 - MLT1H LTR MaLR -282 267 10 321 290 62 14 chr4 144088458 144088603 -58239744 + MIR SINE MIR 79 230 -32 22 0 0 0 chr4 144088762 144088784 -58239563 + AT_rich Low_complexity Low_complexity 1 22 0 2088 119 3 3 chr4 144089024 144089317 -58239030 - AluSp SINE Alu -15 298 6 315 233 0 0 chr4 144090339 144090399 -58237948 + MER6A DNA MER2_type 1 60 -545 2296 116 20 14 chr4 144091399 144091752 -58236595 - THE1A LTR MaLR 0 355 1 1002 199 58 133 chr4 144092176 144092568 -58235779 - MLT1A1 LTR MaLR 0 365 1 719 276 98 17 chr4 144092931 144093526 -58234821 + L1ME LINE L1 4902 5545 -617 23 54 0 0 chr4 144093635 144093672 -58234675 + AT_rich Low_complexity Low_complexity 1 37 0 1457 201 45 50 chr4 144093794 144094173 -58234174 + MLT1B LTR MaLR 3 379 -11 1889 199 235 51 chr4 144095577 144096206 -58232141 + LTR28 LTR ERV1 5 749 -271 298 219 0 22 chr4 144096177 144096277 -58232070 + MSTA LTR MaLR 81 193 -218 * 4079 11 0 0 chr4 144096277 144096739 -58231608 + L1PA2 LINE L1 5692 6153 -2 1150 173 100 0 chr4 144096771 144096991 -58231356 + MSTA LTR MaLR 187 428 0 2172 157 3 6 chr4 144097347 144097685 -58230662 + MER1B DNA MER1_type 1 337 0 262 283 20 20 chr4 144097852 144097951 -58230396 - MIR SINE MIR 0 262 164 792 217 108 37 chr4 144097970 144098196 -58230151 - Charlie2 DNA MER1_type -175 2687 2478 2571 127 34 12 chr4 144098196 144098613 -58229734 - MSTB LTR MaLR 0 426 1 792 217 108 37 chr4 144098613 144098814 -58229533 - Charlie2 DNA MER1_type -384 2478 2230 532 274 34 44 chr4 144098843 144099047 -58229300 - Charlie2 DNA MER1_type -2462 320 119 196 315 19 0 chr4 144100234 144100288 -58228059 - L2 LINE L2 0 3272 3218 225 0 0 0 chr4 144100346 144100371 -58227976 + (A)n Simple_repeat Simple_repeat 1 25 0 227 333 12 0 chr4 144100802 144100883 -58227464 + MIR SINE MIR 51 132 -130 24 77 0 0 chr4 144101031 144101083 -58227264 + AT_rich Low_complexity Low_complexity 1 52 0 827 227 62 100 chr4 144101287 144101858 -58226489 + MER52A LTR ERV1 666 1356 -399 246 228 0 141 chr4 144101932 144102024 -58226323 + MER52A LTR ERV1 1372 1450 -305 2351 168 62 14 chr4 144102153 144102640 -58225707 + LTR54 LTR ERV1 1 510 0 393 102 0 0 chr4 144102756 144102815 -58225532 + (CA)n Simple_repeat Simple_repeat 1 59 0 342 0 0 0 chr4 144103533 144103571 -58224776 + (CA)n Simple_repeat Simple_repeat 1 38 0 1705 165 10 20 chr4 144105177 144105480 -58222867 - LTR8 LTR ERV1 0 691 392 2187 228 41 45 chr4 144105576 144106090 -58222257 - LTR28 LTR ERV1 -71 949 438 234 238 32 0 chr4 144106123 144106186 -58222161 - LTR1 LTR ERV1 -600 185 121 657 200 90 19 chr4 144106223 144106378 -58221969 - LTR28 LTR ERV1 -854 166 1 * 1935 96 29 107 chr4 144106378 144106743 -58221604 - LTR8 LTR ERV1 -296 395 60 24319 158 14 18 chr4 144106743 144113150 -58215197 + L1HS LINE L1 2 6446 -24 261 119 0 0 chr4 144113150 144113192 -58215155 + (TAAAA)n Simple_repeat Simple_repeat 1 42 0 4046 109 2 17 chr4 144113194 144113798 -58214549 + L1PA8 LINE L1 5497 6091 -81 352 174 43 0 chr4 144114252 144114321 -58214026 - LTR8 LTR ERV1 -619 72 1 2603 190 16 39 chr4 144114524 144115093 -58213254 - MER4D LTR ERV1 0 903 348 5833 79 8 3 chr4 144115315 144116091 -58212256 - LTR17 LTR ERV1 0 780 1 1285 212 29 7 chr4 144116923 144117201 -58211146 - MER49 LTR ERV1 -637 286 3 26 50 0 0 chr4 144118287 144118327 -58210020 + AT_rich Low_complexity Low_complexity 1 40 0 536 382 96 21 chr4 144118434 144118508 -58209839 + L2 LINE L2 2565 2632 -682 3460 138 19 0 chr4 144118508 144119050 -58209297 - MER41A LTR ERV1 0 554 3 536 382 96 21 chr4 144119050 144119352 -58208995 + L2 LINE L2 2632 2969 -345 21 36 0 0 chr4 144119658 144119686 -58208661 + AT_rich Low_complexity Low_complexity 1 28 0 227 329 29 0 chr4 144120120 144120190 -58208157 - L2 LINE L2 -55 3258 3187 2961 218 66 16 chr4 144121113 144121913 -58206434 - L1MD2 LINE L1 -12 6347 5508 1588 147 75 0 chr4 144122151 144122416 -58205931 - AluSg SINE Alu -25 285 1 297 212 10 20 chr4 144122912 144122964 -58205383 + (TA)n Simple_repeat Simple_repeat 1 53 -45 2096 100 7 0 chr4 144122964 144123244 -58205103 - AluSq SINE Alu -31 282 1 297 212 10 20 chr4 144123244 144123290 -58205057 + (TA)n Simple_repeat Simple_repeat 53 98 0 1311 202 3 27 chr4 144123290 144123582 -58204765 - AluJo SINE Alu -27 285 1 278 192 0 0 chr4 144123898 144123950 -58204397 - MER117 DNA MER1_type -136 61 10 2131 114 7 3 chr4 144124250 144124558 -58203789 - AluY SINE Alu -2 309 1 5217 80 7 0 chr4 144125072 144125772 -58202575 - L1PA7 LINE L1 0 6154 5450 3408 91 9 2 chr4 144125774 144126324 -58202023 + L1ME LINE L1 4914 5466 -655 652 241 37 15 chr4 144126375 144126645 -58201702 + L1M4 LINE L1 2678 2953 -3193 2226 68 3 13 chr4 144126727 144127034 -58201313 - AluY SINE Alu -7 304 1 1510 62 0 62 chr4 144128350 144128560 -58199787 - AluY SINE Alu -114 197 1 33 43 0 0 chr4 144128608 144128655 -58199692 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr4 144129425 144129447 -58198900 + AT_rich Low_complexity Low_complexity 1 22 0 1398 181 8 27 chr4 144130023 144130283 -58198064 + AluJo SINE Alu 35 289 -23 207 344 97 20 chr4 144131609 144131804 -58196543 + L3 LINE CR1 559 768 -809 302 291 45 22 chr4 144133550 144133684 -58194663 - MLT1J2 LTR MaLR -278 169 32 180 0 0 0 chr4 144134271 144134291 -58194056 + (CATATA)n Simple_repeat Simple_repeat 4 23 0 6000 139 24 5 chr4 144134378 144135482 -58192865 + L1MA3 LINE L1 5181 6304 -1 279 328 109 8 chr4 144136606 144136725 -58191622 + MERVL LTR ERVL 3574 3704 -1781 331 280 14 84 chr4 144136789 144136932 -58191415 + MLT2E LTR ERVL 41 173 -455 227 275 29 0 chr4 144137217 144137286 -58191061 - L2 LINE L2 -205 3067 2997 267 402 12 30 chr4 144137748 144137912 -58190435 + L1MB1 LINE L1 2115 2275 -5211 599 288 48 16 chr4 144138066 144138316 -58190031 + L1MB1 LINE L1 2270 2527 -4969 1862 294 45 28 chr4 144138325 144140267 -58188080 + L1MB1 LINE L1 2404 4379 -3186 302 268 0 31 chr4 144140270 144140367 -58187980 - L1MC4 LINE L1 -1339 6703 6610 * 317 322 0 0 chr4 144140296 144140386 -58187961 + L1MC4 LINE L1 6614 6703 -1339 993 256 7 3 chr4 144140394 144140695 -58187652 + L1MB1 LINE L1 4385 4686 -2879 487 326 109 32 chr4 144140698 144141173 -58187174 + L1MA6 LINE L1 1216 1727 -5769 2064 156 14 19 chr4 144141237 144141603 -58186744 - THE1B LTR MaLR 0 364 1 10495 218 39 60 chr4 144141706 144142344 -58186003 + L1MA6 LINE L1 2259 2909 -4810 1541 192 13 23 chr4 144142344 144142651 -58185696 + AluJo SINE Alu 1 304 -8 10495 218 39 60 chr4 144142651 144145576 -58182771 + L1MA6 LINE L1 2909 5684 -2035 1758 152 3 36 chr4 144145576 144145940 -58182407 + AluSx SINE Alu 3 312 0 10495 218 39 60 chr4 144145940 144147597 -58180750 + L1MA6 LINE L1 5684 7375 -344 1347 208 176 2 chr4 144147604 144148007 -58180340 + L1MB1 LINE L1 5966 6438 -1127 2510 159 41 48 chr4 144148007 144148206 -58180141 + L1MB1 LINE L1 7008 7207 -380 1844 150 10 7 chr4 144148206 144148512 -58179835 + AluSx SINE Alu 1 307 -5 2510 159 41 48 chr4 144148512 144148896 -58179451 + L1MB1 LINE L1 7207 7587 0 27 73 0 0 chr4 144148898 144148953 -58179394 + AT_rich Low_complexity Low_complexity 1 55 0 1984 134 6 6 chr4 144149827 144150140 -58178207 - AluSq SINE Alu 0 313 1 42255 36 24 1 chr4 144150239 144156253 -58172094 + L1PA3 LINE L1 1 6154 -1 28 48 0 0 chr4 144156692 144156734 -58171613 + AT_rich Low_complexity Low_complexity 1 42 0 216 368 15 78 chr4 144158030 144158234 -58170113 + MIR3 SINE MIR 16 206 -2 208 190 35 17 chr4 144159388 144159446 -58168901 + GA-rich Low_complexity Low_complexity 2 60 0 21 0 0 0 chr4 144160743 144160764 -58167583 + AT_rich Low_complexity Low_complexity 1 21 0 333 263 65 1 chr4 144161313 144161425 -58166922 + MLT1H1 LTR MaLR 437 549 0 272 280 158 39 chr4 144161436 144161772 -58166575 + HAL1b LINE L1 516 891 -457 330 292 83 5 chr4 144161794 144161986 -58166361 + HAL1b LINE L1 944 1150 -198 715 216 18 35 chr4 144162031 144162202 -58166145 - MER3 DNA MER1_type -1 208 41 352 136 106 0 chr4 144162433 144162499 -58165848 + L1MC2 LINE L1 6260 6332 -12 21 71 0 0 chr4 144163660 144163702 -58164645 + AT_rich Low_complexity Low_complexity 1 42 0 1927 103 11 11 chr4 144166902 144167183 -58161164 + AluSx SINE Alu 3 283 -29 441 0 0 0 chr4 144167186 144167235 -58161112 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 375 290 19 52 chr4 144167244 144167399 -58160948 - MIR SINE MIR -104 158 9 209 367 83 37 chr4 144167883 144167992 -58160355 - L2 LINE L2 -22 3250 3137 222 371 67 0 chr4 144168775 144168880 -58159467 - MIR SINE MIR -117 145 34 258 154 96 0 chr4 144168929 144168981 -58159366 - MER92C LTR ERV1 -3 551 495 524 249 0 129 chr4 144169043 144169260 -58159087 - MER92B LTR ERV1 -365 189 1 22 0 0 0 chr4 144169423 144169445 -58158902 + AT_rich Low_complexity Low_complexity 1 22 0 452 376 6 12 chr4 144170317 144170479 -58157868 + MIR SINE MIR 15 175 -87 30355 126 16 60 chr4 144170676 144177125 -58151222 - L1PA3 LINE L1 -1 6469 2 422 244 78 17 chr4 144177127 144177242 -58151105 - MIR SINE MIR -31 231 110 435 343 11 6 chr4 144178281 144178456 -58149891 - MIR SINE MIR -57 205 30 340 260 42 10 chr4 144180113 144180209 -58148138 + L1MC4 LINE L1 6604 6702 -1340 343 351 83 0 chr4 144180659 144180864 -58147483 - L2 LINE L2 0 3313 3092 310 336 24 14 chr4 144180986 144181136 -58147211 - L2 LINE L2 -344 2928 2779 291 85 0 0 chr4 144181315 144181362 -58146985 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 182 402 52 0 chr4 144182002 144182099 -58146248 + MIR3 SINE MIR 4 105 -103 338 288 18 96 chr4 144182630 144182859 -58145488 + HAL1 LINE L1 2297 2507 0 325 267 56 31 chr4 144183027 144183188 -58145159 - MER103 DNA DNA 0 166 2 2233 230 42 16 chr4 144183849 144184463 -58143884 - L1MB7 LINE L1 -9 6175 5546 250 286 12 88 chr4 144184547 144184718 -58143629 - L1M4 LINE L1 -6288 254 97 23 0 0 0 chr4 144185203 144185226 -58143121 + AT_rich Low_complexity Low_complexity 1 23 0 23 86 0 0 chr4 144186032 144186090 -58142257 + AT_rich Low_complexity Low_complexity 1 58 0 270 283 71 35 chr4 144186250 144186363 -58141984 + L2 LINE L2 3197 3313 0 28 29 0 0 chr4 144186582 144186617 -58141730 + AT_rich Low_complexity Low_complexity 1 35 0 22 70 0 0 chr4 144186921 144186964 -58141383 + AT_rich Low_complexity Low_complexity 1 43 0 193 75 50 25 chr4 144187039 144187079 -58141268 + CT-rich Low_complexity Low_complexity 4 44 0 1315 206 106 0 chr4 144187082 144187364 -58140983 - AluSx SINE Alu 0 312 1 255 173 53 0 chr4 144187573 144187648 -58140699 + (TA)n Simple_repeat Simple_repeat 1 79 0 467 291 104 64 chr4 144188047 144188374 -58139973 + MLT1H LTR MaLR 194 533 -16 3246 213 109 85 chr4 144188426 144189450 -58138897 - L1MB7 LINE L1 0 6184 5027 504 191 0 0 chr4 144189450 144189534 -58138813 - AluSg/x SINE Alu -22 290 207 3246 213 109 85 chr4 144189534 144189926 -58138421 - L1MB7 LINE L1 -1157 5027 4646 25 0 0 0 chr4 144190361 144190386 -58137961 + AT_rich Low_complexity Low_complexity 1 25 0 2048 125 7 3 chr4 144191213 144191517 -58136830 + AluSc SINE Alu 1 305 -4 1031 235 32 20 chr4 144191775 144192219 -58136128 - L1MB7 LINE L1 -620 5554 5111 21 57 0 0 chr4 144193037 144193072 -58135275 + AT_rich Low_complexity Low_complexity 1 35 0 806 303 32 62 chr4 144193687 144194152 -58134195 - MLT1J LTR MaLR -33 478 28 302 207 0 0 chr4 144194221 144194279 -58134068 - MSTA LTR MaLR 0 428 371 658 112 28 84 chr4 144194379 144194522 -58133825 - THE1C LTR MaLR -240 135 1 24 32 0 0 chr4 144194872 144194903 -58133444 + AT_rich Low_complexity Low_complexity 1 31 0 1626 175 40 61 chr4 144195059 144195404 -58132943 + MLT1B LTR MaLR 2 340 -50 186 43 0 0 chr4 144195404 144195427 -58132920 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1626 175 40 61 chr4 144195427 144195459 -58132888 + MLT1B LTR MaLR 340 371 -19 2263 111 7 0 chr4 144195643 144195950 -58132397 - AluSc SINE Alu 0 309 1 708 216 60 18 chr4 144196213 144196380 -58131967 - MER45A DNA AcHobo 0 178 5 180 152 0 0 chr4 144196566 144196599 -58131748 + T-rich Low_complexity Low_complexity 1 33 0 1625 157 4 8 chr4 144196657 144196924 -58131423 - AluJb SINE Alu -33 279 14 21 36 0 0 chr4 144197626 144197654 -58130693 + AT_rich Low_complexity Low_complexity 1 28 0 296 263 166 58 chr4 144197892 144198097 -58130250 - MLT1L LTR MaLR -210 405 179 236 341 178 0 chr4 144198222 144198436 -58129911 - MLT1I LTR MaLR -98 311 60 13566 159 16 30 chr4 144198524 144198660 -58129687 - Tigger1 DNA MER2_type -4 2414 2278 2186 117 0 0 chr4 144198660 144198958 -58129389 - AluSg SINE Alu -12 298 1 13566 159 16 30 chr4 144198958 144200619 -58127728 - Tigger1 DNA MER2_type -140 2278 595 291 54 0 0 chr4 144200619 144200656 -58127691 + (CA)n Simple_repeat Simple_repeat 2 38 0 13566 159 16 30 chr4 144200656 144200685 -58127662 - Tigger1 DNA MER2_type -1823 595 567 3834 150 0 0 chr4 144200685 144201299 -58127048 - L1PA15 LINE L1 0 6165 5552 13566 159 16 30 chr4 144201299 144201919 -58126428 - Tigger1 DNA MER2_type -1851 567 1 1261 163 13 9 chr4 144204521 144204754 -58123593 + L1PA15 LINE L1 5932 6165 0 655 289 105 13 chr4 144204906 144205287 -58123060 + L1ME LINE L1 4631 5046 -1100 397 271 145 0 chr4 144205489 144205655 -58122692 + L1ME LINE L1 5394 5586 -576 1676 206 46 59 chr4 144205688 144205716 -58122631 + L1ME3A LINE L1 4707 4734 -1585 2122 127 16 44 chr4 144205716 144206102 -58122245 - THE1C LTR MaLR 0 375 1 1676 206 46 59 chr4 144206102 144206906 -58121441 + L1ME3A LINE L1 4734 5524 -795 269 316 103 58 chr4 144207100 144207391 -58120956 + L2 LINE L2 1719 2022 -1292 495 303 84 0 chr4 144207634 144207885 -58120462 + L1ME3A LINE L1 5633 5904 -266 2114 144 123 5 chr4 144208340 144208723 -58119624 - MSTA LTR MaLR 0 428 1 26 50 0 0 chr4 144210097 144210137 -58118210 + AT_rich Low_complexity Low_complexity 1 40 0 1595 175 110 42 chr4 144210139 144210564 -58117783 - MLT1C LTR MaLR -2 652 7 24 67 0 0 chr4 144211186 144211231 -58117116 + AT_rich Low_complexity Low_complexity 1 45 0 1910 105 54 0 chr4 144211375 144211669 -58116678 - AluSg SINE Alu 0 310 1 24 32 0 0 chr4 144214076 144214107 -58114240 + AT_rich Low_complexity Low_complexity 1 31 0 23 86 0 0 chr4 144214696 144214754 -58113593 + AT_rich Low_complexity Low_complexity 1 58 0 21 57 0 0 chr4 144215098 144215133 -58113214 + AT_rich Low_complexity Low_complexity 1 35 0 240 35 0 0 chr4 144216076 144216105 -58112242 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 225 0 0 0 chr4 144217063 144217088 -58111259 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 208 176 0 20 chr4 144217426 144217477 -58110870 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 2217 109 3 0 chr4 144218173 144218484 -58109863 + AluSx SINE Alu 1 312 0 258 32 0 0 chr4 144218692 144218723 -58109624 + (TC)n Simple_repeat Simple_repeat 2 32 0 198 0 0 0 chr4 144218722 144218744 -58109603 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 252 286 31 0 chr4 144219413 144219511 -58108836 - MER112 DNA MER1_type -12 248 148 2378 54 3 3 chr4 144220429 144220727 -58107620 - AluY SINE Alu -13 298 1 545 296 65 0 chr4 144222463 144222649 -58105698 - MIR SINE MIR -1 261 64 24 32 0 0 chr4 144223755 144223786 -58104561 + AT_rich Low_complexity Low_complexity 1 31 0 206 288 98 33 chr4 144224343 144224496 -58103851 + MIR SINE MIR 98 260 -2 258 354 0 0 chr4 144224695 144224791 -58103556 - MIR SINE MIR -57 205 110 6408 125 28 3 chr4 144225439 144226498 -58101849 + L1MA1 LINE L1 5182 6267 -35 25 0 0 0 chr4 144226498 144226523 -58101824 + AT_rich Low_complexity Low_complexity 1 25 0 39 38 0 0 chr4 144227200 144227253 -58101094 + AT_rich Low_complexity Low_complexity 1 53 0 30 27 0 0 chr4 144227437 144227474 -58100873 + AT_rich Low_complexity Low_complexity 1 37 0 235 356 98 17 chr4 144227698 144227872 -58100475 - MER5A DNA MER1_type -1 188 1 10890 93 14 2 chr4 144228064 144229662 -58098685 + L1PA7 LINE L1 2894 4508 -1638 5345 56 3 0 chr4 144229662 144230342 -58098005 + L1PA7 LINE L1 5473 6154 0 232 330 36 49 chr4 144231751 144231975 -58096372 + L2 LINE L2 862 1082 -2232 25 31 0 0 chr4 144232046 144232078 -58096269 + AT_rich Low_complexity Low_complexity 1 32 0 377 305 35 46 chr4 144234204 144234378 -58093969 - L2 LINE L2 -1 3312 3141 409 165 121 45 chr4 144234397 144234530 -58093817 - MLT1C LTR MaLR -353 114 1 201 39 0 0 chr4 144234538 144234564 -58093783 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 312 318 16 23 chr4 144234756 144234885 -58093462 - L2 LINE L2 -904 2410 2283 21 57 0 0 chr4 144234901 144234936 -58093411 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr4 144235400 144235439 -58092908 + AT_rich Low_complexity Low_complexity 1 39 0 213 349 125 10 chr4 144236063 144236255 -58092092 - MIR SINE MIR -11 251 38 26 0 0 0 chr4 144236789 144236815 -58091532 + AT_rich Low_complexity Low_complexity 1 26 0 24 67 0 0 chr4 144237452 144237497 -58090850 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr4 144238225 144238246 -58090101 + AT_rich Low_complexity Low_complexity 1 21 0 1730 184 3 3 chr4 144238383 144238693 -58089654 + AluSx SINE Alu 1 310 -2 479 126 0 23 chr4 144238693 144238780 -58089567 + (GGAGA)n Simple_repeat Simple_repeat 4 88 0 30 27 0 0 chr4 144239826 144239863 -58088484 + AT_rich Low_complexity Low_complexity 1 37 0 670 239 94 38 chr4 144239892 144240264 -58088083 - Charlie7 DNA MER1_type -651 1961 1569 397 284 34 57 chr4 144240330 144240434 -58087913 - MIR SINE MIR 0 262 162 3326 180 46 70 chr4 144240434 144241426 -58086921 + LTR5 LTR ERVK 1 969 0 397 284 34 57 chr4 144241426 144241497 -58086850 - MIR SINE MIR -100 162 91 1832 181 0 3 chr4 144241503 144241813 -58086534 - AluJb SINE Alu -3 309 1 270 148 0 0 chr4 144241851 144241905 -58086442 + L1MB3 LINE L1 6130 6183 0 6516 68 46 35 chr4 144242062 144242863 -58085484 - L1PA7 LINE L1 -2 6152 5303 2123 105 3 10 chr4 144242863 144243168 -58085179 - AluSc SINE Alu -6 303 1 6516 68 46 35 chr4 144243168 144243683 -58084664 - L1PA7 LINE L1 -851 5303 4795 25 65 0 0 chr4 144243915 144243961 -58084386 + AT_rich Low_complexity Low_complexity 1 46 0 28 61 0 0 chr4 144244388 144244437 -58083910 + AT_rich Low_complexity Low_complexity 1 49 0 347 269 97 7 chr4 144245317 144245462 -58082885 - L1ME LINE L1 -439 5682 5525 2026 92 0 72 chr4 144245984 144246327 -58082020 + AluSx SINE Alu 1 321 0 22 0 0 0 chr4 144246328 144246350 -58081997 + AT_rich Low_complexity Low_complexity 1 22 0 371 256 102 7 chr4 144246841 144246978 -58081369 - MIR SINE MIR -65 197 48 28 48 0 0 chr4 144247303 144247345 -58081002 + AT_rich Low_complexity Low_complexity 1 42 0 2257 87 0 19 chr4 144247352 144247664 -58080683 + AluY SINE Alu 3 308 -3 22 0 0 0 chr4 144248296 144248318 -58080029 + AT_rich Low_complexity Low_complexity 1 22 0 204 205 0 0 chr4 144249163 144249202 -58079145 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 71 0 0 chr4 144249640 144249682 -58078665 + AT_rich Low_complexity Low_complexity 1 42 0 186 43 0 0 chr4 144251670 144251693 -58076654 + (TG)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr4 144252020 144252042 -58076305 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 144252752 144252775 -58075572 + AT_rich Low_complexity Low_complexity 1 23 0 195 42 0 0 chr4 144252834 144252858 -58075489 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 196 281 62 0 chr4 144253271 144253335 -58075012 + MIR SINE MIR 120 187 -75 220 342 34 17 chr4 144253603 144253720 -58074627 + MIR SINE MIR 140 258 -4 25 65 0 0 chr4 144254344 144254390 -58073957 + AT_rich Low_complexity Low_complexity 1 46 0 392 333 50 60 chr4 144254887 144255187 -58073160 + LTR16C LTR ERVL 16 312 -179 26 0 0 0 chr4 144257562 144257588 -58070759 + AT_rich Low_complexity Low_complexity 1 26 0 412 228 79 26 chr4 144257619 144257733 -58070614 - L2 LINE L2 -3 3310 3191 2007 198 95 53 chr4 144258138 144258560 -58069787 + MLT2B2 LTR ERVL 1 404 -111 497 44 15 0 chr4 144258560 144258628 -58069719 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 2007 198 95 53 chr4 144258628 144258642 -58069705 + MLT2B2 LTR ERVL 404 416 -99 414 68 0 40 chr4 144258642 144258716 -58069631 + (TA)n Simple_repeat Simple_repeat 1 71 0 2007 198 95 53 chr4 144258716 144258772 -58069575 + MLT2B2 LTR ERVL 416 515 0 899 196 118 66 chr4 144258891 144259162 -58069185 + MLT1A1 LTR MaLR 77 361 -4 31 68 0 0 chr4 144260109 144260168 -58068179 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr4 144261859 144261880 -58066467 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr4 144262975 144263008 -58065339 + (CA)n Simple_repeat Simple_repeat 2 34 0 189 0 0 0 chr4 144263333 144263354 -58064993 + (CCAA)n Simple_repeat Simple_repeat 2 22 0 485 256 48 101 chr4 144263475 144263630 -58064717 - MLT2C1 LTR ERVL -98 299 42 595 207 16 0 chr4 144263630 144263751 -58064596 - MLT1E3 LTR MaLR -439 185 63 485 256 48 101 chr4 144263751 144263791 -58064556 - MLT2C1 LTR ERVL -355 42 1 1219 251 67 25 chr4 144264284 144265007 -58063340 - L1M4 LINE L1 -1538 4608 3797 309 303 141 3 chr4 144265028 144265332 -58063015 + L1ME3 LINE L1 5027 5372 -774 318 267 12 0 chr4 144265373 144265459 -58062888 + L1ME3 LINE L1 5467 5553 -613 1948 124 11 7 chr4 144265479 144265761 -58062586 + AluSg SINE Alu 13 295 -15 762 263 59 22 chr4 144265897 144266217 -58062130 + L1ME3 LINE L1 5650 5981 -181 26 50 0 0 chr4 144269712 144269752 -58058595 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 144269913 144269934 -58058413 + AT_rich Low_complexity Low_complexity 1 21 0 1334 234 43 38 chr4 144269974 144270368 -58057979 - MSTD LTR MaLR 0 396 1 1660 224 14 6 chr4 144270465 144270827 -58057520 - MLT1A1 LTR MaLR 0 365 1 28 48 0 0 chr4 144270975 144271017 -58057330 + AT_rich Low_complexity Low_complexity 1 42 0 1367 241 21 0 chr4 144271676 144271830 -58056517 - AluJo SINE Alu -24 288 124 288 0 0 0 chr4 144271830 144271862 -58056485 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1367 241 21 0 chr4 144271862 144271989 -58056358 - AluJo SINE Alu -188 124 1 634 359 102 27 chr4 144272320 144272693 -58055654 + L1M3a LINE L1 18 418 -5537 3662 257 82 46 chr4 144273038 144274957 -58053390 + L1M3a LINE L1 397 2382 -3652 9657 191 86 21 chr4 144274961 144276769 -58051578 - Tigger1 DNA MER2_type -5 2413 426 2103 71 8 0 chr4 144276769 144277036 -58051311 - AluY SINE Alu -3 308 40 9657 191 86 21 chr4 144277036 144277492 -58050855 - Tigger1 DNA MER2_type -1992 426 1 2600 233 75 14 chr4 144277495 144278368 -58049979 + L1M3a LINE L1 2383 3308 -2726 1822 172 9 0 chr4 144278363 144278689 -58049658 + L1M2 LINE L1 5489 5817 -483 * 553 163 0 0 chr4 144279077 144279169 -58049178 - ALR/Alpha Satellite centromeric -70 101 10 2113 123 0 7 chr4 144279183 144279485 -58048862 + AluSx SINE Alu 5 304 -8 1544 226 0 7 chr4 144279780 144280085 -58048262 + AluJo SINE Alu 1 303 -9 217 368 43 8 chr4 144280167 144280284 -58048063 - MIR SINE MIR -138 124 4 316 200 13 13 chr4 144280823 144280898 -58047449 + L1MA7 LINE L1 6198 6272 -19 320 378 114 17 chr4 144280974 144281379 -58046968 + L2 LINE L2 2809 3252 -61 640 308 82 50 chr4 144281940 144282498 -58045849 + L1ME LINE L1 43 618 -5501 1596 167 30 4 chr4 144283404 144283674 -58044673 - Tigger3(Golem) DNA MER2_type -3 3026 2750 344 336 82 55 chr4 144283698 144284261 -58044086 + L1ME LINE L1 4440 5017 -1112 241 293 12 19 chr4 144284599 144284767 -58043580 + L1ME LINE L1 5477 5643 -510 1919 162 21 26 chr4 144286622 144286999 -58041348 + THE1C LTR MaLR 1 375 0 9946 133 9 28 chr4 144287029 144288618 -58039729 + THE1C-int LTR MaLR 21 1580 0 1223 184 4 9 chr4 144288618 144288846 -58039501 + THE1C LTR MaLR 1 227 -148 1931 110 34 31 chr4 144288960 144289252 -58039095 + AluY SINE Alu 2 294 -17 1130 343 111 73 chr4 144290304 144290936 -58037411 + L2 LINE L2 235 842 -2472 1661 189 7 3 chr4 144290936 144291243 -58037104 - AluJb SINE Alu -4 308 1 1130 343 111 73 chr4 144291243 144292632 -58035715 + L2 LINE L2 842 2332 -982 543 295 127 31 chr4 144292993 144293315 -58035032 + L2 LINE L2 2309 2661 -653 278 315 179 103 chr4 144293405 144293852 -58034495 + L2 LINE L2 2833 3313 0 318 309 89 25 chr4 144295680 144296038 -58032309 + L1ME3A LINE L1 5558 5935 -235 27 0 0 0 chr4 144296051 144296078 -58032269 + AT_rich Low_complexity Low_complexity 1 27 0 4950 164 9 2 chr4 144296560 144297422 -58030925 - L1MC1 LINE L1 -17 6316 5449 3623 180 5 3 chr4 144297422 144298033 -58030314 + LTR9 LTR ERV1 1 612 0 32838 137 85 68 chr4 144298050 144305903 -58022444 + HUERS-P3b LTR ERV1 17 8034 -735 1906 117 36 4 chr4 144305903 144306199 -58022148 - AluY SINE Alu 0 305 1 32838 137 85 68 chr4 144306199 144306470 -58021877 + HUERS-P3b LTR ERV1 8034 8299 -470 951 174 0 0 chr4 144306466 144306621 -58021726 + HUERS-P3b LTR ERV1 8764 8918 -1 * 3901 148 8 5 chr4 144306621 144307231 -58021116 + LTR9 LTR ERV1 1 612 0 3937 131 5 14 chr4 144307405 144308046 -58020301 - MER41B LTR ERV1 0 635 1 38 22 0 0 chr4 144308051 144308096 -58020251 + AT_rich Low_complexity Low_complexity 1 45 0 30 0 0 0 chr4 144309923 144309953 -58018394 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr4 144310355 144310380 -58017967 + AT_rich Low_complexity Low_complexity 1 25 0 236 252 19 28 chr4 144310461 144310568 -58017779 - L1ME4a LINE L1 -9 6112 6007 387 315 39 33 chr4 144310773 144310954 -58017393 + MIR SINE MIR 81 262 0 31 44 0 0 chr4 144311935 144311980 -58016367 + AT_rich Low_complexity Low_complexity 1 45 0 234 312 75 32 chr4 144312012 144312198 -58016149 + MIR SINE MIR 56 249 -13 1360 288 70 47 chr4 144312479 144312723 -58015624 - L1MCc LINE L1 -4892 2049 1812 183 42 0 0 chr4 144312723 144312747 -58015600 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1360 288 70 47 chr4 144312747 144313737 -58014610 - L1MCc LINE L1 -5129 1812 814 880 328 77 19 chr4 144313916 144313980 -58014367 - L1MCc LINE L1 -5911 512 453 1354 52 11 0 chr4 144313980 144314154 -58014193 + L1PA4 LINE L1 5977 6152 -3 880 328 77 19 chr4 144314154 144314556 -58013791 - L1MCc LINE L1 -5970 453 19 22 0 0 0 chr4 144314715 144314737 -58013610 + AT_rich Low_complexity Low_complexity 1 22 0 1420 262 72 70 chr4 144315036 144315689 -58012658 - MLT1E1 LTR MaLR 0 654 1 30 59 0 0 chr4 144315715 144315766 -58012581 + AT_rich Low_complexity Low_complexity 1 51 0 580 300 66 43 chr4 144315830 144316087 -58012260 + MLT1I LTR MaLR 123 385 -24 21 0 0 0 chr4 144316840 144316861 -58011486 + AT_rich Low_complexity Low_complexity 1 21 0 304 287 82 78 chr4 144316891 144317159 -58011188 - HAL1b LINE L1 -739 609 341 549 304 149 32 chr4 144317668 144318010 -58010337 + L1MEd LINE L1 453 834 -5285 2093 116 3 7 chr4 144318418 144318728 -58009619 - AluSg SINE Alu -1 309 1 2135 177 25 25 chr4 144318807 144319241 -58009106 - Tigger2a DNA MER2_type 0 434 1 404 322 12 41 chr4 144319292 144319463 -58008884 - MER63A DNA MER1_type -1 209 44 200 121 30 0 chr4 144319508 144319541 -58008806 + T-rich Low_complexity Low_complexity 2 35 0 263 254 124 30 chr4 144322372 144322541 -58005806 - L1MC4a LINE L1 -1880 5928 5744 2096 139 0 3 chr4 144322877 144323187 -58005160 + AluSx SINE Alu 1 309 -3 237 278 44 0 chr4 144323187 144323277 -58005070 + L1M4 LINE L1 4510 4603 -1543 21 36 0 0 chr4 144323832 144323860 -58004487 + AT_rich Low_complexity Low_complexity 1 28 0 762 161 0 92 chr4 144324522 144324696 -58003651 - MER50 LTR ERV1 -130 604 447 * 978 179 82 10 chr4 144324683 144324890 -58003457 - MER50 LTR ERV1 -512 222 1 1015 111 19 12 chr4 144324890 144325052 -58003295 - MER50-int LTR ERV1 -8 7197 7035 488 16 16 0 chr4 144325052 144325113 -58003234 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 381 22 0 0 chr4 144325125 144325171 -58003176 + (TG)n Simple_repeat Simple_repeat 1 46 0 9277 137 25 5 chr4 144326422 144329345 -57999002 - L1PA11 LINE L1 -3 7609 4632 15916 207 43 21 chr4 144329537 144331005 -57997342 + L1M1 LINE L1 23 1457 -6108 8287 60 11 1 chr4 144331005 144332065 -57996282 - MER11C LTR ERVK 0 1071 1 15916 207 43 21 chr4 144332065 144333024 -57995323 + L1M1 LINE L1 1457 2393 -5172 3695 32 2 0 chr4 144333024 144333466 -57994881 + L1PA4 LINE L1 5705 6148 -7 15916 207 43 21 chr4 144333466 144335414 -57992933 + L1M1 LINE L1 2393 4502 -3063 2171 123 0 0 chr4 144335414 144335716 -57992631 + AluSg1 SINE Alu 1 302 -7 240 226 0 0 chr4 144335724 144335777 -57992570 + AluJ/monomer SINE Alu 1 53 -249 6273 169 18 20 chr4 144335787 144336962 -57991385 - Tigger1 DNA MER2_type -220 2198 1026 13719 195 31 12 chr4 144336983 144340198 -57988149 - L1PA14 LINE L1 -664 5497 2228 3979 140 12 25 chr4 144340200 144340870 -57987477 + L1PA14 LINE L1 5499 6159 -2 1382 170 11 23 chr4 144340870 144340996 -57987351 - Tigger1 DNA MER2_type -1442 976 850 1733 158 71 49 chr4 144340996 144341363 -57986984 + THE1C LTR MaLR 1 375 0 1382 170 11 23 chr4 144341363 144341501 -57986846 - Tigger1 DNA MER2_type -1568 850 715 1042 184 5 10 chr4 144341506 144341702 -57986645 - Tigger1 DNA MER2_type -2209 209 15 330 246 163 96 chr4 144344330 144344570 -57983777 + MIR SINE MIR 2 257 -5 2082 181 12 2 chr4 144344855 144345286 -57983061 - L1PA11 LINE L1 -2943 4641 4207 * 13527 188 32 15 chr4 144345282 144345639 -57982708 - L1PB1 LINE L1 0 6867 6518 405 0 0 0 chr4 144345639 144345684 -57982663 + (TA)n Simple_repeat Simple_repeat 1 45 0 348 24 0 0 chr4 144345683 144345724 -57982623 + (CA)n Simple_repeat Simple_repeat 2 42 0 * 13527 188 32 15 chr4 144345684 144348969 -57979378 - L1PB1 LINE L1 -349 6518 3291 411 21 0 0 chr4 144348969 144349017 -57979330 + (CA)n Simple_repeat Simple_repeat 1 48 0 13527 188 32 15 chr4 144349017 144349931 -57978416 - L1PB1 LINE L1 -3576 3291 2394 202 28 28 28 chr4 144349931 144349967 -57978380 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 13527 188 32 15 chr4 144349967 144350820 -57977527 - L1PB1 LINE L1 -4473 2394 1413 380 84 28 14 chr4 144350830 144350901 -57977446 - L1PB1 LINE L1 -5686 1177 1106 1055 173 11 0 chr4 144350901 144351092 -57977255 - L1PB1 LINE L1 -6668 195 3 7193 236 29 44 chr4 144351102 144352827 -57975520 - L1PA11 LINE L1 -3353 4231 2482 3182 109 11 7 chr4 144352827 144353278 -57975069 + MLT2A2 LTR ERVL 1 453 0 7193 236 29 44 chr4 144353278 144354669 -57973678 - L1PA11 LINE L1 -5102 2482 94 1521 86 0 0 chr4 144354677 144354893 -57973454 - AluY SINE Alu 0 317 102 2229 94 0 25 chr4 144354913 144355232 -57973115 - AluY SINE Alu 0 311 1 360 158 0 0 chr4 144355232 144355289 -57973058 - L1PA11 LINE L1 -7471 110 54 376 271 57 51 chr4 144355829 144356006 -57972341 - LTR33A LTR ERVL 0 523 346 1794 151 30 27 chr4 144356307 144356644 -57971703 - THE1C LTR MaLR -37 338 1 201 74 0 0 chr4 144356792 144356819 -57971528 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 349 273 42 56 chr4 144357394 144357537 -57970810 + MIR SINE MIR 88 228 -34 386 202 11 11 chr4 144357709 144357803 -57970544 - L1ME LINE L1 -423 5739 5646 622 162 19 133 chr4 144357835 144358045 -57970302 - MER53 DNA DNA -1 188 3 2195 87 7 10 chr4 144358513 144358813 -57969534 - AluSg SINE Alu -11 299 1 24 0 0 0 chr4 144359008 144359032 -57969315 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 144359159 144359187 -57969160 + AT_rich Low_complexity Low_complexity 1 28 0 193 396 44 0 chr4 144359308 144359399 -57968948 + L2 LINE L2 2985 3079 -193 23 68 0 0 chr4 144359732 144359776 -57968571 + AT_rich Low_complexity Low_complexity 1 44 0 4218 60 6 8 chr4 144359872 144360401 -57967946 + SVA Other Other 859 1386 0 274 313 62 0 chr4 144360520 144360632 -57967715 - MIR SINE MIR -64 198 80 2460 143 0 0 chr4 144360993 144361357 -57966990 + THE1B LTR MaLR 1 364 0 9691 116 39 44 chr4 144361359 144362943 -57965404 + THE1B-int LTR MaLR 3 1579 -1 2283 155 3 0 chr4 144362944 144363305 -57965042 + THE1B LTR MaLR 1 362 -2 1389 216 79 20 chr4 144364670 144365013 -57963334 + MLT1A1 LTR MaLR 1 363 -2 1395 274 76 25 chr4 144365044 144365791 -57962556 - MER69 DNA AcHobo -258 2268 1484 756 273 100 24 chr4 144365800 144366049 -57962298 - MER69 DNA AcHobo -944 282 15 194 145 72 12 chr4 144367460 144367543 -57960804 + (TA)n Simple_repeat Simple_repeat 2 89 0 21 0 0 0 chr4 144367999 144368020 -57960327 + AT_rich Low_complexity Low_complexity 1 21 0 2243 64 30 0 chr4 144368992 144369287 -57959060 - AluY SINE Alu -7 304 1 34 0 0 0 chr4 144369777 144369811 -57958536 + AT_rich Low_complexity Low_complexity 1 34 0 38 22 0 0 chr4 144369896 144369941 -57958406 + AT_rich Low_complexity Low_complexity 1 45 0 7526 24 17 0 chr4 144370566 144371551 -57956796 - L1PA3 LINE L1 0 6155 5160 31 0 0 0 chr4 144372756 144372787 -57955560 + AT_rich Low_complexity Low_complexity 1 31 0 309 375 70 8 chr4 144373047 144373290 -57955057 - MIR SINE MIR 0 262 5 22 56 0 0 chr4 144373608 144373644 -57954703 + AT_rich Low_complexity Low_complexity 1 36 0 474 291 120 39 chr4 144374400 144374891 -57953456 - L1M4 LINE L1 -1471 4675 4145 280 256 122 0 chr4 144375021 144375111 -57953236 + LTR52 LTR ERVL 1 101 -320 186 43 0 0 chr4 144375139 144375162 -57953185 + (A)n Simple_repeat Simple_repeat 1 23 0 342 0 0 0 chr4 144375412 144375450 -57952897 + (TG)n Simple_repeat Simple_repeat 1 38 0 332 230 27 0 chr4 144375450 144375524 -57952823 + LTR52 LTR ERVL 346 421 0 24 0 0 0 chr4 144375763 144375787 -57952560 + AT_rich Low_complexity Low_complexity 1 24 0 1507 171 55 87 chr4 144377317 144377720 -57950627 - MLT1B LTR MaLR 0 390 1 1581 177 46 25 chr4 144378333 144378700 -57949647 - THE1C LTR MaLR 0 375 1 202 175 0 35 chr4 144378777 144378834 -57949513 + CT-rich Low_complexity Low_complexity 4 58 0 209 125 0 21 chr4 144378882 144378930 -57949417 + (CCAA)n Simple_repeat Simple_repeat 2 48 0 1003 94 6 22 chr4 144379070 144379250 -57949097 + (TTCC)n Simple_repeat Simple_repeat 4 180 0 22 35 0 0 chr4 144380009 144380038 -57948309 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr4 144380395 144380430 -57947917 + AT_rich Low_complexity Low_complexity 1 35 0 39 0 0 0 chr4 144381048 144381087 -57947260 + AT_rich Low_complexity Low_complexity 1 39 0 898 265 96 27 chr4 144381368 144381775 -57946572 + MLT1C LTR MaLR 8 442 -25 841 250 31 13 chr4 144381922 144382221 -57946126 + AluJo SINE Alu 85 387 0 359 256 16 40 chr4 144382465 144382590 -57945757 + L1MEd LINE L1 290 411 -6235 2042 109 7 14 chr4 144382622 144382931 -57945416 + AluSg SINE Alu 2 308 0 1403 226 112 54 chr4 144383176 144384400 -57943947 + L1M4c LINE L1 816 2703 -3943 2179 108 0 0 chr4 144384434 144384731 -57943616 - AluSc SINE Alu -12 297 1 4649 269 47 35 chr4 144384734 144386767 -57941580 + L1M4c LINE L1 2703 4759 -1885 1972 128 17 0 chr4 144387140 144387436 -57940911 - AluSx SINE Alu -11 301 1 1046 329 98 35 chr4 144387940 144389103 -57939244 + L1MEd LINE L1 526 1761 -4873 314 250 85 67 chr4 144389125 144389289 -57939058 - MER63A DNA MER1_type 0 210 44 270 286 84 13 chr4 144389367 144389521 -57938826 + HAL1 LINE L1 1397 1561 -946 785 237 32 21 chr4 144389756 144389946 -57938401 - MLT1E2 LTR MaLR -44 610 419 972 238 30 47 chr4 144389964 144390262 -57938085 - MLT1E2 LTR MaLR -333 293 1 21 57 0 0 chr4 144391776 144391811 -57936536 + AT_rich Low_complexity Low_complexity 1 35 0 2022 136 0 13 chr4 144391821 144392131 -57936216 - AluSq SINE Alu -7 306 1 690 335 71 20 chr4 144392516 144392910 -57935437 + MLT1H1 LTR MaLR 142 555 0 1172 168 0 0 chr4 144393828 144394024 -57934323 + L1P LINE L1 3377 3572 -2574 2613 101 61 12 chr4 144394029 144394457 -57933890 + L1PA10 LINE L1 5710 6158 -10 8327 91 15 26 chr4 144394500 144395747 -57932600 - L1PA7 LINE L1 -1419 4727 3494 6824 73 6 0 chr4 144395747 144397187 -57931160 + L1PA7 LINE L1 4732 6153 -1 525 333 34 0 chr4 144397639 144397846 -57930501 + MIR SINE MIR 39 252 -10 25 31 0 0 chr4 144398678 144398710 -57929637 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr4 144398831 144398853 -57929494 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 144398967 144398995 -57929352 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr4 144399148 144399184 -57929163 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr4 144399307 144399330 -57929017 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr4 144399641 144399681 -57928666 + AT_rich Low_complexity Low_complexity 1 40 0 1835 133 162 24 chr4 144402928 144403304 -57925043 - MSTA LTR MaLR 0 428 1 2150 82 65 0 chr4 144403448 144403739 -57924608 + AluSg SINE Alu 1 310 0 28 29 0 0 chr4 144404520 144404555 -57923792 + AT_rich Low_complexity Low_complexity 1 35 0 2442 55 0 0 chr4 144405650 144405943 -57922404 + AluY SINE Alu 1 293 -18 272 155 86 9 chr4 144407222 144407338 -57921009 + (TA)n Simple_repeat Simple_repeat 2 126 0 23 33 0 0 chr4 144407534 144407564 -57920783 + AT_rich Low_complexity Low_complexity 1 30 0 811 296 97 20 chr4 144408588 144409031 -57919316 - L1ME1 LINE L1 -23 6143 5667 704 277 42 0 chr4 144409105 144409380 -57918967 - L1ME1 LINE L1 -720 5446 5165 3532 227 51 40 chr4 144409508 144409672 -57918675 + L1M2 LINE L1 1627 1788 -5060 1975 154 3 16 chr4 144409672 144409984 -57918363 + AluSx SINE Alu 3 310 -2 3532 227 51 40 chr4 144409984 144411638 -57916709 + L1M2 LINE L1 1788 3470 -3378 2291 92 0 3 chr4 144411638 144411942 -57916405 - AluY SINE Alu -8 303 1 3532 227 51 40 chr4 144411942 144412051 -57916296 + L1M2 LINE L1 3470 3576 -3272 455 270 20 0 chr4 144412057 144412157 -57916190 - MER74C LTR ERVL -294 166 65 913 305 40 0 chr4 144412201 144412696 -57915651 - L1ME1 LINE L1 -2847 3299 2785 2856 219 40 34 chr4 144412711 144413502 -57914845 - L1MC3 LINE L1 -17 7768 6973 * 3916 211 9 44 chr4 144413484 144414439 -57913908 + L1MC3 LINE L1 6864 7785 0 1056 216 113 62 chr4 144415617 144415988 -57912359 + MLT1B LTR MaLR 1 390 0 707 212 7 15 chr4 144416890 144417027 -57911320 + Tigger3(Golem) DNA MER2_type 7 142 -2887 * 1276 195 28 0 chr4 144417024 144417275 -57911072 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 1449 174 64 47 chr4 144418322 144418666 -57909681 + THE1C LTR MaLR 26 375 0 5171 150 47 13 chr4 144418666 144419537 -57908810 + THE1C-int LTR MaLR 1 901 -679 290 150 0 33 chr4 144419537 144419597 -57908750 + THE1C-int LTR MaLR 1523 1580 0 866 191 173 49 chr4 144419597 144419921 -57908426 + THE1C LTR MaLR 1 364 0 24 67 0 0 chr4 144420230 144420275 -57908072 + AT_rich Low_complexity Low_complexity 1 45 0 438 248 0 0 chr4 144421097 144421222 -57907125 + CT-rich Low_complexity Low_complexity 1 125 0 668 186 0 0 chr4 144421227 144421345 -57907002 - AluSg/x SINE Alu -10 302 185 2025 72 22 0 chr4 144421345 144421622 -57906725 + AluY SINE Alu 2 284 -27 902 284 117 24 chr4 144422120 144422624 -57905723 - L1ME1 LINE L1 -21 6145 5595 2365 52 0 0 chr4 144424037 144424327 -57904020 - AluY SINE Alu -16 295 6 1549 200 39 28 chr4 144424648 144425008 -57903339 + MLT1B LTR MaLR 1 364 -26 22 56 0 0 chr4 144425396 144425432 -57902915 + AT_rich Low_complexity Low_complexity 1 36 0 302 377 46 0 chr4 144425578 144425708 -57902639 - L2 LINE L2 -4 3268 3133 2560 214 39 11 chr4 144426367 144426990 -57901357 - L1MA10 LINE L1 0 6334 5695 315 185 11 54 chr4 144426979 144427003 -57901344 + L1MB1 LINE L1 6076 6099 -69 * 7173 165 22 2 chr4 144427003 144428278 -57900069 - HSMAR2 DNA Mariner 0 1302 3 315 185 11 54 chr4 144428278 144428345 -57900002 + L1MB1 LINE L1 6099 6163 -5 2716 358 44 27 chr4 144428472 144431001 -57897346 - HERVL LTR ERVL -22 5350 2842 536 345 126 0 chr4 144431105 144431398 -57896949 - LTR16B LTR ERVL -134 330 1 226 256 120 40 chr4 144431500 144431625 -57896722 + MIR SINE MIR 85 219 -43 21 0 0 0 chr4 144433068 144433089 -57895258 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr4 144433129 144433174 -57895173 + AT_rich Low_complexity Low_complexity 1 45 0 290 185 12 0 chr4 144433305 144433386 -57894961 + (TA)n Simple_repeat Simple_repeat 1 82 0 232 300 12 0 chr4 144433403 144433483 -57894864 + L1MC4 LINE L1 6614 6694 -1348 21 0 0 0 chr4 144434106 144434127 -57894220 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr4 144434914 144434949 -57893398 + AT_rich Low_complexity Low_complexity 1 35 0 27 49 0 0 chr4 144435004 144435045 -57893302 + AT_rich Low_complexity Low_complexity 1 41 0 999 259 123 38 chr4 144435076 144435554 -57892793 - LTR40a LTR ERVL 0 519 1 416 331 154 20 chr4 144435705 144436010 -57892337 - LTR16B LTR ERVL 0 464 119 933 239 24 5 chr4 144436368 144436577 -57891770 - MER58A DNA MER1_type 0 224 12 411 21 0 0 chr4 144436971 144437019 -57891328 + (TA)n Simple_repeat Simple_repeat 1 48 0 429 66 0 0 chr4 144437440 144437501 -57890846 + (TA)n Simple_repeat Simple_repeat 1 61 0 278 241 0 0 chr4 144439046 144439104 -57889243 + MER117 DNA MER1_type 5 62 -135 192 256 122 11 chr4 144439209 144439299 -57889048 + MIR SINE MIR 65 164 -98 184 281 0 35 chr4 144441478 144441535 -57886812 - MIR3 SINE MIR -16 192 138 24 0 0 0 chr4 144441651 144441675 -57886672 + AT_rich Low_complexity Low_complexity 1 24 0 21 71 0 0 chr4 144442012 144442054 -57886293 + AT_rich Low_complexity Low_complexity 1 42 0 2503 209 18 34 chr4 144442596 144443092 -57885255 + MER44D DNA MER2_type 1 544 -1943 2443 117 23 5 chr4 144443092 144443476 -57884871 - L1PA11 LINE L1 0 6174 5784 2503 209 18 34 chr4 144443476 144443534 -57884813 + MER44D DNA MER2_type 544 601 -4 301 383 50 0 chr4 144446032 144446173 -57882174 + L2 LINE L2 2873 3020 -293 230 296 74 0 chr4 144446173 144446254 -57882093 + MER91C DNA MER1_type 1 87 -53 322 298 234 13 chr4 144446305 144446540 -57881807 + L2 LINE L2 3021 3307 -6 832 212 0 0 chr4 144446724 144446889 -57881458 + FRAM SINE Alu 1 165 -1 25 31 0 0 chr4 144447119 144447151 -57881196 + AT_rich Low_complexity Low_complexity 1 32 0 560 261 0 0 chr4 144447378 144447517 -57880830 + FLAM_A SINE Alu 1 139 0 496 107 0 0 chr4 144447924 144447999 -57880348 + MADE1 DNA Mariner 6 80 0 21 0 0 0 chr4 144448513 144448534 -57879813 + AT_rich Low_complexity Low_complexity 1 21 0 279 337 54 33 chr4 144448570 144448754 -57879593 - MER5A DNA MER1_type -1 188 1 2558 176 57 49 chr4 144449084 144449631 -57878716 + L1M4c LINE L1 20 570 -5814 1795 204 22 29 chr4 144449627 144449756 -57878591 + L1M4c LINE L1 2207 2335 -4047 * 1472 150 53 8 chr4 144449756 144450022 -57878325 + AluSx SINE Alu 35 312 0 1795 204 22 29 chr4 144450022 144450607 -57877740 + L1M4c LINE L1 2335 2914 -3468 940 133 12 30 chr4 144450607 144450772 -57877575 + L1MB3 LINE L1 5560 5721 -450 502 176 0 11 chr4 144450773 144450864 -57877483 + MER46A DNA MER2_type 2 91 -145 * 5117 153 14 15 chr4 144450846 144451015 -57877332 + MER46A DNA MER2_type 1869 4294966840 -3187 17609 40 2 0 chr4 144451015 144453991 -57874356 - L1PA4 LINE L1 -3 6152 3205 5117 153 14 15 chr4 144453991 144454684 -57873663 + MER46A DNA MER2_type -457 235 -1 717 132 41 196 chr4 144454684 144454950 -57873397 + L1MB3 LINE L1 5719 5943 -240 1448 248 123 7 chr4 144455005 144455332 -57873015 + MER21B LTR ERV1 293 679 -184 273 29 0 0 chr4 144455332 144455366 -57872981 + (TG)n Simple_repeat Simple_repeat 1 34 0 1448 248 123 7 chr4 144455366 144455453 -57872894 + MER21B LTR ERV1 679 755 -108 1025 204 17 4 chr4 144455536 144455776 -57872571 + L1MB3 LINE L1 5938 6180 -3 248 308 9 0 chr4 144455941 144456048 -57872299 + L1ME LINE L1 5562 5669 -452 354 78 0 0 chr4 144456153 144456204 -57872143 + MADE1 DNA Mariner 30 80 0 21 0 0 0 chr4 144456207 144456228 -57872119 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 144456725 144456746 -57871601 + AT_rich Low_complexity Low_complexity 1 21 0 847 232 62 8 chr4 144456835 144457076 -57871271 + MER96B DNA MER1_type? 1 254 -163 389 298 50 14 chr4 144457077 144457218 -57871129 - MIR SINE MIR -110 152 7 1473 158 0 25 chr4 144457578 144457818 -57870529 + L1PA15 LINE L1 5820 6053 -112 443 134 0 0 chr4 144457818 144457885 -57870462 + AluSg/x SINE Alu 105 171 -139 596 159 0 0 chr4 144457885 144457998 -57870349 + L1PA15 LINE L1 6050 6162 -3 23 0 0 0 chr4 144457999 144458022 -57870325 + AT_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr4 144458169 144458221 -57870126 + AT_rich Low_complexity Low_complexity 1 52 0 2271 170 58 28 chr4 144458553 144458757 -57869590 - MER31A LTR ERV1 -6 479 283 2368 165 26 7 chr4 144458757 144459175 -57869172 - MSTB LTR MaLR 0 426 1 2271 170 58 28 chr4 144459175 144459435 -57868912 - MER31A LTR ERV1 -202 283 1 25 51 0 0 chr4 144461229 144461268 -57867079 + AT_rich Low_complexity Low_complexity 1 39 0 360 0 0 0 chr4 144461441 144461481 -57866866 + (TA)n Simple_repeat Simple_repeat 2 41 0 1939 159 8 44 chr4 144461509 144461898 -57866449 - THE1C LTR MaLR 0 375 1 9008 147 38 12 chr4 144461898 144463438 -57864909 - THE1C-int LTR MaLR 0 1580 1 1434 202 68 46 chr4 144463438 144463805 -57864542 - THE1C LTR MaLR 0 375 1 558 332 59 5 chr4 144464628 144464913 -57863434 + L2 LINE L2 2759 3074 -239 658 178 33 122 chr4 144464932 144465146 -57863201 + MER67D LTR ERV1 17 211 -303 2548 136 20 18 chr4 144465166 144465606 -57862741 + L1PB1 LINE L1 5711 6151 0 807 272 132 4 chr4 144465651 144465923 -57862424 + MER67D LTR ERV1 208 514 0 333 244 6 139 chr4 144465970 144466142 -57862205 + L2 LINE L2 3123 3271 -42 1216 197 4 0 chr4 144466310 144466538 -57861809 - MER46A DNA MER2_type -3 233 5 216 0 0 0 chr4 144467477 144467501 -57860846 + (T)n Simple_repeat Simple_repeat 1 24 0 243 169 77 0 chr4 144468040 144468105 -57860242 - Tigger1 DNA MER2_type -149 2269 2200 2426 121 13 5 chr4 144468106 144468478 -57859869 - THE1C LTR MaLR 0 375 1 8629 131 36 67 chr4 144468479 144470109 -57858238 - THE1C-int LTR MaLR -1 1579 1 2171 130 0 99 chr4 144470109 144470485 -57857862 - THE1C LTR MaLR 0 375 42 3142 83 0 5 chr4 144470485 144470906 -57857441 + L1PA8 LINE L1 5746 6164 -8 2171 130 0 99 chr4 144470906 144470945 -57857402 - THE1C LTR MaLR -333 42 1 * 11885 176 20 15 chr4 144470945 144473118 -57855229 - Tigger1 DNA MER2_type -215 2203 20 446 298 33 47 chr4 144473757 144473972 -57854375 + MIR SINE MIR 30 241 -21 270 230 135 47 chr4 144474201 144474349 -57853998 - L2 LINE L2 -61 3252 3092 36 40 0 0 chr4 144474456 144474506 -57853841 + AT_rich Low_complexity Low_complexity 1 50 0 1549 231 141 78 chr4 144474800 144475366 -57852981 - MER90 LTR ERV1 -2 612 11 559 238 101 24 chr4 144475652 144475820 -57852527 - L1MCb LINE L1 -5860 185 5 3382 83 377 0 chr4 144476537 144477137 -57851210 + LTR12 LTR ERV1 1 826 0 21 57 0 0 chr4 144477247 144477282 -57851065 + AT_rich Low_complexity Low_complexity 1 35 0 5225 67 6 26 chr4 144477610 144478310 -57850037 - LTR12 LTR ERV1 -2 686 1 599 309 69 58 chr4 144478907 144479031 -57849316 - L2 LINE L2 -3 3310 3189 2974 158 4 4 chr4 144479031 144479526 -57848821 - LOR1a LTR ERV1 -2 495 1 599 309 69 58 chr4 144479526 144479863 -57848484 - L2 LINE L2 -124 3189 2844 21 0 0 0 chr4 144481966 144481987 -57846360 + AT_rich Low_complexity Low_complexity 1 21 0 444 325 69 8 chr4 144482173 144482419 -57845928 + L1M4 LINE L1 11 271 -6588 1219 279 67 52 chr4 144483089 144483908 -57844439 + L1M4 LINE L1 1485 2290 -4669 243 0 0 0 chr4 144483908 144483935 -57844412 + (CA)n Simple_repeat Simple_repeat 2 28 0 1219 279 67 52 chr4 144483935 144483948 -57844399 + L1M4 LINE L1 2290 2301 -4658 198 103 0 0 chr4 144483948 144483977 -57844370 + (TA)n Simple_repeat Simple_repeat 2 30 0 1219 279 67 52 chr4 144483977 144484097 -57844250 + L1M4 LINE L1 2301 2452 -4507 282 299 50 64 chr4 144484213 144484574 -57843773 + L1M4 LINE L1 2473 2828 -4310 3479 253 68 84 chr4 144484715 144486397 -57841950 + L1M4 LINE L1 3834 5540 -1455 231 208 0 21 chr4 144486397 144486445 -57841902 + Tigger5 DNA MER2_type 1 47 -2276 * 269 215 123 0 chr4 144486421 144486486 -57841861 + Tigger5 DNA MER2_type 2251 2323 0 * 3479 253 68 84 chr4 144486486 144487466 -57840881 + L1M4 LINE L1 5581 6535 -460 1008 182 139 84 chr4 144487855 144488201 -57840146 - MLT1A1 LTR MaLR 0 365 1 37 23 0 0 chr4 144489024 144489068 -57839279 + AT_rich Low_complexity Low_complexity 1 44 0 2396 200 54 41 chr4 144489247 144489857 -57838490 + L1MA10 LINE L1 5721 6333 -1 1306 210 27 63 chr4 144490215 144490613 -57837734 - MER39 LTR ERV1 0 687 325 227 234 0 0 chr4 144490625 144490672 -57837675 - MER34 LTR ERV1 -420 122 76 266 289 146 15 chr4 144491609 144491766 -57836581 - L1M4 LINE L1 -589 5585 5403 2906 199 74 13 chr4 144492808 144493442 -57834905 + LTR58 LTR ERV1 1 673 -6 21 71 0 0 chr4 144494375 144494417 -57833930 + AT_rich Low_complexity Low_complexity 1 42 0 2074 94 10 14 chr4 144495743 144496040 -57832307 + AluY SINE Alu 3 298 -13 277 352 23 0 chr4 144496173 144496301 -57832046 + LTR16A LTR ERVL 314 444 -6 585 253 47 21 chr4 144496949 144497209 -57831138 - MER61D LTR ERV1 -14 748 340 2302 142 58 11 chr4 144597438 144597883 -57730464 + LTR17 LTR ERV1 315 780 0 383 152 40 104 chr4 144597883 144598008 -57730339 - L1MA9 LINE L1 -92 6220 6104 192 400 14 0 chr4 144598117 144598187 -57730160 - L2 LINE L2 -7 3265 3195 763 213 19 0 chr4 144598364 144598524 -57729823 + AluSq SINE Alu 2 164 -149 21 0 0 0 chr4 144599155 144599176 -57729171 + AT_rich Low_complexity Low_complexity 1 21 0 1312 190 154 0 chr4 144599704 144600009 -57728338 - MER46B DNA MER2_type 0 236 10 279 286 93 7 chr4 144600306 144600446 -57727901 - L1M4 LINE L1 -2450 3932 3781 238 314 59 15 chr4 144600750 144600954 -57727393 - L1M4 LINE L1 -4896 1488 1276 216 0 0 0 chr4 144601008 144601032 -57727315 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 346 20 39 0 chr4 144602273 144602324 -57726023 + (TA)n Simple_repeat Simple_repeat 2 54 0 2430 135 0 0 chr4 144602964 144603326 -57725021 - THE1B LTR MaLR 0 364 3 21 71 0 0 chr4 144604118 144604160 -57724187 + AT_rich Low_complexity Low_complexity 1 42 0 30 59 0 0 chr4 144604829 144604880 -57723467 + AT_rich Low_complexity Low_complexity 1 51 0 26 0 0 0 chr4 144605033 144605059 -57723288 + AT_rich Low_complexity Low_complexity 1 26 0 2760 248 60 26 chr4 144605601 144606254 -57722093 + Tigger6a DNA MER2_type 146 840 -757 7366 43 0 0 chr4 144606254 144607348 -57720999 + L1PA5 LINE L1 5056 6149 -5 2760 248 60 26 chr4 144607348 144607592 -57720755 + Tigger6a DNA MER2_type 840 1074 -9 222 312 0 13 chr4 144607816 144607893 -57720454 + L2 LINE L2 2765 2840 -474 309 317 85 15 chr4 144608225 144608424 -57719923 + L1M4 LINE L1 3661 3873 -2273 597 227 59 114 chr4 144608632 144609156 -57719191 + L1M4 LINE L1 4102 4596 -1550 288 184 0 0 chr4 144609302 144609351 -57718996 + LTR40b LTR ERVL 410 458 -4 391 304 36 0 chr4 144609359 144609497 -57718850 + L1ME3A LINE L1 6009 6151 -19 1863 141 34 3 chr4 144609924 144610222 -57718125 + AluSx SINE Alu 1 307 -5 377 307 152 19 chr4 144610227 144610543 -57717804 + L1M4 LINE L1 2736 3093 -3053 319 270 76 66 chr4 144611047 144611336 -57717011 + L1M4 LINE L1 2148 2439 -3707 961 234 0 10 chr4 144611460 144611665 -57716682 - Tigger7 DNA MER2_type 0 2491 2289 1160 183 42 63 chr4 144611672 144611957 -57716390 + AluJo SINE Alu 18 296 -16 464 208 31 31 chr4 144611958 144612088 -57716259 + THE1C LTR MaLR 1 130 -245 2126 111 0 3 chr4 144612840 144613138 -57715209 - AluY SINE Alu -14 297 1 335 330 90 39 chr4 144613979 144614212 -57714135 - L1ME LINE L1 -313 5808 5564 1790 121 0 4 chr4 144614240 144614496 -57713851 + L1P4 LINE L1 5438 5692 -482 1837 136 10 10 chr4 144616382 144616677 -57711670 - AluSx SINE Alu -13 299 5 1219 219 104 59 chr4 144617280 144617800 -57710547 - MER67C LTR ERV1 -12 502 1 2250 112 0 3 chr4 144618210 144618524 -57709823 - AluSq SINE Alu 0 313 1 21 57 0 0 chr4 144619290 144619325 -57709022 + AT_rich Low_complexity Low_complexity 1 35 0 232 86 0 0 chr4 144619325 144619360 -57708987 - L1PA16 LINE L1 -9 6157 6123 232 345 96 17 chr4 144619514 144619691 -57708656 - MIR SINE MIR -53 209 19 1994 138 12 6 chr4 144620754 144621094 -57707253 + L1PA13 LINE L1 5822 6163 0 278 312 71 12 chr4 144621325 144621495 -57706852 + L1MEc LINE L1 640 819 -5577 848 275 118 56 chr4 144621503 144622276 -57706071 + L1MEc LINE L1 862 1720 -4676 1823 83 15 4 chr4 144622276 144622540 -57705807 + L1MA1 LINE L1 6036 6302 0 848 275 118 56 chr4 144622540 144622829 -57705518 + L1MEc LINE L1 1720 1990 -4406 21 36 0 0 chr4 144623976 144624004 -57704343 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 144624822 144624843 -57703504 + AT_rich Low_complexity Low_complexity 1 21 0 333 136 0 0 chr4 144625004 144625070 -57703277 + (TA)n Simple_repeat Simple_repeat 1 66 0 1749 139 7 27 chr4 144625070 144625365 -57702982 - AluSx SINE Alu -23 289 1 664 306 121 69 chr4 144626686 144627723 -57700624 + L1MDa LINE L1 1601 2734 -3987 807 284 47 56 chr4 144627727 144628048 -57700299 + MLT1F LTR MaLR 3 320 -222 486 301 89 5 chr4 144628505 144628708 -57699639 - MIR SINE MIR -4 258 39 307 328 24 32 chr4 144629700 144629825 -57698522 - L2 LINE L2 0 3313 3190 21 0 0 0 chr4 144629951 144629972 -57698375 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr4 144631552 144631594 -57696753 + AT_rich Low_complexity Low_complexity 1 42 0 750 233 58 33 chr4 144632771 144633011 -57695336 + MLT1F LTR MaLR 294 539 -3 419 292 32 0 chr4 144633060 144633214 -57695133 + L1MDa LINE L1 2727 2885 -3655 3356 177 24 22 chr4 144633308 144633974 -57694373 + LTR51 LTR ERV1 5 671 0 357 294 94 36 chr4 144634043 144634611 -57693736 + L1MDa LINE L1 3280 3907 -2633 2110 125 0 7 chr4 144634611 144634907 -57693440 - AluSg SINE Alu -16 294 1 357 294 94 36 chr4 144634907 144635118 -57693229 + L1MDa LINE L1 3907 4104 -2436 970 287 133 0 chr4 144635372 144635696 -57692651 + MLT2C2 LTR ERVL 51 417 -47 445 113 10 21 chr4 144635696 144635793 -57692554 + (TCTA)n Simple_repeat Simple_repeat 1 96 0 247 172 0 52 chr4 144635829 144635887 -57692460 + MLT2C2 LTR ERVL 466 520 0 23 0 0 0 chr4 144637439 144637462 -57690885 + AT_rich Low_complexity Low_complexity 1 23 0 463 295 9 0 chr4 144637510 144637622 -57690725 + MER81 DNA DNA 1 113 -1 22 0 0 0 chr4 144638134 144638156 -57690191 + AT_rich Low_complexity Low_complexity 1 22 0 764 230 137 65 chr4 144638196 144638444 -57689903 - AluJo SINE Alu -46 266 1 760 251 53 8 chr4 144639819 144640062 -57688285 - MIR SINE MIR -4 258 5 180 111 0 0 chr4 144640446 144640473 -57687874 + (TG)n Simple_repeat Simple_repeat 2 28 0 887 214 153 122 chr4 144642493 144642983 -57685364 - MLT1E1 LTR MaLR 0 654 150 340 291 73 0 chr4 144643299 144643409 -57684938 + L1M4 LINE L1 3313 3430 -2716 372 22 0 0 chr4 144643419 144643464 -57684883 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 1807 221 94 49 chr4 144644513 144645043 -57683304 - MLT2B3 LTR ERVL 0 554 1 2101 136 19 27 chr4 144645348 144645715 -57682632 + THE1B LTR MaLR 1 364 0 267 31 0 0 chr4 144646001 144646033 -57682314 + (TA)n Simple_repeat Simple_repeat 2 33 0 269 333 0 0 chr4 144646033 144646111 -57682236 - MIR SINE MIR -132 130 53 255 175 0 0 chr4 144647196 144647236 -57681111 - FLAM SINE Alu -11 122 83 26 98 0 0 chr4 144647574 144647656 -57680691 + AT_rich Low_complexity Low_complexity 1 82 0 535 125 0 0 chr4 144647783 144647863 -57680484 - MADE1 DNA Mariner 0 80 1 2312 67 10 22 chr4 144648012 144648326 -57680021 + AluY SINE Alu 1 310 -1 22 70 0 0 chr4 144652059 144652102 -57676245 + AT_rich Low_complexity Low_complexity 1 43 0 253 261 0 15 chr4 144653789 144653854 -57674493 + MER94 DNA DNA 12 75 -59 323 335 56 19 chr4 144654172 144654333 -57674014 + MIR SINE MIR 40 206 -56 3745 96 36 4 chr4 144654374 144654929 -57673418 + LTR12 LTR ERV1 142 714 0 1073 263 71 5 chr4 144656675 144657123 -57671224 + MER45B DNA AcHobo 22 540 -500 417 314 63 38 chr4 144657231 144657518 -57670829 + LTR16C LTR ERVL 198 491 0 246 136 74 25 chr4 144658400 144658481 -57669866 + (TA)n Simple_repeat Simple_repeat 2 86 0 261 241 0 0 chr4 144658814 144658926 -57669421 + A-rich Low_complexity Low_complexity 1 112 0 3634 149 14 17 chr4 144658980 144659629 -57668718 + L1PA16 LINE L1 5517 6163 -3 2091 125 0 3 chr4 144660293 144660588 -57667759 + AluSq SINE Alu 1 294 -19 22 0 0 0 chr4 144660746 144660768 -57667579 + AT_rich Low_complexity Low_complexity 1 22 0 219 103 0 0 chr4 144661291 144661330 -57667017 + (TA)n Simple_repeat Simple_repeat 2 40 0 360 299 39 39 chr4 144661330 144661457 -57666890 + L2 LINE L2 3138 3264 -8 2222 91 3 0 chr4 144661625 144661921 -57666426 + AluSg SINE Alu 1 297 -13 3188 182 49 94 chr4 144662753 144663792 -57664555 - L1MB8 LINE L1 -4 6243 5267 7123 160 11 36 chr4 144663819 144666324 -57662023 - L1MA3 LINE L1 0 7724 5290 1446 166 59 29 chr4 144666324 144666631 -57661716 + THE1C LTR MaLR 60 375 0 15236 186 27 2 chr4 144666631 144669358 -57658989 - L1MA3 LINE L1 -4755 2810 16 7916 258 53 23 chr4 144669371 144671223 -57657124 - L1MB8 LINE L1 -955 5260 3294 4000 148 25 48 chr4 144671223 144672027 -57656320 + LTR1 LTR ERV1 1 785 0 7916 258 53 23 chr4 144672027 144673637 -57654710 - L1MB8 LINE L1 -2921 3294 1734 1743 280 61 33 chr4 144673659 144674613 -57653734 - L1M4c LINE L1 -4442 2696 1544 2263 98 16 0 chr4 144674613 144674920 -57653427 - AluSx SINE Alu 0 312 1 1743 280 61 33 chr4 144674920 144675027 -57653320 - L1M4c LINE L1 -5594 1544 1442 3290 221 17 43 chr4 144675034 144675782 -57652565 + MER44D DNA MER2_type 4 604 -1 802 257 198 40 chr4 144675782 144676206 -57652141 - L1M4c LINE L1 -5421 1438 948 199 412 15 15 chr4 144676913 144677044 -57651303 - MIR SINE MIR -112 150 20 818 86 77 0 chr4 144678015 144678132 -57650215 + AluY SINE Alu 6 131 -180 2401 75 0 3 chr4 144678141 144678446 -57649901 + AluY SINE Alu 3 306 -5 201 302 16 16 chr4 144679139 144679202 -57649145 - L2 LINE L2 -185 3087 3025 248 268 38 67 chr4 144679307 144679418 -57648929 - MIR SINE MIR -67 141 32 33 0 0 0 chr4 144680277 144680310 -57648037 + AT_rich Low_complexity Low_complexity 1 33 0 611 143 0 0 chr4 144680321 144680412 -57647935 - AluJ/FLAM SINE Alu -216 96 6 24 0 0 0 chr4 144681263 144681287 -57647060 + AT_rich Low_complexity Low_complexity 1 24 0 34 42 0 0 chr4 144681495 144681543 -57646804 + AT_rich Low_complexity Low_complexity 1 48 0 386 244 352 0 chr4 144681623 144681816 -57646531 - MIR SINE MIR 0 262 2 24 0 0 0 chr4 144681899 144681923 -57646424 + AT_rich Low_complexity Low_complexity 1 24 0 231 217 33 0 chr4 144682347 144682407 -57645940 - L1P LINE L1 -1359 4787 4726 330 161 18 0 chr4 144682411 144682467 -57645880 - THE1C LTR MaLR -1 374 318 772 161 8 8 chr4 144682467 144682597 -57645750 + AluSg/x SINE Alu 162 291 -21 32 0 0 0 chr4 144682597 144682629 -57645718 + AT_rich Low_complexity Low_complexity 1 32 0 4211 173 18 26 chr4 144682741 144683586 -57644761 - L1PB1 LINE L1 -3 6148 5311 5402 246 28 8 chr4 144683782 144685089 -57643258 - MST-int LTR MaLR -147 1504 172 25 31 0 0 chr4 144685217 144685249 -57643098 + AT_rich Low_complexity Low_complexity 1 32 0 386 244 352 0 chr4 144685330 144685523 -57642824 - MIR SINE MIR 0 262 2 373 129 15 45 chr4 144685547 144685679 -57642668 + (TA)n Simple_repeat Simple_repeat 1 128 0 21 0 0 0 chr4 144685687 144685708 -57642639 + AT_rich Low_complexity Low_complexity 1 21 0 550 141 0 0 chr4 144686348 144686433 -57641914 + LTR26 LTR ERV1 519 603 0 294 384 7 14 chr4 144686457 144686595 -57641752 + HUERS-P1 LTR ERV1 24 160 -6103 747 255 207 52 chr4 144687673 144688171 -57640176 - MLT1G1 LTR MaLR 0 595 21 1006 188 216 16 chr4 144689105 144689350 -57638997 - AluJb SINE Alu -8 294 1 501 256 73 24 chr4 144689353 144689517 -57638830 - MIR SINE MIR -59 203 32 966 333 27 46 chr4 144690080 144690518 -57637829 - LTR16A LTR ERVL -5 445 16 1822 129 43 0 chr4 144691133 144691411 -57636936 - AluSx SINE Alu -21 291 2 21 0 0 0 chr4 144692050 144692071 -57636276 + AT_rich Low_complexity Low_complexity 1 21 0 208 324 44 0 chr4 144694654 144694722 -57633625 + L2 LINE L2 2987 3057 -215 181 304 70 43 chr4 144695264 144695379 -57632968 - MIR SINE MIR -142 120 3 33 43 0 0 chr4 144695392 144695439 -57632908 + AT_rich Low_complexity Low_complexity 1 47 0 359 280 173 19 chr4 144696345 144696559 -57631788 + MIR SINE MIR 15 261 -1 33 0 0 0 chr4 144696850 144696883 -57631464 + AT_rich Low_complexity Low_complexity 1 33 0 2235 164 38 28 chr4 144698111 144698580 -57629767 + L1MA8 LINE L1 5815 6288 -3 24 67 0 0 chr4 144698675 144698720 -57629627 + AT_rich Low_complexity Low_complexity 1 45 0 1399 253 157 34 chr4 144698869 144699517 -57628830 - MER50 LTR ERV1 0 734 7 27 0 0 0 chr4 144700635 144700662 -57627685 + AT_rich Low_complexity Low_complexity 1 27 0 28 71 0 0 chr4 144700743 144700799 -57627548 + AT_rich Low_complexity Low_complexity 1 56 0 1250 100 0 0 chr4 144701298 144701478 -57626869 - AluY SINE Alu -1 310 131 29 0 0 0 chr4 144701495 144701524 -57626823 + AT_rich Low_complexity Low_complexity 1 29 0 368 189 69 82 chr4 144702608 144702767 -57625580 + MER51D LTR ERV1 500 656 -1 225 255 99 42 chr4 144702847 144703059 -57625288 + L1MDa LINE L1 1541 1764 -4776 1447 196 61 99 chr4 144703526 144704263 -57624084 + LTR28 LTR ERV1 1 677 -149 223 24 122 0 chr4 144704745 144704786 -57623561 + (TATAA)n Simple_repeat Simple_repeat 1 46 0 315 0 0 0 chr4 144705599 144705634 -57622713 + (TA)n Simple_repeat Simple_repeat 2 36 0 481 321 22 76 chr4 144705688 144705912 -57622435 - MIR SINE MIR -27 235 24 348 154 0 0 chr4 144706207 144706272 -57622075 + Alu SINE Alu 236 300 -1 182 204 0 20 chr4 144706514 144706563 -57621784 + (CATATA)n Simple_repeat Simple_repeat 4 51 0 351 262 24 86 chr4 144706569 144706779 -57621568 - MER52A LTR ERV1 -3 1752 1556 * 424 291 54 95 chr4 144706754 144706995 -57621352 - MER52A LTR ERV1 -303 1452 1222 326 215 0 38 chr4 144707255 144707334 -57621013 - MER52A LTR ERV1 -398 1357 1282 * 854 214 119 66 chr4 144707304 144707829 -57620518 - MER52A LTR ERV1 -396 1359 663 2160 86 0 20 chr4 144707978 144708308 -57620039 - AluY SINE Alu 0 311 1 256 194 0 56 chr4 144708478 144708550 -57619797 - L1ME4a LINE L1 0 6121 6054 1124 250 221 18 chr4 144708958 144709510 -57618837 + LTR50 LTR ERVL 1 664 -131 247 354 10 0 chr4 144710205 144710301 -57618046 - L2 LINE L2 -944 2370 2274 216 0 0 0 chr4 144711295 144711319 -57617028 + (CA)n Simple_repeat Simple_repeat 2 25 0 2242 101 7 0 chr4 144711441 144711738 -57616609 - AluSq SINE Alu -12 301 3 1694 145 21 49 chr4 144711937 144712461 -57615886 - L1M2 LINE L1 -743 5403 4979 853 162 0 0 chr4 144712446 144712588 -57615759 + L1MA8 LINE L1 5459 5600 -700 * 3169 163 53 0 chr4 144712590 144713196 -57615151 + L1MA8 LINE L1 5651 6288 -3 29 0 0 0 chr4 144713383 144713412 -57614935 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 144713832 144713853 -57614494 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 144714187 144714209 -57614138 + AT_rich Low_complexity Low_complexity 1 22 0 426 220 0 11 chr4 144714842 144714933 -57613414 + MLT1G1 LTR MaLR 57 146 -508 22 56 0 0 chr4 144716909 144716945 -57611402 + AT_rich Low_complexity Low_complexity 1 36 0 291 54 0 0 chr4 144717084 144717121 -57611226 + (TG)n Simple_repeat Simple_repeat 1 37 0 1334 147 9 0 chr4 144717267 144717478 -57610869 + AluSg/x SINE Alu 92 304 -8 249 359 26 0 chr4 144719284 144719362 -57608985 + L2 LINE L2 3141 3220 -52 480 302 67 60 chr4 144719584 144719899 -57608448 - ERVL LTR ERVL -3315 2449 2133 1501 190 21 70 chr4 144719952 144720325 -57608022 + MLT1A1 LTR MaLR 1 355 -10 240 229 0 0 chr4 144720327 144720375 -57607972 + MLT1A1 LTR MaLR 327 374 0 748 299 66 42 chr4 144720397 144720731 -57607616 + MLT1G1 LTR MaLR 251 592 -3 397 289 8 23 chr4 144721639 144721767 -57606580 - MLT1E LTR MaLR -1 637 467 619 280 77 77 chr4 144721768 144722093 -57606254 - MLT1E LTR MaLR -266 327 3 209 268 0 0 chr4 144722116 144722157 -57606190 + L2 LINE L2 3182 3222 -91 207 241 19 0 chr4 144722869 144722923 -57605424 + (TA)n Simple_repeat Simple_repeat 1 55 0 258 32 0 0 chr4 144723733 144723764 -57604583 + (TG)n Simple_repeat Simple_repeat 2 32 0 27 49 0 0 chr4 144723783 144723824 -57604523 + AT_rich Low_complexity Low_complexity 1 41 0 1373 203 108 6 chr4 144724043 144724359 -57603988 + MER7A DNA MER2_type 1 346 0 694 257 100 44 chr4 144725212 144725531 -57602816 - MER46C DNA MER2_type 0 338 2 314 313 58 53 chr4 144725532 144725775 -57602572 - L1MC4a LINE L1 -1902 5906 5663 301 314 79 0 chr4 144726060 144726200 -57602147 + L1ME3A LINE L1 6020 6170 0 29 94 0 0 chr4 144726244 144726329 -57602018 + AT_rich Low_complexity Low_complexity 1 85 0 24 0 0 0 chr4 144728216 144728240 -57600107 + AT_rich Low_complexity Low_complexity 1 24 0 1576 266 48 18 chr4 144728312 144728815 -57599532 + LTR40a LTR ERVL 1 518 -1 29 47 0 0 chr4 144730228 144730271 -57598076 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr4 144730481 144730513 -57597834 + AT_rich Low_complexity Low_complexity 1 32 0 1747 224 36 14 chr4 144730638 144731054 -57597293 - MSTB LTR MaLR 0 426 2 25 65 0 0 chr4 144731703 144731749 -57596598 + AT_rich Low_complexity Low_complexity 1 46 0 347 368 62 22 chr4 144731816 144732088 -57596259 - L1MC4a LINE L1 -490 5631 5349 249 318 45 0 chr4 144733256 144733322 -57595025 + MIR SINE MIR 5 73 -189 26 30 0 0 chr4 144735667 144735700 -57592647 + AT_rich Low_complexity Low_complexity 1 33 0 1149 197 17 8 chr4 144735701 144735935 -57592412 - AluJo SINE Alu -19 293 58 22 0 0 0 chr4 144736622 144736644 -57591703 + AT_rich Low_complexity Low_complexity 1 22 0 38 51 0 0 chr4 144737748 144737807 -57590540 + AT_rich Low_complexity Low_complexity 1 59 0 1399 57 11 0 chr4 144737862 144738039 -57590308 + L1PA5 LINE L1 5969 6147 -7 239 79 26 0 chr4 144738178 144738216 -57590131 + (CA)n Simple_repeat Simple_repeat 1 39 0 24 0 0 0 chr4 144738229 144738253 -57590094 + AT_rich Low_complexity Low_complexity 1 24 0 600 238 31 0 chr4 144738323 144738483 -57589864 - AluSg/x SINE Alu 0 312 148 229 266 0 16 chr4 144738492 144738556 -57589791 + GA-rich Low_complexity Low_complexity 3 65 0 1386 107 39 0 chr4 144738662 144738868 -57589479 - AluSq SINE Alu -99 214 1 396 0 0 0 chr4 144739069 144739113 -57589234 + (CA)n Simple_repeat Simple_repeat 2 45 0 1597 251 55 14 chr4 144739129 144739551 -57588796 + MER70B LTR ERVL 3 441 -137 22 88 0 0 chr4 144740410 144740467 -57587880 + AT_rich Low_complexity Low_complexity 1 57 0 22 70 0 0 chr4 144740955 144740998 -57587349 + AT_rich Low_complexity Low_complexity 1 43 0 2119 93 14 0 chr4 144741595 144741885 -57586462 + AluY SINE Alu 1 294 -17 230 290 0 0 chr4 144741907 144741969 -57586378 + (CA)n Simple_repeat Simple_repeat 1 62 0 238 314 137 48 chr4 144742333 144742457 -57585890 - L2 LINE L2 -15 3257 3123 200 245 20 0 chr4 144743367 144743416 -57584931 - MIR3 SINE MIR -9 199 150 846 217 35 44 chr4 144743552 144743778 -57584569 + MER58A DNA MER1_type 1 224 0 542 348 89 34 chr4 144743890 144744361 -57583986 - L3 LINE CR1 -1 1576 1080 22 0 0 0 chr4 144744361 144744383 -57583964 + AT_rich Low_complexity Low_complexity 1 22 0 2121 112 7 7 chr4 144747089 144747392 -57580955 - AluY SINE Alu 0 311 9 24 0 0 0 chr4 144748102 144748126 -57580221 + AT_rich Low_complexity Low_complexity 1 24 0 34 79 0 0 chr4 144749988 144750064 -57578283 + AT_rich Low_complexity Low_complexity 1 76 0 2003 139 52 27 chr4 144750867 144751233 -57577114 + THE1C LTR MaLR 1 375 0 2624 123 23 50 chr4 144751790 144752268 -57576079 + MER4C LTR ERV1 1 465 0 2146 160 11 6 chr4 144752693 144753055 -57575292 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr4 144753274 144753295 -57575052 + AT_rich Low_complexity Low_complexity 1 21 0 224 286 197 28 chr4 144754533 144754711 -57573636 - MIR SINE MIR -21 241 34 267 372 85 32 chr4 144757185 144757526 -57570821 + L2 LINE L2 1961 2319 -995 3398 168 15 9 chr4 144758364 144759014 -57569333 - L1PA15-16 LINE L1 -4072 2777 2124 766 211 0 0 chr4 144758984 144759136 -57569211 - L1P LINE L1 -2250 4599 4448 * 4794 226 15 39 chr4 144759129 144759404 -57568943 + L1 LINE L1 3812 4092 -2054 1788 141 3 54 chr4 144759404 144759728 -57568619 + AluSq SINE Alu 1 309 0 4794 226 15 39 chr4 144759728 144760838 -57567509 + L1 LINE L1 4092 5166 -980 421 70 0 28 chr4 144760838 144760922 -57567425 + L1 LINE L1 5239 5320 -826 1774 165 7 3 chr4 144761031 144761340 -57567007 + AluSx SINE Alu 1 310 -2 21 36 0 0 chr4 144761388 144761416 -57566931 + AT_rich Low_complexity Low_complexity 1 28 0 569 352 34 13 chr4 144761456 144761754 -57566593 - MLT1I LTR MaLR -46 363 60 480 360 83 42 chr4 144761797 144762359 -57565988 - L2 LINE L2 -142 3171 2579 252 0 0 0 chr4 144762899 144762927 -57565420 + (TTA)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr4 144764259 144764281 -57564066 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 144764323 144764343 -57564004 + (TTAAA)n Simple_repeat Simple_repeat 2 21 0 248 213 0 33 chr4 144764727 144764788 -57563559 + L1MC4 LINE L1 6640 6698 -1344 1238 186 154 26 chr4 144765133 144765265 -57563082 + MER2 DNA MER2_type 1 115 -230 1581 206 42 3 chr4 144765265 144765595 -57562752 - MER2 DNA MER2_type 0 344 2 1238 186 154 26 chr4 144765595 144765768 -57562579 + MER2 DNA MER2_type 115 345 0 234 178 22 0 chr4 144765773 144765818 -57562529 - MIR SINE MIR -71 191 146 419 267 142 0 chr4 144767156 144767276 -57561071 - L2 LINE L2 -4 3268 3132 336 364 31 31 chr4 144767380 144767575 -57560772 - L2 LINE L2 -576 2738 2544 754 182 27 77 chr4 144767786 144767881 -57560466 - L1MA9 LINE L1 0 6312 6214 5597 63 42 13 chr4 144767881 144768639 -57559708 + LTR17 LTR ERV1 1 780 0 754 182 27 77 chr4 144768639 144768763 -57559584 - L1MA9 LINE L1 -98 6214 6104 192 400 14 0 chr4 144768872 144768942 -57559405 - L2 LINE L2 -7 3265 3195 2092 140 3 0 chr4 144769119 144769427 -57558920 + AluSx SINE Alu 2 310 -2 262 351 93 35 chr4 144769616 144769992 -57558355 - L2 LINE L2 -449 2865 2468 1903 205 69 13 chr4 144770067 144770545 -57557802 - LTR22 LTR ERVK -4 505 1 1355 188 126 9 chr4 144770701 144771026 -57557321 + MLT1A1 LTR MaLR 1 363 -2 1313 201 81 39 chr4 144771943 144772302 -57556045 + MLT1A2 LTR MaLR 1 374 0 424 335 62 8 chr4 144773524 144773781 -57554566 - L1M4 LINE L1 -837 5309 5039 1417 326 57 37 chr4 144774927 144775713 -57552634 - L2 LINE L2 -1181 2133 1332 281 281 24 0 chr4 144776156 144776238 -57552109 + L2 LINE L2 3230 3313 0 24 32 0 0 chr4 144777101 144777132 -57551215 + AT_rich Low_complexity Low_complexity 1 31 0 3597 91 2 6 chr4 144777829 144778333 -57550014 - L1PA7 LINE L1 -1 6153 5652 2012 179 11 117 chr4 144778953 144779309 -57549038 - L1MA5 LINE L1 -473 5827 5435 295 132 10 0 chr4 144779309 144779357 -57548990 - AluSg/x SINE Alu -134 168 129 2012 179 11 117 chr4 144779357 144779373 -57548974 - L1MA5 LINE L1 -865 5435 5419 267 31 0 0 chr4 144779373 144779405 -57548942 + (TTA)n Simple_repeat Simple_repeat 2 33 0 478 17 0 0 chr4 144779405 144779464 -57548883 - L1PA2 LINE L1 -8 6147 6089 2012 179 11 117 chr4 144779464 144779646 -57548701 - L1MA5 LINE L1 -879 5421 5284 2352 86 10 0 chr4 144779734 144780035 -57548312 - AluY SINE Alu -7 304 1 5603 199 46 11 chr4 144780035 144781353 -57546994 - L1M4 LINE L1 -1115 5031 3668 * 12370 246 43 51 chr4 144781341 144781353 -57546994 - L1PA13 LINE L1 -818 5979 5968 2592 161 14 0 chr4 144781353 144781799 -57546548 - L1PA15 LINE L1 0 6165 5714 12370 246 43 51 chr4 144781799 144787786 -57540561 - L1PA13 LINE L1 -829 5968 2 1174 259 45 2 chr4 144787793 144788202 -57540145 - L1 LINE L1 -2478 3668 3204 189 235 25 12 chr4 144788360 144788441 -57539906 + (TA)n Simple_repeat Simple_repeat 2 83 0 220 143 36 18 chr4 144789343 144789399 -57538948 + (TATG)n Simple_repeat Simple_repeat 2 58 0 22 70 0 0 chr4 144789407 144789450 -57538897 + AT_rich Low_complexity Low_complexity 1 43 0 208 121 0 0 chr4 144789869 144789902 -57538445 + (TC)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr4 144790022 144790043 -57538304 + AT_rich Low_complexity Low_complexity 1 21 0 939 127 0 0 chr4 144791166 144791333 -57537014 - AluSx SINE Alu 0 313 147 2959 283 18 28 chr4 144791478 144792687 -57535660 + L1PA13 LINE L1 1489 2721 -4076 1085 93 0 0 chr4 144792907 144793046 -57535301 - AluSx SINE Alu -173 139 1 273 29 0 0 chr4 144793046 144793080 -57535267 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 237 35 0 0 chr4 144793449 144793478 -57534869 - MLT1C LTR MaLR -430 37 9 443 281 61 20 chr4 144793487 144793683 -57534664 - MLT1C-int LTR MaLR -1 1734 1531 * 2367 252 30 60 chr4 144793662 144794527 -57533820 - MLT1C-int LTR MaLR -532 839 1 820 277 58 71 chr4 144794527 144794992 -57533355 - MLT1C LTR MaLR 0 467 9 201 39 0 0 chr4 144795084 144795110 -57533237 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 372 22 0 0 chr4 144795526 144795571 -57532776 + (CA)n Simple_repeat Simple_repeat 1 45 0 331 370 42 0 chr4 144795667 144795786 -57532561 - MIR3 SINE MIR -23 185 62 504 213 82 0 chr4 144796538 144796660 -57531687 - MER20 DNA MER1_type 0 219 88 468 217 85 9 chr4 144796699 144796805 -57531542 - MER20 DNA MER1_type -105 114 1 252 0 0 0 chr4 144796897 144796925 -57531422 + (TA)n Simple_repeat Simple_repeat 2 29 0 294 274 41 23 chr4 144796983 144797111 -57531236 + MIR SINE MIR 28 152 -63 24 32 0 0 chr4 144799146 144799177 -57529170 + AT_rich Low_complexity Low_complexity 1 31 0 182 414 75 0 chr4 144799596 144799729 -57528618 - MIR3 SINE MIR -28 180 38 1400 195 62 62 chr4 144799813 144800203 -57528144 + MLT1B LTR MaLR 1 390 0 26 30 0 0 chr4 144800512 144800545 -57527802 + AT_rich Low_complexity Low_complexity 1 33 0 185 349 0 0 chr4 144800777 144800843 -57527504 + MIR SINE MIR 76 141 -121 1573 190 58 25 chr4 144804685 144805048 -57523299 + THE1C LTR MaLR 1 375 0 6285 171 13 44 chr4 144805050 144806274 -57522073 + THE1C-int LTR MaLR 3 1188 -392 3800 216 71 10 chr4 144806759 144807721 -57520626 + L1 LINE L1 3474 4493 -1653 * 12382 183 61 18 chr4 144807719 144810156 -57518191 + L1M1 LINE L1 17 2558 -5007 1934 217 64 4 chr4 144810128 144810579 -57517768 + L1MA7 LINE L1 1 478 -6385 * 4697 105 29 16 chr4 144810607 144811338 -57517009 + L1MA1 LINE L1 5563 6302 0 50 0 0 0 chr4 144811338 144811388 -57516959 + AT_rich Low_complexity Low_complexity 1 50 0 2358 78 0 0 chr4 144811391 144811686 -57516661 + AluY SINE Alu 5 299 -12 2209 225 42 9 chr4 144811687 144812211 -57516136 + L1MA7 LINE L1 5200 5740 -1122 1387 206 21 7 chr4 144812211 144812498 -57515849 + AluJb SINE Alu 1 291 -21 1014 198 0 16 chr4 144812520 144812702 -57515645 + FRAM SINE Alu 1 171 -5 3627 178 32 17 chr4 144812733 144813629 -57514718 + L1MA7 LINE L1 5814 6718 -289 26 0 0 0 chr4 144814045 144814071 -57514276 + AT_rich Low_complexity Low_complexity 1 26 0 895 276 128 44 chr4 144817416 144817966 -57510381 - L1ME2 LINE L1 -9 6155 5534 2043 128 3 0 chr4 144817966 144818262 -57510085 - AluSq SINE Alu -16 297 1 895 276 128 44 chr4 144818262 144818397 -57509950 - L1ME2 LINE L1 -630 5534 5412 21 36 0 0 chr4 144818450 144818478 -57509869 + AT_rich Low_complexity Low_complexity 1 28 0 1065 245 157 28 chr4 144818522 144819126 -57509221 - L1ME2 LINE L1 -873 5273 4592 1288 231 21 35 chr4 144821141 144821565 -57506782 - L1M4 LINE L1 -1000 5146 4729 1961 72 45 4 chr4 144821684 144821949 -57506398 + AluY SINE Alu 1 276 -35 2947 130 24 2 chr4 144821949 144822403 -57505944 + L1PA8 LINE L1 468 931 -5530 * 7823 119 18 0 chr4 144822401 144823605 -57504742 + L1PA8 LINE L1 3335 4560 -1901 7293 109 2 2 chr4 144823606 144825475 -57502872 + L1PA8 LINE L1 4607 6476 -11 21 36 0 0 chr4 144825699 144825727 -57502620 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 144825745 144825767 -57502580 + AT_rich Low_complexity Low_complexity 1 22 0 182 391 113 15 chr4 144826203 144826264 -57502083 + L2 LINE L2 3122 3176 -96 1908 216 81 0 chr4 144826264 144826658 -57501689 + MSTB LTR MaLR 1 426 0 182 391 113 15 chr4 144826658 144826729 -57501618 + L2 LINE L2 3176 3267 -5 771 161 7 27 chr4 144826785 144826934 -57501413 - L1PA16 LINE L1 -10 6156 6011 1140 209 52 0 chr4 144826934 144827183 -57501164 + L1P LINE L1 3638 3899 -2247 578 358 69 37 chr4 144828511 144829003 -57499344 + L1PA13 LINE L1 80 587 -6200 250 404 13 0 chr4 144829046 144829197 -57499150 + L1PA13 LINE L1 1364 1516 -5271 5781 256 34 27 chr4 144829982 144832844 -57495503 + L1PA13 LINE L1 1371 4346 -2451 27 49 0 0 chr4 144832844 144832885 -57495462 + AT_rich Low_complexity Low_complexity 1 41 0 309 306 136 62 chr4 144833018 144833423 -57494924 - L1M2 LINE L1 -5397 1452 1018 938 235 23 38 chr4 144833670 144834015 -57494332 + L1 LINE L1 4395 4734 -2063 647 117 0 0 chr4 144834021 144834115 -57494232 + AluS SINE Alu 5 98 -214 240 172 0 17 chr4 144834127 144834185 -57494162 + L1PA16 LINE L1 5770 5826 -477 2130 131 0 3 chr4 144834192 144834505 -57493842 + AluSq SINE Alu 1 312 -1 1578 239 0 13 chr4 144834510 144834890 -57493457 + L1 LINE L1 4073 4447 -1699 1370 189 76 28 chr4 144834859 144835213 -57493134 + L1PA16 LINE L1 5796 6166 0 * 24 32 0 0 chr4 144835698 144835729 -57492618 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr4 144836493 144836535 -57491812 + AT_rich Low_complexity Low_complexity 1 42 0 358 255 7 7 chr4 144837034 144837183 -57491164 + CT-rich Low_complexity Low_complexity 2 150 0 26 30 0 0 chr4 144837482 144837515 -57490832 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr4 144838272 144838293 -57490054 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr4 144838362 144838391 -57489956 + AT_rich Low_complexity Low_complexity 1 29 0 1139 283 76 24 chr4 144838502 144838961 -57489386 + MLT1D LTR MaLR 23 505 0 22 0 0 0 chr4 144839071 144839093 -57489254 + AT_rich Low_complexity Low_complexity 1 22 0 525 321 52 30 chr4 144839226 144839593 -57488754 + L1MEd LINE L1 881 1255 -4864 590 297 64 21 chr4 144839934 144840217 -57488130 + L1MEc LINE L1 100 394 -6002 2055 268 81 45 chr4 144840245 144841362 -57486985 + L1MEc LINE L1 507 1663 -4733 245 229 0 0 chr4 144841467 144841528 -57486819 - L1ME3 LINE L1 -8 6154 6094 235 172 20 30 chr4 144841609 144841708 -57486639 + (TA)n Simple_repeat Simple_repeat 1 98 0 468 333 18 0 chr4 144841723 144841894 -57486453 - L1ME3 LINE L1 -102 6060 5887 363 304 69 75 chr4 144841922 144842359 -57485988 - L1ME3 LINE L1 -218 5944 5511 308 158 13 0 chr4 144842400 144842476 -57485871 + GA-rich Low_complexity Low_complexity 2 78 0 2188 170 5 2 chr4 144842830 144843230 -57485117 + L1PA15 LINE L1 5765 6165 0 26 0 0 0 chr4 144843579 144843605 -57484742 + AT_rich Low_complexity Low_complexity 1 26 0 745 244 12 0 chr4 144843605 144843769 -57484578 - AluJb SINE Alu -17 295 130 212 0 36 0 chr4 144847526 144847554 -57480793 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 199 348 150 27 chr4 144848361 144848431 -57479916 - L2 LINE L2 -3035 279 219 333 0 0 0 chr4 144848431 144848468 -57479879 + (TG)n Simple_repeat Simple_repeat 1 37 0 199 348 150 27 chr4 144848468 144848584 -57479763 - L2 LINE L2 -3095 219 70 978 191 64 124 chr4 144849177 144849565 -57478782 + MLT1A1 LTR MaLR 1 365 0 578 203 23 15 chr4 144849933 144850066 -57478281 + L1MC2 LINE L1 161 294 -6270 656 128 191 35 chr4 144850125 144850243 -57478104 + L1MC2 LINE L1 810 955 -5090 4127 120 21 2 chr4 144850243 144850875 -57477472 - LTR9B LTR ERV1 0 644 1 656 128 191 35 chr4 144850875 144850897 -57477450 + L1MC2 LINE L1 955 972 -5073 1856 190 147 38 chr4 144850903 144851435 -57476912 - LTR49 LTR ERV1 -5 590 1 2361 240 126 13 chr4 144851439 144852565 -57475782 + L1MC2 LINE L1 981 2422 -4323 1872 246 23 19 chr4 144852594 144853162 -57475185 + L1MC2 LINE L1 3746 4315 -2249 3069 133 97 13 chr4 144853162 144853696 -57474651 + LTR12 LTR ERV1 2 580 -134 4216 225 61 24 chr4 144853706 144856050 -57472297 + L1MC2 LINE L1 4332 6760 -2 224 239 64 0 chr4 144856944 144857053 -57471294 + (TTTAA)n Simple_repeat Simple_repeat 3 118 0 28 0 0 0 chr4 144857923 144857951 -57470396 + AT_rich Low_complexity Low_complexity 1 28 0 2386 71 0 10 chr4 144858444 144858753 -57469594 + AluY SINE Alu 3 308 -3 868 300 74 44 chr4 144858833 144859494 -57468853 - L2 LINE L2 0 3313 2626 649 335 72 29 chr4 144859501 144859847 -57468500 - MLT1I LTR MaLR -2 407 47 1028 266 111 19 chr4 144859868 144860282 -57468065 - L2 LINE L2 -694 2620 2169 3135 181 3 2 chr4 144860712 144861286 -57467061 - L1PB4 LINE L1 -5 6151 5577 27 0 0 0 chr4 144861413 144861440 -57466907 + AT_rich Low_complexity Low_complexity 1 27 0 2228 122 0 0 chr4 144861458 144861754 -57466593 - AluSx SINE Alu -16 296 1 368 196 29 29 chr4 144861988 144862000 -57466347 - ERVL LTR ERVL -3784 1980 1969 1990 125 0 33 chr4 144862000 144862303 -57466044 - AluSq SINE Alu -20 293 1 368 196 29 29 chr4 144862303 144862392 -57465955 - ERVL LTR ERVL -3794 1970 1879 186 43 0 0 chr4 144862636 144862659 -57465688 + (T)n Simple_repeat Simple_repeat 1 23 0 42977 28 21 1 chr4 144862659 144868688 -57459659 - L1HS LINE L1 0 6155 3 701 273 99 53 chr4 144870410 144870784 -57457563 - MLT2C1 LTR ERVL -4 393 3 656 193 7 7 chr4 144870784 144870919 -57457428 - ERVL-C1 LTR ERVL -6 5758 5624 830 214 13 0 chr4 144870922 144871076 -57457271 + ERVL LTR ERVL 4867 5022 -742 7279 215 69 41 chr4 144871076 144873997 -57454350 - ERVL-C1 LTR ERVL -142 5622 2490 1898 274 2 0 chr4 144873984 144874422 -57453925 - ERVL-C1 LTR ERVL -3604 2160 1722 * 1565 174 0 22 chr4 144874658 144874933 -57453414 + AluJb SINE Alu 1 269 -43 222 37 0 0 chr4 144874941 144874968 -57453379 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2013 289 26 5 chr4 144874968 144875540 -57452807 - ERVL-C1 LTR ERVL -4069 1695 1112 1896 269 94 12 chr4 144875546 144876123 -57452224 - ERVL-C1 LTR ERVL -5139 625 2 647 258 37 55 chr4 144876124 144876395 -57451952 - MLT2C1 LTR ERVL 0 397 132 693 143 0 0 chr4 144876401 144876506 -57451841 - AluSq/x SINE Alu -208 105 1 282 414 66 0 chr4 144876775 144876973 -57451374 + MIR SINE MIR 2 212 -50 2151 92 0 3 chr4 144877583 144877894 -57450453 + AluY SINE Alu 1 310 0 25 90 0 0 chr4 144877925 144877992 -57450355 + AT_rich Low_complexity Low_complexity 1 67 0 914 273 106 47 chr4 144878100 144878591 -57449756 + MLT2B1 LTR ERVL 1 520 0 6513 230 55 12 chr4 144878592 144879223 -57449124 + ERVL LTR ERVL 2 604 -5160 6731 70 22 3 chr4 144879223 144880342 -57448005 - L1PA6 LINE L1 -2 6152 5028 6513 230 55 12 chr4 144880342 144881716 -57446631 + ERVL LTR ERVL 604 2143 -3621 428 236 13 1 chr4 144881717 144881866 -57446481 + ERVL LTR ERVL 2419 2589 -3175 1473 216 20 7 chr4 144881877 144882178 -57446169 - MER7A DNA MER2_type -1 345 43 375 278 0 0 chr4 144882204 144882294 -57446053 + L1MC4 LINE L1 6614 6703 -1339 515 221 73 29 chr4 144882334 144882470 -57445877 + ERVL LTR ERVL 2590 2731 -3033 1290 176 18 48 chr4 144882527 144882799 -57445548 + MER21A LTR ERV1 1 264 -667 2032 229 75 2 chr4 144882804 144883228 -57445119 + MER21A LTR ERV1 376 830 -101 3170 153 4 0 chr4 144884968 144885477 -57442870 - MER75 DNA T2_type 0 514 4 2037 201 10 0 chr4 144886179 144886571 -57441776 + MER57A LTR ERV1 8 403 0 1049 158 17 11 chr4 144886571 144886748 -57441599 + MER57A-int LTR ERV1 1 178 -7359 1241 149 110 4 chr4 144886764 144886992 -57441355 - MER57-int LTR ERV1 -640 6897 6646 1393 245 123 42 chr4 144887904 144888385 -57439962 - MLT2B1 LTR ERVL 0 520 1 15847 184 119 15 chr4 144888503 144890340 -57438007 + L1M1 LINE L1 9 1653 -5912 1765 170 3 0 chr4 144890340 144890676 -57437671 + AluSq SINE Alu 1 337 0 15847 184 119 15 chr4 144890676 144892563 -57435784 + L1M1 LINE L1 1653 4109 -3456 676 100 0 0 chr4 144892565 144892655 -57435692 + AluSg/x SINE Alu 200 289 -23 2502 155 34 13 chr4 144892667 144892990 -57435357 + L1MA4A LINE L1 5816 6154 -149 603 0 0 0 chr4 144892990 144893057 -57435290 + (AATAG)n Simple_repeat Simple_repeat 2 68 0 2502 155 34 13 chr4 144893057 144893204 -57435143 + L1MA4A LINE L1 6154 6296 -7 1080 209 84 4 chr4 144894297 144894536 -57433811 - Tigger3(Golem) DNA MER2_type -1 3028 2771 508 184 11 0 chr4 144894532 144894619 -57433728 - Tigger3(Golem) DNA MER2_type -2886 143 56 * 497 297 83 40 chr4 144896696 144896715 -57431632 + L1PA16 LINE L1 10 27 -7554 2897 171 12 62 chr4 144896715 144897359 -57430988 - LTR9 LTR ERV1 0 612 1 497 297 83 40 chr4 144897359 144897666 -57430681 + L1PA16 LINE L1 27 350 -7231 2759 228 21 86 chr4 144898570 144899054 -57429293 + L1PA16 LINE L1 2231 2745 -4839 2178 121 0 6 chr4 144899054 144899368 -57428979 + AluSx SINE Alu 1 312 0 2759 228 21 86 chr4 144899368 144900055 -57428292 + L1PA16 LINE L1 2745 3353 -4231 * 8912 205 18 12 chr4 144900050 144903186 -57425161 + L1PA16 LINE L1 4452 7604 0 21 0 0 0 chr4 144903763 144903784 -57424563 + AT_rich Low_complexity Low_complexity 1 21 0 289 244 11 11 chr4 144903811 144903901 -57424446 + (TA)n Simple_repeat Simple_repeat 2 91 0 3051 128 38 4 chr4 144904390 144904892 -57423455 + LTR57-int LTR ERVL 303 821 -4522 788 244 12 0 chr4 144905031 144905199 -57423148 + MER87 LTR ERV1 372 541 0 11523 252 33 21 chr4 144905256 144910526 -57417821 + L1PA15 LINE L1 21 5607 -1977 4080 11 0 0 chr4 144910526 144910987 -57417360 + L1PA2 LINE L1 5690 6150 -5 11523 252 33 21 chr4 144910987 144911298 -57417049 + L1PA15 LINE L1 5607 5913 -1671 2093 53 0 8 chr4 144911298 144911562 -57416785 + AluY SINE Alu 1 262 -49 284 0 54 0 chr4 144911583 144911663 -57416684 + AluY SINE Alu 241 322 0 5451 127 17 3 chr4 144911663 144913348 -57414999 + L1PA15 LINE L1 5907 7601 -2 1211 233 14 20 chr4 144913363 144913659 -57414688 + AluJb SINE Alu 12 305 -7 204 40 0 0 chr4 144914162 144914187 -57414160 + (A)n Simple_repeat Simple_repeat 1 25 0 1650 247 102 31 chr4 144914446 144915024 -57413323 + MLT1E3 LTR MaLR 6 624 0 24 0 0 0 chr4 144915326 144915350 -57412997 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 144916047 144916075 -57412272 + AT_rich Low_complexity Low_complexity 1 28 0 231 103 0 0 chr4 144917129 144917168 -57411179 + (CA)n Simple_repeat Simple_repeat 2 40 0 2051 101 14 0 chr4 144917418 144917726 -57410621 - AluSp SINE Alu 0 316 5 33 56 0 0 chr4 144917731 144917785 -57410562 + AT_rich Low_complexity Low_complexity 1 54 0 905 280 126 19 chr4 144918064 144918542 -57409805 - L1MCc LINE L1 -5872 551 23 25 51 0 0 chr4 144918873 144918912 -57409435 + AT_rich Low_complexity Low_complexity 1 39 0 2897 143 13 11 chr4 144918987 144919524 -57408823 + L1MA4 LINE L1 5762 6299 -1 21 0 0 0 chr4 144920221 144920242 -57408105 + AT_rich Low_complexity Low_complexity 1 21 0 2206 81 0 0 chr4 144920564 144920847 -57407500 + AluY SINE Alu 1 283 -28 354 23 0 0 chr4 144920847 144920890 -57407457 + (CA)n Simple_repeat Simple_repeat 2 44 0 203 77 0 26 chr4 144920930 144920969 -57407378 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 7785 16 0 0 chr4 144920969 144922345 -57406002 - L1PA3 LINE L1 -13 6142 4767 822 81 9 0 chr4 144922458 144922569 -57405778 + AluY SINE Alu 190 301 -10 1074 129 59 11 chr4 144923204 144923390 -57404957 - L1PA16 LINE L1 -9 6157 5963 2129 121 3 3 chr4 144923603 144923893 -57404454 + AluSg SINE Alu 5 294 -16 714 243 77 83 chr4 144925878 144926203 -57402144 + MLT1D LTR MaLR 181 503 -2 24 77 0 0 chr4 144926935 144926987 -57401360 + AT_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr4 144928248 144928277 -57400070 + AT_rich Low_complexity Low_complexity 1 29 0 1573 193 17 14 chr4 144928379 144928674 -57399673 - AluJo SINE Alu -16 296 1 21 0 0 0 chr4 144928684 144928705 -57399642 + AT_rich Low_complexity Low_complexity 1 21 0 216 210 29 51 chr4 144929341 144929479 -57398868 + (TTATA)n Simple_repeat Simple_repeat 5 139 0 389 366 29 29 chr4 144929586 144929867 -57398480 + L2 LINE L2 1202 1482 -1832 15324 69 8 11 chr4 144929948 144932818 -57395529 + L1PA6 LINE L1 3269 6139 -15 189 0 0 0 chr4 144932821 144932842 -57395505 + (CA)n Simple_repeat Simple_repeat 2 22 0 285 254 15 0 chr4 144932847 144932914 -57395433 - MLT1I LTR MaLR -52 357 290 261 316 80 32 chr4 144932978 144933228 -57395119 + L2 LINE L2 1700 1961 -1353 337 94 0 0 chr4 144934268 144934321 -57394026 + L1MA9 LINE L1 6260 6312 0 2291 67 0 16 chr4 144934689 144935002 -57393345 + AluY SINE Alu 1 308 -3 22 56 0 0 chr4 144935677 144935713 -57392634 + AT_rich Low_complexity Low_complexity 1 36 0 28 48 0 0 chr4 144935821 144935863 -57392484 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr4 144936206 144936227 -57392120 + AT_rich Low_complexity Low_complexity 1 21 0 247 325 9 48 chr4 144936245 144936473 -57391874 + L1ME LINE L1 5667 5885 -236 22 0 0 0 chr4 144936474 144936496 -57391851 + AT_rich Low_complexity Low_complexity 1 22 0 202 399 30 8 chr4 144937105 144937238 -57391109 + L2 LINE L2 2918 3053 -219 277 176 12 35 chr4 144937859 144937944 -57390403 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 410 355 89 53 chr4 144938193 144938666 -57389681 + L2 LINE L2 2804 3293 -20 633 260 88 3 chr4 144939678 144939934 -57388413 - MER2 DNA MER2_type 0 345 4 3122 215 40 68 chr4 144941079 144942928 -57385419 - L1MB3 LINE L1 -8 6175 4379 553 86 5 75 chr4 144942932 144943118 -57385229 + (TATAA)n Simple_repeat Simple_repeat 1 173 0 455 101 3 80 chr4 144943173 144943564 -57384783 + (CATAT)n Simple_repeat Simple_repeat 1 360 0 2262 82 7 3 chr4 144943698 144944004 -57384343 - AluY SINE Alu -4 307 1 22 35 0 0 chr4 144944037 144944066 -57384281 + AT_rich Low_complexity Low_complexity 1 29 0 578 249 69 56 chr4 144944081 144944314 -57384033 + L1MC4 LINE L1 6855 7090 -952 1015 231 42 45 chr4 144944327 144944591 -57383756 - MSTD LTR MaLR 0 396 134 250 233 27 0 chr4 144944591 144944664 -57383683 + L1MC4 LINE L1 7967 8041 -1 24 0 0 0 chr4 144944679 144944703 -57383644 + AT_rich Low_complexity Low_complexity 1 24 0 29 47 0 0 chr4 144944799 144944842 -57383505 + AT_rich Low_complexity Low_complexity 1 43 0 288 0 0 0 chr4 144945564 144945596 -57382751 + (CA)n Simple_repeat Simple_repeat 2 33 0 1725 161 9 25 chr4 144946199 144946516 -57381831 - AluJb SINE Alu 0 312 1 327 329 121 18 chr4 144946520 144946800 -57381547 + L2 LINE L2 1991 2299 -1015 21 0 0 0 chr4 144947210 144947231 -57381116 + AT_rich Low_complexity Low_complexity 1 21 0 473 101 0 0 chr4 144947246 144947315 -57381032 - AluSp SINE Alu -14 299 231 1169 114 12 0 chr4 144947315 144947481 -57380866 - AluSp SINE Alu -143 170 3 299 272 0 54 chr4 144947741 144947833 -57380514 + L2 LINE L2 3186 3272 0 32 26 0 0 chr4 144948011 144948050 -57380297 + AT_rich Low_complexity Low_complexity 1 39 0 1925 135 21 0 chr4 144948051 144948333 -57380014 - AluSx SINE Alu -24 288 1 465 186 12 0 chr4 144949560 144949646 -57378701 + ERVL-B1 LTR ERVL 1593 1679 -4085 804 216 75 130 chr4 144949648 144950064 -57378283 - MLT1A1 LTR MaLR -1 364 3 1438 261 156 5 chr4 144950065 144950483 -57377864 + ERVL-B1 LTR ERVL 1636 2116 -3538 1800 133 0 11 chr4 144950484 144950755 -57377592 + AluJb SINE Alu 28 295 -17 4325 179 11 5 chr4 144950768 144951510 -57376837 + ERVL-B1 LTR ERVL 3222 3967 -1797 3055 174 33 48 chr4 144951506 144952200 -57376147 + ERVL-B1 LTR ERVL 5066 5749 -15 * 1473 202 128 52 chr4 144952208 144952654 -57375693 + MLT2B1 LTR ERVL 1 480 -40 1730 201 15 3 chr4 144952682 144953025 -57375322 - MER7A DNA MER2_type -1 345 1 784 310 35 4 chr4 144953675 144953904 -57374443 + MIR SINE MIR 1 236 -26 26 30 0 0 chr4 144954491 144954524 -57373823 + AT_rich Low_complexity Low_complexity 1 33 0 1648 164 4 7 chr4 144954656 144954931 -57373416 + AluJb SINE Alu 1 274 -38 620 167 0 0 chr4 144955142 144955256 -57373091 + FRAM SINE Alu 60 173 -3 1859 138 34 0 chr4 144955272 144955563 -57372784 + AluSp SINE Alu 1 301 -12 25 31 0 0 chr4 144955659 144955691 -57372656 + AT_rich Low_complexity Low_complexity 1 32 0 731 94 9 0 chr4 144956090 144956196 -57372151 - L1PA8 LINE L1 -8 6164 6058 261 307 87 29 chr4 144956263 144956504 -57371843 - L1MEc LINE L1 -2373 3842 3588 323 301 91 58 chr4 144956999 144957570 -57370777 - L1MEc LINE L1 -4578 1818 1229 344 270 106 67 chr4 144957583 144957913 -57370434 - L1MEc LINE L1 -5228 1168 826 346 314 87 49 chr4 144957943 144958031 -57370316 - L1M4 LINE L1 -963 5183 5100 2181 113 13 0 chr4 144958031 144958331 -57370016 - AluSx SINE Alu -8 304 1 346 314 87 49 chr4 144958331 144958608 -57369739 - L1M4 LINE L1 -1046 5100 4804 1851 168 3 3 chr4 144959427 144959737 -57368610 + AluSx SINE Alu 2 311 -1 23 54 0 0 chr4 144959774 144959811 -57368536 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 144962584 144962619 -57365728 + AT_rich Low_complexity Low_complexity 1 35 0 267 349 74 29 chr4 144962891 144963066 -57365281 - MER5A DNA MER1_type -5 184 2 678 328 58 3 chr4 144963295 144963606 -57364741 + MLT1J LTR MaLR 4 331 -180 182 322 43 52 chr4 144963610 144963725 -57364622 + L2 LINE L2 3200 3313 0 7354 123 164 21 chr4 144964307 144965791 -57362556 + pTR5 LTR ERV1 742 2438 0 22 56 0 0 chr4 144966111 144966147 -57362200 + AT_rich Low_complexity Low_complexity 1 36 0 183 299 134 8 chr4 144966287 144966421 -57361926 + L2 LINE L2 1965 2115 -1199 369 296 38 23 chr4 144967243 144967375 -57360972 - MER5B DNA MER1_type -24 154 21 351 0 0 0 chr4 144968290 144968329 -57360018 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr4 144968745 144968766 -57359581 + AT_rich Low_complexity Low_complexity 1 21 0 1798 278 46 13 chr4 144969378 144970033 -57358314 - L1MB7 LINE L1 -3 6180 5520 238 271 99 88 chr4 144970076 144970257 -57358090 + MLT1J LTR MaLR 347 529 -66 322 380 32 0 chr4 144972064 144972251 -57356096 + MIR SINE MIR 70 262 0 2194 71 9 52 chr4 144972711 144973035 -57355312 - AluY SINE Alu -1 310 1 22 35 0 0 chr4 144974032 144974061 -57354286 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 144974229 144974251 -57354096 + AT_rich Low_complexity Low_complexity 1 22 0 218 277 72 24 chr4 144974275 144974358 -57353989 + L2 LINE L2 2694 2780 -534 24 0 0 0 chr4 144975381 144975405 -57352942 + AT_rich Low_complexity Low_complexity 1 24 0 216 250 19 9 chr4 144975933 144976041 -57352306 + (TA)n Simple_repeat Simple_repeat 1 109 0 1182 186 71 125 chr4 144976247 144976672 -57351675 - L1MC4a LINE L1 -1049 6759 6358 21 57 0 0 chr4 144976675 144976710 -57351637 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 144977428 144977449 -57350898 + AT_rich Low_complexity Low_complexity 1 21 0 456 84 127 0 chr4 144979402 144979473 -57348874 - MADE1 DNA Mariner 0 80 1 203 32 65 0 chr4 144979839 144979870 -57348477 + A-rich Low_complexity Low_complexity 2 34 0 1727 180 0 10 chr4 144980687 144980987 -57347360 + AluJb SINE Alu 1 297 -15 207 0 0 0 chr4 144981147 144981170 -57347177 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 183 354 24 12 chr4 144981327 144981409 -57346938 - L2 LINE L2 -4 3268 3186 21 0 0 0 chr4 144981944 144981965 -57346382 + AT_rich Low_complexity Low_complexity 1 21 0 466 316 17 6 chr4 144982684 144982858 -57345489 + MLT1H LTR MaLR 46 221 -328 1490 225 77 18 chr4 144984136 144984576 -57343771 - MLT1C LTR MaLR 0 467 2 625 209 0 0 chr4 144985137 144985247 -57343100 - FRAM SINE Alu -66 110 1 770 191 7 0 chr4 144985270 144985417 -57342930 - FRAM SINE Alu -30 146 1 33 43 0 0 chr4 144985832 144985879 -57342468 + AT_rich Low_complexity Low_complexity 1 47 0 26 0 0 0 chr4 144986064 144986090 -57342257 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr4 144987824 144987851 -57340496 + AT_rich Low_complexity Low_complexity 1 27 0 418 258 70 100 chr4 144989473 144989985 -57338362 - L1M4 LINE L1 -1801 4345 3849 32 43 0 0 chr4 144990491 144990537 -57337810 + AT_rich Low_complexity Low_complexity 1 46 0 22 56 0 0 chr4 144991271 144991307 -57337040 + AT_rich Low_complexity Low_complexity 1 36 0 426 319 76 49 chr4 144991494 144991636 -57336711 - L2 LINE L2 -5 3308 3171 180 0 0 0 chr4 144991636 144991656 -57336691 + (TG)n Simple_repeat Simple_repeat 2 21 0 426 319 76 49 chr4 144991656 144991921 -57336426 - L2 LINE L2 -142 3171 2890 1388 287 41 59 chr4 144991976 144992469 -57335878 - L2 LINE L2 -522 2792 2291 1736 132 33 11 chr4 144992469 144992742 -57335605 + AluSq SINE Alu 2 280 -33 1255 62 17 0 chr4 144992751 144992928 -57335419 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1388 287 41 59 chr4 144992928 144993082 -57335265 - L2 LINE L2 -1031 2283 2147 989 236 80 101 chr4 144993085 144993637 -57334710 + MLT1H LTR MaLR 1 540 -9 21 0 0 0 chr4 144993641 144993662 -57334685 + AT_rich Low_complexity Low_complexity 1 21 0 619 341 26 4 chr4 144993669 144993898 -57334449 - L2 LINE L2 -1187 2127 1894 24 32 0 0 chr4 144993978 144994009 -57334338 + AT_rich Low_complexity Low_complexity 1 31 0 24 77 0 0 chr4 144995864 144995916 -57332431 + AT_rich Low_complexity Low_complexity 1 52 0 309 330 76 106 chr4 144996749 144997013 -57331334 - L2 LINE L2 0 3272 3017 303 378 117 10 chr4 144997090 144997452 -57330895 + L2 LINE L2 2633 3080 -233 2079 261 101 11 chr4 144997476 144998142 -57330205 + MER21B LTR ERV1 14 739 -124 195 280 98 68 chr4 144998240 144998318 -57330029 + L2 LINE L2 3178 3263 -50 2433 144 19 25 chr4 144998318 144998749 -57329598 + MSTA LTR MaLR 1 428 0 195 280 98 68 chr4 144998749 144998802 -57329545 + L2 LINE L2 3263 3313 0 21 36 0 0 chr4 144998864 144998892 -57329455 + AT_rich Low_complexity Low_complexity 1 28 0 25 75 0 0 chr4 144999437 144999490 -57328857 + AT_rich Low_complexity Low_complexity 1 53 0 586 295 51 57 chr4 144999645 145000374 -57327973 + L1M4c LINE L1 1074 1880 -4502 1120 257 97 28 chr4 145000402 145001361 -57326986 + L1M4c LINE L1 2072 3057 -3325 25 65 0 0 chr4 145001919 145001965 -57326382 + AT_rich Low_complexity Low_complexity 1 46 0 2220 92 3 0 chr4 145002278 145002570 -57325777 + AluSp SINE Alu 1 293 -20 37 52 0 0 chr4 145002570 145002628 -57325719 + AT_rich Low_complexity Low_complexity 1 58 0 336 327 67 35 chr4 145003118 145003430 -57324917 + L1ME LINE L1 5465 5786 -335 757 187 0 0 chr4 145003438 145003572 -57324775 - AluJo SINE Alu -176 136 3 26 30 0 0 chr4 145005611 145005644 -57322703 + AT_rich Low_complexity Low_complexity 1 33 0 905 290 88 12 chr4 145005975 145006303 -57322044 - MLT1G LTR MaLR -237 353 1 232 336 9 36 chr4 145006360 145006470 -57321877 - MIR3 SINE MIR -7 201 95 201 147 0 0 chr4 145006478 145006512 -57321835 + (CATA)n Simple_repeat Simple_repeat 3 36 0 34 24 0 0 chr4 145006552 145006593 -57321754 + AT_rich Low_complexity Low_complexity 1 41 0 2878 196 18 10 chr4 145006613 145007117 -57321230 + MLT2B3 LTR ERVL 8 515 -39 210 221 11 53 chr4 145007117 145007212 -57321135 + (TA)n Simple_repeat Simple_repeat 2 92 0 2147 170 10 12 chr4 145007221 145007653 -57320694 + Tigger2 DNA MER2_type 1 2718 0 524 130 11 0 chr4 145007701 145007793 -57320554 + (TAGA)n Simple_repeat Simple_repeat 2 94 0 1852 260 72 26 chr4 145008183 145008887 -57319460 + L1MEc LINE L1 391 1127 -5269 21 0 0 0 chr4 145008940 145008961 -57319386 + AT_rich Low_complexity Low_complexity 1 21 0 215 294 15 15 chr4 145009443 145009511 -57318836 + MIR SINE MIR 85 152 -56 268 211 0 0 chr4 145010846 145010903 -57317444 + MER52A LTR ERV1 2 58 -1697 4297 228 171 5 chr4 145011240 145012416 -57315931 + MER52A LTR ERV1 185 1512 -243 256 182 36 0 chr4 145012414 145012469 -57315878 + MER52C LTR ERV1 1222 1278 0 * 21 0 0 0 chr4 145012754 145012775 -57315572 + AT_rich Low_complexity Low_complexity 1 21 0 757 190 63 0 chr4 145013187 145013345 -57315002 + FAM SINE Alu 1 168 -7 24 32 0 0 chr4 145013720 145013751 -57314596 + AT_rich Low_complexity Low_complexity 1 31 0 553 113 0 0 chr4 145014091 145014171 -57314176 + MADE1 DNA Mariner 1 80 0 44 20 0 0 chr4 145014794 145014845 -57313502 + AT_rich Low_complexity Low_complexity 1 51 0 36 87 0 0 chr4 145014945 145015037 -57313310 + AT_rich Low_complexity Low_complexity 1 92 0 27 29 0 0 chr4 145015348 145015382 -57312965 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr4 145015509 145015530 -57312817 + AT_rich Low_complexity Low_complexity 1 21 0 288 316 126 47 chr4 145015532 145015747 -57312600 - MIR SINE MIR 0 262 31 732 175 91 7 chr4 145015785 145015928 -57312419 + AluSg/x SINE Alu 135 289 -21 245 73 0 24 chr4 145015991 145016032 -57312315 + (TA)n Simple_repeat Simple_repeat 2 41 0 23 78 0 0 chr4 145016083 145016134 -57312213 + AT_rich Low_complexity Low_complexity 1 51 0 2014 125 23 0 chr4 145016182 145016486 -57311861 - AluSx SINE Alu -1 311 1 748 231 16 84 chr4 145016650 145016958 -57311389 - L1ME1 LINE L1 -96 6070 5784 249 224 52 0 chr4 145016958 145017016 -57311331 + MLT1A1 LTR MaLR 19 79 -286 582 218 8 0 chr4 145017074 145017207 -57311140 - L1ME1 LINE L1 -668 5498 5365 2993 170 36 12 chr4 145017760 145018341 -57310006 - LTR49 LTR ERV1 0 595 1 3146 193 37 9 chr4 145019238 145019881 -57308466 + MER67B LTR ERV1 1 661 0 235 284 21 0 chr4 145020102 145020197 -57308150 - L1MC4 LINE L1 -1332 6710 6614 243 170 0 0 chr4 145020208 145020255 -57308092 + (TA)n Simple_repeat Simple_repeat 2 48 0 * 315 113 0 0 chr4 145020254 145020307 -57308040 + (GA)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr4 145020517 145020539 -57307808 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr4 145021246 145021267 -57307080 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 27 29 0 0 chr4 145021269 145021303 -57307044 + AT_rich Low_complexity Low_complexity 1 34 0 464 88 59 29 chr4 145021303 145021473 -57306874 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 1759 252 19 80 chr4 145021491 145022819 -57305528 + L1MA8 LINE L1 9 2517 -4520 1942 163 129 5 chr4 145022835 145023216 -57305131 + MSTA LTR MaLR 1 428 0 1200 137 12 143 chr4 145023216 145023544 -57304803 + MSTA-int LTR MaLR 2 286 -1365 3639 201 5 30 chr4 145023557 145024303 -57304044 + MSTA-int LTR MaLR 417 1144 -436 352 166 0 26 chr4 145024304 145024388 -57303959 + L1MA8 LINE L1 3801 3882 -3224 2285 117 67 8 chr4 145024399 145024758 -57303589 + MLT2A1 LTR ERVL 1 380 -64 3210 166 29 21 chr4 145024817 145025443 -57302904 + L1MA8 LINE L1 6449 7079 -172 4101 209 76 10 chr4 145026293 145027860 -57300487 + MER52A LTR ERV1 1 1755 0 21 0 0 0 chr4 145029901 145029922 -57298425 + AT_rich Low_complexity Low_complexity 1 21 0 1617 249 17 8 chr4 145030639 145030997 -57297350 + MSTD LTR MaLR 1 361 -35 205 40 0 0 chr4 145030997 145031022 -57297325 + (TTA)n Simple_repeat Simple_repeat 2 180 0 972 135 7 0 chr4 145031022 145031163 -57297184 - AluSc SINE Alu -28 281 140 371 276 87 27 chr4 145031758 145031943 -57296404 + LTR33 LTR ERVL 323 518 -3 286 327 9 9 chr4 145031955 145032065 -57296282 + L2 LINE L2 2469 2578 -736 414 329 110 21 chr4 145032252 145032470 -57295877 + L2 LINE L2 2575 2817 -497 1931 159 0 3 chr4 145032470 145032772 -57295575 + AluSx SINE Alu 1 301 -11 414 329 110 21 chr4 145032772 145032790 -57295557 + L2 LINE L2 2817 2832 -482 473 284 65 30 chr4 145033362 145033563 -57294784 - MER63A DNA MER1_type -2 208 1 6156 82 3 11 chr4 145033588 145034436 -57293911 + L1PA10 LINE L1 5327 6168 0 697 204 45 40 chr4 145034715 145034891 -57293456 + MER5B DNA MER1_type 1 177 -1 332 183 43 17 chr4 145035533 145035648 -57292699 + (TCTA)n Simple_repeat Simple_repeat 1 118 0 23 33 0 0 chr4 145035759 145035789 -57292558 + AT_rich Low_complexity Low_complexity 1 30 0 625 181 72 51 chr4 145036514 145036845 -57291502 + Zaphod DNA AcHobo 652 989 -3042 735 199 39 85 chr4 145036893 145037168 -57291179 + Zaphod DNA AcHobo 3597 3858 -173 579 254 56 22 chr4 145037168 145037369 -57290978 - MLT1C LTR MaLR -1 466 278 662 185 31 0 chr4 145037385 145037515 -57290832 - L1P LINE L1 -1134 5012 4879 717 246 0 30 chr4 145037516 145037683 -57290664 - AluJb SINE Alu -15 297 136 1140 194 21 0 chr4 145037686 145037943 -57290404 - L1 LINE L1 -1260 4886 4626 309 277 32 0 chr4 145037977 145038071 -57290276 + Zaphod DNA AcHobo 3934 4030 -1 5321 183 10 21 chr4 145038169 145040246 -57288101 - L1MA4 LINE L1 -1 6299 4246 314 102 34 0 chr4 145040342 145040401 -57287946 + T-rich Low_complexity Low_complexity 3 63 0 8107 203 55 33 chr4 145040738 145041645 -57286702 - L1MC3 LINE L1 0 7785 6899 249 33 0 0 chr4 145041645 145041675 -57286672 + (TG)n Simple_repeat Simple_repeat 2 31 0 8107 203 55 33 chr4 145041675 145041818 -57286529 - L1MC3 LINE L1 -886 6899 6761 1950 86 79 0 chr4 145041818 145042098 -57286249 + AluSg SINE Alu 1 302 -8 8107 203 55 33 chr4 145042098 145042650 -57285697 - L1MC3 LINE L1 -1024 6761 6127 2240 60 0 7 chr4 145042650 145042976 -57285371 + AluY SINE Alu 1 324 0 8107 203 55 33 chr4 145042976 145043374 -57284973 - L1MC3 LINE L1 -1658 6127 5739 22 80 0 0 chr4 145043375 145043425 -57284922 + AT_rich Low_complexity Low_complexity 1 50 0 2022 189 65 0 chr4 145044050 145044452 -57283895 + MSTC LTR MaLR 1 428 0 24 32 0 0 chr4 145045313 145045344 -57283003 + AT_rich Low_complexity Low_complexity 1 31 0 194 352 45 11 chr4 145045419 145045507 -57282840 - MIR SINE MIR -169 93 3 294 73 36 18 chr4 145047275 145047290 -57281057 - Alu SINE Alu -1 299 286 387 0 0 0 chr4 145047290 145047333 -57281014 + (TATG)n Simple_repeat Simple_repeat 2 44 0 294 73 36 18 chr4 145047333 145047372 -57280975 - Alu SINE Alu -14 286 244 2035 90 0 23 chr4 145047372 145047671 -57280676 - AluY SINE Alu -19 292 1 621 132 182 16 chr4 145047703 145047824 -57280523 - FLAM_C SINE Alu 0 143 3 540 200 0 0 chr4 145048612 145048727 -57279620 + CT-rich Low_complexity Low_complexity 4 118 0 1219 188 128 21 chr4 145048727 145049009 -57279338 - AluJb SINE Alu 0 312 1 328 266 44 35 chr4 145049171 145049284 -57279063 + MIR SINE MIR 11 124 -138 25 0 0 0 chr4 145049606 145049631 -57278716 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr4 145049877 145049913 -57278434 + AT_rich Low_complexity Low_complexity 1 36 0 236 290 16 0 chr4 145050119 145050181 -57278166 + GA-rich Low_complexity Low_complexity 3 65 0 645 181 39 0 chr4 145050716 145050843 -57277504 + AluJb SINE Alu 5 136 -176 926 220 30 5 chr4 145050843 145051043 -57277304 + AluJb SINE Alu 81 285 -27 21 0 0 0 chr4 145102326 145102347 -57226000 + AT_rich Low_complexity Low_complexity 1 21 0 411 98 0 0 chr4 145102462 145102523 -57225824 + (CA)n Simple_repeat Simple_repeat 2 62 0 238 300 0 44 chr4 145103878 145103968 -57224379 - L2 LINE L2 -49 3264 3179 275 406 11 0 chr4 145104339 145104526 -57223821 - L2 LINE L2 -583 2731 2543 197 352 102 31 chr4 145104801 145104997 -57223350 - L2 LINE L2 -2919 395 186 1849 123 50 17 chr4 145105752 145106053 -57222294 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr4 145106278 145106300 -57222047 + AT_rich Low_complexity Low_complexity 1 22 0 734 139 78 0 chr4 145107300 145107429 -57220918 + MER85 DNA T2_type 1 139 0 347 253 29 23 chr4 145108413 145108587 -57219760 + T-rich Low_complexity Low_complexity 1 175 0 1149 97 0 0 chr4 145111567 145111732 -57216615 + (TA)n Simple_repeat Simple_repeat 2 166 0 375 119 68 0 chr4 145111921 145111980 -57216367 - MER66A LTR ERV1 -146 332 270 22 21 0 62 chr4 145113653 145113701 -57214646 + AT_rich Low_complexity Low_complexity 1 45 0 400 164 78 35 chr4 145114747 145114863 -57213484 + L1MC3 LINE L1 6905 7025 -760 2225 249 42 24 chr4 145114904 145115670 -57212677 + L1MD3 LINE L1 6979 7980 -15 1349 215 85 65 chr4 145115774 145116280 -57212067 + MLT2B1 LTR ERVL 5 520 0 517 259 73 57 chr4 145116286 145116587 -57211760 + L1MC4 LINE L1 7624 7929 -113 225 287 78 35 chr4 145117210 145117325 -57211022 + LTR16C LTR ERVL 52 171 -320 228 297 39 55 chr4 145117461 145117589 -57210758 + LTR16A1 LTR ERVL 330 455 -2 297 385 69 44 chr4 145118851 145119415 -57208932 - L2 LINE L2 -574 2740 2163 1995 148 0 0 chr4 145119837 145120140 -57208207 + AluSx SINE Alu 1 303 -9 2703 187 68 50 chr4 145120198 145120472 -57207875 + L1MC3 LINE L1 6709 6977 -808 1712 164 11 4 chr4 145120472 145120808 -57207539 + AluSx SINE Alu 1 338 0 2703 187 68 50 chr4 145120808 145121199 -57207148 + L1MC3 LINE L1 6977 7387 -398 22 0 0 0 chr4 145122171 145122193 -57206154 + AT_rich Low_complexity Low_complexity 1 22 0 2673 164 8 11 chr4 145122197 145122665 -57205682 - MER67C LTR ERV1 -66 644 178 1209 216 71 22 chr4 145122667 145122785 -57205562 + AluJo SINE Alu 1 112 -200 240 35 0 0 chr4 145122785 145122814 -57205533 + (CA)n Simple_repeat Simple_repeat 2 30 0 1209 216 71 22 chr4 145122814 145122964 -57205383 + AluJo SINE Alu 112 282 -30 1898 153 85 28 chr4 145123002 145123400 -57204947 + L1MA3 LINE L1 5885 6305 0 558 172 70 8 chr4 145123420 145123548 -57204799 - MER67C LTR ERV1 -522 188 53 264 31 0 0 chr4 145123561 145123593 -57204754 - L1PA16 LINE L1 -10 6156 6125 957 187 42 6 chr4 145123614 145123833 -57204514 - L1PA16 LINE L1 -10 6158 5941 280 320 44 44 chr4 145124579 145124834 -57203513 - L1ME LINE L1 -305 5865 5610 712 215 0 0 chr4 145124915 145125045 -57203302 - FLAM_C SINE Alu -3 130 1 492 333 92 24 chr4 145125585 145126042 -57202305 - MLT1L LTR MaLR -13 602 115 245 364 100 29 chr4 145126340 145126749 -57201598 - L2 LINE L2 -840 2474 2037 28 0 0 0 chr4 145127080 145127108 -57201239 + AT_rich Low_complexity Low_complexity 1 28 0 933 322 107 20 chr4 145127760 145128219 -57200128 - REP3 LTR ERV -54 508 10 304 294 39 10 chr4 145131334 145131436 -57196911 - L2 LINE L2 0 3272 3168 300 157 0 0 chr4 145131507 145131558 -57196789 + L1PA16 LINE L1 6107 6157 -9 198 191 0 0 chr4 145132942 145132989 -57195358 + T-rich Low_complexity Low_complexity 1 47 0 1871 166 0 0 chr4 145133428 145133730 -57194617 - AluJb SINE Alu -10 302 1 23 33 0 0 chr4 145135768 145135798 -57192549 + AT_rich Low_complexity Low_complexity 1 30 0 1580 218 40 6 chr4 145137434 145137787 -57190560 + MLT1A1 LTR MaLR 1 365 0 242 364 66 16 chr4 145139190 145139311 -57189036 - MIR SINE MIR -62 146 20 341 284 88 65 chr4 145140144 145140359 -57187988 - L1ME LINE L1 -305 5816 5597 264 312 19 25 chr4 145140621 145140778 -57187569 + MIR SINE MIR 100 255 -7 436 300 71 18 chr4 145140839 145141009 -57187338 + MIR SINE MIR 80 258 -4 33 25 0 0 chr4 145141538 145141578 -57186769 + AT_rich Low_complexity Low_complexity 1 40 0 2038 107 3 13 chr4 145144254 145144552 -57183795 + AluY SINE Alu 12 306 -5 206 333 27 13 chr4 145145254 145145329 -57183018 - MER5B DNA MER1_type 0 178 103 220 387 132 15 chr4 145145581 145145785 -57182562 - MIR SINE MIR -34 228 1 1971 128 24 0 chr4 145146611 145146901 -57181446 + AluSx SINE Alu 3 299 -13 651 229 57 6 chr4 145146929 145147086 -57181261 + LTR52 LTR ERVL 1 165 -256 303 176 0 44 chr4 145147095 145147163 -57181184 + L1MC4 LINE L1 6637 6701 -1341 222 91 0 0 chr4 145147362 145147395 -57180952 + (TG)n Simple_repeat Simple_repeat 2 34 0 1986 161 46 19 chr4 145147421 145147838 -57180509 - L1MA8 LINE L1 -5 6286 5859 374 224 13 0 chr4 145148100 145148176 -57180171 - MER50 LTR ERV1 -23 711 635 208 254 0 0 chr4 145149680 145149735 -57178612 + T-rich Low_complexity Low_complexity 1 55 0 2845 42 14 3 chr4 145149739 145150093 -57178254 - L1PA3 LINE L1 0 6155 5798 485 17 0 0 chr4 145150093 145150152 -57178195 + L1PA3 LINE L1 5732 5790 -365 40 37 0 0 chr4 145150233 145150287 -57178060 + AT_rich Low_complexity Low_complexity 1 54 0 318 351 93 0 chr4 145151263 145151468 -57176879 + L2 LINE L2 2316 2539 -775 184 359 0 0 chr4 145151798 145151851 -57176496 + L2 LINE L2 3006 3058 -214 189 94 0 0 chr4 145151871 145151903 -57176444 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 184 302 0 0 chr4 145152145 145152198 -57176149 + L2 LINE L2 3261 3313 0 313 263 10 50 chr4 145152390 145152489 -57175858 + MLT1J LTR MaLR 343 437 -74 204 242 0 65 chr4 145152865 145152927 -57175420 + L2 LINE L2 3215 3272 0 813 120 8 0 chr4 145153157 145153281 -57175066 + MSTA LTR MaLR 1 125 -303 2067 162 6 6 chr4 145153281 145153620 -57174727 + MER1B DNA MER1_type 1 339 0 1372 141 87 8 chr4 145153655 145153897 -57174450 + MSTA LTR MaLR 168 428 0 2283 161 19 19 chr4 145153911 145154322 -57174025 + LTR38 LTR ERV1 1 411 -145 388 332 93 19 chr4 145155643 145155857 -57172490 + MIR SINE MIR 33 262 0 351 0 0 0 chr4 145156551 145156590 -57171757 + (CA)n Simple_repeat Simple_repeat 2 40 0 293 351 29 23 chr4 145157392 145157563 -57170784 - MLT1J LTR MaLR -258 253 82 594 324 52 25 chr4 145157798 145158122 -57170225 - LTR16A LTR ERVL -15 435 103 1796 249 94 19 chr4 145158183 145158765 -57169582 - MLT1E2 LTR MaLR 0 626 1 1922 192 111 0 chr4 145160407 145160814 -57167533 + LTR47A LTR ERVL 1 452 0 1661 171 0 34 chr4 145161216 145161634 -57166713 - AluSx SINE Alu 0 408 1 361 239 76 29 chr4 145161724 145161961 -57166386 + L1MC4 LINE L1 7610 7982 -60 21 36 0 0 chr4 145163644 145163672 -57164675 + AT_rich Low_complexity Low_complexity 1 28 0 2022 125 7 0 chr4 145164323 145164620 -57163727 - AluSp SINE Alu -14 299 1 1667 200 82 40 chr4 145164860 145165327 -57163020 + LTR45B LTR ERV1 3 525 0 186 167 0 0 chr4 145165484 145165520 -57162827 + (CATATA)n Simple_repeat Simple_repeat 3 38 0 192 200 0 0 chr4 145165574 145165614 -57162733 + (TA)n Simple_repeat Simple_repeat 2 41 0 563 323 90 58 chr4 145166704 145167507 -57160840 + L1M4 LINE L1 3194 4021 -2125 320 308 128 53 chr4 145167604 145168208 -57160139 + L1M4 LINE L1 4182 4830 -1316 476 178 0 17 chr4 145168305 145168423 -57159924 + GA-rich Low_complexity Low_complexity 3 118 0 318 335 45 11 chr4 145168426 145168605 -57159742 + L1M4 LINE L1 4965 5149 -997 662 223 58 0 chr4 145169245 145169384 -57158963 + FRAM SINE Alu 1 146 -30 20782 174 30 21 chr4 145169913 145174013 -57154334 + L1M1 LINE L1 12 4168 -3397 2710 80 131 181 chr4 145174015 145174893 -57153454 + LTR12 LTR ERV1 1 2435 -3 2273 267 35 100 chr4 145174900 145176506 -57151841 + L1M1 LINE L1 4768 6268 -1297 3774 167 12 5 chr4 145175332 145175989 -57152358 - L1P LINE L1 -2082 4064 3403 5450 129 7 3 chr4 145176611 145177461 -57150886 + L1PA13 LINE L1 5309 6161 -2 * 6927 177 23 19 chr4 145177454 145179735 -57148612 + L1MA3 LINE L1 3775 6061 -244 1474 182 6 50 chr4 145179735 145180054 -57148293 + AluJb SINE Alu 1 305 -7 6927 177 23 19 chr4 145180054 145180300 -57148047 + L1MA3 LINE L1 6061 6305 0 1022 317 88 17 chr4 145180309 145180788 -57147559 + MLT1H LTR MaLR 18 530 -19 433 262 63 31 chr4 145180886 145181077 -57147270 + MIR SINE MIR 52 248 -14 198 313 89 18 chr4 145181251 145181363 -57146984 + L2 LINE L2 3189 3308 -5 201 273 0 0 chr4 145181472 145181516 -57146831 + L2 LINE L2 3219 3262 -10 280 357 76 58 chr4 145182459 145182958 -57145389 - L2 LINE L2 -503 2811 2304 489 224 53 77 chr4 145184503 145184673 -57143674 + MIR SINE MIR 32 197 -65 379 319 75 21 chr4 145185267 145185455 -57142892 - L2 LINE L2 -339 2975 2778 23 0 0 0 chr4 145186347 145186370 -57141977 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 145186909 145186930 -57141417 + AT_rich Low_complexity Low_complexity 1 21 0 1479 62 0 0 chr4 145187362 145187540 -57140807 + AluY SINE Alu 122 299 -12 2247 101 0 7 chr4 145188302 145188609 -57139738 - AluY SINE Alu -6 305 1 364 221 158 11 chr4 145188880 145188975 -57139372 + MLT1J2 LTR MaLR 189 297 -153 22 35 0 0 chr4 145189237 145189266 -57139081 + AT_rich Low_complexity Low_complexity 1 29 0 509 279 75 25 chr4 145189577 145189778 -57138569 + LTR7 LTR ERV1 240 450 0 1305 251 58 23 chr4 145189778 145190209 -57138138 + HERVH LTR ERV1 1 446 -7267 14013 212 21 25 chr4 145190264 145196502 -57131845 + HERVH LTR ERV1 590 6588 -1125 3392 175 21 14 chr4 145196607 145197269 -57131078 + HERVH LTR ERV1 7047 7713 0 622 250 69 25 chr4 145197368 145197572 -57130775 + LTR7 LTR ERV1 238 450 0 1489 237 34 50 chr4 145198197 145198498 -57129849 - L1M4 LINE L1 -1526 4620 4331 2204 103 0 3 chr4 145198498 145198798 -57129549 + AluY SINE Alu 1 299 -12 1489 237 34 50 chr4 145198798 145199061 -57129286 - L1M4 LINE L1 -1815 4331 4065 21 36 0 0 chr4 145199724 145199752 -57128595 + AT_rich Low_complexity Low_complexity 1 28 0 322 314 72 42 chr4 145200491 145200755 -57127592 + MLT1L LTR MaLR 340 611 -4 785 197 9 84 chr4 145201767 145201980 -57126367 + L1M1 LINE L1 17 213 -7352 297 174 0 0 chr4 145201970 145202016 -57126331 + L1M1 LINE L1 479 524 -7041 * 10723 180 28 10 chr4 145202066 145203957 -57124390 + L1M1 LINE L1 526 2450 -5115 3931 255 35 14 chr4 145204003 145204971 -57123376 + Tigger3b DNA MER2_type 244 1231 0 942 258 77 26 chr4 145204982 145205148 -57123199 - L1M4 LINE L1 -1197 4949 4793 869 244 36 101 chr4 145205148 145205562 -57122785 - MLT1B LTR MaLR 0 390 4 942 258 77 26 chr4 145205562 145205848 -57122499 - L1M4 LINE L1 -1353 4793 4474 1265 274 105 30 chr4 145205928 145206555 -57121792 - L1MCc LINE L1 -4954 1469 796 1091 296 61 9 chr4 145207089 145207514 -57120833 - L1MCc LINE L1 -5947 476 30 2896 323 88 23 chr4 145207520 145208882 -57119465 - L2 LINE L2 -971 2343 893 1803 132 68 12 chr4 145208895 145209220 -57119127 - MER61A LTR ERV1 0 343 1 23478 100 28 14 chr4 145209220 145213000 -57115347 - MER61A-int LTR ERV1 0 5217 1320 2793 193 94 52 chr4 145212994 145213739 -57114608 - MER61A-int LTR ERV1 -4441 776 1 * 1532 131 90 66 chr4 145213739 145213939 -57114408 - MER61A LTR ERV1 0 343 130 2119 100 14 0 chr4 145213939 145214228 -57114119 + AluSq SINE Alu 13 305 -8 1532 131 90 66 chr4 145214228 145214362 -57113985 - MER61A LTR ERV1 -213 130 1 23 54 0 0 chr4 145214379 145214416 -57113931 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr4 145214687 145214715 -57113632 + AT_rich Low_complexity Low_complexity 1 28 0 2398 69 0 13 chr4 145215064 145215368 -57112979 - AluY SINE Alu -11 300 1 22 56 0 0 chr4 145216828 145216864 -57111483 + AT_rich Low_complexity Low_complexity 1 36 0 760 296 104 68 chr4 145217914 145218572 -57109775 - L2 LINE L2 -6 3307 2636 334 279 23 0 chr4 145218572 145218658 -57109689 - L2 LINE L2 -794 2520 2433 22 0 0 0 chr4 145218666 145218688 -57109659 + AT_rich Low_complexity Low_complexity 1 22 0 190 333 0 0 chr4 145219419 145219476 -57108871 + L2 LINE L2 3256 3312 -1 202 61 61 0 chr4 145220872 145220905 -57107442 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 533 252 7 28 chr4 145221607 145221750 -57106597 + LTR41 LTR ERVL 1 140 -633 219 103 0 0 chr4 145221761 145221800 -57106547 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 778 207 61 96 chr4 145222024 145222304 -57106043 + LTR41 LTR ERVL 498 767 -6 261 0 0 0 chr4 145222690 145222719 -57105628 + (T)n Simple_repeat Simple_repeat 1 29 0 531 80 13 0 chr4 145223189 145223264 -57105083 + MADE1 DNA Mariner 1 76 -4 1368 210 51 31 chr4 145225027 145225380 -57102967 + MLT1A2 LTR MaLR 4 363 -11 220 242 40 16 chr4 145225596 145225720 -57102627 + (TA)n Simple_repeat Simple_repeat 1 127 0 21 36 0 0 chr4 145226550 145226578 -57101769 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 145227328 145227349 -57100998 + AT_rich Low_complexity Low_complexity 1 21 0 275 262 24 0 chr4 145227625 145227709 -57100638 + T-rich Low_complexity Low_complexity 4 89 0 197 386 92 13 chr4 145228043 145228196 -57100151 + L2 LINE L2 3104 3268 -4 207 0 0 0 chr4 145228199 145228222 -57100125 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 189 319 85 11 chr4 145228320 145228414 -57099933 - MER5B DNA MER1_type -1 177 77 6770 230 71 27 chr4 145229522 145230150 -57098197 + Charlie6 DNA MER1_type 2 601 -2899 1720 183 6 6 chr4 145230150 145230462 -57097885 - AluJo SINE Alu 0 312 1 6770 230 71 27 chr4 145230462 145231848 -57096499 + Charlie6 DNA MER1_type 601 2104 -1396 1215 228 90 23 chr4 145231840 145232239 -57096108 + Charlie6 DNA MER1_type 2868 3293 -207 * 792 241 59 10 chr4 145232252 145232455 -57095892 - MLT1E2 LTR MaLR 0 626 414 392 109 0 0 chr4 145232472 145232536 -57095811 - L1MA5 LINE L1 0 6300 6237 2111 102 7 10 chr4 145232557 145232861 -57095486 - AluSp SINE Alu -10 303 1 443 240 68 0 chr4 145232864 145233044 -57095303 - L1M1 LINE L1 -812 5488 5298 2423 83 3 0 chr4 145233054 145233366 -57094981 - AluSp SINE Alu 0 313 1 1176 160 78 0 chr4 145233396 145233664 -57094683 - L1M1 LINE L1 -837 5309 5021 * 2577 205 19 46 chr4 145233661 145233710 -57094637 + L1 LINE L1 2873 2922 -3224 1435 154 64 64 chr4 145233710 145234022 -57094325 + AluSx SINE Alu 1 312 0 2577 205 19 46 chr4 145234022 145234666 -57093681 + L1 LINE L1 2922 3547 -2599 1014 242 56 69 chr4 145234666 145235042 -57093305 - MLT1E2 LTR MaLR -192 432 62 712 203 46 131 chr4 145235117 145235422 -57092925 + MLT1C LTR MaLR 112 467 0 3927 131 18 5 chr4 145235958 145236585 -57091762 + MER41B LTR ERV1 1 635 0 216 135 0 0 chr4 145236720 145236757 -57091590 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 43 47 0 0 chr4 145236901 145236965 -57091382 + AT_rich Low_complexity Low_complexity 1 64 0 199 77 26 26 chr4 145238646 145238685 -57089662 + (TG)n Simple_repeat Simple_repeat 2 40 0 322 354 24 12 chr4 145238764 145238928 -57089419 + L1MCc LINE L1 237 402 -6021 1564 214 71 3 chr4 145238995 145239332 -57089015 + MLT1A1 LTR MaLR 1 360 -5 1045 94 43 166 chr4 145239699 145240241 -57088106 + MER4C LTR ERV1 1 465 0 644 295 38 43 chr4 145240241 145240638 -57087709 + L1MCc LINE L1 1137 1531 -4892 24 77 0 0 chr4 145241429 145241481 -57086866 + AT_rich Low_complexity Low_complexity 1 52 0 1873 147 62 34 chr4 145241704 145242057 -57086290 + THE1B LTR MaLR 2 364 0 11163 107 6 1 chr4 145242057 145243625 -57084722 + THE1B-int LTR MaLR 1 1577 -3 1970 157 19 19 chr4 145243626 145243990 -57084357 + THE1B LTR MaLR 1 364 0 22 80 0 0 chr4 145245225 145245275 -57083072 + AT_rich Low_complexity Low_complexity 1 50 0 229 243 14 40 chr4 145246907 145246981 -57081366 + MLT1E2 LTR MaLR 1 72 -582 1272 257 136 7 chr4 145247052 145247472 -57080875 + MLT1E2 LTR MaLR 136 609 -17 467 355 84 29 chr4 145247548 145248058 -57080289 + MLT1K LTR MaLR 34 571 -17 501 47 0 0 chr4 145250275 145250339 -57078008 + (CA)n Simple_repeat Simple_repeat 2 65 0 911 194 31 76 chr4 145250341 145250768 -57077579 + MLT1A2 LTR MaLR 1 374 0 2178 184 26 0 chr4 145251710 145252101 -57076246 + Tigger1 DNA MER2_type 1 401 -2017 4680 155 19 9 chr4 145252202 145253007 -57075340 + Tigger1 DNA MER2_type 1606 2418 0 523 304 89 25 chr4 145254332 145254924 -57073423 + L1MCc LINE L1 1598 2227 -4895 382 207 128 43 chr4 145254949 145255137 -57073210 + L1MCc LINE L1 3540 3743 -3198 22 35 0 0 chr4 145255142 145255171 -57073176 + AT_rich Low_complexity Low_complexity 1 29 0 838 291 81 17 chr4 145255180 145255648 -57072699 + L1MCc LINE L1 4495 4992 -1949 1093 355 50 16 chr4 145255652 145256556 -57071791 - HERV16 LTR ERVL -2275 2721 1717 1120 361 52 2 chr4 145256626 145257130 -57071217 - HERV16 LTR ERVL -3414 1582 1054 277 397 15 0 chr4 145257677 145257808 -57070539 - HERV16 LTR ERVL -3414 1582 1450 660 299 28 5 chr4 145259706 145259920 -57068427 - MER20 DNA MER1_type 0 219 1 28 0 0 0 chr4 145260203 145260231 -57068116 + AT_rich Low_complexity Low_complexity 1 28 0 1023 297 82 5 chr4 145260248 145260628 -57067719 - LTR16B LTR ERVL 0 464 56 859 232 30 0 chr4 145260807 145261005 -57067342 - MER3 DNA MER1_type -1 208 5 23 68 0 0 chr4 145261273 145261317 -57067030 + AT_rich Low_complexity Low_complexity 1 44 0 9308 230 33 31 chr4 145261358 145261537 -57066810 - L1M3 LINE L1 -401 6018 5841 1839 102 4 4 chr4 145261537 145261792 -57066555 - AluSp SINE Alu -8 305 51 9308 230 33 31 chr4 145261792 145264938 -57063409 - L1M3 LINE L1 -578 5841 2586 1229 176 100 8 chr4 145264938 145265199 -57063148 - AluSx SINE Alu -27 285 1 9308 230 33 31 chr4 145265199 145267771 -57060576 - L1M3 LINE L1 -3833 2586 21 1897 199 15 39 chr4 145268772 145269123 -57059224 - MSTD LTR MaLR 0 396 55 2472 66 0 0 chr4 145269123 145269428 -57058919 - AluY SINE Alu -6 305 1 1897 199 15 39 chr4 145269428 145269482 -57058865 - MSTD LTR MaLR -341 55 1 2126 125 0 0 chr4 145270339 145270627 -57057720 + AluSg SINE Alu 13 300 -10 863 233 19 14 chr4 145271559 145271774 -57056573 - MLT1A1 LTR MaLR 0 365 150 607 178 60 93 chr4 145271798 145272027 -57056320 - L1MA9 LINE L1 0 6317 6134 1616 190 0 3 chr4 145272027 145272322 -57056025 + AluJb SINE Alu 10 303 -9 607 178 60 93 chr4 145272322 145272385 -57055962 - L1MA9 LINE L1 -183 6134 6070 3520 173 26 9 chr4 145272394 145273081 -57055266 + L1MA9 LINE L1 5318 6016 -296 560 182 64 9 chr4 145273081 145273191 -57055156 - MLT1A1 LTR MaLR -207 158 43 21 36 0 0 chr4 145273294 145273322 -57055025 + AT_rich Low_complexity Low_complexity 1 28 0 303 314 22 63 chr4 145273384 145273607 -57054740 + Charlie8 DNA MER1_type 53 266 -2151 357 360 72 5 chr4 145273864 145274056 -57054291 + MIR SINE MIR 30 241 -21 318 26 0 0 chr4 145274741 145274780 -57053567 + (CA)n Simple_repeat Simple_repeat 2 40 0 1487 358 76 20 chr4 145274813 145276228 -57052119 - ERVL LTR ERVL -3006 2758 1264 267 324 106 11 chr4 145276403 145276582 -57051765 - ERVL LTR ERVL -4726 928 733 311 336 72 24 chr4 145276647 145276897 -57051450 - ERVL LTR ERVL -5148 616 355 1098 222 167 59 chr4 145277970 145278527 -57049820 - MLT1E3 LTR MaLR -2 622 1 21 0 0 0 chr4 145279103 145279124 -57049223 + AT_rich Low_complexity Low_complexity 1 21 0 201 39 0 0 chr4 145279914 145279940 -57048407 + (TA)n Simple_repeat Simple_repeat 2 27 0 2065 133 0 0 chr4 145279940 145280234 -57048113 - AluSx SINE Alu -18 294 1 427 344 37 28 chr4 145281086 145281304 -57047043 + MIR SINE MIR 32 251 -11 1893 129 3 43 chr4 145282085 145282410 -57045937 + AluSx SINE Alu 1 312 0 230 303 33 49 chr4 145282953 145283075 -57045272 + MIR SINE MIR 5 124 -138 826 218 35 40 chr4 145283881 145284083 -57044264 - L2 LINE L2 -498 2816 2616 2610 191 13 26 chr4 145284311 145284856 -57043491 - MER34 LTR ERV1 -2 540 3 183 80 0 0 chr4 145286064 145286089 -57042258 + (TA)n Simple_repeat Simple_repeat 2 26 0 1518 246 28 17 chr4 145286678 145287039 -57041308 + MSTD LTR MaLR 1 365 -31 23 68 0 0 chr4 145287219 145287263 -57041084 + AT_rich Low_complexity Low_complexity 1 44 0 200 370 65 9 chr4 145288029 145288137 -57040210 + L2 LINE L2 3151 3264 -8 2102 61 0 0 chr4 145288186 145288447 -57039900 + MER41A LTR ERV1 1 261 -293 4166 115 51 51 chr4 145288450 145289235 -57039112 - LTR1 LTR ERV1 0 785 1 16562 163 33 12 chr4 145289278 145291372 -57036975 - HUERS-P2 LTR ERV1 0 3088 921 308 16 16 78 chr4 145291372 145291436 -57036911 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 16562 163 33 12 chr4 145291436 145292166 -57036181 - HUERS-P2 LTR ERV1 -2167 921 207 4186 147 26 34 chr4 145292261 145293052 -57035295 - LTR1 LTR ERV1 0 785 1 2321 80 3 3 chr4 145293079 145293390 -57034957 + MER41A LTR ERV1 244 554 0 258 278 17 0 chr4 145295564 145295679 -57032668 + L1MEc LINE L1 2199 2315 -4081 28 0 0 0 chr4 145297490 145297518 -57030829 + AT_rich Low_complexity Low_complexity 1 28 0 259 153 0 129 chr4 145300706 145300791 -57027556 - MLT2B2 LTR ERVL 0 520 442 1264 209 24 73 chr4 145300805 145300917 -57027430 - MLT2B2 LTR ERVL -201 314 198 1894 133 42 3 chr4 145300917 145301203 -57027144 - AluSg SINE Alu -13 297 1 1264 209 24 73 chr4 145301203 145301420 -57026927 - MLT2B2 LTR ERVL -317 198 1 3242 165 62 16 chr4 145301681 145302355 -57025992 + MER67C LTR ERV1 6 710 0 2355 188 22 5 chr4 145303002 145303449 -57024898 - LTR45 LTR ERV1 0 525 71 783 281 17 29 chr4 145303645 145303883 -57024464 - LTR43 LTR ERV1 -137 465 231 1691 166 3 21 chr4 145304158 145304448 -57023899 - LOR1b LTR ERV1 0 461 177 21 36 0 0 chr4 145306305 145306333 -57022014 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr4 145306547 145306576 -57021771 + (TA)n Simple_repeat Simple_repeat 1 29 0 233 156 16 47 chr4 145307319 145307383 -57020964 + GA-rich Low_complexity Low_complexity 3 64 0 679 325 75 55 chr4 145307624 145308138 -57020209 - L2 LINE L2 -19 3294 2772 254 297 29 101 chr4 145308505 145308643 -57019704 + MIR3 SINE MIR 75 202 -6 212 0 36 0 chr4 145310173 145310201 -57018146 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 22 99 0 0 chr4 145310739 145310810 -57017537 + AT_rich Low_complexity Low_complexity 1 71 0 3928 163 26 23 chr4 145311183 145311951 -57016396 + LTR1 LTR ERV1 16 785 0 25 31 0 0 chr4 145312527 145312559 -57015788 + AT_rich Low_complexity Low_complexity 1 32 0 2031 149 3 0 chr4 145313117 145313426 -57014921 + AluSx SINE Alu 1 310 -2 2496 14 0 3 chr4 145313653 145313936 -57014411 + AluYa5 SINE Alu 28 309 -2 6222 90 17 2 chr4 145315124 145316312 -57012035 - L1PA10 LINE L1 -11 6157 4984 1515 183 27 37 chr4 145316723 145317023 -57011324 - AluJo SINE Alu -15 297 1 304 148 0 0 chr4 145318047 145318101 -57010246 - LOR1b-int LTR ERV1 -37 8083 8030 * 1616 118 35 0 chr4 145318100 145318355 -57009992 - LOR1b-int LTR ERV1 -2056 6064 5801 * 29241 128 48 44 chr4 145318341 145321253 -57007094 - LOR1b-int LTR ERV1 -2592 5528 2584 2017 117 0 30 chr4 145321253 145321553 -57006794 + AluSg SINE Alu 3 293 -17 29241 128 48 44 chr4 145321553 145324147 -57004200 - LOR1b-int LTR ERV1 -5536 2584 1 1986 180 62 16 chr4 145324147 145324531 -57003816 - LOR1b LTR ERV1 0 461 60 438 183 0 0 chr4 145324645 145324716 -57003631 - LTR45 LTR ERV1 -454 71 1 3152 176 113 8 chr4 145325219 145325854 -57002493 - MER44D DNA MER2_type -1 704 3 270 56 0 0 chr4 145326479 145326515 -57001832 + (CA)n Simple_repeat Simple_repeat 2 37 0 248 329 41 48 chr4 145326686 145326832 -57001515 - L2 LINE L2 0 3313 3169 623 281 62 14 chr4 145326992 145327202 -57001145 + MIR SINE MIR 13 232 -30 193 349 38 45 chr4 145327409 145327541 -57000806 + MIR SINE MIR 19 149 -59 23 0 0 0 chr4 145328591 145328614 -56999733 + AT_rich Low_complexity Low_complexity 1 23 0 369 167 19 9 chr4 145328614 145328722 -56999625 + (TA)n Simple_repeat Simple_repeat 2 110 0 291 28 0 0 chr4 145329331 145329367 -56998980 + (CA)n Simple_repeat Simple_repeat 2 37 0 2757 203 77 4 chr4 145329388 145329944 -56998403 - MER77 LTR ERV1 -8 597 1 27 49 0 0 chr4 145330737 145330778 -56997569 + AT_rich Low_complexity Low_complexity 1 41 0 252 86 0 0 chr4 145331011 145331046 -56997301 + (A)n Simple_repeat Simple_repeat 1 35 0 499 278 229 5 chr4 145331381 145331586 -56996761 + MIR SINE MIR 2 252 -10 588 275 50 10 chr4 145331793 145331924 -56996423 + MER3 DNA MER1_type 2 145 -64 2297 75 0 3 chr4 145331924 145332218 -56996129 - AluY SINE Alu -13 298 6 588 275 50 10 chr4 145332218 145332286 -56996061 + MER3 DNA MER1_type 145 209 0 229 239 0 0 chr4 145332245 145332291 -56996056 - MER3 DNA MER1_type -121 88 43 * 478 279 26 19 chr4 145332793 145332947 -56995400 - LTR33 LTR ERVL -366 155 1 641 254 0 0 chr4 145333094 145333278 -56995069 - AluJb SINE Alu 0 330 147 1779 166 7 10 chr4 145333482 145333789 -56994558 + AluJb SINE Alu 7 312 0 253 309 50 80 chr4 145335208 145335409 -56992938 - L2 LINE L2 0 3313 3119 2318 77 0 49 chr4 145335924 145336248 -56992099 + AluY SINE Alu 1 308 -3 25 0 0 0 chr4 145336471 145336496 -56991851 + AT_rich Low_complexity Low_complexity 1 25 0 469 287 11 52 chr4 145336589 145336763 -56991584 + MIR SINE MIR 15 181 -81 30 69 0 0 chr4 145337029 145337087 -56991260 + AT_rich Low_complexity Low_complexity 1 58 0 212 290 41 118 chr4 145337478 145337647 -56990700 + MIR3 SINE MIR 43 198 -10 216 0 0 0 chr4 145338094 145338118 -56990229 + (T)n Simple_repeat Simple_repeat 1 24 0 718 202 6 46 chr4 145339469 145339642 -56988705 - FRAM SINE Alu -11 165 1 22 70 0 0 chr4 145339844 145339887 -56988460 + AT_rich Low_complexity Low_complexity 1 43 0 667 311 54 25 chr4 145340607 145340848 -56987499 - MIR SINE MIR 0 262 15 486 274 166 31 chr4 145341418 145341641 -56986706 - MLT1E LTR MaLR -270 323 71 906 204 121 22 chr4 145341936 145342344 -56986003 - MLT1D LTR MaLR 0 505 23 68 55 0 0 chr4 145342692 145342802 -56985545 + AT_rich Low_complexity Low_complexity 1 110 0 4945 187 23 8 chr4 145343814 145344148 -56984199 - L1PA16 LINE L1 -4 6162 5834 1632 177 61 12 chr4 145344148 145344475 -56983872 + MER61A LTR ERV1 1 343 0 4945 187 23 8 chr4 145344475 145345502 -56982845 - L1PA16 LINE L1 -332 5834 4784 23 54 0 0 chr4 145345957 145345994 -56982353 + AT_rich Low_complexity Low_complexity 1 37 0 182 346 45 30 chr4 145347002 145347135 -56981212 + MIR SINE MIR 90 224 -38 409 299 156 34 chr4 145348115 145348473 -56979874 + MLT1L LTR MaLR 200 601 -14 298 218 46 81 chr4 145349128 145349215 -56979132 - MIR SINE MIR -142 120 37 275 381 48 24 chr4 145349690 145349816 -56978531 + L2 LINE L2 3122 3250 -22 1079 220 13 0 chr4 145350102 145350334 -56978013 + MER46A DNA MER2_type 1 235 -1 765 223 25 55 chr4 145350390 145350592 -56977755 + MLT1A1 LTR MaLR 1 196 -169 708 107 8 16 chr4 145350631 145350752 -56977595 + THE1C-int LTR MaLR 1461 1580 0 1805 169 29 40 chr4 145350752 145351131 -56977216 + THE1C LTR MaLR 1 375 0 620 227 0 45 chr4 145351147 145351301 -56977046 + MLT1A1 LTR MaLR 219 365 0 1733 197 3 0 chr4 145352056 145352366 -56975981 - AluJo SINE Alu -1 311 1 397 57 0 0 chr4 145352799 145352852 -56975495 + L1MC1 LINE L1 6275 6327 -6 31 76 0 0 chr4 145352929 145352995 -56975352 + AT_rich Low_complexity Low_complexity 1 66 0 240 316 57 11 chr4 145353007 145353184 -56975163 - L1ME LINE L1 -2374 3706 3522 554 276 92 14 chr4 145353266 145354319 -56974028 - L1ME LINE L1 -2705 3375 2136 273 146 0 0 chr4 145354323 145354371 -56973976 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 409 271 28 31 chr4 145354371 145354660 -56973687 - L1ME LINE L1 -4075 2186 1838 595 301 87 18 chr4 145354716 145355689 -56972658 - L1ME LINE L1 -4374 1706 620 321 354 71 67 chr4 145355947 145356382 -56971965 - L1ME LINE L1 -5623 447 11 22 35 0 0 chr4 145356382 145356411 -56971936 + AT_rich Low_complexity Low_complexity 1 29 0 426 85 73 0 chr4 145359555 145359637 -56968710 + CT-rich Low_complexity Low_complexity 3 90 0 771 222 12 6 chr4 145359699 145359870 -56968477 + AluJb SINE Alu 140 311 -1 21 0 0 0 chr4 145360049 145360070 -56968277 + AT_rich Low_complexity Low_complexity 1 21 0 1939 152 33 30 chr4 145360709 145361072 -56967275 + THE1B LTR MaLR 1 364 0 10804 110 13 5 chr4 145361073 145362640 -56965707 + THE1B-int LTR MaLR 2 1580 0 1836 162 33 25 chr4 145362642 145363001 -56965346 + THE1B LTR MaLR 3 364 0 193 337 63 21 chr4 145363785 145363880 -56964467 + MIR SINE MIR 88 186 -76 276 216 14 0 chr4 145364002 145364076 -56964271 + (TA)n Simple_repeat Simple_repeat 2 76 0 327 326 33 28 chr4 145364293 145364474 -56963873 - MIR SINE MIR -42 220 39 26 30 0 0 chr4 145364626 145364659 -56963688 + AT_rich Low_complexity Low_complexity 1 33 0 1118 162 85 17 chr4 145365389 145365624 -56962723 + L1PA16 LINE L1 5907 6157 -9 25 31 0 0 chr4 145366821 145366853 -56961494 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr4 145367152 145367176 -56961171 + AT_rich Low_complexity Low_complexity 1 24 0 183 300 33 0 chr4 145368220 145368280 -56960067 - MIR SINE MIR -131 77 16 2188 113 0 0 chr4 145370148 145370449 -56957898 + AluSg SINE Alu 1 301 -9 180 338 75 0 chr4 145370451 145370531 -56957816 - L2 LINE L2 -94 3219 3134 360 287 15 72 chr4 145371007 145371202 -56957145 - HERVL LTR ERVL -262 5392 5209 945 302 29 24 chr4 145371458 145371836 -56956511 + ERVL LTR ERVL 4126 4505 -1259 2150 160 42 44 chr4 145372868 145373299 -56955048 - MSTB1 LTR MaLR -2 430 1 21 57 0 0 chr4 145375283 145375318 -56953029 + AT_rich Low_complexity Low_complexity 1 35 0 2227 100 3 3 chr4 145376185 145376484 -56951863 - AluSg SINE Alu -11 299 1 1179 116 0 0 chr4 145376661 145376825 -56951522 + AluY SINE Alu 131 294 -17 1355 199 138 47 chr4 145377903 145378141 -56950206 - MLT1C LTR MaLR 0 467 252 396 0 0 0 chr4 145378141 145378185 -56950162 + (TG)n Simple_repeat Simple_repeat 2 45 0 1355 199 138 47 chr4 145378185 145378251 -56950096 - MLT1C LTR MaLR -215 252 193 4129 164 110 87 chr4 145378251 145379247 -56949100 + LTR28 LTR ERV1 2 1020 0 1355 199 138 47 chr4 145379247 145379369 -56948978 - MLT1C LTR MaLR -274 193 1 667 214 84 62 chr4 145380069 145380298 -56948049 + MER61D LTR ERV1 341 1232 -12 838 234 16 16 chr4 145381668 145381860 -56946487 - MLT1A1 LTR MaLR 0 365 174 1323 233 84 47 chr4 145381865 145382426 -56945921 - LTR48B LTR ERV1 0 644 22 956 191 0 11 chr4 145382450 145382628 -56945719 - MLT1A1 LTR MaLR -189 176 1 5768 195 43 81 chr4 145383232 145384871 -56943476 - MER52A LTR ERV1 0 1755 179 244 111 0 0 chr4 145385339 145385384 -56942963 - MER52C LTR ERV1 -900 378 334 2843 19 0 0 chr4 145385754 145386071 -56942276 + AluYb8 SINE Alu 1 317 -1 337 316 68 11 chr4 145387084 145387261 -56941086 - L1ME LINE L1 -439 5682 5496 353 326 62 33 chr4 145388071 145388378 -56939969 - L1MC4 LINE L1 -465 7577 7262 417 261 44 36 chr4 145388400 145388649 -56939698 - L1MC4 LINE L1 -878 7164 6914 22 70 0 0 chr4 145390005 145390048 -56938299 + AT_rich Low_complexity Low_complexity 1 43 0 337 143 13 13 chr4 145391028 145391105 -56937242 + CT-rich Low_complexity Low_complexity 4 80 0 23 0 0 0 chr4 145392459 145392482 -56935865 + AT_rich Low_complexity Low_complexity 1 23 0 307 271 6 90 chr4 145392664 145392841 -56935506 + L1ME4a LINE L1 5931 6092 -29 792 181 0 0 chr4 145393026 145393153 -56935194 - FLAM_C SINE Alu -6 127 1 24 0 0 0 chr4 145393418 145393442 -56934905 + AT_rich Low_complexity Low_complexity 1 24 0 32 0 0 0 chr4 145393657 145393689 -56934658 + AT_rich Low_complexity Low_complexity 1 32 0 190 143 0 0 chr4 145393947 145393975 -56934372 + MER5B DNA MER1_type 20 47 -131 192 97 0 0 chr4 145393978 145394009 -56934338 + (CAAAAA)n Simple_repeat Simple_repeat 5 35 0 1267 280 106 35 chr4 145394412 145394621 -56933726 + L1ME2 LINE L1 3716 3909 -2237 1874 171 0 0 chr4 145394621 145394919 -56933428 + AluJo SINE Alu 3 300 -12 1267 280 106 35 chr4 145394919 145395597 -56932750 + L1ME2 LINE L1 3909 4666 -1480 6936 176 123 15 chr4 145395612 145397057 -56931290 - MER52A LTR ERV1 0 1755 1 265 242 175 8 chr4 145397070 145397190 -56931157 + L1ME2 LINE L1 4694 4833 -1313 2321 56 3 20 chr4 145397355 145397661 -56930686 + AluY SINE Alu 1 301 -10 822 230 23 74 chr4 145397830 145398139 -56930208 + L1ME2 LINE L1 5764 6056 -108 211 343 39 29 chr4 145398287 145398389 -56929958 + MER5B DNA MER1_type 50 152 -26 2433 65 3 7 chr4 145398561 145398870 -56929477 + AluY SINE Alu 1 308 -3 346 319 142 0 chr4 145399333 145399502 -56928845 + MIR SINE MIR 17 209 -53 469 53 107 0 chr4 145399520 145399595 -56928752 - L1MA1 LINE L1 0 6302 6220 282 238 20 93 chr4 145400028 145400179 -56928168 - L1ME1 LINE L1 -107 6059 5920 234 339 54 0 chr4 145400207 145400319 -56928028 - MER117 DNA MER1_type -6 191 74 340 150 80 70 chr4 145400519 145400619 -56927728 + L1MC2 LINE L1 6235 6335 -9 643 284 37 30 chr4 145400974 145401242 -56927105 - MER93a LTR ERV1 0 402 133 1185 211 24 98 chr4 145402885 145403264 -56925083 - MLT1A1 LTR MaLR -12 353 3 426 136 0 0 chr4 145403968 145404049 -56924298 + (TG)n Simple_repeat Simple_repeat 1 81 0 24 67 0 0 chr4 145404094 145404139 -56924208 + AT_rich Low_complexity Low_complexity 1 45 0 3810 167 38 39 chr4 145404216 145405002 -56923345 - LTR1 LTR ERV1 0 785 1 2170 115 9 0 chr4 145405280 145405618 -56922729 - L1P LINE L1 -848 5298 4958 2269 141 6 3 chr4 145405618 145405972 -56922375 + THE1A LTR MaLR 1 355 0 1277 69 17 0 chr4 145405972 145406145 -56922202 + THE1A-int LTR MaLR 1 176 -1404 4363 102 35 5 chr4 145406147 145406797 -56921550 + L1PA8 LINE L1 5499 6168 -4 219 215 0 0 chr4 145407242 145407307 -56921040 + (TA)n Simple_repeat Simple_repeat 2 66 0 234 243 135 27 chr4 145407479 145407590 -56920757 - L1ME LINE L1 -452 5669 5547 1647 200 22 33 chr4 145407983 145408139 -56920208 + MLT1A1 LTR MaLR 1 157 -208 2502 76 0 0 chr4 145408139 145408442 -56919905 + AluSc SINE Alu 1 303 -6 1647 200 22 33 chr4 145408442 145408650 -56919697 + MLT1A1 LTR MaLR 157 361 -4 189 0 0 0 chr4 145408808 145408829 -56919518 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 202 360 93 22 chr4 145409085 145409224 -56919123 + L2 LINE L2 2660 2808 -506 617 248 20 0 chr4 145409342 145409495 -56918852 + MLT1B LTR MaLR 233 388 -2 2412 43 0 4 chr4 145409656 145409961 -56918386 - AluY SINE Alu 0 304 1 1777 193 20 0 chr4 145410020 145410321 -56918026 - AluJb SINE Alu -5 307 1 1920 145 132 5 chr4 145410418 145410798 -56917549 + MSTA LTR MaLR 1 428 0 264 289 141 8 chr4 145410843 145410964 -56917383 - MIR SINE MIR -4 258 122 272 257 117 56 chr4 145411200 145411449 -56916898 - HAL1 LINE L1 0 2507 2244 742 262 103 5 chr4 145411953 145412167 -56916180 - MLT1F1 LTR MaLR -2 565 331 717 262 18 6 chr4 145412409 145412577 -56915770 - MER5B DNA MER1_type -5 173 4 2119 119 3 0 chr4 145412899 145413192 -56915155 + AluSx SINE Alu 1 294 -18 283 93 0 0 chr4 145413801 145413844 -56914503 - U5 snRNA snRNA -73 43 1 381 254 186 57 chr4 145414200 145414393 -56913954 - MIR SINE MIR -10 252 35 1006 215 19 10 chr4 145414425 145414634 -56913713 - MER20 DNA MER1_type 0 219 9 1928 134 32 0 chr4 145414776 145415053 -56913294 - AluSg SINE Alu -18 292 7 12329 104 15 1 chr4 145415064 145417635 -56910712 - L1PA7 LINE L1 0 6154 3541 17811 147 14 98 chr4 145417635 145421669 -56906678 - L1P LINE L1 -2445 3701 9 715 193 0 15 chr4 145421883 145422018 -56906329 + FLAM_C SINE Alu 1 133 0 28 29 0 0 chr4 145423059 145423094 -56905253 + AT_rich Low_complexity Low_complexity 1 35 0 718 305 45 16 chr4 145423268 145423514 -56904833 - LTR16A LTR ERVL -9 441 189 903 260 70 6 chr4 145424337 145424652 -56903695 - L1M4 LINE L1 -2063 4894 4560 704 147 9 9 chr4 145424655 145424771 -56903576 + AluSq/x SINE Alu 1 116 -197 276 149 0 0 chr4 145424871 145424918 -56903429 + (A)n Simple_repeat Simple_repeat 1 47 0 480 247 19 26 chr4 145424966 145425120 -56903227 - L1M4 LINE L1 -2512 4445 4293 272 256 106 14 chr4 145425210 145425417 -56902930 - L1M4 LINE L1 -2806 4151 3926 1256 107 17 6 chr4 145425453 145425631 -56902716 - AluY SINE Alu -13 298 119 1276 248 101 22 chr4 145425649 145426226 -56902121 - L1M4 LINE L1 -3081 3876 3255 923 331 61 38 chr4 145426363 145427177 -56901170 - L1M4 LINE L1 -4550 2409 1539 457 183 143 8 chr4 145427206 145427332 -56901015 - BC200 scRNA scRNA -44 156 14 3445 285 71 45 chr4 145427386 145428802 -56899545 - L1M4 LINE L1 -5398 1461 8 648 283 121 36 chr4 145428805 145429564 -56898783 - L1MEc LINE L1 -4754 1642 819 312 361 43 17 chr4 145430041 145430271 -56898076 - L1MEc LINE L1 -5988 408 173 30 27 0 0 chr4 145430649 145430686 -56897661 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 145431104 145431125 -56897222 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr4 145431574 145431598 -56896749 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 185 0 0 39 chr4 145482719 145482745 -56845602 + (CAAAAA)n Simple_repeat Simple_repeat 5 29 0 1162 206 28 3 chr4 145483249 145483535 -56844812 - L1 LINE L1 -912 5234 4942 673 306 140 28 chr4 145483550 145484032 -56844315 + MLT1F1 LTR MaLR 1 567 0 829 188 63 36 chr4 145484887 145485110 -56843237 + MLT1A1 LTR MaLR 133 361 -4 3432 272 75 7 chr4 145485347 145486829 -56841518 + L1MD2 LINE L1 2397 3978 -2168 2127 174 22 3 chr4 145486839 145487206 -56841141 + MLT1B LTR MaLR 15 388 -2 3453 257 73 30 chr4 145487211 145489433 -56838914 + L1MD2 LINE L1 3987 6345 -14 221 399 17 22 chr4 145489496 145489674 -56838673 - MIR SINE MIR -37 225 49 348 299 0 37 chr4 145490475 145490582 -56837765 + L2 LINE L2 3193 3295 -18 21 0 0 0 chr4 145491078 145491099 -56837248 + AT_rich Low_complexity Low_complexity 1 21 0 2061 138 0 22 chr4 145491517 145491835 -56836512 - AluSx SINE Alu -1 311 1 2136 58 0 22 chr4 145492365 145492683 -56835664 + AluY SINE Alu 11 322 0 208 259 0 17 chr4 145492813 145492871 -56835476 + GA-rich Low_complexity Low_complexity 2 58 0 247 167 0 33 chr4 145493244 145493304 -56835043 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 410 323 151 14 chr4 145493316 145493595 -56834752 - L1ME4a LINE L1 -95 6026 5710 25 65 0 0 chr4 145493676 145493722 -56834625 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr4 145493962 145493987 -56834360 + AT_rich Low_complexity Low_complexity 1 25 0 30 69 0 0 chr4 145494105 145494163 -56834184 + AT_rich Low_complexity Low_complexity 1 58 0 2086 175 114 15 chr4 145494435 145494954 -56833393 - L1MD3 LINE L1 -1 7994 7425 330 216 20 69 chr4 145494954 145495056 -56833291 - MLT1F1 LTR MaLR -419 148 52 323 186 52 10 chr4 145495069 145495166 -56833181 - L1MC3 LINE L1 -684 7101 7001 407 280 63 11 chr4 145495360 145495549 -56832798 + L2 LINE L2 2395 2593 -721 334 233 22 33 chr4 145495773 145495863 -56832484 - MER58 DNA MER1_type -2154 266 178 627 281 206 14 chr4 145495961 145496320 -56832027 + L2 LINE L2 2882 3309 -4 384 130 0 29 chr4 145497327 145497396 -56830951 + Alu SINE Alu 236 302 0 216 380 0 0 chr4 145497613 145497684 -56830663 + MIR SINE MIR 171 241 -21 1729 184 0 3 chr4 145497862 145498177 -56830170 - AluJo SINE Alu 0 314 1 385 319 52 29 chr4 145501375 145501585 -56826762 + MIR SINE MIR 48 262 0 1980 207 81 15 chr4 145503246 145503702 -56824645 + MLT2B1 LTR ERVL 3 395 -19 348 89 44 22 chr4 145503739 145503829 -56824518 + (TA)n Simple_repeat Simple_repeat 1 92 0 181 278 69 14 chr4 145505249 145505321 -56823026 - MIR SINE MIR -13 249 174 2273 93 0 0 chr4 145507616 145507905 -56820442 + AluSc SINE Alu 1 289 -20 642 219 129 20 chr4 145508206 145508407 -56819940 + MER58A DNA MER1_type 2 224 0 222 325 96 32 chr4 145509755 145509912 -56818435 + L2 LINE L2 2235 2401 -913 722 194 0 8 chr4 145509919 145510053 -56818294 - FLAM_C SINE Alu -10 133 1 289 375 19 39 chr4 145510106 145510314 -56818033 + L2 LINE L2 2703 2906 -408 2112 129 0 0 chr4 145510962 145511272 -56817075 - AluSp SINE Alu -3 310 1 252 0 0 0 chr4 145512836 145512864 -56815483 + (CA)n Simple_repeat Simple_repeat 1 28 0 4824 182 34 36 chr4 145513145 145514632 -56813715 + L1MA5 LINE L1 4821 6300 0 444 314 49 22 chr4 145514952 145514980 -56813367 + L2 LINE L2 3077 3103 -210 207 0 0 0 chr4 145514980 145515003 -56813344 + (TG)n Simple_repeat Simple_repeat 2 24 0 444 314 49 22 chr4 145515003 145515200 -56813147 + L2 LINE L2 3103 3308 -5 624 213 113 6 chr4 145515297 145515457 -56812890 - MER45A DNA AcHobo -1 177 1 27 0 0 0 chr4 145515667 145515694 -56812653 + AT_rich Low_complexity Low_complexity 1 27 0 3593 160 24 3 chr4 145517932 145518599 -56809748 - L1MA6 LINE L1 0 6300 5620 349 235 12 0 chr4 145518770 145518855 -56809492 - L1MC4 LINE L1 -1 8041 7956 * 455 310 92 5 chr4 145518833 145519017 -56809330 - L1MC4 LINE L1 -291 7751 7552 755 295 40 81 chr4 145519021 145519550 -56808797 + MER34 LTR ERV1 1 507 -35 2220 252 59 14 chr4 145519600 145520326 -56808021 - L1MC4 LINE L1 -495 7547 6789 532 271 0 8 chr4 145520330 145520448 -56807899 - MER21B LTR ERV1 -422 441 325 214 311 34 42 chr4 145520538 145520657 -56807690 + L2 LINE L2 3178 3295 -18 23 0 0 0 chr4 145521080 145521103 -56807244 + AT_rich Low_complexity Low_complexity 1 23 0 1056 214 42 0 chr4 145521164 145521379 -56806968 + MER58A DNA MER1_type 1 224 0 333 0 0 0 chr4 145521775 145521812 -56806535 + (CA)n Simple_repeat Simple_repeat 2 38 0 264 312 21 21 chr4 145521996 145522089 -56806258 - MLT1L LTR MaLR -93 522 430 23 68 0 0 chr4 145522382 145522426 -56805921 + AT_rich Low_complexity Low_complexity 1 44 0 494 358 32 8 chr4 145522482 145522728 -56805619 + MIR SINE MIR 10 261 -1 264 312 21 21 chr4 145522936 145523029 -56805318 - MLT1L LTR MaLR -93 522 430 1712 208 36 10 chr4 145524163 145524553 -56803794 - MLT1C LTR MaLR 0 467 68 6809 223 46 41 chr4 145524569 145526403 -56801944 + MER52A LTR ERV1 4 1755 0 2329 113 8 3 chr4 145528484 145528837 -56799510 - THE1A LTR MaLR 0 355 1 240 377 133 30 chr4 145529919 145530256 -56798091 - MER115 DNA AcHobo -321 372 1 1741 105 0 0 chr4 145532203 145532432 -56795915 + AluSq SINE Alu 36 264 -49 225 0 0 0 chr4 145532451 145532476 -56795871 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr4 145532822 145532845 -56795502 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr4 145532902 145532931 -56795416 + AT_rich Low_complexity Low_complexity 1 29 0 1037 326 39 9 chr4 145534014 145534446 -56793901 + LTR16B LTR ERVL 8 452 -12 180 0 0 0 chr4 145534800 145534820 -56793527 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 1874 153 0 3 chr4 145534820 145535108 -56793239 - AluSx SINE Alu -25 287 1 596 354 65 22 chr4 145535321 145535691 -56792656 + HERV16 LTR ERVL 618 1003 -3993 799 306 4 0 chr4 145535783 145536012 -56792335 + HERV16 LTR ERVL 1140 1369 -3627 4872 127 175 94 chr4 145536031 145537471 -56790876 + pTR5 LTR ERV1 589 2438 0 1925 337 57 28 chr4 145537804 145538194 -56790153 + HERV16 LTR ERVL 1916 2293 -2703 1621 217 20 23 chr4 145538194 145538585 -56789762 - MLT1B LTR MaLR 0 390 1 1925 337 57 28 chr4 145538585 145539180 -56789167 + HERV16 LTR ERVL 2293 2929 -2067 28 48 0 0 chr4 145539806 145539848 -56788499 + AT_rich Low_complexity Low_complexity 1 42 0 2165 191 27 113 chr4 145539937 145540623 -56787724 + L1MA9 LINE L1 5644 6272 -40 26 50 0 0 chr4 145540794 145540834 -56787513 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 145541154 145541175 -56787172 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 145541845 145541870 -56786477 + AT_rich Low_complexity Low_complexity 1 25 0 322 290 10 10 chr4 145542961 145543061 -56785286 + (CA)n Simple_repeat Simple_repeat 1 100 0 303 281 39 0 chr4 145544255 145544383 -56783964 + (TCTA)n Simple_repeat Simple_repeat 2 134 0 300 322 0 22 chr4 145545700 145545790 -56782557 + L1MC4 LINE L1 6616 6703 -1339 1881 177 10 49 chr4 145545815 145546221 -56782126 + MLT1B LTR MaLR 1 390 0 776 239 119 5 chr4 145547465 145547666 -56780681 + MER58A DNA MER1_type 1 224 0 507 256 23 0 chr4 145547992 145548121 -56780226 + MLT1I LTR MaLR 26 157 -252 1718 194 82 17 chr4 145548155 145548691 -56779656 + MLT2A2 LTR ERVL 1 554 0 1457 189 25 42 chr4 145548778 145549181 -56779166 + L1 LINE L1 2927 3322 -2824 419 185 212 7 chr4 145549185 145549331 -56779016 + L1ME1 LINE L1 1369 1544 -4882 903 211 97 21 chr4 145549336 145549633 -56778714 + L1ME1 LINE L1 1729 2152 -4418 2237 66 0 28 chr4 145549685 145549974 -56778373 + AluY SINE Alu 1 281 -30 350 127 0 0 chr4 145549998 145550053 -56778294 + L1ME1 LINE L1 2174 2228 -4198 3475 275 40 31 chr4 145550121 145551861 -56776486 + L1ME1 LINE L1 2250 4090 -2336 544 277 103 30 chr4 145551872 145552102 -56776245 + MLT1D LTR MaLR 224 497 -8 3875 203 42 4 chr4 145552144 145553489 -56774858 - L1PB4 LINE L1 0 6858 5472 5211 192 137 18 chr4 145553489 145554584 -56773763 + MER52A LTR ERV1 1 1347 -408 657 238 0 26 chr4 145554584 145554735 -56773612 + MER52A LTR ERV1 1451 1597 -158 8489 257 27 63 chr4 145554735 145557852 -56770495 - L1PB4 LINE L1 -3834 3014 13 293 200 17 0 chr4 145557845 145557905 -56770442 + L1ME1 LINE L1 4796 4856 -1570 * 1462 213 67 20 chr4 145558133 145558490 -56769857 - MLT1A2 LTR MaLR 0 374 1 2093 210 46 19 chr4 145559191 145559714 -56768633 - L1MC3 LINE L1 -41 7744 7208 267 274 7 67 chr4 145559714 145559849 -56768498 - MLT1F1 LTR MaLR -429 138 12 1295 220 58 26 chr4 145559849 145559925 -56768422 - L1MC3 LINE L1 -714 7071 6999 2356 106 28 19 chr4 145559925 145560284 -56768063 - THE1B LTR MaLR -2 362 1 1295 220 58 26 chr4 145560284 145560553 -56767794 - L1MC3 LINE L1 -786 6999 6715 1953 161 48 17 chr4 145561930 145562283 -56766064 + THE1B LTR MaLR 1 364 0 4956 89 4 7 chr4 145563007 145563702 -56764645 + L1PA10 LINE L1 5473 6165 -3 659 284 92 33 chr4 145564414 145564685 -56763662 + LTR16A LTR ERVL 164 450 0 793 291 162 28 chr4 145564735 145565234 -56763113 - MER20B DNA MER1_type -196 587 22 253 301 62 9 chr4 145565285 145565398 -56762949 - L2 LINE L2 -554 2760 2642 505 277 17 90 chr4 145565449 145565738 -56762609 - L1ME3 LINE L1 -12 6150 5883 1640 274 42 53 chr4 145565752 145566612 -56761735 + L1ME1 LINE L1 5596 6445 -1 315 104 0 0 chr4 145566722 145566770 -56761577 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 203 200 0 18 chr4 145566786 145566841 -56761506 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 36 0 0 chr4 145566945 145566973 -56761374 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr4 145567008 145567037 -56761310 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 145567885 145567916 -56760431 + AT_rich Low_complexity Low_complexity 1 31 0 3422 234 57 48 chr4 145568184 145569441 -56758906 - Charlie1 DNA MER1_type -34 2727 1461 3078 158 10 15 chr4 145569444 145570129 -56758218 - L1M1 LINE L1 -493 5812 5128 278 281 10 21 chr4 145570437 145570533 -56757814 + L1MEc LINE L1 167 261 -6135 555 249 11 60 chr4 145570647 145570760 -56757587 + Charlie1 DNA MER1_type 1821 1923 -838 2311 92 0 0 chr4 145570760 145571054 -56757293 - AluSc SINE Alu -15 294 1 555 249 11 60 chr4 145571054 145571125 -56757222 + Charlie1 DNA MER1_type 1923 1996 -765 508 192 48 8 chr4 145571212 145571337 -56757010 + L1ME1 LINE L1 4968 5097 -1049 2727 243 60 9 chr4 145571343 145572125 -56756222 + L1ME1 LINE L1 5313 6134 -32 321 271 10 10 chr4 145572844 145572940 -56755407 - HsTC2 DNA Tc2 -1776 122 27 759 127 85 0 chr4 145572945 145573063 -56755284 + THE1B LTR MaLR 1 128 -236 180 0 0 0 chr4 145573139 145573159 -56755188 + (TA)n Simple_repeat Simple_repeat 2 21 0 670 201 15 0 chr4 145573954 145574088 -56754259 + AluJb SINE Alu 60 195 -117 24 0 0 0 chr4 145574138 145574162 -56754185 + AT_rich Low_complexity Low_complexity 1 24 0 248 53 26 0 chr4 145574768 145574806 -56753541 + (TG)n Simple_repeat Simple_repeat 2 40 0 802 240 12 0 chr4 145575308 145575479 -56752868 - FRAM SINE Alu -3 173 1 32 26 0 0 chr4 145575559 145575598 -56752749 + AT_rich Low_complexity Low_complexity 1 39 0 1744 174 7 3 chr4 145575675 145575968 -56752379 - AluJb SINE Alu -18 294 1 21 57 0 0 chr4 145577026 145577061 -56751286 + AT_rich Low_complexity Low_complexity 1 35 0 213 329 0 13 chr4 145577379 145577455 -56750892 - MIR SINE MIR -110 152 78 545 316 24 34 chr4 145577478 145577687 -56750660 + MIR SINE MIR 2 208 -54 2190 115 3 0 chr4 145577778 145578065 -56750282 - AluSp SINE Alu -24 289 2 378 0 0 0 chr4 145578476 145578518 -56749829 + (TC)n Simple_repeat Simple_repeat 1 42 0 28 0 0 0 chr4 145578850 145578878 -56749469 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr4 145579491 145579524 -56748823 + AT_rich Low_complexity Low_complexity 1 33 0 1019 68 6 19 chr4 145579610 145579771 -56748576 + (GAA)n Simple_repeat Simple_repeat 3 161 0 1746 116 79 87 chr4 145579923 145580301 -56748046 - THE1C LTR MaLR 0 375 1 9109 135 34 35 chr4 145580301 145581883 -56746464 - THE1C-int LTR MaLR 0 1580 1 2156 128 50 19 chr4 145581883 145582242 -56746105 - THE1C LTR MaLR 0 375 6 1631 183 24 32 chr4 145582669 145583007 -56745340 - MLT1A1 LTR MaLR -30 335 1 1640 177 3 50 chr4 145583097 145583414 -56744933 + AluJb SINE Alu 2 303 -9 388 280 55 50 chr4 145583590 145583772 -56744575 + MIR SINE MIR 70 252 -10 7163 42 97 0 chr4 145584004 145585133 -56743214 - L1PA5 LINE L1 -3 6151 4986 290 319 0 0 chr4 145585184 145585278 -56743069 + MIR SINE MIR 153 246 -16 25 75 0 0 chr4 145585373 145585426 -56742921 + AT_rich Low_complexity Low_complexity 1 53 0 373 300 91 43 chr4 145585544 145585774 -56742573 - MIR SINE MIR -11 251 11 239 265 17 51 chr4 145586867 145586984 -56741363 + MER104 DNA Tc2 4 116 -64 1483 327 86 59 chr4 145586992 145587184 -56741163 - L2 LINE L2 -602 2712 2527 2711 243 25 3 chr4 145587184 145587822 -56740525 - MER82 DNA MER2_type -1 652 1 1483 327 86 59 chr4 145587822 145588857 -56739490 - L2 LINE L2 -787 2527 1452 483 335 39 0 chr4 145588876 145589055 -56739292 - L2 LINE L2 -2089 1225 1040 230 349 96 20 chr4 145593715 145593861 -56734486 + MLT1K LTR MaLR 86 242 -346 293 207 61 37 chr4 145594036 145594118 -56734229 + MLT1K LTR MaLR 480 563 -25 324 268 93 21 chr4 145595049 145595146 -56733201 + MIR SINE MIR 40 143 -65 2371 264 56 27 chr4 145595153 145595496 -56732851 - L1MEc LINE L1 -2920 3295 2963 963 185 126 67 chr4 145595496 145595766 -56732581 + AluSg SINE Alu 3 288 -12 2371 264 56 27 chr4 145595766 145596835 -56731512 - L1MEc LINE L1 -3252 2963 1855 25 0 0 0 chr4 145597135 145597160 -56731187 + AT_rich Low_complexity Low_complexity 1 25 0 626 372 30 21 chr4 145597174 145597510 -56730837 - LTR16A LTR ERVL -95 355 17 2328 252 35 5 chr4 145597859 145598526 -56729821 + L1MB4 LINE L1 5579 6163 -17 251 202 11 34 chr4 145598551 145598640 -56729707 + L1MB8 LINE L1 6091 6177 -1 301 369 31 22 chr4 145598649 145599009 -56729338 - MERVL LTR ERVL -378 5107 4745 560 359 67 28 chr4 145599149 145599508 -56728839 - MERVL LTR ERVL -1202 4562 4190 1496 233 38 27 chr4 145599616 145599992 -56728355 + MLT2D LTR ERVL 1 480 -40 25 0 0 0 chr4 145599993 145600018 -56728329 + AT_rich Low_complexity Low_complexity 1 25 0 251 174 87 14 chr4 145600018 145600052 -56728295 + MLT2D LTR ERVL 445 475 -45 360 0 0 0 chr4 145600052 145600092 -56728255 + (CA)n Simple_repeat Simple_repeat 2 41 0 251 174 87 14 chr4 145600092 145600126 -56728221 + MLT2D LTR ERVL 475 518 -2 484 318 38 26 chr4 145600126 145600393 -56727954 - MERVL LTR ERVL -1728 4036 3767 24580 146 23 21 chr4 145601129 145607517 -56720830 - L1PA8A LINE L1 -2 6444 5 734 236 0 0 chr4 145607527 145607667 -56720680 - FRAM SINE Alu -35 141 2 441 378 30 21 chr4 145607741 145608024 -56720323 - MERVL LTR ERVL -2608 3156 2868 7485 180 122 28 chr4 145608024 145609264 -56719083 + MER52A LTR ERV1 1 1428 -327 2258 50 43 0 chr4 145609264 145609542 -56718805 - AluY SINE Alu -21 290 1 7485 180 122 28 chr4 145609542 145609905 -56718442 + MER52A LTR ERV1 1428 1755 0 441 378 30 21 chr4 145609905 145609949 -56718398 - MERVL LTR ERVL -2896 2868 2826 555 343 53 5 chr4 145610020 145610227 -56718120 - LTR16A LTR ERVL -95 355 139 25 0 0 0 chr4 145610955 145610980 -56717367 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr4 145611084 145611110 -56717237 + AT_rich Low_complexity Low_complexity 1 26 0 1394 222 111 49 chr4 145613434 145613920 -56714427 - MLT2B1 LTR ERVL 0 520 5 229 196 54 0 chr4 145613942 145613998 -56714349 + L1MCa LINE L1 2008 2066 -4360 26 50 0 0 chr4 145614235 145614275 -56714072 + AT_rich Low_complexity Low_complexity 1 40 0 968 226 87 10 chr4 145614677 145614965 -56713382 - L1MA7 LINE L1 -3 6288 5979 11672 193 54 13 chr4 145614973 145618231 -56710116 - L1MA7 LINE L1 -497 5794 2425 459 317 109 44 chr4 145618323 145618802 -56709545 + LTR33 LTR ERVL 12 521 0 3813 186 18 1 chr4 145619133 145619809 -56708538 - MER44D DNA MER2_type -1 704 18 391 272 37 31 chr4 145620221 145620383 -56707964 - HAL1 LINE L1 -824 1683 1521 22 0 0 0 chr4 145620995 145621017 -56707330 + AT_rich Low_complexity Low_complexity 1 22 0 186 318 93 47 chr4 145622013 145622120 -56706227 - L2 LINE L2 -24 3248 3137 21 0 0 0 chr4 145625024 145625045 -56703302 + AT_rich Low_complexity Low_complexity 1 21 0 195 162 0 0 chr4 145625553 145625590 -56702757 + (TG)n Simple_repeat Simple_repeat 2 38 0 309 87 22 0 chr4 145626786 145626832 -56701515 - MLT2B1 LTR ERVL 0 515 469 321 68 0 0 chr4 145626882 145626926 -56701421 + (GA)n Simple_repeat Simple_repeat 1 44 0 1494 203 95 55 chr4 145626951 145627384 -56700963 - MLT2B1 LTR ERVL -70 450 1 2754 290 99 25 chr4 145627414 145627642 -56700705 + L1MEc LINE L1 35 245 -6151 1833 167 56 14 chr4 145627642 145628001 -56700346 + THE1C LTR MaLR 2 375 0 2754 290 99 25 chr4 145628001 145629241 -56699106 + L1MEc LINE L1 245 1612 -4784 326 307 9 83 chr4 145629727 145629945 -56698402 - L1MCb LINE L1 -5605 440 239 23 0 0 0 chr4 145630204 145630227 -56698120 + AT_rich Low_complexity Low_complexity 1 23 0 2559 17 0 13 chr4 145630262 145630562 -56697785 - AluYa5 SINE Alu -15 296 1 678 80 0 0 chr4 145630568 145630656 -56697691 - AluY SINE Alu -188 123 36 23 33 0 0 chr4 145630705 145630735 -56697612 + AT_rich Low_complexity Low_complexity 1 30 0 26 50 0 0 chr4 145631606 145631646 -56696701 + AT_rich Low_complexity Low_complexity 1 40 0 900 310 67 5 chr4 145633159 145633530 -56694817 - LTR16C LTR ERVL -33 458 65 336 351 14 7 chr4 145634053 145634201 -56694146 - ERVL LTR ERVL -741 5023 4875 293 309 21 0 chr4 145634334 145634428 -56693919 - ERVL LTR ERVL -1015 4639 4544 354 264 69 49 chr4 145634479 145634623 -56693724 - MLT1H LTR MaLR -270 279 133 22 0 0 0 chr4 145636112 145636134 -56692213 + AT_rich Low_complexity Low_complexity 1 22 0 5765 147 40 18 chr4 145636200 145637670 -56690677 - L1PA15 LINE L1 -8 6157 4648 1645 167 47 10 chr4 145637670 145637970 -56690377 - AluJb SINE Alu -1 311 1 5765 147 40 18 chr4 145637970 145638131 -56690216 - L1PA15 LINE L1 -1517 4648 4492 5068 208 48 13 chr4 145638135 145638876 -56689471 + L1P LINE L1 3247 4047 -2099 195 100 0 0 chr4 145638876 145638906 -56689441 + (TAA)n Simple_repeat Simple_repeat 2 31 0 5068 208 48 13 chr4 145638906 145639362 -56688985 + L1P LINE L1 4047 4486 -1660 589 311 148 7 chr4 145640657 145641069 -56687278 + L1MC5 LINE L1 5472 5941 -1867 24 32 0 0 chr4 145641267 145641298 -56687049 + AT_rich Low_complexity Low_complexity 1 31 0 2801 123 6 48 chr4 145641635 145641931 -56686416 + L1PA14 LINE L1 5677 5945 -216 2451 54 0 16 chr4 145641931 145642247 -56686100 + AluY SINE Alu 1 311 0 2801 123 6 48 chr4 145642247 145642455 -56685892 + L1PA14 LINE L1 5945 6160 -1 1242 258 51 84 chr4 145642849 145643319 -56685028 + L1MC5 LINE L1 6617 7101 -860 2191 92 0 0 chr4 145643319 145643641 -56684706 - AluY SINE Alu 0 322 1 1242 258 51 84 chr4 145643641 145644054 -56684293 + L1MC5 LINE L1 7101 7471 -490 2172 104 33 3 chr4 145644054 145644353 -56683994 - AluSq SINE Alu -5 308 1 1242 258 51 84 chr4 145644353 145644410 -56683937 + L1MC5 LINE L1 7471 7528 -433 2344 179 12 16 chr4 145645153 145645583 -56682764 - MSTC LTR MaLR 0 428 1 21 36 0 0 chr4 145646616 145646644 -56681703 + AT_rich Low_complexity Low_complexity 1 28 0 39 22 0 0 chr4 145646749 145646795 -56681552 + AT_rich Low_complexity Low_complexity 1 46 0 482 298 203 22 chr4 145647061 145647461 -56680886 - L3 LINE CR1 -295 1282 811 335 274 42 11 chr4 145647469 145647564 -56680783 - L2 LINE L2 -4 3268 3171 5278 132 33 7 chr4 145647735 145648688 -56679659 - L1PB3 LINE L1 -2 6152 5171 562 313 67 43 chr4 145648958 145649452 -56678895 + MLT1H1 LTR MaLR 1 555 0 438 339 125 65 chr4 145649457 145651002 -56677345 - L2 LINE L2 -337 2977 1341 201 263 53 40 chr4 145651165 145651241 -56677106 - L3 LINE CR1 -903 674 598 513 301 9 0 chr4 145651243 145651421 -56676926 - L1MA10 LINE L1 -5 6161 5985 3691 253 54 29 chr4 145651485 145652219 -56676128 - L1MDa LINE L1 -2204 4336 3622 1342 185 58 34 chr4 145652219 145652511 -56675836 - AluJb SINE Alu -11 301 3 3691 253 54 29 chr4 145652511 145653763 -56674584 - L1MDa LINE L1 -2918 3622 2290 665 237 115 37 chr4 145653894 145654083 -56674264 + L1MD2 LINE L1 6132 7962 -33 21 36 0 0 chr4 145655027 145655055 -56673292 + AT_rich Low_complexity Low_complexity 1 28 0 245 27 54 0 chr4 145655711 145655748 -56672599 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 189 290 16 0 chr4 145656680 145656742 -56671605 + MIR SINE MIR 92 154 -108 25 31 0 0 chr4 145658109 145658141 -56670206 + AT_rich Low_complexity Low_complexity 1 32 0 245 313 164 51 chr4 145658493 145658634 -56669713 + MIR SINE MIR 20 190 -72 2190 62 14 3 chr4 145658634 145658925 -56669422 - AluY SINE Alu -17 294 1 245 313 164 51 chr4 145658925 145658978 -56669369 + MIR SINE MIR 190 236 -26 329 304 264 30 chr4 145659166 145659708 -56668639 - L1MC4a LINE L1 -1859 5949 5281 224 311 0 0 chr4 145660062 145660123 -56668224 + CT-rich Low_complexity Low_complexity 1 61 0 318 153 0 0 chr4 145660954 145661013 -56667334 + CT-rich Low_complexity Low_complexity 2 60 0 22 0 0 0 chr4 145661378 145661400 -56666947 + AT_rich Low_complexity Low_complexity 1 22 0 28 86 0 0 chr4 145661497 145661567 -56666780 + AT_rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr4 145661587 145661608 -56666739 + AT_rich Low_complexity Low_complexity 1 21 0 28 79 0 0 chr4 145662674 145662737 -56665610 + AT_rich Low_complexity Low_complexity 1 63 0 263 321 72 55 chr4 145663082 145663319 -56665028 - L3 LINE CR1 -97 1480 1240 29 0 0 0 chr4 145663787 145663816 -56664531 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr4 145664316 145664351 -56663996 + AT_rich Low_complexity Low_complexity 1 35 0 940 341 120 41 chr4 145664649 145665650 -56662697 + L2 LINE L2 514 1593 -1721 1679 188 36 6 chr4 145665863 145666192 -56662155 - MER2 DNA MER2_type -2 342 4 24 0 0 0 chr4 145666256 145666280 -56662067 + AT_rich Low_complexity Low_complexity 1 24 0 537 293 87 76 chr4 145668023 145668494 -56659853 + L1M4 LINE L1 1031 1506 -5036 22 0 0 0 chr4 145668528 145668550 -56659797 + AT_rich Low_complexity Low_complexity 1 22 0 380 267 123 49 chr4 145668563 145668848 -56659499 + L1M4 LINE L1 3710 4015 -2629 3444 174 49 30 chr4 145668862 145669591 -56658756 + L1MC1 LINE L1 5587 6329 -4 352 264 124 0 chr4 145669597 145669726 -56658621 + L1M4 LINE L1 4304 4448 -2196 2395 125 12 10 chr4 145669951 145670351 -56657996 - L1PA13 LINE L1 -5 6158 5758 357 273 178 11 chr4 145670386 145670650 -56657697 + L1M4 LINE L1 4795 5102 -1542 346 309 120 9 chr4 145670881 145671098 -56657249 + L1M4 LINE L1 5466 5706 -938 984 251 111 81 chr4 145671140 145671697 -56656650 - L1ME3A LINE L1 -95 6075 5502 260 329 70 44 chr4 145671697 145671855 -56656492 - L2 LINE L2 -2895 419 258 880 260 118 22 chr4 145672438 145672761 -56655586 + MLT1A1 LTR MaLR 12 365 0 8004 210 37 9 chr4 145673243 145674057 -56654290 - L1PB4 LINE L1 0 6858 6068 270 0 0 0 chr4 145674057 145674087 -56654260 + (TG)n Simple_repeat Simple_repeat 2 31 0 8004 210 37 9 chr4 145674087 145676185 -56652162 - L1PB4 LINE L1 -790 6068 3873 2406 251 38 24 chr4 145676267 145677492 -56650855 - L1PB4 LINE L1 -4483 2365 1214 1798 239 35 168 chr4 145677827 145679059 -56649288 - L1PB4 LINE L1 -5781 1068 1 23 0 0 0 chr4 145679078 145679101 -56649246 + AT_rich Low_complexity Low_complexity 1 23 0 4107 175 50 31 chr4 145679131 145679623 -56648724 - L1MA9 LINE L1 -38 6274 5756 288 0 0 0 chr4 145679623 145679655 -56648692 + (TG)n Simple_repeat Simple_repeat 2 33 0 4107 175 50 31 chr4 145679655 145680089 -56648258 - L1MA9 LINE L1 -556 5756 5331 1359 220 16 89 chr4 145680089 145680516 -56647831 + MSTD LTR MaLR 1 396 0 655 295 74 4 chr4 145681935 145682179 -56646168 + MIR SINE MIR 2 262 0 514 309 108 14 chr4 145683782 145684077 -56644270 + MLT1J LTR MaLR 92 414 -97 5994 151 92 13 chr4 145684145 145685329 -56643018 - MER52C LTR ERV1 0 1278 1 265 227 30 23 chr4 145685672 145685804 -56642543 + (TA)n Simple_repeat Simple_repeat 1 133 0 2532 107 13 11 chr4 145685810 145686184 -56642163 - THE1C LTR MaLR 0 375 1 725 309 113 18 chr4 145686439 145686950 -56641397 - L1ME3A LINE L1 -243 5927 5368 304 320 17 28 chr4 145686983 145687161 -56641186 - L1ME3A LINE L1 -816 5330 5155 2171 81 3 17 chr4 145687242 145687540 -56640807 + AluY SINE Alu 1 294 -17 358 299 81 27 chr4 145687764 145687985 -56640362 - L1ME3A LINE L1 -1961 4185 3953 1076 187 0 54 chr4 145687986 145688227 -56640120 - AluJo SINE Alu 0 312 85 379 267 43 19 chr4 145688325 145688486 -56639861 - L1ME3A LINE L1 -2260 3886 3722 21 36 0 0 chr4 145688532 145688560 -56639787 + AT_rich Low_complexity Low_complexity 1 28 0 254 345 35 55 chr4 145688586 145688786 -56639561 - MIR SINE MIR -56 206 11 197 314 35 58 chr4 145688981 145689067 -56639280 + L2 LINE L2 3153 3236 -36 1154 203 147 24 chr4 145690378 145690513 -56637834 + MLT1C LTR MaLR 47 164 -303 216 0 0 0 chr4 145690513 145690537 -56637810 + (CA)n Simple_repeat Simple_repeat 2 25 0 1154 203 147 24 chr4 145690537 145690776 -56637571 + MLT1C LTR MaLR 164 467 0 3358 228 103 20 chr4 145690823 145691997 -56636350 - L1MD2 LINE L1 -5 6354 5086 181 206 14 14 chr4 145692022 145692095 -56636252 + (TA)n Simple_repeat Simple_repeat 2 74 0 803 242 32 35 chr4 145692156 145692441 -56635906 - L1MD2 LINE L1 -1112 5034 4751 2745 101 75 7 chr4 145692466 145692882 -56635465 - MLT2A1 LTR ERVL 0 444 1 471 267 11 16 chr4 145692890 145693077 -56635270 - L1MD2 LINE L1 -1652 4494 4309 1258 180 9 0 chr4 145693100 145693317 -56635030 - AluJo SINE Alu -2 310 92 1785 168 48 3 chr4 145693318 145693725 -56634622 - L1M1 LINE L1 -694 5606 5185 235 135 0 0 chr4 145694083 145694120 -56634227 - L2 LINE L2 -91 3222 3186 422 256 95 7 chr4 145694145 145694282 -56634065 + MIR SINE MIR 58 206 -56 518 221 38 23 chr4 145694341 145694472 -56633875 + MIR SINE MIR 74 206 -56 364 279 23 16 chr4 145696132 145696261 -56632086 + HAL1 LINE L1 1485 1614 -893 304 332 47 54 chr4 145697149 145697426 -56630921 + HAL1 LINE L1 2222 2496 -11 23 33 0 0 chr4 145697431 145697461 -56630886 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 145697678 145697706 -56630641 + AT_rich Low_complexity Low_complexity 1 28 0 321 371 7 0 chr4 145697855 145697998 -56630349 - MIR SINE MIR -31 231 88 676 334 87 45 chr4 145698005 145698406 -56629941 - L2 LINE L2 -1 3312 2895 5159 48 9 3 chr4 145698424 145699068 -56629279 + L1PA5 LINE L1 5507 6154 0 51 0 0 0 chr4 145700980 145701031 -56627316 + AT_rich Low_complexity Low_complexity 1 51 0 490 309 96 16 chr4 145701317 145701566 -56626781 - L2 LINE L2 -62 3251 2983 1625 294 45 22 chr4 145701583 145702117 -56626230 + MER77 LTR ERV1 54 599 -6 1458 321 44 30 chr4 145702169 145702903 -56625444 - L2 LINE L2 -361 2953 2210 806 277 48 0 chr4 145702910 145703116 -56625231 + MER58A DNA MER1_type 9 224 0 233 176 20 20 chr4 145703120 145703171 -56625176 - L2 LINE L2 -1096 2218 2168 378 267 106 55 chr4 145703226 145703462 -56624885 - L2 LINE L2 -1063 2251 2004 2034 160 19 16 chr4 145703937 145704311 -56624036 + THE1C LTR MaLR 1 375 0 4849 223 33 7 chr4 145704398 145705489 -56622858 + L1MB3 LINE L1 1 1119 -5265 * 8569 221 63 34 chr4 145705485 145706864 -56621483 + L1MB3 LINE L1 1613 2950 -3469 2192 97 7 0 chr4 145706864 145707162 -56621185 - AluSc SINE Alu -9 300 1 8569 221 63 34 chr4 145707162 145707416 -56620931 + L1MB3 LINE L1 2950 3195 -3224 3977 123 21 2 chr4 145707416 145708028 -56620319 + L1PA13 LINE L1 5534 6157 -6 8569 221 63 34 chr4 145708028 145708966 -56619381 + L1MB3 LINE L1 3195 4104 -2315 1784 119 0 4 chr4 145708966 145709217 -56619130 + AluSx SINE Alu 49 298 -14 8569 221 63 34 chr4 145709217 145711310 -56617037 + L1MB3 LINE L1 4104 6416 -3 207 133 0 0 chr4 145711323 145711368 -56616979 + (TA)n Simple_repeat Simple_repeat 2 46 0 363 223 345 7 chr4 145711976 145712115 -56616232 + MER5A DNA MER1_type 1 186 -3 183 80 0 0 chr4 145713126 145713151 -56615196 + (A)n Simple_repeat Simple_repeat 1 25 0 2044 138 0 3 chr4 145714367 145714671 -56613676 + AluSx SINE Alu 6 308 -4 823 266 152 26 chr4 145714843 145715185 -56613162 - LTR16A LTR ERVL -14 436 52 21 36 0 0 chr4 145715340 145715368 -56612979 + AT_rich Low_complexity Low_complexity 1 28 0 2031 118 26 3 chr4 145716283 145716587 -56611760 + AluSx SINE Alu 2 312 0 25 75 0 0 chr4 145716734 145716787 -56611560 + AT_rich Low_complexity Low_complexity 1 53 0 778 266 281 14 chr4 145716811 145717524 -56610823 + L1ME3 LINE L1 4450 5352 -794 8968 184 38 11 chr4 145717604 145719132 -56609215 - L1MA6 LINE L1 0 6300 4815 1491 140 109 41 chr4 145719132 145719425 -56608922 - AluSq SINE Alu 0 313 1 8968 184 38 11 chr4 145719425 145720897 -56607450 - L1MA6 LINE L1 -1485 4815 3179 2328 250 78 14 chr4 145720933 145721626 -56606721 - L1MA6 LINE L1 -3200 2946 2210 1002 285 58 29 chr4 145721619 145722106 -56606241 + L1ME3 LINE L1 5494 5994 -168 * 4957 209 7 11 chr4 145722235 145723183 -56605164 + L1MA2 LINE L1 14 958 -6607 * 14029 179 46 4 chr4 145723182 145727347 -56601000 + L1MA2 LINE L1 3411 7723 0 2456 175 55 20 chr4 145728431 145728973 -56599374 + L1MA9 LINE L1 5751 6311 -1 25 31 0 0 chr4 145729491 145729523 -56598824 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr4 145729721 145729750 -56598597 + AT_rich Low_complexity Low_complexity 1 29 0 1411 209 120 9 chr4 145730028 145730354 -56597993 + MLT2D LTR ERVL 5 366 -48 254 113 0 19 chr4 145730354 145730407 -56597940 + (TC)n Simple_repeat Simple_repeat 2 53 0 324 0 0 0 chr4 145730415 145730451 -56597896 + (CA)n Simple_repeat Simple_repeat 2 37 0 249 218 18 0 chr4 145730540 145730595 -56597752 + (CAGAGA)n Simple_repeat Simple_repeat 4 59 0 21 0 0 0 chr4 145731431 145731452 -56596895 + AT_rich Low_complexity Low_complexity 1 21 0 642 297 59 23 chr4 145732184 145732403 -56595944 - MIR SINE MIR -24 238 12 2185 60 70 3 chr4 145732675 145732959 -56595388 - AluY SINE Alu -8 303 1 336 311 46 46 chr4 145733231 145733382 -56594965 + MIR SINE MIR 46 196 -66 250 197 15 30 chr4 145733529 145733595 -56594752 - HERVL18 LTR ERVL -249 5798 5734 2180 303 132 45 chr4 145735861 145736710 -56591637 + L2 LINE L2 1402 2175 -1139 252 0 0 0 chr4 145736710 145736738 -56591609 + (CA)n Simple_repeat Simple_repeat 2 29 0 2180 303 132 45 chr4 145736738 145737320 -56591027 + L2 LINE L2 2175 2958 -356 27 49 0 0 chr4 145740777 145740818 -56587529 + AT_rich Low_complexity Low_complexity 1 41 0 21 57 0 0 chr4 145741092 145741127 -56587220 + AT_rich Low_complexity Low_complexity 1 35 0 226 279 57 36 chr4 145741216 145741356 -56586991 + MER104 DNA Tc2 35 177 -3 750 290 203 0 chr4 145741440 145741795 -56586552 - Tigger8 DNA MER2_type -207 459 33 2007 126 67 17 chr4 145742451 145742808 -56585539 + THE1C LTR MaLR 1 375 0 508 344 48 22 chr4 145742847 145743077 -56585270 + MIR SINE MIR 8 243 -19 2168 105 3 3 chr4 145743077 145743373 -56584974 + AluSx SINE Alu 1 296 -16 343 350 6 71 chr4 145743442 145743625 -56584722 + MIR SINE MIR 23 193 -69 209 217 22 0 chr4 145745960 145746006 -56582341 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2092 130 7 3 chr4 145746249 145746549 -56581798 - AluSq SINE Alu -12 301 1 22 88 0 0 chr4 145747074 145747131 -56581216 + AT_rich Low_complexity Low_complexity 1 57 0 186 310 65 90 chr4 145748467 145748622 -56579725 + L2 LINE L2 2920 3070 -202 21 0 0 0 chr4 145748818 145748839 -56579508 + AT_rich Low_complexity Low_complexity 1 21 0 268 266 54 18 chr4 145748954 145749133 -56579214 + L1MC/D LINE L1 5287 5458 -706 326 248 118 30 chr4 145749218 145749391 -56578956 + L1MC/D LINE L1 5635 5822 -348 2055 113 32 0 chr4 145749736 145750019 -56578328 + AluSp SINE Alu 2 293 -20 2274 122 0 0 chr4 145750776 145751087 -56577260 - AluSx SINE Alu -1 311 1 589 193 17 8 chr4 145751897 145752016 -56576331 - FLAM_A SINE Alu -13 120 1 273 57 0 0 chr4 145753091 145753126 -56575221 + (TG)n Simple_repeat Simple_repeat 2 36 0 263 203 13 0 chr4 145753127 145753206 -56575141 + GA-rich Low_complexity Low_complexity 2 81 0 1169 225 55 19 chr4 145753593 145753864 -56574483 - MLT1A1 LTR MaLR 0 365 85 1918 261 81 45 chr4 145753864 145754615 -56573732 - MLT1A1-int LTR MaLR -21 1714 810 2816 229 36 20 chr4 145754652 145754890 -56573457 - MLT1A1-int LTR MaLR -1031 704 471 1475 220 49 9 chr4 145754890 145755240 -56573107 - MLT1A1 LTR MaLR -1 364 1 2816 229 36 20 chr4 145755240 145755694 -56572653 - MLT1A1-int LTR MaLR -1264 471 1 2159 125 39 25 chr4 145755740 145756099 -56572248 - THE1B LTR MaLR 0 364 1 1026 223 0 9 chr4 145757663 145757883 -56570464 - AluJo SINE Alu -53 259 42 22 0 0 0 chr4 145759602 145759624 -56568723 + AT_rich Low_complexity Low_complexity 1 22 0 508 80 80 6 chr4 145759624 145759786 -56568561 + (TA)n Simple_repeat Simple_repeat 1 174 0 253 220 144 43 chr4 145759860 145759975 -56568372 - MIR SINE MIR -61 147 50 180 301 41 27 chr4 145760148 145760221 -56568126 - MIR SINE MIR -142 120 47 25 31 0 0 chr4 145760624 145760656 -56567691 + AT_rich Low_complexity Low_complexity 1 32 0 4429 106 2 0 chr4 145760756 145761390 -56566957 - L1PA12 LINE L1 -3 6165 5531 1639 126 66 0 chr4 145761391 145761792 -56566555 + L1PA12 LINE L1 5110 5539 -629 23 54 0 0 chr4 145762005 145762042 -56566305 + AT_rich Low_complexity Low_complexity 1 37 0 306 336 22 37 chr4 145762871 145763005 -56565342 - MER5A DNA MER1_type -22 167 36 274 320 46 46 chr4 145762873 145763026 -56565321 + MER5A DNA MER1_type 36 188 -1 * 1820 165 42 3 chr4 145763049 145763383 -56564964 - L1MC1 LINE L1 0 6333 5987 251 368 68 0 chr4 145763876 145764009 -56564338 + MIR SINE MIR 120 261 -1 185 296 136 11 chr4 145764016 145764104 -56564243 - MIR SINE MIR -153 109 11 23 54 0 0 chr4 145765834 145765871 -56562476 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr4 145766498 145766527 -56561820 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr4 145766598 145766639 -56561708 + AT_rich Low_complexity Low_complexity 1 41 0 219 413 25 16 chr4 145766770 145766891 -56561456 + L2 LINE L2 3151 3272 0 481 332 103 15 chr4 145767699 145768088 -56560259 + MARNA DNA Mariner 11 433 -153 2000 93 24 10 chr4 145768803 145769093 -56559254 - AluY SINE Alu -17 294 1 1090 167 13 53 chr4 145770832 145771059 -56557288 + MER20 DNA MER1_type 2 219 0 305 242 0 0 chr4 145771736 145771798 -56556549 + L2 LINE L2 3252 3313 0 676 201 7 14 chr4 145771979 145772123 -56556224 - FLAM_C SINE Alu 0 143 1 330 269 0 43 chr4 145772138 145772231 -56556116 + L1MC4 LINE L1 6614 6702 -1340 265 96 0 39 chr4 145772234 145772280 -56556067 + (TA)n Simple_repeat Simple_repeat 2 46 0 2276 87 0 0 chr4 145772280 145772569 -56555778 - AluY SINE Alu -22 289 1 197 324 141 0 chr4 145772838 145772909 -56555438 + MIR SINE MIR 27 107 -101 210 150 0 0 chr4 145773434 145773474 -56554873 + (A)n Simple_repeat Simple_repeat 1 40 0 2060 108 14 0 chr4 145778406 145778693 -56549654 - AluSp SINE Alu -22 291 1 724 262 16 16 chr4 145780095 145780278 -56548069 - MER58A DNA MER1_type 0 224 42 795 283 73 7 chr4 145780781 145781208 -56547139 - L1M4 LINE L1 -3532 2614 2160 207 0 0 0 chr4 145781788 145781811 -56546536 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2049 126 7 3 chr4 145782447 145782756 -56545591 + AluSx SINE Alu 1 310 -2 3521 186 40 1 chr4 145783469 145784189 -56544158 + L1MA8 LINE L1 3669 4416 -1730 * 5318 146 82 4 chr4 145784180 145785581 -56542766 + L1MA8 LINE L1 4789 6289 -2 262 354 87 24 chr4 145785620 145785953 -56542394 - L2 LINE L2 0 3313 2960 814 174 70 17 chr4 145786176 145786348 -56541999 - MLT2D LTR ERVL -233 181 1 499 313 80 38 chr4 145786724 145787200 -56541147 - HERV16 LTR ERVL -1039 3957 3462 813 322 79 32 chr4 145787215 145787656 -56540691 - HERV16 LTR ERVL -2339 2657 2196 748 303 68 0 chr4 145788009 145788230 -56540117 - HERV16 LTR ERVL -2981 2015 1780 728 358 87 16 chr4 145788338 145788777 -56539570 - HERV16 LTR ERVL -3422 1574 1105 1453 290 34 11 chr4 145788992 145789289 -56539058 - LTR16B LTR ERVL 0 464 152 3069 159 2 0 chr4 145789289 145789785 -56538562 + LOR1a LTR ERV1 1 497 0 1453 290 34 11 chr4 145789785 145789928 -56538419 - LTR16B LTR ERVL -312 152 14 251 306 0 16 chr4 145789986 145790048 -56538299 + MLT1J1 LTR MaLR 254 314 -132 2086 123 27 0 chr4 145790460 145790760 -56537587 - AluSx SINE Alu -2 310 3 207 284 0 15 chr4 145791465 145791532 -56536815 + CT-rich Low_complexity Low_complexity 2 67 0 3540 138 27 3 chr4 145793203 145793792 -56534555 + LTR26 LTR ERV1 1 603 0 204 301 105 21 chr4 145794078 145794221 -56534126 + MIR SINE MIR 102 256 -6 2022 124 21 7 chr4 145795832 145796123 -56532224 - AluSq SINE Alu -18 295 1 1056 139 72 56 chr4 145796134 145796385 -56531962 - L1MA10 LINE L1 -1 6333 6079 234 105 0 0 chr4 145797719 145797757 -56530590 + (CA)n Simple_repeat Simple_repeat 2 39 0 2093 135 0 3 chr4 145798005 145798316 -56530031 - AluSx SINE Alu -2 310 1 264 295 13 0 chr4 145798319 145798397 -56529950 - L2 LINE L2 -83 3230 3152 275 279 0 0 chr4 145798485 145798553 -56529794 + MLT1G1 LTR MaLR 1 68 -527 * 814 323 109 30 chr4 145798551 145798979 -56529368 + MLT1G1 LTR MaLR 13 569 -26 35 71 0 0 chr4 145799013 145799083 -56529264 + AT_rich Low_complexity Low_complexity 1 70 0 355 306 39 71 chr4 145799251 145799532 -56528815 + MLT1G1-int LTR MaLR 332 603 -768 268 288 42 17 chr4 145799618 145799736 -56528611 - MLT1J LTR MaLR -150 361 241 327 327 33 13 chr4 145799755 145799908 -56528439 + MIR SINE MIR 91 246 -16 316 327 77 15 chr4 145800379 145800770 -56527577 - L1ME LINE L1 -4574 1822 1408 215 170 21 0 chr4 145800770 145800817 -56527530 + (TA)n Simple_repeat Simple_repeat 2 49 0 552 161 77 23 chr4 145800817 145800947 -56527400 - L1MC3 LINE L1 -50 7735 7599 409 156 39 0 chr4 145801058 145801133 -56527214 - MER2 DNA MER2_type -138 207 130 2858 157 40 6 chr4 145801133 145801635 -56526712 - Tigger1 DNA MER2_type 0 2418 1900 6307 142 97 50 chr4 145801638 145802380 -56525967 - L1MCa LINE L1 -3948 2478 1773 2258 71 3 32 chr4 145802380 145802691 -56525656 - AluY SINE Alu -9 302 1 6307 142 97 50 chr4 145802691 145802862 -56525485 - L1MCa LINE L1 -4653 1773 1612 1026 213 45 84 chr4 145802862 145803242 -56525105 - MLT1A1 LTR MaLR 0 365 1 6307 142 97 50 chr4 145803242 145803354 -56524993 - L1MCa LINE L1 -4814 1612 1507 204 40 0 0 chr4 145803354 145803379 -56524968 + (TTA)n Simple_repeat Simple_repeat 2 26 0 6307 142 97 50 chr4 145803379 145803874 -56524473 - L1MCa LINE L1 -4919 1507 966 180 0 0 0 chr4 145803875 145803895 -56524452 + (TG)n Simple_repeat Simple_repeat 1 20 0 1597 164 7 36 chr4 145803898 145804179 -56524168 - AluSx SINE Alu -36 276 4 2528 231 9 2 chr4 145804180 145804705 -56523642 - L1MCa LINE L1 -5880 546 18 377 294 64 76 chr4 145804950 145805698 -56522649 - L1ME LINE L1 -5056 1149 410 384 284 9 17 chr4 145805839 145805955 -56522392 - L1ME LINE L1 -5620 585 471 22 0 0 0 chr4 145807171 145807193 -56521154 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 145807888 145807909 -56520438 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr4 145809337 145809386 -56518961 + AT_rich Low_complexity Low_complexity 1 49 0 2434 163 28 4 chr4 145810084 145810557 -56517790 - L1MA4 LINE L1 -5 6295 5812 29136 126 10 58 chr4 145810573 145817043 -56511304 - L1PA8 LINE L1 -8 6164 12 4190 186 20 26 chr4 145817060 145817410 -56510937 - L1MA4 LINE L1 -463 5828 5477 1845 148 3 17 chr4 145817410 145817708 -56510639 - AluSq SINE Alu -16 297 4 4190 186 20 26 chr4 145817708 145818757 -56509590 - L1MA4 LINE L1 -814 5477 4445 2181 115 0 3 chr4 145819268 145819580 -56508767 + AluY SINE Alu 1 311 0 22 0 0 0 chr4 145820033 145820055 -56508292 + AT_rich Low_complexity Low_complexity 1 22 0 396 267 83 44 chr4 145820404 145820584 -56507763 + MIR SINE MIR 64 250 -12 344 338 40 14 chr4 145820635 145820783 -56507564 - MIR SINE MIR -36 226 75 183 42 0 0 chr4 145821111 145821135 -56507212 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1826 79 79 0 chr4 145821146 145821412 -56506935 - AluY SINE Alu -24 287 1 22 0 0 0 chr4 145823184 145823206 -56505141 + AT_rich Low_complexity Low_complexity 1 22 0 2051 107 14 0 chr4 145823840 145824129 -56504218 - AluY SINE Alu -18 293 1 349 221 58 0 chr4 145824405 145824491 -56503856 + LTR16A1 LTR ERVL 23 113 -344 1627 190 3 10 chr4 145825257 145825562 -56502785 - AluJb SINE Alu -9 303 1 388 287 172 19 chr4 145826324 145826481 -56501866 - MER5A DNA MER1_type 0 189 9 268 315 60 22 chr4 145827643 145827827 -56500520 + MLT1K LTR MaLR 394 584 -4 21 36 0 0 chr4 145827839 145827867 -56500480 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 145829098 145829120 -56499227 + AT_rich Low_complexity Low_complexity 1 22 0 332 418 96 14 chr4 145829391 145829817 -56498530 - L2 LINE L2 -4 3268 2808 1157 157 0 0 chr4 145829890 145830062 -56498285 + FRAM SINE Alu 1 168 -8 25 0 0 0 chr4 145830603 145830628 -56497719 + AT_rich Low_complexity Low_complexity 1 25 0 181 186 0 23 chr4 145831262 145831305 -56497042 + L2 LINE L2 3269 3310 -3 2392 75 0 3 chr4 145831368 145831674 -56496673 + AluY SINE Alu 1 305 -6 2090 143 3 0 chr4 145831917 145832225 -56496122 - AluSx SINE Alu -3 309 1 10902 130 31 34 chr4 145832229 145833777 -56494570 + Tigger1 DNA MER2_type 45 1599 -819 1856 164 0 10 chr4 145833777 145834061 -56494286 + AluSx SINE Alu 1 300 -12 258 0 0 29 chr4 145834061 145834095 -56494252 + (CAA)n Simple_repeat Simple_repeat 1 180 0 1856 164 0 10 chr4 145834095 145834108 -56494239 + AluSx SINE Alu 300 312 0 10902 130 31 34 chr4 145834108 145834926 -56493421 + Tigger1 DNA MER2_type 1599 2418 0 882 201 62 26 chr4 145834926 145835276 -56493071 + MSTB LTR MaLR 1 426 0 2481 221 16 21 chr4 145835276 145835846 -56492501 + MSTB-int LTR MaLR 1 567 -1084 436 298 114 16 chr4 145836670 145837147 -56491200 + L1ME LINE L1 1124 1726 -4837 592 292 54 41 chr4 145837166 145837512 -56490835 + L1ME LINE L1 5112 5468 -930 1711 193 3 0 chr4 145837512 145837817 -56490530 + AluSx SINE Alu 1 306 -6 592 292 54 41 chr4 145837817 145838133 -56490214 + L1ME LINE L1 5468 5778 -620 8225 215 54 9 chr4 145838272 145840412 -56487935 + L1 LINE L1 3064 5299 -847 385 303 105 0 chr4 145841149 145841301 -56487046 + MIR SINE MIR 63 230 -32 23 33 0 0 chr4 145841738 145841768 -56486579 + AT_rich Low_complexity Low_complexity 1 30 0 36 104 0 0 chr4 145842658 145842792 -56485555 + AT_rich Low_complexity Low_complexity 1 134 0 727 112 15 22 chr4 145843782 145843916 -56484431 - L1MA5 LINE L1 0 6300 6168 835 204 46 158 chr4 145844352 145844895 -56483452 - L1MDa LINE L1 -2977 3563 3082 2204 147 23 0 chr4 145844895 145845248 -56483099 + THE1B LTR MaLR 1 361 -3 10096 115 47 9 chr4 145845277 145846799 -56481548 + THE1B-int LTR MaLR 1 1580 0 2167 152 22 0 chr4 145846799 145847155 -56481192 + THE1B LTR MaLR 1 364 0 972 242 76 18 chr4 145847155 145847498 -56480849 - L1MDa LINE L1 -3454 3086 2724 934 217 125 14 chr4 145847522 145847890 -56480457 - L1MDa LINE L1 -3890 2650 2242 1314 221 110 3 chr4 145847907 145848215 -56480132 + MSTD LTR MaLR 56 396 0 2414 259 72 18 chr4 145848215 145849522 -56478825 + L1MD2 LINE L1 1435 2817 -3723 * 4642 248 67 56 chr4 145849519 145851598 -56476749 + L1MD2 LINE L1 3192 5247 -1506 246 32 0 0 chr4 145851598 145851629 -56476718 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 415 182 0 0 chr4 145851630 145851696 -56476651 + AluJ/FLAM SINE Alu 1 66 -236 4642 248 67 56 chr4 145851696 145852043 -56476304 + L1MD2 LINE L1 5247 5589 -1164 1883 134 0 19 chr4 145852043 145852350 -56475997 + AluSc SINE Alu 5 305 -4 4642 248 67 56 chr4 145852350 145853367 -56474980 + L1MD2 LINE L1 5589 6745 -8 341 310 28 35 chr4 145853504 145853646 -56474701 + MIR SINE MIR 2 142 -120 527 258 13 7 chr4 145854069 145854224 -56474123 + MIR SINE MIR 81 236 -26 265 213 0 0 chr4 145854668 145854715 -56473632 + MER20 DNA MER1_type 29 75 -144 26 0 0 0 chr4 145854948 145854974 -56473373 + AT_rich Low_complexity Low_complexity 1 26 0 32 0 0 0 chr4 145855044 145855076 -56473271 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr4 145855120 145855155 -56473192 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 145855272 145855294 -56473053 + AT_rich Low_complexity Low_complexity 1 22 0 1578 242 31 117 chr4 145855356 145856005 -56472342 + MLT1E LTR MaLR 1 593 0 1781 177 44 6 chr4 145856796 145857157 -56471190 + THE1C LTR MaLR 1 375 0 1820 164 17 93 chr4 145857318 145857739 -56470608 - MLT2C1 LTR ERVL -8 389 1 23 54 0 0 chr4 145857884 145857921 -56470426 + AT_rich Low_complexity Low_complexity 1 37 0 212 358 17 17 chr4 145858108 145858228 -56470119 - L2 LINE L2 -6 3307 3188 231 299 86 68 chr4 145858233 145858350 -56469997 + MIR3 SINE MIR 59 177 -31 24 0 0 0 chr4 145858899 145858923 -56469424 + AT_rich Low_complexity Low_complexity 1 24 0 585 222 85 28 chr4 145859975 145860151 -56468196 - MER5A DNA MER1_type -1 188 3 23 0 0 0 chr4 145861161 145861184 -56467163 + AT_rich Low_complexity Low_complexity 1 23 0 206 344 31 52 chr4 145861450 145861546 -56466801 - MIR SINE MIR -120 142 49 1724 167 145 5 chr4 145862181 145862553 -56465794 + MSTA LTR MaLR 1 424 -4 22 35 0 0 chr4 145862915 145862944 -56465403 + AT_rich Low_complexity Low_complexity 1 29 0 560 125 0 0 chr4 145864348 145864436 -56463911 - L1MB5 LINE L1 -8 6166 6079 27 0 0 0 chr4 145864899 145864926 -56463421 + AT_rich Low_complexity Low_complexity 1 27 0 1189 149 69 58 chr4 145865074 145865335 -56463012 + MER21A LTR ERV1 1 264 -667 2475 181 88 21 chr4 145865341 145865861 -56462486 + MER21A LTR ERV1 377 931 0 33 43 0 0 chr4 145867306 145867353 -56460994 + AT_rich Low_complexity Low_complexity 1 47 0 1666 258 60 2 chr4 145867353 145867784 -56460563 - MLT2B1 LTR ERVL -64 456 1 275 245 21 32 chr4 145867800 145867894 -56460453 + L1MEd LINE L1 971 1063 -5056 22 0 0 0 chr4 145868097 145868119 -56460228 + AT_rich Low_complexity Low_complexity 1 22 0 341 269 114 26 chr4 145868693 145868886 -56459461 + L1MEd LINE L1 2914 3123 -3006 385 285 99 2 chr4 145869046 145869258 -56459089 + L1ME3 LINE L1 5705 5936 -234 480 314 55 28 chr4 145869273 145869528 -56458819 + L2 LINE L2 527 788 -2526 1243 287 228 3 chr4 145869659 145870247 -56458100 + L2 LINE L2 1384 2103 -1211 1435 174 16 114 chr4 145870274 145870659 -56457688 + MER7A DNA MER2_type 2 346 0 639 276 81 68 chr4 145870662 145870970 -56457377 + L2 LINE L2 2143 2454 -860 439 270 32 140 chr4 145870972 145871287 -56457060 + L2 LINE L2 2585 2865 -449 444 304 14 58 chr4 145871401 145871608 -56456739 + L2 LINE L2 3116 3313 0 1870 268 94 21 chr4 145872101 145872813 -56455534 - L1MEc LINE L1 -5587 809 46 212 330 0 21 chr4 145872880 145872977 -56455370 + CT-rich Low_complexity Low_complexity 2 96 0 22 0 0 0 chr4 145873301 145873323 -56455024 + AT_rich Low_complexity Low_complexity 1 22 0 344 310 98 48 chr4 145874001 145874336 -56454011 + L1M4 LINE L1 4357 4708 -1438 311 316 18 9 chr4 145874639 145874753 -56453594 + CT-rich Low_complexity Low_complexity 6 120 0 1170 223 34 17 chr4 145875621 145875859 -56452488 + REP3 LTR ERV 1 242 -320 239 239 194 0 chr4 145876034 145876101 -56452246 + REP3 LTR ERV 483 562 0 396 190 0 0 chr4 145876407 145876486 -56451861 + (TA)n Simple_repeat Simple_repeat 2 80 0 203 61 30 0 chr4 145876549 145876582 -56451765 + (TA)n Simple_repeat Simple_repeat 1 34 0 228 174 0 0 chr4 145876590 145876636 -56451711 - LTR66 LTR ERVL -171 439 394 1783 162 0 26 chr4 145876646 145876948 -56451399 - AluJb SINE Alu -14 298 5 267 361 16 8 chr4 145877122 145877244 -56451103 + L2 LINE L2 3190 3312 -1 189 107 0 0 chr4 145877255 145877283 -56451064 + (CATAA)n Simple_repeat Simple_repeat 2 29 0 2252 225 42 0 chr4 145877405 145877902 -56450445 + MLT2B1 LTR ERVL 3 520 0 8181 106 30 39 chr4 145878168 145879399 -56448948 - HSMAR1 DNA Mariner 0 1287 67 2344 67 0 10 chr4 145879399 145879696 -56448651 + AluY SINE Alu 1 294 -17 8181 106 30 39 chr4 145879696 145879763 -56448584 - HSMAR1 DNA Mariner -1220 67 1 1266 246 101 12 chr4 145880577 145880995 -56447352 + MLT1C LTR MaLR 12 466 -1 1197 330 127 20 chr4 145881285 145881885 -56446462 - L2 LINE L2 -1537 1777 1114 21 0 0 0 chr4 145883666 145883687 -56444660 + AT_rich Low_complexity Low_complexity 1 21 0 211 328 16 16 chr4 145884510 145884574 -56443773 - MIR SINE MIR -55 153 90 274 357 20 52 chr4 145886097 145886349 -56441998 - MIR SINE MIR -3 259 16 252 384 17 43 chr4 145886451 145886683 -56441664 + L2 LINE L2 2748 2973 -341 1483 229 83 7 chr4 145886755 145887166 -56441181 - L1MD2 LINE L1 -4 6355 5914 257 238 88 25 chr4 145887217 145887297 -56441050 - L1MC3 LINE L1 -14 7771 7687 5582 79 60 3 chr4 145887476 145888257 -56440090 - LTR12 LTR ERV1 0 826 1 1923 179 34 65 chr4 145888356 145888425 -56439922 - Tigger2a DNA MER2_type -2274 434 364 1914 116 4 4 chr4 145888425 145888692 -56439655 + AluSx SINE Alu 1 267 -45 1923 179 34 65 chr4 145888692 145889070 -56439277 - Tigger2a DNA MER2_type -2344 364 1 2439 175 24 18 chr4 145889391 145889899 -56438448 - L1MA7 LINE L1 0 6291 5781 4557 131 32 3 chr4 145889899 145890625 -56437722 - Tigger1 DNA MER2_type -5 2413 1667 2567 143 39 2 chr4 145890618 145891058 -56437289 - Tigger1 DNA MER2_type -1961 457 2 * 8419 201 43 20 chr4 145891058 145893509 -56434838 - L1MA7 LINE L1 -503 5788 3287 21 0 0 0 chr4 145893695 145893716 -56434631 + AT_rich Low_complexity Low_complexity 1 21 0 386 324 88 6 chr4 145893955 145894125 -56434222 - MIR SINE MIR 0 262 79 211 227 23 0 chr4 145894174 145894218 -56434129 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 4169 172 58 32 chr4 145895063 145895963 -56432384 + L1MB4 LINE L1 5258 6180 0 4630 189 93 101 chr4 145896011 145896578 -56431769 - L1MC3 LINE L1 -22 7763 7193 272 330 0 0 chr4 145896578 145896669 -56431678 - MLT1F1 LTR MaLR -442 125 35 4630 189 93 101 chr4 145896669 145897564 -56430783 - L1MC3 LINE L1 -592 7193 6222 307 248 91 16 chr4 145897567 145897688 -56430659 - L2 LINE L2 -263 3050 2921 181 250 39 0 chr4 145897802 145897854 -56430493 - MER5A DNA MER1_type 0 189 136 592 219 126 7 chr4 145898410 145898561 -56429786 + MIR SINE MIR 2 170 -92 355 316 102 46 chr4 145899433 145899806 -56428541 - HAL1 LINE L1 -1918 589 196 21 0 0 0 chr4 145900256 145900277 -56428070 + AT_rich Low_complexity Low_complexity 1 21 0 302 338 98 19 chr4 145900927 145901244 -56427103 - L2 LINE L2 -778 2536 2195 24 32 0 0 chr4 145901258 145901289 -56427058 + AT_rich Low_complexity Low_complexity 1 31 0 25 65 0 0 chr4 145902612 145902658 -56425689 + AT_rich Low_complexity Low_complexity 1 46 0 192 294 69 20 chr4 145903475 145903577 -56424770 + MIR SINE MIR 132 238 -24 4039 191 29 12 chr4 145904819 145906601 -56421746 + L1MA10 LINE L1 4446 6299 -35 213 340 113 0 chr4 145906792 145906898 -56421449 - MIR SINE MIR -9 253 136 758 267 130 38 chr4 145907119 145907472 -56420875 - MLT1G1 LTR MaLR -242 348 1 773 204 54 0 chr4 145907618 145907785 -56420562 + MER3 DNA MER1_type 1 129 -80 2244 129 39 8 chr4 145907797 145908161 -56420186 + THE1C LTR MaLR 1 375 0 22 56 0 0 chr4 145908382 145908418 -56419929 + AT_rich Low_complexity Low_complexity 1 36 0 469 350 55 0 chr4 145908697 145908860 -56419487 - MER5B DNA MER1_type -3 175 4 2241 110 0 0 chr4 145909191 145909492 -56418855 - AluSp SINE Alu -10 303 3 24 0 0 0 chr4 145909499 145909523 -56418824 + AT_rich Low_complexity Low_complexity 1 24 0 512 280 62 43 chr4 145910544 145910755 -56417592 - MLT1L LTR MaLR -373 242 28 277 254 25 14 chr4 145910766 145910885 -56417462 - MER5A DNA MER1_type 0 189 10 21 36 0 0 chr4 145911301 145911329 -56417018 + AT_rich Low_complexity Low_complexity 1 28 0 27 49 0 0 chr4 145911365 145911406 -56416941 + AT_rich Low_complexity Low_complexity 1 41 0 3801 156 28 28 chr4 145911836 145912547 -56415800 + MER50 LTR ERV1 1 711 -23 331 323 32 0 chr4 145912880 145912973 -56415374 + L2 LINE L2 3213 3308 -5 645 290 114 33 chr4 145913909 145914216 -56414131 + MLT1J2 LTR MaLR 115 446 -4 245 250 42 14 chr4 145914429 145914501 -56413846 - MIR SINE MIR -71 191 118 656 126 4 97 chr4 145914896 145915134 -56413213 + AluY SINE Alu 1 216 -95 1507 55 0 25 chr4 145915304 145915503 -56412844 + AluY SINE Alu 110 303 -8 22 88 0 0 chr4 145916943 145917000 -56411347 + AT_rich Low_complexity Low_complexity 1 57 0 23 33 0 0 chr4 145917246 145917276 -56411071 + AT_rich Low_complexity Low_complexity 1 30 0 282 92 92 0 chr4 145918719 145918784 -56409563 + T-rich Low_complexity Low_complexity 5 75 0 861 237 202 0 chr4 145918788 145919041 -56409306 - AluJb SINE Alu -5 307 4 34 42 0 0 chr4 145919598 145919646 -56408701 + AT_rich Low_complexity Low_complexity 1 48 0 1701 149 119 12 chr4 145919716 145920052 -56408295 + THE1C LTR MaLR 1 372 -3 9663 114 71 8 chr4 145920055 145921541 -56406806 + THE1C-int LTR MaLR 1 1580 0 1876 156 40 32 chr4 145921541 145921913 -56406434 + THE1C LTR MaLR 1 375 0 243 272 37 0 chr4 145922479 145922560 -56405787 + L1MC5 LINE L1 6985 7068 -893 1777 174 55 14 chr4 145922565 145922928 -56405419 + MLT1B LTR MaLR 6 383 -7 328 259 111 86 chr4 145923256 145923851 -56404496 + L1MC5 LINE L1 7303 7912 -49 1119 199 24 31 chr4 145923984 145924548 -56403799 + L1MA7 LINE L1 3623 4335 -1811 262 269 108 0 chr4 145924630 145924723 -56403624 - HAL1 LINE L1 -671 1836 1734 386 191 0 0 chr4 145924728 145924796 -56403551 + Tigger2 DNA MER2_type 2 69 -2649 361 242 0 0 chr4 145924809 145924875 -56403472 + Tigger2 DNA MER2_type 2653 2718 0 4915 177 34 46 chr4 145924881 145925256 -56403091 + L1MA7 LINE L1 4339 4717 -1574 1461 222 6 16 chr4 145925256 145925571 -56402776 + AluJo SINE Alu 1 312 0 4915 177 34 46 chr4 145925571 145925882 -56402465 + L1MA7 LINE L1 4717 5030 -1261 776 95 9 0 chr4 145925882 145925998 -56402349 + L1PB1 LINE L1 6035 6151 0 4915 177 34 46 chr4 145925998 145927297 -56401050 + L1MA7 LINE L1 5030 6285 -6 23 0 0 0 chr4 145928529 145928552 -56399795 + AT_rich Low_complexity Low_complexity 1 23 0 487 318 81 0 chr4 145928684 145928857 -56399490 - MIR SINE MIR -72 190 4 216 97 0 0 chr4 145929506 145929537 -56398810 + (TC)n Simple_repeat Simple_repeat 2 32 0 270 0 0 0 chr4 145929540 145929570 -56398777 + (CA)n Simple_repeat Simple_repeat 2 31 0 1438 254 116 22 chr4 145930964 145931472 -56396875 + MLT1E2 LTR MaLR 19 574 -52 21 0 0 0 chr4 145932005 145932026 -56396321 + AT_rich Low_complexity Low_complexity 1 21 0 2304 142 77 12 chr4 145932331 145932762 -56395585 - MER65C LTR ERV1 0 461 3 22 0 0 0 chr4 145932923 145932945 -56395402 + AT_rich Low_complexity Low_complexity 1 22 0 197 0 0 67 chr4 145933193 145933223 -56395124 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 361 242 89 111 chr4 145933376 145933478 -56394869 + MLT1I LTR MaLR 220 318 -91 1436 197 7 33 chr4 145933478 145933777 -56394570 - AluJo SINE Alu -20 292 2 361 242 89 111 chr4 145933777 145933864 -56394483 + MLT1I LTR MaLR 318 405 -4 236 280 35 70 chr4 145934329 145934404 -56393943 - HAL1 LINE L1 -1940 567 498 1084 253 33 27 chr4 145934404 145934772 -56393575 + MLT1A2 LTR MaLR 1 370 -4 236 280 35 70 chr4 145934772 145934839 -56393508 - HAL1 LINE L1 -2009 498 430 1189 204 83 8 chr4 145934883 145935148 -56393199 - MLT1C LTR MaLR 0 467 183 252 0 0 0 chr4 145935159 145935187 -56393160 + (TG)n Simple_repeat Simple_repeat 2 29 0 1014 251 86 23 chr4 145935187 145935708 -56392639 - L1MD3 LINE L1 -20 7975 5755 2470 232 30 55 chr4 145935734 145937058 -56391289 - L1MDa LINE L1 -2948 3592 2307 253 295 39 0 chr4 145937079 145937157 -56391190 + L1MD2 LINE L1 6023 6103 -256 261 180 82 0 chr4 145937689 145937750 -56390597 + MLT1E2 LTR MaLR 38 103 -523 910 123 0 0 chr4 145937777 145937915 -56390432 - L1PA8 LINE L1 -7 6165 6028 6399 105 8 15 chr4 145938015 145938434 -56389913 - L1PA8A LINE L1 -352 5779 5359 2167 123 0 0 chr4 145938434 145938734 -56389613 - AluSg SINE Alu -10 300 1 6399 105 8 15 chr4 145938734 145939737 -56388610 - L1PA8A LINE L1 -772 5359 4365 264 224 15 0 chr4 145940523 145940590 -56387757 + MER82 DNA MER2_type 10 77 -576 714 154 24 0 chr4 145940596 145940719 -56387628 + FLAM_C SINE Alu 1 126 -17 194 0 39 0 chr4 145940833 145940859 -56387488 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 2050 101 0 4 chr4 145940862 145941139 -56387208 - AluSg SINE Alu -34 276 1 234 367 68 23 chr4 145941613 145941790 -56386557 - MIR SINE MIR -58 204 20 402 181 29 0 chr4 145942224 145942329 -56386018 + (TA)n Simple_repeat Simple_repeat 2 109 0 241 272 11 33 chr4 145942329 145942421 -56385926 - L1MC4 LINE L1 -1339 6703 6614 * 246 282 24 0 chr4 145942396 145942481 -56385866 + L1MC4 LINE L1 6617 6703 -1339 * 285 213 11 32 chr4 145942449 145942543 -56385804 - L1MC4 LINE L1 -1339 6703 6612 282 292 0 0 chr4 145942552 145942641 -56385706 + L1MC4 LINE L1 6614 6702 -1340 * 295 244 47 0 chr4 145942608 145942694 -56385653 - L1MC4 LINE L1 -1339 6703 6614 224 244 38 0 chr4 145942711 145942842 -56385505 + (TATATG)n Simple_repeat Simple_repeat 3 138 0 270 307 23 0 chr4 145942842 145942930 -56385417 + (CATA)n Simple_repeat Simple_repeat 1 90 0 462 339 23 0 chr4 145942941 145943115 -56385232 + (CATA)n Simple_repeat Simple_repeat 3 180 0 272 286 17 11 chr4 145943175 145943350 -56384997 + (CATA)n Simple_repeat Simple_repeat 3 178 0 183 317 21 0 chr4 145943361 145943506 -56384841 + (CATA)n Simple_repeat Simple_repeat 3 150 0 209 266 5 49 chr4 145943595 145943779 -56384568 + (CATA)n Simple_repeat Simple_repeat 3 178 0 243 266 11 21 chr4 145943781 145943875 -56384472 + L1MC4 LINE L1 6617 6709 -1333 1024 245 171 10 chr4 145944053 145944486 -56383861 - L1MC4 LINE L1 -7 7901 7369 277 260 96 0 chr4 145944517 145944621 -56383726 - L1MC4 LINE L1 -642 7400 7287 1446 233 27 27 chr4 145944686 145945060 -56383287 - L1MC4 LINE L1 -969 7073 6700 434 259 71 29 chr4 145945465 145945635 -56382712 - Charlie8 DNA MER1_type -2164 253 77 210 333 28 46 chr4 145945830 145945938 -56382409 - L2 LINE L2 0 3313 3208 608 146 38 7 chr4 145946021 145946453 -56381894 + (TA)n Simple_repeat Simple_repeat 1 445 0 237 345 67 12 chr4 145947249 145947414 -56380933 - L2 LINE L2 -457 2857 2684 23 86 0 0 chr4 145947506 145947564 -56380783 + AT_rich Low_complexity Low_complexity 1 58 0 23 54 0 0 chr4 145948566 145948603 -56379744 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 145948770 145948805 -56379542 + AT_rich Low_complexity Low_complexity 1 35 0 1844 196 8 50 chr4 145948813 145949212 -56379135 + MLT1B LTR MaLR 1 382 -8 21 36 0 0 chr4 145949463 145949491 -56378856 + AT_rich Low_complexity Low_complexity 1 28 0 265 273 121 28 chr4 145951058 145951323 -56377024 + L1MC1 LINE L1 1119 1531 -5116 222 292 17 92 chr4 145951565 145951685 -56376662 - L2 LINE L2 -783 2531 2421 301 251 11 120 chr4 145951688 145951863 -56376484 - L2 LINE L2 0 3313 3158 894 215 27 5 chr4 145952229 145952452 -56375895 + L1MC1 LINE L1 4959 5186 -1458 1283 173 0 118 chr4 145952553 145952883 -56375464 + AluJb SINE Alu 5 295 -7 965 195 39 15 chr4 145952899 145953104 -56375243 - MER2 DNA MER2_type -135 210 1 3192 187 32 24 chr4 145953195 145954290 -56374057 + L1MC1 LINE L1 5256 6360 -471 1327 69 0 0 chr4 145954472 145954646 -56373701 + LTR12 LTR ERV1 541 714 0 291 301 48 10 chr4 145954728 145954831 -56373516 - MIR SINE MIR -82 180 74 250 274 95 11 chr4 145954959 145955054 -56373293 + L1MC4 LINE L1 5439 5541 -2267 338 215 29 168 chr4 145955123 145955209 -56373138 + MER104 DNA Tc2 1 43 -1855 2344 97 0 3 chr4 145955209 145955520 -56372827 - AluY SINE Alu -1 310 1 338 215 29 168 chr4 145955520 145955642 -56372705 + MER104 DNA Tc2 43 180 0 320 303 22 0 chr4 145956551 145956640 -56371707 - L1MC4 LINE L1 -1334 6708 6618 316 239 45 23 chr4 145956664 145956752 -56371595 - L1MC4 LINE L1 -1339 6703 6614 302 284 0 42 chr4 145956673 145956768 -56371579 + L1MC4 LINE L1 6617 6707 -1335 * 279 294 126 35 chr4 145958873 145959104 -56369243 - L1ME LINE L1 -487 5634 5383 543 96 0 0 chr4 145959181 145959254 -56369093 - MADE1 DNA Mariner 0 80 8 226 270 0 34 chr4 145959319 145959408 -56368939 + A-rich Low_complexity Low_complexity 4 89 0 721 311 72 0 chr4 145959682 145959917 -56368430 + MIR SINE MIR 11 262 0 23 92 0 0 chr4 145960192 145960257 -56368090 + AT_rich Low_complexity Low_complexity 1 65 0 1222 143 34 46 chr4 145960770 145961007 -56367340 + AluSp SINE Alu 1 234 -79 1357 220 120 11 chr4 145961034 145961402 -56366945 - MSTB1 LTR MaLR -24 408 1 316 312 50 28 chr4 145961434 145961575 -56366772 + L2 LINE L2 3163 3306 -7 263 271 167 0 chr4 145961847 145961943 -56366404 - L1ME LINE L1 -281 5889 5778 1035 237 109 15 chr4 145961948 145962286 -56366061 + MLT1A2 LTR MaLR 5 374 0 321 301 19 13 chr4 145962451 145962607 -56365740 - L1ME LINE L1 -2339 5469 5313 376 333 94 4 chr4 145962670 145962937 -56365410 - L1ME LINE L1 -914 5232 4942 26 0 0 0 chr4 145962992 145963018 -56365329 + AT_rich Low_complexity Low_complexity 1 26 0 235 368 46 48 chr4 145963434 145963828 -56364519 + MLT1K LTR MaLR 168 560 -28 477 0 0 0 chr4 145964201 145964254 -56364093 + (TG)n Simple_repeat Simple_repeat 2 54 0 1079 267 60 55 chr4 145964549 145964798 -56363549 - MLT1D LTR MaLR -69 436 183 2113 114 27 0 chr4 145964798 145965095 -56363252 - AluSx SINE Alu -7 305 1 1079 267 60 55 chr4 145965095 145965279 -56363068 - MLT1D LTR MaLR -322 183 1 11694 165 68 23 chr4 145965676 145965923 -56362424 - L1PBa LINE L1 -1896 4966 4732 2216 101 0 3 chr4 145965923 145966219 -56362128 - AluSq SINE Alu -18 295 1 11694 165 68 23 chr4 145966219 145968485 -56359862 - L1PBa LINE L1 -2130 4732 2199 840 62 0 9 chr4 145968485 145968597 -56359750 - L1PA7 LINE L1 0 6154 6044 11694 165 68 23 chr4 145968597 145970246 -56358101 - L1PBa LINE L1 -4663 2199 625 1079 159 5 0 chr4 145970243 145970432 -56357915 - L1PBa LINE L1 -6668 195 6 * 354 296 52 58 chr4 145971547 145971719 -56356628 - L1ME3A LINE L1 -38 6132 5962 249 271 49 41 chr4 145972086 145972208 -56356139 - L1ME LINE L1 -5946 124 2 2225 121 116 13 chr4 145972273 145972661 -56355686 + MSTA LTR MaLR 1 428 0 330 317 41 7 chr4 145973048 145973193 -56355154 - L1ME3A LINE L1 -533 5637 5488 23 33 0 0 chr4 145974690 145974720 -56353627 + AT_rich Low_complexity Low_complexity 1 30 0 1361 230 7 7 chr4 145975335 145975622 -56352725 + AluJo SINE Alu 1 287 -15 226 243 14 0 chr4 145975679 145975753 -56352594 + (TA)n Simple_repeat Simple_repeat 1 75 0 320 329 26 51 chr4 145975826 145976060 -56352287 - L2 LINE L2 -493 2821 2594 202 316 203 0 chr4 145976439 145976572 -56351775 + MIR SINE MIR 97 256 -6 1683 153 51 77 chr4 145976699 145977052 -56351295 - MER7A DNA MER2_type -4 342 1 380 109 0 16 chr4 145978109 145978173 -56350174 + (TC)n Simple_repeat Simple_repeat 2 64 0 212 276 69 35 chr4 145978533 145978620 -56349727 + MIR3 SINE MIR 89 178 -30 357 215 0 0 chr4 145981005 145981098 -56347249 + (TA)n Simple_repeat Simple_repeat 2 94 0 200 211 0 0 chr4 145981145 145981183 -56347164 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 259 317 89 8 chr4 145983519 145983642 -56344705 + MIR SINE MIR 102 234 -28 886 243 46 41 chr4 145983712 145984024 -56344323 - LTR37A LTR ERV1 -12 414 98 2240 102 0 3 chr4 145984024 145984317 -56344030 + AluSg SINE Alu 1 292 -18 886 243 46 41 chr4 145984317 145984370 -56343977 - LTR37A LTR ERV1 -328 98 47 5039 151 27 13 chr4 145984649 145986395 -56341952 - L1PA16 LINE L1 -1 6165 4405 1178 280 32 85 chr4 145986433 145986634 -56341713 - MER31-int LTR ERV1 -839 4097 3887 3325 111 26 12 chr4 145986634 145987138 -56341209 - MER9 LTR ERVK 0 511 1 1178 280 32 85 chr4 145987138 145987750 -56340597 - MER31-int LTR ERV1 -1049 3887 3327 381 284 35 86 chr4 145988156 145988504 -56339843 - MER31-int LTR ERV1 -1949 2987 2658 261 180 20 0 chr4 145988908 145988958 -56339389 + Charlie1 DNA MER1_type 50 100 -2661 * 492 224 93 58 chr4 145988936 145989141 -56339206 + Charlie1 DNA MER1_type 2550 2761 0 23 33 0 0 chr4 145989666 145989696 -56338651 + AT_rich Low_complexity Low_complexity 1 30 0 305 234 51 109 chr4 145989970 145990226 -56338121 - MER31-int LTR ERV1 -3642 1294 1054 921 195 51 38 chr4 145990590 145990882 -56337465 - LTR37A LTR ERV1 -74 352 57 2047 118 14 0 chr4 145991874 145992163 -56336184 + AluSc SINE Alu 1 293 -16 354 306 10 0 chr4 145992752 145992850 -56335497 - MIR SINE MIR -93 169 71 23 33 0 0 chr4 145992860 145992890 -56335457 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 145993750 145993773 -56334574 + AT_rich Low_complexity Low_complexity 1 23 0 224 216 250 0 chr4 145994015 145994103 -56334244 + L2 LINE L2 2292 2401 -913 868 306 90 65 chr4 145994113 145994828 -56333519 + L2 LINE L2 2550 3313 0 1837 178 162 120 chr4 145995635 145995961 -56332386 - L1MC3 LINE L1 -261 7524 7213 241 288 12 12 chr4 145995961 145996041 -56332306 - MLT1F1 LTR MaLR -450 117 38 1837 178 162 120 chr4 145996041 145996427 -56331920 - L1MC3 LINE L1 -572 7213 6700 930 237 63 36 chr4 145996425 145996876 -56331471 - L1MD2 LINE L1 -278 5884 5429 * 198 167 0 0 chr4 145996901 145996937 -56331410 + GA-rich Low_complexity Low_complexity 1 36 0 392 337 55 17 chr4 145997167 145997348 -56330999 + L2 LINE L2 3118 3305 -8 23 33 0 0 chr4 145997643 145997673 -56330674 + AT_rich Low_complexity Low_complexity 1 30 0 336 175 0 0 chr4 146000239 146000302 -56328045 + (TA)n Simple_repeat Simple_repeat 2 64 0 204 146 0 24 chr4 146001052 146001093 -56327254 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 1144 189 16 117 chr4 146001789 146002165 -56326182 + MLT1A1 LTR MaLR 28 365 0 370 271 0 10 chr4 146002166 146002262 -56326085 + MLT1A1-int LTR MaLR 3 97 -1554 * 5038 176 36 8 chr4 146002259 146004130 -56324217 - L1MA7 LINE L1 -5 6286 4373 2628 252 127 13 chr4 146004170 146004920 -56323427 + MLT1A1-int LTR MaLR 901 1735 0 1106 187 27 117 chr4 146004920 146005321 -56323026 + MLT1A1 LTR MaLR 1 365 0 534 301 65 35 chr4 146005351 146005749 -56322598 + L1MC/D LINE L1 5330 5739 -2069 21 0 0 0 chr4 146006106 146006127 -56322220 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr4 146007242 146007266 -56321081 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 597 281 90 43 chr4 146007387 146007686 -56320661 - LTR53 LTR ERVL -2 517 205 2745 175 40 6 chr4 146007886 146008388 -56319959 + MER44D DNA MER2_type 2 575 -30 1954 174 39 33 chr4 146008409 146008956 -56319391 - MLT2A2 LTR ERVL 0 554 1 2153 99 10 10 chr4 146009567 146009859 -56318488 + AluSx SINE Alu 11 302 -10 351 273 116 0 chr4 146010663 146010784 -56317563 + MIR SINE MIR 87 221 -41 3628 126 37 69 chr4 146010791 146011459 -56316888 + LTR8 LTR ERV1 1 647 -44 186 103 0 0 chr4 146011493 146011522 -56316825 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1829 177 119 58 chr4 146011522 146012087 -56316260 - LTR38B LTR ERV1 -1 609 11 13535 202 6 2 chr4 146012855 146015287 -56313060 - HERVE LTR ERV1 -4390 3423 983 311 175 12 88 chr4 146015394 146015474 -56312873 + HAL1 LINE L1 859 932 -1575 30 77 0 0 chr4 146015482 146015547 -56312800 + AT_rich Low_complexity Low_complexity 1 65 0 1074 269 71 64 chr4 146015586 146016193 -56312154 + HAL1 LINE L1 1106 1716 -791 1171 234 43 129 chr4 146016193 146016752 -56311595 + MLT2B1 LTR ERVL 2 512 -8 501 289 92 46 chr4 146016756 146017061 -56311286 + HAL1 LINE L1 1711 2029 -478 1758 134 78 0 chr4 146017093 146017377 -56310970 + AluSq SINE Alu 1 306 -7 3378 126 32 53 chr4 146017630 146018539 -56309808 - pTR5 LTR ERV1 0 2220 6 450 0 0 0 chr4 146018899 146018949 -56309398 + (TGG)n Simple_repeat Simple_repeat 3 52 0 1713 135 4 23 chr4 146018959 146019096 -56309251 - AluSq SINE Alu -52 261 130 381 43 0 0 chr4 146019096 146019143 -56309204 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1713 135 4 23 chr4 146019143 146019271 -56309076 - AluSq SINE Alu -183 130 1 285 214 87 32 chr4 146019878 146020004 -56308343 + L1ME LINE L1 5298 5430 -740 24 85 0 0 chr4 146020677 146020736 -56307611 + AT_rich Low_complexity Low_complexity 1 59 0 1839 234 79 2 chr4 146021783 146022265 -56306082 + LTR40a LTR ERVL 1 519 0 254 295 67 0 chr4 146022275 146022380 -56305967 + HERVL40 LTR ERVL 14 125 -5405 218 276 26 0 chr4 146022423 146022499 -56305848 + GA-rich Low_complexity Low_complexity 2 79 0 692 115 0 0 chr4 146022512 146022616 -56305731 - AluY SINE Alu -13 298 195 2296 81 0 0 chr4 146022616 146022912 -56305435 - AluY SINE Alu -15 296 1 313 239 33 11 chr4 146023984 146024076 -56304271 + (CATATA)n Simple_repeat Simple_repeat 6 99 0 203 289 58 0 chr4 146024789 146024841 -56303506 - L2 LINE L2 -13 3259 3205 1523 91 14 0 chr4 146026019 146026227 -56302120 - AluSg/x SINE Alu -14 295 85 716 340 59 42 chr4 146026388 146026498 -56301849 - ERVL LTR ERVL -1831 3933 3826 2113 117 32 67 chr4 146026498 146026873 -56301474 + THE1B LTR MaLR 1 362 -2 716 340 59 42 chr4 146026873 146027477 -56300870 - ERVL LTR ERVL -1938 3826 3207 385 333 8 8 chr4 146027547 146027667 -56300680 - ERVL LTR ERVL -1932 3064 2945 1471 336 56 30 chr4 146027686 146029178 -56299169 - ERVL LTR ERVL -2759 2237 1263 530 335 43 0 chr4 146029208 146029441 -56298906 - ERVL LTR ERVL -3800 1196 954 273 314 107 35 chr4 146029696 146029865 -56298482 - ERVL LTR ERVL -4423 573 393 4515 185 24 20 chr4 146029938 146030062 -56298285 + L1PB4 LINE L1 4292 4414 -1742 2232 108 10 0 chr4 146030062 146030358 -56297989 + AluSx SINE Alu 1 299 -13 4515 185 24 20 chr4 146030358 146032091 -56296256 + L1PB4 LINE L1 4414 6141 -15 23 0 0 0 chr4 146032266 146032289 -56296058 + AT_rich Low_complexity Low_complexity 1 23 0 498 232 32 8 chr4 146032476 146032601 -56295746 - MER94 DNA DNA -6 128 1 254 277 155 26 chr4 146032710 146032865 -56295482 - MIR SINE MIR -57 205 31 2356 88 0 0 chr4 146033171 146033476 -56294871 + AluY SINE Alu 7 311 0 666 47 0 0 chr4 146033506 146033592 -56294755 + AluY SINE Alu 218 303 -8 1069 173 0 48 chr4 146033867 146034138 -56294209 + pTR5 LTR ERV1 741 998 -1440 1749 172 7 0 chr4 146034239 146034512 -56293835 - AluSx SINE Alu -37 275 1 2279 81 7 3 chr4 146035857 146036167 -56292180 + AluY SINE Alu 1 311 0 22 0 0 0 chr4 146036414 146036436 -56291911 + AT_rich Low_complexity Low_complexity 1 22 0 1708 186 3 13 chr4 146037315 146037626 -56290721 + AluSq SINE Alu 1 308 -5 1349 250 0 0 chr4 146038920 146039208 -56289139 - AluJo SINE Alu -24 288 1 2329 181 22 7 chr4 146039230 146039640 -56288707 + MSTB LTR MaLR 1 416 -10 9132 186 18 3 chr4 146039649 146041103 -56287244 + MSTB-int LTR MaLR 1 1483 -168 207 0 0 0 chr4 146041103 146041126 -56287221 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 9132 186 18 3 chr4 146041126 146041291 -56287056 + MSTB-int LTR MaLR 1483 1644 -7 2385 161 24 24 chr4 146041301 146041724 -56286623 + MSTB LTR MaLR 4 426 0 32 75 0 0 chr4 146042937 146043004 -56285343 + AT_rich Low_complexity Low_complexity 1 67 0 293 91 68 0 chr4 146043556 146043600 -56284747 - AluS SINE Alu -230 73 27 375 333 14 0 chr4 146044706 146044844 -56283503 - L1ME LINE L1 -5924 146 7 437 372 54 40 chr4 146045591 146046037 -56282310 + LTR16B LTR ERVL 6 457 -7 306 347 47 40 chr4 146046040 146046314 -56282033 + HERV16 LTR ERVL 1 276 -4720 1024 366 44 17 chr4 146046397 146047061 -56281286 + ERVL LTR ERVL 2949 3594 -2060 1845 148 38 32 chr4 146047061 146047434 -56280913 + THE1C LTR MaLR 1 375 0 1024 366 44 17 chr4 146047434 146048143 -56280204 + ERVL LTR ERVL 3594 4357 -1297 275 176 59 0 chr4 146048878 146048946 -56279401 + MER113 DNA MER1_type? 143 214 -307 267 206 76 98 chr4 146049063 146049155 -56279192 - MIR SINE MIR -136 126 37 519 270 59 0 chr4 146049258 146049410 -56278937 + MER113 DNA MER1_type? 320 480 -41 4723 158 33 15 chr4 146049769 146050642 -56277705 + L1MC1 LINE L1 5444 6332 -1 986 237 152 17 chr4 146050838 146051252 -56277095 - Charlie2a DNA MER1_type -890 1972 1503 848 199 0 0 chr4 146051252 146051393 -56276954 + AluJb SINE Alu 152 292 -20 249 169 34 0 chr4 146051489 146051548 -56276799 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 237 191 132 44 chr4 146051590 146051658 -56276689 - Charlie2a DNA MER1_type -2283 579 506 406 286 90 32 chr4 146051673 146051862 -56276485 - Charlie2a DNA MER1_type -2582 200 1 193 343 56 80 chr4 146053349 146053600 -56274747 + L2 LINE L2 2364 2608 -706 1024 230 29 0 chr4 146053601 146053810 -56274537 + MER58A DNA MER1_type 10 224 0 200 272 118 56 chr4 146053810 146054005 -56274342 + L2 LINE L2 2605 2811 -503 266 367 128 37 chr4 146054320 146054617 -56273730 - L2 LINE L2 -1 3271 2948 1915 129 17 10 chr4 146054618 146054913 -56273434 + AluSx SINE Alu 6 302 -10 338 363 123 9 chr4 146054999 146055299 -56273048 + L2 LINE L2 2742 3070 -202 2243 106 7 0 chr4 146055914 146056206 -56272141 - AluSx SINE Alu -18 294 1 254 297 186 21 chr4 146056503 146056648 -56271699 + MIR SINE MIR 15 183 -79 25 83 0 0 chr4 146058285 146058345 -56270002 + AT_rich Low_complexity Low_complexity 1 60 0 278 50 17 50 chr4 146059049 146059109 -56269238 + (TA)n Simple_repeat Simple_repeat 2 59 0 4704 143 50 24 chr4 146060154 146061032 -56267315 - MER4D LTR ERV1 0 903 3 4915 104 9 10 chr4 146061417 146062109 -56266238 - LTR8 LTR ERV1 0 691 1 3937 98 4 2 chr4 146063332 146063885 -56264462 - MER41A LTR ERV1 0 554 1 2323 91 3 0 chr4 146064176 146064472 -56263875 - AluSp SINE Alu -16 297 1 338 225 47 23 chr4 146064717 146064846 -56263501 + L1ME LINE L1 5623 5754 -367 469 322 34 25 chr4 146065370 146065606 -56262741 - MIR SINE MIR -16 246 9 383 318 96 69 chr4 146065971 146066035 -56262312 - L2 LINE L2 -213 3059 2998 2310 103 7 0 chr4 146066035 146066345 -56262002 - AluSp SINE Alu -1 312 1 383 318 96 69 chr4 146066345 146066356 -56261991 - L2 LINE L2 -274 2998 2989 2225 96 0 17 chr4 146066356 146066657 -56261690 - AluSg SINE Alu -14 296 1 383 318 96 69 chr4 146066657 146066999 -56261348 - L2 LINE L2 -283 2989 2628 2812 178 81 44 chr4 146067106 146067807 -56260540 + LTR8A LTR ERV1 1 727 0 1762 173 3 3 chr4 146068052 146068366 -56259981 - AluJo SINE Alu 0 314 1 561 157 20 29 chr4 146068707 146068809 -56259538 + MER41C LTR ERV1 3 103 -451 1452 251 59 40 chr4 146068809 146069498 -56258849 + MER61E LTR ERV1 1 779 0 2498 135 30 70 chr4 146069517 146069655 -56258692 + MER41C LTR ERV1 100 242 -312 2255 109 0 3 chr4 146069655 146069967 -56258380 + AluY SINE Alu 1 311 0 2498 135 30 70 chr4 146069967 146070301 -56258046 + MER41C LTR ERV1 242 553 -1 11492 121 45 26 chr4 146070302 146074368 -56253979 + MER41C-int LTR ERV1 1 5946 0 3334 137 36 0 chr4 146074369 146074903 -56253444 + MER41C LTR ERV1 2 554 0 21 0 0 0 chr4 146075093 146075114 -56253233 + AT_rich Low_complexity Low_complexity 1 21 0 304 273 84 35 chr4 146076175 146076318 -56252029 - L2 LINE L2 -9 3304 3155 282 325 42 75 chr4 146076548 146076705 -56251642 - L2 LINE L2 -443 2871 2727 1790 137 33 29 chr4 146076705 146077011 -56251336 - AluSx SINE Alu 0 312 6 282 325 42 75 chr4 146077011 146077161 -56251186 - L2 LINE L2 -587 2727 2574 798 257 56 19 chr4 146077384 146077598 -56250749 + MER58A DNA MER1_type 3 224 0 22 35 0 0 chr4 146078246 146078275 -56250072 + AT_rich Low_complexity Low_complexity 1 29 0 321 205 149 6 chr4 146078652 146078813 -56249534 + L1ME4a LINE L1 5933 6116 -5 1591 225 34 8 chr4 146079076 146079462 -56248885 - MSTD LTR MaLR 0 396 1 318 345 139 0 chr4 146079777 146080000 -56248347 - MIR SINE MIR 0 262 9 558 285 184 0 chr4 146082773 146082980 -56245367 - MIR SINE MIR -2 260 16 2086 132 7 0 chr4 146083045 146083348 -56244999 + AluSx SINE Alu 1 305 -7 1865 205 97 18 chr4 146083677 146084131 -56244216 + LTR2B LTR ERV1 1 490 0 1560 107 5 0 chr4 146084131 146084355 -56243992 + Harlequin LTR ERV1 1 225 -6671 640 236 159 22 chr4 146284427 146284609 -56043738 + MER58A DNA MER1_type 6 212 -12 31 0 0 0 chr4 146284640 146284671 -56043676 + AT_rich Low_complexity Low_complexity 1 31 0 404 226 143 20 chr4 146284713 146284886 -56043461 + MLT1B LTR MaLR 23 194 -180 905 235 20 0 chr4 146284916 146285112 -56043235 + MLT1B LTR MaLR 189 388 -2 240 269 0 19 chr4 146285201 146285253 -56043094 - L2 LINE L2 -89 3183 3133 933 216 215 33 chr4 146285382 146285877 -56042470 + LTR28 LTR ERV1 1 1305 -141 613 220 14 28 chr4 146286209 146286350 -56041997 + MER106A DNA MER1_type 1 139 -97 199 286 100 0 chr4 146286682 146286752 -56041595 + MIR SINE MIR 75 151 -111 759 236 84 9 chr4 146286796 146287021 -56041326 - L1ME1 LINE L1 -5 6161 5920 2124 111 3 13 chr4 146287022 146287329 -56041018 + AluSc SINE Alu 1 304 -5 1342 169 22 0 chr4 146287565 146287790 -56040557 + AluSg/x SINE Alu 80 309 -1 605 337 102 0 chr4 146287855 146288149 -56040198 - L2 LINE L2 -454 2860 2537 403 215 0 25 chr4 146288347 146288426 -56039921 + Tigger5 DNA MER2_type 3 79 -2244 366 208 0 0 chr4 146288429 146288501 -56039846 - Tigger5 DNA MER2_type -7 2316 2245 238 250 31 0 chr4 146288494 146288558 -56039789 + Tigger5 DNA MER2_type 2242 2307 -16 * 494 191 9 19 chr4 146288558 146288663 -56039684 + L1MC1 LINE L1 6219 6322 -11 301 224 132 46 chr4 146289107 146289281 -56039066 - MER53 DNA DNA 0 189 1 2014 114 10 3 chr4 146289480 146289770 -56038577 + AluSc SINE Alu 1 292 -17 2013 71 21 14 chr4 146291808 146292108 -56036239 - AluY SINE Alu 0 302 1 1543 217 25 33 chr4 146292393 146292761 -56035586 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr4 146292967 146292988 -56035359 + AT_rich Low_complexity Low_complexity 1 21 0 24 77 0 0 chr4 146294123 146294175 -56034172 + AT_rich Low_complexity Low_complexity 1 52 0 243 125 0 0 chr4 146294239 146294279 -56034068 + (TG)n Simple_repeat Simple_repeat 2 41 0 26 64 0 0 chr4 146294655 146294702 -56033645 + AT_rich Low_complexity Low_complexity 1 47 0 26 30 0 0 chr4 146294814 146294847 -56033500 + AT_rich Low_complexity Low_complexity 1 33 0 1290 104 6 6 chr4 146295628 146295810 -56032537 + AluSp SINE Alu 122 303 -10 251 231 0 0 chr4 146295860 146295912 -56032435 + L2 LINE L2 3262 3313 0 266 222 19 0 chr4 146296578 146296632 -56031715 + L2 LINE L2 3257 3311 -2 22 0 0 0 chr4 146296724 146296746 -56031601 + AT_rich Low_complexity Low_complexity 1 22 0 234 332 60 47 chr4 146296800 146297101 -56031246 + L2 LINE L2 1991 2295 -1019 495 201 45 17 chr4 146298507 146298642 -56029705 + MER61E LTR ERV1 1 798 -480 228 219 141 0 chr4 146298759 146298823 -56029524 + MER51A LTR ERV1 208 280 -354 * 668 174 74 149 chr4 146298794 146299199 -56029148 + LTR25 LTR ERV1 415 1232 -40 21 57 0 0 chr4 146299658 146299693 -56028654 + AT_rich Low_complexity Low_complexity 1 35 0 306 123 0 0 chr4 146301218 146301275 -56027072 + (GA)n Simple_repeat Simple_repeat 2 58 0 241 335 208 42 chr4 146301755 146302116 -56026231 + L2 LINE L2 1833 2253 -1061 517 289 0 42 chr4 146302230 146302396 -56025951 + MIR SINE MIR 28 186 -76 1542 189 63 0 chr4 146302416 146302581 -56025766 - AluJo SINE Alu -8 304 112 288 0 0 0 chr4 146302581 146302613 -56025734 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1542 189 63 0 chr4 146302613 146302733 -56025614 - AluJo SINE Alu -200 112 1 1771 160 7 0 chr4 146303765 146304071 -56024276 - AluSx SINE Alu 0 308 1 21 36 0 0 chr4 146304453 146304481 -56023866 + AT_rich Low_complexity Low_complexity 1 28 0 203 378 0 14 chr4 146305224 146305298 -56023049 + L2 LINE L2 3134 3206 -66 21 36 0 0 chr4 146305556 146305584 -56022763 + AT_rich Low_complexity Low_complexity 1 28 0 248 196 18 0 chr4 146306521 146306577 -56021770 + (TA)n Simple_repeat Simple_repeat 2 58 0 292 109 73 0 chr4 146307035 146307090 -56021257 + L1PA16 LINE L1 6108 6166 0 1228 62 0 0 chr4 146307242 146307386 -56020961 - AluY SINE Alu -167 144 1 288 0 0 0 chr4 146308474 146308506 -56019841 + (TG)n Simple_repeat Simple_repeat 2 33 0 230 286 36 12 chr4 146308513 146308597 -56019750 + MER103 DNA DNA 32 117 -49 511 266 45 26 chr4 146309265 146309419 -56018928 + MIR SINE MIR 51 207 -55 867 204 111 121 chr4 146309421 146309891 -56018456 + MER4C LTR ERV1 1 465 0 185 339 202 0 chr4 146309947 146310056 -56018291 + L2 LINE L2 2654 2784 -530 186 298 0 18 chr4 146310247 146310304 -56018043 + L2 LINE L2 3258 3313 0 7626 21 0 0 chr4 146310598 146312041 -56016306 - L1PA3 LINE L1 0 6155 4715 4791 184 48 17 chr4 146312141 146313148 -56015199 + L1MC3 LINE L1 6677 7699 -86 2181 166 10 10 chr4 146313154 146313545 -56014802 - MER61C LTR ERV1 -3 431 41 2645 80 11 3 chr4 146314500 146314852 -56013495 + THE1A LTR MaLR 1 355 0 479 176 23 76 chr4 146314902 146315033 -56013314 + MLT1E2 LTR MaLR 51 174 -452 988 236 80 90 chr4 146315146 146315569 -56012778 + MLT1E2 LTR MaLR 206 624 -2 297 308 0 17 chr4 146315659 146315776 -56012571 + GA-rich Low_complexity Low_complexity 2 116 0 1934 128 26 13 chr4 146319016 146319320 -56009027 - AluSx SINE Alu -4 308 1 22 0 0 0 chr4 146319639 146319661 -56008686 + AT_rich Low_complexity Low_complexity 1 22 0 213 108 0 0 chr4 146320799 146320836 -56007511 + (CA)n Simple_repeat Simple_repeat 2 38 0 1816 214 127 2 chr4 146321093 146321542 -56006805 + MLT1D LTR MaLR 1 505 0 583 282 103 88 chr4 146322217 146322541 -56005806 + HAL1b LINE L1 55 372 -976 2270 97 7 0 chr4 146322541 146322849 -56005498 - AluSx SINE Alu 0 312 3 583 282 103 88 chr4 146322849 146323163 -56005184 + HAL1b LINE L1 372 703 -645 23 0 0 0 chr4 146323254 146323277 -56005070 + AT_rich Low_complexity Low_complexity 1 23 0 1322 266 91 61 chr4 146323305 146324261 -56004086 + L1MC5 LINE L1 6430 7417 -544 288 285 117 7 chr4 146324394 146324531 -56003816 - MIR SINE MIR -25 237 86 25 0 0 0 chr4 146324711 146324736 -56003611 + AT_rich Low_complexity Low_complexity 1 25 0 186 136 45 0 chr4 146324918 146324962 -56003385 - L2 LINE L2 -303 2969 2924 1082 231 101 57 chr4 146325365 146325803 -56002544 - MLT1C LTR MaLR -2 465 9 255 306 69 65 chr4 146325882 146326098 -56002249 - L2 LINE L2 -797 2517 2301 723 248 50 30 chr4 146327347 146327549 -56000798 + MIR SINE MIR 15 220 -42 202 292 0 0 chr4 146327861 146327909 -56000438 + (CA)n Simple_repeat Simple_repeat 2 49 0 210 267 12 12 chr4 146328357 146328443 -55999904 + (TA)n Simple_repeat Simple_repeat 1 86 0 239 340 50 10 chr4 146329690 146329790 -55998557 + MIR SINE MIR 23 126 -136 339 322 105 75 chr4 146330355 146330988 -55997359 - L2 LINE L2 0 3313 2638 457 30 0 30 chr4 146331011 146331078 -55997269 + AluY SINE Alu 238 302 -10 183 287 250 37 chr4 146331412 146331548 -55996799 - MIR SINE MIR -11 251 87 1217 52 0 13 chr4 146331582 146331736 -55996611 + AluY SINE Alu 1 152 -159 945 213 4 52 chr4 146332243 146332473 -55995874 - MER20 DNA MER1_type 0 219 1 375 141 0 0 chr4 146332679 146332743 -55995604 + (GGA)n Simple_repeat Simple_repeat 3 66 0 1616 169 20 17 chr4 146332788 146333083 -55995264 + AluJb SINE Alu 1 296 -16 7189 183 22 30 chr4 146333659 146336325 -55992022 - L1MA4A LINE L1 -5 7000 4264 6499 240 44 2 chr4 146336338 146337712 -55990635 - L1MA4A LINE L1 -5232 1617 187 39 38 0 0 chr4 146337821 146337874 -55990473 + AT_rich Low_complexity Low_complexity 1 53 0 23 0 0 0 chr4 146339215 146339238 -55989109 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr4 146339327 146339356 -55988991 + AT_rich Low_complexity Low_complexity 1 29 0 1981 104 68 0 chr4 146339356 146339635 -55988712 - AluSx SINE Alu -14 298 1 3540 180 45 14 chr4 146340197 146340907 -55987440 + MER50 LTR ERV1 3 734 0 290 346 65 7 chr4 146341088 146341241 -55987106 + L2 LINE L2 3152 3313 0 280 260 40 20 chr4 146342846 146342996 -55985351 + (TATATG)n Simple_repeat Simple_repeat 6 158 0 1064 227 72 42 chr4 146343358 146343646 -55984701 - MLT1A2 LTR MaLR -29 345 44 2190 169 53 22 chr4 146343646 146344061 -55984286 - MSTA LTR MaLR 0 428 1 1064 227 72 42 chr4 146344061 146344107 -55984240 - MLT1A2 LTR MaLR -330 44 1 2219 120 117 25 chr4 146344561 146344953 -55983394 + MSTA LTR MaLR 1 428 0 375 61 0 0 chr4 146347427 146347476 -55980871 - L1PA6 LINE L1 -5 6149 6101 897 257 31 34 chr4 146348212 146348535 -55979812 + L1ME3A LINE L1 5841 6162 -8 211 234 0 0 chr4 146348713 146348760 -55979587 + (TAA)n Simple_repeat Simple_repeat 2 48 0 374 291 67 0 chr4 146348772 146348906 -55979441 - MIR SINE MIR -26 236 94 401 255 128 55 chr4 146350380 146350701 -55977646 - L1MC4a LINE L1 -326 5795 5559 25 31 0 0 chr4 146351109 146351141 -55977206 + AT_rich Low_complexity Low_complexity 1 32 0 1999 100 54 4 chr4 146351268 146351547 -55976800 - AluSp SINE Alu -20 293 1 12922 186 34 49 chr4 146351700 146353130 -55975217 - L1MA4 LINE L1 -9 7710 6261 1531 104 50 9 chr4 146353130 146353351 -55974996 - MER30 DNA MER1_type 0 230 1 12922 186 34 49 chr4 146353351 146355237 -55973110 - L1MA4 LINE L1 -1458 6261 4350 643 163 0 74 chr4 146355237 146355372 -55972975 - AluSp/q SINE Alu -12 301 177 12922 186 34 49 chr4 146355372 146357626 -55970721 - L1MA4 LINE L1 -3369 4350 2097 2507 43 0 7 chr4 146357626 146357930 -55970417 - AluY SINE Alu -9 302 1 12922 186 34 49 chr4 146357930 146358195 -55970152 - L1MA4 LINE L1 -5622 2097 1830 965 34 0 0 chr4 146358220 146358337 -55970010 + L1PA7 LINE L1 5858 5974 -180 3893 141 75 54 chr4 146358344 146359755 -55968592 + pTR5 LTR ERV1 758 2603 -3 1145 124 0 0 chr4 146359758 146359927 -55968420 + L1PA8 LINE L1 5971 6139 -33 1802 212 52 10 chr4 146360027 146360432 -55967915 - L1MA4 LINE L1 -7132 433 12 453 319 36 44 chr4 146360543 146360929 -55967418 - L1M4 LINE L1 -1523 4623 4241 25 0 0 0 chr4 146361169 146361194 -55967153 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr4 146361283 146361304 -55967043 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 146362182 146362204 -55966143 + AT_rich Low_complexity Low_complexity 1 22 0 1925 186 16 18 chr4 146365057 146365444 -55962903 + MLT1B LTR MaLR 3 388 -2 303 281 24 92 chr4 146366680 146366844 -55961503 + MIR SINE MIR 84 236 -26 21 57 0 0 chr4 146367901 146367936 -55960411 + AT_rich Low_complexity Low_complexity 1 35 0 1756 225 91 0 chr4 146367985 146368402 -55959945 + MER74C LTR ERVL 4 458 -2 850 289 79 23 chr4 146368772 146369163 -55959184 + MLT1J2 LTR MaLR 17 429 -21 4486 190 75 3 chr4 146370079 146371014 -55957333 - L1MC2 LINE L1 -12 6332 5331 983 114 0 0 chr4 146371021 146371153 -55957194 - AluSx SINE Alu -11 301 170 305 53 0 0 chr4 146371162 146371200 -55957147 - AluSx SINE Alu -174 129 92 1923 236 44 30 chr4 146371200 146371836 -55956511 - L1MC2 LINE L1 -822 5324 4680 21 57 0 0 chr4 146372019 146372054 -55956293 + AT_rich Low_complexity Low_complexity 1 35 0 238 300 17 0 chr4 146372171 146372231 -55956116 + L2 LINE L2 3211 3271 -1 1339 275 11 55 chr4 146374951 146375427 -55952920 + LTR16B LTR ERVL 8 462 -2 2793 142 46 10 chr4 146375490 146375970 -55952377 + LOR1a LTR ERV1 1 497 0 359 293 107 27 chr4 146377359 146377544 -55950803 + L1MC/D LINE L1 5373 5581 -2227 363 88 33 154 chr4 146377544 146377608 -55950739 + MADE1 DNA Mariner 1 52 -28 2213 97 13 0 chr4 146377608 146377906 -55950441 + AluSx SINE Alu 1 302 -10 363 88 33 154 chr4 146377906 146377932 -55950415 + MADE1 DNA Mariner 52 80 0 359 293 107 27 chr4 146377932 146377971 -55950376 + L1MC/D LINE L1 5581 5615 -2193 1866 145 3 0 chr4 146378277 146378567 -55949780 + MER6 DNA MER2_type 315 865 0 23 0 0 0 chr4 146378677 146378700 -55949647 + AT_rich Low_complexity Low_complexity 1 23 0 592 205 18 0 chr4 146380546 146380658 -55947689 + MER81 DNA DNA 1 114 0 356 276 0 0 chr4 146381128 146381215 -55947132 - MIR SINE MIR -14 248 162 513 296 0 30 chr4 146381218 146381387 -55946960 - MER63A DNA MER1_type -2 208 45 276 289 31 10 chr4 146381419 146381516 -55946831 - MIR SINE MIR -102 160 62 1198 300 116 25 chr4 146382079 146382792 -55945555 - L1ME LINE L1 -5207 863 86 761 297 144 35 chr4 146382884 146383315 -55945032 - MLT1K LTR MaLR -18 570 93 434 313 75 38 chr4 146383678 146383918 -55944429 + HAL1 LINE L1 196 444 -2063 333 286 69 40 chr4 146384091 146384565 -55943782 + HAL1 LINE L1 660 1165 -1342 384 22 0 0 chr4 146384655 146384700 -55943647 + (CA)n Simple_repeat Simple_repeat 1 45 0 616 290 113 45 chr4 146384744 146385099 -55943248 - MLT1J LTR MaLR -132 379 1 351 241 30 68 chr4 146385100 146385233 -55943114 + HAL1 LINE L1 1178 1305 -1202 1069 310 84 16 chr4 146385243 146385876 -55942471 + HAL1 LINE L1 1357 2032 -475 407 266 57 91 chr4 146385882 146386145 -55942202 + HAL1 LINE L1 2192 2445 -62 255 103 0 0 chr4 146386334 146386373 -55941974 + (TG)n Simple_repeat Simple_repeat 2 40 0 1733 178 89 3 chr4 146386404 146386742 -55941605 - MSTB LTR MaLR -59 367 1 257 167 0 17 chr4 146386838 146386898 -55941449 + A-rich Low_complexity Low_complexity 4 62 0 927 258 109 71 chr4 146386921 146387472 -55940875 + HAL1 LINE L1 1928 2499 -8 2045 141 10 0 chr4 146387794 146388092 -55940255 + AluSx SINE Alu 1 301 -11 1125 217 52 42 chr4 146390789 146391171 -55937176 - L1M4 LINE L1 -862 5284 4899 * 3769 224 61 70 chr4 146391170 146393692 -55934655 - L1M4 LINE L1 -400 6282 455 288 253 0 13 chr4 146393870 146393949 -55934398 + L2 LINE L2 2432 2509 -805 1858 151 45 0 chr4 146395716 146396007 -55932340 + AluSx SINE Alu 2 305 -7 1182 218 69 36 chr4 146396136 146396498 -55931849 - MLT1A2 LTR MaLR 0 374 1 1846 204 13 15 chr4 146396515 146396912 -55931435 - MSTD LTR MaLR 0 396 1 288 277 127 36 chr4 146397406 146397572 -55930775 - MIR SINE MIR 0 262 82 624 324 49 4 chr4 146399155 146399399 -55928948 + MIR SINE MIR 8 262 0 796 290 40 18 chr4 146399552 146399776 -55928571 + MIR SINE MIR 34 262 0 26 0 0 0 chr4 146399944 146399970 -55928377 + AT_rich Low_complexity Low_complexity 1 26 0 252 59 0 0 chr4 146400368 146400402 -55927945 + (CA)n Simple_repeat Simple_repeat 1 34 0 582 248 153 0 chr4 146400722 146400879 -55927468 + MER5A DNA MER1_type 1 181 -8 360 373 35 0 chr4 146400894 146400976 -55927371 - MER5B DNA MER1_type 0 178 100 1723 181 7 0 chr4 146400976 146401279 -55927068 - AluSx SINE Alu -7 305 1 360 373 35 0 chr4 146401279 146401365 -55926982 - MER5B DNA MER1_type -78 100 4 2131 111 0 3 chr4 146402347 146402645 -55925702 + AluSp SINE Alu 1 297 -16 34 0 0 0 chr4 146402739 146402773 -55925574 + AT_rich Low_complexity Low_complexity 1 34 0 23 68 0 0 chr4 146403078 146403122 -55925225 + AT_rich Low_complexity Low_complexity 1 44 0 601 221 66 0 chr4 146404543 146404665 -55923682 + MLT1G1 LTR MaLR 466 595 0 450 296 83 23 chr4 146404801 146405065 -55923282 + MLT1G1-int LTR MaLR 285 564 -807 281 288 44 109 chr4 146405995 146406224 -55922123 + MLT1G1-int LTR MaLR 1134 1347 -24 644 288 52 40 chr4 146406248 146406594 -55921753 + MLT1G1 LTR MaLR 2 346 -196 456 303 86 0 chr4 146406659 146406821 -55921526 + MIR SINE MIR 86 261 -1 24 32 0 0 chr4 146406834 146406865 -55921482 + AT_rich Low_complexity Low_complexity 1 31 0 414 332 76 25 chr4 146409087 146409325 -55919022 - MIR SINE MIR -10 252 3 1665 209 53 25 chr4 146409464 146409895 -55918452 - MER63C DNA MER1_type -235 695 253 1929 155 5 70 chr4 146410582 146410996 -55917351 + MLT1B LTR MaLR 4 390 0 21 57 0 0 chr4 146411000 146411035 -55917312 + AT_rich Low_complexity Low_complexity 1 35 0 191 286 196 9 chr4 146411418 146411530 -55916817 - MIR SINE MIR -48 214 82 1045 214 44 0 chr4 146411624 146411872 -55916475 - L1 LINE L1 -3742 2586 2328 4236 261 46 16 chr4 146411881 146412037 -55916310 - L1 LINE L1 -4080 1248 1098 1776 85 69 4 chr4 146412037 146412284 -55916063 - AluSx SINE Alu -16 296 34 4236 261 46 16 chr4 146412284 146412438 -55915909 - L1 LINE L1 -4230 1098 950 195 45 0 68 chr4 146412438 146412482 -55915865 + (TA)n Simple_repeat Simple_repeat 2 42 0 4236 261 46 16 chr4 146412482 146412747 -55915600 - L1 LINE L1 -4378 950 695 237 65 0 0 chr4 146412747 146412778 -55915569 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4236 261 46 16 chr4 146412778 146414078 -55914269 - L1 LINE L1 -4633 695 300 28 48 0 0 chr4 146414119 146414161 -55914186 + AT_rich Low_complexity Low_complexity 1 42 0 1313 221 87 56 chr4 146414355 146414804 -55913543 - MLT1C LTR MaLR -2 465 3 381 266 22 43 chr4 146417177 146417361 -55910986 - MER104 DNA MER2_type 0 180 1 412 279 54 54 chr4 146417361 146417565 -55910782 - MIR SINE MIR -2 260 57 864 211 0 6 chr4 146418572 146418743 -55909604 + FAM SINE Alu 1 170 -5 25 31 0 0 chr4 146419883 146419915 -55908432 + AT_rich Low_complexity Low_complexity 1 32 0 203 192 19 0 chr4 146420153 146420205 -55908142 + (TAGA)n Simple_repeat Simple_repeat 3 55 0 278 80 20 0 chr4 146420352 146420402 -55907945 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 181 392 62 0 chr4 146420524 146420621 -55907726 + L2 LINE L2 3153 3255 -17 2300 99 0 0 chr4 146420891 146421195 -55907152 - AluSq SINE Alu -9 304 1 21 0 0 0 chr4 146421253 146421274 -55907073 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4 146421353 146421373 -55906974 + (GGAA)n Simple_repeat Simple_repeat 3 22 0 972 126 17 0 chr4 146421375 146421549 -55906798 + GA-rich Low_complexity Low_complexity 1 177 0 22 0 0 0 chr4 146422614 146422636 -55905711 + AT_rich Low_complexity Low_complexity 1 22 0 292 305 127 17 chr4 146423569 146423687 -55904660 + L2 LINE L2 3183 3313 0 651 113 0 26 chr4 146424106 146424221 -55904126 + LTR10D LTR ERV1 1 112 -401 3663 104 34 2 chr4 146425109 146425647 -55902700 - L1PA10 LINE L1 -2 6166 5612 895 221 111 0 chr4 146425717 146425898 -55902449 + Tigger3(Golem) DNA MER2_type 1 201 -2828 * 3302 156 27 34 chr4 146425894 146426562 -55901785 + Tigger3(Golem) DNA MER2_type 2366 3028 -1 1665 192 73 9 chr4 146428512 146428855 -55899492 - MLT1A1 LTR MaLR 0 365 1 470 304 39 11 chr4 146429892 146430152 -55898195 + Tigger8 DNA MER2_type 256 522 -144 357 242 93 75 chr4 146430197 146430358 -55897989 - L2 LINE L2 -4 3309 3146 1399 227 172 37 chr4 146430365 146430801 -55897546 - MLT1D LTR MaLR -5 500 6 1324 281 90 32 chr4 146431009 146431477 -55896870 - L2 LINE L2 -426 2888 2382 2368 68 0 3 chr4 146431477 146431787 -55896560 + AluY SINE Alu 1 309 -2 1324 281 90 32 chr4 146431787 146431873 -55896474 - L2 LINE L2 -932 2382 2302 477 324 105 21 chr4 146431874 146432112 -55896235 - L2 LINE L2 -2901 413 156 305 299 31 0 chr4 146432189 146432286 -55896061 + MER94 DNA DNA 35 134 0 439 260 64 102 chr4 146432780 146433172 -55895175 - L1MEd LINE L1 -5067 1052 676 202 311 104 47 chr4 146435171 146435277 -55893070 + MIR SINE MIR 53 164 -98 703 252 13 0 chr4 146435947 146436102 -55892245 - MER3 DNA MER1_type -52 157 1 414 127 0 0 chr4 146437277 146437348 -55890999 + (TC)n Simple_repeat Simple_repeat 2 72 0 321 308 111 0 chr4 146437865 146438003 -55890344 - MER20 DNA MER1_type -4 215 63 1910 141 0 20 chr4 146438251 146438556 -55889791 - AluSx SINE Alu -13 299 1 327 358 75 13 chr4 146440904 146441130 -55887217 + L2 LINE L2 1360 1599 -1715 24 53 0 0 chr4 146441161 146441199 -55887148 + AT_rich Low_complexity Low_complexity 1 38 0 5060 181 32 11 chr4 146441204 146443143 -55885204 - L1PB3 LINE L1 -7 6147 4180 912 305 140 59 chr4 146443146 146443677 -55884670 + L2 LINE L2 1652 2138 -1176 2085 119 4 0 chr4 146443677 146443985 -55884362 - AluSg SINE Alu 0 309 1 912 305 140 59 chr4 146443985 146444676 -55883671 + L2 LINE L2 2138 2976 -338 198 333 30 0 chr4 146444751 146444817 -55883530 + L2 LINE L2 3002 3069 -244 183 42 0 0 chr4 146445585 146445609 -55882738 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 35260 103 14 13 chr4 146445692 146451833 -55876514 + L1PA7 LINE L1 11 6154 0 383 296 151 38 chr4 146453644 146453803 -55874544 + MER5A DNA MER1_type 13 189 0 4588 158 37 65 chr4 146454093 146455195 -55873152 - MER11C LTR ERVK 0 1071 1 968 275 65 55 chr4 146455308 146455708 -55872639 - L1MEc LINE L1 -5958 438 35 266 287 43 32 chr4 146455782 146455876 -55872471 - L2 LINE L2 -525 2789 2695 352 287 118 36 chr4 146456017 146456212 -55872135 - MIR SINE MIR -31 231 21 377 269 32 0 chr4 146456430 146456523 -55871824 + L2 LINE L2 2697 2792 -522 1340 166 33 91 chr4 146456569 146456876 -55871471 - MLT2B1 LTR ERVL -10 510 222 1728 171 0 0 chr4 146456892 146457156 -55871191 + AluSx SINE Alu 11 274 -38 663 217 0 0 chr4 146457156 146457313 -55871034 + GA-rich Low_complexity Low_complexity 4 160 0 344 82 20 0 chr4 146457313 146457362 -55870985 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 1351 175 30 27 chr4 146457362 146457625 -55870722 - MLT2B2 LTR ERVL -251 264 1 333 224 0 0 chr4 146457634 146457692 -55870655 + MER94 DNA DNA 1 58 -76 3787 181 35 2 chr4 146458946 146460109 -55868238 - L1MA7 LINE L1 -271 6020 4815 384 320 107 39 chr4 146461562 146461918 -55866429 - L3 LINE CR1 -21 1556 1177 325 356 64 40 chr4 146462006 146462332 -55866015 - L3 LINE CR1 -707 870 537 304 314 12 0 chr4 146462370 146462456 -55865891 - L2 LINE L2 -8 3264 3178 1798 138 59 0 chr4 146462475 146462765 -55865582 - AluSg SINE Alu -3 307 1 1923 143 29 13 chr4 146463899 146464206 -55864141 + AluSq SINE Alu 1 312 -1 638 241 15 8 chr4 146464291 146464424 -55863923 + MLT1E LTR MaLR 1 134 -459 1134 298 22 46 chr4 146464456 146464822 -55863525 + MLT1E LTR MaLR 120 476 -117 10485 199 23 23 chr4 146465652 146466698 -55861649 + L1 LINE L1 2150 3194 -2952 5348 128 20 4 chr4 146466698 146467379 -55860968 - L1PA15 LINE L1 -7 6158 5490 2364 100 3 0 chr4 146467379 146467689 -55860658 - AluY SINE Alu 0 311 1 5348 128 20 4 chr4 146467689 146468523 -55859824 - L1PA15 LINE L1 -675 5490 4644 2316 92 7 10 chr4 146468530 146468835 -55859512 - AluSc SINE Alu -5 304 1 10485 199 23 23 chr4 146468835 146470309 -55858038 + L1 LINE L1 3199 4679 -1467 2141 136 0 0 chr4 146470411 146470719 -55857628 + AluSg SINE Alu 1 308 -2 315 310 32 65 chr4 146472403 146472558 -55855789 + MIR3 SINE MIR 16 165 -43 30 27 0 0 chr4 146472659 146472696 -55855651 + AT_rich Low_complexity Low_complexity 1 37 0 575 327 20 20 chr4 146472813 146473061 -55855286 + MLT2E LTR ERVL 381 628 0 214 192 19 0 chr4 146474995 146475047 -55853300 + CT-rich Low_complexity Low_complexity 2 54 0 321 231 37 67 chr4 146475754 146475888 -55852459 - L1ME4a LINE L1 -3 6118 5989 882 324 40 3 chr4 146476582 146476909 -55851438 + MLT1I LTR MaLR 71 409 0 314 236 16 49 chr4 146477075 146477198 -55851149 - L1ME4a LINE L1 -210 5911 5793 836 160 51 6 chr4 146478260 146478416 -55849931 - L1M2 LINE L1 -498 5793 5631 24 0 0 0 chr4 146478636 146478660 -55849687 + AT_rich Low_complexity Low_complexity 1 24 0 232 158 74 7 chr4 146480229 146480531 -55847816 + (TA)n Simple_repeat Simple_repeat 1 322 0 3080 264 21 19 chr4 146480968 146481723 -55846624 + L1M3b LINE L1 5 761 -5520 238 339 18 9 chr4 146481728 146481840 -55846507 + L1M3b LINE L1 649 761 -5520 * 263 316 66 0 chr4 146481824 146481900 -55846447 + L1M3b LINE L1 628 708 -5573 1531 334 13 33 chr4 146481941 146482578 -55845769 + L1M3b LINE L1 629 1252 -5029 991 133 7 0 chr4 146482578 146482721 -55845626 + AluSq/x SINE Alu 1 144 -168 504 86 0 0 chr4 146484101 146484171 -55844176 + (CA)n Simple_repeat Simple_repeat 2 71 0 1011 216 10 0 chr4 146484468 146484667 -55843680 + MER3 DNA MER1_type 7 207 -2 21 0 0 0 chr4 146485510 146485531 -55842816 + AT_rich Low_complexity Low_complexity 1 21 0 2027 194 90 14 chr4 146485574 146485996 -55842351 + MER70A LTR ERVL 1 454 -18 1095 162 102 0 chr4 146486066 146486278 -55842069 + MER33 DNA MER1_type 7 247 -2338 1941 131 3 26 chr4 146486278 146486591 -55841756 - AluSq SINE Alu -7 306 1 1095 162 102 0 chr4 146486591 146486613 -55841734 + MER33 DNA MER1_type 247 265 -59 952 118 0 0 chr4 146487227 146487354 -55840993 + AluSq/x SINE Alu 1 127 -186 1712 223 47 31 chr4 146487480 146488412 -55839935 + L1M3b LINE L1 1265 2177 -4174 1188 231 57 16 chr4 146488580 146489072 -55839275 - MER54B LTR ERVL -6 888 86 6691 199 80 40 chr4 146489921 146491113 -55837234 + HERVL74 LTR ERVL 1041 2185 -3500 1994 158 0 0 chr4 146491113 146491410 -55836937 + AluSx SINE Alu 6 302 -10 6691 199 80 40 chr4 146491410 146491532 -55836815 + HERVL74 LTR ERVL 2185 2301 -3384 2582 61 0 6 chr4 146491532 146491843 -55836504 + AluSc SINE Alu 1 309 0 6691 199 80 40 chr4 146491843 146492255 -55836092 + HERVL74 LTR ERVL 2301 2836 -2849 2189 141 74 22 chr4 146492255 146492660 -55835687 - MSTB LTR MaLR 0 426 1 7865 189 65 10 chr4 146492660 146494226 -55834121 - MSTB-int LTR MaLR 0 1651 1 2598 149 17 7 chr4 146494226 146494648 -55833699 - MSTB LTR MaLR 0 426 1 1706 243 7 51 chr4 146494648 146495101 -55833246 + HERVL74 LTR ERVL 2832 3264 -2421 410 216 3 15 chr4 146495201 146495300 -55833047 + MLT1A1 LTR MaLR 259 459 -8 * 1191 186 28 13 chr4 146495298 146495596 -55832751 - MER61B LTR ERV1 -29 396 1 253 358 0 0 chr4 146495672 146495753 -55832594 + L2 LINE L2 3138 3218 -54 599 225 33 0 chr4 146496291 146496411 -55831936 + MER5C DNA MER1_type 1 124 -200 405 180 0 22 chr4 146496439 146496528 -55831819 + MER5C DNA MER1_type 234 320 -4 2202 100 33 0 chr4 146497252 146497551 -55830796 + AluSc SINE Alu 1 309 0 21 36 0 0 chr4 146498079 146498107 -55830240 + AT_rich Low_complexity Low_complexity 1 28 0 3376 110 60 116 chr4 146501145 146502633 -55825714 - pTR5 LTR ERV1 0 2438 741 195 349 0 0 chr4 146503995 146504058 -55824289 + MIR3 SINE MIR 139 201 -7 13930 183 30 23 chr4 146504496 146505701 -55822646 - L1MA4A LINE L1 -2 7003 5808 2222 128 3 0 chr4 146505701 146506006 -55822341 - AluSp SINE Alu -7 306 1 13930 183 30 23 chr4 146506006 146506133 -55822214 - L1MA4A LINE L1 -1197 5808 5683 2322 107 0 0 chr4 146506133 146506441 -55821906 - AluSc SINE Alu -1 308 1 13930 183 30 23 chr4 146506441 146508962 -55819385 - L1MA4A LINE L1 -1322 5683 3180 2579 36 7 3 chr4 146508962 146509271 -55819076 - AluY SINE Alu -1 310 1 13930 183 30 23 chr4 146509271 146510597 -55817750 - L1MA4A LINE L1 -3825 3180 1864 5372 52 8 0 chr4 146510597 146511255 -55817092 - L1PA5 LINE L1 0 6154 5492 1851 117 0 4 chr4 146511255 146511503 -55816844 - AluSg SINE Alu -63 247 1 13930 183 30 23 chr4 146511503 146513277 -55815070 - L1MA4A LINE L1 -5140 1865 1 1648 307 24 24 chr4 146513315 146513901 -55814446 + L1M4b LINE L1 2 587 -6272 1427 201 105 64 chr4 146513914 146514411 -55813936 + L1M4b LINE L1 663 1179 -5680 363 178 11 89 chr4 146514420 146514510 -55813837 + MLT1B LTR MaLR 240 322 -68 21 0 0 0 chr4 146514703 146514724 -55813623 + AT_rich Low_complexity Low_complexity 1 21 0 2110 105 0 37 chr4 146514724 146514877 -55813470 - AluSx SINE Alu -27 285 147 683 84 0 0 chr4 146514877 146514972 -55813375 - L1PA8 LINE L1 0 6172 6078 2110 105 0 37 chr4 146514972 146515114 -55813233 - AluSx SINE Alu -165 147 1 339 310 42 21 chr4 146515169 146515311 -55813036 + L1M4b LINE L1 1731 1875 -5072 2655 175 3 13 chr4 146515311 146515949 -55812398 + L1PA15 LINE L1 4801 5429 -736 2411 58 24 0 chr4 146515949 146516242 -55812105 + AluY SINE Alu 1 300 -11 3457 114 19 23 chr4 146516242 146516335 -55812012 + L1PA15 LINE L1 5599 5691 -474 1813 128 26 39 chr4 146516335 146516641 -55811706 + AluSx SINE Alu 1 302 -10 3457 114 19 23 chr4 146516641 146517110 -55811237 + L1PA15 LINE L1 5691 6159 -6 852 147 35 44 chr4 146517112 146517393 -55810954 + L1MB4 LINE L1 5196 5456 -718 2096 200 33 2 chr4 146517397 146517876 -55810471 + L1MB4 LINE L1 5686 6179 -1 2150 118 0 0 chr4 146518144 146518431 -55809916 + AluSc SINE Alu 23 309 0 2181 119 36 30 chr4 146518688 146519050 -55809297 - THE1B LTR MaLR 0 364 1 284 280 104 28 chr4 146519455 146519637 -55808710 + LTR33A LTR ERVL 328 523 0 467 292 69 0 chr4 146520679 146520809 -55807538 + MIR SINE MIR 4 142 -120 4534 165 124 24 chr4 146522815 146524220 -55804127 + pTR5 LTR ERV1 741 2438 0 196 333 74 0 chr4 146524805 146524886 -55803461 + L3b LINE CR1 1407 1493 -90 1849 147 17 46 chr4 146525362 146525709 -55802638 + MER1B DNA MER1_type 1 337 0 1036 250 74 24 chr4 146525801 146526221 -55802126 - L1MA9 LINE L1 -66 6246 5806 276 111 0 0 chr4 146526221 146526266 -55802081 + (TG)n Simple_repeat Simple_repeat 1 45 0 200 222 0 0 chr4 146527548 146527593 -55800754 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 524 318 32 23 chr4 146527806 146528023 -55800324 + MIR SINE MIR 13 231 -31 1206 151 16 12 chr4 146528974 146529225 -55799122 - LTR1 LTR ERV1 -533 252 1 25 51 0 0 chr4 146530363 146530402 -55797945 + AT_rich Low_complexity Low_complexity 1 39 0 528 137 21 0 chr4 146531306 146531401 -55796946 + L1MA9 LINE L1 6212 6308 -4 285 253 6 121 chr4 146531435 146531617 -55796730 + L2 LINE L2 3104 3264 -49 274 114 0 0 chr4 146532802 146532846 -55795501 - Charlie5 DNA MER1_type -49 2563 2520 1714 67 0 9 chr4 146532959 146533184 -55795163 - L1PA8 LINE L1 0 6172 5950 2151 206 73 17 chr4 146533304 146533781 -55794566 + MLT1D LTR MaLR 1 504 -1 4509 122 16 14 chr4 146533834 146534524 -55793823 - LTR8 LTR ERV1 0 691 1 2199 116 0 0 chr4 146535655 146535947 -55792400 + AluSg SINE Alu 1 292 -18 213 219 0 0 chr4 146536174 146536215 -55792132 + CT-rich Low_complexity Low_complexity 2 42 0 296 244 0 0 chr4 146536550 146536636 -55791711 - L1M4 LINE L1 -3139 3007 2922 1953 111 6 67 chr4 146536669 146536845 -55791502 - AluSx SINE Alu -15 297 147 1961 88 0 11 chr4 146536845 146537108 -55791239 - AluSg1 SINE Alu -11 298 39 1953 111 6 67 chr4 146537108 146537247 -55791100 - AluSx SINE Alu -165 147 1 312 321 54 82 chr4 146537250 146537642 -55790705 - L1M4 LINE L1 -3270 2876 2496 261 322 175 18 chr4 146538091 146538262 -55790085 + MIR SINE MIR 65 262 0 230 269 30 0 chr4 146538735 146538802 -55789545 + MLT1K LTR MaLR 520 588 0 2199 114 0 3 chr4 146539921 146540219 -55788128 - AluSx SINE Alu -15 297 1 207 363 150 22 chr4 146540325 146540686 -55787661 + L2 LINE L2 2400 2806 -508 204 333 14 43 chr4 146541205 146541346 -55787001 + MIR SINE MIR 64 200 -62 26 50 0 0 chr4 146541693 146541733 -55786614 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 146541855 146541876 -55786471 + AT_rich Low_complexity Low_complexity 1 21 0 1936 162 0 0 chr4 146542005 146542301 -55786046 + AluSx SINE Alu 1 296 -16 26 30 0 0 chr4 146542570 146542603 -55785744 + AT_rich Low_complexity Low_complexity 1 33 0 499 359 42 64 chr4 146542806 146543230 -55785117 + L2 LINE L2 2857 3271 -1 317 291 86 26 chr4 146543889 146544006 -55784341 - L2 LINE L2 -221 3051 2928 196 406 17 11 chr4 146544471 146544646 -55783701 - L2 LINE L2 -411 2903 2728 207 167 0 0 chr4 146546243 146546285 -55782062 + (CA)n Simple_repeat Simple_repeat 1 42 0 1862 145 91 19 chr4 146546332 146546752 -55781595 + LTR7 LTR ERV1 1 450 0 2966 158 22 15 chr4 146546779 146547324 -55781023 - MER34C LTR ERV1 0 585 37 2458 201 94 67 chr4 146547642 146548310 -55780037 + LTR8 LTR ERV1 6 691 0 2240 165 137 27 chr4 146548331 146548858 -55779489 + MER34C LTR ERV1 1 585 0 1370 282 73 30 chr4 146548953 146549361 -55778986 + L1MC4a LINE L1 5254 5706 -2102 3250 126 17 62 chr4 146549361 146549481 -55778866 - MER41C LTR ERV1 0 554 430 1922 122 25 7 chr4 146549481 146549790 -55778557 + AluSx SINE Alu 1 312 0 3250 126 17 62 chr4 146549790 146550249 -55778098 - MER41C LTR ERV1 -124 430 1 1370 282 73 30 chr4 146550249 146550535 -55777812 + L1MC4a LINE L1 5706 5978 -1830 3101 167 57 64 chr4 146550666 146551365 -55776982 - LTR8A LTR ERV1 0 727 34 205 389 42 42 chr4 146552475 146552619 -55775728 + MIR3 SINE MIR 58 201 -7 2141 95 13 41 chr4 146552800 146553115 -55775232 - AluSg SINE Alu -4 306 1 308 128 0 0 chr4 146553592 146553639 -55774708 - MLT2B1 LTR ERVL -7 513 467 322 42 62 0 chr4 146553676 146553724 -55774623 + MADE1 DNA Mariner 1 51 -29 225 65 0 0 chr4 146553783 146553814 -55774533 + (CA)n Simple_repeat Simple_repeat 2 32 0 2002 154 72 102 chr4 146553836 146554210 -55774137 - MLT2B1 LTR ERVL -42 478 121 1820 167 26 3 chr4 146554210 146554515 -55773832 - AluSx SINE Alu 0 312 1 2002 154 72 102 chr4 146554515 146554628 -55773719 - MLT2B1 LTR ERVL -399 121 6 532 344 96 0 chr4 146555798 146556028 -55772319 + MIR SINE MIR 11 262 0 1816 189 3 0 chr4 146556740 146557047 -55771300 - AluJb SINE Alu -4 308 1 763 209 0 47 chr4 146557103 146557275 -55771072 + FRAM SINE Alu 2 165 -11 1942 166 0 0 chr4 146557390 146557685 -55770662 + AluSx SINE Alu 1 295 -17 256 309 125 26 chr4 146557790 146557942 -55770405 - MARNA DNA Mariner -403 183 17 21 0 0 0 chr4 146558525 146558546 -55769801 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr4 146559068 146559100 -55769247 + AT_rich Low_complexity Low_complexity 1 32 0 1956 126 7 3 chr4 146559404 146559689 -55768658 - AluSq SINE Alu -21 292 7 1782 155 48 21 chr4 146560064 146560399 -55767948 - MER2 DNA MER2_type 0 344 1 184 351 80 37 chr4 146562322 146562510 -55765837 + L2 LINE L2 1698 1893 -1421 238 256 0 22 chr4 146562905 146562995 -55765352 + LTR67 LTR ERVL 458 545 -12 267 31 0 0 chr4 146563327 146563359 -55764988 + (A)n Simple_repeat Simple_repeat 1 32 0 2340 67 3 0 chr4 146563361 146563665 -55764682 + AluY SINE Alu 1 305 0 437 269 145 21 chr4 146563983 146564169 -55764178 - MER63A DNA MER1_type -1 209 1 645 311 58 19 chr4 146565822 146566079 -55762268 + ERVL LTR ERVL 2119 2385 -3379 313 333 144 52 chr4 146566152 146567212 -55761135 - L2 LINE L2 -6 3266 2125 2944 202 43 46 chr4 146567242 146567502 -55760845 + MER72 LTR ERV1 1 260 -462 2324 95 3 13 chr4 146567502 146567818 -55760529 - AluSq SINE Alu 0 313 1 2944 202 43 46 chr4 146567818 146568281 -55760066 + MER72 LTR ERV1 260 722 0 2237 156 37 13 chr4 146569466 146569845 -55758502 + MER61D LTR ERV1 114 501 0 1472 263 56 23 chr4 146570233 146570823 -55757524 + MLT2F LTR ERVL 1 655 -8 275 281 21 21 chr4 146570829 146570925 -55757422 + HERVL-F LTR ERVL 4 99 -5555 5061 300 78 17 chr4 146570991 146572341 -55756006 + HERVL-F LTR ERVL 193 1460 -4194 2856 211 59 19 chr4 146572341 146572968 -55755379 - MER82 DNA MER2_type -1 652 1 5061 300 78 17 chr4 146572968 146574986 -55753361 + HERVL-F LTR ERVL 1460 3875 -1779 1332 249 140 11 chr4 146574986 146575423 -55752924 + HERVL-F LTR ERVL 3992 4484 -1280 3106 271 39 16 chr4 146575449 146575711 -55752636 - L1M4b LINE L1 -5978 881 626 1818 151 58 21 chr4 146575711 146576036 -55752311 - MER1B DNA MER1_type 0 337 1 3106 271 39 16 chr4 146576036 146576622 -55751725 - L1M4b LINE L1 -6233 626 14 494 212 15 23 chr4 146576634 146576766 -55751581 + HERVL-F LTR ERVL 5621 5751 -13 1201 240 118 23 chr4 146576771 146577198 -55751149 + MLT2F LTR ERVL 1 541 -122 4042 121 6 23 chr4 146577198 146577842 -55750505 - MER41B LTR ERV1 -2 633 1 1201 240 118 23 chr4 146577842 146577978 -55750369 + MLT2F LTR ERVL 541 663 0 259 250 125 0 chr4 146578323 146578395 -55749952 + MIR SINE MIR 49 129 -133 308 330 160 0 chr4 146578860 146579066 -55749281 - MIR SINE MIR -19 243 5 249 327 37 19 chr4 146579176 146579283 -55749064 + MIR SINE MIR 151 259 -3 23 33 0 0 chr4 146580072 146580102 -55748245 + AT_rich Low_complexity Low_complexity 1 30 0 2227 96 0 7 chr4 146580180 146580473 -55747874 - AluSc SINE Alu -18 291 1 2349 87 6 13 chr4 146581459 146581771 -55746576 + AluSg SINE Alu 1 310 0 460 217 80 33 chr4 146583478 146583690 -55744657 - LTR37B LTR ERV1 -2 466 245 228 274 19 94 chr4 146583731 146583837 -55744510 + MLT1-int LTR MaLR 787 884 -487 342 236 22 11 chr4 146584351 146584440 -55743907 - MER94 DNA DNA -41 93 4 24 0 0 0 chr4 146584533 146584557 -55743790 + AT_rich Low_complexity Low_complexity 1 24 0 1024 307 39 3 chr4 146585317 146585675 -55742672 + HERV16 LTR ERVL 962 1332 -3664 26 0 0 0 chr4 146586000 146586026 -55742321 + AT_rich Low_complexity Low_complexity 1 26 0 582 278 97 18 chr4 146586032 146586259 -55742088 - MIR SINE MIR -11 251 7 282 279 101 47 chr4 146586277 146586406 -55741941 - L2 LINE L2 0 3313 3178 25 95 0 0 chr4 146589930 146590004 -55738343 + AT_rich Low_complexity Low_complexity 1 74 0 2291 68 34 7 chr4 146590053 146590347 -55738000 - AluY SINE Alu -9 302 1 1013 76 0 0 chr4 146590349 146590481 -55737866 - AluY SINE Alu -179 132 1 4009 179 49 9 chr4 146591161 146591955 -55736392 + LTR1B LTR ERV1 1 826 0 2157 98 7 7 chr4 146592044 146592339 -55736008 - AluSg SINE Alu -15 295 1 4268 187 42 7 chr4 146592919 146593839 -55734508 - L1MB7 LINE L1 -14 6668 5716 1418 206 69 18 chr4 146593853 146594246 -55734101 + LTR52 LTR ERVL 1 413 -8 2799 255 42 24 chr4 146594255 146594913 -55733434 - L1MB7 LINE L1 -946 5698 5013 2471 52 7 3 chr4 146594913 146595222 -55733125 - AluY SINE Alu -1 310 1 2799 255 42 24 chr4 146595222 146595602 -55732745 - L1MB7 LINE L1 -1631 5013 4641 2220 180 34 5 chr4 146595613 146595991 -55732356 - MER61D LTR ERV1 0 501 113 227 188 87 14 chr4 146596000 146596069 -55732278 - LTR28 LTR ERV1 -946 74 1 399 261 31 23 chr4 146596069 146596199 -55732148 - L1MB7 LINE L1 -2011 4633 4503 684 254 69 28 chr4 146596202 146596490 -55731857 - L1MB7 LINE L1 -2197 4447 4148 294 190 17 0 chr4 146596497 146596555 -55731792 - L1MB7 LINE L1 -2565 4079 4021 418 95 0 0 chr4 146596558 146596621 -55731726 - L1MA7 LINE L1 -13 6278 6216 813 198 73 94 chr4 146596728 146597066 -55731281 - L1MB7 LINE L1 -5456 1086 765 3175 191 46 7 chr4 146597068 146597787 -55730560 + L1MB4 LINE L1 5434 6180 0 252 235 0 0 chr4 146597787 146597838 -55730509 + MARNA DNA Mariner 330 380 -206 22 70 0 0 chr4 146598047 146598090 -55730257 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr4 146598797 146598825 -55729522 + AT_rich Low_complexity Low_complexity 1 28 0 746 141 57 34 chr4 146598976 146599153 -55729194 + MER53 DNA DNA 2 182 -7 194 292 28 14 chr4 146600755 146600827 -55727520 - MIR SINE MIR -112 150 78 21 82 0 0 chr4 146601313 146601362 -55726985 + AT_rich Low_complexity Low_complexity 1 49 0 260 325 89 79 chr4 146601654 146601934 -55726413 + L1MEd LINE L1 252 534 -5585 29 0 0 0 chr4 146602350 146602379 -55725968 + AT_rich Low_complexity Low_complexity 1 29 0 8245 121 19 8 chr4 146602881 146603397 -55724950 + HSMAR2 DNA Mariner 1 510 -792 2349 63 3 13 chr4 146603397 146603700 -55724647 + AluY SINE Alu 1 300 -11 8245 121 19 8 chr4 146603700 146604469 -55723878 + HSMAR2 DNA Mariner 510 1301 -1 1493 129 29 18 chr4 146604624 146604902 -55723445 + L1MA4A LINE L1 6021 6301 -2 2375 58 0 3 chr4 146605013 146605304 -55723043 - AluY SINE Alu -21 290 1 938 270 123 54 chr4 146605560 146606042 -55722305 - MLT1G LTR MaLR -12 543 30 1037 241 67 35 chr4 146606971 146607286 -55721061 - L1MD2 LINE L1 -35 6324 6000 2014 142 3 7 chr4 146607314 146607610 -55720737 + AluSx SINE Alu 1 295 -17 24 0 0 0 chr4 146608203 146608227 -55720120 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 146608402 146608426 -55719921 + AT_rich Low_complexity Low_complexity 1 24 0 317 252 49 49 chr4 146608873 146608996 -55719351 - MER5C DNA MER1_type -200 124 2 204 232 0 18 chr4 146610880 146610936 -55717411 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 584 303 111 58 chr4 146611134 146611692 -55716655 + L2 LINE L2 2740 3313 0 585 265 31 43 chr4 146611744 146612001 -55716346 + L1ME1 LINE L1 4547 4800 -1346 878 185 0 0 chr4 146612001 146612147 -55716200 + FRAM SINE Alu 1 146 -30 300 137 0 0 chr4 146612153 146612204 -55716143 + (GA)n Simple_repeat Simple_repeat 2 52 0 2689 264 47 22 chr4 146612204 146613546 -55714801 + L1ME1 LINE L1 4786 6157 -9 2206 122 0 0 chr4 146618748 146619060 -55709287 + AluSx SINE Alu 1 312 0 2150 181 83 93 chr4 146619632 146620366 -55707981 + LTR8A LTR ERV1 1 727 0 1268 165 57 33 chr4 146620965 146621463 -55706884 - LTR47A LTR ERVL 0 452 1 21 36 0 0 chr4 146621876 146621904 -55706443 + AT_rich Low_complexity Low_complexity 1 28 0 1632 185 0 38 chr4 146623138 146623452 -55704895 - AluJb SINE Alu -10 302 1 2258 113 0 0 chr4 146624443 146624744 -55703603 + AluSx SINE Alu 1 301 -11 4736 163 82 26 chr4 146624959 146626394 -55701953 - L1MA5A LINE L1 0 6297 4801 300 27 0 0 chr4 146626395 146626432 -55701915 + (TC)n Simple_repeat Simple_repeat 2 38 0 246 62 0 0 chr4 146626431 146626463 -55701884 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 7233 179 41 58 chr4 146626463 146626787 -55701560 - L1MA5A LINE L1 -1620 4526 4198 2472 62 0 3 chr4 146626787 146627095 -55701252 - AluY SINE Alu -4 307 1 7233 179 41 58 chr4 146627095 146628695 -55699652 - L1MA5A LINE L1 -1948 4198 2635 535 189 23 0 chr4 146630313 146630445 -55697902 + LTR37A LTR ERV1 290 424 -2 2238 104 3 25 chr4 146630942 146631258 -55697089 - AluSx SINE Alu -3 309 1 27 0 0 0 chr4 146631579 146631606 -55696741 + AT_rich Low_complexity Low_complexity 1 27 0 183 80 0 0 chr4 146633830 146633855 -55694492 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 2274 112 0 0 chr4 146634640 146634943 -55693404 + AluSg SINE Alu 3 305 -5 455 245 108 36 chr4 146634999 146635248 -55693099 + L1MEc LINE L1 1058 1287 -4918 357 253 94 35 chr4 146636592 146636762 -55691585 + MIR SINE MIR 25 204 -58 1503 302 46 24 chr4 146637021 146637091 -55691256 + Zaphod DNA AcHobo 26 93 -3938 225 94 0 0 chr4 146637091 146637123 -55691224 + (CA)n Simple_repeat Simple_repeat 1 32 0 1503 302 46 24 chr4 146637123 146637595 -55690752 + Zaphod DNA AcHobo 93 580 -3451 236 348 89 0 chr4 146637853 146637988 -55690359 + L1M4 LINE L1 5392 5538 -636 1147 148 65 0 chr4 146638219 146638449 -55689898 + L1MA8 LINE L1 6044 6288 -3 38 22 0 0 chr4 146638449 146638494 -55689853 + AT_rich Low_complexity Low_complexity 1 45 0 1963 122 0 10 chr4 146638574 146638697 -55689650 + AluSx SINE Alu 1 124 -184 234 0 0 0 chr4 146638697 146638723 -55689624 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1963 122 0 10 chr4 146638723 146638910 -55689437 + AluSx SINE Alu 124 308 0 270 81 0 0 chr4 146640385 146640422 -55687925 + (A)n Simple_repeat Simple_repeat 1 37 0 228 368 19 19 chr4 146642010 146642116 -55686231 + L2 LINE L2 2605 2710 -604 4546 75 8 5 chr4 146642196 146642807 -55685540 + L1PA11 LINE L1 5562 6174 0 271 303 64 22 chr4 146643088 146643355 -55684992 + L1ME3A LINE L1 3715 3992 -2154 450 292 135 25 chr4 146643919 146644777 -55683570 + L1ME3A LINE L1 5004 5957 -213 838 279 88 35 chr4 146644900 146645330 -55683017 - LTR16A1 LTR ERVL 0 457 5 1176 199 14 0 chr4 146645553 146645769 -55682578 + MLT1D LTR MaLR 287 505 0 814 212 169 56 chr4 146645900 146646202 -55682145 + MLT1E2 LTR MaLR 216 551 -75 1367 333 34 23 chr4 146646254 146646521 -55681826 - HERV16 LTR ERVL -2771 2225 1962 3397 143 31 71 chr4 146646521 146647241 -55681106 + LTR8 LTR ERV1 1 691 0 1367 333 34 23 chr4 146647241 146647505 -55680842 - HERV16 LTR ERVL -3034 1962 1688 2112 108 4 146 chr4 146647517 146648010 -55680337 + MER4A LTR ERV1 1 423 -241 599 226 32 37 chr4 146648030 146648220 -55680127 + MER4C LTR ERV1 277 465 0 1211 322 39 7 chr4 146648402 146648859 -55679488 - HERV16 LTR ERVL -3601 1395 924 518 292 30 83 chr4 146648854 146649193 -55679154 - HERV16 LTR ERVL -4212 784 464 * 617 250 57 44 chr4 146649694 146649922 -55678425 - LTR16A1 LTR ERVL 0 457 227 451 312 70 0 chr4 146652810 146652996 -55675351 + MIR SINE MIR 63 261 -1 725 274 92 77 chr4 146653100 146653619 -55674728 - LTR67 LTR ERVL -12 545 19 241 346 54 23 chr4 146654667 146654797 -55673550 - MIR SINE MIR -117 145 12 708 289 20 51 chr4 146654802 146655055 -55673292 - MIR SINE MIR 0 262 18 22 0 0 0 chr4 146655084 146655106 -55673241 + AT_rich Low_complexity Low_complexity 1 22 0 956 347 76 14 chr4 146655562 146656138 -55672209 - L2 LINE L2 -493 2821 2210 208 171 0 0 chr4 146657044 146657079 -55671268 - MER91B DNA MER1_type -127 63 29 182 62 31 0 chr4 146658036 146658068 -55670279 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr4 146658344 146658365 -55669982 + AT_rich Low_complexity Low_complexity 1 21 0 183 181 96 121 chr4 146658629 146658712 -55669635 + MIR SINE MIR 176 256 -6 635 280 102 13 chr4 146659728 146659964 -55668383 + MLT1J1 LTR MaLR 47 303 -143 1721 164 71 12 chr4 146661690 146662026 -55666321 + MER46B DNA MER2_type 5 235 -1 543 249 140 68 chr4 146662049 146662522 -55665825 - MLT1G1 LTR MaLR -31 524 1 201 147 0 0 chr4 146662610 146662644 -55665703 + (TCTCCC)n Simple_repeat Simple_repeat 3 36 0 1292 192 51 54 chr4 146662645 146662958 -55665389 - AluJb SINE Alu 0 312 1 2897 106 0 48 chr4 146663172 146663626 -55664721 - MER4B LTR ERV1 0 610 179 429 229 48 19 chr4 146663616 146663721 -55664626 - MER74A LTR ERVL -10 548 441 * 7617 238 34 24 chr4 146663817 146666536 -55661811 + L1PA13 LINE L1 1434 4193 -2604 1824 152 60 9 chr4 146666538 146666887 -55661460 + L1PA15 LINE L1 5798 6164 -1 475 200 70 20 chr4 146667000 146667100 -55661247 - MER74A LTR ERVL -13 545 441 482 251 114 121 chr4 146667972 146668427 -55659920 - LTR16A1 LTR ERVL 0 457 6 402 74 0 0 chr4 146669711 146669765 -55658582 + (TA)n Simple_repeat Simple_repeat 1 54 0 607 266 17 17 chr4 146669885 146670062 -55658285 - MER5B DNA MER1_type -1 177 1 33 0 0 0 chr4 146670280 146670313 -55658034 + AT_rich Low_complexity Low_complexity 1 33 0 640 298 72 30 chr4 146670453 146670888 -55657459 - L1M4 LINE L1 -448 5736 5273 4814 131 133 122 chr4 146671186 146672732 -55655615 - pTR5 LTR ERV1 0 2438 743 2462 53 0 0 chr4 146672752 146673052 -55655295 - AluY SINE Alu -11 300 1 1086 135 42 5 chr4 146673221 146673413 -55654934 - MER39 LTR ERV1 0 707 509 303 140 0 0 chr4 146673454 146673504 -55654843 + (CA)n Simple_repeat Simple_repeat 2 51 0 13904 181 34 50 chr4 146673507 146675498 -55652849 - L1M2 LINE L1 -517 7202 5181 2078 106 0 7 chr4 146675498 146675816 -55652531 - AluY SINE Alu 0 316 1 13904 181 34 50 chr4 146675816 146678005 -55650342 - L1M2 LINE L1 -2538 5181 3103 22 56 0 0 chr4 146678175 146678211 -55650136 + AT_rich Low_complexity Low_complexity 1 36 0 275 287 67 45 chr4 146678705 146678928 -55649419 - L1M4 LINE L1 -3632 2514 2287 705 253 51 55 chr4 146679874 146680127 -55648220 - L1ME3 LINE L1 -7 6155 5904 21 0 0 0 chr4 146680749 146680770 -55647577 + AT_rich Low_complexity Low_complexity 1 21 0 426 303 105 0 chr4 146681547 146681709 -55646638 - MIR SINE MIR -32 230 52 1556 208 20 38 chr4 146681782 146682028 -55646319 - MER58B DNA MER1_type -2079 341 101 1864 107 67 64 chr4 146682028 146682402 -55645945 + THE1C LTR MaLR 1 375 0 1556 208 20 38 chr4 146682402 146682502 -55645845 - MER58B DNA MER1_type -2319 101 1 227 143 0 0 chr4 146683330 146683365 -55644982 + U2 snRNA snRNA 1 35 -153 2138 112 0 0 chr4 146683699 146683984 -55644363 + AluSc SINE Alu 3 287 -22 41 0 0 0 chr4 146684513 146684554 -55643793 + AT_rich Low_complexity Low_complexity 1 41 0 481 277 139 25 chr4 146685226 146685428 -55642919 + MIR SINE MIR 28 252 -10 487 291 138 5 chr4 146687091 146687280 -55641067 - MIR SINE MIR 0 262 49 197 136 0 45 chr4 146687313 146687357 -55640990 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 2282 162 18 0 chr4 146690751 146691147 -55637200 - MER57A LTR ERV1 0 403 1 974 132 0 0 chr4 146691148 146691292 -55637055 - MER57A-int LTR ERV1 -1 7536 7393 232 185 74 0 chr4 146691292 146691346 -55637001 - LTR54B LTR ERV1 -207 291 234 277 172 86 0 chr4 146691346 146691404 -55636943 - MER57A-int LTR ERV1 -202 7335 7273 622 165 18 9 chr4 146691407 146691516 -55636831 - LTR54B LTR ERV1 -373 125 16 6557 112 19 31 chr4 146691517 146692405 -55635942 - MER57A-int LTR ERV1 -380 7157 6260 2143 119 10 0 chr4 146692405 146692700 -55635647 + AluSg SINE Alu 1 298 -12 2302 75 0 10 chr4 146692704 146692999 -55635348 + AluY SINE Alu 2 293 -18 6557 112 19 31 chr4 146692999 146693133 -55635214 - MER57A-int LTR ERV1 -1280 6257 6142 2451 184 16 0 chr4 146693130 146693560 -55634787 - MER57A-int LTR ERV1 -7100 437 1 * 2054 157 55 0 chr4 146693560 146693942 -55634405 - MER57A LTR ERV1 0 403 1 351 326 37 66 chr4 146693955 146694305 -55634042 - L1M4 LINE L1 -1024 5122 4783 * 414 317 67 65 chr4 146694303 146694644 -55633703 - HAL1 LINE L1 -260 2247 1906 350 225 129 132 chr4 146694884 146695209 -55633138 - MLT1L LTR MaLR -138 477 154 439 280 38 0 chr4 146695287 146695419 -55632928 - MIR SINE MIR 0 262 126 441 338 45 48 chr4 146695576 146695910 -55632437 + HAL1 LINE L1 2170 2502 -5 479 17 17 0 chr4 146696269 146696329 -55632018 + (CA)n Simple_repeat Simple_repeat 2 62 0 15594 49 2 5 chr4 146696669 146697401 -55630946 - L1P LINE L1 -2630 3516 2784 2124 92 3 0 chr4 146697401 146697708 -55630639 - AluY SINE Alu 0 308 1 15594 49 2 5 chr4 146697708 146698983 -55629364 - L1P LINE L1 -3362 2784 1513 14976 47 7 3 chr4 146698983 146701610 -55626737 + L1PA5 LINE L1 3514 6154 0 1438 255 131 17 chr4 146704054 146704635 -55623712 - MER76 LTR ERV -41 647 1 633 294 91 57 chr4 146707501 146708041 -55620306 + L1MEd LINE L1 462 1019 -5100 277 272 39 19 chr4 146708235 146708338 -55620009 + L1MEd LINE L1 1019 1123 -4996 1583 297 150 16 chr4 146708349 146709083 -55619264 + L2 LINE L2 2005 2836 -478 422 253 145 69 chr4 146709146 146709478 -55618869 + L2 LINE L2 2848 3204 -109 633 318 86 20 chr4 146709517 146709819 -55618528 + ERVL LTR ERVL 3516 3837 -1927 207 0 0 0 chr4 146710681 146710704 -55617643 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr4 146711075 146711097 -55617250 + AT_rich Low_complexity Low_complexity 1 22 0 2339 37 34 7 chr4 146711376 146711672 -55616675 + AluY SINE Alu 1 304 -7 21 57 0 0 chr4 146711741 146711776 -55616571 + AT_rich Low_complexity Low_complexity 1 35 0 2012 163 5 63 chr4 146713035 146713446 -55614901 + MLT1B LTR MaLR 1 387 -3 579 268 84 21 chr4 146713597 146713787 -55614560 - MIR SINE MIR -48 214 13 377 290 38 33 chr4 146713899 146714088 -55614259 + MLT1F1 LTR MaLR 25 254 -341 591 290 11 11 chr4 146714088 146714264 -55614083 - MER45A DNA AcHobo 0 178 3 22 0 0 0 chr4 146714688 146714710 -55613637 + AT_rich Low_complexity Low_complexity 1 22 0 2546 46 0 0 chr4 146714822 146715124 -55613223 + AluY SINE Alu 1 302 -9 403 280 140 0 chr4 146715358 146715508 -55612839 - MIR SINE MIR -82 180 10 4997 232 48 19 chr4 146715515 146715773 -55612574 + Charlie1a DNA MER1_type 6 255 -2506 1976 99 33 0 chr4 146715773 146716078 -55612269 + AluSp SINE Alu 1 314 0 4997 232 48 19 chr4 146716078 146717221 -55611126 + Charlie1a DNA MER1_type 255 1450 -5 214 301 27 14 chr4 146717416 146717489 -55610858 - L3 LINE CR1 -150 1427 1354 221 364 154 18 chr4 146717619 146717891 -55610456 - L3 LINE CR1 -632 945 637 230 347 90 13 chr4 146717916 146718188 -55610159 - L3 LINE CR1 -1075 502 162 1956 110 3 30 chr4 146718254 146718553 -55609794 - AluSx SINE Alu -21 291 1 274 22 89 0 chr4 146718920 146718965 -55609382 + CT-rich Low_complexity Low_complexity 1 49 0 1473 39 0 0 chr4 146718965 146719145 -55609202 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 6328 60 51 3 chr4 146719149 146720472 -55607875 - L1PA7 LINE L1 0 6154 4784 1270 120 0 0 chr4 146720492 146720667 -55607680 - AluSg/x SINE Alu -2 310 136 2707 13 0 3 chr4 146720849 146721156 -55607191 + AluYa5 SINE Alu 1 306 -5 24 0 0 0 chr4 146721280 146721304 -55607043 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 146721582 146721603 -55606744 + AT_rich Low_complexity Low_complexity 1 21 0 2444 133 6 0 chr4 146723086 146723448 -55604899 - THE1B LTR MaLR 0 364 1 214 325 0 0 chr4 146723821 146723901 -55604446 + (TA)n Simple_repeat Simple_repeat 1 80 0 1299 230 38 32 chr4 146723914 146724283 -55604064 + MLT1A2 LTR MaLR 4 374 0 359 289 31 0 chr4 146724668 146724796 -55603551 - L1MC/D LINE L1 -2009 5799 5668 269 269 77 10 chr4 146724906 146725010 -55603337 + MLT1G1 LTR MaLR 485 595 0 412 276 8 0 chr4 146725024 146725147 -55603200 + L1ME3 LINE L1 5157 5280 -866 2251 126 3 51 chr4 146725148 146725522 -55602825 + THE1B LTR MaLR 9 364 0 404 275 47 5 chr4 146725527 146725738 -55602609 + L1ME3 LINE L1 5290 5509 -653 563 244 131 0 chr4 146725745 146725921 -55602426 + L1ME3 LINE L1 5658 5856 -306 23 0 0 0 chr4 146726046 146726069 -55602278 + AT_rich Low_complexity Low_complexity 1 23 0 305 334 91 30 chr4 146726189 146726518 -55601829 - L1MC/D LINE L1 -1313 4833 4485 1551 156 107 10 chr4 146726552 146726860 -55601487 - MER44D DNA MER2_type -1 608 1 543 56 75 0 chr4 146726920 146727027 -55601320 + CT-rich Low_complexity Low_complexity 4 118 0 21 36 0 0 chr4 146727248 146727276 -55601071 + AT_rich Low_complexity Low_complexity 1 28 0 4402 208 43 11 chr4 146727482 146728549 -55599798 + L1MA10 LINE L1 5227 6332 -2 24 32 0 0 chr4 146728551 146728582 -55599765 + AT_rich Low_complexity Low_complexity 1 31 0 2135 103 33 0 chr4 146728910 146729211 -55599136 - AluSp SINE Alu -2 311 1 487 258 44 111 chr4 146729595 146729820 -55598527 - MIR SINE MIR -5 257 48 3615 230 55 16 chr4 146729837 146731704 -55596643 + L1MB5 LINE L1 4240 6174 0 2331 229 30 2 chr4 146731755 146732218 -55596129 + MER70B LTR ERVL 1 476 -102 2281 154 43 17 chr4 146732508 146732923 -55595424 + MSTB LTR MaLR 1 426 0 409 300 72 56 chr4 146733285 146733605 -55594742 - HAL1b LINE L1 -701 647 323 25 0 0 0 chr4 146734722 146734747 -55593600 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr4 146735151 146735184 -55593163 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4 146735406 146735434 -55592913 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 146736495 146736521 -55591826 + AT_rich Low_complexity Low_complexity 1 26 0 260 261 22 63 chr4 146737083 146737313 -55591034 + L1MEc LINE L1 2208 2546 -3669 1818 174 7 0 chr4 146737313 146737612 -55590735 + AluSx SINE Alu 1 301 -11 260 261 22 63 chr4 146737612 146737678 -55590669 + L1MEc LINE L1 2546 2613 -3602 25 0 0 0 chr4 146737695 146737720 -55590627 + AT_rich Low_complexity Low_complexity 1 25 0 1007 243 69 0 chr4 146738109 146738327 -55590020 - MLT1E LTR MaLR 0 593 361 3759 164 68 5 chr4 146738327 146738999 -55589348 + MER50 LTR ERV1 1 715 -19 963 284 119 15 chr4 146738993 146739321 -55589026 - MLT1E LTR MaLR -224 369 8 * 560 258 36 21 chr4 146739701 146739895 -55588452 + L1MEc LINE L1 2412 2608 -3607 * 1101 252 28 52 chr4 146739873 146740425 -55587922 + L1PBa LINE L1 2721 3252 -3610 2078 224 83 18 chr4 146740426 146741377 -55586970 + L1MEc LINE L1 3638 4696 -2166 347 377 43 12 chr4 146741384 146741641 -55586706 - L2 LINE L2 -223 3090 2826 22 35 0 0 chr4 146742454 146742483 -55585864 + AT_rich Low_complexity Low_complexity 1 29 0 2565 242 86 26 chr4 146743207 146743877 -55584470 - L1MEc LINE L1 -2887 3328 2603 2005 112 0 11 chr4 146743877 146744163 -55584184 + AluSc SINE Alu 13 295 -14 2565 242 86 26 chr4 146744163 146744642 -55583705 - L1MEc LINE L1 -3612 2603 2154 702 291 83 51 chr4 146744686 146745349 -55582998 - L1MEc LINE L1 -4463 1933 1250 2348 106 36 0 chr4 146745568 146745928 -55582419 + L1PB1 LINE L1 5779 6151 0 7478 28 2 0 chr4 146745985 146747377 -55580970 - L1PA4 LINE L1 0 6155 4758 36 23 0 0 chr4 146747457 146747500 -55580847 + AT_rich Low_complexity Low_complexity 1 43 0 2113 114 0 25 chr4 146748075 146748392 -55579955 + AluSx SINE Alu 1 309 -3 213 367 37 0 chr4 146748880 146748989 -55579358 - MIR SINE MIR -1 261 149 22 0 0 0 chr4 146749138 146749160 -55579187 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 146749240 146749262 -55579085 + AT_rich Low_complexity Low_complexity 1 22 0 324 143 0 0 chr4 146749576 146749646 -55578701 + (TA)n Simple_repeat Simple_repeat 2 71 0 238 234 0 21 chr4 146750797 146750891 -55577456 + (TA)n Simple_repeat Simple_repeat 1 92 0 21 82 0 0 chr4 146751276 146751325 -55577022 + AT_rich Low_complexity Low_complexity 1 49 0 523 328 92 0 chr4 146751326 146751564 -55576783 - MIR SINE MIR 0 262 3 21 36 0 0 chr4 146752530 146752558 -55575789 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr4 146752664 146752699 -55575648 + AT_rich Low_complexity Low_complexity 1 35 0 742 306 14 14 chr4 146754497 146754713 -55573634 - MIR SINE MIR -46 216 1 1917 147 3 0 chr4 146754836 146755122 -55573225 + AluSx SINE Alu 7 293 -19 271 243 130 60 chr4 146755250 146755435 -55572912 + L1ME LINE L1 5562 5759 -362 60 71 0 7 chr4 146755584 146755632 -55572715 + AT_rich Low_complexity Low_complexity 1 48 -92 2033 146 3 0 chr4 146755632 146755941 -55572406 - AluSx SINE Alu -2 310 1 60 71 0 7 chr4 146755941 146756033 -55572314 + AT_rich Low_complexity Low_complexity 48 140 0 224 236 18 0 chr4 146756301 146756356 -55571991 + (TGAA)n Simple_repeat Simple_repeat 2 57 0 276 224 0 0 chr4 146757184 146757251 -55571096 + A-rich Low_complexity Low_complexity 1 67 0 26 50 0 0 chr4 146759006 146759046 -55569301 + AT_rich Low_complexity Low_complexity 1 40 0 1998 198 65 51 chr4 146759201 146759691 -55568656 - MLT1D LTR MaLR -8 497 1 374 293 155 6 chr4 146759796 146759970 -55568377 - LTR16A LTR ERVL 0 450 251 3695 97 265 0 chr4 146760174 146760827 -55567520 - LTR12 LTR ERV1 0 826 1 584 211 119 46 chr4 146760885 146761170 -55567177 - pTR5 LTR ERV1 -1391 1047 742 732 312 52 18 chr4 146761698 146762079 -55566268 + L1MCc LINE L1 24 417 -6006 622 323 56 29 chr4 146762316 146762657 -55565690 + L1MCc LINE L1 814 1163 -5260 993 302 20 21 chr4 146762717 146763031 -55565316 + MLT1E3 LTR MaLR 216 573 -51 470 204 29 0 chr4 146763138 146763241 -55565106 - L1MB5 LINE L1 -9 6165 6060 292 212 15 0 chr4 146763252 146763318 -55565029 + MLT1E3 LTR MaLR 588 654 0 2068 57 0 0 chr4 146763405 146763667 -55564680 + L1PA7 LINE L1 5882 6143 -11 2352 231 119 56 chr4 146763960 146765072 -55563275 + L1MCc LINE L1 2904 4005 -2936 7272 39 0 5 chr4 146765079 146766045 -55562302 - L1PA4 LINE L1 0 6155 5192 5274 32 0 23 chr4 146766045 146766709 -55561638 + L1PA4 LINE L1 4540 5188 -958 254 215 15 0 chr4 146766705 146766770 -55561577 + L1MCc LINE L1 3988 4053 -2888 * 351 373 169 8 chr4 146766770 146767148 -55561199 - L2 LINE L2 -535 2779 2341 424 357 105 10 chr4 146767175 146767469 -55560878 - L2 LINE L2 -1209 2105 1784 4279 206 60 20 chr4 146768262 146769354 -55558993 - Charlie1 DNA MER1_type -6 2755 1620 218 228 25 0 chr4 146769370 146769449 -55558898 + (TA)n Simple_repeat Simple_repeat 2 82 0 912 195 53 53 chr4 146769449 146769675 -55558672 - Charlie1 DNA MER1_type -1108 1653 1428 6900 14 0 0 chr4 146770586 146771372 -55556975 - L1PA2 LINE L1 0 6155 5370 843 19 0 0 chr4 146771368 146771475 -55556872 + L1PA2 LINE L1 5252 5358 -788 * 413 292 12 47 chr4 146771631 146771802 -55556545 - MIR SINE MIR 0 262 98 22 35 0 0 chr4 146771868 146771897 -55556450 + AT_rich Low_complexity Low_complexity 1 29 0 287 327 55 40 chr4 146772141 146772340 -55556007 + L1ME LINE L1 5600 5801 -369 480 303 0 62 chr4 146772495 146772589 -55555758 + MER5B DNA MER1_type 1 80 -98 2075 132 0 0 chr4 146772589 146772885 -55555462 - AluSq SINE Alu -17 296 1 480 303 0 62 chr4 146772885 146772968 -55555379 + MER5B DNA MER1_type 80 167 -11 1363 209 71 35 chr4 146773209 146773615 -55554732 + LTR52 LTR ERVL 1 421 0 6239 177 32 10 chr4 146774018 146775869 -55552478 - L1MA5 LINE L1 0 6300 4388 198 0 0 0 chr4 146775869 146775891 -55552456 + (TTTTA)n Simple_repeat Simple_repeat 1 22 0 6239 177 32 10 chr4 146775891 146776207 -55552140 - L1MA5 LINE L1 -1912 4388 4080 2642 313 82 33 chr4 146776198 146777669 -55550678 - L1M2 LINE L1 -5306 1543 1 * 674 251 96 15 chr4 146777677 146778011 -55550336 - LTR37A LTR ERV1 -13 413 53 452 204 0 0 chr4 146778033 146778126 -55550221 - Ricksha_b DNA DNA -8 1643 1551 646 95 0 0 chr4 146778140 146778235 -55550112 - MLT2A2 LTR ERVL 0 453 359 * 1768 128 0 4 chr4 146778233 146778490 -55549857 - MLT2A2 LTR ERVL -197 256 1 4316 178 38 50 chr4 146778500 146779566 -55548781 - Ricksha_b DNA DNA -109 1145 1 404 284 129 7 chr4 146780303 146780458 -55547889 - L2 LINE L2 -335 2978 2805 182 259 267 17 chr4 146831338 146831454 -55496893 + L2 LINE L2 3164 3308 -5 2200 95 0 7 chr4 146833058 146833353 -55494994 + AluSc SINE Alu 3 295 -14 347 278 74 28 chr4 146834191 146834774 -55493573 - L1ME4a LINE L1 -87 7955 5664 932 105 0 0 chr4 146834774 146834898 -55493449 + AluSx SINE Alu 1 124 -188 2138 273 77 23 chr4 146835005 146835854 -55492493 + L1ME3A LINE L1 5215 6115 -55 2042 144 0 13 chr4 146835854 146836167 -55492180 - AluSx SINE Alu -3 309 1 2138 273 77 23 chr4 146836167 146836213 -55492134 + L1ME3A LINE L1 6115 6157 -13 291 317 41 32 chr4 146836230 146836571 -55491776 + L1M4 LINE L1 2533 2876 -3270 666 173 194 0 chr4 146836574 146836713 -55491634 + AluSx SINE Alu 134 299 -11 536 325 93 16 chr4 146836717 146837093 -55491254 + L1M4 LINE L1 2874 3278 -2868 791 346 66 29 chr4 146837256 146838013 -55490334 + L1M4 LINE L1 2865 3649 -2497 353 200 267 0 chr4 146838028 146838095 -55490252 - MER58C DNA MER1_type -2222 198 150 282 73 0 0 chr4 146838095 146838136 -55490211 + (TG)n Simple_repeat Simple_repeat 2 42 0 353 200 267 0 chr4 146838136 146838173 -55490174 - MER58C DNA MER1_type -2270 150 66 961 216 0 0 chr4 146838261 146838432 -55489915 + MER58B DNA MER1_type 168 338 -3 251 313 128 6 chr4 146838968 146839147 -55489200 + LTR16A1 LTR ERVL 194 394 -63 351 351 24 0 chr4 146839249 146839414 -55488933 + HERV16 LTR ERVL 68 236 -4760 391 272 121 66 chr4 146839420 146839799 -55488548 + L1M4 LINE L1 4056 4455 -1691 2463 65 0 7 chr4 146840364 146840671 -55487676 - AluY SINE Alu -6 305 1 2027 138 20 0 chr4 146840777 146841082 -55487265 - AluSq SINE Alu -2 311 1 315 0 0 0 chr4 146841085 146841120 -55487227 + (TA)n Simple_repeat Simple_repeat 2 36 0 2211 105 0 6 chr4 146841123 146841437 -55486910 - AluSx SINE Alu 0 312 1 287 259 91 42 chr4 146841544 146841687 -55486660 + MIR SINE MIR 91 240 -22 1841 161 0 16 chr4 146841980 146842285 -55486062 - AluJb SINE Alu -10 302 3 183 156 0 0 chr4 146842582 146842614 -55485733 + GA-rich Low_complexity Low_complexity 3 34 0 940 299 105 20 chr4 146842622 146843232 -55485115 - L1MC4 LINE L1 -491 7551 6859 398 270 86 77 chr4 146843227 146843775 -55484572 - L1M3 LINE L1 -740 5431 4870 * 2099 136 8 51 chr4 146843775 146844164 -55484183 - L1PA16 LINE L1 -9 6157 5786 398 270 86 77 chr4 146844164 146844538 -55483809 - L1M3 LINE L1 -1301 4870 4501 2470 54 0 0 chr4 146844573 146844870 -55483477 + AluY SINE Alu 1 297 -14 663 124 0 0 chr4 146845128 146845225 -55483122 - AluS SINE Alu -215 97 1 1071 278 53 27 chr4 146845349 146845723 -55482624 - L1ME3A LINE L1 0 6170 5787 566 281 62 45 chr4 146845737 146846075 -55482272 - L1ME LINE L1 -4923 1196 848 300 323 82 85 chr4 146846104 146846386 -55481961 - L1ME LINE L1 -5288 831 551 23 0 0 0 chr4 146846765 146846788 -55481559 + AT_rich Low_complexity Low_complexity 1 23 0 654 331 24 8 chr4 146846907 146847161 -55481186 + MIR SINE MIR 5 262 0 366 378 55 21 chr4 146848789 146849027 -55479320 + L2 LINE L2 2824 3069 -203 1688 195 32 32 chr4 146849363 146849733 -55478614 - MLT1A2 LTR MaLR 0 374 5 1602 179 128 40 chr4 146849733 146850085 -55478262 - MSTD LTR MaLR -13 383 1 1580 176 11 0 chr4 146850408 146850669 -55477678 - AluJo SINE Alu -48 264 1 637 154 74 25 chr4 146850763 146850925 -55477422 + MER53 DNA DNA 18 187 -2 23 0 0 0 chr4 146851268 146851291 -55477056 + AT_rich Low_complexity Low_complexity 1 23 0 197 211 53 53 chr4 146851942 146852018 -55476329 + MIR SINE MIR 146 221 -41 23 54 0 0 chr4 146853823 146853860 -55474487 + AT_rich Low_complexity Low_complexity 1 37 0 232 255 20 0 chr4 146855765 146855816 -55472531 + Charlie5 DNA MER1_type 13 64 -2548 285 174 78 113 chr4 146855861 146855976 -55472371 + Charlie5 DNA MER1_type 2514 2624 0 21 0 0 0 chr4 146856631 146856652 -55471695 + AT_rich Low_complexity Low_complexity 1 21 0 1543 183 7 21 chr4 146856652 146856941 -55471406 + AluJo SINE Alu 1 285 -27 270 0 0 0 chr4 146856941 146856971 -55471376 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 760 247 0 21 chr4 146857116 146857302 -55471045 + MER63A DNA MER1_type 1 182 -28 540 161 0 0 chr4 146857322 146857409 -55470938 + MER58B DNA MER1_type 255 341 0 207 176 0 0 chr4 146857549 146857583 -55470764 + (TG)n Simple_repeat Simple_repeat 1 34 0 213 347 105 0 chr4 146857890 146857985 -55470362 - L2 LINE L2 0 3272 3168 246 62 0 0 chr4 146859739 146859771 -55468576 + (A)n Simple_repeat Simple_repeat 1 32 0 276 141 51 0 chr4 146859910 146859988 -55468359 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 4705 141 45 12 chr4 146860308 146861145 -55467202 - L1PA16 LINE L1 -19 6147 5283 247 262 39 71 chr4 146861481 146861773 -55466574 + L1M4 LINE L1 3553 3835 -2311 252 149 54 14 chr4 146861944 146862018 -55466329 + (TA)n Simple_repeat Simple_repeat 2 78 0 1984 121 50 0 chr4 146862043 146862341 -55466006 + AluSq SINE Alu 1 313 0 627 298 90 48 chr4 146862343 146863245 -55465102 + L1M4 LINE L1 4125 5064 -1082 337 261 65 11 chr4 146863456 146863548 -55464799 + L2 LINE L2 3209 3305 -8 195 42 0 0 chr4 146863716 146863740 -55464607 + (TG)n Simple_repeat Simple_repeat 1 24 0 843 291 146 41 chr4 146863859 146864535 -55463812 + MER52A LTR ERV1 663 1409 -346 253 247 14 0 chr4 146864549 146864622 -55463725 + MER52A LTR ERV1 1663 1736 -19 512 296 68 38 chr4 146865098 146865928 -55462419 + L1ME LINE L1 2676 3566 -2580 335 292 112 0 chr4 146865946 146866107 -55462240 + L1ME LINE L1 5609 5787 -383 269 281 37 24 chr4 146867914 146867996 -55460351 - L2 LINE L2 0 3272 3190 353 244 9 43 chr4 146868558 146868610 -55459737 + GA-rich Low_complexity Low_complexity 4 56 -58 1795 154 170 14 chr4 146868610 146868980 -55459367 - MSTA LTR MaLR 0 428 1 353 244 9 43 chr4 146868980 146869042 -55459305 + GA-rich Low_complexity Low_complexity 56 114 0 254 238 24 24 chr4 146869090 146869174 -55459173 + CT-rich Low_complexity Low_complexity 3 86 0 1591 152 17 10 chr4 146871254 146871543 -55456804 - L1PB4 LINE L1 -11 6145 5855 793 141 16 0 chr4 146871564 146871692 -55456655 - THE1C LTR MaLR 0 375 246 278 293 89 0 chr4 146871939 146872096 -55456251 + L1ME4a LINE L1 5722 5892 -229 668 79 0 10 chr4 146872097 146872198 -55456149 + (GGAA)n Simple_repeat Simple_repeat 4 103 0 27 73 0 0 chr4 146872262 146872317 -55456030 + AT_rich Low_complexity Low_complexity 1 55 0 678 155 150 66 chr4 146872321 146872476 -55455871 + L1MA9 LINE L1 6068 6249 -63 219 36 0 0 chr4 146872476 146872504 -55455843 + (TA)n Simple_repeat Simple_repeat 1 28 0 678 155 150 66 chr4 146872504 146872574 -55455773 + L1MA9 LINE L1 6249 6312 0 314 289 22 0 chr4 146873174 146873264 -55455083 + GA-rich Low_complexity Low_complexity 2 93 0 877 118 0 12 chr4 146873488 146873628 -55454719 + L1M1 LINE L1 5517 5644 -656 555 200 8 8 chr4 146873628 146873748 -55454599 + L1MA10 LINE L1 6215 6334 0 648 309 42 0 chr4 146874796 146875013 -55453334 - MIR SINE MIR -25 237 12 2424 78 0 3 chr4 146875804 146876113 -55452234 + AluY SINE Alu 1 308 -3 2103 113 27 3 chr4 146877416 146877752 -55450595 + L1PA13 LINE L1 5820 6163 0 353 336 15 8 chr4 146877853 146877987 -55450360 - MIR SINE MIR -120 142 8 280 284 105 32 chr4 146878179 146878274 -55450073 - L2 LINE L2 -10 3303 3202 1982 130 16 12 chr4 146878337 146878660 -55449687 + L1PB4 LINE L1 5820 6143 -13 30 0 0 0 chr4 146878660 146878690 -55449657 + AT_rich Low_complexity Low_complexity 1 30 0 33 25 0 0 chr4 146880274 146880314 -55448033 + AT_rich Low_complexity Low_complexity 1 40 0 2295 94 0 3 chr4 146880512 146880810 -55447537 - AluSg SINE Alu -12 298 2 393 310 74 53 chr4 146881250 146881534 -55446813 + L2 LINE L2 3008 3297 -16 23 33 0 0 chr4 146882009 146882039 -55446308 + AT_rich Low_complexity Low_complexity 1 30 0 184 317 24 24 chr4 146882096 146882178 -55446169 - MIR SINE MIR -154 108 27 23 68 0 0 chr4 146882627 146882671 -55445676 + AT_rich Low_complexity Low_complexity 1 44 0 25 83 0 0 chr4 146885160 146885220 -55443127 + AT_rich Low_complexity Low_complexity 1 60 0 245 305 37 24 chr4 146885253 146885335 -55443012 - MIR SINE MIR -115 147 65 246 304 89 42 chr4 146886450 146886618 -55441729 - MIR SINE MIR -10 252 77 21 0 0 0 chr4 146888139 146888160 -55440187 + AT_rich Low_complexity Low_complexity 1 21 0 540 286 89 10 chr4 146888588 146888791 -55439556 + MIR SINE MIR 2 220 -42 687 294 119 30 chr4 146889135 146889682 -55438665 - L2 LINE L2 -36 3277 2675 463 258 109 52 chr4 146889766 146889995 -55438352 - MIR SINE MIR 0 262 21 1183 181 34 0 chr4 146890694 146890898 -55437449 + MLT1D LTR MaLR 6 216 -289 2294 62 26 13 chr4 146890925 146891231 -55437116 - AluY SINE Alu -1 310 1 2095 158 34 3 chr4 146892514 146892868 -55435479 - MLT1A1 LTR MaLR 0 365 1 294 29 0 0 chr4 146893189 146893224 -55435123 + (CA)n Simple_repeat Simple_repeat 1 35 0 504 254 67 31 chr4 146893701 146893894 -55434453 - MER63A DNA MER1_type -4 206 7 219 69 0 0 chr4 146894238 146894267 -55434080 + (CA)n Simple_repeat Simple_repeat 2 30 0 22 56 0 0 chr4 146894573 146894609 -55433738 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr4 146894665 146894689 -55433658 + AT_rich Low_complexity Low_complexity 1 24 0 1990 103 7 53 chr4 146894891 146895192 -55433155 - AluSg SINE Alu -23 287 1 608 362 89 37 chr4 146895481 146895744 -55432603 + L2 LINE L2 2868 3161 -152 207 100 0 0 chr4 146895744 146895774 -55432573 + (CA)n Simple_repeat Simple_repeat 2 31 0 608 362 89 37 chr4 146895774 146895916 -55432431 + L2 LINE L2 3161 3294 -19 29 0 0 0 chr4 146896235 146896264 -55432083 + AT_rich Low_complexity Low_complexity 1 29 0 269 272 160 8 chr4 146896432 146896557 -55431790 - MIR SINE MIR 0 262 119 3205 185 39 18 chr4 146896721 146897461 -55430886 + L1MC3 LINE L1 7008 7763 -22 258 32 0 0 chr4 146897483 146897514 -55430833 + (CA)n Simple_repeat Simple_repeat 2 32 0 312 266 110 17 chr4 146899297 146899470 -55428877 - MIR SINE MIR -6 256 68 186 43 0 0 chr4 146901403 146901426 -55426921 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 783 178 0 0 chr4 146901428 146901557 -55426790 - FRAM SINE Alu -22 154 26 567 0 0 0 chr4 146901582 146901645 -55426702 + (GA)n Simple_repeat Simple_repeat 2 64 0 1422 175 26 0 chr4 146902568 146902796 -55425551 + AluJb SINE Alu 61 294 -18 1964 121 7 4 chr4 146903077 146903358 -55424989 + AluSq SINE Alu 1 282 -31 1638 222 54 71 chr4 146903402 146903991 -55424356 - MLT1E LTR MaLR 0 593 15 309 51 0 0 chr4 146904676 146904684 -55423663 + (CA)n Simple_repeat Simple_repeat 1 47 0 309 51 0 0 chr4 146904684 146904723 -55423624 + (CA)n Simple_repeat Simple_repeat 2 40 0 238 323 129 48 chr4 146905340 146905526 -55422821 + L3 LINE CR1 927 1127 -450 1531 195 9 92 chr4 146905586 146906011 -55422336 - MLT1B LTR MaLR 0 390 1 1017 193 108 5 chr4 146906012 146906235 -55422112 - MLT1A1 LTR MaLR 0 365 120 374 318 39 19 chr4 146906236 146906390 -55421957 + L3 LINE CR1 1219 1375 -202 287 342 42 17 chr4 146906509 146906629 -55421718 + MIR SINE MIR 108 230 -32 180 364 50 8 chr4 146906712 146906833 -55421514 + L3 LINE CR1 1450 1575 -2 281 348 49 86 chr4 146907249 146907414 -55420933 - L2 LINE L2 -31 3241 3092 1845 158 137 11 chr4 146907414 146907794 -55420553 + MSTA LTR MaLR 1 428 0 281 348 49 86 chr4 146907794 146907953 -55420394 - L2 LINE L2 -180 3092 2929 215 321 36 0 chr4 146909032 146909088 -55419259 + L2 LINE L2 3215 3272 0 896 225 21 46 chr4 146909113 146909353 -55418994 + MIR SINE MIR 1 234 -28 255 341 120 12 chr4 146909872 146910039 -55418308 + MIR SINE MIR 8 192 -70 4090 194 93 3 chr4 146910095 146911071 -55417276 - Tigger6a DNA MER2_type -17 1066 3 383 345 63 30 chr4 146911657 146911956 -55416391 + L1ME4a LINE L1 5589 5897 -224 2301 209 15 17 chr4 146912396 146912869 -55415478 - MER70A LTR ERVL 0 472 1 278 222 0 12 chr4 146912873 146912954 -55415393 + CT-rich Low_complexity Low_complexity 2 81 0 204 273 73 0 chr4 146913439 146913494 -55414853 + MER5A DNA MER1_type 63 121 -68 5964 153 25 37 chr4 146913529 146914002 -55414345 - L1PA14 LINE L1 -3 6158 5681 2406 99 0 0 chr4 146914002 146914306 -55414041 + AluSc SINE Alu 1 304 -5 5964 153 25 37 chr4 146914306 146915878 -55412469 - L1PA14 LINE L1 -480 5681 4073 2412 99 50 20 chr4 146916204 146916552 -55411795 - L1PB1 LINE L1 0 6151 5788 288 0 0 0 chr4 146916552 146916584 -55411763 + (TG)n Simple_repeat Simple_repeat 2 33 0 2412 99 50 20 chr4 146916584 146916638 -55411709 - L1PB1 LINE L1 -363 5788 5737 195 315 0 0 chr4 146916651 146916705 -55411642 + MER5A DNA MER1_type 136 189 0 618 306 49 31 chr4 146916949 146917237 -55411110 + MLT1I LTR MaLR 98 390 -19 342 322 0 43 chr4 146919169 146919284 -55409063 + MER5A DNA MER1_type 23 132 -57 709 237 54 9 chr4 146919712 146919936 -55408411 + L1MEc LINE L1 29 262 -6134 1785 231 54 35 chr4 146919953 146920695 -55407652 + L1M4 LINE L1 2762 3517 -2629 416 186 136 38 chr4 146920703 146920871 -55407476 + L1MA10 LINE L1 5983 6331 -3 942 201 82 34 chr4 146924692 146924960 -55403387 - MLT1C LTR MaLR 0 467 187 2439 77 0 0 chr4 146925794 146926094 -55402253 - AluY SINE Alu -11 300 1 185 346 86 0 chr4 146927614 146927695 -55400652 + MIR SINE MIR 163 250 -12 1019 89 17 28 chr4 146928115 146928295 -55400052 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 354 169 0 0 chr4 146928327 146928392 -55399955 + GA-rich Low_complexity Low_complexity 4 68 0 221 312 111 53 chr4 146929518 146929707 -55398640 + L3 LINE CR1 1374 1573 -4 32 43 0 0 chr4 146930044 146930090 -55398257 + AT_rich Low_complexity Low_complexity 1 46 0 3638 130 4 0 chr4 146930368 146930920 -55397427 - MER41A LTR ERV1 0 554 1 2034 116 102 15 chr4 146931375 146931710 -55396637 - THE1B LTR MaLR 0 364 1 6386 88 12 0 chr4 146931712 146932592 -55395755 - THE1B-int LTR MaLR -2 1578 688 267 30 0 0 chr4 146932587 146932620 -55395727 - THE1B-int LTR MaLR -1547 33 1 * 1570 134 76 24 chr4 146932620 146932910 -55395437 - THE1B LTR MaLR 0 364 60 281 109 18 0 chr4 146933954 146934009 -55394338 + (TG)n Simple_repeat Simple_repeat 2 57 0 198 301 151 0 chr4 146936248 146936321 -55392026 - MIR SINE MIR -67 195 112 421 309 73 22 chr4 146936384 146936562 -55391785 - MIR SINE MIR -31 231 45 356 94 19 0 chr4 146936566 146936619 -55391728 + U7 snRNA snRNA 9 62 -1 183 42 0 0 chr4 146936636 146936660 -55391687 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1511 153 69 25 chr4 146936848 146937123 -55391224 + AluJo SINE Alu 1 287 -25 2240 90 0 3 chr4 146937481 146937769 -55390578 + AluSq SINE Alu 1 287 -26 209 57 29 0 chr4 146937769 146937804 -55390543 + (TA)n Simple_repeat Simple_repeat 2 37 0 368 313 155 7 chr4 146938019 146938316 -55390031 + MLT1J2 LTR MaLR 67 407 -43 253 186 0 86 chr4 146938371 146938441 -55389906 + MIR SINE MIR 145 208 -54 207 0 0 0 chr4 146938538 146938561 -55389786 + (CA)n Simple_repeat Simple_repeat 2 24 0 26 0 0 0 chr4 146939240 146939266 -55389081 + AT_rich Low_complexity Low_complexity 1 26 0 28 29 0 0 chr4 146939735 146939770 -55388577 + AT_rich Low_complexity Low_complexity 1 35 0 1590 175 52 50 chr4 146939834 146940217 -55388130 - MLT1B LTR MaLR -5 385 2 281 344 80 85 chr4 146940370 146940783 -55387564 - L2 LINE L2 -6 3266 2856 259 224 13 26 chr4 146940822 146940898 -55387449 + MER3 DNA MER1_type 2 76 -133 1013 229 48 4 chr4 146941036 146941307 -55387040 + LTR43 LTR ERV1 176 458 -144 226 245 20 41 chr4 146941297 146941327 -55387020 + MER41E LTR ERV1 358 387 -125 * 2248 123 3 0 chr4 146941327 146941637 -55386710 - AluSp SINE Alu -2 311 1 226 245 20 41 chr4 146941637 146941704 -55386643 + MER41E LTR ERV1 387 453 -59 696 182 24 47 chr4 146941719 146941889 -55386458 + MER3 DNA MER1_type 44 209 0 975 202 53 107 chr4 146942070 146942501 -55385846 - MLT2D LTR ERVL -6 408 1 520 376 34 31 chr4 146943880 146944207 -55384140 - L2 LINE L2 -555 2759 2432 1553 233 50 46 chr4 146944354 146944857 -55383490 + MLT1D LTR MaLR 1 505 0 2630 114 2 2 chr4 146947571 146947966 -55380381 + L1PB3 LINE L1 5759 6153 -1 275 345 109 9 chr4 146948024 146948134 -55380213 + L2 LINE L2 3142 3262 -10 496 304 109 35 chr4 146949556 146949786 -55378561 + MIR SINE MIR 12 258 -4 5752 91 1 2 chr4 146950607 146951420 -55376927 - L1PA8 LINE L1 -948 5198 4387 6875 71 9 0 chr4 146951420 146952406 -55375941 + L1PA8 LINE L1 5179 6172 0 2008 107 33 4 chr4 146952409 146952712 -55375635 + AluSc SINE Alu 3 313 0 882 207 100 9 chr4 146952800 146953068 -55375279 - MLT1D LTR MaLR 0 505 176 1934 152 0 10 chr4 146953125 146953422 -55374925 + AluSx SINE Alu 1 294 -18 867 179 0 0 chr4 146953473 146953618 -55374729 - L1P LINE L1 -5248 898 754 40159 72 6 2 chr4 146953782 146959900 -55368447 + L1PA5 LINE L1 11 6153 -1 4185 118 15 24 chr4 146959960 146960635 -55367712 + Tigger2 DNA MER2_type 86 754 -1964 1032 156 147 5 chr4 146960693 146960917 -55367430 + Tigger2 DNA MER2_type 2452 2707 -11 502 178 11 0 chr4 146960927 146961017 -55367330 + MER46C DNA MER2_type 247 337 -1 243 263 105 88 chr4 146961150 146961264 -55367083 + HAL1 LINE L1 617 732 -1775 279 265 96 56 chr4 146961391 146961640 -55366707 + HAL1 LINE L1 925 1183 -1324 2378 148 36 5 chr4 146961646 146962059 -55366288 - MSTA LTR MaLR -2 426 1 577 295 136 12 chr4 146962062 146962408 -55365939 + HAL1 LINE L1 1381 1769 -738 857 266 23 41 chr4 146962551 146962942 -55365405 + HAL1 LINE L1 2010 2393 -114 836 269 23 41 chr4 146963486 146963877 -55364470 + HAL1 LINE L1 2010 2393 -114 254 309 64 43 chr4 146964228 146964322 -55364025 - L2 LINE L2 -1 3271 3176 1775 142 42 3 chr4 146964800 146965111 -55363236 - L1MC3 LINE L1 -10 7775 7453 1167 213 0 0 chr4 146965112 146965328 -55363019 - MLT1D LTR MaLR -1 504 289 2821 203 15 38 chr4 146965332 146965576 -55362771 - L1MC3 LINE L1 -326 7459 7211 1785 181 50 112 chr4 146965576 146966113 -55362234 + MLT1D LTR MaLR 2 505 0 2821 203 15 38 chr4 146966113 146966529 -55361818 - L1MC3 LINE L1 -574 7211 6814 575 299 113 38 chr4 146966555 146966900 -55361447 - MLT1L LTR MaLR -123 492 122 520 246 151 88 chr4 146967311 146967628 -55360719 + MLT2C1 LTR ERVL 13 349 -48 229 125 36 0 chr4 146967651 146967707 -55360640 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 417 330 57 5 chr4 146968503 146968697 -55359650 + L2 LINE L2 3109 3312 -1 219 352 22 0 chr4 146968702 146968793 -55359554 + MIR SINE MIR 119 211 -51 307 313 45 9 chr4 146969165 146969277 -55359070 - L3b LINE CR1 -172 1411 1296 310 177 186 32 chr4 146969467 146969591 -55358756 + L1ME4a LINE L1 5979 6121 0 4628 151 26 25 chr4 146971583 146973126 -55355221 + L1MA3 LINE L1 2885 4428 -3137 1672 150 53 92 chr4 146973137 146973516 -55354831 - THE1B LTR MaLR 0 364 1 11411 108 4 2 chr4 146973522 146975094 -55353253 - THE1B-int LTR MaLR -6 1574 1 1950 148 57 28 chr4 146975096 146975448 -55352899 - THE1B LTR MaLR -2 362 1 12293 150 13 7 chr4 146975459 146978712 -55349635 + L1MA3 LINE L1 4445 7717 -7 284 91 18 0 chr4 146978706 146978761 -55349586 + L1MA2 LINE L1 6245 6300 -4 * 188 98 0 24 chr4 146978765 146978806 -55349541 + (TTTAA)n Simple_repeat Simple_repeat 3 42 0 1950 151 0 0 chr4 146978951 146979258 -55349089 - AluSx SINE Alu 0 307 1 239 348 56 17 chr4 146979285 146979463 -55348884 + L2 LINE L2 1954 2138 -1176 586 314 206 17 chr4 146980035 146980618 -55347729 + L2 LINE L2 2284 2976 -338 257 253 58 46 chr4 146982607 146982694 -55345653 - L3 LINE CR1 -10 1567 1480 403 345 65 26 chr4 146982723 146982955 -55345392 - L3 LINE CR1 -187 1390 1150 25 0 0 0 chr4 146985052 146985077 -55343270 + AT_rich Low_complexity Low_complexity 1 25 0 774 137 60 0 chr4 146985497 146985665 -55342682 + L1MA7 LINE L1 6112 6289 -2 410 263 41 82 chr4 146987097 146987291 -55341056 - MER5A DNA MER1_type -3 186 1 1558 289 95 24 chr4 146987686 146988274 -55340073 - MER115 DNA AcHobo -29 664 35 1962 109 33 40 chr4 146988331 146988634 -55339713 - AluSx SINE Alu -11 301 1 5037 90 12 35 chr4 146988820 146989565 -55338782 - L1PA10 LINE L1 -3 6165 5438 221 271 36 121 chr4 146989622 146989762 -55338585 + MIR3 SINE MIR 14 141 -67 364 250 120 68 chr4 146990326 146990518 -55337829 - MLT1E LTR MaLR -6 587 386 1090 210 59 13 chr4 146990527 146990765 -55337582 + MLT1D LTR MaLR 249 497 -8 27 29 0 0 chr4 146990782 146990816 -55337531 + AT_rich Low_complexity Low_complexity 1 34 0 2478 188 85 28 chr4 146991789 146991886 -55336461 - L1MA9 LINE L1 -38 6274 6184 246 32 0 0 chr4 146991886 146991917 -55336430 + (TG)n Simple_repeat Simple_repeat 2 32 0 2478 188 85 28 chr4 146991917 146992452 -55335895 - L1MA9 LINE L1 -128 6184 5606 181 342 160 41 chr4 146992585 146993097 -55335250 - L2 LINE L2 -679 2635 2063 431 254 45 60 chr4 146996808 146996942 -55331405 - L2 LINE L2 0 3272 3141 1349 201 55 52 chr4 146997177 146997541 -55330806 + MLT1A1 LTR MaLR 1 365 0 1664 233 22 6 chr4 146998040 146998397 -55329950 + MLT1A2 LTR MaLR 1 363 -11 2174 112 0 16 chr4 146998816 146999130 -55329217 + AluSg1 SINE Alu 1 309 0 188 364 0 27 chr4 147001452 147001562 -55326785 - MIR3 SINE MIR -3 205 99 490 249 181 6 chr4 147003874 147003992 -55324355 + MER3 DNA MER1_type 2 98 -111 185 0 0 39 chr4 147003992 147004018 -55324329 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 490 249 181 6 chr4 147004018 147004076 -55324271 + MER3 DNA MER1_type 98 209 0 288 341 85 18 chr4 147004439 147004662 -55323685 + L3b LINE CR1 1203 1440 -143 590 320 97 9 chr4 147005973 147006201 -55322146 + MIR SINE MIR 15 262 0 541 234 9 0 chr4 147010301 147010408 -55317939 + MER81 DNA DNA 5 112 -2 666 257 123 46 chr4 147010650 147010919 -55317428 + L2 LINE L2 2804 3115 -198 2096 99 3 3 chr4 147010919 147011241 -55317106 - AluSx SINE Alu 0 322 1 666 257 123 46 chr4 147011241 147011359 -55316988 + L2 LINE L2 3115 3222 -91 742 317 4 21 chr4 147011375 147011618 -55316729 + MIR SINE MIR 15 253 -9 2096 114 3 0 chr4 147011780 147012070 -55316277 - AluSx SINE Alu -21 291 1 2719 140 7 12 chr4 147012753 147013181 -55315166 - MSTB LTR MaLR 0 426 1 2053 155 0 0 chr4 147013970 147014280 -55314067 + AluSx SINE Alu 1 310 -2 428 269 149 0 chr4 147016123 147016264 -55312083 + MIR3 SINE MIR 19 180 -28 420 272 53 53 chr4 147017054 147017223 -55311124 + MER5B DNA MER1_type 1 169 -9 221 370 20 10 chr4 147017436 147017536 -55310811 - MIR SINE MIR -160 102 2 2130 105 3 0 chr4 147017630 147017941 -55310406 + AluSp SINE Alu 1 312 0 433 244 30 44 chr4 147018811 147018946 -55309401 + MIR SINE MIR 109 241 -21 200 141 71 12 chr4 147019343 147019428 -55308919 + (CA)n Simple_repeat Simple_repeat 2 91 0 208 246 77 15 chr4 147019720 147019785 -55308562 - MIR SINE MIR -43 219 151 1155 149 10 16 chr4 147019845 147020039 -55308308 - AluJo SINE Alu -119 193 1 236 308 173 10 chr4 147021468 147021572 -55306775 + MIR3 SINE MIR 34 154 -54 249 255 21 0 chr4 147021799 147021893 -55306454 - MER69 DNA AcHobo -62 2464 2369 25 37 0 37 chr4 147022308 147022340 -55306007 + AT_rich Low_complexity Low_complexity 1 32 -20 659 106 10 0 chr4 147022340 147022444 -55305903 + L1MB2 LINE L1 6063 6167 -4 25 37 0 37 chr4 147022444 147022465 -55305882 + AT_rich Low_complexity Low_complexity 32 52 0 1392 201 106 8 chr4 147022471 147022601 -55305746 - MER69 DNA AcHobo -391 2135 2019 342 0 0 0 chr4 147022601 147022639 -55305708 + (TAA)n Simple_repeat Simple_repeat 3 40 0 1392 201 106 8 chr4 147022639 147022896 -55305451 - MER69 DNA AcHobo -507 2019 1710 1513 141 61 64 chr4 147022915 147023212 -55305135 - AluSx SINE Alu -12 300 5 242 204 22 33 chr4 147023219 147023357 -55304990 - MER69 DNA AcHobo -893 1633 1451 1214 242 50 18 chr4 147023956 147024299 -55304048 - MER69 DNA AcHobo -869 357 4 276 310 60 26 chr4 147024304 147024420 -55303927 + L2 LINE L2 3193 3312 -1 263 325 46 10 chr4 147024975 147025172 -55303175 + L2 LINE L2 2005 2208 -1106 291 327 50 30 chr4 147025172 147025374 -55302973 + L2 LINE L2 2583 2788 -526 2145 155 35 44 chr4 147025378 147025932 -55302415 + MLT2A2 LTR ERVL 1 552 -2 206 289 31 52 chr4 147026032 147026129 -55302218 + L2 LINE L2 2966 3060 -212 1380 219 137 61 chr4 147027696 147028318 -55300029 - L1ME2 LINE L1 -31 6133 5465 342 286 14 0 chr4 147028646 147028716 -55299631 + L2 LINE L2 3160 3230 -42 209 276 184 0 chr4 147028789 147028887 -55299460 + MIR SINE MIR 91 206 -56 219 386 0 41 chr4 147029354 147029525 -55298822 + L2 LINE L2 2508 2671 -643 186 103 0 0 chr4 147029741 147029770 -55298577 + (A)n Simple_repeat Simple_repeat 1 29 0 758 295 52 16 chr4 147030627 147030878 -55297469 + MIR SINE MIR 1 260 -2 239 325 83 45 chr4 147030942 147031099 -55297248 + MIR SINE MIR 27 189 -73 187 283 33 33 chr4 147031157 147031217 -55297130 + L2 LINE L2 3209 3268 -4 14158 173 18 87 chr4 147031472 147035055 -55293292 + L1PA8 LINE L1 2 3337 -2809 6653 93 1 1 chr4 147035052 147036581 -55291766 + L1PA8 LINE L1 4589 6117 -55 * 189 206 0 0 chr4 147037322 147037356 -55290991 - L2 LINE L2 -15 3298 3265 * 267 231 7 163 chr4 147037327 147037474 -55290873 - MIR SINE MIR -14 248 125 377 299 24 16 chr4 147037477 147037604 -55290743 + L1ME LINE L1 4019 4146 -2000 1041 246 190 25 chr4 147037718 147038149 -55290198 - MLT1J LTR MaLR 0 511 10 342 290 75 30 chr4 147038156 147038556 -55289791 + L1ME LINE L1 4376 4793 -1353 203 380 28 19 chr4 147038781 147038889 -55289458 + MIR SINE MIR 13 121 -141 2044 250 51 8 chr4 147038966 147039434 -55288913 + MER77 LTR ERV1 114 601 -4 385 258 47 8 chr4 147039440 147039568 -55288779 + MIR SINE MIR 117 249 -13 283 302 63 48 chr4 147040002 147040191 -55288156 + L1ME LINE L1 5383 5574 -547 350 287 82 75 chr4 147040195 147040477 -55287870 + L2 LINE L2 1324 1607 -1707 746 277 195 37 chr4 147040478 147040965 -55287382 + L2 LINE L2 2001 2564 -750 403 262 80 70 chr4 147041312 147041785 -55286562 + L1M4 LINE L1 2453 2930 -3216 1184 300 115 6 chr4 147041792 147042428 -55285919 + L1MC4a LINE L1 5465 6169 -1639 410 270 92 32 chr4 147042444 147042734 -55285613 + L1M4 LINE L1 2944 3203 -2943 2361 65 10 3 chr4 147043027 147043335 -55285012 + AluY SINE Alu 1 310 -1 218 276 94 31 chr4 147043640 147043767 -55284580 + MIR3 SINE MIR 70 204 -4 267 247 21 32 chr4 147044276 147044369 -55283978 + MLT1H LTR MaLR 94 185 -364 21 36 0 0 chr4 147044953 147044981 -55283366 + AT_rich Low_complexity Low_complexity 1 28 0 817 144 0 0 chr4 147044981 147045099 -55283248 - FLAM_C SINE Alu -25 118 1 189 0 0 0 chr4 147045877 147045898 -55282449 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 297 0 0 0 chr4 147045897 147045930 -55282417 + (CA)n Simple_repeat Simple_repeat 2 34 0 1628 181 24 7 chr4 147046577 147046875 -55281472 - AluJb SINE Alu -9 303 1 22 0 0 0 chr4 147047025 147047047 -55281300 + AT_rich Low_complexity Low_complexity 1 22 0 1519 196 10 48 chr4 147047407 147047718 -55280629 - AluJo SINE Alu -13 299 1 3047 104 7 5 chr4 147047924 147048355 -55279992 + MER57B LTR ERV1 3 434 0 222 37 0 0 chr4 147048442 147048469 -55279878 + (A)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr4 147049063 147049085 -55279262 + AT_rich Low_complexity Low_complexity 1 22 0 769 169 8 0 chr4 147049085 147049215 -55279132 - FLAM_C SINE Alu -1 132 2 30 83 0 0 chr4 147049230 147049302 -55279045 + AT_rich Low_complexity Low_complexity 1 72 0 296 366 7 7 chr4 147049804 147049946 -55278401 + L2 LINE L2 3172 3313 0 1208 241 102 37 chr4 147049950 147050583 -55277764 - L2 LINE L2 -2 3311 2642 501 246 53 0 chr4 147051462 147051576 -55276771 - L2 LINE L2 -4 3309 3190 360 0 0 0 chr4 147052318 147052358 -55275989 + (TC)n Simple_repeat Simple_repeat 1 40 0 337 241 12 0 chr4 147052454 147052537 -55275810 + MLT1L LTR MaLR 532 615 0 909 249 103 62 chr4 147053159 147053656 -55274691 + MLT1H LTR MaLR 3 519 -30 743 88 18 0 chr4 147054199 147054312 -55274035 - L1PA6 LINE L1 0 6154 6040 1029 209 38 0 chr4 147054573 147054783 -55273564 - MER20 DNA MER1_type -1 218 1 744 225 72 22 chr4 147054792 147055014 -55273333 + MER106A DNA MER1_type 2 234 -2 931 299 103 20 chr4 147056032 147056490 -55271857 - L2 LINE L2 -1 3312 2817 1146 143 38 19 chr4 147056567 147056776 -55271571 - L1PA10 LINE L1 -21 6147 5935 * 2010 85 4 0 chr4 147056754 147057024 -55271323 + L1PA10 LINE L1 5680 5950 -218 14278 136 20 32 chr4 147058610 147060176 -55268171 - Tigger1 DNA MER2_type 0 2418 890 4112 31 0 0 chr4 147060176 147060663 -55267684 - L1PA4 LINE L1 -3 6152 5666 14278 136 20 32 chr4 147060663 147061543 -55266804 - Tigger1 DNA MER2_type -1528 890 1 330 317 77 0 chr4 147061991 147062095 -55266252 - L2 LINE L2 -15 3257 3146 306 0 0 0 chr4 147063536 147063570 -55264777 + (CA)n Simple_repeat Simple_repeat 2 35 0 264 273 239 48 chr4 147064299 147064713 -55263634 - L2 LINE L2 -571 2743 2251 379 284 200 5 chr4 147064739 147064929 -55263418 - HAL1 LINE L1 -1809 698 472 512 283 25 46 chr4 147065221 147065458 -55262889 + L1MC4a LINE L1 5594 5825 -1983 25 31 0 0 chr4 147065517 147065549 -55262798 + AT_rich Low_complexity Low_complexity 1 32 0 310 301 76 70 chr4 147065837 147066549 -55261798 + L1MC4 LINE L1 4734 5446 -675 1100 89 19 0 chr4 147066549 147066706 -55261641 - L1MB1 LINE L1 -3 6165 6006 310 301 76 70 chr4 147066706 147066838 -55261509 + L1MC4 LINE L1 5446 5576 -545 554 248 42 81 chr4 147066976 147067303 -55261044 + L1MC4 LINE L1 5580 5819 -302 2235 198 48 27 chr4 147067358 147067798 -55260549 + MLT2B1 LTR ERVL 3 451 -69 324 0 0 0 chr4 147067813 147067849 -55260498 + (CA)n Simple_repeat Simple_repeat 2 37 0 649 192 0 0 chr4 147067860 147067964 -55260383 - Tigger3(Golem) DNA MER2_type -20 3009 2906 292 125 21 0 chr4 147067964 147068012 -55260335 + Tigger3(Golem) DNA MER2_type 2838 2886 -143 486 171 12 0 chr4 147068129 147068211 -55260136 - Tigger3(Golem) DNA MER2_type -2929 100 18 244 214 0 0 chr4 147068250 147068306 -55260041 + L1MC4 LINE L1 6614 6669 -1373 239 119 0 24 chr4 147068307 147068349 -55259998 + MLT2B1 LTR ERVL 472 512 -8 14633 128 36 21 chr4 147068564 147069511 -55258836 + Tigger1 DNA MER2_type 1 932 -1486 2027 110 0 7 chr4 147069511 147069784 -55258563 + AluSx SINE Alu 24 294 -18 14633 128 36 21 chr4 147069784 147070262 -55258085 + Tigger1 DNA MER2_type 932 1401 -1017 11609 139 15 7 chr4 147070262 147072959 -55255388 - L1PA11 LINE L1 -2 6172 3444 14633 128 36 21 chr4 147072959 147073913 -55254434 + Tigger1 DNA MER2_type 1401 2417 -1 211 316 68 39 chr4 147077028 147077148 -55251199 + MIR SINE MIR 23 144 -64 22 0 0 0 chr4 147078831 147078853 -55249494 + AT_rich Low_complexity Low_complexity 1 22 0 7182 46 2 8 chr4 147079214 147080108 -55248239 - L1PA5 LINE L1 -1 6153 5265 6880 53 10 0 chr4 147080103 147080965 -55247382 - L1PA5 LINE L1 -1570 4576 3706 * 2143 118 42 9 chr4 147080958 147081288 -55247059 - L1P LINE L1 -5803 343 3 * 2136 135 0 0 chr4 147082677 147082981 -55245366 - AluSx SINE Alu -8 304 1 657 296 135 25 chr4 147083785 147084342 -55244005 - L1MC4a LINE L1 -583 5573 5289 235 133 67 33 chr4 147084383 147084443 -55243904 + L1ME LINE L1 5526 5577 -544 2126 115 3 3 chr4 147084470 147084774 -55243573 - AluSg SINE Alu -6 304 1 26 30 0 0 chr4 147084827 147084860 -55243487 + AT_rich Low_complexity Low_complexity 1 33 0 251 319 48 57 chr4 147084886 147085221 -55243126 - L1MC4a LINE L1 -1028 5118 4787 430 257 105 29 chr4 147085710 147085881 -55242466 - MIR SINE MIR -70 192 9 268 330 91 28 chr4 147085913 147086089 -55242258 + MER117 DNA MER1_type 6 192 -5 237 195 0 0 chr4 147086690 147086731 -55241616 + MLT1L LTR MaLR 164 204 -411 597 249 83 21 chr4 147087174 147087367 -55240980 + MIR SINE MIR 28 232 -30 389 353 26 13 chr4 147089495 147089648 -55238699 - L2 LINE L2 0 3313 3159 753 290 66 7 chr4 147089971 147090257 -55238090 - Tigger8 DNA MER2_type -350 316 14 251 276 13 13 chr4 147090650 147090726 -55237621 + MIR3 SINE MIR 87 162 -46 2345 91 0 0 chr4 147090755 147091051 -55237296 + AluSx SINE Alu 1 296 -16 1420 130 41 121 chr4 147091232 147091570 -55236777 - AluSx SINE Alu -1 311 1 458 186 116 23 chr4 147092678 147092807 -55235540 - MLT1I LTR MaLR -14 395 255 627 236 40 0 chr4 147092866 147093014 -55235333 - MLT1I LTR MaLR -239 170 17 423 314 146 26 chr4 147093301 147093527 -55234820 - MIR SINE MIR -8 254 2 22 0 0 0 chr4 147093537 147093559 -55234788 + AT_rich Low_complexity Low_complexity 1 22 0 311 294 98 0 chr4 147093857 147093949 -55234398 - MER91C DNA MER1_type -38 102 2 548 235 174 13 chr4 147095121 147095270 -55233077 - MER5A DNA MER1_type -8 181 9 1798 59 0 14 chr4 147096695 147096915 -55231432 + AluY SINE Alu 81 297 -14 12687 118 75 6 chr4 147096922 147100657 -55227690 - L1PB1 LINE L1 -23 6844 636 1033 168 10 0 chr4 147100659 147100855 -55227492 - L1PB1 LINE L1 -6663 200 3 201 74 0 0 chr4 147101729 147101756 -55226591 + (T)n Simple_repeat Simple_repeat 1 27 0 531 204 28 0 chr4 147101856 147101936 -55226411 + MER67A LTR ERV1 1 83 -460 528 192 66 78 chr4 147101936 147101981 -55226366 + MER67B LTR ERV1 1 45 -616 408 20 0 0 chr4 147101981 147102030 -55226317 + (CA)n Simple_repeat Simple_repeat 2 50 0 528 192 66 78 chr4 147102030 147102151 -55226196 + MER67B LTR ERV1 45 165 -496 * 1310 228 26 10 chr4 147102145 147102456 -55225891 + MER67B LTR ERV1 90 405 -256 223 149 43 0 chr4 147102457 147102504 -55225843 + T-rich Low_complexity Low_complexity 5 53 0 26950 94 14 13 chr4 147102515 147104323 -55224024 - L1PA7 LINE L1 -5 6149 4344 2461 70 7 0 chr4 147104323 147104623 -55223724 - AluY SINE Alu -9 302 1 26950 94 14 13 chr4 147104623 147107892 -55220455 - L1PA7 LINE L1 -1810 4344 1072 591 318 149 40 chr4 147108213 147108780 -55219567 - L2 LINE L2 -2 3311 2687 2439 313 109 8 chr4 147108852 147109909 -55218438 - L2 LINE L2 -926 2388 1225 862 300 104 24 chr4 147110279 147110702 -55217645 + MLT1J LTR MaLR 1 457 -54 565 201 254 18 chr4 147112216 147112385 -55215962 + MIR SINE MIR 51 259 -3 264 333 29 0 chr4 147113728 147113833 -55214514 - L2 LINE L2 -299 2973 2866 259 304 32 92 chr4 147114240 147114523 -55213824 + L2 LINE L2 2313 2578 -736 713 325 21 4 chr4 147114550 147114793 -55213554 + MIR SINE MIR 16 262 0 258 153 119 0 chr4 147115128 147115187 -55213160 - MER112 DNA MER1_type -194 66 1 3538 213 29 11 chr4 147115351 147116204 -55212143 - L1ME1 LINE L1 -4 6162 5294 200 284 88 59 chr4 147116480 147116582 -55211765 + L2 LINE L2 3184 3288 -25 551 370 70 58 chr4 147116716 147117113 -55211234 - L2 LINE L2 0 3272 2871 464 238 186 6 chr4 147117260 147117432 -55210915 + MIR SINE MIR 57 259 -3 334 186 88 161 chr4 147117594 147117787 -55210560 + MLT1J2 LTR MaLR 242 424 -26 2082 139 3 0 chr4 147117825 147118126 -55210221 + AluSx SINE Alu 1 302 -10 21 36 0 0 chr4 147118183 147118211 -55210136 + AT_rich Low_complexity Low_complexity 1 28 0 801 280 27 31 chr4 147118217 147118478 -55209869 + MIR SINE MIR 1 260 -2 832 178 0 7 chr4 147121198 147121333 -55207014 + AluJb SINE Alu 1 134 -178 851 186 7 0 chr4 147121624 147121764 -55206583 + FRAM SINE Alu 22 162 -14 1040 327 11 22 chr4 147121789 147122233 -55206114 + L1PA16 LINE L1 788 1226 -6348 291 313 0 0 chr4 147122516 147122615 -55205732 + L1PA16 LINE L1 2084 2182 -5399 11455 211 74 19 chr4 147122850 147127937 -55200410 + L1PA16 LINE L1 2182 7604 0 657 263 28 23 chr4 147128576 147128793 -55199554 - MER58A DNA MER1_type -1 223 6 198 103 0 0 chr4 147128858 147128887 -55199460 + (CA)n Simple_repeat Simple_repeat 1 29 0 210 150 0 0 chr4 147129044 147129084 -55199263 + (TA)n Simple_repeat Simple_repeat 1 40 0 12133 211 39 26 chr4 147129324 147130756 -55197591 + L1MC/D LINE L1 1 1412 -5961 5394 65 0 3 chr4 147130756 147131445 -55196902 + L1PA7 LINE L1 5466 6152 -2 12133 211 39 26 chr4 147131445 147135793 -55192554 + L1MC/D LINE L1 1412 6532 -841 2898 180 63 50 chr4 147135800 147136179 -55192168 - MER21A LTR ERV1 -29 902 508 2083 137 137 11 chr4 147136179 147136559 -55191788 + MSTA LTR MaLR 1 428 0 2898 180 63 50 chr4 147136559 147136878 -55191469 - MER21A LTR ERV1 -423 508 195 302 197 0 0 chr4 147136899 147136960 -55191387 - MER21A LTR ERV1 -843 88 28 725 140 0 39 chr4 147136969 147137118 -55191229 - MER21A LTR ERV1 -250 681 459 4334 143 35 33 chr4 147137122 147137977 -55190370 + L1MA5 LINE L1 5444 6300 0 351 213 226 32 chr4 147138111 147138266 -55190081 - MER5A DNA MER1_type -1 188 4 388 290 200 19 chr4 147139706 147139861 -55188486 + MER5A DNA MER1_type 1 183 -6 217 273 30 30 chr4 147140104 147140170 -55188177 + L2 LINE L2 3188 3253 -19 200 313 0 62 chr4 147141600 147141680 -55186667 + L2 LINE L2 3231 3305 -8 23 78 0 0 chr4 147142159 147142210 -55186137 + AT_rich Low_complexity Low_complexity 1 51 0 23528 152 10 15 chr4 147142233 147143465 -55184882 + L1P3 LINE L1 3 1239 -5222 189 74 0 0 chr4 147143465 147143492 -55184855 + (CAA)n Simple_repeat Simple_repeat 1 27 0 23528 152 10 15 chr4 147143492 147146844 -55181503 + L1P3 LINE L1 1239 4621 -1840 2185 107 3 7 chr4 147146844 147147142 -55181205 - AluSg SINE Alu -11 299 3 23528 152 10 15 chr4 147147142 147148040 -55180307 + L1P3 LINE L1 4621 5522 -939 22393 21 0 0 chr4 147148039 147152024 -55176323 + L1P1 LINE L1 1825 5809 -346 * 416 216 206 81 chr4 147153591 147153887 -55174460 - MLT1J2 LTR MaLR -24 426 94 259 285 139 29 chr4 147155645 147155782 -55172565 + MIR SINE MIR 79 230 -32 180 207 0 171 chr4 147155817 147155899 -55172448 + L2 LINE L2 3238 3305 -8 27 29 0 0 chr4 147156133 147156167 -55172180 + AT_rich Low_complexity Low_complexity 1 34 0 1550 192 0 39 chr4 147156382 147156689 -55171658 - AluJb SINE Alu -15 297 3 2096 125 3 3 chr4 147157411 147157707 -55170640 + AluSx SINE Alu 1 296 -16 9646 132 13 15 chr4 147157708 147158153 -55170194 + Tigger1 DNA MER2_type 796 1240 -1178 216 0 0 0 chr4 147158153 147158177 -55170170 + (TC)n Simple_repeat Simple_repeat 2 25 0 180 0 0 0 chr4 147158176 147158196 -55170151 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 9646 132 13 15 chr4 147158177 147158199 -55170148 + Tigger1 DNA MER2_type 1240 1261 -1157 2108 115 11 3 chr4 147158199 147158486 -55169861 - AluSg1 SINE Alu -20 289 1 9646 132 13 15 chr4 147158486 147159662 -55168685 + Tigger1 DNA MER2_type 1261 2418 0 2287 124 0 0 chr4 147159907 147160213 -55168134 - AluSq SINE Alu -7 306 1 445 289 44 0 chr4 147160389 147160503 -55167844 + L2 LINE L2 3148 3266 -6 961 119 26 31 chr4 147161254 147161448 -55166899 - L1MA9 LINE L1 -31 6281 6089 372 132 198 11 chr4 147161548 147161639 -55166708 - MLT2B2 LTR ERVL -407 108 1 * 554 203 8 0 chr4 147161639 147161754 -55166593 + LTR37A LTR ERV1 311 426 0 436 242 118 12 chr4 147161787 147161948 -55166399 + L1ME3A LINE L1 5985 6162 -8 22 0 0 0 chr4 147161955 147161977 -55166370 + AT_rich Low_complexity Low_complexity 1 22 0 944 202 19 66 chr4 147162039 147162356 -55165991 - L1MC4a LINE L1 -1788 6020 5719 269 357 16 24 chr4 147164039 147164165 -55164182 - MER5A DNA MER1_type -2 187 63 3176 160 152 31 chr4 147164302 147165039 -55163308 + LTR1B LTR ERV1 1 826 0 784 246 209 47 chr4 147166110 147166537 -55161810 - MLT1H LTR MaLR -5 544 6 207 258 0 32 chr4 147167235 147167297 -55161050 + (CATATA)n Simple_repeat Simple_repeat 5 64 0 3433 261 28 11 chr4 147167939 147169070 -55159277 + L1MEc LINE L1 22 1172 -5224 1928 137 0 14 chr4 147169274 147169559 -55158788 - AluJb SINE Alu -30 282 2 388 352 83 47 chr4 147170122 147170594 -55157753 + L2 LINE L2 2489 2977 -337 2079 98 20 52 chr4 147170926 147171231 -55157116 - AluSp SINE Alu -17 296 2 547 300 45 21 chr4 147171419 147171677 -55156670 - MIR SINE MIR 0 262 3 274 319 25 51 chr4 147172877 147173034 -55155313 + MIR SINE MIR 58 210 -52 377 290 101 43 chr4 147173102 147173309 -55155038 + HAL1 LINE L1 1 219 -2288 225 135 39 0 chr4 147173690 147173742 -55154605 + HAL1 LINE L1 2330 2383 -124 22 0 0 0 chr4 147173823 147173845 -55154502 + AT_rich Low_complexity Low_complexity 1 22 0 1623 164 7 4 chr4 147174059 147174333 -55154014 - AluSx SINE Alu -3 309 35 234 382 168 25 chr4 147174622 147175015 -55153332 + L2 LINE L2 2819 3267 -5 2652 227 58 18 chr4 147175236 147176057 -55152290 - MER97a DNA MER1_type? 0 894 41 2064 174 16 13 chr4 147176358 147176744 -55151603 - MLT1B LTR MaLR -3 387 1 1816 150 60 38 chr4 147176924 147177291 -55151056 + THE1C LTR MaLR 1 375 0 25 0 0 0 chr4 147179417 147179442 -55148905 + AT_rich Low_complexity Low_complexity 1 25 0 1445 183 36 6 chr4 147179454 147179874 -55148473 - MER21B LTR ERV1 -392 471 1 183 277 0 46 chr4 147179991 147180056 -55148291 - MIR SINE MIR -3 259 198 1217 135 0 0 chr4 147180378 147180571 -55147776 + L1MB7 LINE L1 5483 5675 -509 1850 165 58 62 chr4 147180571 147180809 -55147538 - MER31B LTR ERV1 -1 465 228 2754 119 26 7 chr4 147180809 147181229 -55147118 + MSTA LTR MaLR 1 428 0 1850 165 58 62 chr4 147181229 147181457 -55146890 - MER31B LTR ERV1 -238 228 1 2513 156 15 51 chr4 147181457 147181983 -55146364 + L1MB7 LINE L1 5671 6177 -7 311 297 47 16 chr4 147182902 147183030 -55145317 + L3b LINE CR1 1191 1322 -261 564 254 70 8 chr4 147183141 147183323 -55145024 - MLT1L LTR MaLR -95 520 243 3462 101 99 35 chr4 147184652 147185086 -55143261 + PABL_B LTR ERV1 2 490 -177 2849 119 9 0 chr4 147185086 147185516 -55142831 + MER57B LTR ERV1 1 434 0 3462 101 99 35 chr4 147185516 147185707 -55142640 + PABL_B LTR ERV1 490 667 0 2177 65 14 0 chr4 147186238 147186542 -55141805 - AluY SINE Alu 0 309 2 219 219 0 0 chr4 147187017 147187058 -55141289 + CT-rich Low_complexity Low_complexity 2 42 0 3181 161 26 0 chr4 147190044 147190584 -55137763 - MER41C LTR ERV1 0 554 1 509 248 7 46 chr4 147191358 147191511 -55136836 - L2 LINE L2 0 3313 3167 1403 276 46 10 chr4 147193435 147193959 -55134388 + MLT1G1 LTR MaLR 1 595 0 943 137 5 133 chr4 147195331 147195550 -55132797 - MLT1C LTR MaLR -8 459 192 909 169 45 0 chr4 147195655 147195832 -55132515 - MLT1C LTR MaLR -205 185 1 2284 102 3 3 chr4 147195970 147196283 -55132064 + AluSp SINE Alu 1 313 0 2458 153 57 7 chr4 147196364 147196770 -55131577 + MSTB LTR MaLR 1 426 0 24 0 0 0 chr4 147198458 147198482 -55129865 + AT_rich Low_complexity Low_complexity 1 24 0 437 281 8 8 chr4 147198869 147198990 -55129357 + LTR33 LTR ERVL 92 212 -309 213 172 60 129 chr4 147199384 147199500 -55128847 - L2 LINE L2 0 3313 3206 353 299 28 7 chr4 147199729 147199873 -55128474 + L2 LINE L2 2856 3002 -270 225 333 0 0 chr4 147200823 147200895 -55127452 + L2 LINE L2 3242 3313 0 234 91 0 0 chr4 147202399 147202432 -55125915 + (A)n Simple_repeat Simple_repeat 1 33 0 207 162 0 0 chr4 147202577 147202614 -55125733 + GA-rich Low_complexity Low_complexity 1 37 0 206 178 22 0 chr4 147203804 147203849 -55124498 + T-rich Low_complexity Low_complexity 3 48 0 301 272 201 12 chr4 147205055 147205224 -55123123 - MIR SINE MIR -11 251 51 208 235 12 53 chr4 147205758 147205841 -55122506 + MER5A DNA MER1_type 95 175 -4 834 216 67 5 chr4 147207611 147207805 -55120542 - MER3 DNA MER1_type -3 206 1 2064 109 33 0 chr4 147208516 147208832 -55119515 + AluSg SINE Alu 1 325 0 469 227 25 8 chr4 147209032 147209151 -55119196 - L2 LINE L2 0 3272 3152 923 96 28 22 chr4 147210723 147210901 -55117446 + GA-rich Low_complexity Low_complexity 2 180 0 2592 188 50 4 chr4 147212295 147212778 -55115569 + MLT1D LTR MaLR 1 505 0 21 57 0 0 chr4 147212962 147212997 -55115350 + AT_rich Low_complexity Low_complexity 1 35 0 212 226 38 0 chr4 147215248 147215301 -55113046 + L2 LINE L2 3026 3080 -233 449 277 71 43 chr4 147215468 147215652 -55112695 - MIR SINE MIR -67 195 7 2319 226 95 17 chr4 147217245 147217769 -55110578 + L1M4c LINE L1 1429 1911 -4652 2123 132 0 3 chr4 147217769 147218073 -55110274 - AluSg SINE Alu -7 303 1 2319 226 95 17 chr4 147218073 147218309 -55110038 + L1M4c LINE L1 1911 2396 -4167 1903 121 44 41 chr4 147218309 147218624 -55109723 + LTR8 LTR ERV1 1 316 -375 5951 83 44 4 chr4 147218631 147219381 -55108966 - LTR17 LTR ERV1 0 780 1 37746 57 3 1 chr4 147219383 147223907 -55104440 - HERV17 LTR ERV1 -2 8624 4091 1076 56 0 21 chr4 147223902 147224044 -55104303 - LTR17 LTR ERV1 -641 139 1 * 2285 158 21 18 chr4 147224061 147224442 -55103905 + LTR8 LTR ERV1 310 691 0 739 178 39 29 chr4 147224442 147224622 -55103725 + L1M4c LINE L1 2364 2534 -3848 25 51 0 0 chr4 147225919 147225958 -55102389 + AT_rich Low_complexity Low_complexity 1 39 0 192 245 143 61 chr4 147227737 147227835 -55100512 - L2 LINE L2 -558 2756 2651 233 276 110 31 chr4 147228084 147228247 -55100100 - MIR SINE MIR 0 262 87 194 91 30 0 chr4 147228316 147228349 -55099998 + CT-rich Low_complexity Low_complexity 3 36 0 208 311 33 0 chr4 147228875 147228936 -55099411 - L3 LINE CR1 -457 1120 1058 675 319 193 25 chr4 147229083 147230171 -55098176 + L2 LINE L2 1733 3000 -272 272 182 15 61 chr4 147230305 147230371 -55097976 + L2 LINE L2 3210 3272 0 310 371 71 16 chr4 147230723 147230976 -55097371 - L3 LINE CR1 -778 799 533 257 254 17 0 chr4 147233055 147233114 -55095233 + MIR3 SINE MIR 144 203 -5 1120 251 79 55 chr4 147234881 147235388 -55092959 - MER113 DNA MER1_type? 0 521 3 786 189 32 68 chr4 147235444 147235634 -55092713 - MER20 DNA MER1_type -35 184 2 202 333 83 10 chr4 147236968 147237064 -55091283 - L2 LINE L2 -1 3312 3210 411 281 30 44 chr4 147237502 147237637 -55090710 - AluJb SINE Alu -1 311 179 3094 8 0 11 chr4 147237747 147238105 -55090242 + L1HS LINE L1 5802 6155 0 258 32 0 0 chr4 147238105 147238136 -55090211 + (A)n Simple_repeat Simple_repeat 1 31 0 6573 72 6 0 chr4 147238136 147239045 -55089302 + L1PA8A LINE L1 5191 6104 -27 1579 188 89 25 chr4 147239046 147239530 -55088817 + pTR5 LTR ERV1 743 1257 -1181 1594 75 41 75 chr4 147239533 147239801 -55088546 + LTR12 LTR ERV1 456 714 0 23 0 0 0 chr4 147239803 147239826 -55088521 + AT_rich Low_complexity Low_complexity 1 23 0 390 291 68 8 chr4 147240405 147240522 -55087825 + MIR SINE MIR 34 157 -105 335 176 27 14 chr4 147240522 147240596 -55087751 + HsTC2 DNA Tc2 2 76 -1822 272 227 15 0 chr4 147240819 147240885 -55087462 + HsTC2 DNA Tc2 1826 1892 -6 334 269 11 0 chr4 147240885 147240978 -55087369 + MIR SINE MIR 159 252 -10 459 243 48 0 chr4 147241800 147241903 -55086444 + MER91C DNA MER1_type 33 140 0 186 133 0 0 chr4 147242010 147242040 -55086307 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 701 244 63 14 chr4 147243173 147243394 -55084953 + L1MC4 LINE L1 6451 6682 -1360 235 155 0 35 chr4 147243431 147243489 -55084858 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 228 318 0 0 chr4 147243512 147243575 -55084772 + L1MC4 LINE L1 6747 6809 -1233 21 0 0 0 chr4 147243575 147243596 -55084751 + AT_rich Low_complexity Low_complexity 1 21 0 1546 202 68 9 chr4 147243643 147243979 -55084368 + L1MC4 LINE L1 7464 7819 -223 655 277 25 66 chr4 147243988 147244306 -55084041 + L1MC4 LINE L1 7738 8042 0 593 284 28 0 chr4 147244528 147244669 -55083678 - MIR3 SINE MIR -50 158 14 1725 164 76 6 chr4 147245819 147246149 -55082198 + MER47A DNA MER2_type 13 365 -1 225 0 0 0 chr4 147248433 147248458 -55079889 + (A)n Simple_repeat Simple_repeat 1 25 0 261 329 93 21 chr4 147248859 147249096 -55079251 + L1MEd LINE L1 506 759 -5360 525 286 67 43 chr4 147249391 147249492 -55078855 + MIR SINE MIR 2 99 -163 2125 95 7 14 chr4 147249492 147249788 -55078559 - AluSg SINE Alu -16 294 1 525 286 67 43 chr4 147249788 147249941 -55078406 + MIR SINE MIR 99 262 0 436 332 79 20 chr4 147249948 147250150 -55078197 - MIR SINE MIR -48 214 1 481 284 157 66 chr4 147250254 147250387 -55077960 - L2 LINE L2 0 3313 3193 234 0 0 0 chr4 147250387 147250413 -55077934 + (TG)n Simple_repeat Simple_repeat 2 27 0 481 284 157 66 chr4 147250413 147251001 -55077346 - L2 LINE L2 -120 3193 2494 276 279 62 39 chr4 147251219 147251348 -55076999 + L2 LINE L2 3182 3313 0 2142 90 29 0 chr4 147252692 147252990 -55075357 - AluSc SINE Alu 0 309 1 325 103 29 0 chr4 147253374 147253442 -55074905 + (TA)n Simple_repeat Simple_repeat 1 70 0 366 88 44 0 chr4 147253820 147253888 -55074459 + (CA)n Simple_repeat Simple_repeat 2 72 0 30 27 0 0 chr4 147254119 147254156 -55074191 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 147254207 147254228 -55074119 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr4 147254293 147254336 -55074011 + AT_rich Low_complexity Low_complexity 1 43 0 494 286 43 7 chr4 147254679 147254819 -55073528 + MIR SINE MIR 10 154 -108 3965 126 37 16 chr4 147255000 147255681 -55072666 - Tigger3b DNA MER2_type 0 1232 538 7654 22 5 0 chr4 147255681 147256968 -55071379 + L1PA4 LINE L1 4861 6152 -3 2799 41 0 0 chr4 147256974 147257314 -55071033 + L1PA4 LINE L1 5814 6153 -2 1704 115 71 0 chr4 147257774 147258043 -55070304 - Tigger3b DNA MER2_type -686 545 258 1185 170 70 9 chr4 147258152 147258382 -55069965 - Tigger3b DNA MER2_type -987 244 1 291 298 48 39 chr4 147258383 147258487 -55069860 - MIR SINE MIR -138 124 20 678 291 19 5 chr4 147258575 147258781 -55069566 + MIR SINE MIR 20 228 -34 29 0 0 0 chr4 147258907 147258936 -55069411 + AT_rich Low_complexity Low_complexity 1 29 0 1726 33 5 5 chr4 147258936 147259149 -55069198 - L1PA3 LINE L1 -3 6152 5940 1366 170 116 7 chr4 147260116 147260392 -55067955 - AluJo SINE Alu -5 307 2 21 36 0 0 chr4 147261465 147261493 -55066854 + AT_rich Low_complexity Low_complexity 1 28 0 3069 215 16 10 chr4 147262337 147263429 -55064918 + L1 LINE L1 1267 2413 -4152 3780 84 20 2 chr4 147263437 147263948 -55064399 - THE1B-int LTR MaLR -1060 520 1 2309 99 79 15 chr4 147263948 147264290 -55064057 - THE1B LTR MaLR 0 364 1 2515 233 29 29 chr4 147264291 147265073 -55063274 + L1 LINE L1 2631 3412 -4153 1519 205 18 12 chr4 147265071 147265402 -55062945 + L1 LINE L1 5317 5649 -1916 * 5602 158 25 47 chr4 147265436 147266055 -55062292 - L1MA4 LINE L1 -11 6289 5658 241 65 0 0 chr4 147266055 147266086 -55062261 - U2 snRNA snRNA -157 31 1 5602 158 25 47 chr4 147266086 147266720 -55061627 - L1MA4 LINE L1 -642 5658 5011 2114 143 10 0 chr4 147266720 147267028 -55061319 - AluSx SINE Alu -1 311 1 5602 158 25 47 chr4 147267028 147267960 -55060387 - L1MA4 LINE L1 -1289 5011 4116 3303 87 2 13 chr4 147268176 147268625 -55059722 + MLT2A1 LTR ERVL 1 444 0 476 196 208 75 chr4 147268668 147268841 -55059506 - MER63A DNA MER1_type 0 210 15 444 234 48 40 chr4 147268907 147269031 -55059316 - L2 LINE L2 -3 3310 3186 485 319 121 30 chr4 147269127 147269880 -55058467 - L1MA4 LINE L1 -2369 3777 2957 298 270 59 50 chr4 147269946 147270307 -55058040 - L1M4 LINE L1 -3644 3921 3557 327 283 82 26 chr4 147271001 147271218 -55057129 - HAL1b LINE L1 -923 425 223 724 275 140 38 chr4 147271604 147271946 -55056401 - L2 LINE L2 0 3313 2937 677 257 7 0 chr4 147272106 147272250 -55056097 - L2 LINE L2 -658 2656 2512 1002 183 6 0 chr4 147272259 147272428 -55055919 + MER45A DNA AcHobo 1 170 -8 3377 265 198 21 chr4 147272445 147274049 -55054298 - L2 LINE L2 -8 3305 1385 492 252 0 9 chr4 147274053 147274164 -55054183 - L2 LINE L2 -792 2522 2413 3546 214 36 6 chr4 147274168 147275028 -55053319 - MER63C DNA MER1_type 0 930 4 203 179 26 0 chr4 147275547 147275586 -55052761 + L3 LINE CR1 1517 1556 -21 216 0 0 0 chr4 147275843 147275867 -55052480 + (CG)n Simple_repeat Simple_repeat 2 25 0 189 0 0 0 chr4 147275868 147275889 -55052458 + (TG)n Simple_repeat Simple_repeat 2 22 0 4033 192 44 13 chr4 147275900 147276799 -55051548 - L1MD2 LINE L1 -226 6133 5213 25 0 0 0 chr4 147277555 147277580 -55050767 + AT_rich Low_complexity Low_complexity 1 25 0 289 308 58 87 chr4 147280280 147280556 -55047791 - L2 LINE L2 -17 3255 2988 1383 228 101 52 chr4 147280583 147281048 -55047299 - MLT1D LTR MaLR -17 488 1 211 275 0 14 chr4 147281767 147281836 -55046511 + GA-rich Low_complexity Low_complexity 1 68 0 308 282 13 13 chr4 147281853 147281931 -55046416 - L2 LINE L2 -9 3304 3227 208 193 123 18 chr4 147282126 147282183 -55046164 + MIR3 SINE MIR 144 206 -2 297 245 31 20 chr4 147282413 147282511 -55045836 - MIR3 SINE MIR -22 186 88 186 133 0 0 chr4 147283572 147283602 -55044745 + (A)n Simple_repeat Simple_repeat 1 30 0 204 40 0 0 chr4 147284423 147284448 -55043899 + (TG)n Simple_repeat Simple_repeat 2 26 0 632 289 6 6 chr4 147284617 147284783 -55043564 + MLT2E LTR ERVL 160 325 -303 782 271 42 5 chr4 147284821 147285013 -55043334 + MLT2E LTR ERVL 430 628 0 220 151 19 19 chr4 147285017 147285070 -55043277 + (CATA)n Simple_repeat Simple_repeat 3 55 0 246 292 56 42 chr4 147285153 147285225 -55043122 + L2 LINE L2 3200 3272 0 2519 146 2 13 chr4 147285485 147285882 -55042465 + Tigger1 DNA MER2_type 2 394 -2024 4144 174 42 2 chr4 147285982 147286889 -55041458 - L1MA9 LINE L1 -257 6055 5113 3160 198 13 7 chr4 147286900 147287578 -55040769 + L1 LINE L1 4223 4904 -1242 699 169 24 0 chr4 147287827 147287951 -55040396 + LTR47A LTR ERVL 326 452 0 1033 201 18 22 chr4 147287951 147288175 -55040172 + L1 LINE L1 4900 5122 -1024 269 270 0 0 chr4 147288643 147288706 -55039641 + Charlie8 DNA MER1_type 94 156 -2261 566 268 14 7 chr4 147289356 147289498 -55038849 + LTR33 LTR ERVL 1 143 -378 354 250 67 72 chr4 147289625 147289805 -55038542 + LTR33 LTR ERVL 343 521 0 2822 12 0 12 chr4 147290084 147290403 -55037944 + AluYb8 SINE Alu 1 315 -3 1378 168 46 46 chr4 147291115 147291418 -55036929 + AluJb SINE Alu 1 303 -9 427 224 88 16 chr4 147292517 147292642 -55035705 + L1ME LINE L1 5592 5725 -445 426 221 28 17 chr4 147292667 147292787 -55035560 - MER110A LTR ERV1 -4 464 346 261 320 19 19 chr4 147292857 147292960 -55035387 - MLT2B2 LTR ERVL -151 364 262 579 232 37 62 chr4 147292961 147293202 -55035145 - MER110A LTR ERV1 -139 329 95 409 220 80 30 chr4 147293243 147293343 -55035004 + MER58A DNA MER1_type 1 105 -2 202 139 56 0 chr4 147345376 147345412 -54982935 + MIR SINE MIR 106 143 -119 2597 186 94 8 chr4 147346602 147347101 -54981246 - MLT1F LTR MaLR 0 542 1 378 233 10 10 chr4 147347405 147347508 -54980839 - MER103 DNA DNA -55 111 9 389 280 22 82 chr4 147347987 147348219 -54980128 + HAL1 LINE L1 2181 2398 -109 2194 109 0 0 chr4 147348313 147348607 -54979740 - AluSx SINE Alu -14 298 5 225 171 0 0 chr4 147348785 147348826 -54979521 - MLT1G LTR MaLR -9 581 541 686 200 0 0 chr4 147348826 147348951 -54979396 + MLT2B3 LTR ERVL 1 125 -429 1280 213 21 89 chr4 147349040 147349420 -54978927 + MLT2B3 LTR ERVL 152 505 -49 463 52 0 0 chr4 147349420 147349478 -54978869 - L1PA7 LINE L1 -1 6153 6096 446 237 89 81 chr4 147350003 147350239 -54978108 + MIR SINE MIR 12 249 -13 1810 182 0 7 chr4 147350244 147350551 -54977796 - AluJo SINE Alu -7 305 1 220 288 190 65 chr4 147350612 147350796 -54977551 + MIR3 SINE MIR 2 208 0 211 211 19 0 chr4 147352625 147352677 -54975670 + (TG)n Simple_repeat Simple_repeat 2 54 0 435 52 0 0 chr4 147352695 147352753 -54975594 + (CA)n Simple_repeat Simple_repeat 1 58 0 1158 154 29 14 chr4 147353123 147353404 -54974943 - L1PA16 LINE L1 0 6166 5853 504 267 130 6 chr4 147353415 147353576 -54974771 - MIR SINE MIR -74 188 8 1066 81 0 0 chr4 147354463 147354599 -54973748 + AluY SINE Alu 161 296 -15 334 209 17 17 chr4 147355805 147355920 -54972427 - L1MA4A LINE L1 -1 6302 6188 2621 122 47 19 chr4 147355920 147356148 -54972199 - L1PB4 LINE L1 -99 6057 5830 468 277 73 18 chr4 147356148 147356422 -54971925 - L1MD3 LINE L1 -2169 5826 5538 278 237 62 10 chr4 147356845 147356942 -54971405 + MIR3 SINE MIR 96 197 -11 377 238 60 0 chr4 147358596 147358680 -54969667 - L2 LINE L2 -1 3271 3183 1336 19 0 0 chr4 147360615 147360770 -54967577 + L1PA4 LINE L1 5999 6153 -2 236 285 85 15 chr4 147360835 147361004 -54967343 - L1M2 LINE L1 -644 5524 5391 1808 110 4 4 chr4 147361005 147361251 -54967096 - AluSx SINE Alu -13 299 54 2319 126 6 0 chr4 147362410 147362766 -54965581 - L1PA16 LINE L1 -9 6157 5800 21 36 0 0 chr4 147363254 147363282 -54965065 + AT_rich Low_complexity Low_complexity 1 28 0 377 167 22 11 chr4 147363628 147363718 -54964629 - L3b LINE CR1 -166 1417 1327 1294 109 105 13 chr4 147364091 147364320 -54964027 + MSTA LTR MaLR 179 428 0 3531 104 6 11 chr4 147364359 147364899 -54963448 - L1PA16 LINE L1 -104 6062 5526 * 4323 206 4 7 chr4 147364897 147365864 -54962483 - L1M2 LINE L1 -1064 5082 4119 335 290 38 0 chr4 147366076 147366207 -54962140 - L1MD3 LINE L1 -905 5241 5106 22 0 0 0 chr4 147367053 147367075 -54961272 + AT_rich Low_complexity Low_complexity 1 22 0 1614 196 43 27 chr4 147367172 147367242 -54961105 - L1MB8 LINE L1 -5 6173 6106 1579 166 83 47 chr4 147367242 147367603 -54960744 - MLT1A2 LTR MaLR 0 374 1 1614 196 43 27 chr4 147367603 147367970 -54960377 - L1MB8 LINE L1 -72 6106 5729 549 70 0 174 chr4 147368307 147368422 -54959925 - AluSg1 SINE Alu -214 95 1 258 313 31 31 chr4 147368441 147368537 -54959810 - MIR3 SINE MIR -28 180 85 341 327 219 23 chr4 147368541 147368801 -54959546 + L2 LINE L2 2961 3271 -1 834 229 116 53 chr4 147369218 147369420 -54958927 - L2 LINE L2 -1 3312 3081 386 38 0 19 chr4 147369420 147369473 -54958874 + (TG)n Simple_repeat Simple_repeat 1 52 0 834 229 116 53 chr4 147369473 147369589 -54958758 - L2 LINE L2 -232 3081 2974 213 368 47 28 chr4 147369876 147369982 -54958365 + L3b LINE CR1 1417 1524 -59 230 262 48 12 chr4 147371112 147371196 -54957151 + MIR SINE MIR 94 180 -82 19735 100 3 2 chr4 147371493 147374497 -54953850 - L1P LINE L1 -1763 4383 1378 188 343 15 0 chr4 147375275 147375342 -54953005 + L2 LINE L2 3205 3272 0 376 199 111 78 chr4 147375728 147375880 -54952467 - MIR SINE MIR -58 150 18 246 261 0 43 chr4 147376031 147376100 -54952247 - MIR SINE MIR -119 143 78 1259 192 44 41 chr4 147376826 147376846 -54951501 - MLT1A1 LTR MaLR 0 365 347 2235 119 19 26 chr4 147376846 147377224 -54951123 + THE1C LTR MaLR 1 375 0 1259 192 44 41 chr4 147377224 147377567 -54950780 - MLT1A1 LTR MaLR -18 347 1 303 218 0 0 chr4 147378035 147378090 -54950257 - Tigger5 DNA MER2_type -2268 55 1 783 182 60 122 chr4 147378092 147378411 -54949936 + MLT1A1 LTR MaLR 67 365 0 2110 106 7 7 chr4 147381433 147381716 -54946631 + AluSx SINE Alu 1 283 -29 311 236 68 110 chr4 147382640 147382717 -54945630 + MLT1L LTR MaLR 205 284 -331 2012 100 0 0 chr4 147382717 147382977 -54945370 + AluSg SINE Alu 37 296 -14 311 236 68 110 chr4 147382977 147383191 -54945156 + MLT1L LTR MaLR 284 484 -131 2343 168 63 31 chr4 147384674 147385163 -54943184 + MLT1D LTR MaLR 1 505 0 2291 77 3 3 chr4 147385563 147385881 -54942466 + AluSq SINE Alu 1 318 0 520 343 136 25 chr4 147386866 147387717 -54940630 + L2 LINE L2 2097 3058 -214 514 316 48 5 chr4 147387783 147387970 -54940377 - MIR SINE MIR -11 251 57 368 265 71 0 chr4 147388038 147388136 -54940211 + L2 LINE L2 3208 3312 -1 192 368 147 0 chr4 147388190 147388353 -54939994 - MIR SINE MIR -74 188 2 340 328 51 104 chr4 147388434 147388973 -54939374 + L2 LINE L2 2776 3272 0 183 80 0 0 chr4 147389784 147389809 -54938538 + (CAT)n Simple_repeat Simple_repeat 3 27 0 367 268 9 0 chr4 147395938 147396050 -54932297 - MER103 DNA DNA -53 113 1 354 290 9 9 chr4 147396313 147396420 -54931927 + L2 LINE L2 3164 3270 -2 231 36 0 0 chr4 147396543 147396571 -54931776 + (TG)n Simple_repeat Simple_repeat 2 29 0 395 253 164 140 chr4 147397274 147397498 -54930849 + L2 LINE L2 2890 3128 -144 1565 208 37 0 chr4 147397498 147397825 -54930522 - MER58B DNA MER1_type 0 341 3 395 253 164 140 chr4 147397825 147397971 -54930376 + L2 LINE L2 3128 3269 -3 272 254 0 15 chr4 147397987 147398054 -54930293 - MIR SINE MIR -19 243 178 542 313 42 19 chr4 147398097 147398311 -54930036 - MIR SINE MIR -38 224 6 325 351 15 0 chr4 147398426 147398560 -54929787 + MIR3 SINE MIR 68 203 -5 1005 201 130 53 chr4 147399784 147400122 -54928225 + MLT1A1 LTR MaLR 1 364 -1 2610 26 0 7 chr4 147400318 147400620 -54927727 - AluY SINE Alu -11 300 1 246 128 0 0 chr4 147400635 147400674 -54927673 + (A)n Simple_repeat Simple_repeat 1 39 0 420 37 0 0 chr4 147400924 147400978 -54927369 + (CA)n Simple_repeat Simple_repeat 2 55 0 261 323 59 41 chr4 147401416 147401636 -54926711 + L3 LINE CR1 1101 1324 -253 1870 133 0 60 chr4 147401970 147402286 -54926061 + AluSx SINE Alu 1 297 -15 551 296 159 5 chr4 147402360 147402580 -54925767 + MIR SINE MIR 5 258 -4 1013 234 128 55 chr4 147402672 147402969 -54925378 - MLT1D LTR MaLR -2 503 158 1512 207 7 16 chr4 147402969 147403273 -54925074 + AluSx SINE Alu 1 301 -11 1013 234 128 55 chr4 147403273 147403444 -54924903 - MLT1D LTR MaLR -347 158 1 24 0 0 0 chr4 147403902 147403926 -54924421 + AT_rich Low_complexity Low_complexity 1 24 0 2139 127 0 0 chr4 147403926 147404218 -54924129 - AluSx SINE Alu -20 292 1 279 284 0 57 chr4 147404912 147405000 -54923347 - L2 LINE L2 -3 3269 3187 2909 102 69 0 chr4 147405236 147405668 -54922679 - L1MA8 LINE L1 -8 6283 5822 230 329 14 0 chr4 147405944 147406017 -54922330 + MIR SINE MIR 42 115 -93 222 227 0 0 chr4 147406257 147406301 -54922046 + CT-rich Low_complexity Low_complexity 4 47 0 1257 183 77 128 chr4 147406314 147406679 -54921668 - L1MC4 LINE L1 -2 8040 7705 1975 152 3 0 chr4 147406679 147406981 -54921366 + AluSx SINE Alu 1 303 -9 1257 183 77 128 chr4 147406981 147407106 -54921241 - L1MC4 LINE L1 -337 7705 7575 274 218 102 91 chr4 147407234 147407509 -54920838 - L1ME4a LINE L1 -1 6120 5843 270 0 0 0 chr4 147407980 147408010 -54920337 + (TA)n Simple_repeat Simple_repeat 1 30 0 2615 40 0 0 chr4 147408045 147408345 -54920002 - AluY SINE Alu -11 300 1 322 322 72 33 chr4 147409738 147409918 -54918429 - MIR SINE MIR -29 233 47 208 299 103 21 chr4 147410250 147410347 -54918000 + L2 LINE L2 3167 3271 -1 10550 60 12 15 chr4 147411093 147412475 -54915872 + SVA Other Other 3 1379 -7 205 132 26 0 chr4 147415474 147415512 -54912835 - L2 LINE L2 -1 3312 3274 751 288 22 18 chr4 147415529 147415751 -54912596 + MIR SINE MIR 4 226 -36 304 312 56 0 chr4 147416120 147416245 -54912102 - MIR SINE MIR -49 213 82 877 235 120 50 chr4 147416251 147416609 -54911738 - MLT1J2 LTR MaLR -10 440 58 252 313 0 0 chr4 147416632 147416712 -54911635 - MIR SINE MIR -177 85 6 642 318 15 10 chr4 147417552 147417751 -54910596 + MLT1I LTR MaLR 8 207 -202 802 245 96 66 chr4 147417751 147418190 -54910157 + MLT1H LTR MaLR 3 545 -4 602 226 11 88 chr4 147418226 147418329 -54910018 + MLT1I LTR MaLR 243 328 -81 1645 110 135 39 chr4 147418329 147418610 -54909737 + AluSg SINE Alu 1 308 -2 602 226 11 88 chr4 147418610 147418687 -54909660 + MLT1I LTR MaLR 328 409 0 277 299 24 31 chr4 147418891 147419018 -54909329 + MLT1I LTR MaLR 264 389 -20 291 175 0 0 chr4 147420454 147420511 -54907836 + A-rich Low_complexity Low_complexity 1 57 0 239 302 77 41 chr4 147421050 147421219 -54907128 + L2 LINE L2 2805 2979 -293 714 162 28 42 chr4 147421425 147421567 -54906780 - MLT1F LTR MaLR 0 542 403 331 251 57 34 chr4 147421918 147422093 -54906254 + L1MC4 LINE L1 7864 8042 0 377 238 0 0 chr4 147422191 147422275 -54906072 - MLT1J2 LTR MaLR -13 437 354 502 284 47 6 chr4 147422377 147422546 -54905801 - MLT1J2 LTR MaLR -272 178 3 22 0 0 0 chr4 147423639 147423661 -54904686 + AT_rich Low_complexity Low_complexity 1 22 0 2561 50 0 3 chr4 147423663 147423962 -54904385 + AluY SINE Alu 1 298 -13 697 112 231 15 chr4 147423986 147424120 -54904227 + THE1C LTR MaLR 1 163 -212 512 47 0 0 chr4 147424122 147424186 -54904161 + (GTTTG)n Simple_repeat Simple_repeat 5 68 0 316 310 185 8 chr4 147425019 147425185 -54903162 + MIR SINE MIR 1 189 -73 662 82 10 0 chr4 147425321 147425419 -54902928 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 1140 175 18 22 chr4 147425499 147425722 -54902625 + L1MB3 LINE L1 5955 6176 -7 650 311 28 22 chr4 147425746 147425926 -54902421 + MER91A DNA MER1_type 3 183 -13 187 346 79 0 chr4 147425941 147426042 -54902305 - MIR SINE MIR -65 197 89 793 258 66 16 chr4 147427178 147427422 -54900925 - MIR SINE MIR 0 262 7 924 219 41 74 chr4 147428393 147428578 -54899769 - MLT1H1 LTR MaLR -284 271 141 1513 152 155 17 chr4 147428578 147428874 -54899473 - MER1B DNA MER1_type 0 337 1 924 219 41 74 chr4 147428874 147429008 -54899339 - MLT1H1 LTR MaLR -414 141 4 1137 139 0 17 chr4 147429326 147429498 -54898849 + AluJo SINE Alu 122 290 -22 3085 136 12 57 chr4 147429986 147430163 -54898184 - L1MB3 LINE L1 -2 6181 5998 2236 109 0 3 chr4 147430163 147430466 -54897881 - AluSg1 SINE Alu -7 302 1 3085 136 12 57 chr4 147430466 147430871 -54897476 - L1MB3 LINE L1 -185 5998 5625 249 283 195 0 chr4 147431096 147431209 -54897138 + L2 LINE L2 3178 3312 -1 460 293 133 26 chr4 147431770 147432040 -54896307 + L2 LINE L2 3009 3307 -6 1788 185 0 3 chr4 147432040 147432343 -54896004 + AluJb SINE Alu 1 302 -10 1559 197 91 11 chr4 147432552 147432927 -54895420 - Charlie1b DNA MER1_type -118 405 1 385 272 50 90 chr4 147433330 147433631 -54894716 + HAL1 LINE L1 629 917 -1590 1560 256 82 26 chr4 147433677 147434375 -54893972 + HAL1 LINE L1 1032 1768 -739 1239 261 154 13 chr4 147434375 147434850 -54893497 + MLT1F LTR MaLR 1 542 0 337 300 43 71 chr4 147434888 147435028 -54893319 + HAL1 LINE L1 1810 1945 -562 303 298 105 0 chr4 147438071 147438195 -54890152 - L3 LINE CR1 -906 671 535 * 1035 266 104 18 chr4 147438186 147438581 -54889766 + L3 LINE CR1 637 1065 -512 266 207 54 108 chr4 147438643 147438754 -54889593 + MIR SINE MIR 112 216 -46 779 268 59 63 chr4 147438775 147439284 -54889063 + MLT1K LTR MaLR 3 578 -10 700 161 70 11 chr4 147439950 147440113 -54888234 - MER33 DNA MER1_type -2355 230 53 5681 54 14 0 chr4 147440113 147440778 -54887569 - L1PA6 LINE L1 -4 6150 5477 700 161 70 11 chr4 147440778 147440800 -54887547 - MER33 DNA MER1_type -2532 53 34 * 995 170 23 12 chr4 147440789 147440960 -54887387 + MER58B DNA MER1_type 168 340 -1 186 260 20 0 chr4 147440961 147441011 -54887336 - MIR3 SINE MIR -48 160 110 360 291 55 8 chr4 147441336 147441463 -54886884 + MIR SINE MIR 129 261 -1 1359 141 5 33 chr4 147442257 147442470 -54885877 - AluJo SINE Alu -20 292 86 336 159 11 34 chr4 147444586 147444674 -54883673 + GA-rich Low_complexity Low_complexity 1 86 0 207 0 0 0 chr4 147444823 147444846 -54883501 + (TCTCCC)n Simple_repeat Simple_repeat 1 23 0 5555 85 24 36 chr4 147444854 147446352 -54881995 + SVA Other Other 48 1082 -304 205 271 129 12 chr4 147446985 147447070 -54881277 + MIR SINE MIR 39 133 -75 293 268 142 39 chr4 147447132 147447386 -54880961 + L2 LINE L2 1814 2093 -1221 1308 297 51 24 chr4 147448748 147449431 -54878916 + L2 LINE L2 2541 3204 -109 1444 268 138 21 chr4 147449431 147449961 -54878386 + MLT1G1 LTR MaLR 4 595 0 1308 297 51 24 chr4 147449961 147450003 -54878344 + L2 LINE L2 3204 3243 -70 2978 136 19 2 chr4 147450003 147450422 -54877925 - MSTB LTR MaLR 0 426 1 1308 297 51 24 chr4 147450422 147450451 -54877896 + L2 LINE L2 3243 3305 -8 219 69 0 0 chr4 147450927 147450956 -54877391 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 269 293 95 0 chr4 147451857 147451961 -54876386 + MLT1G1 LTR MaLR 438 552 -43 307 172 62 0 chr4 147451961 147452025 -54876322 - MLT2A2 LTR ERVL 0 453 386 12351 89 5 49 chr4 147452033 147452432 -54875915 + L1P3 LINE L1 11 426 -6035 246 32 0 0 chr4 147452432 147452463 -54875884 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 408 71 36 0 chr4 147452468 147452524 -54875823 - AluSp/q SINE Alu -31 282 225 12351 89 5 49 chr4 147452524 147453879 -54874468 + L1P3 LINE L1 430 1727 -4734 6686 147 27 5 chr4 147453980 147456109 -54872238 - L1MA5A LINE L1 -101 6196 4019 367 258 50 104 chr4 147456116 147456298 -54872049 - MIR SINE MIR -87 175 4 261 232 8 28 chr4 147456455 147456536 -54871811 - MER5A DNA MER1_type -6 172 94 262 331 52 19 chr4 147456756 147456910 -54871437 + MER5A DNA MER1_type 16 174 -15 419 287 105 29 chr4 147457997 147458206 -54870141 + MIR SINE MIR 35 259 -3 189 107 0 0 chr4 147459802 147459830 -54868517 + (T)n Simple_repeat Simple_repeat 1 28 0 298 294 49 0 chr4 147461124 147461226 -54867121 - L2 LINE L2 -30 3242 3136 741 243 55 41 chr4 147461428 147461484 -54866863 - L1ME4a LINE L1 -209 5912 5858 1968 128 3 7 chr4 147461484 147461766 -54866581 - AluSx SINE Alu -18 294 14 741 243 55 41 chr4 147461766 147462071 -54866276 - L1ME4a LINE L1 -263 5858 5546 258 56 0 0 chr4 147462277 147462313 -54866034 + (T)n Simple_repeat Simple_repeat 1 36 0 1259 214 58 47 chr4 147462486 147462845 -54865502 + MLT1A1 LTR MaLR 1 363 -2 1017 74 153 6 chr4 147462846 147463022 -54865325 + PABL_A LTR ERV1 1 202 -458 308 268 16 71 chr4 147463384 147463511 -54864836 - L1ME4a LINE L1 -690 5431 5312 601 170 49 139 chr4 147463989 147464212 -54864135 + MER20 DNA MER1_type 1 203 -16 2507 60 0 0 chr4 147466442 147466761 -54861586 + PABL_A LTR ERV1 340 658 -2 881 121 6 60 chr4 147468323 147468489 -54859858 - THE1C LTR MaLR -218 157 1 201 74 0 0 chr4 147468779 147468806 -54859541 + (GA)n Simple_repeat Simple_repeat 2 28 0 678 347 60 31 chr4 147469069 147469679 -54858668 - L2 LINE L2 -163 3109 2471 219 313 116 9 chr4 147472011 147472123 -54856224 - MIR SINE MIR -11 251 128 479 238 62 12 chr4 147473892 147474052 -54854295 - MER21B LTR ERV1 -61 802 635 481 331 17 12 chr4 147474565 147474737 -54853610 + MIR SINE MIR 23 195 -67 2228 115 0 13 chr4 147474762 147475075 -54853272 - AluSg SINE Alu -1 309 1 590 245 52 36 chr4 147475165 147475357 -54852990 - L2 LINE L2 -2 3311 3117 278 401 0 7 chr4 147475412 147475549 -54852798 - L2 LINE L2 -353 2960 2825 858 164 10 63 chr4 147475555 147475762 -54852585 + MLT1D LTR MaLR 5 200 -305 581 300 68 52 chr4 147477891 147478274 -54850073 - LTR33 LTR ERVL 0 521 133 397 307 39 33 chr4 147478625 147478778 -54849569 - MIR3 SINE MIR -52 156 3 871 153 0 0 chr4 147478887 147479011 -54849336 + AluJb SINE Alu 1 124 -188 198 167 0 0 chr4 147479019 147479055 -54849292 + (TA)n Simple_repeat Simple_repeat 1 36 0 202 227 0 0 chr4 147479091 147479135 -54849212 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 603 224 125 9 chr4 147483095 147483327 -54845020 - L1ME LINE L1 -307 5814 5556 849 133 0 8 chr4 147483438 147483558 -54844789 - FLAM_C SINE Alu -24 119 1 1323 261 103 75 chr4 147483582 147484620 -54843727 + L2 LINE L2 2175 3313 0 337 301 52 37 chr4 147484883 147485019 -54843328 + L1M LINE L1 5265 5402 -719 2022 138 75 27 chr4 147485786 147486162 -54842185 - MSTA LTR MaLR -34 394 1 1854 174 22 16 chr4 147486724 147486913 -54841434 - MLT1A1 LTR MaLR 0 365 172 3048 79 67 2 chr4 147486913 147487293 -54841054 + MLT2A1 LTR ERVL 1 412 -32 413 66 16 0 chr4 147487293 147487354 -54840993 + (TA)n Simple_repeat Simple_repeat 2 63 0 3048 79 67 2 chr4 147487354 147487390 -54840957 + MLT2A1 LTR ERVL 412 444 0 1854 174 22 16 chr4 147487390 147487563 -54840784 - MLT1A1 LTR MaLR -193 172 1 570 279 60 22 chr4 147487782 147487965 -54840382 + MIR SINE MIR 10 199 -63 522 293 60 20 chr4 147488458 147488608 -54839739 - L2 LINE L2 -1 3271 3116 290 318 30 0 chr4 147488838 147488904 -54839443 - L2 LINE L2 -50 3222 3155 276 30 0 0 chr4 147488907 147488940 -54839407 + (TG)n Simple_repeat Simple_repeat 2 34 0 1684 153 7 0 chr4 147489410 147489692 -54838655 - L1PA16 LINE L1 -9 6157 5874 234 295 116 9 chr4 147489933 147490045 -54838302 + MIR SINE MIR 10 133 -129 1989 126 14 10 chr4 147590229 147590523 -54737824 + AluSx SINE Alu 1 295 -17 360 277 142 45 chr4 147590729 147590884 -54737463 + MIR3 SINE MIR 32 201 -7 385 281 119 11 chr4 147590891 147591076 -54737271 + MARNA DNA Mariner 134 338 -248 298 295 53 0 chr4 147591126 147591221 -54737126 + MARNA DNA Mariner 411 510 -76 346 208 0 0 chr4 147591442 147591514 -54736833 - MER5B DNA MER1_type 0 178 107 1332 141 5 0 chr4 147591618 147591810 -54736537 + AluSq SINE Alu 94 286 -27 2282 83 3 0 chr4 147591821 147592154 -54736193 + AluSg1 SINE Alu 1 309 0 21 36 0 0 chr4 147592375 147592403 -54735944 + AT_rich Low_complexity Low_complexity 1 28 0 451 259 125 68 chr4 147592419 147592740 -54735607 - L1ME4a LINE L1 -94 6027 5689 231 69 0 0 chr4 147592879 147592908 -54735439 + Alu SINE Alu 147 175 -127 2275 99 7 0 chr4 147593152 147593456 -54734891 - AluSq SINE Alu -7 306 1 220 191 101 79 chr4 147593854 147593943 -54734404 - MER5B DNA MER1_type -47 131 41 1973 130 4 0 chr4 147594162 147594431 -54733916 + AluSx SINE Alu 30 299 -13 453 295 66 18 chr4 147594455 147594682 -54733665 + L1M4 LINE L1 4075 4312 -1834 24 0 0 0 chr4 147594968 147594992 -54733355 + AT_rich Low_complexity Low_complexity 1 24 0 301 212 104 28 chr4 147595186 147595364 -54732983 - MLT1H LTR MaLR -26 523 299 2335 80 10 3 chr4 147595414 147595714 -54732633 + AluSp SINE Alu 2 303 -10 262 96 0 115 chr4 147596012 147596064 -54732283 + AluJo SINE Alu 92 137 -165 2148 141 0 0 chr4 147596155 147596459 -54731888 - AluSg SINE Alu -6 304 1 2310 116 15 0 chr4 147596491 147596818 -54731529 - MER1B DNA MER1_type -2 337 6 520 208 0 21 chr4 147597096 147597240 -54731107 + CT-rich Low_complexity Low_complexity 4 144 0 1954 123 4 0 chr4 147597565 147597893 -54730454 + AluSx SINE Alu 6 334 0 2226 87 0 0 chr4 147598175 147598452 -54729895 + AluSp SINE Alu 1 277 -36 1790 96 9 0 chr4 147598452 147598682 -54729665 + AluSc SINE Alu 67 298 -11 2143 135 3 3 chr4 147599207 147599519 -54728828 + AluSx SINE Alu 1 312 0 2203 131 3 0 chr4 147599531 147599836 -54728511 + AluSq SINE Alu 1 306 -7 321 221 6 146 chr4 147600060 147600156 -54728191 - L1M4 LINE L1 -2721 3425 3317 1949 72 6 127 chr4 147600156 147600502 -54727845 - AluY SINE Alu -7 304 1 1067 0 8 0 chr4 147600503 147600626 -54727721 + (TTATG)n Simple_repeat Simple_repeat 1 124 0 2145 98 7 0 chr4 147600627 147600913 -54727434 - AluSq SINE Alu -25 288 1 321 221 6 146 chr4 147600913 147600970 -54727377 - L1M4 LINE L1 -2828 3318 3290 348 207 0 81 chr4 147600972 147601083 -54727264 + L1MC4 LINE L1 6607 6708 -1334 430 205 149 61 chr4 147601087 147601213 -54727134 - L1M4 LINE L1 -2859 3287 3173 1536 193 21 3 chr4 147601213 147601498 -54726849 + AluJb SINE Alu 1 290 -22 430 205 149 61 chr4 147601498 147601747 -54726600 - L1M4 LINE L1 -2973 3173 2879 2210 83 11 0 chr4 147601763 147602074 -54726273 + AluY SINE Alu 1 314 0 1604 169 23 0 chr4 147602127 147602387 -54725960 + AluSx SINE Alu 29 294 -18 415 299 85 59 chr4 147602387 147602762 -54725585 + L1ME3A LINE L1 5201 5598 -572 1268 234 37 24 chr4 147602762 147603057 -54725290 + AluJo SINE Alu 2 300 -2 415 299 85 59 chr4 147603057 147603323 -54725024 + L1ME3A LINE L1 5598 5856 -314 335 135 0 0 chr4 147603554 147603606 -54724741 - AluSx SINE Alu -10 291 240 2170 84 0 0 chr4 147603611 147603874 -54724473 - AluSx SINE Alu -49 263 1 2366 102 0 0 chr4 147603877 147604180 -54724167 - AluSx SINE Alu -7 305 3 23 0 0 0 chr4 147604228 147604251 -54724096 + AT_rich Low_complexity Low_complexity 1 23 0 1653 170 0 48 chr4 147604318 147604629 -54723718 - AluJo SINE Alu -16 296 1 1406 145 0 31 chr4 147604669 147604896 -54723451 - AluSx SINE Alu -92 220 1 268 344 89 39 chr4 147605618 147605798 -54722549 - MER5A DNA MER1_type 0 189 1 2159 96 0 14 chr4 147605973 147606253 -54722094 + AluSx SINE Alu 1 276 -36 2396 43 0 3 chr4 147606263 147606545 -54721802 + AluY SINE Alu 1 281 -30 266 81 0 0 chr4 147606508 147606545 -54721802 + Alu SINE Alu 244 314 0 307 0 0 0 chr4 147606545 147606579 -54721768 + (CAAA)n Simple_repeat Simple_repeat 3 72 0 411 188 1 7 chr4 147606699 147606795 -54721552 + AluJ/FLAM SINE Alu 2 62 -250 728 111 22 37 chr4 147606947 147607082 -54721265 + L1MB3 LINE L1 6044 6176 -7 2015 106 7 4 chr4 147607511 147607785 -54720562 - AluSp SINE Alu -12 301 27 281 296 0 0 chr4 147608402 147608490 -54719857 + L2 LINE L2 2698 2785 -529 512 227 36 82 chr4 147608629 147608849 -54719498 + L2 LINE L2 3098 3307 -6 2127 132 0 0 chr4 147609745 147609758 -54718589 - AluSx SINE Alu -16 296 284 291 54 0 0 chr4 147609758 147609795 -54718552 + (TA)n Simple_repeat Simple_repeat 2 38 0 2127 132 0 0 chr4 147609795 147610077 -54718270 - AluSx SINE Alu -27 285 1 549 171 8 26 chr4 147610079 147610196 -54718151 + L1ME1 LINE L1 6020 6134 -32 2325 103 0 3 chr4 147610266 147610577 -54717770 + AluY SINE Alu 1 310 -1 292 310 112 9 chr4 147611069 147611185 -54717162 - MIR SINE MIR -64 144 17 343 245 175 7 chr4 147611252 147611395 -54716952 + MIR SINE MIR 1 167 -95 672 136 0 27 chr4 147611398 147611508 -54716839 + FRAM SINE Alu 1 99 -77 962 159 40 53 chr4 147611794 147611870 -54716477 - AluJo SINE Alu -2 310 235 3305 145 25 22 chr4 147611870 147612200 -54716147 - MER41C LTR ERV1 0 554 220 2258 88 10 10 chr4 147612200 147612508 -54715839 + AluSg SINE Alu 1 308 -2 3305 145 25 22 chr4 147612508 147612729 -54715618 - MER41C LTR ERV1 -334 220 1 962 159 40 53 chr4 147612729 147612879 -54715468 - AluJo SINE Alu -77 235 87 184 316 19 92 chr4 147613494 147613700 -54714647 - L2 LINE L2 -108 3205 3015 2110 122 3 3 chr4 147613982 147614285 -54714062 - AluSx SINE Alu -9 303 1 2150 127 10 0 chr4 147614289 147614596 -54713751 - AluSq SINE Alu -3 310 1 2177 94 0 0 chr4 147615138 147615415 -54712932 + AluSx SINE Alu 27 303 -9 1389 154 38 68 chr4 147615600 147615770 -54712577 + L1MB8 LINE L1 5512 5686 -498 2021 146 0 0 chr4 147615770 147616065 -54712282 + AluSx SINE Alu 1 295 -17 1389 154 38 68 chr4 147616065 147616163 -54712184 + L1MB8 LINE L1 5686 5773 -411 2445 90 0 0 chr4 147616163 147616474 -54711873 + AluY SINE Alu 1 311 0 1389 154 38 68 chr4 147616474 147616497 -54711850 + L1MB8 LINE L1 5773 5795 -389 747 143 0 0 chr4 147616500 147616619 -54711728 + AluSc SINE Alu 181 299 -10 808 209 118 9 chr4 147616619 147616830 -54711517 + L1MB8 LINE L1 5942 6175 -3 490 103 15 0 chr4 147616934 147617002 -54711345 - AluJ/FRAM SINE Alu -23 289 221 1728 199 118 111 chr4 147617089 147617316 -54711031 + LTR8A LTR ERV1 1 225 -502 2107 123 0 3 chr4 147617316 147617608 -54710739 - AluSx SINE Alu -5 307 17 1728 199 118 111 chr4 147617608 147618102 -54710245 + LTR8A LTR ERV1 225 727 0 2188 118 7 0 chr4 147618265 147618562 -54709785 + AluSp SINE Alu 1 299 -14 1553 161 109 0 chr4 147618571 147618838 -54709509 + AluSx SINE Alu 1 296 -16 2895 98 51 24 chr4 147618927 147619209 -54709138 - MER4C LTR ERV1 0 465 165 2289 110 3 0 chr4 147619209 147619517 -54708830 + AluSx SINE Alu 1 309 -3 2895 98 51 24 chr4 147619517 147619684 -54708663 - MER4C LTR ERV1 -300 165 4 254 93 0 23 chr4 147619934 147619977 -54708370 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 1910 103 0 0 chr4 147620093 147620335 -54708012 - AluSg SINE Alu -68 242 1 28 48 0 0 chr4 147620378 147620420 -54707927 + AT_rich Low_complexity Low_complexity 1 42 0 396 78 52 0 chr4 147620425 147620502 -54707845 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 749 181 6 96 chr4 147620510 147620676 -54707671 - FRAM SINE Alu -25 151 1 2242 106 0 20 chr4 147620760 147621063 -54707284 + AluSg SINE Alu 2 298 -12 27 0 0 0 chr4 147621223 147621250 -54707097 + AT_rich Low_complexity Low_complexity 1 27 0 1359 189 11 0 chr4 147621825 147622090 -54706257 - L1MD1 LINE L1 0 6242 5975 322 224 9 47 chr4 147622091 147622188 -54706159 - MER34C LTR ERV1 0 585 491 1562 194 26 19 chr4 147622188 147622498 -54705849 + AluJb SINE Alu 1 312 0 2349 107 0 3 chr4 147622510 147622819 -54705528 + AluSq SINE Alu 5 312 -1 2029 131 3 7 chr4 147622899 147623205 -54705142 + AluSq SINE Alu 1 305 -8 1109 153 5 35 chr4 147623333 147623535 -54704812 - AluJo SINE Alu -32 280 85 323 214 94 34 chr4 147623657 147623774 -54704573 - MER34B LTR ERV1 -441 124 1 3120 179 51 35 chr4 147623774 147624415 -54703932 - L1MD1 LINE L1 -267 5975 5305 1680 156 48 17 chr4 147624415 147624710 -54703637 - AluJo SINE Alu -8 304 1 3120 179 51 35 chr4 147624710 147625047 -54703300 - L1MD1 LINE L1 -937 5305 4975 2267 97 3 3 chr4 147625096 147625394 -54702953 + AluSp SINE Alu 16 313 0 1196 173 0 61 chr4 147625402 147625633 -54702714 + AluJo SINE Alu 87 303 -9 451 202 10 20 chr4 147625655 147625754 -54702593 - L1MD1 LINE L1 -1198 4948 4851 705 143 0 0 chr4 147625754 147625859 -54702488 + FLAM_C SINE Alu 13 117 -26 1808 168 11 3 chr4 147626226 147626512 -54701835 + AluJo SINE Alu 1 288 -24 2276 68 7 4 chr4 147626533 147626814 -54701533 + AluSq SINE Alu 1 282 -31 228 67 0 0 chr4 147626818 147626848 -54701499 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 954 150 92 0 chr4 147627259 147627432 -54700915 + MER41B LTR ERV1 1 189 -446 749 114 8 68 chr4 147627451 147627583 -54700764 + AluSg SINE Alu 52 175 -135 1561 105 4 38 chr4 147627583 147627822 -54700525 + AluSg/x SINE Alu 67 297 -15 2779 158 11 18 chr4 147627822 147628108 -54700239 + MER41B LTR ERV1 184 467 -168 2113 106 22 26 chr4 147628108 147628419 -54699928 + AluSx SINE Alu 1 310 -2 2779 158 11 18 chr4 147628419 147628587 -54699760 + MER41B LTR ERV1 467 635 0 232 296 0 0 chr4 147628727 147628781 -54699566 + L2 LINE L2 3215 3268 -4 22 0 0 0 chr4 147628827 147628849 -54699498 + AT_rich Low_complexity Low_complexity 1 22 0 2074 105 0 11 chr4 147628855 147629169 -54699178 + AluSx SINE Alu 1 311 0 1416 150 276 3 chr4 147629330 147629663 -54698684 + LTR29 LTR ERV1 1 424 -198 990 131 46 17 chr4 147629657 147629832 -54698515 + LTR49 LTR ERV1 416 595 0 * 373 164 0 0 chr4 147629939 147629994 -54698353 - MER66B LTR ERV1 -137 349 295 296 294 76 11 chr4 147632402 147632494 -54695853 - FLAM_A SINE Alu -35 98 1 201 217 65 0 chr4 147632939 147632985 -54695362 - MIR3 SINE MIR -41 167 119 1847 158 7 10 chr4 147633545 147633848 -54694499 - AluSx SINE Alu -10 302 1 220 274 0 0 chr4 147633857 147633908 -54694439 + MER5A DNA MER1_type 55 105 -84 248 267 58 33 chr4 147635039 147635159 -54693188 + MER5A DNA MER1_type 39 161 -28 1967 125 7 23 chr4 147635278 147635583 -54692764 + AluSx SINE Alu 1 300 -12 2122 93 24 7 chr4 147635993 147636282 -54692065 - AluSx SINE Alu -18 294 1 1688 160 33 16 chr4 147636537 147636844 -54691503 - AluJo SINE Alu 0 312 1 1745 161 0 38 chr4 147637079 147637396 -54690951 - AluSx SINE Alu -7 305 1 2139 96 27 10 chr4 147638021 147638313 -54690034 + AluSg SINE Alu 1 297 -13 2222 109 7 0 chr4 147638592 147638894 -54689453 - AluSx SINE Alu -8 304 1 664 226 0 8 chr4 147638896 147639020 -54689327 - FLAM_A SINE Alu -10 123 1 2132 126 3 7 chr4 147639044 147639345 -54689002 - AluSq SINE Alu -13 300 1 1165 123 6 6 chr4 147639345 147639516 -54688831 - AluJb SINE Alu -8 304 134 1498 200 65 15 chr4 147639540 147639682 -54688665 - MER58B DNA MER1_type -2079 341 207 2442 55 3 0 chr4 147639682 147639972 -54688375 - AluY SINE Alu -20 291 1 1498 200 65 15 chr4 147639972 147640154 -54688193 - MER58B DNA MER1_type -2213 207 1 2273 83 11 0 chr4 147641010 147641313 -54687034 - AluSx SINE Alu 0 306 1 489 274 137 9 chr4 147641370 147641582 -54686765 - MIR SINE MIR -3 259 21 493 130 0 70 chr4 147641780 147641880 -54686467 - FLAM_C SINE Alu -1 142 50 1975 93 61 7 chr4 147642073 147642353 -54685994 - AluSx SINE Alu -17 295 1 262 278 44 22 chr4 147642591 147642681 -54685666 - L2 LINE L2 -44 3228 3137 23 0 0 0 chr4 147642805 147642828 -54685519 + AT_rich Low_complexity Low_complexity 1 23 0 2405 87 0 0 chr4 147643325 147643623 -54684724 - AluY SINE Alu -13 298 1 2273 92 0 0 chr4 147643885 147644187 -54684160 - AluSq SINE Alu 0 302 1 530 204 14 70 chr4 147644556 147644698 -54683649 + FLAM_C SINE Alu 9 142 -1 1108 130 0 0 chr4 147645087 147645248 -54683099 + AluSg/x SINE Alu 130 290 -20 2136 129 3 3 chr4 147645256 147645551 -54682796 + AluSx SINE Alu 1 295 -17 1577 151 27 50 chr4 147645566 147645864 -54682483 + AluJo SINE Alu 5 295 -17 1019 187 174 33 chr4 147645934 147646175 -54682172 - AluJb SINE Alu -15 297 23 1358 181 97 38 chr4 147646225 147646545 -54681802 - MSTD LTR MaLR -57 339 1 1732 144 41 4 chr4 147646764 147647034 -54681313 - AluJb SINE Alu -32 280 1 1185 254 93 46 chr4 147647209 147647303 -54681044 + L2 LINE L2 2354 2442 -871 1603 150 20 65 chr4 147647303 147647609 -54680738 - AluJo SINE Alu -20 292 1 1185 254 93 46 chr4 147647609 147648410 -54679937 + L2 LINE L2 2442 3289 -24 741 202 0 0 chr4 147648438 147648567 -54679780 - FLAM_A SINE Alu -4 129 1 933 121 0 0 chr4 147649611 147649743 -54678604 - FLAM_C SINE Alu -1 132 1 909 139 17 81 chr4 147649919 147650092 -54678255 + FRAM SINE Alu 5 166 0 1933 119 18 4 chr4 147650092 147650398 -54677949 + AluSx SINE Alu 1 310 0 193 250 68 0 chr4 147650435 147650479 -54677868 - MIR SINE MIR -122 86 40 324 231 75 22 chr4 147651094 147651228 -54677119 - MER58C DNA MER1_type -8 207 67 837 124 16 16 chr4 147651232 147651361 -54676986 + FLAM_C SINE Alu 5 133 0 322 280 88 1 chr4 147651442 147651579 -54676768 - L1PBa LINE L1 -826 1825 397 21 0 0 0 chr4 147651760 147651781 -54676566 + AT_rich Low_complexity Low_complexity 1 21 0 2015 107 7 0 chr4 147651907 147652207 -54676140 - AluSq SINE Alu 0 302 1 2285 60 26 30 chr4 147652217 147652519 -54675828 - AluY SINE Alu -10 301 1 991 247 98 11 chr4 147652706 147652993 -54675354 - MER119 DNA MER1_type -269 314 3 287 136 0 0 chr4 147652995 147653039 -54675308 - MER5A DNA MER1_type -136 53 10 2087 124 20 3 chr4 147654251 147654550 -54673797 - AluSx SINE Alu -8 304 1 2410 85 7 0 chr4 147654816 147655122 -54673225 + AluSp SINE Alu 2 309 -4 2198 85 4 0 chr4 147655815 147656086 -54672261 + AluSp SINE Alu 1 272 -41 536 99 0 0 chr4 147656086 147656157 -54672190 + AluSg/x SINE Alu 216 286 -24 258 32 0 0 chr4 147656157 147656188 -54672159 + (TA)n Simple_repeat Simple_repeat 2 32 0 1973 68 0 0 chr4 147657694 147657930 -54670417 - AluY SINE Alu -12 299 64 755 130 0 41 chr4 147658190 147658313 -54670034 + FLAM_C SINE Alu 1 118 -15 21 71 0 0 chr4 147658488 147658530 -54669817 + AT_rich Low_complexity Low_complexity 1 42 0 960 102 0 0 chr4 147658746 147658873 -54669474 - AluY SINE Alu -10 301 175 2255 114 0 0 chr4 147659254 147659544 -54668803 + AluSq SINE Alu 1 290 -23 1817 150 10 10 chr4 147660455 147660749 -54667598 - AluJb SINE Alu -14 298 5 352 271 8 34 chr4 147661108 147661226 -54667121 - MIR SINE MIR -136 126 12 1313 100 0 0 chr4 147661413 147661583 -54666764 - AluSg/x SINE Alu -6 304 135 24 0 0 0 chr4 147662242 147662266 -54666081 + AT_rich Low_complexity Low_complexity 1 24 0 2367 52 0 23 chr4 147662955 147663265 -54665082 - AluY SINE Alu -8 303 1 1031 64 0 0 chr4 147663265 147663390 -54664957 - AluSp/q SINE Alu -7 306 182 2145 111 3 10 chr4 147663494 147663791 -54664556 - AluY SINE Alu -16 295 1 216 338 135 22 chr4 147664800 147665022 -54663325 - L2 LINE L2 -337 2977 2731 560 144 31 0 chr4 147665350 147665447 -54662900 + U6 snRNA snRNA 1 100 -7 445 186 20 29 chr4 147665549 147665651 -54662696 - MIR SINE MIR 0 262 162 1999 119 10 17 chr4 147666404 147666697 -54661650 - AluSx SINE Alu -21 291 1 22 35 0 0 chr4 147668147 147668176 -54660171 + AT_rich Low_complexity Low_complexity 1 29 0 314 44 0 22 chr4 147668260 147668305 -54660042 + (TA)n Simple_repeat Simple_repeat 1 44 0 1655 197 7 13 chr4 147669723 147670022 -54658325 - AluJo SINE Alu -14 298 2 2244 102 14 0 chr4 147671051 147671346 -54657001 - AluSx SINE Alu -13 299 1 2266 108 0 7 chr4 147672643 147672950 -54655397 + AluSx SINE Alu 1 305 -7 180 216 27 0 chr4 147673259 147673296 -54655051 - L2 LINE L2 -93 3220 3183 2145 104 3 23 chr4 147673779 147674087 -54654260 + AluSx SINE Alu 1 302 -10 2301 88 0 0 chr4 147674350 147674668 -54653679 + AluSp SINE Alu 1 318 0 1480 187 8 0 chr4 147674989 147675240 -54653107 + AluJo SINE Alu 42 294 -18 243 0 0 0 chr4 147675761 147675788 -54652559 + (T)n Simple_repeat Simple_repeat 1 27 0 25 0 0 0 chr4 147675860 147675885 -54652462 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr4 147675906 147675938 -54652409 + AT_rich Low_complexity Low_complexity 1 32 0 743 206 0 0 chr4 147676080 147676216 -54652131 + AluJo SINE Alu 1 136 -176 25 31 0 0 chr4 147676216 147676248 -54652099 + AT_rich Low_complexity Low_complexity 1 32 0 1116 187 65 24 chr4 147676359 147676605 -54651742 + AluJo SINE Alu 1 256 -56 1603 189 6 59 chr4 147676746 147677068 -54651279 + AluJb SINE Alu 1 305 -7 298 281 82 47 chr4 147677150 147677321 -54651026 + MER5B DNA MER1_type 1 177 -1 2246 77 25 0 chr4 147677787 147678073 -54650274 - AluY SINE Alu -18 293 1 180 152 0 0 chr4 147678607 147678640 -54649707 + (CATA)n Simple_repeat Simple_repeat 2 34 0 1908 136 35 7 chr4 147678641 147678928 -54649419 - AluJb SINE Alu -17 295 1 373 176 85 127 chr4 147679365 147679530 -54648817 - MER103 DNA DNA -1 165 8 2045 125 20 7 chr4 147679608 147679903 -54648444 - AluJo SINE Alu -13 299 1 2202 124 0 0 chr4 147680058 147680349 -54647998 - AluSx SINE Alu -19 293 3 275 125 21 62 chr4 147680989 147681085 -54647262 + (TA)n Simple_repeat Simple_repeat 2 93 0 572 150 60 0 chr4 147681100 147681200 -54647147 - FLAM_A SINE Alu -21 121 16 23 0 0 0 chr4 147683427 147683450 -54644897 + AT_rich Low_complexity Low_complexity 1 23 0 2069 123 13 3 chr4 147683609 147683910 -54644437 + AluSx SINE Alu 1 304 -8 347 183 0 14 chr4 147684173 147684244 -54644103 - MER2 DNA MER2_type -1 344 275 2232 94 17 3 chr4 147684245 147684543 -54643804 + AluSc SINE Alu 1 302 -7 502 137 0 111 chr4 147684595 147684712 -54643635 - MER2 DNA MER2_type -241 104 1 286 245 153 20 chr4 147684955 147685053 -54643294 + MIR SINE MIR 4 114 -148 2319 97 7 0 chr4 147685189 147685488 -54642859 - AluSx SINE Alu -10 302 2 24 32 0 0 chr4 147685558 147685589 -54642758 + AT_rich Low_complexity Low_complexity 1 31 0 231 298 138 11 chr4 147686793 147686887 -54641460 - L2 LINE L2 -13 3300 3195 720 203 107 6 chr4 147686892 147687069 -54641278 - MER46A DNA MER2_type -1 235 41 293 137 20 0 chr4 147688350 147688401 -54639946 - MER51D LTR ERV1 -106 551 500 399 146 125 10 chr4 147688404 147688500 -54639847 - MER3 DNA MER1_type -50 159 53 1048 178 157 34 chr4 147688520 147688702 -54639645 - Charlie1b DNA MER1_type -2238 523 365 1795 166 10 14 chr4 147688702 147688991 -54639356 - AluJo SINE Alu -24 288 1 1048 178 157 34 chr4 147688991 147689244 -54639103 - Charlie1b DNA MER1_type -2396 365 32 2159 109 20 10 chr4 147689396 147689699 -54638648 + AluSx SINE Alu 6 311 -1 320 272 157 20 chr4 147690766 147690913 -54637434 - MIR3 SINE MIR -18 190 24 306 171 0 0 chr4 147694172 147694242 -54634105 + (CGG)n Simple_repeat Simple_repeat 1 70 0 290 222 0 0 chr4 147695102 147695156 -54633191 + L2 LINE L2 3259 3312 -1 528 203 34 0 chr4 147695593 147695711 -54632636 + FRAM SINE Alu 1 119 -57 318 200 71 35 chr4 147695717 147695802 -54632545 - MIR3 SINE MIR -39 169 82 22 0 0 0 chr4 147696334 147696356 -54631991 + AT_rich Low_complexity Low_complexity 1 22 0 212 302 0 0 chr4 147696382 147696445 -54631902 - L2 LINE L2 0 3313 3251 23 0 0 0 chr4 147696627 147696650 -54631697 + AT_rich Low_complexity Low_complexity 1 23 0 699 197 0 0 chr4 147697101 147697223 -54631124 - FLAM_C SINE Alu -21 122 1 2541 61 0 0 chr4 147697262 147697573 -54630774 - AluY SINE Alu 0 311 1 1630 135 0 0 chr4 147697813 147698043 -54630304 + AluSx SINE Alu 1 230 -82 759 189 122 0 chr4 147698166 147698314 -54630033 - AluJo SINE Alu -146 166 1 286 253 93 20 chr4 147698542 147698692 -54629655 - L1M4 LINE L1 -3605 2541 2381 2339 87 0 3 chr4 147698784 147699082 -54629265 - AluSg SINE Alu -13 297 1 339 225 162 21 chr4 147699637 147699779 -54628568 - L2 LINE L2 -2 3311 3150 362 335 40 50 chr4 147700160 147700360 -54627987 - L2 LINE L2 -200 3072 2875 262 259 41 44 chr4 147700389 147700582 -54627765 + MIR SINE MIR 5 254 -8 1618 192 58 0 chr4 147700691 147700983 -54627364 + 7SLRNA srpRNA srpRNA 1 309 -11 580 313 75 72 chr4 147701047 147701379 -54626968 - L2 LINE L2 -528 2786 2454 2135 65 0 55 chr4 147702555 147702863 -54625484 + AluY SINE Alu 1 291 -20 2198 98 0 3 chr4 147702872 147703167 -54625180 + AluSx SINE Alu 1 294 -18 1139 186 49 0 chr4 147703202 147703406 -54624941 - AluJb SINE Alu -12 300 87 2657 158 30 34 chr4 147703487 147703981 -54624366 + MER21B LTR ERV1 1 492 -371 776 150 40 81 chr4 147703991 147704164 -54624183 + MER21B LTR ERV1 671 836 -27 2301 116 3 0 chr4 147704542 147704852 -54623495 + AluSx SINE Alu 1 311 -1 477 273 23 8 chr4 147705594 147705722 -54622625 + L2 LINE L2 3180 3309 -4 1747 164 3 27 chr4 147705917 147706210 -54622137 + AluJo SINE Alu 1 286 -26 979 207 12 0 chr4 147706217 147706386 -54621961 + MER5A DNA MER1_type 19 189 0 26 50 0 0 chr4 147706441 147706481 -54621866 + AT_rich Low_complexity Low_complexity 1 40 0 1384 199 19 51 chr4 147706762 147707051 -54621296 + Charlie4a DNA MER1_type 87 359 -1602 2047 130 7 13 chr4 147707051 147707359 -54620988 - AluSq SINE Alu -7 306 1 1384 199 19 51 chr4 147707359 147707501 -54620846 + Charlie4a DNA MER1_type 359 504 -4 672 97 30 45 chr4 147707713 147707847 -54620500 + L1MA4 LINE L1 6169 6300 0 255 318 19 0 chr4 147708040 147708147 -54620200 - MER46C DNA MER2_type -40 298 190 421 274 87 23 chr4 147708494 147708694 -54619653 - MIR SINE MIR -13 249 38 205 286 14 29 chr4 147708801 147708871 -54619476 + MIR3 SINE MIR 15 83 -125 472 186 10 0 chr4 147709854 147709951 -54618396 - MER103 DNA DNA -58 108 11 1618 139 77 68 chr4 147709967 147710319 -54618028 + L1PA16 LINE L1 5805 6159 -7 380 323 114 6 chr4 147710853 147711011 -54617336 - L3 LINE CR1 -9 1568 1394 859 168 144 12 chr4 147711671 147711844 -54616503 - AluJo SINE Alu -18 294 99 242 324 105 0 chr4 147712690 147712795 -54615552 + L2 LINE L2 3136 3251 -21 21 0 0 0 chr4 147713012 147713033 -54615314 + AT_rich Low_complexity Low_complexity 1 21 0 282 134 90 45 chr4 147713033 147713100 -54615247 - LTR5 LTR ERVK -164 805 736 661 173 9 0 chr4 147713120 147713230 -54615117 + AluSg/x SINE Alu 190 300 -9 1701 189 0 0 chr4 147713395 147713686 -54614661 + AluJb SINE Alu 6 296 -16 323 114 0 0 chr4 147713688 147713732 -54614615 + Alu SINE Alu 1 44 -264 1027 128 27 0 chr4 147713732 147713880 -54614467 + AluSg/x SINE Alu 140 291 -21 2128 120 0 22 chr4 147713882 147714199 -54614148 + AluSx SINE Alu 1 310 -2 2189 73 22 7 chr4 147714601 147714876 -54613471 + AluSc SINE Alu 1 279 -30 486 0 0 0 chr4 147714882 147714936 -54613411 + (CA)n Simple_repeat Simple_repeat 1 54 0 282 56 0 0 chr4 147714966 147715002 -54613345 + (T)n Simple_repeat Simple_repeat 1 36 0 23 68 0 0 chr4 147715656 147715700 -54612647 + GC_rich Low_complexity Low_complexity 1 44 0 722 192 41 17 chr4 147715990 147716162 -54612185 + MER104 DNA MER2_type 2 177 -3 1790 114 64 7 chr4 147716163 147716467 -54611880 - AluSg SINE Alu 0 310 1 23 78 0 0 chr4 147716930 147716981 -54611366 + AT_rich Low_complexity Low_complexity 1 51 0 381 218 88 48 chr4 147717622 147717769 -54610578 + L1ME4a LINE L1 5968 6120 -1 1475 135 66 16 chr4 147717769 147718013 -54610334 + AluSx SINE Alu 17 272 -40 2329 86 0 16 chr4 147718013 147718315 -54610032 + AluSc SINE Alu 1 299 -10 22 70 0 0 chr4 147718564 147718607 -54609740 + AT_rich Low_complexity Low_complexity 1 43 0 180 0 0 0 chr4 147719366 147719386 -54608961 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 677 214 110 0 chr4 147719655 147719800 -54608547 + LTR33 LTR ERVL 1 161 -360 509 302 40 15 chr4 147719893 147720095 -54608252 + LTR33 LTR ERVL 309 515 -6 2185 118 16 0 chr4 147720110 147720415 -54607932 - AluSx SINE Alu -2 310 1 1428 161 7 48 chr4 147720786 147721059 -54607288 - AluJo SINE Alu -20 292 31 2679 55 0 0 chr4 147721437 147721748 -54606599 - AluY SINE Alu 0 311 1 41 0 0 0 chr4 147721842 147721883 -54606464 + AT_rich Low_complexity Low_complexity 1 41 0 2044 125 0 14 chr4 147722824 147723141 -54605206 - AluY SINE Alu 0 311 1 1905 115 10 17 chr4 147723243 147723531 -54604816 + AluSc SINE Alu 1 286 -23 789 211 0 0 chr4 147724321 147724454 -54603893 - FLAM_A SINE Alu 0 133 1 553 269 24 88 chr4 147725829 147726123 -54602224 + HAL1 LINE L1 3 277 -2230 310 313 94 8 chr4 147726142 147726270 -54602077 + HAL1 LINE L1 371 509 -1998 272 241 0 0 chr4 147726295 147726349 -54601998 + HAL1 LINE L1 792 845 -1662 2907 226 40 58 chr4 147726368 147727273 -54601074 + HAL1 LINE L1 991 1879 -628 2129 125 0 0 chr4 147727972 147728260 -54600087 + AluSx SINE Alu 14 301 -11 1776 150 16 23 chr4 147728264 147728570 -54599777 + AluJo SINE Alu 1 304 -8 421 309 118 44 chr4 147728759 147728792 -54599555 + L2 LINE L2 1862 1891 -1423 2150 137 0 0 chr4 147728792 147729098 -54599249 - AluJb SINE Alu -6 306 1 421 309 118 44 chr4 147729098 147729224 -54599123 + L2 LINE L2 1891 2006 -1308 2139 107 14 0 chr4 147729224 147729513 -54598834 - AluSp SINE Alu -20 293 1 421 309 118 44 chr4 147729513 147729808 -54598539 + L2 LINE L2 2006 2351 -963 1894 185 92 49 chr4 147730195 147730643 -54597704 + MLT1C LTR MaLR 1 467 0 1007 110 86 0 chr4 147731415 147731578 -54596769 - MER53 DNA DNA -12 177 1 232 189 75 0 chr4 147732628 147732681 -54595666 - MER3 DNA MER1_type -137 72 16 770 245 199 24 chr4 147732743 147733114 -54595233 - L1ME1 LINE L1 -182 5984 5549 270 56 0 0 chr4 147733114 147733150 -54595197 + (TA)n Simple_repeat Simple_repeat 1 36 0 27 0 0 0 chr4 147733420 147733447 -54594900 + AT_rich Low_complexity Low_complexity 1 27 0 293 119 0 0 chr4 147733451 147733493 -54594854 - AluSq SINE Alu -13 290 249 1488 85 5 5 chr4 147733493 147733682 -54594665 - AluSq SINE Alu -124 189 1 310 208 14 14 chr4 147733683 147733755 -54594592 + MIR SINE MIR 191 262 0 494 195 114 0 chr4 147733767 147733890 -54594457 + MIR SINE MIR 126 262 0 233 300 67 17 chr4 147733902 147734022 -54594325 + L2 LINE L2 3175 3300 -13 843 214 0 32 chr4 147734639 147734826 -54593521 + AluJo SINE Alu 121 301 -11 357 189 124 89 chr4 147735074 147735168 -54593179 - MIR SINE MIR -71 191 87 1726 104 160 0 chr4 147735168 147735437 -54592910 + AluSx SINE Alu 1 312 0 357 189 124 89 chr4 147735437 147735511 -54592836 - MIR SINE MIR -175 87 17 252 0 0 0 chr4 147735522 147735550 -54592797 + (TCC)n Simple_repeat Simple_repeat 2 29 0 1864 154 4 4 chr4 147736014 147736294 -54592053 - AluJb SINE Alu -32 280 1 26 82 0 0 chr4 147736446 147736507 -54591840 + AT_rich Low_complexity Low_complexity 1 61 0 2438 73 3 3 chr4 147736744 147737046 -54591301 - AluSc SINE Alu -7 302 1 863 153 0 22 chr4 147737590 147737727 -54590620 - AluJo SINE Alu -178 134 1 478 164 127 37 chr4 147738426 147738560 -54589787 - MER69 DNA AcHobo -2 2524 2379 1001 171 24 0 chr4 147738561 147738731 -54589616 - AluJb SINE Alu -5 307 134 210 37 0 0 chr4 147738732 147738759 -54589588 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2431 42 0 3 chr4 147738759 147739043 -54589304 - AluY SINE Alu -28 283 1 307 345 143 28 chr4 147739111 147739517 -54588830 + L2 LINE L2 2586 3043 -229 276 203 0 29 chr4 147739671 147739740 -54588607 + MER69 DNA AcHobo 2451 2517 -9 686 110 0 11 chr4 147739745 147739836 -54588511 + AluY SINE Alu 2 91 -220 311 87 22 0 chr4 147739945 147739991 -54588356 - Alu SINE Alu -255 47 1 534 191 17 9 chr4 147740001 147740116 -54588231 - LTR38B LTR ERV1 -492 118 3 1268 179 25 40 chr4 147740687 147740954 -54587393 + MER33 DNA MER1_type 1 257 -2328 2168 109 0 3 chr4 147740954 147741265 -54587082 + AluSg SINE Alu 1 310 0 1268 179 25 40 chr4 147741265 147741332 -54587015 + MER33 DNA MER1_type 257 324 0 2341 99 0 6 chr4 147741793 147742106 -54586241 + AluSx SINE Alu 1 311 -1 222 192 13 51 chr4 147742370 147742448 -54585899 + CT-rich Low_complexity Low_complexity 4 78 0 2290 96 3 3 chr4 147742640 147742942 -54585405 + AluSx SINE Alu 1 302 -10 2472 117 40 35 chr4 147743590 147743713 -54584634 - MER65A LTR ERV1 0 445 324 2402 172 38 83 chr4 147743713 147744060 -54584287 - MLT2B3 LTR ERVL 0 554 242 225 0 0 0 chr4 147744060 147744085 -54584262 + (GA)n Simple_repeat Simple_repeat 1 25 0 2402 172 38 83 chr4 147744085 147744317 -54584030 - MLT2B3 LTR ERVL -312 242 1 2472 117 40 35 chr4 147744317 147744595 -54583752 - MER65A LTR ERV1 -121 324 42 219 36 0 0 chr4 147744606 147744634 -54583713 + (T)n Simple_repeat Simple_repeat 1 28 0 1749 173 3 19 chr4 147744759 147745066 -54583281 + AluJo SINE Alu 1 302 -10 2766 139 5 16 chr4 147745089 147745536 -54582811 - L1MB2 LINE L1 -2 6169 5728 1949 147 3 19 chr4 147745553 147745867 -54582480 - AluJb SINE Alu 0 312 4 2228 121 3 13 chr4 147746356 147746671 -54581676 - AluSx SINE Alu 0 312 1 198 103 0 0 chr4 147746798 147746827 -54581520 + (CA)n Simple_repeat Simple_repeat 2 30 0 2234 107 10 3 chr4 147747066 147747365 -54580982 + AluSx SINE Alu 1 301 -11 2357 98 0 7 chr4 147747524 147747831 -54580516 + AluSx SINE Alu 1 305 -7 947 165 5 120 chr4 147747861 147747955 -54580392 - MER45A DNA AcHobo -1404 177 116 2254 85 0 33 chr4 147747955 147748261 -54580086 + AluY SINE Alu 1 296 -15 947 165 5 120 chr4 147748261 147748366 -54579981 - MER45A DNA AcHobo -1465 116 1 484 149 96 0 chr4 147748920 147749014 -54579333 + L1MB3 LINE L1 6074 6176 -7 21 0 0 0 chr4 147749014 147749035 -54579312 + AT_rich Low_complexity Low_complexity 1 21 0 2325 90 10 0 chr4 147749147 147749448 -54578899 - AluSq SINE Alu -9 304 1 911 194 46 95 chr4 147749785 147750068 -54578279 - MLT1B LTR MaLR -121 269 1 381 211 0 0 chr4 147750068 147750139 -54578208 - L1MB2 LINE L1 -531 5590 5520 301 245 66 9 chr4 147751014 147751120 -54577227 - HAL1b LINE L1 0 1348 1237 351 278 88 21 chr4 147751198 147751392 -54576955 - L1ME4a LINE L1 -258 5863 5657 272 267 44 0 chr4 147751683 147751773 -54576574 - L1MC4 LINE L1 0 8042 7949 2155 99 3 22 chr4 147751802 147752116 -54576231 - AluSg SINE Alu -2 308 1 1068 83 0 8 chr4 147752119 147752252 -54576095 - AluSp SINE Alu -181 132 1 1265 225 21 15 chr4 147752430 147752755 -54575592 + L1ME1 LINE L1 5808 6134 -32 729 127 127 12 chr4 147752794 147752960 -54575387 + L1MB8 LINE L1 5641 5825 -353 2386 77 0 3 chr4 147752969 147753266 -54575081 + AluY SINE Alu 5 300 -11 25 0 0 0 chr4 147753269 147753294 -54575053 + AT_rich Low_complexity Low_complexity 1 25 0 835 172 0 0 chr4 147753298 147753420 -54574927 + AluJb SINE Alu 4 125 -187 1958 75 88 34 chr4 147753431 147753725 -54574622 + AluY SINE Alu 1 310 -1 1484 174 21 17 chr4 147753735 147754022 -54574325 + L1MB8 LINE L1 5811 6098 -80 1765 159 28 67 chr4 147754022 147754282 -54574065 - MER2 DNA MER2_type 0 345 101 626 240 0 8 chr4 147754282 147754407 -54573940 - FLAM_C SINE Alu -8 125 2 1765 159 28 67 chr4 147754407 147754505 -54573842 - MER2 DNA MER2_type -244 101 1 292 225 42 0 chr4 147754563 147754634 -54573713 + L1MB7 LINE L1 6104 6177 -7 22 56 0 0 chr4 147756610 147756646 -54571701 + GC_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 147756850 147756872 -54571475 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 147757419 147757440 -54570907 + GC_rich Low_complexity Low_complexity 1 21 0 2362 76 20 0 chr4 147758458 147758759 -54569588 + AluSx SINE Alu 1 307 -5 2402 68 0 3 chr4 147758759 147759051 -54569296 + AluSq SINE Alu 1 291 -22 765 249 53 57 chr4 147759593 147759894 -54568453 + MLT1H LTR MaLR 29 328 -221 1572 93 75 0 chr4 147760156 147760370 -54567977 - MER30 DNA MER1_type 0 230 1 27 73 0 0 chr4 147760495 147760550 -54567797 + AT_rich Low_complexity Low_complexity 1 55 0 1722 149 6 44 chr4 147760801 147761122 -54567225 + AluJo SINE Alu 1 309 -3 963 242 0 5 chr4 147761404 147761590 -54566757 - MLT1F LTR MaLR -357 185 1 2228 93 10 0 chr4 147762841 147763132 -54565215 - AluSq SINE Alu -19 294 1 2304 104 0 0 chr4 147763292 147763589 -54564758 + AluSx SINE Alu 1 297 -15 515 234 129 0 chr4 147763878 147764002 -54564345 - MIR SINE MIR -111 151 12 328 133 0 0 chr4 147764052 147764112 -54564235 - AluJo SINE Alu -1 301 242 816 183 30 76 chr4 147764112 147764309 -54564038 - AluJo SINE Alu -124 188 1 1810 147 42 0 chr4 147764467 147764752 -54563595 - AluJb SINE Alu -13 299 3 1799 138 3 31 chr4 147765092 147765383 -54562964 + 7SLRNA srpRNA srpRNA 8 290 -30 1952 141 0 26 chr4 147765399 147765703 -54562644 - AluSx SINE Alu -16 296 1 1735 168 14 0 chr4 147765754 147766040 -54562307 + AluJb SINE Alu 1 290 -22 1364 127 55 173 chr4 147766064 147766200 -54562147 + AluYb8 SINE Alu 1 151 -157 2170 101 24 0 chr4 147766200 147766487 -54561860 + AluSc SINE Alu 1 294 -15 1364 127 55 173 chr4 147766487 147766697 -54561650 + AluYb8 SINE Alu 151 306 -2 2182 105 23 0 chr4 147766708 147767012 -54561335 + AluSx SINE Alu 1 311 -1 2278 118 0 6 chr4 147767160 147767474 -54560873 + AluSq SINE Alu 1 312 -1 243 0 0 0 chr4 147767716 147767743 -54560604 + (TA)n Simple_repeat Simple_repeat 2 28 0 1463 248 35 59 chr4 147767753 147768173 -54560174 + LTR38 LTR ERV1 77 485 -71 2380 72 10 13 chr4 147768173 147768478 -54559869 - AluSp SINE Alu -9 304 1 1463 248 35 59 chr4 147768478 147768549 -54559798 + LTR38 LTR ERV1 485 556 0 2023 132 3 0 chr4 147768709 147768996 -54559351 - AluSx SINE Alu -24 288 1 624 211 61 0 chr4 147769614 147769728 -54558619 + FLAM_C SINE Alu 2 122 -21 207 0 0 0 chr4 147769739 147769762 -54558585 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 216 171 0 24 chr4 147769896 147769937 -54558410 + CT-rich Low_complexity Low_complexity 3 42 0 772 103 0 51 chr4 147770673 147770790 -54557557 - HY1 scRNA scRNA -1 111 1 522 158 0 12 chr4 147770931 147771013 -54557334 - AluJ/FRAM SINE Alu -11 301 221 2317 88 10 7 chr4 147771035 147771340 -54557007 - AluSc SINE Alu -1 308 3 2787 159 39 2 chr4 147771353 147771819 -54556528 - MER31A LTR ERV1 -2 483 1 269 256 58 12 chr4 147771820 147771906 -54556441 + MLT1K LTR MaLR 499 588 0 3059 175 27 90 chr4 147771956 147772004 -54556343 - LTR8 LTR ERV1 0 691 642 2115 124 7 0 chr4 147772004 147772294 -54556053 - AluSg SINE Alu -18 292 1 3059 175 27 90 chr4 147772294 147772982 -54555365 - LTR8 LTR ERV1 -49 642 1 918 147 8 0 chr4 147773124 147773253 -54555094 - FLAM_C SINE Alu -3 130 1 2441 84 3 0 chr4 147773281 147773580 -54554767 + AluSp SINE Alu 1 300 -13 2451 115 48 28 chr4 147773628 147773985 -54554362 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr4 147774022 147774045 -54554302 + AT_rich Low_complexity Low_complexity 1 23 0 1210 197 37 109 chr4 147774104 147774185 -54554162 + MER4A LTR ERV1 1 86 -379 243 88 0 0 chr4 147774185 147774219 -54554128 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1210 197 37 109 chr4 147774219 147774853 -54553494 + MER4A LTR ERV1 86 465 0 1933 171 0 0 chr4 147774866 147775159 -54553188 + AluJb SINE Alu 1 293 -19 1888 205 72 0 chr4 147775295 147775670 -54552677 - Tigger7 DNA MER2_type -2085 402 1 1299 205 44 126 chr4 147775678 147775990 -54552357 - L1ME LINE L1 -398 5768 5432 1941 118 31 3 chr4 147775990 147776277 -54552070 - AluSx SINE Alu -17 295 1 1299 205 44 126 chr4 147776277 147776413 -54551934 - L1ME LINE L1 -734 5432 5286 949 70 86 0 chr4 147776413 147776541 -54551806 + MER85 DNA T2_type 1 139 0 1513 156 0 48 chr4 147776544 147776813 -54551534 - AluJo SINE Alu -56 256 1 1299 205 44 126 chr4 147776813 147776873 -54551474 - L1ME LINE L1 -882 5284 5221 2136 112 3 3 chr4 147776873 147777160 -54551187 + AluSx SINE Alu 1 287 -25 431 35 18 0 chr4 147777160 147777217 -54551130 + (TATAA)n Simple_repeat Simple_repeat 4 61 0 1299 205 44 126 chr4 147777217 147777357 -54550990 - L1ME LINE L1 -944 5222 5201 2430 86 3 0 chr4 147777357 147777659 -54550688 + AluSg SINE Alu 1 303 -7 1299 205 44 126 chr4 147777659 147777909 -54550438 - L1ME LINE L1 -965 5201 4932 1908 151 15 32 chr4 147777914 147778042 -54550305 - MER65A LTR ERV1 0 445 316 2527 57 0 3 chr4 147778042 147778343 -54550004 - AluY SINE Alu -11 300 1 1908 151 15 32 chr4 147778343 147778552 -54549795 - MER65A LTR ERV1 -129 316 114 2019 146 0 0 chr4 147778552 147778853 -54549494 - AluSx SINE Alu -11 301 1 322 119 0 0 chr4 147778853 147778912 -54549435 - Alu SINE Alu -256 44 3 * 672 179 0 0 chr4 147778912 147779019 -54549328 - MER65A LTR ERV1 -337 108 2 955 137 0 0 chr4 147779053 147779184 -54549163 + FLAM_C SINE Alu 3 133 0 7783 205 83 69 chr4 147779189 147781034 -54547313 - MER65A-int LTR ERV1 -16 5094 3277 2478 70 0 0 chr4 147781034 147781332 -54547015 - AluY SINE Alu -13 298 1 7783 205 83 69 chr4 147781332 147781515 -54546832 - MER65A-int LTR ERV1 -1833 3277 3098 1415 141 32 149 chr4 147781515 147781863 -54546484 - AluYb8 SINE Alu -1 307 1 7783 205 83 69 chr4 147781863 147782238 -54546109 - MER65A-int LTR ERV1 -2012 3098 2634 2024 127 7 3 chr4 147782238 147782537 -54545810 - AluSx SINE Alu -12 300 1 7783 205 83 69 chr4 147782537 147782681 -54545666 - MER65A-int LTR ERV1 -2476 2634 2494 1411 90 0 0 chr4 147782782 147782960 -54545387 - AluY SINE Alu -133 178 1 612 234 34 29 chr4 147782960 147783135 -54545212 - L1ME LINE L1 -611 5551 5376 2120 234 114 7 chr4 147783137 147783376 -54544971 - L1ME LINE L1 -1337 4809 4597 709 211 8 0 chr4 147783376 147783504 -54544843 - FLAM_A SINE Alu -1 132 4 2120 234 114 7 chr4 147783504 147784094 -54544253 - L1ME LINE L1 -1549 4597 3741 1222 169 70 5 chr4 147784129 147784265 -54544082 - AluJb SINE Alu -45 267 111 726 58 25 8 chr4 147784265 147784386 -54543961 + (TTTTA)n Simple_repeat Simple_repeat 2 124 0 1222 169 70 5 chr4 147784386 147784462 -54543885 - AluJb SINE Alu -201 111 41 665 195 8 8 chr4 147784467 147784585 -54543762 - FLAM_C SINE Alu -15 118 1 24 53 0 0 chr4 147784664 147784702 -54543645 + AT_rich Low_complexity Low_complexity 1 38 0 387 0 0 0 chr4 147784977 147785020 -54543327 + (TG)n Simple_repeat Simple_repeat 2 44 0 450 308 50 6 chr4 147785134 147785316 -54543031 + L2 LINE L2 2945 3134 -179 234 282 0 14 chr4 147785326 147785397 -54542950 + L2 LINE L2 3244 3313 0 2383 61 10 3 chr4 147786404 147786701 -54541646 - AluY SINE Alu -12 299 1 2373 78 0 3 chr4 147787873 147788166 -54540181 + AluSc SINE Alu 2 293 -16 27 0 0 0 chr4 147789257 147789284 -54539063 + AT_rich Low_complexity Low_complexity 1 27 0 1180 203 0 50 chr4 147789676 147789937 -54538410 - AluJo SINE Alu -23 289 42 459 277 159 61 chr4 147789971 147790208 -54538139 + L2 LINE L2 1459 1671 -1643 1945 142 3 3 chr4 147790208 147790511 -54537836 + AluJb SINE Alu 1 303 -9 459 277 159 61 chr4 147790511 147790844 -54537503 + L2 LINE L2 1671 2085 -1229 1589 259 136 47 chr4 147790844 147791439 -54536908 - MER115 DNA AcHobo 0 693 46 1097 259 121 38 chr4 147791708 147792339 -54536008 - L2 LINE L2 0 3313 2610 369 86 100 14 chr4 147792339 147792409 -54535938 + MADE1 DNA Mariner 2 77 -3 1097 259 121 38 chr4 147792409 147792478 -54535869 - L2 LINE L2 -703 2610 2548 787 152 174 0 chr4 147792479 147792617 -54535730 + AluJb SINE Alu 135 296 -16 270 266 28 83 chr4 147792617 147792726 -54535621 - L2 LINE L2 -761 2553 2451 3544 159 65 29 chr4 147792729 147793237 -54535110 + L1M4c LINE L1 20 559 -5825 2054 122 16 7 chr4 147793237 147793541 -54534806 + AluSx SINE Alu 1 307 -5 3544 159 65 29 chr4 147793541 147793699 -54534648 + L1M4c LINE L1 559 710 -5674 4257 266 58 30 chr4 147793712 147795257 -54533090 + L1P5 LINE L1 3 1591 -5272 * 8368 181 17 11 chr4 147795246 147797214 -54531133 + L1P5 LINE L1 4327 6302 -568 2051 118 0 14 chr4 147797214 147797510 -54530837 - AluSg SINE Alu -18 292 1 2499 81 3 0 chr4 147797515 147797822 -54530525 - AluSp SINE Alu -5 308 1 390 225 0 0 chr4 147797851 147797931 -54530416 - L1MB8 LINE L1 -205 5973 5894 1230 151 0 112 chr4 147797954 147798213 -54530134 - AluJb SINE Alu -82 230 1 1688 206 32 32 chr4 147798216 147798623 -54529724 - L1MB8 LINE L1 -272 5906 5500 285 149 0 0 chr4 147798623 147798670 -54529677 + MLT1F LTR MaLR 496 542 0 956 266 123 54 chr4 147798772 147799068 -54529279 + L1M4 LINE L1 4060 4334 -1812 2155 124 0 13 chr4 147799068 147799374 -54528973 + AluSg SINE Alu 3 304 -6 956 266 123 54 chr4 147799374 147799648 -54528699 + L1M4 LINE L1 4334 4588 -1558 1676 152 43 43 chr4 147799648 147799792 -54528555 + AluJb SINE Alu 1 144 -168 2069 96 0 83 chr4 147799792 147800116 -54528231 + AluSq SINE Alu 1 297 -16 1676 152 43 43 chr4 147800116 147800273 -54528074 + AluJb SINE Alu 143 302 -10 956 266 123 54 chr4 147800273 147800475 -54527872 + L1M4 LINE L1 4588 4775 -1371 2147 78 7 14 chr4 147800475 147800836 -54527511 + AluY SINE Alu 1 359 0 956 266 123 54 chr4 147800836 147801156 -54527191 + L1M4 LINE L1 4775 5231 -915 753 237 160 5 chr4 147801736 147801955 -54526392 + L1ME1 LINE L1 5909 6161 -5 1777 167 14 0 chr4 147802071 147802352 -54525995 - AluJb SINE Alu -17 295 11 21 0 0 0 chr4 147802457 147802478 -54525869 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr4 147802555 147802597 -54525750 + AT_rich Low_complexity Low_complexity 1 42 0 591 125 0 21 chr4 147802624 147802720 -54525627 - AluSg/x SINE Alu -9 301 208 192 207 52 17 chr4 147802767 147802825 -54525522 - MIR SINE MIR -69 193 134 1638 148 15 97 chr4 147802868 147802884 -54525463 + MER4A LTR ERV1 3 19 -446 1915 156 0 13 chr4 147802884 147803212 -54525135 + AluJb SINE Alu 1 312 0 1638 148 15 97 chr4 147803212 147803869 -54524478 + MER4A LTR ERV1 19 465 0 221 381 12 0 chr4 147803960 147804044 -54524303 + MIR SINE MIR 59 143 -119 2597 123 151 104 chr4 147804183 147804817 -54523530 + MER4A LTR ERV1 1 664 0 1625 216 0 0 chr4 147804878 147805175 -54523172 + 7SLRNA srpRNA srpRNA 2 298 -22 734 191 8 8 chr4 147805195 147805321 -54523026 + FLAM_C SINE Alu 2 127 -16 1129 64 0 0 chr4 147805927 147806068 -54522279 - AluY SINE Alu -32 279 139 912 158 7 14 chr4 147806278 147806424 -54521923 + AluJo SINE Alu 1 145 -167 1677 134 0 76 chr4 147806425 147806762 -54521585 + AluY SINE Alu 1 311 0 238 329 0 0 chr4 147806782 147806852 -54521495 - L1MEd LINE L1 -6048 71 2 1052 226 56 41 chr4 147806922 147807241 -54521106 + MLT1A2 LTR MaLR 1 324 -50 2303 117 0 0 chr4 147807271 147807580 -54520767 - AluSx SINE Alu -3 309 1 2195 98 13 10 chr4 147807665 147807970 -54520377 - AluSc SINE Alu -3 306 1 21 0 0 0 chr4 147807970 147807991 -54520356 + AT_rich Low_complexity Low_complexity 1 21 0 2264 108 0 10 chr4 147808021 147808328 -54520019 - AluSg SINE Alu -6 304 1 222 296 101 38 chr4 147808467 147808626 -54519721 - L2 LINE L2 -351 2963 2795 1777 133 53 14 chr4 147808653 147808938 -54519409 - AluSq SINE Alu -17 296 1 443 186 72 31 chr4 147808970 147809067 -54519280 + AluJb SINE Alu 6 106 -206 * 833 191 0 0 chr4 147809065 147809206 -54519141 + AluSg/x SINE Alu 160 300 -10 717 12 0 0 chr4 147809219 147809301 -54519046 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 318 257 74 31 chr4 147809354 147809603 -54518744 + LTR16B LTR ERVL 167 454 -10 849 216 48 24 chr4 147809657 147809865 -54518482 + MLT1A1 LTR MaLR 1 213 -152 663 155 21 0 chr4 147809869 147809966 -54518381 + AluJb SINE Alu 6 104 -208 500 156 33 44 chr4 147809959 147810049 -54518298 - AluY SINE Alu -221 90 2 * 870 175 123 0 chr4 147810076 147810230 -54518117 + AluJb SINE Alu 129 301 -11 2237 112 6 10 chr4 147810230 147810542 -54517805 + AluSx SINE Alu 1 311 -1 2170 91 0 0 chr4 147810718 147811058 -54517289 + AluSx SINE Alu 1 281 -31 2289 243 32 40 chr4 147812169 147812444 -54515903 + Zaphod DNA AcHobo 1 277 -3754 2381 89 7 0 chr4 147812444 147812746 -54515601 + AluSc SINE Alu 1 304 -5 2289 243 32 40 chr4 147812746 147813095 -54515252 + Zaphod DNA AcHobo 277 620 -3411 2512 232 7 15 chr4 147813095 147813633 -54514714 - MLT1F LTR MaLR 0 542 9 1877 140 46 107 chr4 147813633 147814198 -54514149 - MLT2A2 LTR ERVL 0 554 4 975 191 0 18 chr4 147814257 147814425 -54513922 - FAM SINE Alu -10 165 1 896 178 12 6 chr4 147814469 147814632 -54513715 + AluJo SINE Alu 124 287 -25 471 95 0 0 chr4 147814731 147814794 -54513553 - AluJ/FLAM SINE Alu -234 78 16 1050 194 80 70 chr4 147814931 147814981 -54513366 + Zaphod DNA AcHobo 3601 3649 -382 1782 168 0 26 chr4 147814981 147815117 -54513230 + AluJo SINE Alu 1 139 -173 2430 82 0 3 chr4 147815117 147815410 -54512937 + AluSg SINE Alu 1 292 -18 1782 168 0 26 chr4 147815410 147815582 -54512765 + AluJo SINE Alu 139 301 -11 1050 194 80 70 chr4 147815582 147815749 -54512598 + Zaphod DNA AcHobo 3649 3813 -218 2066 83 83 0 chr4 147815749 147816025 -54512322 + AluSq SINE Alu 1 299 -14 1050 194 80 70 chr4 147816025 147816192 -54512155 + Zaphod DNA AcHobo 3813 3990 -41 2374 77 7 13 chr4 147816194 147816493 -54511854 - AluSg SINE Alu -12 298 2 1707 183 10 7 chr4 147817334 147817634 -54510713 - AluJo SINE Alu -11 301 1 22 35 0 0 chr4 147817673 147817702 -54510645 + AT_rich Low_complexity Low_complexity 1 29 0 336 93 128 70 chr4 147817859 147817945 -54510402 - MER31-int LTR ERV1 -421 4459 3730 250 157 20 20 chr4 147818028 147818079 -54510268 - MER31-int LTR ERV1 -2874 3724 3674 437 207 83 30 chr4 147818135 147818236 -54510111 - MER31-int LTR ERV1 -3117 3481 3366 2008 141 0 3 chr4 147818236 147818533 -54509814 - AluSx SINE Alu -16 296 1 437 207 83 30 chr4 147818533 147818600 -54509747 - MER31-int LTR ERV1 -3232 3366 3304 318 95 0 0 chr4 147818605 147818647 -54509700 + (TTCC)n Simple_repeat Simple_repeat 4 45 0 637 218 12 0 chr4 147818647 147818817 -54509530 + CT-rich Low_complexity Low_complexity 1 172 0 285 79 11 90 chr4 147818846 147818935 -54509412 + (TTTCC)n Simple_repeat Simple_repeat 2 83 0 189 147 0 0 chr4 147818939 147818973 -54509374 + (TCCC)n Simple_repeat Simple_repeat 2 35 0 937 197 66 108 chr4 147818991 147819016 -54509331 - MER31-int LTR ERV1 -504 4376 4352 1450 188 0 0 chr4 147819016 147819255 -54509092 - AluJb SINE Alu -73 239 1 937 197 66 108 chr4 147819255 147819777 -54508570 - MER31-int LTR ERV1 -528 4352 3810 1533 190 21 17 chr4 147819777 147820067 -54508280 - AluJo SINE Alu -16 296 6 937 197 66 108 chr4 147820067 147820109 -54508238 - MER31-int LTR ERV1 -1070 3810 1546 413 217 84 35 chr4 147820101 147820323 -54508024 - MER31-int LTR ERV1 -2377 2494 1726 * 1984 102 3 51 chr4 147820324 147820650 -54507697 - AluSg SINE Alu 0 312 1 602 105 0 21 chr4 147820655 147820750 -54507597 - AluSp SINE Alu 0 313 221 1253 83 0 18 chr4 147820750 147820783 -54507564 - AluSp SINE Alu -147 166 134 2113 96 39 0 chr4 147820783 147821063 -54507284 - AluY SINE Alu -20 291 1 1253 83 0 18 chr4 147821063 147821198 -54507149 - AluSp SINE Alu -179 134 1 2431 183 27 77 chr4 147821220 147821896 -54506451 - MER31-int LTR ERV1 -2495 2376 1735 2087 148 0 0 chr4 147821896 147822206 -54506141 - AluSx SINE Alu -2 310 1 211 260 39 39 chr4 147822472 147822549 -54505798 - MIR SINE MIR -91 171 95 738 120 0 0 chr4 147822549 147822649 -54505698 + MER68 LTR ERV1 1 100 -462 1476 77 11 0 chr4 147822650 147822831 -54505516 - AluY SINE Alu -128 183 1 5244 164 50 28 chr4 147822831 147824045 -54504302 + HERVH LTR ERV1 3951 5108 -1421 2449 86 37 123 chr4 147824027 147824514 -54503833 + HERVH LTR ERV1 7269 7713 0 * 2183 95 20 8 chr4 147824514 147824908 -54503439 + LTR7 LTR ERV1 1 443 -7 450 74 0 0 chr4 147824944 147824998 -54503349 - tRNA-Arg-CGC tRNA tRNA -22 54 1 1801 159 3 17 chr4 147825185 147825480 -54502867 + AluJo SINE Alu 3 293 -19 1753 183 0 67 chr4 147825559 147825915 -54502432 + MER7A DNA MER2_type 17 346 0 2000 120 22 0 chr4 147825953 147826273 -54502074 + AluSx SINE Alu 1 326 0 2459 46 7 13 chr4 147826408 147826712 -54501635 + AluY SINE Alu 1 302 -9 2299 85 7 0 chr4 147826715 147827036 -54501311 + AluSg SINE Alu 1 323 0 222 388 8 33 chr4 147827373 147827494 -54500853 - MIR SINE MIR -133 129 12 2567 69 3 0 chr4 147827494 147827800 -54500547 - AluSp SINE Alu -4 309 3 1109 210 38 41 chr4 147828245 147828559 -54499788 + L1MB8 LINE L1 5866 6178 0 2403 79 10 3 chr4 147828569 147828873 -54499474 + AluSq SINE Alu 2 307 -6 23 54 0 0 chr4 147829052 147829089 -54499258 + AT_rich Low_complexity Low_complexity 1 37 0 1252 120 38 0 chr4 147829221 147829430 -54498917 - L1MA5A LINE L1 -4 6293 6077 581 118 140 0 chr4 147829431 147829524 -54498823 - U6 snRNA snRNA -1 106 1 2031 141 20 0 chr4 147829615 147829912 -54498435 - AluJb SINE Alu -9 303 1 2468 74 0 7 chr4 147829949 147830259 -54498088 - AluSc SINE Alu -1 308 1 1775 129 61 4 chr4 147830321 147830601 -54497746 - AluSx SINE Alu -12 300 5 2160 144 0 3 chr4 147830731 147831044 -54497303 - AluJb SINE Alu 0 312 1 2537 68 0 0 chr4 147831568 147831875 -54496472 + AluY SINE Alu 2 308 -3 2145 110 122 0 chr4 147831879 147832206 -54496141 - MER51B LTR ERV1 -10 367 1 2468 139 0 0 chr4 147832208 147832554 -54495793 - MER51B-int LTR ERV1 -1 7815 7470 579 214 61 0 chr4 147832554 147832685 -54495662 - LTR54B LTR ERV1 -357 141 3 9260 113 81 18 chr4 147832685 147833256 -54495091 - MER51B-int LTR ERV1 -390 7147 6614 2197 103 0 55 chr4 147833256 147833586 -54494761 - AluSx SINE Alu 0 312 1 9260 113 81 18 chr4 147833586 147834451 -54493896 - MER51B-int LTR ERV1 -923 6614 5620 613 131 20 0 chr4 147834441 147834540 -54493807 - MER51B-int LTR ERV1 -2188 5349 5249 * 1744 114 50 1 chr4 147834539 147834912 -54493435 - MER41-int LTR ERV1 -2572 2645 2210 * 2463 130 130 38 chr4 147834893 147834961 -54493386 - MER41-int LTR ERV1 -2581 3365 3305 2633 24 3 3 chr4 147834961 147835255 -54493092 - AluY SINE Alu -17 294 1 2463 130 130 38 chr4 147835255 147835686 -54492661 - MER41-int LTR ERV1 -2641 3305 2820 * 8474 93 71 7 chr4 147835659 147836223 -54492124 - MER41-int LTR ERV1 -4490 3326 2799 2334 105 0 19 chr4 147836223 147836538 -54491809 + AluSg SINE Alu 1 309 -1 8474 93 71 7 chr4 147836538 147836847 -54491500 - MER41-int LTR ERV1 -5017 2799 2511 2225 101 17 7 chr4 147836847 147837145 -54491202 + AluSq SINE Alu 1 301 -12 8474 93 71 7 chr4 147837145 147837632 -54490715 - MER41-int LTR ERV1 -5305 2511 1878 3241 102 147 14 chr4 147837632 147838191 -54490156 - LTR10E LTR ERV1 0 633 1 434 57 9 142 chr4 147838191 147838225 -54490122 - MER41-int LTR ERV1 -5934 1882 1845 2255 98 0 0 chr4 147838225 147838512 -54489835 + AluSc SINE Alu 1 287 -22 434 57 9 142 chr4 147838512 147838583 -54489764 - MER41-int LTR ERV1 -5971 1845 1791 677 166 46 26 chr4 147838587 147838765 -54489582 - MER4A LTR ERV1 -149 515 276 4857 138 39 35 chr4 147838823 147838951 -54489396 - MER51B-int LTR ERV1 -3462 2124 1998 2250 63 3 11 chr4 147838951 147839286 -54489061 - AluY SINE Alu 0 333 1 4857 138 39 35 chr4 147839286 147840245 -54488102 - MER51B-int LTR ERV1 -3588 1998 223 1480 149 12 12 chr4 147840246 147840495 -54487852 - MER51B-int LTR ERV1 -7565 251 3 2196 111 106 0 chr4 147840495 147840836 -54487511 - MER51B LTR ERV1 0 377 1 293 228 163 11 chr4 147840878 147840970 -54487377 + L2 LINE L2 3208 3313 0 2182 93 21 3 chr4 147841494 147841783 -54486564 + AluSg SINE Alu 1 294 -16 409 143 220 11 chr4 147842126 147842217 -54486130 - FRAM SINE Alu -13 163 54 564 58 0 0 chr4 147842230 147842299 -54486048 - MER51-int LTR ERV1 -6652 1164 1096 306 188 0 0 chr4 147842303 147842351 -54485996 - Alu SINE Alu -252 48 1 1491 170 44 4 chr4 147842374 147842666 -54485681 + AluJo SINE Alu 1 303 0 184 256 61 37 chr4 147842778 147842860 -54485487 + L2 LINE L2 2970 3053 -219 2473 77 3 0 chr4 147843081 147843378 -54484969 + AluSq SINE Alu 1 298 -15 1758 197 0 0 chr4 147844241 147844551 -54483796 + AluJo SINE Alu 1 310 -2 2358 84 0 13 chr4 147845215 147845525 -54482822 + AluSx SINE Alu 1 306 -6 1369 83 6 11 chr4 147845783 147845963 -54482384 - AluSg SINE Alu -131 179 1 773 133 42 0 chr4 147846051 147846171 -54482176 - FLAM_C SINE Alu -10 133 9 1717 156 59 10 chr4 147846188 147846476 -54481871 - AluJb SINE Alu -2 310 9 2247 122 3 0 chr4 147846481 147846792 -54481555 - AluSx SINE Alu 0 312 1 1790 152 92 11 chr4 147847080 147847449 -54480898 + L1MC2 LINE L1 5944 6342 -2 2102 130 3 10 chr4 147847461 147847761 -54480586 - AluSx SINE Alu -14 298 1 223 170 57 0 chr4 147847802 147847855 -54480492 + MIR SINE MIR 136 191 -71 22 0 0 0 chr4 147847907 147847929 -54480418 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 147848735 147848757 -54479590 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 147849006 147849034 -54479313 + AT_rich Low_complexity Low_complexity 1 28 0 479 320 33 0 chr4 147849165 147849346 -54479001 - L2 LINE L2 0 3313 3127 1913 121 72 35 chr4 147849512 147849547 -54478800 - MER46B DNA MER2_type -2495 236 204 1727 143 51 24 chr4 147849547 147849841 -54478506 + AluJb SINE Alu 5 306 -6 1913 121 72 35 chr4 147849841 147850153 -54478194 - MER46B DNA MER2_type -2527 204 1 378 292 128 30 chr4 147850575 147850911 -54477436 + L1ME4a LINE L1 5748 6116 -5 2382 85 3 0 chr4 147850924 147851218 -54477129 + AluSp SINE Alu 1 295 -18 219 114 0 0 chr4 147851556 147851591 -54476756 + (TG)n Simple_repeat Simple_repeat 1 35 0 218 208 28 69 chr4 147852211 147852283 -54476064 - MIR SINE MIR -11 251 183 318 186 386 35 chr4 147852693 147852838 -54475509 - MIR SINE MIR -28 234 39 2319 97 0 3 chr4 147853772 147854081 -54474266 + AluSx SINE Alu 1 308 -4 212 0 36 0 chr4 147854086 147854114 -54474233 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 281 210 37 12 chr4 147854304 147854385 -54473962 - MIR SINE MIR -50 212 130 1248 153 9 31 chr4 147854663 147854885 -54473462 + AluJo SINE Alu 92 308 -4 439 202 0 79 chr4 147854899 147855013 -54473334 + FLAM_C SINE Alu 29 133 -10 2280 105 3 0 chr4 147856040 147856335 -54472012 - AluSg SINE Alu -12 298 3 387 198 45 54 chr4 147856445 147856556 -54471791 - MLT1C LTR MaLR -36 431 322 3509 99 32 2 chr4 147856556 147857051 -54471296 + MER49 LTR ERV1 1 510 -413 1085 158 158 40 chr4 147857054 147857276 -54471071 + AluJo SINE Alu 6 253 -59 2836 134 7 9 chr4 147857305 147857494 -54470853 + MER49 LTR ERV1 498 686 -237 1919 144 127 43 chr4 147857494 147857846 -54470501 + MSTA LTR MaLR 1 391 -37 2190 119 10 0 chr4 147857846 147858140 -54470207 - AluSp SINE Alu -16 297 1 1919 144 127 43 chr4 147858140 147858182 -54470165 + MSTA LTR MaLR 391 428 0 2836 134 7 9 chr4 147858182 147858417 -54469930 + MER49 LTR ERV1 686 921 -2 996 205 169 7 chr4 147858418 147858696 -54469651 - MLT1C LTR MaLR -143 324 2 1845 106 0 127 chr4 147858863 147859194 -54469153 - AluSg SINE Alu -21 289 1 2131 127 0 0 chr4 147859516 147859808 -54468539 - AluSx SINE Alu -20 292 1 289 190 103 0 chr4 147859912 147859970 -54468377 - MER3 DNA MER1_type -2 207 144 662 171 0 16 chr4 147859974 147860097 -54468250 + FLAM_C SINE Alu 6 126 -17 2154 117 14 0 chr4 147860141 147860432 -54467915 + AluSx SINE Alu 1 295 -17 792 148 97 0 chr4 147860432 147860576 -54467771 - MER3 DNA MER1_type -47 115 1 2447 73 3 0 chr4 147860671 147860972 -54467375 + AluY SINE Alu 1 302 -9 883 206 213 29 chr4 147861210 147861525 -54466822 - MLT1D LTR MaLR -2 503 131 1022 211 10 0 chr4 147861602 147861810 -54466537 + AluJo SINE Alu 11 220 -92 353 113 0 0 chr4 147861810 147861863 -54466484 + AluY SINE Alu 84 136 -165 2073 47 127 7 chr4 147861864 147862139 -54466208 + AluY SINE Alu 4 311 0 2418 81 0 3 chr4 147862455 147862753 -54465594 - AluSp SINE Alu -16 297 1 25 31 0 0 chr4 147863194 147863226 -54465121 + AT_rich Low_complexity Low_complexity 1 32 0 679 150 108 17 chr4 147863299 147863419 -54464928 - FLAM_C SINE Alu 0 133 3 265 175 8 33 chr4 147863693 147863782 -54464565 + (TA)n Simple_repeat Simple_repeat 2 89 -29 1772 141 0 49 chr4 147863782 147864088 -54464259 - AluSx SINE Alu -21 291 1 265 175 8 33 chr4 147864088 147864118 -54464229 + (TA)n Simple_repeat Simple_repeat 89 118 0 180 0 0 0 chr4 147864493 147864513 -54463834 + (CAAAC)n Simple_repeat Simple_repeat 5 24 0 2341 72 7 26 chr4 147864535 147864841 -54463506 - AluY SINE Alu -11 300 1 2199 86 7 7 chr4 147865582 147865872 -54462475 - AluSq SINE Alu -23 290 1 2332 77 0 0 chr4 147866478 147866776 -54461571 - AluY SINE Alu -1 310 13 2320 91 13 0 chr4 147866788 147867096 -54461251 - AluSp SINE Alu -1 312 1 2374 96 3 10 chr4 147867457 147867769 -54460578 - AluSx SINE Alu -2 310 1 629 155 0 0 chr4 147867769 147867866 -54460481 - L1MC/D LINE L1 -621 5738 5642 1002 143 6 24 chr4 147867977 147868145 -54460202 - L1PA15 LINE L1 -8 6157 5993 27 0 0 0 chr4 147868457 147868484 -54459863 + AT_rich Low_complexity Low_complexity 1 27 0 184 246 15 0 chr4 147868937 147869002 -54459345 + CT-rich Low_complexity Low_complexity 1 66 0 1591 191 0 14 chr4 147869002 147869285 -54459062 - AluJo SINE Alu -33 279 1 437 252 35 21 chr4 147869488 147869631 -54458716 - MIR SINE MIR -44 218 74 284 328 33 0 chr4 147869901 147870023 -54458324 - L1MC4a LINE L1 -1893 5915 5790 993 247 113 50 chr4 147871216 147871737 -54456610 - L2 LINE L2 0 3313 2752 649 215 285 52 chr4 147871739 147872083 -54456264 + LTR16A1 LTR ERVL 1 424 -33 262 268 98 46 chr4 147872234 147872387 -54455960 - MLT1L LTR MaLR -27 588 428 1801 139 39 7 chr4 147872398 147872679 -54455668 + AluJb SINE Alu 1 290 -22 2316 87 3 10 chr4 147872789 147873100 -54455247 + AluSc SINE Alu 1 309 0 1258 214 121 79 chr4 147873146 147873507 -54454840 - L1MC4 LINE L1 -1 8041 7697 2314 98 3 0 chr4 147873507 147873802 -54454545 + AluSx SINE Alu 1 296 -16 1258 214 121 79 chr4 147873802 147874039 -54454308 - L1MC4 LINE L1 -345 7697 7471 1827 146 45 7 chr4 147874039 147874327 -54454020 - AluJo SINE Alu -13 299 1 1258 214 121 79 chr4 147874327 147874483 -54453864 - L1MC4 LINE L1 -571 7471 7136 202 94 16 62 chr4 147874548 147874612 -54453735 + (TA)n Simple_repeat Simple_repeat 2 62 0 211 140 0 60 chr4 147874667 147874717 -54453630 + (TA)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr4 147874768 147874791 -54453556 + AT_rich Low_complexity Low_complexity 1 23 0 1825 233 54 36 chr4 147874793 147875346 -54453001 - L1MC4 LINE L1 -1853 5955 5393 2523 62 0 3 chr4 147875347 147875652 -54452695 + AluY SINE Alu 1 304 -7 1884 146 4 4 chr4 147875663 147875944 -54452403 + AluJb SINE Alu 1 281 -31 324 0 0 0 chr4 147875944 147875980 -54452367 + (CA)n Simple_repeat Simple_repeat 1 36 0 2189 104 0 36 chr4 147876009 147876175 -54452172 - AluY SINE Alu -13 298 147 2542 40 3 3 chr4 147876175 147876475 -54451872 - AluY SINE Alu -11 300 1 2189 104 0 36 chr4 147876475 147876617 -54451730 - AluY SINE Alu -164 147 1 853 150 0 0 chr4 147876638 147876765 -54451582 - FLAM_C SINE Alu -4 129 3 285 317 16 14 chr4 147876794 147877088 -54451259 - L1MC4 LINE L1 -860 5286 5098 788 186 0 0 chr4 147877168 147877286 -54451061 + FLAM_C SINE Alu 1 118 -15 33 25 0 0 chr4 147877291 147877331 -54451016 + AT_rich Low_complexity Low_complexity 1 40 0 1443 231 116 29 chr4 147877333 147877776 -54450571 + MLT1H LTR MaLR 65 501 -4 2292 109 0 25 chr4 147877791 147878111 -54450236 + AluSq SINE Alu 1 312 -1 189 0 0 0 chr4 147878166 147878187 -54450160 + (T)n Simple_repeat Simple_repeat 1 21 0 1592 165 0 0 chr4 147878394 147878656 -54449691 + AluJo SINE Alu 46 307 0 951 164 6 28 chr4 147878799 147878976 -54449371 - AluSg/x SINE Alu -10 302 130 1911 144 10 0 chr4 147879077 147879376 -54448971 + AluSx SINE Alu 3 304 -8 1574 190 14 4 chr4 147879531 147879835 -54448512 + AluJo SINE Alu 1 307 0 768 108 29 0 chr4 147880354 147880456 -54447891 + U6 snRNA snRNA 3 107 0 1717 106 126 0 chr4 147881122 147881368 -54446979 + AluSq SINE Alu 18 294 -19 356 344 47 58 chr4 147881557 147881881 -54446466 + L2 LINE L2 2895 3267 -5 1486 82 0 5 chr4 147882058 147882252 -54446095 + AluSg/x SINE Alu 112 304 -6 1872 167 3 20 chr4 147882392 147882698 -54445649 - AluJb SINE Alu -11 301 1 227 31 31 0 chr4 147882789 147882821 -54445526 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 428 305 121 14 chr4 147884044 147884185 -54444162 - MIR3 SINE MIR -21 187 32 23 0 0 0 chr4 147884333 147884356 -54443991 + AT_rich Low_complexity Low_complexity 1 23 0 2265 106 13 3 chr4 147884358 147884659 -54443688 + AluSq SINE Alu 1 304 -9 619 269 18 18 chr4 147884670 147884837 -54443510 + Zaphod DNA AcHobo 277 443 -3588 2245 93 7 0 chr4 147884964 147885254 -54443093 - AluSq SINE Alu -21 292 1 255 195 102 59 chr4 147885274 147885392 -54442955 - L1MC4 LINE L1 0 8042 7920 2594 62 0 0 chr4 147885515 147885820 -54442527 - AluY SINE Alu -6 305 1 305 297 47 20 chr4 147885880 147886028 -54442319 - L1ME3A LINE L1 -223 5947 5796 558 117 21 43 chr4 147886177 147886271 -54442076 + AluSg/x SINE Alu 209 300 -12 649 359 61 33 chr4 147886968 147887024 -54441323 - L1ME3A LINE L1 -376 5794 5741 2371 68 10 0 chr4 147887024 147887318 -54441029 - AluSp SINE Alu -16 297 1 649 359 61 33 chr4 147887318 147888311 -54440036 - L1ME3A LINE L1 -429 5741 4715 2261 109 3 0 chr4 147888344 147888655 -54439692 - AluSp SINE Alu -1 312 1 400 155 28 0 chr4 147889055 147889126 -54439221 - LTR45 LTR ERV1 -63 462 390 315 0 0 0 chr4 147889694 147889729 -54438618 + (CA)n Simple_repeat Simple_repeat 2 36 0 1814 116 58 0 chr4 147889745 147890003 -54438344 - AluSx SINE Alu -39 273 1 389 224 0 0 chr4 147890026 147890102 -54438245 - MER116 DNA Mariner 0 80 5 320 353 42 57 chr4 147890139 147890435 -54437912 - L2 LINE L2 -5 3267 2924 254 292 39 46 chr4 147890712 147890842 -54437505 - L2 LINE L2 -74 3239 3111 2447 67 0 3 chr4 147890880 147891177 -54437170 - AluY SINE Alu -14 297 2 339 162 265 0 chr4 147891274 147891342 -54437005 + AluSg SINE Alu 12 97 -203 25 0 0 28 chr4 147891847 147891866 -54436481 + AT_rich Low_complexity Low_complexity 1 20 -15 2156 99 17 0 chr4 147891866 147892160 -54436187 - AluSq SINE Alu -14 299 1 25 0 0 28 chr4 147892160 147892176 -54436171 + AT_rich Low_complexity Low_complexity 20 35 0 23 33 0 0 chr4 147892724 147892754 -54435593 + AT_rich Low_complexity Low_complexity 1 30 0 257 222 62 25 chr4 147892878 147892959 -54435388 + MIR SINE MIR 125 208 -54 2378 96 0 6 chr4 147892971 147893283 -54435064 - AluY SINE Alu -1 310 1 2344 58 10 3 chr4 147893496 147893791 -54434556 + AluY SINE Alu 2 298 -13 251 275 142 25 chr4 147894249 147894369 -54433978 - MIR SINE MIR -56 206 73 268 242 112 96 chr4 147895156 147895334 -54433013 - MIR SINE MIR 0 262 82 227 235 127 25 chr4 147895428 147895507 -54432840 - MIR SINE MIR -111 97 20 415 213 150 31 chr4 147895561 147895688 -54432659 + MIR SINE MIR 52 193 -69 1463 213 3 19 chr4 147896821 147897131 -54431216 + AluJb SINE Alu 1 305 -7 2496 59 7 3 chr4 147897197 147897500 -54430847 + AluSp SINE Alu 1 304 -9 791 183 8 0 chr4 147897513 147897644 -54430703 + FLAM_C SINE Alu 2 133 -10 1641 197 7 7 chr4 147897704 147898013 -54430334 - AluJo SINE Alu -3 309 1 2364 89 0 0 chr4 147898017 147898308 -54430039 - AluSg SINE Alu -19 291 1 236 265 231 0 chr4 147902395 147902542 -54425805 - L1MC4 LINE L1 0 8042 7862 1631 128 0 0 chr4 147902554 147902780 -54425567 + AluSx SINE Alu 1 226 -86 1951 168 0 0 chr4 147902896 147903200 -54425147 - AluSx SINE Alu -8 304 1 1026 143 0 50 chr4 147903212 147903373 -54424974 - AluSg/x SINE Alu -26 286 134 431 289 206 4 chr4 147903374 147903627 -54424720 + L2 LINE L2 3010 3313 0 281 330 0 22 chr4 147903950 147904041 -54424306 + MER5B DNA MER1_type 89 177 -1 23 0 0 0 chr4 147904067 147904090 -54424257 + AT_rich Low_complexity Low_complexity 1 23 0 920 199 56 0 chr4 147904099 147904260 -54424087 + FAM SINE Alu 1 170 -5 1650 160 22 56 chr4 147904866 147905185 -54423162 + AluJb SINE Alu 1 308 -4 1374 220 215 14 chr4 147905424 147905838 -54422509 - MLT1F1 LTR MaLR -7 560 64 1901 161 0 10 chr4 147905914 147906219 -54422128 - AluJo SINE Alu -10 302 1 322 301 106 0 chr4 147906220 147906333 -54422014 - MLT1F1-int LTR MaLR -27 1344 1220 435 313 42 10 chr4 147907248 147907440 -54420907 - MLT1F1-int LTR MaLR -1173 198 1 766 223 0 18 chr4 147907440 147907606 -54420741 - MLT1F1 LTR MaLR 0 567 405 772 164 9 0 chr4 147907606 147907722 -54420625 + FLAM_C SINE Alu 2 118 -25 22 0 0 0 chr4 147907722 147907744 -54420603 + AT_rich Low_complexity Low_complexity 1 22 0 808 250 142 21 chr4 147907751 147908094 -54420253 - MLT1F1 LTR MaLR -169 373 1 2119 104 42 0 chr4 147908349 147908636 -54419711 + AluY SINE Alu 1 299 -12 1972 118 33 15 chr4 147908636 147908966 -54419381 + L1M4c LINE L1 1617 1952 -4432 2355 165 94 25 chr4 147909416 147909889 -54418458 + L1M4c LINE L1 1843 2282 -4100 1530 176 137 13 chr4 147909889 147910196 -54418151 + MER7A DNA MER2_type 4 346 0 2355 165 94 25 chr4 147910196 147910392 -54417955 + L1M4c LINE L1 2282 2463 -3919 1784 171 3 0 chr4 147910392 147910690 -54417657 + AluJo SINE Alu 5 303 -9 2355 165 94 25 chr4 147910690 147911149 -54417198 + L1M4c LINE L1 2463 3145 -3237 2971 221 34 56 chr4 147911477 147912390 -54415957 + L1M4c LINE L1 3132 4024 -2358 1581 153 90 25 chr4 147912393 147912479 -54415868 - MER6 DNA MER2_type -3 862 783 1553 181 72 0 chr4 147912479 147912755 -54415592 + AluJb SINE Alu 2 297 -15 1581 153 90 25 chr4 147912755 147913033 -54415314 - MER6 DNA MER2_type -82 783 474 1352 190 30 26 chr4 147913035 147913324 -54415023 + AluJb SINE Alu 17 306 0 2636 172 9 7 chr4 147913330 147913794 -54414553 + L1M1 LINE L1 16 480 -7085 2230 100 3 0 chr4 147913895 147914185 -54414162 - AluSx SINE Alu -21 291 1 1640 176 38 0 chr4 147914224 147914537 -54413810 + MER2 DNA MER2_type 21 345 0 555 242 67 90 chr4 147914538 147914898 -54413449 - HAL1 LINE L1 -891 1616 1268 1526 166 12 80 chr4 147914898 147915224 -54413123 + AluJo SINE Alu 1 304 -8 555 242 67 90 chr4 147915224 147915339 -54413008 - HAL1 LINE L1 -1239 1268 1152 688 186 0 8 chr4 147916341 147916459 -54411888 + FLAM_C SINE Alu 2 118 -25 2236 117 10 0 chr4 147916668 147916966 -54411381 - AluSx SINE Alu -11 301 1 2109 125 3 0 chr4 147917067 147917362 -54410985 - AluSx SINE Alu -16 296 1 32 0 0 0 chr4 147918089 147918121 -54410226 + AT_rich Low_complexity Low_complexity 1 32 0 319 191 0 36 chr4 147918517 147918601 -54409746 + MLT1A1 LTR MaLR 1 81 -284 396 234 165 80 chr4 147918644 147918832 -54409515 + MIR SINE MIR 2 205 -57 193 316 13 13 chr4 147919037 147919113 -54409234 - L2 LINE L2 -54 3259 3184 2137 138 0 0 chr4 147919740 147920051 -54408296 - AluSq SINE Alu -2 311 1 1937 166 0 0 chr4 147920119 147920414 -54407933 - AluSx SINE Alu -17 295 1 1719 169 10 17 chr4 147920518 147920808 -54407539 + AluJo SINE Alu 1 288 -24 1902 91 0 8 chr4 147920820 147921094 -54407253 + AluSc SINE Alu 49 320 0 1551 199 7 3 chr4 147921343 147921640 -54406707 + AluJo SINE Alu 1 298 -14 417 299 135 10 chr4 147921856 147922063 -54406284 - MIR SINE MIR -28 234 2 27 62 0 0 chr4 147922445 147922493 -54405854 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr4 147922537 147922558 -54405789 + AT_rich Low_complexity Low_complexity 1 21 0 1688 92 5 0 chr4 147922617 147922835 -54405512 + AluY SINE Alu 1 219 -92 2234 107 0 0 chr4 147922943 147923233 -54405114 + AluSg SINE Alu 1 290 -20 583 266 93 80 chr4 147923279 147923607 -54404740 + HAL1 LINE L1 1850 2191 -316 2109 115 0 55 chr4 147923607 147923937 -54404410 + AluSx SINE Alu 1 312 0 583 266 93 80 chr4 147923937 147924221 -54404126 + HAL1 LINE L1 2191 2470 -37 446 148 273 0 chr4 147924558 147924646 -54403701 - AluJb SINE Alu -27 285 174 227 257 58 99 chr4 147924658 147924829 -54403518 + L2 LINE L2 2327 2490 -824 215 291 58 12 chr4 147924853 147924939 -54403408 + L2 LINE L2 2606 2695 -619 577 323 99 33 chr4 147925262 147926040 -54402307 + L1MEc LINE L1 36 864 -5532 391 225 123 22 chr4 147926049 147926187 -54402160 + L1MEc LINE L1 902 1053 -5343 2017 139 0 54 chr4 147926190 147926506 -54401841 + AluSx SINE Alu 1 299 -13 2408 91 0 0 chr4 147926506 147926813 -54401534 + AluSc SINE Alu 1 307 -2 377 213 58 113 chr4 147926814 147926864 -54401483 + L1MEc LINE L1 992 1043 -5172 2099 132 0 3 chr4 147926864 147927167 -54401180 + AluSx SINE Alu 1 302 -10 377 213 58 113 chr4 147927167 147927377 -54400970 + L1MEc LINE L1 1043 1194 -5021 1981 114 4 0 chr4 147927425 147927716 -54400631 + AluSx SINE Alu 19 310 0 2139 105 0 14 chr4 147927818 147928127 -54400220 + AluSx SINE Alu 1 305 0 1942 157 0 10 chr4 147928135 147928435 -54399912 + AluJo SINE Alu 1 297 -15 960 256 45 4 chr4 147928943 147929185 -54399162 - MIR SINE MIR 0 262 11 1483 171 87 7 chr4 147929447 147929722 -54398625 + AluJo SINE Alu 1 297 -15 311 317 101 32 chr4 147929871 147930042 -54398305 - MIR3 SINE MIR -72 190 9 702 81 10 0 chr4 147930623 147930722 -54397625 - AluS SINE Alu -212 100 1 1364 165 104 0 chr4 147931203 147931452 -54396895 + AluJb SINE Alu 14 288 -24 420 317 113 82 chr4 147931519 147931872 -54396475 + L1MDb LINE L1 35 398 -5998 1094 96 0 0 chr4 147931878 147932013 -54396334 + AluSq/x SINE Alu 1 135 -177 2205 127 0 6 chr4 147932013 147932328 -54396019 + AluSq SINE Alu 1 313 0 2078 130 3 0 chr4 147932381 147932674 -54395673 + AluSx SINE Alu 1 294 -18 2213 125 73 14 chr4 147932909 147933253 -54395094 - THE1B LTR MaLR 0 364 1 495 299 94 45 chr4 147933254 147933585 -54394762 + L1MEc LINE L1 656 1002 -5394 2416 70 0 38 chr4 147933589 147933904 -54394443 + AluY SINE Alu 1 303 -8 658 205 0 16 chr4 147933908 147934035 -54394312 + FLAM_C SINE Alu 1 125 -18 371 161 58 55 chr4 147934119 147934229 -54394118 + L1M4 LINE L1 3054 3165 -2981 235 222 0 42 chr4 147934274 147934346 -54394001 + L1P LINE L1 3179 3247 -2899 623 207 8 0 chr4 147934420 147934541 -54393806 + FLAM_C SINE Alu 1 122 -21 2279 109 0 0 chr4 147934550 147934861 -54393486 + AluSx SINE Alu 1 311 -1 254 283 184 9 chr4 147935045 147935360 -54392987 + L1MDb LINE L1 563 932 -5286 324 212 152 38 chr4 147935380 147935512 -54392835 + L1MDb LINE L1 1029 1175 -5043 1667 192 16 0 chr4 147935638 147935945 -54392402 + AluJb SINE Alu 1 312 0 1090 82 0 0 chr4 147935965 147936100 -54392247 + AluSg SINE Alu 1 135 -175 1809 117 0 19 chr4 147936100 147936364 -54391983 - AluSx SINE Alu -53 259 1 212 290 32 54 chr4 147936443 147936511 -54391836 - L3 LINE CR1 -350 1227 1160 2112 122 21 0 chr4 147936511 147936799 -54391548 - AluSx SINE Alu -18 294 1 212 290 32 54 chr4 147936799 147936823 -54391524 - L3 LINE CR1 -417 1160 1137 699 120 9 28 chr4 147936885 147936993 -54391354 - U6 snRNA snRNA -1 106 1 261 267 69 35 chr4 147937270 147937386 -54390961 - L3 LINE CR1 -490 1087 968 2243 94 3 0 chr4 147937731 147938029 -54390318 - AluSg SINE Alu -11 299 1 322 288 43 0 chr4 147939091 147939230 -54389117 + HAL1b LINE L1 490 634 -714 21 0 0 0 chr4 147939476 147939497 -54388850 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 147939566 147939589 -54388758 + AT_rich Low_complexity Low_complexity 1 23 0 1692 165 7 0 chr4 147939823 147940133 -54388214 - AluJb SINE Alu 0 312 1 630 51 0 0 chr4 147940217 147940295 -54388052 + AluY SINE Alu 209 286 -25 501 68 0 0 chr4 147940295 147940369 -54387978 + (CCTAA)n Simple_repeat Simple_repeat 2 75 0 2175 118 0 0 chr4 147940395 147940683 -54387664 + AluSc SINE Alu 1 288 -21 2119 93 27 10 chr4 147941534 147941834 -54386513 + AluSp SINE Alu 1 305 -8 1800 167 3 17 chr4 147942098 147942397 -54385950 - AluSx SINE Alu -16 296 2 2040 75 108 0 chr4 147942855 147943123 -54385224 - AluSc SINE Alu -12 297 1 2014 214 74 44 chr4 147943411 147944416 -54383931 - L1MC4 LINE L1 0 8042 6907 1153 251 131 49 chr4 147945858 147946014 -54382333 - L2 LINE L2 -1345 1969 1827 2374 65 0 3 chr4 147946014 147946306 -54382041 + AluY SINE Alu 1 291 -20 1153 251 131 49 chr4 147946306 147946698 -54381649 - L2 LINE L2 -1487 1827 1376 191 234 0 21 chr4 147946697 147946744 -54381603 - L2 LINE L2 -6 3307 3262 * 1810 102 113 0 chr4 147946930 147947196 -54381151 - AluSp SINE Alu -17 296 1 450 192 108 85 chr4 147947317 147947447 -54380900 - FLAM_A SINE Alu -9 133 1 833 193 104 20 chr4 147947499 147947701 -54380646 - MER20 DNA MER1_type 0 219 1 1865 150 0 37 chr4 147947730 147948030 -54380317 + AluJb SINE Alu 6 294 -18 686 268 35 44 chr4 147948055 147948126 -54380221 + MIR SINE MIR 37 107 -155 2830 10 0 0 chr4 147948126 147948436 -54379911 + AluYb8 SINE Alu 1 310 -8 686 268 35 44 chr4 147948436 147948547 -54379800 + MIR SINE MIR 107 219 -43 1994 127 17 13 chr4 147948547 147948846 -54379501 + AluJb SINE Alu 1 300 -12 686 268 35 44 chr4 147948846 147948890 -54379457 + MIR SINE MIR 219 262 0 21 0 0 0 chr4 147949802 147949823 -54378524 + AT_rich Low_complexity Low_complexity 1 21 0 2043 122 3 7 chr4 147950078 147950372 -54377975 + AluSx SINE Alu 1 293 -19 758 185 0 0 chr4 147950537 147950667 -54377680 + FLAM_C SINE Alu 2 131 -2 2321 108 0 0 chr4 147952488 147952784 -54375563 - AluSx SINE Alu -16 296 1 22 35 0 0 chr4 147952789 147952818 -54375529 + AT_rich Low_complexity Low_complexity 1 29 0 2412 98 0 0 chr4 147953038 147953343 -54375004 - AluSq SINE Alu -8 305 1 1847 173 0 10 chr4 147954664 147954970 -54373377 - AluJb SINE Alu -5 307 5 1319 213 38 69 chr4 147955005 147955264 -54373083 - L1MC5 LINE L1 -50 7911 7645 2092 107 10 17 chr4 147955264 147955553 -54372794 - AluSx SINE Alu -24 288 2 1319 213 38 69 chr4 147955553 147955899 -54372448 - L1MC5 LINE L1 -316 7645 7325 745 191 53 16 chr4 147955902 147956090 -54372257 - MER3 DNA MER1_type -9 200 6 758 179 113 140 chr4 147956236 147956793 -54371554 - L1MC5 LINE L1 -774 7187 6646 237 264 181 42 chr4 147956815 147957000 -54371347 - MIR3 SINE MIR -56 206 4 23 68 0 0 chr4 147957142 147957186 -54371161 + AT_rich Low_complexity Low_complexity 1 44 0 1890 159 0 28 chr4 147958551 147958871 -54369476 - AluSx SINE Alu -1 311 1 46 19 0 0 chr4 147958886 147958939 -54369408 + AT_rich Low_complexity Low_complexity 1 53 0 619 0 0 0 chr4 147958939 147959007 -54369340 - L1PA6 LINE L1 -13 6141 6074 719 210 32 25 chr4 147959383 147959540 -54368807 - FAM SINE Alu -17 158 1 506 135 21 3 chr4 147959541 147959642 -54368705 - L1MD2 LINE L1 -330 5826 5725 2125 112 14 0 chr4 147959998 147960292 -54368055 - AluSp SINE Alu -15 298 1 2040 104 43 20 chr4 147960694 147960993 -54367354 - AluSx SINE Alu -6 306 1 264 30 0 0 chr4 147961057 147961090 -54367257 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 852 158 69 74 chr4 147961642 147961723 -54366624 + MER3 DNA MER1_type 2 82 -127 2058 133 7 0 chr4 147961723 147962025 -54366322 - AluJb SINE Alu -8 304 1 852 158 69 74 chr4 147962025 147962146 -54366201 + MER3 DNA MER1_type 82 203 -6 2308 74 7 0 chr4 147962414 147962719 -54365628 - AluY SINE Alu 0 307 1 1984 117 0 57 chr4 147963059 147963375 -54364972 - AluSq SINE Alu -15 298 1 241 86 0 0 chr4 147963595 147963630 -54364717 - Alu SINE Alu -267 35 1 429 214 40 63 chr4 147963632 147963758 -54364589 - L2 LINE L2 0 3313 3191 198 264 57 0 chr4 147965696 147965749 -54362598 - L2 LINE L2 -9 3263 3208 1887 92 26 73 chr4 147966495 147966798 -54361549 - AluSx SINE Alu -23 289 1 266 235 139 17 chr4 147967814 147967929 -54360418 - L1MD2 LINE L1 -390 5731 5603 1732 179 17 0 chr4 147968072 147968368 -54359979 - AluJo SINE Alu 0 312 12 364 299 36 80 chr4 147968410 147968771 -54359576 - L1MD2 LINE L1 -942 5204 4860 376 383 64 4 chr4 147969008 147969243 -54359104 - L1MD2 LINE L1 -1871 4275 4027 342 164 0 0 chr4 147969374 147969429 -54358918 - Alu SINE Alu -248 55 1 272 280 10 10 chr4 147969605 147969705 -54358642 + GA-rich Low_complexity Low_complexity 3 102 0 457 292 143 14 chr4 147969941 147970150 -54358197 + MIR SINE MIR 1 236 -26 1041 161 0 42 chr4 147970650 147970818 -54357529 + FAM SINE Alu 1 42 -7 405 0 0 0 chr4 147970822 147970867 -54357480 + (CA)n Simple_repeat Simple_repeat 1 45 0 2338 57 0 4 chr4 147971239 147971540 -54356807 - AluY SINE Alu 0 300 1 1644 138 90 51 chr4 147972141 147972203 -54356144 - MER7A DNA MER2_type -2692 346 288 1922 156 17 0 chr4 147972203 147972505 -54355842 - AluJb SINE Alu -5 307 1 1644 138 90 51 chr4 147972505 147972776 -54355571 - MER7A DNA MER2_type -2750 288 2 2197 112 3 25 chr4 147973014 147973328 -54355019 - AluSx SINE Alu -5 307 1 339 326 94 57 chr4 147974275 147974658 -54353689 - ERVL LTR ERVL -663 5101 4705 276 30 0 0 chr4 147974766 147974799 -54353548 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 23 0 0 0 chr4 147975153 147975176 -54353171 + AT_rich Low_complexity Low_complexity 1 23 0 200 286 12 12 chr4 147975376 147975460 -54352887 + CT-rich Low_complexity Low_complexity 4 87 0 22 35 0 0 chr4 147975593 147975622 -54352725 + AT_rich Low_complexity Low_complexity 1 29 0 403 196 41 21 chr4 147976055 147976152 -54352195 + MIR SINE MIR 164 262 0 2366 81 0 3 chr4 147976578 147976873 -54351474 + AluSp SINE Alu 1 294 -19 22 35 0 0 chr4 147976952 147976981 -54351366 + AT_rich Low_complexity Low_complexity 1 29 0 313 301 85 39 chr4 147978682 147978835 -54349512 - MIR3 SINE MIR -6 202 43 2123 117 0 3 chr4 147979085 147979375 -54348972 + AluSx SINE Alu 1 289 -23 28 0 0 0 chr4 147980878 147980906 -54347441 + AT_rich Low_complexity Low_complexity 1 28 0 386 243 135 38 chr4 147982222 147982407 -54345940 - MER112 DNA MER1_type -9 251 49 272 288 192 7 chr4 147982494 147982640 -54345707 - MIR SINE MIR 0 262 90 2234 107 0 0 chr4 147982804 147983094 -54345253 - AluSx SINE Alu -22 290 1 1793 161 7 4 chr4 147983519 147983798 -54344549 + AluJb SINE Alu 2 281 -31 1023 182 0 0 chr4 147983932 147984097 -54344250 + AluJb SINE Alu 137 301 -11 755 202 0 0 chr4 147984459 147984588 -54343759 + FLAM_A SINE Alu 1 129 -4 321 0 61 0 chr4 147984594 147984643 -54343704 + (TA)n Simple_repeat Simple_repeat 2 53 0 1432 217 31 3 chr4 147985871 147986157 -54342190 + AluJb SINE Alu 1 294 -18 313 257 0 0 chr4 147986908 147986978 -54341369 - MER96 DNA MER1_type? -105 70 1 198 0 0 0 chr4 147988518 147988540 -54339807 + (T)n Simple_repeat Simple_repeat 1 22 0 1658 114 118 11 chr4 147990810 147991082 -54337265 - AluSg1 SINE Alu -8 301 1 672 232 0 0 chr4 147991195 147991320 -54337027 - FLAM_A SINE Alu -8 125 1 333 276 35 60 chr4 147993325 147993441 -54334906 - MER5B DNA MER1_type -9 169 57 224 273 0 0 chr4 147993499 147993543 -54334804 - MER5B DNA MER1_type -134 44 1 2297 73 3 0 chr4 147993615 147993903 -54334444 + AluSp SINE Alu 1 289 -24 2083 100 0 78 chr4 147994782 147995103 -54333244 - AluSx SINE Alu -16 296 1 13664 122 54 20 chr4 147995167 147995369 -54332978 - Tigger1 DNA MER2_type -1 2417 2223 2314 88 7 0 chr4 147995369 147995666 -54332681 - AluSp SINE Alu -14 299 1 13664 122 54 20 chr4 147995666 147996128 -54332219 - Tigger1 DNA MER2_type -195 2223 1778 1888 115 64 17 chr4 147996128 147996424 -54331923 - AluSx SINE Alu -2 310 1 13664 122 54 20 chr4 147996424 147996445 -54331902 - Tigger1 DNA MER2_type -640 1778 1759 1855 165 7 10 chr4 147996445 147996748 -54331599 - AluJb SINE Alu -10 302 1 1885 143 28 3 chr4 147996748 147997035 -54331312 - AluJb SINE Alu -18 294 1 13664 122 54 20 chr4 147997035 147998684 -54329663 - Tigger1 DNA MER2_type -658 1760 1 291 342 128 0 chr4 147998814 147998931 -54329416 - L2 LINE L2 -5 3267 3136 2231 90 14 0 chr4 147999130 147999420 -54328927 + AluSp SINE Alu 1 294 -19 1107 103 91 0 chr4 147999433 147999598 -54328749 + AluSq SINE Alu 127 306 -7 1970 158 26 0 chr4 148000085 148000388 -54327959 + AluJb SINE Alu 1 311 -1 222 267 248 20 chr4 148001399 148001500 -54326847 + MIR SINE MIR 1 124 -138 185 267 0 0 chr4 148001531 148001576 -54326771 + MIR SINE MIR 218 262 0 284 316 51 20 chr4 148001604 148001702 -54326645 - L2 LINE L2 -35 3237 3137 819 376 86 21 chr4 148001977 148002535 -54325812 + L2 LINE L2 2251 2844 -470 2598 100 54 10 chr4 148003081 148003491 -54324856 - MSTA LTR MaLR 0 428 1 1030 191 126 46 chr4 148003570 148003832 -54324515 - AluJo SINE Alu -25 287 5 376 238 93 33 chr4 148004100 148004119 -54324228 - L1MA10 LINE L1 0 6334 6316 988 233 86 26 chr4 148004119 148004467 -54323880 - L1ME1 LINE L1 -5 6161 5793 201 290 43 43 chr4 148005040 148005133 -54323214 + L2 LINE L2 3221 3313 0 2225 102 0 0 chr4 148006058 148006375 -54321972 + AluSq SINE Alu 1 317 0 183 311 35 110 chr4 148006397 148006530 -54321817 - L2 LINE L2 -2876 438 327 2039 114 53 0 chr4 148006530 148006811 -54321536 + AluSx SINE Alu 6 301 -11 183 311 35 110 chr4 148006811 148006905 -54321442 - L2 LINE L2 -2987 327 228 718 300 21 98 chr4 148007167 148007554 -54320793 - L2 LINE L2 -1 3271 2915 228 265 253 0 chr4 148007585 148007668 -54320679 + MIR SINE MIR 159 262 0 2187 76 9 67 chr4 148007703 148008033 -54320314 + AluSp SINE Alu 1 311 -2 212 320 265 15 chr4 148008040 148008312 -54320035 - L2 LINE L2 -454 2860 2521 905 183 46 90 chr4 148008314 148008710 -54319637 - MLT1C LTR MaLR -3 387 13 570 312 180 19 chr4 148008736 148009198 -54319149 - L2 LINE L2 -793 2521 1986 251 232 85 113 chr4 148009208 148009385 -54318962 - L2 LINE L2 -1473 1841 1670 247 248 128 51 chr4 148009551 148009668 -54318679 - L2 LINE L2 0 3313 3188 592 172 111 0 chr4 148009679 148009778 -54318569 + FLAM_A SINE Alu 1 110 -32 180 0 0 0 chr4 148009783 148009803 -54318544 + (GGGGA)n Simple_repeat Simple_repeat 4 23 0 349 154 13 13 chr4 148009809 148009887 -54318460 + GA-rich Low_complexity Low_complexity 2 79 0 1910 266 54 30 chr4 148009901 148010167 -54318180 - L2 LINE L2 -124 3189 2931 2386 103 0 3 chr4 148010167 148010478 -54317869 + AluSq SINE Alu 1 310 -3 1910 266 54 30 chr4 148010478 148010891 -54317456 - L2 LINE L2 -382 2931 2474 208 293 94 19 chr4 148011007 148011113 -54317234 - MIR SINE MIR -30 232 119 310 193 105 18 chr4 148011497 148011611 -54316736 - L1MB3 LINE L1 0 6183 6060 * 3166 193 34 46 chr4 148011585 148012268 -54316079 - L1MA4 LINE L1 -279 6021 5332 2170 95 27 14 chr4 148012268 148012562 -54315785 - AluSc SINE Alu -11 298 1 3166 193 34 46 chr4 148012562 148013270 -54315077 - L1MA4 LINE L1 -968 5332 4639 4704 61 35 10 chr4 148013608 148014609 -54313738 + MER11A LTR ERVK 1 1266 0 220 71 71 0 chr4 148014666 148014708 -54313639 + CT-rich Low_complexity Low_complexity 4 48 0 1672 102 180 0 chr4 148014774 148015029 -54313318 - AluSx SINE Alu -11 301 1 526 255 109 58 chr4 148015161 148015405 -54312942 + MIR SINE MIR 11 262 0 262 339 74 0 chr4 148015415 148015536 -54312811 + MIR3 SINE MIR 77 206 -2 490 276 90 72 chr4 148015672 148016104 -54312243 - L1ME4a LINE L1 -113 6008 5569 509 239 9 75 chr4 148016153 148016379 -54311968 - L1ME4a LINE L1 -1448 4698 4488 21 0 0 0 chr4 148016421 148016442 -54311905 + AT_rich Low_complexity Low_complexity 1 21 0 1916 142 28 0 chr4 148016453 148016774 -54311573 - AluSx SINE Alu 0 312 2 612 291 121 35 chr4 148016841 148017123 -54311224 - L2 LINE L2 0 3313 3008 989 305 98 35 chr4 148017576 148017624 -54310723 + L2 LINE L2 185 229 -3085 2303 97 3 0 chr4 148017624 148017922 -54310425 - AluSx SINE Alu -11 301 3 989 305 98 35 chr4 148017922 148018335 -54310012 + L2 LINE L2 229 683 -2631 2214 94 0 14 chr4 148018335 148018632 -54309715 - AluY SINE Alu -18 293 1 989 305 98 35 chr4 148018632 148018677 -54309670 + L2 LINE L2 683 724 -2590 901 253 93 37 chr4 148018747 148019071 -54309276 - LTR40b LTR ERVL -1 461 120 3423 210 102 54 chr4 148019273 148019469 -54308878 + L1MDa LINE L1 1005 1190 -5350 2241 216 52 18 chr4 148019469 148019970 -54308377 + LTR40a LTR ERVL 1 518 -1 3423 210 102 54 chr4 148019970 148020545 -54307802 + L1MDa LINE L1 1190 1736 -4804 2417 81 0 3 chr4 148020545 148020842 -54307505 - AluY SINE Alu -15 296 1 3423 210 102 54 chr4 148020842 148021137 -54307210 + L1MDa LINE L1 1736 2141 -4399 3318 53 35 0 chr4 148021137 148021532 -54306815 - L1PA7 LINE L1 0 6154 5746 3423 210 102 54 chr4 148021532 148021689 -54306658 + L1MDa LINE L1 2141 2289 -4251 846 241 132 13 chr4 148021758 148022069 -54306278 + L2 LINE L2 2924 3271 -42 735 241 54 26 chr4 148022122 148022562 -54305785 - L1ME LINE L1 -3634 2446 1993 2591 38 0 0 chr4 148022580 148022870 -54305477 - AluY SINE Alu -15 296 7 880 252 51 21 chr4 148023286 148023520 -54304827 - MIR SINE MIR -21 241 1 2056 121 59 35 chr4 148023530 148023794 -54304553 - MER7A DNA MER2_type -2692 346 73 1309 167 31 4 chr4 148023794 148024022 -54304325 - MER46A DNA MER2_type 0 236 3 2056 121 59 35 chr4 148024022 148024096 -54304251 - MER7A DNA MER2_type -2965 73 2 552 304 74 11 chr4 148024137 148024479 -54303868 - L1ME LINE L1 -861 1580 1172 543 242 58 9 chr4 148024517 148024700 -54303647 + L1ME2 LINE L1 5972 6166 0 311 210 133 67 chr4 148024731 148024926 -54303421 + L1MC4 LINE L1 7831 8038 -4 533 251 31 58 chr4 148024950 148025104 -54303243 - L1ME LINE L1 -4954 1116 970 1740 166 3 11 chr4 148025104 148025388 -54302959 - AluJo SINE Alu -20 292 11 533 251 31 58 chr4 148025388 148025492 -54302855 - L1ME LINE L1 -5100 970 865 843 233 87 30 chr4 148025697 148026148 -54302199 - L1ME LINE L1 -5069 1001 531 1342 121 150 177 chr4 148026590 148026641 -54301706 - THE1C LTR MaLR 0 428 377 2174 110 10 0 chr4 148026641 148026933 -54301414 - AluSg SINE Alu -15 295 1 1342 121 150 177 chr4 148026933 148027090 -54301257 - THE1C LTR MaLR -51 377 217 248 0 0 30 chr4 148027090 148027123 -54301224 + (TTA)n Simple_repeat Simple_repeat 3 34 0 3459 14 0 0 chr4 148027123 148027491 -54300856 - L1PA3 LINE L1 -18 6137 5770 12626 23 0 0 chr4 148027493 148029647 -54298700 - L1PA2 LINE L1 0 6155 4002 1342 121 150 177 chr4 148029647 148029873 -54298474 - THE1C LTR MaLR -211 217 1 4555 153 40 8 chr4 148030471 148031263 -54297084 - L1 LINE L1 -1817 5748 4931 2202 98 7 3 chr4 148031270 148031567 -54296780 - AluSx SINE Alu -14 298 1 3783 75 27 20 chr4 148031567 148031963 -54296384 - L1 LINE L1 -4400 3165 2762 1899 155 24 3 chr4 148031963 148032260 -54296087 - AluSx SINE Alu -9 303 1 3783 75 27 20 chr4 148032260 148032412 -54295935 - L1 LINE L1 -4803 2762 2613 2346 108 0 0 chr4 148032415 148032712 -54295635 - AluSx SINE Alu -15 297 1 1256 166 5 31 chr4 148032739 148032813 -54295534 - L1M1 LINE L1 -6955 610 536 2393 90 0 0 chr4 148032813 148033114 -54295233 + AluSg1 SINE Alu 1 301 -8 1256 166 5 31 chr4 148033114 148033262 -54295085 - L1M1 LINE L1 -7029 536 394 1820 85 5 0 chr4 148083262 148083486 -54244861 - AluSp SINE Alu -88 225 1 258 132 0 0 chr4 148083486 148083524 -54244823 + Alu SINE Alu 237 274 -27 263 321 0 0 chr4 148083928 148084012 -54244335 + L3b LINE CR1 1193 1276 -307 524 247 112 6 chr4 148084026 148084196 -54244151 + MIR SINE MIR 75 262 0 1853 149 11 0 chr4 148085100 148085368 -54242979 - AluSx SINE Alu -41 271 1 318 212 153 0 chr4 148085393 148085478 -54242869 + MIR SINE MIR 106 203 -59 344 235 129 23 chr4 148085482 148085614 -54242733 - MLT1H1 LTR MaLR -9 558 413 457 325 103 13 chr4 148085698 148085932 -54242415 - MLT1H1 LTR MaLR -290 265 11 1309 273 119 93 chr4 148085945 148086100 -54242247 + Charlie7 DNA MER1_type 1521 1671 -941 1867 61 0 4 chr4 148086100 148086330 -54242017 - AluY SINE Alu 0 311 83 1309 273 119 93 chr4 148086330 148086975 -54241372 + Charlie7 DNA MER1_type 1671 2357 -255 2382 91 0 0 chr4 148086975 148087272 -54241075 + AluSx SINE Alu 5 301 -11 1309 273 119 93 chr4 148087272 148087522 -54240825 + Charlie7 DNA MER1_type 2357 2599 -13 2173 88 0 0 chr4 148088119 148088426 -54239921 + AluSg SINE Alu 38 344 0 188 367 0 0 chr4 148088565 148088625 -54239722 + MIR SINE MIR 106 165 -97 556 120 0 40 chr4 148088907 148089007 -54239340 - AluSg SINE Alu -213 97 2 431 283 31 19 chr4 148089193 148089352 -54238995 - MLT1J LTR MaLR -38 473 313 558 219 61 73 chr4 148089785 148090031 -54238316 - MLT1J LTR MaLR -228 283 41 1021 144 17 44 chr4 148090036 148090217 -54238130 + MLT1B LTR MaLR 1 176 -214 2083 141 0 0 chr4 148090220 148090526 -54237821 + AluSx SINE Alu 1 306 -6 1419 152 0 25 chr4 148090529 148090667 -54237680 + AluJb SINE Alu 1 132 -180 2512 52 0 16 chr4 148090667 148090974 -54237373 + AluY SINE Alu 1 302 -9 1419 152 0 25 chr4 148090974 148091072 -54237275 + AluJb SINE Alu 132 231 -81 827 150 92 0 chr4 148091073 148091226 -54237121 + MLT1B LTR MaLR 301 467 0 2244 51 25 0 chr4 148091297 148091573 -54236774 + L1PA5 LINE L1 5866 6148 -6 258 214 18 0 chr4 148091803 148091859 -54236488 + MIR SINE MIR 109 165 -97 189 0 0 0 chr4 148092099 148092120 -54236227 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 417 269 57 11 chr4 148092924 148093099 -54235248 + L1MC4 LINE L1 7719 7901 -141 222 37 0 0 chr4 148093340 148093367 -54234980 + (CA)n Simple_repeat Simple_repeat 2 28 0 502 302 26 26 chr4 148093374 148093606 -54234741 - L2 LINE L2 -161 3152 2921 2031 267 55 31 chr4 148093611 148093936 -54234411 - L1ME LINE L1 -663 5501 5185 2414 90 0 0 chr4 148093936 148094236 -54234111 - AluSx SINE Alu -12 300 1 2031 267 55 31 chr4 148094236 148094897 -54233450 - L1ME LINE L1 -979 5185 4489 1659 175 33 26 chr4 148094897 148095200 -54233147 - AluJo SINE Alu -7 305 1 2031 267 55 31 chr4 148095200 148095235 -54233112 - L1ME LINE L1 -1675 4489 4456 1769 145 20 30 chr4 148095260 148095556 -54232791 - AluSx SINE Alu -19 293 1 772 298 45 10 chr4 148095557 148095869 -54232478 - L1ME LINE L1 -1825 4321 3999 263 154 0 19 chr4 148095974 148096026 -54232321 - MIR SINE MIR -61 201 151 432 114 57 0 chr4 148096503 148096591 -54231756 + CT-rich Low_complexity Low_complexity 2 94 0 640 408 72 18 chr4 148096755 148097321 -54231026 - L2 LINE L2 0 3313 2707 2105 134 0 3 chr4 148097321 148097620 -54230727 - AluJb SINE Alu -14 298 1 640 408 72 18 chr4 148097620 148097690 -54230657 - L2 LINE L2 -606 2707 2642 276 261 51 11 chr4 148097757 148097875 -54230472 - MLT1J LTR MaLR -313 173 18 247 158 0 0 chr4 148097867 148097905 -54230442 - MLT1L LTR MaLR -576 39 2 * 594 259 139 48 chr4 148098341 148098657 -54229690 + Charlie7 DNA MER1_type 12 356 -2256 267 296 0 11 chr4 148098926 148099014 -54229333 + MIR SINE MIR 176 262 0 2045 127 61 25 chr4 148099174 148099536 -54228811 - THE1C LTR MaLR 0 375 1 351 286 51 31 chr4 148099731 148099927 -54228420 - L1MC5 LINE L1 -35 7926 7727 240 265 23 68 chr4 148100187 148100319 -54228028 + MER5A DNA MER1_type 61 186 -3 219 69 0 0 chr4 148100654 148100683 -54227664 + (CA)n Simple_repeat Simple_repeat 2 30 0 818 80 0 0 chr4 148100955 148101055 -54227292 + AluS SINE Alu 3 102 -211 2025 52 4 12 chr4 148101156 148101404 -54226943 - AluSq SINE Alu -41 272 27 304 206 0 16 chr4 148101619 148101682 -54226665 + L2 LINE L2 2419 2480 -834 2143 199 83 7 chr4 148101684 148102132 -54226215 + MER74A LTR ERVL 1 482 -76 1651 128 64 0 chr4 148102132 148102381 -54225966 + MER39B LTR ERV1 1 265 -388 675 134 0 2 chr4 148102381 148102612 -54225735 + AluSx SINE Alu 16 293 -17 383 93 19 0 chr4 148102612 148102666 -54225681 + MER39B LTR ERV1 262 316 -337 1335 201 107 100 chr4 148102669 148103376 -54224971 + LTR8A LTR ERV1 1 719 -8 1874 134 55 15 chr4 148103386 148103694 -54224653 + MER39B LTR ERV1 318 619 -3 330 103 0 52 chr4 148103694 148103739 -54224608 + MER74A LTR ERVL 505 546 -12 395 198 8 74 chr4 148103842 148103963 -54224384 + L2 LINE L2 2637 2749 -565 2269 110 0 3 chr4 148104039 148104347 -54224000 - AluSx SINE Alu -5 307 1 436 265 164 42 chr4 148104428 148104813 -54223534 + L2 LINE L2 2863 3294 -19 1966 128 7 3 chr4 148104821 148105125 -54223222 + L1PB3 LINE L1 5844 6148 -6 207 0 0 0 chr4 148105158 148105181 -54223166 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 321 198 162 34 chr4 148105566 148105695 -54222652 - MIR SINE MIR -66 142 7 * 623 269 192 36 chr4 148105687 148106104 -54222243 - L2 LINE L2 0 3313 2832 186 203 149 27 chr4 148106152 148106226 -54222121 - MIR SINE MIR -166 96 14 2085 125 20 3 chr4 148106440 148106743 -54221604 + AluSx SINE Alu 2 309 -3 625 248 117 9 chr4 148106919 148107133 -54221214 + MIR SINE MIR 15 251 -11 21 57 0 0 chr4 148107187 148107222 -54221125 + AT_rich Low_complexity Low_complexity 1 35 0 329 303 20 0 chr4 148107282 148107381 -54220966 + MLT1L LTR MaLR 1 101 -514 815 229 112 30 chr4 148107459 148107730 -54220617 + MLT1L LTR MaLR 238 607 -8 282 56 0 0 chr4 148107910 148107946 -54220401 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 2274 108 0 7 chr4 148108847 148109144 -54219203 + AluSx SINE Alu 1 295 -17 24 32 0 0 chr4 148111575 148111606 -54216741 + AT_rich Low_complexity Low_complexity 1 31 0 248 220 0 44 chr4 148112535 148112626 -54215721 + (CAGAGA)n Simple_repeat Simple_repeat 4 90 0 481 209 216 13 chr4 148114857 148115010 -54213337 + MER5A DNA MER1_type 6 189 0 2065 145 6 10 chr4 148115637 148115948 -54212399 - AluSx SINE Alu 0 312 3 2302 117 0 3 chr4 148116029 148116336 -54212011 + AluSx SINE Alu 1 306 -6 614 282 17 26 chr4 148116517 148116751 -54211596 + MIR SINE MIR 28 259 -3 1638 175 17 7 chr4 148116892 148117183 -54211164 + AluSx SINE Alu 1 294 -18 323 279 57 76 chr4 148117449 148117607 -54210740 + MIR SINE MIR 103 257 -5 2143 129 0 3 chr4 148117774 148118076 -54210271 + AluSp SINE Alu 1 301 -12 261 346 101 38 chr4 148118832 148119069 -54209278 + L3 LINE CR1 1134 1385 -192 2333 107 3 0 chr4 148119069 148119379 -54208968 + AluSx SINE Alu 1 311 -1 181 279 0 33 chr4 148119448 148119509 -54208838 + L3 LINE CR1 1419 1477 -100 1234 131 66 164 chr4 148119549 148119976 -54208371 - L1MB7 LINE L1 0 6184 5800 2247 105 0 3 chr4 148120075 148120371 -54207976 + AluSp SINE Alu 1 295 -18 2096 132 0 7 chr4 148121003 148121298 -54207049 - AluSx SINE Alu -19 293 1 198 103 0 0 chr4 148121320 148121349 -54206998 + (CAAAA)n Simple_repeat Simple_repeat 5 33 0 408 191 67 19 chr4 148121889 148121994 -54206353 - L2 LINE L2 -10 3303 3194 206 303 45 0 chr4 148122020 148122109 -54206238 + L2 LINE L2 3127 3219 -94 366 239 78 63 chr4 148122128 148122270 -54206077 + MIR SINE MIR 1 144 -118 244 331 21 28 chr4 148122625 148122770 -54205577 + Tigger8 DNA MER2_type 436 579 -87 1365 171 9 0 chr4 148123772 148123994 -54204353 + MER58A DNA MER1_type 1 224 0 2288 116 0 0 chr4 148124012 148124313 -54204034 + AluSq SINE Alu 1 301 -12 279 268 22 36 chr4 148124481 148124619 -54203728 + MLT1H LTR MaLR 50 185 -364 2403 110 0 0 chr4 148125609 148125919 -54202428 - AluSx SINE Alu -2 310 1 756 242 157 66 chr4 148127162 148127633 -54200714 - LTR33A LTR ERVL -3 520 7 2118 122 7 0 chr4 148127688 148127982 -54200365 - AluSx SINE Alu -16 296 1 1082 162 12 0 chr4 148128906 148129079 -54199268 - AluSg/x SINE Alu -4 308 134 1737 153 16 45 chr4 148129136 148129444 -54198903 - AluJb SINE Alu -13 299 1 288 276 112 0 chr4 148129471 148129605 -54198742 - MIR SINE MIR -61 201 53 1811 148 6 61 chr4 148129849 148130132 -54198215 - MER7A DNA MER2_type -2696 342 82 1855 171 0 19 chr4 148130132 148130448 -54197899 + AluJo SINE Alu 1 310 -2 1811 148 6 61 chr4 148130448 148130509 -54197838 - MER7A DNA MER2_type -2956 82 19 1070 145 75 5 chr4 148130509 148130709 -54197638 - L1MD3 LINE L1 -52 7943 7730 231 86 241 0 chr4 148131006 148131064 -54197283 + L1ME4a LINE L1 6048 6119 -2 507 326 0 17 chr4 148131349 148131530 -54196817 + MLT1H LTR MaLR 47 224 -325 192 77 0 0 chr4 148133006 148133032 -54195315 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 21 0 0 0 chr4 148133647 148133668 -54194679 + AT_rich Low_complexity Low_complexity 1 21 0 2007 127 3 14 chr4 148134671 148134963 -54193384 + AluSx SINE Alu 6 294 -18 1630 189 23 13 chr4 148135017 148135323 -54193024 + AluJb SINE Alu 1 309 -3 282 73 0 0 chr4 148136811 148136852 -54191495 + (TATG)n Simple_repeat Simple_repeat 4 44 0 23 0 0 0 chr4 148137150 148137173 -54191174 + AT_rich Low_complexity Low_complexity 1 23 0 1689 144 0 8 chr4 148137252 148137508 -54190839 - AluJb SINE Alu -19 293 40 238 221 65 39 chr4 148137521 148137598 -54190749 - L2 LINE L2 -16 3256 3178 804 120 62 78 chr4 148138080 148138272 -54190075 - MER53 DNA DNA 0 189 1 907 226 20 10 chr4 148138836 148139035 -54189312 + MER58A DNA MER1_type 24 224 0 2036 140 7 0 chr4 148139290 148139576 -54188771 + AluSx SINE Alu 5 292 -20 1808 126 4 0 chr4 148139578 148139824 -54188523 + AluSq SINE Alu 1 247 -66 22 35 0 0 chr4 148140010 148140039 -54188308 + AT_rich Low_complexity Low_complexity 1 29 0 1912 147 30 35 chr4 148140821 148141188 -54187159 + MLT1A1 LTR MaLR 1 365 0 187 130 22 22 chr4 148141194 148141240 -54187107 + (TAA)n Simple_repeat Simple_repeat 1 46 0 349 270 80 15 chr4 148141253 148141390 -54186957 - MIR SINE MIR -19 243 98 521 292 36 12 chr4 148141621 148141789 -54186558 + MIR SINE MIR 12 183 -79 245 343 74 0 chr4 148141930 148142038 -54186309 + L3 LINE CR1 1455 1570 -7 4098 107 18 11 chr4 148143072 148143700 -54184647 + L1MA6 LINE L1 5669 6300 0 24 0 0 0 chr4 148143884 148143908 -54184439 + AT_rich Low_complexity Low_complexity 1 24 0 2253 56 0 42 chr4 148144832 148145148 -54183199 + AluY SINE Alu 5 308 0 1865 145 3 14 chr4 148145165 148145448 -54182899 + AluJb SINE Alu 1 280 -32 405 0 0 0 chr4 148145448 148145493 -54182854 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 336 24 0 0 chr4 148145955 148145996 -54182351 + (TG)n Simple_repeat Simple_repeat 1 41 0 371 65 0 0 chr4 148146347 148146393 -54181954 - AluJo SINE Alu -9 293 248 848 182 88 21 chr4 148146393 148146585 -54181762 - AluJo SINE Alu -107 205 1 2270 117 0 3 chr4 148149506 148149814 -54178533 + AluSq SINE Alu 1 307 -6 339 250 0 0 chr4 148150670 148150770 -54177577 + CT-rich Low_complexity Low_complexity 1 100 0 1474 173 33 78 chr4 148150770 148150943 -54177404 - AluJo SINE Alu -19 293 139 1893 117 0 8 chr4 148150943 148151200 -54177147 - AluSq SINE Alu -21 292 38 1474 173 33 78 chr4 148151200 148151333 -54177014 - AluJo SINE Alu -173 139 1 766 105 81 16 chr4 148152896 148153020 -54175327 + FLAM_C SINE Alu 1 132 -1 27 39 0 19 chr4 148153140 148153180 -54175167 + AT_rich Low_complexity Low_complexity 1 41 -10 345 111 19 0 chr4 148153180 148153234 -54175113 - L1PA16 LINE L1 -9 6157 6103 27 39 0 19 chr4 148153234 148153245 -54175102 + AT_rich Low_complexity Low_complexity 41 51 0 583 254 49 0 chr4 148154701 148154886 -54173461 + MIR SINE MIR 54 247 -15 486 293 0 8 chr4 148155240 148155373 -54172974 - MER94 DNA DNA -2 132 1 25 0 0 0 chr4 148156771 148156796 -54171551 + GC_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr4 148157151 148157177 -54171170 + GC_rich Low_complexity Low_complexity 1 26 0 204 40 0 0 chr4 148157390 148157415 -54170932 + (GGA)n Simple_repeat Simple_repeat 1 25 0 218 203 31 47 chr4 148161390 148161454 -54166893 + MIR3 SINE MIR 116 178 -30 237 224 0 30 chr4 148161738 148161805 -54166542 + G-rich Low_complexity Low_complexity 2 66 0 2045 125 0 38 chr4 148162367 148162687 -54165660 + AluSx SINE Alu 1 308 -4 316 242 156 8 chr4 148165122 148165250 -54163097 - MIR SINE MIR -65 197 51 2932 105 21 0 chr4 148165402 148165821 -54162526 - MSTA LTR MaLR 0 428 1 2082 112 16 10 chr4 148166276 148166580 -54161767 - AluSq SINE Alu -7 306 1 239 242 124 20 chr4 148166639 148166792 -54161555 - L1ME4a LINE L1 -4 6117 5949 1333 107 0 11 chr4 148166893 148167071 -54161276 - AluSg1 SINE Alu -124 185 10 821 154 0 22 chr4 148167104 148167240 -54161107 + FLAM_C SINE Alu 1 133 0 291 272 19 19 chr4 148167352 148167455 -54160892 + L1ME4a LINE L1 5952 6054 -67 274 309 109 6 chr4 148167531 148167696 -54160651 + MIR SINE MIR 73 254 -8 383 115 0 0 chr4 148167829 148167881 -54160466 + Alu SINE Alu 2 53 -248 479 299 127 42 chr4 148167924 148168279 -54160068 + L2 LINE L2 2921 3305 -8 2203 98 0 0 chr4 148168463 148168778 -54159569 + AluSx SINE Alu 5 319 0 191 61 30 0 chr4 148168845 148168878 -54159469 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2265 114 7 0 chr4 148170312 148170620 -54157727 - AluSx SINE Alu -2 310 1 2364 120 25 32 chr4 148170682 148170842 -54157505 + L1MA5 LINE L1 5891 6051 -249 2240 127 0 0 chr4 148170842 148171141 -54157206 + AluSx SINE Alu 1 299 -13 2364 120 25 32 chr4 148171141 148171388 -54156959 + L1MA5 LINE L1 6051 6295 -5 2240 117 0 0 chr4 148171622 148171921 -54156426 + AluSx SINE Alu 1 299 -13 199 365 52 10 chr4 148171929 148172025 -54156322 + MIR SINE MIR 42 141 -67 336 200 29 57 chr4 148172406 148172511 -54155836 + MIR SINE MIR 91 192 -70 881 210 113 118 chr4 148172575 148172803 -54155544 - MLT1C LTR MaLR 0 467 240 2197 113 7 3 chr4 148172803 148173104 -54155243 - AluSx SINE Alu -1 311 10 881 210 113 118 chr4 148173104 148173247 -54155100 - MLT1C LTR MaLR -227 240 98 924 136 0 27 chr4 148173277 148173461 -54154886 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 1033 178 159 0 chr4 148173461 148173675 -54154672 - AluJo SINE Alu -64 248 1 347 135 278 1 chr4 148173675 148173751 -54154596 - MLT1C LTR MaLR -295 95 1 391 199 169 52 chr4 148174160 148174296 -54154051 + MIR SINE MIR 30 181 -81 2170 109 0 0 chr4 148174916 148175192 -54153155 - AluSx SINE Alu -30 282 7 194 241 74 0 chr4 148175743 148175797 -54152550 + MIR3 SINE MIR 97 154 -54 648 161 173 48 chr4 148177124 148177223 -54151124 - MER5A DNA MER1_type 0 189 104 2201 160 8 14 chr4 148177223 148177586 -54150761 - MLT1A1 LTR MaLR 0 365 5 648 161 173 48 chr4 148177586 148177654 -54150693 - MER5A DNA MER1_type -85 104 1 2291 120 0 7 chr4 148177659 148177968 -54150379 - AluSx SINE Alu -5 307 1 21 36 0 0 chr4 148178200 148178228 -54150119 + AT_rich Low_complexity Low_complexity 1 28 0 301 243 81 18 chr4 148178514 148178625 -54149722 - L1M4 LINE L1 -2688 3458 3341 1764 98 42 30 chr4 148178692 148178956 -54149391 - LTR8 LTR ERV1 0 691 425 909 208 57 70 chr4 148179048 148179433 -54148914 - LTR40b LTR ERVL -4 458 3 189 0 0 0 chr4 148179433 148179454 -54148893 + (CAAT)n Simple_repeat Simple_repeat 1 21 0 1153 182 35 13 chr4 148179466 148179558 -54148789 - AluJo SINE Alu 0 374 285 1098 64 0 43 chr4 148179558 148179746 -54148601 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1153 182 35 13 chr4 148179746 148179946 -54148401 - AluJo SINE Alu -89 285 77 334 268 120 60 chr4 148179947 148180197 -54148150 - L1M4 LINE L1 -2979 3167 2903 1958 152 0 0 chr4 148180228 148180517 -54147830 - AluSx SINE Alu -23 289 1 197 333 109 27 chr4 148180693 148180840 -54147507 + MIR3 SINE MIR 30 188 -20 2400 117 34 0 chr4 148181191 148181543 -54146804 - THE1B LTR MaLR 0 364 1 3307 165 19 71 chr4 148181595 148182323 -54146024 - LTR8 LTR ERV1 0 691 2 565 308 47 9 chr4 148182500 148182711 -54145636 - MIR SINE MIR -27 235 17 256 181 250 14 chr4 148182708 148182780 -54145567 + MER91B DNA MER1_type 41 129 -61 * 406 237 86 0 chr4 148182798 148182891 -54145456 + MER91B DNA MER1_type 90 190 0 2336 159 12 12 chr4 148182927 148182945 -54145402 - MER57A LTR ERV1 0 403 386 2247 118 3 3 chr4 148182945 148183258 -54145089 + AluSq SINE Alu 1 313 0 2336 159 12 12 chr4 148183258 148183641 -54144706 - MER57A LTR ERV1 -16 387 2 2375 115 0 0 chr4 148183814 148184172 -54144175 - AluSx SINE Alu 0 358 1 2393 82 7 3 chr4 148185099 148185403 -54142944 + AluSg SINE Alu 1 305 -5 455 204 133 0 chr4 148186066 148186179 -54142168 - L2 LINE L2 0 3313 3186 600 143 86 4 chr4 148187398 148187530 -54140817 - L1ME2 LINE L1 0 6178 6037 328 310 111 23 chr4 148188613 148188784 -54139563 - MIR SINE MIR -56 206 21 2156 118 14 0 chr4 148188785 148188914 -54139433 + AluSx SINE Alu 1 127 -185 594 0 0 0 chr4 148188914 148188980 -54139367 + (TA)n Simple_repeat Simple_repeat 2 67 0 2156 118 14 0 chr4 148188980 148189139 -54139208 + AluSx SINE Alu 127 293 -19 337 235 49 0 chr4 148189163 148189244 -54139103 + Charlie2 DNA MER1_type 1 85 -2697 867 249 52 45 chr4 148189250 148189559 -54138788 + MLT1G1 LTR MaLR 18 278 -277 1622 198 57 13 chr4 148189559 148189791 -54138556 - MER68 LTR ERV1 0 562 342 1995 135 75 26 chr4 148189791 148190138 -54138209 - THE1B LTR MaLR 0 364 1 1622 198 57 13 chr4 148190138 148190393 -54137954 - MER68 LTR ERV1 -220 342 1 766 220 73 36 chr4 148190421 148190646 -54137701 + MLT1G1 LTR MaLR 269 586 -9 420 207 24 0 chr4 148190814 148190896 -54137451 - MER58 DNA MER1_type 0 2420 132 2579 53 0 3 chr4 148190954 148191253 -54137094 + AluY SINE Alu 1 298 -13 384 214 48 58 chr4 148191517 148191620 -54136727 - MER58 DNA MER1_type -113 102 1 229 170 21 0 chr4 148191689 148191736 -54136611 + Charlie2 DNA MER1_type 276 323 -2459 2873 190 51 56 chr4 148191741 148192493 -54135854 + Charlie2 DNA MER1_type 1857 2606 -256 2343 95 0 0 chr4 148192493 148192788 -54135559 - AluSq SINE Alu -18 295 1 2873 190 51 56 chr4 148192788 148192912 -54135435 + Charlie2 DNA MER1_type 2606 2729 -133 950 170 70 0 chr4 148192919 148193090 -54135257 + MER5A DNA MER1_type 7 189 0 348 145 31 176 chr4 148193093 148193252 -54135095 + Charlie2 DNA MER1_type 2726 2861 -1 228 256 93 16 chr4 148193360 148193489 -54134858 - L2 LINE L2 -270 3002 2864 717 159 53 0 chr4 148195394 148195507 -54132840 + FLAM_A SINE Alu 5 123 -10 556 256 89 32 chr4 148195599 148195784 -54132563 + MIR SINE MIR 3 207 -55 297 0 0 0 chr4 148195784 148195817 -54132530 + (TG)n Simple_repeat Simple_repeat 1 33 0 556 256 89 32 chr4 148195817 148195877 -54132470 + MIR SINE MIR 207 262 0 1300 161 0 0 chr4 148196281 148196505 -54131842 + L1MA6 LINE L1 6073 6296 -4 1458 245 82 2 chr4 148198052 148198501 -54129846 + L2 LINE L2 1976 2460 -854 308 247 34 0 chr4 148198502 148198591 -54129756 + MLT1C LTR MaLR 1 92 -375 2172 113 7 3 chr4 148198591 148198882 -54129465 - AluSx SINE Alu -20 292 1 1087 178 144 59 chr4 148199004 148199224 -54129123 + MLT1C LTR MaLR 82 345 -122 1624 121 47 123 chr4 148199224 148199589 -54128758 + MER1B DNA MER1_type 1 337 0 1087 178 144 59 chr4 148199589 148199723 -54128624 + MLT1C LTR MaLR 345 466 -1 1608 243 69 39 chr4 148199724 148200032 -54128315 + L2 LINE L2 2457 2754 -559 1888 125 3 44 chr4 148200032 148200328 -54128019 + AluSx SINE Alu 1 284 -28 1608 243 69 39 chr4 148200328 148200851 -54127496 + L2 LINE L2 2754 3311 -2 1871 137 42 39 chr4 148201009 148201052 -54127295 - L1MB2 LINE L1 -7 6164 6123 2328 94 3 7 chr4 148201052 148201359 -54126988 - AluSx SINE Alu -6 306 1 1871 137 42 39 chr4 148201359 148201674 -54126673 - L1MB2 LINE L1 -48 6123 5805 571 180 30 14 chr4 148202256 148202274 -54126073 + (TA)n Simple_repeat Simple_repeat 1 17 -728 1926 106 55 18 chr4 148202274 148202548 -54125799 - AluSx SINE Alu -23 289 6 571 180 30 14 chr4 148202548 148202990 -54125357 + (TA)n Simple_repeat Simple_repeat 17 745 0 833 291 17 0 chr4 148202990 148203220 -54125127 - MIR SINE MIR -26 236 3 436 219 109 0 chr4 148204641 148204760 -54123587 - L2 LINE L2 0 3313 3182 640 268 102 73 chr4 148204863 148205169 -54123178 - MLT1C LTR MaLR 0 467 144 1396 178 96 61 chr4 148205169 148205546 -54122801 + MLT1B LTR MaLR 1 390 0 640 268 102 73 chr4 148205546 148205650 -54122697 - MLT1C LTR MaLR -323 144 45 2293 114 3 0 chr4 148205662 148205968 -54122379 - AluSx SINE Alu -3 309 3 348 308 115 50 chr4 148205989 148206860 -54121487 - L2 LINE L2 -179 3093 2128 364 224 0 13 chr4 148207717 148207793 -54120554 - L1 LINE L1 -1980 4166 4092 195 129 0 0 chr4 148208206 148208237 -54120110 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 301 250 59 82 chr4 148208511 148208731 -54119616 - L3b LINE CR1 -223 1360 1146 2136 122 10 3 chr4 148208775 148209078 -54119269 + AluSq SINE Alu 1 305 -8 28 0 0 0 chr4 148209182 148209210 -54119137 + AT_rich Low_complexity Low_complexity 1 28 0 570 306 39 9 chr4 148209359 148209588 -54118759 - MIR SINE MIR -9 253 18 291 28 0 0 chr4 148209624 148209660 -54118687 + (TG)n Simple_repeat Simple_repeat 2 37 0 1109 204 27 82 chr4 148209773 148209986 -54118361 - L1M4 LINE L1 -1740 4406 4216 2319 97 10 0 chr4 148209986 148210294 -54118053 - AluSq SINE Alu -2 311 1 1109 204 27 82 chr4 148210294 148210408 -54117939 - L1M4 LINE L1 -1930 4216 4097 457 273 58 41 chr4 148210516 148210688 -54117659 - MLT1J LTR MaLR -310 201 27 1216 183 13 35 chr4 148210976 148211043 -54117304 - MER58A DNA MER1_type -2196 224 157 1748 184 194 5 chr4 148211043 148211466 -54116881 + MLT1D LTR MaLR 1 503 -2 1216 183 13 35 chr4 148211466 148211627 -54116720 - MER58A DNA MER1_type -2263 157 1 1987 154 3 0 chr4 148211680 148211978 -54116369 - AluJb SINE Alu -13 299 1 295 81 0 0 chr4 148212484 148212521 -54115826 + tRNA-Asp-GAC tRNA tRNA 1 37 -38 1866 155 3 23 chr4 148212535 148212839 -54115508 + AluJo SINE Alu 1 298 -14 354 269 233 46 chr4 148213386 148213605 -54114742 - MIR SINE MIR 0 262 3 234 0 0 0 chr4 148213640 148213666 -54114681 + (CAAT)n Simple_repeat Simple_repeat 1 26 0 257 275 0 14 chr4 148213683 148213752 -54114595 - L2 LINE L2 -60 3253 3186 909 118 0 22 chr4 148214324 148214460 -54113887 + FLAM_C SINE Alu 1 133 0 327 301 0 0 chr4 148214659 148214752 -54113595 - L1MC4 LINE L1 -1336 6706 6614 363 192 0 0 chr4 148214754 148214827 -54113520 + (TA)n Simple_repeat Simple_repeat 2 74 0 1443 199 7 0 chr4 148214827 148215113 -54113234 - AluSx SINE Alu -21 291 4 2192 135 0 0 chr4 148215625 148215928 -54112419 + AluSx SINE Alu 1 303 -9 229 233 35 35 chr4 148215929 148216015 -54112332 + L2 LINE L2 3146 3231 -82 288 186 0 0 chr4 148216092 148216151 -54112196 + A-rich Low_complexity Low_complexity 1 59 0 2237 102 0 13 chr4 148216192 148216495 -54111852 + AluSc SINE Alu 1 299 -10 246 230 292 19 chr4 148216841 148217002 -54111345 - MER112 DNA MER1_type -49 211 7 536 228 62 14 chr4 148217173 148217318 -54111029 + MIR SINE MIR 111 262 0 764 231 6 23 chr4 148217505 148217678 -54110669 + FAM SINE Alu 1 41 -8 1370 211 20 88 chr4 148217726 148217986 -54110361 - MLT1A1 LTR MaLR -44 321 88 2100 133 3 0 chr4 148217986 148218280 -54110067 - AluSx SINE Alu -17 295 1 1370 211 20 88 chr4 148218280 148218361 -54109986 - MLT1A1 LTR MaLR -277 88 3 2381 98 0 3 chr4 148218473 148218779 -54109568 + AluSq SINE Alu 1 305 -8 596 250 139 26 chr4 148219827 148220257 -54108090 + MLT1L LTR MaLR 90 614 -1 280 356 29 0 chr4 148220363 148220467 -54107880 + MIR3 SINE MIR 14 120 -88 2079 128 10 0 chr4 148220467 148220596 -54107751 + AluSp SINE Alu 1 127 -186 330 26 0 0 chr4 148220596 148220635 -54107712 + (TAA)n Simple_repeat Simple_repeat 2 40 0 2079 128 10 0 chr4 148220635 148220802 -54107545 + AluSp SINE Alu 127 300 -13 185 275 125 0 chr4 148220879 148220959 -54107388 + L2 LINE L2 3188 3277 -36 2058 109 33 0 chr4 148221022 148221317 -54107030 - AluSx SINE Alu 0 304 1 616 214 99 35 chr4 148221324 148221525 -54106822 - MIR SINE MIR -44 218 5 196 224 82 0 chr4 148221510 148221559 -54106788 + L2 LINE L2 3220 3272 0 * 1502 138 55 58 chr4 148222645 148222970 -54105377 - MER33 DNA MER1_type 0 324 1 24 0 0 0 chr4 148223081 148223105 -54105242 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 148223136 148223160 -54105187 + AT_rich Low_complexity Low_complexity 1 24 0 2149 122 0 16 chr4 148223274 148223577 -54104770 - AluSg SINE Alu -12 298 1 198 0 0 0 chr4 148224540 148224562 -54103785 + (T)n Simple_repeat Simple_repeat 1 22 0 558 236 79 28 chr4 148224810 148224914 -54103433 + MER5A DNA MER1_type 3 121 -68 2103 116 3 23 chr4 148224914 148225216 -54103131 - AluSx SINE Alu -12 300 5 558 236 79 28 chr4 148225216 148225289 -54103058 + MER5A DNA MER1_type 121 189 0 1507 161 97 82 chr4 148225360 148225898 -54102449 - MER67C LTR ERV1 -2 512 2 4343 111 9 16 chr4 148227098 148227764 -54100583 + L1MA4 LINE L1 5378 6038 -262 812 177 8 0 chr4 148227768 148227898 -54100449 + FLAM_C SINE Alu 1 131 -12 1425 132 11 45 chr4 148227904 148227935 -54100412 + L1MA4 LINE L1 6039 6070 -230 2282 98 0 3 chr4 148227935 148228230 -54100117 + AluSx SINE Alu 1 294 -18 1425 132 11 45 chr4 148228230 148228464 -54099883 + L1MA4 LINE L1 6070 6295 -5 1153 53 0 77 chr4 148230037 148230072 -54098275 - L1PA3 LINE L1 -1 6154 6118 181 54 0 54 chr4 148230072 148230109 -54098238 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1153 53 0 77 chr4 148230109 148230242 -54098105 - L1PA3 LINE L1 -37 6118 5999 1065 168 63 59 chr4 148230255 148230493 -54097854 - MER8 DNA MER2_type 0 239 1 216 0 0 0 chr4 148230496 148230520 -54097827 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1525 160 100 76 chr4 148230533 148230914 -54097433 - MLT1B LTR MaLR 0 390 1 1905 194 24 48 chr4 148231850 148232416 -54095931 - LTR26E LTR ERV1 0 610 1 1017 311 99 10 chr4 148232815 148233329 -54095018 + L2 LINE L2 687 1246 -2068 503 219 0 0 chr4 148233329 148233425 -54094922 - LTR33A LTR ERVL 0 523 428 3014 57 35 10 chr4 148233426 148233831 -54094516 + MER11A LTR ERVK 1 415 -851 * 3254 64 7 35 chr4 148233825 148234277 -54094070 + MER11A LTR ERVK 828 1266 0 13306 83 2 19 chr4 148234277 148236054 -54092293 + HERVK11 LTR ERVK 1 1748 -6205 * 21185 66 2 3 chr4 148236052 148238186 -54090161 + HERVK11 LTR ERVK 5357 7488 -465 2403 83 3 3 chr4 148238186 148238487 -54089860 + AluY SINE Alu 1 301 -10 21185 66 2 3 chr4 148238487 148238953 -54089394 + HERVK11 LTR ERVK 7488 7953 0 4746 73 14 30 chr4 148238953 148240106 -54088241 + MER11A LTR ERVK 1 1266 0 784 276 149 36 chr4 148240106 148240504 -54087843 - LTR33A LTR ERVL -73 450 2 186 143 0 0 chr4 148240598 148240633 -54087714 + (CA)n Simple_repeat Simple_repeat 2 36 0 1915 240 65 43 chr4 148240654 148241259 -54087088 - MLT2F LTR ERVL -43 620 3 340 237 82 0 chr4 148241524 148241621 -54086726 - ERVL-F LTR ERVL -328 5436 5332 742 191 8 0 chr4 148241625 148241779 -54086568 - AluJb SINE Alu 0 306 152 862 136 0 68 chr4 148242169 148242316 -54086031 - AluJb SINE Alu -175 137 1 1649 246 79 17 chr4 148242316 148242709 -54085638 - ERVL-F LTR ERVL -417 5347 4873 2532 61 0 26 chr4 148242709 148243022 -54085325 + AluY SINE Alu 1 305 -6 1649 246 79 17 chr4 148243022 148243276 -54085071 - ERVL-F LTR ERVL -891 4873 4636 436 146 61 0 chr4 148243277 148243359 -54084988 + L1MB1 LINE L1 6069 6155 -13 332 182 18 0 chr4 148243395 148243450 -54084897 - ERVL-F LTR ERVL -1117 4647 4592 * 903 243 0 19 chr4 148243449 148243659 -54084688 + ERVL LTR ERVL 4322 4527 -1237 256 342 125 18 chr4 148243957 148244238 -54084109 + L2 LINE L2 2354 2664 -650 236 250 16 0 chr4 148244655 148244719 -54083628 + L2 LINE L2 3242 3306 -7 231 312 58 35 chr4 148244738 148244911 -54083436 + L2 LINE L2 1922 2098 -1216 439 209 27 0 chr4 148244918 148245028 -54083319 - L1MA4A LINE L1 -2 6301 6189 3245 122 6 0 chr4 148245028 148245504 -54082843 - L1PB4 LINE L1 -98 6058 5580 2122 106 27 10 chr4 148245510 148245811 -54082536 - AluSx SINE Alu -6 306 1 312 161 0 0 chr4 148245835 148245891 -54082456 - L1MB8 LINE L1 -30 6148 6093 26 50 0 0 chr4 148245893 148245933 -54082414 + AT_rich Low_complexity Low_complexity 1 40 0 4325 151 36 25 chr4 148245937 148246348 -54081999 - L1MB4 LINE L1 -6 6174 5750 2150 113 7 13 chr4 148246348 148246650 -54081697 - AluSx SINE Alu -12 300 1 4325 151 36 25 chr4 148246650 148247024 -54081323 - L1MB4 LINE L1 -430 5750 5381 553 164 10 48 chr4 148247024 148247128 -54081219 + MLT1A1 LTR MaLR 1 100 -265 * 902 195 13 0 chr4 148247127 148247286 -54081061 + MLT1A1 LTR MaLR 204 364 -1 684 170 28 88 chr4 148247286 148247400 -54080947 - L1MB4 LINE L1 -773 5373 5272 1706 139 98 11 chr4 148247400 148247687 -54080660 - AluJb SINE Alu 0 312 1 684 170 28 88 chr4 148247687 148247754 -54080593 - L1MB4 LINE L1 -874 5272 5203 367 268 131 40 chr4 148247787 148248108 -54080239 + L2 LINE L2 2147 2496 -818 275 304 43 72 chr4 148248275 148248602 -54079745 + L2 LINE L2 2764 3083 -189 2234 114 0 0 chr4 148248673 148248962 -54079385 + AluSx SINE Alu 1 289 -23 316 180 0 0 chr4 148249074 148249124 -54079223 - Tigger1 DNA MER2_type -5 2413 2364 3854 150 32 13 chr4 148249224 148249931 -54078416 + L1MA3 LINE L1 5472 6192 -113 2090 153 15 12 chr4 148251831 148252171 -54076176 - MSTC LTR MaLR -8 420 80 2062 156 0 0 chr4 148252745 148253040 -54075307 + AluJb SINE Alu 1 295 -17 346 297 146 12 chr4 148253245 148253410 -54074937 + MIR SINE MIR 64 250 -12 428 345 25 20 chr4 148253543 148253740 -54074607 + MIR SINE MIR 50 247 -15 2134 133 7 7 chr4 148253880 148254188 -54074159 + AluSx SINE Alu 3 310 -2 584 124 0 0 chr4 148254902 148254991 -54073356 + AluS SINE Alu 224 312 0 2256 75 10 17 chr4 148255122 148255417 -54072930 - AluSc SINE Alu -16 293 1 198 0 0 0 chr4 148255778 148255800 -54072547 + (TC)n Simple_repeat Simple_repeat 2 23 0 1100 152 15 99 chr4 148255853 148256116 -54072231 - AluJo SINE Alu -16 296 56 21 0 0 0 chr4 148256664 148256685 -54071662 + AT_rich Low_complexity Low_complexity 1 21 0 1661 141 16 117 chr4 148256697 148256813 -54071534 + MLT1B LTR MaLR 1 127 -263 1891 157 0 3 chr4 148256813 148257112 -54071235 + AluJo SINE Alu 1 298 -14 1661 141 16 117 chr4 148257112 148257364 -54070983 + MLT1B LTR MaLR 127 332 -58 326 179 0 0 chr4 148257440 148257496 -54070851 + MLT1B LTR MaLR 335 390 0 298 95 54 14 chr4 148257582 148257656 -54070691 + (TG)n Simple_repeat Simple_repeat 2 78 0 441 213 160 32 chr4 148258178 148258366 -54069981 + MIR SINE MIR 11 222 -40 200 200 111 0 chr4 148258691 148258736 -54069611 + L3 LINE CR1 1425 1474 -103 2070 125 0 0 chr4 148258986 148259289 -54069058 - AluSg SINE Alu 0 306 4 377 135 0 0 chr4 148259338 148259438 -54068909 + Alu SINE Alu 234 333 0 1076 232 176 12 chr4 148260155 148260496 -54067851 - MLT1G LTR MaLR -23 567 171 248 259 17 0 chr4 148260519 148260577 -54067770 - MLT1G LTR MaLR -529 61 3 1475 98 14 0 chr4 148260624 148260838 -54067509 + L1PA13 LINE L1 5942 6158 -5 307 304 60 40 chr4 148261188 148261389 -54066958 + L2 LINE L2 2555 2759 -555 1191 172 14 19 chr4 148261400 148261615 -54066732 - MER20 DNA MER1_type 0 219 6 449 272 31 146 chr4 148261677 148262158 -54066189 + L2 LINE L2 2847 3272 0 2287 110 0 3 chr4 148262175 148262484 -54065863 - AluSx SINE Alu -4 308 1 983 130 78 0 chr4 148262529 148262683 -54065664 - FRAM SINE Alu 0 166 1 367 191 14 7 chr4 148263806 148263951 -54064396 + GA-rich Low_complexity Low_complexity 1 146 0 594 0 0 0 chr4 148263953 148264019 -54064328 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 221 243 93 84 chr4 148265013 148265120 -54063227 + MIR SINE MIR 85 192 -70 576 191 151 26 chr4 148265243 148265395 -54062952 + MER5B DNA MER1_type 1 171 -7 382 285 56 7 chr4 148265422 148265566 -54062781 + MIR SINE MIR 80 230 -32 23 0 0 29 chr4 148266009 148266028 -54062319 + AT_rich Low_complexity Low_complexity 1 20 -13 2201 96 0 17 chr4 148266028 148266321 -54062026 - AluSx SINE Alu -24 288 1 23 0 0 29 chr4 148266321 148266335 -54062012 + AT_rich Low_complexity Low_complexity 20 33 0 309 206 0 0 chr4 148266478 148266575 -54061772 + (TG)n Simple_repeat Simple_repeat 1 97 0 904 169 0 0 chr4 148267493 148267635 -54060712 + AluJb SINE Alu 165 306 -6 2162 112 0 47 chr4 148267939 148268261 -54060086 - AluSx SINE Alu -5 307 1 21 0 0 0 chr4 148268509 148268530 -54059817 + AT_rich Low_complexity Low_complexity 1 21 0 1178 201 121 41 chr4 148268547 148268885 -54059462 - MLT1A1 LTR MaLR 0 365 1 2462 53 3 10 chr4 148269368 148269667 -54058680 - AluY SINE Alu -14 297 1 790 178 52 5 chr4 148270119 148270310 -54058037 + LTR37A LTR ERV1 227 426 0 306 252 145 75 chr4 148270384 148270543 -54057804 - MIR SINE MIR -30 232 63 1517 187 79 18 chr4 148270592 148270934 -54057413 + MLT1A2 LTR MaLR 1 363 -11 1884 176 0 0 chr4 148271010 148271312 -54057035 - AluJo SINE Alu -10 302 1 1471 118 0 0 chr4 148271336 148271531 -54056816 - AluY SINE Alu -116 195 1 1076 157 0 12 chr4 148271544 148271710 -54056637 + FRAM SINE Alu 1 157 -19 270 81 0 0 chr4 148272382 148272419 -54055928 + (TG)n Simple_repeat Simple_repeat 1 37 0 974 128 41 17 chr4 148273335 148273507 -54054840 - MER57A LTR ERV1 0 403 228 636 84 0 0 chr4 148273509 148273592 -54054755 - MER57A LTR ERV1 -320 83 1 2262 99 0 0 chr4 148273862 148274155 -54054192 + AluSc SINE Alu 1 293 -16 4010 143 38 13 chr4 148274157 148274834 -54053513 - MER4D LTR ERV1 0 903 210 268 107 18 36 chr4 148274838 148274894 -54053453 - LTR46 LTR ERV1 0 460 406 1960 123 91 67 chr4 148274927 148275333 -54053014 - LTR46 LTR ERV1 -44 416 1 1415 112 5 0 chr4 148275333 148275530 -54052817 - MER4B LTR ERV1 -412 198 1 200 200 0 0 chr4 148275533 148275573 -54052774 + GA-rich Low_complexity Low_complexity 1 40 0 1362 219 109 39 chr4 148275949 148276525 -54051822 - LTR29 LTR ERV1 -3 608 10 1912 178 8 19 chr4 148276556 148276916 -54051431 - MER4D LTR ERV1 -1 902 547 1748 169 34 3 chr4 148276917 148277213 -54051134 + AluJb SINE Alu 1 305 -7 471 167 39 39 chr4 148277216 148277318 -54051029 - MER4E LTR ERV1 -616 163 62 * 1485 175 39 0 chr4 148277304 148277584 -54050763 - MER49 LTR ERV1 -629 294 4 971 96 15 7 chr4 148277782 148277917 -54050430 - AluSg/x SINE Alu -43 267 132 2189 132 0 0 chr4 148277917 148278227 -54050120 - AluSx SINE Alu -2 310 1 1867 119 0 12 chr4 148278884 148279137 -54049210 - AluSx SINE Alu -60 252 3 818 201 23 11 chr4 148279518 148279692 -54048655 - LTR39 LTR ERV1 0 783 608 1813 139 20 26 chr4 148279692 148279994 -54048353 - AluJb SINE Alu -7 305 6 685 136 10 0 chr4 148280014 148280117 -54048230 - AluJb SINE Alu -196 116 13 1458 145 4 13 chr4 148280120 148280354 -54047993 - LTR39 LTR ERV1 -152 631 400 1788 76 22 112 chr4 148280360 148280788 -54047559 - MER4A LTR ERV1 -2 655 131 2168 116 0 10 chr4 148280788 148281080 -54047267 + AluSx SINE Alu 6 294 -18 1788 76 22 112 chr4 148281080 148281199 -54047148 - MER4A LTR ERV1 -526 131 3 1929 165 62 31 chr4 148281201 148281588 -54046759 - LTR39 LTR ERV1 -383 400 2 849 197 90 52 chr4 148281818 148281845 -54046502 - L1ME1 LINE L1 -124 6042 6017 3288 98 36 18 chr4 148281845 148282343 -54046004 - MER84 LTR ERV1 0 507 1 849 197 90 52 chr4 148282343 148282604 -54045743 - L1ME1 LINE L1 -149 6017 5743 2299 147 37 37 chr4 148282612 148283020 -54045327 - MLT2D LTR ERVL -6 408 1 269 196 0 0 chr4 148283029 148283075 -54045272 - L1ME1 LINE L1 -637 5722 5677 2589 150 112 38 chr4 148283077 148283440 -54044907 + LTR49 LTR ERV1 1 420 -175 3618 75 90 49 chr4 148283440 148283790 -54044557 - MER4A LTR ERV1 0 600 215 2366 98 0 3 chr4 148283790 148284087 -54044260 - AluSp SINE Alu -16 297 2 3618 75 90 49 chr4 148284087 148284312 -54044035 - MER4A LTR ERV1 -385 215 1 2589 150 112 38 chr4 148284312 148284502 -54043845 + LTR49 LTR ERV1 420 595 0 1337 200 13 40 chr4 148284502 148284802 -54043545 - L1ME1 LINE L1 -491 5675 5384 513 323 53 12 chr4 148285571 148285912 -54042435 - L1M4 LINE L1 -2371 3775 3421 779 250 49 0 chr4 148285996 148286200 -54042147 - MER113 DNA MER1_type? -11 510 297 3782 242 95 35 chr4 148286200 148287306 -54041041 - HAL1 LINE L1 -17 2490 1266 1708 183 7 3 chr4 148287306 148287601 -54040746 - AluJb SINE Alu -16 296 1 3782 242 95 35 chr4 148287601 148288015 -54040332 - HAL1 LINE L1 -1241 1266 878 2132 239 76 99 chr4 148288024 148288192 -54040155 - L2 LINE L2 -2 3311 3141 1556 191 7 23 chr4 148288192 148288495 -54039852 + AluJo SINE Alu 1 298 -14 2132 239 76 99 chr4 148288495 148289026 -54039321 - L2 LINE L2 -172 3141 2599 2334 136 11 97 chr4 148289026 148289491 -54038856 - MER61B LTR ERV1 0 425 1 2132 239 76 99 chr4 148289491 148289987 -54038360 - L2 LINE L2 -714 2599 2158 2092 105 75 69 chr4 148289987 148290194 -54038153 - THE1B LTR MaLR 0 364 153 2120 135 3 6 chr4 148290194 148290505 -54037842 - AluSx SINE Alu -2 310 1 2092 105 75 69 chr4 148290505 148290659 -54037688 - THE1B LTR MaLR -211 153 1 2132 239 76 99 chr4 148290659 148290750 -54037597 - L2 LINE L2 -1155 2158 2066 1007 269 111 97 chr4 148290750 148291470 -54036877 - HAL1 LINE L1 -1628 879 143 987 110 0 182 chr4 148291470 148291706 -54036641 - 7SK RNA RNA 0 193 1 1007 269 111 97 chr4 148291706 148291852 -54036495 - HAL1 LINE L1 -2364 143 1 2510 132 20 83 chr4 148291895 148291949 -54036398 - MER4E LTR ERV1 0 766 710 2233 112 0 0 chr4 148291949 148292243 -54036104 - AluSx SINE Alu -18 294 1 2510 132 20 83 chr4 148292243 148292824 -54035523 - MER4E LTR ERV1 -56 710 1 553 232 97 0 chr4 148292824 148293009 -54035338 - MER113 DNA MER1_type? -210 311 109 374 316 84 7 chr4 148294351 148294506 -54033841 - L3b LINE CR1 -238 1345 1179 21 57 0 0 chr4 148294793 148294828 -54033519 + AT_rich Low_complexity Low_complexity 1 35 0 2370 98 3 3 chr4 148295104 148295409 -54032938 + AluSx SINE Alu 1 305 -7 276 239 56 99 chr4 148296155 148296282 -54032065 + Charlie7 DNA MER1_type 1 123 -2489 2245 110 0 0 chr4 148296282 148296572 -54031775 - AluSx SINE Alu -22 290 1 276 239 56 99 chr4 148296572 148296586 -54031761 + Charlie7 DNA MER1_type 123 136 -2476 751 153 8 0 chr4 148296591 148296709 -54031638 - FLAM_C SINE Alu -12 131 13 299 256 29 3 chr4 148296788 148296897 -54031450 - MLT1J1 LTR MaLR -20 429 317 384 271 0 10 chr4 148297242 148297338 -54031009 - MER81 DNA DNA -7 107 13 297 0 0 0 chr4 148297947 148297980 -54030367 + (ATG)n Simple_repeat Simple_repeat 2 34 0 2401 67 0 7 chr4 148297991 148298276 -54030071 - AluY SINE Alu -27 284 2 2477 48 41 0 chr4 148299413 148299706 -54028641 + AluY SINE Alu 1 305 -6 197 182 45 0 chr4 148300983 148301027 -54027320 + MIR SINE MIR 109 154 -108 2315 101 14 0 chr4 148301617 148301914 -54026433 + AluSx SINE Alu 1 301 -11 11859 115 30 10 chr4 148302119 148303893 -54024454 - Tigger2 DNA MER2_type 0 2718 909 21 0 0 0 chr4 148304130 148304151 -54024196 + AT_rich Low_complexity Low_complexity 1 21 0 923 149 7 7 chr4 148304914 148305062 -54023285 - Tigger2 DNA MER2_type -1795 923 776 189 147 0 0 chr4 148305062 148305096 -54023251 + (TTTTC)n Simple_repeat Simple_repeat 1 34 0 4201 123 22 72 chr4 148305096 148305863 -54022484 - Tigger2 DNA MER2_type -1925 793 65 524 143 0 0 chr4 148305894 148305971 -54022376 - Tigger2 DNA MER2_type -2640 78 2 1464 189 39 14 chr4 148306034 148306319 -54022028 + AluJo SINE Alu 1 292 -20 263 163 0 0 chr4 148306333 148306382 -54021965 - MIR SINE MIR -1 261 213 2621 59 0 0 chr4 148306399 148306706 -54021641 - AluY SINE Alu -4 307 1 373 235 0 87 chr4 148306707 148306856 -54021491 - MIR SINE MIR -36 226 91 362 330 84 7 chr4 148307658 148307955 -54020392 + L2 LINE L2 2966 3285 -28 1836 167 3 10 chr4 148307957 148308256 -54020091 + AluJo SINE Alu 1 297 -15 23 0 0 0 chr4 148308269 148308292 -54020055 + AT_rich Low_complexity Low_complexity 1 23 0 2626 204 56 64 chr4 148308473 148309195 -54019152 - L1ME2 LINE L1 -10 6154 5370 2160 130 0 3 chr4 148309195 148309502 -54018845 - AluSx SINE Alu -6 306 1 2626 204 56 64 chr4 148309502 148309660 -54018687 - L1ME2 LINE L1 -794 5370 5212 2422 75 19 10 chr4 148310916 148311223 -54017124 + AluY SINE Alu 1 310 -1 357 136 93 185 chr4 148311257 148311343 -54017004 - LTR45B LTR ERV1 0 489 423 557 143 45 18 chr4 148311343 148311455 -54016892 - FLAM_C SINE Alu -16 117 3 357 136 93 185 chr4 148311455 148311530 -54016817 - LTR45B LTR ERV1 -66 423 343 201 178 156 0 chr4 148312160 148312205 -54016142 + MIR SINE MIR 118 169 -93 181 391 0 11 chr4 148312465 148312557 -54015790 + MIR SINE MIR 20 110 -98 222 321 128 0 chr4 148312586 148312695 -54015652 + MIR SINE MIR 29 151 -111 231 36 0 0 chr4 148312949 148312977 -54015370 + (CA)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr4 148313306 148313329 -54015018 + AT_rich Low_complexity Low_complexity 1 23 0 7896 18 0 9 chr4 148313329 148314936 -54013411 - L1PA4 LINE L1 -3 6152 4558 2435 81 13 0 chr4 148314996 148315303 -54013044 + AluSp SINE Alu 1 311 -2 229 54 0 0 chr4 148315356 148315393 -54012954 - Alu SINE Alu 0 302 266 2576 71 0 3 chr4 148315535 148315846 -54012501 - AluY SINE Alu -1 310 1 415 296 120 10 chr4 148315847 148316148 -54012199 + L1MC4 LINE L1 7709 8042 0 356 230 87 40 chr4 148317326 148317452 -54010895 - LTR16A1 LTR ERVL -1 456 325 1531 149 8 0 chr4 148317465 148317700 -54010647 - AluJb SINE Alu 0 312 76 3966 83 35 9 chr4 148317719 148318259 -54010088 - MER41A LTR ERV1 0 554 1 9298 68 20 1 chr4 148318259 148319557 -54008790 - MER41A-int LTR ERV1 -2 5944 4623 6520 169 105 46 chr4 148319550 148320991 -54007356 - HUERS-P1 LTR ERV1 -3691 2572 1047 * 5487 119 56 4 chr4 148320981 148321787 -54006560 - HUERS-P1 LTR ERV1 -5096 850 3 * 4408 71 7 0 chr4 148321894 148322444 -54005903 - MER41A LTR ERV1 0 554 1 474 136 0 49 chr4 148322445 148322526 -54005821 - AluJb SINE Alu -233 79 3 394 276 103 21 chr4 148322547 148322692 -54005655 - LTR16A1 LTR ERVL -154 303 147 22 35 0 0 chr4 148323501 148323530 -54004817 + AT_rich Low_complexity Low_complexity 1 29 0 381 209 100 9 chr4 148326930 148327040 -54001307 - L1ME4a LINE L1 0 6121 6002 2203 96 0 3 chr4 148329770 148330072 -53998275 - AluSp SINE Alu -9 304 4 745 231 107 0 chr4 148330270 148330439 -53997908 + MER5A DNA MER1_type 1 187 -2 280 196 98 71 chr4 148330810 148330922 -53997425 + MER112 DNA MER1_type 139 253 -7 1910 113 60 3 chr4 148331239 148331522 -53996825 - AluSx SINE Alu -13 299 1 2161 203 70 17 chr4 148332403 148332934 -53995413 - L1ME3A LINE L1 -5 6165 5607 234 270 184 13 chr4 148333334 148333432 -53994915 + MIR3 SINE MIR 6 118 -97 369 265 60 60 chr4 148333944 148334095 -53994252 + MIR3 SINE MIR 36 186 -22 1964 145 3 0 chr4 148334397 148334700 -53993647 + AluSx SINE Alu 1 304 -8 238 298 124 58 chr4 148334889 148335010 -53993337 - MIR SINE MIR -50 212 84 207 0 0 0 chr4 148335620 148335643 -53992704 + (A)n Simple_repeat Simple_repeat 1 23 0 843 110 0 0 chr4 148335801 148335919 -53992428 + FLAM_C SINE Alu 1 118 -25 220 167 0 0 chr4 148336819 148336855 -53991492 + L2 LINE L2 3237 3272 0 255 177 0 0 chr4 148336894 148336956 -53991391 + (CTG)n Simple_repeat Simple_repeat 2 63 0 223 228 70 134 chr4 148337640 148337780 -53990567 + L3b LINE CR1 1339 1468 -115 1899 87 10 77 chr4 148337780 148338092 -53990255 + AluSg1 SINE Alu 1 291 -18 223 228 70 134 chr4 148338092 148338122 -53990225 + L3b LINE CR1 1468 1498 -85 225 83 0 62 chr4 148338875 148338923 -53989424 + (CAAAC)n Simple_repeat Simple_repeat 5 49 0 21 57 0 0 chr4 148339076 148339111 -53989236 + AT_rich Low_complexity Low_complexity 1 35 0 299 143 0 0 chr4 148339111 148339160 -53989187 - L1PB1 LINE L1 -7 6144 6096 1715 155 0 24 chr4 148340159 148340455 -53987892 - AluJo SINE Alu -23 289 1 21 36 0 0 chr4 148341465 148341493 -53986854 + GC_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr4 148341521 148341555 -53986792 + GC_rich Low_complexity Low_complexity 1 34 0 207 125 0 0 chr4 148342565 148342605 -53985742 + (CA)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr4 148342621 148342642 -53985705 + AT_rich Low_complexity Low_complexity 1 21 0 763 205 139 6 chr4 148343116 148343282 -53985065 + MER5A DNA MER1_type 2 189 0 240 183 14 70 chr4 148343701 148343772 -53984575 - MIR SINE MIR -10 252 186 2180 94 3 7 chr4 148344725 148345024 -53983323 + AluSx SINE Alu 1 298 -14 234 181 47 150 chr4 148345179 148345306 -53983041 - L1ME4a LINE L1 -38 6083 5970 611 206 35 0 chr4 148345990 148346131 -53982216 + L1ME4a LINE L1 5744 5889 -232 34 72 0 0 chr4 148346260 148346329 -53982018 + AT_rich Low_complexity Low_complexity 1 69 0 1949 126 18 0 chr4 148347933 148348218 -53980129 + AluJo SINE Alu 1 290 -22 831 148 0 15 chr4 148348474 148348609 -53979738 - AluJb SINE Alu -178 134 2 2149 100 0 7 chr4 148348643 148348943 -53979404 + AluSg1 SINE Alu 10 307 -2 1077 143 6 11 chr4 148348947 148349122 -53979225 + AluJb SINE Alu 1 174 -138 216 182 0 0 chr4 148349140 148349184 -53979163 + (TA)n Simple_repeat Simple_repeat 1 44 0 2217 87 0 0 chr4 148349184 148349473 -53978874 - AluSx SINE Alu -23 289 1 223 154 26 0 chr4 148349526 148349565 -53978782 + L2 LINE L2 3221 3260 -12 516 281 0 8 chr4 148351959 148352080 -53976267 + MIR3 SINE MIR 83 202 -6 22 35 0 0 chr4 148352752 148352781 -53975566 + AT_rich Low_complexity Low_complexity 1 29 0 247 94 0 0 chr4 148354436 148354468 -53973879 + Alu SINE Alu 1 32 -271 1087 206 38 21 chr4 148354648 148354886 -53973461 - L1PB4 LINE L1 -2 6154 5913 716 187 96 9 chr4 148355767 148355982 -53972365 + L1MC/D LINE L1 5212 5440 -762 235 330 50 20 chr4 148356004 148356104 -53972243 + L3 LINE CR1 1058 1160 -417 2074 114 0 0 chr4 148357488 148357768 -53970579 + AluSx SINE Alu 1 280 -32 242 313 0 12 chr4 148357883 148357963 -53970384 + L2 LINE L2 3190 3268 -4 850 324 165 21 chr4 148358165 148358293 -53970054 - L3 LINE CR1 -106 1471 1363 2250 109 0 3 chr4 148358293 148358606 -53969741 + AluSq SINE Alu 1 312 -1 850 324 165 21 chr4 148358606 148358998 -53969349 - L3 LINE CR1 -214 1363 876 214 255 49 78 chr4 148358999 148359101 -53969246 - MIR SINE MIR -2 260 162 2308 138 37 5 chr4 148359656 148360034 -53968313 + MLT1B LTR MaLR 1 390 0 1032 257 86 70 chr4 148362281 148362751 -53965596 + MLT1J LTR MaLR 1 511 0 279 287 166 46 chr4 148363177 148363484 -53964863 - L2 LINE L2 -350 2964 2621 258 56 0 0 chr4 148363945 148363981 -53964366 + (TA)n Simple_repeat Simple_repeat 2 37 0 609 209 14 29 chr4 148364670 148364809 -53963538 + L2 LINE L2 3176 3312 -1 495 315 38 29 chr4 148367249 148367487 -53960860 + L3b LINE CR1 1102 1341 -242 527 299 157 15 chr4 148367579 148367840 -53960507 + L2 LINE L2 2314 2611 -703 849 217 0 0 chr4 148367908 148368065 -53960282 - AluJb SINE Alu -19 293 137 660 259 92 23 chr4 148368072 148368532 -53959815 + L2 LINE L2 2696 3272 0 2366 78 0 3 chr4 148369077 148369385 -53958962 + AluSc SINE Alu 1 307 -2 208 0 0 0 chr4 148369651 148369674 -53958673 + (TTTA)n Simple_repeat Simple_repeat 2 100 0 1661 160 21 18 chr4 148369674 148369956 -53958391 - AluJo SINE Alu -29 283 1 243 296 22 67 chr4 148371045 148371180 -53957167 - MIR SINE MIR -50 212 84 212 289 31 47 chr4 148373258 148373386 -53954961 - MIR SINE MIR 0 262 137 387 256 12 0 chr4 148373397 148373479 -53954868 - L2 LINE L2 -29 3243 3161 1683 170 10 24 chr4 148374672 148374960 -53953387 + AluJo SINE Alu 7 290 -22 207 0 0 0 chr4 148375601 148375624 -53952723 + (TA)n Simple_repeat Simple_repeat 2 24 0 25 31 0 0 chr4 148375977 148376009 -53952338 + AT_rich Low_complexity Low_complexity 1 32 0 2116 121 6 19 chr4 148376205 148376518 -53951829 + AluSx SINE Alu 2 310 -2 824 189 139 0 chr4 148376886 148377066 -53951281 + MER3 DNA MER1_type 1 205 -4 1113 110 24 0 chr4 148378127 148378291 -53950056 - L1MB4 LINE L1 -1 6179 6012 414 0 0 0 chr4 148378324 148378370 -53949977 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 1165 253 27 20 chr4 148379423 148379719 -53948628 - L1MB4 LINE L1 -308 5813 5516 29 47 0 0 chr4 148379807 148379850 -53948497 + AT_rich Low_complexity Low_complexity 1 43 0 2060 80 0 22 chr4 148380309 148380584 -53947763 + AluY SINE Alu 7 275 -36 184 327 168 34 chr4 148382079 148382287 -53946060 + L2 LINE L2 2454 2689 -625 2165 120 23 0 chr4 148382350 148382649 -53945698 + AluSx SINE Alu 1 306 -6 520 287 253 16 chr4 148384949 148385329 -53943018 + L3 LINE CR1 406 875 -702 1502 92 0 5 chr4 148385451 148385646 -53942701 + AluSg/x SINE Alu 114 307 -5 2678 90 23 3 chr4 148388831 148389185 -53939162 - MER46B DNA MER2_type 0 236 1 621 179 130 37 chr4 148389728 148389890 -53938457 - MER104 DNA MER2_type -3 177 1 2689 145 30 13 chr4 148390591 148391059 -53937288 - L1MB4 LINE L1 0 6180 5705 2189 115 0 20 chr4 148391429 148391733 -53936614 + AluSx SINE Alu 2 299 -13 243 264 0 0 chr4 148392300 148392353 -53935994 - L2 LINE L2 -5 3267 3215 201 270 54 0 chr4 148392438 148392512 -53935835 - MIR3 SINE MIR -7 201 124 2594 58 0 6 chr4 148392944 148393256 -53935091 - AluY SINE Alu 0 311 2 258 306 32 48 chr4 148394517 148394641 -53933706 - 7SK RNA RNA -68 125 4 198 0 0 0 chr4 148397054 148397076 -53931271 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 335 242 203 0 chr4 148397153 148397281 -53931066 + MIR SINE MIR 89 242 -20 233 194 32 108 chr4 148397840 148397933 -53930414 + L1MC5 LINE L1 7709 7794 -167 724 49 10 10 chr4 148398203 148398305 -53930042 + (GAAA)n Simple_repeat Simple_repeat 3 104 0 234 268 72 13 chr4 148398305 148398438 -53929909 + L1MC4 LINE L1 7822 8041 -1 437 165 0 59 chr4 148398485 148398570 -53929777 - MER116 DNA Mariner 0 80 1 21 82 0 0 chr4 148399125 148399174 -53929173 + AT_rich Low_complexity Low_complexity 1 49 0 27 0 0 0 chr4 148400267 148400294 -53928053 + AT_rich Low_complexity Low_complexity 1 27 0 686 135 203 43 chr4 148401525 148401688 -53926659 - MER53 DNA DNA 0 189 1 216 86 0 0 chr4 148401938 148401973 -53926374 + (TG)n Simple_repeat Simple_repeat 1 35 0 275 325 143 0 chr4 148402974 148403100 -53925247 + MIR SINE MIR 49 192 -70 826 186 100 0 chr4 148403391 148403531 -53924816 + AluJb SINE Alu 138 291 -21 450 310 66 15 chr4 148403989 148404186 -53924161 - MIR SINE MIR -33 229 23 462 321 83 0 chr4 148404262 148404430 -53923917 + MIR3 SINE MIR 4 185 -23 1194 429 64 0 chr4 148404536 148404816 -53923531 - AluSq SINE Alu -5 298 1 208 292 42 42 chr4 148404841 148404913 -53923434 + L3 LINE CR1 1500 1571 -6 2036 128 0 16 chr4 148405147 148405459 -53922888 + AluSq SINE Alu 2 308 -5 327 286 58 65 chr4 148405721 148406015 -53922332 + L1ME4a LINE L1 4374 4665 -1481 1144 263 110 23 chr4 148406518 148407209 -53921138 + L1ME4a LINE L1 5294 6039 -82 309 283 20 30 chr4 148407362 148407461 -53920886 + MIR SINE MIR 47 144 -64 186 43 0 0 chr4 148407535 148407558 -53920789 + (TG)n Simple_repeat Simple_repeat 2 24 0 306 148 0 0 chr4 148408450 148408504 -53919843 + (TTCA)n Simple_repeat Simple_repeat 2 55 0 180 125 0 0 chr4 148409175 148409207 -53919140 + (TG)n Simple_repeat Simple_repeat 2 33 0 309 51 0 0 chr4 148410110 148410149 -53918198 + (CA)n Simple_repeat Simple_repeat 1 39 0 2034 141 10 0 chr4 148410435 148410739 -53917608 - AluJo SINE Alu -5 307 1 536 271 82 72 chr4 148411018 148411481 -53916866 + MLT1J LTR MaLR 1 510 -1 203 261 11 65 chr4 148411528 148411620 -53916727 + MER91A DNA MER1_type 2 88 -108 4262 268 88 54 chr4 148411935 148412231 -53916116 + HAL1 LINE L1 4 289 -2218 1680 151 61 4 chr4 148412231 148412509 -53915838 + AluJo SINE Alu 2 295 -17 4262 268 88 54 chr4 148412509 148414254 -53914093 + HAL1 LINE L1 289 2114 -393 321 47 0 0 chr4 148414263 148414306 -53914041 + (CA)n Simple_repeat Simple_repeat 2 44 0 567 257 80 40 chr4 148414306 148414555 -53913792 + HAL1 LINE L1 2153 2411 -96 744 224 78 78 chr4 148415577 148415822 -53912525 - MIR SINE MIR 0 262 18 183 80 0 0 chr4 148417470 148417495 -53910852 + (TGGA)n Simple_repeat Simple_repeat 1 25 0 253 324 124 62 chr4 148417751 148418155 -53910192 + L2 LINE L2 2527 2955 -359 1047 189 11 21 chr4 148418226 148418416 -53909931 - MER5A DNA MER1_type -1 188 1 225 356 40 0 chr4 148418940 148419041 -53909306 + MIR SINE MIR 158 262 0 1030 278 27 24 chr4 148420885 148421216 -53907131 - L1ME4a LINE L1 -217 5904 5573 2422 114 0 18 chr4 148421464 148421807 -53906540 + MER1B DNA MER1_type 1 337 0 774 189 0 0 chr4 148422311 148422535 -53905812 + (CAT)n Simple_repeat Simple_repeat 1 224 0 721 234 30 48 chr4 148423882 148424113 -53904234 + L2 LINE L2 3087 3313 0 197 335 123 13 chr4 148428726 148428881 -53899466 - L2 LINE L2 -14 3299 3128 186 43 0 0 chr4 148428959 148428982 -53899365 + (T)n Simple_repeat Simple_repeat 1 23 0 539 169 0 0 chr4 148429136 148429219 -53899128 + AluSg/x SINE Alu 194 276 -33 959 95 0 48 chr4 148429226 148429415 -53898932 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 496 186 17 0 chr4 148429419 148429537 -53898810 + GA-rich Low_complexity Low_complexity 1 120 0 210 266 136 65 chr4 148429548 148429762 -53898585 - L2 LINE L2 -236 3036 2808 609 349 134 13 chr4 148430061 148430531 -53897816 + L3 LINE CR1 1044 1570 -7 2620 50 0 0 chr4 148430660 148430963 -53897384 - AluY SINE Alu -8 303 1 2438 74 0 7 chr4 148432046 148432342 -53896005 - AluSg SINE Alu -16 294 1 2029 136 6 28 chr4 148432344 148432661 -53895686 - AluSx SINE Alu -2 310 1 485 163 10 31 chr4 148434787 148434885 -53893462 - MER5A DNA MER1_type -80 109 14 2338 112 3 0 chr4 148437090 148437402 -53890945 + AluSp SINE Alu 1 313 0 2311 77 3 7 chr4 148437465 148437781 -53890566 + AluY SINE Alu 1 315 0 2336 103 0 0 chr4 148437887 148438189 -53890158 + AluSx SINE Alu 1 302 -10 202 211 18 35 chr4 148442595 148442652 -53885695 - MIR SINE MIR -109 153 98 1747 127 24 0 chr4 148442760 148443013 -53885334 - AluSx SINE Alu -4 308 50 2251 112 3 10 chr4 148443015 148443329 -53885018 - AluSx SINE Alu 0 312 1 378 121 0 0 chr4 148445212 148445278 -53883069 + (TC)n Simple_repeat Simple_repeat 2 67 0 26 30 0 0 chr4 148446549 148446582 -53881765 + AT_rich Low_complexity Low_complexity 1 33 0 2098 134 0 10 chr4 148446588 148446894 -53881453 - AluJo SINE Alu -7 305 3 278 286 26 0 chr4 148447345 148447422 -53880925 + CT-rich Low_complexity Low_complexity 3 81 0 183 139 0 0 chr4 148448145 148448181 -53880166 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 245 247 0 14 chr4 148448741 148448814 -53879533 + L1ME4a LINE L1 5983 6054 -67 577 228 8 8 chr4 148450576 148450703 -53877644 - MER94 DNA DNA 0 134 8 1548 159 0 37 chr4 148450783 148451054 -53877293 - AluJb SINE Alu -13 299 39 2289 107 3 10 chr4 148452654 148452964 -53875383 - AluSx SINE Alu -4 308 1 209 260 21 83 chr4 148453114 148453210 -53875137 + MIR SINE MIR 47 136 -126 528 214 39 114 chr4 148453982 148454061 -53874286 + MIR SINE MIR 30 113 -149 2352 87 3 6 chr4 148454061 148454372 -53873975 - AluSx SINE Alu -2 310 1 528 214 39 114 chr4 148454372 148454524 -53873823 + MIR SINE MIR 113 259 -3 355 304 16 16 chr4 148454526 148454651 -53873696 - MIR3 SINE MIR -45 163 39 262 282 69 30 chr4 148456317 148456448 -53871899 + L2 LINE L2 3136 3271 -1 1156 283 81 77 chr4 148457822 148458678 -53869669 - L3 LINE CR1 -96 1481 623 180 0 0 0 chr4 148458702 148458722 -53869625 + (T)n Simple_repeat Simple_repeat 1 20 0 1804 118 79 7 chr4 148459477 148459756 -53868591 - AluJb SINE Alu -13 299 1 499 275 50 0 chr4 148459854 148460014 -53868333 - MIR SINE MIR 0 262 95 278 272 10 39 chr4 148460075 148460178 -53868169 - LTR16B LTR ERVL 0 464 365 256 176 14 14 chr4 148461228 148461302 -53867045 + (TA)n Simple_repeat Simple_repeat 1 74 0 297 0 0 0 chr4 148461727 148461760 -53866587 + (TG)n Simple_repeat Simple_repeat 2 34 0 681 189 32 81 chr4 148462113 148462177 -53866170 - MER5B DNA MER1_type 0 178 112 2258 117 3 3 chr4 148462177 148462486 -53865861 + AluSq SINE Alu 1 309 -4 681 189 32 81 chr4 148462486 148462606 -53865741 - MER5B DNA MER1_type -66 112 3 194 288 152 38 chr4 148462828 148462960 -53865387 + L2 LINE L2 3126 3272 0 572 299 37 28 chr4 148463060 148463197 -53865150 + MIR SINE MIR 13 154 -108 1640 117 0 0 chr4 148463197 148463420 -53864927 + AluSg/x SINE Alu 81 303 -9 572 299 37 28 chr4 148463420 148463496 -53864851 + MIR SINE MIR 154 228 -34 2083 109 48 0 chr4 148463593 148463886 -53864461 - AluSp SINE Alu -6 307 1 207 0 0 0 chr4 148464082 148464105 -53864242 + (T)n Simple_repeat Simple_repeat 1 23 0 261 0 0 0 chr4 148464252 148464281 -53864066 + (T)n Simple_repeat Simple_repeat 1 29 0 192 40 0 0 chr4 148464812 148464837 -53863510 + (T)n Simple_repeat Simple_repeat 1 25 0 681 258 162 15 chr4 148465047 148465318 -53863029 + MER115 DNA AcHobo 10 320 -373 734 228 74 0 chr4 148465437 148465626 -53862721 + MER115 DNA AcHobo 488 690 -3 239 311 44 37 chr4 148466223 148466358 -53861989 + L2 LINE L2 3172 3307 -6 298 300 243 0 chr4 148466772 148466964 -53861383 - MIR SINE MIR 0 262 29 235 184 0 184 chr4 148467053 148467156 -53861191 - MIR SINE MIR -108 154 71 184 317 0 17 chr4 148467342 148467402 -53860945 - L2 LINE L2 -14 3258 3200 595 324 24 24 chr4 148467812 148468062 -53860285 + MIR SINE MIR 2 251 -11 270 292 281 5 chr4 148469250 148469442 -53858905 + MIR SINE MIR 6 250 -12 1072 122 4 168 chr4 148469472 148469734 -53858613 - MER20 DNA MER1_type 0 219 1 965 132 112 0 chr4 148469976 148470128 -53858219 - AluJb SINE Alu -19 293 125 22 35 0 0 chr4 148471255 148471284 -53857063 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr4 148471528 148471555 -53856792 + AT_rich Low_complexity Low_complexity 1 27 0 2110 114 0 14 chr4 148472122 148472441 -53855906 + AluSx SINE Alu 1 315 0 2515 167 98 14 chr4 148472764 148473273 -53855074 + MLT1F1 LTR MaLR 14 565 -2 25 75 0 0 chr4 148473620 148473673 -53854674 + AT_rich Low_complexity Low_complexity 1 53 0 216 0 0 0 chr4 148473911 148473935 -53854412 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 499 332 30 34 chr4 148474033 148474127 -53854220 - MIR SINE MIR -21 241 148 2497 76 0 0 chr4 148474127 148474429 -53853918 - AluY SINE Alu -9 302 1 499 332 30 34 chr4 148474429 148474569 -53853778 - MIR SINE MIR -114 148 8 252 0 0 0 chr4 148475243 148475271 -53853076 + (A)n Simple_repeat Simple_repeat 1 28 0 1819 157 6 33 chr4 148475336 148475667 -53852680 + MER33 DNA MER1_type 3 324 0 2096 154 0 0 chr4 148478571 148478883 -53849464 + AluSx SINE Alu 1 312 0 240 196 20 0 chr4 148478901 148478952 -53849395 + (TGG)n Simple_repeat Simple_repeat 1 52 0 391 286 14 54 chr4 148478973 148479120 -53849227 + MER5A DNA MER1_type 49 189 0 2175 119 3 13 chr4 148479218 148479530 -53848817 + AluSx SINE Alu 1 309 -3 3319 272 94 103 chr4 148480149 148481033 -53847314 + HAL1 LINE L1 17 907 -1600 1994 111 35 7 chr4 148481033 148481321 -53847026 - AluSx SINE Alu -16 296 1 3319 272 94 103 chr4 148481321 148482017 -53846330 + HAL1 LINE L1 907 1608 -899 2278 116 0 0 chr4 148482017 148482340 -53846007 + AluSx SINE Alu 1 323 0 3319 272 94 103 chr4 148482340 148483266 -53845081 + HAL1 LINE L1 1608 2505 -2 21 0 0 0 chr4 148483312 148483333 -53845014 + AT_rich Low_complexity Low_complexity 1 21 0 2087 92 41 7 chr4 148483340 148483633 -53844714 - AluSq SINE Alu -10 303 1 183 267 9 138 chr4 148484292 148484408 -53843939 - L2 LINE L2 -11 3261 3161 1239 79 5 53 chr4 148484494 148484568 -53843779 + L1MA4A LINE L1 6113 6189 -114 1721 177 3 23 chr4 148484568 148484873 -53843474 + AluJo SINE Alu 1 299 -13 1239 79 5 53 chr4 148484873 148484987 -53843360 + L1MA4A LINE L1 6189 6292 -11 327 258 17 83 chr4 148485010 148485090 -53843257 + HAL1 LINE L1 1189 1260 -1247 2376 72 0 31 chr4 148485090 148485410 -53842937 + AluY SINE Alu 1 310 -1 327 258 17 83 chr4 148485410 148485449 -53842898 + HAL1 LINE L1 1260 1300 -1207 324 214 120 94 chr4 148485807 148486074 -53842273 - L1ME4a LINE L1 -15 6106 5833 432 55 0 0 chr4 148488933 148488988 -53839359 + (CTG)n Simple_repeat Simple_repeat 1 55 0 666 58 0 0 chr4 148489352 148489439 -53838908 + (CTG)n Simple_repeat Simple_repeat 3 89 0 2060 126 3 0 chr4 148490723 148491016 -53837331 - AluSx SINE Alu -8 304 11 338 321 82 30 chr4 148491234 148491502 -53836845 + L2 LINE L2 1931 2212 -1102 1929 84 0 23 chr4 148491804 148492067 -53836280 + AluY SINE Alu 45 301 -10 226 167 0 0 chr4 148492220 148492262 -53836085 + U5 snRNA snRNA 1 42 -74 443 286 0 85 chr4 148492267 148492456 -53835891 + L2 LINE L2 2909 3081 -191 254 229 51 68 chr4 148492565 148492683 -53835664 + L2 LINE L2 3157 3272 0 2060 111 4 7 chr4 148493345 148493683 -53834664 + AluSc SINE Alu 1 337 0 222 238 0 0 chr4 148494309 148494351 -53833996 + MIR SINE MIR 20 61 -201 295 229 303 0 chr4 148494407 148494516 -53833831 + L2 LINE L2 3172 3313 0 * 492 290 40 45 chr4 148494514 148494690 -53833657 + MIR SINE MIR 88 262 0 304 22 44 0 chr4 148495724 148495769 -53832578 + (TG)n Simple_repeat Simple_repeat 1 47 0 240 196 0 0 chr4 148495769 148495820 -53832527 + GA-rich Low_complexity Low_complexity 2 52 0 229 299 109 109 chr4 148496343 148496490 -53831857 - MIR SINE MIR -81 181 35 246 325 90 69 chr4 148496693 148497176 -53831171 + L2 LINE L2 2560 3054 -218 189 234 62 133 chr4 148498065 148498193 -53830154 + MER5B DNA MER1_type 2 120 -58 401 254 290 5 chr4 148499978 148500171 -53828176 - MIR SINE MIR -13 249 2 375 141 0 0 chr4 148501371 148501435 -53826912 + (CA)n Simple_repeat Simple_repeat 2 65 0 588 219 114 0 chr4 148502304 148502418 -53825929 - FLAM_C SINE Alu -5 128 2 944 144 73 27 chr4 148502686 148502872 -53825475 + MLT1B LTR MaLR 8 184 -206 1265 156 46 161 chr4 148502872 148503282 -53825065 - MLT1A1 LTR MaLR -2 363 1 944 144 73 27 chr4 148503282 148503402 -53824945 + MLT1B LTR MaLR 184 387 -3 236 343 160 39 chr4 148503522 148503834 -53824513 - L2 LINE L2 -23 3249 2900 1828 147 88 28 chr4 148503841 148504160 -53824187 - MER7A DNA MER2_type -10 336 1 2355 91 3 3 chr4 148504355 148504653 -53823694 + AluY SINE Alu 1 298 -13 2236 147 30 45 chr4 148504705 148505101 -53823246 - MLT1B LTR MaLR 0 390 1 606 190 9 69 chr4 148505285 148505401 -53822946 - FLAM_A SINE Alu -33 109 1 564 211 18 18 chr4 148506366 148506475 -53821872 + MIR3 SINE MIR 79 187 -21 182 291 0 81 chr4 148506727 148506813 -53821534 - L2 LINE L2 -4 3309 3231 216 310 28 0 chr4 148508270 148508341 -53820006 + MIR SINE MIR 76 148 -114 2106 126 20 0 chr4 148508709 148509003 -53819344 + AluSg SINE Alu 3 302 -8 821 126 22 15 chr4 148509331 148509466 -53818881 + MER5A DNA MER1_type 30 165 -24 704 175 0 120 chr4 148509518 148509701 -53818646 + MER3 DNA MER1_type 49 209 0 822 115 0 23 chr4 148510016 148510146 -53818201 - L1MB3 LINE L1 -6 6177 6051 1575 186 21 4 chr4 148510248 148510527 -53817820 + MLT1A1 LTR MaLR 82 365 0 1232 157 77 13 chr4 148510527 148510762 -53817585 - L1MB3 LINE L1 -380 5791 5542 192 331 15 73 chr4 148510853 148510989 -53817358 - L2 LINE L2 -1857 1457 1330 2077 208 19 38 chr4 148511067 148511543 -53816804 + MLT1C LTR MaLR 1 467 0 370 252 165 0 chr4 148512870 148512985 -53815362 - L2 LINE L2 -1 3271 3138 501 193 37 9 chr4 148514611 148514720 -53813627 - MIR SINE MIR -75 187 76 190 304 38 38 chr4 148515309 148515388 -53812959 + MIR SINE MIR 117 195 -67 1471 291 52 26 chr4 148515877 148516451 -53811896 + L3 LINE CR1 977 1565 -12 680 285 132 36 chr4 148516656 148517355 -53810992 + L2 LINE L2 2558 3313 0 536 322 60 5 chr4 148517702 148517901 -53810446 + L3b LINE CR1 1371 1580 -3 207 0 0 0 chr4 148522214 148522237 -53806110 + (TG)n Simple_repeat Simple_repeat 2 24 0 2100 124 0 0 chr4 148523819 148524125 -53804222 - AluSx SINE Alu 0 306 1 2355 87 0 6 chr4 148524912 148525223 -53803124 + AluY SINE Alu 1 309 -2 1323 190 80 59 chr4 148525272 148525661 -53802686 - L1MD3 LINE L1 -10 7985 7589 937 143 0 0 chr4 148525686 148525819 -53802528 - AluSq/x SINE Alu -179 133 1 3502 247 36 10 chr4 148525828 148526797 -53801550 - L1MC4 LINE L1 -548 7494 6501 188 352 73 68 chr4 148526877 148527275 -53801072 - L2 LINE L2 0 3272 2873 655 153 9 9 chr4 148529696 148529807 -53798540 - MER45A DNA AcHobo 0 178 68 2224 86 0 30 chr4 148530323 148530625 -53797722 + AluSq SINE Alu 1 293 -20 283 192 26 0 chr4 148531709 148531787 -53796560 + GA-rich Low_complexity Low_complexity 1 80 0 465 298 6 0 chr4 148532471 148532639 -53795708 + (TG)n Simple_repeat Simple_repeat 1 169 0 350 276 0 8 chr4 148532683 148532944 -53795403 + (TG)n Simple_repeat Simple_repeat 1 258 0 4605 126 35 44 chr4 148534324 148535112 -53793235 - L1MA9 LINE L1 0 6312 5532 1034 165 0 24 chr4 148535159 148535329 -53793018 + FAM SINE Alu 1 43 -6 2124 122 7 3 chr4 148535988 148536283 -53792064 - AluSx SINE Alu -16 296 1 554 299 27 27 chr4 148536871 148537058 -53791289 - MIR3 SINE MIR -12 196 10 253 274 163 53 chr4 148537785 148537975 -53790372 + L2 LINE L2 2567 2777 -537 243 336 103 0 chr4 148538252 148538359 -53789988 + L2 LINE L2 3182 3299 -14 2388 80 0 3 chr4 148538360 148538659 -53789688 - AluSg SINE Alu -12 298 1 330 306 51 0 chr4 148538978 148539076 -53789271 + MIR SINE MIR 51 153 -109 228 111 0 0 chr4 148540138 148540174 -53788173 + (TGG)n Simple_repeat Simple_repeat 1 36 0 2032 125 10 3 chr4 148540447 148540744 -53787603 + AluSq SINE Alu 1 299 -14 354 23 0 0 chr4 148540767 148540810 -53787537 + (CAGG)n Simple_repeat Simple_repeat 2 44 0 2350 88 0 7 chr4 148542460 148542765 -53785582 - AluSc SINE Alu -6 303 1 3701 10 0 5 chr4 148542776 148543173 -53785174 - L1PA2 LINE L1 -2 6153 5759 4405 10 0 0 chr4 148543173 148543666 -53784681 + L1PA2 LINE L1 5271 5763 -392 27 0 0 0 chr4 148543973 148544000 -53784347 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr4 148544325 148544347 -53784000 + AT_rich Low_complexity Low_complexity 1 22 0 333 0 0 0 chr4 148545485 148545522 -53782825 + (CA)n Simple_repeat Simple_repeat 1 37 0 252 0 0 0 chr4 148545521 148545549 -53782798 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 236 102 82 41 chr4 148546272 148546321 -53782026 + MIR SINE MIR 77 127 -135 2162 94 7 7 chr4 148546416 148546741 -53781606 + AluSp SINE Alu 2 313 0 604 193 146 12 chr4 148547375 148547546 -53780801 - MIR SINE MIR -59 203 10 2315 85 3 7 chr4 148547605 148547910 -53780437 - AluSc SINE Alu -5 304 1 2476 160 53 33 chr4 148548344 148548646 -53779701 + MLT2C2 LTR ERVL 1 316 -148 2281 90 7 3 chr4 148548646 148548935 -53779412 - AluSg SINE Alu -20 290 1 2476 160 53 33 chr4 148548935 148549087 -53779260 + MLT2C2 LTR ERVL 316 464 0 222 261 0 0 chr4 148549706 148549752 -53778595 + polypyrimidine Low_complexity Low_complexity 1 46 0 2158 130 0 3 chr4 148550477 148550784 -53777563 + AluSq SINE Alu 1 306 -7 585 218 9 22 chr4 148551275 148551410 -53776937 + MLT1J2 LTR MaLR 59 218 -271 2037 118 24 0 chr4 148551945 148552232 -53776115 + AluSx SINE Alu 7 300 -12 334 303 101 0 chr4 148552581 148552700 -53775647 - MER5A DNA MER1_type -58 131 1 759 190 0 0 chr4 148553283 148553404 -53774943 - FLAM_A SINE Alu -10 132 12 488 182 10 0 chr4 148553405 148553504 -53774843 + L1MA4A LINE L1 6198 6297 -6 192 200 0 0 chr4 148553520 148553565 -53774782 + (TAA)n Simple_repeat Simple_repeat 2 46 0 342 260 40 30 chr4 148554448 148554548 -53773799 + MLT1J1 LTR MaLR 250 350 -96 388 276 54 47 chr4 148554672 148554824 -53773523 + MIR SINE MIR 49 194 -63 509 278 32 0 chr4 148555603 148555729 -53772618 - MIR SINE MIR -120 142 13 582 299 27 5 chr4 148555784 148555968 -53772379 - MIR SINE MIR -34 228 41 325 317 61 88 chr4 148556923 148557185 -53771162 - L2 LINE L2 0 3272 3018 380 148 16 0 chr4 148557787 148557848 -53770499 + LTR40a LTR ERVL 458 519 0 1845 141 0 31 chr4 148560428 148560718 -53767629 + AluJb SINE Alu 1 281 -31 406 163 35 0 chr4 148561224 148561310 -53767037 + L1MC2 LINE L1 6255 6343 -1 722 173 0 0 chr4 148561734 148561844 -53766503 + FLAM_A SINE Alu 1 110 -32 333 277 15 8 chr4 148561919 148562020 -53766327 - MER5A DNA MER1_type -83 106 4 4048 75 17 8 chr4 148562656 148563175 -53765172 + L1PA8A LINE L1 5607 6130 -1 215 167 21 0 chr4 148563290 148563338 -53765009 + T-rich Low_complexity Low_complexity 5 53 0 733 232 6 57 chr4 148563417 148563594 -53764753 + MER63A DNA MER1_type 1 168 -42 2470 78 0 0 chr4 148564534 148564830 -53763517 + AluY SINE Alu 1 296 -15 216 0 0 0 chr4 148565185 148565209 -53763138 + (TG)n Simple_repeat Simple_repeat 2 25 0 402 310 64 9 chr4 148565379 148565800 -53762547 + L1M4 LINE L1 4207 4665 -1481 2263 82 0 13 chr4 148566504 148566807 -53761540 - AluSq SINE Alu -14 299 1 256 220 0 0 chr4 148567659 148567709 -53760638 - MER45A DNA AcHobo -3 175 126 958 114 8 0 chr4 148567710 148567842 -53760505 + AluSp SINE Alu 1 133 -180 2198 113 0 0 chr4 148567845 148568145 -53760202 + AluSx SINE Alu 1 300 -12 658 200 15 0 chr4 148568147 148568277 -53760070 - MER45A DNA AcHobo -46 132 1 233 259 0 0 chr4 148568649 148568703 -53759644 - MIR SINE MIR -22 240 187 436 270 68 25 chr4 148569208 148569371 -53758976 + MIR SINE MIR 15 184 -78 382 339 6 24 chr4 148569705 148569870 -53758477 + MIR3 SINE MIR 26 187 -21 2281 113 0 0 chr4 148570205 148570506 -53757841 + AluSx SINE Alu 1 301 -11 1573 129 43 32 chr4 148570823 148570955 -53757392 + MER2 DNA MER2_type 1 130 -215 2438 84 3 0 chr4 148570955 148571254 -53757093 - AluSp SINE Alu -13 300 1 1573 129 43 32 chr4 148571254 148571400 -53756947 + MER2 DNA MER2_type 130 282 -63 1952 121 0 0 chr4 148571500 148571764 -53756583 + AluSx SINE Alu 35 298 -14 1521 199 36 99 chr4 148571798 148571940 -53756407 - L1M4 LINE L1 -875 5271 5122 2368 81 0 7 chr4 148571940 148572236 -53756111 + AluSq SINE Alu 1 294 -19 1521 199 36 99 chr4 148572236 148572779 -53755568 - L1M4 LINE L1 -1024 5122 4364 1610 189 18 0 chr4 148572779 148573060 -53755287 + AluJo SINE Alu 1 286 -26 1521 199 36 99 chr4 148573060 148573156 -53755191 - L1M4 LINE L1 -1782 4364 4263 183 42 0 0 chr4 148573156 148573180 -53755167 + (TGG)n Simple_repeat Simple_repeat 1 24 0 485 313 17 17 chr4 148573664 148573840 -53754507 + MER5B DNA MER1_type 3 178 0 2055 116 0 0 chr4 148573965 148574240 -53754107 + AluSx SINE Alu 21 295 -17 481 244 153 24 chr4 148574329 148574538 -53753809 - MER74A LTR ERVL 0 558 323 436 144 0 38 chr4 148574642 148574774 -53753573 + (TA)n Simple_repeat Simple_repeat 2 128 0 2024 116 24 7 chr4 148574783 148575075 -53753272 - AluSx SINE Alu -15 297 1 483 244 8 17 chr4 148576115 148576234 -53752113 + L2 LINE L2 3196 3313 0 2394 97 3 3 chr4 148577954 148578264 -53750083 + AluSp SINE Alu 1 310 -3 2524 88 39 39 chr4 148579294 148579702 -53748645 - L1MA8 LINE L1 -5 6286 5879 200 294 118 12 chr4 148580932 148581017 -53747330 + MIR SINE MIR 61 154 -108 237 292 50 42 chr4 148581071 148581191 -53747156 + MIR3 SINE MIR 36 156 -52 2273 114 0 0 chr4 148583742 148584050 -53744297 + AluSx SINE Alu 1 308 -4 468 252 0 0 chr4 148584256 148584367 -53743980 - MIR SINE MIR 0 262 152 459 267 45 13 chr4 148585028 148585207 -53743140 + L1M4 LINE L1 49 512 -6343 330 302 72 14 chr4 148585596 148585735 -53742612 + L1M4 LINE L1 1055 1201 -5654 1790 239 88 93 chr4 148585794 148587465 -53740882 + L1M4 LINE L1 1190 3006 -4132 204 97 0 0 chr4 148587473 148587504 -53740843 + (TA)n Simple_repeat Simple_repeat 2 32 0 2213 109 7 0 chr4 148587539 148587843 -53740504 - AluSc SINE Alu -3 306 1 3624 261 114 33 chr4 148587843 148587913 -53740434 + L1M4 LINE L1 2946 3009 -3948 198 0 0 0 chr4 148587913 148587935 -53740412 + (CA)n Simple_repeat Simple_repeat 2 23 0 3624 261 114 33 chr4 148587935 148589690 -53738657 + L1M4 LINE L1 3009 4918 -2039 414 0 0 0 chr4 148591115 148591161 -53737186 + (CA)n Simple_repeat Simple_repeat 2 47 0 324 115 0 0 chr4 148591609 148591643 -53736704 + (GAAAA)n Simple_repeat Simple_repeat 2 38 -15 2050 108 3 96 chr4 148591643 148591975 -53736372 + AluSx SINE Alu 2 302 0 324 115 0 0 chr4 148591975 148591992 -53736355 + (GAAAA)n Simple_repeat Simple_repeat 37 53 0 681 263 105 0 chr4 148592192 148592401 -53735946 - MIR SINE MIR -21 241 11 180 260 100 0 chr4 148593588 148593638 -53734709 + MIR SINE MIR 45 99 -109 226 330 86 84 chr4 148593699 148594081 -53734266 - L2 LINE L2 -83 3189 2807 238 245 143 20 chr4 148594436 148594534 -53733813 + L2 LINE L2 3180 3289 -24 21 36 0 0 chr4 148595315 148595343 -53733004 + AT_rich Low_complexity Low_complexity 1 28 0 1326 97 5 16 chr4 148595738 148595924 -53732423 - L1PA11 LINE L1 0 6174 5991 540 271 11 28 chr4 148596043 148596224 -53732123 + MARNA DNA Mariner 139 316 -270 772 192 0 0 chr4 148596294 148596440 -53731907 + L1ME1 LINE L1 6018 6163 -3 2554 60 0 0 chr4 148597797 148598096 -53730251 - AluY SINE Alu -12 299 1 365 308 25 8 chr4 148598237 148598357 -53729990 + MIR3 SINE MIR 76 197 -11 348 183 24 37 chr4 148598881 148598963 -53729384 + L2 LINE L2 3004 3084 -229 729 230 16 78 chr4 148599001 148599258 -53729089 + L2 LINE L2 3072 3312 -1 855 222 42 28 chr4 148600356 148600476 -53727871 + MER20 DNA MER1_type 1 127 -92 2096 156 55 9 chr4 148600476 148600822 -53727525 + MLT1A1 LTR MaLR 1 362 -3 855 222 42 28 chr4 148600822 148600917 -53727430 + MER20 DNA MER1_type 127 219 0 2246 112 0 0 chr4 148601142 148601454 -53726893 + AluSx SINE Alu 1 312 0 410 243 74 63 chr4 148601513 148601702 -53726645 - MIR3 SINE MIR -2 206 16 404 330 91 6 chr4 148602595 148602771 -53725576 - MIR SINE MIR 0 262 72 1376 160 59 116 chr4 148603068 148603455 -53724892 + MLT1A1 LTR MaLR 1 365 0 552 212 6 97 chr4 148604195 148604360 -53723987 - L2 LINE L2 0 3313 3164 195 42 0 0 chr4 148604361 148604385 -53723962 + (TAA)n Simple_repeat Simple_repeat 1 24 0 5005 171 119 93 chr4 148604551 148604583 -53723764 - L1MC3 LINE L1 0 7785 7755 2111 168 20 43 chr4 148604583 148604982 -53723365 - MLT1B LTR MaLR 0 390 1 5005 171 119 93 chr4 148604982 148605580 -53722767 - L1MC3 LINE L1 -30 7755 7174 237 203 16 31 chr4 148605580 148605644 -53722703 - MLT1H LTR MaLR -401 148 86 5005 171 119 93 chr4 148605644 148606931 -53721416 - L1MC3 LINE L1 -611 7174 5884 200 298 75 32 chr4 148606941 148607013 -53721334 - L2 LINE L2 -1311 2003 1925 1386 172 8 17 chr4 148607013 148607251 -53721096 - MER46A DNA MER2_type 0 236 1 200 298 75 32 chr4 148607251 148607272 -53721075 - L2 LINE L2 -1389 1925 1906 1257 315 126 11 chr4 148607280 148607979 -53720368 - L2 LINE L2 -1971 1343 565 2106 140 92 3 chr4 148608142 148608499 -53719848 - MLT2C1 LTR ERVL -8 389 1 2371 89 6 6 chr4 148611290 148611603 -53716744 + AluSq SINE Alu 1 313 0 2239 91 0 0 chr4 148611620 148611907 -53716440 + AluSx SINE Alu 24 310 -2 617 216 47 0 chr4 148612189 148612337 -53716010 + L1ME2 LINE L1 6001 6155 -9 348 43 0 0 chr4 148613391 148613437 -53714910 + (CA)n Simple_repeat Simple_repeat 1 46 0 294 29 0 0 chr4 148613436 148613471 -53714876 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 26 0 0 0 chr4 148613491 148613517 -53714830 + AT_rich Low_complexity Low_complexity 1 26 0 10864 31 0 0 chr4 148613758 148615019 -53713328 + L1P LINE L1 3794 5054 -1092 845 200 7 0 chr4 148615264 148615419 -53712928 + AluJb SINE Alu 147 302 -10 21 36 0 0 chr4 148615424 148615452 -53712895 + AT_rich Low_complexity Low_complexity 1 28 0 1931 244 65 33 chr4 148615452 148616082 -53712265 - L1ME1 LINE L1 -44 6122 5473 268 149 0 0 chr4 148616085 148616132 -53712215 - Alu SINE Alu -2 298 252 2196 82 29 44 chr4 148616612 148616928 -53711419 + AluSx SINE Alu 2 312 0 34 24 0 0 chr4 148617584 148617625 -53710722 + AT_rich Low_complexity Low_complexity 1 41 0 685 168 0 61 chr4 148617626 148617731 -53710616 + AluJo/FLAM SINE Alu 1 98 -204 1979 135 0 4 chr4 148617731 148618012 -53710335 + AluSx SINE Alu 1 280 -32 685 168 0 61 chr4 148618012 148618037 -53710310 + AluJo/FLAM SINE Alu 98 123 -179 1263 171 14 18 chr4 148618037 148618254 -53710093 + AluJo SINE Alu 83 298 -14 746 287 30 17 chr4 148618498 148618728 -53709619 + MIR SINE MIR 16 248 -14 3382 85 17 0 chr4 148618736 148619196 -53709151 - Tigger4(Zombi) DNA MER2_type 0 2731 2264 1027 183 12 0 chr4 148619195 148619359 -53708988 - Tigger4(Zombi) DNA MER2_type -2565 166 1 * 942 37 30 8 chr4 148619530 148619664 -53708683 + (TTTC)n Simple_repeat Simple_repeat 2 138 0 2148 98 0 0 chr4 148619666 148619941 -53708406 - AluSc SINE Alu -34 275 1 530 324 78 5 chr4 148621799 148622018 -53706329 - MIR SINE MIR -23 239 5 483 253 69 17 chr4 148622659 148622833 -53705514 + L1ME4a LINE L1 5711 5893 -228 25 51 0 0 chr4 148623267 148623306 -53705041 + AT_rich Low_complexity Low_complexity 1 39 0 4676 208 40 30 chr4 148623715 148623938 -53704409 + L1MD1 LINE L1 3953 4172 -2070 2083 142 3 0 chr4 148623938 148624240 -53704107 + AluSx SINE Alu 1 303 -9 4676 208 40 30 chr4 148624240 148626282 -53702065 + L1MD1 LINE L1 4172 6242 0 202 220 0 0 chr4 148627163 148627213 -53701134 + A-rich Low_complexity Low_complexity 3 52 0 640 321 109 42 chr4 148627367 148627753 -53700594 + L2 LINE L2 2861 3272 0 371 277 36 20 chr4 148629445 148629576 -53698771 + MIR SINE MIR 18 157 -51 333 273 205 25 chr4 148629664 148629825 -53698522 - MIR SINE MIR -7 255 66 615 250 69 0 chr4 148630181 148630341 -53698006 - MIR SINE MIR -91 171 1 505 170 178 0 chr4 148631249 148631384 -53696963 - MER103 DNA DNA -1 165 7 204 302 174 12 chr4 148631483 148631569 -53696778 + MIR3 SINE MIR 82 181 -27 808 210 56 20 chr4 148632284 148632479 -53695868 - MIR SINE MIR -3 259 58 1768 168 3 3 chr4 148632494 148632780 -53695567 - AluJo SINE Alu -12 300 15 253 108 0 0 chr4 148632795 148632832 -53695515 - AluJo SINE Alu -262 37 1 203 154 0 26 chr4 148632843 148632882 -53695465 - MIR SINE MIR -219 43 6 372 288 96 14 chr4 148633329 148633610 -53694737 + L1MC5 LINE L1 7487 7790 -171 206 317 12 0 chr4 148634452 148634534 -53693813 + (TA)n Simple_repeat Simple_repeat 1 83 0 2147 115 3 0 chr4 148634534 148634820 -53693527 - AluSx SINE Alu -25 287 1 350 270 61 20 chr4 148634987 148635183 -53693164 - L1ME4a LINE L1 -205 5916 5713 240 333 147 55 chr4 148635861 148636297 -53692050 - L3 LINE CR1 -875 702 227 201 328 17 0 chr4 148636303 148636361 -53691986 - L2 LINE L2 0 3313 3255 248 175 16 0 chr4 148636678 148636741 -53691606 + CT-rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr4 148637805 148637826 -53690521 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 148639610 148639647 -53688700 + AT_rich Low_complexity Low_complexity 1 37 0 377 287 82 8 chr4 148640444 148640566 -53687781 - MIR3 SINE MIR -14 194 64 331 243 45 27 chr4 148640906 148641017 -53687330 + L1ME4a LINE L1 5547 5659 -462 315 270 20 20 chr4 148641031 148641131 -53687216 + L1ME4a LINE L1 6021 6120 -1 180 0 0 0 chr4 148641146 148641166 -53687181 + (A)n Simple_repeat Simple_repeat 1 20 0 859 212 87 5 chr4 148641856 148642040 -53686307 + MIR SINE MIR 5 203 -59 204 125 0 0 chr4 148642299 148642331 -53686016 + (CAA)n Simple_repeat Simple_repeat 1 32 0 424 193 24 12 chr4 148642866 148642949 -53685398 + MIR SINE MIR 5 88 -174 2073 125 0 14 chr4 148643245 148643540 -53684807 - AluSx SINE Alu -21 291 1 2080 84 47 10 chr4 148643783 148644079 -53684268 + AluY SINE Alu 2 308 -3 203 114 23 0 chr4 148645509 148645553 -53682794 + A-rich Low_complexity Low_complexity 2 46 0 493 246 98 0 chr4 148646473 148646595 -53681752 - MIR3 SINE MIR -1 207 74 833 248 49 4 chr4 148646799 148647025 -53681322 + MIR SINE MIR 3 238 -24 1964 109 40 20 chr4 148647114 148647416 -53680931 + AluY SINE Alu 1 308 -3 260 264 23 23 chr4 148649559 148649608 -53678739 + GA-rich Low_complexity Low_complexity 5 56 -35 1930 132 14 3 chr4 148649608 148649897 -53678450 + AluSx SINE Alu 1 292 -20 260 264 23 23 chr4 148649897 148649934 -53678413 + GA-rich Low_complexity Low_complexity 55 91 0 730 257 133 0 chr4 148650219 148650444 -53677903 - MIR SINE MIR -3 259 1 203 176 0 0 chr4 148650444 148650478 -53677869 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 2315 81 0 0 chr4 148650634 148650919 -53677428 + AluY SINE Alu 16 300 -11 204 277 0 0 chr4 148651431 148651478 -53676869 + CT-rich Low_complexity Low_complexity 3 49 0 2306 112 3 0 chr4 148653380 148653683 -53674664 + AluSx SINE Alu 1 304 -8 290 285 4 21 chr4 148653772 148653913 -53674434 - L1ME LINE L1 -281 5840 5701 1205 264 56 28 chr4 148654325 148654719 -53673628 + MLT1I LTR MaLR 3 407 -2 181 299 19 122 chr4 148654866 148654973 -53673374 - L2 LINE L2 -8 3264 3169 22 0 0 0 chr4 148655116 148655138 -53673209 + AT_rich Low_complexity Low_complexity 1 22 0 2357 90 0 10 chr4 148659539 148659839 -53668508 + AluSx SINE Alu 1 297 -15 320 313 78 0 chr4 148660061 148660176 -53668171 - MIR3 SINE MIR -83 125 2 2287 126 0 0 chr4 148660798 148661100 -53667247 - AluSx SINE Alu -9 303 2 787 238 93 23 chr4 148661900 148662202 -53666145 - MER58B DNA MER1_type 0 341 19 2243 113 3 0 chr4 148662354 148662665 -53665682 + AluSx SINE Alu 1 312 0 207 313 89 80 chr4 148662740 148663069 -53665278 + L2 LINE L2 996 3225 -47 779 302 36 8 chr4 148663162 148663410 -53664937 + L3 LINE CR1 1320 1574 -3 227 274 42 53 chr4 148663982 148664077 -53664270 - L2 LINE L2 -5 3267 3174 202 261 14 14 chr4 148664215 148664284 -53664063 + A-rich Low_complexity Low_complexity 5 73 0 999 104 0 0 chr4 148664611 148664746 -53663601 - AluSp/q SINE Alu 0 313 179 2094 100 3 17 chr4 148664791 148665090 -53663257 + AluSx SINE Alu 1 295 -17 326 315 110 10 chr4 148665141 148665341 -53663006 - MIR SINE MIR 0 262 43 1145 178 42 5 chr4 148665343 148665534 -53662813 + AluJo SINE Alu 85 282 -30 821 98 49 8 chr4 148666536 148666658 -53661689 - FLAM_C SINE Alu -6 127 1 221 164 49 0 chr4 148666787 148666848 -53661499 + (TA)n Simple_repeat Simple_repeat 2 65 0 317 270 113 25 chr4 148666879 148667038 -53661309 - L1ME4a LINE L1 -225 5896 5724 21 36 0 0 chr4 148667811 148667839 -53660508 + AT_rich Low_complexity Low_complexity 1 28 0 2475 80 0 0 chr4 148668350 148668652 -53659695 + AluSx SINE Alu 1 302 -10 665 225 47 30 chr4 148670597 148670766 -53657581 + MER5A DNA MER1_type 18 189 0 667 286 65 5 chr4 148671248 148671449 -53656898 - MIR SINE MIR -12 250 34 197 232 18 18 chr4 148674146 148674202 -53654145 + L2 LINE L2 3258 3313 0 228 35 0 0 chr4 148675467 148675496 -53652851 + (TG)n Simple_repeat Simple_repeat 1 29 0 2144 119 10 13 chr4 148675993 148676296 -53652051 - AluSq SINE Alu -10 303 2 711 172 45 64 chr4 148676336 148676493 -53651854 - MLT1G LTR MaLR -423 167 14 572 284 39 10 chr4 148676853 148677061 -53651286 + MIR SINE MIR 49 262 0 202 257 0 29 chr4 148677067 148677137 -53651210 + MIR SINE MIR 193 260 -2 349 170 0 0 chr4 148677533 148677586 -53650761 + AluS SINE Alu 227 279 -22 1082 125 6 0 chr4 148677591 148677767 -53650580 + (GGAGAA)n Simple_repeat Simple_repeat 3 179 0 745 160 24 6 chr4 148677769 148677938 -53650409 + GA-rich Low_complexity Low_complexity 6 177 0 189 48 0 71 chr4 148677956 148677998 -53650349 + (GAA)n Simple_repeat Simple_repeat 2 40 0 2146 113 0 0 chr4 148678100 148678413 -53649934 + AluSx SINE Alu 1 313 0 347 287 52 17 chr4 148678427 148678542 -53649805 + L2 LINE L2 3150 3268 -4 203 161 0 0 chr4 148679489 148679520 -53648827 + polypyrimidine Low_complexity Low_complexity 1 31 0 297 0 0 0 chr4 148680022 148680055 -53648292 + (GA)n Simple_repeat Simple_repeat 2 34 0 430 154 73 109 chr4 148680433 148680543 -53647804 - MER2 DNA MER2_type 0 345 240 2231 97 0 0 chr4 148680759 148681077 -53647270 + AluSc SINE Alu 1 318 0 29 0 0 0 chr4 148682298 148682327 -53646020 + AT_rich Low_complexity Low_complexity 1 29 0 2170 111 0 3 chr4 148682327 148682616 -53645731 - AluSx SINE Alu -24 288 1 461 221 18 0 chr4 148683515 148683628 -53644719 + MER5C DNA MER1_type 208 322 -2 22 0 0 0 chr4 148685766 148685788 -53642559 + AT_rich Low_complexity Low_complexity 1 22 0 186 247 12 62 chr4 148686088 148686169 -53642178 - MIR SINE MIR -74 188 112 378 61 0 0 chr4 148686942 148686991 -53641356 + (CA)n Simple_repeat Simple_repeat 2 50 0 351 0 0 0 chr4 148686990 148687029 -53641318 + (GA)n Simple_repeat Simple_repeat 2 40 0 * 2218 111 7 0 chr4 148689900 148690198 -53638149 + AluSx SINE Alu 1 300 -12 1214 185 56 5 chr4 148691012 148691228 -53637119 + AluJo SINE Alu 44 270 -42 307 160 27 13 chr4 148691232 148691307 -53637040 + GA-rich Low_complexity Low_complexity 1 76 0 414 276 41 21 chr4 148692439 148692584 -53635763 + MIR3 SINE MIR 58 205 -3 1134 183 20 60 chr4 148692603 148692855 -53635492 + L1ME1 LINE L1 5825 6066 -100 558 121 0 0 chr4 148692858 148692941 -53635406 - AluJ/FLAM SINE Alu -225 87 5 281 265 67 0 chr4 148692948 148693054 -53635293 + L1ME1 LINE L1 6062 6177 -17 573 261 87 60 chr4 148693443 148693661 -53634686 - MIR SINE MIR -3 259 36 1960 161 3 0 chr4 148693791 148694101 -53634246 + AluSx SINE Alu 1 311 -1 250 23 47 23 chr4 148694537 148694580 -53633767 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 462 114 0 0 chr4 148695085 148695155 -53633192 + (TA)n Simple_repeat Simple_repeat 1 70 0 2435 66 0 38 chr4 148696431 148696750 -53631597 - AluY SINE Alu -4 307 1 223 252 50 92 chr4 148698932 148699051 -53629296 + L2 LINE L2 3141 3254 -18 389 295 102 0 chr4 148701273 148701439 -53626908 + MIR SINE MIR 53 235 -27 260 281 0 0 chr4 148701448 148701512 -53626835 - L2 LINE L2 -2 3311 3248 300 91 0 0 chr4 148702252 148702296 -53626051 + (CA)n Simple_repeat Simple_repeat 1 44 0 813 156 0 0 chr4 148702409 148702537 -53625810 - FRAM SINE Alu 0 40 1 229 287 104 35 chr4 148702574 148702689 -53625658 + MIR SINE MIR 21 143 -119 1570 234 77 79 chr4 148703722 148704278 -53624069 + MLT1H1 LTR MaLR 1 555 0 2405 91 0 3 chr4 148707915 148708224 -53620123 - AluSg SINE Alu -2 308 1 516 311 53 10 chr4 148708698 148708904 -53619443 - MIR SINE MIR -23 239 25 358 303 24 18 chr4 148710074 148710239 -53618108 + MIR SINE MIR 81 246 -16 898 119 8 8 chr4 148710339 148710473 -53617874 - AluJb SINE Alu -167 145 12 2020 160 41 25 chr4 148711894 148712279 -53616068 + MLT1B LTR MaLR 3 567 0 2846 7 0 0 chr4 148713458 148713759 -53614588 - AluYa5 SINE Alu -10 301 1 1747 133 11 11 chr4 148713785 148714049 -53614298 + AluSq SINE Alu 38 301 -12 2408 92 15 9 chr4 148714145 148714481 -53613866 - THE1C LTR MaLR -37 338 1 2827 10 0 0 chr4 148716013 148716314 -53612033 - AluY SINE Alu -10 301 1 831 163 0 14 chr4 148716501 148716642 -53611705 + FRAM SINE Alu 18 156 -20 252 86 0 0 chr4 148716642 148716677 -53611670 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 249 229 14 29 chr4 148717479 148717549 -53610798 - MIR SINE MIR -85 123 55 2582 47 0 0 chr4 148720421 148720720 -53607627 - AluY SINE Alu -12 299 1 1956 136 0 4 chr4 148722422 148722702 -53605645 + AluJo SINE Alu 1 279 -33 380 111 0 0 chr4 148722706 148722760 -53605587 - Alu SINE Alu -1 300 247 676 199 8 0 chr4 148722843 148722974 -53605373 + FLAM_C SINE Alu 2 133 0 1836 87 0 9 chr4 148723474 148723704 -53604643 + AluSg SINE Alu 1 228 -82 386 299 197 35 chr4 148724237 148724987 -53603360 - L2 LINE L2 -430 2884 2013 21 0 0 0 chr4 148725259 148725280 -53603067 + AT_rich Low_complexity Low_complexity 1 21 0 2322 85 4 0 chr4 148725376 148725657 -53602690 + AluSg SINE Alu 1 307 0 193 40 0 0 chr4 148725657 148725682 -53602665 + (CAA)n Simple_repeat Simple_repeat 2 180 0 852 135 0 15 chr4 148725694 148725827 -53602520 + FLAM_C SINE Alu 1 131 -12 22 70 0 0 chr4 148725988 148726031 -53602316 + AT_rich Low_complexity Low_complexity 1 43 0 804 162 8 0 chr4 148726048 148726165 -53602182 - FLAM_A SINE Alu -15 118 1 213 39 0 0 chr4 148728985 148729011 -53599336 + (A)n Simple_repeat Simple_repeat 1 26 0 2323 101 0 0 chr4 148729745 148730043 -53598304 - AluSq SINE Alu -15 298 1 2296 98 0 0 chr4 148730380 148730677 -53597670 - AluSx SINE Alu -15 297 1 198 305 165 55 chr4 148731059 148731295 -53597052 + L2 LINE L2 2927 3188 -84 247 250 239 22 chr4 148731391 148731483 -53596864 + MIR SINE MIR 143 254 -8 220 200 0 60 chr4 148732010 148732060 -53596287 + polypurine Low_complexity Low_complexity 2 48 0 605 228 51 0 chr4 148734776 148734934 -53593413 - L1MC4 LINE L1 -443 7599 7434 * 1380 148 86 23 chr4 148734932 148735235 -53593112 - L1MC4 LINE L1 -898 7144 6823 447 201 39 172 chr4 148735803 148735873 -53592474 - MER69 DNA AcHobo 0 2526 2448 2135 106 7 3 chr4 148735873 148736176 -53592171 + AluY SINE Alu 3 306 -5 447 201 39 172 chr4 148736176 148736309 -53592038 - MER69 DNA AcHobo -78 2448 1 213 357 52 33 chr4 148736777 148737049 -53591298 + L2 LINE L2 2824 3100 -172 239 253 69 11 chr4 148737170 148737257 -53591090 + L2 LINE L2 3179 3270 -2 787 208 120 35 chr4 148737518 148737802 -53590545 - L1MC5 LINE L1 -50 7911 7604 559 103 0 0 chr4 148740416 148740484 -53587863 + AluJ/FRAM SINE Alu 221 288 -24 226 232 0 0 chr4 148740487 148740543 -53587804 + L1MC4 LINE L1 6648 6703 -1339 879 251 72 13 chr4 148741076 148741311 -53587036 + MIR SINE MIR 12 260 -2 856 141 47 0 chr4 148741435 148741563 -53586784 + AluJo SINE Alu 1 134 -178 28 0 0 0 chr4 148742057 148742085 -53586262 + AT_rich Low_complexity Low_complexity 1 28 0 246 234 0 0 chr4 148742803 148742850 -53585497 + MIR SINE MIR 1 47 -215 721 293 28 19 chr4 148743661 148744028 -53584319 + L1MC4a LINE L1 5640 5997 -124 316 208 94 42 chr4 148744104 148744200 -53584147 - L2 LINE L2 -4 3309 3209 * 1008 319 68 37 chr4 148744195 148744678 -53583669 - L3 LINE CR1 -77 1500 1003 396 267 78 0 chr4 148744909 148744999 -53583348 + L2 LINE L2 3160 3256 -16 2450 66 0 0 chr4 148745206 148745493 -53582854 + AluSg SINE Alu 1 287 -23 671 196 87 87 chr4 148745765 148745984 -53582363 - MER20 DNA MER1_type 0 219 1 1766 126 60 23 chr4 148745990 148746291 -53582056 + AluJo SINE Alu 1 312 0 2137 93 7 0 chr4 148747277 148747588 -53580759 - AluSg SINE Alu 0 313 1 2307 113 3 0 chr4 148747588 148747898 -53580449 - AluSq SINE Alu -2 311 1 2334 92 7 3 chr4 148748579 148748883 -53579464 + AluSc SINE Alu 1 305 -4 225 171 0 0 chr4 148749619 148749674 -53578673 + (TGAG)n Simple_repeat Simple_repeat 1 55 0 192 77 0 0 chr4 148751657 148751683 -53576664 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr4 148752736 148752757 -53575590 + GC_rich Low_complexity Low_complexity 1 21 0 323 96 19 0 chr4 148752915 148752967 -53575380 + (GGA)n Simple_repeat Simple_repeat 1 53 0 23 33 0 0 chr4 148753399 148753429 -53574918 + GC_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 148754865 148754893 -53573454 + GC_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr4 148755833 148755855 -53572492 + (CCG)n Simple_repeat Simple_repeat 2 23 0 * 288 91 0 0 chr4 148755853 148755897 -53572450 + (TCC)n Simple_repeat Simple_repeat 1 44 0 259 283 115 0 chr4 148756196 148756309 -53572038 + L2 LINE L2 2135 2260 -1054 1426 274 62 31 chr4 148756319 148756665 -53571682 + L2 LINE L2 2364 2735 -579 2285 103 3 3 chr4 148756665 148756975 -53571372 - AluSg SINE Alu 0 310 1 1426 274 62 31 chr4 148756975 148757180 -53571167 + L2 LINE L2 2735 2932 -382 945 334 45 15 chr4 148757226 148757624 -53570723 + LTR16A LTR ERVL 16 425 -25 292 238 10 99 chr4 148757642 148757743 -53570604 + L2 LINE L2 3004 3095 -218 253 165 66 11 chr4 148757769 148757860 -53570487 + (TATAA)n Simple_repeat Simple_repeat 5 100 0 341 254 167 0 chr4 148757862 148758000 -53570347 + L2 LINE L2 3148 3308 -5 976 174 29 0 chr4 148758092 148758264 -53570083 - FRAM SINE Alu -1 175 1 993 284 106 44 chr4 148758345 148759795 -53568552 + L1ME3A LINE L1 4137 5741 -421 1477 125 46 8 chr4 148759804 148759856 -53568491 + Tigger1 DNA MER2_type 1 50 -2368 360 0 0 0 chr4 148759856 148759896 -53568451 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 1477 125 46 8 chr4 148759896 148760083 -53568264 + Tigger1 DNA MER2_type 50 249 -2169 * 4728 121 17 10 chr4 148760077 148760422 -53567925 + Tigger1 DNA MER2_type 1694 2035 -383 1681 126 75 0 chr4 148760422 148760677 -53567670 + AluSx SINE Alu 32 305 -7 4728 121 17 10 chr4 148760677 148761051 -53567296 + Tigger1 DNA MER2_type 2035 2418 0 388 292 38 14 chr4 148761052 148761233 -53567114 + L1ME3A LINE L1 5757 5948 -214 237 303 20 0 chr4 148761413 148761512 -53566835 + L1MC4 LINE L1 7933 8033 -9 30 27 0 0 chr4 148761512 148761549 -53566798 + AT_rich Low_complexity Low_complexity 1 37 0 7867 126 19 26 chr4 148761980 148762704 -53565643 + Tigger3b DNA MER2_type 1 715 -2313 1507 120 0 0 chr4 148762704 148762904 -53565443 + AluSg/x SINE Alu 98 297 -13 7867 126 19 26 chr4 148762904 148763418 -53564929 + Tigger3b DNA MER2_type 715 1231 0 654 209 187 88 chr4 148763499 148763982 -53564365 + L1ME4a LINE L1 5563 6118 -3 2008 126 0 14 chr4 148763996 148764305 -53564042 - AluSx SINE Alu 0 305 1 26 30 0 0 chr4 148765444 148765477 -53562870 + AT_rich Low_complexity Low_complexity 1 33 0 296 299 177 20 chr4 148767421 148767568 -53560779 + MIR SINE MIR 61 230 -32 1101 203 154 52 chr4 148767603 148767987 -53560360 - LTR16C LTR ERVL 0 491 69 799 246 99 14 chr4 148768588 148768799 -53559548 + MIR SINE MIR 13 241 -21 1004 201 36 69 chr4 148768930 148769204 -53559143 + L1MA10 LINE L1 6069 6333 -1 1979 148 10 3 chr4 148769730 148770033 -53558314 + AluJo SINE Alu 6 310 -2 410 259 146 27 chr4 148770170 148770355 -53557992 + MIR3 SINE MIR 2 208 0 1037 227 91 3 chr4 148770687 148770995 -53557352 - L2 LINE L2 -1350 1964 1630 3124 277 61 17 chr4 148771006 148771049 -53557298 - L2 LINE L2 -2178 1136 1096 243 0 0 0 chr4 148771049 148771076 -53557271 + (GA)n Simple_repeat Simple_repeat 2 28 0 3124 277 61 17 chr4 148771076 148771820 -53556527 - L2 LINE L2 -2218 1096 287 1081 209 66 19 chr4 148771820 148772031 -53556316 + MER58A DNA MER1_type 1 221 -3 3124 277 61 17 chr4 148772031 148772309 -53556038 - L2 LINE L2 -3027 287 23 221 320 48 39 chr4 148773264 148773367 -53554980 - L2 LINE L2 -2 3270 3167 * 657 338 78 15 chr4 148773362 148773696 -53554651 + L3 LINE CR1 180 534 -1043 222 277 151 34 chr4 148773894 148774013 -53554334 + L3 LINE CR1 564 696 -881 1312 160 24 0 chr4 148774112 148774324 -53554023 + AluSx SINE Alu 1 217 -95 212 285 66 140 chr4 148774557 148774785 -53553562 + L2 LINE L2 3022 3232 -40 2407 92 0 0 chr4 148776523 148776828 -53551519 - AluSx SINE Alu -7 305 1 23 0 0 0 chr4 148777851 148777874 -53550473 + AT_rich Low_complexity Low_complexity 1 23 0 273 243 29 48 chr4 148778354 148778457 -53549890 - L2 LINE L2 -1 3271 3171 335 286 134 0 chr4 148778846 148778965 -53549382 - MER103 DNA DNA -12 154 20 21 36 0 0 chr4 148779856 148779884 -53548463 + AT_rich Low_complexity Low_complexity 1 28 0 478 246 0 9 chr4 148779967 148780081 -53548266 - MIR SINE MIR -102 160 48 2153 109 0 0 chr4 148780168 148780478 -53547869 + AluSx SINE Alu 1 310 0 244 300 0 0 chr4 148781121 148781191 -53547156 - MIR SINE MIR -33 229 160 29 0 0 0 chr4 148781286 148781315 -53547032 + AT_rich Low_complexity Low_complexity 1 29 0 330 26 0 0 chr4 148781334 148781373 -53546974 + (TG)n Simple_repeat Simple_repeat 2 40 0 4075 38 19 0 chr4 148781381 148781850 -53546497 - L1PA8 LINE L1 -4 6168 5691 1496 172 37 4 chr4 148781907 148782212 -53546135 + AluJb SINE Alu 1 314 0 1663 176 36 59 chr4 148782313 148782670 -53545677 + MLT1A2 LTR MaLR 1 349 -25 960 141 34 0 chr4 148782676 148782825 -53545522 - FRAM SINE Alu -26 150 1 276 241 0 0 chr4 148782921 148782979 -53545368 - MIR SINE MIR -110 152 95 288 221 118 31 chr4 148783092 148783219 -53545128 - L2 LINE L2 -3 3310 3173 928 189 0 22 chr4 148784592 148784772 -53543575 + FRAM SINE Alu 1 176 0 2030 119 6 31 chr4 148784783 148785101 -53543246 + AluY SINE Alu 2 311 0 964 294 89 37 chr4 148785509 148785968 -53542379 + MLT1K LTR MaLR 45 527 -61 2131 123 3 13 chr4 148785996 148786305 -53542042 - AluSg SINE Alu -4 306 1 324 0 0 0 chr4 148786322 148786358 -53541989 + (TG)n Simple_repeat Simple_repeat 1 36 0 245 292 71 31 chr4 148786596 148786822 -53541525 + L1MC/D LINE L1 5653 5887 -1921 2431 147 28 8 chr4 148786822 148787529 -53540818 + L1MA8 LINE L1 5528 6291 0 2548 44 3 0 chr4 148787536 148787830 -53540517 - AluY SINE Alu -15 296 2 2204 123 0 3 chr4 148788045 148788355 -53539992 - AluSg1 SINE Alu 0 309 1 216 158 0 0 chr4 148788370 148788408 -53539939 + GA-rich Low_complexity Low_complexity 4 41 0 1784 289 39 5 chr4 148788773 148788900 -53539447 + L2 LINE L2 2262 2383 -931 1716 227 77 30 chr4 148788900 148789397 -53538950 + MLT2B1 LTR ERVL 1 520 0 1784 289 39 5 chr4 148789397 148789854 -53538493 + L2 LINE L2 2383 2866 -448 2413 86 0 16 chr4 148789886 148790201 -53538146 - AluSp SINE Alu -3 310 1 500 306 131 0 chr4 148790576 148790798 -53537549 - MIR SINE MIR 0 262 12 233 313 12 50 chr4 148791159 148791239 -53537108 - L2 LINE L2 0 3313 3237 568 284 26 46 chr4 148791274 148791468 -53536879 + MIR SINE MIR 5 194 -68 274 326 90 42 chr4 148792034 148792178 -53536169 + MIR3 SINE MIR 24 174 -34 1120 180 14 18 chr4 148793410 148793627 -53534720 + AluJo SINE Alu 82 297 -15 3270 236 27 33 chr4 148793664 148793982 -53534365 - L1M4 LINE L1 -743 5403 5085 700 202 31 0 chr4 148793982 148794111 -53534236 + FLAM_C SINE Alu 1 133 0 3270 236 27 33 chr4 148794111 148794131 -53534216 - L1M4 LINE L1 -1061 5085 5066 2314 74 17 10 chr4 148794131 148794427 -53533920 + AluSc SINE Alu 1 298 -11 3270 236 27 33 chr4 148794427 148795077 -53533270 - L1M4 LINE L1 -1080 5066 4420 995 253 104 45 chr4 148795099 148795561 -53532786 - LTR33A LTR ERVL -32 491 3 331 312 48 24 chr4 148795770 148796020 -53532327 + L1M4 LINE L1 3602 3857 -2289 276 280 11 44 chr4 148846140 148846322 -53482025 + (CATA)n Simple_repeat Simple_repeat 1 176 0 * 281 263 26 32 chr4 148846186 148846342 -53482005 + (CATATA)n Simple_repeat Simple_repeat 3 157 0 * 290 271 20 40 chr4 148846244 148846395 -53481952 + (CA)n Simple_repeat Simple_repeat 1 148 0 190 219 26 26 chr4 148846412 148846563 -53481784 + (CA)n Simple_repeat Simple_repeat 2 152 0 366 248 33 35 chr4 148846578 148846967 -53481380 + (CA)n Simple_repeat Simple_repeat 1 388 0 3299 96 4 4 chr4 148847333 148847801 -53480546 + HERVH LTR ERV1 3509 3976 -3737 1337 184 10 61 chr4 148847901 148847966 -53480381 + MLT1A1 LTR MaLR 88 155 -210 2196 91 0 0 chr4 148847966 148848241 -53480106 + AluY SINE Alu 20 294 -17 1337 184 10 61 chr4 148848241 148848468 -53479879 + MLT1A1 LTR MaLR 155 365 0 24 0 0 0 chr4 148849450 148849474 -53478873 + AT_rich Low_complexity Low_complexity 1 24 0 323 143 0 0 chr4 148849630 148849679 -53478668 - tRNA-Cys-TGC tRNA tRNA -26 49 1 390 205 12 24 chr4 148849706 148849789 -53478558 + MER81 DNA DNA 1 82 -32 1840 117 33 7 chr4 148849789 148850092 -53478255 + AluSx SINE Alu 1 310 0 1761 131 0 19 chr4 148850107 148850244 -53478103 + AluSx SINE Alu 1 132 -180 2251 82 3 0 chr4 148850244 148850555 -53477792 + AluY SINE Alu 1 311 0 1761 131 0 19 chr4 148850555 148850677 -53477670 + AluSx SINE Alu 132 255 -57 469 88 12 62 chr4 148850777 148850857 -53477490 + HERVH LTR ERV1 7638 7713 0 2934 75 120 0 chr4 148850857 148851257 -53477090 + LTR7 LTR ERV1 1 448 -2 1925 158 0 0 chr4 148851515 148851813 -53476534 + AluJo SINE Alu 1 298 -14 1351 161 29 11 chr4 148851952 148852226 -53476121 + L1 LINE L1 4147 4425 -1721 267 136 23 0 chr4 148852834 148852878 -53475469 - L2 LINE L2 -5 3308 3264 2740 23 0 0 chr4 148852878 148853181 -53475166 - AluYa5 SINE Alu -8 303 1 247 271 94 63 chr4 148853243 148853410 -53474937 + MIR SINE MIR 24 191 -71 28 48 0 0 chr4 148853511 148853553 -53474794 + AT_rich Low_complexity Low_complexity 1 42 0 316 268 110 24 chr4 148853698 148853862 -53474485 - L1ME1 LINE L1 -221 5945 5768 205 161 43 11 chr4 148854012 148854105 -53474242 + (TA)n Simple_repeat Simple_repeat 1 96 0 4026 88 40 148 chr4 148854127 148854681 -53473666 - Tigger3(Golem) DNA MER2_type -40 2989 2377 1247 181 30 86 chr4 148854681 148854985 -53473362 + AluJo SINE Alu 1 287 -25 4026 88 40 148 chr4 148854985 148855083 -53473264 - Tigger3(Golem) DNA MER2_type -652 2377 2270 836 224 0 0 chr4 148855083 148855244 -53473103 + AluJb SINE Alu 137 297 -15 4026 88 40 148 chr4 148855244 148855768 -53472579 - Tigger3(Golem) DNA MER2_type -759 2270 3 255 61 0 0 chr4 148855768 148855801 -53472546 + (TG)n Simple_repeat Simple_repeat 2 34 0 218 313 21 62 chr4 148855963 148856107 -53472240 + L2 LINE L2 2848 2985 -328 1225 124 0 0 chr4 148856107 148856276 -53472071 - AluSg/x SINE Alu -18 292 124 206 309 82 10 chr4 148856376 148856473 -53471874 - L2 LINE L2 -48 3224 3121 536 159 122 9 chr4 148859252 148859359 -53468988 - L2 LINE L2 -5 3308 3190 226 299 45 0 chr4 148859476 148859543 -53468804 + MER5A DNA MER1_type 113 182 -7 1610 168 30 24 chr4 148859554 148859851 -53468496 + AluJo SINE Alu 1 299 -13 325 235 47 40 chr4 148859982 148860131 -53468216 + (TG)n Simple_repeat Simple_repeat 1 150 0 357 270 35 29 chr4 148860156 148860330 -53468017 + (TG)n Simple_repeat Simple_repeat 1 175 0 456 250 33 34 chr4 148860382 148860782 -53467565 + (TG)n Simple_repeat Simple_repeat 1 399 0 340 266 34 34 chr4 148860821 148860998 -53467349 + (TATG)n Simple_repeat Simple_repeat 1 177 0 * 422 229 39 34 chr4 148860956 148861135 -53467212 + (TG)n Simple_repeat Simple_repeat 1 180 0 284 226 117 80 chr4 148861783 148861872 -53466475 - MIR SINE MIR -2 260 163 2114 133 3 0 chr4 148861872 148862173 -53466174 - AluSx SINE Alu -10 302 1 284 226 117 80 chr4 148862173 148862220 -53466127 - MIR SINE MIR -99 163 119 372 271 266 16 chr4 148862881 148863073 -53465274 + MIR SINE MIR 22 261 -1 198 0 0 0 chr4 148863283 148863305 -53465042 + (T)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr4 148863824 148863846 -53464501 + AT_rich Low_complexity Low_complexity 1 22 0 363 163 93 0 chr4 148865088 148865174 -53463173 - MER53 DNA DNA 0 189 96 298 268 50 10 chr4 148865288 148865407 -53462940 - MIR3 SINE MIR -23 185 60 260 296 43 68 chr4 148867484 148867646 -53460701 - L2 LINE L2 0 3272 3115 810 161 0 8 chr4 148867649 148867773 -53460574 + FLAM_C SINE Alu 2 124 -19 786 238 79 23 chr4 148867873 148868334 -53460013 + MER20B DNA MER1_type 259 772 -11 2129 166 95 0 chr4 148868516 148868884 -53459463 - MER57A LTR ERV1 0 403 1 1274 173 115 37 chr4 148869397 148869720 -53458627 - MLT1A1 LTR MaLR -6 359 12 216 315 0 0 chr4 148869923 148869977 -53458370 + polypurine Low_complexity Low_complexity 3 56 0 252 173 19 0 chr4 148870039 148870091 -53458256 + MLT1G1 LTR MaLR 10 62 -533 458 233 111 52 chr4 148870756 148871026 -53457321 + LTR33A LTR ERVL 238 523 0 2190 251 46 31 chr4 148872287 148872834 -53455513 + MLT1H1 LTR MaLR 1 555 0 1870 159 3 3 chr4 148872877 148873172 -53455175 - AluJo SINE Alu -15 297 3 309 203 34 0 chr4 148873379 148873438 -53454909 + MER5A DNA MER1_type 2 62 -127 1044 175 0 0 chr4 148873467 148873621 -53454726 - AluJo SINE Alu -12 290 137 266 109 36 73 chr4 148873621 148873676 -53454671 - AluJo SINE Alu -166 136 84 * 1565 188 35 25 chr4 148873667 148873981 -53454366 - MER74A LTR ERVL -241 317 1 267 294 161 21 chr4 148873981 148874124 -53454223 - MIR SINE MIR -99 163 1 271 235 0 94 chr4 148874869 148874954 -53453393 - L2 LINE L2 -25 3288 3212 382 254 79 16 chr4 148875139 148875265 -53453082 + L2 LINE L2 3180 3313 0 21 0 0 0 chr4 148875312 148875333 -53453014 + AT_rich Low_complexity Low_complexity 1 21 0 453 303 80 6 chr4 148877509 148877684 -53450663 + MIR SINE MIR 6 193 -69 2531 143 26 14 chr4 148877691 148878111 -53450236 + MSTB1 LTR MaLR 8 432 0 204 246 0 16 chr4 148878158 148878219 -53450128 + CT-rich Low_complexity Low_complexity 1 60 0 450 53 0 0 chr4 148878437 148878494 -53449853 + (TG)n Simple_repeat Simple_repeat 1 57 0 206 171 0 0 chr4 148878514 148878549 -53449798 + MIR SINE MIR 156 190 -72 214 77 0 0 chr4 148878967 148878993 -53449354 + (CA)n Simple_repeat Simple_repeat 2 27 0 2760 82 11 14 chr4 148879544 148879909 -53448438 - L1PA8A LINE L1 0 6131 5768 992 277 112 15 chr4 148879970 148880509 -53447838 + LTR50 LTR ERVL 3 676 -119 2587 169 107 4 chr4 148880511 148880977 -53447370 - MLT2B2 LTR ERVL 0 515 2 337 218 127 9 chr4 148880979 148881089 -53447258 + LTR50 LTR ERVL 672 794 -1 509 336 7 7 chr4 148881207 148881353 -53446994 + MLT1K LTR MaLR 79 224 -364 333 245 66 0 chr4 148881956 148882062 -53446285 - MIR SINE MIR -75 187 75 1987 104 0 71 chr4 148883307 148883615 -53444732 + AluSc SINE Alu 1 286 -23 28 0 0 0 chr4 148885191 148885219 -53443128 + AT_rich Low_complexity Low_complexity 1 28 0 1009 168 84 11 chr4 148885943 148886134 -53442213 + MER3 DNA MER1_type 5 209 0 977 192 50 23 chr4 148886191 148886410 -53441937 + AluJo SINE Alu 85 309 -3 258 345 59 8 chr4 148889925 148890044 -53438303 + MIR3 SINE MIR 33 157 -51 204 304 188 0 chr4 148890474 148890586 -53437761 - MIR SINE MIR -108 154 22 2112 110 0 20 chr4 148890923 148891215 -53437132 - AluSg SINE Alu -24 286 1 378 276 143 3 chr4 148891470 148891651 -53436696 + MIR SINE MIR 51 249 -13 266 307 111 18 chr4 148891765 148891918 -53436429 - MIR SINE MIR -60 148 20 578 103 8 26 chr4 148892778 148892895 -53435452 + (CA)n Simple_repeat Simple_repeat 2 116 0 196 175 32 16 chr4 148892953 148893016 -53435331 + GA-rich Low_complexity Low_complexity 3 66 0 183 111 44 89 chr4 148893234 148893279 -53435068 + MIR SINE MIR 87 129 -133 408 301 85 23 chr4 148894519 148894695 -53433652 - MIR3 SINE MIR -9 199 13 211 217 261 51 chr4 148895148 148895286 -53433061 - MIR3 SINE MIR -33 175 9 746 231 65 16 chr4 148895433 148895619 -53432728 - MER3 DNA MER1_type -1 208 14 311 351 84 10 chr4 148895643 148895845 -53432502 - MIR SINE MIR 0 262 46 744 307 76 0 chr4 148895912 148896150 -53432197 - MIR SINE MIR -5 257 2 2043 68 57 4 chr4 148896907 148897172 -53431175 - AluSc SINE Alu -4 305 27 286 329 13 0 chr4 148897911 148897990 -53430357 + L3 LINE CR1 1403 1482 -95 187 373 0 0 chr4 148898308 148898367 -53429980 + L2 LINE L2 3008 3066 -247 212 240 135 104 chr4 148898479 148898575 -53429772 + L2 LINE L2 3215 3313 0 207 0 0 0 chr4 148898829 148898852 -53429495 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1941 124 53 0 chr4 148899941 148900224 -53428123 - AluSx SINE Alu -14 298 1 2319 213 36 11 chr4 148901004 148901474 -53426873 - MLT1F LTR MaLR -60 482 1 347 251 221 12 chr4 148902034 148902197 -53426150 - MIR SINE MIR -27 235 39 359 324 40 28 chr4 148902536 148902712 -53425635 - MIR SINE MIR -77 185 8 321 276 136 68 chr4 148902930 148903180 -53425167 - L1M2 LINE L1 -5827 1022 756 207 182 0 23 chr4 148903343 148903387 -53424960 + G-rich Low_complexity Low_complexity 3 45 0 553 273 105 0 chr4 148904046 148904189 -53424158 - MIR3 SINE MIR -25 183 26 833 148 16 0 chr4 148905464 148905592 -53422755 - AluJb SINE Alu -12 300 171 733 171 8 16 chr4 148906333 148906456 -53421891 + FLAM_C SINE Alu 1 122 -21 560 247 110 0 chr4 148907705 148907851 -53420496 + MIR SINE MIR 80 241 -21 250 351 36 40 chr4 148909312 148909560 -53418787 + L2 LINE L2 2459 2705 -609 1218 155 213 8 chr4 148909572 148909811 -53418536 + AluJo SINE Alu 1 288 -14 181 280 30 30 chr4 148910013 148910113 -53418234 + L2 LINE L2 2935 3034 -238 23 0 0 0 chr4 148910151 148910174 -53418173 + AT_rich Low_complexity Low_complexity 1 23 0 334 240 20 135 chr4 148910717 148910917 -53417430 - MER5A DNA MER1_type -5 184 8 21 0 0 0 chr4 148910936 148910957 -53417390 + AT_rich Low_complexity Low_complexity 1 21 0 288 310 78 26 chr4 148911103 148911219 -53417128 - L2 LINE L2 -9 3263 3142 367 270 52 26 chr4 148911644 148911759 -53416588 - L2 LINE L2 -7 3265 3148 2158 131 126 8 chr4 148912727 148912911 -53415436 - MSTA LTR MaLR -1 427 266 189 0 0 0 chr4 148912911 148912932 -53415415 + (GA)n Simple_repeat Simple_repeat 1 21 0 2158 131 126 8 chr4 148912932 148913129 -53415218 - MSTA LTR MaLR -162 266 1 185 65 32 0 chr4 148913692 148913723 -53414624 + (AGGTG)n Simple_repeat Simple_repeat 3 34 0 1442 186 10 27 chr4 148914101 148914397 -53413950 - AluJb SINE Alu -19 293 3 458 225 86 46 chr4 148914404 148914555 -53413792 + MIR SINE MIR 12 168 -94 1020 235 116 47 chr4 148914653 148915194 -53413153 + MER20B DNA MER1_type 30 647 -136 21 0 0 0 chr4 148915510 148915531 -53412816 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr4 148915651 148915690 -53412657 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr4 148916484 148916506 -53411841 + AT_rich Low_complexity Low_complexity 1 22 0 1548 153 153 4 chr4 148916755 148917017 -53411330 - AluJb SINE Alu -1 301 1 1912 174 30 3 chr4 148917019 148917352 -53410995 + MLT1A1 LTR MaLR 24 365 0 256 186 0 0 chr4 148917500 148917543 -53410804 + Alu SINE Alu 2 44 -259 1095 129 347 4 chr4 148917543 148917768 -53410579 + AluJb SINE Alu 1 302 0 24 0 0 0 chr4 148917813 148917837 -53410510 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr4 148918479 148918511 -53409836 + AT_rich Low_complexity Low_complexity 1 32 0 347 120 20 0 chr4 148918961 148919011 -53409336 - Tigger6 DNA MER2_type -1546 51 1 1087 190 101 1 chr4 148919066 148919337 -53409010 - Tigger6b DNA MER2_type -595 1002 180 338 293 36 36 chr4 148919446 148919586 -53408761 - L1ME LINE L1 -582 5584 5445 27 49 0 0 chr4 148920102 148920143 -53408204 + AT_rich Low_complexity Low_complexity 1 41 0 22 88 0 0 chr4 148920333 148920390 -53407957 + AT_rich Low_complexity Low_complexity 1 57 0 5843 250 84 23 chr4 148921158 148921426 -53406921 + L1MDa LINE L1 2444 2694 -3846 1710 172 21 3 chr4 148921426 148921717 -53406630 - AluJb SINE Alu -16 296 1 5843 250 84 23 chr4 148921717 148923532 -53404815 + L1MDa LINE L1 2694 4661 -1879 258 32 0 0 chr4 148923532 148923563 -53404784 + (CA)n Simple_repeat Simple_repeat 2 32 0 5843 250 84 23 chr4 148923563 148923670 -53404677 + L1MDa LINE L1 4661 4760 -1780 1091 214 51 51 chr4 148923670 148924026 -53404321 - THE1C LTR MaLR 0 375 20 1251 171 123 15 chr4 148924140 148924409 -53403938 - MSTA LTR MaLR -130 298 1 34 55 0 0 chr4 148924414 148924469 -53403878 + AT_rich Low_complexity Low_complexity 1 55 0 2852 228 72 26 chr4 148924479 148925360 -53402987 + L1MDa LINE L1 4814 5734 -806 355 242 74 0 chr4 148925360 148925455 -53402892 + MER110 LTR ERV1 372 473 -18 22 0 0 0 chr4 148925686 148925708 -53402639 + AT_rich Low_complexity Low_complexity 1 22 0 814 167 56 0 chr4 148925763 148925889 -53402458 - FLAM_C SINE Alu 0 133 1 24 32 0 0 chr4 148926290 148926321 -53402026 + AT_rich Low_complexity Low_complexity 1 31 0 361 322 75 46 chr4 148927053 148927227 -53401120 + MIR3 SINE MIR 16 194 -14 224 258 0 48 chr4 148927355 148927417 -53400930 + MIR SINE MIR 201 259 -3 24 32 0 0 chr4 148927793 148927824 -53400523 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 148928018 148928040 -53400307 + AT_rich Low_complexity Low_complexity 1 22 0 2273 99 0 3 chr4 148928177 148928470 -53399877 - AluY SINE Alu -19 292 1 452 138 75 0 chr4 148928925 148929005 -53399342 - MER53 DNA DNA 0 189 104 7562 230 14 18 chr4 148929109 148931611 -53396736 + L1PA13 LINE L1 1646 4133 -2664 288 0 0 0 chr4 148932171 148932203 -53396144 + (A)n Simple_repeat Simple_repeat 1 32 0 4261 192 0 4 chr4 148932203 148933031 -53395316 + L1PA13 LINE L1 3072 3896 -2250 5682 118 14 13 chr4 148933040 148933769 -53394578 + L1PA13 LINE L1 4770 5499 -664 2217 119 0 10 chr4 148933769 148934080 -53394267 + AluSq SINE Alu 1 308 -5 5682 118 14 13 chr4 148934080 148934743 -53393604 + L1PA13 LINE L1 5499 6160 -3 25 65 0 0 chr4 148935158 148935204 -53393143 + AT_rich Low_complexity Low_complexity 1 46 0 515 285 54 8 chr4 148935962 148936204 -53392143 - L1M4 LINE L1 -3107 3039 2787 568 311 28 46 chr4 148938078 148938644 -53389703 + L1M4 LINE L1 3382 3937 -2209 1365 217 140 10 chr4 148938691 148938809 -53389538 + L1ME2 LINE L1 5507 5608 -556 2542 143 36 7 chr4 148938809 148939223 -53389124 - MSTB LTR MaLR 0 426 1 1365 217 140 10 chr4 148939223 148939611 -53388736 + L1ME2 LINE L1 5608 6120 -44 286 397 52 13 chr4 148939614 148939846 -53388501 + L2 LINE L2 2677 2917 -397 376 320 89 89 chr4 148939892 148940139 -53388208 + L2 LINE L2 3016 3262 -10 648 263 122 0 chr4 148940650 148940806 -53387541 - LTR33 LTR ERVL -346 175 1 2653 316 125 14 chr4 148941131 148942654 -53385693 - HERVL LTR ERVL -441 5213 3523 1309 322 85 8 chr4 148942698 148943217 -53385130 - HERVL LTR ERVL -2295 3469 2911 1118 316 49 15 chr4 148943198 148943606 -53384741 - HERVL LTR ERVL -3522 2242 1821 * 22 0 0 0 chr4 148943654 148943676 -53384671 + AT_rich Low_complexity Low_complexity 1 22 0 1547 154 138 3 chr4 148944011 148944329 -53384018 - MLT1A1 LTR MaLR 0 365 5 595 305 62 49 chr4 148944821 148945274 -53383073 - L1MC4a LINE L1 -1977 5831 5373 2046 70 0 12 chr4 148945286 148945542 -53382805 - AluY SINE Alu -20 291 39 418 252 53 88 chr4 148945549 148945890 -53382457 - L1MC4a LINE L1 -824 5322 4994 270 0 0 0 chr4 148945896 148945926 -53382421 + (TG)n Simple_repeat Simple_repeat 2 31 0 2289 137 28 19 chr4 148945999 148946358 -53381989 - THE1B LTR MaLR -2 362 1 9099 100 33 1 chr4 148946358 148947617 -53380730 - THE1B-int LTR MaLR 0 1580 282 577 255 36 83 chr4 148947616 148947759 -53380588 - L1MC4a LINE L1 -1162 4984 4859 * 2437 143 73 5 chr4 148947759 148948184 -53380163 - MSTB2 LTR MaLR 0 457 4 577 255 36 83 chr4 148948184 148948318 -53380029 - L1MC4a LINE L1 -1287 4859 4720 323 266 85 0 chr4 148948814 148948908 -53379439 + MIR SINE MIR 50 151 -111 1797 153 3 37 chr4 148949041 148949362 -53378985 - AluJb SINE Alu 0 312 3 269 308 149 9 chr4 148950632 148950739 -53377608 + MIR SINE MIR 14 135 -127 191 253 157 0 chr4 148952662 148952745 -53375602 - MIR3 SINE MIR -5 203 108 2600 59 0 0 chr4 148953026 148953332 -53375015 + AluSx SINE Alu 1 306 -6 723 170 122 0 chr4 148953333 148953480 -53374867 - Tigger1 DNA MER2_type -2253 165 1 261 173 0 19 chr4 148953472 148953485 -53374862 + MLT2B2 LTR ERVL 463 475 -40 * 360 0 0 0 chr4 148953485 148953525 -53374822 + (CA)n Simple_repeat Simple_repeat 2 41 0 261 173 0 19 chr4 148953525 148953563 -53374784 + MLT2B2 LTR ERVL 475 513 -2 575 279 97 59 chr4 148953566 148953803 -53374544 - MLT1J2 LTR MaLR -123 327 82 10362 193 48 14 chr4 148954428 148956038 -53372309 + L1MB3 LINE L1 2629 4183 -2000 1723 176 7 7 chr4 148956038 148956334 -53372013 + AluJo SINE Alu 1 296 -16 10362 193 48 14 chr4 148956334 148958081 -53370266 + L1MB3 LINE L1 4183 6100 -83 21 71 0 0 chr4 148959414 148959456 -53368891 + AT_rich Low_complexity Low_complexity 1 42 0 41805 48 22 3 chr4 148959591 148965629 -53362718 - L1PA2 LINE L1 -3 6152 1 509 321 47 11 chr4 148967590 148967780 -53360567 + MIR SINE MIR 5 201 -61 331 272 87 19 chr4 148968790 148968893 -53359454 - MIR SINE MIR -98 164 55 26 0 0 0 chr4 148969466 148969492 -53358855 + AT_rich Low_complexity Low_complexity 1 26 0 339 179 0 0 chr4 148970004 148970071 -53358276 + (TA)n Simple_repeat Simple_repeat 2 68 0 251 188 43 29 chr4 148970071 148970140 -53358207 - LTR66 LTR ERVL -171 439 370 5416 179 18 7 chr4 148970155 148971661 -53356686 - L1P5 LINE L1 -514 5640 4123 21 0 0 0 chr4 148973369 148973390 -53354957 + AT_rich Low_complexity Low_complexity 1 21 0 2831 13 0 0 chr4 148973489 148973798 -53354549 + AluYa5 SINE Alu 2 310 -1 1807 158 3 29 chr4 148974010 148974326 -53354021 + AluJb SINE Alu 2 309 -3 2337 79 6 25 chr4 148974579 148974894 -53353453 + AluY SINE Alu 1 309 -2 253 239 80 23 chr4 148974911 148974999 -53353348 - MER103 DNA DNA -66 100 8 504 267 27 59 chr4 148975635 148975822 -53352525 - MIR SINE MIR -71 191 11 885 242 9 35 chr4 148977724 148977955 -53350392 - MIR SINE MIR -34 228 4 210 294 0 0 chr4 148978956 148979024 -53349323 + A-rich Low_complexity Low_complexity 4 71 0 27 0 0 0 chr4 148980326 148980353 -53347994 + AT_rich Low_complexity Low_complexity 1 27 0 2003 87 8 4 chr4 148980442 148980708 -53347639 + AluSx SINE Alu 40 306 -6 675 37 0 0 chr4 148981180 148981262 -53347085 + (TA)n Simple_repeat Simple_repeat 2 83 0 2216 112 0 3 chr4 148981267 148981561 -53346786 + AluSq SINE Alu 1 293 -20 311 169 34 0 chr4 148981573 148981632 -53346715 + L2 LINE L2 3251 3311 -2 362 316 107 23 chr4 148981637 148981814 -53346533 + L1MC4a LINE L1 5867 6058 -1750 2143 103 20 7 chr4 148982679 148982981 -53345366 + AluSc SINE Alu 1 306 -3 1552 139 13 0 chr4 148982988 148983226 -53345121 - AluSg SINE Alu -69 241 1 263 309 202 0 chr4 148983436 148983530 -53344817 + L2 LINE L2 3122 3234 -38 24 0 0 0 chr4 148984925 148984949 -53343398 + AT_rich Low_complexity Low_complexity 1 24 0 183 156 0 0 chr4 148986607 148986639 -53341708 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 28 61 0 0 chr4 148987213 148987262 -53341085 + AT_rich Low_complexity Low_complexity 1 49 0 25 51 0 0 chr4 148987810 148987849 -53340498 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr4 148989641 148989664 -53338683 + AT_rich Low_complexity Low_complexity 1 23 0 1467 181 53 30 chr4 148991852 148992156 -53336191 - AluJo SINE Alu -1 311 1 655 240 132 42 chr4 148992637 148992924 -53335423 + MER46C DNA MER2_type 20 332 -6 1402 132 184 7 chr4 148993037 148993347 -53335000 - MLT1A1 LTR MaLR 0 365 1 1221 160 329 9 chr4 148993405 148993755 -53334592 - MER31B LTR ERV1 0 466 5 593 265 103 40 chr4 148994905 148995207 -53333140 + MLT1J1 LTR MaLR 1 321 -125 2376 87 10 6 chr4 148997628 148997940 -53330407 + AluSq SINE Alu 1 313 0 270 336 57 14 chr4 148998633 148998773 -53329574 - MIR SINE MIR -50 212 67 239 335 100 20 chr4 148999244 148999495 -53328852 + L1ME LINE L1 5481 5751 -370 482 192 10 10 chr4 148999544 148999643 -53328704 - FLAM_A SINE Alu -9 133 35 241 255 0 0 chr4 149000218 149000269 -53328078 - L2 LINE L2 -2 3270 3220 274 263 61 10 chr4 149001587 149001686 -53326661 + MER91C DNA MER1_type 36 139 -1 911 241 70 4 chr4 149002604 149002845 -53325502 + MIR SINE MIR 2 258 -4 340 286 92 34 chr4 149002881 149003000 -53325347 - MIR3 SINE MIR -30 178 53 301 261 159 67 chr4 149003187 149003382 -53324965 - MIR SINE MIR -44 218 6 308 278 120 96 chr4 149004238 149004612 -53323735 + L1M2 LINE L1 855 1237 -5612 485 247 86 19 chr4 149005580 149005802 -53322545 + L1MEd LINE L1 1105 1375 -4863 2979 133 31 47 chr4 149005837 149006414 -53321933 - L1MB2 LINE L1 -2 6169 5602 249 229 48 0 chr4 149006524 149006595 -53321752 + L1P4 LINE L1 5493 5569 -596 358 304 125 27 chr4 149006624 149006920 -53321427 + L1M4 LINE L1 4912 5236 -910 269 278 46 35 chr4 149006928 149006941 -53321406 + L1P5 LINE L1 5269 5280 -871 2418 55 17 0 chr4 149006941 149007234 -53321113 + AluY SINE Alu 1 298 -13 269 278 46 35 chr4 149007234 149007393 -53320954 + L1P5 LINE L1 5280 5443 -708 541 285 29 0 chr4 149007548 149007685 -53320662 + MER5B DNA MER1_type 8 148 -30 1229 238 15 12 chr4 149007717 149008057 -53320290 + L1MEd LINE L1 2582 2922 -3207 243 77 26 0 chr4 149008069 149008108 -53320239 - MER4C LTR ERV1 -373 92 53 932 121 7 0 chr4 149008118 149008259 -53320088 + AluSp/q SINE Alu 172 313 0 2654 135 26 46 chr4 149008422 149008926 -53319421 + L1MA8 LINE L1 5783 6276 -15 869 221 108 4 chr4 149008943 149009183 -53319164 + Charlie8 DNA MER1_type 378 642 -1775 209 304 130 10 chr4 149009319 149009526 -53318821 - L2 LINE L2 -1117 2197 1966 2286 202 87 7 chr4 149009604 149010143 -53318204 - MER119 DNA MER1_type 0 583 2 389 314 114 11 chr4 149010854 149011029 -53317318 + MIR SINE MIR 47 239 -23 282 200 15 0 chr4 149011106 149011171 -53317176 + MIR SINE MIR 57 122 -86 270 207 0 0 chr4 149011177 149011235 -53317112 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 22 35 0 0 chr4 149012980 149013009 -53315338 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 149013150 149013179 -53315168 + AT_rich Low_complexity Low_complexity 1 29 0 277 229 229 9 chr4 149013712 149013817 -53314530 + MIR SINE MIR 63 190 -72 202 170 19 57 chr4 149013853 149013906 -53314441 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 * 209 271 0 12 chr4 149013885 149013970 -53314377 + (TAAA)n Simple_repeat Simple_repeat 4 87 0 1032 286 113 16 chr4 149014853 149015276 -53313071 - LTR16B LTR ERVL 0 464 1 702 249 12 17 chr4 149015418 149015591 -53312756 - MIR SINE MIR -85 177 6 2294 70 0 27 chr4 149015855 149016154 -53312193 + AluSg SINE Alu 14 304 -6 1548 226 9 41 chr4 149016257 149016460 -53311887 - L1M4 LINE L1 -1069 5077 4869 17527 33 1 0 chr4 149016460 149019366 -53308981 - L1PA4 LINE L1 0 6155 3262 1548 226 9 41 chr4 149019366 149019623 -53308724 - L1M4 LINE L1 -1277 4869 4632 * 4958 175 7 12 chr4 149019619 149020731 -53307616 + L1MB5 LINE L1 5071 6173 -1 598 249 204 5 chr4 149021519 149021720 -53306627 - MIR SINE MIR -3 259 19 387 154 0 0 chr4 149021919 149021984 -53306363 - L1MB1 LINE L1 -289 5879 5815 838 161 0 0 chr4 149021990 149022120 -53306227 - FLAM_C SINE Alu -3 130 1 1333 154 21 8 chr4 149022121 149022361 -53305986 + L1MB1 LINE L1 5925 6167 -1 1448 148 25 30 chr4 149022767 149023004 -53305343 + AluJo SINE Alu 47 282 -30 21 0 0 0 chr4 149023004 149023025 -53305322 + AT_rich Low_complexity Low_complexity 1 21 0 2283 224 111 106 chr4 149023366 149024263 -53304084 - L2 LINE L2 -3 3310 2419 2161 120 0 25 chr4 149024263 149024580 -53303767 + AluSc SINE Alu 1 309 0 2283 224 111 106 chr4 149024580 149024720 -53303627 - L2 LINE L2 -894 2419 2281 2283 151 57 0 chr4 149024720 149025125 -53303222 + MSTA LTR MaLR 1 428 0 2283 224 111 106 chr4 149025125 149025441 -53302906 - L2 LINE L2 -1032 2281 1926 408 273 200 13 chr4 149025857 149026007 -53302340 + MER91A DNA MER1_type 2 179 -17 6000 128 31 10 chr4 149026495 149028012 -53300335 - L1PA16 LINE L1 0 6166 4618 268 189 295 0 chr4 149028226 149028321 -53300026 - L1ME3A LINE L1 -19 6151 6029 182 345 12 0 chr4 149028769 149028853 -53299494 - MIR SINE MIR 0 262 178 527 224 95 0 chr4 149029305 149029421 -53298926 - FLAM_A SINE Alu -6 127 1 204 238 127 0 chr4 149030324 149030387 -53297960 - L2 LINE L2 -46 3226 3156 218 29 59 0 chr4 149030467 149030501 -53297846 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 7310 231 45 26 chr4 149030546 149033490 -53294857 - L1MC3 LINE L1 -743 5821 3616 2479 137 91 13 chr4 149033490 149033885 -53294462 - MSTB LTR MaLR 0 426 1 7310 231 45 26 chr4 149033885 149033981 -53294366 - L1MC3 LINE L1 -2948 3616 3523 4345 170 10 22 chr4 149033989 149034772 -53293575 - MLT1A1-int LTR MaLR -961 774 1 1341 193 77 51 chr4 149034772 149035125 -53293222 - MLT1A1 LTR MaLR 0 365 4 1804 263 45 81 chr4 149035129 149036413 -53291934 - L1MC3 LINE L1 -4851 1194 354 4334 76 26 2 chr4 149036413 149036954 -53291393 - MER41A LTR ERV1 0 554 1 1804 263 45 81 chr4 149036954 149037269 -53291078 - L1MC3 LINE L1 -5691 354 29 2160 122 3 0 chr4 149037549 149037843 -53290504 + AluSp SINE Alu 1 295 -18 466 82 0 0 chr4 149038047 149038108 -53290239 - LTR2B LTR ERV1 0 490 430 4435 16 0 0 chr4 149038108 149038847 -53289500 - L1PA2 LINE L1 -412 5743 5005 3591 18 0 0 chr4 149038848 149039235 -53289112 + L1PA2 LINE L1 5762 6148 -7 209 0 23 68 chr4 149039239 149039283 -53289064 + (TAAAA)n Simple_repeat Simple_repeat 4 45 0 1753 196 68 28 chr4 149039309 149039706 -53288641 - LTR2B LTR ERV1 -46 444 32 383 282 191 9 chr4 149041429 149041649 -53286698 + MIR SINE MIR 3 262 0 1520 179 14 28 chr4 149043099 149043389 -53284958 + AluJo SINE Alu 6 291 -21 28 0 0 0 chr4 149043389 149043417 -53284930 + AT_rich Low_complexity Low_complexity 1 28 0 714 277 74 21 chr4 149043950 149044192 -53284155 - MIR SINE MIR 0 262 8 920 154 30 53 chr4 149044579 149044748 -53283599 - FRAM SINE Alu -14 162 1 330 258 21 0 chr4 149046633 149046726 -53281621 + MIR3 SINE MIR 104 198 -10 1536 202 109 3 chr4 149048572 149048894 -53279453 - MLT1A1 LTR MaLR -9 356 1 444 303 80 12 chr4 149049057 149049219 -53279128 + LTR33A LTR ERVL 65 237 -286 256 261 109 0 chr4 149049277 149049415 -53278932 + LTR33A LTR ERVL 365 517 -6 2868 102 3 0 chr4 149049430 149049793 -53278554 + THE1B LTR MaLR 1 364 0 250 336 77 63 chr4 149051618 149051904 -53276443 + L2 LINE L2 2981 3270 -2 1890 167 0 6 chr4 149053694 149054006 -53274341 + AluJb SINE Alu 1 310 -2 629 310 62 0 chr4 149055686 149055928 -53272419 + MLT1J1 LTR MaLR 21 277 -169 232 222 50 61 chr4 149055958 149056057 -53272290 + MLT1J2 LTR MaLR 353 450 0 543 148 0 0 chr4 149056611 149056699 -53271648 + L1MA3 LINE L1 6218 6305 0 31 20 0 20 chr4 149056699 149056710 -53271637 + AT_rich Low_complexity Low_complexity 1 11 -37 1768 172 0 7 chr4 149056710 149057000 -53271347 + AluJo SINE Alu 1 288 -24 31 20 0 20 chr4 149057000 149057037 -53271310 + AT_rich Low_complexity Low_complexity 11 48 0 468 280 20 20 chr4 149059709 149059859 -53268488 - MER5B DNA MER1_type 0 178 29 2442 34 40 7 chr4 149059867 149060164 -53268183 - AluY SINE Alu 0 311 5 951 257 82 59 chr4 149062025 149062464 -53265883 + LTR16B LTR ERVL 3 451 -13 1987 321 50 27 chr4 149062473 149063339 -53265008 + HERV16 LTR ERVL 7 897 -4099 2020 157 0 0 chr4 149063339 149063638 -53264709 + AluSx SINE Alu 1 299 -13 1987 321 50 27 chr4 149063638 149063698 -53264649 + HERV16 LTR ERVL 897 954 -4042 1181 290 99 3 chr4 149063704 149064066 -53264281 + HERV16 LTR ERVL 1612 2008 -2988 551 302 24 0 chr4 149064050 149064219 -53264128 + HERV16 LTR ERVL 2363 2535 -3119 * 844 314 95 45 chr4 149064281 149064983 -53263364 + HERV16 LTR ERVL 2655 3471 -2293 2060 121 0 7 chr4 149064983 149065293 -53263054 - AluSx SINE Alu 0 312 5 844 314 95 45 chr4 149065293 149065523 -53262824 + HERV16 LTR ERVL 3471 3688 -2076 1036 203 68 32 chr4 149065524 149065775 -53262572 - LTR40b LTR ERVL -6 456 197 874 345 76 29 chr4 149065775 149066459 -53261888 + HERV16 LTR ERVL 3911 4626 -1138 4242 137 15 25 chr4 149067091 149067808 -53260539 + L1PBa LINE L1 3 712 -6151 22 0 0 0 chr4 149067921 149067943 -53260404 + AT_rich Low_complexity Low_complexity 1 22 0 280 295 65 46 chr4 149068655 149068834 -53259513 - MIR3 SINE MIR -73 189 14 1031 219 39 15 chr4 149068882 149069087 -53259260 + MER63A DNA MER1_type 1 210 0 2299 167 82 7 chr4 149070074 149070500 -53257847 + Tigger6b DNA MER2_type 6 463 -1134 * 2982 175 54 8 chr4 149070481 149071075 -53257272 + Tigger6b DNA MER2_type 977 1597 0 264 340 56 35 chr4 149071156 149071300 -53257047 + MIR SINE MIR 6 152 -110 28 79 0 0 chr4 149072316 149072379 -53255968 + AT_rich Low_complexity Low_complexity 1 63 0 617 282 102 48 chr4 149073451 149074039 -53254308 - L1MC5 LINE L1 -44 7917 7298 231 184 61 0 chr4 149074591 149074640 -53253707 - L1MC4a LINE L1 -714 7094 7043 276 313 71 62 chr4 149074844 149075084 -53253263 + L2 LINE L2 2832 3073 -199 1744 164 0 23 chr4 149075170 149075474 -53252873 - AluJb SINE Alu -15 297 1 531 0 0 0 chr4 149075477 149075510 -53252837 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 531 0 0 0 chr4 149075510 149075569 -53252778 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 23 78 0 0 chr4 149076354 149076405 -53251942 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr4 149077131 149077152 -53251195 + AT_rich Low_complexity Low_complexity 1 21 0 333 237 27 70 chr4 149077224 149077370 -53250977 - HAL1b LINE L1 -2 6119 1213 545 278 38 45 chr4 149077433 149077699 -53250648 - L1MC4a LINE L1 -1857 5951 5688 993 261 16 4 chr4 149077707 149077952 -53250395 - MIR SINE MIR -13 249 2 1732 166 3 14 chr4 149077969 149078280 -53250067 - AluJo SINE Alu 0 312 5 463 241 43 0 chr4 149078294 149078410 -53249937 - L1MC4a LINE L1 -440 5681 5561 375 245 101 75 chr4 149078436 149078624 -53249723 + MIR SINE MIR 1 193 -69 244 316 25 3 chr4 149079771 149079876 -53248471 + MIR SINE MIR 45 149 -62 1087 260 38 38 chr4 149080058 149080086 -53248261 - L1MC4a LINE L1 -748 5398 5371 2392 101 0 0 chr4 149080086 149080394 -53247953 - AluSx SINE Alu -4 308 1 1087 260 38 38 chr4 149080394 149080815 -53247532 - L1MC4a LINE L1 -774 5372 4949 285 343 28 9 chr4 149080965 149081073 -53247274 + L2 LINE L2 2920 3029 -243 301 247 82 0 chr4 149081626 149081711 -53246636 + L2 LINE L2 3203 3294 -19 466 272 41 30 chr4 149082805 149082974 -53245373 + MIR SINE MIR 83 253 -9 811 183 6 57 chr4 149083031 149083206 -53245141 - MER58B DNA MER1_type 0 341 176 194 367 0 55 chr4 149083308 149083417 -53244930 + L2 LINE L2 2954 3056 -216 23 78 0 0 chr4 149084015 149084066 -53244281 + AT_rich Low_complexity Low_complexity 1 51 0 22 70 0 0 chr4 149084083 149084126 -53244221 + AT_rich Low_complexity Low_complexity 1 43 0 1636 240 41 25 chr4 149084324 149084961 -53243386 + L1ME1 LINE L1 4684 5330 -816 847 175 102 12 chr4 149084962 149085011 -53243336 + AluJo SINE Alu 72 115 -197 528 16 0 0 chr4 149085011 149085072 -53243275 + (CA)n Simple_repeat Simple_repeat 2 62 0 847 175 102 12 chr4 149085072 149085188 -53243159 + AluJo SINE Alu 115 252 -60 2232 208 71 25 chr4 149085191 149085329 -53243018 + L1ME1 LINE L1 5331 5461 -705 1767 150 15 0 chr4 149085329 149085595 -53242752 + AluJo SINE Alu 22 291 -21 2232 208 71 25 chr4 149085595 149086128 -53242219 + L1ME1 LINE L1 5461 6033 -133 281 329 49 63 chr4 149086163 149086449 -53241898 - L2 LINE L2 -675 2639 2358 186 78 16 78 chr4 149086866 149086930 -53241417 + (TA)n Simple_repeat Simple_repeat 1 60 0 377 276 29 12 chr4 149086932 149087102 -53241245 + L1ME4a LINE L1 5936 6108 -13 335 282 11 44 chr4 149087114 149087295 -53241052 + L1ME LINE L1 5614 5788 -333 325 302 54 8 chr4 149087339 149087468 -53240879 + MIR SINE MIR 72 206 -56 4857 150 65 46 chr4 149087469 149088751 -53239596 + L1M2 LINE L1 4287 5580 -711 7513 34 1 1 chr4 149088751 149089848 -53238499 + L1PA3 LINE L1 5058 6155 0 4857 150 65 46 chr4 149089848 149089944 -53238403 + L1M2 LINE L1 5580 5673 -618 950 218 0 6 chr4 149089949 149090123 -53238224 + AluJb SINE Alu 140 312 0 991 252 106 66 chr4 149090222 149090642 -53237705 + L2 LINE L2 2706 3157 -156 1545 49 74 0 chr4 149090642 149090845 -53237502 - L1PA7 LINE L1 -3 6151 5934 991 252 106 66 chr4 149090845 149091009 -53237338 + L2 LINE L2 3157 3313 0 1051 134 91 40 chr4 149091712 149091965 -53236382 - Charlie5 DNA MER1_type 0 2616 2351 636 204 58 37 chr4 149091962 149092153 -53236194 - Charlie5 DNA MER1_type -2413 199 5 * 465 256 124 0 chr4 149092162 149092291 -53236056 + MER5A DNA MER1_type 39 183 -6 232 360 23 0 chr4 149092318 149092404 -53235943 + L2 LINE L2 2554 2641 -673 1906 153 130 18 chr4 149092976 149093361 -53234986 + MSTA LTR MaLR 1 428 0 555 290 126 4 chr4 149093912 149094143 -53234204 - L1ME3A LINE L1 -281 5958 5700 336 293 253 9 chr4 149094249 149094474 -53233873 - L1ME3A LINE L1 -521 5710 5431 345 227 116 44 chr4 149094480 149094512 -53233835 - L1ME3A LINE L1 -3778 2437 2409 3039 163 16 0 chr4 149094512 149095026 -53233321 + LTR45 LTR ERV1 4 525 0 345 227 116 44 chr4 149095026 149095218 -53233129 - L1ME3A LINE L1 -3806 2409 2197 432 274 58 40 chr4 149095225 149095448 -53232899 - L1ME3A LINE L1 -4309 2087 1861 301 301 110 19 chr4 149096195 149096410 -53231937 + MLT1H LTR MaLR 1 233 -316 263 244 7 104 chr4 149096597 149096695 -53231652 + MLT1G1 LTR MaLR 447 530 -65 1691 121 4 0 chr4 149096695 149096927 -53231420 + AluSg SINE Alu 64 296 -14 263 244 7 104 chr4 149096927 149096963 -53231384 + MLT1G1 LTR MaLR 530 568 -27 2293 75 0 0 chr4 149097368 149097646 -53230701 - AluY SINE Alu -33 278 1 839 273 191 9 chr4 149098436 149098755 -53229592 + L2 LINE L2 2069 2445 -869 992 184 39 10 chr4 149098759 149098965 -53229382 + MER20 DNA MER1_type 7 218 -1 958 250 188 13 chr4 149099001 149099495 -53228852 + L2 LINE L2 2659 3239 -74 364 221 23 122 chr4 149099555 149099686 -53228661 - L2 LINE L2 0 3313 3196 21 43 0 22 chr4 149099755 149099780 -53228567 + AT_rich Low_complexity Low_complexity 1 26 -19 2182 114 7 16 chr4 149099780 149100088 -53228259 - AluSg SINE Alu -4 306 2 21 43 0 22 chr4 149100088 149100108 -53228239 + AT_rich Low_complexity Low_complexity 26 45 0 1940 110 24 14 chr4 149100612 149100902 -53227445 + AluSq SINE Alu 1 293 -20 581 146 105 23 chr4 149101388 149101559 -53226788 - MER53 DNA DNA 0 189 5 384 345 62 23 chr4 149102838 149103096 -53225251 - LTR33 LTR ERVL -253 268 1 207 363 88 6 chr4 149103128 149103288 -53225059 + L2 LINE L2 2258 2430 -884 1291 100 130 0 chr4 149103829 149103932 -53224415 + MER30 DNA MER1_type 1 89 -141 243 61 0 0 chr4 149103932 149103965 -53224382 + (CA)n Simple_repeat Simple_repeat 2 34 0 1291 100 130 0 chr4 149103965 149104061 -53224286 + MER30 DNA MER1_type 89 226 -4 1432 139 27 0 chr4 149104427 149104685 -53223662 + L1MA7 LINE L1 6026 6290 -1 182 286 36 36 chr4 149106112 149106196 -53222151 + MIR SINE MIR 71 154 -108 3095 101 43 12 chr4 149106241 149106726 -53221621 + L1MA4A LINE L1 5792 6291 -12 209 176 0 0 chr4 149106726 149106781 -53221566 + (CA)n Simple_repeat Simple_repeat 1 55 0 261 224 0 15 chr4 149107137 149107204 -53221143 + HsTC2 DNA Tc2 14 79 -1819 262 254 0 0 chr4 149107311 149107366 -53220981 - L2 LINE L2 -17 3296 3242 342 331 119 19 chr4 149107462 149107622 -53220725 + L2 LINE L2 3008 3183 -89 2253 128 0 0 chr4 149107627 149107939 -53220408 - AluSx SINE Alu 0 312 1 885 199 57 17 chr4 149108424 149108600 -53219747 - MER5A DNA MER1_type -6 183 1 196 317 61 24 chr4 149108711 149108793 -53219554 - L3b LINE CR1 -134 1449 1365 2305 101 13 0 chr4 149109021 149109327 -53219020 - AluSg SINE Alu 0 310 1 383 303 153 32 chr4 149109451 149109830 -53218517 + MLT1H LTR MaLR 123 547 -2 388 311 105 28 chr4 149109984 149110232 -53218115 + MLT1K LTR MaLR 322 588 0 529 319 76 32 chr4 149110382 149110567 -53217780 + MER91A DNA MER1_type 1 193 -3 882 216 0 12 chr4 149112169 149112331 -53216016 + FRAM SINE Alu 2 161 -15 4061 67 4 3 chr4 149112333 149118404 -53209943 + L1PA5 LINE L1 3 6149 -5 254 292 53 18 chr4 149119442 149119555 -53208792 - HERVL18 LTR ERVL -3747 2300 2184 4724 149 43 25 chr4 149119979 149120866 -53207481 + MER4D LTR ERV1 1 903 0 1790 168 40 3 chr4 149121157 149121454 -53206893 - AluJb SINE Alu 0 312 5 10707 33 1 0 chr4 149122262 149123609 -53204738 + L1P LINE L1 3699 5047 -1099 646 271 18 22 chr4 149123715 149123992 -53204355 + L1M4 LINE L1 2664 2939 -3207 903 151 0 0 chr4 149124053 149124192 -53204155 + AluSp/q SINE Alu 172 310 -3 3013 114 26 2 chr4 149125101 149125555 -53202792 + MER4C LTR ERV1 1 465 0 29 47 0 0 chr4 149125636 149125679 -53202668 + AT_rich Low_complexity Low_complexity 1 43 0 2146 121 0 3 chr4 149126375 149126665 -53201682 + AluSc SINE Alu 1 289 -20 225 0 0 0 chr4 149126791 149126816 -53201531 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1987 131 4 0 chr4 149126854 149127129 -53201218 - AluSx SINE Alu -36 276 1 198 103 0 0 chr4 149127853 149127882 -53200465 + (A)n Simple_repeat Simple_repeat 1 29 0 1225 214 103 16 chr4 149128039 149128064 -53200283 - LTR40c LTR ERVL 0 465 444 16595 119 26 39 chr4 149128064 149130818 -53197529 - Tigger2 DNA MER2_type 0 2718 1 1225 214 103 16 chr4 149130818 149131180 -53197167 - LTR40c LTR ERVL -21 444 44 2127 130 10 0 chr4 149131517 149131824 -53196523 + AluSx SINE Alu 1 310 -2 1820 173 21 0 chr4 149132526 149132815 -53195532 - AluJb SINE Alu -17 295 1 23 33 0 0 chr4 149133342 149133372 -53194975 + AT_rich Low_complexity Low_complexity 1 30 0 241 294 137 10 chr4 149133406 149133508 -53194839 + L2 LINE L2 3199 3313 0 297 286 163 14 chr4 149134094 149134241 -53194106 - MIR3 SINE MIR -3 205 37 297 267 112 48 chr4 149134317 149134568 -53193779 + MLT1H1-int LTR MaLR 1456 1722 -13 1060 281 50 40 chr4 149134598 149135147 -53193200 + MLT1H1 LTR MaLR 1 555 0 1107 149 36 0 chr4 149135561 149135756 -53192591 - MER105 DNA DNA -2 202 1 411 286 62 9 chr4 149135800 149135912 -53192435 - MIR SINE MIR -133 129 12 2086 112 0 14 chr4 149137034 149137348 -53190999 + AluSx SINE Alu 1 310 0 1982 239 122 2 chr4 149137465 149138054 -53190293 + L1MC4 LINE L1 7242 7901 -141 583 262 165 10 chr4 149138790 149138996 -53189351 + MIR SINE MIR 25 262 0 370 65 32 0 chr4 149139049 149139111 -53189236 + (TA)n Simple_repeat Simple_repeat 1 64 0 1444 114 59 0 chr4 149139111 149139330 -53189017 - MLT2A2 LTR ERVL -221 232 1 207 0 0 0 chr4 149139775 149139798 -53188549 + (A)n Simple_repeat Simple_repeat 1 23 0 2183 81 47 7 chr4 149140611 149140908 -53187439 + AluSc SINE Alu 1 309 0 2255 111 0 0 chr4 149143094 149143400 -53184947 - AluSq SINE Alu -7 306 1 527 281 156 6 chr4 149143463 149143678 -53184669 - MIR SINE MIR -10 252 7 194 241 17 52 chr4 149143701 149143759 -53184588 + L2 LINE L2 3208 3263 -9 494 316 113 45 chr4 149143961 149144341 -53184006 - L2 LINE L2 -50 3222 2817 501 310 176 13 chr4 149144443 149144836 -53183511 - L2 LINE L2 -626 2688 2232 608 289 59 51 chr4 149144837 149145243 -53183104 + Charlie8 DNA MER1_type 1 397 -2020 2790 142 13 0 chr4 149145243 149145702 -53182645 + L1M2 LINE L1 5300 5764 -527 7286 31 8 0 chr4 149145808 149147186 -53181161 - L1PA4 LINE L1 -11 6144 4756 3707 16 0 0 chr4 149147186 149147619 -53180728 + L1PA4 LINE L1 4325 4757 -1389 3657 43 0 5 chr4 149147617 149148062 -53180285 - L1P2 LINE L1 -371 5784 5342 * 695 296 51 36 chr4 149149196 149149531 -53178816 + L2 LINE L2 2848 3187 -126 1290 131 88 39 chr4 149152055 149152361 -53175986 + MER33 DNA MER1_type 4 324 0 318 200 67 83 chr4 149153916 149154036 -53174311 - MLT1H LTR MaLR 0 549 450 304 208 14 28 chr4 149154164 149154236 -53174111 - MLT1H LTR MaLR -375 174 104 30 59 0 0 chr4 149154509 149154560 -53173787 + AT_rich Low_complexity Low_complexity 1 51 0 657 196 140 0 chr4 149155070 149155213 -53173134 - MER5A DNA MER1_type -1 188 26 1048 296 86 29 chr4 149155579 149156055 -53172292 + L2 LINE L2 2811 3313 0 437 264 187 6 chr4 149156900 149157082 -53171265 + MIR SINE MIR 46 260 -2 3384 257 106 14 chr4 149157719 149158189 -53170158 + L1ME2 LINE L1 3309 3735 -2411 2020 143 0 7 chr4 149158189 149158489 -53169858 - AluSx SINE Alu -14 298 1 3384 257 106 14 chr4 149158489 149159331 -53169016 + L1ME2 LINE L1 3735 4741 -1405 1899 217 143 28 chr4 149159341 149160440 -53167907 + L1ME2 LINE L1 4797 6018 -146 237 91 0 0 chr4 149160442 149160475 -53167872 + MER3 DNA MER1_type 16 48 -161 381 208 94 0 chr4 149160481 149160577 -53167770 + L1ME2 LINE L1 6060 6164 0 206 294 39 8 chr4 149160586 149160687 -53167660 + MIR SINE MIR 6 108 -100 209 321 60 0 chr4 149160702 149160786 -53167561 - L2 LINE L2 -4 3309 3221 303 28 0 0 chr4 149161156 149161192 -53167155 + (TC)n Simple_repeat Simple_repeat 1 36 0 288 87 0 22 chr4 149161192 149161238 -53167109 - MER95 LTR ERV -382 49 5 * 339 176 108 10 chr4 149161232 149161334 -53167013 + MER95 LTR ERV 320 431 0 373 250 258 23 chr4 149161925 149162057 -53166290 - MIR3 SINE MIR -21 187 25 271 352 69 60 chr4 149162125 149162341 -53166006 + L2 LINE L2 2997 3214 -58 25 51 0 0 chr4 149163398 149163437 -53164910 + AT_rich Low_complexity Low_complexity 1 39 0 50 51 0 0 chr4 149163756 149163834 -53164513 + AT_rich Low_complexity Low_complexity 1 78 0 398 342 89 0 chr4 149164135 149164293 -53164054 - MIR3 SINE MIR -7 201 30 349 267 50 0 chr4 149164468 149164569 -53163778 + MIR SINE MIR 132 237 -25 2225 76 52 0 chr4 149165370 149165660 -53162687 - AluY SINE Alu -6 305 1 1902 146 38 0 chr4 149166486 149166774 -53161573 + AluJo SINE Alu 1 299 -13 279 333 43 0 chr4 149168133 149168250 -53160097 + L3b LINE CR1 1268 1389 -194 468 327 121 54 chr4 149170460 149170907 -53157440 + L2 LINE L2 2607 3089 -183 258 292 79 34 chr4 149170868 149170957 -53157390 - L2 LINE L2 -20 3252 3160 * 829 305 116 22 chr4 149170955 149171506 -53156841 + L2 LINE L2 1687 2289 -1025 5960 39 0 0 chr4 149171793 149172504 -53155843 + L1PA5 LINE L1 5436 6146 -8 21 0 0 0 chr4 149172534 149172555 -53155792 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 149172599 149172636 -53155711 + AT_rich Low_complexity Low_complexity 1 37 0 585 250 65 0 chr4 149173590 149173758 -53154589 - L1MB7 LINE L1 -7 6177 5999 478 253 77 44 chr4 149174641 149174823 -53153524 + MIR SINE MIR 70 257 -5 601 202 0 112 chr4 149174864 149174912 -53153435 - L1MA10 LINE L1 -3 6331 6284 804 243 52 81 chr4 149174912 149175332 -53153015 - L1ME1 LINE L1 -23 6143 5736 189 0 0 0 chr4 149175372 149175393 -53152954 + (TG)n Simple_repeat Simple_repeat 2 22 0 1630 202 26 3 chr4 149175696 149175998 -53152349 - AluJb SINE Alu -1 311 3 21 0 0 0 chr4 149177926 149177947 -53150400 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 149178049 149178070 -53150277 + AT_rich Low_complexity Low_complexity 1 21 0 237 65 0 0 chr4 149180173 149180204 -53148143 + (TG)n Simple_repeat Simple_repeat 2 32 0 545 267 169 45 chr4 149180293 149181229 -53147118 + L1M4 LINE L1 3005 4056 -2090 314 313 79 50 chr4 149181368 149181494 -53146853 - L1M4 LINE L1 -1610 4536 4415 2249 95 0 7 chr4 149181494 149181789 -53146558 - AluSx SINE Alu -19 293 1 314 313 79 50 chr4 149181789 149181940 -53146407 - L1M4 LINE L1 -1731 4415 4251 338 104 0 124 chr4 149181964 149182047 -53146300 - L1M4 LINE L1 -1973 4173 4100 331 280 90 62 chr4 149182061 149182373 -53145974 + MLT1I LTR MaLR 19 372 -177 327 162 55 0 chr4 149182405 149182484 -53145863 + L1ME3A LINE L1 5867 5953 -225 348 270 29 15 chr4 149182598 149182735 -53145612 + L1ME3A LINE L1 6027 6165 -5 285 294 120 0 chr4 149183025 149183117 -53145230 + L2 LINE L2 3168 3270 -2 678 171 62 0 chr4 149183261 149183393 -53144954 - LTR16C LTR ERVL 0 491 352 1427 147 22 4 chr4 149183393 149183618 -53144729 + MER49 LTR ERV1 1 229 -694 368 286 137 31 chr4 149183631 149183858 -53144489 - L1M4 LINE L1 -1681 4465 4215 3651 154 84 12 chr4 149183859 149184516 -53143831 + MER49 LTR ERV1 219 922 -1 633 252 87 64 chr4 149184555 149184821 -53143526 - LTR16C LTR ERVL -219 272 1 27 73 0 0 chr4 149185501 149185556 -53142791 + AT_rich Low_complexity Low_complexity 1 55 0 1064 168 6 18 chr4 149186068 149186235 -53142112 - FRAM SINE Alu -1 165 1 1910 104 25 0 chr4 149186788 149187066 -53141281 - L1MB4 LINE L1 -60 6120 5836 26 30 0 0 chr4 149187081 149187114 -53141233 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr4 149187289 149187310 -53141037 + AT_rich Low_complexity Low_complexity 1 21 0 1759 154 50 0 chr4 149187377 149187657 -53140690 - AluJo SINE Alu -18 294 1 186 43 0 0 chr4 149187844 149187867 -53140480 + (CAAAT)n Simple_repeat Simple_repeat 4 26 0 24 0 0 0 chr4 149188502 149188526 -53139821 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr4 149189549 149189578 -53138769 + AT_rich Low_complexity Low_complexity 1 29 0 2297 112 3 0 chr4 149189622 149189925 -53138422 - AluSx SINE Alu -8 304 1 343 216 126 0 chr4 149190512 149190623 -53137724 + MIR SINE MIR 120 244 -18 274 336 25 8 chr4 149190936 149191055 -53137292 + L2 LINE L2 1822 1942 -1372 604 326 186 17 chr4 149191182 149191807 -53136540 + L2 LINE L2 2338 3054 -218 579 208 10 0 chr4 149191879 149191980 -53136367 + Tigger3(Golem) DNA MER2_type 41 142 -2887 * 1401 169 90 0 chr4 149191950 149192217 -53136130 + MER7A DNA MER2_type 58 346 0 193 267 67 17 chr4 149192323 149192383 -53135964 + L2 LINE L2 3210 3272 0 222 255 0 0 chr4 149192774 149192825 -53135522 + MIR SINE MIR 65 115 -147 872 203 119 13 chr4 149192905 149193132 -53135215 + MIR SINE MIR 2 252 -10 217 317 84 12 chr4 149193344 149193488 -53134859 - MER5A DNA MER1_type -4 174 22 432 0 0 0 chr4 149194127 149194175 -53134172 + (TG)n Simple_repeat Simple_repeat 2 49 0 227 274 98 59 chr4 149195705 149195807 -53132540 + MIR SINE MIR 40 145 -117 1126 236 186 28 chr4 149197444 149197902 -53130445 + MLT1G LTR MaLR 10 539 -51 38 89 0 0 chr4 149199116 149199217 -53129130 + AT_rich Low_complexity Low_complexity 1 101 0 331 285 39 77 chr4 149199239 149199321 -53129026 + L1ME1 LINE L1 5528 5612 -509 2075 145 0 16 chr4 149199321 149199638 -53128709 - AluSx SINE Alu 0 312 1 331 285 39 77 chr4 149199638 149199762 -53128585 + L1ME1 LINE L1 5612 5726 -395 354 266 105 16 chr4 149200013 149200137 -53128210 + MIR SINE MIR 4 138 -124 685 285 75 31 chr4 149200261 149200489 -53127858 - MIR SINE MIR -21 241 4 401 257 133 53 chr4 149200809 149201035 -53127312 + L3 LINE CR1 1213 1456 -121 510 288 52 31 chr4 149201108 149201299 -53127048 + MIR SINE MIR 68 262 0 1603 143 82 17 chr4 149202272 149202565 -53125782 - AluJb SINE Alu 0 312 1 202 349 28 82 chr4 149203135 149203390 -53124957 - L2 LINE L2 -191 3081 2841 1730 143 51 45 chr4 149203533 149203868 -53124479 - MLT1C LTR MaLR -130 337 1 1825 172 3 0 chr4 149203942 149204239 -53124108 + 7SLRNA srpRNA srpRNA 1 298 -22 2161 123 10 0 chr4 149206415 149206723 -53121624 + AluSx SINE Alu 1 311 -1 327 182 0 0 chr4 149206731 149206808 -53121539 + GA-rich Low_complexity Low_complexity 2 78 0 2175 91 0 7 chr4 149207601 149207924 -53120423 - AluY SINE Alu 0 321 1 2239 113 0 0 chr4 149207929 149208231 -53120116 - AluSx SINE Alu -10 302 1 2172 47 16 0 chr4 149208496 149208753 -53119594 + L1PA7 LINE L1 5892 6152 -2 235 220 0 34 chr4 149209132 149209191 -53119156 + HAL1b LINE L1 663 719 -629 1688 187 51 44 chr4 149209345 149209735 -53118612 + L1ME1 LINE L1 5749 6141 -25 26 0 0 0 chr4 149209744 149209770 -53118577 + AT_rich Low_complexity Low_complexity 1 26 0 326 310 35 35 chr4 149209937 149210111 -53118236 + L1M4 LINE L1 4995 5168 -978 502 28 42 0 chr4 149210124 149210195 -53118152 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 370 316 63 13 chr4 149210242 149210400 -53117947 + L2 LINE L2 2873 3038 -234 2077 267 122 43 chr4 149211752 149212328 -53116019 - L2 LINE L2 -1 3312 2783 2277 105 3 0 chr4 149212328 149212623 -53115724 + AluSx SINE Alu 1 296 -16 285 29 0 0 chr4 149212633 149212667 -53115680 + (TG)n Simple_repeat Simple_repeat 1 34 0 2077 267 122 43 chr4 149212667 149213281 -53115066 - L2 LINE L2 -538 2775 2013 395 322 123 7 chr4 149213610 149213791 -53114556 + MIR SINE MIR 3 201 -61 986 259 109 8 chr4 149214383 149214777 -53113570 - L1M4 LINE L1 -1202 4944 4511 2249 157 183 33 chr4 149214804 149215313 -53113034 - LTR18B LTR ERVL -27 587 3 1336 157 52 20 chr4 149215385 149215634 -53112713 - AluJb SINE Alu -10 302 46 528 275 85 23 chr4 149215641 149215946 -53112401 - L1M4 LINE L1 -1700 4446 4123 4046 91 15 4 chr4 149215946 149216494 -53111853 + HSMAR1 DNA Mariner 2 555 -732 3151 102 25 2 chr4 149216474 149216906 -53111441 + HSMAR1 DNA Mariner 843 1284 -3 * 245 253 80 0 chr4 149216907 149216982 -53111365 - L1M4 LINE L1 -2025 4121 4041 10786 208 59 14 chr4 149217097 149217130 -53111217 - L1PBb LINE L1 -1706 4497 4467 228 35 0 0 chr4 149217130 149217159 -53111188 + (TG)n Simple_repeat Simple_repeat 2 30 0 10786 208 59 14 chr4 149217159 149219387 -53108960 - L1PBb LINE L1 -1736 4467 2341 2241 135 0 0 chr4 149219387 149219698 -53108649 - AluSx SINE Alu -1 311 1 10786 208 59 14 chr4 149219698 149220657 -53107690 - L1PBb LINE L1 -3862 2341 1427 2279 45 11 0 chr4 149220657 149220922 -53107425 - AluY SINE Alu -13 298 31 10786 208 59 14 chr4 149220922 149221535 -53106812 - L1PBb LINE L1 -4776 1427 385 5677 129 40 2 chr4 149221558 149222631 -53105716 - L1PB2 LINE L1 0 6151 5041 1774 91 4 31 chr4 149222637 149222891 -53105456 - AluSc SINE Alu -62 247 1 11184 248 64 47 chr4 149222891 149226391 -53101956 - HERVI LTR ERV1 -30 6619 3140 465 214 71 29 chr4 149226809 149226949 -53101398 - HERVI LTR ERV1 -6602 1183 1038 * 2742 202 47 88 chr4 149226942 149227788 -53100559 - HERVI LTR ERV1 -5832 817 6 1459 208 148 51 chr4 149227840 149228326 -53100021 - LTR10B LTR ERV1 -3 544 12 367 216 14 0 chr4 149228347 149228421 -53099926 - L1PBb LINE L1 -6104 100 26 * 8656 172 22 20 chr4 149228418 149229845 -53098502 - L1PBa LINE L1 -5245 1618 185 2626 114 19 5 chr4 149229845 149230213 -53098134 - THE1C LTR MaLR 0 375 3 8656 172 22 20 chr4 149230213 149230399 -53097948 - L1PBa LINE L1 -6678 185 1 340 261 8 60 chr4 149230619 149230753 -53097594 - L1M2 LINE L1 -5782 1067 941 249 222 12 12 chr4 149230838 149230919 -53097428 - L1MDa LINE L1 -5173 1768 1688 230 287 0 37 chr4 149230939 149231047 -53097300 - L1MDa LINE L1 -4950 1473 1370 2333 65 0 0 chr4 149231265 149231564 -53096783 - AluSc SINE Alu 0 299 1 296 380 0 0 chr4 149232202 149232344 -53096003 - MER117 DNA MER1_type 0 197 56 2805 154 43 52 chr4 149232555 149233134 -53095213 + MER4B LTR ERV1 1 574 -36 510 304 70 51 chr4 149233320 149233734 -53094613 - MER115 DNA AcHobo -270 423 2 1905 124 60 0 chr4 149234346 149234629 -53093718 + AluSq SINE Alu 1 300 -13 506 179 214 8 chr4 149234643 149234760 -53093587 + FLAM_C SINE Alu 1 141 -2 192 125 0 0 chr4 149234875 149234907 -53093440 + (TC)n Simple_repeat Simple_repeat 1 32 0 2143 119 0 31 chr4 149235049 149235368 -53092979 + AluSc SINE Alu 1 309 0 666 292 76 55 chr4 149236606 149237153 -53091194 + L1MC4a LINE L1 5328 5721 -570 2478 67 7 3 chr4 149237233 149237532 -53090815 + AluY SINE Alu 1 300 -11 450 0 0 0 chr4 149237535 149237585 -53090762 + (CA)n Simple_repeat Simple_repeat 1 50 0 421 141 24 24 chr4 149239390 149239475 -53088872 - L1PA13 LINE L1 -396 5767 5683 * 3087 74 5 0 chr4 149239444 149239848 -53088499 + L1PA13 LINE L1 5758 6163 0 2511 87 0 0 chr4 149240327 149240638 -53087709 + AluY SINE Alu 1 311 0 2164 134 0 0 chr4 149240652 149240951 -53087396 + AluSx SINE Alu 1 299 -13 410 317 79 91 chr4 149240970 149241718 -53086629 - L2 LINE L2 -841 2473 1735 424 345 43 43 chr4 149241822 149242190 -53086157 - L2 LINE L2 -1809 1505 1138 451 269 64 0 chr4 149242638 149242779 -53085568 + MLT1H1 LTR MaLR 1 150 -405 1353 266 83 16 chr4 149242802 149243486 -53084861 + L2 LINE L2 2587 3313 0 2062 116 11 0 chr4 149244735 149245019 -53083328 + AluSq SINE Alu 1 287 -26 206 0 0 65 chr4 149245022 149245053 -53083294 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5024 114 28 1 chr4 149245799 149246516 -53081831 - L1PA14 LINE L1 0 6161 5426 331 143 0 0 chr4 149246516 149246572 -53081775 + L1P LINE L1 5358 5413 -748 21 0 0 0 chr4 149248101 149248122 -53080225 + AT_rich Low_complexity Low_complexity 1 21 0 1774 147 58 7 chr4 149249086 149249379 -53078968 - AluJb SINE Alu -4 308 1 639 153 38 143 chr4 149250495 149250704 -53077643 + MER53 DNA DNA 1 187 -2 2217 109 0 0 chr4 149250792 149251077 -53077270 + AluSq SINE Alu 12 296 -17 637 234 80 29 chr4 149251678 149251917 -53076430 + L1ME4a LINE L1 5777 6027 -94 330 44 22 0 chr4 149252154 149252199 -53076148 + MADE1 DNA Mariner 1 46 -34 253 308 138 0 chr4 149252230 149252360 -53075987 - MIR SINE MIR -38 224 77 1760 196 46 3 chr4 149252755 149253082 -53075265 - MER58B DNA MER1_type 0 341 1 549 177 109 104 chr4 149254517 149254737 -53073610 + MIR SINE MIR 16 236 -26 595 276 45 15 chr4 149255064 149255263 -53073084 - L3 LINE CR1 -4 1573 1369 247 211 84 63 chr4 149255335 149255430 -53072917 + Charlie4 DNA MER1_type 1860 1956 -5 450 274 147 87 chr4 149255442 149255861 -53072486 - L3 LINE CR1 -251 1326 871 858 281 61 4 chr4 149255861 149256107 -53072240 - MIR SINE MIR 0 262 3 450 274 147 87 chr4 149256107 149256183 -53072164 - L3 LINE CR1 -706 871 801 1306 232 56 28 chr4 149256332 149256690 -53071657 + MER87 LTR ERV1 174 541 0 186 259 153 12 chr4 149256858 149256943 -53071404 - MIR SINE MIR 0 262 166 277 357 133 32 chr4 149256950 149257237 -53071110 - L3 LINE CR1 -925 652 395 1967 83 4 0 chr4 149257237 149257489 -53070858 - AluY SINE Alu -15 296 44 277 357 133 32 chr4 149257489 149257599 -53070748 - L3 LINE CR1 -1182 395 297 2161 133 0 0 chr4 149257599 149257908 -53070439 - AluSx SINE Alu -3 309 1 277 357 133 32 chr4 149257908 149258044 -53070303 - L3 LINE CR1 -1280 297 64 245 337 12 0 chr4 149258487 149258570 -53069777 + MIR SINE MIR 2 85 -177 250 226 16 16 chr4 149258628 149258690 -53069657 + MIR SINE MIR 96 157 -105 251 281 16 0 chr4 149258810 149258874 -53069473 + MIR SINE MIR 198 262 0 28 48 0 0 chr4 149259610 149259652 -53068695 + AT_rich Low_complexity Low_complexity 1 42 0 356 335 45 38 chr4 149260024 149260314 -53068033 - L1MEc LINE L1 -6019 377 86 226 299 47 39 chr4 149260419 149260546 -53067801 - L1MC/D LINE L1 -1937 5871 5744 208 422 52 7 chr4 149261668 149261822 -53066525 - MIR3 SINE MIR -13 195 35 1032 169 13 43 chr4 149262345 149262576 -53065771 + AluJb SINE Alu 89 312 0 1454 155 43 36 chr4 149263473 149263750 -53064597 - AluJo SINE Alu -30 282 4 906 117 8 0 chr4 149264132 149264260 -53064087 + AluSg SINE Alu 1 129 -181 586 277 66 71 chr4 149264519 149264898 -53063449 + L1ME4a LINE L1 5492 5868 -253 924 206 73 108 chr4 149266025 149266123 -53062224 + MLT1A1 LTR MaLR 3 103 -262 3207 112 20 16 chr4 149266123 149266177 -53062170 + MER83 LTR ERV1 1 53 -395 201 39 0 0 chr4 149266177 149266203 -53062144 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 3207 112 20 16 chr4 149266203 149266594 -53061753 + MER83 LTR ERV1 53 448 0 924 206 73 108 chr4 149266594 149266864 -53061483 + MLT1A1 LTR MaLR 103 358 -7 1818 167 77 3 chr4 149267990 149268313 -53060034 - MER7A DNA MER2_type 0 346 2 23 0 0 0 chr4 149268355 149268378 -53059969 + AT_rich Low_complexity Low_complexity 1 23 0 1976 107 11 7 chr4 149268378 149268649 -53059698 + AluSx SINE Alu 26 297 -15 2447 228 100 66 chr4 149269368 149270268 -53058079 + L1MC4 LINE L1 6918 7863 -179 2382 117 30 10 chr4 149270268 149270661 -53057686 + L1MA4A LINE L1 5903 6303 0 2447 228 100 66 chr4 149270661 149270847 -53057500 + L1MC4 LINE L1 7863 8041 -1 232 64 0 21 chr4 149271860 149271907 -53056440 + LTR66 LTR ERVL 394 439 -171 1678 176 3 23 chr4 149272329 149272635 -53055712 + AluJb SINE Alu 1 300 -12 261 309 100 9 chr4 149272778 149272888 -53055459 + MIR SINE MIR 26 145 -63 1573 174 3 14 chr4 149272909 149273191 -53055156 + AluJo SINE Alu 1 279 -33 26 30 0 0 chr4 149273373 149273406 -53054941 + AT_rich Low_complexity Low_complexity 1 33 0 192 250 0 0 chr4 149274865 149274905 -53053442 - L2 LINE L2 -253 3060 3021 2407 76 0 7 chr4 149274905 149275208 -53053139 - AluY SINE Alu -10 301 1 180 284 40 27 chr4 149275479 149275553 -53052794 - MIR SINE MIR -129 133 59 1232 173 53 0 chr4 149275572 149275780 -53052567 + MER20 DNA MER1_type 1 219 0 21 0 0 0 chr4 149275842 149275863 -53052484 + AT_rich Low_complexity Low_complexity 1 21 0 5884 141 37 39 chr4 149276825 149278215 -53050132 + L1MA9 LINE L1 4915 6304 -8 190 381 33 22 chr4 149278547 149278728 -53049619 + L2 LINE L2 1755 1937 -1377 363 282 87 27 chr4 149278747 149278896 -53049451 + L2 LINE L2 2267 2424 -890 234 146 164 18 chr4 149278982 149279037 -53049310 + MIR SINE MIR 58 120 -142 280 244 52 70 chr4 149279063 149279178 -53049169 + L2 LINE L2 2949 3061 -252 21 36 0 0 chr4 149280538 149280566 -53047781 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 149281478 149281506 -53046841 + AT_rich Low_complexity Low_complexity 1 28 0 301 143 20 0 chr4 149281515 149281564 -53046783 - MER66A LTR ERV1 -142 336 287 190 279 29 57 chr4 149281610 149281750 -53046597 + L2 LINE L2 2828 2963 -309 244 180 40 0 chr4 149283105 149283155 -53045192 + (TGAA)n Simple_repeat Simple_repeat 4 55 0 180 0 0 0 chr4 149283394 149283414 -53044933 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2089 91 40 7 chr4 149283416 149283690 -53044657 - AluSp SINE Alu -30 283 1 252 184 82 31 chr4 149284103 149284201 -53044146 + L1ME3A LINE L1 5328 5430 -691 881 163 0 15 chr4 149284632 149284767 -53043580 + FLAM_C SINE Alu 1 133 0 229 245 0 0 chr4 149285653 149285702 -53042645 + MIR SINE MIR 104 152 -56 255 74 41 148 chr4 149286201 149286446 -53041901 + AluSg SINE Alu 1 300 0 1181 178 53 32 chr4 149287911 149288247 -53040100 - MER4C LTR ERV1 0 465 152 640 197 7 21 chr4 149288358 149288500 -53039847 - MER4C LTR ERV1 -325 140 1 1455 245 82 85 chr4 149288517 149289129 -53039218 + L1ME3A LINE L1 5476 6085 -85 344 297 167 41 chr4 149293278 149293949 -53034398 + L2 LINE L2 2546 3304 -9 * 599 323 5 25 chr4 149293923 149294124 -53034223 - MIR SINE MIR -49 213 17 527 124 0 106 chr4 149294201 149294314 -53034033 + MER53 DNA DNA 1 101 -88 297 292 108 17 chr4 149295010 149295130 -53033217 - MIR SINE MIR -70 192 62 282 336 33 8 chr4 149295222 149295344 -53033003 + MIR SINE MIR 20 144 -118 2035 170 0 0 chr4 149296320 149296631 -53031716 - AluJb SINE Alu -1 311 1 261 228 38 25 chr4 149298234 149298313 -53030034 + Charlie8 DNA MER1_type 94 173 -2244 2255 110 0 7 chr4 149298471 149298780 -53029567 - AluSq SINE Alu -6 307 1 207 314 49 0 chr4 149298948 149299050 -53029297 + MIR SINE MIR 118 224 -38 1793 159 21 0 chr4 149299132 149299421 -53028926 + AluJb SINE Alu 1 295 -17 446 256 56 44 chr4 149299612 149299792 -53028555 + L1MC5 LINE L1 7706 7887 -74 197 298 0 0 chr4 149299830 149299877 -53028470 + L2 LINE L2 3201 3247 -25 2015 154 0 7 chr4 149299902 149300207 -53028140 + AluSx SINE Alu 1 303 -9 230 250 71 12 chr4 149300547 149300631 -53027716 + MIR SINE MIR 54 142 -120 470 253 16 89 chr4 149301369 149301559 -53026788 - MER5B DNA MER1_type 0 178 3 2044 64 38 4 chr4 149301991 149302258 -53026089 - LTR10D LTR ERV1 0 513 238 3048 186 127 52 chr4 149302377 149302770 -53025577 + L1MB8 LINE L1 4586 4948 -1230 2278 119 0 0 chr4 149302770 149303072 -53025275 + AluSg SINE Alu 1 302 -8 3048 186 127 52 chr4 149303072 149303627 -53024720 + L1MB8 LINE L1 4948 5460 -718 1795 160 10 33 chr4 149303627 149303927 -53024420 - AluJb SINE Alu -19 293 1 3048 186 127 52 chr4 149303927 149304279 -53024068 + L1MB8 LINE L1 5460 5784 -394 2501 53 0 10 chr4 149304279 149304581 -53023766 - AluY SINE Alu -12 299 1 3048 186 127 52 chr4 149304581 149304753 -53023594 + L1MB8 LINE L1 5784 6178 0 730 199 7 7 chr4 149305561 149305702 -53022645 + FLAM_C SINE Alu 2 142 -1 233 286 0 0 chr4 149308433 149308496 -53019851 + MIR3 SINE MIR 123 185 -23 993 154 50 59 chr4 149309103 149309324 -53019023 + MER20 DNA MER1_type 1 219 0 378 0 0 0 chr4 149309618 149309660 -53018687 + (TG)n Simple_repeat Simple_repeat 1 42 0 272 153 71 10 chr4 149310128 149310226 -53018121 + (TA)n Simple_repeat Simple_repeat 2 105 0 1960 138 3 26 chr4 149310822 149311127 -53017220 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr4 149311267 149311288 -53017059 + AT_rich Low_complexity Low_complexity 1 21 0 538 267 0 8 chr4 149312485 149312605 -53015742 + FLAM_A SINE Alu 8 126 -16 1870 158 0 38 chr4 149312635 149312952 -53015395 - AluJo SINE Alu -7 305 1 494 246 110 40 chr4 149312956 149313228 -53015119 + L1ME4a LINE L1 5830 6120 -1 292 296 70 9 chr4 149313560 149313675 -53014672 - MER5A DNA MER1_type -1 188 67 2297 177 102 14 chr4 149313811 149314313 -53014034 + MER74A LTR ERVL 6 551 -7 2296 109 7 0 chr4 149314314 149314618 -53013729 + AluSx SINE Alu 1 306 -6 676 162 30 17 chr4 149315757 149315997 -53012350 + CT-rich Low_complexity Low_complexity 1 243 0 1272 187 112 15 chr4 149316006 149316274 -53012073 - AluJo SINE Alu -18 294 1 2009 141 3 28 chr4 149318990 149319310 -53009037 + AluJb SINE Alu 1 312 0 848 145 0 22 chr4 149319372 149319510 -53008837 - FLAM_C SINE Alu -2 141 7 527 276 24 12 chr4 149319673 149319843 -53008504 + MIR SINE MIR 47 218 -44 495 293 59 72 chr4 149320322 149320541 -53007806 + L1ME4a LINE L1 5599 5819 -302 2130 148 0 0 chr4 149320541 149320851 -53007496 + AluSx SINE Alu 1 310 -2 495 293 59 72 chr4 149320851 149321143 -53007204 + L1ME4a LINE L1 5819 6103 -18 194 214 34 135 chr4 149321444 149321533 -53006814 + MIR SINE MIR 34 113 -95 2365 88 7 0 chr4 149322428 149322734 -53005613 + AluSx SINE Alu 1 308 -4 1785 175 0 16 chr4 149323347 149323650 -53004697 + AluJb SINE Alu 1 298 -14 2025 97 41 0 chr4 149324721 149324990 -53003357 + AluSg SINE Alu 1 280 -30 237 321 125 36 chr4 149325195 149325307 -53003040 + L2 LINE L2 3107 3228 -44 4043 179 50 11 chr4 149325340 149326161 -53002186 + L1MC3 LINE L1 6896 7748 -37 718 208 0 0 chr4 149326267 149326397 -53001950 + FLAM_C SINE Alu 1 130 -3 23 0 0 0 chr4 149326397 149326420 -53001927 + AT_rich Low_complexity Low_complexity 1 23 0 2460 90 0 0 chr4 149326422 149326722 -53001625 + AluSx SINE Alu 3 302 -10 2130 125 3 3 chr4 149326791 149327087 -53001260 + AluSx SINE Alu 2 297 -15 731 75 47 0 chr4 149327089 149327195 -53001152 - HY1 scRNA scRNA -1 111 1 439 210 98 71 chr4 149327323 149327652 -53000695 + MLT1J2 LTR MaLR 54 449 -1 253 369 10 0 chr4 149329697 149329800 -52998547 + MIR SINE MIR 40 143 -65 2007 152 0 9 chr4 149330367 149330682 -52997665 + AluSx SINE Alu 1 312 0 189 147 0 0 chr4 149330687 149330721 -52997626 + (A)n Simple_repeat Simple_repeat 1 34 0 282 182 0 18 chr4 149331028 149331083 -52997264 - MLT1C LTR MaLR -413 54 1 298 272 53 75 chr4 149331603 149331890 -52996457 + L1MC4a LINE L1 5678 5964 -157 236 167 13 51 chr4 149331862 149331940 -52996407 + L1MCa LINE L1 1994 2068 -4358 * 595 303 107 0 chr4 149332155 149332389 -52995958 + MIR SINE MIR 2 260 -2 476 141 0 10 chr4 149332882 149332981 -52995366 + (TTCC)n Simple_repeat Simple_repeat 1 98 0 2137 120 7 7 chr4 149332981 149333280 -52995067 - AluSg SINE Alu -11 299 1 2360 98 0 0 chr4 149333337 149333643 -52994704 - AluSx SINE Alu -6 306 1 2316 99 20 0 chr4 149334024 149334328 -52994019 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr4 149334484 149334505 -52993842 + AT_rich Low_complexity Low_complexity 1 21 0 309 182 13 78 chr4 149334659 149334736 -52993611 - MLT2B3 LTR ERVL 0 554 483 * 1131 183 22 112 chr4 149334733 149335045 -52993302 - MLT2B3 LTR ERVL -270 284 1 542 147 0 10 chr4 149335346 149335448 -52992899 + (TCCC)n Simple_repeat Simple_repeat 1 101 0 1807 167 4 11 chr4 149335448 149335729 -52992618 - AluJo SINE Alu -33 279 1 308 296 23 11 chr4 149336189 149336277 -52992070 - MIR SINE MIR -60 148 60 242 214 24 60 chr4 149336409 149336493 -52991854 - MLT1K LTR MaLR -380 208 128 1859 154 3 45 chr4 149336835 149337146 -52991201 + AluJo SINE Alu 1 298 -14 1009 198 60 103 chr4 149337656 149338025 -52990322 + MER51C LTR ERV1 288 640 0 968 199 6 0 chr4 149338215 149338391 -52989956 + AluJo SINE Alu 84 260 -52 2153 129 0 0 chr4 149338560 149338854 -52989493 - AluSx SINE Alu -18 294 1 2364 107 0 0 chr4 149339224 149339522 -52988825 + AluSx SINE Alu 1 298 -14 257 0 30 0 chr4 149340396 149340429 -52987918 + (TG)n Simple_repeat Simple_repeat 2 35 0 269 171 26 13 chr4 149340487 149340563 -52987784 - L1ME4a LINE L1 0 6121 6045 1134 202 14 10 chr4 149340640 149340848 -52987499 + AluJo SINE Alu 87 295 -17 484 207 0 0 chr4 149341049 149341131 -52987216 - AluJ/FLAM SINE Alu -229 83 2 491 239 107 19 chr4 149341131 149341290 -52987057 - L1ME LINE L1 -451 5670 5498 250 185 139 19 chr4 149341415 149341523 -52986824 - L1ME4a LINE L1 0 6121 6001 2318 86 0 3 chr4 149342117 149342407 -52985940 - AluSp SINE Alu -24 289 1 820 193 0 15 chr4 149342784 149342919 -52985428 + FLAM_A SINE Alu 1 133 0 256 200 0 50 chr4 149343103 149343131 -52985216 + (TATG)n Simple_repeat Simple_repeat 2 30 -28 969 204 55 154 chr4 149343131 149343513 -52984834 + MER2 DNA MER2_type 1 344 0 256 200 0 50 chr4 149343513 149343544 -52984803 + (TATG)n Simple_repeat Simple_repeat 30 58 0 693 270 87 42 chr4 149343564 149343805 -52984542 - MIR SINE MIR -4 258 7 1884 140 41 3 chr4 149343986 149344278 -52984069 - AluJo SINE Alu -9 303 1 1175 169 45 58 chr4 149344282 149344600 -52983747 - L1MA9 LINE L1 -10 6324 6027 441 232 242 26 chr4 149344881 149345071 -52983276 - MLT1D LTR MaLR 0 505 275 1035 148 0 34 chr4 149345089 149345265 -52983082 - FRAM SINE Alu -7 169 1 1052 205 14 69 chr4 149345265 149345553 -52982794 - MLT1D LTR MaLR -233 272 1 213 271 0 43 chr4 149345604 149345674 -52982673 - MIR SINE MIR 0 262 196 2251 128 0 0 chr4 149345725 149346037 -52982310 - AluSx SINE Alu 0 312 1 1757 177 3 10 chr4 149346041 149346335 -52982012 - AluJo SINE Alu -20 292 1 2075 118 0 3 chr4 149346928 149347216 -52981131 - AluSg SINE Alu -10 300 14 2232 99 3 3 chr4 149347277 149347570 -52980777 - AluSx SINE Alu -15 297 5 596 231 209 0 chr4 149347596 149347778 -52980569 - MIR SINE MIR -1 261 42 338 293 52 9 chr4 149347937 149348053 -52980294 + L2 LINE L2 3176 3296 -17 481 323 46 95 chr4 149348124 149348478 -52979869 - L2 LINE L2 0 3272 2964 739 163 23 39 chr4 149348478 149348607 -52979740 + FLAM_C SINE Alu 1 127 -6 481 323 46 95 chr4 149348607 149348979 -52979368 - L2 LINE L2 -308 2964 2575 283 329 29 36 chr4 149349285 149349422 -52978925 - MER5A DNA MER1_type -20 169 34 364 342 0 8 chr4 149349288 149349408 -52978939 + MER5B DNA MER1_type 24 142 -36 502 333 30 30 chr4 149350673 149350904 -52977443 - MIR SINE MIR -4 258 28 2447 146 52 69 chr4 149350915 149350942 -52977405 - L1MB3 LINE L1 -1 6182 6156 1806 151 192 0 chr4 149350942 149351280 -52977067 + MER57A LTR ERV1 1 403 0 2447 146 52 69 chr4 149351280 149351302 -52977045 - L1MB3 LINE L1 -27 6156 6135 2327 80 0 19 chr4 149351302 149351613 -52976734 - AluY SINE Alu -6 305 1 2447 146 52 69 chr4 149351613 149352058 -52976289 - L1MB3 LINE L1 -48 6135 5694 1914 150 0 3 chr4 149352058 149352351 -52975996 + AluSx SINE Alu 4 295 -17 2447 146 52 69 chr4 149352351 149352389 -52975958 - L1MB3 LINE L1 -489 5694 5657 406 192 0 0 chr4 149352777 149352850 -52975497 - AluJ/FRAM SINE Alu -12 300 228 1045 203 16 5 chr4 149353165 149353352 -52974995 - MER5A DNA MER1_type 0 189 1 232 132 26 0 chr4 149353355 149353393 -52974954 - Alu SINE Alu -210 92 54 310 309 99 26 chr4 149353613 149353804 -52974543 - L2 LINE L2 -3 3310 3106 21 0 0 0 chr4 149353934 149353955 -52974392 + AT_rich Low_complexity Low_complexity 1 21 0 1987 156 3 0 chr4 149354065 149354367 -52973980 - AluSx SINE Alu -4 308 6 420 222 56 78 chr4 149355136 149355316 -52973031 + L1MC4a LINE L1 5573 5748 -2060 2036 148 0 0 chr4 149355318 149355609 -52972738 + AluSx SINE Alu 1 291 -21 293 280 16 43 chr4 149355634 149355820 -52972527 + L1MC4a LINE L1 5731 5911 -1897 1042 144 0 0 chr4 149355961 149356114 -52972233 - AluJb SINE Alu -28 284 132 1556 155 85 115 chr4 149356141 149356542 -52971805 - MLT1B LTR MaLR 0 390 2 213 180 0 0 chr4 149357636 149357686 -52970661 + CT-rich Low_complexity Low_complexity 2 51 0 247 322 0 11 chr4 149357688 149357775 -52970572 + L2 LINE L2 3179 3264 -8 186 43 0 0 chr4 149358058 149358081 -52970266 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 293 276 152 9 chr4 149358087 149358192 -52970155 - L2 LINE L2 -30 3242 3123 358 197 0 0 chr4 149358563 149358624 -52969723 + AluJ/FRAM SINE Alu 229 289 -13 25 31 0 0 chr4 149359709 149359741 -52968606 + AT_rich Low_complexity Low_complexity 1 32 0 24 53 0 0 chr4 149360411 149360449 -52967898 + AT_rich Low_complexity Low_complexity 1 38 0 542 160 110 10 chr4 149360449 149360549 -52967798 - HY1 scRNA scRNA -2 110 1 1791 144 38 24 chr4 149360597 149360889 -52967458 + AluJb SINE Alu 2 297 -15 390 214 50 49 chr4 149361204 149361924 -52966423 + (CATATA)n Simple_repeat Simple_repeat 1 721 0 269 214 34 96 chr4 149362033 149362211 -52966136 + (TATATG)n Simple_repeat Simple_repeat 2 168 0 228 131 12 60 chr4 149362214 149362298 -52966049 + (TA)n Simple_repeat Simple_repeat 2 81 0 209 336 129 0 chr4 149362701 149362817 -52965530 + L2 LINE L2 3141 3271 -1 315 71 0 0 chr4 149362827 149362869 -52965478 + (TG)n Simple_repeat Simple_repeat 2 43 0 246 206 147 0 chr4 149363683 149363751 -52964596 + MIR SINE MIR 95 172 -90 781 301 130 22 chr4 149364085 149364586 -52963761 - L1ME3 LINE L1 -268 5894 5340 270 0 0 0 chr4 149366543 149366573 -52961774 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 369 0 0 0 chr4 149366572 149366613 -52961734 + (CA)n Simple_repeat Simple_repeat 1 41 0 654 195 177 8 chr4 149366684 149366969 -52961378 - MER5C DNA MER1_type -1 323 31 2147 132 20 54 chr4 149366975 149367324 -52961023 - MER1B DNA MER1_type 0 337 1 878 231 53 0 chr4 149368127 149368296 -52960051 - MER45A DNA AcHobo 0 178 1 335 218 154 67 chr4 149368975 149369306 -52959041 + L1ME4a LINE L1 5762 6121 0 2180 91 0 7 chr4 149369785 149370072 -52958275 + AluSg SINE Alu 2 286 -24 357 24 0 0 chr4 149370072 149370114 -52958233 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 268 186 0 0 chr4 149370114 149370157 -52958190 - Alu SINE Alu -25 277 235 2178 41 8 11 chr4 149370157 149370423 -52957924 - PABL_A LTR ERV1 0 660 396 827 145 0 15 chr4 149370423 149370554 -52957793 - AluJo SINE Alu -173 139 11 21 36 0 0 chr4 149370759 149370787 -52957560 + AT_rich Low_complexity Low_complexity 1 28 0 319 159 111 0 chr4 149370787 149370850 -52957497 + AluJ/FLAM SINE Alu 1 70 -232 924 117 0 0 chr4 149370952 149371097 -52957250 + (TC)n Simple_repeat Simple_repeat 1 145 0 859 182 24 18 chr4 149371112 149371282 -52957065 - MLT2D LTR ERVL -243 171 1 1871 161 27 76 chr4 149371998 149372408 -52955939 - MLT1B LTR MaLR 0 390 1 511 283 79 0 chr4 149372408 149372560 -52955787 + MIR SINE MIR 85 248 -14 21 71 0 0 chr4 149372594 149372636 -52955711 + AT_rich Low_complexity Low_complexity 1 42 0 1638 134 108 10 chr4 149372646 149372953 -52955394 + L1MA8 LINE L1 5803 6139 -152 822 144 8 0 chr4 149372963 149373081 -52955266 - AluJb SINE Alu -192 120 2 937 99 50 19 chr4 149373083 149373244 -52955103 + L1MA8 LINE L1 6126 6291 0 484 288 58 31 chr4 149373299 149373490 -52954857 + MIR SINE MIR 13 208 -54 643 255 159 63 chr4 149373561 149373976 -52954371 - MLT1J LTR MaLR -56 455 1 21 0 0 0 chr4 149374223 149374244 -52954103 + AT_rich Low_complexity Low_complexity 1 21 0 2469 93 6 0 chr4 149374602 149374913 -52953434 - AluSp SINE Alu 0 313 1 2444 93 0 0 chr4 149375322 149375624 -52952723 - AluSc SINE Alu -7 302 1 28 0 0 0 chr4 149375794 149375822 -52952525 + AT_rich Low_complexity Low_complexity 1 28 0 1336 207 45 14 chr4 149376250 149376540 -52951807 + AluJb SINE Alu 1 299 -13 1725 156 6 52 chr4 149377779 149378106 -52950241 - AluJb SINE Alu 0 312 1 189 0 0 0 chr4 149378436 149378457 -52949890 + (T)n Simple_repeat Simple_repeat 1 21 0 198 0 0 0 chr4 149379027 149379049 -52949298 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 268 261 139 26 chr4 149379275 149379390 -52948957 - MIR SINE MIR -65 143 16 207 0 0 0 chr4 149380254 149380277 -52948070 + (T)n Simple_repeat Simple_repeat 1 23 0 43391 52 7 2 chr4 149380308 149386432 -52941915 - L1PA5 LINE L1 0 6154 4 1140 78 0 0 chr4 149386435 149386576 -52941771 - AluY SINE Alu -16 295 155 203 200 0 0 chr4 149387259 149387294 -52941053 - L2 LINE L2 -18 3254 3220 306 285 140 53 chr4 149387294 149387487 -52940860 - MIR SINE MIR -12 250 3 455 245 110 63 chr4 149387990 149388067 -52940280 - MLT1K LTR MaLR -158 430 358 1890 152 33 107 chr4 149388067 149388488 -52939859 - MLT1B LTR MaLR 0 390 1 455 245 110 63 chr4 149388488 149388647 -52939700 - MLT1K LTR MaLR -230 358 183 284 0 28 0 chr4 149388673 149388709 -52939638 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1241 264 91 12 chr4 149389033 149389450 -52938897 - MLT1J2 LTR MaLR 0 450 1 439 304 99 61 chr4 149389538 149389831 -52938516 - L2 LINE L2 -107 3165 2862 744 12 0 0 chr4 149390327 149390412 -52937935 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 2060 185 45 45 chr4 149390778 149391270 -52937077 - L1MD3 LINE L1 0 7995 7504 2802 163 30 20 chr4 149391675 149392183 -52936164 + MLT2B1 LTR ERVL 1 513 -7 3092 109 12 5 chr4 149392202 149392633 -52935714 + MER57B LTR ERV1 1 434 0 1230 250 174 20 chr4 149393210 149393524 -52934823 - MLT1F1 LTR MaLR -7 560 296 216 0 0 0 chr4 149393524 149393548 -52934799 + (GA)n Simple_repeat Simple_repeat 1 24 0 1230 250 174 20 chr4 149393548 149393731 -52934616 - MLT1F1 LTR MaLR -271 296 2 333 271 159 0 chr4 149394054 149394161 -52934186 - L2 LINE L2 0 3313 3190 593 326 44 22 chr4 149394311 149394627 -52933720 + L2 LINE L2 2991 3313 0 212 136 0 106 chr4 149395613 149395679 -52932668 + (TTTTC)n Simple_repeat Simple_repeat 4 62 0 295 309 40 20 chr4 149395950 149396102 -52932245 - L1ME4a LINE L1 -1 6120 5966 451 175 38 0 chr4 149396335 149396415 -52931932 - MER58B DNA MER1_type -1 340 258 2104 164 139 8 chr4 149396417 149396784 -52931563 - MER47B DNA MER2_type -3 415 1 431 207 0 0 chr4 149397183 149397265 -52931082 - AluY SINE Alu -11 300 219 987 201 6 17 chr4 149397772 149397946 -52930401 + FAM SINE Alu 2 173 -2 43518 52 3 7 chr4 149398103 149404273 -52924074 - L1PA5 LINE L1 0 6154 11 1684 187 6 29 chr4 149404824 149405140 -52923207 + AluJb SINE Alu 1 309 -3 267 88 0 0 chr4 149405539 149405573 -52922774 - Alu SINE Alu -12 289 256 212 266 114 0 chr4 149405872 149405951 -52922396 + MIR SINE MIR 21 108 -154 211 330 44 11 chr4 149405956 149406047 -52922300 - MIR SINE MIR -1 261 168 292 297 7 19 chr4 149406091 149406257 -52922090 + MIR SINE MIR 6 247 -15 892 178 0 37 chr4 149407083 149407246 -52921101 - FRAM SINE Alu -9 157 1 2177 105 0 3 chr4 149407899 149408195 -52920152 + AluSg SINE Alu 1 295 -15 31 26 0 0 chr4 149408304 149408342 -52920005 + AT_rich Low_complexity Low_complexity 1 38 0 1987 157 7 94 chr4 149409716 149410068 -52918279 + MLT1B LTR MaLR 1 311 -79 1992 118 6 59 chr4 149410068 149410391 -52917956 - AluSg SINE Alu -4 306 1 1987 157 7 94 chr4 149410391 149410465 -52917882 + MLT1B LTR MaLR 311 390 0 697 235 113 123 chr4 149410551 149411048 -52917299 + MLT1H1 LTR MaLR 64 555 0 381 203 361 0 chr4 149411200 149411333 -52917014 + MLT1J LTR MaLR 320 500 -11 2402 88 7 0 chr4 149411540 149411837 -52916510 + AluSx SINE Alu 1 299 -13 588 177 18 9 chr4 149411855 149411968 -52916379 + MER67A LTR ERV1 430 543 0 469 284 42 68 chr4 149412947 149413093 -52915254 - MIR SINE MIR -29 233 92 2091 136 3 16 chr4 149413093 149413403 -52914944 - AluSx SINE Alu -6 306 1 469 284 42 68 chr4 149413403 149413446 -52914901 - MIR SINE MIR -170 92 49 * 594 331 72 7 chr4 149413442 149413747 -52914600 + L2 LINE L2 2805 3129 -184 1803 171 26 3 chr4 149413779 149414084 -52914263 - AluJo SINE Alu 0 312 1 2114 260 18 28 chr4 149414088 149414687 -52913660 + L2 LINE L2 2256 2848 -466 250 254 14 14 chr4 149414732 149414803 -52913544 + L2 LINE L2 3149 3219 -94 191 255 0 21 chr4 149414857 149414904 -52913443 - MIR SINE MIR -208 54 9 216 0 0 0 chr4 149414992 149415016 -52913331 + (T)n Simple_repeat Simple_repeat 1 24 0 196 287 0 85 chr4 149415577 149415671 -52912676 + MIR SINE MIR 60 145 -63 2140 160 14 30 chr4 149416520 149416888 -52911459 - THE1B LTR MaLR -2 362 1 833 144 0 0 chr4 149416910 149417028 -52911319 + FLAM_C SINE Alu 1 118 -25 247 0 79 0 chr4 149417029 149417067 -52911280 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1977 151 6 13 chr4 149417091 149417403 -52910944 + AluSx SINE Alu 1 310 -2 483 239 18 9 chr4 149417410 149417519 -52910828 + MIR SINE MIR 63 172 -90 28 0 0 0 chr4 149418242 149418270 -52910077 + AT_rich Low_complexity Low_complexity 1 28 0 962 271 156 15 chr4 149418282 149418865 -52909482 + L1MEc LINE L1 1086 1750 -4646 22 0 0 0 chr4 149419087 149419109 -52909238 + AT_rich Low_complexity Low_complexity 1 22 0 816 164 0 37 chr4 149419109 149419243 -52909104 + FLAM_C SINE Alu 1 129 -4 452 277 97 65 chr4 149419279 149419557 -52908790 + L1MEc LINE L1 2031 2317 -4079 801 181 0 29 chr4 149419568 149419706 -52908641 + AluJo SINE Alu 3 136 -176 494 239 107 17 chr4 149419715 149419949 -52908398 + L1MEc LINE L1 2269 2523 -3692 * 1519 291 40 26 chr4 149419919 149420133 -52908214 + L1MEc LINE L1 3832 4041 -2174 249 33 0 0 chr4 149420133 149420163 -52908184 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 1519 291 40 26 chr4 149420163 149420790 -52907557 + L1MEc LINE L1 4041 4685 -1530 378 217 0 60 chr4 149420851 149420934 -52907413 + Tigger5 DNA MER2_type 1 78 -2245 407 262 28 19 chr4 149420935 149421042 -52907305 - Tigger5 DNA MER2_type -4 2319 2212 263 189 208 0 chr4 149421013 149421066 -52907281 + Tigger5 DNA MER2_type 2260 2323 0 * 2131 265 60 43 chr4 149421078 149421165 -52907182 + L1MEc LINE L1 4741 4825 -1414 332 136 30 0 chr4 149421165 149421231 -52907116 + L1PA16 LINE L1 6095 6162 -4 2131 265 60 43 chr4 149421231 149422417 -52905930 + L1MEc LINE L1 4825 6031 -208 225 297 33 11 chr4 149423039 149423130 -52905217 + L2 LINE L2 2966 3058 -214 526 213 51 116 chr4 149423227 149423285 -52905062 + LTR33 LTR ERVL 67 127 -394 742 220 0 0 chr4 149423285 149423417 -52904930 - FLAM_A SINE Alu 0 133 2 526 213 51 116 chr4 149423417 149423574 -52904773 + LTR33 LTR ERVL 127 268 -253 2337 96 6 10 chr4 149424357 149424669 -52903678 + AluSx SINE Alu 1 311 -1 287 113 19 0 chr4 149426393 149426446 -52901901 + GA-rich Low_complexity Low_complexity 1 54 0 252 0 0 0 chr4 149427500 149427528 -52900819 + (A)n Simple_repeat Simple_repeat 1 28 0 2637 142 118 28 chr4 149428078 149428560 -52899787 + MER39 LTR ERV1 1 526 -181 343 208 35 8 chr4 149428560 149428687 -52899660 + AluJ/FLAM SINE Alu 1 60 -242 1177 97 28 11 chr4 149428703 149428879 -52899468 + MER39 LTR ERV1 529 707 0 470 295 6 32 chr4 149428885 149429041 -52899306 - AluSc SINE Alu -11 298 147 2088 124 6 13 chr4 149429585 149429899 -52898448 + AluSx SINE Alu 1 312 0 398 294 136 22 chr4 149430245 149430473 -52897874 + MIR SINE MIR 9 262 0 768 204 0 0 chr4 149430554 149430686 -52897661 + FLAM_A SINE Alu 1 132 -10 267 31 0 0 chr4 149430806 149430838 -52897509 + (CA)n Simple_repeat Simple_repeat 2 33 0 327 252 119 42 chr4 149431064 149431207 -52897140 + MER91A DNA MER1_type 29 182 -14 285 156 39 13 chr4 149433043 149433120 -52895227 + CT-rich Low_complexity Low_complexity 2 80 0 1681 171 27 7 chr4 149433281 149433573 -52894774 - AluJb SINE Alu -14 298 1 1543 181 20 33 chr4 149433653 149433957 -52894390 + AluJo SINE Alu 1 300 -12 299 261 116 7 chr4 149433989 149434127 -52894220 - MIR SINE MIR -54 208 56 1776 172 10 7 chr4 149434573 149434876 -52893471 + AluJo SINE Alu 1 304 -8 195 186 0 0 chr4 149435305 149435348 -52892999 + GA-rich Low_complexity Low_complexity 6 48 0 2172 137 3 0 chr4 149435404 149435710 -52892637 + AluSx SINE Alu 3 309 -3 1614 108 15 54 chr4 149436079 149436338 -52892009 - MER1B DNA MER1_type 0 339 131 283 77 19 19 chr4 149436557 149436609 -52891738 + (TC)n Simple_repeat Simple_repeat 2 53 0 216 67 0 0 chr4 149436609 149436639 -52891708 + (CA)n Simple_repeat Simple_repeat 1 30 0 1774 140 108 108 chr4 149437318 149437783 -52890564 + MER4C LTR ERV1 1 465 0 196 42 0 0 chr4 149438147 149438171 -52890176 + (TTTTG)n Simple_repeat Simple_repeat 2 100 0 1686 106 113 0 chr4 149438171 149438427 -52889920 - AluSp SINE Alu -1 308 1 398 275 114 24 chr4 149438574 149438741 -52889606 + MIR SINE MIR 49 230 -32 701 181 16 24 chr4 149438865 149438992 -52889355 + FLAM_A SINE Alu 1 126 -7 3394 151 49 6 chr4 149439285 149439939 -52888408 + LTR34 LTR ERV1 18 699 0 5379 124 14 50 chr4 149440076 149440578 -52887769 + MER4D LTR ERV1 1 455 -448 1845 166 3 3 chr4 149440578 149440880 -52887467 + AluJb SINE Alu 1 302 -10 5379 124 14 50 chr4 149440880 149441314 -52887033 + MER4D LTR ERV1 455 903 0 2460 95 0 0 chr4 149441396 149441700 -52886647 + AluSg SINE Alu 2 305 -5 246 136 0 0 chr4 149442022 149442066 -52886281 + (GGA)n Simple_repeat Simple_repeat 2 45 0 387 153 31 10 chr4 149442115 149442213 -52886134 + GA-rich Low_complexity Low_complexity 4 103 0 303 294 123 12 chr4 149442495 149442658 -52885689 - MIR SINE MIR -52 210 30 1280 98 10 16 chr4 149443420 149443614 -52884733 + MER4D LTR ERV1 1 193 -710 553 214 32 16 chr4 149443620 149443746 -52884601 + MER4E LTR ERV1 307 434 -345 2113 134 10 0 chr4 149443753 149444051 -52884296 + AluSx SINE Alu 9 309 -3 229 33 0 0 chr4 149444254 149444284 -52884063 + HSMAR1 DNA Mariner 2 31 -1256 4423 156 41 30 chr4 149444562 149445233 -52883114 - MER4D LTR ERV1 0 903 217 1625 181 22 11 chr4 149445233 149445537 -52882810 + AluJo SINE Alu 4 310 0 4423 156 41 30 chr4 149445537 149445743 -52882604 - MER4D LTR ERV1 -686 217 15 1617 196 3 13 chr4 149446590 149446891 -52881456 + AluJo SINE Alu 1 298 -14 183 114 0 0 chr4 149447310 149447345 -52881002 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 756 153 15 38 chr4 149449187 149449318 -52879029 + AluSx SINE Alu 6 133 -179 1174 119 24 0 chr4 149449333 149449548 -52878799 + AluSx SINE Alu 110 328 0 343 309 0 0 chr4 149449554 149449635 -52878712 + MIR SINE MIR 49 129 -133 196 323 52 0 chr4 149449782 149449878 -52878469 - MIR3 SINE MIR -17 191 91 626 317 31 9 chr4 149450268 149450495 -52877852 + MIR SINE MIR 18 249 -13 379 206 153 8 chr4 149450798 149450929 -52877418 - MIR SINE MIR -13 249 100 568 301 117 0 chr4 149451671 149451884 -52876463 - MIR SINE MIR 0 262 25 271 313 0 12 chr4 149452863 149452943 -52875404 - L2 LINE L2 0 3272 3194 2105 126 7 0 chr4 149453725 149454019 -52874328 - AluSx SINE Alu -16 296 1 23 33 0 0 chr4 149454118 149454148 -52874199 + AT_rich Low_complexity Low_complexity 1 30 0 1487 177 62 0 chr4 149454156 149454416 -52873931 - AluJo SINE Alu -24 288 13 483 177 115 77 chr4 149455067 149455276 -52873071 + L1MC/D LINE L1 5254 5470 -2338 1369 227 79 43 chr4 149455460 149456016 -52872331 + L1MC4a LINE L1 5254 5829 -1979 2486 173 9 9 chr4 149456058 149456515 -52871832 + LTR32 LTR ERVL 15 471 0 1907 136 0 67 chr4 149456765 149457081 -52871266 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr4 149457372 149457393 -52870954 + AT_rich Low_complexity Low_complexity 1 21 0 234 150 0 0 chr4 149458528 149458568 -52869779 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 25 65 0 0 chr4 149459150 149459196 -52869151 + AT_rich Low_complexity Low_complexity 1 46 0 1133 115 11 44 chr4 149459263 149459445 -52868902 - AluSg/x SINE Alu 0 312 137 2143 114 0 3 chr4 149459445 149459743 -52868604 - AluSx SINE Alu -15 297 1 226 300 92 8 chr4 149460744 149460874 -52867473 - L1P5 LINE L1 -688 5468 5328 765 227 79 110 chr4 149461175 149461492 -52866855 - MLT1D LTR MaLR -7 498 154 733 260 70 12 chr4 149461728 149461970 -52866377 - MIR SINE MIR -5 257 2 996 128 6 0 chr4 149463890 149463906 -52864441 + L1PA8 LINE L1 6005 6019 -153 871 125 0 29 chr4 149463906 149464042 -52864305 + FLAM_C SINE Alu 2 133 0 996 128 6 0 chr4 149464042 149464189 -52864158 + L1PA8 LINE L1 6019 6169 -3 204 259 35 0 chr4 149464194 149464252 -52864095 + GA-rich Low_complexity Low_complexity 2 61 0 1035 152 0 23 chr4 149464290 149464507 -52863840 - L1 LINE L1 -1566 4580 4369 572 163 0 0 chr4 149464509 149464607 -52863740 - AluJo/FRAM SINE Alu -5 307 210 638 112 0 65 chr4 149464608 149464715 -52863632 - AluJo/FLAM SINE Alu -209 103 4 230 163 23 0 chr4 149464893 149464936 -52863411 + MIR SINE MIR 157 200 -62 695 181 0 58 chr4 149465043 149465181 -52863166 - FLAM_C SINE Alu -12 131 2 468 291 75 47 chr4 149466001 149466321 -52862026 + MLT1I LTR MaLR 73 401 -8 427 275 77 24 chr4 149466345 149466552 -52861795 - L1M4 LINE L1 -3707 2439 2222 385 269 63 23 chr4 149466926 149467151 -52861196 + MLT1H LTR MaLR 57 288 -302 353 257 44 0 chr4 149467276 149467389 -52860958 + MLT1H LTR MaLR 437 554 -1 5314 218 33 22 chr4 149467503 149468926 -52859421 - L1MD1 LINE L1 -6 6219 4813 1925 139 10 39 chr4 149468926 149469236 -52859111 - AluSx SINE Alu -9 303 3 5314 218 33 22 chr4 149469236 149470226 -52858121 - L1MD1 LINE L1 -1412 4813 3774 1727 199 46 6 chr4 149470226 149470577 -52857770 - MLT1A1 LTR MaLR 0 365 1 5314 218 33 22 chr4 149470577 149470799 -52857548 - L1MD1 LINE L1 -2451 3774 3556 1274 206 8 8 chr4 149470801 149471044 -52857303 - AluJb SINE Alu -6 306 64 310 176 0 29 chr4 149471045 149471113 -52857234 - L1 LINE L1 -2934 3212 3147 387 212 99 57 chr4 149471149 149471338 -52857009 - L1 LINE L1 -2953 3193 2994 368 283 86 84 chr4 149471341 149472070 -52856277 - L1MD1 LINE L1 -4867 1252 522 1084 135 6 17 chr4 149472434 149472612 -52855735 - MLT1C LTR MaLR -46 421 246 536 324 54 73 chr4 149472881 149473470 -52854877 - L2 LINE L2 -2 3311 2736 408 55 0 0 chr4 149473480 149473535 -52854812 + (TG)n Simple_repeat Simple_repeat 2 56 0 664 194 24 8 chr4 149473665 149473789 -52854558 + FLAM_C SINE Alu 1 126 -17 2552 179 23 28 chr4 149474629 149475192 -52853155 - L1MC3 LINE L1 -23 7762 7203 1365 163 116 0 chr4 149475211 149475347 -52853000 - AluJo SINE Alu -24 288 169 455 0 18 0 chr4 149475347 149475402 -52852945 + (TTA)n Simple_repeat Simple_repeat 2 57 0 1365 163 116 0 chr4 149475402 149475523 -52852824 - AluJo SINE Alu -143 169 1 25 0 0 0 chr4 149475525 149475550 -52852797 + AT_rich Low_complexity Low_complexity 1 25 0 733 232 77 12 chr4 149475615 149475861 -52852486 + MIR SINE MIR 1 262 0 1682 144 17 50 chr4 149476410 149476708 -52851639 + AluJo SINE Alu 1 288 -24 226 233 0 0 chr4 149476717 149476760 -52851587 - MER5A DNA MER1_type -14 175 133 338 324 51 65 chr4 149476813 149477245 -52851102 - L1MEd LINE L1 -5376 743 318 535 215 74 25 chr4 149477308 149477471 -52850876 + MER58C DNA MER1_type 44 214 -1 277 288 18 9 chr4 149477563 149477674 -52850673 - L1MEd LINE L1 -5964 155 44 2845 140 43 10 chr4 149477826 149478544 -52849803 - LTR1B LTR ERV1 0 826 14 369 0 0 0 chr4 149478655 149478696 -52849651 + (TG)n Simple_repeat Simple_repeat 2 42 0 1655 160 16 39 chr4 149478827 149479134 -52849213 - AluJo SINE Alu -11 301 2 2117 114 0 19 chr4 149480465 149480773 -52847574 + AluSx SINE Alu 1 302 -10 210 71 0 0 chr4 149480918 149480946 -52847401 + (T)n Simple_repeat Simple_repeat 1 28 0 759 169 0 0 chr4 149481502 149481655 -52846692 + FLAM_C SINE Alu 1 153 0 216 0 0 0 chr4 149487146 149487170 -52841177 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1179 161 179 0 chr4 149488098 149488372 -52839975 + MER33 DNA MER1_type 1 323 -1 240 35 0 0 chr4 149488574 149488603 -52839744 + (T)n Simple_repeat Simple_repeat 1 29 0 223 347 42 11 chr4 149489335 149489430 -52838917 - MIR3 SINE MIR -22 186 89 406 283 119 11 chr4 149491765 149491942 -52836405 + L1ME4a LINE L1 5188 5383 -763 477 264 42 19 chr4 149492124 149492340 -52836007 + L1ME4a LINE L1 5690 5910 -211 279 250 66 7 chr4 149492347 149492483 -52835864 + L1ME4a LINE L1 5960 6103 -18 447 349 87 47 chr4 149492483 149492907 -52835440 - L2 LINE L2 -4 3268 2828 300 53 0 0 chr4 149493479 149493517 -52834830 + (TG)n Simple_repeat Simple_repeat 1 38 0 271 283 38 0 chr4 149493539 149493645 -52834702 - HAL1 LINE L1 -2199 308 199 256 297 51 8 chr4 149493645 149493763 -52834584 + MER91C DNA MER1_type 1 123 -17 414 261 46 20 chr4 149493784 149493937 -52834410 - HAL1 LINE L1 -2303 204 48 207 0 0 0 chr4 149494013 149494036 -52834311 + (TC)n Simple_repeat Simple_repeat 2 24 0 304 325 25 45 chr4 149494085 149494242 -52834105 + MIR3 SINE MIR 30 183 -25 205 281 0 18 chr4 149494275 149494332 -52834015 + L2 LINE L2 3256 3311 -2 234 176 118 29 chr4 149495335 149495403 -52832944 - MIR SINE MIR -64 198 125 1243 284 99 41 chr4 149495446 149496080 -52832267 - L2 LINE L2 -534 2780 2110 690 301 39 23 chr4 149496080 149496389 -52831958 + MER102a DNA MER1_type 1 314 -16 1759 142 42 0 chr4 149496710 149496998 -52831349 - AluJb SINE Alu -12 300 1 445 143 0 0 chr4 149497597 149497667 -52830680 - AluJo SINE Alu -19 293 224 845 194 0 0 chr4 149497667 149497806 -52830541 - AluSg/x SINE Alu -35 275 137 811 199 189 16 chr4 149497806 149497997 -52830350 - AluJo SINE Alu -88 224 1 454 308 39 16 chr4 149498010 149498192 -52830155 - MIR SINE MIR -66 196 11 1622 189 3 32 chr4 149498196 149498508 -52829839 - AluJo SINE Alu -9 303 1 229 267 163 30 chr4 149499589 149499724 -52828623 - MIR SINE MIR -2 260 108 248 333 37 105 chr4 149500589 149500940 -52827407 - L2 LINE L2 -5 3267 2941 9532 190 41 38 chr4 149501090 149501197 -52827150 - L1M3 LINE L1 -651 5517 5412 1867 166 7 23 chr4 149501197 149501505 -52826842 - AluSx SINE Alu -9 303 1 9532 190 41 38 chr4 149501505 149502602 -52825745 - L1M3 LINE L1 -756 5412 4320 1603 170 23 8 chr4 149502602 149502867 -52825480 + AluJo SINE Alu 30 298 -14 9532 190 41 38 chr4 149502867 149503674 -52824673 - L1M3 LINE L1 -1848 4320 3517 246 32 0 0 chr4 149503674 149503705 -52824642 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9532 190 41 38 chr4 149503705 149504199 -52824148 - L1M3 LINE L1 -2651 3517 3026 1850 179 0 3 chr4 149504199 149504496 -52823851 - AluJb SINE Alu -16 296 1 9532 190 41 38 chr4 149504496 149504625 -52823722 - L1M3 LINE L1 -3142 3026 2869 1618 191 0 30 chr4 149504625 149504923 -52823424 + AluJo SINE Alu 1 289 -23 9532 190 41 38 chr4 149504923 149504977 -52823370 - L1M3 LINE L1 -3299 2869 2817 3156 199 67 9 chr4 149506379 149507172 -52821175 - L1 LINE L1 -794 6771 5933 1402 185 43 28 chr4 149507947 149508271 -52820076 - L1 LINE L1 -7230 335 7 1280 244 16 82 chr4 149508676 149509251 -52819096 + L1MC4 LINE L1 6508 7044 -998 5702 100 1 1 chr4 149509352 149510149 -52818198 - HERVL LTR ERVL -1826 3828 3032 353 303 19 0 chr4 149510255 149510410 -52817937 - L1MD1 LINE L1 -8 6234 6077 201 74 0 0 chr4 149510439 149510466 -52817881 + (TG)n Simple_repeat Simple_repeat 2 28 0 253 277 0 48 chr4 149510466 149510549 -52817798 - L1MD2 LINE L1 -231 6128 6050 4358 153 22 0 chr4 149511052 149511808 -52816539 + L1P LINE L1 1 773 -5373 961 331 95 34 chr4 149511910 149512544 -52815803 - L2 LINE L2 -214 3099 2427 3252 196 14 14 chr4 149512718 149513478 -52814869 + L1 LINE L1 3386 4145 -2001 813 330 129 37 chr4 149513611 149514153 -52814194 + L2 LINE L2 76 667 -2647 5116 69 1 1 chr4 149514385 149515082 -52813265 - L1P LINE L1 -1946 4200 3504 2302 136 3 11 chr4 149515183 149515565 -52812782 + MLT2A1 LTR ERVL 26 404 -40 413 136 45 8 chr4 149515565 149515697 -52812650 + (TA)n Simple_repeat Simple_repeat 1 137 0 2631 127 2 2 chr4 149515698 149516116 -52812231 + HERVL-A1 LTR ERVL 72 489 -5165 2359 219 8 52 chr4 149516229 149516844 -52811503 - L1M1 LINE L1 -5657 1908 1321 945 200 131 20 chr4 149516861 149517106 -52811241 - L1M1 LINE L1 -7059 506 235 2064 119 83 16 chr4 149517197 149517361 -52810986 - L1MA2 LINE L1 0 6304 6153 3282 122 16 6 chr4 149517361 149517870 -52810477 + MER75 DNA T2_type 1 514 0 2064 119 83 16 chr4 149517870 149518090 -52810257 - L1MA2 LINE L1 -151 6153 5894 3223 236 15 24 chr4 149518196 149519301 -52809046 - L1M4c LINE L1 -4520 1793 800 1538 154 6 80 chr4 149519626 149519757 -52808590 + MLT2C1 LTR ERVL 79 218 -179 1908 144 0 24 chr4 149519757 149520048 -52808299 + AluSx SINE Alu 1 284 -28 222 62 0 0 chr4 149520048 149520080 -52808267 + (CCAA)n Simple_repeat Simple_repeat 2 33 0 1538 154 6 80 chr4 149520080 149520284 -52808063 + MLT2C1 LTR ERVL 216 390 -7 430 354 0 8 chr4 149520293 149520423 -52807924 + L2 LINE L2 3185 3313 0 219 338 49 28 chr4 149520553 149520695 -52807652 + L2 LINE L2 2591 2735 -579 232 164 104 45 chr4 149520704 149520771 -52807576 - L2 LINE L2 -49 3223 3153 538 249 221 5 chr4 149522204 149522417 -52805930 - MIR SINE MIR -1 261 3 339 226 0 0 chr4 149522507 149522569 -52805778 + MIR SINE MIR 103 164 -98 309 336 57 0 chr4 149522578 149522718 -52805629 + MLT1I LTR MaLR 14 161 -248 521 246 105 12 chr4 149522745 149522916 -52805431 + MLT1I LTR MaLR 221 407 -2 1218 173 49 4 chr4 149523233 149523458 -52804889 + MER46A DNA MER2_type 2 236 0 1842 153 10 19 chr4 149523881 149524195 -52804152 - AluSx SINE Alu -1 311 1 645 35 53 0 chr4 149524877 149524990 -52803357 + (TA)n Simple_repeat Simple_repeat 2 120 0 727 180 16 60 chr4 149525469 149525652 -52802695 - L1M4 LINE L1 -809 5337 5163 852 206 12 12 chr4 149525652 149525822 -52802525 - AluJ SINE Alu -13 299 130 694 239 67 0 chr4 149525822 149526031 -52802316 - L1M4 LINE L1 -979 5167 4945 314 229 0 0 chr4 149526044 149526114 -52802233 + LTR33A LTR ERVL 439 508 -15 197 167 0 0 chr4 149526280 149526316 -52802031 + MIR SINE MIR 119 154 -108 202 259 19 37 chr4 149527771 149527825 -52800522 - MIR3 SINE MIR -14 194 142 858 118 0 76 chr4 149528070 149528214 -52800133 - AluJ SINE Alu -179 133 1 555 308 108 18 chr4 149528715 149528994 -52799353 + L2 LINE L2 3008 3311 -2 378 313 84 37 chr4 149529222 149529436 -52798911 - L1MC4a LINE L1 -1878 5930 5707 1585 219 22 11 chr4 149529451 149529821 -52798526 + MLT1A2 LTR MaLR 1 374 0 281 231 33 107 chr4 149530287 149530408 -52797939 - MIR SINE MIR -118 144 33 700 144 34 75 chr4 149530606 149530752 -52797595 + MER2 DNA MER2_type 1 140 -205 * 1904 128 18 33 chr4 149530750 149531079 -52797268 + MER1B DNA MER1_type 16 339 0 477 96 0 0 chr4 149531079 149531152 -52797195 + MER2 DNA MER2_type 132 204 -141 1776 141 7 28 chr4 149531822 149532113 -52796234 + AluJo SINE Alu 12 296 -16 6543 8 0 0 chr4 149534903 149535670 -52792677 + L1HS LINE L1 5326 6092 -63 312 313 36 17 chr4 149536391 149536522 -52791825 - MER5A DNA MER1_type -11 167 34 307 277 193 18 chr4 149536562 149536747 -52791600 + MIR SINE MIR 19 234 -28 737 185 116 32 chr4 149536788 149536977 -52791370 - MIR SINE MIR -10 252 48 216 209 0 0 chr4 149537671 149537714 -52790633 + (TATG)n Simple_repeat Simple_repeat 2 44 0 399 293 92 52 chr4 149538240 149538489 -52789858 - Charlie8 DNA MER1_type -2158 259 1 225 154 0 0 chr4 149538590 149538629 -52789718 + (TG)n Simple_repeat Simple_repeat 1 39 0 351 44 0 0 chr4 149538973 149539018 -52789329 + (TC)n Simple_repeat Simple_repeat 2 46 0 279 0 0 0 chr4 149539017 149539048 -52789299 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 262 125 250 0 chr4 149539071 149539135 -52789212 - MADE1 DNA Mariner 0 80 1 707 223 61 69 chr4 149539815 149540058 -52788289 - MIR SINE MIR -6 256 20 400 387 53 29 chr4 149540636 149541013 -52787334 - L2 LINE L2 0 3272 2887 21 0 0 0 chr4 149541610 149541631 -52786716 + AT_rich Low_complexity Low_complexity 1 21 0 377 231 239 22 chr4 149542121 149542255 -52786092 - MIR3 SINE MIR -9 199 37 186 133 0 0 chr4 149544246 149544276 -52784071 + (TA)n Simple_repeat Simple_repeat 2 31 0 27 29 0 0 chr4 149545368 149545402 -52782945 + AT_rich Low_complexity Low_complexity 1 34 0 590 158 127 63 chr4 149545426 149545584 -52782763 - MER2 DNA MER2_type -177 168 1 770 234 88 40 chr4 149546751 149546978 -52781369 + MIR SINE MIR 3 240 -22 188 313 0 0 chr4 149547659 149547707 -52780640 - L2 LINE L2 -6 3266 3219 224 272 18 97 chr4 149548174 149548288 -52780059 + MIR3 SINE MIR 76 180 -28 392 178 15 0 chr4 149548301 149548382 -52779965 + MER3 DNA MER1_type 38 2333 0 547 159 274 25 chr4 149548553 149548754 -52779593 + MER3 DNA MER1_type 2372 2622 0 375 239 67 22 chr4 149549036 149549170 -52779177 + L1ME4a LINE L1 5979 6118 -3 394 318 139 22 chr4 149551054 149551328 -52777019 - L3 LINE CR1 -38 1539 1234 225 0 0 0 chr4 149552002 149552027 -52776320 + (A)n Simple_repeat Simple_repeat 1 25 0 1968 104 41 0 chr4 149552034 149552329 -52776018 + AluSc SINE Alu 1 306 0 321 348 93 42 chr4 149552570 149552829 -52775518 + L2 LINE L2 2985 3256 -16 185 0 40 0 chr4 149553991 149554016 -52774331 + (CAAAAA)n Simple_repeat Simple_repeat 5 30 0 190 366 80 9 chr4 149554401 149554513 -52773834 + L3b LINE CR1 1447 1566 -17 37265 38 4 0 chr4 149554704 149560249 -52768098 + L1PA3 LINE L1 603 6155 0 14153 35 0 0 chr4 149560246 149562039 -52766308 + L1P LINE L1 3225 5017 -1129 * 7568 31 2 0 chr4 149562144 149563441 -52764906 + L1PA4 LINE L1 4873 6154 -1 262 236 4 0 chr4 149565449 149565516 -52762831 - MIR SINE MIR -103 105 38 2473 108 84 30 chr4 149566615 149566948 -52761399 + MSTA LTR MaLR 1 361 -67 2293 123 0 0 chr4 149566948 149567258 -52761089 - AluSx SINE Alu -2 310 1 2473 108 84 30 chr4 149567258 149567330 -52761017 + MSTA LTR MaLR 361 428 0 213 227 0 0 chr4 149567351 149567395 -52760952 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 2517 66 0 0 chr4 149567853 149568155 -52760192 - AluY SINE Alu -9 302 1 251 230 0 0 chr4 149568159 149568225 -52760122 + MLT2C2 LTR ERVL 408 464 0 294 266 55 83 chr4 149568225 149568334 -52760013 + L2 LINE L2 3184 3289 -24 234 276 128 43 chr4 149568823 149568933 -52759414 + L1ME4a LINE L1 5713 5812 -309 2093 146 0 0 chr4 149568933 149569235 -52759112 - AluSx SINE Alu -10 302 1 234 276 128 43 chr4 149569235 149569475 -52758872 + L1ME4a LINE L1 5812 6093 -28 495 0 0 0 chr4 149571281 149571336 -52757011 + (TG)n Simple_repeat Simple_repeat 2 56 0 329 370 19 6 chr4 149571582 149571744 -52756603 + L2 LINE L2 2555 2718 -596 378 258 108 21 chr4 149571987 149572065 -52756282 + L1ME4a LINE L1 5653 5723 -398 180 0 0 0 chr4 149572065 149572085 -52756262 + (TG)n Simple_repeat Simple_repeat 2 21 0 378 258 108 21 chr4 149572085 149572192 -52756155 + L1ME4a LINE L1 5723 5854 -267 1053 193 64 77 chr4 149572254 149572679 -52755668 + MER66A LTR ERV1 148 468 -10 289 284 34 0 chr4 149573324 149573412 -52754935 - L2 LINE L2 -656 2658 2568 208 268 0 24 chr4 149573424 149573506 -52754841 + (TAA)n Simple_repeat Simple_repeat 2 81 0 825 194 39 0 chr4 149573668 149573848 -52754499 + L1MB3 LINE L1 5997 6183 0 697 158 193 55 chr4 149574266 149574468 -52753879 - MER46A DNA MER2_type -3 233 4 203 331 117 28 chr4 149575276 149575421 -52752926 + L2 LINE L2 3104 3261 -11 227 271 12 12 chr4 149577070 149577155 -52751192 + L1MC4 LINE L1 5725 5809 -1976 301 270 45 22 chr4 149577171 149577260 -52751087 + L1MC4 LINE L1 6614 6704 -1338 * 336 232 84 11 chr4 149577231 149577326 -52751021 - L1MC4 LINE L1 -1339 6703 6602 1592 149 6 104 chr4 149578152 149578480 -52749867 - AluJo SINE Alu -16 296 1 27 29 0 0 chr4 149578653 149578687 -52749660 + AT_rich Low_complexity Low_complexity 1 34 0 204 276 0 0 chr4 149578738 149578796 -52749551 - MER5B DNA MER1_type -23 155 98 21 0 0 0 chr4 149578956 149578977 -52749370 + AT_rich Low_complexity Low_complexity 1 21 0 769 133 0 9 chr4 149580290 149580403 -52747944 - FLAM_C SINE Alu -20 123 12 448 306 105 18 chr4 149582018 149582247 -52746100 - MIR SINE MIR 0 262 14 265 258 17 0 chr4 149582265 149582385 -52745962 + (CAGC)n Simple_repeat Simple_repeat 2 123 0 282 311 66 115 chr4 149582713 149583018 -52745329 + L2 LINE L2 2960 3249 -23 196 361 24 0 chr4 149583013 149583096 -52745251 - L2 LINE L2 -2 3311 3227 * 2125 97 3 20 chr4 149583686 149583986 -52744361 - AluSg SINE Alu -15 295 1 1881 151 54 3 chr4 149584505 149584836 -52743511 - MER7A DNA MER2_type 0 346 1 1775 164 30 7 chr4 149585883 149586181 -52742166 - AluSx SINE Alu -7 305 1 521 323 26 16 chr4 149587024 149587213 -52741134 + MIR3 SINE MIR 2 192 -16 6812 25 15 0 chr4 149588290 149589675 -52738672 + L1PA3 LINE L1 4698 6099 -56 719 138 105 53 chr4 149589775 149589927 -52738420 - MER2 DNA MER2_type -184 161 2 750 294 103 18 chr4 149591514 149591854 -52736493 + L2 LINE L2 2119 2487 -827 314 236 42 0 chr4 149591963 149592035 -52736312 + MER21B LTR ERV1 16 90 -773 1016 164 5 66 chr4 149592121 149592334 -52736013 + MER21B LTR ERV1 137 336 -527 544 317 91 5 chr4 149592548 149592734 -52735613 - MIR SINE MIR -57 205 4 572 154 154 7 chr4 149593604 149593740 -52734607 - MER3 DNA MER1_type -17 192 37 293 221 16 16 chr4 149593740 149593867 -52734480 + (TA)n Simple_repeat Simple_repeat 1 127 0 377 234 76 76 chr4 149594030 149594201 -52734146 - MIR SINE MIR 0 262 92 389 242 126 51 chr4 149594226 149594519 -52733828 + L1ME4a LINE L1 5800 6114 -7 750 189 194 0 chr4 149594717 149594892 -52733455 + MER3 DNA MER1_type 1 209 0 294 189 0 0 chr4 149594849 149594902 -52733445 - MER3 DNA MER1_type -119 90 38 * 229 271 77 19 chr4 149595075 149595230 -52733117 + L1MC4a LINE L1 3812 3975 -2171 798 241 30 39 chr4 149595555 149595787 -52732560 + MIR SINE MIR 12 241 -21 366 325 66 22 chr4 149595845 149596073 -52732274 + L1MC4a LINE L1 4349 4586 -1560 262 345 9 13 chr4 149596166 149596395 -52731952 + L1MC4a LINE L1 4742 4969 -1177 3471 200 38 37 chr4 149596523 149597382 -52730965 + L1MA9 LINE L1 5415 6274 -38 22 35 0 0 chr4 149597382 149597411 -52730936 + AT_rich Low_complexity Low_complexity 1 29 0 1937 141 0 30 chr4 149597413 149597712 -52730635 + AluSx SINE Alu 3 292 -20 1003 277 153 16 chr4 149597845 149598426 -52729921 + L1MC4a LINE L1 5270 5816 -350 40 0 0 0 chr4 149600192 149600232 -52728115 + AT_rich Low_complexity Low_complexity 1 40 0 2113 138 0 6 chr4 149601109 149601420 -52726927 - AluSx SINE Alu -1 311 3 500 298 32 0 chr4 149603665 149603853 -52724494 + L1M4 LINE L1 3706 3899 -2247 442 313 142 18 chr4 149603861 149604142 -52724205 + MLT1J LTR MaLR 14 329 -182 271 55 18 36 chr4 149604523 149604578 -52723769 + L1MA9 LINE L1 6259 6312 0 349 278 61 50 chr4 149604713 149604893 -52723454 - L1MEd LINE L1 -4864 1255 1074 3087 211 86 38 chr4 149604911 149604954 -52723393 - L1MD2 LINE L1 -20 6339 6300 2369 102 3 0 chr4 149604954 149605259 -52723088 + AluSx SINE Alu 2 307 -5 3087 211 86 38 chr4 149605259 149606086 -52722261 - L1MD2 LINE L1 -59 6300 5427 406 169 13 13 chr4 149606210 149606287 -52722060 + Tigger2 DNA MER2_type 1 77 -2641 1867 163 0 10 chr4 149606334 149606628 -52721719 + AluJb SINE Alu 3 293 -19 568 212 42 73 chr4 149606633 149606798 -52721549 - MER8 DNA MER2_type -79 160 1 1021 316 118 57 chr4 149607317 149608426 -52719921 + L2 LINE L2 252 1428 -1886 180 358 0 12 chr4 149608445 149608526 -52719821 + MIR SINE MIR 183 262 0 367 212 178 34 chr4 149608803 149608949 -52719398 + MLT1K LTR MaLR 395 561 -27 25 31 0 0 chr4 149610313 149610345 -52718002 + AT_rich Low_complexity Low_complexity 1 32 0 1211 204 43 9 chr4 149610366 149610596 -52717751 + MER8 DNA MER2_type 2 239 0 313 271 107 28 chr4 149610730 149610907 -52717440 + MIR SINE MIR 72 262 0 1950 153 7 0 chr4 149611404 149611698 -52716649 - AluSx SINE Alu -13 299 4 2146 106 43 27 chr4 149611848 149612217 -52716130 + THE1C LTR MaLR 1 375 0 15739 137 33 18 chr4 149612550 149615098 -52713249 - Tigger4(Zombi) DNA MER2_type 0 2731 138 1921 164 3 0 chr4 149615098 149615397 -52712950 - AluSx SINE Alu -12 300 1 15739 137 33 18 chr4 149615397 149615538 -52712809 - Tigger4(Zombi) DNA MER2_type -2593 138 1 1373 265 85 13 chr4 149615948 149616405 -52711942 + LTR16C LTR ERVL 1 490 -1 1341 166 31 48 chr4 149616895 149617251 -52711096 + Charlie5 DNA MER1_type 2275 2624 0 255 297 81 0 chr4 149617662 149617736 -52710611 - MIR3 SINE MIR -42 166 87 477 274 79 5 chr4 149617853 149618043 -52710304 - HAL1 LINE L1 -112 2395 2192 5351 212 31 8 chr4 149618126 149619822 -52708525 + L1PA16 LINE L1 4128 5859 -307 1330 26 0 0 chr4 149619855 149620009 -52708338 - L1PA5 LINE L1 -9 6145 5992 2873 35 0 0 chr4 149620010 149620352 -52707995 + L1PA5 LINE L1 5642 5983 -172 6292 78 0 7 chr4 149621698 149622883 -52705464 - L1PA10 LINE L1 -1 6167 4978 851 193 6 28 chr4 149623577 149623758 -52704589 + FRAM SINE Alu 1 176 0 1888 175 159 0 chr4 149624526 149624915 -52703432 - MLT1D LTR MaLR -54 451 1 245 29 29 0 chr4 149625875 149625909 -52702438 + (CA)n Simple_repeat Simple_repeat 1 35 0 6474 112 15 17 chr4 149626245 149626589 -52701758 - L1MA3 LINE L1 0 6305 5962 2909 154 10 14 chr4 149626589 149627077 -52701270 - MER66B LTR ERV1 0 486 1 6474 112 15 17 chr4 149627077 149627786 -52700561 - L1MA3 LINE L1 -343 5962 5254 344 226 135 54 chr4 149627836 149628028 -52700319 + MIR SINE MIR 2 212 -50 361 206 40 148 chr4 149628495 149628718 -52699629 + L1MC/D LINE L1 5609 5807 -2001 1273 88 0 6 chr4 149628750 149628910 -52699437 + AluSg SINE Alu 1 159 -151 836 71 0 0 chr4 149629002 149629100 -52699247 + AluSg SINE Alu 159 256 -54 1550 202 67 21 chr4 149629601 149629973 -52698374 + MLT1B LTR MaLR 1 389 -1 198 0 0 0 chr4 149630411 149630433 -52697914 + (CTG)n Simple_repeat Simple_repeat 1 22 0 2108 123 0 10 chr4 149631062 149631531 -52696816 + AluSx SINE Alu 1 466 0 22 80 0 0 chr4 149633048 149633098 -52695249 + AT_rich Low_complexity Low_complexity 1 50 0 200 98 0 49 chr4 149633615 149633656 -52694691 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 232 276 224 20 chr4 149634324 149634476 -52693871 + MIR3 SINE MIR 4 186 -22 334 345 9 0 chr4 149634509 149634619 -52693728 + L2 LINE L2 3202 3312 -1 381 43 0 0 chr4 149635164 149635211 -52693136 + (CA)n Simple_repeat Simple_repeat 1 47 0 385 289 8 171 chr4 149635678 149636041 -52692306 - L2 LINE L2 -1 3271 2968 570 314 132 31 chr4 149636611 149637088 -52691259 - L2 LINE L2 -752 2562 2038 2741 3 0 3 chr4 149637389 149637687 -52690660 + AluYa5 SINE Alu 1 297 -14 236 272 33 0 chr4 149637792 149637884 -52690463 - L1MC4 LINE L1 -1334 6708 6614 203 363 44 56 chr4 149638945 149639105 -52689242 + MIR3 SINE MIR 43 200 -8 1561 268 55 28 chr4 149639858 149640622 -52687725 - L1M4 LINE L1 -810 5336 4552 512 274 38 50 chr4 149640619 149640851 -52687496 + L1ME LINE L1 5396 5637 -525 * 533 189 45 213 chr4 149640933 149641224 -52687123 + MIR SINE MIR 21 262 0 421 205 172 13 chr4 149642048 149642199 -52686148 - MER115 DNA AcHobo 0 693 519 794 294 282 0 chr4 149642232 149642572 -52685775 - MER115 DNA AcHobo -257 436 1 187 280 113 67 chr4 149643152 149643302 -52685045 + MIR SINE MIR 93 249 -13 557 88 0 152 chr4 149644112 149644237 -52684110 + AluSc SINE Alu 3 108 -201 1718 98 105 63 chr4 149644554 149644840 -52683507 + AluSc SINE Alu 3 300 -9 298 278 48 63 chr4 149645159 149645411 -52682936 + L1MC5 LINE L1 7660 7907 -54 381 172 0 0 chr4 149645450 149645514 -52682833 - MIR SINE MIR -123 139 76 5657 170 53 11 chr4 149645740 149647809 -52680538 - L1MA7 LINE L1 -6 6285 4132 560 285 28 33 chr4 149647817 149648031 -52680316 - L1M3b LINE L1 -6068 213 1 1405 220 93 28 chr4 149648281 149648668 -52679679 + MER66A LTR ERV1 27 438 -40 309 325 41 32 chr4 149649002 149649125 -52679222 - L3 LINE CR1 -7 1570 1447 312 346 48 21 chr4 149649166 149649354 -52678993 + L2 LINE L2 2282 2474 -840 3334 159 20 30 chr4 149649360 149650015 -52678332 - L1MC1 LINE L1 -6 6327 5680 185 250 104 31 chr4 149650105 149650201 -52678146 - MIR SINE MIR -96 166 64 432 0 0 0 chr4 149651071 149651119 -52677228 + (TA)n Simple_repeat Simple_repeat 2 49 0 446 296 99 14 chr4 149652132 149652274 -52676073 + MER91A DNA MER1_type 21 174 -22 1785 198 34 33 chr4 149652659 149653127 -52675220 - MER31B LTR ERV1 0 661 1 1088 161 129 14 chr4 149654905 149654984 -52673363 - MER33 DNA MER1_type -2262 323 255 306 0 0 0 chr4 149654984 149655018 -52673329 + (ATG)n Simple_repeat Simple_repeat 1 34 0 1728 156 3 37 chr4 149655018 149655313 -52673034 - AluSx SINE Alu -27 285 1 1088 161 129 14 chr4 149655313 149655518 -52672829 - MER33 DNA MER1_type -2329 256 5 678 337 96 33 chr4 149655653 149656353 -52671994 + L1MEd LINE L1 4 747 -5372 644 258 63 60 chr4 149656353 149656687 -52671660 - LTR24B LTR ERV1 -6 570 236 344 200 0 0 chr4 149656770 149656830 -52671517 - LTR24B LTR ERV1 -499 77 18 236 264 40 92 chr4 149656862 149657135 -52671212 + L1MEd LINE L1 755 1013 -5106 1376 245 33 15 chr4 149657989 149658320 -52670027 + MLT1A1 LTR MaLR 1 337 -28 910 264 118 10 chr4 149659641 149659929 -52668418 + MLT1J1 LTR MaLR 1 319 -127 243 215 0 101 chr4 149659938 149660017 -52668330 - L1MC/D LINE L1 -2015 5793 5723 312 48 0 0 chr4 149660065 149660107 -52668240 + (T)n Simple_repeat Simple_repeat 1 42 0 24 32 0 0 chr4 149660891 149660922 -52667425 + AT_rich Low_complexity Low_complexity 1 31 0 351 348 125 15 chr4 149661058 149661336 -52667011 + MLT1J1 LTR MaLR 13 319 -127 294 50 0 0 chr4 149661477 149661517 -52666830 + (T)n Simple_repeat Simple_repeat 1 40 0 4046 166 52 32 chr4 149663281 149663479 -52664868 + L1MB2 LINE L1 5186 5378 -793 2167 100 7 0 chr4 149663479 149663769 -52664578 + AluY SINE Alu 1 292 -19 4046 166 52 32 chr4 149663769 149664547 -52663800 + L1MB2 LINE L1 5378 6170 -1 22 0 0 0 chr4 149664547 149664569 -52663778 + AT_rich Low_complexity Low_complexity 1 22 0 4692 147 40 63 chr4 149664651 149666180 -52662167 + L1MA9 LINE L1 4819 6312 0 531 194 32 97 chr4 149666351 149666537 -52661810 + L1MA9 LINE L1 6132 6305 -7 15486 124 21 3 chr4 149666635 149668986 -52659361 - Tigger1 DNA MER2_type 0 2418 25 185 284 30 60 chr4 149669734 149669801 -52658546 - L2 LINE L2 -2 3311 3247 705 190 37 0 chr4 149670307 149670470 -52657877 - L1MB2 LINE L1 -2 6169 6001 22 35 0 0 chr4 149671940 149671969 -52656378 + AT_rich Low_complexity Low_complexity 1 29 0 1893 162 0 3 chr4 149672343 149672639 -52655708 + AluJb SINE Alu 3 297 -15 392 245 49 21 chr4 149673241 149673384 -52654963 + GA-rich Low_complexity Low_complexity 3 149 0 286 267 0 0 chr4 149673790 149673865 -52654482 + LTR43 LTR ERV1 222 296 -306 584 239 31 0 chr4 149674485 149674615 -52653732 + MER94 DNA DNA 1 134 0 284 79 0 0 chr4 149677370 149677408 -52650939 - MADE1 DNA Mariner -42 38 1 205 238 63 32 chr4 149678388 149678451 -52649896 - MIR SINE MIR -38 224 160 231 36 0 0 chr4 149679206 149679234 -52649113 + (CA)n Simple_repeat Simple_repeat 1 28 0 673 286 97 9 chr4 149679377 149679604 -52648743 - MIR SINE MIR -14 248 2 2330 97 0 0 chr4 149679953 149680278 -52648069 - AluSq SINE Alu 0 313 1 21 0 0 0 chr4 149682005 149682026 -52646321 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr4 149682220 149682249 -52646098 + AT_rich Low_complexity Low_complexity 1 29 0 1788 181 0 7 chr4 149682885 149683189 -52645158 + AluJo SINE Alu 3 304 -8 201 275 14 0 chr4 149684342 149684411 -52643936 + (TA)n Simple_repeat Simple_repeat 2 71 0 218 227 0 0 chr4 149684529 149684573 -52643774 + (TA)n Simple_repeat Simple_repeat 2 45 0 582 114 0 0 chr4 149684671 149684750 -52643597 - THE1B LTR MaLR -285 79 1 11361 96 15 4 chr4 149684750 149686312 -52642035 - THE1B-int LTR MaLR 0 1580 2 2086 143 36 17 chr4 149686314 149686670 -52641677 - THE1B LTR MaLR -1 363 1 2242 128 0 0 chr4 149686802 149687108 -52641239 - AluSx SINE Alu -4 308 3 359 256 231 13 chr4 149687149 149687305 -52641042 - MER102b DNA MER1_type -49 292 103 488 240 27 34 chr4 149687406 149687552 -52640795 + MIR SINE MIR 100 244 -18 379 252 26 9 chr4 149689697 149689812 -52638535 - Looper DNA T2_type -5 1553 1437 * 823 169 58 11 chr4 149689809 149689998 -52638349 - Looper DNA T2_type -1346 212 15 813 261 12 35 chr4 149689999 149690256 -52638091 + L1MEd LINE L1 963 1213 -4906 728 168 0 8 chr4 149690694 149690813 -52637534 + FLAM_C SINE Alu 1 118 -15 22 0 0 0 chr4 149691360 149691382 -52636965 + AT_rich Low_complexity Low_complexity 1 22 0 515 258 23 8 chr4 149691423 149691555 -52636792 + MIR SINE MIR 55 188 -74 264 250 0 0 chr4 149691557 149691617 -52636730 + Looper DNA T2_type 6 65 -1493 247 147 15 162 chr4 149691617 149691685 -52636662 + MIR SINE MIR 205 262 0 43 88 0 0 chr4 149691685 149691798 -52636549 + AT_rich Low_complexity Low_complexity 1 113 0 1367 104 36 5 chr4 149691858 149692079 -52636268 - L1PB2 LINE L1 -15 6136 5909 22 0 0 0 chr4 149692387 149692409 -52635938 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 149692478 149692501 -52635846 + AT_rich Low_complexity Low_complexity 1 23 0 288 373 0 0 chr4 149692691 149692793 -52635554 + GA-rich Low_complexity Low_complexity 3 104 0 569 347 24 20 chr4 149692979 149693227 -52635120 + MIR SINE MIR 12 260 -2 1872 167 3 10 chr4 149694602 149694913 -52633434 + AluJo SINE Alu 4 312 0 27 0 0 0 chr4 149695279 149695306 -52633041 + AT_rich Low_complexity Low_complexity 1 27 0 488 247 120 0 chr4 149695413 149695571 -52632776 + MER5B DNA MER1_type 2 178 0 363 297 36 9 chr4 149695609 149695720 -52632627 - MIR SINE MIR -65 143 30 241 290 43 36 chr4 149696054 149696192 -52632155 + L1ME LINE L1 5611 5749 -372 9806 105 14 2 chr4 149696772 149698330 -52630017 + L1P LINE L1 2963 4538 -1608 691 263 28 46 chr4 149698733 149698950 -52629397 - MIR SINE MIR -49 213 1 475 241 88 47 chr4 149699858 149699952 -52628395 - MIR SINE MIR 0 262 156 553 182 77 35 chr4 149699952 149700122 -52628225 + MER104 DNA MER2_type 3 179 -1 475 241 88 47 chr4 149700122 149700197 -52628150 - MIR SINE MIR -106 156 86 1543 110 5 5 chr4 149700383 149700592 -52627755 + AluSg/x SINE Alu 93 301 -11 181 255 90 53 chr4 149700738 149700894 -52627453 - MIR SINE MIR 0 262 101 401 237 233 28 chr4 149701080 149701295 -52627052 + L1MEd LINE L1 49 307 -5812 2212 102 3 0 chr4 149701314 149701607 -52626740 + AluY SINE Alu 1 294 -17 314 302 96 56 chr4 149701739 149702382 -52625965 + L1MEd LINE L1 447 1115 -5004 12916 29 1 1 chr4 149703675 149705305 -52623042 - L1P LINE L1 -1379 4767 3138 4517 21 0 0 chr4 149705303 149706009 -52622338 + L1P1 LINE L1 4832 5537 -618 * 2053 137 36 3 chr4 149707046 149707383 -52620964 - MER7A DNA MER2_type 0 346 1 1583 146 13 0 chr4 149708189 149708428 -52619919 - AluSx SINE Alu -16 296 55 2332 105 3 0 chr4 149708593 149708898 -52619449 + AluSp SINE Alu 1 306 -7 913 213 30 0 chr4 149709131 149709300 -52619047 - FAM SINE Alu 0 175 2 372 250 250 0 chr4 149709490 149709606 -52618741 + MIR SINE MIR 52 196 -66 235 232 18 0 chr4 149709913 149709969 -52618378 + (CA)n Simple_repeat Simple_repeat 2 58 0 189 328 0 0 chr4 149710007 149710065 -52618282 + L2 LINE L2 3242 3299 -14 317 296 79 25 chr4 149710154 149710357 -52617990 + L1ME LINE L1 5534 5747 -374 2113 155 29 0 chr4 149710731 149711080 -52617267 + L1PA16 LINE L1 5799 6157 -9 2169 115 0 0 chr4 149712450 149712737 -52615610 - AluSx SINE Alu -25 287 1 388 267 145 53 chr4 149713718 149713980 -52614367 - L2 LINE L2 0 3313 3028 23 33 0 0 chr4 149714283 149714313 -52614034 + AT_rich Low_complexity Low_complexity 1 30 0 188 264 149 11 chr4 149714329 149714416 -52613931 - L2 LINE L2 -374 2939 2841 2453 15 0 0 chr4 149716015 149716286 -52612061 - AluYa5 SINE Alu -4 307 37 1160 229 71 116 chr4 149718187 149718456 -52609891 + MLT1G LTR MaLR 1 227 -363 2594 105 6 3 chr4 149718456 149718819 -52609528 - THE1B LTR MaLR 0 364 1 1160 229 71 116 chr4 149718819 149719126 -52609221 + MLT1G LTR MaLR 227 546 -44 730 219 273 15 chr4 149719862 149720273 -52608074 - LTR33A LTR ERVL 0 523 7 949 195 65 28 chr4 149720606 149720821 -52607526 - MER58A DNA MER1_type -1 223 1 987 84 28 0 chr4 149721269 149721411 -52606936 + L1PB2 LINE L1 6003 6148 -3 24 67 0 0 chr4 149722265 149722310 -52606037 + AT_rich Low_complexity Low_complexity 1 45 0 939 194 97 4 chr4 149722619 149722856 -52605491 + L1ME1 LINE L1 5645 5903 -263 408 213 106 16 chr4 149722858 149723012 -52605335 + L1ME1 LINE L1 6000 6164 0 243 0 0 0 chr4 149723978 149724006 -52604341 + AluY SINE Alu 17 44 -255 448 248 9 0 chr4 149724110 149724215 -52604132 - L2 LINE L2 -803 2511 2406 317 322 0 0 chr4 149724387 149724477 -52603870 + L1MC4 LINE L1 6614 6703 -1339 311 262 71 0 chr4 149724415 149724499 -52603848 - L1MC4 LINE L1 -1339 6703 6614 * 574 224 38 3 chr4 149724991 149725144 -52603203 + MIR SINE MIR 34 241 -21 227 208 75 0 chr4 149725277 149725330 -52603017 + MIR SINE MIR 122 178 -84 321 305 149 0 chr4 149725409 149725563 -52602784 + MIR SINE MIR 81 257 -5 378 0 0 0 chr4 149726172 149726214 -52602133 + (CA)n Simple_repeat Simple_repeat 2 43 0 443 304 62 46 chr4 149726340 149726646 -52601701 - L1M4 LINE L1 -3526 2620 2310 2449 111 21 13 chr4 149727123 149727509 -52600838 - L1PA14 LINE L1 -1 6160 5772 445 332 55 25 chr4 149728120 149728355 -52599992 + MIR SINE MIR 2 243 -19 270 0 0 0 chr4 149728821 149728851 -52599496 + (CA)n Simple_repeat Simple_repeat 2 31 0 285 333 108 0 chr4 149729978 149730098 -52598249 + L3 LINE CR1 582 714 -863 302 242 158 8 chr4 149730099 149730219 -52598128 + MLT1J LTR MaLR 4 141 -370 297 315 43 33 chr4 149730310 149730494 -52597853 + MLT1J LTR MaLR 324 509 -2 398 284 71 82 chr4 149730495 149730777 -52597570 + L3 LINE CR1 724 1002 -575 474 303 76 21 chr4 149730805 149731043 -52597304 - MER102a DNA MER1_type -13 317 67 205 270 122 27 chr4 149731110 149731184 -52597163 + L3 LINE CR1 1011 1091 -486 624 296 5 25 chr4 149731223 149731419 -52596928 + MIR SINE MIR 6 197 -65 620 306 86 55 chr4 149731450 149731868 -52596479 + L3 LINE CR1 1141 1571 -6 475 94 0 0 chr4 149732207 149732271 -52596076 + AluJ/FLAM SINE Alu 1 64 -248 194 288 0 68 chr4 149732372 149732445 -52595902 - L2 LINE L2 -48 3265 3198 3341 96 10 20 chr4 149732445 149732689 -52595658 + MER84 LTR ERVI 1 246 -261 3675 53 0 0 chr4 149732689 149733144 -52595203 - L1PA5 LINE L1 0 6154 5700 3341 96 10 20 chr4 149733144 149733410 -52594937 + MER84 LTR ERVI 246 506 -1 342 277 59 10 chr4 149733514 149733615 -52594732 - L2 LINE L2 -252 3061 2956 186 167 0 0 chr4 149735223 149735259 -52593088 + (CATA)n Simple_repeat Simple_repeat 2 37 0 443 278 110 49 chr4 149735400 149735645 -52592702 - L3 LINE CR1 -3 1574 1315 352 296 101 0 chr4 149735738 149735897 -52592450 - Charlie8 DNA MER1_type -2152 265 91 439 323 0 8 chr4 149735909 149736042 -52592305 - MIR3 SINE MIR -17 191 60 945 192 80 18 chr4 149736248 149736472 -52591875 + MIR SINE MIR 23 260 -2 197 250 77 0 chr4 149737349 149737401 -52590946 - MIR SINE MIR -8 254 199 40 21 0 0 chr4 149738949 149738996 -52589351 + GC_rich Low_complexity Low_complexity 1 47 0 3474 178 40 17 chr4 149739726 149740479 -52587868 + L1MB8 LINE L1 5404 6173 -5 323 103 0 17 chr4 149742053 149742111 -52586236 + (TG)n Simple_repeat Simple_repeat 1 57 0 737 185 7 15 chr4 149742472 149742607 -52585740 - MER5A DNA MER1_type -48 141 8 1341 231 211 6 chr4 149743671 149744164 -52584183 + L1MC4 LINE L1 6461 7054 -988 185 238 0 0 chr4 149744569 149744611 -52583736 + MIR3 SINE MIR 152 193 -15 284 301 62 34 chr4 149744756 149744902 -52583445 + L2 LINE L2 3164 3313 0 562 224 48 9 chr4 149744965 149745175 -52583172 + HsTC2 DNA Tc2 1671 1888 -10 429 287 80 36 chr4 149745189 149745515 -52582832 - L1ME LINE L1 -610 5511 5176 528 266 52 40 chr4 149746076 149746249 -52582098 + MIR3 SINE MIR 32 206 -2 28 0 0 0 chr4 149746705 149746733 -52581614 + AT_rich Low_complexity Low_complexity 1 28 0 6375 131 65 38 chr4 149748271 149749385 -52578962 - Tigger3b DNA MER2_type -1799 1229 78 2180 129 0 0 chr4 149749385 149749688 -52578659 - AluSx SINE Alu -9 303 1 6375 131 65 38 chr4 149749688 149749769 -52578578 - Tigger3b DNA MER2_type -2950 78 1 308 208 91 0 chr4 149751144 149751221 -52577126 + MER112 DNA MER1_type 88 171 -89 188 308 0 0 chr4 149752831 149752883 -52575464 - MIR3 SINE MIR -17 191 140 503 304 94 11 chr4 149753957 149754138 -52574209 + MIR SINE MIR 23 218 -44 202 329 51 77 chr4 149754369 149754682 -52573665 - L2 LINE L2 -3 3310 3006 475 341 61 61 chr4 149754749 149755110 -52573237 + L1ME LINE L1 3 363 -5707 237 81 27 0 chr4 149755154 149755191 -52573156 + MER4D LTR ERV1 280 317 -555 392 289 31 55 chr4 149755361 149755490 -52572857 + MER34B LTR ERV1 282 413 -152 1430 187 59 14 chr4 149755490 149755779 -52572568 - AluJo SINE Alu -10 302 1 392 289 31 55 chr4 149755779 149755940 -52572407 + MER34B LTR ERV1 413 565 0 285 122 0 0 chr4 149756171 149756220 -52572127 + MER20 DNA MER1_type 165 213 -6 221 368 11 11 chr4 149756270 149756365 -52571982 + MIR SINE MIR 50 144 -64 23 33 0 0 chr4 149757037 149757067 -52571280 + AT_rich Low_complexity Low_complexity 1 30 0 276 28 0 0 chr4 149757234 149757270 -52571077 - L1P LINE L1 -3937 2209 2174 17276 112 1 1 chr4 149757370 149760758 -52567589 + L1PA7 LINE L1 2751 6146 -8 566 107 0 0 chr4 149760766 149760850 -52567497 + MSTA-int LTR MaLR 1568 1651 0 2552 124 49 10 chr4 149760852 149761262 -52567085 + MSTA LTR MaLR 3 428 0 1304 271 59 13 chr4 149762832 149763308 -52565039 + L1MC4 LINE L1 7406 7903 -139 1719 280 76 81 chr4 149763582 149764683 -52563664 - L2 LINE L2 0 3313 2218 228 232 232 40 chr4 149765606 149765757 -52562590 + MIR SINE MIR 24 203 -59 1736 141 7 46 chr4 149765867 149766172 -52562175 + AluJo SINE Alu 1 293 -19 392 217 48 0 chr4 149766480 149766563 -52561784 + L2 LINE L2 3186 3272 0 589 252 107 64 chr4 149766578 149766812 -52561535 - MIR SINE MIR -12 250 7 302 238 36 12 chr4 149768178 149768262 -52560085 + MIR3 SINE MIR 123 208 0 1586 143 6 67 chr4 149768474 149768788 -52559559 + AluSx SINE Alu 13 307 -5 1660 315 162 29 chr4 149768918 149769808 -52558539 + L2 LINE L2 1191 2322 -992 2015 135 3 3 chr4 149769808 149770112 -52558235 - AluSx SINE Alu -8 304 1 1660 315 162 29 chr4 149770112 149770565 -52557782 + L2 LINE L2 2322 2713 -601 501 289 107 82 chr4 149770639 149771041 -52557306 + L2 LINE L2 2872 3283 -30 27 29 0 0 chr4 149771863 149771897 -52556450 + AT_rich Low_complexity Low_complexity 1 34 0 1198 178 33 0 chr4 149773902 149774116 -52554231 - AluJb SINE Alu -8 304 84 1020 265 90 34 chr4 149774136 149774548 -52553799 - MLT1J2 LTR MaLR -13 437 3 26 64 0 0 chr4 149775002 149775049 -52553298 + AT_rich Low_complexity Low_complexity 1 47 0 2015 122 17 7 chr4 149775398 149775686 -52552661 - AluSq SINE Alu -21 292 2 198 337 33 22 chr4 149775927 149776019 -52552328 - L2 LINE L2 -58 3214 3122 5050 76 9 6 chr4 149776186 149776887 -52551460 - L1PB1 LINE L1 0 6151 5449 1077 278 86 38 chr4 149777205 149777819 -52550528 + L2 LINE L2 2406 3313 0 1699 164 0 53 chr4 149777869 149778192 -52550155 - AluJo SINE Alu -6 306 1 360 146 0 0 chr4 149778301 149778356 -52549991 + AluSg SINE Alu 61 115 -185 444 19 0 0 chr4 149778356 149778409 -52549938 + (CA)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr4 149778623 149778645 -52549702 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr4 149779434 149779463 -52548884 + AT_rich Low_complexity Low_complexity 1 29 0 1011 118 0 0 chr4 149779770 149779922 -52548425 - L1PA10 LINE L1 -1 6167 6016 2130 135 8 34 chr4 149780132 149780518 -52547829 + MLT1B LTR MaLR 1 376 -14 895 253 19 8 chr4 149780816 149781073 -52547274 + MIR SINE MIR 1 260 -2 1706 201 32 53 chr4 149781970 149782019 -52546328 - MER49 LTR ERV1 -1 922 873 2053 114 3 48 chr4 149782019 149782334 -52546013 - AluSx SINE Alu -11 301 1 1706 201 32 53 chr4 149782334 149782928 -52545419 - MER49 LTR ERV1 -50 873 96 751 178 20 20 chr4 149783030 149783176 -52545171 - MER72 LTR ERV1 -576 146 1 1097 164 0 0 chr4 149783219 149783390 -52544957 - FRAM SINE Alu -13 163 1 25 0 0 0 chr4 149783501 149783526 -52544821 + AT_rich Low_complexity Low_complexity 1 25 0 1825 151 7 49 chr4 149783531 149783835 -52544512 + AluSx SINE Alu 1 291 -21 235 174 0 0 chr4 149783923 149783969 -52544378 - MLT1L LTR MaLR -7 608 563 198 259 0 37 chr4 149784741 149784795 -52543552 - MIR SINE MIR -76 132 81 2204 127 3 0 chr4 149784931 149785238 -52543109 + AluSg SINE Alu 1 308 -2 1314 205 17 62 chr4 149786069 149786425 -52541922 - MER58B DNA MER1_type 0 341 2 1938 161 6 3 chr4 149786449 149786760 -52541587 - AluJb SINE Alu 0 312 1 653 196 119 12 chr4 149786923 149787091 -52541256 + MER5A DNA MER1_type 3 188 -1 2527 137 41 12 chr4 149787450 149787866 -52540481 + MSTA LTR MaLR 1 428 0 8410 183 22 6 chr4 149787866 149789433 -52538914 + MSTA-int LTR MaLR 1 1592 -59 * 22374 111 7 16 chr4 149789425 149795456 -52532891 + L1P3 LINE L1 6 6052 -417 333 82 0 0 chr4 149795725 149795774 -52532573 + (GA)n Simple_repeat Simple_repeat 1 49 0 388 282 18 64 chr4 149796437 149796657 -52531690 - MLT1H LTR MaLR -231 318 109 2422 81 0 3 chr4 149797020 149797327 -52531020 + AluSq SINE Alu 2 307 -6 423 316 124 0 chr4 149797676 149797853 -52530494 - MIR SINE MIR -40 222 24 554 286 133 54 chr4 149798319 149798784 -52529563 + MLT1J LTR MaLR 1 502 -9 248 217 143 47 chr4 149799396 149799527 -52528820 + MIR SINE MIR 3 123 -85 * 428 215 33 145 chr4 149799516 149799758 -52528589 - L2 LINE L2 -5 3308 3094 1070 219 14 76 chr4 149799971 149800166 -52528181 - MLT1A2 LTR MaLR -32 342 177 1947 138 0 43 chr4 149800166 149800471 -52527876 - AluJb SINE Alu -18 294 3 1070 219 14 76 chr4 149800471 149800631 -52527716 - MLT1A2 LTR MaLR -197 177 9 1483 183 7 59 chr4 149801209 149801515 -52526832 + AluJo SINE Alu 1 290 -22 228 67 0 0 chr4 149801748 149801778 -52526569 + (TC)n Simple_repeat Simple_repeat 1 30 0 212 83 0 28 chr4 149802505 149802541 -52525806 + (TG)n Simple_repeat Simple_repeat 1 35 0 357 297 94 16 chr4 149803146 149803274 -52525073 + L2 LINE L2 2940 3077 -195 255 266 89 16 chr4 149804310 149804434 -52523913 - MLT1L LTR MaLR -8 607 475 7892 18 0 0 chr4 149806317 149807274 -52521073 + L1P LINE L1 3853 4809 -1337 1010 180 0 53 chr4 149807566 149807772 -52520575 + MLT1E1 LTR MaLR 1 195 -459 259 62 0 42 chr4 149807787 149807835 -52520512 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 28150 121 18 55 chr4 149807952 149809228 -52519119 - L1PA8 LINE L1 -55 6117 4796 288 0 0 0 chr4 149809228 149809260 -52519087 + (TG)n Simple_repeat Simple_repeat 1 32 0 28150 121 18 55 chr4 149809260 149810758 -52517589 - L1PA8 LINE L1 -1376 4796 3245 2286 89 3 19 chr4 149810758 149811073 -52517274 - AluY SINE Alu -1 310 1 28150 121 18 55 chr4 149811073 149814649 -52513698 - L1PA8 LINE L1 -2927 3245 12 1056 208 147 86 chr4 149814656 149815064 -52513283 + MLT1E1 LTR MaLR 178 610 -44 211 171 0 0 chr4 149815096 149815137 -52513210 - L2 LINE L2 0 3313 3273 376 250 143 36 chr4 149816748 149817000 -52511347 - L2 LINE L2 -67 3246 2968 1575 298 12 24 chr4 149817111 149817647 -52510700 + L2 LINE L2 2780 3311 -2 515 257 37 0 chr4 149817856 149817965 -52510382 - L2 LINE L2 -9 3304 3192 844 202 151 18 chr4 149819166 149819384 -52508963 + MIR SINE MIR 16 262 0 180 0 0 0 chr4 149819486 149819506 -52508841 + (CA)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr4 149821518 149821547 -52506800 + AT_rich Low_complexity Low_complexity 1 29 0 2430 100 0 0 chr4 149821973 149822283 -52506064 + AluY SINE Alu 1 310 -1 216 268 0 18 chr4 149822294 149822350 -52505997 + L2 LINE L2 3217 3271 -1 2008 57 7 0 chr4 149822513 149822796 -52505551 + L1P LINE L1 3253 3537 -2609 323 115 0 0 chr4 149822896 149822948 -52505399 - Alu SINE Alu -256 52 1 214 361 165 0 chr4 149823069 149823166 -52505181 - L2 LINE L2 0 3272 3160 2884 216 75 8 chr4 149823464 149824444 -52503903 + L1ME1 LINE L1 5097 6148 -18 21 0 0 0 chr4 149824664 149824685 -52503662 + AT_rich Low_complexity Low_complexity 1 21 0 1429 206 17 20 chr4 149824698 149824999 -52503348 - MLT1A1 LTR MaLR -11 354 55 312 111 0 0 chr4 149825023 149825068 -52503279 - MLT1A1 LTR MaLR -266 99 55 1086 170 0 64 chr4 149825101 149825319 -52503028 - MLT1A1 LTR MaLR -161 204 1 296 233 0 0 chr4 149825559 149825619 -52502728 - MLT1K LTR MaLR -2 586 527 229 200 0 0 chr4 149825814 149825864 -52502483 - L1M3 LINE L1 -337 5831 5782 192 40 0 0 chr4 149825877 149825902 -52502445 + (CA)n Simple_repeat Simple_repeat 2 26 0 1072 264 79 24 chr4 149826399 149826857 -52501490 - L1ME3A LINE L1 -5 6165 5683 2493 82 0 0 chr4 149826860 149827163 -52501184 - AluSq SINE Alu -10 303 1 5606 201 40 26 chr4 149827164 149827899 -52500448 - L1PBa LINE L1 -4133 2730 2007 1832 137 22 26 chr4 149827899 149828212 -52500135 + AluSx SINE Alu 1 312 0 5606 201 40 26 chr4 149828212 149830891 -52497456 - L1PBa LINE L1 -4856 2007 207 1481 313 93 29 chr4 149832287 149833024 -52495323 + L2 LINE L2 2219 3000 -313 218 304 0 0 chr4 149833157 149833203 -52495144 + L2 LINE L2 3172 3217 -55 447 19 0 0 chr4 149833730 149833782 -52494565 + (TG)n Simple_repeat Simple_repeat 2 53 0 276 332 27 9 chr4 149834015 149834235 -52494112 - L1ME3A LINE L1 -495 5675 5452 542 270 95 40 chr4 149834239 149834742 -52493605 - L1ME3A LINE L1 -878 5268 4738 21 36 0 0 chr4 149834967 149834995 -52493352 + AT_rich Low_complexity Low_complexity 1 28 0 1034 292 110 3 chr4 149835149 149835539 -52492808 + LTR16A LTR ERVL 19 450 0 1106 273 43 41 chr4 149835539 149836023 -52492324 + HERV16 LTR ERVL 1 485 -4511 205 328 0 0 chr4 149838735 149838802 -52489545 + T-rich Low_complexity Low_complexity 2 68 0 326 333 44 35 chr4 149838837 149838951 -52489396 - L2 LINE L2 -9 3263 3149 21 0 0 0 chr4 149840287 149840308 -52488039 + AT_rich Low_complexity Low_complexity 1 21 0 290 261 17 59 chr4 149841066 149841185 -52487162 - MER103 DNA DNA -14 152 39 3973 55 0 14 chr4 149842842 149843356 -52484991 - L1PA4 LINE L1 0 6155 5649 216 247 0 59 chr4 149843404 149843489 -52484858 + (CACCC)n Simple_repeat Simple_repeat 2 81 0 366 22 0 0 chr4 149843622 149843667 -52484680 - L1PA4 LINE L1 -474 5681 5637 405 322 47 29 chr4 149847009 149847180 -52481167 - MER5B DNA MER1_type -1 177 4 22 35 0 0 chr4 149847388 149847417 -52480930 + AT_rich Low_complexity Low_complexity 1 29 0 216 242 48 0 chr4 149847437 149847499 -52480848 + (CATA)n Simple_repeat Simple_repeat 4 68 0 420 323 13 13 chr4 149847895 149848050 -52480297 - MIR3 SINE MIR -31 177 23 204 386 100 17 chr4 149848320 149848561 -52479786 + L2 LINE L2 2946 3206 -66 21 57 0 0 chr4 149848790 149848825 -52479522 + AT_rich Low_complexity Low_complexity 1 35 0 211 254 0 0 chr4 149850146 149850201 -52478146 + GA-rich Low_complexity Low_complexity 2 56 0 1895 315 67 40 chr4 149851173 149853013 -52475334 + ERVL LTR ERVL 101 2075 -2921 1060 259 101 49 chr4 149853020 149853713 -52474634 + ERVL LTR ERVL 2199 2977 -2019 1033 337 51 39 chr4 149854085 149854495 -52473852 + ERVL LTR ERVL 4362 4766 -998 1827 188 88 9 chr4 149854495 149854926 -52473421 + MLT1C LTR MaLR 1 465 -2 1033 337 51 39 chr4 149854926 149855424 -52472923 + ERVL LTR ERVL 4766 5281 -483 2116 136 0 0 chr4 149855969 149856271 -52472076 - AluSx SINE Alu -10 302 1 217 226 183 21 chr4 149856534 149856627 -52471720 - MIR SINE MIR 0 262 155 1968 125 28 3 chr4 149857323 149857611 -52470736 + AluSx SINE Alu 1 295 -17 268 309 91 9 chr4 149858137 149858247 -52470100 + MIR SINE MIR 112 230 -32 493 144 272 0 chr4 149858552 149858567 -52469780 - L1MA10 LINE L1 -1 6333 6319 2054 216 147 33 chr4 149858567 149859206 -52469141 - L1ME1 LINE L1 -7 6228 5517 1952 221 22 67 chr4 149859199 149859920 -52468427 - L1ME1 LINE L1 -3674 2541 1886 * 863 298 8 30 chr4 149859948 149860213 -52468134 - L1ME1 LINE L1 -6090 306 48 453 146 68 0 chr4 149861063 149861166 -52467181 + L1MA9 LINE L1 6198 6307 -5 1580 214 82 51 chr4 149861184 149861309 -52467038 + MLT1D LTR MaLR 1 121 -384 2636 83 11 0 chr4 149861309 149861657 -52466690 + THE1A LTR MaLR 1 352 -3 1580 214 82 51 chr4 149861657 149862021 -52466326 + MLT1D LTR MaLR 121 505 0 907 193 0 2 chr4 149864384 149864612 -52463735 + AluJb SINE Alu 11 283 -29 621 325 47 20 chr4 149865321 149865619 -52462728 + L2 LINE L2 1818 2123 -1191 4178 229 18 34 chr4 149865700 149866008 -52462339 - L1 LINE L1 -2549 3597 3286 438 202 0 0 chr4 149866008 149866092 -52462255 - AluJ/FLAM SINE Alu -228 84 1 4178 229 18 34 chr4 149866092 149867145 -52461202 - L1 LINE L1 -2860 3286 2249 1393 76 0 0 chr4 149867145 149867317 -52461030 + AluY SINE Alu 1 172 -139 1713 203 53 3 chr4 149867678 149868018 -52460329 + MLT1A1 LTR MaLR 1 357 -8 27 49 0 0 chr4 149868532 149868573 -52459774 + AT_rich Low_complexity Low_complexity 1 41 0 224 98 0 24 chr4 149868915 149868956 -52459391 + (TA)n Simple_repeat Simple_repeat 1 40 0 196 328 17 34 chr4 149870198 149870317 -52458030 + L2 LINE L2 2671 2787 -527 21 0 0 0 chr4 149870593 149870614 -52457733 + AT_rich Low_complexity Low_complexity 1 21 0 2146 130 3 0 chr4 149871996 149872297 -52456050 + AluSq SINE Alu 1 302 -11 2077 229 40 54 chr4 149872443 149872534 -52455813 + MLT1E2 LTR MaLR 4 95 -531 2346 188 36 46 chr4 149872534 149873094 -52455253 - MLT2B3 LTR ERVL 0 554 1 2077 229 40 54 chr4 149873094 149873634 -52454713 + MLT1E2 LTR MaLR 95 626 0 293 235 15 0 chr4 149873727 149873795 -52454552 - LTR33A LTR ERVL -2 521 453 250 289 36 24 chr4 149874017 149874100 -52454247 - MLT2E LTR ERVL -480 148 65 212 167 0 0 chr4 149874215 149874251 -52454096 + A-rich Low_complexity Low_complexity 4 39 0 207 315 128 27 chr4 149874393 149874542 -52453805 - MIR3 SINE MIR -5 203 40 1021 252 29 39 chr4 149874566 149875014 -52453333 - LTR40c LTR ERVL 0 519 37 402 299 75 25 chr4 149875170 149875411 -52452936 - L1ME2 LINE L1 -298 5866 5614 335 205 14 40 chr4 149875400 149875549 -52452798 - L1ME2 LINE L1 -762 5384 5264 * 438 173 0 0 chr4 149875640 149875715 -52452632 + FLAM_A SINE Alu 58 132 -10 413 280 43 5 chr4 149875726 149875912 -52452435 + L1M4 LINE L1 4025 4217 -1929 531 293 19 29 chr4 149876007 149876212 -52452135 - L1MEd LINE L1 -5390 729 527 445 250 37 43 chr4 149876567 149876731 -52451616 + MLT1J LTR MaLR 1 163 -348 399 261 0 0 chr4 149878107 149878195 -52450152 - MIR SINE MIR -21 241 154 373 332 20 100 chr4 149878317 149878567 -52449780 - L1MEd LINE L1 -5615 504 275 1680 148 185 43 chr4 149878570 149878780 -52449567 - MSTA LTR MaLR 0 428 249 2139 125 0 3 chr4 149878780 149879076 -52449271 - AluSx SINE Alu -17 295 1 1680 148 185 43 chr4 149879076 149879238 -52449109 - MSTA LTR MaLR -179 249 3 4634 128 95 130 chr4 149879238 149880819 -52447528 + pTR5 LTR ERV1 743 2438 0 242 310 63 44 chr4 149881157 149881315 -52447032 - L2 LINE L2 -808 2506 2346 1337 172 38 0 chr4 149881685 149881946 -52446401 + AluSx SINE Alu 28 298 -14 250 352 39 23 chr4 149882022 149882150 -52446197 - L3 LINE CR1 -6 1571 1442 293 293 156 18 chr4 149882189 149882356 -52445991 - L3 LINE CR1 -301 1276 1087 239 366 46 41 chr4 149882492 149882686 -52445661 + L2 LINE L2 2954 3148 -124 330 359 8 0 chr4 149883063 149883180 -52445167 + L2 LINE L2 3192 3309 -4 320 262 14 110 chr4 149883591 149883736 -52444611 - MIR SINE MIR -60 148 18 289 134 0 60 chr4 149885052 149885119 -52443228 + LTR22 LTR ERVK 1 63 -517 23095 150 32 14 chr4 149885281 149892791 -52435556 + L1MA3 LINE L1 9 7669 -55 2201 112 0 0 chr4 149892791 149893087 -52435260 + AluSx SINE Alu 1 296 -16 23095 150 32 14 chr4 149893087 149893117 -52435230 + L1MA3 LINE L1 7669 7697 -27 584 222 0 6 chr4 149893119 149893290 -52435057 + (TA)n Simple_repeat Simple_repeat 2 171 0 21 57 0 0 chr4 149893294 149893329 -52435018 + AT_rich Low_complexity Low_complexity 1 35 0 767 151 132 49 chr4 149893886 149894091 -52434256 - MER31A LTR ERV1 0 485 264 389 165 0 155 chr4 149894091 149894194 -52434153 - MER31B LTR ERV1 -379 87 1 237 325 154 18 chr4 149894354 149894523 -52433824 + L2 LINE L2 2561 2752 -562 341 376 28 35 chr4 149894676 149894931 -52433416 + L2 LINE L2 2804 3056 -216 1347 72 0 0 chr4 149895688 149895855 -52432492 - AluY SINE Alu -13 298 132 842 263 88 35 chr4 149895938 149896428 -52431919 - L1MC5 LINE L1 -430 7531 7016 9062 27 0 20 chr4 149896447 149898337 -52430010 - L1PA3 LINE L1 -3 6152 4286 9856 33 4 0 chr4 149898337 149899595 -52428752 + L1PA3 LINE L1 3012 4274 -1872 1025 206 42 94 chr4 149899594 149899997 -52428350 - L1MC5 LINE L1 -930 7031 6650 * 372 314 148 5 chr4 149900694 149900917 -52427430 - MIR SINE MIR -2 260 6 695 161 0 0 chr4 149901219 149901337 -52427010 + L1PA16 LINE L1 6046 6163 -3 468 329 182 24 chr4 149901706 149902244 -52426103 + L2 LINE L2 1324 1946 -1368 236 257 28 46 chr4 149902244 149902353 -52425994 - MLT1J2 LTR MaLR 0 450 344 449 294 32 13 chr4 149902395 149902697 -52425650 - MLT1G3 LTR MaLR 0 595 186 268 268 36 45 chr4 149902800 149902912 -52425435 + L2 LINE L2 1936 2046 -1268 438 333 159 30 chr4 149902972 149903405 -52424942 + L2 LINE L2 2825 3313 0 342 0 0 0 chr4 149903510 149903548 -52424799 + (TG)n Simple_repeat Simple_repeat 1 38 0 1546 173 77 9 chr4 149904231 149904567 -52423780 - MLT1F LTR MaLR -7 535 177 2118 178 106 11 chr4 149904835 149905296 -52423051 + MLT1D LTR MaLR 1 505 0 2981 176 19 19 chr4 149905537 149906117 -52422230 - LTR22 LTR ERVK 0 580 1 695 319 93 24 chr4 149906278 149906729 -52421618 + MLT1K LTR MaLR 85 566 -22 2550 230 29 20 chr4 149906874 149907521 -52420826 - MER82 DNA MER2_type 0 653 1 841 340 91 20 chr4 149907960 149908410 -52419937 - L3 LINE CR1 -17 1560 1079 21 0 0 0 chr4 149908659 149908680 -52419667 + AT_rich Low_complexity Low_complexity 1 21 0 10008 178 91 14 chr4 149909273 149912996 -52415351 - L1MA4A LINE L1 -5 7000 2699 1841 158 4 0 chr4 149912996 149913327 -52415020 + AluSg SINE Alu 3 334 0 10008 178 91 14 chr4 149913327 149915065 -52413282 - L1MA4A LINE L1 -4306 2699 1095 307 288 0 0 chr4 149915473 149915553 -52412794 + MLT1I LTR MaLR 64 143 -266 227 239 0 45 chr4 149915738 149915826 -52412521 + MLT1I LTR MaLR 324 407 -2 2480 52 7 3 chr4 149916197 149916503 -52411844 + AluY SINE Alu 1 307 -4 264 324 0 0 chr4 149918173 149918241 -52410106 - MIR3 SINE MIR -28 180 113 963 298 73 24 chr4 149918491 149919113 -52409234 - L2 LINE L2 0 3313 2665 22 35 0 0 chr4 149919415 149919444 -52408903 + AT_rich Low_complexity Low_complexity 1 29 0 231 284 58 19 chr4 149919653 149919808 -52408539 - L1ME LINE L1 -225 5896 5736 382 295 50 55 chr4 149919809 149920009 -52408338 - L1ME LINE L1 -433 5688 5490 296 237 175 0 chr4 149920247 149920344 -52408003 + L2 LINE L2 3182 3295 -18 25 31 0 0 chr4 149920365 149920397 -52407950 + AT_rich Low_complexity Low_complexity 1 32 0 255 61 0 0 chr4 149920533 149920566 -52407781 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 684 115 0 10 chr4 149921003 149921107 -52407240 - U13 snRNA snRNA -1 103 1 1916 169 0 6 chr4 149921394 149921707 -52406640 - AluSx SINE Alu -1 311 1 22 0 0 0 chr4 149922548 149922570 -52405777 + AT_rich Low_complexity Low_complexity 1 22 0 269 331 92 0 chr4 149922693 149922814 -52405533 - MIR SINE MIR -62 146 37 667 132 279 7 chr4 149922915 149923051 -52405296 - MER5A DNA MER1_type 0 189 17 2156 88 25 0 chr4 149923664 149923949 -52404398 + AluY SINE Alu 1 292 -19 1893 173 0 10 chr4 149925213 149925508 -52402839 - AluJb SINE Alu -17 295 4 1826 147 44 3 chr4 149925784 149926077 -52402270 - AluSx SINE Alu -7 305 1 265 255 43 11 chr4 149926524 149926618 -52401729 - MER69 DNA AcHobo -49 2477 2381 357 263 9 18 chr4 149927033 149927147 -52401200 - MSTC LTR MaLR -68 297 185 2122 123 16 7 chr4 149927233 149927543 -52400804 - AluSq SINE Alu 0 313 1 652 164 52 13 chr4 149927545 149927695 -52400652 - MSTC LTR MaLR -206 159 1 929 292 226 3 chr4 149927986 149928590 -52399757 - L2 LINE L2 0 3313 2540 379 286 50 66 chr4 149928685 149928867 -52399480 + MER5A DNA MER1_type 2 180 -9 421 335 58 71 chr4 149929577 149929646 -52398701 - L1ME4a LINE L1 -224 5897 5829 1857 172 3 0 chr4 149929646 149929942 -52398405 - AluJb SINE Alu -15 297 1 421 335 58 71 chr4 149929942 149930323 -52398024 - L1ME4a LINE L1 -292 5829 5453 540 274 71 14 chr4 149931316 149931640 -52396707 - L1MC4a LINE L1 -313 5808 5560 1601 58 5 0 chr4 149931656 149931862 -52396485 - L1PA5 LINE L1 0 6154 5948 689 281 12 6 chr4 149933328 149933492 -52394855 + MER5B DNA MER1_type 7 171 -7 21 36 0 0 chr4 149933542 149933570 -52394777 + AT_rich Low_complexity Low_complexity 1 28 0 1575 204 80 3 chr4 149933881 149934316 -52394031 - MLT2B1 LTR ERVL 0 515 1 296 256 150 23 chr4 149934504 149934637 -52393710 + MER5A DNA MER1_type 16 165 -24 537 157 11 0 chr4 149935019 149935108 -52393239 - FLAM_C SINE Alu -19 124 35 430 312 90 5 chr4 149935234 149935423 -52392924 + MIR SINE MIR 2 206 -56 317 216 171 0 chr4 149935734 149935822 -52392525 - MER94 DNA DNA -31 103 1 2152 278 90 60 chr4 149936465 149937438 -52390909 + L2 LINE L2 2132 3163 -150 258 192 0 0 chr4 149937442 149937494 -52390853 + (CA)n Simple_repeat Simple_repeat 2 53 0 364 238 33 105 chr4 149937494 149937675 -52390672 + L2 LINE L2 3146 3313 0 1273 202 62 28 chr4 149938251 149938573 -52389774 - MER58B DNA MER1_type -4 337 5 189 285 109 20 chr4 149939233 149939407 -52388940 - MIR SINE MIR -10 252 32 279 302 60 26 chr4 149941487 149941603 -52386744 + MIR SINE MIR 32 151 -57 27 29 0 0 chr4 149941748 149941782 -52386565 + AT_rich Low_complexity Low_complexity 1 34 0 180 333 0 14 chr4 149942825 149942897 -52385450 - MIR3 SINE MIR -5 203 133 794 284 111 26 chr4 149943080 149943468 -52384879 + LTR33 LTR ERVL 93 513 -8 682 248 0 64 chr4 149944447 149944561 -52383786 - MIR SINE MIR -7 255 135 2096 142 14 8 chr4 149944561 149944914 -52383433 - THE1A LTR MaLR 0 355 1 1854 180 110 19 chr4 149944919 149945347 -52383000 - MLT1C LTR MaLR 0 467 1 682 248 0 64 chr4 149945347 149945428 -52382919 - MIR SINE MIR -131 131 67 1851 180 0 3 chr4 149945857 149946146 -52382201 + AluJb SINE Alu 1 288 -24 238 323 0 0 chr4 149946911 149946973 -52381374 + L3 LINE CR1 1512 1573 -4 * 272 333 10 0 chr4 149946971 149947067 -52381280 - MIR SINE MIR -64 144 48 21 57 0 0 chr4 149948729 149948764 -52379583 + AT_rich Low_complexity Low_complexity 1 35 0 237 267 0 44 chr4 149949150 149949240 -52379107 - MLT1C LTR MaLR -118 431 346 232 306 0 0 chr4 149949517 149949589 -52378758 - L1MC/D LINE L1 -2215 5593 5522 687 249 85 48 chr4 149949740 149950094 -52378253 - HAL1b LINE L1 -567 781 415 396 248 71 61 chr4 149950115 149950192 -52378155 - L2 LINE L2 -1 3312 3237 339 96 0 0 chr4 149950192 149950244 -52378103 + (CA)n Simple_repeat Simple_repeat 1 52 0 396 248 71 61 chr4 149950244 149950364 -52377983 - L2 LINE L2 -76 3237 3113 493 252 68 118 chr4 149950368 149950733 -52377614 - MLT1C LTR MaLR -38 429 6 182 176 165 77 chr4 149951698 149951789 -52376558 - MER5A DNA MER1_type -49 140 42 21 0 0 0 chr4 149953608 149953629 -52374718 + AT_rich Low_complexity Low_complexity 1 21 0 365 288 51 40 chr4 149953727 149953843 -52374504 - MIR SINE MIR 0 262 142 484 104 13 0 chr4 149953843 149953920 -52374427 - MER116 DNA Mariner -2 78 1 365 288 51 40 chr4 149953920 149953980 -52374367 - MIR SINE MIR -120 142 84 204 319 69 56 chr4 149954038 149954182 -52374165 + MIR SINE MIR 63 208 -54 224 284 108 0 chr4 149954830 149954904 -52373443 - L2 LINE L2 -36 3236 3155 4252 113 232 132 chr4 149955442 149956984 -52371363 - pTR5 LTR ERV1 0 2438 743 941 169 5 5 chr4 149958108 149958297 -52370050 + MER53 DNA DNA 1 189 0 5309 118 21 3 chr4 149958400 149959261 -52369086 + LOR1a-int LTR ERV1 419 1294 -6826 16453 99 29 34 chr4 149959362 149962223 -52366124 + LOR1a-int LTR ERV1 1502 4348 -3772 842 100 7 43 chr4 149962222 149962362 -52365985 + LOR1a-int LTR ERV1 5930 6064 -2056 * 415 160 11 43 chr4 149962361 149962455 -52365892 + LOR1a-int LTR ERV1 8030 8120 0 * 3072 121 37 16 chr4 149962455 149962942 -52365405 + LOR1a LTR ERV1 1 497 0 205 300 0 0 chr4 149963058 149963108 -52365239 + MER5B DNA MER1_type 5 54 -124 284 244 178 0 chr4 149963265 149963355 -52364992 - MER5B DNA MER1_type -72 106 1 322 317 24 16 chr4 149964334 149964457 -52363890 + MER5C DNA MER1_type 1 124 -200 275 291 70 0 chr4 149964483 149964569 -52363778 + MER5C DNA MER1_type 233 324 0 4375 187 19 1 chr4 149964951 149965926 -52362421 + L1MB2 LINE L1 5176 6171 0 783 230 102 13 chr4 149965959 149966185 -52362162 + AluJb SINE Alu 62 307 -5 411 133 10 31 chr4 149966185 149966283 -52362064 + GA-rich Low_complexity Low_complexity 1 96 0 31 76 0 0 chr4 149967705 149967771 -52360576 + AT_rich Low_complexity Low_complexity 1 66 0 680 186 116 14 chr4 149968030 149968235 -52360112 + MLT1B LTR MaLR 1 214 -160 1132 255 92 29 chr4 149970053 149970748 -52357599 + HAL1 LINE L1 743 1481 -1026 1048 286 44 10 chr4 149970755 149971139 -52357208 + HAL1 LINE L1 1532 1928 -579 806 266 62 33 chr4 149971339 149971644 -52356703 + MLT1J2 LTR MaLR 4 317 -133 1429 230 72 66 chr4 149972903 149973434 -52354913 - MER21B LTR ERV1 -60 803 270 619 274 30 0 chr4 149973461 149973625 -52354722 - MER21B LTR ERV1 -682 181 13 2028 91 29 7 chr4 149974455 149974764 -52353583 - AluSx SINE Alu 0 315 1 222 266 172 39 chr4 149974820 149974948 -52353399 + L2 LINE L2 3169 3313 0 276 265 83 68 chr4 149975035 149975167 -52353180 + L2 LINE L2 3138 3271 -1 207 139 0 0 chr4 149977446 149977482 -52350865 + (CA)n Simple_repeat Simple_repeat 2 37 0 5818 117 114 39 chr4 149977917 149978315 -52350032 - Tigger3b DNA MER2_type -1800 1228 861 2190 102 3 3 chr4 149978315 149978609 -52349738 - AluSx SINE Alu -18 294 1 5818 117 114 39 chr4 149978609 149979353 -52348994 - Tigger3b DNA MER2_type -2167 861 1 1083 248 94 78 chr4 149979393 149979933 -52348414 - MLT1H LTR MaLR 0 549 1 260 219 73 49 chr4 149981188 149981270 -52347077 - MIR3 SINE MIR -49 159 76 2000 116 11 0 chr4 149981521 149981963 -52346384 - AluSc SINE Alu 0 445 1 232 261 0 29 chr4 149982702 149982771 -52345576 - L1MC5 LINE L1 -576 7385 7319 5292 115 144 13 chr4 149982811 149983801 -52344546 - L1P LINE L1 -2008 4138 3019 6478 65 6 12 chr4 149983801 149985298 -52343049 + L1PA8A LINE L1 4639 6130 -1 305 211 200 0 chr4 149985366 149985461 -52342886 + MER58A DNA MER1_type 1 114 0 38941 69 5 3 chr4 149985561 149989298 -52339049 - L1P2 LINE L1 -561 5593 1843 2685 42 0 0 chr4 149989298 149989606 -52338741 + AluY SINE Alu 1 308 -3 38941 69 5 3 chr4 149989606 149991452 -52336895 - L1P2 LINE L1 -4311 1843 1 287 150 117 0 chr4 149991457 149991517 -52336830 + MER97c DNA MER1_type? 112 178 -912 826 343 58 22 chr4 149992273 149992690 -52335657 + LTR16C LTR ERVL 1 432 -59 516 252 13 20 chr4 149992791 149992942 -52335405 + MIR SINE MIR 81 230 -32 22 0 0 0 chr4 149992953 149992975 -52335372 + AT_rich Low_complexity Low_complexity 1 22 0 5195 113 13 0 chr4 149994265 149994562 -52333785 - L1PA16 LINE L1 -18 6148 5856 2241 112 0 3 chr4 149994562 149994856 -52333491 - AluSg SINE Alu -11 299 7 5195 113 13 0 chr4 149994856 149995596 -52332751 - L1PA16 LINE L1 -310 5856 5089 3802 203 15 14 chr4 149995646 149996596 -52331751 - L1 LINE L1 -1059 5087 4137 * 4827 228 43 16 chr4 149996594 149998549 -52329798 - L1PBb LINE L1 -3310 3539 1428 1013 231 3 59 chr4 149998918 149999225 -52329122 - L1PBb LINE L1 -6116 733 444 325 371 29 0 chr4 149999246 149999351 -52328996 - L1M2 LINE L1 -6063 786 679 41897 41 2 2 chr4 150000375 150006519 -52321828 + L1PA3 LINE L1 12 6152 -3 601 188 24 111 chr4 150006858 150006978 -52321369 + MER20 DNA MER1_type 26 122 -97 2073 114 0 10 chr4 150006978 150007275 -52321072 + AluSp SINE Alu 1 294 -19 601 188 24 111 chr4 150007275 150007362 -52320985 + MER20 DNA MER1_type 122 215 -4 2084 171 83 21 chr4 150007554 150007987 -52320360 + MLT1C LTR MaLR 1 460 -7 25 0 0 0 chr4 150008086 150008111 -52320236 + AT_rich Low_complexity Low_complexity 1 25 0 181 277 0 0 chr4 150008973 150009020 -52319327 + MIR SINE MIR 92 138 -124 2306 48 0 61 chr4 150009136 150009447 -52318900 - AluY SINE Alu -15 296 5 727 150 0 9 chr4 150009693 150009806 -52318541 - AluJb SINE Alu -200 112 1 201 336 160 0 chr4 150010734 150010865 -52317482 + MIR SINE MIR 95 246 -16 248 111 0 0 chr4 150010897 150010942 -52317405 - Alu SINE Alu -2 298 254 1688 254 85 58 chr4 150011130 150011756 -52316591 + L1ME LINE L1 3 659 -5411 206 32 32 0 chr4 150011756 150011787 -52316560 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1688 254 85 58 chr4 150011787 150012008 -52316339 + L1ME LINE L1 659 873 -5197 1272 237 60 33 chr4 150012240 150012670 -52315677 - MLT1D LTR MaLR -43 462 21 4328 170 111 81 chr4 150012799 150013382 -52314965 - L1MC3 LINE L1 0 7785 7221 283 175 12 50 chr4 150013382 150013462 -52314885 - MLT1F1 LTR MaLR -456 111 35 4328 170 111 81 chr4 150013462 150014102 -52314245 - L1MC3 LINE L1 -564 7221 6443 601 337 90 32 chr4 150014152 150014618 -52313729 + MLT1K LTR MaLR 79 571 -17 1798 149 0 46 chr4 150015357 150015659 -52312688 - AluSx SINE Alu -19 293 6 1907 153 17 3 chr4 150017256 150017584 -52310763 - AluSx SINE Alu 0 312 2 3158 159 37 0 chr4 150018297 150018805 -52309542 - MER1A DNA MER1_type 0 527 1 193 221 44 44 chr4 150019756 150019824 -52308523 - MER5C DNA MER1_type -1 323 256 433 203 8 78 chr4 150019917 150019976 -52308371 - MER5C DNA MER1_type -205 119 72 2406 91 0 0 chr4 150019976 150020273 -52308074 - AluSg SINE Alu -13 297 1 433 203 8 78 chr4 150020273 150020341 -52308006 - MER5C DNA MER1_type -252 72 1 27 49 0 0 chr4 150020745 150020786 -52307561 + AT_rich Low_complexity Low_complexity 1 41 0 6775 39 47 2 chr4 150021079 150022494 -52305853 - L1PA5 LINE L1 -3 6151 4740 8035 44 0 0 chr4 150022494 150023515 -52304832 + L1PA5 LINE L1 3717 4737 -1409 1018 303 31 9 chr4 150023951 150024301 -52304046 + LTR16B LTR ERVL 107 464 0 227 270 34 56 chr4 150025447 150025536 -52302811 + MIR SINE MIR 50 136 -126 253 295 220 12 chr4 150026178 150026351 -52301996 - MIR SINE MIR -8 254 46 1891 96 126 0 chr4 150028293 150028563 -52299784 - AluSx SINE Alu -8 304 1 982 183 41 41 chr4 150028819 150029038 -52299309 + MER20 DNA MER1_type 1 219 0 874 222 5 5 chr4 150030846 150031049 -52297298 - MER3 DNA MER1_type -6 203 1 1399 234 86 23 chr4 150031195 150031626 -52296721 + MLT2B2 LTR ERVL 1 458 -57 417 141 0 0 chr4 150031626 150031697 -52296650 + (TC)n Simple_repeat Simple_repeat 1 71 0 282 95 0 0 chr4 150031702 150031744 -52296603 + (TG)n Simple_repeat Simple_repeat 2 43 0 293 82 91 0 chr4 150031781 150031825 -52296522 + MLT2C1 LTR ERVL 350 515 0 263 27 0 27 chr4 150031987 150032024 -52296323 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr4 150032978 150032999 -52295348 + AT_rich Low_complexity Low_complexity 1 21 0 222 294 24 24 chr4 150033096 150033181 -52295166 + L2 LINE L2 3188 3272 0 1424 245 96 15 chr4 150033811 150034987 -52293360 - L1MC4 LINE L1 -146 7896 6470 22 0 0 0 chr4 150036429 150036451 -52291896 + AT_rich Low_complexity Low_complexity 1 22 0 439 302 68 42 chr4 150037326 150037518 -52290829 - MIR SINE MIR -18 244 48 640 237 138 93 chr4 150037650 150038122 -52290225 - MLT1H LTR MaLR -3 546 54 21 57 0 0 chr4 150039189 150039224 -52289123 + AT_rich Low_complexity Low_complexity 1 35 0 1283 96 91 41 chr4 150039605 150039824 -52288523 + MER30 DNA MER1_type 1 230 0 1856 184 71 0 chr4 150039825 150040221 -52288126 + MSTB1 LTR MaLR 9 432 0 680 313 4 9 chr4 150040223 150040450 -52287897 - ERVL-F LTR ERVL -1517 4137 3912 10366 150 32 9 chr4 150040464 150043696 -52284651 - L1MA1 LINE L1 0 7721 3539 7379 107 72 45 chr4 150043707 150044345 -52284002 - L1MA1 LINE L1 -3959 3606 2986 240 51 0 0 chr4 150044345 150044384 -52283963 - Alu SINE Alu -5 298 260 7379 107 72 45 chr4 150044384 150045176 -52283171 - L1MA1 LINE L1 -4579 2986 2099 432 168 0 32 chr4 150045176 150045271 -52283076 - ERVL-F LTR ERVL -1792 3972 3881 1807 248 75 28 chr4 150045303 150045879 -52282468 - ERVL-F LTR ERVL -1960 3804 3202 1074 136 38 61 chr4 150045879 150046092 -52282255 + MER75 DNA T2_type 1 208 -306 4293 53 13 0 chr4 150046149 150046694 -52281653 - L1PA7 LINE L1 -2 6152 5601 2018 106 10 3 chr4 150046694 150046995 -52281352 + MER75 DNA T2_type 206 508 -6 2402 226 20 4 chr4 150046997 150047745 -52280602 - ERVL-F LTR ERVL -2561 3203 2404 1323 327 34 50 chr4 150047740 150048380 -52279967 - ERVL-F LTR ERVL -4627 1137 508 * 433 219 28 86 chr4 150048707 150048892 -52279455 - ERVL-F LTR ERVL -5492 162 4 721 58 19 0 chr4 150048930 150049033 -52279314 + (TCTA)n Simple_repeat Simple_repeat 1 105 0 1564 247 40 21 chr4 150049063 150049439 -52278908 - MLT2F LTR ERVL -72 591 209 337 120 0 0 chr4 150049476 150049526 -52278821 + MLT2B2 LTR ERVL 1 50 -465 2136 178 36 80 chr4 150049545 150050018 -52278329 + MLT2B2 LTR ERVL 23 474 -41 1931 153 37 6 chr4 150050028 150050355 -52277992 + MER7A DNA MER2_type 1 335 -11 660 236 38 6 chr4 150050386 150050543 -52277804 - MLT2F LTR ERVL -501 162 1 483 231 15 8 chr4 150050553 150050683 -52277664 + L1M4 LINE L1 3877 4007 -2139 554 257 0 34 chr4 150050689 150050864 -52277483 + L1M4 LINE L1 4076 4244 -1902 721 186 0 0 chr4 150051365 150051483 -52276864 - FLAM_C SINE Alu -25 118 1 322 51 0 0 chr4 150052023 150052062 -52276285 + Tigger3(Golem) DNA MER2_type 2822 2860 -169 2976 175 74 3 chr4 150052159 150052372 -52275975 + MER6A DNA MER2_type 1 197 -668 327 113 0 0 chr4 150052372 150052425 -52275922 + (TG)n Simple_repeat Simple_repeat 1 53 0 2976 175 74 3 chr4 150052425 150052776 -52275571 + MER6A DNA MER2_type 197 605 0 284 316 41 0 chr4 150053238 150053336 -52275011 - MIR SINE MIR -1 261 160 272 336 78 23 chr4 150053433 150053561 -52274786 + LTR67 LTR ERVL 105 239 -318 22 35 0 0 chr4 150054602 150054631 -52273716 + AT_rich Low_complexity Low_complexity 1 29 0 286 318 122 94 chr4 150055329 150055642 -52272705 + L2 LINE L2 1142 1445 -1869 2561 47 3 0 chr4 150055642 150055943 -52272404 + AluY SINE Alu 2 303 -8 286 318 122 94 chr4 150055943 150056269 -52272078 + L2 LINE L2 1445 1760 -1554 1506 79 4 26 chr4 150056269 150056496 -52271851 - L1PA5 LINE L1 -5 6149 5928 286 318 122 94 chr4 150056496 150057524 -52270823 + L2 LINE L2 1760 2857 -457 209 367 33 17 chr4 150057602 150057722 -52270625 + L2 LINE L2 2933 3054 -218 2299 240 62 46 chr4 150058682 150060236 -52268111 - L1ME LINE L1 -3021 3519 1940 962 282 12 30 chr4 150060219 150060710 -52267637 - L1ME LINE L1 -5053 1477 1023 * 2387 150 36 2 chr4 150060710 150061124 -52267223 + MSTA LTR MaLR 1 428 0 962 282 12 30 chr4 150061124 150061225 -52267122 - L1ME LINE L1 -5507 1023 922 344 340 153 13 chr4 150061350 150061585 -52266762 - L1ME LINE L1 -5573 957 690 1876 144 10 26 chr4 150063225 150063531 -52264816 - AluSx SINE Alu -11 301 1 1058 294 40 35 chr4 150064489 150064917 -52263430 - LTR16B LTR ERVL -14 450 21 1633 191 0 0 chr4 150065134 150065412 -52262935 - AluSx SINE Alu -32 280 3 195 162 0 0 chr4 150065480 150065517 -52262830 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 27 49 0 0 chr4 150065578 150065619 -52262728 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr4 150067169 150067194 -52261153 + AT_rich Low_complexity Low_complexity 1 25 0 562 304 70 13 chr4 150067603 150067833 -52260514 - MIR SINE MIR -11 251 9 25 0 0 0 chr4 150067833 150067858 -52260489 + AT_rich Low_complexity Low_complexity 1 25 0 568 276 99 16 chr4 150068650 150068840 -52259507 + MIR SINE MIR 51 262 0 904 150 0 0 chr4 150069835 150069968 -52258379 + AluSq/x SINE Alu 1 133 -180 564 78 70 0 chr4 150069968 150070083 -52258264 + GA-rich Low_complexity Low_complexity 3 125 0 666 188 65 59 chr4 150070084 150070235 -52258112 + AluJb SINE Alu 131 285 -27 672 77 0 0 chr4 150070235 150070326 -52258021 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 666 188 65 59 chr4 150070326 150070344 -52258003 + AluJb SINE Alu 285 301 -11 891 285 120 25 chr4 150070346 150070995 -52257352 + L2 LINE L2 2548 3309 -4 274 276 189 31 chr4 150071169 150071397 -52256950 + L1MC/D LINE L1 5566 5829 -1979 186 231 0 0 chr4 150071398 150071463 -52256884 + (TA)n Simple_repeat Simple_repeat 1 65 0 253 212 0 45 chr4 150071567 150071633 -52256714 + T-rich Low_complexity Low_complexity 2 64 0 21 36 0 0 chr4 150071679 150071707 -52256640 + AT_rich Low_complexity Low_complexity 1 28 0 408 246 172 60 chr4 150072124 150072339 -52256008 - L2 LINE L2 0 3313 3075 533 293 100 26 chr4 150072389 150072618 -52255729 - MLT1J LTR MaLR -261 250 5 199 75 0 50 chr4 150072635 150072675 -52255672 + (GGAAA)n Simple_repeat Simple_repeat 3 40 0 61 27 0 0 chr4 150072691 150072766 -52255581 + AT_rich Low_complexity Low_complexity 1 75 0 33 43 0 0 chr4 150073008 150073055 -52255292 + AT_rich Low_complexity Low_complexity 1 47 0 384 269 74 109 chr4 150073058 150073233 -52255114 + MLT1J LTR MaLR 30 198 -313 7058 37 2 0 chr4 150073403 150074250 -52254097 + L1PA4 LINE L1 5304 6152 -3 28 0 0 0 chr4 150074250 150074278 -52254069 + AT_rich Low_complexity Low_complexity 1 28 0 276 353 27 49 chr4 150074538 150074762 -52253585 - L2 LINE L2 -131 3182 2964 1861 145 0 40 chr4 150074828 150075153 -52253194 - AluSx SINE Alu 0 312 1 24072 38 3 0 chr4 150075388 150078355 -52249992 - L1P LINE L1 -898 5248 2275 415 320 0 0 chr4 150078516 150078672 -52249675 + T-rich Low_complexity Low_complexity 1 156 0 879 203 6 28 chr4 150079108 150079290 -52249057 - FRAM SINE Alu -5 171 1 1643 198 49 14 chr4 150079359 150079703 -52248644 - MLT1A1 LTR MaLR 0 365 10 4292 194 34 9 chr4 150080223 150081583 -52246764 - L1MB1 LINE L1 0 6168 4773 255 244 0 0 chr4 150081642 150081720 -52246627 + CT-rich Low_complexity Low_complexity 4 81 0 1343 212 79 3 chr4 150082081 150082397 -52245950 + MER58B DNA MER1_type 1 340 -1 189 0 0 0 chr4 150083797 150083818 -52244529 + (TC)n Simple_repeat Simple_repeat 2 22 0 392 335 142 43 chr4 150083954 150084765 -52243582 + L2 LINE L2 1819 2709 -605 15100 55 5 16 chr4 150085752 150087704 -52240643 + L1P LINE L1 4 1932 -4214 183 80 0 0 chr4 150088695 150088720 -52239627 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 2223 206 82 4 chr4 150089672 150090137 -52238210 + MLT2B2 LTR ERVL 15 515 0 339 176 27 27 chr4 150090481 150090555 -52237792 - MER58 DNA MER1_type -2 2418 2345 290 287 0 30 chr4 150090609 150090710 -52237637 - MIR SINE MIR -55 207 110 688 283 72 72 chr4 150091788 150092286 -52236061 - HAL1 LINE L1 -2007 500 3 1525 192 3 28 chr4 150092336 150092654 -52235693 - AluJo SINE Alu 0 312 3 32 0 0 0 chr4 150092815 150092847 -52235500 + AT_rich Low_complexity Low_complexity 1 32 0 2008 120 56 0 chr4 150092964 150093248 -52235099 - AluSx SINE Alu -12 300 1 1185 257 93 58 chr4 150093331 150093661 -52234686 - L1MC5 LINE L1 -585 7376 7059 1574 193 13 46 chr4 150093661 150094034 -52234313 + MLT1A1 LTR MaLR 5 365 0 1185 257 93 58 chr4 150094034 150094576 -52233771 - L1MC5 LINE L1 -902 7059 6475 951 255 38 78 chr4 150094713 150095109 -52233238 - LTR16A1 LTR ERVL 0 457 78 5391 134 15 19 chr4 150095112 150096347 -52232000 - L1PA11 LINE L1 -588 5586 4357 3845 118 9 0 chr4 150096349 150096937 -52231410 + L1PA11 LINE L1 5598 6190 0 279 329 0 0 chr4 150096938 150097014 -52231333 - LTR16A1 LTR ERVL -375 82 7 719 144 0 0 chr4 150097202 150097320 -52231027 - L1MA6 LINE L1 -107 6193 6076 * 965 137 32 6 chr4 150097306 150097485 -52230862 + L1MA8 LINE L1 5777 5953 -344 858 350 39 41 chr4 150097487 150098583 -52229764 - ERVL LTR ERVL -439 5325 4180 314 196 65 33 chr4 150098586 150098678 -52229669 + MER3 DNA MER1_type 110 204 -5 25 75 0 0 chr4 150099222 150099275 -52229072 + AT_rich Low_complexity Low_complexity 1 53 0 1064 256 30 68 chr4 150099344 150099691 -52228656 + L1MC4 LINE L1 6625 6986 -1024 1880 162 6 6 chr4 150099695 150100009 -52228338 - Tigger3(Golem) DNA MER2_type -5 3024 2711 795 212 0 0 chr4 150099995 150100132 -52228215 - Tigger3(Golem) DNA MER2_type -2892 137 1 * 880 209 61 79 chr4 150100132 150100454 -52227893 + L1MC5 LINE L1 6936 7262 -699 1435 161 115 10 chr4 150100454 150100551 -52227796 + MER44D DNA MER2_type 3 88 -2403 231 36 0 0 chr4 150100551 150100579 -52227768 + (GA)n Simple_repeat Simple_repeat 1 28 0 1435 161 115 10 chr4 150100579 150100684 -52227663 + MER44D DNA MER2_type 88 181 -2310 180 0 0 0 chr4 150100684 150100704 -52227643 + (TATG)n Simple_repeat Simple_repeat 2 21 0 1435 161 115 10 chr4 150100704 150100805 -52227542 + MER44D DNA MER2_type 181 609 0 880 209 61 79 chr4 150100805 150100860 -52227487 + L1MC5 LINE L1 7262 7306 -655 595 250 83 31 chr4 150101042 150101402 -52226945 + L1MC5 LINE L1 7539 7917 -44 2209 109 0 28 chr4 150102239 150102559 -52225788 + AluSq SINE Alu 3 313 0 1035 118 7 0 chr4 150104254 150104407 -52223940 - L1PA16 LINE L1 -9 6157 6004 1705 128 24 95 chr4 150104914 150105250 -52223097 + AluYb8 SINE Alu 1 312 -6 308 177 0 0 chr4 150105253 150105315 -52223032 + L1PB4 LINE L1 6094 6155 -1 437 299 91 0 chr4 150105612 150105766 -52222581 + MIR SINE MIR 89 256 -6 6622 219 61 22 chr4 150106322 150106746 -52221601 - L1MB3 LINE L1 -179 7423 7017 180 0 0 0 chr4 150106746 150106766 -52221581 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 6622 219 61 22 chr4 150106766 150108574 -52219773 - L1MB3 LINE L1 -585 7017 5108 426 215 86 25 chr4 150108546 150108709 -52219638 - L1MB3 LINE L1 -2933 4632 4460 * 2401 241 59 24 chr4 150108693 150110017 -52218330 - L1MB3 LINE L1 -3320 4245 2868 970 242 77 8 chr4 150110028 150110276 -52218071 + MER77 LTR ERV1 333 597 -8 296 308 63 63 chr4 150111525 150111668 -52216679 - MIR SINE MIR -50 212 70 4952 149 29 3 chr4 150113283 150114207 -52214140 - L1P5 LINE L1 -1080 5066 4119 1338 196 17 12 chr4 150114209 150114564 -52213783 + L1P5 LINE L1 5083 5447 -709 2468 287 77 18 chr4 150114875 150115775 -52212572 + MER45C DNA AcHobo 1 953 0 361 296 97 38 chr4 150116639 150116825 -52211522 - MLT1K LTR MaLR -355 233 37 23 92 0 0 chr4 150118162 150118227 -52210120 + AT_rich Low_complexity Low_complexity 1 65 0 219 387 80 7 chr4 150118230 150118367 -52209980 - MIR SINE MIR -111 151 5 251 211 47 39 chr4 150118563 150118691 -52209656 + L1MEd LINE L1 59 187 -5932 358 289 43 48 chr4 150118803 150118990 -52209357 + L1MEd LINE L1 652 837 -5282 23 33 0 0 chr4 150119001 150119031 -52209316 + AT_rich Low_complexity Low_complexity 1 30 0 333 250 0 88 chr4 150119144 150119189 -52209158 - L1MB8 LINE L1 -3 6175 6128 1427 206 45 24 chr4 150119189 150119481 -52208866 + AluJo SINE Alu 1 298 -14 333 250 0 88 chr4 150119481 150119571 -52208776 - L1MB8 LINE L1 -50 6128 6052 574 244 52 37 chr4 150119632 150119880 -52208467 + L1ME1 LINE L1 5925 6332 -2 246 285 31 15 chr4 150119873 150120003 -52208344 + L1MEd LINE L1 945 1076 -5043 * 1282 268 111 55 chr4 150120014 150120556 -52207791 + MLT1E LTR MaLR 22 593 0 260 269 33 130 chr4 150120559 150121051 -52207296 + L1MEd LINE L1 1084 1627 -863 1663 102 51 0 chr4 150121572 150121826 -52206521 - L1PA10 LINE L1 -11 6157 5891 2442 112 35 5 chr4 150121826 150122201 -52206146 + L1PA10 LINE L1 5476 5861 -313 1371 161 131 7 chr4 150122395 150122669 -52205678 - AluJo SINE Alu -4 308 1 259 221 29 15 chr4 150123569 150123637 -52204710 - L1M3f LINE L1 -4733 595 527 405 252 56 49 chr4 150123871 150124014 -52204333 - MIR3 SINE MIR -54 154 11 213 366 82 0 chr4 150124644 150124778 -52203569 - MIR3 SINE MIR -23 185 41 327 25 0 0 chr4 150125059 150125099 -52203248 + (CTG)n Simple_repeat Simple_repeat 3 42 0 216 329 37 0 chr4 150125175 150125257 -52203090 - MIR SINE MIR -59 203 119 1815 176 35 35 chr4 150125876 150126279 -52202068 - L1MA8 LINE L1 -3 6288 5886 396 0 0 0 chr4 150126725 150126769 -52201578 + (TG)n Simple_repeat Simple_repeat 2 45 0 29815 53 0 5 chr4 150127212 150130977 -52197370 + L1P LINE L1 1 3745 -2401 593 211 25 116 chr4 150131077 150131196 -52197151 + L1MA9 LINE L1 6025 6153 -159 2541 62 0 3 chr4 150131196 150131505 -52196842 - AluY SINE Alu -3 308 1 593 211 25 116 chr4 150131505 150131669 -52196678 + L1MA9 LINE L1 6153 6282 -30 1579 190 16 7 chr4 150131686 150131991 -52196356 + AluJo SINE Alu 3 310 -2 2166 185 65 109 chr4 150131991 150132639 -52195708 + MER45B DNA AcHobo 420 1040 0 610 228 56 4 chr4 150132882 150133113 -52195234 - L1MA8 LINE L1 0 6291 6050 249 254 0 0 chr4 150133568 150133627 -52194720 + MIR SINE MIR 96 154 -108 4577 199 42 2 chr4 150133697 150134704 -52193643 + L1 LINE L1 3404 4450 -1696 11117 134 25 13 chr4 150134713 150135531 -52192816 - Tigger1 DNA MER2_type -6 2412 1605 1494 161 25 62 chr4 150135531 150135855 -52192492 - AluJo SINE Alu 0 312 1 11117 134 25 13 chr4 150135855 150136590 -52191757 - Tigger1 DNA MER2_type -813 1605 831 1617 140 98 32 chr4 150136590 150136875 -52191472 - AluSx SINE Alu -8 304 1 11117 134 25 13 chr4 150136875 150137138 -52191209 - Tigger1 DNA MER2_type -1587 831 573 1921 168 70 32 chr4 150137416 150137856 -52190491 + MSTB2 LTR MaLR 1 457 0 765 236 80 36 chr4 150139134 150139410 -52188937 + LTR52 LTR ERVL 44 331 -90 11564 191 30 10 chr4 150139414 150139935 -52188412 - L1MA4 LINE L1 -8 6474 5965 1843 122 63 0 chr4 150139935 150140221 -52188126 - AluSx SINE Alu -8 304 1 11564 191 30 10 chr4 150140221 150142376 -52185971 - L1MA4 LINE L1 -517 5965 3710 1916 110 11 0 chr4 150142376 150142640 -52185707 - AluSc SINE Alu -13 296 30 11564 191 30 10 chr4 150142640 150143445 -52184902 - L1MA4 LINE L1 -2772 3710 2923 6378 187 48 31 chr4 150143423 150145525 -52182822 - L1MA4 LINE L1 -4065 1263 6 * 4359 68 1 176 chr4 150146922 150147305 -52181042 + LTR12 LTR ERV1 1 161 -527 2159 88 0 0 chr4 150147305 150147579 -52180768 - AluY SINE Alu -9 302 29 4359 68 1 176 chr4 150147579 150148029 -52180318 + LTR12 LTR ERV1 161 688 0 28 29 0 0 chr4 150148472 150148507 -52179840 + AT_rich Low_complexity Low_complexity 1 35 0 1208 196 106 29 chr4 150148534 150148809 -52179538 - AluJb SINE Alu -5 297 2 328 363 26 13 chr4 150149076 150149231 -52179116 - MIR3 SINE MIR -25 183 25 277 250 194 51 chr4 150149213 150149409 -52178938 + MIR SINE MIR 15 238 -24 * 222 182 23 0 chr4 150150001 150150045 -52178302 - L2 LINE L2 -13 3259 3215 1948 144 10 7 chr4 150150249 150150555 -52177792 + AluSx SINE Alu 2 308 -4 1135 177 35 107 chr4 150150630 150150947 -52177400 - MLT1C LTR MaLR -173 294 1 2603 30 0 0 chr4 150151225 150151522 -52176825 - AluY SINE Alu -14 297 1 21 36 0 0 chr4 150152410 150152438 -52175909 + AT_rich Low_complexity Low_complexity 1 28 0 1719 151 58 39 chr4 150152447 150152811 -52175536 + THE1C LTR MaLR 5 375 0 216 209 0 0 chr4 150153850 150153893 -52174454 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 25 0 0 0 chr4 150153934 150153959 -52174388 + AT_rich Low_complexity Low_complexity 1 25 0 7513 109 7 1 chr4 150153996 150155143 -52173204 - L1P LINE L1 -2508 3638 2485 776 251 12 0 chr4 150155204 150155375 -52172972 - LTR40a LTR ERVL -346 173 1 840 269 77 36 chr4 150155968 150156407 -52171940 - L1ME3A LINE L1 -193 5977 5521 441 254 152 17 chr4 150156467 150156647 -52171700 - MIR SINE MIR -21 241 39 588 281 44 28 chr4 150156658 150157192 -52171155 - L1M2 LINE L1 -710 5468 4969 2359 173 31 26 chr4 150157194 150157652 -52170695 + MLT2C2 LTR ERVL 3 462 -2 606 247 32 21 chr4 150157654 150157840 -52170507 + HERVL-C2 LTR ERVL 1 188 -5466 15827 218 54 41 chr4 150157854 150161618 -52166729 + HERVL-C2 LTR ERVL 318 4130 -1634 578 286 47 78 chr4 150161619 150162298 -52166049 - L1MEd LINE L1 -4935 1184 527 1926 179 14 8 chr4 150162626 150162989 -52165358 - MLT1A1 LTR MaLR 0 365 1 186 118 0 0 chr4 150163168 150163202 -52165145 + (TG)n Simple_repeat Simple_repeat 2 35 0 196 307 98 18 chr4 150163841 150164004 -52164343 + L3b LINE CR1 1108 1283 -300 818 245 0 0 chr4 150164024 150164179 -52164168 - MER5B DNA MER1_type -3 175 21 224 314 39 78 chr4 150164310 150164354 -52163993 + L3b LINE CR1 1296 1340 -243 2463 66 0 0 chr4 150164354 150164658 -52163689 + AluY SINE Alu 2 305 -6 224 314 39 78 chr4 150164658 150164766 -52163581 + L3b LINE CR1 1340 1442 -141 302 274 59 39 chr4 150164805 150164907 -52163440 + MIR SINE MIR 29 132 -130 291 239 45 45 chr4 150164905 150164993 -52163354 - L2 LINE L2 0 3313 3226 * 200 314 14 14 chr4 150165013 150165083 -52163264 + MIR SINE MIR 157 226 -36 24 67 0 0 chr4 150165083 150165128 -52163219 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr4 150165149 150165172 -52163175 + AT_rich Low_complexity Low_complexity 1 23 0 1501 196 46 51 chr4 150166293 150166685 -52161662 + MLT1B LTR MaLR 1 390 0 6174 41 1 1 chr4 150167109 150167859 -52160488 - L1PA4 LINE L1 -3 6152 5403 12723 29 1 1 chr4 150167909 150169443 -52158904 - L1PA4 LINE L1 -752 5394 3861 2433 186 16 22 chr4 150169543 150170033 -52158314 - Tigger1 DNA MER2_type -1930 488 2 4249 192 13 22 chr4 150170038 150171703 -52156644 + L1MB1 LINE L1 4456 6110 -58 1473 124 0 9 chr4 150171703 150171941 -52156406 - AluSc SINE Alu 0 299 64 4249 192 13 22 chr4 150171941 150171969 -52156378 + L1MB1 LINE L1 6110 6137 -31 1850 148 30 3 chr4 150171972 150172275 -52156072 + AluJb SINE Alu 1 311 -1 2580 186 58 20 chr4 150172339 150172547 -52155800 + L1MB5 LINE L1 5596 5795 -379 2420 73 23 0 chr4 150172547 150172847 -52155500 - AluY SINE Alu -4 307 1 2580 186 58 20 chr4 150172847 150173188 -52155159 + L1MB5 LINE L1 5795 6166 -8 366 23 0 0 chr4 150173854 150173897 -52154450 + (CA)n Simple_repeat Simple_repeat 1 43 0 180 387 0 0 chr4 150174407 150174469 -52153878 + L2 LINE L2 3201 3262 -10 1944 142 49 12 chr4 150174507 150174832 -52153515 - MER1B DNA MER1_type 0 337 1 363 200 95 48 chr4 150174965 150175070 -52153277 + MIR SINE MIR 132 241 -21 2134 122 7 0 chr4 150176300 150176603 -52151744 - AluSx SINE Alu -4 308 4 2035 127 3 0 chr4 150177821 150178105 -52150242 + AluSq SINE Alu 15 299 -14 2150 99 0 37 chr4 150178973 150179297 -52149050 - AluSx SINE Alu 0 312 1 25 83 0 0 chr4 150179489 150179549 -52148798 + AT_rich Low_complexity Low_complexity 1 60 0 1312 179 0 18 chr4 150179549 150179632 -52148715 - L1PB4 LINE L1 -32 6124 6042 7311 189 44 7 chr4 150179632 150181765 -52146582 - L1MA5 LINE L1 -262 6038 3805 2632 177 11 41 chr4 150181763 150182372 -52145975 + L1MA5 LINE L1 3219 3809 -2337 * 197 250 94 0 chr4 150182489 150182553 -52145794 - MIR SINE MIR -8 254 185 281 302 124 8 chr4 150182838 150182967 -52145380 + MIR SINE MIR 3 146 -116 952 291 84 29 chr4 150182967 150183417 -52144930 - LTR16C LTR ERVL 0 491 17 214 319 0 29 chr4 150183424 150183493 -52144854 + MIR SINE MIR 158 224 -38 48 43 0 0 chr4 150183588 150183657 -52144690 + AT_rich Low_complexity Low_complexity 1 69 0 22 88 0 0 chr4 150185071 150185128 -52143219 + AT_rich Low_complexity Low_complexity 1 57 0 253 391 45 11 chr4 150185934 150186113 -52142234 + L2 LINE L2 2889 3073 -199 284 64 0 43 chr4 150186131 150186178 -52142169 + MADE1 DNA Mariner 2 46 -34 398 254 85 8 chr4 150186245 150186363 -52141984 + L2 LINE L2 3141 3267 -5 265 343 0 0 chr4 150186638 150186708 -52141639 - L2 LINE L2 -677 2637 2568 294 253 13 0 chr4 150186863 150186938 -52141409 - MER116 DNA Mariner 0 80 5 967 171 99 8 chr4 150187477 150187729 -52140618 - Charlie1 DNA MER1_type -2 2759 2485 2149 92 27 0 chr4 150188036 150188330 -52140017 + AluSg SINE Alu 1 302 -8 656 208 38 31 chr4 150188342 150188496 -52139851 - Charlie1 DNA MER1_type -285 2476 2322 2601 114 65 2 chr4 150188496 150188907 -52139440 - Tigger3(Golem) DNA MER2_type -3 3026 2590 3650 136 32 7 chr4 150188907 150189508 -52138839 + LTR8A LTR ERV1 1 616 -111 1089 156 6 6 chr4 150189517 150189697 -52138650 - Tigger3(Golem) DNA MER2_type -708 2321 2142 831 210 44 17 chr4 150189691 150189872 -52138475 - Tigger3(Golem) DNA MER2_type -2843 186 1 * 3456 190 66 19 chr4 150189872 150190655 -52137692 - Charlie1 DNA MER1_type -441 2320 1501 2128 210 25 9 chr4 150190660 150191094 -52137253 + LTR53 LTR ERVL 75 515 -4 5063 223 50 25 chr4 150191098 150192446 -52135901 - Charlie1 DNA MER1_type -1378 1383 1 417 257 53 97 chr4 150192537 150193265 -52135082 + L1ME4a LINE L1 5263 5949 -172 603 207 233 0 chr4 150193392 150193542 -52134805 + MER20 DNA MER1_type 24 208 -11 201 241 169 24 chr4 150193550 150193633 -52134714 - L2 LINE L2 0 3272 3178 419 273 92 19 chr4 150193743 150194003 -52134344 + L1ME4a LINE L1 5597 5875 -246 430 255 38 13 chr4 150194052 150194209 -52134138 + L1ME4a LINE L1 5960 6120 -1 519 270 70 25 chr4 150194394 150194594 -52133753 - MIR SINE MIR -18 244 36 3170 163 2 42 chr4 150195888 150196483 -52131864 + L1MB4 LINE L1 5377 5947 -233 1600 190 27 7 chr4 150196588 150196883 -52131464 + AluJo SINE Alu 1 301 -11 768 179 0 14 chr4 150197490 150197635 -52130712 + FLAM_C SINE Alu 1 143 0 24 32 0 0 chr4 150198100 150198131 -52130216 + AT_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr4 150198657 150198702 -52129645 + AT_rich Low_complexity Low_complexity 1 45 0 474 122 27 0 chr4 150198886 150198960 -52129387 + MER63 DNA MER1_type 44 745 -91 1452 291 105 40 chr4 150199003 150199724 -52128623 + L2 LINE L2 1130 1897 -1417 490 335 86 30 chr4 150199728 150200065 -52128282 + LTR16C LTR ERVL 18 373 -118 2278 267 98 20 chr4 150200172 150200953 -52127394 + L2 LINE L2 1893 2742 -572 1893 218 98 29 chr4 150200953 150201435 -52126912 + MLT2B2 LTR ERVL 1 515 0 2278 267 98 20 chr4 150201435 150201465 -52126882 + L2 LINE L2 2742 2768 -546 404 316 98 23 chr4 150201456 150201630 -52126717 - MIR SINE MIR -71 191 5 * 201 385 8 8 chr4 150202058 150202208 -52126139 - MIR SINE MIR 0 208 59 918 252 75 12 chr4 150202427 150202749 -52125598 + L1ME LINE L1 3825 4166 -1980 468 316 13 7 chr4 150202753 150202908 -52125439 + L1ME LINE L1 5477 5632 -532 1247 49 31 9 chr4 150202908 150203152 -52125195 + (TTTC)n Simple_repeat Simple_repeat 2 428 0 1086 111 6 6 chr4 150203152 150203324 -52125023 - L1MA6 LINE L1 0 6300 6129 1037 189 5 0 chr4 150203324 150203520 -52124827 + L1PBa LINE L1 4 200 -6663 12760 116 100 11 chr4 150203520 150204706 -52123641 + L1PBa LINE L1 634 1713 -5149 4404 103 46 0 chr4 150204706 150205337 -52123010 - PABL_A LTR ERV1 0 660 1 12760 116 100 11 chr4 150205337 150206737 -52121610 + L1PBa LINE L1 1713 3442 -3420 1018 289 6 0 chr4 150206733 150207055 -52121292 + L1 LINE L1 3966 4289 -2573 * 2454 182 62 80 chr4 150207200 150208044 -52120303 + MER21A LTR ERV1 195 904 -27 188 358 0 0 chr4 150209479 150209546 -52118801 - L2 LINE L2 -694 2620 2554 585 189 7 49 chr4 150209751 150209894 -52118453 - MER58C DNA MER1_type 0 215 79 22 35 0 0 chr4 150210046 150210075 -52118272 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr4 150210158 150210195 -52118152 + AT_rich Low_complexity Low_complexity 1 37 0 218 378 87 8 chr4 150210883 150211010 -52117337 + L3 LINE CR1 1098 1234 -343 180 208 151 0 chr4 150211054 150211107 -52117240 + L3 LINE CR1 1237 1297 -280 213 205 0 0 chr4 150211108 150211147 -52117200 + (TCCA)n Simple_repeat Simple_repeat 3 41 0 222 282 58 29 chr4 150211298 150211401 -52116946 + MIR SINE MIR 117 222 -40 638 234 128 73 chr4 150211499 150212012 -52116335 - MLT1G1 LTR MaLR -6 543 1 536 366 81 36 chr4 150212839 150213224 -52115123 + L2 LINE L2 2871 3272 0 1347 102 5 0 chr4 150214495 150214682 -52113665 + AluSg/x SINE Alu 124 311 -1 1314 184 21 0 chr4 150214885 150215117 -52113230 - MLT1E2 LTR MaLR 0 626 390 4432 157 92 7 chr4 150215117 150215973 -52112374 + Tigger2 DNA MER2_type 1 929 -1789 * 9255 110 46 70 chr4 150215970 150217622 -52110725 + Tigger2 DNA MER2_type 1098 2710 -8 1165 203 169 3 chr4 150217629 150217919 -52110428 - MLT1E2 LTR MaLR -237 389 52 2295 88 7 0 chr4 150218674 150218968 -52109379 - AluSc SINE Alu -13 296 1 29 0 0 0 chr4 150221488 150221517 -52106830 + AT_rich Low_complexity Low_complexity 1 29 0 1738 86 25 8 chr4 150222783 150223053 -52105294 + AluY SINE Alu 41 314 0 2250 92 3 0 chr4 150223057 150223351 -52104996 + AluSc SINE Alu 1 295 -14 2137 122 3 3 chr4 150223356 150223668 -52104679 + AluSx SINE Alu 1 312 0 530 148 10 10 chr4 150224650 150224751 -52103596 - L1 LINE L1 -744 6821 6721 * 5239 229 49 14 chr4 150224736 150227519 -52100828 - L1 LINE L1 -2663 4902 2017 420 311 17 23 chr4 150228028 150228205 -52100142 - L1 LINE L1 -5769 1717 1542 221 175 25 0 chr4 150228900 150228940 -52099407 + MIR SINE MIR 113 153 -109 466 273 68 49 chr4 150229170 150229375 -52098972 + MLT1L LTR MaLR 258 466 -149 1094 231 89 36 chr4 150229388 150229725 -52098622 + MLT1A1 LTR MaLR 11 365 0 245 291 27 18 chr4 150229746 150229856 -52098491 + MLT1L LTR MaLR 496 606 -9 375 78 0 0 chr4 150230460 150230511 -52097836 + (CA)n Simple_repeat Simple_repeat 1 51 0 21 36 0 0 chr4 150230862 150230890 -52097457 + AT_rich Low_complexity Low_complexity 1 28 0 531 295 98 34 chr4 150230924 150231310 -52097037 + HAL1 LINE L1 1220 1630 -877 1319 233 88 64 chr4 150231318 150231924 -52096423 + MLT1E3 LTR MaLR 5 624 0 23 33 0 0 chr4 150232132 150232162 -52096185 + AT_rich Low_complexity Low_complexity 1 30 0 343 280 77 24 chr4 150232162 150232330 -52096017 - MLT1F1 LTR MaLR -5 562 386 218 388 61 0 chr4 150232635 150232733 -52095614 - L2 LINE L2 -32 3240 3137 27 0 0 0 chr4 150233484 150233511 -52094836 + AT_rich Low_complexity Low_complexity 1 27 0 216 261 31 0 chr4 150233757 150233822 -52094525 + (TA)n Simple_repeat Simple_repeat 2 68 0 239 337 12 0 chr4 150233931 150234014 -52094333 + L2 LINE L2 2893 2976 -296 191 341 114 23 chr4 150234188 150234276 -52094071 + L2 LINE L2 3168 3263 -9 346 316 56 37 chr4 150234893 150235108 -52093239 + L1MCc LINE L1 31 249 -6174 27 49 0 0 chr4 150235207 150235248 -52093099 + AT_rich Low_complexity Low_complexity 1 41 0 1670 270 74 37 chr4 150235276 150235961 -52092386 + L1M4 LINE L1 2721 3462 -2684 2117 130 7 0 chr4 150235961 150236260 -52092087 + AluSx SINE Alu 1 301 -11 1670 270 74 37 chr4 150236260 150236656 -52091691 + L1M4 LINE L1 3462 3842 -2304 1771 183 5 0 chr4 150236664 150237031 -52091316 - L1 LINE L1 -1401 4745 4377 5248 137 20 77 chr4 150237079 150238569 -52089778 + L1PB1 LINE L1 4749 6147 -4 5374 214 29 25 chr4 150238586 150238719 -52089628 - L1M4 LINE L1 -398 5780 5649 207 0 0 0 chr4 150238719 150238742 -52089605 + (TA)n Simple_repeat Simple_repeat 2 24 0 5374 214 29 25 chr4 150238742 150238768 -52089579 - L1M4 LINE L1 -529 5649 5625 1552 209 103 7 chr4 150238768 150239194 -52089153 + MLT1C LTR MaLR 1 467 0 5374 214 29 25 chr4 150239194 150240866 -52087481 - L1M4 LINE L1 -553 5625 3943 1898 200 42 16 chr4 150240861 150241310 -52087037 - L1MA9 LINE L1 -32 6280 5820 * 430 174 2 83 chr4 150241361 150241402 -52086945 + L1M LINE L1 5272 5315 -841 2130 110 7 0 chr4 150241402 150241692 -52086655 + AluSc SINE Alu 16 307 -2 430 174 2 83 chr4 150241692 150241791 -52086556 + L1M LINE L1 5315 5401 -755 * 2468 187 51 21 chr4 150241789 150242476 -52085871 - L1MC2 LINE L1 -514 6248 5540 3281 211 79 43 chr4 150242488 150242913 -52085434 - L1MC2 LINE L1 -4851 1194 786 2163 115 0 3 chr4 150242913 150243218 -52085129 + AluSc SINE Alu 1 304 -5 3281 211 79 43 chr4 150243218 150243936 -52084411 - L1MC2 LINE L1 -5259 786 208 2692 111 144 156 chr4 150243953 150245075 -52083272 - pTR5 LTR ERV1 -24 1641 6 722 205 131 18 chr4 150245208 150245411 -52082936 - L1MC2 LINE L1 -5832 361 3 887 272 56 46 chr4 150245450 150245773 -52082574 + LTR40a LTR ERVL 112 437 -82 2545 86 6 0 chr4 150245871 150246219 -52082128 - L1PB1 LINE L1 -6 6145 5796 225 0 0 0 chr4 150246221 150246246 -52082101 + (TA)n Simple_repeat Simple_repeat 2 26 0 653 121 15 0 chr4 150246379 150246495 -52081852 - L1PB1 LINE L1 -335 5819 5699 462 204 0 0 chr4 150246495 150246583 -52081764 + LTR40a LTR ERVL 432 519 0 1072 255 95 19 chr4 150246587 150246999 -52081348 + L1ME2 LINE L1 5670 6112 -52 1509 249 41 34 chr4 150247004 150247446 -52080901 - MER119 DNA MER1_type -138 445 1 586 278 94 13 chr4 150247609 150247843 -52080504 + MIR SINE MIR 8 260 -2 228 163 0 0 chr4 150248355 150248398 -52079949 + GA-rich Low_complexity Low_complexity 2 44 0 727 324 114 33 chr4 150249996 150250756 -52077591 + L1MEd LINE L1 436 1257 -4862 296 296 58 30 chr4 150250790 150251027 -52077320 + L1MEd LINE L1 1339 1639 -851 21 57 0 0 chr4 150251220 150251255 -52077092 + AT_rich Low_complexity Low_complexity 1 35 0 324 324 162 15 chr4 150251854 150252058 -52076289 - MIR SINE MIR -13 249 16 1862 161 0 16 chr4 150252695 150253005 -52075342 + AluJo SINE Alu 5 309 -3 264 287 173 16 chr4 150253119 150253373 -52074974 + L1ME LINE L1 5492 5785 -336 39 38 0 0 chr4 150253441 150253494 -52074853 + AT_rich Low_complexity Low_complexity 1 53 0 307 325 80 20 chr4 150254039 150254190 -52074157 - MIR SINE MIR -75 187 28 579 202 0 0 chr4 150254461 150254560 -52073787 - Tigger2 DNA MER2_type 0 2718 2620 876 129 22 0 chr4 150254562 150254701 -52073646 - Tigger2 DNA MER2_type -554 2164 2023 725 254 33 43 chr4 150254701 150254977 -52073370 + pTR5 LTR ERV1 743 1015 -1423 3630 150 47 48 chr4 150255165 150255853 -52072494 + LTR12 LTR ERV1 1 687 -1 710 92 100 8 chr4 150255854 150255974 -52072373 + LTR12 LTR ERV1 582 712 -2 530 75 215 0 chr4 150255974 150256067 -52072280 - Tigger2 DNA MER2_type -690 2028 1916 270 0 0 0 chr4 150256290 150256320 -52072027 + (T)n Simple_repeat Simple_repeat 1 30 0 9884 173 36 3 chr4 150256320 150258128 -52070219 - Tigger2 DNA MER2_type -800 1918 52 1999 138 3 0 chr4 150258484 150258780 -52069567 + AluSq SINE Alu 1 297 -16 307 291 55 16 chr4 150258967 150259094 -52069253 + MIR SINE MIR 77 208 -54 5278 135 16 18 chr4 150259917 150260791 -52067556 - MER4D LTR ERV1 0 872 1 3566 178 42 60 chr4 150260791 150261635 -52066712 - MER4D-int LTR ERV1 0 6758 5931 308 227 87 40 chr4 150262276 150262426 -52065921 - MER4D-int LTR ERV1 -1865 4733 4577 * 727 163 49 78 chr4 150262409 150262654 -52065693 - MER4D-int LTR ERV1 -2581 4017 3780 368 133 0 17 chr4 150262655 150262715 -52065632 - MER4D-int LTR ERV1 -3693 2638 2580 * 611 199 40 55 chr4 150262682 150262883 -52065464 - MER4D-int LTR ERV1 -4887 1711 1514 2496 204 111 92 chr4 150262884 150263366 -52064981 - MER4D-int LTR ERV1 -3510 2436 1965 366 23 0 0 chr4 150263366 150263409 -52064938 + (CA)n Simple_repeat Simple_repeat 1 43 0 2496 204 111 92 chr4 150263409 150264257 -52064090 - MER4D-int LTR ERV1 -3981 1965 1135 198 0 0 0 chr4 150264257 150264279 -52064068 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2496 204 111 92 chr4 150264279 150264389 -52063958 - MER4D-int LTR ERV1 -4811 1135 109 1012 119 26 0 chr4 150264474 150264625 -52063722 - MER4D LTR ERV1 0 872 718 1008 188 23 6 chr4 150264623 150264799 -52063548 + MER4D LTR ERV1 24 202 -701 * 695 181 6 50 chr4 150264800 150264960 -52063387 + MER4-int LTR ERV1 281 433 -6165 3643 169 9 5 chr4 150264960 150265592 -52062755 + MER4D LTR ERV1 238 872 0 226 275 64 46 chr4 150266831 150266940 -52061407 + MER103 DNA DNA 14 124 -42 3583 223 92 110 chr4 150266953 150267587 -52060760 - L1M4 LINE L1 -994 5152 4509 615 227 99 7 chr4 150267587 150267728 -52060619 - MER58B DNA MER1_type -1 340 187 3583 223 92 110 chr4 150267728 150267811 -52060536 - L1M4 LINE L1 -1637 4509 4426 1875 153 21 9 chr4 150267811 150268145 -52060202 - MER44D DNA MER2_type -1 608 1 3583 223 92 110 chr4 150268145 150269602 -52058745 - L1M4 LINE L1 -1720 4426 2877 2449 139 18 48 chr4 150270426 150270865 -52057482 + MSTB LTR MaLR 1 426 0 279 79 0 0 chr4 150271473 150271511 -52056836 + (CATA)n Simple_repeat Simple_repeat 3 40 0 213 200 0 0 chr4 150271582 150271627 -52056720 - L2 LINE L2 -4 3309 3265 22 0 0 0 chr4 150272053 150272075 -52056272 + AT_rich Low_complexity Low_complexity 1 22 0 1944 187 35 33 chr4 150272084 150272640 -52055707 + MLT2A2 LTR ERVL 1 554 0 796 287 38 0 chr4 150273059 150273268 -52055079 + MIR SINE MIR 19 235 -27 22 35 0 0 chr4 150273629 150273658 -52054689 + AT_rich Low_complexity Low_complexity 1 29 0 29 47 0 0 chr4 150273693 150273736 -52054611 + AT_rich Low_complexity Low_complexity 1 43 0 32 86 0 0 chr4 150275230 150275311 -52053036 + AT_rich Low_complexity Low_complexity 1 81 0 496 139 12 23 chr4 150277556 150277642 -52050705 + FRAM SINE Alu 38 122 -54 530 222 275 0 chr4 150278610 150278781 -52049566 - MIR SINE MIR 0 262 45 22 70 0 0 chr4 150278937 150278980 -52049367 + AT_rich Low_complexity Low_complexity 1 43 0 218 244 0 13 chr4 150279520 150279598 -52048749 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 207 301 147 19 chr4 150279788 150279944 -52048403 - MIR SINE MIR -21 241 66 4205 26 20 4 chr4 150280926 150281429 -52046918 + L1PA5 LINE L1 5643 6153 -1 194 0 0 37 chr4 150281584 150281611 -52046736 + (TAA)n Simple_repeat Simple_repeat 2 27 0 890 248 98 49 chr4 150281675 150282002 -52046345 - Charlie2 DNA MER1_type -2507 355 13 2364 284 76 40 chr4 150282723 150283813 -52044534 + L2 LINE L2 1565 2693 -621 237 227 69 54 chr4 150283867 150283974 -52044373 - MLT1G1 LTR MaLR -24 571 410 1017 284 145 29 chr4 150285181 150285734 -52042613 - MLT1G LTR MaLR -5 585 1 870 286 60 17 chr4 150285735 150286124 -52042223 + L2 LINE L2 2688 3085 -228 323 176 14 27 chr4 150286135 150286209 -52042138 - MER46C DNA MER2_type -41 297 225 377 273 91 0 chr4 150286236 150286368 -52041979 - MER46C DNA MER2_type -194 144 1 503 240 20 40 chr4 150286373 150286523 -52041824 + L2 LINE L2 3159 3305 -8 180 125 0 0 chr4 150286547 150286579 -52041768 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 228 211 13 105 chr4 150287556 150287632 -52040715 + L2 LINE L2 3198 3266 -6 184 212 47 106 chr4 150287637 150287722 -52040625 - L2 LINE L2 -1343 1971 1892 197 365 58 10 chr4 150288475 150288579 -52039768 - L2 LINE L2 -17 3255 3147 214 363 33 60 chr4 150288612 150288827 -52039520 + L2 LINE L2 2872 3080 -192 344 261 66 19 chr4 150288894 150289044 -52039303 - MIR SINE MIR -59 149 34 221 130 0 130 chr4 150289598 150289652 -52038695 - MIR SINE MIR 0 262 216 598 298 20 0 chr4 150290357 150290508 -52037839 - MIR3 SINE MIR -27 181 28 253 181 0 28 chr4 150290723 150290795 -52037552 + (TA)n Simple_repeat Simple_repeat 1 70 0 1953 171 11 3 chr4 150290795 150291152 -52037195 + L1PB4 LINE L1 5782 6141 -15 664 251 5 15 chr4 150293140 150293335 -52035012 - L1MC4a LINE L1 -1903 6141 5949 728 261 29 25 chr4 150293611 150293852 -52034495 - LTR16A LTR ERVL 0 450 209 247 320 100 0 chr4 150294044 150294144 -52034203 + MIR3 SINE MIR 94 203 -5 39 0 0 0 chr4 150294371 150294410 -52033937 + AT_rich Low_complexity Low_complexity 1 39 0 650 251 64 0 chr4 150295849 150296036 -52032311 - MER58A DNA MER1_type -15 209 11 6091 136 48 15 chr4 150296304 150297379 -52030968 - Tigger3b DNA MER2_type -13 1218 108 1862 116 161 12 chr4 150297394 150297723 -52030624 + MSTA LTR MaLR 51 428 0 597 162 9 19 chr4 150297732 150297837 -52030510 - Tigger3b DNA MER2_type -1126 105 2 21 0 0 0 chr4 150298075 150298096 -52030251 + AT_rich Low_complexity Low_complexity 1 21 0 2274 56 42 7 chr4 150298199 150298486 -52029861 - AluY SINE Alu -14 297 1 2193 122 0 0 chr4 150298544 150298838 -52029509 - AluSg SINE Alu -16 294 1 271 269 31 8 chr4 150300079 150300209 -52028138 - L1MC4a LINE L1 -387 5970 5838 1355 266 67 36 chr4 150301266 150302100 -52026247 - L1M4c LINE L1 -3221 3161 2285 387 243 85 99 chr4 150302197 150302539 -52025808 + L1MC4a LINE L1 3608 3944 -2202 2662 161 64 82 chr4 150302622 150303267 -52025080 - MER39 LTR ERV1 0 707 75 441 0 0 0 chr4 150303680 150303729 -52024618 + (CA)n Simple_repeat Simple_repeat 2 50 0 264 298 46 40 chr4 150303818 150303969 -52024378 + L1MC4a LINE L1 5261 5412 -2396 318 339 83 16 chr4 150303986 150304228 -52024119 + L1MC4a LINE L1 5917 6174 -1634 23 33 0 0 chr4 150305545 150305575 -52022772 + AT_rich Low_complexity Low_complexity 1 30 0 185 227 91 0 chr4 150305582 150305626 -52022721 - L2 LINE L2 -8 3305 3258 1987 134 7 0 chr4 150306805 150307131 -52021216 + AluSq SINE Alu 1 328 0 594 265 105 15 chr4 150307232 150307432 -52020915 + MIR SINE MIR 20 237 -25 727 238 119 46 chr4 150307432 150307844 -52020503 - MER69 DNA AcHobo 0 2526 2085 333 220 0 0 chr4 150308327 150308386 -52019961 - MER69 DNA AcHobo -2467 59 1 34 0 0 0 chr4 150308487 150308521 -52019826 + AT_rich Low_complexity Low_complexity 1 34 0 452 322 121 48 chr4 150308727 150309124 -52019223 + LTR16A LTR ERVL 25 450 0 314 289 128 64 chr4 150309380 150309615 -52018732 + L2 LINE L2 2148 2397 -917 5730 98 95 118 chr4 150309634 150311213 -52017134 - pTR5 LTR ERV1 0 2438 743 294 375 102 29 chr4 150311238 150311752 -52016595 + L2 LINE L2 2446 3012 -260 1057 170 63 22 chr4 150311808 150312125 -52016222 - THE1C LTR MaLR 0 428 1 9039 148 22 32 chr4 150312125 150313706 -52014641 - THE1C-int LTR MaLR 0 1580 15 438 53 0 79 chr4 150313756 150313832 -52014515 + Alu SINE Alu 236 305 -5 1631 159 64 25 chr4 150313838 150314165 -52014182 - THE1C LTR MaLR -35 340 1 291 291 165 19 chr4 150314184 150314287 -52014060 + L2 LINE L2 3155 3272 0 218 321 48 0 chr4 150314396 150314480 -52013867 - L2 LINE L2 0 3313 3226 1658 276 99 37 chr4 150314592 150315352 -52012995 - L2 LINE L2 -1483 1831 1025 1162 299 159 16 chr4 150315371 150315929 -52012418 + L2 LINE L2 2120 2757 -557 2685 176 32 27 chr4 150315962 150316547 -52011800 - L1MA6 LINE L1 -243 6057 5470 3638 196 38 16 chr4 150316553 150317426 -52010921 - L1MA6 LINE L1 -814 5332 4441 12636 187 59 18 chr4 150317437 150320775 -52007572 - L1PB2 LINE L1 -2 6206 1923 2039 147 0 0 chr4 150320775 150321074 -52007273 - AluSq SINE Alu -14 299 1 12636 187 59 18 chr4 150321074 150323074 -52005273 - L1PB2 LINE L1 -4285 1923 8 6681 220 32 19 chr4 150323042 150324552 -52003795 - L1PBa LINE L1 -5219 1644 114 * 9504 241 67 25 chr4 150324612 150329724 -51998623 - L1 LINE L1 -1693 5095 7 25 99 0 0 chr4 150329840 150329921 -51998426 + AT_rich Low_complexity Low_complexity 1 81 0 412 273 80 34 chr4 150330214 150330390 -51997957 - MER63A DNA MER1_type 0 210 27 284 225 14 0 chr4 150330485 150330556 -51997791 - L1M4 LINE L1 -3654 3134 3063 1805 155 86 33 chr4 150330567 150330961 -51997386 - L1PA16 LINE L1 -2 6164 5750 277 307 63 8 chr4 150330960 150331087 -51997260 - L1M4 LINE L1 -6209 580 447 * 391 283 19 19 chr4 150331822 150331981 -51996366 + L1ME1 LINE L1 6003 6161 -5 248 416 0 0 chr4 150332306 150332419 -51995928 - L2 LINE L2 -8 3305 3193 259 250 40 48 chr4 150332837 150332961 -51995386 - HAL1 LINE L1 -1163 1344 1222 304 184 48 0 chr4 150333377 150333480 -51994867 + (TA)n Simple_repeat Simple_repeat 1 108 0 835 242 28 0 chr4 150334164 150334346 -51994001 + MER58A DNA MER1_type 30 216 -8 2819 282 138 40 chr4 150334595 150336458 -51991889 + L2 LINE L2 1022 3312 -1 209 326 95 0 chr4 150336750 150336845 -51991502 - L2 LINE L2 -315 2998 2895 3056 225 91 78 chr4 150337057 150338029 -51990318 + MSTD-int LTR MaLR 747 1730 -5 1281 217 58 58 chr4 150338044 150338440 -51989907 + MSTD LTR MaLR 1 396 0 2091 123 3 3 chr4 150338461 150338762 -51989585 - AluSp SINE Alu -12 301 1 231 320 30 30 chr4 150340006 150340106 -51988241 + MIR SINE MIR 157 256 -6 21 0 0 0 chr4 150342119 150342140 -51986207 + AT_rich Low_complexity Low_complexity 1 21 0 188 239 43 0 chr4 150342390 150342436 -51985911 - L2 LINE L2 -4 3268 3221 2669 225 77 3 chr4 150343147 150343849 -51984498 + L1MD2 LINE L1 660 1413 -4996 4981 242 49 21 chr4 150343855 150343998 -51984349 + L1MD2 LINE L1 2424 2561 -3845 1974 192 54 20 chr4 150343998 150344446 -51983901 + MLT1C LTR MaLR 5 467 0 4981 242 49 21 chr4 150344446 150346038 -51982309 + L1MD2 LINE L1 2561 4208 -2198 1963 178 57 0 chr4 150346057 150346406 -51981941 + MLT1B LTR MaLR 22 390 0 713 209 29 105 chr4 150346406 150346590 -51981757 + L1MD2 LINE L1 4195 4353 -2053 2219 123 98 20 chr4 150346590 150346987 -51981360 - MSTC LTR MaLR 0 428 1 713 209 29 105 chr4 150346987 150347079 -51981268 + L1MD2 LINE L1 4353 4450 -1956 2051 166 44 58 chr4 150347144 150347625 -51980722 + L1MD2 LINE L1 5678 6151 -468 2581 164 80 15 chr4 150347628 150348166 -51980181 + L1MC2 LINE L1 5767 6339 -5 2172 199 4 34 chr4 150348167 150348644 -51979703 + L1MD2 LINE L1 6141 6603 -16 250 365 19 0 chr4 150349762 150349866 -51978481 + MIR SINE MIR 46 151 -111 273 366 0 0 chr4 150349949 150350031 -51978316 - L2 LINE L2 -1 3271 3190 382 313 69 8 chr4 150350966 150351097 -51977250 - L2 LINE L2 0 3272 3134 876 283 21 4 chr4 150351132 150351372 -51976975 - MIR SINE MIR 0 262 19 334 286 223 18 chr4 150351647 150351920 -51976427 - L2 LINE L2 -58 3255 2927 439 305 136 11 chr4 150351963 150352235 -51976112 + L2 LINE L2 3004 3309 -4 269 323 40 10 chr4 150352484 150352583 -51975764 + MIR SINE MIR 158 259 -3 201 298 0 0 chr4 150352770 150352817 -51975530 - L2 LINE L2 -25 3247 3201 224 266 131 69 chr4 150352980 150353305 -51975042 - L2 LINE L2 -209 3063 2712 23 0 0 0 chr4 150353486 150353509 -51974838 + AT_rich Low_complexity Low_complexity 1 23 0 1176 124 144 0 chr4 150354331 150354532 -51973815 - MER30 DNA MER1_type 0 230 1 23 33 0 0 chr4 150354751 150354781 -51973566 + AT_rich Low_complexity Low_complexity 1 30 0 2275 61 4 0 chr4 150355946 150356248 -51972099 + AluY SINE Alu 1 303 0 443 376 50 64 chr4 150357051 150357474 -51970873 - L2 LINE L2 -15 3257 2841 1458 188 10 34 chr4 150357831 150358123 -51970224 + L1MA8 LINE L1 -717 4294966863 -6739 12289 204 69 28 chr4 150358134 150360404 -51967943 + L1MA8 LINE L1 1394 3568 -2959 180 0 0 0 chr4 150360404 150360424 -51967923 + (CAA)n Simple_repeat Simple_repeat 2 21 0 12289 204 69 28 chr4 150360424 150362054 -51966293 + L1MA8 LINE L1 3568 5644 -883 2171 123 7 0 chr4 150362054 150362364 -51965983 - AluSp SINE Alu -1 312 1 12289 204 69 28 chr4 150362364 150363285 -51965062 + L1MA8 LINE L1 5644 6525 -2 2245 79 0 3 chr4 150363453 150363744 -51964603 - AluY SINE Alu -20 291 2 3918 191 64 9 chr4 150363748 150365260 -51963087 - L1MA8 LINE L1 -3 6295 4659 2488 243 75 19 chr4 150367001 150367775 -51960572 + MER97b DNA MER1_type? 40 856 -197 10192 169 19 42 chr4 150368077 150369862 -51958485 + L1PA14 LINE L1 3398 5133 -1028 216 67 0 0 chr4 150369862 150369892 -51958455 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 10192 169 19 42 chr4 150369892 150370892 -51957455 + L1PA14 LINE L1 5133 6154 -7 46 19 0 0 chr4 150370893 150370946 -51957401 + AT_rich Low_complexity Low_complexity 1 53 0 2401 69 0 13 chr4 150371656 150371962 -51956385 + AluY SINE Alu 1 302 -9 6721 57 20 0 chr4 150372040 150373291 -51955056 - L1PA6 LINE L1 0 6154 4888 750 188 0 0 chr4 150373291 150373419 -51954928 - Tigger3(Golem) DNA MER2_type -16 3013 2886 214 365 52 10 chr4 150376221 150376317 -51952030 + MIR SINE MIR 8 107 -155 6379 161 13 11 chr4 150376502 150377592 -51950755 - Tigger2 DNA MER2_type -1277 1441 350 955 186 17 0 chr4 150377599 150377771 -51950576 - Tigger2 DNA MER2_type -2543 175 1 31929 60 6 2 chr4 150378696 150383240 -51945107 - L1P2 LINE L1 -411 5743 1180 2863 222 53 20 chr4 150383246 150384288 -51944059 + L1ME1 LINE L1 5074 6324 -10 25 31 0 0 chr4 150385093 150385125 -51943222 + AT_rich Low_complexity Low_complexity 1 32 0 2238 116 0 0 chr4 150386051 150386353 -51941994 + AluSx SINE Alu 2 303 -9 2092 133 0 3 chr4 150386446 150386748 -51941599 + AluSq SINE Alu 1 301 -12 239 318 78 47 chr4 150387419 150387548 -51940799 + MIR3 SINE MIR 4 136 -72 1230 216 107 40 chr4 150387679 150388026 -51940321 - MLT1A2 LTR MaLR -4 370 1 224 348 25 107 chr4 150388176 150388532 -51939815 - L2 LINE L2 -22 3250 2924 23 78 0 0 chr4 150390947 150390998 -51937349 + AT_rich Low_complexity Low_complexity 1 51 0 695 195 117 7 chr4 150391255 150391409 -51936938 + MER5A DNA MER1_type 16 186 -3 1322 144 0 10 chr4 150391599 150391801 -51936546 + AluSg/x SINE Alu 87 286 -26 1159 238 72 6 chr4 150393106 150393426 -51934921 - MER2 DNA MER2_type -2 342 2 270 56 0 0 chr4 150394253 150394289 -51934058 + (TG)n Simple_repeat Simple_repeat 2 37 0 229 383 48 48 chr4 150394858 150395231 -51933116 - L2 LINE L2 -1294 2020 1648 189 0 0 0 chr4 150395612 150395633 -51932714 + (A)n Simple_repeat Simple_repeat 1 21 0 524 302 93 70 chr4 150397592 150397979 -51930368 - LTR33A LTR ERVL -126 397 2 350 201 19 15 chr4 150398051 150398145 -51930202 + MER5A DNA MER1_type 82 188 -1 1951 295 141 27 chr4 150398894 150399729 -51928618 + L2 LINE L2 1810 2842 -471 180 0 0 0 chr4 150399729 150399749 -51928598 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1951 295 141 27 chr4 150399749 150400197 -51928150 + L2 LINE L2 2842 3238 -75 776 261 18 23 chr4 150400411 150400537 -51927810 - MER58A DNA MER1_type -2200 220 94 1988 122 0 14 chr4 150400537 150400890 -51927457 + AluSq SINE Alu 1 313 0 776 261 18 23 chr4 150400890 150400981 -51927366 - MER58A DNA MER1_type -2326 94 4 22 0 0 0 chr4 150400995 150401017 -51927330 + AT_rich Low_complexity Low_complexity 1 22 0 201 301 248 9 chr4 150401113 150401226 -51927121 - MIR3 SINE MIR -48 160 21 1867 245 60 32 chr4 150404644 150405208 -51923139 - MLT1G LTR MaLR 0 590 11 419 261 6 81 chr4 150405345 150405506 -51922841 - MLT1K LTR MaLR -8 580 432 2159 113 3 3 chr4 150405507 150405808 -51922539 + AluSx SINE Alu 5 305 -7 390 305 31 16 chr4 150406722 150406850 -51921497 - MIR SINE MIR -61 147 18 425 282 114 25 chr4 150407139 150407341 -51921006 - L1ME3A LINE L1 -263 5907 5688 256 252 145 15 chr4 150408283 150408414 -51919933 - MER112 DNA MER1_type -47 213 66 770 257 27 35 chr4 150408460 150408612 -51919735 - L1MA9 LINE L1 -11 6157 6156 396 0 0 0 chr4 150408612 150408656 -51919691 + (TG)n Simple_repeat Simple_repeat 1 44 0 770 257 27 35 chr4 150408656 150408784 -51919563 - L1MA9 LINE L1 -12 6156 6029 209 286 0 0 chr4 150409548 150409597 -51918750 + (CA)n Simple_repeat Simple_repeat 2 50 0 708 246 44 20 chr4 150410862 150411065 -51917282 + MER20 DNA MER1_type 4 211 -8 1514 190 0 33 chr4 150411439 150411739 -51916608 + AluJb SINE Alu 1 290 -22 27 81 0 0 chr4 150413563 150413625 -51914722 + AT_rich Low_complexity Low_complexity 1 62 0 2140 114 10 0 chr4 150413675 150413981 -51914366 + AluSc SINE Alu 1 309 0 28 71 0 0 chr4 150414254 150414310 -51914037 + AT_rich Low_complexity Low_complexity 1 56 0 439 254 130 30 chr4 150414779 150414948 -51913399 + MIR SINE MIR 1 186 -76 1572 173 92 0 chr4 150414978 150415249 -51913098 - AluJb SINE Alu -16 296 1 24 32 0 0 chr4 150416336 150416367 -51911980 + AT_rich Low_complexity Low_complexity 1 31 0 740 203 66 16 chr4 150417932 150418114 -51910233 + MIR SINE MIR 67 257 -5 301 235 88 52 chr4 150418550 150418686 -51909661 - L1M4 LINE L1 -6385 157 17 221 250 100 0 chr4 150418708 150418768 -51909579 - MER5B DNA MER1_type 0 178 113 1007 150 0 0 chr4 150418780 150418933 -51909414 + L1PB4 LINE L1 5991 6143 -13 420 237 22 74 chr4 150419496 150419631 -51908716 + L2 LINE L2 3182 3309 -4 742 22 0 0 chr4 150421342 150421432 -51906915 - L1PA4 LINE L1 -3 6152 6063 309 351 29 29 chr4 150422188 150422362 -51905985 + MIR SINE MIR 23 196 -66 186 337 22 33 chr4 150422960 150423052 -51905295 - MIR SINE MIR -1 261 171 226 298 36 12 chr4 150423128 150423212 -51905135 - L2 LINE L2 -218 3054 2969 445 295 127 40 chr4 150423400 150423803 -51904544 - L1ME LINE L1 -366 5804 5367 276 227 219 34 chr4 150425084 150425203 -51903144 + MIR SINE MIR 2 142 -120 269 287 32 21 chr4 150425299 150425393 -51902954 + MIR SINE MIR 158 252 -10 39030 68 3 3 chr4 150425603 150431530 -51896817 - L1PA5 LINE L1 0 6154 227 924 192 62 0 chr4 150431532 150431709 -51896638 + MER5A DNA MER1_type 1 188 -1 244 99 0 155 chr4 150431734 150431805 -51896542 - L1MB8 LINE L1 -1 6177 6118 226 233 33 33 chr4 150432029 150432089 -51896258 + MER39 LTR ERV1 334 393 -314 * 1077 214 70 0 chr4 150432083 150432284 -51896063 + MER21B LTR ERV1 279 493 -370 1202 193 80 0 chr4 150432284 150432548 -51895799 - L1MB8 LINE L1 -52 6126 5842 240 35 0 0 chr4 150432825 150432854 -51895493 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 57 0 0 chr4 150434426 150434461 -51893886 + AT_rich Low_complexity Low_complexity 1 35 0 420 20 0 0 chr4 150435300 150435349 -51892998 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 2062 119 0 11 chr4 150435356 150435641 -51892706 - AluSx SINE Alu -30 282 1 231 133 96 24 chr4 150435769 150435852 -51892495 + (ATGGTG)n Simple_repeat Simple_repeat 1 89 0 239 197 0 0 chr4 150436145 150436206 -51892141 + L1MC4 LINE L1 6643 6703 -1339 22 0 0 0 chr4 150436293 150436315 -51892032 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 150436429 150436454 -51891893 + AT_rich Low_complexity Low_complexity 1 25 0 936 290 67 10 chr4 150436709 150437023 -51891324 - L3 LINE CR1 -23 1554 1223 274 258 0 0 chr4 150437230 150437292 -51891055 - MIR SINE MIR -21 241 180 212 288 27 0 chr4 150437418 150437491 -51890856 - MIR SINE MIR -128 134 60 207 331 72 61 chr4 150438466 150438647 -51889700 - L2 LINE L2 -2 3311 3129 3082 133 73 8 chr4 150441815 150442310 -51886037 + MER1A DNA MER1_type 1 527 0 209 262 0 0 chr4 150443021 150443063 -51885284 + (CA)n Simple_repeat Simple_repeat 2 43 0 221 275 231 0 chr4 150445067 150445158 -51883189 + L2 LINE L2 3165 3276 -37 364 246 2 51 chr4 150447170 150447281 -51881066 - MER2 DNA MER2_type -131 108 4 199 368 44 9 chr4 150447355 150447469 -51880878 - MIR SINE MIR -110 152 35 540 312 77 21 chr4 150449820 150450054 -51878293 + MIR SINE MIR 3 249 -13 452 171 0 34 chr4 150450516 150450604 -51877743 + MIR3 SINE MIR 109 193 -15 560 317 92 19 chr4 150452045 150452307 -51876040 + L2 LINE L2 3028 3308 -5 292 294 84 99 chr4 150453944 150454267 -51874080 + L2 LINE L2 2446 2763 -551 2247 100 0 0 chr4 150455203 150455484 -51872863 + AluSg SINE Alu 3 283 -27 465 84 0 0 chr4 150455484 150455555 -51872792 + (CATA)n Simple_repeat Simple_repeat 2 72 0 417 252 51 70 chr4 150455989 150456203 -51872144 - L2 LINE L2 -802 2512 2303 2299 91 0 0 chr4 150456440 150456725 -51871622 - AluSq SINE Alu -27 286 2 237 268 189 8 chr4 150456746 150456873 -51871474 - MIR SINE MIR -13 249 100 255 231 56 9 chr4 150457881 150457989 -51870358 + CT-rich Low_complexity Low_complexity 2 114 0 183 340 67 33 chr4 150458205 150458355 -51869992 - L3b LINE CR1 -317 1266 1112 235 353 35 9 chr4 150458930 150459046 -51869301 - L3 LINE CR1 -3 1574 1456 286 309 143 62 chr4 150459290 150459597 -51868750 - L3 LINE CR1 -284 1293 962 264 350 104 6 chr4 150460045 150460208 -51868139 + MIR3 SINE MIR 29 207 -1 1154 135 151 28 chr4 150461885 150462137 -51866210 + L1PA16 LINE L1 5884 6166 0 782 176 75 37 chr4 150463672 150463859 -51864488 - MER20 DNA MER1_type -25 194 1 1917 154 13 7 chr4 150464095 150464393 -51863954 + AluJb SINE Alu 1 300 -12 762 286 45 14 chr4 150465208 150465428 -51862919 - MIR SINE MIR -15 247 21 416 323 103 23 chr4 150465943 150466253 -51862094 + L2 LINE L2 2979 3313 0 1964 112 4 0 chr4 150471318 150471578 -51856769 + AluSq SINE Alu 22 282 -31 1630 240 38 14 chr4 150472533 150472954 -51855393 - MER63B DNA MER1_type 0 436 6 23 33 0 0 chr4 150473135 150473165 -51855182 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 150474635 150474657 -51853690 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr4 150474867 150474904 -51853443 + AT_rich Low_complexity Low_complexity 1 37 0 1664 111 118 15 chr4 150475144 150475406 -51852941 + AluSg SINE Alu 3 291 -19 415 322 53 24 chr4 150476765 150476973 -51851374 + MIR SINE MIR 8 221 -41 397 324 80 35 chr4 150478298 150478610 -51849737 - L2 LINE L2 0 3313 2988 1203 318 43 38 chr4 150478638 150479293 -51849054 - L2 LINE L2 -438 2876 2219 281 256 113 8 chr4 150479312 150479445 -51848902 - MLT1K LTR MaLR -1 587 441 1915 143 77 37 chr4 150479464 150479814 -51848533 + THE1B LTR MaLR 1 364 0 190 360 93 0 chr4 150480261 150480336 -51848011 - L2 LINE L2 -1129 2185 2104 1586 229 133 33 chr4 150480962 150481630 -51846717 + L1ME1 LINE L1 3593 4327 -1819 19563 171 34 25 chr4 150481632 150483084 -51845263 + L1MA2 LINE L1 13 1450 -6273 1795 123 19 4 chr4 150483084 150483352 -51844995 - AluSx SINE Alu -40 272 1 19563 171 34 25 chr4 150483352 150486017 -51842330 + L1MA2 LINE L1 1450 4088 -3635 195 69 0 0 chr4 150486017 150486046 -51842301 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 19563 171 34 25 chr4 150486046 150487813 -51840534 + L1MA2 LINE L1 4088 5837 -1886 2039 99 48 3 chr4 150487813 150488106 -51840241 + AluSg SINE Alu 1 306 -4 19563 171 34 25 chr4 150488106 150489853 -51838494 + L1MA2 LINE L1 5837 7723 0 969 251 81 17 chr4 150489893 150490251 -51838096 + L1ME1 LINE L1 4859 5239 -907 * 5222 195 25 23 chr4 150490248 150492453 -51835894 + L1PA16 LINE L1 3962 6166 0 602 285 96 25 chr4 150492446 150492727 -51835620 + L1ME1 LINE L1 5766 6066 -100 * 4518 119 23 120 chr4 150492886 150494516 -51833831 + L1PA13 LINE L1 4698 6162 -1 493 200 58 78 chr4 150494596 150494801 -51833546 + L1ME2 LINE L1 5840 6040 -124 242 302 23 0 chr4 150494768 150494854 -51833493 + L1MA10 LINE L1 6169 6256 -78 * 234 250 0 33 chr4 150494854 150494914 -51833433 + (TATATG)n Simple_repeat Simple_repeat 5 62 0 229 194 69 0 chr4 150495017 150495089 -51833258 + L1MA10 LINE L1 6256 6332 -2 1807 284 108 14 chr4 150495114 150496149 -51832198 + L1ME LINE L1 3589 4720 -1426 282 299 0 9 chr4 150496460 150496567 -51831780 + L1ME LINE L1 5078 5183 -963 4177 146 112 39 chr4 150496610 150497411 -51830936 + Tigger3b DNA MER2_type 1 878 -2150 207 0 0 0 chr4 150497411 150497434 -51830913 + (CTCA)n Simple_repeat Simple_repeat 4 26 0 4177 146 112 39 chr4 150497434 150497541 -51830806 + Tigger3b DNA MER2_type 878 976 -255 2124 126 11 11 chr4 150497541 150497889 -51830458 - L1MB3 LINE L1 -18 6165 5818 1877 82 25 0 chr4 150497889 150498170 -51830177 + L1P LINE L1 5098 5385 -761 1574 139 58 0 chr4 150498184 150498458 -51829889 + Tigger3b DNA MER2_type 942 1231 0 242 286 45 0 chr4 150498485 150498597 -51829750 + L1ME LINE L1 5174 5290 -856 836 255 38 8 chr4 150498659 150498894 -51829453 + L1ME LINE L1 5401 5642 -528 502 292 134 50 chr4 150498894 150499333 -51829014 + MER97a DNA MER1_type? 1 476 -418 1053 135 5 9 chr4 150499351 150499558 -51828789 + AluSq SINE Alu 2 289 -24 4655 144 55 18 chr4 150499559 150500429 -51827918 + PABL_A-int LTR ERV1 2195 3096 -1919 6481 76 10 13 chr4 150500430 150501480 -51826867 + L1PA7 LINE L1 5103 6149 -5 788 210 93 31 chr4 150503536 150503842 -51824505 - MLT1A1 LTR MaLR -4 361 1 1389 278 55 24 chr4 150503845 150504803 -51823544 + L1MCc LINE L1 1042 2033 -4891 22 0 0 0 chr4 150504953 150504975 -51823372 + AT_rich Low_complexity Low_complexity 1 22 0 457 246 108 80 chr4 150505120 150505485 -51822862 + L1MC4 LINE L1 6346 6735 -1307 685 229 26 7 chr4 150505490 150505643 -51822704 + L1MC4a LINE L1 7229 7384 -424 7561 108 15 10 chr4 150505649 150511247 -51817100 + L1PA7 LINE L1 773 6460 -9 1476 178 142 49 chr4 150511296 150511444 -51816903 + L1MD3 LINE L1 7562 7695 -300 2145 36 0 0 chr4 150511444 150511736 -51816611 + L1PA3 LINE L1 5891 6182 0 1476 178 142 49 chr4 150511736 150511973 -51816374 + L1MD3 LINE L1 7695 7984 -11 402 198 23 12 chr4 150512662 150512748 -51815599 - Tigger5 DNA MER2_type 0 2323 2237 471 209 12 0 chr4 150512760 150512846 -51815501 + Tigger5 DNA MER2_type 2 88 -2235 326 219 0 0 chr4 150512870 150512934 -51815413 - Tigger5 DNA MER2_type -9 2314 2251 316 218 0 0 chr4 150512903 150512958 -51815389 - Tigger5 DNA MER2_type -2268 55 1 * 23 0 0 0 chr4 150513312 150513335 -51815012 + AT_rich Low_complexity Low_complexity 1 23 0 2195 261 72 3 chr4 150513982 150514583 -51813764 + L1M3b LINE L1 1 642 -5639 849 67 237 0 chr4 150514613 150514748 -51813599 - MER57-int LTR ERV1 -92 7445 7279 650 152 16 32 chr4 150514748 150514873 -51813474 - LTR54B LTR ERV1 -367 131 9 11957 118 38 6 chr4 150514874 150516658 -51811689 - MER57B-int LTR ERV1 -389 7148 5307 5057 159 63 39 chr4 150516664 150517640 -51810707 - MER57B-int LTR ERV1 -1809 4273 3322 2117 112 33 10 chr4 150517640 150517945 -51810402 - AluSq SINE Alu -1 312 1 5057 159 63 39 chr4 150517945 150518404 -51809943 - MER57B-int LTR ERV1 -2760 3322 2042 4212 173 42 19 chr4 150518412 150519735 -51808612 - MER57B-int LTR ERV1 -5067 879 288 4053 147 19 12 chr4 150519733 150520399 -51807948 - MER57B-int LTR ERV1 -6866 671 1 * 2337 124 3 9 chr4 150520403 150520750 -51807597 - MER57B LTR ERV1 -5 429 85 12024 164 28 20 chr4 150520750 150522065 -51806282 - Tigger1 DNA MER2_type -220 2198 858 2179 110 7 0 chr4 150522065 150522357 -51805990 - AluY SINE Alu -17 294 1 12024 164 28 20 chr4 150522357 150523219 -51805128 - Tigger1 DNA MER2_type -1560 858 4 335 162 0 0 chr4 150523220 150523294 -51805053 + L1MA7 LINE L1 6218 6291 0 256 146 206 0 chr4 150523300 150523369 -51804978 + AluSp SINE Alu 122 181 -122 2509 128 5 8 chr4 150523936 150524312 -51804035 + THE1C LTR MaLR 1 375 0 9961 125 20 31 chr4 150524312 150525909 -51802438 + THE1C-int LTR MaLR 1 1580 0 2286 137 16 11 chr4 150525909 150526282 -51802065 + THE1C LTR MaLR 1 375 0 34487 111 12 11 chr4 150526297 150532431 -51795916 - L1PA6 LINE L1 -8 6146 13 407 290 38 15 chr4 150532989 150533120 -51795227 - L2 LINE L2 0 3313 3180 198 0 0 0 chr4 150533653 150533675 -51794672 + (TG)n Simple_repeat Simple_repeat 1 22 0 189 370 30 10 chr4 150534108 150534208 -51794139 - MIR SINE MIR -3 259 158 291 260 0 0 chr4 150534515 150534588 -51793759 - MIR SINE MIR -44 218 146 1675 65 0 69 chr4 150534918 150535165 -51793182 - AluY SINE Alu -81 230 1 2448 164 70 36 chr4 150535221 150535720 -51792627 - MER41C LTR ERV1 -38 516 1 237 132 0 0 chr4 150535873 150535911 -51792436 + (A)n Simple_repeat Simple_repeat 1 38 0 224 349 24 24 chr4 150536401 150536484 -51791863 - L2 LINE L2 -30 3242 3160 220 196 0 0 chr4 150536609 150536655 -51791692 - MIR SINE MIR -36 226 181 217 357 87 0 chr4 150537074 150537200 -51791147 + MIR3 SINE MIR 38 174 -34 201 162 0 0 chr4 150537493 150537530 -51790817 + (TA)n Simple_repeat Simple_repeat 1 37 0 312 314 155 25 chr4 150538319 150538564 -51789783 - L1MC/D LINE L1 -2222 5586 5310 26 30 0 0 chr4 150540082 150540115 -51788232 + AT_rich Low_complexity Low_complexity 1 33 0 1845 176 0 3 chr4 150540626 150540932 -51787415 - AluJb SINE Alu -7 305 1 36 0 0 0 chr4 150540943 150540979 -51787368 + AT_rich Low_complexity Low_complexity 1 36 0 944 253 152 58 chr4 150541503 150541965 -51786382 - MLT1D LTR MaLR 0 505 1 1054 229 29 60 chr4 150542038 150542422 -51785925 - MLT1A2 LTR MaLR -2 372 1 24 0 0 0 chr4 150543377 150543401 -51784946 + AT_rich Low_complexity Low_complexity 1 24 0 370 276 167 32 chr4 150544322 150544478 -51783869 - MER5B DNA MER1_type 0 178 2 2056 121 7 0 chr4 150544756 150545045 -51783302 + AluSg SINE Alu 3 293 -17 183 296 37 12 chr4 150545395 150545476 -51782871 - L2 LINE L2 0 3313 3231 436 269 119 22 chr4 150546956 150547090 -51781257 + MIR SINE MIR 3 149 -113 3135 135 31 53 chr4 150547761 150547987 -51780360 - LTR49 LTR ERV1 0 595 366 1865 174 72 39 chr4 150547987 150548401 -51779946 + MSTA LTR MaLR 1 428 0 3135 135 31 53 chr4 150548401 150548782 -51779565 - LTR49 LTR ERV1 -229 366 1 323 312 16 16 chr4 150548850 150548975 -51779372 - L1MC4 LINE L1 -1339 6703 6579 1985 151 13 0 chr4 150549313 150549624 -51778723 + THE1B LTR MaLR 1 315 -49 819 175 40 11 chr4 150550676 150550853 -51777494 + L1MC1 LINE L1 5984 6165 -168 562 221 166 6 chr4 150550861 150551024 -51777323 - MER5A DNA MER1_type 0 189 1 477 289 54 6 chr4 150551988 150552154 -51776193 - MIR SINE MIR -78 184 11 2269 163 28 5 chr4 150552451 150552849 -51775498 - MSTB LTR MaLR -19 407 1 218 266 0 9 chr4 150553410 150553523 -51774824 + (CA)n Simple_repeat Simple_repeat 1 112 0 29 47 0 0 chr4 150553598 150553641 -51774706 + AT_rich Low_complexity Low_complexity 1 43 0 23 68 0 0 chr4 150554113 150554157 -51774190 + AT_rich Low_complexity Low_complexity 1 44 0 1085 227 74 48 chr4 150554249 150554746 -51773601 + MLT2D LTR ERVL 1 520 0 529 303 7 7 chr4 150554929 150555084 -51773263 + MER74C LTR ERVL 1 155 -305 303 232 126 40 chr4 150555297 150555448 -51772899 + L1MB8 LINE L1 3031 3194 -2952 2346 73 0 25 chr4 150555557 150555873 -51772474 + AluY SINE Alu 1 308 -3 666 308 38 10 chr4 150555899 150556345 -51772002 + L1MB8 LINE L1 3511 3978 -2168 1801 174 7 19 chr4 150556381 150556691 -51771656 + AluSx SINE Alu 6 311 -1 30 27 0 0 chr4 150556714 150556751 -51771596 + AT_rich Low_complexity Low_complexity 1 37 0 412 308 56 56 chr4 150557032 150557708 -51770639 + L1MB8 LINE L1 4311 4986 -1160 270 0 0 0 chr4 150557727 150557757 -51770590 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 509 114 102 0 chr4 150557884 150557972 -51770375 + MER4A LTR ERV1 1 97 -567 1625 120 168 88 chr4 150557979 150558330 -51770017 + MER4A LTR ERV1 263 641 -23 2002 104 10 28 chr4 150558330 150558618 -51769729 + AluSp SINE Alu 1 283 -30 25 0 0 0 chr4 150558618 150558643 -51769704 + AT_rich Low_complexity Low_complexity 1 25 0 243 158 0 0 chr4 150558643 150558681 -51769666 + MER4A LTR ERV1 627 664 0 270 185 19 56 chr4 150558867 150558975 -51769372 + (CTAA)n Simple_repeat Simple_repeat 2 105 0 1989 142 129 3 chr4 150559610 150559990 -51768357 + MSTA LTR MaLR 1 428 0 318 259 24 12 chr4 150560002 150560087 -51768260 - L2 LINE L2 -5 3308 3223 22 35 0 0 chr4 150561194 150561223 -51767124 + AT_rich Low_complexity Low_complexity 1 29 0 376 289 103 20 chr4 150561382 150561586 -51766761 - MIR SINE MIR -10 252 32 3811 207 34 6 chr4 150562102 150562929 -51765418 + L1MB8 LINE L1 5324 6173 -5 855 276 91 46 chr4 150562994 150563425 -51764922 - LTR33 LTR ERVL -71 450 1 561 301 67 10 chr4 150563619 150563828 -51764519 + MIR SINE MIR 23 243 -19 189 265 24 72 chr4 150563921 150564004 -51764343 + L2 LINE L2 3235 3313 0 236 341 87 29 chr4 150564151 150564648 -51763699 + L2 LINE L2 2564 3047 -225 678 294 114 75 chr4 150564690 150565052 -51763295 + L2 LINE L2 2858 3241 -72 2178 98 152 13 chr4 150565052 150565428 -51762919 - MSTA LTR MaLR 0 428 1 678 294 114 75 chr4 150565428 150565503 -51762844 + L2 LINE L2 3241 3312 -1 190 310 70 70 chr4 150565591 150565661 -51762686 + L2 LINE L2 3168 3240 -32 1251 244 125 36 chr4 150565661 150566165 -51762182 - MLT1H LTR MaLR 0 549 1 190 310 70 70 chr4 150566165 150566194 -51762153 + L2 LINE L2 3239 3267 -5 469 231 17 75 chr4 150566196 150566369 -51761978 - MIR SINE MIR 0 262 100 365 313 23 15 chr4 150566578 150566709 -51761638 + MER5A DNA MER1_type 58 189 0 225 0 0 0 chr4 150566875 150566900 -51761447 + (CA)n Simple_repeat Simple_repeat 2 26 0 42611 34 21 2 chr4 150567804 150573836 -51754511 + L1PA2 LINE L1 2 6154 -1 332 271 83 80 chr4 150573859 150574427 -51753920 - L1MDa LINE L1 -3092 3448 2883 2099 117 3 0 chr4 150574427 150574709 -51753638 + AluSx SINE Alu 1 283 -29 375 23 0 0 chr4 150574712 150574756 -51753591 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 332 271 83 80 chr4 150574756 150574807 -51753540 - L1MDa LINE L1 -3658 2882 2823 2518 215 54 67 chr4 150574860 150575563 -51752784 - LTR8A LTR ERV1 0 727 34 314 237 135 39 chr4 150575712 150575868 -51752479 - L1MDa LINE L1 -3931 2609 2439 313 365 90 11 chr4 150576805 150576983 -51751364 - HAL1 LINE L1 -902 1605 1414 2566 137 12 68 chr4 150577007 150577498 -51750849 + MER50 LTR ERV1 1 463 -271 1606 182 49 30 chr4 150577498 150577866 -51750481 + THE1C LTR MaLR 1 375 0 9344 136 14 40 chr4 150577868 150579489 -51748858 + THE1C-int LTR MaLR 3 1580 0 1419 185 196 16 chr4 150579489 150579852 -51748495 + MSTA LTR MaLR 1 428 0 1337 194 28 4 chr4 150579852 150580099 -51748248 + MER50 LTR ERV1 459 711 -23 21 0 0 0 chr4 150580168 150580189 -51748158 + AT_rich Low_complexity Low_complexity 1 21 0 3321 146 77 23 chr4 150581122 150581785 -51746562 - LTR34 LTR ERV1 0 699 1 3300 140 30 18 chr4 150581858 150582401 -51745946 + Tigger1 DNA MER2_type 17 565 -1853 1057 233 78 41 chr4 150582404 150583091 -51745256 - L1MC/D LINE L1 -748 5398 4857 729 176 30 12 chr4 150583100 150583265 -51745082 + L1M4 LINE L1 4740 4907 -1239 4594 244 67 22 chr4 150583311 150586221 -51742126 + L1PBb LINE L1 690 3746 -2457 2268 103 3 6 chr4 150586221 150586532 -51741815 + AluSg SINE Alu 1 310 0 4594 244 67 22 chr4 150586532 150586565 -51741782 + L1PBb LINE L1 3746 3776 -2427 568 182 91 14 chr4 150586560 150586703 -51741644 + L1MC2 LINE L1 6181 6334 -10 * 691 276 111 28 chr4 150586703 150587193 -51741154 - L1MC/D LINE L1 -1286 4860 4309 8894 108 19 2 chr4 150587193 150588456 -51739891 - HSMAR1 DNA Mariner 0 1287 3 691 276 111 28 chr4 150588456 150588569 -51739778 - L1MC/D LINE L1 -1837 4309 4207 838 155 53 24 chr4 150588589 150588796 -51739551 - L1MDa LINE L1 -3970 2570 2358 6270 220 80 18 chr4 150588807 150589106 -51739241 - L1MDa LINE L1 -4636 1904 1625 1960 142 189 3 chr4 150589106 150589487 -51738860 - LTR47A LTR ERVL 0 452 1 6270 220 80 18 chr4 150589487 150590881 -51737466 - L1MDa LINE L1 -4915 1625 1 2989 148 38 41 chr4 150591138 150591221 -51737126 - L1M3 LINE L1 -344 5824 5742 1214 245 65 16 chr4 150591221 150591604 -51736743 + MER93a LTR ERV1 1 402 0 2989 148 38 41 chr4 150591604 150592060 -51736287 - L1M3 LINE L1 -426 5742 5297 345 47 0 0 chr4 150592060 150592103 -51736244 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2989 148 38 41 chr4 150592103 150592411 -51735936 - L1M3 LINE L1 -871 5297 4989 1567 178 52 9 chr4 150592411 150592737 -51735610 + L1MB1 LINE L1 5828 6167 -1 401 54 18 0 chr4 150593042 150593098 -51735249 + (TTCCC)n Simple_repeat Simple_repeat 3 59 0 1357 186 83 51 chr4 150594795 150595082 -51733265 - MLT1A1 LTR MaLR 0 365 64 4578 168 49 58 chr4 150595082 150596163 -51732184 - MER11C LTR ERVK 0 1071 1 1357 186 83 51 chr4 150596163 150596225 -51732122 - MLT1A1 LTR MaLR -301 64 5 1064 210 56 68 chr4 150596633 150597029 -51731318 + LTR37B LTR ERV1 1 391 -77 1444 251 38 53 chr4 150597261 150597844 -51730503 - MER68 LTR ERV1 -27 535 1 2158 113 3 0 chr4 150597869 150598160 -51730187 + AluSg SINE Alu 14 305 -5 180 0 0 0 chr4 150598242 150598262 -51730085 + (TTA)n Simple_repeat Simple_repeat 2 21 0 246 167 56 111 chr4 150598376 150598425 -51729922 - L2 LINE L2 -1337 1977 1932 2281 74 0 83 chr4 150598425 150598764 -51729583 + AluY SINE Alu 1 311 0 246 167 56 111 chr4 150598764 150598786 -51729561 - L2 LINE L2 -1382 1932 1910 1624 208 13 40 chr4 150598851 150599231 -51729116 + MLT1A2 LTR MaLR 1 370 -4 2008 190 59 14 chr4 150599409 150599733 -51728614 + MER74C LTR ERVL 5 354 -106 2876 127 2 2 chr4 150599733 150600158 -51728189 - MER61B LTR ERV1 0 425 1 2008 190 59 14 chr4 150600158 150600254 -51728093 + MER74C LTR ERVL 354 444 -16 986 169 28 0 chr4 150600347 150600524 -51727823 + MER105 DNA DNA 21 202 -2 3284 138 104 20 chr4 150602274 150602917 -51725430 - LTR34 LTR ERV1 -2 697 1 928 264 84 93 chr4 150603240 150603353 -51724994 + MER31-int LTR ERV1 3342 3455 -1481 5563 123 21 31 chr4 150603353 150604263 -51724084 - MER4D LTR ERV1 -2 901 1 928 264 84 93 chr4 150604263 150604911 -51723436 + MER31-int LTR ERV1 3455 4096 -840 698 248 86 53 chr4 150604976 150605408 -51722939 + LTR37B LTR ERV1 18 463 -5 269 349 8 40 chr4 150606246 150606372 -51721975 + L2 LINE L2 3141 3262 -10 1614 284 174 21 chr4 150606975 150607773 -51720574 + L2 LINE L2 1827 2746 -568 556 292 85 74 chr4 150607767 150608157 -51720190 + L2 LINE L2 2920 3313 0 * 2337 160 47 53 chr4 150608403 150608873 -51719474 - LTR24 LTR ERV1 0 467 1 401 252 35 17 chr4 150608873 150608988 -51719359 - LTR24-int LTR ERV1 0 5123 5007 411 318 13 13 chr4 150609341 150609492 -51718855 - LTR24-int LTR ERV1 -538 4416 4266 1902 138 65 14 chr4 150609515 150609871 -51718476 - THE1C LTR MaLR -1 374 1 2064 115 7 0 chr4 150610177 150610456 -51717891 + AluSp SINE Alu 1 281 -32 333 0 0 0 chr4 150610460 150610497 -51717850 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 43186 48 1 3 chr4 150611400 150617563 -51710784 - L1PA4 LINE L1 -2 6153 2 253 277 68 100 chr4 150619451 150619761 -51708586 - LTR24-int LTR ERV1 -4735 3078 2779 250 298 21 21 chr4 150621005 150621099 -51707248 - MER21B-int LTR ERV1 -5373 1428 1335 368 371 79 38 chr4 150621749 150622016 -51706331 - MER21B-int LTR ERV1 -6079 679 402 1216 214 23 62 chr4 150622065 150622452 -51705895 - MER21B-int LTR ERV1 -4471 652 281 198 380 100 9 chr4 150622455 150622684 -51705663 - L3b LINE CR1 -56 1527 1278 225 154 0 0 chr4 150622742 150622781 -51705566 + (TA)n Simple_repeat Simple_repeat 2 40 0 4179 204 41 10 chr4 150622953 150623738 -51704609 - MER21B LTR ERV1 -54 809 1 209 171 0 0 chr4 150623892 150623927 -51704420 - MIR3 SINE MIR -9 199 165 189 0 0 0 chr4 150624464 150624485 -51703862 + (ATG)n Simple_repeat Simple_repeat 3 23 0 570 285 20 0 chr4 150624485 150624636 -51703711 - MIR SINE MIR -17 245 92 1293 211 41 9 chr4 150624894 150625211 -51703136 - L1MC3 LINE L1 -1 7784 7458 931 263 30 4 chr4 150625205 150625471 -51702876 - L1MCa LINE L1 -1888 4538 4266 * 1669 247 73 28 chr4 150625470 150625838 -51702509 - L1MCa LINE L1 -3498 2928 2578 2291 186 9 15 chr4 150625838 150626305 -51702042 - L1MB5 LINE L1 -9 6165 5702 1669 247 73 28 chr4 150626305 150626972 -51701375 - L1MCa LINE L1 -3848 2578 1822 * 6758 32 0 0 chr4 150626967 150627773 -51700574 - L1P LINE L1 -1910 4236 3431 2242 229 44 16 chr4 150627782 150628545 -51699802 - L1MCa LINE L1 -4591 1835 963 288 343 118 32 chr4 150628545 150629009 -51699338 + L2 LINE L2 2131 2634 -680 25295 146 18 22 chr4 150629369 150635774 -51692573 - L1PA8A LINE L1 -5 6441 1 21 71 0 0 chr4 150636877 150636919 -51691428 + AT_rich Low_complexity Low_complexity 1 42 0 210 178 0 22 chr4 150637070 150637115 -51691232 + T-rich Low_complexity Low_complexity 5 48 0 2660 197 38 24 chr4 150639582 150640136 -51688211 - MER68 LTR ERV1 0 562 1 285 98 0 0 chr4 150640509 150640550 -51687797 + (T)n Simple_repeat Simple_repeat 1 41 0 2218 112 3 0 chr4 150642311 150642605 -51685742 + AluSp SINE Alu 1 295 -18 728 221 0 100 chr4 150642907 150643097 -51685250 - MER45A DNA AcHobo -5 173 3 4046 125 40 6 chr4 150644732 150645410 -51682937 - Tigger3b DNA MER2_type 0 1232 532 1042 191 0 0 chr4 150645411 150645584 -51682763 + FAM SINE Alu 2 174 -11 1404 104 50 268 chr4 150645585 150646219 -51682128 - Tigger3b DNA MER2_type -691 540 1 202 125 42 0 chr4 150646219 150646267 -51682080 + (TA)n Simple_repeat Simple_repeat 1 50 0 569 257 40 13 chr4 150646435 150646587 -51681760 + MER117 DNA MER1_type 1 156 -41 824 306 38 35 chr4 150646792 150647132 -51681215 + LTR16B LTR ERVL 124 464 0 696 175 26 0 chr4 150648256 150648370 -51679977 - FLAM_C SINE Alu -16 117 1 278 162 40 30 chr4 150649368 150649467 -51678880 + (TTTAA)n Simple_repeat Simple_repeat 2 101 0 226 283 111 30 chr4 150649670 150649769 -51678578 + MIR SINE MIR 44 150 -112 1012 191 146 57 chr4 150649792 150650127 -51678220 + MLT1A1 LTR MaLR 1 365 0 301 299 104 12 chr4 150650239 150650403 -51677944 + L1ME LINE L1 5646 5824 -297 21 0 0 0 chr4 150650411 150650432 -51677915 + AT_rich Low_complexity Low_complexity 1 21 0 1663 187 10 24 chr4 150651566 150651860 -51676487 + AluJo SINE Alu 3 292 -20 3197 241 37 20 chr4 150651861 150652836 -51675511 + L1MC1 LINE L1 3337 4327 -1819 1438 215 15 0 chr4 150652846 150653106 -51675241 + Tigger7 DNA MER2_type 1 264 -469 469 211 42 11 chr4 150653111 150653206 -51675141 + Tigger7 DNA MER2_type 2487 2584 -3 5644 199 41 8 chr4 150653209 150655136 -51673211 + L1MC1 LINE L1 4336 6324 -9 397 283 80 27 chr4 150655455 150655642 -51672705 - MIR SINE MIR -46 216 20 25 31 0 0 chr4 150655699 150655731 -51672616 + AT_rich Low_complexity Low_complexity 1 32 0 1197 229 66 33 chr4 150655731 150656158 -51672189 - MER113 DNA MER1_type? -73 448 8 531 281 67 30 chr4 150656292 150656456 -51671891 - MIR3 SINE MIR -18 190 21 657 234 16 33 chr4 150656559 150656743 -51671604 + MER105 DNA DNA 18 198 -6 3868 174 7 56 chr4 150656750 150658087 -51670260 + L1MB1 LINE L1 4745 6022 -167 1002 226 38 89 chr4 150658088 150658482 -51669865 + MLT1A2 LTR MaLR 1 374 0 677 179 13 20 chr4 150658482 150658633 -51669714 + L1MB1 LINE L1 6019 6168 0 227 133 61 71 chr4 150658764 150658862 -51669485 + T-rich Low_complexity Low_complexity 1 97 0 2477 50 0 10 chr4 150659001 150659301 -51669046 - AluY SINE Alu -14 297 1 339 85 0 0 chr4 150659355 150659379 -51668968 + (CA)n Simple_repeat Simple_repeat 1 71 0 339 85 0 0 chr4 150659379 150659426 -51668921 + (CA)n Simple_repeat Simple_repeat 2 48 0 480 246 0 0 chr4 150659435 150659549 -51668798 - L1MC4a LINE L1 -1882 5926 5813 800 278 5 5 chr4 150659622 150659813 -51668534 + MIR SINE MIR 47 237 -25 193 333 17 0 chr4 150659815 150659875 -51668472 + MIR SINE MIR 186 246 -16 505 292 42 25 chr4 150659928 150660164 -51668183 - L1MC4a LINE L1 -2072 5736 5497 302 278 68 68 chr4 150660166 150660342 -51668005 - L1MC4a LINE L1 -2350 5458 5283 502 256 15 8 chr4 150660626 150660759 -51667588 + MER94 DNA DNA 1 134 0 191 59 0 29 chr4 150662661 150662695 -51665652 + (TTATA)n Simple_repeat Simple_repeat 2 34 0 3340 193 14 0 chr4 150663125 150663715 -51664632 + MER77 LTR ERV1 8 605 0 1338 249 90 61 chr4 150663988 150664445 -51663902 - MLT1F LTR MaLR -70 472 3 221 277 60 0 chr4 150664601 150664684 -51663663 - MIR SINE MIR -70 192 105 1226 229 82 133 chr4 150664877 150665386 -51662961 - HsTC2c DNA Tc2 -1223 675 210 1478 182 3 39 chr4 150665386 150665672 -51662675 - AluJb SINE Alu 0 312 37 1226 229 82 133 chr4 150665672 150665869 -51662478 - HsTC2c DNA Tc2 -1688 210 5 1674 215 39 65 chr4 150666418 150666929 -51661418 - MLT1D LTR MaLR -5 500 3 226 350 103 8 chr4 150667070 150667187 -51661160 + MIR SINE MIR 20 147 -61 2538 133 0 3 chr4 150667404 150667780 -51660567 + THE1C LTR MaLR 1 375 0 4278 113 57 79 chr4 150667780 150668550 -51659797 + THE1C-int LTR MaLR 1 753 -827 698 168 59 0 chr4 150668584 150668703 -51659644 - FLAM_C SINE Alu -7 126 1 51 92 0 0 chr4 150668706 150668848 -51659499 + AT_rich Low_complexity Low_complexity 1 142 0 270 0 0 0 chr4 150669251 150669281 -51659066 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 1507 170 0 73 chr4 150669284 150669584 -51658763 - AluJb SINE Alu -34 278 1 2618 113 8 0 chr4 150670482 150670853 -51657494 - THE1C LTR MaLR -1 374 1 5562 112 27 10 chr4 150670853 150671665 -51656682 - THE1C-int LTR MaLR 0 1580 755 777 171 7 20 chr4 150671665 150671817 -51656530 + FRAM SINE Alu 16 165 -11 182 37 37 0 chr4 150671821 150671848 -51656499 + (TG)n Simple_repeat Simple_repeat 1 28 0 413 323 91 38 chr4 150672054 150672317 -51656030 - L1MC4a LINE L1 -1910 5898 5622 1061 153 6 0 chr4 150672318 150672481 -51655866 + AluSx SINE Alu 1 164 -148 353 278 113 91 chr4 150672482 150672564 -51655783 - L1MC4a LINE L1 -490 5631 5552 1934 136 10 10 chr4 150672564 150672858 -51655489 + AluSg SINE Alu 3 296 -14 353 278 113 91 chr4 150672858 150673084 -51655263 - L1MC4a LINE L1 -569 5552 5316 315 49 0 0 chr4 150673450 150673491 -51654856 + (TG)n Simple_repeat Simple_repeat 2 42 0 254 246 96 73 chr4 150673852 150674112 -51654235 - L1MC4a LINE L1 -3000 3146 2881 23 0 0 0 chr4 150674171 150674194 -51654153 + AT_rich Low_complexity Low_complexity 1 23 0 943 316 65 11 chr4 150674353 150674707 -51653640 - L2 LINE L2 0 3313 2941 285 246 105 41 chr4 150675192 150675363 -51652984 + HAL1 LINE L1 820 1001 -1506 2003 136 7 0 chr4 150675397 150675684 -51652663 + AluSx SINE Alu 1 289 -23 362 274 57 78 chr4 150675688 150675918 -51652429 + HAL1 LINE L1 1083 1307 -1200 864 271 103 6 chr4 150676438 150676740 -51651607 + MLT1J1 LTR MaLR 1 329 -121 2297 84 3 3 chr4 150677729 150678027 -51650320 + AluSp SINE Alu 8 305 -8 54 0 0 0 chr4 150678092 150678146 -51650201 + AT_rich Low_complexity Low_complexity 1 54 0 268 43 21 21 chr4 150678146 150678193 -51650154 + (TATAA)n Simple_repeat Simple_repeat 3 49 0 182 83 56 0 chr4 150678860 150678896 -51649451 + A-rich Low_complexity Low_complexity 3 40 0 764 189 0 6 chr4 150681052 150681216 -51647131 + GA-rich Low_complexity Low_complexity 3 165 0 2364 60 0 41 chr4 150682620 150682938 -51645409 - AluY SINE Alu -6 305 1 1662 204 6 70 chr4 150683336 150683783 -51644564 - MER67C LTR ERV1 -78 436 47 183 378 142 24 chr4 150685181 150685308 -51643039 - L3 LINE CR1 -1 1576 1435 211 306 162 18 chr4 150685362 150685473 -51642874 + MIR SINE MIR 20 146 -116 232 291 106 15 chr4 150685666 150685865 -51642482 - L1MC4 LINE L1 -705 7337 7121 1482 140 143 11 chr4 150687565 150687830 -51640517 + AluJo SINE Alu 1 300 -2 1125 103 0 0 chr4 150688058 150688204 -51640143 + AluY SINE Alu 3 148 -163 7439 154 7 9 chr4 150688320 150689535 -51638812 + Tigger2 DNA MER2_type 1453 2664 -54 12037 211 23 27 chr4 150689603 150691383 -51636964 - L1PA16 LINE L1 -2 6867 5082 252 0 0 0 chr4 150691383 150691411 -51636936 + (TG)n Simple_repeat Simple_repeat 1 28 0 12037 211 23 27 chr4 150691411 150692464 -51635883 - L1PA16 LINE L1 -1787 5082 4026 2183 185 39 2 chr4 150692464 150692875 -51635472 - MSTB LTR MaLR 0 426 1 12037 211 23 27 chr4 150692875 150694004 -51634343 - L1PA16 LINE L1 -2843 4026 2915 405 86 0 0 chr4 150694004 150694062 -51634285 + (TA)n Simple_repeat Simple_repeat 1 58 0 12037 211 23 27 chr4 150694062 150694188 -51634159 - L1PA16 LINE L1 -3954 2915 2790 5119 95 24 1 chr4 150694341 150695079 -51633268 - L1PA13 LINE L1 -13 6150 5396 * 10573 174 72 20 chr4 150695068 150697357 -51630990 + L1PA13 LINE L1 2984 5391 -755 7896 250 41 22 chr4 150697362 150699134 -51629213 - L1PA16 LINE L1 -4974 1875 71 969 113 0 0 chr4 150699159 150699309 -51629038 + (TA)n Simple_repeat Simple_repeat 2 151 0 240 288 0 17 chr4 150699317 150699376 -51628971 + Tigger2 DNA MER2_type 2651 2708 -10 43 35 0 0 chr4 150699626 150699683 -51628664 + AT_rich Low_complexity Low_complexity 1 57 0 2864 150 6 8 chr4 150699760 150700239 -51628108 + MER9 LTR ERVK 34 511 0 4448 108 9 18 chr4 150700239 150700907 -51627440 + HERVK9 LTR ERVK 1 662 -5254 5683 89 0 0 chr4 150700907 150701656 -51626691 + HERVK9 LTR ERVK 1625 2373 -3543 * 6790 123 1 0 chr4 150701645 150702621 -51625726 + HERVK9 LTR ERVK 4658 5634 -282 2081 131 24 11 chr4 150702646 150702996 -51625351 + HERVK9 LTR ERVK 5635 5916 0 2873 151 8 6 chr4 150703003 150703480 -51624867 + MER9 LTR ERVK 34 511 0 263 299 179 22 chr4 150704729 150704913 -51623434 - MIR SINE MIR -37 225 13 2159 126 0 0 chr4 150705008 150705344 -51623003 - AluSq SINE Alu 0 313 1 592 81 0 0 chr4 150705344 150705431 -51622916 + L1MA2 LINE L1 6116 6202 -102 2401 169 34 14 chr4 150705431 150706054 -51622293 + L1P4 LINE L1 4977 5617 -549 2321 161 41 14 chr4 150706054 150706471 -51621876 + MSTA LTR MaLR 1 428 0 2401 169 34 14 chr4 150706471 150706561 -51621786 + L1P4 LINE L1 5617 5704 -462 295 233 23 35 chr4 150706561 150706647 -51621700 - MLT1D LTR MaLR -409 96 12 856 147 93 0 chr4 150706658 150706808 -51621539 + MLT1D LTR MaLR 337 500 -5 271 366 82 0 chr4 150706837 150706971 -51621376 + MLT1K LTR MaLR 249 393 -195 677 255 20 25 chr4 150706976 150707176 -51621171 + MLT1I LTR MaLR 1 199 -210 262 225 9 108 chr4 150707390 150707426 -51620921 + MLT1K LTR MaLR 488 526 -62 2431 90 0 3 chr4 150707426 150707737 -51620610 - AluSg SINE Alu 0 310 1 262 225 9 108 chr4 150707737 150707811 -51620536 + MLT1K LTR MaLR 526 587 -1 185 284 0 74 chr4 150707861 150707942 -51620405 - L2 LINE L2 0 3313 3239 518 200 11 0 chr4 150707960 150708055 -51620292 + MER33 DNA MER1_type 1 96 -228 229 242 16 0 chr4 150708196 150708258 -51620089 + (TAAA)n Simple_repeat Simple_repeat 3 65 0 281 355 121 0 chr4 150708674 150708840 -51619507 - MIR SINE MIR -19 243 58 21 36 0 0 chr4 150708959 150708987 -51619360 + AT_rich Low_complexity Low_complexity 1 28 0 302 362 43 21 chr4 150709264 150709405 -51618942 + MIR3 SINE MIR 19 162 -46 908 259 106 60 chr4 150709616 150710114 -51618233 + HAL1 LINE L1 1245 1765 -742 357 237 15 30 chr4 150710441 150710572 -51617775 + HAL1 LINE L1 2290 2418 -89 202 118 29 0 chr4 150710606 150710640 -51617707 + (TG)n Simple_repeat Simple_repeat 2 36 0 1817 152 73 0 chr4 150711392 150711681 -51616666 + AluSg SINE Alu 1 310 0 31 92 0 0 chr4 150712561 150712648 -51615699 + AT_rich Low_complexity Low_complexity 1 87 0 1828 173 13 0 chr4 150712943 150713243 -51615104 - AluJo SINE Alu -8 304 1 237 210 10 20 chr4 150713393 150713493 -51614854 + (TA)n Simple_repeat Simple_repeat 1 99 0 218 195 12 85 chr4 150713503 150713546 -51614801 + (CATATA)n Simple_repeat Simple_repeat 6 42 -39 2118 169 44 12 chr4 150713546 150713977 -51614370 + MER65A LTR ERV1 1 445 0 218 195 12 85 chr4 150713977 150714015 -51614332 + (CATATA)n Simple_repeat Simple_repeat 42 81 0 235 176 59 0 chr4 150714818 150714869 -51613478 - MARNA DNA Mariner -199 387 334 1979 253 94 42 chr4 150715593 150715706 -51612641 - L1ME2 LINE L1 -10 6154 6048 2273 117 0 0 chr4 150715706 150716013 -51612334 - AluSx SINE Alu -3 309 3 1979 253 94 42 chr4 150716013 150716631 -51611716 - L1ME2 LINE L1 -116 6048 5385 3199 128 22 0 chr4 150716635 150717125 -51611222 + L1PA13 LINE L1 5661 6163 0 1325 222 126 7 chr4 150717148 150717704 -51610643 - L1ME LINE L1 -520 5644 5036 1095 153 36 142 chr4 150717704 150717808 -51610539 + Charlie3 DNA MER1_type 2 115 -414 1970 112 0 4 chr4 150717808 150718076 -51610271 - AluSq SINE Alu -4 309 43 1095 153 36 142 chr4 150718076 150718245 -51610102 + Charlie3 DNA MER1_type 115 246 -283 409 159 0 80 chr4 150718247 150718335 -51610012 + Charlie3 DNA MER1_type 2622 2702 -8 239 287 131 0 chr4 150718335 150718457 -51609890 - L1ME LINE L1 -1103 5043 4906 2132 107 17 3 chr4 150718792 150719082 -51609265 - AluSc SINE Alu -15 294 1 795 342 22 8 chr4 150719157 150719525 -51608822 - L1MCc LINE L1 -5981 442 70 463 279 71 10 chr4 150719942 150720139 -51608208 + HAL1 LINE L1 2105 2313 -194 21 0 0 0 chr4 150720532 150720553 -51607794 + AT_rich Low_complexity Low_complexity 1 21 0 324 356 99 14 chr4 150722516 150722738 -51605609 + L1ME4a LINE L1 5597 5837 -284 306 223 89 45 chr4 150722784 150722941 -51605406 + L1ME4a LINE L1 5956 6119 -2 522 46 0 0 chr4 150724048 150724113 -51604234 + (TG)n Simple_repeat Simple_repeat 1 65 0 243 0 0 0 chr4 150725127 150725154 -51603193 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 200 297 36 90 chr4 150725344 150725455 -51602892 + L2 LINE L2 2959 3063 -209 619 217 45 32 chr4 150725730 150725887 -51602460 + MER5A DNA MER1_type 31 189 0 2544 54 0 10 chr4 150726388 150726702 -51601645 - AluY SINE Alu 0 311 1 23 0 0 0 chr4 150727900 150727923 -51600424 + AT_rich Low_complexity Low_complexity 1 23 0 197 255 21 0 chr4 150728707 150728754 -51599593 + MER5A DNA MER1_type 9 56 -133 438 192 39 0 chr4 150729181 150729259 -51599088 + Tigger3(Golem) DNA MER2_type 1 81 -2948 1915 75 115 11 chr4 150729811 150730090 -51598257 + AluSg1 SINE Alu 1 308 -1 2451 63 10 3 chr4 150730515 150730817 -51597530 + AluY SINE Alu 1 304 -7 4171 154 17 38 chr4 150731741 150732519 -51595828 + L1MA9 LINE L1 5507 6269 -43 2252 108 0 10 chr4 150732519 150732815 -51595532 - AluSq SINE Alu -20 293 1 4171 154 17 38 chr4 150732815 150732859 -51595488 + L1MA9 LINE L1 6269 6312 0 23 33 0 0 chr4 150733460 150733490 -51594857 + AT_rich Low_complexity Low_complexity 1 30 0 546 296 47 86 chr4 150733902 150734369 -51593978 - MLT1J2 LTR MaLR -1 449 1 1668 238 14 6 chr4 150734425 150734787 -51593560 + MLT1A1 LTR MaLR 1 365 0 256 276 122 20 chr4 150736210 150736308 -51592039 + MIR3 SINE MIR 47 154 -54 3037 103 38 55 chr4 150736429 150736614 -51591733 - L1MA2 LINE L1 0 6304 6117 2055 126 0 7 chr4 150736614 150736919 -51591428 + AluSx SINE Alu 1 303 0 3037 103 38 55 chr4 150736919 150737258 -51591089 - L1MA2 LINE L1 -187 6117 5788 208 354 71 8 chr4 150738359 150738486 -51589861 - MIR SINE MIR -112 150 16 1067 148 225 30 chr4 150738493 150738764 -51589583 + MER33 DNA MER1_type 1 324 0 2095 101 15 58 chr4 150738863 150739190 -51589157 + AluSq SINE Alu 1 313 0 2658 26 7 0 chr4 150739375 150739680 -51588667 - AluYb8 SINE Alu -11 307 1 1990 118 3 36 chr4 150739685 150739989 -51588358 - AluY SINE Alu -17 294 1 572 183 16 10 chr4 150740463 150740598 -51587749 - L1MB8 LINE L1 -210 5968 5833 402 257 9 9 chr4 150740597 150740710 -51587637 - L1MB5 LINE L1 -229 5945 5833 * 1517 248 70 25 chr4 150740719 150741194 -51587153 - L1MB5 LINE L1 -250 5924 5429 1331 184 68 0 chr4 150741456 150741734 -51586613 - AluJo SINE Alu -15 297 1 355 275 6 6 chr4 150742114 150742285 -51586062 + (TG)n Simple_repeat Simple_repeat 1 171 0 183 283 0 0 chr4 150742305 150742365 -51585982 + (TG)n Simple_repeat Simple_repeat 2 61 0 271 122 41 0 chr4 150742366 150742415 -51585932 + MER4-int LTR ERV1 1112 1162 -5436 831 216 0 0 chr4 150742420 150742754 -51585593 + (TG)n Simple_repeat Simple_repeat 1 334 0 1384 202 93 82 chr4 150749607 150750121 -51578226 + MLT2B1 LTR ERVL 1 520 0 746 312 136 5 chr4 150750121 150750689 -51577658 - L2 LINE L2 -1128 2186 1545 247 249 183 76 chr4 150750878 150751167 -51577180 - HAL1 LINE L1 -648 1859 1540 595 253 35 92 chr4 150754822 150755190 -51573157 - MLT1B LTR MaLR -1 389 43 3280 164 18 0 chr4 150756745 150757537 -51570810 - L1P4 LINE L1 -659 5507 4703 406 258 45 30 chr4 150757619 150757751 -51570596 - MIR SINE MIR -121 141 8 221 235 25 25 chr4 150758393 150758512 -51569835 + (TTTG)n Simple_repeat Simple_repeat 2 120 0 458 277 71 7 chr4 150759495 150759650 -51568697 + MIR SINE MIR 49 213 -49 1086 206 102 48 chr4 150760359 150760801 -51567546 - MLT1D LTR MaLR -5 500 35 287 313 51 77 chr4 150761866 150762061 -51566286 - MIR SINE MIR -26 236 47 297 109 0 0 chr4 150762471 150762517 -51565830 + (TG)n Simple_repeat Simple_repeat 1 46 0 250 320 0 0 chr4 150762517 150762595 -51565752 + (CATG)n Simple_repeat Simple_repeat 1 78 0 24 32 0 0 chr4 150763960 150763991 -51564356 + AT_rich Low_complexity Low_complexity 1 31 0 2188 133 0 0 chr4 150764290 150764584 -51563763 + AluSx SINE Alu 1 294 -18 203 323 57 54 chr4 150764729 150764858 -51563489 - MIR SINE MIR -66 142 60 471 238 105 0 chr4 150768666 150768838 -51559509 + MLT1C LTR MaLR 278 467 0 544 252 77 67 chr4 150768838 150769136 -51559211 + MLT1C LTR MaLR 157 457 -10 704 296 88 56 chr4 150770416 150770874 -51557473 + L1M4c LINE L1 1022 1693 -1050 1829 130 4 4 chr4 150770874 150771127 -51557220 + AluSx SINE Alu 1 253 -59 763 198 12 0 chr4 150772096 150772258 -51556089 - L1MB3 LINE L1 -3 6180 6017 282 95 0 0 chr4 150774714 150774756 -51553591 + (TG)n Simple_repeat Simple_repeat 1 42 0 227 222 0 0 chr4 150774871 150774916 -51553431 + (TA)n Simple_repeat Simple_repeat 2 46 0 469 272 31 10 chr4 150774919 150775114 -51553233 - L1ME LINE L1 -349 5772 5574 304 247 0 14 chr4 150775815 150775961 -51552386 + (TG)n Simple_repeat Simple_repeat 1 144 0 439 236 6 6 chr4 150775993 150776171 -51552176 + (TG)n Simple_repeat Simple_repeat 2 179 0 215 250 0 9 chr4 150776185 150776297 -51552050 + (TG)n Simple_repeat Simple_repeat 2 112 0 483 182 0 19 chr4 150776322 150776476 -51551871 + (TG)n Simple_repeat Simple_repeat 2 152 0 582 186 0 22 chr4 150776503 150776686 -51551661 + (TG)n Simple_repeat Simple_repeat 1 179 0 246 276 71 10 chr4 150776751 150776849 -51551498 - HAL1 LINE L1 -1106 1401 1298 556 224 73 55 chr4 150776886 150777105 -51551242 + MLT1F1 LTR MaLR 69 291 -276 21 36 0 0 chr4 150777522 150777550 -51550797 + AT_rich Low_complexity Low_complexity 1 28 0 2564 59 7 0 chr4 150778557 150778861 -51549486 - AluY SINE Alu -5 306 1 1570 173 53 75 chr4 150778943 150779394 -51548953 - L1PA16 LINE L1 -9 6157 5717 300 232 14 0 chr4 150782186 150782255 -51546092 + Tigger3(Golem) DNA MER2_type 14 83 -2946 547 202 0 44 chr4 150782384 150782451 -51545896 + Tigger3(Golem) DNA MER2_type 2919 2981 -47 2459 108 42 3 chr4 150782451 150782812 -51545535 - THE1C LTR MaLR 0 375 1 547 202 0 44 chr4 150782812 150782858 -51545489 + Tigger3(Golem) DNA MER2_type 2981 3027 -1 189 0 0 0 chr4 150783053 150783074 -51545273 + (T)n Simple_repeat Simple_repeat 1 21 0 2172 101 4 0 chr4 150784320 150784598 -51543749 + AluSx SINE Alu 18 296 -16 532 260 4 13 chr4 150786474 150786950 -51541397 + (CA)n Simple_repeat Simple_repeat 1 471 0 5081 186 29 17 chr4 150787061 150788019 -51540328 + ERVL LTR ERVL 2401 3374 -2390 2150 135 3 3 chr4 150788019 150788316 -51540031 - AluSx SINE Alu -15 297 1 5081 186 29 17 chr4 150788316 150788378 -51539969 + ERVL LTR ERVL 3374 3434 -2330 977 111 42 0 chr4 150788374 150788518 -51539829 + ERVL LTR ERVL 2323 2472 -3292 * 857 149 7 0 chr4 150788524 150788665 -51539682 - ERVL LTR ERVL -1216 4548 4407 * 4809 175 36 8 chr4 150788663 150789583 -51538764 + ERVL LTR ERVL 3439 4384 -1380 186 103 0 0 chr4 150791075 150791104 -51537243 + (TG)n Simple_repeat Simple_repeat 2 30 0 1484 201 80 3 chr4 150791129 150791468 -51536879 - MLT2D LTR ERVL -49 365 1 180 217 83 33 chr4 150791830 150791890 -51536457 + L2 LINE L2 1363 1425 -1889 226 274 181 14 chr4 150792064 150792279 -51536068 + L1ME3A LINE L1 5906 6156 -14 225 286 0 0 chr4 150792525 150792588 -51535759 + L1M4 LINE L1 3936 3998 -2148 * 248 309 64 43 chr4 150792568 150792756 -51535591 + L1P LINE L1 4053 4244 -1902 198 269 15 15 chr4 150796100 150796167 -51532180 + L2 LINE L2 2989 3055 -217 273 290 124 21 chr4 150798997 150799142 -51529205 + MIR SINE MIR 16 175 -87 1832 168 17 0 chr4 150799514 150799805 -51528542 + AluJo SINE Alu 1 296 -16 184 224 40 40 chr4 150800531 150800607 -51527740 - MIR3 SINE MIR -4 204 129 2230 141 72 3 chr4 150800631 150801006 -51527341 + MER57A LTR ERV1 3 403 0 365 172 9 103 chr4 150801729 150801845 -51526502 - L1M4 LINE L1 -1460 4686 4582 1399 235 20 73 chr4 150801974 150802511 -51525836 + L1M4 LINE L1 4765 5273 -873 2164 106 3 3 chr4 150802836 150803129 -51525218 + AluSx SINE Alu 3 295 -17 253 130 0 37 chr4 150803902 150803956 -51524391 - L1MB7 LINE L1 -14 6170 6119 918 158 144 77 chr4 150803965 150804059 -51524288 + AluJo SINE Alu 54 140 -172 2211 108 0 7 chr4 150804059 150804356 -51523991 + AluY SINE Alu 1 295 -16 918 158 144 77 chr4 150804356 150804483 -51523864 + AluJo SINE Alu 140 290 -22 432 0 0 0 chr4 150804484 150804532 -51523815 + (TG)n Simple_repeat Simple_repeat 2 49 0 560 206 59 95 chr4 150805801 150806140 -51522207 + MLT1C LTR MaLR 23 411 -56 219 382 0 29 chr4 150806970 150807038 -51521309 + A-rich Low_complexity Low_complexity 2 67 0 1047 26 0 0 chr4 150807482 150807599 -51520748 + AluY SINE Alu 184 300 -11 263 204 9 80 chr4 150808061 150808220 -51520127 - HsTC2 DNA Tc2 -32 1866 5 263 230 10 10 chr4 150808491 150808591 -51519756 + HAL1 LINE L1 94 193 -2314 321 327 45 5 chr4 150808648 150808847 -51519500 + HAL1 LINE L1 696 902 -1605 205 310 0 40 chr4 150809148 150809322 -51519025 + GA-rich Low_complexity Low_complexity 3 169 0 228 315 0 33 chr4 150809431 150809612 -51518735 + GA-rich Low_complexity Low_complexity 4 178 0 430 248 88 0 chr4 150809774 150809887 -51518460 + MER5B DNA MER1_type 51 173 -5 4661 57 10 12 chr4 150810625 150811217 -51517130 - LTR10C LTR ERV1 0 591 1 206 159 34 80 chr4 150811938 150812026 -51516321 + (CCCCG)n Simple_repeat Simple_repeat 1 84 0 1239 174 25 106 chr4 150813507 150813829 -51514518 + AluJo SINE Alu 1 296 -6 188 317 167 35 chr4 150814927 150815154 -51513193 - L2 LINE L2 -15 3257 3001 464 113 28 0 chr4 150815181 150815252 -51513095 + Charlie3 DNA MER1_type 102 174 -2536 1755 177 3 7 chr4 150815445 150815733 -51512614 + AluSx SINE Alu 2 288 -24 184 29 29 29 chr4 150815736 150815770 -51512577 + (TTAAA)n Simple_repeat Simple_repeat 3 36 0 2708 180 89 73 chr4 150816101 150817474 -51510873 - L1MB2 LINE L1 -2 6169 4778 2290 96 3 3 chr4 150819738 150820031 -51508316 - AluSx SINE Alu -19 293 1 21 0 0 0 chr4 150822718 150822739 -51505608 + AT_rich Low_complexity Low_complexity 1 21 0 194 138 69 0 chr4 150823313 150823371 -51504976 + GA-rich Low_complexity Low_complexity 3 64 0 2096 92 3 11 chr4 150824358 150824642 -51503705 - AluSx SINE Alu -7 305 24 463 353 47 35 chr4 150824706 150825023 -51503324 + L1ME LINE L1 5498 5818 -303 363 261 17 26 chr4 150825489 150825604 -51502743 + MIR SINE MIR 90 203 -59 2166 103 0 34 chr4 150825606 150825926 -51502421 + AluSg SINE Alu 1 309 -1 199 345 29 65 chr4 150826022 150826161 -51502186 - L2 LINE L2 0 3272 3139 1556 148 0 16 chr4 150827457 150827701 -51500646 + AluJb SINE Alu 58 297 -15 2118 132 13 0 chr4 150828382 150828686 -51499661 - AluSx SINE Alu -4 308 1 211 326 33 11 chr4 150829414 150829506 -51498841 - L2 LINE L2 -2 3270 3177 209 271 165 0 chr4 150829620 150829705 -51498642 + MIR SINE MIR 62 160 -102 1847 97 34 22 chr4 150830387 150830656 -51497691 - AluSx SINE Alu -6 306 35 180 312 13 39 chr4 150833232 150833309 -51495038 - MIR SINE MIR -70 192 118 592 249 62 21 chr4 150835582 150835775 -51492572 + MER3 DNA MER1_type 2 202 -7 247 180 60 90 chr4 150838665 150838832 -51489515 + (CCCCAG)n Simple_repeat Simple_repeat 4 165 0 211 219 83 53 chr4 150839177 150839346 -51489001 + (CCCCAG)n Simple_repeat Simple_repeat 4 177 0 307 193 82 53 chr4 150839395 150839566 -51488781 + (CCCCAG)n Simple_repeat Simple_repeat 4 179 0 796 245 28 80 chr4 150839985 150840282 -51488065 + L1M4 LINE L1 4728 5039 -1107 752 44 80 80 chr4 150840282 150840419 -51487928 - MER85 DNA T2_type -2 137 1 796 245 28 80 chr4 150840419 150840487 -51487860 + L1M4 LINE L1 5039 5071 -1075 1633 178 56 66 chr4 150840487 150840881 -51487466 + MLT1B LTR MaLR 1 390 0 796 245 28 80 chr4 150840881 150840938 -51487409 + L1M4 LINE L1 5071 5129 -1017 38 85 0 0 chr4 150840997 150841091 -51487256 + AT_rich Low_complexity Low_complexity 1 94 0 1904 149 0 36 chr4 150841252 150841560 -51486787 + AluJb SINE Alu 1 297 -15 5352 159 43 9 chr4 150841638 150843448 -51484899 + L1MA9 LINE L1 4446 6312 0 221 294 110 28 chr4 150843734 150843843 -51484504 + L2 LINE L2 3195 3312 -1 598 156 0 10 chr4 150843935 150844031 -51484316 + FLAM_C SINE Alu 36 130 -13 299 245 101 58 chr4 150844493 150844632 -51483715 - L2 LINE L2 -189 3083 2939 283 29 0 0 chr4 150845210 150845244 -51483103 - U2 snRNA snRNA -154 34 1 1575 104 37 29 chr4 150845624 150845865 -51482482 - AluSq SINE Alu -21 292 50 336 119 0 0 chr4 150849082 150849141 -51479206 + (TG)n Simple_repeat Simple_repeat 2 60 0 716 290 88 33 chr4 150851160 150851633 -51476714 - L2 LINE L2 -262 3051 2560 304 250 13 0 chr4 150851645 150851721 -51476626 + MLT2B2 LTR ERVL 365 441 -74 5236 220 72 23 chr4 150851722 150853004 -51475343 + ERVL-B2 LTR ERVL 18 1361 -4403 2670 211 20 7 chr4 150853031 150853582 -51474765 - ERVL LTR ERVL -3721 2043 1486 500 278 98 39 chr4 150860876 150861081 -51467266 + MIR SINE MIR 28 244 -18 1930 110 79 7 chr4 150861121 150861411 -51466936 + AluSx SINE Alu 2 312 0 713 73 0 9 chr4 150865107 150865217 -51463130 + (TTCC)n Simple_repeat Simple_repeat 4 112 0 2023 138 14 0 chr4 150865218 150865514 -51462833 - AluSx SINE Alu -12 300 1 24 0 0 0 chr4 150867382 150867406 -51460941 + AT_rich Low_complexity Low_complexity 1 24 0 2187 119 82 20 chr4 150868058 150868401 -51459946 + THE1B LTR MaLR 1 364 0 198 167 0 0 chr4 150869901 150869937 -51458410 + (TG)n Simple_repeat Simple_repeat 1 36 0 1849 161 111 40 chr4 150871896 150872293 -51456054 - MSTA LTR MaLR -2 426 2 415 262 94 37 chr4 150873945 150874136 -51454211 - L1ME3A LINE L1 -154 6016 5815 2043 86 7 7 chr4 150874148 150874426 -51453921 - AluSg SINE Alu -32 278 1 321 234 145 14 chr4 150874540 150874680 -51453667 - L1ME3A LINE L1 -390 5772 5596 542 248 99 25 chr4 150874692 150874894 -51453453 - L1ME2 LINE L1 -20 6144 5928 1131 249 27 24 chr4 150874958 150875287 -51453060 - L1ME2 LINE L1 -393 5771 5442 365 325 45 13 chr4 150875568 150875725 -51452622 + MIR SINE MIR 82 243 -19 975 144 53 21 chr4 150876433 150876620 -51451727 + L1MA7 LINE L1 6092 6284 -7 2072 96 0 21 chr4 150876798 150877078 -51451269 + AluSq SINE Alu 23 296 -17 330 230 100 0 chr4 150877594 150877694 -51450653 - L1ME4a LINE L1 -1 6120 6011 1855 123 78 39 chr4 150877798 150878157 -51450190 - THE1C LTR MaLR -2 373 1 35 83 0 0 chr4 150878766 150878850 -51449497 + AT_rich Low_complexity Low_complexity 1 84 0 276 292 183 7 chr4 150878926 150879063 -51449284 - MIR SINE MIR -15 247 87 201 246 70 18 chr4 150879129 150879186 -51449161 + MIR SINE MIR 14 73 -189 11345 164 68 31 chr4 150881329 150883782 -51444565 + L1MB3 LINE L1 29 2559 -3823 8638 223 26 30 chr4 150883764 150885092 -51443255 + L1MB3 LINE L1 3178 4509 -1910 * 204 40 0 0 chr4 150885092 150885117 -51443230 + (CA)n Simple_repeat Simple_repeat 2 26 0 8638 223 26 30 chr4 150885117 150887037 -51441310 + L1MB3 LINE L1 4509 6411 -8 2846 206 60 25 chr4 150887034 150887756 -51440591 + L1MB8 LINE L1 5418 6164 -14 * 269 319 11 21 chr4 150888403 150888497 -51439850 - MIR SINE MIR -104 158 66 206 219 0 0 chr4 150890623 150890664 -51437683 + (CA)n Simple_repeat Simple_repeat 2 42 0 1278 206 109 29 chr4 150890830 150891277 -51437070 - L1MD3 LINE L1 -187 7808 7138 1202 213 18 32 chr4 150891429 150891711 -51436636 + L1MA10 LINE L1 6050 6327 -7 814 277 79 24 chr4 150891728 150892020 -51436327 - MER69 DNA AcHobo -2217 309 2 187 326 165 9 chr4 150892300 150892518 -51435829 + L2 LINE L2 2138 2389 -925 4660 68 0 0 chr4 150892644 150893199 -51435148 + L1PA5 LINE L1 5585 6139 -15 306 247 24 12 chr4 150893199 150893284 -51435063 - L1MC4 LINE L1 -1342 6700 6615 2650 216 67 4 chr4 150893311 150893986 -51434361 - L1M4 LINE L1 -1047 5099 4383 266 308 85 57 chr4 150894136 150894347 -51434000 - L1M4b LINE L1 -6631 228 12 1073 193 90 13 chr4 150896080 150896381 -51431966 - MER33 DNA MER1_type 0 324 1 217 367 56 37 chr4 150897033 150897248 -51431099 + MIR SINE MIR 20 238 -24 431 361 85 56 chr4 150898301 150899290 -51429057 + L2 LINE L2 2244 3266 -6 22 0 0 0 chr4 150899569 150899591 -51428756 + AT_rich Low_complexity Low_complexity 1 22 0 288 154 0 0 chr4 150901593 150901645 -51426702 + L1MC4 LINE L1 6652 6703 -1339 408 40 0 0 chr4 150901745 150901795 -51426552 + (CA)n Simple_repeat Simple_repeat 2 51 0 2368 96 3 0 chr4 150905076 150905378 -51422969 + AluSp SINE Alu 1 303 -10 320 250 276 0 chr4 150905699 150905855 -51422492 + MIR SINE MIR 2 200 -62 2805 285 183 22 chr4 150905960 150907562 -51420785 + L2 LINE L2 1459 3312 -1 323 271 106 29 chr4 150907604 150907774 -51420573 - MIR3 SINE MIR -10 198 16 2104 99 0 4 chr4 150907954 150908227 -51420120 + AluSp SINE Alu 39 310 -3 295 309 95 32 chr4 150908569 150908695 -51419652 - L2 LINE L2 -5 3267 3134 611 325 69 38 chr4 150908726 150909046 -51419301 + MER102a DNA MER1_type 1 330 0 434 236 171 97 chr4 150909060 150909184 -51419163 - MER45C DNA AcHobo -639 942 829 2300 86 0 16 chr4 150909184 150909498 -51418849 - AluY SINE Alu 0 311 3 434 236 171 97 chr4 150909498 150909589 -51418758 - MER45C DNA AcHobo -752 829 711 985 216 9 31 chr4 150909661 150909883 -51418464 - MER45C DNA AcHobo -722 231 15 8260 23 0 0 chr4 150910291 150911950 -51416397 + L1PA3 LINE L1 4494 6152 -3 478 61 0 19 chr4 150911888 150911960 -51416387 + L1PA3 LINE L1 6091 6168 0 559 291 101 15 chr4 150912014 150912213 -51416134 + MIR SINE MIR 45 260 -2 205 250 0 17 chr4 150912537 150912597 -51415750 + L2 LINE L2 3255 3313 0 189 0 0 0 chr4 150912706 150912727 -51415620 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2037 121 7 0 chr4 150912730 150913010 -51415337 - AluSx SINE Alu -30 282 1 634 180 8 16 chr4 150913252 150913380 -51414967 - AluJb SINE Alu -185 127 1 872 332 143 53 chr4 150913442 150914781 -51413566 + L3 LINE CR1 114 1573 -4 879 155 63 155 chr4 150915842 150916158 -51412189 + L1MD3 LINE L1 6735 7021 -974 494 151 12 0 chr4 150916164 150916250 -51412097 + L1MA6 LINE L1 6135 6221 -79 314 247 0 0 chr4 150916277 150916350 -51411997 + MER34 LTR ERV1 22 94 -448 940 219 83 73 chr4 150916410 150916918 -51411429 + LTR48B LTR ERV1 75 639 -5 379 143 39 0 chr4 150916918 150916995 -51411352 + L1MA6 LINE L1 6221 6300 0 473 168 32 0 chr4 150917007 150917102 -51411245 + L1MD3 LINE L1 7006 7103 -892 342 0 0 0 chr4 150917632 150917670 -51410677 + (CA)n Simple_repeat Simple_repeat 2 39 0 218 189 0 0 chr4 150918613 150918650 -51409697 + (CCTA)n Simple_repeat Simple_repeat 2 38 0 998 186 10 10 chr4 150919824 150920018 -51408329 - L1MB3 LINE L1 -60 6123 5930 429 333 89 6 chr4 150920024 150920192 -51408155 + MER5A DNA MER1_type 7 188 -1 219 36 0 0 chr4 150921633 150921661 -51406686 + (TG)n Simple_repeat Simple_repeat 1 28 0 1545 148 13 4 chr4 150921676 150921913 -51406434 - AluJb SINE Alu -68 244 6 216 240 0 20 chr4 150922631 150922681 -51405666 + GA-rich Low_complexity Low_complexity 2 50 0 315 289 100 47 chr4 150922718 150922908 -51405439 - MIR SINE MIR -53 209 10 186 103 0 0 chr4 150922945 150922974 -51405373 + (CAAAAA)n Simple_repeat Simple_repeat 4 32 0 231 204 19 0 chr4 150924682 150924736 -51403611 + (CA)n Simple_repeat Simple_repeat 1 55 0 240 323 15 0 chr4 150925230 150925295 -51403052 - L2 LINE L2 -3 3269 3204 2479 48 7 7 chr4 150925465 150925774 -51402573 - AluY SINE Alu -1 310 2 924 188 18 6 chr4 150925990 150926160 -51402187 - AluJo SINE Alu -5 307 136 218 91 45 23 chr4 150926999 150927043 -51401304 + (CATTA)n Simple_repeat Simple_repeat 1 45 0 291 389 37 56 chr4 150928179 150928341 -51400006 - L2 LINE L2 0 3272 3114 246 136 0 0 chr4 150928412 150928456 -51399891 + (TA)n Simple_repeat Simple_repeat 2 45 0 1097 30 23 0 chr4 150928952 150929084 -51399263 - MER85 DNA T2_type -4 135 1 199 279 33 16 chr4 150931792 150931853 -51396494 + L2 LINE L2 3190 3251 -21 202 364 0 0 chr4 150932024 150932079 -51396268 + L2 LINE L2 3115 3169 -103 245 267 83 50 chr4 150932519 150932639 -51395708 - MIR SINE MIR -36 226 103 241 33 0 0 chr4 150934367 150934397 -51393950 - HSMAR1 DNA Mariner -1257 30 1 367 311 108 14 chr4 150935173 150935321 -51393026 - MIR3 SINE MIR -4 204 43 2668 162 115 47 chr4 150936510 150937170 -51391177 + MER44D DNA MER2_type 1 705 0 740 177 0 64 chr4 150938152 150938293 -51390054 - AluJo SINE Alu -176 136 5 202 358 146 25 chr4 150938294 150938774 -51389573 + L2 LINE L2 2037 2574 -740 1148 240 37 44 chr4 150939127 150939732 -51388615 - L1ME LINE L1 -508 5727 4966 6354 89 4 8 chr4 150939732 150940976 -51387371 + L1PA10 LINE L1 4926 6166 -2 1148 240 37 44 chr4 150940976 150941085 -51387262 - L1ME LINE L1 -1269 4966 4858 1017 260 139 44 chr4 150941097 150941694 -51386653 - L1ME LINE L1 -4486 1910 1257 * 1954 284 48 11 chr4 150941689 150942351 -51385996 - L1ME LINE L1 -5495 901 215 376 238 123 0 chr4 150942361 150942483 -51385864 - L1ME LINE L1 -6223 173 37 421 236 30 138 chr4 150943918 150944121 -51384226 + MIR SINE MIR 82 262 0 373 309 65 77 chr4 150945624 150945870 -51382477 + MIR SINE MIR 20 262 0 406 272 173 0 chr4 150947621 150947783 -51380564 + MIR SINE MIR 57 246 -16 1353 192 11 38 chr4 150948037 150948324 -51380023 - AluJo SINE Alu -18 294 16 387 0 0 0 chr4 150949528 150949571 -51378776 + (TTA)n Simple_repeat Simple_repeat 3 45 0 1083 66 0 0 chr4 150949571 150949708 -51378639 - L1PA5 LINE L1 -18 6136 6000 621 0 0 0 chr4 150949708 150949778 -51378569 + L1P LINE L1 4567 4636 -1510 26 0 0 0 chr4 150951073 150951099 -51377248 + AT_rich Low_complexity Low_complexity 1 26 0 914 266 211 16 chr4 150951289 150951778 -51376569 + L2 LINE L2 2071 2654 -660 2016 139 3 3 chr4 150952604 150952906 -51375441 + AluSx SINE Alu 1 302 -10 546 272 0 23 chr4 150953523 150953696 -51374651 + L1MB8 LINE L1 6010 6178 0 432 269 62 51 chr4 150953897 150954154 -51374193 - MIR SINE MIR -2 260 1 26 0 0 0 chr4 150954245 150954271 -51374076 + AT_rich Low_complexity Low_complexity 1 26 0 225 0 0 0 chr4 150955061 150955086 -51373261 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 26 0 0 0 chr4 150955353 150955379 -51372968 + AT_rich Low_complexity Low_complexity 1 26 0 270 324 156 35 chr4 150955515 150955688 -51372659 + MIR3 SINE MIR 6 199 -9 2383 73 3 0 chr4 150955700 150956002 -51372345 + AluY SINE Alu 1 303 -8 23 33 0 0 chr4 150957528 150957558 -51370789 + AT_rich Low_complexity Low_complexity 1 30 0 278 349 33 3 chr4 150958041 150958205 -51370142 - L2 LINE L2 -53 3219 3009 273 167 0 0 chr4 150958804 150958858 -51369489 + L1MC4 LINE L1 6653 6706 -1336 2406 77 0 0 chr4 150959033 150959343 -51369004 + AluY SINE Alu 1 310 -1 488 264 53 19 chr4 150959375 150959583 -51368764 + L1MC4a LINE L1 5636 5850 -1958 885 275 39 0 chr4 150959635 150959864 -51368483 - MIR SINE MIR 0 262 25 244 175 16 16 chr4 150960920 150960933 -51367414 + (TA)n Simple_repeat Simple_repeat 1 13 -50 189 74 0 0 chr4 150960933 150960960 -51367387 + (TG)n Simple_repeat Simple_repeat 2 28 0 244 175 16 16 chr4 150960960 150961009 -51367338 + (TA)n Simple_repeat Simple_repeat 12 63 0 207 69 0 0 chr4 150961009 150961038 -51367309 + (CA)n Simple_repeat Simple_repeat 2 30 0 1443 186 4 18 chr4 150961038 150961318 -51367029 - AluJb SINE Alu -20 292 17 25 0 0 0 chr4 150961572 150961597 -51366750 + AT_rich Low_complexity Low_complexity 1 25 0 2428 87 0 0 chr4 150961640 150961949 -51366398 + AluY SINE Alu 1 309 -2 200 139 0 0 chr4 150962650 150962686 -51365661 - MER5B DNA MER1_type -142 36 1 180 135 0 0 chr4 150963618 150963655 -51364692 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 339 25 0 0 chr4 150964152 150964192 -51364155 + (TG)n Simple_repeat Simple_repeat 2 41 0 709 304 78 20 chr4 150964492 150964788 -51363559 + L1MDa LINE L1 27 339 -6201 452 244 0 113 chr4 150965083 150965312 -51363035 + L1MD2 LINE L1 6013 6215 -144 986 123 19 90 chr4 150965574 150965785 -51362562 + L1PA15 LINE L1 5970 6165 0 288 294 222 0 chr4 150968145 150968271 -51360076 + MIR SINE MIR 2 155 -107 948 293 79 9 chr4 150968503 150968545 -51359802 - MER69 DNA AcHobo -2160 366 328 2675 149 44 23 chr4 150968545 150969070 -51359277 + L1MA10 LINE L1 5798 6333 -1 948 293 79 9 chr4 150969070 150969368 -51358979 - MER69 DNA AcHobo -2198 328 2 282 358 138 18 chr4 150969648 150970106 -51358241 + L2 LINE L2 2138 2650 -664 2254 76 0 3 chr4 150970311 150970601 -51357746 + AluSq SINE Alu 24 312 -1 377 352 50 6 chr4 150971142 150971324 -51357023 - MIR SINE MIR -1 261 72 21 0 0 0 chr4 150971583 150971604 -51356743 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 150972647 150972674 -51355673 + AT_rich Low_complexity Low_complexity 1 27 0 206 219 0 0 chr4 150972787 150972828 -51355519 + (CA)n Simple_repeat Simple_repeat 2 42 0 1248 222 93 25 chr4 150972994 150973941 -51354406 - L1MD3 LINE L1 -187 7808 6616 22 35 0 0 chr4 150974016 150974045 -51354302 + AT_rich Low_complexity Low_complexity 1 29 0 188 365 9 43 chr4 150975986 150976101 -51352246 - MIR3 SINE MIR -22 186 76 24 77 0 0 chr4 150976919 150976971 -51351376 + AT_rich Low_complexity Low_complexity 1 52 0 320 284 94 16 chr4 150977479 150977606 -51350741 - MIR SINE MIR -73 189 53 1375 199 89 43 chr4 150978010 150978402 -51349945 + MLT1C LTR MaLR 58 467 0 1426 225 86 50 chr4 150979383 150979765 -51348582 - MSTD LTR MaLR 0 396 1 3794 170 27 31 chr4 150980060 150980867 -51347480 - L1MA10 LINE L1 -3 6331 5528 26 0 0 0 chr4 150982610 150982636 -51345711 + AT_rich Low_complexity Low_complexity 1 26 0 25 51 0 0 chr4 150982911 150982950 -51345397 + AT_rich Low_complexity Low_complexity 1 39 0 2456 88 0 0 chr4 150982959 150983267 -51345080 + AluSx SINE Alu 1 308 -4 860 307 97 71 chr4 150985759 150987021 -51341326 - MERVL LTR ERVL -178 5307 4014 823 338 65 26 chr4 150987072 150987875 -51340472 - MERVL LTR ERVL -1712 3942 3103 2075 121 3 0 chr4 150988004 150988301 -51340046 - AluSx SINE Alu -14 298 1 264 299 46 11 chr4 150988539 150988626 -51339721 - MIR3 SINE MIR 0 208 119 216 138 35 35 chr4 150988730 150988788 -51339559 + (CAAA)n Simple_repeat Simple_repeat 3 60 0 2111 128 0 0 chr4 150989090 150989371 -51338976 + AluY SINE Alu 31 311 0 1043 196 58 128 chr4 150991075 150991483 -51336864 + MLT2D LTR ERVL 1 377 -37 261 0 0 0 chr4 150991483 150991512 -51336835 + (TG)n Simple_repeat Simple_repeat 2 30 0 1043 196 58 128 chr4 150991512 150991548 -51336799 + MLT2D LTR ERVL 377 414 0 445 225 150 0 chr4 150993402 150993522 -51334825 - MER3 DNA MER1_type -65 144 7 209 347 32 21 chr4 150993544 150993639 -51334708 - MIR SINE MIR -94 114 19 840 293 19 35 chr4 150993871 150994098 -51334249 - MIR SINE MIR -5 257 33 1784 166 15 63 chr4 150994098 150994508 -51333839 - MLT1B LTR MaLR 0 390 1 840 293 19 35 chr4 150994508 150994536 -51333811 - MIR SINE MIR -229 33 6 2264 83 33 3 chr4 150994568 150994870 -51333477 + AluY SINE Alu 1 311 0 924 226 5 19 chr4 150995124 150995336 -51333011 + MER3 DNA MER1_type 1 209 0 387 286 139 46 chr4 150995360 150995398 -51332949 + L2 LINE L2 2354 2387 -927 2123 141 0 0 chr4 150995398 150995710 -51332637 - AluSx SINE Alu 0 312 1 387 286 139 46 chr4 150995710 150995951 -51332396 + L2 LINE L2 2387 2659 -655 244 333 0 13 chr4 150996007 150996082 -51332265 - L2 LINE L2 -15 3298 3225 458 236 35 49 chr4 150996476 150996620 -51331727 - MIR SINE MIR -74 188 47 282 29 0 0 chr4 150996643 150996678 -51331669 + (CA)n Simple_repeat Simple_repeat 1 35 0 31 0 0 0 chr4 150997802 150997833 -51330514 + AT_rich Low_complexity Low_complexity 1 31 0 1634 214 64 77 chr4 150998401 150998961 -51329386 + MLT2B3 LTR ERVL 2 554 0 285 109 0 0 chr4 150998966 150999012 -51329335 + (TA)n Simple_repeat Simple_repeat 2 47 0 217 217 0 0 chr4 150999664 150999710 -51328637 + (CA)n Simple_repeat Simple_repeat 2 47 0 578 386 59 27 chr4 151000104 151000853 -51327494 - L2 LINE L2 -652 2662 1890 2188 126 10 0 chr4 151001027 151001336 -51327011 + AluSx SINE Alu 1 312 0 34 65 0 0 chr4 151002149 151002211 -51326136 + AT_rich Low_complexity Low_complexity 1 62 0 319 307 39 0 chr4 151002419 151002572 -51325775 + L1ME LINE L1 5536 5694 -427 35 54 0 0 chr4 151002580 151002636 -51325711 + AT_rich Low_complexity Low_complexity 1 56 0 310 216 0 27 chr4 151003529 151003603 -51324744 - L1ME4a LINE L1 -83 6038 5967 22 0 0 0 chr4 151003607 151003629 -51324718 + AT_rich Low_complexity Low_complexity 1 22 0 2124 119 10 0 chr4 151003812 151004122 -51324225 + AluSp SINE Alu 1 313 0 306 257 2 22 chr4 151004138 151004236 -51324111 + HAL1b LINE L1 1257 6116 -5 290 258 47 74 chr4 151004876 151005066 -51323281 - Tigger8 DNA MER2_type -55 611 427 278 276 60 0 chr4 151005107 151005223 -51323124 - Tigger8 DNA MER2_type -356 310 188 843 214 17 11 chr4 151005407 151005585 -51322762 + MER58A DNA MER1_type 45 223 -1 5647 118 53 18 chr4 151005666 151006579 -51321768 + Tigger1 DNA MER2_type 13 957 -1461 231 205 0 0 chr4 151006591 151006630 -51321717 + Tigger1 DNA MER2_type 2377 2415 -3 297 118 0 0 chr4 151006631 151006682 -51321665 + (TG)n Simple_repeat Simple_repeat 2 52 0 222 183 17 17 chr4 151007222 151007282 -51321065 + (TTATA)n Simple_repeat Simple_repeat 1 60 0 317 358 99 0 chr4 151007301 151007522 -51320825 - HAL1b LINE L1 -706 642 400 22 80 0 0 chr4 151008774 151008824 -51319523 + AT_rich Low_complexity Low_complexity 1 50 0 2315 74 0 14 chr4 151008873 151009169 -51319178 - AluY SINE Alu -15 296 5 937 151 62 0 chr4 151009232 151009424 -51318923 - L1MA4 LINE L1 -5 6295 6092 576 206 132 25 chr4 151010806 151011091 -51317256 - MER33 DNA MER1_type -23 340 1 541 167 129 8 chr4 151011102 151011257 -51317090 + L1MA8 LINE L1 6126 6287 -4 259 361 16 16 chr4 151012602 151012724 -51315623 + L2 LINE L2 756 877 -2437 234 288 76 42 chr4 151012760 151012878 -51315469 + HAL1 LINE L1 1482 1603 -904 1177 193 127 29 chr4 151013513 151013788 -51314559 - AluJb SINE Alu 0 302 1 325 308 49 114 chr4 151016042 151016409 -51311938 + L2 LINE L2 2894 3236 -36 216 0 0 0 chr4 151017346 151017370 -51310977 + (TTA)n Simple_repeat Simple_repeat 1 24 0 2058 130 9 6 chr4 151017383 151017722 -51310625 - L1PA7 LINE L1 -20 6134 5795 255 203 86 109 chr4 151018366 151018414 -51309933 - MIR SINE MIR -17 245 197 405 0 0 0 chr4 151018414 151018459 -51309888 + (TA)n Simple_repeat Simple_repeat 1 45 0 2537 46 0 10 chr4 151018459 151018765 -51309582 - AluY SINE Alu -6 305 3 255 203 86 109 chr4 151018765 151018843 -51309504 - MIR SINE MIR -63 199 121 2230 100 3 7 chr4 151018993 151019303 -51309044 - AluSc SINE Alu 0 309 1 2807 236 59 24 chr4 151019764 151020759 -51307588 - L1ME2 LINE L1 -2 6162 5127 3167 152 26 5 chr4 151020792 151021358 -51306989 - L1MB1 LINE L1 -4 6164 5587 1972 137 32 59 chr4 151021924 151022416 -51305931 + L1MA7 LINE L1 5023 5498 -814 2073 102 10 7 chr4 151022416 151022721 -51305626 + AluY SINE Alu 1 306 -5 1972 137 32 59 chr4 151022721 151022866 -51305481 + L1MA7 LINE L1 5498 5645 -667 2528 121 69 0 chr4 151022866 151023272 -51305075 - MER57B LTR ERV1 0 434 1 1285 77 221 22 chr4 151023272 151023494 -51304853 - MER57B-int LTR ERV1 0 7537 7272 769 115 16 8 chr4 151023494 151023616 -51304731 - LTR54B LTR ERV1 -371 127 5 25347 116 49 22 chr4 151023618 151025243 -51303104 - MER57B-int LTR ERV1 -392 7145 5565 1866 125 7 17 chr4 151025243 151025584 -51302763 - AluSq SINE Alu 0 338 1 25347 116 49 22 chr4 151025584 151027587 -51300760 - MER57B-int LTR ERV1 -1972 5565 3617 1951 156 3 0 chr4 151027587 151027889 -51300458 - AluSg SINE Alu -7 303 1 25347 116 49 22 chr4 151027889 151028976 -51299371 - MER57B-int LTR ERV1 -3920 3617 648 2457 119 44 18 chr4 151028973 151029361 -51298986 - MER57B-int LTR ERV1 -4616 1330 933 * 4292 119 22 3 chr4 151029375 151030006 -51298341 - MER57B-int LTR ERV1 -6874 663 21 3004 145 66 45 chr4 151030006 151030026 -51298321 + L1MA7 LINE L1 5629 5647 -644 2746 146 5 0 chr4 151030026 151030458 -51297889 - MER57B LTR ERV1 0 434 1 3004 145 66 45 chr4 151030458 151031043 -51297304 + L1MA7 LINE L1 5647 6247 -44 25 75 0 0 chr4 151031062 151031115 -51297232 + AT_rich Low_complexity Low_complexity 1 53 0 3641 91 17 16 chr4 151031487 151032177 -51296170 + L1PA13 LINE L1 5390 6162 -1 2129 139 0 54 chr4 151032209 151032577 -51295770 + MER7A DNA MER2_type 1 346 0 244 336 25 0 chr4 151033688 151033810 -51294537 + L1MC3 LINE L1 3767 3891 -2255 307 221 88 81 chr4 151034130 151034266 -51294081 + L1MC4 LINE L1 6569 6705 -1337 * 632 319 71 62 chr4 151034262 151034338 -51294009 + L1MC3 LINE L1 4383 4457 -1689 2046 139 7 0 chr4 151034338 151034633 -51293714 - AluSx SINE Alu -15 297 1 632 319 71 62 chr4 151034633 151035262 -51293085 + L1MC3 LINE L1 4457 5094 -1052 650 273 94 57 chr4 151035430 151035988 -51292359 + L1MC3 LINE L1 5318 5823 -360 24 53 0 0 chr4 151036245 151036283 -51292064 + AT_rich Low_complexity Low_complexity 1 38 0 456 290 135 26 chr4 151038597 151038790 -51289557 + MIR SINE MIR 6 219 -43 21 36 0 0 chr4 151039689 151039717 -51288630 + AT_rich Low_complexity Low_complexity 1 28 0 552 277 117 46 chr4 151040932 151041300 -51287047 - MLT1L LTR MaLR -45 570 177 550 299 16 16 chr4 151042558 151042742 -51285605 + MIR SINE MIR 14 197 -65 27 49 0 0 chr4 151043089 151043130 -51285217 + AT_rich Low_complexity Low_complexity 1 41 0 951 233 36 24 chr4 151043156 151043405 -51284942 - MIR SINE MIR -6 256 5 6210 142 41 16 chr4 151044328 151046396 -51281951 - L1MA4 LINE L1 -17 6283 4157 2021 118 7 23 chr4 151046910 151047216 -51281131 - AluSx SINE Alu -11 301 1 1796 156 36 19 chr4 151047217 151047559 -51280788 - AluJb SINE Alu 0 312 1 225 94 0 0 chr4 151047834 151047866 -51280481 + (TCC)n Simple_repeat Simple_repeat 2 33 0 516 311 51 31 chr4 151049193 151049450 -51278897 + MIR SINE MIR 1 262 0 380 109 0 16 chr4 151049630 151049694 -51278653 + (CA)n Simple_repeat Simple_repeat 1 63 0 505 240 80 64 chr4 151049702 151050015 -51278332 + LTR33 LTR ERVL 204 521 0 806 194 120 71 chr4 151050521 151050887 -51277460 - LTR7 LTR ERV1 -38 412 29 24 53 0 0 chr4 151051082 151051120 -51277227 + AT_rich Low_complexity Low_complexity 1 38 0 329 275 17 0 chr4 151053412 151053532 -51274815 + (TA)n Simple_repeat Simple_repeat 2 123 0 2104 153 6 19 chr4 151053859 151054224 -51274123 - L1PA16 LINE L1 -15 6151 5792 216 373 34 91 chr4 151054717 151054980 -51273367 + L2 LINE L2 3015 3262 -10 27 62 0 0 chr4 151054988 151055036 -51273311 + AT_rich Low_complexity Low_complexity 1 48 0 316 308 116 29 chr4 151055137 151055309 -51273038 - L2 LINE L2 -124 3189 3003 242 269 195 40 chr4 151055329 151055478 -51272869 - MLT1J LTR MaLR -338 173 2 468 333 156 6 chr4 151055539 151055878 -51272469 - L2 LINE L2 -475 2839 2450 280 275 0 0 chr4 151056933 151057013 -51271334 + L3b LINE CR1 1307 1386 -197 520 258 44 39 chr4 151057448 151057630 -51270717 - MIR SINE MIR -60 202 20 199 202 234 32 chr4 151058017 151058111 -51270236 - MER5A DNA MER1_type -34 155 43 651 219 5 94 chr4 151058149 151058341 -51270006 - MER5B DNA MER1_type -3 175 1 200 314 0 29 chr4 151059139 151059209 -51269138 - MIR3 SINE MIR -1 207 140 2572 233 83 35 chr4 151059382 151060176 -51268171 - MER21B LTR ERV1 -12 851 20 407 225 12 12 chr4 151060197 151060277 -51268070 - MER21B LTR ERV1 -771 92 13 897 251 121 66 chr4 151061548 151062024 -51266323 + MLT1H LTR MaLR 1 543 -6 248 301 212 18 chr4 151062930 151063043 -51265304 - MIR3 SINE MIR -5 203 69 207 186 0 0 chr4 151063238 151063281 -51265066 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 29 28 0 0 chr4 151064353 151064389 -51263958 + AT_rich Low_complexity Low_complexity 1 36 0 846 247 136 35 chr4 151065386 151066052 -51262295 - LTR50 LTR ERVL 0 795 19 21 36 0 0 chr4 151067229 151067257 -51261090 + AT_rich Low_complexity Low_complexity 1 28 0 36 53 0 0 chr4 151069194 151069251 -51259096 + AT_rich Low_complexity Low_complexity 1 57 0 1300 112 24 0 chr4 151071986 151072192 -51256155 - L1PA13 LINE L1 -9 6154 5944 24 0 0 0 chr4 151072540 151072564 -51255783 + AT_rich Low_complexity Low_complexity 1 24 0 232 306 49 37 chr4 151072971 151073128 -51255219 - MIR SINE MIR -45 217 57 297 294 112 14 chr4 151074635 151074778 -51253569 - MIR SINE MIR -1 261 105 1762 226 40 91 chr4 151074778 151075374 -51252973 - MLT1E LTR MaLR -23 570 5 184 301 205 0 chr4 151075378 151075461 -51252886 - MIR SINE MIR -155 107 8 1785 170 0 28 chr4 151076148 151076466 -51251881 + AluJo SINE Alu 1 309 -3 1016 255 94 70 chr4 151077567 151078065 -51250282 - LTR33 LTR ERVL 0 521 12 2215 88 0 10 chr4 151078329 151078626 -51249721 + AluY SINE Alu 7 300 -11 357 81 72 9 chr4 151079064 151079175 -51249172 + (TA)n Simple_repeat Simple_repeat 1 118 0 933 320 72 6 chr4 151079176 151079825 -51248522 + L1ME3A LINE L1 5256 5947 -223 1036 241 180 109 chr4 151080012 151081030 -51247317 - MER52A LTR ERV1 0 1755 666 207 0 0 0 chr4 151081728 151081751 -51246596 + (T)n Simple_repeat Simple_repeat 1 23 0 2829 140 18 62 chr4 151081922 151082556 -51245791 + L1MA9 LINE L1 5182 5793 -519 238 320 0 13 chr4 151082556 151082631 -51245716 + (TATG)n Simple_repeat Simple_repeat 3 76 0 2566 157 51 8 chr4 151082631 151083140 -51245207 + L1MA9 LINE L1 5782 6312 0 529 339 71 0 chr4 151083486 151083654 -51244693 - MER5A DNA MER1_type -6 183 4 2269 82 0 22 chr4 151083822 151084138 -51244209 - AluY SINE Alu -2 309 1 333 378 7 7 chr4 151084171 151084306 -51244041 + MIR3 SINE MIR 55 189 -19 23 33 0 0 chr4 151084602 151084632 -51243715 + AT_rich Low_complexity Low_complexity 1 30 0 646 257 39 24 chr4 151085510 151085716 -51242631 - MER63A DNA MER1_type 0 210 2 288 200 0 0 chr4 151086291 151086351 -51241996 + (TG)n Simple_repeat Simple_repeat 1 60 0 25 0 0 0 chr4 151087014 151087039 -51241308 + AT_rich Low_complexity Low_complexity 1 25 0 392 295 210 17 chr4 151087276 151087707 -51240640 + L2 LINE L2 2619 3124 -189 1904 181 39 24 chr4 151087994 151088452 -51239895 - Charlie1b DNA MER1_type 0 523 59 270 295 53 79 chr4 151088921 151089111 -51239236 + MIR SINE MIR 2 186 -76 399 187 0 13 chr4 151089173 151089248 -51239099 + MER5B DNA MER1_type 105 178 0 366 325 95 0 chr4 151089884 151090010 -51238337 + MIR SINE MIR 20 157 -105 1775 171 31 34 chr4 151092544 151092931 -51235416 - MLT1B LTR MaLR -4 386 1 2531 63 0 0 chr4 151093116 151093416 -51234931 + AluY SINE Alu 2 301 -10 237 314 271 7 chr4 151093524 151093664 -51234683 - MER5A DNA MER1_type 0 189 13 659 181 10 137 chr4 151093905 151094109 -51234238 - MER5B DNA MER1_type 0 178 1 369 244 6 141 chr4 151094294 151094450 -51233897 + MER102b DNA MER1_type 202 336 -5 244 371 40 13 chr4 151094465 151094616 -51233731 + L3 LINE CR1 1416 1570 -7 208 328 0 0 chr4 151094824 151094882 -51233465 + L2 LINE L2 3245 3302 -11 5823 140 51 5 chr4 151094969 151096356 -51231991 + L1PB1 LINE L1 4700 6150 -1 337 293 43 88 chr4 151096362 151096445 -51231902 - MLT1J2 LTR MaLR -10 420 335 1993 233 71 35 chr4 151096445 151097047 -51231300 + MLT1E3 LTR MaLR 1 624 0 337 293 43 88 chr4 151097047 151097324 -51231023 - MLT1J2 LTR MaLR -95 335 63 211 146 36 18 chr4 151098563 151098618 -51229729 + CT-rich Low_complexity Low_complexity 4 59 0 188 233 47 0 chr4 151098768 151098811 -51229536 - MIR SINE MIR -133 129 85 243 297 90 108 chr4 151099651 151099974 -51228373 + L2 LINE L2 2915 3231 -41 22 35 0 0 chr4 151100255 151100284 -51228063 + AT_rich Low_complexity Low_complexity 1 29 0 349 216 34 23 chr4 151101277 151101365 -51226982 + MER5B DNA MER1_type 88 176 -2 830 132 22 0 chr4 151101615 151101751 -51226596 - L1MA5A LINE L1 -10 6287 6149 239 282 13 26 chr4 151105177 151105255 -51223092 - MLT1L LTR MaLR -538 77 1 1176 173 98 7 chr4 151106396 151106673 -51221674 - MER33 DNA MER1_type -22 302 1 388 330 88 22 chr4 151107218 151107400 -51220947 + MIR3 SINE MIR 3 196 -12 278 364 32 19 chr4 151107740 151107894 -51220453 - MIR SINE MIR -48 214 59 51 17 0 0 chr4 151108108 151108166 -51220181 + AT_rich Low_complexity Low_complexity 1 58 0 542 219 141 67 chr4 151109357 151109626 -51218721 - L2 LINE L2 0 3313 3025 865 193 0 50 chr4 151109962 151110143 -51218204 - FRAM SINE Alu -4 172 1 23 33 0 0 chr4 151111995 151112025 -51216322 + AT_rich Low_complexity Low_complexity 1 30 0 524 307 0 31 chr4 151114268 151114431 -51213916 - MIR SINE MIR -91 171 14 25 31 0 0 chr4 151114876 151114908 -51213439 + AT_rich Low_complexity Low_complexity 1 32 0 212 281 0 18 chr4 151115126 151115183 -51213164 - L2 LINE L2 -2 3270 3215 268 282 20 24 chr4 151115238 151115411 -51212936 - MIR SINE MIR -15 247 23 21 71 0 0 chr4 151115510 151115552 -51212795 + AT_rich Low_complexity Low_complexity 1 42 0 203 200 0 0 chr4 151115553 151115593 -51212754 + L2 LINE L2 3265 3304 -9 22 0 0 0 chr4 151116086 151116108 -51212239 + AT_rich Low_complexity Low_complexity 1 22 0 219 198 0 58 chr4 151116179 151116265 -51212082 + (TATATG)n Simple_repeat Simple_repeat 2 82 0 180 0 0 0 chr4 151116461 151116481 -51211866 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1649 181 22 32 chr4 151117403 151117718 -51210629 + AluJb SINE Alu 1 312 0 205 304 101 25 chr4 151117985 151118064 -51210283 - MIR SINE MIR -113 149 65 2175 119 0 0 chr4 151118151 151118454 -51209893 - AluSg1 SINE Alu -6 303 1 373 346 114 8 chr4 151118493 151118730 -51209617 - L3 LINE CR1 -100 1477 1216 243 0 0 0 chr4 151118732 151118759 -51209588 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2097 196 70 0 chr4 151119106 151119504 -51208843 - MSTB LTR MaLR 0 426 1 721 279 96 12 chr4 151120084 151120324 -51208023 + MIR SINE MIR 3 262 0 192 77 0 0 chr4 151121079 151121105 -51207242 + (A)n Simple_repeat Simple_repeat 1 26 0 344 155 0 0 chr4 151121982 151122076 -51206271 - Alu SINE Alu 0 324 231 2074 125 3 12 chr4 151122652 151122979 -51205368 - L1PB4 LINE L1 -3 6153 5830 2104 108 0 4 chr4 151123537 151123816 -51204531 + AluSq SINE Alu 22 299 -14 281 386 35 0 chr4 151125477 151125591 -51202756 + MIR3 SINE MIR 59 176 -32 338 241 51 58 chr4 151125814 151125951 -51202396 + MIR SINE MIR 127 262 0 1482 269 76 69 chr4 151126106 151126351 -51201996 - L2 LINE L2 -253 3060 2818 2076 129 0 3 chr4 151126351 151126661 -51201686 + AluSg SINE Alu 1 309 -1 1482 269 76 69 chr4 151126661 151127110 -51201237 - L2 LINE L2 -495 2818 2365 2408 110 18 13 chr4 151127110 151127492 -51200855 + L1PA11 LINE L1 5790 6173 -1 1482 269 76 69 chr4 151127492 151127531 -51200816 - L2 LINE L2 -948 2365 2328 468 275 27 20 chr4 151127988 151128137 -51200210 - MIR SINE MIR -48 214 65 2320 90 3 0 chr4 151128254 151128554 -51199793 - AluY SINE Alu -10 301 1 1463 227 32 22 chr4 151128693 151129063 -51199284 + MLT1A2 LTR MaLR 1 374 0 22 0 0 0 chr4 151130943 151130965 -51197382 + AT_rich Low_complexity Low_complexity 1 22 0 2413 271 121 89 chr4 151131053 151133092 -51195255 + L2 LINE L2 137 2239 -1075 2068 152 33 12 chr4 151133095 151133431 -51194916 + MER7A DNA MER2_type 6 346 0 912 274 173 42 chr4 151133434 151133955 -51194392 + L2 LINE L2 2240 2828 -486 1069 284 167 29 chr4 151133955 151134476 -51193871 + MLT1E LTR MaLR 1 593 0 1083 288 127 30 chr4 151134476 151134910 -51193437 + L2 LINE L2 2825 3300 -13 2576 233 113 23 chr4 151136181 151137875 -51190472 - L1ME1 LINE L1 -15 6151 4292 4516 89 37 2 chr4 151138797 151139147 -51189200 - L1PB1 LINE L1 -8 6143 5758 345 47 0 0 chr4 151139147 151139190 -51189157 + (TG)n Simple_repeat Simple_repeat 1 43 0 4516 89 37 2 chr4 151139190 151139480 -51188867 - L1PB1 LINE L1 -393 5758 5480 1392 127 1 22 chr4 151139482 151139842 -51188505 + L1PB1 LINE L1 5115 5469 -682 255 333 44 56 chr4 151140240 151140420 -51187927 - MIR3 SINE MIR -56 152 3 488 285 86 13 chr4 151142484 151142635 -51185712 - MIR3 SINE MIR -28 180 19 22 35 0 0 chr4 151143533 151143562 -51184785 + AT_rich Low_complexity Low_complexity 1 29 0 523 228 218 41 chr4 151143637 151143834 -51184513 - MIR SINE MIR -26 236 5 27 0 0 0 chr4 151144432 151144459 -51183888 + AT_rich Low_complexity Low_complexity 1 27 0 322 313 22 21 chr4 151145110 151145253 -51183094 + MIR3 SINE MIR 56 205 -3 1938 113 73 0 chr4 151145622 151145897 -51182450 + AluSp SINE Alu 9 303 -10 273 29 0 0 chr4 151145897 151145931 -51182416 + (CA)n Simple_repeat Simple_repeat 2 35 0 1730 167 33 22 chr4 151147003 151147363 -51180984 - L1MA7 LINE L1 -2 6289 5926 779 229 67 38 chr4 151147367 151147679 -51180668 - MER4C LTR ERV1 -3 696 276 752 189 49 161 chr4 151147683 151148074 -51180273 - MER4A LTR ERV1 -317 347 1 2429 147 30 21 chr4 151148075 151148505 -51179842 - L1MA7 LINE L1 -364 5927 5494 662 89 10 10 chr4 151148513 151148614 -51179733 - AluY SINE Alu -7 304 204 2464 84 0 0 chr4 151148721 151149032 -51179315 - AluY SINE Alu 0 311 1 6611 154 44 19 chr4 151149032 151150447 -51177900 - L1MA7 LINE L1 -745 5401 4054 212 284 216 11 chr4 151151527 151151615 -51176732 + MER5A DNA MER1_type 1 106 -83 986 214 0 5 chr4 151151858 151152050 -51176297 - MLT1B LTR MaLR -11 379 189 411 171 0 0 chr4 151152071 151152147 -51176200 + GA-rich Low_complexity Low_complexity 1 76 0 688 202 82 33 chr4 151152147 151152330 -51176017 - MLT1B LTR MaLR -198 192 1 1102 282 44 52 chr4 151152690 151153395 -51174952 + L2 LINE L2 2452 3154 -159 351 0 0 0 chr4 151153395 151153434 -51174913 + (TA)n Simple_repeat Simple_repeat 1 39 0 1102 282 44 52 chr4 151153434 151153546 -51174801 + L2 LINE L2 3154 3265 -48 21 36 0 0 chr4 151154286 151154314 -51174033 + AT_rich Low_complexity Low_complexity 1 28 0 1164 303 82 24 chr4 151154352 151154990 -51173357 - L2 LINE L2 -2 3311 2626 22 35 0 0 chr4 151156475 151156504 -51171843 + AT_rich Low_complexity Low_complexity 1 29 0 2275 95 0 3 chr4 151156790 151157095 -51171252 + AluSc SINE Alu 1 304 -5 515 233 19 0 chr4 151157097 151157200 -51171147 + Tigger3(Golem) DNA MER2_type 4 108 -2921 * 1457 106 25 25 chr4 151157197 151157471 -51170876 + Tigger3(Golem) DNA MER2_type 2281 2554 -475 23 101 0 0 chr4 151157471 151157550 -51170797 + AT_rich Low_complexity Low_complexity 1 79 0 41775 42 22 1 chr4 151157703 151163722 -51164625 - L1PA3 LINE L1 0 6155 5 2860 135 21 8 chr4 151163723 151164204 -51164143 + Tigger3(Golem) DNA MER2_type 2542 3028 -1 180 329 53 13 chr4 151164403 151164479 -51163868 + L3 LINE CR1 421 499 -1078 2797 3 0 0 chr4 151164579 151164879 -51163468 + AluY SINE Alu 1 300 -11 461 300 160 10 chr4 151164883 151165083 -51163264 - MIR SINE MIR -27 235 6 22 35 0 0 chr4 151165700 151165729 -51162618 + AT_rich Low_complexity Low_complexity 1 29 0 193 393 82 7 chr4 151167327 151167462 -51160885 + MIR3 SINE MIR 41 185 -23 393 75 0 0 chr4 151168384 151168437 -51159910 + (CA)n Simple_repeat Simple_repeat 2 54 0 278 121 0 17 chr4 151168437 151168451 -51159896 + (GA)n Simple_repeat Simple_repeat 1 14 -43 2183 90 0 4 chr4 151168451 151168728 -51159619 + AluSq SINE Alu 27 302 -11 278 121 0 17 chr4 151168728 151168771 -51159576 + (GA)n Simple_repeat Simple_repeat 14 57 0 12813 76 9 129 chr4 151169269 151172306 -51156041 + L1PA7 LINE L1 3147 5766 -388 2286 92 0 13 chr4 151172306 151172609 -51155738 + AluY SINE Alu 1 299 -12 12813 76 9 129 chr4 151172609 151172726 -51155621 + L1PA7 LINE L1 5766 5895 -259 281 195 86 109 chr4 151172936 151173014 -51155333 + MIR SINE MIR 121 199 -63 2091 109 0 10 chr4 151173014 151173318 -51155029 + AluY SINE Alu 3 303 -8 423 0 0 0 chr4 151173318 151173365 -51154982 + (TA)n Simple_repeat Simple_repeat 2 48 0 281 195 86 109 chr4 151173365 151173413 -51154934 + MIR SINE MIR 197 245 -17 2328 93 17 0 chr4 151174108 151174408 -51153939 - AluSc SINE Alu -4 305 1 327 250 104 0 chr4 151176529 151176625 -51151722 - MIR SINE MIR -3 259 154 216 244 205 13 chr4 151178712 151178790 -51149557 - L2 LINE L2 0 3313 3221 269 122 0 0 chr4 151178848 151178897 -51149450 + L1MB2 LINE L1 6119 6167 -4 243 161 0 0 chr4 151180043 151180099 -51148248 + GA-rich Low_complexity Low_complexity 1 56 0 193 341 94 0 chr4 151181447 151181532 -51146815 + MIR SINE MIR 20 112 -150 184 161 32 0 chr4 151181953 151181984 -51146363 - MER5B DNA MER1_type -41 137 106 241 319 179 0 chr4 151182638 151182779 -51145568 + MIR SINE MIR 20 183 -71 1952 141 7 0 chr4 151183195 151183486 -51144861 + AluSx SINE Alu 5 297 -15 2145 118 0 0 chr4 151184129 151184444 -51143903 + AluSx SINE Alu 1 315 0 387 344 40 0 chr4 151185574 151185699 -51142648 + MIR SINE MIR 82 211 -51 2174 127 0 0 chr4 151186528 151186828 -51141519 + AluSx SINE Alu 1 300 -12 6630 23 5 0 chr4 151190301 151191080 -51137267 + L1PA4 LINE L1 5368 6150 -5 244 317 92 8 chr4 151192296 151192416 -51135931 + MIR SINE MIR 77 206 -56 201 312 54 0 chr4 151192477 151192570 -51135777 - MIR SINE MIR -81 181 84 22 56 0 0 chr4 151193216 151193252 -51135095 + AT_rich Low_complexity Low_complexity 1 36 0 1224 335 163 23 chr4 151193273 151194280 -51134067 - L2 LINE L2 0 3313 2174 224 366 38 0 chr4 151194414 151194546 -51133801 + MIR3 SINE MIR 10 151 -67 601 333 10 0 chr4 151195874 151196066 -51132281 - MIR SINE MIR -67 195 2 195 424 28 7 chr4 151196873 151197017 -51131330 + MIR SINE MIR 5 151 -111 402 320 35 17 chr4 151197059 151197231 -51131116 + MIR SINE MIR 88 262 0 1740 181 0 28 chr4 151197441 151197762 -51130585 + AluJo SINE Alu 1 312 0 247 267 172 0 chr4 151199471 151199587 -51128760 - L1ME LINE L1 -204 5917 5782 26 64 0 0 chr4 151199806 151199853 -51128494 + AT_rich Low_complexity Low_complexity 1 47 0 196 225 8 155 chr4 151200571 151200700 -51127647 + L2 LINE L2 3040 3149 -164 27 0 0 0 chr4 151202287 151202314 -51126033 + AT_rich Low_complexity Low_complexity 1 27 0 26 30 0 0 chr4 151202943 151202976 -51125371 + AT_rich Low_complexity Low_complexity 1 33 0 36 53 0 0 chr4 151203052 151203109 -51125238 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr4 151203299 151203321 -51125026 + AT_rich Low_complexity Low_complexity 1 22 0 1294 94 128 0 chr4 151209711 151209914 -51118433 + MER30 DNA MER1_type 1 229 -1 6685 202 33 33 chr4 151210401 151212590 -51115757 + L1P3 LINE L1 1 2214 -4247 2181 133 6 3 chr4 151212597 151212934 -51115413 + L1P3 LINE L1 3607 3944 -2517 * 5363 130 9 8 chr4 151212919 151213797 -51114550 + L1P LINE L1 4755 5633 -828 996 327 48 12 chr4 151213964 151214380 -51113967 + LTR16B LTR ERVL 34 464 0 217 237 0 68 chr4 151215036 151215095 -51113252 - L2 LINE L2 0 3272 3218 571 261 46 71 chr4 151215642 151215880 -51112467 - L1MA9 LINE L1 0 6291 6060 186 240 40 27 chr4 151216739 151216814 -51111533 - L2 LINE L2 -1605 1709 1634 2292 102 0 16 chr4 151217046 151217359 -51110988 + AluSg SINE Alu 1 308 -2 241 274 35 0 chr4 151217357 151217470 -51110877 + L1M4 LINE L1 5114 5230 -916 699 289 114 35 chr4 151217489 151217686 -51110661 + L1ME LINE L1 25 205 -6218 2401 126 22 6 chr4 151217686 151218044 -51110303 - THE1B LTR MaLR 0 364 1 699 289 114 35 chr4 151218044 151218303 -51110044 + L1ME LINE L1 205 517 -5906 335 344 51 22 chr4 151218438 151218714 -51109633 + L1ME LINE L1 819 1102 -5321 186 203 27 14 chr4 151218724 151218798 -51109549 + GA-rich Low_complexity Low_complexity 2 76 0 703 238 73 16 chr4 151218837 151219144 -51109203 + L1ME LINE L1 1350 1849 -5082 502 145 0 0 chr4 151219152 151219235 -51109112 - L1PA8 LINE L1 -863 5283 5201 6242 76 7 15 chr4 151219235 151220114 -51108233 + L1PA8 LINE L1 5301 6172 0 363 254 99 60 chr4 151220115 151220316 -51108031 + L1ME LINE L1 1726 1934 -4905 1854 255 104 7 chr4 151220325 151221065 -51107282 + L1ME LINE L1 3112 3923 -3018 505 301 120 3 chr4 151221196 151221578 -51106769 + L1ME LINE L1 6159 6585 -372 252 136 0 0 chr4 151221745 151221789 -51106558 - MADE1 DNA Mariner -1 79 36 205 358 130 52 chr4 151222363 151222863 -51105484 - L2 LINE L2 -2467 847 309 216 0 0 0 chr4 151223249 151223273 -51105074 + (A)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr4 151223723 151223744 -51104603 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 565 277 126 6 chr4 151224232 151224341 -51104006 + MER5A DNA MER1_type 9 144 -45 2360 98 7 0 chr4 151224341 151224636 -51103711 + AluSc SINE Alu 1 297 -12 565 277 126 6 chr4 151224636 151224685 -51103662 + MER5A DNA MER1_type 144 186 -3 270 298 163 33 chr4 151225517 151225732 -51102615 - MIR SINE MIR 0 262 20 21 57 0 0 chr4 151225858 151225893 -51102454 + AT_rich Low_complexity Low_complexity 1 35 0 2260 112 3 3 chr4 151226167 151226470 -51101877 - AluSx SINE Alu -9 303 1 2160 91 0 0 chr4 151226849 151227157 -51101190 - L1PA6 LINE L1 -26 6128 5821 183 374 109 23 chr4 151227445 151227619 -51100728 - MIR3 SINE MIR -13 195 7 388 240 205 12 chr4 151229551 151229722 -51098625 + MIR SINE MIR 4 207 -55 6109 138 32 3 chr4 151229947 151231507 -51096840 - L1MA1 LINE L1 0 6302 4692 788 231 37 24 chr4 151231561 151231859 -51096488 + L1ME1 LINE L1 4437 4738 -1408 1969 237 57 61 chr4 151231912 151232682 -51095665 + L1ME1 LINE L1 4835 5611 -555 836 173 0 0 chr4 151232682 151232815 -51095532 - FLAM_C SINE Alu 0 133 1 1969 237 57 61 chr4 151232815 151233351 -51094996 + L1ME1 LINE L1 5611 6148 -18 34 0 0 0 chr4 151233406 151233440 -51094907 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr4 151234279 151234310 -51094037 + AT_rich Low_complexity Low_complexity 1 31 0 211 312 13 13 chr4 151234330 151234407 -51093940 + GA-rich Low_complexity Low_complexity 2 78 0 327 306 10 0 chr4 151235095 151235193 -51093154 - MIR SINE MIR -118 144 46 1565 188 30 4 chr4 151235816 151236087 -51092260 + AluJb SINE Alu 1 278 -34 207 341 173 25 chr4 151236912 151237235 -51091112 + L2 LINE L2 2832 3202 -111 26 50 0 0 chr4 151237303 151237343 -51091004 + AT_rich Low_complexity Low_complexity 1 40 0 301 136 61 45 chr4 151237900 151237966 -51090381 - MIR SINE MIR -27 235 169 1576 228 97 59 chr4 151237967 151238499 -51089848 + MER77 LTR ERV1 4 561 -44 2584 97 19 13 chr4 151238499 151238872 -51089475 + THE1C LTR MaLR 1 375 0 1576 228 97 59 chr4 151238872 151238919 -51089428 + MER77 LTR ERV1 561 605 0 429 291 93 0 chr4 151238919 151239070 -51089277 - MIR SINE MIR -87 175 11 2455 166 29 5 chr4 151240559 151240975 -51087372 + MSTB LTR MaLR 1 426 0 9033 168 14 28 chr4 151240975 151242650 -51085697 + MSTB-int LTR MaLR 1 1651 0 2414 180 24 2 chr4 151242650 151243067 -51085280 + MSTB LTR MaLR 1 426 0 2621 165 9 5 chr4 151243357 151243787 -51084560 + MSTB1 LTR MaLR 1 432 0 631 275 114 38 chr4 151244047 151244442 -51083905 + L1ME4a LINE L1 4235 4657 -1489 247 343 57 0 chr4 151244611 151244681 -51083666 - L2 LINE L2 0 3272 3199 277 214 71 10 chr4 151245237 151245335 -51083012 + L1ME4a LINE L1 5379 5482 -639 490 283 34 17 chr4 151245669 151245902 -51082445 + L1ME4a LINE L1 5598 5834 -287 224 328 65 59 chr4 151246007 151246193 -51082154 + MIR SINE MIR 57 243 -19 365 336 124 20 chr4 151246311 151246659 -51081688 + LTR67 LTR ERVL 21 404 -153 454 126 109 126 chr4 151246731 151246914 -51081433 + ORSL DNA AcHobo 11 190 -85 208 281 105 64 chr4 151247254 151247425 -51080922 - L3 LINE CR1 -37 1540 1363 271 353 56 20 chr4 151248098 151248401 -51079946 + L1PA12 LINE L1 7 320 -7261 7154 228 34 17 chr4 151250127 151250217 -51078130 + L1PA12 LINE L1 2321 2408 -5176 184 29 29 29 chr4 151250217 151250251 -51078096 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7154 228 34 17 chr4 151250251 151252827 -51075520 + L1PA12 LINE L1 2408 5056 -2528 1087 198 16 0 chr4 151252828 151253020 -51075327 - AluJo SINE Alu -117 195 1 2956 198 20 31 chr4 151253028 151253730 -51074617 - L1P LINE L1 -1823 4323 3630 5489 125 19 2 chr4 151253730 151254893 -51073454 + L1PA15 LINE L1 4954 6161 -4 1672 83 0 0 chr4 151255871 151256076 -51072271 + AluSc SINE Alu 97 301 -8 25 0 0 0 chr4 151256412 151256437 -51071910 + AT_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr4 151256473 151256503 -51071844 + AT_rich Low_complexity Low_complexity 1 30 0 423 245 115 31 chr4 151256671 151256863 -51071484 + MER3 DNA MER1_type 2 209 0 187 351 10 77 chr4 151257676 151257884 -51070463 + L2 LINE L2 3102 3295 -18 234 0 0 0 chr4 151258104 151258130 -51070217 + (T)n Simple_repeat Simple_repeat 1 26 0 21 36 0 0 chr4 151259199 151259227 -51069120 + AT_rich Low_complexity Low_complexity 1 28 0 1652 80 0 4 chr4 151259528 151259753 -51068594 - L1PA12 LINE L1 -10 6158 5935 546 300 113 31 chr4 151260780 151261139 -51067208 + MLT1J2 LTR MaLR 10 413 -37 305 120 20 0 chr4 151261139 151261189 -51067158 - L1ME LINE L1 -592 5572 5522 1166 173 33 4 chr4 151262589 151262832 -51065515 - L1M2 LINE L1 -809 5503 5254 1583 122 92 13 chr4 151262836 151263139 -51065208 + MSTA LTR MaLR 1 327 -101 1274 140 5 0 chr4 151263161 151263368 -51064979 + MSTA LTR MaLR 221 428 0 1698 234 66 4 chr4 151263368 151263469 -51064878 - L1M2 LINE L1 -892 5254 5161 186 43 0 0 chr4 151263469 151263492 -51064855 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1698 234 66 4 chr4 151263492 151263907 -51064440 - L1M2 LINE L1 -985 5161 4706 205 88 29 0 chr4 151265026 151265060 -51063287 + (TCTA)n Simple_repeat Simple_repeat 3 37 0 2389 91 7 0 chr4 151266795 151267104 -51061243 + AluSq SINE Alu 1 311 -2 1812 152 7 3 chr4 151267104 151267387 -51060960 + AluSg SINE Alu 1 284 -26 225 0 0 0 chr4 151267392 151267417 -51060930 + (TTAAA)n Simple_repeat Simple_repeat 2 26 0 234 317 0 50 chr4 151267841 151267942 -51060405 + MIR SINE MIR 124 219 -43 227 263 35 0 chr4 151268535 151268592 -51059755 + MIR SINE MIR 92 150 -112 307 181 0 167 chr4 151272701 151272916 -51055431 + (CCCA)n Simple_repeat Simple_repeat 1 179 0 419 239 37 52 chr4 151273308 151273442 -51054905 + MIR SINE MIR 84 215 -47 481 114 61 18 chr4 151273546 151273660 -51054687 - ERVL LTR ERVL -187 5577 5459 195 100 0 0 chr4 151273660 151273690 -51054657 + (TA)n Simple_repeat Simple_repeat 2 31 0 707 137 16 0 chr4 151273705 151273829 -51054518 + Ricksha DNA DNA 255 380 -2866 197 128 21 0 chr4 151273835 151273882 -51054465 + (CA)n Simple_repeat Simple_repeat 1 48 0 2524 161 31 23 chr4 151273887 151274449 -51053898 - ERVL LTR ERVL -260 5394 4867 2405 151 42 20 chr4 151274457 151274961 -51053386 - ERVL LTR ERVL -796 4968 4426 435 310 15 25 chr4 151276188 151276385 -51051962 + L1ME1 LINE L1 5774 5968 -198 383 240 120 40 chr4 151276647 151276797 -51051550 - L1MC4a LINE L1 -1591 6217 6056 402 21 0 0 chr4 151276859 151276906 -51051441 + (CA)n Simple_repeat Simple_repeat 2 48 0 194 345 133 37 chr4 151278130 151278536 -51049811 + L2 LINE L2 2208 2652 -662 355 170 90 30 chr4 151278729 151278829 -51049518 + MER63 DNA MER1_type 15 746 -316 271 218 0 0 chr4 151278827 151278882 -51049465 + MER63 DNA MER1_type 982 1036 -26 * 316 244 100 32 chr4 151279310 151279621 -51048726 - HAL1 LINE L1 -1216 1291 960 471 282 101 63 chr4 151280157 151280505 -51047842 + L1ME LINE L1 5445 5805 -316 609 210 93 47 chr4 151282073 151282287 -51046060 + MIR SINE MIR 39 262 0 250 343 57 0 chr4 151334725 151334795 -50993552 - L2 LINE L2 0 3272 3199 302 224 61 0 chr4 151335351 151335449 -50992898 + L1ME4a LINE L1 5379 5482 -639 547 283 34 17 chr4 151335783 151336016 -50992331 + L1ME4a LINE L1 5598 5834 -287 233 328 65 59 chr4 151336121 151336307 -50992040 + MIR SINE MIR 57 243 -19 476 336 124 20 chr4 151336425 151336773 -50991574 + LTR67 LTR ERVL 21 404 -153 500 126 109 126 chr4 151336845 151337028 -50991319 + ORSL DNA AcHobo 11 190 -85 5716 132 34 5 chr4 151337398 151338838 -50989509 - L1MA1 LINE L1 -123 6179 4692 2205 235 78 50 chr4 151338892 151340013 -50988334 + L1ME1 LINE L1 4437 5628 -538 827 173 0 0 chr4 151340013 151340146 -50988201 - FLAM_C SINE Alu 0 133 1 2205 235 78 50 chr4 151340146 151340682 -50987665 + L1ME1 LINE L1 5628 6148 -18 34 0 0 0 chr4 151340737 151340771 -50987576 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr4 151341610 151341641 -50986706 + AT_rich Low_complexity Low_complexity 1 31 0 211 312 13 13 chr4 151341661 151341738 -50986609 + GA-rich Low_complexity Low_complexity 2 78 0 327 306 10 0 chr4 151342426 151342524 -50985823 - MIR SINE MIR -118 144 46 1547 188 30 4 chr4 151343147 151343418 -50984929 + AluJb SINE Alu 1 278 -34 207 341 173 25 chr4 151344243 151344566 -50983781 + L2 LINE L2 2832 3202 -111 26 50 0 0 chr4 151344634 151344674 -50983673 + AT_rich Low_complexity Low_complexity 1 40 0 304 136 61 45 chr4 151345231 151345297 -50983050 - MIR SINE MIR -27 235 169 1759 228 97 59 chr4 151345298 151345830 -50982517 + MER77 LTR ERV1 4 561 -44 2575 105 13 8 chr4 151345830 151346203 -50982144 + THE1C LTR MaLR 1 375 0 1759 228 97 59 chr4 151346203 151346250 -50982097 + MER77 LTR ERV1 561 605 0 430 291 93 0 chr4 151346250 151346401 -50981946 - MIR SINE MIR -87 175 11 2452 166 29 5 chr4 151347890 151348306 -50980041 + MSTB LTR MaLR 1 426 0 5857 177 12 16 chr4 151348306 151349386 -50978961 + MSTB-int LTR MaLR 1 1076 -575 3300 160 26 48 chr4 151349493 151350135 -50978212 + MSTB-int LTR MaLR 1024 1651 0 2413 180 24 2 chr4 151350135 151350552 -50977795 + MSTB LTR MaLR 1 426 0 2619 165 9 5 chr4 151350842 151351272 -50977075 + MSTB1 LTR MaLR 1 432 0 319 222 111 19 chr4 151351532 151351640 -50976707 + L1M4 LINE L1 4235 4352 -1794 209 281 105 64 chr4 151351895 151352066 -50976281 - L3 LINE CR1 -37 1540 1363 354 355 62 16 chr4 151352739 151353046 -50975301 + L1PA12 LINE L1 7 327 -7254 7551 258 43 14 chr4 151354832 151354858 -50973489 + L1P LINE L1 942 966 -5180 217 0 29 29 chr4 151354858 151354892 -50973455 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7551 258 43 14 chr4 151354892 151357467 -50970880 + L1P LINE L1 966 3618 -2528 1073 198 16 0 chr4 151357468 151357660 -50970687 - AluJo SINE Alu -117 195 1 3173 197 20 31 chr4 151357668 151358370 -50969977 - L1P LINE L1 -1823 4323 3630 5524 125 19 2 chr4 151358370 151359533 -50968814 + L1PA15 LINE L1 4954 6161 -4 1658 82 0 0 chr4 151360511 151360717 -50967630 + AluSc SINE Alu 97 302 -7 25 0 0 0 chr4 151361052 151361077 -50967270 + AT_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr4 151361113 151361143 -50967204 + AT_rich Low_complexity Low_complexity 1 30 0 437 245 115 31 chr4 151361311 151361503 -50966844 + MER3 DNA MER1_type 2 209 0 198 351 10 77 chr4 151362316 151362524 -50965823 + L2 LINE L2 3102 3295 -18 243 0 0 0 chr4 151362743 151362770 -50965577 + (T)n Simple_repeat Simple_repeat 1 27 0 21 36 0 0 chr4 151363839 151363867 -50964480 + AT_rich Low_complexity Low_complexity 1 28 0 1652 80 0 4 chr4 151364168 151364393 -50963954 - L1PA12 LINE L1 -10 6158 5935 619 299 113 31 chr4 151365421 151365780 -50962567 + MLT1J2 LTR MaLR 10 413 -37 1258 244 93 10 chr4 151365780 151366514 -50961833 - L1ME LINE L1 -592 5641 4851 1896 116 22 44 chr4 151366516 151366835 -50961512 + THE1B LTR MaLR 1 312 -52 4771 260 88 22 chr4 151366935 151368901 -50959446 - L1ME LINE L1 -1464 4751 2614 2176 118 3 3 chr4 151368901 151369206 -50959141 - AluSx SINE Alu -6 306 2 4771 260 88 22 chr4 151369206 151369524 -50958823 - L1ME LINE L1 -3601 2614 2318 1559 187 0 36 chr4 151369587 151369892 -50958455 - AluJb SINE Alu -8 304 11 4290 119 22 35 chr4 151369938 151370712 -50957635 - L1MA8 LINE L1 -2 6289 5526 889 178 23 33 chr4 151370712 151370916 -50957431 + L1MB1 LINE L1 4941 5146 -1145 1819 142 0 11 chr4 151370916 151371184 -50957163 + AluSx SINE Alu 32 296 -16 889 178 23 33 chr4 151371184 151371365 -50956982 + L1MB1 LINE L1 5146 5504 -787 21 71 0 0 chr4 151371397 151371439 -50956908 + AT_rich Low_complexity Low_complexity 1 42 0 2564 96 28 0 chr4 151371445 151371801 -50956546 + THE1C LTR MaLR 1 366 -9 9419 120 40 47 chr4 151371809 151373379 -50954968 + THE1C-int LTR MaLR 17 1575 -5 2558 125 16 0 chr4 151373386 151373755 -50954592 + THE1C LTR MaLR 1 375 0 305 231 97 37 chr4 151373831 151373965 -50954382 - L1ME LINE L1 -4484 1912 1771 441 293 125 14 chr4 151373979 151374259 -50954088 - L1ME LINE L1 -4651 1745 1435 250 151 0 38 chr4 151374861 151374914 -50953433 - MER4-int LTR ERV1 -5440 1158 1108 1141 262 58 14 chr4 151375650 151376066 -50952281 - L1ME3A LINE L1 -216 5954 5521 239 200 133 0 chr4 151377623 151377698 -50950649 + L1MC4 LINE L1 6617 6701 -1341 218 294 0 0 chr4 151377698 151377749 -50950598 + (TATATG)n Simple_repeat Simple_repeat 5 55 0 1746 178 7 7 chr4 151378020 151378323 -50950024 + AluJb SINE Alu 1 303 -9 32 26 0 0 chr4 151378339 151378378 -50949969 + AT_rich Low_complexity Low_complexity 1 39 0 713 169 115 0 chr4 151379923 151380053 -50948294 + MER67C LTR ERV1 114 258 -452 1007 112 13 0 chr4 151380056 151380208 -50948139 - L1MB1 LINE L1 -346 5822 5669 1973 172 8 0 chr4 151380209 151380563 -50947784 + L1MB1 LINE L1 5812 6168 0 615 221 16 0 chr4 151380574 151380696 -50947651 + MER67D LTR ERV1 218 341 -173 258 328 59 35 chr4 151380987 151381383 -50946964 + HAL1 LINE L1 1087 1501 -1006 4011 171 24 56 chr4 151381383 151382005 -50946342 + LTR39 LTR ERV1 1 593 -190 1943 139 35 0 chr4 151382005 151382292 -50946055 - AluSq SINE Alu -16 297 1 4011 171 24 56 chr4 151382292 151382478 -50945869 + LTR39 LTR ERV1 593 783 0 258 328 59 35 chr4 151382478 151382621 -50945726 + HAL1 LINE L1 1501 1639 -868 649 303 166 40 chr4 151382806 151383513 -50944834 + L1MC4a LINE L1 4256 5051 -1095 569 300 102 34 chr4 151383597 151384270 -50944077 + L1MC4a LINE L1 5187 5360 -786 1309 143 22 48 chr4 151384543 151384774 -50943573 + AluJo SINE Alu 78 302 -10 422 341 161 10 chr4 151384935 151385140 -50943207 + MIR SINE MIR 25 260 -2 241 416 43 28 chr4 151386546 151386801 -50941546 + L2 LINE L2 2992 3250 -22 1529 168 160 70 chr4 151387423 151387826 -50940521 + MER67D LTR ERV1 4 456 -58 1731 119 15 8 chr4 151387826 151388087 -50940260 - AluSx SINE Alu -49 263 1 1529 168 160 70 chr4 151388087 151388152 -50940195 + MER67D LTR ERV1 456 514 0 942 219 43 9 chr4 151388240 151388450 -50939897 + MER20 DNA MER1_type 1 217 -2 2925 60 3 5 chr4 151388740 151389123 -50939224 - L1PA7 LINE L1 0 6154 5773 691 85 0 0 chr4 151389123 151389217 -50939130 + L1P LINE L1 4919 5012 -1134 266 81 0 0 chr4 151389220 151389257 -50939090 + L1P LINE L1 4994 5030 -1116 468 299 26 0 chr4 151389257 151389411 -50938936 + MIR SINE MIR 93 250 -12 804 215 11 6 chr4 151391086 151391263 -50937084 + MER5B DNA MER1_type 1 178 0 272 341 44 0 chr4 151391728 151391819 -50936528 - L2 LINE L2 -2 3270 3176 450 290 45 40 chr4 151392629 151392719 -50935628 - L2 LINE L2 0 3313 3225 1528 146 81 92 chr4 151392719 151392926 -50935421 - MLT1A1 LTR MaLR 0 365 162 2115 112 3 3 chr4 151392926 151393220 -50935127 - AluSq SINE Alu -19 294 1 1528 146 81 92 chr4 151393220 151393381 -50934966 - MLT1A1 LTR MaLR -203 162 1 450 290 45 40 chr4 151393381 151393490 -50934857 - L2 LINE L2 -88 3225 3113 2277 124 0 0 chr4 151394302 151394609 -50933738 - AluSx SINE Alu -5 307 1 587 286 119 14 chr4 151395861 151396071 -50932276 - MIR SINE MIR 0 262 31 657 295 104 44 chr4 151396231 151396529 -50931818 + LTR33 LTR ERVL 160 475 -46 185 307 0 107 chr4 151397702 151397777 -50930570 + MIR SINE MIR 24 90 -118 2020 265 32 9 chr4 151398014 151398543 -50929804 + MLT1F LTR MaLR 2 542 0 21 0 0 0 chr4 151399685 151399706 -50928641 + AT_rich Low_complexity Low_complexity 1 21 0 455 205 70 32 chr4 151400787 151400943 -50927404 - MER103 DNA DNA -2 164 3 367 235 29 20 chr4 151401519 151401621 -50926726 + MIR SINE MIR 49 151 -111 213 188 14 109 chr4 151401629 151401767 -50926580 + T-rich Low_complexity Low_complexity 2 126 0 745 232 19 0 chr4 151401867 151402022 -50926325 - FAM SINE Alu -17 158 1 281 356 149 10 chr4 151402232 151402440 -50925907 + MIR SINE MIR 19 255 -7 678 219 62 34 chr4 151402640 151402818 -50925529 + MER5A DNA MER1_type 1 183 -6 7817 16 1 0 chr4 151403170 151404071 -50924276 - L1PA3 LINE L1 0 6155 5254 * 12119 26 0 0 chr4 151404061 151405493 -50922854 + L1PA3 LINE L1 3800 5231 -915 31 58 0 0 chr4 151406747 151406799 -50921548 + AT_rich Low_complexity Low_complexity 1 52 0 215 236 0 18 chr4 151406852 151406907 -50921440 + (CATA)n Simple_repeat Simple_repeat 1 54 0 313 324 102 0 chr4 151407233 151407341 -50921006 + Charlie1a DNA MER1_type 2 120 -1335 1006 206 77 52 chr4 151407393 151407680 -50920667 + Charlie1a DNA MER1_type 109 402 -1053 1487 235 95 40 chr4 151407686 151408218 -50920129 - MLT1F1 LTR MaLR 0 567 1 * 3690 210 62 30 chr4 151408218 151409237 -50919110 + Charlie1a DNA MER1_type 405 1455 0 237 224 121 0 chr4 151409593 151409651 -50918696 + MER117 DNA MER1_type 26 90 -107 636 226 119 0 chr4 151409662 151409839 -50918508 - MLT1D LTR MaLR -3 502 305 1099 284 75 34 chr4 151409858 151410043 -50918304 - L2 LINE L2 0 3313 3137 333 118 0 0 chr4 151410043 151410094 -50918253 + (TA)n Simple_repeat Simple_repeat 1 51 0 1099 284 75 34 chr4 151410094 151410723 -50917624 - L2 LINE L2 -176 3137 2479 183 156 0 0 chr4 151410792 151410824 -50917523 + GA-rich Low_complexity Low_complexity 3 34 0 552 327 117 31 chr4 151411441 151412120 -50916227 + L2 LINE L2 2491 3220 -93 34 0 0 0 chr4 151412967 151413001 -50915346 + AT_rich Low_complexity Low_complexity 1 34 0 1007 289 17 7 chr4 151413233 151413534 -50914813 + MLT1I LTR MaLR 98 401 -8 1317 197 86 46 chr4 151413597 151413948 -50914399 + MLT1A1 LTR MaLR 1 365 0 46 0 0 0 chr4 151413993 151414039 -50914308 + AT_rich Low_complexity Low_complexity 1 46 0 260 317 125 0 chr4 151414908 151415028 -50913319 + MIR SINE MIR 128 262 0 273 344 74 11 chr4 151415094 151415283 -50913064 + L2 LINE L2 2149 2349 -965 464 274 40 16 chr4 151415306 151415430 -50912917 + MER115 DNA AcHobo 1 127 -566 2279 93 0 17 chr4 151416131 151416432 -50911915 - AluSc SINE Alu -13 296 1 270 0 0 0 chr4 151416730 151416738 -50911609 + (TA)n Simple_repeat Simple_repeat 1 38 0 270 0 0 0 chr4 151416738 151416768 -50911579 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 387 0 0 0 chr4 151416767 151416810 -50911537 + (GA)n Simple_repeat Simple_repeat 2 44 0 673 188 44 50 chr4 151416883 151417043 -50911304 + MER6B DNA MER2_type 2 160 -50 411 106 0 0 chr4 151417047 151417113 -50911234 + (TG)n Simple_repeat Simple_repeat 1 66 0 32 43 0 0 chr4 151418393 151418439 -50909908 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr4 151418487 151418512 -50909835 + AT_rich Low_complexity Low_complexity 1 25 0 32 26 0 0 chr4 151419068 151419107 -50909240 + AT_rich Low_complexity Low_complexity 1 39 0 201 133 0 0 chr4 151420118 151420148 -50908199 + (CA)n Simple_repeat Simple_repeat 2 31 0 329 228 221 44 chr4 151420525 151420661 -50907686 - MIR SINE MIR -65 197 38 1890 233 38 110 chr4 151420875 151421694 -50906653 + LTR41 LTR ERVL 1 760 -13 311 0 26 0 chr4 151423459 151423498 -50904849 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr4 151423868 151423891 -50904456 + AT_rich Low_complexity Low_complexity 1 23 0 598 237 24 72 chr4 151424585 151424792 -50903555 - MIR SINE MIR 0 262 66 315 322 0 0 chr4 151425040 151425130 -50903217 + L1MC4 LINE L1 6614 6703 -1339 * 328 302 0 10 chr4 151425084 151425180 -50903167 - L1MC4 LINE L1 -1339 6703 6609 3128 118 4 4 chr4 151425270 151425752 -50902595 - L1PA13 LINE L1 -4 6159 5678 237 276 67 9 chr4 151426183 151426288 -50902059 - L1ME4a LINE L1 -12 6109 5999 239 266 11 34 chr4 151426870 151426996 -50901351 - MIR SINE MIR 0 208 84 264 30 0 0 chr4 151428082 151428115 -50900232 + (TG)n Simple_repeat Simple_repeat 2 34 0 369 275 137 28 chr4 151428322 151428504 -50899843 - MIR3 SINE MIR -6 202 1 191 339 92 9 chr4 151429393 151429502 -50898845 - MIR SINE MIR -123 139 22 203 188 21 0 chr4 151429913 151429961 -50898386 + (TA)n Simple_repeat Simple_repeat 1 49 0 242 361 105 30 chr4 151430024 151430157 -50898190 - L2 LINE L2 -5 3267 3125 377 295 67 20 chr4 151430173 151430322 -50898025 + MIR SINE MIR 77 232 -30 411 315 21 14 chr4 151430461 151430604 -50897743 + MLT1K LTR MaLR 2 145 -443 491 273 155 6 chr4 151431548 151431709 -50896638 - MER5A DNA MER1_type 0 189 5 782 260 89 4 chr4 151432011 151432246 -50896101 - MIR SINE MIR 0 262 8 436 377 112 28 chr4 151432261 151432754 -50895593 + L2 LINE L2 1860 2393 -921 1067 291 39 9 chr4 151432826 151433163 -50895184 + LTR16C LTR ERVL 145 491 0 202 272 155 117 chr4 151433164 151433249 -50895098 + L2 LINE L2 2364 2444 -870 2278 100 10 0 chr4 151433249 151433559 -50894788 + AluSq SINE Alu 1 313 0 202 272 155 117 chr4 151433559 151433977 -50894370 + L2 LINE L2 2444 2886 -428 2494 63 0 10 chr4 151434927 151435228 -50893119 + AluY SINE Alu 1 298 -13 216 272 196 0 chr4 151435393 151435485 -50892862 - MIR3 SINE MIR -54 154 45 262 271 90 33 chr4 151436812 151436934 -50891413 - MIR3 SINE MIR -71 137 9 313 240 24 48 chr4 151437887 151438012 -50890335 - MLT1J2 LTR MaLR -1 449 328 656 82 0 0 chr4 151438066 151438164 -50890183 + AluY SINE Alu 213 310 -1 280 303 42 8 chr4 151438227 151438346 -50890001 - MLT1J2 LTR MaLR -255 195 73 1923 226 75 59 chr4 151439712 151440257 -50888090 - MLT2B3 LTR ERVL 0 554 1 2243 88 0 7 chr4 151440739 151441060 -50887287 - AluSg SINE Alu 0 319 1 234 174 0 0 chr4 151441303 151441349 -50886998 + T-rich Low_complexity Low_complexity 1 46 0 1262 246 63 57 chr4 151442922 151443421 -50884926 + MLT1H LTR MaLR 5 547 -2 303 93 0 0 chr4 151443781 151443824 -50884523 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 275 263 72 129 chr4 151443915 151444109 -50884238 - MER5A DNA MER1_type 0 189 7 923 204 69 19 chr4 151444252 151444468 -50883879 - L1MC4 LINE L1 -280 7762 7536 2969 226 19 34 chr4 151444468 151445255 -50883092 + L1MC4a LINE L1 6656 7430 -378 189 375 62 45 chr4 151445412 151445946 -50882401 - L2 LINE L2 -514 2800 2258 284 259 62 12 chr4 151445989 151446070 -50882277 - MIR SINE MIR -146 116 32 180 152 0 0 chr4 151447474 151447507 -50880840 + T-rich Low_complexity Low_complexity 1 33 0 460 261 39 33 chr4 151448727 151448880 -50879467 - MIR SINE MIR -2 260 107 180 0 0 0 chr4 151450431 151450451 -50877896 + (A)n Simple_repeat Simple_repeat 1 20 0 438 202 50 0 chr4 151450646 151450745 -50877602 - L1MA9 LINE L1 -35 6277 6174 275 274 32 0 chr4 151451206 151451268 -50877079 + L2 LINE L2 3209 3272 0 254 183 14 0 chr4 151452199 151452270 -50876077 + (TA)n Simple_repeat Simple_repeat 2 73 0 1408 140 219 38 chr4 151452311 151452654 -50875693 - MSTA LTR MaLR -23 405 1 223 353 75 30 chr4 151453989 151454190 -50874157 + L2 LINE L2 3009 3218 -95 270 250 15 0 chr4 151454708 151454776 -50873571 - MIR SINE MIR -64 144 76 387 276 32 32 chr4 151454885 151455041 -50873306 + MIR SINE MIR 107 262 0 456 281 23 8 chr4 151455455 151455583 -50872764 - L2 LINE L2 0 3313 3184 23 0 0 0 chr4 151455828 151455851 -50872496 + AT_rich Low_complexity Low_complexity 1 23 0 611 160 95 6 chr4 151456308 151456477 -50871870 + MER63 DNA MER1_type 63 246 -815 1041 205 19 5 chr4 151456507 151456722 -50871625 + MER63 DNA MER1_type 596 813 -247 199 354 34 61 chr4 151456746 151456893 -50871454 - L2 LINE L2 -38 3234 3092 298 309 133 12 chr4 151456935 151457100 -50871247 + MIR SINE MIR 57 241 -21 924 251 40 80 chr4 151457140 151457467 -50870880 - MLT1E LTR MaLR -279 314 1 2089 137 25 55 chr4 151457704 151458106 -50870241 - MLT1B LTR MaLR 0 390 1 257 326 41 95 chr4 151458448 151458740 -50869607 - L2 LINE L2 -78 3235 2970 1260 224 132 44 chr4 151458740 151459180 -50869167 + MLT2B1 LTR ERVL 1 488 -32 716 61 0 10 chr4 151459180 151459279 -50869068 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 1260 224 132 44 chr4 151459279 151459316 -50869031 + MLT2B1 LTR ERVL 488 520 0 257 326 41 95 chr4 151459316 151459434 -50868913 - L2 LINE L2 -343 2970 2847 324 221 243 104 chr4 151459482 151459704 -50868643 + MIR SINE MIR 2 254 -8 278 345 90 14 chr4 151462349 151462494 -50865853 + MIR SINE MIR 48 203 -59 32 43 0 0 chr4 151463223 151463269 -50865078 + AT_rich Low_complexity Low_complexity 1 46 0 2595 181 109 143 chr4 151463497 151464110 -50864237 - L1MC3 LINE L1 0 7785 7144 266 205 39 26 chr4 151464110 151464188 -50864159 - MLT1F1 LTR MaLR -465 102 24 2595 181 109 143 chr4 151464188 151464602 -50863745 - L1MC3 LINE L1 -641 7144 6718 180 0 0 0 chr4 151465263 151465283 -50863064 + (TTA)n Simple_repeat Simple_repeat 2 21 0 864 54 0 0 chr4 151465291 151465402 -50862945 - L1PA6 LINE L1 -15 6139 6029 1562 196 0 14 chr4 151465444 151465778 -50862569 + AluSx SINE Alu 1 330 0 343 339 68 30 chr4 151466194 151466430 -50861917 - L2 LINE L2 -213 3059 2815 8283 212 81 56 chr4 151466821 151466960 -50861387 + L1MC3 LINE L1 3452 3586 -4199 1584 85 32 4 chr4 151466960 151467206 -50861141 - L1MA3 LINE L1 -5 6300 6048 8283 212 81 56 chr4 151467206 151470449 -50857898 + L1MC3 LINE L1 3586 6744 -1041 1375 161 109 44 chr4 151470449 151470723 -50857624 + AluJb SINE Alu 1 292 -20 8283 212 81 56 chr4 151470723 151470872 -50857475 + L1MC3 LINE L1 6744 6888 -897 180 77 0 0 chr4 151470872 151470898 -50857449 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 8283 212 81 56 chr4 151470898 151470956 -50857391 + L1MC3 LINE L1 6888 6943 -842 230 275 0 29 chr4 151470956 151471025 -50857322 + MLT1F1 LTR MaLR 45 111 -456 8283 212 81 56 chr4 151471025 151471593 -50856754 + L1MC3 LINE L1 6943 7782 -3 1958 149 0 10 chr4 151472236 151472537 -50855810 + AluJo SINE Alu 1 298 -14 204 40 0 0 chr4 151473289 151473314 -50855033 + (CA)n Simple_repeat Simple_repeat 2 26 0 324 274 32 0 chr4 151473359 151473483 -50854864 - L1MC4a LINE L1 -1942 5866 5739 384 312 35 24 chr4 151473616 151473799 -50854548 - L1MC4a LINE L1 -406 5715 5531 614 305 30 6 chr4 151473830 151473994 -50854353 - MIR SINE MIR -64 198 31 2346 94 0 0 chr4 151474093 151474401 -50853946 + AluY SINE Alu 1 308 -3 257 309 32 21 chr4 151474993 151475087 -50853260 + MER94 DNA DNA 39 133 -1 192 40 0 0 chr4 151475264 151475289 -50853058 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1596 150 59 4 chr4 151475292 151475565 -50852782 - AluSx SINE Alu -24 288 1 617 250 121 63 chr4 151475607 151476023 -50852324 + MLT1H LTR MaLR 52 547 -8 183 373 0 0 chr4 151476522 151476589 -50851758 - MIR SINE MIR -149 113 47 8196 230 67 42 chr4 151477407 151481108 -50847239 + L1MA4A LINE L1 10 3812 -3036 2377 95 0 0 chr4 151481108 151481412 -50846935 + AluY SINE Alu 1 304 -7 8196 230 67 42 chr4 151481412 151481475 -50846872 + L1MA4A LINE L1 3812 3872 -2976 2482 153 9 2 chr4 151481486 151481910 -50846437 + L1PA11 LINE L1 4226 4652 -1494 6293 82 13 22 chr4 151481910 151482826 -50845521 + L1PA11 LINE L1 5267 6174 0 * 10405 170 32 33 chr4 151482802 151483324 -50845023 + L1MA4A LINE L1 3852 4373 -2632 243 0 0 0 chr4 151483324 151483351 -50844996 + (CA)n Simple_repeat Simple_repeat 2 28 0 10405 170 32 33 chr4 151483351 151485982 -50842365 + L1MA4A LINE L1 4373 7005 0 340 328 9 56 chr4 151486438 151486670 -50841677 - L1ME4a LINE L1 -157 5964 5744 23 0 0 0 chr4 151487048 151487071 -50841276 + AT_rich Low_complexity Low_complexity 1 23 0 343 182 0 102 chr4 151487942 151488030 -50840317 + L2 LINE L2 3225 3303 -10 42 57 0 0 chr4 151488601 151488671 -50839676 + AT_rich Low_complexity Low_complexity 1 70 0 720 211 53 21 chr4 151489331 151489464 -50838883 + MER3 DNA MER1_type 13 155 -54 2291 125 34 0 chr4 151489464 151489816 -50838531 + THE1B LTR MaLR 1 364 0 720 211 53 21 chr4 151489816 151489872 -50838475 + MER3 DNA MER1_type 155 208 -1 190 400 0 0 chr4 151490034 151490094 -50838253 + MIR SINE MIR 64 123 -85 2522 157 7 16 chr4 151490365 151490797 -50837550 - MSTA LTR MaLR 0 428 1 2179 95 0 74 chr4 151491052 151491389 -50836958 - AluSx SINE Alu 0 312 1 385 241 0 19 chr4 151491680 151491788 -50836559 + Charlie7 DNA MER1_type 45 150 -2462 1696 211 25 22 chr4 151491831 151492000 -50836347 - MLT1A1 LTR MaLR 0 365 198 478 101 13 38 chr4 151492000 151492079 -50836268 - MADE1 DNA Mariner 0 80 4 1696 211 25 22 chr4 151492079 151492273 -50836074 - MLT1A1 LTR MaLR -167 198 1 1061 291 83 29 chr4 151492273 151492720 -50835627 + MLT1J LTR MaLR 41 511 0 405 194 0 0 chr4 151493463 151493535 -50834812 + L1PB4 LINE L1 4753 4824 -1322 577 130 46 37 chr4 151493535 151493663 -50834684 + AluSg/x SINE Alu 175 303 0 2929 154 30 7 chr4 151493666 151494535 -50833812 + L1PB4 LINE L1 4826 5716 -440 1088 198 47 88 chr4 151494558 151494897 -50833450 - MER4D LTR ERV1 -30 873 549 1140 174 14 42 chr4 151494932 151495145 -50833202 - MER49 LTR ERV1 -629 294 88 455 153 63 18 chr4 151495245 151495356 -50832991 + L1MA2 LINE L1 6189 6304 0 643 129 0 0 chr4 151545599 151545692 -50782655 - MER49 LTR ERV1 -830 93 1 868 170 41 26 chr4 151545713 151545907 -50782440 - LTR48 LTR ERV1 -1 786 590 1561 188 63 91 chr4 151545969 151546431 -50781916 - LTR48 LTR ERV1 -338 449 1 415 248 0 0 chr4 151546431 151546532 -50781815 - L1ME LINE L1 -681 5481 5381 2607 161 9 2 chr4 151546532 151546979 -50781368 + L1PB4 LINE L1 5704 6153 -3 22 35 0 0 chr4 151547822 151547851 -50780496 + AT_rich Low_complexity Low_complexity 1 29 0 4597 179 27 24 chr4 151548000 151548755 -50779592 + L1MB1 LINE L1 4528 5279 -889 270 0 0 0 chr4 151548755 151548785 -50779562 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 4597 179 27 24 chr4 151548785 151549656 -50778691 + L1MB1 LINE L1 5279 6161 -7 220 337 35 0 chr4 151549802 151549888 -50778459 - MIR3 SINE MIR 0 208 120 3846 154 36 0 chr4 151549895 151550555 -50777792 + L1PA15 LINE L1 5480 6163 -2 441 248 18 0 chr4 151550755 151550864 -50777483 + L1ME1 LINE L1 6022 6132 -34 217 333 85 45 chr4 151551418 151551595 -50776752 + MIR SINE MIR 6 189 -73 264 139 38 89 chr4 151551603 151551682 -50776665 + L1MA4A LINE L1 6222 6296 -7 630 293 59 21 chr4 151551701 151551940 -50776407 - MIR SINE MIR 0 262 15 471 177 115 18 chr4 151552708 151552821 -50775526 - L1MB8 LINE L1 0 6178 6055 185 288 18 72 chr4 151553043 151553154 -50775193 + L2 LINE L2 2531 2635 -679 291 243 40 0 chr4 151553372 151553446 -50774901 + MLT1E3 LTR MaLR 2 78 -576 7633 25 0 0 chr4 151553451 151554385 -50773962 - L1PA3 LINE L1 -3 6152 5218 13993 31 1 1 chr4 151554385 151556066 -50772281 + L1PA3 LINE L1 3514 5193 -953 1801 252 49 18 chr4 151556066 151556616 -50771731 + MLT1E3 LTR MaLR 48 615 -9 7349 30 1 0 chr4 151557048 151557921 -50770426 - L1P LINE L1 -1909 4237 3364 4603 18 0 7 chr4 151557921 151558456 -50769891 + L1PA2 LINE L1 5616 6155 0 184 303 61 15 chr4 151558888 151558954 -50769393 + L3 LINE CR1 1369 1437 -140 220 195 0 0 chr4 151559370 151559411 -50768936 + (TG)n Simple_repeat Simple_repeat 1 41 0 299 353 85 32 chr4 151559931 151560214 -50768133 + MLT1K LTR MaLR 278 575 -13 31 26 0 0 chr4 151560236 151560274 -50768073 + AT_rich Low_complexity Low_complexity 1 38 0 455 307 98 37 chr4 151560838 151561729 -50766618 + L1ME3A LINE L1 668 1596 -4619 1274 226 42 45 chr4 151561730 151562110 -50766237 - LTR47B LTR ERVL -64 379 1 1932 134 3 18 chr4 151562110 151562438 -50765909 + L1MA4 LINE L1 5788 6110 -190 360 328 54 29 chr4 151562494 151562698 -50765649 + L1ME3A LINE L1 1868 2076 -4320 26 0 0 0 chr4 151562798 151562824 -50765523 + AT_rich Low_complexity Low_complexity 1 26 0 834 285 50 25 chr4 151562891 151563372 -50764975 + L1ME3A LINE L1 2316 2808 -3407 335 306 78 53 chr4 151563432 151563677 -50764670 + L1ME3A LINE L1 3046 3296 -2919 946 180 12 0 chr4 151563754 151563915 -50764432 + AluJb SINE Alu 129 291 -21 1370 311 84 21 chr4 151563948 151564804 -50763543 + L1ME3A LINE L1 3412 4321 -1894 6330 97 7 2 chr4 151564835 151565755 -50762592 + L1PA14 LINE L1 5236 6159 -2 1960 132 70 12 chr4 151565840 151566181 -50762166 + THE1C LTR MaLR 15 375 0 351 294 39 6 chr4 151566190 151566370 -50761977 + L1ME3A LINE L1 4452 4637 -1578 24 77 0 0 chr4 151566692 151566744 -50761603 + AT_rich Low_complexity Low_complexity 1 52 0 5880 187 23 9 chr4 151566910 151568422 -50759925 - L1MC1 LINE L1 -6 6327 4788 2364 79 0 10 chr4 151568422 151568726 -50759621 - AluY SINE Alu -10 301 1 1965 253 75 8 chr4 151568737 151569400 -50758947 - L1MC1 LINE L1 -2075 4071 3364 267 268 107 9 chr4 151569403 151569515 -50758832 + MER114 LTR ERV 144 266 -382 534 325 83 3 chr4 151570020 151570368 -50757979 + L1ME3A LINE L1 4643 5018 -1197 23 0 0 0 chr4 151570497 151570520 -50757827 + AT_rich Low_complexity Low_complexity 1 23 0 1670 263 13 28 chr4 151570588 151571128 -50757219 + L1ME3A LINE L1 5349 5880 -359 21 26 0 26 chr4 151571135 151571161 -50757186 + AT_rich Low_complexity Low_complexity 1 27 -11 9749 40 0 0 chr4 151571161 151573104 -50755243 - L1PA5 LINE L1 -11 6143 4198 21 26 0 26 chr4 151573104 151573116 -50755231 + AT_rich Low_complexity Low_complexity 27 38 0 254 280 120 23 chr4 151573305 151573480 -50754867 + L1ME3A LINE L1 6034 6225 -14 1084 158 0 0 chr4 151573799 151574108 -50754239 + AluJo SINE Alu 1 309 0 527 148 0 19 chr4 151574110 151574218 -50754129 + (GGA)n Simple_repeat Simple_repeat 3 108 0 1601 133 48 78 chr4 151574498 151574807 -50753540 + AluSx SINE Alu 4 303 -9 666 282 62 10 chr4 151575261 151575704 -50752643 + MLT1J LTR MaLR 19 510 -1 729 277 24 5 chr4 151575883 151576096 -50752251 + L1ME1 LINE L1 5945 6161 -5 1193 277 76 63 chr4 151576150 151576703 -50751644 + HAL1 LINE L1 1354 1913 -594 636 277 83 48 chr4 151576732 151577212 -50751135 + HAL1 LINE L1 2009 2505 -2 334 339 104 22 chr4 151577528 151577758 -50750589 + MIR SINE MIR 8 256 -6 35698 102 7 13 chr4 151578082 151584265 -50744082 + L1PA6 LINE L1 11 6154 0 1559 155 101 19 chr4 151585906 151586223 -50742124 + MER61A LTR ERV1 1 343 0 347 190 51 0 chr4 151586223 151586302 -50742045 + MER61A-int LTR ERV1 1 83 -5134 1881 155 114 18 chr4 151586402 151586796 -50741551 + MER61A-int LTR ERV1 346 777 -4440 * 19859 118 42 21 chr4 151586789 151588847 -50739500 + MER61A-int LTR ERV1 1320 3691 -1526 2252 86 0 23 chr4 151588847 151589150 -50739197 + AluY SINE Alu 1 296 -15 19859 118 42 21 chr4 151589150 151590710 -50737637 + MER61A-int LTR ERV1 3691 5217 0 1313 129 208 41 chr4 151590710 151591004 -50737343 + MER61A LTR ERV1 1 343 0 304 300 55 0 chr4 151591086 151591196 -50737151 + L3b LINE CR1 1288 1403 -180 2294 85 7 7 chr4 151591681 151591988 -50736359 + AluY SINE Alu 1 307 -4 262 263 53 18 chr4 151592220 151592340 -50736007 + MLT1I LTR MaLR 51 172 -237 420 250 40 47 chr4 151592342 151592490 -50735857 + MLT1J2 LTR MaLR 229 375 -75 23 54 0 0 chr4 151593408 151593445 -50734902 + AT_rich Low_complexity Low_complexity 1 37 0 30 59 0 0 chr4 151594338 151594389 -50733958 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr4 151594415 151594444 -50733903 + AT_rich Low_complexity Low_complexity 1 29 0 2011 173 9 0 chr4 151594547 151594889 -50733458 - MER7A DNA MER2_type -1 345 3 2460 77 0 6 chr4 151594940 151595252 -50733095 + AluY SINE Alu 1 310 -1 314 242 180 5 chr4 151595263 151595474 -50732873 + L1ME4a LINE L1 5640 5887 -234 294 281 0 0 chr4 151595526 151595546 -50732801 + (TATATG)n Simple_repeat Simple_repeat 3 22 -62 1328 187 133 7 chr4 151595546 151595846 -50732501 - MER44D DNA MER2_type 0 609 2 294 281 0 0 chr4 151595846 151595907 -50732440 + (TATATG)n Simple_repeat Simple_repeat 21 84 0 23 68 0 0 chr4 151596231 151596275 -50732072 + AT_rich Low_complexity Low_complexity 1 44 0 231 114 0 0 chr4 151596369 151596404 -50731943 + (TG)n Simple_repeat Simple_repeat 2 36 0 327 331 156 13 chr4 151597201 151597355 -50730992 + MIR SINE MIR 17 192 -70 8011 164 47 10 chr4 151597609 151598496 -50729851 + L1MA8 LINE L1 3470 4444 -1702 2219 104 0 25 chr4 151598496 151598814 -50729533 + AluY SINE Alu 1 310 -1 8011 164 47 10 chr4 151598814 151599525 -50728822 + L1MA8 LINE L1 4444 5127 -1019 795 118 15 7 chr4 151599537 151599673 -50728674 + L1MA8 LINE L1 5464 5600 -691 488 214 16 61 chr4 151599681 151599890 -50728457 + Tigger7 DNA MER2_type 1 266 -284 * 492 200 32 0 chr4 151599889 151599984 -50728363 + Tigger7 DNA MER2_type 2390 2487 0 3232 172 13 22 chr4 151599984 151600666 -50727681 + L1MA8 LINE L1 5606 6281 -10 236 282 84 46 chr4 151601137 151601268 -50727079 + L2 LINE L2 2898 3033 -239 580 321 22 0 chr4 151601298 151601482 -50726865 + ERVL LTR ERVL 4771 4958 -806 3140 224 61 15 chr4 151601493 151602155 -50726192 - L1ME1 LINE L1 -4 6162 5532 189 0 0 0 chr4 151602155 151602176 -50726171 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3140 224 61 15 chr4 151602176 151603029 -50725318 - L1ME1 LINE L1 -634 5532 4577 748 295 95 43 chr4 151603652 151604021 -50724326 + LTR16A LTR ERVL 46 433 -17 196 351 0 0 chr4 151604042 151604099 -50724248 - MER5B DNA MER1_type -60 118 62 18795 97 3 0 chr4 151604207 151607727 -50720620 + L1PA7 LINE L1 2591 6149 -5 428 222 27 97 chr4 151608115 151608300 -50720047 + MIR3 SINE MIR 35 206 -2 513 239 87 0 chr4 151609104 151609288 -50719059 + MER20B DNA MER1_type 543 742 -41 244 275 25 0 chr4 151611290 151611370 -50716977 + GA-rich Low_complexity Low_complexity 1 82 0 279 79 0 0 chr4 151611989 151612027 -50716320 + (TC)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr4 151614340 151614361 -50713986 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 151614725 151614746 -50713601 + AT_rich Low_complexity Low_complexity 1 21 0 773 240 0 0 chr4 151615340 151615494 -50712853 + AluJb SINE Alu 137 290 -22 207 0 0 0 chr4 151617286 151617309 -50711038 + (A)n Simple_repeat Simple_repeat 1 23 0 3752 122 58 65 chr4 151618240 151618930 -50709417 + LTR8 LTR ERV1 1 685 -6 24 0 0 0 chr4 151621055 151621079 -50707268 + AT_rich Low_complexity Low_complexity 1 24 0 333 308 103 27 chr4 151621549 151621695 -50706652 + MIR3 SINE MIR 41 197 -11 546 145 0 0 chr4 151621841 151621924 -50706423 - MER39B LTR ERV1 0 653 571 738 126 0 0 chr4 151622145 151622256 -50706091 + FLAM_C SINE Alu 1 111 -32 437 238 27 48 chr4 151622282 151622429 -50705918 + MER41-int LTR ERV1 1620 1763 -3117 286 266 0 0 chr4 151622429 151622493 -50705854 + tRNA-Glu-GAG tRNA tRNA 10 73 -2 553 192 29 6 chr4 151622493 151622635 -50705712 + MER41-int LTR ERV1 969 1659 -4672 303 49 0 0 chr4 151622641 151622682 -50705665 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 988 270 79 38 chr4 151622758 151623076 -50705271 + MER41-int LTR ERV1 1966 2296 -4035 477 177 17 21 chr4 151623060 151623171 -50705176 + MER41-int LTR ERV1 2646 2725 -3221 * 253 185 0 56 chr4 151623164 151623218 -50705129 + MER41-int LTR ERV1 955 1005 -4118 * 369 0 0 0 chr4 151623218 151623259 -50705088 + (A)n Simple_repeat Simple_repeat 1 41 0 459 0 0 0 chr4 151624104 151624155 -50704192 + (A)n Simple_repeat Simple_repeat 1 51 0 244 100 25 0 chr4 151624160 151624200 -50704147 + MER34C LTR ERV1 176 216 -369 1501 191 41 119 chr4 151624348 151624713 -50703634 + MER41-int LTR ERV1 1827 2219 -3727 2257 120 3 0 chr4 151624713 151625022 -50703325 + AluSx SINE Alu 3 312 0 1501 191 41 119 chr4 151625022 151625365 -50702982 + MER41-int LTR ERV1 2219 3225 -2721 26 0 0 0 chr4 151626009 151626035 -50702312 + AT_rich Low_complexity Low_complexity 1 26 0 487 91 13 0 chr4 151626424 151626501 -50701846 + LTR49 LTR ERV1 1 78 -517 2856 290 105 35 chr4 151628963 151629220 -50699127 + L2 LINE L2 636 874 -2440 2187 200 104 78 chr4 151629220 151629890 -50698457 + MER76 LTR ERV 1 688 0 2856 290 105 35 chr4 151629890 151630807 -50697540 + L2 LINE L2 874 1892 -1422 238 317 100 8 chr4 151631563 151631683 -50696664 - LTR67 LTR ERVL 0 557 427 2424 70 3 19 chr4 151633063 151633378 -50694969 + AluSp SINE Alu 1 310 -3 421 308 15 8 chr4 151633573 151633703 -50694644 + MIR SINE MIR 21 151 -111 245 334 159 34 chr4 151635117 151636079 -50692268 + L2 LINE L2 1427 2526 -788 369 0 0 0 chr4 151636079 151636120 -50692227 + (CA)n Simple_repeat Simple_repeat 2 42 0 245 334 159 34 chr4 151636120 151636184 -50692163 + L2 LINE L2 2526 2581 -733 459 312 65 17 chr4 151636223 151636454 -50691893 + MIR SINE MIR 5 246 -16 406 328 136 12 chr4 151636454 151636975 -50691372 + L2 LINE L2 2613 3204 -68 287 242 18 158 chr4 151637307 151637472 -50690875 - MER102a DNA MER1_type 0 330 189 2206 122 144 5 chr4 151638016 151638392 -50689955 + MSTA LTR MaLR 1 428 0 9111 168 31 16 chr4 151638392 151640013 -50688334 + MSTA-int LTR MaLR 1 1646 -5 1908 146 179 0 chr4 151640018 151640381 -50687966 + MSTA LTR MaLR 1 428 0 235 263 18 0 chr4 151640608 151640665 -50687682 - L2 LINE L2 0 3313 3256 284 265 102 14 chr4 151641065 151641212 -50687135 - MER112 DNA MER1_type -3 257 98 245 309 99 61 chr4 151641306 151641568 -50686779 + L2 LINE L2 1838 2109 -1205 716 273 84 34 chr4 151641816 151642113 -50686234 + L2 LINE L2 3002 3313 0 1602 188 67 50 chr4 151642235 151642386 -50685961 + MLT1A1 LTR MaLR 1 148 -217 1913 171 0 0 chr4 151642386 151642695 -50685652 + AluSx SINE Alu 1 309 -3 1602 188 67 50 chr4 151642695 151642884 -50685463 + MLT1A1 LTR MaLR 148 347 -18 417 257 33 66 chr4 151643442 151643594 -50684753 - MIR SINE MIR -70 192 46 612 309 170 25 chr4 151643701 151644018 -50684329 - L2 LINE L2 -778 2536 2174 209 319 129 25 chr4 151644021 151644184 -50684163 - L2 LINE L2 -1387 1927 1748 556 187 13 77 chr4 151644626 151644781 -50683566 + MER103 DNA DNA 7 151 -15 745 220 54 16 chr4 151645842 151646028 -50682319 + MER3 DNA MER1_type 1 193 -16 1625 284 93 13 chr4 151646319 151646858 -50681489 - MLT1G1 LTR MaLR -1 594 13 446 209 64 27 chr4 151647433 151647543 -50680804 + MLT1H LTR MaLR 148 261 -288 205 267 48 76 chr4 151647632 151647737 -50680610 - MIR SINE MIR -57 205 104 480 265 82 55 chr4 151647888 151648107 -50680240 - MIR SINE MIR -1 261 37 3273 60 0 0 chr4 151648107 151648522 -50679825 + L1PA6 LINE L1 5739 6153 -1 1893 158 3 3 chr4 151649942 151650245 -50678102 - AluJb SINE Alu -9 303 1 1116 203 114 29 chr4 151651018 151651334 -50677013 + MER2 DNA MER2_type 2 344 0 348 83 0 0 chr4 151651334 151651382 -50676965 + (TA)n Simple_repeat Simple_repeat 1 48 0 441 0 0 0 chr4 151651383 151651432 -50676915 + (TC)n Simple_repeat Simple_repeat 2 50 0 180 0 0 0 chr4 151651431 151651451 -50676896 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 383 121 0 0 chr4 151651453 151651511 -50676836 - Alu SINE Alu 0 302 245 312 27 0 0 chr4 151651515 151651552 -50676795 + (TG)n Simple_repeat Simple_repeat 1 37 0 2376 66 0 3 chr4 151652162 151652451 -50675896 + AluSc SINE Alu 1 288 -21 192 200 0 0 chr4 151652721 151652761 -50675586 + (TA)n Simple_repeat Simple_repeat 1 40 0 23 68 0 0 chr4 151655548 151655592 -50672755 + AT_rich Low_complexity Low_complexity 1 44 0 350 230 91 75 chr4 151657402 151657589 -50670758 + MIR SINE MIR 73 262 0 225 357 139 0 chr4 151657969 151658098 -50670249 - L2 LINE L2 -8 3264 3118 1783 169 11 0 chr4 151658220 151658499 -50669848 + AluJb SINE Alu 1 282 -30 1623 201 47 94 chr4 151659020 151659508 -50668839 + MLT1C LTR MaLR 1 465 -2 1850 179 53 3 chr4 151659600 151659919 -50668428 - MER1B DNA MER1_type -2 335 1 1408 115 0 18 chr4 151661590 151661808 -50666539 - L1PA10 LINE L1 -5 6163 5950 32 26 0 0 chr4 151662939 151662978 -50665369 + AT_rich Low_complexity Low_complexity 1 39 0 1832 281 91 24 chr4 151663070 151664633 -50663714 + L1ME3A LINE L1 4239 5919 -251 1602 218 54 5 chr4 151664633 151665005 -50663342 + MLT1B LTR MaLR 1 390 0 1832 281 91 24 chr4 151665005 151665017 -50663330 + L1ME3A LINE L1 5919 5929 -241 460 278 26 13 chr4 151665031 151665182 -50663165 + L1ME3A LINE L1 5983 6135 -35 207 0 0 0 chr4 151665259 151665282 -50663065 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2062 117 4 0 chr4 151665284 151665565 -50662782 - AluSq SINE Alu -31 282 1 524 275 79 4 chr4 151666064 151666280 -50662067 - MIR SINE MIR -36 226 3 387 0 0 0 chr4 151666545 151666588 -50661759 + (CA)n Simple_repeat Simple_repeat 2 44 0 441 273 167 0 chr4 151666696 151666846 -50661501 + MER5A DNA MER1_type 9 183 -6 4131 29 0 0 chr4 151667078 151667567 -50660780 - L1PA4 LINE L1 -1653 4493 4005 7624 27 6 0 chr4 151667567 151669242 -50659105 + L1PA4 LINE L1 4473 6155 0 871 316 113 48 chr4 151670963 151671750 -50656597 + L1MEd LINE L1 414 1290 -5240 2297 167 55 2 chr4 151671750 151672151 -50656196 - MSTB LTR MaLR 0 426 5 871 316 113 48 chr4 151672151 151672439 -50655908 + L1MEd LINE L1 1290 1558 -4972 295 203 78 0 chr4 151672458 151672522 -50655825 - MER96 DNA MER1_type? 0 175 107 445 281 134 36 chr4 151672749 151673084 -50655263 + LTR16A1 LTR ERVL 90 457 0 412 352 97 18 chr4 151673111 151673402 -50654945 + L1MEd LINE L1 1785 2141 -4461 2911 272 74 64 chr4 151673685 151675998 -50652349 + L1MEc LINE L1 37 2327 -3888 837 236 61 9 chr4 151675998 151676210 -50652137 + MER58A DNA MER1_type 2 224 0 2911 272 74 64 chr4 151676210 151676821 -50651526 + L1MEc LINE L1 2327 2931 -3284 7341 98 3 5 chr4 151676821 151678653 -50649694 + L1PA7 LINE L1 4318 6150 -4 2911 272 74 64 chr4 151678653 151679373 -50648974 + L1MEc LINE L1 2931 3585 -2630 1659 194 3 0 chr4 151679480 151679764 -50648583 + AluSx SINE Alu 1 285 -27 205 152 76 0 chr4 151679764 151679830 -50648517 + (TA)n Simple_repeat Simple_repeat 1 71 0 214 103 84 19 chr4 151679841 151679948 -50648399 + (TA)n Simple_repeat Simple_repeat 2 115 0 21 0 0 0 chr4 151680349 151680370 -50647977 + AT_rich Low_complexity Low_complexity 1 21 0 225 278 57 74 chr4 151681921 151682097 -50646250 + L3b LINE CR1 1216 1388 -195 213 210 284 25 chr4 151685570 151685651 -50642696 + MIR SINE MIR 96 197 -65 1059 280 153 12 chr4 151686642 151687074 -50641273 + MLT1L LTR MaLR 119 611 -4 435 328 98 19 chr4 151687425 151687678 -50640669 + L3 LINE CR1 748 1020 -557 278 336 13 74 chr4 151687678 151687720 -50640627 + MER5B DNA MER1_type 4 47 -131 4051 154 46 31 chr4 151687720 151688529 -50639818 - L1MC1 LINE L1 -1 6332 5512 278 336 13 74 chr4 151688529 151688635 -50639712 + MER5B DNA MER1_type 47 143 -35 1050 315 47 57 chr4 151688653 151689228 -50639119 + L3 LINE CR1 1003 1571 -6 1993 143 0 0 chr4 151689301 151689601 -50638746 + AluSx SINE Alu 1 300 -12 300 272 154 50 chr4 151689651 151689836 -50638511 - MIR SINE MIR -19 243 39 187 333 0 48 chr4 151690264 151690348 -50637999 + L2 LINE L2 3234 3313 0 208 286 0 0 chr4 151690359 151690408 -50637939 - MIR SINE MIR -138 124 76 270 0 0 0 chr4 151690456 151690486 -50637861 + (A)n Simple_repeat Simple_repeat 1 30 0 298 280 14 133 chr4 151691367 151691578 -50636769 + L2 LINE L2 2895 3080 -192 1410 196 37 55 chr4 151693435 151693762 -50634585 + MLT1A1 LTR MaLR 40 360 -5 205 259 0 37 chr4 151693766 151693820 -50634527 + MIR SINE MIR 85 136 -72 1758 120 53 50 chr4 151697007 151697308 -50631039 - AluSx SINE Alu -10 302 1 291 349 59 26 chr4 151697589 151697741 -50630606 - MIR3 SINE MIR -49 159 3 511 253 32 44 chr4 151698060 151698218 -50630129 + MIR SINE MIR 3 158 -104 479 304 129 36 chr4 151698219 151698528 -50629819 - LTR16C LTR ERVL 0 491 154 402 233 19 10 chr4 151698716 151698819 -50629528 + MIR SINE MIR 159 262 0 184 333 30 0 chr4 151699066 151699132 -50629215 - L2 LINE L2 -217 3055 2988 360 250 12 0 chr4 151699205 151699289 -50629058 + MIR SINE MIR 153 237 -25 240 333 0 52 chr4 151699288 151699384 -50628963 - L2 LINE L2 -299 2973 2883 * 211 409 26 7 chr4 151699555 151699709 -50628638 - L2 LINE L2 -634 2680 2524 2032 143 3 0 chr4 151700264 151700564 -50627783 + AluSx SINE Alu 1 301 -11 23 54 0 0 chr4 151700925 151700962 -50627385 + AT_rich Low_complexity Low_complexity 1 37 0 970 296 78 69 chr4 151701749 151702286 -50626061 - L2 LINE L2 -337 2977 2436 571 231 65 24 chr4 151702641 151702810 -50625537 - L2 LINE L2 -939 2375 2200 1932 140 6 22 chr4 151703394 151703708 -50624639 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr4 151703840 151703862 -50624485 + AT_rich Low_complexity Low_complexity 1 22 0 202 200 0 0 chr4 151704090 151704125 -50624222 + (CA)n Simple_repeat Simple_repeat 2 36 0 495 294 56 6 chr4 151706162 151706342 -50622005 - L3 LINE CR1 -150 1427 1239 3293 190 77 8 chr4 151706491 151707221 -50621126 - L1MC3 LINE L1 -1 7784 7005 244 175 0 53 chr4 151707213 151707270 -50621077 - L1M LINE L1 -937 5407 5354 * 354 143 0 0 chr4 151707270 151707333 -50621014 + (TCCCC)n Simple_repeat Simple_repeat 2 64 0 736 159 0 0 chr4 151707333 151707446 -50620901 - FLAM_C SINE Alu -19 124 12 262 160 170 53 chr4 151707450 151707544 -50620803 - L1M LINE L1 -977 5367 5263 462 18 0 0 chr4 151708373 151708428 -50619919 + (TG)n Simple_repeat Simple_repeat 2 56 0 465 329 160 5 chr4 151708597 151708816 -50619531 - MIR SINE MIR -8 254 2 363 260 138 39 chr4 151708823 151709004 -50619343 + HAL1 LINE L1 996 1194 -1313 623 301 134 27 chr4 151709090 151709568 -50618779 + HAL1 LINE L1 1384 1912 -595 301 250 8 76 chr4 151709913 151710045 -50618302 + HAL1b LINE L1 747 869 -479 288 111 0 0 chr4 151710329 151710374 -50617973 + (TG)n Simple_repeat Simple_repeat 2 46 0 23 54 0 0 chr4 151710546 151710583 -50617764 + AT_rich Low_complexity Low_complexity 1 37 0 735 198 69 10 chr4 151710777 151710979 -50617368 - L1M4 LINE L1 -2077 4069 3856 218 361 0 14 chr4 151711042 151711114 -50617233 - L3 LINE CR1 -1469 108 38 281 238 100 0 chr4 151711444 151711524 -50616823 + MER69 DNA AcHobo 1 88 -2438 522 235 40 20 chr4 151711644 151711793 -50616554 + MER69 DNA AcHobo 2373 2524 -2 1589 232 163 16 chr4 151712129 151712646 -50615701 + MLT1E LTR MaLR 1 593 0 863 218 29 12 chr4 151712873 151713043 -50615304 - MER45A DNA AcHobo 0 178 6 228 290 154 31 chr4 151713063 151713225 -50615122 + MIR SINE MIR 78 259 -3 207 277 0 15 chr4 151714727 151714792 -50613555 + GA-rich Low_complexity Low_complexity 3 66 0 2122 113 0 7 chr4 151715530 151715831 -50612516 + AluSg1 SINE Alu 1 299 -10 318 336 27 0 chr4 151716430 151716540 -50611807 + L3 LINE CR1 1345 1457 -120 26 0 0 0 chr4 151716972 151716998 -50611349 + AT_rich Low_complexity Low_complexity 1 26 0 6618 20 0 0 chr4 151716998 151717755 -50610592 - L1PA3 LINE L1 -3 6152 5396 5672 22 1 0 chr4 151717751 151718432 -50609915 + L1PA3 LINE L1 4714 5395 -751 * 4010 241 47 27 chr4 151719016 151719094 -50609253 + L1MCb LINE L1 4 79 -6485 1946 141 0 0 chr4 151719094 151719425 -50608922 + AluSx SINE Alu 1 331 0 4010 241 47 27 chr4 151719425 151721030 -50607317 + L1MCb LINE L1 79 1718 -4846 3402 181 120 96 chr4 151721028 151721503 -50606844 + L1MC3 LINE L1 6610 7072 -713 * 281 289 13 0 chr4 151721503 151721579 -50606768 + MLT1F1 LTR MaLR 35 111 -456 3402 181 120 96 chr4 151721579 151722169 -50606178 + L1MC3 LINE L1 7072 7777 -8 1569 205 97 6 chr4 151722209 151722570 -50605777 + MSTD LTR MaLR 3 396 0 1846 119 3 3 chr4 151723486 151723772 -50604575 - L1PB1 LINE L1 0 6151 5866 7323 177 20 8 chr4 151723887 151725614 -50602733 + L1P5 LINE L1 3772 5520 -636 203 0 0 36 chr4 151725672 151725700 -50602647 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 25 0 0 0 chr4 151725735 151725760 -50602587 + AT_rich Low_complexity Low_complexity 1 25 0 183 80 0 0 chr4 151726325 151726350 -50601997 + (CATTT)n Simple_repeat Simple_repeat 3 27 0 827 174 45 19 chr4 151727110 151727265 -50601082 + AluJo SINE Alu 121 279 -33 24 32 0 0 chr4 151727265 151727296 -50601051 + AT_rich Low_complexity Low_complexity 1 31 0 437 248 40 0 chr4 151727432 151727557 -50600790 - L1ME4a LINE L1 -234 5887 5758 208 331 48 97 chr4 151728292 151728416 -50599931 + L2 LINE L2 3147 3264 -8 858 231 49 23 chr4 151728711 151729061 -50599286 + L1ME3A LINE L1 4263 4621 -1525 255 191 0 0 chr4 151729074 151729142 -50599205 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 673 242 123 70 chr4 151729142 151729787 -50598560 + L1ME3A LINE L1 4631 5309 -837 404 293 104 19 chr4 151729976 151730246 -50598101 + L1ME3A LINE L1 5659 5951 -219 339 327 128 0 chr4 151730554 151730710 -50597637 + MIR SINE MIR 86 261 -1 933 127 0 0 chr4 151730926 151731085 -50597262 + AluSp/q SINE Alu 161 319 0 213 182 0 0 chr4 151731113 151731146 -50597201 + (CAG)n Simple_repeat Simple_repeat 1 33 0 1534 139 122 57 chr4 151731521 151731873 -50596474 + THE1C LTR MaLR 1 375 0 406 131 0 0 chr4 151731880 151731941 -50596406 + FLAM_A SINE Alu 41 101 -41 4196 39 10 0 chr4 151732041 151732905 -50595442 - L1P2 LINE L1 -428 5727 4859 1557 117 4 4 chr4 151732900 151733130 -50595217 + L1P LINE L1 10 239 -5907 * 1754 190 69 96 chr4 151733230 151733750 -50594597 - MER45B DNA AcHobo -322 718 213 336 237 32 21 chr4 151733760 151733853 -50594494 - MER45B DNA AcHobo -933 107 14 659 96 0 0 chr4 151734304 151734387 -50593960 + MSTA LTR MaLR 135 217 -147 1949 53 4 25 chr4 151734411 151734655 -50593692 + AluY SINE Alu 10 248 -63 748 107 0 0 chr4 151734755 151734858 -50593489 + MSTA LTR MaLR 326 428 0 5182 65 3 3 chr4 151735023 151735683 -50592664 + PABL_A LTR ERV1 1 660 0 24 85 0 0 chr4 151736401 151736460 -50591887 + AT_rich Low_complexity Low_complexity 1 59 0 230 293 114 7 chr4 151736473 151736613 -50591734 - L1ME4a LINE L1 -10 6111 5957 297 283 19 9 chr4 151736819 151736925 -50591422 - L1ME4a LINE L1 -401 5720 5614 745 333 69 42 chr4 151738056 151738156 -50590191 - L2 LINE L2 -641 2673 2577 1873 150 35 62 chr4 151738156 151738557 -50589790 + MLT1B LTR MaLR 1 390 0 745 333 69 42 chr4 151738557 151738903 -50589444 - L2 LINE L2 -737 2577 2215 320 178 79 40 chr4 151739112 151739213 -50589134 + MLT1L LTR MaLR 125 229 -386 23 33 0 0 chr4 151739680 151739710 -50588637 + AT_rich Low_complexity Low_complexity 1 30 0 2324 96 3 10 chr4 151739796 151740110 -50588237 + AluSx SINE Alu 1 312 0 293 325 5 44 chr4 151740578 151740718 -50587629 + L1P LINE L1 3609 3753 -2393 1855 109 0 8 chr4 151740718 151740966 -50587381 + AluSx SINE Alu 35 280 -32 405 0 0 0 chr4 151740966 151741011 -50587336 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 293 325 5 44 chr4 151741011 151741075 -50587272 + L1P LINE L1 3751 3806 -2340 504 318 117 47 chr4 151741125 151741575 -50586772 + L2 LINE L2 2709 3204 -109 2041 141 0 0 chr4 151741575 151741873 -50586474 - AluJb SINE Alu -11 301 4 504 318 117 47 chr4 151741873 151741956 -50586391 + L2 LINE L2 3204 3280 -33 337 348 57 9 chr4 151742181 151742391 -50585956 + L1M4 LINE L1 4085 4304 -1842 2474 135 33 23 chr4 151742395 151742825 -50585522 + Tigger2a DNA MER2_type 1 434 0 2402 69 3 0 chr4 151742908 151743214 -50585133 + AluY SINE Alu 1 307 -4 1671 153 3 14 chr4 151743368 151743650 -50584697 + AluJb SINE Alu 1 279 -33 829 73 8 8 chr4 151743653 151743776 -50584571 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 198 0 0 0 chr4 151745013 151745035 -50583312 + (CA)n Simple_repeat Simple_repeat 2 23 0 22 56 0 0 chr4 151745660 151745696 -50582651 + AT_rich Low_complexity Low_complexity 1 36 0 235 103 0 0 chr4 151746136 151746175 -50582172 - L1MA3 LINE L1 0 6305 6267 2274 110 0 0 chr4 151746797 151747096 -50581251 + AluSx SINE Alu 1 299 -13 490 133 9 38 chr4 151747101 151747206 -50581141 + L1MB3 LINE L1 6081 6182 -1 21 36 0 0 chr4 151748591 151748619 -50579728 + AT_rich Low_complexity Low_complexity 1 28 0 275 274 57 28 chr4 151748709 151748815 -50579532 + L2 LINE L2 3162 3270 -2 3922 187 65 21 chr4 151751537 151752392 -50575955 + L1MC3 LINE L1 6889 7781 -4 294 180 0 0 chr4 151753552 151753613 -50574734 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 446 91 146 64 chr4 151753811 151753921 -50574426 + MLT1C LTR MaLR 1 119 -348 180 0 0 0 chr4 151755351 151755371 -50572976 + (TG)n Simple_repeat Simple_repeat 2 21 0 569 309 96 33 chr4 151755584 151755950 -50572397 + L2 LINE L2 2923 3311 -2 192 77 0 0 chr4 151756683 151756709 -50571638 + (CA)n Simple_repeat Simple_repeat 2 27 0 474 224 122 13 chr4 151756833 151756989 -50571358 + LTR16A1 LTR ERVL 285 457 0 2703 117 28 35 chr4 151757064 151757499 -50570848 + MSTB1 LTR MaLR 1 432 0 218 281 16 0 chr4 151758595 151758659 -50569688 + MIR SINE MIR 119 183 -79 770 322 126 0 chr4 151758836 151759091 -50569256 + L3 LINE CR1 1274 1560 -17 399 218 82 27 chr4 151759126 151759236 -50569111 - MIR SINE MIR -24 238 123 2130 147 6 18 chr4 151759262 151759603 -50568744 + MER1B DNA MER1_type 1 337 0 1092 275 39 31 chr4 151759739 151760125 -50568222 - MLT1I LTR MaLR 0 409 21 22 35 0 0 chr4 151760302 151760331 -50568016 + AT_rich Low_complexity Low_complexity 1 29 0 3022 156 14 8 chr4 151760719 151761178 -50567169 + MLT2B2 LTR ERVL 1 465 -50 383 92 15 0 chr4 151761178 151761243 -50567104 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 3022 156 14 8 chr4 151761243 151761291 -50567056 + MLT2B2 LTR ERVL 465 511 -4 247 371 68 86 chr4 151762354 151762381 -50565966 - L2 LINE L2 -36 3236 3210 252 0 0 0 chr4 151762381 151762409 -50565938 + (CATAT)n Simple_repeat Simple_repeat 3 30 0 247 371 68 86 chr4 151762409 151762775 -50565572 - L2 LINE L2 -62 3210 2850 223 342 13 0 chr4 151762804 151762880 -50565467 - MIR3 SINE MIR -7 201 125 198 0 0 0 chr4 151763406 151763428 -50564919 + (CA)n Simple_repeat Simple_repeat 1 22 0 31 0 0 0 chr4 151763472 151763503 -50564844 + AT_rich Low_complexity Low_complexity 1 31 0 400 359 0 0 chr4 151764694 151764811 -50563536 - L2 LINE L2 -2 3270 3154 346 340 119 57 chr4 151765023 151765408 -50562939 + L1MEc LINE L1 104 512 -5607 368 329 51 10 chr4 151765446 151765741 -50562606 + L1MEc LINE L1 592 898 -5221 461 268 62 39 chr4 151765777 151765956 -50562391 + LTR33 LTR ERVL 1 183 -338 576 315 72 22 chr4 151766097 151766418 -50561929 + LTR33 LTR ERVL 1 337 -184 414 290 84 4 chr4 151766474 151766721 -50561626 + L1MEc LINE L1 1419 1626 -893 * 441 311 87 21 chr4 151766716 151767050 -50561297 + L1M4 LINE L1 4222 4577 -1569 214 195 0 0 chr4 151767055 151767096 -50561251 + (TA)n Simple_repeat Simple_repeat 2 42 0 25 31 0 0 chr4 151767103 151767135 -50561212 + AT_rich Low_complexity Low_complexity 1 32 0 671 333 121 22 chr4 151767135 151767643 -50560704 - L2 LINE L2 -1274 2040 1465 1739 166 0 33 chr4 151767643 151767950 -50560397 + AluJo SINE Alu 5 301 -11 671 333 121 22 chr4 151767950 151768029 -50560318 - L2 LINE L2 -1849 1465 1395 25 31 0 0 chr4 151770406 151770438 -50557909 + AT_rich Low_complexity Low_complexity 1 32 0 589 131 0 0 chr4 151770542 151770626 -50557721 - FLAM_A SINE Alu -15 127 44 309 320 41 0 chr4 151773002 151773149 -50555198 + L1ME4a LINE L1 4506 4658 -1488 192 125 0 0 chr4 151773319 151773351 -50554996 + (TG)n Simple_repeat Simple_repeat 2 33 0 243 0 0 0 chr4 151773629 151773656 -50554691 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr4 151773706 151773727 -50554620 + AT_rich Low_complexity Low_complexity 1 21 0 510 279 96 61 chr4 151773759 151773793 -50554554 + L1ME4a LINE L1 5265 5296 -825 1932 116 36 0 chr4 151773793 151774098 -50554249 + AluSq SINE Alu 1 315 0 510 279 96 61 chr4 151774098 151774224 -50554123 + L1ME4a LINE L1 5296 5416 -705 345 111 0 0 chr4 151774224 151774278 -50554069 - L1PB4 LINE L1 0 6156 6103 556 304 32 12 chr4 151774278 151774531 -50553816 + MIR SINE MIR 5 262 0 510 279 96 61 chr4 151774531 151774940 -50553407 + L1ME4a LINE L1 5415 5857 -264 247 228 13 76 chr4 151774959 151775038 -50553309 + L2 LINE L2 3232 3305 -8 1838 118 86 4 chr4 151776084 151776363 -50551984 + AluSx SINE Alu 1 302 -10 608 253 35 6 chr4 151776553 151776727 -50551620 + L1MC5 LINE L1 7747 7925 -36 23 97 0 0 chr4 151778602 151778674 -50549673 + AT_rich Low_complexity Low_complexity 1 72 0 386 63 0 32 chr4 151778862 151778925 -50549422 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 208 79 114 9 chr4 151779425 151779539 -50548808 + (TA)n Simple_repeat Simple_repeat 1 126 0 277 83 94 10 chr4 151779546 151779642 -50548705 + (TATAA)n Simple_repeat Simple_repeat 3 106 0 304 232 80 51 chr4 151779642 151779780 -50548567 + L1MCa LINE L1 1950 2091 -4335 299 101 50 20 chr4 151779780 151779879 -50548468 + (TA)n Simple_repeat Simple_repeat 1 102 0 22 0 0 0 chr4 151779938 151779960 -50548387 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr4 151780156 151780192 -50548155 + AT_rich Low_complexity Low_complexity 1 36 0 258 32 0 0 chr4 151782638 151782669 -50545678 + (CGG)n Simple_repeat Simple_repeat 1 31 0 288 0 0 0 chr4 151784717 151784749 -50543598 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 235 354 24 0 chr4 151784776 151784858 -50543489 + L2 LINE L2 3184 3267 -5 252 59 0 0 chr4 151785266 151785300 -50543047 + (TG)n Simple_repeat Simple_repeat 2 35 0 205 291 10 19 chr4 151786355 151786458 -50541889 + CT-rich Low_complexity Low_complexity 2 103 0 1925 150 22 50 chr4 151787564 151787965 -50540382 - MLT1B LTR MaLR 0 390 1 2393 90 0 7 chr4 151788932 151789242 -50539105 - AluY SINE Alu 0 311 4 437 217 50 25 chr4 151790010 151790130 -50538217 + MIR SINE MIR 50 172 -90 340 277 8 42 chr4 151790496 151790615 -50537732 - L2 LINE L2 -4 3268 3154 1057 160 5 30 chr4 151790733 151790933 -50537414 - MLT1B LTR MaLR -195 195 1 1935 153 15 25 chr4 151790973 151791378 -50536969 + MER65A LTR ERV1 45 445 0 210 326 97 82 chr4 151791648 151791844 -50536503 + L2 LINE L2 2988 3186 -86 1192 204 44 47 chr4 151793597 151793940 -50534407 - MLT1A1 LTR MaLR -11 354 13 2171 108 17 0 chr4 151794877 151795172 -50533175 + AluSq SINE Alu 1 300 -13 1705 288 96 66 chr4 151796244 151796418 -50531929 - ERVL LTR ERVL -2879 2885 2718 1004 216 44 0 chr4 151796418 151796622 -50531725 + MER58C DNA MER1_type 2 214 -1 1705 288 96 66 chr4 151796622 151797667 -50530680 - ERVL LTR ERVL -3046 2718 1629 276 288 34 20 chr4 151798158 151798304 -50530043 - ERVL LTR ERVL -4468 1017 870 683 78 0 0 chr4 151798547 151798656 -50529691 - L1P LINE L1 -2202 3944 3836 6952 64 1 0 chr4 151798656 151799893 -50528454 + L1PA5 LINE L1 4918 6154 0 4039 170 20 11 chr4 151800852 151801659 -50526688 - L1MB3 LINE L1 -85 6098 5285 2358 56 0 10 chr4 151802558 151802860 -50525487 + AluY SINE Alu 1 299 -12 11729 123 12 16 chr4 151804334 151806972 -50521375 + L1PA7 LINE L1 8 2639 -3822 378 0 0 0 chr4 151806972 151807014 -50521333 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 11729 123 12 16 chr4 151807014 151807154 -50521193 + L1PA7 LINE L1 2639 2778 -3683 10422 93 5 2 chr4 151807155 151809445 -50518902 + L1PA7 LINE L1 4184 6466 -3 24 32 0 0 chr4 151810069 151810100 -50518247 + AT_rich Low_complexity Low_complexity 1 31 0 873 262 45 20 chr4 151810504 151810748 -50517599 + MIR SINE MIR 13 262 0 736 243 40 17 chr4 151810990 151811291 -50517056 + L1MB8 LINE L1 4408 4715 -1431 * 6992 213 80 44 chr4 151811286 151814252 -50514095 + L1P3 LINE L1 5 3233 -3228 537 135 0 11 chr4 151814256 151814345 -50514002 + L1PA8 LINE L1 6074 6161 -11 1252 200 27 50 chr4 151814413 151814465 -50513882 + AluJb SINE Alu 1 53 -259 2242 106 50 31 chr4 151814465 151814822 -50513525 + THE1B LTR MaLR 1 364 0 1252 200 27 50 chr4 151814822 151815069 -50513278 + AluJb SINE Alu 53 293 -19 247 214 0 0 chr4 151815070 151815126 -50513221 + L1MB8 LINE L1 4741 4796 -1350 2183 232 45 25 chr4 151815159 151816066 -50512281 + L1MB8 LINE L1 4900 5822 -344 829 284 3 25 chr4 151816196 151816513 -50511834 + L1MB8 LINE L1 5862 6171 -7 1436 213 31 3 chr4 151816516 151816840 -50511507 + L1MCa LINE L1 14 346 -6080 1180 206 95 16 chr4 151816853 151817168 -50511179 + L1MCa LINE L1 571 910 -5516 301 234 106 21 chr4 151817169 151817263 -50511084 - L1M4 LINE L1 -1396 4750 4649 515 270 40 46 chr4 151819160 151819334 -50509013 - MER5A DNA MER1_type 0 189 17 316 360 53 0 chr4 151819570 151819684 -50508663 - L2 LINE L2 0 3272 3153 393 268 130 14 chr4 151819840 151819978 -50508369 - MIR SINE MIR -14 248 95 357 244 0 22 chr4 151820152 151820242 -50508105 + MLT1I LTR MaLR 118 205 -204 209 304 110 68 chr4 151821133 151821396 -50506951 + L2 LINE L2 3019 3292 -21 236 313 76 38 chr4 151821498 151821629 -50506718 - L2 LINE L2 -2 3311 3176 3052 245 112 2 chr4 151821659 151822508 -50505839 + L2 LINE L2 1876 2817 -497 26 0 0 0 chr4 151824208 151824234 -50504113 + AT_rich Low_complexity Low_complexity 1 26 0 310 251 191 8 chr4 151824291 151824526 -50503821 + HAL1b LINE L1 357 634 -714 204 302 105 12 chr4 151824863 151824949 -50503398 - MER5A DNA MER1_type -87 102 9 2005 186 23 64 chr4 151825241 151825499 -50502848 - L1MB7 LINE L1 -5 6179 5912 1897 174 58 0 chr4 151825499 151825844 -50502503 + MLT1A1 LTR MaLR 1 365 0 2005 186 23 64 chr4 151825844 151826048 -50502299 - L1MB7 LINE L1 -272 5912 5741 1694 203 0 20 chr4 151826048 151826349 -50501998 - AluJo SINE Alu -17 295 1 2005 186 23 64 chr4 151826349 151826445 -50501902 - L1MB7 LINE L1 -443 5741 5643 219 186 0 0 chr4 151826445 151826488 -50501859 + (TA)n Simple_repeat Simple_repeat 1 43 0 345 221 58 12 chr4 151826488 151826574 -50501773 - L1MC4 LINE L1 -1339 6703 6614 319 86 0 35 chr4 151826576 151826634 -50501713 + (TA)n Simple_repeat Simple_repeat 1 56 0 859 194 43 29 chr4 151826636 151826723 -50501624 - L1MB7 LINE L1 -498 5672 5588 1915 201 51 5 chr4 151826723 151827132 -50501215 - MSTC LTR MaLR 0 428 1 859 194 43 29 chr4 151827132 151827274 -50501073 - L1MB7 LINE L1 -582 5588 5440 444 313 66 54 chr4 151827280 151827809 -50500538 - L1MB7 LINE L1 -860 5286 4726 23 0 0 0 chr4 151827809 151827832 -50500515 + AT_rich Low_complexity Low_complexity 1 23 0 444 313 66 54 chr4 151827832 151827888 -50500459 - L1MB7 LINE L1 -1420 4726 4672 1284 98 0 0 chr4 151827956 151828120 -50500227 + AluY SINE Alu 133 296 -15 5926 142 5 15 chr4 151828121 151829239 -50499108 - L1PA15 LINE L1 -17 6799 5700 2250 127 122 10 chr4 151829239 151829624 -50498723 + MSTA LTR MaLR 1 428 0 8003 171 82 9 chr4 151829626 151831096 -50497251 + MSTA-int LTR MaLR 3 1580 0 2117 132 137 11 chr4 151831096 151831476 -50496871 + MSTA LTR MaLR 1 428 0 11896 214 19 7 chr4 151831476 151834234 -50494113 - L1PA15 LINE L1 -1093 5704 2915 4307 121 177 99 chr4 151834234 151835657 -50492690 + pTR5 LTR ERV1 743 2438 0 10763 221 28 22 chr4 151835672 151838443 -50489904 - L1PA15 LINE L1 -3891 2906 102 339 285 60 89 chr4 151838448 151838692 -50489655 - L1MB7 LINE L1 -1481 4665 4416 1718 203 3 3 chr4 151838692 151838998 -50489349 - AluJb SINE Alu -6 306 1 339 285 60 89 chr4 151838998 151839419 -50488928 - L1MB7 LINE L1 -1730 4416 4019 840 327 36 14 chr4 151839576 151840077 -50488270 - L1MB7 LINE L1 -2190 3956 3445 755 298 76 0 chr4 151840419 151840657 -50487690 + MLT1J LTR MaLR 20 275 -236 2146 147 61 48 chr4 151840657 151840701 -50487646 - L1MA4 LINE L1 -11 6289 6247 500 0 17 0 chr4 151840701 151840761 -50487586 + (TTTA)n Simple_repeat Simple_repeat 4 64 0 2024 130 0 7 chr4 151840764 151841049 -50487298 - AluSq SINE Alu -30 283 1 2146 147 61 48 chr4 151841049 151841442 -50486905 - L1MA4 LINE L1 -54 6246 5842 1172 145 22 57 chr4 151841449 151841676 -50486671 - THE1B LTR MaLR -142 222 4 9592 214 25 50 chr4 151841683 151845751 -50482596 - L1 LINE L1 -1629 5936 2097 420 380 36 28 chr4 151846187 151846579 -50481768 - L1 LINE L1 -5886 1610 1216 337 328 69 0 chr4 151848836 151848952 -50479395 + L2 LINE L2 3189 3312 -1 1715 165 45 28 chr4 151849683 151850041 -50478306 - THE1B LTR MaLR 0 364 1 1904 164 16 26 chr4 151850445 151850822 -50477525 - THE1C LTR MaLR -2 373 1 352 140 0 0 chr4 151851220 151851277 -50477070 - MLT2B1 LTR ERVL 0 520 464 216 97 0 0 chr4 151851288 151851319 -50477028 + (CA)n Simple_repeat Simple_repeat 2 32 0 232 48 48 0 chr4 151851495 151851537 -50476810 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 3942 24 0 0 chr4 151851548 151852007 -50476340 - L1PA2 LINE L1 0 6155 5697 8104 23 0 0 chr4 151852007 151853280 -50475067 + L1PA2 LINE L1 4423 5695 -460 27 62 0 0 chr4 151854048 151854096 -50474251 + AT_rich Low_complexity Low_complexity 1 48 0 189 0 0 0 chr4 151854459 151854480 -50473867 + (A)n Simple_repeat Simple_repeat 1 21 0 22 56 0 0 chr4 151855439 151855475 -50472872 + AT_rich Low_complexity Low_complexity 1 36 0 264 303 45 77 chr4 151855855 151856010 -50472337 + MIR SINE MIR 8 157 -105 2018 150 129 5 chr4 151856688 151857069 -50471278 - MSTA LTR MaLR 0 428 1 495 265 103 35 chr4 151857342 151857642 -50470705 + MLT1J LTR MaLR 1 282 -164 546 264 120 0 chr4 151857815 151857982 -50470365 + MER5A DNA MER1_type 1 187 -2 200 182 0 18 chr4 151858341 151858396 -50469951 + GA-rich Low_complexity Low_complexity 2 55 0 2447 68 3 0 chr4 151858479 151858775 -50469572 - AluY SINE Alu -14 297 1 1885 113 53 7 chr4 151859233 151859516 -50468831 + AluSx SINE Alu 1 296 -16 241 366 54 13 chr4 151860295 151860519 -50467828 - L2 LINE L2 -209 3063 2831 312 252 82 82 chr4 151861376 151861523 -50466824 + L1M3 LINE L1 5412 5558 -2250 282 261 54 0 chr4 151861580 151861672 -50466675 + L1M3 LINE L1 5667 5763 -417 1414 229 101 20 chr4 151862188 151863294 -50465053 + L1MC4 LINE L1 6678 7918 -124 195 42 0 0 chr4 151863333 151863357 -50464990 + (GA)n Simple_repeat Simple_repeat 1 24 0 993 274 0 0 chr4 151863801 151864024 -50464323 + MER58A DNA MER1_type 2 224 0 477 280 91 16 chr4 151864565 151864775 -50463572 + HERV16 LTR ERVL 1762 1956 -3040 600 244 182 27 chr4 151864857 151865115 -50463232 + LTR33 LTR ERVL 167 464 -57 423 256 93 74 chr4 151865250 151865574 -50462773 - MLT1H LTR MaLR -206 343 14 262 151 19 19 chr4 151865584 151865637 -50462710 + LTR33 LTR ERVL 463 515 -6 3799 25 0 0 chr4 151867257 151867699 -50460648 - L1PA3 LINE L1 -1829 4317 3876 8926 29 0 0 chr4 151867699 151869537 -50458810 + L1PA3 LINE L1 4314 6152 -3 22 35 0 0 chr4 151870424 151870453 -50457894 + AT_rich Low_complexity Low_complexity 1 29 0 244 296 29 89 chr4 151871230 151871510 -50456837 - L2 LINE L2 -1047 2267 2005 617 290 152 0 chr4 151871818 151872042 -50456305 + MIR SINE MIR 5 262 0 246 258 15 15 chr4 151873708 151873774 -50454573 - L2 LINE L2 -1 3271 3206 261 349 12 59 chr4 151874345 151874514 -50453833 + MIR3 SINE MIR 47 207 -1 181 227 23 0 chr4 151875444 151875488 -50452859 - MIR3 SINE MIR -9 199 155 208 201 38 113 chr4 151875714 151875827 -50452520 + MER5A DNA MER1_type 3 118 -71 2906 165 28 8 chr4 151875827 151876337 -50452010 + MLT2B1 LTR ERVL 1 520 0 208 201 38 113 chr4 151876337 151876357 -50451990 + MER5A DNA MER1_type 118 138 -51 473 239 39 70 chr4 151877024 151877254 -50451093 - L2 LINE L2 -9 3304 3082 30 27 0 0 chr4 151878204 151878241 -50450106 + AT_rich Low_complexity Low_complexity 1 37 0 2215 103 0 10 chr4 151879763 151880087 -50448260 + AluSx SINE Alu 1 312 0 298 273 41 25 chr4 151880178 151880299 -50448048 + MER103 DNA DNA 4 126 -40 2205 117 0 0 chr4 151880712 151881002 -50447345 - AluSx SINE Alu -18 294 5 914 93 12 31 chr4 151881410 151881571 -50446776 + L1MA4 LINE L1 6143 6300 0 804 249 58 19 chr4 151881811 151882016 -50446331 + MER58A DNA MER1_type 2 214 -10 1349 327 36 28 chr4 151882026 151882607 -50445740 + L1PA13 LINE L1 789 1374 -6200 419 296 14 14 chr4 151882643 151882785 -50445562 + L1PA13 LINE L1 2157 2298 -5276 7242 236 39 23 chr4 151883449 151884256 -50444091 + L1PA13 LINE L1 2185 2978 -4606 186 43 0 0 chr4 151884256 151884279 -50444068 + (GA)n Simple_repeat Simple_repeat 1 23 0 7242 236 39 23 chr4 151884279 151884809 -50443538 + L1PA13 LINE L1 2978 3498 -4086 2138 129 0 3 chr4 151884809 151885112 -50443235 + AluSx SINE Alu 3 304 -8 7242 236 39 23 chr4 151885112 151886715 -50441632 + L1PA13 LINE L1 3498 5135 -2449 351 0 0 0 chr4 151886715 151886754 -50441593 + (CA)n Simple_repeat Simple_repeat 2 40 0 7242 236 39 23 chr4 151886754 151886948 -50441399 + L1PA13 LINE L1 5135 5324 -2260 755 286 112 28 chr4 151887210 151887819 -50440528 + L1ME3A LINE L1 4416 5075 -1071 1165 219 143 96 chr4 151887834 151888437 -50439910 + MLT1E1 LTR MaLR 24 654 0 2272 276 33 18 chr4 151888438 151889524 -50438823 + L1ME3A LINE L1 5067 6162 -8 294 306 0 0 chr4 151889602 151889700 -50438647 + L1M4 LINE L1 4767 4864 -1282 1910 257 19 33 chr4 151890096 151890578 -50437769 - MLT1H1 LTR MaLR -15 540 66 248 105 0 0 chr4 151890909 151890947 -50437400 + L1ME3A LINE L1 6125 6162 -8 621 69 0 0 chr4 151891060 151891147 -50437200 + (TATATG)n Simple_repeat Simple_repeat 3 89 0 3032 103 114 160 chr4 151891390 151892391 -50435956 + LTR12 LTR ERV1 5 714 0 1533 231 33 33 chr4 151892489 151892943 -50435404 + L1ME2 LINE L1 5679 6132 -32 1619 203 0 17 chr4 151892969 151893270 -50435077 + AluJb SINE Alu 1 296 -16 235 266 25 0 chr4 151893320 151893399 -50434948 + L1MC4 LINE L1 7829 7909 -133 25 31 0 0 chr4 151893525 151893557 -50434790 + AT_rich Low_complexity Low_complexity 1 32 0 201 264 57 0 chr4 151894707 151894760 -50433587 + L3b LINE CR1 1281 1336 -247 255 343 96 0 chr4 151894797 151894943 -50433404 + L2 LINE L2 1922 2081 -1233 205 353 52 0 chr4 151895420 151895536 -50432811 + L2 LINE L2 3168 3289 -24 283 292 18 18 chr4 151895536 151895649 -50432698 + GA-rich Low_complexity Low_complexity 4 116 0 21 57 0 0 chr4 151896813 151896848 -50431499 + AT_rich Low_complexity Low_complexity 1 35 0 704 282 52 5 chr4 151897948 151898161 -50430186 + MIR SINE MIR 23 245 -17 616 293 43 73 chr4 151898721 151899144 -50429203 + MLT1J LTR MaLR 1 410 -101 205 301 43 11 chr4 151899737 151899830 -50428517 - MIR SINE MIR 0 262 167 30 27 0 0 chr4 151900386 151900423 -50427924 + AT_rich Low_complexity Low_complexity 1 37 0 2490 75 0 3 chr4 151900427 151900734 -50427613 + AluY SINE Alu 1 306 -5 238 359 53 20 chr4 151901141 151901386 -50426961 - L2 LINE L2 -1588 1726 1474 704 191 125 0 chr4 151901860 151902028 -50426319 + MLT1C LTR MaLR 6 194 -273 2542 82 38 0 chr4 151902105 151902447 -50425900 - THE1A LTR MaLR 0 355 1 11643 84 17 0 chr4 151902447 151904001 -50424346 - THE1A-int LTR MaLR 0 1580 1 896 109 44 0 chr4 151904001 151904138 -50424209 - THE1A LTR MaLR 0 355 213 810 218 6 6 chr4 151904108 151904273 -50424074 + MLT1C LTR MaLR 303 467 0 * 561 220 43 27 chr4 151905576 151905762 -50422585 - MER4A LTR ERV1 0 465 277 2109 99 11 60 chr4 151905774 151906245 -50422102 - MER4A LTR ERV1 -233 431 23 3048 264 198 52 chr4 151906245 151907291 -50421056 + L2 LINE L2 969 2313 -1001 2382 74 0 43 chr4 151907291 151907616 -50420731 + AluY SINE Alu 1 311 0 3048 264 198 52 chr4 151907616 151908101 -50420246 + L2 LINE L2 2313 2725 -589 1203 282 60 32 chr4 151908129 151908593 -50419754 - LTR40a LTR ERVL -42 477 1 814 312 65 16 chr4 151908594 151909057 -50419290 + L2 LINE L2 2722 3215 -98 188 242 0 0 chr4 151909050 151909083 -50419264 + MIR SINE MIR 203 235 -27 * 201 195 0 0 chr4 151909089 151909130 -50419217 + GA-rich Low_complexity Low_complexity 4 44 0 22 35 0 0 chr4 151909777 151909806 -50418541 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 151909963 151909991 -50418356 + AT_rich Low_complexity Low_complexity 1 28 0 2269 117 3 0 chr4 151911859 151912166 -50416181 - AluSp SINE Alu -5 308 1 4396 143 28 18 chr4 151912298 151913429 -50414918 + L1MA1 LINE L1 4814 5944 -358 206 261 239 0 chr4 151913728 151913816 -50414531 + L3 LINE CR1 1468 1576 -1 2012 232 44 4 chr4 151914220 151914724 -50413623 - L1M4 LINE L1 -5309 1233 710 3575 218 34 16 chr4 151914824 151915380 -50412967 - L1M4c LINE L1 -2875 4690 4105 2357 103 0 3 chr4 151915380 151915691 -50412656 + AluSx SINE Alu 1 310 -2 3575 218 34 16 chr4 151915691 151916150 -50412197 - L1M4c LINE L1 -3460 4105 3656 333 283 33 0 chr4 151916151 151916304 -50412043 - L1M4c LINE L1 -4759 2806 2617 1044 145 16 100 chr4 151916438 151916687 -50411660 + MST-int LTR MaLR 1 228 -1423 3736 276 36 46 chr4 151916689 151918521 -50409826 - L1MC/D LINE L1 -747 5399 3686 210 37 0 0 chr4 151918521 151918548 -50409799 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3736 276 36 46 chr4 151918548 151918634 -50409713 - L1MC/D LINE L1 -2460 3686 3601 1265 299 50 17 chr4 151918628 151919230 -50409117 - L1 LINE L1 -4228 3337 2716 * 1757 149 149 9 chr4 151919230 151919559 -50408788 - MSTA LTR MaLR 0 428 54 566 138 0 0 chr4 151919559 151919639 -50408708 - AluS SINE Alu -232 80 1 881 204 33 22 chr4 151919649 151919924 -50408423 - L1 LINE L1 -4649 2847 2570 429 329 6 0 chr4 151920415 151920573 -50407774 + L1MEc LINE L1 46 204 -6192 509 361 70 58 chr4 151920620 151921277 -50407070 + L1MEc LINE L1 267 931 -5465 12285 33 0 2 chr4 151921484 151923383 -50404964 + L1P2 LINE L1 3915 5810 -345 9139 171 22 16 chr4 151923666 151924655 -50403692 + L1P5 LINE L1 3395 4377 -1779 189 0 0 0 chr4 151924655 151924676 -50403671 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 9139 171 22 16 chr4 151924676 151925972 -50402375 + L1P5 LINE L1 4377 5688 -468 1766 183 22 24 chr4 151926593 151926964 -50401383 - MLT1A2 LTR MaLR -4 370 1 498 316 0 7 chr4 151927011 151927150 -50401197 - L1PA13 LINE L1 -6563 224 87 300 200 0 0 chr4 151927150 151927200 -50401147 - LTR47B LTR ERVL -118 325 276 223 226 19 0 chr4 151927314 151927367 -50400980 + (TA)n Simple_repeat Simple_repeat 2 55 0 21 71 0 0 chr4 151929377 151929419 -50398928 + AT_rich Low_complexity Low_complexity 1 42 0 1316 111 6 0 chr4 151929835 151930015 -50398332 + AluSp SINE Alu 118 298 -15 2443 142 35 67 chr4 151930015 151930508 -50397839 + L1PB4 LINE L1 5675 6151 -5 2016 141 0 7 chr4 151931117 151931416 -50396931 - AluSx SINE Alu -15 297 1 378 43 0 0 chr4 151932032 151932079 -50396268 - MADE1 DNA Mariner -32 48 2 1692 103 0 0 chr4 151932431 151932655 -50395692 + AluSg/x SINE Alu 79 302 -8 186 43 0 0 chr4 151935250 151935273 -50393074 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2402 75 0 0 chr4 151935281 151935576 -50392771 + AluY SINE Alu 1 295 -16 23 0 0 0 chr4 151935721 151935744 -50392603 + AT_rich Low_complexity Low_complexity 1 23 0 386 291 7 20 chr4 151935930 151936078 -50392269 + CT-rich Low_complexity Low_complexity 2 147 0 1676 192 10 0 chr4 151936115 151936423 -50391924 + AluJb SINE Alu 1 311 -1 300 356 17 6 chr4 151937167 151937341 -50391006 - L1MC4a LINE L1 -1891 5917 5742 452 279 108 20 chr4 151937494 151937698 -50390649 - MLT1J2 LTR MaLR -228 222 1 298 275 0 22 chr4 151938066 151938157 -50390190 + MIR SINE MIR 53 141 -121 689 139 0 9 chr4 151938202 151938317 -50390030 + AluSq SINE Alu 83 196 -117 195 42 0 0 chr4 151938531 151938555 -50389792 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1543 205 0 21 chr4 151938558 151938846 -50389501 - AluJo SINE Alu -30 282 1 231 287 23 0 chr4 151939242 151939329 -50389018 + HAL1 LINE L1 1482 1570 -937 603 274 97 101 chr4 151939331 151940105 -50388242 + HAL1 LINE L1 1650 2420 -87 207 0 0 0 chr4 151940216 151940239 -50388108 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2358 15 0 0 chr4 151940242 151940512 -50387835 - L1PA2 LINE L1 -11 6144 5875 802 233 0 0 chr4 151940857 151941003 -50387344 + FRAM SINE Alu 1 146 -30 3502 186 41 72 chr4 151941439 151941579 -50386768 + L1MC3 LINE L1 5951 6094 -1691 1962 123 58 0 chr4 151941579 151941871 -50386476 + AluSx SINE Alu 1 309 -3 261 0 0 0 chr4 151941871 151941900 -50386447 + (TA)n Simple_repeat Simple_repeat 1 29 0 3502 186 41 72 chr4 151941900 151942668 -50385679 + L1MC3 LINE L1 6092 6831 -954 22 70 0 0 chr4 151942694 151942737 -50385610 + AT_rich Low_complexity Low_complexity 1 43 0 949 316 68 19 chr4 151945468 151945892 -50382455 + L1M3c LINE L1 897 1341 -5696 682 216 23 18 chr4 151946538 151946709 -50381638 + L1M3c LINE L1 1849 2020 -5010 1673 196 40 3 chr4 151946823 151947150 -50381197 - MSTB LTR MaLR -87 339 1 1794 222 37 16 chr4 151947151 151947583 -50380764 + L1MD2 LINE L1 5633 6073 -286 231 88 0 0 chr4 151947591 151947625 -50380722 + (TGG)n Simple_repeat Simple_repeat 2 35 0 435 203 11 0 chr4 151947625 151947722 -50380625 - L1MC/D LINE L1 -576 5783 5686 13704 200 27 20 chr4 151948179 151949004 -50379343 - L1MA5 LINE L1 -2 7319 6502 9021 111 10 2 chr4 151949004 151950277 -50378070 - HSMAR1 DNA Mariner 0 1287 4 13704 200 27 20 chr4 151950277 151952033 -50376314 - L1MA5 LINE L1 -819 6502 4760 180 0 0 0 chr4 151952033 151952053 -50376294 + (TTG)n Simple_repeat Simple_repeat 2 21 0 13704 200 27 20 chr4 151952053 151952364 -50375983 - L1MA5 LINE L1 -2561 4760 4453 2206 137 27 19 chr4 151952364 151952736 -50375611 - THE1C LTR MaLR 0 375 1 13704 200 27 20 chr4 151952736 151953426 -50374921 - L1MA5 LINE L1 -2868 4453 3770 1874 144 3 45 chr4 151953426 151953571 -50374776 + AluJo SINE Alu 1 128 -184 2195 115 0 0 chr4 151953571 151953867 -50374480 + AluSg1 SINE Alu 1 296 -13 1874 144 3 45 chr4 151953867 151954033 -50374314 + AluJo SINE Alu 128 299 -13 13704 200 27 20 chr4 151954033 151956261 -50372086 - L1MA5 LINE L1 -3551 3770 1454 450 232 35 154 chr4 151956453 151956824 -50371523 - L1MA5 LINE L1 -6254 914 588 1224 210 71 18 chr4 151957303 151957584 -50370763 + AluJo SINE Alu 1 296 -16 391 299 65 11 chr4 151958769 151958953 -50369394 + MER117 DNA MER1_type 1 194 -3 579 258 120 76 chr4 151959526 151959801 -50368546 + MLT1K LTR MaLR 88 374 -214 1204 143 31 5 chr4 151959801 151960024 -50368323 + L1MB4 LINE L1 5949 6177 -3 7106 192 42 19 chr4 151960051 151961478 -50366869 + L1 LINE L1 12 1828 -5737 440 122 54 0 chr4 151961478 151961552 -50366795 - MADE1 DNA Mariner -2 78 1 7106 192 42 19 chr4 151961552 151961829 -50366518 + L1 LINE L1 1828 2097 -5468 516 348 63 13 chr4 151961835 151962229 -50366118 + L1PA12 LINE L1 1 414 -7167 1951 250 32 26 chr4 151963174 151963797 -50364550 + L1PA12 LINE L1 2324 2950 -4631 1693 121 0 12 chr4 151963797 151964046 -50364301 - AluSc SINE Alu -4 305 60 1522 82 0 5 chr4 151964046 151964248 -50364099 + L1PB1 LINE L1 5785 5985 -166 1652 110 30 34 chr4 151964248 151964512 -50363835 + THE1B LTR MaLR 1 263 -101 3708 278 29 24 chr4 151964634 151966052 -50362295 + L1PA12 LINE L1 3432 4856 -2728 879 219 51 8 chr4 151966030 151966267 -50362080 + L1 LINE L1 5140 5386 -2198 * 1911 125 0 7 chr4 151966255 151966559 -50361788 - L1M1 LINE L1 -4650 2915 2614 480 145 0 0 chr4 151966557 151966633 -50361714 + L1PA12 LINE L1 5439 5514 -2070 * 10163 148 42 13 chr4 151966627 151969489 -50358858 + L1MA3 LINE L1 3374 6304 -1 375 249 180 2 chr4 151969512 151969640 -50358707 - MIR SINE MIR -59 203 55 22 70 0 0 chr4 151969702 151969745 -50358602 + AT_rich Low_complexity Low_complexity 1 43 0 332 319 12 12 chr4 151969852 151970015 -50358332 + MLT1K LTR MaLR 424 586 -2 2403 160 21 19 chr4 151970245 151970669 -50357678 - MSTB LTR MaLR -1 425 1 207 0 0 0 chr4 151971438 151971461 -50356886 + (CAA)n Simple_repeat Simple_repeat 2 24 0 242 317 67 42 chr4 151972223 151972343 -50356004 + MIR3 SINE MIR 71 193 -15 1512 205 17 0 chr4 151973037 151973334 -50355013 + AluSx SINE Alu 10 311 -1 21 0 0 0 chr4 151973355 151973376 -50354971 + AT_rich Low_complexity Low_complexity 1 21 0 898 276 62 49 chr4 151976876 151977344 -50351003 - MLT1J LTR MaLR 0 511 38 27 0 0 0 chr4 151977410 151977437 -50350910 + AT_rich Low_complexity Low_complexity 1 27 0 421 299 73 18 chr4 151977812 151978072 -50350275 + L1M4 LINE L1 2178 2447 -3699 336 310 69 46 chr4 151978214 151978475 -50349872 + L1M4 LINE L1 2675 2941 -3205 537 282 129 80 chr4 151978587 151978913 -50349434 - L2 LINE L2 -2 3311 2970 21 71 0 0 chr4 151979566 151979608 -50348739 + AT_rich Low_complexity Low_complexity 1 42 0 316 211 9 149 chr4 151980487 151980715 -50347632 + L1MC5 LINE L1 6851 7046 -915 26 0 0 0 chr4 151980804 151980830 -50347517 + AT_rich Low_complexity Low_complexity 1 26 0 613 296 64 73 chr4 151980839 151981411 -50346936 + L1M3d LINE L1 1 455 -5436 234 0 0 0 chr4 151981411 151981437 -50346910 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 613 296 64 73 chr4 151981437 151981497 -50346850 + L1M3d LINE L1 455 514 -5377 1717 239 4 11 chr4 151981662 151982114 -50346233 + L1M3d LINE L1 692 1140 -4751 432 95 0 0 chr4 151982118 151982181 -50346166 + L1 LINE L1 5195 5257 -889 4098 272 95 12 chr4 151982181 151983246 -50345101 - L1 LINE L1 -1904 4478 3502 3991 77 11 2 chr4 151983246 151983791 -50344556 - L1PA14 LINE L1 -2 6159 5610 4098 272 95 12 chr4 151983791 151986178 -50342169 - L1 LINE L1 -2880 3502 800 464 346 42 32 chr4 151986325 151986760 -50341587 - L1M3de LINE L1 -5214 677 201 1318 159 44 12 chr4 151986774 151987026 -50341321 - MSTA LTR MaLR 0 428 169 27898 48 0 5 chr4 151987026 151990654 -50337693 + L1P LINE L1 3 3612 -2534 273 214 160 8 chr4 152090662 152090793 -50237554 + L1ME3A LINE L1 4617 4767 -1379 1713 246 95 83 chr4 152090804 152090854 -50237493 + L1ME3A LINE L1 4823 4871 -1299 428 238 89 0 chr4 152090854 152090955 -50237392 + MER81 DNA DNA 5 114 0 1713 246 95 83 chr4 152090955 152091276 -50237071 + L1ME3A LINE L1 4871 5187 -983 888 135 0 16 chr4 152091276 152091402 -50236945 + FLAM_C SINE Alu 1 124 -9 1713 246 95 83 chr4 152091402 152092109 -50236238 + L1ME3A LINE L1 5187 5905 -265 2298 103 3 0 chr4 152092109 152092410 -50235937 + AluSg SINE Alu 1 302 -8 1713 246 95 83 chr4 152092410 152092679 -50235668 + L1ME3A LINE L1 5905 6169 -1 338 274 21 0 chr4 152092865 152092960 -50235387 - MER3 DNA MER1_type -71 138 42 2046 134 0 6 chr4 152093407 152093720 -50234627 - AluY SINE Alu 0 311 1 367 293 38 64 chr4 152095071 152095228 -50233119 - L2 LINE L2 -6 3266 3114 302 289 92 0 chr4 152096259 152096397 -50231950 - MIR SINE MIR -48 214 62 22 80 0 0 chr4 152097032 152097082 -50231265 + AT_rich Low_complexity Low_complexity 1 50 0 369 0 0 0 chr4 152097348 152097389 -50230958 + (TTA)n Simple_repeat Simple_repeat 2 42 0 723 209 0 0 chr4 152097397 152097512 -50230835 - AluJb SINE Alu -196 116 2 7039 182 41 48 chr4 152097811 152098550 -50229797 - LTR49-int LTR ERV1 -220 5699 4956 1642 167 17 14 chr4 152098550 152098844 -50229503 - AluJb SINE Alu -17 295 1 1852 169 3 10 chr4 152098844 152099146 -50229201 - AluJb SINE Alu -12 300 1 7039 182 41 48 chr4 152099146 152100611 -50227736 - LTR49-int LTR ERV1 -962 4957 2577 2435 96 0 0 chr4 152100611 152100924 -50227423 + AluSp SINE Alu 1 313 0 7039 182 41 48 chr4 152100924 152101135 -50227212 - LTR49-int LTR ERV1 -3342 2577 2366 1361 83 0 0 chr4 152101135 152101304 -50227043 + AluSg1 SINE Alu 1 169 -140 1458 147 24 44 chr4 152101304 152101597 -50226750 + LOR1-int LTR ERV1 1254 1540 -6580 979 191 9 35 chr4 152101736 152101966 -50226381 + AluJb SINE Alu 89 312 0 253 167 197 15 chr4 152101966 152102032 -50226315 + Tigger1 DNA MER2_type 2173 2250 -168 298 286 86 82 chr4 152102072 152102327 -50226020 - MLT1L LTR MaLR -159 456 201 2373 103 0 0 chr4 152102791 152103102 -50225245 + AluSq SINE Alu 1 311 -2 2194 135 0 0 chr4 152103112 152103416 -50224931 + AluSx SINE Alu 1 304 -8 1093 233 27 9 chr4 152103452 152103671 -50224676 + MER58A DNA MER1_type 1 223 -1 246 125 0 0 chr4 152103928 152103976 -50224371 + (TG)n Simple_repeat Simple_repeat 2 49 0 2173 118 3 0 chr4 152104403 152104699 -50223648 + AluSq SINE Alu 3 299 -14 1496 211 144 24 chr4 152105193 152105610 -50222737 + MLT1C LTR MaLR 1 467 0 5069 146 68 24 chr4 152106182 152106856 -50221491 - MER4D LTR ERV1 0 903 181 2068 115 10 3 chr4 152106856 152107160 -50221187 - AluSx SINE Alu -4 308 3 5069 146 68 24 chr4 152107160 152107350 -50220997 - MER4D LTR ERV1 -722 181 1 762 62 10 0 chr4 152107419 152107515 -50220832 + HY3 scRNA scRNA 3 99 -2 276 154 0 0 chr4 152107515 152107567 -50220780 + A-rich Low_complexity Low_complexity 1 52 0 525 268 70 61 chr4 152107711 152107924 -50220423 + MIR SINE MIR 11 225 -37 859 227 102 100 chr4 152108007 152108115 -50220232 - MLT1J LTR MaLR -1 510 404 555 250 80 0 chr4 152108115 152108227 -50220120 + FLAM_A SINE Alu 1 121 -12 859 227 102 100 chr4 152108227 152108528 -50219819 - MLT1J LTR MaLR -107 404 100 1761 156 0 36 chr4 152108541 152108849 -50219498 + AluJb SINE Alu 1 297 -15 560 244 73 12 chr4 152109370 152109534 -50218813 - MIR SINE MIR -54 208 35 228 275 14 0 chr4 152109839 152109908 -50218439 - MER103 DNA DNA -1 165 96 197 333 121 18 chr4 152110077 152110242 -50218105 + L2 LINE L2 2545 2726 -588 241 325 41 16 chr4 152110368 152110491 -50217856 + L2 LINE L2 2916 3041 -231 1930 124 64 0 chr4 152110590 152110873 -50217474 - AluSx SINE Alu -11 301 1 2108 110 0 0 chr4 152110885 152111167 -50217180 - AluSx SINE Alu -30 282 1 23 0 0 0 chr4 152111196 152111219 -50217128 + AT_rich Low_complexity Low_complexity 1 23 0 1070 156 11 16 chr4 152111380 152111566 -50216781 - AluJb SINE Alu -127 185 1 1105 158 0 24 chr4 152111594 152111759 -50216588 - FRAM SINE Alu -5 161 1 365 191 29 0 chr4 152111765 152111833 -50216514 + MER46C DNA MER2_type 269 338 0 261 83 0 0 chr4 152111984 152112020 -50216327 + (A)n Simple_repeat Simple_repeat 1 36 0 2395 100 0 3 chr4 152113053 152113362 -50214985 - AluSx SINE Alu -4 308 1 1613 170 3 42 chr4 152113738 152114049 -50214298 + AluJb SINE Alu 1 299 -13 204 222 22 0 chr4 152114212 152114257 -50214090 + MER91C DNA MER1_type 31 76 -64 314 346 103 17 chr4 152114284 152114518 -50213829 - MIR SINE MIR -2 260 7 5428 42 0 5 chr4 152114750 152115369 -50212978 - L1PA6 LINE L1 -3 6151 5536 1019 111 105 0 chr4 152116186 152116339 -50212008 - AluSg/x SINE Alu -14 298 130 2181 94 0 0 chr4 152116686 152116961 -50211386 + AluSx SINE Alu 1 275 -37 362 39 19 0 chr4 152116968 152117020 -50211327 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 295 323 38 142 chr4 152117549 152117992 -50210355 - L2 LINE L2 -5 3267 2871 1570 174 19 56 chr4 152118556 152118878 -50209469 - AluJo SINE Alu -2 310 1 2258 109 3 6 chr4 152119126 152119437 -50208910 - AluSx SINE Alu -2 310 1 739 168 109 0 chr4 152120519 152120638 -50207709 - FLAM_C SINE Alu 0 133 2 2119 113 31 0 chr4 152121232 152121524 -50206823 + AluSx SINE Alu 1 301 -11 787 232 12 18 chr4 152122145 152122313 -50206034 + MER5A DNA MER1_type 1 167 -22 313 299 114 1 chr4 152123092 152123199 -50205148 + MIR SINE MIR 38 153 -73 747 208 40 0 chr4 152123341 152123466 -50204881 - FLAM_A SINE Alu -3 130 1 354 250 77 0 chr4 152123811 152123915 -50204432 + MIR SINE MIR 71 182 -80 359 92 123 0 chr4 152124662 152124727 -50203620 - MADE1 DNA Mariner -7 73 1 340 222 175 38 chr4 152125285 152125443 -50202904 + MIR SINE MIR 50 218 -40 446 323 55 4 chr4 152125532 152125704 -50202643 - MIR SINE MIR -76 132 3 2058 126 14 0 chr4 152125904 152126198 -50202149 - AluSx SINE Alu -14 298 1 2425 97 3 0 chr4 152127185 152127496 -50200851 - AluSp SINE Alu -1 312 1 1435 112 9 69 chr4 152127544 152127776 -50200571 + MER20 DNA MER1_type 2 219 0 1319 78 6 0 chr4 152129698 152129865 -50198482 + L1PA5 LINE L1 5986 6153 -1 1698 201 56 0 chr4 152130013 152130336 -50198011 - MER58B DNA MER1_type 0 341 1 310 340 41 56 chr4 152130344 152130541 -50197806 + MIR SINE MIR 20 213 -49 22 35 0 0 chr4 152130571 152130600 -50197747 + AT_rich Low_complexity Low_complexity 1 29 0 990 112 0 8 chr4 152130659 152130793 -50197554 - FLAM_C SINE Alu 0 133 1 2470 76 0 0 chr4 152131009 152131313 -50197034 - AluSx SINE Alu -8 304 1 1291 120 52 17 chr4 152131686 152131919 -50196428 - MER96B DNA MER1_type? -2 415 175 2474 70 0 10 chr4 152132247 152132559 -50195788 - AluY SINE Alu -2 309 1 1971 131 14 0 chr4 152133644 152133927 -50194420 - AluSx SINE Alu -25 287 1 361 214 0 0 chr4 152133965 152134035 -50194312 - MER5A DNA MER1_type 0 189 120 352 306 83 13 chr4 152134243 152134400 -50193947 + MIR SINE MIR 28 195 -67 501 276 173 51 chr4 152134483 152134680 -50193667 - L1M4 LINE L1 -847 5299 5128 1805 166 0 66 chr4 152134680 152135012 -50193335 + AluJo SINE Alu 1 310 -2 501 276 173 51 chr4 152135012 152135346 -50193001 - L1M4 LINE L1 -1018 5128 4667 2294 92 3 10 chr4 152135346 152135652 -50192695 + AluSg1 SINE Alu 1 304 -5 501 276 173 51 chr4 152135652 152135788 -50192559 - L1M4 LINE L1 -1479 4667 4549 312 323 25 0 chr4 152135816 152135977 -50192370 - L1MCc LINE L1 -4928 2194 2030 2026 133 10 13 chr4 152136129 152136429 -50191918 - AluSx SINE Alu -13 299 1 758 155 12 62 chr4 152136441 152136602 -50191745 - L1MC1 LINE L1 0 6333 6181 1483 221 25 53 chr4 152136612 152136843 -50191504 - L1MCc LINE L1 -4889 1534 1419 2157 120 0 0 chr4 152136843 152137144 -50191203 - AluSx SINE Alu -11 301 1 1483 221 25 53 chr4 152137144 152137417 -50190930 - L1MCc LINE L1 -5004 1419 1140 246 318 91 18 chr4 152137439 152137549 -50190798 - L1MCc LINE L1 -5650 773 656 1786 299 25 21 chr4 152137563 152138134 -50190213 - L1MCc LINE L1 -5833 590 18 225 178 0 0 chr4 152138280 152138325 -50190022 + (CA)n Simple_repeat Simple_repeat 2 46 0 259 123 158 18 chr4 152138325 152138382 -50189965 - MLT2F LTR ERVL -58 605 541 709 258 99 11 chr4 152138399 152138720 -50189627 - MLT2F LTR ERVL -273 390 3 328 369 29 42 chr4 152138921 152139162 -50189185 - L1MEd LINE L1 -5547 572 335 23 0 0 0 chr4 152139433 152139456 -50188891 + AT_rich Low_complexity Low_complexity 1 23 0 2057 120 45 0 chr4 152139641 152139933 -50188414 + AluSg SINE Alu 6 310 0 21 0 0 0 chr4 152139982 152140003 -50188344 + AT_rich Low_complexity Low_complexity 1 21 0 637 275 87 57 chr4 152140125 152140354 -50187993 - MIR SINE MIR -2 260 25 949 98 0 0 chr4 152140368 152140490 -50187857 - AluSg SINE Alu -14 298 177 661 40 0 0 chr4 152140490 152140566 -50187781 - AluSg SINE Alu -234 77 2 1503 266 85 40 chr4 152140900 152141722 -50186625 - L1MC4 LINE L1 -315 7727 6869 626 305 196 6 chr4 152142179 152142757 -50185590 + L2 LINE L2 2616 3312 -1 2159 116 0 23 chr4 152143889 152144191 -50184156 - AluSx SINE Alu -8 304 10 830 158 7 36 chr4 152144256 152144395 -50183952 + AluJo SINE Alu 2 136 -176 190 211 42 14 chr4 152144466 152144608 -50183739 + (TA)n Simple_repeat Simple_repeat 2 147 0 2536 68 0 0 chr4 152145330 152145640 -50182707 + AluY SINE Alu 1 310 -1 26 0 0 0 chr4 152146042 152146068 -50182279 + AT_rich Low_complexity Low_complexity 1 26 0 766 142 0 0 chr4 152146078 152146184 -50182163 - FLAM_C SINE Alu -36 107 2 1971 151 57 83 chr4 152146463 152146835 -50181512 - THE1B LTR MaLR 0 364 3 12309 95 19 1 chr4 152146837 152148388 -50179959 - THE1B-int LTR MaLR 0 1580 1 2478 124 39 14 chr4 152148388 152148743 -50179604 - THE1B LTR MaLR 0 364 1 1507 181 20 24 chr4 152149368 152149790 -50178557 - L1MC/D LINE L1 -743 5663 5309 282 228 0 0 chr4 152149784 152149855 -50178492 - L1MEc LINE L1 -4913 1537 1435 * 887 137 0 0 chr4 152149913 152150037 -50178310 + FLAM_C SINE Alu 13 136 -7 4208 208 120 48 chr4 152150071 152151265 -50177082 - L1MEc LINE L1 -5128 1281 2 2074 133 14 0 chr4 152151390 152151683 -50176664 - AluSx SINE Alu -15 297 1 2260 113 0 0 chr4 152152743 152153052 -50175295 - AluY SINE Alu -2 309 1 2542 123 80 10 chr4 152154682 152155080 -50173267 - MSTA LTR MaLR 0 428 3 510 128 0 0 chr4 152155467 152155545 -50172802 - Alu SINE Alu -1 310 233 691 303 92 49 chr4 152155716 152156304 -50172043 + MLT1L LTR MaLR 1 613 -2 257 310 71 15 chr4 152156875 152157072 -50171275 + L1ME LINE L1 5616 5823 -298 1355 183 32 0 chr4 152157891 152158137 -50170210 + AluJo SINE Alu 1 254 -58 250 336 47 0 chr4 152158507 152158614 -50169733 + MER20 DNA MER1_type 87 198 -21 534 232 27 0 chr4 152158672 152158784 -50169563 + AluJb SINE Alu 118 232 -80 2100 126 10 13 chr4 152159712 152160022 -50168325 - AluSx SINE Alu -3 309 1 314 147 15 0 chr4 152160055 152160123 -50168224 + CT-rich Low_complexity Low_complexity 2 70 0 2346 95 0 0 chr4 152161339 152161635 -50166712 - AluSq SINE Alu -17 296 1 454 184 14 62 chr4 152162140 152162257 -50166090 + LTR33A LTR ERVL 437 523 0 499 218 10 10 chr4 152162714 152162815 -50165532 - L2 LINE L2 -3 3310 3210 4177 139 43 0 chr4 152165399 152166052 -50162295 + MER39 LTR ERV1 1 681 -26 1270 200 136 27 chr4 152166207 152166758 -50161589 + MER76 LTR ERV 1 687 -1 183 317 37 12 chr4 152167005 152167087 -50161260 + MIR3 SINE MIR 114 197 -11 1550 158 20 118 chr4 152167205 152167610 -50160737 + MLT1A1 LTR MaLR 1 365 0 3785 136 4 0 chr4 152167802 152168324 -50160023 - MER1A DNA MER1_type 0 527 4 1665 184 50 66 chr4 152168496 152168892 -50159455 + MLT1B LTR MaLR 1 390 0 22 35 0 0 chr4 152169120 152169149 -50159198 + AT_rich Low_complexity Low_complexity 1 29 0 3368 156 64 76 chr4 152169425 152170124 -50158223 - LTR8 LTR ERV1 0 691 1 273 204 43 43 chr4 152170184 152170277 -50158070 + HAL1 LINE L1 2245 2337 -170 473 178 0 76 chr4 152171468 152171586 -50156761 + L1ME3 LINE L1 6054 6162 0 1735 278 67 23 chr4 152171840 152172651 -50155696 + L1MC4a LINE L1 5120 5403 -743 671 89 99 10 chr4 152172662 152172763 -50155584 + MER85 DNA T2_type 1 110 -29 1645 136 51 0 chr4 152172863 152173099 -50155248 - LTR18A LTR ERVL -107 250 3 241 327 128 6 chr4 152173466 152173622 -50154725 + L2 LINE L2 3121 3295 -18 304 240 50 20 chr4 152174526 152174626 -50153721 + L1ME4a LINE L1 5732 5834 -1974 2554 169 28 12 chr4 152174632 152174772 -50153575 + MER6 DNA MER2_type 2 138 -727 4478 123 21 3 chr4 152174772 152175396 -50152951 - MER41B LTR ERV1 0 635 1 2554 169 28 12 chr4 152175396 152175680 -50152667 + MER6 DNA MER2_type 138 433 -432 2162 124 3 7 chr4 152175680 152175978 -50152369 + AluSx SINE Alu 1 297 -15 1289 210 23 10 chr4 152175980 152176318 -50152029 - LOR1-int LTR ERV1 -3684 4132 1720 914 193 0 0 chr4 152176416 152176566 -50151781 + AluSx SINE Alu 12 161 -151 1968 163 0 0 chr4 152176845 152177145 -50151202 - AluJb SINE Alu -10 302 3 22 0 0 0 chr4 152177269 152177291 -50151056 + AT_rich Low_complexity Low_complexity 1 22 0 2012 141 7 7 chr4 152177292 152177597 -50150750 - AluSq SINE Alu -8 305 1 226 297 0 16 chr4 152177893 152177957 -50150390 + L3 LINE CR1 617 679 -898 999 288 158 19 chr4 152178437 152178912 -50149435 + L3 LINE CR1 672 1212 -365 2248 111 0 3 chr4 152179579 152179886 -50148461 + AluSx SINE Alu 1 306 -6 2188 117 3 0 chr4 152179886 152180185 -50148162 + AluSg SINE Alu 1 300 -10 249 268 127 19 chr4 152180399 152180556 -50147791 + L1ME4a LINE L1 5944 6117 -4 718 267 91 9 chr4 152180681 152180902 -50147445 + L2 LINE L2 2638 2876 -438 585 244 81 78 chr4 152180919 152181227 -50147120 + L2 LINE L2 2996 3304 -9 242 342 0 0 chr4 152181308 152181387 -50146960 + L3 LINE CR1 1493 1571 -6 687 208 129 10 chr4 152182292 152182494 -50145853 - L1ME3A LINE L1 -5 6165 5940 651 171 21 21 chr4 152182552 152182692 -50145655 - L1MA10 LINE L1 -1 6333 6194 2777 193 51 41 chr4 152182693 152183091 -50145256 - L1ME1 LINE L1 -190 5976 5584 2330 97 3 0 chr4 152183091 152183389 -50144958 + AluSq SINE Alu 1 299 -14 2777 193 51 41 chr4 152183389 152183597 -50144750 - L1ME1 LINE L1 -582 5584 5380 1903 163 0 10 chr4 152183597 152183897 -50144450 - AluJo SINE Alu -15 297 1 2777 193 51 41 chr4 152183897 152183976 -50144371 - L1ME1 LINE L1 -786 5380 5303 2289 94 10 0 chr4 152183976 152184273 -50144074 - AluSp SINE Alu -13 300 1 2777 193 51 41 chr4 152184273 152184429 -50143918 - L1ME1 LINE L1 -863 5303 5133 1616 166 29 19 chr4 152184429 152184736 -50143611 - AluJo SINE Alu 0 312 3 1782 120 109 7 chr4 152184742 152185016 -50143331 - AluJo SINE Alu -9 303 2 183 80 0 0 chr4 152185028 152185053 -50143294 + (TTG)n Simple_repeat Simple_repeat 3 27 0 369 135 108 72 chr4 152185053 152185075 -50143272 - L1M4 LINE L1 -802 5344 5324 1965 138 14 7 chr4 152185075 152185371 -50142976 - AluJb SINE Alu -14 298 1 369 135 108 72 chr4 152185371 152185459 -50142888 - L1M4 LINE L1 -822 5324 5230 1441 230 2 32 chr4 152185473 152185534 -50142813 - L1M4 LINE L1 -1014 5132 5071 1648 203 96 8 chr4 152185534 152185898 -50142449 - MSTD LTR MaLR 0 396 1 1441 230 2 32 chr4 152185898 152186236 -50142111 - L1M4 LINE L1 -1075 5071 4745 2304 102 0 0 chr4 152186259 152186554 -50141793 - AluSq SINE Alu -18 295 1 1672 123 126 0 chr4 152186557 152186818 -50141529 - AluSq SINE Alu -10 303 10 851 198 30 56 chr4 152186818 152187050 -50141297 - L1M4 LINE L1 -1388 4758 4533 1537 204 25 7 chr4 152187052 152187336 -50141011 + AluJo SINE Alu 1 289 -23 195 42 0 0 chr4 152187357 152187381 -50140966 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 698 252 55 25 chr4 152187481 152187719 -50140628 + L1MEc LINE L1 780 1024 -5372 2187 134 0 3 chr4 152187723 152188029 -50140318 - AluSx SINE Alu -7 305 1 5443 64 24 41 chr4 152188371 152188802 -50139545 - MER4E LTR ERV1 0 766 352 2080 125 0 23 chr4 152188802 152189106 -50139241 - AluSg SINE Alu -13 297 1 5443 64 24 41 chr4 152189106 152189453 -50138894 - MER4E LTR ERV1 -414 352 1 1329 240 17 20 chr4 152189612 152189640 -50138707 + MLT1A1 LTR MaLR 75 102 -263 9124 107 12 6 chr4 152189640 152190917 -50137430 + HSMAR1 DNA Mariner 4 1287 0 1329 240 17 20 chr4 152190917 152191180 -50137167 + MLT1A1 LTR MaLR 102 365 0 313 135 39 0 chr4 152191197 152191249 -50137098 + MER69 DNA AcHobo 15 68 -109 582 191 73 7 chr4 152191392 152191528 -50136819 + MER69 DNA AcHobo 2382 2526 0 189 356 11 0 chr4 152191544 152191634 -50136713 - L2 LINE L2 -2070 1244 1154 1824 179 0 7 chr4 152191649 152191945 -50136402 + AluSx SINE Alu 1 294 -18 482 125 67 19 chr4 152192684 152192770 -50135577 + L1MB2 LINE L1 6061 6154 -17 203 0 37 0 chr4 152192770 152192797 -50135550 + (TTG)n Simple_repeat Simple_repeat 2 29 0 482 125 67 19 chr4 152192797 152192814 -50135533 + L1MB2 LINE L1 6154 6169 -2 188 233 107 87 chr4 152192948 152193051 -50135296 + MIR SINE MIR 22 126 -82 472 268 44 44 chr4 152195507 152195690 -50132657 + MER5A DNA MER1_type 7 189 0 752 159 172 0 chr4 152196360 152196511 -50131836 - MER20 DNA MER1_type -1 218 42 4240 130 61 19 chr4 152196554 152197307 -50131040 + LTR1 LTR ERV1 1 785 0 30 45 0 0 chr4 152197450 152197494 -50130853 + AT_rich Low_complexity Low_complexity 1 44 0 2351 92 3 0 chr4 152197523 152197828 -50130519 - AluSp SINE Alu -7 306 1 542 119 20 50 chr4 152197983 152198084 -50130263 - ORSL DNA AcHobo 0 275 178 25 51 0 0 chr4 152198983 152199022 -50129325 + AT_rich Low_complexity Low_complexity 1 39 0 350 240 0 27 chr4 152199036 152199111 -50129236 - ORSL DNA AcHobo -200 75 3 493 333 143 24 chr4 152199318 152199996 -50128351 - L2 LINE L2 -350 2964 2206 290 264 0 0 chr4 152200715 152200787 -50127560 + MIR3 SINE MIR 85 156 -52 394 147 44 0 chr4 152202241 152202309 -50126038 + FLAM SINE Alu 48 118 -15 289 236 9 75 chr4 152204719 152204825 -50123522 - L2 LINE L2 -2 3311 3213 334 272 132 0 chr4 152205062 152205176 -50123171 - MIR SINE MIR -59 149 21 2346 90 0 37 chr4 152205358 152205681 -50122666 + AluSq SINE Alu 1 311 -2 2182 145 0 0 chr4 152205691 152206001 -50122346 + AluSx SINE Alu 1 310 -2 1018 233 27 9 chr4 152206037 152206256 -50122091 + MER58A DNA MER1_type 1 223 -1 249 135 0 0 chr4 152206513 152206565 -50121782 + (TG)n Simple_repeat Simple_repeat 2 53 0 2189 118 3 0 chr4 152206992 152207288 -50121059 + AluSq SINE Alu 3 299 -14 1402 216 144 22 chr4 152207782 152208198 -50120149 + MLT1C LTR MaLR 1 467 0 1762 95 4 0 chr4 152208814 152209046 -50119301 - AluSp SINE Alu -80 233 1 473 313 101 52 chr4 152209130 152209352 -50118995 + L2 LINE L2 2804 3014 -299 2303 102 0 0 chr4 152209352 152209645 -50118702 + AluSx SINE Alu 4 296 -16 473 313 101 52 chr4 152209645 152209907 -50118440 + L2 LINE L2 3014 3312 -1 1858 165 0 3 chr4 152210586 152210889 -50117458 - AluSx SINE Alu -10 302 1 2200 119 7 0 chr4 152210900 152211210 -50117137 - AluSx SINE Alu 0 312 1 1988 98 22 4 chr4 152211228 152211568 -50116779 - AluSx SINE Alu 0 345 1 321 250 15 0 chr4 152211616 152211720 -50116627 - MIR SINE MIR -56 152 45 2577 46 7 0 chr4 152212250 152212552 -50115795 - AluSp SINE Alu -9 304 1 188 119 0 24 chr4 152213133 152213175 -50115172 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 224 254 0 45 chr4 152213258 152213325 -50115022 + G-rich Low_complexity Low_complexity 4 67 0 288 0 0 0 chr4 152213755 152213787 -50114560 + (TG)n Simple_repeat Simple_repeat 1 32 0 24 0 0 0 chr4 152213962 152213986 -50114361 + GC_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 152215325 152215347 -50113000 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr4 152215719 152215742 -50112605 + (TG)n Simple_repeat Simple_repeat 1 23 0 191 225 0 0 chr4 152216213 152216253 -50112094 + MIR3 SINE MIR 139 178 -30 2030 115 21 0 chr4 152216254 152216540 -50111807 + AluSx SINE Alu 14 305 -7 2070 111 30 14 chr4 152217512 152217809 -50110538 - AluSx SINE Alu -10 302 1 2352 79 9 38 chr4 152219552 152219870 -50108477 - AluSq SINE Alu -4 309 1 334 272 132 0 chr4 152220052 152220166 -50108181 + MIR SINE MIR 21 149 -59 289 236 9 75 chr4 152220403 152220509 -50107838 + L2 LINE L2 3213 3311 -2 394 147 44 0 chr4 152222919 152222987 -50105360 - FLAM SINE Alu -15 118 48 290 264 0 0 chr4 152224441 152224513 -50103834 - MIR3 SINE MIR -52 156 85 466 335 143 24 chr4 152225232 152225910 -50102437 + L2 LINE L2 2206 2964 -350 350 240 0 27 chr4 152226117 152226192 -50102155 + ORSL DNA AcHobo 3 75 -200 25 51 0 0 chr4 152226206 152226245 -50102102 + AT_rich Low_complexity Low_complexity 1 39 0 542 119 20 50 chr4 152227148 152227249 -50101098 + ORSL DNA AcHobo 178 275 0 2360 92 3 0 chr4 152227404 152227710 -50100637 + AluSp SINE Alu 1 307 -6 30 45 0 0 chr4 152227739 152227783 -50100564 + AT_rich Low_complexity Low_complexity 1 44 0 4240 130 61 19 chr4 152227926 152228679 -50099668 - LTR1 LTR ERV1 0 785 1 752 159 172 0 chr4 152228722 152228873 -50099474 + MER20 DNA MER1_type 42 218 -1 472 268 44 44 chr4 152229543 152229726 -50098621 - MER5A DNA MER1_type 0 189 7 196 223 107 87 chr4 152232181 152232284 -50096063 - MIR SINE MIR -82 126 22 498 112 34 22 chr4 152232456 152232545 -50095802 - L1MB2 LINE L1 -21 6150 6061 21 57 0 0 chr4 152235403 152235438 -50092909 + AT_rich Low_complexity Low_complexity 1 35 0 787 267 85 85 chr4 152238463 152238933 -50089414 - LTR67 LTR ERVL -1 556 84 905 143 0 0 chr4 152238933 152239066 -50089281 - FLAM_C SINE Alu 0 133 1 787 267 85 85 chr4 152239066 152239150 -50089197 - LTR67 LTR ERVL -472 85 2 4063 104 27 10 chr4 152239304 152239928 -50088419 - MER41B LTR ERV1 0 635 1 482 275 152 1 chr4 152239942 152240148 -50088199 - MIR SINE MIR -14 248 16 2070 113 38 0 chr4 152240924 152241216 -50087131 + AluSq SINE Alu 2 304 -9 2680 39 0 0 chr4 152241875 152242183 -50086164 - AluY SINE Alu -3 308 1 418 365 7 15 chr4 152242361 152242498 -50085849 + L2 LINE L2 3137 3272 0 203 248 47 124 chr4 152242993 152243122 -50085225 - L2 LINE L2 -1 3271 3153 245 224 0 0 chr4 152243151 152243200 -50085147 + MIR3 SINE MIR 159 207 -1 297 164 0 0 chr4 152243661 152243716 -50084631 - L1M4 LINE L1 -353 5825 5771 239 135 0 0 chr4 152243744 152243781 -50084566 - Alu SINE Alu -16 286 250 188 254 14 113 chr4 152244247 152244318 -50084029 + L2 LINE L2 3200 3263 -9 2048 137 3 7 chr4 152244726 152245032 -50083315 - AluSx SINE Alu -7 305 1 1927 124 67 14 chr4 152245813 152245958 -50082389 - AluSq SINE Alu -16 297 161 2078 128 0 3 chr4 152245958 152246247 -50082100 - AluSx SINE Alu -24 288 1 1927 124 67 14 chr4 152246247 152246383 -50081964 - AluSq SINE Alu -152 161 1 323 276 221 28 chr4 152246905 152247050 -50081297 + L3 LINE CR1 1307 1479 -98 227 299 0 13 chr4 152247061 152247138 -50081209 - LTR33 LTR ERVL 0 521 446 252 318 148 9 chr4 152247263 152247486 -50080861 - LTR33 LTR ERVL -242 279 26 7348 40 0 0 chr4 152247562 152248897 -50079450 - L1PA5 LINE L1 -3 6151 4813 819 129 0 0 chr4 152249049 152249165 -50079182 + AluSq/x SINE Alu 1 116 -196 201 284 168 0 chr4 152249183 152249278 -50079069 - L3 LINE CR1 -158 1419 1309 660 236 56 11 chr4 152249340 152249518 -50078829 - L2 LINE L2 0 3313 3128 285 338 126 30 chr4 152249522 152249753 -50078594 + L3 LINE CR1 883 1135 -442 957 321 194 15 chr4 152249756 152250051 -50078296 - L3 LINE CR1 -298 1279 1038 315 0 0 0 chr4 152250051 152250086 -50078261 + (CA)n Simple_repeat Simple_repeat 2 36 0 957 321 194 15 chr4 152250086 152250470 -50077877 - L3 LINE CR1 -539 1038 478 1670 178 0 4 chr4 152250553 152250829 -50077518 + AluJb SINE Alu 1 275 -37 306 0 0 0 chr4 152250829 152250863 -50077484 + (TC)n Simple_repeat Simple_repeat 2 35 0 34 0 0 0 chr4 152250864 152250898 -50077449 + AT_rich Low_complexity Low_complexity 1 34 0 1836 134 4 4 chr4 152251977 152252254 -50076093 - AluSx SINE Alu -35 277 1 1095 138 13 74 chr4 152252740 152252971 -50075376 - MER20 DNA MER1_type -2 217 1 184 240 100 0 chr4 152253038 152253088 -50075259 - L3 LINE CR1 -23 1554 1500 396 0 0 0 chr4 152255636 152255680 -50072667 + (TC)n Simple_repeat Simple_repeat 1 44 0 1730 152 29 4 chr4 152256614 152256891 -50071456 - AluJb SINE Alu -28 284 1 196 270 0 0 chr4 152256946 152256983 -50071364 - L2 LINE L2 -87 3185 3149 250 313 15 76 chr4 152257022 152257153 -50071194 + MIR SINE MIR 30 152 -56 198 296 155 0 chr4 152257156 152257227 -50071120 + MIR3 SINE MIR 115 196 -12 753 169 23 0 chr4 152257597 152257727 -50070620 - FLAM_C SINE Alu 0 133 1 298 307 93 27 chr4 152258105 152258255 -50070092 + MIR SINE MIR 12 171 -91 526 271 126 0 chr4 152258450 152258649 -50069698 + MIR SINE MIR 12 235 -27 522 250 68 38 chr4 152260471 152260763 -50067584 - L1ME4a LINE L1 -31 6090 5790 1809 168 10 3 chr4 152260804 152261096 -50067251 + AluJo SINE Alu 6 299 -13 23 0 0 0 chr4 152261285 152261308 -50067039 + AT_rich Low_complexity Low_complexity 1 23 0 299 267 133 0 chr4 152262073 152262188 -50066159 + MIR SINE MIR 33 160 -67 416 255 131 50 chr4 152262429 152262728 -50065619 - MLT1J LTR MaLR -41 470 109 1675 172 0 7 chr4 152262864 152263137 -50065210 + AluJb SINE Alu 1 271 -41 271 272 74 0 chr4 152263148 152263229 -50065118 + MER58B DNA MER1_type 174 260 -81 * 1513 151 46 63 chr4 152263227 152263399 -50064948 - MER46B DNA MER2_type -2511 220 181 1768 203 0 3 chr4 152263399 152263694 -50064653 - AluJo SINE Alu -18 294 1 1513 151 46 63 chr4 152263694 152263872 -50064475 - MER46B DNA MER2_type -2550 181 1 438 136 0 0 chr4 152263872 152263937 -50064410 + MER58B DNA MER1_type 259 323 -18 2260 122 3 0 chr4 152264125 152264436 -50063911 - AluSp SINE Alu 0 313 2 2201 108 0 0 chr4 152265424 152265721 -50062626 - AluSx SINE Alu -15 297 1 359 294 0 0 chr4 152266691 152266776 -50061571 + L2 LINE L2 3229 3313 0 421 250 107 50 chr4 152267527 152267652 -50060695 + MIR SINE MIR 103 238 -24 700 255 87 57 chr4 152267652 152268146 -50060201 - MLT1J LTR MaLR -2 509 1 421 250 107 50 chr4 152268146 152268160 -50060187 + MIR SINE MIR 238 250 -12 558 182 34 47 chr4 152270199 152270347 -50058000 + MER58C DNA MER1_type 70 215 0 973 198 63 28 chr4 152270357 152270610 -50057737 + MIR SINE MIR 1 262 0 2170 102 0 16 chr4 152270998 152271302 -50057045 + AluY SINE Alu 1 299 -12 445 229 71 36 chr4 152272216 152272356 -50055991 + L2 LINE L2 3169 3313 0 346 167 0 79 chr4 152273333 152273447 -50054900 + HAL1b LINE L1 751 855 -493 311 221 77 111 chr4 152274101 152274282 -50054065 - L2 LINE L2 -15 3298 3124 867 168 0 0 chr4 152275784 152275915 -50052432 + FLAM_C SINE Alu 1 131 -2 2036 133 3 13 chr4 152276947 152277249 -50051098 - AluSx SINE Alu -13 299 1 182 317 17 17 chr4 152277249 152277309 -50051038 - L2 LINE L2 -25 3288 3229 22 0 0 0 chr4 152277565 152277587 -50050760 + AT_rich Low_complexity Low_complexity 1 22 0 2268 117 0 3 chr4 152277692 152277991 -50050356 + AluSx SINE Alu 1 298 -14 23 54 0 0 chr4 152278049 152278086 -50050261 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 152278880 152278901 -50049446 + AT_rich Low_complexity Low_complexity 1 21 0 1076 182 5 19 chr4 152281558 152281772 -50046575 + AluJo SINE Alu 85 295 -17 827 168 135 5 chr4 152281775 152281960 -50046387 - MER3 DNA MER1_type 0 209 1 500 239 9 0 chr4 152283064 152283173 -50045174 + MER81 DNA DNA 5 114 0 404 276 6 35 chr4 152283173 152283343 -50045004 - L1ME LINE L1 -362 5759 5595 21 57 0 0 chr4 152285272 152285307 -50043040 + AT_rich Low_complexity Low_complexity 1 35 0 429 269 59 21 chr4 152285497 152285683 -50042664 - L1MC4a LINE L1 -1880 5928 5736 271 292 97 62 chr4 152286112 152286256 -50042091 - L2 LINE L2 -181 3091 2943 207 0 0 0 chr4 152286868 152286891 -50041456 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 399 267 11 61 chr4 152286937 152287117 -50041230 + MER5B DNA MER1_type 4 174 -4 195 250 0 0 chr4 152287840 152287884 -50040463 - L2 LINE L2 -8 3264 3221 389 362 77 61 chr4 152289477 152289803 -50038544 - L2 LINE L2 -33 3239 2909 2172 88 30 3 chr4 152290831 152291127 -50037220 - AluSx SINE Alu -6 306 3 1659 126 23 63 chr4 152291788 152292136 -50036211 - L1MB3 LINE L1 -1 6182 5849 259 159 0 0 chr4 152292136 152292180 -50036167 - L1MB3 LINE L1 -1201 4945 4902 2382 61 0 10 chr4 152293130 152293423 -50034924 + AluY SINE Alu 1 290 -21 23 33 0 0 chr4 152293459 152293489 -50034858 + AT_rich Low_complexity Low_complexity 1 30 0 2022 134 0 10 chr4 152293495 152293786 -50034561 + AluSx SINE Alu 1 288 -24 1038 31 78 0 chr4 152293801 152293930 -50034417 - MER85 DNA T2_type 0 139 1 2079 136 3 3 chr4 152294419 152294714 -50033633 - AluSx SINE Alu -17 295 1 184 197 15 15 chr4 152296184 152296250 -50032097 + (TA)n Simple_repeat Simple_repeat 1 66 0 203 289 0 77 chr4 152296277 152296329 -50032018 - L2 LINE L2 -88 3184 3137 2351 218 83 45 chr4 152297916 152298647 -50029700 - L1ME3 LINE L1 -1 6161 5403 351 113 0 0 chr4 152298667 152298720 -50029627 + (T)n Simple_repeat Simple_repeat 1 53 0 266 242 3 68 chr4 152298721 152298824 -50029523 - MER5B DNA MER1_type -56 133 29 1206 93 0 12 chr4 152300422 152300584 -50027763 + AluY SINE Alu 1 160 -151 1793 42 5 5 chr4 152300584 152300796 -50027551 + AluY SINE Alu 84 295 -16 405 0 0 0 chr4 152300799 152300844 -50027503 + (TA)n Simple_repeat Simple_repeat 1 45 0 21 0 0 0 chr4 152300866 152300887 -50027460 + AT_rich Low_complexity Low_complexity 1 21 0 2217 105 10 0 chr4 152301684 152301978 -50026369 + AluSc SINE Alu 1 297 -12 245 35 0 0 chr4 152302065 152302094 -50026253 - LTR6A LTR ERV1 -463 101 73 30 45 0 0 chr4 152302987 152303031 -50025316 + AT_rich Low_complexity Low_complexity 1 44 0 1731 145 32 3 chr4 152303294 152303576 -50024771 + AluJo SINE Alu 21 310 -2 180 265 0 20 chr4 152303613 152303662 -50024685 - L2 LINE L2 -15 3257 3210 1390 136 8 17 chr4 152303957 152304192 -50024155 - MER61C LTR ERV1 0 434 202 21017 103 33 16 chr4 152304204 152305779 -50022568 - MER61C-int LTR ERV1 -1 5216 3669 1866 59 4 0 chr4 152305779 152306016 -50022331 + L1PA5 LINE L1 5917 6154 0 21017 103 33 16 chr4 152306016 152306104 -50022243 - MER61C-int LTR ERV1 -1548 3669 3584 2154 134 0 3 chr4 152306104 152306410 -50021937 - AluSx SINE Alu -7 305 1 21017 103 33 16 chr4 152306410 152308580 -50019767 - MER61C-int LTR ERV1 -1633 3584 958 2512 122 23 28 chr4 152308580 152309016 -50019331 - MER61C-int LTR ERV1 -4377 840 407 390 81 244 23 chr4 152309027 152309113 -50019234 - MER61C-int LTR ERV1 -4763 454 350 924 171 75 45 chr4 152309163 152309362 -50018985 - MER61C-int LTR ERV1 -5012 205 1 1005 156 103 45 chr4 152309362 152309586 -50018761 - MER61C LTR ERV1 0 434 198 381 230 35 95 chr4 152310393 152310478 -50017869 + L1ME LINE L1 5482 5571 -550 2251 103 3 0 chr4 152310478 152310769 -50017578 - AluSq SINE Alu -21 292 1 381 230 35 95 chr4 152310769 152310883 -50017464 + L1ME LINE L1 5571 5669 -452 24 32 0 0 chr4 152310958 152310989 -50017358 + AT_rich Low_complexity Low_complexity 1 31 0 667 272 80 4 chr4 152311264 152311540 -50016807 + L1ME3A LINE L1 3274 3570 -2576 848 234 69 32 chr4 152311604 152311951 -50016396 + L1ME3A LINE L1 3864 4239 -1907 1347 265 136 32 chr4 152311953 152312908 -50015439 + L1ME3A LINE L1 4275 5328 -818 1867 229 52 103 chr4 152312917 152313711 -50014636 + L1ME3A LINE L1 5418 6170 0 228 210 0 16 chr4 152313747 152313809 -50014538 + L1MC5 LINE L1 7359 7419 -542 717 171 0 0 chr4 152314175 152314286 -50014061 + FLAM_A SINE Alu 12 122 -20 189 210 0 0 chr4 152314462 152314524 -50013823 + GA-rich Low_complexity Low_complexity 3 64 0 1524 169 60 27 chr4 152316491 152316792 -50011555 - AluJo SINE Alu -1 311 1 240 306 0 32 chr4 152317752 152317814 -50010533 - L2 LINE L2 -12 3301 3242 271 337 29 83 chr4 152317936 152318141 -50010206 + L2 LINE L2 2985 3178 -94 693 291 94 28 chr4 152322743 152323062 -50005285 - MER102b DNA MER1_type 0 341 2 214 260 0 39 chr4 152323796 152323873 -50004474 + T-rich Low_complexity Low_complexity 4 77 0 2578 59 0 0 chr4 152325145 152325452 -50002895 - AluY SINE Alu -4 307 1 5561 106 32 2 chr4 152326743 152327575 -50000772 - L1PA16 LINE L1 -2 6164 5308 2335 71 6 10 chr4 152327798 152328109 -50000238 - AluSq SINE Alu -3 310 1 22 35 0 0 chr4 152328109 152328138 -50000209 + AT_rich Low_complexity Low_complexity 1 29 0 444 331 63 34 chr4 152328197 152328372 -49999975 + MER91A DNA MER1_type 17 196 0 2349 112 0 3 chr4 152330057 152330370 -49997977 - AluSx SINE Alu 0 312 1 841 313 48 4 chr4 152330587 152331041 -49997306 - L1MEc LINE L1 -4641 1755 1282 475 262 133 14 chr4 152331107 152331317 -49997030 - L1MEc LINE L1 -5320 885 651 25 0 0 0 chr4 152335298 152335323 -49993024 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 152336799 152336821 -49991526 + AT_rich Low_complexity Low_complexity 1 22 0 2287 161 32 10 chr4 152336850 152337255 -49991092 + MLT2C2 LTR ERVL 1 414 -50 305 93 0 0 chr4 152337351 152337405 -49990942 + MLT2C1 LTR ERVL 356 395 -2 1761 233 121 6 chr4 152338273 152338759 -49989588 - MLT1F LTR MaLR 0 542 1 811 204 72 28 chr4 152338997 152339247 -49989100 - MLT1B LTR MaLR -69 321 61 649 106 88 0 chr4 152339292 152339405 -49988942 - LTR33 LTR ERVL -14 507 385 916 161 0 32 chr4 152339415 152339570 -49988777 + FRAM SINE Alu 8 157 -19 852 261 187 6 chr4 152339588 152339914 -49988433 - LTR33 LTR ERVL -136 385 1 290 224 15 15 chr4 152340091 152340158 -49988189 + MLT1J LTR MaLR 98 164 -347 1333 201 63 39 chr4 152340883 152341297 -49987050 + LTR37A LTR ERV1 3 426 0 2158 134 33 6 chr4 152341350 152341715 -49986632 - THE1C LTR MaLR 0 375 1 371 225 23 16 chr4 152342454 152342583 -49985764 + MER31-int LTR ERV1 1316 1445 -3491 5397 213 72 43 chr4 152342762 152344569 -49983778 - L1M4 LINE L1 -2018 4128 2269 471 283 53 73 chr4 152345545 152345792 -49982555 - MIR SINE MIR -7 255 14 21 36 0 0 chr4 152346362 152346390 -49981957 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 152346477 152346498 -49981849 + AT_rich Low_complexity Low_complexity 1 21 0 1718 130 40 7 chr4 152346507 152346807 -49981540 + L1MA9 LINE L1 6000 6309 -3 1414 189 10 24 chr4 152346854 152347173 -49981174 + AluJo SINE Alu 2 302 0 1864 153 20 0 chr4 152347284 152347579 -49980768 + AluSx SINE Alu 1 301 -11 239 283 57 78 chr4 152347579 152347812 -49980535 - L1ME LINE L1 -291 5830 5601 228 67 0 0 chr4 152348387 152348417 -49979930 + (A)n Simple_repeat Simple_repeat 1 30 0 189 0 0 0 chr4 152351596 152351617 -49976730 + (T)n Simple_repeat Simple_repeat 1 21 0 1696 139 157 9 chr4 152352891 152353236 -49975111 - MSTD LTR MaLR 0 396 1 234 274 0 16 chr4 152353708 152353770 -49974577 - MIR SINE MIR -19 243 183 322 291 82 18 chr4 152353819 152353929 -49974418 + L2 LINE L2 3147 3263 -9 216 238 171 38 chr4 152354270 152354375 -49973972 + L2 LINE L2 1910 2028 -1286 1331 190 139 0 chr4 152356413 152356744 -49971603 - L1ME1 LINE L1 -7 6159 5783 784 153 0 15 chr4 152357226 152357357 -49970990 + FLAM_C SINE Alu 5 133 0 205 236 91 0 chr4 152357455 152357510 -49970837 - MIR SINE MIR -64 144 85 207 163 20 20 chr4 152358230 152358279 -49970068 + T-rich Low_complexity Low_complexity 5 53 0 1914 124 40 13 chr4 152358476 152358774 -49969573 - AluSx SINE Alu -6 306 1 21 36 0 0 chr4 152358894 152358922 -49969425 + AT_rich Low_complexity Low_complexity 1 28 0 27 49 0 0 chr4 152359607 152359648 -49968699 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr4 152360251 152360274 -49968073 + AT_rich Low_complexity Low_complexity 1 23 0 215 292 273 0 chr4 152361431 152361583 -49966764 + MIR SINE MIR 10 206 -56 749 159 13 7 chr4 152361951 152362102 -49966245 - L1P LINE L1 -890 5256 5105 597 209 15 0 chr4 152362116 152362250 -49966097 - L1 LINE L1 -2172 3974 3839 27826 29 2 1 chr4 152362257 152366375 -49961972 - L1PA3 LINE L1 0 6155 2032 237 195 24 0 chr4 152366373 152366414 -49961933 - L1P LINE L1 -2314 3832 3791 * 2157 113 7 7 chr4 152367074 152367375 -49960972 + AluSx SINE Alu 1 301 -11 870 115 8 0 chr4 152368578 152368708 -49959639 - FLAM_C SINE Alu -2 131 1 223 276 92 0 chr4 152369048 152369124 -49959223 + MIR3 SINE MIR 87 169 -39 25 75 0 0 chr4 152369730 152369783 -49958564 + AT_rich Low_complexity Low_complexity 1 53 0 458 311 129 40 chr4 152370198 152370423 -49957924 + MIR SINE MIR 16 260 -2 2217 180 38 11 chr4 152370798 152371247 -49957100 - MER65C LTR ERV1 0 461 1 266 312 87 36 chr4 152372423 152372561 -49955786 + MIR3 SINE MIR 58 202 -6 2460 71 0 0 chr4 152372641 152372937 -49955410 + AluY SINE Alu 1 296 -15 180 0 0 0 chr4 152374061 152374081 -49954266 + (T)n Simple_repeat Simple_repeat 1 20 0 186 259 0 37 chr4 152374391 152374445 -49953902 - L3 LINE CR1 -274 1303 1252 288 239 45 57 chr4 152375653 152375741 -49952606 + MIR SINE MIR 64 150 -58 817 200 117 15 chr4 152376028 152376233 -49952114 + Charlie1 DNA MER1_type 2 227 -2534 649 209 7 7 chr4 152376229 152376368 -49951979 + Charlie1 DNA MER1_type 2622 2760 -1 * 564 194 22 75 chr4 152377167 152377301 -49951046 + FLAM_A SINE Alu 1 127 -6 24 0 0 0 chr4 152377614 152377638 -49950709 + AT_rich Low_complexity Low_complexity 1 24 0 1198 280 78 25 chr4 152377701 152378173 -49950174 - MLT1J LTR MaLR 0 511 15 27 81 0 11 chr4 152378404 152378439 -49949908 + AT_rich Low_complexity Low_complexity 1 35 -51 742 161 25 0 chr4 152378439 152378557 -49949790 + FLAM_A SINE Alu 1 121 -12 27 81 0 11 chr4 152378557 152378608 -49949739 + AT_rich Low_complexity Low_complexity 35 86 0 2029 148 0 3 chr4 152379124 152379427 -49948920 - AluSx SINE Alu -10 302 1 22 80 0 0 chr4 152379752 152379802 -49948545 + AT_rich Low_complexity Low_complexity 1 50 0 1969 100 4 4 chr4 152379805 152380075 -49948272 + AluSq SINE Alu 1 270 -43 838 123 0 7 chr4 152380175 152380313 -49948034 - L1MB8 LINE L1 -350 5828 5692 2127 91 4 7 chr4 152380386 152380660 -49947687 - AluSx SINE Alu -39 273 1 2253 118 3 0 chr4 152380662 152380968 -49947379 - AluSx SINE Alu -5 307 1 266 301 194 38 chr4 152381123 152381654 -49946693 + L2 LINE L2 164 777 -2537 21 57 0 0 chr4 152382678 152382713 -49945634 + AT_rich Low_complexity Low_complexity 1 35 0 184 279 0 0 chr4 152383063 152383106 -49945241 + MER5A DNA MER1_type 147 189 0 472 236 0 0 chr4 152383159 152383269 -49945078 - L1MA10 LINE L1 -7 6327 6218 770 102 116 0 chr4 152383450 152383597 -49944750 - L1MB2 LINE L1 -1 6170 6007 295 122 0 0 chr4 152383597 152383638 -49944709 - U6 snRNA snRNA -66 41 1 13790 173 34 10 chr4 152384196 152386652 -49941695 + L1MA1 LINE L1 14 2529 -5036 2038 141 0 3 chr4 152386654 152386944 -49941403 + AluSc SINE Alu 3 291 -18 15262 153 19 19 chr4 152386946 152391108 -49937239 + L1MA1 LINE L1 3069 7234 -487 1873 164 0 0 chr4 152391108 152391407 -49936940 + AluJb SINE Alu 14 312 0 15262 153 19 19 chr4 152391407 152391739 -49936608 + L1MA1 LINE L1 7234 7565 -156 1036 259 27 17 chr4 152391919 152392216 -49936131 - LTR38 LTR ERV1 0 556 257 2154 103 14 3 chr4 152392222 152392513 -49935834 + AluSp SINE Alu 9 302 -11 427 167 0 0 chr4 152392717 152392783 -49935564 - FLAM_A SINE Alu -44 98 33 275 222 0 42 chr4 152393134 152393206 -49935141 - MER91 DNA MER1_type -61 129 61 1006 249 92 13 chr4 152393207 152393512 -49934835 - MLT1F LTR MaLR 0 542 214 207 0 0 0 chr4 152393845 152393868 -49934479 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1623 141 20 82 chr4 152394303 152394631 -49933716 + AluSx SINE Alu 1 309 0 320 60 60 0 chr4 152395123 152395173 -49933174 - MADE1 DNA Mariner 0 80 28 * 1796 163 52 3 chr4 152395165 152395490 -49932857 - MLT1A1 LTR MaLR -24 341 1 1690 160 9 38 chr4 152396072 152396390 -49931957 - AluJo SINE Alu -3 309 1 25 51 0 0 chr4 152397044 152397083 -49931264 + AT_rich Low_complexity Low_complexity 1 39 0 230 100 50 0 chr4 152397477 152397517 -49930830 - MLT1J LTR MaLR -41 470 429 2324 121 16 29 chr4 152397564 152397944 -49930403 + THE1C LTR MaLR 1 375 0 310 200 29 0 chr4 152397944 152398014 -49930333 - MLT1J LTR MaLR -367 144 73 342 199 23 23 chr4 152398175 152398306 -49930041 + (TA)n Simple_repeat Simple_repeat 1 131 0 38 68 0 0 chr4 152398313 152398386 -49929961 + AT_rich Low_complexity Low_complexity 1 73 0 260 247 136 0 chr4 152398488 152398569 -49929778 + MER89 LTR ERV1 1 92 -467 1799 188 14 22 chr4 152398569 152398937 -49929410 - MLT1A1 LTR MaLR 0 365 1 1301 273 58 19 chr4 152398937 152399296 -49929051 + MER89 LTR ERV1 186 558 -1 377 319 99 6 chr4 152399369 152399551 -49928796 + MIR SINE MIR 64 262 0 234 0 0 0 chr4 152399684 152399710 -49928637 + (TG)n Simple_repeat Simple_repeat 2 27 0 900 264 50 91 chr4 152399799 152400194 -49928153 + LTR16B LTR ERVL 1 374 -90 2400 87 0 0 chr4 152400194 152400492 -49927855 - AluY SINE Alu -13 298 1 900 264 50 91 chr4 152400492 152400580 -49927767 + LTR16B LTR ERVL 374 464 0 1569 89 0 5 chr4 152451236 152451438 -49876909 + AluY SINE Alu 101 301 -10 412 344 110 43 chr4 152451440 152452190 -49876157 - L2 LINE L2 -203 3069 2229 1734 168 7 17 chr4 152452190 152452481 -49875866 + AluJo SINE Alu 8 295 -17 412 344 110 43 chr4 152452481 152452688 -49875659 - L2 LINE L2 -1043 2229 2037 572 180 9 0 chr4 152452961 152453072 -49875275 - L1 LINE L1 -1358 4788 4677 * 1170 174 86 20 chr4 152453070 152453374 -49874973 + L1 LINE L1 4261 4584 -1562 1775 191 12 9 chr4 152453374 152453709 -49874638 - MLT1A1 LTR MaLR -29 336 1 286 318 24 8 chr4 152453713 152453839 -49874508 - L1M3d LINE L1 -5498 393 266 302 307 31 61 chr4 152453957 152454120 -49874227 - L1M3de LINE L1 -5219 1434 1277 318 238 0 25 chr4 152454198 152454278 -49874069 + MER7A DNA MER2_type 14 89 -257 39238 43 4 0 chr4 152454378 152459421 -49868926 - L1P LINE L1 -1086 5060 1 286 356 99 40 chr4 152460144 152460447 -49867900 + L3 LINE CR1 58 378 -1199 467 335 97 50 chr4 152460463 152460650 -49867697 - L2 LINE L2 -5 3267 3090 2374 83 0 3 chr4 152460650 152460952 -49867395 + AluY SINE Alu 1 301 -10 467 335 97 50 chr4 152460952 152461104 -49867243 - L2 LINE L2 -182 3090 2912 288 278 161 25 chr4 152461740 152461902 -49866445 - MIR SINE MIR -21 241 58 2231 108 3 7 chr4 152462091 152462388 -49865959 - AluSq SINE Alu -17 296 1 23 0 0 0 chr4 152463005 152463028 -49865319 + AT_rich Low_complexity Low_complexity 1 23 0 893 203 12 0 chr4 152463064 152463227 -49865120 + FRAM SINE Alu 2 166 -10 266 314 58 50 chr4 152464744 152464865 -49863482 - L2 LINE L2 -1 3271 3150 2238 93 14 0 chr4 152465173 152465462 -49862885 - AluSc SINE Alu -8 301 9 233 272 86 0 chr4 152466718 152466799 -49861548 + L2 LINE L2 2974 3061 -211 5639 142 47 14 chr4 152470512 152472620 -49855727 - L1MA3 LINE L1 0 6305 4125 25 51 0 0 chr4 152472900 152472939 -49855408 + AT_rich Low_complexity Low_complexity 1 39 0 29 0 0 0 chr4 152474081 152474110 -49854237 + AT_rich Low_complexity Low_complexity 1 29 0 1645 160 30 4 chr4 152474973 152475235 -49853112 - AluJo SINE Alu -30 282 14 229 170 0 64 chr4 152475239 152475286 -49853061 - Alu SINE Alu -258 44 1 823 153 249 0 chr4 152475337 152475526 -49852821 + MER46A DNA MER2_type 1 236 0 21 36 0 0 chr4 152475570 152475598 -49852749 + AT_rich Low_complexity Low_complexity 1 28 0 2021 128 14 0 chr4 152477279 152477561 -49850786 - AluSx SINE Alu -26 286 1 314 339 101 37 chr4 152479640 152479858 -49848489 - MIR SINE MIR -1 261 30 242 269 120 60 chr4 152479983 152480150 -49848197 - L2 LINE L2 -1388 1926 1750 1303 289 49 54 chr4 152480680 152481265 -49847082 - L2 LINE L2 -2 3311 2724 895 132 8 0 chr4 152483131 152483260 -49845087 - AluSg SINE Alu -180 130 1 4833 211 66 35 chr4 152483269 152484222 -49844125 - L1PB1 LINE L1 0 6151 5228 2360 81 0 3 chr4 152484222 152484520 -49843827 - AluY SINE Alu -14 297 1 4833 211 66 35 chr4 152484520 152485710 -49842637 - L1PB1 LINE L1 -923 5228 3871 884 128 10 61 chr4 152485711 152485786 -49842561 + MSTB-int LTR MaLR 1466 1543 -108 1973 164 7 7 chr4 152485786 152486096 -49842251 - AluSx SINE Alu -2 310 1 884 128 10 61 chr4 152486096 152486216 -49842131 + MSTB-int LTR MaLR 1543 1651 0 2321 152 54 7 chr4 152486216 152486623 -49841724 + MSTB LTR MaLR 1 426 0 2160 155 28 0 chr4 152486832 152487186 -49841161 - THE1B LTR MaLR 0 364 1 883 49 0 0 chr4 152487186 152487308 -49841039 - THE1B-int LTR MaLR 0 1580 1459 403 118 88 0 chr4 152487313 152487381 -49840966 - THE1C LTR MaLR -301 74 1 1603 197 27 20 chr4 152487626 152487925 -49840422 - AluJo SINE Alu -11 301 1 194 296 0 0 chr4 152488110 152488154 -49840193 + MIR SINE MIR 32 75 -133 273 246 246 8 chr4 152489289 152489411 -49838936 - MIR SINE MIR 0 262 112 25 31 0 0 chr4 152490234 152490266 -49838081 + AT_rich Low_complexity Low_complexity 1 32 0 32 26 0 0 chr4 152490497 152490536 -49837811 + AT_rich Low_complexity Low_complexity 1 39 0 366 195 0 0 chr4 152490986 152491063 -49837284 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 1984 231 81 76 chr4 152491125 152491609 -49836738 + MER21B LTR ERV1 1 492 -371 2237 131 0 0 chr4 152491609 152491921 -49836426 - AluSx SINE Alu 0 312 1 1984 231 81 76 chr4 152491921 152492247 -49836100 + MER21B LTR ERV1 492 815 -48 1529 170 43 22 chr4 152492271 152492578 -49835769 - AluJo SINE Alu 0 313 1 1378 213 135 31 chr4 152492932 152493354 -49834993 - MLT1D LTR MaLR -1 504 39 317 327 10 10 chr4 152493650 152493751 -49834596 - L1MC/D LINE L1 -2004 5804 5704 296 230 27 14 chr4 152494878 152494952 -49833395 - MIR3 SINE MIR -22 186 112 1880 221 114 15 chr4 152496773 152497367 -49830980 + L1MC4 LINE L1 7250 7902 -140 1958 154 3 0 chr4 152497467 152497765 -49830582 + AluSx SINE Alu 1 299 -13 508 219 53 46 chr4 152497856 152498007 -49830340 + MIR SINE MIR 90 241 -21 7412 251 38 38 chr4 152498412 152501194 -49827153 + L1PA12 LINE L1 1 2784 -4800 1344 200 96 7 chr4 152501194 152501464 -49826883 - AluJb SINE Alu -18 294 1 7412 251 38 38 chr4 152501464 152502423 -49825924 + L1PA12 LINE L1 2784 3736 -3848 2803 19 0 0 chr4 152502423 152502733 -49825614 + AluYb8 SINE Alu 1 310 -8 7412 251 38 38 chr4 152502733 152503504 -49824843 + L1PA12 LINE L1 3736 4506 -3078 202 339 123 31 chr4 152505447 152505577 -49822770 + L2 LINE L2 2904 3045 -227 492 208 0 0 chr4 152505740 152505846 -49822501 - L1MA5A LINE L1 0 6297 6192 7539 31 15 0 chr4 152506538 152507495 -49820852 - L1PA4 LINE L1 0 6155 5196 987 177 0 11 chr4 152507595 152507770 -49820577 + Tigger3(Golem) DNA MER2_type 2856 3028 -1 426 269 28 7 chr4 152507773 152507914 -49820433 - L1M3d LINE L1 -5737 154 11 189 367 86 22 chr4 152507938 152508077 -49820270 + L3 LINE CR1 1355 1502 -75 710 224 33 49 chr4 152508088 152508271 -49820076 + MIR3 SINE MIR 19 198 -10 2272 93 30 6 chr4 152508925 152509258 -49819089 + L1PB1 LINE L1 5811 6151 0 207 209 23 0 chr4 152510431 152510474 -49817873 - L2 LINE L2 0 3313 3270 983 211 79 46 chr4 152512411 152512696 -49815651 + LTR56 LTR ERV1 1 306 -139 2292 165 31 0 chr4 152512696 152513115 -49815232 + MSTB1 LTR MaLR 1 432 0 983 211 79 46 chr4 152513115 152513260 -49815087 + LTR56 LTR ERV1 306 445 0 25 65 0 0 chr4 152513294 152513340 -49815007 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr4 152513464 152513487 -49814860 + AT_rich Low_complexity Low_complexity 1 23 0 325 275 228 30 chr4 152515393 152515560 -49812787 + MIR3 SINE MIR 9 208 0 385 275 0 0 chr4 152515819 152515910 -49812437 + L2 LINE L2 3223 3313 0 197 362 29 29 chr4 152516002 152516140 -49812207 + L2 LINE L2 2898 3035 -237 2483 166 63 11 chr4 152516533 152517008 -49811339 - MLT1D LTR MaLR -1 504 5 505 284 58 26 chr4 152517805 152517995 -49810352 - MIR3 SINE MIR -7 201 6 218 251 222 0 chr4 152520559 152520641 -49807706 - MIR3 SINE MIR -5 203 103 1747 204 81 26 chr4 152520871 152521330 -49807017 - L1ME1 LINE L1 -16 6150 5659 526 90 13 0 chr4 152521330 152521408 -49806939 + MADE1 DNA Mariner 2 80 0 1747 204 81 26 chr4 152521408 152521453 -49806894 - L1ME1 LINE L1 -507 5659 5618 662 257 7 0 chr4 152523535 152523687 -49804660 + MER63A DNA MER1_type 57 209 -1 220 141 51 64 chr4 152524483 152524561 -49803786 + A-rich Low_complexity Low_complexity 3 79 0 270 260 0 0 chr4 152524921 152524994 -49803353 + HAL1 LINE L1 1516 1588 -919 2404 63 0 22 chr4 152525280 152525597 -49802750 + AluY SINE Alu 1 310 -1 872 186 33 65 chr4 152525988 152526203 -49802144 + MER20 DNA MER1_type 6 213 -6 180 111 0 0 chr4 152527173 152527200 -49801147 + (A)n Simple_repeat Simple_repeat 1 27 0 1709 181 0 7 chr4 152527387 152527675 -49800672 + AluJo SINE Alu 1 286 -26 1995 211 74 18 chr4 152527747 152528236 -49800111 + LTR31 LTR ERV1 104 619 0 1819 169 31 13 chr4 152528745 152529193 -49799154 + MER89 LTR ERV1 1 556 -3 225 309 85 21 chr4 152530350 152530444 -49797903 - L2 LINE L2 -5 3267 3168 213 39 0 0 chr4 152530504 152530530 -49797817 + (TG)n Simple_repeat Simple_repeat 1 26 0 2043 139 0 10 chr4 152530867 152531169 -49797178 - AluSx SINE Alu -13 299 1 478 257 50 0 chr4 152531921 152532061 -49796286 + MER103 DNA DNA 18 164 -2 416 318 47 8 chr4 152533362 152533491 -49794856 - L2 LINE L2 0 3272 3139 * 489 246 8 8 chr4 152533490 152533608 -49794739 + L2 LINE L2 3190 3307 -6 447 225 8 16 chr4 152533608 152533737 -49794610 - L1MEd LINE L1 -5302 817 690 228 35 0 0 chr4 152533849 152533878 -49794469 + (CAA)n Simple_repeat Simple_repeat 2 30 0 279 323 157 10 chr4 152534584 152534782 -49793565 - MIR SINE MIR 0 262 36 389 313 189 4 chr4 152534958 152535185 -49793162 - L2 LINE L2 -11 3302 3034 22 0 0 0 chr4 152536617 152536639 -49791708 + AT_rich Low_complexity Low_complexity 1 22 0 661 278 141 9 chr4 152538777 152539004 -49789343 + MIR SINE MIR 5 261 -1 295 29 0 0 chr4 152540077 152540112 -49788235 + (TTTA)n Simple_repeat Simple_repeat 4 76 0 986 182 0 0 chr4 152540112 152540260 -49788087 - AluSg/x SINE Alu -33 279 132 863 256 193 16 chr4 152540870 152541191 -49787156 - L2 LINE L2 0 3313 2936 559 304 63 56 chr4 152541394 152541457 -49786890 + LTR67 LTR ERVL 31 92 -465 1533 96 50 0 chr4 152541457 152541676 -49786671 + MER30 DNA MER1_type 1 230 0 559 304 63 56 chr4 152541676 152541898 -49786449 + LTR67 LTR ERVL 92 318 -239 360 266 43 0 chr4 152542172 152542266 -49786081 - L2 LINE L2 0 3313 3216 187 293 0 0 chr4 152542335 152542376 -49785971 + MIR SINE MIR 204 244 -18 212 374 48 12 chr4 152542847 152543013 -49785334 - L2 LINE L2 -926 2388 2217 960 189 22 63 chr4 152544146 152544368 -49783979 - MER20 DNA MER1_type -6 213 1 205 173 173 62 chr4 152544694 152544775 -49783572 + MIR SINE MIR 60 149 -113 180 0 0 0 chr4 152545081 152545101 -49783246 + (A)n Simple_repeat Simple_repeat 1 20 0 191 88 29 0 chr4 152545483 152545517 -49782830 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 212 86 29 0 chr4 152547218 152547253 -49781094 + (TATAA)n Simple_repeat Simple_repeat 4 39 0 306 188 0 25 chr4 152547973 152548053 -49780294 - MER116 DNA Mariner 0 80 3 594 290 19 18 chr4 152548063 152548260 -49780087 + MIR3 SINE MIR 2 201 -7 216 247 75 110 chr4 152548516 152548662 -49779685 - MIR SINE MIR -48 214 74 356 319 90 56 chr4 152548799 152549065 -49779282 + L2 LINE L2 2992 3266 -6 1676 100 5 0 chr4 152549220 152549430 -49778917 + AluSp SINE Alu 84 294 -19 4395 197 32 30 chr4 152550819 152552689 -49775658 + L1MA3 LINE L1 4409 6277 -28 29 0 0 0 chr4 152552708 152552737 -49775610 + AT_rich Low_complexity Low_complexity 1 29 0 246 62 0 0 chr4 152552926 152552958 -49775389 + (TG)n Simple_repeat Simple_repeat 1 32 0 2002 158 70 55 chr4 152554104 152554561 -49773786 + MLT2C2 LTR ERVL 1 464 0 2115 140 30 19 chr4 152555143 152555514 -49772833 + THE1C LTR MaLR 1 375 0 9433 130 30 16 chr4 152555514 152557173 -49771174 + THE1C-int LTR MaLR 1 1579 -1 1861 138 61 28 chr4 152557174 152557537 -49770810 + THE1C LTR MaLR 1 375 0 1420 202 18 22 chr4 152557537 152557814 -49770533 - AluJo SINE Alu -36 276 1 1534 210 0 4 chr4 152559269 152559541 -49768806 - AluJo SINE Alu -40 272 2 23 0 0 0 chr4 152560845 152560868 -49767479 + AT_rich Low_complexity Low_complexity 1 23 0 2905 9 0 0 chr4 152560894 152561212 -49767135 - AluYb8 SINE Alu 0 318 1 1879 158 14 0 chr4 152561380 152561677 -49766670 - AluSx SINE Alu -9 303 3 1785 213 48 77 chr4 152561868 152562412 -49765935 - MLT1E LTR MaLR -8 585 58 599 279 19 12 chr4 152562451 152562612 -49765735 + MER5B DNA MER1_type 6 167 -11 2045 132 0 3 chr4 152562858 152563154 -49765193 - AluSx SINE Alu -17 295 1 2226 162 38 50 chr4 152565037 152565592 -49762755 + L1MB8 LINE L1 5630 6177 -1 21 36 0 0 chr4 152565616 152565644 -49762703 + AT_rich Low_complexity Low_complexity 1 28 0 434 267 207 13 chr4 152566131 152566281 -49762066 - MIR3 SINE MIR -5 203 25 323 305 78 85 chr4 152566628 152566900 -49761447 + L2 LINE L2 2430 2702 -612 1499 214 30 56 chr4 152566900 152567273 -49761074 + MLT1A1 LTR MaLR 1 363 -2 323 305 78 85 chr4 152567273 152567359 -49760988 + L2 LINE L2 2702 2787 -527 1367 101 101 0 chr4 152567359 152567568 -49760779 - MER30 DNA MER1_type 0 230 1 323 305 78 85 chr4 152567568 152567631 -49760716 + L2 LINE L2 2787 2849 -465 41990 40 5 3 chr4 152567814 152573993 -49754354 - L1PA3 LINE L1 0 6155 2 388 214 175 10 chr4 152574121 152574224 -49754123 + L2 LINE L2 3184 3303 -10 705 199 19 6 chr4 152574887 152575043 -49753304 - Charlie4 DNA MER1_type 0 1961 1804 3049 168 34 10 chr4 152575043 152575658 -49752689 + L1MB4 LINE L1 5551 6180 0 531 96 0 0 chr4 152575664 152575747 -49752600 + L1MB8 LINE L1 6093 6175 -3 446 250 26 81 chr4 152575760 152576032 -49752315 - Charlie4 DNA MER1_type -1686 275 19 1090 181 135 45 chr4 152578068 152578334 -49750013 - AluJo SINE Alu -12 290 1 21 0 0 0 chr4 152578542 152578563 -49749784 + AT_rich Low_complexity Low_complexity 1 21 0 537 115 0 0 chr4 152578563 152578718 -49749629 - L1PA16 LINE L1 -9 6157 5968 256 248 211 37 chr4 152578873 152578982 -49749365 + MIR SINE MIR 123 250 -12 24 32 0 0 chr4 152579622 152579653 -49748694 + AT_rich Low_complexity Low_complexity 1 31 0 204 229 0 0 chr4 152579927 152579975 -49748372 - L2 LINE L2 -1 3312 3265 22 0 0 0 chr4 152580364 152580386 -49747961 + AT_rich Low_complexity Low_complexity 1 22 0 12332 87 1 0 chr4 152581210 152582930 -49745417 - L1PA5 LINE L1 -4362 1784 64 27738 45 2 0 chr4 152582941 152587297 -49741050 + L1PA5 LINE L1 1784 6145 -9 345 256 56 72 chr4 152588817 152588997 -49739350 - L1ME4a LINE L1 -12 6109 5933 203 133 22 0 chr4 152589009 152589054 -49739293 + (TA)n Simple_repeat Simple_repeat 2 47 0 21 0 0 0 chr4 152589372 152589393 -49738954 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr4 152589622 152589665 -49738682 + AT_rich Low_complexity Low_complexity 1 43 0 1563 164 55 33 chr4 152590910 152591424 -49736923 + MER51A LTR ERV1 1 618 -16 356 203 0 0 chr4 152591479 152591548 -49736799 - MIR SINE MIR -14 248 180 1105 184 142 45 chr4 152591548 152591885 -49736462 + MLT1D LTR MaLR 1 370 -135 13507 196 15 29 chr4 152591922 152594498 -49733849 + L1PB1 LINE L1 6 2615 -4252 1869 80 11 11 chr4 152594498 152594761 -49733586 + L1PA7 LINE L1 5877 6139 -15 13507 196 15 29 chr4 152594761 152598778 -49729569 + L1PB1 LINE L1 2615 6867 0 929 159 0 0 chr4 152598785 152598936 -49729411 + MLT1D LTR MaLR 353 503 -2 473 324 81 0 chr4 152598937 152599085 -49729262 - MIR SINE MIR -77 185 26 219 36 0 0 chr4 152599262 152599290 -49729057 + (CAA)n Simple_repeat Simple_repeat 2 29 0 943 188 0 12 chr4 152599623 152599788 -49728559 + FAM SINE Alu 4 166 -9 721 86 0 34 chr4 152600063 152600180 -49728167 + L1PB1 LINE L1 6039 6151 0 500 198 0 10 chr4 152600181 152600277 -49728070 + MLT1D LTR MaLR 355 449 -56 414 306 132 18 chr4 152600277 152600496 -49727851 + MIR SINE MIR 14 257 -5 23 0 0 0 chr4 152600840 152600863 -49727484 + AT_rich Low_complexity Low_complexity 1 23 0 506 247 110 7 chr4 152600898 152601052 -49727295 - MIR SINE MIR -50 212 43 4200 120 7 70 chr4 152602145 152602918 -49725429 + L1PA14 LINE L1 5435 6158 -3 643 48 0 0 chr4 152603390 152603474 -49724873 - L1PA7 LINE L1 0 6154 6071 306 300 124 90 chr4 152608751 152609605 -49718742 - L1M2 LINE L1 -5560 1289 469 198 0 0 0 chr4 152610230 152610252 -49718095 + (T)n Simple_repeat Simple_repeat 1 22 0 25 0 0 0 chr4 152611054 152611079 -49717268 + AT_rich Low_complexity Low_complexity 1 25 0 379 324 49 36 chr4 152611366 152611591 -49716756 + L2 LINE L2 1710 1937 -1377 440 271 51 8 chr4 152611734 152611852 -49716495 + L2 LINE L2 3136 3258 -14 186 71 0 0 chr4 152611852 152611880 -49716467 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 537 256 0 0 chr4 152612277 152612394 -49715953 + MIR SINE MIR 146 262 0 200 86 29 0 chr4 152612997 152613032 -49715315 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 184 258 76 30 chr4 152613061 152613127 -49715220 - MIR SINE MIR -131 131 63 2387 62 3 0 chr4 152613512 152613841 -49714506 + AluY SINE Alu 1 311 0 1615 161 30 0 chr4 152615107 152615406 -49712941 + L1MA9 LINE L1 6005 6312 0 4760 157 30 48 chr4 152615417 152616348 -49711999 - L1PA16 LINE L1 -3 6163 5217 2084 115 4 0 chr4 152616348 152616627 -49711720 + AluSx SINE Alu 1 280 -32 246 32 0 0 chr4 152616630 152616661 -49711686 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4760 157 30 48 chr4 152616661 152617302 -49711045 - L1PA16 LINE L1 -951 5215 4618 1621 195 5 77 chr4 152617330 152617746 -49710601 - MLT1B LTR MaLR -1 389 4 1897 211 33 21 chr4 152617757 152618178 -49710169 - MLT1B-int LTR MaLR -9 1362 937 1200 196 61 60 chr4 152618755 152619171 -49709176 + MLT2B1 LTR ERVL 1 518 -36 312 27 0 0 chr4 152619171 152619208 -49709139 + (TA)n Simple_repeat Simple_repeat 2 38 0 1200 196 61 60 chr4 152619208 152619246 -49709101 + MLT2B1 LTR ERVL 518 554 0 1570 151 13 47 chr4 152619357 152619655 -49708692 + AluJo SINE Alu 9 296 -16 314 298 11 11 chr4 152622092 152622186 -49706161 - L1MC4 LINE L1 -1335 6707 6614 277 313 45 56 chr4 152624134 152624332 -49704015 + L2 LINE L2 3117 3312 -1 7564 33 0 0 chr4 152625264 152626697 -49701650 - L1PA3 LINE L1 0 6155 4723 12018 25 1 0 chr4 152626698 152628191 -49700156 + L1PA3 LINE L1 3232 4725 -1421 239 321 9 0 chr4 152628226 152628338 -49700009 - L1MC4 LINE L1 0 8042 7930 237 296 72 16 chr4 152628520 152628645 -49699702 - L1MC4 LINE L1 -305 7737 7606 1022 338 66 49 chr4 152628699 152630214 -49698133 + MERVL LTR ERVL 499 2243 -3411 309 238 66 25 chr4 152630263 152630385 -49697962 + MERVL LTR ERVL 4749 4875 -610 1633 149 55 115 chr4 152630715 152631131 -49697216 - MSTD LTR MaLR 0 396 6 564 288 74 70 chr4 152631481 152631583 -49696764 + LTR16A1 LTR ERVL 158 258 -199 1042 198 53 5 chr4 152631583 152631790 -49696557 - MER20 DNA MER1_type -1 218 2 564 288 74 70 chr4 152631790 152631986 -49696361 + LTR16A1 LTR ERVL 258 457 0 934 265 46 88 chr4 152632020 152632203 -49696144 + L1ME LINE L1 5009 5198 -972 1900 154 10 6 chr4 152632203 152632514 -49695833 + AluJo SINE Alu 1 312 0 934 265 46 88 chr4 152632514 152633127 -49695220 + L1ME LINE L1 5198 5777 -393 202 188 0 0 chr4 152633344 152633376 -49694971 + polypurine Low_complexity Low_complexity 3 34 0 22 0 0 0 chr4 152633445 152633467 -49694880 + AT_rich Low_complexity Low_complexity 1 22 0 2744 10 0 0 chr4 152633938 152634248 -49694099 - L1PA2 LINE L1 0 6155 5846 290 331 93 35 chr4 152634327 152634671 -49693676 + L2 LINE L2 2254 2617 -697 24 32 0 0 chr4 152635327 152635358 -49692989 + AT_rich Low_complexity Low_complexity 1 31 0 606 303 76 37 chr4 152635530 152635963 -49692384 + MLT1J2 LTR MaLR 1 450 0 260 276 0 0 chr4 152636266 152636324 -49692023 - MLT1J LTR MaLR -314 197 140 243 212 30 0 chr4 152636815 152636881 -49691466 + MADE1 DNA Mariner 1 68 -12 368 371 70 33 chr4 152636917 152637464 -49690883 + L2 LINE L2 2540 3107 -165 1402 228 72 25 chr4 152637465 152637909 -49690438 - MLT1C LTR MaLR 0 467 3 1955 141 47 44 chr4 152638798 152639161 -49689186 - THE1B LTR MaLR 0 364 1 1021 188 23 28 chr4 152639443 152639661 -49688686 + MER20 DNA MER1_type 3 219 0 3482 222 34 19 chr4 152640015 152640785 -49687562 + LTR39 LTR ERV1 3 783 0 487 279 77 73 chr4 152641224 152641511 -49686836 + L2 LINE L2 2982 3269 -44 * 918 257 16 37 chr4 152641505 152641750 -49686597 - MIR SINE MIR -22 240 1 242 254 45 0 chr4 152641750 152641810 -49686537 + L2 LINE L2 3242 3304 -9 4135 131 12 6 chr4 152641822 152642462 -49685885 - L1PA15 LINE L1 -33 6132 5489 990 115 127 0 chr4 152642462 152642619 -49685728 - MSTA LTR MaLR 0 428 252 765 110 0 0 chr4 152642633 152642742 -49685605 - MSTA LTR MaLR -319 109 1 1443 151 62 30 chr4 152642742 152643047 -49685300 - MSTA-int LTR MaLR 0 1651 1337 6131 161 6 12 chr4 152643059 152645020 -49683327 - L1PB1 LINE L1 -9 6142 4195 1243 46 0 0 chr4 152645033 152645184 -49683163 + L1PA7 LINE L1 5996 6146 -8 180 175 100 0 chr4 152645218 152645258 -49683089 - L2 LINE L2 0 3313 3270 2002 157 13 34 chr4 152645608 152645991 -49682356 + THE1C LTR MaLR 1 375 0 493 193 53 58 chr4 152647673 152647700 -49680647 - L1MC/D LINE L1 -2366 5442 5416 1499 197 16 23 chr4 152647700 152648004 -49680343 - AluJo SINE Alu -10 302 1 493 193 53 58 chr4 152648004 152648147 -49680200 - L1MC/D LINE L1 -2392 5416 5273 1343 319 103 69 chr4 152648200 152648457 -49679890 - L1MC/D LINE L1 -953 5193 4946 333 0 0 0 chr4 152648457 152648494 -49679853 + (TA)n Simple_repeat Simple_repeat 1 37 0 1343 319 103 69 chr4 152648494 152648879 -49679468 - L1MC/D LINE L1 -1200 4946 4576 1584 138 0 0 chr4 152648879 152649125 -49679222 - L1PA16 LINE L1 -9 6157 5912 1343 319 103 69 chr4 152649125 152650606 -49677741 - L1MC/D LINE L1 -1570 4576 2997 258 288 0 0 chr4 152650627 152650686 -49677661 - MIR SINE MIR 0 262 204 187 103 51 0 chr4 152650769 152650808 -49677539 + (CAA)n Simple_repeat Simple_repeat 2 42 0 230 239 45 15 chr4 152651859 152651926 -49676421 + MLT1K LTR MaLR 516 584 -4 21 0 0 0 chr4 152652269 152652290 -49676057 + AT_rich Low_complexity Low_complexity 1 21 0 240 186 0 0 chr4 152652410 152652453 -49675894 - L2 LINE L2 -7 3306 3264 1240 117 0 0 chr4 152653052 152653223 -49675124 - AluSg/x SINE Alu -8 304 134 228 67 0 0 chr4 152653232 152653262 -49675085 + (TTCTCC)n Simple_repeat Simple_repeat 1 30 0 486 112 0 61 chr4 152653262 152653360 -49674987 - L1PB1 LINE L1 0 6151 6060 207 0 0 0 chr4 152653461 152653484 -49674863 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2209 121 67 36 chr4 152654242 152654630 -49673717 + MSTA LTR MaLR 1 400 -28 415 0 36 0 chr4 152654630 152654685 -49673662 + (TA)n Simple_repeat Simple_repeat 1 57 0 495 50 0 0 chr4 152654704 152654764 -49673583 - L1PA5 LINE L1 -70 6084 6025 258 71 143 0 chr4 152654764 152654806 -49673541 + MSTA LTR MaLR 381 428 0 1771 180 7 7 chr4 152655607 152655902 -49672445 - AluJb SINE Alu -17 295 1 26768 138 12 14 chr4 152656063 152662481 -49665866 + L1PA7 LINE L1 1 6467 -2 2859 184 12 10 chr4 152665327 152665842 -49662505 + MLT2B1 LTR ERVL 3 518 -2 570 286 19 12 chr4 152666731 152666892 -49661455 + MER5B DNA MER1_type 1 162 -16 21 0 0 0 chr4 152666910 152666931 -49661416 + AT_rich Low_complexity Low_complexity 1 21 0 2157 191 6 2 chr4 152667215 152667606 -49660741 - MLT1B LTR MaLR -3 393 1 21 36 0 0 chr4 152667662 152667690 -49660657 + AT_rich Low_complexity Low_complexity 1 28 0 5610 175 37 27 chr4 152668141 152668949 -49659398 - L1MC3 LINE L1 0 7785 6987 1219 228 26 61 chr4 152668949 152669327 -49659020 + MLT1A1 LTR MaLR 1 365 0 1959 184 55 21 chr4 152669336 152669754 -49658593 - MSTB1 LTR MaLR 0 432 1 5610 175 37 27 chr4 152669754 152670114 -49658233 - L1MC3 LINE L1 -805 6980 6595 26 30 0 0 chr4 152670115 152670148 -49658199 + AT_rich Low_complexity Low_complexity 1 33 0 1973 155 22 11 chr4 152670148 152670510 -49657837 - L1PA16 LINE L1 -9 6157 5792 1592 112 29 62 chr4 152670510 152670786 -49657561 + L1PA16 LINE L1 5514 5780 -386 * 1706 164 26 167 chr4 152670782 152671392 -49656955 - L1MC3 LINE L1 -1762 6023 5500 277 333 0 0 chr4 152671405 152671483 -49656864 - LTR33 LTR ERVL -70 451 374 614 333 21 42 chr4 152671513 152671801 -49656546 - LTR33 LTR ERVL -226 295 14 431 274 83 18 chr4 152672617 152672785 -49655562 + L2 LINE L2 1870 2048 -1266 777 289 10 0 chr4 152672786 152672983 -49655364 + MIR SINE MIR 28 226 -36 423 178 156 0 chr4 152673009 152673099 -49655248 + MER63 DNA MER1_type 1 730 -332 34 55 0 0 chr4 152673101 152673156 -49655191 + AT_rich Low_complexity Low_complexity 1 55 0 12894 206 62 23 chr4 152673159 152677911 -49650436 - L1PA16 LINE L1 -9 6860 1803 243 0 0 0 chr4 152677911 152677938 -49650409 + (TG)n Simple_repeat Simple_repeat 2 28 0 12894 206 62 23 chr4 152677938 152678426 -49649921 - L1PA16 LINE L1 -5066 1803 1336 472 216 0 0 chr4 152678416 152678504 -49649843 - L1PA16 LINE L1 -5290 1559 1472 * 288 315 43 52 chr4 152678504 152678831 -49649516 - L1PA16 LINE L1 -5286 1563 1240 332 274 12 0 chr4 152678922 152679006 -49649341 - L1M2 LINE L1 -6752 97 13 1793 189 93 5 chr4 152679093 152679512 -49648835 - L1M4 LINE L1 -448 5670 5215 185 326 22 11 chr4 152679512 152679601 -49648746 + L2 LINE L2 2186 2275 -1039 296 346 0 0 chr4 152679881 152679982 -49648365 + L2 LINE L2 2687 2787 -527 512 367 14 14 chr4 152679993 152680203 -49648144 + L3 LINE CR1 1366 1575 -2 25 31 0 0 chr4 152680752 152680784 -49647563 + AT_rich Low_complexity Low_complexity 1 32 0 191 333 0 58 chr4 152681336 152681423 -49646924 + L2 LINE L2 529 610 -2704 1787 187 25 22 chr4 152681637 152682001 -49646346 + MLT1A1 LTR MaLR 1 365 0 3641 103 13 24 chr4 152682090 152682644 -49645703 + LTR14 LTR ERVK 1 548 0 38 39 0 0 chr4 152682836 152682888 -49645459 + AT_rich Low_complexity Low_complexity 1 52 0 478 309 73 33 chr4 152683040 152683341 -49645006 - L1M4 LINE L1 -1971 4175 3863 284 98 98 0 chr4 152683356 152683458 -49644889 + (TA)n Simple_repeat Simple_repeat 2 113 0 1767 253 62 19 chr4 152683633 152684316 -49644031 - L1M4 LINE L1 -945 5135 4424 226 250 0 0 chr4 152684381 152684433 -49643914 + MLT1B LTR MaLR 1 52 -338 736 260 72 39 chr4 152684436 152685013 -49643334 - L1ME LINE L1 -4846 1415 777 2306 84 0 17 chr4 152685013 152685310 -49643037 - AluSx SINE Alu -20 292 1 736 260 72 39 chr4 152685310 152685390 -49642957 - L1ME LINE L1 -5484 777 701 303 225 107 112 chr4 152685562 152685740 -49642607 + L3 LINE CR1 1088 1264 -313 321 271 163 26 chr4 152687127 152687282 -49641065 + MER5A DNA MER1_type 14 178 0 218 393 44 7 chr4 152687400 152687535 -49640812 - L2 LINE L2 0 3313 3174 2127 188 34 7 chr4 152687670 152688084 -49640263 + MSTB LTR MaLR 2 426 0 5000 196 58 36 chr4 152688084 152688273 -49640074 + MSTB-int LTR MaLR 1 184 -1396 1926 133 0 0 chr4 152688273 152688544 -49639803 + AluSx SINE Alu 40 310 -2 5000 196 58 36 chr4 152688544 152689802 -49638545 + MSTB-int LTR MaLR 184 1566 -14 2158 177 28 53 chr4 152689815 152690008 -49638339 + MSTB LTR MaLR 2 198 -228 7748 19 2 0 chr4 152690008 152691271 -49637076 - L1PA4 LINE L1 -8 6147 4884 2158 177 28 53 chr4 152691271 152691513 -49636834 + MSTB LTR MaLR 198 426 0 24 0 0 0 chr4 152692125 152692149 -49636198 + AT_rich Low_complexity Low_complexity 1 24 0 210 305 85 53 chr4 152692448 152692730 -49635617 - L2 LINE L2 -1124 2190 1900 2063 100 0 0 chr4 152693216 152693487 -49634860 - AluSc SINE Alu -38 271 1 407 260 10 0 chr4 152694130 152694226 -49634121 + MER5C DNA MER1_type 28 124 -200 260 253 139 0 chr4 152694238 152694317 -49634030 + MER5C DNA MER1_type 228 317 -7 1032 231 67 50 chr4 152694581 152695058 -49633289 - L1M4 LINE L1 -1823 4323 3839 25 51 0 0 chr4 152695092 152695131 -49633216 + AT_rich Low_complexity Low_complexity 1 39 0 40 0 0 0 chr4 152695205 152695245 -49633102 + AT_rich Low_complexity Low_complexity 1 40 0 1513 174 68 11 chr4 152695245 152695510 -49632837 - AluJo SINE Alu -27 285 6 25 31 0 0 chr4 152695666 152695698 -49632649 + AT_rich Low_complexity Low_complexity 1 32 0 1005 188 25 15 chr4 152696501 152696698 -49631649 - L1MC1 LINE L1 -7 6326 6128 2271 91 3 7 chr4 152696698 152697007 -49631340 - AluSc SINE Alu -1 308 1 24 32 0 0 chr4 152697561 152697592 -49630755 + AT_rich Low_complexity Low_complexity 1 31 0 729 125 8 17 chr4 152697716 152697836 -49630511 + MSTC LTR MaLR 306 424 -4 739 138 0 9 chr4 152697993 152698109 -49630238 - MER1B DNA MER1_type 0 339 225 1453 88 0 0 chr4 152698139 152698331 -49630016 - AluY SINE Alu -1 310 119 21 36 0 0 chr4 152698979 152699007 -49629340 + AT_rich Low_complexity Low_complexity 1 28 0 247 247 41 93 chr4 152699126 152699223 -49629124 - MIR3 SINE MIR -14 194 103 345 324 27 9 chr4 152699488 152699599 -49628748 + MIR SINE MIR 34 146 -116 2597 61 3 0 chr4 152699905 152700234 -49628113 - L1PA7 LINE L1 0 6154 5825 239 130 0 22 chr4 152701332 152701378 -49626969 + (TG)n Simple_repeat Simple_repeat 2 46 0 259 252 140 37 chr4 152701466 152701573 -49626774 - MIR SINE MIR -77 185 68 713 217 38 6 chr4 152701787 152701957 -49626390 - L1ME LINE L1 -535 5634 5466 1405 170 16 110 chr4 152702000 152702383 -49625964 + MLT1A1 LTR MaLR 19 365 0 2263 103 0 6 chr4 152702406 152702718 -49625629 - AluSx SINE Alu -2 310 1 728 167 95 0 chr4 152702733 152702935 -49625412 - L1M3 LINE L1 -743 5403 5217 205 337 138 33 chr4 152702953 152703134 -49625213 - MIR SINE MIR -61 201 2 235 237 0 0 chr4 152703164 152703223 -49625124 + A-rich Low_complexity Low_complexity 1 59 0 1032 134 5 49 chr4 152703980 152704203 -49624144 + L1MA4 LINE L1 6087 6299 -1 2058 184 45 47 chr4 152704221 152704727 -49623620 - MLT1D LTR MaLR 0 505 1 400 231 77 0 chr4 152705962 152706079 -49622268 - MIR SINE MIR -114 148 23 283 138 103 0 chr4 152706458 152706516 -49621831 - L1MB2 LINE L1 -4 6167 6104 * 360 232 134 10 chr4 152706489 152706811 -49621536 - L1MA3 LINE L1 -163 6015 5677 1049 182 4 20 chr4 152706819 152707086 -49621261 + L1M3 LINE L1 5237 5499 -681 2086 149 120 8 chr4 152707731 152708114 -49620233 - MSTA LTR MaLR 0 428 3 9333 144 18 21 chr4 152708116 152709697 -49618650 - MSTA-int LTR MaLR 0 1580 4 1611 146 232 11 chr4 152709702 152710051 -49618296 - MSTA LTR MaLR -2 426 1 7670 51 1 1 chr4 152711478 152713260 -49615087 + L1PA5 LINE L1 4420 6154 0 21 36 0 0 chr4 152713713 152713741 -49614606 + AT_rich Low_complexity Low_complexity 1 28 0 7427 29 7 1 chr4 152713788 152715110 -49613237 + L1PA3 LINE L1 4829 6155 0 239 343 0 0 chr4 152715116 152715183 -49613164 - MIR3 SINE MIR -41 167 101 471 278 95 18 chr4 152716559 152716728 -49611619 - MIR SINE MIR -4 258 77 349 228 13 38 chr4 152717701 152717780 -49610567 + MSTB2 LTR MaLR 1 84 -351 575 258 86 0 chr4 152718216 152718402 -49609945 + HsTC2 DNA Tc2 6 207 -1691 342 198 60 35 chr4 152718515 152718631 -49609716 + HsTC2 DNA Tc2 1768 1886 -12 665 180 0 7 chr4 152718773 152718912 -49609435 - LTR37A LTR ERV1 0 426 289 1651 257 30 11 chr4 152719013 152719472 -49608875 - L1ME3A LINE L1 -292 6138 5671 834 288 53 64 chr4 152719489 152719907 -49608440 - L1ME3A LINE L1 -816 5590 5182 1934 159 0 6 chr4 152719907 152720221 -49608126 - AluSx SINE Alu 0 312 1 834 288 53 64 chr4 152720221 152720553 -49607794 - L1ME3A LINE L1 -1224 5182 4848 831 268 86 22 chr4 152721217 152721717 -49606630 - L1ME3A LINE L1 -1617 4789 4258 1748 153 178 8 chr4 152721725 152722091 -49606256 + MSTA LTR MaLR 1 428 0 532 242 92 54 chr4 152722423 152722683 -49605664 - L1ME3A LINE L1 -2133 4273 4004 1437 284 79 14 chr4 152722729 152723593 -49604754 - L1ME3A LINE L1 -2487 3919 3000 544 294 78 34 chr4 152723943 152724467 -49603880 - L1ME3A LINE L1 -4621 1966 1420 429 275 81 87 chr4 152724498 152724688 -49603659 - L1ME3A LINE L1 -5177 1232 1043 1968 138 34 0 chr4 152724688 152724985 -49603362 - AluSx SINE Alu -1 311 5 429 275 81 87 chr4 152724985 152725092 -49603255 - L1ME3A LINE L1 -5366 1043 937 302 267 84 30 chr4 152725453 152725584 -49602763 - L1ME3A LINE L1 -5891 505 368 51 17 0 0 chr4 152725789 152725847 -49602500 + AT_rich Low_complexity Low_complexity 1 58 0 1962 104 50 4 chr4 152727388 152727502 -49600845 + AluSx SINE Alu 3 110 -202 243 0 0 0 chr4 152727502 152727529 -49600818 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1962 104 50 4 chr4 152727529 152727694 -49600653 + AluSx SINE Alu 110 295 -17 2059 137 0 0 chr4 152728231 152728523 -49599824 - AluSx SINE Alu -20 292 1 348 321 59 36 chr4 152730221 152730442 -49597905 + L1MEd LINE L1 637 862 -5257 280 156 22 0 chr4 152730558 152730603 -49597744 - MLT1C LTR MaLR 0 390 345 * 2064 174 26 16 chr4 152730592 152730977 -49597370 - MLT1C LTR MaLR -74 393 5 21 95 0 0 chr4 152731296 152731359 -49596988 + AT_rich Low_complexity Low_complexity 1 63 0 477 255 35 21 chr4 152731502 152731647 -49596700 + MIR SINE MIR 116 262 0 229 183 14 14 chr4 152732160 152732231 -49596116 + T-rich Low_complexity Low_complexity 3 73 0 202 289 0 40 chr4 152733465 152733541 -49594806 + CT-rich Low_complexity Low_complexity 3 75 0 606 63 0 0 chr4 152733584 152733663 -49594684 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 1507 192 65 0 chr4 152733679 152733854 -49594493 - AluJb SINE Alu -1 311 108 345 100 0 0 chr4 152733854 152733904 -49594443 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 1507 192 65 0 chr4 152733904 152734020 -49594327 - AluJb SINE Alu -204 108 1 210 219 0 0 chr4 152734164 152734205 -49594142 - MIR SINE MIR -2 260 220 2097 137 13 3 chr4 152734850 152735156 -49593191 + AluSx SINE Alu 1 309 -3 2114 119 0 7 chr4 152736047 152736341 -49592006 + AluSq SINE Alu 1 292 -21 2050 113 63 30 chr4 152736642 152737005 -49591342 + THE1C LTR MaLR 1 375 0 10110 110 33 41 chr4 152737005 152738598 -49589749 + THE1C-int LTR MaLR 1 1580 0 2003 141 53 14 chr4 152738598 152738959 -49589388 + THE1C LTR MaLR 1 375 0 29 47 0 0 chr4 152738990 152739033 -49589314 + AT_rich Low_complexity Low_complexity 1 43 0 252 0 0 0 chr4 152741409 152741437 -49586910 + (T)n Simple_repeat Simple_repeat 1 28 0 2654 52 0 0 chr4 152741483 152741793 -49586554 + AluY SINE Alu 1 310 -1 235 338 169 64 chr4 152741967 152742079 -49586268 - L3 LINE CR1 -3 1574 1475 1898 135 25 0 chr4 152742079 152742377 -49585970 - AluSx SINE Alu 0 307 3 235 338 169 64 chr4 152742377 152742654 -49585693 - L3 LINE CR1 -102 1475 1143 514 310 172 23 chr4 152742759 152743107 -49585240 - L2 LINE L2 -551 2763 2364 455 315 39 34 chr4 152743109 152743287 -49585060 - L3 LINE CR1 -1050 527 349 5927 162 29 16 chr4 152743489 152743968 -49584379 - L1MA5A LINE L1 -2 6937 6466 2095 126 7 0 chr4 152743968 152744261 -49584086 - AluSx SINE Alu -17 295 1 5927 162 29 16 chr4 152744261 152745620 -49582727 - L1MA5A LINE L1 -473 6466 5074 5524 223 31 7 chr4 152745622 152746723 -49581624 - L1MA5A LINE L1 -5655 1134 8 463 253 114 6 chr4 152747441 152747599 -49580748 - Charlie8 DNA MER1_type -2224 193 19 1538 201 11 0 chr4 152748415 152748693 -49579654 + AluJo SINE Alu 14 294 -18 189 107 0 0 chr4 152748857 152748885 -49579462 + (TTA)n Simple_repeat Simple_repeat 1 28 0 338 173 0 55 chr4 152749668 152749795 -49578552 + GA-rich Low_complexity Low_complexity 1 120 0 226 303 16 41 chr4 152750375 152750497 -49577850 - MLT-int LTR MaLR -1614 121 3 642 278 107 16 chr4 152750702 152750954 -49577393 - MLT1H LTR MaLR -272 277 3 860 279 84 82 chr4 152751040 152751414 -49576933 + LTR16C LTR ERVL 71 448 -43 2362 96 3 3 chr4 152751414 152751727 -49576620 - AluSp SINE Alu 0 313 1 860 279 84 82 chr4 152751727 152751768 -49576579 + LTR16C LTR ERVL 448 487 -4 2785 117 44 0 chr4 152751937 152752347 -49576000 - MSTC LTR MaLR 0 428 1 21 0 0 0 chr4 152752653 152752674 -49575673 + AT_rich Low_complexity Low_complexity 1 21 0 1631 196 21 0 chr4 152752679 152752970 -49575377 - AluJo SINE Alu -15 297 1 313 293 102 20 chr4 152753006 152753447 -49574900 - L1MDa LINE L1 -4735 2127 1193 24 0 0 0 chr4 152754243 152754267 -49574080 + AT_rich Low_complexity Low_complexity 1 24 0 802 308 57 24 chr4 152754373 152754756 -49573591 + MLT1K LTR MaLR 145 540 -48 400 267 67 33 chr4 152755183 152755363 -49572984 - MIR SINE MIR -71 191 6 22 0 0 0 chr4 152756884 152756906 -49571441 + AT_rich Low_complexity Low_complexity 1 22 0 1490 183 27 21 chr4 152757393 152757726 -49570621 + L1MA7 LINE L1 5955 6289 -2 25 0 0 0 chr4 152757726 152757751 -49570596 + AT_rich Low_complexity Low_complexity 1 25 0 182 281 134 0 chr4 152758105 152758187 -49570160 + MIR SINE MIR 97 189 -73 2187 234 52 2 chr4 152758201 152758812 -49569535 + L1MB5 LINE L1 4614 5255 -891 6399 65 36 3 chr4 152758815 152759682 -49568665 + L1PA4 LINE L1 5258 6152 -3 799 189 6 0 chr4 152759695 152759859 -49568488 - L1 LINE L1 -3806 2340 2176 3267 157 46 76 chr4 152759959 152760718 -49567629 + L1MB5 LINE L1 5439 6174 0 341 169 0 14 chr4 152760718 152760789 -49567558 + MIR SINE MIR 193 262 0 237 182 91 0 chr4 152761100 152761177 -49567170 - L1ME4a LINE L1 -31 6090 6007 250 216 0 0 chr4 152761589 152761640 -49566707 + L1MA3 LINE L1 6255 6305 0 2124 172 47 51 chr4 152761659 152762166 -49566181 - MLT1D LTR MaLR 0 505 1 4898 159 2 29 chr4 152763063 152763920 -49564427 - MSTA-int LTR MaLR -743 837 4 627 196 307 17 chr4 152763925 152764104 -49564243 - MSTA LTR MaLR -2 424 194 1033 156 133 9 chr4 152764240 152764451 -49563896 - MSTA LTR MaLR -191 237 1 1723 59 0 0 chr4 152765874 152766094 -49562253 + L1P LINE L1 4420 4639 -1507 596 118 21 0 chr4 152766271 152766364 -49561983 + L1MA9 LINE L1 6010 6104 -208 1912 155 23 26 chr4 152766364 152766433 -49561914 - MER47A DNA MER2_type -1957 366 298 1413 110 64 9 chr4 152766433 152766651 -49561696 + MER30 DNA MER1_type 1 230 0 1912 155 23 26 chr4 152766651 152766923 -49561424 - MER47A DNA MER2_type -2025 298 26 712 163 89 0 chr4 152766930 152767065 -49561282 + L1MA9 LINE L1 6100 6246 -66 2804 151 63 32 chr4 152767065 152767621 -49560726 - LTR36 LTR ERV1 0 611 39 11024 28 5 0 chr4 152767735 152769633 -49558714 - L1PA4 LINE L1 -168 5987 4082 210 276 43 110 chr4 152772278 152772441 -49555906 + MIR SINE MIR 24 175 -87 344 335 121 0 chr4 152773048 152773221 -49555126 - MIR SINE MIR -7 255 62 1530 210 10 42 chr4 152773385 152773771 -49554576 + MLT1A2 LTR MaLR 1 374 0 27 62 0 0 chr4 152774042 152774090 -49554257 + AT_rich Low_complexity Low_complexity 1 48 0 372 302 84 34 chr4 152774618 152774797 -49553550 + MIR SINE MIR 21 208 -54 404 225 75 75 chr4 152775092 152775279 -49553068 - L2 LINE L2 -1 3312 3126 657 239 139 0 chr4 152775367 152775568 -49552779 - LTR16A LTR ERVL -19 431 203 4427 116 1 25 chr4 152775747 152776435 -49551912 - L1PB3 LINE L1 0 6154 5483 793 129 0 8 chr4 152776435 152776559 -49551788 - L1P5 LINE L1 -589 5562 5440 772 77 10 0 chr4 152776556 152776660 -49551687 - L1P5 LINE L1 -492 5662 5558 * 2994 171 11 0 chr4 152776661 152777209 -49551138 - L1 LINE L1 -1955 4191 3638 571 129 21 0 chr4 152777578 152777671 -49550676 + L1MA9 LINE L1 6010 6104 -208 1925 152 23 26 chr4 152777671 152777740 -49550607 - MER47A DNA MER2_type -1957 366 298 1373 138 55 0 chr4 152777740 152777958 -49550389 + MER30 DNA MER1_type 1 230 0 1925 152 23 26 chr4 152777958 152778230 -49550117 - MER47A DNA MER2_type -2025 298 26 783 156 85 76 chr4 152778237 152778372 -49549975 + L1MA9 LINE L1 6100 6232 -80 2921 147 56 46 chr4 152778372 152778977 -49549370 - LTR36 LTR ERV1 0 611 1 783 156 85 76 chr4 152778977 152778994 -49549353 + L1MA9 LINE L1 6232 6247 -65 1348 123 48 40 chr4 152778994 152779221 -49549126 - MER30 DNA MER1_type -1 229 1 783 156 85 76 chr4 152779221 152779278 -49549069 + L1MA9 LINE L1 6247 6312 0 189 0 0 0 chr4 152779435 152779456 -49548891 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 507 73 0 0 chr4 152780845 152780913 -49547434 + (TA)n Simple_repeat Simple_repeat 2 69 0 648 0 0 0 chr4 152783572 152783644 -49544703 + (TTTTA)n Simple_repeat Simple_repeat 4 75 0 336 330 121 0 chr4 152784307 152784480 -49543867 - MIR SINE MIR -7 255 62 1538 212 10 42 chr4 152784644 152785030 -49543317 + MLT1A2 LTR MaLR 1 374 0 393 291 84 34 chr4 152785891 152786070 -49542277 + MIR SINE MIR 21 208 -54 365 234 75 75 chr4 152786364 152786552 -49541795 - L2 LINE L2 -1 3312 3125 1050 253 86 18 chr4 152786638 152786974 -49541373 - LTR16A LTR ERVL -19 431 73 288 0 0 0 chr4 152786989 152787021 -49541326 + (TG)n Simple_repeat Simple_repeat 2 33 0 256 267 86 35 chr4 152787025 152787141 -49541206 - L2 LINE L2 -226 3087 2966 205 211 0 0 chr4 152787261 152787299 -49541048 + (TAA)n Simple_repeat Simple_repeat 3 40 0 313 318 58 39 chr4 152787400 152787554 -49540793 - L2 LINE L2 0 3272 3116 892 241 118 47 chr4 152789127 152789508 -49538839 - L1MEc LINE L1 -5935 461 54 3777 102 18 9 chr4 152789764 152789961 -49538386 - MER41A LTR ERV1 0 554 360 4068 161 101 4 chr4 152789961 152790714 -49537633 + LTR1B LTR ERV1 1 826 0 3777 102 18 9 chr4 152790714 152791065 -49537282 - MER41A LTR ERV1 -194 360 1 241 244 49 0 chr4 152791082 152791164 -49537183 - L1M4 LINE L1 -3732 2414 2329 494 229 7 0 chr4 152791231 152791375 -49536972 - L1ME3 LINE L1 -32 6132 5985 258 191 0 0 chr4 152792022 152792064 -49536283 - MER20 DNA MER1_type -3 216 175 304 274 115 29 chr4 152793274 152793482 -49534865 - L1ME3 LINE L1 -508 5613 5388 2372 126 48 0 chr4 152793681 152794039 -49534308 - THE1C LTR MaLR 0 375 1 3180 91 7 11 chr4 152794043 152794496 -49533851 - THE1C-int LTR MaLR -4 1576 1126 436 185 25 0 chr4 152794493 152794574 -49533773 - THE1C-int LTR MaLR -1497 83 1 * 2304 140 11 19 chr4 152794574 152794952 -49533395 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr4 152796168 152796193 -49532154 + AT_rich Low_complexity Low_complexity 1 25 0 180 312 47 65 chr4 152796214 152796384 -49531963 - L2 LINE L2 -132 3181 3015 * 329 279 23 0 chr4 152796360 152796446 -49531901 - L2 LINE L2 -5 3308 3221 428 374 56 23 chr4 152796528 152796870 -49531477 - L2 LINE L2 -357 2957 2605 231 114 0 0 chr4 152797844 152797879 -49530468 + (TA)n Simple_repeat Simple_repeat 1 35 0 318 331 29 14 chr4 152797907 152798046 -49530301 - L1ME4a LINE L1 -1 6120 5980 296 173 123 12 chr4 152799318 152799399 -49528948 + MER51C LTR ERV1 340 429 -211 1963 130 3 23 chr4 152799443 152799751 -49528596 + AluSx SINE Alu 1 302 -10 1450 184 15 8 chr4 152799850 152800136 -49528211 - AluJb SINE Alu 0 312 36 308 327 65 0 chr4 152800790 152800897 -49527450 - MIR SINE MIR -79 129 16 292 385 41 0 chr4 152801062 152801184 -49527163 - MIR SINE MIR -65 143 17 1431 178 38 44 chr4 152801898 152802191 -49526156 - AluJo SINE Alu -21 291 1 24 0 0 0 chr4 152802745 152802769 -49525578 + AT_rich Low_complexity Low_complexity 1 24 0 332 360 51 21 chr4 152803647 152803883 -49524464 - MIR SINE MIR -14 248 6 232 327 27 27 chr4 152804358 152804468 -49523879 - MIR SINE MIR -36 226 117 393 199 54 157 chr4 152804508 152804674 -49523673 + MIR SINE MIR 114 262 0 742 87 0 19 chr4 152804856 152804960 -49523387 + AluY SINE Alu 194 295 -16 33 25 0 0 chr4 152805081 152805121 -49523226 + AT_rich Low_complexity Low_complexity 1 40 0 237 226 48 12 chr4 152805127 152805211 -49523136 - L1ME4a LINE L1 -11 6110 6024 218 289 100 0 chr4 152805338 152805428 -49522919 - L2 LINE L2 -244 3069 2971 297 331 58 39 chr4 152805697 152805851 -49522496 - L2 LINE L2 0 3272 3116 25 0 0 0 chr4 152806658 152806683 -49521664 + AT_rich Low_complexity Low_complexity 1 25 0 1050 230 118 35 chr4 152807543 152807917 -49520430 - L1MEc LINE L1 -5938 458 54 1237 115 48 14 chr4 152808176 152808368 -49519979 - MER41B LTR ERV1 0 635 437 1082 173 11 0 chr4 152808368 152808547 -49519800 + LTR1B LTR ERV1 1 181 -645 469 225 0 2 chr4 152808656 152808775 -49519572 - L1ME3 LINE L1 -25 6139 6023 180 0 0 0 chr4 152808905 152808925 -49519422 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 275 167 0 0 chr4 152809459 152809501 -49518846 - MER20 DNA MER1_type -3 216 175 320 269 115 29 chr4 152810699 152810907 -49517440 - L1ME LINE L1 -508 5613 5388 2372 126 48 0 chr4 152811106 152811464 -49516883 - THE1C LTR MaLR 0 375 1 3222 88 7 9 chr4 152811468 152811920 -49516427 - THE1C-int LTR MaLR -4 1576 1126 467 161 25 0 chr4 152811917 152811998 -49516349 - THE1C-int LTR MaLR -1497 83 1 * 1086 165 19 4 chr4 152811998 152812187 -49516160 - THE1C LTR MaLR 0 375 198 325 310 20 10 chr4 152813629 152813729 -49514618 - L2 LINE L2 -5 3308 3208 395 357 40 44 chr4 152813797 152814069 -49514278 - L2 LINE L2 -357 2957 2687 319 233 47 23 chr4 152814980 152815066 -49513281 - L1ME4a LINE L1 -16 6105 6018 264 182 104 13 chr4 152816363 152816440 -49511907 + MER51C LTR ERV1 346 429 -211 1952 121 3 33 chr4 152816484 152816790 -49511557 + AluSx SINE Alu 1 297 -15 1513 183 0 8 chr4 152816887 152817174 -49511173 - AluJb SINE Alu 0 312 36 27 0 0 0 chr4 152817186 152817213 -49511134 + AT_rich Low_complexity Low_complexity 1 27 0 290 321 75 0 chr4 152817810 152817916 -49510431 - MIR SINE MIR -79 129 16 292 385 41 0 chr4 152818083 152818205 -49510142 - MIR SINE MIR -65 143 17 299 337 0 12 chr4 152818970 152819053 -49509294 - MIR3 SINE MIR -124 84 3 431 277 31 0 chr4 152819796 152819926 -49508421 + MIR3 SINE MIR 34 167 -41 684 239 0 0 chr4 152819947 152820077 -49508270 - FLAM_A SINE Alu -3 130 1 391 338 101 10 chr4 152820153 152820360 -49507987 - MIR SINE MIR -5 257 32 202 176 0 0 chr4 152820940 152820974 -49507373 + MER5B DNA MER1_type 6 39 -139 938 221 50 95 chr4 152821480 152821728 -49506619 - MER58B DNA MER1_type -2079 341 112 2355 103 0 0 chr4 152821728 152822039 -49506308 - AluY SINE Alu 0 311 1 938 221 50 95 chr4 152822039 152822147 -49506200 - MER58B DNA MER1_type -2308 112 1 209 329 25 25 chr4 152822156 152822235 -49506112 + MER5B DNA MER1_type 88 166 -12 21435 40 1 0 chr4 152822301 152824964 -49503383 - L1PA3 LINE L1 -2574 3572 908 15385 32 1 0 chr4 152824964 152827582 -49500765 + L1PA3 LINE L1 3541 6155 0 1556 196 0 17 chr4 152827598 152827889 -49500458 + AluJo SINE Alu 6 291 -21 2110 101 3 7 chr4 152828511 152828797 -49499550 + AluSx SINE Alu 6 290 -22 400 337 91 0 chr4 152829671 152829858 -49498489 + MIR SINE MIR 2 205 -57 4075 192 40 42 chr4 152829859 152831417 -49496930 + L1MB5 LINE L1 4613 6174 0 344 169 0 14 chr4 152831417 152831488 -49496859 + MIR SINE MIR 193 262 0 246 171 92 0 chr4 152831799 152831875 -49496472 - L1ME4a LINE L1 -31 6090 6008 190 330 22 33 chr4 152832429 152832520 -49495827 - MIR3 SINE MIR -21 187 98 261 0 0 0 chr4 152832753 152832782 -49495565 + (A)n Simple_repeat Simple_repeat 1 29 0 345 247 23 17 chr4 152832922 152833096 -49495251 + CT-rich Low_complexity Low_complexity 3 177 0 224 222 123 74 chr4 152833098 152833179 -49495168 - L2 LINE L2 -6 3307 3223 443 315 49 31 chr4 152833387 152833673 -49494674 + L2 LINE L2 2894 3184 -129 243 88 0 0 chr4 152833950 152833984 -49494363 + (A)n Simple_repeat Simple_repeat 1 34 0 228 266 47 94 chr4 152834368 152834496 -49493851 - L3 LINE CR1 -258 1319 1198 27 49 0 0 chr4 152834634 152834675 -49493672 + AT_rich Low_complexity Low_complexity 1 41 0 458 323 58 35 chr4 152834723 152834949 -49493398 - MIR SINE MIR -26 236 6 1310 173 11 53 chr4 152835139 152835405 -49492942 - AluJo SINE Alu -57 255 1 317 364 51 21 chr4 152836862 152837098 -49491249 - MIR SINE MIR -14 248 6 248 228 53 181 chr4 152837506 152837677 -49490670 + MIR SINE MIR 114 262 0 854 66 0 0 chr4 152837862 152837968 -49490379 + AluY SINE Alu 197 302 -9 28 29 0 0 chr4 152838089 152838124 -49490223 + AT_rich Low_complexity Low_complexity 1 35 0 478 277 94 35 chr4 152838130 152838524 -49489823 - L1ME4a LINE L1 -11 6110 5694 316 211 92 35 chr4 152842139 152842281 -49486066 + L1ME4a LINE L1 5759 5908 -213 378 317 143 46 chr4 152842298 152842626 -49485721 + L2 LINE L2 2913 3272 0 190 330 22 33 chr4 152843039 152843130 -49485217 - MIR3 SINE MIR -21 187 98 217 317 195 0 chr4 152843195 152843277 -49485070 - L2 LINE L2 -22 3250 3153 254 253 0 45 chr4 152843514 152843692 -49484655 + CT-rich Low_complexity Low_complexity 3 172 0 228 173 136 86 chr4 152843694 152843775 -49484572 - L2 LINE L2 -6 3307 3223 429 307 52 38 chr4 152843984 152844271 -49484076 + L2 LINE L2 2894 3184 -129 246 62 0 0 chr4 152844549 152844581 -49483766 + (A)n Simple_repeat Simple_repeat 1 32 0 236 313 23 92 chr4 152844969 152845100 -49483247 - L3 LINE CR1 -258 1319 1198 27 29 0 0 chr4 152845242 152845276 -49483071 + AT_rich Low_complexity Low_complexity 1 34 0 397 358 49 26 chr4 152845324 152845550 -49482797 - MIR SINE MIR -26 236 6 25 83 0 0 chr4 152845841 152845901 -49482446 + AT_rich Low_complexity Low_complexity 1 60 0 26 64 0 0 chr4 152847779 152847826 -49480521 + AT_rich Low_complexity Low_complexity 1 47 0 308 204 92 35 chr4 152848008 152848150 -49480197 + L1ME4a LINE L1 5759 5908 -213 382 320 118 49 chr4 152848188 152848494 -49479853 + L2 LINE L2 2946 3272 0 23 0 0 0 chr4 152849749 152849772 -49478575 + AT_rich Low_complexity Low_complexity 1 23 0 218 56 28 0 chr4 152849842 152849878 -49478469 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 272 181 12 0 chr4 152853027 152853110 -49475237 + (CCG)n Simple_repeat Simple_repeat 2 85 0 297 269 56 76 chr4 152853330 152853579 -49474768 + Charlie8 DNA MER1_type 38 281 -2136 636 258 149 33 chr4 152853584 152853886 -49474461 - MLT1I LTR MaLR -14 395 59 466 335 101 68 chr4 152854304 152854641 -49473706 - L2 LINE L2 -8 3264 2917 180 176 0 0 chr4 152854895 152854929 -49473418 + (CATATA)n Simple_repeat Simple_repeat 1 34 0 2811 206 98 17 chr4 152854997 152855754 -49472593 + L1PBa LINE L1 6 823 -6040 7219 131 78 2 chr4 152855769 152856942 -49471405 + L1PBa LINE L1 1513 2817 -4045 223 26 0 53 chr4 152856942 152856980 -49471367 + (CAA)n Simple_repeat Simple_repeat 3 38 0 7219 131 78 2 chr4 152856980 152857240 -49471107 + L1PBa LINE L1 2817 3056 -3806 7496 34 0 0 chr4 152857253 152858523 -49469824 - L1PA4 LINE L1 -3 6152 4884 1256 166 37 12 chr4 152858524 152858765 -49469582 + MSTB LTR MaLR 180 426 0 24 32 0 0 chr4 152859370 152859401 -49468946 + AT_rich Low_complexity Low_complexity 1 31 0 268 291 85 53 chr4 152859702 152859984 -49468363 - L2 LINE L2 -1124 2190 1900 1126 294 159 2 chr4 152860351 152860887 -49467460 + L2 LINE L2 2693 3313 0 2480 65 3 21 chr4 152861453 152861789 -49466558 - L1PA7 LINE L1 0 6154 5825 212 191 24 0 chr4 152862866 152862908 -49465439 + (TG)n Simple_repeat Simple_repeat 2 44 0 266 257 148 30 chr4 152862996 152863097 -49465250 - MIR SINE MIR -77 185 73 3480 162 58 76 chr4 152863211 152863903 -49464444 - L1MB2 LINE L1 -7 6164 5462 1330 153 41 118 chr4 152863903 152864294 -49464053 + MLT1A1 LTR MaLR 1 361 -4 3480 162 58 76 chr4 152864294 152864349 -49463998 - L1MB2 LINE L1 -709 5462 5408 1724 121 0 8 chr4 152864349 152864598 -49463749 - AluSx SINE Alu -65 247 1 3480 162 58 76 chr4 152864598 152864815 -49463532 - L1MB2 LINE L1 -763 5408 5217 233 228 0 0 chr4 152865043 152865100 -49463247 + A-rich Low_complexity Low_complexity 1 57 0 1071 121 5 49 chr4 152865859 152866082 -49462265 + L1MA4 LINE L1 6087 6299 -1 1763 185 50 45 chr4 152866100 152866564 -49461783 - MLT1D LTR MaLR 0 505 40 397 239 77 0 chr4 152867916 152868033 -49460314 - MIR SINE MIR -114 148 23 310 83 100 17 chr4 152868412 152868472 -49459875 - L1MB2 LINE L1 -3 6168 6104 925 205 124 2 chr4 152868474 152868773 -49459574 - L1MB8 LINE L1 -170 6008 5668 1032 185 8 11 chr4 152868773 152869037 -49459310 + L1M3 LINE L1 5237 5499 -672 424 340 72 7 chr4 152869432 152869585 -49458762 - MER91A DNA MER1_type -1 195 33 1917 159 122 8 chr4 152869682 152870060 -49458287 - MSTA LTR MaLR 0 428 8 9157 148 18 21 chr4 152870067 152871649 -49456698 - MSTA-int LTR MaLR 0 1580 4 1591 149 232 11 chr4 152871654 152872003 -49456344 - MSTA LTR MaLR -2 426 1 7516 52 1 3 chr4 152873426 152875156 -49453191 + L1PA5 LINE L1 4420 6154 0 21 36 0 0 chr4 152875600 152875628 -49452719 + AT_rich Low_complexity Low_complexity 1 28 0 213 349 105 0 chr4 152875664 152875750 -49452597 - MIR3 SINE MIR -13 195 101 2822 3 0 0 chr4 152877132 152877437 -49450910 + AluYa5 SINE Alu 1 305 -6 488 278 92 17 chr4 152877510 152877683 -49450664 - MIR SINE MIR 0 262 77 1225 175 131 75 chr4 152878670 152879099 -49449248 + MSTB2 LTR MaLR 1 453 -4 1629 143 26 49 chr4 152879256 152879384 -49448963 - MER1B DNA MER1_type -2373 339 210 2432 84 0 0 chr4 152879384 152879692 -49448655 - AluY SINE Alu -3 308 1 1629 143 26 49 chr4 152879692 152879871 -49448476 - MER1B DNA MER1_type -2502 210 39 1768 243 28 24 chr4 152879895 152880438 -49447909 - L1ME3A LINE L1 -215 6766 6222 719 290 57 54 chr4 152880493 152880865 -49447482 - L1ME3A LINE L1 -854 6103 5727 1828 160 19 7 chr4 152880865 152881172 -49447175 - AluSx SINE Alu -1 311 1 719 290 57 54 chr4 152881172 152881502 -49446845 - L1ME3A LINE L1 -1230 5727 5399 659 276 96 15 chr4 152882198 152882676 -49445671 - L1ME3A LINE L1 -1632 5325 4809 1688 161 178 8 chr4 152882684 152883050 -49445297 + MSTA LTR MaLR 1 428 0 1568 271 108 20 chr4 152883381 152884553 -49443794 - L1ME3A LINE L1 -2133 4824 3551 332 272 64 68 chr4 152884585 152884850 -49443497 - L1ME3A LINE L1 -4258 2880 2617 218 104 0 62 chr4 152884860 152884908 -49443439 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 451 300 77 29 chr4 152884913 152885423 -49442924 - L1ME3A LINE L1 -4634 2504 1971 235 263 0 0 chr4 152885465 152885545 -49442802 - L1ME3A LINE L1 -5187 1672 1593 1518 132 9 0 chr4 152885655 152885883 -49442464 - AluSg/x SINE Alu 0 310 81 311 336 59 38 chr4 152885920 152886158 -49442189 + L1MEd LINE L1 620 862 -5257 275 196 0 0 chr4 152886281 152886327 -49442020 - MLT1C LTR MaLR 0 390 345 1788 191 27 16 chr4 152886329 152886701 -49441646 - MLT1C LTR MaLR -87 380 5 458 264 35 14 chr4 152887230 152887374 -49440973 + MIR SINE MIR 116 262 0 236 300 116 56 chr4 152887657 152887907 -49440440 - L2 LINE L2 -1870 1444 1180 197 136 0 23 chr4 152887915 152887959 -49440388 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 833 112 12 25 chr4 152889437 152889598 -49438749 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 1455 165 12 104 chr4 152889601 152889929 -49438418 - AluJb SINE Alu -4 298 1 207 219 0 0 chr4 152890073 152890114 -49438233 - MIR SINE MIR -2 260 220 2049 134 23 3 chr4 152890761 152891066 -49437281 + AluSx SINE Alu 1 311 -1 2162 112 0 7 chr4 152891955 152892249 -49436098 + AluSq SINE Alu 1 292 -21 1912 129 57 48 chr4 152892650 152893022 -49435325 + THE1C LTR MaLR 1 375 0 9504 111 31 44 chr4 152893022 152894615 -49433732 + THE1C-int LTR MaLR 1 1573 -7 2119 124 50 14 chr4 152894622 152894984 -49433363 + THE1C LTR MaLR 1 375 0 29 47 0 0 chr4 152895015 152895058 -49433289 + AT_rich Low_complexity Low_complexity 1 43 0 181 340 0 20 chr4 152895184 152895234 -49433113 - L2 LINE L2 -64 3208 3160 1896 155 0 36 chr4 152897469 152897778 -49430569 - AluSx SINE Alu -14 298 1 214 375 174 0 chr4 152897778 152898013 -49430334 - L3 LINE CR1 -105 1472 1197 512 310 172 23 chr4 152898158 152898506 -49429841 - L2 LINE L2 -551 2763 2364 478 303 39 34 chr4 152898508 152898686 -49429661 - L3 LINE CR1 -1050 527 349 5732 161 28 8 chr4 152898888 152899355 -49428992 - L1MA5A LINE L1 -2 6937 6481 2211 135 0 0 chr4 152899355 152899659 -49428688 - AluSx SINE Alu -8 304 1 5732 161 28 8 chr4 152899659 152901016 -49427331 - L1MA5A LINE L1 -458 6481 5074 5113 224 32 8 chr4 152901017 152902119 -49426228 - L1MA5A LINE L1 -5654 1135 8 361 255 83 14 chr4 152902745 152902890 -49425457 - Charlie8 DNA MER1_type -2224 193 39 1567 196 11 0 chr4 152903720 152903990 -49424357 + AluJo SINE Alu 14 286 -26 210 71 0 0 chr4 152904163 152904191 -49424156 + (TTA)n Simple_repeat Simple_repeat 1 28 0 371 320 0 0 chr4 152904951 152905051 -49423296 + GA-rich Low_complexity Low_complexity 1 100 0 235 278 0 41 chr4 152905639 152905736 -49422611 - MLT1H-int LTR MaLR -1640 95 3 605 289 218 11 chr4 152905753 152906193 -49422154 - MLT1H LTR MaLR -16 533 3 706 301 74 55 chr4 152906279 152906658 -49421689 + LTR16C LTR ERVL 71 456 -35 2346 83 6 13 chr4 152906664 152906978 -49421369 - AluSp SINE Alu -1 312 1 2702 129 44 0 chr4 152907188 152907598 -49420749 - MSTC LTR MaLR 0 428 1 21 0 0 0 chr4 152907900 152907921 -49420426 + AT_rich Low_complexity Low_complexity 1 21 0 1502 210 21 0 chr4 152907926 152908217 -49420130 - AluJo SINE Alu -15 297 1 289 289 86 7 chr4 152908254 152908406 -49419941 - L1MDb LINE L1 -4736 2126 1674 235 270 40 29 chr4 152908427 152908601 -49419746 - L1MDb LINE L1 -4961 1462 1287 24 0 0 0 chr4 152909491 152909515 -49418832 + AT_rich Low_complexity Low_complexity 1 24 0 649 309 53 21 chr4 152909621 152909961 -49418386 + MLT1K LTR MaLR 145 495 -93 21 36 0 0 chr4 152909961 152909989 -49418358 + AT_rich Low_complexity Low_complexity 1 28 0 381 272 67 33 chr4 152910428 152910608 -49417739 - MIR SINE MIR -71 191 6 1580 158 27 21 chr4 152912636 152912971 -49415376 + L1MA7 LINE L1 5953 6289 -2 25 0 0 0 chr4 152912971 152912996 -49415351 + AT_rich Low_complexity Low_complexity 1 25 0 707 124 0 3 chr4 152913473 152913484 -49414863 - L1ME LINE L1 -495 5659 5649 4544 123 7 4 chr4 152913484 152914197 -49414150 - L1PB3 LINE L1 0 6154 5440 707 124 0 3 chr4 152914197 152914299 -49414048 - L1ME LINE L1 -505 5649 5558 2867 169 9 2 chr4 152914300 152914850 -49413497 - L1PB3 LINE L1 -1955 4191 3638 2151 104 51 88 chr4 152916062 152916494 -49411853 + MSTA LTR MaLR 1 416 -12 233 93 61 45 chr4 152916529 152916785 -49411562 + (TTAA)n Simple_repeat Simple_repeat 1 260 0 280 296 91 37 chr4 152917127 152917370 -49410977 + L2 LINE L2 2804 3059 -213 343 309 95 80 chr4 152917550 152918020 -49410327 - L2 LINE L2 -44 3228 2730 22 0 0 0 chr4 152918317 152918339 -49410008 + AT_rich Low_complexity Low_complexity 1 22 0 328 354 62 7 chr4 152919938 152920082 -49408265 - MIR3 SINE MIR -25 183 32 214 206 131 65 chr4 152921169 152921276 -49407071 - MIR3 SINE MIR -91 117 4 301 337 0 12 chr4 152921636 152921719 -49406628 - MIR3 SINE MIR -124 84 3 440 297 62 0 chr4 152922462 152922607 -49405740 + MIR3 SINE MIR 34 187 -21 652 254 0 0 chr4 152922613 152922743 -49405604 - FLAM_A SINE Alu -12 130 1 404 339 109 5 chr4 152922819 152923011 -49405336 - MIR SINE MIR -5 257 46 203 176 0 0 chr4 152923607 152923641 -49404706 + MER5B DNA MER1_type 6 39 -139 920 201 46 120 chr4 152924149 152924408 -49403939 - MER58B DNA MER1_type -2079 341 115 2495 80 0 0 chr4 152924408 152924719 -49403628 - AluY SINE Alu 0 311 1 920 201 46 120 chr4 152924719 152924827 -49403520 - MER58B DNA MER1_type -2305 115 1 238 380 0 0 chr4 152924836 152924915 -49403432 + MER5B DNA MER1_type 88 166 -12 322 251 36 84 chr4 152924926 152924993 -49403354 - MER112 DNA MER1_type -34 226 157 1637 192 0 17 chr4 152924993 152925284 -49403063 + AluJo SINE Alu 6 291 -21 322 251 36 84 chr4 152925284 152925383 -49402964 - MER112 DNA MER1_type -103 157 68 2005 109 7 7 chr4 152925910 152926195 -49402152 + AluSx SINE Alu 6 290 -22 396 337 91 0 chr4 152927069 152927256 -49401091 + MIR SINE MIR 2 205 -57 634 261 37 0 chr4 152927257 152927475 -49400872 + L1M4 LINE L1 4613 4838 -1308 317 272 52 76 chr4 152927636 152927886 -49400461 + Charlie8 DNA MER1_type 38 281 -2136 297 253 53 32 chr4 152927891 152927986 -49400361 - MLT1I LTR MaLR -14 395 299 185 161 0 0 chr4 152928612 152928643 -49399704 + L3 LINE CR1 266 296 -1281 * 505 321 110 68 chr4 152928616 152928952 -49399395 - L2 LINE L2 -8 3264 2915 321 346 81 7 chr4 152929205 152929341 -49399006 + MER91A DNA MER1_type 50 195 -1 923 186 30 20 chr4 152929736 152929997 -49398350 - L1M3 LINE L1 -684 5499 5237 849 246 146 8 chr4 152930002 152930327 -49398020 + L1MB8 LINE L1 5673 6006 -172 272 177 48 0 chr4 152930300 152930362 -49397985 + L1MB2 LINE L1 6104 6168 -3 * 381 248 77 0 chr4 152930740 152930857 -49397490 + MIR SINE MIR 23 148 -114 2739 210 96 17 chr4 152931882 152932640 -49395707 + L1PBa LINE L1 6 823 -6040 7143 135 76 3 chr4 152932655 152933829 -49394518 + L1PBa LINE L1 1513 2813 -4049 181 0 0 65 chr4 152933829 152933860 -49394487 + (CAA)n Simple_repeat Simple_repeat 3 31 0 7143 135 76 3 chr4 152933860 152934124 -49394223 + L1PBa LINE L1 2813 3056 -3806 7483 37 0 0 chr4 152934136 152935403 -49392944 - L1PA4 LINE L1 -3 6152 4886 1212 174 37 12 chr4 152935406 152935647 -49392700 + MSTB LTR MaLR 180 426 0 22 0 0 0 chr4 152936262 152936284 -49392063 + AT_rich Low_complexity Low_complexity 1 22 0 238 305 85 53 chr4 152936585 152936867 -49391480 - L2 LINE L2 -1124 2190 1900 1538 271 108 22 chr4 152937542 152938715 -49389632 + L1M4 LINE L1 2740 4013 -2133 1669 158 178 8 chr4 152939050 152939416 -49388931 - MSTA LTR MaLR 0 428 1 685 272 90 22 chr4 152939424 152939913 -49388434 + L1M4 LINE L1 3998 4519 -1627 204 40 0 0 chr4 152940327 152940352 -49387995 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 926 273 128 14 chr4 152940714 152941059 -49387288 + L2 LINE L2 2929 3312 -1 2483 73 3 3 chr4 152941629 152941957 -49386390 - L1PA7 LINE L1 -2 6152 5825 180 0 0 0 chr4 152943028 152943048 -49385299 + (TC)n Simple_repeat Simple_repeat 2 21 0 183 80 0 0 chr4 152943057 152943082 -49385265 + (TG)n Simple_repeat Simple_repeat 1 25 0 276 293 123 9 chr4 152943181 152943287 -49385060 - MIR SINE MIR -77 185 68 3278 165 62 1 chr4 152943395 152944042 -49384305 - L1MB2 LINE L1 -7 6164 5479 26 0 0 0 chr4 152944050 152944076 -49384271 + AT_rich Low_complexity Low_complexity 1 26 0 1330 153 41 118 chr4 152944087 152944478 -49383869 + MLT1A1 LTR MaLR 1 361 -4 234 0 0 0 chr4 152944504 152944530 -49383817 + (T)n Simple_repeat Simple_repeat 1 26 0 1415 176 0 12 chr4 152944533 152944783 -49383564 - AluSx SINE Alu -65 247 1 719 154 95 0 chr4 152944798 152945000 -49383347 - L1MB2 LINE L1 -743 5403 5217 233 228 0 0 chr4 152945228 152945285 -49383062 + A-rich Low_complexity Low_complexity 1 57 0 207 152 0 0 chr4 153146235 153146281 -49182066 + (TA)n Simple_repeat Simple_repeat 2 47 0 1907 186 8 11 chr4 153146485 153146851 -49181496 - MLT1A1 LTR MaLR 0 365 1 5680 45 0 0 chr4 153147188 153147914 -49180433 + L1P LINE L1 3031 3756 -2390 1032 249 68 9 chr4 153147949 153148270 -49180077 + L1M4 LINE L1 3489 3828 -2318 615 253 16 68 chr4 153148379 153148628 -49179719 + MLT2C1 LTR ERVL 162 397 0 288 276 0 0 chr4 153148631 153148707 -49179640 - L2 LINE L2 -998 2316 2241 1279 326 21 98 chr4 153149523 153150096 -49178251 - LTR26B LTR ERV1 -2 529 1 231 298 203 24 chr4 153150553 153150762 -49177585 + MIR SINE MIR 16 262 0 252 0 0 0 chr4 153151047 153151075 -49177272 + (T)n Simple_repeat Simple_repeat 1 28 0 332 286 34 0 chr4 153151601 153151720 -49176627 - HAL1 LINE L1 -857 1650 1528 1593 115 0 0 chr4 153151775 153152010 -49176337 - L1PB1 LINE L1 -8 6143 5909 873 226 25 17 chr4 153152110 153152345 -49176002 + L1M4 LINE L1 3941 4177 -1969 972 268 56 20 chr4 153152582 153152888 -49175459 + MLT1H LTR MaLR 13 329 -220 450 198 94 9 chr4 153152950 153153056 -49175291 + MLT1H LTR MaLR 433 547 -2 324 0 0 0 chr4 153153227 153153263 -49175084 + (TG)n Simple_repeat Simple_repeat 2 37 0 1922 93 12 0 chr4 153153332 153153589 -49174758 + AluSc SINE Alu 47 306 -3 312 314 23 0 chr4 153153902 153153988 -49174359 - L2 LINE L2 0 3272 3185 252 0 0 0 chr4 153154735 153154763 -49173584 + (T)n Simple_repeat Simple_repeat 1 28 0 22 80 0 0 chr4 153154894 153154944 -49173403 + AT_rich Low_complexity Low_complexity 1 50 0 1686 207 13 27 chr4 153156104 153156480 -49171867 + MLT1A2 LTR MaLR 4 374 0 36 23 0 0 chr4 153156637 153156680 -49171667 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr4 153156846 153156881 -49171466 + AT_rich Low_complexity Low_complexity 1 35 0 1923 171 102 4 chr4 153156937 153157406 -49170941 + MER114 LTR ERV 21 535 -113 303 335 126 22 chr4 153160183 153160365 -49167982 + L3 LINE CR1 936 1136 -441 411 321 16 22 chr4 153160447 153160631 -49167716 + MER5A DNA MER1_type 7 189 0 185 171 0 98 chr4 153160741 153160782 -49167565 + L3 LINE CR1 1332 1368 -209 470 91 13 0 chr4 153161002 153161079 -49167268 + (TC)n Simple_repeat Simple_repeat 1 78 0 9623 222 39 110 chr4 153161317 153166044 -49162303 + L1P1 LINE L1 2829 7216 -377 1847 131 0 0 chr4 153166048 153166307 -49162040 + AluSg SINE Alu 1 259 -51 271 167 30 0 chr4 153166312 153166378 -49161969 + (TA)n Simple_repeat Simple_repeat 1 68 0 237 291 23 0 chr4 153166387 153166473 -49161874 - L1MC4 LINE L1 -1341 6701 6614 1879 268 49 54 chr4 153166575 153167598 -49160749 - L1PBa LINE L1 -5840 1023 6 916 250 6 54 chr4 153167663 153167995 -49160352 - L1MEd LINE L1 -4906 1213 898 3687 106 61 31 chr4 153168102 153169063 -49159284 - MER11A LTR ERVK 0 1071 1 269 194 0 16 chr4 153169187 153169249 -49159098 + CT-rich Low_complexity Low_complexity 2 62 0 234 237 0 52 chr4 153169312 153169409 -49158938 + T-rich Low_complexity Low_complexity 2 93 0 232 402 0 0 chr4 153169583 153169685 -49158662 - L1MEd LINE L1 -5769 350 249 202 393 59 48 chr4 153170167 153170521 -49157826 - L2 LINE L2 -342 2972 2615 214 292 34 22 chr4 153170655 153170744 -49157603 - L2 LINE L2 -926 2388 2299 646 323 67 60 chr4 153170891 153171325 -49157022 - L2 LINE L2 -4 3309 2873 216 0 0 0 chr4 153171648 153171672 -49156675 + (TG)n Simple_repeat Simple_repeat 2 25 0 29 60 0 0 chr4 153171766 153171816 -49156531 + AT_rich Low_complexity Low_complexity 1 50 0 799 236 64 25 chr4 153172378 153172658 -49155689 - LTR50 LTR ERVL -24 771 481 459 296 33 20 chr4 153172769 153172921 -49155426 - MERVL LTR ERVL -2445 3209 3056 1866 78 0 8 chr4 153173344 153173586 -49154761 - AluY SINE Alu -14 297 58 12910 218 29 61 chr4 153173758 153177142 -49151205 + L1PA15 LINE L1 1 3491 -3325 969 49 16 0 chr4 153177142 153177262 -49151085 + L1PA7 LINE L1 6031 6154 0 12910 218 29 61 chr4 153177262 153178842 -49149505 + L1PA15 LINE L1 3491 5120 -1696 1645 186 6 43 chr4 153178842 153179164 -49149183 + AluSx SINE Alu 3 312 0 12910 218 29 61 chr4 153179164 153180669 -49147678 + L1PA15 LINE L1 5120 6816 0 751 295 20 12 chr4 153180728 153180972 -49147375 - MLT2F LTR ERVL -1 662 417 857 183 147 141 chr4 153180980 153181482 -49146865 + MLT1D LTR MaLR 1 505 0 1216 273 51 16 chr4 153181495 153181865 -49146482 - MLT2F LTR ERVL -280 383 1 381 343 0 0 chr4 153181867 153182013 -49146334 - MERVL LTR ERVL -4459 1026 881 186 267 33 33 chr4 153182115 153182175 -49146172 - MER5A DNA MER1_type -86 103 44 29 0 0 25 chr4 153182577 153182594 -49145753 + AT_rich Low_complexity Low_complexity 1 17 -22 2163 119 6 6 chr4 153182594 153182905 -49145442 - AluSp SINE Alu -2 311 1 29 0 0 25 chr4 153182905 153182927 -49145420 + AT_rich Low_complexity Low_complexity 17 39 0 2511 163 12 5 chr4 153183164 153183581 -49144766 - MSTB LTR MaLR -6 420 1 281 244 26 0 chr4 153184104 153184182 -49144165 - MER116 DNA Mariner 0 80 1 6904 56 14 2 chr4 153184256 153185263 -49143084 + L1PA7 LINE L1 5132 6152 -2 1320 220 50 8 chr4 153185988 153186347 -49142000 - MER114 LTR ERV -3 645 272 362 216 45 0 chr4 153186404 153186492 -49141855 - MER114 LTR ERV -479 169 78 256 318 0 0 chr4 153186492 153186555 -49141792 + (TG)n Simple_repeat Simple_repeat 2 64 0 242 264 0 0 chr4 153187002 153187055 -49141292 - MER94 DNA DNA -81 53 1 242 359 15 23 chr4 153187076 153187207 -49141140 + L3 LINE CR1 1407 1536 -41 234 195 0 0 chr4 153187304 153187391 -49140956 + (TTA)n Simple_repeat Simple_repeat 1 87 0 780 159 24 6 chr4 153187414 153187584 -49140763 + GA-rich Low_complexity Low_complexity 3 175 0 563 296 56 24 chr4 153188121 153188371 -49139976 + MIR SINE MIR 5 262 0 213 196 0 0 chr4 153188377 153188433 -49139914 + (TTA)n Simple_repeat Simple_repeat 1 56 0 284 301 48 0 chr4 153188497 153188580 -49139767 - L2 LINE L2 0 3313 3227 265 425 37 15 chr4 153189208 153189342 -49139005 + L2 LINE L2 3133 3269 -3 195 42 0 0 chr4 153189344 153189368 -49138979 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr4 153190406 153190427 -49137920 + AT_rich Low_complexity Low_complexity 1 21 0 194 336 71 26 chr4 153190516 153190629 -49137718 - MIR SINE MIR -58 150 33 21 89 0 0 chr4 153190926 153190982 -49137365 + AT_rich Low_complexity Low_complexity 1 56 0 2005 137 3 0 chr4 153190995 153191287 -49137060 - AluSx SINE Alu -17 295 3 302 272 224 14 chr4 153191460 153191607 -49136740 + MIR SINE MIR 64 241 -21 256 261 75 55 chr4 153191731 153191984 -49136363 + L1ME4a LINE L1 5710 5967 -154 21 36 0 0 chr4 153192031 153192059 -49136288 + AT_rich Low_complexity Low_complexity 1 28 0 34 79 0 0 chr4 153192173 153192249 -49136098 + AT_rich Low_complexity Low_complexity 1 76 0 506 93 0 0 chr4 153193152 153193227 -49135120 + L1MB4 LINE L1 6105 6179 -1 1385 181 100 16 chr4 153193621 153193931 -49134416 + MER39 LTR ERV1 372 707 0 752 262 58 47 chr4 153193973 153194078 -49134269 + L2 LINE L2 2308 2410 -904 4127 102 38 16 chr4 153194078 153194708 -49133639 - LTR9B LTR ERV1 0 644 1 752 262 58 47 chr4 153194708 153194782 -49133565 + L2 LINE L2 2410 2482 -832 2080 218 78 8 chr4 153194782 153195254 -49133093 + MLT1D LTR MaLR 1 505 0 752 262 58 47 chr4 153195254 153195416 -49132931 + L2 LINE L2 2482 2654 -660 957 299 106 20 chr4 153195621 153196197 -49132150 + L2 LINE L2 2679 3312 -1 867 265 87 0 chr4 153196209 153196462 -49131885 - LTR16C LTR ERVL 0 491 217 186 255 64 0 chr4 153197478 153197525 -49130822 + L2 LINE L2 1 50 -3264 525 244 61 0 chr4 153198185 153198316 -49130031 - MIR3 SINE MIR -3 205 67 1742 191 64 16 chr4 153198973 153199349 -49128998 - MSTD LTR MaLR -2 394 1 27 0 0 0 chr4 153199649 153199676 -49128671 + AT_rich Low_complexity Low_complexity 1 27 0 221 180 20 0 chr4 153199875 153199925 -49128422 + (CAGT)n Simple_repeat Simple_repeat 4 54 0 617 265 0 13 chr4 153200054 153200205 -49128142 - MIR SINE MIR 0 262 114 34 42 0 0 chr4 153200521 153200569 -49127778 + AT_rich Low_complexity Low_complexity 1 48 0 252 0 0 0 chr4 153201763 153201791 -49126556 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr4 153202690 153202712 -49125635 + AT_rich Low_complexity Low_complexity 1 22 0 510 211 40 20 chr4 153202746 153202898 -49125449 + L1M4 LINE L1 4618 4772 -1374 540 264 179 9 chr4 153203120 153203332 -49125015 + MIR SINE MIR 5 252 -10 394 326 37 32 chr4 153204352 153204539 -49123808 + MIR3 SINE MIR 12 199 -9 1836 211 8 6 chr4 153204662 153205023 -49123324 + MLT1A1 LTR MaLR 4 365 0 34 0 0 0 chr4 153205621 153205655 -49122692 + AT_rich Low_complexity Low_complexity 1 34 0 615 286 56 24 chr4 153205818 153206031 -49122316 - MIR SINE MIR -14 248 29 263 349 36 0 chr4 153208823 153208906 -49119441 - L2 LINE L2 -2 3311 3226 1367 186 4 0 chr4 153209327 153209580 -49118767 - L1MD3 LINE L1 -12 7983 7730 234 330 12 20 chr4 153209913 153210023 -49118324 - MIR SINE MIR -65 143 50 2066 117 0 23 chr4 153213660 153213960 -49114387 - AluSx SINE Alu -19 293 1 216 0 0 0 chr4 153214112 153214136 -49114211 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 491 227 37 4 chr4 153214143 153214259 -49114088 + MIR SINE MIR 46 160 -63 199 434 56 21 chr4 153214262 153214405 -49113942 - L2 LINE L2 -36 3236 3089 234 341 34 0 chr4 153216134 153216222 -49112125 + L2 LINE L2 3223 3313 0 205 334 51 67 chr4 153216242 153216552 -49111795 - L2 LINE L2 -2401 913 608 1916 162 3 13 chr4 153216552 153216867 -49111480 + AluJb SINE Alu 1 312 0 205 334 51 67 chr4 153216867 153216912 -49111435 - L2 LINE L2 -2706 608 564 572 266 85 16 chr4 153217160 153217348 -49110999 + L2 LINE L2 3113 3313 0 779 209 45 0 chr4 153218238 153218415 -49109932 + MER53 DNA DNA 5 189 0 282 358 23 36 chr4 153219176 153219369 -49108978 + MIR SINE MIR 34 223 -39 220 148 59 20 chr4 153219893 153219994 -49108353 + (TA)n Simple_repeat Simple_repeat 2 106 0 341 293 63 91 chr4 153221502 153221820 -49106527 + MLT1J LTR MaLR 160 468 -43 740 40 10 0 chr4 153222101 153222201 -49106146 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 249 221 29 15 chr4 153222203 153222271 -49106076 + (TA)n Simple_repeat Simple_repeat 1 69 0 32 75 0 0 chr4 153222721 153222788 -49105559 + AT_rich Low_complexity Low_complexity 1 67 0 980 182 65 13 chr4 153222966 153223197 -49105150 + L1MB8 LINE L1 5936 6178 0 336 85 0 0 chr4 153225491 153225538 -49102809 - MADE1 DNA Mariner -32 48 2 2273 107 3 0 chr4 153226575 153226874 -49101473 + AluSq SINE Alu 7 306 -7 31 26 0 0 chr4 153227322 153227360 -49100987 + AT_rich Low_complexity Low_complexity 1 38 0 1374 138 8 49 chr4 153227633 153227879 -49100468 - AluJb SINE Alu -9 303 68 22 0 0 0 chr4 153232579 153232601 -49095746 + AT_rich Low_complexity Low_complexity 1 22 0 242 194 0 32 chr4 153235270 153235332 -49093015 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 35 63 0 0 chr4 153235879 153235942 -49092405 + AT_rich Low_complexity Low_complexity 1 63 0 33 56 0 0 chr4 153236950 153237004 -49091343 + AT_rich Low_complexity Low_complexity 1 54 0 260 397 0 0 chr4 153238501 153238574 -49089773 - L2 LINE L2 -44 3269 3197 195 186 0 0 chr4 153238615 153238658 -49089689 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2170 118 68 17 chr4 153238692 153239047 -49089300 - THE1C LTR MaLR 0 375 3 9972 123 30 18 chr4 153239049 153240607 -49087740 - THE1C-int LTR MaLR 0 1580 4 2274 113 18 12 chr4 153240607 153240944 -49087403 - THE1C LTR MaLR -36 339 1 364 83 0 0 chr4 153240985 153241033 -49087314 + MLT2B1 LTR ERVL 6 53 -462 1547 165 4 0 chr4 153241035 153241290 -49087057 - Tigger3(Golem) DNA MER2_type -3 3026 2771 882 179 0 21 chr4 153241286 153241431 -49086916 - Tigger3(Golem) DNA MER2_type -2886 143 2 * 1154 206 99 109 chr4 153241431 153241821 -49086526 + MLT2B1 LTR ERVL 51 437 -83 784 179 26 184 chr4 153241821 153242250 -49086097 - MLT1A1 LTR MaLR -3 362 2 1154 206 99 109 chr4 153242250 153242334 -49086013 + MLT2B1 LTR ERVL 437 520 0 24 0 0 0 chr4 153242376 153242400 -49085947 + AT_rich Low_complexity Low_complexity 1 24 0 22 80 0 0 chr4 153242553 153242603 -49085744 + AT_rich Low_complexity Low_complexity 1 50 0 870 333 127 5 chr4 153242673 153243286 -49085061 - L2 LINE L2 -733 2581 1894 2107 253 85 49 chr4 153243591 153245804 -49082543 + L1MEc LINE L1 8 2310 -3907 19702 44 10 1 chr4 153245804 153248786 -49079561 + L1P LINE L1 2 2997 -3149 2172 213 55 73 chr4 153250441 153250660 -49077687 + MLT1E1 LTR MaLR 32 253 -401 2577 121 57 0 chr4 153250660 153251064 -49077283 - MSTA LTR MaLR -1 427 1 2172 213 55 73 chr4 153251064 153251478 -49076869 + MLT1E1 LTR MaLR 253 654 0 266 291 139 0 chr4 153251627 153251713 -49076634 - MIR3 SINE MIR -34 174 77 624 156 26 104 chr4 153253461 153253653 -49074694 - MER53 DNA DNA -12 177 1 2164 62 10 14 chr4 153253663 153253953 -49074394 - L1PA10 LINE L1 -3 6165 5877 3163 181 28 31 chr4 153254228 153254377 -49073970 - L1MA9 LINE L1 -10 6302 6154 387 0 0 0 chr4 153254377 153254420 -49073927 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3163 181 28 31 chr4 153254420 153254976 -49073371 - L1MA9 LINE L1 -158 6154 5599 715 295 174 70 chr4 153255242 153256078 -49072269 - L2 LINE L2 -92 3221 2273 296 289 72 0 chr4 153256390 153256473 -49071874 + L2 LINE L2 3184 3272 0 342 277 92 14 chr4 153258145 153258286 -49070061 + L2 LINE L2 3161 3312 -1 394 330 107 69 chr4 153258652 153258943 -49069404 - L2 LINE L2 -1 3271 2970 734 199 32 65 chr4 153259135 153259266 -49069081 - MER3 DNA MER1_type 0 209 86 1937 129 3 10 chr4 153259266 153259569 -49068778 + AluSx SINE Alu 1 301 -11 734 199 32 65 chr4 153259569 153259653 -49068694 - MER3 DNA MER1_type -123 86 1 401 290 127 44 chr4 153259775 153260027 -49068320 - L2 LINE L2 -103 3210 2938 2417 75 3 0 chr4 153260125 153260420 -49067927 - AluSp SINE Alu -17 296 1 1752 162 21 49 chr4 153260456 153260784 -49067563 - MLT2C1 LTR ERVL -78 319 1 618 278 63 96 chr4 153261887 153262191 -49066156 - L1MEd LINE L1 -2236 3893 3580 2452 67 0 3 chr4 153262191 153262503 -49065844 - AluY SINE Alu 0 311 1 618 278 63 96 chr4 153262503 153263006 -49065341 - L1MEd LINE L1 -2549 3580 2864 1431 212 29 33 chr4 153263021 153263530 -49064817 + L1MA9 LINE L1 5612 6276 -36 402 309 101 59 chr4 153263559 153264206 -49064141 - L1MEd LINE L1 -3282 2847 2174 332 282 118 12 chr4 153264629 153264799 -49063548 - HAL1b LINE L1 -437 911 724 608 297 56 43 chr4 153264829 153265368 -49062979 - HAL1b LINE L1 -731 617 26 918 307 73 49 chr4 153265692 153266489 -49061858 - L1MEd LINE L1 -5015 1104 289 309 320 147 6 chr4 153266786 153266942 -49061405 - MIR SINE MIR -10 252 75 1844 105 4 4 chr4 153267456 153267733 -49060614 + L1M1 LINE L1 5412 5688 -615 279 139 0 0 chr4 153267733 153267776 -49060571 - MSTA LTR MaLR 0 428 386 31241 116 11 67 chr4 153267785 153273701 -49054646 + L1P3 LINE L1 12 5582 -572 462 127 0 25 chr4 153273801 153273880 -49054467 - L1P LINE L1 -6057 89 13 639 246 163 52 chr4 153273916 153274400 -49053947 - HAL1 LINE L1 -191 2316 1779 700 306 8 11 chr4 153274634 153274899 -49053448 + L1M4 LINE L1 3640 3903 -2243 6031 187 14 20 chr4 153275015 153276341 -49052006 - L1P LINE L1 -3864 2282 965 218 125 25 0 chr4 153276450 153276490 -49051857 + (TA)n Simple_repeat Simple_repeat 1 41 0 301 242 0 71 chr4 153276490 153276589 -49051758 + L1MC4 LINE L1 6612 6703 -1339 378 86 37 0 chr4 153276592 153276673 -49051674 + (TA)n Simple_repeat Simple_repeat 2 85 0 1798 159 107 8 chr4 153276679 153277044 -49051303 - MSTA LTR MaLR -27 401 1 8710 151 18 31 chr4 153277044 153278643 -49049704 - MSTA-int LTR MaLR 0 1580 3 2005 142 129 8 chr4 153278647 153279027 -49049320 - MSTA LTR MaLR -2 426 1 2812 186 22 7 chr4 153279028 153279631 -49048716 + L1MA4A LINE L1 5685 6296 -7 507 304 118 50 chr4 153280067 153280692 -49047655 - L1M4 LINE L1 -743 5403 4736 239 167 50 33 chr4 153280963 153281023 -49047324 - MER103 DNA DNA -19 147 87 2776 96 0 0 chr4 153281023 153281397 -49046950 + L1PA7 LINE L1 5773 6146 -8 21 0 0 0 chr4 153281619 153281640 -49046707 + AT_rich Low_complexity Low_complexity 1 21 0 13910 143 19 17 chr4 153281656 153283582 -49044765 - Tigger1 DNA MER2_type 0 2418 487 2103 138 0 0 chr4 153283582 153283878 -49044469 - AluSc SINE Alu -13 296 1 13910 143 19 17 chr4 153283878 153284363 -49043984 - Tigger1 DNA MER2_type -1931 487 4 361 370 87 0 chr4 153285694 153285878 -49042469 + MIR SINE MIR 53 252 -10 243 196 59 0 chr4 153289451 153289502 -49038845 + L2 LINE L2 3210 3263 -9 222 37 0 0 chr4 153293575 153293602 -49034745 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 818 183 0 6 chr4 153293786 153293966 -49034381 + GA-rich Low_complexity Low_complexity 1 179 0 348 284 92 52 chr4 153294758 153295008 -49033339 + L1M4 LINE L1 4060 4319 -1827 21 36 0 0 chr4 153295045 153295073 -49033274 + AT_rich Low_complexity Low_complexity 1 28 0 221 271 68 0 chr4 153295532 153295591 -49032756 - L2 LINE L2 -59 3213 3151 300 120 20 0 chr4 153297229 153297279 -49031068 + MER63 DNA MER1_type 3 53 -383 210 266 62 86 chr4 153298205 153298333 -49030014 - MIR SINE MIR -65 143 19 3677 240 35 35 chr4 153300875 153302777 -49025570 + L1MDb LINE L1 9 2027 -4379 1355 191 4 32 chr4 153302777 153303029 -49025318 + AluJb SINE Alu 46 290 -22 1400 215 61 17 chr4 153303044 153303707 -49024640 + L1MDb LINE L1 2072 2767 -3639 396 281 122 38 chr4 153304526 153304741 -49023606 - L1ME2 LINE L1 -216 5948 5752 2391 116 8 6 chr4 153304741 153305095 -49023252 - THE1A LTR MaLR 0 355 1 396 281 122 38 chr4 153305095 153305332 -49023015 - L1ME2 LINE L1 -412 5752 5467 290 303 76 47 chr4 153305636 153305760 -49022587 - L1MEd LINE L1 -5892 227 93 198 0 0 0 chr4 153305760 153305782 -49022565 + (TTG)n Simple_repeat Simple_repeat 2 23 0 290 303 76 47 chr4 153305782 153305868 -49022479 - L1MEd LINE L1 -6026 93 11 23 0 0 0 chr4 153305936 153305959 -49022388 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr4 153306356 153306387 -49021960 + AT_rich Low_complexity Low_complexity 1 31 0 198 333 122 0 chr4 153307078 153307168 -49021179 - L2 LINE L2 -5 3308 3208 7333 236 89 41 chr4 153307198 153310824 -49017523 + L1ME1 LINE L1 2215 6163 -3 639 229 72 99 chr4 153310854 153311186 -49017161 + HAL1 LINE L1 1175 1497 -1010 9023 199 68 12 chr4 153311223 153314022 -49014325 - L1MA8 LINE L1 -25 6266 3303 6201 158 8 22 chr4 153314020 153316081 -49012266 + L1MA4 LINE L1 4261 6291 -9 * 2971 211 16 32 chr4 153316095 153316803 -49011544 - L1 LINE L1 -1812 4334 3639 1472 233 170 26 chr4 153316805 153317534 -49010813 + HAL1 LINE L1 1503 2336 -171 37187 88 13 7 chr4 153317547 153323650 -49004697 + L1PA6 LINE L1 13 6154 0 221 83 28 0 chr4 153323657 153323693 -49004654 + (TAAAA)n Simple_repeat Simple_repeat 5 41 0 256 292 100 15 chr4 153323710 153323840 -49004507 + HAL1 LINE L1 2367 2507 0 632 276 117 0 chr4 153324024 153324220 -49004127 - MIR SINE MIR -21 241 23 280 322 72 5 chr4 153324964 153325213 -49003134 - L1MC4a LINE L1 -344 5834 5632 722 276 118 33 chr4 153325214 153325593 -49002754 + L2 LINE L2 2697 3103 -210 30 0 0 0 chr4 153325893 153325923 -49002424 + AT_rich Low_complexity Low_complexity 1 30 0 219 69 0 0 chr4 153327022 153327051 -49001296 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1998 146 10 0 chr4 153327053 153327347 -49001000 - AluSx SINE Alu -15 297 1 306 328 0 24 chr4 153327364 153327489 -49000858 + L1M4 LINE L1 5273 5394 -752 484 304 105 7 chr4 153329833 153330017 -48998330 + MIR SINE MIR 3 201 -61 208 258 48 16 chr4 153330024 153330086 -48998261 + MIR SINE MIR 168 231 -31 200 355 0 65 chr4 153331124 153331231 -48997116 + MIR SINE MIR 26 125 -83 261 302 53 142 chr4 153331578 153331803 -48996544 + L2 LINE L2 3034 3238 -34 246 32 0 0 chr4 153332029 153332060 -48996287 + (CA)n Simple_repeat Simple_repeat 2 32 0 14417 129 32 11 chr4 153334515 153335656 -48992691 + Tigger1 DNA MER2_type 1 1117 -1301 1918 137 3 10 chr4 153335656 153335791 -48992556 + AluSp SINE Alu 1 135 -178 2163 103 4 0 chr4 153335791 153336117 -48992230 + AluY SINE Alu 1 327 0 1918 137 3 10 chr4 153336117 153336294 -48992053 + AluSp SINE Alu 135 312 -1 14417 129 32 11 chr4 153336294 153337522 -48990825 + Tigger1 DNA MER2_type 1117 2418 0 326 296 56 0 chr4 153338244 153338369 -48989978 + MER58C DNA MER1_type 1 132 -83 255 203 0 0 chr4 153338375 153338434 -48989913 + GA-rich Low_complexity Low_complexity 1 59 0 291 156 203 0 chr4 153338452 153338516 -48989831 + MER58C DNA MER1_type 139 215 0 769 272 40 59 chr4 153338717 153339040 -48989307 + MLT1L LTR MaLR 69 385 -230 2169 113 0 3 chr4 153339398 153339700 -48988647 - AluSx SINE Alu -11 301 1 535 268 147 36 chr4 153340752 153341058 -48987289 - L2 LINE L2 -1 3312 2973 1285 231 60 42 chr4 153341604 153342058 -48986289 + MLT1C LTR MaLR 6 467 0 24 0 0 0 chr4 153343282 153343306 -48985041 + AT_rich Low_complexity Low_complexity 1 24 0 200 222 0 0 chr4 153344987 153345023 -48983324 + (CA)n Simple_repeat Simple_repeat 2 37 0 260 293 69 26 chr4 153345936 153346052 -48982295 - MER117 DNA MER1_type -76 121 1 316 296 93 19 chr4 153346054 153346162 -48982185 + L2 LINE L2 3150 3265 -7 21 0 0 0 chr4 153346288 153346309 -48982038 + AT_rich Low_complexity Low_complexity 1 21 0 2040 125 6 32 chr4 153347993 153348305 -48980042 + AluSx SINE Alu 1 304 -8 263 356 10 29 chr4 153350432 153350536 -48977811 + L2 LINE L2 3170 3271 -1 392 250 116 64 chr4 153352290 153352561 -48975786 + L1ME4a LINE L1 5483 5738 -383 315 71 0 0 chr4 153352561 153352603 -48975744 + (TG)n Simple_repeat Simple_repeat 2 43 0 392 250 116 64 chr4 153352603 153352893 -48975454 + L1ME4a LINE L1 5738 6121 0 289 338 11 29 chr4 153353033 153353207 -48975140 + MIR SINE MIR 45 212 -50 625 259 47 61 chr4 153355785 153356073 -48972274 + L1MC4a LINE L1 5299 5576 -595 452 280 77 15 chr4 153356922 153357201 -48971146 + L1MC4a LINE L1 5577 5787 -334 225 244 0 0 chr4 153358313 153358358 -48969989 - L2 LINE L2 -5 3267 3223 * 836 223 112 4 chr4 153358355 153358590 -48969757 - MIR SINE MIR -3 259 10 23767 38 1 0 chr4 153358602 153361529 -48966818 - L1P LINE L1 -1161 4985 2056 2001 81 0 4 chr4 153361528 153361801 -48966546 - L1P LINE L1 -4821 1325 1054 * 7287 39 6 0 chr4 153361801 153363001 -48965346 + L1PA4 LINE L1 4946 6150 -5 183 242 136 30 chr4 153363119 153363185 -48965162 + MIR SINE MIR 73 145 -63 22 0 0 0 chr4 153363283 153363305 -48965042 + AT_rich Low_complexity Low_complexity 1 22 0 490 179 132 28 chr4 153364408 153364514 -48963833 + AluJo SINE Alu 18 134 -178 25 0 0 0 chr4 153364521 153364546 -48963801 + AT_rich Low_complexity Low_complexity 1 25 0 212 194 0 0 chr4 153364801 153364837 -48963510 + A-rich Low_complexity Low_complexity 1 36 0 2518 159 26 7 chr4 153367017 153367452 -48960895 + MSTB1 LTR MaLR 1 432 0 1706 182 10 10 chr4 153367760 153368067 -48960280 + AluJb SINE Alu 4 310 -2 181 309 147 73 chr4 153368219 153368355 -48959992 + L2 LINE L2 3127 3272 0 1744 170 0 37 chr4 153368624 153368924 -48959423 + AluSx SINE Alu 2 290 -22 287 322 56 94 chr4 153368941 153369121 -48959226 + MIR SINE MIR 9 145 -63 1465 234 53 91 chr4 153369311 153369947 -48958400 + LTR9 LTR ERV1 1 612 0 447 113 0 0 chr4 153369964 153370035 -48958312 + (TG)n Simple_repeat Simple_repeat 2 72 0 497 156 52 10 chr4 153370593 153370689 -48957658 - MER63 DNA MER1_type -333 729 4 331 325 71 19 chr4 153371348 153371502 -48956845 + MIR SINE MIR 62 223 -39 225 132 0 0 chr4 153373972 153374010 -48954337 + (CACCAT)n Simple_repeat Simple_repeat 3 40 0 319 319 58 38 chr4 153374159 153374377 -48953970 + MIR SINE MIR 30 249 -13 1940 141 17 3 chr4 153374843 153375140 -48953207 + AluSx SINE Alu 1 301 -11 500 114 13 0 chr4 153375591 153375670 -48952677 + MADE1 DNA Mariner 1 80 0 26 64 0 0 chr4 153375674 153375721 -48952626 + AT_rich Low_complexity Low_complexity 1 47 0 652 258 69 77 chr4 153376551 153377217 -48951130 + L1MEc LINE L1 790 1451 -4945 2275 102 3 0 chr4 153377217 153377512 -48950835 + AluSq SINE Alu 1 296 -17 652 258 69 77 chr4 153377512 153377610 -48950737 + L1MEc LINE L1 1451 1548 -4848 7035 51 26 10 chr4 153377628 153378511 -48949836 + MER11D LTR ERVK 1 897 0 631 229 114 37 chr4 153378570 153378815 -48949532 - MSTC LTR MaLR -164 264 1 559 321 18 55 chr4 153378825 153379322 -48949025 + L1MEc LINE L1 1914 2346 -3869 1998 128 3 26 chr4 153379322 153379626 -48948721 - AluSx SINE Alu -15 297 1 559 321 18 55 chr4 153379626 153379855 -48948492 + L1MEc LINE L1 2346 2582 -3633 185 338 125 15 chr4 153380007 153380143 -48948204 - MIR SINE MIR -101 161 11 186 270 48 48 chr4 153380372 153380435 -48947912 - MER5C DNA MER1_type -238 86 24 201 230 322 0 chr4 153380620 153380707 -48947640 - L2 LINE L2 0 3313 3199 442 300 40 40 chr4 153381447 153381940 -48946407 - L1MCc LINE L1 -5857 566 30 1070 135 90 40 chr4 153382038 153382124 -48946223 + MER2 DNA MER2_type 1 81 -264 799 223 108 46 chr4 153382124 153382447 -48945900 - MER2 DNA MER2_type 0 344 2 1070 135 90 40 chr4 153382447 153382560 -48945787 + MER2 DNA MER2_type 81 210 -135 24 32 0 0 chr4 153382585 153382616 -48945731 + AT_rich Low_complexity Low_complexity 1 31 0 242 267 33 0 chr4 153382616 153382676 -48945671 + MER2 DNA MER2_type 280 341 -4 183 265 20 0 chr4 153383790 153383839 -48944508 + MER5C DNA MER1_type 7 56 -268 290 231 15 0 chr4 153384089 153384154 -48944193 + MER91 DNA MER1_type 1 66 -74 507 278 62 0 chr4 153384204 153384366 -48943981 + MIR SINE MIR 31 206 -56 2246 109 3 0 chr4 153384371 153384706 -48943641 - AluSx SINE Alu 0 336 1 2031 212 91 77 chr4 153384726 153385068 -48943279 + MLT1E2 LTR MaLR 1 356 -270 1510 113 31 0 chr4 153385068 153385290 -48943057 + MER30 DNA MER1_type 2 230 0 2031 212 91 77 chr4 153385290 153385555 -48942792 + MLT1E2 LTR MaLR 356 616 -10 405 305 15 46 chr4 153385601 153385732 -48942615 - L2 LINE L2 0 3313 3187 1504 196 38 35 chr4 153385802 153386144 -48942203 - MER2 DNA MER2_type 0 344 2 7631 86 6 21 chr4 153386166 153387253 -48941094 - MER11C LTR ERVK 0 1071 1 228 306 102 10 chr4 153387697 153387795 -48940552 - MIR SINE MIR -43 219 113 482 267 43 16 chr4 153388680 153388867 -48939480 + L1ME4a LINE L1 5739 5930 -191 352 284 66 51 chr4 153388915 153389112 -48939235 - MLT1K LTR MaLR -22 566 367 194 139 47 0 chr4 153389444 153389487 -48938860 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 203 0 0 36 chr4 153389527 153389555 -48938792 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2228 79 0 0 chr4 153389560 153389839 -48938508 - AluY SINE Alu -32 279 1 28 0 0 0 chr4 153390062 153390090 -48938257 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 153390225 153390246 -48938101 + AT_rich Low_complexity Low_complexity 1 21 0 283 300 0 0 chr4 153390920 153390980 -48937367 - MER102b DNA MER1_type -279 62 3 324 0 0 0 chr4 153391111 153391147 -48937200 + (TG)n Simple_repeat Simple_repeat 2 37 0 293 209 30 0 chr4 153391549 153391616 -48936731 - LTR33A LTR ERVL -1 522 454 229 247 174 100 chr4 153391748 153391938 -48936409 - MER102b DNA MER1_type -1 340 137 283 300 0 0 chr4 153391970 153392030 -48936317 - MER102b DNA MER1_type -279 62 3 324 0 0 0 chr4 153392161 153392197 -48936150 + (TG)n Simple_repeat Simple_repeat 2 37 0 429 290 175 14 chr4 153392599 153392885 -48935462 - LTR50 LTR ERVL -1 794 463 408 202 194 14 chr4 153392911 153393120 -48935227 - LTR50 LTR ERVL -531 242 1 467 242 110 39 chr4 153393127 153393309 -48935038 + MER112 DNA MER1_type 31 225 -35 234 0 0 0 chr4 153393883 153393909 -48934438 + (TA)n Simple_repeat Simple_repeat 2 27 0 324 192 0 0 chr4 153394130 153394182 -48934165 + Alu SINE Alu 1 52 -250 204 319 110 0 chr4 153394930 153395021 -48933326 + MIR SINE MIR 89 189 -73 191 333 42 0 chr4 153395162 153395234 -48933113 + MIR SINE MIR 36 110 -152 745 269 36 40 chr4 153395449 153395702 -48932645 + MIR SINE MIR 11 262 0 1295 267 35 49 chr4 153395986 153396477 -48931870 + L1ME3A LINE L1 5427 5910 -260 2487 122 18 5 chr4 153396495 153396880 -48931467 - Tigger2 DNA MER2_type -56 2662 2273 463 129 0 0 chr4 153396879 153396941 -48931406 + MER8 DNA MER2_type 178 239 0 * 263 163 0 0 chr4 153396943 153396992 -48931355 + L1ME3A LINE L1 5907 5955 -215 455 314 91 0 chr4 153397045 153397166 -48931181 + L2 LINE L2 3125 3256 -16 1526 199 16 13 chr4 153397399 153397710 -48930637 - AluJb SINE Alu 0 312 1 1847 204 8 3 chr4 153399537 153399899 -48928448 - MLT1A1 LTR MaLR -1 364 1 23 54 0 0 chr4 153402599 153402636 -48925711 + AT_rich Low_complexity Low_complexity 1 37 0 1691 198 14 25 chr4 153403287 153403609 -48924738 + MLT1A1 LTR MaLR 1 320 -45 2788 85 3 3 chr4 153403609 153403973 -48924374 + THE1B LTR MaLR 1 364 0 1691 198 14 25 chr4 153403973 153404013 -48924334 + MLT1A1 LTR MaLR 320 359 -6 296 307 191 11 chr4 153404873 153405062 -48923285 + L2 LINE L2 2621 2843 -471 22 56 0 0 chr4 153405240 153405276 -48923071 + AT_rich Low_complexity Low_complexity 1 36 0 29 0 0 0 chr4 153405570 153405599 -48922748 + AT_rich Low_complexity Low_complexity 1 29 0 261 270 16 0 chr4 153405652 153405715 -48922632 + L2 LINE L2 3209 3272 0 513 265 183 69 chr4 153405833 153405886 -48922461 - L2 LINE L2 -6 3307 3261 3273 132 93 43 chr4 153405886 153406552 -48921795 + LTR34 LTR ERV1 1 699 0 513 265 183 69 chr4 153406552 153407195 -48921152 - L2 LINE L2 -52 3261 2494 21 0 0 0 chr4 153407200 153407221 -48921126 + AT_rich Low_complexity Low_complexity 1 21 0 4359 136 48 80 chr4 153407309 153408242 -48920105 + MER4D LTR ERV1 1 903 0 216 0 0 0 chr4 153408277 153408301 -48920046 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 233 229 16 16 chr4 153409163 153409224 -48919123 + L1M4 LINE L1 4877 4937 -1209 418 311 98 18 chr4 153410183 153410408 -48917939 - MIR SINE MIR 0 262 20 226 189 0 135 chr4 153410604 153410678 -48917669 - L2 LINE L2 0 3313 3250 271 345 11 0 chr4 153412629 153412716 -48915631 + MIR3 SINE MIR 10 97 -111 1599 156 26 7 chr4 153413419 153413721 -48914626 + MSTC LTR MaLR 1 308 -120 623 190 0 35 chr4 153413771 153413913 -48914434 + MSTC LTR MaLR 292 428 0 2378 89 3 0 chr4 153415168 153415470 -48912877 + AluSp SINE Alu 1 303 -10 271 349 54 6 chr4 153415885 153416051 -48912296 - MIR SINE MIR 0 262 89 279 56 56 0 chr4 153416242 153416296 -48912051 + (TA)n Simple_repeat Simple_repeat 1 57 0 4141 154 16 31 chr4 153416836 153417633 -48910714 + LTR1 LTR ERV1 1 785 0 400 18 0 0 chr4 153419499 153419554 -48908793 + L1PA2 LINE L1 6101 6155 0 189 74 0 0 chr4 153419753 153419780 -48908567 + (CAGAGA)n Simple_repeat Simple_repeat 4 30 0 210 357 0 0 chr4 153419784 153419854 -48908493 + GA-rich Low_complexity Low_complexity 1 70 0 362 251 156 17 chr4 153421770 153421949 -48906398 - MIR SINE MIR -1 261 58 1113 134 0 28 chr4 153422047 153422226 -48906121 - AluSx SINE Alu -11 301 128 306 98 0 0 chr4 153422226 153422277 -48906070 + (TTATA)n Simple_repeat Simple_repeat 4 54 0 2470 89 0 0 chr4 153422280 153422617 -48905730 - L1PA8 LINE L1 -31 6141 5805 1054 96 0 7 chr4 153422618 153422754 -48905593 - AluSx SINE Alu -178 135 1 648 267 92 29 chr4 153423303 153423509 -48904838 - MIR SINE MIR -40 222 4 189 0 0 0 chr4 153423702 153423723 -48904624 + (TG)n Simple_repeat Simple_repeat 2 22 0 6770 63 138 81 chr4 153423726 153424918 -48903429 - MER11A LTR ERVK -4 1262 2 477 0 0 0 chr4 153424918 153424971 -48903376 + (TG)n Simple_repeat Simple_repeat 1 53 0 183 80 0 0 chr4 153424971 153424996 -48903351 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 456 240 116 14 chr4 153425839 153425985 -48902362 + MIR SINE MIR 39 199 -63 257 301 225 25 chr4 153426328 153426485 -48901862 - L2 LINE L2 -1 3312 3188 943 208 103 32 chr4 153426485 153426797 -48901550 - MER46C DNA MER2_type 0 338 5 257 301 225 25 chr4 153426797 153426915 -48901432 - L2 LINE L2 -125 3188 2982 322 340 7 50 chr4 153426947 153427088 -48901259 + L2 LINE L2 3137 3271 -1 2022 96 7 24 chr4 153427120 153427433 -48900914 - AluSc SINE Alu 0 309 1 188 263 38 50 chr4 153428043 153428123 -48900224 - MIR3 SINE MIR -6 202 124 224 306 39 139 chr4 153428931 153429189 -48899158 - L2 LINE L2 -37 3235 3004 251 284 46 18 chr4 153429467 153429576 -48898771 - MLT1L LTR MaLR -356 259 148 655 319 37 33 chr4 153429787 153430028 -48898319 - MIR SINE MIR 0 262 21 1788 171 3 31 chr4 153430076 153430397 -48897950 + AluJb SINE Alu 1 312 0 1691 187 0 7 chr4 153431340 153431640 -48896707 + AluJb SINE Alu 1 298 -14 1386 206 125 68 chr4 153431914 153432506 -48895841 - MLT1E2 LTR MaLR 0 626 1 271 298 91 8 chr4 153432945 153433066 -48895281 - MIR SINE MIR -97 165 35 198 184 26 0 chr4 153433068 153433106 -48895241 + MER5B DNA MER1_type 20 58 -120 292 375 57 28 chr4 153433299 153433475 -48894872 - MIR3 SINE MIR -24 184 4 23 33 0 0 chr4 153434342 153434372 -48893975 + AT_rich Low_complexity Low_complexity 1 30 0 442 316 69 28 chr4 153435220 153436014 -48892333 + L1ME1 LINE L1 4135 4958 -1188 1183 246 225 17 chr4 153436070 153436828 -48891519 - L2 LINE L2 0 3313 2405 22 35 0 0 chr4 153437009 153437038 -48891309 + AT_rich Low_complexity Low_complexity 1 29 0 414 274 95 64 chr4 153437046 153437408 -48890939 + L1ME1 LINE L1 5258 5662 -459 2219 118 0 7 chr4 153437408 153437714 -48890633 + AluSx SINE Alu 1 304 -8 414 274 95 64 chr4 153437714 153437970 -48890377 + L1ME1 LINE L1 5662 5909 -212 27 29 0 0 chr4 153437972 153438006 -48890341 + AT_rich Low_complexity Low_complexity 1 34 0 1614 177 32 11 chr4 153438010 153438292 -48890055 + AluJo SINE Alu 1 288 -24 1066 241 14 43 chr4 153438354 153438703 -48889644 - MER2 DNA MER2_type -5 340 2 478 170 0 30 chr4 153438705 153438805 -48889542 + L1MD2 LINE L1 5811 5907 -452 * 2743 187 26 38 chr4 153438782 153439202 -48889145 + L1PA15-16 LINE L1 1589 2027 -4119 2326 100 10 0 chr4 153439202 153439503 -48888844 + AluSp SINE Alu 1 304 -9 2743 187 26 38 chr4 153439503 153439802 -48888545 + L1PA15-16 LINE L1 2027 2328 -3818 731 190 95 65 chr4 153439870 153440102 -48888245 + MSTA LTR MaLR 190 428 0 890 220 0 0 chr4 153440103 153440303 -48888044 + L1PA15-16 LINE L1 2395 2594 -3552 2301 115 0 0 chr4 153440306 153440662 -48887685 - L1P LINE L1 -1200 4946 4591 1566 103 135 81 chr4 153440698 153441046 -48887301 + L1PA16 LINE L1 5791 6157 -9 207 0 0 0 chr4 153441062 153441085 -48887262 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2447 42 0 7 chr4 153441106 153441390 -48886957 - AluY SINE Alu -13 298 17 35 0 0 0 chr4 153441685 153441720 -48886627 + AT_rich Low_complexity Low_complexity 1 35 0 576 247 7 13 chr4 153441743 153441897 -48886450 + L1ME1 LINE L1 6010 6162 -4 891 294 16 47 chr4 153442591 153442975 -48885372 + L2 LINE L2 2926 3297 -16 770 170 24 0 chr4 153443272 153443433 -48884914 + L1PA15 LINE L1 5953 6128 -37 30 0 0 0 chr4 153443439 153443469 -48884878 + AT_rich Low_complexity Low_complexity 1 30 0 199 135 0 58 chr4 153443506 153443558 -48884789 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 189 0 0 0 chr4 153443864 153443885 -48884462 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 287 284 0 0 chr4 153444210 153444277 -48884070 - MIR SINE MIR -2 260 194 1814 190 66 5 chr4 153444369 153444748 -48883599 + MER39 LTR ERV1 306 707 0 718 294 16 0 chr4 153444748 153444935 -48883412 - MIR SINE MIR -66 196 7 214 333 49 20 chr4 153444947 153445049 -48883298 + L3 LINE CR1 940 1044 -533 334 387 35 13 chr4 153445071 153445301 -48883046 + L3 LINE CR1 1282 1516 -61 655 215 49 0 chr4 153445671 153445815 -48882532 + MER63 DNA MER1_type 1 777 -59 735 228 55 38 chr4 153445818 153446055 -48882292 - MLT1D LTR MaLR 0 505 265 1337 241 112 22 chr4 153446519 153446983 -48881364 - LTR40a LTR ERVL 0 519 14 28 0 0 0 chr4 153447087 153447115 -48881232 + AT_rich Low_complexity Low_complexity 1 28 0 2396 127 46 5 chr4 153447263 153447658 -48880689 + MSTA LTR MaLR 1 411 -17 1148 277 31 72 chr4 153448122 153448688 -48879659 + L2 LINE L2 2746 3307 -6 349 327 142 0 chr4 153448722 153448884 -48879463 + MIR SINE MIR 53 237 -25 1640 162 73 25 chr4 153452114 153452472 -48875875 + THE1C LTR MaLR 1 375 0 5328 136 5 15 chr4 153452864 153453734 -48874613 + L1PA16 LINE L1 5295 6155 -11 1623 141 16 49 chr4 153453951 153454255 -48874092 + MER49 LTR ERV1 1 294 -629 272 184 20 21 chr4 153454261 153454330 -48874017 + MER4E LTR ERV1 105 282 -590 1227 233 30 30 chr4 153454361 153454700 -48873647 + MER4D LTR ERV1 558 896 -7 244 312 37 18 chr4 153455794 153455903 -48872444 - MARNA DNA Mariner -373 213 103 2418 58 0 35 chr4 153455967 153456277 -48872070 + AluY SINE Alu 1 299 -12 523 136 64 71 chr4 153456361 153456501 -48871846 + L1ME4a LINE L1 5982 6120 -1 22 0 0 0 chr4 153456501 153456523 -48871824 + AT_rich Low_complexity Low_complexity 1 22 0 2789 188 37 29 chr4 153457979 153458608 -48869739 + LTR27 LTR ERV1 3 636 0 307 351 89 73 chr4 153459717 153459976 -48868371 - L2 LINE L2 -2 3270 3008 730 315 106 26 chr4 153459980 153460329 -48868018 + MLT1J LTR MaLR 17 393 -118 981 248 103 43 chr4 153460633 153461029 -48867318 + MLT1H LTR MaLR 130 549 0 383 209 82 45 chr4 153461063 153461173 -48867174 - L2 LINE L2 -2 3311 3198 1222 360 65 49 chr4 153461176 153461763 -48866584 - L2 LINE L2 -513 2801 2225 2042 146 0 0 chr4 153461763 153462065 -48866282 + AluSx SINE Alu 1 302 -10 1222 360 65 49 chr4 153462065 153462651 -48865696 - L2 LINE L2 -1089 2225 1609 908 220 114 45 chr4 153463168 153463432 -48864915 + MLT1E LTR MaLR 90 371 -222 383 313 45 55 chr4 153463447 153463648 -48864699 - L2 LINE L2 -1286 2028 1830 824 218 98 5 chr4 153463652 153463845 -48864502 + MLT1E LTR MaLR 383 593 0 501 266 109 5 chr4 153464217 153464401 -48863946 + MIR SINE MIR 42 244 -18 2177 118 0 0 chr4 153464550 153464838 -48863509 + AluSx SINE Alu 1 288 -24 189 0 0 0 chr4 153464853 153464874 -48863473 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 22 103 0 0 chr4 153467561 153467639 -48860708 + AT_rich Low_complexity Low_complexity 1 78 0 180 399 29 33 chr4 153468065 153468308 -48860039 - L2 LINE L2 -480 2834 2593 243 178 22 0 chr4 153468309 153468354 -48859993 + L1MC5 LINE L1 7181 7226 -735 433 208 135 36 chr4 153468494 153468686 -48859661 + L1MC5 LINE L1 7273 7483 -478 1918 149 0 19 chr4 153468695 153469011 -48859336 + AluSx SINE Alu 1 310 -2 26 0 0 0 chr4 153469011 153469037 -48859310 + AT_rich Low_complexity Low_complexity 1 26 0 339 300 36 14 chr4 153469245 153469385 -48858962 + L1MC5 LINE L1 7710 7852 -109 384 312 16 79 chr4 153469539 153469601 -48858746 - L2 LINE L2 -837 2477 2413 2164 121 7 0 chr4 153469601 153469899 -48858448 + AluSx SINE Alu 1 300 -12 384 312 16 79 chr4 153469899 153470025 -48858322 - L2 LINE L2 -901 2413 2301 415 362 24 75 chr4 153470271 153470342 -48858005 + HAL1 LINE L1 7 80 -2427 3169 196 108 5 chr4 153470342 153471006 -48857341 + MER44D DNA MER2_type 1 605 0 415 362 24 75 chr4 153471006 153471307 -48857040 + HAL1 LINE L1 80 360 -2147 2203 258 33 65 chr4 153471840 153472630 -48855717 + L1MEc LINE L1 34 798 -5598 1507 225 26 12 chr4 153472636 153472982 -48855365 - MLT1A1 LTR MaLR 0 365 15 1930 252 67 33 chr4 153472999 153473949 -48854398 + L1MEc LINE L1 802 1784 -4612 * 3247 246 92 18 chr4 153473936 153475722 -48852625 + L1MEc LINE L1 1627 3503 -2712 1089 238 74 41 chr4 153475725 153476090 -48852257 + LTR16A1 LTR ERVL 81 457 0 350 269 185 0 chr4 153476090 153476198 -48852149 + LTR50 LTR ERVL 144 271 -524 1563 188 97 41 chr4 153476198 153476570 -48851777 + MLT1C LTR MaLR 1 403 -64 2231 84 10 0 chr4 153476570 153476868 -48851479 - AluSp SINE Alu -12 301 1 1563 188 97 41 chr4 153476868 153476937 -48851410 + MLT1C LTR MaLR 403 467 0 547 232 272 8 chr4 153477009 153477263 -48851084 + LTR50 LTR ERVL 471 791 -4 266 362 0 11 chr4 153477266 153477360 -48850987 + L2 LINE L2 2755 2847 -467 * 488 313 143 15 chr4 153477334 153477599 -48850748 + L2 LINE L2 2988 3286 -27 1802 149 10 14 chr4 153477829 153478117 -48850230 - AluJo SINE Alu -25 287 1 497 314 125 18 chr4 153478722 153479002 -48849345 + L2 LINE L2 2995 3304 -9 511 311 82 22 chr4 153479347 153479530 -48848817 - MER91A DNA MER1_type -2 194 1 327 25 0 0 chr4 153481247 153481287 -48847060 + (TG)n Simple_repeat Simple_repeat 2 41 0 26 50 0 0 chr4 153482001 153482041 -48846306 + GC_rich Low_complexity Low_complexity 1 40 0 30 45 0 0 chr4 153482135 153482179 -48846168 + GC_rich Low_complexity Low_complexity 1 44 0 189 175 0 0 chr4 153482472 153482512 -48845835 + CT-rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4 153484952 153484973 -48843374 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 153485592 153485621 -48842726 + AT_rich Low_complexity Low_complexity 1 29 0 337 288 13 59 chr4 153489403 153489556 -48838791 - MIR SINE MIR -50 212 67 235 288 0 0 chr4 153491661 153491720 -48836627 + tRNA-Ile-ATT tRNA tRNA 4 62 -15 29 60 0 0 chr4 153493552 153493602 -48834745 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr4 153493943 153493964 -48834383 + AT_rich Low_complexity Low_complexity 1 21 0 1901 130 4 0 chr4 153494471 153494788 -48833559 - AluSx SINE Alu 0 312 22 22 0 0 0 chr4 153495985 153496007 -48832340 + AT_rich Low_complexity Low_complexity 1 22 0 231 276 129 67 chr4 153498198 153498408 -48829939 + L3b LINE CR1 1350 1572 -11 745 189 18 30 chr4 153499095 153499144 -48829203 + MER5B DNA MER1_type 17 65 -113 1965 143 0 27 chr4 153499144 153499445 -48828902 + AluSx SINE Alu 1 293 -19 745 189 18 30 chr4 153499445 153499559 -48828788 + MER5B DNA MER1_type 65 178 0 1756 136 62 7 chr4 153501225 153501498 -48826849 - AluSx SINE Alu -24 288 1 423 0 0 0 chr4 153502389 153502436 -48825911 + (TG)n Simple_repeat Simple_repeat 1 47 0 397 97 43 56 chr4 153502437 153502539 -48825808 - L1MA9 LINE L1 -12 6156 6060 460 256 90 0 chr4 153502616 153502772 -48825575 - MIR SINE MIR -91 171 2 551 230 12 62 chr4 153502883 153503044 -48825303 + MIR SINE MIR 16 168 -94 1602 184 11 4 chr4 153503219 153503496 -48824851 + AluJo SINE Alu 11 289 -23 189 0 0 0 chr4 153504140 153504161 -48824186 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2017 115 10 17 chr4 153504176 153504471 -48823876 + AluSx SINE Alu 1 293 -19 2213 102 0 0 chr4 153504623 153504918 -48823429 + AluSc SINE Alu 12 306 -3 35 0 0 0 chr4 153505143 153505178 -48823169 + AT_rich Low_complexity Low_complexity 1 35 0 2016 114 17 14 chr4 153506005 153506294 -48822053 + AluSc SINE Alu 1 290 -19 1957 129 18 0 chr4 153506326 153506612 -48821735 + AluSx SINE Alu 8 298 -14 289 28 0 0 chr4 153506628 153506664 -48821683 - MADE1 DNA Mariner 0 80 45 252 86 0 0 chr4 153506905 153506940 -48821407 + (A)n Simple_repeat Simple_repeat 1 35 0 184 357 0 29 chr4 153507786 153507856 -48820491 + MIR3 SINE MIR 106 173 -35 1965 138 0 3 chr4 153507859 153508148 -48820199 + AluSg SINE Alu 18 305 -5 556 194 64 158 chr4 153508577 153508828 -48819519 - L2 LINE L2 -378 2936 2722 2193 107 16 7 chr4 153508828 153509136 -48819211 - AluSx SINE Alu -1 311 1 556 194 64 158 chr4 153509136 153509214 -48819133 - L2 LINE L2 -592 2722 2638 437 313 69 0 chr4 153509203 153509363 -48818984 + MIR3 SINE MIR 22 192 -16 * 183 205 0 0 chr4 153511809 153511848 -48816499 + (TA)n Simple_repeat Simple_repeat 1 39 0 351 269 67 15 chr4 153512748 153512882 -48815465 - MLT1K LTR MaLR -437 151 11 586 285 88 7 chr4 153513463 153513794 -48814553 - MLT1K LTR MaLR -181 407 10 6695 56 17 3 chr4 153514531 153515860 -48812487 - L1PA7 LINE L1 0 6154 4806 440 227 123 45 chr4 153517386 153517540 -48810807 - MER46C DNA MER2_type -147 191 26 2187 112 3 3 chr4 153517558 153517862 -48810485 - AluSc SINE Alu -5 304 1 384 127 56 0 chr4 153518615 153518686 -48809661 + L1MC2 LINE L1 6258 6332 -12 22 35 0 0 chr4 153519446 153519475 -48808872 + AT_rich Low_complexity Low_complexity 1 29 0 1003 200 9 33 chr4 153519786 153519996 -48808351 + MER58A DNA MER1_type 17 221 -3 1443 44 0 102 chr4 153520084 153520290 -48808057 - AluY SINE Alu -126 185 1 444 256 72 8 chr4 153520955 153521080 -48807267 + MER94 DNA DNA 2 134 0 261 0 0 0 chr4 153523463 153523492 -48804855 + (T)n Simple_repeat Simple_repeat 1 29 0 423 280 38 30 chr4 153523618 153523750 -48804597 - MIR SINE MIR -77 185 53 2042 106 4 0 chr4 153525509 153525801 -48802546 - AluSx SINE Alu 0 312 20 23 0 0 0 chr4 153527388 153527411 -48800936 + AT_rich Low_complexity Low_complexity 1 23 0 375 270 60 74 chr4 153527804 153528019 -48800328 - MIR SINE MIR -30 232 21 252 250 135 95 chr4 153528158 153528306 -48800041 + L2 LINE L2 2926 3079 -193 505 272 149 22 chr4 153528442 153528670 -48799677 - MIR SINE MIR 0 262 6 452 333 15 26 chr4 153529202 153529397 -48798950 - L3b LINE CR1 -275 1308 1116 21 0 0 0 chr4 153531373 153531394 -48796953 + AT_rich Low_complexity Low_complexity 1 21 0 245 233 189 11 chr4 153531938 153532028 -48796319 - MER63 DNA MER1_type -329 733 2 595 306 16 16 chr4 153532351 153532544 -48795803 + MIR SINE MIR 57 249 -13 213 366 183 0 chr4 153532594 153532665 -48795682 - L2 LINE L2 -44 3228 3145 27 29 0 0 chr4 153533402 153533436 -48794911 + AT_rich Low_complexity Low_complexity 1 34 0 1455 147 40 2 chr4 153533989 153534262 -48794085 + MER7A DNA MER2_type 1 336 0 2203 213 108 91 chr4 153534698 153535465 -48792882 - MER21B LTR ERV1 -62 801 22 1809 192 65 44 chr4 153536094 153536589 -48791758 + MLT1D LTR MaLR 1 505 0 339 292 77 31 chr4 153537249 153537379 -48790968 + L2 LINE L2 3175 3310 -3 820 213 6 6 chr4 153537720 153537884 -48790463 + FRAM SINE Alu 1 164 -12 2229 89 10 0 chr4 153538647 153538939 -48789408 + AluSq SINE Alu 1 295 -18 200 283 67 0 chr4 153543072 153543132 -48785215 + MIR SINE MIR 86 149 -59 21 0 0 0 chr4 153543470 153543491 -48784856 + AT_rich Low_complexity Low_complexity 1 21 0 1275 210 114 0 chr4 153543493 153543755 -48784592 - AluJo SINE Alu -20 292 1 181 354 123 15 chr4 153544380 153544510 -48783837 + MIR SINE MIR 106 249 -13 1541 169 18 0 chr4 153545498 153545770 -48782577 - L1MC1 LINE L1 -23 6310 6034 27 29 0 0 chr4 153546251 153546285 -48782062 + AT_rich Low_complexity Low_complexity 1 34 0 1094 159 13 62 chr4 153546340 153546567 -48781780 + MER20 DNA MER1_type 1 216 -3 236 346 112 0 chr4 153546681 153546788 -48781559 - L2 LINE L2 -7 3265 3147 2100 74 3 0 chr4 153547035 153547320 -48781027 - L1PA8 LINE L1 0 6172 5887 207 0 0 0 chr4 153548598 153548621 -48779726 + (TG)n Simple_repeat Simple_repeat 1 23 0 922 248 102 0 chr4 153548812 153549038 -48779309 - MIR SINE MIR -11 251 3 24 0 0 0 chr4 153550401 153550425 -48777922 + AT_rich Low_complexity Low_complexity 1 24 0 2211 119 0 3 chr4 153552282 153552592 -48775755 + AluSq SINE Alu 5 313 0 22 70 0 0 chr4 153553230 153553273 -48775074 + AT_rich Low_complexity Low_complexity 1 43 0 287 113 19 0 chr4 153553447 153553500 -48774847 + CT-rich Low_complexity Low_complexity 1 54 0 1097 258 89 60 chr4 153553673 153554439 -48773908 - L2 LINE L2 -4 3309 2521 243 79 0 0 chr4 153556995 153557033 -48771314 + (CA)n Simple_repeat Simple_repeat 1 38 0 2269 97 0 7 chr4 153557330 153557629 -48770718 + AluSx SINE Alu 1 297 -15 2152 120 0 10 chr4 153558282 153558581 -48769766 + AluSx SINE Alu 1 296 -16 717 149 52 0 chr4 153560211 153560345 -48768002 - L1MA7 LINE L1 -9 6282 6142 189 0 0 0 chr4 153560360 153560381 -48767966 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 432 104 0 0 chr4 153560380 153560447 -48767900 + (TA)n Simple_repeat Simple_repeat 1 67 0 255 103 0 0 chr4 153561356 153561395 -48766952 + (TG)n Simple_repeat Simple_repeat 2 40 0 2208 88 0 7 chr4 153561395 153561680 -48766667 - AluSq SINE Alu -28 285 3 24 32 0 0 chr4 153562155 153562186 -48766161 + AT_rich Low_complexity Low_complexity 1 31 0 1277 256 62 8 chr4 153562782 153563137 -48765210 - MLT1A2 LTR MaLR 0 374 1 188 253 291 0 chr4 153563595 153563674 -48764673 + MIR3 SINE MIR 12 113 -95 281 206 304 11 chr4 153565196 153565288 -48763059 - MER5A DNA MER1_type -7 182 64 395 308 43 0 chr4 153566963 153567080 -48761267 - L2 LINE L2 -1 3312 3191 2177 133 0 0 chr4 153567123 153567431 -48760916 - AluSq SINE Alu -5 308 1 212 128 0 21 chr4 153569919 153569966 -48758381 + (TAAAAA)n Simple_repeat Simple_repeat 4 49 0 1977 141 3 0 chr4 153571848 153572146 -48756201 - AluSx SINE Alu -13 299 1 23 0 0 0 chr4 153573776 153573799 -48754548 + AT_rich Low_complexity Low_complexity 1 23 0 34 0 0 0 chr4 153574395 153574429 -48753918 + AT_rich Low_complexity Low_complexity 1 34 0 25 31 0 0 chr4 153576839 153576871 -48751476 + AT_rich Low_complexity Low_complexity 1 32 0 2210 105 10 13 chr4 153577080 153577393 -48750954 - AluSx SINE Alu 0 312 1 246 156 0 0 chr4 153577680 153577725 -48750622 + CT-rich Low_complexity Low_complexity 1 45 0 237 152 0 0 chr4 153577734 153577780 -48750567 - LTR66 LTR ERVL -171 439 394 210 71 0 0 chr4 153577782 153577810 -48750537 + (CATA)n Simple_repeat Simple_repeat 4 31 0 524 143 26 0 chr4 153578508 153578662 -48749685 + (TA)n Simple_repeat Simple_repeat 2 159 0 322 221 20 101 chr4 153578670 153578819 -48749528 - L1MC4 LINE L1 -1333 6709 6573 21 0 0 0 chr4 153579096 153579117 -48749230 + AT_rich Low_complexity Low_complexity 1 21 0 202 219 47 0 chr4 153579298 153579362 -48748985 + (TA)n Simple_repeat Simple_repeat 1 67 0 229 208 19 19 chr4 153580412 153580465 -48747882 - L2 LINE L2 0 3313 3261 257 290 24 16 chr4 153580612 153580736 -48747611 + (TA)n Simple_repeat Simple_repeat 1 125 0 23 78 0 0 chr4 153580994 153581045 -48747302 + AT_rich Low_complexity Low_complexity 1 51 0 518 263 51 6 chr4 153581880 153582055 -48746292 + LTR33A LTR ERVL 341 523 0 2069 113 13 26 chr4 153582104 153582415 -48745932 - AluSc SINE Alu 0 309 3 1879 104 45 4 chr4 153582416 153582684 -48745663 - AluSq SINE Alu -34 279 1 4820 16 2 2 chr4 153583270 153583829 -48744518 - L1PA2 LINE L1 0 6155 5597 3321 19 2 0 chr4 153583829 153584439 -48743908 + L1PA2 LINE L1 4997 5607 -548 220 283 8 92 chr4 153584748 153584868 -48743479 + MIR SINE MIR 32 141 -67 1758 157 35 67 chr4 153585480 153585881 -48742466 - MLT1B LTR MaLR -2 388 1 366 268 191 6 chr4 153585937 153586094 -48742253 - MER5A DNA MER1_type 0 189 4 4406 143 32 45 chr4 153586653 153587527 -48740820 - L1MC1 LINE L1 -1 6332 5470 1645 176 30 10 chr4 153587536 153587837 -48740510 + AluJo SINE Alu 1 307 -5 997 152 0 6 chr4 153588022 153588186 -48740161 + MER3 DNA MER1_type 1 163 -46 595 250 149 34 chr4 153588978 153589031 -48739316 - MIR SINE MIR 0 262 216 1922 208 42 20 chr4 153589031 153589483 -48738864 - LTR40b LTR ERVL 0 462 1 595 250 149 34 chr4 153589483 153589637 -48738710 - MIR SINE MIR -46 216 31 1618 185 46 8 chr4 153589637 153590005 -48738342 - Charlie5 DNA MER1_type 0 2624 2243 512 177 0 85 chr4 153590010 153590140 -48738207 - MER3 DNA MER1_type -85 124 53 580 274 86 51 chr4 153590356 153590590 -48737757 + MIR SINE MIR 21 262 0 180 325 158 18 chr4 153590869 153590983 -48737364 + MER5B DNA MER1_type 31 160 -18 * 382 274 10 10 chr4 153590900 153591002 -48737345 - MER5A DNA MER1_type -79 110 9 2621 42 0 0 chr4 153592153 153592463 -48735884 - AluY SINE Alu -1 310 1 261 229 29 9 chr4 153592751 153592856 -48735491 + GA-rich Low_complexity Low_complexity 3 109 0 9386 167 23 11 chr4 153593269 153595129 -48733218 + L1PB3 LINE L1 3238 5146 -1008 2218 92 6 25 chr4 153595129 153595444 -48732903 + AluY SINE Alu 1 309 -2 9386 167 23 11 chr4 153595444 153596451 -48731896 + L1PB3 LINE L1 5146 6140 -14 4089 139 2 0 chr4 153596451 153597028 -48731319 - LTR9 LTR ERV1 -33 579 2 5772 191 10 14 chr4 153597028 153598091 -48730256 + L1PA15 LINE L1 4083 5133 -1032 273 29 0 0 chr4 153598091 153598125 -48730222 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 5772 191 10 14 chr4 153598125 153599149 -48729198 + L1PA15 LINE L1 5133 6160 -5 14688 135 8 8 chr4 153599212 153601525 -48726822 - Tigger1 DNA MER2_type -105 2313 2 6417 88 2 11 chr4 153602317 153603688 -48724659 + L1PA13 LINE L1 4801 6162 -1 2169 130 3 10 chr4 153603897 153604205 -48724142 - AluSx SINE Alu -6 306 1 41751 44 1 1 chr4 153604270 153610418 -48717929 + L1PA3 LINE L1 12 6155 0 251 286 109 17 chr4 153610473 153610592 -48717755 - L2 LINE L2 -3 3310 3181 733 280 128 22 chr4 153610646 153611174 -48717173 + MLT1G LTR MaLR 1 537 -5 257 332 166 10 chr4 153611303 153611496 -48716851 - L2 LINE L2 -358 2956 2734 409 255 161 0 chr4 153612797 153612944 -48715403 - MER5A DNA MER1_type -6 183 13 300 184 0 0 chr4 153612944 153612993 -48715354 + MER5A DNA MER1_type 4 52 -137 2346 133 47 7 chr4 153613000 153613405 -48714942 - MSTA LTR MaLR -7 421 1 696 212 0 41 chr4 153613405 153613551 -48714796 + MER5A DNA MER1_type 47 186 -3 267 245 32 53 chr4 153614497 153614591 -48713756 - MIR SINE MIR -47 215 124 23 33 0 0 chr4 153615105 153615135 -48713212 + AT_rich Low_complexity Low_complexity 1 30 0 281 250 0 11 chr4 153615227 153615315 -48713032 + CT-rich Low_complexity Low_complexity 3 89 0 568 263 17 0 chr4 153615971 153616089 -48712258 - L2 LINE L2 -1 3271 3152 878 224 56 4 chr4 153616477 153616727 -48711620 + L1MD3 LINE L1 7733 7995 0 198 103 0 0 chr4 153617081 153617110 -48711237 + (CA)n Simple_repeat Simple_repeat 1 29 0 342 322 103 7 chr4 153617601 153617747 -48710600 - MIR3 SINE MIR -2 206 47 2365 167 53 28 chr4 153619250 153619795 -48708552 - L1MA7 LINE L1 -4 6287 5729 239 289 112 46 chr4 153619800 153619912 -48708435 + MIR3 SINE MIR 47 173 -35 4415 148 17 8 chr4 153619912 153620717 -48707630 + L1MA4 LINE L1 5488 6300 0 239 289 112 46 chr4 153620717 153620756 -48707591 + MIR3 SINE MIR 173 208 0 379 375 38 13 chr4 153621140 153621377 -48706970 - MIR SINE MIR -3 259 17 423 252 0 15 chr4 153624941 153625072 -48703275 + L1MB4 LINE L1 1706 1834 -4550 7018 171 17 35 chr4 153625112 153626277 -48702070 - L1PA13 LINE L1 -4 6159 5036 565 47 12 12 chr4 153626277 153626363 -48701984 + (TA)n Simple_repeat Simple_repeat 1 86 0 7018 171 17 35 chr4 153626363 153627469 -48700878 - L1PA13 LINE L1 -1127 5036 3911 39366 57 7 1 chr4 153627472 153632735 -48695612 + L1P LINE L1 11 5307 -839 1182 181 44 22 chr4 153632754 153633024 -48695323 + MSTA-int LTR MaLR 1305 1580 0 2182 174 62 0 chr4 153633024 153633427 -48694920 + MSTA LTR MaLR 1 428 0 578 266 49 14 chr4 153633428 153633714 -48694633 + L1MB4 LINE L1 3295 3590 -2792 25 0 0 0 chr4 153633714 153633739 -48694608 + AT_rich Low_complexity Low_complexity 1 25 0 14608 124 39 5 chr4 153633760 153636182 -48692165 - L1PBa LINE L1 -4356 2507 3 1710 236 71 2 chr4 153636187 153636708 -48691639 + L1MB4 LINE L1 3588 4144 -2238 1450 231 80 0 chr4 153636714 153637126 -48691221 + MLT2B1 LTR ERVL 5 449 -71 512 30 15 0 chr4 153637127 153637193 -48691154 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 687 220 40 22 chr4 153637328 153637551 -48690796 + L1MB4 LINE L1 5194 5420 -962 5501 169 30 5 chr4 153637551 153637912 -48690435 - L1PB3 LINE L1 0 6154 5803 717 73 0 0 chr4 153637912 153638008 -48690339 + (TA)n Simple_repeat Simple_repeat 1 96 0 5501 169 30 5 chr4 153638008 153639632 -48688715 - L1PB3 LINE L1 -351 5803 4125 1813 203 14 21 chr4 153639627 153639763 -48688584 + L1MB4 LINE L1 5405 5541 -879 * 7540 30 14 0 chr4 153639763 153640808 -48687539 - L1PA4 LINE L1 -4 6151 5104 1813 203 14 21 chr4 153640808 153641206 -48687141 + L1MB4 LINE L1 5541 5940 -480 226 297 14 0 chr4 153641422 153641496 -48686851 - MIR SINE MIR -154 108 34 1369 167 19 41 chr4 153641744 153641855 -48686492 + L1MB4 LINE L1 5923 6035 -381 237 33 0 0 chr4 153641855 153641885 -48686462 + (TG)n Simple_repeat Simple_repeat 1 30 0 1369 167 19 41 chr4 153641885 153642091 -48686256 + L1MB4 LINE L1 6035 6233 -183 8491 180 39 74 chr4 153642098 153644430 -48683917 + L1MA4A LINE L1 546 3253 -3956 6848 96 22 0 chr4 153644430 153645409 -48682938 + L1P3 LINE L1 1 1001 -5460 620 99 0 10 chr4 153645406 153645507 -48682840 + L1P LINE L1 4555 4654 -1492 * 9019 53 101 5 chr4 153645510 153646803 -48681544 + L1PA7 LINE L1 1 1416 -4730 6396 20 0 1 chr4 153646804 153647546 -48680801 + L1PA2 LINE L1 5414 6154 -1 * 6957 66 3 0 chr4 153647531 153649027 -48679320 + L1PA7 LINE L1 4625 6154 0 13387 171 35 12 chr4 153649048 153649473 -48678874 + L1MA4A LINE L1 3238 3652 -3713 2650 106 38 9 chr4 153649473 153649898 -48678449 - L1PA13 LINE L1 0 6163 5727 13387 171 35 12 chr4 153649898 153650292 -48678055 + L1MA4A LINE L1 3652 4036 -3329 2305 102 0 0 chr4 153650292 153650585 -48677762 + AluSc SINE Alu 1 293 -16 13387 171 35 12 chr4 153650585 153652961 -48675386 + L1MA4A LINE L1 4036 6540 -825 797 145 7 14 chr4 153652961 153653103 -48675244 + L1PB3 LINE L1 6011 6154 0 5151 120 39 6 chr4 153653103 153653944 -48674403 + L1MA4A LINE L1 5428 6298 -5 13387 171 35 12 chr4 153653103 153653867 -48674480 + L1MA4A LINE L1 6540 7285 -80 507 281 96 68 chr4 153653972 153654296 -48674051 - MLT1K LTR MaLR -169 419 87 538 279 132 60 chr4 153654421 153654786 -48673561 + LTR16C LTR ERVL 97 487 -4 2209 153 32 0 chr4 153655004 153655382 -48672965 - MLT1B LTR MaLR 0 390 1 918 148 13 0 chr4 153657232 153657381 -48670966 - MER20 DNA MER1_type -3 216 66 518 248 69 55 chr4 153657420 153657638 -48670709 + L1ME2 LINE L1 4112 4340 -1806 1683 133 0 12 chr4 153657638 153657894 -48670453 + AluSx SINE Alu 38 290 -22 518 248 69 55 chr4 153657894 153658079 -48670268 + L1ME2 LINE L1 4340 4521 -1625 972 187 114 0 chr4 153658111 153658277 -48670070 + AluJo SINE Alu 11 195 -117 463 228 79 37 chr4 153658291 153658416 -48669931 + L1ME2 LINE L1 4556 4695 -1451 2305 122 3 0 chr4 153658416 153658720 -48669627 + AluSx SINE Alu 1 305 -7 463 228 79 37 chr4 153658720 153658809 -48669538 + L1ME2 LINE L1 4695 4779 -1367 2226 130 12 0 chr4 153658935 153659281 -48669066 - L1PA15 LINE L1 -335 5830 5481 7438 27 5 9 chr4 153659281 153660657 -48667690 - L1PA3 LINE L1 -1 6154 4777 2135 19 0 0 chr4 153660657 153660916 -48667431 + L1PA3 LINE L1 4534 4792 -1354 1432 96 0 30 chr4 153660916 153661176 -48667171 - L1PA15 LINE L1 -677 5488 5236 1579 235 91 38 chr4 153661217 153662128 -48666219 + L1ME2 LINE L1 4864 5832 -330 794 233 53 0 chr4 153662131 153662320 -48666027 + MER63A DNA MER1_type 12 210 0 503 286 47 13 chr4 153662321 153662574 -48665773 + L1ME2 LINE L1 5823 6087 -79 923 43 0 0 chr4 153662609 153662725 -48665622 + L1PA4 LINE L1 6037 6152 -3 216 196 0 0 chr4 153662728 153662774 -48665573 + A-rich Low_complexity Low_complexity 1 46 0 610 311 88 6 chr4 153662872 153663190 -48665157 + HAL1 LINE L1 11 354 -2153 * 1466 266 124 49 chr4 153663188 153664169 -48664178 + HAL1 LINE L1 1444 2498 -9 2234 105 7 0 chr4 153664240 153664535 -48663812 + AluSq SINE Alu 1 297 -16 477 262 27 33 chr4 153664619 153664802 -48663545 + L1ME1 LINE L1 4828 5009 -1137 2013 222 2 47 chr4 153664908 153665188 -48663159 + L1ME1 LINE L1 5427 5674 -492 1697 165 8 0 chr4 153665188 153665499 -48662848 - AluJb SINE Alu 0 327 15 2013 222 2 47 chr4 153665499 153665753 -48662594 + L1ME1 LINE L1 5674 5938 -228 610 206 8 8 chr4 153665778 153665909 -48662438 + FLAM_A SINE Alu 6 136 -6 514 244 42 75 chr4 153665927 153666140 -48662207 + L1ME1 LINE L1 5951 6156 -10 667 239 93 28 chr4 153666154 153666476 -48661871 + L1MD3 LINE L1 7653 7995 0 361 320 54 45 chr4 153666694 153667047 -48661300 + HAL1 LINE L1 1296 1651 -856 918 318 113 12 chr4 153667343 153668035 -48660312 + L1MEc LINE L1 74 835 -5561 1239 169 139 54 chr4 153668035 153668367 -48659980 + MLT1A1 LTR MaLR 1 360 -5 304 244 77 0 chr4 153668369 153668447 -48659900 + L1MEc LINE L1 828 911 -5485 886 283 100 20 chr4 153668543 153669254 -48659093 + L1MEc LINE L1 1055 1822 -4574 794 235 68 26 chr4 153669827 153670050 -48658297 + MLT1H LTR MaLR 1 202 -349 2407 103 0 0 chr4 153670134 153670436 -48657911 + AluSp SINE Alu 1 302 -11 503 230 103 0 chr4 153670457 153670583 -48657764 - MIR SINE MIR -84 178 40 1615 171 35 14 chr4 153670629 153670915 -48657432 - AluJo SINE Alu -19 293 2 354 323 79 12 chr4 153670925 153671089 -48657258 + L1MC4a LINE L1 5781 5955 -1853 5039 175 49 20 chr4 153671633 153672873 -48655474 - L1MA9 LINE L1 -1 6311 5051 6721 154 14 28 chr4 153672911 153674162 -48654185 + L1P LINE L1 11 1243 -4903 4176 100 33 18 chr4 153674265 153675143 -48653204 + L1P2 LINE L1 4784 5684 -471 4432 177 41 15 chr4 153676111 153677066 -48651281 - L1PBa LINE L1 -5416 1447 468 23 103 0 0 chr4 153677880 153677909 -48650438 + AT_rich Low_complexity Low_complexity 1 29 0 4120 165 39 16 chr4 153678371 153679173 -48649174 - L1PBa LINE L1 -6039 824 5 2063 132 7 3 chr4 153680220 153680515 -48647832 + AluSx SINE Alu 1 296 -16 825 243 190 6 chr4 153680625 153681052 -48647295 + MER69 DNA AcHobo 2 568 -1958 4804 72 27 0 chr4 153681379 153682296 -48646051 - L1P3 LINE L1 -563 5591 4648 3306 49 28 4 chr4 153682297 153682763 -48645584 - L1PA2 LINE L1 -1 6154 5678 22 35 0 0 chr4 153683293 153683322 -48645025 + GC_rich Low_complexity Low_complexity 1 29 0 5046 116 6 14 chr4 153683718 153684572 -48643775 - L1PA7 LINE L1 -4 6150 5304 4855 94 5 20 chr4 153684959 153685257 -48643090 - L1PA6 LINE L1 -80 6074 5773 1060 58 0 0 chr4 153685257 153685395 -48642952 - L1PA4 LINE L1 0 6155 6018 4855 94 5 20 chr4 153685395 153685860 -48642487 - L1PA6 LINE L1 -381 5773 5322 826 226 38 19 chr4 153686165 153686426 -48641921 - MLT1B LTR MaLR -124 266 1 4782 196 26 71 chr4 153688672 153689960 -48638387 - L1M2 LINE L1 -4672 2177 949 1237 373 82 6 chr4 153690232 153690916 -48637431 - L2 LINE L2 -338 2976 2241 326 237 93 0 chr4 153691726 153691823 -48636524 - MLT1H LTR MaLR -16 533 428 767 298 48 12 chr4 153692378 153692626 -48635721 - MIR SINE MIR -4 258 2 445 270 15 20 chr4 153692644 153692844 -48635503 + L1ME3A LINE L1 3567 3765 -2381 1892 227 117 18 chr4 153692956 153693607 -48634740 + L1ME3A LINE L1 5374 6090 -80 223 319 14 14 chr4 153693759 153693831 -48634516 - L2 LINE L2 -18 3254 3183 21 0 0 0 chr4 153693873 153693894 -48634453 + AT_rich Low_complexity Low_complexity 1 21 0 200 317 106 10 chr4 153694243 153694347 -48634000 - MIR SINE MIR -65 143 30 863 215 27 73 chr4 153696029 153696483 -48631864 + L1ME3A LINE L1 5119 5551 -613 23 0 0 0 chr4 153696483 153696506 -48631841 + AT_rich Low_complexity Low_complexity 1 23 0 281 111 0 0 chr4 153696506 153696551 -48631796 - L1MA3 LINE L1 0 6305 6261 * 1823 216 75 30 chr4 153696550 153697099 -48631248 + L1ME3A LINE L1 5537 6060 -110 297 0 0 0 chr4 153697099 153697132 -48631215 + (TC)n Simple_repeat Simple_repeat 2 34 0 293 0 27 0 chr4 153697131 153697168 -48631179 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 1823 216 75 30 chr4 153697132 153697220 -48631127 + L1ME3A LINE L1 6060 6165 -5 838 200 29 0 chr4 153697358 153697528 -48630819 + L1PA15 LINE L1 5990 6164 -1 413 242 79 37 chr4 153697556 153697645 -48630702 - L1M4 LINE L1 -1367 4779 4695 2242 125 3 3 chr4 153697645 153697950 -48630397 - AluSx SINE Alu -7 305 1 413 242 79 37 chr4 153697950 153698075 -48630272 - L1M4 LINE L1 -1451 4695 4556 846 217 114 0 chr4 153698089 153698255 -48630092 - AluJb SINE Alu -117 195 11 478 259 69 54 chr4 153698285 153698472 -48629875 - L1M4 LINE L1 -1623 4523 4340 1663 137 0 12 chr4 153698472 153698728 -48629619 - AluSx SINE Alu -22 290 38 478 259 69 54 chr4 153698728 153698946 -48629401 - L1M4 LINE L1 -1806 4340 4112 918 148 13 0 chr4 153698985 153699134 -48629213 + MER20 DNA MER1_type 66 216 -3 2866 131 0 0 chr4 153701748 153702169 -48626178 + L1PA15-16 LINE L1 5 425 -6424 2940 125 2 2 chr4 153702173 153702638 -48625709 + L1PA16 LINE L1 5538 6002 -164 256 224 172 8 chr4 153702638 153702772 -48625575 - L1M4 LINE L1 -1321 4825 4670 732 245 0 27 chr4 153703226 153703414 -48624933 - MIR SINE MIR -46 216 34 2192 138 99 8 chr4 153704453 153704845 -48623502 + MSTA LTR MaLR 1 428 0 291 302 40 8 chr4 153705342 153705468 -48622879 + MERVL LTR ERVL 2867 2996 -2489 374 229 11 99 chr4 153705517 153705698 -48622649 - MLT1H LTR MaLR 0 549 269 579 215 62 15 chr4 153705918 153706048 -48622299 + MERVL LTR ERVL 3087 3222 -2542 599 251 35 35 chr4 153706348 153706547 -48621800 + MERVL LTR ERVL 4029 4227 -1537 5966 117 7 0 chr4 153706910 153708431 -48619916 + L1PA15 LINE L1 4660 6185 0 289 311 66 30 chr4 153708477 153708811 -48619536 + L1ME LINE L1 3357 3702 -2444 7065 56 2 26 chr4 153708868 153710419 -48617928 - L1PA7 LINE L1 -4 6150 4617 7069 107 25 16 chr4 153710419 153711480 -48616867 + MER11C LTR ERVK 1 1071 0 1649 81 0 0 chr4 153711482 153711705 -48616642 - L1PA7 LINE L1 -1526 4620 4398 3847 79 0 0 chr4 153711709 153712227 -48616120 + L1PA7 LINE L1 3850 4367 -1779 371 320 36 21 chr4 153712239 153712433 -48615914 + L1ME LINE L1 3759 3955 -2191 1946 234 99 42 chr4 153712565 153712962 -48615385 + HAL1 LINE L1 1709 2082 -425 2105 141 0 0 chr4 153712962 153713267 -48615080 + AluSq SINE Alu 1 305 -8 1946 234 99 42 chr4 153713267 153713625 -48614722 + HAL1 LINE L1 2082 2507 0 648 282 70 19 chr4 153713651 153713963 -48614384 + L1ME LINE L1 5482 5809 -312 2045 150 57 26 chr4 153714016 153714435 -48613912 - MLT1C LTR MaLR 0 467 36 596 230 59 0 chr4 153714944 153715079 -48613268 + FLAM_C SINE Alu 1 143 0 2393 137 39 18 chr4 153715259 153715650 -48612697 + L1MB3 LINE L1 5738 6140 -43 1678 116 58 65 chr4 153715650 153715944 -48612403 + AluSq SINE Alu 1 292 -21 2393 137 39 18 chr4 153715944 153715989 -48612358 + L1MB3 LINE L1 6140 6183 0 550 278 22 43 chr4 153717687 153717906 -48610441 + Charlie7 DNA MER1_type 58 271 -2341 911 268 112 27 chr4 153717906 153718316 -48610031 - MLT1J1 LTR MaLR -1 445 1 1918 314 72 66 chr4 153718330 153718969 -48609378 + Charlie7 DNA MER1_type 289 922 -1690 1858 145 31 0 chr4 153718969 153719258 -48609089 + AluSx SINE Alu 1 298 -14 1918 314 72 66 chr4 153719258 153719797 -48608550 + Charlie7 DNA MER1_type 922 1478 -1134 3934 158 12 17 chr4 153719797 153720520 -48607827 + L1MB2 LINE L1 5447 6166 -5 1918 314 72 66 chr4 153720520 153720606 -48607741 + Charlie7 DNA MER1_type 1478 1562 -1050 1675 229 90 46 chr4 153720600 153721402 -48606945 + Charlie7 DNA MER1_type 1700 2536 -76 * 1656 251 82 37 chr4 153722099 153722406 -48605941 + MLT1H LTR MaLR 1 342 -207 2325 84 0 0 chr4 153722406 153722690 -48605657 + AluSp SINE Alu 1 284 -29 1656 251 82 37 chr4 153722690 153722892 -48605455 + MLT1H LTR MaLR 342 533 -16 316 359 140 25 chr4 153723431 153723616 -48604731 - L2 LINE L2 -396 2918 2756 2407 48 6 16 chr4 153723616 153723928 -48604419 + AluY SINE Alu 1 309 -2 316 359 140 25 chr4 153723928 153724271 -48604076 - L2 LINE L2 -558 2756 2329 979 235 67 29 chr4 153725090 153725405 -48602942 + MER102a DNA MER1_type 1 327 -3 327 310 80 0 chr4 153728105 153728205 -48600142 - L2 LINE L2 -2 3270 3163 192 97 0 0 chr4 153728572 153728603 -48599744 + (CAT)n Simple_repeat Simple_repeat 2 32 0 4361 120 15 39 chr4 153729743 153730462 -48597885 + MER50 LTR ERV1 1 702 -32 453 228 70 18 chr4 153730479 153730593 -48597754 + MIR SINE MIR 136 255 -7 508 291 16 24 chr4 153731366 153731611 -48596736 - L1ME3A LINE L1 -217 5961 5723 2037 119 7 0 chr4 153731650 153731947 -48596400 - AluSg SINE Alu 0 299 1 2041 132 7 3 chr4 153732450 153732745 -48595602 + AluSx SINE Alu 1 296 -16 1064 239 333 5 chr4 153732855 153733282 -48595065 + MER69 DNA AcHobo 2 568 -1958 * 1277 206 149 15 chr4 153733280 153733736 -48594611 + MER69 DNA AcHobo 2010 2526 0 841 217 21 26 chr4 153734151 153734340 -48594007 - MER5A DNA MER1_type -1 188 1 397 300 0 0 chr4 153734424 153734534 -48593813 + HERVL LTR ERVL 511 620 -5034 303 272 70 9 chr4 153734637 153734751 -48593596 + HERVL LTR ERVL 826 946 -4818 234 318 134 6 chr4 153735290 153735469 -48592878 + LTR67 LTR ERVL 356 557 0 604 267 141 21 chr4 153735472 153736181 -48592166 - L1ME3A LINE L1 -448 5673 4881 21 36 0 0 chr4 153736181 153736209 -48592138 + AT_rich Low_complexity Low_complexity 1 28 0 2210 180 104 16 chr4 153736209 153736632 -48591715 - L1MA9 LINE L1 -38 6274 5797 234 0 0 0 chr4 153736632 153736658 -48591689 + (TG)n Simple_repeat Simple_repeat 1 26 0 2210 180 104 16 chr4 153736658 153736744 -48591603 - L1MA9 LINE L1 -515 5797 5720 306 210 168 14 chr4 153736802 153736945 -48591402 - L1ME3A LINE L1 -1312 4834 4670 728 245 0 27 chr4 153737399 153737587 -48590760 - MIR SINE MIR -46 216 34 542 299 34 47 chr4 153738167 153738401 -48589946 - MLT1I LTR MaLR -107 302 72 964 223 20 3 chr4 153738401 153738671 -48589676 + MER89 LTR ERV1 2 375 -184 * 1898 246 56 42 chr4 153738667 153739261 -48589086 - LTR31 LTR ERV1 -15 604 3 1185 132 10 25 chr4 153739308 153739512 -48588835 + MER89 LTR ERV1 359 559 0 4831 45 0 6 chr4 153739948 153740809 -48587538 + L1P1 LINE L1 4807 5659 -496 3380 203 21 59 chr4 153740966 153741861 -48586486 + L1MC4a LINE L1 6948 7808 0 33 25 0 0 chr4 153741886 153741926 -48586421 + AT_rich Low_complexity Low_complexity 1 40 0 2233 110 0 13 chr4 153741927 153742237 -48586110 - AluSc SINE Alu -2 307 2 245 344 60 20 chr4 153742823 153742974 -48585373 - L2 LINE L2 -1021 2293 2137 1729 177 10 7 chr4 153743570 153743864 -48584483 - AluJb SINE Alu -11 301 7 2231 85 3 36 chr4 153744128 153744434 -48583913 - AluSq SINE Alu -17 296 1 889 224 103 33 chr4 153745247 153745645 -48582702 - LTR37A LTR ERV1 0 426 1 248 367 167 7 chr4 153747143 153747293 -48581054 - L2 LINE L2 -6 3266 3093 189 348 14 0 chr4 153748231 153748300 -48580047 + MIR3 SINE MIR 105 174 -34 216 0 0 0 chr4 153749115 153749139 -48579208 + (TTG)n Simple_repeat Simple_repeat 2 25 0 241 320 160 0 chr4 153749283 153749358 -48578989 + MIR3 SINE MIR 116 202 -6 230 237 79 0 chr4 153749855 153749931 -48578416 + L1 LINE L1 2 83 -7085 1900 232 33 7 chr4 153750850 153751576 -48576771 + L1 LINE L1 1631 2395 -4703 1402 239 14 14 chr4 153751566 153751935 -48576412 + L1 LINE L1 2628 2996 -4172 * 1739 130 20 37 chr4 153751973 153752318 -48576029 + MER61C LTR ERV1 2 434 0 3461 160 92 77 chr4 153752318 153753145 -48575202 + MER61C-int LTR ERV1 2 840 -4377 5044 82 1 6 chr4 153753145 153753832 -48574515 + MER61C-int LTR ERV1 958 1641 -3576 3407 107 66 22 chr4 153753821 153754411 -48573936 + MER61C-int LTR ERV1 1983 2598 -2619 * 672 265 83 117 chr4 153754738 153755198 -48573149 - MLT1J LTR MaLR -49 462 19 408 297 101 0 chr4 153755219 153755357 -48572990 + Charlie8 DNA MER1_type 85 236 -2181 2088 118 0 20 chr4 153755360 153755664 -48572683 - AluSx SINE Alu -8 304 7 348 204 97 0 chr4 153755852 153755945 -48572402 - MER53 DNA DNA -87 102 1 236 329 7 57 chr4 153755946 153756086 -48572261 - L2 LINE L2 -820 2494 2362 358 314 89 52 chr4 153756093 153756589 -48571758 - L2 LINE L2 -1074 2240 1727 2685 36 0 0 chr4 153757653 153757959 -48570388 - AluY SINE Alu -4 307 2 840 251 78 16 chr4 153758053 153758308 -48570039 + L2 LINE L2 3043 3313 0 2247 178 69 58 chr4 153758715 153759146 -48569201 + L1M4c LINE L1 15 455 -5929 2204 111 0 29 chr4 153759146 153759453 -48568894 - AluSx SINE Alu -14 298 1 2247 178 69 58 chr4 153759453 153759543 -48568804 + L1M4c LINE L1 455 542 -5842 * 3932 197 55 41 chr4 153759539 153760165 -48568182 + L1 LINE L1 4518 5167 -2000 2296 113 7 0 chr4 153760165 153760474 -48567873 + AluSx SINE Alu 1 311 -1 3932 197 55 41 chr4 153760474 153760918 -48567429 + L1 LINE L1 5167 5603 -1564 4662 176 53 15 chr4 153760935 153761230 -48567117 + L1MA3 LINE L1 3153 3435 -4130 906 103 0 0 chr4 153761230 153761366 -48566981 + (GGAA)n Simple_repeat Simple_repeat 3 138 0 4662 176 53 15 chr4 153761366 153762453 -48565894 + L1MA3 LINE L1 3435 4588 -2977 19942 205 37 5 chr4 153762639 153768691 -48559656 + L1P4 LINE L1 4 6267 -552 4817 101 0 11 chr4 153768691 153769391 -48558956 + L1PA13 LINE L1 5463 6155 -8 11425 160 21 2 chr4 153769392 153769891 -48558456 + L1MA3 LINE L1 4577 5065 -2659 1929 155 121 16 chr4 153769891 153770278 -48558069 - MSTA LTR MaLR 0 428 1 11425 160 21 2 chr4 153770278 153772866 -48555481 + L1MA3 LINE L1 5065 7724 0 180 0 0 0 chr4 153772871 153772891 -48555456 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 212 313 15 0 chr4 153773462 153773529 -48554818 + L3b LINE CR1 1294 1361 -222 27 29 0 0 chr4 153773848 153773882 -48554465 + AT_rich Low_complexity Low_complexity 1 34 0 347 306 39 37 chr4 153774074 153774416 -48553931 - L1MDa LINE L1 -4550 1579 1321 527 254 77 44 chr4 153774451 153774840 -48553507 - L1MDa LINE L1 -4893 1226 825 2242 119 140 8 chr4 153775004 153775382 -48552965 + MSTA LTR MaLR 1 428 0 1745 142 11 3 chr4 153775382 153775696 -48552651 + MSTA-int LTR MaLR 1 310 -1270 318 328 119 61 chr4 153776264 153776538 -48551809 - L1MDa LINE L1 -5654 465 160 2446 196 15 11 chr4 153776538 153777003 -48551344 - MLT1C LTR MaLR 0 467 1 318 328 119 61 chr4 153777003 153777124 -48551223 - L1MDa LINE L1 -5959 160 47 594 239 41 75 chr4 153777301 153777357 -48550990 + L1MEd LINE L1 908 964 -5155 2577 191 34 8 chr4 153777357 153777864 -48550483 + MLT2B1 LTR ERVL 1 520 0 594 239 41 75 chr4 153777864 153778125 -48550222 + L1MEd LINE L1 964 1214 -4905 24 32 0 0 chr4 153778444 153778475 -48549872 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr4 153778587 153778629 -48549718 + AT_rich Low_complexity Low_complexity 1 42 0 1028 215 39 5 chr4 153779523 153779728 -48548619 - MER20 DNA MER1_type -5 214 3 4899 60 13 0 chr4 153780319 153780938 -48547409 + HERVL-A1 LTR ERVL 5028 5654 0 2951 96 18 29 chr4 153780938 153781387 -48546960 + MLT2A1 LTR ERVL 1 444 0 21 36 0 0 chr4 153781667 153781695 -48546652 + AT_rich Low_complexity Low_complexity 1 28 0 1348 155 24 73 chr4 153782501 153782939 -48545408 + MLT1D LTR MaLR 1 503 -2 22 35 0 0 chr4 153783746 153783775 -48544572 + AT_rich Low_complexity Low_complexity 1 29 0 1604 236 65 76 chr4 153783824 153784379 -48543968 + MLT1H LTR MaLR 1 549 0 2509 43 0 13 chr4 153784642 153784944 -48543403 + AluY SINE Alu 1 298 -13 2280 74 3 10 chr4 153785128 153785425 -48542922 + AluY SINE Alu 1 295 -16 262 360 0 0 chr4 153785536 153785636 -48542711 + L2 LINE L2 1344 1443 -1871 1533 178 129 9 chr4 153788128 153788454 -48539893 - MLT1A1 LTR MaLR 0 365 1 222 300 0 50 chr4 153788864 153788944 -48539403 - L2 LINE L2 0 3313 3238 355 347 106 44 chr4 153789178 153789584 -48538763 - L2 LINE L2 -497 2817 2387 1015 263 54 52 chr4 153790008 153790363 -48537984 - LTR40a LTR ERVL -33 486 128 1698 183 16 32 chr4 153790363 153790734 -48537613 - MLT1A1 LTR MaLR 0 365 1 1015 263 54 52 chr4 153790734 153790785 -48537562 - LTR40a LTR ERVL -391 128 79 876 319 104 34 chr4 153790846 153791589 -48536758 - L2 LINE L2 -932 2382 1588 1521 217 88 50 chr4 153791607 153792072 -48536275 - MLT1D LTR MaLR -2 503 21 602 194 208 7 chr4 153793353 153793497 -48534850 - MER5A DNA MER1_type -1 188 16 216 0 0 0 chr4 153793807 153793831 -48534516 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 180 0 0 0 chr4 153794145 153794165 -48534182 + (T)n Simple_repeat Simple_repeat 1 20 0 27 62 0 0 chr4 153794696 153794744 -48533603 + AT_rich Low_complexity Low_complexity 1 48 0 497 349 30 6 chr4 153795702 153795871 -48532476 + MER91A DNA MER1_type 1 173 -23 2363 96 0 3 chr4 153796024 153796337 -48532010 - AluSx SINE Alu 0 312 1 215 259 19 19 chr4 153796338 153796392 -48531955 + MER91A DNA MER1_type 143 196 0 716 307 110 10 chr4 153797186 153797495 -48530852 + MLT1I LTR MaLR 44 383 -26 1632 192 88 0 chr4 153798164 153798528 -48529819 - MSTD LTR MaLR 0 396 1 237 180 0 0 chr4 153798572 153798622 -48529725 + (TG)n Simple_repeat Simple_repeat 2 51 0 213 94 0 0 chr4 153798638 153798670 -48529677 + (GA)n Simple_repeat Simple_repeat 2 33 0 348 289 111 24 chr4 153798998 153799251 -48529096 + L1 LINE L1 4125 4399 -1747 7629 29 0 0 chr4 153799308 153800606 -48527741 - L1PA3 LINE L1 -3 6152 4855 1511 128 41 50 chr4 153800707 153801056 -48527291 + MER61C-int LTR ERV1 2892 5318 -945 27631 86 8 6 chr4 153801056 153805754 -48522593 - L1PA7 LINE L1 -1 6153 1447 5461 112 60 69 chr4 153805755 153805843 -48522504 + MER61C-int LTR ERV1 4239 4326 -891 2066 123 0 3 chr4 153805843 153806127 -48522220 - AluSg1 SINE Alu -26 283 1 5461 112 60 69 chr4 153806127 153807026 -48521321 + MER61C-int LTR ERV1 4326 5217 0 1549 167 13 54 chr4 153807026 153807380 -48520967 + MER61C LTR ERV1 1 431 -3 1047 145 0 124 chr4 153807505 153807739 -48520608 + AluJb SINE Alu 87 291 -21 5142 151 20 42 chr4 153807797 153808799 -48519548 + L1MA8 LINE L1 5290 6269 -22 7109 57 14 0 chr4 153809183 153810662 -48517685 + L1PA8 LINE L1 4679 6172 0 36 87 0 0 chr4 153811954 153812046 -48516301 + AT_rich Low_complexity Low_complexity 1 92 0 210 289 0 0 chr4 153812880 153812932 -48515415 + CT-rich Low_complexity Low_complexity 2 53 0 360 213 126 24 chr4 153813583 153813710 -48514637 + MIR SINE MIR 123 262 0 25 51 0 0 chr4 153814283 153814322 -48514025 + AT_rich Low_complexity Low_complexity 1 39 0 1187 285 118 51 chr4 153814763 153815448 -48512899 + L1ME3A LINE L1 1 731 -5388 204 310 116 47 chr4 153816135 153816264 -48512083 + L2 LINE L2 2476 2613 -701 222 197 16 66 chr4 153816270 153816331 -48512016 - L2 LINE L2 -5 3308 3251 215 362 17 26 chr4 153816476 153816592 -48511755 + L2 LINE L2 2736 2850 -464 4798 259 98 51 chr4 153816664 153817616 -48510731 + L1ME3A LINE L1 2173 3079 -3074 1942 170 6 3 chr4 153817616 153817963 -48510384 + L1PA16 LINE L1 5806 6153 -13 4798 259 98 51 chr4 153817963 153819892 -48508455 + L1ME3A LINE L1 3079 5264 -889 877 123 58 12 chr4 153819892 153820063 -48508284 - L1MA9 LINE L1 -1 6311 6133 4798 259 98 51 chr4 153820063 153820889 -48507458 + L1ME3A LINE L1 5264 6050 -103 33 0 0 0 chr4 153822903 153822936 -48505411 + AT_rich Low_complexity Low_complexity 1 33 0 1549 202 47 0 chr4 153822987 153823284 -48505063 + AluJo SINE Alu 1 311 -1 8606 122 21 1 chr4 153823546 153824135 -48504212 - L1PA11 LINE L1 -1 6173 5597 3734 73 18 0 chr4 153824135 153824639 -48503708 + LTR10D LTR ERV1 1 513 0 8606 122 21 1 chr4 153824639 153824960 -48503387 - L1PA11 LINE L1 -577 5597 5284 543 16 0 0 chr4 153824960 153825024 -48503323 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 8606 122 21 1 chr4 153825024 153826246 -48502101 - L1PA11 LINE L1 -890 5284 4004 1972 115 3 70 chr4 153826262 153826592 -48501755 - AluSg SINE Alu -2 308 1 501 240 116 0 chr4 153826603 153826732 -48501615 - MIR SINE MIR -14 248 105 470 270 93 77 chr4 153826735 153827099 -48501248 + MLT1L LTR MaLR 2 307 -204 2159 111 0 0 chr4 153827338 153827635 -48500712 + AluY SINE Alu 12 308 -3 191 374 91 10 chr4 153827639 153827738 -48500609 - L2 LINE L2 -12 3260 3154 1018 126 0 7 chr4 153827767 153827918 -48500429 + MER46A DNA MER2_type 1 150 -86 21 0 0 0 chr4 153827951 153827972 -48500375 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 153829337 153829358 -48498989 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 153829886 153829914 -48498433 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 153829986 153830016 -48498331 + AT_rich Low_complexity Low_complexity 1 30 0 5642 37 1 0 chr4 153830298 153830993 -48497354 - L1P LINE L1 -2096 4050 3355 7449 24 12 1 chr4 153830993 153832103 -48496244 + L1PA4 LINE L1 5030 6151 -4 187 263 13 53 chr4 153832226 153832302 -48496045 + L2 LINE L2 3177 3249 -64 1938 133 23 16 chr4 153832415 153832723 -48495624 - AluJo SINE Alu 0 312 3 2141 221 64 12 chr4 153833037 153833615 -48494732 - L1ME1 LINE L1 -4 6162 5555 5275 132 25 11 chr4 153833638 153834481 -48493866 + Tigger1 DNA MER2_type 30 884 -1534 3879 171 19 13 chr4 153834551 153834835 -48493512 + L1M3f LINE L1 16 297 -5031 2624 117 44 12 chr4 153834835 153835247 -48493100 - MSTB LTR MaLR -1 425 1 3879 171 19 13 chr4 153835247 153835650 -48492697 + L1M3f LINE L1 297 707 -4621 8772 132 45 21 chr4 153835658 153835723 -48492624 + Tigger1 DNA MER2_type 870 932 -1486 1357 126 50 22 chr4 153835723 153835822 -48492525 - MER30 DNA MER1_type 0 230 135 2324 76 7 10 chr4 153835822 153836124 -48492223 - AluY SINE Alu -10 301 1 1357 126 50 22 chr4 153836124 153836246 -48492101 - MER30 DNA MER1_type -95 135 3 8772 132 45 21 chr4 153836246 153837693 -48490654 + Tigger1 DNA MER2_type 932 2418 0 1199 231 26 0 chr4 153837694 153837996 -48490351 - L1ME1 LINE L1 -627 5539 5229 24 32 0 0 chr4 153839028 153839059 -48489288 + AT_rich Low_complexity Low_complexity 1 31 0 206 286 0 39 chr4 153840177 153840254 -48488093 - MIR SINE MIR 0 262 189 1210 283 22 40 chr4 153840388 153840833 -48487514 + L1M2 LINE L1 14 450 -6399 236 276 67 19 chr4 153840927 153841032 -48487315 + L1M2 LINE L1 662 771 -6078 19709 69 4 16 chr4 153841033 153843785 -48484562 + L1PA6 LINE L1 993 3709 -2437 7805 67 26 0 chr4 153843785 153845635 -48482712 + L1PA6 LINE L1 4291 6144 -10 462 65 0 0 chr4 153845652 153845714 -48482633 + (GGGA)n Simple_repeat Simple_repeat 3 64 0 189 0 0 0 chr4 153845721 153845742 -48482605 + (GAAAA)n Simple_repeat Simple_repeat 4 24 0 1236 150 39 13 chr4 153845744 153845978 -48482369 + L1MB2 LINE L1 5826 6065 -106 25 65 0 0 chr4 153847245 153847291 -48481056 + AT_rich Low_complexity Low_complexity 1 46 0 3725 131 16 36 chr4 153847311 153847952 -48480395 - L1PA15 LINE L1 -6 6159 5532 11287 186 22 59 chr4 153847957 153849568 -48478779 - L1PA15 LINE L1 -1161 4985 3419 575 184 0 0 chr4 153849568 153849666 -48478681 - AluSg/x SINE Alu -81 231 134 11287 186 22 59 chr4 153849666 153850729 -48477618 - L1PA15 LINE L1 -2727 3419 2318 254 200 143 0 chr4 153850792 153850862 -48477485 - L1PA15 LINE L1 -3839 2307 2228 297 91 0 0 chr4 153851032 153851076 -48477271 - MER116 DNA Mariner 0 80 37 207 333 115 30 chr4 153851137 153851371 -48476976 + L2 LINE L2 1890 2143 -1171 228 154 0 0 chr4 153851491 153851530 -48476817 + L1P LINE L1 11 49 -6097 22308 54 0 1 chr4 153851532 153855282 -48473065 + L1PA5 LINE L1 2432 6151 -3 2017 123 7 18 chr4 153855500 153855785 -48472562 + AluSx SINE Alu 3 284 -28 826 119 16 40 chr4 153855659 153855785 -48472562 + AluSg/x SINE Alu 160 337 0 496 0 0 0 chr4 153855785 153855840 -48472507 + (TAAAA)n Simple_repeat Simple_repeat 2 75 0 368 175 151 8 chr4 153856710 153856836 -48471511 - Charlie5 DNA MER1_type -72 2540 2397 237 259 50 28 chr4 153856878 153857074 -48471273 + L1ME LINE L1 751 994 -5150 * 1490 263 63 31 chr4 153857047 153857298 -48471049 + L1M4 LINE L1 3321 3563 -2517 2069 152 120 11 chr4 153857298 153857680 -48470667 + MSTA LTR MaLR 1 424 -4 1490 263 63 31 chr4 153857680 153858032 -48470315 + L1M4 LINE L1 3563 3943 -2137 11631 202 22 35 chr4 153858058 153860479 -48467868 + L1PB1 LINE L1 6 2455 -4412 11222 40 6 1 chr4 153860479 153862613 -48465734 + L1PA5 LINE L1 4013 6149 -5 11631 202 22 35 chr4 153862613 153862839 -48465508 + L1PB1 LINE L1 2455 2682 -4185 2008 123 3 38 chr4 153862839 153863155 -48465192 + AluSx SINE Alu 1 305 -7 11631 202 22 35 chr4 153863155 153867135 -48461212 + L1PB1 LINE L1 2682 6853 -14 1014 47 0 0 chr4 153867242 153867369 -48460978 - L1PA5 LINE L1 -12 6142 6016 651 268 30 5 chr4 153867383 153867581 -48460766 + L1ME3A LINE L1 5736 5938 -232 248 398 0 10 chr4 153867693 153867796 -48460551 + L2 LINE L2 2782 2883 -431 5580 122 30 5 chr4 153867911 153868774 -48459573 - Tigger1 DNA MER2_type -58 2360 1476 5590 134 57 17 chr4 153868874 153869826 -48458521 - Tigger1 DNA MER2_type -1428 990 1 291 295 116 44 chr4 153869828 153870079 -48458268 + HAL1 LINE L1 358 626 -1881 707 269 56 46 chr4 153870219 153870524 -48457823 - L2 LINE L2 -8 3305 2998 2493 222 111 50 chr4 153870527 153870892 -48457455 + HAL1 LINE L1 735 1076 -1431 525 104 0 0 chr4 153870892 153870969 -48457378 + (TA)n Simple_repeat Simple_repeat 1 77 0 2366 112 0 0 chr4 153870972 153871284 -48457063 - AluSx SINE Alu 0 312 1 2493 222 111 50 chr4 153871284 153871957 -48456390 + HAL1 LINE L1 1077 1841 -666 425 216 10 10 chr4 153871957 153872059 -48456288 - LTR16B LTR ERVL -17 447 346 2740 110 32 16 chr4 153872070 153872507 -48455840 + MLT2A1 LTR ERVL 1 444 0 44186 68 11 3 chr4 153872509 153878121 -48450226 + HERVL-A1-A1 LTR ERVL 3 5654 0 2775 103 20 8 chr4 153878121 153878520 -48449827 + MLT2A1 LTR ERVL 1 404 -40 297 0 0 0 chr4 153878525 153878558 -48449789 + (TG)n Simple_repeat Simple_repeat 2 34 0 347 71 18 18 chr4 153878637 153878693 -48449654 + MLT2A1 LTR ERVL 398 453 0 * 994 259 123 0 chr4 153878693 153878992 -48449355 - LTR16B LTR ERVL -125 339 4 2430 231 47 55 chr4 153878992 153879114 -48449233 + MLT2F LTR ERVL 1 123 -540 756 160 0 186 chr4 153879114 153879351 -48448996 + 7SK RNA RNA 1 193 0 2430 231 47 55 chr4 153879351 153879895 -48448452 + MLT2F LTR ERVL 123 661 -2 429 289 100 31 chr4 153879907 153880267 -48448080 + HAL1 LINE L1 1887 2271 -236 715 198 8 16 chr4 153880503 153880629 -48447718 - FLAM_A SINE Alu -8 125 1 471 100 0 0 chr4 153880976 153881046 -48447301 + (TG)n Simple_repeat Simple_repeat 2 71 0 1822 178 0 0 chr4 153881645 153881949 -48446398 + AluJb SINE Alu 1 304 -8 721 189 8 0 chr4 153882033 153882165 -48446182 + FLAM_C SINE Alu 1 133 0 2152 138 0 0 chr4 153882211 153882515 -48445832 + AluSx SINE Alu 1 304 -8 2163 124 13 3 chr4 153882523 153882830 -48445517 + AluSx SINE Alu 1 310 -2 313 215 38 13 chr4 153882904 153882983 -48445364 + HAL1 LINE L1 1447 1527 -980 243 0 0 0 chr4 153882992 153883019 -48445328 + (A)n Simple_repeat Simple_repeat 1 27 0 556 226 45 7 chr4 153883091 153883246 -48445101 + HAL1 LINE L1 1447 1607 -900 630 252 90 51 chr4 153883469 153883578 -48444769 - MIR SINE MIR 0 262 159 2100 126 0 3 chr4 153883578 153883872 -48444475 - AluSc SINE Alu -16 293 1 630 252 90 51 chr4 153883872 153883996 -48444351 - MIR SINE MIR -103 159 20 393 22 0 0 chr4 153884097 153884143 -48444204 + (TG)n Simple_repeat Simple_repeat 2 47 0 2192 88 10 7 chr4 153884143 153884426 -48443921 - AluSp SINE Alu -26 287 1 190 214 0 0 chr4 153884482 153884524 -48443823 - L2 LINE L2 -9 3263 3222 335 209 9 95 chr4 153884555 153884660 -48443687 - MIR SINE MIR -114 148 53 26 0 0 0 chr4 153889126 153889152 -48439195 + AT_rich Low_complexity Low_complexity 1 26 0 604 314 30 30 chr4 153889173 153889420 -48438927 - MIR SINE MIR -12 250 3 23 0 0 0 chr4 153890667 153890690 -48437657 + AT_rich Low_complexity Low_complexity 1 23 0 260 331 61 31 chr4 153891031 153891194 -48437153 - MIR SINE MIR -70 192 25 253 297 55 55 chr4 153892178 153892306 -48436041 - L2 LINE L2 -13 3259 3132 13026 147 45 29 chr4 153892915 153893559 -48434788 - Tigger1 DNA MER2_type 0 2418 1785 1523 177 0 19 chr4 153893559 153893830 -48434517 - AluJo SINE Alu -13 299 34 13026 147 45 29 chr4 153893830 153895566 -48432781 - Tigger1 DNA MER2_type -633 1785 1 1852 158 37 13 chr4 153896003 153896377 -48431970 + L1MA8 LINE L1 5906 6288 -3 1939 119 42 7 chr4 153896596 153896882 -48431465 + AluSg SINE Alu 1 296 -14 929 73 8 0 chr4 153897875 153897998 -48430349 + AluY SINE Alu 175 298 -13 632 160 0 8 chr4 153898029 153898154 -48430193 + (TG)n Simple_repeat Simple_repeat 2 125 0 2484 172 22 49 chr4 153898464 153898710 -48429637 + L1MB2 LINE L1 5593 5844 -327 2153 115 0 7 chr4 153898710 153899014 -48429333 + AluSx SINE Alu 11 312 0 2484 172 22 49 chr4 153899014 153899361 -48428986 + L1MB2 LINE L1 5844 6170 -1 4153 66 16 4 chr4 153899464 153900011 -48428336 + MER41A LTR ERV1 1 554 0 316 113 288 12 chr4 153900011 153900091 -48428256 + MER41A-int LTR ERV1 1 102 -5844 222 232 36 18 chr4 153900106 153900162 -48428185 - L2 LINE L2 -6 3307 3251 436 277 158 88 chr4 153900827 153901271 -48427076 + L2 LINE L2 2025 2499 -815 380 345 84 62 chr4 153901596 153902034 -48426313 + L2 LINE L2 2825 3272 0 1560 102 184 12 chr4 153905250 153905505 -48422842 + AluSg1 SINE Alu 1 299 -10 2016 148 3 3 chr4 153905749 153906052 -48422295 + AluSx SINE Alu 1 303 -9 3328 133 42 13 chr4 153906112 153906707 -48421640 + L1MA8 LINE L1 5660 6271 -20 1373 237 10 65 chr4 153907156 153907569 -48420778 + L1ME2 LINE L1 5765 6154 -10 556 245 77 5 chr4 153907611 153907807 -48420540 + L1MC4 LINE L1 7832 8041 -1 198 0 0 0 chr4 153908630 153908652 -48419695 + (TTTC)n Simple_repeat Simple_repeat 2 23 0 529 274 157 50 chr4 153908717 153909410 -48418937 + L1ME4a LINE L1 5355 6121 0 289 335 81 29 chr4 153910102 153910311 -48418036 - MIR SINE MIR -27 235 16 203 294 0 0 chr4 153910712 153910763 -48417584 - MIR SINE MIR 0 262 212 1143 238 42 72 chr4 153911209 153911621 -48416726 + MLT1J LTR MaLR 27 464 -47 384 289 8 16 chr4 153911665 153911786 -48416561 - MIR SINE MIR -109 153 34 2189 111 0 0 chr4 153912055 153912344 -48416003 + AluSc SINE Alu 1 289 -20 446 321 141 53 chr4 153912536 153913041 -48415306 + L1MEc LINE L1 74 622 -5774 1840 191 73 32 chr4 153913064 153913560 -48414787 + Charlie1b DNA MER1_type 8 523 0 749 264 2 0 chr4 153913568 153913746 -48414601 + MER58A DNA MER1_type 1 180 0 4235 173 56 9 chr4 153913746 153914550 -48413797 + L1MB4 LINE L1 5290 6138 -42 2172 125 3 0 chr4 153914550 153914854 -48413493 + AluSp SINE Alu 1 305 -8 4235 173 56 9 chr4 153914854 153914900 -48413447 + L1MB4 LINE L1 6138 6180 0 23 33 0 0 chr4 153914934 153914964 -48413383 + AT_rich Low_complexity Low_complexity 1 30 0 384 135 189 9 chr4 153914964 153915075 -48413272 + L1M4 LINE L1 3856 3986 -2160 511 266 124 35 chr4 153916132 153916324 -48412023 - Tigger8 DNA MER2_type -131 535 362 1717 172 21 7 chr4 153916324 153916615 -48411732 - AluJo SINE Alu -13 299 5 511 266 124 35 chr4 153916615 153916768 -48411579 - Tigger8 DNA MER2_type -304 362 159 22 0 0 0 chr4 153917086 153917108 -48411239 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr4 153917556 153917592 -48410755 + AT_rich Low_complexity Low_complexity 1 36 0 734 321 145 31 chr4 153918172 153918695 -48409652 - L3 LINE CR1 -132 1445 863 2845 281 7 24 chr4 153918863 153919600 -48408747 + L1PA15 LINE L1 1 724 -6063 * 4417 200 5 28 chr4 153919598 153920344 -48408003 + L1PA15 LINE L1 1347 2068 -4719 2431 84 0 0 chr4 153920344 153920654 -48407693 + AluY SINE Alu 2 311 0 4417 200 5 28 chr4 153920654 153920861 -48407486 + L1PA15 LINE L1 2068 2278 -4509 8451 188 23 26 chr4 153920861 153923258 -48405089 + L1PA15 LINE L1 4203 6589 -227 2344 105 0 0 chr4 153923258 153923563 -48404784 + AluSx SINE Alu 1 305 -7 8451 188 23 26 chr4 153923563 153923788 -48404559 + L1PA15 LINE L1 6589 6813 -3 617 273 37 32 chr4 153923793 153923980 -48404367 + MER58A DNA MER1_type 31 218 -6 2348 76 10 3 chr4 153924051 153924353 -48403994 + AluSp SINE Alu 1 304 -9 652 145 17 17 chr4 153924413 153924530 -48403817 + FLAM_C SINE Alu 1 117 -26 22 0 0 0 chr4 153924650 153924672 -48403675 + AT_rich Low_complexity Low_complexity 1 22 0 811 167 0 0 chr4 153925301 153925433 -48402914 - FLAM_C SINE Alu 0 133 2 2191 104 3 0 chr4 153925584 153925873 -48402474 - AluSp SINE Alu -23 290 1 252 219 59 50 chr4 153926415 153926534 -48401813 - L1MC4a LINE L1 -1834 5974 5855 275 279 13 0 chr4 153926585 153926664 -48401683 - MIR SINE MIR 0 262 183 765 232 137 14 chr4 153926698 153926982 -48401365 - L1MC4a LINE L1 -297 5824 5506 563 211 123 5 chr4 153926983 153927219 -48401128 + Charlie5 DNA MER1_type 58 2624 0 21 0 0 0 chr4 153927295 153927316 -48401031 + AT_rich Low_complexity Low_complexity 1 21 0 907 204 0 0 chr4 153927395 153927552 -48400795 - AluJb SINE Alu -12 300 144 1173 101 129 0 chr4 153927905 153928083 -48400264 + MER30 DNA MER1_type 1 201 -29 1046 149 189 29 chr4 153928132 153928407 -48399940 + MER33 DNA MER1_type 1 319 -5 1015 158 108 5 chr4 153928501 153928704 -48399643 + AluJo SINE Alu 84 307 -5 847 112 0 0 chr4 153929282 153929398 -48398949 - AluSg/x SINE Alu -6 303 188 1381 119 0 16 chr4 153929493 153929687 -48398660 - AluSq SINE Alu -122 191 1 622 212 135 29 chr4 153929859 153930029 -48398318 + MER5A DNA MER1_type 1 188 -1 845 149 28 145 chr4 153930038 153930286 -48398061 - MER20 DNA MER1_type 0 219 1 671 121 0 10 chr4 153930782 153930881 -48397466 - AluJb SINE Alu -13 299 202 537 204 76 23 chr4 153930977 153931109 -48397238 - MER3 DNA MER1_type -22 187 49 2170 134 0 3 chr4 153931189 153931495 -48396852 + AluSx SINE Alu 1 305 -7 1673 308 95 34 chr4 153931510 153932597 -48395750 + L2 LINE L2 1992 3147 -166 818 225 181 17 chr4 153933531 153933824 -48394523 + MER2 DNA MER2_type 4 344 0 202 362 58 43 chr4 153933826 153933964 -48394383 + L2 LINE L2 2966 3105 -167 588 227 46 79 chr4 153934008 153934224 -48394123 + MIR SINE MIR 54 262 0 230 314 0 0 chr4 153934255 153934306 -48394041 + L2 LINE L2 3143 3193 -79 2080 82 18 0 chr4 153934971 153935253 -48393094 - L1PA8A LINE L1 -358 5810 5524 431 111 0 0 chr4 153935250 153935313 -48393034 + L1PA8A LINE L1 5793 5855 -276 * 311 227 219 0 chr4 153935326 153935445 -48392902 + L1MCc LINE L1 781 925 -5498 2253 91 10 0 chr4 153935450 153935759 -48392588 + L1PA10 LINE L1 5853 6164 -4 2390 264 151 35 chr4 153935761 153937362 -48390985 + L1MCc LINE L1 51 1832 -4889 831 241 0 6 chr4 153937364 153937530 -48390817 - MLT1F LTR MaLR -376 166 2 1538 222 65 8 chr4 153937534 153937921 -48390426 + L1ME1 LINE L1 5753 6161 -5 280 296 43 27 chr4 153938164 153938350 -48389997 + HAL1b LINE L1 331 519 -829 3926 124 26 80 chr4 153938608 153939347 -48389000 + MER44D DNA MER2_type 1 699 -6 839 136 0 0 chr4 153939700 153939818 -48388529 + FLAM_C SINE Alu 1 118 -15 199 214 143 48 chr4 153939963 153940047 -48388300 + MIR3 SINE MIR 113 204 -4 753 156 0 8 chr4 153940148 153940270 -48388077 - FLAM_A SINE Alu -8 125 5 1713 145 37 7 chr4 153940355 153940651 -48387696 + AluJb SINE Alu 3 307 -5 201 208 42 0 chr4 153942587 153942635 -48385712 + L2 LINE L2 3262 3311 -2 666 188 47 13 chr4 153943625 153943774 -48384573 + FRAM SINE Alu 1 146 -30 269 212 204 62 chr4 153944295 153944408 -48383939 - L2 LINE L2 -2 3311 3183 3997 241 298 25 chr4 153944493 153946666 -48381681 - L2 LINE L2 -136 3177 381 23 0 0 0 chr4 153946667 153946690 -48381657 + AT_rich Low_complexity Low_complexity 1 23 0 931 171 13 0 chr4 153947192 153947344 -48381003 - AluJb SINE Alu -15 297 144 261 157 157 11 chr4 153947494 153947583 -48380764 - L1 LINE L1 -1676 4470 4369 25 51 0 0 chr4 153948231 153948270 -48380077 + AT_rich Low_complexity Low_complexity 1 39 0 186 294 0 82 chr4 153948471 153948556 -48379791 - L3 LINE CR1 -1 1576 1499 26 30 0 0 chr4 153948774 153948807 -48379540 + AT_rich Low_complexity Low_complexity 1 33 0 267 326 0 12 chr4 153949857 153949943 -48378404 - L2 LINE L2 -3 3269 3185 30 0 0 0 chr4 153949976 153950006 -48378341 + AT_rich Low_complexity Low_complexity 1 30 0 1001 218 16 33 chr4 153951012 153951255 -48377092 - MER8 DNA MER2_type 0 239 1 416 283 113 6 chr4 153951696 153951855 -48376492 + MER5B DNA MER1_type 3 178 0 24 53 0 0 chr4 153952744 153952782 -48375565 + AT_rich Low_complexity Low_complexity 1 38 0 2098 88 53 3 chr4 153953904 153954187 -48374160 - AluSp SINE Alu -16 297 1 2367 62 0 14 chr4 153954760 153955052 -48373295 - AluY SINE Alu -23 288 1 280 331 62 31 chr4 153956219 153956379 -48371968 - MIR SINE MIR -51 211 47 398 195 0 0 chr4 153956431 153956508 -48371839 + L1MEd LINE L1 82 158 -5961 621 310 135 55 chr4 153956544 153957070 -48371277 + L1MEd LINE L1 223 790 -5329 285 229 14 14 chr4 153957411 153957481 -48370866 + L1MEd LINE L1 1170 1239 -4880 524 202 116 10 chr4 153957776 153957974 -48370373 - MER20B DNA MER1_type -22 761 543 28 29 0 0 chr4 153959055 153959090 -48369257 + AT_rich Low_complexity Low_complexity 1 35 0 408 215 38 0 chr4 153959110 153959189 -48369158 - MER3 DNA MER1_type -126 83 2 208 147 0 0 chr4 153961659 153961693 -48366654 + (T)n Simple_repeat Simple_repeat 1 34 0 226 349 37 18 chr4 153962301 153962410 -48365937 + MIR3 SINE MIR 73 183 -25 26 50 0 0 chr4 153964210 153964250 -48364097 + AT_rich Low_complexity Low_complexity 1 40 0 2250 103 3 0 chr4 153965017 153965318 -48363029 + AluY SINE Alu 1 302 -9 528 176 7 74 chr4 153965347 153965495 -48362852 + L1M4 LINE L1 5154 5291 -855 279 169 138 0 chr4 153965515 153965580 -48362767 + L1M4 LINE L1 5802 5875 -299 1701 178 38 0 chr4 153965961 153966248 -48362099 + AluJb SINE Alu 1 298 -14 28 0 0 0 chr4 153966567 153966595 -48361752 + AT_rich Low_complexity Low_complexity 1 28 0 2043 137 3 10 chr4 153968610 153968917 -48359430 + AluSq SINE Alu 1 305 -8 442 259 161 5 chr4 153968951 153969144 -48359203 + HsTC2 DNA Tc2 62 284 -1614 1726 120 89 0 chr4 153969208 153969466 -48358881 + AluY SINE Alu 1 281 -30 255 225 113 0 chr4 153969527 153969607 -48358740 + HsTC2 DNA Tc2 1784 1872 -26 2032 115 0 11 chr4 153969727 153970014 -48358333 - AluSg1 SINE Alu -19 290 7 223 393 9 27 chr4 153970141 153970253 -48358094 + L2 LINE L2 3121 3230 -42 307 296 0 37 chr4 153971800 153971908 -48356439 + MER5B DNA MER1_type 74 177 -1 253 235 109 60 chr4 153972319 153972502 -48355845 - L1ME4a LINE L1 -22 6099 5908 2099 98 30 0 chr4 153973077 153973372 -48354975 - AluSx SINE Alu -8 304 1 182 291 194 19 chr4 153973542 153973645 -48354702 + L2 LINE L2 3151 3271 -1 216 309 62 12 chr4 153973854 153973935 -48354412 + MIR SINE MIR 142 226 -36 268 239 124 26 chr4 153974202 153974315 -48354032 - L1MEd LINE L1 -5345 774 651 301 266 32 21 chr4 153974809 153974903 -48353444 - L1MEd LINE L1 -5496 623 529 2150 102 7 10 chr4 153975425 153975719 -48352628 - AluSg SINE Alu -17 293 1 316 269 115 19 chr4 153976808 153976912 -48351435 + MIR SINE MIR 48 161 -101 327 281 68 7 chr4 153982337 153982493 -48345854 + MIR3 SINE MIR 25 197 -11 400 335 40 7 chr4 153982927 153983079 -48345268 - MIR SINE MIR -58 204 48 2208 101 0 13 chr4 153984309 153984615 -48343732 + AluY SINE Alu 1 302 -9 835 119 0 16 chr4 153985981 153986107 -48342240 - AluJb SINE Alu -183 129 6 282 29 0 0 chr4 153989881 153989916 -48338431 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2253 101 3 0 chr4 153991643 153991940 -48336407 + AluSq SINE Alu 1 298 -15 2032 210 33 9 chr4 153992424 153992876 -48335471 + MLT1C LTR MaLR 1 463 -4 823 81 0 0 chr4 153992964 153993075 -48335272 - HY1 scRNA scRNA -1 111 1 363 308 77 87 chr4 153993093 153993405 -48334942 + L1MEd LINE L1 102 410 -5709 2136 124 0 3 chr4 153994779 153995077 -48333270 + AluSg SINE Alu 1 297 -13 1978 126 39 3 chr4 153995550 153995836 -48332511 - AluSc SINE Alu -13 296 1 2053 113 0 56 chr4 153996141 153996460 -48331887 - AluSx SINE Alu -11 301 1 606 292 39 26 chr4 153996703 153996936 -48331411 + MIR SINE MIR 15 250 -12 905 175 31 57 chr4 153998071 153998265 -48330082 - MER20 DNA MER1_type -1 218 30 205 264 0 0 chr4 153999559 153999612 -48328735 + (TATATG)n Simple_repeat Simple_repeat 3 55 0 2289 91 3 0 chr4 153999827 154000123 -48328224 + AluSp SINE Alu 1 297 -16 583 234 75 57 chr4 154000204 154000258 -48328089 - L2 LINE L2 0 3313 3261 1202 194 30 21 chr4 154000258 154000495 -48327852 - MER8 DNA MER2_type 0 239 1 583 234 75 57 chr4 154000495 154000667 -48327680 - L2 LINE L2 -52 3261 3083 965 116 67 18 chr4 154000668 154000832 -48327515 + THE1C LTR MaLR 1 172 -203 2333 80 17 0 chr4 154000836 154001137 -48327210 + AluSp SINE Alu 5 310 -3 2202 73 11 0 chr4 154001630 154001904 -48326443 + AluY SINE Alu 1 277 -34 285 51 0 0 chr4 154001909 154001948 -48326399 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 23 33 0 0 chr4 154001966 154001996 -48326351 + AT_rich Low_complexity Low_complexity 1 30 0 366 271 162 39 chr4 154002166 154002395 -48325952 - MIR SINE MIR -2 260 4 310 268 187 8 chr4 154003389 154003512 -48324835 - MIR SINE MIR -27 235 91 341 242 184 38 chr4 154003567 154003700 -48324647 + MIR3 SINE MIR 3 165 -43 2064 132 0 0 chr4 154003957 154004245 -48324102 + AluSx SINE Alu 1 288 -24 1991 133 0 7 chr4 154004252 154004570 -48323777 + AluSx SINE Alu 1 316 0 858 235 17 0 chr4 154005029 154005208 -48323139 + MER20 DNA MER1_type 32 213 -6 1061 152 0 0 chr4 154005414 154005565 -48322782 - FRAM SINE Alu -27 149 1 2414 62 7 3 chr4 154005698 154006006 -48322341 + AluY SINE Alu 1 309 -2 21 0 0 0 chr4 154006384 154006405 -48321942 + AT_rich Low_complexity Low_complexity 1 21 0 2290 89 7 7 chr4 154007130 154007433 -48320914 - AluSp SINE Alu -10 303 1 304 230 95 0 chr4 154007711 154007785 -48320562 - L2 LINE L2 -2 3311 3231 23 54 0 0 chr4 154007836 154007873 -48320474 + AT_rich Low_complexity Low_complexity 1 37 0 1545 143 4 8 chr4 154008003 154008240 -48320107 + MER46A DNA MER2_type 1 236 0 2345 82 7 0 chr4 154008908 154009201 -48319146 - AluSp SINE Alu -18 295 1 3654 158 68 33 chr4 154009348 154010097 -48318250 + L1MB7 LINE L1 5410 6184 0 1922 140 0 14 chr4 154010110 154010402 -48317945 + AluSx SINE Alu 1 288 -24 21 95 0 0 chr4 154010402 154010465 -48317882 + AT_rich Low_complexity Low_complexity 1 63 0 1453 138 189 50 chr4 154010477 154010774 -48317573 - MER44D DNA MER2_type -1 608 1 2212 120 0 0 chr4 154011304 154011605 -48316742 + AluSx SINE Alu 1 301 -11 1590 205 143 35 chr4 154011795 154012278 -48316069 - LTR10A LTR ERV1 -61 548 14 677 267 80 65 chr4 154012674 154013217 -48315130 + LTR50 LTR ERVL 11 523 0 2350 100 3 0 chr4 154013690 154014001 -48314346 - AluSp SINE Alu -1 312 1 2239 110 3 7 chr4 154014004 154014312 -48314035 - AluSp SINE Alu -6 307 1 817 198 123 42 chr4 154014480 154014692 -48313655 + LTR41 LTR ERVL 1 229 -544 635 256 191 27 chr4 154014741 154015000 -48313347 + LTR41 LTR ERVL 348 649 -124 4357 98 41 5 chr4 154015000 154015612 -48312735 - MER4A LTR ERV1 0 664 31 263 268 0 0 chr4 154015764 154015835 -48312512 + MLT1K LTR MaLR 495 565 -23 1231 185 125 34 chr4 154016222 154016519 -48311828 + MER2 DNA MER2_type 22 345 0 2554 56 20 0 chr4 154017287 154017592 -48310755 - AluY SINE Alu 0 311 1 2595 38 3 0 chr4 154019251 154019544 -48308803 + AluY SINE Alu 1 294 -17 775 238 117 86 chr4 154019565 154019960 -48308387 + L1MC4a LINE L1 5530 5936 -1872 276 351 97 0 chr4 154020317 154020451 -48307896 - MIR SINE MIR 0 262 116 524 229 72 18 chr4 154021521 154021687 -48306660 - LTR33A LTR ERVL -1 522 348 522 283 20 40 chr4 154021707 154021859 -48306488 - LTR33A LTR ERVL -364 159 11 2643 112 22 6 chr4 154021897 154022255 -48306092 - THE1B LTR MaLR 0 364 1 2354 295 87 19 chr4 154022597 154023762 -48304585 - ERVL LTR ERVL -355 5130 4068 2324 307 52 55 chr4 154023820 154024213 -48304134 - ERVL LTR ERVL -3552 2212 1820 2264 125 0 0 chr4 154024213 154024524 -48303823 + AluSq SINE Alu 1 311 -2 2324 307 52 55 chr4 154024524 154025304 -48303043 - ERVL LTR ERVL -3944 1820 1040 2353 105 3 0 chr4 154025304 154025610 -48302737 + AluSq SINE Alu 1 307 -6 2324 307 52 55 chr4 154025610 154025771 -48302576 - ERVL LTR ERVL -4724 1040 880 2480 54 0 25 chr4 154027026 154027343 -48301004 - AluY SINE Alu -2 309 1 625 311 41 24 chr4 154027352 154027763 -48300584 - HAL1 LINE L1 -975 1532 1115 385 292 148 34 chr4 154028126 154028362 -48299985 + MLT1H LTR MaLR 24 286 -263 471 262 190 36 chr4 154028547 154028716 -48299631 + L2 LINE L2 2766 2908 -405 2654 143 41 7 chr4 154028716 154029128 -48299219 + MSTB LTR MaLR 1 426 0 471 262 190 36 chr4 154029128 154029360 -48298987 + L2 LINE L2 2908 3243 -70 1901 207 141 47 chr4 154029361 154029941 -48298406 - LTR27 LTR ERV1 0 636 2 846 185 0 26 chr4 154030028 154030179 -48298168 - FAM SINE Alu -23 162 16 21 71 0 0 chr4 154030427 154030469 -48297878 + AT_rich Low_complexity Low_complexity 1 42 0 644 290 64 23 chr4 154030752 154030858 -48297489 - L1ME4a LINE L1 -272 5849 5749 2200 113 0 31 chr4 154030858 154031178 -48297169 - AluSg SINE Alu 0 310 1 644 290 64 23 chr4 154031178 154031416 -48296931 - L1ME4a LINE L1 -372 5749 5491 2807 119 35 26 chr4 154031418 154031879 -48296468 - L1MB3 LINE L1 -1 6182 5718 234 285 78 109 chr4 154033298 154033491 -48294856 - MIR SINE MIR -18 244 58 383 145 137 17 chr4 154033736 154033853 -48294494 - LTR55 LTR ERV 0 548 418 1514 146 38 56 chr4 154033909 154034197 -48294150 - LTR55 LTR ERV -265 283 1 232 175 0 25 chr4 154034400 154034440 -48293907 - U6 snRNA snRNA -68 39 1 198 306 0 61 chr4 154035248 154035346 -48293001 - MIR SINE MIR -49 213 122 6493 178 39 30 chr4 154035514 154036941 -48291406 + L1 LINE L1 3842 5280 -866 1584 97 0 55 chr4 154037041 154037278 -48291069 + AluSg/x SINE Alu 68 291 -19 2353 65 3 37 chr4 154042415 154042738 -48285609 + AluSp SINE Alu 1 312 -1 1920 195 95 68 chr4 154043543 154044071 -48284276 + MLT1F LTR MaLR 1 542 0 688 257 117 74 chr4 154044397 154044650 -48283697 + MLT1J LTR MaLR 3 244 -267 1981 106 64 0 chr4 154044650 154044933 -48283414 + AluSx SINE Alu 1 301 -11 688 257 117 74 chr4 154044933 154044958 -48283389 + MLT1J LTR MaLR 244 266 -245 2214 99 0 13 chr4 154044958 154045260 -48283087 + AluSg SINE Alu 2 299 -11 688 257 117 74 chr4 154045260 154045400 -48282947 + MLT1J LTR MaLR 266 440 -71 1704 143 59 11 chr4 154045654 154045941 -48282406 - AluJb SINE Alu -11 301 1 225 172 10 162 chr4 154046209 154046308 -48282039 + L2 LINE L2 2077 2160 -1154 206 167 0 48 chr4 154047178 154047220 -48281127 + GA-rich Low_complexity Low_complexity 3 42 0 347 273 45 9 chr4 154048321 154048431 -48279916 + L1MC5 LINE L1 7817 7930 -31 2109 148 0 0 chr4 154048463 154048773 -48279574 + AluSx SINE Alu 1 310 -2 276 251 0 39 chr4 154048776 154048870 -48279477 + MER5B DNA MER1_type 83 162 -16 27 0 0 0 chr4 154048924 154048951 -48279396 + AT_rich Low_complexity Low_complexity 1 27 0 1283 101 0 6 chr4 154049359 154049527 -48278820 - AluSg/x SINE Alu -12 300 134 2129 125 0 16 chr4 154049527 154049692 -48278655 - AluSx SINE Alu -14 298 139 2350 104 0 0 chr4 154049692 154049989 -48278358 - AluSg SINE Alu -13 297 1 2129 125 0 16 chr4 154049989 154050126 -48278221 - AluSx SINE Alu -173 139 1 2748 203 57 79 chr4 154050184 154050344 -48278003 - L1ME1 LINE L1 -9 6157 5995 366 61 0 0 chr4 154050344 154050393 -48277954 + (CA)n Simple_repeat Simple_repeat 1 49 0 2748 203 57 79 chr4 154050393 154050457 -48277890 - L1ME1 LINE L1 -171 5995 5931 2380 93 3 3 chr4 154050457 154050768 -48277579 - AluY SINE Alu 0 311 1 2748 203 57 79 chr4 154050768 154051233 -48277114 - L1ME1 LINE L1 -235 5931 5486 2225 76 0 28 chr4 154051233 154051523 -48276824 - AluY SINE Alu -13 298 17 2748 203 57 79 chr4 154051523 154051667 -48276680 - L1ME1 LINE L1 -680 5486 5340 2518 246 45 10 chr4 154051684 154052309 -48276038 - L1MEc LINE L1 -5715 681 35 2086 149 0 0 chr4 154052386 154052694 -48275653 - AluSx SINE Alu -4 308 1 2016 105 0 44 chr4 154052708 154052910 -48275437 - AluSg SINE Alu 0 306 121 2269 79 48 0 chr4 154052910 154053201 -48275146 - AluY SINE Alu -6 305 1 2016 105 0 44 chr4 154053201 154053317 -48275030 - AluSg SINE Alu -185 121 1 2094 207 27 23 chr4 154053400 154053687 -48274660 + L1ME4a LINE L1 4245 4536 -1610 2158 126 0 0 chr4 154053687 154053981 -48274366 - AluSg SINE Alu -16 294 1 2094 207 27 23 chr4 154053981 154054206 -48274141 + L1ME4a LINE L1 4536 4759 -1387 558 150 0 0 chr4 154054206 154054286 -48274061 + AluS SINE Alu 3 82 -230 525 262 76 70 chr4 154054506 154054734 -48273613 + L1ME4a LINE L1 5555 5789 -332 1894 132 7 7 chr4 154054734 154055022 -48273325 + AluSg SINE Alu 1 288 -22 525 262 76 70 chr4 154055022 154055239 -48273108 + L1ME4a LINE L1 5789 6003 -118 2240 111 0 10 chr4 154055750 154056056 -48272291 + AluSq SINE Alu 2 304 -9 24 0 0 0 chr4 154056186 154056210 -48272137 + AT_rich Low_complexity Low_complexity 1 24 0 282 193 35 0 chr4 154056370 154056427 -48271920 + L1ME1 LINE L1 5147 5205 -941 1042 147 0 0 chr4 154056427 154056584 -48271763 + AluSg/x SINE Alu 156 312 0 2824 223 68 10 chr4 154056601 154057475 -48270872 + L1ME1 LINE L1 5188 6157 -9 1865 134 53 7 chr4 154057663 154057946 -48270401 - AluSx SINE Alu -16 296 1 414 296 117 11 chr4 154058062 154058241 -48270106 - L2 LINE L2 -64 3249 3052 276 252 48 39 chr4 154058282 154058385 -48269962 + MER5A DNA MER1_type 64 167 -22 * 444 254 33 16 chr4 154058294 154058416 -48269931 - MER5A DNA MER1_type -63 126 3 202 244 37 85 chr4 154058772 154058854 -48269493 + L2 LINE L2 3212 3289 -24 2107 112 38 0 chr4 154059227 154059514 -48268833 + AluSc SINE Alu 1 298 -11 313 376 62 16 chr4 154061019 154061261 -48267086 - L3 LINE CR1 -3 1574 1322 2325 71 0 10 chr4 154061284 154061580 -48266767 + AluY SINE Alu 1 293 -18 271 219 110 14 chr4 154061580 154061653 -48266694 + MIR SINE MIR 175 254 -8 1533 141 134 0 chr4 154062181 154062443 -48265904 - AluSg SINE Alu -11 299 3 2146 117 0 10 chr4 154063720 154064020 -48264327 - AluSg SINE Alu -13 297 1 927 85 25 176 chr4 154064082 154064281 -48264066 - AluSp SINE Alu -54 259 91 639 295 79 20 chr4 154114386 154114640 -48213707 - L2 LINE L2 -1810 1504 1236 30 69 0 0 chr4 154115053 154115111 -48213236 + AT_rich Low_complexity Low_complexity 1 58 0 1697 180 4 0 chr4 154115159 154115437 -48212910 + AluSx SINE Alu 34 312 0 206 79 0 53 chr4 154115437 154115475 -48212872 + (GAGAA)n Simple_repeat Simple_repeat 1 36 0 2197 135 0 0 chr4 154115484 154115796 -48212551 + AluSx SINE Alu 1 312 0 345 346 38 49 chr4 154117483 154117668 -48210679 + MLT1K LTR MaLR 126 308 -280 1243 159 0 15 chr4 154117722 154117917 -48210430 + AluJb SINE Alu 74 265 -47 2002 122 24 3 chr4 154118180 154118467 -48209880 + AluSx SINE Alu 1 293 -19 9232 224 28 58 chr4 154118476 154120957 -48207390 + L1P LINE L1 11 2417 -3729 949 222 18 0 chr4 154121068 154121289 -48207058 - L1 LINE L1 -743 5403 5179 3803 77 18 18 chr4 154123102 154123226 -48205121 - L1P3 LINE L1 -638 5516 5393 2164 121 3 3 chr4 154123226 154123523 -48204824 - AluSp SINE Alu -16 297 1 3803 77 18 18 chr4 154123523 154124084 -48204263 - L1P3 LINE L1 -761 5393 4837 * 7824 88 13 42 chr4 154124080 154124960 -48203387 - L1P3 LINE L1 -2465 3681 2844 2348 84 3 3 chr4 154124960 154125257 -48203090 - AluSc SINE Alu -12 297 1 7824 88 13 42 chr4 154125257 154125589 -48202758 - L1P3 LINE L1 -3302 2844 2504 2476 100 47 33 chr4 154126564 154126923 -48201424 - THE1B LTR MaLR 0 364 1 640 297 33 50 chr4 154127134 154127437 -48200910 + L2 LINE L2 2987 3284 -29 273 247 0 59 chr4 154127437 154127522 -48200825 + GA-rich Low_complexity Low_complexity 2 81 0 2085 124 3 0 chr4 154127661 154127967 -48200380 + HERVH LTR ERV1 2121 2427 -5286 3555 135 0 32 chr4 154127970 154128540 -48199807 + HERVH LTR ERV1 4001 4552 -3161 1609 145 0 4 chr4 154128530 154128792 -48199555 + HERVH LTR ERV1 5756 6016 -1697 * 3751 100 18 7 chr4 154128785 154129336 -48199011 + HERVH LTR ERV1 7157 7713 0 510 152 13 0 chr4 154129336 154129415 -48198932 + LTR7 LTR ERV1 1 80 -370 412 266 53 80 chr4 154129803 154129872 -48198475 + MIR SINE MIR 42 111 -151 2289 99 3 13 chr4 154129872 154130175 -48198172 - AluSx SINE Alu -12 300 1 412 266 53 80 chr4 154130175 154130331 -48198016 + MIR SINE MIR 111 261 -1 2663 33 0 0 chr4 154130870 154131169 -48197178 - L1PA4 LINE L1 0 6155 5857 645 214 12 46 chr4 154132322 154132495 -48195852 + AluJb SINE Alu 145 311 -1 243 0 0 0 chr4 154132908 154132935 -48195412 + (TG)n Simple_repeat Simple_repeat 2 28 0 4424 168 9 23 chr4 154133230 154134044 -48194303 - L1MB1 LINE L1 -1 6167 5366 188 319 34 50 chr4 154134588 154134707 -48193640 + L2 LINE L2 3156 3272 0 3920 199 23 19 chr4 154135459 154135667 -48192680 - L1MC1 LINE L1 -236 6097 5891 2086 152 38 22 chr4 154135667 154136036 -48192311 + THE1C LTR MaLR 1 375 0 3920 199 23 19 chr4 154136036 154136737 -48191610 - L1MC1 LINE L1 -442 5891 5187 2111 110 0 0 chr4 154136747 154137049 -48191298 - AluY SINE Alu 0 318 17 290 137 0 20 chr4 154137176 154137227 -48191120 - MLT1L LTR MaLR -544 71 22 446 157 1 4 chr4 154137227 154137306 -48191041 - MLT1A1 LTR MaLR -1 389 287 237 242 97 0 chr4 154138122 154138184 -48190163 - U6 snRNA snRNA -38 69 2 1044 167 0 0 chr4 154138425 154138581 -48189766 - AluSg/x SINE Alu -20 292 137 211 167 83 21 chr4 154138735 154138783 -48189564 + L2 LINE L2 2430 2480 -834 1285 284 69 16 chr4 154138791 154139377 -48188970 + L2 LINE L2 2458 3072 -241 952 136 163 68 chr4 154139643 154139787 -48188560 + ORSL DNA AcHobo 1 130 -145 1934 98 68 4 chr4 154139787 154140086 -48188261 + AluSg SINE Alu 1 316 0 952 136 163 68 chr4 154140086 154140191 -48188156 + ORSL DNA AcHobo 130 275 0 371 218 78 7 chr4 154140533 154140675 -48187672 + HAL1b LINE L1 1192 1343 -5 351 0 0 0 chr4 154140817 154140856 -48187491 + (CA)n Simple_repeat Simple_repeat 1 39 0 725 204 107 22 chr4 154141365 154141585 -48186762 - Charlie8 DNA MER1_type -2141 276 37 1242 189 86 34 chr4 154141843 154142134 -48186213 - AluJo SINE Alu -6 306 1 540 141 0 35 chr4 154142531 154142616 -48185731 + AluJb SINE Alu 208 289 -23 2268 116 0 7 chr4 154142733 154143036 -48185311 + AluSg SINE Alu 1 301 -9 727 100 131 8 chr4 154143105 154143235 -48185112 - L1MB2 LINE L1 -7 6164 6019 1439 189 41 139 chr4 154143235 154143695 -48184652 + MLT2C2 LTR ERVL 2 416 -48 297 128 0 0 chr4 154143695 154143742 -48184605 + (TG)n Simple_repeat Simple_repeat 1 47 0 340 103 0 0 chr4 154143743 154143799 -48184548 + MLT2C1 LTR ERVL 353 397 0 5961 178 40 31 chr4 154143800 154143873 -48184474 - L1MB2 LINE L1 -148 6023 5952 1846 126 25 7 chr4 154143873 154144185 -48184162 - AluSx SINE Alu 0 317 1 1789 184 0 3 chr4 154144192 154144480 -48183867 - AluJo SINE Alu -25 287 1 5961 178 40 31 chr4 154144480 154145479 -48182868 - L1MB2 LINE L1 -224 5947 4959 1862 190 32 58 chr4 154145479 154145879 -48182468 + MLT1B LTR MaLR 1 390 0 5961 178 40 31 chr4 154145879 154146536 -48181811 - L1MB2 LINE L1 -1212 4959 4309 216 67 0 0 chr4 154146536 154146566 -48181781 + (TG)n Simple_repeat Simple_repeat 2 31 0 5961 178 40 31 chr4 154146566 154146577 -48181770 - L1MB2 LINE L1 -1862 4309 4300 1977 144 7 3 chr4 154146577 154146882 -48181465 - AluSx SINE Alu -6 306 1 5961 178 40 31 chr4 154146882 154147130 -48181217 - L1MB2 LINE L1 -1871 4300 3998 35091 79 5 8 chr4 154147310 154152055 -48176292 - L1P LINE L1 -791 5355 624 628 128 0 0 chr4 154152056 154152142 -48176205 - L1P LINE L1 -6050 96 11 925 200 233 25 chr4 154152181 154152456 -48175891 + MSTD LTR MaLR 1 332 -64 434 278 60 13 chr4 154152594 154152745 -48175602 - LTR33 LTR ERVL -363 158 1 540 285 47 47 chr4 154152916 154153169 -48175178 + MLT1J2 LTR MaLR 67 319 -131 1246 186 55 51 chr4 154153244 154153556 -48174791 + MLT1A1 LTR MaLR 2 314 -51 1908 122 47 7 chr4 154153574 154153852 -48174495 + AluSx SINE Alu 1 289 -23 194 0 39 0 chr4 154153855 154153881 -48174466 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 455 304 144 6 chr4 154154989 154155170 -48173177 + MIR SINE MIR 14 219 -43 599 276 6 49 chr4 154155256 154155419 -48172928 - L2 LINE L2 -1 3271 3116 2183 80 17 3 chr4 154156410 154156699 -48171648 + AluY SINE Alu 1 293 -18 23 68 0 0 chr4 154158020 154158064 -48170283 + AT_rich Low_complexity Low_complexity 1 44 0 1770 239 139 21 chr4 154158241 154158353 -48169994 + L2 LINE L2 1586 1683 -1631 2044 148 17 0 chr4 154158353 154158650 -48169697 - AluSx SINE Alu -10 302 1 1770 239 139 21 chr4 154158650 154159105 -48169242 + L2 LINE L2 1683 2220 -1094 560 263 51 17 chr4 154159120 154159295 -48169052 - MLT1J LTR MaLR -18 493 313 1255 120 11 0 chr4 154159299 154159474 -48168873 - AluSc SINE Alu -132 177 1 262 306 161 0 chr4 154159539 154159663 -48168684 + L2 LINE L2 2210 2353 -961 682 273 96 50 chr4 154159672 154160049 -48168298 - L2 LINE L2 -1446 1868 1475 893 210 12 0 chr4 154160388 154160550 -48167797 - FAM SINE Alu -21 164 1 1936 73 0 73 chr4 154160995 154161111 -48167236 - L1PA7 LINE L1 -8 6146 6023 2041 127 3 0 chr4 154161111 154161402 -48166945 - AluSq SINE Alu -4 309 18 1936 73 0 73 chr4 154161402 154161587 -48166760 - L1PA7 LINE L1 -131 6023 5867 1103 191 53 33 chr4 154161709 154162012 -48166335 + L1MC3 LINE L1 3968 4276 -1870 2187 136 7 0 chr4 154162055 154162357 -48165990 + AluSx SINE Alu 1 304 -8 5797 95 21 3 chr4 154162385 154163237 -48165110 + L1MA3 LINE L1 5436 6302 -3 10555 179 48 23 chr4 154163254 154165665 -48162682 + L1MC3 LINE L1 5319 6344 0 12076 122 12 4 chr4 154166570 154168471 -48159876 + Tigger1 DNA MER2_type 1 1916 -502 1544 154 11 11 chr4 154168470 154168755 -48159592 + Tigger2 DNA MER2_type 2434 2718 0 * 2448 151 28 28 chr4 154168774 154169231 -48159116 - MSTB2 LTR MaLR 0 457 1 835 244 19 7 chr4 154169288 154169558 -48158789 - L1MCa LINE L1 -3601 2825 2553 1015 132 11 2 chr4 154169678 154169935 -48158412 - L1MCa LINE L1 -3949 2477 2307 686 149 9 0 chr4 154169965 154170072 -48158275 - FLAM_A SINE Alu -21 121 14 7456 149 77 24 chr4 154170073 154172163 -48156184 - L1MCa LINE L1 -4115 2311 20 320 319 87 0 chr4 154172660 154172798 -48155549 + MLT1G1 LTR MaLR 32 181 -374 433 312 127 7 chr4 154172804 154173080 -48155267 + MLT1G1 LTR MaLR 287 595 0 337 230 7 72 chr4 154173358 154173497 -48154850 - L1ME4a LINE L1 -89 6032 5903 2078 141 0 3 chr4 154173798 154174089 -48154258 + AluSx SINE Alu 1 290 -22 1570 208 111 12 chr4 154174173 154174597 -48153750 + MLT1C LTR MaLR 1 466 -1 262 232 0 49 chr4 154174643 154174725 -48153622 + MER116 DNA Mariner 3 80 0 507 321 54 12 chr4 154174785 154174953 -48153394 - MIR SINE MIR -78 184 10 539 224 161 37 chr4 154174954 154175115 -48153232 - MER5A DNA MER1_type 0 189 9 396 311 30 0 chr4 154177669 154177833 -48150514 + LTR16A LTR ERVL 198 366 -84 669 251 49 14 chr4 154178289 154178512 -48149835 + HERV16 LTR ERVL 267 497 -4499 756 285 53 47 chr4 154178979 154179298 -48149049 + HERV16 LTR ERVL 1853 2173 -2823 399 299 132 60 chr4 154179350 154179698 -48148649 - HAL1 LINE L1 -2126 381 9 28 29 0 0 chr4 154179821 154179856 -48148491 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 154179889 154179911 -48148436 + AT_rich Low_complexity Low_complexity 1 22 0 464 221 206 0 chr4 154179987 154180118 -48148229 - MIR SINE MIR 0 262 105 2127 127 3 0 chr4 154181112 154181411 -48146936 - AluSp SINE Alu -13 300 1 7448 146 13 18 chr4 154181661 154183013 -48145334 - HERVH LTR ERV1 -5568 2145 800 1709 178 98 23 chr4 154183068 154183495 -48144852 - HERVH LTR ERV1 -7254 459 1 1245 189 134 60 chr4 154183495 154183914 -48144433 - LTR7 LTR ERV1 0 450 1 7303 47 0 5 chr4 154184363 154185301 -48143046 - L1PA6 LINE L1 0 6154 5218 234 125 0 0 chr4 154185797 154185845 -48142502 + (A)n Simple_repeat Simple_repeat 1 48 0 1332 167 179 9 chr4 154185918 154186236 -48142111 - MSTB LTR MaLR -54 372 1 8504 164 13 28 chr4 154186241 154187537 -48140810 - MSTB-int LTR MaLR -5 1646 379 2234 96 4 0 chr4 154187537 154187853 -48140494 + AluSg SINE Alu 1 317 0 8504 164 13 28 chr4 154187853 154188227 -48140120 - MSTB-int LTR MaLR -1272 379 1 940 134 89 55 chr4 154188227 154188300 -48140047 - MSTA LTR MaLR 0 428 359 2406 90 0 0 chr4 154188300 154188599 -48139748 + AluSx SINE Alu 1 299 -13 940 134 89 55 chr4 154188599 154188727 -48139620 - MSTA LTR MaLR -69 359 220 477 50 0 0 chr4 154188839 154188899 -48139448 + (CA)n Simple_repeat Simple_repeat 1 60 0 1673 120 177 28 chr4 154189601 154189918 -48138429 + THE1B LTR MaLR 1 364 0 2150 111 10 7 chr4 154189960 154190258 -48138089 - AluSc SINE Alu -10 299 1 4274 169 53 37 chr4 154190333 154191225 -48137122 - MER21A LTR ERV1 0 931 26 189 0 0 0 chr4 154191232 154191253 -48137094 + (TA)n Simple_repeat Simple_repeat 1 21 0 616 305 21 11 chr4 154191492 154191682 -48136665 + MIR SINE MIR 28 219 -43 360 345 98 27 chr4 154191784 154192026 -48136321 - L2 LINE L2 -264 3008 2747 269 306 61 0 chr4 154192016 154192114 -48136233 - MIR SINE MIR -95 167 64 * 217 297 90 45 chr4 154192101 154192212 -48136135 - L2 LINE L2 -548 2766 2651 * 388 288 184 0 chr4 154192823 154192948 -48135399 - MIR SINE MIR -18 244 97 2106 111 10 0 chr4 154192962 154193250 -48135097 - AluSx SINE Alu -20 292 2 374 273 59 14 chr4 154193393 154193629 -48134718 + L1M4 LINE L1 5176 5421 -743 21 36 0 0 chr4 154193762 154193790 -48134557 + AT_rich Low_complexity Low_complexity 1 28 0 1871 144 9 55 chr4 154195144 154195471 -48132876 - AluJo SINE Alu 0 312 1 2193 125 16 0 chr4 154195819 154196124 -48132223 + AluSx SINE Alu 1 310 -2 195 42 0 0 chr4 154196358 154196382 -48131965 + (CA)n Simple_repeat Simple_repeat 1 24 0 26 30 0 0 chr4 154198939 154198972 -48129375 + AT_rich Low_complexity Low_complexity 1 33 0 1808 142 17 7 chr4 154199279 154199567 -48128780 + AluSx SINE Alu 1 291 -21 26 30 0 0 chr4 154200762 154200795 -48127552 + AT_rich Low_complexity Low_complexity 1 33 0 339 254 0 0 chr4 154202151 154202222 -48126125 - L2 LINE L2 -14 3299 3229 235 318 27 40 chr4 154202222 154202370 -48125977 - LTR16A LTR ERVL 0 450 319 1107 321 50 35 chr4 154203078 154203897 -48124450 - HERV16 LTR ERVL -705 4949 4119 1455 260 45 17 chr4 154204052 154204658 -48123689 - HERV16 LTR ERVL -2768 2228 1569 579 250 0 0 chr4 154204734 154204854 -48123493 - HERV16 LTR ERVL -3614 1382 1263 1214 191 130 48 chr4 154204856 154205234 -48123113 + MLT1G3 LTR MaLR 106 514 -16 373 321 36 2 chr4 154205470 154205688 -48122659 + L1MC/D LINE L1 5106 5333 -813 1786 138 39 14 chr4 154205750 154206033 -48122314 + AluJb SINE Alu 4 293 -19 21 0 0 0 chr4 154206033 154206054 -48122293 + AT_rich Low_complexity Low_complexity 1 21 0 354 295 43 51 chr4 154206076 154206113 -48122234 + L1MC/D LINE L1 5414 5450 -714 1684 171 66 30 chr4 154206113 154206475 -48121872 - THE1C LTR MaLR 0 375 1 354 295 43 51 chr4 154206475 154206671 -48121676 + L1MC/D LINE L1 5450 5645 -519 409 310 137 16 chr4 154206716 154207081 -48121266 - LTR50 LTR ERVL 0 795 387 362 273 49 7 chr4 154207176 154207303 -48121044 - LTR33A LTR ERVL -361 160 53 293 297 17 0 chr4 154207339 154207457 -48120890 + L1MC/D LINE L1 5689 5808 -2000 10469 127 16 21 chr4 154207467 154208549 -48119798 + Tigger2 DNA MER2_type 1 1071 -1647 2188 118 3 7 chr4 154208549 154208878 -48119469 + AluSx SINE Alu 1 312 0 10469 127 16 21 chr4 154208878 154209561 -48118786 + Tigger2 DNA MER2_type 1071 1756 -962 1957 138 175 3 chr4 154209669 154210040 -48118307 + MLT1C LTR MaLR 33 467 0 186 339 165 18 chr4 154210201 154210310 -48118037 + L2 LINE L2 3148 3272 0 2014 136 20 0 chr4 154210968 154211262 -48117085 - AluSx SINE Alu -12 300 1 265 217 72 12 chr4 154211391 154211474 -48116873 + MLT1G1 LTR MaLR 94 181 -414 454 153 43 147 chr4 154211655 154211818 -48116529 + MLT1G LTR MaLR 441 586 -4 612 191 68 6 chr4 154212285 154212447 -48115900 - MLT1C LTR MaLR -295 172 1 448 219 34 27 chr4 154212449 154212595 -48115752 + MLT1J LTR MaLR 363 509 -2 341 333 178 51 chr4 154213362 154213485 -48114862 - L2 LINE L2 -1 3271 3165 2099 128 0 7 chr4 154213485 154213783 -48114564 + AluSx SINE Alu 5 300 -12 341 333 178 51 chr4 154213783 154214387 -48113960 - L2 LINE L2 -107 3165 2430 21 36 0 0 chr4 154214848 154214876 -48113471 + AT_rich Low_complexity Low_complexity 1 28 0 512 303 55 52 chr4 154215053 154215453 -48112894 + MLT1J2 LTR MaLR 27 427 -23 31 0 0 0 chr4 154216588 154216619 -48111728 + AT_rich Low_complexity Low_complexity 1 31 0 1067 31 0 0 chr4 154216619 154216746 -48111601 - L1PA3 LINE L1 -3 6152 6026 2256 105 0 3 chr4 154216928 154217223 -48111124 - AluSg SINE Alu -16 294 1 831 289 148 3 chr4 154218816 154219180 -48109167 + L2 LINE L2 2863 3279 -34 260 310 44 35 chr4 154219219 154219332 -48109015 + MIR SINE MIR 1 114 -148 252 313 0 0 chr4 154219413 154219480 -48108867 - MIR3 SINE MIR -54 154 88 746 271 68 0 chr4 154219553 154219833 -48108514 + L1ME4a LINE L1 5588 5886 -235 21 0 0 0 chr4 154219948 154219969 -48108378 + AT_rich Low_complexity Low_complexity 1 21 0 336 200 0 0 chr4 154221334 154221404 -48106943 + (TA)n Simple_repeat Simple_repeat 2 71 0 260 252 189 27 chr4 154221893 154222004 -48106343 + MIR SINE MIR 17 145 -63 405 0 0 0 chr4 154222328 154222373 -48105974 + (TG)n Simple_repeat Simple_repeat 1 45 0 213 39 0 0 chr4 154222372 154222398 -48105949 + (CG)n Simple_repeat Simple_repeat 2 27 0 * 1547 211 0 17 chr4 154222741 154223030 -48105317 + AluJo SINE Alu 5 288 -24 2213 101 0 0 chr4 154223038 154223324 -48105023 + AluSg SINE Alu 1 286 -24 349 307 201 11 chr4 154223482 154223671 -48104676 - MIR SINE MIR -13 249 25 350 354 95 6 chr4 154223717 154223875 -48104472 - MIR3 SINE MIR -3 205 34 689 178 304 16 chr4 154224030 154224277 -48104070 - MLT1F1 LTR MaLR -29 538 221 316 129 29 43 chr4 154224282 154224352 -48103995 - MLT1F1 LTR MaLR -494 73 5 3735 137 65 6 chr4 154224561 154225350 -48102997 + MER4D LTR ERV1 1 896 -7 752 285 11 25 chr4 154225397 154225671 -48102676 + MLT1L LTR MaLR 331 600 -15 267 255 38 78 chr4 154227981 154228141 -48100206 + MER5A DNA MER1_type 1 165 -24 771 213 101 5 chr4 154228382 154228570 -48099777 + MIR SINE MIR 12 217 -45 1361 179 11 15 chr4 154228573 154228889 -48099458 + MER61B LTR ERV1 1 400 -25 202 171 0 0 chr4 154228915 154228950 -48099397 + MIR SINE MIR 218 252 -10 202 276 17 0 chr4 154230516 154230574 -48097773 - MIR SINE MIR -8 254 196 22 0 0 0 chr4 154230682 154230704 -48097643 + AT_rich Low_complexity Low_complexity 1 22 0 22 103 0 0 chr4 154230817 154230895 -48097452 + AT_rich Low_complexity Low_complexity 1 78 0 3021 209 68 20 chr4 154231241 154232212 -48096135 + L1MCa LINE L1 1 948 -5097 1932 153 20 10 chr4 154232916 154233236 -48095111 + AluSg SINE Alu 1 310 0 603 291 56 0 chr4 154233953 154234149 -48094198 - MIR SINE MIR 0 262 56 249 108 0 0 chr4 154234237 154234274 -48094073 + (T)n Simple_repeat Simple_repeat 1 37 0 25 65 0 0 chr4 154234354 154234400 -48093947 + GC_rich Low_complexity Low_complexity 1 46 0 236 186 182 0 chr4 154236643 154236724 -48091623 + MIR SINE MIR 28 134 -74 2041 137 28 19 chr4 154236852 154237211 -48091136 + THE1C LTR MaLR 14 375 0 298 276 114 29 chr4 154237274 154237379 -48090968 - MER5A DNA MER1_type -7 182 69 261 365 50 17 chr4 154237791 154237953 -48090394 - L2 LINE L2 -8 3305 3135 1878 163 0 3 chr4 154237953 154238247 -48090100 + AluSx SINE Alu 1 293 -19 261 365 50 17 chr4 154238247 154238265 -48090082 - L2 LINE L2 -178 3135 3119 190 240 80 40 chr4 154238763 154238838 -48089509 - MIR SINE MIR -101 161 84 218 228 70 0 chr4 154238982 154239039 -48089308 + MIR SINE MIR 104 164 -98 3218 143 17 22 chr4 154239296 154239899 -48088448 + L1MB3 LINE L1 5593 6192 0 260 267 133 0 chr4 154239993 154240083 -48088264 + MIR SINE MIR 88 189 -73 347 107 0 54 chr4 154241392 154241448 -48086899 - AluJo SINE Alu -132 170 118 1053 98 0 0 chr4 154241464 154241597 -48086750 - AluSq/x SINE Alu -180 133 1 1898 135 0 7 chr4 154241598 154241895 -48086452 + MER1A DNA MER1_type 235 529 0 24 0 0 0 chr4 154242008 154242032 -48086315 + AT_rich Low_complexity Low_complexity 1 24 0 2422 207 19 42 chr4 154242045 154242382 -48085965 + L1MC3 LINE L1 2700 3043 -3103 1840 181 10 0 chr4 154242382 154242691 -48085656 + AluJb SINE Alu 1 312 0 2422 207 19 42 chr4 154242691 154243139 -48085208 + L1MC3 LINE L1 3043 3467 -2679 186 118 0 0 chr4 154243198 154243232 -48085115 + (GA)n Simple_repeat Simple_repeat 1 34 0 999 224 56 36 chr4 154243232 154243641 -48084706 - MLT2D LTR ERVL -48 416 1 2973 222 29 15 chr4 154243643 154244445 -48083902 + L1MC3 LINE L1 3464 4276 -1870 2187 136 7 0 chr4 154244488 154244790 -48083557 + AluSx SINE Alu 1 304 -8 5797 95 21 3 chr4 154244818 154245670 -48082677 + L1MA3 LINE L1 5436 6302 -3 10555 179 48 23 chr4 154245687 154248098 -48080249 + L1MC3 LINE L1 5319 6344 0 14235 120 11 7 chr4 154249003 154251075 -48077272 + Tigger1 DNA MER2_type 1 2083 -335 2249 115 0 3 chr4 154251075 154251379 -48076968 + AluSq SINE Alu 1 303 -10 14235 120 11 7 chr4 154251379 154251554 -48076793 + Tigger1 DNA MER2_type 2083 2256 -162 780 110 0 0 chr4 154251561 154251679 -48076668 - L1PB1 LINE L1 0 6151 6034 257 170 0 0 chr4 154251746 154251793 -48076554 + MER21A LTR ERV1 25 71 -860 532 101 38 0 chr4 154251822 154251901 -48076446 + MER21A LTR ERV1 833 914 -17 693 164 90 15 chr4 154251916 154252050 -48076297 + Tigger1 DNA MER2_type 2275 2418 0 900 133 6 63 chr4 154252330 154252488 -48075859 + AluJb SINE Alu 158 306 -6 373 283 43 29 chr4 154252517 154252655 -48075692 - L2 LINE L2 0 3313 3174 261 335 103 8 chr4 154252835 154252967 -48075380 - MIR SINE MIR -58 150 5 27467 39 4 3 chr4 154253206 154257525 -48070822 - L1PA4 LINE L1 0 6155 1832 36375 29 17 1 chr4 154257542 154263523 -48064824 + L1PA2 LINE L1 49 6155 0 315 0 0 0 chr4 154266110 154266145 -48062202 + (CA)n Simple_repeat Simple_repeat 2 36 0 13935 59 4 0 chr4 154266145 154267979 -48060368 - L1PA4 LINE L1 -4304 1842 1 23 0 0 0 chr4 154268626 154268649 -48059698 + AT_rich Low_complexity Low_complexity 1 23 0 302 278 358 0 chr4 154269173 154269335 -48059012 + MIR SINE MIR 38 257 -5 1381 172 8 0 chr4 154269370 154269608 -48058739 - Tigger4(Zombi) DNA MER2_type -2491 240 1 347 120 93 13 chr4 154269631 154269706 -48058641 + Tigger4(Zombi) DNA MER2_type 338 418 -2313 323 183 0 0 chr4 154269747 154269807 -48058540 + Tigger4(Zombi) DNA MER2_type 2668 2727 -4 356 240 90 70 chr4 154270335 154270647 -48057700 - HAL1b LINE L1 -58 1290 973 1426 298 28 16 chr4 154270674 154271251 -48057096 + L1MEc LINE L1 36 619 -5777 281 214 107 21 chr4 154271442 154271582 -48056765 - HAL1b LINE L1 -1108 240 89 1525 169 46 113 chr4 154271608 154271921 -48056426 - MLT1B LTR MaLR -2 388 123 738 126 0 0 chr4 154271921 154272032 -48056315 - L1PA16 LINE L1 -13 6153 6043 1525 169 46 113 chr4 154272032 154272148 -48056199 - MLT1B LTR MaLR -267 123 1 5575 213 70 40 chr4 154272608 154274556 -48053791 - L1MDa LINE L1 -4384 2156 38 2018 148 28 48 chr4 154274813 154275246 -48053101 - Tigger2a DNA MER2_type -2 432 9 840 207 89 10 chr4 154275446 154275649 -48052698 - MER20 DNA MER1_type 0 219 1 22 0 0 0 chr4 154276754 154276776 -48051571 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 154276951 154276981 -48051366 + AT_rich Low_complexity Low_complexity 1 30 0 223 323 56 45 chr4 154277313 154277511 -48050836 + L2 LINE L2 2836 3035 -237 210 238 0 0 chr4 154277889 154277931 -48050416 - MIR SINE MIR -173 89 48 234 91 0 0 chr4 154278052 154278085 -48050262 + (A)n Simple_repeat Simple_repeat 1 33 0 311 65 22 0 chr4 154278653 154278699 -48049648 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 925 323 10 3 chr4 154278700 154279000 -48049347 - LTR16B LTR ERVL -155 309 8 198 0 0 0 chr4 154279080 154279102 -48049245 + (CA)n Simple_repeat Simple_repeat 2 23 0 816 264 161 55 chr4 154279103 154279630 -48048717 + HAL1 LINE L1 117 763 -1744 1443 128 35 23 chr4 154279630 154279888 -48048459 + L1PA13 LINE L1 5902 6162 -1 816 264 161 55 chr4 154279888 154280179 -48048168 + HAL1 LINE L1 763 1022 -1485 1758 167 19 115 chr4 154280191 154280653 -48047694 - MER47B DNA MER2_type 0 418 1 972 173 49 16 chr4 154280724 154280909 -48047438 + AluJb SINE Alu 121 311 -1 22 35 0 0 chr4 154280982 154281011 -48047336 + AT_rich Low_complexity Low_complexity 1 29 0 242 93 23 0 chr4 154281016 154281059 -48047288 - MADE1 DNA Mariner 0 80 37 1750 242 94 63 chr4 154281064 154282125 -48046222 + HAL1 LINE L1 1329 2422 -85 373 319 26 21 chr4 154282195 154282386 -48045961 + HAL1b LINE L1 413 604 -744 449 322 84 19 chr4 154282408 154282622 -48045725 + HAL1b LINE L1 658 885 -463 30 0 0 0 chr4 154282979 154283009 -48045338 + AT_rich Low_complexity Low_complexity 1 30 0 564 322 111 10 chr4 154283291 154283499 -48044848 + MIR SINE MIR 34 262 0 395 273 71 32 chr4 154283753 154284006 -48044341 + L1M4 LINE L1 3520 3782 -2364 1068 305 94 58 chr4 154284020 154284541 -48043806 + L1M4 LINE L1 3831 4332 -1814 2872 181 85 42 chr4 154284541 154285296 -48043051 + LTR48 LTR ERV1 1 787 0 1068 305 94 58 chr4 154285296 154285345 -48043002 + L1M4 LINE L1 4332 4378 -1768 2337 107 0 0 chr4 154285345 154285644 -48042703 - AluSg SINE Alu -11 299 1 1068 305 94 58 chr4 154285644 154285836 -48042511 + L1M4 LINE L1 4378 4562 -1584 2911 6 0 0 chr4 154285836 154286150 -48042197 + AluYb8 SINE Alu 1 314 -4 1068 305 94 58 chr4 154286150 154286278 -48042069 + L1M4 LINE L1 4562 4684 -1462 649 240 0 0 chr4 154286278 154286403 -48041944 + FLAM_A SINE Alu 1 125 -8 1068 305 94 58 chr4 154286403 154286534 -48041813 + L1M4 LINE L1 4684 4892 -1254 489 183 32 0 chr4 154286549 154286642 -48041705 + MLT1D LTR MaLR 1 96 -409 4123 140 13 13 chr4 154286654 154287352 -48040995 - L1MB3 LINE L1 -2 6181 5484 648 195 0 0 chr4 154287403 154287531 -48040816 + MLT1D LTR MaLR 377 504 -1 16267 71 4 7 chr4 154287532 154289836 -48038511 - L1P LINE L1 -2524 3622 1325 10099 68 9 0 chr4 154289837 154291935 -48036412 + L1PA6 LINE L1 4033 6143 -11 304 202 149 0 chr4 154291943 154292037 -48036310 + L1ME LINE L1 5716 5823 -298 26 30 0 0 chr4 154292390 154292423 -48035924 + AT_rich Low_complexity Low_complexity 1 33 0 490 296 82 7 chr4 154292599 154292734 -48035613 + L2 LINE L2 3128 3272 0 490 204 19 0 chr4 154293324 154293443 -48034904 + MLT1J2 LTR MaLR 7 128 -319 24 32 0 0 chr4 154293585 154293616 -48034731 + AT_rich Low_complexity Low_complexity 1 31 0 619 262 97 44 chr4 154294598 154295010 -48033337 - L1ME4a LINE L1 -113 6008 5575 375 147 0 0 chr4 154295781 154295849 -48032498 + AluJ/FLAM SINE Alu 1 68 -234 1643 131 0 0 chr4 154295892 154296121 -48032226 + AluSg/x SINE Alu 69 297 -15 426 317 93 27 chr4 154296309 154296609 -48031738 - L1ME4a LINE L1 -199 5922 5603 188 333 0 0 chr4 154296913 154296970 -48031377 + L2 LINE L2 3257 3313 0 184 188 31 0 chr4 154297008 154297040 -48031307 + MIR SINE MIR 50 82 -180 2338 81 0 19 chr4 154297236 154297543 -48030804 - AluY SINE Alu -10 301 1 335 111 0 0 chr4 154298532 154298586 -48029761 - MLT2B1 LTR ERVL -6 514 461 22 0 0 0 chr4 154298669 154298691 -48029656 + AT_rich Low_complexity Low_complexity 1 22 0 444 148 11 23 chr4 154298707 154298795 -48029552 - MLT2C1 LTR ERVL -48 349 263 623 171 93 0 chr4 154298805 154298934 -48029413 - MLT2C1 LTR ERVL -243 154 14 220 274 0 0 chr4 154299172 154299245 -48029102 + T-rich Low_complexity Low_complexity 1 73 0 535 317 88 20 chr4 154299246 154299399 -48028948 + L2 LINE L2 2461 2602 -712 2237 105 0 0 chr4 154299399 154299694 -48028653 + AluY SINE Alu 1 295 -16 535 317 88 20 chr4 154299694 154299846 -48028501 + L2 LINE L2 2602 2787 -527 1665 196 2 66 chr4 154299848 154300256 -48028091 + MLT1B LTR MaLR 3 384 -6 796 314 49 38 chr4 154300256 154300775 -48027572 + L2 LINE L2 2777 3301 -12 772 164 0 8 chr4 154300924 154301058 -48027289 - FLAM_C SINE Alu 0 133 1 1788 77 0 0 chr4 154301084 154301304 -48027043 - AluY SINE Alu -11 300 81 424 259 28 56 chr4 154301678 154301821 -48026526 - MER5A DNA MER1_type -1 188 50 278 322 58 0 chr4 154302392 154302479 -48025868 + L2 LINE L2 3196 3287 -26 23 0 0 0 chr4 154302767 154302790 -48025557 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 154303345 154303367 -48024980 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 154303777 154303807 -48024540 + AT_rich Low_complexity Low_complexity 1 30 0 2028 119 0 3 chr4 154304356 154304677 -48023670 - AluSx SINE Alu 0 320 1 1509 185 72 10 chr4 154305266 154305558 -48022789 + AluJo SINE Alu 1 310 -2 737 163 28 16 chr4 154305582 154305834 -48022513 + GA-rich Low_complexity Low_complexity 1 255 0 473 296 56 21 chr4 154306049 154306191 -48022156 + MIR SINE MIR 2 148 -114 1859 180 6 12 chr4 154306193 154306532 -48021815 - MER2 DNA MER2_type -2 343 7 324 270 34 0 chr4 154306536 154306625 -48021722 + MIR SINE MIR 156 247 -15 305 230 171 45 chr4 154307425 154307559 -48020788 + MIR SINE MIR 15 131 -131 1485 184 96 26 chr4 154307559 154307946 -48020401 - LTR52 LTR ERVL -3 418 5 305 230 171 45 chr4 154307946 154307976 -48020371 + MIR SINE MIR 131 249 -13 1644 248 19 24 chr4 154308525 154308807 -48019540 - L1ME1 LINE L1 -4 6398 6117 2209 216 89 15 chr4 154308807 154309390 -48018957 - MLT1E2 LTR MaLR 0 626 1 1644 248 19 24 chr4 154309390 154309574 -48018773 - L1ME1 LINE L1 -285 6117 5934 579 243 124 31 chr4 154309574 154309800 -48018547 + LTR48 LTR ERV1 1 247 -540 574 231 71 71 chr4 154309793 154310061 -48018286 + LTR48 LTR ERV1 471 738 -49 * 1528 198 38 94 chr4 154310113 154310911 -48017436 - L1ME1 LINE L1 -463 5939 5178 2529 132 25 28 chr4 154310956 154311388 -48016959 - Tigger2a DNA MER2_type 0 434 4 1770 234 64 38 chr4 154311402 154311522 -48016825 - L1ME1 LINE L1 -3574 2808 2693 1694 205 40 0 chr4 154311522 154311873 -48016474 + MLT1A1 LTR MaLR 1 365 0 1770 234 64 38 chr4 154311873 154311916 -48016431 - L1ME1 LINE L1 -3689 2693 2653 1784 158 7 4 chr4 154311916 154312194 -48016153 - AluJb SINE Alu -11 301 23 1770 234 64 38 chr4 154312194 154313037 -48015310 - L1ME1 LINE L1 -3729 2653 1829 861 204 70 131 chr4 154313126 154313144 -48015203 + MLT1A2 LTR MaLR 1 19 -355 198 0 0 0 chr4 154313144 154313166 -48015181 + (CA)n Simple_repeat Simple_repeat 2 23 0 861 204 70 131 chr4 154313166 154313352 -48014995 + MLT1A2 LTR MaLR 19 172 -202 297 0 0 0 chr4 154313352 154313385 -48014962 + (TG)n Simple_repeat Simple_repeat 2 34 0 861 204 70 131 chr4 154313385 154313577 -48014770 + MLT1A2 LTR MaLR 172 374 0 284 254 42 78 chr4 154313591 154313848 -48014499 - L1ME1 LINE L1 -4909 1475 1250 763 184 0 0 chr4 154313849 154313985 -48014362 + AluJb SINE Alu 1 136 -176 1927 164 13 7 chr4 154314506 154314816 -48013531 + AluSx SINE Alu 1 312 0 189 259 99 37 chr4 154314992 154315073 -48013274 + L2 LINE L2 3227 3312 -1 209 83 28 0 chr4 154316169 154316205 -48012142 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 961 85 14 7 chr4 154316205 154316346 -48012001 - MER107 DNA MER1_type -52 145 4 254 258 86 0 chr4 154317342 154317435 -48010912 + MARNA DNA Mariner 313 413 -173 370 320 127 25 chr4 154317600 154317797 -48010550 + MIR SINE MIR 1 217 -45 5718 220 73 42 chr4 154318512 154319425 -48008922 - L1ME1 LINE L1 -5 6230 5347 2216 187 74 17 chr4 154319425 154319900 -48008447 + MLT1D LTR MaLR 1 502 -3 5718 220 73 42 chr4 154319900 154321486 -48006861 - L1ME1 LINE L1 -888 5347 3639 536 258 73 0 chr4 154321529 154321762 -48006585 - L1ME1 LINE L1 -2659 3556 3307 * 3394 240 108 21 chr4 154321751 154323025 -48005322 - L1ME1 LINE L1 -4992 1404 20 289 253 0 89 chr4 154323139 154323218 -48005129 + L2 LINE L2 3186 3257 -15 237 292 31 46 chr4 154323392 154323522 -48004825 - MLT1K LTR MaLR -248 340 213 375 333 70 45 chr4 154325762 154326074 -48002273 + L1MC4a LINE L1 5777 6096 -1712 212 229 114 14 chr4 154326131 154326201 -48002146 - MER5A DNA MER1_type -57 132 56 200 198 105 70 chr4 154326160 154326246 -48002101 + MER5A DNA MER1_type 101 189 0 * 372 167 0 0 chr4 154326435 154326495 -48001852 - Tigger1 DNA MER2_type 0 2418 2359 390 183 0 0 chr4 154326824 154326895 -48001452 + LTR16B LTR ERVL 394 464 0 385 374 47 3 chr4 154327110 154327407 -48000940 + MERVL LTR ERVL 4452 4761 -724 1361 99 50 10 chr4 154327860 154327886 -48000461 + AluSg/x SINE Alu 97 121 -191 351 0 0 0 chr4 154327886 154327925 -48000422 + (CA)n Simple_repeat Simple_repeat 2 40 0 1361 99 50 10 chr4 154327925 154328100 -48000247 + AluSg/x SINE Alu 121 306 -6 1566 156 25 121 chr4 154328808 154329239 -47999108 + MLT1B LTR MaLR 1 390 0 373 134 278 0 chr4 154329413 154329510 -47998837 + MER69 DNA AcHobo 1460 1583 -943 5884 77 1 51 chr4 154329517 154329742 -47998605 + L1PA13 LINE L1 5285 5520 -643 1972 141 0 44 chr4 154329742 154330040 -47998307 + AluSx SINE Alu 9 293 -19 5884 77 1 51 chr4 154330040 154330241 -47998106 + L1PA13 LINE L1 5520 5730 -433 2163 122 0 0 chr4 154330241 154330535 -47997812 + AluSq SINE Alu 1 294 -19 5884 77 1 51 chr4 154330535 154331027 -47997320 + L1PA13 LINE L1 5729 6158 -5 22 0 0 0 chr4 154331027 154331049 -47997298 + AT_rich Low_complexity Low_complexity 1 22 0 1586 206 41 29 chr4 154331089 154331575 -47996772 + MER69 DNA AcHobo 1631 2122 -404 376 242 106 69 chr4 154331578 154332156 -47996191 + L1M4 LINE L1 2849 3447 -2699 1799 283 86 27 chr4 154332273 154332690 -47995657 + L1M4 LINE L1 3614 4005 -2141 569 199 7 73 chr4 154332690 154332826 -47995521 + FLAM_A SINE Alu 1 127 -6 1799 283 86 27 chr4 154332826 154333672 -47994675 + L1M4 LINE L1 4005 4963 -1183 1823 174 36 39 chr4 154333672 154334058 -47994289 - MLT1B LTR MaLR -3 387 3 1799 283 86 27 chr4 154334058 154334138 -47994209 + L1M4 LINE L1 4963 5037 -1109 3195 250 60 33 chr4 154334145 154335342 -47993005 + L1MEc LINE L1 105 1333 -5063 2068 141 0 7 chr4 154335391 154335696 -47992651 - AluSx SINE Alu -9 303 1 494 317 8 66 chr4 154335929 154336095 -47992252 - MIR3 SINE MIR -41 167 11 1772 195 63 31 chr4 154336334 154336779 -47991568 + Charlie1b DNA MER1_type 30 492 -2269 2203 105 0 7 chr4 154336779 154337073 -47991274 + AluSg SINE Alu 1 292 -18 1772 195 63 31 chr4 154337073 154337105 -47991242 + Charlie1b DNA MER1_type 492 522 -1 263 318 61 89 chr4 154337105 154337385 -47990962 - L2 LINE L2 -501 2813 2542 24 0 0 0 chr4 154338138 154338162 -47990185 + GC_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr4 154338422 154338455 -47989892 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr4 154338576 154338599 -47989748 + AT_rich Low_complexity Low_complexity 1 23 0 297 176 35 106 chr4 154338781 154338866 -47989481 + MIR SINE MIR 183 261 -1 21 57 0 0 chr4 154338877 154338912 -47989435 + AT_rich Low_complexity Low_complexity 1 35 0 842 196 92 32 chr4 154339270 154339520 -47988827 + L1MD3 LINE L1 7730 7994 -1 281 278 247 0 chr4 154341117 154341214 -47987133 + L2 LINE L2 3188 3308 -5 2251 129 3 0 chr4 154342129 154342438 -47985909 + AluSx SINE Alu 3 312 0 919 233 0 0 chr4 154342474 154342650 -47985697 - FRAM SINE Alu -3 173 1 1534 175 80 15 chr4 154342946 154343220 -47985127 + AluJo SINE Alu 2 293 -19 380 116 0 14 chr4 154343247 154343316 -47985031 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 645 271 12 7 chr4 154343337 154343563 -47984784 - L1MC5 LINE L1 -1021 6793 6559 1315 124 5 0 chr4 154343676 154343869 -47984478 - Tigger3b DNA MER2_type 0 1232 1039 2147 134 0 7 chr4 154345183 154345489 -47982858 - AluSx SINE Alu -8 304 1 23 54 0 0 chr4 154345498 154345535 -47982812 + AT_rich Low_complexity Low_complexity 1 37 0 32684 70 12 3 chr4 154345698 154350224 -47978123 + L1PA5 LINE L1 11 4578 -1568 6203 59 1 8 chr4 154350224 154351014 -47977333 + L1PA5 LINE L1 5362 6152 -2 185 291 25 38 chr4 154351287 154351366 -47976981 + MER5A DNA MER1_type 112 189 0 2022 128 0 0 chr4 154351411 154351684 -47976663 - AluSx SINE Alu -39 273 1 5323 120 46 13 chr4 154352433 154353349 -47974998 - Tigger3b DNA MER2_type -285 946 1 2362 80 0 10 chr4 154353478 154353777 -47974570 - AluSg1 SINE Alu -12 297 2 1893 113 0 8 chr4 154353778 154354026 -47974321 - AluSc SINE Alu -12 297 52 628 269 143 10 chr4 154354135 154354526 -47973821 - L1MC4a LINE L1 -1643 6165 5723 194 379 32 24 chr4 154354535 154354659 -47973688 - L2 LINE L2 -1308 2006 1882 309 375 31 16 chr4 154354700 154354892 -47973455 - L2 LINE L2 -1421 1893 1699 382 292 113 36 chr4 154355128 154355323 -47973024 + L2 LINE L2 3104 3313 0 1157 209 79 8 chr4 154355550 154355804 -47972543 + AluJo SINE Alu 30 301 -11 798 213 38 0 chr4 154356201 154356361 -47971986 - FRAM SINE Alu 0 166 1 692 195 67 67 chr4 154357405 154357615 -47970732 + MER63A DNA MER1_type 1 210 0 229 244 73 24 chr4 154357691 154357773 -47970574 + MLT1J LTR MaLR 100 185 -326 345 233 16 54 chr4 154358051 154358180 -47970167 + MLT1J LTR MaLR 378 501 -10 197 322 17 0 chr4 154358380 154358439 -47969908 - MIR SINE MIR -11 251 192 863 194 38 27 chr4 154358440 154358626 -47969721 + MIR SINE MIR 75 262 0 5631 100 13 17 chr4 154358839 154359198 -47969149 - L1PB1 LINE L1 -4 6147 5788 459 0 0 0 chr4 154359198 154359249 -47969098 + (CA)n Simple_repeat Simple_repeat 2 52 0 369 0 0 0 chr4 154359248 154359289 -47969058 + (TA)n Simple_repeat Simple_repeat 2 42 0 * 5631 100 13 17 chr4 154359249 154359291 -47969056 - L1PB1 LINE L1 -363 5788 5747 2078 123 3 7 chr4 154359291 154359584 -47968763 - AluSx SINE Alu -20 292 1 5631 100 13 17 chr4 154359584 154360181 -47968166 - L1PB1 LINE L1 -404 5747 5190 1801 161 143 13 chr4 154360503 154360882 -47967465 - MSTA LTR MaLR 0 428 1 9408 140 6 48 chr4 154360882 154362530 -47965817 - MSTA-int LTR MaLR 0 1580 3 1967 134 139 16 chr4 154362532 154362913 -47965434 - MSTA LTR MaLR 0 428 1 275 274 65 32 chr4 154363166 154363290 -47965057 - L2 LINE L2 0 3272 3145 1857 139 43 4 chr4 154363405 154363685 -47964662 - AluJb SINE Alu -21 291 1 1659 259 126 57 chr4 154363949 154364413 -47963934 + L2 LINE L2 723 1153 -2160 2165 94 0 66 chr4 154364413 154364733 -47963614 + AluSx SINE Alu 1 299 -13 1659 259 126 57 chr4 154364733 154365305 -47963042 + L2 LINE L2 1153 1684 -1629 2167 90 0 35 chr4 154365305 154365625 -47962722 - AluSg SINE Alu 0 310 1 1659 259 126 57 chr4 154365625 154365738 -47962609 + L2 LINE L2 1684 3298 -15 456 266 9 9 chr4 154365715 154365824 -47962523 - L2 LINE L2 0 3313 3205 * 373 205 0 0 chr4 154365835 154365913 -47962434 - L2 LINE L2 -281 3032 2955 645 157 9 0 chr4 154365913 154366020 -47962327 + MSTD LTR MaLR 1 108 -288 278 75 0 0 chr4 154366020 154366060 -47962287 + MER57A LTR ERV1 1 40 -363 247 148 0 0 chr4 154366078 154366132 -47962215 - L1MC4 LINE L1 -1341 6701 6648 1322 84 0 0 chr4 154366135 154366301 -47962046 - AluSp SINE Alu -11 302 137 2169 152 14 0 chr4 154366301 154366669 -47961678 + MER57A LTR ERV1 31 403 0 1182 202 17 53 chr4 154366669 154366932 -47961415 + MSTD LTR MaLR 105 357 -39 2446 117 3 32 chr4 154366932 154367006 -47961341 - THE1B LTR MaLR 0 364 289 2121 125 0 17 chr4 154367006 154367303 -47961044 + AluSx SINE Alu 1 292 -20 2446 117 3 32 chr4 154367303 154367603 -47960744 - THE1B LTR MaLR -75 289 1 1182 202 17 53 chr4 154367603 154367640 -47960707 + MSTD LTR MaLR 357 394 -2 648 248 61 28 chr4 154367644 154367858 -47960489 - L2 LINE L2 -358 2956 2736 23 33 0 0 chr4 154367858 154367888 -47960459 + AT_rich Low_complexity Low_complexity 1 30 0 1986 107 52 0 chr4 154368070 154368342 -47960005 + AluSx SINE Alu 1 286 -26 234 216 20 0 chr4 154368415 154368466 -47959881 - L1MC4 LINE L1 -368 7674 7623 * 1618 155 85 21 chr4 154368463 154368851 -47959496 - L1MB8 LINE L1 0 6178 5766 245 242 15 0 chr4 154368854 154368920 -47959427 - L2 LINE L2 -569 2745 2679 * 402 215 0 0 chr4 154368917 154368996 -47959351 - L2 LINE L2 -1311 2003 1925 362 306 122 36 chr4 154369780 154370002 -47958345 - L1M2 LINE L1 -5486 1363 1123 357 307 94 87 chr4 154370368 154370814 -47957533 + L1M2 LINE L1 822 1270 -5579 775 188 72 17 chr4 154373197 154373211 -47955136 - MER3 DNA MER1_type -18 191 179 1988 125 3 38 chr4 154373211 154373531 -47954816 - AluJb SINE Alu -3 309 1 775 188 72 17 chr4 154373531 154373697 -47954650 - MER3 DNA MER1_type -30 179 1 501 244 96 74 chr4 154373951 154374180 -47954167 - MIR SINE MIR -14 248 15 262 358 73 13 chr4 154374866 154375017 -47953330 - MIR3 SINE MIR -13 195 36 252 0 0 0 chr4 154376632 154376660 -47951687 + (TG)n Simple_repeat Simple_repeat 1 28 0 432 139 76 0 chr4 154377189 154377268 -47951079 + MER3 DNA MER1_type 1 85 -124 22 0 0 0 chr4 154377274 154377296 -47951051 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr4 154377616 154377647 -47950700 + AT_rich Low_complexity Low_complexity 1 31 0 290 325 0 0 chr4 154378720 154378803 -47949544 + MIR SINE MIR 6 88 -174 1040 130 14 0 chr4 154379457 154379603 -47948744 + FRAM SINE Alu 18 165 -11 3684 172 132 7 chr4 154380254 154381017 -47947330 - MER21B LTR ERV1 -4 859 1 214 336 96 40 chr4 154381880 154382005 -47946342 - L2 LINE L2 0 3272 3141 2239 87 0 0 chr4 154382127 154382415 -47945932 - AluSg SINE Alu -22 288 1 192 222 111 56 chr4 154382699 154382771 -47945576 - MER5B DNA MER1_type 0 178 103 185 268 0 84 chr4 154382806 154382877 -47945470 + L2 LINE L2 3237 3301 -12 481 148 9 78 chr4 154383237 154383352 -47944995 + MER20 DNA MER1_type 42 148 -71 1594 189 37 10 chr4 154383767 154384063 -47944284 - AluJo SINE Alu -6 306 3 436 222 96 44 chr4 154384462 154384597 -47943750 + MIR SINE MIR 85 226 -36 1085 200 17 29 chr4 154384666 154384906 -47943441 - MER8 DNA MER2_type -1 238 2 212 271 0 34 chr4 154386576 154386635 -47941712 - L3 LINE CR1 -232 1345 1289 248 241 96 24 chr4 154386958 154387041 -47941306 - L1ME LINE L1 -299 5822 5734 646 284 234 28 chr4 154387080 154387333 -47941014 + L2 LINE L2 369 569 -2745 1910 135 62 6 chr4 154387333 154387497 -47940850 + MER46B DNA MER2_type 2 71 -2660 1823 152 28 0 chr4 154387497 154387787 -47940560 + AluJb SINE Alu 1 298 -14 1910 135 62 6 chr4 154387787 154387963 -47940384 + MER46B DNA MER2_type 71 236 0 646 284 234 28 chr4 154387963 154388064 -47940283 + L2 LINE L2 569 796 -2518 1306 213 86 62 chr4 154388215 154388730 -47939617 + L2 LINE L2 2517 3059 -254 301 213 87 134 chr4 154388730 154388857 -47939490 + L2 LINE L2 3193 3313 0 384 333 58 22 chr4 154389903 154390128 -47938219 + MIR SINE MIR 28 260 -2 3458 128 27 2 chr4 154391796 154392358 -47935989 + MER6A DNA MER2_type 1 576 -29 1334 86 11 0 chr4 154393615 154393790 -47934557 + AluY SINE Alu 122 298 -13 750 124 0 0 chr4 154394102 154394207 -47934140 - AluJb SINE Alu -207 105 1 1880 138 3 62 chr4 154394455 154394809 -47933538 - L1M3 LINE L1 -435 5736 5404 1074 232 116 9 chr4 154394809 154395128 -47933219 + MSTD LTR MaLR 1 353 -43 8301 123 21 16 chr4 154395228 154396573 -47931774 + Tigger2 DNA MER2_type 1368 2718 0 318 167 0 0 chr4 154396592 154396646 -47931701 - MSTB2 LTR MaLR 0 457 404 1184 139 17 0 chr4 154396747 154396920 -47931427 - AluSx SINE Alu -136 176 1 604 267 51 28 chr4 154398171 154398426 -47929921 - L1ME4a LINE L1 -266 5855 5595 788 258 19 72 chr4 154399102 154399366 -47928981 + MIR SINE MIR 13 262 0 1709 153 129 15 chr4 154399468 154399794 -47928553 - MLT1A1 LTR MaLR 0 365 3 478 267 74 15 chr4 154400024 154400159 -47928188 + L2 LINE L2 3127 3269 -3 276 313 0 0 chr4 154400706 154400770 -47927577 - L2 LINE L2 -6 3266 3203 28 0 0 0 chr4 154400874 154400902 -47927445 + AT_rich Low_complexity Low_complexity 1 28 0 1498 247 136 26 chr4 154401071 154402135 -47926212 - L1ME LINE L1 -2885 3195 2051 1273 193 53 4 chr4 154402174 154402439 -47925908 - AluJo SINE Alu -13 299 22 1107 292 114 23 chr4 154402451 154403765 -47924582 - L1ME LINE L1 -4256 2005 529 180 125 0 0 chr4 154404198 154404230 -47924117 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 531 227 13 65 chr4 154404767 154404852 -47923495 + MIR SINE MIR 113 188 -74 1325 232 38 38 chr4 154404852 154405222 -47923125 - MLT1A2 LTR MaLR -4 370 1 531 227 13 65 chr4 154405222 154405290 -47923057 + MIR SINE MIR 188 258 -4 417 20 0 0 chr4 154406028 154406078 -47922269 + (TG)n Simple_repeat Simple_repeat 1 50 0 21 71 0 0 chr4 154406194 154406236 -47922111 + AT_rich Low_complexity Low_complexity 1 42 0 276 262 119 12 chr4 154406739 154406823 -47921524 - MER5A DNA MER1_type -66 123 31 311 274 68 53 chr4 154406957 154407147 -47921200 - L1ME3A LINE L1 -88 6082 5890 227 271 86 86 chr4 154407658 154407798 -47920549 - MIR SINE MIR -27 235 96 253 255 20 69 chr4 154408391 154408493 -47919854 + L2 LINE L2 3169 3265 -48 999 202 0 17 chr4 154409014 154409192 -47919155 + FAM SINE Alu 1 175 0 1508 116 0 0 chr4 154409194 154409401 -47918946 + AluSq SINE Alu 95 301 -12 427 181 0 0 chr4 154409704 154409776 -47918571 + MER5A DNA MER1_type 2 73 -116 671 119 25 8 chr4 154409777 154409895 -47918452 - L1MA7 LINE L1 -2 6289 6170 183 156 0 0 chr4 154409908 154409940 -47918407 + T-rich Low_complexity Low_complexity 1 32 0 2418 98 0 0 chr4 154409982 154410289 -47918058 - AluSx SINE Alu -5 307 1 972 175 76 66 chr4 154410349 154410560 -47917787 + AluJo SINE Alu 85 297 -15 1605 101 85 43 chr4 154410561 154410889 -47917458 - L1MA7 LINE L1 -157 6134 5793 1291 180 38 9 chr4 154410892 154411231 -47917116 + L1MA7 LINE L1 5386 5765 -418 629 176 30 38 chr4 154411233 154411364 -47916983 + MER5A DNA MER1_type 60 189 0 1051 177 69 31 chr4 154412511 154412799 -47915548 + L1MD1 LINE L1 5944 6242 0 356 143 130 0 chr4 154412834 154412911 -47915436 - Charlie1 DNA MER1_type -1073 1688 1602 2217 55 41 14 chr4 154412919 154413211 -47915136 + AluY SINE Alu 1 300 -11 822 75 9 0 chr4 154413215 154413322 -47915025 + AluSp SINE Alu 3 110 -203 914 174 12 24 chr4 154413849 154414016 -47914331 - FRAM SINE Alu 0 166 2 267 133 0 0 chr4 154415563 154415608 -47912739 + (GGCTG)n Simple_repeat Simple_repeat 3 47 0 561 174 184 45 chr4 154416493 154416694 -47911653 + L1MC4 LINE L1 6915 7143 -899 367 271 112 43 chr4 154416750 154416938 -47911409 + MIR SINE MIR 12 212 -50 22 56 0 0 chr4 154417077 154417113 -47911234 + AT_rich Low_complexity Low_complexity 1 36 0 471 252 151 64 chr4 154417125 154417178 -47911169 - MIR SINE MIR -24 238 191 2685 17 0 0 chr4 154417178 154417476 -47910871 - AluYa5 SINE Alu -13 298 1 471 252 151 64 chr4 154417476 154417640 -47910707 - MIR SINE MIR -71 191 2 1800 123 0 83 chr4 154417817 154418001 -47910346 - AluSx SINE Alu -15 297 150 2190 118 0 19 chr4 154418001 154418014 -47910333 - AluSg SINE Alu -3 307 295 366 23 0 0 chr4 154418014 154418057 -47910290 + (CA)n Simple_repeat Simple_repeat 2 44 0 2190 118 0 19 chr4 154418057 154418356 -47909991 - AluSg SINE Alu -15 295 1 1800 123 0 83 chr4 154418356 154418495 -47909852 - AluSx SINE Alu -162 150 1 580 309 85 9 chr4 154418761 154418984 -47909363 + MIR SINE MIR 1 240 -22 183 218 172 11 chr4 154419013 154419100 -47909247 - MIR SINE MIR -96 166 66 225 254 75 15 chr4 154419711 154419778 -47908569 - MIR SINE MIR -111 97 27 274 340 38 9 chr4 154419830 154419936 -47908411 - MER5A DNA MER1_type -80 109 1 191 250 0 0 chr4 154419995 154420039 -47908308 - L2 LINE L2 -8 3305 3262 369 255 75 0 chr4 154420789 154420895 -47907452 + MIR SINE MIR 36 149 -113 225 308 64 0 chr4 154420932 154421010 -47907337 + L2 LINE L2 3170 3252 -20 461 273 56 6 chr4 154421543 154421717 -47906630 - MIR3 SINE MIR -7 201 14 443 248 26 8 chr4 154423226 154423343 -47905004 + MER94 DNA DNA 16 134 0 1831 138 7 36 chr4 154423362 154423666 -47904681 + AluJo SINE Alu 5 299 -13 1805 173 23 18 chr4 154423833 154424221 -47904126 + MLT1B LTR MaLR 1 390 0 510 295 85 40 chr4 154424285 154424862 -47903485 + L1MC4 LINE L1 4538 5140 -1006 3637 233 96 37 chr4 154424985 154427469 -47900878 + L1MC4 LINE L1 5317 7993 -2 387 113 99 0 chr4 154427831 154427902 -47900445 + MADE1 DNA Mariner 1 78 -2 2327 85 27 3 chr4 154432927 154433222 -47895125 - AluSx SINE Alu -10 302 1 1258 189 35 25 chr4 154433957 154434242 -47894105 + L1MC1 LINE L1 6046 6333 0 2356 94 0 3 chr4 154434253 154434560 -47893787 + AluSq SINE Alu 1 306 -7 963 243 67 0 chr4 154435053 154435263 -47893084 + MER58A DNA MER1_type 1 224 0 192 40 0 0 chr4 154435514 154435539 -47892808 + (TG)n Simple_repeat Simple_repeat 2 26 0 471 181 48 0 chr4 154437290 154437395 -47890952 + L1M1 LINE L1 25 134 -7431 3021 239 81 70 chr4 154437489 154438158 -47890189 + L1MC4 LINE L1 6327 6987 -1055 1804 147 11 14 chr4 154438158 154438485 -47889862 - AluSx SINE Alu 0 326 1 3021 239 81 70 chr4 154438485 154439321 -47889026 + L1MC4 LINE L1 6987 7850 -192 289 206 8 107 chr4 154439466 154439597 -47888750 + L1MC4 LINE L1 7924 8041 -1 1720 154 4 4 chr4 154440210 154440476 -47887871 + AluSx SINE Alu 25 290 -22 225 222 37 0 chr4 154440530 154440584 -47887763 - L1MC/D LINE L1 -2256 5552 5497 525 310 157 53 chr4 154440688 154441492 -47886855 + L1ME LINE L1 4340 5226 -920 467 264 157 22 chr4 154441523 154441873 -47886474 + L1ME LINE L1 5286 5681 -440 1568 164 21 35 chr4 154442848 154443166 -47885181 - AluJb SINE Alu 0 314 1 2204 130 27 9 chr4 154443266 154443597 -47884750 - MER1B DNA MER1_type 0 337 1 257 70 47 0 chr4 154445021 154445064 -47883283 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 293 286 87 16 chr4 154445310 154445436 -47882911 + MIR3 SINE MIR 20 154 -54 225 281 0 0 chr4 154446306 154446370 -47881977 + (TA)n Simple_repeat Simple_repeat 1 64 0 1767 123 11 8 chr4 154446405 154446665 -47881682 - AluSx SINE Alu -2 310 50 1810 137 48 0 chr4 154446665 154446934 -47881413 - AluSx SINE Alu -29 283 1 287 316 10 20 chr4 154449895 154449993 -47878354 + MIR SINE MIR 88 184 -78 534 271 67 2 chr4 154450506 154450682 -47877665 + MIR SINE MIR 32 217 -45 2494 84 3 0 chr4 154450993 154451304 -47877043 - AluSp SINE Alu 0 313 2 338 308 46 23 chr4 154451313 154451443 -47876904 - MIR SINE MIR -122 140 8 469 337 154 15 chr4 154452410 154452805 -47875542 - L2 LINE L2 -15 3257 2808 302 289 160 31 chr4 154452846 154453140 -47875207 - L2 LINE L2 -1168 2146 1815 913 138 0 0 chr4 154453149 154453272 -47875075 - FLAM_C SINE Alu -20 123 1 235 247 235 0 chr4 154453993 154454078 -47874269 + L2 LINE L2 3168 3272 0 1910 142 18 0 chr4 154454994 154455269 -47873078 + AluSx SINE Alu 1 280 -32 204 40 0 0 chr4 154455270 154455295 -47873052 + (GAAAA)n Simple_repeat Simple_repeat 3 27 0 17174 178 29 23 chr4 154455689 154456983 -47871364 + L1PA13 LINE L1 1 1286 -5528 288 0 0 0 chr4 154456983 154457015 -47871332 + (CTG)n Simple_repeat Simple_repeat 1 32 0 17174 178 29 23 chr4 154457015 154462058 -47866289 + L1PA13 LINE L1 1286 6416 -398 2100 141 39 30 chr4 154462058 154462419 -47865928 - THE1B LTR MaLR 0 364 1 17174 178 29 23 chr4 154462419 154462816 -47865531 + L1PA13 LINE L1 6416 6809 -5 2387 98 0 13 chr4 154462826 154463141 -47865206 + AluY SINE Alu 1 311 0 31 0 0 0 chr4 154463152 154463183 -47865164 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr4 154463321 154463345 -47865002 + (GAAA)n Simple_repeat Simple_repeat 1 24 0 1899 133 6 63 chr4 154463450 154463620 -47864727 - AluSx SINE Alu -13 299 154 243 0 0 0 chr4 154463620 154463647 -47864700 + (TTA)n Simple_repeat Simple_repeat 3 29 0 1899 133 6 63 chr4 154463647 154463793 -47864554 - AluSx SINE Alu -158 154 1 591 263 88 0 chr4 154463939 154464110 -47864237 + MIR SINE MIR 61 246 -16 35507 89 9 6 chr4 154464309 154470434 -47857913 + L1PA6 LINE L1 11 6151 -3 23 0 0 0 chr4 154470723 154470746 -47857601 + AT_rich Low_complexity Low_complexity 1 23 0 304 339 103 18 chr4 154471581 154471805 -47856542 + MIR SINE MIR 20 262 0 246 122 0 0 chr4 154471897 154471938 -47856409 + L1MB8 LINE L1 6134 6174 -4 894 288 138 55 chr4 154472377 154472995 -47855352 + L2 LINE L2 2118 2786 -528 394 239 77 31 chr4 154472996 154473126 -47855221 + MER20B DNA MER1_type 1 136 -647 882 272 123 3 chr4 154473154 154473496 -47854851 + MER20B DNA MER1_type 230 612 -171 398 273 0 0 chr4 154473855 154473954 -47854393 + L2 LINE L2 3174 3272 0 325 305 152 56 chr4 154474715 154474984 -47853363 + L2 LINE L2 2973 3267 -5 2135 125 0 0 chr4 154475069 154475357 -47852990 + AluSx SINE Alu 1 288 -24 600 169 127 0 chr4 154475554 154475672 -47852675 - FLAM_C SINE Alu 0 133 1 271 294 39 10 chr4 154476025 154476127 -47852220 - MIR3 SINE MIR -54 154 50 1157 119 18 50 chr4 154476832 154477050 -47851297 + MER2 DNA MER2_type 1 211 -134 217 208 26 0 chr4 154477671 154477748 -47850599 + GA-rich Low_complexity Low_complexity 3 81 0 301 306 134 30 chr4 154478308 154478442 -47849905 - HAL1 LINE L1 -1682 825 678 207 0 0 0 chr4 154478790 154478813 -47849534 + (TTA)n Simple_repeat Simple_repeat 2 24 0 497 282 0 16 chr4 154479226 154479350 -47848997 - L2 LINE L2 -3 3310 3189 1925 141 91 21 chr4 154479360 154479700 -47848647 + THE1B LTR MaLR 1 364 0 507 284 7 47 chr4 154479929 154480077 -47848270 + MIR3 SINE MIR 29 170 -38 324 70 0 0 chr4 154480378 154480421 -47847926 + (TG)n Simple_repeat Simple_repeat 2 44 0 37796 73 10 3 chr4 154481279 154487386 -47840961 - L1PA5 LINE L1 0 6154 2 273 306 94 24 chr4 154487849 154488137 -47840210 + L1ME4a LINE L1 5811 6118 -3 447 234 18 9 chr4 154488464 154488575 -47839772 + Tigger2 DNA MER2_type 2607 2718 0 1933 198 7 51 chr4 154488652 154489062 -47839285 - MSTD LTR MaLR -2 394 3 814 160 0 0 chr4 154489548 154489673 -47838674 - FLAM_A SINE Alu -8 125 1 1615 176 28 3 chr4 154489721 154490044 -47838303 - L1MB4 LINE L1 -3 6177 5847 814 187 14 0 chr4 154492277 154492416 -47835931 + FAM SINE Alu 27 167 -18 292 280 126 28 chr4 154492487 154492669 -47835678 - L2 LINE L2 -79 3234 3035 221 267 44 126 chr4 154492799 154492934 -47835413 - L2 LINE L2 -2 3311 3188 25 31 0 0 chr4 154493783 154493815 -47834532 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr4 154494078 154494107 -47834240 + AT_rich Low_complexity Low_complexity 1 29 0 1898 98 0 51 chr4 154494906 154495086 -47833261 - AluSq SINE Alu -8 305 142 2215 92 41 0 chr4 154495086 154495380 -47832967 - AluY SINE Alu -5 306 1 1898 98 0 51 chr4 154495380 154495475 -47832872 - AluSq SINE Alu -171 142 44 707 274 114 69 chr4 154495505 154495597 -47832750 - L1MEd LINE L1 -4503 1657 1571 237 33 0 0 chr4 154495597 154495627 -47832720 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 707 274 114 69 chr4 154495627 154497080 -47831267 - L1MEd LINE L1 -4589 1571 3 359 113 14 0 chr4 154497154 154497225 -47831122 + (TG)n Simple_repeat Simple_repeat 2 73 0 1865 144 3 20 chr4 154497250 154497542 -47830805 - AluJb SINE Alu -17 295 9 2011 123 31 0 chr4 154497989 154498281 -47830066 - AluSq SINE Alu 0 313 13 605 215 178 18 chr4 154498290 154498453 -47829894 - MER5A DNA MER1_type 0 189 1 2337 101 0 0 chr4 154499413 154499711 -47828636 + AluSg SINE Alu 1 298 -12 1951 87 40 11 chr4 154499711 154500015 -47828332 + AluY SINE Alu 1 312 0 1423 178 47 44 chr4 154500018 154500378 -47827969 + MLT1B LTR MaLR 30 390 0 422 330 229 29 chr4 154500382 154500901 -47827446 + L2 LINE L2 2150 2772 -542 2031 198 81 52 chr4 154501299 154501415 -47826932 - L1 LINE L1 -2201 3945 3834 1755 65 9 0 chr4 154501415 154501630 -47826717 - AluY SINE Alu -12 299 83 2031 198 81 52 chr4 154501630 154501874 -47826473 - L1 LINE L1 -2312 3834 3598 2223 126 25 27 chr4 154501874 154502239 -47826108 - THE1B LTR MaLR 0 364 1 2031 198 81 52 chr4 154502239 154502729 -47825618 - L1 LINE L1 -2548 3598 3044 2341 82 3 0 chr4 154502729 154503021 -47825326 + AluSp SINE Alu 1 293 -20 2031 198 81 52 chr4 154503021 154503426 -47824921 - L1 LINE L1 -3102 3044 2652 26 0 0 0 chr4 154503692 154503718 -47824629 + AT_rich Low_complexity Low_complexity 1 26 0 198 91 0 0 chr4 154505099 154505132 -47823215 + (TTAAA)n Simple_repeat Simple_repeat 4 36 0 1889 116 14 18 chr4 154505892 154506169 -47822178 - AluSx SINE Alu -36 276 1 244 159 0 0 chr4 154506169 154506213 -47822134 + L1MA9 LINE L1 6269 6312 0 3263 109 0 36 chr4 154506451 154506653 -47821694 - L1PA14 LINE L1 -2 6159 5951 2052 103 48 0 chr4 154506653 154506925 -47821422 - AluSc SINE Alu -24 285 1 3263 109 0 36 chr4 154506925 154507246 -47821101 - L1PA14 LINE L1 -210 5951 5655 2621 114 25 23 chr4 154507248 154507848 -47820499 + L1PA14 LINE L1 5083 5670 -491 852 50 14 0 chr4 154508169 154508308 -47820039 - SVA Other Other -537 849 709 1161 194 9 28 chr4 154508720 154508931 -47819416 - AluJb SINE Alu -21 291 85 317 326 133 30 chr4 154509531 154509967 -47818380 - L2 LINE L2 -2109 1205 725 1182 246 70 70 chr4 154510476 154510666 -47817681 - MER21B LTR ERV1 -154 709 520 1842 127 96 22 chr4 154510666 154510980 -47817367 - MER1B DNA MER1_type 0 337 1 1182 246 70 70 chr4 154510980 154511358 -47816989 - MER21B LTR ERV1 -342 521 141 2449 72 0 7 chr4 154511386 154511693 -47816654 + AluY SINE Alu 1 305 -6 285 351 129 20 chr4 154511888 154512090 -47816257 + L2 LINE L2 2849 3072 -200 232 324 49 20 chr4 154513208 154513310 -47815037 + MIR SINE MIR 47 151 -111 1083 143 98 20 chr4 154513801 154514004 -47814343 + MER20 DNA MER1_type 1 219 0 341 307 74 68 chr4 154515370 154515533 -47812814 + L2 LINE L2 3107 3270 -2 989 252 9 9 chr4 154516977 154517199 -47811148 + MIR SINE MIR 9 230 -32 943 156 0 32 chr4 154518112 154518266 -47810081 + AluJo SINE Alu 1 149 -163 327 109 43 0 chr4 154518301 154518347 -47810000 + AluJ/FRAM SINE Alu 227 274 -28 2296 98 6 25 chr4 154518354 154518672 -47809675 + AluSx SINE Alu 1 312 0 207 270 176 0 chr4 154520273 154520347 -47808000 + MER5A DNA MER1_type 31 117 -72 2402 62 0 0 chr4 154520388 154520679 -47807668 - AluY SINE Alu -20 291 1 668 232 81 11 chr4 154520803 154520988 -47807359 + MIR SINE MIR 65 262 0 189 361 28 0 chr4 154521580 154521652 -47806695 - L2 LINE L2 -5 3267 3194 296 107 0 6 chr4 154521728 154521774 -47806573 - MLT1D LTR MaLR 0 505 424 513 194 28 28 chr4 154521788 154521896 -47806451 - MLT1D LTR MaLR -397 108 1 222 326 29 82 chr4 154522037 154522282 -47806065 - L2 LINE L2 -229 3043 2812 180 320 0 20 chr4 154522542 154522592 -47805755 + L2 LINE L2 3204 3252 -20 445 271 84 36 chr4 154522665 154522831 -47805516 - MIR SINE MIR -53 209 36 22 0 0 0 chr4 154522848 154522870 -47805477 + AT_rich Low_complexity Low_complexity 1 22 0 19629 148 55 22 chr4 154523236 154525277 -47803070 + L1M1 LINE L1 148 2120 -5445 2242 109 10 0 chr4 154525277 154525579 -47802768 + AluSq SINE Alu 9 313 0 19629 148 55 22 chr4 154525579 154525720 -47802627 + L1M1 LINE L1 2120 2255 -5310 1731 163 38 3 chr4 154525720 154526008 -47802339 + AluJb SINE Alu 1 298 -14 19629 148 55 22 chr4 154526008 154527512 -47800835 + L1M1 LINE L1 2255 3961 -3604 1458 199 45 9 chr4 154527612 154527948 -47800399 + MLT1D LTR MaLR 158 505 0 22 80 0 0 chr4 154527972 154528022 -47800325 + AT_rich Low_complexity Low_complexity 1 50 0 23 54 0 0 chr4 154528395 154528432 -47799915 + AT_rich Low_complexity Low_complexity 1 37 0 215 278 31 41 chr4 154528478 154528575 -47799772 + L2 LINE L2 3014 3109 -163 192 200 0 0 chr4 154528684 154528719 -47799628 + L2 LINE L2 3205 3239 -33 351 263 231 13 chr4 154529380 154529536 -47798811 - MIR SINE MIR -14 248 59 21 36 0 0 chr4 154529633 154529661 -47798686 + AT_rich Low_complexity Low_complexity 1 28 0 1591 123 8 32 chr4 154533763 154534016 -47794331 - THE1B LTR MaLR 0 364 118 326 311 99 0 chr4 154534745 154534896 -47793451 + MIR SINE MIR 76 241 -21 283 103 0 0 chr4 154535040 154535079 -47793268 + MER5A DNA MER1_type 1 39 -150 359 225 62 70 chr4 154535451 154535580 -47792767 + Charlie8 DNA MER1_type 86 213 -2204 26 0 0 0 chr4 154535963 154535989 -47792358 + AT_rich Low_complexity Low_complexity 1 26 0 418 294 161 14 chr4 154538211 154538422 -47789925 + L1MC4 LINE L1 7375 7616 -426 2322 82 13 3 chr4 154538469 154538775 -47789572 + AluSc SINE Alu 1 309 0 402 236 45 9 chr4 154539207 154539317 -47789030 + L1M1 LINE L1 4369 4482 -3083 280 328 0 0 chr4 154539319 154539383 -47788964 + MER58 DNA MER1_type 4 67 -274 1485 240 162 53 chr4 154539414 154539469 -47788878 + L1M1 LINE L1 4694 4742 -2823 976 205 80 5 chr4 154539469 154539669 -47788678 + MER20 DNA MER1_type 4 218 -1 1485 240 162 53 chr4 154539669 154539748 -47788599 + L1M1 LINE L1 4742 4811 -2754 2174 109 10 26 chr4 154539748 154540061 -47788286 + AluSx SINE Alu 1 308 -4 1485 240 162 53 chr4 154540061 154540936 -47787411 + L1M1 LINE L1 4811 5814 -1751 417 203 0 25 chr4 154540936 154541015 -47787332 + Tigger5 DNA MER2_type 1 77 -2246 462 129 29 0 chr4 154541016 154541086 -47787261 - Tigger5 DNA MER2_type -3 2320 2249 438 197 0 0 chr4 154541094 154541165 -47787182 + Tigger5 DNA MER2_type 2253 2323 0 479 193 70 0 chr4 154541171 154541285 -47787062 + L1M1 LINE L1 5827 5948 -1617 * 520 194 137 7 chr4 154541280 154541419 -47786928 + L1M4 LINE L1 2697 2853 -3293 1684 214 58 24 chr4 154541978 154542356 -47785991 - MSTD LTR MaLR -5 391 1 3750 236 125 53 chr4 154542356 154543388 -47784959 - MSTD-int LTR MaLR 0 1735 779 3448 176 49 14 chr4 154543388 154544036 -47784311 + LTR51 LTR ERV1 1 671 0 3750 236 125 53 chr4 154544036 154544134 -47784213 - MSTD-int LTR MaLR -956 779 689 306 50 0 0 chr4 154544134 154544174 -47784173 + (TC)n Simple_repeat Simple_repeat 2 41 0 189 0 0 0 chr4 154544173 154544194 -47784153 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 3750 236 125 53 chr4 154544174 154544272 -47784075 - MSTD-int LTR MaLR -1046 689 439 3588 143 72 1 chr4 154544375 154545030 -47783317 - L1MA9 LINE L1 -336 5976 5276 3351 119 63 37 chr4 154545036 154545624 -47782723 - MER4B LTR ERV1 -7 603 1 3753 56 0 4 chr4 154545655 154546105 -47782242 + LTR7 LTR ERV1 1 448 -2 19206 92 16 80 chr4 154546107 154549514 -47778833 + HERVH LTR ERV1 1 5819 -1894 2567 71 53 13 chr4 154549511 154549889 -47778458 + HERVH LTR ERV1 7321 7713 0 * 3848 42 2 2 chr4 154549889 154550337 -47778010 + LTR7 LTR ERV1 1 448 -2 2470 206 11 9 chr4 154550337 154550692 -47777655 - L1MA9 LINE L1 -891 5255 4897 2222 174 65 103 chr4 154550692 154551311 -47777036 - LTR49 LTR ERV1 0 595 1 2470 206 11 9 chr4 154551311 154551484 -47776863 - L1MA9 LINE L1 -1249 4897 4726 257 130 93 0 chr4 154551486 154551540 -47776807 - L1M2 LINE L1 -4490 2359 2301 4267 134 11 70 chr4 154551541 154552297 -47776050 - MER50 LTR ERV1 -23 711 1 5964 106 21 6 chr4 154552297 154553479 -47774868 - MER50-int LTR ERV1 -8 7197 5365 2241 81 0 13 chr4 154553479 154553642 -47774705 - AluY SINE Alu -17 294 135 2207 84 0 17 chr4 154553642 154553938 -47774409 - AluSq SINE Alu -10 303 13 2241 81 0 13 chr4 154553938 154554072 -47774275 - AluY SINE Alu -176 135 1 3273 165 36 15 chr4 154554072 154555137 -47773210 - MER50-int LTR ERV1 -805 4075 2788 11290 136 58 8 chr4 154555144 154556893 -47771454 - MER50-int LTR ERV1 -5368 1837 1 522 120 53 0 chr4 154556967 154557042 -47771305 - MER50 LTR ERV1 -12 722 644 368 325 127 36 chr4 154557782 154557948 -47770399 + MIR SINE MIR 4 184 -78 313 353 88 24 chr4 154558397 154558567 -47769780 - L3b LINE CR1 -19 1564 1384 546 277 92 5 chr4 154558929 154559113 -47769234 + MIR SINE MIR 15 214 -48 444 151 14 0 chr4 154559205 154559278 -47769069 + MIR SINE MIR 91 164 -98 2502 139 39 51 chr4 154559325 154559756 -47768591 + MSTB LTR MaLR 1 426 0 236 211 0 19 chr4 154559774 154559826 -47768521 + MIR SINE MIR 145 195 -67 38 22 0 0 chr4 154560636 154560681 -47767666 + AT_rich Low_complexity Low_complexity 1 45 0 2693 133 29 16 chr4 154561159 154561604 -47766743 - L1MA6 LINE L1 -12 6288 5838 245 227 125 47 chr4 154562252 154562380 -47765967 - MIR SINE MIR -54 208 71 2865 10 0 0 chr4 154562472 154562780 -47765567 + AluYb8 SINE Alu 1 308 -10 226 194 60 45 chr4 154563199 154563266 -47765081 - MLT1K LTR MaLR -186 402 335 2624 118 60 24 chr4 154563608 154564025 -47764322 + Tigger2a DNA MER2_type 2 433 -1 2600 215 76 55 chr4 154564523 154566154 -47762193 + L1MCa LINE L1 1 1609 -4856 1942 159 0 7 chr4 154566724 154567020 -47761327 - AluJb SINE Alu -18 294 1 3911 157 51 61 chr4 154567023 154567055 -47761292 - L1MB2 LINE L1 0 6171 6140 1495 190 3 17 chr4 154567055 154567350 -47760997 + AluJo SINE Alu 1 291 -21 3911 157 51 61 chr4 154567350 154567869 -47760478 - L1MB2 LINE L1 -31 6140 5618 2742 88 8 8 chr4 154567869 154568244 -47760103 - THE1C LTR MaLR 0 375 1 3911 157 51 61 chr4 154568244 154568384 -47759963 - L1MB2 LINE L1 -553 5618 5478 2322 91 3 0 chr4 154568384 154568682 -47759665 - AluSp SINE Alu -14 299 1 3911 157 51 61 chr4 154568682 154568946 -47759401 - L1MB2 LINE L1 -693 5478 5225 243 0 0 0 chr4 154569245 154569272 -47759075 + (TA)n Simple_repeat Simple_repeat 2 28 0 2078 173 31 14 chr4 154569284 154569707 -47758640 + MLT1C LTR MaLR 24 453 -14 1037 125 13 103 chr4 154569784 154570008 -47758339 + L1M3 LINE L1 5333 5536 -635 2252 112 0 0 chr4 154570856 154571151 -47757196 + AluSx SINE Alu 1 295 -17 248 178 0 0 chr4 154571192 154571237 -47757110 + L2 LINE L2 3269 3313 0 825 234 82 30 chr4 154572435 154572666 -47755681 + MIR SINE MIR 20 262 0 2074 122 0 3 chr4 154572976 154573270 -47755077 - AluJb SINE Alu -19 293 1 276 53 0 0 chr4 154573506 154573544 -47754803 + (CA)n Simple_repeat Simple_repeat 2 39 0 2127 153 75 8 chr4 154573753 154574152 -47754195 + MSTB LTR MaLR 1 426 0 23 33 0 0 chr4 154574233 154574263 -47754084 + AT_rich Low_complexity Low_complexity 1 30 0 306 0 0 0 chr4 154574349 154574383 -47753964 + (CA)n Simple_repeat Simple_repeat 2 35 0 201 39 0 0 chr4 154575184 154575210 -47753137 + (TG)n Simple_repeat Simple_repeat 1 26 0 401 220 107 7 chr4 154575528 154575678 -47752669 - MER103 DNA DNA 0 166 2 2080 87 33 4 chr4 154576145 154576454 -47751893 - AluSx SINE Alu 0 317 1 705 202 0 0 chr4 154576937 154577051 -47751296 - FLAM_A SINE Alu -19 114 1 296 333 92 8 chr4 154577326 154577446 -47750901 + MER5A DNA MER1_type 27 156 -33 2435 76 3 0 chr4 154577649 154577953 -47750394 + AluY SINE Alu 2 306 -5 219 69 0 0 chr4 154578146 154578175 -47750172 + (TC)n Simple_repeat Simple_repeat 2 30 0 6087 153 17 27 chr4 154578203 154579893 -47748454 - L1PB1 LINE L1 -7 6144 4439 2465 57 7 3 chr4 154579893 154580193 -47748154 - AluY SINE Alu -10 301 1 6087 153 17 27 chr4 154580193 154580206 -47748141 - L1PB1 LINE L1 -1712 4439 4427 342 45 0 0 chr4 154580206 154580250 -47748097 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 2196 92 3 3 chr4 154580252 154580536 -47747811 - AluY SINE Alu -27 284 1 6087 153 17 27 chr4 154580536 154581098 -47747249 - L1PB1 LINE L1 -1725 4426 3904 609 270 6 28 chr4 154581103 154581281 -47747066 + MER5B DNA MER1_type 4 177 -1 188 262 0 0 chr4 154582446 154582488 -47745859 - L2 LINE L2 -18 3254 3213 1707 176 68 29 chr4 154583152 154583533 -47744814 - MSTD LTR MaLR 0 396 1 4164 190 26 62 chr4 154584494 154585796 -47742551 + L1MB4 LINE L1 4150 5388 -818 2478 70 0 0 chr4 154585796 154586094 -47742253 + AluY SINE Alu 1 298 -13 4164 190 26 62 chr4 154586094 154586164 -47742183 + L1MB4 LINE L1 5388 5459 -747 1160 119 27 18 chr4 154586164 154586381 -47741966 + L1MC1 LINE L1 6113 6333 0 584 287 87 7 chr4 154586443 154586743 -47741604 + L1M4 LINE L1 2366 2689 -3457 278 210 148 0 chr4 154586757 154586838 -47741509 - L1M4 LINE L1 -1513 4633 4541 278 194 56 0 chr4 154586870 154586942 -47741405 + L1M4 LINE L1 2721 2796 -3350 1653 197 68 34 chr4 154586942 154587384 -47740963 - LTR2B LTR ERV1 0 490 34 404 206 24 24 chr4 154587418 154587583 -47740764 + L1M4 LINE L1 2808 2972 -3174 2372 156 43 0 chr4 154587589 154588026 -47740321 + L1MB4 LINE L1 5719 6174 -6 622 211 13 19 chr4 154588144 154588300 -47740047 + L1ME3 LINE L1 69 223 -6319 539 144 0 10 chr4 154588625 154588722 -47739625 + MER4A LTR ERV1 3 98 -566 1762 123 3 77 chr4 154588722 154589095 -47739252 + MER4A LTR ERV1 261 664 0 1350 176 14 0 chr4 154589600 154589816 -47738531 + AluJb SINE Alu 84 302 -10 926 231 79 30 chr4 154589854 154589969 -47738378 + L1ME3 LINE L1 4917 5025 -1619 1752 155 63 30 chr4 154589969 154590331 -47738016 + THE1C LTR MaLR 2 375 0 926 231 79 30 chr4 154590331 154590475 -47737872 + L1ME3 LINE L1 5025 5160 -1484 192 77 0 0 chr4 154590475 154590501 -47737846 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 926 231 79 30 chr4 154590501 154590646 -47737701 + L1ME3 LINE L1 5160 5342 -1302 566 268 29 21 chr4 154590710 154590990 -47737357 + L1ME3 LINE L1 5480 5761 -883 207 139 0 0 chr4 154590996 154591032 -47737315 + (TA)n Simple_repeat Simple_repeat 2 37 0 421 290 22 0 chr4 154591032 154591263 -47737084 + L1ME3 LINE L1 5762 5997 -665 5190 144 30 26 chr4 154591267 154591518 -47736829 + L1PA16 LINE L1 4795 5044 -1122 2260 97 10 7 chr4 154591518 154591817 -47736530 + AluSq SINE Alu 1 300 -13 2298 75 3 0 chr4 154591819 154592122 -47736225 + AluY SINE Alu 1 304 0 5190 144 30 26 chr4 154592122 154592414 -47735933 + L1PA16 LINE L1 5044 5334 -832 1606 168 16 56 chr4 154592414 154592718 -47735629 + AluJb SINE Alu 1 292 -20 5190 144 30 26 chr4 154592718 154593521 -47734826 + L1PA16 LINE L1 5334 6151 -15 865 255 117 50 chr4 154593509 154593971 -47734376 + L1ME3 LINE L1 5966 6458 -202 * 235 275 11 66 chr4 154594050 154594141 -47734206 + MER5A DNA MER1_type 75 160 -29 203 261 0 62 chr4 154594087 154594152 -47734195 - MER5A DNA MER1_type -99 90 30 * 216 0 0 0 chr4 154594551 154594575 -47733772 + (T)n Simple_repeat Simple_repeat 1 24 0 3128 25 0 28 chr4 154594617 154594976 -47733371 - SVA Other Other 0 1386 1038 2702 128 2 14 chr4 154694976 154695048 -47633299 + L1PB1 LINE L1 5710 5781 -370 563 75 0 37 chr4 154695048 154695155 -47633192 + (TA)n Simple_repeat Simple_repeat 2 104 0 2702 128 2 14 chr4 154695155 154695528 -47632819 + L1PB1 LINE L1 5781 6150 -1 533 189 8 90 chr4 154695528 154695650 -47632697 - MER2 DNA MER2_type -232 113 2 1236 252 87 44 chr4 154695745 154696397 -47631950 + L1MC4a LINE L1 5211 5398 -748 2213 123 0 3 chr4 154696998 154697306 -47631041 + AluSx SINE Alu 1 307 -5 216 214 23 168 chr4 154697306 154697479 -47630868 + MIR SINE MIR 115 262 0 200 280 0 67 chr4 154698175 154698250 -47630097 - L2 LINE L2 -4 3309 3240 215 351 134 29 chr4 154698702 154698873 -47629474 + L2 LINE L2 3070 3258 -14 405 369 58 41 chr4 154699079 154699472 -47628875 - L2 LINE L2 -775 2539 2140 241 326 135 0 chr4 154699752 154699841 -47628506 + L2 LINE L2 3169 3269 -3 374 325 72 36 chr4 154700014 154700208 -47628139 + MIR SINE MIR 1 201 -61 2357 86 10 0 chr4 154701568 154701869 -47626478 - AluSq SINE Alu -9 304 1 1574 201 3 27 chr4 154702357 154702650 -47625697 - AluJo SINE Alu -26 286 1 2092 126 7 0 chr4 154703881 154704174 -47624173 - AluSx SINE Alu -17 295 1 1770 87 4 4 chr4 154706060 154706289 -47622058 - AluSq SINE Alu -84 229 1 1615 169 29 21 chr4 154706770 154707085 -47621262 + AluSx SINE Alu 1 317 0 25 51 0 0 chr4 154707519 154707558 -47620789 + AT_rich Low_complexity Low_complexity 1 39 0 279 204 0 0 chr4 154707559 154707608 -47620739 - FLAM SINE Alu -9 124 76 710 179 8 0 chr4 154707610 154707733 -47620614 - FLAM_A SINE Alu -8 125 2 2084 130 3 0 chr4 154709442 154709735 -47618612 + AluSq SINE Alu 3 296 -17 1472 145 63 76 chr4 154710131 154710172 -47618175 - THE1C LTR MaLR 0 375 335 2071 120 27 3 chr4 154710172 154710472 -47617875 + AluSq SINE Alu 1 307 -6 1472 145 63 76 chr4 154710472 154710810 -47617537 - THE1C LTR MaLR -40 335 1 21 36 0 0 chr4 154711674 154711702 -47616645 + AT_rich Low_complexity Low_complexity 1 28 0 313 281 38 91 chr4 154713243 154713452 -47614895 - MIR SINE MIR -55 207 9 2359 104 0 0 chr4 154713825 154714134 -47614213 + AluSc SINE Alu 1 309 0 261 337 86 12 chr4 154716569 154716732 -47611615 + MIR SINE MIR 82 256 -6 405 272 96 16 chr4 154716752 154716877 -47611470 - L2 LINE L2 -4 3309 3175 453 304 156 42 chr4 154717400 154717785 -47610562 + L1MC4 LINE L1 7605 8033 -9 421 141 42 0 chr4 154717976 154718047 -47610300 - MLT1A1 LTR MaLR 0 365 292 * 462 265 48 119 chr4 154718040 154718383 -47609964 + MLT1F1 LTR MaLR 64 415 -178 361 261 17 26 chr4 154718466 154718581 -47609766 - MLT1B LTR MaLR -79 311 198 369 307 29 22 chr4 154719140 154719277 -47609070 + L2 LINE L2 3176 3313 0 187 300 100 14 chr4 154719417 154719487 -47608860 - MIR3 SINE MIR -125 83 8 30 27 0 0 chr4 154719507 154719544 -47608803 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 154719755 154719776 -47608571 + AT_rich Low_complexity Low_complexity 1 21 0 230 0 33 0 chr4 154721622 154721652 -47606695 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2254 104 0 7 chr4 154723067 154723366 -47604981 + AluSg1 SINE Alu 1 297 -12 27 0 0 0 chr4 154723739 154723766 -47604581 + AT_rich Low_complexity Low_complexity 1 27 0 713 168 8 15 chr4 154723888 154724019 -47604328 + FLAM_A SINE Alu 1 130 -3 442 279 63 6 chr4 154724060 154724218 -47604129 - MIR SINE MIR 0 262 96 908 304 61 60 chr4 154724390 154724935 -47603412 + L2 LINE L2 2492 3060 -253 2373 71 3 3 chr4 154724935 154725230 -47603117 + AluSc SINE Alu 1 295 -14 908 304 61 60 chr4 154725230 154725463 -47602884 + L2 LINE L2 3060 3291 -22 647 244 70 12 chr4 154727058 154727300 -47601047 + MIR SINE MIR 4 259 -3 21 0 0 0 chr4 154727475 154727496 -47600851 + AT_rich Low_complexity Low_complexity 1 21 0 209 297 50 30 chr4 154728273 154728374 -47599973 - MIR SINE MIR -69 193 91 22 70 0 0 chr4 154728690 154728733 -47599614 + AT_rich Low_complexity Low_complexity 1 43 0 636 218 100 0 chr4 154729237 154729407 -47598940 + MIR SINE MIR 76 262 0 10105 27 3 18 chr4 154729411 154731437 -47596910 - L1PA3 LINE L1 0 6155 4165 207 0 0 0 chr4 154731888 154731911 -47596436 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 2175 97 0 58 chr4 154732401 154732730 -47595617 + AluSg SINE Alu 1 310 0 223 233 279 23 chr4 154733242 154733328 -47595019 - L2 LINE L2 -1 3271 3164 274 304 12 31 chr4 154734007 154734168 -47594179 - L2 LINE L2 -1006 2308 2151 592 285 22 65 chr4 154734180 154734457 -47593890 - L2 LINE L2 -615 2699 2435 1361 164 9 0 chr4 154734462 154734693 -47593654 - MLT1C LTR MaLR -231 236 4 1279 210 18 18 chr4 154734695 154734981 -47593366 - L2 LINE L2 -893 2421 2136 190 291 134 47 chr4 154735614 154735741 -47592606 + L2 LINE L2 2920 3057 -215 341 222 0 88 chr4 154735785 154735979 -47592368 + (CATAC)n Simple_repeat Simple_repeat 3 179 0 588 225 104 56 chr4 154738361 154738592 -47589755 - MLT1K LTR MaLR -8 580 339 327 267 23 0 chr4 154738737 154738823 -47589524 - MLT1K LTR MaLR -455 133 46 36 53 0 0 chr4 154739574 154739631 -47588716 + AT_rich Low_complexity Low_complexity 1 57 0 222 193 0 0 chr4 154739960 154740017 -47588330 + (TATG)n Simple_repeat Simple_repeat 2 58 0 416 254 36 93 chr4 154740606 154740799 -47587548 + MIR SINE MIR 35 216 -46 216 274 128 8 chr4 154741744 154741861 -47586486 - L2 LINE L2 -1033 2281 2151 244 300 20 10 chr4 154742354 154742454 -47585893 - MIR SINE MIR -71 191 91 358 363 25 21 chr4 154743862 154744102 -47584245 + MIR SINE MIR 8 248 -14 2410 62 16 20 chr4 154744186 154744490 -47583857 + AluY SINE Alu 1 303 -8 348 102 85 0 chr4 154745222 154745281 -47583066 + L1PA13 LINE L1 6096 6159 -4 546 304 115 5 chr4 154745973 154746164 -47582183 + MIR SINE MIR 50 261 -1 24 32 0 0 chr4 154746299 154746330 -47582017 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 154748703 154748731 -47579616 + AT_rich Low_complexity Low_complexity 1 28 0 285 256 101 85 chr4 154749789 154749918 -47578429 - MIR SINE MIR -6 256 126 540 326 81 50 chr4 154750949 154751210 -47577137 - L2 LINE L2 -1 3271 3003 1947 260 91 32 chr4 154752233 154753190 -47575157 + L2 LINE L2 2273 3309 -4 351 273 9 9 chr4 154754354 154754464 -47573883 + L1M4 LINE L1 4501 4610 -1536 522 315 76 43 chr4 154754484 154754852 -47573495 + L1M4 LINE L1 4672 5051 -1095 253 255 20 0 chr4 154754901 154754952 -47573395 - MER2 DNA MER2_type -14 331 280 633 123 9 26 chr4 154754990 154755104 -47573243 - MER2 DNA MER2_type -139 206 95 13657 200 54 19 chr4 154755118 154759388 -47568959 + L1P5 LINE L1 6 4722 -2145 2159 123 0 3 chr4 154759388 154759689 -47568658 + AluSx SINE Alu 1 300 -12 13657 200 54 19 chr4 154759689 154761543 -47566804 + L1P5 LINE L1 4722 6510 -357 788 196 76 0 chr4 154761714 154761872 -47566475 - MLT1B LTR MaLR -201 189 20 663 206 43 0 chr4 154761898 154762039 -47566308 + MLT1F1 LTR MaLR 421 567 0 1991 184 42 21 chr4 154762086 154762564 -47565783 - Looper DNA T2_type -125 1433 946 1970 182 31 0 chr4 154763261 154763612 -47564735 - MER47A DNA MER2_type -1 365 4 583 282 102 14 chr4 154765605 154765821 -47562526 + MIR SINE MIR 12 246 -16 1839 154 3 35 chr4 154766207 154766519 -47561828 + AluJo SINE Alu 1 302 -10 25 51 0 0 chr4 154766570 154766609 -47561738 + AT_rich Low_complexity Low_complexity 1 39 0 198 0 0 0 chr4 154767558 154767580 -47560767 + (A)n Simple_repeat Simple_repeat 1 22 0 662 185 30 0 chr4 154768509 154768644 -47559703 - MER3 DNA MER1_type -70 139 1 1066 128 7 0 chr4 154768991 154769140 -47559207 + AluSq/x SINE Alu 1 150 -162 1209 88 0 0 chr4 154769271 154769419 -47558928 + AluSp SINE Alu 152 299 -14 789 248 171 10 chr4 154769439 154769947 -47558400 + L1ME2 LINE L1 5479 6058 -106 1860 157 35 26 chr4 154770403 154770748 -47557599 + MER61C LTR ERV1 86 433 -1 628 198 0 84 chr4 154770765 154770932 -47557415 + MER61C-int LTR ERV1 18 170 -5047 1064 147 3 134 chr4 154771000 154771314 -47557033 + MER61C-int LTR ERV1 182 454 -4763 2981 186 86 67 chr4 154771332 154772102 -47556245 + MER61C-int LTR ERV1 413 1128 -4089 2001 109 64 0 chr4 154772102 154772385 -47555962 - AluSp SINE Alu -12 301 1 2981 186 86 67 chr4 154772385 154772909 -47555438 + MER61C-int LTR ERV1 1128 1640 -3577 * 4858 100 29 16 chr4 154772894 154773724 -47554623 + MER61C-int LTR ERV1 1978 2818 -2399 1957 154 0 3 chr4 154773901 154774199 -47554148 + AluJo SINE Alu 1 297 -15 947 221 0 0 chr4 154774199 154774362 -47553985 + AluJb SINE Alu 134 296 -16 1302 156 165 40 chr4 154774362 154774851 -47553496 - Charlie1 DNA MER1_type -50 2711 5 2305 235 107 25 chr4 154774924 154775711 -47552636 + L1MB7 LINE L1 5254 6104 -80 220 290 113 48 chr4 154777605 154777729 -47550618 - MER5B DNA MER1_type -45 133 2 605 287 61 6 chr4 154777755 154777936 -47550411 + MIR SINE MIR 23 213 -49 987 212 98 33 chr4 154778004 154778235 -47550112 + MER58B DNA MER1_type 26 279 -2141 1807 124 0 33 chr4 154778235 154778508 -47549839 + AluY SINE Alu 35 298 -13 987 212 98 33 chr4 154778508 154778550 -47549797 + MER58B DNA MER1_type 279 317 -24 767 218 13 53 chr4 154779380 154779605 -47548742 + Charlie8 DNA MER1_type 33 248 -2169 372 341 73 9 chr4 154780026 154780246 -47548101 - MIR SINE MIR -2 260 27 188 385 12 12 chr4 154781160 154781243 -47547104 + L2 LINE L2 2965 3047 -225 238 296 102 0 chr4 154783366 154783454 -47544893 - MIR3 SINE MIR -40 168 72 1958 148 3 10 chr4 154783797 154784108 -47544239 + AluSx SINE Alu 1 309 -3 1403 176 0 100 chr4 154784690 154785009 -47543338 + AluJb SINE Alu 1 287 -25 2268 104 0 3 chr4 154785020 154785327 -47543020 - AluSx SINE Alu -6 306 1 23 78 0 0 chr4 154785395 154785446 -47542901 + AT_rich Low_complexity Low_complexity 1 51 0 247 343 84 0 chr4 154785973 154786116 -47542231 - MIR SINE MIR -87 175 21 469 322 87 14 chr4 154786176 154786228 -47542119 - MIR SINE MIR -14 248 201 1583 162 45 27 chr4 154786228 154786561 -47541786 + MER44D DNA MER2_type 1 609 0 469 322 87 14 chr4 154786561 154786716 -47541631 - MIR SINE MIR -61 201 26 245 256 164 72 chr4 154786946 154787078 -47541269 + MIR SINE MIR 22 179 -83 1583 178 50 7 chr4 154787078 154787359 -47540988 + AluJb SINE Alu 1 293 -19 245 256 164 72 chr4 154787359 154787421 -47540926 + MIR SINE MIR 179 234 -28 549 131 30 10 chr4 154787588 154787687 -47540660 + MER61C-int LTR ERV1 4924 5024 -922 1097 99 0 0 chr4 154787688 154787830 -47540517 + AluSp/q SINE Alu 164 305 -8 11490 108 42 6 chr4 154787830 154789647 -47538700 + MER61C-int LTR ERV1 3335 5217 0 1805 142 59 9 chr4 154789664 154789987 -47538360 + MER61C LTR ERV1 86 424 -10 22 0 0 0 chr4 154790500 154790522 -47537825 + AT_rich Low_complexity Low_complexity 1 22 0 2316 92 34 53 chr4 154793438 154793671 -47534676 + L1MA5A LINE L1 5889 6112 -185 1858 140 36 4 chr4 154793671 154793950 -47534397 + AluJb SINE Alu 1 288 -24 2316 92 34 53 chr4 154793950 154794130 -47534217 + L1MA5A LINE L1 6112 6294 -3 206 380 93 9 chr4 154794261 154794369 -47533978 - L2 LINE L2 -34 3238 3122 230 325 62 12 chr4 154794425 154794505 -47533842 - L2 LINE L2 -67 3205 3122 226 333 67 13 chr4 154794563 154794638 -47533709 - L2 LINE L2 -68 3204 3126 188 355 149 8 chr4 154794671 154794792 -47533555 - MIR3 SINE MIR -35 173 36 186 246 92 31 chr4 154794828 154794893 -47533454 + MIR SINE MIR 187 255 -7 4121 260 157 31 chr4 154795151 154797053 -47531294 + L2 LINE L2 1039 3172 -141 1602 197 116 3 chr4 154797057 154797438 -47530909 - MER63B DNA MER1_type -1 435 12 296 228 54 54 chr4 154797456 154797548 -47530799 + L2 LINE L2 3222 3313 0 244 284 129 26 chr4 154798477 154798593 -47529754 - MIR SINE MIR -74 188 61 23 0 0 0 chr4 154801424 154801447 -47526900 + AT_rich Low_complexity Low_complexity 1 23 0 1784 112 0 23 chr4 154802077 154802335 -47526012 - AluSx SINE Alu -18 294 43 633 335 43 50 chr4 154803660 154804036 -47524311 + L3b LINE CR1 1180 1552 -31 311 260 63 24 chr4 154804455 154804582 -47523765 - MIR SINE MIR -11 251 120 209 225 0 0 chr4 154808346 154808386 -47519961 + L2 LINE L2 3265 3304 -9 276 348 45 0 chr4 154809069 154809181 -47519166 - MIR3 SINE MIR -7 201 85 219 154 0 0 chr4 154810228 154810267 -47518080 + (TA)n Simple_repeat Simple_repeat 2 40 0 324 371 28 17 chr4 154810459 154810637 -47517710 + MER5A DNA MER1_type 7 186 -3 1113 160 42 14 chr4 154810766 154810979 -47517368 - MER20 DNA MER1_type 0 219 1 1794 130 67 0 chr4 154812136 154812420 -47515927 - MER1B DNA MER1_type 0 339 37 362 320 121 65 chr4 154813390 154813621 -47514726 - L2 LINE L2 0 3272 3029 2358 174 49 20 chr4 154813936 154814424 -47513923 + MLT1D LTR MaLR 1 502 -3 200 190 52 0 chr4 154815857 154815915 -47512432 + A-rich Low_complexity Low_complexity 3 63 0 238 287 103 38 chr4 154815994 154816154 -47512193 + MER5A DNA MER1_type 1 184 -5 21 0 0 0 chr4 154816317 154816338 -47512009 + AT_rich Low_complexity Low_complexity 1 21 0 751 139 139 0 chr4 154816583 154816720 -47511627 + FRAM SINE Alu 13 168 -8 233 333 44 53 chr4 154817409 154817523 -47510824 + L2 LINE L2 3160 3272 0 1821 138 28 3 chr4 154818777 154819059 -47509288 + AluSx SINE Alu 1 289 -23 225 146 0 0 chr4 154819654 154819702 -47508645 + (A)n Simple_repeat Simple_repeat 1 48 0 300 224 92 13 chr4 154822098 154822174 -47506173 + MIR3 SINE MIR 115 196 -12 217 338 13 0 chr4 154823463 154823540 -47504807 + MIR SINE MIR 24 101 -161 6282 41 0 3 chr4 154823553 154824304 -47504043 - L1PA6 LINE L1 -11 6143 5395 511 301 20 0 chr4 154824307 154824460 -47503887 + MIR SINE MIR 104 259 -3 258 402 31 8 chr4 154824461 154824588 -47503759 - L2 LINE L2 0 3272 3143 1131 170 5 10 chr4 154824636 154824830 -47503517 + MER20 DNA MER1_type 27 219 0 205 175 25 0 chr4 154824838 154824878 -47503469 - MIR SINE MIR -64 198 158 2154 82 23 36 chr4 154824891 154825195 -47503152 + AluSg SINE Alu 1 300 -10 204 272 98 54 chr4 154825566 154825762 -47502585 + MIR SINE MIR 3 211 -51 497 314 37 11 chr4 154825845 154826033 -47502314 - MIR SINE MIR -60 202 10 206 363 44 26 chr4 154827570 154827683 -47500664 - L2 LINE L2 -181 3091 2977 186 373 150 0 chr4 154827759 154827912 -47500435 - L2 LINE L2 -461 2853 2678 214 250 167 33 chr4 154828053 154828173 -47500174 - L2 LINE L2 -828 2486 2351 * 514 270 61 65 chr4 154828166 154828396 -47499951 - L2 LINE L2 -1 3312 3084 378 314 157 22 chr4 154828376 154828599 -47499748 - L2 LINE L2 -938 2376 2124 * 291 281 37 0 chr4 154829650 154829732 -47498615 - MIR SINE MIR -10 252 168 557 297 42 49 chr4 154829860 154830123 -47498224 - MIR SINE MIR 0 262 2 1615 154 16 79 chr4 154830837 154831155 -47497192 + AluJb SINE Alu 5 302 -10 21 71 0 0 chr4 154833983 154834025 -47494322 + AT_rich Low_complexity Low_complexity 1 42 0 204 220 20 20 chr4 154834372 154834422 -47493925 - L2 LINE L2 0 3313 3264 22 0 0 30 chr4 154835219 154835238 -47493109 + AT_rich Low_complexity Low_complexity 1 20 -12 2031 115 0 13 chr4 154835238 154835542 -47492805 + AluSq SINE Alu 1 300 -13 22 0 0 30 chr4 154835542 154835555 -47492792 + AT_rich Low_complexity Low_complexity 20 32 0 261 0 0 0 chr4 154835971 154836000 -47492347 + (TTG)n Simple_repeat Simple_repeat 2 30 0 327 280 122 9 chr4 154836602 154836709 -47491638 - MIR SINE MIR -114 148 30 323 333 143 0 chr4 154836732 154836900 -47491447 + MIR SINE MIR 68 259 -3 275 301 60 0 chr4 154837578 154837661 -47490686 - MIR SINE MIR -152 110 23 1798 183 7 10 chr4 154838764 154839070 -47489277 + AluJo SINE Alu 1 305 -7 300 258 115 29 chr4 154839676 154839861 -47488486 - L1P4 LINE L1 -526 5595 5432 1821 121 22 16 chr4 154839864 154840186 -47488161 - L1MB3 LINE L1 -2 6181 5858 363 293 135 30 chr4 154840273 154840755 -47487592 - L2 LINE L2 0 3313 2766 2385 99 0 0 chr4 154840759 154841071 -47487276 - AluSx SINE Alu 0 312 1 774 167 7 21 chr4 154841683 154841827 -47486520 + MER33 DNA MER1_type 2 143 -181 206 95 24 0 chr4 154841827 154841869 -47486478 + (TA)n Simple_repeat Simple_repeat 2 44 0 515 173 15 23 chr4 154841910 154842043 -47486304 + MER33 DNA MER1_type 148 279 -45 279 363 123 47 chr4 154842984 154843408 -47484939 + L2 LINE L2 2811 3266 -6 25 0 0 0 chr4 154843994 154844019 -47484328 + AT_rich Low_complexity Low_complexity 1 25 0 483 185 67 17 chr4 154845251 154845370 -47482977 - MER94 DNA DNA 0 134 10 26 0 0 0 chr4 154845587 154845613 -47482734 + AT_rich Low_complexity Low_complexity 1 26 0 360 270 17 0 chr4 154846394 154846509 -47481838 + L1MB8 LINE L1 6060 6176 -2 342 196 205 73 chr4 154846640 154846809 -47481538 - L1MC5 LINE L1 -57 7904 7759 189 0 0 0 chr4 154846809 154846830 -47481517 + (TA)n Simple_repeat Simple_repeat 2 22 0 342 196 205 73 chr4 154846830 154846987 -47481360 - L1MC5 LINE L1 -202 7759 7535 676 89 10 0 chr4 154847182 154847283 -47481064 + L1PA15 LINE L1 6064 6165 0 389 204 42 58 chr4 154847299 154847393 -47480954 + LTR29 LTR ERV1 318 412 -232 2100 107 0 39 chr4 154847393 154847703 -47480644 - AluY SINE Alu -13 298 1 389 204 42 58 chr4 154847703 154847819 -47480528 + LTR29 LTR ERV1 412 568 -76 13832 114 40 52 chr4 154848046 154848465 -47479882 + Tigger1 DNA MER2_type 2 424 -1994 1715 161 4 4 chr4 154848465 154848726 -47479621 + AluJb SINE Alu 33 293 -19 13832 114 40 52 chr4 154848726 154850752 -47477595 + Tigger1 DNA MER2_type 424 2418 0 247 323 23 15 chr4 154851436 154851566 -47476781 - MLT1L LTR MaLR -2 613 483 1980 142 0 10 chr4 154851597 154851907 -47476440 + AluSx SINE Alu 2 308 -4 1840 172 52 7 chr4 154852623 154852975 -47475372 - MER61C LTR ERV1 0 434 1 631 200 46 41 chr4 154853411 154853606 -47474741 + L1ME2 LINE L1 5135 5330 -816 965 218 66 41 chr4 154853610 154853927 -47474420 + L1MC4a LINE L1 5697 6021 -1787 4328 203 76 48 chr4 154853934 154855171 -47473176 + L1MC4a LINE L1 6537 7808 0 2030 188 113 59 chr4 154855219 154855862 -47472485 + L1ME2 LINE L1 5369 6046 -118 869 172 42 57 chr4 154956615 154956807 -47371540 + MER5A DNA MER1_type 1 189 0 783 233 41 96 chr4 154957547 154957818 -47370529 - MIR SINE MIR 0 262 7 243 146 0 0 chr4 154958627 154958668 -47369679 + (TG)n Simple_repeat Simple_repeat 2 42 0 185 180 0 16 chr4 154959093 154959154 -47369193 + (CCG)n Simple_repeat Simple_repeat 1 60 0 220 306 0 56 chr4 154959452 154959560 -47368787 + GA-rich Low_complexity Low_complexity 4 105 0 222 309 0 0 chr4 154959676 154959744 -47368603 + GA-rich Low_complexity Low_complexity 1 68 0 246 174 0 0 chr4 154959982 154960028 -47368319 + T-rich Low_complexity Low_complexity 1 46 0 377 110 14 0 chr4 154960252 154960325 -47368022 + (TC)n Simple_repeat Simple_repeat 2 75 0 255 61 0 0 chr4 154960377 154960410 -47367937 + (CA)n Simple_repeat Simple_repeat 2 34 0 467 278 124 12 chr4 154961846 154962015 -47366332 + MIR3 SINE MIR 16 203 -5 205 292 46 15 chr4 154962485 154962550 -47365797 - L2 LINE L2 -12 3260 3194 530 100 12 12 chr4 154964858 154964938 -47363409 + MADE1 DNA Mariner 1 80 0 446 184 119 28 chr4 154965039 154965148 -47363199 - MER58C DNA MER1_type -35 180 62 252 0 0 0 chr4 154965149 154965177 -47363170 + (A)n Simple_repeat Simple_repeat 1 28 0 485 154 0 0 chr4 154965265 154965343 -47363004 + AluJ/FRAM SINE Alu 222 299 -13 319 232 12 49 chr4 154965391 154965473 -47362874 + MIR3 SINE MIR 91 169 -39 1545 157 27 23 chr4 154965791 154966091 -47362256 + AluJo SINE Alu 1 301 -11 212 300 33 44 chr4 154966279 154966369 -47361978 + MIR3 SINE MIR 4 92 -116 195 351 39 0 chr4 154966720 154966797 -47361550 + MIR SINE MIR 1 80 -182 308 268 12 12 chr4 154967427 154967509 -47360838 + MIR3 SINE MIR 124 205 -3 212 196 39 0 chr4 154967665 154967716 -47360631 - L2 LINE L2 0 3313 3261 474 292 53 6 chr4 154968883 154969054 -47359293 - MIR SINE MIR -64 198 20 2360 64 0 3 chr4 154971296 154971579 -47356768 + AluSc SINE Alu 22 303 -6 6683 183 56 5 chr4 154972718 154974048 -47354299 + Charlie1a DNA MER1_type 58 1455 0 1026 232 68 134 chr4 154975855 154976632 -47351715 + L2 LINE L2 2514 3243 -70 201 400 33 5 chr4 154976634 154976844 -47351503 - L2 LINE L2 -212 3060 2845 243 305 109 8 chr4 154977177 154977305 -47351042 - MIR SINE MIR -120 142 2 273 109 0 0 chr4 154978631 154978677 -47349670 + (CCA)n Simple_repeat Simple_repeat 3 48 0 25 0 0 28 chr4 154980177 154980196 -47348151 + AT_rich Low_complexity Low_complexity 1 20 -15 2262 106 27 0 chr4 154980196 154980497 -47347850 + AluSx SINE Alu 1 309 -3 25 0 0 28 chr4 154980497 154980513 -47347834 + AT_rich Low_complexity Low_complexity 20 35 0 216 193 0 70 chr4 154981552 154981609 -47346738 + C-rich Low_complexity Low_complexity 3 55 0 1926 148 0 0 chr4 154982743 154983033 -47345314 - AluSx SINE Alu -22 290 1 505 286 37 77 chr4 154983852 154984125 -47344222 - MIR SINE MIR 0 262 1 2091 160 30 25 chr4 154985516 154985879 -47342468 - MLT1A1 LTR MaLR 0 365 1 30 0 0 0 chr4 154985994 154986024 -47342323 + AT_rich Low_complexity Low_complexity 1 30 0 633 259 23 55 chr4 154986132 154986352 -47341995 - MIR SINE MIR -3 259 47 180 111 0 0 chr4 154986804 154986831 -47341516 + (A)n Simple_repeat Simple_repeat 1 27 0 939 195 0 13 chr4 154986965 154987124 -47341223 - FRAM SINE Alu -9 157 1 21 0 0 0 chr4 154987250 154987271 -47341076 + AT_rich Low_complexity Low_complexity 1 21 0 275 100 100 0 chr4 154987645 154987695 -47340652 - MLT2A1 LTR ERVL 0 444 390 461 58 74 8 chr4 154987700 154987821 -47340526 + (TA)n Simple_repeat Simple_repeat 2 130 0 2845 88 25 8 chr4 154987821 154988217 -47340130 - MLT2A1 LTR ERVL -41 403 1 1604 130 81 23 chr4 154988916 154989095 -47339252 + AluJb SINE Alu 21 221 -91 240 35 0 0 chr4 154989095 154989124 -47339223 + (GGATG)n Simple_repeat Simple_repeat 3 31 0 1604 130 81 23 chr4 154989124 154989205 -47339142 + AluJb SINE Alu 221 296 -16 180 97 0 0 chr4 154989618 154989649 -47338698 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2067 115 3 3 chr4 154989652 154989939 -47338408 - AluSx SINE Alu -25 287 1 339 191 75 122 chr4 154991035 154991115 -47337232 - MIR SINE MIR 0 262 191 2421 78 0 7 chr4 154991115 154991422 -47336925 - AluSq SINE Alu -8 305 1 339 191 75 122 chr4 154991422 154991488 -47336859 - MIR SINE MIR -71 191 123 1612 93 0 0 chr4 154992055 154992259 -47336088 - AluY SINE Alu -107 204 1 402 204 0 45 chr4 154992266 154992354 -47335993 + L2 LINE L2 3229 3312 -1 439 260 24 24 chr4 154994256 154994379 -47333968 - MIR SINE MIR -75 187 65 29 60 0 0 chr4 154994913 154994963 -47333384 + AT_rich Low_complexity Low_complexity 1 50 0 777 181 42 72 chr4 154995227 154995420 -47332927 - MER20 DNA MER1_type -1 218 32 718 251 6 0 chr4 154995545 154995708 -47332639 - MIR SINE MIR -8 254 91 345 387 21 0 chr4 154996153 154996295 -47332052 - MIR3 SINE MIR -54 154 10 24 0 0 0 chr4 154996416 154996440 -47331907 + AT_rich Low_complexity Low_complexity 1 24 0 289 203 95 0 chr4 154997213 154997287 -47331060 + MLT1H LTR MaLR 20 100 -449 784 203 0 0 chr4 154997451 154997584 -47330763 + FLAM_A SINE Alu 1 133 0 703 145 17 22 chr4 154997588 154997767 -47330580 + GA-rich Low_complexity Low_complexity 1 178 0 384 140 0 0 chr4 154997767 154997824 -47330523 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 385 296 40 0 chr4 154998242 154998367 -47329980 + MIR SINE MIR 111 240 -22 215 260 0 0 chr4 154998390 154998440 -47329907 + (TAA)n Simple_repeat Simple_repeat 2 51 0 221 191 0 24 chr4 154998932 154998974 -47329373 + MIR SINE MIR 28 68 -194 2033 109 4 0 chr4 154998994 154999268 -47329079 + AluSg SINE Alu 16 290 -20 571 291 14 0 chr4 154999268 154999416 -47328931 + MIR SINE MIR 59 208 -54 578 167 117 128 chr4 155000929 155001109 -47327238 + MER5B DNA MER1_type 1 178 0 24 0 0 0 chr4 155002079 155002103 -47326244 + AT_rich Low_complexity Low_complexity 1 24 0 201 250 23 0 chr4 155002575 155002619 -47325728 + L2 LINE L2 3211 3255 -17 278 202 143 12 chr4 155006084 155006168 -47322179 - L2 LINE L2 -5 3267 3173 229 304 13 0 chr4 155006666 155006745 -47321602 - MLT1K LTR MaLR -8 580 501 1251 230 204 23 chr4 155007754 155008307 -47320040 + L2 LINE L2 2381 3040 -273 410 281 70 0 chr4 155008303 155008417 -47319930 + L2 LINE L2 3192 3313 0 * 202 277 36 36 chr4 155008891 155008974 -47319373 - MIR SINE MIR -104 158 76 189 374 0 35 chr4 155009080 155009195 -47319152 - MIR3 SINE MIR -86 122 12 294 158 18 18 chr4 155009215 155009272 -47319075 + L2 LINE L2 3256 3312 -1 263 345 61 18 chr4 155009301 155009466 -47318881 - MIR SINE MIR -49 213 42 2090 166 128 19 chr4 155009881 155010302 -47318045 + MLT1C LTR MaLR 1 467 0 2103 155 0 0 chr4 155010544 155010848 -47317499 + AluJb SINE Alu 1 304 -8 252 0 0 0 chr4 155011463 155011491 -47316856 + (CA)n Simple_repeat Simple_repeat 2 29 0 1763 173 84 45 chr4 155012354 155012566 -47315781 - MSTD LTR MaLR 0 396 161 2269 102 3 0 chr4 155012566 155012859 -47315488 + AluSp SINE Alu 1 294 -19 1763 173 84 45 chr4 155012859 155013027 -47315320 - MSTD LTR MaLR -235 161 1 6994 209 97 22 chr4 155013027 155014640 -47313707 - MSTD-int LTR MaLR 0 1735 2 1822 186 86 19 chr4 155014642 155015013 -47313334 - MSTD LTR MaLR 0 396 1 342 0 0 0 chr4 155015103 155015141 -47313206 + (A)n Simple_repeat Simple_repeat 1 38 0 488 125 12 12 chr4 155015444 155015524 -47312823 + MADE1 DNA Mariner 1 80 0 296 234 122 28 chr4 155015627 155015734 -47312613 - MER58C DNA MER1_type -37 178 62 252 0 0 0 chr4 155015735 155015763 -47312584 + (A)n Simple_repeat Simple_repeat 1 28 0 506 141 0 0 chr4 155015851 155015929 -47312418 + AluJ/FRAM SINE Alu 222 299 -13 537 217 100 28 chr4 155016486 155016666 -47311681 - L1ME4a LINE L1 -189 5932 5740 3513 65 7 7 chr4 155016718 155017166 -47311181 - LTR7 LTR ERV1 -2 448 1 2501 80 53 13 chr4 155017166 155017543 -47310804 - HERVH LTR ERV1 0 7713 7322 1401 116 18 36 chr4 155017541 155017765 -47310582 - HERVH LTR ERV1 -1894 5819 5600 * 4422 132 3 9 chr4 155017766 155018432 -47309915 - HERVH LTR ERV1 -2564 5149 4488 3483 109 0 6 chr4 155018434 155018939 -47309408 - HERVH LTR ERV1 -3720 3993 3492 * 21087 79 53 50 chr4 155018929 155022209 -47306138 - HERVH LTR ERV1 -4423 3290 1 1685 96 26 17 chr4 155022211 155022609 -47305738 - LTR7 LTR ERV1 -2 448 1 306 0 0 0 chr4 155022885 155022919 -47305428 + (TG)n Simple_repeat Simple_repeat 1 34 0 1944 134 0 14 chr4 155022920 155023240 -47305107 - AluJb SINE Alu 0 312 1 392 274 153 17 chr4 155023322 155023563 -47304784 - L1MC5 LINE L1 -36 7925 7652 651 200 81 49 chr4 155028000 155028121 -47300226 + MIR SINE MIR 3 146 -116 1792 90 93 111 chr4 155028121 155028174 -47300173 - MER44D DNA MER2_type -1882 609 557 2296 101 0 0 chr4 155028174 155028471 -47299876 + AluSq SINE Alu 1 297 -16 1792 90 93 111 chr4 155028471 155028761 -47299586 - MER44D DNA MER2_type -1934 557 2 651 200 81 49 chr4 155028761 155028852 -47299495 + MIR SINE MIR 146 233 -29 464 308 81 14 chr4 155028867 155029078 -47299269 - MIR SINE MIR -14 248 24 506 204 111 62 chr4 155030768 155030930 -47297417 + MER91B DNA MER1_type 1 170 -20 459 204 9 26 chr4 155032480 155032593 -47295754 + L1MC5 LINE L1 7751 7861 -100 554 198 80 91 chr4 155034338 155034525 -47293822 + LTR16A1 LTR ERVL 273 457 0 1845 143 7 0 chr4 155034916 155035244 -47293103 + AluJb SINE Alu 8 337 0 232 325 67 33 chr4 155036162 155036282 -47292065 + MIR SINE MIR 132 255 -7 2194 91 0 3 chr4 155036717 155037033 -47291314 + AluY SINE Alu 10 311 0 2275 98 0 0 chr4 155037046 155037370 -47290977 + AluSx SINE Alu 1 312 0 2426 94 0 0 chr4 155037383 155037690 -47290657 + AluSx SINE Alu 1 307 -5 195 288 188 0 chr4 155038457 155038537 -47289810 - MIR SINE MIR -63 145 51 2239 114 0 0 chr4 155040522 155040821 -47287526 - AluSq SINE Alu -14 299 1 1583 217 124 43 chr4 155041320 155041781 -47286566 + MLT1D LTR MaLR 2 499 -6 321 172 0 0 chr4 155041782 155041846 -47286501 + (CAGA)n Simple_repeat Simple_repeat 1 64 0 27 0 0 0 chr4 155042299 155042326 -47286021 + AT_rich Low_complexity Low_complexity 1 27 0 880 147 7 15 chr4 155043122 155043258 -47285089 - MER20 DNA MER1_type 0 219 85 996 163 0 17 chr4 155043262 155043434 -47284913 - FAM SINE Alu -7 42 1 358 221 11 74 chr4 155043442 155043537 -47284810 - MER20 DNA MER1_type -128 91 3 815 184 14 0 chr4 155043951 155044134 -47284213 + FRAM SINE Alu 5 189 0 1384 183 38 31 chr4 155044214 155044503 -47283844 + AluJb SINE Alu 21 311 -1 221 305 118 82 chr4 155045112 155045529 -47282818 + L2 LINE L2 2827 3258 -14 429 54 0 0 chr4 155046874 155046930 -47281417 + (TG)n Simple_repeat Simple_repeat 1 56 0 416 155 0 0 chr4 155046958 155047016 -47281331 + AluJ/FLAM SINE Alu 9 66 -246 1864 153 3 32 chr4 155047107 155047421 -47280926 + AluJo SINE Alu 1 305 -7 451 236 91 0 chr4 155047961 155048071 -47280276 + L2 LINE L2 3194 3313 0 22 0 0 0 chr4 155051278 155051300 -47277047 + AT_rich Low_complexity Low_complexity 1 22 0 4433 150 49 33 chr4 155051621 155052622 -47275725 + L1MB7 LINE L1 5111 6126 -58 1453 112 36 5 chr4 155057610 155057834 -47270513 - L1MD3 LINE L1 0 7995 7765 24 32 0 0 chr4 155059568 155059599 -47268748 + AT_rich Low_complexity Low_complexity 1 31 0 1359 123 83 20 chr4 155059609 155059862 -47268485 + L1MB3 LINE L1 5914 6182 -1 316 284 12 0 chr4 155060244 155060325 -47268022 - MIR3 SINE MIR -5 203 122 447 35 0 0 chr4 155060327 155060384 -47267963 + (GA)n Simple_repeat Simple_repeat 2 58 0 238 301 190 25 chr4 155063273 155063436 -47264911 - MIR3 SINE MIR -18 190 1 270 241 71 27 chr4 155063778 155063890 -47264457 + L1ME4a LINE L1 5975 6091 -30 814 272 41 24 chr4 155064027 155064273 -47264074 - MIR SINE MIR -11 251 2 827 21 0 0 chr4 155064280 155064373 -47263974 - AluY SINE Alu -13 298 206 2180 118 0 7 chr4 155064420 155064726 -47263621 + AluSx SINE Alu 1 304 -8 232 354 56 30 chr4 155065578 155065776 -47262571 - L2 LINE L2 -668 2646 2444 664 280 84 40 chr4 155066253 155066328 -47262019 + L1ME3A LINE L1 5583 5653 -517 6227 176 79 40 chr4 155066328 155067414 -47260933 + Charlie1a DNA MER1_type 2 1155 -1606 1780 107 55 48 chr4 155067414 155067703 -47260644 + AluSx SINE Alu 1 291 -21 6227 176 79 40 chr4 155067703 155068012 -47260335 + Charlie1a DNA MER1_type 1155 1451 -4 664 280 84 40 chr4 155068012 155068307 -47260040 + L1ME3A LINE L1 5653 5969 -201 2918 85 3 3 chr4 155069005 155069369 -47258978 - THE1B LTR MaLR 0 364 1 316 306 27 18 chr4 155070129 155070240 -47258107 + L2 LINE L2 3111 3222 -50 192 77 0 0 chr4 155070263 155070289 -47258058 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 563 268 65 41 chr4 155070325 155070616 -47257731 - L3 LINE CR1 -279 1298 1001 275 243 48 19 chr4 155070691 155070794 -47257553 + HAL1b LINE L1 1236 1341 -7 25 31 0 0 chr4 155070814 155070846 -47257501 + AT_rich Low_complexity Low_complexity 1 32 0 256 282 0 14 chr4 155071399 155071470 -47256877 - L2 LINE L2 -92 3180 3111 386 202 41 80 chr4 155071970 155072146 -47256201 - MIR SINE MIR -65 143 5 591 187 111 70 chr4 155072311 155072482 -47255865 + MER5B DNA MER1_type 1 178 0 281 307 134 11 chr4 155072597 155072776 -47255571 - MIR SINE MIR -4 258 58 802 198 88 125 chr4 155072887 155073215 -47255132 - MER102a DNA MER1_type -11 319 4 2211 186 14 0 chr4 155074325 155074685 -47253662 + MLT1A1 LTR MaLR 1 365 0 2444 60 0 3 chr4 155074913 155075212 -47253135 - AluY SINE Alu -13 298 1 1510 136 5 9 chr4 155077362 155077612 -47250735 + AluSx SINE Alu 64 312 0 480 199 76 23 chr4 155078219 155078350 -47249997 - MIR SINE MIR -24 238 101 1803 232 117 19 chr4 155078496 155078958 -47249389 + MLT1J LTR MaLR 5 511 0 951 134 0 4 chr4 155079273 155079489 -47248858 - AluJb SINE Alu -16 296 2 1090 183 28 33 chr4 155079559 155079772 -47248575 - MER20 DNA MER1_type -4 215 4 444 223 48 108 chr4 155081493 155081595 -47246752 - MER112 DNA MER1_type 0 260 170 1443 173 77 11 chr4 155081595 155081867 -47246480 + AluJb SINE Alu 5 294 -18 444 223 48 108 chr4 155081867 155081930 -47246417 - MER112 DNA MER1_type -90 170 105 213 175 0 0 chr4 155081958 155081998 -47246349 + CT-rich Low_complexity Low_complexity 2 41 0 339 65 0 0 chr4 155084041 155084087 -47244260 + (TG)n Simple_repeat Simple_repeat 1 46 0 970 254 165 12 chr4 155084549 155085062 -47243285 + L2 LINE L2 2703 3312 -1 1995 146 0 13 chr4 155085063 155085371 -47242976 - AluJb SINE Alu -8 304 1 2362 76 0 0 chr4 155086395 155086685 -47241662 - AluSg1 SINE Alu -19 290 1 285 100 0 0 chr4 155086690 155086740 -47241607 + (A)n Simple_repeat Simple_repeat 1 50 0 1872 150 7 26 chr4 155087710 155088016 -47240331 - AluJo SINE Alu -12 300 1 2607 177 76 93 chr4 155088191 155088931 -47239416 + LTR8A LTR ERV1 1 727 0 490 269 97 29 chr4 155089597 155089835 -47238512 - L1MC4a LINE L1 -1922 5886 5633 2009 127 10 13 chr4 155089909 155090208 -47238139 - AluSx SINE Alu -14 298 1 1969 138 0 36 chr4 155090836 155091141 -47237206 - AluSx SINE Alu -18 294 1 2045 126 0 0 chr4 155091413 155091743 -47236604 - AluSx SINE Alu 0 330 1 4203 151 50 7 chr4 155091782 155092458 -47235889 + MER44D DNA MER2_type 1 705 0 216 350 112 17 chr4 155092608 155092902 -47235445 - L2 LINE L2 -534 2780 2459 1176 150 84 40 chr4 155092943 155093169 -47235178 + MER46A DNA MER2_type 1 236 0 1369 261 92 15 chr4 155093195 155093522 -47234825 + LTR16C LTR ERVL 67 367 -124 270 0 0 0 chr4 155093522 155093552 -47234795 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2222 93 0 53 chr4 155093557 155093879 -47234468 + AluSx SINE Alu 1 305 -7 1369 261 92 15 chr4 155093879 155093936 -47234411 + LTR16C LTR ERVL 370 487 -4 784 165 0 0 chr4 155094962 155095077 -47233270 - FLAM_A SINE Alu -20 122 8 436 214 97 35 chr4 155095958 155096103 -47232244 - L1ME3A LINE L1 -30 6140 5987 880 398 207 13 chr4 155096286 155096600 -47231747 - THE1C LTR MaLR 0 375 1 202 132 26 26 chr4 155096673 155096711 -47231636 - MIR SINE MIR -140 68 31 456 298 43 23 chr4 155097152 155097337 -47231010 + MIR SINE MIR 11 203 -59 922 262 74 10 chr4 155099883 155100192 -47228155 - MER46C DNA MER2_type -1 337 9 264 268 222 20 chr4 155102970 155103123 -47225224 - MIR3 SINE MIR -6 202 19 351 213 153 69 chr4 155103391 155103607 -47224740 - LTR33A LTR ERVL -220 303 70 329 296 83 0 chr4 155105788 155105896 -47222451 - MIR SINE MIR -69 193 77 773 265 86 64 chr4 155106267 155106735 -47221612 + LTR33 LTR ERVL 44 521 0 484 256 0 17 chr4 155106742 155106859 -47221488 - L2 LINE L2 -1 3312 3198 213 209 35 105 chr4 155107782 155107868 -47220479 + MIR SINE MIR 114 193 -69 204 40 0 0 chr4 155108217 155108242 -47220105 + (TTCTCC)n Simple_repeat Simple_repeat 6 30 0 186 189 0 0 chr4 155108444 155108481 -47219866 + GA-rich Low_complexity Low_complexity 1 37 0 199 329 29 0 chr4 155108844 155108914 -47219433 - L2 LINE L2 -54 3259 3188 273 314 0 0 chr4 155109234 155109320 -47219027 - Charlie8 DNA MER1_type -2236 181 96 3949 170 49 15 chr4 155109651 155110363 -47217984 + L1MB3 LINE L1 5448 6183 0 317 269 76 25 chr4 155110392 155110511 -47217836 - L3 LINE CR1 -239 1338 1214 1030 170 70 31 chr4 155112281 155112510 -47215837 + ORSL DNA AcHobo 33 270 -5 779 249 87 95 chr4 155112515 155112904 -47215443 + L2 LINE L2 2928 3313 0 443 315 158 29 chr4 155113496 155113972 -47214375 - MLT1K LTR MaLR -50 538 2 518 357 45 19 chr4 155116579 155116957 -47211390 - LTR16C LTR ERVL -32 459 72 184 369 157 31 chr4 155118167 155118739 -47209608 - L2 LINE L2 -346 2968 2325 2235 120 7 0 chr4 155118938 155119247 -47209100 - AluY SINE Alu 0 311 1 2066 230 69 0 chr4 155119250 155119741 -47208606 - L1MC4 LINE L1 -197 7845 7321 1622 205 43 9 chr4 155119843 155120190 -47208157 - L1MC4 LINE L1 -957 7085 6727 255 264 28 0 chr4 155120508 155120580 -47207767 + GA-rich Low_complexity Low_complexity 2 75 0 274 330 21 21 chr4 155120620 155120714 -47207633 + MIR SINE MIR 33 126 -82 4706 162 18 73 chr4 155120725 155121909 -47206438 - L1MD1 LINE L1 0 6242 5118 2464 86 115 0 chr4 155122045 155122393 -47205954 - L1P LINE L1 -5746 400 13 2339 172 30 38 chr4 155122388 155122537 -47205810 - L1 LINE L1 -1675 4471 4322 * 2061 145 3 0 chr4 155122537 155122834 -47205513 - AluSq SINE Alu -15 298 1 2339 172 30 38 chr4 155122834 155123213 -47205134 - L1 LINE L1 -1824 4322 3947 1129 196 14 14 chr4 155123215 155123429 -47204918 + MSTB LTR MaLR 1 214 -212 1444 163 4 0 chr4 155124278 155124518 -47203829 + AluSg/x SINE Alu 71 311 -1 1876 186 8 22 chr4 155124831 155125201 -47203146 + MLT1A1 LTR MaLR 1 365 0 297 348 0 0 chr4 155125256 155125345 -47203002 - MIR SINE MIR -94 114 26 376 303 37 0 chr4 155125598 155125707 -47202640 - MER81 DNA DNA -1 113 1 412 254 66 16 chr4 155125784 155125906 -47202441 - L2 LINE L2 -4 3309 3182 216 0 0 0 chr4 155125983 155126007 -47202340 + (CCA)n Simple_repeat Simple_repeat 1 24 0 268 349 7 0 chr4 155126353 155126505 -47201842 + L1MEc LINE L1 172 324 -6072 415 242 109 71 chr4 155126516 155126727 -47201620 + L2 LINE L2 3094 3312 -1 1533 129 4 38 chr4 155126792 155127032 -47201315 + AluSg/x SINE Alu 66 297 -15 752 119 0 0 chr4 155127201 155127310 -47201037 + HY1 scRNA scRNA 1 109 -3 22 0 0 0 chr4 155127310 155127332 -47201015 + AT_rich Low_complexity Low_complexity 1 22 0 318 26 0 0 chr4 155127562 155127601 -47200746 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 735 168 0 0 chr4 155127603 155127746 -47200601 + GA-rich Low_complexity Low_complexity 1 143 0 276 30 0 0 chr4 155127747 155127780 -47200567 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 700 231 147 37 chr4 155127938 155128237 -47200110 - MLT1G LTR MaLR -212 378 47 1070 187 18 18 chr4 155128345 155128564 -47199783 + AluJb SINE Alu 1 219 -93 2276 132 0 0 chr4 155128735 155129046 -47199301 - AluSx SINE Alu -1 311 1 6954 249 49 20 chr4 155129149 155131687 -47196660 - L1MDa LINE L1 -1158 5690 3078 1436 164 0 0 chr4 155131712 155131925 -47196422 - AluSx SINE Alu -99 213 1 1694 176 7 29 chr4 155131934 155132240 -47196107 - AluJo SINE Alu -13 299 1 306 195 26 0 chr4 155132258 155132335 -47196012 - L1MDa LINE L1 -4178 2670 2592 6765 212 39 14 chr4 155132435 155132558 -47195789 + L1M2 LINE L1 2646 2764 -4084 2164 116 3 19 chr4 155132558 155132876 -47195471 + AluSp SINE Alu 1 313 0 6765 212 39 14 chr4 155132876 155134701 -47193646 + L1M2 LINE L1 2764 4647 -2201 499 308 56 8 chr4 155134701 155134935 -47193412 - MSTB1 LTR MaLR 0 432 188 784 155 0 28 chr4 155135046 155135227 -47193120 + CT-rich Low_complexity Low_complexity 1 176 0 342 138 0 38 chr4 155135227 155135307 -47193040 + (TTCC)n Simple_repeat Simple_repeat 1 77 0 1888 173 16 0 chr4 155135307 155135613 -47192734 - AluSx SINE Alu -1 311 1 3002 208 29 32 chr4 155135613 155136525 -47191822 - L1M4 LINE L1 -4654 2195 1266 263 254 0 0 chr4 155137205 155137272 -47191075 - L1MC/D LINE L1 -2052 5756 5690 663 320 22 4 chr4 155137659 155137884 -47190463 - MIR SINE MIR -6 256 28 404 253 71 55 chr4 155138124 155138219 -47190128 - L1ME4a LINE L1 -113 6008 5916 1520 192 13 39 chr4 155138219 155138527 -47189820 - AluJo SINE Alu -12 300 1 404 253 71 55 chr4 155138527 155138739 -47189608 - L1ME4a LINE L1 -205 5916 5696 237 169 220 0 chr4 155139506 155139565 -47188782 - AluS SINE Alu -231 72 1 517 273 19 25 chr4 155139667 155139828 -47188519 + MIR SINE MIR 103 262 0 279 238 38 9 chr4 155139849 155139954 -47188393 + MER103 DNA DNA 13 120 -46 1752 174 7 10 chr4 155140334 155140632 -47187715 - AluJb SINE Alu -15 297 1 647 217 39 66 chr4 155140808 155141066 -47187281 - L1MB8 LINE L1 -1 6177 5927 302 176 0 0 chr4 155141110 155141161 -47187186 - AluJb SINE Alu -192 110 60 2526 83 3 0 chr4 155141349 155141661 -47186686 - AluSp SINE Alu 0 313 1 6236 140 24 11 chr4 155142003 155143854 -47184493 - L1MA3 LINE L1 0 7724 5848 * 14010 160 29 22 chr4 155143837 155147359 -47180988 - L1MA3 LINE L1 -2875 4690 1139 37692 36 2 0 chr4 155147460 155153027 -47175320 + L1PA4 LINE L1 575 6152 -3 1630 197 5 23 chr4 155153039 155153471 -47174876 + L1 LINE L1 4453 4876 -1270 29158 104 10 9 chr4 155153638 155159368 -47168979 - L1PA7 LINE L1 0 6469 722 191 372 145 11 chr4 155159714 155159996 -47168351 + L2 LINE L2 574 893 -2421 408 294 67 50 chr4 155159996 155160234 -47168113 + L2 LINE L2 2036 2277 -1037 2611 151 17 70 chr4 155160377 155160973 -47167374 + L1MB3 LINE L1 5616 6179 -4 449 234 48 14 chr4 155161036 155161181 -47167166 - HsTC2a DNA Tc2 -19 723 574 266 218 0 0 chr4 155161198 155161253 -47167094 - AluJ/monomer SINE Alu -8 294 240 1844 172 0 3 chr4 155161385 155161704 -47166643 - AluJo SINE Alu 0 318 1 1410 221 56 41 chr4 155161704 155162231 -47166116 - HsTC2a DNA Tc2 -163 581 128 360 281 10 0 chr4 155162369 155162465 -47165882 - HsTC2a DNA Tc2 -541 203 107 405 196 54 0 chr4 155162519 155162611 -47165736 + L1MDa LINE L1 17 113 -6427 971 162 56 0 chr4 155162612 155162810 -47165537 + L1MDa LINE L1 1971 2179 -4361 210 37 0 0 chr4 155162933 155162960 -47165387 + (TG)n Simple_repeat Simple_repeat 1 27 0 25 31 0 0 chr4 155163734 155163766 -47164581 + AT_rich Low_complexity Low_complexity 1 32 0 2423 58 0 7 chr4 155163889 155164184 -47164163 + AluY SINE Alu 3 295 -16 935 160 8 114 chr4 155166683 155166757 -47161590 + L1MA3 LINE L1 6071 6151 -154 1451 174 72 38 chr4 155166757 155167050 -47161297 + AluJo SINE Alu 1 303 -9 935 160 8 114 chr4 155167050 155167238 -47161109 + L1MA3 LINE L1 6151 6305 0 22 0 0 0 chr4 155169003 155169025 -47159322 + AT_rich Low_complexity Low_complexity 1 22 0 482 159 25 0 chr4 155170321 155170422 -47157925 - L1 LINE L1 -1191 4955 4851 21 0 0 0 chr4 155171618 155171639 -47156708 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 155171999 155172023 -47156324 + AT_rich Low_complexity Low_complexity 1 24 0 530 260 69 87 chr4 155172147 155172291 -47156056 + L1ME4a LINE L1 5561 5706 -415 1788 171 3 13 chr4 155172291 155172590 -47155757 + AluJo SINE Alu 5 300 -12 530 260 69 87 chr4 155172590 155172949 -47155398 + L1ME4a LINE L1 5706 6055 -66 2574 55 0 0 chr4 155174323 155174630 -47153717 + AluY SINE Alu 1 307 -4 3938 172 27 78 chr4 155174865 155175595 -47152752 - L1MC1 LINE L1 -3 6610 5939 1992 118 3 3 chr4 155175595 155175883 -47152464 - AluSx SINE Alu -11 301 14 3938 172 27 78 chr4 155175883 155176119 -47152228 - L1MC1 LINE L1 -674 5939 5693 7300 234 21 18 chr4 155176124 155178240 -47150107 - L1MC1 LINE L1 -1845 4581 2461 837 195 13 6 chr4 155178245 155178404 -47149943 - FRAM SINE Alu -19 157 1 698 218 0 0 chr4 155178444 155178568 -47149779 - L1MC1 LINE L1 -6302 124 1 6589 131 15 16 chr4 155178840 155180304 -47148043 - L1MA5 LINE L1 -4 6296 4828 979 97 5 38 chr4 155180489 155180562 -47147785 + (TTTC)n Simple_repeat Simple_repeat 1 249 0 979 97 5 38 chr4 155180562 155180747 -47147600 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 212 122 24 0 chr4 155180783 155180824 -47147523 + CT-rich Low_complexity Low_complexity 1 42 0 2049 107 0 14 chr4 155180825 155181105 -47147242 - AluSc SINE Alu -33 276 1 22 0 0 0 chr4 155181361 155181383 -47146964 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr4 155181896 155181933 -47146414 + AT_rich Low_complexity Low_complexity 1 37 0 866 324 48 52 chr4 155182359 155182762 -47145585 - L1M4 LINE L1 -1121 5025 4625 2108 171 11 3 chr4 155182762 155183124 -47145223 + MLT1A1 LTR MaLR 1 365 0 866 324 48 52 chr4 155183124 155183387 -47144960 - L1M4 LINE L1 -1521 4625 4362 235 333 71 0 chr4 155183828 155183969 -47144378 - L1M4 LINE L1 -1945 4201 4051 692 251 63 6 chr4 155184221 155184396 -47143951 + MER5A DNA MER1_type 4 188 -1 2158 131 34 8 chr4 155184403 155184785 -47143562 + L1MB1 LINE L1 5777 6168 0 1560 219 119 25 chr4 155185112 155185583 -47142764 + L2 LINE L2 1708 2222 -1092 467 235 0 9 chr4 155185585 155185700 -47142647 + MER53 DNA DNA 1 114 -75 28 61 0 0 chr4 155185700 155185749 -47142598 + AT_rich Low_complexity Low_complexity 1 49 0 391 175 21 21 chr4 155185793 155185890 -47142457 + MER53 DNA DNA 93 189 0 2423 253 54 16 chr4 155185908 155186733 -47141614 + L2 LINE L2 2230 3096 -217 225 0 0 0 chr4 155186733 155186758 -47141589 + (CA)n Simple_repeat Simple_repeat 1 25 0 2423 253 54 16 chr4 155186758 155186851 -47141496 + L2 LINE L2 3096 3184 -129 2380 76 3 0 chr4 155186965 155187256 -47141091 - AluY SINE Alu -19 292 1 410 208 69 0 chr4 155187479 155187580 -47140767 - FLAM_C SINE Alu -4 139 32 1893 159 0 13 chr4 155187689 155187991 -47140356 + AluJo SINE Alu 1 298 -14 376 270 30 42 chr4 155188774 155188947 -47139400 - MER5B DNA MER1_type -6 172 1 297 320 40 0 chr4 155189568 155189693 -47138654 - L3 LINE CR1 -753 824 695 305 303 206 30 chr4 155191163 155191328 -47137019 - MIR3 SINE MIR -11 197 4 479 191 40 7 chr4 155192240 155192392 -47135955 - Charlie5 DNA MER1_type 0 2624 2468 422 136 11 34 chr4 155192370 155192458 -47135889 - Charlie5 DNA MER1_type -2525 87 2 * 2336 134 14 85 chr4 155192574 155192947 -47135400 - MLT2D LTR ERVL 0 414 76 1721 161 7 18 chr4 155192947 155193267 -47135080 - AluJo SINE Alu 0 317 1 2336 134 14 85 chr4 155193267 155193338 -47135009 - MLT2D LTR ERVL -338 76 1 230 135 39 0 chr4 155193414 155193466 -47134881 + HSMAR1 DNA Mariner 1234 1287 0 366 275 67 20 chr4 155194245 155194394 -47133953 + LTR67 LTR ERVL 395 550 -7 4765 202 91 15 chr4 155194487 155194709 -47133638 - Charlie1 DNA MER1_type -4 2757 2553 2061 133 10 3 chr4 155194709 155195009 -47133338 + AluSx SINE Alu 3 304 -8 4765 202 91 15 chr4 155195009 155196139 -47132208 - Charlie1 DNA MER1_type -208 2553 1 630 165 0 50 chr4 155196759 155196880 -47131467 - Tigger1 DNA MER2_type -14 2404 2290 2765 170 47 10 chr4 155196880 155197533 -47130814 - L1MA4A LINE L1 -1206 4940 4207 * 6629 129 10 9 chr4 155197531 155198885 -47129462 + L1MA4A LINE L1 4944 6301 -2 14262 119 48 7 chr4 155198889 155201090 -47127257 - Tigger1 DNA MER2_type -104 2314 24 29 47 0 0 chr4 155201166 155201209 -47127138 + AT_rich Low_complexity Low_complexity 1 43 0 521 281 58 63 chr4 155201685 155201799 -47126548 + L1ME3A LINE L1 5493 5606 -564 1093 211 57 97 chr4 155201799 155202201 -47126146 - MLT1B LTR MaLR -4 386 1 521 281 58 63 chr4 155202201 155202517 -47125830 + L1ME3A LINE L1 5606 5921 -249 283 292 70 39 chr4 155202866 155203031 -47125316 + MIR SINE MIR 31 208 -54 597 234 39 0 chr4 155203470 155203598 -47124749 - FLAM_A SINE Alu 0 133 1 1979 116 12 44 chr4 155203889 155204173 -47124174 + AluSp SINE Alu 1 275 -38 186 43 0 0 chr4 155204173 155204196 -47124151 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1979 116 12 44 chr4 155204196 155204231 -47124116 + AluSp SINE Alu 275 310 -3 312 196 0 0 chr4 155204392 155204448 -47123899 + MER91B DNA MER1_type 9 64 -126 1053 210 153 37 chr4 155206263 155206906 -47121441 - LTR41 LTR ERVL -16 779 1 444 285 97 12 chr4 155207561 155207726 -47120621 + MIR SINE MIR 72 250 -12 243 311 121 30 chr4 155210237 155210369 -47117978 + MIR SINE MIR 118 261 -1 22 0 0 0 chr4 155210822 155210844 -47117503 + AT_rich Low_complexity Low_complexity 1 22 0 922 269 106 43 chr4 155211137 155211486 -47116861 - MLT1I LTR MaLR -6 403 33 486 274 9 91 chr4 155211781 155212000 -47116347 - MER102a DNA MER1_type -3 327 127 252 117 33 17 chr4 155212974 155213034 -47115313 + (TA)n Simple_repeat Simple_repeat 1 61 0 5735 108 33 8 chr4 155213065 155214857 -47113490 - L1PA16 LINE L1 -9 6157 4326 980 222 4 52 chr4 155214963 155215149 -47113198 + MER58A DNA MER1_type 5 198 -2222 1681 176 0 30 chr4 155215149 155215444 -47112903 + AluJb SINE Alu 1 286 -26 183 80 0 0 chr4 155215449 155215474 -47112873 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 980 222 4 52 chr4 155215474 155215511 -47112836 + MER58A DNA MER1_type 202 223 -1 293 215 89 0 chr4 155215511 155215590 -47112757 - L1ME4a LINE L1 -87 6034 5949 702 183 128 6 chr4 155215629 155215793 -47112554 + MER3 DNA MER1_type 21 204 -5 687 293 69 30 chr4 155215808 155216170 -47112177 - L1ME4a LINE L1 -241 5880 5505 1931 115 0 7 chr4 155216620 155216899 -47111448 + AluY SINE Alu 3 279 -32 890 50 8 0 chr4 155216900 155217020 -47111327 + (GA)n Simple_repeat Simple_repeat 2 122 0 374 306 135 10 chr4 155217121 155217314 -47111033 + MIR SINE MIR 16 232 -30 225 0 0 0 chr4 155217758 155217783 -47110564 + (T)n Simple_repeat Simple_repeat 1 25 0 2271 101 3 0 chr4 155219005 155219301 -47109046 + AluSg SINE Alu 1 297 -13 970 140 0 0 chr4 155220151 155220294 -47108053 + Tigger3(Golem) DNA MER2_type 2886 3028 -1 675 291 69 14 chr4 155220310 155220732 -47107615 - L1 LINE L1 -2148 3998 3554 298 359 13 3 chr4 155220883 155221181 -47107166 - L1 LINE L1 -3698 2448 2148 25 31 0 0 chr4 155221913 155221945 -47106402 + AT_rich Low_complexity Low_complexity 1 32 0 587 324 122 25 chr4 155221976 155222541 -47105806 - L1M4 LINE L1 -3316 2830 2211 430 286 34 17 chr4 155222592 155222711 -47105636 + MIR SINE MIR 39 159 -103 195 360 79 0 chr4 155224900 155224989 -47103358 - MIR SINE MIR -83 125 30 205 258 45 15 chr4 155225361 155225427 -47102920 - MIR SINE MIR 0 262 195 202 200 0 0 chr4 155225454 155225489 -47102858 - MIR SINE MIR -200 62 28 454 221 53 53 chr4 155226145 155226276 -47102071 + L3 LINE CR1 1442 1572 -5 1084 208 25 17 chr4 155226357 155226593 -47101754 + MIR SINE MIR 25 262 0 351 0 0 0 chr4 155226952 155226991 -47101356 + (CA)n Simple_repeat Simple_repeat 1 39 0 254 321 107 0 chr4 155227263 155227375 -47100972 - L2 LINE L2 -181 3091 2968 219 69 0 0 chr4 155227377 155227406 -47100941 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 605 306 56 5 chr4 155227444 155227640 -47100707 + MIR SINE MIR 25 230 -32 206 320 196 5 chr4 155228114 155228308 -47100039 - MIR SINE MIR -1 261 31 439 207 35 112 chr4 155228758 155228927 -47099420 + MIR SINE MIR 37 192 -70 21 0 0 0 chr4 155229366 155229387 -47098960 + AT_rich Low_complexity Low_complexity 1 21 0 836 162 9 65 chr4 155230114 155230341 -47098006 - MLT2B3 LTR ERVL -1 515 319 1631 176 38 68 chr4 155230946 155231316 -47097031 - MLT2B3 LTR ERVL -192 362 4 2160 184 58 12 chr4 155231762 155232175 -47096172 + MSTB1 LTR MaLR 1 432 0 437 260 36 68 chr4 155232556 155232748 -47095599 + LTR67 LTR ERVL 99 284 -273 654 291 27 35 chr4 155232776 155233034 -47095313 - LTR16B LTR ERVL -4 460 205 266 203 0 16 chr4 155233034 155233098 -47095249 - MLT1D LTR MaLR 0 626 564 631 118 0 146 chr4 155233099 155233243 -47095104 + L1MA9 LINE L1 6092 6214 -98 1342 186 198 3 chr4 155233245 155233578 -47094769 - MLT1D LTR MaLR -57 448 51 362 274 24 113 chr4 155233593 155233805 -47094542 + LTR67 LTR ERVL 329 521 -36 826 301 42 45 chr4 155233884 155234263 -47094084 + MLT1J LTR MaLR 99 476 -35 486 341 75 0 chr4 155235426 155235652 -47092695 + ERVL LTR ERVL 2293 2535 -3229 695 231 26 6 chr4 155235690 155235846 -47092501 - MER58A DNA MER1_type -15 209 51 1049 185 0 0 chr4 155235859 155236032 -47092315 + L1MC3 LINE L1 6688 6860 -925 2574 149 101 94 chr4 155236080 155236314 -47092033 + L1MC3 LINE L1 6855 7086 -699 249 246 46 0 chr4 155236314 155236379 -47091968 + MLT1F1 LTR MaLR 35 102 -465 2574 149 101 94 chr4 155236379 155236663 -47091684 + L1MC3 LINE L1 7086 7446 -339 711 218 0 0 chr4 155236663 155236787 -47091560 + FLAM_A SINE Alu 2 125 -8 2574 149 101 94 chr4 155236787 155236949 -47091398 + L1MC3 LINE L1 7446 7605 -180 667 172 74 12 chr4 155237198 155237361 -47090986 + L1MC3 LINE L1 7591 7763 -22 233 273 0 78 chr4 155237361 155237438 -47090909 - MER58A DNA MER1_type -36 71 1 1044 311 44 44 chr4 155237468 155237944 -47090403 + ERVL LTR ERVL 2620 3095 -2669 318 266 32 0 chr4 155241014 155241108 -47087239 + L2 LINE L2 2942 3038 -234 1649 151 50 29 chr4 155241443 155241721 -47086626 + AluJb SINE Alu 1 284 -28 233 29 0 29 chr4 155241721 155241756 -47086591 + (TTAAA)n Simple_repeat Simple_repeat 3 36 0 2538 220 19 17 chr4 155242028 155242546 -47085801 - LTR40a LTR ERVL 0 519 1 902 236 31 50 chr4 155242546 155242805 -47085542 - HERVL40 LTR ERVL 0 5530 5277 809 306 70 28 chr4 155242774 155243172 -47085175 - MER89-int LTR ERV1 -306 6495 6081 * 522 251 141 65 chr4 155243279 155243634 -47084713 + L2 LINE L2 2927 3308 -5 1690 186 60 73 chr4 155243680 155244148 -47084199 + MLT1C LTR MaLR 6 467 0 480 18 0 0 chr4 155245268 155245325 -47083022 + (CA)n Simple_repeat Simple_repeat 1 57 0 1499 193 68 42 chr4 155248021 155248446 -47079901 - MER63B DNA MER1_type 0 436 1 185 0 0 39 chr4 155248881 155248907 -47079440 + (CAGGA)n Simple_repeat Simple_repeat 5 29 0 1306 145 10 14 chr4 155248912 155249119 -47079228 + AluJo SINE Alu 14 219 -93 189 0 0 0 chr4 155249129 155249150 -47079197 + (CAA)n Simple_repeat Simple_repeat 1 21 0 957 188 61 0 chr4 155249423 155249588 -47078759 + FAM SINE Alu 1 175 0 256 279 25 13 chr4 155249672 155249751 -47078596 + L2 LINE L2 1942 2021 -1293 1774 190 42 3 chr4 155249782 155250114 -47078233 - MLT2C1 LTR ERVL -52 345 1 402 217 28 28 chr4 155250602 155250708 -47077639 - MER103 DNA DNA -1 165 60 412 296 47 12 chr4 155250743 155250912 -47077435 + L2 LINE L2 2233 2407 -907 267 302 54 13 chr4 155251862 155252011 -47076336 + L1ME4a LINE L1 5967 6121 0 1152 199 0 0 chr4 155253056 155253257 -47075090 + MER3 DNA MER1_type 1 201 -8 910 260 46 16 chr4 155253713 155253932 -47074415 - LTR33 LTR ERVL 0 521 310 2428 75 0 0 chr4 155253932 155254225 -47074122 + AluSq SINE Alu 11 303 -10 910 260 46 16 chr4 155254225 155254426 -47073921 - LTR33 LTR ERVL -211 310 20 1389 226 96 77 chr4 155255180 155255724 -47072623 + MLT1H1 LTR MaLR 1 554 -1 261 323 42 0 chr4 155256050 155256146 -47072201 + HERV16 LTR ERVL 102 201 -4795 215 91 0 23 chr4 155256376 155256420 -47071927 + (TA)n Simple_repeat Simple_repeat 2 44 0 272 398 24 8 chr4 155256759 155257005 -47071342 + HERV16 LTR ERVL 880 1129 -3867 265 374 20 10 chr4 155257153 155257348 -47070999 + HERV16 LTR ERVL 1389 1585 -4179 1645 322 82 27 chr4 155257498 155257972 -47070375 + HERV16 LTR ERVL 1774 2313 -3451 1158 204 58 0 chr4 155257972 155258178 -47070169 - MER20 DNA MER1_type -1 218 1 1645 322 82 27 chr4 155258178 155258525 -47069822 + HERV16 LTR ERVL 2313 2640 -3124 1070 243 70 68 chr4 155258534 155258949 -47069398 - LTR40c LTR ERVL -4 461 46 1385 183 29 25 chr4 155259001 155259280 -47069067 + MLT1A1 LTR MaLR 1 280 -85 1015 305 26 38 chr4 155259280 155259697 -47068650 + HERV16 LTR ERVL 2652 3063 -2701 477 373 63 0 chr4 155259695 155259950 -47068397 + HERV16 LTR ERVL 3421 3691 -2073 * 973 197 43 29 chr4 155259965 155260173 -47068174 + LTR53 LTR ERVL 309 519 0 261 0 0 0 chr4 155260333 155260362 -47067985 + (A)n Simple_repeat Simple_repeat 1 29 0 3197 208 23 22 chr4 155261451 155262075 -47066272 - L1MCa LINE L1 -4851 1194 841 2258 132 0 0 chr4 155262075 155262378 -47065969 - AluSx SINE Alu -9 303 1 3197 208 23 22 chr4 155262378 155262747 -47065600 - L1MCa LINE L1 -5204 841 474 2408 118 29 0 chr4 155262753 155263102 -47065245 + MER47A DNA MER2_type 8 366 0 2043 191 64 7 chr4 155263108 155263516 -47064831 - L1MCa LINE L1 -5972 592 162 212 358 153 22 chr4 155264244 155264381 -47063966 + MER5A DNA MER1_type 35 189 0 616 319 58 12 chr4 155264688 155264929 -47063418 - MIR SINE MIR 0 262 11 252 0 0 0 chr4 155267505 155267533 -47060814 + (A)n Simple_repeat Simple_repeat 1 28 0 9413 137 14 16 chr4 155267692 155268253 -47060094 + Tigger2 DNA MER2_type 1 562 -2156 2290 118 0 0 chr4 155268253 155268559 -47059788 - AluSg SINE Alu -4 306 1 9413 137 14 16 chr4 155268559 155269514 -47058833 + Tigger2 DNA MER2_type 562 1514 -1204 705 159 14 36 chr4 155269521 155269659 -47058688 - FLAM_C SINE Alu 0 143 9 6701 114 43 14 chr4 155269659 155270664 -47057683 + Tigger2 DNA MER2_type 1493 2526 -192 379 157 14 0 chr4 155270657 155270727 -47057620 - Tigger2 DNA MER2_type -717 2001 1931 * 1516 131 45 0 chr4 155270737 155270982 -47057365 + Tigger2 DNA MER2_type 2462 2717 -1 3149 97 28 7 chr4 155272372 155272755 -47055592 + MLT2A1 LTR ERVL 1 396 -48 279 0 0 0 chr4 155272755 155272786 -47055561 + (TG)n Simple_repeat Simple_repeat 2 32 0 3149 97 28 7 chr4 155272786 155272837 -47055510 + MLT2A1 LTR ERVL 396 444 0 983 221 53 78 chr4 155272931 155273252 -47055095 + MLT1G1 LTR MaLR 1 313 -282 240 198 10 129 chr4 155273342 155273443 -47054904 + MLT1G1 LTR MaLR 439 527 -15 553 178 12 245 chr4 155273507 155273803 -47054544 + MIR SINE MIR 3 218 -44 2039 205 26 18 chr4 155273803 155274193 -47054154 + MSTD LTR MaLR 3 395 -1 553 178 12 245 chr4 155274193 155274222 -47054125 + MIR SINE MIR 218 252 -10 282 192 128 0 chr4 155274235 155274313 -47054034 - MER69 DNA AcHobo -12 2514 2427 370 63 16 16 chr4 155274626 155274689 -47053658 + (TA)n Simple_repeat Simple_repeat 1 63 0 232 98 0 0 chr4 155274696 155274737 -47053610 - LTR66 LTR ERVL -172 438 398 5927 143 17 19 chr4 155275046 155276145 -47052202 + L1PB2 LINE L1 4508 5608 -543 1955 132 7 0 chr4 155276145 155276418 -47051929 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr4 155276424 155276444 -47051903 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 5927 143 17 19 chr4 155276444 155276985 -47051362 + L1PB2 LINE L1 5613 6151 0 28 0 0 0 chr4 155277013 155277041 -47051306 + AT_rich Low_complexity Low_complexity 1 28 0 4582 160 39 33 chr4 155277629 155277972 -47050375 - L1MB1 LINE L1 -12 6156 5817 1809 136 3 65 chr4 155277972 155278281 -47050066 - AluSg SINE Alu -20 290 1 4582 160 39 33 chr4 155278281 155278324 -47050023 - L1MB1 LINE L1 -351 5817 5776 2157 123 109 6 chr4 155278324 155278664 -47049683 + THE1C LTR MaLR 1 375 0 4582 160 39 33 chr4 155278664 155279125 -47049222 - L1MB1 LINE L1 -392 5776 5303 1524 175 70 18 chr4 155281612 155281897 -47046450 - AluJb SINE Alu -12 300 1 2048 202 3 6 chr4 155282023 155282389 -47045958 + MLT1A1 LTR MaLR 1 365 0 26 30 0 0 chr4 155282731 155282764 -47045583 + AT_rich Low_complexity Low_complexity 1 33 0 1213 24 36 0 chr4 155283820 155283988 -47044359 + (TTTC)n Simple_repeat Simple_repeat 3 176 0 1872 148 7 0 chr4 155283990 155284273 -47044074 - AluSx SINE Alu -27 285 1 198 0 0 0 chr4 155284547 155284569 -47043778 + (CAT)n Simple_repeat Simple_repeat 2 23 0 5705 132 24 37 chr4 155284795 155285818 -47042529 + L1MC1 LINE L1 5186 6190 -143 25 31 0 0 chr4 155286274 155286306 -47042041 + AT_rich Low_complexity Low_complexity 1 32 0 385 274 73 90 chr4 155288482 155288716 -47039631 - L1ME LINE L1 -337 5784 5555 215 31 31 0 chr4 155288770 155288802 -47039545 + (TG)n Simple_repeat Simple_repeat 2 34 0 820 218 5 36 chr4 155288829 155289022 -47039325 - MIR3 SINE MIR -16 192 6 212 54 54 0 chr4 155289377 155289414 -47038933 + T-rich Low_complexity Low_complexity 4 42 0 898 204 35 71 chr4 155289425 155289651 -47038696 - MER20 DNA MER1_type 0 219 2 212 246 98 0 chr4 155291619 155291680 -47036667 + MER5A DNA MER1_type 47 113 -76 308 279 103 88 chr4 155291862 155292124 -47036223 + L2 LINE L2 3000 3265 -7 183 310 0 0 chr4 155292472 155292530 -47035817 - MIR SINE MIR -107 155 98 751 206 63 11 chr4 155293852 155294027 -47034320 + MIR SINE MIR 61 244 -18 451 307 108 33 chr4 155294103 155294315 -47034032 + MIR SINE MIR 23 250 -12 307 296 11 0 chr4 155294430 155294518 -47033829 + MIR SINE MIR 173 261 -1 261 111 0 0 chr4 155295198 155295234 -47033113 + AluSc SINE Alu 255 290 -9 304 114 2 0 chr4 155295426 155295475 -47032872 - MLT1A1 LTR MaLR -5 384 319 807 65 0 19 chr4 155295502 155295610 -47032737 - L1PB2 LINE L1 -4 6147 6042 828 41 0 0 chr4 155295617 155295715 -47032632 - AluY SINE Alu -5 306 209 1061 198 82 50 chr4 155295715 155296033 -47032314 - MLT1A1 LTR MaLR -37 328 1 22 35 0 0 chr4 155296248 155296277 -47032070 + AT_rich Low_complexity Low_complexity 1 29 0 230 153 57 161 chr4 155296498 155296622 -47031725 - L1ME4a LINE L1 -3 6118 6008 513 235 73 59 chr4 155296742 155296946 -47031401 - L1ME4a LINE L1 -1993 5815 5609 338 306 71 35 chr4 155296979 155297149 -47031198 - L1ME4a LINE L1 -607 5514 5339 213 39 0 0 chr4 155297410 155297436 -47030911 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2310 114 0 0 chr4 155297480 155297788 -47030559 - AluSx SINE Alu -4 308 1 26 0 0 0 chr4 155300562 155300588 -47027759 + AT_rich Low_complexity Low_complexity 1 26 0 1957 160 0 10 chr4 155300737 155301044 -47027303 - AluJb SINE Alu -8 304 1 181 292 21 0 chr4 155304678 155304726 -47023621 - L2 LINE L2 -18 3254 3206 776 219 84 87 chr4 155305556 155305926 -47022421 - MLT1I LTR MaLR -40 369 1 2533 123 44 27 chr4 155305931 155306336 -47022011 - MLT2D LTR ERVL 0 414 3 287 174 58 29 chr4 155307176 155307245 -47021102 - MIR SINE MIR -61 147 77 939 291 4 4 chr4 155309405 155309649 -47018698 + MIR SINE MIR 18 261 -1 337 315 46 0 chr4 155310213 155310321 -47018026 + L2 LINE L2 3160 3272 0 381 252 75 0 chr4 155310765 155310872 -47017475 - MIR SINE MIR -72 190 76 2012 147 3 13 chr4 155311103 155311403 -47016944 + AluJb SINE Alu 1 297 -15 359 260 62 10 chr4 155312033 155312129 -47016218 - MIR3 SINE MIR -26 182 82 182 250 15 118 chr4 155312522 155312658 -47015689 - MIR SINE MIR -10 252 131 481 277 71 36 chr4 155312672 155312896 -47015451 + MIR SINE MIR 30 261 -1 1568 156 28 40 chr4 155313014 155313284 -47015063 + MER33 DNA MER1_type 1 268 -2317 2246 112 0 3 chr4 155313284 155313588 -47014759 - AluSx SINE Alu -9 303 1 1568 156 28 40 chr4 155313588 155313644 -47014703 + MER33 DNA MER1_type 268 323 -1 313 200 13 67 chr4 155314800 155314875 -47013472 - MER5A DNA MER1_type -118 71 1 348 24 0 0 chr4 155315238 155315279 -47013068 + (TG)n Simple_repeat Simple_repeat 1 41 0 846 176 0 0 chr4 155315490 155315621 -47012726 - FLAM_C SINE Alu -1 132 2 1095 140 6 12 chr4 155315834 155315998 -47012349 - AluJo SINE Alu -13 299 137 2157 121 3 3 chr4 155316531 155316829 -47011518 - AluSx SINE Alu -14 298 1 299 135 0 0 chr4 155318054 155318106 -47010241 - AluJo SINE Alu -169 133 82 1360 163 0 5 chr4 155318108 155318323 -47010024 - AluJo SINE Alu -98 214 1 651 137 0 7 chr4 155318605 155318725 -47009622 + L1MA9 LINE L1 6172 6286 -5 580 309 58 5 chr4 155318756 155318979 -47009368 - LTR16C LTR ERVL -2 489 255 1838 147 0 29 chr4 155319646 155319952 -47008395 + AluJb SINE Alu 1 297 -15 384 289 46 53 chr4 155320129 155320281 -47008066 + L2 LINE L2 3115 3265 -7 23 0 0 0 chr4 155320402 155320425 -47007922 + AT_rich Low_complexity Low_complexity 1 23 0 2071 105 3 21 chr4 155320706 155321027 -47007320 - AluY SINE Alu 0 316 1 348 286 64 0 chr4 155321037 155321177 -47007170 - L1ME LINE L1 -302 5819 5671 288 353 43 11 chr4 155321177 155321361 -47006986 - MLT1J LTR MaLR 0 511 322 438 214 139 119 chr4 155321487 155321739 -47006608 - MLT1L LTR MaLR -358 257 1 230 286 0 0 chr4 155321747 155321803 -47006544 - L1ME LINE L1 -2144 5664 5609 1425 204 85 9 chr4 155321822 155322150 -47006197 - L1MB4 LINE L1 0 6180 5828 336 353 27 16 chr4 155322149 155322336 -47006011 - L1ME LINE L1 -2193 5615 5427 * 2352 82 0 0 chr4 155322358 155322649 -47005698 + AluSc SINE Alu 1 291 -18 343 231 120 0 chr4 155323760 155323877 -47004470 + MIR SINE MIR 111 241 -21 241 157 0 57 chr4 155326732 155326802 -47001545 + (TATG)n Simple_repeat Simple_repeat 2 67 0 182 325 115 70 chr4 155327085 155327152 -47001195 + L2 LINE L2 3002 3065 -207 1804 197 22 14 chr4 155327152 155327513 -47000834 - MLT1A1 LTR MaLR 0 365 2 182 325 115 70 chr4 155327513 155327543 -47000804 + L2 LINE L2 3065 3092 -180 186 43 0 0 chr4 155327543 155327566 -47000781 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 1876 132 25 11 chr4 155327566 155327846 -47000501 - AluSx SINE Alu -28 284 1 182 325 115 70 chr4 155327846 155327989 -47000358 + L2 LINE L2 3091 3255 -17 280 318 190 11 chr4 155328247 155328426 -46999921 - MIR SINE MIR -29 233 23 36 62 0 0 chr4 155329543 155329607 -46998740 + AT_rich Low_complexity Low_complexity 1 64 0 220 337 12 0 chr4 155332416 155332502 -46995845 - MIR SINE MIR -14 248 162 693 234 224 61 chr4 155332973 155333447 -46994900 - MLT1H1 LTR MaLR 0 555 5 223 309 0 0 chr4 155333636 155333717 -46994630 + MIR SINE MIR 110 190 -72 2600 47 0 0 chr4 155333845 155334144 -46994203 - AluY SINE Alu -3 308 10 2336 114 0 0 chr4 155334176 155334482 -46993865 - AluSc SINE Alu -3 306 1 203 194 0 0 chr4 155334775 155334811 -46993536 + A-rich Low_complexity Low_complexity 1 36 0 313 203 68 14 chr4 155335764 155335838 -46992509 + L2 LINE L2 2697 2774 -540 612 265 157 34 chr4 155335949 155336273 -46992074 + L2 LINE L2 2942 3305 -8 1042 180 38 0 chr4 155336612 155336823 -46991524 - MER20 DNA MER1_type 0 219 1 281 282 91 9 chr4 155339080 155339190 -46989157 - MER5B DNA MER1_type -51 127 9 326 310 9 17 chr4 155339211 155339327 -46989020 + L2 LINE L2 3194 3308 -5 2116 103 0 0 chr4 155339373 155339636 -46988711 + AluSx SINE Alu 34 296 -16 1935 146 0 7 chr4 155341257 155341545 -46986802 - AluSx SINE Alu -16 296 11 246 283 40 10 chr4 155341559 155341658 -46986689 + MIR SINE MIR 88 189 -73 185 349 66 38 chr4 155341700 155341806 -46986541 + L2 LINE L2 3147 3255 -17 * 449 295 216 4 chr4 155341794 155342035 -46986312 + L2 LINE L2 3017 3308 -5 204 40 0 0 chr4 155343552 155343577 -46984770 + (T)n Simple_repeat Simple_repeat 1 25 0 946 43 17 0 chr4 155343622 155343739 -46984608 + AluY SINE Alu 173 291 -20 213 302 66 0 chr4 155344042 155344148 -46984199 - MIR SINE MIR -62 146 34 183 42 0 0 chr4 155346082 155346106 -46982241 + (CAGCC)n Simple_repeat Simple_repeat 1 24 0 511 264 118 0 chr4 155347963 155348141 -46980206 + MIR SINE MIR 56 254 -8 277 274 74 0 chr4 155349266 155349361 -46978986 - MIR SINE MIR 0 262 161 2225 47 0 0 chr4 155349929 155350185 -46978162 + AluY SINE Alu 1 256 -55 505 297 28 19 chr4 155350295 155350507 -46977840 + MIR SINE MIR 12 225 -37 678 238 61 0 chr4 155350513 155350660 -46977687 - MER63A DNA MER1_type -1 209 54 213 241 17 17 chr4 155351118 155351176 -46977171 - MIR SINE MIR -23 239 182 638 212 98 0 chr4 155351656 155351849 -46976498 + MIR SINE MIR 51 262 0 570 274 87 59 chr4 155352128 155352442 -46975905 - L1ME LINE L1 -474 5688 5366 5697 157 57 5 chr4 155352543 155353504 -46974843 - L1M1 LINE L1 -6535 1030 20 221 239 0 0 chr4 155354152 155354198 -46974149 + CT-rich Low_complexity Low_complexity 1 46 0 1754 192 7 3 chr4 155354386 155354693 -46973654 - AluJo SINE Alu -4 308 1 193 324 42 0 chr4 155354817 155354888 -46973459 + L3b LINE CR1 1185 1258 -325 380 319 38 29 chr4 155356249 155356428 -46971919 - MIR SINE MIR -65 143 10 255 79 0 0 chr4 155356568 155356606 -46971741 + (CAT)n Simple_repeat Simple_repeat 1 38 0 433 181 200 25 chr4 155356911 155357071 -46971276 - MER112 DNA MER1_type -6 254 67 201 39 0 0 chr4 155357563 155357589 -46970758 + (CA)n Simple_repeat Simple_repeat 1 26 0 195 297 54 0 chr4 155357650 155357724 -46970623 - MIR SINE MIR -24 238 161 639 240 123 17 chr4 155359858 155360037 -46968310 + MIR SINE MIR 19 216 -46 256 127 36 0 chr4 155360926 155360981 -46967366 + (TG)n Simple_repeat Simple_repeat 1 57 0 239 269 0 11 chr4 155361286 155361379 -46966968 + (TA)n Simple_repeat Simple_repeat 1 92 0 1873 146 25 0 chr4 155361379 155361660 -46966687 - AluSq SINE Alu -25 288 1 21 0 0 0 chr4 155361688 155361709 -46966638 + AT_rich Low_complexity Low_complexity 1 21 0 334 268 122 12 chr4 155361935 155362099 -46966248 - MIR3 SINE MIR -23 185 4 2285 249 98 16 chr4 155362154 155362952 -46965395 + L1PB1 LINE L1 22 884 -5979 * 7800 169 5 1 chr4 155362948 155364948 -46963399 + L1PB1 LINE L1 4504 6512 -355 247 204 11 43 chr4 155364936 155365029 -46963318 - L1MC4 LINE L1 -1339 6703 6614 * 567 104 33 49 chr4 155365068 155365251 -46963096 + (TA)n Simple_repeat Simple_repeat 1 180 0 249 102 0 68 chr4 155365277 155365365 -46962982 + (TA)n Simple_repeat Simple_repeat 1 82 0 2186 136 13 31 chr4 155365366 155365755 -46962592 + L1PB1 LINE L1 6485 6866 -1 245 286 122 51 chr4 155366001 155366197 -46962150 + L1ME LINE L1 5512 5721 -400 240 197 167 0 chr4 155366512 155366578 -46961769 + MIR3 SINE MIR 111 187 -21 341 42 0 21 chr4 155367073 155367121 -46961226 + (TTCC)n Simple_repeat Simple_repeat 1 47 0 2187 132 0 0 chr4 155367121 155367417 -46960930 - AluSq SINE Alu -17 296 1 22 0 0 0 chr4 155367631 155367653 -46960694 + AT_rich Low_complexity Low_complexity 1 22 0 1335 255 72 29 chr4 155368690 155369724 -46958623 - Charlie7 DNA MER1_type 0 2612 5 490 259 89 95 chr4 155370910 155371142 -46957205 + MLT1J LTR MaLR 6 235 -276 180 0 0 0 chr4 155371142 155371162 -46957185 + (TTC)n Simple_repeat Simple_repeat 2 21 0 490 259 89 95 chr4 155371162 155371380 -46956967 + MLT1J LTR MaLR 235 453 -58 180 152 0 0 chr4 155371398 155371431 -46956916 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 37252 84 5 12 chr4 155371676 155377837 -46950510 - L1PA6 LINE L1 -10 6144 11 2317 210 36 26 chr4 155377955 155378455 -46949892 - MLT1D LTR MaLR 0 505 1 893 168 0 0 chr4 155378538 155378675 -46949672 + FAM SINE Alu 30 166 -19 2159 118 30 0 chr4 155378933 155379237 -46949110 + AluSq SINE Alu 1 313 0 311 241 146 44 chr4 155379384 155379542 -46948805 + MLT1K LTR MaLR 2 175 -413 1896 152 3 25 chr4 155379736 155380052 -46948295 + AluJb SINE Alu 1 309 -3 200 209 60 30 chr4 155380247 155380314 -46948033 + MIR SINE MIR 30 98 -164 254 281 0 0 chr4 155381440 155381504 -46946843 + (TG)n Simple_repeat Simple_repeat 1 64 0 644 237 54 40 chr4 155381968 155382192 -46946155 - LTR16C LTR ERVL -2 489 263 573 321 70 57 chr4 155382551 155383290 -46945057 - HERV16 LTR ERVL -379 5385 4637 734 324 62 46 chr4 155383335 155383705 -46944642 - HERV16 LTR ERVL -1964 3032 2657 952 255 41 17 chr4 155383894 155384213 -46944134 - MLT1G1 LTR MaLR -305 285 1 539 346 52 49 chr4 155384237 155384968 -46943379 - HERV16 LTR ERVL -4186 810 78 695 314 71 4 chr4 155385015 155385295 -46943052 - LTR16C LTR ERVL 0 491 193 779 290 34 51 chr4 155385533 155385885 -46942462 + HAL1 LINE L1 2 347 -2160 2102 287 63 33 chr4 155385925 155386846 -46941501 + HAL1 LINE L1 426 1374 -1133 4889 254 105 71 chr4 155386846 155387129 -46941218 + L2 LINE L2 632 904 -2409 240 59 0 0 chr4 155387129 155387163 -46941184 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4889 254 105 71 chr4 155387163 155389170 -46939177 + L2 LINE L2 904 3008 -305 2067 314 129 25 chr4 155389198 155389792 -46938555 + HAL1 LINE L1 1532 2249 -258 2496 127 5 19 chr4 155389792 155390163 -46938184 - MER47A DNA MER2_type 0 366 1 2067 314 129 25 chr4 155390163 155390452 -46937895 + HAL1 LINE L1 2249 2507 0 217 128 43 0 chr4 155390634 155390681 -46937666 + CT-rich Low_complexity Low_complexity 3 51 0 1423 213 40 10 chr4 155390684 155391026 -46937321 - AluJo SINE Alu 0 312 117 432 0 0 0 chr4 155391026 155391074 -46937273 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1423 213 40 10 chr4 155391074 155391195 -46937152 - AluJo SINE Alu -195 117 1 192 263 0 35 chr4 155391675 155391732 -46936615 - L2 LINE L2 -11 3261 3207 1092 154 6 0 chr4 155391974 155392143 -46936204 + FRAM SINE Alu 1 170 -6 658 236 96 24 chr4 155392194 155392402 -46935945 - Charlie8 DNA MER1_type -2160 257 35 1214 256 107 19 chr4 155393031 155393466 -46934881 + LTR16B LTR ERVL 6 458 -6 524 298 29 6 chr4 155393466 155393637 -46934710 + HERV16 LTR ERVL 4 178 -4818 3380 210 60 23 chr4 155393736 155394619 -46933728 + L1ME1 LINE L1 5270 6161 -5 1694 296 62 20 chr4 155394626 155395340 -46933007 + HERV16 LTR ERVL 348 1091 -3905 1288 328 58 52 chr4 155395356 155396464 -46931883 + MERVL LTR ERVL 4015 4693 -303 2813 10 3 6 chr4 155396979 155397293 -46931054 - AluYb8 SINE Alu -5 313 1 953 171 0 0 chr4 155397630 155397776 -46930571 - FRAM SINE Alu -32 144 1 196 241 127 0 chr4 155398294 155398373 -46929974 + L2 LINE L2 3200 3288 -25 2310 97 3 0 chr4 155398785 155399095 -46929252 - AluY SINE Alu 0 311 1 978 214 83 0 chr4 155399275 155399504 -46928843 - MIR SINE MIR -6 256 9 3857 168 6 0 chr4 155399530 155400204 -46928143 - L1 LINE L1 -1148 4998 4321 773 209 0 8 chr4 155400204 155400338 -46928009 - AluJb SINE Alu -12 300 168 1573 103 84 26 chr4 155400338 155400611 -46927736 + L1MA7 LINE L1 5997 6285 -6 209 256 0 89 chr4 155401281 155401371 -46926976 - MIR SINE MIR -16 246 165 * 393 342 124 20 chr4 155401368 155401722 -46926625 + L3 LINE CR1 412 802 -775 326 325 6 60 chr4 155402239 155402405 -46925942 + MIR SINE MIR 33 189 -73 454 269 108 18 chr4 155402487 155402654 -46925693 - L3 LINE CR1 -280 1297 1116 702 326 99 25 chr4 155402828 155402983 -46925364 - L3 LINE CR1 -476 1101 959 180 0 0 0 chr4 155402983 155403003 -46925344 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 702 326 99 25 chr4 155403003 155403409 -46924938 - L3 LINE CR1 -618 959 460 250 157 21 0 chr4 155403540 155403592 -46924755 - MLT2B1 LTR ERVL -8 512 404 4518 181 18 1 chr4 155403615 155404335 -46924012 + MER44D DNA MER2_type 2 605 0 183 225 0 0 chr4 155404338 155404409 -46923938 + GA-rich Low_complexity Low_complexity 2 72 0 15959 121 23 7 chr4 155404428 155406775 -46921572 + Tigger1 DNA MER2_type 34 2418 0 2137 197 98 7 chr4 155406775 155407210 -46921137 - MLT2B1 LTR ERVL -45 475 1 850 97 0 0 chr4 155407221 155407335 -46921012 + L1PA13 LINE L1 6022 6135 -28 2120 123 3 3 chr4 155407535 155407835 -46920512 + AluSq SINE Alu 1 300 -13 253 282 176 60 chr4 155408692 155408908 -46919439 - L2 LINE L2 -10 3262 3022 23 33 0 0 chr4 155409781 155409811 -46918536 + AT_rich Low_complexity Low_complexity 1 30 0 282 328 23 47 chr4 155412833 155412961 -46915386 + MIR SINE MIR 22 146 -116 445 226 132 19 chr4 155413046 155413205 -46915142 - MIR SINE MIR -71 191 15 1245 128 0 0 chr4 155414815 155414979 -46913368 + AluSg/x SINE Alu 124 287 -25 180 286 0 0 chr4 155415997 155416046 -46912301 - MIR SINE MIR -122 140 92 329 193 273 17 chr4 155416452 155416628 -46911719 + LTR50 LTR ERVL 3 223 -572 522 208 172 0 chr4 155416660 155416935 -46911412 + LTR50 LTR ERVL 364 518 -5 543 308 94 82 chr4 155418093 155418781 -46909566 + L2 LINE L2 2548 3271 -1 252 0 0 0 chr4 155419833 155419861 -46908486 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 242 333 21 11 chr4 155419865 155419958 -46908389 - L2 LINE L2 -15 3257 3164 603 272 39 30 chr4 155420468 155420683 -46907664 - MIR SINE MIR -27 235 25 321 89 0 0 chr4 155421796 155421841 -46906506 + (CA)n Simple_repeat Simple_repeat 2 46 0 332 202 48 97 chr4 155422104 155422228 -46906119 + MIR SINE MIR 1 118 -144 28 29 0 0 chr4 155422262 155422297 -46906050 + AT_rich Low_complexity Low_complexity 1 35 0 332 179 192 13 chr4 155422318 155422396 -46905951 - L2 LINE L2 -29 3284 3193 857 249 45 16 chr4 155423943 155424188 -46904159 - MIR SINE MIR -5 257 6 589 199 58 35 chr4 155425852 155426023 -46902324 - MER5B DNA MER1_type 0 178 4 591 290 65 37 chr4 155426048 155426265 -46902082 + MIR SINE MIR 28 250 -12 2059 235 142 40 chr4 155426426 155427532 -46900815 + L2 LINE L2 2094 3313 0 23 0 0 0 chr4 155428182 155428205 -46900142 + AT_rich Low_complexity Low_complexity 1 23 0 612 299 83 37 chr4 155428727 155428978 -46899369 + MIR SINE MIR 3 260 -2 189 171 0 0 chr4 155428980 155429015 -46899332 + (TTA)n Simple_repeat Simple_repeat 3 37 0 2267 106 0 0 chr4 155429574 155429877 -46898470 - AluSx SINE Alu -9 303 1 191 374 70 64 chr4 155430436 155430623 -46897724 - MER5A DNA MER1_type -1 188 1 278 250 47 0 chr4 155430682 155430746 -46897601 - MIR3 SINE MIR -1 207 141 257 219 201 10 chr4 155430809 155430919 -46897428 + MIR SINE MIR 1 135 -73 185 258 48 32 chr4 155431805 155431867 -46896480 + MIR SINE MIR 200 262 0 1859 149 7 14 chr4 155432041 155432336 -46896011 + AluJo SINE Alu 1 293 -19 259 299 30 0 chr4 155432421 155432488 -46895859 - MER112 DNA MER1_type -1 259 191 25 51 0 0 chr4 155433194 155433233 -46895114 + AT_rich Low_complexity Low_complexity 1 39 0 472 308 92 0 chr4 155434072 155434251 -46894096 - MIR3 SINE MIR -1 207 10 692 160 8 8 chr4 155435779 155435904 -46892443 + L1MC1 LINE L1 6208 6332 -1 234 269 355 28 chr4 155436201 155436342 -46892005 - MIR3 SINE MIR -2 206 20 228 54 0 0 chr4 155436743 155436780 -46891567 + L1PA8 LINE L1 6136 6172 0 600 321 36 0 chr4 155437300 155437468 -46890879 - MIR SINE MIR -12 250 77 762 252 117 4 chr4 155439101 155439331 -46889016 - MIR SINE MIR -6 256 1 289 335 168 6 chr4 155439645 155439812 -46888535 - L3b LINE CR1 -97 1486 1293 184 300 0 0 chr4 155440355 155440395 -46887952 - L2 LINE L2 -229 3043 3004 420 269 47 34 chr4 155443703 155443852 -46884495 - MIR SINE MIR -40 222 72 324 179 39 13 chr4 155444360 155444438 -46883909 - MIR3 SINE MIR -6 202 123 724 54 0 0 chr4 155445079 155445172 -46883175 - AluSg/x SINE Alu -4 306 214 1692 175 4 4 chr4 155445499 155445773 -46882574 + AluJo SINE Alu 9 282 -30 243 79 0 0 chr4 155445774 155445812 -46882535 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 510 390 38 20 chr4 155447340 155447786 -46880561 - L2 LINE L2 -849 2465 2012 3586 226 25 13 chr4 155450281 155451617 -46876730 + L1M1 LINE L1 3225 4580 -2985 1527 183 45 12 chr4 155451858 155452192 -46876155 + L1MA10 LINE L1 5986 6330 -4 2224 108 0 0 chr4 155452405 155452702 -46875645 - AluSx SINE Alu -15 297 1 878 128 15 0 chr4 155454633 155454766 -46873581 + AluJo SINE Alu 1 135 -177 353 288 125 38 chr4 155454803 155454886 -46873461 + L1ME1 LINE L1 5258 5332 -2476 360 0 0 0 chr4 155454886 155454926 -46873421 + (CA)n Simple_repeat Simple_repeat 1 40 0 353 288 125 38 chr4 155454926 155455083 -46873264 + L1ME1 LINE L1 5332 5534 -2274 1347 183 66 17 chr4 155455083 155455372 -46872975 + AluJo SINE Alu 1 303 -9 353 288 125 38 chr4 155455372 155455443 -46872904 + L1ME1 LINE L1 5534 5597 -2211 380 297 102 57 chr4 155455467 155455713 -46872634 - MIR SINE MIR 0 262 6 436 306 81 30 chr4 155455834 155456131 -46872216 + L1MEd LINE L1 263 574 -5545 735 262 101 4 chr4 155456291 155456528 -46871819 - MIR SINE MIR -2 260 1 328 241 68 111 chr4 155456530 155456737 -46871610 + HAL1 LINE L1 1427 1624 -883 376 298 51 70 chr4 155457254 155457469 -46870878 + MLT1L LTR MaLR 208 418 -197 1250 168 5 14 chr4 155457472 155457686 -46870661 + AluSx SINE Alu 1 212 -100 264 30 0 0 chr4 155457710 155457743 -46870604 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 258 242 81 0 chr4 155457745 155457807 -46870540 + MLT1L LTR MaLR 413 479 -136 1328 176 18 21 chr4 155458548 155458839 -46869508 + L1ME1 LINE L1 5879 6158 -8 329 329 38 67 chr4 155459258 155459478 -46868869 - MIR SINE MIR -50 212 2 379 237 178 35 chr4 155459687 155459856 -46868491 - MIR SINE MIR -25 237 45 1967 124 17 21 chr4 155460050 155460341 -46868006 - AluSx SINE Alu -22 290 1 21 0 0 0 chr4 155460599 155460620 -46867727 + AT_rich Low_complexity Low_complexity 1 21 0 511 309 80 5 chr4 155462008 155462209 -46866138 + L2 LINE L2 3098 3313 0 2092 130 3 0 chr4 155463649 155463942 -46864405 + AluSx SINE Alu 2 295 -17 346 346 0 0 chr4 155464484 155464591 -46863756 + MIR SINE MIR 48 154 -108 251 260 84 78 chr4 155464584 155464738 -46863609 - MIR SINE MIR 0 262 108 * 186 340 0 0 chr4 155465263 155465310 -46863037 + L2 LINE L2 3202 3248 -24 27 29 0 0 chr4 155465568 155465602 -46862745 + AT_rich Low_complexity Low_complexity 1 34 0 19718 37 0 0 chr4 155465953 155469142 -46859205 + L1PA2 LINE L1 2966 6154 -1 222 37 0 0 chr4 155469142 155469169 -46859178 + (TA)n Simple_repeat Simple_repeat 1 27 0 214 302 123 0 chr4 155469489 155469595 -46858752 + L2 LINE L2 1939 2057 -1257 373 271 107 0 chr4 155469795 155469917 -46858430 + L2 LINE L2 3138 3272 0 202 311 34 59 chr4 155469875 155469994 -46858353 - MIR SINE MIR -143 119 4 * 225 288 0 15 chr4 155470226 155470292 -46858055 + (TATATG)n Simple_repeat Simple_repeat 3 67 0 2645 235 35 36 chr4 155471529 155472504 -46855843 - L1ME3 LINE L1 -70 6092 5125 576 318 51 16 chr4 155473154 155473409 -46854938 + L2 LINE L2 2440 2703 -611 1344 199 57 15 chr4 155473522 155473698 -46854649 - AluJo SINE Alu -4 308 116 237 33 0 0 chr4 155473698 155473728 -46854619 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1344 199 57 15 chr4 155473728 155473813 -46854534 - AluJo SINE Alu -196 116 36 23 54 0 0 chr4 155473987 155474024 -46854323 + AT_rich Low_complexity Low_complexity 1 37 0 1296 200 77 19 chr4 155474701 155475026 -46853321 + MER2 DNA MER2_type 1 344 0 433 277 64 32 chr4 155476490 155476678 -46851669 - MIR SINE MIR -19 243 50 517 254 172 19 chr4 155476695 155476904 -46851443 + MIR SINE MIR 6 246 -16 201 196 22 22 chr4 155477492 155477538 -46850809 - MIR SINE MIR -56 152 107 696 256 183 36 chr4 155477973 155478333 -46850014 - L2 LINE L2 -73 3240 2828 323 354 175 18 chr4 155478335 155478615 -46849732 - L2 LINE L2 -1972 1342 1019 843 254 111 16 chr4 155478615 155478922 -46849425 - L2 LINE L2 -2144 1170 835 558 239 51 68 chr4 155478938 155479114 -46849233 - MER91B DNA MER1_type -12 178 6 318 315 95 47 chr4 155479944 155480481 -46847866 - L2 LINE L2 -374 2940 2378 355 364 79 0 chr4 155480987 155481127 -46847220 - L2 LINE L2 0 3272 3122 1334 238 84 39 chr4 155481566 155481982 -46846365 + LTR16A LTR ERVL 16 450 0 944 118 0 28 chr4 155482012 155482156 -46846191 - AluSg/x SINE Alu 0 312 173 999 104 0 0 chr4 155482256 155482400 -46845947 - L1P4 LINE L1 -624 5542 5399 361 204 0 78 chr4 155482416 155482519 -46845828 - L1MC4 LINE L1 -11 8031 7937 293 401 68 39 chr4 155482705 155483012 -46845335 + L2 LINE L2 2937 3252 -20 561 195 25 17 chr4 155483129 155483247 -46845100 + MLT1A2 LTR MaLR 42 160 -205 7331 185 34 10 chr4 155483252 155484539 -46843808 + L1PB4 LINE L1 3711 5044 -1102 2161 108 7 3 chr4 155484539 155484846 -46843501 + AluY SINE Alu 1 308 -3 7331 185 34 10 chr4 155484846 155485102 -46843245 + L1PB4 LINE L1 5044 5292 -854 1693 149 49 0 chr4 155485102 155485387 -46842960 + L1PB4 LINE L1 5855 6156 0 697 226 31 53 chr4 155485395 155485621 -46842726 + MLT1A2 LTR MaLR 154 374 0 536 246 74 53 chr4 155485784 155486028 -46842319 + MIR SINE MIR 3 256 -6 1819 170 0 22 chr4 155486409 155486727 -46841620 + AluJb SINE Alu 1 311 -1 195 220 0 0 chr4 155488487 155488537 -46839810 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 653 324 58 23 chr4 155488783 155489120 -46839227 + L2 LINE L2 2670 3030 -283 822 169 0 0 chr4 155489147 155489283 -46839064 + AluJb SINE Alu 176 311 -1 688 272 48 32 chr4 155489292 155489542 -46838805 - MIR SINE MIR -16 246 2 243 278 113 60 chr4 155489551 155489684 -46838663 + L2 LINE L2 3174 3313 0 1825 143 4 11 chr4 155490445 155490724 -46837623 - AluSx SINE Alu -35 277 1 1380 188 0 65 chr4 155491149 155491473 -46836874 + AluJo SINE Alu 1 303 -9 200 211 0 0 chr4 155494346 155494384 -46833963 + (CATA)n Simple_repeat Simple_repeat 3 40 0 2147 305 78 52 chr4 155494923 155496476 -46831871 - L2 LINE L2 -1 3312 1730 209 256 0 0 chr4 155496605 155496648 -46831699 - L2 LINE L2 -15 3257 3215 182 197 105 40 chr4 155497695 155497771 -46830576 - MIR SINE MIR -129 133 53 253 94 0 0 chr4 155498100 155498132 -46830215 - L1MC4 LINE L1 -158 7884 7853 * 1197 211 70 3 chr4 155498130 155498414 -46829933 - L1MC4 LINE L1 -1235 6807 6505 240 337 22 0 chr4 155498530 155498622 -46829725 - MIR SINE MIR -138 124 31 406 351 118 45 chr4 155498701 155499014 -46829333 + L2 LINE L2 2928 3263 -9 7182 180 75 15 chr4 155499179 155502218 -46826129 + L1M1 LINE L1 1811 5037 -2528 2083 182 31 22 chr4 155502221 155502676 -46825671 + L1MA4 LINE L1 5835 6293 -7 262 274 60 43 chr4 155503479 155503571 -46824776 + MIR SINE MIR 33 129 -133 2083 131 6 46 chr4 155503571 155503922 -46824425 + MER1B DNA MER1_type 1 337 0 262 274 60 43 chr4 155503922 155503946 -46824401 + MIR SINE MIR 129 151 -111 857 221 113 0 chr4 155503946 155504168 -46824179 - MER46C DNA MER2_type 0 338 92 194 308 0 0 chr4 155504253 155504305 -46824042 + MIR SINE MIR 159 210 -52 225 83 0 0 chr4 155504744 155504780 -46823567 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 1033 164 19 42 chr4 155505040 155505254 -46823093 + MER3 DNA MER1_type 1 209 0 1031 231 21 16 chr4 155506902 155507144 -46821203 + MIR SINE MIR 20 262 0 22 0 0 0 chr4 155508460 155508482 -46819865 + AT_rich Low_complexity Low_complexity 1 22 0 195 333 95 19 chr4 155508761 155508866 -46819481 - L2 LINE L2 -4 3309 3197 180 328 90 37 chr4 155508931 155509065 -46819282 + MIR SINE MIR 31 171 -91 449 311 89 27 chr4 155509327 155509552 -46818795 + MIR SINE MIR 3 241 -21 280 273 48 109 chr4 155509804 155509922 -46818425 + MER5A DNA MER1_type 35 142 -47 1868 185 0 0 chr4 155509922 155510224 -46818123 + AluJb SINE Alu 1 302 -10 280 273 48 109 chr4 155510224 155510270 -46818077 + MER5A DNA MER1_type 142 189 0 1883 167 0 3 chr4 155510941 155511240 -46817107 + AluJo SINE Alu 1 298 -14 570 250 28 50 chr4 155511409 155511589 -46816758 - MER5B DNA MER1_type -2 176 1 247 328 35 70 chr4 155511618 155511847 -46816500 - L2 LINE L2 -706 2608 2388 * 585 299 120 0 chr4 155511841 155512025 -46816322 + MIR SINE MIR 47 252 -10 2055 135 7 0 chr4 155512057 155512345 -46816002 + AluSx SINE Alu 1 290 -22 420 20 0 0 chr4 155512345 155512364 -46815983 + (CA)n Simple_repeat Simple_repeat 1 68 0 420 20 0 0 chr4 155512364 155512413 -46815934 + (CA)n Simple_repeat Simple_repeat 2 50 0 2261 121 0 0 chr4 155512679 155512986 -46815361 + AluSx SINE Alu 6 312 0 385 287 80 0 chr4 155513115 155513265 -46815082 + L2 LINE L2 2934 3095 -218 2447 193 51 10 chr4 155513454 155513941 -46814406 - MER21B LTR ERV1 -30 833 327 432 262 39 0 chr4 155513923 155514026 -46814321 - MER21B LTR ERV1 -712 151 45 * 1859 170 196 72 chr4 155514035 155514399 -46813948 + LTR1B LTR ERV1 1 319 -466 4565 71 3 2 chr4 155514399 155514989 -46813358 - LTR10C LTR ERV1 0 591 1 1859 170 196 72 chr4 155514989 155515324 -46813023 + LTR1B LTR ERV1 319 785 0 283 172 62 16 chr4 155515380 155515444 -46812903 - MER21B LTR ERV1 -757 106 40 302 296 49 0 chr4 155515583 155515664 -46812683 + L2 LINE L2 3224 3308 -5 225 0 0 0 chr4 155517747 155517772 -46810575 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 282 56 0 0 chr4 155517771 155517807 -46810540 + (TG)n Simple_repeat Simple_repeat 1 36 0 190 329 0 53 chr4 155518367 155518443 -46809904 - L2 LINE L2 -8 3305 3234 868 161 93 6 chr4 155518851 155519013 -46809334 - MER69A DNA AcHobo -1 176 1 302 268 22 87 chr4 155520194 155520332 -46808015 + L2 LINE L2 3176 3304 -9 182 351 106 0 chr4 155520992 155521086 -46807261 - MIR SINE MIR 0 262 159 465 130 141 22 chr4 155521086 155521178 -46807169 + MER51A LTR ERV1 1 103 -531 * 1650 144 19 7 chr4 155521177 155521447 -46806900 + MER51B LTR ERV1 53 325 -52 319 207 270 9 chr4 155521566 155521677 -46806670 - MIR SINE MIR -101 161 22 258 269 13 13 chr4 155521703 155521781 -46806566 - MIR SINE MIR 0 262 185 516 313 7 21 chr4 155521783 155521943 -46806404 + MIR3 SINE MIR 15 173 -35 624 152 10 10 chr4 155522570 155522669 -46805678 + MSTB LTR MaLR 1 99 -327 342 48 0 0 chr4 155523181 155523223 -46805124 + MADE1 DNA Mariner 1 42 -38 381 270 113 22 chr4 155523253 155523438 -46804909 - L1ME LINE L1 -701 5463 5262 24 0 0 0 chr4 155523453 155523477 -46804870 + AT_rich Low_complexity Low_complexity 1 24 0 2101 144 66 0 chr4 155523485 155523847 -46804500 - L1PA16 LINE L1 -13 6153 5768 1050 130 0 13 chr4 155523947 155524101 -46804246 - AluSq/x SINE Alu -161 152 1 572 318 15 15 chr4 155524199 155524394 -46803953 - MIR SINE MIR -20 242 48 4859 32 0 0 chr4 155524807 155525395 -46802952 - L1P LINE L1 -3130 3016 2429 5322 24 2 0 chr4 155525395 155526010 -46802337 + L1PA3 LINE L1 5535 6155 0 22 0 0 0 chr4 155526169 155526191 -46802156 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 155526607 155526630 -46801717 + AT_rich Low_complexity Low_complexity 1 23 0 240 206 63 0 chr4 155528453 155528516 -46799831 + MIR3 SINE MIR 142 208 0 337 276 31 10 chr4 155529327 155529425 -46798922 - L2 LINE L2 0 3313 3214 251 346 54 105 chr4 155529502 155529785 -46798562 + L2 LINE L2 2958 3223 -49 760 177 30 81 chr4 155529785 155529983 -46798364 - MER5A DNA MER1_type 0 189 2 251 346 54 105 chr4 155529983 155530031 -46798316 + L2 LINE L2 3223 3272 0 182 205 26 0 chr4 155530186 155530225 -46798122 - MIR SINE MIR -10 252 213 5368 108 9 10 chr4 155530242 155531055 -46797292 - L1PA16 LINE L1 -9 6157 5346 781 265 18 18 chr4 155531055 155531278 -46797069 - MIR SINE MIR -37 225 3 211 163 0 47 chr4 155531373 155531416 -46796931 + G-rich Low_complexity Low_complexity 1 41 0 967 150 36 0 chr4 155531418 155531585 -46796762 - MER105 DNA DNA -31 173 1 2583 142 35 7 chr4 155532702 155533160 -46795187 - L1MA9 LINE L1 0 6312 5842 21 0 0 0 chr4 155534030 155534051 -46794296 + AT_rich Low_complexity Low_complexity 1 21 0 257 342 63 9 chr4 155534484 155534595 -46793752 + MIR SINE MIR 35 151 -111 219 268 18 0 chr4 155534809 155534865 -46793482 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 210 325 0 75 chr4 155536389 155536469 -46791878 - L2 LINE L2 -52 3220 3147 2000 166 22 8 chr4 155536713 155537069 -46791278 + MLT1A1 LTR MaLR 5 365 0 256 266 32 12 chr4 155537379 155537463 -46790884 - MIR SINE MIR -46 162 75 672 255 27 11 chr4 155537711 155537895 -46790452 - L2 LINE L2 -7 3306 3120 2394 221 25 29 chr4 155537897 155538412 -46789935 + MLT2B3 LTR ERVL 1 513 -41 4399 271 71 16 chr4 155538421 155540086 -46788261 + L2 LINE L2 1554 3313 0 3458 271 136 25 chr4 155540083 155541438 -46786909 - L2 LINE L2 -1511 1803 299 * 1708 244 49 5 chr4 155541536 155541983 -46786364 - MLT1C LTR MaLR 0 467 1 781 163 0 0 chr4 155542036 155542159 -46786188 - FLAM_C SINE Alu -10 123 1 7283 40 13 13 chr4 155542642 155544149 -46784198 - L1PA5 LINE L1 -1 6153 4650 5422 30 0 0 chr4 155544149 155544791 -46783556 + L1P LINE L1 4044 4685 -1461 287 284 128 68 chr4 155545897 155546045 -46782302 - MIR3 SINE MIR -60 148 11 462 18 0 0 chr4 155547328 155547336 -46781011 + (CA)n Simple_repeat Simple_repeat 1 63 0 462 18 0 0 chr4 155547336 155547391 -46780956 + (CA)n Simple_repeat Simple_repeat 2 56 0 269 367 47 23 chr4 155548008 155548136 -46780211 - L2 LINE L2 -15 3257 3127 2405 253 110 72 chr4 155548159 155549460 -46778887 + L1M2 LINE L1 874 2174 -5035 574 280 142 18 chr4 155549789 155550007 -46778340 - MIR SINE MIR 0 262 18 274 286 26 0 chr4 155550858 155550935 -46777412 - L3 LINE CR1 -1 1576 1498 362 238 164 0 chr4 155551077 155551199 -46777148 - MIR SINE MIR 0 262 121 218 324 144 0 chr4 155551291 155551402 -46776945 - L3 LINE CR1 -193 1384 1258 222 246 46 0 chr4 155551508 155551573 -46776774 - L3 LINE CR1 -356 1221 1154 1631 197 56 61 chr4 155551637 155552099 -46776248 + LTR37B LTR ERV1 9 468 0 2632 122 36 10 chr4 155552752 155553169 -46775178 + MSTA LTR MaLR 1 428 0 311 265 103 22 chr4 155553714 155553850 -46774497 - L2 LINE L2 -7 3306 3160 506 317 113 69 chr4 155553977 155554706 -46773641 - L2 LINE L2 -337 2977 2217 279 328 81 68 chr4 155554721 155555328 -46773019 - L2 LINE L2 -1347 1967 1353 481 174 22 0 chr4 155555387 155555479 -46772868 - LTR40a LTR ERVL -11 508 415 * 1024 140 22 17 chr4 155555475 155555565 -46772782 - Tigger7 DNA MER2_type -405 2082 1994 216 0 0 0 chr4 155555565 155555589 -46772758 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1024 140 22 17 chr4 155555589 155555676 -46772671 - Tigger7 DNA MER2_type -493 1994 1904 243 0 0 0 chr4 155555676 155555703 -46772644 + (A)n Simple_repeat Simple_repeat 1 27 0 1097 205 19 8 chr4 155555704 155556010 -46772337 - LTR40b LTR ERVL -93 369 1 249 356 92 49 chr4 155556160 155556323 -46772024 - L3 LINE CR1 -978 599 430 411 322 154 7 chr4 155556336 155556485 -46771862 + MER5A DNA MER1_type 13 183 -6 708 197 51 0 chr4 155556505 155556642 -46771705 - MER58B DNA MER1_type 0 341 198 418 356 62 40 chr4 155556731 155557054 -46771293 - L3 LINE CR1 -1206 371 42 393 345 77 53 chr4 155557477 155557776 -46770571 - L3 LINE CR1 -1230 347 42 405 231 109 27 chr4 155558721 155558868 -46769479 - MIR SINE MIR 0 262 104 30 27 0 0 chr4 155559020 155559057 -46769290 + AT_rich Low_complexity Low_complexity 1 37 0 273 225 67 56 chr4 155559185 155559274 -46769073 + L2 LINE L2 3223 3312 -1 988 232 28 28 chr4 155559404 155559654 -46768693 - MIR SINE MIR -11 251 2 343 326 75 21 chr4 155559681 155559868 -46768479 - MIR3 SINE MIR -9 199 3 198 0 0 0 chr4 155559959 155559981 -46768366 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1561 65 10 0 chr4 155560954 155561154 -46767193 - L1PA8 LINE L1 0 6172 5971 22 35 0 0 chr4 155561241 155561270 -46767077 + AT_rich Low_complexity Low_complexity 1 29 0 279 173 0 0 chr4 155561627 155561679 -46766668 + (TA)n Simple_repeat Simple_repeat 2 53 0 243 0 0 0 chr4 155561680 155561707 -46766640 + (GA)n Simple_repeat Simple_repeat 1 27 0 440 244 78 17 chr4 155562749 155562864 -46765483 - L2 LINE L2 0 3313 3192 257 241 0 62 chr4 155563255 155563367 -46764980 - L1MC4a LINE L1 -1890 5918 5814 21 0 0 0 chr4 155563887 155563908 -46764439 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr4 155564008 155564042 -46764305 + AT_rich Low_complexity Low_complexity 1 34 0 260 264 0 0 chr4 155564505 155564558 -46763789 - Charlie8 DNA MER1_type -2363 54 2 310 291 172 13 chr4 155565027 155565178 -46763169 + MARNA DNA Mariner 43 217 -369 1959 203 114 0 chr4 155565671 155566135 -46762212 + Charlie1b DNA MER1_type 2 518 -5 310 327 85 12 chr4 155566505 155566670 -46761677 + L2 LINE L2 2738 2914 -400 568 280 42 51 chr4 155566738 155566974 -46761373 + L2 LINE L2 3080 3313 0 696 266 124 0 chr4 155566979 155567212 -46761135 - MIR SINE MIR 0 262 1 379 332 93 68 chr4 155568007 155568405 -46759942 - L2 LINE L2 -5 3267 2860 24 32 0 0 chr4 155569071 155569102 -46759245 + AT_rich Low_complexity Low_complexity 1 31 0 5143 118 39 7 chr4 155570347 155571153 -46757194 + L1PA16 LINE L1 5336 6166 0 29433 43 35 3 chr4 155571163 155574887 -46753460 + L1P LINE L1 1 3844 -2302 1792 164 10 13 chr4 155625006 155625305 -46703042 - AluJb SINE Alu -14 298 1 2212 96 7 3 chr4 155625315 155625606 -46702741 - AluSq SINE Alu -21 292 1 1769 163 31 23 chr4 155625698 155626048 -46702299 - MLT1B LTR MaLR -4 386 34 2328 115 0 0 chr4 155626640 155626944 -46701403 - AluSx SINE Alu -8 304 1 1452 187 12 27 chr4 155627762 155628019 -46700328 + AluJb SINE Alu 49 301 -11 21 0 0 0 chr4 155628096 155628117 -46700230 + AT_rich Low_complexity Low_complexity 1 21 0 414 306 60 49 chr4 155628730 155628913 -46699434 - L2 LINE L2 0 3272 3088 892 266 65 9 chr4 155629116 155629330 -46699017 + MIR SINE MIR 16 241 -21 24 0 0 0 chr4 155630262 155630286 -46698061 + AT_rich Low_complexity Low_complexity 1 24 0 387 234 45 36 chr4 155631302 155631413 -46696934 + L1ME1 LINE L1 4009 4120 -2026 333 237 48 59 chr4 155631641 155631827 -46696520 + MER95 LTR ERV 246 429 -2 3599 210 74 35 chr4 155631832 155633783 -46694564 + L1ME1 LINE L1 4123 6151 -15 22 0 0 0 chr4 155633906 155633928 -46694419 + AT_rich Low_complexity Low_complexity 1 22 0 275 303 161 12 chr4 155634209 155634371 -46693976 + MIR SINE MIR 23 208 -54 26 101 0 0 chr4 155635020 155635109 -46693238 + AT_rich Low_complexity Low_complexity 1 89 0 361 282 68 49 chr4 155635321 155635484 -46692863 - MIR3 SINE MIR -28 180 15 22 0 0 0 chr4 155636149 155636171 -46692176 + AT_rich Low_complexity Low_complexity 1 22 0 332 223 54 84 chr4 155636337 155636445 -46691902 + L1ME LINE L1 5555 5658 -463 1766 173 0 0 chr4 155636445 155636728 -46691619 + AluJo SINE Alu 17 299 -13 332 223 54 84 chr4 155636728 155636785 -46691562 + L1ME LINE L1 5658 5715 -406 361 155 0 0 chr4 155636792 155636850 -46691497 - Alu SINE Alu 0 300 243 206 42 0 0 chr4 155636950 155636974 -46691373 + (GGAA)n Simple_repeat Simple_repeat 1 24 0 2480 65 0 10 chr4 155637163 155637472 -46690875 + AluY SINE Alu 1 306 -5 1648 188 6 13 chr4 155637583 155637897 -46690450 - AluJb SINE Alu 0 312 1 243 283 115 26 chr4 155638094 155638207 -46690140 - MIR3 SINE MIR -46 162 40 535 108 0 0 chr4 155638654 155638728 -46689619 + Alu SINE Alu 224 297 -15 21 0 0 0 chr4 155639053 155639074 -46689273 + AT_rich Low_complexity Low_complexity 1 21 0 200 118 0 29 chr4 155639189 155639223 -46689124 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 278 318 49 76 chr4 155639318 155639541 -46688806 - MIR SINE MIR -24 238 22 222 360 7 43 chr4 155639969 155640108 -46688239 - L2 LINE L2 -1355 1959 1826 225 282 161 24 chr4 155640484 155640608 -46687739 - MIR3 SINE MIR -62 146 6 429 81 0 0 chr4 155640994 155641056 -46687291 + (CA)n Simple_repeat Simple_repeat 2 63 0 1606 224 127 12 chr4 155641507 155642103 -46686244 + MER39 LTR ERV1 1 704 -3 2168 110 28 0 chr4 155642835 155643125 -46685222 + AluSx SINE Alu 1 298 -14 207 0 0 0 chr4 155643141 155643164 -46685183 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 413 294 167 15 chr4 155643345 155643549 -46684798 - MIR SINE MIR 0 262 28 2110 146 10 0 chr4 155643736 155644045 -46684302 + AluSx SINE Alu 1 312 0 369 43 0 0 chr4 155644092 155644139 -46684208 + (TG)n Simple_repeat Simple_repeat 2 48 0 486 316 139 8 chr4 155644743 155644951 -46683396 + MIR SINE MIR 18 262 0 206 388 10 0 chr4 155645816 155645914 -46682433 - L3 LINE CR1 -8 1569 1471 22 70 0 0 chr4 155646040 155646083 -46682264 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr4 155647117 155647145 -46681202 + AT_rich Low_complexity Low_complexity 1 28 0 1880 137 4 4 chr4 155648007 155648313 -46680034 + AluSx SINE Alu 15 320 0 219 204 0 0 chr4 155648427 155648471 -46679876 + L2 LINE L2 3168 3211 -61 248 132 0 0 chr4 155648705 155648743 -46679604 - L2 LINE L2 -4 3309 3272 245 261 15 0 chr4 155648803 155648868 -46679479 - L2 LINE L2 -48 3224 3159 1018 208 14 23 chr4 155649063 155649284 -46679063 + MER20 DNA MER1_type 1 219 0 1723 193 113 24 chr4 155649350 155649774 -46678573 + MLT1C LTR MaLR 6 467 0 408 66 91 8 chr4 155649879 155650000 -46678347 + (TA)n Simple_repeat Simple_repeat 2 132 0 183 153 63 18 chr4 155650025 155650136 -46678211 + (TATAA)n Simple_repeat Simple_repeat 4 119 0 194 274 0 39 chr4 155650172 155650223 -46678124 - L2 LINE L2 -50 3263 3215 1079 172 122 107 chr4 155654613 155655013 -46673334 - MLT1D LTR MaLR 0 505 100 834 143 16 66 chr4 155655013 155655195 -46673152 - Tigger7 DNA MER2_type 0 2587 2415 2244 131 38 48 chr4 155655195 155655478 -46672869 - Tigger3(Golem) DNA MER2_type 0 3028 2749 669 217 0 23 chr4 155655478 155655607 -46672740 + FLAM_A SINE Alu 1 126 -7 2244 131 38 48 chr4 155655607 155655719 -46672628 - Tigger3(Golem) DNA MER2_type -279 2749 2637 223 189 14 14 chr4 155656382 155656456 -46671891 + (TA)n Simple_repeat Simple_repeat 1 74 0 365 328 109 11 chr4 155657720 155657903 -46670444 - MIR3 SINE MIR -5 203 3 249 372 76 0 chr4 155659044 155659189 -46669158 - L3b LINE CR1 -6 1577 1422 668 252 19 0 chr4 155659335 155659490 -46668857 + MER63 DNA MER1_type 2 785 -277 553 196 12 12 chr4 155659508 155659676 -46668671 + L1M4 LINE L1 3073 3240 -2906 1975 254 143 25 chr4 155659734 155660383 -46667964 - MER21B LTR ERV1 -125 738 13 1173 178 32 22 chr4 155660407 155660639 -46667708 - MER58B DNA MER1_type -2117 303 82 2001 61 36 7 chr4 155660639 155660919 -46667428 - L1MA2 LINE L1 0 6304 6017 1173 178 32 22 chr4 155660919 155661002 -46667345 - MER58B DNA MER1_type -2338 82 1 1613 262 39 7 chr4 155661011 155661556 -46666791 + L1M4 LINE L1 3260 3821 -2325 2379 89 0 0 chr4 155662061 155662364 -46665983 - AluSx SINE Alu -9 303 1 22 35 0 0 chr4 155663051 155663080 -46665267 + AT_rich Low_complexity Low_complexity 1 29 0 3867 251 63 26 chr4 155664066 155665291 -46663056 + L2 LINE L2 1103 2372 -942 711 247 82 96 chr4 155665293 155665694 -46662653 + MLT1I LTR MaLR 1 408 -1 736 175 147 0 chr4 155665695 155665872 -46662475 + L2 LINE L2 2372 2574 -740 1577 170 35 35 chr4 155665872 155666317 -46662030 + L1ME1 LINE L1 5164 5609 -743 1638 203 67 74 chr4 155666431 155666998 -46661349 + L1ME1 LINE L1 5599 6161 -5 2432 79 0 0 chr4 155668184 155668488 -46659859 + AluY SINE Alu 1 304 -7 2270 158 43 9 chr4 155669064 155669483 -46658864 + Tigger2a DNA MER2_type 1 433 -1 591 229 54 36 chr4 155669744 155669910 -46658437 - MIR SINE MIR -16 246 78 660 134 10 0 chr4 155670119 155670216 -46658131 + AluSg/x SINE Alu 194 291 -19 285 100 0 0 chr4 155670678 155670728 -46657619 + (TTTTTG)n Simple_repeat Simple_repeat 1 50 0 723 139 38 0 chr4 155670881 155671089 -46657258 - L1MA9 LINE L1 -1 6311 6047 2420 84 0 3 chr4 155671226 155671534 -46656813 + AluSc SINE Alu 1 307 -2 1022 328 114 12 chr4 155672420 155673008 -46655339 + L2 LINE L2 2330 2977 -337 259 295 26 0 chr4 155673174 155673252 -46655095 + L2 LINE L2 3234 3313 0 266 333 34 34 chr4 155673307 155673424 -46654923 - MIR SINE MIR -112 150 34 1939 112 10 17 chr4 155674209 155674505 -46653842 - AluSc SINE Alu -15 294 1 410 300 39 0 chr4 155674884 155675014 -46653333 - MIR SINE MIR -10 252 118 22 35 0 0 chr4 155675838 155675867 -46652480 + AT_rich Low_complexity Low_complexity 1 29 0 2254 106 0 0 chr4 155675916 155676217 -46652130 - AluSq SINE Alu -10 303 3 730 269 75 7 chr4 155676221 155676503 -46651844 + L1ME4a LINE L1 5526 5826 -295 235 333 22 22 chr4 155676499 155676589 -46651758 + L1MC4a LINE L1 5494 5583 -538 * 183 200 0 0 chr4 155676592 155676627 -46651720 - L2 LINE L2 0 3272 3238 878 284 41 9 chr4 155676638 155676958 -46651389 + L1MC4a LINE L1 5572 5901 -1907 26 50 0 0 chr4 155677190 155677230 -46651117 + AT_rich Low_complexity Low_complexity 1 40 0 1652 149 7 25 chr4 155679020 155679301 -46649046 - AluJb SINE Alu -36 276 1 362 151 14 0 chr4 155679712 155679785 -46648562 + (TA)n Simple_repeat Simple_repeat 2 75 0 212 265 12 48 chr4 155680224 155680307 -46648040 - MIR SINE MIR 0 262 183 1130 160 0 21 chr4 155680401 155680499 -46647848 - MER46A DNA MER2_type 0 236 143 358 217 225 25 chr4 155680499 155680619 -46647728 + MER46A DNA MER2_type 3 146 -90 363 276 104 22 chr4 155681098 155681232 -46647115 - MIR SINE MIR -111 151 7 21 36 0 0 chr4 155684067 155684095 -46644252 + AT_rich Low_complexity Low_complexity 1 28 0 183 162 0 0 chr4 155685845 155685882 -46642465 + (TG)n Simple_repeat Simple_repeat 2 38 0 1377 154 19 19 chr4 155688852 155689119 -46639228 + L1MB3 LINE L1 5866 6132 -51 839 265 109 24 chr4 155689733 155690156 -46638191 - MLT1J LTR MaLR -41 470 12 703 255 0 19 chr4 155690156 155690364 -46637983 + L1M2a LINE L1 4 207 -6961 4542 242 44 25 chr4 155690444 155690767 -46637580 + L1M2a LINE L1 820 1135 -6032 189 0 0 0 chr4 155690767 155690788 -46637559 + (CTG)n Simple_repeat Simple_repeat 3 23 0 4542 242 44 25 chr4 155690788 155693435 -46634912 + L1M2a LINE L1 1135 3579 -3588 1673 183 7 14 chr4 155693435 155693724 -46634623 + AluJo SINE Alu 1 287 -25 4542 242 44 25 chr4 155693724 155693794 -46634553 + L1M2a LINE L1 3579 3646 -3521 734 228 9 40 chr4 155693807 155694031 -46634316 + L1MA9 LINE L1 5887 6103 -209 206 207 12 73 chr4 155695217 155695299 -46633048 + A-rich Low_complexity Low_complexity 5 81 0 219 293 35 0 chr4 155697002 155697060 -46631287 + MIR SINE MIR 82 141 -67 596 194 0 62 chr4 155697129 155697273 -46631074 + FLAM_C SINE Alu 1 135 -8 2028 118 78 12 chr4 155697412 155697820 -46630527 - Tigger3(Golem) DNA MER2_type -525 2504 2070 362 272 0 0 chr4 155697819 155697900 -46630447 - Tigger3(Golem) DNA MER2_type -2882 147 67 * 1075 140 18 12 chr4 155697901 155698065 -46630282 - FRAM SINE Alu -11 165 1 271 161 290 0 chr4 155698065 155698127 -46630220 - Tigger3(Golem) DNA MER2_type -2948 81 2 939 136 98 38 chr4 155698141 155698325 -46630022 - Tigger7 DNA MER2_type -415 318 124 927 156 5 16 chr4 155698506 155698692 -46629655 + LTR2 LTR ERV1 266 449 0 30353 78 6 8 chr4 155698692 155702893 -46625454 + HERVE LTR ERV1 1 4192 -3621 18893 37 8 0 chr4 155702893 155705984 -46622363 + L1PA4 LINE L1 3048 6154 -1 260 351 80 11 chr4 155706171 155706433 -46621914 - L2 LINE L2 -838 2476 2197 382 267 226 9 chr4 155706691 155706912 -46621435 - L2 LINE L2 0 3313 3045 1163 223 49 37 chr4 155706912 155707262 -46621085 - MLT1A1 LTR MaLR 0 365 12 401 312 7 78 chr4 155707269 155707423 -46620924 - L2 LINE L2 -264 3049 2907 2047 168 53 55 chr4 155707423 155707759 -46620588 - MLT1D LTR MaLR 0 505 169 1886 168 49 55 chr4 155707759 155708229 -46620118 + MLT1C LTR MaLR 1 467 0 2047 168 53 55 chr4 155708229 155708398 -46619949 - MLT1D LTR MaLR -336 169 1 237 287 69 11 chr4 155708475 155708562 -46619785 - L2 LINE L2 -497 2817 2726 315 43 106 0 chr4 155708566 155708613 -46619734 + MADE1 DNA Mariner 28 79 -1 2840 105 11 31 chr4 155708647 155709096 -46619251 - MLT2A2 LTR ERVL -2 451 12 9844 62 12 2 chr4 155709097 155710222 -46618125 - HERVL-A2 LTR ERVL 0 5654 4513 2613 62 3 0 chr4 155710222 155710531 -46617816 - AluY SINE Alu -1 310 1 9844 62 12 2 chr4 155710531 155710703 -46617644 - HERVL-A2 LTR ERVL -1141 4513 4344 586 53 0 0 chr4 155710703 155710779 -46617568 - MLT2A2 LTR ERVL -377 76 1 490 277 147 4 chr4 155710784 155711015 -46617332 - L2 LINE L2 -896 2418 2155 1768 169 33 22 chr4 155711027 155711388 -46616959 - MLT1A1 LTR MaLR 0 365 1 270 378 7 34 chr4 155711568 155711716 -46616631 + L2 LINE L2 2918 3061 -211 17029 177 13 27 chr4 155712073 155713818 -46614529 - L1PA13 LINE L1 -4 7597 5828 225 65 0 0 chr4 155713818 155713849 -46614498 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 17029 177 13 27 chr4 155713849 155717339 -46611008 - L1PA13 LINE L1 -1773 5828 2439 5217 257 54 38 chr4 155717337 155720093 -46608254 - L1PA13 LINE L1 -5013 2568 11 * 706 319 149 8 chr4 155720211 155720600 -46607747 - L2 LINE L2 -916 2398 1955 685 270 265 29 chr4 155720670 155721138 -46607209 + MLT1F1 LTR MaLR 1 592 -1 229 306 14 0 chr4 155721172 155721244 -46607103 - L2 LINE L2 -1510 1804 1732 2285 116 0 3 chr4 155721279 155721589 -46606758 - AluSx SINE Alu -3 309 1 344 276 110 8 chr4 155721841 155721968 -46606379 - MIR SINE MIR -95 167 28 471 301 86 31 chr4 155721972 155722135 -46606212 + MIR SINE MIR 2 173 -89 2074 133 85 48 chr4 155722219 155722259 -46606088 - MSTA LTR MaLR 0 428 391 1748 153 7 14 chr4 155722259 155722553 -46605794 + AluSx SINE Alu 21 312 0 2074 133 85 48 chr4 155722553 155722925 -46605422 - MSTA LTR MaLR -37 391 1 692 259 99 19 chr4 155724689 155724952 -46603395 + MLT1J LTR MaLR 2 285 -226 379 270 32 24 chr4 155724986 155725112 -46603235 + MLT1J LTR MaLR 376 502 -9 42020 39 3 3 chr4 155725262 155731416 -46596931 - L1PA3 LINE L1 0 6155 2 268 206 162 0 chr4 155731929 155731997 -46596350 + MER58A DNA MER1_type 8 86 -21 * 501 73 0 0 chr4 155731993 155732061 -46596286 - THE1C LTR MaLR -307 68 1 228 241 138 0 chr4 155733911 155733969 -46594378 + MIR SINE MIR 150 215 -47 3633 97 35 100 chr4 155736556 155737235 -46591112 + MER41B LTR ERV1 1 635 0 278 288 37 2 chr4 155737250 155737345 -46591002 - MIR SINE MIR -78 130 34 1431 133 16 0 chr4 155737432 155737688 -46590659 + L1MA5 LINE L1 6041 6300 0 1918 154 10 13 chr4 155737803 155738115 -46590232 + AluJb SINE Alu 1 311 -1 370 252 14 0 chr4 155738355 155738398 -46589949 + (TA)n Simple_repeat Simple_repeat 2 43 -99 308 165 25 13 chr4 155738398 155738477 -46589870 + L1MA4 LINE L1 6205 6284 -16 370 252 14 0 chr4 155738477 155738572 -46589775 + (TA)n Simple_repeat Simple_repeat 43 142 0 198 231 33 0 chr4 155738616 155738707 -46589640 + (TA)n Simple_repeat Simple_repeat 1 94 0 266 291 18 55 chr4 155739834 155739944 -46588403 + L2 LINE L2 2986 3091 -181 292 250 75 50 chr4 155740629 155740749 -46587598 - MIR SINE MIR -59 203 81 492 279 16 0 chr4 155741240 155741362 -46586985 + L2 LINE L2 3190 3313 0 2220 174 120 5 chr4 155741406 155741848 -46586499 - MLT2B2 LTR ERVL -2 513 21 220 247 74 37 chr4 155741886 155741967 -46586380 - L2 LINE L2 0 3272 3189 349 287 79 0 chr4 155741984 155742085 -46586262 - L2 LINE L2 -226 3087 2979 243 302 75 0 chr4 155742083 155742189 -46586158 + MIR SINE MIR 149 262 0 * 9184 24 1 0 chr4 155742650 155744504 -46583843 - L1PA4 LINE L1 0 6155 4298 5599 36 1 0 chr4 155744504 155745207 -46583140 + L1PA4 LINE L1 3579 4282 -1864 391 255 152 11 chr4 155745347 155745531 -46582816 - L1ME4a LINE L1 -7 6114 5905 418 361 105 13 chr4 155745641 155745954 -46582393 - L1MC4a LINE L1 -1923 5885 5544 25 31 0 0 chr4 155746553 155746585 -46581762 + AT_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr4 155747921 155747942 -46580405 + (TC)n Simple_repeat Simple_repeat 2 22 0 2270 97 3 13 chr4 155748358 155748668 -46579679 - AluSx SINE Alu -5 307 1 1956 155 60 0 chr4 155750118 155750434 -46577913 - MER1B DNA MER1_type -2 335 1 21 0 0 0 chr4 155751089 155751110 -46577237 + AT_rich Low_complexity Low_complexity 1 21 0 5118 280 122 55 chr4 155751509 155751659 -46576688 - L2 LINE L2 -4 3309 3171 2034 151 0 0 chr4 155751659 155751963 -46576384 + AluJb SINE Alu 1 304 -8 5118 280 122 55 chr4 155751963 155752383 -46575964 - L2 LINE L2 -142 3171 2781 1141 112 6 0 chr4 155752383 155752544 -46575803 + U1 snRNA snRNA 1 162 -3 5118 280 122 55 chr4 155752544 155753574 -46574773 - L2 LINE L2 -532 2781 1822 1845 161 3 13 chr4 155753574 155753879 -46574468 - AluJo SINE Alu -9 303 2 5118 280 122 55 chr4 155753879 155755253 -46573094 - L2 LINE L2 -1491 1822 130 3921 118 9 20 chr4 155755700 155755794 -46572553 + L1MA4 LINE L1 5644 5737 -563 2376 87 0 3 chr4 155755794 155756093 -46572254 + AluY SINE Alu 1 298 -13 3921 118 9 20 chr4 155756093 155756657 -46571690 + L1MA4 LINE L1 5737 6295 -5 1583 126 0 9 chr4 155757505 155757736 -46570611 + MER30 DNA MER1_type 2 230 0 374 250 141 0 chr4 155758331 155758459 -46569888 - MER5A DNA MER1_type 0 189 44 240 301 0 48 chr4 155758660 155758763 -46569584 + L2 LINE L2 1325 1422 -1892 2178 281 72 15 chr4 155758989 155759932 -46568415 + L2 LINE L2 2272 3299 -14 3578 50 15 7 chr4 155760097 155760817 -46567530 - L1P2 LINE L1 -412 5742 5020 29 0 0 0 chr4 155760826 155760855 -46567492 + AT_rich Low_complexity Low_complexity 1 29 0 658 260 28 6 chr4 155761184 155761361 -46566986 + MIR SINE MIR 4 184 -78 405 290 120 44 chr4 155761503 155761686 -46566661 + L2 LINE L2 3073 3269 -3 2048 285 58 26 chr4 155761817 155762864 -46565483 - L2 LINE L2 -106 3207 2118 1426 250 100 38 chr4 155762905 155763485 -46564862 - L2 LINE L2 -2657 657 42 3212 143 16 26 chr4 155764527 155765137 -46563210 + L1MB3 LINE L1 5573 6176 -7 661 145 52 119 chr4 155765149 155765239 -46563108 - L1MB4 LINE L1 -229 5951 5857 2186 109 3 0 chr4 155765239 155765532 -46562815 + AluSx SINE Alu 1 294 -18 661 145 52 119 chr4 155765532 155765583 -46562764 - L1MB4 LINE L1 -323 5857 5824 7313 40 1 0 chr4 155765583 155767266 -46561081 + L1PA5 LINE L1 4453 6139 -15 661 145 52 119 chr4 155767266 155767316 -46561031 - L1MB4 LINE L1 -356 5824 5772 * 832 187 39 39 chr4 155767314 155767363 -46560984 + L1MB7 LINE L1 5976 6024 -160 1899 160 16 10 chr4 155767363 155767669 -46560678 - AluJb SINE Alu 0 312 5 832 187 39 39 chr4 155767669 155767822 -46560525 + L1MB7 LINE L1 6023 6178 -6 207 224 20 0 chr4 155767844 155767893 -46560454 + L3 LINE CR1 971 1020 -557 * 324 293 53 15 chr4 155767886 155768019 -46560328 + MIR SINE MIR 6 143 -119 2620 93 25 3 chr4 155768451 155768807 -46559540 - THE1B LTR MaLR 0 364 1 10271 92 26 65 chr4 155768807 155770450 -46557897 - THE1B-int LTR MaLR 0 1580 1 2055 123 37 9 chr4 155770455 155770804 -46557543 - THE1B LTR MaLR -5 359 1 374 291 68 8 chr4 155771985 155772102 -46556245 + MLT1K LTR MaLR 106 229 -359 439 269 89 111 chr4 155772155 155772515 -46555832 - LTR16C LTR ERVL -139 352 1 420 339 67 36 chr4 155772590 155772785 -46555562 - L2 LINE L2 0 3272 3072 204 241 0 17 chr4 155772954 155773012 -46555335 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 427 268 52 43 chr4 155774759 155774990 -46553357 - L1ME LINE L1 -337 5784 5552 263 368 76 57 chr4 155775096 155775411 -46552936 + L2 LINE L2 2876 3196 -76 277 345 112 35 chr4 155775671 155775868 -46552479 - L2 LINE L2 -4 3268 3057 619 261 101 15 chr4 155776536 155776735 -46551612 + MIR SINE MIR 47 262 0 405 263 34 0 chr4 155777296 155777414 -46550933 + MIR SINE MIR 141 262 0 549 226 34 27 chr4 155777504 155777650 -46550697 + L2 LINE L2 2568 2714 -600 426 293 15 41 chr4 155777864 155778134 -46550213 + L1M4 LINE L1 2311 2573 -3573 4346 57 0 4 chr4 155778370 155778914 -46549433 + L1PA6 LINE L1 5605 6146 -8 30 59 0 0 chr4 155778920 155778971 -46549376 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr4 155779536 155779564 -46548783 + AT_rich Low_complexity Low_complexity 1 28 0 315 191 16 16 chr4 155780282 155780345 -46548002 - MER5B DNA MER1_type -6 172 110 1397 306 73 25 chr4 155780478 155781405 -46546942 + L2 LINE L2 2330 3311 -2 2188 110 36 0 chr4 155781635 155781936 -46546411 - AluSq SINE Alu -1 312 1 3738 109 58 2 chr4 155784121 155784654 -46543693 + L1PA13 LINE L1 5592 6154 -9 2253 71 16 16 chr4 155784657 155784966 -46543381 + AluY SINE Alu 3 311 0 244 148 56 0 chr4 155785198 155785252 -46543095 - MLT2B2 LTR ERVL 0 520 464 202 218 18 0 chr4 155785253 155785363 -46542984 + (TA)n Simple_repeat Simple_repeat 1 112 0 755 185 53 0 chr4 155785375 155785530 -46542817 - MLT2B2 LTR ERVL -41 474 265 498 153 12 0 chr4 155785533 155785618 -46542729 - MLT2B1 LTR ERVL -434 86 1 2329 142 101 3 chr4 155785910 155786298 -46542049 + MSTB LTR MaLR 1 426 0 705 239 102 19 chr4 155787834 155788039 -46540308 + MIR SINE MIR 31 252 -10 600 253 132 0 chr4 155788082 155788264 -46540083 + MER58C DNA MER1_type 9 214 -1 361 159 0 0 chr4 155788281 155788344 -46540003 - L1MEc LINE L1 -4109 2287 2225 339 65 0 0 chr4 155788358 155788404 -46539943 - MADE1 DNA Mariner -1 79 34 334 211 0 0 chr4 155788408 155788465 -46539882 + Tigger5 DNA MER2_type 2265 2321 -2 455 330 109 7 chr4 155788496 155788927 -46539420 - L1MEc LINE L1 -4579 1817 1343 34 24 0 0 chr4 155789303 155789344 -46539003 + AT_rich Low_complexity Low_complexity 1 41 0 18149 26 0 0 chr4 155790514 155792627 -46535720 - L1HS LINE L1 -1253 4893 2781 8222 12 0 0 chr4 155792624 155793877 -46534470 + L1HS LINE L1 4903 6155 0 * 285 218 55 0 chr4 155795466 155795521 -46532826 + L2 LINE L2 3254 3311 -2 1925 146 0 0 chr4 155795786 155796061 -46532286 - AluSx SINE Alu -37 275 1 1231 114 29 0 chr4 155797549 155797724 -46530623 - AluSg/x SINE Alu -16 296 117 800 77 0 0 chr4 155797824 155797928 -46530419 + MLT2A2 LTR ERVL 350 453 0 21 57 0 0 chr4 155799151 155799186 -46529161 + AT_rich Low_complexity Low_complexity 1 35 0 739 206 20 7 chr4 155799672 155799818 -46528529 - MLT1A1 LTR MaLR -217 148 1 2679 28 3 31 chr4 155800040 155800364 -46527983 + L1PA2 LINE L1 5841 6155 0 352 277 123 40 chr4 155801196 155801340 -46527007 - L1ME4a LINE L1 -2 6119 5988 1935 135 0 50 chr4 155801340 155801658 -46526689 - AluSx SINE Alu -10 302 1 352 277 123 40 chr4 155801658 155801838 -46526509 - L1ME4a LINE L1 -133 5988 5768 565 209 8 45 chr4 155801838 155801972 -46526375 - FLAM_A SINE Alu -1 141 13 273 286 54 69 chr4 155802330 155802533 -46525814 + MLT1K LTR MaLR 215 414 -174 248 227 21 52 chr4 155802554 155802651 -46525696 + GA-rich Low_complexity Low_complexity 1 94 0 278 242 30 40 chr4 155803450 155803549 -46524798 + MER103 DNA DNA 65 162 -4 182 244 35 128 chr4 155803604 155803690 -46524657 - L2 LINE L2 -42 3271 3194 636 301 136 36 chr4 155803767 155804069 -46524278 - MER115 DNA AcHobo -68 625 294 1759 110 39 0 chr4 155804437 155804692 -46523655 + MLT2A2 LTR ERVL 1 265 -188 27 0 0 0 chr4 155805177 155805204 -46523143 + AT_rich Low_complexity Low_complexity 1 27 0 1953 108 84 0 chr4 155805213 155805499 -46522848 + AluSx SINE Alu 1 310 -2 5889 169 21 13 chr4 155805624 155806762 -46521585 - L1PA16 LINE L1 0 6166 5038 1828 95 12 4 chr4 155806762 155807005 -46521342 - AluSq SINE Alu -17 296 52 5889 169 21 13 chr4 155807005 155807023 -46521324 - L1PA16 LINE L1 -1128 5038 5022 2064 149 3 0 chr4 155807023 155807331 -46521016 + AluSx SINE Alu 1 309 -3 5889 169 21 13 chr4 155807331 155807935 -46520412 - L1PA16 LINE L1 -1144 5022 4391 189 0 0 0 chr4 155807935 155807956 -46520391 + (TG)n Simple_repeat Simple_repeat 2 22 0 5889 169 21 13 chr4 155807956 155808225 -46520122 - L1PA16 LINE L1 -1775 4391 4125 496 286 54 18 chr4 155810564 155810732 -46517615 + MIR SINE MIR 8 181 -81 279 159 174 0 chr4 155810736 155810786 -46517561 + L1 LINE L1 4608 4648 -1498 372 22 0 0 chr4 155810786 155810831 -46517516 + (CA)n Simple_repeat Simple_repeat 1 45 0 279 159 174 0 chr4 155810831 155810849 -46517498 + L1 LINE L1 4648 4688 -1458 710 250 138 29 chr4 155811148 155811417 -46516930 - L1ME4a LINE L1 -170 5951 5634 2748 32 0 0 chr4 155811417 155811725 -46516622 + AluY SINE Alu 1 308 -3 710 250 138 29 chr4 155811725 155811803 -46516544 - L1ME4a LINE L1 -487 5634 5566 1508 192 36 88 chr4 155811835 155812220 -46516127 + MLT1A1 LTR MaLR 1 365 0 387 288 148 53 chr4 155812388 155812822 -46515525 - L1MC/D LINE L1 -2070 5738 5264 257 339 46 31 chr4 155813009 155813139 -46515208 - L2 LINE L2 0 3313 3182 497 258 20 26 chr4 155813973 155814124 -46514223 - MIR SINE MIR -2 260 111 501 249 67 12 chr4 155814833 155814998 -46513349 - LTR67 LTR ERVL -1 556 383 22 0 0 0 chr4 155817221 155817243 -46511104 + AT_rich Low_complexity Low_complexity 1 22 0 231 227 0 0 chr4 155818641 155818707 -46509640 + (TG)n Simple_repeat Simple_repeat 2 67 0 333 0 0 0 chr4 155822837 155822874 -46505473 + (TG)n Simple_repeat Simple_repeat 1 37 0 231 88 0 0 chr4 155823255 155823291 -46505056 + (TG)n Simple_repeat Simple_repeat 1 70 0 231 88 0 0 chr4 155823291 155823325 -46505022 + (TG)n Simple_repeat Simple_repeat 2 35 0 252 303 0 0 chr4 155824095 155824171 -46504176 + G-rich Low_complexity Low_complexity 1 76 0 381 189 0 0 chr4 155824608 155824698 -46503649 + (CGG)n Simple_repeat Simple_repeat 2 91 0 22 0 0 0 chr4 155825037 155825059 -46503288 + AT_rich Low_complexity Low_complexity 1 22 0 321 26 0 0 chr4 155825397 155825435 -46502912 + (CCA)n Simple_repeat Simple_repeat 1 38 0 23 0 0 0 chr4 155826650 155826673 -46501674 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr4 155827136 155827162 -46501185 + (CA)n Simple_repeat Simple_repeat 2 27 0 459 0 0 0 chr4 155828321 155828372 -46499975 + (TC)n Simple_repeat Simple_repeat 1 51 0 371 191 0 11 chr4 155831711 155831800 -46496547 + CT-rich Low_complexity Low_complexity 3 90 0 225 0 0 0 chr4 155832744 155832769 -46495578 + (TG)n Simple_repeat Simple_repeat 2 26 0 1568 159 27 60 chr4 155833701 155834002 -46494345 + AluJo SINE Alu 3 293 -19 1868 156 10 13 chr4 155834690 155834991 -46493356 - AluJo SINE Alu -12 300 1 1958 140 19 7 chr4 155835820 155836127 -46492220 + AluSx SINE Alu 1 311 -1 376 256 24 49 chr4 155836177 155836341 -46492006 - HAL1b LINE L1 -2 1346 1187 3821 195 38 8 chr4 155836445 155837145 -46491202 - L1ME1 LINE L1 -5 6161 5410 1996 108 4 4 chr4 155837145 155837413 -46490934 - AluSc SINE Alu -18 291 24 3821 195 38 8 chr4 155837413 155837837 -46490510 - L1ME1 LINE L1 -756 5410 5000 816 296 34 47 chr4 155837838 155838212 -46490135 - L1ME4a LINE L1 -227 5894 5526 1638 185 125 3 chr4 155838212 155838563 -46489784 - MSTD LTR MaLR 0 396 3 816 296 34 47 chr4 155838563 155838657 -46489690 - L1ME4a LINE L1 -595 5526 5432 459 210 8 42 chr4 155838664 155838783 -46489564 - L1M3 LINE L1 -549 5634 5520 275 270 105 20 chr4 155839151 155839351 -46488996 - L1ME1 LINE L1 -1140 5006 4790 5789 147 27 5 chr4 155839867 155841333 -46487014 - L1PA16 LINE L1 -9 6157 4661 25 31 0 0 chr4 155842106 155842138 -46486209 + AT_rich Low_complexity Low_complexity 1 32 0 1616 263 74 17 chr4 155842600 155843111 -46485236 + MLT1H1 LTR MaLR 4 499 -56 337 202 0 21 chr4 155843304 155843398 -46484949 + CT-rich Low_complexity Low_complexity 2 93 0 494 286 25 15 chr4 155843411 155843607 -46484740 - L1MC4a LINE L1 -1979 5898 5701 5084 198 86 27 chr4 155843749 155844023 -46484324 + Charlie1a DNA MER1_type 7 264 -2497 2378 67 7 0 chr4 155844023 155844323 -46484024 + AluY SINE Alu 1 302 -9 5084 198 86 27 chr4 155844323 155844402 -46483945 + Charlie1a DNA MER1_type 264 337 -2424 17849 67 11 28 chr4 155844402 155847621 -46480726 + L1PA6 LINE L1 2954 6154 0 5084 198 86 27 chr4 155847621 155848574 -46479773 + Charlie1a DNA MER1_type 337 1400 -1361 1966 146 50 19 chr4 155848574 155848938 -46479409 + THE1C LTR MaLR 1 375 0 5084 198 86 27 chr4 155848938 155848994 -46479353 + Charlie1a DNA MER1_type 1400 1451 -4 561 306 92 27 chr4 155851086 155851639 -46476708 - L1MC4a LINE L1 -930 5285 4697 3197 207 51 43 chr4 155851671 155852616 -46475731 - L1ME2 LINE L1 -9 6155 5204 2142 119 0 19 chr4 155852619 155852937 -46475410 - AluSx SINE Alu 0 312 1 378 280 101 63 chr4 155852974 155853399 -46474948 - L1MC4a LINE L1 -4696 1700 1260 237 163 0 0 chr4 155853438 155853487 -46474860 + (TG)n Simple_repeat Simple_repeat 2 50 0 276 253 43 56 chr4 155853487 155853537 -46474810 - L1MC4a LINE L1 -5156 1240 1191 2254 100 21 0 chr4 155853537 155853827 -46474520 - AluSq SINE Alu -17 296 1 276 253 43 56 chr4 155853827 155853938 -46474409 - L1MC4a LINE L1 -5205 1191 1081 333 0 0 0 chr4 155855725 155855762 -46472585 + (CA)n Simple_repeat Simple_repeat 1 37 0 200 268 18 18 chr4 155857624 155857680 -46470667 + CT-rich Low_complexity Low_complexity 3 58 0 216 0 0 0 chr4 155858295 155858319 -46470028 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 213 262 0 48 chr4 155858416 155858500 -46469847 + CT-rich Low_complexity Low_complexity 1 80 0 24 53 0 0 chr4 155860967 155861005 -46467342 + GC_rich Low_complexity Low_complexity 1 38 0 615 71 0 0 chr4 155862678 155862763 -46465584 + (TA)n Simple_repeat Simple_repeat 2 86 0 243 0 0 0 chr4 155862762 155862789 -46465558 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 707 253 36 52 chr4 155863353 155863602 -46464745 - MER112 DNA MER1_type -15 245 1 930 122 22 0 chr4 155863927 155864066 -46464281 - L1PA16 LINE L1 -1 6165 6024 30 27 0 0 chr4 155864430 155864467 -46463880 + AT_rich Low_complexity Low_complexity 1 37 0 651 253 40 84 chr4 155864715 155865011 -46463336 - L2 LINE L2 -4 3309 3027 740 240 70 6 chr4 155865290 155865461 -46462886 + MIR SINE MIR 3 184 -78 739 298 46 37 chr4 155865499 155865848 -46462499 + MLT1I LTR MaLR 58 409 0 211 234 0 0 chr4 155865860 155865907 -46462440 + MIR SINE MIR 203 249 -13 1803 173 56 6 chr4 155866579 155866902 -46461445 + MER7A DNA MER2_type 1 337 -9 4073 159 25 5 chr4 155866993 155867739 -46460608 + L1MA8 LINE L1 5527 6287 -4 791 218 29 0 chr4 155868055 155868225 -46460122 - FAM SINE Alu 0 175 1 517 264 80 63 chr4 155868544 155869267 -46459080 - L1ME3 LINE L1 -214 5948 5221 2856 169 2 7 chr4 155869332 155869789 -46458558 - MER70A LTR ERVL -15 457 3 285 289 36 0 chr4 155869858 155869941 -46458406 + AluY SINE Alu 95 180 -121 688 146 0 0 chr4 155869942 155870045 -46458302 + FLAM_A SINE Alu 23 125 -17 3981 190 8 32 chr4 155870048 155870584 -46457763 - L1MB7 LINE L1 -64 6120 5612 2202 95 0 3 chr4 155870584 155870868 -46457479 - AluY SINE Alu -12 299 17 3981 190 8 32 chr4 155870868 155871208 -46457139 - L1MB7 LINE L1 -572 5612 5265 330 289 0 0 chr4 155871209 155871285 -46457062 - MIR SINE MIR -112 150 75 1331 309 44 36 chr4 155871800 155872411 -46455936 + L2 LINE L2 2196 2811 -503 1050 175 16 5 chr4 155872411 155872605 -46455742 - MSTB2 LTR MaLR 0 457 262 443 170 43 21 chr4 155872644 155872738 -46455609 - MSTB2 LTR MaLR -300 96 1 649 326 103 29 chr4 155872749 155873203 -46455144 + L2 LINE L2 2820 3307 -6 221 357 87 0 chr4 155873461 155873587 -46454760 - MIR3 SINE MIR -6 202 66 36 53 0 0 chr4 155873664 155873721 -46454626 + AT_rich Low_complexity Low_complexity 1 57 0 24 53 0 0 chr4 155874174 155874212 -46454135 + AT_rich Low_complexity Low_complexity 1 38 0 2219 213 63 18 chr4 155874317 155874862 -46453485 + MLT1E2 LTR MaLR 89 626 0 350 244 41 116 chr4 155874867 155875109 -46453238 - L1ME LINE L1 -330 5791 5568 2329 88 0 0 chr4 155875157 155875453 -46452894 - AluSc SINE Alu -13 296 1 5071 177 35 13 chr4 155875674 155877113 -46451234 + L1MA7 LINE L1 4821 6291 0 2135 119 3 0 chr4 155877137 155877422 -46450925 + AluSx SINE Alu 1 286 -26 557 247 129 0 chr4 155877629 155877791 -46450556 - MER5A DNA MER1_type 0 189 4 524 228 16 0 chr4 155878161 155878288 -46450059 + L1MA10 LINE L1 6194 6322 -12 353 240 0 0 chr4 155878714 155878789 -46449558 - L1MEc LINE L1 -4344 3402 3328 4512 138 15 15 chr4 155878794 155879571 -46448776 - L1MA5 LINE L1 0 6300 5524 1112 193 21 55 chr4 155879577 155879815 -46448532 + AluJo SINE Alu 1 230 -82 747 212 73 7 chr4 155879836 155880114 -46448233 - L1M1 LINE L1 -4410 3336 2849 465 277 81 5 chr4 155880143 155880523 -46447824 - L1MEc LINE L1 -5021 2725 2201 472 240 7 84 chr4 155880553 155880707 -46447640 - L1MEc LINE L1 -6210 1536 1395 198 0 0 0 chr4 155881405 155881427 -46446920 + (GGA)n Simple_repeat Simple_repeat 3 24 0 270 0 0 0 chr4 155881573 155881603 -46446744 + (CA)n Simple_repeat Simple_repeat 2 31 0 1068 245 92 49 chr4 155881603 155882073 -46446274 + LTR33 LTR ERVL 31 520 -1 291 28 0 0 chr4 155882673 155882709 -46445638 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 695 246 0 0 chr4 155884228 155884370 -46443977 + Tigger3(Golem) DNA MER2_type 1 142 -2887 * 1202 189 48 12 chr4 155884367 155884616 -46443731 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 4000 284 112 8 chr4 155884663 155886105 -46442242 - L2 LINE L2 -1631 1683 93 271 191 15 15 chr4 155886175 155886243 -46442104 + (TA)n Simple_repeat Simple_repeat 1 68 0 356 140 0 0 chr4 155886386 155886443 -46441904 - L1PA16 LINE L1 -252 5914 5858 405 288 117 0 chr4 155886524 155886687 -46441660 + L2 LINE L2 3121 3302 -11 258 311 148 57 chr4 155887355 155887564 -46440783 + MIR SINE MIR 29 256 -6 186 189 0 0 chr4 155890691 155890728 -46437619 + CT-rich Low_complexity Low_complexity 3 39 0 21 82 0 0 chr4 155890835 155890884 -46437463 + AT_rich Low_complexity Low_complexity 1 49 0 424 299 102 7 chr4 155891113 155891250 -46437097 - MIR3 SINE MIR -4 204 55 40575 38 24 4 chr4 155891327 155891654 -46436693 + L1P1 LINE L1 1 320 -5835 2837 10 0 0 chr4 155891654 155891963 -46436384 + AluYa5 SINE Alu 1 309 -2 40575 38 24 4 chr4 155891963 155897337 -46431010 + L1P1 LINE L1 320 5813 -342 421 313 106 3 chr4 155947337 155947657 -46380690 - L1M4 LINE L1 -3129 3017 2665 1252 180 23 19 chr4 155947815 155948110 -46380237 + L1PB4 LINE L1 5895 6190 0 24 32 0 0 chr4 155948276 155948307 -46380040 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 155949333 155949356 -46378991 + AT_rich Low_complexity Low_complexity 1 23 0 2029 122 0 7 chr4 155949752 155950040 -46378307 + AluSq SINE Alu 2 287 -26 362 326 70 8 chr4 155950155 155950284 -46378063 - L2 LINE L2 -17 3296 3160 700 196 42 7 chr4 155950352 155950495 -46377852 + AluJb SINE Alu 3 150 -162 2471 80 0 0 chr4 155950500 155950802 -46377545 + AluSc SINE Alu 4 305 -4 1489 321 89 18 chr4 155950843 155951678 -46376669 - L2 LINE L2 -262 3051 2150 374 333 91 0 chr4 155951727 155951859 -46376488 - L2 LINE L2 -921 2393 2250 284 254 48 0 chr4 155952344 155952407 -46375940 + L2 LINE L2 3142 3207 -65 11012 32 1 24 chr4 155953074 155955213 -46373134 + L1PA3 LINE L1 4079 6196 0 548 265 0 15 chr4 155955266 155955398 -46372949 - MIR SINE MIR -121 141 12 3107 168 28 20 chr4 155956497 155956804 -46371543 + L1MB7 LINE L1 5523 5826 -358 2233 79 45 3 chr4 155956804 155957094 -46371253 + AluY SINE Alu 1 302 -9 3107 168 28 20 chr4 155957094 155957388 -46370959 + L1MB7 LINE L1 5826 6129 -55 180 0 0 0 chr4 155958039 155958059 -46370288 + (T)n Simple_repeat Simple_repeat 1 20 0 1634 100 0 9 chr4 155958188 155958419 -46369928 - L1PA8A LINE L1 -28 6103 5875 379 313 109 0 chr4 155958729 155958857 -46369490 - MIR SINE MIR -110 152 11 458 85 0 43 chr4 155959300 155959394 -46368953 + (TTCC)n Simple_repeat Simple_repeat 4 93 0 446 196 10 0 chr4 155959402 155959504 -46368843 + C-rich Low_complexity Low_complexity 5 107 0 186 43 0 0 chr4 155960937 155960960 -46367387 + (GA)n Simple_repeat Simple_repeat 2 24 0 758 139 0 8 chr4 155960961 155961083 -46367264 + FLAM_C SINE Alu 2 122 -11 203 250 17 17 chr4 155961083 155961143 -46367204 + GA-rich Low_complexity Low_complexity 5 64 0 285 362 58 22 chr4 155961336 155961560 -46366787 + L2 LINE L2 3037 3268 -4 8836 232 50 38 chr4 155963515 155965746 -46362601 + L1M2a LINE L1 1 2203 -4964 1531 212 23 7 chr4 155965746 155966053 -46362294 + AluJo SINE Alu 1 312 0 8836 232 50 38 chr4 155966053 155966726 -46361621 + L1M2a LINE L1 2203 2866 -4301 2303 82 0 3 chr4 155966726 155967017 -46361330 - AluY SINE Alu -21 290 1 8836 232 50 38 chr4 155967017 155968706 -46359641 + L1M2a LINE L1 2866 4375 -2792 10800 30 0 2 chr4 155968706 155970777 -46357570 + L1PA4 LINE L1 4069 6154 -1 8836 232 50 38 chr4 155970777 155972166 -46356181 + L1M2a LINE L1 4375 5745 -1422 882 218 29 39 chr4 155972178 155972458 -46355889 + L1MA9 LINE L1 5998 6274 -38 2280 98 10 0 chr4 155972703 155973000 -46355347 + AluY SINE Alu 1 300 -11 4481 161 13 9 chr4 155973294 155974137 -46354210 - L1PBa LINE L1 -4631 2232 1387 12988 209 25 4 chr4 155974150 155977449 -46350898 + L1 LINE L1 1610 4942 -1204 225 94 31 62 chr4 155977449 155977545 -46350802 + (TA)n Simple_repeat Simple_repeat 1 93 0 2035 120 41 41 chr4 155977582 155977949 -46350398 + L1PB1 LINE L1 5782 6148 -3 216 0 0 0 chr4 155978672 155978696 -46349651 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 25 65 0 0 chr4 155979522 155979568 -46348779 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr4 155981256 155981288 -46347059 + AT_rich Low_complexity Low_complexity 1 32 0 568 143 0 0 chr4 155982148 155982232 -46346115 - AluS SINE Alu -228 84 1 24 32 0 0 chr4 155983225 155983256 -46345091 + AT_rich Low_complexity Low_complexity 1 31 0 357 336 0 0 chr4 155983930 155984040 -46344307 + MIR SINE MIR 33 142 -120 325 271 49 25 chr4 155984303 155984425 -46343922 - MIR SINE MIR -54 208 84 440 276 48 35 chr4 155984582 155984727 -46343620 + MIR3 SINE MIR 59 205 -3 424 320 6 34 chr4 155986801 155986979 -46341368 - MER5B DNA MER1_type 0 178 6 279 250 80 45 chr4 155987006 155987094 -46341253 - MER5A DNA MER1_type -86 103 13 491 252 118 8 chr4 155987386 155987513 -46340834 + MIR SINE MIR 14 154 -108 357 276 38 0 chr4 155987620 155987725 -46340622 + MIR SINE MIR 154 262 0 15908 216 31 27 chr4 155987983 155993875 -46334472 - L1PA15 LINE L1 -1 6815 850 324 49 0 0 chr4 155993930 155993971 -46334376 - MADE1 DNA Mariner -39 41 1 272 283 71 0 chr4 155993991 155994090 -46334257 - MIR3 SINE MIR -53 155 50 570 194 75 25 chr4 155994513 155994673 -46333674 - L2 LINE L2 -788 2526 2359 414 0 0 0 chr4 155995618 155995664 -46332683 + (TG)n Simple_repeat Simple_repeat 2 47 0 25 65 0 0 chr4 155997601 155997647 -46330700 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr4 155997656 155997680 -46330667 + AT_rich Low_complexity Low_complexity 1 24 0 769 110 29 22 chr4 155998380 155998542 -46329805 - L1MA8 LINE L1 0 6291 6155 212 151 70 35 chr4 155999383 155999469 -46328878 + (CTATA)n Simple_repeat Simple_repeat 2 90 0 26 30 0 0 chr4 155999598 155999631 -46328716 + AT_rich Low_complexity Low_complexity 1 33 0 316 293 36 50 chr4 155999678 155999734 -46328613 + MIR3 SINE MIR 43 98 -110 2074 164 19 6 chr4 155999734 156000094 -46328253 + MLT1A1 LTR MaLR 1 365 0 316 293 36 50 chr4 156000094 156000177 -46328170 + MIR3 SINE MIR 98 180 -28 186 71 0 0 chr4 156000404 156000432 -46327915 + (TG)n Simple_repeat Simple_repeat 2 29 0 935 99 0 0 chr4 156000510 156000631 -46327716 - AluSp/q SINE Alu -15 298 178 553 324 69 24 chr4 156000792 156001039 -46327308 - L3b LINE CR1 -224 1359 1102 239 312 13 0 chr4 156001143 156001220 -46327127 - MIR SINE MIR -111 151 74 200 135 0 27 chr4 156001263 156001300 -46327047 + (TA)n Simple_repeat Simple_repeat 2 37 0 273 29 0 0 chr4 156001300 156001334 -46327013 + (CA)n Simple_repeat Simple_repeat 2 35 0 1165 168 0 36 chr4 156002146 156002366 -46325981 + AluJb SINE Alu 1 212 -100 331 219 0 0 chr4 156004419 156004492 -46323855 - L1MA10 LINE L1 -13 6321 6249 213 211 39 19 chr4 156004624 156004676 -46323671 + MER5B DNA MER1_type 20 72 -106 * 444 241 46 103 chr4 156004630 156004804 -46323543 - MER5A DNA MER1_type -25 164 1 419 239 142 13 chr4 156004972 156005127 -46323220 - MER112 DNA MER1_type -85 175 1 567 291 145 43 chr4 156005127 156005495 -46322852 + L2 LINE L2 2659 3084 -229 2419 78 3 0 chr4 156005495 156005802 -46322545 - AluY SINE Alu -3 308 1 567 291 145 43 chr4 156005802 156005870 -46322477 + L2 LINE L2 3084 3144 -169 248 248 88 128 chr4 156005877 156006127 -46322220 + LTR67 LTR ERVL 22 261 -296 14648 116 26 43 chr4 156006488 156008929 -46319418 + Tigger1 DNA MER2_type 1 2399 -19 438 81 0 54 chr4 156010143 156010217 -46318130 - L1PA10 LINE L1 -1 6167 6098 180 229 98 16 chr4 156011690 156011751 -46316596 - MIR3 SINE MIR 0 208 143 385 216 11 11 chr4 156012137 156012225 -46316122 + L1MC5 LINE L1 6738 6825 -1136 1668 241 76 45 chr4 156012575 156013188 -46315159 - L1MEc LINE L1 -4471 1925 1276 261 0 0 0 chr4 156013188 156013217 -46315130 + (TA)n Simple_repeat Simple_repeat 1 29 0 1668 241 76 45 chr4 156013217 156013476 -46314871 - L1MEc LINE L1 -5120 1276 1026 26 30 0 0 chr4 156013820 156013853 -46314494 + AT_rich Low_complexity Low_complexity 1 33 0 2331 92 10 0 chr4 156013964 156014269 -46314078 + AluY SINE Alu 1 308 -3 267 380 0 18 chr4 156014384 156014497 -46313850 - MIR3 SINE MIR -97 111 1 229 286 0 0 chr4 156016091 156016140 -46312207 - L2 LINE L2 -5 3267 3219 2266 102 0 10 chr4 156017050 156017364 -46310983 + AluY SINE Alu 1 311 0 31753 100 9 23 chr4 156019303 156025767 -46302580 + L1PA7 LINE L1 3 6466 -3 295 119 0 0 chr4 156025787 156025829 -46302518 - MER116 DNA Mariner -38 42 1 2011 121 3 3 chr4 156025941 156026223 -46302124 - AluSx SINE Alu -6 306 25 309 283 71 10 chr4 156026591 156026690 -46301657 - MIR SINE MIR -48 214 110 2153 103 40 7 chr4 156027011 156027311 -46301036 + AluSx SINE Alu 1 310 -2 282 250 188 21 chr4 156027715 156027811 -46300536 - MIR SINE MIR -62 200 89 3985 240 62 7 chr4 156028304 156029509 -46298838 + L1M4 LINE L1 2369 3640 -2506 23 33 0 0 chr4 156029683 156029713 -46298634 + AT_rich Low_complexity Low_complexity 1 30 0 210 118 0 0 chr4 156029799 156029833 -46298514 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 341 276 113 22 chr4 156029833 156030108 -46298239 - L1M4 LINE L1 -1331 4815 4516 277 247 12 25 chr4 156030553 156030634 -46297713 + HAL1 LINE L1 1607 1686 -821 982 259 8 35 chr4 156031019 156031278 -46297069 + MIR SINE MIR 11 262 0 337 289 119 63 chr4 156031297 156031758 -46296589 - L1M4 LINE L1 -2846 3300 2814 263 290 72 21 chr4 156032092 156032285 -46296062 - L1M4 LINE L1 -3644 2502 2300 25 31 0 0 chr4 156035932 156035964 -46292383 + AT_rich Low_complexity Low_complexity 1 32 0 38 0 0 0 chr4 156036021 156036059 -46292288 + AT_rich Low_complexity Low_complexity 1 38 0 221 108 93 23 chr4 156036062 156036191 -46292156 + (TATAA)n Simple_repeat Simple_repeat 1 138 0 32 67 0 0 chr4 156036199 156036259 -46292088 + AT_rich Low_complexity Low_complexity 1 60 0 23 33 0 0 chr4 156036420 156036450 -46291897 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr4 156036744 156036780 -46291567 + AT_rich Low_complexity Low_complexity 1 36 0 477 289 113 34 chr4 156038552 156038791 -46289556 + MIR SINE MIR 2 259 -3 189 241 56 19 chr4 156039904 156039958 -46288389 - MIR3 SINE MIR -10 198 143 210 200 0 0 chr4 156040394 156040434 -46287913 - MIR SINE MIR -61 147 108 22 35 0 0 chr4 156040521 156040550 -46287797 + AT_rich Low_complexity Low_complexity 1 29 0 385 323 51 20 chr4 156040708 156041064 -46287283 + L2 LINE L2 2309 2675 -639 21 36 0 0 chr4 156041119 156041147 -46287200 + AT_rich Low_complexity Low_complexity 1 28 0 746 197 27 21 chr4 156041320 156041508 -46286839 + MER53 DNA DNA 1 189 0 1591 86 40 5 chr4 156041548 156041770 -46286577 - MER30 DNA MER1_type 0 230 1 288 280 37 53 chr4 156043089 156043278 -46285069 + L2 LINE L2 2686 2871 -443 258 268 0 52 chr4 156043470 156043567 -46284780 - MIR SINE MIR -71 191 100 23 33 0 0 chr4 156043653 156043683 -46284664 + AT_rich Low_complexity Low_complexity 1 30 0 392 288 147 11 chr4 156043764 156043941 -46284406 + L2 LINE L2 3113 3313 0 2136 106 3 7 chr4 156045976 156046291 -46282056 + AluSq SINE Alu 1 314 0 2146 135 0 0 chr4 156046639 156046936 -46281411 - AluSx SINE Alu -15 297 1 493 239 12 49 chr4 156047889 156048052 -46280295 + MER103 DNA DNA 8 164 -2 29 0 0 0 chr4 156048422 156048451 -46279896 + AT_rich Low_complexity Low_complexity 1 29 0 31 44 0 0 chr4 156049959 156050004 -46278343 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr4 156051025 156051051 -46277296 + AT_rich Low_complexity Low_complexity 1 26 0 1119 57 25 6 chr4 156051413 156051570 -46276777 - L1PA13 LINE L1 -4 6159 6000 1051 284 126 17 chr4 156051914 156052423 -46275924 - L2 LINE L2 0 3313 2750 252 259 0 0 chr4 156052520 156052574 -46275773 + L1ME4a LINE L1 5984 6037 -84 926 150 29 6 chr4 156053012 156053185 -46275162 - L1MB2 LINE L1 -2 6169 5993 216 264 0 0 chr4 156053227 156053280 -46275067 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 491 286 50 73 chr4 156057297 156057793 -46270554 + HAL1b LINE L1 245 729 -619 22 0 0 0 chr4 156057923 156057945 -46270402 + AT_rich Low_complexity Low_complexity 1 22 0 2277 105 85 3 chr4 156058683 156059036 -46269311 + L1PA11 LINE L1 5792 6173 -1 2153 123 121 43 chr4 156059105 156059155 -46269192 - MSTA LTR MaLR 0 428 383 262 0 26 26 chr4 156059155 156059194 -46269153 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 12845 39 5 1 chr4 156059194 156061511 -46266836 - L1PA4 LINE L1 -16 6139 3817 2153 123 121 43 chr4 156061511 156061856 -46266491 - MSTA LTR MaLR -44 384 1 225 191 0 0 chr4 156063004 156063051 -46265296 + A-rich Low_complexity Low_complexity 1 47 0 351 206 55 0 chr4 156063581 156063654 -46264693 + MLT1C LTR MaLR 1 77 -390 * 874 163 0 0 chr4 156063649 156063784 -46264563 + MLT1C LTR MaLR 333 467 0 33 25 0 0 chr4 156064481 156064521 -46263826 + AT_rich Low_complexity Low_complexity 1 40 0 477 300 29 53 chr4 156064886 156065056 -46263291 + MIR3 SINE MIR 31 196 -12 252 263 150 0 chr4 156065188 156065321 -46263026 + MIR SINE MIR 104 256 -6 316 333 48 24 chr4 156066226 156066394 -46261953 - MIR3 SINE MIR -16 192 21 260 361 14 42 chr4 156066579 156066644 -46261703 - MIR SINE MIR -111 151 86 2107 137 25 0 chr4 156066644 156067003 -46261344 - L1MB1 LINE L1 -3 6165 5798 260 361 14 42 chr4 156067003 156067081 -46261266 - MIR SINE MIR -176 86 12 25 0 0 0 chr4 156067214 156067239 -46261108 + AT_rich Low_complexity Low_complexity 1 25 0 494 128 13 0 chr4 156068108 156068186 -46260161 + MADE1 DNA Mariner 1 79 -1 437 253 42 11 chr4 156068691 156068786 -46259561 + MER81 DNA DNA 17 114 0 21 71 0 0 chr4 156068922 156068964 -46259383 + AT_rich Low_complexity Low_complexity 1 42 0 245 242 91 0 chr4 156070782 156070848 -46257499 + MIR SINE MIR 71 142 -66 213 205 0 0 chr4 156070880 156070919 -46257428 + (CA)n Simple_repeat Simple_repeat 2 40 0 196 292 0 0 chr4 156070936 156070984 -46257363 + L2 LINE L2 3250 3297 -16 203 296 65 37 chr4 156075127 156075235 -46253112 - MIR3 SINE MIR -7 201 91 232 333 41 55 chr4 156075303 156075522 -46252825 + MIR SINE MIR 47 262 0 344 253 53 53 chr4 156076586 156076736 -46251611 - L1ME4a LINE L1 -38 6083 5934 2173 118 3 3 chr4 156076911 156077217 -46251130 - AluSg SINE Alu -4 306 1 482 255 134 28 chr4 156077623 156077839 -46250508 - MIR SINE MIR -14 248 10 741 128 94 0 chr4 156078260 156078377 -46249970 + FRAM SINE Alu 38 165 -11 674 303 79 0 chr4 156078404 156078645 -46249702 + MIR SINE MIR 2 261 -1 316 273 273 8 chr4 156079619 156079751 -46248596 + MER5A DNA MER1_type 8 174 -15 4558 213 53 12 chr4 156080803 156083700 -46244647 - L1MB7 LINE L1 -302 5882 2797 204 300 17 100 chr4 156083700 156083880 -46244467 + L2 LINE L2 3024 3188 -125 2203 147 50 38 chr4 156084685 156085106 -46243241 - MSTB LTR MaLR 0 426 1 2021 56 0 0 chr4 156085486 156085736 -46242611 - L1PA3 LINE L1 0 6155 5906 30 27 0 0 chr4 156086399 156086436 -46241911 + AT_rich Low_complexity Low_complexity 1 37 0 1191 156 18 4 chr4 156087953 156088178 -46240169 - L1MA9 LINE L1 0 6312 6085 1519 104 119 0 chr4 156088208 156088459 -46239888 - L1PA16 LINE L1 -9 6157 5877 514 251 111 12 chr4 156088481 156088652 -46239695 - L1ME4a LINE L1 -2001 5807 5620 450 293 24 0 chr4 156088808 156088931 -46239416 + MIR SINE MIR 65 190 -72 949 264 164 26 chr4 156088949 156089332 -46239015 + MLT1D LTR MaLR 27 462 -43 25 0 0 0 chr4 156089538 156089563 -46238784 + AT_rich Low_complexity Low_complexity 1 25 0 520 344 102 0 chr4 156089577 156089891 -46238456 - L2 LINE L2 -727 2587 2242 2161 197 60 20 chr4 156089895 156090346 -46238001 + MLT2B1 LTR ERVL 1 469 -51 249 254 14 14 chr4 156090357 156090428 -46237919 + MLT1C LTR MaLR 389 459 -8 231 132 0 0 chr4 156090455 156090493 -46237854 + MLT2C2 LTR ERVL 414 451 -13 187 270 258 0 chr4 156090504 156090663 -46237684 - L2 LINE L2 -1070 2244 2045 2361 86 0 0 chr4 156090823 156091124 -46237223 - AluY SINE Alu -10 301 1 195 42 0 0 chr4 156091689 156091713 -46236634 + (TA)n Simple_repeat Simple_repeat 1 24 0 1166 209 13 39 chr4 156093180 156093414 -46234933 + Tigger7 DNA MER2_type 2 229 -504 638 182 18 0 chr4 156093414 156093524 -46234823 + Tigger7 DNA MER2_type 2376 2487 0 23 33 0 0 chr4 156093542 156093572 -46234775 + AT_rich Low_complexity Low_complexity 1 30 0 547 308 28 43 chr4 156095087 156095298 -46233049 + MIR SINE MIR 26 233 -29 580 230 48 38 chr4 156095627 156095830 -46232517 + MIR SINE MIR 5 213 -49 23 33 0 0 chr4 156096090 156096120 -46232227 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr4 156096666 156096687 -46231660 + (CA)n Simple_repeat Simple_repeat 1 21 0 24 53 0 0 chr4 156096808 156096846 -46231501 + AT_rich Low_complexity Low_complexity 1 38 0 39 22 0 0 chr4 156097241 156097287 -46231060 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr4 156097406 156097431 -46230916 + AT_rich Low_complexity Low_complexity 1 25 0 26 74 0 0 chr4 156097520 156097574 -46230773 + AT_rich Low_complexity Low_complexity 1 54 0 2048 129 7 10 chr4 156098515 156098817 -46229530 - AluSx SINE Alu -11 301 1 836 147 15 22 chr4 156098817 156098953 -46229394 - AluSq/x SINE Alu -178 135 1 1324 227 90 6 chr4 156099712 156100034 -46228313 - LTR16C LTR ERVL -3 488 140 272 277 246 0 chr4 156100109 156100239 -46228108 + MIR SINE MIR 95 256 -6 547 274 58 30 chr4 156100415 156100813 -46227534 + L1ME4a LINE L1 5713 6121 0 23 86 0 0 chr4 156101012 156101070 -46227277 + AT_rich Low_complexity Low_complexity 1 58 0 1128 118 0 0 chr4 156101865 156102017 -46226330 + AluSg/x SINE Alu 137 288 -24 883 302 4 8 chr4 156102572 156102817 -46225530 + MIR SINE MIR 12 255 -7 333 259 93 19 chr4 156103330 156103438 -46224909 + MIR SINE MIR 18 133 -75 604 307 19 37 chr4 156103586 156103801 -46224546 + MIR SINE MIR 22 232 -30 453 300 30 65 chr4 156103783 156103983 -46224364 - L2 LINE L2 -17 3296 3104 * 533 302 148 19 chr4 156104091 156104490 -46223857 - L2 LINE L2 -161 3152 2717 473 352 85 8 chr4 156104744 156104980 -46223367 + MIR SINE MIR 7 260 -2 239 309 0 24 chr4 156108142 156108226 -46220121 - L2 LINE L2 -56 3257 3176 240 59 0 0 chr4 156108278 156108312 -46220035 + (TG)n Simple_repeat Simple_repeat 2 35 0 796 181 0 0 chr4 156109440 156109573 -46218774 + FLAM_C SINE Alu 1 133 0 478 342 0 7 chr4 156110439 156110591 -46217756 - MIR3 SINE MIR -28 180 30 350 365 83 13 chr4 156111692 156111922 -46216425 + L3 LINE CR1 1228 1473 -104 1071 196 9 18 chr4 156111922 156112141 -46216206 - MER20 DNA MER1_type -1 218 2 354 258 47 16 chr4 156112202 156112330 -46216017 - MIR SINE MIR -56 206 75 510 269 53 53 chr4 156113365 156113573 -46214774 + L2 LINE L2 3103 3310 -3 703 180 133 7 chr4 156114440 156114547 -46213800 + L1MD2 LINE L1 6026 6159 -200 342 0 0 0 chr4 156114547 156114585 -46213762 + (CA)n Simple_repeat Simple_repeat 2 39 0 703 180 133 7 chr4 156114585 156114627 -46213720 + L1MD2 LINE L1 6159 6194 -165 991 138 53 0 chr4 156114636 156114824 -46213523 - L1MA4 LINE L1 -6 6294 6097 277 216 95 0 chr4 156114826 156114900 -46213447 - L1MA4 LINE L1 -160 6140 6060 651 239 0 13 chr4 156114919 156115078 -46213269 + L1MD2 LINE L1 6181 6337 -22 705 185 37 22 chr4 156115346 156115481 -46212866 + MER8 DNA MER2_type 103 239 0 27 0 0 0 chr4 156116269 156116296 -46212051 + AT_rich Low_complexity Low_complexity 1 27 0 2786 106 19 2 chr4 156116518 156116935 -46211412 - L1P4 LINE L1 -452 5709 5286 221 306 200 12 chr4 156117420 156117580 -46210767 - MIR SINE MIR -51 211 22 180 341 91 34 chr4 156117935 156118023 -46210324 + L2 LINE L2 3148 3240 -32 397 22 0 0 chr4 156118337 156118382 -46209965 - L1PA4 LINE L1 -80 6075 6031 477 131 50 20 chr4 156118424 156118523 -46209824 + L1MA7 LINE L1 6089 6190 -101 2031 97 38 0 chr4 156120788 156120916 -46207431 + AluSq SINE Alu 1 123 -190 198 0 0 0 chr4 156120916 156120938 -46207409 + (CA)n Simple_repeat Simple_repeat 1 22 0 2031 97 38 0 chr4 156120938 156121099 -46207248 + AluSq SINE Alu 123 301 -12 691 219 0 0 chr4 156121519 156121647 -46206700 + FLAM_A SINE Alu 1 128 -5 743 174 0 0 chr4 156122181 156122296 -46206051 + FLAM_C SINE Alu 1 115 -18 24 0 0 0 chr4 156122296 156122320 -46206027 + AT_rich Low_complexity Low_complexity 1 24 0 204 200 0 0 chr4 156122778 156122828 -46205519 + (CA)n Simple_repeat Simple_repeat 1 50 0 24 0 0 0 chr4 156125078 156125102 -46203245 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 156125321 156125342 -46203005 + AT_rich Low_complexity Low_complexity 1 21 0 243 247 157 0 chr4 156126042 156126131 -46202216 - MARNA DNA Mariner -19 567 465 1449 119 44 0 chr4 156126215 156126441 -46201906 + L1PA8A LINE L1 2 237 -5638 * 26013 131 5 8 chr4 156126440 156131153 -46197194 + L1PA8A LINE L1 1434 6128 -318 1145 118 94 0 chr4 156131439 156131609 -46196738 + AluSg/x SINE Alu 119 304 -6 666 283 45 29 chr4 156131660 156131904 -46196443 - MIR SINE MIR -6 256 9 272 215 44 96 chr4 156131916 156132051 -46196296 + MER112 DNA MER1_type 109 236 -24 205 98 49 0 chr4 156132070 156132111 -46196236 + (CATA)n Simple_repeat Simple_repeat 2 44 0 204 304 20 59 chr4 156132389 156132491 -46195856 - L2 LINE L2 -38 3275 3178 873 259 92 0 chr4 156132705 156132944 -46195403 + MIR SINE MIR 2 262 0 402 189 40 0 chr4 156133036 156133110 -46195237 - L2 LINE L2 -10 3303 3227 * 743 306 148 16 chr4 156133108 156133419 -46194928 + L2 LINE L2 2423 2774 -540 24 67 0 0 chr4 156133564 156133609 -46194738 + AT_rich Low_complexity Low_complexity 1 45 0 329 173 0 0 chr4 156134309 156134361 -46193986 - Tigger1 DNA MER2_type -2366 52 1 254 161 0 18 chr4 156134491 156134547 -46193800 + (CATA)n Simple_repeat Simple_repeat 2 56 0 233 89 0 0 chr4 156134579 156134624 -46193723 + LTR66 LTR ERVL 394 438 -172 23 54 0 0 chr4 156134818 156134855 -46193492 + AT_rich Low_complexity Low_complexity 1 37 0 753 186 0 0 chr4 156135565 156135694 -46192653 + FLAM_C SINE Alu 1 129 -14 189 386 98 18 chr4 156135958 156136121 -46192226 - MIR SINE MIR -52 210 35 180 111 0 0 chr4 156136381 156136408 -46191939 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 230 236 0 14 chr4 156136470 156136542 -46191805 + CT-rich Low_complexity Low_complexity 1 71 0 2341 84 0 7 chr4 156137279 156137576 -46190771 + AluY SINE Alu 1 295 -16 2263 315 141 8 chr4 156138491 156139750 -46188597 - L2 LINE L2 -416 2898 1472 1908 161 3 3 chr4 156143679 156143971 -46184376 + AluSx SINE Alu 3 294 -18 23 0 0 0 chr4 156144107 156144130 -46184217 + AT_rich Low_complexity Low_complexity 1 23 0 1627 249 94 80 chr4 156144977 156145518 -46182829 - MLT1G LTR MaLR -44 546 3 723 205 23 65 chr4 156145863 156146078 -46182269 - L2 LINE L2 -8 3305 3100 829 301 40 46 chr4 156146109 156146434 -46181913 - L2 LINE L2 -454 2860 2538 22 35 0 0 chr4 156146907 156146936 -46181411 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr4 156149162 156149197 -46179150 + AT_rich Low_complexity Low_complexity 1 35 0 270 143 14 29 chr4 156150835 156150905 -46177442 + GA-rich Low_complexity Low_complexity 3 71 0 328 245 252 7 chr4 156152116 156152255 -46176092 + MIR3 SINE MIR 13 185 -23 271 361 69 21 chr4 156155904 156156048 -46172299 - L2 LINE L2 0 3272 3122 227 349 31 65 chr4 156156236 156156560 -46171787 - L2 LINE L2 -412 2902 2590 189 0 0 0 chr4 156156907 156156928 -46171419 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 27 49 0 0 chr4 156160947 156160988 -46167359 + AT_rich Low_complexity Low_complexity 1 41 0 2133 131 3 0 chr4 156163334 156163632 -46164715 - AluSx SINE Alu -11 301 3 26 101 0 0 chr4 156163716 156163805 -46164542 + AT_rich Low_complexity Low_complexity 1 89 0 448 303 174 11 chr4 156163857 156164186 -46164161 + L2 LINE L2 2651 3047 -266 333 328 102 60 chr4 156164370 156164654 -46163693 + L2 LINE L2 2855 3150 -122 2234 65 0 7 chr4 156165193 156165468 -46162879 + AluY SINE Alu 38 310 -1 734 293 34 68 chr4 156165902 156166370 -46161977 - MLT1J LTR MaLR -35 476 25 556 279 57 141 chr4 156166416 156166947 -46161400 + L2 LINE L2 2826 3311 -2 292 281 31 0 chr4 156167394 156167490 -46160857 + GA-rich Low_complexity Low_complexity 1 99 0 1933 180 76 43 chr4 156168971 156169460 -46158887 + MLT1D LTR MaLR 1 505 0 566 265 172 27 chr4 156169564 156169971 -46158376 + L1ME4a LINE L1 5554 6019 -102 363 200 9 9 chr4 156170592 156170821 -46157526 + (TA)n Simple_repeat Simple_repeat 1 229 0 207 0 0 0 chr4 156171432 156171455 -46156892 + (CAA)n Simple_repeat Simple_repeat 2 24 0 263 283 0 0 chr4 156172369 156172429 -46155918 + L2 LINE L2 3213 3272 0 469 285 26 26 chr4 156172807 156172958 -46155389 - LTR67 LTR ERVL -7 550 400 233 281 37 49 chr4 156173172 156173254 -46155093 - LTR67 LTR ERVL -363 194 114 1265 173 17 139 chr4 156176732 156177148 -46151199 + MLT1A1 LTR MaLR 1 365 0 817 283 95 41 chr4 156177214 156177603 -46150744 + MLT1K LTR MaLR 179 588 0 22 0 0 0 chr4 156177729 156177751 -46150596 + AT_rich Low_complexity Low_complexity 1 22 0 315 238 139 20 chr4 156180101 156180252 -46148095 - L3 LINE CR1 -637 940 772 302 109 73 0 chr4 156180923 156180978 -46147369 - MLT1K LTR MaLR -18 570 512 304 288 42 17 chr4 156181183 156181301 -46147046 + L2 LINE L2 3193 3313 0 723 248 74 12 chr4 156181627 156181869 -46146478 - HAL1 LINE L1 -784 1723 1467 743 279 71 46 chr4 156181888 156182214 -46146133 - MLT1I LTR MaLR -29 380 47 548 307 84 75 chr4 156182318 156182711 -46145636 - HAL1 LINE L1 -1158 1349 950 3398 89 20 12 chr4 156182711 156183218 -46145129 - L1MA3 LINE L1 0 6305 5795 548 307 84 75 chr4 156183218 156183277 -46145070 - HAL1 LINE L1 -1557 950 893 719 330 135 44 chr4 156184423 156185053 -46143294 + ERVL LTR ERVL 1562 2248 -3516 233 118 20 0 chr4 156186095 156186146 -46142201 + T-rich Low_complexity Low_complexity 4 55 0 260 325 32 16 chr4 156186361 156186487 -46141860 + LTR67 LTR ERVL 430 557 0 391 223 123 8 chr4 156187138 156187268 -46141079 - Charlie2 DNA MER1_type -2645 217 73 2069 132 0 3 chr4 156187275 156187585 -46140762 + AluSc SINE Alu 1 309 0 230 286 174 10 chr4 156188450 156188548 -46139799 - L2 LINE L2 -41 3231 3118 1463 178 26 88 chr4 156189956 156190343 -46138004 - MLT1A1 LTR MaLR -2 363 1 691 338 106 9 chr4 156190489 156190912 -46137435 + LTR16B LTR ERVL 1 464 0 922 309 55 22 chr4 156191053 156191470 -46136877 + ERVL LTR ERVL 4054 4484 -1280 648 350 120 4 chr4 156191525 156191976 -46136371 + ERVL LTR ERVL 4568 5070 -694 957 283 78 52 chr4 156192458 156192999 -46135348 + LTR67 LTR ERVL 2 556 -1 335 326 21 0 chr4 156193209 156193304 -46135043 - MIR SINE MIR -164 98 2 317 346 37 25 chr4 156196011 156196173 -46132174 - L2 LINE L2 -245 3068 2905 774 245 71 40 chr4 156196188 156196639 -46131708 + MLT1E LTR MaLR 28 586 -7 230 298 184 0 chr4 156196658 156196772 -46131575 - L2 LINE L2 -419 2895 2761 471 345 132 14 chr4 156196773 156197190 -46131157 - L2 LINE L2 -682 2632 2167 25 0 0 0 chr4 156197316 156197341 -46131006 + AT_rich Low_complexity Low_complexity 1 25 0 1834 207 14 6 chr4 156197650 156198012 -46130335 - MLT1A1 LTR MaLR 0 365 1 35 0 0 0 chr4 156198765 156198800 -46129547 + AT_rich Low_complexity Low_complexity 1 35 0 2416 119 6 3 chr4 156199845 156200199 -46128148 + THE1A LTR MaLR 1 355 0 11729 94 9 2 chr4 156200199 156201768 -46126579 + THE1A-int LTR MaLR 1 1580 0 2294 103 8 46 chr4 156201768 156202137 -46126210 + THE1A LTR MaLR 1 355 0 192 200 0 0 chr4 156202862 156202907 -46125440 + (CA)n Simple_repeat Simple_repeat 1 45 0 367 333 52 22 chr4 156203748 156203883 -46124464 + MER91A DNA MER1_type 36 174 -22 22 0 0 0 chr4 156204768 156204790 -46123557 + AT_rich Low_complexity Low_complexity 1 22 0 868 117 3 2 chr4 156204867 156205006 -46123341 + MLT2D LTR ERVL 1 122 -292 786 148 3 29 chr4 156205090 156205501 -46122846 + (TA)n Simple_repeat Simple_repeat 1 400 0 3272 168 21 6 chr4 156205564 156206190 -46122157 - L1MA5 LINE L1 0 6300 5666 2876 211 96 21 chr4 156206280 156207038 -46121309 - MER21B LTR ERV1 -30 833 19 388 214 0 22 chr4 156207072 156207161 -46121186 - MER21B LTR ERV1 -776 87 1 183 80 0 0 chr4 156207165 156207190 -46121157 + (CA)n Simple_repeat Simple_repeat 1 25 0 2192 105 7 3 chr4 156207915 156208210 -46120137 + AluSx SINE Alu 1 296 -16 3449 152 21 23 chr4 156208255 156208875 -46119472 + LTR31 LTR ERV1 1 619 0 213 231 39 39 chr4 156210109 156210161 -46118186 - L2 LINE L2 -32 3240 3189 352 300 64 14 chr4 156211474 156211614 -46116733 - MIR SINE MIR -14 248 102 228 287 74 74 chr4 156212737 156212859 -46115488 - MIR3 SINE MIR -32 176 55 341 320 0 31 chr4 156213027 156213155 -46115192 + MIR3 SINE MIR 85 208 0 190 309 60 24 chr4 156214493 156214577 -46113770 + L2 LINE L2 367 453 -2861 2333 110 0 0 chr4 156216151 156216459 -46111888 - AluY SINE Alu -3 308 1 207 204 0 20 chr4 156216665 156216714 -46111633 + GA-rich Low_complexity Low_complexity 4 51 0 350 247 0 0 chr4 156217154 156217227 -46111120 + MIR SINE MIR 81 153 -109 560 283 59 24 chr4 156218393 156218810 -46109537 - LTR16B LTR ERVL -15 449 1 976 319 86 29 chr4 156218827 156220476 -46107871 - ERVL LTR ERVL -17 5122 3375 671 245 92 48 chr4 156220761 156221279 -46107068 + L1MEc LINE L1 520 981 -5089 180 0 0 0 chr4 156221279 156221299 -46107048 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 671 245 92 48 chr4 156221299 156221414 -46106933 + L1MEc LINE L1 981 1089 -4981 2230 111 3 22 chr4 156221416 156221732 -46106615 + AluSg SINE Alu 1 310 0 883 283 30 4 chr4 156221744 156222063 -46106284 + L1M2 LINE L1 1565 1967 -4249 396 97 0 0 chr4 156222083 156222145 -46106202 + L1PA16 LINE L1 6101 6162 -4 8846 231 54 19 chr4 156222151 156225951 -46102396 - L1PA13 LINE L1 -2853 3944 1 249 286 0 39 chr4 156225941 156226095 -46102252 + L1M2 LINE L1 2308 2455 -3760 * 700 201 22 0 chr4 156226106 156226245 -46102102 - Tigger3(Golem) DNA MER2_type -1 3028 2887 316 230 14 0 chr4 156226331 156226405 -46101942 + MER2 DNA MER2_type 271 345 0 24 0 0 0 chr4 156226858 156226882 -46101465 + AT_rich Low_complexity Low_complexity 1 24 0 826 251 6 0 chr4 156227377 156227548 -46100799 - MER5B DNA MER1_type -6 172 1 4773 117 12 35 chr4 156228237 156228997 -46099350 + L1PA16 LINE L1 5358 6099 -67 2182 122 42 31 chr4 156228997 156229357 -46098990 + THE1B LTR MaLR 1 364 0 4773 117 12 35 chr4 156229357 156229423 -46098924 + L1PA16 LINE L1 6099 6165 -1 245 300 149 39 chr4 156229803 156229970 -46098377 + MIR3 SINE MIR 10 188 -69 482 250 103 6 chr4 156230863 156231019 -46097328 - MIR SINE MIR 0 262 92 999 219 33 14 chr4 156231254 156231469 -46096878 + MER20 DNA MER1_type 1 219 0 1772 168 16 13 chr4 156231547 156231856 -46096491 - AluJo SINE Alu -2 310 1 207 269 0 0 chr4 156231869 156231921 -46096426 - L2 LINE L2 -1 3271 3220 193 339 0 0 chr4 156232079 156232141 -46096206 + L2 LINE L2 2980 3041 -231 271 278 28 0 chr4 156232512 156232584 -46095763 - L2 LINE L2 -8 3305 3232 2818 7 0 0 chr4 156232619 156232924 -46095423 - AluYa5 SINE Alu -6 305 1 1758 130 65 49 chr4 156234525 156234894 -46093453 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr4 156235286 156235311 -46093036 + AT_rich Low_complexity Low_complexity 1 25 0 429 239 111 8 chr4 156236177 156236294 -46092053 + MIR SINE MIR 126 254 -8 2194 111 0 3 chr4 156236878 156237184 -46091163 + AluSx SINE Alu 1 305 -7 2169 108 3 7 chr4 156238054 156238375 -46089972 - AluSq SINE Alu 0 313 1 247 254 28 14 chr4 156238581 156238652 -46089695 - L2 LINE L2 -1 3271 3200 1180 311 50 30 chr4 156238742 156239381 -46088966 - L2 LINE L2 -99 3214 2551 293 279 0 0 chr4 156241343 156241404 -46086943 + L3 LINE CR1 1516 1576 -1 304 202 167 71 chr4 156241939 156242107 -46086240 + MIR SINE MIR 32 215 -47 1740 164 11 4 chr4 156242430 156242738 -46085609 + AluSx SINE Alu 1 310 0 929 166 0 0 chr4 156243280 156243425 -46084922 + FRAM SINE Alu 20 164 -12 25 31 0 0 chr4 156243999 156244031 -46084316 + AT_rich Low_complexity Low_complexity 1 32 0 198 224 98 70 chr4 156244767 156244910 -46083437 - MIR SINE MIR -36 226 80 703 129 1 7 chr4 156246781 156246913 -46081434 - L1MD3 LINE L1 0 7984 6233 372 139 105 0 chr4 156246915 156247001 -46081346 + MER53 DNA DNA 1 95 -94 691 200 70 25 chr4 156247021 156247221 -46081126 - L1MC3 LINE L1 -120 7665 7457 30 59 0 0 chr4 156247297 156247348 -46080999 + AT_rich Low_complexity Low_complexity 1 51 0 31 26 0 0 chr4 156249422 156249460 -46078887 + AT_rich Low_complexity Low_complexity 1 38 0 431 243 88 27 chr4 156250146 156250294 -46078053 + MIR SINE MIR 89 245 -17 188 296 0 93 chr4 156251248 156251309 -46077038 + MIR SINE MIR 165 213 -49 1883 168 3 0 chr4 156251309 156251600 -46076747 - AluSx SINE Alu -20 292 1 188 296 0 93 chr4 156251600 156251646 -46076701 + MIR SINE MIR 213 262 0 848 305 86 13 chr4 156252617 156252991 -46075356 + L2 LINE L2 2912 3312 -1 380 331 37 0 chr4 156252995 156253131 -46075216 - MIR SINE MIR -120 142 2 1308 183 95 32 chr4 156254204 156254489 -46073858 - AluJb SINE Alu -9 303 1 199 186 47 0 chr4 156254562 156254605 -46073742 - L2 LINE L2 -1 3312 3268 5703 161 25 9 chr4 156254775 156256638 -46071709 - L1PA13 LINE L1 -1 6162 4218 225 197 49 0 chr4 156258748 156258809 -46069538 + (TA)n Simple_repeat Simple_repeat 2 65 0 411 284 30 47 chr4 156258845 156259014 -46069333 - MIR SINE MIR -57 205 40 638 236 124 11 chr4 156259113 156259291 -46069056 + MIR SINE MIR 65 262 0 649 214 32 19 chr4 156259308 156259462 -46068885 + L2 LINE L2 3158 3313 0 492 357 118 52 chr4 156261013 156261692 -46066655 + L2 LINE L2 2555 3272 0 198 267 233 0 chr4 156263363 156263449 -46064898 - MIR SINE MIR -56 206 101 275 407 0 0 chr4 156263716 156263824 -46064523 - L2 LINE L2 -4 3268 3161 184 273 23 0 chr4 156315391 156315435 -46012912 + L2 LINE L2 3219 3263 -9 26 0 0 0 chr4 156315591 156315617 -46012730 + AT_rich Low_complexity Low_complexity 1 26 0 504 0 0 0 chr4 156316988 156317044 -46011303 + (TA)n Simple_repeat Simple_repeat 2 57 0 482 282 0 0 chr4 156317251 156317361 -46010986 + MER81 DNA DNA 1 110 -4 442 306 21 0 chr4 156317583 156317727 -46010620 - MIR SINE MIR 0 262 116 485 176 40 74 chr4 156318393 156318569 -46009778 + L1ME4a LINE L1 5951 6120 -1 22 35 0 0 chr4 156319702 156319731 -46008616 + AT_rich Low_complexity Low_complexity 1 29 0 244 246 29 43 chr4 156321065 156321134 -46007213 + L2 LINE L2 3188 3255 -17 700 166 41 12 chr4 156321647 156321816 -46006531 + MER33 DNA MER1_type 52 225 -99 231 237 227 0 chr4 156321862 156321959 -46006388 - Charlie4 DNA MER1_type -11 1950 1832 1251 210 85 17 chr4 156322158 156322510 -46005837 - MER31A LTR ERV1 0 485 110 1417 151 4 12 chr4 156322510 156322755 -46005592 - THE1B LTR MaLR 0 364 122 2106 112 3 3 chr4 156322858 156323145 -46005202 - AluSx SINE Alu -25 287 1 696 257 69 6 chr4 156324595 156324770 -46003577 + MER5A DNA MER1_type 1 186 -3 243 0 0 0 chr4 156325149 156325176 -46003171 + (TG)n Simple_repeat Simple_repeat 2 28 0 250 324 14 0 chr4 156325849 156325920 -46002427 - L2 LINE L2 0 3313 3242 12683 131 36 67 chr4 156326101 156327223 -46001124 + Tigger1 DNA MER2_type 1 1156 -1262 2145 143 34 63 chr4 156327223 156327665 -46000682 - MSTB1 LTR MaLR 0 432 4 12683 131 36 67 chr4 156327665 156327739 -46000608 + Tigger1 DNA MER2_type 1156 1231 -1187 1592 82 0 0 chr4 156327739 156327935 -46000412 + AluY SINE Alu 99 294 -17 5479 35 11 3 chr4 156327936 156328598 -45999749 + L1PA7 LINE L1 5480 6146 -8 12683 131 36 67 chr4 156328598 156328648 -45999699 + Tigger1 DNA MER2_type 1231 1281 -1137 366 23 0 0 chr4 156328648 156328691 -45999656 + (CA)n Simple_repeat Simple_repeat 2 44 0 12683 131 36 67 chr4 156328691 156329831 -45998516 + Tigger1 DNA MER2_type 1281 2314 -104 2436 107 0 0 chr4 156329831 156330141 -45998206 - AluSx SINE Alu -2 310 1 12683 131 36 67 chr4 156330141 156330243 -45998104 + Tigger1 DNA MER2_type 2314 2418 0 24 32 0 0 chr4 156330560 156330591 -45997756 + AT_rich Low_complexity Low_complexity 1 31 0 404 337 51 67 chr4 156330629 156331258 -45997089 - L2 LINE L2 -3 3269 2655 468 343 102 34 chr4 156331315 156332043 -45996304 - L2 LINE L2 -1571 1743 967 2978 226 175 39 chr4 156332205 156333306 -45995041 - L1MC4 LINE L1 -287 7755 6492 2179 114 0 10 chr4 156333306 156333612 -45994735 - AluSg SINE Alu -7 303 1 2978 226 175 39 chr4 156333612 156333652 -45994695 - L1MC4 LINE L1 -1550 6492 6459 838 153 37 66 chr4 156336241 156336536 -45991811 + MER31B LTR ERV1 19 418 -48 1936 237 54 31 chr4 156336585 156337236 -45991111 - HsTC2c DNA Tc2 -55 674 9 460 336 60 41 chr4 156337445 156337713 -45990634 - Charlie8 DNA MER1_type -2144 273 1 203 255 0 39 chr4 156338655 156338706 -45989641 + MIR3 SINE MIR 151 199 -9 777 182 14 0 chr4 156339327 156339475 -45988872 - MLT1B LTR MaLR -50 340 191 26 30 0 0 chr4 156340006 156340039 -45988308 + AT_rich Low_complexity Low_complexity 1 33 0 249 245 85 38 chr4 156341019 156341125 -45987222 + MLT1J LTR MaLR 226 336 -175 337 267 61 55 chr4 156341371 156341536 -45986811 - MER103 DNA DNA 0 166 1 582 303 56 8 chr4 156342873 156343107 -45985240 + L2 LINE L2 2445 2689 -625 518 336 138 21 chr4 156343202 156343586 -45984761 + L2 LINE L2 2885 3313 0 2548 40 0 10 chr4 156344946 156345242 -45983105 - AluY SINE Alu -18 293 1 341 161 32 0 chr4 156346452 156346514 -45981833 + MIR SINE MIR 120 183 -79 214 326 89 15 chr4 156346673 156346808 -45981539 - L2 LINE L2 -37 3276 3132 295 302 124 47 chr4 156346906 156347270 -45981077 - L2 LINE L2 -353 2961 2570 226 214 0 0 chr4 156347475 156347517 -45980830 + GA-rich Low_complexity Low_complexity 4 45 0 2268 99 3 19 chr4 156349604 156349917 -45978430 + AluSg SINE Alu 1 308 -2 260 401 82 0 chr4 156352990 156353137 -45975210 - L2 LINE L2 -4 3268 3110 312 179 15 15 chr4 156353433 156353500 -45974847 - MIR SINE MIR -109 153 87 224 93 0 93 chr4 156353595 156353649 -45974698 + (CA)n Simple_repeat Simple_repeat 2 50 0 2565 60 0 0 chr4 156355263 156355565 -45972782 - AluY SINE Alu -4 307 6 230 257 57 0 chr4 156355737 156355807 -45972540 + MIR SINE MIR 130 203 -59 226 215 215 54 chr4 156357214 156357363 -45970984 - MLT1J LTR MaLR -338 173 1 244 294 22 22 chr4 156358411 156358503 -45969844 - L2 LINE L2 -8 3264 3173 1201 162 19 29 chr4 156358519 156358729 -45969618 + MER20 DNA MER1_type 12 219 0 544 317 40 18 chr4 156359231 156359458 -45968889 - MIR SINE MIR -13 249 18 469 68 17 0 chr4 156359716 156359775 -45968572 + Alu SINE Alu 2 61 -257 2396 224 33 74 chr4 156359889 156360554 -45967793 - MER21B LTR ERV1 -225 638 1 248 327 188 40 chr4 156361285 156361339 -45967008 - L2 LINE L2 -2809 505 460 1985 133 57 21 chr4 156361339 156361670 -45966677 - MER61A LTR ERV1 0 343 1 248 327 188 40 chr4 156361670 156361859 -45966488 - L2 LINE L2 -2854 460 300 2631 183 24 17 chr4 156361859 156362323 -45966024 - MLT1C LTR MaLR 0 467 1 248 327 188 40 chr4 156362323 156362430 -45965917 - L2 LINE L2 -3014 300 102 205 248 48 105 chr4 156362530 156362635 -45965712 - MER91C DNA MER1_type -32 108 10 233 140 18 35 chr4 156362833 156362890 -45965457 + (TAAA)n Simple_repeat Simple_repeat 4 59 0 386 338 138 13 chr4 156363491 156363722 -45964625 - MLT1L LTR MaLR -5 610 351 261 292 56 0 chr4 156363726 156363798 -45964549 - L2 LINE L2 0 3313 3238 687 304 102 24 chr4 156363867 156364022 -45964325 - L2 LINE L2 -83 3230 3089 1985 160 0 3 chr4 156364022 156364335 -45964012 - AluJb SINE Alu 0 312 1 687 304 102 24 chr4 156364335 156364687 -45963660 - L2 LINE L2 -224 3089 2690 347 319 101 0 chr4 156364739 156364877 -45963470 + L2 LINE L2 2532 2683 -631 2211 166 81 13 chr4 156364930 156365377 -45962970 + LTR22 LTR ERVK 1 477 -32 21 57 0 0 chr4 156365845 156365880 -45962467 + AT_rich Low_complexity Low_complexity 1 35 0 996 199 0 0 chr4 156368576 156368752 -45959595 + AluJb SINE Alu 137 312 0 407 287 110 12 chr4 156368859 156369023 -45959324 + MLT1H LTR MaLR 370 549 0 838 124 16 0 chr4 156369604 156369733 -45958614 - L1PB1 LINE L1 -2 6149 6019 26 30 0 0 chr4 156369733 156369766 -45958581 + AT_rich Low_complexity Low_complexity 1 33 0 240 236 0 0 chr4 156370395 156370450 -45957897 - L1MC4 LINE L1 -1339 6703 6649 300 333 0 0 chr4 156370491 156370665 -45957682 + (CA)n Simple_repeat Simple_repeat 2 175 0 244 193 0 0 chr4 156370705 156370762 -45957585 + L1MC3 LINE L1 6589 6645 -1140 235 333 0 0 chr4 156370709 156370799 -45957548 - L1MC4 LINE L1 -1339 6703 6614 * 257 237 0 26 chr4 156370806 156370882 -45957465 + L1MC3 LINE L1 6572 6645 -1140 282 267 0 0 chr4 156370886 156370976 -45957371 + (TA)n Simple_repeat Simple_repeat 1 90 0 242 194 14 0 chr4 156370975 156371047 -45957300 + GA-rich Low_complexity Low_complexity 2 74 0 * 370 233 17 35 chr4 156371566 156371682 -45956665 + MER5B DNA MER1_type 26 139 -39 6477 102 4 9 chr4 156372161 156373298 -45955049 + L1PB1 LINE L1 5009 6151 0 23 0 0 0 chr4 156373301 156373324 -45955023 + AT_rich Low_complexity Low_complexity 1 23 0 439 208 99 0 chr4 156374771 156374872 -45953475 - MIR SINE MIR -26 236 126 257 246 18 0 chr4 156375022 156375079 -45953268 - L2 LINE L2 -6 3307 3250 2349 116 0 0 chr4 156375284 156375586 -45952761 - AluSq SINE Alu -11 302 1 834 191 0 45 chr4 156375978 156376156 -45952191 + FRAM SINE Alu 1 167 -9 2332 115 0 0 chr4 156377143 156377514 -45950833 + AluSx SINE Alu 1 371 0 274 253 50 44 chr4 156377808 156377990 -45950357 - L1ME4a LINE L1 -6 6115 5933 9801 159 3 2 chr4 156380427 156382917 -45945430 + L1PA13 LINE L1 3667 6163 0 981 249 114 82 chr4 156383021 156383739 -45944608 + MER20B DNA MER1_type 1 746 -37 1584 146 56 7 chr4 156383739 156384027 -45944320 + L1MA8 LINE L1 5985 6286 -5 981 249 114 82 chr4 156384027 156384064 -45944283 + MER20B DNA MER1_type 746 780 -3 287 327 142 33 chr4 156384115 156384326 -45944021 - MIR SINE MIR -16 246 13 276 122 20 0 chr4 156384923 156384972 -45943375 - MADE1 DNA Mariner 0 80 31 2123 116 11 0 chr4 156384972 156385257 -45943090 + AluSq SINE Alu 1 288 -25 228 163 0 0 chr4 156385267 156385310 -45943037 + GA-rich Low_complexity Low_complexity 2 44 0 249 116 0 0 chr4 156385310 156385353 -45942994 - MADE1 DNA Mariner -37 43 1 300 203 70 62 chr4 156385365 156385493 -45942854 - MIR SINE MIR -89 173 45 2123 143 0 0 chr4 156386345 156386652 -45941695 + AluSq SINE Alu 1 307 -6 20302 116 9 19 chr4 156386827 156389767 -45938580 + L1P LINE L1 11 2922 -3224 2371 100 3 0 chr4 156389767 156390076 -45938271 + AluY SINE Alu 1 310 -1 20302 116 9 19 chr4 156390076 156390193 -45938154 + L1P LINE L1 2922 3039 -3107 6626 42 10 11 chr4 156390164 156390730 -45937617 + L1PA6 LINE L1 4925 5490 -664 * 2345 93 0 3 chr4 156390730 156391030 -45937317 + AluY SINE Alu 1 299 -12 6626 42 10 11 chr4 156391030 156391694 -45936653 + L1PA6 LINE L1 5490 6154 0 317 289 69 35 chr4 156391772 156391945 -45936402 - MIR SINE MIR -64 198 20 29 28 0 0 chr4 156393049 156393085 -45935262 + AT_rich Low_complexity Low_complexity 1 36 0 3562 134 31 3 chr4 156395491 156396073 -45932274 + L1MA7 LINE L1 5457 6054 -237 760 159 7 43 chr4 156397071 156397209 -45931138 + FLAM_C SINE Alu 1 133 0 198 103 0 0 chr4 156398619 156398648 -45929699 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 198 231 0 0 chr4 156398652 156398691 -45929656 - MIR SINE MIR -11 251 213 * 1754 268 97 48 chr4 156398688 156399706 -45928641 + L2 LINE L2 2245 3313 0 188 362 0 0 chr4 156399706 156399753 -45928594 - L2 LINE L2 -75 3197 3151 538 261 22 14 chr4 156400184 156400322 -45928025 - MIR SINE MIR -78 184 46 183 343 10 59 chr4 156400372 156400474 -45927873 - MIR3 SINE MIR -15 193 97 715 298 30 18 chr4 156400478 156400734 -45927613 + MIR SINE MIR 3 260 -2 239 237 9 53 chr4 156400737 156400851 -45927496 + (TTA)n Simple_repeat Simple_repeat 3 111 0 640 272 19 44 chr4 156401791 156402057 -45926290 - L1M1 LINE L1 -297 5824 5594 683 275 7 0 chr4 156403102 156403251 -45925096 - MIR SINE MIR -112 150 1 311 301 4 46 chr4 156403273 156403400 -45924947 + MIR SINE MIR 30 150 -77 2045 139 10 0 chr4 156404031 156404325 -45924022 - AluSx SINE Alu -15 297 1 1786 206 44 16 chr4 156404999 156405495 -45922852 + MER69 DNA AcHobo 2010 2519 -7 357 299 75 8 chr4 156406257 156406391 -45921956 + MIR SINE MIR 46 188 -74 220 277 72 36 chr4 156409803 156409886 -45918461 + MER91C DNA MER1_type 34 119 -21 2501 73 0 10 chr4 156409953 156410267 -45918080 - AluY SINE Alu 0 311 1 300 331 54 8 chr4 156410896 156411026 -45917321 - MIR SINE MIR -28 234 99 23 68 0 0 chr4 156411075 156411119 -45917228 + AT_rich Low_complexity Low_complexity 1 44 0 26 74 0 0 chr4 156412630 156412684 -45915663 + AT_rich Low_complexity Low_complexity 1 54 0 25 0 0 0 chr4 156413386 156413411 -45914936 + AT_rich Low_complexity Low_complexity 1 25 0 310 353 43 22 chr4 156413832 156414016 -45914331 + MLT1J2 LTR MaLR 9 196 -254 317 238 12 12 chr4 156414078 156414162 -45914185 + MLT1I LTR MaLR 325 408 -1 560 266 0 29 chr4 156415352 156415491 -45912856 + MIR3 SINE MIR 22 156 -52 1046 266 35 22 chr4 156415496 156415808 -45912539 - MER102b DNA MER1_type -1 340 25 203 243 0 0 chr4 156415847 156415884 -45912463 + MIR3 SINE MIR 151 187 -21 546 293 146 32 chr4 156416010 156416594 -45911753 + L2 LINE L2 1850 2499 -815 323 350 8 17 chr4 156416913 156417030 -45911317 + L2 LINE L2 2955 3070 -202 822 277 62 40 chr4 156417080 156417582 -45910765 - L1M4 LINE L1 -1067 5079 4567 1423 238 106 35 chr4 156417649 156418455 -45909892 - L1MCa LINE L1 -3035 3906 3044 324 214 0 0 chr4 156418681 156418737 -45909610 - MER2 DNA MER2_type 0 345 290 2851 125 4 26 chr4 156418795 156419251 -45909096 - Tigger2 DNA MER2_type 0 2718 2273 506 114 0 0 chr4 156419240 156419310 -45909037 - Tigger2 DNA MER2_type -2648 70 1 * 259 313 0 10 chr4 156420017 156420113 -45908234 + (TA)n Simple_repeat Simple_repeat 2 96 0 273 29 0 0 chr4 156420113 156420147 -45908200 + (TG)n Simple_repeat Simple_repeat 1 34 0 1324 254 89 17 chr4 156422075 156422662 -45905685 - L1MCa LINE L1 -4109 3013 2385 25 31 0 0 chr4 156422662 156422694 -45905653 + AT_rich Low_complexity Low_complexity 1 32 0 14472 174 16 3 chr4 156422739 156423282 -45905065 - L1PA14 LINE L1 -4 6157 5623 2054 136 0 16 chr4 156423282 156423592 -45904755 - AluSx SINE Alu -7 305 1 14472 174 16 3 chr4 156423592 156426554 -45901793 - L1PA14 LINE L1 -538 5623 2487 1323 250 173 52 chr4 156426549 156426936 -45901411 - L1MCa LINE L1 -5626 797 458 * 2012 169 19 11 chr4 156426936 156427296 -45901051 + MLT1A1 LTR MaLR 1 363 -2 1323 250 173 52 chr4 156427296 156427622 -45900725 - L1MCa LINE L1 -5965 458 13 1521 201 21 21 chr4 156428669 156428958 -45899389 + AluJo SINE Alu 1 289 -23 21 107 0 0 chr4 156429606 156429690 -45898657 + AT_rich Low_complexity Low_complexity 1 84 0 38 89 0 0 chr4 156429709 156429810 -45898537 + AT_rich Low_complexity Low_complexity 1 101 0 181 105 93 0 chr4 156429812 156429898 -45898449 + (TA)n Simple_repeat Simple_repeat 1 94 0 24 32 0 0 chr4 156429909 156429940 -45898407 + AT_rich Low_complexity Low_complexity 1 31 0 280 271 122 0 chr4 156430333 156430440 -45897907 - L2 LINE L2 -2 3311 3192 180 329 0 41 chr4 156430500 156430573 -45897774 - MIR SINE MIR 0 262 193 235 186 124 103 chr4 156433001 156433098 -45895249 + MER109 Unknown Unknown 1714 1812 -620 24 32 0 0 chr4 156433522 156433553 -45894794 + AT_rich Low_complexity Low_complexity 1 31 0 275 49 24 0 chr4 156434761 156434802 -45893545 + (TC)n Simple_repeat Simple_repeat 1 42 0 186 349 74 23 chr4 156435168 156435343 -45893004 - MIR SINE MIR -33 229 46 2728 55 6 0 chr4 156435984 156436330 -45892017 + L1PA8 LINE L1 5823 6170 -2 2369 95 0 13 chr4 156438653 156438969 -45889378 - AluSq SINE Alu -1 312 1 557 334 108 23 chr4 156439025 156439453 -45888894 + MLT1K LTR MaLR 106 569 -19 406 285 49 16 chr4 156439736 156439859 -45888488 - MIR3 SINE MIR -10 198 72 2732 32 0 0 chr4 156441352 156441663 -45886684 - AluYb8 SINE Alu -7 311 1 238 276 0 26 chr4 156442486 156442562 -45885785 + CT-rich Low_complexity Low_complexity 5 78 0 2462 176 4 25 chr4 156444419 156444890 -45883457 + MER44D DNA MER2_type 59 574 -31 21 0 0 0 chr4 156445579 156445600 -45882747 + AT_rich Low_complexity Low_complexity 1 21 0 258 298 16 16 chr4 156450007 156450128 -45878219 - MER103 DNA DNA 0 166 46 378 318 74 37 chr4 156450228 156450527 -45877820 - L1M4 LINE L1 -1338 4808 4499 22 80 0 0 chr4 156450766 156450816 -45877531 + AT_rich Low_complexity Low_complexity 1 50 0 24 53 0 0 chr4 156451077 156451115 -45877232 + AT_rich Low_complexity Low_complexity 1 38 0 2425 54 0 17 chr4 156451415 156451713 -45876634 + AluY SINE Alu 1 293 -18 1191 112 0 0 chr4 156451713 156451892 -45876455 + (TA)n Simple_repeat Simple_repeat 2 180 0 360 320 19 13 chr4 156452107 156452263 -45876084 + MER103 DNA DNA 10 166 0 180 337 31 61 chr4 156454692 156454790 -45873557 - L2 LINE L2 -2 3270 3176 200 279 33 16 chr4 156454816 156454877 -45873470 + L2 LINE L2 3241 3302 -11 538 299 140 5 chr4 156456001 156456222 -45872125 + MIR SINE MIR 9 259 -3 26 64 0 0 chr4 156456266 156456313 -45872034 + AT_rich Low_complexity Low_complexity 1 47 0 2306 67 0 3 chr4 156456313 156456598 -45871749 + AluY SINE Alu 1 284 -27 252 0 0 0 chr4 156456598 156456626 -45871721 + (TA)n Simple_repeat Simple_repeat 2 29 0 210 162 0 0 chr4 156458236 156458273 -45870074 + A-rich Low_complexity Low_complexity 1 37 0 338 361 26 26 chr4 156458504 156458698 -45869649 + L1ME LINE L1 5582 5775 -346 280 255 153 20 chr4 156459566 156459664 -45868683 + MER5B DNA MER1_type 32 142 -36 627 235 0 0 chr4 156460239 156460354 -45867993 - L2 LINE L2 0 3313 3199 192 333 15 0 chr4 156460578 156460644 -45867703 - L2 LINE L2 0 3313 3247 3692 132 30 5 chr4 156461295 156461885 -45866462 + MER6A DNA MER2_type 1 605 0 694 255 0 0 chr4 156461889 156462030 -45866317 + MER82 DNA MER2_type 1 141 -512 1878 104 4 19 chr4 156462706 156463030 -45865317 - AluSp SINE Alu 0 340 21 22 0 0 0 chr4 156463043 156463065 -45865282 + AT_rich Low_complexity Low_complexity 1 22 0 2271 100 7 3 chr4 156463583 156463892 -45864455 + AluY SINE Alu 1 310 -1 461 248 23 15 chr4 156465681 156465814 -45862533 - MER94 DNA DNA 0 134 1 1541 184 39 0 chr4 156465968 156466251 -45862096 + L1MB3 LINE L1 5684 5977 -194 2197 31 0 0 chr4 156466252 156466511 -45861836 + L1PA4 LINE L1 5889 6147 -8 1060 188 0 9 chr4 156466525 156466749 -45861598 + L1MB3 LINE L1 5959 6180 -3 195 100 0 0 chr4 156467908 156467938 -45860409 + (A)n Simple_repeat Simple_repeat 1 30 0 1992 75 58 14 chr4 156467939 156468232 -45860115 + L1PA8 LINE L1 5867 6172 0 304 150 0 0 chr4 156468249 156468309 -45860038 + L1MA4 LINE L1 6241 6300 0 864 202 45 5 chr4 156469662 156469928 -45858419 - MLT1A1 LTR MaLR -42 323 1 381 282 56 49 chr4 156470252 156470557 -45857790 - L1ME4a LINE L1 -9 6112 5806 312 319 72 12 chr4 156470571 156470737 -45857610 - L1ME4a LINE L1 -206 5915 5740 220 133 22 0 chr4 156471819 156471864 -45856483 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 662 302 18 21 chr4 156472117 156472402 -45855945 - L1ME4a LINE L1 -320 5801 5518 503 304 97 44 chr4 156475708 156475777 -45852570 + MIR SINE MIR 17 81 -181 2673 148 97 14 chr4 156475777 156476292 -45852055 + MER74A LTR ERVL 1 558 0 503 304 97 44 chr4 156476292 156476449 -45851898 + MIR SINE MIR 81 255 -7 216 315 108 39 chr4 156476451 156476581 -45851766 - MIR SINE MIR -117 145 7 2055 142 0 0 chr4 156476714 156477016 -45851331 + AluSx SINE Alu 1 302 -10 352 199 29 15 chr4 156477049 156477185 -45851162 + GA-rich Low_complexity Low_complexity 3 140 0 543 258 124 21 chr4 156477755 156477988 -45850359 - MER102a DNA MER1_type 0 330 74 1254 222 116 19 chr4 156479190 156479551 -45848796 + MSTD LTR MaLR 1 396 0 5635 230 69 52 chr4 156479982 156482478 -45845869 + L1M4 LINE L1 1 2674 -4151 871 196 39 0 chr4 156482479 156482808 -45845539 + L1MB7 LINE L1 5786 6162 -22 604 324 80 86 chr4 156483453 156483990 -45844357 - L2 LINE L2 -420 2894 2361 31629 67 111 48 chr4 156485057 156490252 -45838095 + L1P2 LINE L1 1 5540 -615 207 105 26 0 chr4 156490673 156490711 -45837636 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1684 206 39 59 chr4 156491583 156492092 -45836255 + MLT1D LTR MaLR 3 501 -4 645 209 14 14 chr4 156491955 156492094 -45836253 + MLT1D LTR MaLR 365 503 -2 440 344 105 44 chr4 156492943 156493371 -45834976 + HAL1b LINE L1 70 523 -825 1548 168 11 102 chr4 156493587 156493968 -45834379 + MER7A DNA MER2_type 1 344 -2 660 267 123 33 chr4 156495065 156495225 -45833122 + L1ME4a LINE L1 5296 5440 -681 1708 158 48 61 chr4 156495225 156495618 -45832729 + MLT1B LTR MaLR 1 388 -2 660 267 123 33 chr4 156495618 156496049 -45832298 + L1ME4a LINE L1 5440 5937 -184 24 32 0 0 chr4 156496133 156496164 -45832183 + AT_rich Low_complexity Low_complexity 1 31 0 1305 182 126 11 chr4 156496339 156496608 -45831739 + AluJo SINE Alu 1 300 -2 387 347 16 16 chr4 156497058 156497248 -45831099 + L1M4 LINE L1 3468 3657 -2987 2899 271 131 19 chr4 156498100 156499296 -45829051 + L2 LINE L2 1542 2871 -443 220 296 6 123 chr4 156499458 156499620 -45828727 - MIR3 SINE MIR -63 145 3 30440 113 11 54 chr4 156499815 156506227 -45822120 + L1PA7 LINE L1 13 6144 -10 5317 85 5 5 chr4 156507034 156508120 -45820227 - L1P3 LINE L1 -475 5679 4594 284 239 132 36 chr4 156508333 156508500 -45819847 + HAL1b LINE L1 257 439 -909 237 272 40 76 chr4 156508574 156508767 -45819580 - L1M4 LINE L1 -3106 3040 2867 1892 137 11 0 chr4 156508767 156509051 -45819296 - AluSx SINE Alu -15 297 11 237 272 40 76 chr4 156509051 156509254 -45819093 - L1M4 LINE L1 -3279 2867 2658 454 289 74 0 chr4 156509431 156509580 -45818767 - L1MD1 LINE L1 -154 6482 6323 486 144 44 33 chr4 156509734 156509824 -45818523 + AluSp/q SINE Alu 206 296 -17 346 195 39 0 chr4 156509824 156509901 -45818446 - L1MD1 LINE L1 -309 6327 6248 * 1385 224 114 25 chr4 156509899 156510425 -45817922 - L1MD1 LINE L1 -1153 5387 4815 243 211 33 0 chr4 156510428 156510518 -45817829 + (TA)n Simple_repeat Simple_repeat 2 94 0 1014 217 0 28 chr4 156510527 156510776 -45817571 - L1MB8 LINE L1 -9 6169 5928 5850 223 107 39 chr4 156510779 156513954 -45814393 - L1MD1 LINE L1 -2274 4266 846 1542 249 86 41 chr4 156513950 156514483 -45813864 - L1MD1 LINE L1 -5941 599 43 * 9071 215 59 63 chr4 156514517 156517103 -45811244 - L1MA8 LINE L1 -2 7249 4654 1517 130 12 4 chr4 156517103 156517349 -45810998 - L1PB2 LINE L1 -8 6143 5896 9071 215 59 63 chr4 156517349 156522385 -45805962 - L1MA8 LINE L1 -2597 4654 1 26 0 0 0 chr4 156522391 156522417 -45805930 + AT_rich Low_complexity Low_complexity 1 26 0 1835 167 25 33 chr4 156523107 156523466 -45804881 - MLT1A1 LTR MaLR 0 365 10 212 238 0 24 chr4 156523470 156523512 -45804835 + MIR SINE MIR 201 241 -21 353 310 124 10 chr4 156524595 156524885 -45803462 - L1ME4a LINE L1 -241 5880 5558 186 299 104 0 chr4 156525269 156525346 -45803001 - L2 LINE L2 -12 3260 3176 333 342 46 46 chr4 156525369 156525606 -45802741 + L1ME4a LINE L1 5398 5634 -2174 243 226 164 20 chr4 156525648 156525794 -45802553 + L1ME4a LINE L1 5954 6120 -1 661 326 56 52 chr4 156525840 156526266 -45802081 + L1M2a LINE L1 13 440 -6728 847 271 47 91 chr4 156526745 156527251 -45801096 + L1M2a LINE L1 1578 2061 -5107 * 2622 225 70 3 chr4 156527247 156528016 -45800331 + L1M2a LINE L1 3870 4690 -2477 3751 64 0 4 chr4 156528150 156528637 -45799710 + L1PA7 LINE L1 5670 6154 0 303 302 111 0 chr4 156528742 156528868 -45799479 + L1ME4a LINE L1 5978 6117 -4 1004 98 0 0 chr4 156528929 156529062 -45799285 + AluSq/x SINE Alu 1 133 -179 23 68 0 0 chr4 156529932 156529976 -45798371 + AT_rich Low_complexity Low_complexity 1 44 0 263 333 65 9 chr4 156531023 156531131 -45797216 - L2 LINE L2 -14 3299 3186 201 265 132 15 chr4 156531184 156531252 -45797095 + MIR3 SINE MIR 111 186 -22 198 288 30 30 chr4 156531560 156531626 -45796721 + L3 LINE CR1 1505 1570 -7 672 220 11 88 chr4 156532091 156532273 -45796074 - MER5A DNA MER1_type -2 187 20 897 203 6 16 chr4 156532300 156532482 -45795865 - MER5A DNA MER1_type 0 189 10 239 209 0 0 chr4 156533995 156534038 -45794309 + MER94 DNA DNA 1 43 -91 1547 282 107 41 chr4 156534124 156535738 -45792609 - HAL1 LINE L1 -60 2447 701 1852 129 11 4 chr4 156536364 156536658 -45791689 - AluSx SINE Alu 0 310 15 6961 60 5 1 chr4 156536891 156537944 -45790403 + L1PA7 LINE L1 5098 6153 -1 275 200 0 0 chr4 156539036 156539086 -45789261 - MER5A DNA MER1_type -128 61 12 213 262 0 0 chr4 156540155 156540197 -45788150 - L2 LINE L2 -11 3261 3220 1107 266 76 20 chr4 156541334 156541740 -45786607 + L2 LINE L2 2885 3313 0 271 316 90 45 chr4 156543185 156543318 -45785029 + MER5A DNA MER1_type 48 186 -3 645 251 53 18 chr4 156543325 156543496 -45784851 - MER5B DNA MER1_type -1 177 1 620 222 105 0 chr4 156543935 156544106 -45784241 - MIR SINE MIR -1 261 73 253 309 32 11 chr4 156546230 156546324 -45782023 - MIR3 SINE MIR -25 183 88 22 0 0 0 chr4 156548469 156548491 -45779856 + AT_rich Low_complexity Low_complexity 1 22 0 398 234 292 31 chr4 156549383 156549575 -45778772 + MIR SINE MIR 21 262 0 523 243 216 7 chr4 156549695 156549843 -45778504 + MER5A DNA MER1_type 11 189 0 737 345 130 31 chr4 156549883 156550620 -45777727 + L2 LINE L2 231 1040 -2274 291 293 49 76 chr4 156550685 156550948 -45777399 + L2 LINE L2 1484 1739 -1575 1187 139 0 0 chr4 156551141 156551307 -45777040 - FRAM SINE Alu -15 161 1 2592 113 30 44 chr4 156552545 156553004 -45775343 + L1PA16 LINE L1 5707 6159 -7 21 0 0 0 chr4 156553361 156553382 -45774965 + AT_rich Low_complexity Low_complexity 1 21 0 58 54 0 0 chr4 156555409 156555502 -45772845 + AT_rich Low_complexity Low_complexity 1 93 0 28 29 0 0 chr4 156556115 156556150 -45772197 + AT_rich Low_complexity Low_complexity 1 35 0 6070 140 34 5 chr4 156558155 156559240 -45769107 + Tigger3b DNA MER2_type 2 1118 -113 1440 150 0 4 chr4 156559340 156559574 -45768773 + Tigger3(Golem) DNA MER2_type 2795 3027 -2 803 239 93 38 chr4 156559628 156559917 -45768430 - MER5C DNA MER1_type -6 318 14 2229 108 0 25 chr4 156560119 156560433 -45767914 + AluSg SINE Alu 1 306 -4 252 122 0 0 chr4 156560755 156560796 -45767551 + (TC)n Simple_repeat Simple_repeat 2 42 0 210 37 0 0 chr4 156560798 156560825 -45767522 + (CA)n Simple_repeat Simple_repeat 1 27 0 221 341 24 48 chr4 156560854 156560980 -45767367 + MIR SINE MIR 6 128 -134 206 342 126 0 chr4 156562715 156562826 -45765521 + MIR3 SINE MIR 38 162 -46 302 213 107 0 chr4 156563390 156563465 -45764882 - L1ME4a LINE L1 -199 5922 5840 258 32 0 0 chr4 156563504 156563535 -45764812 + (TA)n Simple_repeat Simple_repeat 1 31 0 199 388 71 27 chr4 156564565 156564789 -45763558 + L3b LINE CR1 1325 1558 -25 204 340 13 73 chr4 156566125 156566275 -45762072 + MER5A DNA MER1_type 38 189 0 421 139 23 47 chr4 156566830 156566916 -45761431 + L2 LINE L2 3230 3313 0 203 200 0 0 chr4 156567590 156567625 -45760722 + T-rich Low_complexity Low_complexity 2 36 0 326 339 158 48 chr4 156567814 156568206 -45760141 - L2 LINE L2 -1 3271 2837 416 275 39 46 chr4 156568370 156568654 -45759693 - LTR16C LTR ERVL 0 491 210 562 274 44 73 chr4 156569063 156569160 -45759187 - MIR SINE MIR -21 241 143 2079 229 38 26 chr4 156569160 156569692 -45758655 - MLT1F LTR MaLR -4 538 1 562 274 44 73 chr4 156569692 156569788 -45758559 - MIR SINE MIR -119 143 54 2302 90 0 0 chr4 156569788 156570078 -45758269 + AluSc SINE Alu 1 290 -19 562 274 44 73 chr4 156570078 156570131 -45758216 - MIR SINE MIR -208 54 1 489 337 146 16 chr4 156572312 156572817 -45755530 + L2 LINE L2 2728 3293 -20 2342 67 3 13 chr4 156572827 156573141 -45755206 + AluY SINE Alu 1 311 0 2041 9 0 0 chr4 156573253 156573479 -45754868 + AluYa5 SINE Alu 1 226 -85 5618 189 46 20 chr4 156573579 156574957 -45753390 + L1MA9 LINE L1 3630 5044 -1102 3504 170 160 19 chr4 156574966 156575885 -45752462 + L1MA9 LINE L1 5254 6302 -10 490 238 189 0 chr4 156577355 156577498 -45750849 + MER5A DNA MER1_type 9 178 -11 * 650 253 78 6 chr4 156577489 156577655 -45750692 - MER5A DNA MER1_type -9 180 3 800 218 56 0 chr4 156580129 156580308 -45748039 + MER5A DNA MER1_type 1 189 0 186 71 0 0 chr4 156580882 156580910 -45747437 + (TTGG)n Simple_repeat Simple_repeat 1 28 0 1585 199 161 31 chr4 156581303 156581488 -45746859 - MLT1F1 LTR MaLR -3 564 404 1709 145 4 0 chr4 156581488 156581759 -45746588 + AluSx SINE Alu 33 304 0 1585 199 161 31 chr4 156581759 156582049 -45746298 - MLT1F1 LTR MaLR -163 404 26 2173 124 3 3 chr4 156582090 156582389 -45745958 + AluSx SINE Alu 1 299 -13 619 172 180 16 chr4 156582542 156582759 -45745588 + L1MDa LINE L1 2350 2617 -3923 234 0 0 0 chr4 156582759 156582785 -45745562 + (CA)n Simple_repeat Simple_repeat 2 27 0 619 172 180 16 chr4 156582785 156582823 -45745524 + L1MDa LINE L1 2617 2647 -3893 2085 183 22 53 chr4 156582829 156583375 -45744972 + L1MD2 LINE L1 5593 6121 -238 898 153 25 85 chr4 156583434 156583670 -45744677 + L1MD2 LINE L1 6137 6358 -1 28931 118 15 69 chr4 156584562 156590220 -45738127 + L1P LINE L1 12 5366 -780 1254 181 13 10 chr4 156590566 156590876 -45737471 + AluYa5 SINE Alu 1 311 0 212 244 0 0 chr4 156592142 156592187 -45736160 + (CATA)n Simple_repeat Simple_repeat 3 47 0 457 115 26 0 chr4 156592193 156592271 -45736076 - MADE1 DNA Mariner 0 80 1 1139 255 64 40 chr4 156592313 156592831 -45735516 + MLT1H LTR MaLR 5 534 -15 2154 106 63 29 chr4 156593239 156593588 -45734759 + THE1B LTR MaLR 4 364 0 443 291 271 23 chr4 156593779 156594023 -45734324 - L2 LINE L2 -634 2680 2498 432 0 0 0 chr4 156594023 156594071 -45734276 + (TG)n Simple_repeat Simple_repeat 2 49 0 443 291 271 23 chr4 156594071 156594180 -45734167 - L2 LINE L2 -816 2498 2239 * 690 301 144 12 chr4 156594179 156594518 -45733829 - L2 LINE L2 -440 2874 2491 214 328 0 0 chr4 156594574 156594638 -45733709 - L2 LINE L2 -2465 849 786 6705 127 52 12 chr4 156594875 156595449 -45732898 + Tigger3b DNA MER2_type 1 550 -2478 3287 91 11 2 chr4 156595449 156595898 -45732449 - MLT2A2 LTR ERVL 0 453 1 6705 127 52 12 chr4 156595898 156596506 -45731841 + Tigger3b DNA MER2_type 550 1231 0 2344 102 3 0 chr4 156597089 156597393 -45730954 + AluSp SINE Alu 1 305 -8 510 297 14 7 chr4 156597397 156597542 -45730805 - MER5A DNA MER1_type -43 146 1 593 215 17 12 chr4 156597734 156597981 -45730366 + GA-rich Low_complexity Low_complexity 1 248 0 1148 86 29 19 chr4 156597981 156598346 -45730001 + (GAAA)n Simple_repeat Simple_repeat 1 368 0 433 161 37 37 chr4 156598358 156598519 -45729828 + GA-rich Low_complexity Low_complexity 2 162 0 1971 255 105 70 chr4 156598867 156599215 -45729132 - HAL1 LINE L1 -52 2455 2121 1940 174 8 14 chr4 156599215 156599582 -45728765 - MLT1A1 LTR MaLR 0 365 1 1971 255 105 70 chr4 156599582 156600476 -45727871 - HAL1 LINE L1 -386 2121 1137 725 203 0 8 chr4 156600476 156600604 -45727743 + FLAM_A SINE Alu 2 128 -5 1971 255 105 70 chr4 156600604 156601012 -45727335 - HAL1 LINE L1 -1370 1137 745 243 282 39 13 chr4 156601073 156601151 -45727196 - HAL1 LINE L1 -1887 620 541 22 0 0 0 chr4 156604517 156604539 -45723808 + AT_rich Low_complexity Low_complexity 1 22 0 309 82 0 0 chr4 156604735 156604784 -45723563 + (TCTCCC)n Simple_repeat Simple_repeat 1 49 0 6956 65 17 24 chr4 156604796 156606465 -45721882 + SVA Other Other 2 1385 -1 1246 168 7 64 chr4 156606491 156606789 -45721558 + L1MB8 LINE L1 5880 6160 -18 2407 121 16 11 chr4 156606790 156607163 -45721184 - THE1C LTR MaLR 0 375 1 409 292 13 29 chr4 156608541 156608694 -45719653 - MIR3 SINE MIR -36 172 21 502 235 262 0 chr4 156609970 156610119 -45718228 + MER5A DNA MER1_type 2 189 0 1277 240 93 20 chr4 156611450 156611987 -45716360 + HAL1 LINE L1 1088 1663 -844 617 232 71 98 chr4 156612022 156612237 -45716110 + HAL1 LINE L1 1998 2217 -290 390 74 0 0 chr4 156612237 156612291 -45716056 + (TG)n Simple_repeat Simple_repeat 2 55 0 617 232 71 98 chr4 156612291 156612409 -45715938 + HAL1 LINE L1 2217 2337 -170 1464 149 165 0 chr4 156612409 156612678 -45715669 + AluSx SINE Alu 3 311 0 617 232 71 98 chr4 156612678 156612864 -45715483 + HAL1 LINE L1 2337 2505 -2 742 285 41 5 chr4 156612905 156613126 -45715221 + MIR SINE MIR 14 242 -20 1112 283 54 70 chr4 156613131 156613892 -45714455 - L2 LINE L2 -5 3308 2564 198 286 0 0 chr4 156613938 156613980 -45714367 - MIR SINE MIR -107 101 60 198 311 143 34 chr4 156614968 156615087 -45713260 - L2 LINE L2 -652 2662 2531 391 286 17 0 chr4 156615605 156615724 -45712623 - MIR SINE MIR -70 192 72 207 0 0 0 chr4 156616994 156617017 -45711330 + (CA)n Simple_repeat Simple_repeat 2 24 0 318 389 50 0 chr4 156617164 156617385 -45710962 - L1MC/D LINE L1 -2202 5606 5375 21 0 0 0 chr4 156617494 156617515 -45710832 + AT_rich Low_complexity Low_complexity 1 21 0 1919 152 3 14 chr4 156617545 156617842 -45710505 - AluJo SINE Alu -18 294 1 2148 151 12 0 chr4 156618580 156618924 -45709423 - MER7A DNA MER2_type 0 346 1 1689 189 30 0 chr4 156619216 156619587 -45708760 - L1MC3 LINE L1 0 7785 7404 495 224 75 7 chr4 156619588 156619735 -45708612 + MLT1B LTR MaLR 4 160 -230 894 148 85 17 chr4 156619815 156619991 -45708356 - L1MC3 LINE L1 -376 7409 7222 261 299 23 0 chr4 156620021 156620108 -45708239 - MLT1F1 LTR MaLR -442 125 37 8697 180 29 19 chr4 156620109 156622596 -45705751 - L1MC3 LINE L1 -687 7516 5007 3121 193 107 56 chr4 156622597 156623058 -45705289 - L1MC3 LINE L1 -4562 2002 1566 2114 76 0 0 chr4 156623058 156623333 -45705014 - L1PA5 LINE L1 -6 6148 5874 3121 193 107 56 chr4 156623333 156624266 -45704081 - L1MC3 LINE L1 -4998 1566 521 1156 172 94 22 chr4 156624290 156624557 -45703790 - MLT2B3 LTR ERVL -268 286 1 26 64 0 0 chr4 156625121 156625168 -45703179 + AT_rich Low_complexity Low_complexity 1 47 0 2119 135 39 33 chr4 156627035 156627397 -45700950 - THE1B LTR MaLR 0 364 1 241 281 0 62 chr4 156627789 156627853 -45700494 - MER91A DNA MER1_type -1 195 136 1386 205 108 0 chr4 156628412 156628719 -45699628 + MER58B DNA MER1_type 2 341 0 205 226 29 29 chr4 156628783 156628885 -45699462 + (TTA)n Simple_repeat Simple_repeat 3 104 0 8091 142 10 5 chr4 156629123 156630457 -45697890 + L1PA16 LINE L1 982 2321 -4528 310 228 33 0 chr4 156630468 156630560 -45697787 + L1M4 LINE L1 3254 3348 -2798 * 4879 143 47 7 chr4 156630546 156631628 -45696719 + L1PA16 LINE L1 5748 6869 0 242 253 12 60 chr4 156632269 156632352 -45695995 + MLT1F LTR MaLR 108 186 -404 264 293 61 40 chr4 156632421 156632619 -45695728 + MLT1F LTR MaLR 336 537 -5 522 302 71 10 chr4 156632788 156633182 -45695165 + L1M4 LINE L1 4456 4873 -1273 1029 142 71 31 chr4 156633558 156633784 -45694563 - L1MA8 LINE L1 -6 6285 6051 28 29 0 0 chr4 156634072 156634107 -45694240 + AT_rich Low_complexity Low_complexity 1 35 0 2638 61 0 0 chr4 156635505 156635815 -45692532 - AluY SINE Alu -1 310 1 1950 57 4 0 chr4 156635881 156636126 -45692221 + L1PA5 LINE L1 5906 6151 -3 29 47 0 0 chr4 156636126 156636169 -45692178 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 156636216 156636238 -45692109 + AT_rich Low_complexity Low_complexity 1 22 0 226 240 0 0 chr4 156636351 156636401 -45691946 - MER91A DNA MER1_type -62 128 79 215 233 23 0 chr4 156636497 156636540 -45691807 - MER91A DNA MER1_type -148 48 5 711 306 85 77 chr4 156637238 156637787 -45690560 - L2 LINE L2 0 3313 2746 1839 146 70 20 chr4 156637787 156638144 -45690203 - THE1C LTR MaLR 0 375 1 711 306 85 77 chr4 156638144 156638360 -45689987 - L2 LINE L2 -567 2746 2533 194 271 102 0 chr4 156639954 156640013 -45688334 - MIR SINE MIR -74 188 124 276 329 0 14 chr4 156640701 156640774 -45687573 - L2 LINE L2 -48 3224 3153 256 150 0 0 chr4 156640778 156640818 -45687529 - L2 LINE L2 -12 3301 3262 1061 219 84 38 chr4 156641101 156641269 -45687078 + MLT1A1 LTR MaLR 1 160 -205 2124 137 129 3 chr4 156641269 156641649 -45686698 + MSTA LTR MaLR 1 428 0 1061 219 84 38 chr4 156641649 156641827 -45686520 + MLT1A1 LTR MaLR 160 363 -2 1309 243 20 11 chr4 156641829 156642183 -45686164 + MLT1A1-int LTR MaLR 1 357 -1378 3292 188 48 3 chr4 156642546 156643372 -45684975 - L1PB1 LINE L1 -1557 4589 3633 * 6274 131 23 7 chr4 156643365 156644557 -45683790 + L1PB1 LINE L1 4576 5799 -352 486 0 0 0 chr4 156644557 156644611 -45683736 + (TA)n Simple_repeat Simple_repeat 1 54 0 6274 131 23 7 chr4 156644611 156644968 -45683379 + L1PB1 LINE L1 5799 6149 -2 29 28 0 0 chr4 156645024 156645060 -45683287 + AT_rich Low_complexity Low_complexity 1 36 0 330 254 139 52 chr4 156645237 156645345 -45683002 - MIR SINE MIR -2 260 130 2486 135 45 116 chr4 156645345 156645899 -45682448 + MLT2B2 LTR ERVL 1 515 0 330 254 139 52 chr4 156645899 156645963 -45682384 - MIR SINE MIR -132 130 73 2351 137 93 5 chr4 156646429 156646861 -45681486 + L1MA8 LINE L1 5807 6276 -15 1620 124 28 0 chr4 156647409 156647659 -45680688 + AluSx SINE Alu 1 257 -55 553 184 8 8 chr4 156647668 156647793 -45680554 + GA-rich Low_complexity Low_complexity 3 127 0 237 98 0 0 chr4 156648280 156648321 -45680026 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 668 227 28 34 chr4 156649423 156649599 -45678748 - L1ME3 LINE L1 -13 6149 5975 478 95 12 0 chr4 156649601 156649685 -45678662 - L1MA7 LINE L1 0 6291 6207 201 176 0 0 chr4 156650079 156650113 -45678234 + (TA)n Simple_repeat Simple_repeat 2 35 0 1402 258 104 5 chr4 156651677 156652372 -45675975 - L1ME3 LINE L1 -208 5962 5199 25 65 0 0 chr4 156652489 156652535 -45675812 + AT_rich Low_complexity Low_complexity 1 46 0 1006 151 23 0 chr4 156652535 156652707 -45675640 - L1MA3 LINE L1 0 6305 6130 14530 109 10 8 chr4 156652732 156655689 -45672658 - L1PA8A LINE L1 -2 6129 3152 783 244 134 43 chr4 156655715 156656077 -45672270 + L1MEc LINE L1 2131 2541 -3674 2248 97 0 10 chr4 156656077 156656376 -45671971 + AluSp SINE Alu 1 296 -17 783 244 134 43 chr4 156656376 156656591 -45671756 + L1MEc LINE L1 2541 2735 -3480 1683 144 19 47 chr4 156657317 156657636 -45670711 + AluJo SINE Alu 2 311 -1 214 211 0 0 chr4 156657901 156657939 -45670408 - MIR SINE MIR -6 256 219 575 307 55 21 chr4 156657962 156658200 -45670147 + MIR SINE MIR 15 260 -2 228 67 0 0 chr4 156658252 156658282 -45670065 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1960 144 15 35 chr4 156659420 156659759 -45668588 - THE1B LTR MaLR 0 364 33 261 256 74 87 chr4 156659840 156659922 -45668425 + L1ME4a LINE L1 5529 5611 -510 2378 98 3 0 chr4 156659922 156660229 -45668118 + AluSp SINE Alu 1 308 -5 261 256 74 87 chr4 156660229 156660376 -45667971 + L1ME4a LINE L1 5611 5755 -366 355 274 45 45 chr4 156660497 156660654 -45667693 + L1ME4a LINE L1 5944 6100 -21 733 190 28 53 chr4 156660656 156660974 -45667373 + MSTD LTR MaLR 3 396 0 207 0 0 0 chr4 156661414 156661437 -45666910 + (TG)n Simple_repeat Simple_repeat 2 24 0 2855 226 30 5 chr4 156661490 156662127 -45666220 - MER82 DNA MER2_type 0 653 1 2010 166 19 0 chr4 156662159 156662484 -45665863 + Tigger3(Golem) DNA MER2_type 1 331 -2698 243 91 0 0 chr4 156662478 156662511 -45665836 + Tigger3(Golem) DNA MER2_type 2195 2227 -802 * 1897 75 14 84 chr4 156662524 156662869 -45665478 - Tigger3(Golem) DNA MER2_type -504 2525 2205 324 336 8 0 chr4 156662899 156663021 -45665326 - L1ME LINE L1 -512 5658 5536 5602 78 7 10 chr4 156663023 156663796 -45664551 - L1PA13 LINE L1 -4 6159 5390 1423 268 47 18 chr4 156663800 156664398 -45663949 + L2 LINE L2 2697 3312 -1 1619 195 3 7 chr4 156664479 156664771 -45663576 - AluJb SINE Alu -11 301 11 1737 167 44 34 chr4 156664809 156665216 -45663131 + L1MC3 LINE L1 6698 7108 -677 1001 173 0 26 chr4 156665216 156665564 -45662783 + MLT1B LTR MaLR 1 390 0 415 170 40 70 chr4 156665564 156665648 -45662699 + MLT1F1 LTR MaLR 37 117 -450 2946 192 37 5 chr4 156665649 156666242 -45662105 + L1MD3 LINE L1 7384 7995 0 242 266 55 9 chr4 156666235 156666344 -45662003 + L1ME4a LINE L1 5315 5428 -742 * 463 256 8 24 chr4 156666513 156666638 -45661709 - MIR SINE MIR -4 258 136 480 246 149 31 chr4 156666684 156667104 -45661243 + MLT1H1 LTR MaLR 25 547 -8 257 237 269 0 chr4 156667105 156667198 -45661149 - MIR SINE MIR -89 173 56 664 254 24 118 chr4 156667458 156667746 -45660601 - MIR SINE MIR 0 262 2 467 254 31 8 chr4 156667884 156668014 -45660333 + L1ME4a LINE L1 5984 6116 -5 30 27 0 0 chr4 156668053 156668090 -45660257 + AT_rich Low_complexity Low_complexity 1 37 0 254 317 12 0 chr4 156668229 156668311 -45660036 + L1ME4a LINE L1 5511 5593 -528 325 257 50 21 chr4 156668346 156668486 -45659861 + L1ME4a LINE L1 5706 5849 -272 1500 204 13 23 chr4 156668526 156668825 -45659522 - AluJb SINE Alu -13 299 4 1643 187 14 20 chr4 156669867 156670161 -45658186 - AluJo SINE Alu -20 292 1 1400 208 11 15 chr4 156670287 156670561 -45657786 + AluJo SINE Alu 3 275 -37 642 13 0 0 chr4 156670564 156670639 -45657708 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 1245 82 0 0 chr4 156670639 156670873 -45657474 + (GGAA)n Simple_repeat Simple_repeat 1 234 0 24 53 0 0 chr4 156671264 156671302 -45657045 + AT_rich Low_complexity Low_complexity 1 38 0 468 258 181 13 chr4 156671735 156671890 -45656457 - MER5A DNA MER1_type 0 189 9 2218 110 0 3 chr4 156671967 156672277 -45656070 + AluSq SINE Alu 1 309 -4 1056 165 67 0 chr4 156672310 156672504 -45655843 - MER3 DNA MER1_type -1 208 2 180 0 0 0 chr4 156672984 156673004 -45655343 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 2285 175 7 29 chr4 156673022 156673434 -45654913 - MLT2D LTR ERVL -11 403 1 835 194 38 38 chr4 156674022 156674233 -45654114 - L1MA9 LINE L1 0 6312 6102 618 159 18 0 chr4 156674206 156674319 -45654028 + L1MA9 LINE L1 6021 6135 -177 * 1025 164 0 56 chr4 156675116 156675311 -45653036 + Tigger1 DNA MER2_type 2 185 -2233 13946 124 26 9 chr4 156675752 156676793 -45651554 + Tigger1 DNA MER2_type 177 1200 -1218 2322 102 0 0 chr4 156676793 156677096 -45651251 - AluY SINE Alu -8 303 1 13946 124 26 9 chr4 156677096 156678260 -45650087 + Tigger1 DNA MER2_type 1200 2418 0 222 344 38 48 chr4 156678898 156679084 -45649263 - MIR SINE MIR -44 218 35 1568 217 33 17 chr4 156680159 156680518 -45647829 + MLT1A1 LTR MaLR 1 365 0 1568 155 90 0 chr4 156680586 156680864 -45647483 + AluJo SINE Alu 1 303 -9 217 197 26 0 chr4 156680980 156681056 -45647291 + (TA)n Simple_repeat Simple_repeat 2 79 0 4615 209 20 77 chr4 156681076 156682823 -45645524 - L1MA9 LINE L1 -38 6274 4643 971 192 17 0 chr4 156682824 156682996 -45645351 + FRAM SINE Alu 1 174 -2 3077 190 40 3 chr4 156682996 156683627 -45644720 - L1MA9 LINE L1 -1496 4650 3997 25 65 0 0 chr4 156683627 156683673 -45644674 + AT_rich Low_complexity Low_complexity 1 46 0 38869 39 0 2 chr4 156684019 156689573 -45638774 + L1PA3 LINE L1 612 6153 -2 397 281 33 33 chr4 156691183 156691304 -45637043 + MIR SINE MIR 8 128 -134 596 157 9 0 chr4 156691482 156691590 -45636757 + AluJb SINE Alu 202 310 -2 436 240 74 16 chr4 156691642 156691763 -45636584 - MIR3 SINE MIR -14 194 67 333 47 0 0 chr4 156692790 156692833 -45635514 + (CAT)n Simple_repeat Simple_repeat 2 44 0 853 214 46 0 chr4 156692839 156693012 -45635335 - MIR SINE MIR -37 225 45 228 309 101 12 chr4 156693783 156693951 -45634396 + L2 LINE L2 2118 2300 -1014 264 341 104 18 chr4 156694077 156694241 -45634106 + MER5B DNA MER1_type 1 178 0 736 242 44 6 chr4 156694465 156694647 -45633700 + MER5A DNA MER1_type 1 189 0 277 357 0 0 chr4 156745349 156745447 -45582900 - L2 LINE L2 -1 3271 3174 2173 151 67 10 chr4 156745484 156745887 -45582460 - MSTB LTR MaLR 0 426 1 805 166 0 0 chr4 156747773 156747918 -45580429 - L1PB4 LINE L1 0 6156 6012 12077 62 7 3 chr4 156748036 156749671 -45578676 - L1P LINE L1 -4502 1644 3 447 337 79 17 chr4 156749880 156750058 -45578289 - MIR3 SINE MIR -1 207 19 356 280 41 25 chr4 156750397 156750670 -45577677 + L1MC4a LINE L1 5683 5791 -330 995 230 5 5 chr4 156751012 156751229 -45577118 + MER58A DNA MER1_type 2 218 -6 293 212 118 35 chr4 156751994 156752079 -45576268 + MIR3 SINE MIR 93 184 -24 602 303 25 30 chr4 156752099 156752115 -45576232 + MIR SINE MIR 66 81 -181 1197 156 63 98 chr4 156752115 156752493 -45575854 - MLT1A1 LTR MaLR 0 365 1 602 303 25 30 chr4 156752493 156752674 -45575673 + MIR SINE MIR 81 262 0 361 207 12 0 chr4 156752800 156752882 -45575465 - LTR37A LTR ERV1 -123 303 221 1394 220 55 12 chr4 156752882 156753228 -45575119 - MLT1A2 LTR MaLR 0 374 14 1999 207 15 0 chr4 156753249 156753655 -45574692 - MLT1A2-int LTR MaLR -9 1726 1315 12034 28 2 0 chr4 156753827 156755704 -45572643 - L1P1 LINE L1 -379 5776 3896 * 13223 34 1 0 chr4 156755695 156757384 -45570963 + L1P1 LINE L1 2195 3884 -2262 228 239 14 42 chr4 156757399 156757470 -45570877 - HAL1 LINE L1 -2436 71 3 927 73 0 0 chr4 156757680 156757790 -45570557 + AluSg/x SINE Alu 85 194 -116 234 0 0 0 chr4 156757983 156758009 -45570338 + (CA)n Simple_repeat Simple_repeat 1 26 0 285 145 0 0 chr4 156758010 156758072 -45570275 + (TC)n Simple_repeat Simple_repeat 1 62 0 252 0 0 0 chr4 156758080 156758108 -45570239 + (CA)n Simple_repeat Simple_repeat 1 28 0 684 305 76 48 chr4 156758145 156758709 -45569638 + L1M4 LINE L1 4259 4838 -1308 402 253 11 0 chr4 156759034 156759125 -45569222 - MER20 DNA MER1_type -13 206 115 197 235 20 0 chr4 156759127 156759178 -45569169 + L2 LINE L2 2698 2749 -565 270 125 0 0 chr4 156759178 156759218 -45569129 + U2 snRNA snRNA 1 40 -148 259 169 296 0 chr4 156759323 156759394 -45568953 - MER20 DNA MER1_type -127 92 1 2400 293 161 32 chr4 156759458 156759868 -45568479 + L2 LINE L2 1229 1584 -1730 252 0 0 0 chr4 156759868 156759896 -45568451 + (TC)n Simple_repeat Simple_repeat 1 28 0 2400 293 161 32 chr4 156759896 156760866 -45567481 + L2 LINE L2 1584 2788 -526 405 353 58 9 chr4 156760891 156761115 -45567232 + LTR16B LTR ERVL 34 268 -196 1085 56 0 28 chr4 156761261 156761404 -45566943 - AluSc SINE Alu -5 304 166 783 295 111 24 chr4 156761473 156761924 -45566423 + L2 LINE L2 2804 3293 -20 2570 64 6 9 chr4 156762047 156762391 -45565956 + L1PA8 LINE L1 5823 6165 -7 2014 156 5 38 chr4 156764631 156765003 -45563344 + MLT1A1 LTR MaLR 4 363 -2 2306 113 15 59 chr4 156765943 156766351 -45561996 + MLT1B LTR MaLR 1 390 0 1747 153 30 34 chr4 156766756 156767051 -45561296 - AluJo SINE Alu -18 294 1 22 56 0 0 chr4 156767102 156767138 -45561209 + AT_rich Low_complexity Low_complexity 1 36 0 2091 159 47 25 chr4 156767316 156767544 -45560803 + L1MA7 LINE L1 5594 5816 -475 2335 109 0 3 chr4 156767544 156767848 -45560499 + AluSx SINE Alu 1 303 -9 2091 159 47 25 chr4 156767848 156768090 -45560257 + L1MA7 LINE L1 5816 6074 -217 514 279 0 0 chr4 156768814 156768950 -45559397 + MER58B DNA MER1_type 204 339 -2 296 323 73 16 chr4 156769000 156769124 -45559223 + L2 LINE L2 3128 3258 -14 646 208 13 44 chr4 156769565 156769724 -45558623 + MLT1H LTR MaLR 396 549 0 11780 42 3 3 chr4 156769867 156769878 -45558469 - L1P LINE L1 -2882 3264 3254 16892 30 0 0 chr4 156769878 156772652 -45555695 - L1PA4 LINE L1 0 6155 3381 11780 42 3 3 chr4 156772652 156774185 -45554162 - L1P LINE L1 -2892 3254 1721 304 280 86 41 chr4 156774367 156774610 -45553737 - L1MC5 LINE L1 -393 7568 7315 21 0 0 0 chr4 156774755 156774776 -45553571 + AT_rich Low_complexity Low_complexity 1 21 0 1584 118 63 11 chr4 156774875 156775145 -45553202 - MER7A DNA MER2_type 0 346 65 334 149 164 0 chr4 156775194 156775261 -45553086 - MER7A DNA MER2_type -270 78 1 358 308 149 41 chr4 156776216 156776320 -45552027 + L3 LINE CR1 1256 1347 -230 3703 130 14 90 chr4 156776320 156777111 -45551236 - L1MB3 LINE L1 -5 6178 5448 358 308 149 41 chr4 156777111 156777201 -45551146 + L3 LINE CR1 1347 1471 -106 468 316 101 0 chr4 156777203 156777342 -45551005 + MER91A DNA MER1_type 4 156 -40 717 244 40 18 chr4 156777557 156778032 -45550315 + MLT1G1 LTR MaLR 3 595 0 261 305 76 9 chr4 156781110 156781215 -45547132 + MIR SINE MIR 64 175 -87 2067 151 0 10 chr4 156781500 156781811 -45546536 - AluJo SINE Alu -4 308 1 207 0 0 0 chr4 156782052 156782075 -45546272 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 641 316 36 8 chr4 156782190 156782440 -45545907 + MIR SINE MIR 1 257 -5 284 221 23 0 chr4 156783073 156783159 -45545188 + (CAGAGA)n Simple_repeat Simple_repeat 3 90 0 387 41 0 0 chr4 156784605 156784654 -45543693 + (CA)n Simple_repeat Simple_repeat 2 50 0 24 0 0 0 chr4 156785145 156785169 -45543178 + AT_rich Low_complexity Low_complexity 1 24 0 204 182 0 0 chr4 156786022 156786066 -45542281 + (ATG)n Simple_repeat Simple_repeat 2 45 0 294 333 84 56 chr4 156786458 156786743 -45541604 + L2 LINE L2 2927 3219 -53 201 121 0 0 chr4 156787721 156787754 -45540593 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr4 156788153 156788174 -45540173 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 156788303 156788326 -45540021 + AT_rich Low_complexity Low_complexity 1 23 0 979 251 141 15 chr4 156788678 156789069 -45539278 - L2 LINE L2 -56 3257 2818 570 167 74 0 chr4 156789116 156789224 -45539123 + MER94 DNA DNA 4 119 -15 434 230 0 10 chr4 156789241 156789341 -45539006 - L2 LINE L2 -528 2786 2688 490 152 25 0 chr4 156789341 156789420 -45538927 + BC200 scRNA scRNA 1 81 -119 605 277 60 0 chr4 156789547 156789731 -45538616 - MIR SINE MIR -67 195 1 1561 208 85 27 chr4 156790914 156791394 -45536953 - L1ME3A LINE L1 -1 6169 5662 897 150 0 0 chr4 156791631 156791764 -45536583 - FLAM_C SINE Alu 0 133 1 2407 51 3 3 chr4 156792046 156792338 -45536009 - AluY SINE Alu -19 292 1 1179 149 99 0 chr4 156792913 156793114 -45535233 + MER58A DNA MER1_type 1 221 -3 701 217 16 0 chr4 156793241 156793370 -45534977 - AluJb SINE Alu -179 133 3 1788 202 0 0 chr4 156793516 156793823 -45534524 - AluJo SINE Alu -5 307 1 2369 114 0 0 chr4 156794265 156794572 -45533775 - AluSx SINE Alu -5 307 1 1563 161 24 4 chr4 156794903 156795157 -45533190 + AluJb SINE Alu 1 259 -53 1247 285 121 3 chr4 156795877 156796470 -45531877 - L1MC4a LINE L1 -1644 6164 5502 27 0 0 0 chr4 156798121 156798148 -45530199 + AT_rich Low_complexity Low_complexity 1 27 0 3441 175 29 16 chr4 156798212 156798942 -45529405 - Charlie1a DNA MER1_type 0 1455 717 414 188 20 30 chr4 156798943 156799044 -45529303 - Charlie1a DNA MER1_type -1095 360 261 1633 141 80 100 chr4 156799058 156799140 -45529207 + L1MC/D LINE L1 5120 5202 -1157 1984 147 0 13 chr4 156799140 156799446 -45528901 + AluJb SINE Alu 1 302 -10 1633 141 80 100 chr4 156799446 156799796 -45528551 + L1MC/D LINE L1 5202 5558 -801 2169 131 0 6 chr4 156799796 156800110 -45528237 - AluSp SINE Alu -1 312 1 1968 149 0 3 chr4 156800115 156800417 -45527930 - AluY SINE Alu -10 301 1 1633 141 80 100 chr4 156800417 156800461 -45527886 + L1MC/D LINE L1 5562 5624 -735 1383 129 0 0 chr4 156800567 156800761 -45527586 - AluSx SINE Alu -118 194 1 2403 80 0 0 chr4 156800766 156801067 -45527280 - AluY SINE Alu -10 301 1 815 92 9 0 chr4 156801067 156801176 -45527171 + L1MD2 LINE L1 5582 5691 -668 2583 213 37 2 chr4 156802343 156802856 -45525491 + L1MD2 LINE L1 5679 6209 -150 * 3368 200 50 19 chr4 156802853 156803248 -45525099 - L1M4 LINE L1 -614 5570 5189 2289 116 0 0 chr4 156803248 156803558 -45524789 - AluSx SINE Alu -2 310 1 3368 200 50 19 chr4 156803558 156804329 -45524018 - L1M4 LINE L1 -995 5189 4279 1087 230 63 0 chr4 156804351 156804590 -45523757 - Charlie1a DNA MER1_type -1201 254 1 3170 120 5 0 chr4 156804598 156805024 -45523323 + MER1A DNA MER1_type 1 428 -101 1450 120 0 66 chr4 156805156 156805414 -45522933 - AluJo SINE Alu -6 306 66 648 265 121 26 chr4 156805529 156805801 -45522546 + LTR16A1 LTR ERVL 160 457 0 277 330 60 41 chr4 156806224 156806491 -45521856 - L2 LINE L2 -1478 1836 1565 2198 151 56 60 chr4 156806640 156807008 -45521339 - MSTA LTR MaLR 0 428 60 2804 110 3 3 chr4 156807008 156807372 -45520975 + THE1B LTR MaLR 1 364 0 11026 97 25 60 chr4 156807373 156809010 -45519337 + THE1B-int LTR MaLR 2 1580 0 2560 128 17 3 chr4 156809010 156809369 -45518978 + THE1B LTR MaLR 1 364 0 2198 151 56 60 chr4 156809369 156809427 -45518920 - MSTA LTR MaLR -366 62 1 336 48 0 0 chr4 156809676 156809718 -45518629 + (TA)n Simple_repeat Simple_repeat 1 42 0 1330 136 9 14 chr4 156810070 156810283 -45518064 + AluJb SINE Alu 85 296 -16 568 284 73 47 chr4 156810814 156810901 -45517446 + L2 LINE L2 3032 3115 -198 2209 101 0 20 chr4 156810901 156811198 -45517149 + AluSg SINE Alu 1 291 -19 568 284 73 47 chr4 156811198 156811385 -45516962 + L2 LINE L2 3115 3313 0 181 268 0 0 chr4 156811410 156811451 -45516896 + L2 LINE L2 1890 1930 -1384 * 256 174 22 0 chr4 156811445 156811491 -45516856 - L2 LINE L2 -256 3057 3011 930 96 17 28 chr4 156813524 156813564 -45514783 + (GAAA)n Simple_repeat Simple_repeat 1 215 0 930 96 17 28 chr4 156813564 156813742 -45514605 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 882 221 12 42 chr4 156813829 156814069 -45514278 + HAL1 LINE L1 1709 1941 -566 429 138 0 0 chr4 156814117 156814197 -45514150 + (TG)n Simple_repeat Simple_repeat 2 81 0 482 234 41 117 chr4 156814229 156814453 -45513894 + HAL1 LINE L1 2222 2421 -86 1522 249 101 44 chr4 156814453 156814978 -45513369 + MLT1H1 LTR MaLR 1 555 0 482 234 41 117 chr4 156814978 156815044 -45513303 + HAL1 LINE L1 2421 2490 -17 976 201 0 0 chr4 156815047 156815206 -45513141 - AluJb SINE Alu -24 288 130 26 0 0 0 chr4 156815213 156815239 -45513108 + AT_rich Low_complexity Low_complexity 1 26 0 819 169 75 0 chr4 156815244 156815404 -45512943 + L1MD2 LINE L1 6175 6346 -13 2346 102 3 0 chr4 156815638 156815942 -45512405 + AluSx SINE Alu 1 305 -7 520 184 5 0 chr4 156815955 156816070 -45512277 - L1MC4a LINE L1 -304 5817 5715 1819 173 17 0 chr4 156816825 156817126 -45511221 + AluJo SINE Alu 1 306 -6 394 308 0 0 chr4 156817461 156817565 -45510782 - MER94 DNA DNA 0 134 31 21 36 0 0 chr4 156817879 156817907 -45510440 + AT_rich Low_complexity Low_complexity 1 28 0 882 207 48 5 chr4 156818202 156818390 -45509957 + MER74A LTR ERVL 1 196 -362 1097 107 7 0 chr4 156818395 156818544 -45509803 - LTR8 LTR ERV1 -18 673 524 1354 99 0 0 chr4 156818544 156818743 -45509604 - AluSg/x SINE Alu 0 309 111 2132 101 7 16 chr4 156819798 156820106 -45508241 + AluSx SINE Alu 1 305 -7 2500 110 37 47 chr4 156820588 156820969 -45507378 - MER51B LTR ERV1 0 377 1 485 138 0 0 chr4 156821320 156821385 -45506962 - AluJ/FLAM SINE Alu -234 78 14 487 286 67 17 chr4 156821530 156821768 -45506579 - HAL1 LINE L1 -846 1661 1412 1655 167 7 11 chr4 156821819 156822095 -45506252 - AluJo SINE Alu -21 291 17 2927 313 80 50 chr4 156822141 156822994 -45505353 - ERVL LTR ERVL -2297 3467 2641 4688 122 15 48 chr4 156822994 156823707 -45504640 + LTR8 LTR ERV1 1 690 -1 2927 313 80 50 chr4 156823707 156824772 -45503575 - ERVL LTR ERVL -3123 2641 1492 475 315 55 76 chr4 156824828 156825066 -45503281 + LTR16B LTR ERVL 18 250 -214 873 182 0 13 chr4 156825173 156825327 -45503020 - FRAM SINE Alu -17 159 8 230 203 130 0 chr4 156825379 156825448 -45502899 - LTR16C LTR ERVL -48 443 366 * 1563 178 57 27 chr4 156825446 156825777 -45502570 - MLT1C LTR MaLR -121 346 6 1677 174 81 79 chr4 156827163 156827428 -45500919 - Charlie4a DNA MER1_type -1453 508 240 2228 114 0 0 chr4 156827428 156827736 -45500611 - AluSx SINE Alu -4 308 1 1677 174 81 79 chr4 156827736 156827940 -45500407 - Charlie4a DNA MER1_type -1721 240 38 1878 209 11 8 chr4 156828347 156828711 -45499636 + MLT1A1 LTR MaLR 1 365 0 205 274 20 0 chr4 156828773 156828824 -45499523 - L2 LINE L2 -18 3254 3203 2400 103 0 0 chr4 156828947 156829258 -45499089 + AluSx SINE Alu 1 311 -1 306 270 86 80 chr4 156829480 156829531 -45498816 - MIR3 SINE MIR -6 202 153 2422 88 0 7 chr4 156829531 156829839 -45498508 + AluSq SINE Alu 1 306 -7 306 270 86 80 chr4 156829839 156829950 -45498397 - MIR3 SINE MIR -55 153 39 2017 152 0 3 chr4 156830177 156830474 -45497873 - AluSx SINE Alu -16 296 1 1306 238 19 108 chr4 156830478 156830739 -45497608 + MLT2B1 LTR ERVL 1 131 -389 2194 132 0 0 chr4 156830739 156831049 -45497298 - AluSq SINE Alu -3 310 1 1306 238 19 108 chr4 156831049 156831357 -45496990 + MLT2B1 LTR ERVL 131 465 -55 1958 177 0 0 chr4 156831491 156831802 -45496545 - AluJo SINE Alu -1 311 1 213 262 0 0 chr4 156832082 156832124 -45496223 - MIR SINE MIR -3 259 218 1071 276 106 65 chr4 156832132 156832393 -45495954 - L2 LINE L2 0 3313 3064 1730 174 11 3 chr4 156832393 156832675 -45495672 + AluJo SINE Alu 3 286 -26 1071 276 106 65 chr4 156832675 156832903 -45495444 - L2 LINE L2 -249 3064 2804 240 319 133 0 chr4 156832903 156833038 -45495309 - MIR SINE MIR -82 180 28 1392 113 21 0 chr4 156833038 156833232 -45495115 - AluSc SINE Alu -5 304 107 264 269 67 42 chr4 156833597 156833716 -45494631 + LTR67 LTR ERVL 354 475 -82 784 214 48 52 chr4 156833847 156834041 -45494306 + LTR37A LTR ERV1 43 286 -182 1320 159 148 4 chr4 156834041 156834298 -45494049 - AluJb SINE Alu -17 295 2 784 214 48 52 chr4 156834298 156834421 -45493926 + LTR37A LTR ERV1 286 408 -60 551 211 31 57 chr4 156834423 156834617 -45493730 + LTR37A LTR ERV1 234 422 -4 3011 160 2 20 chr4 156834618 156835141 -45493206 + L1PB4 LINE L1 5662 6156 0 302 274 132 0 chr4 156835259 156835365 -45492982 + MIR SINE MIR 34 153 -55 1974 126 138 84 chr4 156835383 156835424 -45492923 - MSTA LTR MaLR 0 428 391 2388 109 0 0 chr4 156835424 156835735 -45492612 + AluSq SINE Alu 1 311 -2 1974 126 138 84 chr4 156835735 156836099 -45492248 - MSTA LTR MaLR -37 391 1 239 0 32 0 chr4 156836319 156836350 -45491997 + (CA)n Simple_repeat Simple_repeat 2 33 0 1076 217 132 24 chr4 156836689 156836984 -45491363 + MLT1A1 LTR MaLR 1 327 -38 228 259 0 86 chr4 156837927 156838008 -45490339 - MIR3 SINE MIR -14 194 121 207 194 0 0 chr4 156838674 156838710 -45489637 + T-rich Low_complexity Low_complexity 2 37 0 406 213 90 8 chr4 156839537 156839659 -45488688 - MIR SINE MIR -6 256 125 464 283 17 44 chr4 156839961 156840141 -45488206 - MIR SINE MIR -81 181 7 367 313 16 57 chr4 156841083 156841275 -45487072 - MIR SINE MIR -56 206 23 2292 125 0 0 chr4 156841440 156841753 -45486594 - AluSq SINE Alu 0 313 1 1231 149 11 5 chr4 156841856 156842044 -45486303 + MER5A DNA MER1_type 1 189 0 662 225 6 77 chr4 156842058 156842160 -45486187 - MER5B DNA MER1_type -6 172 87 1091 141 17 98 chr4 156842160 156842394 -45485953 - MER20 DNA MER1_type -4 215 1 662 225 6 77 chr4 156842394 156842473 -45485874 - MER5B DNA MER1_type -91 87 4 218 286 0 0 chr4 156843504 156843553 -45484794 - L2 LINE L2 -19 3294 3246 249 33 0 0 chr4 156843690 156843720 -45484627 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 316 187 37 45 chr4 156846492 156846626 -45481721 + (TTATA)n Simple_repeat Simple_repeat 5 137 0 1357 187 0 5 chr4 156847954 156848168 -45480179 + AluJo SINE Alu 1 213 -99 23 86 0 0 chr4 156848203 156848261 -45480086 + AT_rich Low_complexity Low_complexity 1 58 0 313 169 0 34 chr4 156848853 156848912 -45479435 - Alu SINE Alu -6 296 240 543 286 147 13 chr4 156849163 156849236 -45479111 - MIR SINE MIR -1 261 199 1889 149 3 20 chr4 156849236 156849538 -45478809 + AluSx SINE Alu 1 297 -15 543 286 147 13 chr4 156849538 156849688 -45478659 - MIR SINE MIR -63 199 8 5449 108 18 74 chr4 156849712 156850460 -45477887 - MER4D LTR ERV1 0 903 219 2565 62 0 0 chr4 156850460 156850769 -45477578 - AluY SINE Alu -2 309 1 5449 108 18 74 chr4 156850769 156850977 -45477370 - MER4D LTR ERV1 -684 219 1 217 109 43 0 chr4 156851493 156851539 -45476808 + A-rich Low_complexity Low_complexity 3 50 0 29 0 0 0 chr4 156851877 156851906 -45476441 + AT_rich Low_complexity Low_complexity 1 29 0 769 220 148 3 chr4 156853218 156853451 -45474896 - MLT1H1 LTR MaLR -28 527 283 320 272 170 20 chr4 156853482 156853629 -45474718 - MLT1H1 LTR MaLR -386 169 1 1360 151 77 53 chr4 156853654 156853939 -45474408 + AluJo SINE Alu 1 292 -10 339 318 91 20 chr4 156854176 156854374 -45473973 + L1ME LINE L1 5606 5817 -304 23 33 0 0 chr4 156854718 156854748 -45473599 + AT_rich Low_complexity Low_complexity 1 30 0 1973 258 106 53 chr4 156855220 156855325 -45473022 - L2 LINE L2 -5 3308 3210 1621 153 87 3 chr4 156855325 156855613 -45472734 - AluJb SINE Alu 0 312 1 1973 258 106 53 chr4 156855613 156856580 -45471767 - L2 LINE L2 -103 3210 1986 2314 69 0 39 chr4 156858704 156859010 -45469337 + AluY SINE Alu 1 294 -17 2489 56 0 44 chr4 156859010 156859330 -45469017 + AluY SINE Alu 1 306 -5 348 24 0 0 chr4 156859965 156860006 -45468341 + (TG)n Simple_repeat Simple_repeat 2 42 0 401 312 70 25 chr4 156860752 156860951 -45467396 + L3 LINE CR1 1361 1568 -9 1911 170 47 21 chr4 156861396 156861866 -45466481 + Charlie4a DNA MER1_type 26 507 -1 264 379 45 61 chr4 156863259 156863684 -45464663 - L2 LINE L2 -22 3250 2833 419 247 200 7 chr4 156863831 156863981 -45464366 + MIR SINE MIR 78 256 -6 225 262 107 0 chr4 156864164 156864248 -45464099 + MIR SINE MIR 105 197 -65 32 57 0 0 chr4 156864532 156864585 -45463762 + AT_rich Low_complexity Low_complexity 1 53 0 303 243 10 29 chr4 156865001 156865104 -45463243 - MLT1J LTR MaLR -2 509 409 1696 59 68 0 chr4 156867856 156868076 -45460271 + AluY SINE Alu 75 309 -2 559 251 204 14 chr4 156868379 156868590 -45459757 + MIR SINE MIR 12 262 0 317 240 233 42 chr4 156868925 156869090 -45459257 + MIR3 SINE MIR 2 195 -47 605 219 85 37 chr4 156872114 156872278 -45456069 - L2 LINE L2 -1 3312 3141 1118 286 58 11 chr4 156872290 156872653 -45455694 + L2 LINE L2 2275 2654 -660 1821 158 9 17 chr4 156873056 156873405 -45454942 - L1MC2 LINE L1 -11 6333 5988 1839 163 0 40 chr4 156874830 156875155 -45453192 - AluJb SINE Alu 0 312 1 2218 128 0 0 chr4 156875538 156875842 -45452505 + AluSx SINE Alu 1 304 -8 2250 126 42 20 chr4 156876059 156876415 -45451932 + THE1B LTR MaLR 1 364 0 315 361 63 11 chr4 156876421 156876612 -45451735 - L1ME LINE L1 -409 5753 5553 1331 112 11 85 chr4 156876809 156877069 -45451278 - AluJo SINE Alu -6 306 66 280 88 24 0 chr4 156877213 156877260 -45451087 + MSTD LTR MaLR 306 383 -12 1465 212 48 43 chr4 156878275 156878647 -45449700 - MLT1A2 LTR MaLR 0 374 1 914 241 39 7 chr4 156878647 156879009 -45449338 - MLT1A2-int LTR MaLR 0 1651 955 1794 143 3 71 chr4 156879054 156879376 -45448971 + AluJb SINE Alu 1 300 -12 394 264 0 0 chr4 156879515 156879606 -45448741 - MLT1A2-int LTR MaLR -968 767 677 363 179 0 0 chr4 156879661 156879728 -45448619 - MLT1-int LTR MaLR -484 887 821 1843 194 2 28 chr4 156879728 156879903 -45448444 - MLT1-int LTR MaLR -696 675 497 2073 143 0 0 chr4 156879903 156880183 -45448164 - AluSx SINE Alu -32 280 1 1843 194 2 28 chr4 156880183 156880434 -45447913 - MLT1-int LTR MaLR -874 497 260 600 171 0 0 chr4 156880425 156880536 -45447811 - MLT1-int LTR MaLR -1620 115 5 * 1982 171 67 99 chr4 156880540 156881077 -45447270 - MLT2B1 LTR ERVL 0 520 1 1158 145 137 4 chr4 156881322 156881584 -45446763 - L1MB5 LINE L1 -8 6166 5870 472 243 130 45 chr4 156882983 156883230 -45445117 - MARNA DNA Mariner -14 572 305 533 256 30 24 chr4 156883270 156883434 -45444913 - MARNA DNA Mariner -353 233 69 208 240 29 19 chr4 156883684 156883788 -45444559 + (TAAA)n Simple_repeat Simple_repeat 4 108 0 189 0 0 0 chr4 156883987 156884008 -45444339 + (TG)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr4 156885685 156885707 -45442640 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr4 156885784 156885810 -45442537 + AT_rich Low_complexity Low_complexity 1 26 0 1471 132 30 56 chr4 156886267 156886570 -45441777 - AluJb SINE Alu -17 295 1 548 271 59 18 chr4 156886874 156887044 -45441303 - MIR SINE MIR -52 210 34 1086 218 132 24 chr4 156887353 156887487 -45440860 - Charlie4a DNA MER1_type -1453 508 390 2039 115 31 0 chr4 156887487 156887608 -45440739 + AluSx SINE Alu 1 117 -195 243 0 0 0 chr4 156887608 156887635 -45440712 + (CA)n Simple_repeat Simple_repeat 2 28 0 2039 115 31 0 chr4 156887635 156887801 -45440546 + AluSx SINE Alu 117 297 -15 1086 218 132 24 chr4 156887801 156888092 -45440255 - Charlie4a DNA MER1_type -1571 390 37 5445 97 33 14 chr4 156888422 156889314 -45439033 + L1PB1 LINE L1 5236 6145 -6 599 168 40 104 chr4 156889653 156889855 -45438492 - MER53 DNA DNA 0 189 1 1042 295 44 3 chr4 156889858 156890245 -45438102 + LTR16C LTR ERVL 89 491 0 313 252 126 38 chr4 156890382 156890541 -45437806 - MIR SINE MIR -22 240 68 1893 159 37 0 chr4 156890551 156890847 -45437500 + AluJo SINE Alu 5 311 -1 2569 40 0 0 chr4 156890853 156891151 -45437196 + AluY SINE Alu 1 298 -13 188 312 112 67 chr4 156891548 156891603 -45436744 - L2 LINE L2 -473 2841 2790 2521 158 19 0 chr4 156891603 156892022 -45436325 + MSTC LTR MaLR 2 428 0 188 312 112 67 chr4 156892022 156892235 -45436112 - L2 LINE L2 -524 2790 2561 241 322 42 42 chr4 156892726 156892844 -45435503 + MLT1K LTR MaLR 125 242 -346 285 292 67 17 chr4 156893126 156893246 -45435101 + MLT1K LTR MaLR 448 573 -15 780 231 21 5 chr4 156893521 156893707 -45434640 + MLT1E LTR MaLR 403 591 -2 346 247 0 0 chr4 156893707 156893784 -45434563 - ERVL LTR ERVL -2787 2977 2901 305 258 0 11 chr4 156893965 156894058 -45434289 + MLT2F LTR ERVL 506 597 -66 204 40 0 0 chr4 156894058 156894083 -45434264 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 2329 79 0 7 chr4 156894406 156894698 -45433649 + AluSg1 SINE Alu 1 290 -19 708 185 8 0 chr4 156894746 156894865 -45433482 + FLAM_A SINE Alu 1 120 -13 2138 241 76 22 chr4 156895028 156895617 -45432730 - MLT2E LTR ERVL -7 621 1 646 247 64 41 chr4 156896083 156896325 -45432022 - MIR SINE MIR -13 249 5 203 293 50 50 chr4 156896745 156896844 -45431503 - L2 LINE L2 -5 3267 3169 2024 136 0 10 chr4 156896862 156897157 -45431190 + AluSx SINE Alu 1 292 -20 1235 158 5 36 chr4 156898148 156898369 -45429978 - AluJo SINE Alu -21 291 78 1858 152 35 0 chr4 156898373 156898656 -45429691 - AluJo SINE Alu -16 296 4 343 259 12 12 chr4 156898715 156898800 -45429547 + L2 LINE L2 3187 3271 -1 2443 76 0 7 chr4 156898957 156899260 -45429087 + AluY SINE Alu 1 301 -10 2014 108 10 39 chr4 156899503 156899808 -45428539 + AluSx SINE Alu 9 304 -8 25 31 0 0 chr4 156899983 156900015 -45428332 + AT_rich Low_complexity Low_complexity 1 32 0 324 83 0 0 chr4 156900258 156900306 -45428041 + (CAATA)n Simple_repeat Simple_repeat 3 50 0 21 0 0 0 chr4 156901000 156901021 -45427326 + AT_rich Low_complexity Low_complexity 1 21 0 653 303 104 0 chr4 156901218 156901469 -45426878 + LTR33 LTR ERVL 4 280 -241 344 207 66 25 chr4 156901527 156901648 -45426699 + LTR33 LTR ERVL 392 517 -4 1942 129 35 3 chr4 156901995 156902337 -45426010 + L1MA5 LINE L1 5948 6300 0 315 288 74 17 chr4 156902471 156902631 -45425716 - MLT1J2 LTR MaLR -228 181 15 365 326 21 0 chr4 156902870 156903011 -45425336 - ERVL LTR ERVL -2213 3551 3408 1102 301 67 19 chr4 156903043 156904012 -45424335 - ERVL LTR ERVL -2511 3253 2165 216 241 0 0 chr4 156904017 156904075 -45424272 + (TG)n Simple_repeat Simple_repeat 1 58 0 690 320 41 7 chr4 156904075 156904488 -45423859 - ERVL LTR ERVL -3574 2190 1764 1085 168 6 0 chr4 156905080 156905253 -45423094 + AluSg/x SINE Alu 131 304 -8 587 171 7 64 chr4 156905397 156905537 -45422810 + MLT1E2 LTR MaLR 1 132 -373 836 136 0 0 chr4 156905537 156905647 -45422700 + FLAM_C SINE Alu 1 110 -33 1240 243 99 38 chr4 156905685 156906127 -45422220 + MLT1E2 LTR MaLR 123 619 -7 370 339 58 0 chr4 156907579 156907700 -45420647 + MER119 DNA MER1_type 1 128 -455 622 184 24 0 chr4 156907708 156907833 -45420514 + MER119 DNA MER1_type 456 583 0 260 146 21 0 chr4 156908264 156908312 -45420035 - MER58 DNA MER1_type 0 2420 2372 2336 141 34 5 chr4 156908349 156908795 -45419552 + L1MB4 LINE L1 5657 6115 -65 2075 223 38 41 chr4 156909210 156909793 -45418554 - MLT1G LTR MaLR 0 590 10 1320 176 0 0 chr4 156910392 156910619 -45417728 - MER46A DNA MER2_type -9 227 1 2255 81 0 0 chr4 156911123 156911434 -45416913 - AluY SINE Alu 0 311 1 449 302 82 11 chr4 156911729 156911911 -45416436 + MIR SINE MIR 31 225 -37 2335 74 13 0 chr4 156914129 156914428 -45413919 - AluSp SINE Alu -10 303 1 2317 93 3 0 chr4 156914455 156914757 -45413590 - AluSg SINE Alu -7 303 1 554 290 111 25 chr4 156915088 156915533 -45412814 + L2 LINE L2 2668 3169 -144 845 268 103 62 chr4 156915737 156916192 -45412155 - L2 LINE L2 -611 2703 2230 495 131 0 0 chr4 156916197 156916283 -45412064 - MLT1B LTR MaLR -4 463 301 22 35 0 0 chr4 156916776 156916805 -45411542 + AT_rich Low_complexity Low_complexity 1 29 0 1229 169 165 11 chr4 156917245 156917505 -45410842 - AluSg SINE Alu 0 300 1 1081 163 119 44 chr4 156917581 156917875 -45410472 + MER44D DNA MER2_type 24 609 0 1367 146 21 25 chr4 156918027 156918267 -45410080 - AluJo SINE Alu -15 297 59 2071 98 54 7 chr4 156918427 156918723 -45409624 + AluSx SINE Alu 1 310 -2 782 152 0 8 chr4 156918908 156919040 -45409307 - FLAM_C SINE Alu -2 131 1 25 75 0 0 chr4 156919505 156919558 -45408789 + AT_rich Low_complexity Low_complexity 1 53 0 4889 87 21 4 chr4 156921020 156921700 -45406647 - LTR8 LTR ERV1 0 691 1 247 288 100 0 chr4 156921794 156921874 -45406473 - L3 LINE CR1 -56 1521 1434 297 267 176 12 chr4 156921908 156922073 -45406274 - L2 LINE L2 -5 3308 3117 1318 186 66 38 chr4 156922127 156922493 -45405854 - MER31B LTR ERV1 -90 376 1 1644 110 94 12 chr4 156922563 156922817 -45405530 - AluSg SINE Alu -20 290 16 501 145 0 0 chr4 156922817 156922893 -45405454 + AluJo SINE Alu 59 134 -178 1026 178 89 10 chr4 156922893 156923095 -45405252 + AluJb SINE Alu 1 218 -94 286 98 0 0 chr4 156923098 156923139 -45405208 + FLAM SINE Alu 87 127 -6 1557 212 14 7 chr4 156923143 156923436 -45404911 + AluJb SINE Alu 1 295 -17 25 65 0 0 chr4 156925103 156925149 -45403198 + AT_rich Low_complexity Low_complexity 1 46 0 416 248 79 61 chr4 156925640 156925854 -45402493 + L1ME LINE L1 5605 5822 -299 322 251 42 30 chr4 156926938 156927105 -45401242 + L1ME4a LINE L1 5693 5861 -260 2018 129 27 0 chr4 156927160 156927455 -45400892 + AluSq SINE Alu 1 303 -10 313 204 43 32 chr4 156927500 156927593 -45400754 - HAL1b LINE L1 -31 1317 1224 198 0 0 0 chr4 156927728 156927750 -45400597 + (TTTTTA)n Simple_repeat Simple_repeat 4 25 0 308 244 96 9 chr4 156927750 156927865 -45400482 - L1MC/D LINE L1 -2002 5806 5682 301 292 146 36 chr4 156928298 156928488 -45399859 - MIR SINE MIR -26 236 17 1185 196 9 35 chr4 156928577 156928806 -45399541 + AluJo SINE Alu 1 223 -89 2216 85 14 14 chr4 156929991 156930284 -45398063 - AluY SINE Alu -18 293 1 4433 172 64 27 chr4 156930985 156932908 -45395439 + L1MA9 LINE L1 4228 6203 -109 24 0 0 0 chr4 156932933 156932957 -45395390 + AT_rich Low_complexity Low_complexity 1 24 0 535 148 319 7 chr4 156934799 156934934 -45393413 + MER5B DNA MER1_type 1 177 -1 281 320 40 20 chr4 156935155 156935255 -45393092 + L2 LINE L2 94 195 -3119 1884 253 202 26 chr4 156935290 156935327 -45393020 + L2 LINE L2 2043 2072 -1241 2122 149 10 0 chr4 156935327 156935636 -45392711 - AluJb SINE Alu 0 312 1 1884 253 202 26 chr4 156935636 156935987 -45392360 + L2 LINE L2 2072 2360 -953 1545 166 35 7 chr4 156935987 156936270 -45392077 - AluJo SINE Alu -16 296 6 1884 253 202 26 chr4 156936270 156936954 -45391393 + L2 LINE L2 2360 3301 -12 1754 164 0 4 chr4 156936955 156937224 -45391123 - AluJb SINE Alu -44 268 1 2164 115 3 7 chr4 156937505 156937801 -45390546 - AluSx SINE Alu -17 295 1 1913 151 3 28 chr4 156938238 156938557 -45389790 + AluJb SINE Alu 1 311 -1 733 183 41 15 chr4 156938777 156938974 -45389373 + L1MC4 LINE L1 7197 7398 -644 1426 170 21 4 chr4 156938974 156939215 -45389132 + AluJo SINE Alu 1 245 -67 1107 206 107 43 chr4 156939215 156939609 -45388738 + L1MC4 LINE L1 7623 8041 -1 22 0 0 0 chr4 156939628 156939650 -45388697 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr4 156939801 156939825 -45388522 + (A)n Simple_repeat Simple_repeat 1 24 0 536 257 53 30 chr4 156940607 156940872 -45387475 + L1MC4 LINE L1 7627 7897 -145 673 139 0 0 chr4 156941792 156941893 -45386454 + AluJb SINE Alu 200 300 -12 1038 206 132 23 chr4 156941963 156942120 -45386227 - MER21B LTR ERV1 -108 755 617 1731 157 122 157 chr4 156942120 156942782 -45385565 + LTR8A LTR ERV1 1 635 -92 2350 97 0 0 chr4 156942782 156943071 -45385276 - AluSx SINE Alu -10 302 14 1731 157 122 157 chr4 156943071 156943161 -45385186 + LTR8A LTR ERV1 635 727 0 1038 206 132 23 chr4 156943161 156943313 -45385034 - MER21B LTR ERV1 -246 617 412 976 218 44 5 chr4 156943336 156943542 -45384805 + MER21B LTR ERV1 15 228 -635 210 343 0 0 chr4 156943661 156943766 -45384581 + C-rich Low_complexity Low_complexity 1 105 0 250 250 10 30 chr4 156944016 156944116 -45384231 + L1MC/D LINE L1 5793 5890 -1918 212 174 0 14 chr4 156944169 156944238 -45384109 + GA-rich Low_complexity Low_complexity 2 69 0 551 138 12 0 chr4 156944677 156944757 -45383590 + AluSq SINE Alu 1 81 -231 2420 68 0 0 chr4 156944758 156945053 -45383294 + AluY SINE Alu 1 295 -16 1874 92 0 0 chr4 156945053 156945291 -45383056 + AluSq SINE Alu 73 312 -1 2243 97 10 10 chr4 156945432 156945743 -45382604 - AluSq SINE Alu -2 311 1 411 307 0 0 chr4 156945794 156945908 -45382439 - MER81 DNA DNA 0 114 1 277 308 33 33 chr4 156945981 156946101 -45382246 + MIR SINE MIR 37 156 -106 1859 160 10 7 chr4 156946214 156946520 -45381827 + AluJb SINE Alu 6 312 0 1587 230 121 66 chr4 156947055 156947371 -45380976 + L1ME3A LINE L1 5106 5403 -767 2497 68 0 3 chr4 156947371 156947678 -45380669 + AluY SINE Alu 1 306 -5 1587 230 121 66 chr4 156947678 156948379 -45379968 + L1ME3A LINE L1 5403 6166 -4 1866 164 20 3 chr4 156948384 156948689 -45379658 + AluJo SINE Alu 1 310 -2 1188 211 19 11 chr4 156948907 156949168 -45379179 + MLT1A1 LTR MaLR 103 365 0 205 274 20 0 chr4 156949230 156949281 -45379066 - L2 LINE L2 -18 3254 3203 2400 103 0 0 chr4 156949404 156949715 -45378632 + AluSx SINE Alu 1 311 -1 306 270 86 80 chr4 156949937 156949988 -45378359 - MIR3 SINE MIR -6 202 153 2422 88 0 7 chr4 156949988 156950296 -45378051 + AluSq SINE Alu 1 306 -7 306 270 86 80 chr4 156950296 156950407 -45377940 - MIR3 SINE MIR -55 153 39 2229 79 3 23 chr4 156950634 156950937 -45377410 - AluSq SINE Alu -16 297 1 180 0 0 0 chr4 156950950 156950970 -45377377 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 1573 45 6 0 chr4 156950970 156951148 -45377199 - L1PA8 LINE L1 -17 6155 5977 1093 208 99 10 chr4 156951150 156951443 -45376904 + L1MC4 LINE L1 7347 7665 -377 1291 216 30 4 chr4 156951469 156951737 -45376610 - AluJo SINE Alu -37 275 1 360 246 192 24 chr4 156951747 156951914 -45376433 + L1MC4 LINE L1 7701 7895 -147 1732 179 0 10 chr4 156952104 156952401 -45375946 + AluJo SINE Alu 1 294 -18 2515 64 0 0 chr4 156952462 156952760 -45375587 + AluY SINE Alu 1 298 -13 1638 146 44 22 chr4 156952885 156953160 -45375187 + MER21B LTR ERV1 405 685 -178 1079 232 140 12 chr4 156953510 156953838 -45374509 - MSTD LTR MaLR -25 371 2 2340 77 0 10 chr4 156953939 156954236 -45374111 - AluSp SINE Alu -18 295 2 400 158 0 0 chr4 156954264 156954321 -45374026 + AluJ/FLAM SINE Alu 2 58 -254 4588 214 99 27 chr4 156954333 156955256 -45373091 + L1MB2 LINE L1 3855 4921 -1225 2225 96 0 3 chr4 156955256 156955549 -45372798 + AluY SINE Alu 4 295 -16 4588 214 99 27 chr4 156955549 156956070 -45372277 + L1MB2 LINE L1 4921 5403 -743 1513 184 60 21 chr4 156956079 156956415 -45371932 + L1MB2 LINE L1 5822 6170 -1 23 0 0 0 chr4 156956627 156956650 -45371697 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 156956716 156956741 -45371606 + AT_rich Low_complexity Low_complexity 1 25 0 551 107 0 0 chr4 156956824 156956899 -45371448 + AluSc SINE Alu 221 295 -14 684 186 0 0 chr4 156956979 156957081 -45371266 + FLAM_A SINE Alu 8 109 -33 218 157 0 20 chr4 156957087 156957138 -45371209 + (CACCC)n Simple_repeat Simple_repeat 2 51 0 2037 244 35 70 chr4 156957160 156957598 -45370749 + L1MC4 LINE L1 6341 6748 -1294 2177 93 24 3 chr4 156957598 156957887 -45370460 + AluSq SINE Alu 1 295 -18 2037 244 35 70 chr4 156957887 156958133 -45370214 + L1MC4 LINE L1 6748 7001 -1041 1829 176 3 0 chr4 156959594 156959895 -45368452 - AluJo SINE Alu -10 302 1 1276 159 108 43 chr4 156959984 156960261 -45368086 - AluJo SINE Alu -17 295 1 301 383 43 30 chr4 156960388 156960623 -45367724 - MIR SINE MIR -23 239 2 204 40 0 0 chr4 156960722 156960747 -45367600 + (TG)n Simple_repeat Simple_repeat 2 26 0 1377 171 3 89 chr4 156960747 156960923 -45367424 - AluJo SINE Alu -34 278 137 2350 104 0 0 chr4 156960923 156961232 -45367115 + AluY SINE Alu 1 309 -2 1377 171 3 89 chr4 156961232 156961359 -45366988 - AluJo SINE Alu -175 137 1 2316 85 3 3 chr4 156961676 156961983 -45366364 + AluY SINE Alu 1 307 -4 359 225 9 36 chr4 156962588 156962699 -45365648 + L1MC4a LINE L1 5793 5900 -1908 191 188 0 14 chr4 156962741 156962810 -45365537 + GA-rich Low_complexity Low_complexity 2 69 0 444 313 80 7 chr4 156963360 156963653 -45364694 - L1MC/D LINE L1 -393 5728 5405 291 276 89 42 chr4 156963887 156964101 -45364246 - L1MC/D LINE L1 -1179 4967 4744 198 0 0 0 chr4 156964308 156964330 -45364017 + (A)n Simple_repeat Simple_repeat 1 22 0 571 279 33 6 chr4 156964606 156964789 -45363558 + L1ME LINE L1 5558 5745 -376 1726 123 69 108 chr4 156965628 156966018 -45362329 + THE1C LTR MaLR 1 375 0 2315 92 0 0 chr4 156966289 156966583 -45361764 + AluY SINE Alu 1 294 -17 1308 177 87 43 chr4 156966591 156966868 -45361479 + AluJo SINE Alu 1 289 -23 811 149 0 15 chr4 156967058 156967192 -45361155 + AluSx SINE Alu 1 132 -180 2328 67 3 3 chr4 156967643 156967964 -45360383 - AluSp SINE Alu 0 321 1 185 333 0 0 chr4 156969011 156969053 -45359294 + L2 LINE L2 3137 3178 -94 1055 177 6 0 chr4 156969384 156969565 -45358782 + MLT1B LTR MaLR 197 378 -12 217 300 12 25 chr4 156969853 156969933 -45358414 + MIR3 SINE MIR 128 206 -2 208 226 48 0 chr4 156970155 156970217 -45358130 - MIR SINE MIR -112 150 86 34 24 0 0 chr4 156970256 156970297 -45358050 + AT_rich Low_complexity Low_complexity 1 41 0 241 219 0 31 chr4 156972015 156972079 -45356268 - MER5C DNA MER1_type 0 324 263 231 114 0 0 chr4 156972081 156972116 -45356231 - HY1 scRNA scRNA -1 111 77 391 293 69 0 chr4 156972279 156972395 -45355952 - MER5C DNA MER1_type -200 124 1 2509 70 3 0 chr4 156972466 156972766 -45355581 - AluSp SINE Alu -12 301 1 1179 121 16 11 chr4 156974276 156974458 -45353889 + AluSx SINE Alu 116 298 -11 727 233 52 6 chr4 156974539 156974711 -45353636 + MLT1A1 LTR MaLR 186 365 0 26 0 0 0 chr4 156974866 156974892 -45353455 + AT_rich Low_complexity Low_complexity 1 26 0 457 103 243 75 chr4 156975036 156975143 -45353204 + MER44D DNA MER2_type 29 423 -186 1309 146 5 0 chr4 156975154 156975346 -45353001 - AluSq SINE Alu -22 291 99 2365 90 0 7 chr4 156975689 156975989 -45352358 - AluSx SINE Alu -14 298 1 2234 132 6 0 chr4 156976132 156976459 -45351888 + L1PA15 LINE L1 5837 6165 0 2305 104 0 3 chr4 156976928 156977235 -45351112 + AluSx SINE Alu 1 306 -6 2054 141 0 0 chr4 156977573 156977856 -45350491 - AluSx SINE Alu -29 283 1 882 155 61 0 chr4 156977861 156978009 -45350338 + MER44D DNA MER2_type 448 604 -1 1562 206 30 0 chr4 156978325 156978621 -45349726 + AluJb SINE Alu 1 305 -7 475 243 96 72 chr4 156978626 156978739 -45349608 + L2 LINE L2 2234 2343 -971 2812 142 116 0 chr4 156978739 156978907 -45349440 + LTR44 LTR ERV1 1 148 -371 2059 133 0 3 chr4 156978907 156979207 -45349140 - AluSx SINE Alu -13 299 1 2812 142 116 0 chr4 156979207 156979503 -45348844 + LTR44 LTR ERV1 148 519 0 475 243 96 72 chr4 156979503 156979614 -45348733 + L2 LINE L2 2343 2467 -847 2333 112 0 3 chr4 156979614 156979927 -45348420 - AluSq SINE Alu -1 312 1 475 243 96 72 chr4 156979927 156979952 -45348395 + L2 LINE L2 2467 2490 -824 201 317 130 37 chr4 156980062 156980223 -45348124 - L2 LINE L2 -14 3299 3124 1554 144 92 69 chr4 156980271 156980631 -45347716 + THE1C LTR MaLR 1 368 -7 250 61 0 0 chr4 156981151 156981184 -45347163 - Alu SINE Alu -8 293 261 1767 128 0 4 chr4 156981330 156981573 -45346774 - AluSx SINE Alu -64 248 7 479 306 8 8 chr4 156981600 156981724 -45346623 + MER5B DNA MER1_type 50 173 -5 1728 186 3 13 chr4 156981782 156982093 -45346254 + AluJo SINE Alu 5 312 0 1763 148 3 35 chr4 156982200 156982510 -45345837 - AluSx SINE Alu -12 300 1 2391 82 3 7 chr4 156982883 156983188 -45345159 + AluY SINE Alu 1 304 -7 1482 186 43 25 chr4 156983402 156983682 -45344665 - AluJo SINE Alu -27 285 1 12318 52 3 0 chr4 156983727 156984106 -45344241 - L1PA5 LINE L1 0 6154 5778 2569 59 3 0 chr4 156984106 156984409 -45343938 - AluY SINE Alu -7 304 1 12318 52 3 0 chr4 156984409 156986256 -45342091 - L1PA5 LINE L1 -376 5778 3934 2145 90 7 0 chr4 156986384 156986662 -45341685 + AluSx SINE Alu 1 280 -32 533 286 36 0 chr4 156986883 156987051 -45341296 - L1ME LINE L1 -336 5785 5612 2125 124 0 0 chr4 156987155 156987469 -45340878 - AluSx SINE Alu 0 314 1 2218 119 0 0 chr4 156987481 156987800 -45340547 - AluSq SINE Alu 0 319 1 2298 101 0 3 chr4 156987803 156988109 -45340238 - AluSx SINE Alu -7 305 1 2349 232 48 18 chr4 156988143 156988773 -45339574 - L2 LINE L2 -556 2758 2110 383 224 14 98 chr4 156988770 156988913 -45339434 - MIR SINE MIR -20 242 112 * 2614 253 101 25 chr4 156988913 156989798 -45338549 - Charlie2a DNA MER1_type -1910 952 1 2378 76 0 17 chr4 156990360 156990661 -45337686 + AluSg SINE Alu 1 296 -14 186 279 0 0 chr4 156990686 156990729 -45337618 + L3 LINE CR1 327 369 -1208 617 258 43 118 chr4 156990797 156990989 -45337358 - L1ME4a LINE L1 -223 5898 5693 716 207 6 71 chr4 156990989 156991158 -45337189 + FAM SINE Alu 1 158 -17 617 258 43 118 chr4 156991158 156991171 -45337176 - L1ME4a LINE L1 -428 5693 5681 1955 126 29 0 chr4 156991171 156991448 -45336899 - AluJb SINE Alu -14 298 14 617 258 43 118 chr4 156991448 156991683 -45336664 - L1ME4a LINE L1 -440 5681 5490 1076 121 12 0 chr4 156991715 156991881 -45336466 - L1MB4 LINE L1 0 6180 6013 373 258 21 0 chr4 156991986 156992083 -45336264 - MLT1I LTR MaLR 0 409 311 445 136 0 0 chr4 156992194 156992253 -45336094 - AluSq SINE Alu -110 203 145 419 214 29 19 chr4 156992253 156992356 -45335991 + LTR24B LTR ERV1 466 569 -7 342 88 0 53 chr4 156992433 156992490 -45335857 - AluJo SINE Alu -166 136 83 660 140 0 0 chr4 156992517 156992610 -45335737 + AluJ/FLAM SINE Alu 2 94 -218 2298 104 7 0 chr4 156992638 156992935 -45335412 + AluSx SINE Alu 1 299 -13 4333 118 33 47 chr4 156992935 156993665 -45334682 - Tigger1 DNA MER2_type -109 2309 1590 1812 134 0 0 chr4 156993671 156993918 -45334429 - AluSx SINE Alu -65 247 1 2445 69 0 0 chr4 156994003 156994306 -45334041 - AluY SINE Alu -8 303 1 415 252 61 27 chr4 156994694 156994841 -45333506 - MER20B DNA MER1_type -618 165 14 306 0 0 0 chr4 156995111 156995145 -45333202 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4461 97 11 27 chr4 156995302 156995761 -45332586 + MER41B LTR ERV1 1 466 -169 1758 154 0 14 chr4 156995761 156996041 -45332306 + AluSx SINE Alu 1 276 -36 645 80 0 0 chr4 156996041 156996129 -45332218 + (GA)n Simple_repeat Simple_repeat 1 88 0 4461 97 11 27 chr4 156996129 156996306 -45332041 + MER41B LTR ERV1 464 628 -7 259 128 64 0 chr4 156996844 156996891 -45331456 - MSTC LTR MaLR 0 428 379 2518 56 10 0 chr4 156996922 156997228 -45331119 - AluY SINE Alu -2 309 1 1396 139 32 36 chr4 156997255 156997506 -45330841 - MSTC LTR MaLR -178 250 1 2035 95 74 24 chr4 156997591 156997887 -45330460 - AluSp SINE Alu -2 311 1 1473 66 6 6 chr4 156998771 156998952 -45329395 + AluSp SINE Alu 1 181 -132 2956 186 35 11 chr4 156999463 157000000 -45328347 + MER68 LTR ERV1 11 560 -2 953 207 114 96 chr4 157000004 157000126 -45328221 + LTR41 LTR ERVL 7 125 -648 1546 169 3 49 chr4 157000126 157000434 -45327913 + AluJb SINE Alu 1 294 -18 2112 116 0 7 chr4 157000442 157000735 -45327612 + AluSx SINE Alu 1 291 -21 953 207 114 96 chr4 157000735 157001245 -45327102 + LTR41 LTR ERVL 131 750 -23 307 291 151 20 chr4 157001663 157001914 -45326433 + L2 LINE L2 2032 2315 -999 2143 123 10 0 chr4 157002481 157002774 -45325573 + AluSx SINE Alu 1 296 -16 2122 125 0 13 chr4 157002981 157003149 -45325198 - AluSg SINE Alu -11 299 135 2449 73 13 0 chr4 157003149 157003452 -45324895 - AluSp SINE Alu -6 307 1 2122 125 0 13 chr4 157003452 157003586 -45324761 - AluSg SINE Alu -175 135 1 846 127 0 45 chr4 157003815 157003949 -45324398 + MER20B DNA MER1_type 91 218 -1 651 278 129 4 chr4 157004282 157004537 -45323810 - L2 LINE L2 -570 2744 2458 234 62 0 0 chr4 157004697 157004729 -45323618 + (T)n Simple_repeat Simple_repeat 1 32 0 304 306 62 17 chr4 157005557 157005735 -45322612 - MIR SINE MIR -50 212 28 2032 142 7 0 chr4 157006178 157006527 -45321820 - AluSx SINE Alu 0 351 1 1472 46 0 0 chr4 157006655 157006830 -45321517 + L1P LINE L1 3934 4108 -2038 370 219 26 171 chr4 157006981 157007209 -45321138 - MLT1I LTR MaLR -56 353 159 2060 126 0 0 chr4 157007241 157007548 -45320799 + AluY SINE Alu 4 311 0 4048 219 57 27 chr4 157007730 157008792 -45319555 + L1M4 LINE L1 351 1444 -5242 2350 82 0 13 chr4 157008826 157009130 -45319217 + AluY SINE Alu 1 300 -11 2231 99 0 0 chr4 157009134 157009441 -45318906 + AluSq SINE Alu 1 307 0 2024 113 20 20 chr4 157009450 157009752 -45318595 + AluSx SINE Alu 1 302 -10 2031 234 37 2 chr4 157009759 157010306 -45318041 + L1M4 LINE L1 2851 3416 -3372 982 128 0 0 chr4 157010308 157010441 -45317906 + AluSq/x SINE Alu 1 133 -179 2134 119 3 7 chr4 157010443 157010736 -45317611 + AluSc SINE Alu 1 292 -17 1050 243 60 49 chr4 157010777 157011261 -45317086 + L1M4 LINE L1 3671 4163 -2625 1544 194 10 42 chr4 157011261 157011571 -45316776 + AluJo SINE Alu 1 300 -12 1050 243 60 49 chr4 157011571 157011634 -45316713 + L1M4 LINE L1 4163 4224 -2564 1583 127 0 4 chr4 157011697 157011925 -45316422 + AluSc SINE Alu 82 308 -1 1347 279 84 20 chr4 157011944 157012395 -45315952 + L1M4 LINE L1 162 641 -6148 2243 103 10 0 chr4 157012465 157012756 -45315591 + AluSx SINE Alu 1 294 -18 232 222 0 16 chr4 157012758 157012821 -45315526 + L1MA6 LINE L1 5959 6020 -280 1353 198 10 26 chr4 157012836 157013149 -45315198 + L1MA6 LINE L1 5988 6295 -5 5526 218 34 32 chr4 157013158 157014176 -45314171 + L1M4 LINE L1 4212 5226 -1562 1651 136 26 33 chr4 157014176 157014478 -45313869 + AluSx SINE Alu 1 300 -12 5526 218 34 32 chr4 157014478 157014717 -45313630 + L1M4 LINE L1 5226 5463 -1325 2136 152 0 0 chr4 157014717 157015027 -45313320 - AluJb SINE Alu -2 310 1 5526 218 34 32 chr4 157015027 157015040 -45313307 + L1M4 LINE L1 5463 5474 -1314 2587 53 3 0 chr4 157015040 157015340 -45313007 - AluY SINE Alu -10 301 1 5526 218 34 32 chr4 157015340 157015578 -45312769 + L1M4 LINE L1 5474 5726 -1062 806 196 18 6 chr4 157015578 157015741 -45312606 - L1MC1 LINE L1 0 6333 6169 184 30 61 0 chr4 157015745 157015778 -45312569 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 301 261 101 70 chr4 157015901 157016158 -45312189 + LTR24B LTR ERV1 207 471 -105 1731 128 0 31 chr4 157016169 157016426 -45311921 - AluSq SINE Alu -53 260 12 2240 87 0 23 chr4 157016609 157016909 -45311438 + AluSg SINE Alu 1 293 -17 1626 170 42 7 chr4 157018539 157018822 -45309525 - AluJb SINE Alu -19 293 1 801 176 67 94 chr4 157018840 157019107 -45309240 - L1MA10 LINE L1 -51 6283 6024 236 268 73 0 chr4 157019204 157019286 -45309061 + MLT1K LTR MaLR 145 232 -356 935 157 152 5 chr4 157019424 157019615 -45308732 - MER20 DNA MER1_type 0 219 1 2171 88 46 0 chr4 157020822 157021106 -45307241 + AluSq SINE Alu 2 298 -15 2286 92 0 0 chr4 157021109 157021392 -45306955 + AluSc SINE Alu 1 283 -26 2115 104 3 14 chr4 157021423 157021720 -45306627 + AluSg SINE Alu 1 294 -16 2425 53 0 0 chr4 157021720 157022027 -45306320 + AluY SINE Alu 1 307 0 434 206 0 0 chr4 157022093 157022166 -45306181 + 5S rRNA rRNA 1 73 -48 446 333 163 15 chr4 157022215 157023132 -45305215 + L2 LINE L2 1780 2831 -483 192 324 49 42 chr4 157023209 157023351 -45304996 + L2 LINE L2 2926 3068 -204 21 0 0 0 chr4 157023572 157023593 -45304754 + AT_rich Low_complexity Low_complexity 1 21 0 563 221 41 58 chr4 157023613 157023702 -45304645 - MIR SINE MIR -20 242 155 2258 89 3 0 chr4 157023702 157024015 -45304332 - AluSp SINE Alu 0 314 1 563 221 41 58 chr4 157024015 157024096 -45304251 - MIR SINE MIR -107 155 74 2241 94 13 10 chr4 157024180 157024487 -45303860 + AluSg SINE Alu 1 308 -2 2334 98 3 7 chr4 157024727 157025034 -45303313 + AluSq SINE Alu 2 307 -6 397 281 46 25 chr4 157025118 157025314 -45303033 - MIR SINE MIR 0 262 63 537 16 0 0 chr4 157025681 157025743 -45302604 + (TG)n Simple_repeat Simple_repeat 2 63 0 253 206 196 0 chr4 157026425 157026532 -45301815 + L1ME3A LINE L1 5819 5946 -224 229 302 47 23 chr4 157027125 157027211 -45301136 + MIR SINE MIR 28 115 -147 1632 111 0 37 chr4 157027217 157027460 -45300887 + AluSg/x SINE Alu 65 298 -14 2140 121 0 10 chr4 157027659 157027957 -45300390 - AluSx SINE Alu -17 295 1 265 310 88 12 chr4 157027968 157028139 -45300208 - MIR SINE MIR -14 248 65 2262 120 3 0 chr4 157028174 157028473 -45299874 - AluSc SINE Alu -9 300 1 1907 133 42 0 chr4 157028832 157029117 -45299230 - AluSx SINE Alu -15 297 1 200 290 14 12 chr4 157029283 157029366 -45298981 - MIR SINE MIR -68 140 69 2054 125 19 32 chr4 157029631 157029944 -45298403 - AluSx SINE Alu -3 309 1 2064 112 45 3 chr4 157031102 157031388 -45296959 + AluSq SINE Alu 1 298 -15 1187 63 0 0 chr4 157031695 157031837 -45296510 + AluSp/q SINE Alu 165 306 -7 217 132 0 0 chr4 157032069 157032107 -45296240 + (TG)n Simple_repeat Simple_repeat 2 39 0 210 71 0 0 chr4 157032421 157032449 -45295898 + (A)n Simple_repeat Simple_repeat 1 28 0 1110 166 75 5 chr4 157032762 157032949 -45295398 + Tigger7 DNA MER2_type 18 217 -2270 663 156 18 18 chr4 157032952 157033061 -45295286 + Tigger7 DNA MER2_type 2478 2586 -1 195 69 0 0 chr4 157033298 157033327 -45295020 + (GA)n Simple_repeat Simple_repeat 2 30 0 2147 108 7 10 chr4 157033481 157033786 -45294561 - AluSx SINE Alu -8 304 1 1731 96 0 0 chr4 157034351 157034569 -45293778 + AluSp SINE Alu 81 298 -15 912 140 13 6 chr4 157034632 157034789 -45293558 - L1MB8 LINE L1 0 6178 6021 36 0 0 0 chr4 157034951 157034987 -45293360 + AT_rich Low_complexity Low_complexity 1 36 0 2070 122 20 0 chr4 157034987 157035282 -45293065 + AluSx SINE Alu 1 301 -11 233 229 33 0 chr4 157035538 157035599 -45292748 - MIR SINE MIR -109 153 91 849 122 55 118 chr4 157035644 157035722 -45292625 - MER33 DNA MER1_type -2272 313 232 835 203 0 0 chr4 157035722 157035875 -45292472 + FAM SINE Alu 5 157 -18 849 122 55 118 chr4 157035875 157036033 -45292314 - MER33 DNA MER1_type -2353 232 92 2090 127 0 3 chr4 157036049 157036340 -45292007 - AluSx SINE Alu -22 290 1 272 235 15 0 chr4 157036346 157036414 -45291933 - MER33 DNA MER1_type -224 100 32 207 319 42 83 chr4 157036497 157036713 -45291634 - MIR SINE MIR -8 254 48 1950 161 0 0 chr4 157037308 157037606 -45290741 - AluJo SINE Alu -13 299 2 2036 156 0 0 chr4 157038296 157038598 -45289749 - AluSx SINE Alu -10 302 1 2269 67 7 7 chr4 157038790 157039120 -45289227 - AluY SINE Alu 0 330 1 286 229 66 0 chr4 157039398 157039459 -45288888 - MER5B DNA MER1_type 0 178 114 2351 80 7 0 chr4 157039606 157039892 -45288455 - AluSc SINE Alu -13 296 9 198 0 0 0 chr4 157039892 157039914 -45288433 + (GCCTG)n Simple_repeat Simple_repeat 4 25 0 307 330 0 0 chr4 157039916 157040010 -45288337 - MER5B DNA MER1_type -78 100 7 1843 166 3 19 chr4 157040037 157040350 -45287997 - AluSx SINE Alu -4 308 1 2076 139 0 3 chr4 157040824 157041125 -45287222 - AluSx SINE Alu -12 300 1 181 115 19 19 chr4 157041600 157041652 -45286695 + (TG)n Simple_repeat Simple_repeat 2 53 0 1970 158 0 0 chr4 157041808 157042106 -45286241 + AluJb SINE Alu 1 298 -14 497 163 51 20 chr4 157042195 157042293 -45286054 + MER2 DNA MER2_type 1 101 -244 1878 113 25 32 chr4 157042296 157042579 -45285768 + AluSx SINE Alu 1 281 -31 747 139 9 0 chr4 157042717 157042825 -45285522 - AluSq/x SINE Alu -202 110 2 924 211 29 0 chr4 157042862 157043033 -45285314 + AluJo SINE Alu 107 282 -30 318 26 0 0 chr4 157043036 157043075 -45285272 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 242 270 0 0 chr4 157043104 157043167 -45285180 + MER94 DNA DNA 72 134 0 226 156 22 22 chr4 157043583 157043628 -45284719 - MLT1K LTR MaLR -404 184 140 2363 102 0 0 chr4 157043979 157044283 -45284064 - AluSg SINE Alu -6 304 1 2165 113 3 10 chr4 157044283 157044607 -45283740 - AluSx SINE Alu 0 312 1 290 229 57 0 chr4 157045439 157045509 -45282838 + L2 LINE L2 3221 3294 -19 2328 101 0 22 chr4 157045533 157045849 -45282498 - AluSg SINE Alu 0 310 2 2335 102 0 13 chr4 157046129 157046442 -45281905 + AluSx SINE Alu 1 309 -3 460 135 0 0 chr4 157046515 157046586 -45281761 - L1MB3 LINE L1 -52 6131 6058 226 278 24 87 chr4 157046851 157046977 -45281370 + MLT1K LTR MaLR 324 441 -147 722 226 149 65 chr4 157047211 157047520 -45280827 + MLT1J LTR MaLR 1 335 -176 247 176 29 108 chr4 157047550 157047652 -45280695 + MLT1J LTR MaLR 412 505 -6 373 325 115 48 chr4 157047894 157048536 -45279811 + L2 LINE L2 2292 2976 -338 344 261 95 84 chr4 157048598 157048882 -45279465 + L2 LINE L2 3025 3311 -2 338 316 52 13 chr4 157049109 157049264 -45279083 - MIR SINE MIR -50 212 52 464 216 15 15 chr4 157049653 157049787 -45278560 - L1MB7 LINE L1 -3 6181 6048 807 207 0 0 chr4 157049788 157049923 -45278424 + AluJo SINE Alu 2 136 -176 2094 180 61 11 chr4 157049926 157050371 -45277976 - L1MB7 LINE L1 -131 6053 5587 207 271 14 29 chr4 157050848 157050918 -45277429 + MIR SINE MIR 190 258 -4 2078 88 46 0 chr4 157050964 157051247 -45277100 - AluSx SINE Alu -16 296 1 188 178 0 22 chr4 157052008 157052053 -45276294 + GA-rich Low_complexity Low_complexity 5 48 0 37 0 0 0 chr4 157052101 157052138 -45276209 + GC_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 157052776 157052811 -45275536 + GC_rich Low_complexity Low_complexity 1 35 0 197 279 33 33 chr4 157053747 157053808 -45274539 + L2 LINE L2 3244 3304 -9 269 293 116 30 chr4 157055560 157055724 -45272623 - L2 LINE L2 -421 2893 2716 306 0 0 0 chr4 157056199 157056233 -45272114 + (TG)n Simple_repeat Simple_repeat 1 34 0 245 195 0 0 chr4 157056303 157056344 -45272003 - MIR SINE MIR -130 78 38 301 151 0 19 chr4 157056779 157056832 -45271515 + MER5B DNA MER1_type 1 52 -126 322 344 37 6 chr4 157056853 157057016 -45271331 + MLT1L LTR MaLR 151 318 -297 27 29 0 0 chr4 157057204 157057238 -45271109 + AT_rich Low_complexity Low_complexity 1 34 0 1833 119 27 44 chr4 157057238 157057533 -45270814 - AluSx SINE Alu -22 290 1 493 273 29 105 chr4 157058199 157058348 -45269999 + MIR SINE MIR 3 129 -133 2266 67 0 7 chr4 157058348 157058631 -45269716 + AluY SINE Alu 1 281 -30 493 273 29 105 chr4 157058631 157058719 -45269628 + MIR SINE MIR 129 222 -40 2303 109 0 13 chr4 157058979 157059292 -45269055 + AluSx SINE Alu 1 309 -3 1603 91 23 0 chr4 157059817 157060037 -45268310 - AluSq SINE Alu -14 299 75 453 159 16 8 chr4 157060153 157060279 -45268068 + (TA)n Simple_repeat Simple_repeat 1 127 0 2093 119 6 19 chr4 157060279 157060591 -45267756 - AluSx SINE Alu -4 308 1 377 186 0 14 chr4 157060608 157060678 -45267669 - MER103 DNA DNA -93 73 5 950 196 0 0 chr4 157061024 157061182 -45267165 + FAM SINE Alu 14 171 -14 206 318 73 53 chr4 157061501 157061652 -45266695 - L2 LINE L2 -15 3257 3104 2173 131 3 0 chr4 157062173 157062479 -45265868 - AluSx SINE Alu -5 307 1 1917 110 46 18 chr4 157063692 157063973 -45264374 + AluSx SINE Alu 1 289 -23 351 269 0 0 chr4 157064125 157064203 -45264144 + MIR SINE MIR 47 124 -138 1837 131 50 7 chr4 157064227 157064524 -45263823 - MLT1B LTR MaLR 0 390 81 755 111 0 43 chr4 157064524 157064641 -45263706 + FLAM_C SINE Alu 22 133 -10 263 182 152 0 chr4 157064648 157064714 -45263633 - MLT1B LTR MaLR -307 83 8 1214 119 123 16 chr4 157064764 157065007 -45263340 - L1MA2 LINE L1 0 6304 6036 180 178 0 22 chr4 157065017 157065062 -45263285 + MIR SINE MIR 171 214 -48 2218 102 0 0 chr4 157065237 157065531 -45262816 - AluSc SINE Alu -15 294 1 1123 167 58 25 chr4 157067388 157067628 -45260719 + MIR SINE MIR 15 262 0 2179 92 3 30 chr4 157068350 157068653 -45259694 - AluSg SINE Alu -15 295 1 265 308 65 17 chr4 157069045 157069185 -45259162 + MIR SINE MIR 3 147 -61 465 236 178 58 chr4 157069267 157069475 -45258872 - MIR SINE MIR 0 262 30 2191 115 0 0 chr4 157069675 157069961 -45258386 - AluSx SINE Alu -26 286 1 2240 77 20 10 chr4 157070699 157070996 -45257351 - AluY SINE Alu -11 300 1 248 318 61 76 chr4 157072001 157072199 -45256148 - MER117 DNA MER1_type 0 197 3 642 191 24 8 chr4 157072514 157072640 -45255707 - MER5A DNA MER1_type -61 128 1 266 204 0 0 chr4 157073529 157073583 -45254764 - L1ME4a LINE L1 -1 6120 6067 1676 97 61 4 chr4 157074518 157074746 -45253601 + AluSc SINE Alu 1 241 -68 611 71 24 0 chr4 157075109 157075194 -45253153 - Alu SINE Alu 0 310 224 303 83 108 6 chr4 157076320 157076477 -45251870 + (TA)n Simple_repeat Simple_repeat 1 173 0 359 190 67 43 chr4 157076489 157076836 -45251511 + (TTATA)n Simple_repeat Simple_repeat 1 355 0 201 217 17 74 chr4 157077109 157077284 -45251063 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 * 205 207 32 85 chr4 157077207 157077395 -45250952 + (CATTA)n Simple_repeat Simple_repeat 2 179 0 * 407 193 43 44 chr4 157077300 157077825 -45250522 + (TTATA)n Simple_repeat Simple_repeat 1 524 0 46 33 0 0 chr4 157077825 157077885 -45250462 + AT_rich Low_complexity Low_complexity 1 60 0 312 87 100 9 chr4 157077887 157078218 -45250129 + (TA)n Simple_repeat Simple_repeat 1 361 0 * 415 139 26 38 chr4 157078212 157078480 -45249867 + (TATAA)n Simple_repeat Simple_repeat 1 264 0 25 31 0 0 chr4 157081562 157081594 -45246753 + AT_rich Low_complexity Low_complexity 1 32 0 2210 121 0 7 chr4 157081606 157081904 -45246443 + AluSg SINE Alu 1 296 -14 1725 133 65 7 chr4 157082735 157083013 -45245334 - AluSg SINE Alu -16 294 1 184 327 91 0 chr4 157083079 157083189 -45245158 - MIR3 SINE MIR -30 178 59 225 0 0 0 chr4 157083433 157083458 -45244889 + (T)n Simple_repeat Simple_repeat 1 25 0 1715 186 46 43 chr4 157083461 157083832 -45244515 - MLT1A2 LTR MaLR -2 372 1 303 200 0 17 chr4 157084014 157084074 -45244273 - L2 LINE L2 -5 3267 3209 2236 127 0 0 chr4 157084546 157084853 -45243494 - AluSx SINE Alu -5 307 1 198 167 0 0 chr4 157084962 157084998 -45243349 + (CGTG)n Simple_repeat Simple_repeat 1 36 0 230 0 33 0 chr4 157085011 157085041 -45243306 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2028 110 0 0 chr4 157085062 157085326 -45243021 - AluSq SINE Alu -49 264 1 733 267 31 85 chr4 157085348 157085797 -45242550 - L1ME LINE L1 -402 5743 5319 377 276 7 14 chr4 157086146 157086291 -45242056 - L1ME LINE L1 -5345 774 631 2052 88 50 7 chr4 157086309 157086592 -45241755 + AluSx SINE Alu 1 295 -17 483 194 0 0 chr4 157086592 157086690 -45241657 + (TG)n Simple_repeat Simple_repeat 1 98 0 29 0 0 0 chr4 157086747 157086776 -45241571 + AT_rich Low_complexity Low_complexity 1 29 0 407 280 33 66 chr4 157086989 157087200 -45241147 + L1MEd LINE L1 407 610 -5509 299 208 56 72 chr4 157087722 157087847 -45240500 - MIR SINE MIR 0 262 140 455 277 115 20 chr4 157087854 157088159 -45240188 - L1ME3A LINE L1 -8 6162 5791 257 148 98 33 chr4 157088159 157088220 -45240127 - MIR SINE MIR -117 145 81 239 286 47 19 chr4 157088225 157088350 -45239997 - L1ME LINE L1 -262 5859 5730 837 209 0 0 chr4 157088530 157088683 -45239664 - FRAM SINE Alu -18 158 6 253 253 274 0 chr4 157088991 157089086 -45239261 + L2 LINE L2 3150 3270 -2 2158 117 6 28 chr4 157089117 157089434 -45238913 - AluSg SINE Alu 0 310 1 324 350 138 0 chr4 157089636 157089759 -45238588 - L2 LINE L2 -1 3271 3132 2401 84 0 7 chr4 157089956 157090266 -45238081 - AluY SINE Alu -3 308 1 212 0 0 35 chr4 157090854 157090883 -45237464 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2023 94 0 0 chr4 157090897 157091152 -45237195 - AluSc SINE Alu -54 255 1 296 133 17 0 chr4 157091317 157091377 -45236970 + (CATCC)n Simple_repeat Simple_repeat 1 61 0 695 155 0 0 chr4 157091871 157091974 -45236373 + AluJb SINE Alu 2 104 -208 935 138 0 44 chr4 157091974 157092133 -45236214 + AluSx SINE Alu 36 187 -125 522 0 0 0 chr4 157092166 157092224 -45236123 + (TC)n Simple_repeat Simple_repeat 2 59 0 324 0 0 0 chr4 157092223 157092259 -45236088 + (TA)n Simple_repeat Simple_repeat 1 36 0 * 4735 199 88 63 chr4 157092276 157092465 -45235882 - L1MDb LINE L1 -4684 1722 1539 1865 135 3 17 chr4 157092465 157092753 -45235594 - AluSx SINE Alu -1 311 28 4735 199 88 63 chr4 157092753 157094234 -45234113 - L1MDb LINE L1 -4867 1539 22 1845 162 20 0 chr4 157094250 157094547 -45233800 - AluSx SINE Alu -9 303 1 203 313 0 24 chr4 157094655 157094738 -45233609 - MIR SINE MIR -73 135 55 275 333 237 17 chr4 157096044 157096335 -45232012 - L3 LINE CR1 -156 1421 1067 2150 137 0 0 chr4 157096444 157096750 -45231597 - AluSx SINE Alu -6 306 1 4187 129 45 10 chr4 157096758 157097442 -45230905 - L1MA4 LINE L1 0 6300 5593 * 6161 92 23 3 chr4 157097436 157099039 -45229308 - L1PA15 LINE L1 -1 6164 4526 874 187 36 24 chr4 157099103 157099269 -45229078 + FRAM SINE Alu 1 162 -14 31 0 0 0 chr4 157099458 157099489 -45228858 + AT_rich Low_complexity Low_complexity 1 31 0 32 57 0 0 chr4 157099829 157099882 -45228465 + AT_rich Low_complexity Low_complexity 1 53 0 952 200 0 0 chr4 157100155 157100310 -45228037 - AluJo SINE Alu -24 288 134 659 322 61 30 chr4 157101698 157102027 -45226320 - L2 LINE L2 -337 2977 2639 1616 144 81 21 chr4 157102379 157102664 -45225683 + 7SLRNA srpRNA srpRNA 10 311 -9 443 325 42 16 chr4 157102901 157103092 -45225255 - MIR SINE MIR -66 196 1 1187 173 53 9 chr4 157103096 157103322 -45225025 - MER1B DNA MER1_type 0 339 104 257 180 45 45 chr4 157103689 157103778 -45224569 - L1ME LINE L1 -686 5435 5347 463 250 70 23 chr4 157104290 157104418 -45223929 - L2 LINE L2 -1 3312 3179 491 291 60 22 chr4 157105109 157105291 -45223056 - MIR SINE MIR 0 262 74 189 0 0 0 chr4 157106063 157106084 -45222263 + (TG)n Simple_repeat Simple_repeat 2 22 0 886 143 8 0 chr4 157106084 157106210 -45222137 - AluJo SINE Alu -185 127 1 1120 134 6 12 chr4 157107307 157107479 -45220868 - AluSg/x SINE Alu -76 236 66 1090 182 124 24 chr4 157107479 157107879 -45220468 - MER6 DNA MER2_type -143 722 3 477 216 26 129 chr4 157108782 157109014 -45219333 + MER102b DNA MER1_type 124 331 -10 254 253 71 40 chr4 157109711 157109810 -45218537 - MIR SINE MIR -80 128 27 2092 125 0 4 chr4 157110668 157110949 -45217398 - AluSx SINE Alu -32 280 1 1129 276 53 29 chr4 157111772 157112152 -45216195 - MER21B LTR ERV1 -163 700 312 306 248 86 53 chr4 157112181 157112385 -45215962 - MER21B LTR ERV1 -400 205 82 1788 158 0 48 chr4 157112813 157113129 -45215218 - AluJo SINE Alu -11 301 1 498 271 36 24 chr4 157113729 157113895 -45214452 + CT-rich Low_complexity Low_complexity 3 170 0 2198 108 0 0 chr4 157114163 157114468 -45213879 - AluY SINE Alu -6 305 1 711 154 231 26 chr4 157114623 157114779 -45213568 - L1MC4 LINE L1 -1164 6878 6691 314 222 49 12 chr4 157114779 157114860 -45213487 + Tigger2a DNA MER2_type 1 84 -350 611 292 65 25 chr4 157114864 157114928 -45213419 - L1MC4 LINE L1 -1292 6750 6690 2138 167 87 8 chr4 157114928 157115330 -45213017 + Tigger2a DNA MER2_type 1 434 0 611 292 65 25 chr4 157115330 157115542 -45212805 - L1MC4 LINE L1 -1352 6690 6463 1833 162 10 7 chr4 157115706 157116008 -45212339 - AluJb SINE Alu -9 303 1 184 180 160 0 chr4 157116175 157116225 -45212122 - MIR SINE MIR -47 215 158 2326 64 3 0 chr4 157116569 157116851 -45211496 + AluY SINE Alu 1 283 -28 423 0 0 0 chr4 157116851 157116898 -45211449 + (CA)n Simple_repeat Simple_repeat 2 48 0 1711 90 32 80 chr4 157117465 157117776 -45210571 + AluY SINE Alu 1 296 -15 423 0 0 0 chr4 157117780 157117827 -45210520 + (CA)n Simple_repeat Simple_repeat 2 48 0 279 326 150 39 chr4 157117901 157118235 -45210112 - L2 LINE L2 -2692 622 252 662 266 29 6 chr4 157118588 157118761 -45209586 + MER45A DNA AcHobo 2 178 0 197 284 171 0 chr4 157118772 157118860 -45209487 - MIR3 SINE MIR -46 162 60 2068 127 48 33 chr4 157118882 157119213 -45209134 + MER1B DNA MER1_type 1 336 -1 1816 166 7 3 chr4 157119290 157119591 -45208756 + AluJb SINE Alu 1 302 -10 2016 156 179 60 chr4 157120098 157120644 -45207703 - LTR36 LTR ERV1 0 611 1 375 309 146 39 chr4 157121097 157121330 -45207017 + MIR SINE MIR 2 259 -3 1132 174 5 36 chr4 157123078 157123302 -45205045 - MLT1B LTR MaLR -173 217 1 414 206 0 0 chr4 157123473 157123565 -45204782 + L2 LINE L2 2590 2681 -633 261 222 83 0 chr4 157123567 157123639 -45204708 + MIR SINE MIR 59 136 -126 911 107 145 128 chr4 157123703 157123937 -45204410 + MLT1D LTR MaLR 1 238 -267 1644 152 3 35 chr4 157123938 157124221 -45204126 + AluJo SINE Alu 1 274 -38 857 143 0 41 chr4 157124221 157124368 -45203979 + MLT1D LTR MaLR 364 504 -1 231 114 0 0 chr4 157126506 157126541 -45201806 + (T)n Simple_repeat Simple_repeat 1 35 0 189 337 148 0 chr4 157126541 157126642 -45201705 + MIR SINE MIR 141 256 -6 449 256 175 58 chr4 157128252 157128475 -45199872 + MIR SINE MIR 14 262 0 236 208 0 0 chr4 157128626 157128679 -45199668 + L1MB8 LINE L1 6126 6178 0 1127 222 18 9 chr4 157129541 157129762 -45198585 + MER58A DNA MER1_type 1 223 -1 1252 191 25 4 chr4 157130273 157130508 -45197839 + L1MB3 LINE L1 5340 5579 -601 3024 157 51 18 chr4 157130677 157131226 -45197121 + L1MB3 LINE L1 5587 6153 -30 7864 172 106 22 chr4 157131744 157133363 -45194984 + MER52A LTR ERV1 1 1755 0 2226 54 25 4 chr4 157133858 157134168 -45194179 - AluY SINE Alu 0 316 1 853 270 113 63 chr4 157134578 157134755 -45193592 - L2 LINE L2 -5 3308 3141 2211 124 0 3 chr4 157134755 157135069 -45193278 + AluSq SINE Alu 1 313 0 853 270 113 63 chr4 157135069 157135351 -45192996 - L2 LINE L2 -172 3141 2826 429 237 102 0 chr4 157135339 157135457 -45192890 - L2 LINE L2 -751 2563 2434 * 2058 113 4 0 chr4 157137186 157137460 -45190887 + AluSx SINE Alu 10 284 -28 1749 144 108 24 chr4 157137566 157137899 -45190448 - MER46B DNA MER2_type 0 236 1 180 0 0 0 chr4 157138625 157138645 -45189702 + (A)n Simple_repeat Simple_repeat 1 20 0 772 189 4 121 chr4 157139520 157139768 -45188579 + MER20 DNA MER1_type 1 219 0 2290 89 3 0 chr4 157139830 157140123 -45188224 - AluSx SINE Alu -17 295 2 262 181 39 20 chr4 157140187 157140394 -45187953 + (TA)n Simple_repeat Simple_repeat 1 211 0 3294 246 139 32 chr4 157140813 157142157 -45186190 - L1ME LINE L1 -433 6526 5327 1758 155 3 48 chr4 157142157 157142467 -45185880 + AluJo SINE Alu 1 296 -16 3294 246 139 32 chr4 157142467 157143750 -45184597 - L1ME LINE L1 -1632 5327 3545 431 253 153 8 chr4 157143781 157144027 -45184320 - L1ME LINE L1 -3728 3213 2971 815 176 0 0 chr4 157144046 157144171 -45184176 - FLAM_C SINE Alu -18 125 1 309 226 110 52 chr4 157144178 157144333 -45184014 - L1ME LINE L1 -4000 2941 2778 1492 94 54 0 chr4 157144636 157144839 -45183508 - AluY SINE Alu -15 296 83 429 288 96 41 chr4 157144860 157145487 -45182860 - L1MEc LINE L1 -4565 2527 1702 * 554 97 86 21 chr4 157145483 157145576 -45182771 - THE1-int LTR MaLR -1410 170 72 595 171 86 41 chr4 157145615 157145764 -45182583 - THE1C LTR MaLR -208 167 36 948 278 54 27 chr4 157145854 157146077 -45182270 - L1MEc LINE L1 -5984 439 199 342 107 0 0 chr4 157146077 157146133 -45182214 + (TG)n Simple_repeat Simple_repeat 2 57 0 948 278 54 27 chr4 157146133 157146316 -45182031 - L1MEc LINE L1 -6224 199 22 190 300 0 0 chr4 157147311 157147351 -45180996 + L2 LINE L2 3249 3288 -25 234 0 0 0 chr4 157147588 157147614 -45180733 + (CAA)n Simple_repeat Simple_repeat 1 26 0 613 136 0 0 chr4 157147620 157147701 -45180646 - FLAM_C SINE Alu -27 116 36 23 0 0 0 chr4 157147793 157147816 -45180531 + AT_rich Low_complexity Low_complexity 1 23 0 421 308 73 49 chr4 157148985 157149142 -45179205 + L2 LINE L2 2621 2788 -526 1637 142 105 119 chr4 157149142 157149214 -45179133 - MSTA LTR MaLR 0 428 357 2022 108 3 46 chr4 157149214 157149521 -45178826 + AluSx SINE Alu 1 294 -18 1637 142 105 119 chr4 157149521 157149878 -45178469 - MSTA LTR MaLR -71 357 5 421 308 73 49 chr4 157149878 157149967 -45178380 + L2 LINE L2 2788 2873 -441 5100 145 44 19 chr4 157150070 157150987 -45177360 - L1MC1 LINE L1 -9 6324 5385 13144 28 1 0 chr4 157151000 157153274 -45175073 - L1PA3 LINE L1 0 6155 3879 562 156 11 0 chr4 157153374 157153464 -45174883 + AluSp/q SINE Alu 214 304 -9 198 0 0 0 chr4 157154391 157154413 -45173934 + (TTTTTA)n Simple_repeat Simple_repeat 3 24 0 2061 116 0 34 chr4 157154417 157154737 -45173610 - AluSx SINE Alu -3 309 1 231 311 67 11 chr4 157155032 157155122 -45173225 - L2 LINE L2 -359 2955 2861 1958 133 17 0 chr4 157155159 157155459 -45172888 - AluSx SINE Alu -5 307 3 2105 142 10 0 chr4 157155459 157155768 -45172579 - AluSx SINE Alu 0 312 1 207 69 0 0 chr4 157155932 157155961 -45172386 + (GCTG)n Simple_repeat Simple_repeat 1 29 0 861 231 78 22 chr4 157155997 157156266 -45172081 - MLT1H LTR MaLR -258 291 8 688 161 23 23 chr4 157156458 157156588 -45171759 + L1MC1 LINE L1 6204 6333 0 363 286 105 42 chr4 157156718 157156956 -45171391 + MIR SINE MIR 2 254 -8 223 281 58 58 chr4 157157973 157158094 -45170253 + MIR3 SINE MIR 40 160 -48 1896 162 3 7 chr4 157158354 157158663 -45169684 + AluSg SINE Alu 1 308 -2 2224 111 0 7 chr4 157158916 157159213 -45169134 + AluSx SINE Alu 1 295 -17 2045 143 34 45 chr4 157159353 157159732 -45168615 - THE1C LTR MaLR 0 375 1 641 228 54 33 chr4 157159732 157159916 -45168431 - MIR SINE MIR -35 227 40 2245 85 10 7 chr4 157160044 157160337 -45168010 + AluSx SINE Alu 1 294 -18 360 296 78 44 chr4 157160703 157160909 -45167438 - L2 LINE L2 -7 3306 3094 513 214 144 108 chr4 157161444 157161887 -45166460 - L1MC5 LINE L1 -30 7931 7473 2158 116 3 0 chr4 157162684 157162977 -45165370 - AluSc SINE Alu -11 298 5 231 220 80 0 chr4 157163307 157163357 -45164990 - L2 LINE L2 -9 3263 3210 268 136 51 17 chr4 157163452 157163511 -45164836 - L2 LINE L2 -212 3060 3000 2238 99 0 17 chr4 157163759 157163924 -45164423 - AluSq SINE Alu -16 297 138 2083 114 3 13 chr4 157163924 157164231 -45164116 - AluSg SINE Alu -6 304 1 2238 99 0 17 chr4 157164231 157164367 -45163980 - AluSq SINE Alu -175 138 1 404 89 0 208 chr4 157165324 157165391 -45162956 + MADE1 DNA Mariner 1 42 -38 1961 151 0 7 chr4 157165391 157165696 -45162651 - AluSx SINE Alu -7 305 3 404 89 0 208 chr4 157165696 157165729 -45162618 + MADE1 DNA Mariner 42 80 0 636 177 158 19 chr4 157165857 157166015 -45162332 + MER5A DNA MER1_type 10 189 0 24 0 0 0 chr4 157167216 157167240 -45161107 + AT_rich Low_complexity Low_complexity 1 24 0 2291 116 0 0 chr4 157167247 157167548 -45160799 + AluSg SINE Alu 3 303 -7 1616 220 143 52 chr4 157167709 157168045 -45160302 + HsTC2a DNA Tc2 72 376 -1524 1944 159 55 25 chr4 157168045 157168409 -45159938 + THE1C LTR MaLR 1 375 0 1616 220 143 52 chr4 157168409 157168686 -45159661 + HsTC2a DNA Tc2 376 741 -3 651 126 53 117 chr4 157168880 157169066 -45159281 - MSTC LTR MaLR 0 428 164 1509 190 14 17 chr4 157169066 157169356 -45158991 + AluJo SINE Alu 1 289 -23 651 126 53 117 chr4 157169356 157169413 -45158934 - MSTC LTR MaLR -264 164 105 719 214 12 6 chr4 157169571 157169739 -45158608 + LTR16B LTR ERVL 294 462 -2 237 214 86 14 chr4 157169880 157169950 -45158397 - L2 LINE L2 -5 3308 3234 2210 105 20 3 chr4 157170150 157170455 -45157892 - AluSx SINE Alu -2 310 1 22 0 0 0 chr4 157171013 157171035 -45157312 + AT_rich Low_complexity Low_complexity 1 22 0 1088 277 142 51 chr4 157172142 157172648 -45155699 - LTR67 LTR ERVL -2 555 4 852 186 0 25 chr4 157173104 157173265 -45155082 + FRAM SINE Alu 1 156 -20 973 193 16 10 chr4 157173338 157173530 -45154817 - AluJb SINE Alu -33 279 87 560 61 0 12 chr4 157173866 157173948 -45154399 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 973 348 88 29 chr4 157174817 157175670 -45152677 - L3 LINE CR1 -2 1575 673 976 275 9 0 chr4 157175731 157175953 -45152394 + MER58A DNA MER1_type 1 224 0 22 35 0 0 chr4 157176585 157176614 -45151733 + AT_rich Low_complexity Low_complexity 1 29 0 1886 137 3 14 chr4 157176731 157177015 -45151332 - AluSx SINE Alu -31 281 1 753 323 150 47 chr4 157177775 157178294 -45150053 + L2 LINE L2 1356 1820 -1493 2295 74 47 0 chr4 157178294 157178593 -45149754 - AluSp SINE Alu 0 313 1 753 323 150 47 chr4 157178593 157178975 -45149372 + L2 LINE L2 1820 2161 -1152 2946 96 32 2 chr4 157178975 157179383 -45148964 - L1MA2 LINE L1 0 6304 5885 753 323 150 47 chr4 157179383 157180215 -45148132 + L2 LINE L2 2161 3273 -40 230 173 19 19 chr4 157182435 157182487 -45145860 - L2 LINE L2 -1 3312 3261 210 212 329 0 chr4 157183199 157183284 -45145063 + MIR SINE MIR 41 153 -55 21 0 0 0 chr4 157184016 157184037 -45144310 + AT_rich Low_complexity Low_complexity 1 21 0 6794 73 12 0 chr4 157184709 157185525 -45142822 + LTR12 LTR ERV1 1 826 0 1288 148 171 16 chr4 157186035 157186292 -45142055 - AluJo SINE Alu -15 297 1 2488 77 0 3 chr4 157188711 157189023 -45139324 + AluY SINE Alu 1 311 0 646 239 51 35 chr4 157189175 157189372 -45138975 - MIR SINE MIR -23 239 40 1057 124 25 0 chr4 157190343 157190504 -45137843 - AluSg/x SINE Alu -14 298 134 2141 82 17 10 chr4 157190504 157190795 -45137552 - AluSc SINE Alu -16 293 1 2404 82 20 0 chr4 157191166 157191470 -45136877 - AluY SINE Alu -1 310 1 1889 75 46 0 chr4 157191955 157192196 -45136151 - L1PA7 LINE L1 0 6154 5903 2048 127 17 0 chr4 157193392 157193683 -45134664 + AluSx SINE Alu 1 296 -16 2190 103 0 3 chr4 157193756 157194046 -45134301 + AluSx SINE Alu 1 289 -23 2182 112 0 7 chr4 157194581 157194877 -45133470 + AluSg SINE Alu 1 294 -16 802 154 0 8 chr4 157195644 157195761 -45132586 - FLAM_C SINE Alu -26 117 2 702 224 41 93 chr4 157195871 157196086 -45132261 - MIR SINE MIR -25 237 35 2149 133 3 0 chr4 157196086 157196394 -45131953 - AluSq SINE Alu -4 309 1 702 224 41 93 chr4 157196394 157196424 -45131923 - MIR SINE MIR -227 35 5 354 296 238 25 chr4 157196978 157197588 -45130759 - L2 LINE L2 -177 3095 2328 2789 110 6 6 chr4 157197588 157197952 -45130395 - THE1B LTR MaLR 0 364 1 354 296 238 25 chr4 157197952 157198023 -45130324 - L2 LINE L2 -944 2328 2273 2019 167 44 0 chr4 157198285 157198626 -45129721 + MER46B DNA MER2_type 4 234 -2 2841 278 135 45 chr4 157198635 157199163 -45129184 + L2 LINE L2 655 1134 -2180 1867 143 48 0 chr4 157199163 157199456 -45128891 - AluSx SINE Alu -5 307 1 2841 278 135 45 chr4 157199456 157199979 -45128368 + L2 LINE L2 1134 1609 -1705 2318 98 0 0 chr4 157199979 157200275 -45128072 + AluSx SINE Alu 1 296 -16 2841 278 135 45 chr4 157200275 157200767 -45127580 + L2 LINE L2 1609 2337 -977 276 348 51 22 chr4 157201354 157201492 -45126855 + L2 LINE L2 3171 3312 -1 2145 129 0 0 chr4 157201704 157201999 -45126348 - AluSq SINE Alu -18 295 1 434 248 8 34 chr4 157202243 157202360 -45125987 - MLT1J LTR MaLR -12 499 386 444 253 35 104 chr4 157202460 157202662 -45125685 - MLT1J LTR MaLR -301 210 23 4009 174 43 41 chr4 157202801 157202944 -45125403 + L1MB8 LINE L1 5226 5367 -811 2338 103 0 0 chr4 157202944 157203246 -45125101 + AluSx SINE Alu 1 302 -10 4009 174 43 41 chr4 157203246 157204035 -45124312 + L1MB8 LINE L1 5367 6172 -6 1255 131 117 5 chr4 157204385 157204591 -45123756 + AluSg/x SINE Alu 75 303 -9 285 51 0 0 chr4 157204602 157204641 -45123706 + (TA)n Simple_repeat Simple_repeat 2 40 0 1565 181 34 17 chr4 157204687 157204985 -45123362 - AluJb SINE Alu -4 308 6 1575 164 79 55 chr4 157205415 157205794 -45122553 - MLT1B LTR MaLR 0 390 3 2110 124 3 0 chr4 157205914 157206205 -45122142 + AluSx SINE Alu 2 293 -19 298 222 0 44 chr4 157206210 157206300 -45122047 - L1ME1 LINE L1 -5 6161 6076 1008 193 0 0 chr4 157206393 157206559 -45121788 - FRAM SINE Alu -5 171 6 758 176 51 35 chr4 157206636 157206847 -45121500 - L1ME1 LINE L1 -239 5927 5712 1364 170 4 21 chr4 157207864 157208099 -45120248 + AluJo SINE Alu 1 231 -81 2483 76 0 0 chr4 157210176 157210477 -45117870 - AluY SINE Alu -10 301 1 403 229 0 0 chr4 157210551 157210656 -45117691 + Charlie5 DNA MER1_type 2520 2624 0 397 235 0 84 chr4 157211554 157211610 -45116737 - MER5B DNA MER1_type 0 178 136 1951 136 7 26 chr4 157211610 157211920 -45116427 - AluSx SINE Alu -8 304 1 397 235 0 84 chr4 157211920 157211982 -45116365 - MER5B DNA MER1_type -42 136 70 215 309 79 20 chr4 157212583 157212685 -45115662 + MER5B DNA MER1_type 22 140 -49 2801 0 0 0 chr4 157213689 157213989 -45114358 + AluYa8 SINE Alu 1 300 -10 191 281 0 83 chr4 157214211 157214307 -45114040 + L2 LINE L2 3214 3301 -12 559 284 195 5 chr4 157215951 157216166 -45112181 + MIR SINE MIR 7 262 0 21 0 0 0 chr4 157216250 157216271 -45112076 + AT_rich Low_complexity Low_complexity 1 21 0 1078 241 62 20 chr4 157216959 157217311 -45111036 - LTR40a LTR ERVL -22 497 131 303 315 228 12 chr4 157217526 157218167 -45110180 - L2 LINE L2 -635 2679 1901 289 338 75 12 chr4 157218214 157218374 -45109973 - MIR SINE MIR -79 183 14 268 262 82 69 chr4 157218792 157218953 -45109394 - MIR SINE MIR -69 139 31 686 224 86 6 chr4 157220119 157220293 -45108054 - MIR SINE MIR -16 246 59 203 318 0 15 chr4 157221361 157221427 -45106920 - L2 LINE L2 0 3313 3249 302 239 124 107 chr4 157222942 157223024 -45105323 - MER46C DNA MER2_type 0 338 259 6119 80 48 5 chr4 157223024 157224101 -45104246 + L1PA11 LINE L1 5059 6173 -1 302 239 124 107 chr4 157224101 157224252 -45104095 - MER46C DNA MER2_type -79 259 101 1038 245 47 69 chr4 157224263 157224504 -45103843 - L1M3f LINE L1 -4242 1086 841 961 200 0 0 chr4 157224504 157224669 -45103678 - FAM SINE Alu -6 169 5 1038 245 47 69 chr4 157224669 157224990 -45103357 - L1M3f LINE L1 -4487 841 539 866 352 4 28 chr4 157225303 157225766 -45102581 - L1M3a LINE L1 -5503 452 1 1581 181 17 7 chr4 157225838 157226125 -45102222 + AluJb SINE Alu 5 294 -18 257 281 37 49 chr4 157226252 157226334 -45102013 + L2 LINE L2 3229 3309 -4 2797 16 0 3 chr4 157227598 157227909 -45100438 - AluYb8 SINE Alu -8 310 1 368 113 0 0 chr4 157228059 157228112 -45100235 - MLT1B LTR MaLR -2 388 336 1672 134 108 16 chr4 157228113 157228418 -45099929 + MER1B DNA MER1_type 1 333 -6 1782 164 21 9 chr4 157228432 157228767 -45099580 - MLT1B LTR MaLR -51 339 1 3453 93 15 21 chr4 157228837 157228978 -45099369 + L1PA13 LINE L1 5639 5779 -384 2214 118 3 0 chr4 157228978 157229274 -45099073 + AluSq SINE Alu 1 297 -16 3453 93 15 21 chr4 157229274 157229657 -45098690 + L1PA13 LINE L1 5779 6160 -3 415 179 164 8 chr4 157230164 157230298 -45098049 - L1MC5 LINE L1 -44 7917 7763 258 296 25 0 chr4 157233852 157233933 -45094414 + CT-rich Low_complexity Low_complexity 2 84 0 230 321 57 9 chr4 157236251 157236357 -45091990 - MIR SINE MIR -75 187 77 2000 176 85 22 chr4 157237022 157237475 -45090872 - MER61D LTR ERV1 0 501 1 180 0 0 0 chr4 157238508 157238528 -45089819 + (T)n Simple_repeat Simple_repeat 1 20 0 2115 135 0 0 chr4 157238686 157238983 -45089364 - AluSq SINE Alu -16 297 1 386 251 131 60 chr4 157239084 157239224 -45089123 - L1MC5 LINE L1 -34 7927 7798 1884 101 30 11 chr4 157239224 157239491 -45088856 - AluSq SINE Alu -14 299 28 386 251 131 60 chr4 157239491 157239936 -45088411 - L1MC5 LINE L1 -163 7798 7300 2271 67 3 35 chr4 157239955 157240267 -45088080 + AluY SINE Alu 1 302 -9 319 266 0 13 chr4 157240599 157240678 -45087669 + L2 LINE L2 3193 3270 -43 688 226 83 34 chr4 157240689 157240893 -45087454 + MER20 DNA MER1_type 1 214 -5 309 231 0 51 chr4 157241657 157241735 -45086612 + MIR SINE MIR 3 76 -186 728 195 0 0 chr4 157242915 157243033 -45085314 - FLAM_C SINE Alu -15 118 1 2347 243 46 16 chr4 157243060 157244304 -45084043 - L1ME1 LINE L1 -5 6161 4877 3472 231 94 32 chr4 157244304 157245752 -45082595 - L1ME1 LINE L1 -2238 3908 2371 296 241 95 9 chr4 157245781 157245897 -45082450 - L1ME LINE L1 -442 5679 5554 23 33 0 0 chr4 157246123 157246153 -45082194 + AT_rich Low_complexity Low_complexity 1 30 0 202 281 149 8 chr4 157247276 157247397 -45080950 - MIR SINE MIR -41 221 84 517 29 0 0 chr4 157248043 157248112 -45080235 - L1PA2 LINE L1 0 6155 6087 3150 52 0 0 chr4 157250658 157251046 -45077301 - L1PA5 LINE L1 -4 6150 5763 1965 228 119 21 chr4 157251936 157252711 -45075636 - L1ME3A LINE L1 -51 6119 5269 621 218 71 38 chr4 157253627 157253836 -45074511 - MIR SINE MIR -2 260 39 1915 124 57 0 chr4 157253964 157254247 -45074100 - AluSx SINE Alu -13 299 1 202 278 31 84 chr4 157254471 157254662 -45073685 + L2 LINE L2 2884 3064 -208 1252 228 38 60 chr4 157254902 157255298 -45073049 - MLT1C LTR MaLR -7 460 74 1697 215 67 31 chr4 157255298 157255837 -45072510 + MER74A LTR ERVL 1 558 0 1252 228 38 60 chr4 157255837 157255910 -45072437 - MLT1C LTR MaLR -393 74 1 192 163 0 0 chr4 157256262 157256305 -45072042 + T-rich Low_complexity Low_complexity 1 43 0 188 297 16 0 chr4 157256945 157257009 -45071338 - MIR SINE MIR -122 140 76 572 280 140 21 chr4 157257019 157257298 -45071049 - L2 LINE L2 0 3313 3002 233 320 0 27 chr4 157257300 157257375 -45070972 + MER91A DNA MER1_type 1 73 -123 449 297 91 6 chr4 157257557 157257722 -45070625 - MER8 DNA MER2_type -60 179 1 429 232 10 0 chr4 157258939 157259038 -45069309 + MER58B DNA MER1_type 212 311 -30 272 241 299 0 chr4 157260217 157260354 -45067993 + L2 LINE L2 3131 3308 -5 189 0 0 0 chr4 157260611 157260632 -45067715 + (T)n Simple_repeat Simple_repeat 1 21 0 1935 147 0 22 chr4 157262093 157262405 -45065942 + AluSq SINE Alu 1 305 -8 206 296 72 32 chr4 157262957 157263082 -45065265 - L2 LINE L2 -456 2858 2729 22 35 0 0 chr4 157263606 157263635 -45064712 + AT_rich Low_complexity Low_complexity 1 29 0 380 273 76 15 chr4 157263690 157263822 -45064525 - MIR SINE MIR -111 151 12 2075 128 7 3 chr4 157264045 157264343 -45064004 - AluSq SINE Alu -14 299 1 6074 98 16 3 chr4 157264678 157265595 -45062752 - L1MA3 LINE L1 0 6305 5377 2607 80 43 0 chr4 157265991 157266340 -45062007 - THE1B LTR MaLR 0 364 1 1578 204 35 50 chr4 157266699 157267101 -45061246 - MSTD LTR MaLR 0 396 1 308 349 8 8 chr4 157268143 157268272 -45060075 + L3 LINE CR1 1260 1388 -189 205 305 68 0 chr4 157268399 157268458 -45059889 + L2 LINE L2 3246 3308 -5 255 286 0 0 chr4 157268775 157268838 -45059509 - MIR SINE MIR -1 261 199 182 235 136 37 chr4 157268861 157268942 -45059405 + MIR SINE MIR 1 89 -173 5330 175 28 20 chr4 157268942 157269671 -45058676 - L1PA16 LINE L1 -2 6164 5442 2129 120 131 13 chr4 157269671 157270054 -45058293 + MSTA LTR MaLR 1 428 0 5330 175 28 20 chr4 157270054 157271491 -45056856 - L1PA16 LINE L1 -724 5442 3982 22718 46 7 1 chr4 157271591 157274603 -45053744 - L1P LINE L1 -942 5204 2175 349 221 78 73 chr4 157274721 157274799 -45053548 + L1MC/D LINE L1 5533 5609 -2199 661 185 67 0 chr4 157274799 157274918 -45053429 + FLAM_A SINE Alu 1 127 -6 349 221 78 73 chr4 157274918 157275043 -45053304 + L1MC/D LINE L1 5609 5737 -2071 225 246 53 0 chr4 157275158 157275215 -45053132 + MLT1E LTR MaLR 74 133 -460 1131 188 25 141 chr4 157275250 157275693 -45052654 + MLT1E LTR MaLR 200 626 0 536 232 32 50 chr4 157275788 157275957 -45052390 + L2 LINE L2 2852 3311 -2 695 181 0 24 chr4 157276019 157276146 -45052201 + FLAM_C SINE Alu 2 125 -8 557 281 80 43 chr4 157276671 157277045 -45051302 + MLT1G LTR MaLR 12 399 -191 245 273 45 0 chr4 157277159 157277247 -45051100 + MLT1G LTR MaLR 455 546 -44 648 327 135 49 chr4 157278292 157279026 -45049321 - L3 LINE CR1 -85 1492 696 976 198 9 23 chr4 157279110 157279327 -45049020 + MER20 DNA MER1_type 3 216 -3 993 160 215 18 chr4 157279423 157279805 -45048542 + Charlie1b DNA MER1_type 7 463 -60 2140 133 3 3 chr4 157279841 157280149 -45048198 - AluSx SINE Alu -4 308 1 239 213 49 0 chr4 157280149 157280210 -45048137 + Charlie1b DNA MER1_type 460 523 0 284 364 131 8 chr4 157280210 157280446 -45047901 - L3 LINE CR1 -1071 506 242 268 306 3 24 chr4 157280932 157281040 -45047307 - MIR SINE MIR -33 175 68 180 324 44 0 chr4 157281091 157281159 -45047188 + MIR SINE MIR 104 174 -88 232 138 62 46 chr4 157281189 157281254 -45047093 - L1MC4 LINE L1 -8 8034 7969 353 228 0 71 chr4 157281276 157281403 -45046944 - L1MC4 LINE L1 -143 7899 7782 308 284 284 0 chr4 157281415 157281556 -45046791 + MER5A DNA MER1_type 9 189 0 1212 247 73 27 chr4 157281621 157281910 -45046437 - L1MC4 LINE L1 -377 7665 7348 2019 218 118 15 chr4 157281910 157282442 -45045905 - MLT1G LTR MaLR -3 587 1 1212 247 73 27 chr4 157282442 157282590 -45045757 - L1MC4 LINE L1 -694 7348 7208 2274 82 0 0 chr4 157284140 157284419 -45043928 + AluY SINE Alu 17 295 -16 479 268 24 0 chr4 157286058 157286181 -45042166 + MIR3 SINE MIR 68 193 -15 1681 208 3 3 chr4 157286940 157287238 -45041109 + AluJo SINE Alu 1 298 -14 1808 152 58 44 chr4 157287253 157287616 -45040731 - MER21A LTR ERV1 -19 912 545 1083 133 0 52 chr4 157287617 157287790 -45040557 + AluSx SINE Alu 36 199 -113 1109 174 25 110 chr4 157287791 157288028 -45040319 - MER39 LTR ERV1 -208 499 183 21 0 0 0 chr4 157288202 157288223 -45040124 + AT_rich Low_complexity Low_complexity 1 21 0 386 124 206 21 chr4 157288274 157288371 -45039976 - MER21A LTR ERV1 -779 152 38 291 114 0 0 chr4 157288371 157288415 -45039932 + (TA)n Simple_repeat Simple_repeat 1 44 0 368 317 164 0 chr4 157289506 157289714 -45038633 + MIR SINE MIR 11 252 -10 352 292 123 0 chr4 157290032 157290162 -45038185 - MIR SINE MIR -3 259 114 2291 87 0 47 chr4 157290192 157290513 -45037834 + AluSg SINE Alu 5 310 0 1360 167 9 0 chr4 157290639 157290872 -45037475 - MER46A DNA MER2_type 0 236 2 4024 94 25 18 chr4 157291025 157291632 -45036715 - L1PA10 LINE L1 -16 6152 5542 288 211 0 0 chr4 157291708 157291760 -45036587 - MER5B DNA MER1_type 0 178 127 22 0 0 0 chr4 157292821 157292843 -45035504 + AT_rich Low_complexity Low_complexity 1 22 0 916 74 0 0 chr4 157292902 157293024 -45035323 - L1PA8 LINE L1 -25 6147 6026 241 250 48 24 chr4 157294709 157294793 -45033554 - Charlie8 DNA MER1_type -2215 202 117 521 301 77 0 chr4 157299107 157299263 -45029084 + MIR SINE MIR 77 244 -18 807 229 0 0 chr4 157301630 157301796 -45026551 + AluJb SINE Alu 137 302 -10 875 222 103 29 chr4 157302013 157302256 -45026091 - MIR SINE MIR 0 262 2 37 0 0 0 chr4 157302829 157302866 -45025481 + AT_rich Low_complexity Low_complexity 1 37 0 335 131 16 0 chr4 157302979 157303040 -45025307 - MER116 DNA Mariner -3 77 16 235 127 0 109 chr4 157303198 157303253 -45025094 - MER116 DNA Mariner -30 50 2 473 256 92 72 chr4 157303274 157303295 -45025052 - L1MC4a LINE L1 -1819 5989 5970 1464 176 50 110 chr4 157303295 157303777 -45024570 - MLT2A2 LTR ERVL 0 453 1 473 256 92 72 chr4 157303777 157303962 -45024385 - L1MC4a LINE L1 -1838 5970 5779 453 266 166 26 chr4 157304072 157304301 -45024046 + L1ME4a LINE L1 5846 6106 -15 210 167 62 0 chr4 157304301 157304349 -45023998 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1902 99 13 40 chr4 157305043 157305345 -45023002 - AluSq SINE Alu -19 294 1 351 0 0 0 chr4 157306784 157306823 -45021524 + (TG)n Simple_repeat Simple_repeat 2 40 0 2850 91 5 0 chr4 157307056 157307429 -45020918 + THE1C LTR MaLR 1 375 0 2211 102 0 7 chr4 157308270 157308574 -45019773 + AluSc SINE Alu 1 302 -7 231 228 59 20 chr4 157309976 157310077 -45018270 - L1M4c LINE L1 -4702 1682 1578 277 140 0 0 chr4 157310095 157310145 -45018202 - AluSq SINE Alu 0 308 259 1090 122 0 47 chr4 157310145 157310317 -45018030 - AluSq SINE Alu -149 164 1 363 284 86 26 chr4 157310329 157310597 -45017750 - HAL1 LINE L1 -966 1541 1258 2146 120 0 0 chr4 157311051 157311359 -45016988 - AluSx SINE Alu -4 308 1 597 362 30 6 chr4 157312630 157312959 -45015388 + L2 LINE L2 2152 2488 -826 249 326 22 0 chr4 157313015 157313107 -45015240 + L2 LINE L2 2713 2806 -508 262 319 85 21 chr4 157313390 157313531 -45014816 + L2 LINE L2 3122 3271 -1 676 220 0 0 chr4 157314215 157314333 -45014014 + FLAM_C SINE Alu 2 119 -14 459 182 7 14 chr4 157314333 157314481 -45013866 + (TA)n Simple_repeat Simple_repeat 2 148 0 237 82 41 41 chr4 157314482 157314531 -45013816 - LTR66 LTR ERVL -172 438 390 2362 74 13 0 chr4 157316177 157316486 -45011861 + AluSp SINE Alu 1 313 0 2174 116 0 0 chr4 157318538 157318840 -45009507 - AluSq SINE Alu -11 302 1 539 289 13 0 chr4 157319872 157320021 -45008326 - MER5A DNA MER1_type -1 188 38 195 348 43 26 chr4 157320195 157320310 -45008037 + L2 LINE L2 2934 3050 -222 213 65 0 0 chr4 157320514 157320545 -45007802 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 231 200 0 0 chr4 157320546 157320601 -45007746 + G-rich Low_complexity Low_complexity 1 55 0 1835 137 4 0 chr4 157320606 157320884 -45007463 - AluSx SINE Alu -33 279 1 2359 79 0 0 chr4 157321083 157321388 -45006959 - AluY SINE Alu -4 307 3 230 254 0 32 chr4 157322909 157322972 -45005375 + CT-rich Low_complexity Low_complexity 2 62 0 180 0 0 0 chr4 157323110 157323130 -45005217 + (T)n Simple_repeat Simple_repeat 1 20 0 326 335 68 51 chr4 157323730 157323906 -45004441 - MIR SINE MIR -17 245 67 209 282 84 0 chr4 157325056 157325127 -45003220 + MIR SINE MIR 129 205 -57 2095 117 3 0 chr4 157326124 157326424 -45001923 + AluSx SINE Alu 1 301 -11 893 174 149 20 chr4 157326696 157326891 -45001456 + MER58A DNA MER1_type 1 220 -4 1132 165 11 90 chr4 157327167 157327446 -45000901 - L1MD3 LINE L1 -1 7994 7738 244 298 167 0 chr4 157327621 157327735 -45000612 - MIR SINE MIR -12 250 118 239 211 34 106 chr4 157328147 157328233 -45000114 + MIR SINE MIR 74 153 -55 257 259 94 118 chr4 157328350 157328605 -44999742 + L2 LINE L2 3006 3254 -18 351 156 65 26 chr4 157330329 157330406 -44997941 - MER105 DNA DNA -12 192 113 1062 248 115 3 chr4 157330406 157330701 -44997646 - LTR40a LTR ERVL 0 519 192 292 46 46 31 chr4 157330701 157330766 -44997581 + (GA)n Simple_repeat Simple_repeat 1 66 0 267 149 0 21 chr4 157330769 157330816 -44997531 - MER105 DNA DNA -158 46 1 189 0 0 0 chr4 157331063 157331084 -44997263 + (T)n Simple_repeat Simple_repeat 1 21 0 656 278 99 66 chr4 157336503 157336582 -44991765 - MLT1L LTR MaLR 0 615 540 829 167 0 0 chr4 157336582 157336714 -44991633 + FLAM_A SINE Alu 1 132 -1 656 278 99 66 chr4 157336714 157337059 -44991288 - MLT1L LTR MaLR -75 540 177 210 339 0 0 chr4 157337269 157337331 -44991016 + (CA)n Simple_repeat Simple_repeat 2 63 0 263 314 39 0 chr4 157337389 157337491 -44990856 + MIR SINE MIR 28 133 -129 181 232 36 54 chr4 157337965 157338021 -44990326 - L2 LINE L2 -356 2958 2904 235 357 0 0 chr4 157339112 157339196 -44989151 + L1ME LINE L1 5569 5652 -518 293 311 61 31 chr4 157340935 157341131 -44987216 - L2 LINE L2 -193 3079 2878 460 221 51 127 chr4 157341221 157341474 -44986873 - MER112 DNA MER1_type -9 251 18 326 296 102 42 chr4 157341783 157342051 -44986296 - L2 LINE L2 -214 3058 2808 2146 92 0 0 chr4 157342051 157342334 -44986013 + AluSx SINE Alu 1 283 -29 180 97 0 0 chr4 157342340 157342371 -44985976 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 326 296 102 42 chr4 157342371 157342537 -44985810 - L2 LINE L2 -468 2804 2589 283 283 124 9 chr4 157345864 157345977 -44982370 - MIR SINE MIR -61 201 76 1811 157 122 26 chr4 157346023 157346449 -44981898 + MLT1C LTR MaLR 1 467 0 258 329 99 31 chr4 157346449 157346671 -44981676 + MIR SINE MIR 14 250 -12 543 259 46 94 chr4 157347682 157348052 -44980295 + MLT1H LTR MaLR 119 544 -5 185 197 66 16 chr4 157349178 157349239 -44979108 + MIR SINE MIR 171 234 -28 26 74 0 0 chr4 157351577 157351631 -44976716 + AT_rich Low_complexity Low_complexity 1 54 0 29633 96 37 12 chr4 157352981 157357170 -44971177 + L1PA7 LINE L1 1 4407 -2062 2020 126 7 23 chr4 157357170 157357479 -44970868 + AluSx SINE Alu 1 304 -8 29633 96 37 12 chr4 157357479 157359524 -44968823 + L1PA7 LINE L1 4407 6399 -70 305 280 24 24 chr4 157360064 157360189 -44968158 + MIR SINE MIR 113 237 -25 3779 158 69 67 chr4 157364509 157365149 -44963198 + L1MB4 LINE L1 5089 5734 -446 2477 84 3 3 chr4 157365149 157365460 -44962887 + AluSq SINE Alu 1 311 -2 3779 158 69 67 chr4 157365460 157365905 -44962442 + L1MB4 LINE L1 5734 6177 -3 22 35 0 0 chr4 157366758 157366787 -44961560 + AT_rich Low_complexity Low_complexity 1 29 0 6265 223 12 25 chr4 157367459 157369115 -44959232 - L1PBb LINE L1 -2331 3872 2239 618 216 0 30 chr4 157369115 157369249 -44959098 - AluJb SINE Alu -8 304 175 3019 233 20 45 chr4 157369249 157369443 -44958904 - L1PBb LINE L1 -4329 1874 1677 1842 137 0 90 chr4 157369443 157369786 -44958561 - AluJb SINE Alu 0 312 1 3019 233 20 45 chr4 157369786 157369963 -44958384 - L1PBb LINE L1 -4526 1677 1497 1696 171 10 16 chr4 157369963 157370267 -44958080 - AluJb SINE Alu -10 302 1 2531 63 0 0 chr4 157370269 157370570 -44957777 - AluY SINE Alu -10 301 1 3019 233 20 45 chr4 157370570 157371235 -44957112 - L1PBb LINE L1 -4707 1496 773 297 267 6 0 chr4 157371635 157371786 -44956561 - L1PBb LINE L1 -5326 878 690 * 7262 190 100 12 chr4 157371776 157373207 -44955140 - L1PA15-16 LINE L1 -5290 1559 3 312 248 32 80 chr4 157373212 157373337 -44955010 + MIR SINE MIR 84 202 -60 * 347 303 56 7 chr4 157373327 157373476 -44954871 - MIR SINE MIR -50 158 8 505 251 94 23 chr4 157373840 157374011 -44954336 - MIR SINE MIR -78 184 2 9280 36 3 1 chr4 157376074 157377143 -44951204 - MER11C LTR ERVK 0 1071 1 1598 113 81 0 chr4 157377615 157377862 -44950485 + L1PA15 LINE L1 5730 5996 -169 1293 167 38 19 chr4 157377866 157378114 -44950233 + AluJb SINE Alu 41 296 -16 841 117 22 0 chr4 157378114 157378251 -44950096 + L1PA15 LINE L1 6023 6162 -3 1293 167 38 19 chr4 157378251 157378265 -44950082 + AluJb SINE Alu 296 308 -4 1570 226 29 84 chr4 157378305 157378899 -44949448 - MER68 LTR ERV1 0 562 2 2048 115 10 19 chr4 157379479 157379792 -44948555 - AluSx SINE Alu -2 310 1 536 205 80 26 chr4 157380349 157380500 -44947847 + L1MC5 LINE L1 7755 7913 -48 337 162 0 86 chr4 157381021 157381126 -44947221 - MIR SINE MIR -88 174 79 2331 79 0 3 chr4 157382811 157383101 -44945246 - AluY SINE Alu -20 291 3 1755 163 91 17 chr4 157383755 157384116 -44944231 + MLT1B LTR MaLR 1 388 -2 240 233 90 45 chr4 157385005 157385138 -44943209 + L1M4 LINE L1 2888 3026 -3120 5241 103 37 3 chr4 157386149 157386897 -44941450 + LTR17 LTR ERV1 1 774 -6 7225 42 27 0 chr4 157387015 157388238 -44940109 - L1PA5 LINE L1 0 6154 4917 465 267 169 19 chr4 157388399 157388706 -44939641 - MLT1L LTR MaLR -45 570 218 307 321 108 20 chr4 157388925 157389221 -44939126 + L2 LINE L2 2413 2734 -580 22 0 0 0 chr4 157389846 157389868 -44938479 + AT_rich Low_complexity Low_complexity 1 22 0 680 208 18 12 chr4 157390351 157390519 -44937828 - MER5B DNA MER1_type -3 175 7 214 233 0 0 chr4 157390587 157390630 -44937717 - MER5A DNA MER1_type 0 189 147 503 322 131 21 chr4 157391824 157392159 -44936188 + L2 LINE L2 2932 3303 -10 818 243 157 21 chr4 157392262 157392542 -44935805 + MER58B DNA MER1_type 24 341 0 689 174 8 16 chr4 157392951 157393072 -44935275 + MER82 DNA MER2_type 1 120 -533 2743 139 57 53 chr4 157393072 157393274 -44935073 + LTR26B LTR ERV1 4 204 -327 1680 73 13 47 chr4 157393274 157393508 -44934839 - MER30 DNA MER1_type -4 226 1 2743 139 57 53 chr4 157393508 157393831 -44934516 + LTR26B LTR ERV1 204 531 0 2818 201 15 8 chr4 157393834 157394366 -44933981 + MER82 DNA MER2_type 118 653 0 565 220 0 0 chr4 157394803 157394912 -44933435 - MER45A DNA AcHobo -9 169 61 3749 163 34 7 chr4 157395903 157396670 -44931677 + L1MB2 LINE L1 5180 5964 -219 771 134 52 0 chr4 157396681 157396815 -44931532 + L1MB2 LINE L1 6029 6169 -2 444 229 99 8 chr4 157398412 157398543 -44929804 + MER3 DNA MER1_type 62 204 -5 180 0 0 0 chr4 157399981 157400001 -44928346 + (T)n Simple_repeat Simple_repeat 1 20 0 253 324 125 0 chr4 157400322 157400458 -44927889 - MIR SINE MIR -10 252 100 14608 90 19 2 chr4 157400821 157403664 -44924683 + L1PA8 LINE L1 3285 6171 -1 1998 154 7 0 chr4 157403735 157404041 -44924306 - AluSx SINE Alu -4 308 1 189 286 156 0 chr4 157404714 157404791 -44923556 + MIR SINE MIR 58 146 -62 256 167 91 15 chr4 157404972 157405038 -44923309 + L2 LINE L2 3243 3313 0 3315 235 35 20 chr4 157406395 157407644 -44920703 + L1ME1 LINE L1 39 6234 -1 243 172 69 17 chr4 157407705 157407763 -44920584 - L2 LINE L2 -7 3306 3246 2230 181 106 0 chr4 157409235 157409649 -44918698 + LTR32 LTR ERVL 14 471 0 688 258 39 39 chr4 157410079 157410312 -44918035 - MIR SINE MIR -28 234 2 263 103 0 0 chr4 157412810 157412849 -44915498 - Charlie8 DNA MER1_type -2152 265 227 234 178 22 0 chr4 157412900 157412945 -44915402 - Charlie8 DNA MER1_type -2353 64 19 259 256 100 11 chr4 157413172 157413262 -44915085 + MIR SINE MIR 115 212 -50 2243 100 28 0 chr4 157415150 157415441 -44912906 + AluSx SINE Alu 1 299 -13 260 311 49 57 chr4 157415456 157415578 -44912769 + L2 LINE L2 3192 3312 -1 553 271 184 41 chr4 157417369 157417885 -44910462 - L1MC4a LINE L1 -1902 5906 5317 202 219 24 0 chr4 157418200 157418241 -44910106 + CT-rich Low_complexity Low_complexity 1 42 0 3814 109 70 31 chr4 157418269 157419355 -44908992 + MER11A LTR ERVK 1 1236 0 1822 151 14 0 chr4 157419595 157419874 -44908473 + AluSx SINE Alu 1 283 -29 297 0 0 0 chr4 157419874 157419907 -44908440 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 644 325 40 43 chr4 157419937 157420639 -44907708 - HAL1 LINE L1 -861 1646 947 317 322 77 51 chr4 157420712 157421256 -44907091 - L1MEd LINE L1 -5451 668 59 222 295 104 58 chr4 157421782 157421955 -44906392 + MIR SINE MIR 58 238 -24 2876 140 62 6 chr4 157424683 157425169 -44903178 + L1MB2 LINE L1 5656 6168 -3 207 0 0 0 chr4 157425229 157425252 -44903095 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2169 92 3 11 chr4 157425254 157425536 -44902811 - AluSx SINE Alu -32 280 1 2511 60 0 28 chr4 157426428 157426770 -44901577 - AluY SINE Alu 0 333 1 1780 177 20 3 chr4 157428556 157428855 -44899492 + AluJb SINE Alu 2 305 -7 2285 86 0 29 chr4 157430282 157430596 -44897751 - AluSx SINE Alu -7 305 1 1037 182 28 189 chr4 157430791 157431226 -44897121 + MLT1A1 LTR MaLR 1 365 0 2846 10 0 3 chr4 157431412 157431724 -44896623 + AluYa5 SINE Alu 1 311 0 978 102 0 0 chr4 157432291 157432418 -44895929 - AluSp/q SINE Alu -20 293 167 391 340 80 25 chr4 157432888 157433126 -44895221 + MIR SINE MIR 2 252 -10 412 211 0 0 chr4 157433304 157433375 -44894972 + Charlie1 DNA MER1_type 1 71 -2690 * 1644 160 107 43 chr4 157433373 157433767 -44894580 + Charlie1 DNA MER1_type 2343 2761 0 194 359 155 19 chr4 157433768 157433871 -44894476 - MIR3 SINE MIR -49 159 43 1833 160 7 7 chr4 157434026 157434320 -44894027 - AluJb SINE Alu -18 294 1 1966 173 44 31 chr4 157434370 157434757 -44893590 + MSTD LTR MaLR 1 392 -4 332 211 66 0 chr4 157434926 157435002 -44893345 + MIR SINE MIR 111 191 -71 1245 158 33 112 chr4 157435859 157436189 -44892158 + AluJb SINE Alu 1 304 -8 2057 83 45 4 chr4 157436787 157437053 -44891294 + AluSx SINE Alu 1 277 -35 249 33 0 0 chr4 157437054 157437084 -44891263 + (TC)n Simple_repeat Simple_repeat 1 30 0 189 0 0 0 chr4 157437083 157437104 -44891243 + (CA)n Simple_repeat Simple_repeat 1 21 0 * 2223 131 12 32 chr4 157437242 157437586 -44890761 + MER1B DNA MER1_type 1 337 0 327 318 28 9 chr4 157437810 157437917 -44890430 - L2 LINE L2 -20 3252 3144 1991 110 65 123 chr4 157438030 157438157 -44890190 + MSTA LTR MaLR 8 141 -287 1776 136 4 21 chr4 157438157 157438436 -44889911 - AluJb SINE Alu -38 274 1 1991 110 65 123 chr4 157438436 157438755 -44889592 + MSTA LTR MaLR 141 428 0 187 279 44 44 chr4 157438755 157438823 -44889524 - L2 LINE L2 -254 3059 2992 564 254 25 8 chr4 157439087 157439209 -44889138 + L2 LINE L2 3185 3308 -5 2405 71 0 3 chr4 157439300 157439594 -44888753 + AluSp SINE Alu 1 293 -20 1788 142 52 7 chr4 157439940 157440228 -44888119 - AluJo SINE Alu -11 301 1 4025 126 45 19 chr4 157440674 157441367 -44886980 + MER50 LTR ERV1 1 711 -23 313 284 22 22 chr4 157441607 157441741 -44886606 + GA-rich Low_complexity Low_complexity 6 139 0 418 275 58 0 chr4 157443201 157443321 -44885026 - L2 LINE L2 0 3313 3187 768 310 165 47 chr4 157443714 157444656 -44883691 + L2 LINE L2 2204 3269 -3 2668 189 30 2 chr4 157445256 157445905 -44882442 + L1MB4 LINE L1 5099 5770 -410 3029 222 22 9 chr4 157445906 157446536 -44881811 + MER82 DNA MER2_type 15 652 -1 2046 142 71 0 chr4 157446538 157446904 -44881443 + L1MB4 LINE L1 5782 6173 -7 1823 155 33 3 chr4 157448909 157449212 -44879135 - AluSx SINE Alu 0 312 1 2200 97 0 58 chr4 157449730 157450059 -44878288 - AluSg SINE Alu 0 310 1 207 0 0 0 chr4 157450549 157450572 -44877775 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 10353 30 6 21 chr4 157451023 157453049 -44875298 + L1PA3 LINE L1 4165 6155 0 604 218 100 0 chr4 157453053 157453223 -44875124 - MIR SINE MIR 0 262 76 22 70 0 0 chr4 157453727 157453770 -44874577 + AT_rich Low_complexity Low_complexity 1 43 0 202 297 50 30 chr4 157454086 157454187 -44874160 + MIR SINE MIR 91 193 -69 21 0 0 0 chr4 157454963 157454984 -44873363 + AT_rich Low_complexity Low_complexity 1 21 0 735 244 70 12 chr4 157455159 157455401 -44872946 - MIR SINE MIR -3 259 4 290 322 20 60 chr4 157455267 157455416 -44872931 - MIR3 SINE MIR -64 144 2 23 0 0 0 chr4 157456437 157456460 -44871887 + AT_rich Low_complexity Low_complexity 1 23 0 1784 112 0 23 chr4 157457090 157457348 -44870999 - AluSx SINE Alu -18 294 43 633 335 43 50 chr4 157458673 157459049 -44869298 + L3b LINE CR1 1180 1552 -31 311 260 63 24 chr4 157459468 157459595 -44868752 - MIR SINE MIR -11 251 120 209 225 0 0 chr4 157463358 157463398 -44864949 + L2 LINE L2 3265 3304 -9 276 348 45 0 chr4 157464081 157464193 -44864154 - MIR3 SINE MIR -7 201 85 219 154 0 0 chr4 157465240 157465279 -44863068 + (TA)n Simple_repeat Simple_repeat 2 40 0 324 371 28 17 chr4 157465471 157465649 -44862698 + MER5A DNA MER1_type 7 186 -3 1113 160 42 14 chr4 157465778 157465991 -44862356 - MER20 DNA MER1_type 0 219 1 1794 130 67 0 chr4 157467148 157467432 -44860915 - MER1B DNA MER1_type 0 339 37 362 320 121 65 chr4 157468402 157468633 -44859714 - L2 LINE L2 0 3272 3029 2358 174 49 20 chr4 157468948 157469436 -44858911 + MLT1D LTR MaLR 1 502 -3 200 190 52 0 chr4 157470869 157470927 -44857420 + A-rich Low_complexity Low_complexity 3 63 0 238 287 103 38 chr4 157471006 157471166 -44857181 + MER5A DNA MER1_type 1 184 -5 21 0 0 0 chr4 157471329 157471350 -44856997 + AT_rich Low_complexity Low_complexity 1 21 0 751 139 139 0 chr4 157471595 157471732 -44856615 + FRAM SINE Alu 13 168 -8 233 333 44 53 chr4 157472421 157472535 -44855812 + L2 LINE L2 3160 3272 0 27 0 0 0 chr4 157473685 157473712 -44854635 + GC_rich Low_complexity Low_complexity 1 27 0 1791 145 28 7 chr4 157474055 157474338 -44854009 + AluSx SINE Alu 1 289 -23 225 146 0 0 chr4 157474933 157474981 -44853366 + (A)n Simple_repeat Simple_repeat 1 48 0 299 224 92 13 chr4 157477376 157477452 -44850895 + MIR3 SINE MIR 115 196 -12 227 338 13 0 chr4 157478741 157478818 -44849529 + MIR SINE MIR 24 101 -161 6000 41 0 3 chr4 157478831 157479582 -44848765 - L1PA6 LINE L1 -11 6143 5395 517 301 20 0 chr4 157479585 157479738 -44848609 + MIR SINE MIR 104 259 -3 258 402 31 8 chr4 157479739 157479866 -44848481 - L2 LINE L2 0 3272 3143 1058 170 5 10 chr4 157479914 157480108 -44848239 + MER20 DNA MER1_type 27 219 0 206 175 25 0 chr4 157480116 157480156 -44848191 - MIR SINE MIR -64 198 158 2168 82 23 36 chr4 157480169 157480473 -44847874 + AluSg SINE Alu 1 300 -10 214 272 98 54 chr4 157480844 157481040 -44847307 + MIR SINE MIR 3 211 -51 508 314 37 11 chr4 157481123 157481311 -44847036 - MIR SINE MIR -60 202 10 1033 265 86 45 chr4 157481748 157482367 -44845980 - L1MC4a LINE L1 -1910 5898 5255 492 189 8 90 chr4 157482496 157482618 -44845729 + MER2 DNA MER2_type 2 113 -232 12751 198 71 15 chr4 157482618 157482991 -44845356 - L1PB1 LINE L1 -1 6866 6515 509 79 0 40 chr4 157482991 157483092 -44845255 + (TA)n Simple_repeat Simple_repeat 1 97 0 12751 198 71 15 chr4 157483092 157484930 -44843417 - L1PB1 LINE L1 -352 6515 4780 2173 123 0 3 chr4 157484930 157485231 -44843116 - AluSx SINE Alu -12 300 1 12751 198 71 15 chr4 157485231 157489501 -44838846 - L1PB1 LINE L1 -2087 4780 6 598 123 9 26 chr4 157489515 157489629 -44838718 + MER2 DNA MER2_type 95 206 -139 237 255 20 0 chr4 157489667 157489718 -44838629 + MER2 DNA MER2_type 280 331 -14 521 315 76 43 chr4 157489767 157490135 -44838212 - L1MC4a LINE L1 -1095 5051 4672 321 273 9 9 chr4 157490155 157490265 -44838082 - L1MC4a LINE L1 -1536 4610 4501 1400 283 104 80 chr4 157491429 157492565 -44835782 - L2 LINE L2 -4 3309 2151 243 300 20 10 chr4 157493058 157493158 -44835189 - MIR SINE MIR -71 191 91 333 361 25 25 chr4 157494566 157494807 -44833540 + MIR SINE MIR 8 248 -14 2423 62 16 20 chr4 157494891 157495195 -44833152 + AluY SINE Alu 1 303 -8 343 102 85 0 chr4 157495927 157495986 -44832361 + L1PA13 LINE L1 6096 6159 -4 537 304 115 5 chr4 157496678 157496869 -44831478 + MIR SINE MIR 50 261 -1 24 32 0 0 chr4 157497004 157497035 -44831312 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 157499408 157499436 -44828911 + AT_rich Low_complexity Low_complexity 1 28 0 180 227 106 0 chr4 157499578 157499644 -44828703 - L3 LINE CR1 -585 992 920 281 256 101 85 chr4 157500494 157500623 -44827724 - MIR SINE MIR -6 256 126 546 326 81 50 chr4 157501654 157501915 -44826432 - L2 LINE L2 -1 3271 3003 245 256 164 72 chr4 157502959 157503021 -44825326 - MIR SINE MIR -28 234 179 1583 178 50 7 chr4 157503021 157503302 -44825045 - AluJb SINE Alu -19 293 1 245 256 164 72 chr4 157503302 157503434 -44824913 - MIR SINE MIR -83 179 22 469 322 87 14 chr4 157503664 157503819 -44824528 + MIR SINE MIR 26 201 -61 1583 162 45 27 chr4 157503819 157504152 -44824195 - MER44D DNA MER2_type 0 609 1 469 322 87 14 chr4 157504152 157504204 -44824143 + MIR SINE MIR 201 248 -14 253 348 90 0 chr4 157504252 157504407 -44823940 + MIR SINE MIR 7 175 -87 23 78 0 0 chr4 157504934 157504985 -44823362 + AT_rich Low_complexity Low_complexity 1 51 0 2268 104 0 3 chr4 157505053 157505360 -44822987 + AluSx SINE Alu 1 306 -6 1403 176 0 100 chr4 157505371 157505690 -44822657 - AluJb SINE Alu -25 287 1 1958 148 3 10 chr4 157506272 157506583 -44821764 - AluSx SINE Alu -3 309 1 239 296 102 0 chr4 157506926 157507014 -44821333 + MIR3 SINE MIR 72 168 -40 187 385 12 12 chr4 157509138 157509221 -44819126 - L2 LINE L2 -225 3047 2965 372 341 73 9 chr4 157510135 157510355 -44817992 + MIR SINE MIR 27 260 -2 816 232 16 49 chr4 157510755 157511001 -44817346 - Charlie8 DNA MER1_type -2147 270 33 1067 212 98 33 chr4 157511831 157511873 -44816474 - MER58B DNA MER1_type -2103 317 279 1792 124 0 33 chr4 157511873 157512146 -44816201 - AluY SINE Alu -13 298 35 1067 212 98 33 chr4 157512146 157512377 -44815970 - MER58B DNA MER1_type -2141 279 26 598 287 61 6 chr4 157512445 157512626 -44815721 - MIR SINE MIR -49 213 23 224 290 113 48 chr4 157512652 157512776 -44815571 + MER5B DNA MER1_type 2 133 -45 2531 234 107 25 chr4 157514670 157515457 -44812890 - L1MB7 LINE L1 -80 6104 5254 1397 157 164 41 chr4 157515526 157516019 -44812328 + Charlie1 DNA MER1_type 1 2711 -50 930 221 0 0 chr4 157516019 157516182 -44812165 - AluJb SINE Alu -16 296 134 1958 151 0 3 chr4 157516182 157516480 -44811867 - AluJo SINE Alu -15 297 1 269 263 0 0 chr4 157516481 157516538 -44811809 + Charlie1 DNA MER1_type 2700 2756 -5 1777 163 34 0 chr4 157516616 157516910 -44811437 + AluJo SINE Alu 1 304 -8 2317 110 0 3 chr4 157517703 157518011 -44810336 + AluSx SINE Alu 1 307 -5 216 214 23 168 chr4 157518011 157518184 -44810163 + MIR SINE MIR 115 262 0 200 280 0 67 chr4 157518881 157518956 -44809391 - L2 LINE L2 -4 3309 3240 215 351 134 29 chr4 157519408 157519579 -44808768 + L2 LINE L2 3070 3258 -14 405 369 58 41 chr4 157519785 157520178 -44808169 - L2 LINE L2 -775 2539 2140 241 326 135 0 chr4 157520458 157520547 -44807800 + L2 LINE L2 3169 3269 -3 374 325 72 36 chr4 157520720 157520914 -44807433 + MIR SINE MIR 1 201 -61 26 30 0 0 chr4 157522069 157522102 -44806245 + AT_rich Low_complexity Low_complexity 1 33 0 2030 188 113 59 chr4 157522324 157522967 -44805380 - L1ME2 LINE L1 -118 6046 5369 4354 202 76 48 chr4 157523015 157524252 -44804095 - L1MC4a LINE L1 0 7808 6537 965 218 66 41 chr4 157524259 157524576 -44803771 - L1MC4a LINE L1 -1787 6021 5697 631 200 46 41 chr4 157524580 157524775 -44803572 - L1ME2 LINE L1 -816 5330 5135 1840 172 52 7 chr4 157525211 157525563 -44802784 + MER61C LTR ERV1 1 434 0 1980 142 0 10 chr4 157526279 157526589 -44801758 - AluSx SINE Alu -4 308 2 257 342 43 12 chr4 157526589 157526750 -44801597 + MLT1L LTR MaLR 448 613 -2 13875 113 40 52 chr4 157527434 157529460 -44798887 - Tigger1 DNA MER2_type 0 2418 424 1715 161 4 4 chr4 157529460 157529721 -44798626 - AluJb SINE Alu -19 293 33 13875 113 40 52 chr4 157529721 157530140 -44798207 - Tigger1 DNA MER2_type -1994 424 2 389 204 42 58 chr4 157530367 157530483 -44797864 - LTR29 LTR ERV1 -76 568 452 2100 107 0 39 chr4 157530483 157530793 -44797554 + AluY SINE Alu 1 298 -13 389 204 42 58 chr4 157530793 157530887 -44797460 - LTR29 LTR ERV1 -192 452 318 676 89 10 0 chr4 157530903 157531004 -44797343 - L1PA15 LINE L1 0 6165 6064 342 196 205 73 chr4 157531199 157531356 -44796991 + L1MC5 LINE L1 7535 7670 -291 189 0 0 0 chr4 157531356 157531377 -44796970 + (TA)n Simple_repeat Simple_repeat 1 21 0 342 196 205 73 chr4 157531377 157531546 -44796801 + L1MC5 LINE L1 7670 7904 -57 360 270 17 0 chr4 157531677 157531792 -44796555 - L1MB8 LINE L1 -2 6176 6060 26 0 0 0 chr4 157532575 157532601 -44795746 + AT_rich Low_complexity Low_complexity 1 26 0 483 185 67 17 chr4 157532818 157532937 -44795410 + MER94 DNA DNA 10 134 0 25 0 0 0 chr4 157534169 157534194 -44794153 + AT_rich Low_complexity Low_complexity 1 25 0 279 363 123 47 chr4 157534780 157535204 -44793143 - L2 LINE L2 -6 3266 2811 515 173 15 23 chr4 157536145 157536278 -44792069 - MER33 DNA MER1_type -45 279 148 206 95 24 0 chr4 157536319 157536361 -44791986 + (TA)n Simple_repeat Simple_repeat 1 43 0 774 167 7 21 chr4 157536361 157536505 -44791842 - MER33 DNA MER1_type -181 143 2 2160 106 0 0 chr4 157537117 157537400 -44790947 + AluSx SINE Alu 1 283 -29 289 302 142 32 chr4 157537504 157537986 -44790361 + L2 LINE L2 2766 3313 0 1821 121 22 16 chr4 157538073 157538395 -44789952 + L1MB3 LINE L1 5858 6181 -2 300 252 128 30 chr4 157538398 157538583 -44789764 + L1P4 LINE L1 5432 5637 -526 1798 183 7 10 chr4 157539189 157539495 -44788852 - AluJo SINE Alu -7 305 1 275 301 60 0 chr4 157540598 157540681 -44787666 + MIR SINE MIR 23 110 -152 323 333 143 0 chr4 157541359 157541527 -44786820 - MIR SINE MIR -3 259 68 327 280 122 9 chr4 157541550 157541657 -44786690 + MIR SINE MIR 30 148 -114 261 0 0 0 chr4 157542259 157542288 -44786059 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2251 107 0 7 chr4 157542709 157543019 -44785328 - AluSq SINE Alu -5 308 1 204 220 20 20 chr4 157543835 157543885 -44784462 + L2 LINE L2 3264 3313 0 21 71 0 0 chr4 157544232 157544274 -44784073 + AT_rich Low_complexity Low_complexity 1 42 0 1615 154 16 79 chr4 157547102 157547420 -44780927 - AluJb SINE Alu -10 302 5 463 309 46 50 chr4 157548135 157548397 -44779950 + MIR SINE MIR 2 262 0 291 281 37 0 chr4 157548525 157548607 -44779740 + MIR SINE MIR 168 252 -10 378 314 157 22 chr4 157549658 157549881 -44778466 + L2 LINE L2 2124 2376 -938 * 514 270 61 65 chr4 157549861 157550091 -44778256 + L2 LINE L2 3084 3312 -1 214 250 167 33 chr4 157550084 157550204 -44778143 + L2 LINE L2 2351 2486 -828 * 186 373 150 0 chr4 157550345 157550498 -44777849 + L2 LINE L2 2678 2853 -461 206 363 44 26 chr4 157550574 157550687 -44777660 + L2 LINE L2 2977 3091 -181 416 254 36 93 chr4 157552621 157552814 -44775533 - MIR SINE MIR -46 216 35 222 193 0 0 chr4 157553403 157553460 -44774887 + (CATA)n Simple_repeat Simple_repeat 2 58 0 36 53 0 0 chr4 157553789 157553846 -44774501 + AT_rich Low_complexity Low_complexity 1 57 0 3114 206 19 16 chr4 157654411 157655099 -44673248 + L1P LINE L1 1942 2631 -3515 2229 84 3 0 chr4 157655266 157655553 -44672794 - AluY SINE Alu -21 290 3 3520 203 67 16 chr4 157655553 157656737 -44671610 - L1ME1 LINE L1 -5 6161 4922 22 0 0 0 chr4 157657248 157657270 -44671077 + AT_rich Low_complexity Low_complexity 1 22 0 408 191 79 32 chr4 157658168 157658294 -44670053 - L1M4 LINE L1 -999 5147 5016 1509 188 3 13 chr4 157658306 157658620 -44669727 - AluYa5 SINE Alu 0 311 1 185 128 0 77 chr4 157658765 157658804 -44669543 - L2 LINE L2 -2 3311 3276 408 306 60 49 chr4 157659309 157659492 -44668855 - L2 LINE L2 0 3272 3088 891 266 65 9 chr4 157659695 157659909 -44668438 + MIR SINE MIR 16 241 -21 24 0 0 0 chr4 157660841 157660865 -44667482 + AT_rich Low_complexity Low_complexity 1 24 0 553 44 0 0 chr4 157661882 157661950 -44666397 - MLT2A2 LTR ERVL -385 68 1 490 277 147 4 chr4 157661955 157662186 -44666161 - L2 LINE L2 -896 2418 2155 1769 169 33 22 chr4 157662198 157662559 -44665788 - MLT1A1 LTR MaLR 0 365 1 273 378 7 34 chr4 157662739 157662887 -44665460 + L2 LINE L2 2918 3061 -211 7778 174 12 6 chr4 157663244 157664989 -44663358 - L1PA13 LINE L1 -4 6159 4397 225 65 0 0 chr4 157664989 157665020 -44663327 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7778 174 12 6 chr4 157665020 157665569 -44662778 - L1PA13 LINE L1 -1766 4397 3853 884 226 131 13 chr4 157667748 157668053 -44660294 + MER113 DNA MER1_type? 86 426 -95 21 0 0 0 chr4 157668626 157668647 -44659700 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 157668762 157668784 -44659563 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 157668837 157668862 -44659485 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr4 157668915 157668936 -44659411 + AT_rich Low_complexity Low_complexity 1 21 0 186 411 11 0 chr4 157669622 157669712 -44658635 - L2 LINE L2 -15 3298 3208 2314 97 0 0 chr4 157669849 157670148 -44658199 + AluSg SINE Alu 5 303 -7 2869 0 0 6 chr4 157670375 157670688 -44657659 - AluYa5 SINE Alu 0 311 1 239 300 0 0 chr4 157670690 157670790 -44657557 - L1M4 LINE L1 -1117 5029 4930 321 302 0 10 chr4 157671063 157671159 -44657188 - L1M4 LINE L1 -1122 5024 4930 524 274 23 81 chr4 157671444 157671703 -44656644 + L2 LINE L2 3062 3305 -8 23 33 0 0 chr4 157672313 157672343 -44656004 + AT_rich Low_complexity Low_complexity 1 30 0 1672 178 0 27 chr4 157672891 157673206 -44655141 - AluJb SINE Alu 0 307 1 1024 191 0 26 chr4 157673777 157673966 -44654381 - AluJb SINE Alu -47 265 82 2175 107 0 3 chr4 157674197 157674495 -44653852 - AluSg SINE Alu -7 303 7 840 181 0 0 chr4 157674571 157674698 -44653649 - FLAM_C SINE Alu -16 127 1 1048 172 35 10 chr4 157675549 157675752 -44652595 - MER3 DNA MER1_type -1 208 1 23 54 0 0 chr4 157676125 157676162 -44652185 + AT_rich Low_complexity Low_complexity 1 37 0 1880 137 4 4 chr4 157676918 157677224 -44651123 + AluSx SINE Alu 15 320 0 219 204 0 0 chr4 157677338 157677382 -44650965 + L2 LINE L2 3168 3211 -61 248 132 0 0 chr4 157677616 157677654 -44650693 - L2 LINE L2 -4 3309 3272 245 261 15 0 chr4 157677714 157677779 -44650568 - L2 LINE L2 -48 3224 3159 1018 208 14 23 chr4 157677974 157678195 -44650152 + MER20 DNA MER1_type 1 219 0 1723 193 113 24 chr4 157678261 157678685 -44649662 + MLT1C LTR MaLR 6 467 0 408 66 91 8 chr4 157678790 157678911 -44649436 + (TA)n Simple_repeat Simple_repeat 1 131 0 183 153 63 18 chr4 157678936 157679047 -44649300 + (TATAA)n Simple_repeat Simple_repeat 4 119 0 194 274 0 39 chr4 157679083 157679134 -44649213 - L2 LINE L2 -50 3263 3215 1094 171 119 107 chr4 157683523 157683924 -44644423 - MLT1D LTR MaLR 0 505 100 834 143 16 66 chr4 157683924 157684106 -44644241 - Tigger7 DNA MER2_type 0 2487 2315 4620 114 76 80 chr4 157684106 157684389 -44643958 - Tigger3(Golem) DNA MER2_type 0 3029 2746 669 217 0 23 chr4 157684389 157684518 -44643829 + FLAM_A SINE Alu 1 126 -7 4620 114 76 80 chr4 157684518 157685198 -44643149 - Tigger3(Golem) DNA MER2_type -283 2746 2070 387 272 0 0 chr4 157685197 157685278 -44643069 - Tigger3(Golem) DNA MER2_type -2882 147 67 * 1065 140 18 12 chr4 157685279 157685443 -44642904 - FRAM SINE Alu -11 165 1 990 156 5 16 chr4 157685601 157685787 -44642560 + LTR2 LTR ERV1 266 449 0 31944 78 6 8 chr4 157685787 157689988 -44638359 + HERVE LTR ERV1 1 4192 -3621 18918 37 8 0 chr4 157689988 157693079 -44635268 + L1PA4 LINE L1 3048 6154 -1 252 351 80 11 chr4 157693266 157693528 -44634819 - L2 LINE L2 -838 2476 2197 383 267 226 9 chr4 157693786 157694007 -44634340 - L2 LINE L2 0 3313 3045 1276 223 49 37 chr4 157694007 157694357 -44633990 - MLT1A1 LTR MaLR 0 365 12 395 312 7 78 chr4 157694364 157694518 -44633829 - L2 LINE L2 -264 3049 2907 2211 168 53 55 chr4 157694518 157694854 -44633493 - MLT1D LTR MaLR 0 505 169 1898 168 49 55 chr4 157694854 157695324 -44633023 + MLT1C LTR MaLR 1 467 0 2211 168 53 55 chr4 157695324 157695493 -44632854 - MLT1D LTR MaLR -336 169 1 238 287 69 11 chr4 157695570 157695657 -44632690 - L2 LINE L2 -497 2817 2726 331 43 106 0 chr4 157695661 157695708 -44632639 + MADE1 DNA Mariner 28 79 -1 2998 105 11 31 chr4 157695742 157696191 -44632156 - MLT2A2 LTR ERVL -2 451 12 7698 62 4 0 chr4 157696192 157697149 -44631198 - HERVL-A2 LTR ERVL 0 5654 4694 361 282 68 49 chr4 157697874 157698037 -44630310 + MIR3 SINE MIR 15 180 -28 26 101 0 0 chr4 157698249 157698338 -44630009 + AT_rich Low_complexity Low_complexity 1 89 0 275 303 161 12 chr4 157698987 157699149 -44629198 - MIR SINE MIR -54 208 23 22 0 0 0 chr4 157699430 157699452 -44628895 + AT_rich Low_complexity Low_complexity 1 22 0 3599 210 74 35 chr4 157699575 157701526 -44626821 - L1ME1 LINE L1 -15 6151 4123 333 237 48 59 chr4 157701531 157701717 -44626630 - MER95 LTR ERV -2 429 246 2507 249 51 13 chr4 157701945 157702775 -44625572 - L1ME1 LINE L1 -2026 4120 3260 1173 178 32 22 chr4 157702784 157702867 -44625480 + MER58B DNA MER1_type 1 82 -2338 2001 61 36 7 chr4 157702867 157703147 -44625200 + L1MA2 LINE L1 6017 6304 0 1173 178 32 22 chr4 157703147 157703379 -44624968 + MER58B DNA MER1_type 82 303 -38 2013 254 142 25 chr4 157703403 157704053 -44624294 + MER21B LTR ERV1 13 738 -125 574 191 12 12 chr4 157704111 157704279 -44624068 - L1ME1 LINE L1 -2906 3240 3073 668 252 19 0 chr4 157704297 157704452 -44623895 - MER63 DNA MER1_type -277 785 2 249 372 76 0 chr4 157704598 157704743 -44623604 + L3b LINE CR1 1422 1577 -6 365 328 109 11 chr4 157705884 157706067 -44622280 + MIR3 SINE MIR 3 203 -5 223 189 14 14 chr4 157707331 157707405 -44620942 + (TA)n Simple_repeat Simple_repeat 1 74 0 398 228 65 16 chr4 157708327 157708450 -44619897 - MLT1L LTR MaLR -21 594 466 241 246 88 0 chr4 157708562 157708619 -44619728 - MLT1J LTR MaLR -322 189 128 2071 122 17 180 chr4 157708656 157709312 -44619035 - L1 LINE L1 -2155 3991 3443 277 285 39 15 chr4 157709316 157709446 -44618901 - L1M4 LINE L1 -1016 5130 4998 309 289 53 53 chr4 157709940 157710015 -44618332 - L1MEd LINE L1 -5902 217 143 1810 157 29 35 chr4 157710015 157710360 -44617987 + MER2 DNA MER2_type 1 343 -1 309 289 53 53 chr4 157710360 157710436 -44617911 - L1MEd LINE L1 -5975 144 66 183 42 0 0 chr4 157710776 157710800 -44617547 + (TTG)n Simple_repeat Simple_repeat 3 26 0 502 246 64 54 chr4 157711991 157712194 -44616153 + L3 LINE CR1 1218 1422 -155 36 33 0 16 chr4 157712216 157712256 -44616091 + AT_rich Low_complexity Low_complexity 1 41 -19 2405 34 0 7 chr4 157712256 157712550 -44615797 - L1PA4 LINE L1 -3 6152 5861 36 33 0 16 chr4 157712550 157712570 -44615777 + AT_rich Low_complexity Low_complexity 41 60 0 996 130 7 26 chr4 157713076 157713230 -44615117 + AluJo SINE Alu 1 151 -161 316 200 0 0 chr4 157713249 157713299 -44615048 + 5S rRNA rRNA 1 50 -71 28 48 0 0 chr4 157713302 157713344 -44615003 + AT_rich Low_complexity Low_complexity 1 42 0 438 20 0 0 chr4 157713677 157713728 -44614619 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 2219 127 3 0 chr4 157713866 157714173 -44614174 - AluSx SINE Alu -4 308 1 241 321 91 53 chr4 157714308 157714335 -44614012 - L2 LINE L2 -213 3059 3034 1595 197 95 128 chr4 157714335 157714552 -44613795 + LTR1B LTR ERV1 1 224 -602 252 0 0 0 chr4 157714552 157714580 -44613767 + (CA)n Simple_repeat Simple_repeat 1 28 0 1595 197 95 128 chr4 157714580 157715216 -44613131 + LTR1B LTR ERV1 224 826 0 241 321 91 53 chr4 157715216 157715397 -44612950 - L2 LINE L2 -238 3034 2843 183 42 0 0 chr4 157718216 157718240 -44610107 + (TA)n Simple_repeat Simple_repeat 1 24 0 207 295 162 19 chr4 157719549 157719654 -44608693 - L2 LINE L2 -233 3039 2920 855 244 73 44 chr4 157719853 157720128 -44608219 - MLT1J LTR MaLR 0 511 229 292 87 0 0 chr4 157720136 157720207 -44608140 + Alu SINE Alu 247 312 0 483 264 159 11 chr4 157720229 157720411 -44607936 - MLT1J LTR MaLR -290 221 13 22 0 0 0 chr4 157720569 157720591 -44607756 + AT_rich Low_complexity Low_complexity 1 22 0 213 324 56 0 chr4 157720667 157720738 -44607609 + MIR SINE MIR 7 81 -181 3801 150 7 8 chr4 157721556 157722258 -44606089 + L1M1 LINE L1 2219 2919 -4646 6555 182 40 20 chr4 157722262 157724194 -44604153 + L1M1 LINE L1 3063 5037 -2528 2083 182 31 22 chr4 157724197 157724652 -44603695 + L1MA4 LINE L1 5835 6293 -7 258 308 51 34 chr4 157725455 157725547 -44602800 + MIR SINE MIR 33 129 -133 2095 128 6 46 chr4 157725547 157725898 -44602449 + MER1B DNA MER1_type 1 337 0 258 308 51 34 chr4 157725898 157725922 -44602425 + MIR SINE MIR 129 151 -111 857 221 113 0 chr4 157725922 157726144 -44602203 - MER46C DNA MER2_type 0 338 92 194 308 0 0 chr4 157726229 157726281 -44602066 + MIR SINE MIR 159 210 -52 221 0 35 0 chr4 157726728 157726757 -44601590 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 1033 164 19 42 chr4 157727017 157727231 -44601116 + MER3 DNA MER1_type 1 209 0 1031 231 21 16 chr4 157728879 157729121 -44599226 + MIR SINE MIR 20 262 0 22 0 0 0 chr4 157730437 157730459 -44597888 + AT_rich Low_complexity Low_complexity 1 22 0 231 327 96 19 chr4 157730744 157730848 -44597499 - L2 LINE L2 -10 3262 3151 180 328 90 37 chr4 157730908 157731042 -44597305 + MIR SINE MIR 31 171 -91 454 324 84 22 chr4 157731304 157731529 -44596818 + MIR SINE MIR 3 241 -21 263 268 49 120 chr4 157731780 157732220 -44596127 - MER5A DNA MER1_type -22 167 36 1835 187 0 0 chr4 157731899 157732198 -44596149 + AluJb SINE Alu 1 299 -13 260 297 42 103 chr4 157732198 157732244 -44596103 + MER5A DNA MER1_type 142 189 0 1899 166 0 3 chr4 157732915 157733216 -44595131 + AluJo SINE Alu 1 300 -12 570 250 28 50 chr4 157733385 157733565 -44594782 - MER5B DNA MER1_type -2 176 1 246 328 35 70 chr4 157733594 157733823 -44594524 - L2 LINE L2 -706 2608 2388 * 585 299 120 0 chr4 157733817 157734001 -44594346 + MIR SINE MIR 47 252 -10 2041 139 7 0 chr4 157734033 157734321 -44594026 + AluSx SINE Alu 1 290 -22 441 36 0 0 chr4 157734321 157734342 -44594005 + (CA)n Simple_repeat Simple_repeat 1 76 0 441 36 0 0 chr4 157734342 157734397 -44593950 + (CA)n Simple_repeat Simple_repeat 2 56 0 2261 121 0 0 chr4 157734661 157734968 -44593379 + AluSx SINE Alu 6 312 0 407 278 60 0 chr4 157735097 157735230 -44593117 + L2 LINE L2 2934 3074 -239 2118 129 3 0 chr4 157735441 157735752 -44592595 - AluSx SINE Alu 0 312 1 1756 176 0 17 chr4 157735789 157736085 -44592262 + AluJo SINE Alu 11 301 -11 364 261 8 104 chr4 157738339 157738473 -44589874 + L2 LINE L2 3193 3313 0 212 221 87 58 chr4 157738934 157739038 -44589309 + MIR SINE MIR 156 262 0 1726 182 0 7 chr4 157739091 157739388 -44588959 - AluJo SINE Alu -17 295 1 563 255 16 22 chr4 157739462 157739646 -44588701 - L1MC5 LINE L1 -35 7926 7744 2155 128 0 0 chr4 157740281 157740577 -44587770 - AluSx SINE Alu -16 296 1 4212 171 97 2 chr4 157740726 157741513 -44586834 + MER21B LTR ERV1 1 861 -2 330 26 0 0 chr4 157742083 157742122 -44586225 + (CAT)n Simple_repeat Simple_repeat 2 40 0 592 340 66 12 chr4 157742667 157742926 -44585421 + L2 LINE L2 2632 2904 -410 790 273 85 36 chr4 157742929 157743436 -44584911 - L2 LINE L2 -1 3312 2733 27 29 0 0 chr4 157743729 157743763 -44584584 + AT_rich Low_complexity Low_complexity 1 34 0 186 340 0 0 chr4 157744031 157744078 -44584269 - L2 LINE L2 -24 3248 3202 264 253 84 78 chr4 157744603 157744757 -44583590 + MIR SINE MIR 108 262 0 * 333 355 0 0 chr4 157744750 157744857 -44583490 - MIR SINE MIR -108 154 48 2100 129 3 0 chr4 157745399 157745693 -44582654 - AluSx SINE Alu -16 296 2 511 309 80 5 chr4 157747133 157747334 -44581013 - L2 LINE L2 0 3313 3098 21 0 0 0 chr4 157748722 157748743 -44579604 + AT_rich Low_complexity Low_complexity 1 21 0 1994 120 17 21 chr4 157749001 157749292 -44579055 + AluSx SINE Alu 1 290 -22 379 237 178 35 chr4 157749486 157749655 -44578692 + MIR SINE MIR 45 237 -25 329 329 38 67 chr4 157749864 157750084 -44578263 + MIR SINE MIR 2 212 -50 1328 176 18 21 chr4 157750503 157750794 -44577553 - L1ME1 LINE L1 -8 6158 5879 258 242 81 0 chr4 157751534 157751596 -44576751 - MLT1L LTR MaLR -136 479 413 264 30 0 0 chr4 157751598 157751631 -44576716 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1250 168 5 14 chr4 157751655 157751869 -44576478 - AluSx SINE Alu -100 212 1 308 299 55 75 chr4 157751872 157752073 -44576274 - MLT1L LTR MaLR -197 418 222 2480 65 0 10 chr4 157752381 157752690 -44575657 + AluY SINE Alu 1 306 -5 1648 188 6 13 chr4 157752801 157753115 -44575232 - AluJb SINE Alu 0 312 1 243 283 115 26 chr4 157753312 157753425 -44574922 - MIR3 SINE MIR -46 162 40 535 108 0 0 chr4 157753874 157753948 -44574399 + Alu SINE Alu 222 295 -15 21 0 0 0 chr4 157754273 157754294 -44574053 + AT_rich Low_complexity Low_complexity 1 21 0 200 118 0 29 chr4 157754409 157754443 -44573904 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 278 318 49 76 chr4 157754538 157754761 -44573586 - MIR SINE MIR -24 238 22 222 360 7 43 chr4 157755189 157755328 -44573019 - L2 LINE L2 -1355 1959 1826 225 282 161 24 chr4 157755704 157755828 -44572519 - MIR3 SINE MIR -62 146 6 429 81 0 0 chr4 157756214 157756276 -44572071 + (CA)n Simple_repeat Simple_repeat 2 63 0 1606 224 127 12 chr4 157756727 157757323 -44571024 + MER39 LTR ERV1 1 704 -3 221 286 0 16 chr4 157757510 157757573 -44570774 - MER5B DNA MER1_type -45 133 72 2379 89 0 0 chr4 157758564 157758867 -44569480 - AluSx SINE Alu -9 303 1 22 35 0 0 chr4 157759554 157759583 -44568764 + AT_rich Low_complexity Low_complexity 1 29 0 3867 251 63 26 chr4 157760569 157761794 -44566553 + L2 LINE L2 1103 2372 -942 711 247 82 96 chr4 157761796 157762197 -44566150 + MLT1I LTR MaLR 1 408 -1 736 175 147 0 chr4 157762198 157762375 -44565972 + L2 LINE L2 2372 2574 -740 1577 170 35 35 chr4 157762375 157762820 -44565527 + L1ME1 LINE L1 5164 5609 -743 1638 203 67 74 chr4 157762934 157763501 -44564846 + L1ME1 LINE L1 5599 6161 -5 2432 79 0 0 chr4 157764687 157764991 -44563356 + AluY SINE Alu 1 304 -7 2270 158 43 9 chr4 157765567 157765986 -44562361 + Tigger2a DNA MER2_type 1 433 -1 591 229 54 36 chr4 157766247 157766413 -44561934 - MIR SINE MIR -16 246 78 660 134 10 0 chr4 157766622 157766719 -44561628 + AluSg/x SINE Alu 196 293 -19 285 100 0 0 chr4 157767181 157767231 -44561116 + (TTTTTG)n Simple_repeat Simple_repeat 1 50 0 723 139 38 0 chr4 157767384 157767592 -44560755 - L1MA9 LINE L1 -1 6311 6047 2420 84 0 3 chr4 157767729 157768037 -44560310 + AluSc SINE Alu 1 307 -2 1022 328 114 12 chr4 157768923 157769511 -44558836 + L2 LINE L2 2330 2977 -337 259 295 26 0 chr4 157769677 157769755 -44558592 + L2 LINE L2 3234 3313 0 266 333 34 34 chr4 157769810 157769927 -44558420 - MIR SINE MIR -112 150 34 1939 112 10 17 chr4 157770712 157771008 -44557339 - AluSc SINE Alu -15 294 1 410 300 39 0 chr4 157771387 157771517 -44556830 - MIR SINE MIR -10 252 118 22 35 0 0 chr4 157772341 157772370 -44555977 + AT_rich Low_complexity Low_complexity 1 29 0 2194 109 0 0 chr4 157772419 157772713 -44555634 - AluSq SINE Alu -17 296 3 730 269 75 7 chr4 157772717 157772999 -44555348 + L1ME4a LINE L1 5526 5826 -295 235 333 22 22 chr4 157772995 157773085 -44555262 + L1MC4a LINE L1 5494 5583 -538 * 183 200 0 0 chr4 157773088 157773123 -44555224 - L2 LINE L2 0 3272 3238 878 284 41 9 chr4 157773134 157773454 -44554893 + L1MC4a LINE L1 5572 5901 -1907 26 50 0 0 chr4 157773686 157773726 -44554621 + AT_rich Low_complexity Low_complexity 1 40 0 650 171 0 0 chr4 157776147 157776252 -44552095 + FRAM SINE Alu 59 163 -13 329 258 213 30 chr4 157776270 157776306 -44552041 + L1ME4a LINE L1 5677 5705 -416 1873 166 6 10 chr4 157776306 157776619 -44551728 - AluJo SINE Alu 0 312 1 329 258 213 30 chr4 157776619 157776915 -44551432 + L1ME4a LINE L1 5705 6070 -51 21 36 0 0 chr4 157776942 157776970 -44551377 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr4 157778004 157778047 -44550300 + AT_rich Low_complexity Low_complexity 1 43 0 206 388 10 0 chr4 157778173 157778271 -44550076 + L3 LINE CR1 1471 1569 -8 486 316 139 8 chr4 157779136 157779344 -44549003 - MIR SINE MIR 0 262 18 369 43 0 0 chr4 157779948 157779995 -44548352 + (CA)n Simple_repeat Simple_repeat 2 48 0 2110 146 10 0 chr4 157780042 157780351 -44547996 - AluSx SINE Alu 0 312 1 413 294 167 15 chr4 157780538 157780742 -44547605 + MIR SINE MIR 28 262 0 207 0 0 0 chr4 157780923 157780946 -44547401 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2168 110 28 0 chr4 157780962 157781252 -44547095 - AluSx SINE Alu -14 298 1 1652 149 7 25 chr4 157782143 157782424 -44545923 - AluJb SINE Alu -36 276 1 362 151 14 0 chr4 157782835 157782908 -44545439 + (TA)n Simple_repeat Simple_repeat 2 75 0 212 265 12 48 chr4 157783347 157783430 -44544917 - MIR SINE MIR 0 262 183 1130 160 0 21 chr4 157783524 157783622 -44544725 - MER46A DNA MER2_type 0 236 143 358 217 225 25 chr4 157783622 157783742 -44544605 + MER46A DNA MER2_type 3 146 -90 363 276 104 22 chr4 157784221 157784355 -44543992 - MIR SINE MIR -111 151 7 21 36 0 0 chr4 157787190 157787218 -44541129 + AT_rich Low_complexity Low_complexity 1 28 0 183 162 0 0 chr4 157788968 157789005 -44539342 + (TG)n Simple_repeat Simple_repeat 2 38 0 1460 154 19 19 chr4 157791975 157792242 -44536105 + L1MB3 LINE L1 5866 6132 -51 973 262 109 24 chr4 157792856 157793279 -44535068 - MLT1J LTR MaLR -41 470 12 761 255 0 19 chr4 157793279 157793487 -44534860 + L1M2a LINE L1 4 207 -6961 4950 244 45 26 chr4 157793493 157793890 -44534457 + L1M2a LINE L1 746 1134 -6033 189 0 0 0 chr4 157793890 157793911 -44534436 + (CTG)n Simple_repeat Simple_repeat 3 23 0 4950 244 45 26 chr4 157793911 157796557 -44531790 + L1M2a LINE L1 1134 3579 -3588 1648 183 7 14 chr4 157796557 157796846 -44531501 + AluJo SINE Alu 1 287 -25 4950 244 45 26 chr4 157796846 157796916 -44531431 + L1M2a LINE L1 3579 3646 -3521 795 228 9 40 chr4 157796929 157797153 -44531194 + L1MA9 LINE L1 5887 6103 -209 206 207 12 73 chr4 157798339 157798421 -44529926 + A-rich Low_complexity Low_complexity 5 81 0 216 293 35 0 chr4 157800124 157800182 -44528165 + MIR SINE MIR 82 141 -67 580 185 0 75 chr4 157800251 157800397 -44527950 + FLAM_C SINE Alu 1 135 -8 1437 207 34 24 chr4 157800402 157800697 -44527650 + AluJb SINE Alu 4 301 -11 2451 193 51 10 chr4 157800996 157801483 -44526864 - MER21B LTR ERV1 -30 833 327 432 262 39 0 chr4 157801465 157801568 -44526779 - MER21B LTR ERV1 -712 151 45 * 1878 168 196 72 chr4 157801577 157801941 -44526406 + LTR1B LTR ERV1 1 319 -466 4537 73 3 3 chr4 157801941 157802532 -44525815 - LTR10C LTR ERV1 0 591 1 1878 168 196 72 chr4 157802532 157802867 -44525480 + LTR1B LTR ERV1 319 785 0 315 198 36 81 chr4 157802923 157803034 -44525313 - MER21B LTR ERV1 -757 106 1 400 272 97 0 chr4 157803043 157803146 -44525201 + L2 LINE L2 3196 3308 -5 189 0 0 0 chr4 157805245 157805266 -44523081 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 318 50 0 0 chr4 157805265 157805305 -44523042 + (TG)n Simple_repeat Simple_repeat 1 40 0 190 329 0 53 chr4 157805864 157805940 -44522407 - L2 LINE L2 -8 3305 3234 868 161 93 6 chr4 157806348 157806510 -44521837 - MER69A DNA AcHobo -1 176 1 302 268 22 87 chr4 157807691 157807829 -44520518 + L2 LINE L2 3176 3304 -9 454 266 193 29 chr4 157808489 157808583 -44519764 - MIR SINE MIR 0 262 185 2037 128 12 99 chr4 157808583 157808996 -44519351 + MER51B LTR ERV1 1 377 0 454 266 193 29 chr4 157808996 157809108 -44519239 - MIR SINE MIR -77 185 22 258 269 13 13 chr4 157809134 157809212 -44519135 - MIR SINE MIR 0 262 185 516 313 7 21 chr4 157809214 157809374 -44518973 + MIR3 SINE MIR 15 173 -35 624 152 10 10 chr4 157810001 157810100 -44518247 + MSTB LTR MaLR 1 99 -327 342 48 0 0 chr4 157810612 157810654 -44517693 + MADE1 DNA Mariner 1 42 -38 383 292 103 11 chr4 157810684 157810869 -44517478 - L1ME LINE L1 -699 5463 5262 24 0 0 0 chr4 157810884 157810908 -44517439 + AT_rich Low_complexity Low_complexity 1 24 0 4549 137 36 1 chr4 157810916 157811646 -44516701 - L1PA16 LINE L1 -13 6153 5399 361 204 0 78 chr4 157811662 157811765 -44516582 - L1MC4 LINE L1 -11 8031 7937 293 401 68 39 chr4 157811951 157812258 -44516089 + L2 LINE L2 2937 3252 -20 561 195 25 17 chr4 157812375 157812493 -44515854 + MLT1A2 LTR MaLR 42 160 -205 7312 186 34 10 chr4 157812498 157813785 -44514562 + L1PB4 LINE L1 3711 5044 -1102 2184 107 7 3 chr4 157813785 157814093 -44514254 + AluY SINE Alu 1 309 -2 7312 186 34 10 chr4 157814093 157814349 -44513998 + L1PB4 LINE L1 5044 5292 -854 1693 149 49 0 chr4 157814349 157814634 -44513713 + L1PB4 LINE L1 5855 6156 0 697 226 31 53 chr4 157814642 157814868 -44513479 + MLT1A2 LTR MaLR 154 374 0 536 246 74 53 chr4 157815031 157815275 -44513072 + MIR SINE MIR 3 256 -6 1791 173 0 22 chr4 157815656 157815974 -44512373 + AluJb SINE Alu 1 311 -1 195 220 0 0 chr4 157817735 157817785 -44510562 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 644 328 58 23 chr4 157818031 157818368 -44509979 + L2 LINE L2 2670 3030 -283 815 159 0 60 chr4 157818373 157818524 -44509823 + AluJb SINE Alu 163 304 -8 688 272 48 32 chr4 157818533 157818783 -44509564 - MIR SINE MIR -16 246 2 243 278 113 60 chr4 157818792 157818925 -44509422 + L2 LINE L2 3174 3313 0 1825 143 4 11 chr4 157819686 157819965 -44508382 - AluSx SINE Alu -35 277 1 1380 188 0 65 chr4 157820390 157820714 -44507633 + AluJo SINE Alu 1 303 -9 200 211 0 0 chr4 157823587 157823625 -44504722 + (CATA)n Simple_repeat Simple_repeat 3 40 0 2136 307 78 52 chr4 157824164 157825717 -44502630 - L2 LINE L2 -1 3312 1730 209 256 0 0 chr4 157825846 157825889 -44502458 - L2 LINE L2 -15 3257 3215 182 197 105 40 chr4 157826936 157827012 -44501335 - MIR SINE MIR -129 133 53 253 94 0 0 chr4 157827341 157827373 -44500974 - L1MC4 LINE L1 -158 7884 7853 * 1295 212 66 3 chr4 157827371 157827673 -44500674 - L1MC4 LINE L1 -1235 6807 6487 350 237 68 111 chr4 157827969 157828176 -44500171 - HAL1 LINE L1 -883 1624 1427 735 262 101 4 chr4 157828178 157828415 -44499932 + MIR SINE MIR 1 260 -2 450 303 81 30 chr4 157828575 157828872 -44499475 - L1MEd LINE L1 -5545 574 263 380 297 102 57 chr4 157828993 157829239 -44499108 + MIR SINE MIR 6 262 0 353 288 125 38 chr4 157829263 157829334 -44499013 - L1MC4 LINE L1 -2211 5597 5534 1369 183 64 17 chr4 157829334 157829629 -44498718 - AluJo SINE Alu -3 309 1 353 288 125 38 chr4 157829629 157829786 -44498561 - L1MC4 LINE L1 -2274 5534 5332 360 0 0 0 chr4 157829786 157829826 -44498521 + (TG)n Simple_repeat Simple_repeat 1 40 0 353 288 125 38 chr4 157829826 157829909 -44498438 - L1MC4 LINE L1 -2476 5332 5258 878 128 15 0 chr4 157829946 157830079 -44498268 - AluJo SINE Alu -177 135 1 2214 114 0 0 chr4 157832007 157832305 -44496042 + AluSx SINE Alu 1 298 -14 1527 183 45 12 chr4 157832518 157832852 -44495495 - L1MA10 LINE L1 -4 6330 5986 280 234 39 13 chr4 157832967 157833044 -44495303 + MLT1L LTR MaLR 1 79 -536 39317 51 27 1 chr4 157933297 157939295 -44389052 - L1PA2 LINE L1 0 6155 2 1354 133 47 13 chr4 157939572 157939722 -44388625 - L1MA10 LINE L1 -348 5943 5781 429 90 0 0 chr4 157939722 157939789 -44388558 + (TG)n Simple_repeat Simple_repeat 2 68 0 1354 133 47 13 chr4 157939789 157939872 -44388475 - L1MA10 LINE L1 -510 5781 5702 * 1588 153 84 23 chr4 157939869 157940215 -44388132 + L1MA9 LINE L1 5944 6310 -2 336 94 0 0 chr4 157940420 157940473 -44387874 + (GA)n Simple_repeat Simple_repeat 1 53 0 306 250 118 0 chr4 157940534 157940610 -44387737 + MIR SINE MIR 60 144 -64 2146 89 0 38 chr4 157941425 157941761 -44386586 + AluY SINE Alu 1 325 0 2111 126 7 0 chr4 157944684 157944977 -44383370 - AluSx SINE Alu -17 295 1 313 281 38 91 chr4 157947492 157947701 -44380646 - MIR SINE MIR -55 207 9 2389 104 0 0 chr4 157948074 157948383 -44379964 + AluSc SINE Alu 1 309 0 254 337 86 12 chr4 157950818 157950981 -44377366 + MIR SINE MIR 82 256 -6 409 272 96 16 chr4 157951001 157951126 -44377221 - L2 LINE L2 -4 3309 3175 474 301 156 42 chr4 157951649 157952034 -44376313 + L1MC4 LINE L1 7605 8033 -9 398 141 42 0 chr4 157952225 157952296 -44376051 - MLT1A1 LTR MaLR 0 365 292 * 402 267 58 110 chr4 157952292 157952637 -44375710 + MLT1F1 LTR MaLR 67 393 -174 296 133 0 0 chr4 157952660 157952705 -44375642 - MLT1B LTR MaLR -6 384 340 651 183 92 0 chr4 157952806 157952937 -44375410 - MLT1B LTR MaLR -228 162 20 633 206 43 0 chr4 157952963 157953104 -44375243 + MLT1F1 LTR MaLR 421 567 0 1840 186 42 21 chr4 157953151 157953629 -44374718 - Looper DNA T2_type -125 1433 946 1858 171 3 14 chr4 157954326 157954670 -44373677 - MER47A DNA MER2_type -1 365 26 588 282 102 14 chr4 157956670 157956886 -44371461 + MIR SINE MIR 12 246 -16 1873 154 3 35 chr4 157957272 157957584 -44370763 + AluJo SINE Alu 1 302 -10 25 51 0 0 chr4 157957635 157957674 -44370673 + AT_rich Low_complexity Low_complexity 1 39 0 198 0 0 0 chr4 157958622 157958644 -44369703 + (A)n Simple_repeat Simple_repeat 1 22 0 617 185 30 0 chr4 157959573 157959708 -44368639 - MER3 DNA MER1_type -70 139 1 1066 128 7 0 chr4 157960055 157960204 -44368143 + AluSq SINE Alu 1 150 -162 1182 71 0 0 chr4 157960357 157960498 -44367849 + AluSq SINE Alu 159 299 -14 789 250 105 28 chr4 157960518 157961026 -44367321 + L1MC3 LINE L1 5479 6058 -106 1860 157 35 26 chr4 157961482 157961827 -44366520 + MER61C LTR ERV1 86 433 -1 628 198 0 84 chr4 157961844 157962011 -44366336 + MER61C-int LTR ERV1 18 170 -5047 1064 154 4 130 chr4 157962079 157962411 -44365936 + MER61C-int LTR ERV1 182 764 -4763 3283 185 87 68 chr4 157962411 157963181 -44365166 + MER61C-int LTR ERV1 413 1128 -4089 1975 109 64 0 chr4 157963181 157963464 -44364883 - AluSp SINE Alu -12 301 1 3283 185 87 68 chr4 157963464 157963988 -44364359 + MER61C-int LTR ERV1 1128 1640 -3577 * 14320 156 87 62 chr4 157963973 157965175 -44363172 + MER61C-int LTR ERV1 1978 3148 -2069 1083 99 0 0 chr4 157965175 157965317 -44363030 + AluSp/q SINE Alu 164 305 -8 14320 156 87 62 chr4 157965317 157967134 -44361213 + MER61C-int LTR ERV1 3148 5217 0 1921 142 59 9 chr4 157967151 157967474 -44360873 + MER61C LTR ERV1 86 424 -10 22 0 0 0 chr4 157967987 157968009 -44360338 + AT_rich Low_complexity Low_complexity 1 22 0 2342 92 34 53 chr4 157970925 157971158 -44357189 + L1MA5A LINE L1 5889 6112 -185 1840 140 36 4 chr4 157971158 157971437 -44356910 + AluJb SINE Alu 1 288 -24 2342 92 34 53 chr4 157971437 157971617 -44356730 + L1MA5A LINE L1 6112 6294 -3 211 380 93 9 chr4 157971748 157971856 -44356491 - L2 LINE L2 -34 3238 3122 230 325 62 12 chr4 157971912 157971992 -44356355 - L2 LINE L2 -67 3205 3122 200 347 67 13 chr4 157972050 157972125 -44356222 - L2 LINE L2 -68 3204 3126 189 355 149 8 chr4 157972158 157972279 -44356068 - MIR3 SINE MIR -35 173 36 191 246 92 31 chr4 157972315 157972380 -44355967 + MIR SINE MIR 187 255 -7 4059 260 157 31 chr4 157972638 157974540 -44353807 + L2 LINE L2 1039 3172 -141 1717 197 116 3 chr4 157974544 157974925 -44353422 - MER63B DNA MER1_type -1 435 12 297 228 54 54 chr4 157974943 157975035 -44353312 + L2 LINE L2 3222 3313 0 247 284 129 26 chr4 157975964 157976080 -44352267 - MIR SINE MIR -74 188 61 328 262 178 31 chr4 157978573 157978798 -44349549 + L1ME4a LINE L1 5851 6108 -13 1907 139 31 0 chr4 157979251 157979539 -44348808 - AluJo SINE Alu -13 299 3 1222 110 0 0 chr4 157979668 157979832 -44348515 + AluSp SINE Alu 148 311 -2 303 23 0 0 chr4 157980320 157980363 -44347984 - L1PA2 LINE L1 0 6155 6113 239 338 0 13 chr4 157980914 157980991 -44347356 - MIR SINE MIR -155 107 32 267 189 0 0 chr4 157981444 157981497 -44346850 + (TA)n Simple_repeat Simple_repeat 2 54 0 306 333 53 9 chr4 157981772 157981886 -44346461 - MIR SINE MIR -56 206 88 2289 137 65 12 chr4 157982822 157983223 -44345124 + MSTB LTR MaLR 1 422 -4 368 141 84 0 chr4 157984261 157984332 -44344015 + L1MB8 LINE L1 6093 6169 -9 1477 181 0 36 chr4 157985114 157985391 -44342956 + AluSx SINE Alu 1 267 -45 180 0 0 0 chr4 157985501 157985521 -44342826 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 725 215 27 27 chr4 157985521 157985670 -44342677 + MLT1J LTR MaLR 64 212 -299 29 0 0 0 chr4 157986083 157986112 -44342235 + AT_rich Low_complexity Low_complexity 1 29 0 2026 125 4 0 chr4 157986393 157986698 -44341649 + AluSx SINE Alu 3 308 0 2310 160 25 40 chr4 157986850 157987324 -44341023 - MLT1C LTR MaLR 0 467 1 1993 141 3 10 chr4 157988919 157989224 -44339123 - AluJb SINE Alu -9 303 1 311 329 100 19 chr4 157990033 157990243 -44338104 + MIR SINE MIR 4 230 -32 268 290 60 0 chr4 157990928 157991028 -44337319 - Charlie8 DNA MER1_type -2308 109 4 24 0 0 0 chr4 157991092 157991116 -44337231 + AT_rich Low_complexity Low_complexity 1 24 0 5253 157 72 21 chr4 157991816 157993881 -44334466 + L1MA4 LINE L1 4122 6297 -3 191 308 0 0 chr4 157994491 157994543 -44333804 - L2 LINE L2 -5 3267 3216 451 291 174 35 chr4 157996481 157996711 -44331636 + MIR SINE MIR 1 262 0 343 208 89 30 chr4 157997709 157997810 -44330537 + L3 LINE CR1 1367 1473 -104 354 350 7 36 chr4 157997887 157998027 -44330320 - L2 LINE L2 -1 3271 3136 268 323 54 32 chr4 157998378 157998564 -44329783 - L2 LINE L2 -657 2657 2468 1042 181 97 40 chr4 157998695 157998993 -44329354 + MER33 DNA MER1_type 10 324 0 189 333 17 0 chr4 157999589 157999649 -44328698 + L3 LINE CR1 1515 1575 -2 374 195 203 0 chr4 157999780 157999898 -44328449 - L2 LINE L2 -3 3310 3169 355 248 15 66 chr4 157999972 158000109 -44328238 - MIR SINE MIR -24 238 109 441 326 70 0 chr4 158000462 158000591 -44327756 + L2 LINE L2 3134 3271 -1 369 307 123 34 chr4 158002187 158002398 -44325949 - MIR SINE MIR -32 230 5 382 285 182 12 chr4 158002656 158002821 -44325526 + L2 LINE L2 2576 2768 -546 1917 129 14 4 chr4 158003268 158003569 -44324778 - AluSx SINE Alu 0 304 1 277 261 70 52 chr4 158003743 158003858 -44324489 + L2 LINE L2 3156 3272 0 509 0 16 0 chr4 158004495 158004556 -44323791 + (TCTA)n Simple_repeat Simple_repeat 2 63 0 22 70 0 0 chr4 158005414 158005457 -44322890 + AT_rich Low_complexity Low_complexity 1 43 0 2088 156 49 40 chr4 158006165 158006594 -44321753 + Tigger2a DNA MER2_type 1 433 -1 26 0 0 0 chr4 158006884 158006910 -44321437 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 158007095 158007116 -44321231 + AT_rich Low_complexity Low_complexity 1 21 0 527 296 30 18 chr4 158007998 158008167 -44320180 + MIR SINE MIR 80 250 -12 333 0 0 0 chr4 158009026 158009063 -44319284 + (TG)n Simple_repeat Simple_repeat 2 38 0 5086 25 0 0 chr4 158010167 158010761 -44317586 + L1PA2 LINE L1 5562 6155 0 222 37 0 0 chr4 158011086 158011113 -44317234 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 56 0 0 chr4 158012362 158012398 -44315949 + AT_rich Low_complexity Low_complexity 1 36 0 326 289 111 83 chr4 158013083 158013263 -44315084 + L2 LINE L2 3076 3260 -12 21 0 0 0 chr4 158013323 158013344 -44315003 + AT_rich Low_complexity Low_complexity 1 21 0 308 274 64 20 chr4 158013678 158013801 -44314546 + MIR SINE MIR 35 164 -44 1981 142 0 3 chr4 158013970 158014265 -44314082 - AluSq SINE Alu -19 294 1 1295 130 56 0 chr4 158014350 158014581 -44313766 + L1MA5A LINE L1 6050 6293 -4 36 40 0 0 chr4 158014582 158014632 -44313715 + AT_rich Low_complexity Low_complexity 1 50 0 277 278 53 73 chr4 158014739 158014890 -44313457 - L2 LINE L2 -44 3269 3122 2396 71 0 0 chr4 158015633 158015929 -44312418 - AluY SINE Alu -15 296 1 2592 109 2 15 chr4 158016808 158017210 -44311137 - Tigger4(Zombi) DNA MER2_type -2 2729 2333 1451 162 13 0 chr4 158017212 158017440 -44310907 - Tigger4(Zombi) DNA MER2_type -2500 231 1 1560 186 118 9 chr4 158017488 158017946 -44310401 - Charlie4a DNA MER1_type 0 508 1 830 212 0 30 chr4 158022914 158023079 -44305268 - FAM SINE Alu -15 160 1 1597 144 53 0 chr4 158023092 158023376 -44304971 - L1MA3 LINE L1 0 6305 6007 223 296 88 40 chr4 158023770 158023895 -44304452 - MIR SINE MIR -67 195 65 2055 121 0 19 chr4 158025518 158025825 -44302522 - AluSc SINE Alu -8 301 1 239 396 52 7 chr4 158025886 158026040 -44302307 - MIR SINE MIR -68 194 34 385 333 47 23 chr4 158026375 158026546 -44301801 - MIR3 SINE MIR -1 207 33 2271 116 0 0 chr4 158027221 158027524 -44300823 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr4 158027556 158027585 -44300762 + AT_rich Low_complexity Low_complexity 1 29 0 364 298 36 52 chr4 158029137 158029385 -44298962 - L2 LINE L2 -102 3211 2968 266 236 73 20 chr4 158030230 158030388 -44297959 + L1P5 LINE L1 5410 5581 -568 2689 125 26 7 chr4 158030462 158030877 -44297470 + MSTA LTR MaLR 6 428 0 313 295 108 0 chr4 158030977 158031106 -44297241 + L1ME3A LINE L1 5773 5915 -255 502 161 0 0 chr4 158032122 158032215 -44296132 - L1MB7 LINE L1 -16 6168 6076 3028 144 52 2 chr4 158032237 158032757 -44295590 - L1MB7 LINE L1 -255 5929 5384 1813 138 0 4 chr4 158033024 158033293 -44295054 + AluJo SINE Alu 33 300 -12 263 271 94 10 chr4 158034307 158034403 -44293944 - L2 LINE L2 0 3272 3169 255 234 109 26 chr4 158034403 158034588 -44293759 - MIR SINE MIR -2 260 5 1928 138 14 3 chr4 158035497 158035794 -44292553 + AluSg SINE Alu 4 303 -7 28 0 0 0 chr4 158036009 158036037 -44292310 + AT_rich Low_complexity Low_complexity 1 28 0 221 245 19 0 chr4 158037443 158037496 -44290851 + GA-rich Low_complexity Low_complexity 1 54 0 377 278 47 47 chr4 158038343 158038512 -44289835 - MIR3 SINE MIR -3 205 37 247 279 12 35 chr4 158038841 158038927 -44289420 + MLT1J2 LTR MaLR 59 142 -308 436 204 86 118 chr4 158039051 158039272 -44289075 + MLT1J LTR MaLR 277 490 -21 849 247 5 11 chr4 158040051 158040241 -44288106 - MER46A DNA MER2_type 0 236 48 2224 104 3 0 chr4 158043480 158043778 -44284569 + AluSx SINE Alu 4 302 -10 353 333 29 41 chr4 158045186 158045357 -44282990 + MER5B DNA MER1_type 1 169 -9 515 310 26 26 chr4 158045375 158045607 -44282740 - MER102b DNA MER1_type -13 328 97 1103 270 72 36 chr4 158045734 158046233 -44282114 + MLT1H LTR MaLR 2 549 0 1518 190 13 40 chr4 158046291 158046591 -44281756 + AluJb SINE Alu 3 294 -18 286 287 52 59 chr4 158046718 158046854 -44281493 + MLT1-int LTR MaLR 410 544 -827 309 262 36 0 chr4 158048748 158048832 -44279515 + MIR SINE MIR 32 118 -144 1320 190 95 64 chr4 158049197 158049650 -44278697 - MLT1C LTR MaLR 0 467 1 264 276 92 20 chr4 158049938 158050036 -44278311 - MIR SINE MIR -108 154 50 380 276 137 89 chr4 158050039 158050398 -44277949 - L2 LINE L2 0 3313 2938 189 342 66 33 chr4 158050415 158050567 -44277780 + L2 LINE L2 2797 2953 -361 288 111 0 0 chr4 158051057 158051102 -44277245 + (CA)n Simple_repeat Simple_repeat 2 46 0 2115 121 3 7 chr4 158051876 158052182 -44276165 + AluSg SINE Alu 1 305 -5 349 276 61 0 chr4 158052413 158052511 -44275836 - MIR SINE MIR -19 243 140 429 258 104 18 chr4 158052647 158052810 -44275537 + MLT1J LTR MaLR 3 179 -332 2383 80 3 0 chr4 158052840 158053140 -44275207 - AluY SINE Alu -10 301 1 264 214 180 34 chr4 158054014 158054103 -44274244 + L2 LINE L2 3196 3297 -16 24 0 0 0 chr4 158054226 158054250 -44274097 + AT_rich Low_complexity Low_complexity 1 24 0 242 192 0 39 chr4 158054390 158054442 -44273905 + (CATATA)n Simple_repeat Simple_repeat 2 51 0 187 305 144 25 chr4 158055366 158055484 -44272863 - MIR SINE MIR -111 151 20 1410 192 6 67 chr4 158057242 158057570 -44270777 + AluJo SINE Alu 3 310 -2 215 178 22 0 chr4 158057636 158057681 -44270666 + (TAA)n Simple_repeat Simple_repeat 2 47 0 277 312 70 32 chr4 158057933 158058090 -44270257 - L2 LINE L2 -437 2877 2715 631 261 82 15 chr4 158058393 158058588 -44269759 - MIR SINE MIR -21 241 34 993 240 148 29 chr4 158060076 158060588 -44267759 - L1ME4a LINE L1 -36 6085 5513 24 67 0 0 chr4 158061039 158061084 -44267263 + AT_rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr4 158062765 158062796 -44265551 + AT_rich Low_complexity Low_complexity 1 31 0 335 301 42 26 chr4 158063373 158063517 -44264830 + MIR SINE MIR 45 187 -68 189 0 0 0 chr4 158064200 158064221 -44264126 + (CA)n Simple_repeat Simple_repeat 1 21 0 486 296 82 31 chr4 158064768 158065534 -44262813 + L1ME3A LINE L1 5042 5864 -306 23 0 0 0 chr4 158065823 158065846 -44262501 + AT_rich Low_complexity Low_complexity 1 23 0 299 214 154 26 chr4 158067209 158067326 -44261021 - L1ME4a LINE L1 -15 6106 5975 26 0 0 0 chr4 158067421 158067447 -44260900 + AT_rich Low_complexity Low_complexity 1 26 0 942 213 64 34 chr4 158067690 158067925 -44260422 - MIR SINE MIR 0 262 21 305 289 0 78 chr4 158068064 158068156 -44260191 - L1ME4a LINE L1 -2361 5447 5368 2433 82 0 3 chr4 158068156 158068459 -44259888 - AluSq SINE Alu -11 302 1 305 289 0 78 chr4 158068459 158068508 -44259839 - L1ME4a LINE L1 -2440 5368 5317 212 250 0 0 chr4 158068660 158068700 -44259647 + (CATG)n Simple_repeat Simple_repeat 3 42 0 184 318 47 68 chr4 158069024 158069172 -44259175 - L3b LINE CR1 -88 1495 1351 541 249 81 34 chr4 158070072 158070285 -44258062 - MIR SINE MIR 0 262 37 341 276 43 38 chr4 158071609 158071794 -44256553 + MLT1K LTR MaLR 400 585 -3 2588 131 41 5 chr4 158072009 158072422 -44255925 + MSTA LTR MaLR 1 428 0 532 127 136 0 chr4 158072563 158072673 -44255674 - L1MB3 LINE L1 -9 6174 6050 182 321 86 21 chr4 158074729 158074869 -44253478 + L2 LINE L2 2916 3064 -208 1983 113 14 34 chr4 158075102 158075395 -44252952 - AluSx SINE Alu -25 287 1 2502 234 72 11 chr4 158075481 158076288 -44252059 + L1ME1 LINE L1 5285 6140 -26 23 0 0 0 chr4 158076624 158076647 -44251700 + AT_rich Low_complexity Low_complexity 1 23 0 789 314 103 13 chr4 158076706 158077302 -44251045 - L2 LINE L2 0 3313 2664 281 326 0 21 chr4 158077319 158077414 -44250933 + MIR SINE MIR 54 146 -116 367 304 38 38 chr4 158077911 158078069 -44250278 + MIR3 SINE MIR 51 208 0 293 109 0 0 chr4 158078240 158078286 -44250061 + MADE1 DNA Mariner 35 80 0 1944 150 3 0 chr4 158078461 158078747 -44249600 - AluSx SINE Alu -2 310 24 831 203 98 40 chr4 158079230 158079506 -44248841 + L1MC4 LINE L1 6810 7101 -941 655 185 93 152 chr4 158079487 158080175 -44248172 + L1MD3 LINE L1 7240 7980 -15 * 30 27 0 0 chr4 158082007 158082044 -44246303 + AT_rich Low_complexity Low_complexity 1 37 0 268 194 51 92 chr4 158082917 158083015 -44245332 - MIR3 SINE MIR -33 175 82 1923 180 47 82 chr4 158083373 158084011 -44244336 - Charlie1 DNA MER1_type 0 2761 2146 304 274 85 20 chr4 158085026 158085179 -44243168 - MIR SINE MIR -1 261 99 319 298 97 17 chr4 158088663 158088827 -44239520 - MIR SINE MIR -56 206 25 400 322 9 0 chr4 158089259 158089374 -44238973 - L2 LINE L2 0 3272 3157 332 252 33 60 chr4 158089444 158089595 -44238752 - MIR SINE MIR -1 261 115 1310 138 19 5 chr4 158089651 158089861 -44238486 - MER20 DNA MER1_type -4 215 3 1779 202 26 24 chr4 158091254 158091714 -44236633 + L1M4 LINE L1 3525 3985 -2161 5029 126 57 23 chr4 158091927 158092562 -44235785 + Tigger3b DNA MER2_type 1 683 -2345 2123 103 4 4 chr4 158092562 158092869 -44235478 - AluSg SINE Alu 0 307 1 5029 126 57 23 chr4 158092869 158093201 -44235146 + Tigger3b DNA MER2_type 683 1002 -229 2572 95 24 11 chr4 158093203 158093582 -44234765 - L1PA11 LINE L1 -3 6171 5788 446 366 53 4 chr4 158093699 158093926 -44234421 - L3 LINE CR1 -986 591 354 236 218 217 18 chr4 158094834 158094943 -44233404 - MIR SINE MIR -60 148 31 292 237 0 52 chr4 158096196 158096293 -44232054 + G-rich Low_complexity Low_complexity 5 96 0 288 0 0 0 chr4 158097019 158097051 -44231296 + (A)n Simple_repeat Simple_repeat 1 32 0 18577 182 87 25 chr4 158098141 158102944 -44225403 - L1PA12 LINE L1 -765 6819 903 1761 188 0 3 chr4 158102953 158103241 -44225106 - AluJb SINE Alu -22 290 4 1266 135 143 4 chr4 158103244 158103488 -44224859 + Tigger3b DNA MER2_type 955 1232 0 305 282 139 87 chr4 158104676 158105123 -44223224 + L1M2 LINE L1 757 1226 -5623 209 250 0 16 chr4 158105218 158105282 -44223065 + (CCCCG)n Simple_repeat Simple_repeat 2 64 0 26 64 0 0 chr4 158105464 158105511 -44222836 + GC_rich Low_complexity Low_complexity 1 47 0 28 29 0 0 chr4 158105566 158105601 -44222746 + GC_rich Low_complexity Low_complexity 1 35 0 309 51 0 0 chr4 158106884 158106923 -44221424 + (CA)n Simple_repeat Simple_repeat 2 40 0 302 140 0 0 chr4 158109225 158109282 -44219065 + Alu SINE Alu 246 302 0 2273 96 3 0 chr4 158110275 158110566 -44217781 + AluSp SINE Alu 2 293 -20 387 0 0 0 chr4 158110575 158110618 -44217729 + (TA)n Simple_repeat Simple_repeat 1 43 0 305 306 117 9 chr4 158111377 158111488 -44216859 + MIR SINE MIR 18 140 -122 473 108 0 0 chr4 158111606 158111671 -44216676 - AluS SINE Alu -248 65 1 1034 164 16 16 chr4 158111922 158112111 -44216236 - MER5A DNA MER1_type 0 189 1 21 0 0 0 chr4 158112445 158112466 -44215881 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr4 158112532 158112556 -44215791 + (T)n Simple_repeat Simple_repeat 1 24 0 735 159 8 8 chr4 158112571 158112697 -44215650 - FLAM_C SINE Alu -13 130 5 821 134 13 7 chr4 158112930 158113079 -44215268 - L1MB3 LINE L1 -1 6182 6033 518 76 8 2 chr4 158113857 158114107 -44214240 + AluSp SINE Alu 1 294 -19 2213 118 3 3 chr4 158114757 158115061 -44213286 - AluSx SINE Alu -8 304 1 527 145 40 8 chr4 158115279 158115403 -44212944 + CT-rich Low_complexity Low_complexity 1 128 0 222 189 0 0 chr4 158115403 158115440 -44212907 + polypyrimidine Low_complexity Low_complexity 1 37 0 * 267 250 0 0 chr4 158115422 158115482 -44212865 + CT-rich Low_complexity Low_complexity 2 61 0 305 242 99 0 chr4 158116834 158116925 -44211422 + L3b LINE CR1 1392 1491 -92 875 210 39 17 chr4 158117171 158117352 -44210995 + MIR SINE MIR 3 187 -75 609 292 87 35 chr4 158117739 158118164 -44210183 + MLT1J2 LTR MaLR 1 447 -3 817 198 8 125 chr4 158120592 158120840 -44207507 - MER20 DNA MER1_type 0 219 1 2051 143 10 0 chr4 158121022 158121329 -44207018 + AluSx SINE Alu 1 310 -2 2030 121 56 12 chr4 158121729 158122052 -44206295 + MER1B DNA MER1_type 1 337 0 1583 190 10 17 chr4 158122842 158123142 -44205205 + AluJo SINE Alu 1 298 -14 192 382 37 15 chr4 158124212 158124348 -44203999 - L2 LINE L2 -214 3058 2920 274 332 70 36 chr4 158125147 158125421 -44202926 + L2 LINE L2 2775 3058 -214 445 236 81 0 chr4 158125583 158125706 -44202641 + L2 LINE L2 3181 3313 0 894 278 72 41 chr4 158126077 158126451 -44201896 + L1ME3A LINE L1 4504 4865 -1281 1574 176 0 36 chr4 158126451 158126752 -44201595 + AluJo SINE Alu 6 295 -17 894 278 72 41 chr4 158126752 158127222 -44201125 + L1ME3A LINE L1 4865 5374 -772 2225 128 0 3 chr4 158127302 158127615 -44200732 - AluSx SINE Alu 0 312 1 341 278 95 16 chr4 158127813 158127939 -44200408 + L1ME3A LINE L1 5813 5948 -222 941 250 80 17 chr4 158127979 158128279 -44200068 - LTR16A LTR ERVL -4 446 128 866 304 73 13 chr4 158128288 158128669 -44199678 + MLT1I LTR MaLR 5 408 -1 357 264 38 19 chr4 158128830 158128989 -44199358 - MER103 DNA DNA -2 164 3 185 273 0 23 chr4 158129410 158129454 -44198893 - MIR SINE MIR -109 99 57 23 33 0 0 chr4 158130159 158130189 -44198158 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 158132188 158132209 -44196138 + AT_rich Low_complexity Low_complexity 1 21 0 1180 250 83 40 chr4 158132373 158132769 -44195578 + MLT1H LTR MaLR 44 456 -93 1811 170 7 0 chr4 158133026 158133309 -44195038 + AluJo SINE Alu 1 285 -27 701 155 31 0 chr4 158133584 158133713 -44194634 + L1MA5 LINE L1 3461 3593 -2553 8195 158 39 36 chr4 158133730 158135651 -44192696 + L1MA5 LINE L1 3797 5718 -582 315 71 0 0 chr4 158135651 158135693 -44192654 + (TA)n Simple_repeat Simple_repeat 1 42 0 8195 158 39 36 chr4 158135693 158136273 -44192074 + L1MA5 LINE L1 5718 6295 -5 2144 108 6 16 chr4 158136289 158136604 -44191743 + AluSx SINE Alu 1 312 0 397 333 69 6 chr4 158138198 158138357 -44189990 + MIR SINE MIR 48 216 -46 24 0 0 0 chr4 158138481 158138505 -44189842 + AT_rich Low_complexity Low_complexity 1 24 0 2539 124 8 2 chr4 158138508 158138902 -44189445 - L1PA15 LINE L1 -13 6152 5757 354 173 0 13 chr4 158139061 158139136 -44189211 - MSTA LTR MaLR -354 74 1 * 2793 107 0 0 chr4 158139136 158139525 -44188822 + MER1A DNA MER1_type 141 529 0 393 354 44 33 chr4 158139613 158139977 -44188370 + L2 LINE L2 2594 2961 -353 990 230 102 14 chr4 158140098 158140381 -44187966 - MLT1J2 LTR MaLR -126 324 17 188 217 0 0 chr4 158140397 158140443 -44187904 + L2 LINE L2 3227 3272 0 1028 102 21 48 chr4 158140742 158140885 -44187462 + L1P4 LINE L1 5294 5432 -733 2140 128 0 16 chr4 158140885 158141191 -44187156 + AluSx SINE Alu 1 301 -11 1028 102 21 48 chr4 158141191 158141234 -44187113 + L1P4 LINE L1 5432 5475 -690 188 250 0 88 chr4 158141355 158141435 -44186912 - MIR SINE MIR -50 212 140 265 332 148 21 chr4 158141447 158141730 -44186617 + L2 LINE L2 571 889 -2425 243 302 0 0 chr4 158141879 158141942 -44186405 - L2 LINE L2 -1 3271 3209 274 284 88 47 chr4 158142158 158142373 -44185974 + L2 LINE L2 1235 1458 -1856 308 111 83 56 chr4 158142431 158142503 -44185844 + MLT1A1 LTR MaLR 1 74 -291 239 296 160 24 chr4 158142896 158143021 -44185326 + MIR3 SINE MIR 51 192 -16 187 314 68 25 chr4 158143722 158143840 -44184507 + MIR SINE MIR 28 150 -112 * 998 293 94 6 chr4 158143838 158144189 -44184158 - L2 LINE L2 0 3313 2932 267 170 0 0 chr4 158144214 158144261 -44184086 + MIR SINE MIR 159 205 -57 318 106 0 0 chr4 158144263 158144310 -44184037 + (TG)n Simple_repeat Simple_repeat 2 48 0 1769 189 0 0 chr4 158144311 158144597 -44183750 - AluJo SINE Alu -26 286 1 1935 135 37 0 chr4 158145310 158145606 -44182741 - AluSx SINE Alu -3 309 3 522 239 126 12 chr4 158146227 158146394 -44181953 - MER5A DNA MER1_type -3 186 1 1761 251 38 25 chr4 158146772 158147306 -44181041 - MLT1G LTR MaLR -72 523 7 44 20 0 0 chr4 158147312 158147363 -44180984 + AT_rich Low_complexity Low_complexity 1 51 0 370 208 40 38 chr4 158147409 158147526 -44180821 + L1ME3A LINE L1 5760 5878 -286 329 304 51 70 chr4 158148027 158148241 -44180106 - HAL1 LINE L1 -2296 211 2 319 100 17 0 chr4 158148319 158148379 -44179968 + HSMAR2 DNA Mariner 1242 1302 0 525 366 21 53 chr4 158148616 158148900 -44179447 - L2 LINE L2 0 3272 2998 337 220 40 20 chr4 158149770 158149870 -44178477 - MER103 DNA DNA -53 113 12 1084 198 122 70 chr4 158150262 158150706 -44177641 - MER69 DNA AcHobo -42 2484 2018 180 176 0 0 chr4 158150761 158150795 -44177552 + (TA)n Simple_repeat Simple_repeat 1 34 0 305 146 29 29 chr4 158150824 158150995 -44177352 + (TTATA)n Simple_repeat Simple_repeat 5 175 0 2188 96 0 0 chr4 158151350 158151664 -44176683 + AluSc SINE Alu 1 314 0 15255 89 22 15 chr4 158152720 158155772 -44172575 - L1PA7 LINE L1 -4 6465 3384 10883 116 26 46 chr4 158155772 158155800 -44172547 - L1PA7 LINE L1 -4204 2257 2230 2046 102 7 43 chr4 158155800 158156103 -44172244 - AluY SINE Alu -19 292 1 10883 116 26 46 chr4 158156103 158158320 -44170027 - L1PA7 LINE L1 -4231 2230 5 503 227 34 34 chr4 158158397 158158573 -44169774 - L1MC5 LINE L1 -46 7915 7740 1529 190 56 22 chr4 158160166 158160524 -44167823 + MLT1B LTR MaLR 21 390 0 2262 78 0 0 chr4 158160861 158161130 -44167217 + AluSx SINE Alu 14 282 -30 241 26 26 26 chr4 158161134 158161173 -44167174 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 267 396 32 7 chr4 158162521 158162675 -44165672 - L2 LINE L2 -227 3045 2888 22 56 0 0 chr4 158163232 158163268 -44165079 + AT_rich Low_complexity Low_complexity 1 36 0 1931 166 7 0 chr4 158163529 158163837 -44164510 + AluJb SINE Alu 1 310 -2 1063 174 91 27 chr4 158166973 158167192 -44161155 + Tigger7 DNA MER2_type 2 234 -2253 414 281 0 0 chr4 158167193 158167289 -44161058 + Tigger7 DNA MER2_type 2382 2477 -10 200 156 0 0 chr4 158167336 158167368 -44160979 - MIR SINE MIR -63 145 114 419 304 0 17 chr4 158167512 158167627 -44160720 - L2 LINE L2 0 3313 3201 25 0 0 0 chr4 158167724 158167749 -44160598 + AT_rich Low_complexity Low_complexity 1 25 0 225 332 84 55 chr4 158169547 158169749 -44158598 + MIR SINE MIR 10 217 -45 29988 116 21 56 chr4 158169783 158176153 -44152194 - L1PA7 LINE L1 -4 6150 12 22 35 0 0 chr4 158177643 158177672 -44150675 + AT_rich Low_complexity Low_complexity 1 29 0 343 276 122 13 chr4 158178161 158178317 -44150030 + L1ME4a LINE L1 5725 5897 -224 267 229 118 42 chr4 158178348 158178492 -44149855 + L1ME4a LINE L1 5950 6104 -17 2068 93 0 4 chr4 158178569 158178827 -44149520 - AluSc SINE Alu -52 257 1 415 344 100 29 chr4 158178984 158179039 -44149308 - L2 LINE L2 -493 2821 2771 324 328 39 0 chr4 158179039 158179167 -44149180 - MER94 DNA DNA -1 133 1 415 344 100 29 chr4 158179167 158179352 -44148995 - L2 LINE L2 -543 2771 2564 828 180 122 16 chr4 158179477 158179666 -44148681 + MER3 DNA MER1_type 1 209 0 207 0 0 0 chr4 158180023 158180046 -44148301 + (TA)n Simple_repeat Simple_repeat 2 24 0 2952 179 4 8 chr4 158182050 158182547 -44145800 - MLT2B2 LTR ERVL -8 507 13 202 194 0 0 chr4 158182550 158182586 -44145761 + GA-rich Low_complexity Low_complexity 1 36 0 291 279 131 11 chr4 158183244 158183438 -44144909 + L1M4 LINE L1 3357 3581 -2565 234 234 27 45 chr4 158183470 158183581 -44144766 + L1M4 LINE L1 3685 3793 -2353 * 475 278 20 51 chr4 158183574 158183829 -44144518 + L1M4 LINE L1 4970 5216 -930 878 286 139 21 chr4 158184092 158184522 -44143825 - LTR33 LTR ERVL -6 515 35 710 276 136 72 chr4 158184760 158184857 -44143490 - LTR67 LTR ERVL -7 550 461 780 200 184 59 chr4 158184857 158184937 -44143410 + AluJo SINE Alu 2 71 -231 2167 110 0 7 chr4 158184937 158185238 -44143109 + AluSg SINE Alu 1 299 -11 780 200 184 59 chr4 158185238 158185412 -44142935 + AluJo SINE Alu 71 288 -14 710 276 136 72 chr4 158185412 158185829 -44142518 - LTR67 LTR ERVL -96 461 3 207 283 0 0 chr4 158187214 158187260 -44141087 - MIR SINE MIR -9 253 208 335 272 98 11 chr4 158187319 158187411 -44140936 + L2 LINE L2 3200 3299 -14 192 158 0 0 chr4 158188330 158188368 -44139979 - L2 LINE L2 0 3313 3276 795 235 118 101 chr4 158188947 158189432 -44138915 - MLT1H LTR MaLR -4 545 53 22 35 0 0 chr4 158189690 158189719 -44138628 + AT_rich Low_complexity Low_complexity 1 29 0 249 316 149 34 chr4 158189869 158190138 -44138209 + L2 LINE L2 2149 2448 -866 1696 141 59 7 chr4 158190154 158190424 -44137923 - AluJo SINE Alu -26 286 3 288 0 0 0 chr4 158190441 158190473 -44137874 + (TTA)n Simple_repeat Simple_repeat 2 33 0 722 126 0 9 chr4 158190473 158190584 -44137763 - AluJb SINE Alu -194 118 9 256 74 76 57 chr4 158191562 158191637 -44136710 + FLAM SINE Alu 64 110 -23 5556 123 25 13 chr4 158192456 158193357 -44134990 + L1MA9 LINE L1 5273 6184 -128 747 108 146 15 chr4 158193358 158193488 -44134859 + THE1C LTR MaLR 1 147 -228 428 102 0 0 chr4 158193486 158193545 -44134802 + MSTA LTR MaLR 370 428 0 * 800 114 8 0 chr4 158193545 158193676 -44134671 + L1MA9 LINE L1 6181 6312 0 303 330 64 51 chr4 158193703 158193939 -44134408 + L2 LINE L2 1752 1990 -1324 3388 132 13 11 chr4 158194017 158194570 -44133777 + L1MC1 LINE L1 5780 6333 0 223 311 122 27 chr4 158194760 158194908 -44133439 + L2 LINE L2 3132 3293 -20 189 0 0 0 chr4 158194908 158194929 -44133418 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 333 213 60 67 chr4 158195050 158195200 -44133147 + MER53 DNA DNA 2 150 -39 305 183 61 12 chr4 158195190 158195272 -44133075 - MER53 DNA DNA -84 105 20 * 569 170 19 0 chr4 158195525 158195631 -44132716 - L1MB8 LINE L1 -6 6172 6065 22 88 0 0 chr4 158195639 158195696 -44132651 + AT_rich Low_complexity Low_complexity 1 57 0 1940 156 24 3 chr4 158195796 158196129 -44132218 - L1MB8 LINE L1 -110 6068 5729 1975 143 10 0 chr4 158196590 158196884 -44131463 + AluSx SINE Alu 1 297 -15 1907 150 0 7 chr4 158197498 158197826 -44130521 + AluSx SINE Alu 1 326 0 1612 188 40 0 chr4 158197832 158198130 -44130217 + AluJb SINE Alu 1 310 -2 1271 195 77 56 chr4 158198363 158198456 -44129891 - MER2 DNA MER2_type 0 345 255 426 73 15 0 chr4 158198456 158198524 -44129823 + L1PA15 LINE L1 6084 6152 -13 1271 195 77 56 chr4 158198524 158198768 -44129579 - MER2 DNA MER2_type -90 255 1 314 244 96 17 chr4 158198860 158198975 -44129372 - MER104 DNA Tc2 -51 129 6 267 316 64 9 chr4 158199395 158199538 -44128809 - MIR SINE MIR -67 141 19 325 195 125 78 chr4 158200381 158200509 -44127838 - L2 LINE L2 -1 3312 3179 189 0 0 0 chr4 158200534 158200555 -44127792 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 434 340 37 75 chr4 158200605 158200899 -44127448 + L2 LINE L2 2990 3272 0 201 229 0 0 chr4 158201109 158201157 -44127190 + (TG)n Simple_repeat Simple_repeat 2 49 0 438 318 243 0 chr4 158201377 158201566 -44126781 - MIR SINE MIR -25 237 3 36 40 0 0 chr4 158202468 158202518 -44125829 + AT_rich Low_complexity Low_complexity 1 50 0 741 77 0 0 chr4 158202603 158202694 -44125653 + 5S rRNA rRNA 1 91 -30 2037 125 10 13 chr4 158203013 158203326 -44125021 - AluSx SINE Alu 0 312 1 193 262 0 0 chr4 158204493 158204535 -44123812 - L2 LINE L2 -17 3255 3214 367 200 15 0 chr4 158204572 158204637 -44123710 - MIR SINE MIR 0 262 197 279 54 0 0 chr4 158204653 158204690 -44123657 + (CA)n Simple_repeat Simple_repeat 1 37 0 1368 132 24 62 chr4 158204934 158205140 -44123207 - L1MA8 LINE L1 -6 6285 6092 2165 122 0 0 chr4 158205140 158205428 -44122919 + AluSx SINE Alu 4 291 -21 1368 132 24 62 chr4 158205428 158205509 -44122838 - L1MA8 LINE L1 -199 6092 6009 763 164 164 17 chr4 158206163 158206340 -44122007 - MER3 DNA MER1_type -5 204 2 244 341 61 12 chr4 158207199 158207363 -44120984 - LTR16C LTR ERVL 0 491 320 409 306 45 6 chr4 158207670 158207827 -44120520 - MIR SINE MIR -14 248 86 2426 231 75 38 chr4 158208007 158209540 -44118807 - L1ME1 LINE L1 -35 6131 4542 21 0 0 0 chr4 158209903 158209924 -44118423 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 158209984 158210007 -44118340 + AT_rich Low_complexity Low_complexity 1 23 0 2316 92 0 19 chr4 158210175 158210489 -44117858 + AluY SINE Alu 1 308 -3 362 241 43 0 chr4 158212000 158212141 -44116206 + (TA)n Simple_repeat Simple_repeat 2 148 0 183 156 0 0 chr4 158212488 158212520 -44115827 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 227 366 148 0 chr4 158212706 158212807 -44115540 + L2 LINE L2 3126 3241 -31 2516 56 0 10 chr4 158213139 158213445 -44114902 + AluY SINE Alu 1 303 -8 1777 161 35 17 chr4 158213908 158214255 -44114092 + L1PA16 LINE L1 5814 6166 0 791 286 22 9 chr4 158214496 158214720 -44113627 + MIR SINE MIR 12 238 -24 22 56 0 0 chr4 158215081 158215117 -44113230 + AT_rich Low_complexity Low_complexity 1 36 0 1587 170 0 36 chr4 158215775 158215917 -44112430 + AluJo SINE Alu 1 130 -182 2236 112 3 0 chr4 158215917 158216213 -44112134 + AluSp SINE Alu 1 297 -16 1587 170 0 36 chr4 158216213 158216346 -44112001 + AluJo SINE Alu 130 266 -46 383 348 113 23 chr4 158216492 158216713 -44111634 + L1MC/D LINE L1 5355 5595 -2213 21 0 0 0 chr4 158217019 158217040 -44111307 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 158217141 158217164 -44111183 + AT_rich Low_complexity Low_complexity 1 23 0 351 300 64 0 chr4 158217413 158217523 -44110824 - MIR SINE MIR -65 197 81 275 333 188 0 chr4 158218432 158218576 -44109771 + MIR SINE MIR 52 222 -40 22 80 0 0 chr4 158219044 158219094 -44109253 + AT_rich Low_complexity Low_complexity 1 50 0 894 241 31 0 chr4 158220396 158220591 -44107756 + MER63A DNA MER1_type 3 203 -7 436 107 0 95 chr4 158220740 158220779 -44107568 + MADE1 DNA Mariner 1 29 -51 624 49 0 0 chr4 158220779 158220861 -44107486 - L1PA4 LINE L1 -4 6151 6070 436 107 0 95 chr4 158220861 158220905 -44107442 + MADE1 DNA Mariner 29 76 -4 235 143 71 10 chr4 158221220 158221318 -44107029 + (TA)n Simple_repeat Simple_repeat 1 104 0 933 129 0 22 chr4 158221384 158221523 -44106824 - FRAM SINE Alu -21 155 20 636 226 31 44 chr4 158221523 158221682 -44106665 - MER5A DNA MER1_type -31 158 2 368 303 26 53 chr4 158221682 158221834 -44106513 - L1ME3A LINE L1 -61 6109 5962 374 285 107 21 chr4 158221913 158222155 -44106192 - L1MC5 LINE L1 -465 7496 7234 2103 222 7 13 chr4 158222172 158222636 -44105711 - L1ME1 LINE L1 -4 6162 5702 595 256 265 29 chr4 158272717 158273195 -44055152 + L2 LINE L2 2728 3310 -3 303 135 27 14 chr4 158273199 158273273 -44055074 + CT-rich Low_complexity Low_complexity 5 79 0 3884 204 25 14 chr4 158274308 158275044 -44053303 - MER54A LTR ERVL -157 744 1 707 265 76 19 chr4 158275154 158275259 -44053088 + L1MEc LINE L1 1706 1804 -4411 2486 46 0 23 chr4 158275259 158275563 -44052784 - AluY SINE Alu -13 298 2 707 265 76 19 chr4 158275563 158276040 -44052307 + L1MEc LINE L1 1804 2289 -3926 8484 192 15 18 chr4 158276157 158276757 -44051590 + L1MB1 LINE L1 3520 4120 -2026 1255 214 161 13 chr4 158276757 158277155 -44051192 - MSTB2 LTR MaLR 0 457 1 8484 192 15 18 chr4 158277155 158278388 -44049959 + L1MB1 LINE L1 4120 5347 -799 3507 150 52 2 chr4 158278492 158279133 -44049214 + L1MB1 LINE L1 5496 6168 0 219 229 0 0 chr4 158280485 158280546 -44047801 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 235 291 107 19 chr4 158280560 158280663 -44047684 - L2 LINE L2 -12 3260 3149 275 327 42 36 chr4 158281050 158281215 -44047132 + L2 LINE L2 2655 2820 -494 323 316 46 59 chr4 158281286 158281438 -44046909 + L2 LINE L2 2937 3086 -186 214 327 18 0 chr4 158282443 158282498 -44045849 - L3b LINE CR1 -119 1464 1409 406 284 26 0 chr4 158283173 158283289 -44045058 - MIR3 SINE MIR -6 202 84 1665 144 0 0 chr4 158283905 158284141 -44044206 + THE1B LTR MaLR 3 238 -126 23 54 0 0 chr4 158285015 158285052 -44043295 + AT_rich Low_complexity Low_complexity 1 37 0 291 232 14 14 chr4 158286733 158286802 -44041545 + AluSg/x SINE Alu 115 183 -117 322 286 204 33 chr4 158287424 158287669 -44040678 + L1MEd LINE L1 1307 1593 -4937 309 243 134 55 chr4 158287675 158287877 -44040470 + HAL1 LINE L1 1302 1519 -988 347 303 128 32 chr4 158288012 158288769 -44039578 + L1MEd LINE L1 2392 3227 -3313 291 279 46 30 chr4 158288836 158289141 -44039206 + L1MEd LINE L1 3313 3622 -2918 233 151 19 0 chr4 158289320 158289373 -44038974 + CT-rich Low_complexity Low_complexity 3 56 0 476 250 0 0 chr4 158289785 158289885 -44038462 - Tigger3(Golem) DNA MER2_type -2929 100 1 183 42 0 0 chr4 158291254 158291278 -44037069 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 958 278 116 8 chr4 158291556 158291952 -44036395 - LTR16A LTR ERVL -5 445 7 1117 121 0 18 chr4 158292071 158292236 -44036111 - MER20 DNA MER1_type -57 162 1 2722 79 3 6 chr4 158292778 158293134 -44035213 - THE1A LTR MaLR 0 355 1 10970 104 27 1 chr4 158293134 158294675 -44033672 - THE1A-int LTR MaLR 0 1580 1 2723 99 0 0 chr4 158294675 158295030 -44033317 - THE1A LTR MaLR 0 355 1 736 196 53 49 chr4 158296628 158296853 -44031494 - L1ME3A LINE L1 -1 6169 5944 468 298 155 0 chr4 158299917 158300078 -44028269 + MER5A DNA MER1_type 4 189 0 1764 150 18 4 chr4 158300864 158301210 -44027137 - AluJb SINE Alu 0 350 1 469 182 38 98 chr4 158301369 158301400 -44026947 + L2 LINE L2 3190 3221 -92 2290 98 0 0 chr4 158301400 158301697 -44026650 - AluSx SINE Alu -15 297 1 469 182 38 98 chr4 158301697 158301797 -44026550 + L2 LINE L2 3221 3313 0 493 289 31 19 chr4 158303201 158303360 -44024987 + MIR SINE MIR 92 252 -10 2202 97 0 30 chr4 158303890 158304190 -44024157 + AluSc SINE Alu 1 291 -18 1986 197 220 21 chr4 158304245 158304900 -44023447 - LTR50 LTR ERVL -10 785 1 342 153 0 0 chr4 158305443 158305502 -44022845 + GA-rich Low_complexity Low_complexity 2 60 0 488 280 19 25 chr4 158305739 158305896 -44022451 + MER5B DNA MER1_type 20 175 -3 192 281 230 67 chr4 158305955 158306090 -44022257 - L2 LINE L2 -5 3267 3111 311 368 75 24 chr4 158306491 158306888 -44021459 - L2 LINE L2 -266 3006 2598 288 180 0 0 chr4 158307375 158307425 -44020922 + L2 LINE L2 3264 3313 0 437 289 160 27 chr4 158308376 158308639 -44019708 - LTR16A1 LTR ERVL 0 457 160 260 300 44 11 chr4 158310140 158310230 -44018117 + MIR SINE MIR 61 153 -55 301 312 37 0 chr4 158311512 158311621 -44016726 + MIR SINE MIR 39 151 -57 321 208 0 0 chr4 158311867 158311939 -44016408 + (TA)n Simple_repeat Simple_repeat 1 72 0 307 269 13 0 chr4 158312367 158312445 -44015902 + L1MC4 LINE L1 6614 6692 -1350 313 288 123 49 chr4 158312451 158312816 -44015531 - L1M4 LINE L1 -1070 5076 4685 26 50 0 0 chr4 158312982 158313022 -44015325 + AT_rich Low_complexity Low_complexity 1 40 0 415 257 40 96 chr4 158313245 158313587 -44014760 + L1MC/D LINE L1 5502 5821 -459 339 213 259 28 chr4 158313752 158313860 -44014487 + FAM SINE Alu 43 175 0 290 291 67 42 chr4 158314075 158314480 -44013867 - L1M4 LINE L1 -1480 4666 4252 23 0 0 0 chr4 158314496 158314519 -44013828 + AT_rich Low_complexity Low_complexity 1 23 0 5163 157 25 2 chr4 158314519 158315524 -44012823 - L1MB3 LINE L1 -3 6180 5154 4295 156 122 84 chr4 158315728 158316136 -44012211 - L1MC3 LINE L1 -179 7606 7215 313 284 0 0 chr4 158316136 158316217 -44012130 - MLT1F1 LTR MaLR -450 117 37 4295 156 122 84 chr4 158316217 158316856 -44011491 - L1MC3 LINE L1 -570 7215 6436 * 5645 214 32 61 chr4 158316853 158318206 -44010141 - L1MB3 LINE L1 -1477 4669 3278 2337 93 0 3 chr4 158318206 158318508 -44009839 - AluSq SINE Alu -12 301 1 5645 214 32 61 chr4 158318508 158318659 -44009688 - L1MB3 LINE L1 -2868 3278 3124 1856 158 0 26 chr4 158318659 158318962 -44009385 - AluSx SINE Alu -17 295 1 5645 214 32 61 chr4 158318962 158319594 -44008753 - L1MB3 LINE L1 -3022 3124 2596 1009 149 7 0 chr4 158319720 158319874 -44008473 - AluSg/x SINE Alu -10 300 146 463 312 6 23 chr4 158319885 158320058 -44008289 - L1MCb LINE L1 -5493 552 383 549 243 7 7 chr4 158320058 158320202 -44008145 - L1MCb LINE L1 -3287 3277 3134 1022 250 108 0 chr4 158320204 158320500 -44007847 - L1MCb LINE L1 -5709 336 9 303 355 26 26 chr4 158320546 158320698 -44007649 - L1M4 LINE L1 -3846 2300 2149 22 35 0 0 chr4 158320876 158320905 -44007442 + AT_rich Low_complexity Low_complexity 1 29 0 1548 108 36 0 chr4 158322041 158322263 -44006084 + MER30 DNA MER1_type 1 230 0 21 0 0 0 chr4 158323119 158323140 -44005207 + AT_rich Low_complexity Low_complexity 1 21 0 221 257 72 79 chr4 158324146 158324298 -44004049 + MER5A DNA MER1_type 20 170 -19 225 296 52 35 chr4 158324327 158324442 -44003905 + MIR SINE MIR 90 206 -56 205 243 114 29 chr4 158324938 158325008 -44003339 + MIR3 SINE MIR 101 176 -32 25 0 0 0 chr4 158325944 158325969 -44002378 + AT_rich Low_complexity Low_complexity 1 25 0 1248 194 40 0 chr4 158326877 158327099 -44001248 - AluJb SINE Alu -76 236 6 4288 129 35 3 chr4 158327104 158327793 -44000554 - L1MC2 LINE L1 -174 6170 5460 253 314 69 0 chr4 158328253 158328355 -43999992 + L2 LINE L2 2560 2668 -646 239 362 65 22 chr4 158328379 158328517 -43999830 - L2 LINE L2 -32 3240 3097 204 314 88 38 chr4 158328672 158328831 -43999516 + L2 LINE L2 2688 2854 -460 518 276 70 49 chr4 158330547 158330732 -43997615 - MIR SINE MIR -55 207 19 203 254 122 56 chr4 158331535 158331656 -43996691 - MIR3 SINE MIR -13 195 63 445 267 86 9 chr4 158332012 158332128 -43996219 + MIR SINE MIR 59 183 -79 343 304 12 75 chr4 158333029 158333190 -43995157 + MER5A DNA MER1_type 38 188 -1 492 253 136 7 chr4 158333236 158333390 -43994957 - MER5B DNA MER1_type -1 177 4 1178 253 52 0 chr4 158333977 158334321 -43994026 + L1ME3A LINE L1 5809 6170 0 440 314 126 28 chr4 158334336 158334996 -43993351 - L2 LINE L2 -36 3236 2458 182 321 0 0 chr4 158335215 158335271 -43993076 + MIR SINE MIR 94 149 -113 2359 93 0 0 chr4 158335790 158336092 -43992255 - AluY SINE Alu -9 302 1 382 270 12 55 chr4 158336638 158336801 -43991546 - L1M4c LINE L1 -5220 1164 1009 289 277 0 0 chr4 158337052 158337117 -43991230 - HAL1 LINE L1 -2165 342 278 275 243 194 68 chr4 158337431 158337653 -43990694 - MIR SINE MIR 0 262 13 362 226 7 20 chr4 158339602 158339748 -43988599 + (TATATG)n Simple_repeat Simple_repeat 3 146 0 24 53 0 0 chr4 158340105 158340143 -43988204 + AT_rich Low_complexity Low_complexity 1 38 0 448 194 71 174 chr4 158340756 158341171 -43987176 + L2 LINE L2 2319 3311 -2 419 295 30 48 chr4 158342119 158342285 -43986062 - MIR3 SINE MIR -7 201 39 570 224 70 96 chr4 158343703 158343975 -43984372 + L2 LINE L2 3049 3313 0 186 388 122 0 chr4 158344278 158344376 -43983971 + MIR SINE MIR 38 147 -61 386 145 35 14 chr4 158345064 158345209 -43983138 + (TA)n Simple_repeat Simple_repeat 1 148 0 282 250 7 14 chr4 158345231 158345375 -43982972 + (TA)n Simple_repeat Simple_repeat 2 144 0 23 62 0 0 chr4 158348149 158348181 -43980166 + AT_rich Low_complexity Low_complexity 1 32 0 225 148 197 16 chr4 158350224 158350285 -43978062 - Charlie8 DNA MER1_type 0 2417 2346 946 244 108 45 chr4 158350447 158350879 -43977468 - MLT1C LTR MaLR -1 625 1 * 2154 213 69 74 chr4 158350879 158351495 -43976852 - MLT1E1 LTR MaLR -41 613 1 1100 166 0 6 chr4 158352226 158352401 -43975946 + AluJb SINE Alu 129 302 -10 185 395 126 8 chr4 158354127 158354246 -43974101 - L2 LINE L2 -8 3264 3132 415 285 29 34 chr4 158354247 158354454 -43973893 + L2 LINE L2 2370 2575 -739 919 287 111 30 chr4 158354477 158354972 -43973375 - MLT1G LTR MaLR -24 566 32 375 317 91 55 chr4 158355027 158355705 -43972642 + L2 LINE L2 2607 3308 -5 235 366 32 41 chr4 158355917 158356163 -43972184 - L2 LINE L2 -405 2909 2666 1910 118 66 41 chr4 158356489 158356855 -43971492 - THE1C LTR MaLR 0 375 1 3309 112 48 48 chr4 158357007 158357605 -43970742 + MER4A LTR ERV1 3 600 0 334 372 30 37 chr4 158358643 158358807 -43969540 + L2 LINE L2 3107 3269 -3 2007 286 104 33 chr4 158359457 158360598 -43967749 - L2 LINE L2 0 3313 2096 247 303 75 44 chr4 158360598 158361027 -43967320 + L1MC4a LINE L1 4390 4831 -1315 21 0 0 0 chr4 158361091 158361112 -43967235 + AT_rich Low_complexity Low_complexity 1 21 0 1500 267 104 24 chr4 158361387 158362137 -43966210 + L1MC4a LINE L1 5258 6067 -1741 519 242 278 14 chr4 158362294 158362517 -43965830 - L2 LINE L2 -1478 1836 1555 999 271 45 57 chr4 158362526 158362872 -43965475 - L1ME3A LINE L1 -295 5875 5538 1851 170 3 6 chr4 158362872 158363184 -43965163 - AluJb SINE Alu -1 311 1 999 271 45 57 chr4 158363184 158363457 -43964890 - L1ME3A LINE L1 -632 5538 5263 801 320 13 0 chr4 158363474 158363702 -43964645 - MIR SINE MIR -1 261 31 502 293 107 70 chr4 158363753 158364730 -43963617 - L1ME3A LINE L1 -925 5221 4165 1599 162 3 73 chr4 158364730 158365058 -43963289 - AluJb SINE Alu -4 308 4 502 293 107 70 chr4 158365058 158365604 -43962743 - L1ME3A LINE L1 -1981 4165 3641 798 289 65 4 chr4 158365795 158366041 -43962306 - MIR SINE MIR 0 262 2 946 277 99 22 chr4 158366070 158366759 -43961588 - L1ME3A LINE L1 -2734 3412 2671 21 0 0 0 chr4 158366764 158366785 -43961562 + AT_rich Low_complexity Low_complexity 1 21 0 1804 183 0 0 chr4 158366804 158367094 -43961253 - AluJb SINE Alu -19 293 4 1338 181 225 22 chr4 158367102 158367437 -43960910 - L1ME LINE L1 -463 5701 5436 2339 79 7 10 chr4 158367437 158367740 -43960607 - AluSq SINE Alu -11 302 1 1338 181 225 22 chr4 158367740 158367998 -43960349 - L1ME LINE L1 -728 5436 4982 915 269 8 39 chr4 158368795 158369052 -43959295 - MIR SINE MIR -2 260 12 246 32 0 0 chr4 158369671 158369702 -43958645 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 284 203 17 0 chr4 158370456 158370515 -43957832 + U7 snRNA snRNA 1 60 -3 255 103 0 0 chr4 158370542 158370581 -43957766 + (A)n Simple_repeat Simple_repeat 1 39 0 381 221 57 21 chr4 158370829 158370969 -43957378 - L1ME4a LINE L1 0 6121 5977 21 36 0 0 chr4 158371054 158371082 -43957265 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 158371199 158371223 -43957124 + AT_rich Low_complexity Low_complexity 1 24 0 241 366 60 0 chr4 158372073 158372207 -43956140 - L1ME LINE L1 -462 5659 5518 2100 112 4 0 chr4 158373658 158373935 -43954412 + AluSg SINE Alu 2 279 -31 243 0 0 0 chr4 158373939 158373966 -43954381 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1956 122 71 42 chr4 158375160 158375514 -43952833 - THE1B LTR MaLR 0 364 1 10932 100 9 42 chr4 158375514 158375595 -43952752 - THE1B-int LTR MaLR 0 1580 1498 387 0 0 0 chr4 158375595 158375638 -43952709 + (TTA)n Simple_repeat Simple_repeat 3 45 0 3025 34 0 0 chr4 158375638 158375992 -43952355 - L1PA3 LINE L1 -18 6137 5784 10932 100 9 42 chr4 158375992 158377543 -43950804 - THE1B-int LTR MaLR -80 1500 1 1653 142 174 3 chr4 158377543 158377854 -43950493 - THE1B LTR MaLR 0 364 1 221 57 29 0 chr4 158378165 158378200 -43950147 + (CA)n Simple_repeat Simple_repeat 1 36 0 294 131 82 16 chr4 158379098 158379159 -43949188 - MIR3 SINE MIR 0 208 144 25 51 0 0 chr4 158382481 158382520 -43945827 + AT_rich Low_complexity Low_complexity 1 39 0 549 257 170 0 chr4 158383318 158383489 -43944858 + MIR SINE MIR 43 242 -20 710 242 0 0 chr4 158383557 158383706 -43944641 + MER45B DNA AcHobo 1 149 -891 7083 24 2 1 chr4 158383706 158384547 -43943800 - L1PA4 LINE L1 -1302 4844 4003 7595 29 2 0 chr4 158384547 158385857 -43942490 + L1PA4 LINE L1 4841 6155 0 4035 198 44 12 chr4 158385860 158386693 -43941654 + MER45B DNA AcHobo 138 997 -43 470 274 86 0 chr4 158387400 158387634 -43940713 + L1ME4a LINE L1 5677 5930 -191 1384 101 44 44 chr4 158387944 158387999 -43940348 + MER30 DNA MER1_type 4 58 -172 2171 114 0 13 chr4 158387999 158388297 -43940050 + AluSg SINE Alu 3 296 -14 1384 101 44 44 chr4 158388297 158388468 -43939879 + MER30 DNA MER1_type 57 230 0 188 298 83 0 chr4 158388617 158388701 -43939646 + L2 LINE L2 1676 1766 -1548 1506 288 218 7 chr4 158388749 158389883 -43938464 + L2 LINE L2 1945 3312 -1 1212 222 127 79 chr4 158391186 158391293 -43937054 + MLT1D LTR MaLR 1 101 -404 1900 173 0 0 chr4 158391293 158391599 -43936748 + AluJo SINE Alu 1 306 -6 1212 222 127 79 chr4 158391599 158391973 -43936374 + MLT1D LTR MaLR 101 505 0 311 337 124 6 chr4 158392140 158392318 -43936029 - MIR SINE MIR -62 200 2 359 257 97 63 chr4 158392817 158393117 -43935230 - L1MC5 LINE L1 -48 7913 7604 240 295 36 9 chr4 158393102 158393214 -43935133 - L1M4 LINE L1 -1534 4612 4498 * 1243 125 24 20 chr4 158393224 158393472 -43934875 - L1MDb LINE L1 -5197 1212 964 279 0 0 0 chr4 158393472 158393503 -43934844 + (TC)n Simple_repeat Simple_repeat 2 32 0 372 164 0 0 chr4 158393503 158393570 -43934777 + (TA)n Simple_repeat Simple_repeat 2 68 0 1649 173 3 37 chr4 158393570 158393865 -43934482 - AluJo SINE Alu -27 285 1 1919 261 65 12 chr4 158393869 158394374 -43933973 - L1MDb LINE L1 -5446 963 432 726 222 113 10 chr4 158394527 158394730 -43933617 - MER58A DNA MER1_type 0 224 1 247 261 116 46 chr4 158394887 158395535 -43932812 - L1M4 LINE L1 -2910 3236 2544 22 0 0 0 chr4 158395818 158395840 -43932507 + AT_rich Low_complexity Low_complexity 1 22 0 490 350 42 11 chr4 158396122 158396408 -43931939 - HAL1b LINE L1 -705 643 349 2196 179 29 47 chr4 158396940 158397454 -43930893 - MLT1D LTR MaLR 0 505 1 23 54 0 0 chr4 158398449 158398486 -43929861 + AT_rich Low_complexity Low_complexity 1 37 0 1977 117 0 7 chr4 158398522 158398796 -43929551 + AluSg SINE Alu 39 310 0 230 115 66 0 chr4 158399672 158399733 -43928614 + (TA)n Simple_repeat Simple_repeat 1 65 0 1186 230 135 75 chr4 158399842 158400360 -43927987 - MLT1H LTR MaLR 0 549 1 393 255 10 10 chr4 158401567 158401669 -43926678 - MLT1H-int LTR MaLR -1633 102 1 884 249 137 74 chr4 158401669 158402166 -43926181 - MLT1H LTR MaLR 0 549 1 225 189 144 11 chr4 158402983 158403073 -43925274 + L1ME4a LINE L1 5970 6071 -50 352 244 17 52 chr4 158404033 158404148 -43924199 - L1MC4 LINE L1 -1339 6703 6593 384 204 0 97 chr4 158404206 158404309 -43924038 + L2 LINE L2 3221 3313 0 247 340 20 65 chr4 158405376 158405529 -43922818 - MIR3 SINE MIR -33 175 30 430 261 78 9 chr4 158407099 158407214 -43921133 + L2 LINE L2 3150 3272 0 1269 216 84 49 chr4 158407271 158407721 -43920626 + MLT1C LTR MaLR 1 466 -1 1799 115 0 8 chr4 158408650 158408903 -43919444 + AluSq SINE Alu 61 311 -2 216 228 0 70 chr4 158409383 158409440 -43918907 + L2 LINE L2 3202 3254 -18 188 98 0 24 chr4 158409621 158409662 -43918685 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 452 340 213 30 chr4 158409838 158410161 -43918186 + L3 LINE CR1 613 876 -701 255 31 0 0 chr4 158410161 158410193 -43918154 + (CA)n Simple_repeat Simple_repeat 1 32 0 452 340 213 30 chr4 158410193 158410626 -43917721 + L3 LINE CR1 876 1507 -70 181 250 0 0 chr4 158410788 158410824 -43917523 + L2 LINE L2 3218 3253 -19 250 305 0 85 chr4 158413101 158413219 -43915128 + L2 LINE L2 3165 3272 0 25 0 0 0 chr4 158414897 158414922 -43913425 + AT_rich Low_complexity Low_complexity 1 25 0 182 216 59 20 chr4 158415126 158415177 -43913170 + L2 LINE L2 3007 3059 -213 588 292 106 22 chr4 158416260 158416486 -43911861 + MIR SINE MIR 9 253 -9 267 333 19 28 chr4 158416657 158416765 -43911582 - MIR SINE MIR -86 122 16 268 299 35 0 chr4 158418097 158418184 -43910163 + MIR SINE MIR 41 130 -78 207 294 18 64 chr4 158418665 158418774 -43909573 + MIR SINE MIR 159 262 0 401 274 133 0 chr4 158418918 158419031 -43909316 + MIR SINE MIR 78 205 -57 2383 103 0 3 chr4 158419182 158419493 -43908854 + AluSg SINE Alu 1 310 0 479 259 217 0 chr4 158419558 158419701 -43908646 + MER5A DNA MER1_type 15 188 -1 1637 94 8 21 chr4 158423141 158423375 -43904972 + AluSq SINE Alu 67 297 -16 1246 223 46 74 chr4 158423672 158424205 -43904142 + L1MC4a LINE L1 5200 5737 -747 1202 116 30 15 chr4 158424226 158424425 -43903922 + L1MA5A LINE L1 6083 6284 -13 348 231 39 69 chr4 158424476 158424679 -43903668 + L1MC4a LINE L1 5940 6136 -1672 3335 243 72 34 chr4 158424681 158425911 -43902436 + L1MC4a LINE L1 6181 7456 -352 351 169 12 12 chr4 158425912 158425995 -43902352 + L1MC4 LINE L1 7763 7845 -197 1136 171 179 52 chr4 158426006 158426374 -43901973 - MSTB LTR MaLR -13 415 1 289 196 84 140 chr4 158426396 158426575 -43901772 + L1MC4 LINE L1 7860 8028 -14 319 256 50 0 chr4 158427082 158427171 -43901176 + MIR SINE MIR 53 141 -67 328 115 0 7 chr4 158427602 158427656 -43900691 - Alu SINE Alu -253 46 3 1842 150 60 14 chr4 158427678 158428031 -43900316 - L1PB1 LINE L1 0 6867 6499 306 148 0 0 chr4 158428035 158428089 -43900258 + (TA)n Simple_repeat Simple_repeat 1 54 0 207 0 0 0 chr4 158428089 158428112 -43900235 + (CA)n Simple_repeat Simple_repeat 1 23 0 13497 181 26 13 chr4 158428112 158429505 -43898842 - L1PB1 LINE L1 -365 6502 5129 372 43 0 0 chr4 158429505 158429551 -43898796 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 13497 181 26 13 chr4 158429551 158433215 -43895132 - L1PB1 LINE L1 -1738 5129 1382 8695 109 7 5 chr4 158433216 158434482 -43893865 - HSMAR1 DNA Mariner -17 1270 2 202 275 58 14 chr4 158437033 158437102 -43891245 + MIR SINE MIR 143 214 -48 708 263 52 43 chr4 158438517 158438886 -43889461 + L1MC4a LINE L1 5566 5937 -1871 267 114 0 0 chr4 158438897 158438941 -43889406 + (TG)n Simple_repeat Simple_repeat 2 45 0 310 339 31 15 chr4 158439000 158439130 -43889217 + L1MC4a LINE L1 6044 6175 -1633 267 379 91 0 chr4 158439885 158440017 -43888330 + MIR3 SINE MIR 14 157 -51 324 0 0 0 chr4 158441174 158441210 -43887137 + (TG)n Simple_repeat Simple_repeat 1 36 0 576 265 67 29 chr4 158441535 158441817 -43886530 + L1ME LINE L1 5366 5682 -439 215 61 30 0 chr4 158441817 158441850 -43886497 + (TA)n Simple_repeat Simple_repeat 1 34 0 576 265 67 29 chr4 158441850 158441993 -43886354 + L1ME LINE L1 5682 5818 -303 * 669 127 63 63 chr4 158441975 158442180 -43886167 + L1MA8 LINE L1 6084 6288 -3 2168 143 0 16 chr4 158442845 158443209 -43885138 + MER47A DNA MER2_type 9 366 0 203 237 54 75 chr4 158443281 158443374 -43884973 - MIR SINE MIR -50 212 122 331 353 50 90 chr4 158444851 158445151 -43883196 - L2 LINE L2 0 3272 2985 287 315 42 28 chr4 158445242 158445385 -43882962 - L2 LINE L2 -299 2973 2829 377 231 118 80 chr4 158445485 158445697 -43882650 - L2 LINE L2 -17 3296 3077 5240 110 5 30 chr4 158446075 158446875 -43881472 - LTR17 LTR ERV1 0 780 1 556 280 164 0 chr4 158447119 158447326 -43881021 + MIR SINE MIR 8 248 -14 194 0 0 37 chr4 158449041 158449068 -43879279 + (GA)n Simple_repeat Simple_repeat 1 26 0 483 268 147 32 chr4 158450775 158450932 -43877415 + MER5A DNA MER1_type 9 183 -6 455 330 31 26 chr4 158451489 158451716 -43876631 - MIR SINE MIR -6 256 29 199 182 0 0 chr4 158452528 158452561 -43875786 - L2 LINE L2 -25 3247 3215 239 353 42 25 chr4 158452590 158452709 -43875638 - MIR SINE MIR -68 140 20 184 213 164 0 chr4 158453245 158453306 -43875041 - L2 LINE L2 -1887 1427 1357 2464 60 3 13 chr4 158453619 158453933 -43874414 - AluY SINE Alu 0 311 1 369 345 8 8 chr4 158454523 158454642 -43873705 - MIR3 SINE MIR -8 200 82 203 243 29 86 chr4 158454780 158454850 -43873497 - L3 LINE CR1 -96 1481 1416 602 13 13 0 chr4 158456866 158456941 -43871406 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 781 236 17 108 chr4 158457201 158457545 -43870802 - MLT1A1 LTR MaLR 0 365 53 * 1126 243 51 63 chr4 158457537 158458238 -43870109 + MER61E LTR ERV1 5 779 0 307 105 193 0 chr4 158458238 158458290 -43870057 - MSTC LTR MaLR -361 67 5 444 223 45 57 chr4 158458796 158458953 -43869394 - LTR41 LTR ERVL -618 155 1 726 194 16 0 chr4 158459391 158459520 -43868827 - FLAM_A SINE Alu -2 131 1 264 86 0 0 chr4 158460240 158460275 -43868072 + LTR32 LTR ERVL 15 49 -422 1228 169 16 29 chr4 158460275 158460518 -43867829 + LTR32 LTR ERVL 232 471 0 353 252 237 8 chr4 158460675 158460806 -43867541 - MER5A DNA MER1_type -25 164 4 1151 160 42 9 chr4 158460819 158461031 -43867316 + MER20 DNA MER1_type 1 219 0 2599 116 6 3 chr4 158462693 158463056 -43865291 + THE1B LTR MaLR 1 364 0 10709 112 9 32 chr4 158463056 158464674 -43863673 + THE1B-int LTR MaLR 1 1580 0 2178 139 13 40 chr4 158464674 158465048 -43863299 + THE1B LTR MaLR 1 364 0 1030 169 18 32 chr4 158465050 158465269 -43863078 - Tigger1 DNA MER2_type -1 2417 2202 590 185 41 7 chr4 158465265 158465411 -43862936 - Tigger1 DNA MER2_type -2267 151 1 * 339 270 126 25 chr4 158465636 158465795 -43862552 + MIR SINE MIR 40 214 -48 572 234 152 0 chr4 158465920 158466065 -43862282 - MIR SINE MIR -19 243 77 189 407 0 0 chr4 158466109 158466168 -43862179 - L2 LINE L2 -12 3260 3202 439 199 28 122 chr4 158466305 158466486 -43861861 - MER112 DNA MER1_type -96 164 1 225 108 0 0 chr4 158467526 158467563 -43860784 + (CAT)n Simple_repeat Simple_repeat 1 37 0 1697 148 61 66 chr4 158467853 158468230 -43860117 + THE1C LTR MaLR 1 375 0 602 176 130 0 chr4 158468235 158468343 -43860004 + AluJb SINE Alu 3 124 -188 236 278 0 22 chr4 158469257 158469347 -43859000 + GA-rich Low_complexity Low_complexity 1 88 0 377 176 14 0 chr4 158469421 158469495 -43858852 + MLT1K LTR MaLR 510 584 -4 615 314 165 56 chr4 158469579 158470166 -43858181 - L3 LINE CR1 -131 1446 796 772 62 42 97 chr4 158470198 158470293 -43858054 + L1MB3 LINE L1 6047 6133 -50 2161 124 0 0 chr4 158470293 158470584 -43857763 + AluY SINE Alu 7 297 -14 772 62 42 97 chr4 158470584 158470632 -43857715 + L1MB3 LINE L1 6133 6182 -1 339 240 146 45 chr4 158470638 158470925 -43857422 + L1MC5 LINE L1 7609 7924 -37 639 349 62 12 chr4 158470937 158471275 -43857072 - L3 LINE CR1 -789 788 434 324 333 31 16 chr4 158471327 158471456 -43856891 + MIR SINE MIR 29 159 -103 2151 191 24 9 chr4 158473458 158473878 -43854469 + MSTB LTR MaLR 1 426 0 2105 128 13 0 chr4 158473984 158474290 -43854057 + AluSx SINE Alu 1 310 -2 804 319 81 38 chr4 158474305 158474845 -43853502 + L2 LINE L2 2746 3309 -4 24 32 0 0 chr4 158476205 158476236 -43852111 + AT_rich Low_complexity Low_complexity 1 31 0 353 314 42 0 chr4 158476632 158476750 -43851597 + L2 LINE L2 3150 3272 0 22 0 0 0 chr4 158477143 158477165 -43851182 + AT_rich Low_complexity Low_complexity 1 22 0 296 196 0 0 chr4 158478440 158478496 -43849851 - MIR SINE MIR -117 145 90 23 78 0 0 chr4 158478681 158478732 -43849615 + AT_rich Low_complexity Low_complexity 1 51 0 366 123 0 0 chr4 158479218 158479275 -43849072 + (CA)n Simple_repeat Simple_repeat 2 58 0 2068 113 60 9 chr4 158480610 158480946 -43847401 + THE1A LTR MaLR 1 353 -2 11708 85 13 3 chr4 158480948 158482512 -43845835 + THE1A-int LTR MaLR 1 1580 0 2234 112 20 22 chr4 158482512 158482868 -43845479 + THE1A LTR MaLR 1 355 0 22 0 0 0 chr4 158482887 158482909 -43845438 + AT_rich Low_complexity Low_complexity 1 22 0 306 331 39 4 chr4 158482915 158483076 -43845271 - L1 LINE L1 -2283 3863 3700 237 294 10 10 chr4 158483221 158483323 -43845024 - MER103 DNA DNA -52 114 13 21 36 0 0 chr4 158483725 158483753 -43844594 + AT_rich Low_complexity Low_complexity 1 28 0 400 319 78 42 chr4 158483810 158484193 -43844154 - L1 LINE L1 -2962 3184 2788 1020 237 25 8 chr4 158484654 158484890 -43843457 + Charlie1 DNA MER1_type 5 244 -2517 3215 200 64 38 chr4 158484892 158485977 -43842370 + L1ME1 LINE L1 5028 6141 -25 695 146 23 8 chr4 158486002 158486132 -43842215 + Charlie1 DNA MER1_type 2626 2757 -4 24 53 0 0 chr4 158486149 158486187 -43842160 + AT_rich Low_complexity Low_complexity 1 38 0 2118 96 58 0 chr4 158486304 158486595 -43841752 - AluSp SINE Alu -5 308 1 843 110 0 22 chr4 158486915 158487051 -43841296 + FLAM_C SINE Alu 1 133 0 406 298 85 33 chr4 158487409 158487681 -43840666 + LTR33 LTR ERVL 233 518 -3 198 0 0 0 chr4 158487785 158487807 -43840540 + (T)n Simple_repeat Simple_repeat 1 22 0 726 191 0 23 chr4 158488298 158488429 -43839918 - FLAM_A SINE Alu -3 130 3 1604 216 52 13 chr4 158489406 158489864 -43838483 - MER69 DNA AcHobo -9 2517 2042 2837 155 18 37 chr4 158489880 158489919 -43838428 - L1MB2 LINE L1 -3 6168 6130 2271 107 0 0 chr4 158489919 158490217 -43838130 - AluSx SINE Alu -12 300 3 2837 155 18 37 chr4 158490217 158490739 -43837608 - L1MB2 LINE L1 -41 6130 5618 871 263 67 51 chr4 158490770 158491086 -43837261 - MER69 DNA AcHobo -1959 567 247 435 354 56 5 chr4 158492112 158492307 -43836040 + MIR SINE MIR 20 224 -38 1884 183 86 32 chr4 158493033 158493476 -43834871 + MLT1C LTR MaLR 1 467 0 2383 55 0 0 chr4 158494223 158494516 -43833831 + AluY SINE Alu 1 293 -18 297 280 38 86 chr4 158494673 158494859 -43833488 - MIR SINE MIR -54 208 32 215 186 17 85 chr4 158496953 158497012 -43831335 - L3 LINE CR1 -7 1570 1516 2137 121 3 0 chr4 158497552 158497841 -43830506 + AluSx SINE Alu 3 292 -20 246 62 0 0 chr4 158497841 158497873 -43830474 + (TA)n Simple_repeat Simple_repeat 2 33 0 656 200 17 0 chr4 158497873 158497993 -43830354 - FLAM_C SINE Alu -21 122 1 721 254 127 0 chr4 158498005 158498186 -43830161 - MIR SINE MIR -15 247 44 2699 26 0 7 chr4 158498818 158499127 -43829220 - AluY SINE Alu -4 307 1 657 271 197 35 chr4 158499403 158499779 -43828568 - L3b LINE CR1 -45 1538 1102 1562 168 3 52 chr4 158501167 158501477 -43826870 + AluJb SINE Alu 3 297 -15 1132 261 98 45 chr4 158502318 158502455 -43825892 + Charlie7 DNA MER1_type 1 129 -2483 1647 124 27 0 chr4 158502455 158502714 -43825633 - L1MA4A LINE L1 -10 6293 6028 1132 261 98 45 chr4 158502714 158503109 -43825238 + Charlie7 DNA MER1_type 129 561 -2051 570 221 99 19 chr4 158503113 158503376 -43824971 + Charlie7 DNA MER1_type 2328 2611 -1 255 311 61 38 chr4 158503473 158503605 -43824742 + L2 LINE L2 3138 3272 0 1945 216 72 26 chr4 158505110 158505690 -43822657 + L1ME2 LINE L1 5557 6163 -1 1344 188 11 72 chr4 158505685 158505752 -43822595 + L1MC4a LINE L1 6346 6416 -1392 * 2287 103 47 36 chr4 158505752 158506112 -43822235 + THE1B LTR MaLR 1 364 0 1344 188 11 72 chr4 158506112 158506406 -43821941 + L1MC4a LINE L1 6416 6685 -1123 1368 143 10 0 chr4 158506500 158506703 -43821644 + AluJb SINE Alu 18 222 -90 682 190 9 0 chr4 158506703 158506819 -43821528 - MER72 LTR ERV1 -605 117 1 754 303 43 20 chr4 158506911 158507261 -43821086 + L1MCc LINE L1 81 438 -5985 593 277 175 6 chr4 158507741 158508283 -43820064 + L1MCc LINE L1 1135 1940 -4887 2130 223 48 47 chr4 158508334 158509019 -43819328 + L1MC4 LINE L1 7357 8042 0 240 333 31 0 chr4 158509195 158509291 -43819056 - MIR3 SINE MIR -7 201 103 1603 196 0 33 chr4 158510505 158510806 -43817541 + AluJo SINE Alu 1 291 -21 182 158 53 0 chr4 158511033 158511071 -43817276 + L2 LINE L2 3272 3311 -2 321 26 0 0 chr4 158511201 158511239 -43817108 + (CA)n Simple_repeat Simple_repeat 2 39 0 429 255 38 9 chr4 158511247 158511386 -43816961 + MIR SINE MIR 19 163 -45 718 314 32 12 chr4 158511960 158512208 -43816139 + MIR SINE MIR 10 262 0 233 57 29 0 chr4 158513016 158513051 -43815296 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 36 0 0 0 chr4 158514517 158514553 -43813794 + AT_rich Low_complexity Low_complexity 1 36 0 2409 58 0 0 chr4 158514553 158514845 -43813502 - AluY SINE Alu -19 292 1 291 54 0 0 chr4 158515068 158515105 -43813242 + (CA)n Simple_repeat Simple_repeat 2 38 0 252 245 0 0 chr4 158517567 158517620 -43810727 + (CA)n Simple_repeat Simple_repeat 2 54 0 326 237 138 24 chr4 158518246 158518400 -43809947 + MLT1H LTR MaLR 373 542 -13 188 269 15 30 chr4 158518435 158518502 -43809845 - MIR SINE MIR -31 231 166 193 182 36 0 chr4 158518971 158519026 -43809321 + GA-rich Low_complexity Low_complexity 3 59 0 21 0 0 0 chr4 158521203 158521224 -43807123 + AT_rich Low_complexity Low_complexity 1 21 0 472 301 42 48 chr4 158521426 158521592 -43806755 + MIR SINE MIR 7 171 -91 1825 163 3 13 chr4 158521592 158521899 -43806448 - AluJb SINE Alu -8 304 1 3045 155 30 9 chr4 158521916 158522630 -43805717 + LTR39 LTR ERV1 2 783 0 570 215 15 8 chr4 158522922 158523052 -43805295 + MER94 DNA DNA 4 134 0 368 303 42 28 chr4 158523220 158523362 -43804985 + MIR SINE MIR 20 163 -99 415 298 70 6 chr4 158523811 158523969 -43804378 + MER5B DNA MER1_type 4 171 -7 4755 51 7 2 chr4 158523970 158524558 -43803789 - LTR10C LTR ERV1 0 591 1 243 274 269 4 chr4 158525056 158525242 -43803105 - MIR3 SINE MIR -28 180 3 1613 246 194 45 chr4 158527345 158527616 -43800731 - L2 LINE L2 -667 2647 2418 1299 168 152 4 chr4 158527616 158527872 -43800475 - AluJo SINE Alu -18 294 1 1613 246 194 45 chr4 158527872 158528420 -43799927 - L2 LINE L2 -896 2418 1706 614 199 159 30 chr4 158530040 158530241 -43798106 + L1ME3A LINE L1 5944 6170 0 2130 126 10 0 chr4 158530287 158530589 -43797758 - AluSg SINE Alu -5 305 1 1620 182 60 29 chr4 158530670 158531055 -43797292 - MLT2C1 LTR ERVL 0 397 1 204 97 0 0 chr4 158531585 158531616 -43796731 + (TCC)n Simple_repeat Simple_repeat 2 32 0 907 257 28 16 chr4 158531815 158532068 -43796279 - MIR SINE MIR 0 262 7 329 344 120 26 chr4 158533702 158534277 -43794070 + L2 LINE L2 2347 2975 -339 1149 149 0 29 chr4 158534584 158534792 -43793555 - L1PA16 LINE L1 0 6166 5965 1850 175 0 0 chr4 158535074 158535371 -43792976 + AluSx SINE Alu 1 297 -15 227 244 56 22 chr4 158536925 158537015 -43791332 + L1 LINE L1 4885 4977 -1169 440 291 81 31 chr4 158537370 158537631 -43790716 + L1ME4a LINE L1 5398 5671 -450 1222 184 18 53 chr4 158537741 158537900 -43790447 + MLT1A1 LTR MaLR 1 147 -218 1713 153 0 80 chr4 158537900 158538227 -43790120 + AluJo SINE Alu 7 307 -5 1222 184 18 53 chr4 158538227 158538349 -43789998 + MLT1A1 LTR MaLR 147 272 -93 14295 140 30 28 chr4 158538919 158541331 -43787016 + Tigger1 DNA MER2_type 1 2418 0 365 316 51 10 chr4 158541787 158541983 -43786364 + HERVL LTR ERVL 2957 3160 -2494 256 316 53 23 chr4 158542150 158542283 -43786064 + HERVL LTR ERVL 3414 3550 -2214 1109 302 18 33 chr4 158542460 158542950 -43785397 + HERVL LTR ERVL 4896 5378 -386 519 286 75 110 chr4 158543286 158543859 -43784488 + LTR67 LTR ERVL 5 557 0 374 321 46 20 chr4 158543866 158544062 -43784285 + L1ME4a LINE L1 5695 5895 -226 1029 244 91 38 chr4 158544133 158544632 -43783715 - MLT1F1 LTR MaLR 0 567 1 26 50 0 0 chr4 158545405 158545445 -43782902 + AT_rich Low_complexity Low_complexity 1 40 0 206 286 0 0 chr4 158545625 158545702 -43782645 + (TA)n Simple_repeat Simple_repeat 2 78 0 355 268 80 7 chr4 158545707 158545845 -43782502 + L1ME4a LINE L1 5964 6111 -10 290 244 35 51 chr4 158545883 158546080 -43782267 + L1ME4a LINE L1 5769 5962 -159 4830 134 68 23 chr4 158547137 158548001 -43780346 + MER4D LTR ERV1 1 903 0 306 268 71 54 chr4 158548329 158548497 -43779850 + L1ME4a LINE L1 5938 6108 -13 437 292 58 8 chr4 158548559 158548679 -43779668 + L2 LINE L2 3147 3272 0 587 217 9 9 chr4 158549384 158549499 -43778848 - LTR69 LTR ERVL 0 588 474 489 139 0 13 chr4 158549502 158549581 -43778766 - AluSg/x SINE Alu -14 296 219 2537 145 91 27 chr4 158549581 158550030 -43778317 - LTR69 LTR ERVL -110 478 1 1784 136 37 4 chr4 158550174 158550447 -43777900 + AluJb SINE Alu 23 304 -8 4989 139 22 41 chr4 158551179 158552100 -43776247 + MER4D LTR ERV1 1 903 0 2538 59 3 0 chr4 158552101 158552406 -43775941 - AluY SINE Alu -5 306 1 21 0 0 0 chr4 158552609 158552630 -43775717 + AT_rich Low_complexity Low_complexity 1 21 0 393 296 127 32 chr4 158553023 158553157 -43775190 - L1MC4a LINE L1 -1878 5930 5810 1247 229 34 27 chr4 158553157 158553450 -43774897 + AluJo SINE Alu 2 296 -16 393 296 127 32 chr4 158553450 158553535 -43774812 - L1MC4a LINE L1 -1998 5810 5690 699 248 88 76 chr4 158553558 158554006 -43774341 - LTR38 LTR ERV1 -20 590 88 236 196 69 0 chr4 158554692 158554794 -43773553 + (TA)n Simple_repeat Simple_repeat 1 109 0 1984 110 0 92 chr4 158554810 158555145 -43773202 + AluSx SINE Alu 1 304 -8 403 380 91 11 chr4 158555190 158555453 -43772894 - L1M4 LINE L1 -1971 4175 3892 1556 170 8 19 chr4 158555549 158555814 -43772533 + AluJo SINE Alu 13 274 -38 533 202 0 0 chr4 158555868 158555952 -43772395 - AluJ/FLAM SINE Alu -228 84 1 1936 147 131 11 chr4 158555967 158556349 -43771998 - MSTA LTR MaLR 0 428 1 387 261 62 28 chr4 158556352 158556563 -43771784 - L1M4 LINE L1 -2309 3837 3620 1263 262 64 52 chr4 158557220 158557717 -43770630 - MLT1J LTR MaLR -7 504 2 695 290 84 78 chr4 158558490 158559180 -43769167 + L1MEd LINE L1 337 1030 -5089 852 292 47 34 chr4 158559682 158560291 -43768056 + L1MEd LINE L1 1072 1731 -4579 6315 40 14 1 chr4 158560737 158561517 -43766830 + L1PA5 LINE L1 5358 6147 -7 2541 270 31 47 chr4 158561550 158562258 -43766089 - L1MC4a LINE L1 -751 5395 4699 542 171 0 0 chr4 158563145 158563233 -43765114 - AluSg/x SINE Alu -12 300 213 429 103 0 103 chr4 158563233 158563320 -43765027 - L1MC2 LINE L1 -109 6235 6158 1952 155 0 0 chr4 158563320 158563610 -43764737 - AluJb SINE Alu -22 290 1 390 338 40 31 chr4 158563948 158564176 -43764171 - MIR SINE MIR -16 246 17 206 247 99 49 chr4 158564605 158564686 -43763661 + L2 LINE L2 3229 3313 0 976 262 148 29 chr4 158564918 158565397 -43762950 - MLT1H1 LTR MaLR -11 531 1 328 263 88 9 chr4 158565895 158566009 -43762338 - MIR SINE MIR -54 208 86 227 200 0 17 chr4 158566118 158566126 -43762221 + (TATATG)n Simple_repeat Simple_repeat 2 9 -51 1800 177 8 24 chr4 158566126 158566498 -43761849 + MER47A DNA MER2_type 1 366 0 227 200 0 17 chr4 158566498 158566549 -43761798 + (TATATG)n Simple_repeat Simple_repeat 9 60 0 183 193 0 88 chr4 158567680 158567737 -43760610 + L2 LINE L2 3262 3313 0 195 42 0 0 chr4 158568486 158568510 -43759837 + (CATAG)n Simple_repeat Simple_repeat 2 25 0 22 35 0 0 chr4 158570278 158570307 -43758040 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr4 158571021 158571056 -43757291 + AT_rich Low_complexity Low_complexity 1 35 0 303 93 0 0 chr4 158571249 158571292 -43757055 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 1574 191 6 38 chr4 158571292 158571607 -43756740 - AluJo SINE Alu -7 305 1 181 57 57 0 chr4 158572080 158572115 -43756232 + (TA)n Simple_repeat Simple_repeat 2 38 0 230 159 32 0 chr4 158572504 158572567 -43755780 + CT-rich Low_complexity Low_complexity 4 68 0 211 288 113 62 chr4 158572570 158572730 -43755617 - L2 LINE L2 0 3313 3146 854 263 9 9 chr4 158572771 158572995 -43755352 - MLT1A1 LTR MaLR 0 365 142 28 0 0 0 chr4 158572995 158573023 -43755324 + AT_rich Low_complexity Low_complexity 1 28 0 18659 58 4 2 chr4 158573023 158576220 -43752127 - L1PA5 LINE L1 -8 6146 2945 1648 48 0 0 chr4 158576220 158576428 -43751919 + L1PA5 LINE L1 2759 2966 -3180 919 154 0 12 chr4 158576428 158576590 -43751757 - MLT1A1 LTR MaLR -205 160 1 23 54 0 0 chr4 158577334 158577371 -43750976 + AT_rich Low_complexity Low_complexity 1 37 0 496 215 146 14 chr4 158580852 158580996 -43747351 + MIR SINE MIR 24 186 -76 912 266 28 24 chr4 158581028 158581280 -43747067 + MIR SINE MIR 2 254 -8 275 83 0 0 chr4 158581622 158581658 -43746689 - U2 snRNA snRNA -152 36 1 192 244 122 49 chr4 158582548 158582671 -43745676 - MIR SINE MIR -66 196 65 315 253 95 68 chr4 158582991 158583181 -43745166 + L2 LINE L2 3119 3313 0 215 200 0 15 chr4 158584325 158584390 -43743957 + CT-rich Low_complexity Low_complexity 1 64 0 709 166 23 17 chr4 158584409 158584584 -43743763 + CT-rich Low_complexity Low_complexity 2 177 0 1691 176 0 20 chr4 158584697 158584993 -43743354 - AluSx SINE Alu -20 292 3 3535 103 8 6 chr4 158585411 158585917 -43742430 + MER9 LTR ERVK 5 511 0 357 315 89 0 chr4 158586825 158586971 -43741376 + MIR SINE MIR 90 248 -14 842 212 0 0 chr4 158587157 158587303 -43741044 + FRAM SINE Alu 1 146 -30 230 306 35 12 chr4 158587752 158587837 -43740510 - MIR3 SINE MIR -9 199 113 298 287 119 20 chr4 158590443 158590544 -43737803 + L2 LINE L2 3160 3270 -2 308 264 0 66 chr4 158593737 158593858 -43734489 - L1MC4 LINE L1 -1341 6701 6589 232 176 25 17 chr4 158593901 158594020 -43734327 + (TA)n Simple_repeat Simple_repeat 1 120 0 188 262 0 0 chr4 158594308 158594350 -43733997 - L2 LINE L2 -9 3304 3263 222 277 0 84 chr4 158594389 158594472 -43733875 + MIR SINE MIR 20 95 -167 363 273 11 0 chr4 158594556 158594644 -43733703 - L2 LINE L2 0 3313 3225 213 39 0 0 chr4 158594997 158595023 -43733324 + (GA)n Simple_repeat Simple_repeat 1 26 0 2554 176 45 16 chr4 158595190 158595715 -43732632 - L1MC2 LINE L1 -19 7752 6126 346 325 68 88 chr4 158595845 158596140 -43732207 - L2 LINE L2 -5 3267 2979 345 82 0 0 chr4 158596460 158596509 -43731838 + (CA)n Simple_repeat Simple_repeat 2 50 0 202 347 54 50 chr4 158597147 158597369 -43730978 + L2 LINE L2 2741 2963 -351 741 249 107 10 chr4 158597613 158597856 -43730491 - MLT1L LTR MaLR -170 445 116 571 297 73 37 chr4 158599411 158599657 -43728690 + MIR SINE MIR 1 255 -7 379 225 0 45 chr4 158600442 158600531 -43727816 + MARNA DNA Mariner 272 356 -230 285 226 236 19 chr4 158600561 158600667 -43727680 + MIR3 SINE MIR 33 161 -47 216 328 143 8 chr4 158602364 158602623 -43725724 + L3 LINE CR1 1233 1526 -51 288 0 0 0 chr4 158604682 158604714 -43723633 + (CA)n Simple_repeat Simple_repeat 1 32 0 741 321 42 0 chr4 158605650 158605890 -43722457 + MIR SINE MIR 13 262 0 1199 162 17 55 chr4 158606335 158606644 -43721703 + AluJb SINE Alu 87 386 0 236 189 14 14 chr4 158606570 158606817 -43721530 + GA-rich Low_complexity Low_complexity 4 250 0 * 956 161 0 35 chr4 158607645 158607819 -43720528 + FRAM SINE Alu 1 165 -11 1476 164 99 4 chr4 158608181 158608444 -43719903 + AluJo SINE Alu 1 288 -24 441 0 0 0 chr4 158608445 158608494 -43719853 + (TG)n Simple_repeat Simple_repeat 2 50 0 375 262 193 7 chr4 158608543 158608688 -43719659 + MER5A DNA MER1_type 18 189 0 22 56 0 0 chr4 158608766 158608802 -43719545 + AT_rich Low_complexity Low_complexity 1 36 0 959 266 108 48 chr4 158609159 158609797 -43718550 - L2 LINE L2 -1 3312 2639 279 253 182 19 chr4 158609909 158610063 -43718284 - MIR3 SINE MIR 0 208 30 276 276 134 8 chr4 158610129 158610263 -43718084 + MIR SINE MIR 98 248 -14 439 317 54 18 chr4 158610572 158610796 -43717551 - MIR SINE MIR 0 262 31 443 280 115 46 chr4 158610830 158611028 -43717319 - MIR SINE MIR -2 260 44 2075 127 35 69 chr4 158611028 158611405 -43716942 + THE1B LTR MaLR 1 364 0 443 280 115 46 chr4 158611405 158611424 -43716923 - MIR SINE MIR -218 44 28 1064 233 5 0 chr4 158612187 158612410 -43715937 + MER58A DNA MER1_type 1 224 0 4015 96 149 28 chr4 158612741 158613779 -43714568 + Tigger3b DNA MER2_type 1 1232 0 252 130 0 0 chr4 158619314 158619360 -43708987 + (CA)n Simple_repeat Simple_repeat 1 46 0 1115 154 0 0 chr4 158619385 158619547 -43708800 - AluSg/x SINE Alu -23 287 126 2172 114 0 7 chr4 158619549 158619847 -43708500 - AluY SINE Alu -15 296 1 258 350 107 11 chr4 158620136 158620357 -43707990 + MIR SINE MIR 5 252 -10 497 270 101 34 chr4 158620972 158621239 -43707108 - LTR16A LTR ERVL -17 433 149 1279 302 70 12 chr4 158621335 158622245 -43706102 - HERV16 LTR ERVL -2754 2242 1138 14077 27 2 0 chr4 158623313 158625083 -43703264 - L1PA2 LINE L1 -1544 4602 2829 7244 24 0 0 chr4 158625081 158626610 -43701737 + L1PA2 LINE L1 4598 6126 -29 * 279 104 0 0 chr4 158626610 158626658 -43701689 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 6064 118 20 17 chr4 158626668 158626844 -43701503 + Tigger2 DNA MER2_type 82 256 -2462 1334 167 51 103 chr4 158626844 158627156 -43701191 + AluJb SINE Alu 1 296 -16 6064 118 20 17 chr4 158627156 158627972 -43700375 + Tigger2 DNA MER2_type 256 1077 -1641 7950 90 3 1 chr4 158627972 158629140 -43699207 - L1PA7 LINE L1 -1837 4309 3140 6975 90 3 3 chr4 158629140 158630932 -43697415 + L1PA7 LINE L1 4336 6151 -3 9032 128 65 15 chr4 158630932 158631959 -43696388 + Tigger2 DNA MER2_type 1067 2203 -515 2283 129 19 19 chr4 158631959 158632323 -43696024 + THE1B LTR MaLR 1 364 0 9032 128 65 15 chr4 158632323 158632867 -43695480 + Tigger2 DNA MER2_type 2203 2718 0 198 103 0 0 chr4 158633660 158633689 -43694658 + (T)n Simple_repeat Simple_repeat 1 29 0 349 308 188 34 chr4 158634097 158634422 -43693925 + L2 LINE L2 2584 2958 -356 260 254 0 0 chr4 158634647 158634702 -43693645 + L2 LINE L2 3259 3313 0 1758 166 26 91 chr4 158634908 158635505 -43692842 + L1MD2 LINE L1 5153 5709 -650 2222 114 31 11 chr4 158635512 158635872 -43692475 + THE1C LTR MaLR 9 375 0 2763 195 39 13 chr4 158635872 158636482 -43691865 + L1MD2 LINE L1 5704 6329 -30 182 241 138 0 chr4 158636616 158636674 -43691673 + L2 LINE L2 3201 3266 -6 1011 65 10 38 chr4 158636677 158636965 -43691382 + (GAAA)n Simple_repeat Simple_repeat 1 281 0 379 313 55 18 chr4 158637412 158637575 -43690772 + MIR SINE MIR 23 191 -71 213 213 66 0 chr4 158637629 158637690 -43690657 + GA-rich Low_complexity Low_complexity 5 69 0 312 27 0 0 chr4 158639810 158639847 -43688500 + (CA)n Simple_repeat Simple_repeat 2 38 0 217 281 56 22 chr4 158640438 158640527 -43687820 + MIR SINE MIR 171 262 0 2249 101 0 0 chr4 158640666 158640964 -43687383 + AluSc SINE Alu 1 298 -11 2416 74 0 19 chr4 158641595 158641907 -43686440 - AluY SINE Alu -5 306 1 1609 175 3 53 chr4 158642337 158642657 -43685690 - AluJb SINE Alu -8 304 1 27 29 0 0 chr4 158644682 158644716 -43683631 + AT_rich Low_complexity Low_complexity 1 34 0 180 214 89 36 chr4 158644893 158644949 -43683398 + L2 LINE L2 3255 3313 0 756 208 0 0 chr4 158644987 158645117 -43683230 - FLAM_A SINE Alu -3 130 1 7268 21 2 1 chr4 158646466 158647336 -43681011 + L1PA3 LINE L1 5301 6171 0 324 189 0 0 chr4 158647963 158648037 -43680310 + (CA)n Simple_repeat Simple_repeat 2 75 0 231 234 0 0 chr4 158648087 158648134 -43680213 - L2 LINE L2 -38 3275 3229 470 286 111 32 chr4 158648630 158648847 -43679500 + MIR SINE MIR 29 262 0 22 0 0 0 chr4 158649781 158649803 -43678544 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 158650447 158650468 -43677879 + AT_rich Low_complexity Low_complexity 1 21 0 4546 130 91 4 chr4 158651032 158651792 -43676555 + LTR1B LTR ERV1 1 826 0 1817 155 7 0 chr4 158652143 158652433 -43675914 - AluJo SINE Alu -20 292 1 2377 73 33 0 chr4 158654352 158654653 -43673694 + AluY SINE Alu 1 311 0 280 291 146 10 chr4 158654776 158654879 -43673468 - L2 LINE L2 -15 3298 3182 553 359 39 22 chr4 158655182 158655434 -43672913 - MIR SINE MIR -6 256 3 305 304 52 44 chr4 158655527 158655662 -43672685 - MIR3 SINE MIR -70 138 3 * 306 296 107 71 chr4 158655662 158655708 -43672639 + L3 LINE CR1 1401 1444 -133 2545 69 0 0 chr4 158655708 158656012 -43672335 - AluSg SINE Alu -6 304 1 306 296 107 71 chr4 158656012 158656129 -43672218 + L3 LINE CR1 1444 1570 -7 824 175 19 81 chr4 158656187 158656398 -43671949 + AluJo SINE Alu 87 284 -28 198 171 0 0 chr4 158656625 158656666 -43671681 + CT-rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr4 158656976 158657004 -43671343 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr4 158657021 158657052 -43671295 + AT_rich Low_complexity Low_complexity 1 31 0 421 287 114 21 chr4 158657441 158657678 -43670669 - L1MC4a LINE L1 -1884 5924 5666 659 294 151 0 chr4 158658374 158658592 -43669755 - MIR SINE MIR -11 251 1 238 325 0 12 chr4 158659958 158660038 -43668309 + MLT1L LTR MaLR 156 234 -381 434 189 112 56 chr4 158660046 158660189 -43668158 - L2 LINE L2 -2 3311 3161 21 57 0 0 chr4 158660208 158660243 -43668104 + AT_rich Low_complexity Low_complexity 1 35 0 596 158 0 24 chr4 158661247 158661374 -43666973 + L1PA15 LINE L1 6041 6164 -1 429 214 62 18 chr4 158661432 158661544 -43666803 + MIR SINE MIR 71 187 -75 267 173 0 0 chr4 158661651 158661703 -43666644 + (TGGA)n Simple_repeat Simple_repeat 1 52 0 231 266 183 34 chr4 158661707 158661848 -43666499 - MIR3 SINE MIR -55 153 1 40 0 0 0 chr4 158662035 158662075 -43666272 + GC_rich Low_complexity Low_complexity 1 40 0 2583 102 14 11 chr4 158712489 158712850 -43615497 - THE1B LTR MaLR 0 364 3 401 218 10 20 chr4 158712850 158712951 -43615396 + MER5B DNA MER1_type 79 178 0 226 114 0 0 chr4 158713051 158713086 -43615261 + MIR SINE MIR 124 158 -104 2115 123 3 0 chr4 158713266 158713567 -43614780 + AluSx SINE Alu 1 302 -10 1795 186 0 7 chr4 158713688 158713995 -43614352 - AluJb SINE Alu -4 308 4 22 0 0 0 chr4 158714007 158714029 -43614318 + AT_rich Low_complexity Low_complexity 1 22 0 782 185 13 7 chr4 158714035 158714186 -43614161 + MER33 DNA MER1_type 1 152 -172 916 251 0 10 chr4 158714186 158714393 -43613954 + AluJo SINE Alu 87 291 -21 541 164 47 8 chr4 158714393 158714521 -43613826 + MER33 DNA MER1_type 167 299 -25 7657 79 14 6 chr4 158714626 158715841 -43612506 + L1P3 LINE L1 4276 5504 -650 2859 183 48 3 chr4 158716569 158717136 -43611211 - L1MD3 LINE L1 0 7995 7404 241 281 0 0 chr4 158717137 158717194 -43611153 - MLT1F1 LTR MaLR -443 124 68 366 243 116 29 chr4 158717218 158717391 -43610956 - L1MC3 LINE L1 -668 7117 6930 32 26 0 0 chr4 158718139 158718178 -43610169 + AT_rich Low_complexity Low_complexity 1 39 0 685 133 0 0 chr4 158718391 158718496 -43609851 - AluSp/q SINE Alu -18 295 191 6011 93 25 10 chr4 158718596 158719502 -43608845 - LOR1-int LTR ERV1 -4610 3510 2591 5718 97 14 16 chr4 158719502 158721188 -43607159 + L1PA8A LINE L1 4536 6125 -6 4576 110 7 19 chr4 158721227 158721964 -43606383 - LOR1-int LTR ERV1 -5524 2596 1869 1041 200 9 5 chr4 158721966 158722176 -43606171 + L1MC4 LINE L1 7155 7365 -677 2334 119 3 0 chr4 158722277 158722604 -43605743 - THE1B LTR MaLR -36 328 1 216 231 0 0 chr4 158722782 158722834 -43605513 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 24 0 0 0 chr4 158722914 158722938 -43605409 + AT_rich Low_complexity Low_complexity 1 24 0 28 48 0 0 chr4 158723186 158723228 -43605119 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr4 158723397 158723432 -43604915 + AT_rich Low_complexity Low_complexity 1 35 0 836 262 112 70 chr4 158724639 158725013 -43603334 - LTR16C LTR ERVL -23 468 79 816 360 55 24 chr4 158725679 158726185 -43602162 - HERV16 LTR ERVL -914 4850 4329 1385 240 36 25 chr4 158726199 158726591 -43601756 + MSTD LTR MaLR 1 396 0 1307 332 76 42 chr4 158726689 158727633 -43600714 - HERV16 LTR ERVL -1729 3925 2956 429 314 13 51 chr4 158727643 158727799 -43600548 - HERV16 LTR ERVL -2331 2665 2516 1521 124 76 76 chr4 158727799 158727975 -43600372 + MER44D DNA MER2_type 23 198 -2293 2245 98 0 13 chr4 158727975 158728290 -43600057 + AluY SINE Alu 1 311 0 1521 124 76 76 chr4 158728290 158728428 -43599919 + MER44D DNA MER2_type 197 607 -2 765 346 70 45 chr4 158728435 158729550 -43598797 - HERV16 LTR ERVL -3216 2548 1338 2252 150 73 53 chr4 158729550 158730058 -43598289 - MLT2B1 LTR ERVL -2 518 1 765 346 70 45 chr4 158730058 158730598 -43597749 - HERV16 LTR ERVL -4426 1338 813 1027 201 42 96 chr4 158731077 158731390 -43596957 - LTR16C LTR ERVL 0 491 196 324 0 0 0 chr4 158731398 158731434 -43596913 + (TG)n Simple_repeat Simple_repeat 2 37 0 190 259 0 19 chr4 158731545 158731599 -43596748 + L2 LINE L2 1993 2045 -1269 548 355 114 40 chr4 158731618 158732596 -43595751 + L2 LINE L2 2234 3260 -12 290 358 0 0 chr4 158732661 158732742 -43595605 + L2 LINE L2 3182 3262 -10 550 277 89 5 chr4 158736271 158736484 -43591863 - MER21B LTR ERV1 -61 802 572 * 828 237 75 9 chr4 158736483 158736711 -43591636 - MER21B LTR ERV1 -523 340 98 577 293 15 40 chr4 158738134 158738407 -43589940 + L1 LINE L1 3724 3989 -2157 263 255 28 124 chr4 158738572 158738658 -43589689 - L2 LINE L2 0 3272 3204 1206 206 8 4 chr4 158738658 158738896 -43589451 - MER8 DNA MER2_type 0 239 1 263 255 28 124 chr4 158738896 158738954 -43589393 - L2 LINE L2 -68 3204 3142 301 267 112 34 chr4 158739100 158739306 -43589041 + L1 LINE L1 4398 4619 -1527 238 326 74 19 chr4 158739417 158739675 -43588672 + L1 LINE L1 4744 5015 -1131 690 164 56 97 chr4 158739817 158740012 -43588335 - L1MA8 LINE L1 -3 6288 6102 24 0 0 0 chr4 158740216 158740240 -43588107 + AT_rich Low_complexity Low_complexity 1 24 0 1941 149 36 36 chr4 158742152 158742542 -43585805 - MLT1B LTR MaLR 0 390 1 189 220 132 44 chr4 158742694 158742785 -43585562 + MIR SINE MIR 57 155 -107 181 250 0 0 chr4 158743152 158743192 -43585155 + MIR SINE MIR 115 154 -108 198 269 0 39 chr4 158743311 158743363 -43584984 + L2 LINE L2 3221 3270 -2 1007 271 114 4 chr4 158744021 158744459 -43583888 + MLT1H LTR MaLR 1 549 0 618 206 38 38 chr4 158745278 158745462 -43582885 + Charlie1 DNA MER1_type 2578 2761 0 27 29 0 0 chr4 158745660 158745694 -43582653 + AT_rich Low_complexity Low_complexity 1 34 0 1625 221 98 38 chr4 158745697 158746835 -43581512 - L1ME1 LINE L1 -63 6363 5133 5175 247 67 37 chr4 158746844 158746863 -43581484 - L1ME1 LINE L1 -1981 4425 4408 2693 80 16 8 chr4 158746863 158747249 -43581098 - L1PA8 LINE L1 -6 6166 5778 5175 247 67 37 chr4 158747249 158748070 -43580277 - L1ME1 LINE L1 -1998 4408 3612 1936 118 14 3 chr4 158748070 158748357 -43579990 - AluSx SINE Alu -2 310 21 5175 247 67 37 chr4 158748357 158751084 -43577263 - L1ME1 LINE L1 -2794 3612 772 263 268 14 72 chr4 158751808 158751946 -43576401 - L1ME1 LINE L1 -5935 461 332 612 257 7 7 chr4 158752313 158752453 -43575894 + MER58B DNA MER1_type 196 335 -6 221 333 23 11 chr4 158752630 158752717 -43575630 - L2 LINE L2 -1 3271 3184 377 365 37 5 chr4 158752731 158752920 -43575427 - L3 LINE CR1 -192 1385 1191 26 0 0 0 chr4 158753458 158753484 -43574863 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 158754145 158754167 -43574180 + AT_rich Low_complexity Low_complexity 1 22 0 365 295 84 37 chr4 158755114 158755304 -43573043 + MIR SINE MIR 6 204 -58 22 35 0 0 chr4 158757178 158757207 -43571140 + AT_rich Low_complexity Low_complexity 1 29 0 1807 167 0 0 chr4 158758692 158758974 -43569373 - AluSx SINE Alu -30 282 1 438 301 17 30 chr4 158760115 158760351 -43567996 + L1ME LINE L1 5540 5772 -349 362 289 52 52 chr4 158760370 158760475 -43567872 - L1ME4a LINE L1 -212 5909 5805 495 287 108 0 chr4 158760475 158760632 -43567715 + MER96 DNA MER1_type 2 175 0 362 289 52 52 chr4 158760632 158760737 -43567610 - L1ME4a LINE L1 -315 5806 5699 438 251 37 55 chr4 158761278 158761441 -43566906 - MIR SINE MIR -99 163 4 6004 136 8 3 chr4 158761812 158762739 -43565608 + HSMAR2 DNA Mariner 369 1299 -3 2081 222 92 11 chr4 158763015 158763493 -43564854 + LTR40a LTR ERVL 1 517 -2 312 290 43 19 chr4 158764022 158764229 -43564118 - L1M4 LINE L1 -3085 3061 2850 362 273 39 26 chr4 158765329 158765483 -43562864 - MIR SINE MIR -41 221 66 193 338 166 13 chr4 158766052 158766209 -43562138 - MIR3 SINE MIR -11 197 17 331 275 0 0 chr4 158768234 158768325 -43560022 + L1MC4 LINE L1 6613 6703 -1339 2169 134 0 0 chr4 158769409 158769716 -43558631 - AluSx SINE Alu -5 307 1 199 326 83 30 chr4 158769730 158769862 -43558485 - L2 LINE L2 0 3313 3175 223 306 0 0 chr4 158771128 158771190 -43557157 - L2 LINE L2 -10 3303 3242 248 296 28 0 chr4 158773400 158773471 -43554876 + MIR SINE MIR 79 151 -111 185 0 0 39 chr4 158774227 158774253 -43554094 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 646 307 104 53 chr4 158775298 158775712 -43552635 + MLT1J LTR MaLR 7 441 -70 931 271 96 60 chr4 158775719 158776199 -43552148 + MLT1D LTR MaLR 1 497 -8 202 231 0 0 chr4 158777024 158777063 -43551284 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 321 274 210 27 chr4 158777064 158777250 -43551097 - MIR SINE MIR -12 250 31 21 82 0 0 chr4 158777627 158777676 -43550671 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 158778357 158778378 -43549969 + AT_rich Low_complexity Low_complexity 1 21 0 239 291 23 23 chr4 158779045 158779131 -43549216 - MIR SINE MIR -21 241 156 334 291 88 20 chr4 158779280 158779428 -43548919 - MIR SINE MIR -99 163 6 207 137 0 59 chr4 158780947 158780998 -43547349 + (TC)n Simple_repeat Simple_repeat 1 48 0 561 283 68 41 chr4 158781005 158781298 -43547049 + L2 LINE L2 1607 1907 -1407 409 294 103 53 chr4 158781370 158781710 -43546637 + L2 LINE L2 1821 2177 -1137 1014 224 15 0 chr4 158782745 158782941 -43545406 + MIR SINE MIR 2 200 -62 801 189 5 94 chr4 158782941 158783132 -43545215 - MER20 DNA MER1_type 0 219 46 244 324 0 0 chr4 158783149 158783217 -43545130 + MIR SINE MIR 190 257 -5 536 298 77 0 chr4 158784500 158784668 -43543679 - MIR SINE MIR -10 252 72 207 244 0 0 chr4 158784788 158784866 -43543481 + (TA)n Simple_repeat Simple_repeat 1 78 0 219 370 25 0 chr4 158784977 158785058 -43543289 - L2 LINE L2 -46 3226 3144 3770 31 0 0 chr4 158786483 158786928 -43541419 + L1PA4 LINE L1 5706 6150 -5 189 329 193 14 chr4 158787007 158787147 -43541200 + L2 LINE L2 3108 3272 0 353 278 0 0 chr4 158787486 158787583 -43540764 - MIR SINE MIR 0 262 166 613 306 79 5 chr4 158788796 158789012 -43539335 - MIR SINE MIR 0 262 31 486 228 40 0 chr4 158792682 158792783 -43535564 + MER5A DNA MER1_type 2 106 -83 1672 220 52 52 chr4 158792846 158793421 -43534926 + MER34B LTR ERV1 14 565 0 7578 30 0 1 chr4 158793589 158794496 -43533851 - L1PA4 LINE L1 -1050 5096 4191 968 32 0 0 chr4 158794491 158794614 -43533733 + L1PA4 LINE L1 5093 5215 -931 * 7281 38 8 3 chr4 158794649 158795593 -43532754 + L1PA4 LINE L1 5208 6155 0 594 256 92 92 chr4 158795729 158796417 -43531930 + L1ME3A LINE L1 5270 5957 -213 481 218 12 45 chr4 158796740 158796862 -43531485 - MLT1G1 LTR MaLR -262 333 179 22 0 0 0 chr4 158796967 158796989 -43531358 + AT_rich Low_complexity Low_complexity 1 22 0 481 218 12 45 chr4 158797464 158797586 -43530761 - MLT1G1 LTR MaLR -262 333 179 19342 166 12 25 chr4 158797602 158802217 -43526130 - L1PA14 LINE L1 -18 6794 2235 264 47 0 70 chr4 158802212 158802255 -43526092 + L1PA13 LINE L1 2180 2219 -4568 * 2367 183 22 0 chr4 158802275 158802680 -43525667 - L1PA14 LINE L1 -4967 1820 1407 5155 241 87 19 chr4 158802707 158803885 -43524462 - L1PA14 LINE L1 -5529 1258 1 341 278 151 16 chr4 158803901 158804052 -43524295 - MLT1G1 LTR MaLR -388 207 2 291 265 98 68 chr4 158804075 158804339 -43524008 - MLT1G1-int LTR MaLR -20 1715 1444 631 333 171 11 chr4 158805026 158805482 -43522865 - MLT1G1-int LTR MaLR -827 544 1 703 250 135 23 chr4 158805482 158805924 -43522423 - MLT1G1 LTR MaLR 0 590 19 341 336 63 44 chr4 158805924 158806242 -43522105 + L2 LINE L2 1737 2060 -1254 651 227 0 0 chr4 158807042 158807161 -43521186 - FLAM_A SINE Alu -13 120 2 215 174 22 0 chr4 158807500 158807546 -43520801 + T-rich Low_complexity Low_complexity 5 51 0 22 0 0 0 chr4 158807657 158807679 -43520668 + AT_rich Low_complexity Low_complexity 1 22 0 2024 118 18 0 chr4 158808068 158808386 -43519961 + AluSx SINE Alu 1 323 0 3887 190 48 13 chr4 158809703 158810859 -43517488 - L1MB7 LINE L1 -2 6182 4989 2474 149 50 0 chr4 158811553 158811949 -43516398 + MSTC LTR MaLR 1 416 -12 378 108 0 0 chr4 158813782 158813847 -43514500 + (CA)n Simple_repeat Simple_repeat 2 66 0 532 280 76 58 chr4 158814220 158814706 -43513641 + L1ME2 LINE L1 813 1307 -5065 311 241 136 49 chr4 158814716 158814878 -43513469 + L1ME2 LINE L1 2254 2429 -3955 1850 154 4 4 chr4 158815231 158815511 -43512836 + AluSx SINE Alu 1 280 -32 396 0 0 0 chr4 158815512 158815556 -43512791 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 422 276 49 60 chr4 158815575 158816188 -43512159 + L1ME2 LINE L1 2912 3517 -2865 273 186 17 0 chr4 158816298 158816357 -43511990 + L1ME2 LINE L1 3917 3976 -2406 805 264 51 0 chr4 158816381 158816578 -43511769 - MIR SINE MIR -27 235 29 1595 213 113 24 chr4 158816579 158817085 -43511262 + L1ME2 LINE L1 5709 6259 -141 1311 250 55 15 chr4 158817085 158817443 -43510904 - MLT1E3 LTR MaLR 0 624 221 2012 49 38 23 chr4 158817466 158817732 -43510615 + L1PA8 LINE L1 5497 5766 -406 2480 83 6 22 chr4 158817840 158818254 -43510093 + L1PA8 LINE L1 5792 6199 0 837 258 64 0 chr4 158818257 158818477 -43509870 - MLT1E1 LTR MaLR -433 210 1 253 286 0 0 chr4 158818494 158818571 -43509776 + L1ME2 LINE L1 6315 6391 -9 * 408 215 54 0 chr4 158818558 158818691 -43509656 + L1ME3 LINE L1 4217 4360 -2022 233 292 10 73 chr4 158818691 158818787 -43509560 + LTR40a LTR ERVL 290 379 -140 1380 74 0 5 chr4 158818787 158818976 -43509371 - L1PA6 LINE L1 -1 6153 5966 21079 88 98 2 chr4 158818976 158822352 -43505995 - L1P2 LINE L1 -618 5536 1819 2473 211 27 35 chr4 158822337 158822900 -43505447 - L1P2 LINE L1 -5577 569 12 * 591 238 0 8 chr4 158822908 158823034 -43505313 + LTR40b LTR ERVL 313 437 -25 2095 130 0 3 chr4 158823043 158823335 -43505012 - AluSx SINE Alu -21 291 1 849 268 106 35 chr4 158823357 158823498 -43504849 + L1ME3A LINE L1 5640 5770 -400 5634 132 33 15 chr4 158823498 158824405 -43503942 - MER49 LTR ERV1 0 923 1 849 268 106 35 chr4 158824405 158824744 -43503603 + L1ME3A LINE L1 5770 6154 -16 315 292 71 24 chr4 158824772 158825028 -43503319 + L1ME3 LINE L1 4620 4894 -1488 296 86 0 57 chr4 158826094 158826164 -43502183 + (TG)n Simple_repeat Simple_repeat 2 67 0 575 323 98 8 chr4 158826244 158826479 -43501868 - MIR SINE MIR 0 262 7 1514 186 7 0 chr4 158826504 158826773 -43501574 + AluJb SINE Alu 12 282 -30 40 21 0 0 chr4 158826774 158826821 -43501526 + AT_rich Low_complexity Low_complexity 1 47 0 2011 141 3 0 chr4 158827343 158827634 -43500713 + AluSx SINE Alu 1 292 -20 24 0 0 0 chr4 158828136 158828160 -43500187 + AT_rich Low_complexity Low_complexity 1 24 0 21 95 0 0 chr4 158828253 158828316 -43500031 + AT_rich Low_complexity Low_complexity 1 63 0 625 285 121 41 chr4 158828350 158828969 -43499378 + L1ME3 LINE L1 5504 6180 -218 1064 230 83 46 chr4 158829499 158829825 -43498522 + MER2 DNA MER2_type 7 344 -1 2254 114 0 0 chr4 158830810 158831109 -43497238 - AluSx SINE Alu -13 299 1 1796 46 0 0 chr4 158832278 158832497 -43495850 + L1PA4 LINE L1 5933 6151 -4 21 71 0 0 chr4 158832570 158832612 -43495735 + AT_rich Low_complexity Low_complexity 1 42 0 651 201 18 47 chr4 158832755 158832924 -43495423 - L1MC2 LINE L1 -26 6318 6155 2809 7 0 0 chr4 158833354 158833661 -43494686 - AluYa5 SINE Alu -4 307 1 4253 203 28 14 chr4 158833689 158834623 -43493724 - L1MA9 LINE L1 -38 6274 5328 3693 70 8 18 chr4 158834799 158835313 -43493034 + L1PA7 LINE L1 5641 6149 -5 576 189 82 50 chr4 158835588 158835747 -43492600 + L1MC4a LINE L1 6400 6563 -1245 356 208 20 10 chr4 158835731 158835832 -43492515 + L1MD3 LINE L1 6976 7077 -918 * 23 0 0 0 chr4 158836373 158836396 -43491951 + AT_rich Low_complexity Low_complexity 1 23 0 1044 249 94 70 chr4 158836737 158837291 -43491056 + MER90 LTR ERV1 9 575 0 347 0 23 0 chr4 158838500 158838543 -43489804 + (CA)n Simple_repeat Simple_repeat 1 44 0 189 107 0 0 chr4 158839220 158839248 -43489099 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 201 74 0 0 chr4 158839452 158839479 -43488868 + (CTG)n Simple_repeat Simple_repeat 3 29 0 453 300 54 0 chr4 158839954 158840084 -43488263 + MIR SINE MIR 42 178 -84 183 239 136 80 chr4 158840715 158840803 -43487544 - MIR SINE MIR -68 140 48 182 304 87 29 chr4 158841681 158841750 -43486597 - L2 LINE L2 0 3313 3241 225 347 21 32 chr4 158842560 158842655 -43485692 - L2 LINE L2 -23 3290 3197 226 146 24 0 chr4 158842793 158842834 -43485513 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 2600 171 16 76 chr4 158842874 158843517 -43484830 - L1MB8 LINE L1 -5 6173 5570 222 37 0 0 chr4 158843630 158843657 -43484690 + (TG)n Simple_repeat Simple_repeat 2 28 0 216 0 0 0 chr4 158844352 158844376 -43483971 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 232 390 19 49 chr4 158844686 158844891 -43483456 - L2 LINE L2 -177 3095 2897 195 42 0 0 chr4 158845218 158845242 -43483105 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 23 97 0 0 chr4 158845732 158845804 -43482543 + AT_rich Low_complexity Low_complexity 1 72 0 550 216 39 61 chr4 158846373 158846554 -43481793 - L2 LINE L2 -2 3311 3135 192 220 0 80 chr4 158847611 158847661 -43480686 - L2 LINE L2 -12 3260 3215 505 133 10 31 chr4 158849048 158849146 -43479201 - MER53 DNA DNA -93 96 1 1188 215 44 0 chr4 158850396 158850647 -43477700 + L1PB4 LINE L1 5883 6144 -12 271 214 12 107 chr4 158854100 158854184 -43474163 - L2 LINE L2 0 3272 3197 297 309 0 0 chr4 158854673 158854767 -43473580 + L1MC4 LINE L1 6610 6703 -1339 216 0 0 0 chr4 158854767 158854791 -43473556 + (TA)n Simple_repeat Simple_repeat 2 25 0 306 204 11 80 chr4 158854827 158854915 -43473432 + L2 LINE L2 3232 3313 0 4653 190 29 2 chr4 158855434 158856312 -43472035 + MER54A LTR ERVL 1 901 0 391 303 162 48 chr4 158856791 158857019 -43471328 - MIR SINE MIR -6 256 3 1408 125 32 4 chr4 158857216 158857464 -43470883 + L1MA7 LINE L1 6031 6285 -6 1863 160 0 6 chr4 158857920 158858232 -43470115 - AluSx SINE Alu -2 310 1 257 0 0 29 chr4 158859357 158859391 -43468956 + (TG)n Simple_repeat Simple_repeat 2 34 0 204 125 0 0 chr4 158859816 158859848 -43468499 + (TA)n Simple_repeat Simple_repeat 1 32 0 2231 97 7 0 chr4 158860428 158860736 -43467611 - AluY SINE Alu -1 310 1 360 316 80 44 chr4 158860753 158860978 -43467369 + MIR SINE MIR 14 246 -16 485 286 51 23 chr4 158861664 158861839 -43466508 + MLT1J2 LTR MaLR 38 217 -233 610 253 6 13 chr4 158861980 158862138 -43466209 + MLT1C LTR MaLR 311 467 0 384 257 93 98 chr4 158862215 158862581 -43465766 - L1M4 LINE L1 -1736 4410 4047 323 308 66 35 chr4 158862628 158862855 -43465492 - L1M4 LINE L1 -2285 3861 3628 324 263 0 13 chr4 158863183 158863259 -43465088 + MIR SINE MIR 150 224 -38 322 246 185 0 chr4 158863271 158863401 -43464946 - L1M4 LINE L1 -2919 3227 3074 225 83 0 0 chr4 158863637 158863673 -43464674 + (TG)n Simple_repeat Simple_repeat 1 36 0 351 91 0 121 chr4 158863898 158863964 -43464383 + Alu SINE Alu 245 302 0 258 188 31 0 chr4 158864191 158864287 -43464060 + (TA)n Simple_repeat Simple_repeat 2 100 0 487 77 77 0 chr4 158864432 158864510 -43463837 + L1MA2 LINE L1 6213 6296 -8 989 141 67 113 chr4 158864702 158864986 -43463361 + L1MA9 LINE L1 5622 5892 -420 1106 101 58 0 chr4 158865120 158865308 -43463039 + L1MA9 LINE L1 6114 6312 0 1870 179 36 6 chr4 158865308 158865666 -43462681 + L1MD1 LINE L1 5480 5848 -511 1502 206 6 9 chr4 158865682 158866012 -43462335 + L1MD1 LINE L1 5908 6236 -6 242 200 80 53 chr4 158866174 158866249 -43462098 - MIR SINE MIR -77 185 109 288 286 48 9 chr4 158867099 158867204 -43461143 - MIR SINE MIR -54 208 100 683 233 40 83 chr4 158867264 158867492 -43460855 - MER20 DNA MER1_type 0 219 2 202 284 25 76 chr4 158867762 158867918 -43460429 + MIR SINE MIR 1 144 -64 193 195 0 0 chr4 158868638 158868679 -43459668 - L2 LINE L2 0 3313 3273 2712 158 16 0 chr4 158868681 158869119 -43459228 - LOR1a LTR ERV1 0 497 53 1042 121 38 0 chr4 158869119 158869276 -43459071 - LOR1-int LTR ERV1 -4044 4076 3914 573 200 33 0 chr4 158869378 158869498 -43458849 + L1MC4 LINE L1 7918 8041 -1 435 239 310 17 chr4 158869561 158869800 -43458547 - L2 LINE L2 -1278 2036 1728 24 0 0 0 chr4 158872230 158872254 -43456093 + AT_rich Low_complexity Low_complexity 1 24 0 330 256 43 51 chr4 158872320 158872437 -43455910 - L2 LINE L2 -37 3276 3161 1591 153 24 0 chr4 158872443 158872692 -43455655 + AluJb SINE Alu 1 255 -57 321 60 0 71 chr4 158872700 158872784 -43455563 + (TA)n Simple_repeat Simple_repeat 2 79 0 977 288 85 33 chr4 158872785 158873383 -43454964 - L2 LINE L2 -151 3162 2530 533 265 12 37 chr4 158873568 158873730 -43454617 + MIR3 SINE MIR 49 206 -2 2073 144 131 8 chr4 158874987 158875368 -43452979 + MSTA LTR MaLR 1 428 0 430 361 103 40 chr4 158875487 158875886 -43452461 + L2 LINE L2 2889 3312 -1 1586 240 33 24 chr4 158876028 158876482 -43451865 + MLT1C LTR MaLR 6 463 -4 23 0 0 0 chr4 158876683 158876706 -43451641 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 158877004 158877034 -43451313 + AT_rich Low_complexity Low_complexity 1 30 0 318 265 78 48 chr4 158878169 158878335 -43450012 - L1ME4a LINE L1 -3 6118 5948 2568 138 41 5 chr4 158878388 158878801 -43449546 + MSTC LTR MaLR 1 428 0 2363 221 138 50 chr4 158878815 158878902 -43449445 - MER21B LTR ERV1 -60 803 725 2313 115 0 3 chr4 158878902 158879216 -43449131 - AluSq SINE Alu 0 313 1 2363 221 138 50 chr4 158879216 158879866 -43448481 - MER21B LTR ERV1 -138 725 1 371 287 55 98 chr4 158879888 158880327 -43448020 - L1ME4a LINE L1 -313 5808 5389 31255 106 9 25 chr4 158881586 158888007 -43440340 - L1PA7 LINE L1 -3 6466 11 2613 181 27 35 chr4 158888542 158889061 -43439286 + MLT2B2 LTR ERVL 1 515 0 29 78 0 0 chr4 158889191 158889255 -43439092 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr4 158890357 158890378 -43437969 + AT_rich Low_complexity Low_complexity 1 21 0 483 351 12 6 chr4 158890814 158890985 -43437362 - MIR SINE MIR -71 191 20 251 226 0 0 chr4 158891443 158891496 -43436851 + L2 LINE L2 3216 3268 -4 546 268 67 18 chr4 158891772 158891936 -43436411 + MIR SINE MIR 16 187 -75 191 310 60 35 chr4 158892124 158892240 -43436107 - L2 LINE L2 -13 3259 3141 232 177 63 13 chr4 158892761 158892840 -43435507 + (TA)n Simple_repeat Simple_repeat 2 84 0 225 65 0 0 chr4 158892904 158892935 -43435412 + (TG)n Simple_repeat Simple_repeat 2 32 0 354 246 40 79 chr4 158893964 158894090 -43434257 + L2 LINE L2 3146 3266 -6 326 208 26 0 chr4 158894195 158894272 -43434075 - MER116 DNA Mariner 0 80 2 603 219 0 8 chr4 158894875 158894998 -43433349 + MER94 DNA DNA 1 122 -12 280 332 155 0 chr4 158895608 158895795 -43432552 - MIR SINE MIR -24 238 23 186 143 0 0 chr4 158898809 158898844 -43429503 + (TG)n Simple_repeat Simple_repeat 2 36 0 363 310 118 15 chr4 158899548 158899751 -43428596 + L1M4 LINE L1 4204 4427 -1719 344 248 58 22 chr4 158900414 158900551 -43427796 - L1ME LINE L1 -315 5806 5665 1362 147 33 88 chr4 158900701 158901007 -43427340 - L1PB4 LINE L1 -7 6149 5861 265 314 108 10 chr4 158901591 158901693 -43426654 - L2 LINE L2 0 3272 3161 2269 75 0 14 chr4 158902410 158902702 -43425645 + AluY SINE Alu 16 303 -8 221 300 58 67 chr4 158903419 158903539 -43424808 + MIR SINE MIR 36 154 -108 584 340 0 5 chr4 158904145 158904348 -43423999 - MIR SINE MIR 0 262 61 180 0 0 0 chr4 158905042 158905062 -43423285 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1549 179 47 66 chr4 158905897 158906228 -43422119 - MLT1A2 LTR MaLR 0 374 49 2065 117 70 25 chr4 158906228 158906587 -43421760 + THE1C LTR MaLR 1 375 0 1549 179 47 66 chr4 158906587 158906636 -43421711 - MLT1A2 LTR MaLR -325 49 1 670 292 94 67 chr4 158906653 158907183 -43421164 + L2 LINE L2 2760 3303 -10 1698 246 66 52 chr4 158907821 158908365 -43419982 - MLT1G1 LTR MaLR -43 552 1 198 194 0 28 chr4 158910506 158910542 -43417805 + MIR SINE MIR 29 63 -199 521 301 19 24 chr4 158910695 158910904 -43417443 - L2 LINE L2 0 3313 3106 2117 113 27 3 chr4 158911614 158911915 -43416432 + AluSq SINE Alu 1 308 -5 453 248 10 10 chr4 158912654 158912755 -43415592 + MIR SINE MIR 41 141 -121 268 188 0 0 chr4 158912976 158913024 -43415323 + MIR SINE MIR 205 252 -10 250 285 70 64 chr4 158913518 158913690 -43414657 - L1P3 LINE L1 -590 5582 5410 246 220 0 17 chr4 158913752 158913811 -43414536 - L1M4 LINE L1 -1983 4163 4106 245 292 71 35 chr4 158913821 158913934 -43414413 - MLT1J LTR MaLR -48 463 347 263 316 61 52 chr4 158914190 158914765 -43413582 - L1M4 LINE L1 -2157 3989 3410 276 30 0 0 chr4 158915239 158915272 -43413075 + (CA)n Simple_repeat Simple_repeat 2 34 0 403 316 102 0 chr4 158915324 158915511 -43412836 + MIR SINE MIR 46 251 -11 207 167 0 0 chr4 158915894 158915936 -43412411 + A-rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr4 158916096 158916124 -43412223 + AT_rich Low_complexity Low_complexity 1 28 0 260 214 29 39 chr4 158916509 158916612 -43411735 + (CAGAGA)n Simple_repeat Simple_repeat 3 104 0 754 151 8 0 chr4 158916802 158916921 -43411426 + FLAM_C SINE Alu 1 120 -23 1800 262 102 42 chr4 158918007 158918754 -43409593 + L2 LINE L2 2045 2836 -478 807 137 25 31 chr4 158918821 158918982 -43409365 + L1MA10 LINE L1 6175 6334 0 352 245 7 72 chr4 158919037 158919176 -43409171 + L2 LINE L2 3150 3279 -34 394 148 20 40 chr4 158919176 158919325 -43409022 + GA-rich Low_complexity Low_complexity 1 146 0 465 228 12 17 chr4 158919367 158919711 -43408636 + GA-rich Low_complexity Low_complexity 1 342 0 24 0 0 0 chr4 158919838 158919862 -43408485 + AT_rich Low_complexity Low_complexity 1 24 0 1240 203 114 22 chr4 158920835 158921248 -43407099 - Charlie4a DNA MER1_type -33 475 25 346 352 48 0 chr4 158922511 158922636 -43405711 - L2 LINE L2 -2 3270 3140 414 0 0 0 chr4 158924213 158924259 -43404088 + (CA)n Simple_repeat Simple_repeat 2 47 0 1193 171 9 28 chr4 158927994 158928211 -43400136 - AluJo SINE Alu -17 295 83 2189 116 3 3 chr4 158929025 158929319 -43399028 + AluSc SINE Alu 1 294 -15 846 177 174 97 chr4 158929361 158929660 -43398687 - MLT1B LTR MaLR 0 390 69 306 102 51 17 chr4 158929660 158929719 -43398628 - MSTA LTR MaLR 0 428 368 4530 178 101 15 chr4 158929720 158930669 -43397678 - MSTA-int LTR MaLR -620 1031 1 1974 153 23 0 chr4 158930669 158931015 -43397332 - MSTA LTR MaLR 0 428 75 31331 34 1 0 chr4 158931015 158934987 -43393360 - L1P LINE L1 -1080 5066 1094 698 83 0 0 chr4 158934987 158935083 -43393264 - L1P LINE L1 -6050 96 1 958 278 93 16 chr4 158935098 158935529 -43392818 + L2 LINE L2 1372 1835 -1479 864 292 129 13 chr4 158935580 158935953 -43392394 + L2 LINE L2 2139 2554 -760 304 327 0 0 chr4 158936754 158936855 -43391492 + CT-rich Low_complexity Low_complexity 2 102 0 386 248 0 84 chr4 158937738 158937928 -43390419 + MLT1I LTR MaLR 227 567 0 645 297 48 108 chr4 158938956 158939312 -43389035 - L3 LINE CR1 -81 1496 1173 1450 181 3 57 chr4 158939312 158939479 -43388868 - AluJo SINE Alu -15 297 153 2282 107 0 0 chr4 158939479 158939778 -43388569 - AluSc SINE Alu -10 299 1 1450 181 3 57 chr4 158939778 158939924 -43388423 - AluJo SINE Alu -159 153 1 645 297 48 108 chr4 158939924 158940028 -43388319 - L3 LINE CR1 -404 1173 1064 566 299 147 9 chr4 158941247 158941458 -43386889 + MIR SINE MIR 11 250 -12 199 146 0 125 chr4 158941427 158941475 -43386872 + L2 LINE L2 3265 3306 -7 * 568 221 0 26 chr4 158941568 158941681 -43386666 - MIR3 SINE MIR -6 202 93 23 54 0 0 chr4 158941718 158941755 -43386592 + AT_rich Low_complexity Low_complexity 1 37 0 2076 108 3 11 chr4 158943423 158943709 -43384638 - AluSx SINE Alu -24 288 5 246 260 0 14 chr4 158943903 158943976 -43384371 + (TA)n Simple_repeat Simple_repeat 2 73 0 206 133 0 44 chr4 158943989 158944034 -43384313 + (CATA)n Simple_repeat Simple_repeat 2 44 0 273 303 217 0 chr4 158944120 158944232 -43384115 + MIR SINE MIR 12 98 -164 2281 55 0 17 chr4 158944232 158944522 -43383825 + AluY SINE Alu 18 302 -9 273 303 217 0 chr4 158944522 158944561 -43383786 + MIR SINE MIR 98 196 -66 370 321 46 23 chr4 158945406 158945537 -43382810 + L2 LINE L2 3178 3311 -2 218 176 20 0 chr4 158946117 158946168 -43382179 + (TA)n Simple_repeat Simple_repeat 2 53 0 309 343 41 99 chr4 158946920 158947212 -43381135 - L2 LINE L2 0 3272 2998 231 219 0 31 chr4 158947877 158947941 -43380406 + CT-rich Low_complexity Low_complexity 4 65 0 549 264 134 35 chr4 158948656 158949058 -43379289 - HAL1 LINE L1 0 2507 2066 403 221 9 35 chr4 158949052 158949165 -43379182 - L1ME LINE L1 -583 5579 5470 * 24 0 0 0 chr4 158949324 158949348 -43378999 + AT_rich Low_complexity Low_complexity 1 24 0 811 226 124 83 chr4 158950035 158950294 -43378053 - MSTC LTR MaLR 0 428 144 2077 112 11 3 chr4 158950294 158950581 -43377766 - AluSp SINE Alu -20 293 5 811 226 124 83 chr4 158950581 158950732 -43377615 - MSTC LTR MaLR -284 144 1 23 0 0 0 chr4 158950861 158950884 -43377463 + AT_rich Low_complexity Low_complexity 1 23 0 284 309 79 61 chr4 158953257 158953422 -43374925 - MIR3 SINE MIR -8 200 33 659 160 0 0 chr4 158953427 158953546 -43374801 - MER115 DNA AcHobo -9 684 566 3263 131 33 35 chr4 158953547 158953685 -43374662 - LTR24C LTR ERV1 0 635 498 6344 35 0 0 chr4 158953685 158954453 -43373894 + L1PA4 LINE L1 5392 6159 0 3263 131 33 35 chr4 158954453 158954949 -43373398 - LTR24C LTR ERV1 -137 498 1 372 240 19 0 chr4 158954959 158955063 -43373284 - LTR24C-int LTR ERV1 -10 5113 5008 715 333 48 21 chr4 158955443 158956096 -43372251 - LTR24C-int LTR ERV1 -447 6675 6014 679 143 0 0 chr4 158956718 158956816 -43371531 - AluSg/x SINE Alu -15 297 200 727 245 32 53 chr4 158960055 158960434 -43367913 - LTR24C-int LTR ERV1 -4478 645 275 3064 119 59 79 chr4 158960567 158960701 -43367646 - LTR24C LTR ERV1 -2 633 498 2247 116 0 34 chr4 158960701 158961021 -43367326 + AluSx SINE Alu 1 309 -3 3064 119 59 79 chr4 158961021 158961532 -43366815 - LTR24C LTR ERV1 -137 498 1 461 313 138 70 chr4 158961533 158962063 -43366284 - MER115 DNA AcHobo -126 567 2 227 339 77 8 chr4 158962847 158962977 -43365370 - MIR SINE MIR -70 192 54 430 95 81 0 chr4 158963140 158963214 -43365133 + MADE1 DNA Mariner 1 80 0 873 225 58 17 chr4 158963372 158963612 -43364735 - L1MC3 LINE L1 -963 6822 6573 346 167 62 94 chr4 158963610 158963706 -43364641 - L1MC4a LINE L1 -1461 6347 6264 * 220 195 0 0 chr4 158965031 158965072 -43363275 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 2610 88 6 3 chr4 158965844 158966198 -43362149 - THE1A LTR MaLR 0 355 1 11625 92 17 1 chr4 158966198 158967752 -43360595 - THE1A-int LTR MaLR 0 1580 2 2422 87 60 0 chr4 158967753 158968088 -43360259 - THE1A LTR MaLR 0 355 1 976 222 0 5 chr4 158968091 158968298 -43360049 + MER2 DNA MER2_type 6 211 -134 233 359 0 9 chr4 158969555 158969661 -43358686 + CT-rich Low_complexity Low_complexity 2 106 0 348 284 97 28 chr4 158969814 158969990 -43358357 - L1MEd LINE L1 -5923 196 9 20071 36 0 0 chr4 158969990 158972903 -43355444 + L1P2 LINE L1 2821 5734 -421 20340 113 18 20 chr4 158973003 158977316 -43351031 - L1P3 LINE L1 -2096 4365 5 1146 249 119 35 chr4 158978064 158978399 -43349948 - MER114 LTR ERV -3 645 340 492 18 0 0 chr4 158978399 158978456 -43349891 + (TA)n Simple_repeat Simple_repeat 2 58 0 1146 249 119 35 chr4 158978456 158978715 -43349632 - MER114 LTR ERV -308 340 1 2226 199 24 16 chr4 158978877 158979394 -43348953 + MER39 LTR ERV1 1 707 0 207 0 0 0 chr4 158980001 158980024 -43348323 + (A)n Simple_repeat Simple_repeat 1 23 0 421 288 97 57 chr4 158981274 158981448 -43346899 + MIR3 SINE MIR 5 197 -11 748 82 0 0 chr4 158981956 158982076 -43346271 + AluY SINE Alu 186 305 0 557 151 0 9 chr4 158982376 158982482 -43345865 + GA-rich Low_complexity Low_complexity 3 107 0 25 0 0 0 chr4 158983646 158983671 -43344676 + AT_rich Low_complexity Low_complexity 1 25 0 369 342 62 21 chr4 158983770 158983963 -43344384 + MLT1J2 LTR MaLR 43 243 -207 646 76 11 0 chr4 158983986 158984078 -43344269 + AluS SINE Alu 1 93 -220 12837 66 14 13 chr4 159034078 159035756 -43292591 - HERVL LTR ERVL -15 5639 3961 337 326 50 14 chr4 159035937 159036078 -43292269 - MER5A DNA MER1_type -29 160 15 662 229 19 19 chr4 159038535 159038692 -43289655 + MER3 DNA MER1_type 1 157 -52 2383 95 27 6 chr4 159039595 159039931 -43288416 + MLT2A2 LTR ERVL 111 453 0 263 267 0 33 chr4 159039999 159040089 -43288258 - MLT1I LTR MaLR -266 143 57 239 302 47 0 chr4 159040090 159040176 -43288171 - MLT1I LTR MaLR -289 120 31 2237 50 0 79 chr4 159041264 159041581 -43286766 + AluY SINE Alu 1 292 -19 2296 101 0 3 chr4 159041647 159041954 -43286393 + AluY SINE Alu 1 306 -5 563 316 48 35 chr4 159042033 159042261 -43286086 - MIR SINE MIR 0 262 32 340 203 76 59 chr4 159042277 159042395 -43285952 - MER94 DNA DNA -14 120 1 195 129 0 0 chr4 159043205 159043236 -43285111 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 359 345 60 54 chr4 159044490 159044858 -43283489 + HAL1b LINE L1 9 378 -970 1185 166 31 69 chr4 159044864 159045153 -43283194 - MLT1A1 LTR MaLR 0 365 88 226 284 0 0 chr4 159045340 159045414 -43282933 + (ATTG)n Simple_repeat Simple_repeat 3 76 0 295 306 36 61 chr4 159045598 159045876 -43282471 + L1MB4 LINE L1 5660 5930 -250 * 1253 226 62 55 chr4 159045637 159046071 -43282276 + L1ME3 LINE L1 5696 6132 -30 815 319 129 43 chr4 159046137 159047151 -43281196 + L1ME LINE L1 2903 4003 -2143 692 313 158 9 chr4 159047118 159047858 -43280489 + L1ME LINE L1 4787 5640 -786 * 291 306 0 9 chr4 159047899 159048007 -43280340 + L1ME LINE L1 5711 5817 -353 30 27 0 0 chr4 159048106 159048143 -43280204 + AT_rich Low_complexity Low_complexity 1 37 0 33 56 0 0 chr4 159048573 159048627 -43279720 + AT_rich Low_complexity Low_complexity 1 54 0 1567 184 123 6 chr4 159048978 159049310 -43279037 + MLT1A2 LTR MaLR 4 374 0 302 326 78 7 chr4 159049329 159049470 -43278877 - MIR SINE MIR -111 151 1 2184 122 0 0 chr4 159049662 159049966 -43278381 - AluSx SINE Alu -8 304 1 22 0 0 0 chr4 159050084 159050106 -43278241 + AT_rich Low_complexity Low_complexity 1 22 0 1983 141 0 3 chr4 159050761 159051045 -43277302 - AluSx SINE Alu -29 283 1 420 225 27 54 chr4 159052841 159052952 -43275395 + L2 LINE L2 3206 3313 0 503 328 25 107 chr4 159053050 159053306 -43275041 - L2 LINE L2 0 3272 3052 1881 148 0 31 chr4 159053306 159053643 -43274704 - AluSx SINE Alu 0 328 1 503 328 25 107 chr4 159053643 159053751 -43274596 - L2 LINE L2 -220 3052 2937 1701 203 129 6 chr4 159053923 159054436 -43273911 + L1MD3 LINE L1 7158 7783 -2 442 287 96 24 chr4 159054523 159054861 -43273486 + L1ME LINE L1 5268 5629 -492 24 32 0 0 chr4 159055135 159055166 -43273181 + AT_rich Low_complexity Low_complexity 1 31 0 1503 167 110 4 chr4 159055332 159055613 -43272734 + AluJo SINE Alu 1 311 -1 2118 129 79 15 chr4 159055737 159056079 -43272268 - THE1B LTR MaLR 0 364 1 5656 95 9 0 chr4 159056079 159056827 -43271520 - THE1B-int LTR MaLR 0 1580 826 6025 76 0 10 chr4 159056928 159057718 -43270629 - HERVL LTR ERVL -1666 3988 3207 333 0 0 0 chr4 159057718 159057755 -43270592 + (CA)n Simple_repeat Simple_repeat 1 37 0 3043 81 25 0 chr4 159057755 159058152 -43270195 - MLT2A2 LTR ERVL -46 407 1 5507 107 18 0 chr4 159058300 159059073 -43269274 - THE1B-int LTR MaLR -793 787 1 1685 127 178 19 chr4 159059073 159059387 -43268960 - THE1B LTR MaLR 0 364 1 270 282 8 34 chr4 159060651 159060768 -43267579 + HAL1b LINE L1 1193 1306 -42 908 294 117 66 chr4 159061269 159062000 -43266347 + L2 LINE L2 2538 3313 0 336 246 0 45 chr4 159063000 159063110 -43265237 + CT-rich Low_complexity Low_complexity 2 106 0 674 308 82 68 chr4 159064331 159064770 -43263577 - L2 LINE L2 -44 3269 2825 321 307 104 39 chr4 159064858 159065078 -43263269 + L1 LINE L1 4299 4552 -1594 1977 128 38 44 chr4 159065078 159065444 -43262903 - THE1B LTR MaLR 0 364 1 321 307 104 39 chr4 159065444 159065578 -43262769 + L1 LINE L1 4552 4676 -1470 1850 248 67 89 chr4 159068570 159070250 -43258097 + L1MB8 LINE L1 734 2551 -4012 1132 244 44 27 chr4 159070250 159070655 -43257692 + L1MB8 LINE L1 5228 5639 -743 350 155 0 0 chr4 159070637 159070695 -43257652 + L1P2 LINE L1 5386 5443 -711 * 1859 220 75 12 chr4 159070664 159071159 -43257188 + L1MB8 LINE L1 5653 6178 0 1921 138 26 13 chr4 159071172 159071477 -43256870 + AluSx SINE Alu 1 309 -3 1089 252 64 19 chr4 159071539 159071853 -43256494 + MLT1B LTR MaLR 1 328 -62 558 210 8 8 chr4 159071985 159072104 -43256243 + L1ME1 LINE L1 5889 6007 -159 186 426 17 9 chr4 159072768 159072883 -43255464 + MIR SINE MIR 17 132 -76 1496 298 27 36 chr4 159074491 159075014 -43253333 - MLT1-int LTR MaLR -131 1240 723 898 199 15 6 chr4 159075016 159075342 -43253005 + MSTD LTR MaLR 3 394 -2 1670 252 22 86 chr4 159075460 159076098 -43252249 - MLT1-int LTR MaLR -712 659 63 1149 242 28 58 chr4 159076113 159076169 -43252178 - MLT2C1 LTR ERVL 0 397 341 261 0 0 0 chr4 159076169 159076198 -43252149 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 375 23 0 0 chr4 159076197 159076241 -43252106 + (GA)n Simple_repeat Simple_repeat 2 45 0 1149 242 28 58 chr4 159076198 159076577 -43251770 - MLT2C1 LTR ERVL -56 341 17 488 234 155 68 chr4 159076636 159076904 -43251443 + HAL1b LINE L1 380 623 -725 798 11 0 0 chr4 159076904 159076995 -43251352 + (GGAAA)n Simple_repeat Simple_repeat 4 94 0 488 234 155 68 chr4 159076995 159077196 -43251151 + HAL1b LINE L1 623 890 -458 271 221 91 152 chr4 159080180 159080411 -43247936 - L2 LINE L2 -4 3309 3093 1862 239 99 11 chr4 159080453 159081172 -43247175 + L1MEc LINE L1 731 1512 -4884 2045 273 64 3 chr4 159081178 159082024 -43246323 + L1MEc LINE L1 2609 3505 -2710 242 311 206 3 chr4 159082198 159082317 -43246030 + MIR3 SINE MIR 15 149 -66 895 231 99 25 chr4 159082522 159082764 -43245583 - MIR SINE MIR 0 262 3 28 0 0 0 chr4 159082889 159082917 -43245430 + AT_rich Low_complexity Low_complexity 1 28 0 1643 5 0 0 chr4 159083144 159083330 -43245017 - L1PA3 LINE L1 -188 5967 5782 1394 24 0 0 chr4 159083330 159083492 -43244855 + L1PA3 LINE L1 5990 6153 -2 212 217 232 0 chr4 159083656 159083725 -43244622 - L2 LINE L2 -12 3301 3217 4678 187 37 24 chr4 159083974 159084804 -43243543 + L1MA9 LINE L1 4303 5161 -1130 664 191 30 23 chr4 159084804 159084935 -43243412 + FLAM_A SINE Alu 1 132 -1 4678 187 37 24 chr4 159084935 159085567 -43242780 + L1MA9 LINE L1 5161 5783 -508 7271 45 0 0 chr4 159085567 159087021 -43241326 - L1PA5 LINE L1 0 6154 4702 2304 187 20 38 chr4 159087021 159087571 -43240776 + L1MA9 LINE L1 5773 6312 0 292 291 0 29 chr4 159088085 159088188 -43240159 + GA-rich Low_complexity Low_complexity 5 104 0 2636 7 0 10 chr4 159088982 159089280 -43239067 + AluYa5 SINE Alu 1 295 -16 1028 268 110 3 chr4 159089744 159090158 -43238189 + LTR16C LTR ERVL 4 491 0 920 296 81 10 chr4 159090680 159091067 -43237280 + L2 LINE L2 2626 3039 -274 227 190 0 69 chr4 159091078 159091136 -43237211 - LTR33A LTR ERVL -9 514 461 426 312 18 0 chr4 159091342 159091451 -43236896 - L2 LINE L2 -9 3263 3153 345 217 64 70 chr4 159092831 159092988 -43235359 - L1 LINE L1 -778 5368 5213 22 35 0 0 chr4 159093043 159093072 -43235275 + AT_rich Low_complexity Low_complexity 1 29 0 365 306 61 35 chr4 159093092 159093321 -43235026 - L1 LINE L1 -2929 3217 2983 339 282 26 34 chr4 159093341 159093458 -43234889 - MIR SINE MIR -119 143 28 1781 116 97 0 chr4 159093502 159093769 -43234578 - AluSc SINE Alu -16 293 1 2515 55 0 0 chr4 159093843 159094154 -43234193 - AluY SINE Alu 0 311 1 21 0 0 0 chr4 159094385 159094406 -43233941 + AT_rich Low_complexity Low_complexity 1 21 0 272 316 169 48 chr4 159094457 159094872 -43233475 + LTR67 LTR ERVL 81 545 -12 451 136 5 223 chr4 159095335 159095519 -43232828 + L1MA2 LINE L1 17 160 -7405 419 62 72 0 chr4 159095528 159095625 -43232722 + (TA)n Simple_repeat Simple_repeat 1 104 0 6459 142 26 6 chr4 159095677 159097696 -43230651 + L1MA2 LINE L1 5667 7723 0 3031 249 87 5 chr4 159097848 159098793 -43229554 + L1MB7 LINE L1 3886 4907 -1239 651 203 74 6 chr4 159098784 159098947 -43229400 - L1MA10 LINE L1 0 6334 6161 * 424 110 27 0 chr4 159099152 159099225 -43229122 + L1PA16 LINE L1 6083 6157 -9 2264 186 24 35 chr4 159099352 159100235 -43228112 + L1MB7 LINE L1 4939 5779 -395 612 106 131 4 chr4 159100257 159100368 -43227979 + L1PA15 LINE L1 5671 5791 -374 345 82 0 0 chr4 159100375 159100424 -43227923 + (CA)n Simple_repeat Simple_repeat 2 50 0 2332 137 8 16 chr4 159100464 159100844 -43227503 + L1PA15 LINE L1 5782 6158 -7 1727 144 21 56 chr4 159100844 159101183 -43227164 + L1MB7 LINE L1 5777 6103 -81 362 176 0 132 chr4 159101196 159101286 -43227061 + Tigger5 DNA MER2_type 1 78 -2245 282 167 0 0 chr4 159101286 159101328 -43227019 - Tigger5 DNA MER2_type -3 2320 2279 196 227 136 0 chr4 159101763 159101807 -43226540 - L2 LINE L2 0 3272 3223 1476 169 28 74 chr4 159101891 159102216 -43226131 + AluJo SINE Alu 1 310 -2 1368 210 107 65 chr4 159102218 159102524 -43225823 - MER39 LTR ERV1 -25 682 390 1963 150 14 33 chr4 159102524 159102890 -43225457 - MER46B DNA MER2_type -2 234 1 1368 210 107 65 chr4 159102890 159103063 -43225284 - MER39 LTR ERV1 -317 390 5 216 293 85 24 chr4 159103213 159103295 -43225052 - MIR SINE MIR -142 120 34 195 69 0 0 chr4 159103758 159103787 -43224560 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 21 0 0 0 chr4 159104445 159104466 -43223881 + AT_rich Low_complexity Low_complexity 1 21 0 269 129 16 65 chr4 159105508 159105570 -43222777 + L2 LINE L2 3213 3271 -1 4744 163 54 8 chr4 159105636 159106598 -43221749 - L1MB3 LINE L1 -3 6180 5178 271 217 0 43 chr4 159106840 159106909 -43221438 + GA-rich Low_complexity Low_complexity 2 67 0 2200 105 7 0 chr4 159107160 159107464 -43220883 + AluSp SINE Alu 1 306 -7 1311 167 0 5 chr4 159107674 159107889 -43220458 + AluJb SINE Alu 97 310 -2 200 83 0 28 chr4 159108028 159108064 -43220283 + (TA)n Simple_repeat Simple_repeat 2 36 0 190 237 34 17 chr4 159108615 159108674 -43219673 + L2 LINE L2 3160 3219 -94 658 342 122 39 chr4 159108758 159109140 -43219207 + L3 LINE CR1 971 1415 -162 1522 213 30 35 chr4 159109140 159109507 -43218840 - MLT1A1 LTR MaLR 0 365 1 658 342 122 39 chr4 159109507 159109683 -43218664 + L3 LINE CR1 1415 1575 -2 460 238 133 35 chr4 159109796 159109939 -43218408 - L2 LINE L2 -11 3302 3146 1166 317 120 7 chr4 159109942 159110400 -43217947 - LTR33 LTR ERVL -4 517 8 40044 69 8 3 chr4 159110442 159116563 -43211784 + L1PA5 LINE L1 1 6153 -1 630 156 7 85 chr4 159116709 159116850 -43211497 + AluJo/FLAM SINE Alu 1 130 -182 2030 108 10 29 chr4 159116853 159117159 -43211188 + AluSq SINE Alu 1 300 -13 23 0 0 0 chr4 159117159 159117182 -43211165 + AT_rich Low_complexity Low_complexity 1 23 0 4104 265 90 24 chr4 159117182 159118724 -43209623 - L2 LINE L2 -260 3053 1421 425 254 23 77 chr4 159119879 159120009 -43208338 - L2 LINE L2 -16 3256 3134 786 272 24 5 chr4 159120350 159120563 -43207784 + MIR SINE MIR 46 262 0 221 281 169 0 chr4 159120570 159120659 -43207688 - L2 LINE L2 -353 2960 2857 180 315 0 0 chr4 159121329 159121383 -43206964 + L2 LINE L2 3173 3226 -87 661 246 51 28 chr4 159121824 159122039 -43206308 - MIR SINE MIR 0 262 43 603 91 0 0 chr4 159122602 159122690 -43205657 - L1MA3 LINE L1 0 6305 6218 14943 173 46 23 chr4 159122690 159128494 -43199853 - L1MA2 LINE L1 -144 7579 1908 459 35 0 0 chr4 159128494 159128551 -43199796 + (TC)n Simple_repeat Simple_repeat 2 58 0 14943 173 46 23 chr4 159128551 159128943 -43199404 - L1MA2 LINE L1 -5815 1908 1526 2204 113 3 0 chr4 159128943 159129243 -43199104 + AluSg SINE Alu 1 301 -9 14943 173 46 23 chr4 159129243 159130513 -43197834 - L1MA2 LINE L1 -6197 1526 19 268 228 0 0 chr4 159132234 159132291 -43196056 - L1MC4 LINE L1 -1338 6704 6648 5444 138 50 6 chr4 159133638 159134691 -43193656 - L1MA8 LINE L1 0 6291 5194 3595 163 5 14 chr4 159135018 159135608 -43192739 + LTR69 LTR ERVL 3 587 -1 22 0 0 0 chr4 159135847 159135869 -43192478 + AT_rich Low_complexity Low_complexity 1 22 0 445 334 138 25 chr4 159137120 159137629 -43190718 - L2 LINE L2 -377 2937 2372 304 304 43 29 chr4 159137849 159137987 -43190360 - MIR SINE MIR -118 144 5 2321 190 52 12 chr4 159138762 159139246 -43189101 + MLT1D LTR MaLR 1 503 -2 231 329 116 19 chr4 159139313 159139529 -43188818 - L2 LINE L2 0 3313 3077 1848 129 126 15 chr4 159139837 159140163 -43188184 - THE1B LTR MaLR -1 363 2 189 107 0 0 chr4 159140224 159140252 -43188095 + (A)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr4 159141960 159141981 -43186366 + AT_rich Low_complexity Low_complexity 1 21 0 423 325 208 43 chr4 159142930 159143512 -43184835 + L3 LINE CR1 35 712 -865 27 0 0 0 chr4 159144601 159144628 -43183719 + AT_rich Low_complexity Low_complexity 1 27 0 189 0 0 0 chr4 159144628 159144649 -43183698 + (CA)n Simple_repeat Simple_repeat 2 22 0 1508 161 7 25 chr4 159144876 159145155 -43183192 + AluJo SINE Alu 14 287 -25 188 86 29 0 chr4 159145161 159145196 -43183151 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1596 153 56 35 chr4 159145421 159145708 -43182639 + AluJo SINE Alu 1 293 -19 372 324 54 47 chr4 159145725 159146003 -43182344 + HAL1b LINE L1 205 484 -864 409 314 39 43 chr4 159146395 159146745 -43181602 + L1MC/D LINE L1 5271 5618 -503 325 241 38 25 chr4 159146828 159146907 -43181440 - L2 LINE L2 0 3313 3234 1149 199 44 116 chr4 159146981 159147108 -43181239 + MLT1A1 LTR MaLR 31 166 -199 1718 136 4 0 chr4 159147108 159147350 -43180997 + AluSq SINE Alu 1 243 -70 1149 199 44 116 chr4 159147350 159147583 -43180764 + MLT1A1 LTR MaLR 166 365 0 457 341 66 21 chr4 159147835 159148169 -43180178 + L2 LINE L2 1330 1678 -1636 278 299 98 47 chr4 159148279 159148553 -43179794 + L2 LINE L2 1956 2243 -1071 886 282 107 6 chr4 159148686 159149005 -43179342 - L2 LINE L2 -4 3309 2959 354 286 177 77 chr4 159149091 159149690 -43178657 + L2 LINE L2 2222 2880 -434 1985 145 52 12 chr4 159150063 159150387 -43177960 + MER1B DNA MER1_type 1 337 0 183 152 0 0 chr4 159150587 159150620 -43177727 - L2 LINE L2 0 3313 3281 24 67 0 0 chr4 159150701 159150746 -43177601 + AT_rich Low_complexity Low_complexity 1 45 0 191 222 0 0 chr4 159151749 159151785 -43176562 - L2 LINE L2 0 3313 3278 467 278 56 0 chr4 159151805 159151913 -43176434 - L2 LINE L2 -8 3305 3192 205 370 127 22 chr4 159152095 159152276 -43176071 - L2 LINE L2 -132 3140 2941 295 325 143 39 chr4 159152510 159152818 -43175529 - L2 LINE L2 -643 2671 2332 409 264 186 0 chr4 159152844 159152973 -43175374 + MIR SINE MIR 37 189 -73 1248 108 0 0 chr4 159153716 159153882 -43174465 + AluSq SINE Alu 129 294 -19 3046 90 35 7 chr4 159154717 159155149 -43173198 + MLT2A1 LTR ERVL 1 444 0 186 43 0 0 chr4 159156767 159156790 -43171557 + (TG)n Simple_repeat Simple_repeat 2 24 0 202 167 15 15 chr4 159156800 159156866 -43171481 + GA-rich Low_complexity Low_complexity 1 66 0 23 0 0 0 chr4 159157618 159157641 -43170706 + AT_rich Low_complexity Low_complexity 1 23 0 1807 156 3 3 chr4 159157643 159157931 -43170416 - AluSx SINE Alu -24 288 1 1678 236 53 39 chr4 159158127 159158640 -43169707 + LTR55 LTR ERV 14 533 -15 1408 184 47 18 chr4 159158788 159159066 -43169281 + AluJb SINE Alu 1 286 -26 991 233 37 43 chr4 159159144 159159533 -43168814 + MLT1H LTR MaLR 41 549 0 5403 149 23 6 chr4 159161105 159162065 -43166282 + L1MA8 LINE L1 5316 6291 0 1086 176 0 0 chr4 159162567 159162743 -43165604 - FRAM SINE Alu -8 168 1 504 279 184 26 chr4 159163189 159163580 -43164767 + L1ME4a LINE L1 5558 6010 -111 608 230 0 0 chr4 159163942 159164068 -43164279 + FLAM_A SINE Alu 4 129 -4 1237 149 21 25 chr4 159166426 159166661 -43161686 - L1PA15 LINE L1 0 6165 5932 727 98 0 0 chr4 159166679 159166781 -43161566 - L1PB3 LINE L1 -5 6149 6048 5988 160 25 7 chr4 159166781 159168533 -43159814 - L1PA15 LINE L1 -262 5903 4124 344 224 26 0 chr4 159170276 159170352 -43157995 + MER5A DNA MER1_type 4 81 -108 549 298 95 75 chr4 159170532 159170932 -43157415 + L3 LINE CR1 116 523 -1054 651 281 6 91 chr4 159171154 159171506 -43156841 - L2 LINE L2 0 3313 2992 282 116 0 0 chr4 159171547 159171590 -43156757 + (TA)n Simple_repeat Simple_repeat 2 44 0 187 170 19 19 chr4 159171761 159171814 -43156533 + GA-rich Low_complexity Low_complexity 3 55 0 265 320 39 0 chr4 159171965 159172043 -43156304 + L3 LINE CR1 1032 1112 -465 612 0 0 0 chr4 159172592 159172660 -43155687 + (TA)n Simple_repeat Simple_repeat 2 69 0 268 311 101 50 chr4 159172742 159172961 -43155386 + L3 LINE CR1 1345 1574 -3 558 0 0 0 chr4 159173570 159173632 -43154715 + (TA)n Simple_repeat Simple_repeat 2 63 0 394 307 87 42 chr4 159173698 159173939 -43154408 + L3 LINE CR1 1323 1574 -3 22 0 0 0 chr4 159175244 159175266 -43153081 + AT_rich Low_complexity Low_complexity 1 22 0 416 310 48 14 chr4 159176150 159176295 -43152052 + MIR3 SINE MIR 44 193 -15 1065 264 37 13 chr4 159176623 159177006 -43151341 - L1ME LINE L1 -2625 3455 3064 338 240 16 25 chr4 159176997 159177118 -43151229 - L1ME LINE L1 -3425 2655 2536 * 453 187 112 15 chr4 159177121 159177255 -43151092 - L1ME LINE L1 -5207 863 717 967 288 55 23 chr4 159177343 159177690 -43150657 - L1ME LINE L1 -5625 445 88 207 0 0 0 chr4 159178652 159178675 -43149672 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1727 192 83 0 chr4 159178846 159179206 -43149141 + MLT1B LTR MaLR 1 390 0 288 154 0 0 chr4 159180616 159180668 -43147679 + T-rich Low_complexity Low_complexity 1 52 0 3992 62 0 0 chr4 159180838 159181340 -43147007 - L1PA7 LINE L1 0 6154 5653 23 33 0 0 chr4 159181769 159181799 -43146548 + AT_rich Low_complexity Low_complexity 1 30 0 24903 43 2 1 chr4 159181842 159185720 -43142627 - L1PA5 LINE L1 -2 6152 2273 21 36 0 0 chr4 159185857 159185885 -43142462 + AT_rich Low_complexity Low_complexity 1 28 0 4540 57 0 10 chr4 159237203 159237796 -43090551 - L1PA4 LINE L1 -2 6153 5567 715 185 8 0 chr4 159238020 159238150 -43090197 + FRAM SINE Alu 16 146 -30 375 196 211 16 chr4 159238152 159238291 -43090056 + L1MC3 LINE L1 6153 7767 -2 215 342 27 9 chr4 159238308 159238419 -43089928 - L2 LINE L2 -2597 717 605 3286 161 33 0 chr4 159241045 159241655 -43086692 + L1MB3 LINE L1 5540 6169 -14 37 39 0 0 chr4 159241655 159241706 -43086641 + AT_rich Low_complexity Low_complexity 1 51 0 1010 107 11 45 chr4 159241735 159241912 -43086435 + L1PA8 LINE L1 5949 6119 -53 720 91 0 106 chr4 159241913 159242008 -43086339 + L1PA8 LINE L1 6053 6132 -40 2092 122 10 0 chr4 159242008 159242304 -43086043 - AluSp SINE Alu -14 299 1 720 91 0 106 chr4 159242304 159242340 -43086007 + L1PA8 LINE L1 6132 6170 -2 963 115 19 6 chr4 159242973 159243130 -43085217 + L1MA5A LINE L1 6136 6294 -3 25 0 0 0 chr4 159243130 159243155 -43085192 + AT_rich Low_complexity Low_complexity 1 25 0 306 0 0 0 chr4 159243678 159243712 -43084635 + (TG)n Simple_repeat Simple_repeat 2 35 0 207 0 0 0 chr4 159244107 159244130 -43084217 + (TG)n Simple_repeat Simple_repeat 1 23 0 217 233 0 0 chr4 159244534 159244577 -43083770 + GA-rich Low_complexity Low_complexity 4 46 0 1112 190 206 19 chr4 159245308 159245618 -43082729 - MER39 LTR ERV1 0 707 340 509 246 206 14 chr4 159245618 159245827 -43082520 - MER39 LTR ERV1 -415 274 1 2972 64 20 25 chr4 159245960 159246365 -43081982 + MLT2A1 LTR ERVL 1 403 -41 636 294 61 49 chr4 159247193 159247638 -43080709 + L1ME3A LINE L1 656 1105 -5014 2190 123 0 0 chr4 159247688 159247988 -43080359 - AluSx SINE Alu -6 306 7 233 254 78 82 chr4 159248094 159248362 -43079985 + L1ME3A LINE L1 1230 1496 -4814 25 31 0 0 chr4 159248692 159248724 -43079623 + AT_rich Low_complexity Low_complexity 1 32 0 605 316 91 4 chr4 159248902 159249177 -43079170 + L1ME3A LINE L1 5330 5628 -517 585 279 66 53 chr4 159249374 159249675 -43078672 + L1ME3A LINE L1 5630 5934 -219 311 314 157 0 chr4 159250570 159250710 -43077637 - MIR SINE MIR -52 210 49 404 223 9 80 chr4 159251471 159251583 -43076764 - MER5A DNA MER1_type -77 112 9 595 209 108 27 chr4 159251693 159251841 -43076506 + MER2 DNA MER2_type 186 345 0 269 233 83 0 chr4 159252011 159252071 -43076276 - MER2 DNA MER2_type 0 345 281 2000 77 87 14 chr4 159252080 159252366 -43075981 + AluY SINE Alu 1 307 -4 838 191 0 129 chr4 159252424 159252665 -43075682 - MER2 DNA MER2_type -135 210 1 24 67 0 0 chr4 159252986 159253031 -43075316 + AT_rich Low_complexity Low_complexity 1 45 0 227 256 12 37 chr4 159254259 159254299 -43074048 + (CTA)n Simple_repeat Simple_repeat 3 42 -40 468 232 152 82 chr4 159254299 159254614 -43073733 + MER46C DNA MER2_type 1 337 -1 227 256 12 37 chr4 159254614 159254655 -43073692 + (CTA)n Simple_repeat Simple_repeat 42 82 0 14804 180 42 23 chr4 159255990 159262357 -43065990 + L1MA4 LINE L1 544 7710 -9 1151 154 161 39 chr4 159262374 159262492 -43065855 - THE1C LTR MaLR -51 324 222 189 0 0 0 chr4 159262492 159262513 -43065834 + (GA)n Simple_repeat Simple_repeat 1 21 0 1151 154 161 39 chr4 159262513 159262680 -43065667 - THE1C LTR MaLR -153 222 4 3665 23 5 0 chr4 159263972 159264403 -43063944 - L1PA4 LINE L1 0 6155 5723 354 311 81 45 chr4 159264715 159264937 -43063410 + L2 LINE L2 2746 2975 -339 1482 117 36 0 chr4 159265027 159265249 -43063098 + MER30 DNA MER1_type 1 230 0 4711 180 43 2 chr4 159266250 159267636 -43060711 + L1PB4 LINE L1 4356 5820 -336 225 0 0 0 chr4 159267636 159267661 -43060686 + (TA)n Simple_repeat Simple_repeat 1 25 0 4711 180 43 2 chr4 159267661 159268009 -43060338 + L1PB4 LINE L1 5820 6152 -4 1713 181 68 11 chr4 159268226 159268403 -43059944 + MLT1B LTR MaLR 1 167 -223 2073 151 0 0 chr4 159268403 159268715 -43059632 + AluSx SINE Alu 1 312 0 1713 181 68 11 chr4 159268715 159268890 -43059457 + MLT1B LTR MaLR 167 373 -17 195 162 0 0 chr4 159270478 159270515 -43057832 + (TA)n Simple_repeat Simple_repeat 2 38 0 1737 70 0 4 chr4 159270868 159271095 -43057252 - AluY SINE Alu -9 302 77 1529 205 43 35 chr4 159271426 159271796 -43056551 + L1ME2 LINE L1 5782 6154 -10 228 243 81 27 chr4 159271866 159271977 -43056370 + L1MC4 LINE L1 7924 8040 -2 23 0 0 0 chr4 159272431 159272454 -43055893 + AT_rich Low_complexity Low_complexity 1 23 0 405 277 183 24 chr4 159273634 159273847 -43054500 + MIR SINE MIR 5 251 -11 26 0 0 0 chr4 159273913 159273939 -43054408 + AT_rich Low_complexity Low_complexity 1 26 0 257 404 22 7 chr4 159274751 159274887 -43053460 - L2 LINE L2 -9 3304 3167 1007 181 33 0 chr4 159276211 159276426 -43051921 + L1MA9 LINE L1 6088 6309 -3 1294 177 29 20 chr4 159276457 159276802 -43051545 - MER3 DNA MER1_type 0 2590 2243 608 147 43 9 chr4 159276816 159276932 -43051415 - MER3 DNA MER1_type -41 168 49 337 311 44 7 chr4 159277432 159277567 -43050780 - MIR SINE MIR -99 163 24 371 246 318 8 chr4 159277992 159278118 -43050229 + MER5B DNA MER1_type 1 165 -13 450 323 123 60 chr4 159279714 159280281 -43048066 + HAL1b LINE L1 95 697 -651 473 247 93 6 chr4 159281850 159282032 -43046315 + L1ME LINE L1 5524 5721 -400 2790 221 9 20 chr4 159282034 159282595 -43045752 + MER68 LTR ERV1 1 555 -7 25 65 0 0 chr4 159282598 159282644 -43045703 + AT_rich Low_complexity Low_complexity 1 46 0 2864 13 0 0 chr4 159284070 159284383 -43043964 + AluYb8 SINE Alu 1 313 -5 1972 117 4 14 chr4 159285184 159285465 -43042882 - AluSx SINE Alu 0 312 35 680 208 81 44 chr4 159285923 159286221 -43042126 + L1MC5 LINE L1 7609 7917 -44 382 269 43 57 chr4 159286516 159286657 -43041690 + L2 LINE L2 3162 3300 -13 1416 262 28 9 chr4 159287216 159287648 -43040699 + L1ME2 LINE L1 17 456 -5967 33 0 0 0 chr4 159287795 159287828 -43040519 + AT_rich Low_complexity Low_complexity 1 33 0 2932 233 100 19 chr4 159287832 159288052 -43040295 + L1ME2 LINE L1 4860 5061 -1898 2889 13 0 0 chr4 159288052 159288369 -43039978 + AluYb8 SINE Alu 1 317 -1 2932 233 100 19 chr4 159288369 159289865 -43038482 + L1ME2 LINE L1 5061 6719 -240 272 237 40 0 chr4 159290250 159290326 -43038021 + L1ME2 LINE L1 6881 6959 0 1953 151 3 0 chr4 159290340 159290644 -43037703 + AluJo SINE Alu 6 310 -2 1602 174 4 29 chr4 159290829 159291110 -43037237 + AluJb SINE Alu 1 274 -38 1060 130 0 0 chr4 159291350 159291511 -43036836 - L1MA2 LINE L1 -10 6294 6134 1923 141 10 10 chr4 159291915 159292205 -43036142 + AluSx SINE Alu 1 290 -22 27 62 0 0 chr4 159294075 159294123 -43034224 + AT_rich Low_complexity Low_complexity 1 48 0 364 332 50 81 chr4 159294312 159294595 -43033752 - L2 LINE L2 -23 3249 2976 421 262 37 0 chr4 159295063 159295170 -43033177 - MER81 DNA DNA -3 111 1 664 309 16 0 chr4 159295510 159295756 -43032591 - L1ME3A LINE L1 -272 5881 5632 521 206 0 0 chr4 159295763 159295860 -43032487 + MER5A DNA MER1_type 14 110 -79 382 312 64 4 chr4 159295972 159296206 -43032141 - L1ME3A LINE L1 -623 5538 5291 349 272 128 15 chr4 159296263 159296458 -43031889 - L1ME3A LINE L1 -897 5232 5016 501 231 136 6 chr4 159296470 159296639 -43031708 - L1ME3A LINE L1 0 6170 5980 530 210 153 93 chr4 159297090 159297338 -43031009 + LTR41 LTR ERVL 504 766 -7 317 266 164 6 chr4 159297406 159297583 -43030764 - L1ME3A LINE L1 -2659 3470 3266 2129 125 0 0 chr4 159297771 159298060 -43030287 + AluSq SINE Alu 1 289 -24 300 302 47 57 chr4 159298319 159298531 -43029816 - L1ME3A LINE L1 -4431 1698 1489 269 320 70 0 chr4 159298534 159298662 -43029685 - HAL1 LINE L1 -918 1589 1453 213 250 0 0 chr4 159298663 159298711 -43029636 + T-rich Low_complexity Low_complexity 1 48 0 409 281 62 53 chr4 159298712 159299261 -43029086 - L1MEd LINE L1 -4870 1249 786 2847 24 9 0 chr4 159299380 159299711 -43028636 - L1PA5 LINE L1 -266 5889 5556 2198 45 0 0 chr4 159299711 159299980 -43028367 + L1PA5 LINE L1 5886 6154 0 29 47 0 0 chr4 159300588 159300631 -43027716 + AT_rich Low_complexity Low_complexity 1 43 0 1045 244 135 28 chr4 159301123 159301474 -43026873 + MLT1C LTR MaLR 1 406 -61 2005 116 53 0 chr4 159301474 159301759 -43026588 - AluSx SINE Alu -12 300 1 1045 244 135 28 chr4 159301759 159301829 -43026518 + MLT1C LTR MaLR 406 467 0 5352 77 8 0 chr4 159302834 159303545 -43024802 + L1PA8 LINE L1 5456 6172 0 372 326 90 68 chr4 159303688 159304087 -43024260 + HAL1b LINE L1 5 412 -936 933 279 71 4 chr4 159304256 159304496 -43023851 - MER45C DNA AcHobo -694 259 4 193 197 33 0 chr4 159304508 159304569 -43023778 + (TA)n Simple_repeat Simple_repeat 2 64 0 23 0 0 0 chr4 159304811 159304834 -43023513 + AT_rich Low_complexity Low_complexity 1 23 0 291 279 81 29 chr4 159305091 159305227 -43023120 - MIR SINE MIR -50 212 70 785 141 31 0 chr4 159305308 159305436 -43022911 + MSTB LTR MaLR 1 132 -294 953 235 45 3 chr4 159305598 159305909 -43022438 + MER33 DNA MER1_type 1 324 0 32 0 0 0 chr4 159307134 159307166 -43021181 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr4 159307406 159307431 -43020916 + AT_rich Low_complexity Low_complexity 1 25 0 6019 164 37 16 chr4 159307863 159309898 -43018449 - L1MA6 LINE L1 -143 7178 5106 1033 49 7 0 chr4 159309890 159310032 -43018315 - L1P LINE L1 -2847 3299 3157 * 8807 27 2 0 chr4 159310029 159311737 -43016610 + L1PA3 LINE L1 4334 6044 -111 4432 242 53 36 chr4 159311839 159314575 -43013772 - L1MA6 LINE L1 -2988 4179 1688 925 340 47 11 chr4 159314928 159315290 -43013057 - L1MA6 LINE L1 -6152 1016 642 513 365 12 8 chr4 159315392 159315633 -43012714 - L1MA6 LINE L1 -6908 260 19 948 229 45 37 chr4 159315772 159316143 -43012204 + MLT2A2 LTR ERVL 121 510 -44 12717 107 9 24 chr4 159316148 159318469 -43009878 + L1P3 LINE L1 8 2335 -4126 1160 143 34 5 chr4 159318469 159318678 -43009669 + L1PA7 LINE L1 5939 6153 -1 302 321 37 50 chr4 159318810 159319028 -43009319 + L1M4 LINE L1 3175 3389 -2757 20485 56 6 4 chr4 159319064 159321912 -43006435 - L1P2 LINE L1 -577 5577 2727 14213 81 4 5 chr4 159321911 159323864 -43004483 + L1P2 LINE L1 768 2719 -3427 * 821 266 65 60 chr4 159324322 159324916 -43003431 - L2 LINE L2 -5 3308 2118 2361 290 52 20 chr4 159324966 159325813 -43002534 - L2 LINE L2 -2434 880 7 291 212 15 0 chr4 159325921 159325987 -43002360 - MIR SINE MIR -69 139 73 616 292 82 9 chr4 159326474 159326693 -43001654 - MIR SINE MIR -26 236 2 5912 203 49 23 chr4 159326841 159328760 -42999587 + L1PB1 LINE L1 3 1967 -4065 4175 191 46 12 chr4 159328754 159329680 -42998667 + L1MA4 LINE L1 5342 6299 -1 * 241 130 19 74 chr4 159330576 159330630 -42997717 - L2 LINE L2 -1 3312 3262 264 240 13 0 chr4 159332606 159332681 -42995666 - L1ME4a LINE L1 -37 6084 6009 655 296 32 49 chr4 159332702 159332949 -42995398 - MIR SINE MIR -18 244 2 243 266 60 65 chr4 159333141 159333340 -42995007 - L1ME4a LINE L1 -313 5808 5611 207 74 0 0 chr4 159333431 159333458 -42994889 + L2 LINE L2 3269 3295 -18 696 226 106 19 chr4 159337336 159337544 -42990803 - MER2 DNA MER2_type 0 345 120 7516 194 6 5 chr4 159337544 159339111 -42989236 + L1PB1 LINE L1 3751 5319 -1009 3360 80 34 2 chr4 159339111 159339567 -42988780 + L1PA7 LINE L1 5675 6154 0 5830 95 21 14 chr4 159339589 159340584 -42987763 + L1PB1 LINE L1 5323 6325 -8 553 215 0 56 chr4 159340605 159340749 -42987598 - MER2 DNA MER2_type -209 136 1 747 314 42 4 chr4 159341109 159341345 -42987002 - MIR SINE MIR -10 252 8 249 308 0 22 chr4 159342059 159342150 -42986197 + MLT1I LTR MaLR 73 161 -248 192 370 98 15 chr4 159343191 159343394 -42984953 + L2 LINE L2 2077 2296 -1018 494 297 22 5 chr4 159343648 159343885 -42984462 - L1M4 LINE L1 -3279 2867 2627 207 263 153 58 chr4 159343980 159344117 -42984230 + L2 LINE L2 3164 3313 0 1900 5 0 0 chr4 159344225 159344430 -42983917 - AluYa5 SINE Alu -2 309 105 213 319 138 35 chr4 159344700 159344816 -42983531 + L3 LINE CR1 1426 1553 -24 27 73 0 0 chr4 159344949 159345004 -42983343 + AT_rich Low_complexity Low_complexity 1 55 0 186 208 0 170 chr4 159345151 159345204 -42983143 + L2 LINE L2 3143 3186 -86 414 200 0 0 chr4 159345228 159345298 -42983049 - L2 LINE L2 -2 3270 3201 212 283 0 0 chr4 159345852 159345898 -42982449 - L2 LINE L2 -1898 1416 1371 891 332 59 37 chr4 159346057 159346548 -42981799 + L2 LINE L2 1788 2289 -1025 503 314 137 27 chr4 159346926 159347263 -42981084 + L2 LINE L2 2579 2952 -362 638 93 9 28 chr4 159347265 159347372 -42980975 + L1PA5 LINE L1 6048 6152 -2 431 218 127 9 chr4 159347442 159347552 -42980795 - MER63 DNA MER1_type -313 749 1 545 291 135 35 chr4 159347553 159347842 -42980505 + L2 LINE L2 2996 3313 0 305 167 0 0 chr4 159348336 159348384 -42979963 + L2 LINE L2 3266 3313 0 508 299 107 43 chr4 159348741 159348975 -42979372 + MIR SINE MIR 13 261 -1 234 0 0 0 chr4 159349660 159349686 -42978661 + (A)n Simple_repeat Simple_repeat 1 26 0 236 241 0 19 chr4 159349841 159349895 -42978452 + CT-rich Low_complexity Low_complexity 3 55 0 249 347 138 27 chr4 159349895 159350120 -42978227 + LTR40a LTR ERVL 192 441 -78 356 281 73 47 chr4 159350611 159350803 -42977544 + MIR SINE MIR 33 229 -33 21 0 0 0 chr4 159351454 159351475 -42976872 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr4 159352266 159352297 -42976050 + (CA)n Simple_repeat Simple_repeat 1 31 0 230 253 114 0 chr4 159354194 159354273 -42974074 - Charlie7 DNA MER1_type -2509 103 16 1075 204 32 0 chr4 159354294 159354510 -42973837 + MER58A DNA MER1_type 1 223 -1 2443 166 56 39 chr4 159354646 159355111 -42973236 + MLT2B2 LTR ERVL 1 473 -42 180 138 46 0 chr4 159355111 159355176 -42973171 + (TA)n Simple_repeat Simple_repeat 1 68 0 33 0 0 0 chr4 159355204 159355237 -42973110 + AT_rich Low_complexity Low_complexity 1 33 0 449 310 52 11 chr4 159356065 159356239 -42972108 + MIR3 SINE MIR 16 196 -12 231 246 16 16 chr4 159356453 159356514 -42971833 + Charlie8 DNA MER1_type 2357 2417 0 358 296 25 56 chr4 159356718 159356880 -42971467 + MIR3 SINE MIR 50 206 -2 246 319 58 29 chr4 159357147 159357285 -42971062 + MIR SINE MIR 12 153 -109 1188 242 124 45 chr4 159357366 159357792 -42970555 + LTR40c LTR ERVL 1 460 -5 274 279 39 29 chr4 159359481 159359585 -42968762 - MIR SINE MIR -70 192 88 207 315 98 11 chr4 159361136 159361228 -42967119 - MIR SINE MIR -75 133 34 350 307 163 50 chr4 159361307 159361509 -42966838 + MIR SINE MIR 22 246 -16 308 24 24 0 chr4 159362312 159362353 -42965994 + (CA)n Simple_repeat Simple_repeat 1 42 0 23 0 0 0 chr4 159362502 159362525 -42965822 + AT_rich Low_complexity Low_complexity 1 23 0 244 317 58 42 chr4 159362533 159362653 -42965694 - L2 LINE L2 -30 3283 3162 4257 260 104 31 chr4 159363090 159364486 -42963861 + L2 LINE L2 836 2128 -1186 2930 171 16 39 chr4 159364486 159365048 -42963299 - MER44D DNA MER2_type -1 604 1 7476 172 134 28 chr4 159365048 159366631 -42961716 - MER52A LTR ERV1 0 1755 3 4257 260 104 31 chr4 159366631 159366804 -42961543 + L2 LINE L2 2127 2521 -793 2432 209 78 42 chr4 159366804 159367420 -42960927 + MER21B LTR ERV1 215 852 -11 1209 234 154 14 chr4 159368466 159368907 -42959440 - MLT1D LTR MaLR 0 505 3 2308 113 3 0 chr4 159368962 159369272 -42959075 + AluSq SINE Alu 1 311 -2 467 270 27 20 chr4 159369425 159369573 -42958774 - MLT1K LTR MaLR -60 528 380 435 336 58 27 chr4 159369621 159369844 -42958503 - MLT1K LTR MaLR -357 231 2 291 292 0 0 chr4 159370953 159371018 -42957329 - MER2 DNA MER2_type -1 344 280 668 138 26 0 chr4 159371057 159371173 -42957174 - MER2 DNA MER2_type -142 203 85 8637 204 8 10 chr4 159371194 159374031 -42954316 - L1PB3 LINE L1 -1 6153 3323 495 223 11 0 chr4 159374031 159374125 -42954222 - MER2 DNA MER2_type -247 98 4 221 198 12 0 chr4 159374439 159374520 -42953827 + (CA)n Simple_repeat Simple_repeat 1 82 0 21 0 0 0 chr4 159374745 159374766 -42953581 + AT_rich Low_complexity Low_complexity 1 21 0 35 0 0 0 chr4 159374825 159374860 -42953487 + AT_rich Low_complexity Low_complexity 1 35 0 503 345 42 28 chr4 159375694 159375981 -42952366 + L2 LINE L2 221 511 -2803 734 0 0 11 chr4 159375983 159376070 -42952277 + (GAAA)n Simple_repeat Simple_repeat 2 87 0 610 284 104 33 chr4 159376097 159376432 -42951915 + L2 LINE L2 1289 1647 -1667 413 242 61 10 chr4 159376435 159376534 -42951813 + L2 LINE L2 2118 2221 -1093 729 150 82 7 chr4 159376535 159376682 -42951665 + MER33 DNA MER1_type 1 158 -166 333 85 21 0 chr4 159376731 159376778 -42951569 - Alu SINE Alu -34 267 220 1274 115 33 6 chr4 159376778 159376961 -42951386 - AluSq SINE Alu -125 188 1 474 164 39 0 chr4 159376963 159377067 -42951280 + MER33 DNA MER1_type 250 357 -6 810 274 48 17 chr4 159377078 159377370 -42950977 + L2 LINE L2 2236 2536 -778 1050 211 0 14 chr4 159377775 159377988 -42950359 - MER63A DNA MER1_type 0 210 1 415 367 100 37 chr4 159378021 159378370 -42949977 + L2 LINE L2 2849 3219 -53 312 196 0 0 chr4 159378615 159378671 -42949676 - MLT1J1 LTR MaLR -390 56 1 1688 105 0 13 chr4 159379373 159379601 -42948746 - AluSc SINE Alu -1 308 84 248 385 93 32 chr4 159380097 159380642 -42947705 + L2 LINE L2 2468 3081 -191 196 283 101 88 chr4 159380850 159381030 -42947317 + L2 LINE L2 2220 2407 -907 1323 185 30 112 chr4 159381030 159381424 -42946923 + MLT1A1 LTR MaLR 4 365 0 196 283 101 88 chr4 159381424 159381561 -42946786 + L2 LINE L2 2407 2541 -773 378 302 31 0 chr4 159381644 159381803 -42946544 + MER103 DNA DNA 2 165 -1 187 327 126 48 chr4 159381900 159382169 -42946178 + L2 LINE L2 2572 2861 -453 258 234 125 0 chr4 159382446 159382510 -42945837 + L2 LINE L2 3234 3305 -8 26 30 0 0 chr4 159383469 159383502 -42944845 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4 159384494 159384522 -42943825 + AT_rich Low_complexity Low_complexity 1 28 0 241 271 160 28 chr4 159384751 159384895 -42943452 - L2 LINE L2 -7 3306 3144 189 254 16 63 chr4 159385758 159385821 -42942526 - L2 LINE L2 -540 2774 2715 301 290 110 0 chr4 159385827 159385927 -42942420 + L2 LINE L2 3191 3301 -12 1765 159 10 10 chr4 159386194 159386490 -42941857 + AluJb SINE Alu 1 296 -16 652 276 173 28 chr4 159386698 159387057 -42941290 + L2 LINE L2 2364 2774 -540 317 333 0 0 chr4 159387168 159387267 -42941080 + MIR3 SINE MIR 105 203 -5 1861 176 24 0 chr4 159387778 159388113 -42940234 + MER2 DNA MER2_type 1 343 -1 261 340 101 1 chr4 159388417 159388555 -42939792 + MIR3 SINE MIR 8 159 -49 1633 269 122 24 chr4 159389393 159390197 -42938150 + L1ME3A LINE L1 5268 6150 -20 212 293 43 52 chr4 159390373 159390489 -42937858 + L2 LINE L2 3150 3264 -8 308 338 62 14 chr4 159391584 159391729 -42936618 - MIR3 SINE MIR -21 187 36 248 290 54 21 chr4 159391856 159391949 -42936398 + MIR SINE MIR 1 96 -166 374 309 31 0 chr4 159391952 159392049 -42936298 - MER81 DNA DNA -2 112 13 261 269 40 86 chr4 159392049 159392224 -42936123 + MIR SINE MIR 96 262 0 225 298 12 24 chr4 159392233 159392317 -42936030 - L2 LINE L2 -1057 2257 2175 2239 100 3 3 chr4 159392773 159393072 -42935275 + AluSx SINE Alu 1 299 -13 478 239 99 124 chr4 159393844 159394087 -42934260 + L1MEd LINE L1 850 1068 -5061 1239 57 0 0 chr4 159394087 159394246 -42934101 + L1PA5 LINE L1 5994 6152 -2 478 239 99 124 chr4 159394246 159394482 -42933865 + L1MEd LINE L1 1068 1308 -4821 386 296 41 0 chr4 159394482 159394580 -42933767 + L2 LINE L2 1782 1883 -1431 943 281 94 10 chr4 159394597 159394989 -42933358 + LTR16A LTR ERVL 22 446 -4 3212 275 91 18 chr4 159394995 159396202 -42932145 + L2 LINE L2 1885 3199 -114 932 272 71 50 chr4 159396202 159396639 -42931708 + MLT1J2 LTR MaLR 5 450 0 3212 275 91 18 chr4 159396639 159396764 -42931583 + L2 LINE L2 3199 3313 0 521 333 68 37 chr4 159396765 159397086 -42931261 + HAL1 LINE L1 1433 1763 -744 2330 66 3 0 chr4 159397481 159397770 -42930577 + AluY SINE Alu 1 290 -21 231 286 0 19 chr4 159397777 159397882 -42930465 + A-rich Low_complexity Low_complexity 4 106 0 283 326 60 7 chr4 159397898 159398180 -42930167 + L1MEd LINE L1 2164 2460 -3669 225 0 0 0 chr4 159398246 159398271 -42930076 + (TG)n Simple_repeat Simple_repeat 2 26 0 320 276 19 57 chr4 159398277 159398382 -42929965 + L1MEd LINE L1 2655 2755 -3374 2672 175 64 41 chr4 159398460 159399998 -42928349 + L1MC1 LINE L1 4674 6233 -100 349 185 22 11 chr4 159400086 159400178 -42928169 + L1MC2 LINE L1 6252 6344 0 368 259 95 49 chr4 159400178 159400526 -42927821 + L1MEd LINE L1 2881 3244 -2885 189 0 0 0 chr4 159400526 159400547 -42927800 + (GGGAA)n Simple_repeat Simple_repeat 2 22 0 34 42 0 0 chr4 159401104 159401152 -42927195 + AT_rich Low_complexity Low_complexity 1 48 0 23 0 0 0 chr4 159401335 159401358 -42926989 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr4 159402646 159402673 -42925674 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr4 159403144 159403181 -42925166 + AT_rich Low_complexity Low_complexity 1 37 0 356 343 27 7 chr4 159404140 159404286 -42924061 - MIR SINE MIR -112 150 2 29 28 0 0 chr4 159404471 159404507 -42923840 + AT_rich Low_complexity Low_complexity 1 36 0 1973 168 299 19 chr4 159404596 159405211 -42923136 + LTR48 LTR ERV1 1 787 0 1788 155 77 168 chr4 159405911 159406674 -42921673 + LTR8A LTR ERV1 34 727 0 1193 209 43 50 chr4 159406682 159406983 -42921364 + MER101B LTR ERV1 1 299 -271 24 53 0 0 chr4 159407948 159407986 -42920361 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr4 159408658 159408682 -42919665 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 159409587 159409609 -42918738 + AT_rich Low_complexity Low_complexity 1 22 0 219 284 0 45 chr4 159409766 159409854 -42918493 + L2 LINE L2 2266 2349 -965 1116 226 58 28 chr4 159410059 159410453 -42917894 + L1M4 LINE L1 2253 2658 -3488 * 2787 235 99 28 chr4 159410452 159411502 -42916845 + L1ME4a LINE L1 3083 4207 -1939 522 262 132 34 chr4 159412576 159413053 -42915294 + L1ME4a LINE L1 5595 6118 -3 216 299 39 13 chr4 159413433 159413510 -42914837 + L3 LINE CR1 1161 1239 -338 2365 73 0 3 chr4 159413574 159413876 -42914471 + AluY SINE Alu 1 301 -10 201 388 0 0 chr4 159413980 159414065 -42914282 + L3 LINE CR1 1491 1575 -2 646 149 28 21 chr4 159414700 159414841 -42913506 - L1MB2 LINE L1 0 6171 6030 2168 115 3 15 chr4 159414938 159415277 -42913070 + LTR9B LTR ERV1 226 560 -84 207 0 0 0 chr4 159415546 159415569 -42912778 + (A)n Simple_repeat Simple_repeat 1 23 0 255 261 15 0 chr4 159416476 159416541 -42911806 + MER94 DNA DNA 15 80 -54 477 235 10 0 chr4 159416546 159416644 -42911703 + FRAM SINE Alu 55 153 -23 480 376 17 11 chr4 159416791 159416972 -42911375 - MIR SINE MIR -79 183 2 30 45 0 0 chr4 159417349 159417393 -42910954 + AT_rich Low_complexity Low_complexity 1 44 0 1406 215 9 62 chr4 159418169 159418494 -42909853 + L1MDa LINE L1 19 326 -6214 * 2513 219 139 19 chr4 159418481 159418600 -42909747 + L1M4 LINE L1 2828 2931 -3215 2413 66 0 0 chr4 159418600 159418902 -42909445 + AluY SINE Alu 1 302 -9 2513 219 139 19 chr4 159418902 159419716 -42908631 + L1M4 LINE L1 2931 3873 -2273 1247 241 78 7 chr4 159419711 159420134 -42908213 + L1M4 LINE L1 4577 5029 -1117 * 1033 306 48 20 chr4 159420322 159420777 -42907570 + Tigger8 DNA MER2_type 149 616 -50 25 65 0 0 chr4 159421021 159421067 -42907280 + AT_rich Low_complexity Low_complexity 1 46 0 3364 147 23 6 chr4 159421717 159422247 -42906100 + MER44D DNA MER2_type 12 605 0 947 179 82 39 chr4 159422917 159423124 -42905223 + AluJo SINE Alu 84 299 -13 2872 252 76 47 chr4 159423332 159424067 -42904280 + L2 LINE L2 1997 2709 -604 1969 253 52 33 chr4 159424067 159424647 -42903700 + MLT1E LTR MaLR 1 591 -2 2872 252 76 47 chr4 159424647 159424950 -42903397 + L2 LINE L2 2709 3064 -249 2183 52 4 0 chr4 159424950 159425221 -42903126 - AluY SINE Alu -39 272 1 2872 252 76 47 chr4 159425221 159425394 -42902953 + L2 LINE L2 3064 3230 -83 225 178 0 0 chr4 159425421 159425466 -42902881 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 918 265 122 32 chr4 159425620 159426208 -42902139 + HAL1b LINE L1 354 994 -354 868 207 66 30 chr4 159426218 159426416 -42901931 - MER58C DNA MER1_type -10 205 1 348 270 0 9 chr4 159426417 159426532 -42901815 + HAL1b LINE L1 1006 1119 -229 982 287 111 12 chr4 159426550 159426972 -42901375 + L1MDa LINE L1 362 825 -5896 * 6216 63 17 2 chr4 159426966 159427787 -42900560 + L1PA8A LINE L1 5272 6104 -27 180 0 0 0 chr4 159427821 159427841 -42900506 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 6789 143 23 9 chr4 159427844 159428557 -42899790 + L1MA4A LINE L1 4613 5315 -988 2322 99 0 6 chr4 159428557 159428869 -42899478 + AluSx SINE Alu 1 310 -2 6789 143 23 9 chr4 159428869 159429799 -42898548 + L1MA4A LINE L1 5315 6291 -12 540 172 0 0 chr4 159430045 159430132 -42898215 + AluJo SINE Alu 1 87 -225 1112 200 43 36 chr4 159430132 159430412 -42897935 + AluJo SINE Alu 2 283 -19 1549 202 9 9 chr4 159431800 159432137 -42896210 - L1MA4 LINE L1 -9 6291 5955 353 103 0 4 chr4 159432866 159432923 -42895424 + AluJo SINE Alu 84 134 -168 258 236 0 0 chr4 159435067 159435122 -42893225 + HAL1 LINE L1 833 887 -1620 237 258 0 0 chr4 159435206 159435272 -42893075 + HAL1 LINE L1 1067 1132 -1375 652 253 44 24 chr4 159435340 159435682 -42892665 + L1MDa LINE L1 1107 1418 -5112 10800 186 36 4 chr4 159435737 159437701 -42890646 + L1MA2 LINE L1 227 2253 -5312 11822 177 22 14 chr4 159437801 159440795 -42887552 + L1MA2 LINE L1 3090 6110 -1455 6718 89 15 8 chr4 159440835 159441810 -42886537 + L1MA2 LINE L1 6742 7723 0 1336 194 70 49 chr4 159442000 159442428 -42885919 + LTR56 LTR ERV1 9 445 0 676 299 27 23 chr4 159442701 159442922 -42885425 - MIR SINE MIR -35 227 6 3391 217 58 107 chr4 159443068 159444396 -42883951 - L1MCb LINE L1 -4984 1061 1 31 44 0 0 chr4 159445875 159445920 -42882427 + AT_rich Low_complexity Low_complexity 1 45 0 22 56 0 0 chr4 159446008 159446044 -42882303 + AT_rich Low_complexity Low_complexity 1 36 0 1567 203 3 6 chr4 159446047 159446363 -42881984 - L1MA4 LINE L1 -100 6200 5886 550 262 20 5 chr4 159446427 159446629 -42881718 - MER114 LTR ERV 0 648 444 5623 163 52 15 chr4 159446660 159448467 -42879880 + L1MA4 LINE L1 4364 6297 -3 1601 220 40 9 chr4 159448467 159448895 -42879452 - MER114 LTR ERV -207 441 1 938 92 15 0 chr4 159448908 159449039 -42879308 + AluSc SINE Alu 163 295 -14 216 0 0 0 chr4 159451096 159451120 -42877227 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 408 20 0 0 chr4 159451119 159451168 -42877179 + (CA)n Simple_repeat Simple_repeat 1 49 0 1068 254 22 43 chr4 159451981 159452304 -42876043 + HAL1 LINE L1 85 400 -2107 23702 30 0 0 chr4 159454699 159458335 -42870012 + L1PA3 LINE L1 2519 6155 0 274 333 11 0 chr4 159459934 159460021 -42868326 + MIR SINE MIR 34 121 -141 235 161 65 0 chr4 159460023 159460085 -42868262 + T-rich Low_complexity Low_complexity 2 67 0 182 286 19 105 chr4 159460367 159460472 -42867875 - MIR SINE MIR -83 179 84 21 0 0 0 chr4 159460705 159460726 -42867621 + AT_rich Low_complexity Low_complexity 1 21 0 1442 200 7 28 chr4 159460837 159461122 -42867225 - AluJo SINE Alu -30 282 4 343 212 87 60 chr4 159461200 159461384 -42866963 + L1ME4a LINE L1 5088 5276 -870 806 300 103 36 chr4 159461392 159462136 -42866211 + L1ME4a LINE L1 5317 6110 -11 22 0 0 0 chr4 159462155 159462177 -42866170 + AT_rich Low_complexity Low_complexity 1 22 0 37263 34 23 1 chr4 159463098 159468563 -42859784 + L1PA3 LINE L1 586 6171 0 2600 86 3 11 chr4 159468592 159468952 -42859395 + L1PA8A LINE L1 5769 6125 -6 223 165 55 33 chr4 159468970 159469061 -42859286 + (TAAA)n Simple_repeat Simple_repeat 2 94 0 402 306 153 21 chr4 159469090 159469332 -42859015 + L1MC/D LINE L1 5478 5751 -2057 446 256 32 0 chr4 159469357 159469482 -42858865 - L1MC4a LINE L1 -1879 5929 5801 1074 309 142 43 chr4 159469535 159470800 -42857547 + L2 LINE L2 1610 3005 -267 269 278 97 0 chr4 159471076 159471148 -42857199 + L2 LINE L2 3232 3310 -3 389 133 67 0 chr4 159471490 159471580 -42856767 - L1MA4 LINE L1 -2 6298 6203 185 333 72 62 chr4 159471854 159472049 -42856298 - L2 LINE L2 -1031 2283 2087 6862 194 41 53 chr4 159472196 159473629 -42854718 + L1MA4 LINE L1 7 1455 -4873 494 118 82 0 chr4 159473629 159473714 -42854633 + AluSg/x SINE Alu 204 295 -15 6862 194 41 53 chr4 159473714 159474017 -42854330 + L1MA4 LINE L1 1455 1760 -4568 198 0 0 0 chr4 159474017 159474039 -42854308 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 6862 194 41 53 chr4 159474039 159474611 -42853736 + L1MA4 LINE L1 1760 2327 -4001 274 50 28 26 chr4 159474618 159474664 -42853683 - MLT2A2 LTR ERVL 0 453 419 332 228 0 11 chr4 159474725 159474814 -42853533 + L1MC4 LINE L1 1995 6982 -1340 368 146 0 39 chr4 159474815 159474918 -42853429 + (TA)n Simple_repeat Simple_repeat 1 99 0 305 242 0 53 chr4 159474921 159475016 -42853331 - L1MC4 LINE L1 -1339 6703 6614 * 306 308 0 11 chr4 159474957 159475048 -42853299 + L1MC4 LINE L1 6614 6703 -1339 2899 71 20 13 chr4 159475059 159475455 -42852892 - MLT2A1 LTR ERVL -45 399 1 14182 183 28 17 chr4 159475455 159478546 -42849801 + L1MA4 LINE L1 2330 5480 -1002 219 69 0 0 chr4 159478546 159478575 -42849772 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 14182 183 28 17 chr4 159478575 159479589 -42848758 + L1MA4 LINE L1 5480 6482 0 516 280 157 34 chr4 159479612 159480019 -42848328 - LTR16A1 LTR ERVL 0 457 1 4376 172 54 19 chr4 159480088 159480771 -42847576 - L1MB8 LINE L1 0 6178 5444 207 0 0 0 chr4 159480771 159480794 -42847553 + (TGAG)n Simple_repeat Simple_repeat 1 23 0 4376 172 54 19 chr4 159480794 159481098 -42847249 - L1MB8 LINE L1 -734 5444 5152 222 235 0 0 chr4 159481099 159481150 -42847197 + T-rich Low_complexity Low_complexity 1 51 0 4916 38 0 0 chr4 159481150 159481733 -42846614 - L1PA3 LINE L1 0 6155 5573 537 115 52 20 chr4 159482000 159482256 -42846091 + (TA)n Simple_repeat Simple_repeat 1 264 0 271 141 31 0 chr4 159482325 159482389 -42845958 + (TA)n Simple_repeat Simple_repeat 2 67 0 256 243 77 24 chr4 159482411 159482580 -42845767 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 476 133 57 6 chr4 159482630 159482788 -42845559 + (TA)n Simple_repeat Simple_repeat 1 166 0 287 145 65 19 chr4 159482885 159483197 -42845150 + (TA)n Simple_repeat Simple_repeat 1 326 0 561 329 43 30 chr4 159484419 159484720 -42843627 + L2 LINE L2 2355 2659 -655 400 325 42 70 chr4 159484722 159485196 -42843151 + MLT1J LTR MaLR 2 462 -49 349 271 93 8 chr4 159485292 159485410 -42842937 + L2 LINE L2 2746 2873 -441 455 169 0 0 chr4 159485929 159486006 -42842341 + FLAM_C SINE Alu 36 112 -31 450 36 0 0 chr4 159486006 159486062 -42842285 + (TC)n Simple_repeat Simple_repeat 1 56 0 226 174 0 0 chr4 159486064 159486110 -42842237 + L1MC4 LINE L1 6658 6703 -1339 279 236 0 0 chr4 159486110 159486182 -42842165 + (TATATG)n Simple_repeat Simple_repeat 2 73 0 1227 216 24 17 chr4 159486183 159486474 -42841873 - L1ME1 LINE L1 -124 6042 5750 2796 244 61 22 chr4 159486829 159487702 -42840645 - L1ME1 LINE L1 -6 6229 5323 1752 205 54 34 chr4 159487705 159488115 -42840232 - MSTB LTR MaLR -1 425 8 2326 250 120 28 chr4 159488127 159489360 -42838987 - L1ME1 LINE L1 -895 5320 3897 441 147 15 0 chr4 159489359 159489427 -42838920 - L1MEc LINE L1 -6222 174 106 * 1068 216 36 12 chr4 159489631 159489960 -42838387 - L1ME1 LINE L1 -5226 1170 834 317 148 19 0 chr4 159489962 159490016 -42838331 - L1ME1 LINE L1 -5691 705 651 1115 286 18 50 chr4 159490025 159490409 -42837938 - L1ME1 LINE L1 -5919 477 106 229 239 0 0 chr4 159492688 159492734 -42835613 + L2 LINE L2 3251 3296 -17 257 301 70 70 chr4 159493171 159493430 -42834917 + L2 LINE L2 2573 2831 -483 204 330 134 42 chr4 159494112 159494351 -42833996 - L2 LINE L2 -696 2618 2358 39 50 0 0 chr4 159494410 159494470 -42833877 + AT_rich Low_complexity Low_complexity 1 60 0 2105 108 13 16 chr4 159494789 159495273 -42833074 + AluSx SINE Alu 1 483 0 192 77 0 0 chr4 159495282 159495308 -42833039 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 294 29 0 0 chr4 159496610 159496645 -42831702 + (TA)n Simple_repeat Simple_repeat 1 35 0 625 228 136 6 chr4 159497104 159497266 -42831081 + MIR SINE MIR 70 252 -10 185 277 0 0 chr4 159497282 159497329 -42831018 + L3 LINE CR1 1530 1576 -1 308 362 93 67 chr4 159497844 159498643 -42829704 - L2 LINE L2 0 3272 2434 508 323 183 26 chr4 159500679 159501672 -42826675 + L2 LINE L2 1745 2893 -421 2361 115 19 25 chr4 159502534 159502900 -42825447 - THE1B LTR MaLR 0 364 1 2535 144 36 13 chr4 159503669 159504142 -42824205 + MER31A LTR ERV1 1 484 -1 181 229 94 83 chr4 159504326 159504422 -42823925 - MIR3 SINE MIR -3 205 109 442 327 123 5 chr4 159504438 159504658 -42823689 - MIR SINE MIR -10 252 7 5505 137 9 24 chr4 159504820 159505737 -42822610 - MER4D LTR ERV1 0 903 1 2133 138 0 3 chr4 159506153 159506465 -42821882 - AluSx SINE Alu -1 311 1 271 254 16 0 chr4 159506548 159506611 -42821736 - L2 LINE L2 -6 3307 3244 2215 107 10 0 chr4 159507147 159507447 -42820900 + AluSx SINE Alu 1 303 -9 1833 115 0 97 chr4 159508063 159508403 -42819944 + AluSx SINE Alu 1 307 -5 24 0 0 0 chr4 159508408 159508432 -42819915 + AT_rich Low_complexity Low_complexity 1 24 0 1311 270 11 57 chr4 159509152 159509611 -42818736 - L2 LINE L2 -5 3308 2871 384 77 0 0 chr4 159509856 159509908 -42818439 + (CA)n Simple_repeat Simple_repeat 1 52 0 338 319 0 0 chr4 159509911 159510002 -42818345 + L1MC4 LINE L1 6614 6704 -1338 915 49 0 25 chr4 159510007 159510129 -42818218 - L1PA5 LINE L1 -18 6136 6018 4224 45 0 2 chr4 159510129 159510658 -42817689 + L1P LINE L1 3662 4189 -1957 1674 171 90 35 chr4 159510961 159511307 -42817040 + MLT1A1 LTR MaLR 1 365 0 493 235 10 0 chr4 159512161 159512263 -42816084 - MIR3 SINE MIR -23 185 83 24 77 0 0 chr4 159512428 159512480 -42815867 + AT_rich Low_complexity Low_complexity 1 52 0 3252 255 72 6 chr4 159512848 159513978 -42814369 - L1M4 LINE L1 -2326 3820 2617 975 202 5 0 chr4 159515068 159515261 -42813086 + L1PB3 LINE L1 5957 6150 -4 235 231 192 0 chr4 159515307 159515385 -42812962 + MIR SINE MIR 60 152 -110 26 50 0 0 chr4 159516241 159516281 -42812066 + AT_rich Low_complexity Low_complexity 1 40 0 786 168 8 0 chr4 159517202 159517333 -42811014 + FLAM_C SINE Alu 1 132 -1 1690 144 24 34 chr4 159517525 159517816 -42810531 + AluJo SINE Alu 5 292 -20 2227 113 0 0 chr4 159517905 159518206 -42810141 + AluSg1 SINE Alu 1 301 -8 339 337 41 0 chr4 159520080 159520178 -42808169 + MER91C DNA MER1_type 36 137 -3 403 291 122 5 chr4 159520359 159520548 -42807799 + MIR SINE MIR 52 262 0 724 280 57 77 chr4 159520861 159521629 -42806718 + L1MC/D LINE L1 3516 4268 -1878 653 122 0 0 chr4 159521646 159521736 -42806611 + 5S rRNA rRNA 1 90 -31 544 286 44 27 chr4 159521839 159522244 -42806103 + L1MC/D LINE L1 4367 4778 -1368 30 45 0 0 chr4 159522326 159522370 -42805977 + AT_rich Low_complexity Low_complexity 1 44 0 344 283 115 35 chr4 159522413 159522639 -42805708 + L1MC/D LINE L1 5010 5253 -893 1182 281 71 12 chr4 159522643 159523134 -42805213 + L1MC/D LINE L1 5259 5778 -2030 23 0 0 0 chr4 159523834 159523857 -42804490 + AT_rich Low_complexity Low_complexity 1 23 0 294 346 77 34 chr4 159524404 159524638 -42803709 + L3b LINE CR1 1251 1494 -89 261 222 65 16 chr4 159525420 159525509 -42802838 + MER20B DNA MER1_type 105 199 -20 699 316 74 34 chr4 159525515 159525933 -42802414 + LTR16A LTR ERVL 16 450 0 192 247 59 35 chr4 159525954 159526039 -42802308 - MIR3 SINE MIR -49 159 73 238 351 78 22 chr4 159528258 159528489 -42799858 + L2 LINE L2 2729 2972 -342 245 214 12 119 chr4 159529301 159529328 -42799019 + MIR3 SINE MIR 134 162 -46 916 207 13 93 chr4 159529328 159529565 -42798782 + MER20 DNA MER1_type 1 218 -1 245 214 12 119 chr4 159529565 159529621 -42798726 + MIR3 SINE MIR 162 208 0 223 340 31 21 chr4 159529928 159530025 -42798322 + MIR SINE MIR 40 137 -71 15207 119 29 6 chr4 159531062 159533423 -42794924 - Tigger1 DNA MER2_type -2 2416 1 254 360 111 0 chr4 159533427 159533580 -42794767 + MIR SINE MIR 92 261 -1 862 189 15 60 chr4 159533619 159533747 -42794600 + MER58A DNA MER1_type 1 118 -2302 2067 151 32 22 chr4 159533747 159534118 -42794229 + THE1C LTR MaLR 1 375 0 862 189 15 60 chr4 159534118 159534190 -42794157 + MER58A DNA MER1_type 118 192 -32 652 237 68 23 chr4 159534508 159534685 -42793662 + MIR SINE MIR 14 198 -64 2190 214 77 11 chr4 159536341 159536888 -42791459 - MER119 DNA MER1_type 0 583 1 1707 112 9 0 chr4 159536918 159537151 -42791196 + AluSx SINE Alu 64 298 -14 484 116 23 0 chr4 159537151 159537237 -42791110 + GA-rich Low_complexity Low_complexity 1 88 0 14619 132 19 26 chr4 159538241 159540664 -42787683 - Tigger1 DNA MER2_type 0 2418 13 339 25 0 0 chr4 159541101 159541141 -42787206 + (CA)n Simple_repeat Simple_repeat 2 41 0 223 279 0 44 chr4 159541213 159541281 -42787066 + MIR SINE MIR 198 262 0 26 0 0 0 chr4 159541284 159541310 -42787037 + AT_rich Low_complexity Low_complexity 1 26 0 594 181 29 14 chr4 159542267 159542405 -42785942 - Charlie1 DNA MER1_type 0 2761 2622 1672 188 88 27 chr4 159542541 159542914 -42785433 + MSTD LTR MaLR 1 396 0 647 299 100 15 chr4 159543370 159543631 -42784716 - MER115 DNA AcHobo -371 322 40 273 29 0 0 chr4 159545604 159545638 -42782709 + (TA)n Simple_repeat Simple_repeat 1 34 0 1449 172 254 68 chr4 159545739 159546267 -42782080 - MER51A LTR ERV1 -8 626 1 370 276 57 37 chr4 159547496 159547742 -42780605 + L1M4 LINE L1 4801 5051 -1095 189 0 0 0 chr4 159548222 159548243 -42780104 + (T)n Simple_repeat Simple_repeat 1 21 0 1670 72 5 0 chr4 159548280 159548502 -42779845 + L1P LINE L1 1 223 -5923 1956 64 0 11 chr4 159548780 159549044 -42779303 - L1PA5 LINE L1 0 6154 5894 3117 190 17 14 chr4 159550861 159551503 -42776844 - L1MB4 LINE L1 -1 6179 5536 1163 184 26 9 chr4 159552373 159552601 -42775746 + MER96B DNA MER1_type? 3 234 -183 42751 34 21 2 chr4 159553083 159559117 -42769230 + L1PA3 LINE L1 1 6155 0 266 0 29 0 chr4 159559128 159559162 -42769185 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 180 313 84 36 chr4 159559174 159559257 -42769090 - MIR SINE MIR -87 121 35 507 191 11 0 chr4 159559793 159559882 -42768465 - Tigger5 DNA MER2_type 0 2323 2234 2123 104 7 0 chr4 159560237 159560526 -42767821 - AluSx SINE Alu -21 291 1 4325 132 49 42 chr4 159561282 159562062 -42766285 - LTR1 LTR ERV1 0 785 1 1962 125 0 7 chr4 159562373 159562654 -42765693 + AluSq SINE Alu 26 304 -9 749 175 7 7 chr4 159562951 159563088 -42765259 + MLT1A1 LTR MaLR 1 137 -228 1783 145 86 7 chr4 159563089 159563392 -42764955 + MSTB LTR MaLR 1 327 -99 1651 121 8 4 chr4 159563402 159563650 -42764697 - L1PA12 LINE L1 -15 6153 5905 2541 87 9 0 chr4 159563659 159564006 -42764341 - L1PA12 LINE L1 -362 5806 5457 779 95 0 0 chr4 159564007 159564112 -42764235 + MSTB LTR MaLR 322 426 -6 885 219 58 18 chr4 159564117 159564341 -42764006 + MLT1A1 LTR MaLR 133 365 0 221 57 29 0 chr4 159565445 159565480 -42762867 + (TG)n Simple_repeat Simple_repeat 1 36 0 617 310 52 9 chr4 159565510 159565739 -42762608 - Charlie8 DNA MER1_type -2139 278 40 183 42 0 0 chr4 159566043 159566067 -42762280 + (TC)n Simple_repeat Simple_repeat 1 24 0 272 248 56 64 chr4 159566152 159566277 -42762070 - MLT1K LTR MaLR -292 296 173 1109 332 156 33 chr4 159566734 159567124 -42761223 + L3 LINE CR1 534 875 -702 2011 126 3 0 chr4 159567124 159567410 -42760937 - AluSx SINE Alu -25 287 1 1109 332 156 33 chr4 159567410 159567929 -42760418 + L3 LINE CR1 875 1555 -22 357 318 30 45 chr4 159568317 159568515 -42759832 + MIR SINE MIR 22 216 -46 24 0 0 0 chr4 159568999 159569023 -42759324 + AT_rich Low_complexity Low_complexity 1 24 0 457 289 32 32 chr4 159569447 159569637 -42758710 - MIR3 SINE MIR -12 196 7 458 275 64 12 chr4 159569850 159570021 -42758326 + MIR SINE MIR 13 192 -70 3087 178 7 4 chr4 159570691 159571235 -42757112 + MER44D DNA MER2_type 1 601 -4 714 120 0 9 chr4 159571935 159572043 -42756304 + U6 snRNA snRNA 1 107 0 4562 179 23 39 chr4 159572944 159574689 -42753658 - L1MB1 LINE L1 -7 6161 4446 1089 189 40 65 chr4 159574689 159574964 -42753383 + MLT1A1 LTR MaLR 1 268 -97 290 270 0 0 chr4 159574990 159575053 -42753294 - MLT-int LTR MaLR -463 1272 1210 371 119 17 0 chr4 159575055 159575114 -42753233 + MSTB2 LTR MaLR 398 457 0 4527 184 10 64 chr4 159575149 159575754 -42752593 + L1 LINE L1 3287 3808 -2338 3514 33 0 5 chr4 159575754 159576172 -42752175 + L1PA4 LINE L1 5734 6154 -1 4527 184 10 64 chr4 159576172 159576659 -42751688 + L1 LINE L1 3808 4320 -1826 230 83 0 0 chr4 159576693 159576729 -42751618 + L1 LINE L1 4286 4321 -1825 5171 112 5 4 chr4 159576732 159577491 -42750856 + L1PA13 LINE L1 5398 6157 -6 2064 112 0 0 chr4 159577493 159577792 -42750555 + AluSg SINE Alu 17 310 0 299 194 41 31 chr4 159577796 159577894 -42750453 + L1 LINE L1 4317 4415 -1731 217 320 26 13 chr4 159577899 159577977 -42750370 - MIR SINE MIR -121 141 63 404 288 153 14 chr4 159579374 159579589 -42748758 - HAL1b LINE L1 -613 735 491 1938 207 87 22 chr4 159579733 159580072 -42748275 + MER21B LTR ERV1 361 739 -124 180 0 0 0 chr4 159580072 159580092 -42748255 + (AATTG)n Simple_repeat Simple_repeat 2 21 0 1938 207 87 22 chr4 159580092 159580210 -42748137 + MER21B LTR ERV1 739 848 -15 569 267 47 31 chr4 159580225 159580483 -42747864 - HAL1b LINE L1 -851 497 236 7506 33 0 0 chr4 159580818 159582445 -42745902 - L1PA4 LINE L1 0 6155 4530 253 180 16 16 chr4 159683975 159684036 -42644311 + GA-rich Low_complexity Low_complexity 5 65 0 2477 79 0 3 chr4 159685261 159685564 -42642783 - AluY SINE Alu -9 302 1 391 94 0 0 chr4 159685977 159686030 -42642317 - MADE1 DNA Mariner -27 53 1 462 231 86 0 chr4 159686415 159686532 -42641815 + MIR SINE MIR 50 176 -86 2150 132 14 3 chr4 159686862 159687211 -42641136 + MER39B LTR ERV1 1 353 -300 1999 138 26 0 chr4 159687324 159687629 -42640718 - AluSq SINE Alu 0 313 1 345 291 73 13 chr4 159687690 159687841 -42640506 - MIR SINE MIR -6 256 97 292 313 143 26 chr4 159687893 159688165 -42640182 - L2 LINE L2 -461 2853 2550 894 149 7 32 chr4 159688651 159688805 -42639542 - THE1C LTR MaLR -225 150 1 2118 105 39 0 chr4 159688838 159689123 -42639224 + AluSx SINE Alu 2 297 -15 200 163 61 61 chr4 159689958 159690007 -42638340 + L2 LINE L2 3224 3272 0 839 223 14 0 chr4 159690141 159690289 -42638058 + FRAM SINE Alu 1 150 -16 315 0 0 0 chr4 159690289 159690324 -42638023 + (TG)n Simple_repeat Simple_repeat 2 36 0 868 238 6 0 chr4 159690563 159690731 -42637616 - FRAM SINE Alu -14 162 1 333 229 0 36 chr4 159690771 159690854 -42637493 + L2 LINE L2 2917 2996 -317 446 230 11 0 chr4 159690966 159691053 -42637294 + Tigger3(Golem) DNA MER2_type 2940 3027 -2 224 333 52 10 chr4 159691289 159691385 -42636962 - MIR3 SINE MIR -1 207 108 291 47 139 0 chr4 159691773 159691902 -42636445 + (TA)n Simple_repeat Simple_repeat 2 148 0 240 217 14 58 chr4 159692026 159692095 -42636252 - MIR SINE MIR -1 261 196 346 253 77 66 chr4 159692169 159692351 -42635996 + MIR SINE MIR 79 262 0 287 308 110 39 chr4 159692992 159693174 -42635173 - MIR SINE MIR -62 200 6 2107 122 16 16 chr4 159693268 159693580 -42634767 + AluSx SINE Alu 1 312 0 1835 88 4 4 chr4 159693868 159694107 -42634240 + AluSq SINE Alu 1 239 -74 771 113 0 0 chr4 159694107 159694213 -42634134 + AluSp/q SINE Alu 200 305 -8 977 160 12 30 chr4 159695227 159695396 -42632951 + FAM SINE Alu 1 166 -9 2058 94 4 0 chr4 159696220 159696485 -42631862 - AluSx SINE Alu -46 266 1 1234 192 138 7 chr4 159697279 159697570 -42630777 - L1MC1 LINE L1 0 6333 6005 1160 208 85 90 chr4 159699575 159699998 -42628349 + MER31B LTR ERV1 46 466 0 180 299 60 15 chr4 159701183 159701250 -42627097 - MIR3 SINE MIR -36 172 103 2166 122 0 0 chr4 159702881 159703176 -42625171 - AluSx SINE Alu -17 295 1 2441 66 0 13 chr4 159703572 159703876 -42624471 + AluY SINE Alu 1 300 -11 23 0 0 0 chr4 159704145 159704168 -42624179 + AT_rich Low_complexity Low_complexity 1 23 0 397 236 138 0 chr4 159704447 159704570 -42623777 + MIR SINE MIR 63 202 -60 268 280 100 0 chr4 159704743 159704843 -42623504 - L2 LINE L2 -5 3267 3158 1219 132 36 114 chr4 159704872 159705152 -42623195 + AluJb SINE Alu 21 278 -34 842 93 16 0 chr4 159705152 159705281 -42623066 + (TAGA)n Simple_repeat Simple_repeat 3 133 0 2291 163 34 14 chr4 159705345 159705781 -42622566 + L1MB8 LINE L1 5734 6178 0 1513 172 7 15 chr4 159705792 159705877 -42622470 + AluJo SINE Alu 31 115 -197 246 62 0 0 chr4 159705877 159705909 -42622438 + (CCTA)n Simple_repeat Simple_repeat 4 35 0 1513 172 7 15 chr4 159705909 159706096 -42622251 + AluJo SINE Alu 115 301 -11 556 180 116 99 chr4 159707071 159707151 -42621196 - MER69A DNA AcHobo -2351 175 98 2304 111 0 3 chr4 159707151 159707448 -42620899 + AluSc SINE Alu 1 296 -13 556 180 116 99 chr4 159707448 159707539 -42620808 - MER69A DNA AcHobo -2428 98 1 257 197 449 0 chr4 159707586 159707713 -42620634 - MIR SINE MIR -17 245 62 186 133 0 0 chr4 159708376 159708406 -42619941 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 1171 122 51 33 chr4 159708792 159709006 -42619341 + MER39 LTR ERV1 490 707 0 1688 177 3 29 chr4 159709762 159710073 -42618274 - AluJb SINE Alu -9 303 1 1903 161 3 3 chr4 159711450 159711760 -42616587 - AluJb SINE Alu -2 310 1 353 383 103 16 chr4 159711777 159712020 -42616327 - L2 LINE L2 -2 3270 3007 203 200 133 0 chr4 159712168 159712213 -42616134 - MIR3 SINE MIR -14 194 144 2602 68 0 0 chr4 159712316 159712627 -42615720 - AluY SINE Alu 0 311 1 1123 86 13 0 chr4 159712764 159712915 -42615432 - THE1C LTR MaLR 0 375 223 220 262 0 0 chr4 159713096 159713138 -42615209 + polypurine Low_complexity Low_complexity 2 43 0 1962 134 10 0 chr4 159714820 159715110 -42613237 + AluJo SINE Alu 1 293 -19 360 97 0 0 chr4 159716666 159716728 -42611619 + (GGA)n Simple_repeat Simple_repeat 2 63 0 180 111 0 0 chr4 159717842 159717869 -42610478 + (GA)n Simple_repeat Simple_repeat 1 27 0 2041 125 0 3 chr4 159718382 159718670 -42609677 + AluSx SINE Alu 5 291 -21 203 398 0 10 chr4 159719609 159719707 -42608640 - MIR SINE MIR -146 116 20 529 342 182 27 chr4 159720015 159720204 -42608143 + L3 LINE CR1 413 571 -1006 1178 193 83 33 chr4 159720204 159720505 -42607842 - MER33 DNA MER1_type -4 320 5 529 342 182 27 chr4 159720505 159721190 -42607157 + L3 LINE CR1 571 1422 -155 213 298 128 0 chr4 159721247 159721341 -42607006 - MIR SINE MIR -67 195 90 2194 82 31 3 chr4 159721506 159721800 -42606547 + AluSp SINE Alu 1 302 -11 42 0 0 0 chr4 159724298 159724340 -42604007 + AT_rich Low_complexity Low_complexity 1 42 0 2139 107 0 3 chr4 159724340 159724629 -42603718 - AluSx SINE Alu -24 288 1 232 156 89 0 chr4 159726091 159726136 -42602211 + LTR15 LTR ERV1 157 205 -288 21 36 0 0 chr4 159726327 159726355 -42601992 + AT_rich Low_complexity Low_complexity 1 28 0 7039 215 84 16 chr4 159727333 159728516 -42599831 + L1MB4 LINE L1 2236 3338 -3044 2312 111 0 0 chr4 159728516 159728814 -42599533 + AluSx SINE Alu 1 298 -14 7039 215 84 16 chr4 159728814 159729856 -42598491 + L1MB4 LINE L1 3338 4609 -1773 462 91 0 0 chr4 159729856 159729911 -42598436 + Alu SINE Alu 220 274 -38 3229 180 119 27 chr4 159729921 159730401 -42597946 + L1MB4 LINE L1 4910 5344 -1072 1697 178 16 13 chr4 159730401 159730704 -42597643 + AluJo SINE Alu 1 304 -8 3229 180 119 27 chr4 159730704 159731424 -42596923 + L1MB4 LINE L1 5344 6410 -6 32645 91 24 45 chr4 159731651 159738167 -42590180 + L1PA7 LINE L1 4 6468 -1 959 145 0 0 chr4 159738409 159738540 -42589807 - FLAM_C SINE Alu -2 131 1 719 199 235 55 chr4 159739439 159739562 -42588785 + MER58B DNA MER1_type 20 120 -2300 2098 120 3 20 chr4 159739562 159739862 -42588485 - AluSx SINE Alu -17 295 1 719 199 235 55 chr4 159739862 159740010 -42588337 + MER58B DNA MER1_type 120 340 -1 5361 171 67 17 chr4 159744420 159745320 -42583027 + Tigger6a DNA MER2_type 1 960 -637 1653 172 36 4 chr4 159745320 159745599 -42582748 - AluJb SINE Alu -24 288 1 5361 171 67 17 chr4 159745599 159745730 -42582617 + Tigger6a DNA MER2_type 960 1083 0 1068 197 30 0 chr4 159746412 159746610 -42581737 + MER3 DNA MER1_type 1 204 -5 189 0 0 0 chr4 159747583 159747604 -42580743 + (TTGG)n Simple_repeat Simple_repeat 2 22 0 726 86 0 0 chr4 159748765 159748858 -42579489 - AluY SINE Alu -12 299 207 349 287 77 7 chr4 159750948 159751091 -42577256 - MIR3 SINE MIR -9 199 47 945 141 26 0 chr4 159752287 159752443 -42575904 + L1MB3 LINE L1 6014 6173 -10 2306 104 0 7 chr4 159753304 159753603 -42574744 + AluSx SINE Alu 1 297 -15 1928 32 0 0 chr4 159753652 159753871 -42574476 - L1PA5 LINE L1 -421 5733 5515 3572 36 5 10 chr4 159753871 159754285 -42574062 + L1PA5 LINE L1 5742 6154 0 1631 171 16 23 chr4 159755419 159755728 -42572619 + AluJo SINE Alu 4 310 -2 952 161 124 10 chr4 159755732 159755925 -42572422 + AluJo SINE Alu 86 300 -12 268 218 0 0 chr4 159757150 159757205 -42571142 + MLT1H LTR MaLR 491 545 -4 1882 194 22 17 chr4 159757677 159758037 -42570310 + MLT1A1 LTR MaLR 1 362 -3 356 306 0 0 chr4 159758054 159758139 -42570208 + L2 LINE L2 3228 3312 -1 1471 13 0 0 chr4 159758888 159759046 -42569301 - L1PA2 LINE L1 0 6155 5998 1707 166 3 17 chr4 159760038 159760334 -42568013 - AluJo SINE Alu -19 293 2 498 288 126 0 chr4 159760780 159760978 -42567369 + MIR SINE MIR 20 242 -20 22 35 0 0 chr4 159761002 159761031 -42567316 + AT_rich Low_complexity Low_complexity 1 29 0 559 296 87 14 chr4 159761129 159761406 -42566941 + L1ME4a LINE L1 5558 5854 -267 398 221 66 8 chr4 159761449 159761571 -42566776 + L1ME4a LINE L1 5982 6110 -11 258 289 78 11 chr4 159763198 159763288 -42565059 - MIR SINE MIR -109 153 58 197 303 0 53 chr4 159766019 159766095 -42562252 + MIR3 SINE MIR 111 182 -26 1811 154 180 11 chr4 159766259 159766615 -42561732 + MSTA LTR MaLR 1 416 -12 339 272 111 116 chr4 159770254 159770312 -42558035 + L2 LINE L2 2888 2945 -327 1786 140 48 0 chr4 159770312 159770583 -42557764 - AluJb SINE Alu -18 294 11 339 272 111 116 chr4 159770583 159770596 -42557751 + L2 LINE L2 2945 2957 -315 2865 13 0 0 chr4 159770596 159770906 -42557441 - AluYb8 SINE Alu -8 310 1 339 272 111 116 chr4 159770906 159771204 -42557143 + L2 LINE L2 2957 3256 -16 774 252 108 33 chr4 159771366 159771786 -42556561 + MLT1C LTR MaLR 13 466 -1 201 355 14 29 chr4 159772074 159772212 -42556135 + L2 LINE L2 2917 3052 -220 262 220 147 46 chr4 159772482 159772591 -42555756 + MIR SINE MIR 24 143 -119 480 320 150 0 chr4 159773645 159773845 -42554502 - MIR SINE MIR -2 260 31 1150 181 130 20 chr4 159773845 159774137 -42554210 - MER33 DNA MER1_type 0 324 1 1900 244 78 14 chr4 159774324 159774811 -42553536 + LTR40a LTR ERVL 1 518 -1 996 132 0 0 chr4 159775228 159775364 -42552983 - AluJo SINE Alu -176 136 1 2054 110 3 3 chr4 159775992 159776307 -42552040 - AluSx SINE Alu 0 315 1 21 0 0 0 chr4 159776328 159776349 -42551998 + AT_rich Low_complexity Low_complexity 1 21 0 1736 130 6 81 chr4 159776887 159777209 -42551138 - AluSx SINE Alu -14 298 1 296 213 16 0 chr4 159777287 159777348 -42550999 + MIR SINE MIR 168 229 -33 1218 208 140 26 chr4 159777515 159777821 -42550526 + AluJo SINE Alu 2 302 0 213 211 0 0 chr4 159778429 159778467 -42549880 + A-rich Low_complexity Low_complexity 5 42 0 2372 154 19 76 chr4 159779124 159779611 -42548736 + MER21A LTR ERV1 466 924 -7 2275 100 27 0 chr4 159779760 159780061 -42548286 - AluSx SINE Alu -2 310 2 832 241 52 0 chr4 159780062 159780253 -42548094 - MER58A DNA MER1_type -4 220 20 486 233 143 8 chr4 159780381 159780514 -42547833 + MER5B DNA MER1_type 23 173 -5 451 240 93 8 chr4 159780715 159780844 -42547503 - MIR SINE MIR -95 167 28 22 0 0 0 chr4 159781122 159781144 -42547203 + AT_rich Low_complexity Low_complexity 1 22 0 182 264 14 42 chr4 159782062 159782134 -42546213 - MIR SINE MIR -7 255 186 2279 208 33 28 chr4 159783232 159783406 -42544941 + MLT1F LTR MaLR 1 172 -370 198 0 0 0 chr4 159783406 159783428 -42544919 + (TC)n Simple_repeat Simple_repeat 2 23 0 2279 208 33 28 chr4 159783428 159783762 -42544585 + MLT1F LTR MaLR 172 512 -30 2247 122 0 3 chr4 159783764 159784076 -42544271 - AluSx SINE Alu -1 311 1 936 112 30 0 chr4 159784085 159784219 -42544128 - AluSg/x SINE Alu -12 298 161 372 248 174 8 chr4 159784520 159784641 -42543706 - MIR SINE MIR -88 174 34 2169 109 0 10 chr4 159784646 159784948 -42543399 - AluSg SINE Alu -11 299 1 319 93 0 0 chr4 159784993 159785036 -42543311 - U7 snRNA snRNA -20 43 1 302 163 0 0 chr4 159786188 159786231 -42542116 + AluSc SINE Alu 167 209 -90 312 116 0 0 chr4 159789375 159789418 -42538929 - U2 snRNA snRNA -145 43 1 24 0 0 0 chr4 159792398 159792422 -42535925 + AT_rich Low_complexity Low_complexity 1 24 0 2387 74 3 10 chr4 159793461 159793773 -42534574 - AluY SINE Alu 0 311 2 30 69 0 0 chr4 159794165 159794223 -42534124 + AT_rich Low_complexity Low_complexity 1 58 0 701 267 98 35 chr4 159795329 159795614 -42532733 - L2 LINE L2 -5 3308 3006 496 329 7 0 chr4 159796754 159796894 -42531453 + MIR SINE MIR 48 188 -74 558 211 86 29 chr4 159797071 159797246 -42531101 + L1ME1 LINE L1 5889 6073 -93 876 161 0 123 chr4 159797409 159797620 -42530727 + AluJo SINE Alu 71 255 -57 6646 126 50 47 chr4 159798105 159799332 -42529015 + Tigger3b DNA MER2_type 1 1231 0 21 57 0 0 chr4 159799364 159799399 -42528948 + AT_rich Low_complexity Low_complexity 1 35 0 1016 249 71 3 chr4 159802177 159802474 -42525873 + Charlie2 DNA MER1_type 2 318 -2544 1702 189 167 107 chr4 159802486 159803431 -42524916 + Charlie2 DNA MER1_type 1861 2862 0 574 242 192 6 chr4 159803439 159803580 -42524767 + MER58A DNA MER1_type 1 185 -2235 1877 139 55 9 chr4 159803580 159803730 -42524617 - MER46B DNA MER2_type -2495 236 185 245 29 29 0 chr4 159803730 159803764 -42524583 + (TA)n Simple_repeat Simple_repeat 1 35 0 1877 139 55 9 chr4 159803764 159803957 -42524390 - MER46B DNA MER2_type -2546 185 2 574 242 192 6 chr4 159803957 159803997 -42524350 + MER58A DNA MER1_type 185 216 -8 21 0 0 0 chr4 159806125 159806146 -42522201 + AT_rich Low_complexity Low_complexity 1 21 0 3310 106 34 6 chr4 159806568 159807066 -42521281 - MER41E LTR ERV1 0 512 1 706 244 55 6 chr4 159807630 159807749 -42520598 + MIR SINE MIR 30 158 -104 416 136 12 25 chr4 159807749 159807830 -42520517 + MER116 DNA Mariner 1 80 0 706 244 55 6 chr4 159807830 159807902 -42520445 + MIR SINE MIR 158 225 -37 316 299 110 19 chr4 159807877 159808031 -42520316 - MIR3 SINE MIR -4 204 37 * 22 0 0 0 chr4 159808342 159808364 -42519983 + AT_rich Low_complexity Low_complexity 1 22 0 310 273 93 31 chr4 159810068 159810229 -42518118 + MIR3 SINE MIR 37 207 -1 1526 123 9 9 chr4 159810389 159810617 -42517730 + AluJo SINE Alu 71 298 -14 221 267 17 0 chr4 159811211 159811271 -42517076 + GA-rich Low_complexity Low_complexity 2 62 0 21 0 0 0 chr4 159811406 159811427 -42516920 + AT_rich Low_complexity Low_complexity 1 21 0 312 48 0 0 chr4 159812778 159812820 -42515527 + (TG)n Simple_repeat Simple_repeat 1 42 0 250 356 8 8 chr4 159814305 159814437 -42513910 + GA-rich Low_complexity Low_complexity 3 134 0 711 214 63 29 chr4 159814784 159814990 -42513357 + MLT1H LTR MaLR 100 312 -237 368 137 55 27 chr4 159815060 159815133 -42513214 + MLT1H LTR MaLR 455 529 -20 321 256 11 44 chr4 159816450 159816540 -42511807 + L2 LINE L2 3165 3251 -62 1370 172 64 4 chr4 159816951 159817201 -42511146 + AluJo SINE Alu 5 269 -43 755 238 64 43 chr4 159817348 159817583 -42510764 + MIR SINE MIR 23 262 0 1788 150 72 19 chr4 159820321 159820641 -42507706 - MER1B DNA MER1_type 0 337 1 188 250 0 0 chr4 159820660 159820700 -42507647 + MIR SINE MIR 196 235 -27 * 203 222 0 22 chr4 159820699 159820744 -42507603 - L2 LINE L2 -4 3268 3225 1065 235 40 0 chr4 159821702 159821953 -42506394 + MIR SINE MIR 2 262 0 232 213 0 66 chr4 159821958 159822019 -42506328 + MIR SINE MIR 196 252 -10 294 324 84 84 chr4 159822164 159822439 -42505908 + L2 LINE L2 2995 3269 -3 208 233 27 0 chr4 159824369 159824442 -42503905 + (TA)n Simple_repeat Simple_repeat 1 75 0 2147 121 7 0 chr4 159824714 159825012 -42503335 - AluSx SINE Alu -12 300 1 277 230 60 20 chr4 159825012 159825112 -42503235 + L1ME4a LINE L1 5632 5735 -386 307 262 117 21 chr4 159825134 159825279 -42503068 + L1ME4a LINE L1 5791 5949 -172 237 156 0 0 chr4 159825279 159825324 -42503023 + LTR66 LTR ERVL 394 438 -172 236 156 0 0 chr4 159825348 159825393 -42502954 - LTR66 LTR ERVL -172 438 394 233 125 83 0 chr4 159825404 159825452 -42502895 - L1MC4 LINE L1 -1339 6703 6652 302 186 0 0 chr4 159825452 159825511 -42502836 + MIR SINE MIR 204 262 0 203 220 0 68 chr4 159825516 159825575 -42502772 + MIR SINE MIR 196 250 -12 1808 169 7 3 chr4 159825575 159825877 -42502470 - AluJb SINE Alu -8 304 2 1046 89 0 0 chr4 159825945 159826091 -42502256 - L1PA14 LINE L1 -4 6157 6012 22 35 0 0 chr4 159827197 159827226 -42501121 + AT_rich Low_complexity Low_complexity 1 29 0 261 0 0 0 chr4 159828849 159828878 -42499469 + (CA)n Simple_repeat Simple_repeat 2 30 0 272 277 62 18 chr4 159829447 159829559 -42498788 - L1ME4a LINE L1 -67 6054 5938 333 270 130 54 chr4 159829599 159829752 -42498595 - L1ME4a LINE L1 -265 5856 5716 2225 122 32 16 chr4 159829752 159830121 -42498226 + THE1C LTR MaLR 1 375 0 333 270 130 54 chr4 159830121 159830403 -42497944 - L1ME4a LINE L1 -405 5716 5385 675 161 9 0 chr4 159830405 159830517 -42497830 - FLAM_C SINE Alu -30 113 1 615 276 167 15 chr4 159830709 159831039 -42497308 - L2 LINE L2 -411 2903 2524 1766 158 0 20 chr4 159831058 159831350 -42496997 - AluSx SINE Alu -26 286 1 203 203 17 0 chr4 159831585 159831644 -42496703 + (TA)n Simple_repeat Simple_repeat 2 61 0 21 0 0 0 chr4 159831884 159831905 -42496442 + AT_rich Low_complexity Low_complexity 1 21 0 544 293 149 4 chr4 159833145 159833387 -42494960 + L2 LINE L2 3037 3313 0 211 351 58 40 chr4 159833789 159834058 -42494289 + L2 LINE L2 1447 1814 -1500 775 173 51 6 chr4 159834058 159834214 -42494133 + L1MB8 LINE L1 6007 6169 -9 211 351 58 40 chr4 159834214 159834351 -42493996 + L2 LINE L2 1814 1947 -1367 1593 180 43 4 chr4 159834455 159834733 -42493614 - AluJo SINE Alu -23 289 1 194 340 99 102 chr4 159834871 159835203 -42493144 + L2 LINE L2 2942 3272 0 304 303 217 11 chr4 159835403 159835578 -42492769 - MIR SINE MIR -3 259 49 1658 180 7 17 chr4 159835696 159835991 -42492356 - AluJb SINE Alu -20 292 1 23 78 0 0 chr4 159836155 159836206 -42492141 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr4 159836333 159836354 -42491993 + AT_rich Low_complexity Low_complexity 1 21 0 2257 104 7 3 chr4 159836363 159836671 -42491676 + AluSg SINE Alu 1 309 -1 3027 173 8 26 chr4 159836683 159837248 -42491099 + L1MB3 LINE L1 5579 6134 -49 2234 106 0 0 chr4 159837248 159837550 -42490797 + AluSx SINE Alu 1 302 -10 3027 173 8 26 chr4 159837550 159837592 -42490755 + L1MB3 LINE L1 6134 6175 -8 918 172 97 0 chr4 159837818 159838004 -42490343 - MER3 DNA MER1_type -4 205 2 24 32 0 0 chr4 159839607 159839638 -42488709 + AT_rich Low_complexity Low_complexity 1 31 0 304 338 79 7 chr4 159839698 159839837 -42488510 + MIR3 SINE MIR 42 190 -18 2277 93 7 0 chr4 159840174 159840474 -42487873 + AluSg SINE Alu 1 302 -8 190 337 33 33 chr4 159840565 159840657 -42487690 + L2 LINE L2 3129 3220 -52 21 57 0 0 chr4 159840754 159840789 -42487558 + AT_rich Low_complexity Low_complexity 1 35 0 289 293 27 0 chr4 159841014 159841089 -42487258 + L2 LINE L2 3188 3264 -8 2560 52 0 0 chr4 159841292 159841597 -42486750 + AluY SINE Alu 1 305 -6 1806 138 14 59 chr4 159841602 159841957 -42486390 - MER44D DNA MER2_type 0 609 1 4091 11 0 0 chr4 159842595 159843215 -42485132 - L1P1 LINE L1 -437 5718 5099 1941 5 0 0 chr4 159843215 159843436 -42484911 + L1PA2 LINE L1 5932 6152 -3 471 268 55 44 chr4 159845925 159846274 -42482073 + HAL1b LINE L1 1184 6119 -2 1836 152 23 7 chr4 159846287 159846589 -42481758 + AluJo SINE Alu 1 307 -5 207 94 0 0 chr4 159846805 159846820 -42481527 + (CTA)n Simple_repeat Simple_repeat 2 16 -17 2100 95 3 14 chr4 159846820 159847114 -42481233 - AluSc SINE Alu -18 291 1 207 94 0 0 chr4 159847114 159847130 -42481217 + (CTA)n Simple_repeat Simple_repeat 15 33 0 584 162 19 218 chr4 159847140 159847411 -42480936 - MIR SINE MIR -16 246 30 2737 134 21 2 chr4 159847645 159848069 -42480278 - Tigger2a DNA MER2_type 0 434 3 23 92 0 0 chr4 159848728 159848793 -42479554 + AT_rich Low_complexity Low_complexity 1 65 0 204 238 0 0 chr4 159849140 159849182 -42479165 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 1048 25 0 0 chr4 159849759 159849881 -42478466 - L1PA2 LINE L1 -212 5943 5822 25 31 0 0 chr4 159851548 159851580 -42476767 + AT_rich Low_complexity Low_complexity 1 32 0 225 178 0 0 chr4 159852263 159852308 -42476039 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr4 159854982 159855004 -42473343 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 159855962 159855983 -42472364 + AT_rich Low_complexity Low_complexity 1 21 0 330 230 68 0 chr4 159856562 159856636 -42471711 - L2 LINE L2 0 3313 3235 2376 86 0 3 chr4 159857031 159857333 -42471014 + AluSg SINE Alu 3 303 -7 851 168 96 135 chr4 159857408 159857492 -42470855 - MER33 DNA MER1_type -2261 324 238 782 137 0 46 chr4 159857492 159857623 -42470724 - FLAM_C SINE Alu -8 125 1 851 168 96 135 chr4 159857623 159857872 -42470475 - MER33 DNA MER1_type -2347 238 4 262 342 174 33 chr4 159858658 159859103 -42469244 + L2 LINE L2 1767 2148 -1166 2434 57 0 7 chr4 159859103 159859402 -42468945 - AluY SINE Alu -14 297 1 262 342 174 33 chr4 159859402 159859827 -42468520 + L2 LINE L2 2148 2776 -538 736 234 69 0 chr4 159859827 159860002 -42468345 - MER5A DNA MER1_type 0 189 3 262 342 174 33 chr4 159860002 159860049 -42468298 + L2 LINE L2 2776 2815 -499 1365 166 6 99 chr4 159860150 159860487 -42467860 + AluJb SINE Alu 1 308 0 248 359 0 66 chr4 159860525 159860692 -42467655 + L2 LINE L2 2934 3089 -183 201 129 0 0 chr4 159860707 159860738 -42467609 + (TC)n Simple_repeat Simple_repeat 2 32 0 417 252 133 33 chr4 159860823 159860974 -42467373 + L2 LINE L2 3146 3311 -2 221 162 0 0 chr4 159861095 159861132 -42467215 + L2 LINE L2 3277 3313 0 666 308 71 5 chr4 159861599 159861823 -42466524 - MIR SINE MIR -10 252 14 251 265 239 26 chr4 159862076 159862193 -42466154 + L2 LINE L2 3170 3311 -2 34 72 0 0 chr4 159862242 159862311 -42466036 + AT_rich Low_complexity Low_complexity 1 69 0 1800 147 11 0 chr4 159862359 159862638 -42465709 - AluJb SINE Alu -30 282 1 2019 123 4 0 chr4 159862841 159863117 -42465230 + AluSp SINE Alu 1 277 -36 407 156 0 0 chr4 159863221 159863285 -42465062 - AluJ/FLAM SINE Alu -248 64 1 2311 94 0 10 chr4 159863839 159864148 -42464199 - AluSq SINE Alu -7 306 1 22 70 0 0 chr4 159864220 159864263 -42464084 + AT_rich Low_complexity Low_complexity 1 43 0 1336 98 82 5 chr4 159865179 159865373 -42462974 - AluSg/x SINE Alu -14 298 90 30 27 0 0 chr4 159865480 159865517 -42462830 + AT_rich Low_complexity Low_complexity 1 37 0 709 151 14 58 chr4 159866014 159866153 -42462194 - FLAM_C SINE Alu 0 133 1 1009 63 0 8 chr4 159866271 159866427 -42461920 + AluSp/q SINE Alu 162 316 0 276 305 76 9 chr4 159866644 159866749 -42461598 - MER5A DNA MER1_type -22 167 56 2361 92 0 19 chr4 159866908 159867223 -42461124 + AluSq SINE Alu 1 309 -4 4215 163 67 12 chr4 159867413 159868338 -42460009 - L1MB7 LINE L1 -19 6165 5190 2083 141 3 0 chr4 159868556 159868855 -42459492 + AluSx SINE Alu 1 300 -12 1904 128 13 27 chr4 159869465 159869763 -42458584 - AluJb SINE Alu -14 298 5 2157 102 7 0 chr4 159870230 159870552 -42457795 - AluSp SINE Alu 0 313 1 27 0 0 0 chr4 159871346 159871373 -42456974 + AT_rich Low_complexity Low_complexity 1 27 0 553 285 79 13 chr4 159872002 159872230 -42456117 + LTR33 LTR ERVL 279 521 0 1477 137 4 8 chr4 159872358 159872592 -42455755 - MER46A DNA MER2_type -3 233 1 644 283 143 18 chr4 159872642 159872945 -42455402 - MLT1J LTR MaLR -147 299 1 1713 229 138 19 chr4 159873796 159873938 -42454409 - MLT1F LTR MaLR 0 542 418 270 0 0 0 chr4 159873938 159873968 -42454379 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 441 0 0 0 chr4 159873967 159874016 -42454331 + (CA)n Simple_repeat Simple_repeat 1 49 0 1713 229 138 19 chr4 159873968 159874357 -42453990 - MLT1F LTR MaLR -124 418 1 247 282 226 22 chr4 159874364 159874541 -42453806 - MIR SINE MIR -6 256 41 1338 161 192 0 chr4 159874552 159874813 -42453534 - AluJb SINE Alu -1 311 1 36 23 0 0 chr4 159875412 159875455 -42452892 + AT_rich Low_complexity Low_complexity 1 43 0 243 289 83 33 chr4 159875519 159875640 -42452707 + L2 LINE L2 3138 3264 -8 2240 101 7 0 chr4 159875650 159875958 -42452389 + AluSx SINE Alu 1 310 -2 4259 151 37 8 chr4 159876278 159877031 -42451316 - L1MC2 LINE L1 -1 6343 5569 1105 228 132 21 chr4 159877198 159877576 -42450771 + HsTC2 DNA Tc2 1264 1859 -39 22 0 0 0 chr4 159879985 159880007 -42448340 + AT_rich Low_complexity Low_complexity 1 22 0 218 323 0 21 chr4 159880981 159881077 -42447270 + A-rich Low_complexity Low_complexity 3 96 0 5807 87 21 0 chr4 159881832 159882705 -42445642 - L1PA11 LINE L1 -118 6056 5170 1124 186 100 89 chr4 159883431 159883801 -42444546 - MLT1A2 LTR MaLR 0 374 1 1777 191 0 0 chr4 159883801 159884100 -42444247 - MLT1A2-int LTR MaLR 0 1735 1437 228 214 107 18 chr4 159884191 159884247 -42444100 + L2 LINE L2 3192 3252 -61 908 166 80 0 chr4 159884250 159884425 -42443922 - MER3 DNA MER1_type -1 208 20 913 166 21 0 chr4 159884675 159884850 -42443497 + AluJb SINE Alu 135 312 0 1533 110 136 8 chr4 159884932 159885168 -42443179 + AluSx SINE Alu 42 307 -5 207 0 0 0 chr4 159885378 159885401 -42442946 + (T)n Simple_repeat Simple_repeat 1 23 0 337 324 68 29 chr4 159886472 159886834 -42441513 + MLT1J1 LTR MaLR 58 478 -33 193 271 21 0 chr4 159887015 159887063 -42441284 - L2 LINE L2 -5 3267 3219 230 281 18 0 chr4 159887182 159887239 -42441108 - L2 LINE L2 -10 3303 3246 214 407 79 0 chr4 159887259 159887436 -42440911 + L2 LINE L2 2545 2735 -579 225 0 0 0 chr4 159887439 159887464 -42440883 + (A)n Simple_repeat Simple_repeat 1 25 0 673 227 62 23 chr4 159887649 159887825 -42440522 - MLT1A2 LTR MaLR -6 368 186 21 36 0 0 chr4 159888206 159888234 -42440113 + AT_rich Low_complexity Low_complexity 1 28 0 1735 186 3 3 chr4 159888317 159888613 -42439734 - AluJb SINE Alu -16 296 1 698 283 13 56 chr4 159888725 159888958 -42439389 + MIR SINE MIR 40 262 0 1801 173 3 7 chr4 159889656 159889963 -42438384 - AluJo SINE Alu -6 306 1 227 191 0 43 chr4 159890324 159890371 -42437976 - MER117 DNA MER1_type -29 168 124 1442 178 26 15 chr4 159890737 159891007 -42437340 + AluSx SINE Alu 6 278 -34 255 31 0 0 chr4 159891007 159891039 -42437308 + (CAAT)n Simple_repeat Simple_repeat 4 35 0 1485 168 69 14 chr4 159891607 159891898 -42436449 + AluJo SINE Alu 1 307 -5 1790 166 107 43 chr4 159891936 159892339 -42436008 + MLT1C LTR MaLR 1 436 -31 936 193 88 0 chr4 159892339 159892531 -42435816 - MER6B DNA MER2_type 0 210 2 1790 166 107 43 chr4 159892531 159892566 -42435781 + MLT1C LTR MaLR 436 467 0 622 281 11 0 chr4 159892713 159892891 -42435456 + L1MC4 LINE L1 7737 7916 -126 210 260 20 0 chr4 159892927 159892977 -42435370 + GA-rich Low_complexity Low_complexity 2 52 0 903 125 0 0 chr4 159893048 159893176 -42435171 + AluY SINE Alu 5 132 -179 267 167 0 0 chr4 159893261 159893303 -42435044 - 5S rRNA rRNA -79 42 1 23 33 0 0 chr4 159893825 159893855 -42434492 + AT_rich Low_complexity Low_complexity 1 30 0 324 158 0 0 chr4 159894558 159894615 -42433732 + CT-rich Low_complexity Low_complexity 3 59 0 2137 103 0 33 chr4 159894775 159895076 -42433271 + AluSx SINE Alu 1 291 -21 23 33 0 0 chr4 159895756 159895786 -42432561 + AT_rich Low_complexity Low_complexity 1 30 0 280 301 65 51 chr4 159896584 159896810 -42431537 + L1ME1 LINE L1 1814 2007 -4210 1807 192 0 0 chr4 159896810 159897101 -42431246 + AluJb SINE Alu 3 293 -19 280 301 65 51 chr4 159897101 159897293 -42431054 + L1ME1 LINE L1 2007 2195 -4022 1039 213 64 22 chr4 159897388 159897702 -42430645 + L1ME1 LINE L1 2201 2527 -3688 811 168 15 127 chr4 159897702 159897823 -42430524 + MLT1D LTR MaLR 1 77 -428 2063 119 0 7 chr4 159897823 159898118 -42430229 - AluSx SINE Alu -19 293 1 811 168 15 127 chr4 159898118 159898264 -42430083 + MLT1D LTR MaLR 77 238 -267 582 184 9 18 chr4 159898277 159898391 -42429956 + MLT1D LTR MaLR 393 505 0 3275 243 50 56 chr4 159898391 159899813 -42428534 + L1ME1 LINE L1 2523 3935 -2280 580 302 77 26 chr4 159899819 159899990 -42428357 - L1M4 LINE L1 -1037 5109 4948 1640 182 123 26 chr4 159899990 159900414 -42427933 + MLT1C LTR MaLR 1 465 -2 580 302 77 26 chr4 159900414 159900669 -42427678 - L1M4 LINE L1 -1198 4948 4661 275 220 210 10 chr4 159901687 159901787 -42426560 + L2 LINE L2 3193 3312 -1 29 70 0 0 chr4 159903875 159903932 -42424415 + AT_rich Low_complexity Low_complexity 1 57 0 2277 200 102 14 chr4 159903937 159904826 -42423521 + L1ME1 LINE L1 5241 6230 -5 350 319 162 18 chr4 159905084 159905313 -42423034 - MIR SINE MIR 0 262 1 2253 112 0 10 chr4 159905513 159905827 -42422520 - AluSx SINE Alu -1 311 1 330 327 133 18 chr4 159907915 159908080 -42420267 - MIR SINE MIR -64 198 15 1347 176 27 35 chr4 159909041 159909302 -42419045 - AluJo SINE Alu 0 312 54 22 56 0 0 chr4 159909640 159909676 -42418671 + AT_rich Low_complexity Low_complexity 1 36 0 477 312 53 37 chr4 159910079 159910268 -42418079 - MER91A DNA MER1_type -2 194 3 1977 110 0 0 chr4 159910671 159910935 -42417412 - AluSx SINE Alu -7 305 42 225 0 0 0 chr4 159911247 159911272 -42417075 + (A)n Simple_repeat Simple_repeat 1 25 0 1227 165 37 134 chr4 159911456 159911837 -42416510 - MLT1A2 LTR MaLR -6 368 25 1487 86 32 5 chr4 159911837 159912057 -42416290 - L1P LINE L1 -1725 4421 4196 1834 58 16 8 chr4 159912057 159912296 -42416051 + L1PA8 LINE L1 5925 6169 -3 274 336 185 26 chr4 159912333 159912565 -42415782 + L2 LINE L2 2999 3267 -5 211 100 0 60 chr4 159912719 159912769 -42415578 + (TCCC)n Simple_repeat Simple_repeat 2 48 0 1647 181 3 3 chr4 159912769 159913057 -42415290 - AluJo SINE Alu -22 290 3 206 396 10 20 chr4 159913481 159913582 -42414765 - MIR SINE MIR -89 119 20 302 308 132 13 chr4 159913852 159914011 -42414336 + L3 LINE CR1 1195 1372 -205 369 364 116 42 chr4 159914454 159914996 -42413351 + L2 LINE L2 2279 2860 -454 2506 225 16 14 chr4 159915247 159915754 -42412593 + MLT2B3 LTR ERVL 1 508 -46 261 0 0 0 chr4 159915754 159915783 -42412564 + (CA)n Simple_repeat Simple_repeat 1 29 0 397 162 14 0 chr4 159915785 159915859 -42412488 - MLT2B2 LTR ERVL -436 79 5 1278 128 41 36 chr4 159916176 159916395 -42411952 + AluJo SINE Alu 71 290 -22 326 93 73 46 chr4 159916399 159916736 -42411611 + (TA)n Simple_repeat Simple_repeat 1 346 0 519 86 78 27 chr4 159916759 159917458 -42410889 + (TA)n Simple_repeat Simple_repeat 1 734 0 1557 181 7 26 chr4 159918063 159918367 -42409980 + AluJb SINE Alu 1 298 -14 201 222 178 11 chr4 159920105 159920195 -42408152 + L2 LINE L2 3125 3229 -84 3268 138 31 35 chr4 159920320 159920709 -42407638 - MER6A DNA MER2_type -260 605 217 231 36 0 0 chr4 159920709 159920737 -42407610 + (CA)n Simple_repeat Simple_repeat 1 28 0 3268 138 31 35 chr4 159920737 159920954 -42407393 - MER6A DNA MER2_type -648 217 1 21 0 0 0 chr4 159922097 159922118 -42406229 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 159922896 159922918 -42405429 + AT_rich Low_complexity Low_complexity 1 22 0 205 226 16 32 chr4 159923641 159923703 -42404644 + GA-rich Low_complexity Low_complexity 3 63 0 23 0 0 0 chr4 159924236 159924259 -42404088 + AT_rich Low_complexity Low_complexity 1 23 0 1154 280 99 42 chr4 159925036 159925577 -42402770 - L2 LINE L2 -2 3311 2752 656 218 106 12 chr4 159925578 159925748 -42402599 - L2 LINE L2 -898 2416 2231 183 231 125 58 chr4 159925875 159925979 -42402368 + L2 LINE L2 3126 3236 -77 558 290 151 30 chr4 159926158 159926561 -42401786 + L2 LINE L2 2435 2886 -428 33 0 0 0 chr4 159926795 159926828 -42401519 + AT_rich Low_complexity Low_complexity 1 33 0 989 109 118 112 chr4 159927516 159927837 -42400510 + MER33 DNA MER1_type 1 323 -1 2051 50 54 0 chr4 159928541 159928800 -42399547 - AluY SINE Alu -6 305 33 22 56 0 0 chr4 159928810 159928846 -42399501 + AT_rich Low_complexity Low_complexity 1 36 0 1831 144 17 23 chr4 159930661 159930960 -42397387 + AluJo SINE Alu 1 297 -15 2112 117 0 19 chr4 159931150 159931467 -42396880 + AluSx SINE Alu 1 311 -1 212 128 0 21 chr4 159933498 159933545 -42394802 + (TA)n Simple_repeat Simple_repeat 1 46 0 31 44 0 0 chr4 159933595 159933640 -42394707 + AT_rich Low_complexity Low_complexity 1 45 0 264 287 93 19 chr4 159933763 159933871 -42394476 + MIR SINE MIR 143 258 -4 1607 184 3 11 chr4 159934288 159934570 -42393777 + AluJo SINE Alu 1 280 -32 33 25 0 0 chr4 159934577 159934617 -42393730 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr4 159936554 159936582 -42391765 + AT_rich Low_complexity Low_complexity 1 28 0 1715 159 59 0 chr4 159936585 159936874 -42391473 + AluJb SINE Alu 4 309 -3 205 250 100 0 chr4 159937161 159937221 -42391126 + MIR SINE MIR 197 262 0 194 238 24 83 chr4 159937968 159938052 -42390295 + MIR SINE MIR 182 260 -2 317 311 67 37 chr4 159939089 159939253 -42389094 - MIR SINE MIR -45 217 49 301 27 0 0 chr4 159939255 159939292 -42389055 - L1PA5 LINE L1 -668 5487 5451 5287 52 1 0 chr4 159939292 159939941 -42388406 + L1PA5 LINE L1 5496 6148 -6 180 0 0 0 chr4 159939941 159939961 -42388386 + (TA)n Simple_repeat Simple_repeat 2 21 0 180 0 0 0 chr4 159939961 159939981 -42388366 + (T)n Simple_repeat Simple_repeat 1 20 0 6767 109 34 4 chr4 159941480 159942554 -42385793 - Charlie3 DNA MER1_type -597 2113 1008 819 144 36 43 chr4 159942657 159942796 -42385551 - AluJo SINE Alu -174 138 1 25 65 0 0 chr4 159942933 159942979 -42385368 + AT_rich Low_complexity Low_complexity 1 46 0 1979 105 0 0 chr4 159943401 159943649 -42384698 - AluSq SINE Alu -65 248 1 244 269 51 39 chr4 159943657 159943735 -42384612 - MIR SINE MIR -113 149 71 1532 216 118 42 chr4 159944028 159944968 -42383379 + L1ME2 LINE L1 5129 6163 -1 301 176 0 14 chr4 159944984 159945058 -42383289 - L1ME4a LINE L1 -2 6119 6047 1079 78 0 0 chr4 159945177 159945306 -42383041 - AluY SINE Alu -182 129 1 2196 105 35 57 chr4 159945483 159945855 -42382492 + THE1B LTR MaLR 1 364 0 272 236 41 32 chr4 159946043 159946166 -42382181 - L1MC4 LINE L1 -3 8039 7916 557 161 0 0 chr4 159946412 159946499 -42381848 - AluJ/FLAM SINE Alu -225 87 1 24 0 0 0 chr4 159946588 159946612 -42381735 + AT_rich Low_complexity Low_complexity 1 24 0 561 252 8 0 chr4 159946928 159947055 -42381292 - MER94 DNA DNA -2 132 5 2313 99 0 0 chr4 159947521 159947815 -42380532 + AluSx SINE Alu 6 299 -13 588 226 153 21 chr4 159947816 159948006 -42380341 + L2 LINE L2 2413 2627 -687 281 240 224 16 chr4 159948190 159948346 -42380001 + L1ME4a LINE L1 5725 5847 -274 234 0 0 0 chr4 159948346 159948372 -42379975 + (TG)n Simple_repeat Simple_repeat 2 27 0 281 240 224 16 chr4 159948372 159948523 -42379824 + L1ME4a LINE L1 5847 6096 -25 1605 188 72 0 chr4 159948791 159949111 -42379236 - MER2 DNA MER2_type -1 343 1 2265 78 14 0 chr4 159950132 159950427 -42377920 - AluSq SINE Alu -14 299 1 1800 154 3 58 chr4 159950654 159950984 -42377363 - AluJb SINE Alu 0 312 1 236 256 51 0 chr4 159953258 159953336 -42375011 + MER94 DNA DNA 24 105 -29 2254 91 0 10 chr4 159953947 159954254 -42374093 + AluY SINE Alu 1 304 -7 1124 139 135 5 chr4 159954254 159954469 -42373878 - Charlie3 DNA MER1_type -2467 243 1 512 147 21 0 chr4 159954469 159954562 -42373785 - MLT1C LTR MaLR -48 419 325 2383 82 0 0 chr4 159954919 159955213 -42373134 - AluSc SINE Alu -13 296 3 875 111 0 0 chr4 159957372 159957489 -42370858 + FLAM_C SINE Alu 1 117 -16 29 0 0 0 chr4 159957490 159957519 -42370828 + AT_rich Low_complexity Low_complexity 1 29 0 2316 106 3 0 chr4 159957525 159957828 -42370519 + AluSx SINE Alu 1 304 -8 515 212 195 45 chr4 159958504 159958663 -42369684 - MER33 DNA MER1_type -2265 359 225 216 0 0 0 chr4 159958663 159958687 -42369660 + (TG)n Simple_repeat Simple_repeat 2 25 0 515 212 195 45 chr4 159958687 159958698 -42369649 - MER33 DNA MER1_type -2399 225 217 2218 82 0 0 chr4 159958698 159959025 -42369322 - AluY SINE Alu 0 327 1 515 212 195 45 chr4 159959025 159959127 -42369220 - MER33 DNA MER1_type -2407 217 1 453 350 51 25 chr4 159959222 159959459 -42368888 - MIR SINE MIR 0 262 20 272 218 173 15 chr4 159959614 159959747 -42368600 - L1ME4a LINE L1 -2 6119 5966 213 220 0 51 chr4 159959896 159959955 -42368392 - MIR SINE MIR -130 132 77 216 0 0 0 chr4 159960938 159960962 -42367385 + (T)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr4 159962601 159962627 -42365720 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 159964884 159964906 -42363441 + AT_rich Low_complexity Low_complexity 1 22 0 2144 99 3 20 chr4 159965353 159965657 -42362690 - AluY SINE Alu -12 299 1 264 302 23 12 chr4 159966178 159966264 -42362083 + MIR SINE MIR 37 123 -85 1387 227 66 0 chr4 159966264 159966550 -42361797 - AluJo SINE Alu -7 305 1 358 314 47 17 chr4 159966627 159966900 -42361447 - Charlie8 DNA MER1_type -1003 1414 43 637 253 86 116 chr4 159966949 159967087 -42361260 - L2 LINE L2 -32 3281 3140 1882 166 0 10 chr4 159967087 159967377 -42360970 + AluJb SINE Alu 1 287 -25 637 253 86 116 chr4 159967377 159967610 -42360737 - L2 LINE L2 -173 3140 2921 312 348 56 44 chr4 159967633 159967883 -42360464 - L2 LINE L2 -497 2817 2565 471 78 35 49 chr4 159968362 159968504 -42359843 + (TTATA)n Simple_repeat Simple_repeat 5 144 0 * 580 87 58 12 chr4 159968499 159968671 -42359676 + (TA)n Simple_repeat Simple_repeat 1 180 0 529 246 92 20 chr4 159968673 159968868 -42359479 + L1MC4 LINE L1 7692 7900 -142 2315 92 7 0 chr4 159969399 159969694 -42358653 + AluSp SINE Alu 1 297 -16 25 51 0 0 chr4 159969835 159969874 -42358473 + AT_rich Low_complexity Low_complexity 1 39 0 1256 206 138 64 chr4 159970001 159970471 -42357876 + MLT1D LTR MaLR 1 505 0 1632 196 18 3 chr4 159971503 159971789 -42356558 - AluJo SINE Alu -20 292 3 10234 133 52 6 chr4 159971943 159974221 -42354126 + L1PA8 LINE L1 3836 6172 0 1562 211 27 3 chr4 159974641 159974935 -42353412 + AluJo SINE Alu 1 301 -11 386 180 70 47 chr4 159976263 159976391 -42351956 + MIR SINE MIR 132 262 0 884 136 0 0 chr4 159976721 159976846 -42351501 + FLAM_C SINE Alu 3 127 -16 25 51 0 0 chr4 159976853 159976892 -42351455 + AT_rich Low_complexity Low_complexity 1 39 0 191 343 15 0 chr4 159977151 159977218 -42351129 - L2 LINE L2 -2 3311 3244 721 240 53 6 chr4 159977668 159977839 -42350508 + MIR SINE MIR 84 262 0 1548 42 5 0 chr4 159979437 159979627 -42348720 + L1PA2 LINE L1 5965 6155 0 28 50 0 17 chr4 159979680 159979710 -42348637 + AT_rich Low_complexity Low_complexity 1 30 -29 1873 129 31 7 chr4 159979710 159980004 -42348343 + L1PB3 LINE L1 5847 6147 -7 28 50 0 17 chr4 159980004 159980033 -42348314 + AT_rich Low_complexity Low_complexity 30 59 0 2059 129 10 3 chr4 159980343 159980638 -42347709 + AluSc SINE Alu 1 297 -12 5948 240 138 19 chr4 159981113 159981958 -42346389 - L1MEc LINE L1 -1180 5761 5018 1998 98 0 4 chr4 159981958 159982224 -42346123 - AluSc SINE Alu -8 301 37 5948 240 138 19 chr4 159982224 159983531 -42344816 - L1MEc LINE L1 -1923 5018 3868 1817 157 18 7 chr4 159983531 159983844 -42344503 - AluSx SINE Alu 0 312 6 5948 240 138 19 chr4 159983844 159983901 -42344446 - L1MEc LINE L1 -3073 3868 3819 1842 194 70 18 chr4 159983901 159984345 -42344002 + MLT1C LTR MaLR 1 467 0 5948 240 138 19 chr4 159984345 159984772 -42343575 - L1MEc LINE L1 -3122 3819 2842 2194 258 106 78 chr4 159984776 159985779 -42342568 - L1MEc LINE L1 -5126 1297 252 2253 122 0 0 chr4 159985779 159986082 -42342265 - AluSq SINE Alu -10 303 1 2194 258 106 78 chr4 159986082 159986326 -42342021 - L1MEc LINE L1 -6171 252 16 740 286 9 0 chr4 159986326 159986543 -42341804 - L1MC4 LINE L1 -1031 7011 6793 2024 170 86 40 chr4 159986913 159987390 -42340957 - MLT2B1 LTR ERVL -12 508 10 1538 187 11 11 chr4 159988679 159988947 -42339400 + AluJo SINE Alu 1 268 -44 1658 125 40 65 chr4 159989192 159989571 -42338776 + L1MA5A LINE L1 5934 6300 0 2065 105 0 11 chr4 159989611 159989920 -42338427 + AluSq SINE Alu 1 306 0 1687 172 28 3 chr4 159990648 159990933 -42337414 + AluJb SINE Alu 1 292 -20 1407 235 35 8 chr4 159991055 159991886 -42336461 + L1MEc LINE L1 32 926 -5470 38843 61 38 9 chr4 159991889 159996976 -42331371 + L1PA4 LINE L1 5 5241 -905 3283 40 9 12 chr4 159996976 159997388 -42330959 + L1PA4 LINE L1 5730 6154 -1 2118 108 3 20 chr4 159997430 159997735 -42330612 - AluSx SINE Alu -12 300 1 3335 213 78 65 chr4 159997737 159998173 -42330174 + L1MEc LINE L1 2420 2849 -3366 1107 132 52 5 chr4 159998173 159998386 -42329961 + L1MA7 LINE L1 6069 6291 0 3335 213 78 65 chr4 159998386 159999002 -42329345 + L1MEc LINE L1 2849 3496 -2719 2011 120 3 13 chr4 159999002 159999302 -42329045 + AluSx SINE Alu 1 297 -15 3335 213 78 65 chr4 159999302 159999572 -42328775 + L1MEc LINE L1 3496 3761 -2454 2265 102 0 6 chr4 159999992 160000305 -42328042 - AluSx SINE Alu -1 311 1 488 346 75 4 chr4 160000772 160001012 -42327335 - MIR SINE MIR -3 259 3 226 281 184 9 chr4 160001116 160001230 -42327117 + L2 LINE L2 3139 3272 0 1437 160 109 30 chr4 160001515 160001853 -42326494 + MLT1A1 LTR MaLR 1 365 0 198 0 0 0 chr4 160001865 160001887 -42326460 + (A)n Simple_repeat Simple_repeat 1 22 0 930 294 35 7 chr4 160002343 160002629 -42325718 + LTR40a LTR ERVL 21 314 -205 1438 244 22 14 chr4 160002665 160003029 -42325318 - MLT1A2 LTR MaLR -7 367 1 649 217 163 6 chr4 160003040 160003206 -42325141 + LTR40a LTR ERVL 321 512 -7 2215 105 3 6 chr4 160003207 160003521 -42324826 - AluSq SINE Alu 0 313 1 546 298 37 40 chr4 160004166 160004595 -42323752 + L1MEc LINE L1 3675 4102 -2113 267 265 92 20 chr4 160004627 160004725 -42323622 + MIR SINE MIR 158 262 0 228 197 28 0 chr4 160004931 160005002 -42323345 + L1MEc LINE L1 4431 4503 -1712 21 36 0 0 chr4 160005300 160005328 -42323019 + AT_rich Low_complexity Low_complexity 1 28 0 237 108 0 0 chr4 160005353 160005390 -42322957 + (T)n Simple_repeat Simple_repeat 1 37 0 319 320 75 25 chr4 160005854 160006297 -42322050 + L1ME3A LINE L1 5466 5940 -230 1763 176 7 3 chr4 160006388 160006683 -42321664 + AluJb SINE Alu 2 297 -15 3663 191 45 4 chr4 160006911 160007614 -42320733 - MER44D DNA MER2_type -1 604 1 3084 236 61 8 chr4 160008368 160009290 -42319057 - L1ME2 LINE L1 -9 6224 5251 943 214 68 16 chr4 160009362 160009670 -42318677 - L1ME2 LINE L1 -1477 4738 4415 1863 142 26 3 chr4 160009675 160009984 -42318363 + L1PA15 LINE L1 5732 6049 -116 266 154 39 0 chr4 160010003 160010055 -42318292 + L1PA15 LINE L1 6030 6083 -82 645 259 69 42 chr4 160010066 160010570 -42317777 - L1ME2 LINE L1 -2648 3567 3016 650 200 0 0 chr4 160010578 160010703 -42317644 - AluJb SINE Alu -187 125 1 785 272 108 7 chr4 160010705 160011157 -42317190 - L1ME2 LINE L1 -3193 3022 2525 653 195 114 0 chr4 160011158 160011307 -42317040 - MLT1D LTR MaLR 0 505 340 * 672 226 30 42 chr4 160011306 160011474 -42316873 + MLT1A1 LTR MaLR 198 363 -2 321 240 27 0 chr4 160011476 160011551 -42316796 + MLT1A1-int LTR MaLR 1 77 -1658 1270 245 29 65 chr4 160011558 160012123 -42316224 + MLT1A1-int LTR MaLR 591 1150 -545 1070 205 43 4 chr4 160012123 160012357 -42315990 + MLT1A1-int LTR MaLR 1479 1721 -14 1212 212 75 29 chr4 160012363 160012712 -42315635 + MLT1A1 LTR MaLR 1 365 0 804 241 13 55 chr4 160012717 160012953 -42315394 - L1MD3 LINE L1 -454 7541 7316 186 133 0 0 chr4 160012955 160012985 -42315362 + (TCCA)n Simple_repeat Simple_repeat 4 33 0 433 228 72 46 chr4 160013018 160013255 -42315092 - L1ME2 LINE L1 -5494 902 660 1022 251 66 44 chr4 160015727 160016272 -42312075 - L1MC5 LINE L1 -44 7917 7361 639 245 79 32 chr4 160016482 160016698 -42311649 + HAL1 LINE L1 1550 1775 -732 271 313 10 0 chr4 160017261 160017360 -42310987 + HAL1 LINE L1 2123 2222 -285 2196 69 0 7 chr4 160017388 160017663 -42310684 + AluY SINE Alu 24 296 -15 2290 101 0 19 chr4 160018583 160018891 -42309456 + AluSg SINE Alu 1 302 -8 396 251 64 43 chr4 160018940 160019127 -42309220 - L1MC5 LINE L1 -30 7931 7741 779 254 107 12 chr4 160019648 160019892 -42308455 + LTR16C LTR ERVL 213 479 -12 182 384 0 0 chr4 160019954 160020027 -42308320 - MIR SINE MIR -38 224 152 430 240 122 51 chr4 160020162 160020358 -42307989 + L2 LINE L2 3102 3311 -2 731 266 274 26 chr4 160020419 160020799 -42307548 + L2 LINE L2 2840 3313 0 233 274 41 14 chr4 160021074 160021147 -42307200 - L3 LINE CR1 -733 844 770 1517 180 47 10 chr4 160022319 160022619 -42305728 - AluJb SINE Alu -1 311 1 776 220 11 31 chr4 160022705 160022896 -42305451 + LTR41 LTR ERVL 1 187 -586 21 57 0 0 chr4 160023306 160023341 -42305006 + AT_rich Low_complexity Low_complexity 1 35 0 487 18 0 0 chr4 160023432 160023526 -42304821 + L1PA3 LINE L1 6082 6175 0 6106 131 7 8 chr4 160024257 160025591 -42302756 - L1MA2 LINE L1 -141 6163 4828 21 0 0 0 chr4 160026464 160026485 -42301862 + AT_rich Low_complexity Low_complexity 1 21 0 181 299 69 35 chr4 160027099 160027186 -42301161 - MIR SINE MIR -152 110 21 1192 296 31 61 chr4 160027270 160027955 -42300392 - HAL1 LINE L1 -1432 1075 412 595 325 41 0 chr4 160028040 160028237 -42300110 + MIR SINE MIR 37 241 -21 186 43 0 0 chr4 160029146 160029169 -42299178 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 187 354 91 0 chr4 160029497 160029596 -42298751 + L2 LINE L2 3205 3312 -1 677 238 33 0 chr4 160030106 160030257 -42298090 + MIR SINE MIR 102 257 -5 499 288 106 51 chr4 160033168 160033442 -42294905 - MLT1H LTR MaLR -59 490 202 4267 141 125 20 chr4 160033489 160034331 -42294016 - L1MB3 LINE L1 0 6183 5254 202 402 81 0 chr4 160034436 160034523 -42293824 - L2 LINE L2 -42 3230 3137 1655 235 34 70 chr4 160035398 160036087 -42292260 + L1MC5 LINE L1 6563 7238 -723 787 240 69 15 chr4 160036482 160036686 -42291661 - MIR SINE MIR -34 228 14 279 303 32 77 chr4 160036791 160036946 -42291401 + MIR3 SINE MIR 58 205 -3 312 264 28 0 chr4 160037137 160037209 -42291138 + MIR SINE MIR 7 80 -182 2316 77 0 0 chr4 160038497 160038794 -42289553 + AluSq SINE Alu 1 297 -16 307 320 165 39 chr4 160038828 160039437 -42288910 + L2 LINE L2 1920 2641 -673 347 0 23 0 chr4 160039437 160039480 -42288867 + (CA)n Simple_repeat Simple_repeat 2 45 0 307 320 165 39 chr4 160039480 160039614 -42288733 + L2 LINE L2 2641 2757 -557 22 35 0 0 chr4 160040730 160040759 -42287588 + AT_rich Low_complexity Low_complexity 1 29 0 3259 206 58 58 chr4 160041029 160041154 -42287193 - L1MB7 LINE L1 -9 6175 6052 292 56 0 0 chr4 160041154 160041190 -42287157 + U2 snRNA snRNA 1 36 -152 3259 206 58 58 chr4 160041190 160041942 -42286405 - L1MB7 LINE L1 -132 6052 5302 2305 171 34 61 chr4 160041942 160042469 -42285878 + MLT2B2 LTR ERVL 1 513 -2 3259 206 58 58 chr4 160042469 160043298 -42285049 - L1MB7 LINE L1 -882 5302 4439 3255 243 46 50 chr4 160043302 160044211 -42284136 - L1MB7 LINE L1 -1927 4219 3314 1802 156 6 32 chr4 160044211 160044526 -42283821 + AluJo SINE Alu 1 307 -5 3255 243 46 50 chr4 160044526 160044888 -42283459 - L1MB7 LINE L1 -2832 3314 2952 415 300 75 42 chr4 160045262 160045502 -42282845 + HERVL40 LTR ERVL 1369 1616 -3914 886 252 126 16 chr4 160045503 160045749 -42282598 + HERVL40 LTR ERVL 2051 2323 -3207 190 263 18 18 chr4 160045749 160045806 -42282541 + L2 LINE L2 1914 1970 -1344 369 83 0 0 chr4 160045833 160045880 -42282467 + MSTA LTR MaLR 1 47 -381 1656 143 114 18 chr4 160045880 160046222 -42282125 - THE1C LTR MaLR 0 375 1 * 1833 150 141 9 chr4 160046222 160046562 -42281785 + MSTA LTR MaLR 43 428 0 467 323 95 21 chr4 160046652 160046937 -42281410 + L2 LINE L2 2086 2391 -923 332 348 151 23 chr4 160047187 160047492 -42280855 + L2 LINE L2 2830 3173 -140 1400 202 21 3 chr4 160047598 160047885 -42280462 + AluJo SINE Alu 1 292 -20 1097 223 27 22 chr4 160048202 160048483 -42279864 + MLT1F1 LTR MaLR 46 362 -233 28 0 0 0 chr4 160049029 160049057 -42279290 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr4 160049274 160049304 -42279043 + AT_rich Low_complexity Low_complexity 1 30 0 3902 140 22 12 chr4 160049320 160050004 -42278343 - L1MA5A LINE L1 -20 6277 5587 1899 212 41 70 chr4 160050004 160050571 -42277776 - L1ME1 LINE L1 -11 6155 5606 3270 218 76 63 chr4 160050632 160052112 -42276235 - L1ME1 LINE L1 -5 6230 4723 800 153 0 0 chr4 160052112 160052230 -42276117 - FLAM_C SINE Alu -15 118 1 3270 218 76 63 chr4 160052230 160052742 -42275605 - L1ME1 LINE L1 -1512 4723 4219 2300 264 74 87 chr4 160052721 160054097 -42274250 - L1ME1 LINE L1 -2443 3772 2427 * 1817 184 147 2 chr4 160054097 160054505 -42273842 + MLT1C LTR MaLR 1 467 0 2300 264 74 87 chr4 160054505 160054617 -42273730 - L1ME1 LINE L1 -3788 2427 2315 1678 161 27 12 chr4 160054617 160054952 -42273395 + L1MA9 LINE L1 5973 6312 0 233 302 0 0 chr4 160054979 160055065 -42273282 - L1ME1 LINE L1 -4043 2353 2268 30 0 0 0 chr4 160055085 160055115 -42273232 + AT_rich Low_complexity Low_complexity 1 30 0 306 298 41 0 chr4 160055157 160055278 -42273069 + L1ME3A LINE L1 5698 5823 -298 3208 146 52 15 chr4 160055291 160055888 -42272459 - L1MA8 LINE L1 -66 6225 5607 254 219 18 35 chr4 160055913 160056027 -42272320 + (TA)n Simple_repeat Simple_repeat 2 113 0 455 142 72 2 chr4 160057587 160058023 -42270324 + (TA)n Simple_repeat Simple_repeat 1 466 0 32 81 0 0 chr4 160058023 160058097 -42270250 + AT_rich Low_complexity Low_complexity 1 74 0 382 148 74 0 chr4 160058097 160058494 -42269853 + (TA)n Simple_repeat Simple_repeat 1 426 0 414 337 71 12 chr4 160063352 160063521 -42264826 - MIR3 SINE MIR -7 201 23 249 246 46 0 chr4 160065102 160065167 -42263180 + GA-rich Low_complexity Low_complexity 3 70 0 23 0 0 0 chr4 160065867 160065890 -42262457 + AT_rich Low_complexity Low_complexity 1 23 0 22 88 0 0 chr4 160067194 160067251 -42261096 + AT_rich Low_complexity Low_complexity 1 57 0 1569 200 0 14 chr4 160067317 160067612 -42260735 - AluJo SINE Alu -13 299 9 265 272 112 58 chr4 160068158 160068574 -42259773 + L1MC4 LINE L1 7312 7849 -193 434 258 66 7 chr4 160068659 160068810 -42259537 + L1ME3A LINE L1 6010 6169 -1 5024 158 11 22 chr4 160068952 160069853 -42258494 + L1PA16 LINE L1 4429 5314 -852 2063 119 0 14 chr4 160069853 160070147 -42258200 + AluSx SINE Alu 3 292 -20 5024 158 11 22 chr4 160070147 160070866 -42257481 + L1PA16 LINE L1 5314 6039 -127 716 153 76 35 chr4 160070869 160071013 -42257334 + AluJb SINE Alu 149 298 -14 881 122 0 14 chr4 160071015 160071154 -42257193 + L1PA16 LINE L1 6024 6160 -6 2101 116 0 7 chr4 160071162 160071455 -42256892 - AluSc SINE Alu -17 292 2 273 172 31 47 chr4 160071472 160071536 -42256811 + MIR SINE MIR 80 142 -120 26 82 0 0 chr4 160072130 160072191 -42256156 + AT_rich Low_complexity Low_complexity 1 61 0 1799 85 97 4 chr4 160072420 160072678 -42255669 - AluSx SINE Alu -30 282 1 246 266 50 50 chr4 160073199 160073338 -42255009 - MLT1L LTR MaLR -28 587 449 248 295 16 114 chr4 160073354 160073547 -42254800 - MLT1J LTR MaLR -228 283 110 22 56 0 0 chr4 160073728 160073764 -42254583 + AT_rich Low_complexity Low_complexity 1 36 0 266 128 0 0 chr4 160073827 160073866 -42254481 + L1M4c LINE L1 2446 2484 -3900 1069 135 82 78 chr4 160073873 160074118 -42254229 - AluJo SINE Alu -20 292 47 236 227 0 0 chr4 160074118 160074184 -42254163 + L1M4c LINE L1 2472 2537 -3845 519 252 267 0 chr4 160074404 160074610 -42253737 + MIR SINE MIR 2 262 0 290 330 0 80 chr4 160074618 160074730 -42253617 - L2 LINE L2 -1 3271 3169 27 0 0 0 chr4 160076044 160076071 -42252276 + AT_rich Low_complexity Low_complexity 1 27 0 1834 143 0 0 chr4 160076299 160076571 -42251776 - AluSx SINE Alu -1 311 40 266 283 24 148 chr4 160076629 160076919 -42251428 + L2 LINE L2 2978 3231 -41 352 341 37 0 chr4 160077127 160077262 -42251085 + MIR SINE MIR 29 168 -94 621 247 29 24 chr4 160080937 160081107 -42247240 - MIR SINE MIR -13 249 79 290 24 48 0 chr4 160081515 160081557 -42246790 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 2281 68 0 0 chr4 160081557 160081836 -42246511 - AluY SINE Alu -32 279 1 1866 165 72 24 chr4 160082890 160083266 -42245081 + MSTD LTR MaLR 1 394 -2 1917 147 38 0 chr4 160083362 160083654 -42244693 + AluJb SINE Alu 4 306 -6 1839 158 0 36 chr4 160083847 160084151 -42244196 - MER1B DNA MER1_type -1 338 46 6476 46 0 17 chr4 160084312 160084750 -42243597 + L1PA5 LINE L1 5345 5764 -390 2471 74 0 0 chr4 160084750 160085059 -42243288 + AluY SINE Alu 1 309 -2 6476 46 0 17 chr4 160085059 160085444 -42242903 + L1PA5 LINE L1 5764 6154 0 284 200 0 0 chr4 160085444 160085499 -42242848 - MER1B DNA MER1_type -237 100 46 21 36 0 0 chr4 160086615 160086643 -42241704 + AT_rich Low_complexity Low_complexity 1 28 0 2049 93 11 11 chr4 160087441 160087721 -42240626 + AluSc SINE Alu 6 285 -24 282 29 0 0 chr4 160087721 160087756 -42240591 + (CA)n Simple_repeat Simple_repeat 2 36 0 1338 245 3 3 chr4 160087773 160088067 -42240280 - AluJo SINE Alu -18 294 1 36 0 0 0 chr4 160088089 160088125 -42240222 + AT_rich Low_complexity Low_complexity 1 36 0 264 284 92 73 chr4 160088359 160088468 -42239879 + L2 LINE L2 3160 3270 -2 1534 243 33 29 chr4 160088957 160089410 -42238937 + L1MC4 LINE L1 6763 7217 -825 * 1731 207 71 76 chr4 160089354 160089862 -42238485 - L1MD3 LINE L1 -116 7879 7370 2012 143 7 3 chr4 160089862 160090163 -42238184 - AluSx SINE Alu -10 302 1 305 278 11 0 chr4 160090163 160090253 -42238094 - MLT1F1 LTR MaLR -442 125 35 1731 207 71 76 chr4 160090253 160090827 -42237520 - L1MD3 LINE L1 -623 7372 6501 905 285 73 11 chr4 160090835 160091204 -42237143 + L1MC4 LINE L1 7241 7632 -410 1801 84 0 0 chr4 160091245 160091472 -42236875 + AluSc SINE Alu 1 227 -82 301 194 14 0 chr4 160291509 160291581 -42036766 + L1M3e LINE L1 2009 2081 -4949 212 344 66 33 chr4 160292062 160292213 -42036134 + L2 LINE L2 2892 3047 -225 1215 281 56 14 chr4 160292385 160292901 -42035446 + MER115 DNA AcHobo 108 693 0 318 328 9 0 chr4 160293770 160293886 -42034461 - L2 LINE L2 -14 3299 3183 421 308 17 0 chr4 160293908 160294028 -42034319 - L2 LINE L2 -1819 1495 1374 1718 152 22 0 chr4 160294364 160294666 -42033681 - AluSx SINE Alu 0 313 6 989 266 34 0 chr4 160295106 160295339 -42033008 - MIR SINE MIR -5 257 17 942 202 0 12 chr4 160295617 160295785 -42032562 - FRAM SINE Alu 0 166 1 366 328 50 22 chr4 160295831 160296011 -42032336 - L3 LINE CR1 -75 1502 1318 199 378 27 0 chr4 160296744 160296818 -42031529 - MIR SINE MIR -86 122 47 338 127 0 0 chr4 160296878 160296933 -42031414 + L1ME3 LINE L1 6106 6160 -2 211 299 215 19 chr4 160297086 160297193 -42031154 - MIR SINE MIR -115 147 20 252 182 28 149 chr4 160297323 160297504 -42030843 - MER113 DNA MER1_type? -358 163 5 858 313 24 27 chr4 160297622 160298214 -42030133 + L1M3a LINE L1 1 916 -5039 3743 166 57 65 chr4 160298901 160299862 -42028485 + LTR13 LTR ERVK 1 954 0 450 288 62 7 chr4 160299881 160300027 -42028320 - MIR SINE MIR -108 154 1 406 291 36 18 chr4 160300027 160300132 -42028215 + MIR SINE MIR 48 154 -108 2678 149 38 8 chr4 160300606 160301108 -42027239 + L1MB7 LINE L1 5625 6141 -43 1649 168 20 38 chr4 160301128 160301420 -42026927 - AluJo SINE Alu -23 289 3 490 231 71 26 chr4 160302431 160302614 -42025733 + MIR3 SINE MIR 14 207 -1 1684 175 0 31 chr4 160303076 160303396 -42024951 - AluJo SINE Alu -2 310 1 1691 172 61 22 chr4 160303643 160304004 -42024343 + THE1C LTR MaLR 1 375 0 22 0 0 0 chr4 160304678 160304700 -42023647 + AT_rich Low_complexity Low_complexity 1 22 0 1291 307 120 22 chr4 160304918 160305844 -42022503 - L2 LINE L2 -4 3309 2278 25 51 0 0 chr4 160306348 160306387 -42021960 + AT_rich Low_complexity Low_complexity 1 39 0 2458 55 0 36 chr4 160307255 160307564 -42020783 - AluY SINE Alu -13 298 1 353 273 7 97 chr4 160307802 160307956 -42020391 - MER5A DNA MER1_type -48 141 2 241 292 169 39 chr4 160307983 160308113 -42020234 - MIR3 SINE MIR -32 176 30 12465 103 5 8 chr4 160309003 160311633 -42016714 - L1PA8 LINE L1 0 6487 3862 11372 127 22 47 chr4 160311733 160314321 -42014026 - L1PA8 LINE L1 -3848 2613 5 1824 148 32 0 chr4 160314505 160314783 -42013564 + AluJb SINE Alu 2 288 -24 21 0 0 0 chr4 160314783 160314804 -42013543 + AT_rich Low_complexity Low_complexity 1 21 0 449 267 160 7 chr4 160314917 160315252 -42013095 - LTR16C LTR ERVL -2 489 80 314 281 96 26 chr4 160315283 160315586 -42012761 + L1ME4a LINE L1 5794 6117 -4 372 263 45 113 chr4 160316122 160316349 -42011998 - L1ME LINE L1 -1286 1204 893 2694 128 11 23 chr4 160316349 160316786 -42011561 + Tigger2a DNA MER2_type 2 433 -1 372 263 45 113 chr4 160316786 160316873 -42011474 - L1ME LINE L1 -1597 893 802 290 275 169 7 chr4 160317043 160317185 -42011162 - L1ME LINE L1 -5446 673 509 309 211 0 28 chr4 160318627 160318698 -42009649 - L2 LINE L2 -1 3312 3244 1931 128 122 15 chr4 160319670 160319999 -42008348 + THE1B LTR MaLR 1 364 0 11240 108 14 3 chr4 160319999 160321561 -42006786 + THE1B-int LTR MaLR 1 1580 0 1835 134 93 32 chr4 160321561 160321904 -42006443 + THE1B LTR MaLR 1 364 0 895 162 19 103 chr4 160322036 160322307 -42006040 - L1MB8 LINE L1 0 6178 5931 1423 181 12 4 chr4 160322374 160322617 -42005730 - AluJb SINE Alu -25 287 43 307 245 31 0 chr4 160322906 160323004 -42005343 - L1MEc LINE L1 -4749 1647 1547 23 0 0 0 chr4 160325239 160325262 -42003085 + AT_rich Low_complexity Low_complexity 1 23 0 234 206 16 16 chr4 160326508 160326571 -42001776 + CT-rich Low_complexity Low_complexity 1 63 0 716 283 44 80 chr4 160327594 160327958 -42000389 - MLT1J2 LTR MaLR -8 442 92 2312 138 71 84 chr4 160327969 160328578 -41999769 - LTR18B LTR ERVL -13 601 1 1296 234 32 32 chr4 160328581 160328953 -41999394 - MLT1A2 LTR MaLR -2 372 1 239 318 0 24 chr4 160328953 160329038 -41999309 - MLT1J1 LTR MaLR -363 83 1 2726 128 45 5 chr4 160329466 160329913 -41998434 - MER4C LTR ERV1 0 465 1 351 279 34 87 chr4 160330353 160330566 -41997781 + Charlie2 DNA MER1_type 26 218 -2644 333 0 0 0 chr4 160330566 160330603 -41997744 + (CA)n Simple_repeat Simple_repeat 2 38 0 351 279 34 87 chr4 160330603 160330711 -41997636 + Charlie2 DNA MER1_type 218 330 -2532 * 983 190 89 67 chr4 160330695 160330962 -41997385 + Charlie2 DNA MER1_type 1846 2124 -738 5889 134 25 32 chr4 160330962 160332041 -41996306 + MER11C LTR ERVK 1 1071 0 983 190 89 67 chr4 160332041 160332131 -41996216 + Charlie2 DNA MER1_type 2124 2211 -651 299 259 62 24 chr4 160332260 160332455 -41995892 - MLT1L LTR MaLR -340 275 4 426 287 112 5 chr4 160332890 160333078 -41995269 - MIR SINE MIR 0 262 55 288 262 255 7 chr4 160333193 160333334 -41995013 - MIR SINE MIR -15 247 72 2858 137 27 48 chr4 160333336 160333970 -41994377 + MER4B LTR ERV1 4 779 0 1210 75 16 5 chr4 160334321 160334507 -41993840 + L1PA13 LINE L1 1845 2032 -4755 2235 120 0 0 chr4 160335325 160335624 -41992723 - AluSx SINE Alu -8 304 6 545 282 83 11 chr4 160336809 160336990 -41991357 + MIR SINE MIR 20 213 -49 1406 223 65 8 chr4 160337000 160337354 -41990993 - MLT2B1 LTR ERVL -145 375 2 429 248 15 7 chr4 160338156 160338293 -41990054 - MER104 DNA Tc2 0 180 43 570 263 89 22 chr4 160338311 160338627 -41989720 - L1M4 LINE L1 -1165 4981 4645 665 262 82 21 chr4 160338924 160339206 -41989141 - L1M4 LINE L1 -1932 4214 3916 201 74 0 0 chr4 160339261 160339288 -41989059 + (TG)n Simple_repeat Simple_repeat 2 28 0 276 106 21 0 chr4 160339435 160339515 -41988832 - Alu SINE Alu 0 321 241 313 257 35 88 chr4 160339744 160339915 -41988432 + MLT1J LTR MaLR 1 198 -284 742 191 83 18 chr4 160340061 160340229 -41988118 - AluJo SINE Alu -13 299 121 3291 91 13 13 chr4 160340626 160341079 -41987268 + MLT2A2 LTR ERVL 1 453 0 354 218 119 20 chr4 160341376 160341477 -41986870 - MIR SINE MIR -1 261 151 2066 180 31 19 chr4 160341477 160341900 -41986447 + MSTA LTR MaLR 1 428 0 8258 168 22 20 chr4 160341900 160343538 -41984809 + MSTA-int LTR MaLR 1 1645 -6 861 150 15 0 chr4 160343543 160343676 -41984671 + MSTA LTR MaLR 1 135 -293 501 88 0 0 chr4 160343670 160343738 -41984609 + MSTA LTR MaLR 361 428 0 * 252 237 34 0 chr4 160343742 160343801 -41984546 - MIR SINE MIR -111 151 91 1576 204 89 72 chr4 160344159 160344512 -41983835 + MER69B DNA AcHobo 620 988 -1538 1450 203 30 0 chr4 160344512 160344778 -41983569 + AluJo SINE Alu 15 288 -24 1576 204 89 72 chr4 160344778 160345008 -41983339 + MER69B DNA AcHobo 988 1213 -13 301 253 111 19 chr4 160345413 160345575 -41982772 - MARNA DNA Mariner -214 372 196 208 356 35 11 chr4 160346406 160346493 -41981854 + L2 LINE L2 3209 3297 -16 223 360 27 9 chr4 160346756 160346867 -41981480 + L2 LINE L2 2791 2903 -411 1939 272 31 20 chr4 160347909 160348519 -41979828 - HERV16 LTR ERVL -4379 617 1 676 278 61 16 chr4 160348536 160348781 -41979566 - LTR16A LTR ERVL -16 434 179 523 290 90 35 chr4 160348792 160349047 -41979300 + L2 LINE L2 3045 3313 0 1749 199 0 0 chr4 160349440 160349742 -41978605 - AluJb SINE Alu -6 306 5 200 277 108 0 chr4 160349783 160349848 -41978499 - L2 LINE L2 -5 3267 3196 193 372 97 42 chr4 160349947 160350256 -41978091 - L2 LINE L2 -676 2638 2313 338 281 12 0 chr4 160350738 160350820 -41977527 + L2 LINE L2 3231 3313 0 2746 96 3 0 chr4 160351723 160352086 -41976261 + THE1B LTR MaLR 1 364 0 10421 104 10 58 chr4 160352086 160353746 -41974601 + THE1B-int LTR MaLR 1 1580 0 2380 110 30 0 chr4 160353748 160354083 -41974264 + THE1B LTR MaLR 3 347 -17 194 340 77 71 chr4 160354868 160355410 -41972937 + L2 LINE L2 2468 3010 -262 231 365 75 0 chr4 160355810 160355917 -41972430 + L2 LINE L2 3158 3272 0 1996 111 102 41 chr4 160356302 160356645 -41971702 - THE1B LTR MaLR 0 364 1 11402 98 13 5 chr4 160356645 160357127 -41971220 - THE1B-int LTR MaLR 0 1580 1103 4152 76 30 0 chr4 160357127 160357690 -41970657 + LTR19B LTR ERV1 1 580 0 11402 98 13 5 chr4 160357690 160358773 -41969574 - THE1B-int LTR MaLR -477 1103 2 1658 155 146 16 chr4 160358774 160359096 -41969251 - THE1B LTR MaLR 0 364 1 215 367 164 8 chr4 160359108 160359236 -41969111 + L2 LINE L2 3122 3269 -3 1631 197 3 3 chr4 160359589 160359899 -41968448 + AluSx SINE Alu 1 310 -2 3363 235 113 51 chr4 160360009 160361497 -41966850 - L1MC4a LINE L1 -353 5803 5664 256 290 77 24 chr4 160361879 160362048 -41966299 - HAL1b LINE L1 -503 845 668 5137 188 31 47 chr4 160362440 160362994 -41965353 - L1MB2 LINE L1 -1 6234 5672 2421 77 0 0 chr4 160362994 160363305 -41965042 - AluY SINE Alu 0 311 1 5137 188 31 47 chr4 160363305 160363678 -41964669 - L1MB2 LINE L1 -563 5672 5294 1650 95 51 0 chr4 160363678 160363931 -41964416 + L1MA1 LINE L1 6030 6295 -7 5137 188 31 47 chr4 160363931 160364685 -41963662 - L1MB2 LINE L1 -941 5294 4607 1625 158 60 8 chr4 160364685 160364986 -41963361 + AluSg SINE Alu 1 315 0 5137 188 31 47 chr4 160364986 160365599 -41962748 - L1MB2 LINE L1 -1628 4607 3985 1754 222 73 17 chr4 160365641 160366119 -41962228 + LTR22 LTR ERVK 1 505 -4 4365 126 6 2 chr4 160366130 160366763 -41961584 + HERVK22 LTR ERVK 124 759 -6078 835 215 0 6 chr4 160367176 160367339 -41961008 + HERVK22 LTR ERVK 2337 2498 -4339 * 11614 99 11 1 chr4 160367325 160368918 -41959429 + HERVK22 LTR ERVK 3471 5079 -1758 1593 195 0 10 chr4 160368888 160369305 -41959042 + HERVKC4 LTR ERVK 3172 6837 0 * 1876 196 79 17 chr4 160369305 160369784 -41958563 + LTR22 LTR ERVK 1 509 0 4251 223 63 32 chr4 160369787 160370012 -41958335 - L1MB2 LINE L1 -2354 3856 3639 2325 105 0 0 chr4 160370012 160370318 -41958029 - AluY SINE Alu -5 306 1 1617 190 0 24 chr4 160370328 160370623 -41957724 - AluJb SINE Alu -24 288 1 4251 223 63 32 chr4 160370623 160371739 -41956608 - L1MB2 LINE L1 -2579 3631 2462 219 105 53 0 chr4 160371744 160371801 -41956546 + (TA)n Simple_repeat Simple_repeat 1 60 0 245 296 72 0 chr4 160371801 160371926 -41956421 - L1MB2 LINE L1 -3743 2467 2334 * 1401 262 57 6 chr4 160371916 160372446 -41955901 - L1MB2 LINE L1 -4686 1455 899 435 173 13 0 chr4 160372874 160372949 -41955398 - L1MB2 LINE L1 -5815 316 241 21 0 0 0 chr4 160373314 160373335 -41955012 + AT_rich Low_complexity Low_complexity 1 21 0 535 267 72 38 chr4 160373588 160373984 -41954363 - ERVL LTR ERVL -2260 3504 3070 296 190 204 63 chr4 160374176 160374397 -41953950 - L1MC4a LINE L1 -1813 5995 5744 551 229 243 22 chr4 160374439 160374706 -41953641 - L1MC4a LINE L1 -2168 5640 5315 187 282 90 13 chr4 160375492 160375570 -41952777 - MIR SINE MIR -125 137 54 3240 95 32 4 chr4 160376356 160376820 -41951527 - L1PA8A LINE L1 -12 6119 5643 183 80 0 0 chr4 160379028 160379053 -41949294 + (A)n Simple_repeat Simple_repeat 1 25 0 2141 115 0 0 chr4 160379293 160379605 -41948742 - AluSq SINE Alu 0 317 6 204 40 0 0 chr4 160379611 160379636 -41948711 + (T)n Simple_repeat Simple_repeat 1 25 0 975 240 53 7 chr4 160380744 160381027 -41947320 - L1ME2 LINE L1 -6 6158 5863 1503 211 102 10 chr4 160381211 160381594 -41946753 - L1ME2 LINE L1 -285 5879 5462 387 397 10 0 chr4 160381808 160382002 -41946345 + MER117 DNA MER1_type 2 197 0 2620 190 60 14 chr4 160382411 160382973 -41945374 - L1MB7 LINE L1 -59 6125 5538 644 247 90 18 chr4 160383469 160383692 -41944655 + L1ME1 LINE L1 5923 6161 -5 302 213 40 27 chr4 160383889 160383964 -41944383 + MER103 DNA DNA 89 164 -2 420 222 74 9 chr4 160384703 160384811 -41943536 - MIR SINE MIR -77 185 71 503 304 107 40 chr4 160386666 160388049 -41940298 + L1MEc LINE L1 789 2263 -4133 274 156 173 123 chr4 160388033 160388154 -41940193 + L1MEc LINE L1 2898 3032 -3183 * 2354 100 3 0 chr4 160388154 160388465 -41939882 + AluSx SINE Alu 1 312 0 274 156 173 123 chr4 160388465 160388522 -41939825 + L1MEc LINE L1 3032 3085 -3130 287 281 35 18 chr4 160388545 160388659 -41939688 + L1MEc LINE L1 3597 3712 -2503 2496 255 123 39 chr4 160388671 160390911 -41937436 + L1MEc LINE L1 3773 6215 -24 202 152 22 22 chr4 160392343 160392389 -41935958 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 24 0 0 0 chr4 160392808 160392832 -41935515 + AT_rich Low_complexity Low_complexity 1 24 0 187 316 32 32 chr4 160392911 160393006 -41935341 - L2 LINE L2 -343 2970 2876 1981 136 0 0 chr4 160393805 160394084 -41934263 + AluSx SINE Alu 1 279 -33 417 20 0 0 chr4 160394084 160394134 -41934213 + (CA)n Simple_repeat Simple_repeat 1 50 0 822 271 68 9 chr4 160394292 160394513 -41933834 - MIR SINE MIR -9 253 20 279 260 164 10 chr4 160394699 160394803 -41933544 + L2 LINE L2 3189 3308 -5 23 33 0 0 chr4 160395082 160395112 -41933235 + AT_rich Low_complexity Low_complexity 1 30 0 709 324 88 15 chr4 160395135 160395465 -41932882 - L3 LINE CR1 -170 1407 1054 297 270 88 25 chr4 160395631 160395790 -41932557 - L1ME3A LINE L1 -23 6147 5979 246 175 18 0 chr4 160396571 160396628 -41931719 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 362 238 12 0 chr4 160398135 160398215 -41930132 - U2 snRNA snRNA -103 85 5 22 0 0 0 chr4 160399112 160399134 -41929213 + AT_rich Low_complexity Low_complexity 1 22 0 254 374 30 42 chr4 160399360 160399526 -41928821 - MIR3 SINE MIR -37 171 8 229 321 61 38 chr4 160400820 160400951 -41927396 + L2 LINE L2 3171 3304 -9 180 0 0 0 chr4 160400951 160400971 -41927376 + (A)n Simple_repeat Simple_repeat 1 20 0 2618 148 9 0 chr4 160401557 160401977 -41926370 - MSTA LTR MaLR -4 424 1 2480 51 0 10 chr4 160402055 160402367 -41925980 - AluY SINE Alu -2 309 1 21 0 0 0 chr4 160402860 160402881 -41925466 + AT_rich Low_complexity Low_complexity 1 21 0 1893 115 8 0 chr4 160404542 160404803 -41923544 + AluSx SINE Alu 36 298 -14 2166 103 0 38 chr4 160405715 160406035 -41922312 + AluY SINE Alu 1 308 -3 746 288 287 11 chr4 160408042 160408517 -41919830 - L2 LINE L2 -4 3309 2676 245 252 19 29 chr4 160409272 160409375 -41918972 + GA-rich Low_complexity Low_complexity 3 104 0 200 366 98 49 chr4 160409503 160409613 -41918734 + L2 LINE L2 2421 2524 -790 1749 158 3 34 chr4 160409613 160409910 -41918437 - AluJb SINE Alu -24 288 1 200 366 98 49 chr4 160409910 160410105 -41918242 + L2 LINE L2 2524 2741 -573 506 165 0 22 chr4 160410190 160410281 -41918066 + AluJb SINE Alu 205 293 -19 676 261 72 28 chr4 160410430 160410679 -41917668 + MIR SINE MIR 3 262 0 772 331 54 39 chr4 160410740 160411148 -41917199 - L2 LINE L2 0 3313 2900 1353 221 133 2 chr4 160411179 160411321 -41917026 - L2 LINE L2 -532 2782 2660 2216 84 0 0 chr4 160411321 160411608 -41916739 + AluY SINE Alu 16 302 -9 1353 221 133 2 chr4 160411608 160411864 -41916483 - L2 LINE L2 -654 2660 2332 350 275 147 77 chr4 160411877 160412150 -41916197 - MER102b DNA MER1_type -12 329 38 331 311 48 0 chr4 160412164 160412267 -41916080 + L2 LINE L2 3154 3261 -11 688 299 99 32 chr4 160412304 160412708 -41915639 + L1MC4a LINE L1 5525 5955 -166 258 350 157 16 chr4 160412862 160413101 -41915246 + L2 LINE L2 2736 3012 -260 186 260 20 0 chr4 160413396 160413446 -41914901 + MIR SINE MIR 92 142 -66 240 379 91 17 chr4 160413460 160413692 -41914655 - MIR SINE MIR -11 251 3 462 364 91 11 chr4 160413948 160414234 -41914113 - L3 LINE CR1 -13 1564 1256 1084 152 53 0 chr4 160414240 160414411 -41913936 - AluJb SINE Alu -132 180 1 1168 120 0 57 chr4 160415307 160415415 -41912932 - U2 snRNA snRNA -3 185 91 18861 48 20 2 chr4 160415415 160418581 -41909766 + L1PA5 LINE L1 2952 6151 -3 1168 120 0 57 chr4 160418581 160418664 -41909683 - U2 snRNA snRNA -97 91 5 2228 110 0 0 chr4 160418847 160419139 -41909208 - AluSg SINE Alu -18 292 1 2091 124 0 7 chr4 160419397 160419687 -41908660 + AluSx SINE Alu 1 288 -24 194 330 136 19 chr4 160419863 160419966 -41908381 - MIR3 SINE MIR -17 191 77 267 270 52 17 chr4 160419998 160420113 -41908234 + ERVL LTR ERVL 2667 2785 -2979 410 104 134 0 chr4 160420199 160420266 -41908081 - MADE1 DNA Mariner -2 78 3 2147 87 10 13 chr4 160423004 160423313 -41905034 + AluSc SINE Alu 1 308 -1 191 306 108 9 chr4 160423387 160423498 -41904849 - MIR3 SINE MIR -2 206 85 28 48 0 0 chr4 160425443 160425485 -41902862 + AT_rich Low_complexity Low_complexity 1 42 0 540 259 127 0 chr4 160425580 160425738 -41902609 - MIR SINE MIR -16 246 69 197 333 0 0 chr4 160425810 160425858 -41902489 + L2 LINE L2 3255 3302 -11 1203 112 0 18 chr4 160426864 160427034 -41901313 + FRAM SINE Alu 1 166 -10 22 35 0 0 chr4 160427917 160427946 -41900401 + AT_rich Low_complexity Low_complexity 1 29 0 282 322 8 34 chr4 160428203 160428321 -41900026 - MIR3 SINE MIR -88 120 6 30630 50 14 1 chr4 160429314 160434030 -41894317 + L1PA5 LINE L1 1393 6154 0 595 240 82 69 chr4 160434599 160434832 -41893515 - MLT1I LTR MaLR 0 409 174 1658 163 61 36 chr4 160435519 160435882 -41892465 + THE1C LTR MaLR 1 372 -3 22 0 0 0 chr4 160436268 160436290 -41892057 + AT_rich Low_complexity Low_complexity 1 22 0 282 29 0 0 chr4 160437037 160437072 -41891275 + (CA)n Simple_repeat Simple_repeat 2 36 0 380 325 84 9 chr4 160437161 160437484 -41890863 - HAL1 LINE L1 -806 1701 1355 961 263 15 23 chr4 160437694 160437953 -41890394 - MIR SINE MIR 0 262 6 23 0 0 0 chr4 160439373 160439396 -41888951 + AT_rich Low_complexity Low_complexity 1 23 0 1678 131 62 66 chr4 160439470 160439775 -41888572 + AluSp SINE Alu 1 304 -9 605 250 32 0 chr4 160439779 160439935 -41888412 - MIR SINE MIR 0 262 102 305 247 10 41 chr4 160440354 160440451 -41887896 - L1MC4 LINE L1 -1340 6702 6609 23 0 0 0 chr4 160440933 160440956 -41887391 + AT_rich Low_complexity Low_complexity 1 23 0 731 269 160 52 chr4 160441080 160441523 -41886824 - MLT1J LTR MaLR -13 498 8 250 326 0 22 chr4 160441523 160441615 -41886732 - MER5A DNA MER1_type -91 98 9 21 0 0 0 chr4 160441756 160441777 -41886570 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr4 160442125 160442152 -41886195 + (A)n Simple_repeat Simple_repeat 1 27 0 314 223 157 25 chr4 160442574 160442695 -41885652 - MIR SINE MIR -10 252 116 28 29 0 0 chr4 160443022 160443057 -41885290 + AT_rich Low_complexity Low_complexity 1 35 0 1620 202 3 0 chr4 160443944 160444226 -41884121 - AluJo SINE Alu -29 283 1 1655 180 77 9 chr4 160445219 160445398 -41882949 - MLT1A2 LTR MaLR 0 374 209 240 35 0 0 chr4 160445398 160445427 -41882920 + (GA)n Simple_repeat Simple_repeat 2 30 0 1655 180 77 9 chr4 160445427 160445597 -41882750 - MLT1A2 LTR MaLR -165 209 1 249 400 53 0 chr4 160445874 160446024 -41882323 + MIR SINE MIR 3 160 -102 311 340 50 0 chr4 160446229 160446329 -41882018 + L2 LINE L2 3163 3267 -5 27 0 0 0 chr4 160447398 160447425 -41880922 + AT_rich Low_complexity Low_complexity 1 27 0 237 291 116 74 chr4 160449288 160449762 -41878585 + L2 LINE L2 1888 2381 -933 336 248 157 33 chr4 160449835 160449988 -41878359 + LTR33A LTR ERVL 1 172 -351 973 198 12 82 chr4 160451802 160452034 -41876313 + MER8 DNA MER2_type 1 215 -24 1760 196 0 0 chr4 160452034 160452335 -41876012 + AluJo SINE Alu 2 302 -10 973 198 12 82 chr4 160452335 160452359 -41875988 + MER8 DNA MER2_type 215 239 0 200 200 22 0 chr4 160453471 160453516 -41874831 - MIR SINE MIR -29 233 188 * 219 370 0 0 chr4 160453504 160453585 -41874762 + L2 LINE L2 2932 3012 -260 224 301 108 24 chr4 160453699 160453782 -41874565 + L2 LINE L2 3147 3236 -36 2467 71 7 0 chr4 160454022 160454331 -41874016 - AluY SINE Alu 0 311 1 42 48 0 0 chr4 160455101 160455164 -41873183 + AT_rich Low_complexity Low_complexity 1 63 0 28 0 0 0 chr4 160455480 160455508 -41872839 + AT_rich Low_complexity Low_complexity 1 28 0 193 357 0 0 chr4 160457463 160457519 -41870828 + MIR SINE MIR 42 97 -165 2598 54 0 10 chr4 160460465 160460779 -41867568 + AluY SINE Alu 1 311 0 1834 90 24 55 chr4 160462267 160462582 -41865765 - AluSx SINE Alu 0 306 1 264 30 0 0 chr4 160462898 160462931 -41865416 + (TTTTTA)n Simple_repeat Simple_repeat 2 34 0 274 221 15 0 chr4 160463955 160464023 -41864324 + (TA)n Simple_repeat Simple_repeat 2 70 0 580 228 203 10 chr4 160465500 160465697 -41862650 - MIR SINE MIR 0 262 28 210 329 29 14 chr4 160465738 160465808 -41862539 - L2 LINE L2 -3 3269 3199 224 159 23 0 chr4 160466587 160466631 -41861716 + (TTG)n Simple_repeat Simple_repeat 2 46 0 380 317 79 12 chr4 160466753 160466926 -41861421 + MIR SINE MIR 17 201 -61 1383 71 38 9 chr4 160468408 160468620 -41859727 - L1MA5A LINE L1 -4 6293 6076 2253 104 7 0 chr4 160468986 160469283 -41859064 - AluSc SINE Alu -5 304 6 2192 115 51 28 chr4 160469564 160469920 -41858427 - THE1B LTR MaLR 0 364 1 30 69 0 0 chr4 160471190 160471248 -41857099 + AT_rich Low_complexity Low_complexity 1 58 0 1008 198 48 32 chr4 160471384 160471636 -41856711 + MIR SINE MIR 3 258 -4 334 356 76 58 chr4 160471771 160472100 -41856247 - L2 LINE L2 -4 3268 2934 673 310 155 27 chr4 160472185 160473093 -41855254 - L2 LINE L2 -492 2822 1745 1612 189 19 29 chr4 160473150 160473463 -41854884 - AluJb SINE Alu -2 310 1 189 0 0 0 chr4 160473552 160473573 -41854774 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 312 209 18 91 chr4 160474707 160474817 -41853530 + L1MC4 LINE L1 6602 6703 -1339 306 168 0 47 chr4 160474820 160474927 -41853420 + (TA)n Simple_repeat Simple_repeat 1 102 0 22 0 0 0 chr4 160476007 160476029 -41852318 + AT_rich Low_complexity Low_complexity 1 22 0 420 260 66 28 chr4 160476042 160476223 -41852124 - MER5A DNA MER1_type -1 188 1 2034 222 48 24 chr4 160477321 160477946 -41850401 - L1MC4 LINE L1 -5 8037 7398 2244 184 66 51 chr4 160477946 160478534 -41849813 + MER90 LTR ERV1 18 614 0 2672 225 38 40 chr4 160478537 160478984 -41849363 - L1MC4 LINE L1 -657 7385 6939 315 0 0 0 chr4 160478984 160479019 -41849328 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1334 145 111 34 chr4 160479021 160479283 -41849064 - AluJo SINE Alu -30 282 1 2672 225 38 40 chr4 160479283 160479668 -41848679 - L1MC4 LINE L1 -1104 6938 6551 360 64 0 0 chr4 160480445 160480492 -41847855 + (CA)n Simple_repeat Simple_repeat 2 48 0 1437 171 96 0 chr4 160480516 160480797 -41847550 - AluJo SINE Alu -4 308 1 541 76 13 0 chr4 160481478 160481557 -41846790 - MADE1 DNA Mariner 0 80 1 2211 107 3 0 chr4 160481764 160482055 -41846292 - AluSg SINE Alu -18 292 1 398 273 109 0 chr4 160483309 160483419 -41844928 + MIR SINE MIR 8 129 -133 236 269 75 32 chr4 160483750 160483843 -41844504 - L2 LINE L2 -49 3264 3168 215 59 0 29 chr4 160484077 160484111 -41844236 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr4 160484248 160484276 -41844071 + AT_rich Low_complexity Low_complexity 1 28 0 228 383 39 0 chr4 160484375 160484503 -41843844 + L3b LINE CR1 1105 1237 -346 380 268 232 0 chr4 160484631 160484769 -41843578 + MER5A DNA MER1_type 9 178 -11 366 295 33 16 chr4 160485301 160485423 -41842924 + MIR SINE MIR 135 258 -4 263 137 0 20 chr4 160485598 160485649 -41842698 + (CA)n Simple_repeat Simple_repeat 2 51 0 26 0 0 0 chr4 160485783 160485809 -41842538 + AT_rich Low_complexity Low_complexity 1 26 0 684 246 118 80 chr4 160487304 160487865 -41840482 - MER34C LTR ERV1 0 585 4 224 301 71 44 chr4 160488690 160488803 -41839544 - L2 LINE L2 -4 3268 3153 227 359 38 19 chr4 160488838 160488944 -41839403 - L2 LINE L2 -44 3228 3121 368 203 17 85 chr4 160490048 160490119 -41838228 - MER20B DNA MER1_type -611 172 111 2256 192 29 7 chr4 160490119 160490536 -41837811 - MSTB LTR MaLR 0 426 1 368 203 17 85 chr4 160490536 160490582 -41837765 - MER20B DNA MER1_type -672 111 63 23 0 0 0 chr4 160492049 160492072 -41836275 + AT_rich Low_complexity Low_complexity 1 23 0 1009 103 0 58 chr4 160492205 160492361 -41835986 - AluSg/x SINE Alu -12 300 154 525 143 0 10 chr4 160493235 160493333 -41835014 + MER53 DNA DNA 93 189 0 297 336 60 9 chr4 160493478 160493594 -41834753 + L2 LINE L2 3187 3308 -5 632 244 0 0 chr4 160495305 160495440 -41832907 + Tigger6a DNA MER2_type 2 136 -947 * 2186 153 73 42 chr4 160495433 160495884 -41832463 + Tigger6a DNA MER2_type 256 720 -363 2358 71 7 0 chr4 160496616 160496910 -41831437 + AluY SINE Alu 1 296 -15 192 304 54 54 chr4 160497570 160497682 -41830665 + L2 LINE L2 3186 3297 -16 5650 44 1 13 chr4 160498871 160499577 -41828770 - L1PA6 LINE L1 -4 6150 5453 272 298 83 14 chr4 160499579 160499868 -41828479 + L1ME LINE L1 1230 1538 -4858 6167 186 28 17 chr4 160499949 160501991 -41826356 - L1MC1 LINE L1 -1 6332 4263 1861 161 7 13 chr4 160501991 160502296 -41826051 - AluJo SINE Alu -9 303 1 6167 186 28 17 chr4 160502296 160502519 -41825828 - L1MC1 LINE L1 -2070 4263 4044 258 211 18 0 chr4 160502761 160502818 -41825529 - L1ME3 LINE L1 -7 6155 6098 234 122 0 0 chr4 160502834 160502875 -41825472 + LTR66 LTR ERVL 398 438 -172 441 269 104 15 chr4 160502986 160503187 -41825160 + L1ME LINE L1 3757 3975 -2240 354 268 122 48 chr4 160503258 160503732 -41824615 + L1ME LINE L1 5074 5626 -613 1974 183 15 0 chr4 160503732 160504071 -41824276 - MER2 DNA MER2_type 0 344 1 354 268 122 48 chr4 160504071 160504157 -41824190 + L1ME LINE L1 5626 5704 -535 2649 193 78 24 chr4 160504258 160504325 -41824022 - L1ME3 LINE L1 -462 5850 5788 186 43 0 0 chr4 160504325 160504348 -41823999 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 2649 193 78 24 chr4 160504348 160505373 -41822974 - L1ME3 LINE L1 -524 5788 4698 761 182 136 47 chr4 160507028 160507242 -41821105 + MIR SINE MIR 15 247 -15 300 365 62 14 chr4 160508219 160508427 -41819920 + L2 LINE L2 2818 3035 -237 448 256 159 67 chr4 160508864 160509223 -41819124 - MLT1L LTR MaLR -221 394 3 505 339 31 10 chr4 160509233 160509425 -41818922 + MIR SINE MIR 10 205 -57 473 202 106 0 chr4 160509446 160509550 -41818797 - L2 LINE L2 0 3313 3199 2442 76 0 16 chr4 160509647 160509962 -41818385 - AluY SINE Alu -1 310 1 443 252 84 0 chr4 160510035 160510142 -41818205 - L2 LINE L2 0 3313 3198 6567 149 8 5 chr4 160510331 160511478 -41816869 + L1MC1 LINE L1 5183 6331 -2 265 230 95 14 chr4 160511976 160512050 -41816297 + MLT1H LTR MaLR 96 175 -374 375 23 0 0 chr4 160513097 160513141 -41815206 + (TG)n Simple_repeat Simple_repeat 2 45 0 527 234 78 6 chr4 160513313 160513480 -41814867 + MER20B DNA MER1_type 603 781 -2 794 196 7 0 chr4 160513562 160513710 -41814637 - MER3 DNA MER1_type -54 155 7 230 253 108 0 chr4 160513851 160513934 -41814413 + L1ME LINE L1 5864 5955 -278 24 67 0 0 chr4 160514186 160514231 -41814116 + AT_rich Low_complexity Low_complexity 1 45 0 508 214 39 0 chr4 160514248 160514351 -41813996 + L2 LINE L2 3199 3305 -8 1645 163 3 62 chr4 160514459 160514766 -41813581 - AluJo SINE Alu -20 292 4 1893 271 150 17 chr4 160514787 160515827 -41812520 - L2 LINE L2 0 3313 2139 1132 157 0 0 chr4 160516307 160516479 -41811868 + FAM SINE Alu 2 173 -2 4224 141 36 5 chr4 160517342 160518095 -41810252 + L1MA4 LINE L1 5523 6298 -2 494 285 51 22 chr4 160518517 160518654 -41809693 - MIR3 SINE MIR -34 174 34 683 334 180 36 chr4 160521424 160522391 -41805956 - L2 LINE L2 0 3313 2227 941 220 52 81 chr4 160522398 160522450 -41805897 - Charlie4a DNA MER1_type -1478 483 431 2222 95 0 33 chr4 160522450 160522756 -41805591 - AluY SINE Alu -15 296 1 941 220 52 81 chr4 160522756 160523125 -41805222 - Charlie4a DNA MER1_type -1530 431 74 868 278 125 12 chr4 160523149 160523484 -41804863 - L2 LINE L2 -1816 1498 1126 1952 132 0 0 chr4 160524701 160524974 -41803373 + AluSx SINE Alu 1 273 -39 474 243 63 78 chr4 160524977 160525360 -41802987 + L1MC4 LINE L1 7666 8042 0 24 32 0 0 chr4 160525454 160525485 -41802862 + AT_rich Low_complexity Low_complexity 1 31 0 712 187 82 0 chr4 160625497 160625631 -41702716 - MER1B DNA MER1_type -152 145 1 312 120 0 0 chr4 160625755 160625805 -41702542 + (CA)n Simple_repeat Simple_repeat 1 50 0 1989 104 0 35 chr4 160627408 160627695 -41700652 - AluSx SINE Alu -13 299 23 1148 202 14 14 chr4 160627792 160628015 -41700332 - AluJo SINE Alu -25 287 65 180 152 0 0 chr4 160628157 160628190 -41700157 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 256 330 0 0 chr4 160628335 160628423 -41699924 + T-rich Low_complexity Low_complexity 1 88 0 217 346 10 10 chr4 160628443 160628547 -41699800 - L2 LINE L2 -1346 1968 1865 240 184 0 0 chr4 160629211 160629260 -41699087 + (TG)n Simple_repeat Simple_repeat 2 50 0 210 314 8 83 chr4 160629719 160629840 -41698507 - MIR SINE MIR -125 137 26 183 204 0 0 chr4 160630297 160630341 -41698006 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 236 246 0 0 chr4 160630349 160630410 -41697937 - LTR66 LTR ERVL -172 438 378 1841 188 39 0 chr4 160631530 160631865 -41696482 + MER7A DNA MER2_type 1 346 0 445 259 37 0 chr4 160634044 160634152 -41694195 - L2 LINE L2 -3 3310 3199 236 246 0 0 chr4 160635139 160635200 -41693147 + LTR66 LTR ERVL 378 438 -172 183 204 0 0 chr4 160635208 160635252 -41693095 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 582 308 5 40 chr4 160637296 160637520 -41690827 - L1M2c LINE L1 -4560 2608 2393 242 49 0 0 chr4 160637520 160637561 -41690786 - Alu SINE Alu 0 308 268 * 298 211 0 0 chr4 160637548 160637600 -41690747 - AluJ/monomer SINE Alu -250 53 2 7659 202 21 5 chr4 160637622 160639169 -41689178 - L1M2c LINE L1 -4768 2400 800 2174 188 3 0 chr4 160639175 160639552 -41688795 - L1M2c LINE L1 -6778 390 13 22 80 0 0 chr4 160639595 160639645 -41688702 + AT_rich Low_complexity Low_complexity 1 50 0 23 78 0 0 chr4 160640382 160640433 -41687914 + AT_rich Low_complexity Low_complexity 1 51 0 6966 152 6 7 chr4 160640433 160642025 -41686322 - L1MA3 LINE L1 0 6305 4715 390 21 0 0 chr4 160644048 160644095 -41684252 + (CA)n Simple_repeat Simple_repeat 2 48 0 590 157 0 10 chr4 160644228 160644330 -41684017 - AluS SINE Alu -211 102 2 1786 191 0 0 chr4 160644752 160645056 -41683291 - AluJb SINE Alu -8 304 1 281 258 22 11 chr4 160645450 160645539 -41682808 - MLT1J2 LTR MaLR -14 436 347 415 250 10 19 chr4 160645571 160645675 -41682672 - MLT1J2 LTR MaLR -281 169 67 193 316 35 0 chr4 160645742 160645799 -41682548 + L3 LINE CR1 1512 1570 -7 1022 149 0 6 chr4 160646762 160646930 -41681417 - AluSc SINE Alu -142 167 1 343 153 17 0 chr4 160646937 160646996 -41681351 + MLT1D LTR MaLR 446 505 0 231 211 96 58 chr4 160647283 160647387 -41680960 + L1ME3A LINE L1 5845 5952 -218 1391 207 50 7 chr4 160647388 160647668 -41680679 + AluJb SINE Alu 1 292 -20 2553 196 19 14 chr4 160647938 160648454 -41679893 + L1MC3 LINE L1 7259 7777 -8 1692 329 160 12 chr4 160648624 160649852 -41678495 + L2 LINE L2 1658 3063 -209 1262 231 78 22 chr4 160650000 160650359 -41677988 - L1MB8 LINE L1 -16 6162 5784 203 255 296 10 chr4 160650364 160650462 -41677885 + L2 LINE L2 3179 3304 -9 571 218 0 0 chr4 160650769 160650870 -41677477 - MER5A DNA MER1_type -80 109 9 358 230 31 87 chr4 160653073 160653234 -41675113 + L1MC5 LINE L1 5775 5926 -1882 316 271 71 18 chr4 160653241 160653411 -41674936 + L1ME3A LINE L1 4625 4803 -1343 1526 212 92 55 chr4 160653415 160654570 -41673777 + L1ME3A LINE L1 4892 6168 -2 870 237 14 68 chr4 160654576 160654956 -41673391 + L1MC5 LINE L1 6864 7198 -763 925 246 115 30 chr4 160655002 160655506 -41672841 + L1MC5 LINE L1 7311 7857 -104 270 319 38 47 chr4 160655895 160656108 -41672239 + L2 LINE L2 2004 2214 -1100 332 320 151 12 chr4 160656336 160656508 -41671839 + MER91A DNA MER1_type 1 196 0 442 204 9 9 chr4 160656725 160656833 -41671514 + GA-rich Low_complexity Low_complexity 1 108 0 560 297 84 29 chr4 160657800 160658143 -41670204 + L1ME2 LINE L1 44 405 -5991 609 262 68 40 chr4 160658411 160658735 -41669612 + L1ME2 LINE L1 694 1026 -5179 333 313 12 79 chr4 160658739 160659066 -41669281 + L1ME2 LINE L1 1003 1308 -4909 2127 113 3 13 chr4 160659066 160659377 -41668970 - AluSq SINE Alu -1 312 5 333 313 12 79 chr4 160659377 160659391 -41668956 + L1ME2 LINE L1 1308 1321 -4896 3597 252 114 22 chr4 160659504 160661541 -41666806 + L1ME2 LINE L1 2389 4599 -1616 264 120 60 0 chr4 160661641 160661691 -41666656 - THE1-int LTR MaLR -91 1489 1437 1025 123 39 0 chr4 160661691 160661846 -41666501 + THE1B LTR MaLR 202 362 -2 1756 246 49 68 chr4 160661846 160662367 -41665980 + L1ME2 LINE L1 4599 5105 -1110 1974 121 0 4 chr4 160662367 160662632 -41665715 - AluSx SINE Alu -48 264 1 1756 246 49 68 chr4 160662632 160662820 -41665527 + L1ME2 LINE L1 5105 5295 -920 * 2084 222 130 7 chr4 160662819 160663436 -41664911 + L1ME2 LINE L1 5549 6402 -1 2643 34 0 0 chr4 160664025 160664321 -41664026 - AluY SINE Alu -15 296 1 201 147 0 0 chr4 160667195 160667229 -41661118 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 1423 150 32 99 chr4 160668685 160668999 -41659348 - AluJo SINE Alu -19 293 1 469 268 223 45 chr4 160669007 160669549 -41658798 + L2 LINE L2 2670 3304 -9 2796 102 86 0 chr4 160669747 160670141 -41658206 - MSTA LTR MaLR 0 428 1 203 327 115 22 chr4 160670880 160671106 -41657241 + L2 LINE L2 1838 2084 -1230 414 238 22 111 chr4 160671182 160671302 -41657045 - MER5B DNA MER1_type -9 169 69 1999 94 79 4 chr4 160671302 160671579 -41656768 - AluSp SINE Alu -15 298 1 414 238 22 111 chr4 160671579 160671639 -41656708 - MER5B DNA MER1_type -109 69 5 244 335 125 13 chr4 160671702 160671854 -41656493 + L2 LINE L2 2553 2721 -593 328 254 119 30 chr4 160676886 160677020 -41651327 - L2 LINE L2 0 3313 3168 21 0 0 0 chr4 160677112 160677133 -41651214 + AT_rich Low_complexity Low_complexity 1 21 0 357 282 33 152 chr4 160677815 160678461 -41649886 - L2 LINE L2 0 3272 2698 1395 148 9 123 chr4 160678510 160678834 -41649513 + AluJo SINE Alu 22 308 -4 496 292 47 26 chr4 160679004 160679237 -41649110 + Charlie2 DNA MER1_type 1 238 -2544 589 257 127 7 chr4 160679295 160679571 -41648776 + Charlie2 DNA MER1_type 1863 2171 -691 2220 93 23 13 chr4 160679590 160679900 -41648447 - AluSp SINE Alu 0 313 1 3173 184 19 7 chr4 160680194 160680701 -41647646 + MLT2B3 LTR ERVL 1 516 -38 576 120 0 0 chr4 160680701 160680801 -41647546 + (TCTA)n Simple_repeat Simple_repeat 2 101 0 3173 184 19 7 chr4 160680801 160680835 -41647512 + MLT2B3 LTR ERVL 516 548 -6 2169 85 4 0 chr4 160681361 160681632 -41646715 - AluSq SINE Alu -6 307 36 812 294 95 21 chr4 160681665 160682002 -41646345 + MER20B DNA MER1_type 154 515 -268 593 200 50 42 chr4 160682212 160682437 -41645910 + MER20B DNA MER1_type 514 783 0 182 227 61 76 chr4 160682744 160682810 -41645537 + MIR SINE MIR 83 147 -61 473 178 34 93 chr4 160683345 160683463 -41644884 + MER53 DNA DNA 1 111 -78 423 0 0 0 chr4 160683784 160683831 -41644516 + (TC)n Simple_repeat Simple_repeat 1 47 0 423 0 0 0 chr4 160683830 160683877 -41644470 + (CA)n Simple_repeat Simple_repeat 1 47 0 234 245 15 113 chr4 160684932 160685136 -41643211 - Charlie7 DNA MER1_type -5 2607 2424 231 36 0 0 chr4 160686524 160686552 -41641795 + (A)n Simple_repeat Simple_repeat 1 28 0 23 33 0 0 chr4 160686838 160686868 -41641479 + AT_rich Low_complexity Low_complexity 1 30 0 378 184 78 134 chr4 160686869 160687086 -41641261 - L2 LINE L2 0 3313 3109 290 313 56 28 chr4 160687087 160687231 -41641116 - LTR33 LTR ERVL 0 521 374 551 194 35 42 chr4 160687391 160687535 -41640812 - LTR33 LTR ERVL -376 145 3 243 175 16 48 chr4 160688026 160688089 -41640258 + CT-rich Low_complexity Low_complexity 3 63 0 202 311 47 47 chr4 160688095 160688201 -41640146 - L2 LINE L2 -9 3263 3158 200 208 0 57 chr4 160688248 160688301 -41640046 - MIR SINE MIR 0 262 213 1528 195 18 102 chr4 160689171 160689426 -41638921 - L1MA9 LINE L1 -27 6987 6712 2097 123 17 0 chr4 160689426 160689719 -41638628 - AluSg SINE Alu -12 298 1 1528 195 18 102 chr4 160689719 160690148 -41638199 - L1MA9 LINE L1 -302 6712 2364 260 363 49 0 chr4 160690885 160690987 -41637360 - MIR SINE MIR 0 262 156 227 235 25 0 chr4 160692985 160693066 -41635281 + CT-rich Low_complexity Low_complexity 2 84 0 320 247 14 0 chr4 160693067 160693140 -41635207 - L2 LINE L2 -17 3296 3223 198 340 19 58 chr4 160693691 160693794 -41634553 - L2 LINE L2 -37 3235 3137 205 250 0 0 chr4 160694170 160694214 -41634133 - MIR SINE MIR -35 227 184 1030 278 70 62 chr4 160694239 160694839 -41633508 + MLT1L LTR MaLR 2 606 -9 383 242 55 0 chr4 160694863 160694954 -41633393 - MIR SINE MIR -136 126 31 22 35 0 0 chr4 160695387 160695416 -41632931 + AT_rich Low_complexity Low_complexity 1 29 0 534 314 12 0 chr4 160698002 160698171 -41630176 - L2 LINE L2 -1000 2314 2144 294 73 0 0 chr4 160698867 160698908 -41629439 + (TG)n Simple_repeat Simple_repeat 1 41 0 2381 22 0 0 chr4 160699018 160699296 -41629051 + L1PA2 LINE L1 5878 6155 0 31 0 0 0 chr4 160699296 160699327 -41629020 + AT_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr4 160699874 160699894 -41628453 + (TA)n Simple_repeat Simple_repeat 1 20 0 1589 196 32 16 chr4 160700084 160700395 -41627952 + MER58B DNA MER1_type 1 316 -25 2339 84 0 0 chr4 160700617 160700916 -41627431 + AluY SINE Alu 1 299 -12 311 241 195 23 chr4 160700917 160701224 -41627123 - L1ME4a LINE L1 -24 6097 5738 28 0 0 0 chr4 160701466 160701494 -41626853 + AT_rich Low_complexity Low_complexity 1 28 0 595 313 103 45 chr4 160701517 160702159 -41626188 - L1ME4a LINE L1 -782 5364 4686 968 289 57 46 chr4 160702679 160703317 -41625030 - L2 LINE L2 0 3313 2654 327 224 128 46 chr4 160703332 160703551 -41624796 - L2 LINE L2 -904 2410 2174 1164 174 124 159 chr4 160703551 160703619 -41624728 - MLT1D LTR MaLR 0 505 436 1776 137 4 26 chr4 160703619 160703890 -41624457 + AluSc SINE Alu 1 265 -44 4894 37 3 2 chr4 160703890 160704485 -41623862 + L1PA4 LINE L1 5558 6153 -2 1164 174 124 159 chr4 160704485 160704938 -41623409 - MLT1D LTR MaLR -67 438 1 655 261 118 35 chr4 160704941 160705228 -41623119 - L2 LINE L2 -1139 2175 1865 5212 133 7 5 chr4 160705922 160707079 -41621268 - L1PA16 LINE L1 -1 6165 4976 4617 185 12 2 chr4 160707133 160708032 -41620315 - L1 LINE L1 -1158 4988 4081 962 163 17 113 chr4 160709282 160709521 -41618826 - MER20B DNA MER1_type 0 219 4 339 189 74 30 chr4 160710031 160710164 -41618183 + MLT1J LTR MaLR 72 216 -234 470 273 121 10 chr4 160710625 160710823 -41617524 + MIR SINE MIR 6 225 -37 264 30 0 0 chr4 160710838 160710871 -41617476 + (TTCC)n Simple_repeat Simple_repeat 3 35 0 20153 157 45 12 chr4 160710971 160714336 -41614011 - L1 LINE L1 -797 6768 3097 1630 188 7 10 chr4 160714336 160714624 -41613723 + AluSx SINE Alu 1 287 -25 20153 157 45 12 chr4 160714624 160717371 -41610976 - L1 LINE L1 -4468 3097 444 1530 107 21 83 chr4 160718079 160718200 -41610147 + L1MA3 LINE L1 6012 6139 -166 890 150 0 0 chr4 160718200 160718333 -41610014 + FLAM_C SINE Alu 1 133 0 1530 107 21 83 chr4 160718333 160718500 -41609847 + L1MA3 LINE L1 6139 6282 -23 22 35 0 0 chr4 160718500 160718529 -41609818 + AT_rich Low_complexity Low_complexity 1 29 0 819 99 78 0 chr4 160718579 160718720 -41609627 + L1MA6 LINE L1 6148 6299 -1 2221 139 19 39 chr4 160718740 160719151 -41609196 + MER57A LTR ERV1 1 403 0 281 330 34 34 chr4 160719261 160719440 -41608907 + MIR SINE MIR 11 189 -73 1835 173 13 7 chr4 160719807 160720114 -41608233 + AluJo SINE Alu 1 309 -3 2017 101 0 31 chr4 160720189 160720475 -41607872 + AluSx SINE Alu 23 299 -13 290 352 56 12 chr4 160720951 160721113 -41607234 + LTR67 LTR ERVL 98 266 -291 692 236 79 22 chr4 160721346 160721575 -41606772 + MIR SINE MIR 13 254 -8 1059 296 29 9 chr4 160722310 160722729 -41605618 - L1M4 LINE L1 -1182 4964 4538 29 0 0 0 chr4 160723877 160723906 -41604441 + AT_rich Low_complexity Low_complexity 1 29 0 189 345 11 11 chr4 160723917 160724004 -41604343 + MIR SINE MIR 80 166 -96 366 302 62 39 chr4 160724249 160724428 -41603919 + LTR33 LTR ERVL 26 208 -313 1022 244 38 46 chr4 160724522 160724916 -41603431 + MLT1C LTR MaLR 6 396 -71 226 292 34 22 chr4 160725179 160725268 -41603079 + L1M4 LINE L1 716 805 -5737 * 270 265 59 29 chr4 160725245 160725347 -41603000 - L1ME LINE L1 -401 5720 5616 1343 183 12 63 chr4 160726018 160726352 -41601995 + MER33 DNA MER1_type 8 324 0 552 218 135 16 chr4 160726407 160726570 -41601777 + MER5A DNA MER1_type 4 189 0 847 129 0 8 chr4 160727133 160727257 -41601090 + FLAM_C SINE Alu 3 125 -8 24 0 0 0 chr4 160727258 160727282 -41601065 + AT_rich Low_complexity Low_complexity 1 24 0 448 290 111 21 chr4 160727590 160728024 -41600323 - L1ME LINE L1 -1317 4829 4357 434 317 49 26 chr4 160728327 160728664 -41599683 - L1ME LINE L1 -309 5812 5457 1160 229 28 3 chr4 160728970 160729254 -41599093 - Charlie4a DNA MER1_type -182 326 36 769 156 70 60 chr4 160729660 160729859 -41598488 - MER106A DNA MER1_type 0 236 36 838 303 68 41 chr4 160731474 160731783 -41596564 + L2 LINE L2 61 387 -2927 189 0 0 0 chr4 160731783 160731804 -41596543 + (CA)n Simple_repeat Simple_repeat 1 21 0 838 303 68 41 chr4 160731804 160731936 -41596411 + L2 LINE L2 387 514 -2800 207 0 0 0 chr4 160732358 160732381 -41595966 + (T)n Simple_repeat Simple_repeat 1 23 0 188 196 0 20 chr4 160732913 160732964 -41595383 + (TA)n Simple_repeat Simple_repeat 1 50 0 204 40 0 0 chr4 160733585 160733610 -41594737 + (CTG)n Simple_repeat Simple_repeat 2 26 0 900 338 72 17 chr4 160734257 160734401 -41593946 + L2 LINE L2 93 228 -3086 2592 110 28 28 chr4 160734401 160734829 -41593518 + MSTA LTR MaLR 1 428 0 900 338 72 17 chr4 160734829 160735642 -41592705 + L2 LINE L2 228 1202 -2112 760 324 76 16 chr4 160735663 160736086 -41592261 + L2 LINE L2 1442 1889 -1425 806 199 13 13 chr4 160736698 160736849 -41591498 - MLT1F1 LTR MaLR 0 567 417 294 237 53 38 chr4 160737299 160737430 -41590917 + Charlie7 DNA MER1_type 2449 2581 -31 2085 89 64 0 chr4 160737586 160737867 -41590480 + AluSp SINE Alu 1 299 -14 329 203 0 0 chr4 160738934 160738998 -41589349 + MER46C DNA MER2_type 261 324 -14 514 269 169 30 chr4 160738999 160739487 -41588860 + L2 LINE L2 2562 3142 -171 240 59 0 0 chr4 160739710 160739744 -41588603 + (TG)n Simple_repeat Simple_repeat 2 35 0 208 235 107 138 chr4 160740355 160740439 -41587908 + MIR SINE MIR 47 132 -130 2014 122 7 3 chr4 160740439 160740733 -41587614 + AluSg1 SINE Alu 3 297 -12 951 146 0 47 chr4 160740743 160740914 -41587433 + FRAM SINE Alu 2 164 -2 208 235 107 138 chr4 160740914 160741014 -41587333 + MIR SINE MIR 141 236 -26 2608 150 36 18 chr4 160742557 160743063 -41585284 - L1MA7 LINE L1 -25 6266 5752 2785 158 25 8 chr4 160743165 160743685 -41584662 - L1MA9 LINE L1 -233 6079 5551 2478 156 57 5 chr4 160743737 160744161 -41584186 - Tigger2 DNA MER2_type 0 2718 2273 458 147 0 0 chr4 160744152 160744220 -41584127 - Tigger2 DNA MER2_type -2650 68 1 * 534 115 0 11 chr4 160745534 160745621 -41582726 - L1PA16 LINE L1 -4 6162 6077 577 239 0 8 chr4 160745840 160745957 -41582390 - L2 LINE L2 -1 3312 3197 358 313 78 39 chr4 160746486 160746665 -41581682 - MIR3 SINE MIR -10 198 13 201 327 119 20 chr4 160746763 160746864 -41581483 - MIR SINE MIR -68 140 30 24 0 0 0 chr4 160747803 160747827 -41580520 + AT_rich Low_complexity Low_complexity 1 24 0 227 283 170 47 chr4 160748365 160748471 -41579876 - MIR SINE MIR -71 191 73 390 376 24 12 chr4 160748611 160748776 -41579571 - MER91A DNA MER1_type -29 167 1 276 206 142 32 chr4 160751168 160751323 -41577024 + Charlie7 DNA MER1_type 2441 2612 0 867 312 108 31 chr4 160752722 160752938 -41575409 + L1ME LINE L1 4179 4377 -1769 320 284 142 13 chr4 160752938 160753093 -41575254 + MER69A DNA AcHobo 2 176 -1 867 312 108 31 chr4 160753093 160753974 -41574373 + L1ME LINE L1 4377 5360 -786 316 320 77 0 chr4 160754017 160754170 -41574177 + L1ME LINE L1 5554 5714 -456 264 274 75 19 chr4 160754185 160754291 -41574056 + L1ME LINE L1 5777 5888 -282 396 0 0 0 chr4 160754852 160754896 -41573451 + (CA)n Simple_repeat Simple_repeat 2 45 0 271 366 89 0 chr4 160755427 160755550 -41572797 + L2 LINE L2 3139 3272 0 1614 185 51 102 chr4 160755677 160756275 -41572072 + L1MC5 LINE L1 6638 7159 -802 1936 130 19 54 chr4 160756275 160756645 -41571702 - MER46B DNA MER2_type -4 232 1 1614 185 51 102 chr4 160756645 160756726 -41571621 + L1MC5 LINE L1 7159 7243 -718 642 231 0 0 chr4 160756730 160756864 -41571483 + FRAM SINE Alu 12 145 -31 243 0 0 0 chr4 160756936 160756963 -41571384 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1560 239 65 23 chr4 160756969 160757535 -41570812 + L1MC5 LINE L1 7312 7901 -60 203 179 26 0 chr4 160757959 160757998 -41570349 + (TATG)n Simple_repeat Simple_repeat 4 43 0 5441 175 42 13 chr4 160759871 160761832 -41566515 - L1MB1 LINE L1 -1 6167 4148 269 169 17 0 chr4 160761953 160762012 -41566335 + (TA)n Simple_repeat Simple_repeat 1 60 0 22 35 0 0 chr4 160763161 160763190 -41565157 + AT_rich Low_complexity Low_complexity 1 29 0 2075 133 0 3 chr4 160763411 160763712 -41564635 - AluSx SINE Alu -12 300 1 937 214 56 32 chr4 160764839 160765091 -41563256 + MIR SINE MIR 5 262 0 21 36 0 0 chr4 160765594 160765622 -41562725 + AT_rich Low_complexity Low_complexity 1 28 0 283 154 19 0 chr4 160767273 160767325 -41561022 - HsTC2 DNA Tc2 0 1898 1846 626 242 6 22 chr4 160767630 160767808 -41560539 - FRAM SINE Alu 0 40 1 21 57 0 0 chr4 160768177 160768212 -41560135 + AT_rich Low_complexity Low_complexity 1 35 0 355 254 0 26 chr4 160768214 160768328 -41560019 - L1ME4a LINE L1 -33 6088 5978 191 368 37 31 chr4 160768332 160768495 -41559852 + L2 LINE L2 3140 3303 -10 1779 173 10 16 chr4 160768677 160768984 -41559363 + AluJo SINE Alu 1 305 -7 424 91 13 52 chr4 160769149 160769226 -41559121 - MER58B DNA MER1_type -8 333 260 290 227 0 15 chr4 160769335 160769401 -41558946 - ERVL LTR ERVL -4426 1338 1274 380 304 75 35 chr4 160769563 160769764 -41558583 - ERVL LTR ERVL -4657 1107 899 228 289 60 67 chr4 160770269 160770418 -41557929 - LTR50 LTR ERVL -111 684 537 753 254 54 5 chr4 160770463 160770668 -41557679 - LTR50 LTR ERVL -580 215 1 569 340 50 0 chr4 160770682 160770882 -41557465 - L2 LINE L2 -341 2973 2764 330 303 9 18 chr4 160771005 160771114 -41557233 + L2 LINE L2 3170 3277 -36 205 156 0 0 chr4 160771337 160771369 -41556978 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 256 330 0 0 chr4 160771515 160771603 -41556744 + T-rich Low_complexity Low_complexity 1 88 0 196 333 27 48 chr4 160771607 160771793 -41556554 - L2 LINE L2 -1330 1984 1803 240 184 0 0 chr4 160772396 160772445 -41555902 + (TG)n Simple_repeat Simple_repeat 2 50 0 244 258 8 42 chr4 160773077 160773197 -41555150 + (TATAA)n Simple_repeat Simple_repeat 5 120 0 219 378 54 0 chr4 160773223 160773297 -41555050 + L2 LINE L2 3156 3233 -39 36 0 0 0 chr4 160775346 160775382 -41552965 + AT_rich Low_complexity Low_complexity 1 36 0 719 104 38 0 chr4 160775756 160775899 -41552448 - AluSg/x SINE Alu 0 316 170 22 0 0 0 chr4 160775906 160775928 -41552419 + AT_rich Low_complexity Low_complexity 1 22 0 259 290 28 9 chr4 160776221 160776328 -41552019 + L2 LINE L2 2152 2260 -1054 757 205 109 55 chr4 160776335 160776647 -41551700 - LTR37A LTR ERV1 -1 425 97 585 206 74 21 chr4 160776931 160777120 -41551227 - Charlie2 DNA MER1_type -16 2846 2648 2156 122 0 0 chr4 160777141 160777437 -41550910 + AluSq SINE Alu 3 298 -15 372 22 0 0 chr4 160777439 160777484 -41550863 + (TG)n Simple_repeat Simple_repeat 2 46 0 230 217 17 0 chr4 160777514 160777574 -41550773 + L1MC4 LINE L1 6649 6709 -1333 251 143 0 18 chr4 160777574 160777630 -41550717 + (TA)n Simple_repeat Simple_repeat 2 56 0 570 255 111 0 chr4 160778212 160778455 -41549892 - Charlie2 DNA MER1_type -251 2611 2342 266 347 112 49 chr4 160778939 160779495 -41548852 - L2 LINE L2 -531 2783 2193 186 43 0 0 chr4 160780623 160780646 -41547701 + (TCCA)n Simple_repeat Simple_repeat 1 23 0 891 310 16 4 chr4 160781504 160781749 -41546598 + MIR SINE MIR 14 261 -1 1871 141 18 0 chr4 160781813 160782121 -41546226 + AluJb SINE Alu 1 313 0 23 68 0 0 chr4 160782400 160782444 -41545903 + AT_rich Low_complexity Low_complexity 1 44 0 628 164 23 31 chr4 160782444 160782572 -41545775 + FLAM_C SINE Alu 1 127 -16 23 54 0 0 chr4 160782685 160782722 -41545625 + AT_rich Low_complexity Low_complexity 1 37 0 2637 272 53 36 chr4 160783961 160785076 -41543271 - L1ME LINE L1 -4982 1088 3 224 253 98 116 chr4 160785766 160785953 -41542394 + L2 LINE L2 2699 2930 -342 1636 208 19 32 chr4 160785953 160786332 -41542015 + MLT1A2 LTR MaLR 1 374 0 224 253 98 116 chr4 160786332 160786464 -41541883 + L2 LINE L2 2930 3063 -209 345 262 103 56 chr4 160786634 160786760 -41541587 + L2 LINE L2 3176 3307 -6 371 253 259 18 chr4 160787443 160787613 -41540734 + MIR SINE MIR 49 259 -3 25 65 0 0 chr4 160788310 160788356 -41539991 + AT_rich Low_complexity Low_complexity 1 46 0 719 297 9 14 chr4 160788491 160788710 -41539637 - MIR SINE MIR -5 257 40 443 304 88 0 chr4 160788712 160788929 -41539418 - LTR16A LTR ERVL -7 443 208 1168 219 65 80 chr4 160789073 160789488 -41538859 + MLT1C LTR MaLR 59 467 0 203 327 133 18 chr4 160790229 160790342 -41538005 - MIR3 SINE MIR -22 186 61 340 136 0 25 chr4 160790527 160790608 -41537739 + (TG)n Simple_repeat Simple_repeat 2 80 0 186 43 0 0 chr4 160790914 160790937 -41537410 + (TTTAA)n Simple_repeat Simple_repeat 4 26 0 289 341 173 0 chr4 160792982 160793161 -41535186 - L2 LINE L2 -397 2917 2708 22 0 0 0 chr4 160793384 160793406 -41534941 + AT_rich Low_complexity Low_complexity 1 22 0 969 121 0 0 chr4 160793606 160793755 -41534592 - L1MA9 LINE L1 -1 6311 6163 256 69 69 121 chr4 160793841 160793899 -41534448 + L2 LINE L2 3255 3309 -4 21 36 0 0 chr4 160793976 160794004 -41534343 + AT_rich Low_complexity Low_complexity 1 28 0 1370 233 73 3 chr4 160796085 160796428 -41531919 + LTR40c LTR ERVL 35 401 -64 460 315 33 6 chr4 160796431 160796612 -41531735 - L1MEc LINE L1 -6176 220 35 30 0 0 0 chr4 160796617 160796647 -41531700 + AT_rich Low_complexity Low_complexity 1 30 0 1361 209 173 25 chr4 160796882 160797011 -41531336 + MLT1F1 LTR MaLR 1 110 -457 2165 129 0 0 chr4 160797011 160797306 -41531041 - AluSx SINE Alu -17 295 1 1361 209 173 25 chr4 160797306 160797664 -41530683 + MLT1F1 LTR MaLR 110 567 0 467 82 14 0 chr4 160798936 160799009 -41529338 + (GA)n Simple_repeat Simple_repeat 1 74 0 32 26 0 0 chr4 160799889 160799928 -41528419 + AT_rich Low_complexity Low_complexity 1 39 0 2821 130 35 5 chr4 160801127 160801558 -41526789 - MER83 LTR ERV1 -4 444 1 489 268 8 16 chr4 160801816 160801943 -41526404 - MIR SINE MIR -79 183 58 528 77 0 0 chr4 160802538 160802616 -41525731 + (GA)n Simple_repeat Simple_repeat 1 78 0 308 228 44 89 chr4 160802669 160802827 -41525520 - LTR33A LTR ERVL -370 153 3 899 155 36 57 chr4 160804451 160804644 -41523703 + MER5A DNA MER1_type 1 189 0 6602 132 40 15 chr4 160805246 160806435 -41521912 - Tigger3b DNA MER2_type -1 1230 13 3979 126 29 2 chr4 160806444 160807062 -41521285 - MER41B LTR ERV1 0 635 1 23 0 0 0 chr4 160807195 160807218 -41521129 + AT_rich Low_complexity Low_complexity 1 23 0 184 410 110 0 chr4 160807422 160807649 -41520698 - L2 LINE L2 -570 2744 2493 1905 163 3 0 chr4 160807880 160808187 -41520160 + AluJb SINE Alu 1 308 -4 400 343 28 11 chr4 160808187 160808365 -41519982 - MER5A DNA MER1_type -4 185 5 449 235 8 0 chr4 160808588 160808707 -41519640 - L1MEd LINE L1 -3864 2265 2146 398 280 92 60 chr4 160808739 160809053 -41519294 - L1MEd LINE L1 -5346 773 450 333 100 0 0 chr4 160810020 160810070 -41518277 + (TG)n Simple_repeat Simple_repeat 1 50 0 2112 129 33 24 chr4 160810194 160810528 -41517819 + MER1B DNA MER1_type 1 337 0 258 326 65 38 chr4 160811903 160812087 -41516260 - MIR SINE MIR -15 247 59 1437 147 108 20 chr4 160812617 160813035 -41515312 + LTR54 LTR ERV1 1 496 -2 438 304 76 0 chr4 160813057 160813228 -41515119 - MIR SINE MIR -70 192 9 1350 200 122 28 chr4 160813246 160813660 -41514687 - MLT1C LTR MaLR -10 457 1 312 308 28 65 chr4 160814485 160814768 -41513579 - MIR SINE MIR -6 256 20 1567 174 99 14 chr4 160815891 160816236 -41512111 + MLT1A2 LTR MaLR 1 374 0 515 242 53 23 chr4 160816313 160816445 -41511902 - L2 LINE L2 -1 3271 3136 511 264 155 0 chr4 160816716 160816993 -41511354 - LTR50 LTR ERVL -1 794 475 313 255 59 0 chr4 160817519 160817621 -41510726 + LTR33A LTR ERVL 416 523 0 13577 128 32 17 chr4 160817745 160820088 -41508259 + Tigger1 DNA MER2_type 27 2405 -13 27 0 0 0 chr4 160820175 160820202 -41508145 + AT_rich Low_complexity Low_complexity 1 27 0 228 200 0 0 chr4 160820468 160820523 -41507824 + (TA)n Simple_repeat Simple_repeat 1 55 0 2382 69 0 3 chr4 160820870 160821173 -41507174 - AluY SINE Alu -7 304 3 30 69 0 0 chr4 160822211 160822269 -41506078 + AT_rich Low_complexity Low_complexity 1 58 0 2358 88 3 0 chr4 160822515 160822810 -41505537 + AluSg SINE Alu 1 296 -14 1888 185 88 20 chr4 160822819 160823263 -41505084 + MLT2B1 LTR ERVL 1 474 -46 251 100 25 0 chr4 160823340 160823380 -41504967 + MLT2B1 LTR ERVL 474 514 -1 302 251 25 38 chr4 160823435 160823603 -41504744 - L1MC/D LINE L1 -330 5836 5723 23 54 0 0 chr4 160823984 160824021 -41504326 + AT_rich Low_complexity Low_complexity 1 37 0 221 318 60 86 chr4 160824125 160824226 -41504121 - L2 LINE L2 -177 3095 2993 2079 123 11 0 chr4 160824226 160824529 -41503818 + AluSg SINE Alu 1 306 0 221 318 60 86 chr4 160824529 160824804 -41503543 - L2 LINE L2 -279 2993 2734 318 355 111 27 chr4 160825120 160825463 -41502884 + L3 LINE CR1 850 1248 -329 355 178 14 0 chr4 160825463 160825536 -41502811 + L1MA9 LINE L1 6239 6312 0 318 355 111 27 chr4 160825536 160825680 -41502667 + L3 LINE CR1 1248 1378 -199 21 0 0 0 chr4 160825962 160825983 -41502364 + AT_rich Low_complexity Low_complexity 1 21 0 1711 198 70 58 chr4 160826529 160826566 -41501781 - MLT2B1 LTR ERVL 0 520 485 189 107 0 0 chr4 160826566 160826594 -41501753 + (TG)n Simple_repeat Simple_repeat 1 28 0 1711 198 70 58 chr4 160826594 160827070 -41501277 - MLT2B1 LTR ERVL -35 485 1 308 321 116 24 chr4 160827705 160827998 -41500349 - L1MC4a LINE L1 -1878 5930 5611 2138 136 0 0 chr4 160828479 160828773 -41499574 - AluSx SINE Alu -18 294 1 241 383 37 12 chr4 160828934 160829096 -41499251 + MIR SINE MIR 45 210 -52 1337 178 0 0 chr4 160830123 160830331 -41498016 + AluJo SINE Alu 87 294 -18 219 139 0 0 chr4 160830424 160830460 -41497887 + (TG)n Simple_repeat Simple_repeat 2 37 0 675 305 82 20 chr4 160830740 160831130 -41497217 - LTR16B LTR ERVL 0 464 51 1938 118 0 0 chr4 160831924 160832217 -41496130 - AluSx SINE Alu 0 315 23 6440 178 63 12 chr4 160832514 160833732 -41494615 - ERVL LTR ERVL -1596 4168 2879 2180 107 37 3 chr4 160833732 160834030 -41494317 - AluSq SINE Alu -5 308 1 6440 178 63 12 chr4 160834030 160834107 -41494240 - ERVL LTR ERVL -2885 2879 2807 1989 131 14 7 chr4 160834908 160835199 -41493148 + AluJb SINE Alu 1 293 -19 286 309 116 83 chr4 160835531 160835903 -41492444 - L2 LINE L2 -45 3227 2844 660 260 46 46 chr4 160837073 160837268 -41491079 - L1MD2 LINE L1 -3 6356 6162 2018 148 7 0 chr4 160837268 160837571 -41490776 - AluSx SINE Alu -7 305 1 660 260 46 46 chr4 160837571 160837603 -41490744 - L1MD2 LINE L1 -197 6162 6131 258 116 0 0 chr4 160837603 160837646 -41490701 + (TG)n Simple_repeat Simple_repeat 2 44 0 660 260 46 46 chr4 160837646 160837698 -41490649 - L1MD2 LINE L1 -227 6132 6076 774 207 67 16 chr4 160837911 160838104 -41490243 + MIR SINE MIR 22 224 -38 1881 164 13 7 chr4 160838743 160839053 -41489294 - AluJo SINE Alu 0 312 1 3072 265 108 66 chr4 160839299 160841393 -41486954 - L2 LINE L2 0 3313 1124 1714 174 80 26 chr4 160891618 160891829 -41436518 + Charlie1b DNA MER1_type 39 237 -2524 5124 116 8 28 chr4 160891829 160892625 -41435722 - LTR17 LTR ERV1 0 780 1 1714 174 80 26 chr4 160892625 160892873 -41435474 + Charlie1b DNA MER1_type 237 523 0 231 306 71 10 chr4 160892891 160892989 -41435358 - MIR SINE MIR -73 135 32 1372 169 23 57 chr4 160893688 160894189 -41434158 + MSTA LTR MaLR 1 428 0 198 179 0 0 chr4 160894720 160894776 -41433571 + (CA)n Simple_repeat Simple_repeat 2 57 0 23 33 0 0 chr4 160897694 160897724 -41430623 + AT_rich Low_complexity Low_complexity 1 30 0 686 214 71 31 chr4 160899516 160899641 -41428706 + MER3 DNA MER1_type 5 142 -67 2629 121 5 49 chr4 160899641 160900089 -41428258 + MSTC LTR MaLR 1 428 0 686 214 71 31 chr4 160900089 160900159 -41428188 + MER3 DNA MER1_type 142 208 -1 5267 24 0 0 chr4 160900410 160901043 -41427304 + L1PA4 LINE L1 5453 6085 -70 207 0 0 0 chr4 160901647 160901670 -41426677 + (GA)n Simple_repeat Simple_repeat 1 23 0 27 0 0 0 chr4 160902134 160902161 -41426186 + AT_rich Low_complexity Low_complexity 1 27 0 191 264 50 91 chr4 160902194 160902315 -41426032 - L3b LINE CR1 -81 1502 1387 211 340 107 25 chr4 160902465 160902624 -41425723 + MIR SINE MIR 29 200 -62 314 221 12 81 chr4 160902860 160903032 -41425315 - L1MC4a LINE L1 -1930 5878 5719 2033 151 3 0 chr4 160903032 160903331 -41425016 + AluSx SINE Alu 1 300 -12 1182 109 12 6 chr4 160903759 160903924 -41424423 - AluSq SINE Alu -147 166 1 480 244 86 111 chr4 160903925 160904670 -41423677 - HAL1 LINE L1 -1011 1496 771 1132 145 70 13 chr4 160905052 160905279 -41423068 - L1MC1 LINE L1 -1 6332 6093 240 346 45 15 chr4 160905379 160905512 -41422835 - HAL1 LINE L1 -2370 137 1 213 267 0 0 chr4 160906823 160906868 -41421479 + MIR SINE MIR 56 100 -162 344 275 54 27 chr4 160909108 160909257 -41419090 + L1M4 LINE L1 1 153 -5738 562 291 184 9 chr4 160910810 160911033 -41417314 - MIR SINE MIR 0 262 1 1962 163 70 3 chr4 160911113 160911500 -41416847 - MSTB LTR MaLR -3 423 11 461 137 0 11 chr4 160912319 160912414 -41415933 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 342 286 73 23 chr4 160912486 160912923 -41415424 + L1M4 LINE L1 4082 4540 -1430 222 299 0 41 chr4 160913217 160913314 -41415033 - L2 LINE L2 -1227 2087 1995 495 133 22 0 chr4 160914312 160914402 -41413945 - L1MA4 LINE L1 -706 5594 5503 * 2982 108 33 23 chr4 160914394 160915070 -41413277 + L1MA4 LINE L1 5586 6297 0 208 232 11 53 chr4 160915124 160915219 -41413128 + A-rich Low_complexity Low_complexity 2 92 0 241 153 17 17 chr4 160915266 160915325 -41413022 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 448 307 99 88 chr4 160915730 160916277 -41412070 + L1M4 LINE L1 4284 4836 -1310 241 288 14 0 chr4 160916369 160916442 -41411905 + GA-rich Low_complexity Low_complexity 5 78 0 895 153 0 13 chr4 160916668 160916818 -41411529 - MER4B LTR ERV1 0 610 463 1434 147 64 15 chr4 160916918 160917184 -41411163 + AluJb SINE Alu 24 302 -10 250 288 27 0 chr4 160917996 160918069 -41410278 + MIR3 SINE MIR 132 206 -2 9241 44 2 2 chr4 160918296 160919510 -41408837 - L1P LINE L1 -1236 4910 3696 1914 178 8 20 chr4 160920285 160920683 -41407664 + L1MC1 LINE L1 5941 6333 0 789 193 36 8 chr4 160921858 160922020 -41406327 + MER5B DNA MER1_type 1 175 -14 722 241 11 5 chr4 160922437 160922624 -41405723 + Charlie2 DNA MER1_type 34 221 -2561 215 211 19 0 chr4 160922624 160922658 -41405689 + A-rich Low_complexity Low_complexity 5 42 -15 2288 108 10 0 chr4 160922658 160922965 -41405382 + AluSx SINE Alu 1 310 -2 215 211 19 0 chr4 160922965 160922982 -41405365 + A-rich Low_complexity Low_complexity 42 57 0 566 259 84 24 chr4 160923200 160923366 -41404981 + MER5B DNA MER1_type 1 176 -2 298 151 31 151 chr4 160923441 160923600 -41404747 + Charlie2 DNA MER1_type 2442 2581 -281 35 71 0 0 chr4 160923849 160923919 -41404428 + AT_rich Low_complexity Low_complexity 1 70 0 994 279 43 24 chr4 160923923 160924292 -41404055 - L1MEc LINE L1 -5649 747 372 21 36 0 0 chr4 160924387 160924415 -41403932 + AT_rich Low_complexity Low_complexity 1 28 0 383 235 17 9 chr4 160924429 160924544 -41403803 + Charlie1 DNA MER1_type 2646 2761 0 1907 96 0 121 chr4 160924667 160924999 -41403348 - AluSp SINE Alu -10 293 2 294 308 174 6 chr4 160925036 160925208 -41403139 - MIR SINE MIR -50 212 12 312 185 15 0 chr4 160926367 160926432 -41401915 + MER81 DNA DNA 48 113 -1 654 109 175 15 chr4 160926865 160927002 -41401345 - MSTA LTR MaLR -269 159 1 243 241 89 38 chr4 160927213 160927292 -41401055 + L2 LINE L2 3231 3313 0 228 284 63 0 chr4 160927296 160927391 -41400956 + L1MDb LINE L1 1195 1295 -5114 2586 247 113 31 chr4 160928334 160928450 -41399897 + L1M4c LINE L1 805 910 -5472 2093 138 0 0 chr4 160928450 160928748 -41399599 + AluSx SINE Alu 3 300 -12 2586 247 113 31 chr4 160928748 160930229 -41398118 + L1M4c LINE L1 910 2661 -3721 273 266 18 18 chr4 160930229 160930342 -41398005 + L1M4c LINE L1 3033 3145 -3237 1155 208 80 45 chr4 160932187 160932523 -41395824 - MLT1A1 LTR MaLR -17 348 1 3020 205 27 13 chr4 160932523 160933153 -41395194 - MLT1A1-int LTR MaLR 0 1735 1097 1158 104 30 15 chr4 160933156 160933358 -41394989 - MER41A LTR ERV1 0 554 350 2046 90 0 0 chr4 160933935 160934191 -41394156 + AluSc SINE Alu 33 288 -21 185 275 73 55 chr4 160935083 160935192 -41393155 + MIR3 SINE MIR 15 125 -83 237 229 181 0 chr4 160935319 160935402 -41392945 - MIR SINE MIR -117 145 48 1807 178 3 31 chr4 160935403 160935723 -41392624 - AluJb SINE Alu -1 311 1 2506 117 8 13 chr4 160935986 160936363 -41391984 - THE1C LTR MaLR 0 375 1 248 308 15 0 chr4 160936417 160936482 -41391865 - MER5A DNA MER1_type -6 183 118 2324 109 3 0 chr4 160936970 160937272 -41391075 - AluSq SINE Alu -3 310 8 312 48 0 0 chr4 160938089 160938131 -41390216 + (CA)n Simple_repeat Simple_repeat 1 42 0 2159 107 0 3 chr4 160938411 160938710 -41389637 - AluSg SINE Alu -1 309 12 19663 72 42 2 chr4 160938912 160941668 -41386679 + L1M2 LINE L1 2491 5439 -1409 2109 123 10 10 chr4 160942081 160942390 -41385957 + AluSx SINE Alu 3 311 -1 455 212 34 42 chr4 160942390 160942508 -41385839 - MER5B DNA MER1_type -32 146 30 4987 45 5 2 chr4 160942512 160943129 -41385218 + L1PA5 LINE L1 5535 6153 -1 255 21 85 0 chr4 160943136 160943183 -41385164 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 216 200 0 0 chr4 160943232 160943277 -41385070 + A-rich Low_complexity Low_complexity 2 46 0 568 240 10 48 chr4 160943279 160943473 -41384874 + L1ME LINE L1 5288 5452 -718 2202 95 3 16 chr4 160943473 160943777 -41384570 + AluSg SINE Alu 1 300 -10 568 240 10 48 chr4 160943777 160943863 -41384484 + L1ME LINE L1 5452 5540 -630 24 32 0 0 chr4 160944926 160944957 -41383390 + AT_rich Low_complexity Low_complexity 1 31 0 381 216 11 11 chr4 160945046 160945134 -41383213 + MIR SINE MIR 64 151 -111 638 131 0 0 chr4 160945134 160945233 -41383114 + L1P LINE L1 2 100 -6046 * 4017 61 9 2 chr4 160945229 160945786 -41382561 + L1P LINE L1 623 1183 -4963 2063 93 18 7 chr4 160946871 160947191 -41381156 + AluSc SINE Alu 1 323 0 2120 226 141 15 chr4 160947573 160947882 -41380465 - L1MC4a LINE L1 -389 7419 7150 2176 118 52 9 chr4 160947882 160948231 -41380116 + THE1B LTR MaLR 1 364 0 2120 226 141 15 chr4 160948231 160948716 -41379631 - L1MC4a LINE L1 -658 7150 6551 * 6092 237 38 19 chr4 160948715 160949963 -41378384 + L1PA13 LINE L1 1996 3219 -3948 2151 86 24 3 chr4 160949963 160950255 -41378092 + AluY SINE Alu 3 300 -11 6092 237 38 19 chr4 160950255 160951531 -41376816 + L1PA13 LINE L1 3219 4643 -2524 2160 135 33 33 chr4 160951531 160951895 -41376452 - THE1B LTR MaLR 0 364 1 6092 237 38 19 chr4 160951895 160951956 -41376391 + L1PA13 LINE L1 4643 4701 -2466 328 256 131 25 chr4 160953643 160953766 -41374581 - L1MC4 LINE L1 -1 8041 7932 192 40 0 0 chr4 160953766 160953791 -41374556 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 328 256 131 25 chr4 160953791 160953866 -41374481 - L1MC4 LINE L1 -110 7932 7822 731 62 0 0 chr4 160954269 160954365 -41373982 - L1P LINE L1 -1583 4563 4468 7463 32 2 0 chr4 160954365 160955876 -41372471 + L1PA4 LINE L1 4641 6153 -2 344 194 112 10 chr4 160955877 160955975 -41372372 + L1M4 LINE L1 3155 3262 -2884 1939 133 26 7 chr4 160955976 160956278 -41372069 + AluSx SINE Alu 1 308 -4 294 277 157 20 chr4 160956501 160956750 -41371597 + HAL1 LINE L1 2225 2507 0 4406 129 108 4 chr4 160956832 160958228 -41370119 + L1PA16 LINE L1 4684 6165 -1 221 247 93 52 chr4 160958410 160958507 -41369840 + MIR SINE MIR 41 141 -121 255 326 11 11 chr4 160958673 160958762 -41369585 + MIR SINE MIR 51 139 -123 2357 96 0 0 chr4 160958875 160959176 -41369171 - AluSq SINE Alu -12 301 1 28 29 0 0 chr4 160959420 160959455 -41368892 + AT_rich Low_complexity Low_complexity 1 35 0 3432 95 40 52 chr4 160959530 160960130 -41368217 - L1MA3 LINE L1 0 6305 5713 216 184 0 46 chr4 160960168 160960255 -41368092 + GA-rich Low_complexity Low_complexity 3 85 0 212 323 97 11 chr4 160962292 160962385 -41365962 - MIR SINE MIR -115 147 47 207 0 0 0 chr4 160963068 160963091 -41365256 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 363 204 168 0 chr4 160963224 160963337 -41365010 - MIR SINE MIR 0 262 131 12649 105 10 32 chr4 160963638 160965718 -41362629 - L1P3 LINE L1 -4380 2081 1 1872 180 22 83 chr4 160965880 160966374 -41361973 - MLT1C LTR MaLR -3 464 1 918 246 167 34 chr4 160966935 160967313 -41361034 + MLT1J2 LTR MaLR 13 440 -10 193 301 184 0 chr4 160967553 160967656 -41360691 + L2 LINE L2 3180 3301 -12 570 255 60 75 chr4 160968423 160968807 -41359540 + MLT1K LTR MaLR 203 580 -8 1296 56 0 0 chr4 160969365 160969526 -41358821 - L1PA5 LINE L1 -1518 4628 4468 7290 44 1 2 chr4 160969526 160971035 -41357312 + L1PA5 LINE L1 4641 6146 -8 44 35 0 0 chr4 160971986 160972044 -41356303 + AT_rich Low_complexity Low_complexity 1 58 0 216 233 0 0 chr4 160973348 160973391 -41354956 - L2 LINE L2 -19 3294 3252 5243 155 29 58 chr4 160973506 160973722 -41354625 + L1MA5A LINE L1 4641 4862 -1435 886 121 8 0 chr4 160973722 160973846 -41354501 - AluJb SINE Alu -187 125 1 5243 155 29 58 chr4 160973846 160974539 -41353808 + L1MA5A LINE L1 4862 5573 -724 1700 152 27 20 chr4 160974539 160974835 -41353512 + AluSc SINE Alu 4 301 -8 5243 155 29 58 chr4 160974835 160975108 -41353239 + L1MA5A LINE L1 5573 5852 -445 204 40 0 0 chr4 160975108 160975133 -41353214 + (CA)n Simple_repeat Simple_repeat 2 26 0 5243 155 29 58 chr4 160975133 160975614 -41352733 + L1MA5A LINE L1 5852 6294 -3 514 317 132 38 chr4 160977855 160978540 -41349807 + L2 LINE L2 2486 3233 -39 296 357 24 8 chr4 160978538 160978664 -41349683 - MIR SINE MIR -109 153 26 * 251 289 0 22 chr4 160978694 160978784 -41349563 + L1MC4 LINE L1 6614 6701 -1341 298 280 0 0 chr4 160978785 160978878 -41349469 + L1MC4 LINE L1 6615 6707 -1335 1043 206 166 63 chr4 160978938 160979340 -41349007 - THE1C LTR MaLR 0 375 1 197 254 55 0 chr4 160979413 160979468 -41348879 + L2 LINE L2 3179 3236 -77 7016 30 2 0 chr4 160980014 160980848 -41347499 + L1PA4 LINE L1 5318 6153 -2 249 249 91 69 chr4 160980884 160981289 -41347058 + L1ME4a LINE L1 1141 1554 -4862 24 32 0 0 chr4 160981595 160981626 -41346721 + AT_rich Low_complexity Low_complexity 1 31 0 1145 131 0 0 chr4 160981901 160982069 -41346278 + MER4A LTR ERV1 471 638 -26 308 359 61 0 chr4 160982114 160982326 -41346021 + L1ME4a LINE L1 2255 2479 -3947 216 0 0 0 chr4 160982343 160982367 -41345980 + (TG)n Simple_repeat Simple_repeat 1 24 0 516 343 64 10 chr4 160982449 160982672 -41345675 + L1ME4a LINE L1 2529 2783 -3643 216 67 0 0 chr4 160982672 160982702 -41345645 + (CA)n Simple_repeat Simple_repeat 1 30 0 516 343 64 10 chr4 160982702 160982866 -41345481 + L1ME4a LINE L1 2783 2937 -3489 307 284 77 31 chr4 160982867 160983128 -41345219 + L1ME4a LINE L1 3002 3274 -3152 478 319 99 26 chr4 160983129 160984194 -41344153 + L1ME4a LINE L1 3337 4479 -1947 708 263 76 14 chr4 160984669 160984958 -41343389 + L1ME4a LINE L1 5872 6178 -223 1161 222 146 44 chr4 160985132 160985654 -41342693 + MER90 LTR ERV1 1 575 0 948 150 92 48 chr4 160985899 160986106 -41342241 - MER20 DNA MER1_type 0 219 4 187 266 0 31 chr4 160986180 160986244 -41342103 + MIR SINE MIR 108 169 -93 2119 125 0 6 chr4 160987073 160987384 -41340963 - AluSx SINE Alu -3 309 1 207 0 0 0 chr4 160987389 160987412 -41340935 + (TTG)n Simple_repeat Simple_repeat 2 24 0 21 36 0 0 chr4 160988174 160988202 -41340145 + AT_rich Low_complexity Low_complexity 1 28 0 19580 89 47 1 chr4 160988702 160992402 -41335945 + L1PA7 LINE L1 2450 6151 -3 24 0 0 0 chr4 160992417 160992441 -41335906 + AT_rich Low_complexity Low_complexity 1 24 0 219 114 0 0 chr4 160994649 160994684 -41333663 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 709 213 38 25 chr4 160995052 160995212 -41333135 - MER5B DNA MER1_type -16 162 1 204 304 22 33 chr4 160995219 160995311 -41333036 + MER5A DNA MER1_type 74 164 -25 349 288 20 65 chr4 160995337 160995490 -41332857 - MIR SINE MIR -69 193 48 245 299 28 9 chr4 160997738 160997845 -41330502 + CT-rich Low_complexity Low_complexity 2 110 0 313 278 104 9 chr4 160998053 160998168 -41330179 - LTR33A LTR ERVL -123 400 275 1238 165 18 0 chr4 160998885 160999109 -41329238 + L1MA6 LINE L1 6073 6300 0 2607 168 26 30 chr4 160999228 160999697 -41328650 + MLT1C LTR MaLR 1 467 0 1829 161 3 3 chr4 160999771 161000063 -41328284 + AluJb SINE Alu 13 304 -8 3619 151 18 20 chr4 161001335 161001946 -41326401 + LTR31 LTR ERV1 1 610 -9 404 328 86 38 chr4 161002621 161003121 -41325226 + L2 LINE L2 2148 2671 -643 270 276 82 0 chr4 161003286 161003384 -41324963 + L2 LINE L2 2164 2269 -1045 272 83 0 0 chr4 161003399 161003435 -41324912 + (TGG)n Simple_repeat Simple_repeat 1 36 0 1269 117 0 16 chr4 161003437 161003625 -41324722 - AluSg/x SINE Alu -7 303 119 623 333 83 49 chr4 161003625 161004154 -41324193 + L2 LINE L2 2282 2828 -486 225 274 94 47 chr4 161004588 161004694 -41323653 + L2 LINE L2 2973 3083 -189 190 427 57 0 chr4 161004720 161004844 -41323503 - L2 LINE L2 -3 3269 3139 243 369 74 13 chr4 161004882 161005031 -41323316 + L2 LINE L2 3083 3240 -32 743 221 0 0 chr4 161006639 161006775 -41321572 + MER77 LTR ERV1 459 594 -11 2025 194 58 54 chr4 161006790 161006898 -41321449 - MLT1D LTR MaLR -7 498 392 2782 104 6 6 chr4 161006898 161007262 -41321085 + THE1B LTR MaLR 1 364 0 2025 194 58 54 chr4 161007262 161007649 -41320698 - MLT1D LTR MaLR -113 392 1 229 333 45 9 chr4 161007978 161008089 -41320258 + MER5A DNA MER1_type 1 115 -74 22 35 0 0 chr4 161008400 161008429 -41319918 + AT_rich Low_complexity Low_complexity 1 29 0 222 62 0 0 chr4 161008989 161009021 -41319326 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 239 292 11 22 chr4 161009505 161009594 -41318753 - MIR SINE MIR -70 192 105 427 254 74 16 chr4 161010786 161010908 -41317439 + MIR SINE MIR 60 188 -74 307 253 77 11 chr4 161011047 161011138 -41317209 + L1ME4a LINE L1 5982 6078 -43 326 205 54 90 chr4 161011293 161011459 -41316888 - HAL1 LINE L1 -1467 1040 881 235 250 0 0 chr4 161011521 161011565 -41316782 - MER97c DNA MER1_type? 0 1090 1047 201 237 34 0 chr4 161011565 161011624 -41316723 + (TA)n Simple_repeat Simple_repeat 1 61 0 1311 167 90 0 chr4 161011624 161011935 -41316412 - MER97a DNA MER1_type? -61 833 495 201 136 0 45 chr4 161011936 161011980 -41316367 + (TTTTTA)n Simple_repeat Simple_repeat 5 46 0 2939 28 0 0 chr4 161011981 161012303 -41316044 - L1PA4 LINE L1 -3 6152 5831 498 287 123 10 chr4 161012596 161012791 -41315556 + MIR SINE MIR 16 232 -30 8108 135 1 10 chr4 161013644 161014942 -41313405 - L1P LINE L1 -3857 2289 1003 4391 165 69 14 chr4 161015471 161016254 -41312093 - LTR1B LTR ERV1 0 826 1 1039 139 0 6 chr4 161016407 161016573 -41311774 + L1MA6 LINE L1 6131 6295 -5 21 0 0 0 chr4 161016578 161016599 -41311748 + AT_rich Low_complexity Low_complexity 1 21 0 1007 201 21 0 chr4 161016904 161017093 -41311254 + MER3 DNA MER1_type 1 193 -16 6158 185 52 15 chr4 161018081 161019485 -41308862 + L1M2c LINE L1 1142 2608 -4181 2240 194 67 0 chr4 161019487 161019888 -41308459 - MSTA LTR MaLR 0 428 1 2056 158 35 64 chr4 161019888 161020294 -41308053 - MSTA-int LTR MaLR 0 1651 1258 * 2117 182 2 40 chr4 161020293 161020688 -41307659 - MSTA-int LTR MaLR -859 792 413 14066 138 3 15 chr4 161020788 161023983 -41304364 - HERVH LTR ERV1 -2807 4906 1815 2203 106 7 0 chr4 161024100 161024392 -41303955 - AluY SINE Alu -17 294 1 192 262 0 0 chr4 161024498 161024540 -41303807 - MIR SINE MIR -57 151 110 578 167 10 0 chr4 161024917 161025013 -41303334 - MER96B DNA MER1_type? 0 417 321 5973 246 33 12 chr4 161025035 161026588 -41301759 + L1M2c LINE L1 5 1348 -5441 3344 108 9 36 chr4 161026697 161027224 -41301123 - HERVH LTR ERV1 -44 7669 7157 * 7242 113 7 22 chr4 161027217 161028309 -41300038 - HERVH LTR ERV1 -1697 6016 4941 7637 54 1 1 chr4 161028409 161029336 -41299011 + L1PA5 LINE L1 5227 6153 -1 2493 158 29 20 chr4 161029996 161030444 -41297903 - Tigger2 DNA MER2_type 0 2718 2267 441 176 0 0 chr4 161030428 161030496 -41297851 - Tigger2 DNA MER2_type -2649 69 2 * 245 319 14 0 chr4 161030518 161030587 -41297760 + L2 LINE L2 3235 3304 -9 19257 46 0 0 chr4 161031120 161033454 -41294893 - L1P LINE L1 -1060 5086 2752 1731 43 0 0 chr4 161033453 161033660 -41294687 + L1P LINE L1 2516 2722 -3424 * 413 240 0 20 chr4 161034078 161034178 -41294169 - MIR SINE MIR -43 219 122 207 0 0 0 chr4 161035016 161035039 -41293308 + (A)n Simple_repeat Simple_repeat 1 23 0 445 269 17 17 chr4 161035519 161035638 -41292709 + L2 LINE L2 3195 3313 0 1340 234 61 36 chr4 161036065 161036458 -41291889 + MLT1C LTR MaLR 65 467 0 24 67 0 0 chr4 161036521 161036566 -41291781 + AT_rich Low_complexity Low_complexity 1 45 0 392 327 43 26 chr4 161037938 161038162 -41290185 + MIR SINE MIR 1 227 -35 433 265 90 11 chr4 161038297 161038486 -41289861 - MLT1J LTR MaLR -4 507 304 3169 46 0 3 chr4 161038513 161038903 -41289444 - L1P LINE L1 -910 5236 4848 1334 79 0 6 chr4 161038903 161039067 -41289280 + L1PA5 LINE L1 5973 6135 -19 2316 123 55 75 chr4 161039167 161039637 -41288710 - LTR1 LTR ERV1 -293 492 32 235 366 41 16 chr4 161039705 161039828 -41288519 - L2 LINE L2 -21 3292 3167 231 241 0 0 chr4 161039832 161039886 -41288461 + L1MB8 LINE L1 6125 6178 0 2343 94 0 7 chr4 161041978 161042276 -41286071 + AluSg SINE Alu 5 300 -10 234 0 0 0 chr4 161042276 161042302 -41286045 + (TA)n Simple_repeat Simple_repeat 2 27 0 1771 221 65 14 chr4 161042307 161042751 -41285596 + MLT1C LTR MaLR 1 467 0 2314 95 3 0 chr4 161042873 161043168 -41285179 + AluSp SINE Alu 1 296 -17 399 229 0 79 chr4 161044805 161044945 -41283402 - L1MC4 LINE L1 0 8042 7914 198 275 6 12 chr4 161044953 161045113 -41283234 + (TA)n Simple_repeat Simple_repeat 1 159 0 825 247 9 9 chr4 161045117 161045348 -41282999 - L1MC4 LINE L1 -126 7916 7686 327 293 80 53 chr4 161045601 161045751 -41282596 - MIR3 SINE MIR -15 193 40 505 295 87 6 chr4 161046894 161047067 -41281280 + MIR3 SINE MIR 14 200 -8 940 172 12 18 chr4 161047635 161047798 -41280549 + FRAM SINE Alu 1 155 -21 250 253 10 71 chr4 161048395 161048494 -41279853 + MIR SINE MIR 148 240 -22 390 297 101 7 chr4 161048559 161048707 -41279640 + L2 LINE L2 2380 2541 -773 21 0 0 0 chr4 161050289 161050310 -41278037 + AT_rich Low_complexity Low_complexity 1 21 0 348 250 62 45 chr4 161051008 161051120 -41277227 - L2 LINE L2 -5 3267 3154 * 375 314 34 0 chr4 161051115 161051233 -41277114 + MIR SINE MIR 23 144 -64 220 373 84 0 chr4 161051341 161051483 -41276864 + MIR SINE MIR 103 256 -6 462 239 161 32 chr4 161051684 161051902 -41276445 - HAL1 LINE L1 -13 2494 2249 2126 143 146 11 chr4 161051920 161052297 -41276050 + MSTA LTR MaLR 1 428 0 7834 217 71 7 chr4 161052299 161053782 -41274565 + MSTA-int LTR MaLR 3 1580 0 2035 141 106 47 chr4 161053782 161054044 -41274303 + MSTA LTR MaLR 1 297 -131 2155 157 73 14 chr4 161054044 161054388 -41273959 + THE1B LTR MaLR 1 364 0 2035 141 106 47 chr4 161054388 161054529 -41273818 + MSTA LTR MaLR 297 428 0 2729 249 96 26 chr4 161054537 161055599 -41272748 - HAL1 LINE L1 -286 2221 1086 279 367 53 32 chr4 161059068 161059256 -41269091 - L3 LINE CR1 -114 1463 1272 217 372 47 27 chr4 161059801 161059949 -41268398 - L3 LINE CR1 -138 1439 1289 1496 181 43 11 chr4 161060112 161060388 -41267959 + AluJb SINE Alu 1 285 -27 267 31 0 0 chr4 161060407 161060439 -41267908 + (GAA)n Simple_repeat Simple_repeat 2 33 0 2113 136 0 3 chr4 161061321 161061631 -41266716 - AluSx SINE Alu -3 309 1 1905 190 31 11 chr4 161061683 161062035 -41266312 - MLT1A1 LTR MaLR -1 364 6 1549 214 34 19 chr4 161062039 161062418 -41265929 - MER74A LTR ERVL -39 519 135 517 266 168 16 chr4 161063405 161063649 -41264698 + L2 LINE L2 2373 2653 -661 616 207 63 0 chr4 161063650 161063761 -41264586 - AluJb SINE Alu -24 288 171 652 270 141 26 chr4 161063767 161063959 -41264388 + L2 LINE L2 2659 2828 -485 4346 172 88 13 chr4 161063959 161064727 -41263620 - LTR1B LTR ERV1 0 826 1 652 270 141 26 chr4 161064727 161065058 -41263289 + L2 LINE L2 2828 3262 -51 1058 186 5 31 chr4 161065684 161065878 -41262469 + MER5A DNA MER1_type 1 189 0 288 222 202 0 chr4 161065892 161065991 -41262356 - MER5A DNA MER1_type -6 183 65 375 111 0 0 chr4 161065991 161066045 -41262302 - Alu SINE Alu 0 302 249 306 155 0 35 chr4 161066047 161066105 -41262242 - MER5A DNA MER1_type -118 71 16 5143 207 44 45 chr4 161067376 161067549 -41260798 + L1MB8 LINE L1 4026 4198 -1980 2187 127 7 0 chr4 161067549 161067857 -41260490 - AluSq SINE Alu -3 310 1 5143 207 44 45 chr4 161067857 161069845 -41258502 + L1MB8 LINE L1 4198 6178 0 438 289 47 77 chr4 161071640 161071875 -41256472 + L3 LINE CR1 902 1129 -448 231 235 59 0 chr4 161072162 161072230 -41256117 + MIR SINE MIR 80 151 -111 4639 151 24 30 chr4 161073157 161074003 -41254344 - HERVH LTR ERV1 -6094 1619 779 1986 188 98 11 chr4 161074024 161074481 -41253866 - HERVH LTR ERV1 -7216 497 1 1730 181 122 22 chr4 161074481 161074890 -41253457 - LTR7 LTR ERV1 0 450 1 2403 152 70 5 chr4 161074921 161075323 -41253024 - MSTA LTR MaLR 0 428 1 12745 170 39 49 chr4 161075323 161079697 -41248650 + L1MA5A LINE L1 2666 6991 -8 279 177 76 0 chr4 161079697 161079776 -41248571 + MER96B DNA MER1_type? 91 175 -242 2379 231 44 87 chr4 161079791 161080349 -41247998 + MER21B LTR ERV1 14 526 -337 2356 50 44 0 chr4 161080349 161080647 -41247700 + AluY SINE Alu 1 311 0 2379 231 44 87 chr4 161080647 161080914 -41247433 + MER21B LTR ERV1 526 803 -60 799 217 23 6 chr4 161080939 161081114 -41247233 - MER96B DNA MER1_type? -172 245 68 2264 101 0 3 chr4 161082317 161082614 -41245733 + AluSx SINE Alu 1 296 -16 2078 164 129 28 chr4 161083803 161084260 -41244087 - MLT1D LTR MaLR -2 503 1 909 319 37 53 chr4 161084272 161084659 -41243688 + L2 LINE L2 2831 3210 -103 1741 153 8 0 chr4 161084659 161084921 -41243426 - AluJb SINE Alu -14 298 35 909 319 37 53 chr4 161084921 161085022 -41243325 + L2 LINE L2 3210 3311 -2 1553 285 130 12 chr4 161085022 161085675 -41242672 - HAL1 LINE L1 -1767 740 11 312 354 39 39 chr4 161085863 161086044 -41242303 - MIR3 SINE MIR -25 183 3 876 250 9 27 chr4 161087966 161088190 -41240157 + MIR SINE MIR 43 262 0 519 357 64 4 chr4 161088356 161088591 -41239756 + MIR SINE MIR 14 262 0 250 230 54 40 chr4 161088588 161088662 -41239685 - MIR SINE MIR -78 184 110 * 1328 99 0 0 chr4 161088807 161088979 -41239368 + AluSg/x SINE Alu 136 307 -5 192 40 0 0 chr4 161089912 161089937 -41238410 + (TCTCTG)n Simple_repeat Simple_repeat 2 26 0 293 213 0 16 chr4 161090146 161090207 -41238140 + MIR SINE MIR 89 148 -60 294 294 35 0 chr4 161090432 161090517 -41237830 - MIR3 SINE MIR -17 191 104 1432 154 77 0 chr4 161092475 161092735 -41235612 - AluJb SINE Alu -30 282 3 236 246 0 18 chr4 161093874 161093931 -41234416 + CT-rich Low_complexity Low_complexity 4 59 0 318 26 0 0 chr4 161094012 161094051 -41234296 + (TTAG)n Simple_repeat Simple_repeat 2 40 0 370 288 159 96 chr4 161094862 161095133 -41233214 + L2 LINE L2 2985 3272 0 578 250 163 12 chr4 161097139 161097299 -41231048 - MIR SINE MIR 0 262 79 1962 167 3 0 chr4 161097996 161098290 -41230057 - AluSx SINE Alu -17 295 1 432 151 194 21 chr4 161098442 161098535 -41229812 + FLAM_A SINE Alu 32 140 -2 5884 108 48 3 chr4 161098629 161100040 -41228307 + L1PA16 LINE L1 4714 6165 -1 456 165 33 22 chr4 161102425 161102516 -41225831 - L1M3 LINE L1 -679 5655 5564 1317 141 23 61 chr4 161102620 161102777 -41225570 + L1MA10 LINE L1 6065 6210 -124 198 0 0 0 chr4 161102777 161102799 -41225548 + (TA)n Simple_repeat Simple_repeat 1 22 0 1317 141 23 61 chr4 161102799 161102903 -41225444 + L1MA10 LINE L1 6210 6316 -18 713 148 74 0 chr4 161102907 161103029 -41225318 + L1MB1 LINE L1 5842 5972 -217 210 37 0 0 chr4 161103480 161103507 -41224840 + (CAA)n Simple_repeat Simple_repeat 3 29 0 714 81 315 0 chr4 161104635 161104746 -41223601 + AluSg SINE Alu 1 146 -164 1762 103 0 0 chr4 161104747 161104989 -41223358 + AluSg/x SINE Alu 65 306 -4 2074 116 13 35 chr4 161105738 161106056 -41222291 - AluSx SINE Alu -1 311 1 444 287 0 16 chr4 161106106 161106228 -41222119 + FLAM_A SINE Alu 1 120 -13 1248 80 107 5 chr4 161106353 161106540 -41221807 - LTR1 LTR ERV1 0 785 580 2027 213 56 23 chr4 161106648 161107164 -41221183 - L1MC4 LINE L1 -393 7649 7117 1158 173 13 96 chr4 161107285 161107597 -41220750 - L1MA10 LINE L1 0 6334 6049 796 248 25 0 chr4 161107598 161107800 -41220547 - L1MC4 LINE L1 -957 7085 6879 329 42 0 21 chr4 161109634 161109682 -41218665 + (TG)n Simple_repeat Simple_repeat 1 47 0 25 75 0 0 chr4 161110446 161110499 -41217848 + AT_rich Low_complexity Low_complexity 1 53 0 765 214 0 0 chr4 161110845 161111004 -41217343 + L1ME3 LINE L1 4905 5063 -1083 890 212 53 49 chr4 161111190 161111335 -41217012 + MIR SINE MIR 14 162 -100 1976 200 53 5 chr4 161111335 161111372 -41216975 - MLT2D LTR ERVL 0 414 380 534 16 0 0 chr4 161111372 161111435 -41216912 + (TG)n Simple_repeat Simple_repeat 2 64 0 1976 200 53 5 chr4 161111435 161111792 -41216555 - MLT2D LTR ERVL -34 380 1 890 212 53 49 chr4 161111792 161111891 -41216456 + MIR SINE MIR 162 259 -3 2425 37 9 46 chr4 161113118 161113441 -41214906 - AluY SINE Alu 0 311 1 842 223 98 12 chr4 161115305 161115620 -41212727 + L1ME3 LINE L1 5697 5979 -183 201 198 240 42 chr4 161115779 161115875 -41212472 + L2 LINE L2 3193 3307 -6 4929 156 27 13 chr4 161116184 161117025 -41211322 + L1MA4 LINE L1 5443 6295 -5 23 0 0 0 chr4 161117063 161117086 -41211261 + AT_rich Low_complexity Low_complexity 1 23 0 2708 242 64 22 chr4 161117112 161117799 -41210548 - MER21B LTR ERV1 -48 815 100 293 329 80 7 chr4 161118997 161119134 -41209213 + MIR SINE MIR 37 183 -79 311 290 175 22 chr4 161120817 161121131 -41207216 + L1ME4a LINE L1 5621 5982 -139 2234 80 0 0 chr4 161121178 161121452 -41206895 + AluY SINE Alu 21 294 -17 180 0 0 0 chr4 161121557 161121577 -41206770 + (CG)n Simple_repeat Simple_repeat 2 21 0 * 432 0 0 0 chr4 161121576 161121624 -41206723 + (CA)n Simple_repeat Simple_repeat 1 48 0 675 67 0 0 chr4 161122492 161122581 -41205766 + (TA)n Simple_repeat Simple_repeat 1 89 0 2333 107 3 3 chr4 161122592 161122902 -41205445 - AluSg SINE Alu 0 310 1 887 228 148 20 chr4 161123446 161123770 -41204577 - MSTC LTR MaLR -2 426 32 283 271 10 31 chr4 161123848 161123944 -41204403 + GA-rich Low_complexity Low_complexity 1 94 0 261 0 0 0 chr4 161124200 161124229 -41204118 + (TC)n Simple_repeat Simple_repeat 1 29 0 186 43 0 0 chr4 161124232 161124255 -41204092 + (CA)n Simple_repeat Simple_repeat 1 23 0 439 282 144 0 chr4 161124628 161124830 -41203517 - MIR SINE MIR -1 261 31 363 193 48 12 chr4 161124868 161124951 -41203396 - L1ME LINE L1 -519 5647 5562 * 1206 214 41 0 chr4 161124950 161125216 -41203131 - L1ME LINE L1 -1774 4372 4096 * 2138 223 80 0 chr4 161125204 161125729 -41202618 + L1M2 LINE L1 2630 3196 -2950 832 216 41 5 chr4 161125830 161126024 -41202323 + L1M2 LINE L1 3589 3789 -2357 7240 202 140 10 chr4 161126032 161127861 -41200486 + L1PB1 LINE L1 6 2072 -4791 * 8890 172 3 5 chr4 161127856 161130501 -41197846 + L1PB1 LINE L1 4227 6865 -2 21 36 0 0 chr4 161130511 161130539 -41197808 + AT_rich Low_complexity Low_complexity 1 28 0 1922 146 0 36 chr4 161130793 161131095 -41197252 + AluSx SINE Alu 1 291 -21 9132 147 16 9 chr4 161131102 161133089 -41195258 + L1M2 LINE L1 3789 5785 -515 1757 183 0 4 chr4 161133091 161133370 -41194977 + AluJb SINE Alu 3 280 -32 1018 103 0 12 chr4 161133371 161133536 -41194811 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 245 231 87 39 chr4 161134041 161134145 -41194202 - L3 LINE CR1 -2 1575 1467 351 257 0 93 chr4 161134189 161134329 -41194018 - L3 LINE CR1 -315 1262 1136 450 259 171 12 chr4 161134586 161134756 -41193591 - MIR SINE MIR 0 262 66 1795 157 7 10 chr4 161136826 161137125 -41191222 + AluJb SINE Alu 15 312 0 714 282 120 61 chr4 161137128 161137653 -41190694 + HAL1 LINE L1 183 738 -1769 1567 248 87 25 chr4 161137666 161138138 -41190209 + MER97a DNA MER1_type? 3 503 -391 44490 45 2 0 chr4 161138140 161143966 -41184381 + L1PA4 LINE L1 2 5834 -321 2110 97 7 0 chr4 161193966 161194254 -41134093 - AluSc SINE Alu -19 290 1 270 383 72 12 chr4 161194638 161194805 -41133542 + MIR SINE MIR 20 196 -66 180 0 0 0 chr4 161195395 161195415 -41132932 + (T)n Simple_repeat Simple_repeat 1 20 0 2385 104 45 20 chr4 161195633 161195988 -41132359 + THE1B LTR MaLR 1 364 0 9137 112 19 3 chr4 161195988 161197272 -41131075 + THE1B-int LTR MaLR 1 1305 -275 262 273 55 45 chr4 161198523 161198633 -41129714 + Charlie2 DNA MER1_type 41 151 -2631 581 222 0 141 chr4 161200083 161200154 -41128193 - MER5A DNA MER1_type -3 186 107 1670 157 24 3 chr4 161200154 161200447 -41127900 + AluJb SINE Alu 1 299 -13 581 222 0 141 chr4 161200447 161200573 -41127774 - MER5A DNA MER1_type -82 107 17 962 312 4 4 chr4 161200678 161200928 -41127419 - MIR SINE MIR 0 262 13 460 281 155 83 chr4 161200945 161201404 -41126943 - L2 LINE L2 -484 2830 2339 4202 141 140 30 chr4 161202573 161203317 -41125030 - LTR12 LTR ERV1 0 826 1 628 209 63 53 chr4 161203553 161203759 -41124588 - pTR5 LTR ERV1 -1489 949 742 282 271 29 0 chr4 161203851 161203921 -41124426 - MIR SINE MIR -112 150 79 2238 199 15 3 chr4 161205275 161205666 -41122681 + MSTD LTR MaLR 1 396 0 2156 178 5 33 chr4 161206129 161206528 -41121819 + MLT1B LTR MaLR 3 390 0 272 211 14 28 chr4 161208060 161208131 -41120216 + (TATG)n Simple_repeat Simple_repeat 3 72 0 189 74 0 0 chr4 161208589 161208616 -41119731 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 6209 69 5 42 chr4 161208618 161208975 -41119372 - L1PB1 LINE L1 0 6151 5782 333 0 0 0 chr4 161208975 161209012 -41119335 + (CA)n Simple_repeat Simple_repeat 2 38 0 6209 69 5 42 chr4 161209012 161209055 -41119292 - L1PB1 LINE L1 -369 5782 5739 2277 104 0 3 chr4 161209055 161209354 -41118993 - AluSg SINE Alu -12 298 1 6209 69 5 42 chr4 161209354 161209833 -41118514 - L1PB1 LINE L1 -412 5739 5304 * 15048 83 4 7 chr4 161209826 161212110 -41116237 - L1P3 LINE L1 -575 5579 3304 571 298 34 34 chr4 161212302 161212537 -41115810 + MIR SINE MIR 3 237 -25 251 320 0 112 chr4 161212933 161213058 -41115289 - L2 LINE L2 0 3272 3162 418 314 51 61 chr4 161213100 161213412 -41114935 - MLT1I LTR MaLR -30 379 71 1336 154 8 17 chr4 161214122 161214356 -41113991 - L1MB3 LINE L1 -15 6168 5937 387 204 161 0 chr4 161214374 161214467 -41113880 - L2 LINE L2 -10 3303 3196 180 0 0 0 chr4 161215357 161215377 -41112970 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 240 206 38 92 chr4 161215705 161215836 -41112511 + L1ME4a LINE L1 5996 6119 -2 21 36 0 0 chr4 161216119 161216147 -41112200 + AT_rich Low_complexity Low_complexity 1 28 0 248 328 197 26 chr4 161216491 161217217 -41111130 + L2 LINE L2 335 1184 -2130 676 210 70 61 chr4 161217279 161217508 -41110839 - MIR SINE MIR -10 252 22 1867 108 0 4 chr4 161217970 161218221 -41110126 + AluSq SINE Alu 48 297 -16 409 330 75 29 chr4 161218480 161218828 -41109519 - HAL1 LINE L1 -2143 364 1 312 276 102 22 chr4 161218858 161219232 -41109115 - L1P LINE L1 -740 5411 5007 260 306 56 9 chr4 161221185 161221293 -41107054 + MIR3 SINE MIR 81 193 -15 326 247 14 0 chr4 161221730 161221803 -41106544 - MER5B DNA MER1_type -2 176 103 870 119 0 8 chr4 161221811 161221937 -41106410 - MLT1B LTR MaLR 0 390 266 332 246 0 0 chr4 161221939 161222008 -41106339 - MLT1B LTR MaLR -321 69 1 327 232 61 20 chr4 161222008 161222107 -41106240 - MER5B DNA MER1_type -75 103 1 268 279 0 0 chr4 161222404 161222472 -41105875 + MER116 DNA Mariner 13 80 0 480 272 0 7 chr4 161222523 161222659 -41105688 - MIR SINE MIR -81 181 47 201 108 0 0 chr4 161222903 161222940 -41105407 + (T)n Simple_repeat Simple_repeat 1 37 0 536 232 179 13 chr4 161224121 161224272 -41104075 + MER5A DNA MER1_type 14 189 0 679 251 48 29 chr4 161224368 161224575 -41103772 + L2 LINE L2 3103 3313 0 199 333 171 8 chr4 161225036 161225153 -41103194 - L2 LINE L2 -607 2707 2572 614 247 68 53 chr4 161225632 161225895 -41102452 + L2 LINE L2 3045 3311 -2 394 258 69 69 chr4 161225914 161226220 -41102127 - L2 LINE L2 -742 2572 2267 358 278 98 47 chr4 161226368 161226623 -41101724 - L1ME4a LINE L1 -19 6102 5835 893 245 78 37 chr4 161226680 161227306 -41101041 - HAL1 LINE L1 -1120 1387 613 326 206 103 0 chr4 161227314 161227382 -41100965 - Zaphod DNA AcHobo 0 4031 3957 1374 196 103 71 chr4 161227527 161227975 -41100372 - MLT1C LTR MaLR 0 467 6 17850 125 14 100 chr4 161228433 161232084 -41096263 - L1P LINE L1 -2799 3347 12 13143 190 10 33 chr4 161232109 161232697 -41095650 - L1 LINE L1 -1183 4963 4363 2353 82 0 31 chr4 161232697 161233014 -41095333 - AluY SINE Alu -4 307 1 13143 190 10 33 chr4 161233014 161235347 -41093000 - L1 LINE L1 -1783 4363 2110 2779 67 40 0 chr4 161235352 161235727 -41092620 - L1PBa LINE L1 -4203 2660 2271 2320 151 17 24 chr4 161236074 161236491 -41091856 + THE1-int LTR MaLR 1099 1512 -68 257 324 14 0 chr4 161236545 161236619 -41091728 + Charlie8 DNA MER1_type 1 75 -2342 349 91 18 0 chr4 161236652 161236707 -41091640 + THE1B-int LTR MaLR 1525 1580 0 2513 108 45 14 chr4 161236707 161237060 -41091287 + THE1B LTR MaLR 1 364 0 546 201 209 50 chr4 161237129 161237368 -41090979 - Charlie8 DNA MER1_type -2128 289 13 5870 101 66 5 chr4 161237711 161239018 -41089329 - L1PBa LINE L1 -4700 2163 626 1213 148 5 0 chr4 161239012 161239208 -41089139 - L1PBa LINE L1 -6664 199 3 * 360 288 81 109 chr4 161239594 161239879 -41088468 - L2 LINE L2 0 3272 2996 289 321 0 61 chr4 161239926 161240057 -41088290 - L2 LINE L2 -1387 1927 1805 26 0 0 0 chr4 161240120 161240146 -41088201 + AT_rich Low_complexity Low_complexity 1 26 0 40 21 0 0 chr4 161240402 161240449 -41087898 + AT_rich Low_complexity Low_complexity 1 47 0 30 0 0 0 chr4 161240460 161240490 -41087857 + AT_rich Low_complexity Low_complexity 1 30 0 23 100 0 0 chr4 161240503 161240563 -41087784 + AT_rich Low_complexity Low_complexity 1 60 0 6977 198 40 75 chr4 161240602 161242589 -41085758 + L1MB7 LINE L1 3115 5012 -1134 2104 124 0 7 chr4 161242589 161242887 -41085460 + AluSx SINE Alu 1 296 -16 6977 198 40 75 chr4 161242887 161243236 -41085111 + L1MB7 LINE L1 5012 5371 -775 777 194 188 0 chr4 161243237 161243423 -41084924 + AluYa5 SINE Alu 84 304 -7 3989 186 39 12 chr4 161243423 161244223 -41084124 + L1MB7 LINE L1 5359 6179 -5 2358 103 0 0 chr4 161245193 161245505 -41082842 + AluSx SINE Alu 1 312 0 22 80 0 0 chr4 161246009 161246059 -41082288 + AT_rich Low_complexity Low_complexity 1 50 0 3153 95 5 14 chr4 161246117 161246550 -41081797 - L1PB1 LINE L1 -13 6138 5710 1354 121 17 69 chr4 161247203 161247434 -41080913 + MER20 DNA MER1_type 1 219 0 2334 153 62 5 chr4 161247533 161247906 -41080441 + MSTD LTR MaLR 1 394 -2 6127 191 54 128 chr4 161247910 161249775 -41078572 + MSTD-int LTR MaLR 2 1729 -6 2203 149 105 11 chr4 161249780 161250142 -41078205 + MSTD LTR MaLR 1 396 0 771 179 63 74 chr4 161250361 161250551 -41077796 - MER5A DNA MER1_type -1 188 1 2450 70 3 3 chr4 161251294 161251592 -41076755 - AluSq SINE Alu -15 298 1 39 74 0 0 chr4 161252875 161252956 -41075391 + AT_rich Low_complexity Low_complexity 1 81 0 243 305 140 16 chr4 161252965 161253124 -41075223 - MIR SINE MIR -49 213 22 209 300 17 17 chr4 161253147 161253207 -41075140 + L2 LINE L2 3203 3262 -10 2215 102 7 13 chr4 161253437 161253742 -41074605 - AluSx SINE Alu -9 303 1 585 66 0 0 chr4 161253799 161253875 -41074472 + MADE1 DNA Mariner 2 77 -3 1271 257 60 19 chr4 161254022 161254492 -41073855 + L1MCb LINE L1 3 491 -5554 1357 238 107 14 chr4 161254799 161255443 -41072904 - L1 LINE L1 -2757 3389 2693 1775 177 41 79 chr4 161255451 161256010 -41072337 - LTR55 LTR ERV -10 538 1 484 197 0 16 chr4 161256020 161256147 -41072200 - L1 LINE L1 -3513 2633 2509 271 250 34 34 chr4 161256750 161256838 -41071509 - MER117 DNA MER1_type -3 194 107 5805 232 46 15 chr4 161256839 161258616 -41069731 - L1M4 LINE L1 -797 5349 3519 431 335 45 0 chr4 161258719 161258874 -41069473 + L2 LINE L2 3110 3271 -1 219 255 39 0 chr4 161259273 161259324 -41069023 - MIR SINE MIR -68 140 88 283 307 171 0 chr4 161260054 161260142 -41068205 + L2 LINE L2 3127 3229 -43 376 216 40 0 chr4 161260169 161260243 -41068104 + L2 LINE L2 3235 3311 -2 2120 194 13 13 chr4 161260504 161260900 -41067447 + MSTD LTR MaLR 1 396 0 766 195 0 0 chr4 161261119 161261242 -41067105 - FLAM_A SINE Alu -9 124 2 1873 144 4 21 chr4 161261570 161261954 -41066393 + Tigger3(Golem) DNA MER2_type 2 3027 -2 1361 182 20 4 chr4 161262017 161262270 -41066077 + MLT1A1 LTR MaLR 107 363 -2 189 0 0 0 chr4 161267125 161267146 -41061201 + (A)n Simple_repeat Simple_repeat 1 21 0 272 336 96 0 chr4 161271420 161271524 -41056823 + MIR3 SINE MIR 82 195 -13 388 203 23 105 chr4 161272161 161272268 -41056079 + MER5A DNA MER1_type 43 139 -50 1658 80 4 9 chr4 161272268 161272494 -41055853 - AluY SINE Alu -2 309 85 388 203 23 105 chr4 161272494 161272519 -41055828 + MER5A DNA MER1_type 139 164 -25 272 313 0 12 chr4 161272602 161272682 -41055665 - L2 LINE L2 -3 3310 3232 181 327 19 0 chr4 161272967 161273019 -41055328 - MIR SINE MIR -6 256 204 14272 114 30 24 chr4 161274047 161276422 -41051925 + Tigger1 DNA MER2_type 30 2418 0 195 220 0 0 chr4 161276427 161276477 -41051870 + (TA)n Simple_repeat Simple_repeat 1 50 0 862 232 41 8 chr4 161276490 161276736 -41051611 - L1ME3A LINE L1 -24 6146 5893 738 175 80 0 chr4 161276946 161277146 -41051201 + Charlie5 DNA MER1_type 2370 2585 -27 2480 86 0 3 chr4 161277651 161277964 -41050383 - AluSq SINE Alu 0 313 2 180 111 0 0 chr4 161278524 161278551 -41049796 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 1708 211 241 14 chr4 161279359 161279941 -41048406 - MER21B LTR ERV1 -52 811 98 1618 284 50 5 chr4 161280446 161281142 -41047205 + ERVL LTR ERVL 3668 4413 -1351 299 92 40 66 chr4 161281142 161281218 -41047129 + THE1B LTR MaLR 1 74 -290 550 277 63 83 chr4 161281342 161281595 -41046752 + L2 LINE L2 3025 3272 0 209 354 173 31 chr4 161281733 161281959 -41046388 - L2 LINE L2 -604 2710 2453 201 204 20 0 chr4 161282190 161282239 -41046108 + (TA)n Simple_repeat Simple_repeat 2 51 0 221 57 29 0 chr4 161282275 161282310 -41046037 + (TA)n Simple_repeat Simple_repeat 2 37 0 1629 171 62 0 chr4 161282574 161282895 -41045452 + L1MB8 LINE L1 5343 5683 -495 1223 133 4 89 chr4 161282908 161283133 -41045214 + AluJo SINE Alu 87 292 -20 2363 188 22 10 chr4 161283134 161283628 -41044719 + L1MB8 LINE L1 5679 6178 0 2394 84 0 0 chr4 161283878 161284188 -41044159 + AluY SINE Alu 1 310 -1 261 239 34 68 chr4 161284390 161284478 -41043869 + MIR3 SINE MIR 120 204 -4 368 278 143 38 chr4 161286342 161286551 -41041796 - MIR SINE MIR -19 243 13 270 64 0 21 chr4 161287028 161287075 -41041272 + MADE1 DNA Mariner 35 80 0 2247 87 0 10 chr4 161287343 161287632 -41040715 + AluSx SINE Alu 1 286 -26 762 203 18 6 chr4 161287777 161287940 -41040407 - MER5B DNA MER1_type -13 165 1 180 0 0 0 chr4 161288021 161288041 -41040306 + (TTCC)n Simple_repeat Simple_repeat 4 23 0 212 191 133 105 chr4 161290030 161290135 -41038212 + MIR SINE MIR 81 188 -74 2398 142 5 34 chr4 161291745 161291789 -41036558 - MER57A LTR ERV1 0 403 359 1988 130 0 17 chr4 161291789 161292090 -41036257 - AluSx SINE Alu -16 296 1 2398 142 5 34 chr4 161292090 161292460 -41035887 - MER57A LTR ERV1 -44 359 1 333 172 0 0 chr4 161292780 161292844 -41035503 + (CA)n Simple_repeat Simple_repeat 1 64 0 337 264 136 25 chr4 161295068 161295310 -41033037 + L1ME LINE L1 5533 5801 -320 384 204 53 61 chr4 161295366 161295498 -41032849 + MLT1I LTR MaLR 318 407 -2 202 104 21 21 chr4 161296398 161296446 -41031901 + (TTA)n Simple_repeat Simple_repeat 3 50 0 183 263 0 18 chr4 161297186 161297243 -41031104 + MER5B DNA MER1_type 2 57 -121 6481 85 9 10 chr4 161297244 161298636 -41029711 - L1PA7 LINE L1 -377 5777 4383 2844 53 6 0 chr4 161298636 161298988 -41029359 + L1PA7 LINE L1 5795 6154 0 250 279 171 27 chr4 161299118 161299229 -41029118 - MER5B DNA MER1_type -48 130 4 180 77 0 0 chr4 161300891 161300917 -41027430 + (TA)n Simple_repeat Simple_repeat 1 26 0 585 347 89 32 chr4 161302154 161302650 -41025697 + L1MEd LINE L1 12 535 -5584 1920 152 43 27 chr4 161303015 161303383 -41024964 - MLT1A2 LTR MaLR 0 374 1 211 302 147 16 chr4 161303394 161303523 -41024824 + MIR SINE MIR 46 191 -71 24 32 0 0 chr4 161304360 161304391 -41023956 + AT_rich Low_complexity Low_complexity 1 31 0 1332 238 17 46 chr4 161305725 161306141 -41022206 - L1M4 LINE L1 -2232 3914 3511 607 286 11 11 chr4 161307110 161307299 -41021048 + LTR33 LTR ERVL 1 189 -332 424 221 16 16 chr4 161307421 161307502 -41020845 + LTR33 LTR ERVL 393 476 -45 264 30 0 0 chr4 161307502 161307535 -41020812 + (CA)n Simple_repeat Simple_repeat 2 34 0 424 221 16 16 chr4 161307535 161307580 -41020767 + LTR33 LTR ERVL 475 519 -2 341 310 69 5 chr4 161307584 161307787 -41020560 - MARNA DNA Mariner -283 303 88 334 276 35 9 chr4 161307702 161307818 -41020529 + MARNA DNA Mariner 410 528 -58 * 249 159 0 0 chr4 161308872 161308916 -41019431 + (TA)n Simple_repeat Simple_repeat 1 44 0 196 287 69 23 chr4 161309072 161309159 -41019188 - MIR3 SINE MIR -6 202 112 264 234 52 26 chr4 161311825 161311902 -41016445 + L2 LINE L2 2290 2368 -946 313 344 143 23 chr4 161311992 161312829 -41015518 - L2 LINE L2 -218 3054 2127 3137 189 48 11 chr4 161313199 161313827 -41014520 - MER82 DNA MER2_type 0 653 3 561 213 73 13 chr4 161314032 161314182 -41014165 + MIR3 SINE MIR 43 201 -7 204 97 0 0 chr4 161314928 161314959 -41013388 + (CA)n Simple_repeat Simple_repeat 1 31 0 438 349 24 34 chr4 161315096 161315305 -41013042 - MER115 DNA AcHobo -399 294 88 353 257 14 0 chr4 161315714 161315788 -41012559 + L2 LINE L2 3239 3313 0 441 0 0 0 chr4 161316765 161316814 -41011533 + (TG)n Simple_repeat Simple_repeat 2 50 0 357 231 41 16 chr4 161316819 161316940 -41011407 + L1ME4a LINE L1 5976 6099 -22 322 20 0 41 chr4 161317320 161317369 -41010978 + (CA)n Simple_repeat Simple_repeat 2 48 0 222 255 21 85 chr4 161317379 161317520 -41010827 + L2 LINE L2 3014 3145 -168 399 333 83 6 chr4 161317876 161318056 -41010291 + MIR SINE MIR 47 240 -22 2093 120 0 37 chr4 161319279 161319603 -41008744 - AluSx SINE Alu 0 312 1 1259 190 0 0 chr4 161319630 161319841 -41008506 + AluJo SINE Alu 85 295 -17 2825 132 4 4 chr4 161320643 161321098 -41007249 + L1PA16 LINE L1 5703 6157 -9 228 319 43 43 chr4 161321538 161321726 -41006621 + L2 LINE L2 2819 3006 -266 373 236 46 9 chr4 161322039 161322174 -41006173 + L1ME1 LINE L1 6018 6132 -34 231 256 58 58 chr4 161324457 161324578 -41003769 + MIR SINE MIR 97 217 -45 269 211 0 0 chr4 161324652 161324704 -41003643 - L2 LINE L2 0 3313 3262 282 253 53 0 chr4 161324895 161324970 -41003377 - L2 LINE L2 -1 3271 3193 230 259 12 47 chr4 161325082 161325167 -41003180 + MIR SINE MIR 60 141 -67 2321 88 0 23 chr4 161325417 161325725 -41002622 + AluSx SINE Alu 2 302 -10 15570 121 14 22 chr4 161325805 161329167 -40999180 - L1PA10 LINE L1 0 6168 2792 566 217 24 123 chr4 161329217 161329429 -40998918 - MLT1A1 LTR MaLR -174 191 1 254 278 99 28 chr4 161331207 161331419 -40996928 + L1M3 LINE L1 4942 5168 -978 672 274 118 36 chr4 161331544 161332069 -40996278 + L1M3 LINE L1 5259 5841 -338 305 289 102 53 chr4 161332246 161332433 -40995914 - L1ME LINE L1 -612 5550 5355 1068 144 16 32 chr4 161332481 161332669 -40995678 + AluJb SINE Alu 1 185 -127 860 124 7 36 chr4 161332699 161332836 -40995511 + FLAM_C SINE Alu 1 133 0 2234 104 13 0 chr4 161333419 161333726 -40994621 - AluY SINE Alu 0 311 1 264 59 0 0 chr4 161333736 161333770 -40994577 + (T)n Simple_repeat Simple_repeat 1 34 0 1788 153 16 39 chr4 161335840 161336148 -40992199 - AluJo SINE Alu -11 301 1 1225 232 3 38 chr4 161337921 161338214 -40990133 + AluJb SINE Alu 2 284 -18 314 246 44 26 chr4 161338298 161338412 -40989935 - L1M4 LINE L1 -2950 3196 3081 244 214 0 43 chr4 161338414 161338484 -40989863 + T-rich Low_complexity Low_complexity 5 71 0 216 0 0 0 chr4 161338646 161338670 -40989677 + (A)n Simple_repeat Simple_repeat 1 24 0 964 181 0 0 chr4 161338684 161338844 -40989503 + AluJb SINE Alu 148 307 -5 1131 112 0 0 chr4 161338855 161339025 -40989322 + (GGGA)n Simple_repeat Simple_repeat 3 172 0 442 308 15 8 chr4 161339492 161339625 -40988722 + MIR3 SINE MIR 64 197 -11 2186 118 7 0 chr4 161339625 161339929 -40988418 - AluSc SINE Alu -3 306 1 302 289 41 10 chr4 161340312 161340409 -40987938 + MIR SINE MIR 71 170 -92 246 62 0 0 chr4 161341502 161341534 -40986813 + (TG)n Simple_repeat Simple_repeat 2 33 0 450 0 0 0 chr4 161341636 161341686 -40986661 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 341 64 0 0 chr4 161342457 161342504 -40985843 + L1MB3 LINE L1 6097 6143 -40 1010 156 0 35 chr4 161342505 161342678 -40985669 + FRAM SINE Alu 1 167 -9 285 16 16 97 chr4 161342679 161342741 -40985606 + L1MB4 LINE L1 6124 6180 0 243 352 39 39 chr4 161343287 161343415 -40984932 - L2 LINE L2 -12 3260 3133 574 248 173 3 chr4 161343997 161344177 -40984170 - MIR SINE MIR -28 234 28 347 228 64 58 chr4 161345243 161345414 -40982933 + MLT1I LTR MaLR 35 206 -203 201 39 0 0 chr4 161349322 161349348 -40978999 + (T)n Simple_repeat Simple_repeat 1 26 0 254 164 98 0 chr4 161350656 161350717 -40977630 + MIR SINE MIR 62 128 -134 1035 204 28 20 chr4 161351961 161352211 -40976136 + THE1C LTR MaLR 124 375 0 10253 120 11 32 chr4 161352211 161353825 -40974522 + THE1C-int LTR MaLR 1 1580 0 2026 141 24 29 chr4 161353825 161354202 -40974145 + THE1C LTR MaLR 1 375 0 1269 254 20 24 chr4 161354203 161354811 -40973536 + ERVL-F LTR ERVL 4410 5019 -635 560 234 26 13 chr4 161354844 161354998 -40973349 + ERVL-F LTR ERVL 5261 5416 -348 808 144 88 0 chr4 161355066 161355191 -40973156 - AluJ SINE Alu -23 289 154 646 178 0 0 chr4 161355192 161355299 -40973048 - AluJ SINE Alu -205 107 1 284 206 62 0 chr4 161355421 161355518 -40972829 + ERVL-F LTR ERVL 5620 5722 -42 811 271 180 48 chr4 161355539 161356121 -40972226 + MLT2F LTR ERVL 1 659 -4 183 80 0 0 chr4 161356361 161356386 -40971961 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 196 279 31 124 chr4 161356400 161356529 -40971818 + L2 LINE L2 1851 1967 -1347 434 252 43 26 chr4 161356557 161356672 -40971675 + L2 LINE L2 3191 3307 -6 1651 146 86 11 chr4 161356672 161356940 -40971407 + AluSx SINE Alu 1 288 -24 315 293 0 0 chr4 161357129 161357211 -40971136 - L2 LINE L2 0 3313 3232 222 335 117 68 chr4 161357563 161357870 -40970477 + L2 LINE L2 2942 3263 -9 369 0 0 0 chr4 161358443 161358484 -40969863 + (CA)n Simple_repeat Simple_repeat 2 42 0 243 250 183 0 chr4 161360689 161360793 -40967554 + MIR3 SINE MIR 81 203 -5 582 315 51 51 chr4 161361288 161361785 -40966562 + L2 LINE L2 2766 3248 -65 958 151 57 10 chr4 161361828 161362020 -40966327 + MER3 DNA MER1_type 1 201 -8 2217 126 3 0 chr4 161363714 161364023 -40964324 - AluSx SINE Alu -2 310 1 188 344 0 16 chr4 161365652 161365713 -40962634 + MIR3 SINE MIR 123 182 -26 2277 120 19 19 chr4 161366474 161366849 -40961498 - THE1C LTR MaLR 0 375 1 288 53 0 0 chr4 161367576 161367614 -40960733 + (T)n Simple_repeat Simple_repeat 1 38 0 766 225 53 54 chr4 161368889 161369432 -40958915 - MER51A LTR ERV1 0 640 1 455 324 24 6 chr4 161369901 161370071 -40958276 + MIR SINE MIR 90 262 0 1698 129 7 3 chr4 161371609 161371896 -40956451 + L1MA6 LINE L1 6013 6300 0 9849 209 60 36 chr4 161371899 161372765 -40955582 + L1MC3 LINE L1 922 1765 -4661 2177 116 20 0 chr4 161372765 161373067 -40955280 - AluSg SINE Alu -2 308 1 9849 209 60 36 chr4 161373067 161373723 -40954624 + L1MC3 LINE L1 1765 2404 -4022 802 157 8 15 chr4 161373723 161373857 -40954490 + AluJo/FLAM SINE Alu 1 133 -169 1773 187 7 3 chr4 161373860 161374160 -40954187 + AluJb SINE Alu 1 301 -11 9849 209 60 36 chr4 161374160 161375051 -40953296 + L1MC3 LINE L1 2405 3273 -3153 1965 146 7 13 chr4 161375051 161375353 -40952994 + AluJo SINE Alu 1 300 -12 9849 209 60 36 chr4 161375353 161377237 -40951110 + L1MC3 LINE L1 3273 4429 -1997 2367 87 0 3 chr4 161377237 161377547 -40950800 + AluY SINE Alu 1 309 -2 9849 209 60 36 chr4 161377547 161378833 -40949514 + L1MC3 LINE L1 4429 5682 -744 2086 137 0 7 chr4 161379941 161380248 -40948099 - AluSx SINE Alu 0 312 8 371 202 11 0 chr4 161380478 161380567 -40947780 + CT-rich Low_complexity Low_complexity 3 92 0 1675 166 58 0 chr4 161381768 161382046 -40946301 - AluJb SINE Alu -18 294 1 390 268 36 7 chr4 161382832 161382970 -40945377 - MER117 DNA MER1_type -53 144 3 2168 114 3 0 chr4 161385816 161386114 -40942233 + AluSx SINE Alu 9 307 -5 285 29 0 0 chr4 161386114 161386148 -40942199 + (CA)n Simple_repeat Simple_repeat 2 35 0 510 311 89 18 chr4 161386398 161386623 -40941724 - MIR SINE MIR -16 246 6 365 195 0 97 chr4 161387064 161387249 -40941098 + C-rich Low_complexity Low_complexity 6 172 0 810 165 224 52 chr4 161389241 161389513 -40938834 + MER33 DNA MER1_type 5 323 -1 782 142 0 0 chr4 161389608 161389728 -40938619 + FLAM_A SINE Alu 1 120 -22 182 367 92 9 chr4 161391173 161391282 -40937065 + MIR SINE MIR 49 166 -96 560 303 17 46 chr4 161391346 161391521 -40936826 + MER5B DNA MER1_type 9 178 0 244 237 53 6 chr4 161391525 161391633 -40936714 - MER5B DNA MER1_type -1 177 1 2814 89 65 0 chr4 161392830 161393245 -40935102 + L1PA10 LINE L1 5721 6162 -6 299 210 16 16 chr4 161393890 161393952 -40934395 + MER5B DNA MER1_type 58 119 -59 249 57 0 0 chr4 161393959 161393994 -40934353 + (A)n Simple_repeat Simple_repeat 1 35 0 2728 174 43 10 chr4 161394003 161394588 -40933759 + L1MC3 LINE L1 5816 6419 -1366 2764 132 53 29 chr4 161394592 161394644 -40933703 + L1MC3 LINE L1 6560 6609 -1176 351 78 0 0 chr4 161394644 161394695 -40933652 + (TG)n Simple_repeat Simple_repeat 2 52 0 2764 132 53 29 chr4 161394695 161395189 -40933158 + L1MC3 LINE L1 6609 7119 -666 1640 180 23 29 chr4 161395189 161395534 -40932813 + MLT2C1 LTR ERVL 1 343 -54 387 185 0 11 chr4 161395536 161395628 -40932719 + L1MC3 LINE L1 7677 7767 -18 314 106 21 0 chr4 161395644 161395691 -40932656 - MER5B DNA MER1_type -129 49 2 2419 84 0 7 chr4 161396114 161396422 -40931925 - AluSg SINE Alu -4 306 1 212 86 29 0 chr4 161396713 161396748 -40931599 + (TCC)n Simple_repeat Simple_repeat 3 38 0 193 243 314 0 chr4 161398806 161398876 -40929471 - L2 LINE L2 -5 3308 3217 201 243 187 47 chr4 161399363 161399470 -40928877 - MIR3 SINE MIR -46 162 41 206 204 0 19 chr4 161400034 161400088 -40928259 + (TGGA)n Simple_repeat Simple_repeat 2 54 0 26 0 0 0 chr4 161401887 161401913 -40926434 + AT_rich Low_complexity Low_complexity 1 26 0 659 224 168 6 chr4 161402523 161402702 -40925645 + L2 LINE L2 3106 3313 0 949 151 22 16 chr4 161403068 161403253 -40925094 - MER61E LTR ERV1 -43 526 341 419 248 23 23 chr4 161403413 161403542 -40924805 - LTR25 LTR ERV1 -418 376 248 816 119 6 81 chr4 161404174 161404334 -40924013 + MLT2A1 LTR ERVL 5 152 -292 505 103 0 0 chr4 161404338 161404406 -40923941 - AluS SINE Alu -242 71 4 26 0 0 0 chr4 161404414 161404440 -40923907 + AT_rich Low_complexity Low_complexity 1 26 0 1891 136 0 7 chr4 161404628 161404915 -40923432 - AluJb SINE Alu -4 308 24 249 231 265 37 chr4 161405306 161405451 -40922896 - MIR SINE MIR -40 168 37 238 221 29 58 chr4 161405915 161405956 -40922391 - MER33 DNA MER1_type -2262 323 282 2232 124 0 7 chr4 161405956 161406263 -40922084 - AluSx SINE Alu -7 305 1 238 221 29 58 chr4 161406263 161406325 -40922022 - MER33 DNA MER1_type -2303 282 223 1885 159 7 3 chr4 161406346 161406641 -40921706 - AluJo SINE Alu -16 296 1 590 167 142 25 chr4 161406654 161406858 -40921489 - MER33 DNA MER1_type -89 235 8 435 345 56 39 chr4 161406865 161407186 -40921161 + L2 LINE L2 2684 2998 -274 569 216 0 11 chr4 161407227 161407403 -40920944 + (CCA)n Simple_repeat Simple_repeat 1 174 0 * 639 182 11 17 chr4 161407388 161407564 -40920783 + (CACCAT)n Simple_repeat Simple_repeat 3 177 0 1290 182 123 19 chr4 161408483 161408791 -40919556 - MER2 DNA MER2_type 0 345 6 405 0 0 0 chr4 161411506 161411551 -40916796 + (CA)n Simple_repeat Simple_repeat 2 46 0 23 0 0 0 chr4 161412316 161412339 -40916008 + AT_rich Low_complexity Low_complexity 1 23 0 626 191 0 56 chr4 161412587 161412749 -40915598 - L1MA10 LINE L1 0 6334 6182 1375 176 25 97 chr4 161412793 161413186 -40915161 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr4 161413206 161413228 -40915119 + AT_rich Low_complexity Low_complexity 1 22 0 327 250 137 46 chr4 161413268 161413552 -40914795 - L1M4 LINE L1 -1077 5069 4760 1281 241 63 8 chr4 161413665 161414008 -40914339 - L1M4 LINE L1 -1430 4716 4331 2243 156 55 31 chr4 161414008 161414424 -40913923 + MSTB LTR MaLR 1 426 0 1281 241 63 8 chr4 161414424 161414616 -40913731 - L1M4 LINE L1 -1815 4331 4151 589 332 22 51 chr4 161414701 161415111 -40913236 - MER31-int LTR ERV1 -885 6652 6255 2432 208 46 42 chr4 161415561 161416229 -40912118 - MER31-int LTR ERV1 -1782 5755 5085 450 236 30 51 chr4 161416274 161416507 -40911840 - MER31-int LTR ERV1 -1696 4457 3078 350 299 75 79 chr4 161416808 161417086 -40911261 - L2 LINE L2 -11 3261 2985 243 0 0 0 chr4 161418016 161418043 -40910304 + (TA)n Simple_repeat Simple_repeat 1 27 0 232 102 41 20 chr4 161418109 161418158 -40910189 + L1MA9 LINE L1 5164 5213 -933 1478 85 137 7 chr4 161418161 161418431 -40909916 + L1MA2 LINE L1 6000 6304 0 5551 122 48 20 chr4 161418462 161419547 -40908800 + L1MA9 LINE L1 5197 6311 -1 25 0 0 0 chr4 161419875 161419900 -40908447 + AT_rich Low_complexity Low_complexity 1 25 0 184 345 0 0 chr4 161420185 161420243 -40908104 - L2 LINE L2 -2 3311 3254 288 217 17 0 chr4 161420668 161420728 -40907619 - MER81 DNA DNA -2 112 52 293 234 27 81 chr4 161420796 161420907 -40907440 + MIR SINE MIR 9 113 -149 960 291 76 28 chr4 161420935 161421264 -40907083 + L2 LINE L2 2820 3180 -133 1325 218 152 64 chr4 161421264 161421809 -40906538 + MLT1E LTR MaLR 1 593 0 960 291 76 28 chr4 161421809 161421950 -40906397 + L2 LINE L2 3180 3313 0 1687 154 89 52 chr4 161422087 161422469 -40905878 + MSTD LTR MaLR 1 396 0 6598 141 43 6 chr4 161422737 161423924 -40904423 + Tigger3b DNA MER2_type 1 1231 0 253 312 16 40 chr4 161425150 161425275 -40903072 + MLT1J2 LTR MaLR 41 162 -284 1134 171 71 34 chr4 161425471 161425819 -40902528 + MSTD LTR MaLR 1 396 0 1718 187 120 39 chr4 161427094 161427560 -40900787 + MLT1D LTR MaLR 1 504 -1 24 0 0 0 chr4 161427685 161427709 -40900638 + AT_rich Low_complexity Low_complexity 1 24 0 893 130 7 27 chr4 161427889 161428027 -40900320 + AluJo SINE Alu 1 137 -175 1718 190 10 10 chr4 161428027 161428322 -40900025 + AluJb SINE Alu 1 295 -17 939 226 58 23 chr4 161428479 161428788 -40899559 - MER57B-int LTR ERV1 -2142 2794 2475 513 208 76 76 chr4 161428783 161429195 -40899152 - MER57B-int LTR ERV1 -2554 2569 2110 * 575 192 0 0 chr4 161429219 161429323 -40899024 - FLAM_C SINE Alu -15 128 25 6597 122 14 18 chr4 161429513 161431557 -40896790 + L1MA3 LINE L1 4271 6305 0 3355 120 10 6 chr4 161431666 161432175 -40896172 + MER9 LTR ERVK 1 511 0 4323 90 18 21 chr4 161432175 161432844 -40895503 + HERVK9 LTR ERVK 1 667 -5249 * 29001 86 3 1 chr4 161432840 161436842 -40891505 + HERVK9 LTR ERVK 1626 5634 -282 2088 93 0 0 chr4 161436924 161437219 -40891128 + HERVK9 LTR ERVK 5638 5916 0 3255 121 12 6 chr4 161437221 161437726 -40890621 + MER9 LTR ERVK 4 511 0 606 254 16 74 chr4 161437917 161438173 -40890174 - MER57B-int LTR ERV1 -7294 243 3 662 259 43 55 chr4 161438178 161438619 -40889728 - MER57B LTR ERV1 0 434 1 1667 241 113 26 chr4 161438635 161439658 -40888689 - L1MEc LINE L1 -2848 3367 2256 534 105 0 0 chr4 161439765 161439841 -40888506 + MSTD LTR MaLR 1 76 -320 600 102 0 0 chr4 161439843 161439931 -40888416 - AluY SINE Alu -8 303 216 1457 208 51 0 chr4 161439931 161440244 -40888103 + MSTD LTR MaLR 68 396 0 313 289 58 25 chr4 161440245 161440366 -40887981 - L1MEc LINE L1 -4182 2214 2090 214 211 18 0 chr4 161440532 161440589 -40887758 + T-rich Low_complexity Low_complexity 4 61 0 180 111 0 0 chr4 161440751 161440778 -40887569 + (TC)n Simple_repeat Simple_repeat 1 27 0 346 286 79 121 chr4 161441249 161441893 -40886454 + L1M2 LINE L1 769 1385 -5464 2250 124 3 0 chr4 161443414 161443721 -40884626 - AluSx SINE Alu -4 308 1 239 339 101 48 chr4 161443729 161443897 -40884450 - MIR SINE MIR -39 223 47 1266 151 23 9 chr4 161444098 161444317 -40884030 + AluJo SINE Alu 1 222 -90 189 0 0 0 chr4 161444674 161444695 -40883652 + (T)n Simple_repeat Simple_repeat 1 21 0 4821 49 7 0 chr4 161444922 161445518 -40882829 - L1PA6 LINE L1 0 6154 5555 1928 173 14 14 chr4 161445639 161446003 -40882344 + MLT1A1 LTR MaLR 2 365 0 332 248 129 10 chr4 161447928 161448029 -40880318 + L2 LINE L2 3194 3306 -7 1930 121 4 11 chr4 161448397 161448669 -40879678 + AluSx SINE Alu 13 282 -30 257 68 23 0 chr4 161448687 161448731 -40879616 + (TA)n Simple_repeat Simple_repeat 1 45 0 6930 189 43 10 chr4 161449265 161452028 -40876319 + L1M1 LINE L1 1 2851 -3477 251 116 0 0 chr4 161452178 161452221 -40876126 - MLT2A1 LTR ERVL -8 436 394 295 185 45 19 chr4 161452242 161452399 -40875948 + (TA)n Simple_repeat Simple_repeat 2 162 0 334 198 50 10 chr4 161452402 161452503 -40875844 + (CATA)n Simple_repeat Simple_repeat 4 108 0 2957 73 5 2 chr4 161452511 161452910 -40875437 - MLT2A1 LTR ERVL -44 400 1 2523 51 7 0 chr4 161452921 161453216 -40875131 - AluY SINE Alu -14 297 1 11528 160 48 14 chr4 161453222 161454420 -40873927 + L1M1 LINE L1 3283 4438 -2044 1363 169 75 18 chr4 161454420 161454698 -40873649 + AluJb SINE Alu 2 295 -17 11528 160 48 14 chr4 161454698 161455916 -40872431 + L1M1 LINE L1 4438 5788 -694 2222 112 0 0 chr4 161455916 161456211 -40872136 + AluSx SINE Alu 1 295 -17 609 160 30 0 chr4 161456225 161456325 -40872022 + AluSq/x SINE Alu 2 104 -209 600 292 86 57 chr4 161456347 161456754 -40871593 + L2 LINE L2 529 947 -2367 1149 298 154 38 chr4 161457352 161458023 -40870324 + L2 LINE L2 1269 2091 -1223 2242 108 6 25 chr4 161458023 161458338 -40870009 - AluSx SINE Alu -3 309 1 1149 298 154 38 chr4 161458338 161458644 -40869703 + L2 LINE L2 2091 2360 -954 2594 110 8 8 chr4 161458661 161459016 -40869331 - THE1A LTR MaLR 0 355 1 6453 87 18 2 chr4 161459016 161459859 -40868488 - THE1A-int LTR MaLR 0 1580 725 692 181 0 11 chr4 161459976 161460158 -40868189 + (CCA)n Simple_repeat Simple_repeat 1 180 0 217 116 0 47 chr4 161460159 161460202 -40868145 + (CACCAT)n Simple_repeat Simple_repeat 4 44 0 665 192 0 8 chr4 161460205 161460458 -40867889 + (CCA)n Simple_repeat Simple_repeat 1 250 0 381 328 94 8 chr4 161460590 161460718 -40867629 + L2 LINE L2 3134 3272 0 317 299 136 0 chr4 161460856 161461010 -40867337 - MIR SINE MIR -11 251 77 783 158 0 0 chr4 161461147 161461261 -40867086 - AluSg/x SINE Alu -11 301 188 21 0 0 0 chr4 161461275 161461296 -40867051 + AT_rich Low_complexity Low_complexity 1 21 0 264 284 0 0 chr4 161461541 161461615 -40866732 + MIR SINE MIR 184 257 -5 378 42 0 0 chr4 161461617 161461665 -40866682 + (CAT)n Simple_repeat Simple_repeat 2 49 0 1703 134 197 11 chr4 161461769 161462053 -40866294 - MER1B DNA MER1_type 0 337 1 347 331 79 7 chr4 161462212 161462351 -40865996 + MIR SINE MIR 2 150 -112 215 239 377 31 chr4 161462871 161463001 -40865346 + MIR SINE MIR 51 225 -37 297 0 0 0 chr4 161463002 161463035 -40865312 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 263 280 65 21 chr4 161463048 161463141 -40865206 + L2 LINE L2 2994 3090 -182 1727 163 24 0 chr4 161464866 161465160 -40863187 + L1PA16 LINE L1 5866 6166 0 1950 108 21 87 chr4 161465617 161465951 -40862396 - AluSx SINE Alu 0 312 1 200 283 0 0 chr4 161466503 161466549 -40861798 + GA-rich Low_complexity Low_complexity 3 48 0 1780 166 17 0 chr4 161466860 161467150 -40861197 - AluJo SINE Alu -17 295 1 2057 142 10 0 chr4 161467276 161467571 -40860776 - AluSx SINE Alu -14 298 1 662 211 78 64 chr4 161467917 161468001 -40860346 - MER3 DNA MER1_type 0 209 128 1869 165 0 13 chr4 161468001 161468316 -40860031 - AluJo SINE Alu 0 312 2 662 211 78 64 chr4 161468316 161468335 -40860012 - MER3 DNA MER1_type -81 128 111 1964 118 69 3 chr4 161468335 161468624 -40859723 - AluSq SINE Alu -5 308 1 662 211 78 64 chr4 161468624 161468723 -40859624 - MER3 DNA MER1_type -98 111 3 758 175 0 0 chr4 161468871 161468985 -40859362 - FLAM_A SINE Alu -11 131 18 2703 129 40 26 chr4 161468985 161469405 -40858942 + MSTA LTR MaLR 1 426 -2 37 52 0 0 chr4 161469544 161469602 -40858745 + AT_rich Low_complexity Low_complexity 1 58 0 1932 141 3 32 chr4 161470436 161470749 -40857598 - AluJb SINE Alu -8 304 1 236 192 0 0 chr4 161471097 161471167 -40857180 + A-rich Low_complexity Low_complexity 1 70 0 252 281 21 52 chr4 161472330 161472426 -40855921 + L3 LINE CR1 1449 1541 -36 182 233 100 33 chr4 161472932 161472992 -40855355 + L2 LINE L2 3161 3224 -89 205 274 0 0 chr4 161474674 161474725 -40853622 + (CATA)n Simple_repeat Simple_repeat 4 54 0 1096 175 26 70 chr4 161474921 161475149 -40853198 + MER20 DNA MER1_type 2 219 0 264 290 0 0 chr4 161475279 161475341 -40853006 - MER2 DNA MER2_type 0 345 284 * 396 224 51 21 chr4 161475328 161475462 -40852885 - MER2 DNA MER2_type -92 147 1 1386 205 70 133 chr4 161475955 161476608 -40851739 + L1MC4 LINE L1 7431 8042 0 285 282 138 43 chr4 161476814 161477002 -40851345 + MLT1L LTR MaLR 410 615 0 36 40 0 0 chr4 161477376 161477426 -40850921 + AT_rich Low_complexity Low_complexity 1 50 0 2915 257 62 52 chr4 161477435 161478678 -40849669 + L1MC4 LINE L1 6787 8042 0 3113 165 25 8 chr4 161478739 161479255 -40849092 + Tigger7 DNA MER2_type 1 525 -208 345 117 106 128 chr4 161479249 161479343 -40849004 + Tigger7 DNA MER2_type 2400 2491 0 * 308 156 0 65 chr4 161480939 161481016 -40847331 + AluJ/FRAM SINE Alu 231 302 0 27 29 0 0 chr4 161482643 161482677 -40845670 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr4 161482692 161482723 -40845624 + AT_rich Low_complexity Low_complexity 1 31 0 329 249 45 50 chr4 161484336 161484506 -40843841 - L1MC/D LINE L1 -469 5652 5484 1633 159 0 102 chr4 161485823 161486157 -40842190 + AluJo SINE Alu 2 301 -1 22 0 0 0 chr4 161486805 161486827 -40841520 + AT_rich Low_complexity Low_complexity 1 22 0 2382 57 0 3 chr4 161487123 161487429 -40840918 - AluY SINE Alu 0 305 1 390 256 47 70 chr4 161487671 161487800 -40840547 - L2 LINE L2 -1 3312 3187 2007 138 3 0 chr4 161488403 161488709 -40839638 - AluSx SINE Alu 0 307 1 674 127 0 27 chr4 161489272 161489382 -40838965 - FLAM_A SINE Alu -1 141 35 849 147 0 15 chr4 161489600 161489736 -40838611 - FLAM_C SINE Alu -3 140 7 827 201 148 41 chr4 161490254 161490498 -40837849 - LOR1b LTR ERV1 0 461 192 328 164 15 0 chr4 161490495 161490562 -40837785 - LOR1a LTR ERV1 -189 308 241 * 662 191 236 11 chr4 161490655 161490833 -40837514 - MIR SINE MIR -27 235 18 1950 132 3 24 chr4 161491092 161491388 -40836959 + AluJo SINE Alu 1 290 -22 284 216 88 56 chr4 161491544 161491669 -40836678 - MLT1J LTR MaLR -49 462 334 425 94 31 0 chr4 161491683 161491747 -40836600 - MER58 DNA MER1_type 0 2420 2355 202 284 34 3 chr4 161491842 161491976 -40836371 - MER5A DNA MER1_type 0 189 9 241 248 277 0 chr4 161492033 161492170 -40836177 - MLT1J LTR MaLR -265 246 72 1661 150 64 11 chr4 161493089 161493369 -40834978 + AluJb SINE Alu 1 295 -17 642 272 119 39 chr4 161493486 161493560 -40834787 + L2 LINE L2 2920 2987 -326 2187 109 7 3 chr4 161493560 161493863 -40834484 - AluSx SINE Alu -8 304 1 642 272 119 39 chr4 161493863 161494148 -40834199 + L2 LINE L2 2987 3308 -5 1961 187 67 2 chr4 161494375 161494792 -40833555 - L1MB3 LINE L1 -104 6079 5636 209 224 41 0 chr4 161495494 161495543 -40832804 - MER5B DNA MER1_type -124 54 4 1806 83 8 17 chr4 161495592 161495832 -40832515 + AluSg/x SINE Alu 71 308 -4 1857 157 0 38 chr4 161499147 161499460 -40828887 + AluJo SINE Alu 1 301 -11 868 244 157 13 chr4 161500186 161500345 -40828002 - L2 LINE L2 -4 3309 3174 1988 124 3 30 chr4 161500345 161500644 -40827703 - AluSx SINE Alu -21 291 1 868 244 157 13 chr4 161500644 161500971 -40827376 - L2 LINE L2 -139 3174 2728 1227 186 69 31 chr4 161500981 161501307 -40827040 + LTR40b LTR ERVL 6 334 -131 2190 286 16 16 chr4 161501309 161501945 -40826402 + HERVL40 LTR ERVL 2882 3517 -2013 784 313 38 11 chr4 161501947 161502318 -40826029 + MER89-int LTR ERV1 6118 6498 -303 * 1087 235 56 3 chr4 161502195 161502528 -40825819 + HERVL40 LTR ERVL 2783 5525 -5 674 250 48 5 chr4 161502532 161502720 -40825627 + LTR40a LTR ERVL 1 196 -323 1089 293 291 18 chr4 161502723 161503733 -40824614 - L2 LINE L2 -1069 2245 960 1665 167 13 43 chr4 161505901 161506201 -40822146 - AluJo SINE Alu -21 291 1 2037 116 14 0 chr4 161506739 161507023 -40821324 - AluSx SINE Alu -2 310 23 311 318 68 36 chr4 161507028 161507220 -40821127 - L1ME4a LINE L1 -175 5946 5749 1777 111 85 0 chr4 161507274 161507545 -40820802 - AluSx SINE Alu -18 294 1 226 200 147 0 chr4 161507605 161507680 -40820667 + MER106B DNA MER1_type 934 1019 -40 2211 99 6 16 chr4 161508256 161508570 -40819777 + AluSx SINE Alu 1 311 -1 260 158 40 79 chr4 161508571 161508647 -40819700 + L1ME3 LINE L1 5873 5945 -217 1805 188 100 14 chr4 161508886 161509307 -40819040 + L1MB3 LINE L1 5692 6148 -35 325 237 108 0 chr4 161511224 161511317 -40817030 + MIR SINE MIR 38 140 -122 490 182 61 28 chr4 161514100 161514243 -40814104 + MIR SINE MIR 18 165 -43 1567 159 4 8 chr4 161514322 161514579 -40813768 - AluJo SINE Alu -11 301 46 712 276 87 28 chr4 161515282 161515452 -40812895 + L1M1 LINE L1 5433 5592 -548 2534 118 39 14 chr4 161515452 161515807 -40812540 - THE1B LTR MaLR 0 364 1 712 276 87 28 chr4 161515807 161516014 -40812333 + L1M1 LINE L1 5592 5838 -302 186 208 62 0 chr4 161517017 161517065 -40811282 - L3 LINE CR1 -14 1563 1513 561 260 69 23 chr4 161517601 161517774 -40810573 - MIR SINE MIR -65 197 17 180 298 21 0 chr4 161517828 161517875 -40810472 + L2 LINE L2 2418 2465 -849 2555 259 88 22 chr4 161518948 161520017 -40808330 - HAL1b LINE L1 -17 1331 193 766 156 0 0 chr4 161520799 161520921 -40807426 + L1MB4 LINE L1 5689 5810 -373 409 81 32 0 chr4 161520929 161520991 -40807356 + L1MB2 LINE L1 6069 6132 -39 1923 158 17 33 chr4 161520998 161521359 -40806988 + L1MB4 LINE L1 5813 6167 -13 352 327 50 22 chr4 161521376 161521575 -40806772 + MIR3 SINE MIR 12 208 -54 2309 130 135 8 chr4 161523341 161523719 -40804628 + MSTA LTR MaLR 3 428 0 499 243 40 29 chr4 161523807 161523980 -40804367 + L1MA10 LINE L1 6159 6333 -1 1524 121 3 108 chr4 161524662 161524969 -40803378 - AluJb SINE Alu 0 312 38 21 0 0 0 chr4 161525734 161525755 -40802592 + AT_rich Low_complexity Low_complexity 1 21 0 1670 178 42 3 chr4 161527161 161527447 -40800900 + AluSg SINE Alu 1 297 -13 2103 129 7 7 chr4 161527813 161528122 -40800225 + AluSx SINE Alu 1 309 -3 1238 145 16 10 chr4 161530616 161530809 -40797538 - AluJb SINE Alu -106 206 13 27 56 0 0 chr4 161530894 161530930 -40797417 + AT_rich Low_complexity Low_complexity 1 36 0 2201 105 0 23 chr4 161530941 161531079 -40797268 + AluSq SINE Alu 1 141 -172 2465 64 7 0 chr4 161531079 161531376 -40796971 + AluY SINE Alu 1 299 -12 2201 105 0 23 chr4 161531376 161531541 -40796806 + AluSq SINE Alu 141 297 -16 966 163 0 0 chr4 161531543 161531690 -40796657 - FAM SINE Alu -38 147 1 222 328 0 0 chr4 161531691 161531755 -40796592 + L2 LINE L2 1873 1936 -1378 1009 231 11 0 chr4 161532261 161532447 -40795900 + MER58A DNA MER1_type 1 188 -36 478 278 214 7 chr4 161532480 161532779 -40795568 + L2 LINE L2 2616 2976 -338 185 314 0 0 chr4 161532949 161533000 -40795347 + L2 LINE L2 3259 3309 -4 2436 69 0 3 chr4 161533640 161533943 -40794404 + AluY SINE Alu 1 302 -9 254 361 23 8 chr4 161534281 161534411 -40793936 - MIR SINE MIR -111 151 20 1859 128 60 0 chr4 161535012 161535293 -40793054 + AluSx SINE Alu 1 298 -14 197 317 166 7 chr4 161535806 161535951 -40792396 + MIR SINE MIR 77 244 -18 2335 176 45 17 chr4 161536646 161537206 -40791141 + L1MB3 LINE L1 5565 6173 -10 2392 97 0 0 chr4 161537269 161537579 -40790768 + AluSq SINE Alu 1 310 -3 1320 180 73 0 chr4 161537591 161537852 -40790495 + L1MA5 LINE L1 6021 6300 0 1934 168 3 3 chr4 161538039 161538343 -40790004 + AluJb SINE Alu 1 304 -8 230 0 0 32 chr4 161539866 161539897 -40788450 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 692 255 110 5 chr4 161540100 161540300 -40788047 - MIR SINE MIR -29 233 13 638 191 27 0 chr4 161541947 161542057 -40786290 + LTR25 LTR ERV1 1 113 -681 2235 96 6 29 chr4 161542057 161542371 -40785976 + AluSq SINE Alu 1 307 -6 764 188 8 0 chr4 161542374 161542507 -40785840 + LTR25 LTR ERV1 661 794 0 375 41 0 0 chr4 161543347 161543396 -40784951 + (CA)n Simple_repeat Simple_repeat 2 50 0 2487 61 0 3 chr4 161543465 161543762 -40784585 + AluY SINE Alu 1 296 -15 289 340 140 21 chr4 161544618 161545075 -40783272 - L2 LINE L2 0 3272 2765 1403 197 66 42 chr4 161545380 161545585 -40782762 - MLT1A1 LTR MaLR 0 365 147 2390 101 3 0 chr4 161545585 161545893 -40782454 - AluSx SINE Alu -3 309 1 1403 197 66 42 chr4 161545893 161546022 -40782325 - MLT1A1 LTR MaLR -218 147 23 504 160 0 13 chr4 161546134 161546209 -40782138 + AluS SINE Alu 2 75 -243 432 286 251 0 chr4 161546344 161546547 -40781800 + L2 LINE L2 2821 3074 -239 2120 117 3 0 chr4 161546555 161546858 -40781489 + AluSx SINE Alu 1 304 0 1232 22 0 0 chr4 161547049 161547186 -40781161 - L1PA5 LINE L1 -1 6153 6017 1077 104 7 0 chr4 161547431 161547575 -40780772 + AluSq/x SINE Alu 1 145 -168 1270 177 0 5 chr4 161548387 161548640 -40779707 + AluJo SINE Alu 87 338 0 252 100 0 0 chr4 161548895 161548935 -40779412 + (TG)n Simple_repeat Simple_repeat 1 40 0 2094 123 13 0 chr4 161548935 161549236 -40779111 + AluSx SINE Alu 2 306 -6 691 263 27 0 chr4 161549319 161549505 -40778842 + L2 LINE L2 2179 2369 -945 565 230 0 53 chr4 161549776 161549928 -40778419 - FRAM SINE Alu -5 171 28 439 241 101 43 chr4 161550103 161550530 -40777817 - LTR33A LTR ERVL -23 500 2 235 286 41 31 chr4 161550663 161550761 -40777586 - L2 LINE L2 -302 2970 2872 182 282 239 0 chr4 161552342 161552413 -40775934 - L2 LINE L2 -10 3262 3175 279 0 0 0 chr4 161552754 161552785 -40775562 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4091 141 58 1 chr4 161553304 161553959 -40774388 - L1MA6 LINE L1 -6 6294 5603 494 129 0 0 chr4 161554059 161554129 -40774218 + Alu SINE Alu 234 303 -9 258 32 0 0 chr4 161554275 161554306 -40774041 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 582 207 0 0 chr4 161554329 161554416 -40773931 - AluJ/FLAM SINE Alu -224 88 2 2230 43 0 14 chr4 161554751 161555029 -40773318 - L1PA5 LINE L1 0 6154 5881 622 184 16 0 chr4 161555067 161555192 -40773155 - MER53 DNA DNA 0 189 63 1969 118 0 7 chr4 161555318 161555597 -40772750 + AluSx SINE Alu 22 298 -14 557 121 12 0 chr4 161555597 161555680 -40772667 - Tigger3(Golem) DNA MER2_type -268 2761 2678 2174 115 0 16 chr4 161555680 161555994 -40772353 + AluSc SINE Alu 1 309 0 21 0 0 0 chr4 161555998 161556019 -40772328 + AT_rich Low_complexity Low_complexity 1 21 0 2316 57 7 17 chr4 161556019 161556316 -40772031 + AluY SINE Alu 1 294 -17 459 311 82 41 chr4 161556550 161556917 -40771430 + MLT1J LTR MaLR 20 401 -110 28 79 0 0 chr4 161557190 161557253 -40771094 + AT_rich Low_complexity Low_complexity 1 63 0 189 0 0 0 chr4 161557499 161557520 -40770827 + (A)n Simple_repeat Simple_repeat 1 21 0 370 324 36 22 chr4 161557622 161557761 -40770586 + MIR3 SINE MIR 7 147 -61 644 265 45 47 chr4 161558274 161558514 -40769833 - MIR SINE MIR -1 261 27 1680 172 14 14 chr4 161558564 161558854 -40769493 - AluJo SINE Alu -22 290 1 231 122 122 0 chr4 161559297 161559338 -40769009 - L2 LINE L2 -9 3263 3218 925 223 154 50 chr4 161561271 161561555 -40766792 - MLT1J LTR MaLR -2 509 256 1818 153 33 10 chr4 161561555 161561855 -40766492 - AluJb SINE Alu -5 307 1 925 223 154 50 chr4 161561855 161562031 -40766316 - MLT1J LTR MaLR -255 256 1 1178 137 10 29 chr4 161562439 161562644 -40765703 + AluSg/x SINE Alu 95 295 -17 385 246 186 72 chr4 161562647 161562726 -40765621 + L1M4 LINE L1 4007 4076 -2070 2381 79 10 0 chr4 161562726 161563029 -40765318 + AluY SINE Alu 1 306 -5 385 246 186 72 chr4 161563029 161563282 -40765065 + L1M4 LINE L1 4076 4377 -1769 1258 263 47 28 chr4 161563378 161563923 -40764424 - L2 LINE L2 -279 3034 2477 659 134 0 0 chr4 161564023 161564149 -40764198 + AluSg/x SINE Alu 185 310 0 23 33 0 0 chr4 161564257 161564287 -40764060 + AT_rich Low_complexity Low_complexity 1 30 0 760 165 0 16 chr4 161564291 161564418 -40763929 - FLAM_A SINE Alu -8 125 1 221 252 115 50 chr4 161564426 161564565 -40763782 - L2 LINE L2 -230 3042 2895 585 175 0 0 chr4 161565548 161565645 -40762702 - AluSg/x SINE Alu -10 299 203 334 311 37 42 chr4 161565746 161565936 -40762411 + L2 LINE L2 3125 3313 0 1397 109 5 15 chr4 161566858 161567081 -40761266 - AluSc SINE Alu 0 307 87 228 253 38 13 chr4 161567440 161567519 -40760828 + L1MC4a LINE L1 6098 6178 -1630 347 162 0 40 chr4 161567582 161567656 -40760691 + L1MC3 LINE L1 7705 7775 -10 2230 68 10 27 chr4 161567722 161568016 -40760331 - AluY SINE Alu -22 289 1 383 337 6 12 chr4 161568019 161568182 -40760165 - L3 LINE CR1 -310 1267 1106 748 177 99 39 chr4 161568221 161568402 -40759945 - MER20 DNA MER1_type -21 198 7 2355 93 3 10 chr4 161569383 161569696 -40758651 + AluSq SINE Alu 1 311 -2 217 342 17 8 chr4 161570285 161570402 -40757945 + L2 LINE L2 2704 2821 -493 1522 190 7 4 chr4 161570753 161571027 -40757320 - AluJb SINE Alu -20 292 18 2190 84 7 17 chr4 161571477 161571774 -40756573 + AluY SINE Alu 1 294 -17 333 123 6 40 chr4 161571829 161571899 -40756448 + FAM SINE Alu 126 179 0 589 249 71 106 chr4 161573002 161573688 -40754659 - L1MC5 LINE L1 -271 7690 7204 2411 109 3 0 chr4 161573688 161574000 -40754347 - AluSp SINE Alu 0 313 1 589 249 71 106 chr4 161574000 161574105 -40754242 - L1MC5 LINE L1 -757 7204 7097 2211 114 7 0 chr4 161574251 161574550 -40753797 - AluSq SINE Alu -11 302 2 2280 86 0 49 chr4 161575005 161575330 -40753017 - AluSg SINE Alu -1 309 1 23 0 0 0 chr4 161575411 161575434 -40752913 + AT_rich Low_complexity Low_complexity 1 23 0 228 35 0 0 chr4 161575434 161575463 -40752884 + (TG)n Simple_repeat Simple_repeat 2 30 0 2077 119 0 0 chr4 161575470 161575747 -40752600 - AluSx SINE Alu -33 279 3 2403 73 0 0 chr4 161575957 161576343 -40752004 - AluY SINE Alu 0 387 2 920 221 47 25 chr4 161576642 161576762 -40751585 - MIR SINE MIR -21 241 125 2052 157 39 17 chr4 161576762 161577119 -40751228 - MLT1A1 LTR MaLR 0 365 1 920 221 47 25 chr4 161577119 161577233 -40751114 - MIR SINE MIR -137 125 2 2416 65 3 13 chr4 161577399 161577705 -40750642 - AluY SINE Alu -8 303 1 1699 134 0 8 chr4 161577711 161577964 -40750383 - AluSc SINE Alu 0 309 59 1403 57 0 0 chr4 161578069 161578227 -40750120 - AluY SINE Alu -153 158 1 281 250 60 60 chr4 161578473 161578589 -40749758 + MIR3 SINE MIR 89 204 -4 442 218 133 30 chr4 161578887 161579052 -40749295 + MIR SINE MIR 81 262 0 2077 109 0 0 chr4 161579071 161579346 -40749001 + AluSq SINE Alu 1 275 -38 348 164 0 0 chr4 161579348 161579415 -40748932 + GA-rich Low_complexity Low_complexity 4 70 0 448 153 59 0 chr4 161579790 161579875 -40748472 - MIR SINE MIR -150 112 23 261 0 0 0 chr4 161579923 161579952 -40748395 + (TG)n Simple_repeat Simple_repeat 1 29 0 24 0 0 0 chr4 161581137 161581161 -40747186 + AT_rich Low_complexity Low_complexity 1 24 0 5174 33 4 8 chr4 161581968 161583006 -40745341 - L1PA4 LINE L1 -300 5855 4821 458 63 0 0 chr4 161583006 161583069 -40745278 + L1PA4 LINE L1 4770 4832 -1314 251 253 53 27 chr4 161583162 161583237 -40745110 + LTR67 LTR ERVL 97 173 -384 * 531 253 130 63 chr4 161583179 161583587 -40744760 + MLT1L LTR MaLR 73 613 -2 2492 81 10 0 chr4 161583809 161584117 -40744230 - AluSx SINE Alu -1 311 1 328 304 101 0 chr4 161584258 161584396 -40743951 + L2 LINE L2 2068 2219 -1095 437 86 0 0 chr4 161584396 161584454 -40743893 + MSTB LTR MaLR 1 58 -368 22 56 0 0 chr4 161584884 161584920 -40743427 + AT_rich Low_complexity Low_complexity 1 36 0 2170 107 3 3 chr4 161585572 161585861 -40742486 + AluSc SINE Alu 1 289 -20 2259 214 146 36 chr4 161586127 161586861 -40741486 - Charlie2 DNA MER1_type 0 2862 2210 4167 122 16 0 chr4 161586861 161587477 -40740870 - L1PA13 LINE L1 -19 6144 5519 2259 214 146 36 chr4 161587477 161587571 -40740776 - Charlie2 DNA MER1_type -652 2210 2128 1732 175 0 29 chr4 161587571 161587885 -40740462 - AluJb SINE Alu -3 309 5 2259 214 146 36 chr4 161587885 161587958 -40740389 - Charlie2 DNA MER1_type -734 2128 1861 531 285 50 54 chr4 161588011 161588253 -40740094 - Charlie2 DNA MER1_type -2540 242 2 303 242 10 61 chr4 161588626 161588725 -40739622 - MER5B DNA MER1_type -82 96 3 1857 140 36 0 chr4 161588764 161589042 -40739305 - AluSx SINE Alu -24 288 1 1250 119 0 26 chr4 161589093 161589286 -40739061 - AluJb SINE Alu -2 310 123 1436 142 134 8 chr4 161589387 161589640 -40738707 + AluJb SINE Alu 24 308 -4 271 137 0 20 chr4 161589780 161589831 -40738516 + L2 LINE L2 3214 3263 -9 1099 267 106 20 chr4 161590911 161591315 -40737032 + LTR16A LTR ERVL 7 445 -5 2327 109 3 3 chr4 161591436 161591747 -40736600 - AluSx SINE Alu 0 312 2 641 279 97 49 chr4 161591779 161592200 -40736147 - HAL1b LINE L1 -698 1634 245 1156 185 8 64 chr4 161592563 161592744 -40735603 + MLT1B LTR MaLR 1 164 -226 2338 113 0 3 chr4 161592744 161593055 -40735292 + AluSg SINE Alu 1 310 0 1156 185 8 64 chr4 161593055 161593138 -40735209 + MLT1B LTR MaLR 164 250 -140 2234 98 6 25 chr4 161593562 161593880 -40734467 + AluSx SINE Alu 1 312 0 2435 54 3 7 chr4 161593882 161594179 -40734168 + AluY SINE Alu 1 296 -15 243 260 0 0 chr4 161594460 161594510 -40733837 - MIR SINE MIR -150 112 63 1347 157 129 11 chr4 161595033 161595319 -40733028 + MSTB LTR MaLR 107 426 0 228 125 83 69 chr4 161595411 161595483 -40732864 - L1M4 LINE L1 -3850 2296 2224 486 253 88 138 chr4 161595483 161595619 -40732728 + L2 LINE L2 2323 2464 -850 777 146 8 8 chr4 161595619 161595742 -40732605 + FLAM_A SINE Alu 1 123 -10 486 253 88 138 chr4 161595742 161595777 -40732570 + L2 LINE L2 2464 2499 -815 2426 88 0 3 chr4 161595777 161596084 -40732263 + AluSg SINE Alu 1 306 -4 486 253 88 138 chr4 161596084 161596223 -40732124 + L2 LINE L2 2499 2604 -710 2209 125 0 3 chr4 161596223 161596526 -40731821 + AluSx SINE Alu 1 302 -10 486 253 88 138 chr4 161596526 161596700 -40731647 + L2 LINE L2 2604 2785 -529 525 176 0 0 chr4 161596712 161596824 -40731523 + AluJb SINE Alu 199 310 0 247 319 52 0 chr4 161596871 161596987 -40731360 - MIR SINE MIR -55 207 86 2013 106 36 0 chr4 161597147 161597421 -40730926 + AluSp SINE Alu 1 284 -29 2433 49 0 11 chr4 161597483 161597797 -40730550 + AluY SINE Alu 1 311 0 1405 128 29 25 chr4 161598012 161598255 -40730092 + MSTA LTR MaLR 185 428 0 591 293 92 4 chr4 161598330 161598569 -40729778 - MIR SINE MIR 0 262 3 2367 101 0 7 chr4 161598757 161599065 -40729282 + AluSc SINE Alu 1 306 -3 253 257 219 0 chr4 161599065 161599170 -40729177 + MER5A DNA MER1_type 62 189 0 2464 87 0 0 chr4 161599274 161599572 -40728775 + AluSq SINE Alu 1 298 -15 1839 154 7 10 chr4 161599580 161599878 -40728469 + AluJb SINE Alu 7 303 -9 3057 143 63 11 chr4 161599879 161600087 -40728260 - Tigger3b DNA MER2_type -2475 553 357 221 0 0 33 chr4 161600087 161600117 -40728230 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2194 103 7 0 chr4 161600119 161600401 -40727946 - AluSx SINE Alu -28 284 1 3057 143 63 11 chr4 161600401 161600715 -40727632 - Tigger3b DNA MER2_type -2671 357 1 1364 238 54 0 chr4 161601449 161601798 -40726549 + MER63B DNA MER1_type 1 368 -68 655 181 0 67 chr4 161601911 161601944 -40726403 + FLAM_A SINE Alu 1 35 -276 2726 82 11 13 chr4 161601944 161602320 -40726027 - THE1C LTR MaLR 0 375 1 655 181 0 67 chr4 161602320 161602435 -40725912 + FLAM_A SINE Alu 35 139 -172 1819 155 7 3 chr4 161602948 161603239 -40725108 + AluJo SINE Alu 7 298 -14 2138 110 21 0 chr4 161603615 161603906 -40724441 + AluSx SINE Alu 1 297 -15 563 221 233 6 chr4 161604002 161604174 -40724173 + MER58C DNA MER1_type 5 215 0 455 323 44 22 chr4 161604174 161604400 -40723947 + Charlie8 DNA MER1_type 2 232 -2185 244 77 128 0 chr4 161604543 161604582 -40723765 + MER49 LTR ERV1 847 890 -33 412 323 42 21 chr4 161604593 161604927 -40723420 - L1M4 LINE L1 -1526 4620 4280 1924 124 0 8 chr4 161605837 161606104 -40722243 + AluJo SINE Alu 11 275 -37 2448 70 3 19 chr4 161606492 161606807 -40721540 + AluY SINE Alu 2 311 0 344 264 11 0 chr4 161607207 161607294 -40721053 - MIR SINE MIR -127 135 48 252 272 109 11 chr4 161607444 161607536 -40720811 + MIR SINE MIR 98 198 -64 2082 122 3 7 chr4 161608147 161608450 -40719897 - AluSp SINE Alu -11 302 1 1508 173 4 29 chr4 161608905 161609177 -40719170 + AluJo SINE Alu 1 265 -47 2572 61 0 0 chr4 161609509 161609805 -40718542 + AluY SINE Alu 1 296 -15 227 283 17 0 chr4 161609898 161609958 -40718389 + MIR3 SINE MIR 116 176 -32 268 156 22 0 chr4 161611926 161611971 -40716376 - MLT2A2 LTR ERVL 0 453 408 209 136 0 23 chr4 161611973 161612017 -40716330 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 189 0 0 0 chr4 161612017 161612038 -40716309 + (TCCC)n Simple_repeat Simple_repeat 4 24 0 3032 59 32 34 chr4 161612044 161612453 -40715894 - MLT2A2 LTR ERVL -45 408 1 4259 92 4 0 chr4 161612583 161613135 -40715212 - MER41A LTR ERV1 0 554 1 433 259 182 29 chr4 161614201 161614371 -40713976 - MLT1J LTR MaLR -315 196 1 225 0 0 0 chr4 161614789 161614814 -40713533 + (T)n Simple_repeat Simple_repeat 1 25 0 2435 80 3 3 chr4 161615125 161615438 -40712909 + AluSp SINE Alu 1 313 0 201 277 36 36 chr4 161615667 161615750 -40712597 + L2 LINE L2 3001 3083 -189 201 273 50 20 chr4 161616853 161616952 -40711395 - L2 LINE L2 -981 2333 2232 420 227 127 9 chr4 161616963 161617073 -40711274 - LTR67 LTR ERVL -24 533 411 305 293 102 49 chr4 161617199 161617404 -40710943 - LTR67 LTR ERVL -337 220 5 1029 248 198 62 chr4 161618181 161618992 -40709355 + L2 LINE L2 2046 3036 -277 2324 88 0 7 chr4 161618992 161619298 -40709049 + AluSc SINE Alu 1 304 -5 1029 248 198 62 chr4 161619298 161619550 -40708797 + L2 LINE L2 3036 3252 -61 2298 99 7 3 chr4 161620440 161620743 -40707604 + AluSp SINE Alu 1 304 -9 321 310 39 8 chr4 161620762 161620891 -40707456 + MLT1K LTR MaLR 454 586 -2 708 193 0 14 chr4 161621126 161621266 -40707081 + L1MB8 LINE L1 6032 6169 -9 21 0 0 0 chr4 161621266 161621287 -40707060 + AT_rich Low_complexity Low_complexity 1 21 0 273 311 19 28 chr4 161622449 161622555 -40705792 + MER5A DNA MER1_type 64 168 -21 290 267 53 15 chr4 161622735 161622866 -40705481 - LTR67 LTR ERVL -43 514 379 21 0 0 0 chr4 161624061 161624082 -40704265 + AT_rich Low_complexity Low_complexity 1 21 0 1810 140 4 14 chr4 161626153 161626432 -40701915 + AluSx SINE Alu 5 280 -32 1305 180 24 69 chr4 161626672 161626961 -40701386 + AluJo SINE Alu 25 300 -12 1617 175 34 7 chr4 161626963 161627260 -40701087 + AluJb SINE Alu 2 306 -6 2335 88 3 7 chr4 161627982 161628289 -40700058 - AluY SINE Alu -5 306 1 2234 121 0 0 chr4 161629187 161629477 -40698870 + AluSg SINE Alu 1 290 -20 1625 199 57 37 chr4 161629834 161630292 -40698055 + MLT1C LTR MaLR 1 467 0 180 0 0 0 chr4 161631224 161631244 -40697103 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 243 0 0 0 chr4 161631243 161631270 -40697077 + (CA)n Simple_repeat Simple_repeat 1 27 0 964 172 27 11 chr4 161631815 161632001 -40696346 - MER5A DNA MER1_type 0 189 1 616 284 75 11 chr4 161632288 161632556 -40695791 + MLT1L LTR MaLR 323 607 -8 371 252 109 19 chr4 161632943 161633126 -40695221 + MIR SINE MIR 16 212 -50 1556 154 53 14 chr4 161634240 161634525 -40693822 - AluJo SINE Alu -16 296 1 24 53 0 0 chr4 161634915 161634953 -40693394 + AT_rich Low_complexity Low_complexity 1 38 0 189 0 0 0 chr4 161634953 161634974 -40693373 + (A)n Simple_repeat Simple_repeat 1 21 0 218 205 0 0 chr4 161635159 161635198 -40693149 + (TG)n Simple_repeat Simple_repeat 2 40 0 241 327 40 104 chr4 161635203 161635530 -40692817 + L3 LINE CR1 758 1063 -514 1815 139 0 43 chr4 161635584 161635887 -40692460 + AluJo SINE Alu 5 294 -18 221 53 53 0 chr4 161635907 161635945 -40692402 + GA-rich Low_complexity Low_complexity 5 44 0 357 291 70 6 chr4 161636088 161636246 -40692101 + L3 LINE CR1 1320 1487 -90 2404 88 3 0 chr4 161636262 161636557 -40691790 + AluSc SINE Alu 1 296 -13 213 39 0 0 chr4 161638082 161638108 -40690239 + (T)n Simple_repeat Simple_repeat 1 26 0 410 258 66 60 chr4 161638559 161638741 -40689606 - MLT1L LTR MaLR -10 605 423 1980 156 0 3 chr4 161638825 161639126 -40689221 + AluJb SINE Alu 1 300 -12 1645 166 38 14 chr4 161639135 161639424 -40688923 + AluJb SINE Alu 1 296 -16 4040 91 72 31 chr4 161640068 161640650 -40687697 + MER4A LTR ERV1 1 613 -51 2164 106 3 16 chr4 161640650 161640953 -40687394 - AluSx SINE Alu -13 299 1 4040 91 72 31 chr4 161640953 161641006 -40687341 + MER4A LTR ERV1 613 662 -2 244 250 138 17 chr4 161641628 161641744 -40686603 - L1ME LINE L1 -364 5757 5628 370 237 245 7 chr4 161641809 161641948 -40686399 - MIR SINE MIR -56 206 35 606 239 86 25 chr4 161642112 161642309 -40686038 - MIR SINE MIR -20 242 34 2206 105 7 3 chr4 161642313 161642608 -40685739 - AluSg SINE Alu -14 296 1 2530 73 0 0 chr4 161642619 161642922 -40685425 - AluY SINE Alu -8 303 1 1602 105 35 4 chr4 161643267 161643495 -40684852 + AluSg SINE Alu 59 293 -17 312 336 44 15 chr4 161644078 161644215 -40684132 - MIR3 SINE MIR -26 182 42 180 0 0 0 chr4 161644688 161644708 -40683639 + (A)n Simple_repeat Simple_repeat 1 20 0 239 279 52 44 chr4 161646115 161646251 -40682096 - L2 LINE L2 0 3272 3136 1833 182 8 19 chr4 161646963 161647337 -40681010 + L1MB3 LINE L1 5814 6183 0 1656 134 7 64 chr4 161648371 161648669 -40679678 - AluJo SINE Alu -30 282 2 258 83 0 28 chr4 161651294 161651330 -40677017 - MER69 DNA AcHobo -3 2523 2489 438 229 10 0 chr4 161651377 161651473 -40676874 - MER69 DNA AcHobo -1082 144 48 628 255 91 64 chr4 161651628 161651715 -40676632 + L1ME4a LINE L1 5393 5476 -645 2308 103 0 3 chr4 161651715 161652025 -40676322 + AluSg SINE Alu 1 309 -1 628 255 91 64 chr4 161652025 161652310 -40676037 + L1ME4a LINE L1 5476 5775 -346 1680 175 0 0 chr4 161652310 161652573 -40675774 + AluJb SINE Alu 1 263 -49 628 255 91 64 chr4 161652573 161652704 -40675643 + L1ME4a LINE L1 5775 5901 -220 22 0 0 0 chr4 161652715 161652737 -40675610 + AT_rich Low_complexity Low_complexity 1 22 0 271 156 0 31 chr4 161652751 161652815 -40675532 + L1MB7 LINE L1 5282 5343 -803 633 165 128 0 chr4 161652818 161652927 -40675420 + FLAM_C SINE Alu 10 132 -11 3910 146 48 63 chr4 161652927 161653728 -40674619 + L1MB7 LINE L1 5323 6112 -72 2147 112 7 3 chr4 161653728 161654032 -40674315 + AluSx SINE Alu 1 305 -7 3910 146 48 63 chr4 161654032 161654100 -40674247 + L1MB7 LINE L1 6112 6179 -5 356 236 79 84 chr4 161654161 161654339 -40674008 + MIR SINE MIR 71 247 -15 377 314 81 6 chr4 161654584 161654756 -40673591 - MIR SINE MIR -55 207 23 207 0 0 0 chr4 161655557 161655580 -40672767 + (T)n Simple_repeat Simple_repeat 1 23 0 2372 85 3 3 chr4 161655789 161656084 -40672263 - AluSq SINE Alu -18 295 1 182 288 123 0 chr4 161656095 161656168 -40672179 - L2 LINE L2 0 3313 3232 1680 141 42 59 chr4 161656446 161656752 -40671595 + AluJb SINE Alu 3 303 -9 249 333 29 58 chr4 161656954 161657128 -40671219 + L3b LINE CR1 1102 1270 -313 754 161 0 46 chr4 161657189 161657319 -40671028 - AluJb SINE Alu -187 125 2 379 156 26 13 chr4 161657486 161657563 -40670784 + L1MB3 LINE L1 6096 6173 -10 2236 103 3 0 chr4 161657879 161658170 -40670177 - AluSp SINE Alu -21 292 1 2235 45 39 62 chr4 161658270 161658579 -40669768 - AluY SINE Alu -9 302 1 22 56 0 0 chr4 161658821 161658857 -40669490 + AT_rich Low_complexity Low_complexity 1 36 0 1862 149 3 23 chr4 161658861 161659170 -40669177 + AluJo SINE Alu 3 305 -7 2037 158 0 0 chr4 161659496 161659806 -40668541 + AluSx SINE Alu 1 310 -2 759 146 0 0 chr4 161660057 161660197 -40668150 + AluSg/x SINE Alu 187 326 0 963 188 6 0 chr4 161660601 161660766 -40667581 + FAM SINE Alu 2 167 -8 2401 83 0 0 chr4 161660768 161661069 -40667278 + AluSx SINE Alu 1 301 -11 786 229 38 0 chr4 161661172 161661329 -40667018 + FRAM SINE Alu 1 163 -3 2404 67 0 13 chr4 161661454 161661754 -40666593 + AluY SINE Alu 1 296 -15 2335 95 0 0 chr4 161661838 161662133 -40666214 + AluSg SINE Alu 1 295 -15 211 385 18 18 chr4 161662260 161662369 -40665978 - MIR3 SINE MIR -54 154 46 835 149 83 0 chr4 161662730 161662898 -40665449 + L1MA8 LINE L1 6105 6286 -5 1782 171 0 29 chr4 161663231 161663546 -40664801 + AluJo SINE Alu 1 306 -6 192 40 0 0 chr4 161664766 161664791 -40663556 + (TC)n Simple_repeat Simple_repeat 2 26 0 1641 171 75 4 chr4 161664791 161665071 -40663276 - AluJo SINE Alu -9 303 4 1614 124 54 4 chr4 161665086 161665328 -40663019 - AluSx SINE Alu -19 293 40 2429 81 3 0 chr4 161665726 161666022 -40662325 + AluY SINE Alu 1 297 -14 2371 99 0 0 chr4 161668107 161668401 -40659946 + AluSg SINE Alu 1 294 -16 186 268 175 10 chr4 161668567 161668664 -40659683 + L2 LINE L2 3198 3310 -3 3184 166 86 17 chr4 161668739 161669827 -40658520 + L1MB7 LINE L1 4802 5966 -212 772 128 19 83 chr4 161669833 161669989 -40658358 + L1MB7 LINE L1 6039 6184 0 306 311 128 57 chr4 161670415 161670820 -40657527 - L2 LINE L2 -341 2973 2540 21 0 0 0 chr4 161671145 161671166 -40657181 + AT_rich Low_complexity Low_complexity 1 21 0 192 218 36 0 chr4 161671284 161671339 -40657008 + L2 LINE L2 3215 3271 -1 396 323 55 43 chr4 161671668 161671925 -40656422 + L1MB8 LINE L1 5560 5819 -302 1582 136 110 4 chr4 161672372 161672645 -40655702 + AluJb SINE Alu 1 302 -10 249 208 19 19 chr4 161677441 161677494 -40650853 - MER2 DNA MER2_type -25 320 268 963 128 133 43 chr4 161677528 161677588 -40650759 - MER2 DNA MER2_type -140 205 152 2016 156 0 10 chr4 161677588 161677895 -40650452 - AluJo SINE Alu -8 304 1 963 128 133 43 chr4 161677895 161678022 -40650325 - MER2 DNA MER2_type -193 152 1 1889 146 0 14 chr4 161678223 161678517 -40649830 - AluSx SINE Alu -22 290 1 1858 162 7 3 chr4 161678862 161679159 -40649188 + AluSx SINE Alu 1 298 -14 2384 72 0 7 chr4 161679892 161680196 -40648151 + AluY SINE Alu 1 302 -9 2112 110 3 0 chr4 161681065 161681347 -40647000 + AluSc SINE Alu 2 284 -25 1861 155 0 7 chr4 161681370 161681680 -40646667 + AluJb SINE Alu 1 308 -4 24 32 0 0 chr4 161682503 161682534 -40645813 + AT_rich Low_complexity Low_complexity 1 31 0 2036 109 26 10 chr4 161682663 161682837 -40645510 - AluSx SINE Alu -3 309 126 2395 48 0 10 chr4 161682837 161683150 -40645197 - AluY SINE Alu 0 311 1 2036 109 26 10 chr4 161683150 161683279 -40645068 - AluSx SINE Alu -186 126 1 22 35 0 0 chr4 161684355 161684384 -40643963 + AT_rich Low_complexity Low_complexity 1 29 0 429 117 320 0 chr4 161684461 161684564 -40643783 + L1MC3 LINE L1 6961 7096 -689 1087 207 14 0 chr4 161684599 161684821 -40643526 + L1MC3 LINE L1 7559 7783 -2 746 194 43 32 chr4 161685224 161685410 -40642937 + L1MB8 LINE L1 5991 6178 0 274 259 47 0 chr4 161685430 161685515 -40642832 - MER112 DNA MER1_type -92 168 80 21 0 0 0 chr4 161685593 161685614 -40642733 + AT_rich Low_complexity Low_complexity 1 21 0 355 281 137 53 chr4 161685831 161686190 -40642157 + L2 LINE L2 2216 2604 -710 909 204 123 66 chr4 161686221 161686487 -40641860 - Charlie2 DNA MER1_type -71 2791 2542 2297 88 20 0 chr4 161686487 161686792 -40641555 - AluY SINE Alu 0 311 1 909 204 123 66 chr4 161686792 161686949 -40641398 - Charlie2 DNA MER1_type -320 2542 2340 2149 128 0 0 chr4 161686949 161687245 -40641102 + AluSx SINE Alu 1 296 -16 909 204 123 66 chr4 161687245 161687260 -40641087 - Charlie2 DNA MER1_type -522 2340 2327 2054 124 54 6 chr4 161687277 161687592 -40640755 + MER2 DNA MER2_type 16 345 0 1608 216 92 16 chr4 161687592 161688036 -40640311 - Charlie2 DNA MER1_type -527 2335 1858 592 254 223 15 chr4 161688042 161688302 -40640045 - Charlie2 DNA MER1_type -2459 323 10 1882 126 0 11 chr4 161688352 161688614 -40639733 + AluSx SINE Alu 1 259 -53 451 277 125 16 chr4 161688614 161688874 -40639473 + L2 LINE L2 2734 3046 -267 2116 132 0 0 chr4 161689393 161689696 -40638651 - AluSg SINE Alu -7 303 1 533 266 85 50 chr4 161690417 161690731 -40637616 + L2 LINE L2 2925 3293 -20 434 259 226 5 chr4 161690911 161691123 -40637224 + MIR SINE MIR 1 259 -3 2274 113 0 3 chr4 161691922 161692233 -40636114 + AluSg SINE Alu 1 310 0 338 257 157 14 chr4 161692941 161693081 -40635266 - MIR SINE MIR -72 190 31 2111 109 7 0 chr4 161693246 161693562 -40634785 - AluSp SINE Alu 0 318 1 234 0 0 0 chr4 161693867 161693893 -40634454 + (TG)n Simple_repeat Simple_repeat 2 27 0 1086 140 12 111 chr4 161694370 161694613 -40633734 + MER20 DNA MER1_type 1 219 0 21 0 0 0 chr4 161694625 161694646 -40633701 + AT_rich Low_complexity Low_complexity 1 21 0 295 216 62 10 chr4 161694671 161694768 -40633579 + L1ME4a LINE L1 6020 6121 0 300 92 0 46 chr4 161695884 161695949 -40632398 + (CCCCG)n Simple_repeat Simple_repeat 1 62 0 21 36 0 0 chr4 161696099 161696127 -40632220 + GC_rich Low_complexity Low_complexity 1 28 0 245 143 0 20 chr4 161697213 161697262 -40631085 + (CA)n Simple_repeat Simple_repeat 1 48 0 2406 68 0 14 chr4 161697598 161697893 -40630454 - AluY SINE Alu -20 291 1 1552 194 7 3 chr4 161698343 161698636 -40629711 + AluJb SINE Alu 18 311 -1 1851 145 9 35 chr4 161698849 161699167 -40629180 - AluJb SINE Alu -2 310 1 1694 97 162 15 chr4 161699417 161699676 -40628671 - AluSc SINE Alu 0 299 3 619 200 249 24 chr4 161700011 161700216 -40628131 + MIR SINE MIR 2 252 -10 30 0 0 0 chr4 161700298 161700328 -40628019 + AT_rich Low_complexity Low_complexity 1 30 0 486 274 42 32 chr4 161701080 161701270 -40627077 - MIR SINE MIR 0 262 71 814 181 0 15 chr4 161701378 161701511 -40626836 - FLAM_A SINE Alu -1 132 2 811 241 35 5 chr4 161701595 161701798 -40626549 - MER3 DNA MER1_type 0 209 1 25 90 0 0 chr4 161702215 161702282 -40626065 + AT_rich Low_complexity Low_complexity 1 67 0 1728 181 7 10 chr4 161703024 161703322 -40625025 + AluJb SINE Alu 2 298 -14 22 35 0 0 chr4 161703729 161703758 -40624589 + AT_rich Low_complexity Low_complexity 1 29 0 240 143 0 24 chr4 161703997 161704039 -40624308 + MER91B DNA MER1_type 24 64 -126 1702 170 9 31 chr4 161705379 161705697 -40622650 - AluJo SINE Alu -1 311 1 1462 165 7 86 chr4 161705897 161706200 -40622147 + AluJo SINE Alu 4 282 -30 1478 198 91 13 chr4 161706213 161706597 -40621750 + L1MEc LINE L1 1197 1610 -5215 859 145 0 22 chr4 161706609 161706747 -40621600 + AluJo SINE Alu 1 135 -177 408 229 43 48 chr4 161706758 161706952 -40621395 + L1MEc LINE L1 1561 1657 -4885 1606 147 15 0 chr4 161707398 161707657 -40620690 + AluSx SINE Alu 37 299 -13 3323 232 84 39 chr4 161707846 161708359 -40619988 + L1M4 LINE L1 5 494 -6048 1473 204 64 0 chr4 161708359 161708639 -40619708 + AluJo SINE Alu 1 298 -14 3323 232 84 39 chr4 161708639 161709103 -40619244 + L1M4 LINE L1 494 1026 -5516 921 115 0 31 chr4 161709103 161709233 -40619114 - AluSg/x SINE Alu -29 281 156 27 0 0 0 chr4 161709237 161709264 -40619083 + AT_rich Low_complexity Low_complexity 1 27 0 1230 164 56 0 chr4 161709265 161709460 -40618887 - AluJb SINE Alu -20 292 87 748 180 102 18 chr4 161709461 161709657 -40618690 + L1M4 LINE L1 1028 1217 -5325 2265 94 3 35 chr4 161709661 161709979 -40618368 - AluSc SINE Alu -1 308 1 2070 100 31 14 chr4 161709979 161710268 -40618079 - AluSq SINE Alu -19 294 1 1054 165 0 44 chr4 161710342 161710524 -40617823 - AluJo SINE Alu -138 174 1 3595 175 58 23 chr4 161710524 161710781 -40617566 + L1ME LINE L1 4531 4778 -1388 2171 75 11 0 chr4 161710781 161711046 -40617301 + AluY SINE Alu 35 302 -9 3595 175 58 23 chr4 161711046 161711300 -40617047 + L1ME LINE L1 4778 5022 -1144 2259 83 14 0 chr4 161711300 161711589 -40616758 - AluY SINE Alu -18 293 1 3595 175 58 23 chr4 161711589 161711729 -40616618 + L1ME LINE L1 5022 5156 -1010 2287 103 13 0 chr4 161711729 161712031 -40616316 + AluSx SINE Alu 1 306 -6 3595 175 58 23 chr4 161712031 161712272 -40616075 + L1ME LINE L1 5156 5454 -712 408 94 0 0 chr4 161712273 161712326 -40616021 - THE1B LTR MaLR -2 362 310 207 0 0 0 chr4 161712473 161712496 -40615851 + (T)n Simple_repeat Simple_repeat 1 23 0 2416 84 0 3 chr4 161712705 161713001 -40615346 - AluSq SINE Alu -18 295 1 182 288 123 0 chr4 161713012 161713085 -40615262 - L2 LINE L2 0 3313 3232 1741 131 42 59 chr4 161713363 161713669 -40614678 + AluJb SINE Alu 3 303 -9 249 333 29 58 chr4 161713871 161714045 -40614302 + L3b LINE CR1 1102 1270 -313 754 161 0 46 chr4 161714106 161714236 -40614111 - AluJb SINE Alu -187 125 2 348 169 26 13 chr4 161714403 161714480 -40613867 + L1MB3 LINE L1 6096 6173 -10 2236 103 3 0 chr4 161714796 161715087 -40613260 - AluSp SINE Alu -21 292 1 2264 42 39 62 chr4 161715187 161715496 -40612851 - AluY SINE Alu -9 302 1 22 56 0 0 chr4 161715738 161715774 -40612573 + AT_rich Low_complexity Low_complexity 1 36 0 1862 149 3 23 chr4 161715778 161716087 -40612260 + AluJo SINE Alu 3 305 -7 2037 158 0 0 chr4 161716413 161716723 -40611624 + AluSx SINE Alu 1 310 -2 759 146 0 0 chr4 161716974 161717114 -40611233 + AluSg/x SINE Alu 187 326 0 963 188 6 0 chr4 161717518 161717683 -40610664 + FAM SINE Alu 2 167 -8 2351 83 7 0 chr4 161717685 161718010 -40610337 + AluSq SINE Alu 1 327 0 2269 72 0 41 chr4 161718122 161718440 -40609907 - AluSg SINE Alu -5 305 1 2150 90 78 3 chr4 161718533 161718878 -40609469 + L1MB3 LINE L1 5804 6174 -9 827 175 0 0 chr4 161719707 161719833 -40608514 - FLAM_A SINE Alu -1 141 16 1430 172 36 46 chr4 161720251 161720554 -40607793 + AluJo SINE Alu 12 311 -1 1791 150 7 4 chr4 161720562 161720836 -40607511 + AluSx SINE Alu 27 301 -11 1448 164 0 17 chr4 161721083 161721315 -40607032 - AluJb SINE Alu -84 228 1 2118 110 0 4 chr4 161721326 161721628 -40606719 - AluSc SINE Alu 0 303 3 201 39 0 0 chr4 161721630 161721656 -40606691 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1945 151 3 3 chr4 161721656 161721947 -40606400 - AluSx SINE Alu -21 291 1 246 322 156 65 chr4 161721974 161722432 -40605915 + L2 LINE L2 2737 3271 -1 286 157 59 0 chr4 161722557 161722608 -40605739 - L1MA7 LINE L1 -7 6284 6231 2351 85 14 0 chr4 161723144 161723439 -40604908 + AluSp SINE Alu 1 299 -14 344 248 120 100 chr4 161724760 161724900 -40603447 - MIR SINE MIR -5 257 108 2213 120 0 7 chr4 161724900 161725201 -40603146 + AluJb SINE Alu 1 299 -13 344 248 120 100 chr4 161725201 161725310 -40603037 - MIR SINE MIR -154 108 3 267 333 110 55 chr4 161725410 161725665 -40602682 - L2 LINE L2 0 3272 3004 502 118 0 15 chr4 161725772 161725840 -40602507 + AluJ/FRAM SINE Alu 225 291 -21 1313 131 42 0 chr4 161725989 161726180 -40602167 - AluJb SINE Alu -113 199 1 1861 167 0 10 chr4 161726810 161727110 -40601237 - AluJb SINE Alu -15 297 1 2527 70 0 0 chr4 161727195 161727494 -40600853 - AluY SINE Alu -12 299 1 1644 178 37 10 chr4 161727508 161727806 -40600541 - AluJo SINE Alu 0 312 7 2423 94 0 0 chr4 161727836 161728145 -40600202 - AluSg SINE Alu -1 309 1 2079 131 14 0 chr4 161728193 161728490 -40599857 - AluSx SINE Alu -11 301 1 930 102 23 8 chr4 161728756 161728884 -40599463 - AluSq/x SINE Alu -182 130 1 1491 127 5 14 chr4 161728951 161729172 -40599175 + AluSg/x SINE Alu 85 303 -7 435 38 0 0 chr4 161729385 161729438 -40598909 + (CA)n Simple_repeat Simple_repeat 2 54 0 1546 187 66 7 chr4 161729474 161729763 -40598584 - AluJb SINE Alu -6 306 1 788 222 37 37 chr4 161730257 161730446 -40597901 - MER5A DNA MER1_type 0 189 1 2131 120 3 0 chr4 161730667 161730977 -40597370 + AluSx SINE Alu 1 311 0 2672 205 29 54 chr4 161731036 161731684 -40596663 + LTR27 LTR ERV1 3 634 -2 1943 146 17 7 chr4 161731825 161732119 -40596228 - AluJo SINE Alu -15 297 1 1540 172 61 27 chr4 161732553 161732849 -40595498 - AluJo SINE Alu -6 306 1 233 246 15 0 chr4 161733158 161733223 -40595124 + L1ME4a LINE L1 5960 6025 -96 1834 120 0 0 chr4 161733586 161733836 -40594511 - AluSg SINE Alu -5 305 56 1678 151 4 25 chr4 161733837 161734115 -40594232 - AluJo SINE Alu -38 274 3 206 118 0 0 chr4 161734126 161734160 -40594187 + (A)n Simple_repeat Simple_repeat 1 34 0 1103 182 26 0 chr4 161734167 161734359 -40593988 - L1MC1 LINE L1 -16 6317 6121 1962 178 0 0 chr4 161734582 161734891 -40593456 - AluJb SINE Alu -1 311 3 1723 144 3 78 chr4 161735734 161736068 -40592279 + AluJo SINE Alu 1 309 -3 267 136 0 0 chr4 161738154 161738213 -40590134 + (CA)n Simple_repeat Simple_repeat 2 60 0 336 24 0 0 chr4 161738213 161738254 -40590093 + (CAT)n Simple_repeat Simple_repeat 1 41 0 1833 177 0 3 chr4 161738628 161738928 -40589419 + AluSx SINE Alu 1 299 -13 2167 89 0 7 chr4 161740914 161741195 -40587152 + AluSx SINE Alu 1 279 -33 345 47 0 0 chr4 161741196 161741239 -40587108 + (CA)n Simple_repeat Simple_repeat 2 44 0 1599 127 4 4 chr4 161741502 161741739 -40586608 - MER83 LTR ERV1 0 448 212 2027 133 3 0 chr4 161742117 161742410 -40585937 - AluSq SINE Alu -18 295 2 1765 183 0 10 chr4 161742583 161742884 -40585463 - AluJo SINE Alu -2 310 13 473 225 75 68 chr4 161742911 161743164 -40585183 - MER57A LTR ERV1 -162 241 1 877 154 62 92 chr4 161743258 161743485 -40584862 + MER106A DNA MER1_type 17 236 0 514 210 20 0 chr4 161743492 161743592 -40584755 + MER94 DNA DNA 5 106 -28 674 193 44 1 chr4 161743867 161744078 -40584269 + MER45C DNA AcHobo 706 952 -1 409 226 124 15 chr4 161744080 161744217 -40584130 + L2 LINE L2 3158 3309 -4 280 333 70 23 chr4 161744233 161744362 -40583985 + L2 LINE L2 3126 3260 -12 716 168 8 24 chr4 161744701 161744826 -40583521 - FLAM_A SINE Alu -10 123 1 1604 131 17 48 chr4 161744977 161745268 -40583079 + AluJb SINE Alu 17 298 -14 22 0 0 0 chr4 161745533 161745555 -40582792 + AT_rich Low_complexity Low_complexity 1 22 0 332 237 0 13 chr4 161747151 161747227 -40581120 + MLT1I LTR MaLR 66 140 -269 24 32 0 0 chr4 161748687 161748718 -40579629 + AT_rich Low_complexity Low_complexity 1 31 0 2010 157 26 0 chr4 161748962 161749274 -40579073 + 7SLRNA srpRNA srpRNA 1 320 0 330 0 60 0 chr4 161749284 161749334 -40579013 + (TA)n Simple_repeat Simple_repeat 2 54 0 2421 75 0 0 chr4 161749779 161750072 -40578275 + AluY SINE Alu 1 293 -18 471 252 233 35 chr4 161750322 161750639 -40577708 + MLT1L LTR MaLR 3 382 -233 444 308 49 0 chr4 161750694 161750837 -40577510 + MLT1L LTR MaLR 466 615 0 1266 209 45 0 chr4 161750959 161751101 -40577246 - AluJo SINE Alu -32 280 146 2481 91 0 0 chr4 161751101 161751408 -40576939 - AluSg SINE Alu -3 307 1 198 0 0 0 chr4 161751416 161751438 -40576909 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1266 209 45 0 chr4 161751438 161751554 -40576793 - AluJo SINE Alu -172 140 1 2417 89 0 6 chr4 161751658 161751971 -40576376 - AluY SINE Alu 0 311 1 411 222 121 0 chr4 161752433 161752532 -40575815 - MER103 DNA DNA -54 112 2 313 309 0 32 chr4 161753150 161753244 -40575103 - MIR SINE MIR -170 92 2 * 349 378 63 54 chr4 161753244 161753546 -40574801 + L2 LINE L2 2967 3271 -1 223 299 117 0 chr4 161754062 161754139 -40574208 - L2 LINE L2 -1 3271 3186 783 288 62 4 chr4 161755502 161755728 -40572619 + MIR SINE MIR 14 252 -10 224 297 69 76 chr4 161756594 161756739 -40571608 + L2 LINE L2 3169 3312 -1 384 314 133 13 chr4 161756790 161757016 -40571331 - MIR SINE MIR -8 254 2 180 233 0 0 chr4 161757669 161757712 -40570635 + L2 LINE L2 3270 3312 -1 653 242 60 52 chr4 161757754 161758115 -40570232 + L1MEc LINE L1 2179 2550 -3665 690 229 72 51 chr4 161758125 161758395 -40569952 + L1ME1 LINE L1 5764 6001 -165 599 221 0 19 chr4 161758399 161758557 -40569790 + L1MA10 LINE L1 6179 6333 -1 9810 119 54 22 chr4 161758643 161760159 -40568188 + Tigger1 DNA MER2_type 1 1574 -844 2036 131 3 0 chr4 161760159 161760442 -40567905 + AluSx SINE Alu 1 284 -28 9810 119 54 22 chr4 161760442 161760544 -40567803 + Tigger1 DNA MER2_type 1574 1671 -747 1372 148 34 0 chr4 161760657 161760893 -40567454 + Tigger1 DNA MER2_type 2175 2418 0 1354 238 48 115 chr4 161760893 161761452 -40566895 + MLT1E LTR MaLR 47 567 0 309 324 40 17 chr4 161761766 161761939 -40566408 - MLT1J LTR MaLR -332 179 3 4373 168 9 48 chr4 161762272 161763164 -40565183 + L1MB8 LINE L1 5322 6178 0 955 233 92 0 chr4 161763313 161763541 -40564806 + MIR SINE MIR 14 262 0 1179 247 100 19 chr4 161763735 161763920 -40564427 + L2 LINE L2 2255 2424 -890 946 206 88 84 chr4 161763920 161764385 -40563962 + MLT1C LTR MaLR 1 467 0 1179 247 100 19 chr4 161764385 161764519 -40563828 + L2 LINE L2 2424 2600 -714 961 146 12 24 chr4 161764522 161764687 -40563660 + FRAM SINE Alu 1 163 -3 28 0 0 0 chr4 161764724 161764752 -40563595 + AT_rich Low_complexity Low_complexity 1 28 0 241 277 46 0 chr4 161764752 161764817 -40563530 + L2 LINE L2 2587 2654 -660 * 300 221 26 78 chr4 161764815 161764892 -40563455 + L2 LINE L2 3230 3302 -11 369 256 13 90 chr4 161764972 161765128 -40563219 + LTR67 LTR ERVL 25 168 -389 975 118 13 0 chr4 161765264 161765417 -40562930 - L1MB3 LINE L1 -212 5971 5817 961 179 0 0 chr4 161765417 161765573 -40562774 + FRAM SINE Alu 8 163 -13 1835 128 61 46 chr4 161765573 161765753 -40562594 - L1MB3 LINE L1 -341 5830 5641 1488 188 4 7 chr4 161765753 161766030 -40562317 - AluJo SINE Alu -14 298 23 1835 128 61 46 chr4 161766030 161766194 -40562153 - L1MB3 LINE L1 -530 5641 5481 25 31 0 0 chr4 161766195 161766227 -40562120 + AT_rich Low_complexity Low_complexity 1 32 0 693 159 0 0 chr4 161766227 161766334 -40562013 - FLAM_C SINE Alu -36 107 1 303 161 36 0 chr4 161766334 161766390 -40561957 - L1MB3 LINE L1 -682 5489 5432 334 345 128 4 chr4 161766412 161766661 -40561686 + L2 LINE L2 2614 2893 -421 2270 113 0 0 chr4 161766774 161767074 -40561273 + AluSq SINE Alu 1 300 -13 512 245 69 73 chr4 161767498 161767669 -40560678 + L1MEd LINE L1 660 830 -5289 2335 117 92 2 chr4 161767669 161768062 -40560285 - MSTA LTR MaLR 0 428 1 512 245 69 73 chr4 161768062 161768383 -40559964 + L1MEd LINE L1 830 1150 -4969 2289 67 27 3 chr4 161768429 161768728 -40559619 - AluY SINE Alu -5 306 1 413 253 176 20 chr4 161768856 161769101 -40559246 + HAL1 LINE L1 1431 1713 -794 1642 148 33 7 chr4 161769154 161769425 -40558922 + AluJb SINE Alu 1 278 -34 331 272 0 22 chr4 161769454 161769546 -40558801 + L1MC4 LINE L1 6614 6703 -1339 212 215 0 11 chr4 161769586 161769679 -40558668 + (TA)n Simple_repeat Simple_repeat 2 93 0 222 37 0 0 chr4 161769679 161769706 -40558641 + (CA)n Simple_repeat Simple_repeat 2 28 0 5607 168 48 14 chr4 161769741 161770200 -40558147 + L1MC2 LINE L1 4927 5369 -975 2347 104 3 0 chr4 161770200 161770507 -40557840 + AluSq SINE Alu 1 308 -5 5607 168 48 14 chr4 161770507 161771416 -40556931 + L1MC2 LINE L1 5369 6334 -10 408 188 0 0 chr4 161771952 161772021 -40556326 + Tigger3(Golem) DNA MER2_type 2959 3027 -2 228 238 83 29 chr4 161772056 161772144 -40556203 + MIR SINE MIR 30 126 -107 1097 114 62 11 chr4 161772631 161772807 -40555540 + Tigger2a DNA MER2_type 2 186 -248 649 199 0 66 chr4 161772807 161772943 -40555404 + Tigger2a DNA MER2_type 318 444 0 1773 143 0 0 chr4 161773170 161773428 -40554919 + AluSq SINE Alu 7 264 -49 232 91 30 0 chr4 161773432 161773500 -40554847 + AluSq SINE Alu 247 315 0 2355 73 17 10 chr4 161773710 161774011 -40554336 - AluY SINE Alu -8 303 1 534 151 142 38 chr4 161774148 161774254 -40554093 - FLAM_A SINE Alu -16 126 10 1076 160 28 0 chr4 161774704 161774916 -40553431 - L1MA4 LINE L1 -3 6297 6080 1899 160 3 7 chr4 161775111 161775404 -40552943 - AluJb SINE Alu -20 292 1 1273 203 43 50 chr4 161775485 161775809 -40552538 + AluJo SINE Alu 1 312 0 1986 121 0 0 chr4 161776265 161776530 -40551817 + AluSq SINE Alu 1 265 -48 387 180 54 84 chr4 161776622 161776789 -40551558 + L1M4 LINE L1 5121 5282 -864 396 0 0 0 chr4 161776836 161776880 -40551467 + (TA)n Simple_repeat Simple_repeat 2 45 0 859 199 0 45 chr4 161777516 161777692 -40550655 - FRAM SINE Alu -8 168 1 673 228 85 21 chr4 161777699 161777888 -40550459 - MIR SINE MIR -10 252 52 260 193 0 0 chr4 161778427 161778484 -40549863 - L1ME LINE L1 -224 5897 5841 225 292 62 0 chr4 161779576 161779641 -40548706 + MIR SINE MIR 29 97 -165 818 125 16 0 chr4 161781476 161781604 -40546743 + FLAM_C SINE Alu 1 130 -3 568 293 155 35 chr4 161781804 161782411 -40545936 + L2 LINE L2 2183 2862 -452 278 292 97 18 chr4 161782514 161782627 -40545720 + L2 LINE L2 2946 3067 -205 599 238 41 7 chr4 161783128 161783275 -40545072 + MER5B DNA MER1_type 1 152 -26 528 252 0 17 chr4 161785727 161785842 -40542505 + L2 LINE L2 3184 3296 -17 219 139 0 0 chr4 161786661 161786697 -40541650 + (TA)n Simple_repeat Simple_repeat 1 36 0 763 244 12 0 chr4 161788085 161788253 -40540094 - FRAM SINE Alu -5 171 2 776 180 0 0 chr4 161788287 161788415 -40539932 + FLAM_C SINE Alu 2 129 -4 890 209 131 26 chr4 161788895 161789163 -40539184 + MER2 DNA MER2_type 49 344 -1 638 184 34 20 chr4 161789223 161789370 -40538977 - L1MD2 LINE L1 -10 6349 6201 6916 211 65 54 chr4 161789373 161790149 -40538198 - L1MD2 LINE L1 -214 6145 5379 2306 113 0 0 chr4 161790149 161790451 -40537896 - AluSq SINE Alu -11 302 1 6916 211 65 54 chr4 161790451 161791470 -40536877 - L1MD2 LINE L1 -980 5379 4373 1844 171 0 10 chr4 161791470 161791774 -40536573 - AluJo SINE Alu -11 301 1 6916 211 65 54 chr4 161791774 161792953 -40535394 - L1MD2 LINE L1 -1986 4373 3130 2094 124 0 10 chr4 161792953 161793260 -40535087 - AluSx SINE Alu -8 304 1 6916 211 65 54 chr4 161793260 161793516 -40534831 - L1MD2 LINE L1 -3229 3130 2878 1591 201 70 10 chr4 161793516 161793914 -40534433 - Charlie4a DNA MER1_type -69 439 18 2132 127 3 0 chr4 161795807 161796115 -40532232 - AluSx SINE Alu -3 309 1 364 299 79 11 chr4 161796932 161797109 -40531238 + MER117 DNA MER1_type 1 189 -8 460 217 45 25 chr4 161797778 161797935 -40530412 + MER113 DNA MER1_type? 58 217 -304 1183 106 0 0 chr4 161799164 161799350 -40528997 + AluJb SINE Alu 133 318 0 25 0 0 0 chr4 161799694 161799719 -40528628 + AT_rich Low_complexity Low_complexity 1 25 0 2064 119 0 11 chr4 161800371 161800686 -40527661 - AluSg SINE Alu 0 312 1 375 365 16 0 chr4 161801089 161801215 -40527132 + L2 LINE L2 3186 3313 0 310 338 38 8 chr4 161801485 161801618 -40526729 - L2 LINE L2 -8 3264 3128 2195 116 3 0 chr4 161801883 161802186 -40526161 + AluSx SINE Alu 2 305 -7 429 100 0 0 chr4 161802383 161802443 -40525904 - Charlie5 DNA MER1_type -28 2584 2525 2314 92 0 3 chr4 161803073 161803367 -40524980 - AluSq SINE Alu -20 293 1 227 318 85 50 chr4 161804544 161804745 -40523602 + L3 LINE CR1 186 393 -1184 1899 155 10 0 chr4 161804841 161805131 -40523216 - AluJo SINE Alu -17 295 3 2424 56 3 7 chr4 161805143 161805446 -40522901 - AluY SINE Alu -9 302 1 228 337 53 0 chr4 161805580 161805675 -40522672 + L3 LINE CR1 419 518 -1059 732 203 0 15 chr4 161807845 161807978 -40520369 - FLAM_A SINE Alu -1 141 11 2435 8 0 0 chr4 161808011 161808271 -40520076 - AluYa5 SINE Alu -6 305 46 2293 113 0 13 chr4 161808518 161808827 -40519520 + AluSx SINE Alu 1 305 -7 26 50 0 0 chr4 161809476 161809516 -40518831 + AT_rich Low_complexity Low_complexity 1 40 0 3802 19 0 0 chr4 161809662 161810089 -40518258 - L1PA3 LINE L1 -428 5727 5301 4163 18 2 0 chr4 161810089 161810568 -40517779 + L1PA3 LINE L1 5696 6183 0 889 152 8 0 chr4 161810595 161810727 -40517620 + FLAM_C SINE Alu 1 133 0 2063 125 34 14 chr4 161812527 161812824 -40515523 + AluSx SINE Alu 1 303 -9 200 321 0 0 chr4 161812896 161812949 -40515398 + L2 LINE L2 3215 3267 -5 332 221 145 39 chr4 161813034 161813186 -40515161 - MIR SINE MIR -51 211 37 427 277 20 10 chr4 161813337 161813438 -40514909 + L2 LINE L2 3136 3237 -35 21 0 0 0 chr4 161814995 161815016 -40513331 + AT_rich Low_complexity Low_complexity 1 21 0 460 209 12 0 chr4 161815629 161815715 -40512632 + MER63 DNA MER1_type 678 764 -297 435 331 6 0 chr4 161815864 161816033 -40512314 + L2 LINE L2 2147 2316 -998 972 184 70 0 chr4 161816100 161816301 -40512046 - MIR SINE MIR 0 262 48 2012 110 33 0 chr4 161816310 161816583 -40511764 - AluSg SINE Alu -14 296 15 1676 231 20 25 chr4 161816601 161816999 -40511348 + MSTD LTR MaLR 1 396 0 607 265 160 5 chr4 161817091 161817310 -40511037 - MIR SINE MIR -8 254 2 381 274 67 39 chr4 161817624 161817803 -40510544 - MER5A DNA MER1_type -3 186 3 295 257 98 107 chr4 161817844 161818041 -40510306 + L2 LINE L2 2835 3029 -243 2236 132 0 0 chr4 161818041 161818352 -40509995 + AluSx SINE Alu 1 311 -1 295 257 98 107 chr4 161818352 161818500 -40509847 + L2 LINE L2 3029 3177 -95 2201 110 0 29 chr4 161818963 161819273 -40509074 - AluSx SINE Alu -11 301 1 333 329 234 18 chr4 161819854 161820140 -40508207 + L2 LINE L2 2915 3262 -10 4989 136 36 49 chr4 161820247 161821127 -40507220 + L1MA8 LINE L1 4415 5305 -918 554 234 8 65 chr4 161821127 161821251 -40507096 + FLAM_A SINE Alu 1 117 -16 2217 119 0 0 chr4 161821251 161821546 -40506801 - AluSx SINE Alu -17 295 1 4989 136 36 49 chr4 161821546 161821655 -40506692 + L1MA8 LINE L1 5304 5391 -832 1818 116 68 0 chr4 161821655 161821905 -40506442 + AluSc SINE Alu 24 290 -19 4989 136 36 49 chr4 161821905 161821994 -40506353 + L1MA8 LINE L1 5391 5480 -743 727 189 122 7 chr4 161821995 161822143 -40506204 + AluJb SINE Alu 118 282 -30 414 123 0 31 chr4 161822137 161822202 -40506145 + AluSc SINE Alu 232 294 -15 * 1080 112 12 0 chr4 161822202 161822363 -40505984 + L1MA8 LINE L1 5488 5650 -641 3243 85 70 63 chr4 161822377 161822920 -40505427 - LTR10A LTR ERV1 -62 547 1 2787 113 29 106 chr4 161822920 161823416 -40504931 + L1MA8 LINE L1 5647 6097 -194 1785 174 0 16 chr4 161823416 161823720 -40504627 + AluJo SINE Alu 1 299 -13 2787 113 29 106 chr4 161823720 161823782 -40504565 + L1MA8 LINE L1 6097 6162 -129 1504 186 15 72 chr4 161823943 161824277 -40504070 + MLT1B LTR MaLR 76 390 0 232 240 0 0 chr4 161824310 161824360 -40503987 - MIR SINE MIR -27 235 186 237 33 0 0 chr4 161824535 161824565 -40503782 + (ATG)n Simple_repeat Simple_repeat 3 32 0 528 281 66 27 chr4 161824583 161824821 -40503526 - MIR SINE MIR -5 257 14 332 316 76 58 chr4 161825046 161825217 -40503130 - MIR SINE MIR -81 181 8 498 249 23 64 chr4 161825414 161825587 -40502760 - MER103 DNA DNA 0 166 1 549 124 40 186 chr4 161828488 161828665 -40499682 - MER20 DNA MER1_type -28 191 41 674 160 0 16 chr4 161829798 161829923 -40498424 - Charlie1b DNA MER1_type -2 521 399 895 147 7 0 chr4 161829924 161830060 -40498287 + AluJo SINE Alu 1 137 -175 2043 198 20 2 chr4 161830075 161830480 -40497867 - Charlie1b DNA MER1_type -110 413 2 713 284 10 40 chr4 161830527 161830728 -40497619 + MIR SINE MIR 52 246 -16 207 0 0 0 chr4 161830746 161830769 -40497578 + (ATG)n Simple_repeat Simple_repeat 3 25 0 418 154 51 0 chr4 161830938 161831016 -40497331 - L1ME3A LINE L1 -5 6165 6084 207 270 48 0 chr4 161831096 161831159 -40497188 + L2 LINE L2 3248 3313 0 1871 162 3 10 chr4 161831586 161831883 -40496464 + AluJo SINE Alu 1 295 -17 3722 233 47 64 chr4 161833094 161834062 -40494285 + L1MB7 LINE L1 835 1818 -4826 2296 104 3 0 chr4 161834062 161834360 -40493987 - AluSx SINE Alu -13 299 1 3722 233 47 64 chr4 161834360 161835245 -40493102 + L1MB7 LINE L1 1818 2762 -3882 1751 169 3 23 chr4 161835245 161835553 -40492794 + AluJo SINE Alu 11 312 0 3722 233 47 64 chr4 161835553 161835699 -40492648 + L1MB7 LINE L1 2762 2909 -3735 4379 200 76 50 chr4 161835791 161836734 -40491613 + L1MB7 LINE L1 3752 4668 -2014 258 81 0 0 chr4 161836734 161836771 -40491576 + (CA)n Simple_repeat Simple_repeat 2 38 0 4379 200 76 50 chr4 161836771 161836892 -40491455 + L1MB7 LINE L1 4668 4784 -1898 649 148 93 0 chr4 161836892 161837000 -40491347 + FLAM_C SINE Alu 1 118 -25 4379 200 76 50 chr4 161837000 161838011 -40490336 + L1MB7 LINE L1 4784 5766 -916 2141 120 0 16 chr4 161838011 161838328 -40490019 + AluSx SINE Alu 1 312 0 2209 112 7 0 chr4 161838336 161838632 -40489715 + AluSx SINE Alu 1 298 -14 4379 200 76 50 chr4 161838632 161839148 -40489199 + L1MB7 LINE L1 5772 6273 -409 1590 171 29 7 chr4 161839148 161839422 -40488925 + AluJo SINE Alu 1 280 -32 195 42 0 0 chr4 161839424 161839448 -40488899 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 4379 200 76 50 chr4 161839448 161839528 -40488819 + L1MB7 LINE L1 6273 6679 -3 22 35 0 0 chr4 161839987 161840016 -40488331 + AT_rich Low_complexity Low_complexity 1 29 0 207 69 0 0 chr4 161840067 161840096 -40488251 + (TA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr4 161840099 161840122 -40488225 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr4 161840525 161840545 -40487802 + (TAA)n Simple_repeat Simple_repeat 1 20 0 400 318 135 0 chr4 161840546 161840738 -40487609 - MIR SINE MIR -8 254 37 201 286 66 44 chr4 161840743 161840834 -40487513 - MIR SINE MIR -100 108 16 22 0 0 0 chr4 161840840 161840862 -40487485 + AT_rich Low_complexity Low_complexity 1 22 0 475 220 131 18 chr4 161841181 161841349 -40486998 + MIR SINE MIR 56 242 -20 2261 99 7 0 chr4 161841863 161842157 -40486190 + AluSx SINE Alu 1 296 -16 1967 155 94 14 chr4 161843445 161843632 -40484715 - MLT1B LTR MaLR 0 390 219 2230 107 0 16 chr4 161843632 161843940 -40484407 - AluSx SINE Alu -9 303 1 1819 114 0 8 chr4 161843946 161844200 -40484147 - AluSc SINE Alu 0 309 58 1967 155 94 14 chr4 161844200 161844366 -40483981 - MLT1B LTR MaLR -175 215 1 1800 176 6 13 chr4 161844550 161844863 -40483484 + AluJb SINE Alu 1 311 -1 381 294 48 0 chr4 161844936 161845062 -40483285 - L1ME LINE L1 -359 5762 5631 2274 81 10 14 chr4 161845438 161845735 -40482612 - AluSq SINE Alu -17 296 1 1706 114 90 73 chr4 161846350 161846639 -40481708 + AluSx SINE Alu 1 294 -18 6471 136 80 32 chr4 161846938 161847211 -40481136 - Tigger3b DNA MER2_type -1797 1231 972 1988 115 0 7 chr4 161847211 161847490 -40480857 + AluSx SINE Alu 22 298 -14 6471 136 80 32 chr4 161847490 161847573 -40480774 - Tigger3b DNA MER2_type -2056 972 894 2067 109 0 17 chr4 161847573 161847875 -40480472 + AluSc SINE Alu 1 297 -12 6471 136 80 32 chr4 161847875 161848155 -40480192 - Tigger3b DNA MER2_type -2134 894 629 2141 104 10 13 chr4 161848155 161848454 -40479893 + AluSq SINE Alu 1 298 -15 1829 154 7 10 chr4 161848462 161848760 -40479587 + AluJb SINE Alu 7 303 -9 6471 136 80 32 chr4 161848760 161848969 -40479378 - Tigger3b DNA MER2_type -2405 623 425 221 0 0 33 chr4 161848969 161848999 -40479348 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2170 103 7 0 chr4 161849001 161849283 -40479064 - AluSx SINE Alu -28 284 1 6471 136 80 32 chr4 161849283 161849597 -40478750 - Tigger3b DNA MER2_type -2603 425 1 1373 238 54 0 chr4 161850331 161850680 -40477667 + MER63B DNA MER1_type 1 368 -68 767 169 0 61 chr4 161850793 161850826 -40477521 + FLAM_A SINE Alu 1 34 -277 2867 82 11 13 chr4 161850826 161851202 -40477145 - THE1C LTR MaLR 0 375 1 767 169 0 61 chr4 161851202 161851316 -40477031 + FLAM_A SINE Alu 34 139 -172 1805 155 7 3 chr4 161851829 161852120 -40476227 + AluJo SINE Alu 7 298 -14 2137 107 21 0 chr4 161852496 161852787 -40475560 + AluSx SINE Alu 1 297 -15 573 221 233 6 chr4 161852883 161853055 -40475292 + MER58C DNA MER1_type 5 215 0 470 323 44 22 chr4 161853055 161853281 -40475066 + Charlie8 DNA MER1_type 2 232 -2185 244 77 128 0 chr4 161853424 161853463 -40474884 + MER49 LTR ERV1 847 890 -33 475 301 47 55 chr4 161853474 161853966 -40474381 - L1M4 LINE L1 -1526 4620 4133 2198 102 0 0 chr4 161853993 161854276 -40474071 + AluSx SINE Alu 3 285 -27 228 35 0 0 chr4 161854277 161854306 -40474041 + (CA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr4 161854306 161854329 -40474018 + AT_rich Low_complexity Low_complexity 1 23 0 2328 93 0 3 chr4 161854410 161854710 -40473637 + AluSg SINE Alu 1 299 -11 786 229 38 0 chr4 161854812 161854969 -40473378 + FRAM SINE Alu 1 163 -3 319 228 56 93 chr4 161855010 161855094 -40473253 - L1MC4a LINE L1 -1949 5859 5782 2486 57 0 10 chr4 161855094 161855391 -40472956 + AluY SINE Alu 1 294 -17 319 228 56 93 chr4 161855391 161855468 -40472879 - L1MC4a LINE L1 -2026 5782 5704 420 147 27 0 chr4 161855477 161855552 -40472795 - AluJo SINE Alu -4 308 232 907 184 0 6 chr4 161855553 161855711 -40472636 - AluJo SINE Alu -155 157 1 808 113 9 0 chr4 161855891 161856006 -40472341 + AluSg/x SINE Alu 190 305 -7 1625 116 9 4 chr4 161856006 161856238 -40472109 + AluSc SINE Alu 71 303 -6 3240 158 22 6 chr4 161856241 161856787 -40471560 + L1MB7 LINE L1 5580 6134 -50 1881 139 23 16 chr4 161856790 161857093 -40471254 + AluJo SINE Alu 1 305 -7 712 198 0 9 chr4 161857125 161857242 -40471105 + FLAM_C SINE Alu 2 144 0 190 74 0 0 chr4 161857242 161857269 -40471078 + (CAAA)n Simple_repeat Simple_repeat 2 144 0 653 130 138 57 chr4 161857320 161857443 -40470904 - AluJo SINE Alu -178 134 2 375 333 37 32 chr4 161858520 161858709 -40469638 - L1MC4a LINE L1 -454 5667 5478 325 286 87 12 chr4 161858716 161858877 -40469470 - L1MC4a LINE L1 -725 5437 5265 2437 75 0 0 chr4 161858888 161859183 -40469164 + AluY SINE Alu 1 295 -16 1606 167 31 17 chr4 161859193 161859487 -40468860 + AluJo SINE Alu 1 298 -14 605 224 0 0 chr4 161859798 161859905 -40468442 - AluJb SINE Alu -30 282 176 2270 128 0 0 chr4 161859912 161860210 -40468137 - AluSx SINE Alu -14 298 1 313 125 0 0 chr4 161860215 161860263 -40468084 - FLAM SINE Alu -1 132 85 198 343 49 20 chr4 161860683 161860785 -40467562 + L2 LINE L2 2557 2661 -653 1858 163 6 10 chr4 161861041 161861354 -40466993 - AluJo SINE Alu 0 312 1 1928 146 3 29 chr4 161861457 161861772 -40466575 + AluJb SINE Alu 1 307 -5 227 271 35 35 chr4 161862207 161862292 -40466055 + MIR SINE MIR 99 183 -79 747 303 113 41 chr4 161862313 161862756 -40465591 - L2 LINE L2 -4 3309 2835 674 298 24 0 chr4 161862947 161863155 -40465192 - MIR SINE MIR -48 214 2 418 228 7 36 chr4 161864219 161864368 -40463979 + MER5A DNA MER1_type 4 189 0 503 263 29 72 chr4 161864633 161864842 -40463505 - MIR SINE MIR -59 203 4 222 273 23 34 chr4 161864883 161864971 -40463376 - MIR3 SINE MIR -48 160 74 759 266 177 54 chr4 161864992 161865564 -40462783 + L2 LINE L2 1875 2516 -798 196 284 53 110 chr4 161865608 161865890 -40462457 + L2 LINE L2 2639 2904 -410 356 335 68 90 chr4 161865940 161866218 -40462129 + L2 LINE L2 2920 3191 -81 2481 40 0 56 chr4 161866278 161866600 -40461747 + AluY SINE Alu 1 304 -7 2242 79 4 0 chr4 161866736 161867041 -40461306 + AluSc SINE Alu 3 308 0 1621 176 60 0 chr4 161867100 161867409 -40460938 + AluJb SINE Alu 1 325 0 2424 88 0 7 chr4 161867423 161867731 -40460616 + AluY SINE Alu 1 306 -5 24 0 0 0 chr4 161868834 161868858 -40459489 + AT_rich Low_complexity Low_complexity 1 24 0 2117 103 0 3 chr4 161869643 161869963 -40458384 + AluY SINE Alu 1 319 0 753 255 89 82 chr4 161870279 161870817 -40457530 + MER34 LTR ERV1 1 542 0 374 133 10 41 chr4 161871317 161871333 -40457014 + GA-rich Low_complexity Low_complexity 2 17 -79 3768 158 15 67 chr4 161871333 161872061 -40456286 + LTR8 LTR ERV1 1 690 -1 374 133 10 41 chr4 161872061 161872142 -40456205 + GA-rich Low_complexity Low_complexity 17 96 0 2316 52 4 0 chr4 161872215 161872486 -40455861 - AluY SINE Alu -24 287 16 752 102 0 0 chr4 161872861 161872959 -40455388 + HY3 scRNA scRNA 1 98 -3 1610 162 3 76 chr4 161873087 161873231 -40455116 + AluJb SINE Alu 1 109 -203 2410 88 0 0 chr4 161873231 161873527 -40454820 + AluSc SINE Alu 1 296 -13 1610 162 3 76 chr4 161873527 161873710 -40454637 + AluJb SINE Alu 109 304 -8 217 318 57 34 chr4 161873957 161874045 -40454302 - MIR SINE MIR -81 127 38 529 140 140 0 chr4 161874116 161874209 -40454138 + U6 snRNA snRNA 1 106 -1 2220 112 3 10 chr4 161874229 161874542 -40453805 + AluY SINE Alu 1 311 0 1467 185 80 46 chr4 161875853 161876204 -40452143 + MLT1A2 LTR MaLR 1 363 -11 587 210 84 42 chr4 161876208 161876375 -40451972 + L2 LINE L2 3139 3312 -1 1870 158 7 0 chr4 161876526 161876823 -40451524 - AluJb SINE Alu -13 299 1 1480 159 99 148 chr4 161876938 161877302 -40451045 + LTR8 LTR ERV1 1 317 -374 24 53 0 0 chr4 161877317 161877355 -40450992 + AT_rich Low_complexity Low_complexity 1 38 0 1236 210 36 36 chr4 161877371 161877676 -40450671 + LTR8 LTR ERV1 310 614 -77 1850 169 28 19 chr4 161977695 161978057 -40350290 - MLT1A1 LTR MaLR 0 365 1 1276 238 123 37 chr4 161979069 161979531 -40348816 + MLT1D LTR MaLR 1 502 -3 22 35 0 0 chr4 161979596 161979625 -40348722 + AT_rich Low_complexity Low_complexity 1 29 0 230 295 51 0 chr4 161979933 161980051 -40348296 - MIR SINE MIR -32 230 105 421 251 18 39 chr4 161980347 161980507 -40347840 + L1ME4a LINE L1 5556 5669 -452 303 275 47 41 chr4 161980906 161981077 -40347270 + L1ME4a LINE L1 5733 5904 -217 451 305 124 5 chr4 161981564 161981774 -40346573 + MIR SINE MIR 28 262 0 1625 153 24 21 chr4 161982682 161982970 -40345377 - AluJo SINE Alu -23 289 1 234 0 0 0 chr4 161983096 161983122 -40345225 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2397 81 0 3 chr4 161984349 161984645 -40343702 + AluSc SINE Alu 1 295 -14 395 248 109 0 chr4 161984746 161984847 -40343500 + MER2 DNA MER2_type 229 340 -5 347 127 0 0 chr4 161984850 161984907 -40343440 + MLT2C1 LTR ERVL 349 397 0 2155 128 7 0 chr4 161985022 161985326 -40343021 + AluJb SINE Alu 5 310 -2 601 257 162 30 chr4 161985840 161985987 -40342360 - L1ME4a LINE L1 -1 6120 5994 1968 183 29 10 chr4 161985987 161986370 -40341977 - MLT1B LTR MaLR 0 390 1 601 257 162 30 chr4 161986370 161986697 -40341650 - L1ME4a LINE L1 -127 5994 5583 2155 162 0 73 chr4 161986802 161987203 -40341144 + MER57A LTR ERV1 8 378 -25 2533 128 45 33 chr4 161987203 161987579 -40340768 + MSTA LTR MaLR 1 384 -44 2355 105 3 6 chr4 161987579 161987892 -40340455 - AluSx SINE Alu 0 312 1 2533 128 45 33 chr4 161987892 161987938 -40340409 + MSTA LTR MaLR 384 428 0 2155 162 0 73 chr4 161987938 161987963 -40340384 + MER57A LTR ERV1 378 403 0 393 22 0 0 chr4 161990936 161990982 -40337365 + (TG)n Simple_repeat Simple_repeat 2 47 0 300 27 0 0 chr4 161991761 161991798 -40336549 + (T)n Simple_repeat Simple_repeat 1 37 0 465 140 243 9 chr4 161994109 161994216 -40334131 + FLAM_C SINE Alu 2 133 0 223 388 33 7 chr4 161994871 161995023 -40333324 + L3 LINE CR1 1065 1220 -357 230 0 33 0 chr4 161995318 161995348 -40332999 + (CAT)n Simple_repeat Simple_repeat 2 32 0 2227 96 3 0 chr4 161995352 161995660 -40332687 - AluSx SINE Alu 0 309 1 211 182 0 0 chr4 161995927 161995960 -40332387 + polypyrimidine Low_complexity Low_complexity 3 35 0 2761 177 34 29 chr4 161995986 161996165 -40332182 + L1MD1 LINE L1 5313 5490 -752 1772 191 0 9 chr4 161996165 161996480 -40331867 + AluSx SINE Alu 1 312 0 2761 177 34 29 chr4 161996480 161996883 -40331464 + L1MD1 LINE L1 5490 5898 -344 1199 152 24 0 chr4 161996985 161997195 -40331152 - AluJo SINE Alu -14 298 84 260 253 81 10 chr4 161997197 161997296 -40331051 - L1 LINE L1 -1317 4829 4724 2875 249 71 36 chr4 161997395 161997613 -40330734 - L1ME3A LINE L1 -29 6141 5932 3960 133 42 57 chr4 161997613 161998194 -40330153 - L1MB3 LINE L1 0 6183 5614 2282 111 73 14 chr4 161998194 161998538 -40329809 - THE1B LTR MaLR 0 364 1 3960 133 42 57 chr4 161998538 161998732 -40329615 - L1MB3 LINE L1 -569 5614 5419 2875 249 71 36 chr4 161998732 162000653 -40327694 - L1ME3A LINE L1 -238 5932 3904 2319 122 40 6 chr4 162000653 162001005 -40327342 - THE1B LTR MaLR 0 364 1 2875 249 71 36 chr4 162001005 162001049 -40327298 - L1ME3A LINE L1 -2266 3904 3863 436 332 54 23 chr4 162001050 162001436 -40326911 + L2 LINE L2 2127 2524 -790 804 145 80 0 chr4 162001671 162001809 -40326538 - L1M3 LINE L1 -386 5797 5649 2270 109 7 0 chr4 162002523 162002826 -40325521 + AluSx SINE Alu 1 305 -7 225 0 0 0 chr4 162003397 162003422 -40324925 + (GA)n Simple_repeat Simple_repeat 2 26 0 1644 102 42 49 chr4 162003887 162004038 -40324309 + L1MB3 LINE L1 5855 6005 -178 2063 128 3 10 chr4 162004038 162004342 -40324005 - AluSx SINE Alu -10 302 1 1644 102 42 49 chr4 162004342 162004475 -40323872 + L1MB3 LINE L1 6005 6137 -46 1332 141 0 5 chr4 162004478 162004711 -40323636 + AluJo SINE Alu 87 318 0 307 0 0 0 chr4 162004677 162004770 -40323577 + (TAA)n Simple_repeat Simple_repeat 1 93 0 * 1826 179 0 13 chr4 162004780 162005088 -40323259 + AluJo SINE Alu 1 304 -8 183 313 0 38 chr4 162006487 162006567 -40321780 + MIR SINE MIR 89 165 -97 261 249 49 12 chr4 162007553 162007617 -40320730 - HsTC2 DNA Tc2 -84 1814 1754 207 0 0 0 chr4 162007617 162007640 -40320707 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 261 249 49 12 chr4 162007640 162007666 -40320681 - HsTC2 DNA Tc2 -144 1754 3 1293 197 80 21 chr4 162008026 162008351 -40319996 - MER2 DNA MER2_type 0 344 1 400 179 13 26 chr4 162008357 162008435 -40319912 - Tigger5 DNA MER2_type 0 2323 2247 1596 128 0 9 chr4 162008436 162008662 -40319685 + AluSx SINE Alu 1 224 -88 194 333 19 0 chr4 162009032 162009086 -40319261 + L2 LINE L2 3187 3241 -31 342 296 0 0 chr4 162009087 162009158 -40319189 + L2 LINE L2 3200 3270 -2 2182 93 17 0 chr4 162009537 162009828 -40318519 + AluSx SINE Alu 1 296 -16 480 18 0 0 chr4 162010558 162010615 -40317732 + (CA)n Simple_repeat Simple_repeat 2 58 0 3534 152 35 40 chr4 162010859 162010998 -40317349 + L1MB7 LINE L1 5314 5452 -732 2029 92 0 21 chr4 162010998 162011321 -40317026 + AluSc SINE Alu 1 317 0 3534 152 35 40 chr4 162011321 162011564 -40316783 + L1MB7 LINE L1 5452 5695 -489 1689 172 3 7 chr4 162011564 162011867 -40316480 + AluJb SINE Alu 1 302 -10 3534 152 35 40 chr4 162011867 162012190 -40316157 + L1MB7 LINE L1 5695 6020 -164 432 177 0 31 chr4 162012282 162012378 -40315969 - L1MB8 LINE L1 -5 6173 6081 462 165 6 148 chr4 162012378 162012554 -40315793 + L1MC5 LINE L1 6852 7002 -959 1484 258 138 10 chr4 162012561 162012956 -40315391 - MLT1G LTR MaLR -8 582 104 2153 113 0 0 chr4 162012956 162013248 -40315099 - AluSx SINE Alu -19 293 2 1484 258 138 10 chr4 162013248 162013367 -40314980 - MLT1G LTR MaLR -486 104 2 471 230 103 44 chr4 162013367 162013571 -40314776 + L1MC5 LINE L1 6996 7211 -750 585 221 81 74 chr4 162013572 162013843 -40314504 + L1MC5 LINE L1 7255 7527 -434 1992 149 0 0 chr4 162015366 162015675 -40312672 + AluSx SINE Alu 1 309 -3 622 292 90 9 chr4 162015741 162015969 -40312378 + MIR SINE MIR 6 249 -13 1871 104 54 4 chr4 162016460 162016739 -40311608 - AluSx SINE Alu -19 293 1 190 242 0 48 chr4 162017230 162017292 -40311055 + MIR SINE MIR 161 219 -43 208 167 28 0 chr4 162018198 162018234 -40310113 - L2 LINE L2 -15 3257 3221 353 264 63 72 chr4 162018305 162018503 -40309844 - MIR SINE MIR -55 207 3 258 250 57 0 chr4 162020440 162020528 -40307819 - L1ME4a LINE L1 -16 6105 6013 709 171 0 0 chr4 162020540 162020651 -40307696 - FLAM_C SINE Alu -21 122 12 801 263 139 57 chr4 162021348 162021824 -40306523 + MLT1G1 LTR MaLR 81 595 0 320 229 309 17 chr4 162021988 162022163 -40306184 - MIR SINE MIR -34 228 3 1221 194 73 52 chr4 162022530 162022703 -40305644 + MER58B DNA MER1_type 1 169 -2251 1782 160 139 16 chr4 162022703 162023084 -40305263 + MSTA LTR MaLR 1 428 0 8858 155 57 31 chr4 162023084 162024693 -40303654 + MSTA-int LTR MaLR 1 1651 0 2253 141 88 8 chr4 162024693 162025089 -40303258 + MSTA LTR MaLR 1 428 0 1221 194 73 52 chr4 162025089 162025242 -40303105 + MER58B DNA MER1_type 168 336 -5 255 330 72 0 chr4 162025383 162025499 -40302848 + MIR SINE MIR 31 155 -65 204 135 0 0 chr4 162025905 162025942 -40302405 + (A)n Simple_repeat Simple_repeat 1 37 0 224 219 125 42 chr4 162026584 162026680 -40301667 + MIR SINE MIR 130 233 -29 1763 176 3 10 chr4 162026721 162027033 -40301314 - AluJo SINE Alu -2 310 1 216 200 0 0 chr4 162027319 162027359 -40300988 - MIR SINE MIR -72 136 97 1009 253 32 84 chr4 162027697 162028076 -40300271 + MLT1J LTR MaLR 101 459 -52 254 234 0 62 chr4 162028190 162028254 -40300093 + L2 LINE L2 3014 3073 -240 413 101 56 11 chr4 162028341 162028430 -40299917 + CT-rich Low_complexity Low_complexity 2 94 0 412 270 66 15 chr4 162028433 162028570 -40299777 + L2 LINE L2 3168 3311 -2 1886 122 99 32 chr4 162029200 162029545 -40298802 - THE1C LTR MaLR 0 375 8 316 242 99 22 chr4 162029653 162029744 -40298603 - L2 LINE L2 -1 3271 3174 1681 221 23 50 chr4 162031569 162032049 -40296298 + MLT1C LTR MaLR 1 467 0 1598 226 50 35 chr4 162032240 162032422 -40295925 - L1ME2 LINE L1 -151 6013 5835 2038 126 0 7 chr4 162032422 162032724 -40295623 - AluSx SINE Alu -12 300 1 1598 226 50 35 chr4 162032724 162032996 -40295351 - L1ME2 LINE L1 -329 5835 5552 258 229 0 0 chr4 162033002 162033050 -40295297 + L1ME LINE L1 5551 5598 -566 256 357 10 0 chr4 162033142 162033240 -40295107 - L1ME2 LINE L1 -629 5537 5439 263 238 36 36 chr4 162034348 162034432 -40293915 - MIR SINE MIR -126 136 53 1766 162 46 21 chr4 162034635 162035033 -40293314 - MLT1C LTR MaLR 0 390 1 1830 155 0 10 chr4 162036354 162036657 -40291690 - AluJo SINE Alu -12 300 1 874 238 42 5 chr4 162036736 162036950 -40291397 - L1ME2 LINE L1 -95 6069 5848 189 335 245 15 chr4 162037026 162037226 -40291121 + MIR SINE MIR 3 248 -14 313 227 0 0 chr4 162037673 162037739 -40290608 - L2 LINE L2 -65 3207 3142 225 234 0 0 chr4 162038548 162038595 -40289752 - MER81 DNA DNA -20 94 48 235 246 31 46 chr4 162038947 162039012 -40289335 - MIR SINE MIR -184 78 15 221 233 116 23 chr4 162039144 162039230 -40289117 + MER5A DNA MER1_type 80 173 -16 613 226 0 8 chr4 162039764 162039888 -40288459 + MER69A DNA AcHobo 49 171 -6 2078 105 0 0 chr4 162041561 162041855 -40286492 + AluSx SINE Alu 16 309 -3 1640 166 58 0 chr4 162043878 162044156 -40284191 + AluJb SINE Alu 1 294 -18 22 0 0 0 chr4 162044750 162044772 -40283575 + AT_rich Low_complexity Low_complexity 1 22 0 699 190 8 0 chr4 162044932 162045053 -40283294 - FRAM SINE Alu -54 122 1 2636 200 35 0 chr4 162045085 162045599 -40282748 + L1MDa LINE L1 16 547 -5993 782 165 15 12 chr4 162045616 162046097 -40282250 + (CA)n Simple_repeat Simple_repeat 1 482 0 2473 156 21 14 chr4 162046097 162046519 -40281828 - MSTB LTR MaLR -1 425 1 8500 170 68 10 chr4 162046519 162048079 -40280268 - MSTB-int LTR MaLR 0 1651 1 2332 160 47 5 chr4 162048080 162048486 -40279861 - MSTB LTR MaLR -1 425 3 284 48 24 0 chr4 162048486 162048528 -40279819 + (CA)n Simple_repeat Simple_repeat 1 43 0 3820 201 132 30 chr4 162048528 162049597 -40278750 + L1MDa LINE L1 591 1768 -4772 2600 162 21 44 chr4 162049597 162050116 -40278231 + L1MD1 LINE L1 5736 6242 0 1993 142 16 148 chr4 162050116 162050189 -40278158 - Charlie1 DNA MER1_type -50 2711 2630 2174 105 0 0 chr4 162050189 162050485 -40277862 + AluSq SINE Alu 1 296 -17 1993 142 16 148 chr4 162050485 162050513 -40277834 - Charlie1 DNA MER1_type -131 2630 2600 1524 168 31 10 chr4 162050513 162050634 -40277713 + AluJb SINE Alu 13 130 -182 2415 57 10 0 chr4 162050634 162050934 -40277413 + AluY SINE Alu 1 303 -8 1524 168 31 10 chr4 162050934 162051103 -40277244 + AluJb SINE Alu 130 309 -3 1993 142 16 148 chr4 162051103 162051498 -40276849 - Charlie1 DNA MER1_type -161 2600 2309 1614 105 78 4 chr4 162051498 162051755 -40276592 + AluSc SINE Alu 18 293 -16 1993 142 16 148 chr4 162051755 162051876 -40276471 - Charlie1 DNA MER1_type -452 2309 2174 233 352 112 0 chr4 162052760 162052885 -40275462 + L2 LINE L2 3126 3264 -8 312 252 78 0 chr4 162053726 162053829 -40274518 - MIR SINE MIR -10 252 142 328 290 25 86 chr4 162054316 162054561 -40273786 + Charlie8 DNA MER1_type 1 230 -2187 795 355 65 35 chr4 162054728 162055357 -40272990 - L2 LINE L2 -470 2844 2197 784 178 0 0 chr4 162055378 162055507 -40272840 - FLAM_C SINE Alu 0 133 5 304 286 104 71 chr4 162055797 162055979 -40272368 - L1ME3A LINE L1 -20 6150 5963 389 244 105 71 chr4 162056027 162056322 -40272025 - L1ME3A LINE L1 -217 5947 5643 844 150 0 0 chr4 162056458 162056585 -40271762 - FLAM_C SINE Alu -16 127 1 1979 121 10 0 chr4 162056670 162056960 -40271387 + AluSg SINE Alu 1 293 -17 976 192 0 22 chr4 162057944 162058126 -40270221 - MER5B DNA MER1_type 0 178 1 345 315 75 7 chr4 162058255 162058401 -40269946 - MIR SINE MIR -106 156 1 472 280 50 44 chr4 162059498 162059680 -40268667 + MIR SINE MIR 67 249 -13 820 216 53 0 chr4 162061084 162061255 -40267092 + MER63A DNA MER1_type 13 192 -18 1964 135 0 7 chr4 162061924 162062221 -40266126 - AluSx SINE Alu -17 295 1 1690 171 7 0 chr4 162062297 162062577 -40265770 + AluJo SINE Alu 1 282 -30 25 0 0 0 chr4 162062577 162062602 -40265745 + AT_rich Low_complexity Low_complexity 1 25 0 1966 136 0 3 chr4 162062603 162062898 -40265449 + AluSx SINE Alu 1 294 -18 1966 115 0 13 chr4 162063784 162064089 -40264258 - AluSx SINE Alu -11 301 1 1987 116 20 0 chr4 162065125 162065417 -40262930 - AluY SINE Alu -8 303 6 1366 179 51 15 chr4 162066547 162066821 -40261526 + AluJo SINE Alu 1 284 -28 304 311 67 30 chr4 162067138 162067302 -40261045 + MER5B DNA MER1_type 1 170 -8 231 204 0 0 chr4 162069945 162069994 -40258353 + (CA)n Simple_repeat Simple_repeat 2 50 0 1467 178 91 0 chr4 162072570 162072846 -40255501 + AluJo SINE Alu 1 301 -11 1773 140 0 37 chr4 162072912 162073212 -40255135 - AluJb SINE Alu -23 289 1 321 181 88 110 chr4 162074547 162074729 -40253618 + MIR3 SINE MIR 9 186 -22 1446 223 16 19 chr4 162077192 162077511 -40250836 - MSTD LTR MaLR -75 321 4 2333 78 0 0 chr4 162078482 162078776 -40249571 - AluY SINE Alu -17 294 1 206 146 49 0 chr4 162079054 162079095 -40249252 - MER91 DNA MER1_type -32 108 66 1609 152 119 0 chr4 162079127 162079421 -40248926 + MER7A DNA MER2_type 1 326 -20 193 299 15 15 chr4 162079483 162079550 -40248797 + MER5C DNA MER1_type 1 67 -257 6163 162 19 14 chr4 162080169 162081213 -40247134 + L1MC1 LINE L1 5188 6242 -91 189 0 0 0 chr4 162081213 162081234 -40247113 + (TG)n Simple_repeat Simple_repeat 2 22 0 6163 162 19 14 chr4 162081234 162081327 -40247020 + L1MC1 LINE L1 6242 6333 0 241 224 41 0 chr4 162082029 162082078 -40246269 + MIR SINE MIR 53 103 -105 545 213 58 45 chr4 162082260 162082415 -40245932 + MIR SINE MIR 64 220 -42 2686 224 40 52 chr4 162083260 162083549 -40244798 - L1ME3 LINE L1 -1 6161 5870 2354 83 0 10 chr4 162083549 162083863 -40244484 - AluSq SINE Alu -2 311 1 2686 224 40 52 chr4 162083863 162084400 -40243947 - L1ME3 LINE L1 -292 5870 5345 992 136 0 0 chr4 162084403 162084550 -40243797 + MSTB2 LTR MaLR 1 147 -310 5540 119 24 9 chr4 162084551 162085410 -40242937 - L1PA16 LINE L1 0 6166 5295 403 123 15 0 chr4 162085416 162085481 -40242866 + AluSp/q SINE Alu 239 304 -9 546 255 13 0 chr4 162085483 162085636 -40242711 - L1ME3 LINE L1 -1088 5058 4904 1639 220 56 2 chr4 162085645 162086041 -40242306 - L1P LINE L1 -848 5298 4882 376 161 0 0 chr4 162086041 162086103 -40242244 + MSTB1 LTR MaLR 369 430 -2 1425 264 47 28 chr4 162086109 162086394 -40241953 - L1M4 LINE L1 -804 5342 5064 1735 168 20 3 chr4 162086394 162086692 -40241655 + AluJo SINE Alu 1 303 -9 1425 264 47 28 chr4 162086692 162086982 -40241365 - L1M4 LINE L1 -1082 5064 4756 294 239 46 0 chr4 162087032 162087141 -40241206 - MER69 DNA AcHobo -188 2338 2225 1932 149 0 0 chr4 162087167 162087456 -40240891 - AluSx SINE Alu -9 303 15 1031 225 160 62 chr4 162087472 162087661 -40240686 - L1ME3A LINE L1 -6 6164 5995 2080 100 0 0 chr4 162087661 162087940 -40240407 - AluSx SINE Alu -31 281 3 1031 225 160 62 chr4 162087940 162088119 -40240228 - L1ME3A LINE L1 -175 5995 5760 2782 104 3 3 chr4 162088119 162088493 -40239854 - THE1C LTR MaLR 0 375 2 883 250 45 8 chr4 162088601 162088845 -40239502 - L1ME3A LINE L1 -616 5550 5298 233 310 35 35 chr4 162088942 162089029 -40239318 + MER5B DNA MER1_type 26 112 -66 601 193 68 65 chr4 162089051 162089266 -40239081 - L1MD3 LINE L1 0 8026 7848 200 86 29 0 chr4 162089597 162089632 -40238715 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 222 62 0 0 chr4 162089930 162089962 -40238385 + (T)n Simple_repeat Simple_repeat 1 32 0 267 241 24 24 chr4 162090011 162090094 -40238253 - L1M1 LINE L1 -4613 2952 2870 534 290 125 51 chr4 162090109 162090677 -40237670 - L1MEd LINE L1 -4730 1399 833 355 324 125 33 chr4 162090687 162091175 -40237172 - L1MEd LINE L1 -5351 768 236 210 279 16 33 chr4 162092102 162092224 -40236123 + GA-rich Low_complexity Low_complexity 3 122 0 220 325 106 33 chr4 162093438 162093589 -40234758 + L2 LINE L2 3107 3268 -4 1246 166 0 0 chr4 162093616 162093815 -40234532 + AluJo SINE Alu 37 235 -77 207 0 0 0 chr4 162094232 162094255 -40234092 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 756 143 0 0 chr4 162094427 162094553 -40233794 + (TTTC)n Simple_repeat Simple_repeat 2 127 0 707 199 15 0 chr4 162094560 162094691 -40233656 - FLAM_A SINE Alu 0 133 1 554 181 80 29 chr4 162095120 162095250 -40233097 + MER53 DNA DNA 1 140 -49 1835 164 0 3 chr4 162095250 162095543 -40232804 + AluJb SINE Alu 1 292 -20 266 193 0 53 chr4 162095555 162095612 -40232735 + L1MB2 LINE L1 6079 6132 -39 374 169 14 0 chr4 162095632 162095703 -40232644 - MER53 DNA DNA -117 72 1 712 199 0 22 chr4 162096768 162096904 -40231443 + FLAM_C SINE Alu 1 133 0 530 145 21 23 chr4 162096967 162097073 -40231274 + MLT1C LTR MaLR 2 105 -285 6174 75 14 5 chr4 162097073 162097907 -40230440 + L1PA11 LINE L1 5333 6174 0 230 162 0 0 chr4 162098122 162098159 -40230188 - MLT2B2 LTR ERVL -2 513 477 261 83 0 0 chr4 162098160 162098196 -40230151 + (TA)n Simple_repeat Simple_repeat 2 37 0 25 51 0 0 chr4 162098620 162098659 -40229688 + AT_rich Low_complexity Low_complexity 1 39 0 1772 214 32 11 chr4 162098736 162099115 -40229232 + MLT1C LTR MaLR 81 467 0 402 281 67 7 chr4 162099140 162099275 -40229072 - MIR SINE MIR -32 230 88 1635 178 0 10 chr4 162099493 162099796 -40228551 + AluJo SINE Alu 10 309 -3 242 207 17 17 chr4 162099929 162099987 -40228360 - MLT1I LTR MaLR -1 408 351 306 298 35 18 chr4 162100467 162100581 -40227766 + L1M2 LINE L1 2752 2867 -3982 1492 208 76 3 chr4 162102305 162102646 -40225701 + MLT2D LTR ERVL 1 366 -48 231 196 0 0 chr4 162102659 162102705 -40225642 + (CA)n Simple_repeat Simple_repeat 1 46 0 2081 100 0 27 chr4 162102841 162103142 -40225205 + AluSx SINE Alu 1 293 -19 296 283 212 0 chr4 162104436 162104549 -40223798 + MIR SINE MIR 61 197 -65 199 271 0 0 chr4 162104753 162104801 -40223546 + MIR SINE MIR 80 127 -135 274 264 85 0 chr4 162105385 162105491 -40222856 + MIR3 SINE MIR 87 201 -7 381 304 202 0 chr4 162105680 162105848 -40222499 + MIR SINE MIR 12 213 -49 255 333 83 8 chr4 162105958 162106090 -40222257 - MARNA DNA Mariner -302 284 143 219 235 49 128 chr4 162106317 162106419 -40221928 + MIR SINE MIR 29 122 -86 496 193 101 97 chr4 162106971 162107199 -40221148 + L1ME3A LINE L1 5942 6170 0 402 278 53 41 chr4 162107854 162108023 -40220324 + MIR3 SINE MIR 6 176 -32 189 74 0 0 chr4 162108300 162108327 -40220020 + (TG)n Simple_repeat Simple_repeat 2 28 0 335 248 60 67 chr4 162108367 162108516 -40219831 - L1ME3A LINE L1 -221 5949 5802 2252 75 0 7 chr4 162108518 162108812 -40219535 - AluY SINE Alu -19 292 1 2071 114 7 3 chr4 162108816 162109115 -40219232 - AluSx SINE Alu -12 300 1 225 314 23 0 chr4 162109144 162109230 -40219117 - L1M2 LINE L1 -515 5782 5695 397 304 30 30 chr4 162109540 162109675 -40218672 + L2 LINE L2 3118 3252 -20 277 235 147 0 chr4 162109740 162109842 -40218505 - MER96 DNA MER1_type? -8 167 51 2293 125 0 0 chr4 162109891 162110196 -40218151 - AluSx SINE Alu -7 305 1 255 233 0 0 chr4 162112227 162112287 -40216060 + CT-rich Low_complexity Low_complexity 3 62 0 1839 165 3 3 chr4 162112788 162113079 -40215268 - AluJb SINE Alu -17 295 5 334 309 29 48 chr4 162113665 162113875 -40214472 - L2 LINE L2 -6 3307 3102 307 272 61 18 chr4 162113899 162114013 -40214334 + MIR3 SINE MIR 37 155 -53 219 239 0 0 chr4 162115217 162115263 -40213084 - L2 LINE L2 -23 3249 3204 1166 167 16 66 chr4 162115647 162115844 -40212503 + L1MB3 LINE L1 5938 6121 -62 2187 123 0 0 chr4 162115844 162116137 -40212210 + AluSx SINE Alu 1 293 -19 1166 167 16 66 chr4 162116137 162116196 -40212151 + L1MB3 LINE L1 6121 6181 -2 198 0 0 0 chr4 162117182 162117204 -40211143 + (TTG)n Simple_repeat Simple_repeat 3 24 0 22 0 0 0 chr4 162117242 162117264 -40211083 + AT_rich Low_complexity Low_complexity 1 22 0 183 146 0 0 chr4 162118415 162118456 -40209891 + (GGA)n Simple_repeat Simple_repeat 1 41 0 382 356 17 22 chr4 162119247 162119427 -40208920 + MIR3 SINE MIR 18 196 -12 465 317 77 19 chr4 162119957 162120165 -40208182 + MIR SINE MIR 19 238 -24 548 112 0 0 chr4 162120499 162120583 -40207764 - L1MB4 LINE L1 -37 6143 6060 1015 64 16 0 chr4 162122167 162122292 -40206055 + AluSc SINE Alu 1 127 -182 291 141 0 0 chr4 162122292 162122356 -40205991 + (CA)n Simple_repeat Simple_repeat 1 64 0 1202 103 11 0 chr4 162122357 162122531 -40205816 + AluSc SINE Alu 133 308 -1 21 82 0 0 chr4 162123941 162123990 -40204357 + GC_rich Low_complexity Low_complexity 1 49 0 22 103 0 0 chr4 162125145 162125223 -40203124 + GC_rich Low_complexity Low_complexity 1 78 0 195 204 0 0 chr4 162125729 162125778 -40202569 + (CA)n Simple_repeat Simple_repeat 1 49 0 336 147 44 29 chr4 162126480 162126548 -40201799 + MER103 DNA DNA 95 163 -3 1245 124 99 15 chr4 162126682 162126884 -40201463 + MER20 DNA MER1_type 1 219 0 202 246 70 0 chr4 162127468 162127525 -40200822 + MIR SINE MIR 140 200 -62 205 304 0 63 chr4 162128013 162128092 -40200255 + L2 LINE L2 3126 3199 -73 833 303 38 19 chr4 162128783 162129156 -40199191 - L1MC4 LINE L1 -111 7931 7552 * 1483 192 69 6 chr4 162129142 162129207 -40199140 + L1 LINE L1 4206 4265 -1881 288 0 0 0 chr4 162129207 162129239 -40199108 + (CA)n Simple_repeat Simple_repeat 1 32 0 1483 192 69 6 chr4 162129239 162129570 -40198777 + L1 LINE L1 4265 4605 -1541 496 192 60 148 chr4 162129633 162129713 -40198634 - L1MC4 LINE L1 -890 7152 7067 1982 141 73 6 chr4 162129713 162130053 -40198294 + MER47A DNA MER2_type 3 365 -1 496 192 60 148 chr4 162130053 162130290 -40198057 - L1MC4 LINE L1 -975 7067 6863 876 280 151 62 chr4 162130551 162131080 -40197267 - MLT1K LTR MaLR 0 588 13 180 111 0 0 chr4 162131692 162131719 -40196628 + (TCTCCC)n Simple_repeat Simple_repeat 5 31 0 956 221 90 52 chr4 162132788 162133155 -40195192 - MLT1B LTR MaLR -9 381 1 207 0 0 0 chr4 162133506 162133529 -40194818 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 695 271 49 9 chr4 162136957 162137182 -40191165 + MIR SINE MIR 4 237 -25 429 285 36 30 chr4 162137772 162137937 -40190410 - LTR33 LTR ERVL -306 215 50 405 0 0 0 chr4 162138120 162138165 -40190182 + (TCTCC)n Simple_repeat Simple_repeat 1 45 0 306 323 137 69 chr4 162138485 162138835 -40189512 - L2 LINE L2 0 3272 2899 367 338 110 17 chr4 162139933 162140170 -40188177 + L2 LINE L2 477 735 -2579 1116 230 109 44 chr4 162140171 162140601 -40187746 - MLT1C LTR MaLR -1 466 9 1337 284 141 90 chr4 162140613 162142238 -40186109 + L2 LINE L2 759 2466 -848 364 267 17 17 chr4 162142458 162142574 -40185773 - LTR67 LTR ERVL -4 553 438 186 43 0 0 chr4 162143517 162143540 -40184807 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 204 250 23 0 chr4 162143600 162143644 -40184703 + MER5A DNA MER1_type 6 50 -139 225 241 17 0 chr4 162143683 162143741 -40184606 + (CACCC)n Simple_repeat Simple_repeat 1 59 0 1923 174 0 0 chr4 162143967 162144266 -40184081 - AluJb SINE Alu -13 299 1 188 264 19 19 chr4 162144266 162144319 -40184028 - L2 LINE L2 -5 3308 3256 816 27 27 0 chr4 162144355 162144466 -40183881 + (TAGA)n Simple_repeat Simple_repeat 1 114 0 218 215 0 15 chr4 162144608 162144673 -40183674 + A-rich Low_complexity Low_complexity 2 65 0 593 249 38 33 chr4 162144950 162145290 -40183057 - L1ME LINE L1 -312 5858 5382 1609 199 3 25 chr4 162145290 162145413 -40182934 - AluJb SINE Alu -1 311 187 4332 76 7 2 chr4 162145413 162145963 -40182384 + MER41A LTR ERV1 1 553 -1 1609 199 3 25 chr4 162145963 162146156 -40182191 - AluJb SINE Alu -125 187 2 285 252 36 27 chr4 162146204 162146315 -40182032 - L1ME LINE L1 -831 5315 5204 1004 218 66 30 chr4 162146362 162146633 -40181714 - MER21B LTR ERV1 -485 378 98 286 253 0 36 chr4 162146696 162146779 -40181568 - MER21B LTR ERV1 -783 80 1 1586 226 94 91 chr4 162146879 162146950 -40181397 - MER63D DNA MER1_type 0 1061 992 1711 191 93 34 chr4 162146950 162147368 -40180979 - LTR47B LTR ERVL 0 443 1 1586 226 94 91 chr4 162147368 162148296 -40180051 - MER63D DNA MER1_type -69 992 56 243 0 0 0 chr4 162148296 162148323 -40180024 + (CA)n Simple_repeat Simple_repeat 2 28 0 1586 226 94 91 chr4 162148323 162148380 -40179967 - MER63D DNA MER1_type -1005 56 1 2714 32 3 6 chr4 162148457 162148768 -40179579 + AluY SINE Alu 1 310 -1 1164 185 153 20 chr4 162149202 162149334 -40179013 + AluJo SINE Alu 1 114 -188 1774 177 3 17 chr4 162149334 162149633 -40178714 + AluJo SINE Alu 1 295 -17 1164 185 153 20 chr4 162149633 162149754 -40178593 + AluJo SINE Alu 114 288 -14 27 0 0 0 chr4 162149754 162149781 -40178566 + AT_rich Low_complexity Low_complexity 1 27 0 2024 158 75 64 chr4 162150909 162151365 -40176982 + MLT2C2 LTR ERVL 4 464 0 296 356 20 0 chr4 162151934 162152035 -40176312 + L2 LINE L2 3161 3263 -9 571 292 73 60 chr4 162152069 162152302 -40176045 - MIR SINE MIR -19 243 8 375 215 0 0 chr4 162152489 162152554 -40175793 + MIR3 SINE MIR 112 176 -32 2070 132 0 29 chr4 162152593 162152903 -40175444 - AluSx SINE Alu -11 301 1 1846 174 0 10 chr4 162153709 162154002 -40174345 + AluJo SINE Alu 1 290 -22 2307 90 3 7 chr4 162154632 162154933 -40173414 + AluSx SINE Alu 1 300 -12 1898 163 3 0 chr4 162155804 162156104 -40172243 + AluJo SINE Alu 1 301 -11 1642 224 57 13 chr4 162158126 162158514 -40169833 - MLT1J LTR MaLR -84 427 23 525 312 14 0 chr4 162159162 162159300 -40169047 + MIR SINE MIR 9 148 -114 1361 220 81 60 chr4 162159340 162159456 -40168891 - MLT1D LTR MaLR -22 483 371 2311 100 10 0 chr4 162159456 162159757 -40168590 + AluSq SINE Alu 1 304 -9 1361 220 81 60 chr4 162159757 162160109 -40168238 - MLT1D LTR MaLR -134 371 5 356 310 0 0 chr4 162160118 162160234 -40168113 + MIR SINE MIR 147 262 0 280 0 0 0 chr4 162160241 162160272 -40168075 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2238 105 3 3 chr4 162160272 162160558 -40167789 - AluSq SINE Alu -27 286 1 441 204 170 48 chr4 162161105 162161252 -40167095 - MLT1I LTR MaLR -43 366 202 445 304 30 0 chr4 162163429 162163564 -40164783 - Charlie8 DNA MER1_type -2241 176 38 1634 188 45 0 chr4 162163793 162164081 -40164266 + AluJo SINE Alu 1 301 -11 1023 207 43 0 chr4 162164219 162164427 -40163920 - MIR SINE MIR -34 228 12 369 0 0 0 chr4 162164802 162164843 -40163504 + (CA)n Simple_repeat Simple_repeat 2 42 0 1322 203 17 24 chr4 162164843 162165133 -40163214 - AluJb SINE Alu -24 288 1 865 132 7 15 chr4 162165133 162165269 -40163078 - AluJo SINE Alu -177 135 1 307 319 25 32 chr4 162165416 162165573 -40162774 - L1ME3A LINE L1 -8 6162 6007 833 294 66 7 chr4 162165577 162166106 -40162241 - L1MD3 LINE L1 -604 5560 5238 375 340 48 43 chr4 162166115 162166303 -40162044 + L3 LINE CR1 174 362 -1215 203 298 143 0 chr4 162166377 162166461 -40161886 - MIR SINE MIR -50 212 117 197 219 211 53 chr4 162166506 162166620 -40161727 + L3 LINE CR1 398 529 -1048 1676 181 14 0 chr4 162166734 162167022 -40161325 + AluJo SINE Alu 1 292 -20 4391 186 22 10 chr4 162167042 162167814 -40160533 + L1PA14 LINE L1 10 790 -6791 7684 172 11 17 chr4 162167818 162169244 -40159103 + L1PA14 LINE L1 4288 5704 -1880 15358 186 76 22 chr4 162169256 162169607 -40158740 - L1PB1 LINE L1 -8 6859 6529 216 0 0 0 chr4 162169607 162169631 -40158716 + (TG)n Simple_repeat Simple_repeat 2 25 0 15358 186 76 22 chr4 162169631 162175733 -40152614 - L1PB1 LINE L1 -338 6529 6 5805 120 14 26 chr4 162175757 162176806 -40151541 + L1PA14 LINE L1 5691 6739 -860 1976 119 42 3 chr4 162176806 162176922 -40151425 + AluSx SINE Alu 1 111 -201 372 22 0 0 chr4 162176922 162176967 -40151380 + (CA)n Simple_repeat Simple_repeat 2 46 0 1976 119 42 3 chr4 162176967 162177136 -40151211 + AluSx SINE Alu 111 297 -15 5805 120 14 26 chr4 162177136 162177985 -40150362 + L1PA14 LINE L1 6739 7597 -2 1615 77 0 14 chr4 162178100 162178308 -40150039 + AluY SINE Alu 89 293 -18 1236 190 18 102 chr4 162278354 162278686 -40049661 - MLT1A1 LTR MaLR -61 304 1 2430 48 3 19 chr4 162278831 162279147 -40049200 - AluY SINE Alu 0 311 1 245 250 83 0 chr4 162279803 162279887 -40048460 - L2 LINE L2 -189 3083 2993 1897 119 7 7 chr4 162279894 162280179 -40048168 + AluSx SINE Alu 7 291 -21 491 123 0 0 chr4 162280182 162280247 -40048100 + AluSc SINE Alu 134 198 -111 637 154 0 10 chr4 162280531 162280635 -40047712 + AluJb SINE Alu 2 104 -208 1220 137 0 11 chr4 162280725 162280915 -40047432 + AluSg/x SINE Alu 107 294 -16 288 0 0 0 chr4 162280916 162280948 -40047399 + (CA)n Simple_repeat Simple_repeat 2 33 0 291 157 0 0 chr4 162280951 162281002 -40047345 + (TA)n Simple_repeat Simple_repeat 2 52 0 810 217 20 0 chr4 162281642 162281794 -40046553 + MER58B DNA MER1_type 186 340 -1 825 255 58 10 chr4 162283520 162283728 -40044619 + MIR SINE MIR 34 251 -11 193 233 23 0 chr4 162283941 162283984 -40044363 + L2 LINE L2 3138 3181 -91 1884 97 0 8 chr4 162284156 162284415 -40043932 - AluSx SINE Alu -55 257 1 198 0 0 0 chr4 162284460 162284482 -40043865 + (CAGTG)n Simple_repeat Simple_repeat 1 22 0 216 246 16 16 chr4 162284539 162284600 -40043747 + MIR SINE MIR 157 217 -45 337 279 68 112 chr4 162284732 162284983 -40043364 + MLT1J LTR MaLR 156 395 -116 1867 124 3 7 chr4 162285831 162286113 -40042234 - AluSx SINE Alu -5 307 27 1737 148 3 20 chr4 162286765 162287068 -40041279 - AluSx SINE Alu 0 312 15 1809 146 0 20 chr4 162287125 162287426 -40040921 - AluJb SINE Alu -16 296 2 756 135 0 9 chr4 162287716 162287827 -40040520 + FLAM_C SINE Alu 2 111 -32 1636 229 81 34 chr4 162288068 162288675 -40039672 + L1ME3 LINE L1 5332 5962 -208 356 201 88 82 chr4 162288734 162288928 -40039419 + L1ME3 LINE L1 5967 6161 -1 207 0 0 0 chr4 162290814 162290837 -40037510 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 29 28 0 0 chr4 162292115 162292151 -40036196 + GC_rich Low_complexity Low_complexity 1 36 0 2191 90 0 13 chr4 162294203 162294503 -40033844 - AluSx SINE Alu -16 296 1 184 179 89 36 chr4 162294560 162294616 -40033731 - L2 LINE L2 -93 3220 3162 24 0 0 0 chr4 162295516 162295540 -40032807 + AT_rich Low_complexity Low_complexity 1 24 0 1361 153 58 8 chr4 162296192 162296434 -40031913 + MIR SINE MIR 9 262 0 583 195 152 38 chr4 162297179 162297389 -40030958 - HsTC2 DNA Tc2 -27 1871 1638 727 263 115 8 chr4 162297405 162297648 -40030699 - HsTC2 DNA Tc2 -1625 273 5 1594 141 25 11 chr4 162298120 162298404 -40029943 + L1MB8 LINE L1 5891 6178 0 1212 166 148 65 chr4 162299165 162299502 -40028845 - MER47A DNA MER2_type 0 366 2 921 153 153 0 chr4 162299541 162299730 -40028617 - MSTB LTR MaLR 0 426 209 5590 174 43 4 chr4 162299730 162300715 -40027632 - MSTB1-int LTR MaLR -628 1023 1 1295 106 97 9 chr4 162300717 162300944 -40027403 - MSTB1 LTR MaLR -4 428 182 560 238 146 6 chr4 162300996 162301194 -40027153 - MSTB LTR MaLR -185 243 20 244 194 29 50 chr4 162301275 162301414 -40026933 + (GTGTG)n Simple_repeat Simple_repeat 2 137 0 1955 154 43 3 chr4 162304347 162304671 -40023676 - MER1B DNA MER1_type 0 337 1 1321 220 85 43 chr4 162304793 162305239 -40023108 - MLT1C LTR MaLR -2 465 1 2111 91 0 20 chr4 162305602 162305934 -40022413 - AluSc SINE Alu 0 309 1 533 294 76 5 chr4 162306146 162306330 -40022017 - MIR SINE MIR -65 197 1 799 214 13 6 chr4 162306866 162307025 -40021322 + AluJb SINE Alu 143 302 -10 1297 183 5 0 chr4 162307025 162307238 -40021109 + MLT1A1 LTR MaLR 152 365 0 2043 100 3 13 chr4 162307450 162307750 -40020597 + AluSx SINE Alu 15 311 -1 1182 118 0 0 chr4 162307750 162307911 -40020436 + AluSg/x SINE Alu 134 294 -18 39 22 0 0 chr4 162307912 162307958 -40020389 + AT_rich Low_complexity Low_complexity 1 46 0 506 306 16 32 chr4 162308475 162308661 -40019686 + MER5A DNA MER1_type 7 189 0 467 203 0 0 chr4 162308678 162308757 -40019590 - MIR SINE MIR -63 145 67 319 206 235 0 chr4 162309921 162310030 -40018317 - MIR SINE MIR -62 146 24 230 246 18 0 chr4 162310150 162310207 -40018140 + MIR SINE MIR 43 100 -108 227 322 0 0 chr4 162310209 162310268 -40018079 + L3 LINE CR1 1518 1576 -1 2011 117 3 7 chr4 162310383 162310682 -40017665 - AluSx SINE Alu -14 298 1 539 287 72 65 chr4 162310836 162311010 -40017337 + MLT1J LTR MaLR 231 409 -102 1308 177 35 79 chr4 162311010 162311326 -40017021 - AluJb SINE Alu -10 302 1 539 287 72 65 chr4 162311326 162311430 -40016917 + MLT1J LTR MaLR 409 511 0 350 366 60 13 chr4 162311448 162311683 -40016664 + L2 LINE L2 2239 2484 -830 284 326 207 35 chr4 162311704 162312047 -40016300 - L2 LINE L2 -1 3271 2870 205 188 25 125 chr4 162312088 162312168 -40016179 - L2 LINE L2 -531 2783 2712 201 302 12 12 chr4 162312171 162312257 -40016090 + CT-rich Low_complexity Low_complexity 3 88 0 311 269 21 0 chr4 162313480 162313573 -40014774 - L1ME4a LINE L1 -17 6104 6010 227 114 23 0 chr4 162313747 162313791 -40014556 + (CCCA)n Simple_repeat Simple_repeat 2 46 0 318 289 61 77 chr4 162313921 162314233 -40014114 + MLT1K LTR MaLR 278 584 -4 291 54 0 0 chr4 162314304 162314341 -40014006 + (TG)n Simple_repeat Simple_repeat 2 38 0 189 0 0 0 chr4 162314340 162314361 -40013986 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 224 244 209 12 chr4 162315811 162315897 -40012450 - L2 LINE L2 -21 3251 3149 2722 226 59 5 chr4 162316167 162316729 -40011618 + MLT1G1 LTR MaLR 4 595 0 913 280 14 17 chr4 162317373 162317666 -40010681 + AluJb SINE Alu 21 312 0 773 241 96 27 chr4 162317750 162318011 -40010336 - L1MC4 LINE L1 -1305 6737 6459 417 260 78 86 chr4 162318661 162318930 -40009417 + HAL1 LINE L1 39 305 -2202 315 227 206 0 chr4 162318962 162319059 -40009288 + HAL1 LINE L1 821 937 -1570 441 303 119 23 chr4 162319076 162319386 -40008961 + HAL1 LINE L1 2166 2505 -2 271 263 101 10 chr4 162319483 162319582 -40008765 + MIR SINE MIR 47 154 -108 2188 166 26 16 chr4 162319592 162319978 -40008369 - MLT1B LTR MaLR 0 390 1 212 242 45 0 chr4 162319990 162320056 -40008291 - L2 LINE L2 0 3272 3204 474 291 57 6 chr4 162320259 162320434 -40007913 - MIR SINE MIR 0 262 79 307 313 62 36 chr4 162320547 162320742 -40007605 - L1ME3A LINE L1 -6 6164 5965 243 0 0 0 chr4 162320763 162320790 -40007557 + (CA)n Simple_repeat Simple_repeat 2 28 0 2402 87 0 0 chr4 162321583 162321882 -40006465 + AluSc SINE Alu 1 299 -10 1032 344 57 50 chr4 162322211 162322315 -40006032 - HERV16 LTR ERVL -3718 1278 1176 1718 165 7 36 chr4 162322315 162322618 -40005729 + AluJb SINE Alu 1 294 -18 1032 344 57 50 chr4 162322618 162323278 -40005069 - HERV16 LTR ERVL -3820 1176 523 1604 176 3 25 chr4 162323278 162323562 -40004785 + AluJb SINE Alu 1 278 -34 1034 61 49 0 chr4 162323563 162323727 -40004620 + GA-rich Low_complexity Low_complexity 2 173 0 1032 344 57 50 chr4 162323727 162323869 -40004478 - HERV16 LTR ERVL -4472 524 362 207 298 18 0 chr4 162324219 162324276 -40004071 - MIR SINE MIR -59 149 92 198 0 0 0 chr4 162324881 162324903 -40003444 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 927 98 49 0 chr4 162324903 162325025 -40003322 - AluSq/x SINE Alu -183 130 3 1593 165 75 7 chr4 162325028 162325307 -40003040 - L1PA16 LINE L1 -8 6158 5861 183 402 8 8 chr4 162325394 162325516 -40002831 - MER5A DNA MER1_type -23 166 45 1073 270 56 66 chr4 162325612 162325874 -40002473 - LTR33 LTR ERVL -6 515 259 2700 143 59 15 chr4 162325874 162326349 -40001998 + L1MB4 LINE L1 5685 6180 0 1073 270 56 66 chr4 162326349 162326604 -40001743 - LTR33 LTR ERVL -262 259 3 503 291 35 0 chr4 162326805 162326946 -40001401 + L1ME4a LINE L1 5606 5751 -370 287 270 124 0 chr4 162327017 162327154 -40001193 + L1ME4a LINE L1 5966 6119 -2 2119 109 3 3 chr4 162328231 162328516 -39999831 - AluSc SINE Alu -24 285 1 254 241 116 45 chr4 162328653 162328765 -39999582 - MER5B DNA MER1_type 0 178 59 2487 77 0 0 chr4 162329419 162329730 -39998617 - AluY SINE Alu 0 311 1 1499 164 260 26 chr4 162329804 162330441 -39997906 + SATR1 Satellite Satellite 1 785 -1 1401 187 209 22 chr4 162330464 162330972 -39997375 + SATR1 Satellite Satellite 1 603 -95 204 40 0 0 chr4 162332120 162332145 -39996202 + (T)n Simple_repeat Simple_repeat 1 25 0 25 0 0 0 chr4 162332323 162332348 -39995999 + GC_rich Low_complexity Low_complexity 1 25 0 234 172 35 35 chr4 162332565 162332623 -39995724 - MER52A LTR ERV1 -1697 58 1 1478 177 75 0 chr4 162332721 162332987 -39995360 - AluJo SINE Alu -22 290 5 957 172 65 0 chr4 162333014 162333183 -39995164 - AluJb SINE Alu 0 312 133 246 295 62 19 chr4 162333649 162333779 -39994568 - MIR SINE MIR -66 142 2 23 0 0 0 chr4 162333929 162333952 -39994395 + AT_rich Low_complexity Low_complexity 1 23 0 2255 114 3 0 chr4 162333957 162334264 -39994083 + AluSp SINE Alu 1 308 -5 2099 122 0 3 chr4 162334562 162334879 -39993468 + AluSx SINE Alu 1 312 0 21 36 0 0 chr4 162335168 162335196 -39993151 + AT_rich Low_complexity Low_complexity 1 28 0 317 262 16 66 chr4 162335355 162335477 -39992870 - L2 LINE L2 -4 3268 3153 2219 103 3 7 chr4 162335544 162335844 -39992503 + AluSq SINE Alu 1 299 -14 2179 128 0 0 chr4 162335997 162336294 -39992053 + AluJb SINE Alu 1 297 -15 426 39 0 0 chr4 162336958 162337010 -39991337 + (TG)n Simple_repeat Simple_repeat 1 52 0 2152 98 11 0 chr4 162337010 162337286 -39991061 - AluSx SINE Alu -33 279 1 252 220 221 0 chr4 162337387 162337536 -39990811 - L1MC4 LINE L1 -2 8040 7777 1734 150 8 0 chr4 162337546 162337812 -39990535 + AluSx SINE Alu 1 268 -44 605 124 0 0 chr4 162337812 162337901 -39990446 + AluSg/x SINE Alu 216 304 -5 728 248 102 0 chr4 162337952 162338178 -39990169 - L1MC4 LINE L1 -264 7778 7530 206 303 134 38 chr4 162338339 162338577 -39989770 - L2 LINE L2 -368 2946 2686 349 330 93 66 chr4 162338711 162339163 -39989184 - MLT1K LTR MaLR -110 478 15 1078 145 13 0 chr4 162339346 162339505 -39988842 - AluSg/x SINE Alu -16 296 136 810 118 0 31 chr4 162340008 162340135 -39988212 - FLAM_C SINE Alu -2 141 19 492 291 80 73 chr4 162340253 162340558 -39987789 - L1M4 LINE L1 -1094 5052 4741 1714 69 60 5 chr4 162340558 162340776 -39987571 + MER30 DNA MER1_type 1 230 0 492 291 80 73 chr4 162340776 162340934 -39987413 - L1M4 LINE L1 -1405 4741 4586 2213 106 0 0 chr4 162341315 162341623 -39986724 + AluSx SINE Alu 1 308 0 203 156 0 0 chr4 162342053 162342085 -39986262 + (ATG)n Simple_repeat Simple_repeat 2 33 0 233 319 106 50 chr4 162342095 162342236 -39986111 - MIR SINE MIR -54 208 60 205 96 58 19 chr4 162342367 162342419 -39985928 + (TTG)n Simple_repeat Simple_repeat 2 55 0 834 192 0 0 chr4 162342434 162342564 -39985783 + FLAM_C SINE Alu 1 130 -3 2007 139 10 3 chr4 162342575 162342877 -39985470 + AluSx SINE Alu 1 304 -8 186 263 0 0 chr4 162343259 162343316 -39985031 + (TG)n Simple_repeat Simple_repeat 2 58 0 2190 89 20 0 chr4 162343816 162344109 -39984238 + AluY SINE Alu 1 299 -12 2735 127 54 58 chr4 162344137 162344657 -39983690 - L1MC2 LINE L1 0 6344 5827 283 299 130 0 chr4 162344674 162344751 -39983596 - L2 LINE L2 -17 3296 3210 1623 175 28 7 chr4 162345015 162345182 -39983165 - AluJo SINE Alu -15 297 120 198 0 0 0 chr4 162345182 162345204 -39983143 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1623 175 28 7 chr4 162345204 162345327 -39983020 - AluJo SINE Alu -192 120 1 730 139 20 20 chr4 162346887 162347038 -39981309 - MER96B DNA MER1_type? -182 235 85 272 240 40 0 chr4 162347110 162347185 -39981162 + L1MC4 LINE L1 7594 7671 -371 416 200 0 12 chr4 162347196 162347281 -39981066 - MER96B DNA MER1_type? -333 84 1 315 208 28 0 chr4 162348009 162348081 -39980266 - L1ME2 LINE L1 -192 5972 5899 502 289 132 22 chr4 162348117 162348526 -39979821 + L1MC4 LINE L1 7588 8041 -1 321 215 0 32 chr4 162348684 162348777 -39979570 + L1ME1 LINE L1 4930 5019 -1127 1184 143 0 5 chr4 162348778 162348967 -39979380 + AluSg/x SINE Alu 119 306 -6 594 206 7 15 chr4 162348968 162349104 -39979243 + L1ME1 LINE L1 5027 5161 -985 * 1612 234 45 41 chr4 162349101 162349584 -39978763 + L1ME1 LINE L1 5414 5898 -268 785 295 60 9 chr4 162349659 162349937 -39978410 - L1MC4 LINE L1 -567 7475 7176 234 0 0 0 chr4 162349937 162349963 -39978384 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 785 295 60 9 chr4 162349963 162350016 -39978331 - L1MC4 LINE L1 -866 7176 7127 427 260 103 34 chr4 162350223 162350369 -39977978 - L2 LINE L2 0 3313 3158 1814 151 16 19 chr4 162350378 162350690 -39977657 + AluJb SINE Alu 1 311 -1 2071 164 40 32 chr4 162352038 162352574 -39975773 + MLT2A2 LTR ERVL 1 544 -10 2235 118 0 0 chr4 162352634 162352930 -39975417 + AluSx SINE Alu 1 296 -16 340 341 63 6 chr4 162353475 162353792 -39974555 - L2 LINE L2 -1000 2314 1980 3126 131 4 0 chr4 162353897 162354348 -39973999 - L1PA15 LINE L1 -1 6164 5712 2272 104 3 0 chr4 162355465 162355763 -39972584 - AluSx SINE Alu -13 299 1 216 0 0 0 chr4 162355851 162355875 -39972472 + (T)n Simple_repeat Simple_repeat 1 24 0 446 173 0 12 chr4 162355945 162356026 -39972321 + MIR SINE MIR 106 185 -77 491 243 141 28 chr4 162356237 162356414 -39971933 - L2 LINE L2 -1 3312 3116 433 252 6 88 chr4 162356944 162357072 -39971275 - MER112 DNA MER1_type -1 259 145 2057 140 10 0 chr4 162357072 162357372 -39970975 + AluSx SINE Alu 1 303 -9 433 252 6 88 chr4 162357372 162357402 -39970945 - MER112 DNA MER1_type -115 145 114 227 191 21 0 chr4 162357774 162357821 -39970526 + MER116 DNA Mariner 21 68 -12 192 77 0 0 chr4 162358159 162358185 -39970162 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 319 272 62 37 chr4 162358912 162359074 -39969273 + MIR SINE MIR 64 229 -33 2218 127 0 0 chr4 162359335 162359643 -39968704 - AluSx SINE Alu -4 308 1 2368 103 3 0 chr4 162359985 162360296 -39968051 + AluSp SINE Alu 1 312 -1 258 32 0 0 chr4 162360296 162360327 -39968020 + (TA)n Simple_repeat Simple_repeat 2 32 0 940 130 93 0 chr4 162360328 162360489 -39967858 + AluSg/x SINE Alu 125 300 -10 227 239 45 15 chr4 162360544 162360611 -39967736 + MER113 DNA MER1_type? 453 521 0 264 254 0 0 chr4 162360621 162360676 -39967671 - MIR SINE MIR -60 148 94 201 108 0 0 chr4 162360881 162360918 -39967429 + (A)n Simple_repeat Simple_repeat 1 37 0 189 0 0 0 chr4 162362294 162362315 -39966032 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 348 280 85 26 chr4 162363621 162363810 -39964537 + L3b LINE CR1 1112 1311 -272 628 361 51 9 chr4 162364931 162365263 -39963084 + L2 LINE L2 2362 2707 -607 1092 182 3 87 chr4 162365272 162365558 -39962789 + L1MC5 LINE L1 6698 6959 -1002 740 209 15 29 chr4 162365699 162365905 -39962442 + L1M4 LINE L1 4457 4659 -1487 22 35 0 0 chr4 162366279 162366308 -39962039 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr4 162366583 162366604 -39961743 + (CA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr4 162367460 162367482 -39960865 + AT_rich Low_complexity Low_complexity 1 22 0 426 85 0 0 chr4 162367618 162367677 -39960670 + (TG)n Simple_repeat Simple_repeat 2 60 0 22 35 0 0 chr4 162367677 162367706 -39960641 + AT_rich Low_complexity Low_complexity 1 29 0 1340 203 3 40 chr4 162367755 162368055 -39960292 - AluJo SINE Alu -21 291 3 447 305 37 42 chr4 162368304 162368494 -39959853 + MIR SINE MIR 72 260 -2 6138 91 39 3 chr4 162369290 162370232 -39958115 + L1PA14 LINE L1 5189 6159 -2 659 239 130 35 chr4 162371238 162371468 -39956879 + MIR SINE MIR 5 256 -6 326 252 207 7 chr4 162371606 162371741 -39956606 - L2 LINE L2 -8 3305 3144 783 228 66 44 chr4 162372600 162372828 -39955519 + MIR SINE MIR 4 236 -26 613 203 75 75 chr4 162372841 162373028 -39955319 + MER20 DNA MER1_type 31 217 -2 1474 77 0 10 chr4 162373537 162373732 -39954615 + AluSg/x SINE Alu 115 307 -3 445 188 174 7 chr4 162373900 162374038 -39954309 + MER105 DNA DNA 20 180 -24 205 250 0 44 chr4 162374066 162374134 -39954213 + (TATG)n Simple_repeat Simple_repeat 4 68 0 439 335 94 44 chr4 162374134 162374474 -39953873 + L2 LINE L2 2916 3272 0 310 255 85 11 chr4 162374527 162374621 -39953726 + L2 LINE L2 3168 3268 -4 2497 30 13 0 chr4 162375082 162375386 -39952961 - AluYb8 SINE Alu -10 308 1 553 311 91 29 chr4 162375490 162375731 -39952616 - MIR SINE MIR -1 261 6 2294 85 0 0 chr4 162376203 162376521 -39951826 - AluY SINE Alu 0 318 1 24 0 0 0 chr4 162376570 162376594 -39951753 + AT_rich Low_complexity Low_complexity 1 24 0 1535 206 3 7 chr4 162376941 162377227 -39951120 + AluJo SINE Alu 1 285 -27 2180 123 0 0 chr4 162377249 162377550 -39950797 + AluSx SINE Alu 1 301 -11 965 257 31 12 chr4 162377766 162378023 -39950324 - MIR SINE MIR 0 262 1 229 229 0 0 chr4 162378060 162378108 -39950239 + MIR SINE MIR 212 259 -3 1989 138 10 0 chr4 162378414 162378710 -39949637 + AluJb SINE Alu 1 299 -13 23 0 0 0 chr4 162378792 162378815 -39949532 + AT_rich Low_complexity Low_complexity 1 23 0 1677 126 71 39 chr4 162379012 162379322 -39949025 - MER1B DNA MER1_type -1 338 19 1211 196 76 33 chr4 162379324 162379625 -39948722 - MLT1E3 LTR MaLR -16 608 295 257 257 27 0 chr4 162379673 162379747 -39948600 - HsTC2 DNA Tc2 -32 1866 1791 750 301 37 13 chr4 162379774 162380073 -39948274 - HsTC2 DNA Tc2 -1508 390 85 445 250 15 44 chr4 162380140 162380276 -39948071 - L1ME1 LINE L1 -112 6054 5923 21 0 0 0 chr4 162380310 162380331 -39948016 + AT_rich Low_complexity Low_complexity 1 21 0 2087 174 56 14 chr4 162380651 162381065 -39947282 - MSTB1 LTR MaLR -1 431 1 1240 163 67 32 chr4 162381341 162381654 -39946693 - MER33 DNA MER1_type 0 324 1 283 139 3 31 chr4 162382263 162382327 -39946020 - L1MB7 LINE L1 0 6167 6111 2073 170 33 21 chr4 162382333 162382378 -39945969 - L1MB7 LINE L1 -27 6157 6114 2114 96 11 4 chr4 162382378 162382680 -39945667 + AluSq SINE Alu 1 304 0 2073 170 33 21 chr4 162382680 162383062 -39945285 - L1MB7 LINE L1 -70 6114 5724 1039 278 53 8 chr4 162383706 162384062 -39944285 - L1MC4a LINE L1 -1844 5964 5593 197 281 18 0 chr4 162384146 162384203 -39944144 - MIR SINE MIR -123 139 82 602 100 8 83 chr4 162384378 162384498 -39943849 + FLAM_C SINE Alu 27 137 -6 392 141 78 0 chr4 162384506 162384570 -39943777 + FRAM SINE Alu 73 141 -25 369 285 69 19 chr4 162385069 162385258 -39943089 + L1MC/D LINE L1 5467 5664 -582 369 147 0 15 chr4 162385376 162385444 -39942903 - L1MB7 LINE L1 -366 5755 5689 280 267 23 47 chr4 162385538 162385624 -39942723 + MIR SINE MIR 36 119 -89 2765 210 47 119 chr4 162386161 162386881 -39941466 - L1MC4a LINE L1 -17 7791 7021 1509 155 20 8 chr4 162386881 162387126 -39941221 - AluJb SINE Alu -64 248 1 2765 210 47 119 chr4 162387126 162387450 -39940897 - L1MC4a LINE L1 -787 7021 6837 1754 159 0 57 chr4 162387450 162387765 -39940582 - AluJo SINE Alu -13 299 3 2765 210 47 119 chr4 162387765 162387890 -39940457 - L1MC4a LINE L1 -971 6837 6705 568 159 223 19 chr4 162388664 162388821 -39939526 + MER5A DNA MER1_type 1 189 0 5445 159 97 13 chr4 162388951 162389106 -39939241 + Tigger3b DNA MER2_type 58 199 -2829 2419 69 0 0 chr4 162389106 162389396 -39938951 + AluY SINE Alu 1 290 -21 5445 159 97 13 chr4 162389396 162389530 -39938817 + Tigger3b DNA MER2_type 199 320 -2708 1806 144 4 0 chr4 162389530 162389793 -39938554 + AluSx SINE Alu 35 298 -14 5445 159 97 13 chr4 162389793 162390585 -39937762 + Tigger3b DNA MER2_type 320 1231 0 8930 192 70 45 chr4 162390585 162391965 -39936382 - Charlie5 DNA MER1_type -19 2605 1130 2130 96 10 7 chr4 162391965 162392257 -39936090 + AluSx SINE Alu 1 293 -19 8930 192 70 45 chr4 162392257 162393409 -39934938 - Charlie5 DNA MER1_type -1494 1130 9 426 257 14 29 chr4 162394338 162394478 -39933869 - MER103 DNA DNA -15 151 14 216 0 0 0 chr4 162395016 162395040 -39933307 + (T)n Simple_repeat Simple_repeat 1 24 0 670 316 120 50 chr4 162395052 162395719 -39932628 + ERVL LTR ERVL 1013 1726 -4038 578 137 26 86 chr4 162395756 162395873 -39932474 + AluJb SINE Alu 75 184 -128 774 288 118 43 chr4 162396152 162396575 -39931772 + LTR67 LTR ERVL 100 554 -3 190 313 87 17 chr4 162396890 162397005 -39931342 + L2 LINE L2 3159 3281 -32 489 284 110 27 chr4 162397708 162398122 -39930225 - L1MC/D LINE L1 -505 5659 5258 297 0 0 0 chr4 162398160 162398193 -39930154 + (TG)n Simple_repeat Simple_repeat 1 33 0 2240 106 3 0 chr4 162398194 162398496 -39929851 - AluSx SINE Alu -9 303 1 307 357 117 19 chr4 162398542 162398808 -39929539 - L1MC/D LINE L1 -1310 4836 4545 1724 119 130 0 chr4 162398850 162399127 -39929220 - AluSq SINE Alu 0 313 1 307 328 73 31 chr4 162399287 162399341 -39929006 - L1MC/D LINE L1 -1818 4328 4278 1694 199 0 7 chr4 162399341 162399642 -39928705 - AluJo SINE Alu -13 299 1 307 328 73 31 chr4 162399642 162399779 -39928568 - L1MC/D LINE L1 -1868 4278 4129 21 0 0 0 chr4 162399981 162400002 -39928345 + AT_rich Low_complexity Low_complexity 1 21 0 2014 134 3 26 chr4 162400080 162400386 -39927961 - AluSx SINE Alu -13 299 1 366 264 64 16 chr4 162400596 162400721 -39927626 + MIR SINE MIR 90 220 -42 341 367 31 10 chr4 162400739 162400935 -39927412 + L2 LINE L2 569 768 -2546 490 357 189 22 chr4 162400954 162401683 -39926664 + L2 LINE L2 1098 1704 -1610 1579 177 97 0 chr4 162401683 162402033 -39926314 - MLT1B LTR MaLR -4 386 3 490 357 189 22 chr4 162402033 162402072 -39926275 + L2 LINE L2 1704 1735 -1579 2262 117 0 0 chr4 162402072 162402381 -39925966 + AluSx SINE Alu 1 309 -3 490 357 189 22 chr4 162402381 162402706 -39925641 + L2 LINE L2 1735 2375 -939 2260 208 84 39 chr4 162402895 162403617 -39924730 + L1ME2 LINE L1 5381 6135 -29 274 239 46 31 chr4 162403680 162403810 -39924537 + L1MC5 LINE L1 7782 7913 -48 502 268 151 0 chr4 162404932 162405111 -39923236 + MIR SINE MIR 36 241 -21 1683 155 30 6 chr4 162405178 162405513 -39922834 - L1MB4 LINE L1 0 6180 5838 251 237 86 21 chr4 162405544 162405637 -39922710 + L1ME LINE L1 5640 5738 -426 27 0 0 0 chr4 162407870 162407897 -39920450 + AT_rich Low_complexity Low_complexity 1 27 0 1169 234 103 11 chr4 162408164 162408523 -39919824 - L1MC4 LINE L1 -642 7400 7009 6276 131 77 15 chr4 162408529 162409655 -39918692 + Tigger3b DNA MER2_type 36 1231 0 1012 243 69 17 chr4 162409662 162409950 -39918397 - L1MC4 LINE L1 -1041 7001 6699 371 307 102 35 chr4 162409961 162410244 -39918103 - L1MC4a LINE L1 -1229 6579 6278 2328 102 0 0 chr4 162410558 162410853 -39917494 - AluSx SINE Alu -13 299 5 21 0 0 0 chr4 162410909 162410930 -39917417 + AT_rich Low_complexity Low_complexity 1 21 0 404 284 96 75 chr4 162411342 162411726 -39916621 + L1MC4a LINE L1 4399 4790 -1356 1911 154 20 0 chr4 162411809 162412115 -39916232 - AluJb SINE Alu 0 312 1 296 213 120 109 chr4 162412372 162412555 -39915792 + L1MC4a LINE L1 5664 5848 -1960 716 285 193 30 chr4 162412649 162413099 -39915248 + L1MC4a LINE L1 6418 6793 -1015 14098 141 24 11 chr4 162413099 162415485 -39912862 - Tigger1 DNA MER2_type 0 2418 2 716 285 193 30 chr4 162415485 162415870 -39912477 + L1MC4a LINE L1 6793 7389 -419 263 328 27 35 chr4 162415884 162416141 -39912206 + L1MC4 LINE L1 7317 7674 -368 4145 181 46 6 chr4 162416621 162417463 -39910884 + L1MB4 LINE L1 5292 6167 -13 1369 238 21 66 chr4 162418301 162418785 -39909562 - LTR40b LTR ERVL 0 462 1 3448 240 78 13 chr4 162418869 162420077 -39908270 - L1M4 LINE L1 -793 5353 4068 1411 202 52 0 chr4 162420077 162420377 -39907970 - AluJo SINE Alu 0 314 1 911 163 7 0 chr4 162420425 162420572 -39907775 - AluSg/x SINE Alu -20 292 145 2225 99 7 0 chr4 162420573 162420856 -39907491 + AluSc SINE Alu 2 286 -23 432 286 60 16 chr4 162421379 162421561 -39906786 + MER110-int LTR ERV1 4307 4496 -151 1150 174 20 15 chr4 162421837 162422032 -39906315 + AluJo SINE Alu 86 281 -31 1137 154 23 23 chr4 162422273 162422494 -39905853 - AluJb SINE Alu -7 305 85 1543 238 84 44 chr4 162422760 162423605 -39904742 - L1ME3A LINE L1 -19 6151 5191 1919 152 0 10 chr4 162423618 162423914 -39904433 - AluJo SINE Alu -14 298 6 890 171 4 8 chr4 162423919 162424164 -39904183 + CT-rich Low_complexity Low_complexity 1 244 0 27 0 0 0 chr4 162424292 162424319 -39904028 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr4 162424964 162424985 -39903362 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 162425522 162425546 -39902801 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr4 162425682 162425716 -39902631 + AT_rich Low_complexity Low_complexity 1 34 0 3169 193 108 13 chr4 162426782 162427759 -39900588 - L1MB7 LINE L1 -7 6177 5096 2361 115 36 11 chr4 162428067 162428431 -39899916 - THE1C LTR MaLR -2 373 1 2307 77 0 0 chr4 162428590 162428875 -39899472 - AluY SINE Alu -26 285 1 2291 95 3 0 chr4 162428966 162429262 -39899085 - AluSx SINE Alu -15 297 1 2355 95 3 0 chr4 162429669 162429973 -39898374 - AluSx SINE Alu -7 305 1 203 293 17 0 chr4 162431881 162431939 -39896408 + L2 LINE L2 3213 3271 -1 2118 114 3 13 chr4 162432231 162432530 -39895817 - AluSx SINE Alu -16 296 1 22 0 0 0 chr4 162432596 162432618 -39895729 + AT_rich Low_complexity Low_complexity 1 22 0 255 229 25 74 chr4 162432781 162432903 -39895444 + L1ME LINE L1 46 161 -5909 336 272 11 11 chr4 162433042 162433134 -39895213 + L1ME LINE L1 371 462 -5608 622 284 34 64 chr4 162433249 162433503 -39894844 + L1ME LINE L1 275 366 -5616 1068 176 29 5 chr4 162433503 162433708 -39894639 - MER6B DNA MER2_type 0 210 1 622 284 34 64 chr4 162433708 162434019 -39894328 + L1ME LINE L1 366 685 -5297 390 231 13 0 chr4 162434019 162434097 -39894250 - MER2 DNA MER2_type 0 345 267 731 271 169 29 chr4 162434132 162434257 -39894090 + L1ME LINE L1 773 879 -5382 201 39 0 0 chr4 162434257 162434283 -39894064 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1629 112 128 16 chr4 162434288 162434537 -39893810 - AluSx SINE Alu -35 277 1 731 271 169 29 chr4 162434537 162435230 -39893117 + L1ME LINE L1 882 1771 -4490 1154 180 82 0 chr4 162435385 162435618 -39892729 - L1MB4 LINE L1 -8 6172 5921 1729 149 76 3 chr4 162435619 162435934 -39892413 + MER44D DNA MER2_type 2 609 0 2100 79 7 43 chr4 162437217 162437543 -39890804 + AluSg SINE Alu 1 310 0 2534 62 0 7 chr4 162437867 162438175 -39890172 - AluY SINE Alu -5 306 1 2257 236 56 59 chr4 162438190 162438988 -39889359 - L1ME1 LINE L1 -49 6117 5310 1452 170 6 80 chr4 162438988 162439300 -39889047 - AluJo SINE Alu -18 294 6 2257 236 56 59 chr4 162439300 162439517 -39888830 - L1ME1 LINE L1 -856 5310 5094 1318 202 50 7 chr4 162439517 162439794 -39888553 + MLT1D LTR MaLR 3 291 -214 317 127 55 0 chr4 162439799 162439854 -39888493 + MLT1D LTR MaLR 431 488 -17 1810 204 10 12 chr4 162439861 162440262 -39888085 + MLT1D-int LTR MaLR 1 400 -971 31 0 0 0 chr4 162440371 162440402 -39887945 + AT_rich Low_complexity Low_complexity 1 31 0 384 293 67 67 chr4 162441148 162441697 -39886650 + L1MC5 LINE L1 7348 7896 -65 25 65 0 0 chr4 162441697 162441743 -39886604 + AT_rich Low_complexity Low_complexity 1 46 0 302 304 65 42 chr4 162441889 162442106 -39886241 + L2 LINE L2 3092 3313 0 2243 87 10 7 chr4 162442336 162442636 -39885711 - AluSx SINE Alu -11 301 1 875 194 59 40 chr4 162443208 162443633 -39884714 - Charlie1b DNA MER1_type -1 522 1 1500 143 32 46 chr4 162443731 162444011 -39884336 - AluJb SINE Alu -8 304 29 22 35 0 0 chr4 162446678 162446707 -39881640 + AT_rich Low_complexity Low_complexity 1 29 0 181 327 48 29 chr4 162448733 162448837 -39879510 - L2 LINE L2 -1435 1879 1774 220 329 37 24 chr4 162448932 162449014 -39879333 + MIR SINE MIR 21 103 -105 494 258 59 48 chr4 162449545 162449596 -39878751 - MIR SINE MIR -12 250 201 2167 131 0 6 chr4 162449596 162449910 -39878437 - AluSx SINE Alu 0 312 1 494 258 59 48 chr4 162449910 162450044 -39878303 - MIR SINE MIR -61 201 63 720 191 172 0 chr4 162450049 162450206 -39878141 + MER46A DNA MER2_type 53 236 0 1491 185 45 24 chr4 162450410 162450697 -39877650 + AluJb SINE Alu 1 293 -19 258 331 97 29 chr4 162450697 162450862 -39877485 + MER5A DNA MER1_type 10 189 0 755 241 42 109 chr4 162450970 162451359 -39876988 + L1ME4a LINE L1 5536 5874 -247 451 175 0 0 chr4 162451359 162451439 -39876908 - MER116 DNA Mariner 0 80 1 755 241 42 109 chr4 162451439 162451638 -39876709 + L1ME4a LINE L1 5874 6085 -36 2359 85 3 0 chr4 162452249 162452555 -39875792 - AluSp SINE Alu -6 307 1 259 332 116 21 chr4 162452559 162452749 -39875598 - MIR SINE MIR -52 210 3 255 315 42 108 chr4 162452925 162453185 -39875162 - L2 LINE L2 -18 3254 3012 220 156 13 143 chr4 162453207 162453284 -39875063 + MER5A DNA MER1_type 121 187 -2 2313 71 3 7 chr4 162455649 162455945 -39872402 - AluY SINE Alu -9 302 8 2043 137 10 0 chr4 162456848 162457140 -39871207 - AluSx SINE Alu -17 295 1 12375 122 79 75 chr4 162457157 162457350 -39870997 - Tigger1 DNA MER2_type -5 2413 2222 2125 113 10 0 chr4 162457350 162457643 -39870704 - AluSx SINE Alu -16 296 1 12375 122 79 75 chr4 162457643 162458143 -39870204 - Tigger1 DNA MER2_type -196 2222 1726 936 83 0 30 chr4 162458143 162458275 -39870072 - AluSg/x SINE Alu -16 296 169 12375 122 79 75 chr4 162458275 162459852 -39868495 - Tigger1 DNA MER2_type -692 1726 1 1085 161 16 5 chr4 162459854 162460046 -39868301 + Charlie6 DNA MER1_type 3307 3500 0 655 244 74 26 chr4 162460046 162460275 -39868072 + L1MC4 LINE L1 7372 7611 -431 380 282 27 20 chr4 162460276 162460425 -39867922 + L1MC4 LINE L1 7718 7867 -175 351 0 0 0 chr4 162460431 162460470 -39867877 + (TCCCC)n Simple_repeat Simple_repeat 1 39 0 810 204 73 102 chr4 162461356 162461601 -39866746 + MER8 DNA MER2_type 2 239 0 2570 202 85 61 chr4 162462011 162462713 -39865634 + L1ME2 LINE L1 5337 6062 -102 2016 128 0 17 chr4 162462713 162463011 -39865336 - AluSx SINE Alu -19 293 1 2570 202 85 61 chr4 162463011 162463109 -39865238 + L1ME2 LINE L1 6062 6156 -8 1261 162 185 23 chr4 162463886 162464313 -39864034 + LTR54B LTR ERV1 1 496 -2 182 277 64 0 chr4 162464606 162464653 -39863694 - L2 LINE L2 -50 3222 3173 222 37 0 0 chr4 162465542 162465569 -39862778 + (CAA)n Simple_repeat Simple_repeat 1 27 0 399 300 143 13 chr4 162465709 162465939 -39862408 - MIR SINE MIR -2 260 1 2234 92 0 0 chr4 162466332 162466615 -39861732 - AluSp SINE Alu -17 296 14 325 250 148 23 chr4 162466833 162466961 -39861386 - MIR SINE MIR -7 255 112 526 249 122 11 chr4 162467560 162467749 -39860598 + Charlie1 DNA MER1_type 5 214 -2547 * 740 175 7 14 chr4 162467745 162467888 -39860459 + Charlie1 DNA MER1_type 2619 2760 -1 409 297 35 7 chr4 162467930 162468075 -39860272 - MIR3 SINE MIR -27 181 33 306 297 25 42 chr4 162468092 162468210 -39860137 + MIR SINE MIR 140 255 -7 551 288 203 15 chr4 162468214 162468544 -39859803 - L3 LINE CR1 -92 1485 1094 1944 89 8 4 chr4 162468923 162469182 -39859165 + AluSg SINE Alu 37 296 -14 326 220 7 78 chr4 162469188 162469329 -39859018 - L1MEd LINE L1 -4933 1186 1056 637 269 88 71 chr4 162469348 162469701 -39858646 - L1MEd LINE L1 -5443 676 318 182 335 123 49 chr4 162470246 162470447 -39857900 - L2 LINE L2 -455 2859 2644 527 273 168 0 chr4 162470447 162470590 -39857757 + MER5A DNA MER1_type 1 167 -22 24 0 0 0 chr4 162471160 162471184 -39857163 + AT_rich Low_complexity Low_complexity 1 24 0 764 155 39 8 chr4 162471369 162471498 -39856849 + FLAM_C SINE Alu 1 133 -10 873 216 43 91 chr4 162471620 162471972 -39856375 - L1ME3A LINE L1 -96 6074 5740 31 44 0 0 chr4 162472084 162472129 -39856218 + AT_rich Low_complexity Low_complexity 1 45 0 973 293 84 9 chr4 162472212 162472653 -39855694 + L1MC5 LINE L1 7059 7532 -429 12716 114 58 78 chr4 162473406 162473983 -39854364 + Tigger1 DNA MER2_type 2 589 -1829 766 168 0 29 chr4 162473983 162474120 -39854227 - FLAM_C SINE Alu -10 133 1 12716 114 58 78 chr4 162474120 162475869 -39852478 + Tigger1 DNA MER2_type 589 2413 -5 5420 190 125 39 chr4 162475874 162475998 -39852349 - Charlie6 DNA MER1_type -197 3303 3191 477 0 0 0 chr4 162475998 162476051 -39852296 + (TG)n Simple_repeat Simple_repeat 2 54 0 5420 190 125 39 chr4 162476051 162477384 -39850963 - Charlie6 DNA MER1_type -309 3191 1699 324 0 0 0 chr4 162477384 162477420 -39850927 + (TG)n Simple_repeat Simple_repeat 1 36 0 5420 190 125 39 chr4 162477420 162477533 -39850814 - Charlie6 DNA MER1_type -1801 1699 1597 301 258 0 0 chr4 162477552 162477614 -39850733 - LTR16B LTR ERVL 0 464 403 233 307 43 29 chr4 162477664 162477804 -39850543 - LTR16B LTR ERVL -301 163 22 189 328 68 55 chr4 162478156 162478467 -39849880 - L2 LINE L2 -830 2484 2170 642 261 122 89 chr4 162479354 162479952 -39848395 - L2 LINE L2 -2 3311 2707 21 0 0 0 chr4 162479989 162480010 -39848337 + AT_rich Low_complexity Low_complexity 1 21 0 2542 217 34 14 chr4 162481052 162481604 -39846743 - MER82 DNA MER2_type -90 563 1 244 307 30 10 chr4 162481671 162481772 -39846575 - MER112 DNA MER1_type -157 103 1 266 373 42 17 chr4 162481972 162482090 -39846257 + MIR SINE MIR 26 146 -62 573 226 67 76 chr4 162482762 162483076 -39845271 - L1ME4a LINE L1 -204 5917 5607 22 0 0 0 chr4 162483084 162483106 -39845241 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 162483130 162483161 -39845186 + AT_rich Low_complexity Low_complexity 1 31 0 183 42 0 0 chr4 162484071 162484095 -39844252 + (GGA)n Simple_repeat Simple_repeat 2 25 0 315 219 8 17 chr4 162485736 162485855 -39842492 + (TATG)n Simple_repeat Simple_repeat 2 119 0 22 56 0 0 chr4 162487518 162487554 -39840793 + AT_rich Low_complexity Low_complexity 1 36 0 1419 158 158 0 chr4 162487557 162487811 -39840536 + AluJb SINE Alu 1 294 -18 586 275 96 0 chr4 162488385 162488552 -39839795 + MIR SINE MIR 48 230 -32 514 178 122 0 chr4 162489126 162489233 -39839114 - FLAM_A SINE Alu -13 120 1 226 367 11 0 chr4 162489543 162489633 -39838714 + L2 LINE L2 2228 2318 -996 1921 151 3 13 chr4 162490429 162490734 -39837613 - AluJb SINE Alu -6 306 5 420 242 57 93 chr4 162490928 162491176 -39837171 + L1ME4a LINE L1 5802 6040 -81 2081 127 21 9 chr4 162491708 162492039 -39836308 + MER1B DNA MER1_type 3 337 0 2344 100 0 0 chr4 162492052 162492353 -39835994 - AluSx SINE Alu -11 301 1 373 300 64 36 chr4 162492766 162492986 -39835361 - MIR SINE MIR -17 245 20 5444 176 57 8 chr4 162493672 162494863 -39833484 - L1MC1 LINE L1 0 6333 5096 1385 189 0 19 chr4 162494887 162495147 -39833200 + AluJo SINE Alu 1 255 -57 4205 229 43 14 chr4 162495147 162496260 -39832087 - L1MC1 LINE L1 -1053 5093 3948 24 32 0 0 chr4 162497170 162497201 -39831146 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 162497305 162497328 -39831019 + AT_rich Low_complexity Low_complexity 1 23 0 252 0 0 0 chr4 162497810 162497838 -39830509 + (T)n Simple_repeat Simple_repeat 1 28 0 527 197 57 33 chr4 162498008 162498130 -39830217 + FRAM SINE Alu 47 171 -5 243 0 0 0 chr4 162498866 162498893 -39829454 + (T)n Simple_repeat Simple_repeat 1 27 0 591 197 57 0 chr4 162499063 162499185 -39829162 + FRAM SINE Alu 47 175 -1 466 267 78 28 chr4 162501267 162501447 -39826900 + MER5A DNA MER1_type 1 189 0 694 294 91 17 chr4 162501662 162501893 -39826454 + MIR SINE MIR 11 258 -4 22 0 0 0 chr4 162503216 162503238 -39825109 + AT_rich Low_complexity Low_complexity 1 22 0 463 259 0 22 chr4 162503342 162503477 -39824870 + Charlie8 DNA MER1_type 61 192 -2225 1015 270 35 72 chr4 162503900 162504474 -39823873 - MLT1G1 LTR MaLR 0 555 1 547 278 35 23 chr4 162504733 162504906 -39823441 + MIR SINE MIR 17 191 -71 22 0 0 0 chr4 162506553 162506575 -39821772 + AT_rich Low_complexity Low_complexity 1 22 0 4043 154 63 25 chr4 162506822 162507756 -39820591 - L1PB4 LINE L1 -2 6154 5184 2359 81 0 3 chr4 162508583 162508881 -39819466 + AluSg SINE Alu 3 299 -11 531 274 240 10 chr4 162510146 162510354 -39817993 - MIR SINE MIR -5 257 2 4573 164 22 11 chr4 162511889 162512710 -39815637 - L1MB3 LINE L1 -9 6174 5345 32 26 0 0 chr4 162514145 162514184 -39814163 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr4 162515828 162515858 -39812489 + AT_rich Low_complexity Low_complexity 1 30 0 25 83 0 0 chr4 162516080 162516140 -39812207 + AT_rich Low_complexity Low_complexity 1 60 0 31 58 0 0 chr4 162516314 162516366 -39811981 + AT_rich Low_complexity Low_complexity 1 52 0 906 181 7 0 chr4 162516909 162517064 -39811283 + FRAM SINE Alu 1 156 -20 437 237 40 46 chr4 162517403 162517555 -39810792 + MER104 DNA Tc2 4 154 -26 1937 141 3 13 chr4 162517565 162517869 -39810478 - AluJb SINE Alu -10 302 2 180 111 0 0 chr4 162518343 162518370 -39809977 + (TAAAAA)n Simple_repeat Simple_repeat 3 29 0 870 174 45 45 chr4 162518429 162518607 -39809740 - MER58A DNA MER1_type 0 224 47 226 267 57 0 chr4 162518614 162518719 -39809628 - L1MC/D LINE L1 -2078 5730 5620 1775 123 36 43 chr4 162518818 162519120 -39809227 - AluSx SINE Alu -12 300 1 443 270 55 68 chr4 162519206 162519443 -39808904 - MIR SINE MIR -21 241 8 21 0 0 0 chr4 162519602 162519623 -39808724 + AT_rich Low_complexity Low_complexity 1 21 0 403 267 110 7 chr4 162520669 162520815 -39807532 - L1ME LINE L1 -414 5707 5547 500 250 28 21 chr4 162523067 162523211 -39805136 - L2 LINE L2 0 3313 3169 666 276 70 11 chr4 162523278 162523463 -39804884 - MIR SINE MIR -38 224 29 844 215 204 4 chr4 162523976 162524236 -39804111 + MER46C DNA MER2_type 2 313 -25 190 323 46 0 chr4 162524626 162524691 -39803656 - L2 LINE L2 -49 3223 3156 423 173 173 27 chr4 162524771 162524881 -39803466 - L2 LINE L2 0 3313 3188 366 299 10 0 chr4 162527111 162527208 -39801139 - L2 LINE L2 -20 3293 3196 379 230 304 19 chr4 162527208 162527369 -39800978 + MIR SINE MIR 2 208 -54 5811 47 11 4 chr4 162529309 162530035 -39798312 - L1PA6 LINE L1 -7 6147 5417 190 275 72 14 chr4 162530063 162530132 -39798215 + MIR SINE MIR 88 160 -102 481 221 15 38 chr4 162530602 162530733 -39797614 - L2 LINE L2 -13 3300 3173 818 338 103 39 chr4 162530793 162531433 -39796914 + L2 LINE L2 2217 2897 -417 740 196 82 26 chr4 162532697 162532891 -39795456 + MIR SINE MIR 33 237 -25 180 418 71 7 chr4 162533158 162533299 -39795048 + L2 LINE L2 3116 3265 -7 1973 115 0 59 chr4 162533741 162534063 -39794284 - AluSg1 SINE Alu -6 303 1 2084 106 34 0 chr4 162534603 162534895 -39793452 - AluSx SINE Alu -7 305 4 22 35 0 0 chr4 162535263 162535292 -39793055 + AT_rich Low_complexity Low_complexity 1 29 0 220 273 193 23 chr4 162535447 162535535 -39792812 + L2 LINE L2 3169 3271 -1 47 0 0 0 chr4 162535731 162535778 -39792569 + AT_rich Low_complexity Low_complexity 1 47 0 847 103 0 0 chr4 162536813 162536929 -39791418 - AluSp/q SINE Alu -15 298 183 266 0 0 29 chr4 162536943 162536978 -39791369 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1644 176 48 7 chr4 162536984 162537273 -39791074 - AluJo SINE Alu -11 301 1 230 244 109 0 chr4 162537668 162537759 -39790588 + MIR SINE MIR 34 142 -66 323 355 106 14 chr4 162537759 162537976 -39790371 - MIR SINE MIR -4 258 22 200 283 0 0 chr4 162538763 162538816 -39789531 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 2128 129 0 0 chr4 162538970 162539272 -39789075 + AluSx SINE Alu 1 302 -10 25 0 0 0 chr4 162539284 162539309 -39789038 + AT_rich Low_complexity Low_complexity 1 25 0 250 240 0 0 chr4 162539680 162539730 -39788617 + L2 LINE L2 3264 3313 0 25 0 0 0 chr4 162541293 162541318 -39787029 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr4 162544661 162544687 -39783660 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr4 162545040 162545076 -39783271 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr4 162546330 162546353 -39781994 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 162548065 162548086 -39780261 + AT_rich Low_complexity Low_complexity 1 21 0 181 233 93 0 chr4 162548760 162548803 -39779544 - MIR3 SINE MIR -41 167 121 263 246 0 15 chr4 162549443 162549508 -39778839 + CT-rich Low_complexity Low_complexity 3 66 0 1763 189 43 8 chr4 162549711 162550082 -39778265 + L1MB7 LINE L1 5801 6184 0 25 51 0 0 chr4 162550558 162550597 -39777750 + AT_rich Low_complexity Low_complexity 1 39 0 551 233 161 44 chr4 162550948 162551128 -39777219 + MER20 DNA MER1_type 6 206 -13 239 105 53 0 chr4 162552005 162552043 -39776304 - HsTC2 DNA Tc2 -1830 68 29 232 286 51 31 chr4 162553206 162553304 -39775043 + MIR SINE MIR 89 188 -74 628 326 125 6 chr4 162553651 162553964 -39774383 + L3 LINE CR1 1158 1507 -70 203 301 219 8 chr4 162554588 162554711 -39773636 - MIR3 SINE MIR -54 154 6 203 268 0 0 chr4 162554740 162554781 -39773566 + (CA)n Simple_repeat Simple_repeat 1 41 0 1509 284 228 8 chr4 162554997 162555843 -39772504 - L2 LINE L2 0 3313 2245 1544 201 10 7 chr4 162555984 162556288 -39772059 - AluY SINE Alu -6 305 1 35 41 0 0 chr4 162556383 162556432 -39771915 + AT_rich Low_complexity Low_complexity 1 49 0 251 319 168 8 chr4 162556548 162556667 -39771680 - L2 LINE L2 -932 2382 2245 2266 89 10 7 chr4 162556809 162557112 -39771235 - AluY SINE Alu -7 304 1 1713 151 70 3 chr4 162557464 162557748 -39770599 - AluJo SINE Alu -9 303 1 1442 201 58 0 chr4 162610187 162610481 -39717866 - AluJo SINE Alu -1 311 1 263 189 68 0 chr4 162611477 162611551 -39716796 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 361 200 48 56 chr4 162612703 162612828 -39715519 + L1ME2 LINE L1 6041 6164 0 474 207 25 41 chr4 162614304 162614425 -39713922 + MIR3 SINE MIR 83 201 -7 2052 165 32 6 chr4 162614525 162614871 -39713476 - MLT1A1 LTR MaLR 0 365 11 986 200 6 6 chr4 162614999 162615177 -39713170 - MLT1E1 LTR MaLR 0 654 477 1681 198 37 0 chr4 162615177 162615500 -39712847 + MLT1A1 LTR MaLR 1 335 -30 * 1866 172 94 28 chr4 162615499 162615958 -39712389 + LTR54B LTR ERV1 8 496 -2 942 195 147 107 chr4 162615994 162616074 -39712273 - MLT1E1 LTR MaLR -174 480 405 2295 89 10 10 chr4 162616074 162616376 -39711971 + AluY SINE Alu 1 302 -9 942 195 147 107 chr4 162616376 162616670 -39711677 - MLT1E1 LTR MaLR -249 405 91 290 242 32 0 chr4 162616775 162616837 -39711510 - MLT1E1 LTR MaLR -568 86 23 2032 134 3 3 chr4 162617095 162617385 -39710962 + AluSg SINE Alu 1 290 -20 394 198 19 19 chr4 162617482 162617588 -39710759 - Charlie8 DNA MER1_type -2250 167 62 1630 133 15 80 chr4 162617604 162617941 -39710406 + L1MC1 LINE L1 6013 6327 -6 21 36 0 0 chr4 162617949 162617977 -39710370 + AT_rich Low_complexity Low_complexity 1 28 0 2196 126 3 24 chr4 162619933 162620267 -39708080 - MER2 DNA MER2_type -16 329 3 1674 162 48 59 chr4 162621064 162621435 -39706912 - MLT1A2 LTR MaLR 0 374 8 1672 176 13 31 chr4 162622416 162622734 -39705613 + AluJo SINE Alu 1 312 0 293 118 20 0 chr4 162622737 162622788 -39705559 + GA-rich Low_complexity Low_complexity 2 53 0 298 207 112 2 chr4 162622855 162622950 -39705397 + MIR SINE MIR 28 132 -76 2398 98 3 3 chr4 162623916 162624222 -39704125 + AluSq SINE Alu 1 306 -7 237 226 7 0 chr4 162625284 162625348 -39702999 + MIR SINE MIR 50 113 -96 234 272 7 110 chr4 162625348 162625392 -39702955 - MLT1L LTR MaLR -2 613 566 2002 157 3 6 chr4 162625392 162625705 -39702642 + AluJb SINE Alu 1 312 0 234 272 7 110 chr4 162625705 162625796 -39702551 - MLT1L LTR MaLR -49 566 492 254 234 31 55 chr4 162626434 162626575 -39701772 + L1M4 LINE L1 4205 4341 -1805 2602 46 3 0 chr4 162626959 162627261 -39701086 - AluY SINE Alu -8 303 1 2150 102 7 10 chr4 162627982 162628275 -39700072 - AluSg SINE Alu -18 292 1 531 272 19 19 chr4 162629725 162629883 -39698464 + MIR SINE MIR 35 192 -70 1436 183 106 32 chr4 162631314 162631653 -39696694 + MLT1A2 LTR MaLR 11 374 0 801 157 54 14 chr4 162632105 162632272 -39696075 - AluSg/x SINE Alu 0 300 128 234 299 21 21 chr4 162632479 162632576 -39695771 + Charlie1 DNA MER1_type 2348 2444 -317 27 0 0 0 chr4 162632667 162632694 -39695653 + AT_rich Low_complexity Low_complexity 1 27 0 834 237 121 0 chr4 162632739 162632954 -39695393 - MLT1L LTR MaLR -22 593 353 228 270 14 14 chr4 162633139 162633213 -39695134 - MLT1L LTR MaLR -536 79 6 381 311 6 54 chr4 162633493 162633660 -39694687 + MER5A DNA MER1_type 4 162 -27 2497 148 24 37 chr4 162634572 162634809 -39693538 - MER39 LTR ERV1 -3 704 465 2788 91 0 0 chr4 162634809 162635162 -39693185 + THE1A LTR MaLR 3 355 0 11725 98 11 1 chr4 162635163 162636725 -39691622 + THE1A-int LTR MaLR 2 1580 0 2559 116 3 0 chr4 162636725 162637079 -39691268 + THE1A LTR MaLR 1 355 0 2497 148 24 37 chr4 162637079 162637396 -39690951 - MER39 LTR ERV1 -240 467 1 886 157 14 7 chr4 162637779 162637919 -39690428 - FRAM SINE Alu -15 161 21 14095 68 1 0 chr4 162637947 162640532 -39687815 - L1PA6 LINE L1 0 6154 3569 820 251 46 39 chr4 162640692 162640833 -39687514 + L1ME1 LINE L1 5825 5964 -202 234 0 0 0 chr4 162640833 162640859 -39687488 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 820 251 46 39 chr4 162640859 162641024 -39687323 + L1ME1 LINE L1 5964 6133 -33 475 293 13 0 chr4 162640906 162641056 -39687291 + L1MA10 LINE L1 6174 6325 -9 * 4412 21 0 0 chr4 162641161 162641981 -39686366 - L1P1 LINE L1 -405 5750 4931 1058 118 80 32 chr4 162642904 162643036 -39685311 + MLT2B1 LTR ERVL 325 470 -50 222 37 0 0 chr4 162643036 162643063 -39685284 + (TG)n Simple_repeat Simple_repeat 2 28 0 1058 118 80 32 chr4 162643063 162643117 -39685230 + MLT2B1 LTR ERVL 470 520 0 393 171 149 110 chr4 162643512 162643647 -39684700 - HAL1 LINE L1 -3 2504 2355 2390 88 10 0 chr4 162643647 162643944 -39684403 - AluY SINE Alu -11 300 1 393 171 149 110 chr4 162643944 162644036 -39684311 - HAL1 LINE L1 -152 2355 2268 * 2419 285 104 53 chr4 162644003 162645468 -39682879 - HAL1 LINE L1 -695 1812 272 498 249 57 19 chr4 162645591 162645800 -39682547 + HAL1 LINE L1 1068 1284 -1223 2705 102 3 3 chr4 162646474 162646836 -39681511 + THE1B LTR MaLR 3 364 0 337 222 56 21 chr4 162648100 162648244 -39680103 - L1ME4a LINE L1 -11 6110 5962 204 236 0 69 chr4 162648299 162648371 -39679976 - MIR SINE MIR -39 223 157 270 128 0 0 chr4 162648376 162648415 -39679932 + (TCCC)n Simple_repeat Simple_repeat 2 40 0 2056 127 23 7 chr4 162648415 162648901 -39679446 - AluSq SINE Alu 0 491 1 524 279 12 19 chr4 162648901 162649062 -39679285 - MIR SINE MIR -97 165 6 254 179 18 0 chr4 162649650 162649706 -39678641 + CT-rich Low_complexity Low_complexity 4 60 0 209 206 0 0 chr4 162650158 162650192 -39678155 + MIR SINE MIR 41 74 -134 460 308 64 46 chr4 162650659 162651097 -39677250 + L1ME LINE L1 4733 5178 -968 582 325 26 5 chr4 162651169 162651451 -39676896 + L1ME LINE L1 5272 5555 -609 261 83 0 0 chr4 162651552 162651588 -39676759 + (TG)n Simple_repeat Simple_repeat 1 36 0 219 69 0 0 chr4 162654498 162654527 -39673820 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 181 284 45 37 chr4 162654686 162654820 -39673527 + L3 LINE CR1 739 873 -704 654 274 22 6 chr4 162654893 162655120 -39673227 + MIR SINE MIR 9 247 -15 2030 119 28 3 chr4 162655933 162656218 -39672129 - AluSg SINE Alu -18 292 1 239 0 0 31 chr4 162656666 162656698 -39671649 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 1699 169 43 7 chr4 162656723 162657024 -39671323 - AluJo SINE Alu 0 312 1 294 364 35 6 chr4 162657025 162657198 -39671149 + L3 LINE CR1 427 604 -973 217 267 100 22 chr4 162657364 162657454 -39670893 - MIR SINE MIR -146 116 20 385 288 144 13 chr4 162657488 162657717 -39670630 + L3 LINE CR1 713 971 -606 191 295 48 19 chr4 162658049 162658154 -39670193 + L3 LINE CR1 1166 1273 -304 521 308 72 36 chr4 162658182 162658332 -39670015 + MER112 DNA MER1_type 1 144 -116 444 37 0 0 chr4 162658332 162658386 -39669961 + (CTATT)n Simple_repeat Simple_repeat 4 57 0 2297 88 3 3 chr4 162658387 162658682 -39669665 - AluY SINE Alu -16 295 1 227 31 31 0 chr4 162658683 162658715 -39669632 + (CTATT)n Simple_repeat Simple_repeat 5 37 0 521 308 72 36 chr4 162658715 162658810 -39669537 + MER112 DNA MER1_type 143 259 -1 422 395 12 0 chr4 162658816 162659059 -39669288 + L3 LINE CR1 1317 1562 -15 600 174 73 0 chr4 162659161 162659329 -39669018 - FLAM_A SINE Alu 0 176 1 279 350 79 14 chr4 162659358 162659498 -39668849 - L2 LINE L2 0 3313 3165 * 344 258 204 45 chr4 162659486 162659800 -39668547 - L2 LINE L2 -8 3305 2942 485 208 8 17 chr4 162660438 162660558 -39667789 - MIR SINE MIR -17 245 127 1303 196 32 92 chr4 162660860 162661026 -39667321 - MER58B DNA MER1_type -2094 326 190 2014 151 0 0 chr4 162661026 162661317 -39667030 - AluSx SINE Alu -21 291 1 1303 196 32 92 chr4 162661317 162661497 -39666850 - MER58B DNA MER1_type -2230 190 1 194 264 115 11 chr4 162661920 162662007 -39666340 - MIR SINE MIR -40 222 127 660 221 65 20 chr4 162663108 162663336 -39665011 + L1ME3A LINE L1 5647 5889 -281 207 380 8 16 chr4 162663729 162663850 -39664497 + MIR SINE MIR 20 139 -69 292 280 47 37 chr4 162664191 162664298 -39664049 - L1MC5 LINE L1 -99 7862 7755 1884 140 60 32 chr4 162664310 162664339 -39664008 - MLT2C2 LTR ERVL -4 393 366 309 26 0 0 chr4 162664339 162664377 -39663970 + (TC)n Simple_repeat Simple_repeat 2 39 0 1884 140 60 32 chr4 162664377 162664633 -39663714 - MLT2C2 LTR ERVL -31 366 104 2165 155 8 8 chr4 162664633 162664988 -39663359 - THE1A LTR MaLR 0 355 1 1884 140 60 32 chr4 162664988 162665095 -39663252 - MLT2C2 LTR ERVL -293 104 1 927 174 53 124 chr4 162665099 162665552 -39662795 - L1MC5 LINE L1 -214 7747 7327 1800 216 27 29 chr4 162665783 162666232 -39662115 - MER39 LTR ERV1 0 707 260 251 293 28 19 chr4 162666463 162666569 -39661778 + MIR SINE MIR 156 262 0 189 0 0 0 chr4 162666673 162666694 -39661653 + (CA)n Simple_repeat Simple_repeat 2 22 0 635 165 119 28 chr4 162667486 162667662 -39660685 - L1ME4a LINE L1 -3 6118 5927 251 28 28 0 chr4 162668145 162668181 -39660166 + (TG)n Simple_repeat Simple_repeat 1 37 0 404 286 113 11 chr4 162668646 162668831 -39659516 - L3 LINE CR1 -26 1551 1348 340 359 32 5 chr4 162669105 162669322 -39659025 - MIR SINE MIR -20 242 20 2140 98 33 0 chr4 162671169 162671468 -39656879 + AluSx SINE Alu 1 308 0 182 279 15 29 chr4 162671472 162671540 -39656807 - L2 LINE L2 -93 3220 3154 1435 146 4 20 chr4 162672097 162672351 -39655996 + AluSx SINE Alu 60 309 -3 2284 131 0 0 chr4 162673603 162673915 -39654432 - AluSx SINE Alu 0 312 1 216 256 70 23 chr4 162673916 162674002 -39654345 + MIR SINE MIR 102 191 -71 2132 167 8 28 chr4 162674876 162675032 -39653315 - MLT1B LTR MaLR -4 386 228 2391 132 25 0 chr4 162675032 162675387 -39652960 - THE1B LTR MaLR 0 364 1 2132 167 8 28 chr4 162675387 162675620 -39652727 - MLT1B LTR MaLR -162 228 5 1198 201 0 0 chr4 162675972 162676181 -39652166 + MER3 DNA MER1_type 1 209 0 2403 101 0 0 chr4 162678427 162678735 -39649612 - AluSx SINE Alu -4 308 1 29 60 0 0 chr4 162681945 162681995 -39646352 + AT_rich Low_complexity Low_complexity 1 50 0 321 296 111 22 chr4 162681995 162682130 -39646217 + MER5A DNA MER1_type 43 189 0 316 357 7 21 chr4 162682369 162682512 -39645835 + MIR3 SINE MIR 17 157 -51 230 106 21 0 chr4 162682513 162682560 -39645787 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 438 148 30 10 chr4 162682706 162682807 -39645540 + GA-rich Low_complexity Low_complexity 2 104 0 1932 121 3 21 chr4 162683542 162683824 -39644523 + AluSx SINE Alu 1 277 -35 180 0 0 0 chr4 162684013 162684033 -39644314 + (A)n Simple_repeat Simple_repeat 1 20 0 792 183 89 89 chr4 162684045 162684269 -39644078 - MLT1B LTR MaLR -2 388 165 212 167 24 48 chr4 162684269 162684353 -39643994 + CT-rich Low_complexity Low_complexity 6 87 0 977 144 0 55 chr4 162684353 162684534 -39643813 - MLT1B LTR MaLR -219 171 1 1320 227 218 14 chr4 162685629 162686286 -39642061 - LTR50 LTR ERVL -3 792 2 376 282 85 2 chr4 162686528 162686718 -39641629 + MIR SINE MIR 13 262 0 427 237 38 23 chr4 162687617 162687748 -39640599 + MER103 DNA DNA 20 152 -14 219 257 30 20 chr4 162688608 162688709 -39639638 + A-rich Low_complexity Low_complexity 3 104 0 302 311 39 39 chr4 162689153 162689333 -39639014 - MIR SINE MIR -69 193 14 2023 106 63 3 chr4 162690974 162691258 -39637089 + AluSx SINE Alu 1 301 -11 745 181 5 103 chr4 162691569 162691773 -39636574 + MER3 DNA MER1_type 19 202 -7 817 249 231 42 chr4 162691795 162692293 -39636054 - MLT1L LTR MaLR -5 610 19 183 80 0 0 chr4 162692625 162692650 -39635697 + (TC)n Simple_repeat Simple_repeat 2 26 0 209 195 24 0 chr4 162694513 162694554 -39633793 + CT-rich Low_complexity Low_complexity 5 46 0 182 253 162 10 chr4 162695266 162695365 -39632982 + L2 LINE L2 3198 3311 -2 2185 120 10 7 chr4 162695522 162695822 -39632525 - AluSq SINE Alu -12 301 1 215 344 93 57 chr4 162695986 162696320 -39632027 + L2 LINE L2 2920 3265 -7 252 159 0 0 chr4 162696368 162696412 -39631935 + MER91 DNA MER1_type 1 44 -96 439 219 0 10 chr4 162697148 162697244 -39631103 + L2 LINE L2 3214 3308 -5 2057 138 0 7 chr4 162697682 162697986 -39630361 - AluSx SINE Alu -10 302 1 22 0 0 0 chr4 162698064 162698086 -39630261 + AT_rich Low_complexity Low_complexity 1 22 0 841 243 126 47 chr4 162698132 162698390 -39629957 + L1ME4a LINE L1 5660 5967 -154 281 26 0 26 chr4 162698390 162698429 -39629918 + (TA)n Simple_repeat Simple_repeat 2 39 0 841 243 126 47 chr4 162698429 162698598 -39629749 + L1ME4a LINE L1 5967 6121 0 1638 192 7 3 chr4 162700089 162700386 -39627961 + 7SLRNA srpRNA srpRNA 1 298 -22 738 280 82 55 chr4 162700785 162700945 -39627402 - L1M4 LINE L1 -3131 3015 2861 1729 11 5 0 chr4 162700945 162701135 -39627212 - AluYb8 SINE Alu -6 312 122 738 280 82 55 chr4 162701135 162701857 -39626490 - L1M4 LINE L1 -3285 2861 2110 21 0 0 0 chr4 162701918 162701939 -39626408 + AT_rich Low_complexity Low_complexity 1 21 0 4936 171 41 35 chr4 162702246 162703198 -39625149 - L1MA9 LINE L1 -6 6306 5361 228 35 0 0 chr4 162703198 162703227 -39625120 + (TG)n Simple_repeat Simple_repeat 2 30 0 4936 171 41 35 chr4 162703227 162704166 -39624181 - L1MA9 LINE L1 -951 5361 4397 185 275 33 44 chr4 162704300 162704391 -39623956 - L2 LINE L2 -762 2552 2463 25 0 0 0 chr4 162704631 162704656 -39623691 + AT_rich Low_complexity Low_complexity 1 25 0 481 308 78 40 chr4 162704656 162705104 -39623243 - L2 LINE L2 -15 3298 2834 21 0 0 0 chr4 162705802 162705823 -39622524 + GC_rich Low_complexity Low_complexity 1 21 0 333 248 10 20 chr4 162705861 162705962 -39622385 + MIR SINE MIR 52 151 -57 182 211 35 35 chr4 162706221 162706278 -39622069 + MIR3 SINE MIR 152 208 0 275 335 47 24 chr4 162706827 162706997 -39621350 + L2 LINE L2 2890 3063 -209 403 284 52 13 chr4 162707396 162707551 -39620796 - L2 LINE L2 -46 3267 3107 2115 248 80 9 chr4 162707556 162708290 -39620057 - L2 LINE L2 -495 2819 2034 21 0 0 0 chr4 162708476 162708497 -39619850 + AT_rich Low_complexity Low_complexity 1 21 0 364 103 15 29 chr4 162709085 162709153 -39619194 - MER33 DNA MER1_type -22 341 275 316 118 20 0 chr4 162709189 162709240 -39619107 + U2 snRNA snRNA 1 52 -136 6218 203 56 29 chr4 162709240 162710872 -39617475 + L1MC1 LINE L1 2131 3836 -2590 1021 33 0 0 chr4 162710872 162710993 -39617354 + L1PA4 LINE L1 6032 6152 -3 6218 203 56 29 chr4 162710993 162711452 -39616895 + L1MC1 LINE L1 3836 4281 -2145 3769 163 11 16 chr4 162711462 162712418 -39615929 + L1MC1 LINE L1 5170 6114 -499 932 157 0 0 chr4 162712424 162712564 -39615783 + FRAM SINE Alu 6 145 -31 2442 164 41 21 chr4 162712564 162713076 -39615271 + L1MC1 LINE L1 6092 6613 0 258 163 0 61 chr4 162713078 162713176 -39615171 - MER33 DNA MER1_type -80 244 153 906 179 25 0 chr4 162713181 162713343 -39615004 - FRAM SINE Alu -2 174 9 647 186 25 0 chr4 162713343 162713461 -39614886 - MER33 DNA MER1_type -203 121 1 209 265 157 12 chr4 162713469 162713552 -39614795 - MIR SINE MIR -84 124 30 326 269 34 80 chr4 162713697 162713872 -39614475 - MER5A DNA MER1_type -19 170 4 2144 89 36 4 chr4 162713956 162714237 -39614110 - AluY SINE Alu -21 290 1 194 264 160 0 chr4 162714352 162714458 -39613889 + L2 LINE L2 3150 3272 0 2325 96 3 0 chr4 162714705 162715006 -39613341 + AluSg SINE Alu 1 302 -8 219 224 52 0 chr4 162715308 162715366 -39612981 + (CACCAT)n Simple_repeat Simple_repeat 1 61 0 249 204 37 0 chr4 162716139 162716193 -39612154 + L2 LINE L2 3258 3313 0 806 135 0 45 chr4 162717298 162717431 -39610916 - FLAM_C SINE Alu -16 127 1 215 152 87 0 chr4 162719512 162719558 -39608789 + GA-rich Low_complexity Low_complexity 3 52 0 1203 260 121 32 chr4 162722490 162723136 -39605211 - L1MC4a LINE L1 -1849 5959 5257 194 208 91 39 chr4 162724365 162724442 -39603905 - MIR SINE MIR -61 147 67 642 283 143 22 chr4 162724456 162724686 -39603661 + MIR SINE MIR 1 258 -4 879 263 47 15 chr4 162726045 162726182 -39602165 - L1MA9 LINE L1 -15 6297 6166 288 53 0 0 chr4 162726182 162726220 -39602127 + (TG)n Simple_repeat Simple_repeat 1 38 0 879 263 47 15 chr4 162726220 162726356 -39601991 - L1MA9 LINE L1 -146 6166 6015 2709 216 84 108 chr4 162726509 162726830 -39601517 - L1MC5 LINE L1 -46 7915 7588 1737 200 0 0 chr4 162726830 162727125 -39601222 - AluJo SINE Alu -17 295 1 2709 216 84 108 chr4 162727125 162727229 -39601118 - L1MC5 LINE L1 -373 7588 7483 2388 47 37 3 chr4 162727229 162727525 -39600822 + AluY SINE Alu 1 306 -5 2709 216 84 108 chr4 162727525 162728431 -39599916 - L1MC5 LINE L1 -478 7483 6615 375 107 0 53 chr4 162728446 162728521 -39599826 - L1MC1 LINE L1 0 6333 6263 2324 114 23 38 chr4 162728521 162728947 -39599400 - L1MC/D LINE L1 -718 5615 5197 239 211 0 53 chr4 162728952 162729009 -39599338 - L1MC4a LINE L1 -1212 6596 6543 361 312 50 58 chr4 162729041 162729522 -39598825 - L1MC4a LINE L1 -913 5233 4757 937 214 79 37 chr4 162729714 162729929 -39598418 + MER58A DNA MER1_type 1 224 0 1627 164 79 0 chr4 162729988 162730292 -39598055 - MER45B DNA AcHobo 0 1040 713 511 263 45 37 chr4 162730398 162730728 -39597619 - MER45C DNA AcHobo -172 781 421 842 250 103 0 chr4 162730773 162730977 -39597370 - MER45C DNA AcHobo -728 225 1 1154 105 0 0 chr4 162731124 162731277 -39597070 - AluSg/x SINE Alu -6 306 154 993 98 0 0 chr4 162731377 162731500 -39596847 - AluSq/x SINE Alu -189 123 1 2466 203 38 0 chr4 162731534 162732013 -39596334 - L1MB3 LINE L1 -2 6181 5685 636 192 105 29 chr4 162734644 162734816 -39593531 - LTR67 LTR ERVL 0 557 373 434 223 98 9 chr4 162735078 162735190 -39593157 + L2 LINE L2 3150 3271 -1 387 0 0 0 chr4 162735622 162735665 -39592682 + (TC)n Simple_repeat Simple_repeat 2 44 0 1118 196 33 48 chr4 162735700 162735971 -39592376 + L1PA16 LINE L1 5898 6164 -2 1674 152 0 68 chr4 162736300 162736610 -39591737 + MLT2B2 LTR ERVL 227 515 0 2300 83 0 35 chr4 162736640 162736953 -39591394 + AluY SINE Alu 1 302 -9 198 0 0 0 chr4 162737060 162737082 -39591265 + (TG)n Simple_repeat Simple_repeat 2 23 0 391 245 79 7 chr4 162737208 162737347 -39591000 + L1ME4a LINE L1 5973 6121 0 745 282 50 20 chr4 162738090 162738388 -39589959 + L1ME1 LINE L1 143 449 -5974 3157 249 76 43 chr4 162738520 162738957 -39589390 + L1ME1 LINE L1 674 1095 -5846 1172 203 5 18 chr4 162738957 162739179 -39589168 - MER20 DNA MER1_type 0 219 1 3157 249 76 43 chr4 162739179 162741073 -39587274 + L1ME1 LINE L1 1095 3282 -3659 2666 30 0 3 chr4 162741073 162741374 -39586973 + AluY SINE Alu 1 300 -11 3157 249 76 43 chr4 162741374 162741838 -39586509 + L1ME1 LINE L1 3282 3730 -3211 854 197 14 24 chr4 162741990 162742203 -39586144 + L1PB1 LINE L1 6 216 -6647 * 15307 180 24 19 chr4 162742180 162747576 -39580771 + L1PB1 LINE L1 1392 6867 0 6153 243 68 22 chr4 162747561 162749770 -39578577 + L1ME1 LINE L1 3706 6063 -878 * 1135 208 17 42 chr4 162749770 162750006 -39578341 - MER8 DNA MER2_type 0 239 10 3810 211 41 15 chr4 162750008 162750415 -39577932 + L1ME1 LINE L1 6062 6457 -504 2743 132 21 37 chr4 162750415 162750848 -39577499 - MSTC LTR MaLR -2 426 1 3810 211 41 15 chr4 162750848 162751313 -39577034 + L1ME1 LINE L1 6457 6957 -4 189 121 0 0 chr4 162752916 162752949 -39575398 + (TG)n Simple_repeat Simple_repeat 2 34 0 291 358 48 30 chr4 162753734 162754005 -39574342 - L2 LINE L2 -169 3103 2828 273 203 34 0 chr4 162756177 162756236 -39572111 + LTR67 LTR ERVL 490 550 -7 520 242 175 29 chr4 162756351 162756395 -39571952 - L2 LINE L2 -118 3195 3159 354 23 0 0 chr4 162756395 162756438 -39571909 + (CA)n Simple_repeat Simple_repeat 2 44 0 520 242 175 29 chr4 162756438 162756633 -39571714 - L2 LINE L2 -154 3159 2921 362 170 232 18 chr4 162756649 162756761 -39571586 + L2 LINE L2 3137 3272 0 302 183 14 0 chr4 162757505 162757576 -39570771 + CT-rich Low_complexity Low_complexity 2 73 0 926 272 43 25 chr4 162757994 162758317 -39570030 + L1ME4a LINE L1 5521 5849 -272 302 195 11 0 chr4 162758576 162758663 -39569684 + GA-rich Low_complexity Low_complexity 2 89 0 324 277 40 45 chr4 162758746 162758923 -39569424 + LTR33 LTR ERVL 238 413 -108 333 62 0 0 chr4 162759006 162759054 -39569293 + (TA)n Simple_repeat Simple_repeat 2 49 0 1015 93 0 7 chr4 162759241 162759523 -39568824 + (TA)n Simple_repeat Simple_repeat 1 280 0 21 0 0 0 chr4 162759572 162759593 -39568754 + AT_rich Low_complexity Low_complexity 1 21 0 519 251 32 48 chr4 162759603 162759790 -39568557 + L1ME4a LINE L1 5938 6121 0 584 301 91 0 chr4 162760816 162761035 -39567312 - MIR SINE MIR -3 259 21 214 169 155 42 chr4 162762017 162762088 -39566259 - MER5A DNA MER1_type -109 80 2 * 406 304 35 0 chr4 162762088 162762200 -39566147 + L2 LINE L2 3157 3272 0 210 143 79 32 chr4 162762604 162762667 -39565680 + (CATCT)n Simple_repeat Simple_repeat 1 66 0 186 191 0 0 chr4 162763219 162763266 -39565081 + CT-rich Low_complexity Low_complexity 1 47 0 628 147 37 18 chr4 162764473 162764582 -39563765 - MER53 DNA DNA -78 111 1 1869 188 67 70 chr4 162764905 162765156 -39563191 - MLT1C LTR MaLR -22 445 194 2180 111 10 0 chr4 162765156 162765453 -39562894 - AluSq SINE Alu -13 300 1 1869 188 67 70 chr4 162765453 162765647 -39562700 - MLT1C LTR MaLR -273 194 1 198 0 0 0 chr4 162766395 162766417 -39561930 + (TG)n Simple_repeat Simple_repeat 2 23 0 1738 204 42 11 chr4 162766580 162766957 -39561390 - MLT1B LTR MaLR 0 390 2 243 295 33 16 chr4 162767040 162767162 -39561185 - LTR67 LTR ERVL -1 556 433 23 33 0 0 chr4 162767814 162767844 -39560503 + AT_rich Low_complexity Low_complexity 1 30 0 399 258 21 21 chr4 162767857 162767954 -39560393 + MIR3 SINE MIR 109 205 -3 180 0 0 0 chr4 162768887 162768907 -39559440 + (A)n Simple_repeat Simple_repeat 1 20 0 189 214 0 0 chr4 162769087 162769129 -39559218 + T-rich Low_complexity Low_complexity 1 42 0 457 296 159 40 chr4 162769179 162769530 -39558817 + L2 LINE L2 2268 2660 -654 727 302 54 23 chr4 162769744 162770133 -39558214 + L2 LINE L2 2690 3088 -225 640 267 98 74 chr4 162770194 162770613 -39557734 + LTR16A LTR ERVL 17 445 -5 488 274 19 32 chr4 162770640 162770797 -39557550 + L2 LINE L2 3159 3313 0 26 0 0 0 chr4 162772559 162772585 -39555762 + AT_rich Low_complexity Low_complexity 1 26 0 1582 176 14 3 chr4 162772585 162772874 -39555473 + AluJo SINE Alu 1 292 -20 314 243 48 58 chr4 162772944 162773047 -39555300 - L2 LINE L2 -20 3252 3151 619 199 120 31 chr4 162773144 162773335 -39555012 + LTR50 LTR ERVL 3 210 -585 306 150 0 50 chr4 162773342 162773402 -39554945 + (TTCC)n Simple_repeat Simple_repeat 2 58 0 952 137 0 16 chr4 162773402 162773585 -39554762 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 330 26 0 0 chr4 162773586 162773625 -39554722 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 2017 112 0 0 chr4 162773630 162773898 -39554449 - AluSc SINE Alu -10 299 32 974 235 212 13 chr4 162773972 162774350 -39553997 + LTR50 LTR ERVL 339 791 -4 990 189 113 21 chr4 162774442 162774680 -39553667 + LOR1a LTR ERV1 238 497 0 470 254 94 70 chr4 162774979 162775223 -39553124 + MLT1L LTR MaLR 2 251 -364 332 247 210 32 chr4 162775223 162775409 -39552938 + MIR SINE MIR 31 249 -13 409 200 0 0 chr4 162775534 162775599 -39552748 + AluJ/FLAM SINE Alu 2 66 -246 300 278 28 28 chr4 162775637 162775745 -39552602 + MLT1L LTR MaLR 356 463 -152 2137 159 31 0 chr4 162776635 162776987 -39551360 - MLT1A1 LTR MaLR 0 365 3 991 166 71 33 chr4 162777445 162777656 -39550691 + MER20 DNA MER1_type 1 219 0 182 311 170 19 chr4 162777657 162777763 -39550584 + L2 LINE L2 3190 3311 -2 359 250 207 32 chr4 162778623 162778811 -39549536 + MIR SINE MIR 29 249 -13 1895 128 21 14 chr4 162778935 162779223 -39549124 + AluJo SINE Alu 1 290 -22 938 209 29 19 chr4 162779954 162780160 -39548187 - MER3 DNA MER1_type 0 209 2 2248 100 0 10 chr4 162780483 162780804 -39547543 + AluSg SINE Alu 1 310 0 1206 240 53 75 chr4 162781495 162782233 -39546114 + L2 LINE L2 2555 3313 0 1541 176 46 46 chr4 162782917 162782943 -39545404 - L1MB2 LINE L1 -7 6164 6139 2036 138 7 0 chr4 162782943 162783226 -39545121 + AluSx SINE Alu 1 285 -27 1541 176 46 46 chr4 162783226 162783528 -39544819 - L1MB2 LINE L1 -31 6140 5836 996 239 71 81 chr4 162784038 162784444 -39543903 + MLT1I LTR MaLR 8 409 0 219 133 0 0 chr4 162784871 162784916 -39543431 + (GA)n Simple_repeat Simple_repeat 1 45 0 22 35 0 0 chr4 162785384 162785413 -39542934 + AT_rich Low_complexity Low_complexity 1 29 0 306 0 0 0 chr4 162785483 162785517 -39542830 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 570 264 58 29 chr4 162785632 162785840 -39542507 - MIR SINE MIR -47 215 2 315 200 14 29 chr4 162786548 162786618 -39541729 + Tigger2 DNA MER2_type 1 69 -2649 * 2730 116 53 9 chr4 162786604 162787034 -39541313 + Tigger2 DNA MER2_type 2269 2717 -1 650 90 0 10 chr4 162787824 162787924 -39540423 + (TCTCC)n Simple_repeat Simple_repeat 1 99 0 839 126 0 0 chr4 162787924 162788043 -39540304 - AluSg/x SINE Alu -22 290 172 321 235 15 0 chr4 162788304 162788372 -39539975 + Tigger2 DNA MER2_type 1 69 -2649 233 192 0 19 chr4 162788362 162788414 -39539933 + Tigger2 DNA MER2_type 2273 2323 -395 * 2144 145 68 34 chr4 162789177 162789529 -39538818 - THE1B LTR MaLR 0 364 1 283 257 29 29 chr4 162789673 162789778 -39538569 - MER117 DNA MER1_type -33 164 60 227 171 0 0 chr4 162789888 162789929 -39538418 + L2 LINE L2 3272 3312 -1 280 215 104 56 chr4 162790203 162790347 -39538000 - L1ME4a LINE L1 -28 6093 5943 196 98 0 78 chr4 162790355 162790406 -39537941 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 237 282 26 13 chr4 162790408 162790486 -39537861 - L1ME4a LINE L1 -195 5926 5848 285 299 68 84 chr4 162792001 162792214 -39536133 - MLT1J LTR MaLR -198 313 105 6188 59 4 1 chr4 162792214 162792945 -39535402 - L1PA7 LINE L1 0 6154 5422 285 299 68 84 chr4 162792945 162793039 -39535308 - MLT1J LTR MaLR -406 105 11 * 850 225 80 132 chr4 162793035 162793582 -39534765 - MLT1H1 LTR MaLR -5 550 32 2014 167 9 15 chr4 162793791 162794133 -39534214 - MLT1A1 LTR MaLR -25 340 1 369 0 0 0 chr4 162794544 162794585 -39533762 + (CA)n Simple_repeat Simple_repeat 1 41 0 629 217 33 20 chr4 162796448 162796600 -39531747 - MIR SINE MIR -52 210 57 1255 158 16 40 chr4 162798698 162798945 -39529402 - AluJb SINE Alu -17 295 55 180 264 33 99 chr4 162799091 162799182 -39529165 + L3 LINE CR1 1381 1465 -112 555 273 121 5 chr4 162800078 162800276 -39528071 - MIR SINE MIR -27 235 15 190 343 112 30 chr4 162800670 162800804 -39527543 - L2 LINE L2 -289 2983 2839 759 271 85 56 chr4 162800951 162801257 -39527090 + MLT1J LTR MaLR 3 317 -194 257 349 132 29 chr4 162801945 162802401 -39525946 - L2 LINE L2 -342 2972 2470 234 0 0 0 chr4 162802771 162802797 -39525550 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1257 118 0 6 chr4 162802800 162802970 -39525377 - AluSg/x SINE Alu -25 285 117 683 228 21 21 chr4 162804137 162804326 -39524021 - MER39B LTR ERV1 -39 614 426 1615 96 14 0 chr4 162804428 162804648 -39523699 - AluY SINE Alu -88 223 1 283 287 0 78 chr4 162805164 162805279 -39523068 + MIR SINE MIR 26 131 -77 494 241 49 73 chr4 162805361 162805647 -39522700 - HAL1 LINE L1 0 2507 2229 295 253 40 0 chr4 162805902 162805977 -39522370 - HAL1 LINE L1 -354 2153 2076 1160 287 98 44 chr4 162806236 162807044 -39521303 - HAL1 LINE L1 -603 1904 1052 198 0 0 0 chr4 162807044 162807066 -39521281 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 346 231 149 0 chr4 162807885 162808006 -39520341 - MIR SINE MIR -2 260 122 11529 134 40 19 chr4 162808122 162808904 -39519443 - L1MA8 LINE L1 -4 6287 5522 239 0 0 31 chr4 162808904 162808936 -39519411 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2029 131 3 0 chr4 162808936 162809218 -39519129 - AluSx SINE Alu -29 283 1 11529 134 40 19 chr4 162809218 162811139 -39517208 - L1MA8 LINE L1 -769 5522 3517 485 246 14 51 chr4 162811139 162811277 -39517070 - FLAM_C SINE Alu 0 133 1 11529 134 40 19 chr4 162811277 162811511 -39516836 - L1MA8 LINE L1 -2774 3517 3289 359 243 227 56 chr4 162811504 162811567 -39516780 - HAL1 LINE L1 -1465 1042 991 * 688 197 7 29 chr4 162811567 162811704 -39516643 - MER94 DNA DNA 0 134 1 359 243 227 56 chr4 162811704 162811891 -39516456 - HAL1 LINE L1 -1516 991 749 333 313 177 62 chr4 162811999 162812389 -39515958 - HAL1 LINE L1 -2026 481 47 794 253 191 62 chr4 162812484 162812935 -39515412 + MLT1J LTR MaLR 3 511 0 33 73 0 0 chr4 162813133 162813201 -39515146 + AT_rich Low_complexity Low_complexity 1 68 0 25 31 0 0 chr4 162813221 162813253 -39515094 + AT_rich Low_complexity Low_complexity 1 32 0 215 187 58 53 chr4 162813255 162813426 -39514921 + (TA)n Simple_repeat Simple_repeat 2 173 0 46 62 0 0 chr4 162813426 162813507 -39514840 + AT_rich Low_complexity Low_complexity 1 81 0 2702 134 13 66 chr4 162813550 162814021 -39514326 - Tigger2 DNA MER2_type 0 2718 2273 347 180 16 0 chr4 162814019 162814080 -39514267 + MER8 DNA MER2_type 178 239 0 * 2321 237 120 14 chr4 162814149 162814888 -39513459 + L1MC4a LINE L1 5255 6072 -1736 568 226 108 38 chr4 162815323 162815509 -39512838 - MIR SINE MIR -29 233 35 2179 120 0 0 chr4 162815554 162815846 -39512501 - AluSx SINE Alu -20 292 1 1655 237 190 20 chr4 162816180 162816834 -39511513 + MER20B DNA MER1_type 5 769 -14 705 212 95 0 chr4 162817031 162817210 -39511137 - MLT2B1 LTR ERVL -324 196 1 366 360 7 0 chr4 162817449 162817585 -39510762 + L2 LINE L2 3122 3258 -14 209 114 29 0 chr4 162817597 162817632 -39510715 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 371 287 18 72 chr4 162817666 162817833 -39510514 + MIR3 SINE MIR 11 168 -40 498 208 180 22 chr4 162818251 162818429 -39509918 + MIR SINE MIR 9 214 -48 22 0 0 0 chr4 162819582 162819604 -39508743 + AT_rich Low_complexity Low_complexity 1 22 0 338 340 52 11 chr4 162819668 162819859 -39508488 + L1MEd LINE L1 895 1093 -5026 875 258 89 65 chr4 162819859 162820452 -39507895 + MLT1H1 LTR MaLR 1 554 -1 836 301 88 15 chr4 162820458 162820908 -39507439 + L1MEd LINE L1 1094 1665 -825 2291 100 0 13 chr4 162820927 162821238 -39507109 + AluSc SINE Alu 1 307 -2 774 259 61 11 chr4 162822761 162823024 -39505323 + L2 LINE L2 3036 3311 -2 1514 173 68 75 chr4 162823086 162823526 -39504821 + LTR54B LTR ERV1 2 438 -60 487 269 90 0 chr4 162825360 162825527 -39502820 + MIR3 SINE MIR 25 206 -2 615 193 53 20 chr4 162825636 162825786 -39502561 - L1ME3A LINE L1 -13 6157 6003 342 0 0 0 chr4 162826138 162826176 -39502171 + (CA)n Simple_repeat Simple_repeat 2 39 0 326 295 31 0 chr4 162826488 162826617 -39501730 - MIR3 SINE MIR -16 192 60 1286 104 0 6 chr4 162827772 162827935 -39500412 + AluSq SINE Alu 1 162 -151 382 219 7 7 chr4 162827941 162828078 -39500269 + (CATG)n Simple_repeat Simple_repeat 4 140 0 1180 142 0 0 chr4 162828097 162828259 -39500088 + AluSg/x SINE Alu 137 298 -12 227 333 21 0 chr4 162828580 162828673 -39499674 + MLT1L LTR MaLR 86 180 -435 719 143 53 0 chr4 162829123 162829256 -39499091 + MER45B DNA AcHobo 713 852 -188 214 309 79 32 chr4 162829274 162829400 -39498947 + MIR SINE MIR 119 250 -12 2145 109 0 0 chr4 162829433 162829716 -39498631 + MER1B DNA MER1_type 52 334 -5 406 265 33 26 chr4 162830192 162830343 -39498004 - L1MC5 LINE L1 -48 7913 7762 281 274 137 73 chr4 162830479 162830603 -39497744 - L2 LINE L2 0 3272 3141 340 328 34 0 chr4 162830966 162831085 -39497262 - LTR67 LTR ERVL -1 556 434 1877 210 68 57 chr4 162831547 162832095 -39496252 + MLT2B3 LTR ERVL 1 554 0 268 301 0 0 chr4 162832116 162832189 -39496158 + L2 LINE L2 2686 2758 -556 306 363 127 12 chr4 162832261 162832583 -39495764 + L2 LINE L2 2914 3272 0 791 265 28 62 chr4 162832603 162832894 -39495453 - LTR16A LTR ERVL -8 442 162 702 109 0 0 chr4 162833001 162833111 -39495236 + (TAGA)n Simple_repeat Simple_repeat 3 112 0 1032 241 47 22 chr4 162833122 162833400 -39494947 - MLT2F LTR ERVL -59 604 320 250 280 20 20 chr4 162833392 162833492 -39494855 - LTR16A1 LTR ERVL -354 103 4 * 615 230 124 0 chr4 162833974 162834135 -39494212 - MER117 DNA MER1_type -16 181 1 196 257 29 57 chr4 162834995 162835065 -39493282 - MIR SINE MIR -102 106 39 432 272 63 73 chr4 162835220 162835285 -39493062 + MER5A DNA MER1_type 1 65 -124 1827 102 4 12 chr4 162835285 162835540 -39492807 + AluSc SINE Alu 44 296 -13 432 272 63 73 chr4 162835540 162835665 -39492682 + MER5A DNA MER1_type 65 189 0 545 275 58 78 chr4 162836115 162836497 -39491850 + MLT1J2 LTR MaLR 77 450 0 641 277 56 0 chr4 162837094 162837308 -39491039 + MIR SINE MIR 14 251 -11 469 314 0 13 chr4 162837644 162837803 -39490544 + MIR SINE MIR 27 183 -79 180 200 0 0 chr4 162838833 162838878 -39489469 + CT-rich Low_complexity Low_complexity 1 45 0 973 156 0 13 chr4 162840823 162840977 -39487370 + FRAM SINE Alu 20 171 -5 594 274 12 18 chr4 162841094 162841258 -39487089 + L2 LINE L2 3110 3272 0 21 0 0 0 chr4 162841319 162841340 -39487007 + AT_rich Low_complexity Low_complexity 1 21 0 1603 84 0 10 chr4 162841497 162841700 -39486647 + AluSg/x SINE Alu 97 297 -13 384 332 27 27 chr4 162842724 162842911 -39485436 - MIR SINE MIR -27 235 49 427 278 61 11 chr4 162843542 162843722 -39484625 - MIR SINE MIR -72 190 2 195 42 0 0 chr4 162844037 162844061 -39484286 + (TA)n Simple_repeat Simple_repeat 2 25 0 217 250 177 0 chr4 162844977 162845073 -39483274 + MIR SINE MIR 19 131 -77 309 225 8 70 chr4 162845264 162845393 -39482954 + MIR SINE MIR 93 213 -49 227 31 31 0 chr4 162845432 162845464 -39482883 + (TTA)n Simple_repeat Simple_repeat 3 35 0 414 328 85 0 chr4 162845552 162845729 -39482618 - MIR SINE MIR -10 252 61 240 100 0 0 chr4 162846162 162846202 -39482145 + (CA)n Simple_repeat Simple_repeat 2 41 0 237 176 56 28 chr4 162846806 162846914 -39481433 + GA-rich Low_complexity Low_complexity 1 111 0 2625 215 86 85 chr4 162846968 162847962 -39480385 - L1MC5 LINE L1 -50 7911 6913 198 0 0 0 chr4 162847962 162847984 -39480363 + (CA)n Simple_repeat Simple_repeat 2 23 0 2625 215 86 85 chr4 162847984 162848217 -39480130 - L1MC5 LINE L1 -1048 6913 6682 401 181 161 47 chr4 162848217 162848366 -39479981 + Charlie7 DNA MER1_type 2446 2611 -1 285 299 29 22 chr4 162848405 162848542 -39479805 + MIR SINE MIR 58 195 -67 317 156 13 0 chr4 162848569 162848646 -39479701 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 424 299 84 23 chr4 162849539 162849753 -39478594 - MIR SINE MIR -24 238 12 779 209 82 36 chr4 162849847 162850067 -39478280 - MIR SINE MIR -31 231 2 1955 134 34 20 chr4 162850067 162850365 -39477982 + AluSx SINE Alu 1 302 -10 24 0 0 0 chr4 162850733 162850757 -39477590 + AT_rich Low_complexity Low_complexity 1 24 0 218 256 89 67 chr4 162851216 162851306 -39477041 - MIR3 SINE MIR -20 188 97 501 322 29 5 chr4 162851431 162851636 -39476711 - MIR SINE MIR -28 234 25 208 158 0 0 chr4 162852353 162852391 -39475956 - MIR SINE MIR -83 125 88 331 347 111 19 chr4 162852578 162852794 -39475553 - MIR SINE MIR -11 251 16 2389 107 0 0 chr4 162853226 162853525 -39474822 - AluSx SINE Alu -13 299 1 349 271 111 40 chr4 162853887 162854086 -39474261 + MIR SINE MIR 16 228 -34 221 175 0 0 chr4 162854345 162854385 -39473962 + A-rich Low_complexity Low_complexity 3 42 0 1277 234 68 37 chr4 162854535 162854945 -39473402 - MLT1J1 LTR MaLR -5 441 19 450 218 109 67 chr4 162855674 162855735 -39472612 + MER112 DNA MER1_type 9 66 -194 195 42 0 0 chr4 162855735 162855759 -39472588 + (CA)n Simple_repeat Simple_repeat 1 24 0 450 218 109 67 chr4 162855759 162855809 -39472538 + MER112 DNA MER1_type 66 112 -148 2162 103 0 26 chr4 162855809 162856111 -39472236 + AluSg SINE Alu 1 294 -16 450 218 109 67 chr4 162856111 162856191 -39472156 + MER112 DNA MER1_type 112 209 -51 1125 101 0 0 chr4 162856367 162856505 -39471842 - AluSq/x SINE Alu -175 138 1 385 311 115 31 chr4 162857081 162857525 -39470822 + L2 LINE L2 1932 2412 -902 1095 272 107 20 chr4 162857529 162858035 -39470312 + L2 LINE L2 2772 3313 0 185 292 102 37 chr4 162858053 162858269 -39470078 + L2 LINE L2 2358 2587 -727 2063 136 52 89 chr4 162858384 162858922 -39469425 + MLT2A2 LTR ERVL 1 554 0 332 297 69 50 chr4 162858963 162859165 -39469182 + L2 LINE L2 2578 2783 -531 257 133 0 0 chr4 162859495 162859540 -39468807 + L2 LINE L2 3269 3313 0 692 323 96 23 chr4 162860209 162860928 -39467419 - L2 LINE L2 0 3313 2538 544 189 70 63 chr4 162861657 162861800 -39466547 + MER20 DNA MER1_type 6 149 -70 288 285 144 71 chr4 162862052 162862463 -39465884 + L2 LINE L2 2829 3269 -3 185 254 15 30 chr4 162862594 162862661 -39465686 + MER5B DNA MER1_type 3 68 -110 5061 174 10 13 chr4 162862693 162864093 -39464254 - L1MB7 LINE L1 -19 6165 4768 277 294 59 22 chr4 162864680 162864816 -39463531 + L2 LINE L2 3127 3267 -5 727 232 133 29 chr4 162865003 162865244 -39463103 - LTR33 LTR ERVL 0 521 256 278 342 66 59 chr4 162865422 162865596 -39462751 - L2 LINE L2 0 3272 3094 2040 164 97 16 chr4 162865596 162866028 -39462319 - MLT1C LTR MaLR 0 467 1 278 342 66 59 chr4 162866028 162866157 -39462190 - L2 LINE L2 -178 3094 2967 206 283 117 0 chr4 162869617 162869677 -39458670 + L2 LINE L2 3206 3272 0 668 0 37 0 chr4 162870379 162870461 -39457886 + (TTTCC)n Simple_repeat Simple_repeat 2 86 0 1786 176 18 0 chr4 162870484 162870768 -39457579 - AluJb SINE Alu -23 289 1 373 271 149 15 chr4 162870768 162870951 -39457396 - MIR SINE MIR -50 212 10 382 299 19 0 chr4 162871478 162871585 -39456762 - L2 LINE L2 -27 3245 3137 1327 215 31 52 chr4 162871656 162872063 -39456284 - MER39 LTR ERV1 -1 706 164 792 190 185 0 chr4 162872056 162872240 -39456107 - MER39 LTR ERV1 -489 218 1 * 297 289 172 51 chr4 162872241 162872805 -39455542 - L2 LINE L2 -352 2962 2331 535 171 0 0 chr4 162874272 162874360 -39453987 + MER31A LTR ERV1 360 447 -38 916 136 0 0 chr4 162874361 162874493 -39453854 - MSTD LTR MaLR 0 396 265 189 147 0 0 chr4 162876095 162876129 -39452218 + (TC)n Simple_repeat Simple_repeat 1 34 0 2134 195 84 113 chr4 162876764 162877513 -39450834 - LTR8A LTR ERV1 0 727 1 340 261 96 65 chr4 162877603 162877665 -39450682 + MIR SINE MIR 48 107 -155 2063 152 6 23 chr4 162877665 162878008 -39450339 - MER1B DNA MER1_type 0 337 1 340 261 96 65 chr4 162878008 162878144 -39450203 + MIR SINE MIR 107 252 -10 408 216 7 101 chr4 162882809 162882948 -39445399 - MIR SINE MIR -67 141 16 373 103 48 8 chr4 162883546 162883674 -39444673 + CT-rich Low_complexity Low_complexity 1 133 0 1155 214 162 44 chr4 162883747 162884154 -39444193 - MLT1J LTR MaLR -56 455 1 548 343 66 19 chr4 162884164 162884528 -39443819 + L3 LINE CR1 477 857 -720 1260 158 29 54 chr4 162884529 162884807 -39443540 + L1MB3 LINE L1 5911 6181 -2 2525 89 0 3 chr4 162884814 162885128 -39443219 + AluSq SINE Alu 1 313 0 181 245 41 0 chr4 162885130 162885179 -39443168 + L3 LINE CR1 842 892 -685 808 213 6 0 chr4 162885907 162886076 -39442271 + MER5B DNA MER1_type 1 170 -8 2248 83 42 3 chr4 162888127 162888416 -39439931 + AluSq SINE Alu 1 300 -13 615 288 156 24 chr4 162888496 162889053 -39439294 + L1MC4a LINE L1 5319 5957 -164 2356 117 0 0 chr4 162889231 162889540 -39438807 + AluSx SINE Alu 1 309 -3 404 86 14 0 chr4 162889540 162889610 -39438737 + (TA)n Simple_repeat Simple_repeat 2 72 0 940 187 6 28 chr4 162889668 162889850 -39438497 + MER74C LTR ERVL 11 188 -272 443 293 145 23 chr4 162890378 162890764 -39437583 + L1MC4a LINE L1 5525 5957 -164 2413 107 0 0 chr4 162890943 162891251 -39437096 + AluSx SINE Alu 1 308 -4 404 86 14 0 chr4 162891251 162891321 -39437026 + (TA)n Simple_repeat Simple_repeat 2 72 0 940 187 6 28 chr4 162891379 162891561 -39436786 + MER74C LTR ERVL 11 188 -272 189 367 61 10 chr4 162892307 162892405 -39435942 + MIR SINE MIR 48 150 -112 2273 117 0 0 chr4 162892711 162893011 -39435336 - AluSx SINE Alu -12 300 1 3285 104 98 8 chr4 162893996 162894476 -39433871 - MER1A DNA MER1_type -6 523 1 554 172 225 71 chr4 162895321 162895362 -39432985 - MER3 DNA MER1_type 0 209 176 2078 122 13 13 chr4 162895362 162895665 -39432682 - AluSx SINE Alu -9 303 1 554 172 225 71 chr4 162895665 162895792 -39432555 - MER3 DNA MER1_type -33 176 15 192 233 0 0 chr4 162896696 162896739 -39431608 + L2 LINE L2 3270 3312 -1 852 254 88 39 chr4 162897350 162897712 -39430635 - MLT1J1 LTR MaLR -2 444 65 278 243 0 27 chr4 162897971 162898045 -39430302 + LTR67 LTR ERVL 485 556 -1 4502 116 31 28 chr4 162898059 162898767 -39429580 + MER50 LTR ERV1 2 711 -23 304 222 56 22 chr4 162898808 162898898 -39429449 - L2 LINE L2 -12 3301 3209 2061 153 20 53 chr4 162901197 162901596 -39426751 + MLT1B LTR MaLR 5 390 0 288 0 0 0 chr4 162903149 162903181 -39425166 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 272 282 27 9 chr4 162903184 162903294 -39425053 - L2 LINE L2 -16 3297 3186 40 49 0 0 chr4 162903786 162903847 -39424500 + AT_rich Low_complexity Low_complexity 1 61 0 377 321 18 0 chr4 162906366 162906478 -39421869 - L2 LINE L2 -469 2845 2732 248 340 0 0 chr4 162906488 162906582 -39421765 - MER103 DNA DNA -62 104 11 303 194 28 14 chr4 162906878 162906950 -39421397 - L1MA6 LINE L1 -9 6291 6219 448 258 76 103 chr4 162906955 162907082 -39421265 - MLT1J1 LTR MaLR -69 377 248 1952 134 50 0 chr4 162907082 162907380 -39420967 - AluSq SINE Alu 0 313 1 448 258 76 103 chr4 162907380 162907582 -39420765 - MLT1J1 LTR MaLR -198 248 57 382 77 0 0 chr4 162909917 162909969 -39418378 - MADE1 DNA Mariner 0 80 29 215 349 0 0 chr4 162910073 162910156 -39418191 - L2 LINE L2 0 3313 3231 354 85 0 0 chr4 162910176 162910223 -39418124 - MADE1 DNA Mariner -30 50 4 227 200 0 0 chr4 162910550 162910590 -39417757 + L2 LINE L2 3255 3294 -19 201 349 0 0 chr4 162910600 162910683 -39417664 + L2 LINE L2 3231 3313 0 2118 138 0 6 chr4 162910921 162911233 -39417114 + AluSx SINE Alu 1 310 -2 500 204 66 31 chr4 162911556 162911752 -39416595 - Charlie7 DNA MER1_type 0 2612 2410 * 1191 251 27 34 chr4 162911737 162912019 -39416328 - Charlie7 DNA MER1_type -1889 723 443 658 186 39 0 chr4 162912019 162912148 -39416199 - MER94 DNA DNA 0 134 1 1191 251 27 34 chr4 162912148 162912279 -39416068 - Charlie7 DNA MER1_type -2169 443 313 285 280 50 10 chr4 162912816 162912916 -39415431 - MIR SINE MIR -71 191 88 3057 137 89 0 chr4 162913083 162913566 -39414781 + MER1A DNA MER1_type 2 527 0 332 283 58 36 chr4 162913987 162914125 -39414222 + MLT1J LTR MaLR 108 248 -263 276 240 31 62 chr4 162914200 162914296 -39414051 + MLT1J2 LTR MaLR 354 446 -4 3485 113 8 2 chr4 162914297 162914791 -39413556 + LOR1a LTR ERV1 1 497 0 213 317 89 32 chr4 162915122 162915245 -39413102 + L3b LINE CR1 1102 1231 -352 25 0 0 0 chr4 162915819 162915844 -39412503 + AT_rich Low_complexity Low_complexity 1 25 0 2256 122 0 3 chr4 162915988 162916299 -39412048 + AluSx SINE Alu 3 312 0 203 150 0 0 chr4 162916381 162916421 -39411926 + MIR SINE MIR 94 133 -129 791 210 140 111 chr4 162916421 162916863 -39411484 + LTR16A1 LTR ERVL 1 455 -2 1700 183 0 7 chr4 162916905 162917200 -39411147 + AluJb SINE Alu 1 293 -19 242 277 10 77 chr4 162917350 162917558 -39410789 - MIR SINE MIR -40 222 36 1892 112 94 4 chr4 162919817 162920094 -39408253 - AluSq SINE Alu -11 302 1 520 132 0 77 chr4 162920253 162920272 -39408075 + 5S rRNA rRNA 1 20 -101 2581 167 14 0 chr4 162920272 162920697 -39407650 - MSTB1 LTR MaLR -1 431 1 520 132 0 77 chr4 162920697 162920768 -39407579 + 5S rRNA rRNA 20 84 -37 666 303 8 42 chr4 162921059 162921320 -39407027 + MIR SINE MIR 8 259 -3 6031 75 11 43 chr4 162921321 162922214 -39406133 + L1MA1 LINE L1 5434 6298 -4 21 0 0 0 chr4 162922214 162922235 -39406112 + AT_rich Low_complexity Low_complexity 1 21 0 196 336 47 0 chr4 162923392 162923499 -39404848 + L2 LINE L2 3156 3267 -5 240 342 33 25 chr4 162923751 162923871 -39404476 + MIR SINE MIR 9 129 -133 2424 97 0 0 chr4 162923997 162924306 -39404041 - AluSx SINE Alu -3 309 1 548 275 25 6 chr4 162926678 162926838 -39401509 - LTR33 LTR ERVL -18 503 341 556 216 177 0 chr4 162926889 162927070 -39401277 - LTR33 LTR ERVL -308 213 1 289 318 84 0 chr4 162927299 162927406 -39400941 + L2 LINE L2 3151 3266 -6 21 0 0 0 chr4 162927970 162927991 -39400356 + AT_rich Low_complexity Low_complexity 1 21 0 275 257 132 28 chr4 162928935 162929223 -39399124 - L1ME4a LINE L1 -38 6083 5766 219 114 0 0 chr4 162930284 162930319 -39398028 + (GAAAA)n Simple_repeat Simple_repeat 5 39 0 333 0 0 0 chr4 162930506 162930543 -39397804 + (CA)n Simple_repeat Simple_repeat 2 38 0 410 282 114 15 chr4 162931834 162931965 -39396382 + MIR SINE MIR 19 162 -100 525 212 44 29 chr4 162932249 162932386 -39395961 - L2 LINE L2 0 3313 3175 231 36 0 0 chr4 162932744 162932772 -39395575 + (CAG)n Simple_repeat Simple_repeat 3 30 0 547 261 83 0 chr4 162933249 162933429 -39394918 - MIR SINE MIR -1 261 67 1846 142 42 60 chr4 162933469 162933849 -39394498 + MLT1B LTR MaLR 18 390 0 253 320 0 20 chr4 162934120 162934220 -39394127 - L2 LINE L2 0 3272 3175 275 250 22 43 chr4 162934523 162934615 -39393732 + GA-rich Low_complexity Low_complexity 2 91 0 190 275 14 14 chr4 162934615 162934684 -39393663 - MIR SINE MIR -6 256 188 307 157 0 0 chr4 162934725 162934776 -39393571 + MER96 DNA MER1_type? 108 158 -17 2921 182 41 4 chr4 162935973 162936511 -39391836 - MLT1F1 LTR MaLR -8 559 2 1963 139 9 22 chr4 162936621 162936937 -39391410 + AluSx SINE Alu 1 312 0 2243 161 14 0 chr4 162937010 162937370 -39390977 - MLT1A1 LTR MaLR 0 365 1 204 97 0 0 chr4 162940096 162940127 -39388220 + (TGGGGG)n Simple_repeat Simple_repeat 6 36 0 5406 180 52 46 chr4 162942377 162942437 -39385910 - Charlie1a DNA MER1_type -1307 1454 1396 2024 222 62 14 chr4 162942437 162942919 -39385428 - MLT1D LTR MaLR 0 505 1 5406 180 52 46 chr4 162942919 162944099 -39384248 - Charlie1a DNA MER1_type -1365 1396 207 2579 128 3 0 chr4 162944102 162944476 -39383871 - THE1C LTR MaLR 0 375 1 10906 102 33 14 chr4 162944476 162946010 -39382337 - THE1C-int LTR MaLR 0 1580 17 2647 120 3 0 chr4 162946027 162946401 -39381946 - THE1C LTR MaLR 0 375 1 1294 154 10 10 chr4 162946401 162946609 -39381738 - Charlie1a DNA MER1_type -1247 208 1 3220 209 12 27 chr4 162946895 162947624 -39380723 - L1ME1 LINE L1 -5 6161 5444 1942 89 41 95 chr4 162947643 162947959 -39380388 + AluSq SINE Alu 1 299 -14 22 35 0 0 chr4 162948113 162948142 -39380205 + AT_rich Low_complexity Low_complexity 1 29 0 1408 241 93 76 chr4 162948888 162948933 -39379414 - MLT1E LTR MaLR -2 591 548 1190 213 175 11 chr4 162948933 162949299 -39379048 + MSTC LTR MaLR 3 428 0 1408 241 93 76 chr4 162949299 162949834 -39378513 - MLT1E LTR MaLR -45 548 1 2828 93 0 0 chr4 162950254 162950618 -39377729 - THE1B LTR MaLR 0 364 1 624 237 81 25 chr4 162950790 162950988 -39377359 + MLT1J2 LTR MaLR 25 233 -217 513 58 0 0 chr4 162951550 162951619 -39376728 + (CA)n Simple_repeat Simple_repeat 2 70 0 203 319 160 0 chr4 162951634 162951753 -39376594 - MIR SINE MIR -84 178 41 562 258 0 0 chr4 162951848 162951976 -39376371 - MER91B DNA MER1_type 0 190 63 226 239 28 42 chr4 162951992 162952063 -39376284 + MER91C DNA MER1_type 57 126 -14 25 0 0 0 chr4 162952206 162952231 -39376116 + AT_rich Low_complexity Low_complexity 1 25 0 1043 95 79 11 chr4 162952645 162952835 -39375512 + L1MA5A LINE L1 6095 6297 0 469 309 25 0 chr4 162953101 162953263 -39375084 + MIR SINE MIR 97 262 0 26 30 0 0 chr4 162953269 162953302 -39375045 + AT_rich Low_complexity Low_complexity 1 33 0 216 190 0 13 chr4 162954033 162954081 -39374266 - MER91B DNA MER1_type -93 47 1 262 156 31 0 chr4 162954845 162954909 -39373438 + (TTATA)n Simple_repeat Simple_repeat 5 70 0 243 319 97 26 chr4 162955682 162955795 -39372552 - L2 LINE L2 -18 3254 3134 591 243 86 40 chr4 162955853 162956075 -39372272 + MIR SINE MIR 18 249 -13 22 0 0 0 chr4 162957592 162957614 -39370733 + AT_rich Low_complexity Low_complexity 1 22 0 189 222 175 0 chr4 162958483 162958546 -39369801 - MIR SINE MIR -125 137 64 922 134 5 98 chr4 162958549 162958743 -39369604 + AluSg/x SINE Alu 137 312 0 417 39 0 0 chr4 162959506 162959557 -39368790 + (CA)n Simple_repeat Simple_repeat 2 52 0 330 192 23 40 chr4 162959573 162959750 -39368597 + GA-rich Low_complexity Low_complexity 1 174 0 2083 115 0 14 chr4 162959910 162960189 -39368158 + AluSx SINE Alu 1 275 -37 197 32 0 32 chr4 162960192 162960223 -39368124 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 2705 168 26 66 chr4 162960228 162960806 -39367541 + LTR9 LTR ERV1 58 612 0 453 248 57 7 chr4 162960880 162960911 -39367436 + MER5B DNA MER1_type 31 59 -119 228 67 0 0 chr4 162960911 162960941 -39367406 + (CCA)n Simple_repeat Simple_repeat 1 30 0 453 248 57 7 chr4 162960941 162961050 -39367297 + MER5B DNA MER1_type 59 178 0 184 288 82 14 chr4 162961050 162961112 -39367235 + L3 LINE CR1 1510 1576 -1 229 88 0 29 chr4 162961154 162961188 -39367159 - MLT2C1 LTR ERVL -158 239 207 227 289 0 41 chr4 162961983 162962080 -39366267 + L2 LINE L2 3209 3301 -12 412 229 252 0 chr4 162962243 162962374 -39365973 + MIR SINE MIR 29 192 -70 973 221 52 24 chr4 162962403 162962616 -39365731 + MER58A DNA MER1_type 6 224 0 795 272 38 93 chr4 162965324 162965916 -39362431 - L2 LINE L2 -4 3309 2740 786 281 38 66 chr4 162965916 162966339 -39362008 + MLT1J LTR MaLR 1 411 -100 714 278 33 59 chr4 162966411 162966717 -39361630 - L2 LINE L2 -574 2740 2443 302 194 54 54 chr4 162966920 162967013 -39361334 - LTR67 LTR ERVL -8 549 457 209 327 108 54 chr4 162967439 162967717 -39360630 - L3b LINE CR1 -29 1554 1262 1355 118 97 8 chr4 162968678 162968915 -39359432 - L1MB4 LINE L1 0 6180 5923 2155 118 0 14 chr4 162968931 162969228 -39359119 - AluSc SINE Alu -15 294 2 292 316 140 0 chr4 162969385 162969556 -39358791 - MIR SINE MIR -65 197 3 499 250 116 82 chr4 162969737 162969969 -39358378 + MIR SINE MIR 2 241 -21 926 200 11 11 chr4 162970019 162970194 -39358153 - FRAM SINE Alu 0 176 2 385 286 95 22 chr4 162970268 162970499 -39357848 - MLT1L LTR MaLR 0 615 368 346 300 64 0 chr4 162971364 162971561 -39356786 + L1MEc LINE L1 1532 1736 -4648 37 23 0 0 chr4 162971934 162971978 -39356369 + AT_rich Low_complexity Low_complexity 1 44 0 437 336 14 19 chr4 162972540 162972754 -39355593 + L1M4 LINE L1 4106 4318 -1828 287 273 55 31 chr4 162972953 162973081 -39355266 + L1ME4a LINE L1 5980 6110 -11 220 229 0 0 chr4 162974569 162974617 -39353730 + MIR SINE MIR 50 97 -165 * 344 290 76 15 chr4 162974616 162974747 -39353600 - MIR SINE MIR -4 258 120 370 285 73 24 chr4 162974786 162974951 -39353396 - LTR16A LTR ERVL -75 375 203 189 0 0 0 chr4 162975489 162975510 -39352837 + (TGGG)n Simple_repeat Simple_repeat 3 23 0 411 337 93 0 chr4 162976306 162976478 -39351869 + MER117 DNA MER1_type 6 193 -4 1772 78 0 13 chr4 162976744 162976975 -39351372 - AluY SINE Alu 0 311 84 5814 157 36 23 chr4 162977115 162979121 -39349226 + L1PA16 LINE L1 4122 6157 -9 3624 111 71 9 chr4 162980649 162981227 -39347120 - MER39B LTR ERV1 -39 614 1 3029 154 68 6 chr4 162981701 162982232 -39346115 - MER45B DNA AcHobo 0 1040 477 704 206 116 0 chr4 162982229 162982384 -39345963 - MER45B DNA AcHobo -798 242 70 * 245 194 37 65 chr4 162982981 162983089 -39345258 + L2 LINE L2 3116 3220 -93 219 276 15 97 chr4 162983145 162983279 -39345068 + MER91B DNA MER1_type 7 129 -61 446 234 11 0 chr4 162983294 162983388 -39344959 + MER91B DNA MER1_type 87 181 -9 273 245 28 19 chr4 162983483 162983589 -39344758 + (TA)n Simple_repeat Simple_repeat 1 107 0 267 103 0 0 chr4 162984476 162984515 -39343832 + (GAAAA)n Simple_repeat Simple_repeat 3 41 0 238 309 11 83 chr4 162984567 162984748 -39343599 - MIR SINE MIR -24 238 71 857 173 68 120 chr4 162985279 162985312 -39343035 + LTR49 LTR ERV1 1 34 -561 2018 123 30 20 chr4 162985312 162985612 -39342735 - AluSx SINE Alu -9 303 1 857 173 68 120 chr4 162985612 162986208 -39342139 + LTR49 LTR ERV1 34 564 -31 1611 169 46 18 chr4 162986424 162986708 -39341639 + AluJo SINE Alu 1 292 -20 22 0 0 0 chr4 162986708 162986730 -39341617 + AT_rich Low_complexity Low_complexity 1 22 0 1827 240 69 27 chr4 162986897 162987422 -39340925 + LTR38 LTR ERV1 1 547 -9 334 256 22 33 chr4 162987576 162987666 -39340681 + L1M3de LINE L1 1111 1199 -6287 268 333 0 42 chr4 162987682 162987778 -39340569 + L1M3de LINE L1 1112 1203 -6283 235 262 0 0 chr4 162987803 162987845 -39340502 + L1M3de LINE L1 1777 1818 -5668 366 245 11 64 chr4 162987890 162987984 -39340363 + L1M3de LINE L1 1112 1200 -6286 1795 273 81 0 chr4 162988007 162988440 -39339907 + L1M3de LINE L1 1768 2235 -5251 1057 158 0 34 chr4 162988459 162988636 -39339711 - AluJb SINE Alu -2 310 140 2597 221 42 52 chr4 162988636 162989503 -39338844 + L1M3de LINE L1 1997 2970 -4516 1960 135 78 9 chr4 162989509 162989876 -39338471 + LTR7 LTR ERV1 1 448 -2 709 206 29 56 chr4 162989876 162990099 -39338248 + L1M3de LINE L1 2823 3260 -4306 * 1278 233 90 19 chr4 162990097 162990736 -39337611 + L1M3de LINE L1 3026 3721 -3844 1715 136 26 46 chr4 162990737 162991083 -39337264 + L1MA7 LINE L1 5953 6291 0 260 260 183 29 chr4 162991092 162991196 -39337151 + L2 LINE L2 3192 3311 -2 23 0 0 0 chr4 162991348 162991371 -39336976 + AT_rich Low_complexity Low_complexity 1 23 0 1510 139 0 1 chr4 162991414 162991715 -39336632 + LTR32 LTR ERVL 15 349 -122 255 118 0 0 chr4 162991753 162991787 -39336560 + LTR32 LTR ERVL 316 349 -122 899 149 34 0 chr4 162991789 162991937 -39336410 + LTR32 LTR ERVL 317 469 -2 6867 252 34 33 chr4 162991937 162993572 -39334775 + HERVL32 LTR ERVL 2 1641 -1777 2733 111 41 5 chr4 162993572 162993985 -39334362 + MSTA LTR MaLR 1 428 0 6867 252 34 33 chr4 162993985 162994266 -39334081 + HERVL32 LTR ERVL 1641 1920 -1498 897 187 20 147 chr4 162994249 162994548 -39333799 + HERVL32 LTR ERVL 2024 2284 -1134 * 2648 211 91 70 chr4 162994552 162995358 -39332989 + HERVL32 LTR ERVL 2391 3213 -205 347 283 0 9 chr4 162995870 162995976 -39332371 + PRIMA41-int LTR ERV1 6327 6431 -1325 436 223 54 31 chr4 162996011 162996141 -39332206 + HERVL32 LTR ERVL 3286 3418 0 2016 178 5 3 chr4 162996141 162996562 -39331785 + LTR32 LTR ERVL 13 471 0 592 274 128 30 chr4 162997014 162997335 -39331012 + L1ME4a LINE L1 5648 6023 -98 2146 110 7 0 chr4 162997335 162997636 -39330711 - AluSg SINE Alu -7 303 1 592 274 128 30 chr4 162997636 162997745 -39330602 + L1ME4a LINE L1 6023 6120 -1 808 182 112 6 chr4 162997816 162997955 -39330392 - MER5A DNA MER1_type 0 189 27 285 29 0 0 chr4 162997955 162997989 -39330358 + (ATG)n Simple_repeat Simple_repeat 1 34 0 808 182 112 6 chr4 162997989 162998019 -39330328 - MER5A DNA MER1_type -162 27 2 261 222 0 0 chr4 162998527 162998590 -39329757 + GA-rich Low_complexity Low_complexity 2 64 0 204 98 0 73 chr4 162999892 162999933 -39328414 + (CTTTG)n Simple_repeat Simple_repeat 3 40 0 366 275 67 123 chr4 163001891 163002175 -39326172 - L2 LINE L2 -2 3270 3003 299 242 30 0 chr4 163002520 163002586 -39325761 - MER58 DNA MER1_type 0 2420 2353 602 289 19 14 chr4 163003317 163003528 -39324819 - MIR SINE MIR -34 228 17 1399 269 82 31 chr4 163003956 163004442 -39323905 + MLT1H LTR MaLR 7 517 -32 300 193 18 0 chr4 163005165 163005222 -39323125 - MER58 DNA MER1_type -45 2375 2318 599 184 10 0 chr4 163005234 163005332 -39323015 - MER58 DNA MER1_type -2321 99 1 303 235 56 6 chr4 163005502 163005664 -39322683 + (TTATA)n Simple_repeat Simple_repeat 3 172 0 337 244 24 65 chr4 163006138 163006261 -39322086 - L1MC4a LINE L1 -1862 5946 5829 613 280 117 19 chr4 163006800 163007057 -39321290 - MLT1J LTR MaLR 0 511 230 511 216 52 8 chr4 163008821 163008955 -39319392 + L2 LINE L2 3172 3311 -2 1674 217 21 24 chr4 163010194 163010568 -39317779 + MLT1A2 LTR MaLR 2 374 0 853 263 135 30 chr4 163010622 163011051 -39317296 + L2 LINE L2 2838 3311 -2 960 184 0 12 chr4 163014116 163014284 -39314063 + AluJo SINE Alu 122 287 -25 1681 118 0 0 chr4 163014309 163014530 -39313817 + AluSc SINE Alu 80 300 -9 2411 84 0 3 chr4 163014909 163015207 -39313140 - AluSq SINE Alu -16 297 1 540 259 65 32 chr4 163016444 163016629 -39311718 - MIR SINE MIR -52 210 20 961 254 168 15 chr4 163016798 163017526 -39310821 + L2 LINE L2 2469 3312 -1 196 313 12 12 chr4 163018407 163018487 -39309860 - MER5A DNA MER1_type -74 115 36 645 115 58 0 chr4 163018647 163018751 -39309596 - LTR61 LTR ERV1 0 595 486 309 359 19 0 chr4 163018765 163018871 -39309476 + L2 LINE L2 3203 3310 -3 2211 120 0 0 chr4 163018871 163019162 -39309185 + AluSx SINE Alu 5 295 -17 210 343 114 34 chr4 163019185 163019360 -39308987 - MIR SINE MIR -43 219 31 310 323 150 26 chr4 163019865 163020381 -39307966 + L2 LINE L2 2622 3258 -14 303 225 91 113 chr4 163021952 163022065 -39306282 + L1ME4a LINE L1 5798 5912 -209 318 26 0 0 chr4 163022065 163022104 -39306243 + (CA)n Simple_repeat Simple_repeat 1 39 0 303 225 91 113 chr4 163022104 163022310 -39306037 + L1ME4a LINE L1 5912 6110 -11 595 240 0 70 chr4 163023088 163023259 -39305088 + MER97b DNA MER1_type? 21 179 -874 1028 32 0 0 chr4 163023340 163023463 -39304884 + L1PA5 LINE L1 6032 6154 0 1841 135 0 83 chr4 163023485 163023810 -39304537 + AluSx SINE Alu 5 302 -10 433 298 58 0 chr4 163023817 163023988 -39304359 + MIR SINE MIR 32 212 -50 2098 159 5 67 chr4 163025165 163025581 -39302766 + MLT1B LTR MaLR 1 390 0 287 253 38 0 chr4 163027695 163027774 -39300573 + (CATA)n Simple_repeat Simple_repeat 2 83 0 260 291 45 27 chr4 163028324 163028434 -39299913 - Tigger8 DNA MER2_type -525 141 30 2203 125 3 6 chr4 163028986 163029297 -39299050 - AluSq SINE Alu -2 311 2 182 188 14 116 chr4 163029297 163029366 -39298981 - MER5A DNA MER1_type -115 74 13 1816 162 0 7 chr4 163029455 163029739 -39298608 + AluJo SINE Alu 1 282 -30 183 217 149 63 chr4 163030193 163030368 -39297979 + L2 LINE L2 2957 3146 -167 263 270 26 52 chr4 163030946 163031061 -39297286 - L2 LINE L2 -569 2745 2634 276 296 9 19 chr4 163032022 163032130 -39296217 + MIR3 SINE MIR 97 203 -5 215 91 0 0 chr4 163033259 163033292 -39295055 + L2 LINE L2 3280 3312 -1 1698 194 117 14 chr4 163033478 163033907 -39294440 + L1MD2 LINE L1 5887 6359 0 421 219 302 23 chr4 163035869 163036084 -39292263 + L2 LINE L2 3009 3283 -30 728 286 118 43 chr4 163036084 163036552 -39291795 + MLT1J LTR MaLR 1 503 -8 2239 117 7 3 chr4 163036602 163036911 -39291436 - AluSq SINE Alu -2 311 2 194 239 30 45 chr4 163036948 163037015 -39291332 - MER5A DNA MER1_type -50 139 74 320 271 156 15 chr4 163038299 163038498 -39289849 + LTR33 LTR ERVL 230 456 -65 314 286 177 17 chr4 163039066 163039241 -39289106 + MIR SINE MIR 47 249 -13 307 287 132 8 chr4 163039438 163039567 -39288780 + MER5A DNA MER1_type 45 189 0 212 167 0 0 chr4 163040109 163040145 -39288202 + CT-rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr4 163040447 163040475 -39287872 + AT_rich Low_complexity Low_complexity 1 28 0 406 324 60 28 chr4 163040936 163041152 -39287195 - L2 LINE L2 -4 3268 3046 619 277 62 4 chr4 163041685 163041941 -39286406 - HAL1b LINE L1 -49 1299 1029 906 144 5 72 chr4 163041954 163042148 -39286199 - MIR SINE MIR -64 198 18 926 280 87 40 chr4 163042152 163042488 -39285859 - HAL1b LINE L1 -739 609 233 2428 108 83 34 chr4 163042488 163042896 -39285451 - MSTA LTR MaLR 0 428 1 926 280 87 40 chr4 163042896 163043134 -39285213 - HAL1b LINE L1 -1115 233 8 218 247 43 32 chr4 163043141 163043234 -39285113 + T-rich Low_complexity Low_complexity 3 96 0 789 192 102 0 chr4 163043513 163043680 -39284667 - L1MB5 LINE L1 -40 6134 5951 3251 194 31 38 chr4 163044377 163045087 -39283260 - L1MB5 LINE L1 0 6174 5470 290 273 13 0 chr4 163045247 163045324 -39283023 - L2 LINE L2 -10 3303 3226 1435 251 82 25 chr4 163045369 163045772 -39282575 - MLT1D LTR MaLR -2 503 78 986 93 0 7 chr4 163045772 163045911 -39282436 + L1P LINE L1 4893 5030 -1116 338 172 31 0 chr4 163046025 163046089 -39282258 + LTR38 LTR ERV1 472 537 -19 303 267 22 33 chr4 163046253 163046343 -39282004 + L1M3de LINE L1 278 366 -6287 230 233 70 0 chr4 163046370 163046413 -39281934 + L1M3de LINE L1 935 980 -5673 289 300 12 12 chr4 163046567 163046647 -39281700 + L1M3de LINE L1 279 358 -6295 1377 262 78 14 chr4 163046686 163047056 -39281291 + L1M3de LINE L1 935 1328 -5325 800 229 11 11 chr4 163049726 163049901 -39278446 - FRAM SINE Alu 0 176 2 234 319 94 21 chr4 163049975 163050210 -39278137 - MLT1L LTR MaLR 0 615 364 2362 98 7 0 chr4 163051213 163051519 -39276828 + AluSx SINE Alu 1 308 -4 217 417 8 0 chr4 163051646 163051766 -39276581 - MIR SINE MIR -133 129 9 196 336 47 0 chr4 163052018 163052125 -39276222 - L2 LINE L2 -5 3267 3156 1976 153 0 0 chr4 163055619 163055919 -39272428 + AluSx SINE Alu 1 300 -12 289 336 122 0 chr4 163058409 163058540 -39269807 + MER117 DNA MER1_type 47 193 -4 961 222 0 13 chr4 163058810 163059040 -39269307 - AluY SINE Alu -1 310 84 25 0 0 0 chr4 163060298 163060323 -39268024 + AT_rich Low_complexity Low_complexity 1 25 0 397 171 14 0 chr4 163060479 163060549 -39267798 + AluS SINE Alu 15 85 -217 226 114 0 0 chr4 163060651 163060686 -39267661 + L1MB4 LINE L1 6146 6180 0 902 190 51 5 chr4 163063922 163064117 -39264230 + Tigger1 DNA MER2_type 1156 1359 -1059 423 171 34 0 chr4 163064162 163064250 -39264097 + Tigger1 DNA MER2_type 1283 1373 -1045 21 0 0 0 chr4 163065767 163065788 -39262559 + AT_rich Low_complexity Low_complexity 1 21 0 2017 156 7 74 chr4 163066513 163066931 -39261416 + MLT1B LTR MaLR 1 390 0 366 224 0 0 chr4 163070513 163070589 -39257758 - MER58B DNA MER1_type -9 332 257 285 51 0 0 chr4 163071406 163071445 -39256902 + (TG)n Simple_repeat Simple_repeat 1 39 0 394 244 29 35 chr4 163072013 163072185 -39256162 + GA-rich Low_complexity Low_complexity 2 172 0 2063 115 0 14 chr4 163072324 163072603 -39255744 + AluSx SINE Alu 1 275 -37 197 32 0 32 chr4 163072606 163072637 -39255710 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 2682 170 26 66 chr4 163072642 163073220 -39255127 + LTR9 LTR ERV1 58 612 0 269 327 77 32 chr4 163073279 163073462 -39254885 - MER5A DNA MER1_type -10 179 17 450 255 50 14 chr4 163073296 163073327 -39255020 + MER5A DNA MER1_type 44 72 -117 210 71 0 0 chr4 163073327 163073355 -39254992 + (CCA)n Simple_repeat Simple_repeat 1 28 0 450 255 50 14 chr4 163073355 163073464 -39254883 + MER5A DNA MER1_type 72 189 0 188 247 96 27 chr4 163073464 163073526 -39254821 + L3 LINE CR1 1510 1576 -1 231 299 0 41 chr4 163074399 163074496 -39253851 + L2 LINE L2 3209 3301 -12 436 276 195 16 chr4 163074638 163074823 -39253524 + MIR SINE MIR 8 225 -37 827 210 54 27 chr4 163074846 163075032 -39253315 + MER58A DNA MER1_type 34 224 0 1235 225 18 45 chr4 163075279 163075634 -39252713 - L1MB7 LINE L1 -359 5825 5485 223 355 74 8 chr4 163075806 163075927 -39252420 - L2 LINE L2 -10 3262 3134 1443 246 84 27 chr4 163075928 163076331 -39252016 - MLT1D LTR MaLR -2 503 78 3689 73 10 0 chr4 163076331 163076825 -39251522 + L1PA7 LINE L1 4893 5391 -755 5023 68 2 2 chr4 163076827 163077429 -39250918 + L1PA7 LINE L1 5540 6141 -13 390 81 8 266 chr4 163077441 163077565 -39250782 - MLT1D LTR MaLR -413 92 1 966 283 4 8 chr4 163077589 163077829 -39250518 - MIR SINE MIR 0 262 24 1485 195 26 44 chr4 163078193 163078536 -39249811 + MER46C DNA MER2_type 2 338 0 317 292 44 36 chr4 163078991 163079128 -39249219 + MIR3 SINE MIR 11 148 -60 324 306 20 0 chr4 163082372 163082470 -39245877 + L2 LINE L2 2530 2629 -685 3611 102 12 31 chr4 163082606 163083114 -39245233 - MER1A DNA MER1_type -31 498 1 1648 215 247 52 chr4 163083139 163083191 -39245156 - Charlie2a DNA MER1_type -14 2848 2807 1191 209 115 38 chr4 163083191 163083530 -39244817 - MLT1A1 LTR MaLR 0 365 1 1648 215 247 52 chr4 163083530 163084350 -39243997 - Charlie2a DNA MER1_type -55 2807 1805 899 255 9 9 chr4 163084360 163084591 -39243756 + L1ME3A LINE L1 5906 6136 -34 * 5902 84 2 8 chr4 163084585 163085383 -39242964 - L1PA13 LINE L1 -5 6158 5365 1102 235 68 3 chr4 163085383 163085707 -39242640 - Charlie2a DNA MER1_type -1044 1818 1474 2688 91 8 8 chr4 163085891 163086253 -39242094 + L1PA13 LINE L1 5802 6163 0 1382 155 0 0 chr4 163086265 163086465 -39241882 + AluJb SINE Alu 45 244 -68 189 0 0 0 chr4 163086470 163086491 -39241856 + (A)n Simple_repeat Simple_repeat 1 21 0 1019 235 54 29 chr4 163086545 163086822 -39241525 - Charlie2 DNA MER1_type -2467 315 32 491 293 34 48 chr4 163087331 163087539 -39240808 - MIR SINE MIR -48 214 10 2316 99 0 0 chr4 163088022 163088314 -39240033 + AluSc SINE Alu 1 292 -17 650 300 93 46 chr4 163088563 163088930 -39239417 + LTR16C LTR ERVL 107 490 -1 382 259 0 0 chr4 163090028 163090113 -39238234 - MER117 DNA MER1_type -50 147 63 284 248 59 40 chr4 163090172 163090273 -39238074 - L2 LINE L2 -62 3251 3149 831 276 48 99 chr4 163090301 163090804 -39237543 + MLT1J LTR MaLR 33 509 -2 775 239 65 81 chr4 163091598 163091908 -39236439 - MLT1K LTR MaLR 0 588 284 536 255 153 0 chr4 163092213 163092370 -39235977 - MER5A DNA MER1_type 0 189 9 269 344 88 16 chr4 163094867 163094992 -39233355 + L2 LINE L2 3134 3267 -5 270 272 31 7 chr4 163095165 163095260 -39233087 + MIR SINE MIR 20 115 -93 8704 126 38 4 chr4 163095362 163096676 -39231671 + Tigger1 DNA MER2_type 1 1359 -1059 228 111 0 0 chr4 163096676 163096712 -39231635 + Tigger1 DNA MER2_type 1290 1325 -1093 495 110 0 0 chr4 163096721 163096794 -39231553 + Tigger1 DNA MER2_type 1283 1355 -1063 1998 58 0 4 chr4 163098491 163098732 -39229615 + AluY SINE Alu 58 297 -14 285 262 112 9 chr4 163099858 163099965 -39228382 + L1M4 LINE L1 4697 4814 -1332 236 304 106 37 chr4 163100082 163100243 -39228104 + MIR SINE MIR 20 191 -71 546 271 0 0 chr4 163100252 163100381 -39227966 - LTR67 LTR ERVL 0 557 429 238 333 59 29 chr4 163101341 163101443 -39226904 + L2 LINE L2 3186 3290 -23 1639 209 66 0 chr4 163102638 163102958 -39225389 - MER58B DNA MER1_type 0 341 1 2920 130 111 14 chr4 163103017 163103524 -39224823 - MER21A LTR ERV1 0 931 376 1433 131 54 39 chr4 163103529 163103757 -39224590 - MER21A LTR ERV1 -667 264 30 323 23 23 0 chr4 163103757 163103801 -39224546 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 1433 131 54 39 chr4 163103801 163103832 -39224515 - MER21A LTR ERV1 -901 30 1 288 263 42 0 chr4 163104642 163104737 -39223610 - MER115 DNA AcHobo -237 456 358 1145 97 195 0 chr4 163104743 163104938 -39223409 + LTR7 LTR ERV1 1 233 -217 601 224 168 0 chr4 163105987 163106130 -39222217 - MER5A DNA MER1_type -19 170 4 258 208 148 109 chr4 163107005 163107106 -39221241 + MLT1H LTR MaLR 444 548 -1 486 222 37 19 chr4 163107183 163107291 -39221056 - MER58C DNA MER1_type 0 215 106 248 159 23 0 chr4 163107416 163107460 -39220887 - L2 LINE L2 -18 3295 3251 348 111 0 0 chr4 163108028 163108082 -39220265 + (TCCC)n Simple_repeat Simple_repeat 4 57 0 748 134 22 73 chr4 163108155 163108334 -39220013 + Charlie5 DNA MER1_type 2455 2624 0 1314 277 81 12 chr4 163109170 163109746 -39218601 + L2 LINE L2 2486 3093 -220 199 189 0 94 chr4 163109822 163109875 -39218472 + L2 LINE L2 3197 3244 -69 2493 88 48 13 chr4 163110066 163110440 -39217907 - HERVH LTR ERV1 -3 7710 7324 1394 139 19 0 chr4 163110440 163110656 -39217691 - HERVH LTR ERV1 -1894 5819 5600 4285 149 5 6 chr4 163110657 163111320 -39217027 - HERVH LTR ERV1 -2564 5149 4488 3230 97 7 4 chr4 163111322 163111786 -39216561 - HERVH LTR ERV1 -3720 3993 3529 582 243 74 7 chr4 163112004 163112152 -39216195 + MLT1I LTR MaLR 252 409 0 827 181 118 161 chr4 163113605 163114157 -39214190 - LTR8A LTR ERV1 -199 528 1 10037 97 45 15 chr4 163115393 163117415 -39210932 + HERVH LTR ERV1 4 2131 -5582 2184 169 42 8 chr4 163117517 163117896 -39210451 + LTR51 LTR ERV1 280 671 0 1636 229 16 8 chr4 163117921 163118301 -39210046 + MLT1C LTR MaLR 83 465 -2 1645 166 69 94 chr4 163120850 163120914 -39207433 - MLT1C LTR MaLR -3 464 400 2543 44 0 0 chr4 163120914 163121212 -39207135 + AluY SINE Alu 1 298 -13 1645 166 69 94 chr4 163121212 163121582 -39206765 - MLT1C LTR MaLR -67 400 41 1614 158 17 41 chr4 163122452 163122743 -39205604 - AluJo SINE Alu -21 291 8 783 274 126 44 chr4 163122944 163123349 -39204998 - L2 LINE L2 -4 3309 2872 675 211 18 70 chr4 163123379 163123606 -39204741 - L2 LINE L2 -589 2725 2511 777 179 114 14 chr4 163123747 163123887 -39204460 - FRAM SINE Alu -23 153 1 826 83 74 8 chr4 163124036 163124157 -39204190 - MLT1C LTR MaLR -338 129 1 182 263 0 40 chr4 163124245 163124321 -39204026 - L2 LINE L2 -92 3221 3149 180 111 0 0 chr4 163124325 163124352 -39203995 + (CATA)n Simple_repeat Simple_repeat 2 28 0 437 157 9 96 chr4 163124457 163124531 -39203816 + MER5B DNA MER1_type 74 136 -42 1881 238 38 49 chr4 163124531 163125057 -39203290 + MLT2B1 LTR ERVL 1 520 0 437 157 9 96 chr4 163125057 163125097 -39203250 + MER5B DNA MER1_type 136 178 0 1713 198 22 35 chr4 163125487 163125855 -39202492 + MLT1A2 LTR MaLR 1 363 -11 543 282 84 0 chr4 163125907 163126109 -39202238 - L2 LINE L2 -770 2544 2326 1058 127 13 0 chr4 163126153 163126311 -39202036 + MSTB LTR MaLR 267 426 0 5423 114 35 18 chr4 163126311 163127204 -39201143 - Tigger3b DNA MER2_type -81 1150 243 23 0 0 0 chr4 163127776 163127799 -39200548 + AT_rich Low_complexity Low_complexity 1 23 0 275 284 121 29 chr4 163127800 163128039 -39200308 - L1ME4a LINE L1 -24 6097 5837 400 276 159 0 chr4 163131428 163131598 -39196749 + L2 LINE L2 3111 3307 -6 181 300 20 20 chr4 163131638 163131688 -39196659 - L2 LINE L2 -84 3188 3139 2137 145 33 33 chr4 163131987 163132324 -39196023 - MER1B DNA MER1_type 0 337 1 2206 160 29 0 chr4 163132754 163133104 -39195243 + MLT1A1 LTR MaLR 6 365 0 860 277 20 20 chr4 163133197 163133446 -39194901 - MIR SINE MIR -1 261 13 270 217 142 75 chr4 163133459 163133579 -39194768 - MIR SINE MIR -13 249 122 294 279 117 41 chr4 163133829 163134026 -39194321 + HAL1 LINE L1 2207 2418 -89 602 237 110 42 chr4 163134056 163134476 -39193871 + MLT1J LTR MaLR 33 511 0 1981 252 69 30 chr4 163134673 163135426 -39192921 + L1MEc LINE L1 1050 1831 -4565 * 2578 322 79 6 chr4 163135414 163136361 -39191986 + L1M4 LINE L1 4055 5070 -1076 448 229 87 71 chr4 163136598 163136864 -39191483 + L2 LINE L2 2181 2450 -864 361 345 31 21 chr4 163136880 163137071 -39191276 - L2 LINE L2 -841 2473 2281 200 278 0 19 chr4 163137386 163137440 -39190907 + CT-rich Low_complexity Low_complexity 2 54 0 856 217 0 0 chr4 163138241 163138393 -39189954 - AluSg/x SINE Alu -4 308 157 193 317 17 0 chr4 163139178 163139238 -39189109 - L3 LINE CR1 -1 1576 1516 775 245 31 0 chr4 163139563 163139722 -39188625 + MER45A DNA AcHobo 15 178 0 257 75 25 0 chr4 163139967 163140007 -39188340 + (TA)n Simple_repeat Simple_repeat 2 42 0 248 140 0 0 chr4 163140007 163140064 -39188283 - L1MC4 LINE L1 -1339 6703 6647 185 0 40 0 chr4 163140139 163140164 -39188183 + (TA)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr4 163140963 163140984 -39187363 + AT_rich Low_complexity Low_complexity 1 21 0 3742 133 0 30 chr4 163142423 163142964 -39185383 + MER1A DNA MER1_type 2 526 -1 333 0 0 0 chr4 163143589 163143626 -39184721 + (TC)n Simple_repeat Simple_repeat 2 38 0 303 252 85 21 chr4 163144377 163144567 -39183780 + HAL1 LINE L1 2077 2326 -181 21 57 0 0 chr4 163144771 163144806 -39183541 + AT_rich Low_complexity Low_complexity 1 35 0 1605 150 91 21 chr4 163145171 163145457 -39182890 + AluJb SINE Alu 1 306 -6 440 246 8 39 chr4 163145742 163145872 -39182475 + HAL1 LINE L1 2322 2447 -60 2431 76 3 0 chr4 163145923 163146226 -39182121 + AluY SINE Alu 1 304 -7 8302 38 7 0 chr4 163146466 163148150 -39180197 - L1PA5 LINE L1 -13 6141 4430 373 305 93 5 chr4 163148241 163148453 -39179894 - L1MDa LINE L1 -827 2074 1798 342 378 97 32 chr4 163148527 163148900 -39179447 - L1MDa LINE L1 -5471 1059 663 498 228 0 18 chr4 163148954 163149068 -39179279 - MIR SINE MIR -6 256 145 192 163 0 0 chr4 163149213 163149256 -39179091 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 802 180 23 0 chr4 163151504 163151632 -39176715 - FLAM_C SINE Alu -2 131 1 390 320 90 26 chr4 163152353 163152509 -39175838 - MIR3 SINE MIR -23 185 20 1363 258 96 42 chr4 163152952 163153525 -39174822 - L1MEd LINE L1 -5061 1058 455 2419 71 0 0 chr4 163153715 163154012 -39174335 + AluY SINE Alu 1 297 -14 1617 150 153 0 chr4 163154771 163155065 -39173282 + MER44D DNA MER2_type 1 609 0 1658 172 5 93 chr4 163155490 163155868 -39172479 + MER7A DNA MER2_type 4 346 0 193 301 124 26 chr4 163157130 163157243 -39171104 - MIR3 SINE MIR -54 154 31 1797 142 39 18 chr4 163157527 163157808 -39170539 - THE1B LTR MaLR 0 364 78 9147 95 13 13 chr4 163157808 163159082 -39169265 - THE1B-int LTR MaLR -305 1275 1 2418 103 76 15 chr4 163159084 163159425 -39168922 - THE1B LTR MaLR -2 362 1 10868 186 18 9 chr4 163160076 163160346 -39168001 - L1PB1 LINE L1 -2 6865 6599 189 0 0 0 chr4 163160346 163160367 -39167980 + (TA)n Simple_repeat Simple_repeat 1 21 0 10868 186 18 9 chr4 163160367 163163185 -39165162 - L1PB1 LINE L1 -268 6599 3653 26 82 0 0 chr4 163163214 163163275 -39165072 + AT_rich Low_complexity Low_complexity 1 61 0 9801 44 5 165 chr4 163163369 163165019 -39163328 - SVA Other Other 0 1386 1 4481 178 206 6 chr4 163165020 163166072 -39162275 - L1PB1 LINE L1 -4938 1925 663 348 245 94 0 chr4 163166132 163166238 -39162109 - L1PB1 LINE L1 -6742 121 6 731 250 205 4 chr4 163166392 163166660 -39161687 - L1MC4 LINE L1 0 8042 7721 546 281 188 15 chr4 163169585 163169920 -39158427 + L2 LINE L2 2292 2684 -630 525 255 27 37 chr4 163170294 163170482 -39157865 + L2 LINE L2 3125 3310 -3 201 74 0 0 chr4 163172099 163172126 -39156221 + (TA)n Simple_repeat Simple_repeat 2 28 0 250 326 144 8 chr4 163173343 163173475 -39154872 - L2 LINE L2 0 3272 3123 2398 58 3 17 chr4 163174134 163174428 -39153919 + AluY SINE Alu 1 290 -21 368 156 96 181 chr4 163174531 163174730 -39153617 - L1MC4 LINE L1 -326 7716 7535 26 50 0 0 chr4 163175417 163175457 -39152890 + AT_rich Low_complexity Low_complexity 1 40 0 376 264 55 31 chr4 163176154 163176326 -39152021 - MIR SINE MIR -48 214 38 1807 168 0 13 chr4 163176748 163177052 -39151295 + AluJo SINE Alu 1 300 -12 416 247 81 81 chr4 163178583 163178830 -39149517 + LTR33A LTR ERVL 2 248 -275 324 218 218 8 chr4 163178863 163178996 -39149351 + LTR33A LTR ERVL 346 506 -17 391 325 31 44 chr4 163179368 163179756 -39148591 - L2 LINE L2 -430 2884 2502 524 265 147 0 chr4 163180565 163180776 -39147571 + MIR SINE MIR 8 249 -13 272 321 73 0 chr4 163181145 163181254 -39147093 - L2 LINE L2 -10 3303 3187 2476 91 0 0 chr4 163182703 163183012 -39145335 - AluY SINE Alu -2 309 1 356 313 0 50 chr4 163183201 163183361 -39144986 + MIR SINE MIR 62 213 -49 479 165 21 10 chr4 163185586 163185683 -39142664 + MER53 DNA DNA 92 189 0 796 222 12 0 chr4 163185752 163185923 -39142424 + MER5A DNA MER1_type 5 177 -12 391 277 234 21 chr4 163185943 163186131 -39142216 + MIR SINE MIR 13 240 -22 1246 202 46 14 chr4 163187409 163187691 -39140656 + AluJo SINE Alu 11 301 -11 198 0 0 0 chr4 163188111 163188133 -39140214 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 497 258 60 52 chr4 163189924 163190157 -39138190 - MIR SINE MIR 0 262 28 206 282 94 0 chr4 163190284 163190369 -39137978 + MIR SINE MIR 48 140 -122 214 313 0 0 chr4 163190473 163190540 -39137807 - L2 LINE L2 -923 2391 2325 3567 133 6 11 chr4 163190577 163191104 -39137243 - MER1A DNA MER1_type -5 524 1 1927 290 123 44 chr4 163192150 163193756 -39134591 - L2 LINE L2 -6 3307 1560 220 385 6 26 chr4 163194308 163194464 -39133883 - L2 LINE L2 -725 2589 2437 303 168 15 0 chr4 163196018 163196084 -39132263 - MLT1H LTR MaLR -2 547 487 439 275 80 69 chr4 163196214 163196377 -39131970 - MLT1H LTR MaLR -238 311 96 2095 141 3 0 chr4 163196377 163196676 -39131671 + AluJo SINE Alu 1 300 -12 439 275 80 69 chr4 163196676 163196773 -39131574 - MLT1H LTR MaLR -453 96 2 778 252 86 11 chr4 163199081 163199359 -39128988 + L1ME4a LINE L1 5571 5869 -252 458 227 121 0 chr4 163199387 163199519 -39128828 + MIR SINE MIR 95 242 -20 224 336 17 60 chr4 163200056 163200172 -39128175 - L2 LINE L2 -1 3271 3161 736 275 78 39 chr4 163200485 163200870 -39127477 - L2 LINE L2 -1257 2057 1658 415 77 15 15 chr4 163200885 163200950 -39127397 + L1MB1 LINE L1 6103 6167 -1 3089 266 90 58 chr4 163201010 163202658 -39125689 + HAL1 LINE L1 1 1701 -806 446 257 101 52 chr4 163202700 163202988 -39125359 + HAL1 LINE L1 1871 2172 -335 833 157 0 8 chr4 163203875 163204009 -39124338 + FLAM_C SINE Alu 1 133 0 218 338 106 21 chr4 163204268 163204410 -39123937 + MIR3 SINE MIR 45 198 -10 272 323 10 0 chr4 163204717 163204813 -39123534 + MIR SINE MIR 63 159 -103 2132 86 14 7 chr4 163204815 163205093 -39123254 + AluY SINE Alu 17 296 -15 2653 43 0 0 chr4 163205093 163205395 -39122952 + AluY SINE Alu 1 302 -9 1354 203 62 24 chr4 163207274 163207614 -39120733 - L1MC2 LINE L1 -2 6342 5990 1354 213 88 0 chr4 163207820 163208139 -39120208 + MER7A DNA MER2_type 2 346 0 267 240 25 66 chr4 163210352 163210473 -39117874 + L2 LINE L2 3186 3301 -12 2153 97 13 10 chr4 163210558 163210857 -39117490 - AluSx SINE Alu -12 300 1 313 270 45 9 chr4 163211928 163212039 -39116308 - L1MCa LINE L1 -4313 2113 1999 1106 77 0 0 chr4 163212042 163212185 -39116162 - AluY SINE Alu -7 304 162 30 0 0 0 chr4 163212281 163212311 -39116036 + AT_rich Low_complexity Low_complexity 1 30 0 3820 135 28 6 chr4 163212340 163212975 -39115372 - L1PB4 LINE L1 -4 6152 5504 263 323 137 0 chr4 163213306 163213467 -39114880 - MIR SINE MIR -78 184 2 1831 128 0 82 chr4 163213886 163214214 -39114133 + AluJo SINE Alu 3 303 -9 258 252 68 0 chr4 163215600 163215703 -39112644 - L2 LINE L2 -22 3250 3141 197 341 71 0 chr4 163216756 163216841 -39111506 - L2 LINE L2 0 3313 3223 883 205 121 96 chr4 163217273 163217629 -39110718 - MLT1A2 LTR MaLR 0 374 10 208 319 44 0 chr4 163217634 163217725 -39110622 - L2 LINE L2 -654 2660 2566 222 308 62 48 chr4 163217877 163218023 -39110324 - L2 LINE L2 -941 2373 2226 257 294 47 53 chr4 163218189 163218359 -39109988 - L2 LINE L2 -235 3037 2869 242 228 121 8 chr4 163218880 163219004 -39109343 + MIR SINE MIR 46 183 -64 2243 109 0 16 chr4 163219125 163219437 -39108910 - AluSx SINE Alu 0 312 6 290 217 133 12 chr4 163221460 163221543 -39106804 + MER58 DNA MER1_type 2 94 -121 1848 196 22 17 chr4 163223235 163223592 -39104755 + MLT1A1 LTR MaLR 7 365 0 1533 118 35 4 chr4 163224333 163224562 -39103785 + MER46A DNA MER2_type 1 236 0 2185 107 0 10 chr4 163226055 163226365 -39101982 + AluSg SINE Alu 1 307 -3 189 0 0 0 chr4 163226790 163226811 -39101536 + (GA)n Simple_repeat Simple_repeat 2 22 0 265 252 159 9 chr4 163227186 163227293 -39101054 - HAL1b LINE L1 -7 1341 1219 21 57 0 0 chr4 163227366 163227401 -39100946 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr4 163227446 163227471 -39100876 + AT_rich Low_complexity Low_complexity 1 25 0 1999 177 62 71 chr4 163227487 163228023 -39100324 - L1MB7 LINE L1 -326 5858 5328 566 217 179 9 chr4 163230591 163230803 -39097544 + L1ME4a LINE L1 5870 6117 -4 332 200 62 0 chr4 163234430 163234510 -39093837 - L2 LINE L2 -5 3308 3224 180 250 15 73 chr4 163236480 163236548 -39091799 + L2 LINE L2 3208 3271 -1 459 286 117 6 chr4 163239000 163239171 -39089176 + MIR SINE MIR 40 229 -33 322 48 0 0 chr4 163241583 163241625 -39086722 - MADE1 DNA Mariner 0 80 39 1829 147 10 7 chr4 163245289 163245589 -39082758 + AluJb SINE Alu 1 301 -11 567 194 169 0 chr4 163249584 163249708 -39078639 + MIR SINE MIR 66 210 -52 181 365 113 6 chr4 163249892 163250051 -39078296 + L2 LINE L2 3097 3272 0 1133 254 92 35 chr4 163251952 163252378 -39075969 + MLT1H LTR MaLR 80 529 -20 242 326 74 22 chr4 163252662 163252797 -39075550 - MIR3 SINE MIR -25 183 42 26 50 0 0 chr4 163254672 163254712 -39073635 + AT_rich Low_complexity Low_complexity 1 40 0 541 259 189 5 chr4 163257008 163257220 -39071127 - MIR SINE MIR -10 252 2 312 91 0 0 chr4 163257229 163257273 -39071074 + (GA)n Simple_repeat Simple_repeat 1 44 0 769 278 59 22 chr4 163257299 163257572 -39070775 - L1MC4a LINE L1 -1935 5942 5660 220 309 92 42 chr4 163257574 163257836 -39070511 + L2 LINE L2 2614 2888 -426 231 315 11 33 chr4 163258048 163258140 -39070207 + L2 LINE L2 3224 3313 0 307 243 289 13 chr4 163259555 163259707 -39068640 - L2 LINE L2 -6 3307 3114 312 304 0 0 chr4 163260158 163260237 -39068110 + CT-rich Low_complexity Low_complexity 3 81 0 238 284 136 0 chr4 163261445 163261533 -39066814 + MIR SINE MIR 137 236 -26 504 280 109 0 chr4 163261904 163262079 -39066268 - MIR SINE MIR -50 212 19 698 229 109 25 chr4 163262285 163262486 -39065861 - MIR SINE MIR -9 253 36 291 253 84 11 chr4 163262639 163262734 -39065613 + MIR SINE MIR 72 173 -89 279 398 8 0 chr4 163264323 163264451 -39063896 + L2 LINE L2 2915 3043 -229 1690 186 0 0 chr4 163265983 163266289 -39062058 + AluJo SINE Alu 5 310 -2 2582 121 55 9 chr4 163266897 163267319 -39061028 + L1MA4 LINE L1 5860 6300 0 186 99 55 44 chr4 163267687 163267778 -39060569 + (TA)n Simple_repeat Simple_repeat 2 93 0 264 30 0 0 chr4 163268142 163268175 -39060172 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1547 97 60 0 chr4 163268983 163269200 -39059147 + MER30 DNA MER1_type 1 230 0 206 277 0 31 chr4 163269211 163269276 -39059071 - MIR SINE MIR -46 216 154 849 159 22 0 chr4 163270435 163270573 -39057774 - MER5A DNA MER1_type -1 188 48 303 28 0 0 chr4 163272279 163272315 -39056032 + (CA)n Simple_repeat Simple_repeat 1 36 0 368 367 25 13 chr4 163273008 163273166 -39055181 + L2 LINE L2 2890 3049 -223 4406 252 116 12 chr4 163273319 163274908 -39053439 - L1MC4a LINE L1 -834 5381 3627 * 11113 230 44 21 chr4 163274898 163278909 -39049438 - L1MB2 LINE L1 -1 6406 2296 496 288 45 82 chr4 163278954 163279246 -39049101 - L1MB2 LINE L1 -5609 694 414 2835 233 76 5 chr4 163279260 163280106 -39048241 - L1MC4a LINE L1 -2584 3631 2726 519 253 42 42 chr4 163280107 163280392 -39047955 - L1MC4a LINE L1 -4248 2148 1864 223 245 20 0 chr4 163281469 163281518 -39046829 - L2 LINE L2 -2 3270 3221 182 299 208 0 chr4 163282858 163282935 -39045412 + L2 LINE L2 3178 3270 -2 362 175 0 0 chr4 163284581 163284644 -39043703 - MER112 DNA MER1_type -106 154 92 21 36 0 0 chr4 163286228 163286256 -39042091 + AT_rich Low_complexity Low_complexity 1 28 0 263 224 171 0 chr4 163286731 163286807 -39041540 - L2 LINE L2 -8 3264 3176 499 260 163 31 chr4 163286973 163287200 -39041147 + MIR SINE MIR 6 262 0 189 0 0 0 chr4 163287243 163287264 -39041083 + (A)n Simple_repeat Simple_repeat 1 21 0 334 239 80 0 chr4 163288221 163288309 -39040038 - LTR67 LTR ERVL -35 522 428 297 300 112 72 chr4 163288380 163288657 -39039690 - L3b LINE CR1 -143 1440 1153 21 0 0 0 chr4 163290231 163290252 -39038095 + AT_rich Low_complexity Low_complexity 1 21 0 347 255 117 0 chr4 163290348 163290442 -39037905 - MER91A DNA MER1_type -2 194 90 648 288 29 6 chr4 163290461 163290631 -39037716 - MER91A DNA MER1_type -22 174 1 619 245 160 11 chr4 163290728 163290916 -39037431 + MLT1J LTR MaLR 1 216 -295 333 167 0 61 chr4 163291042 163291108 -39037239 + L2 LINE L2 3247 3308 -5 425 209 183 0 chr4 163291290 163291405 -39036942 + MER112 DNA MER1_type 112 247 -13 245 246 66 107 chr4 163292370 163292492 -39035855 + MIR3 SINE MIR 88 204 -4 2369 91 0 0 chr4 163292886 163293182 -39035165 - AluSx SINE Alu -16 296 1 180 77 0 0 chr4 163295549 163295575 -39032772 + (TG)n Simple_repeat Simple_repeat 2 27 0 291 308 0 0 chr4 163296120 163296211 -39032136 + LTR16A1 LTR ERVL 341 431 -26 226 386 0 0 chr4 163296291 163296392 -39031955 - Charlie7 DNA MER1_type -2511 101 1 248 335 51 51 chr4 163296406 163296815 -39031532 - L2 LINE L2 -562 2752 2344 308 388 31 23 chr4 163296970 163297099 -39031248 - L2 LINE L2 -18 3254 3125 704 239 12 89 chr4 163297130 163297377 -39030970 + MIR SINE MIR 29 256 -6 195 212 0 0 chr4 163297383 163297416 -39030931 - MIR SINE MIR -13 249 217 270 0 0 0 chr4 163298169 163298199 -39030148 + (CA)n Simple_repeat Simple_repeat 2 31 0 1306 116 0 0 chr4 163298842 163299023 -39029324 + AluY SINE Alu 128 308 -3 1266 196 50 50 chr4 163299025 163299367 -39028980 + L1MB8 LINE L1 5302 5643 -541 1032 201 149 62 chr4 163299371 163299435 -39028912 - MER31B LTR ERV1 -7 459 402 2400 117 37 0 chr4 163299435 163299786 -39028561 + THE1B LTR MaLR 1 364 0 1032 201 149 62 chr4 163299786 163300143 -39028204 - MER31B LTR ERV1 -64 402 1 1255 175 124 0 chr4 163300143 163300434 -39027913 + L1MB8 LINE L1 5642 5968 -210 489 322 48 18 chr4 163301080 163301307 -39027040 + MIR SINE MIR 3 236 -26 422 269 76 8 chr4 163301804 163301923 -39026424 - L2 LINE L2 -10 3303 3177 452 229 21 0 chr4 163302260 163302356 -39025991 + L2 LINE L2 2704 2801 -513 499 257 59 32 chr4 163302491 163302678 -39025669 + L2 LINE L2 3119 3310 -3 273 266 4 8 chr4 163302676 163302754 -39025593 + MIR SINE MIR 92 169 -39 * 1003 196 12 0 chr4 163303215 163303388 -39024959 + MER5A DNA MER1_type 2 176 -13 309 249 44 44 chr4 163303521 163303702 -39024645 - L1MEd LINE L1 -4915 1204 1024 26 30 0 0 chr4 163304462 163304495 -39023852 + AT_rich Low_complexity Low_complexity 1 33 0 230 186 0 116 chr4 163304957 163305043 -39023304 - L1ME1 LINE L1 -127 6039 5964 1256 263 75 42 chr4 163305084 163305818 -39022529 - L1MEc LINE L1 -4922 1474 717 1529 104 0 14 chr4 163305818 163306038 -39022309 - AluY SINE Alu -3 308 92 357 309 114 8 chr4 163306560 163306683 -39021664 - L2 LINE L2 -20 3252 3117 10270 32 0 0 chr4 163307692 163308935 -39019412 - L1P LINE L1 -3531 2615 1373 591 243 126 5 chr4 163309203 163309417 -39018930 - MIR SINE MIR -10 252 13 324 267 18 0 chr4 163309625 163309790 -39018557 - L1M4 LINE L1 -2907 3239 3072 4801 174 36 4 chr4 163309835 163310896 -39017451 + L1MB2 LINE L1 5077 6169 -2 272 339 46 30 chr4 163311623 163311859 -39016488 + L2 LINE L2 2767 3008 -264 378 345 28 0 chr4 163312126 163312268 -39016079 - MIR SINE MIR -60 202 57 414 100 0 0 chr4 163312272 163312332 -39016015 + (CTATT)n Simple_repeat Simple_repeat 1 60 0 562 162 0 10 chr4 163312332 163312431 -39015916 - FRAM SINE Alu -26 150 53 212 283 0 17 chr4 163313374 163313434 -39014913 + MIR SINE MIR 46 104 -158 1297 238 40 3 chr4 163313437 163313760 -39014587 - MLT1E3 LTR MaLR 0 624 290 406 361 33 22 chr4 163313784 163313967 -39014380 - MIR SINE MIR -65 197 13 281 282 14 0 chr4 163314096 163314167 -39014180 + L2 LINE L2 3242 3313 0 375 216 27 60 chr4 163314182 163314367 -39013980 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 628 88 29 0 chr4 163314562 163314664 -39013683 + AluY SINE Alu 206 310 -1 474 311 81 14 chr4 163315605 163315814 -39012533 - MIR SINE MIR -3 259 37 338 299 95 39 chr4 163316834 163317065 -39011282 + MARNA DNA Mariner 301 544 -42 22 0 0 0 chr4 163317271 163317293 -39011054 + AT_rich Low_complexity Low_complexity 1 22 0 873 94 8 0 chr4 163318136 163318263 -39010084 + MER41B LTR ERV1 481 608 -27 24 77 0 0 chr4 163318447 163318499 -39009848 + AT_rich Low_complexity Low_complexity 1 52 0 345 91 0 0 chr4 163319282 163319337 -39009010 + AluSp/q SINE Alu 247 301 -2 273 235 12 12 chr4 163319349 163319430 -39008917 - L1ME4a LINE L1 -70 6051 5971 2244 110 10 0 chr4 163319430 163319739 -39008608 - AluSx SINE Alu 0 312 1 4887 195 48 10 chr4 163319806 163320867 -39007480 + L1P LINE L1 4179 5279 -867 * 6782 198 13 30 chr4 163320863 163322346 -39006001 - L1 LINE L1 -1884 4262 2821 2062 131 0 0 chr4 163322346 163322628 -39005719 - AluSx SINE Alu -9 303 22 6782 198 13 30 chr4 163322628 163323058 -39005289 - L1 LINE L1 -3325 2821 2385 17538 110 39 10 chr4 163323160 163325797 -39002550 - L1PBa LINE L1 -4151 2712 1 774 278 73 36 chr4 163325991 163326430 -39001917 + L1MB4 LINE L1 5572 6026 -154 * 3171 120 77 2 chr4 163326047 163326515 -39001832 + L1PA16 LINE L1 5626 6128 -38 334 321 76 22 chr4 163326640 163326824 -39001523 - L2 LINE L2 -693 2621 2428 896 269 58 0 chr4 163326832 163327074 -39001273 + MIR SINE MIR 2 257 -5 250 345 14 14 chr4 163327090 163327229 -39001118 - L2 LINE L2 -888 2426 2288 2424 86 0 3 chr4 163327730 163328032 -39000315 - AluSq SINE Alu -11 302 2 294 269 40 114 chr4 163328208 163328383 -38999964 + MER5A DNA MER1_type 24 185 -4 626 195 101 95 chr4 163328439 163328466 -38999881 - MER5A DNA MER1_type -18 171 146 1980 171 27 24 chr4 163328466 163328800 -38999547 + MER1B DNA MER1_type 3 337 0 626 195 101 95 chr4 163328800 163328829 -38999518 - MER5A DNA MER1_type -43 146 119 1801 165 10 3 chr4 163328829 163329126 -38999221 + AluJb SINE Alu 1 299 -13 626 195 101 95 chr4 163329126 163329237 -38999110 - MER5A DNA MER1_type -70 119 2 180 0 0 0 chr4 163329415 163329435 -38998912 + (A)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr4 163329547 163329575 -38998772 + AT_rich Low_complexity Low_complexity 1 28 0 474 124 3 4 chr4 163330924 163331006 -38997341 + L1MA5A LINE L1 5965 6056 -241 1822 150 4 0 chr4 163331113 163331387 -38996960 - AluSq SINE Alu -38 275 1 195 69 0 0 chr4 163331698 163331727 -38996620 + (TA)n Simple_repeat Simple_repeat 1 29 0 1436 205 0 44 chr4 163332028 163332326 -38996021 - AluJb SINE Alu -27 285 1 210 209 15 15 chr4 163332395 163332462 -38995885 + A-rich Low_complexity Low_complexity 4 70 0 748 258 84 0 chr4 163332819 163332997 -38995350 + MER58C DNA MER1_type 15 207 -8 714 179 71 92 chr4 163333013 163333209 -38995138 + MER20 DNA MER1_type 1 192 -27 2199 186 5 38 chr4 163333209 163333687 -38994660 + MER31B LTR ERV1 1 464 -2 2485 61 0 3 chr4 163333998 163334295 -38994052 + AluY SINE Alu 1 296 -15 2828 100 14 3 chr4 163335056 163335425 -38992922 - THE1C LTR MaLR 0 375 3 180 0 0 0 chr4 163335903 163335923 -38992424 + (A)n Simple_repeat Simple_repeat 1 20 0 793 222 64 15 chr4 163335923 163336126 -38992221 + MIR SINE MIR 29 241 -21 1267 192 25 72 chr4 163336642 163337021 -38991326 - L1ME LINE L1 -419 5750 5398 974 165 13 64 chr4 163337062 163337298 -38991049 - L1M4 LINE L1 -694 5480 5257 2019 200 33 23 chr4 163337308 163337498 -38990849 + L1M4 LINE L1 1038 1225 -5317 1445 168 63 66 chr4 163337498 163337820 -38990527 + AluJo SINE Alu 1 321 0 2019 200 33 23 chr4 163337820 163338148 -38990199 + L1M4 LINE L1 1225 1562 -4980 3645 147 27 43 chr4 163338520 163339141 -38989206 - LTR36 LTR ERV1 0 611 1 9446 26 0 240 chr4 163340377 163342201 -38986146 + SVA Other Other 1 1386 0 209 289 171 53 chr4 163343434 163343586 -38984761 + MIR3 SINE MIR 15 184 -24 2255 87 28 0 chr4 163343636 163343924 -38984423 - AluSg SINE Alu -14 296 1 354 215 149 0 chr4 163344286 163344393 -38983954 + L2 LINE L2 3187 3309 -4 1962 156 0 3 chr4 163345928 163346229 -38982118 + AluJb SINE Alu 1 300 -12 405 0 0 0 chr4 163346229 163346274 -38982073 + (CATA)n Simple_repeat Simple_repeat 2 46 0 249 252 92 34 chr4 163347395 163347514 -38980833 + L1ME LINE L1 5695 5820 -301 1795 219 86 51 chr4 163347538 163348848 -38979499 + L1ME2 LINE L1 4796 6134 -30 945 152 76 125 chr4 163348973 163349237 -38979110 + AluJo SINE Alu 1 251 -61 287 146 18 0 chr4 163349255 163349310 -38979037 + GA-rich Low_complexity Low_complexity 1 56 0 2405 134 33 0 chr4 163349499 163349865 -38978482 - Tigger3(Golem) DNA MER2_type -2 3027 2650 263 288 0 0 chr4 163349966 163350025 -38978322 - Tigger3(Golem) DNA MER2_type -2967 62 4 24 32 0 0 chr4 163350144 163350175 -38978172 + AT_rich Low_complexity Low_complexity 1 31 0 45352 36 1 4 chr4 163350177 163356341 -38972006 - L1PA3 LINE L1 -5 6150 2 210 313 83 49 chr4 163356616 163356760 -38971587 + L2 LINE L2 3161 3309 -4 499 221 8 16 chr4 163357096 163357218 -38971129 + L1MD2 LINE L1 6236 6356 -3 1674 178 10 16 chr4 163357227 163357530 -38970817 + AluJo SINE Alu 1 301 -11 264 30 0 0 chr4 163357847 163357880 -38970467 + (CA)n Simple_repeat Simple_repeat 2 34 0 2383 78 7 10 chr4 163358171 163358478 -38969869 + AluY SINE Alu 1 306 -5 1743 160 0 0 chr4 163360235 163360503 -38967844 + AluJo SINE Alu 24 291 -21 23 0 0 0 chr4 163360732 163360755 -38967592 + AT_rich Low_complexity Low_complexity 1 23 0 2539 180 21 12 chr4 163360830 163361258 -38967089 + MSTB1 LTR MaLR 1 432 0 941 184 84 5 chr4 163361428 163361618 -38966729 + AluJo SINE Alu 1 205 -107 2002 137 0 20 chr4 163362138 163362444 -38965903 - AluJb SINE Alu -12 300 1 2235 121 0 0 chr4 163362453 163362750 -38965597 - AluSx SINE Alu -15 297 1 503 229 147 25 chr4 163362779 163362936 -38965411 + MER5B DNA MER1_type 1 176 -2 424 247 11 11 chr4 163363533 163363626 -38964721 + MER5B DNA MER1_type 1 93 -85 2113 138 0 3 chr4 163363949 163364254 -38964093 + AluSx SINE Alu 1 304 -8 545 285 54 32 chr4 163364441 163364627 -38963720 + MIR3 SINE MIR 5 194 -14 202 215 46 62 chr4 163364794 163364859 -38963488 - L2 LINE L2 0 3272 3209 252 86 0 0 chr4 163365526 163365561 -38962786 + (CA)n Simple_repeat Simple_repeat 2 36 0 814 214 78 21 chr4 163366389 163366581 -38961766 - MIR SINE MIR -32 230 28 369 279 165 0 chr4 163368030 163368188 -38960159 + MER5A DNA MER1_type 1 184 -5 223 242 0 16 chr4 163368261 163368286 -38960061 + A-rich Low_complexity Low_complexity 3 27 -36 2284 129 0 0 chr4 163368286 163368596 -38959751 + AluSx SINE Alu 1 310 -2 223 242 0 16 chr4 163368596 163368632 -38959715 + A-rich Low_complexity Low_complexity 27 63 0 434 258 148 31 chr4 163368809 163369038 -38959309 - MIR SINE MIR 0 262 7 320 238 0 38 chr4 163371661 163371741 -38956606 - MER119 DNA MER1_type -299 284 208 26 0 0 0 chr4 163371741 163371767 -38956580 + AT_rich Low_complexity Low_complexity 1 26 0 2242 112 0 0 chr4 163371770 163372064 -38956283 - AluSx SINE Alu -18 294 1 796 275 45 0 chr4 163372095 163372273 -38956074 - MER119 DNA MER1_type -397 186 1 228 340 13 47 chr4 163372422 163372572 -38955775 - L2 LINE L2 -218 3054 2910 2253 98 0 7 chr4 163373305 163373600 -38954747 - AluSg SINE Alu -17 293 1 476 224 26 87 chr4 163374405 163374474 -38953873 - MIR3 SINE MIR -53 155 83 2297 97 63 26 chr4 163374474 163374825 -38953522 + THE1B LTR MaLR 1 364 0 476 224 26 87 chr4 163374825 163374953 -38953394 - MIR3 SINE MIR -125 83 5 629 293 47 4 chr4 163375290 163375543 -38952804 + LTR33 LTR ERVL 22 285 -236 691 233 47 49 chr4 163375612 163375899 -38952448 + MLT1G LTR MaLR 16 268 -274 605 237 21 46 chr4 163375923 163376117 -38952230 + MLT1G LTR MaLR 402 590 0 251 236 45 11 chr4 163376118 163376207 -38952140 + LTR33 LTR ERVL 430 521 0 972 215 39 56 chr4 163376221 163376505 -38951842 + MLT1I LTR MaLR 10 288 -121 363 217 76 0 chr4 163376583 163376675 -38951672 + MLT1I LTR MaLR 310 408 -1 1013 261 123 31 chr4 163376849 163377270 -38951077 + LTR16B LTR ERVL 3 462 -2 805 226 73 67 chr4 163377550 163377877 -38950470 - MER46C DNA MER2_type -8 330 2 29134 105 18 63 chr4 163378145 163381760 -38946587 + L1PA7 LINE L1 12 3788 -2366 2352 81 10 0 chr4 163381760 163382056 -38946291 + AluY SINE Alu 1 299 -12 29134 105 18 63 chr4 163382056 163384199 -38944148 + L1PA7 LINE L1 3788 5438 -716 2491 65 0 0 chr4 163384199 163384492 -38943855 + AluY SINE Alu 1 293 -18 29134 105 18 63 chr4 163384492 163385168 -38943179 + L1PA7 LINE L1 5438 6143 -11 26 30 0 0 chr4 163385174 163385207 -38943140 + AT_rich Low_complexity Low_complexity 1 33 0 320 260 41 71 chr4 163385984 163386153 -38942194 - L2 LINE L2 -30 3283 3120 1058 45 0 0 chr4 163388970 163389104 -38939243 + L1PA4 LINE L1 6021 6154 -1 273 206 48 16 chr4 163390027 163390090 -38938257 - MER5A DNA MER1_type -116 73 9 197 300 75 67 chr4 163390231 163390351 -38937996 - L2 LINE L2 -24 3289 3169 1850 148 10 10 chr4 163391143 163391440 -38936907 + AluSx SINE Alu 1 297 -15 595 314 84 16 chr4 163391691 163391947 -38936400 - L2 LINE L2 -220 3052 2782 327 273 127 20 chr4 163391955 163392105 -38936242 - L2 LINE L2 -994 2320 2155 257 353 35 0 chr4 163392586 163392671 -38935676 - L2 LINE L2 0 3272 3185 29 47 0 0 chr4 163393563 163393606 -38934741 + AT_rich Low_complexity Low_complexity 1 43 0 2195 96 3 3 chr4 163393860 163394175 -38934172 + AluSx SINE Alu 1 315 0 420 300 131 31 chr4 163394202 163394585 -38933762 - L1ME1 LINE L1 -314 5852 5432 588 234 128 102 chr4 163394585 163395231 -38933116 + L1MC4 LINE L1 7380 8042 0 239 225 139 20 chr4 163395302 163395453 -38932894 - L1ME1 LINE L1 -1630 4516 4348 5182 130 7 7 chr4 163395597 163396434 -38931913 - L1MC1 LINE L1 -17 6316 5480 278 200 0 0 chr4 163398137 163398187 -38930160 - 7SK RNA RNA -9 184 135 1503 159 58 12 chr4 163398446 163398704 -38929643 + AluJb SINE Alu 33 302 -10 443 254 96 42 chr4 163399915 163400175 -38928172 + L1ME LINE L1 5525 5798 -323 230 227 30 0 chr4 163400457 163400523 -38927824 + (TA)n Simple_repeat Simple_repeat 2 69 0 312 27 0 0 chr4 163401709 163401746 -38926601 + (TG)n Simple_repeat Simple_repeat 2 38 0 2253 102 3 0 chr4 163402800 163403093 -38925254 - AluSx SINE Alu -18 294 1 268 273 0 0 chr4 163404260 163404315 -38924032 - L2 LINE L2 -14 3299 3245 901 171 33 0 chr4 163404409 163404561 -38923786 + FAM SINE Alu 7 163 -22 227 304 117 18 chr4 163404646 163404817 -38923530 - L2 LINE L2 -215 3057 2870 2266 107 0 0 chr4 163405447 163405747 -38922600 - AluSg SINE Alu -10 300 1 227 291 23 0 chr4 163407315 163407401 -38920946 - Charlie7 DNA MER1_type -2518 94 7 764 289 50 25 chr4 163408038 163408280 -38920067 + MIR SINE MIR 4 251 -11 21 71 0 0 chr4 163408892 163408934 -38919413 + AT_rich Low_complexity Low_complexity 1 42 0 212 383 101 10 chr4 163410029 163410238 -38918109 + L3b LINE CR1 1110 1337 -246 214 27 0 54 chr4 163411181 163411218 -38917129 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1870 128 11 11 chr4 163411224 163411505 -38916842 - AluJo SINE Alu -30 282 2 22 0 0 0 chr4 163412092 163412114 -38916233 + AT_rich Low_complexity Low_complexity 1 22 0 300 340 142 4 chr4 163412606 163412838 -38915509 - L2 LINE L2 -1524 1790 1527 251 269 156 62 chr4 163413095 163413255 -38915092 + MIR3 SINE MIR 30 204 -4 22 0 0 0 chr4 163414328 163414350 -38913997 + AT_rich Low_complexity Low_complexity 1 22 0 493 257 131 19 chr4 163415487 163415701 -38912646 + L1MC4a LINE L1 5701 5938 -1870 317 226 0 0 chr4 163416415 163416477 -38911870 + Charlie1 DNA MER1_type 1 62 -2699 1923 134 10 7 chr4 163416642 163416960 -38911387 - AluSx SINE Alu 0 312 1 573 225 175 1 chr4 163420967 163421146 -38907201 - MIR SINE MIR -3 259 54 218 32 32 0 chr4 163421362 163421393 -38906954 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 186 43 0 0 chr4 163422350 163422373 -38905974 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 6754 56 7 0 chr4 163422376 163423271 -38905076 - L1PA6 LINE L1 0 6154 5254 7465 56 10 0 chr4 163422385 163423942 -38904405 - L1PA6 LINE L1 -9 6145 4579 1203 248 104 13 chr4 163424084 163424459 -38903888 + LTR16A LTR ERVL 25 433 -17 1936 102 35 3 chr4 163424831 163425116 -38903231 + L1MA1 LINE L1 6009 6302 0 2111 105 17 0 chr4 163425407 163425701 -38902646 - MER41B LTR ERV1 -2 633 335 983 100 0 0 chr4 163425702 163425832 -38902515 - AluSx SINE Alu -9 301 172 3214 143 20 9 chr4 163425832 163426370 -38901977 + LTR10A LTR ERV1 1 544 -65 1332 124 0 0 chr4 163426397 163426574 -38901773 - AluSx SINE Alu -135 177 1 2156 103 3 38 chr4 163426574 163426894 -38901453 - MER41A LTR ERV1 -245 309 1 413 318 18 21 chr4 163427077 163427276 -38901071 + MIR SINE MIR 26 224 -38 2343 108 0 0 chr4 163427276 163427582 -38900765 - AluSx SINE Alu -6 306 1 413 318 18 21 chr4 163427582 163427593 -38900754 + MIR SINE MIR 224 234 -28 415 287 32 50 chr4 163428525 163428716 -38899631 + L2 LINE L2 2977 3241 -31 2938 162 30 55 chr4 163428716 163429284 -38899063 - MLT2B3 LTR ERVL 0 554 1 415 287 32 50 chr4 163429284 163429315 -38899032 + L2 LINE L2 3241 3271 -1 2495 81 0 0 chr4 163429538 163429848 -38898499 + AluY SINE Alu 1 310 -1 1419 171 16 8 chr4 163430130 163430382 -38897965 - AluJo SINE Alu -20 292 39 329 272 79 41 chr4 163430957 163431103 -38897244 + MIR3 SINE MIR 57 208 0 246 213 107 57 chr4 163431295 163431417 -38896930 + L1ME LINE L1 5541 5668 -453 985 239 39 28 chr4 163431710 163431965 -38896382 + MIR SINE MIR 5 262 0 526 231 150 7 chr4 163432063 163432210 -38896137 - MIR SINE MIR -94 168 1 979 205 205 8 chr4 163432796 163433059 -38895288 - MER61A LTR ERV1 -28 315 1 181 189 27 0 chr4 163433755 163433792 -38894555 - L2 LINE L2 -1 3312 3275 1926 122 63 0 chr4 163435397 163435683 -38892664 - AluSx SINE Alu -8 304 1 452 263 15 29 chr4 163436435 163436572 -38891775 - MER5A DNA MER1_type -11 178 44 786 253 59 32 chr4 163436593 163436846 -38891501 - MIR SINE MIR 0 262 3 5240 186 50 15 chr4 163437308 163437806 -38890541 + L1MD2 LINE L1 5076 5555 -804 1825 148 19 19 chr4 163437806 163438117 -38890230 + AluJb SINE Alu 1 311 -1 5240 186 50 15 chr4 163438117 163438862 -38889485 + L1MD2 LINE L1 5555 6351 -8 454 307 35 10 chr4 163438920 163439122 -38889225 + L1ME4a LINE L1 5540 5746 -2062 244 217 0 17 chr4 163439101 163439161 -38889186 + L1P4 LINE L1 5760 5818 -347 * 276 246 15 0 chr4 163439208 163439273 -38889074 - L2 LINE L2 0 3313 3248 230 306 18 27 chr4 163439436 163439547 -38888800 + L1ME4a LINE L1 5935 6044 -77 484 301 77 29 chr4 163439668 163439746 -38888601 - L1ME LINE L1 -346 5775 5702 1805 160 13 7 chr4 163439746 163440046 -38888301 - AluJo SINE Alu -10 302 1 484 301 77 29 chr4 163440046 163440239 -38888108 - L1ME LINE L1 -419 5702 5491 262 278 0 42 chr4 163440716 163440788 -38887559 - MIR3 SINE MIR -33 175 107 1022 164 0 91 chr4 163441535 163441785 -38886562 - AluJo SINE Alu 0 314 85 2439 66 28 0 chr4 163441954 163442271 -38886076 + THE1A LTR MaLR 1 326 -29 399 274 0 29 chr4 163443142 163443244 -38885103 - L2 LINE L2 -19 3294 3196 180 111 0 0 chr4 163443418 163443445 -38884902 + (A)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr4 163444013 163444034 -38884313 + AT_rich Low_complexity Low_complexity 1 21 0 411 247 0 31 chr4 163444043 163444209 -38884138 - MIR SINE MIR -10 252 20 543 268 0 16 chr4 163445061 163445188 -38883159 + MIR SINE MIR 25 149 -113 1067 251 22 0 chr4 163546715 163546938 -38781409 + MER82 DNA MER2_type 425 652 -1 1330 221 63 8 chr4 163546951 163547318 -38781029 + L1M4 LINE L1 4352 4738 -1408 2320 185 24 16 chr4 163547322 163547748 -38780599 - Tigger2a DNA MER2_type 0 434 6 306 296 139 47 chr4 163548161 163548333 -38780014 + L1ME3A LINE L1 5963 6150 -20 2323 133 38 0 chr4 163549063 163549431 -38778916 - LOR1a LTR ERV1 -115 382 1 458 241 65 9 chr4 163549431 163549538 -38778809 - MER65C LTR ERV1 -346 115 3 198 194 16 97 chr4 163550562 163550624 -38777723 + L2 LINE L2 3215 3271 -1 1971 152 0 7 chr4 163550652 163550954 -38777393 + AluJb SINE Alu 1 300 -12 975 128 7 14 chr4 163551170 163551311 -38777036 + FRAM SINE Alu 17 156 -20 1109 141 0 17 chr4 163551531 163551708 -38776639 - AluSg/x SINE Alu -18 294 121 1797 151 24 24 chr4 163551847 163552145 -38776202 - AluJo SINE Alu -10 302 5 497 123 0 0 chr4 163552174 163552239 -38776108 - AluJ/FLAM SINE Alu -247 65 1 1862 172 0 0 chr4 163552242 163552533 -38775814 - AluJb SINE Alu -21 291 1 1116 171 76 9 chr4 163552538 163552844 -38775503 - L1M2 LINE L1 -749 5397 5158 2313 123 82 53 chr4 163553016 163553259 -38775088 - MSTA LTR MaLR 0 428 167 2345 94 3 0 chr4 163553259 163553558 -38774789 + AluSp SINE Alu 1 300 -13 2313 123 82 53 chr4 163553558 163553730 -38774617 - MSTA LTR MaLR -261 167 1 828 304 64 38 chr4 163553738 163554162 -38774185 + L2 LINE L2 2365 2799 -515 286 135 154 0 chr4 163554172 163554224 -38774123 - U6 snRNA snRNA 0 107 48 1878 125 23 0 chr4 163554466 163554730 -38773617 - AluSx SINE Alu -38 274 5 1977 207 32 144 chr4 163555007 163555022 -38773325 + L1M4 LINE L1 3600 3615 -2531 2218 129 0 0 chr4 163555022 163555325 -38773022 + AluSx SINE Alu 1 303 -9 1977 207 32 144 chr4 163555325 163555579 -38772768 + L1M4 LINE L1 3615 3896 -2250 1501 154 54 57 chr4 163555579 163555877 -38772470 + AluJb SINE Alu 5 301 -11 1977 207 32 144 chr4 163555877 163556428 -38771919 + L1M4 LINE L1 3896 4329 -1817 326 309 62 76 chr4 163556547 163556757 -38771590 - L2 LINE L2 -115 3157 2951 2298 109 0 0 chr4 163556959 163557261 -38771086 - AluSg SINE Alu -8 302 1 2196 112 0 13 chr4 163557335 163557649 -38770698 - AluSx SINE Alu -2 310 1 427 235 38 23 chr4 163558674 163558806 -38769541 - HAL1 LINE L1 -694 1813 1680 1972 136 13 13 chr4 163559018 163559320 -38769027 + AluSx SINE Alu 3 304 -8 302 250 167 10 chr4 163559850 163559946 -38768401 + L2 LINE L2 3195 3305 -8 2243 109 16 0 chr4 163559979 163560282 -38768065 + AluSq SINE Alu 1 308 -5 2744 13 0 13 chr4 163560863 163561170 -38767177 + AluYa5 SINE Alu 1 303 -8 302 294 11 0 chr4 163561762 163561854 -38766493 - MIR SINE MIR -68 194 102 192 204 20 41 chr4 163561833 163561882 -38766465 - L2 LINE L2 -3179 135 88 * 2884 217 88 43 chr4 163561900 163562711 -38765636 - L1ME1 LINE L1 -18 6148 5302 4581 213 65 24 chr4 163562851 163563175 -38765172 - L1M4 LINE L1 -5378 1164 855 261 0 0 0 chr4 163563175 163563204 -38765143 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4581 213 65 24 chr4 163563204 163563996 -38764351 - L1M4 LINE L1 -5687 855 2 751 214 0 8 chr4 163564047 163564178 -38764169 + FLAM_A SINE Alu 1 130 -3 21 36 0 0 chr4 163564657 163564685 -38763662 + AT_rich Low_complexity Low_complexity 1 28 0 2052 56 28 0 chr4 163565134 163565386 -38762961 - L1PA5 LINE L1 0 6154 5896 268 283 172 10 chr4 163565386 163565485 -38762862 + MIR3 SINE MIR 41 155 -53 646 197 13 2 chr4 163565495 163565648 -38762699 + MER58A DNA MER1_type 37 223 -1 253 318 71 0 chr4 163565958 163566043 -38762304 - MLT1I LTR MaLR -204 205 115 812 107 107 0 chr4 163566357 163566469 -38761878 - AluSg SINE Alu -185 125 2 551 222 144 42 chr4 163566772 163566939 -38761408 - MER5A DNA MER1_type 0 189 6 597 174 37 9 chr4 163567324 163567433 -38760914 - MER81 DNA DNA -2 112 1 352 200 45 45 chr4 163567521 163567582 -38760765 - L1ME3A LINE L1 -284 5886 5823 2175 115 0 3 chr4 163567582 163567877 -38760470 - AluSx SINE Alu -16 296 3 352 200 45 45 chr4 163567877 163567925 -38760422 - L1ME3A LINE L1 -346 5824 5777 547 257 20 75 chr4 163567940 163568232 -38760115 - L1ME1 LINE L1 -848 5298 5023 184 333 18 0 chr4 163568355 163568412 -38759935 + L2 LINE L2 3248 3305 -8 453 287 25 8 chr4 163568575 163568697 -38759650 - MIR SINE MIR -92 170 47 363 235 46 65 chr4 163568850 163569003 -38759344 - MIR SINE MIR -50 212 63 1623 138 8 8 chr4 163569287 163569540 -38758807 + AluSq SINE Alu 1 253 -60 1038 189 85 66 chr4 163569642 163569680 -38758667 + MLT1F LTR MaLR 140 176 -366 1580 201 7 4 chr4 163569680 163569959 -38758388 + AluJb SINE Alu 1 280 -32 291 28 0 0 chr4 163569962 163569998 -38758349 + (CAA)n Simple_repeat Simple_repeat 2 37 0 1038 189 85 66 chr4 163569998 163570328 -38758019 + MLT1F LTR MaLR 177 542 0 250 286 71 0 chr4 163570467 163570551 -38757796 + MIR3 SINE MIR 112 201 -7 315 0 0 0 chr4 163571073 163571108 -38757239 + (GA)n Simple_repeat Simple_repeat 2 36 0 514 288 247 23 chr4 163572754 163573546 -38754801 - L2 LINE L2 -127 3186 2196 759 221 0 7 chr4 163573549 163573698 -38754649 + L1PB4 LINE L1 6006 6153 -3 212 274 197 0 chr4 163574514 163574631 -38753716 - L2 LINE L2 -781 2533 2394 448 215 0 13 chr4 163574635 163574714 -38753633 - FRAM SINE Alu -29 147 70 205 265 39 98 chr4 163575569 163575671 -38752676 - L2 LINE L2 -36 3236 3141 1635 178 28 3 chr4 163575863 163576150 -38752197 - AluJo SINE Alu -18 294 1 220 109 22 22 chr4 163576171 163576217 -38752130 + (ATG)n Simple_repeat Simple_repeat 3 48 0 2227 115 0 7 chr4 163576399 163576732 -38751615 + AluSx SINE Alu 3 312 0 614 198 45 9 chr4 163576753 163576864 -38751483 + AluSq/x SINE Alu 6 120 -193 9484 26 10 214 chr4 163577003 163578766 -38749581 + SVA Other Other 7 1416 0 298 268 69 0 chr4 163578939 163579027 -38749320 - MIR SINE MIR -68 140 60 4886 247 176 13 chr4 163579129 163579265 -38749082 - L2 LINE L2 0 3313 3201 2442 78 0 3 chr4 163579265 163579595 -38748752 - AluY SINE Alu 0 311 1 4886 247 176 13 chr4 163579595 163581518 -38746829 - L2 LINE L2 -112 3201 912 2369 80 10 3 chr4 163582485 163582787 -38745560 - AluSg SINE Alu -6 304 1 229 250 31 31 chr4 163582901 163582965 -38745382 - L2 LINE L2 -7 3265 3202 1767 202 78 2 chr4 163583135 163583531 -38744816 + L1MB7 LINE L1 4853 5278 -868 2148 77 0 115 chr4 163583558 163583907 -38744440 + AluSq SINE Alu 1 309 -4 1484 159 155 0 chr4 163583907 163584197 -38744150 + L1MB7 LINE L1 5850 6184 0 222 163 61 0 chr4 163584651 163584700 -38743647 + L2 LINE L2 3262 3313 0 1269 181 12 20 chr4 163585022 163585271 -38743076 + AluJo SINE Alu 63 309 -3 307 271 31 0 chr4 163585389 163585485 -38742862 + MLT1H LTR MaLR 1 99 -450 933 155 0 0 chr4 163585490 163585632 -38742715 + FRAM SINE Alu 26 167 -9 1142 245 68 93 chr4 163585647 163585772 -38742575 + MLT1H LTR MaLR 116 243 -306 2147 97 121 104 chr4 163585772 163586193 -38742154 - MSTA LTR MaLR 0 428 1 1142 245 68 93 chr4 163586193 163586496 -38741851 + MLT1H LTR MaLR 243 533 -16 331 331 43 14 chr4 163586496 163586753 -38741594 - LTR16A LTR ERVL 0 464 169 424 340 28 9 chr4 163587465 163587680 -38740667 - ERVL LTR ERVL -903 4861 4643 410 218 13 13 chr4 163587842 163587920 -38740427 - FLAM_A SINE Alu -53 79 2 1338 234 36 0 chr4 163587920 163588228 -38740119 - HAL1 LINE L1 -878 1629 1311 871 195 13 143 chr4 163588212 163588519 -38739828 - HAL1 LINE L1 -1610 897 631 * 244 296 72 86 chr4 163588609 163588761 -38739586 - HAL1 LINE L1 -2049 458 309 374 222 68 0 chr4 163588789 163588962 -38739385 - HAL1 LINE L1 -2285 222 4 202 323 62 0 chr4 163588992 163589057 -38739290 - L2 LINE L2 0 3272 3204 320 246 0 0 chr4 163589534 163589603 -38738744 - MIR SINE MIR -10 252 184 2394 164 44 2 chr4 163590860 163591269 -38737078 + Tigger1 DNA MER2_type 1 426 -1992 1042 169 0 72 chr4 163591272 163591331 -38737016 + AluJb SINE Alu 89 151 -161 2245 118 0 0 chr4 163591331 163591628 -38736719 + AluSq SINE Alu 1 297 -16 1042 169 0 72 chr4 163591628 163591775 -38736572 + AluJb SINE Alu 151 280 -32 207 0 0 0 chr4 163591778 163591801 -38736546 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 3646 95 48 89 chr4 163591818 163591972 -38736375 + Tigger1 DNA MER2_type 418 577 -1841 1518 158 13 68 chr4 163591972 163592282 -38736065 + AluJb SINE Alu 1 293 -19 3646 95 48 89 chr4 163592282 163592704 -38735643 + Tigger1 DNA MER2_type 577 966 -1452 2268 99 0 0 chr4 163592704 163593006 -38735341 - AluSc SINE Alu -7 302 1 3646 95 48 89 chr4 163593006 163593094 -38735253 + Tigger1 DNA MER2_type 966 1056 -1362 513 214 0 0 chr4 163593195 163593284 -38735063 - AluS SINE Alu -215 97 9 1379 231 34 30 chr4 163593292 163593785 -38734562 - L1M4 LINE L1 -2562 3584 3087 1644 178 51 3 chr4 163593785 163594077 -38734270 - AluJo SINE Alu -6 306 1 1379 231 34 30 chr4 163594077 163594090 -38734257 - L1M4 LINE L1 -3059 3087 3076 1318 159 5 5 chr4 163594126 163594333 -38734014 - AluJo SINE Alu -33 279 73 1542 203 131 0 chr4 163594333 163594707 -38733640 - L1M4 LINE L1 -3060 3086 2664 2892 229 72 62 chr4 163594735 163596119 -38732228 + L1ME LINE L1 25 1406 -4674 1422 164 0 45 chr4 163596212 163596481 -38731866 + AluJo SINE Alu 47 303 -9 358 206 128 29 chr4 163596520 163596622 -38731725 - MIR SINE MIR -67 141 30 2018 286 94 72 chr4 163598236 163598291 -38730056 - HAL1 LINE L1 -10 2497 2445 270 0 0 0 chr4 163598291 163598321 -38730026 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2018 286 94 72 chr4 163598321 163599205 -38729142 - HAL1 LINE L1 -62 2445 1538 1099 131 5 47 chr4 163599205 163599396 -38728951 - FRAM SINE Alu 0 176 1 1104 221 148 25 chr4 163599449 163599774 -38728573 - MLT1F1 LTR MaLR 0 567 203 472 272 113 42 chr4 163600163 163600402 -38727945 + L2 LINE L2 3033 3288 -25 1255 287 69 10 chr4 163601029 163601437 -38726910 - LTR16A LTR ERVL -3 447 16 2498 58 0 0 chr4 163601610 163601927 -38726420 + AluSx SINE Alu 1 317 0 1663 174 14 3 chr4 163601932 163602214 -38726133 + AluJo SINE Alu 1 285 -27 656 262 55 39 chr4 163602569 163602825 -38725522 + MIR SINE MIR 3 262 0 2365 99 0 16 chr4 163603121 163603435 -38724912 - AluSg SINE Alu -1 309 1 1926 128 3 56 chr4 163603439 163603759 -38724588 - AluSx SINE Alu -9 303 1 277 277 208 0 chr4 163604044 163604174 -38724173 + MIR3 SINE MIR 49 205 -3 379 163 81 0 chr4 163604869 163604955 -38723392 - L1MC2 LINE L1 -5 6339 6247 2509 157 55 2 chr4 163604957 163605408 -38722939 - L1MC3 LINE L1 -102 7683 7209 261 231 0 15 chr4 163605408 163605473 -38722874 + MER31A LTR ERV1 343 406 -79 588 228 6 51 chr4 163605491 163605649 -38722698 - L1MC3 LINE L1 -572 7213 7063 703 219 0 0 chr4 163605653 163605776 -38722571 - FLAM_A SINE Alu -6 127 5 700 294 40 16 chr4 163606126 163606329 -38722018 - MIR SINE MIR 0 262 50 706 257 122 91 chr4 163606329 163606823 -38721524 + MLT1J LTR MaLR 1 509 -2 700 294 40 16 chr4 163606823 163606871 -38721476 - MIR SINE MIR -212 50 5 1293 147 0 5 chr4 163607818 163608015 -38720332 + AluJo SINE Alu 86 281 -31 282 29 0 0 chr4 163608018 163608053 -38720294 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 242 217 17 17 chr4 163608248 163608308 -38720039 - MER5A DNA MER1_type -1 188 129 1148 128 12 0 chr4 163608346 163608510 -38719837 - AluSq SINE Alu -13 300 135 218 54 0 27 chr4 163608510 163608547 -38719800 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1946 111 10 24 chr4 163608547 163608836 -38719511 - AluSx SINE Alu -27 285 1 339 169 15 0 chr4 163608836 163608901 -38719446 - MER5A DNA MER1_type -115 74 9 334 320 0 16 chr4 163608939 163609067 -38719280 - MER5B DNA MER1_type -6 172 47 1254 152 0 56 chr4 163609233 163609250 -38719097 - AluJo SINE Alu -10 302 286 3119 119 22 34 chr4 163609250 163609600 -38718747 - L1MA9 LINE L1 -1 6311 5967 1692 166 27 30 chr4 163609600 163609896 -38718451 - AluJb SINE Alu -17 295 1 3119 119 22 34 chr4 163609896 163610049 -38718298 - L1MA9 LINE L1 -345 5967 5814 1254 152 0 56 chr4 163610049 163610262 -38718085 - AluJo SINE Alu -26 286 85 266 79 0 0 chr4 163610262 163610300 -38718047 - L1MA9 LINE L1 -506 5828 5791 284 123 53 18 chr4 163610300 163610357 -38717990 + LTR66 LTR ERVL 394 452 -158 497 26 0 0 chr4 163610357 163610421 -38717926 + L1M3 LINE L1 5675 5738 -561 6305 184 12 31 chr4 163610521 163611311 -38717036 - L1 LINE L1 -2609 3537 2784 2417 60 0 0 chr4 163611311 163611594 -38716753 - AluY SINE Alu -19 292 10 6305 184 12 31 chr4 163611594 163612205 -38716142 - L1 LINE L1 -3362 2784 2163 603 219 146 30 chr4 163612395 163612485 -38715862 - MER5A DNA MER1_type -3 186 108 1520 160 49 33 chr4 163612485 163612792 -38715555 - AluJb SINE Alu 0 312 1 603 219 146 30 chr4 163612792 163612865 -38715482 - MER5A DNA MER1_type -81 108 4 1868 151 7 26 chr4 163612884 163613189 -38715158 + AluSx SINE Alu 1 299 -13 513 280 39 2 chr4 163613196 163613354 -38714993 + MER20B DNA MER1_type 37 202 -17 4616 220 98 39 chr4 163613532 163613710 -38714637 + L1MC4 LINE L1 6461 6627 -1415 213 39 0 0 chr4 163613710 163613736 -38714611 + (TG)n Simple_repeat Simple_repeat 2 27 0 4616 220 98 39 chr4 163613736 163614934 -38713413 + L1MC4 LINE L1 6627 7918 -124 255 125 0 0 chr4 163614934 163614974 -38713373 + (CATA)n Simple_repeat Simple_repeat 1 40 0 2499 177 19 14 chr4 163615307 163615731 -38712616 + MSTB LTR MaLR 1 426 0 549 348 18 18 chr4 163615836 163616060 -38712287 + MLT1K LTR MaLR 143 366 -222 2163 118 0 13 chr4 163616092 163616396 -38711951 + AluSx SINE Alu 1 300 -12 2726 130 132 0 chr4 163617126 163617558 -38710789 - MER1A DNA MER1_type -40 489 1 685 146 9 0 chr4 163617574 163617684 -38710663 + MLT1D LTR MaLR 395 505 0 490 261 60 0 chr4 163617801 163617935 -38710412 - MIR SINE MIR -36 226 85 198 316 26 0 chr4 163617995 163618071 -38710276 - MIR SINE MIR -6 256 179 2176 110 0 0 chr4 163618284 163618575 -38709772 - AluSx SINE Alu -21 291 1 21 0 0 0 chr4 163619451 163619472 -38708875 + AT_rich Low_complexity Low_complexity 1 21 0 2064 92 71 7 chr4 163619598 163619879 -38708468 + AluSg SINE Alu 1 299 -11 443 214 20 0 chr4 163620535 163620633 -38707714 - AluSg/x SINE Alu -3 309 210 2295 100 0 3 chr4 163620812 163621103 -38707244 - AluSg SINE Alu -20 290 1 635 221 9 94 chr4 163621580 163621730 -38706617 + MIR SINE MIR 65 193 -69 2222 181 93 9 chr4 163621730 163622161 -38706186 - MLT1C LTR MaLR 0 467 1 635 221 9 94 chr4 163622161 163622223 -38706124 + MIR SINE MIR 193 259 -3 233 354 85 12 chr4 163622219 163622301 -38706046 - L2 LINE L2 -18 3295 3208 * 487 217 17 92 chr4 163622334 163622454 -38705893 + MER81 DNA DNA 2 112 -2 1300 271 163 9 chr4 163622509 163622952 -38705395 + MLT1J LTR MaLR 1 511 0 2118 95 3 33 chr4 163623059 163623363 -38704984 + AluSc SINE Alu 1 295 -14 244 208 38 0 chr4 163623424 163623477 -38704870 + L1MEd LINE L1 126 180 -5939 478 230 0 0 chr4 163623504 163623604 -38704743 - MIR SINE MIR -43 219 120 549 243 6 35 chr4 163623606 163623779 -38704568 + L1MEd LINE L1 1082 1249 -4870 931 285 20 8 chr4 163623810 163624056 -38704291 - MIR SINE MIR -1 261 13 1196 167 9 29 chr4 163624145 163624355 -38703992 + MER3 DNA MER1_type 4 209 0 2113 122 3 10 chr4 163624520 163624824 -38703523 - AluSx SINE Alu -10 302 1 487 272 70 0 chr4 163624916 163625074 -38703273 - L2 LINE L2 -1194 2120 1952 1589 219 114 18 chr4 163625261 163625708 -38702639 - MLT1E2 LTR MaLR 0 626 137 384 263 0 0 chr4 163625971 163626051 -38702296 - L2 LINE L2 -19 3294 3215 1079 182 0 0 chr4 163626273 163626449 -38701898 - FRAM SINE Alu 0 176 1 2434 85 0 0 chr4 163626901 163627206 -38701141 + AluSc SINE Alu 1 305 -4 969 36 0 0 chr4 163627345 163627457 -38700890 + AluY SINE Alu 183 294 -17 1511 138 67 79 chr4 163627457 163627813 -38700534 + MLT1B LTR MaLR 33 384 -6 2535 68 0 0 chr4 163628931 163629240 -38699107 - AluY SINE Alu -2 309 1 563 236 76 49 chr4 163629413 163629638 -38698709 + L1MC5 LINE L1 6988 7218 -743 337 258 110 42 chr4 163629728 163630000 -38698347 + L1MC4 LINE L1 7242 7634 -408 240 256 33 56 chr4 163630225 163630315 -38698032 + MIR3 SINE MIR 85 172 -36 1201 152 0 5 chr4 163630900 163631091 -38697256 - MER20 DNA MER1_type 0 219 30 1733 193 0 10 chr4 163631323 163631619 -38696728 + AluJo SINE Alu 1 293 -19 1050 155 126 0 chr4 163631772 163631978 -38696369 + Tigger3b DNA MER2_type 1 232 -999 2208 133 79 0 chr4 163631984 163632375 -38695972 - MSTA LTR MaLR -6 422 1 5909 118 15 24 chr4 163632375 163632945 -38695402 + Tigger3b DNA MER2_type 228 787 -2241 7794 18 1 1 chr4 163632945 163634108 -38694239 + L1PA3 LINE L1 4993 6155 0 5909 118 15 24 chr4 163634108 163634541 -38693806 + Tigger3b DNA MER2_type 787 1222 -9 1846 140 0 54 chr4 163635198 163635512 -38692835 - AluJb SINE Alu -15 297 1 487 302 68 54 chr4 163635526 163635748 -38692599 + MIR SINE MIR 32 256 -6 2094 131 0 31 chr4 163636664 163636984 -38691363 + AluSx SINE Alu 1 310 -2 219 203 0 94 chr4 163637043 163637107 -38691240 + L3 LINE CR1 1519 1576 -1 21 0 0 0 chr4 163637463 163637484 -38690863 + AT_rich Low_complexity Low_complexity 1 21 0 2921 209 62 8 chr4 163638059 163638979 -38689368 + L1MB7 LINE L1 4316 5394 -771 3021 137 57 64 chr4 163638981 163639165 -38689182 + L1MB7 LINE L1 5508 5692 -492 769 188 0 0 chr4 163639165 163639298 -38689049 + FLAM_A SINE Alu 1 133 0 3021 137 57 64 chr4 163639298 163639334 -38689013 + L1MB7 LINE L1 5692 5727 -457 1270 220 54 18 chr4 163639334 163639611 -38688736 - AluJo SINE Alu -25 287 1 3021 137 57 64 chr4 163639611 163640062 -38688285 + L1MB7 LINE L1 5727 6175 -9 1784 164 37 3 chr4 163641393 163641692 -38686655 + AluJo SINE Alu 1 309 -3 2141 99 0 0 chr4 163642214 163642507 -38685840 + AluSx SINE Alu 11 303 0 2535 40 0 10 chr4 163642555 163642853 -38685494 + AluY SINE Alu 1 295 -16 467 295 85 84 chr4 163642917 163643388 -38684959 + L2 LINE L2 2604 3081 -191 222 318 206 0 chr4 163643581 163643688 -38684659 + L2 LINE L2 3136 3264 -8 1022 276 91 35 chr4 163644013 163644664 -38683683 - L2 LINE L2 -7 3306 2624 2351 94 3 3 chr4 163645122 163645430 -38682917 + AluSc SINE Alu 1 308 -1 240 170 0 0 chr4 163645492 163645539 -38682808 + L1MB8 LINE L1 6126 6172 -6 612 226 98 113 chr4 163646851 163647086 -38681261 - L2 LINE L2 -744 2570 2340 2332 172 17 72 chr4 163647086 163647548 -38680799 + MLT1D LTR MaLR 3 434 -71 2260 88 31 0 chr4 163647548 163647842 -38680505 - AluSc SINE Alu -6 303 1 2332 172 17 72 chr4 163647842 163647907 -38680440 + MLT1D LTR MaLR 434 501 -4 612 226 98 113 chr4 163647907 163648008 -38680339 - L2 LINE L2 -974 2340 2239 2580 46 3 0 chr4 163648665 163648968 -38679379 + AluSp SINE Alu 1 304 -9 1548 110 22 4 chr4 163649286 163649513 -38678834 + AluSp SINE Alu 1 231 -82 467 239 123 0 chr4 163649627 163649782 -38678565 + AluSq SINE Alu 140 313 0 6934 130 69 1 chr4 163649782 163650954 -38677393 + Tigger1 DNA MER2_type 1167 2418 0 1915 134 14 0 chr4 163651294 163651585 -38676762 + AluSx SINE Alu 1 295 -17 302 360 109 24 chr4 163651885 163651940 -38676407 + L2 LINE L2 3044 3093 -179 5064 53 88 118 chr4 163651940 163652791 -38675556 - LTR12 LTR ERV1 0 826 1 302 360 109 24 chr4 163652791 163652946 -38675401 + L2 LINE L2 3093 3272 0 239 133 22 0 chr4 163652946 163652991 -38675356 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 3014 74 7 0 chr4 163653580 163653984 -38674363 - L1PA8 LINE L1 -9 6163 5757 1540 161 11 35 chr4 163653985 163654271 -38674076 + AluJo SINE Alu 27 305 -7 184 216 27 0 chr4 163654735 163654772 -38673575 + MIR SINE MIR 217 254 -8 809 200 0 0 chr4 163655857 163655997 -38672350 - FLAM_C SINE Alu -3 140 1 1962 125 0 56 chr4 163656011 163656316 -38672031 - AluSx SINE Alu -24 288 1 1775 168 28 0 chr4 163656482 163656768 -38671579 + AluJb SINE Alu 1 294 -18 307 244 0 13 chr4 163656983 163657061 -38671286 + MER20 DNA MER1_type 6 82 -137 333 0 0 0 chr4 163657136 163657173 -38671174 + (TC)n Simple_repeat Simple_repeat 2 38 0 207 0 0 0 chr4 163657172 163657195 -38671152 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 36 53 0 0 chr4 163658200 163658257 -38670090 + AT_rich Low_complexity Low_complexity 1 57 0 285 75 0 0 chr4 163658696 163658736 -38669611 + (CA)n Simple_repeat Simple_repeat 1 40 0 297 312 52 0 chr4 163658784 163658861 -38669486 - L2 LINE L2 -36 3236 3156 21 57 0 0 chr4 163659520 163659555 -38668792 + AT_rich Low_complexity Low_complexity 1 35 0 194 248 257 9 chr4 163659867 163659976 -38668371 - MIR SINE MIR 0 262 127 279 228 21 124 chr4 163660210 163660355 -38667992 - MLT1K LTR MaLR -5 583 454 369 62 0 0 chr4 163660402 163660450 -38667897 + (TG)n Simple_repeat Simple_repeat 2 49 0 379 296 0 9 chr4 163660482 163660590 -38667757 - MLT1K LTR MaLR -465 123 17 245 250 0 125 chr4 163660723 163660811 -38667536 - MER5B DNA MER1_type -5 173 97 490 75 0 9 chr4 163661289 163661502 -38666845 + AluY SINE Alu 1 293 -16 245 261 45 19 chr4 163662205 163662362 -38665985 + L1ME LINE L1 5724 5884 -237 198 0 0 0 chr4 163662406 163662428 -38665919 + (CTTG)n Simple_repeat Simple_repeat 1 22 0 878 181 152 29 chr4 163662428 163662638 -38665709 - AluJo SINE Alu -31 281 46 369 259 104 33 chr4 163662648 163662860 -38665487 - L1ME4a LINE L1 -189 5932 5706 572 215 0 21 chr4 163662988 163663132 -38665215 - L1ME4a LINE L1 -1377 4769 4629 544 170 9 45 chr4 163663132 163663244 -38665103 + AluJo SINE Alu 112 219 -93 1208 100 0 0 chr4 163663347 163663497 -38664850 + AluSq/x SINE Alu 1 150 -163 584 154 166 6 chr4 163663512 163663681 -38664666 - L1ME4a LINE L1 -2099 4047 3852 2581 56 0 3 chr4 163663681 163663985 -38664362 + AluY SINE Alu 1 303 -8 255 61 0 0 chr4 163664025 163664058 -38664289 + (CA)n Simple_repeat Simple_repeat 2 34 0 559 176 20 0 chr4 163664076 163664178 -38664169 - L1PB3 LINE L1 -7 6147 6044 400 183 67 0 chr4 163664178 163664282 -38664065 - L1M4 LINE L1 -2058 4088 3978 972 141 47 0 chr4 163664304 163664474 -38663873 - L1PB3 LINE L1 -119 6035 5858 2075 107 0 68 chr4 163664474 163664782 -38663565 + AluSx SINE Alu 1 287 -25 25 0 0 0 chr4 163664782 163664807 -38663540 + AT_rich Low_complexity Low_complexity 1 25 0 1143 236 85 3 chr4 163664820 163665185 -38663162 - L1M4 LINE L1 -2292 3854 3460 495 283 5 27 chr4 163665177 163665364 -38662983 - L1MEc LINE L1 -6191 205 23 * 217 148 37 19 chr4 163666285 163666330 -38662017 + (CCAA)n Simple_repeat Simple_repeat 1 49 -6 2110 133 0 13 chr4 163666330 163666632 -38661715 - AluSx SINE Alu -14 298 1 217 148 37 19 chr4 163666632 163666640 -38661707 + (CCAA)n Simple_repeat Simple_repeat 49 55 0 1692 180 8 30 chr4 163667292 163667654 -38660693 + L1MB3 LINE L1 5829 6182 -1 21 0 0 0 chr4 163667682 163667703 -38660644 + AT_rich Low_complexity Low_complexity 1 21 0 327 244 199 26 chr4 163667703 163667859 -38660488 - L1ME4a LINE L1 -5 6116 5934 1962 173 0 0 chr4 163667937 163668237 -38660110 - AluSx SINE Alu -12 300 1 318 188 0 35 chr4 163668626 163668711 -38659636 - L1MC5 LINE L1 -47 7914 7833 405 0 0 0 chr4 163668995 163669040 -38659307 + (TG)n Simple_repeat Simple_repeat 2 46 0 1754 161 0 31 chr4 163669041 163669333 -38659014 - AluJo SINE Alu -29 283 1 236 186 17 0 chr4 163669497 163669556 -38658791 + (TA)n Simple_repeat Simple_repeat 2 61 0 350 316 118 36 chr4 163669666 163669998 -38658349 - L1ME4a LINE L1 -307 5814 5456 207 0 0 0 chr4 163671136 163671159 -38657188 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 240 289 40 13 chr4 163671216 163671292 -38657055 - MIR SINE MIR -172 90 13 797 199 0 0 chr4 163671705 163671836 -38656511 + FLAM_A SINE Alu 1 131 -2 656 231 2 13 chr4 163672283 163672458 -38655889 + L1MB8 LINE L1 5977 6157 -15 245 276 31 56 chr4 163672615 163672811 -38655536 + L1M4 LINE L1 3545 3735 -2411 22 35 0 0 chr4 163672817 163672846 -38655501 + AT_rich Low_complexity Low_complexity 1 29 0 429 263 10 0 chr4 163672912 163673011 -38655336 + MIR SINE MIR 2 101 -161 275 245 112 41 chr4 163673200 163673298 -38655049 + MIR SINE MIR 124 228 -34 21 0 0 0 chr4 163673325 163673346 -38655001 + AT_rich Low_complexity Low_complexity 1 21 0 435 296 123 9 chr4 163673359 163673579 -38654768 - L1ME LINE L1 -395 5726 5482 2108 101 10 7 chr4 163674067 163674364 -38653983 + AluSx SINE Alu 1 298 -14 2148 103 0 4 chr4 163674794 163675103 -38653244 - AluY SINE Alu 0 312 5 261 0 0 0 chr4 163675740 163675769 -38652578 + (TTG)n Simple_repeat Simple_repeat 2 30 0 429 271 139 7 chr4 163677456 163677607 -38650740 + MIR SINE MIR 33 203 -59 1816 144 29 0 chr4 163677769 163678047 -38650300 - AluJb SINE Alu -15 297 12 422 78 16 0 chr4 163678212 163678276 -38650071 - L1MB7 LINE L1 -9 6175 6111 735 138 37 0 chr4 163678276 163678385 -38649962 + AluJb SINE Alu 3 115 -197 263 27 0 27 chr4 163678385 163678422 -38649925 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 2796 153 42 86 chr4 163678423 163678678 -38649669 - L1MB8 LINE L1 -70 6108 5843 1693 140 4 30 chr4 163678678 163678943 -38649404 - AluJo SINE Alu -31 281 24 2796 153 42 86 chr4 163678943 163679394 -38648953 - L1MB8 LINE L1 -335 5843 5433 21 36 0 0 chr4 163679410 163679438 -38648909 + AT_rich Low_complexity Low_complexity 1 28 0 1768 158 7 33 chr4 163679543 163679846 -38648501 - AluJo SINE Alu -17 295 1 624 228 8 0 chr4 163679862 163679985 -38648362 - FLAM_C SINE Alu -19 124 1 219 315 188 20 chr4 163680636 163680785 -38647562 - L2 LINE L2 -11 3302 3129 619 298 73 8 chr4 163682240 163682485 -38645862 - MIR SINE MIR -1 261 1 2500 110 81 142 chr4 163682705 163683541 -38644806 - pTR5 LTR ERV1 -143 2295 1 708 194 82 47 chr4 163683620 163683899 -38644448 - pTR5 LTR ERV1 -1410 1028 740 2128 123 0 3 chr4 163684174 163684466 -38643881 - AluSx SINE Alu -21 291 1 225 229 43 14 chr4 163684476 163684546 -38643801 + MER103 DNA DNA 2 73 -93 1585 124 48 0 chr4 163684667 163684916 -38643431 + L1PA15 LINE L1 5892 6152 -13 1901 133 23 29 chr4 163684919 163685228 -38643119 + AluJb SINE Alu 1 307 -5 1070 189 128 61 chr4 163686213 163686572 -38641775 + MLT1D LTR MaLR 1 383 -122 2819 127 121 0 chr4 163686573 163687045 -38641302 - MER1A DNA MER1_type 0 529 1 629 146 9 0 chr4 163687061 163687171 -38641176 + MLT1D LTR MaLR 395 505 0 501 266 58 0 chr4 163687283 163687422 -38640925 - MIR SINE MIR -31 231 85 201 316 26 0 chr4 163687482 163687558 -38640789 - MIR SINE MIR -6 256 179 2168 110 0 0 chr4 163687771 163688062 -38640285 - AluSx SINE Alu -21 291 1 21 0 0 0 chr4 163688938 163688959 -38639388 + AT_rich Low_complexity Low_complexity 1 21 0 2081 89 71 7 chr4 163689085 163689366 -38638981 + AluSg SINE Alu 1 299 -11 2086 146 0 7 chr4 163690025 163690333 -38638014 - AluSx SINE Alu -6 306 1 204 40 0 0 chr4 163690442 163690467 -38637880 + (TG)n Simple_repeat Simple_repeat 1 25 0 2015 138 0 52 chr4 163690792 163691119 -38637228 + AluJo SINE Alu 1 310 -2 689 207 60 7 chr4 163693172 163693322 -38635025 - MER20 DNA MER1_type 0 219 62 407 232 5 82 chr4 163694246 163694453 -38633894 - L1ME4a LINE L1 -3 6118 5928 314 264 28 19 chr4 163694961 163695067 -38633280 - L1ME1 LINE L1 -2 6164 6058 791 157 0 0 chr4 163695118 163695233 -38633114 + FLAM_A SINE Alu 1 115 -18 659 323 110 38 chr4 163695271 163695640 -38632707 + L3 LINE CR1 667 1075 -502 2422 71 0 0 chr4 163695640 163695936 -38632411 - AluY SINE Alu -15 296 1 659 323 110 38 chr4 163695936 163696012 -38632335 + L3 LINE CR1 1075 1144 -433 415 287 30 43 chr4 163696008 163696172 -38632175 - MER5B DNA MER1_type -16 162 1 * 821 223 39 9 chr4 163696383 163696612 -38631735 + L1MC4 LINE L1 6788 7023 -1019 457 229 14 135 chr4 163696615 163696912 -38631435 + L1MC4a LINE L1 7058 7318 -490 2129 120 27 7 chr4 163696997 163697296 -38631051 + AluSx SINE Alu 1 305 -7 25 0 0 0 chr4 163697419 163697444 -38630903 + AT_rich Low_complexity Low_complexity 1 25 0 425 292 76 21 chr4 163697472 163697708 -38630639 + L1MC4 LINE L1 7793 8041 -1 512 317 118 5 chr4 163697756 163697977 -38630370 + L3 LINE CR1 1311 1556 -21 275 253 149 35 chr4 163698229 163698316 -38630031 + L2 LINE L2 3176 3272 0 464 278 7 0 chr4 163699116 163699260 -38629087 + MER103 DNA DNA 12 156 -10 233 224 17 0 chr4 163699922 163699980 -38628367 + L1ME3A LINE L1 4881 4939 -1207 349 316 131 10 chr4 163700086 163700292 -38628055 + L1ME3A LINE L1 5079 5309 -837 226 310 35 21 chr4 163700308 163700453 -38627894 + L1ME3A LINE L1 5349 5495 -669 2080 148 60 5 chr4 163700485 163700870 -38627477 - MER31A LTR ERV1 -41 444 39 313 267 20 0 chr4 163700923 163701024 -38627323 + L1ME3A LINE L1 5844 5946 -224 484 233 85 0 chr4 163701025 163701154 -38627193 + MER58A DNA MER1_type 26 165 0 994 173 48 12 chr4 163701382 163701550 -38626797 + FRAM SINE Alu 1 169 -7 185 192 0 19 chr4 163701985 163702037 -38626310 + (TATG)n Simple_repeat Simple_repeat 2 52 0 361 254 130 23 chr4 163702041 163702261 -38626086 - L1MC4a LINE L1 -302 5819 5668 441 0 0 0 chr4 163703037 163703086 -38625261 + (CA)n Simple_repeat Simple_repeat 2 50 0 2322 68 7 17 chr4 163703835 163704131 -38624216 + AluSg SINE Alu 1 293 -17 684 129 0 0 chr4 163704742 163704843 -38623504 + AluJ/FLAM SINE Alu 1 101 -211 6356 43 2 158 chr4 163704858 163706101 -38622246 + SVA Other Other 432 1386 0 927 159 34 40 chr4 163706101 163706277 -38622070 + AluJo SINE Alu 123 297 -15 200 57 0 29 chr4 163706277 163706312 -38622035 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 1847 157 4 4 chr4 163706322 163706603 -38621744 - AluJb SINE Alu -31 281 1 11177 107 25 24 chr4 163706604 163707536 -38620811 - Tigger1 DNA MER2_type -332 2086 1149 1676 169 33 0 chr4 163707536 163707809 -38620538 + AluJo SINE Alu 16 297 -15 11177 107 25 24 chr4 163707809 163708679 -38619668 - Tigger1 DNA MER2_type -1269 1149 282 1465 97 5 0 chr4 163708679 163708865 -38619482 - AluSp SINE Alu -14 299 113 252 129 14 114 chr4 163708903 163708973 -38619374 - AluSp SINE Alu -171 132 70 459 202 76 25 chr4 163708973 163709092 -38619255 + AluJo/FRAM SINE Alu 180 304 -8 2336 77 10 3 chr4 163709265 163709564 -38618783 + AluY SINE Alu 1 301 -10 650 256 27 8 chr4 163709634 163709871 -38618476 - L1P4 LINE L1 -355 5806 5557 2238 117 0 3 chr4 163710386 163710684 -38617663 + AluSx SINE Alu 1 297 -15 684 263 11 6 chr4 163710737 163710912 -38617435 + MIR SINE MIR 5 180 -82 1184 198 14 126 chr4 163710926 163710989 -38617358 - MLT2C1 LTR ERVL -2 395 327 2494 64 0 0 chr4 163710989 163711284 -38617063 + AluY SINE Alu 1 295 -16 1184 198 14 126 chr4 163711284 163711296 -38617051 - MLT2C1 LTR ERVL -70 327 315 1984 148 7 3 chr4 163711296 163711599 -38616748 + AluSq SINE Alu 1 304 -9 1184 198 14 126 chr4 163711599 163711967 -38616380 - MLT2C1 LTR ERVL -82 315 1 689 257 62 43 chr4 163713998 163714208 -38614139 + MIR SINE MIR 1 214 -48 383 275 123 47 chr4 163714358 163714529 -38613818 - MIR3 SINE MIR -15 193 10 2315 110 0 3 chr4 163714844 163715145 -38613202 + AluSx SINE Alu 1 300 -12 207 217 150 33 chr4 163715410 163715470 -38612877 - L2 LINE L2 0 3313 3247 500 158 126 0 chr4 163715896 163716023 -38612324 + L1MC3 LINE L1 7643 7785 0 226 233 0 0 chr4 163717263 163717306 -38611041 + (TCTG)n Simple_repeat Simple_repeat 3 45 0 2240 105 0 0 chr4 163717616 163717912 -38610435 - AluY SINE Alu -15 296 1 2250 117 0 3 chr4 163717930 163718237 -38610110 - AluSq SINE Alu -7 306 1 2230 180 158 43 chr4 163719038 163719644 -38608703 + MER63C DNA MER1_type 255 930 0 318 106 0 0 chr4 163719702 163719749 -38608598 + (TATG)n Simple_repeat Simple_repeat 4 50 0 1878 168 25 30 chr4 163719750 163720113 -38608234 - MLT1A1 LTR MaLR -4 361 1 22 0 0 0 chr4 163720113 163720135 -38608212 + AT_rich Low_complexity Low_complexity 1 22 0 380 113 71 6 chr4 163721480 163721648 -38606699 + (TA)n Simple_repeat Simple_repeat 2 180 0 2187 105 0 7 chr4 163721648 163721943 -38606404 - AluSc SINE Alu -16 293 1 24 32 0 0 chr4 163722000 163722031 -38606316 + AT_rich Low_complexity Low_complexity 1 31 0 440 149 35 0 chr4 163722610 163722695 -38605652 - L1M3 LINE L1 -434 5717 5638 307 82 41 0 chr4 163722753 163722802 -38605545 - Alu SINE Alu -10 291 241 2775 103 6 6 chr4 163722810 163723323 -38605024 - L1P5 LINE L1 -498 5653 5139 1275 167 0 26 chr4 163723513 163723746 -38604601 - AluJo SINE Alu -5 307 81 192 77 0 0 chr4 163724017 163724043 -38604304 + (T)n Simple_repeat Simple_repeat 1 26 0 262 281 58 83 chr4 163724419 163724540 -38603807 + L2 LINE L2 3146 3263 -9 2434 86 0 6 chr4 163724565 163724878 -38603469 - AluY SINE Alu 0 311 1 1273 123 69 0 chr4 163724878 163725070 -38603277 - AluSg/x SINE Alu -10 302 94 22 0 0 0 chr4 163725850 163725872 -38602475 + AT_rich Low_complexity Low_complexity 1 22 0 212 247 0 82 chr4 163726081 163726154 -38602193 - L2 LINE L2 -70 3202 3136 328 299 78 0 chr4 163726704 163726871 -38601476 - MIR SINE MIR -10 252 73 2296 62 31 3 chr4 163726907 163727197 -38601150 + AluY SINE Alu 2 299 -12 2380 104 0 0 chr4 163727198 163727497 -38600850 + AluY SINE Alu 1 299 -12 1346 130 5 0 chr4 163727563 163727755 -38600592 - THE1B LTR MaLR -171 193 1 12139 80 2 4 chr4 163727755 163729337 -38599010 - THE1B-int LTR MaLR 0 1580 1 2171 131 35 41 chr4 163729337 163729703 -38598644 - THE1B LTR MaLR 0 364 1 859 208 36 59 chr4 163729703 163729730 -38598617 - MLT1C LTR MaLR -41 349 323 2456 83 0 6 chr4 163729730 163730043 -38598304 + AluY SINE Alu 1 311 0 859 208 36 59 chr4 163730043 163730382 -38597965 - MLT1C LTR MaLR -67 323 1 1218 143 67 22 chr4 163730536 163730760 -38597587 + MER46A DNA MER2_type 2 235 -1 1057 170 41 25 chr4 163730931 163731157 -38597190 - MSTD LTR MaLR 0 396 204 409 239 120 0 chr4 163731665 163731757 -38596590 - MLT1F1 LTR MaLR -94 473 371 2143 125 23 0 chr4 163731757 163732060 -38596287 + AluSx SINE Alu 1 310 -2 2332 59 3 14 chr4 163732201 163732489 -38595858 - AluY SINE Alu -26 285 1 243 329 89 0 chr4 163732586 163732665 -38595682 + L3 LINE CR1 1381 1466 -111 718 165 0 23 chr4 163732777 163732910 -38595437 + FLAM_C SINE Alu 1 130 -3 2219 107 40 0 chr4 163733134 163733432 -38594915 - AluSg SINE Alu 0 310 1 303 65 0 65 chr4 163733434 163733496 -38594851 + (TTTC)n Simple_repeat Simple_repeat 1 58 0 1671 143 28 56 chr4 163733496 163733817 -38594530 - AluJo SINE Alu 0 312 1 213 39 0 0 chr4 163733926 163733952 -38594395 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 29 0 0 0 chr4 163734311 163734340 -38594007 + AT_rich Low_complexity Low_complexity 1 29 0 380 275 43 45 chr4 163734389 163734522 -38593825 - MIR SINE MIR -61 147 46 1728 147 3 64 chr4 163734689 163735003 -38593344 - AluSx SINE Alu -17 295 1 1248 91 0 160 chr4 163735181 163735444 -38592903 + AluJb SINE Alu 86 306 -6 2367 88 7 3 chr4 163735486 163735792 -38592555 + AluSp SINE Alu 2 308 -5 189 147 0 0 chr4 163736014 163736048 -38592299 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 236 106 85 21 chr4 163736341 163736388 -38591959 - Alu SINE Alu -3 300 251 950 206 31 45 chr4 163736509 163736732 -38591615 - AluJo SINE Alu -92 220 1 651 229 220 63 chr4 163736754 163737060 -38591287 + L2 LINE L2 1827 2084 -1230 2212 107 0 7 chr4 163737060 163737360 -38590987 + AluSg SINE Alu 1 298 -12 651 229 220 63 chr4 163737360 163737608 -38590739 + L2 LINE L2 2084 2468 -846 1354 176 90 36 chr4 163737742 163738021 -38590326 - AluJo SINE Alu -18 294 1 195 316 53 0 chr4 163738098 163738174 -38590173 + L2 LINE L2 2942 3021 -292 2221 104 10 3 chr4 163738717 163739015 -38589332 - AluSx SINE Alu -12 300 1 2491 76 0 3 chr4 163739325 163739628 -38588719 - AluY SINE Alu -9 302 1 2530 68 0 6 chr4 163739628 163739939 -38588408 - AluY SINE Alu -2 309 1 365 281 0 0 chr4 163740149 163740231 -38588116 - L1M4 LINE L1 -2277 3869 3788 1379 108 10 21 chr4 163740236 163740430 -38587917 - AluSx SINE Alu -120 192 1 589 200 24 32 chr4 163740436 163740561 -38587786 - FLAM_A SINE Alu -9 124 1 2473 86 0 0 chr4 163740630 163740933 -38587414 - AluSx SINE Alu -9 303 1 1316 111 11 0 chr4 163740942 163741123 -38587224 - AluSx SINE Alu -129 183 1 330 188 24 47 chr4 163741124 163741209 -38587138 + MER74A LTR ERVL 14 96 -462 2201 98 0 23 chr4 163741209 163741514 -38586833 - AluSq SINE Alu -15 298 1 1815 151 7 11 chr4 163741514 163741798 -38586549 - AluSx SINE Alu -11 301 18 1165 179 18 9 chr4 163741822 163741986 -38586361 - AluJb SINE Alu -9 303 135 1983 149 0 13 chr4 163741986 163742287 -38586060 - AluSx SINE Alu -13 299 3 1165 179 18 9 chr4 163742287 163742340 -38586007 - AluJb SINE Alu -177 135 84 416 195 80 91 chr4 163742340 163742678 -38585669 + MER74B LTR ERVL 148 538 -20 327 206 0 0 chr4 163742735 163742798 -38585549 + MER5A DNA MER1_type 1 63 -126 2318 84 13 3 chr4 163742815 163743113 -38585234 + AluSq SINE Alu 1 301 -12 4709 80 42 36 chr4 163743229 163743388 -38584959 + LTR8 LTR ERV1 1 158 -533 1839 135 30 14 chr4 163743388 163743685 -38584662 + AluSg SINE Alu 1 302 -8 4709 80 42 36 chr4 163743685 163744212 -38584135 + LTR8 LTR ERV1 158 691 0 2091 105 62 60 chr4 163744256 163744714 -38583633 - MER4A LTR ERV1 0 664 82 2049 128 16 16 chr4 163744714 163745026 -38583321 + AluSx SINE Alu 1 312 0 2091 105 62 60 chr4 163745026 163745106 -38583241 - MER4A LTR ERV1 -582 82 4 1989 119 3 7 chr4 163745401 163745533 -38582814 + AluSx SINE Alu 3 134 -178 2278 99 3 3 chr4 163745533 163745825 -38582522 + AluSc SINE Alu 1 292 -17 1989 119 3 7 chr4 163745825 163745977 -38582370 + AluSx SINE Alu 134 286 -26 296 366 55 21 chr4 163746431 163746904 -38581443 - L2 LINE L2 -1262 2052 1564 260 237 184 35 chr4 163747538 163747652 -38580695 - MIR3 SINE MIR -63 145 15 340 270 70 9 chr4 163747946 163748061 -38580286 + MIR3 SINE MIR 60 181 -27 2279 108 0 0 chr4 163748191 163748496 -38579851 + AluSx SINE Alu 1 305 -7 2074 148 0 0 chr4 163749194 163749497 -38578850 + AluJb SINE Alu 1 303 -9 2469 60 0 31 chr4 163750410 163750727 -38577620 + AluY SINE Alu 1 307 -4 2426 76 7 0 chr4 163750778 163751081 -38577266 + AluY SINE Alu 2 306 -5 1832 152 20 14 chr4 163751305 163751601 -38576746 + AluJb SINE Alu 1 298 -14 180 217 0 0 chr4 163752636 163752682 -38575665 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 501 250 85 23 chr4 163752761 163752937 -38575410 + MIR SINE MIR 1 187 -75 1488 154 112 4 chr4 163753284 163753543 -38574804 + AluJo SINE Alu 3 289 -23 1957 114 0 32 chr4 163753834 163754115 -38574232 + AluSx SINE Alu 1 272 -40 210 71 0 0 chr4 163754215 163754243 -38574104 + (A)n Simple_repeat Simple_repeat 1 28 0 1336 195 18 25 chr4 163754256 163754540 -38573807 + L1MB5 LINE L1 5088 5367 -807 1876 155 7 7 chr4 163754540 163754843 -38573504 + AluJb SINE Alu 1 303 -9 1336 195 18 25 chr4 163754843 163755046 -38573301 + L1MB5 LINE L1 5367 5570 -604 594 138 0 21 chr4 163755053 163755147 -38573200 - AluSq/x SINE Alu -176 136 45 2575 165 111 35 chr4 163755148 163755265 -38573082 + L1MB5 LINE L1 5554 5661 -513 2064 148 0 16 chr4 163755265 163755582 -38572765 + AluJb SINE Alu 1 312 0 2575 165 111 35 chr4 163755582 163755778 -38572569 + L1MB5 LINE L1 5661 5841 -333 2088 138 3 0 chr4 163755778 163756082 -38572265 + AluSx SINE Alu 1 305 -7 2575 165 111 35 chr4 163756082 163756342 -38572005 + L1MB5 LINE L1 5841 6172 -2 2866 50 3 24 chr4 163756390 163756766 -38571581 + L1PA8 LINE L1 5805 6172 0 2451 84 0 10 chr4 163756775 163757085 -38571262 + AluY SINE Alu 1 307 -4 2190 128 0 0 chr4 163757137 163757443 -38570904 + AluSx SINE Alu 1 306 -6 792 161 0 23 chr4 163757726 163757856 -38570491 + FLAM_C SINE Alu 2 128 -5 1459 173 20 62 chr4 163757921 163758055 -38570292 + AluJo SINE Alu 1 139 -173 2541 51 0 0 chr4 163758055 163758348 -38569999 - AluY SINE Alu -18 293 1 1459 173 20 62 chr4 163758348 163758519 -38569828 + AluJo SINE Alu 139 293 -19 1799 142 69 7 chr4 163758556 163758844 -38569503 - AluJb SINE Alu -6 306 1 335 269 198 15 chr4 163758930 163759127 -38569220 - MIR SINE MIR -12 250 18 400 188 25 12 chr4 163759404 163759484 -38568863 - MER112 DNA MER1_type 0 260 180 725 206 67 42 chr4 163759485 163759650 -38568697 - FAM SINE Alu -6 43 1 363 253 97 26 chr4 163759669 163759758 -38568589 - MER112 DNA MER1_type -95 165 84 420 55 0 0 chr4 163759758 163759813 -38568534 + (TG)n Simple_repeat Simple_repeat 2 56 0 363 253 97 26 chr4 163759813 163759877 -38568470 - MER112 DNA MER1_type -176 84 1 2245 103 3 0 chr4 163759951 163760263 -38568084 - AluSp SINE Alu 0 313 1 2138 141 0 0 chr4 163760279 163760577 -38567770 - AluSx SINE Alu -12 300 3 2255 100 3 0 chr4 163760979 163761270 -38567077 - AluSx SINE Alu -20 292 1 25 0 0 0 chr4 163761428 163761453 -38566894 + AT_rich Low_complexity Low_complexity 1 25 0 1618 150 29 21 chr4 163761654 163761934 -38566413 - AluJb SINE Alu -30 282 1 2300 111 3 0 chr4 163762068 163762366 -38565981 - AluSx SINE Alu -13 299 1 2423 106 3 0 chr4 163762515 163762827 -38565520 + AluSp SINE Alu 1 313 0 486 249 124 44 chr4 163762896 163763121 -38565226 + MLT1L LTR MaLR 369 611 -4 23 0 0 0 chr4 163763939 163763962 -38564385 + AT_rich Low_complexity Low_complexity 1 23 0 2165 93 0 14 chr4 163764430 163764719 -38563628 - AluSx SINE Alu -15 297 13 766 116 16 23 chr4 163764819 163764948 -38563399 + AluSg/x SINE Alu 182 309 -3 4638 139 19 35 chr4 163764987 163765848 -38562499 + L1MB7 LINE L1 5293 6139 -45 1074 179 0 0 chr4 163765850 163766023 -38562324 + FAM SINE Alu 2 174 -1 1038 198 0 0 chr4 163766685 163766862 -38561485 - FRAM SINE Alu 0 176 1 452 288 64 25 chr4 163766863 163767099 -38561248 + L1ME LINE L1 5417 5661 -460 1347 164 0 0 chr4 163767111 163767306 -38561041 - AluJb SINE Alu -32 280 86 2127 89 0 7 chr4 163767311 163767627 -38560720 - AluY SINE Alu 0 327 14 1821 161 3 14 chr4 163768355 163768532 -38559815 - AluJo SINE Alu 0 310 136 2077 145 0 6 chr4 163768532 163768843 -38559504 - AluSx SINE Alu -3 309 1 1821 161 3 14 chr4 163768843 163768978 -38559369 - AluJo SINE Alu -174 136 1 307 284 63 11 chr4 163769172 163769267 -38559080 - MIR3 SINE MIR -95 113 14 2012 128 17 3 chr4 163769873 163770161 -38558186 + AluSx SINE Alu 1 292 -20 593 240 7 14 chr4 163770193 163770480 -38557867 + (TATATG)n Simple_repeat Simple_repeat 1 284 0 251 237 0 72 chr4 163770481 163770578 -38557769 + L1MC4 LINE L1 6614 6703 -1339 230 180 49 0 chr4 163770626 163770687 -38557660 - L1MCa LINE L1 -4357 2069 2006 2046 130 3 13 chr4 163770773 163770944 -38557403 - AluSq SINE Alu -8 305 137 2242 120 7 3 chr4 163770944 163771252 -38557095 - AluSq SINE Alu -4 309 1 2046 130 3 13 chr4 163771252 163771388 -38556959 - AluSq SINE Alu -176 137 1 286 213 125 56 chr4 163771506 163771666 -38556681 + L1MC5 LINE L1 7623 7793 -168 1637 194 93 35 chr4 163771685 163772083 -38556264 - LTR40c LTR ERVL -6 459 39 3140 226 46 48 chr4 163772123 163772953 -38555394 - HERVL40 LTR ERVL -1 5529 4702 1014 123 201 0 chr4 163772976 163773155 -38555192 + MER20 DNA MER1_type 1 215 -4 615 128 11 11 chr4 163773195 163773289 -38555058 + AluJ/FLAM SINE Alu 1 94 -218 2566 264 104 46 chr4 163773293 163773842 -38554505 - HERVL40 LTR ERVL -1725 3805 3179 1675 166 22 4 chr4 163773842 163774119 -38554228 + AluJo SINE Alu 7 288 -24 2566 264 104 46 chr4 163774119 163774490 -38553857 - HERVL40 LTR ERVL -2351 3179 2831 1063 233 88 44 chr4 163774488 163774810 -38553537 - HERVL40 LTR ERVL -3123 2407 2068 * 234 0 0 0 chr4 163774810 163774836 -38553511 + (CA)n Simple_repeat Simple_repeat 2 27 0 1063 233 88 44 chr4 163774836 163774856 -38553491 - HERVL40 LTR ERVL -3462 2068 2050 37 0 0 54 chr4 163775002 163775024 -38553323 + AT_rich Low_complexity Low_complexity 1 23 -30 2177 98 3 7 chr4 163775024 163775309 -38553038 + AluSp SINE Alu 3 286 -27 37 0 0 54 chr4 163775309 163775342 -38553005 + AT_rich Low_complexity Low_complexity 23 53 0 1446 144 88 53 chr4 163775421 163775729 -38552618 - Cheshire DNA MER1_type -8 2412 2089 2354 85 0 50 chr4 163775729 163776047 -38552300 - AluSx SINE Alu -10 302 1 1446 144 88 53 chr4 163776047 163776077 -38552270 - Cheshire DNA MER1_type -331 2089 2062 524 248 49 106 chr4 163776078 163776221 -38552126 - Cheshire DNA MER1_type -2044 376 251 786 146 7 44 chr4 163776221 163776358 -38551989 + FLAM_C SINE Alu 1 132 -1 524 248 49 106 chr4 163776358 163776460 -38551887 - Cheshire DNA MER1_type -2169 251 145 1547 135 4 4 chr4 163776560 163776790 -38551557 - AluSq SINE Alu -83 230 1 39 38 0 0 chr4 163776790 163776843 -38551504 + AT_rich Low_complexity Low_complexity 1 53 0 379 289 198 32 chr4 163776903 163777242 -38551105 - L2 LINE L2 -1622 1692 1298 213 65 0 0 chr4 163777598 163777629 -38550718 + (A)n Simple_repeat Simple_repeat 1 31 0 236 284 111 25 chr4 163778071 163778152 -38550195 - MIR3 SINE MIR -119 89 2 804 180 0 0 chr4 163778312 163778440 -38549907 - FLAM_A SINE Alu -5 128 1 1423 152 0 25 chr4 163778559 163778796 -38549551 + AluSx SINE Alu 55 285 -27 2204 99 14 0 chr4 163780029 163780321 -38548026 + AluSq SINE Alu 2 297 -16 373 285 152 0 chr4 163780373 163780538 -38547809 - MIR SINE MIR -71 191 2 185 211 19 19 chr4 163782731 163782783 -38545564 + L2 LINE L2 2336 2387 -927 * 314 285 133 25 chr4 163782782 163782940 -38545407 + MIR SINE MIR 18 192 -70 845 188 0 7 chr4 163783104 163783248 -38545099 + AluJo SINE Alu 3 145 -167 1911 54 75 21 chr4 163783249 163783529 -38544818 + AluSq SINE Alu 1 295 -18 395 190 70 50 chr4 163783913 163784013 -38544334 + L1MB2 LINE L1 6030 6131 -40 594 196 0 0 chr4 163784021 163784128 -38544219 + FLAM_A SINE Alu 10 116 -26 1178 168 10 10 chr4 163784159 163784356 -38543991 + AluJo SINE Alu 1 197 -115 2026 102 0 8 chr4 163784356 163784621 -38543726 + AluSx SINE Alu 30 292 -20 297 75 0 0 chr4 163784621 163784661 -38543686 + (TA)n Simple_repeat Simple_repeat 2 41 0 425 200 8 77 chr4 163784952 163785024 -38543323 - MER112 DNA MER1_type -37 223 162 1424 165 114 7 chr4 163785024 163785296 -38543051 + AluJb SINE Alu 1 301 -11 425 200 8 77 chr4 163785296 163785353 -38542994 - MER112 DNA MER1_type -98 162 103 2217 112 0 0 chr4 163785354 163785648 -38542699 + AluSx SINE Alu 1 294 -18 241 159 286 0 chr4 163785649 163785712 -38542635 - MER7A DNA MER2_type -267 79 1 280 114 45 0 chr4 163786157 163786227 -38542120 + Alu SINE Alu 239 310 0 2884 107 13 39 chr4 163786385 163786844 -38541503 - L1PA13 LINE L1 -1 6162 5716 430 194 29 143 chr4 163787001 163787045 -38541302 - MLT1J LTR MaLR -30 481 434 2356 97 0 0 chr4 163787045 163787343 -38541004 + AluSg SINE Alu 1 298 -12 430 194 29 143 chr4 163787343 163787473 -38540874 - MLT1J LTR MaLR -77 434 327 794 211 70 18 chr4 163787505 163787676 -38540671 + AluJo SINE Alu 121 300 -12 505 278 124 39 chr4 163787676 163787910 -38540437 - MLT1J LTR MaLR -242 269 16 202 227 253 0 chr4 163787926 163788001 -38540346 + MIR SINE MIR 163 256 -6 1950 142 6 19 chr4 163788127 163788443 -38539904 - AluSx SINE Alu 0 312 1 3522 121 76 95 chr4 163788523 163788832 -38539515 + MER4D LTR ERV1 1 314 -589 1819 158 0 11 chr4 163788832 163789117 -38539230 - AluJb SINE Alu -30 282 1 3522 121 76 95 chr4 163789117 163789541 -38538806 + MER4D LTR ERV1 314 720 -183 2248 95 0 3 chr4 163789546 163789840 -38538507 - AluSq SINE Alu -8 305 13 1811 166 0 3 chr4 163791156 163791445 -38536902 + AluJb SINE Alu 7 294 -18 422 335 56 30 chr4 163793734 163793931 -38534416 - MIR SINE MIR -13 249 48 470 262 153 0 chr4 163794545 163794728 -38533619 + MIR SINE MIR 1 211 -51 225 306 83 7 chr4 163794759 163794903 -38533444 + L2 LINE L2 2477 2631 -683 534 254 88 31 chr4 163796205 163796398 -38531949 + L1MC4a LINE L1 5721 5924 -1884 25 0 0 0 chr4 163796694 163796719 -38531628 + AT_rich Low_complexity Low_complexity 1 25 0 248 241 0 0 chr4 163797362 163797416 -38530931 - L1ME LINE L1 -377 5787 5734 374 250 47 28 chr4 163797471 163797606 -38530741 - L1ME LINE L1 -393 5728 5590 1873 139 7 18 chr4 163798589 163798870 -38529477 + AluJb SINE Alu 1 278 -34 247 91 45 0 chr4 163798882 163798926 -38529421 + AluJb SINE Alu 257 302 0 413 268 56 71 chr4 163799009 163799278 -38529069 + L2 LINE L2 3000 3264 -49 189 0 0 0 chr4 163799278 163799299 -38529048 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1400 133 0 8 chr4 163799400 163799648 -38528699 - SVA Other Other -709 677 432 208 268 71 18 chr4 163799675 163799731 -38528616 + L2 LINE L2 3213 3271 -1 24 53 0 0 chr4 163799821 163799859 -38528488 + AT_rich Low_complexity Low_complexity 1 38 0 2306 98 0 3 chr4 163802006 163802302 -38526045 + AluSc SINE Alu 1 295 -14 2236 131 0 6 chr4 163803001 163803315 -38525032 + AluSx SINE Alu 1 312 0 2877 164 65 37 chr4 163803544 163804009 -38524338 - MER68 LTR ERV1 -10 552 69 1798 130 94 0 chr4 163804009 163804285 -38524062 + AluSq SINE Alu 1 302 -11 2877 164 65 37 chr4 163804285 163804356 -38523991 - MER68 LTR ERV1 -493 69 1 640 42 0 0 chr4 163804465 163804536 -38523811 + AluSq/x SINE Alu 73 143 -170 2963 64 6 8 chr4 163804536 163804897 -38523450 + L1PA8 LINE L1 5805 6164 -8 1234 150 0 0 chr4 163804932 163805119 -38523228 + AluSg/x SINE Alu 112 298 -12 724 68 0 15 chr4 163805120 163805242 -38523105 + L1PA5 LINE L1 5925 6146 -8 222 37 0 0 chr4 163805242 163805269 -38523078 + (TA)n Simple_repeat Simple_repeat 1 27 0 510 273 93 16 chr4 163805586 163805780 -38522567 + L2 LINE L2 2889 3097 -216 2492 66 0 3 chr4 163806497 163806800 -38521547 + AluY SINE Alu 1 302 -9 343 299 26 17 chr4 163806858 163806999 -38521348 + MIR SINE MIR 4 154 -59 963 159 67 31 chr4 163807007 163807202 -38521145 + MER3 DNA MER1_type 2 203 -6 187 217 17 100 chr4 163807245 163807305 -38521042 + L2 LINE L2 3210 3264 -8 27 92 0 0 chr4 163808011 163808087 -38520260 + AT_rich Low_complexity Low_complexity 1 76 0 21 0 0 0 chr4 163808180 163808201 -38520146 + AT_rich Low_complexity Low_complexity 1 21 0 2280 94 0 3 chr4 163808284 163808600 -38519747 + AluSx SINE Alu 1 315 0 6842 133 19 18 chr4 163808656 163809612 -38518735 - L1MA5A LINE L1 -5 6292 5339 1706 157 4 4 chr4 163809612 163809879 -38518468 - AluJb SINE Alu -10 302 36 6842 133 19 18 chr4 163809879 163810984 -38517363 - L1MA5A LINE L1 -958 5339 4220 2186 119 0 10 chr4 163810985 163811280 -38517067 - AluSx SINE Alu -20 292 1 2133 130 3 0 chr4 163811832 163812124 -38516223 + AluSx SINE Alu 7 299 -13 1244 128 0 0 chr4 163812131 163812303 -38516044 + AluSg/x SINE Alu 125 296 -16 2265 88 3 44 chr4 163812305 163812450 -38515897 + AluSx SINE Alu 1 150 -162 2480 79 0 3 chr4 163812450 163812755 -38515592 + AluSp SINE Alu 1 304 -9 2265 88 3 44 chr4 163812755 163812927 -38515420 + AluSx SINE Alu 150 305 -7 2259 94 7 3 chr4 163813337 163813636 -38514711 + AluSx SINE Alu 1 300 -12 2234 110 0 0 chr4 163813750 163814032 -38514315 + AluSg SINE Alu 1 282 -28 180 111 0 0 chr4 163814032 163814059 -38514288 + (TA)n Simple_repeat Simple_repeat 2 28 0 2236 104 3 0 chr4 163814070 163814367 -38513980 + AluSx SINE Alu 6 303 -9 21 36 0 0 chr4 163814967 163814995 -38513352 + AT_rich Low_complexity Low_complexity 1 28 0 2258 121 0 0 chr4 163815623 163815928 -38512419 + AluSx SINE Alu 1 305 -7 339 304 0 0 chr4 163816533 163816671 -38511676 - L1MC4 LINE L1 -1339 6703 6614 2564 69 0 0 chr4 163816676 163816980 -38511367 - AluY SINE Alu -7 304 1 2359 93 0 0 chr4 163817825 163818126 -38510221 - AluSc SINE Alu -8 301 1 288 0 0 0 chr4 163818582 163818614 -38509733 + (TG)n Simple_repeat Simple_repeat 2 33 0 1908 148 10 7 chr4 163819106 163819404 -38508943 + AluSx SINE Alu 1 299 -13 668 249 11 50 chr4 163819586 163819767 -38508580 - FAM SINE Alu -1 174 1 2181 90 7 4 chr4 163820043 163820351 -38507996 + AluSx SINE Alu 9 317 0 830 203 63 0 chr4 163820418 163820576 -38507771 + AluSg/x SINE Alu 137 304 -8 967 242 27 27 chr4 163820866 163821122 -38507225 - MIR SINE MIR 0 262 7 1775 147 157 37 chr4 163821198 163821600 -38506747 - LTR7 LTR ERV1 0 450 1 402 159 0 0 chr4 163823185 163823254 -38505093 + Alu SINE Alu 242 310 -2 1767 161 31 3 chr4 163823622 163823913 -38504434 - AluJb SINE Alu -13 299 1 328 259 96 108 chr4 163824313 163824385 -38503962 + MIR SINE MIR 99 170 -92 1239 189 35 8 chr4 163824385 163824639 -38503708 + L1MB8 LINE L1 5902 6162 -16 328 259 96 108 chr4 163824639 163824732 -38503615 + MIR SINE MIR 170 262 0 344 277 7 29 chr4 163825003 163825140 -38503207 - L1M4 LINE L1 -1128 5018 4885 23 0 0 0 chr4 163825190 163825213 -38503134 + AT_rich Low_complexity Low_complexity 1 23 0 938 210 30 5 chr4 163825220 163825420 -38502927 - AluJo SINE Alu -22 290 86 1751 184 0 0 chr4 163825443 163825737 -38502610 + AluJb SINE Alu 1 294 -18 192 77 0 0 chr4 163827315 163827341 -38501006 + (GA)n Simple_repeat Simple_repeat 1 26 0 2480 50 3 0 chr4 163827417 163827715 -38500632 + AluY SINE Alu 1 299 -12 1945 118 32 4 chr4 163827744 163828023 -38500324 + AluSq SINE Alu 1 287 -26 2045 143 0 13 chr4 163830133 163830447 -38497900 + AluJb SINE Alu 1 310 -2 441 0 0 0 chr4 163830549 163830598 -38497749 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 352 124 258 62 chr4 163830599 163830696 -38497651 - AluSg SINE Alu -207 93 1 1141 159 0 0 chr4 163830874 163831044 -38497303 + AluJb SINE Alu 137 306 -6 745 154 8 0 chr4 163831479 163831596 -38496751 + FLAM_C SINE Alu 1 118 -25 813 229 0 0 chr4 163833666 163833823 -38494524 + FRAM SINE Alu 1 157 -19 389 231 87 127 chr4 163834278 163834342 -38494005 + L1ME4a LINE L1 5255 5320 -2488 2173 133 3 0 chr4 163834342 163834642 -38493705 + AluSx SINE Alu 1 301 -11 389 231 87 127 chr4 163834642 163834678 -38493669 + L1ME4a LINE L1 5320 5356 -2452 2291 94 0 7 chr4 163834678 163834986 -38493361 + AluY SINE Alu 1 306 -5 389 231 87 127 chr4 163834986 163835113 -38493234 + L1ME4a LINE L1 5356 5474 -2334 250 250 45 18 chr4 163835196 163835308 -38493039 + L1ME4a LINE L1 5650 5764 -357 362 238 52 98 chr4 163835388 163835502 -38492845 + L1ME4a LINE L1 5938 6041 -80 1449 227 3 3 chr4 163835502 163835806 -38492541 - AluSg SINE Alu -6 304 1 362 238 52 98 chr4 163835806 163835884 -38492463 + L1ME4a LINE L1 6041 6121 0 1669 166 25 0 chr4 163835975 163836306 -38492041 - AluJb SINE Alu 0 338 1 626 228 167 40 chr4 163836591 163836796 -38491551 - MIR SINE MIR -4 258 20 2189 116 0 0 chr4 163836796 163837089 -38491258 + AluSx SINE Alu 1 293 -19 626 228 167 40 chr4 163837089 163837111 -38491236 - MIR SINE MIR -242 20 2 1680 169 23 16 chr4 163837527 163837834 -38490513 + AluJo SINE Alu 1 309 -3 559 149 0 0 chr4 163839291 163839378 -38488969 + AluSg SINE Alu 37 123 -187 877 96 0 0 chr4 163839942 163840057 -38488290 + AluSg/x SINE Alu 178 292 -20 522 251 30 150 chr4 163840222 163840378 -38487969 + MIR SINE MIR 6 118 -144 2404 89 0 0 chr4 163840378 163840680 -38487667 + AluSg SINE Alu 1 302 -8 522 251 30 150 chr4 163840680 163840790 -38487557 + MIR SINE MIR 118 240 -22 243 267 67 13 chr4 163840787 163840862 -38487485 + L2 LINE L2 2984 3062 -251 * 284 204 0 0 chr4 163840942 163840986 -38487361 + L2 LINE L2 3252 3295 -18 243 0 0 0 chr4 163840989 163841016 -38487331 + (TG)n Simple_repeat Simple_repeat 1 27 0 1669 141 11 39 chr4 163843293 163843577 -38484770 - AluJb SINE Alu -12 300 25 200 57 0 29 chr4 163843646 163843681 -38484666 + (TTGG)n Simple_repeat Simple_repeat 4 37 0 186 43 0 0 chr4 163843682 163843705 -38484642 + (TGGA)n Simple_repeat Simple_repeat 4 26 0 2499 72 0 0 chr4 163843893 163844198 -38484149 - AluY SINE Alu -6 305 1 258 185 12 0 chr4 163894361 163894416 -38433931 - AluJb SINE Alu -263 40 2 189 178 0 0 chr4 163894605 163894650 -38433697 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 24 32 0 0 chr4 163894845 163894876 -38433471 + AT_rich Low_complexity Low_complexity 1 31 0 650 195 0 8 chr4 163894876 163894999 -38433348 - FLAM_C SINE Alu -15 128 7 2127 113 0 0 chr4 163895223 163895516 -38432831 - AluSx SINE Alu -19 293 1 1959 125 7 17 chr4 163895518 163895815 -38432532 - AluSx SINE Alu -18 294 1 2196 97 0 56 chr4 163896135 163896455 -38431892 - AluSq SINE Alu -11 302 1 1651 75 0 5 chr4 163897094 163897294 -38431053 - AluSq SINE Alu -114 199 1 566 243 0 0 chr4 163900443 163900550 -38427797 - FLAM_A SINE Alu -27 115 9 658 221 8 0 chr4 163900629 163900751 -38427596 - FLAM_A SINE Alu -10 123 1 639 131 31 9 chr4 163901073 163901333 -38427014 + AluSx SINE Alu 1 306 -6 295 188 71 35 chr4 163901448 163901533 -38426814 - L1MC5 LINE L1 -42 7919 7832 22 0 0 0 chr4 163901650 163901672 -38426675 + AT_rich Low_complexity Low_complexity 1 22 0 1358 148 59 42 chr4 163902167 163902404 -38425943 + AluJo SINE Alu 1 241 -71 2163 129 3 0 chr4 163902519 163902821 -38425526 - AluSx SINE Alu -9 303 1 2536 73 0 0 chr4 163902930 163903232 -38425115 - AluY SINE Alu -9 302 1 2213 108 0 16 chr4 163903232 163903539 -38424808 - AluSx SINE Alu -10 302 1 867 175 21 0 chr4 163903972 163904115 -38424232 + MER2 DNA MER2_type 1 146 -199 2269 72 0 0 chr4 163904123 163904434 -38423913 - AluY SINE Alu 0 316 6 403 155 0 0 chr4 163904434 163904492 -38423855 - AluJ/FRAM SINE Alu -31 271 214 2284 104 0 16 chr4 163904600 163904909 -38423438 + AluSx SINE Alu 1 304 -8 32 26 0 0 chr4 163905538 163905577 -38422770 + AT_rich Low_complexity Low_complexity 1 39 0 270 286 143 16 chr4 163905656 163905845 -38422502 - MIR SINE MIR -49 213 1 506 315 0 7 chr4 163906862 163907011 -38421336 + L2 LINE L2 2838 2985 -328 515 287 103 31 chr4 163907092 163907479 -38420868 - L1MEd LINE L1 -5221 898 484 290 254 24 32 chr4 163907733 163907859 -38420488 - L1MEd LINE L1 -5988 131 7 649 303 104 19 chr4 163907866 163908183 -38420164 + L2 LINE L2 2968 3311 -2 352 303 38 8 chr4 163908183 163908315 -38420032 - MIR SINE MIR -43 219 84 321 89 0 0 chr4 163908372 163908417 -38419930 + (TGG)n Simple_repeat Simple_repeat 1 45 0 1495 99 0 0 chr4 163908522 163908714 -38419633 - AluSx SINE Alu -12 300 109 2452 104 8 8 chr4 163908714 163909069 -38419278 + THE1A LTR MaLR 1 355 0 749 150 0 9 chr4 163909069 163909182 -38419165 - AluSx SINE Alu -200 113 2 878 139 7 15 chr4 163909468 163909605 -38418742 - AluJo SINE Alu -176 136 1 2098 121 3 7 chr4 163910275 163910572 -38417775 - AluSx SINE Alu -16 296 1 2802 200 109 18 chr4 163910788 163911459 -38416888 - L1ME1 LINE L1 -5 6161 5430 279 191 0 0 chr4 163911466 163911529 -38416818 + CT-rich Low_complexity Low_complexity 1 63 0 1555 155 9 104 chr4 163911532 163911868 -38416479 - AluSp SINE Alu -9 304 1 1721 171 0 28 chr4 163911872 163912159 -38416188 - AluJo SINE Alu -32 280 2 189 178 0 0 chr4 163912364 163912409 -38415938 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 24 32 0 0 chr4 163912604 163912635 -38415712 + AT_rich Low_complexity Low_complexity 1 31 0 778 146 0 8 chr4 163912635 163912758 -38415589 - FLAM_C SINE Alu -15 128 7 188 267 93 35 chr4 163912896 163912982 -38415365 + MIR SINE MIR 81 171 -91 2242 107 0 0 chr4 163912982 163913273 -38415074 - AluSg SINE Alu -19 291 1 2312 100 0 3 chr4 163913475 163913775 -38414572 + AluSp SINE Alu 1 299 -14 1556 191 11 14 chr4 163913777 163914059 -38414288 - AluJo SINE Alu -30 282 2 440 280 76 81 chr4 163914418 163914825 -38413522 + L1MEd LINE L1 34 438 -5681 804 137 30 15 chr4 163914836 163914967 -38413380 - FLAM_C SINE Alu 0 133 1 426 239 26 43 chr4 163915168 163915285 -38413062 - L2 LINE L2 0 3313 3199 1367 132 0 0 chr4 163915287 163915486 -38412861 - Tigger7 DNA MER2_type 0 2487 2289 470 219 0 0 chr4 163915486 163915568 -38412779 + Tigger5 DNA MER2_type 4 85 -2238 307 171 12 110 chr4 163915566 163915648 -38412699 - Tigger5 DNA MER2_type -8 2315 2242 * 269 145 258 0 chr4 163915642 163915704 -38412643 + Tigger5 DNA MER2_type 2246 2323 0 * 2072 173 38 32 chr4 163915709 163916109 -38412238 - Tigger7 DNA MER2_type -233 500 99 2703 186 29 2 chr4 163916110 163916589 -38411758 + L1M2 LINE L1 4 495 -6354 4975 230 59 24 chr4 163916606 163917685 -38410662 + L1M2 LINE L1 677 1805 -5044 2125 129 7 7 chr4 163917685 163917995 -38410352 + AluSq SINE Alu 1 310 -3 4975 230 59 24 chr4 163917995 163918132 -38410215 + L1M2 LINE L1 1805 1936 -4913 1719 174 10 17 chr4 163918132 163918425 -38409922 + AluJb SINE Alu 1 291 -21 366 61 0 0 chr4 163918427 163918476 -38409871 + (TG)n Simple_repeat Simple_repeat 2 50 0 841 158 25 41 chr4 163918476 163918516 -38409831 + L1 LINE L1 4605 4644 -1502 2004 151 3 7 chr4 163918516 163918821 -38409526 + AluSx SINE Alu 1 304 -8 841 158 25 41 chr4 163918821 163918976 -38409371 + L1 LINE L1 4644 4797 -1349 953 197 4 86 chr4 163918976 163919209 -38409138 + AluJb SINE Alu 84 297 -15 266 253 0 0 chr4 163919365 163919440 -38408907 + L1MEd LINE L1 640 714 -5405 2074 120 27 3 chr4 163919448 163919748 -38408599 + AluSg SINE Alu 1 307 -3 1194 147 5 5 chr4 163919886 163920076 -38408271 - AluSg/x SINE Alu -10 300 111 287 176 0 47 chr4 163920090 163920175 -38408172 + G-rich Low_complexity Low_complexity 1 81 0 180 306 111 14 chr4 163920718 163920790 -38407557 + MIR SINE MIR 20 98 -164 1898 131 7 0 chr4 163920792 163921066 -38407281 - AluSx SINE Alu -36 276 1 478 78 69 49 chr4 163921066 163921168 -38407179 + Tigger3(Golem) DNA MER2_type 2329 2432 -597 1549 161 16 8 chr4 163921173 163921427 -38406920 - AluJo SINE Alu -54 258 3 207 0 0 0 chr4 163921433 163921456 -38406891 + (TG)n Simple_repeat Simple_repeat 2 24 0 1275 199 10 27 chr4 163921457 163921749 -38406598 - AluSx SINE Alu -23 289 3 385 243 69 21 chr4 163921752 163921941 -38406406 - L1PA5 LINE L1 0 6154 5957 1981 125 0 53 chr4 163922162 163922481 -38405866 + AluSq SINE Alu 1 302 -11 428 204 172 0 chr4 163922487 163922580 -38405767 - FLAM_C SINE Alu -33 110 2 289 145 49 92 chr4 163922646 163922773 -38405574 - Alu SINE Alu -2 299 245 29 32 0 0 chr4 163922798 163922829 -38405518 + GC_rich Low_complexity Low_complexity 1 31 0 35 24 0 0 chr4 163922899 163922941 -38405406 + GC_rich Low_complexity Low_complexity 1 42 0 430 183 0 0 chr4 163923041 163923112 -38405235 - MER8 DNA MER2_type -168 71 1 1360 100 0 0 chr4 163923144 163923314 -38405033 + AluSp SINE Alu 1 170 -143 470 86 0 14 chr4 163923314 163923384 -38404963 - Alu SINE Alu -241 69 1 1433 161 59 13 chr4 163923386 163923691 -38404656 - L1M4 LINE L1 -1228 4918 4600 1630 135 64 0 chr4 163924244 163924540 -38403807 - AluSg SINE Alu 0 313 1 279 254 0 0 chr4 163924548 163924611 -38403736 - L1MEd LINE L1 -5405 714 652 759 152 0 32 chr4 163924711 163924836 -38403511 - AluSg/x SINE Alu -27 285 165 223 152 43 0 chr4 163925068 163925114 -38403233 - L2 LINE L2 0 3313 3266 2397 72 14 0 chr4 163925365 163925658 -38402689 + AluSp SINE Alu 1 297 -16 2287 91 3 0 chr4 163926126 163926413 -38401934 + AluSx SINE Alu 10 297 -15 25 0 0 0 chr4 163926415 163926440 -38401907 + AT_rich Low_complexity Low_complexity 1 25 0 2466 68 0 7 chr4 163926640 163926936 -38401411 - AluY SINE Alu -15 296 3 331 121 0 17 chr4 163927131 163927189 -38401158 - FLAM_A SINE Alu -5 128 72 683 105 0 61 chr4 163927311 163927425 -38400922 - MER1B DNA MER1_type -1 338 232 294 136 0 0 chr4 163927422 163927466 -38400881 + MER1B DNA MER1_type 67 110 -187 * 1465 136 4 21 chr4 163927587 163927823 -38400524 + AluSg/x SINE Alu 79 310 0 2277 99 0 3 chr4 163927937 163928229 -38400118 + AluSc SINE Alu 1 291 -18 2162 103 0 3 chr4 163928792 163929093 -38399254 - AluSx SINE Alu -12 300 1 1956 125 10 14 chr4 163929095 163929390 -38398957 - AluSx SINE Alu -18 294 1 668 144 10 0 chr4 163930351 163930455 -38397892 - AluJb SINE Alu -14 298 194 328 178 78 22 chr4 163931369 163931459 -38396888 - HsTC2 DNA Tc2 -5 1893 1799 2331 73 0 13 chr4 163931465 163931768 -38396579 - AluY SINE Alu -12 299 1 6448 134 16 113 chr4 163931768 163932016 -38396331 - L1 LINE L1 -1258 6307 6037 2163 117 7 3 chr4 163932016 163932315 -38396032 - AluSg SINE Alu -10 300 1 6448 134 16 113 chr4 163932315 163932810 -38395537 - L1 LINE L1 -1528 6037 5496 755 104 44 59 chr4 163932810 163932945 -38395402 - AluSg/x SINE Alu -36 274 142 6448 134 16 113 chr4 163932945 163933701 -38394646 - L1 LINE L1 -2069 5496 4831 * 17283 141 78 18 chr4 163933692 163936891 -38391456 - L1 LINE L1 -4168 3397 9 731 240 34 106 chr4 163937224 163937261 -38391086 - L1MDb LINE L1 -4994 1224 1186 2269 111 0 40 chr4 163937261 163937586 -38390761 - AluSx SINE Alu 0 312 1 731 240 34 106 chr4 163937586 163937905 -38390442 - L1MDb LINE L1 -5032 1186 989 2156 115 13 29 chr4 163937905 163938219 -38390128 - AluSx SINE Alu -3 309 1 731 240 34 106 chr4 163938219 163938624 -38389723 - L1MDb LINE L1 -5229 989 557 307 269 65 65 chr4 163938959 163939238 -38389109 - L1MDb LINE L1 -5829 567 289 778 186 0 0 chr4 163939624 163939753 -38388594 - FLAM_C SINE Alu -12 131 3 23 33 0 0 chr4 163939969 163939999 -38388348 + AT_rich Low_complexity Low_complexity 1 30 0 2305 82 3 0 chr4 163939999 163940281 -38388066 + AluSp SINE Alu 1 283 -30 345 47 0 0 chr4 163940284 163940327 -38388020 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 698 186 0 0 chr4 163940344 163940462 -38387885 - FLAM_C SINE Alu -15 118 1 576 79 11 0 chr4 163940883 163940972 -38387375 - L1MA4A LINE L1 -11 6292 6203 189 0 0 0 chr4 163941070 163941091 -38387256 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 508 270 201 0 chr4 163942427 163942616 -38385731 + MIR SINE MIR 24 250 -12 410 230 0 0 chr4 163942687 163942760 -38385587 + 5S rRNA rRNA 5 77 -44 2569 137 78 65 chr4 163942760 163942878 -38385469 - Tigger1 DNA MER2_type 0 2418 2303 315 0 0 0 chr4 163942878 163942913 -38385434 + (TG)n Simple_repeat Simple_repeat 2 36 0 315 0 0 0 chr4 163942913 163942948 -38385399 + (CA)n Simple_repeat Simple_repeat 2 36 0 2569 137 78 65 chr4 163942948 163942965 -38385382 - Tigger1 DNA MER2_type -115 2303 2288 1950 152 3 3 chr4 163942965 163943254 -38385093 - AluJb SINE Alu -23 289 1 2569 137 78 65 chr4 163943254 163943702 -38384645 - Tigger1 DNA MER2_type -130 2288 1825 1758 152 0 8 chr4 163943702 163943966 -38384381 + AluJb SINE Alu 1 262 -50 9746 129 57 7 chr4 163943966 163945169 -38383178 - Tigger1 DNA MER2_type -674 1744 434 2314 94 7 0 chr4 163945169 163945468 -38382879 + AluSx SINE Alu 1 301 -11 9746 129 57 7 chr4 163945468 163945925 -38382422 - Tigger1 DNA MER2_type -1984 434 1 2210 82 0 63 chr4 163946845 163947163 -38381184 + AluY SINE Alu 1 298 -13 1733 173 0 20 chr4 163947628 163947923 -38380424 + AluJb SINE Alu 1 289 -23 1235 269 74 16 chr4 163948051 163948606 -38379741 - L1MC4a LINE L1 -1869 5939 5353 8753 57 4 187 chr4 163948626 163950322 -38378025 - SVA Other Other 0 1386 1 33 43 0 0 chr4 163950441 163950488 -38377859 + AT_rich Low_complexity Low_complexity 1 47 0 2295 115 0 10 chr4 163950488 163950800 -38377547 - AluSx SINE Alu -3 309 1 1599 201 4 4 chr4 163950963 163951236 -38377111 - AluJb SINE Alu -39 273 1 837 239 104 0 chr4 163951404 163951634 -38376713 + MIR SINE MIR 9 262 0 305 255 131 52 chr4 163952786 163952939 -38375408 - L1ME3A LINE L1 -98 6072 5908 883 238 68 36 chr4 163953046 163953411 -38374936 - L1MC5 LINE L1 -518 7443 7067 731 206 0 0 chr4 163953420 163953551 -38374796 + FLAM_A SINE Alu 1 131 -2 369 202 46 17 chr4 163953581 163953754 -38374593 + (TA)n Simple_repeat Simple_repeat 1 178 0 568 216 29 97 chr4 163953765 163954075 -38374272 - L1MC5 LINE L1 -920 7041 6753 2217 95 50 0 chr4 163954079 163954416 -38373931 + THE1B LTR MaLR 5 358 -6 10402 114 39 0 chr4 163954422 163955943 -38372404 + THE1B-int LTR MaLR 1 1580 0 2693 63 22 22 chr4 163955943 163956307 -38372040 + THE1B LTR MaLR 1 364 0 544 237 24 15 chr4 163956307 163956434 -38371913 - L1MC5 LINE L1 -1056 6758 6634 222 91 0 0 chr4 163956434 163956467 -38371880 + (CA)n Simple_repeat Simple_repeat 2 34 0 544 237 24 15 chr4 163956467 163956488 -38371859 - L1MC5 LINE L1 -1180 6634 6615 198 103 0 0 chr4 163956488 163956517 -38371830 + (TATATG)n Simple_repeat Simple_repeat 4 32 0 544 237 24 15 chr4 163956517 163956558 -38371789 - L1MC5 LINE L1 -1199 6615 6566 * 2909 203 35 67 chr4 163956555 163957575 -38370772 - L1 LINE L1 -2103 4043 2992 2237 98 0 0 chr4 163957575 163957862 -38370485 - AluSx SINE Alu -25 287 1 2909 203 35 67 chr4 163957862 163957883 -38370464 - L1 LINE L1 -3154 2992 2972 611 181 9 17 chr4 163957883 163957999 -38370348 - FLAM_A SINE Alu -18 115 1 2909 203 35 67 chr4 163957999 163958171 -38370176 - L1 LINE L1 -3174 2972 2796 1629 192 19 3 chr4 163958171 163958478 -38369869 - AluJb SINE Alu 0 312 1 2909 203 35 67 chr4 163958478 163958697 -38369650 - L1 LINE L1 -3350 2796 2728 9636 65 5 101 chr4 163958697 163960207 -38368140 - SVA Other Other -7 1379 15 2909 203 35 67 chr4 163960207 163960364 -38367983 - L1 LINE L1 -3418 2728 2568 198 103 0 0 chr4 163961274 163961303 -38367044 + (CA)n Simple_repeat Simple_repeat 2 30 0 349 283 36 7 chr4 163961377 163961515 -38366832 + MER20B DNA MER1_type 2 143 -640 532 254 154 33 chr4 163961569 163961966 -38366381 + MER20B DNA MER1_type 252 696 -87 367 233 48 27 chr4 163961970 163962116 -38366231 - MER104 DNA Tc2 -5 175 27 410 330 83 43 chr4 163962309 163962752 -38365595 - MLT1K LTR MaLR -3 585 125 703 152 23 0 chr4 163963928 163964060 -38364287 - L1MD1 LINE L1 0 6242 6108 7129 218 89 17 chr4 163964082 163967356 -38360991 - L1MD1 LINE L1 -188 6054 2554 2295 108 0 0 chr4 163967458 163967754 -38360593 + AluSg SINE Alu 1 296 -14 378 285 85 34 chr4 163968083 163968318 -38360029 - L1MC4a LINE L1 -1897 5911 5665 2359 108 43 6 chr4 163968447 163968798 -38359549 - THE1B LTR MaLR 0 364 1 195 143 0 61 chr4 163969136 163969185 -38359162 + MIR SINE MIR 179 224 -38 23 54 0 0 chr4 163969216 163969253 -38359094 + AT_rich Low_complexity Low_complexity 1 37 0 1855 201 97 9 chr4 163969305 163969739 -38358608 - MLT1F LTR MaLR 0 542 71 597 168 0 0 chr4 163970171 163970272 -38358075 + FLAM_A SINE Alu 36 136 -6 400 265 12 24 chr4 163970275 163970441 -38357906 - MER103 DNA DNA -1 165 2 2090 104 32 0 chr4 163971661 163971940 -38356407 - AluSq SINE Alu -13 300 13 2097 98 18 0 chr4 163972106 163972383 -38355964 + AluSg SINE Alu 1 282 -28 356 299 30 8 chr4 163972469 163972603 -38355744 + L1MEd LINE L1 645 781 -5338 23 33 0 0 chr4 163972613 163972643 -38355704 + AT_rich Low_complexity Low_complexity 1 30 0 1816 176 3 0 chr4 163973134 163973436 -38354911 - AluJo SINE Alu -9 303 1 1105 152 54 0 chr4 163973577 163973781 -38354566 - L1PB4 LINE L1 -2 6154 5940 2321 192 42 2 chr4 163973949 163974396 -38353951 - MLT1C LTR MaLR 0 467 3 21 0 0 0 chr4 163974618 163974639 -38353708 + AT_rich Low_complexity Low_complexity 1 21 0 866 274 104 42 chr4 163974664 163975145 -38353202 - MLT1J LTR MaLR 0 511 1 345 247 65 13 chr4 163977923 163978077 -38350270 - L1M4 LINE L1 -1486 4660 4499 2068 136 0 16 chr4 163978352 163978531 -38349816 - AluSx SINE Alu 0 312 139 2371 87 3 0 chr4 163978531 163978831 -38349516 - AluSp SINE Alu -12 301 1 2068 136 0 16 chr4 163978831 163978968 -38349379 - AluSx SINE Alu -173 139 1 359 247 65 0 chr4 163979033 163979126 -38349221 + L2 LINE L2 3170 3268 -4 1591 160 7 46 chr4 163979522 163979828 -38348519 - AluSx SINE Alu -18 294 1 675 259 134 60 chr4 163980023 163980175 -38348172 - L1MC4a LINE L1 -1882 5995 5856 1960 112 79 0 chr4 163980175 163980452 -38347895 - AluSx SINE Alu -13 299 1 675 259 134 60 chr4 163980452 163980615 -38347732 - L1MC4a LINE L1 -2021 5856 5707 1816 181 0 0 chr4 163980615 163980924 -38347423 - AluSx SINE Alu -3 309 1 675 259 134 60 chr4 163980924 163981195 -38347152 - L1MC4a LINE L1 -2170 5707 5364 742 219 12 12 chr4 163981472 163981636 -38346711 - FRAM SINE Alu -18 158 1 1521 181 24 27 chr4 163981787 163982079 -38346268 - AluJo SINE Alu -21 291 1 35 54 0 0 chr4 163982130 163982186 -38346161 + AT_rich Low_complexity Low_complexity 1 56 0 679 147 97 0 chr4 163982265 163982432 -38345915 + L1MD3 LINE L1 7725 7985 -10 279 219 73 0 chr4 163982929 163983025 -38345322 - L1MC4a LINE L1 -2268 3947 3845 1146 161 0 0 chr4 163983040 163983214 -38345133 - AluSg/x SINE Alu -5 307 134 2364 100 0 0 chr4 163983215 163983526 -38344821 - AluSx SINE Alu -1 311 1 53 17 0 0 chr4 163983703 163983763 -38344584 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr4 163984279 163984302 -38344045 + AT_rich Low_complexity Low_complexity 1 23 0 1318 274 95 62 chr4 163985789 163986167 -38342180 - L1MEc LINE L1 -4816 1399 1035 2245 97 3 0 chr4 163986167 163986466 -38341881 - AluY SINE Alu -11 300 1 2214 110 3 0 chr4 163986466 163986766 -38341581 - AluSg SINE Alu -7 303 3 1318 274 95 62 chr4 163986766 163987566 -38340781 - L1MEc LINE L1 -5179 1036 224 384 281 14 27 chr4 163987580 163987726 -38340621 - L1MEc LINE L1 -6216 180 37 279 334 85 25 chr4 163987818 163988262 -38340085 + L1P4 LINE L1 5312 5779 -382 1613 179 65 0 chr4 163988367 163988657 -38339690 - AluJb SINE Alu -3 309 1 1745 188 3 3 chr4 163989018 163989327 -38339020 - AluJb SINE Alu -1 311 3 203 161 0 54 chr4 163989979 163990035 -38338312 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 292 281 152 60 chr4 163990078 163990350 -38337997 - L2 LINE L2 -219 3053 2758 320 93 0 0 chr4 163990368 163990410 -38337937 + Tigger5 DNA MER2_type 37 78 -2245 351 253 0 0 chr4 163990410 163990489 -38337858 - Tigger5 DNA MER2_type -3 2320 2242 * 518 171 0 0 chr4 163990479 163990561 -38337786 + Tigger5 DNA MER2_type 2242 2323 0 640 256 68 21 chr4 163990562 163990753 -38337594 + MIR SINE MIR 11 210 -52 2859 129 24 4 chr4 163990786 163991143 -38337204 - L1PB1 LINE L1 -3 6148 5778 207 0 0 0 chr4 163991143 163991166 -38337181 + (TA)n Simple_repeat Simple_repeat 1 23 0 2859 129 24 4 chr4 163991166 163991273 -38337074 - L1PB1 LINE L1 -373 5778 5675 24 67 0 0 chr4 163991304 163991349 -38336998 + AT_rich Low_complexity Low_complexity 1 45 0 1892 123 33 40 chr4 163991400 163991538 -38336809 + AluSx SINE Alu 1 138 -174 2182 92 14 0 chr4 163991538 163991831 -38336516 + AluSp SINE Alu 1 297 -16 1892 123 33 40 chr4 163991831 163991993 -38336354 + AluSx SINE Alu 138 299 -13 2293 94 0 0 chr4 163992997 163993294 -38335053 - AluSq SINE Alu -16 297 1 926 153 17 11 chr4 163994180 163994356 -38333991 - L1MB8 LINE L1 -6 6172 5996 3438 158 40 20 chr4 163994359 163994793 -38333554 - L1MB8 LINE L1 -235 5943 5519 2118 120 3 3 chr4 163994793 163995094 -38333253 - AluSx SINE Alu -11 301 1 3438 158 40 20 chr4 163995094 163995535 -38332812 - L1MB8 LINE L1 -659 5519 5051 475 154 57 49 chr4 163995525 163995606 -38332741 - L1MB8 LINE L1 -1360 4786 4702 * 2196 116 0 7 chr4 163995606 163995916 -38332431 - AluSq SINE Alu -5 308 1 475 154 57 49 chr4 163995916 163995957 -38332390 - L1MB8 LINE L1 -1444 4702 4663 21 0 0 0 chr4 163996027 163996048 -38332299 + AT_rich Low_complexity Low_complexity 1 21 0 2332 76 0 0 chr4 163996399 163996690 -38331657 - AluY SINE Alu -20 291 1 275 253 37 49 chr4 163997459 163997621 -38330726 + L1MC4 LINE L1 7883 8042 0 187 298 130 15 chr4 163998246 163998377 -38329970 + L3 LINE CR1 633 778 -799 648 267 74 23 chr4 163998528 163998745 -38329602 + MIR SINE MIR 18 245 -17 623 244 142 27 chr4 163998813 163999038 -38329309 - MIR SINE MIR -7 255 5 214 195 0 0 chr4 163999175 163999216 -38329131 + T-rich Low_complexity Low_complexity 1 41 0 1451 110 75 12 chr4 163999433 163999687 -38328660 + L1MA1 LINE L1 6025 6294 -8 2544 242 39 43 chr4 163999688 164000071 -38328276 + L1MB2 LINE L1 2287 2670 -3476 2144 128 3 0 chr4 164000071 164000376 -38327971 - AluSp SINE Alu -7 306 1 2544 242 39 43 chr4 164000376 164000871 -38327476 + L1MB2 LINE L1 2670 3161 -2985 3318 92 41 31 chr4 164000872 164001360 -38326987 - MER1A DNA MER1_type 0 529 37 8243 207 24 40 chr4 164001374 164004449 -38323898 + L1MB2 LINE L1 3153 6171 0 22 70 0 0 chr4 164005485 164005528 -38322819 + AT_rich Low_complexity Low_complexity 1 43 0 30 0 0 0 chr4 164006084 164006114 -38322233 + AT_rich Low_complexity Low_complexity 1 30 0 476 174 19 26 chr4 164006181 164006336 -38322011 + CT-rich Low_complexity Low_complexity 1 154 0 21 36 0 0 chr4 164008136 164008164 -38320183 + AT_rich Low_complexity Low_complexity 1 28 0 616 278 0 22 chr4 164009233 164009413 -38318934 - MER69A DNA AcHobo -1 176 1 547 279 110 0 chr4 164009572 164009708 -38318639 - L2 LINE L2 -1 3271 3121 1457 181 50 7 chr4 164009829 164010106 -38318241 - AluJb SINE Alu -23 289 1 1225 184 4 17 chr4 164010225 164010458 -38317889 - AluJo SINE Alu -78 234 5 490 231 10 108 chr4 164010656 164010765 -38317582 - MER5B DNA MER1_type -2 176 93 2604 84 10 48 chr4 164010765 164011157 -38317190 - MER51B LTR ERV1 0 377 1 490 231 10 108 chr4 164011157 164011242 -38317105 - MER5B DNA MER1_type -85 93 1 1852 145 14 3 chr4 164012255 164012537 -38315810 - AluSx SINE Alu -18 294 10 336 309 122 52 chr4 164014057 164014400 -38313947 - MLT1K LTR MaLR -12 576 210 201 265 20 0 chr4 164016072 164016121 -38312226 - L2 LINE L2 -1 3271 3222 23 54 0 0 chr4 164017172 164017209 -38311138 + AT_rich Low_complexity Low_complexity 1 37 0 5656 24 3 0 chr4 164017617 164018279 -38310068 + L1PA4 LINE L1 5491 6154 -1 2402 73 0 13 chr4 164019586 164019899 -38308448 + AluY SINE Alu 1 309 -2 1865 148 7 17 chr4 164019916 164020214 -38308133 + AluSx SINE Alu 1 295 -17 1226 240 27 40 chr4 164020916 164021291 -38307056 - MLT1A2 LTR MaLR 0 374 5 1553 133 4 4 chr4 164021459 164021692 -38306655 - AluJb SINE Alu -15 297 65 1822 177 73 56 chr4 164021797 164022192 -38306155 - MLT2D LTR ERVL -8 406 5 574 179 0 43 chr4 164022290 164022407 -38305940 - L1M4 LINE L1 -462 5716 5605 22 35 0 0 chr4 164023571 164023600 -38304747 + AT_rich Low_complexity Low_complexity 1 29 0 345 276 0 0 chr4 164023631 164023718 -38304629 + MER58A DNA MER1_type 48 134 0 * 516 262 0 0 chr4 164023718 164023818 -38304529 + MER58A DNA MER1_type 81 180 -44 1647 145 46 14 chr4 164023818 164024100 -38304247 - MER1B DNA MER1_type 0 339 49 613 143 0 0 chr4 164024106 164024204 -38304143 - AluY SINE Alu -220 98 1 1374 208 17 58 chr4 164024204 164024238 -38304109 + MLT2D LTR ERVL 82 116 -298 913 84 53 0 chr4 164024238 164024369 -38303978 + MER85 DNA T2_type 2 139 0 1374 208 17 58 chr4 164024369 164024681 -38303666 + MLT2D LTR ERVL 116 414 0 1097 252 105 85 chr4 164024687 164025569 -38302778 - L1MDb LINE L1 -3922 2158 1295 604 198 78 0 chr4 164025569 164025685 -38302662 - FLAM_A SINE Alu -5 128 4 1097 252 105 85 chr4 164025685 164025759 -38302588 - L1MDb LINE L1 -4785 1295 1224 2247 84 17 3 chr4 164025759 164026057 -38302290 - AluY SINE Alu -9 302 1 1097 252 105 85 chr4 164026057 164026424 -38301923 - L1MDb LINE L1 -4856 1224 866 664 145 58 7 chr4 164026424 164026562 -38301785 - L1MA5 LINE L1 -3 6297 6153 1097 252 105 85 chr4 164026562 164026927 -38301420 - L1MDb LINE L1 -5214 866 468 298 310 82 63 chr4 164027082 164027447 -38300900 - L1MDb LINE L1 -5622 448 77 1114 288 75 41 chr4 164027581 164027918 -38300429 - L1M4c LINE L1 -4633 1751 1427 1880 156 14 0 chr4 164027918 164028206 -38300141 - AluSx SINE Alu -20 292 1 1114 288 75 41 chr4 164028206 164028805 -38299542 - L1M4c LINE L1 -4957 1427 783 21 82 0 0 chr4 164029805 164029854 -38298493 + AT_rich Low_complexity Low_complexity 1 49 0 2151 105 3 0 chr4 164030079 164030374 -38297973 - AluSx SINE Alu -16 296 1 2283 98 3 0 chr4 164031453 164031749 -38296598 - AluSp SINE Alu -16 297 1 22 56 0 0 chr4 164031838 164031874 -38296473 + AT_rich Low_complexity Low_complexity 1 36 0 5214 128 16 10 chr4 164031874 164033016 -38295331 - L1PA16 LINE L1 -9 6860 5686 1811 181 3 0 chr4 164033016 164033315 -38295032 - AluJb SINE Alu -12 300 1 5214 128 16 10 chr4 164033315 164033787 -38294560 - L1PA16 LINE L1 -1183 5686 5218 12912 196 63 51 chr4 164033788 164035203 -38293144 - L1PA16 LINE L1 -1755 5094 3698 1953 140 7 20 chr4 164035203 164035503 -38292844 - AluSx SINE Alu -16 296 1 12912 196 63 51 chr4 164035503 164036278 -38292069 - L1PA16 LINE L1 -3151 3698 2934 2365 76 0 16 chr4 164036278 164036582 -38291765 - AluY SINE Alu -12 299 1 12912 196 63 51 chr4 164036582 164039445 -38288902 - L1PA16 LINE L1 -3915 2934 2 2265 109 3 0 chr4 164039941 164040245 -38288102 - AluSx SINE Alu -7 305 1 21 82 0 0 chr4 164040692 164040741 -38287606 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr4 164041062 164041098 -38287249 + AT_rich Low_complexity Low_complexity 1 36 0 882 252 57 0 chr4 164041377 164041587 -38286760 + MER58A DNA MER1_type 1 222 -2 24 0 0 0 chr4 164041668 164041692 -38286655 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 164041872 164041893 -38286454 + AT_rich Low_complexity Low_complexity 1 21 0 2149 122 3 0 chr4 164042290 164042586 -38285761 - AluSx SINE Alu -9 303 7 670 118 0 20 chr4 164043676 164043778 -38284569 - AluJ/FLAM SINE Alu -210 102 3 24 53 0 0 chr4 164043787 164043825 -38284522 + AT_rich Low_complexity Low_complexity 1 38 0 1766 160 7 7 chr4 164043851 164044145 -38284202 - AluSx SINE Alu -18 294 1 1233 118 0 0 chr4 164044333 164044503 -38283844 + AluSg1 SINE Alu 1 170 -139 2184 132 0 0 chr4 164044585 164044896 -38283451 - AluSx SINE Alu -1 311 1 287 65 0 65 chr4 164046162 164046208 -38282139 - MADE1 DNA Mariner -37 43 1 189 0 0 0 chr4 164046418 164046439 -38281908 + (T)n Simple_repeat Simple_repeat 1 21 0 332 288 115 21 chr4 164046645 164046836 -38281511 - L1ME3A LINE L1 -200 5970 5762 378 273 40 84 chr4 164046840 164047237 -38281110 - L1ME3A LINE L1 -504 5658 5200 2155 113 7 0 chr4 164047536 164047836 -38280511 + AluSx SINE Alu 1 302 -10 548 286 25 0 chr4 164048106 164048267 -38280080 + MER58B DNA MER1_type 173 337 -4 2024 133 37 0 chr4 164048615 164048909 -38279438 + AluSx SINE Alu 1 305 -7 1800 157 50 55 chr4 164048946 164049317 -38279030 + Charlie1 DNA MER1_type 2343 2713 -48 2174 103 7 0 chr4 164049317 164049607 -38278740 + AluSc SINE Alu 3 294 -15 1800 157 50 55 chr4 164049607 164049655 -38278692 + Charlie1 DNA MER1_type 2713 2760 -1 207 306 111 14 chr4 164049823 164049895 -38278452 + MIR SINE MIR 20 98 -164 1914 128 7 0 chr4 164049897 164050171 -38278176 - AluSx SINE Alu -36 276 1 463 78 69 49 chr4 164050171 164050273 -38278074 + Tigger3(Golem) DNA MER2_type 2329 2432 -597 1533 161 16 8 chr4 164050278 164050532 -38277815 - AluJo SINE Alu -54 258 3 207 0 0 0 chr4 164050538 164050561 -38277786 + (TG)n Simple_repeat Simple_repeat 2 24 0 1837 151 0 17 chr4 164050562 164050854 -38277493 - AluSx SINE Alu -23 289 3 5677 43 4 3 chr4 164050859 164051556 -38276791 - L1PA5 LINE L1 0 6154 5457 1098 145 0 0 chr4 164051556 164051715 -38276632 - AluSg/x SINE Alu -15 297 139 3038 125 22 117 chr4 164051717 164052126 -38276221 + Tigger3(Golem) DNA MER2_type 2420 2742 -287 1456 163 63 22 chr4 164052126 164052241 -38276106 + AluJo SINE Alu 1 110 -202 360 0 0 0 chr4 164052241 164052281 -38276066 + (CA)n Simple_repeat Simple_repeat 2 41 0 1456 163 63 22 chr4 164052281 164052435 -38275912 + AluJo SINE Alu 110 281 -31 3038 125 22 117 chr4 164052435 164052698 -38275649 + Tigger3(Golem) DNA MER2_type 2742 3028 -1 2236 66 42 3 chr4 164052720 164053006 -38275341 - AluY SINE Alu -14 297 1 21 0 0 0 chr4 164054156 164054177 -38274170 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 164054602 164054625 -38273722 + AT_rich Low_complexity Low_complexity 1 23 0 1705 163 37 7 chr4 164054730 164055024 -38273323 + AluSx SINE Alu 1 303 -9 721 241 0 25 chr4 164055179 164055341 -38273006 - FAM SINE Alu -17 158 1 315 271 45 30 chr4 164055400 164055599 -38272748 - L1ME4a LINE L1 -12 6109 5908 472 259 36 22 chr4 164055931 164056070 -38272277 - L1ME4a LINE L1 -468 5653 5513 1022 258 77 3 chr4 164056968 164057278 -38271069 + HAL1 LINE L1 1547 1879 -628 231 237 17 0 chr4 164057916 164057975 -38270372 + L1ME3A LINE L1 6011 6070 -100 850 312 143 36 chr4 164058234 164058281 -38270066 + L2 LINE L2 2654 2695 -618 2107 119 0 17 chr4 164058281 164058576 -38269771 - AluSx SINE Alu -22 290 1 850 312 143 36 chr4 164058576 164059124 -38269223 + L2 LINE L2 2695 3309 -4 185 74 0 0 chr4 164059599 164059626 -38268721 + L2 LINE L2 3284 3310 -3 190 196 118 59 chr4 164059932 164059983 -38268364 + L2 LINE L2 3219 3272 0 22 103 0 0 chr4 164060474 164060552 -38267795 + AT_rich Low_complexity Low_complexity 1 78 0 2359 71 3 3 chr4 164063158 164063455 -38264892 + AluY SINE Alu 1 297 -14 525 209 0 30 chr4 164064971 164065105 -38263242 - FLAM_A SINE Alu 0 142 13 2182 116 3 0 chr4 164065237 164065529 -38262818 + AluSx SINE Alu 1 293 -19 295 243 95 0 chr4 164065538 164065612 -38262735 - MER5A DNA MER1_type -95 94 14 242 370 22 22 chr4 164066333 164066471 -38261876 - MIR SINE MIR -122 140 3 225 248 89 89 chr4 164066661 164066762 -38261585 - MIR3 SINE MIR -21 187 87 2076 166 2 40 chr4 164066823 164066999 -38261348 - L1PB4 LINE L1 -6 6150 5969 2100 122 0 3 chr4 164066999 164067302 -38261045 - AluSc SINE Alu -7 302 1 2076 166 2 40 chr4 164067302 164067548 -38260799 - L1PB4 LINE L1 -187 5969 5744 24 67 0 0 chr4 164069297 164069342 -38259005 + AT_rich Low_complexity Low_complexity 1 45 0 600 301 68 5 chr4 164069679 164069885 -38258462 - MIR SINE MIR -26 236 18 350 356 200 10 chr4 164070339 164070385 -38257962 - MIR SINE MIR -16 246 210 1363 146 86 83 chr4 164070385 164070721 -38257626 + MER1B DNA MER1_type 1 337 0 350 356 200 10 chr4 164070721 164070879 -38257468 - MIR SINE MIR -52 210 3 896 183 30 6 chr4 164071094 164071258 -38257089 + FRAM SINE Alu 1 163 -13 191 368 86 17 chr4 164071265 164071382 -38256965 + L2 LINE L2 2714 2838 -476 2289 89 0 22 chr4 164071599 164071913 -38256434 + AluY SINE Alu 5 311 0 260 286 0 0 chr4 164072088 164072144 -38256203 + MIR SINE MIR 195 250 -12 5294 140 65 27 chr4 164072696 164073651 -38254696 + Tigger1 DNA MER2_type 1 991 -1427 7242 42 15 0 chr4 164073653 164074665 -38253682 - L1PA5 LINE L1 0 6154 5136 31708 55 4 1 chr4 164074666 164078721 -38249626 + L1PA5 LINE L1 1059 5128 -1018 7091 159 35 12 chr4 164078721 164080121 -38248226 + Tigger1 DNA MER2_type 987 2418 0 1706 191 0 20 chr4 164080475 164080774 -38247573 + AluJo SINE Alu 1 293 -19 1953 126 7 14 chr4 164080949 164081235 -38247112 - AluSx SINE Alu -28 284 1 23 0 0 0 chr4 164081421 164081444 -38246903 + AT_rich Low_complexity Low_complexity 1 23 0 457 262 95 52 chr4 164082156 164082366 -38245981 - L2 LINE L2 0 3313 3095 411 214 61 69 chr4 164082401 164082485 -38245862 - L2 LINE L2 -536 2778 2694 2152 117 0 7 chr4 164082485 164082792 -38245555 + AluSx SINE Alu 1 305 -7 411 214 61 69 chr4 164082792 164082838 -38245509 - L2 LINE L2 -620 2694 2649 357 267 203 39 chr4 164082858 164083090 -38245257 - MLT1G LTR MaLR -13 577 273 276 318 45 0 chr4 164083259 164083369 -38244978 - MLT1G LTR MaLR -320 229 115 1980 244 136 20 chr4 164083444 164084177 -38244170 - L2 LINE L2 -685 2629 1812 1782 153 0 4 chr4 164084314 164084582 -38243765 + AluJb SINE Alu 1 267 -45 378 0 0 0 chr4 164084585 164084627 -38243720 + (CA)n Simple_repeat Simple_repeat 2 43 0 24 0 0 0 chr4 164084714 164084738 -38243609 + AT_rich Low_complexity Low_complexity 1 24 0 13935 148 38 27 chr4 164085410 164085648 -38242699 - Tigger2 DNA MER2_type -4 2714 2480 2229 113 0 6 chr4 164085648 164085959 -38242388 + AluSq SINE Alu 1 309 -4 13935 148 38 27 chr4 164085959 164087556 -38240791 - Tigger2 DNA MER2_type -238 2480 902 186 71 0 0 chr4 164087556 164087584 -38240763 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 13935 148 38 27 chr4 164087584 164087910 -38240437 - Tigger2 DNA MER2_type -1816 902 581 1825 121 0 8 chr4 164087910 164088167 -38240180 + AluSq SINE Alu 29 283 -30 13935 148 38 27 chr4 164088167 164088440 -38239907 - Tigger2 DNA MER2_type -2137 581 252 1621 174 40 0 chr4 164088489 164088765 -38239582 + AluJo SINE Alu 3 289 -23 7209 156 40 49 chr4 164088782 164090584 -38237763 + L1MB8 LINE L1 3790 5613 -691 984 136 110 0 chr4 164090617 164090771 -38237576 - AluSx SINE Alu -141 171 1 1470 167 63 11 chr4 164090775 164091062 -38237285 - AluJo SINE Alu -6 306 5 361 223 149 47 chr4 164092090 164092238 -38236109 + MIR SINE MIR 81 243 -19 471 192 75 0 chr4 164093131 164093251 -38235096 + L1MB8 LINE L1 6050 6178 0 205 287 175 35 chr4 164093281 164093424 -38234923 + MIR SINE MIR 29 191 -71 463 268 72 10 chr4 164093890 164094084 -38234263 - L1MC4 LINE L1 -1 8041 7836 1902 194 71 60 chr4 164094122 164094685 -38233662 - L1ME2 LINE L1 0 6164 5596 351 154 0 0 chr4 164094957 164095022 -38233325 + (CA)n Simple_repeat Simple_repeat 2 66 0 21 57 0 0 chr4 164097605 164097640 -38230707 + AT_rich Low_complexity Low_complexity 1 35 0 623 176 8 8 chr4 164097981 164098100 -38230247 - L1MC2 LINE L1 0 6344 6226 979 177 11 11 chr4 164099374 164099555 -38228792 + MER47A DNA MER2_type 20 200 -166 1154 124 6 0 chr4 164099568 164099737 -38228610 - Tigger5 DNA MER2_type -1 2322 2153 1454 182 4 11 chr4 164100362 164100626 -38227721 - AluJo SINE Alu -1 311 50 1688 201 0 13 chr4 164101746 164102050 -38226297 + AluJo SINE Alu 1 300 -12 1953 156 0 0 chr4 164102649 164102951 -38225396 + AluJo SINE Alu 1 302 -10 756 0 0 0 chr4 164103616 164103700 -38224647 + (TATCG)n Simple_repeat Simple_repeat 3 86 0 1320 219 29 4 chr4 164103700 164103978 -38224369 - AluJo SINE Alu -27 285 1 341 113 19 0 chr4 164103989 164104042 -38224305 - AluSp/q SINE Alu -9 294 241 985 197 126 51 chr4 164104043 164104297 -38224050 - L1MC4 LINE L1 -1063 6979 6707 183 100 0 0 chr4 164104302 164104332 -38224015 + (TG)n Simple_repeat Simple_repeat 2 31 0 259 85 43 0 chr4 164105296 164105343 -38223004 + (CATTT)n Simple_repeat Simple_repeat 4 52 0 2070 106 3 14 chr4 164105601 164105921 -38222426 + AluSx SINE Alu 1 317 0 295 283 0 0 chr4 164106453 164106545 -38221802 + (TA)n Simple_repeat Simple_repeat 1 92 0 35 0 0 0 chr4 164107029 164107064 -38221283 + AT_rich Low_complexity Low_complexity 1 35 0 212 253 89 25 chr4 164107408 164107487 -38220860 + L3 LINE CR1 594 677 -900 345 316 141 12 chr4 164107580 164107836 -38220511 + L3 LINE CR1 913 1201 -376 1280 47 2 30 chr4 164107836 164108243 -38220104 + (TTTCC)n Simple_repeat Simple_repeat 1 395 0 279 65 0 65 chr4 164109416 164109462 -38218885 - MADE1 DNA Mariner -37 43 1 189 0 0 0 chr4 164109672 164109693 -38218654 + (T)n Simple_repeat Simple_repeat 1 21 0 334 288 115 21 chr4 164109899 164110090 -38218257 - L1ME3A LINE L1 -200 5970 5762 398 279 37 84 chr4 164110094 164110491 -38217856 - L1ME3A LINE L1 -505 5657 5200 1988 149 0 7 chr4 164110790 164111098 -38217249 + AluSq SINE Alu 1 306 -7 1209 251 48 5 chr4 164111099 164111470 -38216877 - L1ME3A LINE L1 -3459 2687 2301 1451 110 75 12 chr4 164111482 164111736 -38216611 - L1MA1 LINE L1 -8 6294 6025 623 244 142 27 chr4 164112126 164112351 -38215996 + MIR SINE MIR 5 255 -7 427 260 95 30 chr4 164112419 164112588 -38215759 - MIR SINE MIR -17 245 66 2204 125 0 0 chr4 164112746 164113057 -38215290 - AluSx SINE Alu -1 311 1 287 65 0 65 chr4 164114323 164114369 -38213978 - MADE1 DNA Mariner -37 43 1 189 0 0 0 chr4 164114579 164114600 -38213747 + (T)n Simple_repeat Simple_repeat 1 21 0 322 293 49 4 chr4 164115145 164115312 -38213035 - L1M2 LINE L1 -589 5573 5409 234 304 29 0 chr4 164115299 164115401 -38212946 - L1M4 LINE L1 -842 5304 5200 * 2166 113 3 0 chr4 164115700 164116001 -38212346 + AluSx SINE Alu 1 302 -10 559 286 25 0 chr4 164116271 164116432 -38211915 + MER58B DNA MER1_type 173 337 -4 1905 137 38 3 chr4 164116781 164117074 -38211273 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr4 164117471 164117492 -38210855 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 164117672 164117696 -38210651 + AT_rich Low_complexity Low_complexity 1 24 0 877 252 57 0 chr4 164117777 164117987 -38210360 - MER58A DNA MER1_type -2 222 1 22 56 0 0 chr4 164118266 164118302 -38210045 + AT_rich Low_complexity Low_complexity 1 36 0 21 82 0 0 chr4 164118623 164118672 -38209675 + AT_rich Low_complexity Low_complexity 1 49 0 2233 109 3 0 chr4 164119120 164119424 -38208923 + AluSx SINE Alu 1 305 -7 12799 198 62 50 chr4 164119920 164122785 -38205562 + L1PA16 LINE L1 2 2831 -4018 2331 76 0 16 chr4 164122785 164123089 -38205258 + AluY SINE Alu 1 299 -12 12799 198 62 50 chr4 164123089 164123864 -38204483 + L1PA16 LINE L1 2831 3595 -3254 1921 140 7 20 chr4 164123864 164124164 -38204183 + AluSx SINE Alu 1 296 -16 12799 198 62 50 chr4 164124164 164125579 -38202768 + L1PA16 LINE L1 3595 5094 -1755 5201 129 39 7 chr4 164125580 164126053 -38202294 + L1PA16 LINE L1 5218 5674 -1195 1797 177 3 0 chr4 164126053 164126352 -38201995 + AluJb SINE Alu 1 300 -12 5201 129 39 7 chr4 164126352 164127494 -38200853 + L1PA16 LINE L1 5674 6860 -9 22 56 0 0 chr4 164127494 164127530 -38200817 + AT_rich Low_complexity Low_complexity 1 36 0 2254 95 3 0 chr4 164127619 164127914 -38200433 + AluSp SINE Alu 1 296 -17 2117 105 3 0 chr4 164128993 164129288 -38199059 + AluSx SINE Alu 1 296 -16 1123 287 75 41 chr4 164130559 164131158 -38197189 + L1M4c LINE L1 783 1427 -4957 1880 156 14 0 chr4 164131158 164131446 -38196901 + AluSx SINE Alu 1 292 -20 1123 287 75 41 chr4 164131446 164131783 -38196564 + L1M4c LINE L1 1427 1751 -4633 298 310 82 63 chr4 164131917 164132282 -38196065 + L1ME LINE L1 77 448 -5622 326 23 0 23 chr4 164132610 164132654 -38195693 + (TTTCC)n Simple_repeat Simple_repeat 1 43 0 1231 66 2 36 chr4 164132681 164133022 -38195325 + (TTTCC)n Simple_repeat Simple_repeat 1 507 0 400 235 38 38 chr4 164133227 164133359 -38194988 - FLAM_C SINE Alu -1 132 1 186 402 10 0 chr4 164133364 164133461 -38194886 + L3 LINE CR1 1445 1542 -35 273 342 0 13 chr4 164134585 164134661 -38193686 + MIR SINE MIR 17 91 -117 285 259 97 72 chr4 164134731 164135052 -38193295 - L1MC5 LINE L1 -50 7911 7583 306 73 0 0 chr4 164135065 164135106 -38193241 + (TG)n Simple_repeat Simple_repeat 2 42 0 1865 151 6 6 chr4 164135136 164135448 -38192899 - AluSx SINE Alu 0 312 1 1095 177 147 62 chr4 164135578 164135952 -38192395 + Looper DNA T2_type 51 463 -1095 1564 175 37 27 chr4 164135952 164136132 -38192215 - AluJb SINE Alu -12 300 114 444 19 0 0 chr4 164136132 164136185 -38192162 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 1564 175 37 27 chr4 164136185 164136301 -38192046 - AluJb SINE Alu -198 114 1 1095 177 147 62 chr4 164136301 164136327 -38192020 + Looper DNA T2_type 463 485 -1073 482 128 12 35 chr4 164136335 164136421 -38191926 + MER106A DNA MER1_type 30 113 -123 2906 194 46 32 chr4 164136443 164137164 -38191183 + Looper DNA T2_type 827 1557 -1 203 59 0 29 chr4 164138133 164138145 -38190202 + (TATATG)n Simple_repeat Simple_repeat 4 15 -21 2143 108 0 0 chr4 164138145 164138433 -38189914 + AluSx SINE Alu 1 288 -24 203 59 0 29 chr4 164138433 164138454 -38189893 + (TATATG)n Simple_repeat Simple_repeat 15 36 0 22 35 0 0 chr4 164140673 164140702 -38187645 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 164142087 164142110 -38186237 + AT_rich Low_complexity Low_complexity 1 23 0 36 0 0 0 chr4 164143609 164143645 -38184702 + AT_rich Low_complexity Low_complexity 1 36 0 357 364 126 44 chr4 164143882 164144378 -38183969 + L2 LINE L2 2753 3272 0 341 278 61 9 chr4 164144498 164144613 -38183734 + L2 LINE L2 3147 3267 -46 1149 181 10 5 chr4 164144880 164145084 -38183263 - AluJb SINE Alu -23 289 85 2336 80 3 0 chr4 164145089 164145391 -38182956 - AluSq SINE Alu -10 303 1 1425 178 12 4 chr4 164145428 164145687 -38182660 + AluJo SINE Alu 46 306 -6 389 158 0 14 chr4 164145690 164145768 -38182579 - L1ME2 LINE L1 -9 6155 6089 392 237 17 59 chr4 164145788 164145906 -38182441 - L1ME2 LINE L1 -137 6027 5915 2483 62 0 3 chr4 164146135 164146443 -38181904 - AluY SINE Alu -4 307 1 473 197 41 33 chr4 164146941 164147063 -38181284 + FLAM_A SINE Alu 1 123 -10 318 87 0 0 chr4 164148295 164148341 -38180006 + L1PA6 LINE L1 6105 6150 -4 2113 115 3 0 chr4 164149109 164149397 -38178950 - AluSx SINE Alu -23 289 1 1820 114 4 4 chr4 164149408 164149663 -38178684 - AluSx SINE Alu -9 303 49 313 279 12 0 chr4 164149695 164149781 -38178566 + MIR SINE MIR 66 152 -110 1628 158 3 81 chr4 164149793 164150115 -38178232 + AluSx SINE Alu 2 298 -14 1462 87 15 0 chr4 164150126 164150332 -38178015 + L1MA2 LINE L1 5532 5740 -564 2050 81 87 6 chr4 164150332 164150662 -38177685 + L1MA2 LINE L1 5945 6304 0 22 35 0 0 chr4 164150754 164150783 -38177564 + AT_rich Low_complexity Low_complexity 1 29 0 1661 144 46 3 chr4 164150954 164151238 -38177109 - AluSx SINE Alu -16 296 1 1938 164 71 105 chr4 164151296 164151644 -38176703 - LTR8A LTR ERV1 0 727 402 2031 113 38 3 chr4 164151644 164151937 -38176410 + AluSq SINE Alu 1 303 -10 1938 164 71 105 chr4 164151937 164152120 -38176227 - LTR8A LTR ERV1 -325 402 214 308 141 47 0 chr4 164152539 164152603 -38175744 + LTR8A LTR ERV1 1 67 -660 362 254 41 41 chr4 164152850 164152972 -38175375 - MER5C DNA MER1_type -200 124 3 1511 222 3 10 chr4 164153739 164154050 -38174297 + AluJo SINE Alu 1 309 -3 427 224 147 51 chr4 164154693 164154849 -38173498 - MIR SINE MIR 0 262 92 1006 89 0 0 chr4 164155437 164155561 -38172786 + AluSq/x SINE Alu 1 124 -189 1630 169 33 29 chr4 164155661 164156026 -38172321 + LTR8 LTR ERV1 365 691 0 772 155 69 11 chr4 164156088 164156118 -38172229 + L1MA9 LINE L1 6122 6149 -163 4292 108 27 3 chr4 164156118 164156747 -38171600 - LTR9B LTR ERV1 0 644 1 772 155 69 11 chr4 164156747 164156890 -38171457 + L1MA9 LINE L1 6149 6305 -7 1671 227 68 37 chr4 164158178 164158667 -38169680 + MLT1D LTR MaLR 2 505 0 1859 149 10 13 chr4 164158763 164159064 -38169283 + AluJb SINE Alu 3 302 -10 1693 142 31 0 chr4 164159384 164159644 -38168703 + Charlie3 DNA MER1_type 1 268 -2442 354 361 138 31 chr4 164160468 164160989 -38167358 + L2 LINE L2 2256 2832 -482 519 318 69 23 chr4 164161018 164161323 -38167024 + L2 LINE L2 2995 3313 0 355 308 110 16 chr4 164161689 164161871 -38166476 + MIR SINE MIR 20 218 -44 299 331 21 7 chr4 164163306 164163451 -38164896 + L2 LINE L2 1876 2022 -1292 23 0 0 0 chr4 164163679 164163702 -38164645 + AT_rich Low_complexity Low_complexity 1 23 0 272 295 57 0 chr4 164163798 164163920 -38164427 - L1MC4a LINE L1 -1826 5982 5854 355 233 90 122 chr4 164163959 164164204 -38164143 - L1MC4a LINE L1 -2312 5496 5260 35 41 0 0 chr4 164165319 164165368 -38162979 + AT_rich Low_complexity Low_complexity 1 49 0 2267 96 13 0 chr4 164166707 164167009 -38161338 - AluSc SINE Alu -3 306 1 26 0 0 0 chr4 164167248 164167274 -38161073 + AT_rich Low_complexity Low_complexity 1 26 0 26 50 0 0 chr4 164167305 164167345 -38161002 + AT_rich Low_complexity Low_complexity 1 40 0 721 221 7 0 chr4 164167453 164167593 -38160754 + FRAM SINE Alu 5 145 -31 369 0 0 0 chr4 164167599 164167640 -38160707 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1996 136 13 0 chr4 164167874 164168175 -38160172 - AluSx SINE Alu -7 305 1 24 0 0 0 chr4 164168184 164168208 -38160139 + AT_rich Low_complexity Low_complexity 1 24 0 1041 167 0 0 chr4 164168368 164168536 -38159811 - AluSg/x SINE Alu -8 304 137 307 271 170 13 chr4 164168541 164168770 -38159577 - HAL1 LINE L1 -189 2318 2054 229 192 0 41 chr4 164168770 164168843 -38159504 + CT-rich Low_complexity Low_complexity 4 73 0 499 324 20 37 chr4 164168897 164169196 -38159151 - HAL1 LINE L1 -441 2066 1773 459 0 0 0 chr4 164169203 164169254 -38159093 + (TG)n Simple_repeat Simple_repeat 2 52 0 180 295 16 49 chr4 164169292 164169353 -38158994 - L2 LINE L2 -16 3297 3239 17422 181 49 24 chr4 164169382 164169974 -38158373 + ERVL-B1 LTR ERVL 1282 1858 -3853 3537 138 77 39 chr4 164169974 164170663 -38157684 - LTR62 LTR ERVK -4 715 1 17422 181 49 24 chr4 164170663 164171742 -38156605 + ERVL-B1 LTR ERVL 1858 2909 -2802 260 167 0 0 chr4 164171742 164171784 -38156563 - 5S rRNA rRNA -79 42 1 17422 181 49 24 chr4 164171784 164174079 -38154268 + ERVL-B1 LTR ERVL 2909 5427 -284 294 73 0 0 chr4 164174079 164174120 -38154227 + (TG)n Simple_repeat Simple_repeat 2 42 0 17422 181 49 24 chr4 164174120 164174250 -38154097 + ERVL-B1 LTR ERVL 5427 5552 -159 1494 183 26 13 chr4 164174335 164174789 -38153558 - MLT2B1 LTR ERVL -8 512 1 790 142 0 8 chr4 164174801 164174928 -38153419 + ERVL-B1 LTR ERVL 5632 5757 -7 795 231 45 37 chr4 164174928 164175171 -38153176 + MLT2B1 LTR ERVL 1 245 -169 233 296 25 25 chr4 164175262 164175343 -38153004 + MLT2B1 LTR ERVL 336 416 -48 187 68 91 0 chr4 164175344 164175388 -38152959 + (TCTCTG)n Simple_repeat Simple_repeat 5 52 0 255 122 143 0 chr4 164175388 164175437 -38152910 + MLT2C2 LTR ERVL 408 463 -1 2247 101 3 25 chr4 164175462 164175779 -38152568 + AluSx SINE Alu 1 310 -2 369 252 8 34 chr4 164175894 164176013 -38152334 - HAL1 LINE L1 -1569 938 823 259 280 92 72 chr4 164176271 164176564 -38151783 - HAL1 LINE L1 -2098 409 111 2257 99 0 7 chr4 164176623 164176925 -38151422 - AluSg SINE Alu -10 300 1 2170 75 7 0 chr4 164176928 164177207 -38151140 - AluY SINE Alu -8 303 23 5697 152 46 8 chr4 164179115 164180205 -38148142 - L1MC1 LINE L1 0 6333 5202 1092 192 84 4 chr4 164180201 164180462 -38147885 - L1MC1 LINE L1 -1793 4353 4072 * 208 191 0 43 chr4 164181734 164181781 -38146566 + GA-rich Low_complexity Low_complexity 1 45 0 192 77 0 0 chr4 164182061 164182087 -38146260 + (CA)n Simple_repeat Simple_repeat 1 26 0 22 70 0 0 chr4 164182925 164182968 -38145379 + AT_rich Low_complexity Low_complexity 1 43 0 199 374 0 24 chr4 164184045 164184128 -38144219 - L2 LINE L2 -329 2984 2904 216 0 0 0 chr4 164184128 164184152 -38144195 + (TG)n Simple_repeat Simple_repeat 2 25 0 290 308 50 45 chr4 164184197 164184395 -38143952 - L2 LINE L2 -557 2757 2559 217 286 245 10 chr4 164184802 164184900 -38143447 + MIR SINE MIR 16 136 -126 * 1410 272 60 47 chr4 164184897 164185495 -38142852 - L2 LINE L2 -18 3295 2706 1595 177 7 11 chr4 164185495 164185772 -38142575 + AluJb SINE Alu 5 280 -32 1410 272 60 47 chr4 164185772 164185832 -38142515 - L2 LINE L2 -607 2706 2648 2024 146 0 3 chr4 164185832 164186140 -38142207 + AluJo SINE Alu 1 307 -5 1410 272 60 47 chr4 164186140 164186316 -38142031 - L2 LINE L2 -665 2648 2465 1074 280 84 3 chr4 164186324 164186656 -38141691 + LTR40a LTR ERVL 33 391 -128 1684 151 33 30 chr4 164188638 164188942 -38139405 - AluJb SINE Alu -7 305 1 22 0 0 0 chr4 164189170 164189192 -38139155 + AT_rich Low_complexity Low_complexity 1 22 0 410 250 170 0 chr4 164189946 164190058 -38138289 - FLAM_C SINE Alu -1 132 2 318 89 0 47 chr4 164190166 164190242 -38138105 - Alu SINE Alu 0 302 252 22 0 0 0 chr4 164190492 164190514 -38137833 + AT_rich Low_complexity Low_complexity 1 22 0 1758 156 10 7 chr4 164190626 164190915 -38137432 - AluJb SINE Alu -16 296 7 544 298 64 32 chr4 164191330 164191612 -38136735 - L2 LINE L2 0 3313 3023 35 0 0 0 chr4 164192206 164192241 -38136106 + AT_rich Low_complexity Low_complexity 1 35 0 957 196 95 0 chr4 164193492 164193681 -38134666 + AluJo SINE Alu 3 209 -103 251 60 0 80 chr4 164193681 164193731 -38134616 + AluJo SINE Alu 89 134 -168 652 336 100 20 chr4 164193887 164194431 -38133916 - L2 LINE L2 -6 3307 2708 1430 171 40 43 chr4 164194436 164194740 -38133607 - AluJo SINE Alu 0 312 10 1178 179 6 89 chr4 164194741 164194796 -38133551 - L1 LINE L1 -939 5207 5149 739 173 0 43 chr4 164194796 164194935 -38133412 - FLAM_C SINE Alu 0 133 1 1178 179 6 89 chr4 164194935 164195138 -38133209 - L1 LINE L1 -997 5149 4931 1479 214 8 45 chr4 164195138 164195517 -38132830 - MLT1A1 LTR MaLR 0 365 1 1178 179 6 89 chr4 164195517 164195534 -38132813 - L1 LINE L1 -1215 4931 4958 2338 96 0 0 chr4 164195534 164195836 -38132511 - AluSg SINE Alu -8 302 1 1178 179 6 89 chr4 164195836 164195882 -38132465 - L1 LINE L1 -1187 4959 4911 1329 305 60 43 chr4 164195927 164196582 -38131765 - L2 LINE L2 -656 2658 1993 183 299 129 67 chr4 164197155 164197379 -38130968 - L2 LINE L2 -514 2800 2563 2232 109 0 0 chr4 164197413 164197715 -38130632 + AluY SINE Alu 1 302 -9 296 230 0 35 chr4 164198034 164198121 -38130226 + (TATATG)n Simple_repeat Simple_repeat 6 89 0 2277 104 0 0 chr4 164198409 164198718 -38129629 + AluSg SINE Alu 1 309 -1 1420 233 95 88 chr4 164198928 164199494 -38128853 - MLT1E LTR MaLR -23 570 1 245 329 14 56 chr4 164199769 164199912 -38128435 - L2 LINE L2 -772 2542 2406 861 228 28 28 chr4 164200452 164200667 -38127680 - MER58A DNA MER1_type -9 215 1 2012 141 0 7 chr4 164200953 164201251 -38127096 + AluSx SINE Alu 1 296 -16 1365 189 39 39 chr4 164201295 164201607 -38126740 - AluJo SINE Alu 0 312 1 23 0 0 0 chr4 164201749 164201772 -38126575 + AT_rich Low_complexity Low_complexity 1 23 0 1572 181 18 25 chr4 164201789 164202106 -38126241 + AluJb SINE Alu 15 329 0 469 283 57 50 chr4 164202379 164202662 -38125685 - L1ME3A LINE L1 -197 6042 5758 931 251 57 31 chr4 164202678 164203307 -38125040 - L1ME3A LINE L1 -630 5601 4964 626 268 55 45 chr4 164203345 164203816 -38124531 - L1ME3A LINE L1 -1435 4780 4305 502 266 81 32 chr4 164203813 164204159 -38124188 - L1ME3A LINE L1 -2932 3283 2921 * 1946 266 37 19 chr4 164204166 164204734 -38123613 - MLT1E LTR MaLR -2 591 14 533 266 31 10 chr4 164204755 164204947 -38123400 - L1ME3A LINE L1 -3316 2899 2704 735 258 206 31 chr4 164205269 164205808 -38122539 - L1ME3A LINE L1 -4131 2265 1633 354 163 47 35 chr4 164205814 164205900 -38122447 - MER34 LTR ERV1 -7 535 449 2265 108 3 0 chr4 164205932 164206239 -38122108 + AluSx SINE Alu 1 308 -4 233 297 86 39 chr4 164206449 164206577 -38121770 - LTR48B LTR ERV1 -402 242 141 322 191 0 21 chr4 164206654 164206748 -38121599 + CT-rich Low_complexity Low_complexity 1 92 0 1372 144 0 0 chr4 164206767 164206968 -38121379 - AluSg/x SINE Alu -34 278 78 1490 187 17 28 chr4 164207001 164207290 -38121057 - AluJo SINE Alu -26 286 1 263 323 40 33 chr4 164207459 164207735 -38120612 - L1ME3A LINE L1 -4866 1339 1062 26 0 0 0 chr4 164207748 164207774 -38120573 + AT_rich Low_complexity Low_complexity 1 26 0 551 348 90 37 chr4 164210095 164210899 -38117448 + L1M4 LINE L1 3672 4504 -1642 207 0 0 0 chr4 164210932 164210955 -38117392 + (TG)n Simple_repeat Simple_repeat 1 23 0 201 39 0 0 chr4 164210954 164210980 -38117367 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 1052 249 67 0 chr4 164210987 164211300 -38117047 - L1MC4 LINE L1 -1 8041 7708 269 256 16 41 chr4 164212205 164212326 -38116021 + L1P3 LINE L1 5609 5726 -428 307 227 93 0 chr4 164212350 164212447 -38115900 - HAL1b LINE L1 -323 1025 920 5706 108 7 52 chr4 164212535 164213493 -38114854 - L1MA2 LINE L1 0 7723 6809 1956 155 0 0 chr4 164213493 164213796 -38114551 - AluSx SINE Alu -9 303 1 1999 146 13 0 chr4 164213823 164214131 -38114216 - AluSx SINE Alu 0 312 1 17923 169 41 42 chr4 164214131 164215218 -38113129 - L1MA2 LINE L1 -749 6816 5729 1454 203 29 0 chr4 164215218 164215494 -38112853 - AluJb SINE Alu -28 284 1 17923 169 41 42 chr4 164215494 164217158 -38111189 - L1MA2 LINE L1 -1836 5729 4065 2336 101 0 3 chr4 164217158 164217464 -38110883 + AluSx SINE Alu 1 305 -7 17923 169 41 42 chr4 164217464 164217685 -38110662 - L1MA2 LINE L1 -3500 4065 3845 1830 113 63 74 chr4 164217685 164218064 -38110283 + THE1C LTR MaLR 1 375 0 17923 169 41 42 chr4 164218064 164219620 -38108727 - L1MA2 LINE L1 -3720 3845 2289 229 146 0 0 chr4 164219620 164219668 -38108679 + LTR66 LTR ERVL 394 441 -169 572 168 0 0 chr4 164219671 164219766 -38108581 - Alu SINE Alu -10 301 207 17923 169 41 42 chr4 164219766 164221903 -38106444 - L1MA2 LINE L1 -5278 2287 9 1015 256 42 44 chr4 164221923 164222306 -38106041 - HAL1b LINE L1 -451 897 516 1995 130 0 7 chr4 164222615 164222907 -38105440 + AluSx SINE Alu 1 290 -22 928 252 83 29 chr4 164223549 164223970 -38104377 - HAL1b LINE L1 -822 526 83 34 24 0 0 chr4 164225005 164225046 -38103301 + AT_rich Low_complexity Low_complexity 1 41 0 344 318 185 15 chr4 164225434 164225629 -38102718 - MIR SINE MIR 0 262 35 21 0 0 0 chr4 164226791 164226812 -38101535 + AT_rich Low_complexity Low_complexity 1 21 0 1453 187 67 11 chr4 164226828 164227138 -38101209 - AluJb SINE Alu 0 326 2 631 320 48 17 chr4 164227258 164227489 -38100858 - MIR SINE MIR -19 243 6 28 79 0 0 chr4 164227914 164227977 -38100370 + AT_rich Low_complexity Low_complexity 1 63 0 1613 112 0 0 chr4 164228141 164228365 -38099982 - AluSg1 SINE Alu -85 224 1 21 0 0 0 chr4 164229082 164229103 -38099244 + AT_rich Low_complexity Low_complexity 1 21 0 674 309 54 10 chr4 164229164 164229458 -38098889 - MER110 LTR ERV1 0 491 185 298 185 11 110 chr4 164229544 164229650 -38098697 - MER110A LTR ERV1 -308 160 80 1202 96 66 0 chr4 164229800 164229997 -38098350 - L1MA8 LINE L1 -53 6238 6029 3227 156 15 80 chr4 164430671 164431410 -37896937 + LTR8 LTR ERV1 1 691 0 2054 137 7 0 chr4 164431567 164431873 -37896474 + AluSx SINE Alu 1 308 -4 24 103 0 0 chr4 164432030 164432117 -37896230 + AT_rich Low_complexity Low_complexity 1 87 0 410 219 89 0 chr4 164432225 164432348 -37895999 - LTR48 LTR ERV1 -40 747 614 1583 181 127 25 chr4 164432371 164432812 -37895535 - LTR48 LTR ERV1 -301 486 1 526 302 25 6 chr4 164433070 164433229 -37895118 - LTR16A LTR ERVL -49 401 240 680 285 88 58 chr4 164433597 164434064 -37894283 + LTR16C LTR ERVL 6 486 -5 758 260 71 71 chr4 164434348 164434815 -37893532 - MER77 LTR ERV1 -4 601 196 239 307 22 51 chr4 164434879 164435016 -37893331 - MER77 LTR ERV1 -418 187 55 210 71 0 0 chr4 164435021 164435049 -37893298 + (TTA)n Simple_repeat Simple_repeat 3 30 0 953 190 0 0 chr4 164435335 164435493 -37892854 + FRAM SINE Alu 1 158 -18 24 32 0 0 chr4 164435958 164435989 -37892358 + AT_rich Low_complexity Low_complexity 1 31 0 417 227 31 0 chr4 164436658 164436755 -37891592 - MER20 DNA MER1_type -119 100 1 607 356 20 8 chr4 164436804 164437057 -37891290 - MLT1I LTR MaLR -63 346 91 266 317 70 8 chr4 164437161 164437404 -37890943 - L1MEd LINE L1 -4885 1234 977 23 86 0 0 chr4 164437601 164437659 -37890688 + AT_rich Low_complexity Low_complexity 1 58 0 2162 117 0 0 chr4 164437664 164437955 -37890392 + AluSc SINE Alu 1 291 -18 2009 135 32 0 chr4 164439069 164439351 -37888996 + AluSc SINE Alu 1 291 -18 637 193 68 6 chr4 164439513 164439607 -37888740 - THE1C LTR MaLR 0 364 254 1885 123 0 7 chr4 164439607 164439876 -37888471 - AluSx SINE Alu -45 267 1 637 193 68 6 chr4 164439876 164439942 -37888405 - THE1C LTR MaLR -110 254 194 258 231 0 0 chr4 164439954 164440006 -37888341 + LTR30 LTR ERV1 1 52 -670 2150 142 27 59 chr4 164440006 164440450 -37887897 + LTR12 LTR ERV1 53 482 -232 872 159 57 11 chr4 164440451 164440627 -37887720 - THE1C LTR MaLR -191 184 1 210 71 0 0 chr4 164440671 164440699 -37887648 + (GA)n Simple_repeat Simple_repeat 2 29 0 983 177 18 0 chr4 164442315 164442479 -37885868 + FRAM SINE Alu 1 167 -9 375 263 53 30 chr4 164442654 164442787 -37885560 - MIR SINE MIR -5 257 122 * 703 269 35 10 chr4 164442785 164442982 -37885365 - MIR SINE MIR -55 207 6 304 261 70 28 chr4 164443070 164443212 -37885135 - MLT1L LTR MaLR -315 300 153 464 298 258 4 chr4 164443525 164443777 -37884570 - L2 LINE L2 0 3313 2998 323 288 75 71 chr4 164443815 164444027 -37884320 + MIR SINE MIR 50 262 0 191 345 0 24 chr4 164444117 164444201 -37884146 - L2 LINE L2 -423 2890 2809 333 277 32 11 chr4 164444254 164444348 -37883999 + MER5B DNA MER1_type 83 178 0 214 319 32 32 chr4 164445493 164445587 -37882760 - L2 LINE L2 -3 3269 3176 707 215 123 0 chr4 164445926 164446121 -37882226 - MER20 DNA MER1_type 0 219 1 417 250 139 21 chr4 164446646 164446790 -37881557 + MIR SINE MIR 65 225 -37 234 0 0 0 chr4 164447510 164447536 -37880811 + (CA)n Simple_repeat Simple_repeat 1 26 0 360 298 106 12 chr4 164448559 164448720 -37879627 - MIR SINE MIR -14 248 73 2155 73 7 17 chr4 164448750 164449038 -37879309 + AluY SINE Alu 1 285 -26 21 0 0 0 chr4 164449038 164449059 -37879288 + AT_rich Low_complexity Low_complexity 1 21 0 31 58 0 0 chr4 164449503 164449555 -37878792 + AT_rich Low_complexity Low_complexity 1 52 0 198 132 57 0 chr4 164449952 164450005 -37878342 + (TG)n Simple_repeat Simple_repeat 1 56 0 1411 270 60 19 chr4 164450010 164450592 -37877755 - L1M4 LINE L1 -2261 3885 3280 2147 104 0 0 chr4 164450616 164450933 -37877414 - AluSx SINE Alu 0 312 3 22 0 0 0 chr4 164450935 164450957 -37877390 + AT_rich Low_complexity Low_complexity 1 22 0 368 320 133 39 chr4 164450989 164451320 -37877027 - LTR16B LTR ERVL -102 362 1 270 314 59 46 chr4 164451717 164451870 -37876477 - L2 LINE L2 0 3313 3159 2085 128 3 0 chr4 164452569 164452865 -37875482 + AluSg SINE Alu 1 297 -13 24 32 0 0 chr4 164454806 164454837 -37873510 + AT_rich Low_complexity Low_complexity 1 31 0 3102 175 16 29 chr4 164454911 164455558 -37872789 + L1MD1 LINE L1 5603 6240 -2 201 322 99 35 chr4 164456562 164456733 -37871614 + L3 LINE CR1 1096 1277 -300 350 306 100 29 chr4 164456974 164457144 -37871203 + L2 LINE L2 3127 3308 -5 280 312 50 14 chr4 164457154 164457295 -37871052 - MIR SINE MIR -71 191 46 453 370 37 5 chr4 164457955 164458144 -37870203 - MIR3 SINE MIR -10 198 4 435 242 57 0 chr4 164459293 164459417 -37868930 + MIR SINE MIR 103 233 -29 964 115 71 44 chr4 164460069 164460251 -37868096 + MER30B DNA MER1_type 4 190 0 198 323 186 6 chr4 164460330 164460497 -37867850 + L2 LINE L2 2916 3112 -201 * 210 333 51 8 chr4 164460469 164460586 -37867761 + L2 LINE L2 2584 2705 -609 327 181 0 0 chr4 164461469 164461541 -37866806 + (CA)n Simple_repeat Simple_repeat 1 72 0 2402 196 0 0 chr4 164461900 164462399 -37865948 + L1 LINE L1 2232 2730 -3416 9166 69 233 0 chr4 164462502 164463987 -37864360 - L1P LINE L1 -3576 2570 740 2855 89 0 5 chr4 164463989 164464381 -37863966 + L1PA7 LINE L1 5765 6154 0 4984 178 22 39 chr4 164464421 164465511 -37862836 + MER11C LTR ERVK 1 1071 0 195 279 200 7 chr4 164465531 164465671 -37862676 - L2 LINE L2 -177 3136 2970 21 57 0 0 chr4 164466433 164466468 -37861879 + AT_rich Low_complexity Low_complexity 1 35 0 310 254 42 76 chr4 164466701 164466819 -37861528 - MIR SINE MIR -63 145 32 23 33 0 0 chr4 164466911 164466941 -37861406 + AT_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr4 164467734 164467761 -37860586 + (TAAAA)n Simple_repeat Simple_repeat 1 27 0 3737 128 53 2 chr4 164467868 164468472 -37859875 + MER41B LTR ERV1 1 635 0 2321 183 13 11 chr4 164468814 164469278 -37859069 - MER4C LTR ERV1 0 465 1 330 236 146 24 chr4 164469546 164469669 -37858678 - MIR SINE MIR -44 218 81 1531 196 152 6 chr4 164469670 164470033 -37858314 - LTR36 LTR ERV1 0 611 196 976 162 0 0 chr4 164470050 164470227 -37858120 - AluSg/x SINE Alu 0 304 128 479 333 19 9 chr4 164470937 164471153 -37857194 + Tigger8 DNA MER2_type 24 241 -425 1711 185 0 17 chr4 164471289 164471581 -37856766 + AluSx SINE Alu 1 287 -25 287 121 93 0 chr4 164471581 164471721 -37856626 + (TA)n Simple_repeat Simple_repeat 1 153 0 370 316 144 16 chr4 164473027 164473214 -37855133 + MIR SINE MIR 2 212 -50 3804 80 54 0 chr4 164475346 164475885 -37852462 - L1PB2 LINE L1 -2 6149 5582 2246 110 7 3 chr4 164475885 164476232 -37852115 + AluSc SINE Alu 1 348 0 1036 221 132 92 chr4 164476446 164476967 -37851380 + MLT1F1 LTR MaLR 1 567 0 931 287 81 79 chr4 164477162 164477499 -37850848 + L2 LINE L2 2804 3144 -169 1904 154 43 14 chr4 164477499 164477850 -37850497 + MER46B DNA MER2_type 1 236 0 931 287 81 79 chr4 164477850 164478021 -37850326 + L2 LINE L2 3144 3313 0 369 256 0 107 chr4 164478024 164478145 -37850202 + L2 LINE L2 3195 3302 -11 775 205 60 0 chr4 164478658 164478824 -37849523 + MER45A DNA AcHobo 2 177 -1 1359 145 38 0 chr4 164479044 164479279 -37849068 + AluJb SINE Alu 1 244 -68 198 0 0 0 chr4 164479366 164479388 -37848959 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 42 0 0 0 chr4 164480343 164480385 -37847962 + AT_rich Low_complexity Low_complexity 1 42 0 34 55 0 0 chr4 164481051 164481106 -37847241 + AT_rich Low_complexity Low_complexity 1 55 0 646 129 8 83 chr4 164481460 164481592 -37846755 - MER1B DNA MER1_type -1 338 217 25 65 0 0 chr4 164482309 164482355 -37845992 + AT_rich Low_complexity Low_complexity 1 46 0 1972 154 0 56 chr4 164482506 164482863 -37845484 - MER1B DNA MER1_type 0 337 1 2368 83 0 0 chr4 164484296 164484585 -37843762 - AluSg SINE Alu -11 299 11 380 298 106 37 chr4 164486122 164486180 -37842167 - MIR3 SINE MIR -3 205 152 1836 120 6 96 chr4 164486180 164486513 -37841834 - AluSx SINE Alu -9 303 1 380 298 106 37 chr4 164486513 164486615 -37841732 - MIR3 SINE MIR -56 152 34 22 0 0 0 chr4 164487209 164487231 -37841116 + AT_rich Low_complexity Low_complexity 1 22 0 1824 178 0 3 chr4 164487242 164487551 -37840796 + AluJb SINE Alu 1 308 -4 33 85 0 0 chr4 164488036 164488118 -37840229 + AT_rich Low_complexity Low_complexity 1 82 0 1139 277 88 31 chr4 164489360 164489815 -37838532 - L2 LINE L2 0 3313 2833 2693 71 8 3 chr4 164489824 164490177 -37838170 - THE1A LTR MaLR 0 355 1 11165 93 28 3 chr4 164490177 164491719 -37836628 - THE1A-int LTR MaLR 0 1580 1 2735 66 9 0 chr4 164491719 164492069 -37836278 - THE1A LTR MaLR -2 353 1 2127 187 20 18 chr4 164493726 164494121 -37834226 - MER61B LTR ERV1 -29 396 1 394 281 19 31 chr4 164494712 164494872 -37833475 + L1ME LINE L1 5477 5634 -532 225 250 0 18 chr4 164494880 164494936 -37833411 + (TG)n Simple_repeat Simple_repeat 2 56 0 272 245 104 38 chr4 164495306 164495412 -37832935 + MLT1H1 LTR MaLR 379 491 -64 219 114 0 0 chr4 164495470 164495505 -37832842 + (GA)n Simple_repeat Simple_repeat 2 36 0 317 311 10 0 chr4 164495964 164496067 -37832280 - L1ME LINE L1 -382 5739 5636 947 169 5 33 chr4 164496194 164496378 -37831969 - AluJo SINE Alu -14 298 120 368 280 21 21 chr4 164496385 164496528 -37831819 + L1ME LINE L1 5681 5823 -298 288 68 356 0 chr4 164497025 164497084 -37831263 + MADE1 DNA Mariner 1 80 0 453 296 20 13 chr4 164497086 164497238 -37831109 + L2 LINE L2 3161 3313 0 448 223 7 14 chr4 164497771 164497910 -37830437 - L1MC4a LINE L1 -757 7051 6914 2026 99 22 0 chr4 164498763 164499036 -37829311 - AluSc SINE Alu -10 299 21 685 270 59 25 chr4 164500204 164500408 -37827939 + MIR SINE MIR 8 218 -44 24 77 0 0 chr4 164500546 164500598 -37827749 + AT_rich Low_complexity Low_complexity 1 52 0 621 184 0 9 chr4 164501532 164501641 -37826706 + MER33 DNA MER1_type 1 108 -216 625 173 87 5 chr4 164502120 164502305 -37826042 + MER33 DNA MER1_type 124 323 -40 2293 99 0 0 chr4 164502391 164502685 -37825662 - AluSg SINE Alu -14 296 3 23 0 0 0 chr4 164503290 164503313 -37825034 + AT_rich Low_complexity Low_complexity 1 23 0 1881 137 18 0 chr4 164503549 164503834 -37824513 - AluSx SINE Alu -22 290 1 2765 166 12 2 chr4 164504224 164504707 -37823640 - MER41B LTR ERV1 -1 634 147 1250 175 11 84 chr4 164504704 164504990 -37823357 - MER41C LTR ERV1 -289 265 1 * 323 295 102 12 chr4 164505017 164505183 -37823164 - MIR3 SINE MIR -9 199 19 22 0 0 0 chr4 164505536 164505558 -37822789 + AT_rich Low_complexity Low_complexity 1 22 0 36 62 0 0 chr4 164505875 164505939 -37822408 + AT_rich Low_complexity Low_complexity 1 64 0 363 268 92 20 chr4 164506249 164506402 -37821945 - MIR SINE MIR -63 199 36 233 354 165 20 chr4 164506931 164507228 -37821119 - L2 LINE L2 0 3272 2933 292 314 70 43 chr4 164507294 164507479 -37820868 - L2 LINE L2 -556 2758 2569 281 333 78 0 chr4 164507516 164507618 -37820729 + L2 LINE L2 3190 3299 -14 25 65 0 0 chr4 164508025 164508071 -37820276 + AT_rich Low_complexity Low_complexity 1 46 0 273 268 0 0 chr4 164508938 164508994 -37819353 - L2 LINE L2 -8 3305 3250 2252 63 0 0 chr4 164511131 164511418 -37816929 - L1PA8 LINE L1 0 6172 5886 1988 121 7 0 chr4 164516427 164516731 -37811616 + AluSx SINE Alu 1 306 0 21 71 0 0 chr4 164517752 164517794 -37810553 + AT_rich Low_complexity Low_complexity 1 42 0 2019 114 15 0 chr4 164517799 164518103 -37810244 - AluSg SINE Alu 0 313 6 22 0 0 0 chr4 164518589 164518611 -37809736 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr4 164520312 164520349 -37807998 + AT_rich Low_complexity Low_complexity 1 37 0 207 308 39 0 chr4 164520720 164520798 -37807549 - MIR SINE MIR -80 128 48 214 233 0 23 chr4 164521994 164522037 -37806310 - MER91A DNA MER1_type -131 65 24 386 311 40 61 chr4 164522107 164522188 -37806159 + L1ME LINE L1 5406 5487 -634 2223 117 0 3 chr4 164522188 164522487 -37805860 + AluSx SINE Alu 1 298 -14 386 311 40 61 chr4 164522487 164522733 -37805614 + L1ME LINE L1 5487 5726 -395 1488 95 0 14 chr4 164523804 164524015 -37804332 - AluSg/x SINE Alu 0 310 103 4284 103 5 92 chr4 164524639 164525397 -37802950 - L1PA15 LINE L1 -5 6160 5469 2480 56 0 3 chr4 164526267 164526570 -37801777 + AluY SINE Alu 1 302 -9 403 271 148 74 chr4 164528051 164528295 -37800052 + MIR SINE MIR 1 262 0 189 0 0 0 chr4 164528741 164528762 -37799585 + (TTG)n Simple_repeat Simple_repeat 1 21 0 307 288 6 88 chr4 164529636 164529796 -37798551 + MIR SINE MIR 66 212 -50 250 291 201 30 chr4 164529940 164530074 -37798273 + MIR SINE MIR 77 233 -29 2087 151 30 33 chr4 164530074 164530439 -37797908 + THE1B LTR MaLR 1 364 0 2026 199 101 5 chr4 164531076 164531512 -37796835 + MLT1D LTR MaLR 28 505 0 1631 219 48 17 chr4 164531565 164531922 -37796425 + MLT1A2 LTR MaLR 4 371 -3 339 294 55 0 chr4 164532190 164532299 -37796048 - LTR67 LTR ERVL -3 554 440 229 310 51 51 chr4 164533377 164533535 -37794812 - MER5A DNA MER1_type -31 158 1 22 0 0 0 chr4 164534047 164534069 -37794278 + GC_rich Low_complexity Low_complexity 1 22 0 204 170 85 0 chr4 164534424 164534471 -37793876 + MIR SINE MIR 199 249 -13 389 301 114 25 chr4 164534522 164534758 -37793589 + MLT1J1 LTR MaLR 77 333 -113 1695 232 48 5 chr4 164535738 164536131 -37792216 - LTR40b LTR ERVL -30 432 23 1189 209 35 44 chr4 164536143 164536496 -37791851 - HERVL40 LTR ERVL -1 5529 2783 368 309 98 55 chr4 164536395 164536774 -37791573 - MER89-int LTR ERV1 -325 6476 6082 * 1653 190 97 46 chr4 164536854 164537103 -37791244 + MLT2B1 LTR ERVL 1 283 -237 1936 153 61 17 chr4 164537103 164537462 -37790885 - THE1C LTR MaLR 0 375 1 1653 190 97 46 chr4 164537462 164537644 -37790703 + MLT2B1 LTR ERVL 283 454 -66 16666 192 29 18 chr4 164537672 164540823 -37787524 + ERVL-B1 LTR ERVL 2 3187 -2577 707 260 39 14 chr4 164540808 164541016 -37787331 - HERVL40 LTR ERVL -2114 3416 3204 * 2050 271 24 8 chr4 164541011 164541547 -37786800 - HERVL40 LTR ERVL -2457 3073 2529 2347 295 60 31 chr4 164541554 164542487 -37785860 - HERVL40 LTR ERVL -3920 1610 651 2101 199 9 19 chr4 164542487 164542918 -37785429 - MLT1C LTR MaLR 0 467 41 321 286 33 0 chr4 164542941 164543032 -37785315 - HERVL40 LTR ERVL -4873 657 564 857 272 29 0 chr4 164543034 164543240 -37785107 - HERVL40 LTR ERVL -4917 613 402 1502 136 42 0 chr4 164543271 164543536 -37784811 + L1MA8 LINE L1 6011 6286 -5 993 289 26 13 chr4 164543704 164544012 -37784335 - HERVL40 LTR ERVL -5202 328 17 1668 214 58 29 chr4 164544024 164544473 -37783874 - LTR40b LTR ERVL 0 462 1 34 42 0 0 chr4 164544609 164544657 -37783690 + AT_rich Low_complexity Low_complexity 1 48 0 436 178 93 25 chr4 164545732 164545850 -37782497 + Charlie7 DNA MER1_type 30 155 -2457 195 42 0 0 chr4 164546271 164546295 -37782052 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 26 0 0 0 chr4 164546472 164546498 -37781849 + AT_rich Low_complexity Low_complexity 1 26 0 288 149 0 0 chr4 164548883 164548930 -37779417 + L2 LINE L2 3267 3313 0 375 211 83 9 chr4 164549697 164549806 -37778541 - L1MC4 LINE L1 0 8042 7926 21 0 0 0 chr4 164552224 164552245 -37776102 + AT_rich Low_complexity Low_complexity 1 21 0 193 275 12 38 chr4 164552723 164552803 -37775544 - L3 LINE CR1 -859 718 641 311 231 0 0 chr4 164553209 164553274 -37775073 + MIR SINE MIR 133 197 -65 380 284 185 10 chr4 164553295 164553608 -37774739 + L1ME4a LINE L1 5435 5802 -362 418 284 93 21 chr4 164553630 164553824 -37774523 - MER63A DNA MER1_type -1 209 2 36 53 0 0 chr4 164554212 164554269 -37774078 + AT_rich Low_complexity Low_complexity 1 57 0 23 33 0 0 chr4 164555654 164555684 -37772663 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 164555949 164555971 -37772376 + AT_rich Low_complexity Low_complexity 1 22 0 350 273 56 7 chr4 164555982 164556125 -37772222 + L1ME4a LINE L1 5952 6101 -20 21 0 0 0 chr4 164556130 164556151 -37772196 + AT_rich Low_complexity Low_complexity 1 21 0 385 287 139 44 chr4 164556769 164557020 -37771327 - L2 LINE L2 -11 3302 3028 * 1648 303 114 29 chr4 164557010 164558072 -37770275 - L2 LINE L2 -836 2478 1327 1952 137 3 0 chr4 164558072 164558404 -37769943 + AluSx SINE Alu 3 335 0 1226 272 65 67 chr4 164558827 164559519 -37768828 + MER21B LTR ERV1 24 714 -149 1815 188 3 3 chr4 164560747 164561050 -37767297 - AluJo SINE Alu -9 303 1 398 265 88 27 chr4 164561407 164561554 -37766793 + MIR3 SINE MIR 23 178 -30 378 0 0 0 chr4 164561652 164561694 -37766653 + (TAGA)n Simple_repeat Simple_repeat 3 44 0 1279 244 161 51 chr4 164563127 164563655 -37764692 + MLT1G LTR MaLR 1 586 -4 275 254 0 0 chr4 164564513 164564572 -37763775 + LTR67 LTR ERVL 437 495 -62 898 294 101 25 chr4 164565785 164566259 -37762088 + L2 LINE L2 2757 3259 -54 256 178 0 0 chr4 164567609 164567654 -37760693 + L2 LINE L2 3232 3276 -37 244 310 134 14 chr4 164567754 164567896 -37760451 - MIR SINE MIR -89 173 15 204 221 58 29 chr4 164569299 164569403 -37758944 + CT-rich Low_complexity Low_complexity 1 107 0 340 280 59 60 chr4 164569550 164569638 -37758709 + L1MC4a LINE L1 5689 5776 -355 1684 146 0 4 chr4 164569638 164569899 -37758448 + AluSx SINE Alu 39 298 -14 340 280 59 60 chr4 164569899 164570021 -37758326 + L1MC4a LINE L1 5776 5898 -233 21 0 0 0 chr4 164570117 164570138 -37758209 + AT_rich Low_complexity Low_complexity 1 21 0 2826 216 51 47 chr4 164572057 164572182 -37756165 - LTR62 LTR ERVK -4 715 592 2159 117 3 0 chr4 164572182 164572480 -37755867 - AluSx SINE Alu -13 299 1 2826 216 51 47 chr4 164572480 164573064 -37755283 - LTR62 LTR ERVK -127 592 3 340 269 149 14 chr4 164573094 164573235 -37755112 + MIR SINE MIR 103 262 0 2056 120 6 28 chr4 164573895 164574212 -37754135 + AluSg SINE Alu 1 310 0 2043 198 32 0 chr4 164574392 164574797 -37753550 + MER47B DNA MER2_type 1 418 0 253 320 13 0 chr4 164575026 164575101 -37753246 - L2 LINE L2 -888 2426 2351 588 253 65 12 chr4 164575109 164575279 -37753068 - LTR16C LTR ERVL -65 426 248 264 345 12 12 chr4 164575558 164575642 -37752705 - MIR SINE MIR -173 89 6 236 62 0 78 chr4 164576069 164576133 -37752214 + (TAA)n Simple_repeat Simple_repeat 3 61 0 1058 274 53 50 chr4 164577680 164578096 -37750251 + MLT1J LTR MaLR 1 417 -94 3515 102 4 8 chr4 164578541 164579052 -37749295 - MER9 LTR ERVK 0 511 3 2349 70 0 20 chr4 164580144 164580443 -37747904 - AluY SINE Alu -18 293 1 217 122 73 0 chr4 164582196 164582237 -37746110 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 702 113 0 0 chr4 164584801 164584907 -37743440 + HERVL-A2 LTR ERVL 5541 5646 -8 1858 166 83 26 chr4 164584908 164585430 -37742917 + MLT2A2 LTR ERVL 1 554 0 370 262 93 84 chr4 164585473 164585687 -37742660 - MIR SINE MIR -41 221 6 21 36 0 0 chr4 164586569 164586597 -37741750 + AT_rich Low_complexity Low_complexity 1 28 0 384 331 16 16 chr4 164587662 164587789 -37740558 + MIR SINE MIR 20 146 -116 217 256 64 0 chr4 164588165 164588243 -37740104 + MIR SINE MIR 173 255 -7 935 204 68 26 chr4 164589064 164589328 -37739019 + ORSL DNA AcHobo 1 275 0 327 316 73 58 chr4 164589625 164589831 -37738516 + MIR SINE MIR 20 228 -34 315 0 59 20 chr4 164589956 164590007 -37738340 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 2459 35 0 3 chr4 164590513 164590798 -37737549 + AluY SINE Alu 19 302 -9 210 256 0 0 chr4 164592084 164592127 -37736220 - L2 LINE L2 -499 2815 2773 23 33 0 0 chr4 164593276 164593306 -37735041 + AT_rich Low_complexity Low_complexity 1 30 0 276 375 108 0 chr4 164593473 164593593 -37734754 - L2 LINE L2 -250 3063 2931 1222 334 75 42 chr4 164593664 164594550 -37733797 - L2 LINE L2 -499 2815 1901 609 327 10 10 chr4 164594622 164594830 -37733517 - MIR SINE MIR -43 219 12 25 31 0 0 chr4 164595288 164595320 -37733027 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr4 164595633 164595668 -37732679 + AT_rich Low_complexity Low_complexity 1 35 0 250 189 0 27 chr4 164596955 164597029 -37731318 + GA-rich Low_complexity Low_complexity 2 73 0 474 125 0 0 chr4 164597130 164597210 -37731137 + (GGAGA)n Simple_repeat Simple_repeat 2 81 0 23 33 0 0 chr4 164597823 164597853 -37730494 + AT_rich Low_complexity Low_complexity 1 30 0 370 329 14 14 chr4 164598730 164598873 -37729474 + CT-rich Low_complexity Low_complexity 3 145 0 184 267 83 17 chr4 164600135 164600195 -37728152 + MIR SINE MIR 81 144 -64 190 318 11 45 chr4 164600380 164600468 -37727879 + L2 LINE L2 3188 3272 0 593 319 44 17 chr4 164600761 164600997 -37727350 - MIR SINE MIR 0 262 25 1482 135 0 9 chr4 164603976 164604229 -37724118 + AluSg/x SINE Alu 72 322 0 455 195 0 11 chr4 164604238 164604325 -37724022 + MER97c DNA MER1_type? 132 217 -873 348 307 66 30 chr4 164604471 164604637 -37723710 + MIR3 SINE MIR 32 203 -5 838 168 0 0 chr4 164605440 164605571 -37722776 - FLAM_C SINE Alu 0 133 3 285 268 24 41 chr4 164606450 164606573 -37721774 + LTR16C LTR ERVL 371 491 0 34 55 0 0 chr4 164607201 164607256 -37721091 + AT_rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr4 164607410 164607438 -37720909 + AT_rich Low_complexity Low_complexity 1 28 0 37 69 0 0 chr4 164607476 164607548 -37720799 + AT_rich Low_complexity Low_complexity 1 72 0 22 0 0 0 chr4 164607613 164607635 -37720712 + AT_rich Low_complexity Low_complexity 1 22 0 268 254 14 0 chr4 164607661 164607732 -37720615 - MER116 DNA Mariner -2 78 7 3607 122 63 40 chr4 164607840 164608934 -37719413 + MER11A LTR ERVK 1 1236 0 2856 13 0 0 chr4 164609222 164609532 -37718815 + AluYb8 SINE Alu 1 310 -8 21503 49 0 0 chr4 164609623 164613105 -37715242 - L1PA5 LINE L1 -2 6152 2671 1379 175 110 137 chr4 164613205 164613458 -37714889 - LTR36 LTR ERV1 -133 478 242 2068 121 0 0 chr4 164613458 164613762 -37714585 - AluSg SINE Alu 0 304 1 1379 175 110 137 chr4 164613762 164613998 -37714349 - LTR36 LTR ERV1 -369 242 1 214 275 75 62 chr4 164613998 164614078 -37714269 - MIR3 SINE MIR -124 84 4 721 191 45 0 chr4 164614820 164614977 -37713370 + MER33 DNA MER1_type 19 182 -142 1803 142 0 0 chr4 164615003 164615264 -37713083 + AluSx SINE Alu 1 261 -51 554 101 0 0 chr4 164615264 164615343 -37713004 + Alu SINE Alu 221 299 -10 311 192 128 0 chr4 164615346 164615424 -37712923 + MER33 DNA MER1_type 268 355 -8 1825 305 160 40 chr4 164615431 164615927 -37712420 + L2 LINE L2 801 1236 -2078 1665 199 0 16 chr4 164615927 164616244 -37712103 - AluSx SINE Alu 0 312 1 1825 305 160 40 chr4 164616244 164616806 -37711541 + L2 LINE L2 1236 1986 -1328 616 233 104 84 chr4 164616807 164617040 -37711307 - MLT1C LTR MaLR -151 316 74 2310 101 3 0 chr4 164617040 164617347 -37711000 + AluSc SINE Alu 1 308 -1 616 233 104 84 chr4 164617347 164617400 -37710947 - MLT1C LTR MaLR -393 74 24 294 215 152 0 chr4 164617435 164617514 -37710833 - MLT1C LTR MaLR -353 114 24 2265 105 0 0 chr4 164618221 164618515 -37709832 + AluSg SINE Alu 1 294 -16 2536 109 17 0 chr4 164619124 164619482 -37708865 + THE1B LTR MaLR 1 364 0 9227 110 88 31 chr4 164619482 164620244 -37708103 + THE1B-int LTR MaLR 1 718 -862 2585 17 3 0 chr4 164620244 164620581 -37707766 + L1PA3 LINE L1 5846 6183 0 9227 110 88 31 chr4 164620581 164621312 -37707035 + THE1B-int LTR MaLR 718 1580 0 463 87 8 13 chr4 164621312 164621376 -37706971 + THE1B LTR MaLR 1 35 -329 237 67 0 0 chr4 164621376 164621406 -37706941 + MER61B LTR ERV1 1 30 -395 2067 168 25 14 chr4 164621443 164621807 -37706540 + MER61B LTR ERV1 29 396 -29 3291 168 64 91 chr4 164621818 164622446 -37705901 + MER61B-int LTR ERV1 1 600 -4617 1863 158 0 13 chr4 164622446 164622750 -37705597 - AluSx SINE Alu -12 300 1 3291 168 64 91 chr4 164622750 164622985 -37705362 + MER61B-int LTR ERV1 600 840 -4377 12155 113 33 18 chr4 164622986 164626475 -37701872 + MER61B-int LTR ERV1 959 4622 -595 2344 118 0 0 chr4 164626475 164626788 -37701559 - AluSq SINE Alu 0 313 1 12155 113 33 18 chr4 164626788 164627394 -37700953 + MER61B-int LTR ERV1 4622 5217 0 2433 148 20 10 chr4 164627394 164627786 -37700561 + MER61B LTR ERV1 1 396 -29 2067 130 3 0 chr4 164627808 164628101 -37700246 + THE1B LTR MaLR 71 364 0 1687 286 97 34 chr4 164628160 164629140 -37699207 + L1MC4 LINE L1 7000 8041 -1 1858 169 0 0 chr4 164629210 164629500 -37698847 - AluSx SINE Alu -22 290 1 193 182 23 45 chr4 164629560 164629604 -37698743 - L2 LINE L2 -78 3235 3193 28 0 0 0 chr4 164630098 164630126 -37698221 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 164630608 164630637 -37697710 + AT_rich Low_complexity Low_complexity 1 29 0 6887 119 19 7 chr4 164631127 164632138 -37696209 + THE1B-int LTR MaLR 558 1580 0 2437 131 14 0 chr4 164632138 164632497 -37695850 + THE1B LTR MaLR 1 364 0 31 44 0 0 chr4 164634552 164634597 -37693750 + AT_rich Low_complexity Low_complexity 1 45 0 449 260 119 64 chr4 164634947 164635182 -37693165 - MIR SINE MIR 0 262 15 702 186 0 8 chr4 164636555 164636673 -37691674 - FLAM_C SINE Alu -16 117 1 406 320 0 0 chr4 164636977 164637077 -37691270 + MER45 DNA AcHobo 1 100 -940 * 761 215 12 12 chr4 164637072 164637235 -37691112 - MER76 LTR ERV -512 176 14 310 261 151 8 chr4 164637251 164637370 -37690977 + MIR SINE MIR 63 198 -64 340 230 20 60 chr4 164637632 164637732 -37690615 + L1M4b LINE L1 9 104 -6755 708 259 99 4 chr4 164637750 164637982 -37690365 + MLT1C LTR MaLR 10 263 -204 2339 244 122 21 chr4 164637990 164638880 -37689467 + L1M4b LINE L1 2880 3860 -3097 21 0 0 0 chr4 164639402 164639423 -37688924 + AT_rich Low_complexity Low_complexity 1 21 0 654 217 82 0 chr4 164639492 164639699 -37688648 - Charlie2a DNA MER1_type -1889 973 750 * 730 253 102 23 chr4 164639684 164639989 -37688358 - Charlie2a DNA MER1_type -2361 501 173 185 292 46 77 chr4 164640142 164640207 -37688140 - MIR3 SINE MIR -145 63 1 356 175 60 38 chr4 164640317 164640503 -37687844 - MER97b DNA MER1_type? -35 1018 827 1641 197 24 90 chr4 164640531 164641231 -37687116 + MER4A LTR ERV1 1 462 -3 252 221 65 0 chr4 164641730 164641807 -37686540 - MER97c DNA MER1_type? -539 551 470 326 222 119 16 chr4 164641821 164641947 -37686400 - LTR37A LTR ERV1 -12 414 276 1799 183 0 7 chr4 164642312 164642612 -37685735 + AluJb SINE Alu 1 298 -14 28 29 0 0 chr4 164642703 164642738 -37685609 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr4 164642751 164642793 -37685554 + AT_rich Low_complexity Low_complexity 1 42 0 507 264 21 0 chr4 164643094 164643234 -37685113 - MER110 LTR ERV1 -31 460 318 2151 193 92 20 chr4 164643429 164643983 -37684364 - LTR49 LTR ERV1 0 595 2 270 143 0 0 chr4 164643989 164644038 -37684309 + (TA)n Simple_repeat Simple_repeat 2 50 0 182 125 0 25 chr4 164644039 164644079 -37684268 + (TAAAA)n Simple_repeat Simple_repeat 3 41 0 321 311 78 28 chr4 164644393 164644573 -37683774 - MIR SINE MIR -5 257 69 697 220 21 21 chr4 164644573 164645101 -37683246 - MLT2F LTR ERVL 0 663 1 256 326 47 0 chr4 164645154 164645240 -37683107 - L2 LINE L2 -248 3024 2935 256 55 110 22 chr4 164646093 164646184 -37682163 + (TA)n Simple_repeat Simple_repeat 2 100 0 615 308 126 39 chr4 164646582 164646995 -37681352 - MLT1K LTR MaLR -2 586 138 1594 150 18 32 chr4 164649212 164649545 -37678802 - MER4A LTR ERV1 -17 647 261 15828 118 76 67 chr4 164649624 164651988 -37676359 - LTR1B-int LTR ERV1 -14 6584 4242 2020 148 3 3 chr4 164651988 164652298 -37676049 - AluSx SINE Alu -2 310 1 15828 118 76 67 chr4 164652298 164654557 -37673790 - LTR1B-int LTR ERV1 -2356 4242 503 347 125 18 0 chr4 164654533 164654589 -37673758 - LTR1B-int LTR ERV1 -5706 892 836 * 293 185 130 22 chr4 164654621 164654713 -37673634 - LTR1B-int LTR ERV1 -5746 852 751 812 182 23 39 chr4 164655073 164655405 -37672942 - LTR1B-int LTR ERV1 -5927 671 304 501 208 195 0 chr4 164655472 164655626 -37672721 - LTR1B-int LTR ERV1 -6414 184 1 348 307 74 48 chr4 164656372 164656567 -37671780 + MIR SINE MIR 12 215 -47 2781 136 2 7 chr4 164656567 164656994 -37671353 + MER61B LTR ERV1 1 425 0 348 307 74 48 chr4 164656994 164657029 -37671318 + MIR SINE MIR 215 248 -14 614 248 130 9 chr4 164658204 164658434 -37669913 + MIR SINE MIR 2 259 -3 4171 123 3 56 chr4 164658513 164659211 -37669136 - LTR8 LTR ERV1 0 691 31 288 183 53 23 chr4 164659211 164659342 -37669005 + A-rich Low_complexity Low_complexity 2 136 0 324 0 0 0 chr4 164660353 164660389 -37667958 + (TG)n Simple_repeat Simple_repeat 2 37 0 357 291 111 0 chr4 164660441 164660558 -37667789 + MIR SINE MIR 77 206 -56 195 129 0 0 chr4 164660754 164660785 -37667562 + (TGGA)n Simple_repeat Simple_repeat 4 34 0 212 264 8 0 chr4 164661876 164662001 -37666346 + (TG)n Simple_repeat Simple_repeat 2 127 0 190 302 147 39 chr4 164663182 164663311 -37665036 - MIR3 SINE MIR -5 203 61 248 229 42 62 chr4 164663368 164663464 -37664883 - MIR SINE MIR -55 207 114 22 0 0 0 chr4 164663889 164663911 -37664436 + AT_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chr4 164664300 164664325 -37664022 + (T)n Simple_repeat Simple_repeat 1 25 0 3700 176 61 8 chr4 164664344 164665126 -37663221 - LTR1B LTR ERV1 0 826 3 254 307 69 65 chr4 164666549 164666826 -37661521 - L2 LINE L2 0 3313 3036 706 252 279 24 chr4 164666836 164667173 -37661174 - L2 LINE L2 -649 2665 2243 413 376 45 15 chr4 164667316 164667518 -37660829 - MIR SINE MIR -2 260 53 2248 67 0 11 chr4 164667940 164668248 -37660099 - AluY SINE Alu 0 305 1 1294 152 12 20 chr4 164668917 164669167 -37659180 + L1MB3 LINE L1 5934 6181 -2 312 203 95 0 chr4 164670052 164670126 -37658221 + L1MCa LINE L1 1995 2075 -4351 253 291 23 12 chr4 164670137 164670223 -37658124 + L2 LINE L2 3186 3272 0 1986 132 0 35 chr4 164670979 164671289 -37657058 - AluSx SINE Alu -13 299 1 1132 144 0 11 chr4 164671317 164671505 -37656842 - MER30B DNA MER1_type -1 189 4 2347 140 27 60 chr4 164671781 164671971 -37656376 - Tigger2a DNA MER2_type -2274 434 239 2213 90 40 0 chr4 164671971 164672270 -37656077 - AluY SINE Alu 0 311 1 2347 140 27 60 chr4 164672270 164672528 -37655819 - Tigger2a DNA MER2_type -2469 239 1 2857 151 17 21 chr4 164673901 164674393 -37653954 + L1MC2 LINE L1 5807 6298 -46 315 0 0 0 chr4 164674393 164674428 -37653919 + (TG)n Simple_repeat Simple_repeat 2 36 0 2857 151 17 21 chr4 164674428 164674452 -37653895 + L1MC2 LINE L1 6298 6321 -23 2042 120 0 17 chr4 164674461 164674761 -37653586 + AluSx SINE Alu 3 297 -15 2065 123 47 9 chr4 164674994 164675336 -37653011 + THE1A LTR MaLR 1 355 0 21 0 0 0 chr4 164675536 164675557 -37652790 + AT_rich Low_complexity Low_complexity 1 21 0 274 111 67 0 chr4 164676041 164676086 -37652261 + MADE1 DNA Mariner 1 48 -32 189 0 0 0 chr4 164676624 164676645 -37651702 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 242 362 71 14 chr4 164678190 164678331 -37650016 + MIR SINE MIR 1 149 -113 1821 241 60 31 chr4 164678371 164678977 -37649370 + MLT1E2 LTR MaLR 7 626 0 2044 98 6 64 chr4 164680110 164680244 -37648103 + AluSx SINE Alu 1 141 -171 2371 77 0 13 chr4 164680244 164680557 -37647790 + AluY SINE Alu 1 309 -2 2044 98 6 64 chr4 164680557 164680749 -37647598 + AluSx SINE Alu 141 308 -4 23 33 0 0 chr4 164683094 164683124 -37645223 + AT_rich Low_complexity Low_complexity 1 30 0 924 277 78 40 chr4 164684063 164684460 -37643887 - MLT1G1 LTR MaLR -183 412 1 2198 54 0 48 chr4 164684627 164684945 -37643402 + AluY SINE Alu 1 304 0 30 59 0 0 chr4 164685312 164685363 -37642984 + AT_rich Low_complexity Low_complexity 1 51 0 206 363 145 35 chr4 164686692 164687146 -37641201 - L2 LINE L2 -340 2974 2471 651 148 40 27 chr4 164687541 164687690 -37640657 - MER3 DNA MER1_type 0 2517 2367 276 100 0 0 chr4 164687691 164687731 -37640616 + (TATG)n Simple_repeat Simple_repeat 3 42 0 921 122 7 29 chr4 164687731 164687870 -37640477 - AluJb SINE Alu -30 282 147 284 262 36 12 chr4 164687870 164687954 -37640393 - MER3 DNA MER1_type -86 123 38 2030 160 31 3 chr4 164689752 164690102 -37638245 + MER46B DNA MER2_type 2 236 0 450 266 140 43 chr4 164690226 164690335 -37638012 - L1ME4a LINE L1 -180 5941 5844 1918 120 0 0 chr4 164690335 164690602 -37637745 - AluSx SINE Alu -14 298 32 450 266 140 43 chr4 164690602 164691006 -37637341 - L1ME4a LINE L1 -277 5844 5378 1809 153 0 13 chr4 164691419 164691720 -37636627 + AluJb SINE Alu 1 297 -15 23 0 0 0 chr4 164692319 164692342 -37636005 + AT_rich Low_complexity Low_complexity 1 23 0 1838 245 100 22 chr4 164692360 164693026 -37635321 - L2 LINE L2 -9 3304 2537 1665 71 0 5 chr4 164693026 164693238 -37635109 + AluY SINE Alu 1 211 -100 1838 245 100 22 chr4 164693238 164693504 -37634843 - L2 LINE L2 -776 2537 2293 256 151 20 0 chr4 164693700 164693760 -37634587 + L1MA4A LINE L1 6107 6156 0 1505 174 3 21 chr4 164694293 164694581 -37633766 + AluJo SINE Alu 1 283 -29 228 67 0 0 chr4 164694584 164694614 -37633733 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 590 259 19 120 chr4 164695933 164696258 -37632089 - L2 LINE L2 -13 3300 3009 191 277 179 9 chr4 164696743 164696855 -37631492 + L3 LINE CR1 618 748 -829 345 299 62 21 chr4 164697750 164697894 -37630453 + MIR SINE MIR 81 230 -32 203 304 14 14 chr4 164697937 164698006 -37630341 + GA-rich Low_complexity Low_complexity 1 69 0 28 0 0 0 chr4 164698611 164698639 -37629708 + AT_rich Low_complexity Low_complexity 1 28 0 603 283 39 29 chr4 164699908 164700113 -37628234 + MIR SINE MIR 45 251 -11 1261 153 9 4 chr4 164700502 164700730 -37627617 + L1MA9 LINE L1 6084 6312 0 209 314 70 60 chr4 164701075 164701260 -37627087 - L2 LINE L2 -214 3058 2872 328 296 178 6 chr4 164703112 164703281 -37625066 - MIR SINE MIR 0 262 65 580 170 62 0 chr4 164703671 164703783 -37624564 + FLAM_C SINE Alu 1 119 -14 228 171 0 0 chr4 164704187 164704228 -37624119 + MER58 DNA MER1_type 59 99 -2321 570 160 30 0 chr4 164704240 164704340 -37624007 + MER58 DNA MER1_type 2318 2420 0 22 0 0 0 chr4 164709928 164709950 -37618397 + AT_rich Low_complexity Low_complexity 1 22 0 549 0 0 0 chr4 164710994 164711055 -37617292 + (TTCCC)n Simple_repeat Simple_repeat 1 61 0 1769 169 23 13 chr4 164711062 164711370 -37616977 - AluSx SINE Alu -1 311 1 2221 117 0 0 chr4 164711782 164712072 -37616275 - AluSg SINE Alu -20 290 1 224 303 34 22 chr4 164712332 164712421 -37615926 - MIR SINE MIR -78 184 95 343 311 104 38 chr4 164712618 164712830 -37615517 - MIR SINE MIR -7 255 30 407 314 166 18 chr4 164713063 164713286 -37615061 + MIR SINE MIR 2 257 -5 1502 230 60 40 chr4 164714961 164715414 -37612933 - MLT1C LTR MaLR 0 467 6 1531 153 121 65 chr4 164715735 164716074 -37612273 + MLT2B1 LTR ERVL 2 359 -161 * 2834 143 56 28 chr4 164716067 164716599 -37611748 + Tigger3(Golem) DNA MER2_type 2483 3029 0 2514 95 31 17 chr4 164716822 164717181 -37611166 + THE1B LTR MaLR 1 364 0 26 0 0 0 chr4 164717195 164717221 -37611126 + AT_rich Low_complexity Low_complexity 1 26 0 822 182 73 5 chr4 164717519 164717711 -37610636 - L1MC3 LINE L1 0 7785 7581 2224 94 0 0 chr4 164717713 164717999 -37610348 - AluSc SINE Alu -12 297 12 180 0 0 0 chr4 164718541 164718561 -37609786 + (CA)n Simple_repeat Simple_repeat 2 21 0 1950 109 63 0 chr4 164719656 164719940 -37608407 - AluSx SINE Alu -10 302 1 1716 154 13 27 chr4 164720030 164720328 -37608019 + AluJb SINE Alu 6 299 -13 921 160 7 0 chr4 164720354 164720504 -37607843 + FRAM SINE Alu 20 170 -6 209 151 19 0 chr4 164722204 164722257 -37606090 + (TA)n Simple_repeat Simple_repeat 1 54 0 438 256 134 12 chr4 164723011 164723175 -37605172 + L2 LINE L2 3117 3300 -13 279 0 0 0 chr4 164723175 164723206 -37605141 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 22 35 0 0 chr4 164723347 164723376 -37604971 + AT_rich Low_complexity Low_complexity 1 29 0 1022 167 12 0 chr4 164723394 164723556 -37604791 - FRAM SINE Alu -10 166 3 2093 244 74 4 chr4 164725817 164726123 -37602224 + L1M3c LINE L1 725 1008 -5133 216 0 0 0 chr4 164726123 164726147 -37602200 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2093 244 74 4 chr4 164726147 164726486 -37601861 + L1M3c LINE L1 1008 1464 -4677 333 140 14 23 chr4 164726486 164726574 -37601773 - Alu SINE Alu -1 299 247 276 320 152 0 chr4 164727045 164727170 -37601177 + MIR3 SINE MIR 65 208 0 506 283 98 6 chr4 164727692 164727865 -37600482 - MIR SINE MIR -1 261 73 24 32 0 0 chr4 164728673 164728704 -37599643 + AT_rich Low_complexity Low_complexity 1 31 0 491 269 127 24 chr4 164729433 164729645 -37598702 - MIR SINE MIR -8 254 21 181 326 11 42 chr4 164730137 164730232 -37598115 + L3 LINE CR1 798 889 -688 845 260 65 5 chr4 164730461 164730661 -37597686 - MER58A DNA MER1_type -12 212 1 22 0 0 0 chr4 164730692 164730714 -37597633 + AT_rich Low_complexity Low_complexity 1 22 0 851 158 0 0 chr4 164730828 164730955 -37597392 - FLAM_C SINE Alu -16 127 1 233 353 37 29 chr4 164731326 164731462 -37596885 + L2 LINE L2 1902 2038 -1276 23 0 0 0 chr4 164731854 164731877 -37596470 + AT_rich Low_complexity Low_complexity 1 23 0 2194 108 3 3 chr4 164732140 164732435 -37595912 - AluSx SINE Alu -13 299 5 5902 88 2 8 chr4 164732587 164733425 -37594922 + L1PA13 LINE L1 5328 6160 -3 234 278 68 62 chr4 164733930 164734092 -37594255 + L2 LINE L2 1696 1858 -1456 422 280 59 0 chr4 164734293 164734411 -37593936 - L2 LINE L2 -8 3264 3140 187 51 0 51 chr4 164736403 164736442 -37591905 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 236 89 0 44 chr4 164736885 164736930 -37591417 + (CATA)n Simple_repeat Simple_repeat 4 46 0 198 91 0 0 chr4 164736959 164736992 -37591355 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 2340 43 0 18 chr4 164736993 164737274 -37591073 - AluY SINE Alu -35 276 1 774 306 16 8 chr4 164737412 164737664 -37590683 + MIR SINE MIR 7 260 -2 237 312 110 32 chr4 164737668 164737822 -37590525 + MIR SINE MIR 68 233 -29 2080 107 3 20 chr4 164738724 164739022 -37589325 - AluSx SINE Alu -19 293 1 219 69 0 0 chr4 164739582 164739611 -37588736 + (A)n Simple_repeat Simple_repeat 1 29 0 806 282 15 0 chr4 164739742 164739948 -37588399 + MER58B DNA MER1_type 133 341 0 378 211 70 128 chr4 164739970 164740126 -37588221 - MIR SINE MIR -57 205 59 228 67 0 0 chr4 164740655 164740685 -37587662 + (A)n Simple_repeat Simple_repeat 1 30 0 825 284 14 0 chr4 164740813 164741021 -37587326 + MER58B DNA MER1_type 131 341 0 454 249 52 104 chr4 164741043 164741236 -37587111 - MIR SINE MIR -57 205 23 262 288 0 12 chr4 164742196 164742276 -37586071 - MIR3 SINE MIR 0 208 130 270 0 0 0 chr4 164743559 164743589 -37584758 + (CA)n Simple_repeat Simple_repeat 2 31 0 2076 94 18 7 chr4 164743593 164743892 -37584455 - AluSg SINE Alu 0 304 3 320 275 28 0 chr4 164745012 164745121 -37583226 + L1MCc LINE L1 23 134 -6289 * 3139 222 111 44 chr4 164745119 164745306 -37583041 + L1MC/D LINE L1 4004 4177 -2167 456 67 0 0 chr4 164745306 164745366 -37582981 + (TG)n Simple_repeat Simple_repeat 2 61 0 2371 145 45 24 chr4 164745369 164745790 -37582557 + Tigger2a DNA MER2_type 1 430 -4 3139 222 111 44 chr4 164745790 164745804 -37582543 + L1MC/D LINE L1 4178 4190 -2154 219 69 0 0 chr4 164745804 164745833 -37582514 + (CA)n Simple_repeat Simple_repeat 1 29 0 3139 222 111 44 chr4 164745833 164746563 -37581784 + L1MC/D LINE L1 4190 4869 -1475 2246 199 14 2 chr4 164746563 164746990 -37581357 + MSTB1 LTR MaLR 1 432 0 3139 222 111 44 chr4 164746990 164747535 -37580812 + L1MC/D LINE L1 4869 5606 -738 551 298 132 21 chr4 164747619 164747854 -37580493 + MIR SINE MIR 1 261 -1 2077 218 103 17 chr4 164747926 164748432 -37579915 + Charlie1 DNA MER1_type 1 567 -2194 2149 115 0 3 chr4 164748432 164748720 -37579627 - AluSx SINE Alu -25 287 1 2077 218 103 17 chr4 164748720 164748806 -37579541 + Charlie1 DNA MER1_type 567 644 -2117 895 157 29 67 chr4 164748809 164749019 -37579328 + Charlie1 DNA MER1_type 1972 2173 -588 229 406 21 30 chr4 164749254 164749488 -37578859 - L2 LINE L2 -123 3149 2918 21 0 0 0 chr4 164749967 164749988 -37578359 + AT_rich Low_complexity Low_complexity 1 21 0 3405 176 11 2 chr4 164751170 164751790 -37576557 + Tigger3b DNA MER2_type 3 628 -603 2393 85 0 3 chr4 164751908 164752215 -37576132 - AluSg1 SINE Alu -3 306 1 274 349 41 78 chr4 164752227 164752522 -37575825 - L2 LINE L2 -20 3252 2969 239 91 0 23 chr4 164752622 164752666 -37575681 + (CA)n Simple_repeat Simple_repeat 2 44 0 569 358 123 44 chr4 164753392 164754471 -37573876 + L3 LINE CR1 35 1199 -378 192 273 0 0 chr4 164754684 164754728 -37573619 - L2 LINE L2 -1906 1408 1365 27 0 0 0 chr4 164756785 164756812 -37571535 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr4 164758539 164758562 -37569785 + GC_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 164758639 164758676 -37569671 + GC_rich Low_complexity Low_complexity 1 37 0 515 276 160 0 chr4 164761514 164761670 -37566677 + MER5A DNA MER1_type 9 189 0 1876 200 27 64 chr4 164762473 164762761 -37565586 + MLT1D LTR MaLR 2 264 -241 2361 92 0 9 chr4 164762761 164763077 -37565270 + AluSq SINE Alu 1 313 0 1876 200 27 64 chr4 164763077 164763307 -37565040 + MLT1D LTR MaLR 264 501 -4 289 173 49 49 chr4 164763307 164763388 -37564959 + MLT1D-int LTR MaLR 48 128 -1243 * 1172 56 0 0 chr4 164763384 164763561 -37564786 + L1PA5 LINE L1 5989 6165 0 1920 197 52 40 chr4 164763562 164763804 -37564543 + MLT1D-int LTR MaLR 119 356 -1015 2297 126 22 6 chr4 164763804 164764160 -37564187 + THE1B LTR MaLR 1 362 -2 1920 197 52 40 chr4 164764160 164764394 -37563953 + MLT1D-int LTR MaLR 356 601 -770 927 308 8 8 chr4 164765236 164765496 -37562851 - MIR SINE MIR 0 262 3 308 284 106 9 chr4 164765506 164765627 -37562720 + MER5A DNA MER1_type 47 176 -2 230 133 0 22 chr4 164765885 164765930 -37562417 + (GGGA)n Simple_repeat Simple_repeat 2 45 0 959 301 100 34 chr4 164767605 164768317 -37560030 + L1MEd LINE L1 445 1203 -4916 231 214 58 70 chr4 164768422 164768610 -37559737 + L1MEd LINE L1 1345 1581 -909 336 282 51 64 chr4 164769147 164769303 -37559044 - L1M LINE L1 -701 5420 5267 189 0 0 0 chr4 164769645 164769666 -37558681 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 369 283 178 32 chr4 164769672 164769891 -37558456 - L2 LINE L2 -20 3293 3043 2121 100 0 0 chr4 164770853 164771174 -37557173 - AluY SINE Alu 0 321 1 269 232 137 0 chr4 164771395 164771482 -37556865 - MIR SINE MIR -66 142 58 2072 241 68 26 chr4 164771867 164772436 -37555911 - MLT1E LTR MaLR 0 593 1 398 304 47 18 chr4 164772493 164772664 -37555683 + MLT1J LTR MaLR 336 511 0 922 209 31 0 chr4 164773334 164773530 -37554817 + MER3 DNA MER1_type 1 202 -7 23 0 0 0 chr4 164773788 164773811 -37554536 + AT_rich Low_complexity Low_complexity 1 23 0 2167 107 10 0 chr4 164773904 164774194 -37554153 + AluSg SINE Alu 3 295 -15 254 262 76 58 chr4 164774211 164774383 -37553964 - L1ME4a LINE L1 -11 6110 5936 233 159 0 0 chr4 164774356 164774400 -37553947 + L1MC4 LINE L1 6659 6702 -1340 * 677 255 180 0 chr4 164774593 164774793 -37553554 + MIR SINE MIR 27 262 0 329 226 7 66 chr4 164776115 164776252 -37552095 + L1MC5 LINE L1 7080 7208 -753 228 229 0 0 chr4 164776411 164776459 -37551888 + CT-rich Low_complexity Low_complexity 4 51 0 2255 100 30 0 chr4 164776575 164776876 -37551471 + AluSx SINE Alu 1 310 -2 274 266 21 32 chr4 164776887 164776981 -37551366 + MIR SINE MIR 36 128 -134 286 262 152 18 chr4 164778285 164778449 -37549898 - L2 LINE L2 -338 2976 2791 661 143 0 18 chr4 164778691 164778790 -37549557 + AluSg/x SINE Alu 200 298 -12 4943 84 17 17 chr4 164778790 164779154 -37549193 + L1PB1 LINE L1 5428 5794 -357 447 19 0 0 chr4 164779154 164779206 -37549141 + (CA)n Simple_repeat Simple_repeat 2 53 0 4943 84 17 17 chr4 164779206 164779564 -37548783 + L1PB1 LINE L1 5793 6150 -1 661 143 0 18 chr4 164779564 164779576 -37548771 + AluSg/x SINE Alu 298 309 -1 21 0 0 0 chr4 164780018 164780039 -37548308 + AT_rich Low_complexity Low_complexity 1 21 0 242 362 47 0 chr4 164780096 164780223 -37548124 + MIR SINE MIR 32 164 -98 1847 124 10 50 chr4 164781777 164782076 -37546271 + AluSx SINE Alu 7 293 -19 270 296 74 74 chr4 164782611 164782787 -37545560 + MER5A DNA MER1_type 12 187 -2 * 307 249 90 52 chr4 164782641 164782788 -37545559 - MER5B DNA MER1_type -24 154 16 400 226 45 54 chr4 164783461 164783682 -37544665 + L1ME4a LINE L1 5880 6098 -23 654 268 103 15 chr4 164784394 164784655 -37543692 + L1MEc LINE L1 46 329 -6067 1690 186 0 7 chr4 164786034 164786324 -37542023 - AluJo SINE Alu -22 290 3 1250 296 62 12 chr4 164786324 164786603 -37541744 + LTR33 LTR ERVL 14 329 -192 189 0 0 0 chr4 164786603 164786624 -37541723 + (TCTCTG)n Simple_repeat Simple_repeat 6 26 0 1250 296 62 12 chr4 164786624 164786828 -37541519 + LTR33 LTR ERVL 329 521 0 982 265 68 67 chr4 164788523 164789128 -37539219 + L2 LINE L2 2705 3303 -10 778 215 67 67 chr4 164789296 164789519 -37538828 + MER58A DNA MER1_type 2 224 0 1293 210 177 6 chr4 164789619 164789952 -37538395 + MSTD LTR MaLR 5 394 -2 238 200 20 0 chr4 164790665 164790715 -37537632 + (TG)n Simple_repeat Simple_repeat 1 51 0 528 16 0 0 chr4 164790716 164790777 -37537570 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 289 253 24 12 chr4 164792399 164792482 -37535865 + L2 LINE L2 3184 3267 -5 1268 280 138 2 chr4 164792519 164792926 -37535421 - LTR16B LTR ERVL 0 464 3 1324 273 22 53 chr4 164794244 164794735 -37533612 - L2 LINE L2 -12 3301 2826 1222 213 87 40 chr4 164795948 164796295 -37532052 + MLT1A1 LTR MaLR 1 363 -2 2021 106 0 4 chr4 164796493 164796823 -37531524 - AluSx SINE Alu 0 342 14 335 276 79 20 chr4 164797667 164797819 -37530528 + L1ME LINE L1 5525 5685 -436 22 0 0 0 chr4 164797984 164798006 -37530341 + AT_rich Low_complexity Low_complexity 1 22 0 25 65 0 0 chr4 164798629 164798675 -37529672 + AT_rich Low_complexity Low_complexity 1 46 0 14314 143 26 2 chr4 164798903 164801266 -37527081 - Tigger1 DNA MER2_type 0 2418 1 218 247 318 0 chr4 164801278 164801363 -37526984 - L2 LINE L2 -18 3295 3184 684 126 19 0 chr4 164801933 164802036 -37526311 - AluSx SINE Alu -14 298 194 960 100 0 0 chr4 164802037 164802157 -37526190 - AluSx SINE Alu -171 141 22 338 329 195 27 chr4 164802175 164802807 -37525540 + L2 LINE L2 1917 2654 -660 823 247 122 85 chr4 164802900 164803228 -37525119 + MLT1E LTR MaLR 1 340 -253 184 272 76 43 chr4 164803329 164803421 -37524926 - L2 LINE L2 -54 3218 3124 25 31 0 0 chr4 164803664 164803696 -37524651 + AT_rich Low_complexity Low_complexity 1 32 0 201 345 0 44 chr4 164803716 164803829 -37524518 - MIR SINE MIR -71 191 84 219 313 0 0 chr4 164804130 164804194 -37524153 - L3b LINE CR1 -226 1357 1294 4610 97 9 2 chr4 164804449 164806066 -37522281 - L1PA8 LINE L1 -2 6170 4393 2629 145 5 5 chr4 164806061 164806488 -37521859 - L1P3 LINE L1 -5296 579 153 * 1000 119 17 51 chr4 164806506 164806612 -37521735 - L1P3 LINE L1 -5703 172 73 2053 125 10 0 chr4 164806612 164806907 -37521440 - AluSx SINE Alu -14 298 1 1000 119 17 51 chr4 164806907 164806976 -37521371 - L1P3 LINE L1 -5802 73 3 376 285 111 51 chr4 164807341 164807576 -37520771 + L2 LINE L2 3004 3252 -61 216 252 70 52 chr4 164807684 164807799 -37520548 + MIR SINE MIR 84 200 -62 21 0 0 0 chr4 164808110 164808131 -37520216 + AT_rich Low_complexity Low_complexity 1 21 0 224 149 0 21 chr4 164808545 164808592 -37519755 + (CTGGGG)n Simple_repeat Simple_repeat 2 47 0 605 274 71 5 chr4 164808713 164808910 -37519437 + MER63A DNA MER1_type 1 210 0 1450 180 93 6 chr4 164809648 164809959 -37518388 + MER7A DNA MER2_type 2 337 -9 321 148 119 79 chr4 164810009 164810110 -37518237 - MIR3 SINE MIR -97 111 7 28 29 0 0 chr4 164810778 164810813 -37517534 + AT_rich Low_complexity Low_complexity 1 35 0 490 326 42 9 chr4 164811587 164811802 -37516545 + L2 LINE L2 2479 2700 -614 1395 93 6 0 chr4 164811818 164812000 -37516347 + AluSg/x SINE Alu 122 304 -8 798 262 164 36 chr4 164812101 164812517 -37515830 + L2 LINE L2 2844 3312 -1 2340 87 13 0 chr4 164813721 164814021 -37514326 + AluSg SINE Alu 1 304 -6 2042 166 41 13 chr4 164814052 164814444 -37513903 - MER57A LTR ERV1 0 403 1 554 238 21 35 chr4 164814459 164814602 -37513745 - L1ME3A LINE L1 -43 6127 5987 39 74 0 0 chr4 164815449 164815530 -37512817 + AT_rich Low_complexity Low_complexity 1 81 0 2378 82 7 0 chr4 164815545 164815850 -37512497 + AluY SINE Alu 1 307 -4 236 248 35 106 chr4 164816096 164816209 -37512138 - L1ME3A LINE L1 -527 5594 5490 1521 112 12 0 chr4 164816495 164816736 -37511611 + L1MA1 LINE L1 6059 6302 0 2485 116 0 0 chr4 164816888 164817251 -37511096 - L1PB1 LINE L1 -7 6144 5782 242 224 0 0 chr4 164817251 164817309 -37511038 + (TA)n Simple_repeat Simple_repeat 1 58 0 8465 184 8 2 chr4 164817312 164819555 -37508792 - L1PB1 LINE L1 -361 5790 3535 3905 177 51 20 chr4 164819658 164820496 -37507851 - L1MC3 LINE L1 -1439 7141 6278 343 172 0 0 chr4 164820490 164820554 -37507793 - L1MC3 LINE L1 -898 6043 5980 * 859 196 49 12 chr4 164820579 164820824 -37507523 - L1MC3 LINE L1 0 7785 7532 3167 246 44 68 chr4 164820844 164820878 -37507469 - L1MC3 LINE L1 -2440 4501 4468 2067 113 14 3 chr4 164820878 164821162 -37507185 - AluSq SINE Alu -23 290 4 3167 246 44 68 chr4 164821162 164821903 -37506444 - L1MC3 LINE L1 -2473 4468 3711 2058 113 67 6 chr4 164821903 164822232 -37506115 - L1PB2 LINE L1 -8 6143 5795 3167 246 44 68 chr4 164822232 164823069 -37505278 - L1MC3 LINE L1 -3230 3711 2926 14465 137 24 13 chr4 164823073 164823392 -37504955 - Tigger1 DNA MER2_type -5 2413 2099 2236 111 10 0 chr4 164823392 164823698 -37504649 - AluSc SINE Alu 0 309 1 14465 137 24 13 chr4 164823698 164825765 -37502582 - Tigger1 DNA MER2_type -319 2099 1 3261 252 45 49 chr4 164825765 164826453 -37501894 - L1MC3 LINE L1 -4156 2966 2277 2162 134 0 6 chr4 164826453 164826767 -37501580 - AluSx SINE Alu 0 312 1 3261 252 45 49 chr4 164826767 164826924 -37501423 - L1MC3 LINE L1 -4845 2277 2121 2239 98 0 10 chr4 164826924 164827229 -37501118 - AluY SINE Alu -9 302 1 3261 252 45 49 chr4 164827229 164828216 -37500131 - L1MC3 LINE L1 -5001 2121 1132 195 42 0 0 chr4 164828216 164828240 -37500107 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3261 252 45 49 chr4 164828240 164828770 -37499577 - L1MC3 LINE L1 -5990 1132 3 2217 109 10 10 chr4 164828880 164829192 -37499155 - AluSx SINE Alu 0 312 1 788 207 14 0 chr4 164830029 164830174 -37498173 + FRAM SINE Alu 1 146 -30 2782 184 137 105 chr4 164830378 164830763 -37497584 + L1MC3 LINE L1 6706 7077 -708 262 271 29 0 chr4 164830763 164830833 -37497514 + MLT1F1 LTR MaLR 45 116 -451 2782 184 137 105 chr4 164830833 164831071 -37497276 + L1MC3 LINE L1 7077 7306 -479 2028 120 4 4 chr4 164831071 164831371 -37496976 + AluSc SINE Alu 3 302 0 2782 184 137 105 chr4 164831371 164831460 -37496887 + L1MC3 LINE L1 7306 7391 -394 1655 204 10 0 chr4 164831460 164831754 -37496593 + AluJo SINE Alu 1 297 -15 2782 184 137 105 chr4 164831754 164832008 -37496339 + L1MC3 LINE L1 7391 7777 -8 451 292 115 76 chr4 164832145 164832590 -37495757 - L2 LINE L2 -1 3312 2851 199 164 66 66 chr4 164832634 164832695 -37495652 + L3 LINE CR1 985 1045 -532 432 0 0 0 chr4 164833359 164833407 -37494940 + (TG)n Simple_repeat Simple_repeat 1 48 0 2545 42 0 22 chr4 164833407 164833712 -37494635 - AluY SINE Alu -11 300 1 1994 105 38 67 chr4 164834240 164834554 -37493793 + AluSq SINE Alu 1 305 -8 2188 108 27 0 chr4 164836427 164836722 -37491625 + AluSx SINE Alu 1 303 -9 770 87 0 0 chr4 164836747 164836850 -37491497 - L1PB4 LINE L1 -7 6149 6047 349 214 79 71 chr4 164837134 164837193 -37491154 + MER117 DNA MER1_type 1 58 -139 2213 90 10 0 chr4 164837193 164837493 -37490854 + AluY SINE Alu 1 303 -8 349 214 79 71 chr4 164837493 164837573 -37490774 + MER117 DNA MER1_type 58 141 -56 1663 161 81 4 chr4 164837788 164838061 -37490286 + AluJo SINE Alu 1 294 -18 296 319 27 70 chr4 164838998 164839183 -37489164 - MIR SINE MIR -50 212 36 1960 113 0 48 chr4 164839318 164839641 -37488706 - AluSc SINE Alu 0 309 1 480 327 73 53 chr4 164839722 164840254 -37488093 + L2 LINE L2 2147 2689 -625 693 206 0 0 chr4 164840306 164840476 -37487871 + AluJb SINE Alu 156 325 0 489 290 48 77 chr4 164840684 164840956 -37487391 + MLT1I LTR MaLR 44 307 -102 277 282 19 19 chr4 164841154 164841257 -37487090 + MLT1I LTR MaLR 306 408 -1 450 325 73 69 chr4 164841258 164841575 -37486772 + L2 LINE L2 2953 3270 -2 25 0 0 0 chr4 164842293 164842318 -37486029 + AT_rich Low_complexity Low_complexity 1 25 0 255 79 0 0 chr4 164842372 164842410 -37485937 + (CA)n Simple_repeat Simple_repeat 1 38 0 1147 259 60 51 chr4 164842488 164842974 -37485373 + MER74B LTR ERVL 56 545 -77 1979 168 7 0 chr4 164842974 164843284 -37485063 - AluJb SINE Alu 0 312 1 221 378 80 16 chr4 164843744 164843932 -37484415 - MIR3 SINE MIR -7 201 2 378 193 241 28 chr4 164843951 164844096 -37484251 - L1PA16 LINE L1 0 6166 5991 368 124 22 34 chr4 164844096 164844185 -37484162 + CT-rich Low_complexity Low_complexity 2 89 0 196 313 58 95 chr4 164844400 164844643 -37483704 - L2 LINE L2 -843 2471 2238 621 188 18 0 chr4 164845812 164845924 -37482423 - FLAM_A SINE Alu -19 114 1 276 309 11 53 chr4 164846574 164846668 -37481679 + L2 LINE L2 3183 3272 0 2377 66 0 0 chr4 164846856 164847145 -37481202 + AluY SINE Alu 1 289 -22 321 280 75 9 chr4 164847171 164847278 -37481069 - L1MC4 LINE L1 -1315 6727 6614 1942 53 0 0 chr4 164847952 164848196 -37480151 - L1PA5 LINE L1 0 6154 5911 2363 60 0 47 chr4 164848981 164849299 -37479048 - AluY SINE Alu -8 303 1 1471 179 69 31 chr4 164850026 164850316 -37478031 - AluJb SINE Alu -11 301 1 225 292 5 68 chr4 164852839 164853031 -37475316 + GA-rich Low_complexity Low_complexity 1 180 0 * 292 241 23 11 chr4 164852987 164853074 -37475273 + A-rich Low_complexity Low_complexity 2 89 0 962 196 85 84 chr4 164853158 164853507 -37474840 + MER4C LTR ERV1 198 465 0 27 92 0 0 chr4 164853746 164853822 -37474525 + AT_rich Low_complexity Low_complexity 1 76 0 260 194 42 83 chr4 164854356 164854428 -37473919 - MIR SINE MIR -62 146 78 25 31 0 0 chr4 164854545 164854577 -37473770 + AT_rich Low_complexity Low_complexity 1 32 0 1537 283 100 41 chr4 164855750 164856422 -37471925 - L2 LINE L2 -54 3259 2516 1360 159 46 35 chr4 164856422 164856705 -37471642 - AluJo SINE Alu -15 287 2 1537 283 100 41 chr4 164856705 164857011 -37471336 - L2 LINE L2 -797 2516 2229 268 260 10 145 chr4 164857172 164857246 -37471101 - L2 LINE L2 -2240 1074 992 2546 74 0 0 chr4 164857246 164857557 -37470790 + AluY SINE Alu 1 311 0 268 260 10 145 chr4 164857557 164857600 -37470747 - L2 LINE L2 -2322 992 992 1876 128 104 20 chr4 164857600 164857945 -37470402 + THE1C LTR MaLR 2 375 0 268 260 10 145 chr4 164857945 164858026 -37470321 - L2 LINE L2 -2322 992 902 1700 175 27 8 chr4 164858042 164858503 -37469844 - MLT2B1 LTR ERVL 0 515 1 425 344 132 0 chr4 164858503 164858730 -37469617 - L2 LINE L2 -2420 894 638 548 226 67 44 chr4 164858863 164859088 -37469259 - MLT1G LTR MaLR -238 326 88 588 34 34 67 chr4 164909432 164909610 -37418737 + (TA)n Simple_repeat Simple_repeat 2 173 0 529 63 32 60 chr4 164909628 164909886 -37418461 + (TA)n Simple_repeat Simple_repeat 1 250 0 293 164 0 0 chr4 164909887 164909942 -37418405 - L1M2 LINE L1 -511 5789 5735 2219 114 0 3 chr4 164910010 164910309 -37418038 + AluSg SINE Alu 1 298 -12 237 279 29 0 chr4 164910358 164910426 -37417921 + MER69 DNA AcHobo 4 73 -1153 529 176 7 49 chr4 164910563 164910705 -37417642 + MER69 DNA AcHobo 2382 2517 -9 189 152 64 8 chr4 164910966 164911091 -37417256 + (TA)n Simple_repeat Simple_repeat 1 132 0 283 131 33 52 chr4 164911104 164911257 -37417090 + (TTATA)n Simple_repeat Simple_repeat 5 154 0 222 128 73 9 chr4 164911273 164911382 -37416965 + (TA)n Simple_repeat Simple_repeat 1 116 0 1611 210 30 8 chr4 164911391 164911753 -37416594 + L1PB4 LINE L1 5783 6152 -4 199 140 40 0 chr4 164911995 164912045 -37416302 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 790 117 27 19 chr4 164912059 164912131 -37416216 + (TCTA)n Simple_repeat Simple_repeat 1 71 -550 2719 89 6 0 chr4 164912131 164912492 -37415855 - THE1B LTR MaLR 0 364 2 790 117 27 19 chr4 164912492 164912676 -37415671 + (TCTA)n Simple_repeat Simple_repeat 71 621 0 9304 98 49 17 chr4 164913679 164915756 -37412591 - L1PBa LINE L1 -3938 2925 636 1066 162 5 0 chr4 164915758 164915956 -37412391 - L1PBa LINE L1 -6663 200 2 22 35 0 0 chr4 164916022 164916051 -37412296 + AT_rich Low_complexity Low_complexity 1 29 0 26 93 0 0 chr4 164916168 164916243 -37412104 + AT_rich Low_complexity Low_complexity 1 75 0 615 271 67 93 chr4 164916269 164916716 -37411631 - L1MEc LINE L1 -4376 2020 1590 1972 120 4 0 chr4 164916716 164916983 -37411364 - AluSx SINE Alu -16 296 29 615 271 67 93 chr4 164916983 164917115 -37411232 - L1MEc LINE L1 -4806 1590 1456 974 230 89 62 chr4 164917359 164917549 -37410798 - L1MEc LINE L1 -4949 1447 1264 2349 97 0 3 chr4 164917549 164917859 -37410488 - AluSq SINE Alu 0 313 5 974 230 89 62 chr4 164917859 164918286 -37410061 - L1MEc LINE L1 -5132 1264 813 261 91 182 0 chr4 164918288 164918343 -37410004 + MER53 DNA DNA 2 66 -123 1392 209 37 34 chr4 164918352 164918707 -37409640 + MLT1A1 LTR MaLR 10 365 0 420 183 26 26 chr4 164918714 164918829 -37409518 + MER53 DNA DNA 71 185 -4 189 0 0 0 chr4 164918845 164918866 -37409481 + (T)n Simple_repeat Simple_repeat 1 21 0 1100 274 54 89 chr4 164918866 164918927 -37409420 - L1MEc LINE L1 -5594 802 740 2190 99 0 49 chr4 164918927 164919251 -37409096 + AluSg SINE Alu 1 308 -2 207 0 0 0 chr4 164919251 164919274 -37409073 + (TA)n Simple_repeat Simple_repeat 2 24 0 1100 274 54 89 chr4 164919274 164920008 -37408339 - L1MEc LINE L1 -5654 742 34 22 0 0 0 chr4 164920027 164920049 -37408298 + AT_rich Low_complexity Low_complexity 1 22 0 379 291 109 0 chr4 164920430 164920595 -37407752 - MIR SINE MIR -15 247 65 22 0 0 0 chr4 164920653 164920675 -37407672 + AT_rich Low_complexity Low_complexity 1 22 0 2446 78 0 0 chr4 164920676 164920972 -37407375 - AluY SINE Alu -15 296 1 283 197 30 0 chr4 164921537 164921603 -37406744 + MLT1G LTR MaLR 523 590 0 343 347 32 0 chr4 164921638 164921762 -37406585 - L2 LINE L2 -1 3312 3185 403 252 13 66 chr4 164922644 164922795 -37405552 - MER45C DNA AcHobo -101 852 710 * 979 223 3 63 chr4 164922777 164923137 -37405210 - MER45C DNA AcHobo -562 391 1 1517 213 5 69 chr4 164923680 164923992 -37404355 + MLT1A1 LTR MaLR 1 285 -80 2358 113 0 0 chr4 164923992 164924302 -37404045 - AluSg SINE Alu 0 310 1 1517 213 5 69 chr4 164924302 164924379 -37403968 + MLT1A1 LTR MaLR 285 365 0 31 0 0 0 chr4 164924823 164924854 -37403493 + AT_rich Low_complexity Low_complexity 1 31 0 2140 101 0 4 chr4 164924855 164925133 -37403214 - AluSx SINE Alu -24 288 12 475 71 12 60 chr4 164925374 164925458 -37402889 + MADE1 DNA Mariner 1 80 0 2020 153 84 18 chr4 164925729 164926167 -37402180 - MLT1C LTR MaLR 0 467 1 2123 91 0 0 chr4 164926425 164926700 -37401647 - AluY SINE Alu -1 310 36 3461 123 9 6 chr4 164928078 164928690 -37399657 - MER4B LTR ERV1 0 779 1 208 313 116 9 chr4 164929533 164929645 -37398702 - L2 LINE L2 -5 3308 3185 1414 235 56 21 chr4 164929746 164930172 -37398175 - MLT1C LTR MaLR -26 441 1 233 291 187 8 chr4 164932229 164932363 -37395984 - MIR SINE MIR -31 231 74 388 272 41 12 chr4 164933572 164933741 -37394606 - L1M4 LINE L1 -1479 4667 4494 2327 94 0 3 chr4 164933755 164934064 -37394283 - AluY SINE Alu -2 309 2 569 286 82 9 chr4 164934142 164934362 -37393985 - L1ME3A LINE L1 -32 6138 5903 224 304 58 0 chr4 164935947 164936016 -37392331 + MIR3 SINE MIR 88 160 -48 181 167 56 56 chr4 164936167 164936221 -37392126 + MIR3 SINE MIR 154 207 -1 2208 108 0 0 chr4 164937256 164937542 -37390805 + AluSx SINE Alu 1 286 -26 2190 109 0 0 chr4 164938000 164938328 -37390019 + AluSx SINE Alu 1 328 0 568 341 30 19 chr4 164939723 164939990 -37388357 + L3 LINE CR1 1289 1558 -19 423 348 26 38 chr4 164940420 164940633 -37387714 - L2 LINE L2 -276 3037 2822 2184 195 36 2 chr4 164940633 164941079 -37387268 + LOR1b LTR ERV1 1 461 0 423 348 26 38 chr4 164941079 164941155 -37387192 - L2 LINE L2 -491 2822 2747 351 280 34 0 chr4 164942452 164942570 -37385777 - Tigger8 DNA MER2_type -353 313 192 530 276 182 70 chr4 164942584 164942957 -37385390 - MLT1J LTR MaLR -94 417 3 1996 135 24 21 chr4 164943486 164943826 -37384521 - L1M3 LINE L1 -434 5734 5394 2343 84 0 3 chr4 164943836 164944133 -37384214 - AluY SINE Alu -15 296 1 1898 222 138 1 chr4 164944147 164944686 -37383661 - L1M3 LINE L1 -709 5412 4801 * 2142 182 16 62 chr4 164944666 164945167 -37383180 + L1MB1 LINE L1 5690 6167 -1 1581 181 13 30 chr4 164945261 164945564 -37382783 + AluJo SINE Alu 1 298 -14 25 0 0 0 chr4 164946215 164946240 -37382107 + AT_rich Low_complexity Low_complexity 1 25 0 267 309 135 0 chr4 164946312 164946438 -37381909 + MIR SINE MIR 78 220 -42 24 0 0 0 chr4 164949296 164949320 -37379027 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 164953361 164953383 -37374964 + AT_rich Low_complexity Low_complexity 1 22 0 182 188 83 21 chr4 164954832 164954880 -37373467 + L2 LINE L2 99 149 -3165 3267 124 38 4 chr4 164958448 164958979 -37369368 + L1MC1 LINE L1 5785 6333 0 266 130 22 0 chr4 164958980 164959026 -37369321 - Charlie1 DNA MER1_type -49 2712 2666 1855 196 34 17 chr4 164959028 164959446 -37368901 - MER95 LTR ERV 0 431 7 2469 192 67 10 chr4 164959462 164960072 -37368275 - Charlie1 DNA MER1_type -107 2654 2010 33 43 0 0 chr4 164960718 164960765 -37367582 + AT_rich Low_complexity Low_complexity 1 47 0 2620 198 23 23 chr4 164961401 164962006 -37366341 - L1MD1 LINE L1 -1 6241 5637 2530 220 36 66 chr4 164962008 164962798 -37365549 - L1MDa LINE L1 -5620 920 18 785 262 100 35 chr4 164964955 164965325 -37363022 + MLT1J1 LTR MaLR 27 420 -26 487 178 68 41 chr4 164965326 164965472 -37362875 - MER69 DNA AcHobo 0 2526 2377 354 271 24 0 chr4 164965596 164965681 -37362666 - MER69 DNA AcHobo -2439 87 1 3226 156 44 17 chr4 164966068 164966704 -37361643 + MER39B LTR ERV1 1 653 0 210 143 0 0 chr4 164967924 164967959 -37360388 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 396 190 43 0 chr4 164968641 164968757 -37359590 + CT-rich Low_complexity Low_complexity 4 124 0 1359 174 0 5 chr4 164968759 164968983 -37359364 - AluJb SINE Alu -5 307 85 29 47 0 0 chr4 164969094 164969137 -37359210 + AT_rich Low_complexity Low_complexity 1 43 0 2102 127 3 0 chr4 164969171 164969463 -37358884 + AluSx SINE Alu 4 296 -16 4573 103 155 0 chr4 164969590 164970305 -37358042 - LTR12 LTR ERV1 0 826 1 249 57 0 0 chr4 164970641 164970676 -37357671 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 685 289 106 36 chr4 164971039 164971507 -37356840 - L2 LINE L2 -1 3312 2764 2210 109 0 0 chr4 164971746 164972040 -37356307 + AluSg SINE Alu 3 296 -14 21 0 0 0 chr4 164972053 164972074 -37356273 + AT_rich Low_complexity Low_complexity 1 21 0 31 58 0 0 chr4 164972858 164972910 -37355437 + AT_rich Low_complexity Low_complexity 1 52 0 2014 117 48 0 chr4 164973288 164973579 -37354768 + AluSx SINE Alu 1 305 -7 949 189 11 5 chr4 164973639 164973829 -37354518 - AluJo SINE Alu -3 309 119 253 167 0 0 chr4 164973847 164973895 -37354452 - FLAM_A SINE Alu 0 133 86 729 268 28 53 chr4 164974584 164975071 -37353276 - L2 LINE L2 -115 3198 2508 1017 242 56 0 chr4 164975675 164975906 -37352441 + MIR SINE MIR 19 262 0 369 331 31 19 chr4 164976381 164976541 -37351806 + L2 LINE L2 2251 2412 -902 1373 143 23 0 chr4 164977003 164977219 -37351128 + AluJo SINE Alu 88 308 -4 183 42 0 0 chr4 164977282 164977306 -37351041 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr4 164977892 164977922 -37350425 + AT_rich Low_complexity Low_complexity 1 30 0 291 113 0 0 chr4 164977952 164978005 -37350342 + (TG)n Simple_repeat Simple_repeat 1 53 0 239 283 225 22 chr4 164980845 164980983 -37347364 - MIR SINE MIR -13 249 84 25 0 0 0 chr4 164981150 164981175 -37347172 + AT_rich Low_complexity Low_complexity 1 25 0 443 332 12 44 chr4 164982197 164982447 -37345900 + L3 LINE CR1 1147 1388 -189 2217 94 10 10 chr4 164982622 164982930 -37345417 + AluY SINE Alu 1 308 -3 510 13 26 26 chr4 164984033 164984109 -37344238 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 24 0 0 0 chr4 164984693 164984717 -37343630 + AT_rich Low_complexity Low_complexity 1 24 0 3396 107 60 96 chr4 164984903 164985588 -37342759 + MER4A LTR ERV1 1 660 -4 22 56 0 0 chr4 164986314 164986350 -37341997 + AT_rich Low_complexity Low_complexity 1 36 0 2337 57 3 0 chr4 164986922 164987229 -37341118 + AluY SINE Alu 1 308 0 2256 160 61 20 chr4 164987799 164988243 -37340104 - MLT1C LTR MaLR -4 463 2 21 0 0 0 chr4 164988692 164988713 -37339634 + AT_rich Low_complexity Low_complexity 1 21 0 398 290 34 34 chr4 164988781 164989043 -37339304 + L1MC4a LINE L1 5672 5933 -1875 1527 249 88 27 chr4 164989175 164989733 -37338614 - L1MC4 LINE L1 -211 7831 7240 800 257 130 24 chr4 164989796 164990421 -37337926 - L1ME LINE L1 -3501 2579 1941 2355 85 7 3 chr4 164990451 164990757 -37337590 + AluY SINE Alu 1 307 -4 187 120 20 40 chr4 164990820 164990870 -37337477 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 946 206 0 0 chr4 164990971 164991193 -37337154 + AluJb SINE Alu 136 357 0 258 247 0 26 chr4 164991223 164991300 -37337047 - L1ME LINE L1 -4613 1648 1574 379 225 28 0 chr4 164991303 164991374 -37336973 - AluJ/FRAM SINE Alu -11 291 219 811 244 23 33 chr4 164991407 164991774 -37336573 - L1ME LINE L1 -5069 1001 676 302 345 18 0 chr4 164992120 164992230 -37336117 + L1MC/D LINE L1 5511 5622 -2186 1548 16 66 0 chr4 164992795 164992977 -37335370 - AluY SINE Alu -117 194 1 1140 223 29 20 chr4 164993560 164993886 -37334461 + MLT1A1 LTR MaLR 1 364 -1 588 264 184 42 chr4 164994653 164995006 -37333341 + L2 LINE L2 365 767 -2547 737 148 49 0 chr4 164995007 164995129 -37333218 + AluSg/x SINE Alu 176 303 -9 1891 287 177 16 chr4 164995129 164995710 -37332637 + L2 LINE L2 756 1242 -2072 2172 107 10 3 chr4 164995710 164996018 -37332329 + AluSg SINE Alu 1 310 0 1891 287 177 16 chr4 164996018 164996364 -37331983 + L2 LINE L2 1242 1832 -1482 25 0 0 0 chr4 164996365 164996390 -37331957 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr4 164996621 164996645 -37331702 + AT_rich Low_complexity Low_complexity 1 24 0 287 334 183 24 chr4 164997716 164998099 -37330248 - L2 LINE L2 -825 2489 2046 1868 188 2 63 chr4 164998491 164998906 -37329441 - MLT1B LTR MaLR 0 390 1 829 286 151 15 chr4 164999006 164999398 -37328949 + LTR33 LTR ERVL 77 521 0 5285 277 70 38 chr4 164999398 165000074 -37328273 + L2 LINE L2 877 1530 -1783 2427 134 83 0 chr4 165000074 165000469 -37327878 + MSTA LTR MaLR 1 428 0 5285 277 70 38 chr4 165000469 165001986 -37326361 + L2 LINE L2 1530 3134 -179 243 182 91 0 chr4 165003033 165003088 -37325259 - MIR SINE MIR -161 101 42 578 321 169 29 chr4 165003222 165003824 -37324523 + L2 LINE L2 2230 2747 -566 998 202 63 123 chr4 165003824 165004239 -37324108 - MLT1B LTR MaLR 0 390 1 578 321 169 29 chr4 165004239 165004284 -37324063 + L2 LINE L2 2747 2784 -529 2486 51 0 3 chr4 165004284 165004579 -37323768 - AluY SINE Alu -17 294 1 578 321 169 29 chr4 165004579 165004862 -37323485 + L2 LINE L2 2784 3308 -5 312 329 27 64 chr4 165004878 165005097 -37323250 + MIR SINE MIR 49 259 -3 2272 82 0 41 chr4 165006343 165006662 -37321685 - AluSc SINE Alu -3 306 1 1077 212 134 52 chr4 165006802 165007265 -37321082 + MLT1D LTR MaLR 5 505 0 1071 227 55 81 chr4 165007584 165008160 -37320187 + MER39 LTR ERV1 1 585 0 272 233 243 19 chr4 165008160 165008263 -37320084 - MIR SINE MIR -33 229 104 2314 88 0 13 chr4 165008279 165008585 -37319762 + AluSp SINE Alu 4 305 -8 21 0 0 0 chr4 165008890 165008911 -37319436 + AT_rich Low_complexity Low_complexity 1 21 0 346 275 243 11 chr4 165009846 165010035 -37318312 + MIR SINE MIR 4 236 -26 245 342 147 13 chr4 165010658 165010883 -37317464 + MIR SINE MIR 8 262 0 830 336 171 30 chr4 165012073 165013256 -37315091 + L2 LINE L2 1233 2581 -733 548 64 0 13 chr4 165013317 165013395 -37314952 + (GGAA)n Simple_repeat Simple_repeat 4 80 0 285 310 168 7 chr4 165013427 165013582 -37314765 + L2 LINE L2 2578 2757 -557 301 224 0 102 chr4 165013682 165013780 -37314567 - MLT1J1 LTR MaLR -155 291 204 * 358 288 56 0 chr4 165013772 165013897 -37314450 - MLT1J2 LTR MaLR -291 159 28 4190 133 5 0 chr4 165014825 165015484 -37312863 - L1P LINE L1 -969 5177 4516 737 91 0 10 chr4 165015484 165015576 -37312771 + L1PA8A LINE L1 6022 6119 -12 27 29 0 0 chr4 165015576 165015610 -37312737 + AT_rich Low_complexity Low_complexity 1 34 0 249 342 0 0 chr4 165015791 165015873 -37312474 + MIR SINE MIR 40 121 -87 180 125 0 0 chr4 165016150 165016182 -37312165 + (CA)n Simple_repeat Simple_repeat 1 32 0 690 219 22 22 chr4 165016229 165016407 -37311940 - MER97a DNA MER1_type? -716 178 1 1879 159 0 10 chr4 165016585 165016899 -37311448 - AluY SINE Alu 0 311 1 23 0 0 0 chr4 165016945 165016968 -37311379 + AT_rich Low_complexity Low_complexity 1 23 0 2167 121 0 6 chr4 165017147 165017460 -37310887 - AluY SINE Alu 0 311 1 443 268 16 8 chr4 165018932 165019059 -37309288 + MER94 DNA DNA 3 130 -4 221 312 0 52 chr4 165020116 165020193 -37308154 + MIR SINE MIR 178 250 -12 2115 130 0 0 chr4 165020213 165020512 -37307835 + AluSx SINE Alu 1 299 -13 293 268 63 71 chr4 165022149 165022276 -37306071 + L2 LINE L2 3187 3312 -1 1988 132 0 14 chr4 165022459 165022754 -37305593 + AluJb SINE Alu 1 291 -21 1995 109 0 11 chr4 165024009 165024283 -37304064 + AluSg SINE Alu 28 298 -12 296 356 57 17 chr4 165024660 165024837 -37303510 + MIR3 SINE MIR 18 201 -7 597 165 0 55 chr4 165025177 165025304 -37303043 + L1MC/D LINE L1 5659 5778 -555 456 272 48 0 chr4 165029290 165029415 -37298932 - MIR SINE MIR -84 178 48 1964 144 43 25 chr4 165029940 165030308 -37298039 + THE1C LTR MaLR 1 375 0 2212 119 0 0 chr4 165031073 165031383 -37296964 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr4 165031630 165031659 -37296688 + AT_rich Low_complexity Low_complexity 1 29 0 589 275 135 18 chr4 165031854 165032083 -37296264 - MIR SINE MIR 0 262 7 30 0 0 0 chr4 165033383 165033413 -37294934 + AT_rich Low_complexity Low_complexity 1 30 0 33 25 0 0 chr4 165033502 165033542 -37294805 + AT_rich Low_complexity Low_complexity 1 40 0 236 30 30 0 chr4 165033579 165033612 -37294735 + (CA)n Simple_repeat Simple_repeat 1 34 0 468 303 119 32 chr4 165033928 165034585 -37293762 + HAL1 LINE L1 1041 1754 -753 1446 277 66 34 chr4 165034958 165035456 -37292891 + MLT1G LTR MaLR 77 590 0 359 287 133 14 chr4 165035456 165035599 -37292748 + MIR SINE MIR 94 253 -9 227 200 20 0 chr4 165035853 165035903 -37292444 + GA-rich Low_complexity Low_complexity 2 52 0 21 0 0 0 chr4 165035919 165035940 -37292407 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr4 165036041 165036075 -37292272 + AT_rich Low_complexity Low_complexity 1 34 0 2780 146 35 29 chr4 165036139 165036624 -37291723 - LTR22B LTR ERVK -4 488 1 21 0 0 0 chr4 165037954 165037975 -37290372 + AT_rich Low_complexity Low_complexity 1 21 0 489 266 24 0 chr4 165038392 165038516 -37289831 - LTR16A1 LTR ERVL 0 457 331 4941 61 3 16 chr4 165038532 165039151 -37289196 + SVA Other Other 775 1385 -1 440 206 11 0 chr4 165039180 165039272 -37289075 + MER81 DNA DNA 20 112 -2 325 258 155 63 chr4 165039851 165040156 -37288191 + L1ME LINE L1 5306 5584 -582 4371 142 16 16 chr4 165040243 165040808 -37287539 + MER50 LTR ERV1 1 568 -166 2212 58 3 17 chr4 165040808 165041103 -37287244 - AluY SINE Alu -20 291 1 4371 142 16 16 chr4 165041103 165041248 -37287099 + MER50 LTR ERV1 567 711 -23 5260 97 27 3 chr4 165041544 165042249 -37286098 - LTR30 LTR ERV1 0 722 1 396 254 109 5 chr4 165042599 165042792 -37285555 - Charlie2 DNA MER1_type 0 2862 2650 1166 239 38 12 chr4 165042792 165043131 -37285216 - Charlie2b DNA MER1_type -1322 1460 1113 472 283 38 19 chr4 165043132 165043291 -37285056 - MLT1H LTR MaLR -375 174 13 391 17 51 17 chr4 165043490 165043549 -37284798 + (TAAAA)n Simple_repeat Simple_repeat 2 62 0 2218 101 0 7 chr4 165044329 165044626 -37283721 + AluY SINE Alu 2 296 -15 6216 145 32 3 chr4 165045035 165046281 -37282066 + L1MA4A LINE L1 5015 6292 -11 3479 312 86 46 chr4 165046324 165048518 -37279829 + HERVL LTR ERVL 978 3259 -2505 13708 139 22 66 chr4 165049139 165051655 -37276692 + Tigger1 DNA MER2_type 1 2404 -14 959 330 17 6 chr4 165051716 165052098 -37276249 + HERVL LTR ERVL 4056 4389 -1265 747 277 104 16 chr4 165052366 165052615 -37275732 + HERVL LTR ERVL 4851 5121 -643 569 260 73 50 chr4 165052705 165052924 -37275423 - MIR SINE MIR -10 252 29 23 86 0 0 chr4 165053029 165053087 -37275260 + AT_rich Low_complexity Low_complexity 1 58 0 368 40 20 0 chr4 165053952 165054002 -37274345 + (CA)n Simple_repeat Simple_repeat 1 51 0 286 250 24 12 chr4 165054627 165054711 -37273636 + MER112 DNA MER1_type 1 85 -175 1442 58 0 0 chr4 165055293 165055465 -37272882 + AluY SINE Alu 132 303 -8 1975 109 0 0 chr4 165056128 165056385 -37271962 + AluSx SINE Alu 52 308 -4 1002 313 116 41 chr4 165056852 165057613 -37270734 + L3 LINE CR1 646 1463 -114 23 33 0 0 chr4 165058642 165058672 -37269675 + AT_rich Low_complexity Low_complexity 1 30 0 278 288 42 8 chr4 165058956 165059074 -37269273 + L1ME LINE L1 5541 5662 -459 21 36 0 0 chr4 165059120 165059148 -37269199 + AT_rich Low_complexity Low_complexity 1 28 0 193 273 36 0 chr4 165060485 165060540 -37267807 - L3b LINE CR1 -321 1262 1206 467 243 90 53 chr4 165060540 165060729 -37267618 + MER63A DNA MER1_type 10 205 -5 1192 194 67 26 chr4 165061624 165061963 -37266384 - MLT1D LTR MaLR -76 429 22 1533 194 42 10 chr4 165062096 165062385 -37265962 - AluJo SINE Alu -14 298 1 503 348 36 24 chr4 165062427 165062680 -37265667 - L2 LINE L2 -7 3306 3051 218 235 118 24 chr4 165062663 165062748 -37265599 + MIR SINE MIR 44 136 -72 * 215 277 62 0 chr4 165062718 165062783 -37265564 + MIR SINE MIR 82 150 -112 * 657 320 86 33 chr4 165063189 165063645 -37264702 - L2 LINE L2 -30 3283 2804 494 172 32 0 chr4 165063692 165063785 -37264562 + MER5A DNA MER1_type 14 109 -80 2055 130 3 0 chr4 165063891 165064217 -37264130 - AluSp SINE Alu 0 327 1 244 340 58 16 chr4 165064227 165064415 -37263932 - L2 LINE L2 -608 2706 2511 350 274 24 0 chr4 165064751 165064835 -37263512 - L2 LINE L2 -1 3271 3186 228 302 82 39 chr4 165064858 165065040 -37263307 + L2 LINE L2 2660 2849 -465 185 250 43 114 chr4 165065253 165065393 -37262954 + L2 LINE L2 2929 3058 -214 283 233 14 14 chr4 165065493 165065566 -37262781 + MIR SINE MIR 81 153 -109 554 105 0 23 chr4 165065576 165065662 -37262685 + FLAM_C SINE Alu 60 143 0 425 118 0 13 chr4 165066389 165066448 -37261899 + L1M4 LINE L1 5128 5186 -960 9657 62 7 19 chr4 165066448 165067264 -37261083 + L1PA6 LINE L1 4186 5010 -1144 2443 97 0 0 chr4 165067264 165067572 -37260775 + AluY SINE Alu 1 308 -3 9657 62 7 19 chr4 165067572 165068354 -37259993 + L1PA6 LINE L1 5010 5762 -392 2480 78 0 0 chr4 165068354 165068662 -37259685 + AluY SINE Alu 1 308 -3 9657 62 7 19 chr4 165068662 165069051 -37259296 + L1PA6 LINE L1 5762 6154 0 425 118 0 13 chr4 165069051 165069067 -37259280 + L1M4 LINE L1 5186 5202 -944 1817 177 0 16 chr4 165069067 165069384 -37258963 + AluJb SINE Alu 1 312 0 608 211 30 0 chr4 165069394 165069527 -37258820 + MER89 LTR ERV1 423 559 0 666 261 75 66 chr4 165069529 165069673 -37258674 - L2 LINE L2 -726 2588 2447 1351 173 129 4 chr4 165069673 165069945 -37258402 + AluSx SINE Alu 1 306 -6 666 261 75 66 chr4 165069945 165070237 -37258110 - L2 LINE L2 -867 2447 2148 1839 150 7 7 chr4 165070301 165070601 -37257746 - AluJo SINE Alu 0 312 13 217 268 37 0 chr4 165070691 165070773 -37257574 - L2 LINE L2 -1189 2125 2041 262 275 9 37 chr4 165071266 165071375 -37256972 - L1MC/D LINE L1 -1961 5847 5742 710 185 0 22 chr4 165071377 165071561 -37256786 + CT-rich Low_complexity Low_complexity 1 180 0 507 202 0 0 chr4 165071571 165071655 -37256692 - AluJb SINE Alu -39 273 190 881 202 71 0 chr4 165071658 165071826 -37256521 - AluJb SINE Alu -46 266 87 557 292 177 24 chr4 165071829 165072225 -37256122 - L1MC/D LINE L1 -392 5729 5263 23 0 0 0 chr4 165072253 165072276 -37256071 + AT_rich Low_complexity Low_complexity 1 23 0 1745 186 6 6 chr4 165072287 165072598 -37255749 - AluJo SINE Alu -1 311 1 1317 160 63 63 chr4 165072654 165072809 -37255538 - AluJo SINE Alu -43 269 112 243 0 0 0 chr4 165072809 165072836 -37255511 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1317 160 63 63 chr4 165072836 165072949 -37255398 - AluJo SINE Alu -199 113 1 270 311 27 87 chr4 165073289 165073472 -37254875 - L2 LINE L2 -65 3207 3036 792 295 72 22 chr4 165073475 165073834 -37254513 - LTR16A LTR ERVL -53 397 21 1741 133 16 75 chr4 165074189 165074497 -37253850 - AluSx SINE Alu -22 290 1 855 164 0 43 chr4 165074527 165074667 -37253680 - AluJo SINE Alu -176 136 3 185 294 106 12 chr4 165075091 165075176 -37253171 - L2 LINE L2 -58 3214 3122 562 227 20 47 chr4 165075619 165075769 -37252578 - MIR SINE MIR -70 192 47 1212 248 84 31 chr4 165075796 165075954 -37252393 + L1ME3A LINE L1 5517 5665 -501 2313 143 8 27 chr4 165075954 165076325 -37252022 + THE1B LTR MaLR 1 364 0 1212 248 84 31 chr4 165076325 165076623 -37251724 + L1ME3A LINE L1 5665 6005 -161 984 179 6 0 chr4 165076649 165076805 -37251542 + MER2 DNA MER2_type 1 157 -188 386 195 11 69 chr4 165076806 165076893 -37251454 + Tigger3(Golem) DNA MER2_type 1 82 -2947 803 179 0 0 chr4 165076934 165077051 -37251296 - FLAM_C SINE Alu -16 117 1 904 193 70 0 chr4 165077051 165077238 -37251109 + Tigger3(Golem) DNA MER2_type 2731 2930 -99 451 152 14 243 chr4 165077238 165077437 -37250910 + L1MD3 LINE L1 7707 7827 -168 1535 177 3 40 chr4 165077437 165077736 -37250611 - AluJo SINE Alu -24 288 1 451 152 14 243 chr4 165077736 165077812 -37250535 + L1MD3 LINE L1 7827 7919 -76 229 219 296 15 chr4 165077863 165078059 -37250288 + L1ME3A LINE L1 5910 6160 -10 1805 141 114 18 chr4 165079185 165079526 -37248821 - THE1C LTR MaLR 0 375 2 201 227 0 0 chr4 165080189 165080233 -37248114 + G-rich Low_complexity Low_complexity 1 44 0 186 191 0 0 chr4 165080292 165080334 -37248013 + C-rich Low_complexity Low_complexity 4 45 0 321 222 17 28 chr4 165080609 165080789 -37247558 + GA-rich Low_complexity Low_complexity 2 179 0 694 193 10 135 chr4 165081256 165081463 -37246884 - MLT1C LTR MaLR 0 467 210 273 127 109 0 chr4 165081463 165081518 -37246829 + MLT1-int LTR MaLR 160 220 -1151 804 152 8 8 chr4 165081530 165081662 -37246685 + FLAM_C SINE Alu 1 132 -11 2535 209 55 74 chr4 165081662 165082393 -37245954 + MLT1-int LTR MaLR 248 964 -771 1355 144 86 16 chr4 165082658 165082901 -37245446 + Tigger7 DNA MER2_type 2232 2491 0 514 163 12 35 chr4 165083272 165083444 -37244903 + (TA)n Simple_repeat Simple_repeat 1 168 0 243 311 76 34 chr4 165083689 165083808 -37244539 - L2 LINE L2 0 3272 3149 233 235 118 0 chr4 165083820 165083905 -37244442 - MER112 DNA MER1_type -101 159 65 1011 167 37 42 chr4 165083968 165084184 -37244163 + MER20 DNA MER1_type 1 215 -4 268 252 68 117 chr4 165084289 165084495 -37243852 - MIR SINE MIR -6 256 61 620 142 108 8 chr4 165084495 165084615 -37243732 + FLAM_C SINE Alu 1 132 -1 252 122 0 0 chr4 165084874 165084915 -37243432 + (A)n Simple_repeat Simple_repeat 1 41 0 342 0 115 0 chr4 165085581 165085659 -37242688 + (TA)n Simple_repeat Simple_repeat 1 87 0 316 51 0 0 chr4 165085659 165085698 -37242649 + MLT2A2 LTR ERVL 415 453 0 28 48 0 0 chr4 165085908 165085950 -37242397 + AT_rich Low_complexity Low_complexity 1 42 0 465 274 68 36 chr4 165086235 165086454 -37241893 - MIR SINE MIR -36 226 1 340 350 15 7 chr4 165088383 165088520 -37239827 + L2 LINE L2 3134 3271 -1 2296 98 0 0 chr4 165089287 165089592 -37238755 - AluSg SINE Alu -5 305 1 23 54 0 0 chr4 165092256 165092293 -37236054 + AT_rich Low_complexity Low_complexity 1 37 0 762 236 63 30 chr4 165092582 165092819 -37235528 + MIR SINE MIR 15 259 -3 865 125 59 7 chr4 165092850 165093002 -37235345 + L1MB1 LINE L1 6014 6173 -16 283 339 72 60 chr4 165093092 165093425 -37234922 - L2 LINE L2 -340 2974 2638 30 27 0 0 chr4 165094169 165094206 -37234141 + AT_rich Low_complexity Low_complexity 1 37 0 2029 100 7 27 chr4 165094306 165094606 -37233741 - AluSq SINE Alu -15 298 5 654 234 6 11 chr4 165095224 165095399 -37232948 - MER104 DNA MER2_type -3 177 4 22 0 0 0 chr4 165095408 165095430 -37232917 + AT_rich Low_complexity Low_complexity 1 22 0 1520 192 60 67 chr4 165096096 165096544 -37231803 - MLT1C LTR MaLR 0 467 23 2858 257 89 47 chr4 165096546 165097127 -37231220 - L1MEc LINE L1 -2299 3781 3226 571 64 13 0 chr4 165097127 165097205 -37231142 + MADE1 DNA Mariner 2 80 0 2858 257 89 47 chr4 165097205 165097266 -37231081 - L1MEc LINE L1 -2854 3226 3169 2353 88 3 0 chr4 165097266 165097573 -37230774 - AluY SINE Alu -3 308 1 2858 257 89 47 chr4 165097573 165097794 -37230553 - L1MEc LINE L1 -2911 3169 2959 449 80 80 0 chr4 165097794 165097869 -37230478 - L1MA5A LINE L1 -3 6294 6214 2858 257 89 47 chr4 165097869 165098996 -37229351 - L1MEc LINE L1 -3121 2959 1726 390 162 64 29 chr4 165099043 165099216 -37229131 + (TA)n Simple_repeat Simple_repeat 2 180 0 512 288 111 52 chr4 165099220 165099879 -37228468 - L1MEc LINE L1 -4582 1679 982 280 228 39 39 chr4 165099881 165100008 -37228339 - L1ME LINE L1 -3344 2736 2610 775 282 85 77 chr4 165100012 165100803 -37227544 - L1ME LINE L1 -5170 900 104 436 292 113 32 chr4 165101715 165101900 -37226447 + MIR SINE MIR 45 244 -18 491 266 192 10 chr4 165101939 165102142 -37226205 + MIR SINE MIR 2 241 -21 297 309 163 8 chr4 165102261 165102384 -37225963 - MIR SINE MIR -101 161 20 391 186 9 62 chr4 165103975 165104088 -37224259 - L1MC5 LINE L1 -916 7045 6939 * 4626 141 54 7 chr4 165104065 165104404 -37223943 - L1PB4 LINE L1 0 6156 5834 333 0 0 0 chr4 165104404 165104441 -37223906 + (TG)n Simple_repeat Simple_repeat 2 38 0 4626 141 54 7 chr4 165104441 165104941 -37223406 - L1PB4 LINE L1 -322 5834 5278 618 323 156 11 chr4 165105477 165106049 -37222298 + L2 LINE L2 2629 3295 -18 810 262 5 5 chr4 165106822 165107013 -37221334 - MER58A DNA MER1_type -3 221 31 1746 138 13 34 chr4 165107375 165107673 -37220674 - AluSx SINE Alu -20 292 1 2014 126 14 3 chr4 165108887 165109181 -37219166 + AluSx SINE Alu 1 297 -15 21 57 0 0 chr4 165109941 165109976 -37218371 + AT_rich Low_complexity Low_complexity 1 35 0 210 229 0 0 chr4 165110216 165110286 -37218061 + (TA)n Simple_repeat Simple_repeat 2 71 0 22 35 0 0 chr4 165110753 165110782 -37217565 + AT_rich Low_complexity Low_complexity 1 29 0 221 278 28 0 chr4 165110953 165111025 -37217322 + A-rich Low_complexity Low_complexity 2 75 0 433 241 62 49 chr4 165111403 165111679 -37216668 - MER113 DNA MER1_type? -55 466 145 488 294 74 37 chr4 165111887 165112638 -37215709 - L1M LINE L1 -748 5398 4635 236 328 160 35 chr4 165114342 165114711 -37213636 + L2 LINE L2 2815 3229 -84 479 121 0 33 chr4 165114734 165114825 -37213522 - L1MA6 LINE L1 0 6300 6213 1961 154 0 3 chr4 165115293 165115598 -37212749 - AluJb SINE Alu -8 304 1 385 295 119 53 chr4 165116949 165117176 -37211171 - MIR SINE MIR -13 249 8 206 269 65 65 chr4 165117673 165117766 -37210581 + L2 LINE L2 3213 3305 -8 222 219 244 0 chr4 165117947 165118029 -37210318 + MIR SINE MIR 160 261 -1 261 0 0 0 chr4 165118183 165118212 -37210135 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 24 32 0 0 chr4 165118820 165118851 -37209496 + AT_rich Low_complexity Low_complexity 1 31 0 298 320 82 57 chr4 165119126 165119320 -37209027 - MIR3 SINE MIR -6 202 4 31 0 0 0 chr4 165120170 165120201 -37208146 + AT_rich Low_complexity Low_complexity 1 31 0 280 196 11 54 chr4 165120412 165120504 -37207843 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 239 224 104 40 chr4 165120526 165120651 -37207696 - L1ME LINE L1 -202 5919 5787 799 123 20 15 chr4 165121035 165121190 -37207157 + L1MB2 LINE L1 6004 6176 -7 207 379 17 0 chr4 165121797 165121855 -37206492 + L2 LINE L2 3128 3186 -86 2210 92 7 3 chr4 165121955 165122250 -37206097 + AluSp SINE Alu 1 296 -17 246 234 65 0 chr4 165122845 165122922 -37205425 - Charlie8 DNA MER1_type -2028 389 308 1984 166 113 14 chr4 165123572 165124005 -37204342 + LTR22 LTR ERVK 1 476 -33 1682 156 56 22 chr4 165124529 165124888 -37203459 - THE1C LTR MaLR -4 371 1 3843 137 118 15 chr4 165124889 165125560 -37202787 - THE1C-int LTR MaLR 0 1580 841 1518 176 55 30 chr4 165125560 165125889 -37202458 - THE1C LTR MaLR -38 337 1 28 48 0 0 chr4 165125934 165125976 -37202371 + AT_rich Low_complexity Low_complexity 1 42 0 2200 114 3 7 chr4 165126308 165126616 -37201731 + AluSx SINE Alu 1 307 -5 495 319 122 25 chr4 165126717 165126996 -37201351 - L2 LINE L2 -37 3276 2971 1762 281 167 29 chr4 165127015 165127557 -37200790 - L2 LINE L2 -505 2809 2343 1911 136 10 3 chr4 165127557 165127852 -37200495 + AluJb SINE Alu 1 297 -15 1966 160 0 6 chr4 165127852 165128165 -37200182 + AluSx SINE Alu 1 311 -1 1762 281 167 29 chr4 165128165 165128653 -37199694 - L2 LINE L2 -970 2344 1636 22 70 0 0 chr4 165129012 165129055 -37199292 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 165129480 165129502 -37198845 + AT_rich Low_complexity Low_complexity 1 22 0 3142 199 13 3 chr4 165129502 165130131 -37198216 - L1PA16 LINE L1 -995 5151 4517 * 5153 127 16 25 chr4 165130130 165130818 -37197529 + L1PA16 LINE L1 5143 5824 -342 2053 104 11 0 chr4 165130818 165131126 -37197221 + AluY SINE Alu 1 311 0 5153 127 16 25 chr4 165131126 165131384 -37196963 + L1PA16 LINE L1 5824 6083 -83 259 104 0 21 chr4 165131484 165131532 -37196815 + L1PA16 LINE L1 6118 6164 -2 344 244 0 13 chr4 165131937 165132015 -37196332 + MLT1L LTR MaLR 2 78 -537 687 275 106 57 chr4 165132472 165132652 -37195695 - MLT1J1 LTR MaLR 0 446 276 953 201 6 0 chr4 165132652 165132831 -37195516 - L1PB4 LINE L1 0 6156 5977 687 275 106 57 chr4 165132831 165133075 -37195272 - MLT1J1 LTR MaLR -170 276 1 263 247 11 0 chr4 165133128 165133217 -37195130 + (TATATG)n Simple_repeat Simple_repeat 6 95 0 663 255 20 25 chr4 165133225 165133421 -37194926 - MIR SINE MIR -10 252 58 419 178 158 46 chr4 165134541 165134693 -37193654 - L1ME3 LINE L1 -7 6155 5987 238 152 0 0 chr4 165135206 165135252 -37193095 - LTR66 LTR ERVL -171 439 394 228 133 0 0 chr4 165135217 165135262 -37193085 + LTR66 LTR ERVL 395 439 -171 * 353 261 69 31 chr4 165136036 165136166 -37192181 - HAL1b LINE L1 -465 883 749 541 297 59 57 chr4 165136348 165136541 -37191806 - HAL1b LINE L1 -765 583 392 1382 253 21 24 chr4 165136541 165136916 -37191431 + MLT1A2 LTR MaLR 1 374 0 541 297 59 57 chr4 165136916 165137210 -37191137 - HAL1b LINE L1 -956 392 95 1178 246 154 48 chr4 165138933 165139497 -37188850 - MLT1E2 LTR MaLR -2 624 1 2218 117 3 0 chr4 165139813 165140111 -37188236 - AluSg SINE Alu -9 301 3 234 306 7 76 chr4 165140172 165140316 -37188031 + L2 LINE L2 3173 3306 -7 202 345 0 23 chr4 165140589 165140676 -37187671 + MIR SINE MIR 19 103 -105 2250 119 0 0 chr4 165142041 165142343 -37186004 + AluSq SINE Alu 1 302 -11 333 316 88 9 chr4 165142915 165143029 -37185318 + MIR SINE MIR 20 142 -120 244 218 35 69 chr4 165143862 165143879 -37184468 + L2 LINE L2 3173 3189 -124 1791 194 93 55 chr4 165143879 165144303 -37184044 + MER67D LTR ERV1 1 448 -66 222 37 0 0 chr4 165144303 165144330 -37184017 + (TC)n Simple_repeat Simple_repeat 2 28 0 1791 194 93 55 chr4 165144330 165144400 -37183947 + MER67D LTR ERV1 448 514 0 244 218 35 69 chr4 165144400 165144469 -37183878 + L2 LINE L2 3189 3256 -57 397 293 64 48 chr4 165144500 165144688 -37183659 + MIR SINE MIR 21 211 -51 2281 94 3 3 chr4 165145225 165145532 -37182815 + AluY SINE Alu 1 307 -4 474 252 16 16 chr4 165146988 165147111 -37181236 - L2 LINE L2 0 3313 3191 363 302 103 52 chr4 165147336 165147545 -37180802 - MLT1J2 LTR MaLR -58 392 195 2271 109 71 6 chr4 165147545 165147885 -37180462 - THE1B LTR MaLR 0 364 3 10117 109 35 37 chr4 165147887 165149469 -37178878 - THE1B-int LTR MaLR 0 1580 1 2083 129 36 38 chr4 165149469 165149834 -37178513 - THE1B LTR MaLR 0 364 1 363 302 103 52 chr4 165149834 165150021 -37178326 - MLT1J2 LTR MaLR -254 196 1 1655 205 15 15 chr4 165150231 165150270 -37178077 + MLT2C1 LTR ERVL 1 39 -358 1870 179 28 6 chr4 165150270 165150627 -37177720 + MLT1A1 LTR MaLR 1 365 0 1655 205 15 15 chr4 165150627 165150918 -37177429 + MLT2C1 LTR ERVL 38 331 -66 265 322 22 0 chr4 165151355 165151445 -37176902 + MIR SINE MIR 53 144 -118 1682 181 134 29 chr4 165151456 165151941 -37176406 + LTR10A LTR ERV1 13 548 -61 312 241 65 9 chr4 165151960 165152068 -37176279 + MIR SINE MIR 149 262 0 1824 240 76 85 chr4 165152549 165153381 -37174966 + L2 LINE L2 1411 2234 -1080 320 161 0 0 chr4 165153381 165153437 -37174910 - MSTC LTR MaLR 0 428 373 234 0 0 0 chr4 165153437 165153463 -37174884 + (CA)n Simple_repeat Simple_repeat 2 27 0 371 156 0 11 chr4 165153470 165153560 -37174787 + (TA)n Simple_repeat Simple_repeat 1 89 0 2130 160 8 45 chr4 165153569 165153945 -37174402 - MSTC LTR MaLR -66 362 1 934 266 50 39 chr4 165153945 165154171 -37174176 + L2 LINE L2 2230 2463 -851 1743 174 45 3 chr4 165154171 165154458 -37173889 - AluSx SINE Alu -13 299 1 934 266 50 39 chr4 165154458 165154569 -37173778 + L2 LINE L2 2463 2571 -743 292 232 12 12 chr4 165154569 165154651 -37173696 - MER67D LTR ERV1 0 514 433 730 231 12 6 chr4 165154718 165154878 -37173469 - MER67C LTR ERV1 -306 404 244 328 374 0 0 chr4 165154880 165154979 -37173368 + L2 LINE L2 2850 2948 -366 212 250 0 19 chr4 165155245 165155297 -37173050 - L2 LINE L2 -9 3263 3213 195 305 0 51 chr4 165155312 165155371 -37172976 + L2 LINE L2 3206 3261 -11 232 352 75 15 chr4 165155438 165155637 -37172710 - MIR SINE MIR -50 212 2 218 217 43 0 chr4 165155642 165155688 -37172659 - MIR SINE MIR -63 145 98 201 327 73 33 chr4 165155912 165156062 -37172285 - L2 LINE L2 -361 2953 2798 260 141 70 28 chr4 165156072 165156143 -37172204 + (AATTG)n Simple_repeat Simple_repeat 4 77 0 30 27 0 0 chr4 165156144 165156181 -37172166 + AT_rich Low_complexity Low_complexity 1 37 0 257 169 0 99 chr4 165156397 165156468 -37171879 + L1ME2 LINE L1 5946 6009 -155 284 256 22 11 chr4 165156847 165156937 -37171410 + MIR3 SINE MIR 109 199 -9 33 66 0 0 chr4 165157078 165157139 -37171208 + AT_rich Low_complexity Low_complexity 1 61 0 195 225 50 0 chr4 165157616 165157656 -37170691 - MIR SINE MIR -59 149 108 185 236 34 124 chr4 165157673 165157762 -37170585 + MIR3 SINE MIR 81 161 -47 3636 121 93 8 chr4 165157813 165158407 -37169940 + LTR9B LTR ERV1 1 644 0 235 115 58 19 chr4 165159166 165159218 -37169129 + MLT1H LTR MaLR 493 546 -3 344 233 56 0 chr4 165159460 165159550 -37168797 + MIR SINE MIR 140 234 -28 83 58 0 0 chr4 165159757 165159896 -37168451 + AT_rich Low_complexity Low_complexity 1 139 0 3698 157 13 0 chr4 165160033 165160662 -37167685 - L1MC1 LINE L1 -9 6324 5688 247 275 25 0 chr4 165160686 165160766 -37167581 + MLT1L LTR MaLR 327 408 -207 269 342 18 0 chr4 165160799 165160913 -37167434 + MLT1L LTR MaLR 474 589 -26 380 233 67 6 chr4 165161316 165161421 -37166926 - MLT1J LTR MaLR -289 161 51 263 302 0 0 chr4 165161881 165161944 -37166403 + L2 LINE L2 3251 3313 0 1958 136 0 31 chr4 165162506 165162827 -37165520 + AluSx SINE Alu 1 312 0 403 276 89 0 chr4 165162962 165163085 -37165262 + MIR SINE MIR 116 249 -13 2265 114 144 5 chr4 165163936 165164312 -37164035 + MSTA LTR MaLR 1 428 0 9190 168 31 5 chr4 165164313 165165921 -37162426 + MSTA-int LTR MaLR 2 1651 0 1908 160 128 8 chr4 165165921 165166303 -37162044 + MSTA LTR MaLR 1 428 0 531 164 27 27 chr4 165167214 165167324 -37161023 + MLT1B LTR MaLR 1 110 -280 1435 230 106 34 chr4 165167685 165168159 -37160188 - MLT2B1 LTR ERVL -8 512 5 1297 204 83 4 chr4 165168321 165168585 -37159762 + MLT1B LTR MaLR 106 390 0 213 39 0 0 chr4 165169081 165169107 -37159240 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 4337 144 81 21 chr4 165169851 165170706 -37157641 + MER4D LTR ERV1 1 664 0 455 278 137 42 chr4 165170782 165171023 -37157324 + L2 LINE L2 2840 3103 -210 845 243 99 40 chr4 165171064 165171368 -37156979 - MER46C DNA MER2_type -7 331 10 269 278 0 0 chr4 165171410 165171482 -37156865 + L2 LINE L2 3158 3229 -84 295 268 159 51 chr4 165171641 165171779 -37156568 + MIR SINE MIR 2 154 -108 4162 223 59 34 chr4 165172030 165173551 -37154796 + L1MD2 LINE L1 4758 6328 -31 21 0 0 0 chr4 165173640 165173661 -37154686 + AT_rich Low_complexity Low_complexity 1 21 0 3652 212 10 50 chr4 165174078 165174969 -37153378 - L1MC2 LINE L1 -2 6342 5488 2088 201 16 5 chr4 165174971 165175400 -37152947 - L1MC3 LINE L1 -64 7721 7288 24 0 0 0 chr4 165176088 165176112 -37152235 + AT_rich Low_complexity Low_complexity 1 24 0 36 23 0 0 chr4 165177251 165177294 -37151053 + AT_rich Low_complexity Low_complexity 1 43 0 3604 167 40 15 chr4 165177419 165178167 -37150180 + L1MA4A LINE L1 4282 5048 -1098 * 24603 27 0 0 chr4 165178139 165181098 -37147249 + L1P LINE L1 2289 5247 -899 12087 24 0 0 chr4 165181198 165183381 -37144966 + L1PA2 LINE L1 3971 6153 -2 6039 148 30 10 chr4 165183353 165184634 -37143713 + L1MA4A LINE L1 5003 6303 0 1361 225 50 86 chr4 165185246 165185664 -37142683 - MLT1E LTR MaLR 0 593 191 237 119 0 0 chr4 165185665 165185707 -37142640 + (TA)n Simple_repeat Simple_repeat 2 43 0 273 57 0 0 chr4 165185742 165185777 -37142570 + (TA)n Simple_repeat Simple_repeat 2 36 0 273 302 225 11 chr4 165186682 165186864 -37141483 + L2 LINE L2 2601 2821 -493 24 32 0 0 chr4 165187336 165187367 -37140980 + AT_rich Low_complexity Low_complexity 1 31 0 631 268 116 35 chr4 165188497 165188695 -37139652 - MER20 DNA MER1_type 0 219 6 2759 335 87 38 chr4 165188852 165190873 -37137474 - MERVL LTR ERVL -882 4603 2423 2137 131 3 6 chr4 165190873 165191185 -37137162 + AluSx SINE Alu 1 311 -1 2759 335 87 38 chr4 165191185 165191804 -37136543 - MERVL LTR ERVL -3062 2423 1835 768 188 19 94 chr4 165192023 165192236 -37136111 - AluJo SINE Alu 0 312 116 3093 266 84 35 chr4 165192266 165194083 -37134264 - L1MEc LINE L1 -3879 2517 613 529 250 58 0 chr4 165194337 165194493 -37133854 + L1ME2 LINE L1 5992 6156 -8 253 352 11 0 chr4 165194668 165194756 -37133591 - MER5B DNA MER1_type 0 178 90 732 244 102 56 chr4 165194907 165195338 -37133009 + L1M4 LINE L1 3325 3775 -2371 753 299 100 17 chr4 165196604 165196965 -37131382 - MLT1I LTR MaLR -8 401 11 341 322 138 43 chr4 165197114 165197484 -37130863 + MLT1J LTR MaLR 99 503 -8 694 276 31 5 chr4 165199160 165199352 -37128995 + MIR SINE MIR 7 203 -59 38 61 0 0 chr4 165199426 165199492 -37128855 + AT_rich Low_complexity Low_complexity 1 66 0 304 277 44 29 chr4 165199733 165199870 -37128477 + L1M4 LINE L1 3780 3918 -2228 234 284 25 37 chr4 165199969 165200050 -37128297 + MLT2F LTR ERVL 45 124 -539 29 47 0 0 chr4 165200509 165200552 -37127795 + AT_rich Low_complexity Low_complexity 1 43 0 866 149 174 30 chr4 165200574 165200775 -37127572 - L1PA16 LINE L1 0 6166 5937 1694 107 12 0 chr4 165201005 165201257 -37127090 + L1PA13 LINE L1 5909 6163 0 242 84 60 24 chr4 165201518 165201601 -37126746 + (TTTA)n Simple_repeat Simple_repeat 2 87 0 462 262 28 0 chr4 165201604 165201711 -37126636 + MLT2B1 LTR ERVL 327 436 -84 587 232 8 0 chr4 165201762 165201887 -37126460 + Charlie1 DNA MER1_type 2061 2186 -575 3123 213 18 57 chr4 165201893 165202859 -37125488 + L1MA5 LINE L1 1232 2199 -4650 * 8165 181 46 53 chr4 165202854 165206332 -37122015 + L1MA5 LINE L1 3541 6985 -17 1124 157 10 113 chr4 165206336 165206629 -37121718 + Charlie1 DNA MER1_type 2171 2433 -328 1897 148 24 0 chr4 165206893 165207191 -37121156 - AluSx SINE Alu -7 305 1 1421 213 21 59 chr4 165207358 165207747 -37120600 + MLT1A2 LTR MaLR 1 374 0 192 303 34 56 chr4 165208016 165208105 -37120242 - L2 LINE L2 0 3313 3227 23 33 0 0 chr4 165208198 165208228 -37120119 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 165208516 165208537 -37119810 + AT_rich Low_complexity Low_complexity 1 21 0 2406 155 6 56 chr4 165209160 165209658 -37118689 - L1MB1 LINE L1 -5 6163 5691 515 218 0 0 chr4 165209661 165209748 -37118599 - Tigger7 DNA MER2_type 0 2487 2401 15961 145 25 6 chr4 165209748 165212417 -37115930 + Tigger2 DNA MER2_type 1 2718 0 931 179 6 0 chr4 165212418 165212591 -37115756 - Tigger7 DNA MER2_type -1961 526 353 * 948 254 0 0 chr4 165212588 165212773 -37115574 - Tigger7 DNA MER2_type -2301 186 2 1819 152 0 0 chr4 165212774 165213063 -37115284 - L1MB1 LINE L1 -479 5689 5401 21 0 0 0 chr4 165213950 165213971 -37114376 + AT_rich Low_complexity Low_complexity 1 21 0 232 214 0 0 chr4 165213987 165214029 -37114318 + Charlie6 DNA MER1_type 3060 3101 -399 361 339 145 0 chr4 165214029 165214215 -37114132 - MIR SINE MIR -47 215 3 252 86 0 0 chr4 165214215 165214250 -37114097 + (TC)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr4 165214403 165214425 -37113922 + AT_rich Low_complexity Low_complexity 1 22 0 31 44 0 0 chr4 165215320 165215365 -37112982 + AT_rich Low_complexity Low_complexity 1 45 0 1538 119 0 41 chr4 165217405 165217648 -37110699 - AluSg/x SINE Alu -10 300 68 5184 90 3 6 chr4 165217658 165218350 -37109997 + THE1A-int LTR MaLR 891 1580 0 2277 111 14 8 chr4 165218350 165218703 -37109644 + THE1A LTR MaLR 1 355 0 281 254 116 138 chr4 165218924 165219113 -37109234 + MIR SINE MIR 10 194 -68 486 366 64 64 chr4 165219189 165219640 -37108707 - L2 LINE L2 -4 3268 2818 413 365 76 4 chr4 165219666 165219904 -37108443 - L2 LINE L2 -571 2743 2489 * 1189 278 128 30 chr4 165219856 165220467 -37107880 + L2 LINE L2 1210 1880 -1434 23 33 0 0 chr4 165221173 165221203 -37107144 + AT_rich Low_complexity Low_complexity 1 30 0 1629 204 40 9 chr4 165221798 165222146 -37106201 + MLT1A1 LTR MaLR 1 359 -6 520 252 26 32 chr4 165222212 165222367 -37105980 + MER33 DNA MER1_type 7 160 -164 366 298 42 12 chr4 165222378 165222546 -37105801 + L1MCc LINE L1 33 205 -6218 318 241 86 43 chr4 165222964 165223080 -37105267 + L1MCc LINE L1 821 941 -5482 238 218 36 0 chr4 165223261 165223316 -37105031 + L1MCc LINE L1 1210 1266 -5157 1751 265 16 51 chr4 165223326 165224093 -37104254 + L1MCc LINE L1 1356 2095 -4846 1225 34 0 0 chr4 165225619 165225768 -37102579 - L1PA5 LINE L1 -5 6149 6001 911 289 144 12 chr4 165225896 165226480 -37101867 + L1MCc LINE L1 2269 2929 -4193 23 0 0 0 chr4 165226775 165226798 -37101549 + AT_rich Low_complexity Low_complexity 1 23 0 261 329 79 14 chr4 165227049 165227189 -37101158 + MIR SINE MIR 3 151 -111 310 307 85 33 chr4 165227311 165227464 -37100883 - L2 LINE L2 -904 2410 2250 2979 112 10 174 chr4 165227926 165228701 -37099646 + LTR12 LTR ERV1 58 705 -9 1160 143 0 0 chr4 165228701 165228876 -37099471 + AluSg/x SINE Alu 138 312 0 444 303 32 35 chr4 165229075 165229359 -37098988 + L1MEd LINE L1 927 1209 -4910 465 320 96 32 chr4 165229368 165229649 -37098698 + HAL1 LINE L1 1342 1640 -867 195 319 121 11 chr4 165230070 165230252 -37098095 - L2 LINE L2 -1203 2111 1910 268 261 76 43 chr4 165231004 165231096 -37097251 - MIR SINE MIR -59 203 109 192 333 14 0 chr4 165231425 165231497 -37096850 - L2 LINE L2 -2257 1057 985 391 311 10 0 chr4 165232174 165232277 -37096070 - LTR67 LTR ERVL -368 189 86 344 113 0 0 chr4 165232603 165232656 -37095691 + MADE1 DNA Mariner 1 53 -27 21 0 0 0 chr4 165233335 165233356 -37094991 + AT_rich Low_complexity Low_complexity 1 21 0 402 254 154 6 chr4 165234083 165234252 -37094095 - L1M4 LINE L1 -2189 3957 3764 218 347 36 48 chr4 165234364 165234531 -37093816 + MER5A DNA MER1_type 16 180 -9 323 333 19 19 chr4 165234645 165234804 -37093543 - HAL1b LINE L1 -489 859 701 382 77 0 0 chr4 165234825 165234877 -37093470 - MADE1 DNA Mariner 0 80 29 1674 100 28 4 chr4 165234877 165235128 -37093219 + AluSx SINE Alu 1 257 -55 5656 105 18 11 chr4 165235237 165236838 -37091509 - L1PA8A LINE L1 -116 6015 4400 302 304 25 80 chr4 165237142 165237379 -37090968 + HERVL LTR ERVL 3624 3847 -1638 393 223 98 3 chr4 165237541 165237648 -37090699 + HERVL LTR ERVL 4055 4177 -1311 407 251 85 119 chr4 165238215 165238777 -37089570 - LTR49-int LTR ERV1 -937 5394 4852 2227 102 0 0 chr4 165238845 165239138 -37089209 - AluSg SINE Alu -17 293 1 1693 157 42 18 chr4 165240021 165240358 -37087989 - L1MA8 LINE L1 -4 6287 5943 902 213 22 121 chr4 165240874 165241188 -37087159 - MLT1A1 LTR MaLR -82 283 1 24 0 0 0 chr4 165242471 165242495 -37085852 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr4 165244061 165244084 -37084263 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 165244457 165244485 -37083862 + AT_rich Low_complexity Low_complexity 1 28 0 929 108 0 8 chr4 165244587 165244717 -37083630 + FLAM_C SINE Alu 5 133 0 223 254 16 48 chr4 165244730 165244793 -37083554 - L2 LINE L2 -90 3182 3122 207 0 0 0 chr4 165245098 165245121 -37083226 + (CAA)n Simple_repeat Simple_repeat 2 24 0 28 61 0 0 chr4 165246443 165246492 -37081855 + AT_rich Low_complexity Low_complexity 1 49 0 447 305 146 32 chr4 165246598 165246969 -37081378 - L1MC/D LINE L1 -1986 5822 5410 324 264 21 79 chr4 165247061 165247201 -37081146 - L1MC/D LINE L1 -896 5250 5119 238 158 61 24 chr4 165247548 165247630 -37080717 + T-rich Low_complexity Low_complexity 3 87 0 24 32 0 0 chr4 165247776 165247807 -37080540 + AT_rich Low_complexity Low_complexity 1 31 0 883 78 9 0 chr4 165247907 165248022 -37080325 - AluSp/q SINE Alu -11 302 187 22 70 0 0 chr4 165248332 165248375 -37079972 + AT_rich Low_complexity Low_complexity 1 43 0 271 345 9 9 chr4 165248434 165248550 -37079797 - L1MC/D LINE L1 -2167 5641 5526 2415 86 0 0 chr4 165248604 165248908 -37079439 - AluSg SINE Alu -6 304 1 327 209 33 11 chr4 165248920 165249011 -37079336 - L1ME3A LINE L1 0 6170 6078 1485 305 43 16 chr4 165249012 165249657 -37078690 - L1ME3A LINE L1 -117 6053 5391 237 225 0 56 chr4 165249632 165249703 -37078644 + HAL1 LINE L1 2254 2320 -187 * 817 219 85 105 chr4 165250272 165250719 -37077628 - LTR37B LTR ERV1 -3 465 28 218 184 20 20 chr4 165251002 165251051 -37077296 - MER5A DNA MER1_type 0 189 141 1916 248 99 15 chr4 165251055 165251591 -37076756 + MLT1E LTR MaLR 11 591 -2 236 240 186 101 chr4 165251592 165251721 -37076626 + MER5A DNA MER1_type 50 189 0 25 31 0 0 chr4 165252285 165252317 -37076030 + AT_rich Low_complexity Low_complexity 1 32 0 218 306 163 0 chr4 165254429 165254527 -37073820 + L2 LINE L2 3185 3298 -15 655 288 11 69 chr4 165255746 165256020 -37072327 - MIR SINE MIR 0 262 5 334 332 26 33 chr4 165256179 165256357 -37071990 - MER5A DNA MER1_type -1 188 3 224 250 0 80 chr4 165257615 165257703 -37070644 + MER5B DNA MER1_type 76 156 -22 246 194 0 0 chr4 165258296 165258358 -37069989 + CT-rich Low_complexity Low_complexity 4 65 0 1103 232 156 72 chr4 165258641 165259128 -37069219 - MER119 DNA MER1_type -54 529 2 41 58 0 0 chr4 165259269 165259338 -37069009 + AT_rich Low_complexity Low_complexity 1 69 0 287 98 49 32 chr4 165259363 165259486 -37068861 + (TA)n Simple_repeat Simple_repeat 1 125 0 303 378 17 0 chr4 165259549 165259668 -37068679 - MIR3 SINE MIR -48 160 40 2221 111 0 0 chr4 165259901 165260207 -37068140 + AluSx SINE Alu 1 306 -6 617 288 93 67 chr4 165260214 165260631 -37067716 - ERVL LTR ERVL -2260 3394 2967 305 362 11 17 chr4 165260884 165261058 -37067289 - ERVL LTR ERVL -4106 1658 1486 1726 182 87 3 chr4 165261183 165261518 -37066829 - MLT1A1 LTR MaLR -2 363 1 970 303 46 48 chr4 165261662 165262117 -37066230 + MER20B DNA MER1_type 43 496 -287 38 75 0 0 chr4 165262123 165262203 -37066144 + AT_rich Low_complexity Low_complexity 1 80 0 853 169 7 0 chr4 165262774 165262916 -37065431 + FLAM_C SINE Alu 1 143 0 2094 293 48 38 chr4 165262928 165264190 -37064157 + L1MEc LINE L1 60 1333 -5063 962 278 37 23 chr4 165264190 165264625 -37063722 + L1MEc LINE L1 2406 2846 -3369 406 202 32 21 chr4 165265056 165265150 -37063197 + MSTC LTR MaLR 1 95 -270 2057 226 50 42 chr4 165265150 165265925 -37062422 + MLT1A1-int LTR MaLR 865 1735 0 904 216 28 122 chr4 165265928 165266322 -37062025 + MLT1A1 LTR MaLR 4 360 -5 346 277 36 9 chr4 165266549 165266661 -37061686 + MLT1K LTR MaLR 315 429 -159 1802 176 154 10 chr4 165266674 165267077 -37061270 - LOR1b LTR ERV1 0 461 1 321 218 0 0 chr4 165267122 165267200 -37061147 + CT-rich Low_complexity Low_complexity 2 79 0 207 0 0 0 chr4 165268508 165268531 -37059816 + (TA)n Simple_repeat Simple_repeat 1 23 0 196 281 47 0 chr4 165268655 165268719 -37059628 + MIR SINE MIR 166 232 -30 220 260 0 0 chr4 165269398 165269448 -37058899 - MER5B DNA MER1_type -3 175 126 2818 90 0 0 chr4 165269456 165269833 -37058514 + L1P5 LINE L1 5415 5791 -360 282 95 0 0 chr4 165269838 165269880 -37058467 + (CA)n Simple_repeat Simple_repeat 2 43 0 303 196 0 0 chr4 165269880 165269936 -37058411 - L1MC4 LINE L1 -1339 6703 6648 2443 80 34 6 chr4 165269946 165270297 -37058050 + L1PB1 LINE L1 5789 6149 -2 23 54 0 0 chr4 165270303 165270340 -37058007 + AT_rich Low_complexity Low_complexity 1 37 0 420 299 8 8 chr4 165270570 165270687 -37057660 - MER5B DNA MER1_type -61 117 1 322 314 0 0 chr4 165270709 165270795 -37057552 + MIR SINE MIR 43 128 -134 334 219 30 107 chr4 165271182 165271351 -37056996 - MER33 DNA MER1_type -149 175 20 351 265 122 0 chr4 165271366 165271464 -37056883 + MIR SINE MIR 33 142 -120 21 57 0 0 chr4 165271670 165271705 -37056642 + AT_rich Low_complexity Low_complexity 1 35 0 435 244 17 17 chr4 165272794 165272909 -37055438 + MIR SINE MIR 92 206 -56 2069 241 101 13 chr4 165272922 165273465 -37054882 + MLT1E LTR MaLR 1 591 -2 205 203 54 0 chr4 165273568 165273642 -37054705 + (TTA)n Simple_repeat Simple_repeat 2 79 0 247 314 9 9 chr4 165273953 165274058 -37054289 - L1ME3A LINE L1 -57 6113 6009 422 306 29 10 chr4 165274150 165274356 -37053991 - L1M4 LINE L1 -3594 2552 2343 248 217 29 0 chr4 165275826 165275895 -37052452 + (TA)n Simple_repeat Simple_repeat 1 71 0 236 365 28 9 chr4 165276382 165276489 -37051858 - L2 LINE L2 -17 3296 3188 676 334 56 48 chr4 165276591 165277220 -37051127 - L2 LINE L2 -556 2758 2125 26 30 0 0 chr4 165278028 165278061 -37050286 + AT_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chr4 165278094 165278131 -37050216 + AT_rich Low_complexity Low_complexity 1 37 0 182 36 0 36 chr4 165280503 165280531 -37047816 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2424 143 12 7 chr4 165281097 165281510 -37046837 - L1PB3 LINE L1 -3 6151 5737 992 256 122 47 chr4 165282285 165282754 -37045593 + LTR33A LTR ERVL 2 505 -18 193 358 24 24 chr4 165282838 165283003 -37045344 + L2 LINE L2 2766 2930 -384 235 278 14 0 chr4 165283508 165283580 -37044767 + CT-rich Low_complexity Low_complexity 1 73 0 21 0 0 0 chr4 165285460 165285481 -37042866 + GC_rich Low_complexity Low_complexity 1 21 0 212 0 36 0 chr4 165287386 165287414 -37040933 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 247 323 81 24 chr4 165287586 165287710 -37040637 + MARNA DNA Mariner 75 205 -381 359 234 67 141 chr4 165288215 165288514 -37039833 - MER102a DNA MER1_type -9 321 45 468 0 0 0 chr4 165288528 165288580 -37039767 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 21 71 0 0 chr4 165289011 165289053 -37039294 + AT_rich Low_complexity Low_complexity 1 42 0 995 160 0 6 chr4 165289110 165289279 -37039068 + MER3 DNA MER1_type 1 168 -41 1142 170 16 75 chr4 165289288 165289541 -37038806 - MER8 DNA MER2_type -1 238 1 234 0 0 0 chr4 165292076 165292102 -37036245 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 796 234 34 26 chr4 165292312 165292581 -37035766 - LTR37B LTR ERV1 0 468 198 237 312 52 39 chr4 165292621 165292775 -37035572 - LTR37B LTR ERV1 -270 198 43 622 188 68 15 chr4 165292789 165292922 -37035425 - MLT1H1 LTR MaLR -13 542 403 473 291 45 30 chr4 165293031 165293241 -37035106 - MLT1H1 LTR MaLR -328 239 32 858 175 13 0 chr4 165293469 165293623 -37034724 + L1PB3 LINE L1 5992 6147 -7 570 134 0 0 chr4 165294287 165294384 -37033963 - AluY SINE Alu -2 309 213 21 36 0 0 chr4 165295219 165295247 -37033100 + AT_rich Low_complexity Low_complexity 1 28 0 1402 219 105 19 chr4 165295961 165296371 -37031976 + MLT1C LTR MaLR 1 445 -22 420 263 75 59 chr4 165296430 165296616 -37031731 + MLT1L LTR MaLR 1 189 -426 298 338 88 0 chr4 165296743 165296891 -37031456 + MLT1L LTR MaLR 451 611 -4 526 310 134 33 chr4 165297288 165297617 -37030730 - L3 LINE CR1 -1 1576 1215 312 91 0 0 chr4 165297642 165297686 -37030661 + (CA)n Simple_repeat Simple_repeat 2 45 0 189 388 23 0 chr4 165297848 165297977 -37030370 - L3 LINE CR1 -760 817 686 2641 130 9 41 chr4 165298392 165298852 -37029495 - MER65A LTR ERV1 0 445 1 2277 234 75 20 chr4 165298852 165299936 -37028411 - MER65A-int LTR ERV1 0 4871 3603 270 180 148 9 chr4 165300020 165300054 -37028293 - MER65A-int LTR ERV1 -977 3959 3931 255 61 0 0 chr4 165300054 165300087 -37028260 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 270 180 148 9 chr4 165300087 165300193 -37028154 - MER65A-int LTR ERV1 -1005 3931 3272 595 186 0 17 chr4 165300195 165300313 -37028034 - MSTB1 LTR MaLR -56 376 261 1842 213 95 20 chr4 165300330 165301015 -37027332 - MER65A-int LTR ERV1 -1219 3717 3075 524 232 78 96 chr4 165301015 165301399 -37026948 - MER65A-int LTR ERV1 -1913 4418 4042 2277 174 31 5 chr4 165301406 165301821 -37026526 - MSTB LTR MaLR 0 426 1 8208 191 26 19 chr4 165301821 165303461 -37024886 - MSTB-int LTR MaLR 0 1651 1 2696 147 17 5 chr4 165303461 165303882 -37024465 - MSTB LTR MaLR 0 426 1 1112 172 31 41 chr4 165303882 165304173 -37024174 - MER65A-int LTR ERV1 -2581 4017 3730 660 203 45 55 chr4 165304255 165304457 -37023890 - MER65A-int LTR ERV1 -2863 3735 3536 312 234 0 9 chr4 165304466 165304573 -37023774 + (TCTA)n Simple_repeat Simple_repeat 1 106 0 1121 205 31 62 chr4 165304825 165305374 -37022973 - MER65A-int LTR ERV1 -4323 2435 1728 201 278 0 0 chr4 165305438 165305492 -37022855 + (TA)n Simple_repeat Simple_repeat 2 55 0 * 224 219 0 0 chr4 165305454 165305495 -37022852 + (TATG)n Simple_repeat Simple_repeat 3 43 0 2316 149 23 45 chr4 165305720 165306235 -37022112 - MER65A-int LTR ERV1 -6582 1538 1035 1788 247 83 34 chr4 165306238 165306850 -37021497 - MER65A-int LTR ERV1 -3796 1075 434 621 238 19 51 chr4 165306895 165307109 -37021238 - MER65A-int LTR ERV1 -4550 321 115 2197 147 17 32 chr4 165307231 165307552 -37020795 - MER65A LTR ERV1 0 445 130 2150 125 16 37 chr4 165307552 165307935 -37020412 + THE1C LTR MaLR 1 375 0 2197 147 17 32 chr4 165307935 165308020 -37020327 - MER65A LTR ERV1 -315 130 45 253 128 0 0 chr4 165308071 165308110 -37020237 - MER65A LTR ERV1 -406 39 1 198 328 101 17 chr4 165308751 165308870 -37019477 - L3 LINE CR1 -173 1404 1276 239 179 36 36 chr4 165308944 165309028 -37019319 + (TATAA)n Simple_repeat Simple_repeat 2 85 0 1324 240 90 15 chr4 165309102 165309123 -37019224 + L1ME1 LINE L1 4941 4959 -1225 1750 209 84 92 chr4 165309123 165309721 -37018626 + MLT1E LTR MaLR 1 593 0 1324 240 90 15 chr4 165309721 165310318 -37018029 + L1ME1 LINE L1 4959 5597 -587 1889 228 99 88 chr4 165310340 165310955 -37017392 + MLT1E2 LTR MaLR 1 624 -2 1629 275 26 6 chr4 165310957 165311498 -37016849 + L1ME1 LINE L1 5611 6162 -4 1385 265 38 12 chr4 165311561 165312040 -37016307 + L1ME3 LINE L1 5480 5970 -192 351 267 55 27 chr4 165312043 165312189 -37016158 + L1ME3 LINE L1 6006 6155 -7 25 75 0 0 chr4 165312237 165312290 -37016057 + AT_rich Low_complexity Low_complexity 1 53 0 546 242 153 12 chr4 165313005 165313204 -37015143 - MIR SINE MIR -3 259 34 747 241 0 0 chr4 165313290 165313435 -37014912 + FRAM SINE Alu 1 145 -31 25 83 0 0 chr4 165313549 165313609 -37014738 + AT_rich Low_complexity Low_complexity 1 60 0 378 286 126 15 chr4 165313997 165314203 -37014144 + MIR SINE MIR 2 230 -32 24 53 0 0 chr4 165314293 165314331 -37014016 + AT_rich Low_complexity Low_complexity 1 38 0 2266 105 3 0 chr4 165314621 165314925 -37013422 + AluSg SINE Alu 1 305 -5 499 280 108 9 chr4 165315563 165315777 -37012570 - L1MC/D LINE L1 -2004 5804 5570 665 126 0 9 chr4 165315803 165315914 -37012433 + L1PB1 LINE L1 6041 6150 -1 599 329 76 33 chr4 165317295 165317717 -37010630 - L2 LINE L2 -418 2896 2457 21 82 0 0 chr4 165318398 165318447 -37009900 + AT_rich Low_complexity Low_complexity 1 49 0 245 284 32 21 chr4 165318880 165318975 -37009372 - MLT1J2 LTR MaLR -288 162 67 1568 258 61 71 chr4 165319388 165320185 -37008162 + L1ME LINE L1 6 833 -5247 1983 88 39 3 chr4 165320185 165320490 -37007857 + L1PA7 LINE L1 5837 6152 -2 1568 258 61 71 chr4 165320490 165321145 -37007202 + L1ME LINE L1 833 1493 -4587 1744 255 66 17 chr4 165321181 165321926 -37006421 + L1ME LINE L1 2187 2967 -3113 1042 258 148 5 chr4 165321946 165322520 -37005827 + L1ME LINE L1 3038 3693 -2387 2366 43 3 7 chr4 165322520 165322826 -37005521 + AluY SINE Alu 1 305 0 22 0 0 0 chr4 165326049 165326071 -37002276 + AT_rich Low_complexity Low_complexity 1 22 0 260 397 43 0 chr4 165326172 165326288 -37002059 - L2 LINE L2 -31 3241 3121 301 244 78 11 chr4 165326322 165326412 -37001935 - MLT1H LTR MaLR -7 542 447 1751 175 34 6 chr4 165326863 165327188 -37001159 + MER7A DNA MER2_type 2 333 -13 5562 134 19 1 chr4 165327744 165328618 -36999729 - L1PA15 LINE L1 -9 6156 5267 227 305 11 21 chr4 165329314 165329409 -36998938 - MLT1H-int LTR MaLR -1272 99 6 442 275 145 34 chr4 165329416 165329641 -36998706 - MLT1H LTR MaLR -2 590 323 2276 122 11 8 chr4 165331643 165331997 -36996350 + THE1A LTR MaLR 1 355 0 1345 43 27 37 chr4 165332060 165332247 -36996100 + L1PA4 LINE L1 5969 6153 -2 3013 115 14 21 chr4 165332319 165332831 -36995516 + L1MA4 LINE L1 5787 6294 -6 3840 149 42 14 chr4 165333662 165334032 -36994315 - L1MB1 LINE L1 0 6168 5810 453 36 0 0 chr4 165334032 165334087 -36994260 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 3840 149 42 14 chr4 165334087 165334262 -36994085 - L1MB1 LINE L1 -358 5810 5641 2099 105 31 3 chr4 165334262 165334556 -36993791 - AluSg SINE Alu -8 302 1 3840 149 42 14 chr4 165334556 165334719 -36993628 - L1MB1 LINE L1 -527 5641 5439 483 18 0 0 chr4 165336041 165336097 -36992250 + (TGGA)n Simple_repeat Simple_repeat 2 57 0 22 0 0 0 chr4 165336361 165336383 -36991964 + AT_rich Low_complexity Low_complexity 1 22 0 2633 106 96 5 chr4 165336579 165337005 -36991342 + MER4C LTR ERV1 1 465 0 5606 153 129 86 chr4 165337022 165338462 -36989885 + MER4C-int LTR ERV1 24 1401 -5197 4544 142 90 11 chr4 165338462 165339299 -36989048 - MER4D LTR ERV1 0 903 1 5606 153 129 86 chr4 165339299 165339585 -36988762 + MER4C-int LTR ERV1 1401 1673 -4925 207 0 0 0 chr4 165339585 165339608 -36988739 + (TA)n Simple_repeat Simple_repeat 1 23 0 5606 153 129 86 chr4 165339608 165340193 -36988154 + MER4C-int LTR ERV1 1673 2485 -4113 1675 226 58 33 chr4 165339890 165340473 -36987874 + LTR57-int LTR ERVL 988 1585 -3758 * 14838 158 52 48 chr4 165340285 165341459 -36986888 + MER4C-int LTR ERV1 2735 3903 -2695 1545 215 3 7 chr4 165341459 165341766 -36986581 + AluJb SINE Alu 1 306 -6 14838 158 52 48 chr4 165341766 165342838 -36985509 + MER4C-int LTR ERV1 3903 4969 -1629 2182 122 0 0 chr4 165342838 165343132 -36985215 - AluSg SINE Alu -16 294 1 14838 158 52 48 chr4 165343132 165344536 -36983811 + MER4C-int LTR ERV1 4969 6404 -194 293 45 0 23 chr4 165344536 165344580 -36983767 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 14838 158 52 48 chr4 165344580 165344762 -36983585 + MER4C-int LTR ERV1 6404 6584 -14 2783 96 86 2 chr4 165344780 165345209 -36983138 + MER4C LTR ERV1 1 465 0 314 264 45 45 chr4 165345466 165345576 -36982771 + MIR SINE MIR 49 158 -104 3440 62 0 7 chr4 165345698 165346149 -36982198 + LTR7 LTR ERV1 1 448 -2 19668 84 14 16 chr4 165346151 165349143 -36979204 + HERVH LTR ERV1 1 2987 -4726 1041 174 19 5 chr4 165349654 165349861 -36978486 - HERVH LTR ERV1 -1904 5809 5600 4093 147 1 1 chr4 165349862 165350524 -36977823 - HERVH LTR ERV1 -2564 5149 4488 2719 77 10 0 chr4 165350526 165350929 -36977418 - HERVH LTR ERV1 -3720 3993 3587 2304 105 0 0 chr4 165351538 165351842 -36976505 + AluSg SINE Alu 1 304 -6 2094 100 0 43 chr4 165352775 165353075 -36975272 + AluSg1 SINE Alu 4 290 -19 414 235 9 21 chr4 165353896 165354125 -36974222 + GA-rich Low_complexity Low_complexity 1 226 0 1524 235 60 9 chr4 165356472 165356918 -36971429 - MER119 DNA MER1_type -114 469 1 301 299 31 10 chr4 165357087 165357184 -36971163 - L2 LINE L2 -11 3261 3163 301 218 59 6 chr4 165357273 165357443 -36970904 + (TA)n Simple_repeat Simple_repeat 1 179 0 408 170 22 0 chr4 165357456 165357591 -36970756 + (TA)n Simple_repeat Simple_repeat 2 139 0 17595 40 6 2 chr4 165358433 165361373 -36966974 - L1PA5 LINE L1 -7 6147 3200 21758 68 2 1 chr4 165361374 165364346 -36964001 + L1PA5 LINE L1 204 3179 -2967 528 183 183 11 chr4 165365065 165365128 -36963219 + LTR37B LTR ERV1 239 290 -178 363 44 0 0 chr4 165365128 165365173 -36963174 + (TG)n Simple_repeat Simple_repeat 2 46 0 528 183 183 11 chr4 165365173 165365284 -36963063 + LTR37B LTR ERV1 290 443 -25 622 139 65 0 chr4 165366015 165366123 -36962224 + L1MA5A LINE L1 6179 6293 -4 2030 224 40 22 chr4 165368025 165368520 -36959827 + MLT1D LTR MaLR 2 505 0 1333 203 37 9 chr4 165368966 165369287 -36959060 + MER63B DNA MER1_type 1 330 -106 370 233 16 0 chr4 165369295 165369558 -36958789 + (TA)n Simple_repeat Simple_repeat 1 267 0 305 248 16 41 chr4 165369885 165370006 -36958341 - MER103 DNA DNA -47 119 2 186 286 127 0 chr4 165370359 165370422 -36957925 - MIR SINE MIR -101 161 91 219 221 0 58 chr4 165370946 165371032 -36957315 + T-rich Low_complexity Low_complexity 2 82 0 871 214 74 29 chr4 165371063 165371372 -36956975 - L1ME3A LINE L1 0 6170 5848 252 208 14 42 chr4 165371399 165371471 -36956876 + MER63A DNA MER1_type 104 173 -37 1201 234 89 66 chr4 165372337 165372845 -36955502 - MLT1F LTR MaLR -2 591 3 244 250 0 15 chr4 165373174 165373242 -36955105 - MLT1K LTR MaLR 0 588 522 519 17 0 0 chr4 165373302 165373362 -36954985 + (TC)n Simple_repeat Simple_repeat 1 60 0 909 72 0 0 chr4 165373893 165374043 -36954304 - AluSg/x SINE Alu 0 320 171 201 329 112 33 chr4 165375694 165375846 -36952501 + L3b LINE CR1 1309 1472 -111 2098 137 0 0 chr4 165379733 165380033 -36948314 - AluSx SINE Alu -12 300 1 2390 77 0 3 chr4 165380046 165380356 -36947991 - AluY SINE Alu -2 309 1 351 278 79 16 chr4 165380589 165380715 -36947632 - L2 LINE L2 0 3313 3180 1696 165 3 34 chr4 165381917 165382241 -36946106 + AluJb SINE Alu 1 315 0 5086 182 16 16 chr4 165383981 165385015 -36943332 + L1MCa LINE L1 2 1035 -5391 2132 119 6 13 chr4 165385021 165385332 -36943015 + AluSx SINE Alu 3 311 -1 635 215 0 0 chr4 165385378 165385508 -36942839 + MLT1A1 LTR MaLR 1 130 -235 1302 146 133 32 chr4 165385509 165385666 -36942681 + L1MCa LINE L1 1579 1719 -4707 2108 118 32 35 chr4 165385666 165386040 -36942307 + THE1C LTR MaLR 3 375 0 1302 146 133 32 chr4 165386040 165386277 -36942070 + L1MCa LINE L1 1719 2112 -4314 226 214 10 41 chr4 165386284 165386382 -36941965 - L1MEc LINE L1 -5297 1013 919 319 350 7 69 chr4 165386394 165386697 -36941650 - L1MEc LINE L1 -5234 885 602 2403 301 66 14 chr4 165387134 165388224 -36940123 - L2 LINE L2 -2 3311 2157 192 125 0 0 chr4 165388610 165388642 -36939705 + (TG)n Simple_repeat Simple_repeat 1 32 0 622 170 21 43 chr4 165389359 165389500 -36938847 + MLT1A1 LTR MaLR 1 138 -227 1646 200 11 50 chr4 165390020 165390400 -36937947 + MLT1A1 LTR MaLR 1 365 0 834 247 118 104 chr4 165390426 165391294 -36937053 + HAL1b LINE L1 159 1048 -300 2224 85 4 0 chr4 165391294 165391575 -36936772 + AluSx SINE Alu 19 300 -12 834 247 118 104 chr4 165391575 165391863 -36936484 + HAL1b LINE L1 1048 1331 -17 22 35 0 0 chr4 165391896 165391925 -36936422 + AT_rich Low_complexity Low_complexity 1 29 0 32 26 0 0 chr4 165392306 165392345 -36936002 + AT_rich Low_complexity Low_complexity 1 39 0 500 259 89 6 chr4 165392660 165392818 -36935529 - MER5B DNA MER1_type -4 174 4 195 114 0 0 chr4 165393767 165393802 -36934545 + (CAAAAA)n Simple_repeat Simple_repeat 1 35 0 858 211 109 80 chr4 165393816 165394191 -36934156 + MLT1D LTR MaLR 3 388 -117 562 248 13 27 chr4 165394225 165394374 -36933973 + MER63A DNA MER1_type 64 210 0 1276 223 179 14 chr4 165394774 165395167 -36933180 + MLT2B2 LTR ERVL 1 474 -41 225 0 0 0 chr4 165395167 165395192 -36933155 + (GA)n Simple_repeat Simple_repeat 2 26 0 1276 223 179 14 chr4 165395192 165395233 -36933114 + MLT2B2 LTR ERVL 474 507 -8 11506 140 34 8 chr4 165396063 165397945 -36930402 - Ricksha_c DNA DNA -1252 2002 151 1242 123 5 10 chr4 165397945 165398140 -36930207 + L1PA8A LINE L1 5938 6131 0 11506 140 34 8 chr4 165398140 165398286 -36930061 - Ricksha_c DNA DNA -3103 151 10 213 369 83 13 chr4 165399252 165399409 -36928938 - MIR SINE MIR -89 173 6 228 301 49 14 chr4 165401203 165401346 -36927001 - LTR16C LTR ERVL -60 431 284 937 137 44 20 chr4 165401635 165401839 -36926508 - L1MA7 LINE L1 -1 6290 6082 2178 110 13 7 chr4 165402357 165402667 -36925680 - AluSx SINE Alu 0 312 1 302 239 74 49 chr4 165403743 165403906 -36924441 - MER112 DNA MER1_type -91 169 3 27 62 0 0 chr4 165404013 165404061 -36924286 + AT_rich Low_complexity Low_complexity 1 48 0 189 390 24 55 chr4 165404061 165404225 -36924122 - L2 LINE L2 -54 3218 3060 2193 90 3 21 chr4 165404455 165404744 -36923603 + AluSg SINE Alu 1 284 -26 492 298 94 44 chr4 165404782 165404936 -36923411 - LTR16A LTR ERVL -16 434 289 1361 78 0 0 chr4 165404936 165405116 -36923231 + L1PA5 LINE L1 5973 6152 -2 492 298 94 44 chr4 165405116 165405374 -36922973 - LTR16A LTR ERVL -161 289 1 2184 128 0 7 chr4 165406683 165406989 -36921358 + AluSx SINE Alu 1 304 -8 631 179 11 78 chr4 165407331 165407510 -36920837 + MLT1A2 LTR MaLR 1 167 -198 189 147 0 0 chr4 165407510 165407544 -36920803 + (TC)n Simple_repeat Simple_repeat 2 35 0 676 228 41 15 chr4 165407562 165407759 -36920588 + MLT1A2 LTR MaLR 173 374 0 380 299 94 84 chr4 165407839 165408220 -36920127 + L1MC/D LINE L1 5258 5642 -2166 430 329 88 27 chr4 165408753 165409048 -36919299 - L2 LINE L2 -1 3312 3000 26 0 0 0 chr4 165409049 165409075 -36919272 + AT_rich Low_complexity Low_complexity 1 26 0 1197 210 33 109 chr4 165409108 165409503 -36918844 - MLT1A1 LTR MaLR 0 365 1 464 229 63 63 chr4 165410289 165410494 -36917853 - MIR SINE MIR -57 205 1 235 293 13 13 chr4 165410957 165411032 -36917315 + MIR SINE MIR 20 94 -168 416 319 63 0 chr4 165411088 165411279 -36917068 + LTR33 LTR ERVL 15 217 -304 495 263 80 6 chr4 165411351 165411526 -36916821 + LTR33 LTR ERVL 331 518 -3 1771 52 5 0 chr4 165411765 165412036 -36916311 - AluY SINE Alu 0 345 74 273 29 0 0 chr4 165412509 165412543 -36915804 + (CA)n Simple_repeat Simple_repeat 2 35 0 286 246 29 0 chr4 165412578 165412647 -36915700 - L2 LINE L2 -1 3271 3201 226 158 74 95 chr4 165412980 165413075 -36915272 + LTR50 LTR ERVL 26 118 -677 605 259 6 19 chr4 165413252 165413410 -36914937 - MER5B DNA MER1_type -22 156 1 317 260 104 11 chr4 165413516 165413638 -36914709 + MIR SINE MIR 11 148 -60 388 286 94 31 chr4 165413662 165413854 -36914493 - MIR SINE MIR -37 225 22 2152 95 0 3 chr4 165415181 165415464 -36912883 + AluY SINE Alu 1 282 -29 222 62 0 0 chr4 165415467 165415499 -36912848 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1493 236 39 15 chr4 165415499 165415889 -36912458 - L1PA12 LINE L1 -7182 399 1 254 296 256 12 chr4 165417377 165417549 -36910798 - MIR SINE MIR -3 259 46 758 296 57 24 chr4 165419033 165419368 -36908979 + LTR16A LTR ERVL 52 397 -53 2877 110 12 0 chr4 165419504 165419931 -36908416 + LTR3 LTR ERVK 1 432 0 1283 135 116 0 chr4 165420006 165420213 -36908134 - AluSx SINE Alu -20 292 62 9992 181 32 31 chr4 165420274 165423545 -36904802 - L1MA9 LINE L1 -5 7267 3997 256 47 23 23 chr4 165423545 165423588 -36904759 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 775 230 20 0 chr4 165423600 165423748 -36904599 - FAM SINE Alu -33 152 2 705 225 149 12 chr4 165423749 165423998 -36904349 - L1MA9 LINE L1 -3106 4000 3718 2505 246 61 39 chr4 165424009 165424432 -36903915 - L1MA9 LINE L1 -3969 3137 2725 2155 79 0 4 chr4 165424432 165424710 -36903637 - AluY SINE Alu -10 301 25 2505 246 61 39 chr4 165424710 165426376 -36901971 - L1MA9 LINE L1 -4381 2725 1300 1055 171 28 32 chr4 165426455 165426706 -36901641 - L1MA9 LINE L1 -6780 250 1 191 86 0 29 chr4 165426806 165426841 -36901506 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 297 267 199 7 chr4 165429558 165429704 -36898643 + MIR SINE MIR 55 228 -34 1881 100 23 15 chr4 165430184 165430443 -36897904 - AluSx SINE Alu -17 295 35 21 71 0 0 chr4 165431799 165431841 -36896506 + AT_rich Low_complexity Low_complexity 1 42 0 4599 148 78 8 chr4 165432573 165433417 -36894930 + MER4D LTR ERV1 1 903 0 337 266 38 57 chr4 165433557 165433715 -36894632 + L1ME4a LINE L1 5964 6118 -3 2834 132 5 2 chr4 165433762 165434193 -36894154 - MER57B LTR ERV1 0 434 3 25 0 0 0 chr4 165435268 165435293 -36893054 + AT_rich Low_complexity Low_complexity 1 25 0 541 244 0 8 chr4 165435454 165435585 -36892762 + LTR16A1 LTR ERVL 301 430 -27 26 0 0 0 chr4 165435608 165435634 -36892713 + AT_rich Low_complexity Low_complexity 1 26 0 2135 120 0 0 chr4 165435913 165436212 -36892135 + AluSg SINE Alu 1 299 -11 736 286 83 8 chr4 165436544 165436785 -36891562 + MIR SINE MIR 2 260 -2 21 0 0 0 chr4 165437473 165437494 -36890853 + AT_rich Low_complexity Low_complexity 1 21 0 276 315 102 0 chr4 165437766 165437874 -36890473 - MIR3 SINE MIR -6 202 84 766 214 12 17 chr4 165438698 165438871 -36889476 + LTR28 LTR ERV1 1 172 -848 6975 163 42 49 chr4 165438960 165443316 -36885031 - LTR27-int LTR ERV1 -393 4824 406 507 255 97 69 chr4 165443308 165443555 -36884792 - LTR27-int LTR ERV1 -6837 254 1 * 791 188 91 147 chr4 165443561 165444230 -36884117 - LTR27 LTR ERV1 -3 633 2 24 0 0 0 chr4 165444681 165444705 -36883642 + AT_rich Low_complexity Low_complexity 1 24 0 3204 250 74 17 chr4 165446210 165447735 -36880612 - L1ME1 LINE L1 0 6560 4929 1804 186 28 28 chr4 165447744 165448099 -36880248 - MLT2B1 LTR ERVL -165 355 1 425 312 33 43 chr4 165448365 165448641 -36879706 - L1ME1 LINE L1 -6211 329 57 635 278 47 51 chr4 165448862 165449096 -36879251 + MIR SINE MIR 6 238 -24 237 327 0 0 chr4 165449414 165449469 -36878878 - MER5A DNA MER1_type -77 112 58 280 259 0 35 chr4 165451568 165451653 -36876694 + L1MCa LINE L1 22 103 -6323 577 281 114 3 chr4 165451672 165451978 -36876369 - L1M4 LINE L1 -3404 2742 2403 407 197 14 0 chr4 165451978 165452049 -36876298 + MSTB1 LTR MaLR 108 179 -247 6643 33 0 0 chr4 165452049 165453080 -36875267 - L1P2 LINE L1 -543 5612 4582 1315 165 50 4 chr4 165453080 165453322 -36875025 + MSTB1 LTR MaLR 180 432 0 730 195 0 0 chr4 165453350 165453478 -36874869 - MSTD LTR MaLR -266 130 3 833 304 175 12 chr4 165453478 165454075 -36874272 + L2 LINE L2 2325 3019 -294 580 211 47 41 chr4 165454309 165454480 -36873867 + L2 LINE L2 3119 3290 -23 310 254 135 16 chr4 165454953 165455079 -36873268 - L2 LINE L2 -1537 1777 1637 301 303 0 13 chr4 165455189 165455265 -36873082 - MIR3 SINE MIR -25 183 109 212 275 63 42 chr4 165455271 165455413 -36872934 + L2 LINE L2 2592 2736 -578 1782 134 196 6 chr4 165455466 165455824 -36872523 + MSTA LTR MaLR 1 426 -2 21 57 0 0 chr4 165455867 165455902 -36872445 + AT_rich Low_complexity Low_complexity 1 35 0 242 258 76 15 chr4 165455954 165456020 -36872327 + MER5B DNA MER1_type 4 73 -105 * 466 243 33 20 chr4 165456016 165456218 -36872129 + L2 LINE L2 2794 2991 -281 183 322 91 41 chr4 165456380 165456501 -36871846 + L2 LINE L2 3182 3308 -5 385 340 112 15 chr4 165456502 165456708 -36871639 - L3 LINE CR1 -90 1487 1262 1783 178 3 0 chr4 165456755 165457048 -36871299 - AluJb SINE Alu -18 294 1 27 49 0 0 chr4 165457323 165457364 -36870983 + AT_rich Low_complexity Low_complexity 1 41 0 1407 69 9 28 chr4 165457469 165457686 -36870661 + HERVH LTR ERV1 7501 7713 0 3387 69 2 7 chr4 165457686 165458136 -36870211 + LTR7 LTR ERV1 1 448 -2 377 297 59 47 chr4 165458831 165459087 -36869260 - MIR SINE MIR -1 261 4 2288 128 0 0 chr4 165461777 165462082 -36866265 + AluSx SINE Alu 1 305 -7 1315 230 42 17 chr4 165462110 165462466 -36865881 - MLT1A1 LTR MaLR 0 365 1 332 366 23 43 chr4 165462834 165463005 -36865342 - MIR SINE MIR -65 143 6 319 201 112 128 chr4 165463699 165463827 -36864520 - L1ME4a LINE L1 -3 6118 5992 2240 117 0 0 chr4 165463827 165464135 -36864212 + AluSc SINE Alu 1 308 -1 319 201 112 128 chr4 165464135 165464185 -36864162 - L1ME4a LINE L1 -129 5992 5943 237 264 35 58 chr4 165464392 165464479 -36863868 + MER5B DNA MER1_type 4 88 -90 504 239 46 86 chr4 165464492 165464689 -36863658 + MER110-int LTR ERV1 2036 2224 -2423 288 173 36 65 chr4 165464689 165464828 -36863519 + (TATAA)n Simple_repeat Simple_repeat 2 136 0 1284 316 44 42 chr4 165464887 165465640 -36862707 + MER110-int LTR ERV1 2272 3025 -1622 572 249 117 56 chr4 165467031 165467280 -36861067 + LTR16A1 LTR ERVL 186 449 -8 197 32 0 32 chr4 165467403 165467434 -36860913 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 25 51 0 0 chr4 165468155 165468194 -36860153 + AT_rich Low_complexity Low_complexity 1 39 0 401 284 134 9 chr4 165468213 165468445 -36859902 + MIR SINE MIR 2 262 0 1221 172 4 92 chr4 165468513 165468691 -36859656 - MSTB1 LTR MaLR -1 431 282 2113 117 17 10 chr4 165468691 165468991 -36859356 + AluSx SINE Alu 3 304 -8 1221 172 4 92 chr4 165468991 165469074 -36859273 - MSTB1 LTR MaLR -150 282 193 180 214 0 89 chr4 165470113 165470169 -36858178 - L2 LINE L2 -1608 1706 1656 206 205 0 0 chr4 165470240 165470279 -36858068 + MIR SINE MIR 218 256 -6 203 216 20 0 chr4 165472113 165472164 -36856183 + (TA)n Simple_repeat Simple_repeat 1 52 0 275 300 0 0 chr4 165472823 165472893 -36855454 + CT-rich Low_complexity Low_complexity 3 72 0 2180 41 26 0 chr4 165472927 165473241 -36855106 + L1PA4 LINE L1 5865 6185 0 2269 85 0 3 chr4 165473250 165473543 -36854804 + AluSc SINE Alu 1 292 -17 1005 192 50 140 chr4 165474257 165474658 -36853689 - MLT1A1 LTR MaLR 0 365 1 23 68 0 0 chr4 165474897 165474941 -36853406 + AT_rich Low_complexity Low_complexity 1 44 0 2143 199 29 7 chr4 165475206 165475614 -36852733 + MSTB LTR MaLR 1 417 -9 226 349 93 23 chr4 165475618 165475790 -36852557 + L2 LINE L2 2574 2757 -557 404 287 50 63 chr4 165477007 165477324 -36851023 + L1MEd LINE L1 917 1229 -4890 355 383 13 0 chr4 165477299 165477448 -36850899 + HAL1 LINE L1 1455 1605 -885 * 636 318 100 0 chr4 165477452 165477691 -36850656 + MLT1J1 LTR MaLR 54 316 -130 280 264 33 16 chr4 165477849 165477970 -36850377 + L1MEd LINE L1 2409 2531 -3598 405 307 80 64 chr4 165478263 165478589 -36849758 - L1M4 LINE L1 -2451 3695 3365 213 190 0 63 chr4 165478801 165478880 -36849467 + (TTATA)n Simple_repeat Simple_repeat 5 78 0 262 324 15 0 chr4 165478888 165479024 -36849323 - L1ME LINE L1 -281 5883 5746 242 206 43 54 chr4 165479225 165479293 -36849054 - L1ME LINE L1 -649 5513 5445 1057 216 52 17 chr4 165479293 165479524 -36848823 + MER8 DNA MER2_type 1 239 0 242 206 43 54 chr4 165479524 165479547 -36848800 - L1ME LINE L1 -717 5445 5423 616 293 84 66 chr4 165480204 165480596 -36847751 - LTR33A LTR ERVL 0 523 125 733 232 6 12 chr4 165481010 165481178 -36847169 + MER58 DNA MER1_type 19 185 -2235 401 110 0 122 chr4 165481384 165481466 -36846881 + MADE1 DNA Mariner 7 78 -2 1556 334 91 21 chr4 165481523 165482550 -36845797 + L2 LINE L2 1851 2948 -366 29 47 0 0 chr4 165482787 165482830 -36845517 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr4 165483150 165483182 -36845165 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr4 165483199 165483224 -36845123 + AT_rich Low_complexity Low_complexity 1 25 0 2018 181 18 91 chr4 165483400 165483908 -36844439 + MER70A LTR ERVL 1 471 -1 29 47 0 0 chr4 165484218 165484261 -36844086 + AT_rich Low_complexity Low_complexity 1 43 0 351 202 0 131 chr4 165485201 165485300 -36843047 - Charlie1 DNA MER1_type -2675 86 1 21 36 0 0 chr4 165486990 165487018 -36841329 + AT_rich Low_complexity Low_complexity 1 28 0 1972 187 50 8 chr4 165488013 165488415 -36839932 - MSTB1 LTR MaLR -8 424 6 225 209 0 0 chr4 165488684 165488727 -36839620 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1444 179 73 7 chr4 165489546 165489848 -36838499 - MLT1A1 LTR MaLR -33 332 11 3743 103 13 2 chr4 165490138 165490682 -36837665 + L1PB2 LINE L1 5591 6140 -11 243 61 0 0 chr4 165490707 165490740 -36837607 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 635 241 139 20 chr4 165491643 165491911 -36836436 + MLT1J2 LTR MaLR 2 300 -150 458 97 0 14 chr4 165493610 165493682 -36834665 + MLT2B3 LTR ERVL 1 71 -483 2107 189 55 36 chr4 165493779 165494250 -36834097 + MLT2B3 LTR ERVL 75 554 0 2184 100 0 35 chr4 165495222 165495533 -36832814 + AluSq SINE Alu 9 308 -5 27 29 0 0 chr4 165495730 165495764 -36832583 + AT_rich Low_complexity Low_complexity 1 34 0 185 237 0 13 chr4 165495844 165495920 -36832427 + (TATATG)n Simple_repeat Simple_repeat 1 75 0 291 143 0 0 chr4 165496099 165496148 -36832199 + L2 LINE L2 3264 3312 -1 306 325 0 0 chr4 165496225 165496308 -36832039 - L3 LINE CR1 -802 775 693 6742 44 7 0 chr4 165497168 165498034 -36830313 - L1PA5 LINE L1 -1 6153 5282 284 276 82 10 chr4 165498365 165498463 -36829884 + MIR SINE MIR 128 232 -30 351 200 42 0 chr4 165498836 165498931 -36829416 - MER53 DNA DNA 0 189 91 208 255 0 0 chr4 165499302 165499349 -36828998 + A-rich Low_complexity Low_complexity 4 50 0 382 299 39 35 chr4 165499449 165499855 -36828492 + L1ME3 LINE L1 889 1338 -4866 * 956 294 44 21 chr4 165499852 165500467 -36827880 + L1ME3 LINE L1 3691 4319 -1810 286 128 122 100 chr4 165500762 165500880 -36827467 + MLT1F LTR MaLR 410 536 -13 1045 263 157 36 chr4 165500900 165501209 -36827138 + L1ME3 LINE L1 4311 4581 -1564 2146 128 0 0 chr4 165501209 165501499 -36826848 - AluSx SINE Alu -20 292 3 1045 263 157 36 chr4 165501499 165502742 -36825605 + L1ME3 LINE L1 4581 6056 -89 210 212 15 30 chr4 165502756 165502822 -36825525 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 262 102 0 0 chr4 165502824 165502873 -36825474 + LTR66 LTR ERVL 394 442 -168 2312 87 0 7 chr4 165503842 165504141 -36824206 - AluY SINE Alu -14 297 1 1923 202 80 31 chr4 165504292 165504782 -36823565 - LTR40a LTR ERVL -2 517 4 229 305 135 14 chr4 165505392 165505533 -36822814 + MIR SINE MIR 7 164 -98 180 200 0 0 chr4 165506230 165506275 -36822072 + GA-rich Low_complexity Low_complexity 1 45 0 303 299 11 11 chr4 165506374 165506461 -36821886 - MIR3 SINE MIR -10 198 112 3761 132 27 14 chr4 165506931 165507558 -36820789 + MER41B LTR ERV1 1 635 0 202 157 20 20 chr4 165508122 165508173 -36820174 + A-rich Low_complexity Low_complexity 3 53 0 291 342 39 61 chr4 165509296 165509527 -36818820 - MIR SINE MIR -25 237 12 566 295 33 6 chr4 165509647 165509830 -36818517 + MIR SINE MIR 75 262 0 5081 216 45 26 chr4 165510250 165511792 -36816555 - L1MB7 LINE L1 -1 6183 4570 2984 100 0 2 chr4 165511792 165512213 -36816134 - L1PB1 LINE L1 -2 6149 5730 5081 216 45 26 chr4 165512213 165513193 -36815154 - L1MB7 LINE L1 -1614 4570 3611 878 241 89 67 chr4 165513193 165513642 -36814705 + MLT1C LTR MaLR 1 459 -8 2273 245 24 22 chr4 165513657 165514506 -36813841 - L1MB7 LINE L1 -2534 3612 2763 254 351 26 34 chr4 165515464 165515732 -36812615 - L1MEc LINE L1 -5628 768 503 365 308 30 34 chr4 165515968 165516202 -36812145 - L1MEc LINE L1 -6128 268 36 222 37 0 0 chr4 165516243 165516270 -36812077 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1995 143 0 0 chr4 165516273 165516552 -36811795 - AluSx SINE Alu -33 279 1 290 303 56 13 chr4 165517535 165517766 -36810581 + L1ME LINE L1 4573 4813 -1333 283 259 290 0 chr4 165517962 165518093 -36810254 - LTR16A LTR ERVL 0 450 282 589 311 91 52 chr4 165518475 165519038 -36809309 - HERV16 LTR ERVL -438 5326 4742 496 336 67 32 chr4 165519101 165519535 -36808812 - HERV16 LTR ERVL -863 4622 4174 585 303 16 56 chr4 165519979 165520030 -36808317 - HERV16 LTR ERVL -3792 1204 1152 1582 110 0 9 chr4 165520030 165520248 -36808099 - AluSc SINE Alu -14 295 80 585 303 16 56 chr4 165520248 165520315 -36808032 - HERV16 LTR ERVL -3844 1152 1084 1963 158 14 22 chr4 165520315 165520683 -36807664 - MLT1A1 LTR MaLR 0 365 1 585 303 16 56 chr4 165520683 165520886 -36807461 - HERV16 LTR ERVL -3912 1084 895 1402 122 5 5 chr4 165520894 165521116 -36807231 - pTR5 LTR ERV1 -2046 392 171 260 245 31 20 chr4 165521118 165521216 -36807131 - LTR30 LTR ERV1 -80 642 544 4410 150 66 39 chr4 165521216 165522298 -36806049 - pTR5 LTR ERV1 -413 2025 743 363 274 34 0 chr4 165522310 165522427 -36805920 - HERV16 LTR ERVL -4121 875 755 1071 330 72 12 chr4 165522484 165523126 -36805221 - HERV16 LTR ERVL -4316 680 1 608 352 84 25 chr4 165523126 165523529 -36804818 - LTR16A LTR ERVL 0 450 24 629 66 19 19 chr4 165523582 165523688 -36804659 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 420 294 62 39 chr4 165523752 165524421 -36803926 + L1ME LINE L1 5121 5797 -369 621 274 47 19 chr4 165524670 165524882 -36803465 + L2 LINE L2 3096 3313 0 1992 143 7 13 chr4 165525217 165525525 -36802822 - AluSx SINE Alu -1 311 6 34 65 0 0 chr4 165525771 165525833 -36802514 + AT_rich Low_complexity Low_complexity 1 62 0 294 281 138 63 chr4 165528377 165528764 -36799583 - L2 LINE L2 -76 3237 2280 933 104 0 7 chr4 165531187 165531331 -36797016 - L1MA4A LINE L1 -361 5942 5800 1873 154 32 3 chr4 165531331 165531673 -36796674 + L1MA4A LINE L1 5940 6292 -11 1738 182 3 10 chr4 165532315 165532611 -36795736 + AluJo SINE Alu 1 294 -18 204 326 0 0 chr4 165532647 165532693 -36795654 - L2 LINE L2 -19 3294 3249 930 166 0 0 chr4 165533217 165533356 -36794991 + AluJb SINE Alu 162 300 -12 363 280 188 21 chr4 165533475 165533661 -36794686 - MIR SINE MIR -26 236 20 277 333 94 0 chr4 165533841 165533979 -36794368 - L2 LINE L2 -1 3312 3162 25 0 0 0 chr4 165534136 165534161 -36794186 + AT_rich Low_complexity Low_complexity 1 25 0 1167 289 122 34 chr4 165734472 165735112 -36593235 - HERV16 LTR ERVL -3828 1168 473 1933 155 7 0 chr4 165735515 165735819 -36592528 - AluJb SINE Alu -6 306 1 1013 283 17 39 chr4 165735855 165736212 -36592135 - LTR16B LTR ERVL 0 464 116 972 261 55 42 chr4 165736344 165736651 -36591696 + MLT1E1 LTR MaLR 324 634 -20 1713 167 56 14 chr4 165736740 165737100 -36591247 - THE1C LTR MaLR 0 375 1 1999 126 3 22 chr4 165737548 165737865 -36590482 + AluSq SINE Alu 1 311 -2 679 341 85 0 chr4 165737896 165738262 -36590085 + LTR16B LTR ERVL 68 464 0 257 208 89 30 chr4 165738595 165738696 -36589651 + L1M4 LINE L1 4405 4511 -1635 1881 141 57 49 chr4 165738704 165738768 -36589579 + LTR9 LTR ERV1 5 67 -545 387 60 0 0 chr4 165738768 165738818 -36589529 + (TG)n Simple_repeat Simple_repeat 1 50 0 1881 141 57 49 chr4 165738818 165739122 -36589225 + LTR9 LTR ERV1 67 376 -236 4282 214 46 8 chr4 165739122 165741072 -36587275 + L1MA8 LINE L1 2415 4441 -3124 576 213 14 7 chr4 165741176 165741317 -36587030 + L1MA8 LINE L1 5961 6102 -1463 * 3962 154 81 19 chr4 165741307 165742138 -36586209 + L1MA8 LINE L1 6825 7706 -4 2954 69 34 0 chr4 165742164 165742626 -36585721 - L1PA7 LINE L1 -493 5661 5186 3698 72 4 4 chr4 165742626 165743122 -36585225 + L1PA7 LINE L1 5654 6151 -3 26 50 0 0 chr4 165743171 165743211 -36585136 + AT_rich Low_complexity Low_complexity 1 40 0 253 297 103 11 chr4 165743304 165743479 -36584868 + L1ME LINE L1 5557 5747 -374 2152 124 0 0 chr4 165743502 165743808 -36584539 + AluSx SINE Alu 1 306 -6 22 35 0 0 chr4 165743960 165743989 -36584358 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 165744286 165744307 -36584040 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr4 165744626 165744658 -36583689 + AT_rich Low_complexity Low_complexity 1 32 0 198 191 0 0 chr4 165745352 165745399 -36582948 + (CA)n Simple_repeat Simple_repeat 2 48 0 2447 76 0 0 chr4 165746606 165746909 -36581438 - AluY SINE Alu -8 303 1 1633 126 30 4 chr4 165748296 165748565 -36579782 - AluY SINE Alu 0 311 36 2133 48 26 4 chr4 165749233 165749503 -36578844 - AluY SINE Alu 0 311 36 254 243 14 0 chr4 165750311 165750381 -36577966 + CT-rich Low_complexity Low_complexity 2 72 0 242 241 84 12 chr4 165752551 165752634 -36575713 + MER103 DNA DNA 3 91 -75 350 391 84 25 chr4 165755370 165755859 -36572488 - L2 LINE L2 -638 2676 2159 2312 132 60 12 chr4 165755859 165756261 -36572086 - MSTA LTR MaLR -7 421 1 9033 181 17 2 chr4 165756261 165757889 -36570458 - MSTA-int LTR MaLR 0 1651 1 2359 157 41 10 chr4 165757889 165758304 -36570043 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr4 165759176 165759198 -36569149 + AT_rich Low_complexity Low_complexity 1 22 0 563 271 107 47 chr4 165759635 165760036 -36568311 + MER57B LTR ERV1 1 427 -7 26 30 0 0 chr4 165760341 165760374 -36567973 + AT_rich Low_complexity Low_complexity 1 33 0 399 337 59 59 chr4 165761335 165761583 -36566764 + L2 LINE L2 1292 1542 -1772 2188 101 0 3 chr4 165761583 165761881 -36566466 + AluSc SINE Alu 5 301 -8 399 337 59 59 chr4 165761881 165762038 -36566309 + L2 LINE L2 1541 1697 -1617 457 116 116 0 chr4 165762067 165762153 -36566194 + MER4A LTR ERV1 3 98 -566 361 96 19 0 chr4 165762153 165762205 -36566142 + MER4A LTR ERV1 261 313 -351 1347 117 0 0 chr4 165762290 165762478 -36565869 + MER4B LTR ERV1 381 568 -42 4599 187 23 36 chr4 165762641 165764460 -36563887 - L1PA15 LINE L1 0 6165 4314 2186 146 13 16 chr4 165764460 165764836 -36563511 + THE1C LTR MaLR 1 375 0 4599 187 23 36 chr4 165764836 165764855 -36563492 - L1PA15 LINE L1 -1851 4314 4296 260 213 0 0 chr4 165764857 165764918 -36563429 + A-rich Low_complexity Low_complexity 1 61 0 531 244 0 15 chr4 165764936 165765067 -36563280 - L1PA15 LINE L1 -1840 4306 4178 2376 74 0 0 chr4 165765524 165765823 -36562524 - AluY SINE Alu -12 299 1 2088 135 0 0 chr4 165766139 165766435 -36561912 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr4 165766450 165766471 -36561876 + AT_rich Low_complexity Low_complexity 1 21 0 2216 276 74 57 chr4 165767098 165768196 -36560151 + MER69 DNA AcHobo 12 1127 -1399 433 178 141 0 chr4 165768246 165768381 -36559966 + MER69 DNA AcHobo 2336 2489 -37 22 0 0 0 chr4 165768587 165768609 -36559738 + AT_rich Low_complexity Low_complexity 1 22 0 547 266 151 33 chr4 165768764 165769035 -36559312 + L2 LINE L2 2254 2556 -758 1897 138 43 32 chr4 165769035 165769404 -36558943 + THE1C LTR MaLR 1 373 -2 7298 119 2 51 chr4 165769409 165770606 -36557741 + THE1C-int LTR MaLR 4 1142 -438 22 94 0 0 chr4 165771039 165771103 -36557244 + AT_rich Low_complexity Low_complexity 1 64 0 310 401 58 11 chr4 165772487 165772846 -36555501 - L2 LINE L2 -340 2974 2599 264 298 149 18 chr4 165772882 165773050 -36555297 - L2 LINE L2 -825 2489 2300 449 99 56 0 chr4 165773101 165773172 -36555175 + MADE1 DNA Mariner 1 75 -5 215 79 26 0 chr4 165774501 165774539 -36553808 + (TC)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr4 165775000 165775023 -36553324 + AT_rich Low_complexity Low_complexity 1 23 0 36 102 0 0 chr4 165775084 165775211 -36553136 + AT_rich Low_complexity Low_complexity 1 127 0 295 314 26 21 chr4 165775507 165775698 -36552649 - L1MC4a LINE L1 -1898 5910 5719 22 0 0 0 chr4 165775789 165775811 -36552536 + AT_rich Low_complexity Low_complexity 1 22 0 306 323 32 19 chr4 165776609 165776764 -36551583 - L1MC4a LINE L1 -1417 4729 4573 331 313 72 30 chr4 165777116 165777282 -36551065 + MIR SINE MIR 14 186 -76 436 275 17 0 chr4 165778143 165778263 -36550084 + MER94 DNA DNA 12 133 -1 27 0 0 0 chr4 165779816 165779843 -36548504 + AT_rich Low_complexity Low_complexity 1 27 0 1262 211 4 11 chr4 165780615 165780890 -36547457 - L1 LINE L1 -1204 4942 4670 538 217 0 0 chr4 165780890 165780981 -36547366 + L1PB4 LINE L1 6046 6151 -5 2051 102 7 33 chr4 165781629 165781933 -36546414 - AluSx SINE Alu -16 296 1 29 0 0 0 chr4 165782724 165782753 -36545594 + AT_rich Low_complexity Low_complexity 1 29 0 340 369 22 63 chr4 165783607 165783739 -36544608 + L1MEd LINE L1 374 491 -5628 4296 199 46 26 chr4 165783739 165784759 -36543588 - MER45B DNA AcHobo 0 1040 1 340 369 22 63 chr4 165784759 165784894 -36543453 + L1MEd LINE L1 491 630 -5489 630 254 94 47 chr4 165785026 165785345 -36543002 - L1ME3A LINE L1 -12 6158 5825 2134 173 6 6 chr4 165785429 165785793 -36542554 - MLT1A1 LTR MaLR 0 365 2 617 256 147 16 chr4 165785799 165786186 -36542161 - L1ME3A LINE L1 -459 5711 5265 733 217 21 0 chr4 165786187 165786330 -36542017 - Tigger5 DNA MER2_type -3 2320 2175 1994 161 59 32 chr4 165786330 165786734 -36541613 + MSTC LTR MaLR 1 415 -13 889 122 0 0 chr4 165786739 165786870 -36541477 - Tigger5 DNA MER2_type -141 2182 2052 1575 150 78 70 chr4 165786975 165787255 -36541092 - MLT1B LTR MaLR 0 390 105 2200 101 7 0 chr4 165787255 165787553 -36540794 - AluSg SINE Alu -10 300 1 1575 150 78 70 chr4 165787553 165787659 -36540688 - MLT1B LTR MaLR -285 105 1 2377 225 53 11 chr4 165787839 165788408 -36539939 - MLT1E LTR MaLR 0 593 1 1240 272 131 10 chr4 165788964 165789465 -36538882 + MLT1F1 LTR MaLR 1 553 -14 287 319 0 11 chr4 165789688 165789782 -36538565 - MLT1J2 LTR MaLR -286 164 72 216 330 47 19 chr4 165790458 165790564 -36537783 + L2 LINE L2 3159 3267 -5 509 271 26 86 chr4 165791399 165791614 -36536733 - MIR SINE MIR -55 207 9 27 81 0 0 chr4 165792849 165792911 -36535436 + AT_rich Low_complexity Low_complexity 1 62 0 228 284 14 128 chr4 165795490 165795631 -36532716 - MIR3 SINE MIR -15 193 69 36 0 0 0 chr4 165795678 165795714 -36532633 + AT_rich Low_complexity Low_complexity 1 36 0 254 261 84 7 chr4 165796072 165796214 -36532133 - L1MEc LINE L1 -4658 1738 1586 1685 216 72 70 chr4 165796214 165796715 -36531632 + MLT1D LTR MaLR 1 502 -3 640 301 76 22 chr4 165796741 165797203 -36531144 - L1MEc LINE L1 -4842 1554 1068 2933 204 74 105 chr4 165797239 165797766 -36530581 - L1MC3 LINE L1 -55 7730 7188 235 352 0 0 chr4 165797766 165797857 -36530490 - MLT1F1 LTR MaLR -442 125 35 2933 204 74 105 chr4 165797857 165798379 -36529968 - L1MC3 LINE L1 -597 7188 6627 345 236 47 38 chr4 165798380 165798486 -36529861 - MLT1B LTR MaLR -2 388 282 636 131 0 10 chr4 165798488 165798587 -36529760 + MER4A LTR ERV1 1 98 -566 1636 126 19 78 chr4 165798587 165798953 -36529394 + MER4A LTR ERV1 261 663 -1 864 199 52 68 chr4 165798962 165799213 -36529134 - MLT1B LTR MaLR -115 275 29 2346 271 71 46 chr4 165799344 165800168 -36528179 - L1MEc LINE L1 -5352 1044 189 2044 142 0 16 chr4 165800168 165800484 -36527863 - AluSx SINE Alu -1 311 1 2346 271 71 46 chr4 165800484 165800657 -36527690 - L1MEc LINE L1 -6207 189 22 250 404 73 11 chr4 165800805 165801080 -36527267 + L2 LINE L2 1710 2001 -1313 23 0 0 0 chr4 165801154 165801177 -36527170 + AT_rich Low_complexity Low_complexity 1 23 0 1856 126 83 23 chr4 165801567 165801916 -36526431 + THE1C LTR MaLR 1 370 -5 4683 110 17 15 chr4 165801916 165802968 -36525379 - L1PA10 LINE L1 -227 5941 4895 1149 124 31 21 chr4 165802968 165803187 -36525160 + L1PA10 LINE L1 5967 6168 0 2256 153 5 16 chr4 165803233 165803612 -36524735 - THE1C LTR MaLR 0 375 1 366 241 43 21 chr4 165804717 165804858 -36523489 + L1ME2 LINE L1 5898 6041 -123 684 261 63 19 chr4 165806754 165807022 -36521325 + L1M4c LINE L1 1593 1872 -4512 1190 223 128 12 chr4 165807044 165807363 -36520984 + MLT1A1 LTR MaLR 10 365 0 3532 231 60 88 chr4 165807367 165808764 -36519583 + MLT1A1-int LTR MaLR 5 1362 -9 1849 179 40 9 chr4 165808780 165809126 -36519221 + MLT1A1 LTR MaLR 9 365 0 1707 177 3 10 chr4 165809253 165809541 -36518806 + AluJo SINE Alu 2 287 -25 237 40 120 60 chr4 165809601 165809651 -36518696 - L1ME4a LINE L1 0 6121 6069 2155 90 0 7 chr4 165810201 165810489 -36517858 - AluSc SINE Alu -19 290 5 494 282 41 18 chr4 165811047 165811217 -36517130 - MER63B DNA MER1_type -241 195 22 558 313 166 31 chr4 165811251 165811667 -36516680 + LTR33A LTR ERVL 2 473 -50 302 267 138 53 chr4 165811701 165811926 -36516421 - LTR41 LTR ERVL -20 753 510 740 233 42 14 chr4 165812226 165812441 -36515906 - LTR41 LTR ERVL -552 221 1 197 267 13 40 chr4 165812736 165812811 -36515536 - L2 LINE L2 -6 3266 3194 360 0 0 0 chr4 165812899 165812939 -36515408 + (ATG)n Simple_repeat Simple_repeat 3 42 0 348 305 95 46 chr4 165812999 165813261 -36515086 - L2 LINE L2 -232 3040 2771 283 266 193 18 chr4 165813473 165813582 -36514765 + MLT1A1 LTR MaLR 4 131 -411 1085 249 0 107 chr4 165813584 165813922 -36514425 + MLT1F1 LTR MaLR 172 473 -94 427 270 20 0 chr4 165815063 165815163 -36513184 + MER58B DNA MER1_type 240 341 0 818 338 63 68 chr4 165816102 165817152 -36511195 + L2 LINE L2 2261 3313 0 919 250 25 17 chr4 165817709 165817945 -36510402 - MIR SINE MIR -22 240 3 1012 241 4 37 chr4 165818619 165818864 -36509483 - MER8 DNA MER2_type -1 238 2 714 271 24 12 chr4 165818980 165819227 -36509120 - L1M4 LINE L1 -2129 4017 3768 272 163 0 0 chr4 165819218 165819267 -36509080 + L1MC4 LINE L1 6655 6703 -1339 * 254 229 16 0 chr4 165819267 165819328 -36509019 + (TA)n Simple_repeat Simple_repeat 2 63 0 536 239 112 10 chr4 165819328 165819525 -36508822 - L1M4 LINE L1 -2373 3773 3557 274 284 39 0 chr4 165819535 165819637 -36508710 - L1M4 LINE L1 -2670 3476 3371 * 2710 178 13 12 chr4 165819631 165819763 -36508584 - L1M1 LINE L1 -508 5792 5662 2447 54 3 3 chr4 165819763 165820059 -36508288 - AluY SINE Alu -15 296 1 2710 178 13 12 chr4 165820059 165820765 -36507582 - L1M1 LINE L1 -638 5662 4853 320 235 104 9 chr4 165821288 165821403 -36506944 - L1ME4a LINE L1 -1 6120 5995 188 340 0 0 chr4 165821449 165821499 -36506848 + MIR SINE MIR 213 262 0 6095 189 31 11 chr4 165821799 165821920 -36506427 - L1PA16 LINE L1 -16 6150 6033 2105 124 0 3 chr4 165821920 165822219 -36506128 - AluSx SINE Alu -14 298 1 6095 189 31 11 chr4 165822219 165823489 -36504858 - L1PA16 LINE L1 -133 6033 4698 213 39 0 0 chr4 165823489 165823515 -36504832 + (TAATG)n Simple_repeat Simple_repeat 1 26 0 6095 189 31 11 chr4 165823515 165824218 -36504129 - L1PA16 LINE L1 -1468 4698 4011 30 27 0 0 chr4 165824464 165824501 -36503846 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr4 165824735 165824764 -36503583 + AT_rich Low_complexity Low_complexity 1 29 0 1709 177 38 91 chr4 165824912 165825307 -36503040 - MLT1A1 LTR MaLR 0 365 1 1211 75 0 0 chr4 165825506 165825666 -36502681 - AluY SINE Alu -18 293 134 2306 79 0 31 chr4 165826061 165826379 -36501968 + AluY SINE Alu 1 308 -3 5099 45 2 0 chr4 165827693 165828319 -36500028 + L1PA5 LINE L1 5524 6150 -4 4659 154 0 8 chr4 165828324 165829072 -36499275 + THE1-int LTR MaLR 458 1199 -381 22 0 0 0 chr4 165830477 165830499 -36497848 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr4 165830760 165830801 -36497546 + AT_rich Low_complexity Low_complexity 1 41 0 210 37 0 0 chr4 165831171 165831198 -36497149 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr4 165831278 165831300 -36497047 + AT_rich Low_complexity Low_complexity 1 22 0 3026 137 82 24 chr4 165831681 165832220 -36496127 - MER41B LTR ERV1 -65 570 1 774 200 0 82 chr4 165832220 165832415 -36495932 - L1M4b LINE L1 -6676 183 5 224 299 178 0 chr4 165832690 165832797 -36495550 + MIR SINE MIR 3 128 -134 321 118 132 29 chr4 165832800 165832868 -36495479 - MADE1 DNA Mariner -5 75 1 39 80 0 0 chr4 165834407 165834495 -36493852 + AT_rich Low_complexity Low_complexity 1 88 0 2184 100 17 0 chr4 165835749 165836039 -36492308 + AluSp SINE Alu 2 296 -17 184 236 83 28 chr4 165836854 165836926 -36491421 - MIR3 SINE MIR -43 165 90 1712 149 10 55 chr4 165837209 165837517 -36490830 - AluJo SINE Alu -18 294 1 347 300 180 0 chr4 165838131 165838281 -36490066 + MIR SINE MIR 76 252 -10 4380 178 133 11 chr4 165838889 165841053 -36487294 - L1PA16 LINE L1 -146 6020 3516 3229 253 26 24 chr4 165841073 165842099 -36486248 - L1PA16 LINE L1 -3411 2735 1708 2222 116 0 3 chr4 165842678 165842989 -36485358 - AluSx SINE Alu -2 310 1 395 117 0 0 chr4 165843707 165843767 -36484580 + Alu SINE Alu 236 295 -7 23 0 0 0 chr4 165843772 165843795 -36484552 + AT_rich Low_complexity Low_complexity 1 23 0 574 270 174 26 chr4 165844107 165844377 -36483970 - MLT1H LTR MaLR -227 322 13 6165 204 35 8 chr4 165845456 165846568 -36481779 - L1 LINE L1 -1933 4213 3049 1748 81 0 4 chr4 165846568 165846804 -36481543 - L1PA7 LINE L1 -2 6152 5918 6165 204 35 8 chr4 165846804 165847189 -36481158 - L1 LINE L1 -3097 3049 2676 1098 135 17 0 chr4 165847179 165847357 -36480990 + L1MA9 LINE L1 5796 5976 -336 * 480 117 58 0 chr4 165848942 165849045 -36479302 + Charlie5 DNA MER1_type 2448 2556 -56 42093 38 23 2 chr4 165849063 165855089 -36473258 - L1PA3 LINE L1 0 6155 3 9705 157 51 14 chr4 165856246 165858001 -36470346 - Tigger1 DNA MER2_type -589 1829 10 400 343 124 14 chr4 165858250 165858533 -36469814 - MLT1J LTR MaLR -197 314 1 1005 266 55 33 chr4 165858564 165858963 -36469384 - MLT1H1 LTR MaLR -2 553 146 2326 245 49 20 chr4 165859824 165860582 -36467765 - L1MC4a LINE L1 -2 7806 7027 1676 176 147 24 chr4 165860605 165860986 -36467361 - MSTA LTR MaLR 0 428 1 9736 137 6 35 chr4 165860986 165862612 -36465735 - MSTA-int LTR MaLR 0 1580 3 582 194 142 26 chr4 165862614 165862769 -36465578 - MSTA LTR MaLR 0 428 256 1880 188 87 10 chr4 165862780 165863169 -36465178 + MER61C LTR ERV1 16 434 0 1307 173 98 12 chr4 165863169 165863422 -36464925 - MSTA LTR MaLR -153 275 1 346 306 26 87 chr4 165864956 165865042 -36463305 - MIR SINE MIR 0 262 172 786 151 0 43 chr4 165865042 165865215 -36463132 - FLAM_A SINE Alu 0 133 1 346 306 26 87 chr4 165865215 165865357 -36462990 - MIR SINE MIR -90 172 48 322 292 64 52 chr4 165866001 165866268 -36462079 + MERVL LTR ERVL 5067 5336 -149 386 309 98 35 chr4 165867222 165867507 -36460840 + MLT1I LTR MaLR 107 409 0 2649 179 99 88 chr4 165869294 165869920 -36458427 - L1MA10 LINE L1 0 6334 5683 2330 183 0 20 chr4 165869920 165870362 -36457985 + Tigger2a DNA MER2_type 2 434 0 2649 179 99 88 chr4 165870362 165870900 -36457447 - L1MA10 LINE L1 -651 5683 5153 623 190 0 0 chr4 165871004 165871125 -36457222 - L1MD3 LINE L1 -14 7981 7861 313 200 29 8 chr4 165871098 165871193 -36457154 - L1M4 LINE L1 -618 5556 5457 * 507 187 0 28 chr4 165871209 165871316 -36457031 - L1MC4 LINE L1 -476 7566 7463 272 111 0 111 chr4 165871323 165871413 -36456934 - L1MD3 LINE L1 -146 7849 7770 410 154 0 0 chr4 165871413 165871478 -36456869 + Alu SINE Alu 235 299 -13 291 370 51 0 chr4 165871637 165871775 -36456572 + MIR SINE MIR 3 147 -115 212 252 259 65 chr4 165871819 165871958 -36456389 + MIR SINE MIR 32 197 -65 679 227 57 34 chr4 165871964 165872140 -36456207 - MLT1D LTR MaLR -120 385 206 1402 247 29 73 chr4 165872838 165873434 -36454913 - MLT2B3 LTR ERVL -8 534 1 24 0 0 0 chr4 165873499 165873523 -36454824 + AT_rich Low_complexity Low_complexity 1 24 0 30 59 0 0 chr4 165873865 165873916 -36454431 + AT_rich Low_complexity Low_complexity 1 51 0 848 254 91 46 chr4 165874211 165874562 -36453785 - L2 LINE L2 -4 3309 2943 422 336 0 0 chr4 165874673 165874795 -36453552 + L2 LINE L2 3180 3301 -12 285 271 143 64 chr4 165874994 165875260 -36453087 - MLT1H LTR MaLR -259 290 4 424 286 60 0 chr4 165875733 165875866 -36452481 - L2 LINE L2 -4 3309 3169 2294 137 55 24 chr4 165877241 165877656 -36450691 + MSTC LTR MaLR 1 428 0 1974 255 111 79 chr4 165878748 165879310 -36449037 + L1MC4 LINE L1 6520 7062 -980 538 39 26 0 chr4 165879310 165879387 -36448960 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 1974 255 111 79 chr4 165879387 165880297 -36448050 + L1MC4 LINE L1 7062 8040 -2 247 379 56 15 chr4 165880487 165880685 -36447662 + MIR SINE MIR 30 235 -27 1689 169 18 39 chr4 165880864 165881195 -36447152 + Tigger1 DNA MER2_type 2094 2417 -1 27 0 0 0 chr4 165881367 165881394 -36446953 + AT_rich Low_complexity Low_complexity 1 27 0 279 216 0 0 chr4 165881485 165881536 -36446811 + AluJ/monomer SINE Alu 239 289 -12 784 260 6 6 chr4 165882061 165882234 -36446113 + AluJo SINE Alu 120 292 -20 224 267 133 0 chr4 165883277 165883367 -36444980 + L2 LINE L2 3192 3293 -20 2216 77 0 55 chr4 165883376 165883688 -36444659 + AluSc SINE Alu 1 295 -14 22 35 0 0 chr4 165883748 165883777 -36444570 + AT_rich Low_complexity Low_complexity 1 29 0 953 236 34 0 chr4 165883830 165884038 -36444309 - ERVL LTR ERVL -1207 4557 4343 * 1750 294 60 19 chr4 165884035 165884653 -36443694 - ERVL LTR ERVL -2319 3445 2803 5936 169 15 21 chr4 165884665 165886925 -36441422 - L1PB1 LINE L1 -5 6146 3898 1838 184 20 75 chr4 165887057 165887552 -36440795 - L1MA10 LINE L1 -13 6321 5854 981 266 40 27 chr4 165887549 165887997 -36440350 - L1M4c LINE L1 -3489 3155 2702 * 4287 267 61 48 chr4 165888009 165889691 -36438656 - L1M4c LINE L1 -4187 2638 773 395 37 0 19 chr4 165889691 165889745 -36438602 + (TG)n Simple_repeat Simple_repeat 2 54 0 4287 267 61 48 chr4 165889745 165890506 -36437841 - L1M4c LINE L1 -6052 773 24 289 304 0 29 chr4 165890554 165890656 -36437691 - L1MDa LINE L1 -6408 132 34 882 94 8 0 chr4 165892618 165892745 -36435602 - L1P3 LINE L1 -567 5605 5478 257 49 24 0 chr4 165892741 165892782 -36435565 + L1PA8 LINE L1 6126 6167 -5 * 184 300 33 0 chr4 165892907 165892967 -36435380 - L2 LINE L2 -69 3203 3142 505 145 36 0 chr4 165893353 165893436 -36434911 + Tigger5 DNA MER2_type 2238 2323 0 1059 278 122 4 chr4 165896445 165896960 -36431387 - MER114 LTR ERV -70 578 3 6813 75 2 1 chr4 165897059 165898154 -36430193 + L1PA7 LINE L1 5056 6151 -3 3825 80 0 4 chr4 165898199 165898712 -36429635 - MER9 LTR ERVK 0 511 1 529 335 32 72 chr4 165899887 165900388 -36427959 - L1 LINE L1 -1055 5091 4611 222 156 0 0 chr4 165902237 165902282 -36426065 + (CTCA)n Simple_repeat Simple_repeat 3 47 0 186 43 0 0 chr4 165903531 165903554 -36424793 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 2230 94 3 0 chr4 165903741 165904029 -36424318 + AluSp SINE Alu 1 289 -24 868 221 67 14 chr4 165904126 165904334 -36424013 - MER20 DNA MER1_type 0 219 1 367 244 51 68 chr4 165904390 165904566 -36423781 - MER5B DNA MER1_type -1 177 5 107 63 0 0 chr4 165905493 165905684 -36422663 + AT_rich Low_complexity Low_complexity 1 191 0 3359 198 24 72 chr4 165905852 165906870 -36421477 + LTR5 LTR ERVK 1 969 0 22 70 0 0 chr4 165907680 165907723 -36420624 + AT_rich Low_complexity Low_complexity 1 43 0 1576 196 0 29 chr4 165908626 165908937 -36419410 - AluJb SINE Alu -10 302 1 399 246 113 39 chr4 165909630 165909833 -36418514 + L2 LINE L2 3094 3311 -2 21 36 0 0 chr4 165910120 165910148 -36418199 + AT_rich Low_complexity Low_complexity 1 28 0 1296 261 60 66 chr4 165911191 165911693 -36416654 - MLT1J LTR MaLR -12 499 1 2102 110 7 3 chr4 165911844 165912145 -36416202 - AluSg SINE Alu -8 302 1 1514 224 79 18 chr4 165912197 165912640 -36415707 - L1MD3 LINE L1 -9 7986 7517 324 0 0 0 chr4 165913857 165913893 -36414454 + (CA)n Simple_repeat Simple_repeat 2 37 0 239 272 165 29 chr4 165913924 165914027 -36414320 + L2 LINE L2 3197 3313 0 25 83 0 0 chr4 165915478 165915538 -36412809 + AT_rich Low_complexity Low_complexity 1 60 0 550 276 118 27 chr4 165915666 165915887 -36412460 - MIR SINE MIR -1 261 21 21 36 0 0 chr4 165915962 165915990 -36412357 + AT_rich Low_complexity Low_complexity 1 28 0 200 132 26 0 chr4 165916174 165916212 -36412135 + A-rich Low_complexity Low_complexity 3 41 0 2797 93 62 5 chr4 165916286 165916704 -36411643 - MLT2A1 LTR ERVL 0 444 3 1622 70 0 17 chr4 165916706 165916936 -36411411 - HERVL-A1 LTR ERVL 0 5654 5429 * 19955 71 8 0 chr4 165916919 165919459 -36408888 - HERVL-A1 LTR ERVL -3096 2558 1 271 137 78 0 chr4 165919459 165919510 -36408837 - MLT2A1 LTR ERVL 0 453 399 25 51 0 0 chr4 165919510 165919549 -36408798 + AT_rich Low_complexity Low_complexity 1 39 0 2801 98 25 8 chr4 165919549 165919947 -36408400 - MLT2A1 LTR ERVL -39 405 1 1999 164 45 19 chr4 165921012 165921390 -36406957 - MER61D LTR ERV1 0 501 114 21 0 0 0 chr4 165921539 165921560 -36406787 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr4 165921884 165921917 -36406430 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr4 165921981 165922004 -36406343 + AT_rich Low_complexity Low_complexity 1 23 0 2478 70 0 3 chr4 165923783 165924095 -36404252 - AluY SINE Alu 0 311 1 1749 111 16 0 chr4 165926227 165926479 -36401868 + AluSx SINE Alu 24 279 -33 208 121 0 0 chr4 165927985 165928018 -36400329 + (TG)n Simple_repeat Simple_repeat 2 34 0 321 131 16 16 chr4 165928147 165928208 -36400139 + MLT1I LTR MaLR 349 409 0 38 0 0 0 chr4 165928620 165928658 -36399689 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr4 165929110 165929141 -36399206 + AT_rich Low_complexity Low_complexity 1 31 0 2063 189 34 39 chr4 165929574 165930082 -36398265 - MLT1D LTR MaLR 0 505 1 30 93 0 0 chr4 165930137 165930223 -36398124 + AT_rich Low_complexity Low_complexity 1 86 0 594 220 55 22 chr4 165930512 165930694 -36397653 - MER53 DNA DNA -1 188 1 238 277 50 17 chr4 165930890 165931009 -36397338 + L1M LINE L1 5296 5418 -2390 877 205 5 11 chr4 165931252 165931437 -36396910 - AluJo SINE Alu -126 186 3 241 282 30 38 chr4 165932094 165932225 -36396122 + L2 LINE L2 3115 3244 -69 21 0 0 0 chr4 165933228 165933249 -36395098 + AT_rich Low_complexity Low_complexity 1 21 0 2205 114 0 0 chr4 165933581 165933888 -36394459 - AluY SINE Alu -4 307 1 2106 97 16 3 chr4 165934071 165934379 -36393968 - L1PA11 LINE L1 -4 6170 5859 1538 183 3 30 chr4 165936721 165937016 -36391331 + AluJb SINE Alu 6 292 -20 342 0 0 0 chr4 165937016 165937054 -36391293 + (CA)n Simple_repeat Simple_repeat 2 39 0 1500 230 49 51 chr4 165937146 165937693 -36390654 + LTR55 LTR ERV 1 546 -2 3891 196 58 20 chr4 165938125 165939806 -36388541 - L1MB1 LINE L1 0 6168 4360 3675 101 35 0 chr4 165939806 165940353 -36387994 - L1PA13 LINE L1 0 6163 5598 3269 50 0 0 chr4 165940353 165940757 -36387590 - L1P LINE L1 -2449 3697 3294 230 105 26 0 chr4 165940753 165940791 -36387556 + L1P2 LINE L1 5664 5702 -452 * 1029 196 51 0 chr4 165940898 165940985 -36387362 - L1MB1 LINE L1 -1800 4346 4265 276 53 0 0 chr4 165940985 165941023 -36387324 + (TG)n Simple_repeat Simple_repeat 1 38 0 1029 196 51 0 chr4 165941023 165941149 -36387198 - L1MB1 LINE L1 -1881 4265 4122 1518 202 3 26 chr4 165941161 165941468 -36386879 - AluJo SINE Alu -12 300 1 6160 202 21 31 chr4 165943178 165944695 -36383652 + L1 LINE L1 2793 4294 -1852 702 326 60 4 chr4 165945212 165945445 -36382902 - MIR SINE MIR -1 261 16 307 311 47 19 chr4 165945773 165945879 -36382468 + L3 LINE CR1 1407 1515 -62 355 223 21 21 chr4 165945946 165946040 -36382307 - MIR SINE MIR -101 161 68 326 354 91 18 chr4 165946393 165946678 -36381669 + LTR67 LTR ERVL 251 556 -1 25 0 0 0 chr4 165947367 165947392 -36380955 + AT_rich Low_complexity Low_complexity 1 25 0 696 199 125 125 chr4 165947525 165947886 -36380461 - MLT1A1 LTR MaLR -4 361 1 23 0 0 0 chr4 165947944 165947967 -36380380 + AT_rich Low_complexity Low_complexity 1 23 0 835 215 31 10 chr4 165948549 165948744 -36379603 - MLT1C LTR MaLR 0 467 269 290 149 0 0 chr4 165948744 165948791 -36379556 - MER41B LTR ERV1 0 635 589 3373 139 7 30 chr4 165948891 165949272 -36379075 - MER41B LTR ERV1 -78 557 192 4977 85 30 0 chr4 165949272 165949969 -36378378 - L1PA11 LINE L1 0 6174 5457 3373 139 7 30 chr4 165949969 165950157 -36378190 - MER41B LTR ERV1 -443 192 1 732 193 117 50 chr4 165950170 165950409 -36377938 - MLT1C LTR MaLR -210 257 3 399 372 4 2 chr4 165950453 165950616 -36377731 - MIR3 SINE MIR -19 189 46 396 40 0 0 chr4 165950617 165950667 -36377680 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 2112 123 0 7 chr4 165950679 165950980 -36377367 - AluSq SINE Alu -14 299 1 334 317 138 6 chr4 165951097 165951264 -36377083 - MIR SINE MIR -16 246 58 1249 205 87 38 chr4 165951620 165951908 -36376439 - AluJo SINE Alu 0 302 1 2069 161 102 8 chr4 165952323 165952714 -36375633 - MSTA LTR MaLR 0 428 1 528 264 58 11 chr4 165952926 165953100 -36375247 - MIR SINE MIR -23 239 58 606 318 108 20 chr4 165953134 165953543 -36374804 - L2 LINE L2 -1143 2171 1727 410 295 128 4 chr4 165953591 165953821 -36374526 - MLT1C LTR MaLR -21 484 192 291 206 49 29 chr4 165953821 165953923 -36374424 + L1MA8 LINE L1 6073 6176 -115 2066 116 10 13 chr4 165954042 165954353 -36373994 + AluSx SINE Alu 1 310 -2 1851 57 16 12 chr4 165954427 165954673 -36373674 + L1PA7 LINE L1 5906 6152 -2 200 86 29 0 chr4 165954770 165954805 -36373542 + (CA)n Simple_repeat Simple_repeat 2 37 0 24 0 0 0 chr4 165954949 165954973 -36373374 + AT_rich Low_complexity Low_complexity 1 24 0 1778 143 36 0 chr4 165955006 165955307 -36373040 - AluSx SINE Alu 0 312 1 23 0 0 0 chr4 165955424 165955447 -36372900 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr4 165956022 165956042 -36372305 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 188 180 0 20 chr4 165956864 165956914 -36371433 + CT-rich Low_complexity Low_complexity 2 50 0 280 375 57 0 chr4 165956925 165957117 -36371230 + L2 LINE L2 2212 2414 -900 188 250 0 0 chr4 165957322 165957366 -36370981 + MER5B DNA MER1_type 1 44 -134 227 214 0 0 chr4 165958307 165958349 -36369998 + 5S rRNA rRNA 1 42 -79 25 65 0 0 chr4 165958431 165958477 -36369870 + AT_rich Low_complexity Low_complexity 1 46 0 188 216 20 0 chr4 165958532 165958583 -36369764 + (TA)n Simple_repeat Simple_repeat 1 52 0 895 80 80 0 chr4 165958625 165958750 -36369597 - MER85 DNA T2_type -4 135 1 2462 58 3 0 chr4 165958842 165959152 -36369195 + AluY SINE Alu 1 311 0 402 141 200 0 chr4 165959196 165959281 -36369066 - MLT2C1 LTR ERVL -90 307 206 290 288 8 40 chr4 165959297 165959422 -36368925 + CT-rich Low_complexity Low_complexity 5 125 0 2018 122 3 0 chr4 165960230 165960518 -36367829 - AluSp SINE Alu -24 289 1 219 69 0 0 chr4 165961502 165961531 -36366816 + (CA)n Simple_repeat Simple_repeat 2 30 0 255 176 54 0 chr4 165961997 165962071 -36366276 + A-rich Low_complexity Low_complexity 4 81 0 37 62 0 0 chr4 165962181 165962246 -36366101 + AT_rich Low_complexity Low_complexity 1 65 0 1954 231 82 7 chr4 165962263 165962714 -36365633 - MLT1D LTR MaLR 0 505 21 232 285 15 102 chr4 165963050 165963187 -36365160 + LTR33 LTR ERVL 1 125 -396 314 268 113 30 chr4 165963299 165963467 -36364880 + LTR33 LTR ERVL 328 509 -12 2273 109 3 3 chr4 165964576 165964888 -36363459 + AluSx SINE Alu 1 312 0 1561 246 39 29 chr4 165965537 165966126 -36362221 + L1M4 LINE L1 969 1563 -4979 801 298 83 22 chr4 165966148 165966595 -36361752 - L1MC4 LINE L1 -375 7667 7194 340 207 84 34 chr4 165966598 165966777 -36361570 + Zaphod DNA AcHobo 685 872 -3159 472 262 118 0 chr4 165966892 165967079 -36361268 + Zaphod DNA AcHobo 3605 3813 -218 883 171 0 0 chr4 165967118 165967264 -36361083 - L1PA16 LINE L1 -20 6146 6001 702 253 21 0 chr4 165967275 165967461 -36360886 + Zaphod DNA AcHobo 3842 4031 0 300 133 0 5 chr4 165970207 165970263 -36358084 + Alu SINE Alu 253 300 -2 267 266 133 9 chr4 165970614 165970756 -36357591 - L1ME3A LINE L1 -217 5947 5790 639 318 56 49 chr4 165971252 165972251 -36356096 - L1MEd LINE L1 -4762 1548 513 486 169 12 0 chr4 165972676 165972759 -36355588 + MLT1C LTR MaLR 1 84 -383 1129 309 19 7 chr4 165972786 165973197 -36355150 + L1ME LINE L1 5294 5709 -453 552 190 155 28 chr4 165973189 165973331 -36355016 + L1MB8 LINE L1 6010 6169 -9 * 257 0 0 29 chr4 165973340 165973374 -36354973 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 190 276 26 118 chr4 165973374 165973517 -36354830 + MIR3 SINE MIR 26 156 -52 22 35 0 0 chr4 165974307 165974336 -36354011 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 165974644 165974673 -36353674 + AT_rich Low_complexity Low_complexity 1 29 0 545 306 55 32 chr4 165974862 165975172 -36353175 - L1ME3A LINE L1 -15 6155 5839 27 62 0 0 chr4 165975189 165975237 -36353110 + AT_rich Low_complexity Low_complexity 1 48 0 219 316 93 36 chr4 165976258 165976397 -36351950 + MIR SINE MIR 56 202 -60 747 280 62 16 chr4 165976664 165976921 -36351426 + LTR40b LTR ERVL 156 424 -38 2324 169 12 37 chr4 165976982 165977413 -36350934 - MSTC LTR MaLR -6 422 3 2003 202 10 0 chr4 165978058 165978444 -36349903 - MLT1B LTR MaLR 0 390 1 1714 202 14 19 chr4 165978603 165978969 -36349378 + MLT1A1 LTR MaLR 2 365 0 28 48 0 0 chr4 165979551 165979593 -36348754 + AT_rich Low_complexity Low_complexity 1 42 0 801 206 42 6 chr4 165979807 165979972 -36348375 + MLT1A2 LTR MaLR 4 174 -200 668 240 9 4 chr4 165980052 165980232 -36348115 + MLT1A2 LTR MaLR 211 374 0 1584 170 24 6 chr4 165980963 165981293 -36347054 - L1MA4A LINE L1 -3 6300 5965 300 333 68 61 chr4 165982058 165982205 -36346142 + L2 LINE L2 3121 3268 -4 237 309 123 0 chr4 165983648 165983729 -36344618 - MIR SINE MIR -51 211 121 2058 117 0 0 chr4 165984061 165984343 -36344004 + AluSx SINE Alu 1 282 -30 188 309 140 44 chr4 165984384 165984520 -36343827 + MIR SINE MIR 114 262 0 1101 176 12 136 chr4 165984535 165984865 -36343482 - MLT1A1 LTR MaLR -48 317 29 389 211 11 11 chr4 165984888 165984983 -36343364 - L1MB4 LINE L1 -37 6143 6049 1389 254 151 23 chr4 165985568 165986144 -36342203 + LTR50 LTR ERVL 2 651 -144 900 173 71 0 chr4 165986144 165986312 -36342035 + MER68 LTR ERV1 1 180 -382 1873 223 38 5 chr4 165986376 165986770 -36341577 + MER68 LTR ERV1 156 562 0 269 146 18 18 chr4 165986805 165986860 -36341487 + LTR50 LTR ERVL 705 759 -36 465 157 0 0 chr4 165986992 165987107 -36341240 + (TA)n Simple_repeat Simple_repeat 1 115 0 307 260 0 42 chr4 165987109 165987205 -36341142 - L1MC4 LINE L1 -1339 6703 6612 * 496 152 0 34 chr4 165987166 165987380 -36340967 + (TA)n Simple_repeat Simple_repeat 1 206 0 327 227 10 62 chr4 165987433 165987530 -36340817 + L1MC4 LINE L1 6612 6703 -1339 1078 114 24 0 chr4 165988272 165988438 -36339909 + AluSq SINE Alu 144 313 0 203 364 93 0 chr4 165989971 165990089 -36338258 + MIR3 SINE MIR 53 181 -27 22 56 0 0 chr4 165990612 165990648 -36337699 + AT_rich Low_complexity Low_complexity 1 36 0 503 188 131 6 chr4 165991053 165991213 -36337134 + L2 LINE L2 2716 2895 -419 328 361 15 23 chr4 165991443 165991576 -36336771 + L2 LINE L2 3134 3265 -7 525 327 42 23 chr4 165991647 165991861 -36336486 - MIR SINE MIR -40 222 5 2181 114 0 19 chr4 165992320 165992636 -36335711 - AluSg SINE Alu 0 310 1 25 31 0 0 chr4 165992638 165992670 -36335677 + AT_rich Low_complexity Low_complexity 1 32 0 726 195 0 0 chr4 165992842 165992970 -36335377 - FLAM_C SINE Alu -15 128 1 229 221 128 23 chr4 165992981 165993067 -36335280 + MIR SINE MIR 130 224 -38 4192 56 56 12 chr4 165994597 165995574 -36332773 + MER11A LTR ERVK 4 1266 0 226 333 57 16 chr4 165997294 165997417 -36330930 + L2 LINE L2 3169 3296 -17 24 32 0 0 chr4 165998210 165998241 -36330106 + AT_rich Low_complexity Low_complexity 1 31 0 300 304 115 14 chr4 165999543 165999691 -36328656 - MIR SINE MIR -52 210 48 189 367 76 0 chr4 165999805 165999884 -36328463 + MIR SINE MIR 63 147 -61 357 329 175 27 chr4 166001164 166001565 -36326782 - L2 LINE L2 -1 3312 2853 353 318 71 31 chr4 166001566 166001890 -36326457 - L1M4 LINE L1 -3336 2810 2474 1610 158 84 6 chr4 166001909 166002232 -36326115 - L1 LINE L1 -1463 4683 4336 21 0 0 0 chr4 166002877 166002898 -36325449 + AT_rich Low_complexity Low_complexity 1 21 0 3360 197 21 35 chr4 166003370 166004074 -36324273 + MER54A LTR ERVL 16 901 0 202 205 0 0 chr4 166004177 166004216 -36324131 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 342 394 33 6 chr4 166004444 166004624 -36323723 + MER5A DNA MER1_type 4 188 -1 21 0 0 0 chr4 166004696 166004717 -36323630 + AT_rich Low_complexity Low_complexity 1 21 0 296 264 24 56 chr4 166005694 166005819 -36322528 + HAL1 LINE L1 98 218 -2289 662 314 22 4 chr4 166005882 166006111 -36322236 - L1MC4 LINE L1 -1064 6978 6746 23 54 0 0 chr4 166006669 166006706 -36321641 + AT_rich Low_complexity Low_complexity 1 37 0 8074 48 13 0 chr4 166006778 166007732 -36320615 + LTR5 LTR ERVK 1 966 -3 305 316 52 28 chr4 166007832 166008123 -36320224 + L1ME4a LINE L1 5566 5863 -258 21 0 0 0 chr4 166008138 166008159 -36320188 + AT_rich Low_complexity Low_complexity 1 21 0 498 315 165 5 chr4 166009342 166009542 -36318805 + MIR SINE MIR 4 235 -27 2236 60 3 0 chr4 166010009 166010291 -36318056 + AluY SINE Alu 21 303 -8 26 0 0 0 chr4 166010359 166010385 -36317962 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr4 166010541 166010561 -36317786 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 2134 199 97 22 chr4 166011103 166011647 -36316700 + L1MDa LINE L1 1674 2267 -4273 1959 134 10 13 chr4 166011647 166011961 -36316386 - AluSq SINE Alu 0 313 1 2134 199 97 22 chr4 166011961 166012005 -36316342 + L1MDa LINE L1 2267 2306 -4234 266 289 44 0 chr4 166012004 166012090 -36316257 + L1MD2 LINE L1 6047 6141 -218 * 907 208 87 52 chr4 166012090 166012321 -36316026 + MER8 DNA MER2_type 1 239 0 266 289 44 0 chr4 166012321 166012348 -36315999 + L1MD2 LINE L1 6141 6165 -194 * 451 269 34 0 chr4 166012332 166012481 -36315866 + L1MD3 LINE L1 7832 7985 -10 22 35 0 0 chr4 166012563 166012592 -36315755 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 166012610 166012631 -36315716 + AT_rich Low_complexity Low_complexity 1 21 0 688 243 107 16 chr4 166012869 166013112 -36315235 - L1MD2 LINE L1 -10 6349 6085 1302 160 32 21 chr4 166013150 166013595 -36314752 + LTR54 LTR ERV1 1 510 0 332 246 55 45 chr4 166014767 166014877 -36313470 + MIR3 SINE MIR 82 192 -16 2735 155 34 16 chr4 166014877 166015380 -36312967 - MER41E LTR ERV1 0 512 1 565 76 13 0 chr4 166015854 166015933 -36312414 + MADE1 DNA Mariner 1 80 0 388 250 11 11 chr4 166015938 166016026 -36312321 + MER58 DNA MER1_type 199 286 -2134 1254 216 6 85 chr4 166019284 166019526 -36308821 - MLT1A2 LTR MaLR 0 374 169 2241 108 3 0 chr4 166019526 166019832 -36308515 + AluSp SINE Alu 1 307 -6 1254 216 6 85 chr4 166019832 166019955 -36308392 - MLT1A2 LTR MaLR -205 169 38 42080 35 22 5 chr4 166021897 166027929 -36300418 + L1PA2 LINE L1 16 6152 -3 2576 49 0 0 chr4 166029027 166029335 -36299012 - AluY SINE Alu -3 308 1 24 53 0 0 chr4 166029625 166029663 -36298684 + AT_rich Low_complexity Low_complexity 1 38 0 2407 154 18 27 chr4 166030319 166030461 -36297886 + MER65A LTR ERV1 1 143 -302 2181 138 22 14 chr4 166030461 166030822 -36297525 - THE1B LTR MaLR 0 364 1 2407 154 18 27 chr4 166030822 166031128 -36297219 + MER65A LTR ERV1 143 445 0 585 280 44 31 chr4 166031369 166031594 -36296753 + MLT1I LTR MaLR 5 232 -177 236 205 77 13 chr4 166031643 166031721 -36296626 + MLT1J2 LTR MaLR 362 444 -6 21 0 0 0 chr4 166032914 166032935 -36295412 + AT_rich Low_complexity Low_complexity 1 21 0 1979 276 26 12 chr4 166033168 166033743 -36294604 - MER119 DNA MER1_type 0 583 1 673 196 57 13 chr4 166033758 166033916 -36294431 - MER3 DNA MER1_type -42 167 3 927 263 65 4 chr4 166033927 166034189 -36294158 - L2 LINE L2 -798 2516 2239 558 188 86 0 chr4 166034196 166034313 -36294034 - MIR SINE MIR -26 236 110 1357 196 55 55 chr4 166034386 166034749 -36293598 - MLT1A1 LTR MaLR 0 365 3 23 54 0 0 chr4 166035147 166035184 -36293163 + AT_rich Low_complexity Low_complexity 1 37 0 583 263 123 33 chr4 166035279 166035522 -36292825 - L1ME3A LINE L1 -73 6097 5833 245 255 0 0 chr4 166035847 166035898 -36292449 - MLT1F-int LTR MaLR -564 807 757 951 293 24 22 chr4 166036104 166036588 -36291759 - MLT1F-int LTR MaLR -765 606 5 725 246 60 30 chr4 166036592 166036778 -36291569 - MLT1F LTR MaLR 0 542 345 2089 101 0 4 chr4 166036778 166037078 -36291269 - AluSg1 SINE Alu 0 303 5 725 246 60 30 chr4 166037078 166037122 -36291225 - MLT1F LTR MaLR -197 345 304 207 0 0 0 chr4 166037689 166037712 -36290635 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 21 71 0 0 chr4 166038761 166038803 -36289544 + AT_rich Low_complexity Low_complexity 1 42 0 863 200 43 34 chr4 166039011 166039246 -36289101 - MER96B DNA MER1_type? -180 237 1 4047 123 38 71 chr4 166040206 166041018 -36287329 - LTR1 LTR ERV1 0 785 1 2694 191 34 56 chr4 166042078 166042919 -36285428 - LTR1 LTR ERV1 0 785 3 1652 203 43 6 chr4 166043245 166043595 -36284752 - MLT1A1 LTR MaLR -2 363 1 27 92 0 0 chr4 166043618 166043694 -36284653 + AT_rich Low_complexity Low_complexity 1 76 0 1381 114 32 0 chr4 166043739 166043959 -36284388 - L1P4 LINE L1 -651 5510 5284 2057 85 37 4 chr4 166044488 166044785 -36283562 - AluSq SINE Alu 0 308 3 22 0 0 0 chr4 166045162 166045184 -36283163 + AT_rich Low_complexity Low_complexity 1 22 0 213 65 0 0 chr4 166045951 166045982 -36282365 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 426 330 54 58 chr4 166049444 166049705 -36278642 - MIR SINE MIR 0 262 3 313 366 149 40 chr4 166049749 166050738 -36277609 + L2 LINE L2 1701 2820 -494 940 252 23 0 chr4 166050738 166050956 -36277391 - MER58A DNA MER1_type -1 223 1 313 366 149 40 chr4 166050956 166051054 -36277293 + L2 LINE L2 2820 2906 -408 1150 88 0 0 chr4 166051064 166051211 -36277136 - AluSc SINE Alu -7 302 156 273 357 14 56 chr4 166051215 166051358 -36276989 + L2 LINE L2 2924 3060 -212 246 192 0 0 chr4 166052259 166052311 -36276036 + (TATG)n Simple_repeat Simple_repeat 1 52 0 197 299 137 8 chr4 166052359 166052476 -36275871 - MIR SINE MIR -113 149 18 360 152 0 0 chr4 166052730 166052796 -36275551 + (TG)n Simple_repeat Simple_repeat 1 66 0 293 140 18 0 chr4 166052814 166052871 -36275476 + (TA)n Simple_repeat Simple_repeat 2 59 0 670 252 83 55 chr4 166053171 166053389 -36274958 - MIR SINE MIR -37 225 2 262 258 16 0 chr4 166054780 166054842 -36273505 - MER69 DNA AcHobo -2 2524 2462 1827 117 20 3 chr4 166055408 166055707 -36272640 + L1MA9 LINE L1 5793 6096 -216 249 119 0 0 chr4 166055714 166055756 -36272591 + (CA)n Simple_repeat Simple_repeat 1 42 0 658 153 28 56 chr4 166055759 166055903 -36272444 + L1MA9 LINE L1 6172 6311 -1 1553 119 0 0 chr4 166056495 166056713 -36271634 - AluSg/x SINE Alu -4 308 91 509 125 0 0 chr4 166056768 166056840 -36271507 - AluS SINE Alu -239 74 3 1664 122 48 19 chr4 166059066 166059337 -36269010 + AluY SINE Alu 19 297 -14 25 31 0 0 chr4 166109845 166109877 -36218470 + AT_rich Low_complexity Low_complexity 1 32 0 1518 137 0 21 chr4 166109915 166110148 -36218199 + AluSx SINE Alu 1 228 -84 237 119 0 0 chr4 166110164 166110206 -36218141 + (CA)n Simple_repeat Simple_repeat 1 42 0 726 270 69 54 chr4 166110557 166110994 -36217353 - MER57B LTR ERV1 0 434 1 275 217 11 43 chr4 166113280 166113372 -36214975 + T-rich Low_complexity Low_complexity 1 89 0 186 43 0 0 chr4 166113900 166113923 -36214424 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 1886 132 0 0 chr4 166113923 166114204 -36214143 - AluSg SINE Alu -27 283 3 365 299 54 84 chr4 166114552 166114738 -36213609 + MER102b DNA MER1_type 49 224 -1204 1618 190 29 29 chr4 166114738 166114979 -36213368 - MER7A DNA MER2_type -2692 346 105 2339 68 3 0 chr4 166114979 166115275 -36213072 + AluY SINE Alu 1 297 -14 1618 190 29 29 chr4 166115275 166115381 -36212966 - MER7A DNA MER2_type -2932 106 1 365 299 54 84 chr4 166115381 166115492 -36212855 + MER102b DNA MER1_type 224 337 -4 23 54 0 0 chr4 166115513 166115550 -36212797 + AT_rich Low_complexity Low_complexity 1 37 0 4207 180 37 35 chr4 166116205 166117128 -36211219 - L1MA10 LINE L1 -22 6312 5388 4825 102 0 0 chr4 166117153 166117822 -36210525 - L1PA8A LINE L1 -13 6118 5450 4703 208 28 12 chr4 166117824 166118936 -36209411 - L1P LINE L1 -4072 2074 945 2691 238 16 7 chr4 166118940 166119624 -36208723 - L1MA10 LINE L1 -749 5397 4708 22 35 0 0 chr4 166121025 166121054 -36207293 + AT_rich Low_complexity Low_complexity 1 29 0 1291 77 0 0 chr4 166121055 166121225 -36207122 - L1MA1 LINE L1 -9 6293 6124 244 210 0 32 chr4 166121313 166121345 -36207002 + (TA)n Simple_repeat Simple_repeat 2 33 -28 234 0 0 0 chr4 166121345 166121371 -36206976 + (CA)n Simple_repeat Simple_repeat 1 26 0 244 210 0 32 chr4 166121371 166121400 -36206947 + (TA)n Simple_repeat Simple_repeat 33 61 0 218 195 0 0 chr4 166122133 166122174 -36206173 + GA-rich Low_complexity Low_complexity 2 42 0 363 336 78 45 chr4 166123415 166123772 -36204575 + MLT1K LTR MaLR 165 533 -55 2252 77 0 46 chr4 166123993 166124319 -36204028 + AluY SINE Alu 1 311 0 270 329 29 29 chr4 166126359 166126496 -36201851 + MER5A DNA MER1_type 53 189 0 250 159 29 14 chr4 166127821 166127890 -36200457 + CT-rich Low_complexity Low_complexity 2 71 0 312 300 128 22 chr4 166128473 166128700 -36199647 + MIR SINE MIR 2 252 -10 223 349 23 12 chr4 166129085 166129171 -36199176 - L2 LINE L2 -6 3307 3221 1312 286 75 19 chr4 166129290 166130070 -36198277 + L2 LINE L2 2490 3313 0 224 275 69 30 chr4 166130128 166130259 -36198088 - L2 LINE L2 -338 2976 2841 25 31 0 0 chr4 166131633 166131665 -36196682 + AT_rich Low_complexity Low_complexity 1 32 0 429 260 156 7 chr4 166131686 166131840 -36196507 - MIR SINE MIR -72 190 14 243 295 147 0 chr4 166133120 166133215 -36195132 - L2 LINE L2 -1 3271 3163 391 271 12 41 chr4 166133577 166133747 -36194600 + MER103 DNA DNA 2 166 0 246 287 261 21 chr4 166133810 166133998 -36194349 + L3 LINE CR1 287 519 -1058 1003 239 29 0 chr4 166134176 166134381 -36193966 - MER58A DNA MER1_type -12 212 2 748 312 157 39 chr4 166134419 166135011 -36193336 + L3 LINE CR1 771 1465 -112 1419 181 128 15 chr4 166135011 166135348 -36192999 - THE1C LTR MaLR 0 375 1 748 312 157 39 chr4 166135348 166135477 -36192870 + L3 LINE CR1 1465 1577 0 642 287 43 122 chr4 166137474 166137941 -36190406 - MLT1J2 LTR MaLR 0 450 21 252 0 0 0 chr4 166138888 166138916 -36189431 + (CA)n Simple_repeat Simple_repeat 2 29 0 1728 139 4 8 chr4 166139455 166139714 -36188633 - AluJo SINE Alu -54 258 1 182 351 72 52 chr4 166139715 166140119 -36188228 + L2 LINE L2 2062 2473 -841 183 313 0 90 chr4 166140466 166140600 -36187747 + L2 LINE L2 2918 3039 -233 198 71 0 0 chr4 166143844 166143872 -36184475 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 241 347 51 15 chr4 166143917 166144113 -36184234 + L2 LINE L2 2150 2352 -962 277 222 0 0 chr4 166146326 166146380 -36181967 + AluJ/monomer SINE Alu 1 54 -249 2180 92 3 0 chr4 166146894 166147221 -36181126 + AluY SINE Alu 1 328 0 219 333 39 0 chr4 166147233 166147311 -36181036 + L2 LINE L2 2454 2534 -780 25 31 0 0 chr4 166147371 166147403 -36180944 + AT_rich Low_complexity Low_complexity 1 32 0 310 273 15 0 chr4 166148079 166148145 -36180202 + L2 LINE L2 3206 3272 0 1894 190 47 26 chr4 166148322 166148859 -36179488 - MLT2A2 LTR ERVL -1 553 2 977 298 101 57 chr4 166149352 166150303 -36178044 - L2 LINE L2 -1 3312 2285 1767 188 0 3 chr4 166152156 166152460 -36175887 + AluJb SINE Alu 3 305 -7 571 335 51 73 chr4 166152931 166153760 -36174587 + L2 LINE L2 2470 3271 -1 524 127 0 0 chr4 166154333 166154412 -36173935 - MADE1 DNA Mariner -1 79 1 387 0 0 0 chr4 166154412 166154455 -36173892 + (TA)n Simple_repeat Simple_repeat 2 44 0 511 304 115 0 chr4 166154595 166154786 -36173561 - MIR SINE MIR -2 260 48 2357 103 0 0 chr4 166155408 166155709 -36172638 - AluSg SINE Alu -9 301 1 2134 142 16 3 chr4 166156222 166156602 -36171745 - L1MB1 LINE L1 -3 6165 5781 208 209 23 0 chr4 166156608 166156651 -36171696 + (TA)n Simple_repeat Simple_repeat 2 45 0 467 136 32 96 chr4 166156662 166156787 -36171560 - THE1C LTR MaLR -74 301 185 8707 179 26 2 chr4 166156787 166158765 -36169582 - L1P5 LINE L1 -625 5526 3510 * 13726 200 16 40 chr4 166158755 166160927 -36167420 - L1 LINE L1 -1014 5834 3610 2022 100 3 50 chr4 166160927 166161261 -36167086 - AluSq SINE Alu 0 320 1 13726 200 16 40 chr4 166161261 166165066 -36163281 - L1 LINE L1 -3238 3610 3 4135 238 101 30 chr4 166165067 166165129 -36163218 - L1 LINE L1 -2389 5176 5120 198 0 0 0 chr4 166165129 166165151 -36163196 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 4135 238 101 30 chr4 166165151 166166504 -36161843 - L1 LINE L1 -2445 5120 3865 216 0 0 0 chr4 166166504 166166528 -36161819 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4135 238 101 30 chr4 166166528 166166603 -36161744 - L1 LINE L1 -3700 3865 3797 1551 172 192 8 chr4 166166603 166166963 -36161384 - MSTA LTR MaLR -2 426 1 4135 238 101 30 chr4 166166963 166167503 -36160844 - L1 LINE L1 -3768 3797 2916 27 29 0 0 chr4 166167848 166167882 -36160465 + AT_rich Low_complexity Low_complexity 1 34 0 317 183 73 0 chr4 166168016 166168098 -36160249 - MER53 DNA DNA -96 93 6 257 331 206 19 chr4 166168256 166168416 -36159931 - MIR SINE MIR -17 245 56 2363 91 3 0 chr4 166168418 166168725 -36159622 + AluSp SINE Alu 1 308 -5 202 379 53 0 chr4 166168902 166168997 -36159350 - L2 LINE L2 -5 3267 3168 22 0 0 0 chr4 166169057 166169079 -36159268 + AT_rich Low_complexity Low_complexity 1 22 0 32 43 0 0 chr4 166169415 166169461 -36158886 + AT_rich Low_complexity Low_complexity 1 46 0 1499 164 25 0 chr4 166171382 166171626 -36156721 + AluJo SINE Alu 47 296 -16 570 302 37 9 chr4 166171865 166172080 -36156267 + Charlie2 DNA MER1_type 123 343 -2519 1127 200 45 124 chr4 166172161 166172741 -36155606 + Charlie2 DNA MER1_type 2328 2861 -1 650 87 0 0 chr4 166173313 166173405 -36154942 + AluS SINE Alu 1 92 -221 284 321 15 37 chr4 166173939 166174073 -36154274 + L2 LINE L2 3183 3313 0 22 70 0 0 chr4 166175062 166175105 -36153242 + AT_rich Low_complexity Low_complexity 1 43 0 243 0 0 0 chr4 166175198 166175225 -36153122 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 204 163 0 0 chr4 166175597 166175640 -36152707 + CT-rich Low_complexity Low_complexity 2 44 0 33 25 0 0 chr4 166175932 166175972 -36152375 + AT_rich Low_complexity Low_complexity 1 40 0 3609 158 32 37 chr4 166177018 166177100 -36151247 - MER50 LTR ERV1 -23 711 630 225 0 0 0 chr4 166177100 166177125 -36151222 + (GA)n Simple_repeat Simple_repeat 2 26 0 3609 158 32 37 chr4 166177125 166177749 -36150598 - MER50 LTR ERV1 -104 630 8 2165 113 10 0 chr4 166178017 166178326 -36150021 - AluSp SINE Alu -1 312 1 242 293 40 20 chr4 166178350 166178500 -36149847 + MLT1H LTR MaLR 73 225 -324 259 308 107 30 chr4 166178989 166179158 -36149189 + MIR SINE MIR 53 234 -28 453 238 30 0 chr4 166179178 166179279 -36149068 + MER3 DNA MER1_type 7 110 -99 655 218 0 0 chr4 166179524 166179648 -36148699 + FRAM SINE Alu 40 163 -13 329 260 117 0 chr4 166179680 166179807 -36148540 + L1ME LINE L1 2341 2475 -3951 3315 148 25 7 chr4 166179812 166180379 -36147968 + L1PA16 LINE L1 5581 6157 -9 930 264 126 16 chr4 166180407 166181198 -36147149 + L1ME LINE L1 4957 5819 -625 456 150 165 0 chr4 166181213 166181346 -36147001 + L1ME LINE L1 5899 6053 -391 291 371 19 14 chr4 166181415 166181628 -36146719 - LTR16A LTR ERVL -76 374 161 236 345 44 0 chr4 166181706 166181819 -36146528 - LTR16A LTR ERVL -323 127 10 672 241 27 40 chr4 166181854 166182078 -36146269 + L1ME3A LINE L1 5943 6163 -7 1218 52 0 0 chr4 166182477 166182631 -36145716 - L1PA5 LINE L1 -2 6152 5999 184 322 143 53 chr4 166183245 166183869 -36144478 - L2 LINE L2 -1060 2254 1575 204 131 33 82 chr4 166184480 166184541 -36143806 - MIR SINE MIR -135 127 70 23 33 0 0 chr4 166185036 166185066 -36143281 + AT_rich Low_complexity Low_complexity 1 30 0 407 389 22 6 chr4 166185603 166185783 -36142564 - MER5A DNA MER1_type 0 189 7 1129 320 111 8 chr4 166186038 166186650 -36141697 + Charlie7 DNA MER1_type 7 681 -1931 26 0 0 0 chr4 166186668 166186694 -36141653 + AT_rich Low_complexity Low_complexity 1 26 0 190 259 65 37 chr4 166186906 166187014 -36141333 + L2 LINE L2 2871 2981 -291 185 286 66 55 chr4 166187210 166187301 -36141046 + L2 LINE L2 3137 3228 -44 608 123 9 0 chr4 166188218 166188324 -36140023 - L1MA4 LINE L1 -1 6299 6193 224 109 0 22 chr4 166191181 166191227 -36137120 + (TA)n Simple_repeat Simple_repeat 2 46 0 2244 100 17 0 chr4 166191230 166191529 -36136818 - AluY SINE Alu -7 304 1 21 0 0 0 chr4 166191566 166191587 -36136760 + AT_rich Low_complexity Low_complexity 1 21 0 188 0 74 0 chr4 166191587 166191614 -36136733 + (TTATA)n Simple_repeat Simple_repeat 1 29 0 273 57 0 0 chr4 166191703 166191738 -36136609 + (TAA)n Simple_repeat Simple_repeat 3 37 0 456 301 61 15 chr4 166191742 166191958 -36136389 - L1ME LINE L1 -400 5762 5538 366 311 192 10 chr4 166192348 166192660 -36135687 + L2 LINE L2 2210 2578 -736 248 324 98 44 chr4 166192679 166192883 -36135464 - MIR SINE MIR -34 228 14 1354 146 50 0 chr4 166193059 166193278 -36135069 + MER30 DNA MER1_type 1 230 0 218 204 74 0 chr4 166193726 166193780 -36134567 - MIR SINE MIR -10 252 195 4051 167 43 80 chr4 166194138 166194888 -36133459 + L1MA9 LINE L1 5011 5692 -620 2032 182 42 31 chr4 166194888 166195312 -36133035 + MSTB1 LTR MaLR 4 432 0 4051 167 43 80 chr4 166195312 166195906 -36132441 + L1MA9 LINE L1 5692 6306 -6 883 251 114 14 chr4 166196000 166196049 -36132298 - L1ME LINE L1 -1474 4672 4629 246 62 0 0 chr4 166196049 166196081 -36132266 + (CA)n Simple_repeat Simple_repeat 1 32 0 883 251 114 14 chr4 166196081 166196328 -36132019 - L1ME LINE L1 -1517 4629 4408 231 36 0 0 chr4 166196328 166196356 -36131991 + (CA)n Simple_repeat Simple_repeat 1 28 0 883 251 114 14 chr4 166196356 166196504 -36131843 - L1ME LINE L1 -1738 4408 4182 533 289 52 13 chr4 166196530 166196835 -36131512 - L1ME LINE L1 -3699 2447 2131 189 0 0 0 chr4 166196970 166196991 -36131356 + (GA)n Simple_repeat Simple_repeat 2 22 0 556 278 79 52 chr4 166197490 166197742 -36130605 + MIR SINE MIR 4 262 0 303 28 0 0 chr4 166197743 166197779 -36130568 + (CAT)n Simple_repeat Simple_repeat 3 38 0 4183 180 26 10 chr4 166198286 166199196 -36129151 - L1MA7 LINE L1 -172 6119 5195 193 313 127 22 chr4 166199781 166199915 -36128432 - MIR SINE MIR -14 248 101 1131 267 35 26 chr4 166200668 166201016 -36127331 + MLT1E LTR MaLR 228 578 -15 186 143 0 0 chr4 166201122 166201157 -36127190 + (CA)n Simple_repeat Simple_repeat 2 36 0 593 294 126 4 chr4 166201160 166201391 -36126956 + MIR SINE MIR 1 259 -3 536 110 0 11 chr4 166205711 166205802 -36122545 + (GGAA)n Simple_repeat Simple_repeat 2 91 0 3302 73 0 7 chr4 166206091 166206542 -36121805 + LTR7 LTR ERV1 1 448 -2 20394 89 10 29 chr4 166206544 166209595 -36118752 + HERVH LTR ERV1 1 2995 -4718 974 120 7 0 chr4 166209574 166209724 -36118623 + HERVH LTR ERV1 3140 3290 -4423 * 3347 119 0 6 chr4 166209714 166210219 -36118128 + HERVH LTR ERV1 3492 3993 -3720 4388 139 1 1 chr4 166210221 166210883 -36117464 + HERVH LTR ERV1 4488 5149 -2564 1361 131 18 14 chr4 166210880 166211102 -36117245 + HERVH LTR ERV1 5597 5819 -1894 * 2496 77 48 13 chr4 166211100 166211479 -36116868 + HERVH LTR ERV1 7322 7713 0 3481 53 0 7 chr4 166211479 166211930 -36116417 + LTR7 LTR ERV1 1 448 -2 516 95 0 0 chr4 166212180 166212254 -36116093 + MADE1 DNA Mariner 7 80 0 232 307 11 11 chr4 166214297 166214385 -36113962 + LTR67 LTR ERVL 47 134 -423 254 337 124 17 chr4 166214598 166214776 -36113571 + LTR67 LTR ERVL 360 556 -1 1844 288 46 25 chr4 166215120 166215686 -36112661 + MLT1E LTR MaLR 15 592 -1 216 0 0 0 chr4 166215715 166215739 -36112608 + (T)n Simple_repeat Simple_repeat 1 24 0 26 64 0 0 chr4 166217054 166217101 -36111246 + AT_rich Low_complexity Low_complexity 1 47 0 272 291 205 24 chr4 166218670 166218880 -36109467 + MIR SINE MIR 12 259 -3 188 292 112 0 chr4 166218933 166219022 -36109325 - L2 LINE L2 -8 3305 3207 2007 123 34 22 chr4 166219049 166219407 -36108940 - L1MA6 LINE L1 0 6300 5939 1451 83 0 0 chr4 166219459 166219651 -36108696 + L1PA5 LINE L1 5961 6152 -2 1757 178 31 19 chr4 166220090 166220449 -36107898 + MLT1A1 LTR MaLR 3 365 0 1192 141 180 7 chr4 166222314 166222621 -36105726 - MER46B DNA MER2_type 0 236 1 302 262 222 8 chr4 166222727 166222853 -36105494 + MLT1H LTR MaLR 3 155 -394 233 264 25 74 chr4 166223062 166223093 -36105254 + MLT1H LTR MaLR 428 459 -90 264 30 0 0 chr4 166223093 166223126 -36105221 + (CAA)n Simple_repeat Simple_repeat 1 33 0 233 264 25 74 chr4 166223126 166223215 -36105132 + MLT1H LTR MaLR 459 542 -7 800 321 74 50 chr4 166223238 166223780 -36104567 - LTR67 LTR ERVL 0 557 3 288 256 26 0 chr4 166224266 166224344 -36104003 - ERVL LTR ERVL -467 5297 5218 293 233 139 0 chr4 166224649 166224735 -36103612 - MER58 DNA MER1_type 0 2420 2323 216 0 0 0 chr4 166224796 166224820 -36103527 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 355 325 83 64 chr4 166224998 166225417 -36102930 - LTR67 LTR ERVL -44 513 87 230 269 0 0 chr4 166225858 166225951 -36102396 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 1059 340 125 46 chr4 166227132 166227735 -36100612 - L2 LINE L2 0 3272 2718 1932 128 38 0 chr4 166227735 166228047 -36100300 + AluSc SINE Alu 1 309 0 1059 340 125 46 chr4 166228047 166228798 -36099549 - L2 LINE L2 -554 2718 1802 22 35 0 0 chr4 166228798 166228827 -36099520 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 166228927 166228948 -36099399 + AT_rich Low_complexity Low_complexity 1 21 0 241 301 133 18 chr4 166229051 166229164 -36099183 - MIR3 SINE MIR -79 129 4 900 307 30 13 chr4 166230661 166230964 -36097383 - LTR16A LTR ERVL 0 450 143 423 315 153 39 chr4 166232901 166233260 -36095087 - MLT1K LTR MaLR -187 401 2 1669 179 11 3 chr4 166233543 166233828 -36094519 + AluJb SINE Alu 3 289 -23 2122 143 14 20 chr4 166233990 166234347 -36094000 - THE1B LTR MaLR -9 355 1 2023 198 80 18 chr4 166235279 166235729 -36092618 + LTR53 LTR ERVL 1 478 -41 198 260 20 137 chr4 166236195 166236341 -36092006 - MIR SINE MIR -63 199 71 336 280 65 32 chr4 166236733 166236928 -36091419 + LTR16A1 LTR ERVL 292 457 0 244 267 71 86 chr4 166237193 166237403 -36090944 - MIR SINE MIR -42 220 14 201 74 0 0 chr4 166238479 166238506 -36089841 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 568 277 136 21 chr4 166238507 166238742 -36089605 - L2 LINE L2 -906 2408 2147 27 29 0 0 chr4 166240847 166240881 -36087466 + AT_rich Low_complexity Low_complexity 1 34 0 243 79 0 0 chr4 166241579 166241617 -36086730 + (TC)n Simple_repeat Simple_repeat 1 38 0 430 202 151 105 chr4 166244856 166245094 -36083253 + MIR SINE MIR 14 262 0 362 265 118 73 chr4 166245132 166245377 -36082970 - L2 LINE L2 -9 3304 3049 234 298 0 0 chr4 166246766 166246823 -36081524 + (CA)n Simple_repeat Simple_repeat 2 58 0 1110 274 21 29 chr4 166248143 166248526 -36079821 - L1ME3A LINE L1 -1 6169 5790 282 283 58 0 chr4 166248521 166248641 -36079706 - L1MEc LINE L1 -2635 3580 3454 * 841 265 85 18 chr4 166248649 166249203 -36079144 - L1MEc LINE L1 -2795 3420 2830 1596 285 55 13 chr4 166249236 166249710 -36078637 + LTR40a LTR ERVL 1 494 -25 909 283 27 51 chr4 166249713 166250127 -36078220 + L1M3d LINE L1 1 404 -5487 2184 166 78 2 chr4 166250260 166250707 -36077640 + L1MB1 LINE L1 5688 6168 0 633 206 22 0 chr4 166250737 166250873 -36077474 + L1MD2 LINE L1 5813 5951 -408 518 314 56 15 chr4 166250869 166251206 -36077141 - L1MEc LINE L1 -3475 2740 2390 * 1479 218 52 6 chr4 166251236 166251585 -36076762 - MLT1A1 LTR MaLR 0 365 1 702 212 71 6 chr4 166251591 166251761 -36076586 + MER58C DNA MER1_type 35 215 0 267 254 82 0 chr4 166251843 166251965 -36076382 - L1MEc LINE L1 -4094 2302 2171 777 254 136 3 chr4 166252151 166252474 -36075873 - MLT1B LTR MaLR -5 385 20 276 229 141 57 chr4 166252609 166252801 -36075546 - L1MEc LINE L1 -4564 1832 1625 2632 156 47 6 chr4 166252898 166253393 -36074954 - L1MA4 LINE L1 -1 6299 5785 375 326 45 21 chr4 166253408 166253782 -36074565 - L1MEc LINE L1 -4755 1641 1259 308 321 68 14 chr4 166254032 166254253 -36074094 - L1MEc LINE L1 -5258 1138 906 1429 218 25 74 chr4 166254354 166254878 -36073469 + L1MC4 LINE L1 7027 7524 -518 255 292 51 74 chr4 166254897 166255113 -36073234 - L2 LINE L2 -747 2567 2357 801 261 290 8 chr4 166256517 166256900 -36071447 - LTR50 LTR ERVL -304 491 1 367 279 206 30 chr4 166257472 166257845 -36070502 + MLT1H LTR MaLR 109 547 -2 2159 114 0 0 chr4 166258691 166258989 -36069358 + AluSx SINE Alu 1 298 -14 297 196 76 43 chr4 166260134 166260226 -36068121 - MLT1J2 LTR MaLR -284 166 72 312 27 0 0 chr4 166261401 166261438 -36066909 + (TG)n Simple_repeat Simple_repeat 1 37 0 5275 201 76 19 chr4 166263686 166265037 -36063310 + Charlie1a DNA MER1_type 27 1455 0 25 0 0 0 chr4 166266054 166266079 -36062268 + AT_rich Low_complexity Low_complexity 1 25 0 699 24 0 0 chr4 166266261 166266346 -36062001 + AluY SINE Alu 5 89 -222 1879 134 3 3 chr4 166266446 166266729 -36061618 - AluSx SINE Alu -29 283 1 210 354 63 0 chr4 166266755 166266834 -36061513 + MIR SINE MIR 49 132 -130 24 53 0 0 chr4 166267462 166267500 -36060847 + AT_rich Low_complexity Low_complexity 1 38 0 1419 242 80 34 chr4 166268043 166268655 -36059692 + Charlie2 DNA MER1_type 1856 2495 -367 1772 74 0 0 chr4 166268658 166268875 -36059472 - AluY SINE Alu -11 300 84 535 243 56 32 chr4 166268876 166269127 -36059220 + Charlie2 DNA MER1_type 2606 2862 0 279 0 0 0 chr4 166269974 166270005 -36058342 + (TG)n Simple_repeat Simple_repeat 2 32 0 2154 108 10 0 chr4 166271703 166272008 -36056339 + AluSx SINE Alu 2 309 -3 27 0 0 0 chr4 166272612 166272639 -36055708 + AT_rich Low_complexity Low_complexity 1 27 0 1981 141 21 0 chr4 166272639 166272929 -36055418 + AluSx SINE Alu 2 297 -15 676 278 94 38 chr4 166273003 166273291 -36055056 - L2 LINE L2 0 3313 3010 1901 135 7 0 chr4 166273979 166274261 -36054086 + AluSg SINE Alu 27 310 0 1600 175 31 14 chr4 166275375 166275667 -36052680 + AluJb SINE Alu 1 297 -15 1068 234 173 24 chr4 166275778 166276149 -36052198 - LTR40c LTR ERVL -38 427 2 198 71 0 0 chr4 166276227 166276255 -36052092 + (TC)n Simple_repeat Simple_repeat 1 28 0 180 111 0 0 chr4 166276268 166276295 -36052052 + (CA)n Simple_repeat Simple_repeat 1 27 0 299 231 154 0 chr4 166277432 166277549 -36050798 - L2 LINE L2 -47 3266 3132 349 341 62 19 chr4 166277889 166278097 -36050250 - MIR SINE MIR 0 262 46 2201 210 38 0 chr4 166278293 166278740 -36049607 - MLT1C LTR MaLR -3 464 1 24 32 0 0 chr4 166279964 166279995 -36048352 + AT_rich Low_complexity Low_complexity 1 31 0 22 88 0 0 chr4 166280300 166280357 -36047990 + AT_rich Low_complexity Low_complexity 1 57 0 23 33 0 0 chr4 166280595 166280625 -36047722 + AT_rich Low_complexity Low_complexity 1 30 0 1962 122 14 0 chr4 166280657 166280978 -36047369 - AluSx SINE Alu 0 325 1 24 32 0 0 chr4 166281712 166281743 -36046604 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 166281915 166281936 -36046411 + AT_rich Low_complexity Low_complexity 1 21 0 1147 225 4 19 chr4 166282139 166282397 -36045950 + AluJo SINE Alu 36 289 -23 41 0 0 0 chr4 166282552 166282593 -36045754 + AT_rich Low_complexity Low_complexity 1 41 0 4345 153 7 5 chr4 166282604 166283362 -36044985 + L1MA4 LINE L1 5540 6298 -2 413 145 0 0 chr4 166283694 166283763 -36044584 - L1MA9 LINE L1 -191 6121 6053 1020 136 0 86 chr4 166283763 166283980 -36044367 + L1MA9 LINE L1 6111 6312 0 22 0 0 0 chr4 166283980 166284002 -36044345 + AT_rich Low_complexity Low_complexity 1 22 0 1609 209 71 0 chr4 166284108 166284433 -36043914 - MER7A DNA MER2_type 0 346 1 26 88 0 0 chr4 166285002 166285070 -36043277 + AT_rich Low_complexity Low_complexity 1 68 0 219 36 0 0 chr4 166285536 166285564 -36042783 + (TG)n Simple_repeat Simple_repeat 1 28 0 296 0 0 0 chr4 166286716 166286749 -36041598 + U2 snRNA snRNA 1 33 -155 749 247 20 31 chr4 166286994 166287249 -36041098 - L1MA9 LINE L1 -46 6266 6015 1380 88 62 0 chr4 166287259 166287452 -36040895 - MER30 DNA MER1_type -25 205 1 27 81 0 0 chr4 166287766 166287828 -36040519 + AT_rich Low_complexity Low_complexity 1 62 0 528 147 20 10 chr4 166287895 166287997 -36040350 - Charlie1 DNA MER1_type -250 2511 2409 198 0 0 0 chr4 166287999 166288021 -36040326 + (TG)n Simple_repeat Simple_repeat 2 23 0 1884 151 3 0 chr4 166288299 166288583 -36039764 + AluSx SINE Alu 1 285 -27 336 269 81 44 chr4 166288674 166288834 -36039513 + MER5B DNA MER1_type 11 176 -2 668 293 86 9 chr4 166290028 166290260 -36038087 - LTR16A LTR ERVL 0 450 201 4926 38 2 0 chr4 166290260 166290870 -36037477 + L1P LINE L1 2555 3165 -2981 2993 160 18 18 chr4 166291888 166292439 -36035908 - L1MA7 LINE L1 -207 6084 5534 228 164 18 0 chr4 166292441 166292496 -36035851 + L1MA7 LINE L1 6230 6285 -6 456 228 55 31 chr4 166292623 166292750 -36035597 - MIR SINE MIR -6 256 127 590 193 0 26 chr4 166292810 166292924 -36035423 - AluSq/x SINE Alu -181 131 21 687 272 161 25 chr4 166293599 166293915 -36034432 + L2 LINE L2 1890 2248 -1066 487 240 137 29 chr4 166293960 166294135 -36034212 + L2 LINE L2 2452 2645 -669 1238 98 6 0 chr4 166294422 166294595 -36033752 + THE1C LTR MaLR 202 375 0 6427 171 26 38 chr4 166294595 166295915 -36032432 + THE1C-int LTR MaLR 1 1305 -275 809 157 0 20 chr4 166296055 166296208 -36032139 + AluSp/q SINE Alu 164 313 0 1684 174 23 7 chr4 166296222 166296521 -36031826 + AluJo SINE Alu 1 304 -8 477 50 0 0 chr4 166296733 166296793 -36031554 + (TTC)n Simple_repeat Simple_repeat 2 61 0 1547 188 7 11 chr4 166296793 166297120 -36031227 - AluJb SINE Alu 0 326 1 555 179 0 0 chr4 166297953 166298059 -36030288 + (TG)n Simple_repeat Simple_repeat 2 107 0 1022 207 28 9 chr4 166298189 166298402 -36029945 - MER8 DNA MER2_type -2 237 21 404 279 77 55 chr4 166299246 166299429 -36028918 + MIR SINE MIR 51 237 -25 194 247 13 0 chr4 166299555 166299632 -36028715 + CT-rich Low_complexity Low_complexity 2 79 0 23 0 0 0 chr4 166300506 166300529 -36027818 + AT_rich Low_complexity Low_complexity 1 23 0 812 130 68 31 chr4 166300718 166300879 -36027468 + L1P4 LINE L1 5399 5565 -601 21 36 0 0 chr4 166300942 166300970 -36027377 + AT_rich Low_complexity Low_complexity 1 28 0 986 144 0 0 chr4 166302925 166303071 -36025276 + AluSc SINE Alu 135 280 -29 420 314 7 43 chr4 166303999 166304139 -36024208 + MLT1K LTR MaLR 137 271 -317 769 142 0 0 chr4 166304420 166304529 -36023818 + THE1C LTR MaLR 1 109 -266 2017 101 114 7 chr4 166304529 166304959 -36023388 - LTR14B LTR ERVK 0 608 18 1558 181 9 53 chr4 166305059 166305401 -36022946 + MLT1B LTR MaLR 64 390 0 925 327 72 50 chr4 166305526 166306381 -36021966 - ERVL LTR ERVL -1378 4386 3505 2018 93 4 0 chr4 166306381 166306639 -36021708 - AluSp SINE Alu -54 259 1 925 327 72 50 chr4 166306639 166306764 -36021583 - ERVL LTR ERVL -2259 3505 3384 1899 288 43 18 chr4 166306840 166308262 -36020085 - ERVL LTR ERVL -1906 3090 1597 354 367 0 7 chr4 166308326 166308473 -36019874 - ERVL LTR ERVL -3569 1427 1282 1383 283 95 28 chr4 166308473 166308955 -36019392 + MLT1G LTR MaLR 1 478 -117 306 296 45 8 chr4 166309225 166309357 -36018990 - ERVL LTR ERVL -3860 1136 1000 2069 105 3 34 chr4 166310185 166310481 -36017866 - AluSq SINE Alu -21 292 6 2279 92 0 0 chr4 166311120 166311415 -36016932 + AluY SINE Alu 1 295 -16 216 231 19 0 chr4 166311681 166311733 -36016614 + (CATA)n Simple_repeat Simple_repeat 3 55 0 244 129 0 65 chr4 166312577 166312639 -36015708 + (TATATG)n Simple_repeat Simple_repeat 5 62 0 180 254 95 16 chr4 166314018 166314081 -36014266 - L2 LINE L2 -1335 1979 1912 409 314 97 41 chr4 166314809 166315099 -36013248 + L2 LINE L2 2967 3272 0 686 189 0 70 chr4 166315311 166315424 -36012923 + FLAM_A SINE Alu 1 104 -198 2186 126 0 0 chr4 166315424 166315726 -36012621 - AluSg SINE Alu -8 302 1 686 189 0 70 chr4 166315726 166315755 -36012592 + FLAM_A SINE Alu 104 133 -169 1312 93 26 0 chr4 166316230 166316423 -36011924 - AluSp SINE Alu -2 311 114 442 245 85 57 chr4 166319362 166319574 -36008773 + L1ME LINE L1 5562 5779 -342 1959 103 7 68 chr4 166319772 166320082 -36008265 - AluSx SINE Alu -21 291 1 842 245 70 72 chr4 166320705 166321221 -36007126 - L2 LINE L2 -4 3309 2761 836 123 118 18 chr4 166321221 166321391 -36006956 - MER53 DNA DNA 0 189 3 842 245 70 72 chr4 166321391 166321528 -36006819 - L2 LINE L2 -552 2761 2625 1805 286 81 53 chr4 166321539 166322578 -36005769 - L2 LINE L2 -997 2317 1250 21 36 0 0 chr4 166324027 166324055 -36004292 + AT_rich Low_complexity Low_complexity 1 28 0 241 285 58 72 chr4 166324362 166324569 -36003778 - HAL1b LINE L1 -784 564 361 571 167 25 2 chr4 166324862 166325101 -36003246 + AluJ SINE Alu 5 306 -6 271 243 75 59 chr4 166325603 166325842 -36002505 - MER20B DNA MER1_type -16 767 525 877 298 54 52 chr4 166325925 166326372 -36001975 - MER20B DNA MER1_type -273 510 63 205 253 200 0 chr4 166327294 166327369 -36000978 - MIR3 SINE MIR -7 201 112 463 261 155 19 chr4 166329204 166329365 -35998982 - MIR SINE MIR -66 196 14 1255 112 0 0 chr4 166329388 166329557 -35998790 + AluSq SINE Alu 131 299 -14 660 237 58 12 chr4 166330613 166330786 -35997561 + MIR SINE MIR 38 218 -44 1487 238 83 19 chr4 166330859 166331292 -35997055 + MER63 DNA MER1_type 601 1061 0 267 339 26 35 chr4 166331333 166331448 -35996899 - MIR SINE MIR -118 144 31 344 370 57 15 chr4 166333062 166333324 -35995023 - L2 LINE L2 -557 2757 2485 7675 182 40 59 chr4 166334694 166336484 -35991863 + MER52A LTR ERV1 1 1755 0 266 344 99 8 chr4 166336595 166336726 -35991621 - MIR SINE MIR -109 153 11 799 260 114 61 chr4 166337038 166337399 -35990948 + LTR16A LTR ERVL 59 438 -12 623 151 0 50 chr4 166337807 166337926 -35990421 + L1PA16 LINE L1 6054 6166 0 235 247 39 65 chr4 166338652 166338729 -35989618 - MIR3 SINE MIR -36 172 98 449 310 70 15 chr4 166339520 166339720 -35988627 - MIR SINE MIR -2 260 50 22 0 0 0 chr4 166341954 166341976 -35986371 + AT_rich Low_complexity Low_complexity 1 22 0 2029 251 82 82 chr4 166341984 166342871 -35985476 + L1MDa LINE L1 18 904 -5636 992 209 5 5 chr4 166342904 166343095 -35985252 + AluSx SINE Alu 3 193 -119 3973 203 109 48 chr4 166343102 166344391 -35983956 + L1MDa LINE L1 1031 2398 -4142 475 316 38 24 chr4 166344390 166344599 -35983748 + L1MD2 LINE L1 5932 6143 -216 * 447 248 26 0 chr4 166344598 166344715 -35983632 + L1MD3 LINE L1 7832 7951 -44 * 2362 94 3 0 chr4 166345078 166345387 -35982960 - AluSp SINE Alu -3 310 1 250 243 40 40 chr4 166345747 166345821 -35982526 + L2 LINE L2 3231 3304 -9 212 232 0 29 chr4 166345846 166345915 -35982432 + GA-rich Low_complexity Low_complexity 2 68 0 25 51 0 0 chr4 166345929 166345968 -35982379 + AT_rich Low_complexity Low_complexity 1 39 0 966 303 87 12 chr4 166347488 166347891 -35980456 + LTR16A LTR ERVL 18 450 0 608 320 43 23 chr4 166348400 166348656 -35979691 - LTR16A1 LTR ERVL -26 431 171 360 152 0 0 chr4 166348659 166348725 -35979622 + (TG)n Simple_repeat Simple_repeat 2 67 0 207 0 0 0 chr4 166348859 166348882 -35979465 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1827 226 81 34 chr4 166349002 166349532 -35978815 + MLT1F1 LTR MaLR 13 567 0 272 298 119 30 chr4 166349845 166350013 -35978334 + MIR SINE MIR 11 193 -69 1164 289 75 25 chr4 166350013 166350604 -35977743 + MER20B DNA MER1_type 1 620 -163 632 307 11 34 chr4 166350743 166351007 -35977340 - MIR SINE MIR -4 258 1 5425 138 15 2 chr4 166352010 166352852 -35975495 - Tigger2 DNA MER2_type -1537 1181 329 2334 93 0 3 chr4 166353027 166353338 -35975009 + AluY SINE Alu 1 310 -1 470 350 5 49 chr4 166353352 166353575 -35974772 + MIR SINE MIR 6 218 -44 399 375 71 19 chr4 166353610 166353879 -35974468 + L3 LINE CR1 1288 1570 -7 252 345 35 0 chr4 166354533 166354620 -35973727 - L2 LINE L2 0 3272 3183 25 51 0 0 chr4 166354990 166355029 -35973318 + AT_rich Low_complexity Low_complexity 1 39 0 440 213 142 89 chr4 166356729 166356867 -35971480 - MER112 DNA MER1_type -12 248 92 261 0 0 0 chr4 166356867 166356896 -35971451 + (TA)n Simple_repeat Simple_repeat 2 30 0 440 213 142 89 chr4 166356896 166356982 -35971365 - MER112 DNA MER1_type -168 92 12 233 329 246 6 chr4 166357053 166357220 -35971127 - MIR SINE MIR -5 257 51 206 179 26 26 chr4 166357807 166357885 -35970462 + GA-rich Low_complexity Low_complexity 3 80 0 21 57 0 0 chr4 166357942 166357977 -35970370 + AT_rich Low_complexity Low_complexity 1 35 0 26 64 0 0 chr4 166359608 166359655 -35968692 + AT_rich Low_complexity Low_complexity 1 47 0 534 184 5 135 chr4 166359701 166359886 -35968461 + L1MD2 LINE L1 6182 6342 -17 229 316 179 12 chr4 166359963 166360131 -35968216 + MIR SINE MIR 66 261 -1 1706 126 21 164 chr4 166360274 166360289 -35968058 - MER57A LTR ERV1 0 403 387 2224 104 0 3 chr4 166360289 166360598 -35967749 + AluY SINE Alu 2 309 -2 1706 126 21 164 chr4 166360598 166360841 -35967506 - MER57A LTR ERV1 -16 387 111 1370 116 0 46 chr4 166360841 166361082 -35967265 + MER30 DNA MER1_type 1 230 0 1706 126 21 164 chr4 166361082 166361243 -35967104 - MER57A LTR ERV1 -292 111 -71 2064 96 0 7 chr4 166361243 166361523 -35966824 + AluSx SINE Alu 3 280 -32 253 0 0 51 chr4 166361526 166361565 -35966782 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1706 126 21 164 chr4 166361565 166361607 -35966740 - MER57A LTR ERV1 -354 49 3 23 0 0 0 chr4 166363495 166363518 -35964829 + AT_rich Low_complexity Low_complexity 1 23 0 3156 182 56 31 chr4 166364073 166364782 -35963565 + LTR8A LTR ERV1 1 727 0 2813 135 24 11 chr4 166365129 166365588 -35962759 + MER4C LTR ERV1 1 465 0 297 319 92 7 chr4 166365588 166365729 -35962618 + HAL1 LINE L1 105 257 -2250 357 82 0 0 chr4 166365875 166365924 -35962423 + (CA)n Simple_repeat Simple_repeat 2 50 0 300 200 56 22 chr4 166366077 166366167 -35962180 + HAL1 LINE L1 737 829 -1678 1362 185 55 0 chr4 166366341 166366633 -35961714 - Tigger2 DNA MER2_type -2410 308 1 2432 57 0 0 chr4 166366665 166366964 -35961383 + AluY SINE Alu 2 300 -11 205 301 0 14 chr4 166367026 166367099 -35961248 + (TG)n Simple_repeat Simple_repeat 1 72 0 34 42 0 0 chr4 166367583 166367631 -35960716 + AT_rich Low_complexity Low_complexity 1 48 0 246 224 164 26 chr4 166368105 166368257 -35960090 + L1ME LINE L1 5717 5889 -232 2132 141 0 0 chr4 166368377 166368689 -35959658 + AluSx SINE Alu 1 312 0 2305 79 0 13 chr4 166370348 166370652 -35957695 + AluY SINE Alu 1 300 -11 201 339 102 17 chr4 166371166 166371284 -35957063 - MIR3 SINE MIR -40 168 41 218 348 42 25 chr4 166371337 166371455 -35956892 - L2 LINE L2 -245 3027 2908 2028 137 7 10 chr4 166371702 166372009 -35956338 + AluSx SINE Alu 1 306 -6 201 317 122 46 chr4 166372094 166372422 -35955925 - L2 LINE L2 -807 2507 2155 277 245 151 9 chr4 166372738 166372844 -35955503 + L3 LINE CR1 817 937 -640 506 276 164 0 chr4 166372876 166373028 -35955319 - MER5A DNA MER1_type 0 189 13 279 330 10 10 chr4 166373040 166373140 -35955207 + L3 LINE CR1 962 1061 -516 210 290 0 58 chr4 166373428 166373497 -35954850 - MIR3 SINE MIR -17 191 127 182 233 17 0 chr4 166376875 166376935 -35951412 + GA-rich Low_complexity Low_complexity 2 62 0 26 82 0 0 chr4 166377075 166377136 -35951211 + AT_rich Low_complexity Low_complexity 1 61 0 1230 106 5 0 chr4 166377216 166377405 -35950942 - L1MA2 LINE L1 -2 6302 6113 361 281 84 10 chr4 166377406 166377609 -35950738 + HAL1b LINE L1 853 1070 -278 2162 130 19 17 chr4 166377735 166378097 -35950250 + THE1C LTR MaLR 1 363 -12 230 338 73 13 chr4 166378215 166378366 -35949981 - MLT1H LTR MaLR -292 257 98 3039 178 69 12 chr4 166378614 166379283 -35949064 - L1MB7 LINE L1 0 6184 5478 1977 213 88 9 chr4 166379260 166379814 -35948533 - L1MB7 LINE L1 -947 5199 4602 * 209 250 0 94 chr4 166380585 166380649 -35947698 - MIR3 SINE MIR -40 168 111 252 375 23 43 chr4 166381279 166381535 -35946812 - L2 LINE L2 -588 2726 2476 1314 221 40 23 chr4 166381560 166381908 -35946439 + MLT1A1 LTR MaLR 1 354 -11 225 0 0 0 chr4 166383214 166383239 -35945108 + (TG)n Simple_repeat Simple_repeat 2 26 0 21 57 0 0 chr4 166383362 166383397 -35944950 + AT_rich Low_complexity Low_complexity 1 35 0 308 214 67 11 chr4 166383421 166383510 -35944837 + MER103 DNA DNA 22 115 -51 189 0 0 0 chr4 166385964 166385985 -35942362 + (A)n Simple_repeat Simple_repeat 1 21 0 566 208 81 13 chr4 166386917 166387066 -35941281 - MIR SINE MIR -5 257 99 24 53 0 0 chr4 166388051 166388089 -35940258 + AT_rich Low_complexity Low_complexity 1 38 0 613 311 98 8 chr4 166388287 166388522 -35939825 - MIR SINE MIR -6 256 1 219 295 0 0 chr4 166389154 166389215 -35939132 - L3 LINE CR1 -367 1210 1150 27 62 0 0 chr4 166391535 166391583 -35936764 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr4 166394953 166394981 -35933366 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 166395832 166395853 -35932494 + AT_rich Low_complexity Low_complexity 1 21 0 301 197 268 36 chr4 166395889 166396169 -35932178 + L1M3 LINE L1 5217 5537 -634 252 384 67 35 chr4 166396322 166396663 -35931684 + L2 LINE L2 2547 2898 -416 191 250 0 0 chr4 166397069 166397113 -35931234 - L2 LINE L2 -9 3304 3261 376 344 27 27 chr4 166399037 166399220 -35929127 + MIR3 SINE MIR 20 202 -6 1849 176 23 30 chr4 166399607 166400000 -35928347 + MLT1B LTR MaLR 1 390 0 1976 143 3 7 chr4 166400111 166400419 -35927928 + AluSx SINE Alu 4 310 -2 1510 268 61 34 chr4 166400623 166401299 -35927048 + HAL1 LINE L1 1814 2507 0 249 33 0 0 chr4 166401762 166401792 -35926555 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 195 345 70 14 chr4 166401850 166401992 -35926355 + MER5A DNA MER1_type 34 183 -6 22 56 0 0 chr4 166404996 166405032 -35923315 + AT_rich Low_complexity Low_complexity 1 36 0 197 238 0 0 chr4 166405795 166405837 -35922510 - L2 LINE L2 -21 3251 3210 252 281 0 0 chr4 166407080 166407137 -35921210 - L2 LINE L2 -14 3299 3243 38 39 0 0 chr4 166407747 166407799 -35920548 + AT_rich Low_complexity Low_complexity 1 52 0 1483 271 66 35 chr4 166409321 166410082 -35918265 + MER20B DNA MER1_type 1 784 0 357 298 38 13 chr4 166410244 166410402 -35917945 + MIR SINE MIR 94 255 -7 254 169 104 26 chr4 166411340 166411417 -35916930 + Charlie8 DNA MER1_type 94 176 -2241 305 291 73 9 chr4 166411469 166411579 -35916768 + L2 LINE L2 3197 3313 0 329 327 16 52 chr4 166411827 166412075 -35916272 - L2 LINE L2 -1177 2137 1899 396 0 0 0 chr4 166412882 166412926 -35915421 + (CA)n Simple_repeat Simple_repeat 2 45 0 29 20 0 39 chr4 166414009 166414040 -35914307 + AT_rich Low_complexity Low_complexity 1 31 -18 538 244 66 54 chr4 166414040 166414298 -35914049 - MIR SINE MIR 0 262 2 29 20 0 39 chr4 166414298 166414317 -35914030 + AT_rich Low_complexity Low_complexity 31 49 0 21 82 0 0 chr4 166414468 166414517 -35913830 + AT_rich Low_complexity Low_complexity 1 49 0 424 259 70 90 chr4 166414752 166415107 -35913240 + L1M4 LINE L1 3139 3486 -2660 281 210 0 32 chr4 166415117 166415179 -35913168 + FLAM SINE Alu 57 116 -17 2286 97 0 0 chr4 166415335 166415633 -35912714 + AluSq SINE Alu 1 298 -15 729 163 7 30 chr4 166415784 166415919 -35912428 + Tigger1 DNA MER2_type 27 158 -2260 665 184 135 14 chr4 166415926 166416075 -35912272 - Tigger1 DNA MER2_type -1752 666 484 2363 32 63 0 chr4 166416075 166416360 -35911987 - AluY SINE Alu -8 303 1 665 184 135 14 chr4 166416360 166416417 -35911930 - Tigger1 DNA MER2_type -1934 484 435 9261 132 59 15 chr4 166416517 166418053 -35910294 + Tigger1 DNA MER2_type 816 2418 0 434 315 92 37 chr4 166418132 166418427 -35909920 + L1M4 LINE L1 3878 4188 -1958 408 71 0 0 chr4 166418580 166418636 -35909711 + (TG)n Simple_repeat Simple_repeat 1 56 0 1542 161 17 51 chr4 166418655 166418947 -35909400 - AluJo SINE Alu -22 290 9 1813 148 3 7 chr4 166418959 166419263 -35909084 - AluSx SINE Alu -9 303 1 349 256 133 0 chr4 166419270 166419360 -35908987 - L2 LINE L2 -773 2541 2440 1136 85 6 11 chr4 166419504 166419680 -35908667 + THE1C-int LTR MaLR 1406 1580 0 2464 115 5 24 chr4 166419680 166420020 -35908327 + THE1C LTR MaLR 1 335 -40 1887 158 10 7 chr4 166420020 166420323 -35908024 - AluSx SINE Alu -8 304 1 2464 115 5 24 chr4 166420323 166420364 -35907983 + THE1C LTR MaLR 335 375 0 1633 194 57 14 chr4 166421571 166421921 -35906426 + MLT1A1 LTR MaLR 1 365 0 1216 228 134 12 chr4 166422279 166422696 -35905651 + MER110A LTR ERV1 1 468 0 1010 269 125 48 chr4 166423107 166423933 -35904414 + L1ME LINE L1 2238 3202 -2944 1528 191 30 61 chr4 166423933 166424373 -35903974 + LTR37A LTR ERV1 1 426 0 1010 269 125 48 chr4 166424373 166424635 -35903712 + L1ME LINE L1 3202 3442 -2704 718 275 111 63 chr4 166424637 166425302 -35903045 + L1MC4 LINE L1 7208 7904 -138 575 265 11 0 chr4 166425455 166425636 -35902711 + L1MD3 LINE L1 6934 7116 -879 338 279 0 0 chr4 166425641 166425727 -35902620 + MLT1F1 LTR MaLR 45 130 -437 2340 193 35 8 chr4 166425743 166426260 -35902087 + L1MD3 LINE L1 7426 7956 -39 500 255 135 43 chr4 166426266 166426894 -35901453 + L1ME LINE L1 4648 5607 -555 237 338 21 14 chr4 166426963 166427108 -35901239 + L1ME LINE L1 5728 5873 -297 694 251 37 23 chr4 166427352 166427567 -35900780 + LTR40b LTR ERVL 245 462 0 23 0 0 0 chr4 166428498 166428521 -35899826 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 166429797 166429819 -35898528 + AT_rich Low_complexity Low_complexity 1 22 0 279 273 23 0 chr4 166429821 166429909 -35898438 + MER103 DNA DNA 64 153 -13 21 0 0 0 chr4 166430090 166430111 -35898236 + AT_rich Low_complexity Low_complexity 1 21 0 2253 59 42 0 chr4 166430188 166430477 -35897870 + AluYa5 SINE Alu 8 308 -3 216 67 0 0 chr4 166430509 166430539 -35897808 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1582 248 94 21 chr4 166431075 166431649 -35896698 + MLT1E3 LTR MaLR 1 624 0 24 0 0 0 chr4 166432178 166432202 -35896145 + AT_rich Low_complexity Low_complexity 1 24 0 1949 160 0 10 chr4 166432318 166432630 -35895717 + AluJb SINE Alu 3 311 -1 22 35 0 0 chr4 166434523 166434552 -35893795 + AT_rich Low_complexity Low_complexity 1 29 0 238 276 23 23 chr4 166436454 166436541 -35891806 + MLT1K LTR MaLR 485 571 -17 229 313 54 36 chr4 166440304 166440416 -35887931 - MIR SINE MIR -6 256 143 1624 134 36 0 chr4 166441240 166441493 -35886854 - AluSg SINE Alu -48 262 1 449 211 33 11 chr4 166442155 166442245 -35886102 + L2 LINE L2 3221 3312 -1 321 100 0 0 chr4 166443308 166443358 -35884989 + (CA)n Simple_repeat Simple_repeat 1 50 0 23 33 0 0 chr4 166443483 166443513 -35884834 + AT_rich Low_complexity Low_complexity 1 30 0 3063 52 0 0 chr4 166444082 166444465 -35883882 - L1PA4 LINE L1 -3 6152 5770 545 185 110 23 chr4 166444600 166444652 -35883695 - L1MA9 LINE L1 -116 6196 6150 216 67 0 0 chr4 166444652 166444682 -35883665 + (TG)n Simple_repeat Simple_repeat 2 31 0 545 185 110 23 chr4 166444682 166444802 -35883545 - L1MA9 LINE L1 -162 6150 6009 23 33 0 0 chr4 166445228 166445258 -35883089 + AT_rich Low_complexity Low_complexity 1 30 0 1070 146 6 0 chr4 166445999 166446164 -35882183 - AluSx SINE Alu -11 301 136 434 167 0 0 chr4 166446164 166446236 -35882111 - AluSx SINE Alu -241 72 1 2340 75 0 10 chr4 166447273 166447568 -35880779 + AluY SINE Alu 1 292 -19 23 0 0 0 chr4 166447991 166448014 -35880333 + AT_rich Low_complexity Low_complexity 1 23 0 1488 201 32 3 chr4 166450970 166451254 -35877093 + AluJo SINE Alu 1 292 -20 1550 211 0 10 chr4 166452827 166453139 -35875208 - AluJb SINE Alu -3 309 1 1617 123 143 0 chr4 166453757 166454001 -35874346 + AluSx SINE Alu 1 279 -33 401 282 99 8 chr4 166454514 166454666 -35873681 - MIR SINE MIR 0 262 99 1179 107 13 62 chr4 166455224 166455449 -35872898 - L1MA3 LINE L1 0 6305 6092 452 302 143 35 chr4 166455923 166456238 -35872109 + L2 LINE L2 2952 3300 -13 225 216 20 0 chr4 166456243 166456294 -35872053 + L2 LINE L2 3262 3313 0 1293 139 0 19 chr4 166456638 166456846 -35871501 - MER46A DNA MER2_type 0 236 33 233 353 88 0 chr4 166457085 166457187 -35871160 + MIR SINE MIR 34 144 -118 4812 142 50 7 chr4 166457960 166458796 -35869551 + Tigger1 DNA MER2_type 651 1522 -896 3974 175 12 35 chr4 166458797 166459529 -35868818 + Tigger1 DNA MER2_type 1635 2349 -69 2013 121 38 62 chr4 166459529 166459707 -35868640 + THE1B LTR MaLR 1 182 -182 1843 107 15 0 chr4 166459707 166459968 -35868379 + AluSx SINE Alu 36 300 -12 2013 121 38 62 chr4 166459968 166460162 -35868185 + THE1B LTR MaLR 182 364 0 3974 175 12 35 chr4 166460162 166460231 -35868116 + Tigger1 DNA MER2_type 2349 2418 0 2425 89 0 0 chr4 166460925 166461228 -35867119 + AluY SINE Alu 1 303 -8 2425 89 0 0 chr4 166461836 166462139 -35866208 + AluY SINE Alu 1 303 -8 273 57 0 0 chr4 166464183 166464218 -35864129 + (CA)n Simple_repeat Simple_repeat 1 35 0 1147 226 44 7 chr4 166464643 166464913 -35863434 + AluJo SINE Alu 1 280 -32 243 0 0 0 chr4 166464914 166464941 -35863406 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 556 262 102 21 chr4 166465844 166466031 -35862316 + MLT1L LTR MaLR 410 611 -4 1521 171 56 14 chr4 166466768 166467054 -35861293 + AluJb SINE Alu 3 300 -12 1274 177 24 4 chr4 166469969 166470218 -35858129 - MER7A DNA MER2_type 0 336 83 983 41 0 0 chr4 166470219 166470341 -35858006 + AluYa5/8 SINE Alu 188 309 -2 349 238 0 48 chr4 166470341 166470425 -35857922 - MER7A DNA MER2_type -267 79 2 238 245 276 0 chr4 166471108 166471206 -35857141 + MIR SINE MIR 44 168 -94 23 0 0 0 chr4 166471666 166471689 -35856658 + AT_rich Low_complexity Low_complexity 1 23 0 1346 162 114 26 chr4 166472365 166472516 -35855831 - AluJo SINE Alu -16 296 160 240 35 0 0 chr4 166472516 166472545 -35855802 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1346 162 114 26 chr4 166472545 166472665 -35855682 - AluJo SINE Alu -152 160 1 233 224 60 45 chr4 166474145 166474212 -35854135 + MER94 DNA DNA 2 69 -65 2320 95 3 0 chr4 166474380 166474675 -35853672 + AluSg SINE Alu 1 296 -14 22 0 0 0 chr4 166475226 166475248 -35853099 + AT_rich Low_complexity Low_complexity 1 22 0 291 300 77 35 chr4 166475312 166475482 -35852865 - MIR SINE MIR -7 255 79 642 169 65 0 chr4 166477900 166478024 -35850323 - MER2 DNA MER2_type -173 172 41 23 0 0 0 chr4 166478166 166478189 -35850158 + AT_rich Low_complexity Low_complexity 1 23 0 2103 127 0 0 chr4 166478193 166478477 -35849870 + AluSx SINE Alu 5 288 -24 419 313 21 0 chr4 166478481 166478625 -35849722 + L2 LINE L2 1869 2015 -1299 1698 155 32 11 chr4 166479218 166479496 -35848851 + AluJb SINE Alu 4 287 -25 615 121 0 0 chr4 166479525 166479624 -35848723 + (GGGA)n Simple_repeat Simple_repeat 3 101 0 205 217 101 93 chr4 166479748 166479877 -35848470 + MER5B DNA MER1_type 4 133 -45 243 0 0 0 chr4 166480252 166480279 -35848068 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1646 161 39 3 chr4 166480283 166480568 -35847779 - AluSx SINE Alu -17 295 1 198 316 34 51 chr4 166480589 166480766 -35847581 - L2 LINE L2 -968 2346 2173 301 325 25 0 chr4 166480880 166481000 -35847347 - L1MC4 LINE L1 0 8042 7920 291 204 46 5 chr4 166481286 166481358 -35846989 - L1MC/D LINE L1 -351 5813 5747 180 0 0 0 chr4 166481742 166481762 -35846585 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 252 0 0 0 chr4 166481761 166481789 -35846558 + (TG)n Simple_repeat Simple_repeat 2 29 0 224 216 0 20 chr4 166484582 166484633 -35843714 + G-rich Low_complexity Low_complexity 5 54 0 42 65 0 0 chr4 166484857 166484934 -35843413 + GC_rich Low_complexity Low_complexity 1 77 0 371 265 101 90 chr4 166485208 166485476 -35842871 - L1M2 LINE L1 -5927 922 652 539 199 50 43 chr4 166485837 166485978 -35842369 - L2 LINE L2 -3 3310 3169 360 0 0 0 chr4 166487194 166487234 -35841113 + (TG)n Simple_repeat Simple_repeat 2 41 0 192 152 0 0 chr4 166488156 166488189 -35840158 + (CA)n Simple_repeat Simple_repeat 2 34 0 504 0 0 0 chr4 166488337 166488393 -35839954 + (TA)n Simple_repeat Simple_repeat 2 57 0 287 342 43 12 chr4 166489034 166489195 -35839152 + MIR3 SINE MIR 32 197 -11 472 323 30 6 chr4 166492056 166492223 -35836124 - MIR SINE MIR -84 178 8 265 350 82 19 chr4 166492989 166493195 -35835152 + L2 LINE L2 2618 2836 -478 1714 162 20 14 chr4 166493318 166493614 -35834733 - AluSx SINE Alu -14 298 1 675 312 69 9 chr4 166493671 166493902 -35834445 - MIR SINE MIR -6 256 12 22 70 0 0 chr4 166494335 166494378 -35833969 + AT_rich Low_complexity Low_complexity 1 43 0 21 82 0 0 chr4 166495598 166495647 -35832700 + AT_rich Low_complexity Low_complexity 1 49 0 218 182 0 0 chr4 166496089 166496133 -35832214 + GA-rich Low_complexity Low_complexity 2 45 0 186 309 43 21 chr4 166496135 166496229 -35832118 + MIR3 SINE MIR 108 203 -5 25 0 0 0 chr4 166496352 166496377 -35831970 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr4 166496785 166496814 -35831533 + AT_rich Low_complexity Low_complexity 1 29 0 201 245 19 38 chr4 166497554 166497607 -35830740 - L2 LINE L2 -27 3245 3194 * 337 354 63 35 chr4 166497598 166497965 -35830382 - L2 LINE L2 -1133 2181 1805 22 0 0 0 chr4 166497967 166497989 -35830358 + AT_rich Low_complexity Low_complexity 1 22 0 2447 58 3 10 chr4 166497989 166498302 -35830045 + AluY SINE Alu 1 311 0 247 292 67 33 chr4 166498940 166499060 -35829287 + MIR SINE MIR 86 209 -53 536 234 161 61 chr4 166499301 166499562 -35828785 + L2 LINE L2 3019 3305 -8 244 351 11 0 chr4 166499882 166499976 -35828371 - MIR SINE MIR 0 262 168 246 273 30 91 chr4 166500062 166500194 -35828153 - MIR SINE MIR -118 144 21 218 262 24 12 chr4 166500627 166500711 -35827636 + (TA)n Simple_repeat Simple_repeat 1 85 0 2171 120 3 0 chr4 166502506 166502798 -35825549 + AluSg SINE Alu 1 293 -17 24 53 0 0 chr4 166502851 166502889 -35825458 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr4 166503009 166503034 -35825313 + AT_rich Low_complexity Low_complexity 1 25 0 1591 180 48 70 chr4 166503417 166503900 -35824447 + L1MB7 LINE L1 5706 6177 -7 257 296 168 6 chr4 166504160 166504339 -35824008 + L1ME4a LINE L1 5848 6055 -66 1470 239 32 35 chr4 166504345 166504806 -35823541 + MLT1C LTR MaLR 1 460 -7 424 203 42 25 chr4 166504826 166504944 -35823403 - L1MD3 LINE L1 -10 7985 7866 2530 214 18 16 chr4 166504973 166505747 -35822600 - L1MD2 LINE L1 -515 5844 5069 541 315 25 34 chr4 166506120 166506355 -35821992 - MIR SINE MIR 0 262 30 180 344 56 33 chr4 166506909 166506999 -35821348 + L2 LINE L2 3198 3289 -24 193 95 24 24 chr4 166507109 166507151 -35821196 + (TTCC)n Simple_repeat Simple_repeat 4 45 0 1700 150 45 8 chr4 166510154 166510421 -35817926 + AluSx SINE Alu 25 301 -11 330 318 36 36 chr4 166512008 166512285 -35816062 + MER89-int LTR ERV1 4399 4675 -2126 2262 143 9 0 chr4 166513068 166513403 -35814944 + MER1B DNA MER1_type 1 338 -1 2211 169 33 19 chr4 166514484 166514904 -35813443 + MSTB LTR MaLR 1 426 0 273 257 191 26 chr4 166514985 166515137 -35813210 - MIR SINE MIR -65 197 21 480 35 0 0 chr4 166515301 166515359 -35812988 + (CA)n Simple_repeat Simple_repeat 2 59 0 292 274 0 14 chr4 166516132 166516205 -35812142 + GA-rich Low_complexity Low_complexity 3 74 0 330 275 0 22 chr4 166516334 166516425 -35811922 - MIR3 SINE MIR -7 201 113 183 42 0 0 chr4 166516551 166516575 -35811772 + (CA)n Simple_repeat Simple_repeat 2 25 0 411 56 0 0 chr4 166516812 166516866 -35811481 + (TG)n Simple_repeat Simple_repeat 2 55 0 242 405 0 0 chr4 166516986 166517075 -35811272 - L2 LINE L2 -12 3260 3172 753 310 63 19 chr4 166517544 166517999 -35810348 + L2 LINE L2 2546 3017 -296 183 360 13 13 chr4 166518455 166518530 -35809817 - L2 LINE L2 -61 3211 3137 353 354 76 6 chr4 166518956 166519114 -35809233 - L2 LINE L2 -3 3269 3101 860 247 88 73 chr4 166519200 166519609 -35808738 - LTR16C LTR ERVL 0 491 77 518 304 130 31 chr4 166520025 166520416 -35807931 - L2 LINE L2 -736 2578 2149 1821 163 10 7 chr4 166520429 166520730 -35807617 + AluJb SINE Alu 5 306 -6 624 150 0 109 chr4 166521018 166521165 -35807182 + LTR1 LTR ERV1 1 131 -654 9737 102 8 0 chr4 166521185 166522525 -35805822 - THE1A-int LTR MaLR -230 1350 1 2381 118 8 8 chr4 166522525 166522880 -35805467 - THE1A LTR MaLR 0 355 1 679 128 10 0 chr4 166522923 166523025 -35805322 - FLAM_A SINE Alu -18 124 22 193 209 134 0 chr4 166524931 166524998 -35803349 - L2 LINE L2 -309 2963 2888 2222 104 13 3 chr4 166525242 166525549 -35802798 + AluSx SINE Alu 1 310 -2 399 42 0 0 chr4 166526964 166527012 -35801335 - L1P LINE L1 -1584 4562 4515 4719 24 4 0 chr4 166527012 166527564 -35800783 + L1PA4 LINE L1 5601 6155 0 210 37 0 0 chr4 166527575 166527602 -35800745 + (CA)n Simple_repeat Simple_repeat 2 28 0 313 269 87 27 chr4 166527653 166527802 -35800545 + MIR SINE MIR 34 191 -71 2110 187 28 39 chr4 166527921 166528288 -35800059 - MER82 DNA MER2_type 0 653 290 1673 160 60 78 chr4 166528288 166528670 -35799677 + THE1C LTR MaLR 1 375 0 2110 187 28 39 chr4 166528670 166528762 -35799585 - MER82 DNA MER2_type -363 290 199 3717 146 31 11 chr4 166528762 166529428 -35798919 - Tigger3(Golem) DNA MER2_type 0 3029 2350 251 276 0 0 chr4 166529528 166529586 -35798761 - MER82 DNA MER2_type -586 67 10 209 329 129 0 chr4 166529595 166529665 -35798682 - L2 LINE L2 -36 3277 3199 22 0 0 0 chr4 166529819 166529841 -35798506 + AT_rich Low_complexity Low_complexity 1 22 0 398 375 99 25 chr4 166530449 166531004 -35797343 - L2 LINE L2 -609 2705 2110 1497 189 20 14 chr4 166531180 166531477 -35796870 + AluJb SINE Alu 1 299 -13 242 323 25 19 chr4 166531944 166532102 -35796245 + L1ME LINE L1 5617 5775 -346 34 55 0 0 chr4 166532583 166532638 -35795709 + AT_rich Low_complexity Low_complexity 1 55 0 1824 211 70 27 chr4 166534372 166534856 -35793491 + Charlie1b DNA MER1_type 5 509 -14 212 250 0 0 chr4 166534863 166534907 -35793440 + L2 LINE L2 3266 3309 -4 249 215 66 0 chr4 166536428 166536549 -35791798 + (TA)n Simple_repeat Simple_repeat 1 129 0 205 407 0 0 chr4 166536730 166536811 -35791536 - L3 LINE CR1 -14 1563 1483 522 199 179 13 chr4 166537131 166537282 -35791065 + MER5A DNA MER1_type 12 187 -2 325 375 18 10 chr4 166537491 166537658 -35790689 - MIR SINE MIR -65 143 5 307 316 209 10 chr4 166537859 166538065 -35790282 + MIR SINE MIR 12 258 -4 286 262 306 5 chr4 166538429 166538635 -35789712 + L2 LINE L2 2480 2747 -567 * 655 291 117 34 chr4 166538626 166539035 -35789312 + L2 LINE L2 2869 3311 -2 615 62 0 0 chr4 166539072 166539152 -35789195 + (TA)n Simple_repeat Simple_repeat 1 80 0 264 306 100 31 chr4 166540421 166540581 -35787766 + MIR3 SINE MIR 14 184 -24 338 265 113 47 chr4 166542366 166542623 -35785724 - L1ME4a LINE L1 -2 6119 5846 469 201 0 87 chr4 166543764 166543968 -35784379 + MER34B LTR ERV1 13 175 -390 504 270 28 53 chr4 166544102 166544387 -35783960 + MER34 LTR ERV1 281 565 0 195 333 0 0 chr4 166544650 166544704 -35783643 - L2 LINE L2 -40 3273 3220 341 245 11 32 chr4 166544781 166544875 -35783472 - L2 LINE L2 -1 3312 3221 923 174 40 0 chr4 166549050 166549251 -35779096 + L1MA9 LINE L1 6104 6312 0 484 238 30 0 chr4 166550016 166550117 -35778230 + MER5A DNA MER1_type 9 112 -77 321 280 90 0 chr4 166555136 166555236 -35773111 + L2 LINE L2 3159 3267 -5 227 303 34 22 chr4 166555279 166555368 -35772979 + MIR SINE MIR 20 109 -153 1770 155 7 11 chr4 166555801 166556115 -35772232 + AluJb SINE Alu 1 313 0 309 37 9 102 chr4 166557004 166557112 -35771235 + (TA)n Simple_repeat Simple_repeat 1 98 0 229 202 164 87 chr4 166557346 166557450 -35770897 + MIR3 SINE MIR 81 192 -16 487 298 112 73 chr4 166557894 166558277 -35770070 - L2 LINE L2 -9 3304 2907 1545 108 5 0 chr4 166559186 166559390 -35768957 - AluSp SINE Alu -103 210 6 2237 230 81 32 chr4 166559390 166560130 -35768217 - L1ME2 LINE L1 -6 6158 5383 1862 156 15 63 chr4 166560543 166560953 -35767394 + MLT1B LTR MaLR 1 390 0 552 266 5 0 chr4 166561031 166561219 -35767128 - L1ME2 LINE L1 -852 5294 5106 857 237 51 4 chr4 166561224 166561481 -35766866 - L1ME2 LINE L1 -1082 5064 4796 1476 151 12 8 chr4 166561506 166561764 -35766583 - Tigger5 DNA MER2_type -8 2315 2057 1413 247 75 20 chr4 166561814 166562372 -35765975 - L1ME2 LINE L1 -1346 4800 4212 1408 224 81 38 chr4 166562372 166562453 -35765894 + MLT1C LTR MaLR 1 77 -390 2169 136 13 31 chr4 166562453 166562835 -35765512 + THE1C LTR MaLR 1 375 0 1408 224 81 38 chr4 166562835 166563199 -35765148 + MLT1C LTR MaLR 77 465 -2 814 263 100 7 chr4 166563211 166563500 -35764847 - L1ME2 LINE L1 -1941 4205 3890 1131 137 66 0 chr4 166563507 166563689 -35764658 + MER2 DNA MER2_type 7 200 -145 1446 208 4 0 chr4 166563689 166563954 -35764393 - AluJo SINE Alu -8 304 39 622 191 61 34 chr4 166563954 166564101 -35764246 + MER2 DNA MER2_type 195 345 0 495 267 98 0 chr4 166564101 166564337 -35764010 - L1ME2 LINE L1 -2256 3890 3632 262 263 241 7 chr4 166564326 166564463 -35763884 - L1ME2 LINE L1 -3411 2735 2567 * 659 350 30 10 chr4 166564489 166564786 -35763561 + ERVL LTR ERVL 4500 4802 -962 946 295 136 3 chr4 166565548 166565850 -35762497 + LTR16C LTR ERVL 150 491 0 349 301 65 0 chr4 166565884 166566007 -35762340 - HERV16 LTR ERVL -2106 2890 2760 192 391 154 13 chr4 166566454 166566753 -35761594 + L2 LINE L2 2432 2772 -542 231 348 133 74 chr4 166566784 166567204 -35761143 + L2 LINE L2 2828 3272 0 1964 132 16 16 chr4 166567430 166567740 -35760607 + AluSx SINE Alu 1 310 -2 291 378 59 70 chr4 166568844 166569304 -35759043 - L2 LINE L2 0 3272 2818 1383 177 67 57 chr4 166569731 166570047 -35758300 - MSTA LTR MaLR -105 323 5 8993 160 58 11 chr4 166570049 166571627 -35756720 - MSTA-int LTR MaLR 0 1651 1 1833 197 71 17 chr4 166571627 166572033 -35756314 - MSTA LTR MaLR 0 428 1 436 388 8 4 chr4 166573710 166573952 -35754395 - L3 LINE CR1 -39 1538 1296 339 363 11 26 chr4 166574236 166574426 -35753921 - L3 LINE CR1 -291 1286 1100 1135 15 44 0 chr4 166574494 166574630 -35753717 - L1PA2 LINE L1 0 6155 6014 526 233 65 56 chr4 166574684 166574916 -35753431 - LTR37A LTR ERV1 0 426 193 307 104 39 104 chr4 166574910 166574987 -35753360 - LTR37A LTR ERV1 -354 72 1 * 21 100 0 0 chr4 166575650 166575720 -35752627 + AT_rich Low_complexity Low_complexity 1 70 0 1454 216 67 34 chr4 166575931 166576376 -35751971 - MLT1C LTR MaLR -2 465 6 258 32 0 0 chr4 166576551 166576582 -35751765 + (TAA)n Simple_repeat Simple_repeat 3 33 0 1613 234 67 8 chr4 166576695 166577133 -35751214 - MER110A LTR ERV1 0 468 39 271 366 15 30 chr4 166577532 166577666 -35750681 + MLT1I LTR MaLR 35 166 -243 21 0 0 0 chr4 166578310 166578331 -35750016 + AT_rich Low_complexity Low_complexity 1 21 0 280 149 15 15 chr4 166579564 166579631 -35748716 + (CA)n Simple_repeat Simple_repeat 2 68 0 182 43 21 64 chr4 166579647 166579694 -35748653 + (TAAAAA)n Simple_repeat Simple_repeat 3 47 0 58 47 0 0 chr4 166579695 166579781 -35748566 + AT_rich Low_complexity Low_complexity 1 86 0 219 140 0 0 chr4 166579937 166579987 -35748360 + (TA)n Simple_repeat Simple_repeat 2 51 0 21 89 0 0 chr4 166580091 166580147 -35748200 + AT_rich Low_complexity Low_complexity 1 56 0 279 354 90 28 chr4 166580352 166580496 -35747851 - MIR3 SINE MIR -55 153 1 245 29 0 29 chr4 166580675 166580710 -35747637 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 307 130 0 0 chr4 166580716 166580762 -35747585 - AluSp/q SINE Alu -20 283 238 1938 235 40 42 chr4 166581002 166581686 -35746661 - MER69 DNA AcHobo 0 2526 1845 467 276 16 0 chr4 166582077 166582200 -35746147 + MER90 LTR ERV1 244 368 -246 1210 321 35 8 chr4 166582200 166582574 -35745773 + LTR16B LTR ERVL 81 464 0 1260 335 81 32 chr4 166582822 166583690 -35744657 + ERVL LTR ERVL 3784 4693 -1071 593 204 9 0 chr4 166583741 166583854 -35744493 + MSTC LTR MaLR 1 114 -314 625 277 65 22 chr4 166584082 166584313 -35744034 - MIR SINE MIR -19 243 3 202 286 228 37 chr4 166584529 166584718 -35743629 + MIR SINE MIR 25 249 -13 25 65 0 0 chr4 166584793 166584839 -35743508 + AT_rich Low_complexity Low_complexity 1 46 0 22 56 0 0 chr4 166585605 166585641 -35742706 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr4 166585810 166585843 -35742504 + AT_rich Low_complexity Low_complexity 1 33 0 1724 267 37 27 chr4 166585962 166586475 -35741872 + LTR40a LTR ERVL 1 518 -1 3212 88 5 0 chr4 166587314 166587745 -35740602 - MER57B LTR ERV1 -1 433 1 212 158 0 0 chr4 166587995 166588033 -35740314 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 206 368 34 43 chr4 166588034 166588151 -35740196 - L2 LINE L2 -4 3268 3153 21 0 0 0 chr4 166589495 166589516 -35738831 + AT_rich Low_complexity Low_complexity 1 21 0 421 128 40 8 chr4 166589992 166590117 -35738230 + (TTATA)n Simple_repeat Simple_repeat 1 129 0 42 20 0 0 chr4 166590142 166590191 -35738156 + AT_rich Low_complexity Low_complexity 1 49 0 269 242 0 15 chr4 166590261 166590327 -35738020 + MLT1J2 LTR MaLR 45 109 -341 330 250 36 131 chr4 166590454 166590622 -35737725 + MLT1J2 LTR MaLR 273 424 -26 261 326 68 38 chr4 166590653 166590785 -35737562 + L2 LINE L2 3137 3272 0 37 52 0 0 chr4 166590874 166590932 -35737415 + AT_rich Low_complexity Low_complexity 1 58 0 846 85 7 85 chr4 166591393 166591534 -35736813 + MER1B DNA MER1_type 209 338 -1 3622 186 64 10 chr4 166591534 166592322 -35736025 - L1HS LINE L1 -138 6206 5353 280 250 80 23 chr4 166593806 166593894 -35734453 + MLT1H LTR MaLR 136 228 -321 229 297 12 109 chr4 166595058 166595223 -35733124 + MLT1H-int LTR MaLR 1023 1171 -200 2528 129 41 2 chr4 166595325 166595737 -35732610 - MSTA LTR MaLR 0 428 1 275 280 64 64 chr4 166595870 166596027 -35732320 + MLT1H LTR MaLR 103 259 -290 1703 209 60 44 chr4 166597746 166598244 -35730103 + MER119 DNA MER1_type 78 583 0 856 221 19 29 chr4 166598819 166598934 -35729413 + MIR SINE MIR 32 146 -116 2292 120 16 25 chr4 166598934 166599301 -35729046 - THE1B LTR MaLR 0 364 1 856 221 19 29 chr4 166599301 166599393 -35728954 + MIR SINE MIR 146 237 -25 391 271 62 89 chr4 166599669 166599961 -35728386 + MLT1I LTR MaLR 77 360 -49 2223 78 14 7 chr4 166599983 166600277 -35728070 - AluY SINE Alu -15 296 1 216 0 0 0 chr4 166600418 166600442 -35727905 + (TA)n Simple_repeat Simple_repeat 2 25 0 256 263 12 52 chr4 166600791 166600892 -35727455 + MER5A DNA MER1_type 63 169 -20 32 0 0 0 chr4 166601011 166601043 -35727304 + AT_rich Low_complexity Low_complexity 1 32 0 342 122 56 0 chr4 166601043 166601150 -35727197 + (TA)n Simple_repeat Simple_repeat 1 113 0 2209 94 3 0 chr4 166601151 166601438 -35726909 - AluSx SINE Alu -24 288 1 2519 261 72 38 chr4 166601960 166602819 -35725528 - L2 LINE L2 -283 3030 2149 187 272 35 44 chr4 166603253 166603367 -35724980 - L3b LINE CR1 -310 1273 1161 1048 210 16 58 chr4 166603735 166604045 -35724302 + AluJo SINE Alu 5 301 -1 1264 75 65 0 chr4 166604199 166604385 -35723962 + L1PA11 LINE L1 5975 6172 -2 2198 129 7 3 chr4 166605264 166605573 -35722774 - AluSx SINE Alu -2 310 1 1722 191 6 30 chr4 166606047 166606407 -35721940 + MLT1B LTR MaLR 8 358 -32 896 193 6 6 chr4 166606407 166606568 -35721779 + MER2 DNA MER2_type 1 161 -184 599 119 0 0 chr4 166606568 166606652 -35721695 + HY3 scRNA scRNA 1 84 -17 1020 162 81 0 chr4 166606699 166606884 -35721463 + MER2 DNA MER2_type 146 345 0 277 86 0 0 chr4 166606915 166606950 -35721397 + MLT1B LTR MaLR 356 390 0 25 0 0 0 chr4 166607132 166607157 -35721190 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr4 166607349 166607378 -35720969 + AT_rich Low_complexity Low_complexity 1 29 0 2520 70 0 6 chr4 166607419 166607732 -35720615 - AluY SINE Alu 0 311 1 1256 169 10 5 chr4 166607734 166607941 -35720406 - AluJb SINE Alu -14 298 91 469 268 63 63 chr4 166608063 166608302 -35720045 - L2 LINE L2 -5 3308 3070 1987 122 0 30 chr4 166608777 166609073 -35719274 + AluSx SINE Alu 1 287 -25 26 0 0 0 chr4 166609439 166609465 -35718882 + AT_rich Low_complexity Low_complexity 1 26 0 5900 83 11 0 chr4 166609609 166610412 -35717935 - L1P LINE L1 -1515 4631 3820 7016 52 8 5 chr4 166610412 166611968 -35716379 + L1PA7 LINE L1 4590 6146 -8 195 204 0 0 chr4 166613048 166613102 -35715245 + CT-rich Low_complexity Low_complexity 2 55 0 276 30 0 0 chr4 166613102 166613135 -35715212 + (CA)n Simple_repeat Simple_repeat 1 33 0 2419 71 0 0 chr4 166613198 166613494 -35714853 + AluY SINE Alu 7 302 -9 832 324 137 48 chr4 166613631 166613849 -35714498 - L2 LINE L2 -860 2454 2257 1703 208 17 11 chr4 166613849 166614209 -35714138 + MLT1A1 LTR MaLR 4 365 0 832 324 137 48 chr4 166614209 166615055 -35713292 - L2 LINE L2 -1057 2257 1295 336 198 23 12 chr4 166615117 166615203 -35713144 - Tigger5 DNA MER2_type 0 2323 2237 561 153 0 76 chr4 166615214 166615311 -35713036 + Tigger5 DNA MER2_type 1 64 -2259 244 226 0 19 chr4 166615311 166615364 -35712983 - Tigger5 DNA MER2_type -1 2322 2271 194 381 52 0 chr4 166615427 166615524 -35712823 - L2 LINE L2 -2165 1149 1048 1378 218 11 4 chr4 166615575 166615846 -35712501 - MLT1A1 LTR MaLR -88 277 5 25 0 0 0 chr4 166615870 166615895 -35712452 + AT_rich Low_complexity Low_complexity 1 25 0 733 161 0 23 chr4 166615897 166616027 -35712320 + FLAM_C SINE Alu 1 127 -6 21 57 0 0 chr4 166616399 166616434 -35711913 + AT_rich Low_complexity Low_complexity 1 35 0 1629 185 44 0 chr4 166616530 166616828 -35711519 - AluJb SINE Alu 0 312 2 21 0 0 0 chr4 166617001 166617022 -35711325 + AT_rich Low_complexity Low_complexity 1 21 0 340 351 79 6 chr4 166618215 166618380 -35709967 + MIR SINE MIR 18 194 -68 21 0 0 0 chr4 166619544 166619565 -35708782 + AT_rich Low_complexity Low_complexity 1 21 0 805 187 0 7 chr4 166619596 166619746 -35708601 + AluJb SINE Alu 162 310 -2 27 0 0 0 chr4 166619866 166619893 -35708454 + AT_rich Low_complexity Low_complexity 1 27 0 221 374 26 17 chr4 166620000 166620115 -35708232 - MIR SINE MIR -65 197 82 1655 213 58 5 chr4 166622835 166623248 -35705099 - MER63B DNA MER1_type 0 436 2 1725 152 10 14 chr4 166623834 166624130 -35704217 + AluJb SINE Alu 9 303 -9 694 205 6 32 chr4 166624364 166624520 -35703827 - MER106B DNA MER1_type -907 152 1 620 235 93 0 chr4 166624747 166624930 -35703417 - MER3 DNA MER1_type -8 201 2 420 296 0 0 chr4 166624944 166625042 -35703305 + MER5A DNA MER1_type 6 103 -86 28 48 0 0 chr4 166625117 166625159 -35703188 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr4 166627661 166627692 -35700655 + AT_rich Low_complexity Low_complexity 1 31 0 689 229 268 45 chr4 166628081 166628580 -35699767 - LTR50 LTR ERVL -46 477 1 232 331 96 22 chr4 166628855 166628991 -35699356 + MIR3 SINE MIR 40 185 -23 822 153 0 0 chr4 166629197 166629321 -35699026 + FLAM_C SINE Alu 1 124 -19 399 340 41 25 chr4 166629948 166630192 -35698155 + L3b LINE CR1 1103 1350 -233 1336 139 218 8 chr4 166632026 166632278 -35696069 + AluSg1 SINE Alu 3 307 -2 329 304 164 19 chr4 166632951 166633158 -35695189 - MIR SINE MIR -19 243 7 289 349 38 9 chr4 166633297 166633403 -35694944 - L2 LINE L2 -1 3271 3163 22 35 0 0 chr4 166633403 166633432 -35694915 + AT_rich Low_complexity Low_complexity 1 29 0 604 273 27 11 chr4 166634165 166634348 -35693999 - LTR16A1 LTR ERVL 0 457 272 268 316 24 72 chr4 166636146 166636355 -35691992 + MER21-int LTR ERV1 2515 2713 -1478 223 330 31 31 chr4 166639521 166639618 -35688729 + L2 LINE L2 3116 3212 -60 860 158 40 36 chr4 166639638 166639942 -35688405 + THE1C LTR MaLR 1 374 -1 2232 268 71 51 chr4 166640069 166641403 -35686944 + L1M4 LINE L1 3496 4856 -1290 1303 320 57 5 chr4 166641430 166641836 -35686511 + LTR16A LTR ERVL 24 450 0 329 224 53 13 chr4 166641836 166641912 -35686435 + HERV16 LTR ERVL 1 79 -4917 * 1982 312 72 12 chr4 166641908 166642053 -35686294 + HERV16 LTR ERVL 2404 2539 -2457 2269 80 0 0 chr4 166642053 166642341 -35686006 - AluY SINE Alu -3 308 21 1982 312 72 12 chr4 166642341 166642849 -35685498 + HERV16 LTR ERVL 2539 3096 -1900 332 329 8 7 chr4 166643049 166643289 -35685058 + HERV16 LTR ERVL 3247 3314 -1682 965 358 31 25 chr4 166643326 166643831 -35684516 + HERV16 LTR ERVL 3731 4242 -1412 2353 150 33 14 chr4 166643831 166644251 -35684096 - MSTA LTR MaLR 0 428 1 965 358 31 25 chr4 166644251 166644388 -35683959 + HERV16 LTR ERVL 4242 4377 -1277 2344 89 3 0 chr4 166644388 166644692 -35683655 + AluY SINE Alu 5 309 -2 237 122 49 0 chr4 166644706 166644747 -35683600 - MLT2B2 LTR ERVL -472 43 1 228 257 50 0 chr4 166644814 166644915 -35683432 + (TA)n Simple_repeat Simple_repeat 2 107 0 258 292 14 0 chr4 166645002 166645074 -35683273 + MIR SINE MIR 82 154 -108 537 276 53 0 chr4 166645162 166645332 -35683015 + MIR SINE MIR 84 262 0 1092 313 83 16 chr4 166645668 166646279 -35682068 - MLT2F LTR ERVL -11 652 1 764 62 0 0 chr4 166646520 166646616 -35681731 - L1PA5 LINE L1 -161 5993 5898 324 167 0 0 chr4 166646635 166646707 -35681640 + A-rich Low_complexity Low_complexity 1 72 0 316 359 20 4 chr4 166647013 166647258 -35681089 - L1MCb LINE L1 -1114 5734 5486 795 210 27 16 chr4 166647294 166647480 -35680867 + MER20 DNA MER1_type 31 218 -1 247 245 20 31 chr4 166647572 166647670 -35680677 - L1P LINE L1 -1520 4626 4530 312 308 31 18 chr4 166647674 166647901 -35680446 - L1MCb LINE L1 -1565 5283 5054 209 120 0 107 chr4 166648673 166648748 -35679599 + (TTTTA)n Simple_repeat Simple_repeat 2 68 0 284 264 72 21 chr4 166648790 166648983 -35679364 - L1MCb LINE L1 -3084 3764 3562 3030 245 84 10 chr4 166649454 166649995 -35678352 - L1MCb LINE L1 -5316 1532 1033 1620 198 24 12 chr4 166649995 166650328 -35678019 + MER44D DNA MER2_type 2 608 -1 3030 245 84 10 chr4 166650328 166651020 -35677327 - L1MCb LINE L1 -5815 1033 290 1989 89 8 0 chr4 166652140 166652398 -35675949 + AluSc SINE Alu 35 294 -15 1962 131 7 20 chr4 166652629 166652934 -35675413 + AluSx SINE Alu 1 301 -11 26 30 0 0 chr4 166654095 166654128 -35674219 + AT_rich Low_complexity Low_complexity 1 33 0 440 321 89 55 chr4 166654467 166654910 -35673437 + L2 LINE L2 2703 3151 -121 1967 141 13 0 chr4 166655023 166655329 -35673018 + AluSx SINE Alu 1 310 -2 308 371 88 0 chr4 166655614 166655808 -35672539 + MIR SINE MIR 48 258 -4 408 313 125 65 chr4 166656242 166656731 -35671616 - L1M4 LINE L1 -5579 1270 753 265 265 125 15 chr4 166657673 166657809 -35670538 - HAL1b LINE L1 -2 1346 1196 29 0 0 0 chr4 166658673 166658702 -35669645 + AT_rich Low_complexity Low_complexity 1 29 0 1997 129 0 7 chr4 166658928 166659223 -35669124 - AluSx SINE Alu -19 293 1 23 0 0 0 chr4 166661318 166661341 -35667006 + AT_rich Low_complexity Low_complexity 1 23 0 570 289 94 58 chr4 166662195 166662630 -35665717 + L2 LINE L2 2150 3272 0 419 328 203 22 chr4 166662672 166663077 -35665270 + L3 LINE CR1 430 907 -670 216 0 0 0 chr4 166663114 166663138 -35665209 + (TA)n Simple_repeat Simple_repeat 1 24 0 2196 170 123 131 chr4 166663564 166664149 -35664198 - L1MC3 LINE L1 -37 7748 7094 271 244 13 13 chr4 166664149 166664227 -35664120 - MLT1F1 LTR MaLR -451 116 39 2196 170 123 131 chr4 166664227 166664498 -35663849 - L1MC3 LINE L1 -691 7094 6822 21 0 0 0 chr4 166665975 166665996 -35662351 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 166668007 166668028 -35660319 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 166668786 166668810 -35659537 + AT_rich Low_complexity Low_complexity 1 24 0 5874 37 3 0 chr4 166668860 166669619 -35658728 + L1PA3 LINE L1 5428 6188 0 23 33 0 0 chr4 166669877 166669907 -35658440 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr4 166671047 166671086 -35657261 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr4 166671282 166671310 -35657037 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 166673286 166673308 -35655039 + AT_rich Low_complexity Low_complexity 1 22 0 1508 151 21 0 chr4 166674418 166674546 -35653801 + AluSx SINE Alu 1 138 -174 180 0 0 0 chr4 166674546 166674566 -35653781 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1508 151 21 0 chr4 166674566 166674675 -35653672 + AluSx SINE Alu 138 243 -69 33 43 0 0 chr4 166675895 166675942 -35652405 + AT_rich Low_complexity Low_complexity 1 47 0 326 173 0 0 chr4 166676173 166676225 -35652122 + MLT1D LTR MaLR 1 52 -453 1533 230 57 25 chr4 166676287 166676726 -35651621 + MLT1D LTR MaLR 53 505 0 333 294 16 16 chr4 166678800 166678926 -35649421 - MIR SINE MIR -15 247 122 259 311 76 72 chr4 166678930 166679181 -35649166 + L2 LINE L2 1820 2071 -1243 1493 142 10 35 chr4 166679295 166679584 -35648763 - L1MB4 LINE L1 -312 5868 5587 318 264 35 0 chr4 166679839 166679926 -35648421 - LTR37B LTR ERV1 -373 95 6 253 173 213 40 chr4 166680003 166680078 -35648269 + L1MC/D LINE L1 5699 5786 -2209 * 4833 155 46 7 chr4 166680062 166680989 -35647358 - L1MC1 LINE L1 -127 6206 5249 363 298 160 12 chr4 166681868 166682072 -35646275 - MIR SINE MIR 0 262 31 186 320 67 0 chr4 166682236 166682311 -35646036 + L2 LINE L2 3233 3312 -1 620 199 0 3 chr4 166682946 166683179 -35645168 + AluJ SINE Alu 1 300 -12 196 225 56 70 chr4 166683660 166683731 -35644616 + MIR SINE MIR 178 247 -15 2469 127 3 0 chr4 166684093 166684456 -35643891 + THE1B LTR MaLR 1 364 0 2033 121 0 14 chr4 166686829 166687119 -35641228 - AluSg SINE Alu -24 286 1 22 56 0 0 chr4 166687491 166687527 -35640820 + AT_rich Low_complexity Low_complexity 1 36 0 208 297 11 22 chr4 166688982 166689073 -35639274 - MIR3 SINE MIR -7 201 112 546 240 80 34 chr4 166689262 166689437 -35638910 - MIR SINE MIR -15 247 65 265 231 51 26 chr4 166689727 166689805 -35638542 - L2 LINE L2 -62 3251 3172 21 0 0 0 chr4 166691622 166691643 -35636704 + AT_rich Low_complexity Low_complexity 1 21 0 2152 103 7 3 chr4 166694071 166694362 -35633985 - AluSg SINE Alu -18 292 1 2304 281 141 45 chr4 166694362 166694584 -35633763 - L2 LINE L2 -531 2783 2584 1825 144 0 7 chr4 166694584 166694868 -35633479 + AluSx SINE Alu 1 282 -30 2304 281 141 45 chr4 166694868 166695794 -35632553 - L2 LINE L2 -730 2584 1525 638 229 50 39 chr4 166695882 166696061 -35632286 - MER58A DNA MER1_type -43 181 1 332 194 0 0 chr4 166696062 166696124 -35632223 - L2 LINE L2 -1801 1513 1452 1736 237 108 21 chr4 166696218 166696987 -35631360 - L1MDa LINE L1 -2787 3753 2918 353 108 0 31 chr4 166697872 166697937 -35630410 + (TTTTC)n Simple_repeat Simple_repeat 2 64 0 282 0 0 0 chr4 166699433 166699465 -35628882 - L1P LINE L1 -3333 2813 2782 3865 182 70 39 chr4 166702228 166702463 -35625884 - L1MDa LINE L1 -3850 2690 2464 2342 110 3 0 chr4 166702463 166702773 -35625574 - AluSp SINE Alu -2 311 1 3865 182 70 39 chr4 166702773 166703174 -35625173 - L1MDa LINE L1 -4076 2464 2077 1823 171 3 10 chr4 166703174 166703473 -35624874 - AluSx SINE Alu -10 302 6 3865 182 70 39 chr4 166703473 166703990 -35624357 - L1MDa LINE L1 -4463 2077 1502 428 261 11 0 chr4 166703990 166704078 -35624269 + MER2 DNA MER2_type 2 90 -255 572 181 0 0 chr4 166704091 166704207 -35624140 - L1 LINE L1 -1439 4707 4592 207 100 0 0 chr4 166704438 166704468 -35623879 + (TA)n Simple_repeat Simple_repeat 1 30 0 582 331 117 34 chr4 166704656 166705067 -35623280 + L3 LINE CR1 1131 1575 -2 23 54 0 0 chr4 166705977 166706014 -35622333 + AT_rich Low_complexity Low_complexity 1 37 0 769 221 6 6 chr4 166706711 166706874 -35621473 - FRAM SINE Alu -13 163 1 2165 100 0 10 chr4 166706975 166707266 -35621081 - AluSc SINE Alu -21 288 1 180 125 0 0 chr4 166707416 166707448 -35620899 + (TATG)n Simple_repeat Simple_repeat 1 32 0 706 220 0 0 chr4 166707448 166707580 -35620767 - FRAM SINE Alu -24 152 21 528 350 164 8 chr4 166707776 166708259 -35620088 + L3 LINE CR1 915 1472 -105 425 311 0 0 chr4 166708794 166708897 -35619450 + MIR3 SINE MIR 64 166 -42 1629 165 3 50 chr4 166710575 166710878 -35617469 + AluJb SINE Alu 1 289 -23 4877 194 49 66 chr4 166711586 166713006 -35615341 - Charlie1a DNA MER1_type 0 1455 60 266 257 0 71 chr4 166713052 166713122 -35615225 - Charlie1a DNA MER1_type -1389 66 2 268 343 100 14 chr4 166713490 166713630 -35614717 + MIR3 SINE MIR 20 171 -37 200 323 79 45 chr4 166713685 166713851 -35614496 + MIR SINE MIR 37 206 -56 180 406 24 16 chr4 166714157 166714280 -35614067 - MIR SINE MIR -72 190 67 331 327 0 26 chr4 166714355 166714468 -35613879 - MIR SINE MIR -79 129 20 2135 88 3 56 chr4 166714923 166715243 -35613104 + AluSc SINE Alu 1 303 -6 1133 240 129 18 chr4 166715541 166715937 -35612410 - L1ME3A LINE L1 0 6170 5731 1204 267 84 12 chr4 166715974 166716401 -35611946 + L1ME LINE L1 5263 5720 -450 370 288 133 27 chr4 166716551 166716736 -35611611 - L2 LINE L2 -322 2991 2791 918 287 109 27 chr4 166716740 166717106 -35611241 - L2 LINE L2 -849 2465 2070 21805 49 49 3 chr4 166718059 166720862 -35607485 - L1P LINE L1 -3212 2934 2 366 177 0 0 chr4 166720866 166720928 -35607419 - L1MA4 LINE L1 -332 5968 5907 21 36 0 0 chr4 166721182 166721210 -35607137 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 166721838 166721863 -35606484 + AT_rich Low_complexity Low_complexity 1 25 0 26 74 0 0 chr4 166723229 166723283 -35605064 + AT_rich Low_complexity Low_complexity 1 54 0 606 235 126 35 chr4 166723305 166723535 -35604812 + MIR SINE MIR 11 261 -1 1070 139 33 11 chr4 166724787 166724967 -35603380 + AluJo SINE Alu 35 218 -94 342 0 0 0 chr4 166724985 166725023 -35603324 + (CA)n Simple_repeat Simple_repeat 2 39 0 188 214 18 0 chr4 166725262 166725318 -35603029 + (TA)n Simple_repeat Simple_repeat 1 57 0 2840 10 0 0 chr4 166726041 166726351 -35601996 - AluY SINE Alu -1 310 1 30 77 0 0 chr4 166726910 166726975 -35601372 + AT_rich Low_complexity Low_complexity 1 65 0 3166 214 127 27 chr4 166727243 166728024 -35600323 + L1M2 LINE L1 4 862 -5987 1050 126 78 5 chr4 166728027 166728233 -35600114 - L1 LINE L1 -757 5389 5169 4614 188 78 26 chr4 166728234 166729146 -35599201 + L1M2 LINE L1 1227 2199 -4650 2116 113 7 0 chr4 166729146 166729437 -35598910 - AluSx SINE Alu -19 293 1 4614 188 78 26 chr4 166729437 166729551 -35598796 + L1M2 LINE L1 2199 2306 -4543 4514 201 49 65 chr4 166729547 166731038 -35597309 - L1MA4 LINE L1 -712 5579 4134 * 246 300 120 42 chr4 166731166 166731449 -35596898 - HAL1 LINE L1 -970 1537 1233 22 35 0 0 chr4 166732012 166732041 -35596306 + AT_rich Low_complexity Low_complexity 1 29 0 1255 230 20 46 chr4 166733626 166733742 -35594605 - L1ME3 LINE L1 -22 6140 6023 2226 105 0 0 chr4 166733742 166734037 -35594310 + AluSq SINE Alu 1 295 -18 1255 230 20 46 chr4 166734037 166734311 -35594036 - L1ME3 LINE L1 -139 6023 5760 1789 194 82 123 chr4 166734313 166734599 -35593748 - MER92B LTR ERV1 0 636 340 2179 112 10 10 chr4 166734599 166734911 -35593436 - AluSx SINE Alu 0 312 1 1789 194 82 123 chr4 166734911 166735280 -35593067 - MER92B LTR ERV1 -296 340 8 1170 234 114 27 chr4 166735303 166735344 -35593003 - L1ME3 LINE L1 -433 5737 5701 1897 121 31 0 chr4 166735344 166735633 -35592714 - AluSx SINE Alu -14 298 1 1170 234 114 27 chr4 166735633 166736358 -35591989 - L1ME3 LINE L1 -469 5701 4901 330 300 90 20 chr4 166736397 166736597 -35591750 - L1ME3 LINE L1 -1308 4838 4625 359 316 9 9 chr4 166736907 166737021 -35591326 + L2 LINE L2 3199 3312 -1 27 0 0 0 chr4 166737226 166737253 -35591094 + AT_rich Low_complexity Low_complexity 1 27 0 30 27 0 0 chr4 166737261 166737298 -35591049 + AT_rich Low_complexity Low_complexity 1 37 0 1947 163 52 3 chr4 166738187 166738556 -35589791 - L1MB1 LINE L1 -1 6403 6017 2870 180 58 45 chr4 166738558 166738881 -35589466 - MER49 LTR ERV1 -9 914 597 1872 134 55 0 chr4 166738881 166739173 -35589174 + AluSg SINE Alu 1 308 -2 2870 180 58 45 chr4 166739173 166739488 -35588859 - MER49 LTR ERV1 -326 597 268 8489 213 56 20 chr4 166739489 166739921 -35588426 - L1MB1 LINE L1 -1440 4942 4527 300 27 0 0 chr4 166739921 166739958 -35588389 + (TG)n Simple_repeat Simple_repeat 2 38 0 8489 213 56 20 chr4 166739958 166741912 -35586435 - L1MB1 LINE L1 -1855 4527 2470 29 28 0 0 chr4 166741912 166741948 -35586399 + AT_rich Low_complexity Low_complexity 1 36 0 1216 215 31 40 chr4 166741974 166742362 -35585985 - L1MB1 LINE L1 -4217 2166 1424 2298 239 38 26 chr4 166742371 166742899 -35585448 + MLT2B3 LTR ERVL 17 550 -4 * 13760 147 32 11 chr4 166742870 166745192 -35583155 + Tigger1 DNA MER2_type 47 2418 0 300 98 0 0 chr4 166745196 166745237 -35583110 + MLT2B3 LTR ERVL 514 554 0 591 290 0 0 chr4 166745241 166745424 -35582923 - L1MB1 LINE L1 -4516 1787 1236 3932 214 16 26 chr4 166745472 166746274 -35582073 - MER21B LTR ERV1 -55 808 15 2405 269 85 39 chr4 166746302 166747720 -35580627 - L1M3d LINE L1 -4660 1231 1 390 364 120 11 chr4 166747730 166748098 -35580249 + L2 LINE L2 1773 2180 -1134 650 216 27 20 chr4 166748122 166748270 -35580077 + MER5B DNA MER1_type 26 174 -4 260 350 10 0 chr4 166748322 166748425 -35579922 + L2 LINE L2 3169 3272 0 538 316 129 12 chr4 166748594 166748850 -35579497 - LTR16A LTR ERVL -101 349 64 446 327 36 6 chr4 166748907 166749072 -35579275 - MIR3 SINE MIR -6 202 33 192 77 0 0 chr4 166749113 166749139 -35579208 + (TG)n Simple_repeat Simple_repeat 2 27 0 873 278 111 40 chr4 166750502 166750898 -35577449 - L1MDa LINE L1 -5654 886 463 * 39739 74 10 2 chr4 166750897 166756992 -35571355 - L1PA5 LINE L1 -5 6149 11 1845 204 46 35 chr4 166757001 166757363 -35570984 - L1MDa LINE L1 -6066 474 104 249 57 0 0 chr4 166757363 166757398 -35570949 + (TG)n Simple_repeat Simple_repeat 2 36 0 1845 204 46 35 chr4 166757398 166757496 -35570851 - L1MDa LINE L1 -6436 104 9 25 31 0 0 chr4 166758409 166758441 -35569906 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr4 166758812 166758840 -35569507 + AT_rich Low_complexity Low_complexity 1 28 0 2245 178 29 7 chr4 166761232 166761649 -35566698 - MSTB LTR MaLR 0 426 1 879 223 40 11 chr4 166762985 166763160 -35565187 + MER8 DNA MER2_type 2 181 -58 398 117 0 17 chr4 166763188 166763248 -35565099 - Tigger2 DNA MER2_type -2645 73 15 22 56 0 0 chr4 166765183 166765219 -35563128 + AT_rich Low_complexity Low_complexity 1 36 0 22 88 0 0 chr4 166765225 166765282 -35563065 + AT_rich Low_complexity Low_complexity 1 57 0 1103 206 96 45 chr4 166767287 166767670 -35560677 - L1MD3 LINE L1 0 8036 7650 1442 189 66 3 chr4 166768055 166768373 -35559974 - L1MA4 LINE L1 -4 6296 5959 19986 35 0 0 chr4 166768437 166771631 -35556716 - L1PA3 LINE L1 0 6155 2955 640 296 99 44 chr4 166771838 166772261 -35556086 - MLT1H1 LTR MaLR -118 424 1 2105 112 3 23 chr4 166772319 166772623 -35555724 + AluSx SINE Alu 1 298 -14 193 313 47 0 chr4 166772762 166772826 -35555521 + L2 LINE L2 3246 3312 -1 27 49 0 0 chr4 166772978 166773019 -35555328 + AT_rich Low_complexity Low_complexity 1 41 0 462 282 0 19 chr4 166873318 166873516 -35454831 + BSR/Beta Satellite Satellite 1 194 -19 382 247 26 66 chr4 166873593 166873952 -35454395 + BSR/Beta Satellite Satellite 1 344 -45 1014 213 43 14 chr4 166873973 166874277 -35454070 + BSR/Beta Satellite Satellite 1 312 -52 398 300 14 3 chr4 166874438 166874644 -35453703 + BSR/Beta Satellite Satellite 1 208 -60 499 257 39 27 chr4 166874690 166875116 -35453231 + BSR/Beta Satellite Satellite 1 430 0 1234 263 44 28 chr4 166875174 166876063 -35452284 + BSR/Beta Satellite Satellite 1 903 -4 413 298 7 38 chr4 166876156 166876438 -35451909 + BSR/Beta Satellite Satellite 1 273 -4 543 266 16 17 chr4 166876512 166876735 -35451612 + BSR/Beta Satellite Satellite 1 222 -63 12750 46 2 0 chr4 166876835 166879086 -35449261 - L1PA3 LINE L1 -145 6010 3754 14735 120 30 6 chr4 166879186 166881517 -35446830 - HERV9 LTR ERV1 -6013 2386 1 2292 150 105 0 chr4 166881520 166881941 -35446406 - LTR12 LTR ERV1 0 2438 1 1782 136 3 0 chr4 166881941 166882235 -35446112 - HERVK3 LTR ERVK -5729 1514 1220 1788 235 46 6 chr4 166882549 166883152 -35445195 + L1P3 LINE L1 9 690 -5185 6834 31 1 0 chr4 166883218 166884063 -35444284 - L1PA2 LINE L1 0 6155 5310 4717 40 0 0 chr4 166884058 166884665 -35443682 + L1PA2 LINE L1 4710 5316 -830 * 351 152 0 25 chr4 166884925 166885004 -35443343 - LTR3 LTR ERVK -29 403 327 1176 153 0 0 chr4 166885013 166885209 -35443138 + HERVK3 LTR ERVK 879 1074 -6169 280 356 45 15 chr4 166885477 166885609 -35442738 - L2 LINE L2 -191 3081 2946 257 355 32 24 chr4 166885661 166885785 -35442562 - L2 LINE L2 -473 2841 2717 524 314 154 24 chr4 166885796 166886133 -35442214 - L1ME LINE L1 -434 5687 5307 341 335 106 6 chr4 166886729 166886908 -35441439 - L1MC/D LINE L1 -2239 5569 5373 30 0 0 0 chr4 166887399 166887429 -35440918 + AT_rich Low_complexity Low_complexity 1 30 0 594 186 75 43 chr4 166887641 166887802 -35440545 - Tigger7 DNA MER2_type -19 2468 2303 279 152 0 0 chr4 166888146 166888192 -35440155 - MER41B LTR ERV1 0 635 590 1280 190 76 27 chr4 166888192 166888455 -35439892 - AluSx SINE Alu -36 276 1 2152 149 3 3 chr4 166888455 166888824 -35439523 - MER41A LTR ERV1 -93 461 93 544 105 23 0 chr4 166888935 166889021 -35439326 - LTR12 LTR ERV1 -246 468 381 257 140 67 64 chr4 166889021 166889115 -35439232 - MER51B LTR ERV1 -70 652 227 1315 90 3 228 chr4 166889115 166889483 -35438864 - LTR12 LTR ERV1 -429 285 1 5205 111 0 4 chr4 166889483 166890260 -35438087 - HERV9 LTR ERV1 0 8399 7626 2036 193 115 60 chr4 166890258 166891112 -35437235 - Harlequin LTR ERV1 -5156 1740 840 * 5238 133 14 18 chr4 166891109 166891982 -35436365 - Harlequin LTR ERV1 -3451 4948 4080 2946 108 2 5 chr4 166891989 166892422 -35435925 - Harlequin LTR ERV1 -5260 3139 2708 934 116 0 0 chr4 166892530 166892668 -35435679 + LTR7 LTR ERV1 311 448 -2 1777 166 3 32 chr4 166893412 166893725 -35434622 + AluSq SINE Alu 5 308 -5 22 0 0 0 chr4 166893829 166893851 -35434496 + AT_rich Low_complexity Low_complexity 1 22 0 1701 178 28 0 chr4 166894011 166894297 -35434050 + AluSx SINE Alu 9 302 -10 354 23 0 0 chr4 166895076 166895119 -35433228 + (CA)n Simple_repeat Simple_repeat 2 44 0 216 0 0 0 chr4 166895632 166895656 -35432691 + (A)n Simple_repeat Simple_repeat 1 24 0 531 308 65 44 chr4 166896571 166896751 -35431596 + LTR19C LTR ERV1 403 595 -184 2151 127 0 3 chr4 166896751 166897059 -35431288 + AluY SINE Alu 1 307 -4 531 308 65 44 chr4 166897059 166897216 -35431131 + LTR19C LTR ERV1 595 747 -32 3142 235 47 21 chr4 166897271 166898418 -35429929 + HUERS-P3 LTR ERV1 208 1427 -7492 1084 191 26 0 chr4 166898435 166898624 -35429723 + HUERS-P3 LTR ERV1 3024 3217 -5702 3974 220 46 6 chr4 166898642 166898785 -35429562 + HUERS-P3 LTR ERV1 1453 1589 -7330 432 0 0 0 chr4 166898785 166898833 -35429514 + (TA)n Simple_repeat Simple_repeat 2 49 0 3974 220 46 6 chr4 166898833 166899516 -35428831 + HUERS-P3 LTR ERV1 1589 2312 -6607 229 228 105 0 chr4 166899616 166899673 -35428674 - L1ME LINE L1 -567 5554 5492 6376 15 0 0 chr4 166899982 166900695 -35427652 - L1HS LINE L1 -144 6011 5299 357 154 0 0 chr4 166900695 166900760 -35427587 - MER41A LTR ERV1 -489 65 1 3826 180 21 28 chr4 166901732 166902489 -35425858 - MER4E LTR ERV1 -10 769 18 648 232 47 64 chr4 166902514 166902747 -35425600 - MER61E LTR ERV1 0 569 341 363 260 19 10 chr4 166902917 166903021 -35425326 - LTR25 LTR ERV1 -441 353 249 738 241 10 27 chr4 166904074 166904604 -35423743 + BSR/Beta Satellite Satellite 1 520 -43 402 246 14 135 chr4 166904624 166904839 -35423508 + BSR/Beta Satellite Satellite 69 257 -122 3160 194 18 3 chr4 166904839 166905464 -35422883 + L1P LINE L1 1631 2264 -3882 36962 81 4 0 chr4 166905585 166910449 -35417898 + L1P LINE L1 3 4885 -1261 1401 79 3 6 chr4 166910549 166910835 -35417512 - LTR7 LTR ERV1 -215 235 1 10198 83 9 12 chr4 166910835 166912068 -35416279 - HERVH LTR ERV1 0 7713 6483 2552 94 123 20 chr4 166912068 166912474 -35415873 + LTR7 LTR ERV1 1 448 -2 10198 83 9 12 chr4 166912474 166912638 -35415709 - HERVH LTR ERV1 -1230 6483 6320 * 13442 81 6 3 chr4 166912631 166914440 -35413907 - HERVH LTR ERV1 -1648 6065 4252 * 14897 134 7 24 chr4 166914438 166917284 -35411063 - HERVH LTR ERV1 -1818 5273 1582 321 270 0 0 chr4 166917395 166917469 -35410878 + BSR/Beta Satellite Satellite 116 189 -190 431 81 0 48 chr4 166917567 166917629 -35410718 - HERVK3 LTR ERVK -2505 4738 4680 2414 109 0 0 chr4 166917632 166917962 -35410385 - HERVK3 LTR ERVK -2949 4294 3965 739 228 7 7 chr4 166917951 166918100 -35410247 - HERVK3 LTR ERVK -3559 3684 3536 * 3919 131 3 0 chr4 166918099 166918672 -35409675 - HERVK3 LTR ERVK -4582 2661 2087 3331 159 26 12 chr4 166918672 166919277 -35409070 - LTR6A LTR ERV1 0 564 1 26369 66 39 2 chr4 166919471 166922921 -35405426 + L1P LINE L1 1 3579 -2567 6319 188 22 3 chr4 166923028 166924138 -35404209 + HUERS-P3 LTR ERV1 2509 3639 -5280 42141 48 23 2 chr4 166924146 166930032 -35398315 + L1PA2 LINE L1 1 6010 -145 32978 46 2 0 chr4 166930133 166934931 -35393416 + L1PA2 LINE L1 1347 6152 -3 244 237 0 0 chr4 166934935 166934994 -35393353 + A-rich Low_complexity Low_complexity 1 59 0 671 228 0 34 chr4 166934996 166935325 -35393022 - BSR/Beta Satellite Satellite 0 317 1 608 275 15 46 chr4 166935358 166936238 -35392109 - BSR/Beta Satellite Satellite 0 852 1 1130 277 38 15 chr4 166936261 166937509 -35390838 - BSR/Beta Satellite Satellite -47 1276 1 9297 138 33 17 chr4 166937687 166939279 -35389068 - HERVH LTR ERV1 -4180 1512 1 2893 106 0 102 chr4 166939281 166939780 -35388567 - LTR7 LTR ERV1 -2 448 1 1697 148 21 100 chr4 166940611 166940950 -35387397 - AluSx SINE Alu 0 312 1 31 0 0 0 chr4 166942201 166942232 -35386115 + AT_rich Low_complexity Low_complexity 1 31 0 26679 55 3 4 chr4 166942290 166946467 -35381880 - L1PA3 LINE L1 -4 6151 1981 881 182 13 0 chr4 166946594 166946784 -35381563 + AluSg/x SINE Alu 121 312 0 1166 271 25 14 chr4 166946788 166947326 -35381021 + BSR/Beta Satellite Satellite 1 544 -36 613 267 31 37 chr4 166947347 166949117 -35379230 + BSR/Beta Satellite Satellite 1 1758 -30 980 283 43 35 chr4 166949137 166950058 -35378289 + BSR/Beta Satellite Satellite 1 928 -86 404 270 17 48 chr4 166950079 166950360 -35377987 + BSR/Beta Satellite Satellite 1 272 -24 552 280 22 39 chr4 166950383 166951226 -35377121 + BSR/Beta Satellite Satellite 1 828 -4 597 274 13 29 chr4 166951237 166951658 -35376689 + BSR/Beta Satellite Satellite 1 414 0 1845 171 0 3 chr4 166951693 166951998 -35376349 + AluSc SINE Alu 1 304 -5 1765 199 55 34 chr4 166952193 166952732 -35375615 + MLT2A2 LTR ERVL 1 553 -1 509 278 13 40 chr4 166952734 166953148 -35375199 + BSR/Beta Satellite Satellite 1 402 -30 599 282 33 31 chr4 166953162 166953780 -35374567 + BSR/Beta Satellite Satellite 1 726 -340 856 0 9 9 chr4 166953780 166953885 -35374462 + (GAAA)n Simple_repeat Simple_repeat 4 108 0 599 282 33 31 chr4 166953885 166954227 -35374120 + BSR/Beta Satellite Satellite 726 1066 0 781 234 0 0 chr4 166954277 166954431 -35373916 + BSR/Beta Satellite Satellite 1 154 -225 215 103 26 0 chr4 166954459 166954498 -35373849 + (TA)n Simple_repeat Simple_repeat 1 40 0 3712 252 125 46 chr4 166954501 166955775 -35372572 - MER52A LTR ERV1 -281 1474 10 1249 211 69 10 chr4 166955782 166956133 -35372214 - MER52A-int LTR ERV1 -1 6213 4899 1177 189 5 0 chr4 166956185 166956381 -35371966 - MER52A-int LTR ERV1 -1319 3898 3702 2049 218 19 37 chr4 166956393 166956911 -35371436 - MER52A-int LTR ERV1 -2458 2759 2251 985 71 16 0 chr4 166956912 166957038 -35371309 - L1PA2 LINE L1 -1 6154 6027 13136 64 73 5 chr4 166957138 166958902 -35369445 - L1P LINE L1 -4259 1887 3 4819 178 95 24 chr4 166958913 166959026 -35369321 - MER52A-int LTR ERV1 -2949 4588 4484 1890 146 0 7 chr4 166959026 166959329 -35369018 - AluSx SINE Alu 0 312 19 4819 178 95 24 chr4 166959329 166960356 -35367991 - MER52A-int LTR ERV1 -3053 4484 3367 313 129 29 114 chr4 166960349 166960419 -35367928 - MER52A-int LTR ERV1 -2937 4059 1238 * 514 231 0 9 chr4 166960418 166960526 -35367821 + MER52-int LTR ERV1 980 1086 -6005 737 219 40 30 chr4 166960574 166960775 -35367572 - LTR4 LTR ERV1 -41 555 353 316 118 82 82 chr4 166960831 166960916 -35367431 - MER52A-int LTR ERV1 -6313 778 694 3834 156 10 2 chr4 166960918 166961495 -35366852 - MER52A-int LTR ERV1 -4812 2279 1698 426 59 0 0 chr4 166961518 166961569 -35366778 - MER52A-int LTR ERV1 -5335 1756 1706 2083 225 47 60 chr4 166961690 166961809 -35366538 - MER52A-int LTR ERV1 -6520 571 452 943 39 16 0 chr4 166961809 166961937 -35366410 + (GGAA)n Simple_repeat Simple_repeat 3 132 0 2083 225 47 60 chr4 166961937 166962387 -35365960 - MER52A-int LTR ERV1 -6639 452 9 5061 251 111 51 chr4 166962387 166963965 -35364382 - MER52A LTR ERV1 0 1755 1 618 261 7 45 chr4 166963965 166964479 -35363868 + BSR/Beta Satellite Satellite 1 494 0 595 250 32 21 chr4 166964507 166965302 -35363045 + BSR/Beta Satellite Satellite 1 804 -34 236 363 29 0 chr4 166965345 166965447 -35362900 + BSR/Beta Satellite Satellite 45 149 -3 1187 240 30 85 chr4 166965601 166965763 -35362584 + BSR/Beta Satellite Satellite 1 170 -209 2064 153 0 3 chr4 166965763 166966070 -35362277 + AluSq SINE Alu 1 306 -7 1187 240 30 85 chr4 166966070 166966307 -35362040 + BSR/Beta Satellite Satellite 170 378 -1 1660 161 0 94 chr4 166966404 166966745 -35361602 + AluSq SINE Alu 1 309 -4 31094 70 24 9 chr4 166966878 166971008 -35357339 - L1P LINE L1 -1952 4194 1 765 266 31 28 chr4 166971022 166971308 -35357039 - L1M4 LINE L1 -4898 1644 1358 824 242 79 0 chr4 166971464 166971704 -35356643 + AluJo SINE Alu 54 312 0 597 303 82 5 chr4 166971746 166972136 -35356211 + L1M4c LINE L1 2028 2447 -3937 1168 288 77 25 chr4 166972202 166972837 -35355510 + L1M4c LINE L1 2638 3305 -3077 4299 241 63 23 chr4 166972993 166974476 -35353871 + L1M3f LINE L1 1322 2861 -4065 34066 130 30 19 chr4 166974483 166980800 -35347547 + L1PA6 LINE L1 1430 7673 100 1326 153 61 95 chr4 166980800 166981095 -35347252 + AluSx SINE Alu 1 285 -27 34066 130 30 19 chr4 166981095 166981144 -35347203 + L1PA6 LINE L1 7673 7720 147 1558 220 3 0 chr4 166981144 166981439 -35346908 + AluSx SINE Alu 1 296 -16 34066 130 30 19 chr4 166981439 166981648 -35346699 + L1PA6 LINE L1 7720 7449 -124 2211 110 7 3 chr4 166981648 166981958 -35346389 + AluY SINE Alu 1 311 0 34066 130 30 19 chr4 166981958 166982086 -35346261 + L1PA6 LINE L1 7448 7573 0 1810 243 101 27 chr4 166982091 166982797 -35345550 + L1M3f LINE L1 3529 4279 -3286 438 53 0 0 chr4 166982798 166982855 -35345492 - L1PA3 LINE L1 0 6155 6099 1517 209 37 0 chr4 166982963 166983259 -35345088 + LTR25 LTR ERV1 488 794 0 492 260 8 42 chr4 166983277 166983549 -35344798 - BSR/Beta Satellite Satellite -13 262 1 17970 206 8 15 chr4 166983549 166987029 -35341318 - HERV15 LTR ERV1 -762 7973 4520 2962 253 15 13 chr4 166987073 166988211 -35340136 - HERV15 LTR ERV1 -4344 4082 1704 * 7000 192 52 26 chr4 166988192 166989825 -35338522 - HERV15 LTR ERV1 -7028 1398 1 2888 139 20 26 chr4 166989825 166990322 -35338025 - LTR15 LTR ERV1 0 595 1 810 288 67 29 chr4 166990313 166991151 -35337196 - BSR/Beta Satellite Satellite 0 869 1 * 581 292 29 20 chr4 166991363 166992491 -35335856 - BSR/Beta Satellite Satellite 0 1137 1 4500 283 14 4 chr4 166992508 166993566 -35334781 + MER52-int LTR ERV1 4047 5115 -1976 18706 185 61 12 chr4 166993566 166995521 -35332826 + L1PA8 LINE L1 2 1859 -4628 189 74 0 0 chr4 166995521 166995548 -35332799 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 18706 185 61 12 chr4 166995548 166999758 -35328589 + L1PA8 LINE L1 1859 6487 0 6458 261 38 29 chr4 166999760 167000240 -35328107 + MER52-int LTR ERV1 5118 5592 -3327 1462 228 7 0 chr4 167000240 167000534 -35327813 + AluSx SINE Alu 11 306 -6 6458 261 38 29 chr4 167000534 167001995 -35326352 + MER52-int LTR ERV1 5592 7077 -1842 1963 319 7 15 chr4 167002010 167002592 -35325755 + MER52-int LTR ERV1 7564 8140 -779 5403 162 27 16 chr4 167002592 167003550 -35324797 + LTR5 LTR ERVK 1 969 0 1963 319 7 15 chr4 167003550 167003713 -35324634 + MER52-int LTR ERV1 8140 8303 -616 5509 134 14 0 chr4 167003731 167004789 -35323558 - L1PA8 LINE L1 -10 7600 6534 1889 179 103 26 chr4 167004796 167005253 -35323094 - LTR22B LTR ERVK 0 492 1 39115 159 12 7 chr4 167005253 167012054 -35316293 - HERVK22 LTR ERVK 0 6837 3 1859 198 85 15 chr4 167012056 167012516 -35315831 - LTR22B LTR ERVK 0 492 1 13404 169 24 12 chr4 167012516 167015309 -35313038 - L1PA8 LINE L1 -1052 6532 3707 2164 112 0 0 chr4 167115729 167116023 -35212324 - AluSq SINE Alu -19 294 1 282 333 26 10 chr4 167116185 167116377 -35211970 - L1M4 LINE L1 -1450 4696 4502 22 35 0 0 chr4 167117003 167117032 -35211315 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr4 167117073 167117097 -35211250 + AT_rich Low_complexity Low_complexity 1 24 0 1161 101 25 171 chr4 167117098 167117384 -35210963 - L1MA3 LINE L1 -2 6303 6060 1649 103 4 0 chr4 167117387 167117621 -35210726 - L1PA12 LINE L1 0 6168 5934 3853 110 4 2 chr4 167117621 167118174 -35210173 + L1PA12 LINE L1 5366 5919 -249 473 252 31 16 chr4 167118346 167118473 -35209874 - MER5C DNA MER1_type -192 132 4 2033 134 0 3 chr4 167118967 167119273 -35209074 + AluSq SINE Alu 1 305 -8 21 0 0 0 chr4 167119688 167119709 -35208638 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 167119757 167119778 -35208569 + AT_rich Low_complexity Low_complexity 1 21 0 291 210 14 106 chr4 167120014 167120118 -35208229 - MLT1G1 LTR MaLR 0 576 468 2394 53 0 13 chr4 167121061 167121363 -35206984 + AluY SINE Alu 1 298 -13 2623 306 60 64 chr4 167122120 167124569 -35203778 - L1PA8 LINE L1 -4537 3044 44 1425 193 29 56 chr4 167125291 167125597 -35202750 + Tigger7 DNA MER2_type 10 307 -426 1177 189 52 73 chr4 167125612 167125898 -35202449 - MER67D LTR ERV1 -234 280 1 23 33 0 0 chr4 167128696 167128726 -35199621 + AT_rich Low_complexity Low_complexity 1 30 0 223 181 32 21 chr4 167128903 167128997 -35199350 + (TA)n Simple_repeat Simple_repeat 2 96 0 200 405 28 22 chr4 167129218 167129396 -35198951 + MIR3 SINE MIR 25 203 -5 21 0 0 0 chr4 167131061 167131082 -35197265 + AT_rich Low_complexity Low_complexity 1 21 0 2689 16 0 3 chr4 167131095 167131399 -35196948 - AluYb8 SINE Alu -15 303 1 180 351 78 0 chr4 167131399 167131476 -35196871 - L2 LINE L2 -22 3250 3168 348 24 0 0 chr4 167133423 167133464 -35194883 + (CA)n Simple_repeat Simple_repeat 2 42 0 252 349 91 10 chr4 167133709 167133918 -35194429 - L1MC/D LINE L1 -2192 5616 5391 194 189 0 75 chr4 167134176 167134229 -35194118 - L2 LINE L2 -1594 1720 1672 6957 54 36 4 chr4 167134347 167136055 -35192292 - L1PA7 LINE L1 0 6154 4423 271 314 8 16 chr4 167137195 167137319 -35191028 + L1ME LINE L1 5750 5872 -249 3940 61 2 0 chr4 167138918 167139423 -35188924 + L1PA7 LINE L1 5647 6152 -2 180 0 0 0 chr4 167140083 167140103 -35188244 + (A)n Simple_repeat Simple_repeat 1 20 0 216 0 0 0 chr4 167141239 167141263 -35187084 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2211 68 4 0 chr4 167141265 167141543 -35186804 - AluY SINE Alu -31 280 2 340 339 16 0 chr4 167142083 167142210 -35186137 + MIR SINE MIR 48 176 -86 237 222 189 56 chr4 167142409 167142499 -35185848 - MER5B DNA MER1_type -2 176 75 32 0 0 0 chr4 167142577 167142609 -35185738 + AT_rich Low_complexity Low_complexity 1 32 0 5116 106 11 59 chr4 167142752 167143596 -35184751 + L1PA12 LINE L1 5366 6168 0 3926 257 65 27 chr4 167143761 167145383 -35182964 + L1M4 LINE L1 2597 4279 -1867 733 320 22 31 chr4 167145380 167145793 -35182554 + HAL1 LINE L1 2097 2505 -2 * 260 312 32 64 chr4 167146315 167146472 -35181875 + L2 LINE L2 2559 2710 -604 189 344 56 24 chr4 167146454 167146579 -35181768 + L2 LINE L2 3013 3141 -172 * 1347 191 4 8 chr4 167147485 167147741 -35180606 + L1PB4 LINE L1 5901 6155 -1 22 35 0 0 chr4 167147761 167147790 -35180557 + AT_rich Low_complexity Low_complexity 1 29 0 474 143 0 0 chr4 167148226 167148303 -35180044 - L1PB4 LINE L1 -255 5901 5825 1342 253 127 43 chr4 167148303 167148886 -35179461 + LTR27 LTR ERV1 1 634 -2 390 21 0 0 chr4 167149045 167149092 -35179255 + (TC)n Simple_repeat Simple_repeat 2 48 0 2672 181 67 48 chr4 167149099 167149707 -35178640 + LTR27-int LTR ERV1 226 845 -6246 3062 203 34 64 chr4 167149711 167150449 -35177898 + LTR28-int LTR ERV1 4067 4782 -435 398 221 0 23 chr4 167150456 167150542 -35177805 + LTR28-int LTR ERV1 3912 3995 -885 3891 157 47 34 chr4 167150542 167151659 -35176688 + LTR28-int LTR ERV1 609 2899 -4004 13070 204 45 21 chr4 167151660 167154932 -35173415 + LTR28-int LTR ERV1 2616 6995 -1 548 232 7 29 chr4 167154937 167155075 -35173272 + LTR28 LTR ERV1 8 142 -878 * 709 235 48 52 chr4 167155074 167155304 -35173043 + LTR27 LTR ERV1 408 636 0 257 80 40 0 chr4 167155307 167155357 -35172990 - L1M1 LINE L1 -472 5828 5777 420 163 11 11 chr4 167155600 167155692 -35172655 + MER53 DNA DNA 4 95 -94 347 200 12 0 chr4 167155616 167155701 -35172646 - MER53 DNA DNA -8 181 96 * 450 176 0 0 chr4 167155845 167155930 -35172417 + L1MC2 LINE L1 6002 6086 -258 24 32 0 0 chr4 167157257 167157288 -35171059 + AT_rich Low_complexity Low_complexity 1 31 0 308 331 28 52 chr4 167158288 167158539 -35169808 + L1ME LINE L1 5266 5510 -652 265 267 0 0 chr4 167158655 167158715 -35169632 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 1925 157 0 3 chr4 167159008 167159307 -35169040 - AluSx SINE Alu -14 298 1 23 33 0 0 chr4 167160428 167160458 -35167889 + AT_rich Low_complexity Low_complexity 1 30 0 241 363 35 9 chr4 167160576 167160689 -35167658 - MIR3 SINE MIR -11 197 82 21 0 0 0 chr4 167162636 167162657 -35165690 + AT_rich Low_complexity Low_complexity 1 21 0 7358 94 6 7 chr4 167162895 167164628 -35163719 - L1PA7 LINE L1 -4 6150 4418 2049 129 10 0 chr4 167164628 167164923 -35163424 - AluSq SINE Alu -15 298 1 7358 94 6 7 chr4 167164923 167165034 -35163313 - L1PA7 LINE L1 -1736 4418 4308 611 57 11 0 chr4 167165191 167165279 -35163068 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 1694 261 78 43 chr4 167165294 167166029 -35162318 - L1ME1 LINE L1 -5 6095 5336 1803 129 3 53 chr4 167166058 167166376 -35161971 - AluSc SINE Alu -7 302 1 348 252 118 0 chr4 167166432 167166567 -35161780 - L1ME1 LINE L1 -2397 3683 3533 2216 244 99 52 chr4 167166658 167167920 -35160427 - L1ME1 LINE L1 -2558 3522 2202 1374 298 119 30 chr4 167167967 167169642 -35158705 - L1ME1 LINE L1 -3961 2119 330 249 289 138 6 chr4 167169806 167169965 -35158382 - L1ME1 LINE L1 -5874 196 17 1976 114 38 3 chr4 167170218 167170508 -35157839 - AluSq SINE Alu -13 300 1 2256 108 0 3 chr4 167170677 167170991 -35157356 - AluSq SINE Alu 0 313 1 253 312 113 21 chr4 167171442 167171628 -35156719 + LTR33 LTR ERVL 1 203 -318 379 217 85 0 chr4 167172570 167172676 -35155671 + Charlie7 DNA MER1_type 375 489 -2123 203 286 57 0 chr4 167172698 167172768 -35155579 - L2 LINE L2 -1310 2004 1931 7688 22 0 0 chr4 167174030 167174960 -35153387 - L1PA2 LINE L1 -5 6150 5221 10469 30 2 0 chr4 167174960 167176222 -35152125 + L1PA2 LINE L1 3978 5242 -904 3050 206 33 64 chr4 167176359 167177310 -35151037 - L1MC3 LINE L1 -16 7769 6824 1397 143 4 4 chr4 167178092 167178330 -35150017 + L1MA4 LINE L1 6050 6287 -13 246 325 72 6 chr4 167178939 167179105 -35149242 + MARNA DNA Mariner 73 249 -337 814 144 19 25 chr4 167180183 167180343 -35148004 + L1MB1 LINE L1 6010 6168 0 313 347 32 23 chr4 167182838 167183054 -35145293 + ERVL LTR ERVL 3714 3931 -1833 25 0 0 0 chr4 167183137 167183162 -35145185 + AT_rich Low_complexity Low_complexity 1 25 0 231 153 24 12 chr4 167183224 167183309 -35145038 + (TCTA)n Simple_repeat Simple_repeat 3 88 0 1747 168 22 42 chr4 167184263 167184621 -35143726 - MLT1A1 LTR MaLR -11 354 4 192 115 16 33 chr4 167184720 167184781 -35143566 + (TTATA)n Simple_repeat Simple_repeat 1 60 0 21 82 0 0 chr4 167184997 167185046 -35143301 + AT_rich Low_complexity Low_complexity 1 49 0 1057 304 70 20 chr4 167185508 167185948 -35142399 - LTR16B LTR ERVL -2 462 1 3029 166 72 11 chr4 167186072 167186679 -35141668 + MER73 LTR ERVL 1 644 0 496 369 52 29 chr4 167186886 167187403 -35140944 - HAL1b LINE L1 -813 535 7 1790 177 82 51 chr4 167191261 167191713 -35136634 + MER31B LTR ERV1 1 466 0 225 347 11 0 chr4 167191743 167191838 -35136509 - L3 LINE CR1 -836 741 646 1364 232 63 67 chr4 167191977 167192469 -35135878 - L1MC4a LINE L1 -1272 6536 6047 23 54 0 0 chr4 167192469 167192506 -35135841 + AT_rich Low_complexity Low_complexity 1 37 0 1515 193 4 4 chr4 167192506 167192786 -35135561 - AluJo SINE Alu -32 280 1 2269 106 0 0 chr4 167192878 167193171 -35135176 - AluSg SINE Alu -17 293 1 735 332 31 44 chr4 167193340 167193882 -35134465 - L1M3b LINE L1 -5124 1157 623 * 2626 262 20 25 chr4 167193849 167194583 -35133764 - L1M3b LINE L1 -5540 741 11 22 70 0 0 chr4 167194590 167194633 -35133714 + AT_rich Low_complexity Low_complexity 1 43 0 651 267 21 21 chr4 167195338 167195578 -35132769 + L1MC/D LINE L1 5298 5537 -2271 435 324 53 29 chr4 167195578 167195822 -35132525 - L1MC4a LINE L1 -2032 5776 5527 1867 158 0 0 chr4 167196043 167196327 -35132020 - AluSg SINE Alu -14 296 13 1771 122 61 7 chr4 167196345 167196624 -35131723 + AluSx SINE Alu 1 294 -18 189 371 21 0 chr4 167196850 167196947 -35131400 - L3 LINE CR1 -49 1528 1430 243 317 92 33 chr4 167196970 167197090 -35131257 + MIR SINE MIR 48 174 -88 413 277 39 0 chr4 167197406 167197536 -35130811 - L3 LINE CR1 -163 1414 1280 180 111 0 0 chr4 167197949 167197976 -35130371 + (TA)n Simple_repeat Simple_repeat 1 27 0 2535 43 3 0 chr4 167198472 167198772 -35129575 - AluY SINE Alu -10 301 1 204 364 20 75 chr4 167198818 167199071 -35129276 - L2 LINE L2 -182 3090 2852 186 43 0 0 chr4 167199111 167199134 -35129213 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1895 180 43 22 chr4 167199961 167199986 -35128361 - MLT2A2 LTR ERVL -31 499 476 297 0 0 0 chr4 167199986 167200019 -35128328 + (GA)n Simple_repeat Simple_repeat 1 33 0 1895 180 43 22 chr4 167200019 167200502 -35127845 - MLT2A2 LTR ERVL -54 476 3 465 357 28 28 chr4 167201340 167201589 -35126758 + MIR SINE MIR 2 250 -12 1031 241 63 46 chr4 167201743 167202137 -35126210 - LTR27 LTR ERV1 0 636 236 8267 133 22 11 chr4 167202149 167203708 -35124639 - LTR27-int LTR ERV1 -31 7060 2675 2131 98 0 0 chr4 167203711 167203986 -35124361 - AluY SINE Alu -36 275 1 3973 176 27 30 chr4 167203986 167206431 -35121916 - LTR27-int LTR ERV1 -299 4918 609 1493 229 127 7 chr4 167206435 167206488 -35121859 - LTR27-int LTR ERV1 -6246 845 800 252 0 0 0 chr4 167206488 167206516 -35121831 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1493 229 127 7 chr4 167206516 167206873 -35121474 - LTR27-int LTR ERV1 -6291 800 386 451 240 106 94 chr4 167206840 167207094 -35121253 - LTR27-int LTR ERV1 -6833 258 2 * 2384 215 55 37 chr4 167207097 167207715 -35120632 - LTR27 LTR ERV1 0 636 8 2083 123 0 0 chr4 167207793 167208086 -35120261 + AluSg1 SINE Alu 1 293 -16 217 275 200 0 chr4 167208167 167208247 -35120100 - L2 LINE L2 -4 3268 3173 1868 221 45 18 chr4 167208853 167209302 -35119045 + LOR1b LTR ERV1 1 461 0 193 295 33 0 chr4 167209698 167209759 -35118588 - MIR3 SINE MIR -17 191 129 503 235 61 0 chr4 167210633 167210765 -35117582 - Charlie1 DNA MER1_type 0 2761 2622 * 728 275 25 17 chr4 167210746 167210982 -35117365 - Charlie1 DNA MER1_type -2517 244 7 22 35 0 0 chr4 167211034 167211063 -35117284 + AT_rich Low_complexity Low_complexity 1 29 0 2394 89 0 6 chr4 167211159 167211473 -35116874 + AluSx SINE Alu 1 312 0 1973 150 35 44 chr4 167211822 167212189 -35116158 + THE1B LTR MaLR 1 364 0 207 328 0 0 chr4 167212827 167212885 -35115462 + CT-rich Low_complexity Low_complexity 2 59 0 4254 194 34 23 chr4 167212985 167214078 -35114269 - L1MA4 LINE L1 -4 7715 6609 248 135 96 0 chr4 167214184 167214236 -35114111 - L1MA4 LINE L1 -960 6605 6549 1516 127 134 125 chr4 167214236 167214660 -35113687 + MSTA LTR MaLR 1 428 0 6697 163 28 51 chr4 167214662 167215015 -35113332 + MSTA-int LTR MaLR 3 363 -1217 1210 138 25 67 chr4 167215015 167215160 -35113187 + MER30 DNA MER1_type 2 135 -95 2096 132 0 0 chr4 167215160 167215449 -35112898 - AluSc SINE Alu -20 289 1 1210 138 25 67 chr4 167215449 167215542 -35112805 + MER30 DNA MER1_type 135 230 0 6697 163 28 51 chr4 167215542 167215675 -35112672 + MSTA-int LTR MaLR 363 498 -1082 2194 138 31 3 chr4 167215675 167216029 -35112318 - THE1B LTR MaLR 0 364 1 6697 163 28 51 chr4 167216029 167216846 -35111501 + MSTA-int LTR MaLR 498 1277 -303 2086 155 8 8 chr4 167216853 167217208 -35111139 - THE1A LTR MaLR 0 355 1 11189 110 8 4 chr4 167217210 167218777 -35109570 - THE1A-int LTR MaLR -5 1575 2 1920 153 9 16 chr4 167218778 167219098 -35109249 - THE1A LTR MaLR 0 355 38 572 146 10 29 chr4 167219099 167219202 -35109145 - THE1B LTR MaLR -263 101 1 1726 154 7 4 chr4 167219206 167219485 -35108862 + MSTA-int LTR MaLR 1282 1561 -19 1558 153 156 36 chr4 167219514 167219847 -35108500 + MSTA LTR MaLR 56 428 0 8758 190 26 18 chr4 167219847 167220820 -35107527 - L1MA4 LINE L1 -1012 6553 5590 1996 143 13 0 chr4 167220820 167221128 -35107219 - AluSq SINE Alu -1 312 1 8758 190 26 18 chr4 167221128 167222126 -35106221 - L1MA4 LINE L1 -1975 5590 4565 1709 163 10 61 chr4 167222139 167222531 -35105816 - L1PB4 LINE L1 -4 6152 5781 417 153 0 0 chr4 167222531 167222603 -35105744 + (TA)n Simple_repeat Simple_repeat 2 73 0 1791 127 7 14 chr4 167222607 167222898 -35105449 - L1PB4 LINE L1 -364 5792 5504 4034 234 18 20 chr4 167222903 167224402 -35103945 - L1MA4 LINE L1 -2989 4576 3075 1355 227 21 7 chr4 167224399 167224681 -35103666 - L1MA4 LINE L1 -5026 1539 1254 * 2165 116 3 0 chr4 167224948 167225241 -35103106 + AluSx SINE Alu 1 294 -18 4558 236 110 62 chr4 167225245 167225320 -35103027 + L1MC4a LINE L1 5612 5682 -2126 1791 157 25 0 chr4 167225320 167225601 -35102746 + AluSx SINE Alu 21 308 -4 4558 236 110 62 chr4 167225601 167227621 -35100726 + L1MC4a LINE L1 5682 7808 0 32 26 0 0 chr4 167227680 167227719 -35100628 + AT_rich Low_complexity Low_complexity 1 39 0 334 212 147 35 chr4 167227731 167227901 -35100446 + L1ME4a LINE L1 5769 5957 -164 217 106 21 21 chr4 167227975 167228022 -35100325 + (TTC)n Simple_repeat Simple_repeat 2 48 0 198 0 0 0 chr4 167228050 167228072 -35100275 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 1385 62 0 0 chr4 167228298 167228494 -35099853 + L1PA4 LINE L1 5965 6160 0 2213 143 16 16 chr4 167228751 167229122 -35099225 + THE1C LTR MaLR 5 375 0 10053 121 43 6 chr4 167229122 167230645 -35097702 + THE1C-int LTR MaLR 1 1580 0 1906 114 92 53 chr4 167230645 167231004 -35097343 + THE1C LTR MaLR 1 373 -2 21 0 0 0 chr4 167231055 167231076 -35097271 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 167231207 167231232 -35097115 + AT_rich Low_complexity Low_complexity 1 25 0 2005 38 0 0 chr4 167231299 167231535 -35096812 - AluY SINE Alu -75 236 1 23 0 0 0 chr4 167232378 167232401 -35095946 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr4 167232494 167232536 -35095811 + AT_rich Low_complexity Low_complexity 1 42 0 202 236 55 18 chr4 167233245 167233300 -35095047 + L2 LINE L2 2683 2739 -575 284 359 0 17 chr4 167234076 167234193 -35094154 + L2 LINE L2 2625 2739 -575 240 348 20 109 chr4 167234327 167234620 -35093727 + L2 LINE L2 2937 3203 -69 1964 220 21 4 chr4 167234720 167235193 -35093154 - L1MB7 LINE L1 -9 6175 5695 1748 181 75 61 chr4 167235798 167236240 -35092107 + MER74C LTR ERVL 13 460 0 2018 312 65 49 chr4 167236250 167237175 -35091172 + HERVL74 LTR ERVL 11 950 -4735 685 263 6 0 chr4 167238298 167238473 -35089874 + HERVL74 LTR ERVL 5475 5650 -35 1831 152 3 0 chr4 167238473 167238756 -35089591 + AluJb SINE Alu 13 296 -16 1032 232 20 56 chr4 167238800 167239186 -35089161 + MER74C LTR ERVL 10 460 0 311 356 61 8 chr4 167239854 167239986 -35088361 - MER5B DNA MER1_type 0 178 40 21 36 0 0 chr4 167241133 167241161 -35087186 + AT_rich Low_complexity Low_complexity 1 28 0 198 167 0 0 chr4 167241883 167241919 -35086428 + (TA)n Simple_repeat Simple_repeat 2 37 0 235 306 177 19 chr4 167241991 167242200 -35086147 - MIR SINE MIR 0 262 21 200 139 0 47 chr4 167243026 167243069 -35085278 + (TG)n Simple_repeat Simple_repeat 2 42 0 1350 218 29 62 chr4 167243951 167244368 -35083979 - MLT2D LTR ERVL 0 414 12 500 374 20 0 chr4 167245735 167245930 -35082417 + MIR SINE MIR 8 206 -56 39 38 0 0 chr4 167245970 167246023 -35082324 + AT_rich Low_complexity Low_complexity 1 53 0 1583 120 120 41 chr4 167246324 167246613 -35081734 + AluSx SINE Alu 1 310 0 662 239 38 0 chr4 167246993 167247152 -35081195 + MER97b DNA MER1_type? 51 215 -838 785 291 19 0 chr4 167247154 167247364 -35080983 + MER97c DNA MER1_type? 354 567 -523 2224 159 8 20 chr4 167247613 167248003 -35080344 - MLT1B LTR MaLR -5 385 1 321 302 13 7 chr4 167248255 167248380 -35079967 + MIR SINE MIR 22 147 -64 * 350 282 234 8 chr4 167248378 167248626 -35079721 - L2 LINE L2 0 3313 3010 34 0 0 0 chr4 167249682 167249716 -35078631 + AT_rich Low_complexity Low_complexity 1 34 0 26 30 0 0 chr4 167249786 167249819 -35078528 + AT_rich Low_complexity Low_complexity 1 33 0 499 183 56 8 chr4 167250696 167250822 -35077525 + L1MC1 LINE L1 6202 6333 0 330 344 86 13 chr4 167251104 167251255 -35077092 + MIR SINE MIR 51 212 -50 350 343 47 56 chr4 167252233 167252446 -35075901 - MIR SINE MIR -18 244 34 180 0 0 0 chr4 167252446 167252466 -35075881 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr4 167252657 167252681 -35075666 + AT_rich Low_complexity Low_complexity 1 24 0 4372 177 52 33 chr4 167252831 167254421 -35073926 + MER52A LTR ERV1 1 1755 0 362 258 32 113 chr4 167256126 167256312 -35072035 - MIR3 SINE MIR -21 187 17 21 36 0 0 chr4 167257056 167257084 -35071263 + AT_rich Low_complexity Low_complexity 1 28 0 828 319 110 14 chr4 167259169 167259743 -35068604 - L2 LINE L2 -1071 2243 1615 258 302 19 38 chr4 167259752 167259858 -35068489 - L2 LINE L2 -2029 1285 1182 27 62 0 0 chr4 167260112 167260160 -35068187 + AT_rich Low_complexity Low_complexity 1 48 0 2368 64 0 0 chr4 167260442 167260737 -35067610 - AluY SINE Alu 0 311 17 1366 215 83 11 chr4 167261576 167261925 -35066422 + MLT1A2 LTR MaLR 1 374 0 382 283 133 65 chr4 167262003 167262370 -35065977 - L1MC4a LINE L1 -1825 5983 5592 617 275 79 33 chr4 167262533 167262737 -35065610 - L1MC4a LINE L1 -892 5254 5261 2138 133 17 8 chr4 167262737 167263089 -35065258 - THE1A LTR MaLR 0 355 1 617 275 79 33 chr4 167263089 167263400 -35064947 - L1MC4a LINE L1 -884 5262 4967 3667 235 45 14 chr4 167263664 167264843 -35063504 - L1 LINE L1 -2559 3587 2373 1470 174 31 4 chr4 167264844 167265103 -35063244 - L1PA16 LINE L1 -20 6146 5881 369 299 65 30 chr4 167265348 167265549 -35062798 - L1MC4a LINE L1 -1797 4349 4142 21 0 0 0 chr4 167265652 167265673 -35062674 + AT_rich Low_complexity Low_complexity 1 21 0 589 297 105 45 chr4 167266708 167266817 -35061530 - LTR33 LTR ERVL -20 501 400 620 62 0 0 chr4 167266817 167266897 -35061450 - MADE1 DNA Mariner 0 80 1 2127 163 75 12 chr4 167266904 167267304 -35061043 - MSTB LTR MaLR -1 425 1 589 297 105 45 chr4 167267304 167267651 -35060696 - LTR33 LTR ERVL -126 395 9 306 209 58 65 chr4 167268742 167268881 -35059466 - LTR37A LTR ERV1 -2 424 287 719 100 9 0 chr4 167269143 167269253 -35059094 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 399 317 39 17 chr4 167269742 167269922 -35058425 + MLT1J LTR MaLR 328 511 0 381 257 134 40 chr4 167270307 167270509 -35057838 - L1MC5 LINE L1 -30 7931 7711 826 263 71 44 chr4 167270605 167271085 -35057262 - L1MC5 LINE L1 -476 7485 6993 853 244 73 57 chr4 167271110 167271543 -35056804 - MER39 LTR ERV1 0 707 67 790 256 15 15 chr4 167271590 167271789 -35056558 - MER58A DNA MER1_type -25 199 1 1323 198 99 0 chr4 167271897 167272190 -35056157 - L1MC1 LINE L1 -8 6325 6004 784 248 16 88 chr4 167272209 167272515 -35055832 - L1MC5 LINE L1 -1067 6894 6611 416 318 153 31 chr4 167273566 167273789 -35054558 + MIR SINE MIR 5 254 -8 3310 71 0 22 chr4 167274258 167274706 -35053641 + L1PA7 LINE L1 5683 6120 -34 2446 89 96 19 chr4 167275249 167275665 -35052682 - LTR7 LTR ERV1 -2 448 1 444 263 39 121 chr4 167275844 167276076 -35052271 - MIR SINE MIR -47 215 3 1307 211 64 70 chr4 167277799 167278268 -35050079 - MER31B LTR ERV1 0 466 1 300 302 62 0 chr4 167278470 167278599 -35049748 + MIR SINE MIR 65 201 -61 21 0 0 0 chr4 167279543 167279564 -35048783 + AT_rich Low_complexity Low_complexity 1 21 0 811 276 76 50 chr4 167280696 167281198 -35047149 + MLT1F1 LTR MaLR 1 562 -5 1440 246 65 61 chr4 167281202 167281945 -35046402 + L1M4 LINE L1 2411 3156 -2990 1739 279 51 41 chr4 167282101 167282710 -35045637 + L1M3e LINE L1 6 620 -6410 1101 258 27 11 chr4 167282768 167283292 -35045055 + L1M3e LINE L1 1859 2410 -4627 5172 132 25 52 chr4 167283296 167284285 -35044062 + L1PA16 LINE L1 5203 6165 -1 5224 167 14 16 chr4 167284454 167286253 -35042094 + L1MA8 LINE L1 4472 6276 -15 29 70 0 0 chr4 167286255 167286312 -35042035 + AT_rich Low_complexity Low_complexity 1 57 0 505 291 175 28 chr4 167286451 167287252 -35041095 + L1M3e LINE L1 3863 4781 -2325 246 32 0 0 chr4 167287569 167287600 -35040747 + (TG)n Simple_repeat Simple_repeat 2 32 0 393 329 109 22 chr4 167287691 167288095 -35040252 + L1ME LINE L1 5382 5820 -350 194 328 90 37 chr4 167288375 167288509 -35039838 - MIR3 SINE MIR -51 157 17 22 35 0 0 chr4 167288955 167288984 -35039363 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 167289063 167289086 -35039261 + AT_rich Low_complexity Low_complexity 1 23 0 34 24 0 0 chr4 167289906 167289947 -35038400 + AT_rich Low_complexity Low_complexity 1 41 0 231 271 0 0 chr4 167289982 167290030 -35038317 + L2 LINE L2 3249 3296 -17 1967 129 0 7 chr4 167290697 167291108 -35037239 - AluSx SINE Alu 0 409 1 223 364 70 16 chr4 167292258 167292445 -35035902 + L2 LINE L2 2898 3094 -178 27 29 0 0 chr4 167292930 167292964 -35035383 + AT_rich Low_complexity Low_complexity 1 34 0 207 0 0 0 chr4 167293272 167293295 -35035052 + (TG)n Simple_repeat Simple_repeat 2 24 0 224 200 0 33 chr4 167293295 167293355 -35034992 + (TA)n Simple_repeat Simple_repeat 2 59 0 24 0 0 0 chr4 167293953 167293977 -35034370 + AT_rich Low_complexity Low_complexity 1 24 0 1482 138 0 4 chr4 167294715 167294968 -35033379 - AluY SINE Alu 0 311 60 200 139 0 47 chr4 167295487 167295530 -35032817 + (CA)n Simple_repeat Simple_repeat 2 42 0 1014 192 5 10 chr4 167296648 167296841 -35031506 + AluJo SINE Alu 101 292 -20 453 97 0 0 chr4 167297056 167297128 -35031219 + (TA)n Simple_repeat Simple_repeat 2 73 0 228 35 0 0 chr4 167297130 167297159 -35031188 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 249 108 0 0 chr4 167297158 167297195 -35031152 + (TA)n Simple_repeat Simple_repeat 1 37 0 23 33 0 0 chr4 167297348 167297378 -35030969 + AT_rich Low_complexity Low_complexity 1 30 0 211 234 0 0 chr4 167297420 167297467 -35030880 + (TA)n Simple_repeat Simple_repeat 2 48 0 1631 130 16 0 chr4 167301824 167302071 -35026276 - AluSg SINE Alu -59 251 1 617 298 63 21 chr4 167302140 167302378 -35025969 + MIR SINE MIR 5 252 -10 2173 97 0 29 chr4 167302742 167303053 -35025294 + AluSg SINE Alu 1 302 -8 22 0 0 0 chr4 167303079 167303101 -35025246 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 167303441 167303472 -35024875 + AT_rich Low_complexity Low_complexity 1 31 0 630 289 43 17 chr4 167303761 167303996 -35024351 - MER97a DNA MER1_type? -519 375 135 498 227 65 39 chr4 167305343 167305497 -35022850 - MIR SINE MIR -13 249 92 749 356 67 31 chr4 167305699 167306448 -35021899 + L1MEd LINE L1 481 1256 -4863 2217 85 0 3 chr4 167306466 167306782 -35021565 + AluSx SINE Alu 1 315 0 17515 163 37 12 chr4 167306786 167309560 -35018787 + L1M1 LINE L1 17 2879 -4686 273 57 0 0 chr4 167309560 167309595 -35018752 + (CA)n Simple_repeat Simple_repeat 2 36 0 17515 163 37 12 chr4 167309595 167309916 -35018431 + L1M1 LINE L1 2879 3190 -4375 5838 61 12 12 chr4 167309917 167310669 -35017678 - SVA Other Other 0 1386 635 2486 64 0 3 chr4 167311006 167311318 -35017029 - AluY SINE Alu 0 311 1 361 277 43 2 chr4 167312169 167312308 -35016039 - MER5A DNA MER1_type 0 189 16 371 211 14 0 chr4 167312545 167312616 -35015731 + MER94 DNA DNA 14 85 -49 1746 160 9 38 chr4 167312998 167313317 -35015030 + AluSx SINE Alu 1 310 -2 342 0 0 0 chr4 167314226 167314264 -35014083 + (CA)n Simple_repeat Simple_repeat 2 39 0 1867 263 62 8 chr4 167314470 167315066 -35013281 - L1MC4a LINE L1 0 7808 7181 1836 165 55 6 chr4 167315067 167315471 -35012876 - LTR24 LTR ERV1 0 467 5 339 379 44 14 chr4 167315645 167315938 -35012409 - L1M4 LINE L1 -3315 2831 2530 2109 160 69 29 chr4 167316498 167316916 -35011431 - MER4E LTR ERV1 0 779 345 281 81 0 0 chr4 167316909 167316946 -35011401 - MER4D LTR ERV1 -653 219 183 * 337 211 8 78 chr4 167316983 167317111 -35011236 - L1ME3 LINE L1 -81 6081 5963 6241 38 0 4 chr4 167317172 167317933 -35010414 - L1PA4 LINE L1 -6 6149 5392 * 18323 39 0 0 chr4 167317921 167320179 -35008168 + L1PA4 LINE L1 3133 5390 -756 996 156 26 10 chr4 167320179 167320371 -35007976 - MER4D LTR ERV1 -708 195 1 180 234 0 0 chr4 167320522 167320569 -35007778 + (TA)n Simple_repeat Simple_repeat 1 47 0 25 31 0 0 chr4 167322798 167322830 -35005517 + AT_rich Low_complexity Low_complexity 1 32 0 24 67 0 0 chr4 167322951 167322996 -35005351 + AT_rich Low_complexity Low_complexity 1 45 0 523 139 47 70 chr4 167323182 167323238 -35005109 + MIR SINE MIR 29 85 -177 2351 154 26 14 chr4 167323238 167323659 -35004688 + MSTB LTR MaLR 1 426 0 523 139 47 70 chr4 167323659 167323731 -35004616 + MIR SINE MIR 85 154 -108 21 57 0 0 chr4 167323810 167323845 -35004502 + AT_rich Low_complexity Low_complexity 1 35 0 383 366 29 17 chr4 167324162 167324334 -35004013 + L2 LINE L2 3097 3270 -2 524 249 46 46 chr4 167324435 167324608 -35003739 + MER5B DNA MER1_type 1 173 -5 23 33 0 0 chr4 167324961 167324991 -35003356 + AT_rich Low_complexity Low_complexity 1 30 0 1602 184 92 3 chr4 167325079 167325395 -35002952 + MER2 DNA MER2_type 2 345 0 376 276 149 0 chr4 167326728 167326887 -35001460 - MER5A DNA MER1_type 0 189 4 251 261 144 18 chr4 167328625 167328736 -34999611 - MIR SINE MIR -111 151 27 23 33 0 0 chr4 167328754 167328784 -34999563 + AT_rich Low_complexity Low_complexity 1 30 0 356 278 30 71 chr4 167328889 167329058 -34999289 + MIR SINE MIR 97 258 -4 198 303 112 53 chr4 167329083 167329235 -34999112 - MIR SINE MIR -69 193 33 23 68 0 0 chr4 167329729 167329773 -34998574 + AT_rich Low_complexity Low_complexity 1 44 0 1646 192 79 14 chr4 167330281 167330635 -34997712 - MSTA LTR MaLR 0 428 52 21 57 0 0 chr4 167332389 167332424 -34995923 + AT_rich Low_complexity Low_complexity 1 35 0 366 23 0 0 chr4 167333137 167333180 -34995167 + (CA)n Simple_repeat Simple_repeat 2 44 0 4408 31 0 0 chr4 167333373 167333896 -34994451 + L1PA3 LINE L1 5630 6152 -3 21 0 0 0 chr4 167333896 167333917 -34994430 + AT_rich Low_complexity Low_complexity 1 21 0 26 82 0 0 chr4 167334069 167334130 -34994217 + AT_rich Low_complexity Low_complexity 1 61 0 382 311 66 40 chr4 167334722 167335297 -34993050 + L1MEc LINE L1 786 1375 -5021 25 75 0 0 chr4 167335664 167335717 -34992630 + AT_rich Low_complexity Low_complexity 1 53 0 282 224 17 0 chr4 167335926 167335984 -34992363 + Charlie5 DNA MER1_type 1 59 -2553 532 301 93 21 chr4 167336013 167336542 -34991805 - L1M4 LINE L1 -3444 2702 2136 2838 163 20 37 chr4 167336647 167337681 -34990666 - L1 LINE L1 -3373 4192 3182 21 36 0 0 chr4 167337900 167337928 -34990419 + GC_rich Low_complexity Low_complexity 1 28 0 2647 82 38 90 chr4 167337978 167338479 -34989868 + SVA Other Other 393 867 -519 362 276 0 0 chr4 167338586 167338667 -34989680 - AluJ/FLAM SINE Alu -236 66 1 184 239 22 0 chr4 167338807 167338853 -34989494 - MIR SINE MIR -13 249 203 817 308 82 24 chr4 167338916 167339805 -34988542 - L1M4 LINE L1 -1153 4993 4053 1458 136 68 16 chr4 167339850 167340100 -34988247 - MLT1A1 LTR MaLR 0 365 103 694 257 0 0 chr4 167340116 167340252 -34988095 - MLT1I LTR MaLR -37 372 237 5401 88 9 5 chr4 167340258 167341010 -34987337 + L1PA11 LINE L1 5420 6174 0 338 352 94 6 chr4 167341066 167341225 -34987122 - MLT1I LTR MaLR -175 234 62 264 333 73 5 chr4 167341346 167341550 -34986797 - L1M4 LINE L1 -2370 3776 3559 391 319 89 52 chr4 167341553 167341598 -34986749 - L1M4 LINE L1 -2610 3536 3494 490 123 57 19 chr4 167341598 167341704 -34986643 + L1PA15 LINE L1 6051 6160 -5 391 319 89 52 chr4 167341704 167342375 -34985972 - L1M4 LINE L1 -2652 3494 2793 198 138 0 0 chr4 167342756 167342785 -34985562 - L2 LINE L2 -36 3236 3208 507 265 158 10 chr4 167343024 167343220 -34985127 - MIR SINE MIR -24 238 14 203 373 9 18 chr4 167343702 167343812 -34984535 + MIR3 SINE MIR 56 164 -44 207 0 0 0 chr4 167344378 167344401 -34983946 + (T)n Simple_repeat Simple_repeat 1 23 0 342 45 0 0 chr4 167346484 167346528 -34981819 + (CA)n Simple_repeat Simple_repeat 2 45 0 336 291 71 0 chr4 167346923 167347064 -34981283 + L1M4 LINE L1 4898 5048 -1098 816 219 6 6 chr4 167347801 167347965 -34980382 - FRAM SINE Alu -2 164 1 978 184 57 33 chr4 167348773 167348985 -34979362 - MLT1A2 LTR MaLR -157 217 1 246 329 24 0 chr4 167349375 167349457 -34978890 - MIR SINE MIR -66 142 59 237 272 95 56 chr4 167349666 167350130 -34978217 - L1M4 LINE L1 -1487 4659 4178 1400 123 14 0 chr4 167351612 167351831 -34976516 - L1PA12 LINE L1 -3 6165 5944 307 282 122 64 chr4 167351963 167352151 -34976196 - HAL1 LINE L1 -1157 1350 1152 486 192 39 147 chr4 167352702 167352899 -34975448 + MER96B DNA MER1_type? 162 320 -97 1555 111 0 0 chr4 167352899 167353106 -34975241 - AluSx SINE Alu -105 207 1 486 192 39 147 chr4 167353106 167353194 -34975153 + MER96B DNA MER1_type? 320 416 -1 215 167 12 36 chr4 167354339 167354423 -34973924 + (TA)n Simple_repeat Simple_repeat 2 83 0 214 267 27 13 chr4 167355351 167355426 -34972921 + (TA)n Simple_repeat Simple_repeat 1 76 0 414 0 0 0 chr4 167356788 167356834 -34971513 + (TG)n Simple_repeat Simple_repeat 2 47 0 22 35 0 0 chr4 167357856 167357885 -34970462 + AT_rich Low_complexity Low_complexity 1 29 0 1777 148 85 6 chr4 167358189 167358520 -34969827 - MSTA LTR MaLR -2 426 70 1867 131 98 18 chr4 167358520 167358857 -34969490 - THE1B LTR MaLR 0 364 1 10845 103 21 0 chr4 167358857 167360405 -34967942 - THE1B-int LTR MaLR 0 1580 1 7128 121 7 3 chr4 167360583 167361643 -34966704 - THE1B-int LTR MaLR -516 1064 1 2084 117 57 20 chr4 167361643 167361994 -34966353 - THE1B LTR MaLR 0 364 1 504 97 0 0 chr4 167361996 167362068 -34966279 - MSTA LTR MaLR -356 72 1 2309 90 3 6 chr4 167363378 167363690 -34964657 + AluSx SINE Alu 1 311 -1 41 101 0 0 chr4 167365018 167365157 -34963190 + AT_rich Low_complexity Low_complexity 1 139 0 281 269 147 68 chr4 167365759 167366112 -34962235 - MLT1J2 LTR MaLR -28 422 42 2362 274 49 8 chr4 167367616 167368354 -34959993 - L1ME1 LINE L1 -36 6925 6158 484 135 71 24 chr4 167368375 167368501 -34959846 - L1ME1 LINE L1 -1387 5554 5423 242 254 0 0 chr4 167368512 167368575 -34959772 - L1ME1 LINE L1 -1637 5304 5242 1719 245 42 21 chr4 167368698 167369270 -34959077 - L1M4 LINE L1 -982 5164 4581 2061 271 71 30 chr4 167369302 167370211 -34958136 - L1ME1 LINE L1 -4888 1535 1072 351 78 0 0 chr4 167370211 167370262 -34958085 + (TG)n Simple_repeat Simple_repeat 2 52 0 2061 271 71 30 chr4 167370262 167370564 -34957783 - L1ME1 LINE L1 -5351 1072 784 273 29 0 0 chr4 167371319 167371353 -34956994 + (CA)n Simple_repeat Simple_repeat 2 35 0 26 0 0 0 chr4 167371491 167371517 -34956830 + AT_rich Low_complexity Low_complexity 1 26 0 530 303 98 37 chr4 167372561 167373237 -34955110 - L1ME3 LINE L1 -227 5935 5227 2256 102 20 0 chr4 167373447 167373576 -34954771 + AluSp SINE Alu 1 126 -187 243 0 0 0 chr4 167373576 167373603 -34954744 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2256 102 20 0 chr4 167373603 167373778 -34954569 + AluSp SINE Alu 126 311 -2 30849 81 1 13 chr4 167373783 167377954 -34950393 + L1PA4 LINE L1 7 4127 -2019 8176 30 23 1 chr4 167377991 167379739 -34948608 + L1PA4 LINE L1 4395 6153 -2 344 253 161 16 chr4 167379798 167379984 -34948363 - L1ME3 LINE L1 -931 5215 5003 607 205 246 31 chr4 167380010 167380026 -34948321 - L1MC4 LINE L1 -5 8037 8026 1560 112 25 12 chr4 167380026 167380267 -34948080 + AluSc SINE Alu 50 293 -16 189 0 0 0 chr4 167380268 167380289 -34948058 + (TA)n Simple_repeat Simple_repeat 1 21 0 607 205 246 31 chr4 167380289 167380558 -34947789 - L1MC4 LINE L1 -15 8027 7688 1374 188 158 0 chr4 167380627 167380956 -34947391 + MLT2C2 LTR ERVL 30 410 -54 225 182 91 0 chr4 167380997 167381041 -34947306 + MLT2C2 LTR ERVL 473 520 0 303 347 34 26 chr4 167381100 167381368 -34946979 - L1M4 LINE L1 -2987 3159 2890 446 268 57 16 chr4 167381423 167381617 -34946730 + L1M4 LINE L1 3743 3944 -2202 23 33 0 0 chr4 167382511 167382541 -34945806 + AT_rich Low_complexity Low_complexity 1 30 0 391 165 47 12 chr4 167383113 167383198 -34945149 + L1PA15 LINE L1 6078 6165 0 453 301 0 52 chr4 167383657 167383810 -34944537 + L2 LINE L2 3167 3311 -2 384 271 196 4 chr4 167385319 167385544 -34942803 + MLT1H1 LTR MaLR 281 548 -7 183 80 0 0 chr4 167385560 167385585 -34942762 + (TA)n Simple_repeat Simple_repeat 1 25 0 1769 153 7 24 chr4 167385594 167385888 -34942459 + AluSx SINE Alu 1 289 -23 2714 40 0 0 chr4 167386010 167386337 -34942010 + L1PA5 LINE L1 5823 6149 -5 371 318 69 17 chr4 167386412 167386585 -34941762 + MIR3 SINE MIR 26 207 -1 186 43 0 0 chr4 167387314 167387337 -34941010 + (CA)n Simple_repeat Simple_repeat 2 24 0 448 342 100 8 chr4 167387345 167387696 -34940651 - L1ME3A LINE L1 -220 5950 5568 219 333 45 0 chr4 167387952 167388018 -34940329 - MIR SINE MIR -147 115 47 5310 30 8 0 chr4 167389366 167390008 -34938339 - L1P LINE L1 -1310 4836 4190 7646 23 0 2 chr4 167390008 167391116 -34937231 + L1PA3 LINE L1 5050 6155 0 243 61 0 0 chr4 167391137 167391170 -34937177 + (CA)n Simple_repeat Simple_repeat 2 34 0 550 302 68 28 chr4 167391596 167391848 -34936499 - MIR SINE MIR 0 262 1 40 37 0 0 chr4 167392173 167392227 -34936120 + AT_rich Low_complexity Low_complexity 1 54 0 1866 194 58 19 chr4 167392276 167392688 -34935659 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr4 167392772 167392794 -34935553 + AT_rich Low_complexity Low_complexity 1 22 0 216 97 0 0 chr4 167393065 167393096 -34935251 + (CA)n Simple_repeat Simple_repeat 2 32 0 183 162 0 0 chr4 167393847 167393884 -34934463 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 763 141 54 0 chr4 167394898 167395047 -34933300 - L1MA8 LINE L1 -3 6288 6132 22 0 0 0 chr4 167395421 167395443 -34932904 + AT_rich Low_complexity Low_complexity 1 22 0 2586 52 0 0 chr4 167396212 167396517 -34931830 - AluY SINE Alu -6 305 1 541 328 98 13 chr4 167397695 167397930 -34930417 - MIR SINE MIR -5 257 3 261 0 0 0 chr4 167398061 167398090 -34930257 + (CA)n Simple_repeat Simple_repeat 2 30 0 505 310 23 35 chr4 167399073 167399247 -34929100 + MER5B DNA MER1_type 7 178 0 1667 152 82 28 chr4 167399953 167400309 -34928038 - THE1C LTR MaLR 0 375 1 397 245 75 100 chr4 167401617 167401948 -34926399 + HAL1 LINE L1 1246 1568 -939 536 171 0 0 chr4 167401948 167402036 -34926311 + FRAM SINE Alu 35 122 -54 186 103 0 0 chr4 167402076 167402105 -34926242 + (TAA)n Simple_repeat Simple_repeat 1 29 0 510 240 8 8 chr4 167402107 167402236 -34926111 + HAL1 LINE L1 1553 1681 -826 279 323 97 41 chr4 167402749 167402944 -34925403 + L2 LINE L2 1749 1954 -1360 276 30 0 0 chr4 167403262 167403295 -34925052 + (TG)n Simple_repeat Simple_repeat 2 34 0 374 347 13 0 chr4 167403482 167403632 -34924715 + MIR SINE MIR 85 236 -26 823 375 110 19 chr4 167403691 167404437 -34923910 + L2 LINE L2 1986 2799 -515 1217 237 37 113 chr4 167404768 167405062 -34923285 + MLT2B1 LTR ERVL 1 316 -204 2380 133 6 3 chr4 167405062 167405424 -34922923 + THE1B LTR MaLR 2 364 0 9944 118 31 32 chr4 167405424 167407005 -34921342 + THE1B-int LTR MaLR 1 1580 0 2276 143 20 3 chr4 167407007 167407363 -34920984 + THE1B LTR MaLR 3 364 0 1217 237 37 113 chr4 167407363 167407553 -34920794 + MLT2B1 LTR ERVL 316 452 -68 189 0 0 0 chr4 167407556 167407577 -34920770 + (TC)n Simple_repeat Simple_repeat 1 21 0 243 133 0 0 chr4 167407579 167407624 -34920723 + (CA)n Simple_repeat Simple_repeat 2 46 0 7710 159 35 16 chr4 167407625 167408973 -34919374 + Tigger4(Zombi) DNA MER2_type 2 1375 -1356 15335 164 103 43 chr4 167408973 167412144 -34916203 + L1M1 LINE L1 16 3376 -4189 1164 169 89 48 chr4 167412146 167412394 -34915953 + MSTA LTR MaLR 171 428 0 610 110 46 55 chr4 167412464 167412573 -34915774 - MLT2A2 LTR ERVL -35 418 311 * 1200 80 0 0 chr4 167412570 167412733 -34915614 - MLT2A1 LTR ERVL -281 163 1 17136 83 7 8 chr4 167412733 167415010 -34913337 - HERVL-A1 LTR ERVL 0 5654 3381 18498 79 5 22 chr4 167415110 167417606 -34910741 - HERVL LTR ERVL -1112 4542 2088 1021 171 12 6 chr4 167417603 167417773 -34910574 + HERVL LTR ERVL 4634 4804 -850 * 3935 131 33 3 chr4 167417774 167418414 -34909933 + Tigger4(Zombi) DNA MER2_type 1917 2575 -156 622 162 35 106 chr4 167418446 167418644 -34909703 + Tigger4(Zombi) DNA MER2_type 2541 2724 -7 336 78 59 0 chr4 167418688 167418739 -34909608 + MLT2B1 LTR ERVL 465 518 -2 23 33 0 0 chr4 167419109 167419139 -34909208 + AT_rich Low_complexity Low_complexity 1 30 0 840 299 16 34 chr4 167419657 167419978 -34908369 + L1ME3 LINE L1 5805 6119 -43 23 33 0 0 chr4 167420130 167420160 -34908187 + AT_rich Low_complexity Low_complexity 1 30 0 410 300 56 28 chr4 167420207 167420509 -34907838 + L1ME LINE L1 5366 5675 -495 1885 146 0 24 chr4 167420762 167421101 -34907246 + AluSx SINE Alu 5 336 0 2234 156 67 5 chr4 167421461 167421864 -34906483 - MSTA LTR MaLR 0 428 1 22 35 0 0 chr4 167422585 167422614 -34905733 + AT_rich Low_complexity Low_complexity 1 29 0 740 151 0 32 chr4 167422813 167422939 -34905408 + AluJb SINE Alu 168 289 -23 209 211 0 0 chr4 167423624 167423662 -34904685 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 438 331 0 0 chr4 167423736 167423863 -34904484 - L2 LINE L2 -18 3295 3169 263 247 171 77 chr4 167423939 167424109 -34904238 + L1MEc LINE L1 56 241 -6155 * 1943 249 13 42 chr4 167424108 167424800 -34903547 + L1MEc LINE L1 447 1118 -5278 191 397 22 15 chr4 167424876 167425012 -34903335 + L2 LINE L2 2771 2907 -407 317 330 52 10 chr4 167425274 167425371 -34902976 + L2 LINE L2 3141 3241 -31 3415 206 42 7 chr4 167425373 167426063 -34902284 - MER44D DNA MER2_type 0 605 20 1135 273 82 49 chr4 167426720 167427171 -34901176 - MER34 LTR ERV1 -76 466 1 1428 190 38 51 chr4 167427313 167427629 -34900718 + AluJo SINE Alu 1 312 0 41 36 0 0 chr4 167428811 167428866 -34899481 + AT_rich Low_complexity Low_complexity 1 55 0 1058 178 27 36 chr4 167429174 167429393 -34898954 + MER20 DNA MER1_type 1 217 -2 1256 194 85 52 chr4 167430554 167430884 -34897463 + MER58B DNA MER1_type 1 341 0 296 336 58 0 chr4 167430887 167431024 -34897323 + MIR SINE MIR 12 156 -106 3993 86 2 5 chr4 167431342 167431902 -34896445 - L1P LINE L1 -1340 4806 4249 223 272 158 61 chr4 167431905 167432019 -34896328 + MER5A DNA MER1_type 63 187 -2 2094 137 132 5 chr4 167433138 167433518 -34894829 + MSTA LTR MaLR 1 428 0 2616 80 118 5 chr4 167434083 167434122 -34894225 - MLT2A1 LTR ERVL 0 444 411 996 48 0 0 chr4 167434122 167434248 -34894099 + (TAGA)n Simple_repeat Simple_repeat 3 128 0 2616 80 118 5 chr4 167434248 167434606 -34893741 - MLT2A1 LTR ERVL -33 411 2 443 299 97 35 chr4 167434802 167435259 -34893088 + LTR33 LTR ERVL 1 521 0 30396 111 14 15 chr4 167435853 167440478 -34887869 - L1P LINE L1 -1519 4627 11 1769 122 0 16 chr4 167440525 167440771 -34887576 + AluSq SINE Alu 52 293 -20 186 43 0 0 chr4 167442281 167442304 -34886043 + (CA)n Simple_repeat Simple_repeat 1 23 0 241 214 0 43 chr4 167442873 167442943 -34885404 + GA-rich Low_complexity Low_complexity 4 70 0 303 246 45 45 chr4 167443375 167443485 -34884862 - MIR SINE MIR -66 196 87 1602 75 0 28 chr4 167444258 167444502 -34883845 - AluY SINE Alu 0 314 77 181 296 37 0 chr4 167445022 167445076 -34883271 + MIR SINE MIR 83 138 -70 297 360 9 9 chr4 167445301 167445412 -34882935 - MER5A DNA MER1_type -1 188 78 2205 97 3 0 chr4 167445646 167445944 -34882403 - AluSp SINE Alu -14 299 1 2020 222 71 26 chr4 167446321 167446930 -34881417 - MER92B LTR ERV1 0 636 1 1073 142 17 90 chr4 167446951 167447184 -34881163 + AluJb SINE Alu 91 306 -6 1113 230 67 3 chr4 167447358 167447641 -34880706 - MER92B LTR ERV1 -335 301 1 968 167 17 90 chr4 167447662 167447896 -34880451 + AluJb SINE Alu 91 307 -5 827 30 10 0 chr4 167448215 167448315 -34880032 - HY3 scRNA scRNA 0 101 1 21 0 0 0 chr4 167449538 167449559 -34878788 + AT_rich Low_complexity Low_complexity 1 21 0 405 288 118 39 chr4 167449632 167449861 -34878486 + MIR SINE MIR 16 262 0 215 295 22 0 chr4 167450764 167450842 -34877505 + MIR SINE MIR 48 130 -78 4877 63 3 0 chr4 167450951 167451592 -34876755 + L1PA8 LINE L1 5539 6181 0 596 296 48 56 chr4 167451595 167452202 -34876145 + L1ME3A LINE L1 4257 4858 -1288 970 249 60 74 chr4 167452313 167453058 -34875289 + L1ME3A LINE L1 5055 5791 -379 378 262 124 0 chr4 167453222 167453367 -34874980 + L1ME3A LINE L1 5792 5954 -216 1033 235 22 53 chr4 167453370 167453689 -34874658 + MLT1A2 LTR MaLR 1 309 -65 2440 230 30 13 chr4 167453810 167454415 -34873932 - L1MA9 LINE L1 -917 5229 4615 3781 191 64 40 chr4 167454425 167455016 -34873331 + L1MA9 LINE L1 5254 5829 -483 1493 226 44 26 chr4 167455016 167455405 -34872942 + MSTD LTR MaLR 1 396 0 3781 191 64 40 chr4 167455405 167455697 -34872650 + L1MA9 LINE L1 5829 6164 -148 243 88 0 0 chr4 167455697 167455731 -34872616 + (CA)n Simple_repeat Simple_repeat 1 34 0 3781 191 64 40 chr4 167455731 167455813 -34872534 + L1MA9 LINE L1 6164 6243 -69 241 169 34 8 chr4 167455815 167455933 -34872414 + (TA)n Simple_repeat Simple_repeat 2 122 0 358 260 64 35 chr4 167455933 167456106 -34872241 + L1MEd LINE L1 905 1082 -5037 377 239 34 0 chr4 167456107 167456195 -34872152 - MLT2F LTR ERVL -23 605 515 794 273 97 87 chr4 167456221 167456803 -34871544 - MLT2F LTR ERVL -92 571 1 976 300 44 35 chr4 167457163 167457596 -34870751 - ERVL-F LTR ERVL -321 5443 5007 1604 288 37 37 chr4 167457737 167458335 -34870012 - ERVL-F LTR ERVL -959 4805 4208 828 199 31 21 chr4 167458362 167458553 -34869794 + MERVL LTR ERVL 3998 4190 -1574 347 284 0 0 chr4 167458554 167458642 -34869705 + L1MD3 LINE L1 7513 7600 -395 2848 39 6 0 chr4 167458965 167459338 -34869009 - L1P LINE L1 -824 5330 4954 7184 26 1 0 chr4 167459338 167460187 -34868160 + L1PA4 LINE L1 5304 6153 -2 303 123 0 18 chr4 167460446 167460503 -34867844 - L1MA6 LINE L1 0 6300 6245 645 170 9 0 chr4 167460555 167460667 -34867680 + FLAM_C SINE Alu 2 114 -19 371 173 9 0 chr4 167460684 167460794 -34867553 + (TA)n Simple_repeat Simple_repeat 2 112 0 256 389 6 22 chr4 167461744 167461924 -34866423 + MERVL LTR ERVL 2885 3061 -2424 585 314 71 26 chr4 167461927 167462366 -34865981 + MERVL LTR ERVL 3889 4325 -1329 537 254 70 7 chr4 167462366 167462508 -34865839 + MIR SINE MIR 110 260 -2 261 285 106 63 chr4 167462658 167462792 -34865555 + MIR SINE MIR 45 193 -69 2127 105 0 46 chr4 167462792 167463098 -34865249 + AluSc SINE Alu 1 292 -17 261 285 106 63 chr4 167463098 167463170 -34865177 + MIR SINE MIR 193 260 -2 243 147 27 27 chr4 167463561 167463636 -34864711 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 21 36 0 0 chr4 167463994 167464022 -34864325 + AT_rich Low_complexity Low_complexity 1 28 0 212 157 26 70 chr4 167464061 167464176 -34864171 + (TATAA)n Simple_repeat Simple_repeat 4 113 0 6672 70 15 0 chr4 167464312 167465720 -34862627 - L1PA7 LINE L1 0 6154 4738 660 324 95 13 chr4 167466076 167466391 -34861956 + Charlie7 DNA MER1_type 1 341 -2271 1748 243 148 26 chr4 167466408 167467344 -34861003 + Charlie7 DNA MER1_type 1486 2536 -76 193 107 40 53 chr4 167467376 167467451 -34860896 + (TTATA)n Simple_repeat Simple_repeat 1 74 0 28 79 0 0 chr4 167467456 167467519 -34860828 + AT_rich Low_complexity Low_complexity 1 63 0 391 314 128 6 chr4 167468145 167468301 -34860046 + L2 LINE L2 1072 1246 -2068 1763 148 15 42 chr4 167468346 167468677 -34859670 - L1MCa LINE L1 -5605 821 500 1661 128 65 88 chr4 167468677 167469061 -34859286 - THE1C LTR MaLR 0 375 1 3999 154 6 26 chr4 167469062 167469725 -34858622 - THE1C-int LTR MaLR -67 1513 864 425 141 0 0 chr4 167469725 167469796 -34858551 - AluS SINE Alu -237 76 6 386 222 11 11 chr4 167469800 167469890 -34858457 + L2 LINE L2 2375 2464 -850 309 327 35 0 chr4 167469891 167470004 -34858343 + L2 LINE L2 2644 2760 -554 651 277 64 22 chr4 167470110 167470415 -34857932 - MER110A LTR ERV1 0 468 187 230 216 81 0 chr4 167470498 167470572 -34857775 - MER110A LTR ERV1 -388 80 1 1372 274 34 33 chr4 167470843 167471317 -34857030 + L2 LINE L2 2535 3010 -303 341 303 0 37 chr4 167471324 167471433 -34856914 + L2 LINE L2 3115 3219 -94 1586 183 121 6 chr4 167472265 167472620 -34855727 - MSTD LTR MaLR 0 396 1 21 0 0 0 chr4 167473392 167473413 -34854934 + AT_rich Low_complexity Low_complexity 1 21 0 758 306 58 21 chr4 167474065 167474441 -34853906 + MLT1I LTR MaLR 19 408 -1 715 209 7 0 chr4 167475935 167476074 -34852273 + MER3 DNA MER1_type 1 140 -69 186 345 17 0 chr4 167476186 167476244 -34852103 - L3 LINE CR1 -2 1575 1517 285 234 234 16 chr4 167476856 167476980 -34851367 - MER5B DNA MER1_type -27 151 1 36 40 0 0 chr4 167477683 167477733 -34850614 + AT_rich Low_complexity Low_complexity 1 50 0 303 259 89 0 chr4 167480218 167480353 -34847994 - Charlie7 DNA MER1_type -2456 156 10 1824 217 87 84 chr4 167480984 167481757 -34846590 - L1ME1 LINE L1 -5 6230 5456 1737 148 48 53 chr4 167481803 167482180 -34846167 + THE1C LTR MaLR 1 375 0 1970 250 50 64 chr4 167482318 167483318 -34845029 - L1ME1 LINE L1 -2717 3498 2513 1805 253 81 18 chr4 167483352 167484147 -34844200 - L1ME1 LINE L1 -3996 2400 1556 5789 163 12 6 chr4 167484167 167485833 -34842514 - L1PB2 LINE L1 -18 6133 4456 273 284 58 26 chr4 167486016 167486171 -34842176 - L1ME1 LINE L1 -4869 1244 1085 826 265 118 32 chr4 167486297 167486765 -34841582 - L1ME1 LINE L1 -5264 1132 625 1256 297 110 35 chr4 167486825 167487370 -34840977 - MLT1E LTR MaLR -7 586 1 747 342 38 13 chr4 167487477 167487924 -34840423 - L1ME1 LINE L1 -5879 517 60 22 35 0 0 chr4 167490402 167490431 -34837916 + AT_rich Low_complexity Low_complexity 1 29 0 2399 37 0 0 chr4 167491326 167491620 -34836727 - L1PA2 LINE L1 -1 6154 5861 750 207 21 128 chr4 167491931 167492259 -34836088 - MLT1A2 LTR MaLR -81 293 1 274 289 29 6 chr4 167492897 167493016 -34835331 + MIR SINE MIR 34 152 -97 588 266 22 93 chr4 167493509 167493873 -34834474 - MER46C DNA MER2_type 0 338 1 242 329 13 0 chr4 167494034 167494113 -34834234 - MIR3 SINE MIR -28 180 101 407 331 32 32 chr4 167494133 167494287 -34834060 + MIR SINE MIR 21 174 -88 326 208 28 14 chr4 167494289 167494361 -34833986 - L2 LINE L2 -3 3310 3238 236 247 72 10 chr4 167494353 167494450 -34833897 + MIR SINE MIR 160 262 0 * 2828 244 57 23 chr4 167495396 167495596 -34832751 + L1M1 LINE L1 11 203 -7362 2437 131 64 7 chr4 167495596 167496000 -34832347 - MSTA LTR MaLR 0 428 2 2828 244 57 23 chr4 167496000 167496542 -34831805 + L1M1 LINE L1 203 778 -6787 1901 167 14 35 chr4 167496539 167497733 -34830614 + L1PA16 LINE L1 4306 5824 -342 * 1901 104 0 0 chr4 167497733 167498001 -34830346 + L1PA16 LINE L1 5890 6157 -9 1901 167 14 35 chr4 167498001 167498329 -34830018 + L1PA16 LINE L1 5824 6157 -9 286 154 36 45 chr4 167498329 167498439 -34829908 + (TA)n Simple_repeat Simple_repeat 1 109 0 206 143 0 99 chr4 167498924 167499015 -34829332 + (TA)n Simple_repeat Simple_repeat 2 83 0 563 155 0 35 chr4 167499021 167499137 -34829210 + L1MA3 LINE L1 6194 6305 0 213 214 0 0 chr4 167499140 167499182 -34829165 + (ATAAG)n Simple_repeat Simple_repeat 2 43 0 529 276 122 13 chr4 167501715 167501871 -34826476 + MER5B DNA MER1_type 6 178 0 6938 213 82 23 chr4 167502270 167503907 -34824440 + L1P4 LINE L1 1 1734 -5053 5199 161 15 10 chr4 167503912 167505268 -34823079 + L1P4 LINE L1 4927 6284 -530 748 231 38 48 chr4 167505269 167505559 -34822788 + pTR5 LTR ERV1 742 1028 -1410 5295 96 59 21 chr4 167505615 167506411 -34821936 + LTR12 LTR ERV1 1 826 0 3403 93 33 8 chr4 167506411 167506928 -34821419 + L1PA13 LINE L1 5632 6161 -2 14227 187 60 69 chr4 167506941 167507540 -34820807 + L1PB1 LINE L1 6 609 -6258 576 82 35 0 chr4 167507540 167507625 -34820722 - AluSp/q SINE Alu -15 298 211 14227 187 60 69 chr4 167507625 167508734 -34819613 + L1PB1 LINE L1 609 1726 -5141 527 93 35 35 chr4 167508734 167508820 -34819527 - AluSp/q SINE Alu -17 296 211 14227 187 60 69 chr4 167508820 167509685 -34818662 + L1PB1 LINE L1 1726 2597 -4270 2371 71 7 7 chr4 167509685 167509980 -34818367 + AluY SINE Alu 1 295 -16 14227 187 60 69 chr4 167509980 167513759 -34814588 + L1PB1 LINE L1 2597 6494 -373 957 116 0 0 chr4 167513759 167513905 -34814442 + (TA)n Simple_repeat Simple_repeat 1 146 0 14227 187 60 69 chr4 167513905 167514276 -34814071 + L1PB1 LINE L1 6494 6867 0 381 322 101 0 chr4 167514816 167514965 -34813382 + MIR SINE MIR 99 262 0 772 277 144 28 chr4 167515162 167515446 -34812901 - MER82 DNA MER2_type -7 646 330 737 188 6 19 chr4 167515446 167515606 -34812741 + MLT1B LTR MaLR 1 158 -232 2054 118 54 0 chr4 167515669 167515965 -34812382 - AluSp SINE Alu -1 312 1 1058 191 5 0 chr4 167516305 167516504 -34811843 - MER82 DNA MER2_type -449 204 5 1108 271 63 51 chr4 167516708 167517477 -34810870 - L1ME LINE L1 -4470 1610 827 2901 9 0 0 chr4 167517477 167517792 -34810555 - AluYb8 SINE Alu -3 315 1 1108 271 63 51 chr4 167517792 167518320 -34810027 - L1ME LINE L1 -5253 827 307 541 222 22 15 chr4 167518424 167518559 -34809788 - L1ME LINE L1 -5929 141 6 355 255 30 27 chr4 167518824 167518981 -34809366 - MLT1I LTR MaLR -267 142 57 2579 269 59 28 chr4 167519207 167520375 -34807972 + L1M4 LINE L1 3676 4879 -1267 1518 269 135 10 chr4 167520368 167520984 -34807363 + L1ME2 LINE L1 5418 6110 -54 * 416 308 13 26 chr4 167521188 167521353 -34806994 - MIR SINE MIR -76 186 23 198 0 0 0 chr4 167521376 167521398 -34806949 + (TG)n Simple_repeat Simple_repeat 1 22 0 2119 76 8 0 chr4 167521398 167521661 -34806686 - AluSq SINE Alu -33 280 16 183 100 20 60 chr4 167522339 167522389 -34805958 + (GGGAGA)n Simple_repeat Simple_repeat 4 51 0 21 57 0 0 chr4 167522485 167522520 -34805827 + AT_rich Low_complexity Low_complexity 1 35 0 1817 208 71 41 chr4 167522618 167523108 -34805239 + MLT1D LTR MaLR 1 505 0 199 277 0 0 chr4 167523375 167523422 -34804925 + L2 LINE L2 3264 3310 -3 525 363 33 0 chr4 167523645 167523885 -34804462 + MIR SINE MIR 1 248 -14 528 274 123 65 chr4 167524095 167524574 -34803773 + MER34 LTR ERV1 1 507 -35 205 273 30 15 chr4 167524911 167524977 -34803370 + MER91B DNA MER1_type 1 67 -123 21 0 0 0 chr4 167525052 167525073 -34803274 + AT_rich Low_complexity Low_complexity 1 21 0 1302 242 22 19 chr4 167525085 167525453 -34802894 - L1ME3 LINE L1 -28 6134 5766 367 22 0 0 chr4 167525462 167525507 -34802840 - MADE1 DNA Mariner -35 45 1 342 268 47 8 chr4 167525512 167525639 -34802708 - L1ME3 LINE L1 -418 5746 5615 * 776 273 35 8 chr4 167525620 167525986 -34802361 + L1M4 LINE L1 4988 5363 -783 299 274 52 30 chr4 167525988 167526123 -34802224 + L1M4 LINE L1 4708 4845 -1301 706 307 97 0 chr4 167527465 167527703 -34800644 + MIR SINE MIR 2 262 0 243 88 0 0 chr4 167527726 167527760 -34800587 + (TG)n Simple_repeat Simple_repeat 2 35 0 1722 167 0 24 chr4 167528417 167528737 -34799610 - AluJb SINE Alu 0 314 2 5406 91 30 9 chr4 167529236 167530047 -34798300 + L1PB1 LINE L1 5322 6151 0 287 372 82 10 chr4 167530127 167530334 -34798013 - L2 LINE L2 -262 3051 2830 409 328 194 11 chr4 167530383 167530764 -34797583 - LTR67 LTR ERVL -71 486 36 219 257 43 29 chr4 167531625 167531695 -34796652 - MER5A DNA MER1_type -22 167 97 502 303 83 66 chr4 167533892 167534427 -34793920 + L1ME LINE L1 2942 3516 -2630 306 300 96 32 chr4 167534727 167534947 -34793400 + L1ME LINE L1 4882 5115 -1031 433 312 92 34 chr4 167535075 167535511 -34792836 + L1ME LINE L1 5258 5718 -452 8214 173 29 15 chr4 167535852 167536669 -34791678 - L1PA13 LINE L1 -6 6157 5353 2132 121 10 7 chr4 167536669 167536974 -34791373 + AluSx SINE Alu 5 310 -2 8214 173 29 15 chr4 167536974 167537897 -34790450 - L1PA13 LINE L1 -810 5353 4380 438 20 0 0 chr4 167537897 167537948 -34790399 + (TG)n Simple_repeat Simple_repeat 2 52 0 8214 173 29 15 chr4 167537948 167538615 -34789732 - L1PA13 LINE L1 -1783 4380 3724 2949 182 11 20 chr4 167538615 167539258 -34789089 + L1PA13 LINE L1 3066 3702 -2444 5791 15 6 1 chr4 167539823 167540490 -34787857 - L1PA3 LINE L1 -1 6154 5485 354 283 23 50 chr4 167542269 167542723 -34785624 + L1ME2 LINE L1 1845 2347 -4049 744 218 102 59 chr4 167542758 167543061 -34785286 + L1ME2 LINE L1 4686 5001 -1214 297 248 30 23 chr4 167543100 167543233 -34785114 + CT-rich Low_complexity Low_complexity 5 138 0 1412 245 75 49 chr4 167543377 167543994 -34784353 + L1ME2 LINE L1 5176 5836 -397 1391 36 0 0 chr4 167543994 167544161 -34784186 + L1PA5 LINE L1 5982 6148 -6 1412 245 75 49 chr4 167544161 167544561 -34783786 + L1ME2 LINE L1 5836 6224 -9 21 0 0 0 chr4 167545136 167545157 -34783190 + AT_rich Low_complexity Low_complexity 1 21 0 186 0 88 0 chr4 167545939 167545973 -34782374 + T-rich Low_complexity Low_complexity 2 38 0 2842 21 0 0 chr4 167545977 167546306 -34782041 - L1PA2 LINE L1 0 6155 5827 194 128 26 0 chr4 167546985 167547024 -34781323 + CT-rich Low_complexity Low_complexity 2 41 0 1941 110 43 20 chr4 167547028 167547327 -34781020 - AluSx SINE Alu -6 306 1 273 98 0 0 chr4 167547548 167547589 -34780758 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 180 316 0 51 chr4 167547614 167547712 -34780635 - L2 LINE L2 -274 2998 2906 249 33 0 0 chr4 167548157 167548187 -34780160 + (CA)n Simple_repeat Simple_repeat 2 31 0 214 121 0 69 chr4 167548814 167548872 -34779475 + (TAAAAA)n Simple_repeat Simple_repeat 6 59 0 618 224 0 0 chr4 167548874 167548990 -34779357 - FLAM_C SINE Alu -26 117 2 195 362 16 24 chr4 167549027 167549154 -34779193 - L2 LINE L2 -2678 636 511 300 297 60 37 chr4 167550032 167550352 -34777995 - L2 LINE L2 -605 2709 2305 1041 152 76 22 chr4 167550547 167550771 -34777576 - L1MA9 LINE L1 -6 6306 6071 334 86 207 0 chr4 167550775 167550833 -34777514 - L1MA9 LINE L1 -172 6140 6071 527 142 133 0 chr4 167550837 167550950 -34777397 - L1MA9 LINE L1 -172 6140 6013 206 364 171 2 chr4 167550950 167551343 -34777004 - L2 LINE L2 -1315 1999 1541 180 77 0 0 chr4 167551614 167551640 -34776707 + (CA)n Simple_repeat Simple_repeat 1 26 0 22 56 0 0 chr4 167551837 167551873 -34776474 + AT_rich Low_complexity Low_complexity 1 36 0 3234 96 19 12 chr4 167552063 167552542 -34775805 - L1PA13 LINE L1 -57 6106 5625 308 323 71 26 chr4 167553039 167553194 -34775153 - MIR3 SINE MIR -7 201 40 2219 247 47 22 chr4 167553542 167554134 -34774213 - MLT1E2 LTR MaLR -7 619 13 374 310 222 7 chr4 167554471 167554755 -34773592 + L3 LINE CR1 578 922 -655 286 124 103 0 chr4 167555399 167555496 -34772851 + (TA)n Simple_repeat Simple_repeat 2 108 0 421 274 65 24 chr4 167556894 167557062 -34771285 + MIR SINE MIR 8 182 -80 1089 341 136 18 chr4 167557356 167558437 -34769910 - L2 LINE L2 -5 3308 2095 217 367 0 0 chr4 167558547 167558637 -34769710 + L2 LINE L2 2447 2536 -778 185 149 43 0 chr4 167558932 167558979 -34769368 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 21 57 0 0 chr4 167559546 167559581 -34768766 + AT_rich Low_complexity Low_complexity 1 35 0 250 379 53 34 chr4 167559878 167560142 -34768205 - MLT1L LTR MaLR -221 394 126 2646 280 105 29 chr4 167560418 167562105 -34766242 - L1MEc LINE L1 -3875 2521 707 439 363 14 24 chr4 167562799 167563094 -34765253 - L1MEc LINE L1 -6030 366 75 247 321 9 66 chr4 167564732 167564838 -34763509 + L2 LINE L2 3197 3296 -17 24 0 0 0 chr4 167564878 167564902 -34763445 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr4 167564924 167564945 -34763402 + (CA)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr4 167566104 167566127 -34762220 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 167566143 167566166 -34762181 + AT_rich Low_complexity Low_complexity 1 23 0 220 372 54 40 chr4 167568401 167568549 -34759798 + L2 LINE L2 3123 3272 0 24 0 0 0 chr4 167568885 167568909 -34759438 + AT_rich Low_complexity Low_complexity 1 24 0 323 231 0 19 chr4 167569015 167569119 -34759228 + GA-rich Low_complexity Low_complexity 3 104 0 219 160 40 20 chr4 167569122 167569172 -34759175 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 191 161 18 0 chr4 167569177 167569233 -34759114 + GA-rich Low_complexity Low_complexity 2 58 0 1074 221 86 20 chr4 167570654 167570957 -34757390 + MLT1C LTR MaLR 145 467 0 781 233 79 99 chr4 167571075 167571479 -34756868 + MSTD LTR MaLR 1 396 0 22 35 0 0 chr4 167571603 167571632 -34756715 + AT_rich Low_complexity Low_complexity 1 29 0 204 228 105 0 chr4 167571768 167571825 -34756522 + MIR3 SINE MIR 139 201 -7 31 88 0 0 chr4 167572504 167572584 -34755763 + AT_rich Low_complexity Low_complexity 1 80 0 491 232 139 89 chr4 167572700 167572937 -34755410 - MIR SINE MIR -7 255 7 240 35 0 0 chr4 167574015 167574044 -34754303 + (ATG)n Simple_repeat Simple_repeat 3 31 0 827 271 8 53 chr4 167574046 167574303 -34754044 - MIR SINE MIR -4 258 14 246 333 46 19 chr4 167575039 167575147 -34753200 + L1M4 LINE L1 4050 4160 -1986 193 271 152 73 chr4 167575550 167575701 -34752646 - L2 LINE L2 -939 2375 2213 264 322 23 54 chr4 167575782 167575944 -34752403 - MIR SINE MIR -60 202 44 221 194 16 32 chr4 167576281 167576343 -34752004 + CT-rich Low_complexity Low_complexity 2 62 0 316 352 60 77 chr4 167576626 167577029 -34751318 - L2 LINE L2 -6 3266 2871 348 24 0 0 chr4 167577225 167577266 -34751081 + (TG)n Simple_repeat Simple_repeat 1 41 0 263 298 39 29 chr4 167578254 167578358 -34749989 + MIR SINE MIR 64 168 -94 318 269 0 43 chr4 167578412 167578505 -34749842 - L1ME3A LINE L1 -170 6000 5912 21 0 0 0 chr4 167581284 167581305 -34747042 + AT_rich Low_complexity Low_complexity 1 21 0 267 372 12 0 chr4 167583159 167583245 -34745102 + MER91A DNA MER1_type 8 94 -102 267 289 149 57 chr4 167583330 167583620 -34744727 - Charlie8 DNA MER1_type -1015 1402 1 546 119 0 0 chr4 167583848 167583932 -34744415 + (TA)n Simple_repeat Simple_repeat 1 84 0 5844 156 11 10 chr4 167584191 167585862 -34742485 - L1PB2 LINE L1 0 6151 4478 375 171 0 0 chr4 167586537 167586613 -34741734 + CT-rich Low_complexity Low_complexity 1 76 0 1814 159 3 36 chr4 167586786 167587095 -34741252 + AluSg SINE Alu 1 299 -11 666 152 0 140 chr4 167587842 167588006 -34740341 - FLAM_C SINE Alu -2 141 1 712 300 110 9 chr4 167588507 167588734 -34739613 - MIR SINE MIR -2 260 11 333 261 26 133 chr4 167588751 167588946 -34739401 + HAL1 LINE L1 178 351 -2156 226 338 75 0 chr4 167588986 167589119 -34739228 + HAL1 LINE L1 485 627 -1880 245 295 70 50 chr4 167589234 167589434 -34738913 + HAL1 LINE L1 818 1021 -1486 2793 279 61 13 chr4 167590081 167591220 -34737127 - L2 LINE L2 -2 3311 2115 559 283 137 13 chr4 167592279 167592512 -34735835 - MIR SINE MIR 0 262 1 827 161 25 0 chr4 167592654 167592815 -34735532 + L1MA8 LINE L1 6108 6272 -19 565 314 70 24 chr4 167593054 167593423 -34734924 + L2 LINE L2 2234 2619 -695 449 231 8 26 chr4 167593772 167593889 -34734458 + LTR67 LTR ERVL 432 546 -11 554 351 96 44 chr4 167593902 167594504 -34733843 + L2 LINE L2 2656 3287 -26 195 129 0 0 chr4 167595101 167595132 -34733215 + (GGA)n Simple_repeat Simple_repeat 1 31 0 215 241 76 51 chr4 167598381 167598460 -34729887 - MIR SINE MIR -62 200 120 453 285 8 8 chr4 167598716 167598846 -34729501 + L2 LINE L2 2280 2409 -905 192 352 80 0 chr4 167598993 167599081 -34729266 + L2 LINE L2 3158 3252 -20 2118 129 0 3 chr4 167599463 167599766 -34728581 + AluSq SINE Alu 1 302 -11 1273 241 74 58 chr4 167599877 167600374 -34727973 - MLT1D LTR MaLR 0 505 1 239 268 14 28 chr4 167600430 167600501 -34727846 - MIR SINE MIR -1 261 192 275 48 0 24 chr4 167600767 167600809 -34727538 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2029 109 3 7 chr4 167600812 167601095 -34727252 - AluSc SINE Alu -25 284 3 182 218 0 18 chr4 167601419 167601474 -34726873 + CT-rich Low_complexity Low_complexity 3 56 0 33 25 0 0 chr4 167601702 167601742 -34726605 + AT_rich Low_complexity Low_complexity 1 40 0 236 328 61 61 chr4 167602378 167602509 -34725838 - L2 LINE L2 -13 3259 3129 198 0 0 0 chr4 167602562 167602584 -34725763 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 205 416 9 9 chr4 167602797 167602910 -34725437 + L2 LINE L2 3201 3313 0 1245 306 30 69 chr4 167603133 167603173 -34725174 + L2 LINE L2 2180 2220 -1094 2230 84 10 10 chr4 167603173 167603482 -34724865 - AluY SINE Alu -2 309 1 1245 306 30 69 chr4 167603482 167604097 -34724250 + L2 LINE L2 2220 2810 -504 567 297 46 63 chr4 167604097 167604336 -34724011 + MIR SINE MIR 1 235 -27 312 336 161 33 chr4 167604390 167604720 -34723627 + L2 LINE L2 2805 3176 -137 294 167 36 0 chr4 167604826 167604910 -34723437 + (TA)n Simple_repeat Simple_repeat 2 88 0 14612 64 5 1 chr4 167605302 167607996 -34720351 - L1PA5 LINE L1 0 6154 3453 2645 168 12 43 chr4 167608114 167608331 -34720016 + L1MB3 LINE L1 5616 5838 -345 2323 107 0 0 chr4 167608331 167608641 -34719706 + AluSg SINE Alu 1 310 0 2645 168 12 43 chr4 167608641 167609001 -34719346 + L1MB3 LINE L1 5838 6175 -8 485 274 38 85 chr4 167609090 167609302 -34719045 + MIR SINE MIR 58 259 -3 24903 85 9 4 chr4 167609404 167612819 -34715528 - L1P LINE L1 -2712 3434 1 225 0 0 0 chr4 167614115 167614140 -34714207 + (T)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr4 167615154 167615177 -34713170 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 338 138 113 0 chr4 167615178 167615258 -34713089 + L1MA10 LINE L1 6244 6332 -2 24 32 0 0 chr4 167615387 167615418 -34712929 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 167615655 167615676 -34712671 + AT_rich Low_complexity Low_complexity 1 21 0 210 308 77 0 chr4 167615754 167615832 -34712515 - MIR SINE MIR -111 151 68 330 200 0 0 chr4 167615947 167616017 -34712330 - L1ME LINE L1 -676 5486 5417 * 1684 288 73 38 chr4 167616015 167617024 -34711323 - L1MEc LINE L1 -4453 1943 882 2103 105 10 26 chr4 167617024 167617330 -34711017 - AluSg SINE Alu -9 301 1 1684 288 73 38 chr4 167617330 167617548 -34710799 - L1MEc LINE L1 -5514 882 673 23 0 0 0 chr4 167617650 167617673 -34710674 + AT_rich Low_complexity Low_complexity 1 23 0 642 316 39 11 chr4 167617890 167618175 -34710172 - L1MEc LINE L1 -5995 401 109 2594 218 20 63 chr4 167618414 167619111 -34709236 - LTR8 LTR ERV1 0 691 25 638 269 16 16 chr4 167619164 167619350 -34708997 + MIR SINE MIR 75 260 -2 389 272 16 32 chr4 167619624 167619749 -34708598 + MLT1J1 LTR MaLR 7 129 -317 26 74 0 0 chr4 167620507 167620561 -34707786 + AT_rich Low_complexity Low_complexity 1 54 0 21 89 0 0 chr4 167621190 167621246 -34707101 + AT_rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr4 167621311 167621334 -34707013 + AT_rich Low_complexity Low_complexity 1 23 0 7034 41 1 0 chr4 167621354 167622202 -34706145 - L1PA5 LINE L1 -5 6149 5301 405 330 55 69 chr4 167622378 167622726 -34705621 + MLT1J2 LTR MaLR 60 402 -48 338 299 68 103 chr4 167623195 167623516 -34704831 - MLT1J LTR MaLR -86 425 116 216 67 0 0 chr4 167623922 167623952 -34704395 + (TG)n Simple_repeat Simple_repeat 2 31 0 3820 168 30 91 chr4 167625157 167626292 -34702055 + L1MB3 LINE L1 5117 6179 -4 526 224 50 119 chr4 167626900 167627338 -34701009 - LTR37A LTR ERV1 -18 408 1 30 0 0 0 chr4 167628699 167628729 -34699618 + AT_rich Low_complexity Low_complexity 1 30 0 258 254 17 0 chr4 167629313 167629372 -34698975 - Zaphod DNA AcHobo -3971 60 1 2573 134 11 41 chr4 167629406 167629845 -34698502 - MSTC LTR MaLR -2 426 1 300 208 0 0 chr4 167630012 167630065 -34698282 + HERV16 LTR ERVL 2690 2742 -2254 424 325 89 32 chr4 167630065 167630527 -34697820 + HERV16 LTR ERVL 3660 4147 -1507 400 308 69 0 chr4 167630530 167630660 -34697687 + LTR16A LTR ERVL 302 440 -10 198 250 0 0 chr4 167630685 167630741 -34697606 + CT-rich Low_complexity Low_complexity 2 57 0 1001 236 5 5 chr4 167630872 167631071 -34697276 - MER58A DNA MER1_type 0 224 26 67 55 0 0 chr4 167633033 167633142 -34695205 + AT_rich Low_complexity Low_complexity 1 109 0 25 65 0 0 chr4 167633858 167633904 -34694443 + AT_rich Low_complexity Low_complexity 1 46 0 2119 100 0 10 chr4 167634462 167634761 -34693586 + AluSx SINE Alu 9 304 -8 2055 96 10 7 chr4 167635259 167635562 -34692785 + AluSg1 SINE Alu 1 304 -5 2060 226 28 28 chr4 167636016 167636515 -34691832 + LTR53 LTR ERVL 6 504 -15 219 277 12 12 chr4 167636723 167636806 -34691541 + (TTTA)n Simple_repeat Simple_repeat 2 84 0 1326 234 78 50 chr4 167636833 167637294 -34691053 - Charlie5 DNA MER1_type -1121 1491 1018 1042 104 134 0 chr4 167637292 167637456 -34690891 + MSTA LTR MaLR 243 428 0 * 2400 228 50 11 chr4 167637485 167638199 -34690148 - Charlie5 DNA MER1_type -2489 123 1 1473 238 8 31 chr4 167639355 167639738 -34688609 - MLT1A2 LTR MaLR 0 374 1 2368 117 5 3 chr4 167640468 167640836 -34687511 - L1PB1 LINE L1 0 6151 5783 255 204 0 0 chr4 167640836 167640890 -34687457 + (TATG)n Simple_repeat Simple_repeat 4 57 0 1095 139 0 0 chr4 167640891 167641071 -34687276 + (TA)n Simple_repeat Simple_repeat 1 180 0 1458 123 0 0 chr4 167641071 167641298 -34687049 - L1PB1 LINE L1 -366 5785 5559 4987 166 22 23 chr4 167641298 167641483 -34686864 + L1P5 LINE L1 4213 4397 -1754 180 0 0 0 chr4 167641483 167641503 -34686844 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 4987 166 22 23 chr4 167641503 167642679 -34685668 + L1P5 LINE L1 4397 5574 -577 1440 254 15 0 chr4 167643099 167643434 -34684913 + MER58B DNA MER1_type 2 341 0 21 0 0 0 chr4 167645080 167645101 -34683246 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr4 167647490 167647514 -34680833 + (T)n Simple_repeat Simple_repeat 1 24 0 5765 109 7 1 chr4 167648221 167649061 -34679286 + L1PA14 LINE L1 5308 6152 -9 23 0 0 0 chr4 167649068 167649091 -34679256 + AT_rich Low_complexity Low_complexity 1 23 0 797 321 57 42 chr4 167649163 167649546 -34678801 - MLT1J LTR MaLR -108 403 15 25 31 0 0 chr4 167649684 167649716 -34678631 + AT_rich Low_complexity Low_complexity 1 32 0 2235 110 0 0 chr4 167652055 167652354 -34675993 + AluSc SINE Alu 3 301 -8 2217 102 16 0 chr4 167653632 167653935 -34674412 - AluSg SINE Alu -2 308 1 2207 215 74 59 chr4 167756066 167756281 -34572066 + LTR1B LTR ERV1 1 211 -615 2401 110 19 40 chr4 167756281 167756653 -34571694 - THE1B LTR MaLR 0 364 1 2207 215 74 59 chr4 167756653 167757171 -34571176 + LTR1B LTR ERV1 211 745 -81 447 287 77 7 chr4 167757355 167757382 -34570965 - MIR SINE MIR -85 177 153 1678 194 3 17 chr4 167757382 167757676 -34570671 - AluJo SINE Alu -12 300 11 447 287 77 7 chr4 167757676 167757791 -34570556 - MIR SINE MIR -109 153 25 362 219 8 16 chr4 167757887 167758010 -34570337 + L1MC4 LINE L1 7709 7830 -212 334 291 68 25 chr4 167758251 167758542 -34569805 + L1M4 LINE L1 4027 4351 -1795 186 71 0 0 chr4 167759138 167759166 -34569181 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2062 128 0 3 chr4 167759168 167759450 -34568897 - AluSq SINE Alu -29 284 4 2302 168 80 45 chr4 167759452 167759940 -34568407 - LTR22 LTR ERVK -4 505 1 32820 81 6 2 chr4 167759984 167764479 -34563868 - HERVK22 LTR ERVK -13 6824 2314 5080 109 31 8 chr4 167764462 167765238 -34563109 - HERVK22 LTR ERVK -6043 794 1 * 2284 160 86 43 chr4 167765238 167765726 -34562621 - LTR22 LTR ERVK 0 509 1 255 31 0 0 chr4 167765835 167765867 -34562480 + (TA)n Simple_repeat Simple_repeat 1 32 0 27 0 0 0 chr4 167765896 167765923 -34562424 + AT_rich Low_complexity Low_complexity 1 27 0 1429 115 23 0 chr4 167767836 167768054 -34560293 + L1PA13 LINE L1 5938 6160 -3 2130 87 0 0 chr4 167768061 167768327 -34560020 + AluSg SINE Alu 42 307 -3 1509 164 151 0 chr4 167768579 167768878 -34559469 + MER7A DNA MER2_type 1 342 -4 2262 113 0 6 chr4 167770232 167770543 -34557804 - AluSq SINE Alu -4 309 1 889 322 63 23 chr4 167771990 167772590 -34555757 - HERV16 LTR ERVL -4372 624 1 1112 246 84 38 chr4 167772602 167773020 -34555327 - LTR16A1 LTR ERVL -12 445 9 349 300 48 53 chr4 167773669 167774082 -34554265 - HAL1 LINE L1 -860 1647 1237 10037 231 20 39 chr4 167775208 167776482 -34551865 - L1P LINE L1 -1263 4883 3586 315 0 0 0 chr4 167776482 167776517 -34551830 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 10037 231 20 39 chr4 167776517 167778421 -34549926 - L1P LINE L1 -2560 3586 1765 947 322 29 37 chr4 167778653 167779268 -34549079 - L1PA13 LINE L1 -6177 610 1 687 319 72 43 chr4 167779760 167780297 -34548050 - L2 LINE L2 -40 3273 2727 403 230 157 58 chr4 167780351 167780542 -34547805 + L2 LINE L2 3102 3311 -2 230 302 83 0 chr4 167781921 167782017 -34546330 - L2 LINE L2 -32 3240 3137 356 304 9 18 chr4 167782034 167782146 -34546201 + L2 LINE L2 3189 3299 -14 21 0 0 0 chr4 167782151 167782172 -34546175 + AT_rich Low_complexity Low_complexity 1 21 0 2210 113 3 3 chr4 167782879 167783188 -34545159 + AluSq SINE Alu 1 309 -4 240 131 0 66 chr4 167783249 167783310 -34545037 - L1MC4 LINE L1 0 8042 7986 1149 247 116 46 chr4 167783339 167783797 -34544550 - MLT1G1 LTR MaLR -7 588 99 3782 85 6 0 chr4 167783956 167784500 -34543847 - L1P LINE L1 -1746 4400 3854 6755 71 8 0 chr4 167784501 167785790 -34542557 + L1PA7 LINE L1 4854 6150 -4 2994 113 20 20 chr4 167785790 167786296 -34542051 + L1PA16 LINE L1 5323 5828 -338 2368 80 0 10 chr4 167786297 167786597 -34541750 + AluY SINE Alu 1 297 -14 560 308 51 76 chr4 167787806 167787923 -34540424 + L1M3c LINE L1 1124 1242 -5071 2427 105 0 0 chr4 167787923 167788229 -34540118 + AluSg SINE Alu 1 306 -4 560 308 51 76 chr4 167788229 167788905 -34539442 + L1M3c LINE L1 1242 1758 -4555 309 281 35 18 chr4 167788961 167789075 -34539272 - MIR3 SINE MIR -11 197 82 293 266 75 3 chr4 167789267 167789357 -34538990 - MIR SINE MIR -103 105 27 2181 124 0 6 chr4 167789482 167789797 -34538550 - AluSq SINE Alu 0 313 1 1374 183 75 123 chr4 167790378 167790816 -34537531 + MER47B DNA MER2_type 1 417 -1 1785 176 72 7 chr4 167790950 167791353 -34536994 + MLT1C LTR MaLR 10 438 -29 992 197 88 32 chr4 167791582 167791981 -34536366 - MER69 DNA AcHobo 0 2526 2094 351 0 0 0 chr4 167792097 167792136 -34536211 + (CA)n Simple_repeat Simple_repeat 2 40 0 2319 104 0 0 chr4 167792312 167792610 -34535737 + AluSx SINE Alu 1 298 -14 502 188 133 12 chr4 167792862 167793027 -34535320 - MER69 DNA AcHobo 0 2526 2342 236 271 0 0 chr4 167793146 167793205 -34535142 - MER69 DNA AcHobo -1167 59 1 241 286 78 0 chr4 167794031 167794108 -34534239 + L2 LINE L2 3154 3236 -36 261 0 0 0 chr4 167795887 167795916 -34532431 + (T)n Simple_repeat Simple_repeat 1 29 0 1282 264 57 30 chr4 167796473 167796575 -34531772 - L2 LINE L2 -466 2848 2750 1312 146 50 0 chr4 167796575 167796794 -34531553 - MER30 DNA MER1_type 0 230 1 1282 264 57 30 chr4 167796794 167797097 -34531250 - L2 LINE L2 -564 2750 2432 397 273 114 0 chr4 167797134 167797266 -34531081 - MIR SINE MIR -32 230 84 288 291 55 18 chr4 167797268 167797378 -34530969 - L2 LINE L2 -887 2427 2314 622 236 29 29 chr4 167797512 167797686 -34530661 + MER63A DNA MER1_type 2 175 -35 28 29 0 0 chr4 167798985 167799020 -34529327 + AT_rich Low_complexity Low_complexity 1 35 0 488 363 28 56 chr4 167799382 167799809 -34528538 - L1MEc LINE L1 -5901 495 81 270 330 28 0 chr4 167800880 167800989 -34527358 + L2 LINE L2 3197 3308 -5 356 182 15 0 chr4 167801256 167801322 -34527025 - MIR SINE MIR -49 213 147 397 301 77 7 chr4 167801707 167801850 -34526497 - MIR SINE MIR -25 237 85 695 200 25 31 chr4 167802777 167802937 -34525410 - MER5A DNA MER1_type -30 159 1 352 247 136 57 chr4 167805619 167805758 -34522589 + MER5B DNA MER1_type 20 180 -9 385 276 46 46 chr4 167805901 167806075 -34522272 - L1ME3A LINE L1 -9 6161 5988 495 268 34 39 chr4 167807525 167807704 -34520643 - MIR SINE MIR -67 195 18 249 33 0 0 chr4 167809487 167809517 -34518830 + (GA)n Simple_repeat Simple_repeat 1 30 0 1058 123 18 12 chr4 167810059 167810230 -34518117 - L1MA9 LINE L1 -88 6224 6053 1628 170 4 0 chr4 167810230 167810500 -34517847 + MER7A DNA MER2_type 52 320 -26 1397 173 13 102 chr4 167810507 167810940 -34517407 - L1MA9 LINE L1 -436 5719 5410 2161 100 10 3 chr4 167810940 167811241 -34517106 - AluSp SINE Alu -10 303 1 1397 173 13 102 chr4 167811241 167811291 -34517056 - L1MA9 LINE L1 -745 5410 5357 1971 158 30 3 chr4 167811704 167812032 -34516315 - MER7A DNA MER2_type 0 346 12 302 269 39 10 chr4 167812294 167812398 -34515949 - L1MC4 LINE L1 -5 8037 7931 2190 118 0 3 chr4 167812424 167812728 -34515619 - AluSq SINE Alu -8 305 3 1504 203 105 33 chr4 167812740 167813189 -34515158 - L1MC4 LINE L1 -778 7264 6784 35 71 0 0 chr4 167813318 167813388 -34514959 + AT_rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr4 167814855 167814876 -34513471 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 167815064 167815092 -34513255 + AT_rich Low_complexity Low_complexity 1 28 0 2063 125 7 0 chr4 167818925 167819222 -34509125 - AluSp SINE Alu -14 299 1 2158 61 0 4 chr4 167820064 167820343 -34508004 + L1PA5 LINE L1 5864 6141 -13 38 0 0 0 chr4 167820343 167820381 -34507966 + AT_rich Low_complexity Low_complexity 1 38 0 669 104 122 0 chr4 167820824 167820909 -34507438 + L1MA9 LINE L1 6067 6171 -141 243 0 0 0 chr4 167820909 167820936 -34507411 + (CA)n Simple_repeat Simple_repeat 1 27 0 669 104 122 0 chr4 167820936 167820965 -34507382 + L1MA9 LINE L1 6171 6195 -117 289 67 22 0 chr4 167820965 167821010 -34507337 + MADE1 DNA Mariner 1 46 -34 273 103 0 0 chr4 167821273 167821312 -34507035 + L1MA9 LINE L1 6191 6229 -83 301 248 59 30 chr4 167821679 167821780 -34506567 - MIR SINE MIR -108 154 51 357 357 13 14 chr4 167822648 167822804 -34505543 - MIR3 SINE MIR -71 137 2 1225 168 0 5 chr4 167823709 167823912 -34504435 - AluJb SINE Alu -5 307 106 715 251 121 9 chr4 167824015 167824238 -34504109 + MIR SINE MIR 15 262 0 867 188 50 35 chr4 167824444 167824646 -34503701 - MER3 DNA MER1_type 0 209 5 834 291 107 11 chr4 167824820 167825184 -34503163 + L1ME4a LINE L1 5364 5762 -359 247 197 0 105 chr4 167825186 167825262 -34503085 - MSTA LTR MaLR 0 426 359 * 1775 162 39 70 chr4 167825258 167825672 -34502675 - MSTA LTR MaLR -27 401 1 315 239 82 22 chr4 167825837 167825971 -34502376 + L1ME4a LINE L1 5980 6121 0 407 299 37 0 chr4 167826235 167826363 -34501984 - MLT1I LTR MaLR -18 391 259 2836 184 71 34 chr4 167826363 167826996 -34501351 - MER39 LTR ERV1 0 707 3 633 246 57 38 chr4 167826996 167827207 -34501140 - MLT1I LTR MaLR -148 261 47 183 271 51 34 chr4 167827283 167827342 -34501005 + MER5A DNA MER1_type 106 165 -24 23 0 0 0 chr4 167827379 167827402 -34500945 + AT_rich Low_complexity Low_complexity 1 23 0 336 320 98 0 chr4 167827426 167827548 -34500799 - MER94 DNA DNA 0 134 1 649 348 32 16 chr4 167827889 167828199 -34500148 + MLT1I LTR MaLR 80 394 -15 23 0 0 0 chr4 167828491 167828514 -34499833 + AT_rich Low_complexity Low_complexity 1 23 0 338 313 62 37 chr4 167828514 167828757 -34499590 + L1MC1 LINE L1 2805 3053 -3093 7722 188 36 34 chr4 167828784 167831961 -34496386 + L1MC1 LINE L1 3154 6333 0 900 214 68 56 chr4 167832417 167832740 -34495607 + LTR37A LTR ERV1 38 364 -62 22 35 0 0 chr4 167832819 167832848 -34495499 + AT_rich Low_complexity Low_complexity 1 29 0 314 244 71 106 chr4 167832866 167833120 -34495227 + L1MC/D LINE L1 4472 4716 -1430 1262 216 42 7 chr4 167833160 167833447 -34494900 + AluJo SINE Alu 1 297 -15 355 290 102 26 chr4 167833555 167834316 -34494031 + L1MC/D LINE L1 4881 5286 -860 387 97 56 28 chr4 167834328 167834400 -34493947 - L1MA5A LINE L1 -3 6294 6221 243 213 16 16 chr4 167836191 167836252 -34492095 + GA-rich Low_complexity Low_complexity 1 61 0 31 58 0 0 chr4 167836920 167836972 -34491375 + AT_rich Low_complexity Low_complexity 1 52 0 245 382 127 1 chr4 167837815 167837973 -34490374 + MIR SINE MIR 37 213 -49 185 336 149 45 chr4 167838371 167838505 -34489842 - MIR3 SINE MIR -39 169 22 1810 180 55 60 chr4 167838778 167839212 -34489135 - MLT1D LTR MaLR -9 496 65 494 6 85 55 chr4 167839237 167839544 -34488803 + (TA)n Simple_repeat Simple_repeat 1 316 0 32 26 0 0 chr4 167839548 167839587 -34488760 + AT_rich Low_complexity Low_complexity 1 39 0 406 91 0 0 chr4 167839589 167839655 -34488692 + Tigger2 DNA MER2_type 187 252 -2466 * 1918 136 18 35 chr4 167839654 167839993 -34488354 + Tigger2 DNA MER2_type 412 744 -1974 1048 98 55 0 chr4 167840055 167840219 -34488128 + Tigger2 DNA MER2_type 2461 2633 -85 364 174 10 10 chr4 167840935 167841033 -34487314 + (TA)n Simple_repeat Simple_repeat 1 98 0 21 36 0 0 chr4 167841142 167841170 -34487177 + AT_rich Low_complexity Low_complexity 1 28 0 777 286 17 9 chr4 167841439 167841670 -34486677 - MIR SINE MIR 0 262 30 577 211 8 23 chr4 167841861 167841989 -34486358 - FLAM_A SINE Alu -7 126 1 207 0 0 0 chr4 167842006 167842029 -34486318 + (A)n Simple_repeat Simple_repeat 1 23 0 212 170 19 38 chr4 167842211 167842264 -34486083 + (TATG)n Simple_repeat Simple_repeat 4 55 0 257 357 76 0 chr4 167842274 167842431 -34485916 - MARNA DNA Mariner -212 374 206 442 326 89 35 chr4 167843415 167843627 -34484720 - L2 LINE L2 -264 3008 2809 2007 116 0 0 chr4 167843627 167843902 -34484445 - AluSx SINE Alu 0 312 38 442 326 89 35 chr4 167843902 167844130 -34484217 - L2 LINE L2 -463 2809 2551 539 322 118 26 chr4 167844224 167844528 -34483819 - L3 LINE CR1 -145 1432 1101 2738 107 18 0 chr4 167844560 167844954 -34483393 - MER41E LTR ERV1 -111 401 1 448 263 86 0 chr4 167845037 167845189 -34483158 - MER41E-int LTR ERV1 -2 6674 6510 198 359 0 0 chr4 167845240 167845293 -34483054 - L3 LINE CR1 -517 1060 1008 315 0 0 0 chr4 167846234 167846269 -34482078 + (TA)n Simple_repeat Simple_repeat 1 35 0 414 0 0 0 chr4 167846531 167846577 -34481770 + (CA)n Simple_repeat Simple_repeat 2 47 0 2297 83 0 0 chr4 167847260 167847561 -34480786 + AluSg SINE Alu 1 301 -9 1590 184 32 0 chr4 167848037 167848314 -34480033 - AluSx SINE Alu -26 286 1 189 0 0 0 chr4 167848319 167848340 -34480007 + (T)n Simple_repeat Simple_repeat 1 21 0 447 320 77 45 chr4 167848568 167848971 -34479376 - L1M4 LINE L1 -1496 4650 4235 265 292 159 15 chr4 167849033 167849407 -34478940 - L1M4 LINE L1 -1926 4220 3777 21 0 0 0 chr4 167849901 167849922 -34478425 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr4 167850317 167850359 -34477988 + AT_rich Low_complexity Low_complexity 1 42 0 525 188 139 0 chr4 167850365 167850466 -34477881 - FLAM_A SINE Alu -18 115 1 1586 177 40 20 chr4 167850505 167850805 -34477542 - AluJo SINE Alu -1 311 6 769 211 157 5 chr4 167850860 167851064 -34477283 - MIR SINE MIR -8 254 20 584 191 0 9 chr4 167851069 167851174 -34477173 - FLAM_A SINE Alu -38 104 1 480 35 0 0 chr4 167851193 167851251 -34477096 + (CA)n Simple_repeat Simple_repeat 2 59 0 2163 99 10 3 chr4 167851779 167852072 -34476275 - AluSg1 SINE Alu -14 295 1 30 0 0 0 chr4 167852170 167852200 -34476147 + AT_rich Low_complexity Low_complexity 1 30 0 192 77 0 0 chr4 167853769 167853795 -34474552 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 235 128 51 0 chr4 167853951 167853990 -34474357 + L1MC5 LINE L1 7820 7860 -101 277 82 41 0 chr4 167855903 167855952 -34472395 + (CA)n Simple_repeat Simple_repeat 2 52 0 2243 105 0 0 chr4 167856283 167856579 -34471768 + AluY SINE Alu 1 296 -15 24 0 0 0 chr4 167856630 167856654 -34471693 + AT_rich Low_complexity Low_complexity 1 24 0 520 294 201 0 chr4 167857299 167857493 -34470854 + MIR SINE MIR 3 235 -27 203 204 0 19 chr4 167857882 167857936 -34470411 + T-rich Low_complexity Low_complexity 1 53 0 267 125 0 0 chr4 167859681 167859721 -34468626 + Alu SINE Alu 1 40 -262 410 100 0 0 chr4 167859721 167859781 -34468566 + Alu SINE Alu 240 299 -13 315 131 0 98 chr4 167860183 167860244 -34468103 - L2 LINE L2 -1 3312 3258 274 164 0 98 chr4 167860755 167860816 -34467531 - L2 LINE L2 -1 3312 3258 1265 246 0 0 chr4 167862102 167862366 -34465981 + Tigger7 DNA MER2_type 1 264 -469 539 146 11 0 chr4 167862368 167862457 -34465890 + Tigger7 DNA MER2_type 2391 2480 -7 2101 131 0 29 chr4 167862483 167862796 -34465551 - AluSq SINE Alu -9 304 1 476 312 29 0 chr4 167864410 167864583 -34463764 + L1MC4a LINE L1 5403 5580 -2228 511 139 9 28 chr4 167864681 167864789 -34463558 + L1MC4a LINE L1 5780 5885 -1923 260 188 0 0 chr4 167865069 167865117 -34463230 + L1MC4a LINE L1 5882 5929 -1879 3871 153 42 14 chr4 167865588 167866276 -34462071 + MER39 LTR ERV1 1 707 0 245 218 13 0 chr4 167866382 167866460 -34461887 + (TA)n Simple_repeat Simple_repeat 2 80 0 6870 152 9 8 chr4 167866606 167867802 -34460545 + L1P3 LINE L1 990 2264 -4734 2064 165 49 49 chr4 167867803 167868293 -34460054 + LTR2B LTR ERV1 1 490 0 2496 101 2 35 chr4 167868293 167868691 -34459656 + Harlequin LTR ERV1 1 385 -6511 675 133 7 52 chr4 167868677 167868812 -34459535 + HERVE LTR ERV1 255 383 -7430 * 3652 80 8 2 chr4 167868806 167869322 -34459025 + HERVE LTR ERV1 262 780 -6116 4002 84 10 40 chr4 167869470 167870175 -34458172 + HERVE LTR ERV1 1815 2498 -4398 * 13606 60 5 3 chr4 167870164 167871929 -34456418 + HERVE LTR ERV1 3344 5110 -1786 6671 65 5 0 chr4 167871933 167872908 -34455439 + L1PA8A LINE L1 5135 6113 -18 189 74 0 0 chr4 167872911 167872938 -34455409 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 319 283 87 22 chr4 167873004 167873142 -34455205 + MIR SINE MIR 109 255 -7 255 294 8 111 chr4 167873611 167873737 -34454610 - L2 LINE L2 -10 3262 3150 281 164 0 18 chr4 167875132 167875187 -34453160 + LTR33A LTR ERVL 439 492 -31 706 281 36 0 chr4 167875645 167875837 -34452510 - MIR SINE MIR 0 262 64 242 342 103 0 chr4 167876702 167876819 -34451528 - MIR3 SINE MIR -65 143 15 835 173 22 120 chr4 167877102 167877240 -34451107 + MIR SINE MIR 10 119 -143 1872 148 50 0 chr4 167877240 167877517 -34450830 - AluSx SINE Alu -21 291 1 835 173 22 120 chr4 167877517 167877603 -34450744 + MIR SINE MIR 119 212 -50 828 209 5 29 chr4 167878062 167878268 -34450079 + MER3 DNA MER1_type 8 208 -1 682 239 122 10 chr4 167878279 167878476 -34449871 - MER58A DNA MER1_type -2 222 4 455 299 155 10 chr4 167878488 167878695 -34449652 + MIR SINE MIR 20 256 -6 336 388 67 34 chr4 167879683 167880235 -34448112 + L2 LINE L2 2007 2576 -738 32 67 0 0 chr4 167880469 167880529 -34447818 + AT_rich Low_complexity Low_complexity 1 60 0 335 321 168 0 chr4 167881416 167881553 -34446794 - MIR SINE MIR -72 190 31 1658 185 33 13 chr4 167882150 167882453 -34445894 + AluSx SINE Alu 1 309 -3 321 282 107 27 chr4 167882453 167882594 -34445753 - MIR3 SINE MIR -11 197 42 2024 62 8 11 chr4 167886666 167886926 -34441421 - AluY SINE Alu -18 293 35 222 324 27 0 chr4 167887017 167887091 -34441256 - L2 LINE L2 -226 3087 3012 281 333 37 4 chr4 167887681 167887832 -34440515 + MIR3 SINE MIR 5 160 -64 477 0 0 0 chr4 167887864 167887917 -34440430 + (TA)n Simple_repeat Simple_repeat 2 54 0 3015 210 88 45 chr4 167887948 167888535 -34439812 + L1MCb LINE L1 1 561 -6003 3581 165 24 2 chr4 167888535 167889170 -34439177 + L1PB4 LINE L1 5494 6142 -14 3015 210 88 45 chr4 167889170 167890284 -34438063 + L1MCb LINE L1 561 1764 -4800 1722 208 108 22 chr4 167890286 167890618 -34437729 + L1MCb LINE L1 2075 2377 -4187 2019 128 46 33 chr4 167890618 167890986 -34437361 - THE1C LTR MaLR 0 375 3 1722 208 108 22 chr4 167890986 167891211 -34437136 + L1MCb LINE L1 2377 2581 -3983 1948 164 7 13 chr4 167891211 167891521 -34436826 - AluJo SINE Alu 0 312 5 1722 208 108 22 chr4 167891521 167891962 -34436385 + L1MCb LINE L1 2581 3155 -3409 1076 155 35 9 chr4 167891967 167892193 -34436154 + L1MC2 LINE L1 6088 6319 -25 269 229 59 6 chr4 167892296 167892466 -34435881 + (TA)n Simple_repeat Simple_repeat 1 179 0 2112 110 43 3 chr4 167893197 167893496 -34434851 + AluSx SINE Alu 1 311 -1 819 281 158 12 chr4 167894048 167894246 -34434101 - L2 LINE L2 -4 3309 3141 333 0 0 0 chr4 167894246 167894283 -34434064 + (TG)n Simple_repeat Simple_repeat 2 38 0 819 281 158 12 chr4 167894283 167894587 -34433760 - L2 LINE L2 -172 3141 2725 1543 279 26 17 chr4 167894588 167895118 -34433229 - MLT1F LTR MaLR 0 542 8 881 272 59 22 chr4 167895121 167895393 -34432954 - L2 LINE L2 -1691 1623 1342 2496 214 41 11 chr4 167895764 167896038 -34432309 - LTR65 LTR ERV1 0 669 405 2490 140 51 10 chr4 167896038 167896453 -34431894 - MSTB1 LTR MaLR 0 432 1 2496 214 41 11 chr4 167896453 167896810 -34431537 - LTR65 LTR ERV1 -264 405 19 632 339 34 4 chr4 167897908 167898144 -34430203 - MIR SINE MIR -1 261 19 822 301 41 16 chr4 167899052 167899368 -34428979 + L2 LINE L2 1853 2176 -1138 318 205 359 0 chr4 167899371 167899488 -34428859 + L2 LINE L2 2304 2462 -852 230 206 0 29 chr4 167899997 167900065 -34428282 + MLT1K LTR MaLR 183 248 -340 249 254 0 0 chr4 167900755 167900810 -34427537 - MLT1K LTR MaLR -343 245 191 255 205 90 0 chr4 167900996 167901074 -34427273 + MLT1K LTR MaLR 504 588 0 459 337 98 46 chr4 167901193 167901540 -34426807 + L2 LINE L2 2442 2806 -508 3606 90 26 44 chr4 167902462 167903462 -34424885 + Harlequin LTR ERV1 350 4092 -3693 509 209 17 20 chr4 167903562 167903909 -34424438 + (TA)n Simple_repeat Simple_repeat 1 346 0 379 155 52 0 chr4 167903924 167904079 -34424268 + (TA)n Simple_repeat Simple_repeat 2 164 0 267 296 68 8 chr4 167904250 167904382 -34423965 - L1MEd LINE L1 -5489 630 491 194 105 66 26 chr4 167904735 167904811 -34423536 + (TA)n Simple_repeat Simple_repeat 1 79 0 22 0 0 0 chr4 167904990 167905012 -34423335 + AT_rich Low_complexity Low_complexity 1 22 0 981 250 4 21 chr4 167907952 167908188 -34420159 + MIR SINE MIR 15 246 -16 35 0 0 81 chr4 167908197 167908259 -34420088 + AT_rich Low_complexity Low_complexity 1 57 0 2236 96 34 0 chr4 167908263 167908556 -34419791 - AluSg SINE Alu -7 303 1 210 71 0 0 chr4 167909683 167909711 -34418636 + (CA)n Simple_repeat Simple_repeat 1 28 0 1860 189 62 51 chr4 167910891 167911341 -34417006 + Charlie1a DNA MER1_type 49 503 -952 643 188 134 34 chr4 167911334 167911573 -34416774 + Charlie1a DNA MER1_type 1193 1455 0 * 231 280 0 67 chr4 167911789 167911864 -34416483 - L2 LINE L2 -5 3267 3198 205 273 0 0 chr4 167911879 167911923 -34416424 + L2 LINE L2 3189 3232 -81 283 297 95 12 chr4 167911923 167912121 -34416226 + MIR SINE MIR 16 231 -31 588 206 118 0 chr4 167912524 167912660 -34415687 - MER5C DNA MER1_type -170 154 3 631 218 0 0 chr4 167912739 167912849 -34415498 + FLAM_A SINE Alu 1 110 -32 308 188 145 0 chr4 167913355 167913424 -34414923 + L2 LINE L2 3193 3271 -1 2943 165 15 0 chr4 167915593 167916072 -34412275 + MER66B LTR ERV1 1 486 0 589 311 83 4 chr4 167916675 167916903 -34411444 - MIR SINE MIR -14 248 3 563 255 55 0 chr4 167916907 167917052 -34411295 - MIR SINE MIR -60 202 50 862 279 19 27 chr4 167917145 167917403 -34410944 + MIR SINE MIR 1 256 -6 332 346 26 0 chr4 167918470 167918623 -34409724 + L3 LINE CR1 1251 1407 -170 24 32 0 0 chr4 167918878 167918909 -34409438 + AT_rich Low_complexity Low_complexity 1 31 0 1668 275 122 9 chr4 167919049 167919784 -34408563 - L2 LINE L2 -188 3125 2316 1753 185 0 10 chr4 167919808 167920111 -34408236 + AluJb SINE Alu 1 300 -12 706 188 174 0 chr4 167920111 167920249 -34408098 + AluJb SINE Alu 134 295 -17 482 178 11 11 chr4 167920348 167920438 -34407909 - MER7A DNA MER2_type -257 89 2 2268 61 0 3 chr4 167920524 167920819 -34407528 - L1PA5 LINE L1 0 6154 5861 505 0 0 0 chr4 167921083 167921141 -34407206 - L1P LINE L1 -736 5419 5362 * 7544 29 1 4 chr4 167921137 167922056 -34406291 + L1P LINE L1 3224 4139 -2007 996 208 28 5 chr4 167922060 167922272 -34406075 - MER20 DNA MER1_type -2 217 1 514 244 38 15 chr4 167922842 167922973 -34405374 - MLT1I LTR MaLR -1 408 275 620 114 23 69 chr4 167923007 167923138 -34405209 - L1MA4 LINE L1 0 6300 6176 246 289 4 54 chr4 167923523 167923678 -34404669 + MLT1K LTR MaLR 135 264 -324 2366 125 13 50 chr4 167923699 167924156 -34404191 - L1MA4 LINE L1 0 6300 5861 850 271 69 80 chr4 167924542 167925397 -34402950 - HAL1b LINE L1 -437 911 66 351 0 0 0 chr4 167926803 167926842 -34401505 + (CA)n Simple_repeat Simple_repeat 2 40 0 379 214 24 12 chr4 167927093 167927177 -34401170 - L2 LINE L2 0 3313 3229 231 364 10 40 chr4 167928643 167928742 -34399605 - MIR SINE MIR -128 134 39 214 220 11 11 chr4 167930569 167930660 -34397687 + (TA)n Simple_repeat Simple_repeat 2 92 0 308 307 79 0 chr4 167930882 167930996 -34397351 - L2 LINE L2 -9 3304 3182 1926 164 124 6 chr4 167931062 167931410 -34396937 - MSTA LTR MaLR -39 389 1 525 348 228 14 chr4 167931419 167932048 -34396299 - L2 LINE L2 -207 3065 2290 2599 43 0 0 chr4 167932053 167932356 -34395991 + AluY SINE Alu 1 303 -8 344 182 26 13 chr4 167932359 167932436 -34395911 - MER20 DNA MER1_type -4 215 138 765 329 4 8 chr4 167932537 167932771 -34395576 - MIR SINE MIR -17 245 13 244 322 74 0 chr4 167932778 167932899 -34395448 + MER94 DNA DNA 4 133 -1 815 246 143 9 chr4 167933044 167933268 -34395079 + MIR SINE MIR 9 262 0 502 302 68 10 chr4 167933982 167934187 -34394160 + L2 LINE L2 3096 3312 -1 21 0 0 0 chr4 167934626 167934647 -34393700 + AT_rich Low_complexity Low_complexity 1 21 0 277 314 175 0 chr4 167934705 167934855 -34393492 - MIR SINE MIR -62 146 21 22 35 0 0 chr4 167934943 167934972 -34393375 + AT_rich Low_complexity Low_complexity 1 29 0 314 253 17 152 chr4 167935056 167935234 -34393113 - MIR SINE MIR -4 258 105 278 327 33 83 chr4 167935886 167936044 -34392303 - MIR SINE MIR -61 147 3 208 193 35 53 chr4 167937232 167937289 -34391058 - L2 LINE L2 0 3272 3217 571 226 16 8 chr4 167937500 167937624 -34390723 - L2 LINE L2 -1 3312 3188 633 229 60 108 chr4 167937919 167938168 -34390179 + MIR SINE MIR 6 242 -20 2267 111 0 0 chr4 167938168 167938465 -34389882 - AluSg SINE Alu -13 297 1 262 346 50 6 chr4 167938661 167938820 -34389527 - MIR SINE MIR -45 217 52 298 309 73 18 chr4 167939347 167939457 -34388890 - L2 LINE L2 -19 3253 3138 224 309 8 57 chr4 167939799 167939922 -34388425 - L2 LINE L2 -508 2806 2690 1020 229 75 51 chr4 167941532 167941864 -34386483 + MER58B DNA MER1_type 2 341 0 29 47 0 0 chr4 167941897 167941940 -34386407 + AT_rich Low_complexity Low_complexity 1 43 0 387 287 7 56 chr4 167941987 167942130 -34386217 + L2 LINE L2 3159 3294 -19 404 328 99 22 chr4 167942201 167942433 -34385914 - MIR SINE MIR -10 252 3 309 175 100 12 chr4 167942485 167942565 -34385782 + L1ME4a LINE L1 5962 6048 -73 226 322 61 35 chr4 167944512 167944627 -34383720 - MIR3 SINE MIR -31 177 60 264 87 152 0 chr4 167944982 167945028 -34383319 + MADE1 DNA Mariner 1 53 -27 * 2656 103 86 12 chr4 167945027 167945445 -34382902 - MER4D LTR ERV1 -382 521 73 8585 148 11 17 chr4 167945461 167948113 -34380234 - L1PB1 LINE L1 0 6151 3512 1241 239 66 75 chr4 167948133 167948559 -34379788 - MLT2B3 LTR ERVL 0 554 133 192 420 31 5 chr4 167948729 167948953 -34379394 - MIR SINE MIR -12 250 21 203 320 0 20 chr4 167950982 167951032 -34377315 - MIR SINE MIR -141 67 19 25 31 0 0 chr4 167954133 167954165 -34374182 + AT_rich Low_complexity Low_complexity 1 32 0 24 67 0 0 chr4 167955776 167955821 -34372526 + AT_rich Low_complexity Low_complexity 1 45 0 1092 144 77 0 chr4 167956301 167956496 -34371851 + L1PA16 LINE L1 5957 6166 0 639 228 165 21 chr4 167956667 167956904 -34371443 + LTR37B LTR ERV1 198 468 0 2168 115 3 0 chr4 167957007 167957302 -34371045 - AluSx SINE Alu -16 296 1 377 253 0 21 chr4 167957323 167957418 -34370929 - MIR3 SINE MIR -33 175 83 2122 28 0 64 chr4 167958621 167958903 -34369444 + L1PA7 LINE L1 5885 6148 -6 663 229 12 6 chr4 167959763 167959929 -34368418 - L1 LINE L1 -2669 3477 3311 335 134 90 0 chr4 167959929 167959996 -34368351 - MER4B LTR ERV1 -537 73 1 354 294 7 37 chr4 167960013 167960149 -34368198 - MIR SINE MIR -76 186 55 307 244 59 74 chr4 167960775 167960910 -34367437 - MIR SINE MIR -25 237 105 1484 258 50 16 chr4 167960911 167961287 -34367060 - LTR40a LTR ERVL 0 519 131 2412 63 0 3 chr4 167961324 167961625 -34366722 + AluY SINE Alu 1 300 -11 234 333 54 43 chr4 167961678 167961771 -34366576 - MIR SINE MIR -154 108 15 300 310 63 35 chr4 167963135 167963309 -34365038 - L1MC/D LINE L1 -2245 5563 5385 1489 145 62 40 chr4 167963335 167963611 -34364736 - AluJo SINE Alu -30 282 1 462 313 62 29 chr4 167963615 167963887 -34364460 - L1MC/D LINE L1 -757 5389 5109 22 0 0 0 chr4 167963901 167963923 -34364424 + AT_rich Low_complexity Low_complexity 1 22 0 1646 179 3 36 chr4 167963923 167964230 -34364117 - AluJo SINE Alu -15 297 1 753 263 49 4 chr4 167964846 167965093 -34363254 + MIR SINE MIR 1 258 -4 37 39 0 0 chr4 167965139 167965190 -34363157 + AT_rich Low_complexity Low_complexity 1 51 0 222 329 82 41 chr4 167965248 167965394 -34362953 + L2 LINE L2 3112 3263 -9 23 0 0 0 chr4 167965547 167965570 -34362777 + AT_rich Low_complexity Low_complexity 1 23 0 255 239 82 75 chr4 167965724 167965858 -34362489 - L2 LINE L2 -1 3271 3137 207 408 72 22 chr4 167967766 167968085 -34360262 + L2 LINE L2 2330 2664 -650 2220 234 63 35 chr4 167968222 167969056 -34359291 - L1MC5 LINE L1 -44 7917 7060 3389 162 11 1 chr4 168019268 168020338 -34308009 + L1P5 LINE L1 4590 5667 -484 21 36 0 0 chr4 168021290 168021318 -34307029 + AT_rich Low_complexity Low_complexity 1 28 0 2311 92 3 0 chr4 168022154 168022458 -34305889 - AluY SINE Alu -2 309 5 1415 118 50 5 chr4 168022544 168022764 -34305583 - MER30 DNA MER1_type 0 230 1 631 288 72 10 chr4 168022801 168023041 -34305306 + MIR SINE MIR 3 254 -8 19687 53 3 15 chr4 168023388 168025753 -34302594 - L1P LINE L1 -1977 4169 1841 2117 104 0 0 chr4 168025753 168026063 -34302284 + AluY SINE Alu 1 311 0 19687 53 3 15 chr4 168026063 168026453 -34301894 - L1P LINE L1 -4305 1841 1448 585 125 0 10 chr4 168026611 168026730 -34301617 - L1PA14 LINE L1 -106 6055 5938 949 246 89 58 chr4 168027232 168027394 -34300953 + L1MC4 LINE L1 7504 7660 -335 2132 105 34 0 chr4 168027394 168027521 -34300826 + AluSg SINE Alu 1 122 -188 243 0 0 0 chr4 168027521 168027548 -34300799 + (TA)n Simple_repeat Simple_repeat 1 27 0 2132 105 34 0 chr4 168027548 168027715 -34300632 + AluSg SINE Alu 122 305 -5 949 246 89 58 chr4 168027715 168028086 -34300261 + L1MC4 LINE L1 7660 7995 0 324 0 0 0 chr4 168028245 168028281 -34300066 + (TG)n Simple_repeat Simple_repeat 1 36 0 10013 37 6 1 chr4 168028831 168030844 -34297503 + L1PA5 LINE L1 4135 6153 -1 199 402 8 8 chr4 168031376 168031498 -34296849 + MIR3 SINE MIR 40 161 -47 350 265 140 71 chr4 168031677 168032099 -34296248 + MLT1L LTR MaLR 8 458 -157 202 268 0 49 chr4 168032425 168032507 -34295840 + CT-rich Low_complexity Low_complexity 3 80 0 * 338 261 40 23 chr4 168032461 168032637 -34295710 + T-rich Low_complexity Low_complexity 2 180 0 27 0 0 0 chr4 168033001 168033028 -34295319 + AT_rich Low_complexity Low_complexity 1 27 0 205 302 19 0 chr4 168033914 168033967 -34294380 - L2 LINE L2 -255 3058 3005 22 0 0 0 chr4 168034102 168034124 -34294223 + AT_rich Low_complexity Low_complexity 1 22 0 2391 78 0 0 chr4 168034137 168034433 -34293914 - AluSg SINE Alu -14 296 1 232 301 158 8 chr4 168034726 168034859 -34293488 + L2 LINE L2 2221 2373 -941 2514 36 3 0 chr4 168035147 168035450 -34292897 - L1PA4 LINE L1 -3 6152 5849 2226 92 34 0 chr4 168035812 168036105 -34292242 - AluSp SINE Alu -10 303 1 645 321 101 49 chr4 168036197 168036999 -34291348 + L2 LINE L2 2468 3308 -5 2292 78 0 23 chr4 168037653 168037959 -34290388 - AluY SINE Alu -12 299 1 1623 166 29 26 chr4 168038213 168038629 -34289718 - pTR5 LTR ERV1 -1279 1159 743 458 209 209 0 chr4 168038639 168038749 -34289598 + MER5A DNA MER1_type 57 189 0 634 251 83 112 chr4 168038870 168039415 -34288932 + MLT2F LTR ERVL 58 586 -77 326 289 12 60 chr4 168039417 168039583 -34288764 + MLT2E LTR ERVL 471 628 0 500 192 83 8 chr4 168039648 168039768 -34288579 + THE1C LTR MaLR 2 130 -245 1859 134 68 3 chr4 168040448 168040740 -34287607 + AluSx SINE Alu 1 311 -1 1967 138 10 10 chr4 168041329 168041633 -34286714 + AluSc SINE Alu 4 307 -2 439 214 223 0 chr4 168042106 168042209 -34286138 - MER5A DNA MER1_type -3 186 61 37 0 0 0 chr4 168042209 168042246 -34286101 + AT_rich Low_complexity Low_complexity 1 37 0 798 144 0 65 chr4 168042246 168042385 -34285962 - FLAM_C SINE Alu -3 130 1 294 293 0 0 chr4 168042385 168042460 -34285887 - MER5A DNA MER1_type -114 75 1 517 206 100 62 chr4 168042671 168042831 -34285516 + MLT1H LTR MaLR 382 547 -2 423 257 7 52 chr4 168042840 168042872 -34285475 - MIR SINE MIR -10 252 220 1530 216 71 6 chr4 168042872 168043223 -34285124 - MLT1A2 LTR MaLR 0 374 1 423 257 7 52 chr4 168043223 168043326 -34285021 - MIR SINE MIR -42 220 123 28 29 0 0 chr4 168043719 168043754 -34284593 + AT_rich Low_complexity Low_complexity 1 35 0 598 218 43 21 chr4 168043900 168044088 -34284259 - MER95 LTR ERV 0 431 240 359 319 44 16 chr4 168046457 168046639 -34281708 + L2 LINE L2 2791 2977 -337 292 211 23 40 chr4 168046746 168046921 -34281426 + (TAA)n Simple_repeat Simple_repeat 3 174 0 266 318 134 11 chr4 168046951 168047130 -34281217 + MIR SINE MIR 13 213 -49 1850 151 3 20 chr4 168047730 168048034 -34280313 - AluJb SINE Alu -13 299 1 207 258 34 34 chr4 168048412 168048501 -34279846 + MIR3 SINE MIR 117 205 -3 204 40 0 0 chr4 168048662 168048687 -34279660 + (TA)n Simple_repeat Simple_repeat 2 26 0 2192 102 0 30 chr4 168048687 168048991 -34279356 - AluSq SINE Alu -18 295 1 181 278 153 0 chr4 168050182 168050254 -34278093 + MIR SINE MIR 64 146 -116 452 313 90 26 chr4 168050342 168050575 -34277772 + MIR SINE MIR 3 250 -12 228 246 154 18 chr4 168050888 168050998 -34277349 + L1PB4 LINE L1 6015 6139 -17 2462 73 3 3 chr4 168051224 168051526 -34276821 + AluSp SINE Alu 1 302 -11 2471 142 36 28 chr4 168053350 168053852 -34274495 + L1PA16 LINE L1 5668 6173 0 21 0 0 0 chr4 168053990 168054011 -34274336 + AT_rich Low_complexity Low_complexity 1 21 0 1186 204 64 36 chr4 168054444 168054724 -34273623 + AluJo SINE Alu 1 288 -14 2240 102 0 0 chr4 168056086 168056418 -34271929 - L1P LINE L1 -4759 1387 1056 685 207 8 0 chr4 168056844 168056965 -34271382 + FLAM_C SINE Alu 4 125 -8 45 19 0 0 chr4 168057105 168057157 -34271190 + AT_rich Low_complexity Low_complexity 1 52 0 3655 36 7 2 chr4 168059901 168060349 -34267998 - L1PA2 LINE L1 0 6155 5706 23 68 0 0 chr4 168060763 168060807 -34267540 + AT_rich Low_complexity Low_complexity 1 44 0 199 239 0 0 chr4 168062169 168062215 -34266132 + L2 LINE L2 3227 3272 0 235 368 0 11 chr4 168062306 168062401 -34265946 - MER5A DNA MER1_type -50 139 46 416 213 63 8 chr4 168063145 168063272 -34265075 - MER103 DNA DNA 0 166 33 859 219 27 16 chr4 168063353 168063540 -34264807 + MER5A DNA MER1_type 1 189 0 364 335 13 26 chr4 168063614 168063769 -34264578 - MER5A DNA MER1_type -11 178 26 2294 104 0 3 chr4 168064007 168064306 -34264041 - AluSg SINE Alu -12 298 1 457 150 0 0 chr4 168064937 168065017 -34263330 - L1MA2 LINE L1 0 6304 6225 2135 159 21 42 chr4 168066127 168066561 -34261786 + MSTB1 LTR MaLR 1 425 -7 418 255 29 0 chr4 168066588 168066690 -34261657 + MIR SINE MIR 115 219 -43 21 57 0 0 chr4 168066766 168066801 -34261546 + AT_rich Low_complexity Low_complexity 1 35 0 385 325 59 12 chr4 168066977 168067146 -34261201 + MIR SINE MIR 86 262 0 2087 126 27 0 chr4 168067229 168067522 -34260825 + AluSx SINE Alu 1 301 -11 1291 251 50 29 chr4 168067907 168068362 -34259985 + MER74B LTR ERVL 76 540 -82 279 284 91 17 chr4 168068208 168068384 -34259963 - MER88 LTR ERVL -198 266 78 * 1264 218 51 30 chr4 168068688 168068755 -34259592 - MLT1C LTR MaLR 0 467 403 2194 99 10 3 chr4 168068755 168069058 -34259289 + AluSc SINE Alu 1 305 -4 1264 218 51 30 chr4 168069058 168069384 -34258963 - MLT1C LTR MaLR -64 403 66 285 98 0 0 chr4 168069565 168069606 -34258741 + (A)n Simple_repeat Simple_repeat 1 41 0 2122 155 3 3 chr4 168069826 168070181 -34258166 + THE1A LTR MaLR 1 355 0 1019 148 6 6 chr4 168070414 168070576 -34257771 - FRAM SINE Alu -15 161 1 945 285 90 9 chr4 168071070 168071589 -34256758 - MLT2E LTR ERVL -20 608 1 21 57 0 0 chr4 168072832 168072867 -34255480 + AT_rich Low_complexity Low_complexity 1 35 0 333 314 129 29 chr4 168073312 168073653 -34254694 - L2 LINE L2 -609 2705 2331 2273 122 0 0 chr4 168073791 168074126 -34254221 - L1PB1 LINE L1 -8 6143 5809 273 206 32 16 chr4 168074249 168074312 -34254035 + L2 LINE L2 3235 3298 -15 2110 185 78 15 chr4 168074520 168074995 -34253352 + MLT1D LTR MaLR 1 505 0 439 328 42 16 chr4 168075268 168075460 -34252887 - MIR SINE MIR -30 232 36 1177 289 44 24 chr4 168075982 168076056 -34252291 - L1MEc LINE L1 -5739 657 586 3025 125 100 0 chr4 168076056 168076535 -34251812 - MER1A DNA MER1_type 0 527 1 1177 289 44 24 chr4 168076535 168076916 -34251431 - L1MEc LINE L1 -5810 586 193 825 76 8 8 chr4 168076913 168077044 -34251303 + THE1C-int LTR MaLR 1444 1574 -6 * 2510 115 11 16 chr4 168077051 168077426 -34250921 + THE1C LTR MaLR 3 375 0 342 141 128 13 chr4 168077426 168077504 -34250843 - L1M2 LINE L1 -721 5591 5505 2053 100 24 24 chr4 168079252 168079591 -34248756 - MER39 LTR ERV1 -10 697 359 196 182 164 0 chr4 168080167 168080222 -34248125 - L3b LINE CR1 -173 1410 1347 22 70 0 0 chr4 168080908 168080951 -34247396 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 168081277 168081298 -34247049 + AT_rich Low_complexity Low_complexity 1 21 0 260 186 0 0 chr4 168081401 168081444 -34246903 + Tigger3(Golem) DNA MER2_type 2996 3038 0 1431 268 53 42 chr4 168081593 168081928 -34246419 - L1M4c LINE L1 -3568 2814 2484 1696 181 3 29 chr4 168081928 168082243 -34246104 - AluJb SINE Alu -5 307 1 1431 268 53 42 chr4 168082243 168082961 -34245386 - L1M4c LINE L1 -3898 2484 1784 525 245 39 27 chr4 168083005 168083260 -34245087 - L1M4c LINE L1 -4786 1596 1290 2521 143 38 7 chr4 168083656 168084075 -34244272 + MSTB1 LTR MaLR 1 432 0 23 68 0 0 chr4 168084218 168084262 -34244085 + AT_rich Low_complexity Low_complexity 1 44 0 379 115 0 39 chr4 168084858 168084936 -34243411 + (GAAA)n Simple_repeat Simple_repeat 3 77 0 40 0 0 0 chr4 168084979 168085019 -34243328 + AT_rich Low_complexity Low_complexity 1 40 0 2430 104 0 0 chr4 168085081 168085390 -34242957 - AluSq SINE Alu -4 309 1 30 0 0 0 chr4 168085435 168085465 -34242882 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 168085653 168085681 -34242666 + AT_rich Low_complexity Low_complexity 1 28 0 6932 63 10 0 chr4 168086410 168087905 -34240442 + L1PA8 LINE L1 4665 6169 -3 327 136 0 0 chr4 168087980 168088039 -34240308 + (T)n Simple_repeat Simple_repeat 1 59 0 1922 157 17 0 chr4 168088176 168088476 -34239871 - AluJb SINE Alu -7 305 1 680 333 138 19 chr4 168088486 168088951 -34239396 + L2 LINE L2 2140 2659 -655 401 221 0 96 chr4 168089141 168089245 -34239102 + L2 LINE L2 3179 3272 0 1162 178 91 40 chr4 168089861 168090136 -34238211 - MER93b LTR ERV1 -21 352 64 1121 191 20 130 chr4 168090352 168090744 -34237603 + MLT1B LTR MaLR 1 349 -41 202 244 0 0 chr4 168090796 168090841 -34237506 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 795 241 72 54 chr4 168092096 168092626 -34235721 + MER34B LTR ERV1 5 537 -5 611 263 121 45 chr4 168093242 168093466 -34234881 - MIR SINE MIR -5 257 17 2986 66 12 0 chr4 168093594 168094163 -34234184 - L1PA8 LINE L1 -526 5646 5071 3991 64 2 0 chr4 168094163 168094673 -34233674 + L1PA8 LINE L1 5659 6172 0 2382 73 3 7 chr4 168096196 168096498 -34231849 - AluY SINE Alu -10 301 1 187 349 16 0 chr4 168097393 168097456 -34230891 + MIR SINE MIR 86 149 -113 561 247 38 32 chr4 168098156 168098314 -34230033 - MER5B DNA MER1_type -3 175 17 290 349 47 27 chr4 168100043 168100192 -34228155 + MER5B DNA MER1_type 27 178 0 5187 65 0 4 chr4 168100193 168100943 -34227404 - L1P LINE L1 -2726 3420 2674 616 214 0 7 chr4 168101226 168101380 -34226967 - L1P LINE L1 -3343 2803 2651 15871 36 9 3 chr4 168101380 168104092 -34224255 + L1PA5 LINE L1 3427 6154 0 204 200 0 36 chr4 168105916 168105971 -34222376 + T-rich Low_complexity Low_complexity 1 53 0 1044 253 45 51 chr4 168106517 168106734 -34221613 + L1ME2 LINE L1 4650 4867 -1279 219 36 0 0 chr4 168106734 168106762 -34221585 + (CAATT)n Simple_repeat Simple_repeat 2 29 0 1044 253 45 51 chr4 168106762 168107030 -34221317 + L1ME2 LINE L1 4867 5132 -1014 18751 148 55 47 chr4 168107041 168110923 -34217424 + L1MA2 LINE L1 15 3983 -3582 3910 107 19 0 chr4 168110923 168111293 -34217054 - L1PA14 LINE L1 -3 6158 5772 219 69 0 0 chr4 168111293 168111322 -34217025 + (TA)n Simple_repeat Simple_repeat 1 29 0 3910 107 19 0 chr4 168111322 168111523 -34216824 - L1PA14 LINE L1 -389 5772 5576 18751 148 55 47 chr4 168111523 168112510 -34215837 + L1MA2 LINE L1 3983 4960 -2605 5894 157 29 11 chr4 168112510 168114422 -34213925 + L1MA2 LINE L1 5653 7573 -1 1960 117 21 12 chr4 168114422 168114748 -34213599 + L1MA2 LINE L1 5973 6301 -3 980 243 27 4 chr4 168114788 168115047 -34213300 + L1ME2 LINE L1 5266 5530 -640 3542 42 0 66 chr4 168115061 168115560 -34212787 - L1PA8 LINE L1 -4 6168 5703 970 59 0 0 chr4 168115614 168115732 -34212615 - L1PA8 LINE L1 -476 5696 5579 2411 147 30 8 chr4 168115928 168116558 -34211789 - L1P3 LINE L1 -531 5641 5000 1500 217 3 0 chr4 168116549 168116872 -34211475 + L1ME2 LINE L1 5586 5909 -255 * 935 118 147 6 chr4 168117655 168117825 -34210522 - L1MA5 LINE L1 -35 6265 6072 332 308 41 31 chr4 168118024 168118219 -34210128 - HAL1b LINE L1 -469 879 683 2104 114 21 0 chr4 168118271 168118561 -34209786 - AluSq SINE Alu -17 296 1 2169 119 0 0 chr4 168118573 168118859 -34209488 - AluSq SINE Alu -24 289 4 1031 132 0 0 chr4 168118871 168119030 -34209317 - L1MA4A LINE L1 -362 5941 5783 192 179 0 0 chr4 168119033 168119072 -34209275 + (TA)n Simple_repeat Simple_repeat 2 40 0 330 300 0 0 chr4 168119072 168119162 -34209185 - L1MC4 LINE L1 -1339 6703 6614 1444 133 0 8 chr4 168119171 168119405 -34208942 - L1P5 LINE L1 -365 5791 5560 448 246 286 5 chr4 168120916 168121115 -34207232 - MIR SINE MIR -2 260 6 1881 111 4 4 chr4 168121916 168122169 -34206178 + AluSx SINE Alu 7 259 -53 2116 121 0 0 chr4 168122197 168122477 -34205870 + AluSp SINE Alu 13 292 -21 336 325 55 1 chr4 168123273 168123377 -34204970 + MIR SINE MIR 38 146 -62 257 254 42 0 chr4 168124295 168124366 -34203981 + MIR SINE MIR 120 193 -69 425 318 30 0 chr4 168124758 168124890 -34203457 - L2 LINE L2 0 3272 3137 259 545 14 44 chr4 168124897 168125172 -34203175 - L2 LINE L2 -645 2669 2403 1544 147 87 4 chr4 168126035 168126300 -34202047 - AluJb SINE Alu -17 295 9 261 191 107 0 chr4 168126342 168126426 -34201921 - Tigger1 DNA MER2_type -1 2417 2325 189 408 33 0 chr4 168126580 168126700 -34201647 + L2 LINE L2 2925 3048 -224 1618 220 26 104 chr4 168126771 168127386 -34200961 - LTR9 LTR ERV1 0 612 51 2267 108 16 0 chr4 168127386 168127693 -34200654 - AluSq SINE Alu -1 312 1 1618 220 26 104 chr4 168127693 168127741 -34200606 - LTR9 LTR ERV1 -561 51 1 478 331 74 36 chr4 168127804 168128545 -34199802 - L2 LINE L2 -22 3291 2521 1896 107 29 13 chr4 168129477 168129996 -34198351 - L1MC1 LINE L1 -1 6332 5671 5517 100 95 87 chr4 168130793 168132314 -34196033 - pTR5 LTR ERV1 0 2438 744 2206 87 17 3 chr4 168132414 168132703 -34195644 + AluSq SINE Alu 1 293 -20 227 143 71 54 chr4 168132721 168132777 -34195570 - L1MC4 LINE L1 -5 8037 7981 1435 235 248 6 chr4 168132786 168133306 -34195041 - L1MC4 LINE L1 -153 7889 7244 2545 211 58 8 chr4 168133312 168133900 -34194447 - L1MC4 LINE L1 -953 7089 6473 27 73 0 0 chr4 168135080 168135135 -34193212 + AT_rich Low_complexity Low_complexity 1 55 0 229 121 0 52 chr4 168135149 168135207 -34193140 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 592 224 8 37 chr4 168135222 168135356 -34192991 - MER7C DNA MER2_type -459 143 14 * 743 207 66 66 chr4 168135347 168135540 -34192807 + LTR37A LTR ERV1 85 280 -146 369 0 0 0 chr4 168135540 168135581 -34192766 + (TG)n Simple_repeat Simple_repeat 1 41 0 743 207 66 66 chr4 168135581 168135706 -34192641 + LTR37A LTR ERV1 279 403 -23 230 250 0 67 chr4 168135834 168135894 -34192453 + LTR48 LTR ERV1 156 211 -576 2529 7 0 0 chr4 168136525 168136798 -34191549 - AluYa5 SINE Alu -4 307 35 2357 109 0 0 chr4 168137147 168137459 -34190888 + AluSx SINE Alu 1 312 0 1868 177 17 3 chr4 168137466 168137822 -34190525 - MER46B DNA MER2_type 0 236 1 293 264 40 40 chr4 168138435 168138560 -34189787 + MLT1L LTR MaLR 491 615 0 240 291 79 71 chr4 168139539 168139666 -34188681 + MIR SINE MIR 21 148 -60 957 166 12 0 chr4 168139753 168139916 -34188431 - FRAM SINE Alu -11 165 1 21 0 0 0 chr4 168140576 168140597 -34187750 + AT_rich Low_complexity Low_complexity 1 21 0 743 170 18 61 chr4 168141413 168141578 -34186769 + FRAM SINE Alu 1 158 -8 225 200 20 0 chr4 168141636 168141686 -34186661 + Alu SINE Alu 246 296 -4 5531 151 31 23 chr4 168141850 168143285 -34185062 - L1MA6 LINE L1 -10 6290 4852 21 0 0 0 chr4 168144060 168144081 -34184266 + AT_rich Low_complexity Low_complexity 1 21 0 234 263 70 18 chr4 168144500 168144614 -34183733 + L1MC4a LINE L1 5815 5934 -1874 919 167 111 0 chr4 168144974 168145154 -34183193 - MER39 LTR ERV1 -507 200 1 1513 228 68 20 chr4 168145725 168146164 -34182183 + L1MEc LINE L1 61 520 -5876 36 62 0 0 chr4 168146254 168146318 -34182029 + AT_rich Low_complexity Low_complexity 1 64 0 438 303 190 14 chr4 168146705 168146916 -34181431 - MIR SINE MIR -10 252 5 1367 144 10 0 chr4 168147341 168147543 -34180804 + AluJb SINE Alu 1 204 -108 270 0 0 0 chr4 168147556 168147586 -34180761 + (CA)n Simple_repeat Simple_repeat 1 30 0 1131 212 49 49 chr4 168147594 168147915 -34180432 - MLT1A2 LTR MaLR -41 426 21 21 82 0 0 chr4 168148004 168148053 -34180294 + AT_rich Low_complexity Low_complexity 1 49 0 1187 170 28 0 chr4 168148556 168148768 -34179579 + MER20 DNA MER1_type 2 219 0 1838 137 165 0 chr4 168148815 168149137 -34179210 + MER39 LTR ERV1 3 377 -330 805 267 70 51 chr4 168149137 168149508 -34178839 + L2 LINE L2 1435 1812 -1502 1645 177 3 24 chr4 168149515 168149809 -34178538 - AluJo SINE Alu -24 288 1 1987 137 7 10 chr4 168150747 168151053 -34177294 - AluJb SINE Alu -7 305 1 2776 152 14 73 chr4 168151065 168151652 -34176695 - L1MA7 LINE L1 -1 6290 5739 795 308 21 8 chr4 168151740 168151977 -34176370 - MIR SINE MIR -20 242 3 43389 44 1 0 chr4 168152112 168157437 -34170910 + L1P LINE L1 2 5327 -819 712 158 99 0 chr4 168158039 168158191 -34170156 - L1MD3 LINE L1 -18 7977 7811 249 239 317 14 chr4 168158530 168158672 -34169675 + MIR SINE MIR 21 205 -57 242 322 0 17 chr4 168160929 168161035 -34167312 + CT-rich Low_complexity Low_complexity 1 104 0 216 200 0 0 chr4 168161057 168161102 -34167245 + (CA)n Simple_repeat Simple_repeat 2 46 0 1040 205 36 0 chr4 168162722 168162917 -34165430 - MER20 DNA MER1_type -17 202 1 201 39 0 0 chr4 168162953 168162979 -34165368 + (TTA)n Simple_repeat Simple_repeat 1 26 0 328 333 89 0 chr4 168164665 168164800 -34163547 + MIR3 SINE MIR 51 197 -11 32 0 0 0 chr4 168165214 168165246 -34163101 + AT_rich Low_complexity Low_complexity 1 32 0 3279 162 93 12 chr4 168165248 168165710 -34162637 - L1MA6 LINE L1 -9 6291 5755 539 29 14 0 chr4 168165710 168165779 -34162568 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 3279 162 93 12 chr4 168165779 168165995 -34162352 - L1MA6 LINE L1 -545 5755 5558 714 171 25 50 chr4 168165999 168166199 -34162148 + MER6 DNA MER2_type -61 865 0 230 188 0 0 chr4 168166199 168166247 -34162100 - L1MA6 LINE L1 -744 5559 5512 989 128 11 0 chr4 168166490 168166670 -34161677 - MER33 DNA MER1_type -7 317 136 522 184 0 0 chr4 168166670 168166773 -34161574 - L1PA16 LINE L1 -1 6165 6063 431 48 81 0 chr4 168166773 168166835 -34161512 + L1P4 LINE L1 5542 5608 -558 476 241 52 0 chr4 168166846 168166961 -34161386 - MER33 DNA MER1_type -262 62 1 768 251 157 58 chr4 168167937 168168300 -34160047 - MLT1I LTR MaLR -2 407 9 24 53 0 0 chr4 168168985 168169023 -34159324 + AT_rich Low_complexity Low_complexity 1 38 0 593 200 188 6 chr4 168171266 168171426 -34156921 + MER5A DNA MER1_type 1 189 0 7858 176 20 24 chr4 168173520 168173671 -34154676 - L1MA9 LINE L1 -9 6303 6153 221 95 0 24 chr4 168173671 168173713 -34154634 + (TTA)n Simple_repeat Simple_repeat 2 42 0 7858 176 20 24 chr4 168173713 168174034 -34154313 - L1MA9 LINE L1 -159 6153 5832 1695 127 3 65 chr4 168174034 168174325 -34154022 - AluSx SINE Alu -2 310 38 7858 176 20 24 chr4 168174325 168174990 -34153357 - L1MA9 LINE L1 -480 5832 5166 1803 14 0 0 chr4 168174990 168175197 -34153150 - L1PA3 LINE L1 0 6155 5949 7858 176 20 24 chr4 168175197 168175885 -34152462 - L1MA9 LINE L1 -1146 5166 4477 2256 96 0 34 chr4 168175885 168176208 -34152139 - AluSx SINE Alu 0 312 1 7858 176 20 24 chr4 168176208 168176950 -34151397 - L1MA9 LINE L1 -1835 4477 3742 6388 131 15 19 chr4 168176953 168177193 -34151154 - L1MA3 LINE L1 0 6305 6066 2720 14 0 0 chr4 168177193 168177489 -34150858 - AluY SINE Alu -3 308 13 6388 131 15 19 chr4 168177489 168178458 -34149889 - L1MA3 LINE L1 -239 6066 5102 1639 167 18 3 chr4 168178438 168178768 -34149579 - L1MA9 LINE L1 -2392 3754 3420 * 1403 129 58 0 chr4 168178768 168178993 -34149354 + MSTC LTR MaLR 1 238 -190 2247 209 104 9 chr4 168179094 168179662 -34148685 - L1MA9 LINE L1 -3312 2834 2213 2565 237 45 24 chr4 168179718 168179832 -34148515 + MER45B DNA AcHobo 211 321 -1260 9627 78 16 2 chr4 168179832 168181890 -34146457 + L1PA7 LINE L1 4084 6154 0 2565 237 45 24 chr4 168181890 168182471 -34145876 + MER45B DNA AcHobo 321 920 -120 1467 77 0 5 chr4 168182472 168182704 -34145643 + L1PA8 LINE L1 5953 6183 0 718 198 0 54 chr4 168182726 168182893 -34145454 + MER45B DNA AcHobo 883 1040 0 15403 118 13 38 chr4 168183122 168183227 -34145120 - Tigger1 DNA MER2_type -1 2417 2311 2046 173 81 5 chr4 168183227 168183621 -34144726 - MSTB LTR MaLR 0 426 3 15403 118 13 38 chr4 168183621 168185767 -34142580 - Tigger1 DNA MER2_type -107 2311 230 1871 112 31 0 chr4 168185767 168186027 -34142320 + AluSx SINE Alu 1 268 -44 15403 118 13 38 chr4 168186027 168186252 -34142095 - Tigger1 DNA MER2_type -2188 230 1 5209 163 37 16 chr4 168186491 168187584 -34140763 - L1MCc LINE L1 -766 6175 5061 35012 34 2 1 chr4 168187594 168192636 -34135711 - L1PA3 LINE L1 0 6155 1109 1488 167 8 4 chr4 168192636 168192894 -34135453 - L1MCc LINE L1 -1867 5074 4816 1871 165 51 2 chr4 168193239 168193855 -34134492 - L1M2 LINE L1 -660 5631 4992 * 2307 250 69 30 chr4 168193845 168194877 -34133470 - L1MCc LINE L1 -2965 3976 2905 1285 264 68 33 chr4 168194968 168195596 -34132751 - L1MCc LINE L1 -4226 2716 2111 732 186 108 41 chr4 168195596 168195790 -34132557 + MER3 DNA MER1_type 3 209 0 1285 264 68 33 chr4 168195790 168196179 -34132168 - L1MCc LINE L1 -4831 2111 1183 1472 279 10 10 chr4 168196181 168196597 -34131750 - L1MCc LINE L1 -5988 435 20 259 233 44 11 chr4 168196903 168196993 -34131354 + L1MD1 LINE L1 2369 2461 -3923 886 289 17 8 chr4 168197271 168197506 -34130841 + MIR SINE MIR 2 238 -24 1439 241 29 24 chr4 168197561 168197942 -34130405 + MLT1E2 LTR MaLR 5 387 -239 248 179 0 0 chr4 168197947 168198003 -34130344 + L1MD1 LINE L1 4119 4174 -2208 5029 156 48 7 chr4 168198007 168198927 -34129420 + L1MD1 LINE L1 5463 6407 -71 736 197 0 0 chr4 168198989 168199116 -34129231 + FLAM_C SINE Alu 1 127 -6 475 326 73 47 chr4 168199191 168199535 -34128812 + L1ME2 LINE L1 3839 4191 -1955 21 0 0 0 chr4 168199774 168199795 -34128552 + AT_rich Low_complexity Low_complexity 1 21 0 2202 94 7 0 chr4 168199799 168200075 -34128272 + AluSx SINE Alu 11 288 -24 189 0 0 0 chr4 168200075 168200096 -34128251 + (TA)n Simple_repeat Simple_repeat 2 22 0 26 0 0 0 chr4 168200203 168200229 -34128118 + AT_rich Low_complexity Low_complexity 1 26 0 474 296 14 52 chr4 168200459 168200750 -34127597 + L1ME2 LINE L1 5331 5610 -552 239 154 0 19 chr4 168200870 168200922 -34127425 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 534 227 154 2 chr4 168201345 168201549 -34126798 + L1ME2 LINE L1 5643 5868 -298 1013 190 87 47 chr4 168201603 168201905 -34126442 - MER45B DNA AcHobo 0 1040 726 1963 204 20 0 chr4 168201905 168202263 -34126084 - MLT1A1 LTR MaLR 0 365 1 * 2757 222 82 14 chr4 168202263 168202898 -34125449 - MER45B DNA AcHobo -311 729 51 312 213 88 0 chr4 168202922 168203002 -34125345 + L1ME2 LINE L1 6069 6155 -9 11388 189 90 8 chr4 168204465 168208280 -34120067 + L1PBa LINE L1 6 4318 -2544 1990 129 49 0 chr4 168208280 168208567 -34119780 + AluSq SINE Alu 1 301 -12 11388 189 90 8 chr4 168208567 168209675 -34118672 + L1PBa LINE L1 4318 5334 -1528 4181 219 43 17 chr4 168309739 168310907 -34017440 + L1M4 LINE L1 3519 4716 -1430 223 311 8 76 chr4 168311036 168311168 -34017179 - MIR SINE MIR -67 141 19 2035 93 45 0 chr4 168311207 168311475 -34016872 - AluSx SINE Alu -16 296 17 189 297 230 7 chr4 168313043 168313191 -34015156 + MIR SINE MIR 12 192 -70 261 57 0 0 chr4 168313575 168313610 -34014737 + (CA)n Simple_repeat Simple_repeat 2 36 0 1865 159 0 10 chr4 168314810 168315105 -34013242 + AluJo SINE Alu 1 292 -20 232 267 152 38 chr4 168315523 168315628 -34012719 + L2 LINE L2 3193 3309 -4 295 399 7 7 chr4 168316086 168316239 -34012108 + L2 LINE L2 2695 2847 -467 949 162 37 21 chr4 168316347 168316538 -34011809 - MLT1C LTR MaLR -270 197 4 194 333 53 0 chr4 168317253 168317310 -34011037 - MIR SINE MIR -167 95 36 1680 153 8 8 chr4 168317409 168317671 -34010676 + AluJb SINE Alu 34 295 -17 1728 166 29 19 chr4 168317737 168318044 -34010303 - AluJb SINE Alu -2 310 1 195 69 0 0 chr4 168318044 168318073 -34010274 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1304 218 3 32 chr4 168318080 168318365 -34009982 - AluJo SINE Alu -31 281 5 36 0 0 0 chr4 168318450 168318486 -34009861 + AT_rich Low_complexity Low_complexity 1 36 0 1674 117 0 40 chr4 168318833 168319102 -34009245 - AluSx SINE Alu 0 302 44 517 259 66 81 chr4 168319167 168319364 -34008983 - MLT1K LTR MaLR -90 498 305 226 275 183 17 chr4 168319753 168319873 -34008474 - MIR SINE MIR -12 250 111 232 367 73 25 chr4 168320014 168320289 -34008058 + L2 LINE L2 2471 2758 -556 477 297 108 42 chr4 168320439 168320725 -34007622 + L2 LINE L2 3004 3308 -5 328 177 152 13 chr4 168322032 168322111 -34006236 + MER103 DNA DNA 31 120 -46 231 36 0 0 chr4 168322178 168322206 -34006141 + (TGG)n Simple_repeat Simple_repeat 2 29 0 2035 100 7 11 chr4 168323903 168324204 -34004143 + AluSc SINE Alu 1 300 0 210 118 0 0 chr4 168324695 168324729 -34003618 + (CAG)n Simple_repeat Simple_repeat 2 35 0 236 53 26 0 chr4 168325268 168325306 -34003041 + (TG)n Simple_repeat Simple_repeat 2 40 0 2907 13 0 0 chr4 168325813 168326129 -34002218 - AluYb8 SINE Alu -2 316 1 263 237 0 0 chr4 168326174 168326233 -34002114 + (TG)n Simple_repeat Simple_repeat 1 59 0 259 222 0 111 chr4 168326385 168326484 -34001863 + L2 LINE L2 3185 3272 0 223 310 23 11 chr4 168326486 168326573 -34001774 - L2 LINE L2 -1026 2288 2201 221 275 126 60 chr4 168326571 168326905 -34001442 - L2 LINE L2 -1229 2085 1730 * 21 57 0 0 chr4 168328513 168328548 -33999799 + AT_rich Low_complexity Low_complexity 1 35 0 279 0 0 0 chr4 168329856 168329887 -33998460 + (TC)n Simple_repeat Simple_repeat 2 32 0 2052 113 22 50 chr4 168332070 168332389 -33995958 + AluSx SINE Alu 1 310 -2 1786 176 31 0 chr4 168333780 168334070 -33994277 - AluJb SINE Alu -13 299 1 1070 118 113 0 chr4 168334120 168334306 -33994041 - L1MC2 LINE L1 0 6344 6138 2839 146 143 113 chr4 168334311 168334718 -33993629 - L1MC3 LINE L1 -196 7589 7196 227 245 0 0 chr4 168334718 168334771 -33993576 - MLT1F1 LTR MaLR -480 87 35 2839 146 143 113 chr4 168334771 168334901 -33993446 - L1MC3 LINE L1 -589 7196 7071 1495 170 19 39 chr4 168334901 168335213 -33993134 - AluJo SINE Alu -2 310 5 2839 146 143 113 chr4 168335213 168335421 -33992926 - L1MC3 LINE L1 -714 7071 6767 197 292 83 52 chr4 168335602 168335794 -33992553 - L2 LINE L2 -753 2561 2364 2358 114 0 0 chr4 168335935 168336242 -33992105 - AluSx SINE Alu -5 307 1 2135 162 43 34 chr4 168336567 168336981 -33991366 - LTR52 LTR ERVL -3 418 1 2333 167 46 3 chr4 168337113 168337588 -33990759 + REP3 LTR ERV 4 550 -12 233 246 79 16 chr4 168337795 168337921 -33990426 + L1M4 LINE L1 4390 4523 -1623 311 96 0 39 chr4 168338192 168338244 -33990103 + L1PB4 LINE L1 6098 6147 -9 29 28 0 0 chr4 168338250 168338286 -33990061 + AT_rich Low_complexity Low_complexity 1 36 0 415 258 16 48 chr4 168339127 168339251 -33989096 - L2 LINE L2 -259 3054 2935 556 237 22 36 chr4 168339685 168339824 -33988523 + L2 LINE L2 3171 3307 -6 419 288 171 6 chr4 168340089 168340259 -33988088 + L2 LINE L2 3116 3313 0 528 181 7 139 chr4 168340957 168341101 -33987246 - FLAM_A SINE Alu -10 132 8 184 326 0 0 chr4 168341118 168341164 -33987183 + MER5A DNA MER1_type 136 181 -8 226 321 37 12 chr4 168341643 168341724 -33986623 - MIR SINE MIR -21 241 159 410 168 110 48 chr4 168341940 168342075 -33986272 - MIR SINE MIR -62 146 29 813 102 8 16 chr4 168342145 168342272 -33986075 - MER39 LTR ERV1 0 707 582 13203 119 108 5 chr4 168342275 168344389 -33983958 + L1M1 LINE L1 16 2347 -5218 3158 172 39 20 chr4 168344389 168344976 -33983371 - MER39 LTR ERV1 -109 598 1 249 349 0 0 chr4 168345366 168345449 -33982898 - L2 LINE L2 -3 3269 3187 300 164 0 0 chr4 168346624 168346679 -33981668 - L1MB2 LINE L1 -1 6170 6116 289 101 62 186 chr4 168346680 168346809 -33981538 + MADE1 DNA Mariner 1 52 -28 394 330 87 5 chr4 168347997 168348182 -33980165 + MIR SINE MIR 15 214 -48 5387 186 80 37 chr4 168348468 168348923 -33979424 - MER45R DNA AcHobo 0 1581 1147 2446 61 0 0 chr4 168348923 168349216 -33979131 - L1PA5 LINE L1 0 6154 5862 5387 186 80 37 chr4 168349216 168350048 -33978299 - MER45R DNA AcHobo -434 1147 239 3392 169 60 25 chr4 168350086 168350739 -33977608 - MER39 LTR ERV1 -28 679 4 846 200 24 6 chr4 168350763 168350928 -33977419 - MER45 DNA AcHobo -1412 169 2 2354 80 0 3 chr4 168351005 168351294 -33977053 - AluSc SINE Alu -21 288 1 313 111 93 0 chr4 168351499 168351553 -33976794 - LTR54 LTR ERV1 -48 462 404 241 210 49 62 chr4 168351755 168351836 -33976511 + MER116 DNA Mariner 1 80 0 313 333 18 9 chr4 168352210 168352324 -33976023 + MIR SINE MIR 24 138 -70 457 132 15 0 chr4 168353207 168353275 -33975072 + AluJ/FLAM SINE Alu 1 69 -243 27 49 0 0 chr4 168354322 168354363 -33973984 + AT_rich Low_complexity Low_complexity 1 41 0 997 170 16 16 chr4 168354372 168354566 -33973781 - AluJb SINE Alu 0 312 119 486 313 125 14 chr4 168354913 168355265 -33973082 + L1ME4a LINE L1 5448 5838 -283 444 258 23 23 chr4 168355619 168355751 -33972596 + MER94 DNA DNA 3 134 0 549 288 202 27 chr4 168355971 168356308 -33972039 - L2 LINE L2 -2 3311 2916 1819 140 0 21 chr4 168356478 168356764 -33971583 + AluJb SINE Alu 1 280 -32 23 0 0 0 chr4 168356769 168356792 -33971555 + AT_rich Low_complexity Low_complexity 1 23 0 266 218 128 0 chr4 168358762 168358840 -33969507 - MIR SINE MIR -65 197 110 243 208 21 0 chr4 168358885 168358933 -33969414 - MER94 DNA DNA -9 125 77 2341 87 3 0 chr4 168359473 168359771 -33968576 - AluSc SINE Alu -10 299 1 774 186 12 37 chr4 168359867 168360028 -33968319 - MER58A DNA MER1_type 0 157 1 625 209 0 126 chr4 168360860 168361051 -33967296 - MER20 DNA MER1_type 0 219 53 1236 128 50 18 chr4 168361319 168361537 -33966810 + L1MA5 LINE L1 6001 6225 -75 433 208 223 30 chr4 168362407 168362604 -33965743 - MER112 DNA MER1_type -25 235 1 363 272 83 48 chr4 168362754 168362846 -33965501 + L1M4 LINE L1 2770 2857 -3289 1576 180 40 23 chr4 168362846 168363146 -33965201 - AluJb SINE Alu -7 305 1 363 272 83 48 chr4 168363146 168363281 -33965066 + L1M4 LINE L1 2857 3005 -3141 236 280 20 46 chr4 168363468 168363787 -33964560 + CT-rich Low_complexity Low_complexity 1 310 0 665 111 20 0 chr4 168363982 168364081 -33964266 - L1MB2 LINE L1 -2 6169 6069 24 67 0 0 chr4 168364272 168364317 -33964030 + AT_rich Low_complexity Low_complexity 1 45 0 2495 74 3 0 chr4 168365036 168365345 -33963002 - AluSx SINE Alu -2 310 1 2074 119 0 3 chr4 168365411 168365704 -33962643 - AluSq SINE Alu -21 292 1 2005 152 3 0 chr4 168366017 168366319 -33962028 - AluSx SINE Alu -9 303 1 572 260 48 45 chr4 168369335 168369773 -33958574 - LTR33 LTR ERVL 0 521 25 23 0 0 0 chr4 168371562 168371585 -33956762 + AT_rich Low_complexity Low_complexity 1 23 0 889 160 0 0 chr4 168371841 168371966 -33956381 + FLAM_C SINE Alu 2 126 -7 610 228 47 0 chr4 168372203 168372330 -33956017 - FLAM_A SINE Alu 0 133 1 692 258 111 9 chr4 168373004 168373221 -33955126 + MIR SINE MIR 13 251 -11 1313 185 106 38 chr4 168373222 168373487 -33954860 + AluJo SINE Alu 1 283 -19 21 0 0 0 chr4 168373488 168373509 -33954838 + AT_rich Low_complexity Low_complexity 1 21 0 2013 116 12 35 chr4 168373629 168373948 -33954399 + AluSx SINE Alu 1 312 0 468 0 0 0 chr4 168374348 168374400 -33953947 + (TA)n Simple_repeat Simple_repeat 2 53 0 272 260 0 27 chr4 168374905 168374978 -33953369 - MER112 DNA MER1_type -173 87 17 196 331 164 20 chr4 168375074 168375379 -33952968 + L2 LINE L2 2624 2972 -342 342 250 98 53 chr4 168375460 168375592 -33952755 + L2 LINE L2 3125 3262 -10 855 160 0 7 chr4 168376654 168376798 -33951549 + FRAM SINE Alu 4 146 -30 1387 265 121 72 chr4 168376892 168378043 -33950304 + L1MEd LINE L1 47 1253 -4866 7836 42 3 0 chr4 168378454 168379462 -33948885 + L1PA5 LINE L1 5139 6154 0 473 174 6 34 chr4 168380024 168380202 -33948145 + CT-rich Low_complexity Low_complexity 3 175 0 224 128 0 21 chr4 168380211 168380258 -33948089 + (TCTCCC)n Simple_repeat Simple_repeat 3 48 0 10050 41 5 143 chr4 168380267 168381874 -33946473 + SVA Other Other 2 1386 0 27 0 0 0 chr4 168381929 168381956 -33946391 + AT_rich Low_complexity Low_complexity 1 27 0 2583 53 0 0 chr4 168382096 168382400 -33945947 - AluY SINE Alu -7 304 1 1777 134 65 57 chr4 168383491 168383716 -33944631 - THE1C LTR MaLR 0 375 144 2056 121 0 48 chr4 168383716 168384029 -33944318 + AluSx SINE Alu 1 298 -14 1777 134 65 57 chr4 168384029 168384175 -33944172 - THE1C LTR MaLR -231 144 1 517 233 182 0 chr4 168384538 168384697 -33943650 - MIR SINE MIR -52 210 23 2367 92 3 3 chr4 168386312 168386618 -33941729 + AluSx SINE Alu 1 306 -6 186 330 193 0 chr4 168387276 168387364 -33940983 - L2 LINE L2 -5 3267 3163 1433 186 47 0 chr4 168387487 168387761 -33940586 + AluSx SINE Alu 21 307 -5 1697 162 27 27 chr4 168387768 168388065 -33940282 + AluJo SINE Alu 1 297 -15 1351 144 90 8 chr4 168391000 168391256 -33937091 - AluJb SINE Alu -9 303 27 380 329 85 0 chr4 168391871 168392036 -33936311 + MIR SINE MIR 3 184 -62 609 260 142 5 chr4 168392122 168392326 -33936021 + MIR SINE MIR 31 262 0 1934 167 3 7 chr4 168393024 168393330 -33935017 - AluJb SINE Alu -7 305 1 31748 91 13 55 chr4 168395701 168399985 -33928362 - L1PA7 LINE L1 0 6469 2245 1191 95 0 6 chr4 168399985 168400143 -33928204 - AluSg/x SINE Alu -8 301 145 31748 91 13 55 chr4 168400143 168402290 -33926057 - L1PA7 LINE L1 -4224 2245 8 1994 225 67 82 chr4 168407018 168407554 -33920793 + MER20B DNA MER1_type 36 560 -223 2237 107 0 3 chr4 168407554 168407844 -33920503 - AluSq SINE Alu -24 289 1 1994 225 67 82 chr4 168407844 168408035 -33920312 + MER20B DNA MER1_type 560 752 -31 263 195 91 39 chr4 168408352 168408429 -33919918 - MIR SINE MIR -33 229 149 1713 159 7 39 chr4 168408431 168408617 -33919730 - AluJo SINE Alu -13 299 125 2296 97 7 0 chr4 168408617 168408915 -33919432 + AluY SINE Alu 1 300 -11 1713 159 7 39 chr4 168408915 168409037 -33919310 - AluJo SINE Alu -187 125 1 2310 156 4 94 chr4 168409037 168409126 -33919221 + MLT2D LTR ERVL 1 96 -318 2312 89 7 3 chr4 168409126 168409429 -33918918 - AluSp SINE Alu -9 304 1 2310 156 4 94 chr4 168409429 168409794 -33918553 + MLT2D LTR ERVL 96 414 0 1014 105 0 40 chr4 168410052 168410252 -33918095 + AluSg/x SINE Alu 135 328 0 195 317 172 27 chr4 168410291 168410477 -33917870 + L2 LINE L2 2827 3039 -233 531 238 159 26 chr4 168410492 168410643 -33917704 + MER5A DNA MER1_type 19 189 0 2110 205 47 32 chr4 168411727 168412061 -33916286 + L1MC4 LINE L1 7359 7705 -337 1651 159 14 11 chr4 168412061 168412370 -33915977 - AluJo SINE Alu 0 318 9 2110 205 47 32 chr4 168412370 168412527 -33915820 + L1MC4 LINE L1 7705 7858 -184 1111 149 0 6 chr4 168412560 168412728 -33915619 + FAM SINE Alu 1 48 -1 354 241 145 18 chr4 168412733 168412899 -33915448 + L1MC4 LINE L1 7856 8042 0 239 300 36 57 chr4 168413512 168413652 -33914695 - MIR SINE MIR -74 188 52 603 280 174 21 chr4 168414982 168415264 -33913083 - L2 LINE L2 -1 3312 2988 411 56 0 0 chr4 168415464 168415518 -33912829 + (TATG)n Simple_repeat Simple_repeat 3 56 0 2005 135 0 0 chr4 168415518 168415800 -33912547 - AluSx SINE Alu -30 282 1 294 222 0 0 chr4 168416003 168416048 -33912299 - AluJ/monomer SINE Alu -254 45 1 277 189 40 0 chr4 168416066 168416140 -33912207 + GA-rich Low_complexity Low_complexity 2 78 0 2302 77 0 3 chr4 168416599 168416886 -33911461 + AluSc SINE Alu 1 286 -23 1094 109 0 7 chr4 168416896 168417043 -33911304 + AluSg/x SINE Alu 124 269 -43 2238 104 24 0 chr4 168417350 168417648 -33910699 - AluSx SINE Alu -7 305 1 211 340 57 9 chr4 168417722 168417828 -33910519 + L2 LINE L2 3202 3312 -1 240 208 0 0 chr4 168418634 168418682 -33909665 - L1MC4 LINE L1 -6 8036 7989 1939 212 141 25 chr4 168418740 168419307 -33909040 - L1MC4 LINE L1 -166 7876 7244 1306 186 26 11 chr4 168419312 168419576 -33908771 - L1MC4 LINE L1 -956 7086 6819 375 104 52 52 chr4 168419577 168419653 -33908694 + MSTA LTR MaLR 58 133 -295 4552 53 17 45 chr4 168419653 168420728 -33907619 + MER11A LTR ERVK 1 1266 0 1417 125 94 81 chr4 168420728 168420787 -33907560 + MSTA LTR MaLR 128 185 -243 2108 135 0 19 chr4 168420787 168421105 -33907242 + AluSx SINE Alu 1 312 0 1417 125 94 81 chr4 168421105 168421342 -33907005 + MSTA LTR MaLR 185 428 0 448 250 0 10 chr4 168421342 168421438 -33906909 - L1MC4a LINE L1 -1071 6737 6643 371 175 0 82 chr4 168421441 168421515 -33906832 - L1MC4 LINE L1 -1456 6539 6479 2498 73 0 3 chr4 168421515 168421818 -33906529 - AluY SINE Alu -9 302 1 371 175 0 82 chr4 168421818 168421856 -33906491 - L1MC4 LINE L1 -1516 6479 6439 1911 166 73 13 chr4 168422221 168422619 -33905728 - L1MB7 LINE L1 -19 6663 6242 * 8592 205 60 28 chr4 168422611 168423502 -33904845 - L1MB7 LINE L1 -1210 5434 4573 1788 169 60 44 chr4 168423502 168423886 -33904461 + MLT1B LTR MaLR 1 390 0 8592 205 60 28 chr4 168423886 168424004 -33904343 - L1MB7 LINE L1 -2071 4573 4460 2141 133 0 7 chr4 168424004 168424312 -33904035 - AluSq SINE Alu -7 306 1 656 256 0 0 chr4 168424314 168424439 -33903908 - FLAM_A SINE Alu -8 125 1 8592 205 60 28 chr4 168424439 168425077 -33903270 - L1MB7 LINE L1 -2184 4460 3844 2144 123 42 33 chr4 168425077 168425411 -33902936 - MER1B DNA MER1_type 0 337 1 1718 181 129 6 chr4 168425411 168425734 -33902613 - MLT1A1 LTR MaLR 0 365 1 8592 205 60 28 chr4 168425734 168426389 -33901958 - L1MB7 LINE L1 -2799 3845 3052 1112 209 31 12 chr4 168426397 168426651 -33901696 + L1PA16 LINE L1 5906 6164 -2 929 202 47 142 chr4 168426651 168427081 -33901266 - L1MB7 LINE L1 -3584 3060 2672 373 176 5 48 chr4 168427084 168427222 -33901125 - AluJo SINE Alu -7 295 241 4896 103 166 142 chr4 168427222 168428701 -33899646 + pTR5 LTR ERV1 815 2438 0 1193 205 17 29 chr4 168428708 168428947 -33899400 - AluJo SINE Alu -75 237 2 3105 206 95 120 chr4 168428948 168429862 -33898485 - L1MB7 LINE L1 -3958 2688 1753 1587 167 19 4 chr4 168429862 168430125 -33898222 - AluJb SINE Alu -32 280 14 3105 206 95 120 chr4 168430125 168430138 -33898209 - L1MB7 LINE L1 -4893 1753 1741 1423 184 40 50 chr4 168430138 168430437 -33897910 - AluJo SINE Alu -16 296 1 3105 206 95 120 chr4 168430437 168430889 -33897458 - L1MB7 LINE L1 -4905 1741 1279 1924 138 3 27 chr4 168430889 168431187 -33897160 - AluSx SINE Alu -21 291 1 3105 206 95 120 chr4 168431187 168431214 -33897133 - L1MB7 LINE L1 -5367 1279 1253 1752 173 18 0 chr4 168431214 168431492 -33896855 - AluSx SINE Alu -28 284 2 3105 206 95 120 chr4 168431492 168431637 -33896710 - L1MB7 LINE L1 -5393 1253 1172 668 129 0 0 chr4 168431638 168431731 -33896616 + AluJ/FLAM SINE Alu 1 93 -219 1532 150 0 20 chr4 168431863 168432102 -33896245 + AluSx SINE Alu 50 285 -27 207 0 0 0 chr4 168432102 168432125 -33896222 + (CATA)n Simple_repeat Simple_repeat 4 26 0 1532 150 0 20 chr4 168432125 168432138 -33896209 + AluSx SINE Alu 285 297 -15 506 192 42 17 chr4 168432138 168432258 -33896089 - L1MB7 LINE L1 -5364 1178 1056 1267 206 6 155 chr4 168432291 168432655 -33895692 - L1MB7 LINE L1 -6127 415 135 1953 102 35 0 chr4 168432655 168432909 -33895438 - AluSx SINE Alu -33 279 17 1267 206 6 155 chr4 168432909 168433014 -33895333 - L1MB7 LINE L1 -6407 135 16 255 386 74 30 chr4 168433074 168433577 -33894770 + L2 LINE L2 1784 2308 -1006 265 294 261 22 chr4 168433602 168433782 -33894565 - MIR SINE MIR -16 246 24 * 366 257 71 57 chr4 168433781 168433809 -33894538 + MIR SINE MIR 121 147 -115 2002 120 3 7 chr4 168433809 168434114 -33894233 + AluSx SINE Alu 1 304 0 366 257 71 57 chr4 168434114 168434224 -33894123 + MIR SINE MIR 147 262 0 258 374 59 61 chr4 168434289 168435181 -33893166 + L2 LINE L2 2370 3260 -12 354 207 35 17 chr4 168438919 168439035 -33889312 - L1MC5 LINE L1 -51 7910 7793 280 221 199 39 chr4 168439050 168439281 -33889066 - L1MC5 LINE L1 -221 7740 7473 861 169 38 12 chr4 168439329 168439489 -33888858 + FRAM SINE Alu 1 164 -12 561 257 20 0 chr4 168439495 168439647 -33888700 - L1MC5 LINE L1 -518 7443 7289 2377 140 19 3 chr4 168439648 168440027 -33888320 - MLT1B LTR MaLR 0 390 6 1483 211 49 118 chr4 168440040 168440798 -33887549 - L1MC5 LINE L1 -678 7283 6625 1487 183 0 8 chr4 168441046 168441303 -33887044 + AluJo SINE Alu 40 294 -18 22 0 0 0 chr4 168441402 168441424 -33886923 + AT_rich Low_complexity Low_complexity 1 22 0 2203 116 0 25 chr4 168442119 168442439 -33885908 + AluSx SINE Alu 1 312 0 188 276 29 57 chr4 168442480 168442585 -33885762 + L2 LINE L2 3134 3235 -78 233 296 35 28 chr4 168442814 168442956 -33885391 - L1P LINE L1 -1098 5048 4906 302 141 47 0 chr4 168443142 168443206 -33885141 + L1MB4 LINE L1 6108 6174 -6 2352 90 7 0 chr4 168443486 168443786 -33884561 - AluSc SINE Alu -7 302 1 319 326 191 14 chr4 168444040 168444552 -33883795 + L2 LINE L2 2063 2665 -649 1820 147 82 23 chr4 168445982 168446336 -33882011 + THE1C LTR MaLR 1 375 0 601 203 84 0 chr4 168446418 168446561 -33881786 + L2 LINE L2 3155 3309 -4 289 256 78 16 chr4 168447325 168447454 -33880893 + HAL1 LINE L1 1126 1262 -1245 250 275 83 9 chr4 168447565 168447674 -33880673 - HAL1 LINE L1 -19 2488 2372 1519 273 134 10 chr4 168447724 168448220 -33880127 - HAL1 LINE L1 -607 1900 1292 1604 157 35 48 chr4 168448220 168448532 -33879815 - AluJb SINE Alu 0 312 5 1519 273 134 10 chr4 168448532 168448731 -33879616 - HAL1 LINE L1 -1215 1292 1119 511 242 17 8 chr4 168448862 168448982 -33879365 - MER94 DNA DNA -13 121 1 769 270 85 0 chr4 168448982 168449193 -33879154 - MIR SINE MIR -14 248 20 253 241 0 19 chr4 168449343 168449397 -33878950 - MIR3 SINE MIR -152 56 4 182 341 68 11 chr4 168450093 168450181 -33878166 - L2 LINE L2 -8 3264 3172 2125 116 11 0 chr4 168450246 168450530 -33877817 + AluSx SINE Alu 1 287 -25 2044 145 26 0 chr4 168450837 168451147 -33877200 - MER7A DNA MER2_type -1 345 30 2012 114 130 3 chr4 168451874 168452189 -33876158 + THE1A LTR MaLR 1 355 0 12032 98 15 7 chr4 168452189 168453757 -33874590 + THE1A-int LTR MaLR 1 1580 0 2511 109 8 14 chr4 168453757 168454114 -33874233 + THE1A LTR MaLR 1 355 0 22 80 0 0 chr4 168454729 168454779 -33873568 + AT_rich Low_complexity Low_complexity 1 50 0 2074 141 0 3 chr4 168455034 168455338 -33873009 - AluSx SINE Alu -9 303 1 327 188 43 0 chr4 168455430 168455499 -33872848 - HsTC2 DNA Tc2 -1826 72 1 224 253 89 51 chr4 168455850 168455916 -33872431 + MER5B DNA MER1_type 2 73 -105 2153 123 3 0 chr4 168455916 168456216 -33872131 + AluSg SINE Alu 1 301 -9 224 253 89 51 chr4 168456216 168456228 -33872119 + MER5B DNA MER1_type 73 83 -95 224 301 75 0 chr4 168456255 168456348 -33871999 + MIR SINE MIR 79 178 -84 1250 126 0 0 chr4 168456553 168456728 -33871619 - AluSg/x SINE Alu -1 311 137 429 281 136 42 chr4 168456728 168457065 -33871282 + L2 LINE L2 2627 3006 -266 2044 127 14 0 chr4 168457065 168457357 -33870990 - AluSx SINE Alu -16 296 1 429 281 136 42 chr4 168457357 168457438 -33870909 + L2 LINE L2 3006 3078 -194 1350 177 37 34 chr4 168457630 168457924 -33870423 - AluJb SINE Alu -13 299 5 834 149 7 28 chr4 168457925 168458066 -33870281 - AluJb SINE Alu -174 138 1 362 318 62 8 chr4 168458102 168458231 -33870116 + L2 LINE L2 3134 3269 -3 190 148 120 204 chr4 168462842 168462915 -33865432 - MIR SINE MIR -48 214 137 1636 175 56 0 chr4 168462915 168463219 -33865128 - AluJo SINE Alu 0 319 1 3120 191 27 47 chr4 168463220 168463512 -33864835 + MLT1E3 LTR MaLR 5 301 -323 2114 78 22 0 chr4 168463512 168463780 -33864567 + AluY SINE Alu 1 274 -37 360 0 0 0 chr4 168463784 168463824 -33864523 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 3120 191 27 47 chr4 168463824 168464159 -33864188 + MLT1E3 LTR MaLR 304 624 0 190 148 120 204 chr4 168464159 168464190 -33864157 - MIR SINE MIR -124 138 116 2081 167 50 8 chr4 168464299 168464659 -33863688 - THE1C LTR MaLR 0 375 1 227 30 0 30 chr4 168464760 168464793 -33863554 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1991 140 10 0 chr4 168467669 168467961 -33860386 - AluSx SINE Alu -17 295 1 521 226 0 0 chr4 168468228 168468330 -33860017 + MIR SINE MIR 40 141 -121 26 74 0 0 chr4 168468659 168468713 -33859634 + AT_rich Low_complexity Low_complexity 1 54 0 2037 128 13 10 chr4 168469891 168470195 -33858152 + AluJo SINE Alu 1 305 -7 392 231 22 148 chr4 168471306 168471535 -33856812 - MIR SINE MIR -21 241 42 301 320 140 0 chr4 168471532 168471682 -33856665 - MIR SINE MIR -90 172 2 * 2197 112 0 0 chr4 168471712 168472006 -33856341 + AluSx SINE Alu 1 294 -18 220 294 0 24 chr4 168473022 168473107 -33855240 - MIR SINE MIR -2 260 178 300 304 155 7 chr4 168473145 168473293 -33855054 - MIR SINE MIR -75 187 18 1906 167 13 0 chr4 168473340 168473640 -33854707 + AluJo SINE Alu 1 304 -8 20047 100 11 9 chr4 168473946 168476293 -33852054 - L1PA7 LINE L1 -4 6465 4125 2348 103 10 0 chr4 168476293 168476593 -33851754 - AluSc SINE Alu -6 303 1 20047 100 11 9 chr4 168476593 168477236 -33851111 - L1PA7 LINE L1 -2344 4125 3485 2501 65 7 0 chr4 168477236 168477545 -33850802 - AluY SINE Alu 0 311 1 20047 100 11 9 chr4 168477545 168478520 -33849827 - L1PA7 LINE L1 -2984 3485 2498 3516 92 38 11 chr4 168478523 168479055 -33849292 - L1PA7 LINE L1 -5514 947 402 13567 120 21 40 chr4 168479060 168482427 -33845920 + L1PA7 LINE L1 4 3375 -3086 33105 35 7 0 chr4 168482427 168487439 -33840908 + L1PA3 LINE L1 1120 6168 0 15910 95 20 14 chr4 168487439 168490515 -33837832 + L1PA7 LINE L1 3364 6462 -7 981 191 0 18 chr4 168490542 168490710 -33837637 - FAM SINE Alu -10 165 1 21 0 0 0 chr4 168491488 168491509 -33836838 + AT_rich Low_complexity Low_complexity 1 21 0 1589 180 46 3 chr4 168491536 168491819 -33836528 - AluJo SINE Alu -15 297 3 345 268 45 25 chr4 168491905 168492062 -33836285 - MER103 DNA DNA -3 163 4 1240 196 28 99 chr4 168492192 168492585 -33835762 - MLT1A1 LTR MaLR 0 365 1 1562 161 11 32 chr4 168492745 168493030 -33835317 + AluJo SINE Alu 34 312 0 572 255 28 21 chr4 168493207 168493352 -33834995 - L2 LINE L2 0 3313 3168 310 258 91 53 chr4 168493359 168493491 -33834856 + L2 LINE L2 2603 2739 -575 243 336 88 32 chr4 168493765 168493890 -33834457 + L2 LINE L2 3141 3272 0 707 195 8 16 chr4 168494720 168494848 -33833499 - FLAM_C SINE Alu -4 129 3 2479 91 0 0 chr4 168495210 168495519 -33832828 + AluSc SINE Alu 1 309 0 825 300 107 14 chr4 168496151 168496591 -33831756 - MLT1L LTR MaLR -22 593 113 2100 124 28 0 chr4 168496865 168497156 -33831191 - AluSq SINE Alu -14 299 1 1730 169 0 14 chr4 168497300 168497590 -33830757 - AluJo SINE Alu -26 286 1 1252 206 98 16 chr4 168497617 168497932 -33830415 - MER58B DNA MER1_type 0 341 1 1771 121 51 60 chr4 168498522 168498837 -33829510 + AluJb SINE Alu 1 312 0 262 347 8 58 chr4 168499536 168499657 -33828690 + MIR SINE MIR 16 130 -78 391 188 20 10 chr4 168499662 168499763 -33828584 - L1MA10 LINE L1 0 6334 6233 848 129 54 38 chr4 168499765 168499951 -33828396 - MER53 DNA DNA 0 189 1 2693 175 71 31 chr4 168500002 168500116 -33828231 - L1ME1 LINE L1 -180 5986 5878 2141 112 30 3 chr4 168500116 168500420 -33827927 - AluSx SINE Alu 0 312 1 2693 175 71 31 chr4 168500420 168500993 -33827354 - L1ME1 LINE L1 -288 5878 5271 5414 121 43 20 chr4 168500996 168502050 -33826297 - L1PA14 LINE L1 -9 6152 5089 461 94 16 0 chr4 168502068 168502132 -33826215 - FLAM SINE Alu -16 127 63 952 179 40 18 chr4 168502151 168502375 -33825972 - L1ME1 LINE L1 -1051 5095 4867 365 208 0 50 chr4 168502375 168502400 -33825947 - MER112 DNA MER1_type -164 96 71 267 31 0 0 chr4 168502400 168502432 -33825915 + (CA)n Simple_repeat Simple_repeat 1 32 0 365 208 0 50 chr4 168502432 168502507 -33825840 - MER112 DNA MER1_type -189 71 1 310 290 68 68 chr4 168502933 168503109 -33825238 + MIR SINE MIR 86 261 -1 1281 167 9 18 chr4 168503640 168503867 -33824480 - AluJb SINE Alu 0 312 88 2172 112 0 0 chr4 168503923 168504208 -33824139 - AluSx SINE Alu -11 301 17 758 158 0 0 chr4 168504435 168504568 -33823779 + AluSp/q SINE Alu 181 313 0 1180 190 71 26 chr4 168504640 168504867 -33823480 + MER33 DNA MER1_type 1 247 -2338 2042 141 3 0 chr4 168504867 168505157 -33823190 - AluSx SINE Alu -21 291 1 1180 190 71 26 chr4 168505157 168505239 -33823108 + MER33 DNA MER1_type 247 324 0 768 156 8 0 chr4 168507050 168507172 -33821175 + FLAM_A SINE Alu 2 124 -9 322 216 93 79 chr4 168507307 168507384 -33820963 + MIR SINE MIR 114 195 -67 2302 96 14 0 chr4 168507384 168507676 -33820671 + AluSx SINE Alu 1 296 -16 322 216 93 79 chr4 168507676 168507737 -33820610 + MIR SINE MIR 195 254 -8 669 263 47 0 chr4 168508092 168508263 -33820084 + MER63A DNA MER1_type 31 209 -1 885 223 27 0 chr4 168508326 168508510 -33819837 + MER5A DNA MER1_type 1 189 0 1662 177 3 69 chr4 168508782 168509116 -33819231 + AluJb SINE Alu 1 312 0 1374 320 156 14 chr4 168509353 168510199 -33818148 - L3 LINE CR1 -33 1544 579 2222 96 0 10 chr4 168510562 168510864 -33817483 + AluSp SINE Alu 1 299 -14 1994 136 20 14 chr4 168510874 168511168 -33817179 + AluSx SINE Alu 4 299 -13 24 53 0 0 chr4 168511194 168511232 -33817115 + AT_rich Low_complexity Low_complexity 1 38 0 598 154 10 19 chr4 168511242 168511346 -33817001 + FLAM_A SINE Alu 24 126 -16 1934 137 10 7 chr4 168511676 168511968 -33816379 - AluJb SINE Alu -19 293 1 3047 159 67 3 chr4 168512204 168512448 -33815899 + L1MB3 LINE L1 5515 5742 -441 1138 209 58 66 chr4 168512448 168512841 -33815506 - MLT1B LTR MaLR 0 390 1 3047 159 67 3 chr4 168512841 168513207 -33815140 + L1MB3 LINE L1 5742 6164 -19 2155 111 0 0 chr4 168513270 168513558 -33814789 + AluSg SINE Alu 1 288 -22 583 0 0 0 chr4 168513611 168513682 -33814665 - L1PA2 LINE L1 -3 6152 6082 1456 110 50 0 chr4 168513815 168514034 -33814313 + MER30 DNA MER1_type 1 230 0 259 86 0 0 chr4 168514792 168514827 -33813520 + U2 snRNA snRNA 1 35 -153 300 70 0 0 chr4 168516436 168516479 -33811868 + (CA)n Simple_repeat Simple_repeat 2 44 0 766 138 9 26 chr4 168516546 168516662 -33811685 - FRAM SINE Alu -20 156 43 1308 237 57 33 chr4 168517104 168517526 -33810821 - MLT2F LTR ERVL -231 432 1 2166 72 0 0 chr4 168517906 168518171 -33810176 + AluY SINE Alu 1 265 -46 389 237 13 0 chr4 168518735 168518811 -33809536 - MER81 DNA DNA -37 77 1 1303 115 11 0 chr4 168519050 168519232 -33809115 + AluSg/x SINE Alu 114 297 -15 2417 52 0 0 chr4 168519841 168520158 -33808189 - AluY SINE Alu 0 311 1 22 35 0 0 chr4 168521459 168521488 -33806859 + AT_rich Low_complexity Low_complexity 1 29 0 210 315 136 43 chr4 168521606 168521768 -33806579 + MER5A DNA MER1_type 3 179 -10 2232 90 0 0 chr4 168521847 168522183 -33806164 + AluSc SINE Alu 1 336 0 1492 176 119 0 chr4 168522199 168522594 -33805753 + MLT2B1 LTR ERVL 16 511 -9 710 203 117 6 chr4 168524028 168524191 -33804156 - MIR SINE MIR -24 238 58 454 185 202 28 chr4 168524203 168524287 -33804060 + MER5A DNA MER1_type 4 72 -117 1981 129 0 0 chr4 168524287 168524558 -33803789 - AluSx SINE Alu -37 275 5 454 185 202 28 chr4 168524558 168524627 -33803720 + MER5A DNA MER1_type 72 188 -1 24 32 0 0 chr4 168524811 168524842 -33803505 + AT_rich Low_complexity Low_complexity 1 31 0 217 316 114 0 chr4 168524979 168525058 -33803289 + L2 LINE L2 3202 3289 -24 26 0 0 0 chr4 168525819 168525845 -33802502 + AT_rich Low_complexity Low_complexity 1 26 0 222 160 0 0 chr4 168525951 168526001 -33802346 + (TA)n Simple_repeat Simple_repeat 1 50 0 337 226 10 26 chr4 168527208 168527312 -33801035 + MIR3 SINE MIR 73 177 -31 1774 179 3 3 chr4 168527432 168527728 -33800619 - AluJo SINE Alu -16 296 1 2173 113 3 0 chr4 168527914 168528207 -33800140 + AluSx SINE Alu 4 297 -15 428 240 82 56 chr4 168528364 168528560 -33799787 + L1ME3 LINE L1 5961 6161 -1 21 36 0 0 chr4 168529165 168529193 -33799154 + AT_rich Low_complexity Low_complexity 1 28 0 2099 131 3 3 chr4 168529228 168529525 -33798822 + AluJb SINE Alu 1 297 -15 1955 138 3 3 chr4 168529561 168529894 -33798453 - AluSx SINE Alu 0 333 1 760 291 87 28 chr4 168530385 168530927 -33797420 + L1MC5 LINE L1 7302 7875 -86 2134 107 10 3 chr4 168531037 168531328 -33797019 + AluSx SINE Alu 1 293 -19 391 206 10 31 chr4 168531673 168531770 -33796577 - MLT1K LTR MaLR -1 587 493 368 198 10 10 chr4 168531781 168531877 -33796470 + L1MC3 LINE L1 4978 5073 -1073 4398 201 36 6 chr4 168531899 168532778 -33795569 + L1MC3 LINE L1 5470 6375 -1410 1623 144 39 62 chr4 168532963 168533269 -33795078 + AluSx SINE Alu 14 312 0 2240 106 3 13 chr4 168533706 168534018 -33794329 + AluSx SINE Alu 1 309 -3 190 380 28 35 chr4 168534716 168534858 -33793489 + L2 LINE L2 2825 2965 -307 620 272 38 30 chr4 168535342 168535663 -33792684 + LTR16A LTR ERVL 1 374 -76 1754 164 32 11 chr4 168536594 168536875 -33791472 + AluJo SINE Alu 1 287 -25 387 0 0 0 chr4 168536883 168536926 -33791421 + (CA)n Simple_repeat Simple_repeat 2 44 0 1976 261 84 13 chr4 168536929 168537063 -33791284 - L1MC4a LINE L1 -1849 5959 5836 303 28 0 0 chr4 168537063 168537099 -33791248 + (TC)n Simple_repeat Simple_repeat 1 36 0 1976 261 84 13 chr4 168537099 168537584 -33790763 - L1MC4a LINE L1 -1972 5836 5296 248 290 33 114 chr4 168537778 168538023 -33790324 - L2 LINE L2 -218 3054 2830 1212 187 161 11 chr4 168538069 168538336 -33790011 - AluSx SINE Alu -5 307 1 246 314 81 12 chr4 168538338 168538510 -33789837 - L2 LINE L2 -567 2747 2564 201 147 0 0 chr4 168539240 168539274 -33789073 + (TATG)n Simple_repeat Simple_repeat 3 36 0 2303 92 0 0 chr4 168539274 168539568 -33788779 - AluY SINE Alu -17 294 1 1668 170 58 0 chr4 168539572 168539849 -33788498 - AluJo SINE Alu -19 293 1 356 269 143 0 chr4 168539971 168540090 -33788257 + MIR SINE MIR 121 256 -6 216 371 0 84 chr4 168540519 168540732 -33787615 - MIR3 SINE MIR -3 205 11 297 295 62 9 chr4 168540866 168540978 -33787369 - MIR SINE MIR -6 256 139 2036 149 0 3 chr4 168541752 168542061 -33786286 - AluSx SINE Alu -4 308 1 2495 65 0 3 chr4 168542434 168542740 -33785607 - AluY SINE Alu -2 309 5 1157 118 41 0 chr4 168543326 168543495 -33784852 + AluSg/x SINE Alu 136 311 -1 2215 128 3 0 chr4 168543907 168544211 -33784136 + AluSx SINE Alu 1 305 -7 1711 223 77 37 chr4 168544754 168545065 -33783282 - MLT1F1 LTR MaLR -1 566 223 1772 137 76 0 chr4 168545065 168545342 -33783005 + AluJb SINE Alu 1 298 -14 1711 223 77 37 chr4 168545342 168545540 -33782807 - MLT1F1 LTR MaLR -344 223 34 2111 142 0 0 chr4 168545659 168545970 -33782377 - AluSx SINE Alu -1 311 1 23 33 0 0 chr4 168546288 168546318 -33782029 + AT_rich Low_complexity Low_complexity 1 30 0 763 148 31 8 chr4 168547829 168547957 -33780390 - FLAM_A SINE Alu -2 140 10 23 0 0 0 chr4 168547966 168547989 -33780358 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 168548125 168548149 -33780198 + AT_rich Low_complexity Low_complexity 1 24 0 970 138 96 11 chr4 168548552 168548740 -33779607 - L1MA4 LINE L1 -6 6294 6091 21 0 0 0 chr4 168549300 168549321 -33779026 + AT_rich Low_complexity Low_complexity 1 21 0 1672 169 26 26 chr4 168549618 168549920 -33778427 + AluJo SINE Alu 1 302 -10 2241 97 0 10 chr4 168549924 168550224 -33778123 + AluSc SINE Alu 1 297 -12 344 301 169 27 chr4 168551253 168551436 -33776911 + Charlie8 DNA MER1_type 1 209 -2208 223 26 0 53 chr4 168551469 168551507 -33776840 + (CAA)n Simple_repeat Simple_repeat 2 37 0 2207 94 0 7 chr4 168551708 168552033 -33776314 - AluSq SINE Alu 0 323 1 2843 0 0 0 chr4 168552053 168552353 -33775994 - AluYa5 SINE Alu -11 300 1 277 189 40 0 chr4 168552812 168552886 -33775461 + CT-rich Low_complexity Low_complexity 2 78 0 805 176 32 0 chr4 168552904 168553029 -33775318 + FLAM_C SINE Alu 1 129 -4 1527 177 3 81 chr4 168553080 168553390 -33774957 - AluJo SINE Alu -14 288 3 1833 157 0 29 chr4 168554518 168554858 -33773489 + AluJb SINE Alu 1 312 0 22 0 0 0 chr4 168555504 168555526 -33772821 + AT_rich Low_complexity Low_complexity 1 22 0 306 226 220 9 chr4 168555969 168556137 -33772210 - MIR SINE MIR -43 219 13 257 260 94 0 chr4 168556591 168556687 -33771660 + L1ME LINE L1 5517 5621 -500 21 36 0 0 chr4 168556785 168556813 -33771534 + AT_rich Low_complexity Low_complexity 1 28 0 1747 154 20 3 chr4 168556965 168557257 -33771090 - AluJb SINE Alu -15 297 1 265 360 130 0 chr4 168557641 168557741 -33770606 + L3b LINE CR1 1469 1581 -2 1730 171 14 0 chr4 168558482 168558768 -33769579 - AluJo SINE Alu -20 292 3 1843 181 0 0 chr4 168559900 168560192 -33768155 + AluJb SINE Alu 1 292 -20 255 61 0 0 chr4 168560192 168560225 -33768122 + (TA)n Simple_repeat Simple_repeat 2 34 0 2198 108 0 16 chr4 168560623 168560928 -33767419 + AluSx SINE Alu 1 300 -12 1581 168 29 15 chr4 168561777 168561795 -33766552 - AluJb SINE Alu -21 291 275 243 0 0 0 chr4 168561795 168561822 -33766525 + (TC)n Simple_repeat Simple_repeat 2 28 0 1581 168 29 15 chr4 168561822 168562077 -33766270 - AluJb SINE Alu -37 275 14 1898 138 32 0 chr4 168562374 168562686 -33765661 + AluJb SINE Alu 1 312 0 1073 122 0 0 chr4 168563159 168563336 -33765011 + AluSg/x SINE Alu 134 310 0 35 0 0 0 chr4 168563361 168563396 -33764951 + AT_rich Low_complexity Low_complexity 1 35 0 721 90 110 0 chr4 168563396 168563496 -33764851 - HY1 scRNA scRNA -1 111 1 22 94 0 0 chr4 168563800 168563864 -33764483 + AT_rich Low_complexity Low_complexity 1 64 0 1360 160 0 0 chr4 168564533 168564739 -33763608 + AluJb SINE Alu 1 206 -106 419 227 146 18 chr4 168564951 168565061 -33763286 - MIR SINE MIR -111 151 28 643 318 107 23 chr4 168565249 168565595 -33762752 + L1MEd LINE L1 1 375 -5744 355 177 16 40 chr4 168565595 168565719 -33762628 + (TA)n Simple_repeat Simple_repeat 1 121 0 368 327 29 0 chr4 168565777 168565881 -33762466 + L1MEd LINE L1 413 519 -5600 740 258 39 0 chr4 168565881 168566059 -33762288 - MER58A DNA MER1_type 0 224 40 250 215 0 92 chr4 168566066 168566131 -33762216 + L1MEd LINE L1 512 570 -5549 591 287 59 95 chr4 168566148 168566376 -33761971 + L1MEd LINE L1 705 940 -5179 1734 91 151 0 chr4 168566376 168566628 -33761719 - AluSx SINE Alu -22 290 1 591 287 59 95 chr4 168566628 168566699 -33761648 + L1MEd LINE L1 940 1012 -5107 7822 35 1 1 chr4 168566699 168567804 -33760543 + L1PA4 LINE L1 5084 6188 0 591 287 59 95 chr4 168567804 168567923 -33760424 + L1MEd LINE L1 1012 1110 -5009 2299 109 0 0 chr4 168568118 168568420 -33759927 + AluSx SINE Alu 1 302 -10 1202 147 22 65 chr4 168568525 168568756 -33759591 - AluJb SINE Alu -8 304 84 1781 168 3 3 chr4 168571137 168571429 -33756918 + AluJb SINE Alu 12 303 -9 1657 171 3 24 chr4 168571544 168571831 -33756516 - AluJb SINE Alu -6 306 26 2126 138 0 0 chr4 168572236 168572547 -33755800 - AluJb SINE Alu -1 311 1 2124 125 0 10 chr4 168572813 168573117 -33755230 + AluSx SINE Alu 1 301 -11 763 283 57 34 chr4 168573892 168574312 -33754035 - LTR33 LTR ERVL 0 521 3 357 296 126 13 chr4 168575157 168575316 -33753031 - MIR SINE MIR -39 223 47 1027 204 0 0 chr4 168575751 168575927 -33752420 - FRAM SINE Alu 0 176 1 2123 119 10 0 chr4 168575937 168576230 -33752117 - AluSq SINE Alu -17 296 1 2275 89 3 20 chr4 168576238 168576540 -33751807 - AluSp SINE Alu -16 297 1 210 288 0 17 chr4 168577353 168577412 -33750935 + L2 LINE L2 3256 3313 0 2215 130 0 0 chr4 168577930 168578229 -33750118 + AluSx SINE Alu 1 299 -13 2148 160 14 22 chr4 168578262 168578630 -33749717 + MLT1A1 LTR MaLR 1 365 0 243 0 0 0 chr4 168579299 168579326 -33749021 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1418 174 19 26 chr4 168579332 168579596 -33748751 - AluJo SINE Alu -37 275 14 180 0 0 0 chr4 168579822 168579842 -33748505 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2107 81 0 0 chr4 168579849 168580107 -33748240 - AluY SINE Alu -51 260 3 2302 116 0 3 chr4 168580115 168580425 -33747922 - AluSx SINE Alu -3 309 1 279 258 56 81 chr4 168580430 168580495 -33747852 - L1ME LINE L1 -237 5884 5819 1675 161 16 29 chr4 168580495 168580811 -33747536 + AluJo SINE Alu 1 312 0 279 258 56 81 chr4 168580811 168580943 -33747404 - L1ME LINE L1 -302 5819 5692 1910 135 0 47 chr4 168581124 168581448 -33746899 + AluSx SINE Alu 1 310 0 438 20 0 0 chr4 168581539 168581590 -33746757 + (TG)n Simple_repeat Simple_repeat 2 52 0 670 158 100 33 chr4 168581897 168582017 -33746330 + FLAM_C SINE Alu 2 129 -14 2171 86 3 30 chr4 168582216 168582517 -33745830 + AluSp SINE Alu 1 293 -20 1890 138 3 30 chr4 168583055 168583360 -33744987 + AluSx SINE Alu 1 297 -15 1961 116 45 27 chr4 168584025 168584317 -33744030 - AluSx SINE Alu -15 297 1 252 292 42 25 chr4 168584413 168584533 -33743814 + L1MC4 LINE L1 7790 7911 -131 297 0 0 0 chr4 168584533 168584566 -33743781 + (CA)n Simple_repeat Simple_repeat 2 34 0 279 139 47 23 chr4 168584566 168584652 -33743695 + (CAGAGA)n Simple_repeat Simple_repeat 3 90 0 1709 166 3 39 chr4 168584785 168585093 -33743254 - AluJb SINE Alu -15 297 1 329 293 100 21 chr4 168585346 168585486 -33742861 - L2 LINE L2 -5 3267 3117 233 211 18 18 chr4 168585596 168585653 -33742694 + (TAA)n Simple_repeat Simple_repeat 3 59 0 686 213 16 0 chr4 168586076 168586203 -33742144 + FLAM_A SINE Alu 13 141 -1 255 285 54 46 chr4 168586388 168586518 -33741829 - L2 LINE L2 -497 2817 2687 989 144 0 0 chr4 168586740 168586879 -33741468 + AluJb SINE Alu 144 282 -30 230 51 51 0 chr4 168586882 168586921 -33741426 + A-rich Low_complexity Low_complexity 2 42 0 351 308 154 12 chr4 168587037 168587277 -33741070 - L2 LINE L2 -703 2611 2338 2200 230 37 6 chr4 168587277 168587534 -33740813 - L1M4 LINE L1 -1201 4945 4698 1036 123 68 0 chr4 168587534 168587696 -33740651 + L1PA16 LINE L1 5994 6166 0 2200 230 37 6 chr4 168587696 168587973 -33740374 - L1M4 LINE L1 -1448 4698 4394 421 268 65 14 chr4 168588302 168588440 -33739907 + MIR SINE MIR 113 257 -5 1783 153 3 33 chr4 168588654 168588961 -33739386 + AluJb SINE Alu 1 298 -14 1303 145 68 0 chr4 168589031 168589266 -33739081 - L1MA4 LINE L1 -11 6289 6039 780 187 12 76 chr4 168589305 168589476 -33738871 - AluSg/x SINE Alu -11 298 139 227 195 0 46 chr4 168589505 168589592 -33738755 + (TTAA)n Simple_repeat Simple_repeat 1 83 0 879 157 0 7 chr4 168589601 168589741 -33738606 - AluJb SINE Alu -173 139 1 268 108 0 38 chr4 168589741 168589799 -33738548 - L1MA4A LINE L1 -249 6054 5995 6641 100 12 3 chr4 168590494 168592043 -33736304 + L1PA10 LINE L1 4607 6168 0 21 36 0 0 chr4 168592360 168592388 -33735959 + AT_rich Low_complexity Low_complexity 1 28 0 442 115 16 0 chr4 168592666 168592727 -33735620 - AluS SINE Alu -247 63 2 216 235 0 0 chr4 168592738 168592789 -33735558 - MIR SINE MIR -108 154 104 2276 104 0 13 chr4 168592997 168593314 -33735033 - AluSq SINE Alu 0 313 1 1528 145 46 56 chr4 168593374 168593545 -33734802 - AluSx SINE Alu -12 300 132 2841 19 0 6 chr4 168593545 168593864 -33734483 - AluYb8 SINE Alu -1 317 1 1528 145 46 56 chr4 168593864 168593995 -33734352 - AluSx SINE Alu -180 132 1 308 287 28 28 chr4 168594005 168594113 -33734234 - MIR SINE MIR -108 154 47 2412 70 3 0 chr4 168594518 168594819 -33733528 + AluY SINE Alu 1 302 -9 2447 68 0 7 chr4 168595141 168595465 -33732882 + AluSc SINE Alu 1 309 0 28 0 0 0 chr4 168596494 168596522 -33731825 + AT_rich Low_complexity Low_complexity 1 28 0 387 293 0 20 chr4 168597185 168597284 -33731063 + L2 LINE L2 3166 3262 -10 330 298 21 96 chr4 168598211 168598295 -33730052 + MER115 DNA AcHobo 292 356 -337 2084 117 0 24 chr4 168598295 168598593 -33729754 - AluSg SINE Alu -13 297 7 330 298 21 96 chr4 168598593 168598696 -33729651 + MER115 DNA AcHobo 356 465 -228 226 326 22 0 chr4 168598722 168598811 -33729536 + MER115 DNA AcHobo 601 691 -2 227 271 42 31 chr4 168598813 168598909 -33729438 + MIR SINE MIR 87 183 -79 341 244 56 75 chr4 168598923 168599022 -33729325 - MIR SINE MIR -4 258 162 1671 162 0 26 chr4 168599022 168599325 -33729022 - AluJo SINE Alu -17 295 1 341 244 56 75 chr4 168599325 168599385 -33728962 - MIR SINE MIR -100 162 102 395 222 59 59 chr4 168599481 168599616 -33728731 - L2 LINE L2 -18 3295 3161 509 192 48 0 chr4 168599670 168599774 -33728573 + Tigger5 DNA MER2_type 2215 2323 0 1751 239 122 21 chr4 168599963 168600577 -33727770 - L2 LINE L2 -338 2976 2301 27 87 0 0 chr4 168601886 168601955 -33726392 + GC_rich Low_complexity Low_complexity 1 69 0 207 146 0 0 chr4 168602071 168602112 -33726235 + (GGA)n Simple_repeat Simple_repeat 1 41 0 329 273 120 104 chr4 168602289 168602673 -33725674 - L1M2 LINE L1 -5716 1133 744 228 67 0 0 chr4 168602836 168602866 -33725481 + (GGA)n Simple_repeat Simple_repeat 2 31 0 44 35 0 0 chr4 168602954 168603012 -33725335 + GC_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr4 168603026 168603047 -33725300 + GC_rich Low_complexity Low_complexity 1 21 0 570 15 0 0 chr4 168603462 168603529 -33724818 + (GA)n Simple_repeat Simple_repeat 1 67 0 258 81 0 0 chr4 168603528 168603565 -33724782 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 21 71 0 0 chr4 168605359 168605401 -33722946 + AT_rich Low_complexity Low_complexity 1 42 0 222 37 0 0 chr4 168607357 168607384 -33720963 + (T)n Simple_repeat Simple_repeat 1 27 0 1278 189 104 8 chr4 168607736 168607996 -33720351 - AluJo SINE Alu -27 285 1 825 138 0 31 chr4 168608186 168608316 -33720031 + FLAM_C SINE Alu 1 126 -7 202 195 268 0 chr4 168608423 168608505 -33719842 + MIR SINE MIR 121 224 -38 2050 105 42 7 chr4 168609283 168609568 -33718779 + AluSq SINE Alu 1 295 -18 1812 169 67 6 chr4 168610744 168611075 -33717272 - L1MD1 LINE L1 -8 6234 5884 3125 194 47 47 chr4 168611465 168612229 -33716118 + L1MC4a LINE L1 6873 7636 -172 320 211 89 32 chr4 168612229 168612352 -33715995 + L1MD3 LINE L1 7856 7985 -10 1079 155 0 6 chr4 168612436 168612604 -33715743 + AluSx SINE Alu 1 167 -145 180 369 107 20 chr4 168613711 168613860 -33714487 + MIR3 SINE MIR 30 191 -17 234 0 0 0 chr4 168614567 168614593 -33713754 + (A)n Simple_repeat Simple_repeat 1 26 0 2175 92 4 0 chr4 168614703 168614976 -33713371 + AluSp SINE Alu 1 274 -39 309 26 0 0 chr4 168614977 168615015 -33713332 + (TC)n Simple_repeat Simple_repeat 1 38 0 1723 144 63 0 chr4 168615120 168615405 -33712942 + AluJb SINE Alu 1 303 -9 29 0 0 0 chr4 168615501 168615530 -33712817 + AT_rich Low_complexity Low_complexity 1 29 0 821 204 0 33 chr4 168615598 168615728 -33712619 + FRAM SINE Alu 14 140 -172 4447 111 18 8 chr4 168615728 168616357 -33711990 + MER41B LTR ERV1 1 635 0 821 204 0 33 chr4 168616357 168616378 -33711969 + FRAM SINE Alu 140 160 -16 487 288 74 18 chr4 168616495 168616658 -33711689 + MIR SINE MIR 79 250 -12 644 198 0 0 chr4 168616978 168617084 -33711263 - FLAM_C SINE Alu -35 108 3 5622 76 83 2 chr4 168618228 168619593 -33708754 + L1PA10 LINE L1 4722 6152 -16 226 185 15 92 chr4 168620245 168620310 -33708037 + MIR SINE MIR 52 111 -97 183 241 56 0 chr4 168620564 168620618 -33707729 + MIR SINE MIR 141 197 -65 3364 134 41 4 chr4 168620619 168621127 -33707220 + MER1A DNA MER1_type 1 527 0 2200 96 3 0 chr4 168621156 168621447 -33706900 - AluSq SINE Alu -21 292 1 276 268 0 0 chr4 168621718 168621774 -33706573 - MLT1J LTR MaLR -345 166 111 271 293 13 0 chr4 168621774 168621793 -33706554 - LTR67 LTR ERVL -386 171 96 2013 143 13 0 chr4 168622364 168622664 -33705683 - AluSx SINE Alu -8 304 1 1927 138 6 25 chr4 168623179 168623497 -33704850 - AluSx SINE Alu 0 312 1 3246 135 64 104 chr4 168623611 168623697 -33704650 + Tigger2 DNA MER2_type 1 89 -2629 1555 174 3 24 chr4 168623697 168623990 -33704357 - AluJo SINE Alu -2 310 24 3246 135 64 104 chr4 168623990 168624093 -33704254 + Tigger2 DNA MER2_type 89 195 -2523 2263 77 0 32 chr4 168624093 168624406 -33703941 + AluSg SINE Alu 1 303 -7 3246 135 64 104 chr4 168624406 168624543 -33703804 + Tigger2 DNA MER2_type 195 336 -2382 2272 109 0 0 chr4 168624543 168624836 -33703511 + AluSg SINE Alu 1 293 -17 3246 135 64 104 chr4 168624836 168625306 -33703041 + Tigger2 DNA MER2_type 336 767 -1951 23 33 0 0 chr4 168625306 168625336 -33703011 + AT_rich Low_complexity Low_complexity 1 30 0 1284 129 95 0 chr4 168625353 168625585 -33702762 + Tigger2 DNA MER2_type 2461 2714 -4 2236 66 70 0 chr4 168625876 168626162 -33702185 - AluY SINE Alu -5 306 1 1961 131 3 0 chr4 168626205 168626496 -33701851 - AluSq SINE Alu -18 295 4 486 141 0 0 chr4 168626596 168626674 -33701673 + AluSg/x SINE Alu 217 294 -16 2273 98 0 0 chr4 168627598 168627894 -33700453 + AluY SINE Alu 1 296 -15 2282 110 0 0 chr4 168629138 168629448 -33698899 - AluSq SINE Alu -3 310 1 247 273 184 31 chr4 168630368 168630532 -33697815 + MIR SINE MIR 20 212 -50 190 303 121 30 chr4 168631333 168631432 -33696915 - MER5A DNA MER1_type -1 188 81 255 161 65 0 chr4 168631435 168631497 -33696850 + MER2 DNA MER2_type 141 206 -139 2049 48 0 22 chr4 168631614 168631883 -33696464 + L1PA6 LINE L1 5879 6141 -13 772 290 42 13 chr4 168632159 168632397 -33695950 + MLT1E LTR MaLR 349 593 0 619 238 38 0 chr4 168632403 168632588 -33695759 + L1M4 LINE L1 2841 3032 -3114 22 0 0 0 chr4 168633852 168633874 -33694473 + AT_rich Low_complexity Low_complexity 1 22 0 486 223 62 0 chr4 168634240 168634352 -33693995 - MIR3 SINE MIR -3 205 87 722 160 32 90 chr4 168634960 168635148 -33693199 + MER5B DNA MER1_type 1 177 -1 1561 55 15 10 chr4 168635464 168635664 -33692683 + AluY SINE Alu 1 201 -110 1862 159 27 3 chr4 168636609 168636910 -33691437 - AluJb SINE Alu -4 308 1 493 185 115 8 chr4 168637013 168637143 -33691204 - MER33 DNA MER1_type -4 359 216 465 236 141 6 chr4 168637274 168637438 -33690909 - MER33 DNA MER1_type -259 65 1 183 80 0 0 chr4 168638084 168638109 -33690238 + (T)n Simple_repeat Simple_repeat 1 25 0 515 263 50 99 chr4 168638203 168638465 -33689882 - MIR SINE MIR -12 250 2 653 146 8 31 chr4 168638697 168638827 -33689520 - FLAM_C SINE Alu -16 127 1 344 293 124 49 chr4 168638940 168639165 -33689182 + L1ME LINE L1 5256 5497 -624 218 170 94 0 chr4 168639175 168639228 -33689119 - MIR SINE MIR -140 122 65 428 266 114 27 chr4 168639479 168639663 -33688684 + MIR SINE MIR 51 250 -12 286 275 67 17 chr4 168640682 168640802 -33687545 + MER103 DNA DNA 32 157 -9 2133 123 3 0 chr4 168640978 168641286 -33687061 - AluSg1 SINE Alu 0 309 1 3230 198 24 9 chr4 168641893 168642530 -33685817 + MER82 DNA MER2_type 2 647 -6 30 45 0 0 chr4 168644355 168644399 -33683948 + AT_rich Low_complexity Low_complexity 1 44 0 2945 212 44 43 chr4 168644879 168644923 -33683424 - L1ME1 LINE L1 -1 7994 7952 1898 84 16 96 chr4 168644923 168645109 -33683238 - AluSq SINE Alu -6 297 146 2383 47 0 0 chr4 168645109 168645386 -33682961 - AluY SINE Alu -34 277 1 1898 84 16 96 chr4 168645386 168645521 -33682826 - AluSq SINE Alu -157 146 2 2945 212 44 43 chr4 168645521 168646208 -33682139 - L1ME1 LINE L1 -43 7952 7267 2279 143 56 45 chr4 168646208 168646544 -33681803 - L1MB8 LINE L1 -6 6172 5828 2053 141 0 10 chr4 168646544 168646849 -33681498 - AluJb SINE Alu -10 302 1 2279 143 56 45 chr4 168646849 168646996 -33681351 - L1MB8 LINE L1 -350 5828 5684 2945 212 44 43 chr4 168646996 168647100 -33681247 - L1ME1 LINE L1 -728 7267 7165 2300 106 3 0 chr4 168647100 168647402 -33680945 - AluSq SINE Alu -10 303 1 2945 212 44 43 chr4 168647402 168647650 -33680697 - L1ME1 LINE L1 -830 7165 5310 347 222 65 107 chr4 168647793 168648054 -33680293 - L2 LINE L2 -815 2499 2250 1259 190 53 115 chr4 168648654 168649070 -33679277 - MLT1B LTR MaLR 0 390 1 200 264 118 73 chr4 168650612 168650722 -33677625 - L2 LINE L2 -14 3258 3144 1656 130 126 0 chr4 168652354 168652615 -33675732 - AluSx SINE Alu -18 294 1 950 274 61 70 chr4 168652868 168653343 -33675004 - L1MC4a LINE L1 -1974 5834 5364 25 102 0 0 chr4 168654098 168654186 -33674161 + AT_rich Low_complexity Low_complexity 1 88 0 279 288 0 0 chr4 168654266 168654332 -33674015 - MIR SINE MIR -3 259 194 773 224 46 0 chr4 168654607 168654759 -33673588 + FAM SINE Alu 1 159 -16 1255 184 65 44 chr4 168755627 168756012 -33572335 - pTR5 LTR ERV1 -1303 1135 743 676 56 11 11 chr4 168756013 168756102 -33572245 - AluY SINE Alu -221 90 2 2055 143 0 3 chr4 168756792 168757093 -33571254 - AluSx SINE Alu -12 300 1 312 173 75 128 chr4 168757265 168757398 -33570949 - L1MDa LINE L1 -2140 4400 4275 6798 197 87 25 chr4 168757411 168757974 -33570373 - L1MDa LINE L1 -3392 3148 2621 2353 108 0 3 chr4 168757974 168758280 -33570067 - AluSx SINE Alu -7 305 1 6798 197 87 25 chr4 168758280 168759995 -33568352 - L1MDa LINE L1 -3919 2621 724 1058 214 180 46 chr4 168759996 168760319 -33568028 - L1MDa LINE L1 -5834 706 341 351 0 0 0 chr4 168760335 168760374 -33567973 + (TG)n Simple_repeat Simple_repeat 2 40 0 849 118 0 52 chr4 168760377 168760513 -33567834 - FLAM_C SINE Alu -14 129 1 1270 216 90 13 chr4 168760513 168760587 -33567760 - L1MDa LINE L1 -6180 360 293 207 0 0 0 chr4 168760587 168760610 -33567737 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1270 216 90 13 chr4 168760610 168760836 -33567511 - L1MDa LINE L1 -6247 293 37 1417 159 28 4 chr4 168761325 168761576 -33566771 + L1MA7 LINE L1 6031 6287 -4 26 0 0 0 chr4 168761576 168761602 -33566745 + AT_rich Low_complexity Low_complexity 1 26 0 2451 59 10 0 chr4 168763165 168763469 -33564878 - AluY SINE Alu -4 307 1 1245 152 9 39 chr4 168763758 168763989 -33564358 + Tigger2a DNA MER2_type 1 224 -210 1585 203 0 30 chr4 168764005 168764195 -33564152 - AluJo SINE Alu -16 296 117 2378 116 55 17 chr4 168764195 168764556 -33563791 + THE1C LTR MaLR 1 375 0 1585 203 0 30 chr4 168764556 168764670 -33563677 - AluJo SINE Alu -195 117 1 842 194 0 15 chr4 168764675 168764858 -33563489 - FLAM_C SINE Alu 0 181 1 812 109 259 57 chr4 168764866 168765059 -33563288 + Tigger2a DNA MER2_type 213 444 0 447 233 35 76 chr4 168765117 168765289 -33563058 + L1MC5 LINE L1 7746 7910 -51 2387 97 0 0 chr4 168766006 168766317 -33562030 + AluY SINE Alu 1 311 0 5910 132 209 85 chr4 168766347 168767857 -33560490 - pTR5 LTR ERV1 0 2438 743 1796 154 38 7 chr4 168768080 168768373 -33559974 + AluSx SINE Alu 1 302 -10 2076 123 0 35 chr4 168768739 168769056 -33559291 - AluSx SINE Alu -6 306 1 198 0 0 0 chr4 168769070 168769092 -33559255 + (GAAAA)n Simple_repeat Simple_repeat 4 25 0 2436 139 66 5 chr4 168769124 168769263 -33559084 - Tigger2 DNA MER2_type 0 2718 2589 1870 154 26 16 chr4 168769263 168769568 -33558779 - AluJb SINE Alu -4 308 1 2436 139 66 5 chr4 168769568 168769838 -33558509 - Tigger2 DNA MER2_type -129 2589 2284 2489 72 3 0 chr4 168769857 168770162 -33558185 + AluSq SINE Alu 1 306 -7 350 137 0 0 chr4 168770163 168770214 -33558133 - Tigger2 DNA MER2_type -2666 52 2 1264 184 129 44 chr4 168770695 168771045 -33557302 - MLT1F LTR MaLR -9 533 175 447 134 30 0 chr4 168771040 168771107 -33557240 - Tigger2 DNA MER2_type -2649 69 1 * 2482 69 0 3 chr4 168771210 168771513 -33556834 + AluSg SINE Alu 1 302 -8 1087 193 42 29 chr4 168772054 168772293 -33556054 - Charlie1 DNA MER1_type -666 2095 1854 813 243 105 0 chr4 168772305 168772544 -33555803 + Charlie1 DNA MER1_type 1589 1852 -909 1669 154 34 20 chr4 168772545 168772716 -33555631 - AluSg SINE Alu -13 297 119 180 0 0 0 chr4 168772716 168772736 -33555611 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 1669 154 34 20 chr4 168772736 168772857 -33555490 - AluSg SINE Alu -191 119 1 1607 161 65 11 chr4 168772887 168773166 -33555181 - AluJo SINE Alu -15 297 4 6278 125 14 13 chr4 168773693 168774056 -33554291 - L1PB1 LINE L1 0 6151 5790 243 0 0 0 chr4 168774056 168774083 -33554264 + (TA)n Simple_repeat Simple_repeat 2 28 0 6278 125 14 13 chr4 168774083 168774270 -33554077 - L1PB1 LINE L1 -361 5790 5605 2562 64 0 6 chr4 168774270 168774582 -33553765 - AluY SINE Alu -1 310 1 6278 125 14 13 chr4 168774582 168775249 -33553098 - L1PB1 LINE L1 -546 5605 4933 323 130 111 0 chr4 168775559 168775613 -33552734 - L1MC/D LINE L1 -708 5651 5592 829 157 75 2 chr4 168775673 168775836 -33552511 - L1MC/D LINE L1 -538 5583 5434 1466 207 59 52 chr4 168775923 168776310 -33552037 + MLT1B LTR MaLR 1 390 0 3407 123 58 2 chr4 168776668 168777164 -33551183 - MER1A DNA MER1_type 0 527 4 2139 113 0 3 chr4 168779581 168779887 -33548460 - AluSx SINE Alu 0 305 1 2198 76 31 3 chr4 168780280 168780569 -33547778 + AluSc SINE Alu 1 297 -12 1614 179 21 7 chr4 168780814 168781104 -33547243 - AluJo SINE Alu -18 294 1 218 291 0 51 chr4 168781911 168781990 -33546357 - L2 LINE L2 -18 3254 3180 1648 187 3 10 chr4 168782813 168783107 -33545240 - AluJo SINE Alu -20 292 1 2217 93 39 0 chr4 168783434 168783714 -33544633 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr4 168783974 168783995 -33544352 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr4 168784778 168784808 -33543539 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 183 327 96 0 chr4 168785235 168785339 -33543008 + MIR SINE MIR 65 178 -84 612 120 75 53 chr4 168788128 168788261 -33540086 - AluSg/x SINE Alu -3 307 172 218 250 0 0 chr4 168788425 168788465 -33539882 + polypyrimidine Low_complexity Low_complexity 1 40 0 1604 158 14 18 chr4 168788465 168788743 -33539604 - AluJo SINE Alu -21 291 15 2136 134 3 0 chr4 168788909 168789214 -33539133 - AluSx SINE Alu -6 306 1 25 0 0 0 chr4 168790031 168790056 -33538291 + AT_rich Low_complexity Low_complexity 1 25 0 227 53 0 26 chr4 168791310 168791348 -33536999 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 767 189 24 41 chr4 168791353 168791522 -33536825 - AluJo SINE Alu -35 277 112 1239 140 4 109 chr4 168791522 168791631 -33536716 - AluJo SINE Alu -70 242 174 1410 117 202 12 chr4 168791631 168791878 -33536469 - AluSg1 SINE Alu -15 294 1 1239 140 4 109 chr4 168791878 168792025 -33536322 - AluJo SINE Alu -138 174 13 391 186 23 12 chr4 168793128 168793214 -33535133 - MLT1D LTR MaLR -2 503 417 472 223 130 41 chr4 168793322 168793472 -33534875 - MLT1D LTR MaLR -75 429 237 1948 115 4 0 chr4 168793472 168793733 -33534614 - AluSx SINE Alu -8 304 43 472 223 130 41 chr4 168793733 168793772 -33534575 - MLT1D LTR MaLR -267 237 203 949 167 0 13 chr4 168793953 168794134 -33534213 - AluSg/x SINE Alu 0 312 138 3359 85 24 25 chr4 168794134 168794637 -33533710 - MLT2A1 LTR ERVL 0 515 1 731 142 22 37 chr4 168794646 168794780 -33533567 - FLAM_C SINE Alu -1 132 1 1013 293 45 62 chr4 168794896 168795360 -33532987 - MLT1K LTR MaLR 0 588 133 1778 145 10 10 chr4 168795364 168795653 -33532694 + AluJo SINE Alu 1 289 -23 2185 76 28 10 chr4 168795782 168796071 -33532276 - AluY SINE Alu -17 294 1 2481 58 16 13 chr4 168797507 168797816 -33530531 + AluY SINE Alu 1 310 -1 736 168 8 32 chr4 168798396 168798521 -33529826 + FLAM_A SINE Alu 1 122 -11 2307 67 0 0 chr4 168798571 168798856 -33529491 - AluY SINE Alu -5 306 22 2157 95 4 0 chr4 168798887 168799161 -33529186 + AluSp SINE Alu 1 275 -38 383 169 23 23 chr4 168799161 168799291 -33529056 + GA-rich Low_complexity Low_complexity 4 133 0 360 267 73 13 chr4 168799430 168799580 -33528767 + MIR SINE MIR 23 181 -81 26 0 0 0 chr4 168800540 168800566 -33527781 + AT_rich Low_complexity Low_complexity 1 26 0 1417 159 28 4 chr4 168800566 168800817 -33527530 - L1MA7 LINE L1 -4 6287 6031 1270 216 90 13 chr4 168801306 168801532 -33526815 + L1MDa LINE L1 37 293 -6247 207 0 0 0 chr4 168801532 168801555 -33526792 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1270 216 90 13 chr4 168801555 168801629 -33526718 + L1MDa LINE L1 293 360 -6180 849 106 0 45 chr4 168801629 168801761 -33526586 + FLAM_C SINE Alu 1 126 -17 333 0 0 0 chr4 168801768 168801805 -33526542 + (CA)n Simple_repeat Simple_repeat 2 38 0 1058 224 180 43 chr4 168801821 168802143 -33526204 + L1MDa LINE L1 341 706 -5834 6690 181 112 26 chr4 168802144 168803852 -33524495 + L1MDa LINE L1 724 2578 -3962 2305 107 0 7 chr4 168803858 168804166 -33524181 + AluSx SINE Alu 1 306 -6 191 364 34 11 chr4 168804726 168804814 -33523533 + MIR SINE MIR 16 105 -103 442 192 0 0 chr4 168804856 168804929 -33523418 + MER5A DNA MER1_type 1 73 -116 1846 145 42 3 chr4 168804932 168805215 -33523132 + AluSx SINE Alu 1 294 -18 797 150 0 37 chr4 168805241 168805343 -33523004 + (GGAA)n Simple_repeat Simple_repeat 1 94 -86 2314 78 14 0 chr4 168805343 168805637 -33522710 + AluY SINE Alu 1 298 -13 797 150 0 37 chr4 168805637 168805721 -33522626 + (GGAA)n Simple_repeat Simple_repeat 94 180 0 1101 331 55 34 chr4 168805754 168806467 -33521880 + L1M3a LINE L1 2 729 -5226 1670 258 32 43 chr4 168806557 168807177 -33521170 + L1M3f LINE L1 557 1169 -4159 782 178 0 0 chr4 168807183 168807301 -33521046 + MER5A DNA MER1_type 72 189 0 362 336 13 13 chr4 168807380 168807529 -33520818 - MIR SINE MIR -16 246 98 542 293 78 78 chr4 168807585 168807919 -33520428 + LTR16A LTR ERVL 117 450 0 311 356 20 0 chr4 168807919 168808020 -33520327 - MIR SINE MIR -159 103 1 240 292 208 8 chr4 168808083 168808203 -33520144 - MIR3 SINE MIR -33 175 32 517 304 111 5 chr4 168808601 168808818 -33519529 + MIR SINE MIR 15 254 -8 361 280 193 18 chr4 168809435 168809653 -33518694 - MIR SINE MIR 0 262 7 2231 96 3 7 chr4 168810001 168810293 -33518054 + AluSq SINE Alu 1 291 -22 574 214 0 10 chr4 168811572 168811675 -33516672 - MER5B DNA MER1_type -76 102 1 535 29 143 0 chr4 168811860 168811930 -33516417 - MADE1 DNA Mariner 0 80 1 1853 128 17 7 chr4 168812233 168812530 -33515817 - MSTB LTR MaLR -126 300 1 2323 106 0 3 chr4 168813031 168813342 -33515005 + AluSg SINE Alu 1 310 0 362 283 53 0 chr4 168813467 168813580 -33514767 - L2 LINE L2 -1 3312 3194 2266 82 16 7 chr4 168814116 168814420 -33513927 - AluSg SINE Alu -3 307 1 1811 102 72 0 chr4 168816238 168816382 -33511965 - AluSx SINE Alu -28 284 152 279 0 0 0 chr4 168816382 168816413 -33511934 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 1811 102 72 0 chr4 168816413 168816533 -33511814 - AluSx SINE Alu -160 152 1 2330 76 13 0 chr4 168816544 168816848 -33511499 - AluY SINE Alu -3 308 1 463 243 29 52 chr4 168817260 168817333 -33511014 - L1ME LINE L1 -611 5559 5486 746 185 8 8 chr4 168817333 168817463 -33510884 - FLAM_A SINE Alu -3 130 1 463 243 29 52 chr4 168817463 168817562 -33510785 - L1ME LINE L1 -684 5486 5391 2185 117 3 0 chr4 168817574 168817873 -33510474 + AluSg SINE Alu 1 300 -10 230 230 54 0 chr4 168817878 168817952 -33510395 + L1PA15 LINE L1 6088 6165 0 2291 104 3 0 chr4 168818546 168818844 -33509503 + AluSp SINE Alu 2 300 -13 1714 150 10 80 chr4 168819095 168819482 -33508865 - L1MA6 LINE L1 -159 6141 5782 3021 157 25 82 chr4 168819482 168819743 -33508604 - MER7C DNA MER2_type -2426 602 328 2996 96 2 15 chr4 168819743 168820150 -33508197 + L1PA11 LINE L1 5767 6168 -6 3021 157 25 82 chr4 168820150 168820193 -33508154 - MER7C DNA MER2_type -2700 328 284 977 207 37 0 chr4 168820193 168820357 -33507990 + FAM SINE Alu 1 170 -5 3021 157 25 82 chr4 168820357 168820547 -33507800 - MER7C DNA MER2_type -2744 284 148 7847 32 11 2 chr4 168820547 168822219 -33506128 + L1PA5 LINE L1 4472 6154 0 3021 157 25 82 chr4 168822219 168822359 -33505988 - MER7C DNA MER2_type -2880 148 2 493 156 13 6 chr4 168822374 168822463 -33505884 - L1ME LINE L1 -391 5775 5692 * 1405 183 22 0 chr4 168822461 168822729 -33505618 - L1MA6 LINE L1 -811 5335 5062 1203 188 5 0 chr4 168822732 168822963 -33505384 - AluJb SINE Alu 0 315 84 882 133 0 0 chr4 168822976 168823111 -33505236 - L1MA6 LINE L1 -1096 5050 4916 2070 130 7 0 chr4 168823112 168823404 -33504943 - AluSx SINE Alu -17 295 2 1700 148 0 4 chr4 168823404 168823667 -33504680 - L1MA6 LINE L1 -1810 4336 4075 1703 233 44 4 chr4 168823669 168824124 -33504223 - L1ME LINE L1 -820 5326 4854 738 336 13 0 chr4 168824248 168824480 -33503867 + MIR SINE MIR 12 246 -16 387 314 0 12 chr4 168825151 168825320 -33503027 + (CA)n Simple_repeat Simple_repeat 1 167 0 223 313 89 18 chr4 168825388 168825500 -33502847 - MIR SINE MIR -110 152 33 2136 111 10 0 chr4 168826013 168826301 -33502046 - AluSc SINE Alu -18 291 1 227 297 16 0 chr4 168826314 168826378 -33501969 - MIR SINE MIR -186 76 12 379 283 26 9 chr4 168827626 168827739 -33500608 + MIR SINE MIR 148 262 0 751 270 106 4 chr4 168828057 168828283 -33500064 + MIR SINE MIR 12 260 -2 306 0 0 0 chr4 168828358 168828392 -33499955 + (CA)n Simple_repeat Simple_repeat 2 35 0 2192 116 10 0 chr4 168829475 168829769 -33498578 + AluSx SINE Alu 1 297 -15 2174 149 18 39 chr4 168829782 168830164 -33498183 + MLT1B LTR MaLR 1 374 -16 1392 169 62 127 chr4 168830164 168830500 -33497847 + MLT2D LTR ERVL 1 304 -110 2754 132 42 5 chr4 168830500 168830908 -33497439 - MSTB LTR MaLR -3 423 1 1392 169 62 127 chr4 168830908 168831003 -33497344 + MLT2D LTR ERVL 304 404 -10 442 218 67 109 chr4 168831589 168831754 -33496593 + MLT1E2 LTR MaLR 1 158 -468 2015 118 13 22 chr4 168831860 168832175 -33496172 + AluSx SINE Alu 1 312 0 1751 82 9 0 chr4 168832214 168832434 -33495913 + L1PA7 LINE L1 5933 6154 0 234 118 29 0 chr4 168832715 168832773 -33495574 + Alu SINE Alu 250 308 0 330 115 26 77 chr4 168832773 168832824 -33495523 + L1M LINE L1 5340 5387 -2421 1692 246 59 64 chr4 168832824 168833418 -33494929 + MLT1E LTR MaLR 1 591 -2 330 115 26 77 chr4 168833418 168833444 -33494903 + L1M LINE L1 5387 5413 -2395 2421 71 3 0 chr4 168833452 168833749 -33494598 + AluY SINE Alu 1 298 -13 21 0 0 0 chr4 168833837 168833858 -33494489 + AT_rich Low_complexity Low_complexity 1 21 0 2237 81 27 3 chr4 168834078 168834374 -33493973 + AluY SINE Alu 1 303 -8 200 184 20 0 chr4 168834749 168834798 -33493549 + (TA)n Simple_repeat Simple_repeat 2 51 0 183 156 0 0 chr4 168834825 168834857 -33493490 + (TA)n Simple_repeat Simple_repeat 1 32 0 27 0 0 0 chr4 168835107 168835134 -33493213 + AT_rich Low_complexity Low_complexity 1 27 0 30 0 0 0 chr4 168835473 168835503 -33492844 + AT_rich Low_complexity Low_complexity 1 30 0 2312 131 31 19 chr4 168836362 168836722 -33491625 - THE1B LTR MaLR 0 364 1 449 244 88 56 chr4 168837867 168838027 -33490320 - L2 LINE L2 0 3272 3108 227 264 33 116 chr4 168838069 168838190 -33490157 + MIR3 SINE MIR 59 169 -39 308 315 28 28 chr4 168838257 168838365 -33489982 + MER5B DNA MER1_type 36 143 -35 2152 84 3 87 chr4 168838428 168838750 -33489597 + AluSq SINE Alu 3 297 -16 320 273 97 7 chr4 168839044 168839198 -33489149 - L2 LINE L2 -459 2855 2688 1685 175 50 0 chr4 168839226 168839523 -33488824 - AluJb SINE Alu 0 312 1 1191 241 23 16 chr4 168839527 168839830 -33488517 + L1ME3A LINE L1 5602 5906 -264 746 190 0 0 chr4 168839834 168839950 -33488397 + FLAM_C SINE Alu 3 118 -25 203 194 0 0 chr4 168840036 168840072 -33488275 - MER5B DNA MER1_type -139 39 4 1960 89 18 39 chr4 168840105 168840385 -33487962 + AluSc SINE Alu 2 275 -34 903 45 0 0 chr4 168840397 168840509 -33487838 + (GGAA)n Simple_repeat Simple_repeat 4 115 0 345 96 0 19 chr4 168840511 168840563 -33487784 + AluS SINE Alu 21 71 -232 2338 91 10 0 chr4 168840784 168841092 -33487255 + AluSp SINE Alu 1 311 -2 349 89 0 0 chr4 168841102 168841147 -33487200 + L1MA10 LINE L1 5903 5947 -221 1147 77 7 13 chr4 168841151 168841299 -33487048 + AluSc SINE Alu 153 301 -8 2117 167 28 10 chr4 168841299 168841689 -33486658 + L1MA10 LINE L1 5936 6332 -2 294 188 0 47 chr4 168841914 168841978 -33486369 - HsTC2 DNA Tc2 -1825 73 13 763 149 0 9 chr4 168842982 168843096 -33485251 + FLAM_C SINE Alu 2 114 -19 378 0 0 0 chr4 168843103 168843145 -33485202 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 198 103 0 0 chr4 168843262 168843291 -33485056 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1891 138 0 69 chr4 168843530 168843646 -33484701 + AluSx SINE Alu 1 123 -189 4100 194 79 9 chr4 168843646 168844418 -33483929 - LTR1B LTR ERV1 0 826 1 1891 138 0 69 chr4 168844418 168844620 -33483727 + AluSx SINE Alu 123 297 -15 296 220 43 24 chr4 168844710 168844803 -33483544 - MER5A DNA MER1_type -86 103 1 191 323 108 21 chr4 168844861 168844954 -33483393 - L2 LINE L2 -214 3058 2958 26 30 0 0 chr4 168844995 168845028 -33483319 + AT_rich Low_complexity Low_complexity 1 33 0 597 247 73 0 chr4 168845249 168845382 -33482965 + MLT1G LTR MaLR 404 590 0 525 299 211 40 chr4 168845387 168845778 -33482569 + L2 LINE L2 1271 1594 -1720 3680 69 0 7 chr4 168845778 168846229 -33482118 + LTR7 LTR ERV1 1 448 -2 525 299 211 40 chr4 168846229 168846710 -33481637 + L2 LINE L2 1594 2292 -1022 2289 90 3 0 chr4 168846710 168847000 -33481347 + AluSp SINE Alu 1 291 -22 326 207 35 11 chr4 168847000 168847087 -33481260 + L1MC4 LINE L1 6615 6703 -1339 289 123 31 0 chr4 168847087 168847152 -33481195 + (TA)n Simple_repeat Simple_repeat 2 68 0 455 304 270 22 chr4 168847155 168847658 -33480689 + L2 LINE L2 2343 2970 -344 302 377 0 38 chr4 168847721 168847827 -33480520 + L2 LINE L2 3171 3272 0 343 361 154 0 chr4 168847849 168848220 -33480127 - L2 LINE L2 -993 2321 1894 2448 92 3 0 chr4 168848345 168848651 -33479696 - AluSg SINE Alu -3 307 1 271 159 58 29 chr4 168848808 168848877 -33479470 + MLT1J1 LTR MaLR 65 135 -311 237 296 120 8 chr4 168848981 168849106 -33479241 + MLT1J LTR MaLR 323 461 -50 2281 168 20 8 chr4 168849273 168849671 -33478676 - MER57A LTR ERV1 0 403 1 5139 100 19 6 chr4 168849844 168850523 -33477824 - LTR12 LTR ERV1 0 688 1 859 210 42 42 chr4 168850602 168850888 -33477459 - pTR5 LTR ERV1 -1410 1028 743 1317 215 109 41 chr4 168850902 168851537 -33476810 - MER61E LTR ERV1 0 794 6 1673 175 0 7 chr4 168851538 168851812 -33476535 - AluJo SINE Alu -40 272 1 1643 160 132 45 chr4 168851915 168852168 -33476179 - MER57A LTR ERV1 0 403 109 2419 63 0 20 chr4 168852168 168852468 -33475879 + AluY SINE Alu 1 294 -17 1643 160 132 45 chr4 168852468 168852570 -33475777 - MER57A LTR ERV1 -294 109 17 443 141 0 26 chr4 168852570 168852648 -33475699 - MER57A-int LTR ERV1 -25 7512 7437 649 211 184 45 chr4 168852650 168852961 -33475386 - LTR54 LTR ERV1 -112 386 1 1848 166 3 13 chr4 168853326 168853639 -33474708 - AluSx SINE Alu -2 310 1 734 202 53 99 chr4 168854227 168854489 -33473858 + MER34B LTR ERV1 1 250 -315 195 42 0 0 chr4 168854501 168854525 -33473822 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 2191 157 74 38 chr4 168854532 168854781 -33473566 - MER4D LTR ERV1 -442 461 188 1868 152 31 0 chr4 168854781 168855071 -33473276 - AluJb SINE Alu -13 299 1 2191 157 74 38 chr4 168855071 168855266 -33473081 - MER4D LTR ERV1 -715 188 1 388 184 34 9 chr4 168855421 168855548 -33472799 - MER34B LTR ERV1 0 727 446 2769 178 69 18 chr4 168855554 168855597 -33472750 - MER21A LTR ERV1 0 931 892 5636 75 149 0 chr4 168855597 168856316 -33472031 - LTR12 LTR ERV1 0 826 1 2769 178 69 18 chr4 168856316 168857052 -33471295 - MER21A LTR ERV1 -39 892 1 656 166 13 80 chr4 168857136 168857287 -33471060 - LTR49 LTR ERV1 -250 345 205 1390 125 0 5 chr4 168857303 168857503 -33470844 + AluSg/x SINE Alu 100 298 -14 298 182 36 0 chr4 168857531 168857586 -33470761 - LTR49 LTR ERV1 -395 200 144 597 208 22 46 chr4 168857607 168857775 -33470572 - LTR49 LTR ERV1 -379 206 1 2331 134 36 0 chr4 168858183 168858519 -33469828 - MER7A DNA MER2_type 0 346 1 22 0 0 0 chr4 168859939 168859961 -33468386 + AT_rich Low_complexity Low_complexity 1 22 0 231 36 0 0 chr4 168861484 168861512 -33466835 + (TG)n Simple_repeat Simple_repeat 2 29 0 327 49 0 0 chr4 168861981 168862022 -33466325 + (TG)n Simple_repeat Simple_repeat 1 41 0 240 102 41 41 chr4 168862272 168862321 -33466026 - L2 LINE L2 -1 3312 3264 217 324 45 0 chr4 168862405 168862516 -33465831 - MIR SINE MIR -86 176 61 821 292 56 24 chr4 168863036 168863464 -33464883 - L2 LINE L2 -78 3235 2791 1228 241 161 31 chr4 168863491 168863529 -33464818 - MLT2B1 LTR ERVL -8 512 480 297 0 0 0 chr4 168863529 168863562 -33464785 + (CA)n Simple_repeat Simple_repeat 2 34 0 1228 241 161 31 chr4 168863562 168863976 -33464371 - MLT2B1 LTR ERVL -40 480 1 7618 141 37 11 chr4 168863979 168865204 -33463143 - ERVL-B1 LTR ERVL -11 5753 4498 4599 299 113 30 chr4 168865241 168865428 -33462919 - L2 LINE L2 -553 2761 2591 1416 200 142 0 chr4 168865428 168865688 -33462659 - AluJo SINE Alu -4 298 2 4599 299 113 30 chr4 168865688 168865914 -33462433 - L2 LINE L2 -723 2591 2385 511 145 34 43 chr4 168865914 168866031 -33462316 + L1MA9 LINE L1 6192 6307 -5 4599 299 113 30 chr4 168866031 168866445 -33461902 - L2 LINE L2 -929 2385 2007 2174 116 10 0 chr4 168866445 168866747 -33461600 + AluSp SINE Alu 1 305 -8 4599 299 113 30 chr4 168866747 168867346 -33461001 - L2 LINE L2 -1307 2007 1459 186 43 0 0 chr4 168867346 168867369 -33460978 + (TTG)n Simple_repeat Simple_repeat 3 25 0 4599 299 113 30 chr4 168867369 168867596 -33460751 - L2 LINE L2 -1855 1459 1252 941 210 13 0 chr4 168867596 168867753 -33460594 + FRAM SINE Alu 1 159 -7 4599 299 113 30 chr4 168867753 168868325 -33460022 - L2 LINE L2 -2062 1252 347 1527 132 87 26 chr4 168868331 168868616 -33459731 - AluJo SINE Alu 0 301 1 586 194 21 7 chr4 168868620 168868764 -33459583 - MER33 DNA MER1_type 0 363 218 386 139 26 130 chr4 168868765 168868840 -33459507 + L1MDa LINE L1 1809 1870 -4670 2398 67 0 61 chr4 168868840 168869167 -33459180 - AluSq SINE Alu -2 311 5 386 139 26 130 chr4 168869167 168869206 -33459141 + L1MDa LINE L1 1870 1911 -4629 730 229 7 0 chr4 168869206 168869350 -33458997 - MER33 DNA MER1_type -179 145 1 650 272 45 41 chr4 168869351 168869619 -33458728 - L2 LINE L2 -2959 355 87 243 125 0 0 chr4 168871393 168871433 -33456914 + (C)n Simple_repeat Simple_repeat 1 40 0 844 240 66 16 chr4 168871866 168872108 -33456239 - MIR SINE MIR -3 259 6 2093 103 3 26 chr4 168874702 168875004 -33453343 - AluSx SINE Alu -17 295 1 543 144 0 0 chr4 168878349 168878446 -33449901 + (TCTA)n Simple_repeat Simple_repeat 3 99 0 1740 182 0 0 chr4 168878446 168878726 -33449621 - AluSx SINE Alu -32 280 1 22 35 0 0 chr4 168878735 168878764 -33449583 + AT_rich Low_complexity Low_complexity 1 29 0 2367 53 7 10 chr4 168878863 168879162 -33449185 - AluY SINE Alu -13 298 1 518 267 80 21 chr4 168880444 168880631 -33447716 - MIR SINE MIR -50 212 15 22 80 0 0 chr4 168881715 168881765 -33446582 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr4 168881938 168881966 -33446381 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 168882197 168882222 -33446125 + AT_rich Low_complexity Low_complexity 1 25 0 795 11 0 0 chr4 168884046 168884138 -33444209 + (TAAAA)n Simple_repeat Simple_repeat 4 95 0 199 284 21 63 chr4 168885666 168885761 -33442586 - MIR SINE MIR -78 184 94 315 0 0 0 chr4 168885850 168885885 -33442462 + (TG)n Simple_repeat Simple_repeat 1 35 0 360 0 0 0 chr4 168885957 168885997 -33442350 + (TG)n Simple_repeat Simple_repeat 1 40 0 703 199 0 8 chr4 168888561 168888692 -33439655 - FLAM_C SINE Alu -3 130 1 2535 71 0 3 chr4 168888747 168889057 -33439290 - AluY SINE Alu -2 309 1 22 0 0 0 chr4 168889117 168889139 -33439208 + AT_rich Low_complexity Low_complexity 1 22 0 2864 127 14 18 chr4 168890004 168890493 -33437854 + L1PB3 LINE L1 5666 6152 -2 2287 42 49 3 chr4 168890804 168891090 -33437257 - AluY SINE Alu -6 305 7 202 358 88 26 chr4 168891905 168892098 -33436249 - L3 LINE CR1 -490 1087 883 1830 152 10 7 chr4 168892115 168892405 -33435942 + AluSx SINE Alu 3 293 -19 2196 92 7 0 chr4 168893384 168893693 -33434654 + AluSq SINE Alu 1 311 0 381 131 0 0 chr4 168896355 168896416 -33431931 + (CA)n Simple_repeat Simple_repeat 2 62 0 180 111 0 0 chr4 168897817 168897844 -33430503 + (CACCAT)n Simple_repeat Simple_repeat 1 27 0 273 152 61 15 chr4 168897869 168897935 -33430412 - MIR SINE MIR -71 191 123 2019 88 42 14 chr4 168898993 168899276 -33429071 - AluSg SINE Alu -16 294 4 253 333 0 11 chr4 168899823 168899916 -33428431 + A-rich Low_complexity Low_complexity 1 92 0 1970 113 3 69 chr4 168902336 168902468 -33425879 + AluSx SINE Alu 2 141 -171 2272 83 14 0 chr4 168902468 168902756 -33425591 + AluSg SINE Alu 1 292 -18 1970 113 3 69 chr4 168902756 168902941 -33425406 + AluSx SINE Alu 141 298 -14 29 47 0 0 chr4 168903000 168903043 -33425304 + AT_rich Low_complexity Low_complexity 1 43 0 2301 111 20 11 chr4 168903675 168904025 -33424322 + THE1A LTR MaLR 3 355 0 239 304 135 20 chr4 168905055 168905156 -33423191 - MIR SINE MIR -75 187 62 1751 193 0 10 chr4 168905156 168905457 -33422890 + AluJo SINE Alu 3 300 -12 239 304 135 20 chr4 168905457 168905503 -33422844 - MIR SINE MIR -200 62 23 520 259 99 0 chr4 168905560 168905722 -33422625 + MIR SINE MIR 73 250 -12 358 293 140 9 chr4 168906118 168906347 -33422000 - MER112 DNA MER1_type -1 259 1 2048 151 15 15 chr4 168907168 168907505 -33420842 - MER1B DNA MER1_type 0 337 1 26 50 0 0 chr4 168907871 168907911 -33420436 + AT_rich Low_complexity Low_complexity 1 40 0 441 266 126 40 chr4 168909162 168909384 -33418963 + L2 LINE L2 3073 3313 0 3259 85 2 17 chr4 168909888 168910234 -33418113 + L1PA13 LINE L1 5699 6038 -125 7888 63 9 2 chr4 168910234 168911234 -33417113 + LTR13 LTR ERVK 1 1007 0 3259 85 2 17 chr4 168911234 168911359 -33416988 + L1PA13 LINE L1 6038 6163 0 28 61 0 0 chr4 168913080 168913129 -33415218 + AT_rich Low_complexity Low_complexity 1 49 0 724 295 54 9 chr4 168913143 168913367 -33414980 - MIR SINE MIR 0 262 29 2262 123 0 0 chr4 168913483 168913793 -33414554 - AluSx SINE Alu -2 310 1 25 31 0 0 chr4 168914438 168914470 -33413877 + AT_rich Low_complexity Low_complexity 1 32 0 278 297 72 29 chr4 168915001 168915139 -33413208 + MIR SINE MIR 49 192 -70 310 303 96 32 chr4 168915412 168915600 -33412747 - MIR SINE MIR -16 246 47 21 36 0 0 chr4 168916119 168916147 -33412200 + AT_rich Low_complexity Low_complexity 1 28 0 283 304 71 77 chr4 168916851 168917203 -33411144 + L2 LINE L2 719 1068 -2246 * 639 265 145 27 chr4 168917182 168917548 -33410799 - L2 LINE L2 -3 3310 2902 485 296 190 25 chr4 168917535 168917856 -33410491 + L2 LINE L2 1073 1446 -1868 * 296 328 64 18 chr4 168918046 168918217 -33410130 + L3 LINE CR1 1356 1534 -43 1864 140 17 14 chr4 168918675 168918967 -33409380 - AluSx SINE Alu -17 295 3 6534 164 42 11 chr4 168919892 168921966 -33406381 + L1PB4 LINE L1 4006 6156 0 22 35 0 0 chr4 168922375 168922404 -33405943 + AT_rich Low_complexity Low_complexity 1 29 0 505 58 0 0 chr4 168923797 168923866 -33404481 + L1HS LINE L1 6085 6153 -2 30 45 0 0 chr4 168923866 168923910 -33404437 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr4 168924354 168924375 -33403972 + AT_rich Low_complexity Low_complexity 1 21 0 358 301 105 26 chr4 168925971 168926124 -33402223 + MIR SINE MIR 29 193 -69 690 257 53 0 chr4 168926480 168926667 -33401680 - Charlie1 DNA MER1_type -976 1785 1589 1087 193 42 29 chr4 168926679 168926918 -33401429 + Charlie1 DNA MER1_type 1854 2095 -666 358 314 58 0 chr4 168927337 168927458 -33400889 + MLT1F LTR MaLR 9 136 -406 1932 110 14 3 chr4 168927458 168927748 -33400599 - AluSg SINE Alu -8 302 10 790 165 31 0 chr4 168928201 168928328 -33400019 + FLAM_A SINE Alu 1 131 -2 1057 222 124 0 chr4 168928506 168928772 -33399575 - MLT1A1 LTR MaLR 0 365 67 1212 113 94 25 chr4 168928772 168928975 -33399372 - MER46A DNA MER2_type -7 229 13 255 196 0 20 chr4 168928983 168929034 -33399313 - MLT1A1 LTR MaLR -300 74 25 761 205 36 0 chr4 168929146 168929312 -33399035 - L1 LINE L1 -913 5233 5062 1165 187 5 5 chr4 168929315 168929547 -33398800 - AluJb SINE Alu 0 315 84 882 133 0 0 chr4 168929560 168929695 -33398652 - L1 LINE L1 -1096 5050 4916 2070 130 7 0 chr4 168929696 168929988 -33398359 - AluSx SINE Alu -17 295 2 1713 144 0 4 chr4 168929988 168930251 -33398096 - L1 LINE L1 -1810 4336 4075 1699 233 44 4 chr4 168930253 168930708 -33397639 - L1M4 LINE L1 -820 5326 4854 724 340 13 0 chr4 168930832 168931064 -33397283 + MIR SINE MIR 12 246 -16 387 314 0 12 chr4 168931735 168931904 -33396443 + (CA)n Simple_repeat Simple_repeat 1 167 0 223 313 89 18 chr4 168931972 168932084 -33396263 - MIR SINE MIR -110 152 33 2127 112 11 0 chr4 168932597 168932884 -33395463 - AluSc SINE Alu -19 290 1 227 297 16 0 chr4 168932897 168932961 -33395386 - MIR SINE MIR -186 76 12 379 283 26 9 chr4 168934209 168934322 -33394025 + MIR SINE MIR 148 262 0 751 270 106 4 chr4 168934640 168934866 -33393481 + MIR SINE MIR 12 260 -2 360 0 0 0 chr4 168934941 168934981 -33393366 + (CA)n Simple_repeat Simple_repeat 2 41 0 2148 116 10 3 chr4 168936064 168936358 -33391989 + AluSx SINE Alu 1 296 -16 2161 152 18 39 chr4 168936371 168936753 -33391594 + MLT1B LTR MaLR 1 374 -16 1405 167 62 127 chr4 168936753 168937089 -33391258 + MLT2D LTR ERVL 1 304 -110 2770 130 42 5 chr4 168937089 168937497 -33390850 - MSTB LTR MaLR -3 423 1 1405 167 62 127 chr4 168937497 168937592 -33390755 + MLT2D LTR ERVL 304 404 -10 442 218 67 109 chr4 168938178 168938343 -33390004 + MLT1E2 LTR MaLR 1 158 -468 2139 113 3 22 chr4 168938449 168938767 -33389580 + AluSx SINE Alu 1 312 0 1774 77 9 0 chr4 168938806 168939026 -33389321 + L1PA7 LINE L1 5933 6154 0 234 118 29 0 chr4 168939316 168939374 -33388973 + Alu SINE Alu 250 308 0 308 128 26 77 chr4 168939374 168939425 -33388922 + L1M LINE L1 5340 5387 -2421 1692 246 59 64 chr4 168939425 168940019 -33388328 + MLT1E LTR MaLR 1 591 -2 308 128 26 77 chr4 168940019 168940045 -33388302 + L1M LINE L1 5387 5413 -2395 2303 77 3 0 chr4 168940053 168940340 -33388007 + AluY SINE Alu 1 288 -23 21 0 0 0 chr4 168940340 168940361 -33387986 + AT_rich Low_complexity Low_complexity 1 21 0 362 283 53 0 chr4 168940897 168941010 -33387337 + L2 LINE L2 3194 3312 -1 2352 103 0 3 chr4 168941131 168941442 -33386905 - AluSg SINE Alu 0 310 1 1853 128 17 7 chr4 168941943 168942240 -33386107 + MSTB LTR MaLR 1 300 -126 535 29 143 0 chr4 168942543 168942613 -33385734 + MADE1 DNA Mariner 1 80 0 601 216 0 0 chr4 168942798 168942900 -33385447 + MER5B DNA MER1_type 1 102 -76 2095 102 3 14 chr4 168944179 168944473 -33383874 - AluSq SINE Alu -22 291 1 361 280 193 18 chr4 168944821 168945039 -33383308 + MIR SINE MIR 7 262 0 517 304 111 5 chr4 168945656 168945873 -33382474 - MIR SINE MIR -8 254 15 240 292 208 8 chr4 168946271 168946391 -33381956 + MIR3 SINE MIR 32 175 -33 311 356 20 0 chr4 168946454 168946555 -33381792 + MIR SINE MIR 1 103 -159 542 293 78 78 chr4 168946555 168946889 -33381458 - LTR16A LTR ERVL 0 450 117 362 336 13 13 chr4 168946945 168947094 -33381253 + MIR SINE MIR 98 246 -16 782 178 0 0 chr4 168947173 168947291 -33381056 - MER5A DNA MER1_type 0 189 72 1683 256 32 43 chr4 168947297 168947917 -33380430 - L1M3f LINE L1 -4159 1169 557 1152 317 59 38 chr4 168948005 168948718 -33379629 - L1M3a LINE L1 -5226 729 2 870 62 0 0 chr4 168948732 168948845 -33379502 + (TTCC)n Simple_repeat Simple_repeat 3 115 0 2157 74 0 23 chr4 168948845 168949144 -33379203 - AluY SINE Alu -19 292 1 351 196 0 36 chr4 168949145 168949257 -33379090 + CT-rich Low_complexity Low_complexity 3 110 0 1859 141 42 3 chr4 168949273 168949556 -33378791 - AluSx SINE Alu -18 294 1 442 192 0 0 chr4 168949559 168949632 -33378715 - MER5A DNA MER1_type -116 73 1 191 364 34 11 chr4 168949674 168949762 -33378585 - MIR SINE MIR -103 105 16 2245 114 0 0 chr4 168950322 168950628 -33377719 - AluSx SINE Alu -6 306 1 2635 51 0 0 chr4 168951034 168951345 -33377002 + AluY SINE Alu 1 311 0 738 186 99 12 chr4 168951510 168951671 -33376676 - MER45A DNA AcHobo -3 175 1 574 135 34 0 chr4 168951863 168951952 -33376395 - AluJb SINE Alu -20 292 201 2949 116 47 7 chr4 168952750 168953198 -33375149 - L1PA10 LINE L1 -2 6166 5701 1286 117 0 0 chr4 168953198 168953386 -33374961 + L1P4 LINE L1 5588 5775 -393 2233 103 3 10 chr4 168954506 168954807 -33373540 - AluSx SINE Alu -13 299 1 602 238 21 7 chr4 168954829 168954972 -33373375 + L1ME2 LINE L1 5942 6086 -78 658 321 4 15 chr4 168954980 168955242 -33373105 - L1ME LINE L1 -4577 1684 1426 5436 174 33 23 chr4 168955253 168955532 -33372815 + L1PA16 LINE L1 4106 4381 -1785 1621 196 7 7 chr4 168955532 168955833 -33372514 + AluJo SINE Alu 5 305 -7 5436 174 33 23 chr4 168955833 168956052 -33372295 + L1PA16 LINE L1 4381 4596 -1570 2238 121 0 6 chr4 168956052 168956366 -33371981 - AluSx SINE Alu 0 312 1 2021 137 0 3 chr4 168956376 168956661 -33371686 - AluSx SINE Alu -27 285 2 5436 174 33 23 chr4 168956661 168958191 -33370156 + L1PA16 LINE L1 4604 6163 -3 1509 276 107 61 chr4 168958396 168958823 -33369524 - L1ME LINE L1 -4727 1353 947 1788 166 20 7 chr4 168958823 168959119 -33369228 - AluJb SINE Alu -12 300 1 1509 276 107 61 chr4 168959119 168959130 -33369217 - L1ME LINE L1 -5133 947 938 1908 139 3 7 chr4 168959130 168959417 -33368930 - AluSx SINE Alu -16 296 11 1509 276 107 61 chr4 168959417 168960244 -33368103 - L1ME LINE L1 -5142 938 47 232 211 35 0 chr4 168960478 168960535 -33367812 + LTR30 LTR ERV1 556 614 -108 404 204 16 76 chr4 168960544 168960574 -33367773 + LTR12 LTR ERV1 352 382 -332 1718 55 0 37 chr4 168960574 168960792 -33367555 - AluY SINE Alu -44 267 58 404 204 16 76 chr4 168960792 168960895 -33367452 + LTR12 LTR ERV1 382 581 -133 211 250 0 0 chr4 168961007 168961051 -33367296 + L2 LINE L2 3229 3272 0 1627 259 67 33 chr4 168961931 168961996 -33366351 + MLT1F1 LTR MaLR 1 62 -505 1542 126 97 8 chr4 168961996 168962234 -33366113 - AluSx SINE Alu -53 259 1 1627 259 67 33 chr4 168962234 168962690 -33365657 + MLT1F1 LTR MaLR 62 540 -27 399 41 0 0 chr4 168962690 168962739 -33365608 + (TG)n Simple_repeat Simple_repeat 2 50 0 1666 143 7 53 chr4 168962739 168963039 -33365308 - AluJo SINE Alu -26 286 1 790 165 31 0 chr4 168965024 168965151 -33363196 + FLAM_A SINE Alu 1 131 -2 1035 213 130 0 chr4 168965341 168965595 -33362752 - MLT1A1 LTR MaLR -12 353 67 1230 130 88 23 chr4 168965595 168965810 -33362537 - MER46A DNA MER2_type -7 229 1 330 167 0 56 chr4 168965812 168965884 -33362463 - MLT1A1 LTR MaLR -306 68 1 805 136 8 0 chr4 168967164 168967289 -33361058 + MIR SINE MIR 9 134 -128 253 214 186 0 chr4 168967438 168967508 -33360839 + MIR3 SINE MIR 120 202 -6 423 0 0 0 chr4 168968758 168968805 -33359542 + (CA)n Simple_repeat Simple_repeat 2 48 0 212 196 0 20 chr4 168969061 168969112 -33359235 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 2291 85 3 3 chr4 168971012 168971305 -33357042 - AluSq SINE Alu -20 293 1 555 340 120 37 chr4 168971408 168971925 -33356422 - L3 LINE CR1 -27 1550 991 1599 189 120 17 chr4 168973218 168973577 -33354770 + MSTD LTR MaLR 1 396 0 1340 230 24 29 chr4 168973579 168973962 -33354385 + MSTD-int LTR MaLR 2 382 -1353 21 0 0 0 chr4 168973991 168974012 -33354335 + AT_rich Low_complexity Low_complexity 1 21 0 353 167 39 0 chr4 168974158 168974236 -33354111 + MSTD LTR MaLR 314 394 -2 1340 230 24 29 chr4 168974240 168974623 -33353724 + MSTD-int LTR MaLR 2 382 -1353 5183 188 29 6 chr4 168974639 168975650 -33352697 + MSTD-int LTR MaLR 25 1058 -593 439 169 0 0 chr4 168975650 168975727 -33352620 - MSTB LTR MaLR -345 81 5 5267 235 44 27 chr4 168975729 168977074 -33351273 + MSTD-int LTR MaLR 362 1729 -6 893 195 10 49 chr4 168977156 168977324 -33351023 + MSTD LTR MaLR 200 360 -36 1194 176 0 0 chr4 168977324 168977528 -33350819 - MER6B DNA MER2_type -4 206 3 893 195 10 49 chr4 168977528 168977564 -33350783 + MSTD LTR MaLR 360 396 0 477 285 36 15 chr4 168977881 168978018 -33350329 + MLT1H LTR MaLR 217 356 -193 677 226 0 15 chr4 168978041 168978174 -33350173 + FLAM_A SINE Alu 2 132 -1 467 252 63 123 chr4 168978762 168979095 -33349252 + MER102b DNA MER1_type 27 339 -2 201 246 49 33 chr4 168979097 168979158 -33349189 - MIR3 SINE MIR -48 160 99 1136 168 0 0 chr4 168980409 168980588 -33347759 + AluJb SINE Alu 134 312 0 301 392 56 58 chr4 168980647 168981109 -33347238 + L2 LINE L2 2812 3272 0 189 0 0 0 chr4 168982023 168982044 -33346303 + (TG)n Simple_repeat Simple_repeat 2 22 0 240 291 13 0 chr4 168982564 168982643 -33345704 + MIR SINE MIR 183 262 0 199 318 16 0 chr4 168982885 168982948 -33345399 - MIR SINE MIR -24 238 175 377 336 84 5 chr4 168983018 168983232 -33345115 - MIR SINE MIR -12 250 20 212 301 281 7 chr4 168983923 168984076 -33344271 + MIR SINE MIR 56 250 -12 1136 254 79 125 chr4 168984992 168985439 -33342908 + L2 LINE L2 1997 2400 -914 876 220 12 0 chr4 168985439 168985607 -33342740 - FAM SINE Alu -5 170 1 1136 254 79 125 chr4 168985607 168985880 -33342467 + L2 LINE L2 2400 2684 -630 901 248 69 8 chr4 168986096 168986342 -33342005 - MIR SINE MIR 0 262 2 329 220 34 42 chr4 168987617 168987735 -33340612 - L1MC4 LINE L1 -1 8041 7925 749 166 35 87 chr4 168990383 168990545 -33337802 - U3 snRNA snRNA 0 217 69 2085 169 0 0 chr4 168990545 168990882 -33337465 - MER1B DNA MER1_type 0 337 1 749 166 35 87 chr4 168990882 168990948 -33337399 - U3 snRNA snRNA -148 69 1 495 335 54 13 chr4 168992759 168992998 -33335349 + LTR16A LTR ERVL 1 249 -201 257 315 147 0 chr4 168993031 168993215 -33335132 + MERVL LTR ERVL 3298 3508 -1977 907 313 49 78 chr4 168993582 168993871 -33334476 + MERVL LTR ERVL 3996 4292 -1472 237 33 0 0 chr4 168993871 168993901 -33334446 + (TC)n Simple_repeat Simple_repeat 2 31 0 2362 97 3 0 chr4 168993901 168994209 -33334138 - AluSq SINE Alu -4 309 1 907 313 49 78 chr4 168994209 168994615 -33333732 + MERVL LTR ERVL 4290 4672 -1092 428 221 103 78 chr4 168994856 168994979 -33333368 - MLT1E LTR MaLR -267 275 157 2189 130 0 6 chr4 168994979 168995294 -33333053 - AluSq SINE Alu 0 313 1 428 221 103 78 chr4 168995294 168995454 -33332893 - MLT1E LTR MaLR -385 157 1 425 267 90 63 chr4 168995454 168995709 -33332638 - MLT1E-int LTR MaLR 0 1371 1110 5061 89 12 19 chr4 168996337 168997071 -33331276 - L1PA11 LINE L1 -2 6172 5444 1834 179 63 28 chr4 168997071 168997582 -33330765 - MLT2A2 LTR ERVL -1 553 3 1576 88 13 33 chr4 168997582 168997710 -33330637 - L1P4 LINE L1 -717 5451 5322 2324 88 10 0 chr4 168997710 168998006 -33330341 - AluY SINE Alu -12 299 1 1576 88 13 33 chr4 168998006 168998236 -33330111 - L1P4 LINE L1 -846 5322 5098 189 0 0 0 chr4 168998298 168998319 -33330028 + (A)n Simple_repeat Simple_repeat 1 21 0 2773 144 16 8 chr4 168998959 168999460 -33328887 - L1MB3 LINE L1 -7 6176 5672 914 274 49 72 chr4 168999559 169000070 -33328277 - LTR33 LTR ERVL 0 521 23 216 0 0 0 chr4 169000784 169000808 -33327539 + (T)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr4 169001518 169001539 -33326808 + AT_rich Low_complexity Low_complexity 1 21 0 2261 116 0 0 chr4 169001546 169001849 -33326498 + AluSx SINE Alu 3 305 -7 199 314 124 0 chr4 169002197 169002302 -33326045 + L2 LINE L2 2890 3007 -265 474 290 97 37 chr4 169002366 169002666 -33325681 - MLT1I LTR MaLR -7 402 85 583 289 62 58 chr4 169002692 169002952 -33325395 + MIR SINE MIR 2 262 0 648 282 34 38 chr4 169004788 169005050 -33323297 - MIR SINE MIR -1 261 1 1521 169 68 27 chr4 169005249 169005545 -33322802 - AluJo SINE Alu -4 308 1 1993 96 44 0 chr4 169005875 169006145 -33322202 + AluSq SINE Alu 8 289 -24 189 0 0 0 chr4 169006677 169006698 -33321649 + (T)n Simple_repeat Simple_repeat 1 21 0 1896 149 165 5 chr4 169007058 169007427 -33320920 - MSTA LTR MaLR 0 428 1 6473 171 169 8 chr4 169007427 169008849 -33319498 - MSTA-int LTR MaLR 0 1651 2 2058 142 153 5 chr4 169008850 169009223 -33319124 - MSTA LTR MaLR 0 428 1 743 297 48 17 chr4 169009291 169009728 -33318619 - L1ME4a LINE L1 -273 5848 5386 3063 158 52 78 chr4 169009810 169010383 -33317964 - MER44D DNA MER2_type -1884 703 151 2179 106 3 10 chr4 169010383 169010686 -33317661 + AluSg SINE Alu 1 301 -9 3063 158 52 78 chr4 169010686 169010826 -33317521 - MER44D DNA MER2_type -2436 151 9 506 276 35 0 chr4 169011039 169011184 -33317163 + MIR SINE MIR 111 260 -2 362 215 43 0 chr4 169011363 169011456 -33316891 - MER34 LTR ERV1 0 542 446 685 200 7 48 chr4 169011456 169011601 -33316746 - AluJb SINE Alu -43 269 131 252 268 0 0 chr4 169011606 169011662 -33316685 - MER34 LTR ERV1 -114 428 373 1056 196 141 40 chr4 169011662 169012009 -33316338 - LTR49-int LTR ERV1 -3672 1264 883 465 215 50 105 chr4 169012661 169012880 -33315467 - LTR49-int LTR ERV1 -4748 1583 1377 278 125 18 0 chr4 169013072 169013128 -33315219 - LTR49-int LTR ERV1 -4955 1376 1320 822 221 88 74 chr4 169013394 169013836 -33314511 - MER39 LTR ERV1 -2 636 135 2417 99 69 32 chr4 169016134 169016568 -33311779 + LTR7 LTR ERV1 1 450 0 420 279 168 10 chr4 169016749 169016957 -33311390 + MIR SINE MIR 11 251 -11 924 229 13 31 chr4 169016975 169017202 -33311145 + MIR SINE MIR 38 260 -2 1324 193 45 3 chr4 169017997 169018308 -33310039 - MER33 DNA MER1_type 0 324 1 1454 191 75 26 chr4 169021232 169021578 -33306769 - MLT1A1 LTR MaLR -2 363 1 189 0 0 0 chr4 169021669 169021690 -33306657 + (T)n Simple_repeat Simple_repeat 1 21 0 2320 88 7 0 chr4 169021806 169022101 -33306246 - AluSp SINE Alu -16 297 1 183 153 14 42 chr4 169022251 169022323 -33306024 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 480 312 54 50 chr4 169022324 169022808 -33305539 - L1MC/D LINE L1 -2003 5805 5320 315 300 88 40 chr4 169022814 169023087 -33305260 - L1MC/D LINE L1 -833 5313 5028 2691 148 40 11 chr4 169026082 169026536 -33301811 + LTR24 LTR ERV1 1 467 0 356 237 0 32 chr4 169026694 169026787 -33301560 + L1MC4 LINE L1 6614 6703 -1339 195 129 0 0 chr4 169026787 169026818 -33301529 + (TATATG)n Simple_repeat Simple_repeat 3 33 0 267 253 13 13 chr4 169026906 169026981 -33301366 + MLT1K LTR MaLR 514 588 0 296 189 253 11 chr4 169027219 169027314 -33301033 + MER34 LTR ERV1 5 122 -420 2097 81 0 11 chr4 169027369 169027652 -33300695 + AluY SINE Alu 1 280 -31 24 0 0 0 chr4 169027652 169027676 -33300671 + AT_rich Low_complexity Low_complexity 1 24 0 883 224 67 76 chr4 169027677 169028034 -33300313 + MER39 LTR ERV1 331 684 -23 3171 174 84 5 chr4 169028080 169028701 -33299646 + LTR51 LTR ERV1 1 670 -1 7185 105 2 10 chr4 169029980 169031111 -33297236 + L1P LINE L1 1844 2965 -3181 6988 31 0 2 chr4 169031212 169032041 -33296306 + L1PA5 LINE L1 5326 6152 -2 1427 78 5 0 chr4 169032045 169032251 -33296096 + LTR19A LTR ERV1 280 486 0 13402 98 14 1 chr4 169032745 169035484 -33292863 - L1PA7 LINE L1 -8 6461 3702 11452 110 18 27 chr4 169035584 169037651 -33290696 - L1PA7 LINE L1 -4376 2085 10 2182 126 3 7 chr4 169037719 169038029 -33290318 + AluSq SINE Alu 1 309 -4 192 322 0 0 chr4 169038029 169038088 -33290259 + L3b LINE CR1 1438 1496 -87 2252 101 7 0 chr4 169038493 169038789 -33289558 + AluSx SINE Alu 1 298 -14 458 187 245 7 chr4 169040081 169040236 -33288111 + MER67C LTR ERV1 145 336 -374 515 286 85 20 chr4 169040387 169040586 -33287761 - MIR SINE MIR -48 214 3 380 317 96 15 chr4 169040760 169040959 -33287388 + MIR SINE MIR 45 259 -3 2321 106 42 33 chr4 169041173 169041533 -33286814 - THE1B LTR MaLR 0 364 2 1738 167 38 3 chr4 169041676 169041964 -33286383 - AluSx SINE Alu -10 302 5 262 214 12 107 chr4 169042494 169042578 -33285769 + MER5A DNA MER1_type 106 181 -8 782 221 119 47 chr4 169042692 169042945 -33285402 - MLT2B1 LTR ERVL -57 463 193 318 94 19 0 chr4 169042918 169042971 -33285376 + MSTC LTR MaLR 375 428 0 * 1916 127 4 0 chr4 169043015 169043274 -33285073 - AluSg SINE Alu -14 296 37 282 87 0 0 chr4 169044275 169044321 -33284026 + (GA)n Simple_repeat Simple_repeat 1 46 0 2234 132 102 13 chr4 169044345 169044738 -33283609 + MSTA LTR MaLR 1 428 0 2306 71 44 0 chr4 169045139 169045436 -33282911 - AluY SINE Alu -1 310 1 842 280 16 20 chr4 169046382 169046632 -33281715 - MIR SINE MIR -2 260 12 236 376 0 20 chr4 169047349 169047450 -33280897 - MER5A DNA MER1_type 0 189 91 436 255 229 11 chr4 169047987 169048175 -33280172 + MIR SINE MIR 1 229 -33 622 206 26 98 chr4 169048314 169048366 -33279981 + MER31B LTR ERV1 1 55 -411 2234 123 3 0 chr4 169048366 169048675 -33279672 - AluSx SINE Alu -2 310 1 622 206 26 98 chr4 169048675 169049033 -33279314 + MER31B LTR ERV1 55 463 -3 4667 30 6 6 chr4 169049274 169049798 -33278549 + SVA Other Other 863 1386 0 2101 114 0 3 chr4 169050443 169050733 -33277614 + AluY SINE Alu 1 289 -22 642 259 35 7 chr4 169050936 169051079 -33277268 - MIR3 SINE MIR -46 162 16 225 0 0 0 chr4 169051527 169051552 -33276795 + (GA)n Simple_repeat Simple_repeat 1 25 0 216 0 0 0 chr4 169051551 169051575 -33276772 + (TG)n Simple_repeat Simple_repeat 2 25 0 * 4745 143 49 15 chr4 169051595 169052538 -33275809 - L1MA7 LINE L1 0 6877 5903 * 37774 72 6 8 chr4 169052533 169058677 -33269670 - L1PA5 LINE L1 -5 6149 22 2369 183 21 6 chr4 169058674 169059198 -33269149 - L1MA7 LINE L1 -813 5919 5388 * 4872 262 56 22 chr4 169059191 169061832 -33266515 - L1MA7 LINE L1 -3373 3359 935 361 265 0 12 chr4 169061866 169061949 -33266398 - L1MA7 LINE L1 -6294 359 278 279 181 42 28 chr4 169062087 169062159 -33266188 - L1MA7 LINE L1 -6283 370 298 2274 169 11 38 chr4 169062159 169062633 -33265714 + L1PA16 LINE L1 5690 6150 -16 278 193 18 18 chr4 169062918 169062975 -33265372 - L1MA7 LINE L1 -6319 334 278 266 284 0 15 chr4 169063015 169063082 -33265265 - L1MA7 LINE L1 -6309 344 279 312 91 0 0 chr4 169063156 169063200 -33265147 + (TG)n Simple_repeat Simple_repeat 2 45 0 353 387 71 0 chr4 169063868 169064036 -33264311 - MIR3 SINE MIR -13 195 16 323 127 0 101 chr4 169065356 169065435 -33262912 - L1PA16 LINE L1 -7 6159 6089 650 134 9 0 chr4 169066263 169066375 -33261972 - L1MB1 LINE L1 -4 6164 6052 207 253 40 27 chr4 169066978 169067053 -33261294 - L2 LINE L2 -1 3271 3196 1417 249 59 58 chr4 169067272 169068068 -33260279 - L2 LINE L2 -4 3309 2504 1697 178 149 85 chr4 169068249 169068953 -33259394 - LTR1B LTR ERV1 -81 745 8 284 277 60 0 chr4 169069700 169069783 -33258564 - L2 LINE L2 0 3272 3185 880 350 41 2 chr4 169070264 169070731 -33257616 - HERV16 LTR ERVL -1258 4396 3953 1269 205 152 31 chr4 169070866 169071247 -33257100 - MSTB1 LTR MaLR -5 427 1 281 222 42 0 chr4 169071248 169071320 -33257027 - HERV16 LTR ERVL -1728 3926 3852 918 340 32 22 chr4 169071568 169072206 -33256141 - HERV16 LTR ERVL -2777 2219 1688 536 328 78 31 chr4 169072616 169072976 -33255371 - HERV16 LTR ERVL -3826 1170 794 346 336 100 5 chr4 169073495 169073715 -33254632 - HERV16 LTR ERVL -4754 242 2 426 306 111 43 chr4 169073730 169074125 -33254222 - LTR16C LTR ERVL -15 476 55 2403 76 0 25 chr4 169074448 169074765 -33253582 - AluY SINE Alu -2 309 1 2290 167 13 10 chr4 169074858 169075253 -33253094 - MSTD LTR MaLR 0 396 1 29 0 0 0 chr4 169075275 169075304 -33253043 + AT_rich Low_complexity Low_complexity 1 29 0 1030 266 124 84 chr4 169075353 169076142 -33252205 - L2 LINE L2 -2 3311 2486 435 305 64 34 chr4 169078037 169078273 -33250074 + MIR SINE MIR 9 251 -11 264 238 57 19 chr4 169078625 169078730 -33249617 - L1ME4a LINE L1 -207 5914 5806 407 276 97 24 chr4 169078961 169079101 -33249246 - L1ME4a LINE L1 -459 5662 5640 2419 93 0 0 chr4 169079101 169079412 -33248935 - AluY SINE Alu 0 311 1 407 276 97 24 chr4 169079412 169079579 -33248768 - L1ME4a LINE L1 -481 5640 5487 2435 181 16 83 chr4 169081155 169081736 -33246611 - MLT2B3 LTR ERVL -12 542 1 5249 108 16 4 chr4 169081754 169082556 -33245791 - MER4D LTR ERV1 -91 812 1 9798 167 17 30 chr4 169082557 169083994 -33244353 - HERV16 LTR ERVL -432 5332 3923 4210 117 11 59 chr4 169083994 169084720 -33243627 - LTR8 LTR ERV1 0 691 1 9798 167 17 30 chr4 169084720 169085185 -33243162 - HERV16 LTR ERVL -1841 3923 3454 262 100 33 0 chr4 169085217 169085277 -33243070 + (TA)n Simple_repeat Simple_repeat 2 63 0 474 186 39 39 chr4 169085280 169085382 -33242965 - MLT2B3 LTR ERVL -38 516 381 877 140 0 20 chr4 169085382 169085532 -33242815 + THE1B LTR MaLR 1 147 -217 1519 174 8 0 chr4 169085632 169085896 -33242451 + THE1B LTR MaLR 99 364 0 1653 223 43 21 chr4 169085896 169086272 -33242075 - MLT2B3 LTR ERVL -123 431 48 432 183 231 0 chr4 169086274 169086378 -33241969 - MLT2B3 LTR ERVL -426 128 1 301 231 0 0 chr4 169086496 169086561 -33241786 - MLT1A1 LTR MaLR 0 365 301 183 314 149 8 chr4 169087672 169087793 -33240554 - MIR SINE MIR -115 147 10 2040 102 0 41 chr4 169088232 169088548 -33239799 - AluSc SINE Alu 0 308 5 328 253 32 0 chr4 169088752 169088847 -33239500 - L1MC4 LINE L1 0 8042 7945 20162 147 12 7 chr4 169091615 169096191 -33232156 - L1PA11 LINE L1 0 6174 1568 21 0 0 0 chr4 169097004 169097025 -33231322 + AT_rich Low_complexity Low_complexity 1 21 0 3315 84 32 0 chr4 169100499 169100938 -33227409 - MLT2A2 LTR ERVL 0 453 1 2111 117 10 13 chr4 169101244 169101544 -33226803 - AluSg SINE Alu -7 303 5 662 225 47 6 chr4 169101909 169102078 -33226269 - L1MCa LINE L1 -6217 209 34 6379 156 28 38 chr4 169102139 169102991 -33225356 - L1MA4 LINE L1 -3 6297 5438 1942 146 0 26 chr4 169102991 169103293 -33225054 - AluSx SINE Alu -18 294 1 6379 156 28 38 chr4 169103293 169103316 -33225031 - L1MA4 LINE L1 -862 5438 5416 1548 201 25 3 chr4 169103316 169103483 -33224864 - AluJo SINE Alu -22 290 113 288 0 0 0 chr4 169103483 169103515 -33224832 + (TG)n Simple_repeat Simple_repeat 1 32 0 1548 201 25 3 chr4 169103515 169103631 -33224716 - AluJo SINE Alu -199 113 1 6379 156 28 38 chr4 169103631 169104947 -33223400 - L1MA4 LINE L1 -884 5416 3991 2134 240 95 41 chr4 169104930 169105141 -33223206 - L1MC4 LINE L1 -328 7714 7516 * 2143 132 0 7 chr4 169105141 169105451 -33222896 - AluSx SINE Alu -4 308 1 2134 240 95 41 chr4 169105451 169106135 -33222212 - L1MC4 LINE L1 -526 7516 6771 219 213 0 0 chr4 169106153 169106186 -33222161 + (TATATG)n Simple_repeat Simple_repeat 6 41 -11 207 0 0 0 chr4 169106186 169106209 -33222138 + (CA)n Simple_repeat Simple_repeat 2 24 0 219 213 0 0 chr4 169106209 169106222 -33222125 + (TATATG)n Simple_repeat Simple_repeat 40 52 0 377 376 41 6 chr4 169106323 169106493 -33221854 - MIR3 SINE MIR -14 194 19 282 365 68 14 chr4 169107202 169107350 -33220997 + L2 LINE L2 3113 3268 -4 2311 97 7 0 chr4 169108598 169108896 -33219451 - AluSp SINE Alu -12 301 2 2386 97 7 3 chr4 169109210 169109520 -33218827 + AluSp SINE Alu 1 311 -2 23 33 0 0 chr4 169109971 169110001 -33218346 + AT_rich Low_complexity Low_complexity 1 30 0 566 246 166 15 chr4 169110741 169110940 -33217407 - MER67D LTR ERV1 -4 510 282 38850 68 3 2 chr4 169111056 169116406 -33211941 - L1P LINE L1 -777 5369 12 1021 154 27 23 chr4 169116416 169116636 -33211711 - LTR19A LTR ERV1 -265 221 1 250 128 0 0 chr4 169116761 169116800 -33211547 + MLT1K LTR MaLR 182 220 -368 24 0 0 0 chr4 169117089 169117113 -33211234 + AT_rich Low_complexity Low_complexity 1 24 0 209 341 24 12 chr4 169117284 169117369 -33210978 + L2 LINE L2 2899 2984 -329 1307 115 0 0 chr4 169117382 169117564 -33210783 - AluSg/x SINE Alu -1 311 130 383 272 115 47 chr4 169117576 169117767 -33210580 + L2 LINE L2 3016 3219 -94 2582 197 34 6 chr4 169117807 169118336 -33210011 - LTR35 LTR ERV1 -2 616 73 24 32 0 0 chr4 169118416 169118447 -33209900 + AT_rich Low_complexity Low_complexity 1 31 0 2493 129 27 52 chr4 169118875 169119481 -33208866 - MER4B LTR ERV1 0 779 1 27 29 0 0 chr4 169119588 169119622 -33208725 + AT_rich Low_complexity Low_complexity 1 34 0 261 0 0 0 chr4 169119696 169119725 -33208622 + (TA)n Simple_repeat Simple_repeat 1 29 0 387 318 9 0 chr4 169120432 169120542 -33207805 - L2 LINE L2 -3 3310 3200 210 345 35 0 chr4 169121005 169121092 -33207255 + L3b LINE CR1 1315 1404 -179 1455 117 27 0 chr4 169121117 169121340 -33207007 + MER31A LTR ERV1 9 237 -248 2027 196 114 72 chr4 169121346 169121763 -33206584 - LTR19C LTR ERV1 0 779 307 2264 98 0 19 chr4 169121763 169122078 -33206269 - AluSc SINE Alu 0 309 1 2027 196 114 72 chr4 169122078 169122396 -33205951 - LTR19C LTR ERV1 -472 307 4 1125 181 4 32 chr4 169122402 169122650 -33205697 + MER31A LTR ERV1 245 485 0 455 359 14 29 chr4 169122947 169123156 -33205191 + L2 LINE L2 2552 2757 -557 642 319 106 4 chr4 169123800 169124035 -33204312 + MIR SINE MIR 4 262 0 11768 260 40 44 chr4 169124235 169126307 -33202040 - L1 LINE L1 -779 6327 4250 1929 164 3 7 chr4 169126307 169126617 -33201730 - AluJb SINE Alu -2 310 2 11768 260 40 44 chr4 169126617 169128040 -33200307 - L1 LINE L1 -2856 4250 2824 1522 196 18 4 chr4 169128040 169128321 -33200026 - AluJb SINE Alu -27 285 1 11768 260 40 44 chr4 169128321 169130187 -33198160 - L1 LINE L1 -4282 2824 891 549 176 0 20 chr4 169130182 169130284 -33198063 - L1 LINE L1 -6921 109 10 * 327 317 70 45 chr4 169130410 169130609 -33197738 - L1ME1 LINE L1 -5 6230 6027 2268 193 17 5 chr4 169130609 169131028 -33197319 + MSTB LTR MaLR 3 426 0 2971 245 70 15 chr4 169131028 169132783 -33195564 - L1ME1 LINE L1 -202 6033 4181 1201 299 63 31 chr4 169132852 169133502 -33194845 - L1ME1 LINE L1 -5703 693 23 367 309 55 55 chr4 169133676 169133932 -33194415 - MLT1K LTR MaLR -162 426 171 182 37 37 0 chr4 169134105 169134132 -33194215 + (TTA)n Simple_repeat Simple_repeat 3 30 0 6538 72 15 5 chr4 169134132 169135062 -33193285 - L1PA7 LINE L1 -18 6136 5197 1981 156 0 0 chr4 169135069 169135358 -33192989 - AluSx SINE Alu -23 289 1 2007 237 39 37 chr4 169135366 169135928 -33192419 - MLT1F1 LTR MaLR -4 563 1 813 238 11 11 chr4 169136972 169137161 -33191186 - MER5A DNA MER1_type 0 189 1 312 303 118 7 chr4 169137177 169137329 -33191018 - L1MC4a LINE L1 -1917 5891 5723 1720 105 13 0 chr4 169137728 169137967 -33190380 - AluSp SINE Alu -71 242 1 697 230 72 103 chr4 169138118 169138449 -33189898 + L1MCc LINE L1 959 1279 -5144 922 252 84 38 chr4 169138534 169138687 -33189660 - L1MDa LINE L1 -3411 3129 2985 2699 164 22 69 chr4 169138687 169139268 -33189079 + MLT2B3 LTR ERVL 1 554 0 922 252 84 38 chr4 169139268 169139359 -33188988 - L1MDa LINE L1 -3555 2985 2900 3564 144 55 18 chr4 169139359 169140075 -33188272 - L1MA8 LINE L1 -3 6288 5547 922 252 84 38 chr4 169140075 169140306 -33188041 - L1MDa LINE L1 -3640 2900 2631 30 0 0 0 chr4 169140334 169140364 -33187983 + AT_rich Low_complexity Low_complexity 1 30 0 3375 151 2 10 chr4 169140368 169140966 -33187381 - L1PA15 LINE L1 -22 6143 5551 537 175 56 0 chr4 169140962 169141088 -33187259 - L1MDa LINE L1 -3893 2647 2515 * 2051 128 23 47 chr4 169141088 169141114 -33187233 + THE1C LTR MaLR 1 26 -349 2062 133 51 20 chr4 169141114 169141466 -33186881 - THE1B LTR MaLR 0 364 2 2051 128 23 47 chr4 169141466 169141823 -33186524 + THE1C LTR MaLR 26 375 0 2819 195 52 12 chr4 169141823 169142568 -33185779 - L1MDa LINE L1 -4021 2519 1745 1684 162 52 41 chr4 169142573 169142937 -33185410 - THE1C LTR MaLR -7 368 1 8954 145 12 53 chr4 169142937 169143778 -33184569 - THE1C-int LTR MaLR 0 1580 837 2153 130 0 3 chr4 169143778 169144078 -33184269 - AluSg SINE Alu -9 301 3 8954 145 12 53 chr4 169144078 169144881 -33183466 - THE1C-int LTR MaLR -743 837 3 1705 146 56 61 chr4 169144883 169145260 -33183087 - THE1C LTR MaLR 0 375 1 2284 231 63 52 chr4 169145270 169146756 -33181591 - L1MDa LINE L1 -4798 1742 3 515 180 43 29 chr4 169146835 169146974 -33181373 + Charlie2 DNA MER1_type 2479 2619 -243 4405 151 44 9 chr4 169146997 169147813 -33180534 - L1MA4 LINE L1 -14 6286 5442 3567 229 62 26 chr4 169147815 169149401 -33178946 - L1M1 LINE L1 -5241 2324 20 427 226 90 6 chr4 169149404 169149581 -33178766 + Charlie2 DNA MER1_type 2663 2854 -8 544 297 55 36 chr4 169149588 169150283 -33178064 - L1ME LINE L1 -506 5656 4943 210 105 0 0 chr4 169150719 169150757 -33177590 + (TG)n Simple_repeat Simple_repeat 1 38 0 2348 198 122 28 chr4 169151174 169151877 -33176470 - LTR48 LTR ERV1 -12 775 7 27 73 0 0 chr4 169151982 169152037 -33176310 + AT_rich Low_complexity Low_complexity 1 55 0 1465 237 12 9 chr4 169152268 169152601 -33175746 + MER21B LTR ERV1 13 346 -517 24 32 0 0 chr4 169153370 169153401 -33174946 + AT_rich Low_complexity Low_complexity 1 31 0 366 220 20 88 chr4 169154786 169155051 -33173296 + MER5C DNA MER1_type 3 321 -3 1270 266 69 3 chr4 169156411 169156775 -33171572 - LTR16A LTR ERVL -10 440 53 296 24 24 0 chr4 169156787 169156828 -33171519 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 40603 36 22 1 chr4 169156828 169162837 -33165510 - L1PA3 LINE L1 -16 6139 4 1846 155 10 76 chr4 169162886 169163141 -33165206 + MLT1B LTR MaLR 1 221 -169 1906 122 12 66 chr4 169163141 169163461 -33164886 + AluSx SINE Alu 1 303 -9 1846 155 10 76 chr4 169163461 169163612 -33164735 + MLT1B LTR MaLR 221 380 -10 247 146 21 0 chr4 169164271 169164319 -33164028 + L2 LINE L2 3261 3309 -4 532 272 111 6 chr4 169164323 169164503 -33163844 - L2 LINE L2 -1001 2313 2115 444 127 0 13 chr4 169164797 169164876 -33163471 - L1PA2 LINE L1 -260 5895 5818 2509 27 0 0 chr4 169164876 169165155 -33163192 + L1PA3 LINE L1 5859 6150 -5 283 143 0 0 chr4 169166018 169166060 -33162287 + MIR SINE MIR 211 252 -10 659 168 9 0 chr4 169167551 169167664 -33160683 - Tigger3b DNA MER2_type 0 1231 1118 2817 69 0 0 chr4 169167665 169168029 -33160318 + THE1B LTR MaLR 1 364 0 * 4627 105 52 22 chr4 169168029 169168417 -33159930 - Tigger3b DNA MER2_type -1907 1121 746 1757 162 17 3 chr4 169168417 169168707 -33159640 - AluJb SINE Alu -18 294 1 4627 105 52 22 chr4 169168707 169169125 -33159222 - Tigger3b DNA MER2_type -2282 746 291 4647 158 31 20 chr4 169169125 169170369 -33157978 - MER52A LTR ERV1 0 1755 570 2373 218 56 52 chr4 169170469 169171163 -33157184 + HUERS-P2 LTR ERV1 2391 3087 -1 689 234 8 55 chr4 169171163 169171398 -33156949 + LTR1 LTR ERV1 1 224 -561 1043 188 102 90 chr4 169171419 169171915 -33156432 + LTR1B LTR ERV1 348 983 -37 572 272 78 0 chr4 169171996 169172187 -33156160 + MER21B LTR ERV1 607 812 -51 21 57 0 0 chr4 169173168 169173203 -33155144 + AT_rich Low_complexity Low_complexity 1 35 0 2499 48 0 3 chr4 169173946 169174255 -33154092 - AluY SINE Alu -3 308 1 516 275 67 7 chr4 169174305 169174454 -33153893 + MIR SINE MIR 16 173 -89 524 171 38 9 chr4 169174473 169174578 -33153769 - Tigger5 DNA MER2_type -1 2322 2215 304 219 14 14 chr4 169174614 169174687 -33153660 - Tigger5 DNA MER2_type 0 2323 2251 * 325 182 0 0 chr4 169174656 169174711 -33153636 - Tigger5 DNA MER2_type -2268 55 1 23 54 0 0 chr4 169175642 169175679 -33152668 + AT_rich Low_complexity Low_complexity 1 37 0 274 299 158 34 chr4 169175923 169176100 -33152247 + MIR SINE MIR 30 228 -34 3659 214 52 57 chr4 169176743 169177873 -33150474 + L1MC2 LINE L1 1 1205 -5359 1483 227 35 22 chr4 169177873 169178239 -33150108 + MLT1A2 LTR MaLR 4 374 0 3659 214 52 57 chr4 169178239 169178996 -33149351 + L1MC2 LINE L1 1205 1964 -4600 * 5054 199 58 25 chr4 169178993 169181241 -33147106 + L1MC2 LINE L1 4433 6753 -9 21 0 0 0 chr4 169181253 169181274 -33147073 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 169181992 169182013 -33146334 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr4 169183745 169183768 -33144579 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 225 0 0 0 chr4 169184548 169184573 -33143774 + (TG)n Simple_repeat Simple_repeat 2 26 0 1379 157 29 125 chr4 169184787 169185132 -33143215 - AluJo SINE Alu 0 312 1 290 200 0 0 chr4 169185488 169185538 -33142809 + MIR SINE MIR 108 157 -105 9103 206 72 9 chr4 169185546 169189463 -33138884 + L1MB3 LINE L1 19 4287 -2095 1390 157 106 4 chr4 169189463 169189718 -33138629 + MLT2A2 LTR ERVL 1 281 -172 746 361 15 103 chr4 169189718 169189981 -33138366 + THE1C LTR MaLR 136 375 0 3043 80 3 159 chr4 169189981 169190596 -33137751 + THE1C-int LTR MaLR 1 519 -1061 4033 201 53 30 chr4 169190840 169192010 -33136337 + L1MB3 LINE L1 5221 6417 -2 526 232 49 54 chr4 169193128 169193352 -33134995 - LTR55 LTR ERV -68 480 258 15255 151 61 12 chr4 169193378 169195987 -33132360 - L1PBa LINE L1 -4126 2737 3 8617 235 42 23 chr4 169195996 169199848 -33128499 - L1 LINE L1 -1223 6342 2022 236 388 61 0 chr4 169200480 169200578 -33127769 - MIR SINE MIR -156 106 3 23 33 0 0 chr4 169202457 169202487 -33125860 + AT_rich Low_complexity Low_complexity 1 30 0 706 228 0 80 chr4 169202649 169202873 -33125474 - MER52A LTR ERV1 -1549 206 1 1693 178 18 0 chr4 169202876 169203162 -33125185 - Tigger3(Golem) DNA MER2_type -2738 291 1 1243 188 9 4 chr4 169204336 169204772 -33123575 + MLT1D LTR MaLR 1 503 -2 190 420 11 0 chr4 169205110 169205198 -33123149 - L2 LINE L2 -195 3077 2989 1898 101 0 54 chr4 169205284 169205597 -33122750 + AluSx SINE Alu 24 321 0 2089 233 85 21 chr4 169206774 169207680 -33120667 - MER63C DNA MER1_type 0 931 57 259 358 128 11 chr4 169208488 169208667 -33119680 + MIR3 SINE MIR 3 202 -6 406 331 76 0 chr4 169209211 169209395 -33118952 - MIR SINE MIR 0 262 65 301 312 77 38 chr4 169209474 169209865 -33118482 - L1ME LINE L1 -303 5818 5397 880 232 62 111 chr4 169210189 169210257 -33118090 - MLT1E2 LTR MaLR 0 626 556 1779 91 0 0 chr4 169210257 169210498 -33117849 + AluSq SINE Alu 1 241 -72 880 232 62 111 chr4 169210498 169210514 -33117833 - MLT1E2 LTR MaLR -70 556 541 311 0 26 0 chr4 169210514 169210553 -33117794 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 880 232 62 111 chr4 169210553 169210872 -33117475 - MLT1E2 LTR MaLR -85 541 242 499 276 107 2 chr4 169210885 169211038 -33117309 - MIR SINE MIR -56 206 42 2348 65 3 0 chr4 169212704 169212995 -33115352 + AluY SINE Alu 1 292 -19 1722 127 165 70 chr4 169214288 169214657 -33113690 - MER4A LTR ERV1 0 664 261 518 114 91 0 chr4 169214657 169214745 -33113602 - MER4A LTR ERV1 -566 98 3 285 295 32 0 chr4 169215288 169215383 -33112964 + MIR SINE MIR 81 178 -84 335 287 190 42 chr4 169215436 169215580 -33112767 + MIR SINE MIR 3 124 -138 1733 118 55 116 chr4 169215580 169215978 -33112369 + THE1C LTR MaLR 2 375 0 335 287 190 42 chr4 169215978 169216049 -33112298 + MIR SINE MIR 124 250 -12 3333 77 73 4 chr4 169216331 169216827 -33111520 + L1PA13 LINE L1 5632 6161 -2 4479 161 52 12 chr4 169217374 169218202 -33110145 - MER6 DNA MER2_type -3 862 2 729 142 8 15 chr4 169218591 169218725 -33109622 - L1MA4 LINE L1 -6 6294 6162 26 30 0 0 chr4 169218909 169218942 -33109405 + AT_rich Low_complexity Low_complexity 1 33 0 2828 59 6 0 chr4 169218951 169219307 -33109040 - L1PA7 LINE L1 -2 6152 5795 443 336 0 7 chr4 169219327 169219473 -33108874 - LTR16A LTR ERVL -144 306 162 440 155 0 14 chr4 169219522 169219593 -33108754 - MSTB LTR MaLR -356 70 1 315 263 0 0 chr4 169219593 169219665 -33108682 + LTR16C LTR ERVL 420 491 0 292 250 16 0 chr4 169220932 169220996 -33107351 - L2 LINE L2 0 3313 3249 297 298 80 58 chr4 169221183 169221371 -33106976 - MIR SINE MIR -56 206 15 25 31 0 0 chr4 169221384 169221416 -33106931 + AT_rich Low_complexity Low_complexity 1 32 0 2556 227 134 6 chr4 169222551 169223208 -33105139 - L1MD2 LINE L1 -16 6343 5603 998 216 80 78 chr4 169223215 169223614 -33104733 + MER57A LTR ERV1 4 403 0 270 105 0 0 chr4 169223623 169223661 -33104686 - L1MD2 LINE L1 -761 5598 5561 2245 95 3 0 chr4 169223792 169224087 -33104260 + AluSg SINE Alu 1 296 -14 266 284 21 11 chr4 169224363 169224458 -33103889 - MER69 DNA AcHobo 0 2526 2431 2569 163 32 4 chr4 169224603 169225070 -33103277 + L1PA16 LINE L1 5684 6163 -3 509 280 33 42 chr4 169225178 169225392 -33102955 + MIR SINE MIR 51 262 0 246 349 114 0 chr4 169225636 169225768 -33102579 + L3 LINE CR1 532 678 -899 244 255 276 10 chr4 169225806 169225904 -33102443 + L2 LINE L2 3189 3312 -1 477 274 160 52 chr4 169226204 169226547 -33101800 + L3 LINE CR1 1072 1451 -126 186 313 62 12 chr4 169226669 169226749 -33101598 + L2 LINE L2 3008 3091 -222 2002 245 49 28 chr4 169226751 169227848 -33100499 - L1ME1 LINE L1 -5 6161 4843 22 20 8 0 chr4 169228341 169228412 -33099935 + AT_rich Low_complexity Low_complexity 1 29 0 353 270 22 44 chr4 169229955 169230092 -33098255 + L1MD2 LINE L1 5009 5142 -1004 46 19 0 0 chr4 169230092 169230145 -33098202 + AT_rich Low_complexity Low_complexity 1 53 0 3691 205 75 10 chr4 169230151 169231257 -33097090 + L1MD2 LINE L1 5135 6349 -10 1942 209 48 24 chr4 169231579 169231991 -33096356 + MER68 LTR ERV1 20 441 -121 646 132 0 12 chr4 169232255 169232421 -33095926 + L1PA16 LINE L1 5909 6163 -3 1044 163 6 12 chr4 169232486 169232658 -33095689 - FAM SINE Alu -4 171 1 208 0 62 0 chr4 169232886 169232918 -33095429 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 279 225 144 9 chr4 169232941 169233052 -33095295 - L2 LINE L2 -6 3307 3182 370 219 0 0 chr4 169233183 169233247 -33095100 + MER91B DNA MER1_type 19 82 -108 2717 26 0 0 chr4 169233260 169233570 -33094777 - AluY SINE Alu -1 310 1 718 270 22 11 chr4 169233723 169233901 -33094446 - MLT1J LTR MaLR -271 240 61 416 340 70 0 chr4 169234133 169234348 -33093999 - L3b LINE CR1 -246 1337 1108 201 39 0 0 chr4 169235026 169235052 -33093295 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 303 318 82 0 chr4 169235056 169235141 -33093206 - L2 LINE L2 -26 3287 3196 964 154 134 92 chr4 169236084 169236442 -33091905 - THE1C LTR MaLR 0 375 3 6251 155 13 13 chr4 169236444 169237495 -33090852 - THE1C-int LTR MaLR 0 1580 530 242 148 19 0 chr4 169237707 169237761 -33090586 + (TA)n Simple_repeat Simple_repeat 2 56 0 307 278 11 11 chr4 169237763 169237853 -33090494 + L1MC4 LINE L1 6614 6703 -1339 12206 184 24 4 chr4 169238156 169239850 -33088497 - L1PB1 LINE L1 -33 7078 5419 387 0 0 0 chr4 169239850 169239893 -33088454 + (TG)n Simple_repeat Simple_repeat 2 44 0 12206 184 24 4 chr4 169239893 169241737 -33086610 - L1PB1 LINE L1 -1692 5419 3470 375 105 0 0 chr4 169242375 169242432 -33085915 + (TG)n Simple_repeat Simple_repeat 2 58 0 236 299 104 55 chr4 169243029 169243193 -33085154 - MLT1H LTR MaLR -375 174 3 26 0 0 0 chr4 169243362 169243388 -33084959 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 169243771 169243792 -33084555 + AT_rich Low_complexity Low_complexity 1 21 0 2161 187 43 17 chr4 169244308 169244773 -33083574 - L1MA9 LINE L1 -377 6171 5695 372 194 48 0 chr4 169244780 169244904 -33083443 + (TA)n Simple_repeat Simple_repeat 1 130 0 450 143 29 0 chr4 169245094 169245199 -33083148 + (TA)n Simple_repeat Simple_repeat 1 108 0 773 194 8 86 chr4 169245202 169245383 -33082964 - L1MA9 LINE L1 -748 5634 5562 2042 140 0 0 chr4 169245383 169245698 -33082649 + AluSx SINE Alu 1 315 0 773 194 8 86 chr4 169245698 169245820 -33082527 - L1MA9 LINE L1 -820 5562 5432 1021 205 30 21 chr4 169245820 169246054 -33082293 - L1PB1 LINE L1 -4983 2047 1812 2505 227 20 59 chr4 169246056 169246770 -33081577 - L1PB1 LINE L1 -6338 692 7 678 221 25 0 chr4 169246783 169246946 -33081401 - L1MA9 LINE L1 -940 5442 5276 440 86 81 63 chr4 169246975 169247149 -33081198 + CT-rich Low_complexity Low_complexity 4 180 0 577 84 72 42 chr4 169247188 169247354 -33080993 + CT-rich Low_complexity Low_complexity 5 175 0 586 246 0 0 chr4 169247378 169247496 -33080851 - FLAM_A SINE Alu -12 121 4 9954 213 59 27 chr4 169247496 169248583 -33079764 - L1MA9 LINE L1 -1094 5288 4237 1572 158 112 0 chr4 169248583 169248723 -33079624 - AluJo SINE Alu -23 289 166 189 74 0 0 chr4 169248723 169248750 -33079597 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1572 158 112 0 chr4 169248750 169248869 -33079478 - AluJo SINE Alu -146 166 1 9954 213 59 27 chr4 169248869 169250171 -33078176 - L1MA9 LINE L1 -2145 4237 2764 3821 181 30 10 chr4 169250171 169250879 -33077468 - MER72 LTR ERV1 0 722 1 9954 213 59 27 chr4 169250879 169251644 -33076703 - L1MA9 LINE L1 -3618 2764 2025 4261 116 90 101 chr4 169251950 169253385 -33074962 + pTR5 LTR ERV1 69 2438 0 317 242 57 73 chr4 169253524 169253648 -33074699 - MIR SINE MIR -136 126 5 231 330 23 0 chr4 169254135 169254223 -33074124 - MIR3 SINE MIR -10 198 109 189 167 14 139 chr4 169254914 169254986 -33073361 + MIR SINE MIR 150 212 -50 409 332 140 37 chr4 169255028 169255612 -33072735 - L2 LINE L2 0 3313 2672 538 182 159 6 chr4 169255885 169256144 -33072203 + MLT1A1 LTR MaLR 1 383 -13 770 272 20 60 chr4 169256284 169256633 -33071714 + MER46C DNA MER2_type 2 336 -2 192 167 83 62 chr4 169256685 169256733 -33071614 + L2 LINE L2 3197 3245 -27 1836 133 52 4 chr4 169258537 169258807 -33069540 - AluSx SINE Alu -27 285 3 344 227 5 135 chr4 169259183 169259368 -33068979 - L2 LINE L2 -4 3309 3149 2963 191 64 5 chr4 169259470 169259935 -33068412 + L1MA10 LINE L1 5670 6183 -151 405 0 0 0 chr4 169259935 169259980 -33068367 + (CA)n Simple_repeat Simple_repeat 2 46 0 2963 191 64 5 chr4 169259980 169260138 -33068209 + L1MA10 LINE L1 6183 6330 -4 30 27 0 0 chr4 169260205 169260242 -33068105 + AT_rich Low_complexity Low_complexity 1 37 0 247 322 93 49 chr4 169261015 169261134 -33067213 + L2 LINE L2 3123 3254 -59 7987 78 6 9 chr4 169261134 169262209 -33066138 + MER11C LTR ERVK 1 1071 0 247 322 93 49 chr4 169262209 169262272 -33066075 + L2 LINE L2 3254 3313 0 465 260 136 18 chr4 169262354 169262417 -33065930 - MER5A DNA MER1_type 0 189 135 2038 99 43 20 chr4 169262417 169262721 -33065626 + AluY SINE Alu 1 311 0 465 260 136 18 chr4 169262721 169262826 -33065521 - MER5A DNA MER1_type -54 135 1 376 317 62 21 chr4 169264652 169264797 -33063550 - MER5B DNA MER1_type -27 151 1 1772 175 9 19 chr4 169264895 169265210 -33063137 - AluJo SINE Alu 0 312 1 225 180 0 0 chr4 169266103 169266153 -33062194 + (TA)n Simple_repeat Simple_repeat 1 50 0 2147 89 14 0 chr4 169266629 169266921 -33061426 - AluSc SINE Alu -13 296 1 29 28 0 0 chr4 169267949 169267985 -33060362 + AT_rich Low_complexity Low_complexity 1 36 0 316 355 58 21 chr4 169268355 169268544 -33059803 + MIR SINE MIR 1 196 -66 341 333 114 8 chr4 169268863 169268995 -33059352 + L2 LINE L2 3127 3272 0 1779 199 0 0 chr4 169271954 169272256 -33056091 - AluJo SINE Alu -8 304 3 539 304 27 0 chr4 169273057 169273205 -33055142 + MIR SINE MIR 24 175 -87 423 262 112 4 chr4 169273340 169273479 -33054868 - MLT1A2 LTR MaLR -214 151 1 334 313 21 10 chr4 169273961 169274057 -33054290 - L2 LINE L2 -5 3267 3171 268 361 74 20 chr4 169274064 169274266 -33054081 + L2 LINE L2 1850 2062 -1252 294 29 0 0 chr4 169274446 169274481 -33053866 + (TC)n Simple_repeat Simple_repeat 1 35 0 259 354 36 26 chr4 169274529 169274721 -33053626 + L2 LINE L2 2368 2561 -753 1098 263 71 23 chr4 169274909 169275263 -33053084 + MLT1A2 LTR MaLR 4 374 0 1955 120 8 48 chr4 169275743 169276094 -33052253 - MER1B DNA MER1_type 0 337 1 42068 36 27 2 chr4 169276782 169282778 -33045569 + L1PA3 LINE L1 2 6151 -4 280 289 11 33 chr4 169285245 169285335 -33043012 + L2 LINE L2 3185 3272 0 22 0 0 0 chr4 169287375 169287397 -33040950 + AT_rich Low_complexity Low_complexity 1 22 0 2189 107 10 3 chr4 169288259 169288568 -33039779 - AluSx SINE Alu -1 311 1 798 81 0 0 chr4 169289411 169289522 -33038825 + (TTCC)n Simple_repeat Simple_repeat 4 114 0 941 337 187 22 chr4 169289540 169290591 -33037756 + L2 LINE L2 470 1694 -1620 640 226 34 29 chr4 169290945 169291153 -33037194 - MER63 DNA MER1_type -852 209 1 788 289 69 57 chr4 169291153 169291572 -33036775 + L2 LINE L2 2320 2743 -571 3543 146 17 22 chr4 169291620 169292252 -33036095 - L1MC1 LINE L1 0 6333 5705 21 0 0 0 chr4 169293708 169293729 -33034618 + AT_rich Low_complexity Low_complexity 1 21 0 402 380 36 71 chr4 169293940 169294390 -33033957 + L2 LINE L2 2812 3245 -27 2372 201 19 41 chr4 169294571 169295108 -33033239 + L1M2 LINE L1 4790 5337 -975 180 0 0 0 chr4 169295108 169295128 -33033219 + (CAAAC)n Simple_repeat Simple_repeat 5 24 0 2372 201 19 41 chr4 169295128 169295440 -33032907 + L1M2 LINE L1 5337 5609 -703 3160 83 0 33 chr4 169295440 169295899 -33032448 + MLT2A1 LTR ERVL 1 444 0 2372 201 19 41 chr4 169295899 169296101 -33032246 + L1M2 LINE L1 5609 5814 -498 411 279 0 8 chr4 169297406 169297528 -33030819 - MER103 DNA DNA -44 122 2 343 304 73 32 chr4 169297774 169297996 -33030351 - MIR SINE MIR -2 260 32 1675 169 3 44 chr4 169298463 169298584 -33029763 + AluJo SINE Alu 2 126 -186 2218 91 10 0 chr4 169298584 169298881 -33029466 - AluY SINE Alu -11 300 1 1675 169 3 44 chr4 169298881 169299079 -33029268 + AluJo SINE Alu 126 308 -4 7012 61 18 0 chr4 169299156 169300140 -33028207 - L1PA8 LINE L1 -2 6170 5174 195 232 0 0 chr4 169300263 169300319 -33028028 + T-rich Low_complexity Low_complexity 1 56 0 210 421 82 6 chr4 169300905 169301088 -33027259 + L3b LINE CR1 1355 1551 -32 215 287 29 11 chr4 169302152 169302296 -33026051 + MIR SINE MIR 55 251 -11 260 253 0 32 chr4 169302909 169303004 -33025343 + L1M4 LINE L1 5355 5446 -675 590 288 75 48 chr4 169303180 169303551 -33024796 + MLT1J1 LTR MaLR 49 429 -17 221 250 0 0 chr4 169303915 169303959 -33024388 + polypurine Low_complexity Low_complexity 3 46 0 209 363 9 44 chr4 169305207 169305320 -33023027 + L2 LINE L2 3111 3219 -53 267 333 109 14 chr4 169305376 169305514 -33022833 - L2 LINE L2 0 3313 3163 3736 76 49 0 chr4 169305898 169306409 -33021938 - L1PA11 LINE L1 -12 6162 5627 24 0 0 0 chr4 169306608 169306632 -33021715 + AT_rich Low_complexity Low_complexity 1 24 0 265 311 76 32 chr4 169306771 169307100 -33021247 + L1M4 LINE L1 5512 5866 -298 407 247 0 0 chr4 169307569 169307654 -33020693 + MER81 DNA DNA 30 114 0 22 0 0 0 chr4 169308082 169308104 -33020243 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 169308237 169308268 -33020079 + AT_rich Low_complexity Low_complexity 1 31 0 243 317 130 16 chr4 169309843 169309966 -33018381 - L2 LINE L2 -1 3312 3176 190 375 0 0 chr4 169310751 169310815 -33017532 + L2 LINE L2 3249 3312 -1 336 270 20 53 chr4 169310985 169311137 -33017210 - L2 LINE L2 0 3313 3167 276 182 18 0 chr4 169311241 169311296 -33017051 + L1ME1 LINE L1 114 169 -6227 6841 57 14 5 chr4 169311316 169312888 -33015459 + L1PA7 LINE L1 4574 6151 -3 429 348 48 24 chr4 169312972 169313348 -33014999 + L1ME1 LINE L1 331 715 -5681 1126 252 70 77 chr4 169313411 169313867 -33014480 - MLT1E LTR MaLR -140 453 1 902 289 64 17 chr4 169313876 169314530 -33013817 + L1ME1 LINE L1 728 1262 -4955 2411 253 93 10 chr4 169314542 169315181 -33013166 + L1ME1 LINE L1 5264 5999 -236 414 0 0 0 chr4 169315181 169315227 -33013120 + (CA)n Simple_repeat Simple_repeat 1 46 0 2411 253 93 10 chr4 169315227 169315484 -33012863 + L1ME1 LINE L1 5999 6233 -2 484 253 167 30 chr4 169315579 169315911 -33012436 - L2 LINE L2 -171 3142 2748 4416 184 18 32 chr4 169315911 169316216 -33012131 + L1MB8 LINE L1 5147 5455 -723 2190 113 0 0 chr4 169316216 169316507 -33011840 + AluSx SINE Alu 17 307 -5 4416 184 18 32 chr4 169316507 169317256 -33011091 + L1MB8 LINE L1 5455 6177 -1 202 216 0 54 chr4 169317562 169317636 -33010711 + T-rich Low_complexity Low_complexity 4 73 0 4849 156 40 23 chr4 169317720 169318762 -33009585 + L1PB3 LINE L1 4722 5803 -351 180 0 0 0 chr4 169318762 169318782 -33009565 + (TA)n Simple_repeat Simple_repeat 1 20 0 4849 156 40 23 chr4 169318782 169319067 -33009280 + L1PB3 LINE L1 5803 6082 -72 554 156 49 16 chr4 169319199 169319321 -33009026 + L1MB7 LINE L1 6048 6173 -11 202 216 0 54 chr4 169319633 169319707 -33008640 + T-rich Low_complexity Low_complexity 4 73 0 5410 170 38 21 chr4 169319798 169320833 -33007514 + L1PB3 LINE L1 4729 5803 -351 180 0 0 0 chr4 169320833 169320853 -33007494 + (TA)n Simple_repeat Simple_repeat 1 20 0 5410 170 38 21 chr4 169320853 169321202 -33007145 + L1PB3 LINE L1 5803 6145 -9 426 213 0 0 chr4 169321203 169321297 -33007050 + (CATA)n Simple_repeat Simple_repeat 2 95 0 374 161 58 11 chr4 169321534 169321621 -33006726 - Charlie7 DNA MER1_type -683 1929 1839 233 247 31 82 chr4 169323413 169323510 -33004837 - MIR3 SINE MIR 0 208 117 260 322 17 21 chr4 169323753 169323894 -33004453 - MIR SINE MIR -47 161 26 503 329 35 4 chr4 169325140 169325371 -33002976 - MIR SINE MIR -5 257 20 2114 123 3 0 chr4 169326027 169326320 -33002027 - AluSq SINE Alu -19 294 1 383 304 20 0 chr4 169326331 169326433 -33001914 - MIR3 SINE MIR -54 154 51 799 336 88 18 chr4 169327772 169328347 -33000000 - L2 LINE L2 0 3313 2704 530 298 57 67 chr4 169328733 169329105 -32999242 + L1MEc LINE L1 2004 2371 -4025 226 256 8 26 chr4 169329110 169329227 -32999120 + A-rich Low_complexity Low_complexity 5 119 0 3461 38 36 0 chr4 169329231 169329652 -32998695 - L1PA8 LINE L1 -199 5973 5538 581 260 61 37 chr4 169329737 169329983 -32998364 + LTR50 LTR ERVL 3 254 -541 249 291 94 0 chr4 169330017 169330134 -32998213 + LTR50 LTR ERVL 355 482 -313 400 279 87 22 chr4 169330192 169330375 -32997972 + LTR33A LTR ERVL 329 523 0 685 313 55 0 chr4 169330375 169330682 -32997665 + L1MEc LINE L1 2367 2690 -3525 551 244 202 14 chr4 169330699 169330986 -32997361 - L2 LINE L2 -649 2665 2325 2400 89 0 0 chr4 169334617 169334920 -32993427 - AluSx SINE Alu -7 305 3 2042 129 10 13 chr4 169336946 169337248 -32991099 - AluSp SINE Alu -12 301 1 3148 166 32 2 chr4 169337896 169338481 -32989866 - LTR26 LTR ERV1 0 603 1 291 209 23 12 chr4 169339921 169340007 -32988340 + (TA)n Simple_repeat Simple_repeat 1 87 0 11043 113 14 7 chr4 169340578 169343008 -32985339 + L1PA8 LINE L1 3713 6154 -18 3674 102 78 0 chr4 169343109 169343714 -32984633 - L1P3 LINE L1 -2464 3997 3346 * 10794 143 19 58 chr4 169343710 169346187 -32982160 - L1P3 LINE L1 -3571 2890 411 261 0 0 0 chr4 169346187 169346216 -32982131 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 10794 143 19 58 chr4 169346216 169346607 -32981740 - L1P3 LINE L1 -6050 411 6 7902 172 27 19 chr4 169346840 169347990 -32980357 - L1P3 LINE L1 -4899 1562 394 261 0 0 0 chr4 169347990 169348019 -32980328 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7902 172 27 19 chr4 169348019 169348412 -32979935 - L1P3 LINE L1 -6067 394 6 198 319 0 55 chr4 169348559 169348650 -32979697 + L2 LINE L2 2447 2532 -782 249 301 81 57 chr4 169348984 169349107 -32979240 + L2 LINE L2 2953 3078 -194 237 328 66 8 chr4 169349759 169349881 -32978466 + MER117 DNA MER1_type 52 180 -17 311 331 55 8 chr4 169349900 169350027 -32978320 - MIR3 SINE MIR -46 162 30 22 0 0 0 chr4 169350450 169350472 -32977875 + AT_rich Low_complexity Low_complexity 1 22 0 1032 206 29 10 chr4 169350695 169350899 -32977448 + MER3 DNA MER1_type 1 208 -1 206 384 90 41 chr4 169352058 169352324 -32976023 - L2 LINE L2 0 3272 2994 1671 155 157 8 chr4 169352546 169352932 -32975415 - Tigger2a DNA MER2_type 0 444 9 31 44 0 0 chr4 169352935 169352980 -32975367 + AT_rich Low_complexity Low_complexity 1 45 0 307 294 80 7 chr4 169353008 169353147 -32975200 - MIR SINE MIR -64 144 13 1993 164 99 27 chr4 169353147 169353550 -32974797 + Tigger2a DNA MER2_type 3 434 0 1192 172 5 5 chr4 169353843 169354046 -32974301 + Tigger2 DNA MER2_type 2516 2718 0 1792 211 6 8 chr4 169354285 169354649 -32973698 - MLT1A1 LTR MaLR -2 363 1 1836 133 52 4 chr4 169357392 169357662 -32970685 - AluSx SINE Alu -27 285 3 500 339 117 54 chr4 169358037 169359090 -32969257 - L2 LINE L2 -4 3309 2174 266 276 9 48 chr4 169359138 169359243 -32969104 - MIR SINE MIR -87 175 75 1673 133 51 3 chr4 169360309 169360602 -32967745 - LTR26 LTR ERV1 -233 370 64 210 421 82 6 chr4 169361576 169361759 -32966588 + L3b LINE CR1 1355 1551 -32 344 291 130 40 chr4 169363679 169363902 -32964445 - MIR SINE MIR 0 262 20 304 317 8 58 chr4 169365083 169365204 -32963143 - MIR SINE MIR -35 173 58 210 296 163 31 chr4 169365451 169365549 -32962798 + MIR3 SINE MIR 14 124 -84 280 374 30 0 chr4 169366169 169366268 -32962079 + MIR SINE MIR 15 116 -146 356 319 66 6 chr4 169366560 169366726 -32961621 - MIR SINE MIR -14 248 73 1592 132 0 0 chr4 169366737 169366956 -32961391 + AluSx SINE Alu 1 219 -93 258 156 0 0 chr4 169366991 169367036 -32961311 + A-rich Low_complexity Low_complexity 1 45 0 204 143 0 0 chr4 169367116 169367158 -32961189 + (A)n Simple_repeat Simple_repeat 1 42 0 1216 203 106 68 chr4 169368873 169369316 -32959031 - MLT1C LTR MaLR 0 467 8 3984 257 45 27 chr4 169369659 169371226 -32957121 - L1M4 LINE L1 -1501 5666 4073 4698 167 64 11 chr4 169372135 169372341 -32956006 - L1MA9 LINE L1 0 6312 6118 1571 169 132 6 chr4 169372341 169372666 -32955681 + MER47A DNA MER2_type 1 366 0 4698 167 64 11 chr4 169372666 169373422 -32954925 - L1MA9 LINE L1 -194 6118 5299 1450 286 24 67 chr4 169373424 169374182 -32954165 - L1M4 LINE L1 -5055 2113 1389 1075 293 107 40 chr4 169374446 169374971 -32953376 - L1M4 LINE L1 -6608 560 1 243 0 0 0 chr4 169375126 169375153 -32953194 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2368 92 0 0 chr4 169375290 169375583 -32952764 - AluSx SINE Alu -19 293 1 6659 219 50 20 chr4 169377122 169378786 -32949561 - L1MC3 LINE L1 -133 7652 5940 1418 154 126 28 chr4 169378956 169379281 -32949066 - L1MA4A LINE L1 -8 6295 5939 42 0 0 0 chr4 169380094 169380136 -32948211 + AT_rich Low_complexity Low_complexity 1 42 0 551 244 202 14 chr4 169381427 169381714 -32946633 + L2 LINE L2 2325 2665 -649 685 313 55 0 chr4 169381731 169382038 -32946309 - L1M4 LINE L1 -3525 2621 2298 400 279 87 22 chr4 169382038 169382221 -32946126 - LTR33A LTR ERVL 0 523 329 249 291 94 0 chr4 169382279 169382396 -32945951 - LTR50 LTR ERVL -313 482 355 316 281 78 0 chr4 169382424 169382552 -32945795 - LTR50 LTR ERVL -536 259 122 22 56 0 0 chr4 169383063 169383099 -32945248 + AT_rich Low_complexity Low_complexity 1 36 0 277 200 17 25 chr4 169384286 169384406 -32943941 + (TA)n Simple_repeat Simple_repeat 2 120 0 387 370 88 48 chr4 169386830 169387398 -32940949 - L2 LINE L2 -679 2635 2045 2511 96 3 8 chr4 169387564 169387918 -32940429 - THE1C LTR MaLR -23 352 1 998 158 0 0 chr4 169387918 169388076 -32940271 - MLT1B LTR MaLR -16 374 217 11822 142 22 11 chr4 169388223 169390366 -32937981 - L1P3 LINE L1 -682 5472 3320 2462 81 29 0 chr4 169391579 169391923 -32936424 + L1PA13 LINE L1 5806 6159 -4 7568 93 2 3 chr4 169392474 169393549 -32934798 - L1PA7 LINE L1 -1300 4846 3773 6599 69 23 0 chr4 169393550 169394829 -32933518 + L1PA7 LINE L1 4855 6154 0 3598 279 48 11 chr4 169445149 169446369 -32881978 - HERVL40 LTR ERVL -1533 3997 2698 201 39 0 0 chr4 169447073 169447099 -32881248 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 22 0 0 0 chr4 169447654 169447676 -32880671 + AT_rich Low_complexity Low_complexity 1 22 0 405 121 165 0 chr4 169448216 169448307 -32880040 + L1MA5 LINE L1 6192 6297 -3 542 288 48 33 chr4 169448339 169448732 -32879615 + L1M4 LINE L1 1264 1662 -4880 532 208 26 36 chr4 169448768 169448960 -32879387 - L1M4 LINE L1 -1574 4572 4383 1246 217 54 14 chr4 169449012 169449288 -32879059 + AluJo SINE Alu 1 287 -15 321 291 46 86 chr4 169449914 169450065 -32878282 + MIR3 SINE MIR 36 180 -28 438 284 73 8 chr4 169450302 169450658 -32877689 - L1M4 LINE L1 -2636 3510 3132 30 59 0 0 chr4 169450672 169450723 -32877624 + AT_rich Low_complexity Low_complexity 1 51 0 278 276 19 23 chr4 169450880 169451244 -32877103 + A-rich Low_complexity Low_complexity 1 362 0 360 265 80 154 chr4 169451368 169451791 -32876556 + L1M2a LINE L1 585 976 -6192 1956 208 36 17 chr4 169451949 169452527 -32875820 + L1M2a LINE L1 1769 2357 -4811 180 0 0 0 chr4 169452627 169452647 -32875700 + (G)n Simple_repeat Simple_repeat 1 20 0 917 208 129 6 chr4 169452699 169453010 -32875337 + MSTB LTR MaLR 63 422 -4 768 158 72 0 chr4 169453002 169453141 -32875206 - MER77 LTR ERV1 -447 158 10 * 433 275 125 9 chr4 169453828 169454051 -32874296 - MLT1F1 LTR MaLR -8 559 286 412 204 0 74 chr4 169454075 169454237 -32874110 + MLT1B LTR MaLR 1 150 -224 1494 268 72 9 chr4 169457147 169457699 -32870648 + L1ME3A LINE L1 5583 6169 -1 424 132 15 0 chr4 169458932 169459000 -32869347 - HERVL LTR ERVL -1112 4542 4474 9431 98 5 9 chr4 169459000 169460401 -32867946 - HERVL LTR ERVL -4149 1505 110 326 240 0 8 chr4 169460401 169460422 -32867925 + (TA)n Simple_repeat Simple_repeat 2 22 -103 2380 19 0 0 chr4 169460422 169460684 -32867663 - AluY SINE Alu -12 299 38 326 240 0 8 chr4 169460684 169460787 -32867560 + (TA)n Simple_repeat Simple_repeat 22 125 0 1032 239 22 31 chr4 169461342 169461698 -32866649 + L1MD3 LINE L1 7641 7993 -2 1888 141 0 4 chr4 169462349 169462626 -32865721 - AluSx SINE Alu -36 276 1 25 31 0 0 chr4 169463096 169463128 -32865219 + AT_rich Low_complexity Low_complexity 1 32 0 806 209 83 28 chr4 169464481 169464734 -32863613 - LTR40b LTR ERVL 0 462 196 1222 280 46 13 chr4 169465033 169465405 -32862942 - HERVL40 LTR ERVL -1097 4433 4050 774 299 34 25 chr4 169465505 169465860 -32862487 - HERVL40 LTR ERVL -3921 1609 1252 281 274 59 20 chr4 169465856 169465958 -32862389 - HERVL40 LTR ERVL -4238 1292 1187 * 2518 168 19 18 chr4 169466272 169467230 -32861117 + L1P5 LINE L1 4792 5755 -401 459 201 0 0 chr4 169467330 169467504 -32860843 + G-rich Low_complexity Low_complexity 1 174 0 183 139 0 0 chr4 169467613 169467649 -32860698 + (G)n Simple_repeat Simple_repeat 1 36 0 584 100 46 8 chr4 169467677 169467807 -32860540 + CT-rich Low_complexity Low_complexity 1 135 0 945 175 17 6 chr4 169467809 169468008 -32860339 + MLT1B LTR MaLR 173 388 -2 302 292 82 47 chr4 169468011 169468078 -32860269 - MLT1G LTR MaLR -276 314 251 6075 125 27 20 chr4 169468078 169469040 -32859307 + LTR5 LTR ERVK 1 969 0 302 292 82 47 chr4 169469040 169469143 -32859204 - MLT1G LTR MaLR -339 251 138 25 65 0 0 chr4 169469700 169469746 -32858601 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr4 169470747 169470771 -32857576 + GC_rich Low_complexity Low_complexity 1 24 0 2125 178 31 21 chr4 169471044 169471465 -32856882 + MSTA LTR MaLR 4 428 0 3878 184 8 5 chr4 169471465 169472214 -32856133 + MSTA-int LTR MaLR 1 751 -900 279 152 0 0 chr4 169472218 169472264 -32856083 + MSTA LTR MaLR 383 428 0 210 105 0 0 chr4 169472431 169472469 -32855878 + (TG)n Simple_repeat Simple_repeat 2 39 0 1317 271 28 33 chr4 169473456 169473853 -32854494 + L2 LINE L2 2611 3009 -304 374 240 20 68 chr4 169473843 169473989 -32854358 - L2 LINE L2 -6 3307 3169 * 481 322 61 13 chr4 169474259 169474489 -32853858 + L2 LINE L2 3073 3313 0 21 57 0 0 chr4 169475187 169475222 -32853125 + AT_rich Low_complexity Low_complexity 1 35 0 29 28 0 0 chr4 169475322 169475358 -32852989 + AT_rich Low_complexity Low_complexity 1 36 0 256 291 0 0 chr4 169475531 169475586 -32852761 + MLT2E LTR ERVL 32 86 -542 446 322 30 79 chr4 169476077 169476344 -32852003 + L1MEc LINE L1 52 305 -6091 2289 97 7 7 chr4 169476457 169476767 -32851580 - AluSg SINE Alu 0 310 1 12670 227 26 11 chr4 169477133 169481009 -32847338 + L1M2 LINE L1 2070 6005 -843 5173 109 1 30 chr4 169481167 169481994 -32846353 - L1P LINE L1 -1701 4445 3643 5565 116 225 8 chr4 169481994 169482709 -32845638 + L1P LINE L1 2351 2910 -3236 2418 69 10 0 chr4 169482709 169483013 -32845334 + AluY SINE Alu 1 307 -4 5565 116 225 8 chr4 169483013 169483352 -32844995 + L1P LINE L1 2910 3633 -2513 515 270 104 46 chr4 169483359 169483704 -32844643 - L1MEc LINE L1 -4760 1636 1272 326 219 55 31 chr4 169484038 169484166 -32844181 - L1ME4a LINE L1 -12 6109 5979 1354 148 25 0 chr4 169484234 169484470 -32843877 - L1PA16 LINE L1 -2 6164 5923 1519 82 63 0 chr4 169484484 169484691 -32843656 - AluY SINE Alu -23 288 69 27 29 0 0 chr4 169484808 169484842 -32843505 + AT_rich Low_complexity Low_complexity 1 34 0 764 311 72 25 chr4 169487481 169487841 -32840506 - MLT1I LTR MaLR -26 383 7 859 39 0 0 chr4 169488222 169488325 -32840022 - L1PA6 LINE L1 -5 6149 6047 4315 172 39 10 chr4 169488878 169490445 -32837902 + L1MB1 LINE L1 4498 6116 -52 630 91 0 0 chr4 169490558 169490646 -32837701 - AluS SINE Alu -211 102 15 864 157 26 7 chr4 169490660 169490813 -32837534 - L1PA16 LINE L1 -229 5937 5782 24 53 0 0 chr4 169490876 169490914 -32837433 + AT_rich Low_complexity Low_complexity 1 38 0 672 347 25 9 chr4 169491489 169491812 -32836535 + L1MEc LINE L1 381 708 -6013 2092 251 47 32 chr4 169491843 169492880 -32835467 + L1MEc LINE L1 1788 2848 -3692 1534 147 20 103 chr4 169492880 169493276 -32835071 - MLT1A1 LTR MaLR -2 363 1 2092 251 47 32 chr4 169493276 169493606 -32834741 + L1MEc LINE L1 2848 3172 -3368 30660 119 11 66 chr4 169493621 169497733 -32830614 + L1PA7 LINE L1 12 3685 -2469 2204 116 0 16 chr4 169497733 169498036 -32830311 + AluSg SINE Alu 3 300 -10 30660 119 11 66 chr4 169498036 169499862 -32828485 + L1PA7 LINE L1 3685 5610 -544 1235 124 0 52 chr4 169499973 169500206 -32828141 + L1PA7 LINE L1 5928 6148 -6 232 276 69 17 chr4 169500206 169500322 -32828025 + L1MEc LINE L1 3168 3289 -3251 932 178 0 70 chr4 169500328 169500541 -32827806 + AluJb SINE Alu 5 202 -110 25 31 0 0 chr4 169500688 169500720 -32827627 + AT_rich Low_complexity Low_complexity 1 32 0 623 189 101 40 chr4 169500800 169501027 -32827320 + L1MEc LINE L1 3352 3592 -2948 1065 257 61 78 chr4 169501033 169501636 -32826711 + MLT1E LTR MaLR 1 593 0 248 346 69 19 chr4 169501666 169501825 -32826522 - L2 LINE L2 -554 2760 2594 1278 246 92 48 chr4 169502146 169502560 -32825787 - MER70A LTR ERVL -36 436 5 231 300 122 0 chr4 169502563 169502653 -32825694 - MIR SINE MIR -99 163 63 262 182 106 30 chr4 169503085 169503151 -32825196 - L2 LINE L2 -5 3308 3238 204 320 128 17 chr4 169503353 169503525 -32824822 - L2 LINE L2 -2354 960 770 6068 121 34 21 chr4 169503569 169503670 -32824677 + L1MA3 LINE L1 5208 5306 -999 2249 108 0 0 chr4 169503670 169503967 -32824380 + AluSq SINE Alu 1 297 -16 6068 121 34 21 chr4 169503967 169504948 -32823399 + L1MA3 LINE L1 5306 6305 0 637 213 74 16 chr4 169504982 169505226 -32823121 - MER33 DNA MER1_type -29 295 38 405 0 0 0 chr4 169505971 169506016 -32822331 + (TG)n Simple_repeat Simple_repeat 2 46 0 1825 163 48 57 chr4 169508553 169508971 -32819376 - MLT2D LTR ERVL 0 414 1 503 358 80 42 chr4 169509676 169510456 -32817891 - L2 LINE L2 -207 3065 2258 235 184 0 0 chr4 169510558 169510596 -32817751 + L2 LINE L2 3257 3294 -19 2397 71 0 0 chr4 169510844 169511138 -32817209 - AluY SINE Alu -17 294 1 405 95 0 0 chr4 169511819 169511882 -32816465 + (GA)n Simple_repeat Simple_repeat 2 64 0 219 189 0 0 chr4 169512045 169512082 -32816265 + L2 LINE L2 3219 3255 -17 491 312 51 33 chr4 169513054 169513269 -32815078 + MLT1K LTR MaLR 314 532 -56 21 0 0 0 chr4 169515444 169515465 -32812882 + AT_rich Low_complexity Low_complexity 1 21 0 3903 210 23 11 chr4 169515889 169515978 -32812369 - L1 LINE L1 -3041 4524 4438 2127 92 7 14 chr4 169515978 169516262 -32812085 + AluSx SINE Alu 16 297 -15 3903 210 23 11 chr4 169516262 169517201 -32811146 - L1 LINE L1 -3127 4438 3481 * 4088 112 19 22 chr4 169517175 169517854 -32810493 - L1 LINE L1 -4396 3169 2493 872 197 0 45 chr4 169517855 169518033 -32810314 - AluSg/x SINE Alu -16 294 125 228 270 0 0 chr4 169518053 169518127 -32810220 - L1MC4 LINE L1 -1350 6692 6619 210 37 0 0 chr4 169518127 169518154 -32810193 + (CA)n Simple_repeat Simple_repeat 1 27 0 269 158 0 0 chr4 169518154 169518192 -32810155 + AluSp SINE Alu 125 162 -141 572 150 0 83 chr4 169518207 169518327 -32810020 - AluJb SINE Alu -182 130 21 13079 178 50 14 chr4 169518350 169520741 -32807606 - L1M1 LINE L1 -5076 2489 13 264 280 89 30 chr4 169520750 169520918 -32807429 - L1M4c LINE L1 -5002 1382 1205 2152 112 97 0 chr4 169521313 169521643 -32806704 - THE1B LTR MaLR -2 362 1 270 278 72 87 chr4 169521966 169522229 -32806118 - HAL1b LINE L1 -620 728 462 943 221 59 0 chr4 169522229 169522433 -32805914 - MER20 DNA MER1_type 0 219 4 270 278 72 87 chr4 169522433 169522867 -32805480 - HAL1b LINE L1 -886 462 42 270 0 0 0 chr4 169522975 169523005 -32805342 + (TG)n Simple_repeat Simple_repeat 2 31 0 1372 186 16 69 chr4 169523103 169523409 -32804938 + AluJo SINE Alu 3 292 -20 2800 10 0 0 chr4 169523528 169523832 -32804515 + AluYa5 SINE Alu 1 304 -7 25 0 0 28 chr4 169523932 169523947 -32804400 + AT_rich Low_complexity Low_complexity 1 15 -20 2461 78 0 9 chr4 169523947 169524280 -32804067 - L1PA7 LINE L1 -2 6152 5823 25 0 0 28 chr4 169524280 169524300 -32804047 + AT_rich Low_complexity Low_complexity 15 35 0 29 0 0 0 chr4 169524505 169524534 -32803813 + AT_rich Low_complexity Low_complexity 1 29 0 1863 40 53 0 chr4 169524567 169524795 -32803552 - AluY SINE Alu -3 308 69 27 29 0 0 chr4 169524912 169524946 -32803401 + AT_rich Low_complexity Low_complexity 1 34 0 877 311 67 19 chr4 169527581 169527941 -32800406 - MLT1I LTR MaLR -26 383 7 856 39 0 0 chr4 169528322 169528425 -32799922 - L1PA6 LINE L1 -5 6149 6047 4601 172 41 9 chr4 169528978 169530590 -32797757 + L1MB1 LINE L1 4498 6168 0 972 215 18 27 chr4 169531197 169531420 -32796927 - MER58A DNA MER1_type 0 224 4 780 216 34 10 chr4 169531431 169531635 -32796712 - MER3 DNA MER1_type 0 209 1 429 289 14 14 chr4 169532186 169532328 -32796019 - MARNA DNA Mariner -48 538 397 1766 199 20 3 chr4 169532358 169532714 -32795633 - MER47A DNA MER2_type -3 363 2 2270 209 38 59 chr4 169533144 169533756 -32794591 - LTR9 LTR ERV1 -13 599 1 1107 153 10 0 chr4 169533954 169534150 -32794197 + L1PB1 LINE L1 3 200 -6663 * 12381 161 58 57 chr4 169534130 169534336 -32794011 + L1PB1 LINE L1 620 824 -6043 2508 77 50 6 chr4 169534336 169534676 -32793671 - THE1A LTR MaLR 0 355 1 11186 101 9 5 chr4 169534676 169536250 -32792097 - THE1A-int LTR MaLR 0 1580 1 2506 97 17 0 chr4 169536250 169536599 -32791748 - THE1A LTR MaLR 0 355 1 12381 161 58 57 chr4 169536599 169539370 -32788977 + L1PB1 LINE L1 824 3590 -3277 1407 143 23 0 chr4 169539370 169539586 -32788761 + AluSg/x SINE Alu 86 306 -6 12381 161 58 57 chr4 169539586 169540206 -32788141 + L1PB1 LINE L1 3590 4208 -2659 234 0 0 0 chr4 169540206 169540232 -32788115 + (CAA)n Simple_repeat Simple_repeat 2 27 0 12381 161 58 57 chr4 169540232 169542307 -32786040 + L1PB1 LINE L1 4208 6507 -360 496 127 57 4 chr4 169542320 169542552 -32785795 + (TA)n Simple_repeat Simple_repeat 1 244 0 351 0 0 0 chr4 169542552 169542591 -32785756 + (CA)n Simple_repeat Simple_repeat 2 40 0 2510 79 9 0 chr4 169542638 169542980 -32785367 + L1PB1 LINE L1 6523 6867 0 21 57 0 0 chr4 169544557 169544592 -32783755 + AT_rich Low_complexity Low_complexity 1 35 0 1196 219 52 8 chr4 169545051 169545302 -32783045 - MSTB1 LTR MaLR -170 262 1 2226 94 0 10 chr4 169546102 169546409 -32781938 + AluSx SINE Alu 1 304 -8 2747 22 0 6 chr4 169546409 169546727 -32781620 + AluYb8 SINE Alu 1 316 -2 222 37 0 0 chr4 169547551 169547578 -32780769 + (A)n Simple_repeat Simple_repeat 1 27 0 8581 47 10 1 chr4 169547609 169548670 -32779677 - MER11C LTR ERVK 0 1071 1 1310 169 134 54 chr4 169548723 169548828 -32779519 + MER44D DNA MER2_type 1 96 -2395 447 19 0 0 chr4 169548828 169548880 -32779467 + (CA)n Simple_repeat Simple_repeat 2 53 0 1310 169 134 54 chr4 169548880 169549087 -32779260 + MER44D DNA MER2_type 96 608 -1 530 88 0 0 chr4 169549282 169549362 -32778985 - L1PA6 LINE L1 -1 6153 6074 24 32 0 0 chr4 169550883 169550914 -32777433 + AT_rich Low_complexity Low_complexity 1 31 0 230 0 0 32 chr4 169550954 169550985 -32777362 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 22 0 0 0 chr4 169551409 169551431 -32776916 + AT_rich Low_complexity Low_complexity 1 22 0 2127 85 57 0 chr4 169551616 169551898 -32776449 + AluY SINE Alu 1 298 -13 1699 239 112 18 chr4 169551963 169553318 -32775029 - L1MCa LINE L1 -3276 3150 1565 6816 56 43 2 chr4 169553327 169554508 -32773839 - L1PA7 LINE L1 -3 6151 4948 258 279 19 19 chr4 169554516 169554620 -32773727 - L1MCa LINE L1 -6315 111 8 227 300 33 25 chr4 169554594 169554714 -32773633 - L1MC/D LINE L1 -2353 5735 5615 * 250 272 140 53 chr4 169554731 169554956 -32773391 - MLT1F LTR MaLR -6 536 292 1252 257 50 101 chr4 169554956 169555610 -32772737 - MLT1E2 LTR MaLR 0 626 6 10184 212 20 11 chr4 169555714 169558162 -32770185 - L1PB4 LINE L1 -9 6147 3661 198 0 0 0 chr4 169558162 169558184 -32770163 + (TTG)n Simple_repeat Simple_repeat 3 24 0 10184 212 20 11 chr4 169558184 169559054 -32769293 - L1PB4 LINE L1 -2495 3661 2801 640 283 147 44 chr4 169559430 169559841 -32768506 - MLT1G1 LTR MaLR -148 402 1 343 303 86 43 chr4 169559907 169560362 -32767985 - MLT1H LTR MaLR 0 567 16 23 68 0 0 chr4 169560640 169560684 -32767663 + AT_rich Low_complexity Low_complexity 1 44 0 2336 82 0 3 chr4 169561026 169561330 -32767017 - AluY SINE Alu -8 303 1 215 211 0 35 chr4 169562502 169562559 -32765788 + (CATATA)n Simple_repeat Simple_repeat 2 56 0 21 82 0 0 chr4 169562780 169562829 -32765518 + AT_rich Low_complexity Low_complexity 1 49 0 1685 268 72 9 chr4 169563631 169564183 -32764164 + L1ME3A LINE L1 5583 6169 -1 2360 63 3 7 chr4 169565312 169565613 -32762734 + AluY SINE Alu 1 300 -11 3207 196 124 78 chr4 169565830 169566386 -32761961 - L1MC3 LINE L1 0 7785 7256 249 239 15 15 chr4 169566386 169566453 -32761894 - MLT1E LTR MaLR -463 130 64 3207 196 124 78 chr4 169566453 169566862 -32761485 - L1MC3 LINE L1 -529 7256 6707 2716 73 0 78 chr4 169567322 169567627 -32760720 + L1P5 LINE L1 5381 5643 -508 2179 116 3 3 chr4 169567627 169567928 -32760419 - AluSp SINE Alu -12 301 1 2716 73 0 78 chr4 169567928 169568058 -32760289 + L1P5 LINE L1 5643 5782 -369 351 0 0 0 chr4 169568058 169568097 -32760250 + (CA)n Simple_repeat Simple_repeat 2 40 0 1647 176 9 31 chr4 169568098 169568416 -32759931 - LTR22 LTR ERVK -198 311 1 862 208 97 65 chr4 169569795 169569877 -32758470 + L1MA9 LINE L1 5784 5862 -429 1836 99 63 43 chr4 169569877 169570179 -32758168 + AluSq SINE Alu 1 308 -5 862 208 97 65 chr4 169570179 169570408 -32757939 + L1MA9 LINE L1 5862 6143 -148 186 43 0 0 chr4 169570408 169570431 -32757916 + (TATTG)n Simple_repeat Simple_repeat 3 25 0 862 208 97 65 chr4 169570431 169570567 -32757780 + L1MA9 LINE L1 6143 6273 -18 1553 167 63 0 chr4 169571353 169571671 -32756676 - L1MA5 LINE L1 -10 6290 5953 22 35 0 0 chr4 169571764 169571793 -32756554 + AT_rich Low_complexity Low_complexity 1 29 0 2269 104 10 0 chr4 169572089 169572398 -32755949 - AluSx SINE Alu 0 312 1 21 57 0 0 chr4 169572441 169572476 -32755871 + AT_rich Low_complexity Low_complexity 1 35 0 606 163 0 0 chr4 169573805 169573946 -32754401 + (CA)n Simple_repeat Simple_repeat 2 142 0 639 307 120 36 chr4 169575811 169576406 -32751941 - L2 LINE L2 0 3313 2588 3237 172 43 28 chr4 169576415 169576649 -32751698 - L1MA9 LINE L1 -6 6306 6077 1401 236 19 39 chr4 169576649 169577013 -32751334 - MLT1A1 LTR MaLR -4 361 5 3237 172 43 28 chr4 169577013 169577215 -32751132 - L1MA9 LINE L1 -235 6077 5880 330 26 0 0 chr4 169577215 169577254 -32751093 + (TG)n Simple_repeat Simple_repeat 2 40 0 3237 172 43 28 chr4 169577254 169577451 -32750896 - L1MA9 LINE L1 -432 5880 5688 2094 150 8 32 chr4 169577451 169577824 -32750523 - THE1B LTR MaLR 0 364 1 10841 112 8 19 chr4 169577824 169579421 -32748926 - THE1B-int LTR MaLR 0 1580 1 2144 153 5 27 chr4 169579421 169579793 -32748554 - THE1B LTR MaLR 0 364 1 3237 172 43 28 chr4 169579793 169580675 -32747672 - L1MA9 LINE L1 -623 5689 4671 531 239 14 63 chr4 169580675 169580897 -32747450 + L1 LINE L1 2119 2329 -3817 * 1065 252 18 6 chr4 169580895 169581224 -32747123 + L1 LINE L1 2643 2975 -3171 2737 286 39 25 chr4 169581228 169581754 -32746593 - L2 LINE L2 -708 2606 2089 2008 145 19 43 chr4 169581754 169582127 -32746220 + THE1B LTR MaLR 1 364 0 2737 286 39 25 chr4 169582127 169582198 -32746149 - L2 LINE L2 -1225 2089 2020 2082 122 16 0 chr4 169582198 169582501 -32745846 + AluSx SINE Alu 1 308 -4 2737 286 39 25 chr4 169582501 169582836 -32745511 - L2 LINE L2 -1294 2020 1660 300 258 0 43 chr4 169582860 169582953 -32745394 - L2 LINE L2 -1904 1410 1322 323 325 73 8 chr4 169583936 169584059 -32744288 + L2 LINE L2 3182 3312 -1 1875 158 95 28 chr4 169584606 169585006 -32743341 - MSTA LTR MaLR 0 428 2 791 140 40 0 chr4 169585284 169585456 -32742891 - L1M LINE L1 -745 5401 5231 1809 178 38 2 chr4 169585763 169586156 -32742191 - L1MC2 LINE L1 -9 6335 5929 242 219 16 0 chr4 169586601 169586665 -32741682 + CT-rich Low_complexity Low_complexity 1 65 0 214 167 0 0 chr4 169586805 169586841 -32741506 + MIR3 SINE MIR 158 193 -15 638 335 74 14 chr4 169586842 169587126 -32741221 + L2 LINE L2 2544 2844 -470 239 243 40 20 chr4 169587370 169587518 -32740829 + (TATATG)n Simple_repeat Simple_repeat 6 156 0 303 93 0 0 chr4 169587566 169587609 -32740738 + (TG)n Simple_repeat Simple_repeat 2 44 0 313 277 175 74 chr4 169589385 169589710 -32738637 - L2 LINE L2 -338 2976 2619 887 323 125 21 chr4 169590011 169590797 -32737550 + L2 LINE L2 2440 3312 -1 28 29 0 0 chr4 169591313 169591348 -32736999 + AT_rich Low_complexity Low_complexity 1 35 0 468 305 30 30 chr4 169591503 169591670 -32736677 + MIR SINE MIR 21 187 -75 1994 159 39 99 chr4 169592917 169593475 -32734872 - L1MD1 LINE L1 -5 6237 5719 351 203 0 0 chr4 169593475 169593554 -32734793 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 577 234 14 0 chr4 169593614 169593759 -32734588 - L1MD1 LINE L1 -528 5714 5568 21 57 0 0 chr4 169594577 169594612 -32733735 + AT_rich Low_complexity Low_complexity 1 35 0 567 234 14 0 chr4 169599041 169599186 -32729161 - L1MC/D LINE L1 -528 5714 5568 2492 192 42 59 chr4 169599702 169600409 -32727938 - L1MA10 LINE L1 -29 6305 5611 1557 183 42 40 chr4 169600388 169600866 -32727481 + L1M3 LINE L1 4998 5484 -684 * 207 0 0 0 chr4 169600866 169600889 -32727458 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1557 183 42 40 chr4 169600889 169601029 -32727318 + L1M3 LINE L1 5484 5622 -546 353 312 115 51 chr4 169601132 169601507 -32726840 - L2 LINE L2 -967 2347 1949 244 277 0 24 chr4 169602942 169603025 -32725322 + CT-rich Low_complexity Low_complexity 4 84 0 197 128 0 26 chr4 169603033 169603072 -32725275 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 1308 278 3 27 chr4 169603538 169603912 -32724435 - MLT1A1 LTR MaLR 0 365 1 181 311 131 66 chr4 169605248 169605431 -32722916 + MIR SINE MIR 50 244 -18 1954 177 82 15 chr4 169605800 169606201 -32722146 - MSTA LTR MaLR 0 428 1 9305 174 29 4 chr4 169606201 169607812 -32720535 - MSTA-int LTR MaLR 0 1651 1 2066 144 118 5 chr4 169607812 169608195 -32720152 - MSTA LTR MaLR 0 428 3 1880 209 30 30 chr4 169608417 169608915 -32719432 - MLT1D LTR MaLR 0 505 8 310 336 116 17 chr4 169609061 169609293 -32719054 + L3 LINE CR1 1130 1384 -193 2174 112 11 0 chr4 169609824 169610110 -32718237 + AluSg SINE Alu 1 289 -21 2813 85 13 0 chr4 169610176 169610566 -32717781 + MLT2A2 LTR ERVL 1 395 -58 315 230 0 0 chr4 169610566 169610653 -32717694 + (TA)n Simple_repeat Simple_repeat 2 88 0 2506 7 0 0 chr4 169610669 169610940 -32717407 + AluY SINE Alu 38 308 -3 210 71 0 0 chr4 169610940 169610968 -32717379 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 36169 89 11 18 chr4 169610968 169616289 -32712058 + HERVL-A2 LTR ERVL 110 5391 -263 39496 41 27 3 chr4 169616427 169622067 -32706280 - L1P1 LINE L1 -357 5798 22 408 279 10 45 chr4 169625090 169625161 -32703186 + LTR33A LTR ERVL 330 402 -121 1649 216 71 120 chr4 169625161 169625795 -32702552 + MER77 LTR ERV1 3 605 0 408 279 10 45 chr4 169625795 169625924 -32702423 + LTR33A LTR ERVL 402 523 0 21 57 0 0 chr4 169626051 169626086 -32702261 + AT_rich Low_complexity Low_complexity 1 35 0 243 314 164 0 chr4 169626216 169626356 -32701991 + MIR SINE MIR 49 211 -51 1204 298 21 99 chr4 169626364 169627062 -32701285 + L1MA6 LINE L1 358 974 -6592 3638 212 90 49 chr4 169627502 169628730 -32699617 + L1MA6 LINE L1 2110 3408 -4158 1540 247 67 18 chr4 169628913 169629623 -32698724 + L1MA6 LINE L1 3309 4055 -3510 * 10491 185 29 18 chr4 169629604 169632735 -32695612 + L1MA6 LINE L1 4370 7536 -183 2326 115 30 89 chr4 169632735 169633196 -32695151 - Tigger2a DNA MER2_type 0 434 1 10491 185 29 18 chr4 169633196 169633378 -32694969 + L1MA6 LINE L1 7536 7714 -5 27 62 0 0 chr4 169633798 169633846 -32694501 + AT_rich Low_complexity Low_complexity 1 48 0 198 0 0 0 chr4 169634466 169634488 -32693859 + (TATG)n Simple_repeat Simple_repeat 2 23 0 852 281 101 62 chr4 169634488 169635001 -32693346 - L2 LINE L2 -711 2603 2071 23 0 0 0 chr4 169635659 169635682 -32692665 + AT_rich Low_complexity Low_complexity 1 23 0 391 278 125 51 chr4 169636531 169636883 -32691464 + MLT1I LTR MaLR 32 409 0 23 54 0 0 chr4 169637727 169637764 -32690583 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr4 169639956 169639993 -32688354 + AT_rich Low_complexity Low_complexity 1 37 0 288 336 0 0 chr4 169640210 169640314 -32688033 - L1ME3A LINE L1 -9 6161 6058 1597 101 4 9 chr4 169640354 169640581 -32687766 - AluSg/x SINE Alu 0 312 87 730 289 195 34 chr4 169640767 169641238 -32687109 + MLT1G1 LTR MaLR 2 548 -7 341 330 82 26 chr4 169641399 169641632 -32686715 + MLT1G1-int LTR MaLR 293 538 -833 1147 38 0 0 chr4 169642324 169642456 -32685891 + AluY SINE Alu 1 132 -179 319 287 29 69 chr4 169642479 169642653 -32685694 + MLT1G1-int LTR MaLR 1028 1194 -177 513 278 197 27 chr4 169643003 169643414 -32684933 + MLT1F LTR MaLR 75 592 -3 205 329 149 19 chr4 169644414 169644575 -32683772 + L3b LINE CR1 1269 1450 -133 910 266 20 10 chr4 169644650 169644955 -32683392 - Charlie2 DNA MER1_type -4 2858 2551 296 242 39 8 chr4 169644987 169645115 -32683232 - Charlie2 DNA MER1_type -497 2365 2234 889 57 16 0 chr4 169645270 169645394 -32682953 + HERVL-A2 LTR ERVL 5529 5654 0 2881 99 71 0 chr4 169645394 169645817 -32682530 + MLT2A2 LTR ERVL 1 453 0 2008 147 7 0 chr4 169646000 169646307 -32682040 - AluY SINE Alu -2 309 1 7666 23 3 0 chr4 169646596 169647718 -32680629 - L1PA3 LINE L1 -3 6152 5030 768 213 49 29 chr4 169647831 169648075 -32680272 + L1MC2 LINE L1 6088 6336 -8 2044 159 62 32 chr4 169648433 169648961 -32679386 - MLT2A2 LTR ERVL 0 554 1 462 246 239 34 chr4 169649379 169649732 -32678615 - L1ME2 LINE L1 -62 6104 5683 1802 272 47 16 chr4 169649776 169650566 -32677781 + L1MC3 LINE L1 4354 5167 -979 2466 201 30 46 chr4 169650599 169651312 -32677035 - L1 LINE L1 -2300 3846 3146 4844 251 98 23 chr4 169651414 169653485 -32674862 + L1MC3 LINE L1 5372 7673 -170 270 328 67 8 chr4 169653878 169654012 -32674335 - MLT1J LTR MaLR -42 469 328 198 0 0 0 chr4 169654047 169654069 -32674278 + (T)n Simple_repeat Simple_repeat 1 22 0 1138 50 25 6 chr4 169654247 169654408 -32673939 - L1PA7 LINE L1 -1 6153 5990 690 64 58 12 chr4 169654524 169654695 -32673652 + (TA)n Simple_repeat Simple_repeat 2 180 0 912 316 123 63 chr4 169654763 169655947 -32672400 + L2 LINE L2 1560 2814 -500 2223 119 0 0 chr4 169655980 169656290 -32672057 - AluSg SINE Alu 0 310 1 249 270 99 57 chr4 169656318 169656529 -32671818 + L2 LINE L2 3084 3303 -10 581 265 12 29 chr4 169657181 169657351 -32670996 - MER97b DNA MER1_type? -874 179 13 216 193 35 69 chr4 169657613 169657758 -32670589 + (TTATA)n Simple_repeat Simple_repeat 5 144 0 * 231 178 47 59 chr4 169657654 169657823 -32670524 + (TA)n Simple_repeat Simple_repeat 2 168 0 * 273 220 35 46 chr4 169657772 169657945 -32670402 + (TTATA)n Simple_repeat Simple_repeat 5 175 0 247 226 39 50 chr4 169657866 169658047 -32670300 + (CATAT)n Simple_repeat Simple_repeat 2 180 0 * 411 249 72 22 chr4 169658055 169658236 -32670111 - L1MC4a LINE L1 -1897 5911 5722 * 6825 15 4 0 chr4 169658230 169659019 -32669328 - L1PA2 LINE L1 -2 6153 5362 263 228 130 32 chr4 169659030 169659153 -32669194 - L1MC4a LINE L1 -2090 5718 5584 28 0 0 0 chr4 169659420 169659448 -32668899 + AT_rich Low_complexity Low_complexity 1 28 0 224 344 0 32 chr4 169659470 169659563 -32668784 - MER5B DNA MER1_type 0 178 89 1948 114 0 31 chr4 169661474 169661794 -32666553 - AluSx SINE Alu 0 311 1 213 246 0 15 chr4 169661990 169662055 -32666292 + (TAA)n Simple_repeat Simple_repeat 3 66 0 43798 38 1 4 chr4 169662160 169668317 -32660030 - L1PA4 LINE L1 -3 6152 12 4702 239 54 8 chr4 169668354 169670106 -32658241 + L1M4 LINE L1 3696 5524 -743 677 160 0 42 chr4 169670146 169670290 -32658057 - L1MA3 LINE L1 0 6305 6168 607 200 151 40 chr4 169670402 169670627 -32657720 - MER52A LTR ERV1 -39 1716 1467 753 216 58 146 chr4 169670657 169671206 -32657141 - MER52A LTR ERV1 -141 495 278 3795 75 6 4 chr4 169671344 169672194 -32656153 - L1P3 LINE L1 -459 5695 4846 1501 129 0 0 chr4 169672205 169672415 -32655932 - AluSx SINE Alu -101 211 2 306 238 0 133 chr4 169672438 169672619 -32655728 - L1M4 LINE L1 -2183 3963 3807 505 289 74 25 chr4 169672626 169672951 -32655396 - L1M4 LINE L1 -2475 3671 3331 228 271 0 0 chr4 169673015 169673063 -32655284 + L1M4 LINE L1 5552 5599 -585 1339 197 70 30 chr4 169673175 169673505 -32654842 + MER2 DNA MER2_type 1 343 -1 31 44 0 0 chr4 169674593 169674638 -32653709 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr4 169674995 169675017 -32653330 + AT_rich Low_complexity Low_complexity 1 22 0 586 131 85 0 chr4 169675022 169675137 -32653210 + THE1C LTR MaLR 74 211 -206 1323 290 117 9 chr4 169675154 169675766 -32652581 + L1ME3 LINE L1 5318 5987 -175 242 193 88 0 chr4 169675775 169675832 -32652515 + MLT1A2 LTR MaLR 1 62 -312 5818 80 18 12 chr4 169675832 169676657 -32651690 + L1PA10 LINE L1 5338 6167 -1 1169 236 26 38 chr4 169676665 169676978 -32651369 + MLT1A2 LTR MaLR 55 363 -11 477 34 0 0 chr4 169676986 169677045 -32651302 + (TG)n Simple_repeat Simple_repeat 2 60 0 22 80 0 0 chr4 169677191 169677241 -32651106 + AT_rich Low_complexity Low_complexity 1 50 0 3516 285 51 16 chr4 169677970 169679085 -32649262 + L1PA13 LINE L1 54 1406 -5433 * 4134 229 23 96 chr4 169679073 169681113 -32647234 + L1PA13 LINE L1 1756 3701 -3148 285 222 28 0 chr4 169681463 169681535 -32646812 - L1PA13 LINE L1 -3147 3702 3629 5656 236 49 5 chr4 169681546 169683047 -32645300 + L1PA13 LINE L1 3715 5281 -1568 1040 121 58 0 chr4 169684020 169684194 -32644153 + L1MA5A LINE L1 6108 6291 -6 28 0 0 0 chr4 169684385 169684413 -32643934 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 169684459 169684482 -32643865 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 169685426 169685449 -32642898 + AT_rich Low_complexity Low_complexity 1 23 0 202 327 190 33 chr4 169685896 169686107 -32642240 + L2 LINE L2 2734 2977 -337 1746 124 4 15 chr4 169688588 169688855 -32639492 - AluSx SINE Alu -10 302 39 183 308 96 58 chr4 169688935 169689091 -32639256 + MER5A DNA MER1_type 27 188 -1 566 95 57 6 chr4 169689420 169689578 -32638769 + (TA)n Simple_repeat Simple_repeat 2 167 0 399 82 66 8 chr4 169689594 169689716 -32638631 + (TA)n Simple_repeat Simple_repeat 1 129 0 816 300 123 13 chr4 169689835 169690519 -32637828 - Charlie2a DNA MER1_type -1875 987 187 209 374 124 14 chr4 169690559 169690915 -32637432 - L2 LINE L2 -680 2634 2240 * 275 211 0 0 chr4 169690911 169690963 -32637384 + L2 LINE L2 2227 2278 -1036 268 274 0 14 chr4 169691718 169691796 -32636551 + CT-rich Low_complexity Low_complexity 1 76 0 237 372 95 20 chr4 169692271 169692419 -32635928 + MIR3 SINE MIR 20 178 -30 841 204 42 0 chr4 169692544 169692711 -32635636 - MER58B DNA MER1_type 0 341 168 2279 83 3 0 chr4 169693527 169693817 -32634530 - AluY SINE Alu -20 291 1 256 260 248 0 chr4 169693965 169694074 -32634273 - AluYa8 SINE Alu -109 191 121 2081 145 0 0 chr4 169694803 169695113 -32633234 - AluSx SINE Alu -2 310 1 234 245 0 0 chr4 169696579 169696628 -32631719 + L2 LINE L2 3261 3309 -4 295 408 19 5 chr4 169697043 169697249 -32631098 - MIR SINE MIR -47 215 7 12875 160 23 23 chr4 169697516 169699934 -32628413 - Tigger1 DNA MER2_type 0 2418 1 346 331 23 15 chr4 169700193 169700323 -32628024 + L2 LINE L2 2917 3047 -225 348 347 114 5 chr4 169701016 169701235 -32627112 + MIR SINE MIR 20 262 0 22 0 0 0 chr4 169701552 169701574 -32626773 + AT_rich Low_complexity Low_complexity 1 22 0 515 325 56 43 chr4 169701891 169702282 -32626065 - L2 LINE L2 -2396 918 523 279 141 247 12 chr4 169702632 169702717 -32625630 + MER103 DNA DNA 2 106 -60 691 46 0 0 chr4 169702989 169703098 -32625249 - AluY SINE Alu 0 316 208 683 234 13 32 chr4 169703098 169703252 -32625095 - MIR SINE MIR -96 166 16 195 167 0 0 chr4 169703670 169703712 -32624635 + (TG)n Simple_repeat Simple_repeat 2 43 0 261 0 0 0 chr4 169704086 169704115 -32624232 + (TC)n Simple_repeat Simple_repeat 2 30 0 29 60 0 0 chr4 169704409 169704459 -32623888 + AT_rich Low_complexity Low_complexity 1 50 0 1682 181 7 7 chr4 169704548 169704840 -32623507 - AluJb SINE Alu -20 292 1 31 26 0 0 chr4 169705752 169705790 -32622557 + AT_rich Low_complexity Low_complexity 1 38 0 492 172 180 0 chr4 169706149 169706271 -32622076 + Charlie4 DNA MER1_type 1818 1961 0 606 273 66 11 chr4 169706298 169706481 -32621866 - MIR SINE MIR -14 248 56 552 345 79 13 chr4 169708329 169708787 -32619560 + L2 LINE L2 2380 2867 -447 527 272 33 26 chr4 169708793 169709138 -32619209 + LTR52 LTR ERVL 1 402 -19 670 275 63 24 chr4 169710509 169710716 -32617631 + MIR SINE MIR 38 252 -10 48 43 0 0 chr4 169712924 169712993 -32615354 + AT_rich Low_complexity Low_complexity 1 69 0 4925 156 0 0 chr4 169713087 169714187 -32614160 - L1PA16 LINE L1 -9 6860 5756 370 179 0 15 chr4 169714190 169714257 -32614090 - L1PA16 LINE L1 -2060 4789 4724 * 1158 89 33 17 chr4 169714254 169714434 -32613913 - L1MA1 LINE L1 -458 5844 5662 * 8667 223 25 15 chr4 169714429 169715095 -32613252 - L1 LINE L1 -1132 5014 4357 3298 88 27 0 chr4 169715095 169715570 -32612777 + L1PA10 LINE L1 5665 6152 -16 186 43 0 0 chr4 169715580 169715603 -32612744 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 8667 223 25 15 chr4 169715603 169717122 -32611225 - L1 LINE L1 -1797 4349 2794 1873 182 65 14 chr4 169717222 169717590 -32610757 - MSTA LTR MaLR -39 389 3 8987 179 15 6 chr4 169717592 169719229 -32609118 - MSTA-int LTR MaLR 0 1651 1 1919 163 101 0 chr4 169719229 169719616 -32608731 - MSTA LTR MaLR 0 428 3 12426 186 27 19 chr4 169719642 169720694 -32607653 - L1PA16 LINE L1 -3388 3461 2419 2219 109 0 7 chr4 169720694 169720996 -32607351 - AluSq SINE Alu -11 302 3 12426 186 27 19 chr4 169720996 169723485 -32604862 - L1PA16 LINE L1 -4430 2419 1 298 307 94 33 chr4 169724338 169724550 -32603797 - MIR SINE MIR -1 261 37 313 127 25 0 chr4 169725173 169725252 -32603095 + (TG)n Simple_repeat Simple_repeat 2 82 0 280 228 33 33 chr4 169725770 169725862 -32602485 + A-rich Low_complexity Low_complexity 2 93 0 774 236 6 6 chr4 169725878 169726043 -32602304 - FRAM SINE Alu -15 161 1 592 258 43 109 chr4 169727819 169728168 -32600179 - L2 LINE L2 -8 3305 2980 2322 100 10 0 chr4 169728200 169728501 -32599846 - AluSx SINE Alu -7 305 2 190 310 138 11 chr4 169728966 169729053 -32599294 - MIR SINE MIR -116 146 49 342 296 40 8 chr4 169729105 169729230 -32599117 - L2 LINE L2 -1 3312 3184 367 292 151 23 chr4 169729348 169729567 -32598780 - MIR SINE MIR -14 248 2 742 247 13 0 chr4 169729641 169729799 -32598548 + MER58A DNA MER1_type 49 208 -16 637 300 59 8 chr4 169729877 169730114 -32598233 - L2 LINE L2 -354 2960 2712 1344 292 32 3 chr4 169730114 169730484 -32597863 + LTR16A LTR ERVL 1 381 -69 481 282 141 9 chr4 169730572 169730785 -32597562 - L2 LINE L2 -647 2667 2427 302 325 36 54 chr4 169730890 169731056 -32597291 - MLT1J2 LTR MaLR -24 426 264 1539 285 18 74 chr4 169731324 169731942 -32596405 - L2 LINE L2 -969 2345 1763 363 44 0 0 chr4 169732200 169732245 -32596102 + (TG)n Simple_repeat Simple_repeat 2 46 0 1513 185 0 64 chr4 169732665 169732978 -32595369 - AluJo SINE Alu -19 293 1 248 197 0 26 chr4 169735392 169735468 -32592879 + (TATATG)n Simple_repeat Simple_repeat 3 76 0 1666 149 89 19 chr4 169736160 169736476 -32591871 + MER44D DNA MER2_type 1 608 -1 1727 271 80 32 chr4 169736985 169738551 -32589796 - L1ME2 LINE L1 -16 6217 2197 235 262 24 0 chr4 169738608 169738692 -32589655 - L1ME2 LINE L1 -4453 1943 1858 731 250 54 81 chr4 169738694 169738954 -32589393 - L1ME2 LINE L1 -6089 307 55 349 289 74 46 chr4 169738970 169739606 -32588741 - L1ME LINE L1 -4725 1659 1013 1621 154 21 14 chr4 169740027 169740312 -32588035 - Tigger3(Golem) DNA MER2_type 0 3029 2743 12161 204 26 17 chr4 169740320 169741061 -32587286 - L1PBa LINE L1 -1002 5860 5128 195 42 0 0 chr4 169741061 169741085 -32587262 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 12161 204 26 17 chr4 169741085 169743502 -32584845 - L1PBa LINE L1 -1734 5128 2671 5537 235 37 32 chr4 169743529 169746343 -32582004 - L1PBa LINE L1 -4976 1887 9 22 0 0 0 chr4 169747390 169747412 -32580935 + AT_rich Low_complexity Low_complexity 1 22 0 402 307 55 31 chr4 169750150 169750313 -32578034 - MER63A DNA MER1_type -2 208 42 202 329 48 34 chr4 169750724 169750870 -32577477 + L2 LINE L2 2715 2862 -452 321 169 0 0 chr4 169751667 169751726 -32576621 + CT-rich Low_complexity Low_complexity 2 60 0 743 309 82 38 chr4 169752046 169752808 -32575539 + L2 LINE L2 2516 3313 0 182 353 0 0 chr4 169753545 169753596 -32574751 + L2 LINE L2 3204 3254 -18 7257 41 26 1 chr4 169754160 169755035 -32573312 - MER11D LTR ERVK 0 897 1 3478 61 0 0 chr4 169755035 169755477 -32572870 - HERVK11D LTR ERVK 0 7752 7311 189 0 0 0 chr4 169755675 169755696 -32572651 + (TATG)n Simple_repeat Simple_repeat 2 22 0 201 341 51 40 chr4 169756856 169757032 -32571315 + L2 LINE L2 1916 2093 -1221 411 267 8 46 chr4 169757231 169757247 -32571100 + MER94 DNA DNA 9 24 -110 1307 208 46 25 chr4 169757247 169757410 -32570937 - AluJb SINE Alu -22 290 117 237 83 0 0 chr4 169757410 169757446 -32570901 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1307 208 46 25 chr4 169757446 169757566 -32570781 - AluJb SINE Alu -195 117 1 411 267 8 46 chr4 169757566 169757680 -32570667 + MER94 DNA DNA 24 134 0 1867 148 7 0 chr4 169757832 169758136 -32570211 - AluSg SINE Alu -4 306 1 6374 87 18 2 chr4 169758426 169759590 -32568757 - L1PA8 LINE L1 -1 6171 4999 1393 122 30 215 chr4 169761243 169761406 -32566941 - Tigger2 DNA MER2_type 0 2718 2527 2026 117 0 0 chr4 169761406 169761680 -32566667 + AluSx SINE Alu 1 274 -38 279 0 0 0 chr4 169761684 169761715 -32566632 + (TC)n Simple_repeat Simple_repeat 2 32 0 1393 122 30 215 chr4 169761715 169761979 -32566368 - Tigger2 DNA MER2_type -194 2524 2366 275 156 0 0 chr4 169761976 169762021 -32566326 + MER8 DNA MER2_type 195 239 0 * 2127 211 54 8 chr4 169762034 169762513 -32565834 - L1MB5 LINE L1 -26 6148 5648 271 241 19 0 chr4 169762886 169762940 -32565407 + MIR SINE MIR 15 69 -193 410 101 14 0 chr4 169763046 169763115 -32565232 + (TA)n Simple_repeat Simple_repeat 2 71 0 3103 71 43 14 chr4 169763665 169764102 -32564245 - MLT2A2 LTR ERVL -3 450 1 577 194 52 0 chr4 169764106 169764240 -32564107 + L1MA9 LINE L1 6172 6312 0 236 226 16 0 chr4 169764323 169764385 -32563962 + (TA)n Simple_repeat Simple_repeat 2 64 0 182 394 71 11 chr4 169764534 169764816 -32563531 - L2 LINE L2 -920 2394 2096 6302 35 0 0 chr4 169764826 169765594 -32562753 + L1P LINE L1 4245 5012 -1134 2692 158 20 43 chr4 169765696 169766043 -32562304 + L1MA4A LINE L1 5727 6057 -246 1559 11 0 0 chr4 169766043 169766218 -32562129 - AluYb8 SINE Alu 0 318 144 2692 158 20 43 chr4 169766218 169766454 -32561893 + L1MA4A LINE L1 6057 6297 -6 31 0 0 0 chr4 169767903 169767934 -32560413 + AT_rich Low_complexity Low_complexity 1 31 0 318 338 39 13 chr4 169768873 169769027 -32559320 - L1ME4a LINE L1 -12 6109 5952 344 306 65 24 chr4 169770472 169770642 -32557705 - L2 LINE L2 -837 2477 2301 199 370 24 31 chr4 169770643 169770770 -32557577 - L2 LINE L2 -1405 1909 1784 2743 112 7 14 chr4 169771294 169771721 -32556626 - L1M2 LINE L1 -562 5738 5315 12638 114 9 50 chr4 169772035 169774825 -32553522 + L1P3 LINE L1 1 2789 -3672 2451 117 8 11 chr4 169775139 169775515 -32552832 - THE1C LTR MaLR 0 375 1 361 259 54 54 chr4 169776207 169776354 -32551993 + Charlie2a DNA MER1_type 2 148 -2634 229 242 42 63 chr4 169776400 169776495 -32551852 - MLT1J2 LTR MaLR -1 449 357 347 301 36 30 chr4 169776852 169777018 -32551329 + Charlie2a DNA MER1_type 231 397 -2385 406 208 5 112 chr4 169777151 169777348 -32550999 + Charlie2a DNA MER1_type 839 1014 -1848 324 207 46 11 chr4 169777349 169777431 -32550916 + Charlie2a DNA MER1_type 2748 2832 -30 532 330 60 0 chr4 169777431 169777631 -32550716 + LTR50 LTR ERVL 1 212 -583 881 311 32 75 chr4 169777833 169778390 -32549957 + ERVL LTR ERVL 1267 1799 -3965 453 348 85 17 chr4 169778501 169779007 -32549340 + ERVL LTR ERVL 4723 5312 -215 1294 291 134 15 chr4 169779325 169779802 -32548545 + MLT1H LTR MaLR 13 546 -3 1194 164 7 101 chr4 169780082 169780199 -32548148 - L1MA7 LINE L1 -234 6057 5931 2183 70 0 3 chr4 169780199 169780485 -32547862 - L1PA5 LINE L1 -8 6146 5862 1194 164 7 101 chr4 169780485 169780665 -32547682 - L1MA7 LINE L1 -360 5931 5788 979 130 70 35 chr4 169780665 169780894 -32547453 + L1MA7 LINE L1 6054 6291 0 1986 178 15 7 chr4 169781248 169781658 -32546689 - L1MB4 LINE L1 -12 6168 5756 208 377 66 0 chr4 169781676 169781798 -32546549 - L2 LINE L2 -621 2693 2564 22 0 0 0 chr4 169782532 169782554 -32545793 + AT_rich Low_complexity Low_complexity 1 22 0 23 97 0 0 chr4 169782592 169782664 -32545683 + AT_rich Low_complexity Low_complexity 1 72 0 396 0 0 0 chr4 169783798 169783842 -32544505 + (CA)n Simple_repeat Simple_repeat 1 44 0 3342 34 3 0 chr4 169784008 169784395 -32543952 + MER11D LTR ERVK 1 388 -509 3839 48 48 0 chr4 169784408 169784882 -32543465 - MER11D LTR ERVK 0 897 401 193 29 29 29 chr4 169784984 169785019 -32543328 + (TATAA)n Simple_repeat Simple_repeat 5 39 0 333 118 0 0 chr4 169785025 169785076 -32543271 + (CA)n Simple_repeat Simple_repeat 2 52 0 238 339 34 28 chr4 169785123 169785300 -32543047 + L1ME LINE L1 2 179 -5891 23 33 0 0 chr4 169786036 169786066 -32542281 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr4 169786166 169786191 -32542156 + AT_rich Low_complexity Low_complexity 1 25 0 1489 233 87 69 chr4 169788371 169788878 -32539469 + MER97b DNA MER1_type? 49 564 -489 21 36 0 0 chr4 169788884 169788912 -32539435 + AT_rich Low_complexity Low_complexity 1 28 0 2194 118 3 9 chr4 169788968 169789283 -32539064 - AluSq SINE Alu 0 313 1 226 135 77 0 chr4 169789307 169789359 -32538988 + MER97c DNA MER1_type? 1000 1055 -35 2396 111 16 32 chr4 169789617 169789987 -32538360 - THE1B LTR MaLR 0 364 1 9916 110 34 28 chr4 169789987 169791557 -32536790 - THE1B-int LTR MaLR 0 1580 1 2024 171 19 16 chr4 169791557 169791920 -32536427 - THE1B LTR MaLR 0 364 1 197 298 0 0 chr4 169792055 169792102 -32536245 + L2 LINE L2 3201 3247 -25 1326 200 55 21 chr4 169792213 169792597 -32535750 + MER67C LTR ERV1 1 403 -243 328 254 114 0 chr4 169792610 169792724 -32535623 + MER67D LTR ERV1 359 485 -29 1133 57 0 0 chr4 169792816 169792957 -32535390 + MER11D LTR ERVK 1 141 -756 38683 83 11 7 chr4 169793059 169798174 -32530173 + HERVL LTR ERVL 99 5234 -420 23534 150 17 24 chr4 169798183 169800196 -32528151 + L1P3 LINE L1 10 2035 -4426 261 0 0 0 chr4 169800196 169800225 -32528122 + (TG)n Simple_repeat Simple_repeat 2 30 0 7500 35 39 0 chr4 169800225 169801194 -32527153 - L1PA5 LINE L1 -13 6141 5164 23534 150 17 24 chr4 169801194 169801871 -32526476 + L1P3 LINE L1 2034 2714 -3747 243 0 0 0 chr4 169801871 169801898 -32526449 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 23534 150 17 24 chr4 169801898 169804285 -32524062 + L1P3 LINE L1 2714 5105 -1356 2289 221 9 7 chr4 169804287 169804848 -32523499 - L1 LINE L1 -1821 4389 3828 380 312 61 28 chr4 169804942 169805189 -32523158 - L1 LINE L1 -5852 289 35 513 289 87 19 chr4 169805843 169806051 -32522296 - MIR SINE MIR -26 236 15 35 71 0 0 chr4 169809938 169810008 -32518339 + AT_rich Low_complexity Low_complexity 1 70 0 2495 45 0 0 chr4 169810908 169811200 -32517147 + AluYb8 SINE Alu 25 316 -2 311 306 32 73 chr4 169815101 169815184 -32513163 - MIR3 SINE MIR -27 181 103 2306 96 41 9 chr4 169815184 169815528 -32512819 - THE1A LTR MaLR 0 355 1 311 306 32 73 chr4 169815528 169815568 -32512779 - MIR3 SINE MIR -105 103 63 203 328 0 0 chr4 169816218 169816282 -32512065 - MIR SINE MIR 0 262 199 293 328 38 8 chr4 169817836 169817967 -32510380 - LTR16C LTR ERVL -9 482 348 226 343 80 22 chr4 169818034 169818171 -32510176 - LTR16C LTR ERVL -250 241 97 392 255 192 22 chr4 169818360 169818725 -32509622 - L1MC5 LINE L1 -210 7751 7325 512 212 58 78 chr4 169818740 169819033 -32509314 - L1MC5 LINE L1 -752 7209 6923 437 206 62 69 chr4 169819121 169819281 -32509066 - L1MC5 LINE L1 -1190 6771 6613 23 33 0 0 chr4 169819316 169819346 -32509001 + AT_rich Low_complexity Low_complexity 1 30 0 246 195 0 0 chr4 169819531 169819572 -32508775 - MER81 DNA DNA -29 85 45 1459 288 98 31 chr4 169819798 169820413 -32507934 + L2 LINE L2 1821 2476 -838 338 123 113 57 chr4 169820413 169820519 -32507828 - L1MB8 LINE L1 0 6178 6067 7354 239 73 23 chr4 169820667 169823261 -32505086 - L1M4 LINE L1 -1232 5725 3003 419 276 72 13 chr4 169823275 169823575 -32504772 - L1MEc LINE L1 -3798 3159 2881 1032 249 92 98 chr4 169823707 169824188 -32504159 - L1MEc LINE L1 -6377 482 5 788 311 68 29 chr4 169824197 169824606 -32503741 + L2 LINE L2 2476 2900 -414 363 23 0 0 chr4 169825318 169825362 -32502985 + (TG)n Simple_repeat Simple_repeat 2 45 0 22 88 0 0 chr4 169826159 169826216 -32502131 + AT_rich Low_complexity Low_complexity 1 57 0 204 331 94 8 chr4 169826459 169826586 -32501761 + L2 LINE L2 3176 3313 0 226 388 36 16 chr4 169826664 169826968 -32501379 + L2 LINE L2 1313 1622 -1692 521 259 68 80 chr4 169827119 169827455 -32500892 + MER46C DNA MER2_type 7 338 0 337 336 103 12 chr4 169827476 169827729 -32500618 + L2 LINE L2 1777 2052 -1262 29 0 0 0 chr4 169827736 169827765 -32500582 + AT_rich Low_complexity Low_complexity 1 29 0 7653 23 0 4 chr4 169827765 169828793 -32499554 - L1PA4 LINE L1 -3 6152 5126 753 352 33 22 chr4 169828902 169829266 -32499081 + L2 LINE L2 2946 3313 0 2269 196 63 32 chr4 169832286 169832858 -32495489 + Tigger7 DNA MER2_type 7 2481 -6 2357 66 0 3 chr4 169832974 169833279 -32495068 + AluY SINE Alu 1 304 -7 1725 192 26 40 chr4 169833777 169834126 -32494221 - MER2 DNA MER2_type 0 345 2 377 253 60 60 chr4 169834338 169834488 -32493859 - LTR52 LTR ERVL -210 211 62 5261 145 23 6 chr4 169834526 169835492 -32492855 - L1PA16 LINE L1 -12 6154 5172 305 228 22 0 chr4 169836169 169836261 -32492086 + (TA)n Simple_repeat Simple_repeat 2 95 0 335 270 10 20 chr4 169836281 169836381 -32491966 - L1MC4 LINE L1 -1330 6712 6614 26 64 0 0 chr4 169837668 169837715 -32490632 + AT_rich Low_complexity Low_complexity 1 47 0 21 71 0 0 chr4 169838433 169838475 -32489872 + AT_rich Low_complexity Low_complexity 1 42 0 430 178 0 0 chr4 169838582 169838655 -32489692 - MLT2B2 LTR ERVL -442 73 1 1360 180 54 10 chr4 169838660 169838954 -32489393 - ERVL-B2 LTR ERVL -25 5739 5433 9009 191 11 15 chr4 169839071 169840730 -32487617 - ERVL LTR ERVL -1954 3810 2158 1167 225 22 0 chr4 169840729 169840956 -32487391 - ERVL LTR ERVL -3759 2005 1774 * 1352 198 96 51 chr4 169840982 169841356 -32486991 - MSTD LTR MaLR 0 396 6 4597 221 29 25 chr4 169841357 169842402 -32485945 - ERVL LTR ERVL -3989 1775 727 1488 271 74 7 chr4 169842448 169842883 -32485464 - ERVL LTR ERVL -5182 582 119 542 234 12 48 chr4 169842883 169843050 -32485297 - MLT2B1 LTR ERVL -357 163 3 318 328 109 58 chr4 169843300 169843815 -32484532 - HAL1 LINE L1 -1061 1446 906 29 28 0 0 chr4 169845249 169845285 -32483062 + AT_rich Low_complexity Low_complexity 1 36 0 1139 220 17 1 chr4 169846492 169846812 -32481535 + MLT1A1 LTR MaLR 6 365 0 22 0 0 0 chr4 169847077 169847099 -32481248 + AT_rich Low_complexity Low_complexity 1 22 0 395 372 20 7 chr4 169847182 169847330 -32481017 + MER5A DNA MER1_type 39 188 -1 2827 95 37 9 chr4 169848223 169848264 -32480083 - MLT2A1 LTR ERVL 0 444 406 261 0 0 0 chr4 169848264 169848293 -32480054 + (TA)n Simple_repeat Simple_repeat 1 29 0 279 0 0 0 chr4 169848302 169848333 -32480014 + (CA)n Simple_repeat Simple_repeat 2 32 0 2827 95 37 9 chr4 169848333 169848713 -32479634 - MLT2A1 LTR ERVL -45 399 1 8318 195 23 30 chr4 169848748 169851481 -32476866 - L1PA13 LINE L1 0 6163 3441 236 296 19 28 chr4 169851981 169852089 -32476258 + L1ME LINE L1 5482 5588 -533 22 0 0 0 chr4 169852178 169852200 -32476147 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 169853028 169853052 -32475295 + AT_rich Low_complexity Low_complexity 1 24 0 428 277 28 7 chr4 169853106 169853247 -32475100 - MIR SINE MIR -36 226 83 198 167 0 0 chr4 169853299 169853335 -32475012 + (TG)n Simple_repeat Simple_repeat 2 37 0 342 241 128 15 chr4 169853339 169853472 -32474875 + L1MC4 LINE L1 7895 8042 0 4419 190 77 34 chr4 169853636 169854264 -32474083 + L1MC1 LINE L1 5186 5883 -450 2364 66 3 0 chr4 169854264 169854568 -32473779 + AluY SINE Alu 1 305 -6 4419 190 77 34 chr4 169854568 169855040 -32473307 + L1MC1 LINE L1 5883 6333 0 2883 151 77 5 chr4 169855324 169855880 -32472467 - L1MA4A LINE L1 -5 6298 5703 24 85 0 0 chr4 169857071 169857130 -32471217 + AT_rich Low_complexity Low_complexity 1 59 0 200 204 41 0 chr4 169857543 169857592 -32470755 + (TAAA)n Simple_repeat Simple_repeat 1 51 0 236 289 31 0 chr4 169857770 169857867 -32470480 + L1MC4 LINE L1 6620 6719 -1323 206 237 10 0 chr4 169857871 169857968 -32470379 + (TA)n Simple_repeat Simple_repeat 1 98 0 324 305 79 23 chr4 169858304 169858481 -32469866 + MER5A DNA MER1_type 2 188 -1 15911 109 8 3 chr4 169859356 169862561 -32465786 - L1PA7 LINE L1 -2 6152 2929 264 333 113 11 chr4 169863890 169864067 -32464280 - MIR SINE MIR -17 245 51 182 418 47 12 chr4 169864679 169864849 -32463498 - MER5B DNA MER1_type -1 177 2 794 327 54 15 chr4 169865513 169865920 -32462427 + L2 LINE L2 2431 2853 -461 337 311 0 0 chr4 169866630 169866720 -32461627 + L1MC4 LINE L1 6614 6703 -1339 2110 96 3 10 chr4 169866988 169867280 -32461067 + AluSg SINE Alu 1 290 -20 315 207 11 83 chr4 169917629 169917764 -32410583 - HERVL40 LTR ERVL -2168 1614 743 431 151 11 0 chr4 169918015 169918108 -32410239 + CT-rich Low_complexity Low_complexity 1 94 0 306 359 60 16 chr4 169919427 169919675 -32408672 + L2 LINE L2 1090 1348 -1966 192 369 25 33 chr4 169920034 169920156 -32408191 + L2 LINE L2 1789 1909 -1405 343 306 65 24 chr4 169920157 169920327 -32408020 + L2 LINE L2 2301 2477 -837 1048 91 22 13 chr4 169921414 169921647 -32406700 + (TAGA)n Simple_repeat Simple_repeat 1 235 0 2355 176 88 4 chr4 169921860 169922325 -32406022 - MLT1D LTR MaLR 0 505 2 21 0 0 0 chr4 169922634 169922655 -32405692 + AT_rich Low_complexity Low_complexity 1 21 0 257 333 113 11 chr4 169924164 169924341 -32404006 - MIR SINE MIR -17 245 51 793 322 54 15 chr4 169925787 169926194 -32402153 + L2 LINE L2 2431 2853 -461 825 124 0 0 chr4 169926900 169927029 -32401318 + (TA)n Simple_repeat Simple_repeat 1 129 0 2159 92 3 10 chr4 169927280 169927572 -32400775 + AluSg SINE Alu 1 290 -20 2985 68 5 5 chr4 169927916 169928300 -32400047 - MER11D LTR ERVK -513 384 1 1326 212 68 18 chr4 169928392 169928903 -32399444 - MER67C LTR ERV1 -29 485 1 197 298 0 0 chr4 169929014 169929061 -32399286 - L2 LINE L2 -25 3247 3201 2024 171 19 16 chr4 169929196 169929559 -32398788 + THE1B LTR MaLR 1 364 0 9988 109 34 28 chr4 169929559 169931129 -32397218 + THE1B-int LTR MaLR 1 1580 0 2396 111 16 32 chr4 169931129 169931499 -32396848 + THE1B LTR MaLR 1 364 0 233 135 77 0 chr4 169931757 169931809 -32396538 - MER97a DNA MER1_type? -35 859 804 2185 122 3 0 chr4 169931833 169932145 -32396202 + AluSq SINE Alu 1 313 0 21 36 0 0 chr4 169932202 169932230 -32396117 + AT_rich Low_complexity Low_complexity 1 28 0 1541 238 84 67 chr4 169932236 169932757 -32395590 - MER97b DNA MER1_type? -489 564 35 25 0 0 0 chr4 169934923 169934948 -32393399 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr4 169935048 169935078 -32393269 + AT_rich Low_complexity Low_complexity 1 30 0 257 333 34 28 chr4 169935814 169935991 -32392356 - L1ME LINE L1 -5891 179 2 264 122 0 0 chr4 169936038 169936079 -32392268 + (TG)n Simple_repeat Simple_repeat 2 42 0 3423 49 54 0 chr4 169936194 169936621 -32391726 + MER11D LTR ERVK 448 897 0 3316 34 3 0 chr4 169936634 169937021 -32391326 - MER11D LTR ERVK -509 388 1 252 0 0 0 chr4 169937187 169937215 -32391132 + (TG)n Simple_repeat Simple_repeat 1 28 0 23 97 0 0 chr4 169938348 169938420 -32389927 + AT_rich Low_complexity Low_complexity 1 72 0 22 0 0 0 chr4 169938458 169938480 -32389867 + AT_rich Low_complexity Low_complexity 1 22 0 210 377 66 0 chr4 169939214 169939336 -32389011 + L2 LINE L2 2564 2693 -621 2000 178 15 7 chr4 169939354 169939764 -32388583 + L1MB4 LINE L1 5756 6168 -12 994 130 70 35 chr4 169940118 169940348 -32387999 - L1MA7 LINE L1 0 6291 6054 1183 164 7 107 chr4 169940348 169940529 -32387818 + L1MA7 LINE L1 5789 5930 -361 2166 70 0 3 chr4 169940529 169940813 -32387534 + L1PA5 LINE L1 5862 6146 -8 1183 164 7 107 chr4 169940813 169940930 -32387417 + L1MA7 LINE L1 5930 6057 -234 1294 291 134 15 chr4 169941210 169941687 -32386660 - MLT1H LTR MaLR -3 546 13 2488 114 8 11 chr4 169942055 169942431 -32385916 - THE1C LTR MaLR 0 375 1 361 259 54 54 chr4 169943123 169943270 -32385077 + Charlie2a DNA MER1_type 2 148 -2634 347 301 36 30 chr4 169943768 169943934 -32384413 + Charlie2a DNA MER1_type 231 397 -2385 406 208 5 112 chr4 169944067 169944264 -32384083 + Charlie2a DNA MER1_type 839 1014 -1848 324 207 46 11 chr4 169944265 169944347 -32384000 + Charlie2a DNA MER1_type 2748 2832 -30 532 330 60 0 chr4 169944347 169944547 -32383800 + LTR50 LTR ERVL 1 212 -583 867 312 32 75 chr4 169944749 169945306 -32383041 + ERVL LTR ERVL 1267 1799 -3965 436 350 85 17 chr4 169945417 169945923 -32382424 + ERVL LTR ERVL 4723 5312 -215 632 263 300 7 chr4 169946324 169946624 -32381723 + LTR50 LTR ERVL 93 480 -315 1742 225 76 11 chr4 169946885 169947346 -32381001 + MLT1F1 LTR MaLR 60 558 -9 222 91 0 0 chr4 169947471 169947504 -32380843 + (TC)n Simple_repeat Simple_repeat 1 33 0 1884 202 44 7 chr4 169947916 169948327 -32380020 - MSTB LTR MaLR 0 426 1 220 87 29 43 chr4 169948547 169948616 -32379731 + (TA)n Simple_repeat Simple_repeat 2 69 0 218 286 36 0 chr4 169949295 169949379 -32378968 + (TCTCTG)n Simple_repeat Simple_repeat 4 90 0 281 113 62 10 chr4 169949462 169949559 -32378788 + (TA)n Simple_repeat Simple_repeat 2 103 0 326 191 67 5 chr4 169949565 169949677 -32378670 + L1MC4 LINE L1 1994 6983 -1339 431 279 40 55 chr4 169949833 169949957 -32378390 + L1ME1 LINE L1 5902 6023 -143 2282 81 0 7 chr4 169949957 169950267 -32378080 - AluY SINE Alu -3 308 1 431 279 40 55 chr4 169950267 169950343 -32378004 + L1ME1 LINE L1 6023 6099 -67 936 168 67 67 chr4 169950951 169951160 -32377187 - AluJo SINE Alu -101 211 3 345 345 79 0 chr4 169951596 169951761 -32376586 + MIR SINE MIR 57 234 -28 40 21 0 0 chr4 169951834 169951881 -32376466 + AT_rich Low_complexity Low_complexity 1 47 0 24 32 0 0 chr4 169952060 169952091 -32376256 + AT_rich Low_complexity Low_complexity 1 31 0 1293 246 86 35 chr4 169952295 169952788 -32375559 - MER39 LTR ERV1 0 707 6 22 56 0 0 chr4 169952836 169952872 -32375475 + AT_rich Low_complexity Low_complexity 1 36 0 183 162 0 0 chr4 169952996 169953033 -32375314 + A-rich Low_complexity Low_complexity 3 39 0 236 206 15 29 chr4 169953850 169953918 -32374429 + L1MC/D LINE L1 5707 5773 -2035 839 165 0 0 chr4 169954057 169954190 -32374157 + THE1B LTR MaLR 1 133 -231 467 17 17 0 chr4 169954506 169954566 -32373781 + (TA)n Simple_repeat Simple_repeat 2 62 0 2323 78 10 0 chr4 169959352 169959658 -32368689 - AluY SINE Alu -2 309 1 2123 123 7 0 chr4 169959966 169960267 -32368080 + AluSp SINE Alu 1 303 -10 506 228 30 66 chr4 169961601 169961768 -32366579 - L1M4b LINE L1 -6639 220 60 22 0 0 0 chr4 169962155 169962177 -32366170 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr4 169963541 169963578 -32364769 + AT_rich Low_complexity Low_complexity 1 37 0 1384 172 53 103 chr4 169963650 169964086 -32364261 + L1MA9 LINE L1 5858 6271 -41 1583 277 113 14 chr4 169964416 169965424 -32362923 - L1MDa LINE L1 -3863 2677 1573 200 197 0 16 chr4 169965424 169965485 -32362862 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 330 322 41 20 chr4 169965533 169965828 -32362519 - L1MDa LINE L1 -4981 1559 1259 1021 73 7 0 chr4 169967951 169968087 -32360260 + THE1B LTR MaLR 228 364 0 2077 321 155 10 chr4 169968298 169969516 -32358831 + L2 LINE L2 35 1429 -1885 7541 193 125 13 chr4 169969531 169971109 -32357238 - MER52A LTR ERV1 0 1755 1 890 305 90 9 chr4 169971328 169971662 -32356685 + L2 LINE L2 1807 2167 -1147 779 318 71 7 chr4 169971667 169971947 -32356400 + MLT1H LTR MaLR 1 298 -251 21 0 0 0 chr4 169972704 169972725 -32355622 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 169972814 169972844 -32355503 + AT_rich Low_complexity Low_complexity 1 30 0 1946 98 11 0 chr4 169973558 169973823 -32354524 - AluY SINE Alu -12 299 32 288 130 0 0 chr4 169974645 169974691 -32353656 + (TA)n Simple_repeat Simple_repeat 2 47 0 336 24 0 0 chr4 169975360 169975401 -32352946 + (TG)n Simple_repeat Simple_repeat 2 42 0 21 36 0 0 chr4 169975427 169975455 -32352892 + AT_rich Low_complexity Low_complexity 1 28 0 262 293 0 0 chr4 169975458 169975540 -32352807 + L1MC4 LINE L1 6615 6696 -1346 266 50 25 0 chr4 169975955 169975995 -32352352 + (TA)n Simple_repeat Simple_repeat 2 42 0 699 216 10 26 chr4 169976148 169976315 -32352032 + L1MB8 LINE L1 5468 5637 -543 1935 190 61 8 chr4 169976316 169976695 -32351652 - MSTB LTR MaLR -26 400 2 1444 194 62 29 chr4 169976695 169977081 -32351266 + L1MB8 LINE L1 5687 6085 -93 895 253 94 40 chr4 169977085 169977480 -32350867 - LTR52 LTR ERVL -5 416 1 342 237 0 10 chr4 169977480 169977577 -32350770 + L1MB8 LINE L1 6081 6176 -2 1592 272 70 17 chr4 169977579 169978222 -32350125 + L1ME2 LINE L1 5478 6154 -10 223 330 110 57 chr4 169979976 169980185 -32348162 + L2 LINE L2 7 226 -3088 1178 302 107 80 chr4 169980302 169980535 -32347812 + L2 LINE L2 2152 2377 -936 2009 112 0 0 chr4 169980535 169980802 -32347545 - AluSg SINE Alu -12 298 32 1178 302 107 80 chr4 169980802 169981144 -32347203 + L2 LINE L2 2377 2708 -605 3329 120 10 0 chr4 169981144 169981652 -32346695 + MER75 DNA T2_type 2 514 0 1178 302 107 80 chr4 169981652 169981669 -32346678 + L2 LINE L2 2708 2723 -590 22 0 0 0 chr4 169981669 169981691 -32346656 + AT_rich Low_complexity Low_complexity 1 22 0 1178 302 107 80 chr4 169981691 169981711 -32346636 + L2 LINE L2 2723 2741 -572 1858 131 0 4 chr4 169981711 169981986 -32346361 - AluSx SINE Alu -30 282 9 1178 302 107 80 chr4 169981986 169982463 -32345884 + L2 LINE L2 2741 3300 -13 521 319 58 26 chr4 169982598 169982824 -32345523 + MIR SINE MIR 5 237 -25 197 316 34 68 chr4 169983108 169983189 -32345158 + MIR SINE MIR 100 177 -85 1865 217 75 49 chr4 169983189 169983826 -32344521 - MLT1E1 LTR MaLR 0 654 1 197 316 34 68 chr4 169983826 169983861 -32344486 + MIR SINE MIR 177 212 -50 22 35 0 0 chr4 169985697 169985726 -32342621 + AT_rich Low_complexity Low_complexity 1 29 0 622 278 93 36 chr4 169985973 169986329 -32342018 - L1ME3A LINE L1 -117 6053 5678 696 285 105 18 chr4 169986425 169986863 -32341484 - L1ME3A LINE L1 -1289 4857 4382 386 296 11 51 chr4 169987049 169987225 -32341122 - L1ME3A LINE L1 -1939 4207 4039 2174 200 69 11 chr4 169987326 169987790 -32340557 + MLT1F1 LTR MaLR 77 567 0 24 77 0 0 chr4 169988340 169988392 -32339955 + AT_rich Low_complexity Low_complexity 1 52 0 409 300 144 20 chr4 169988565 169989011 -32339336 + L1ME LINE L1 5318 5819 -302 582 307 60 19 chr4 169989173 169989388 -32338959 + MLT1H LTR MaLR 83 306 -243 272 238 48 0 chr4 169989474 169989537 -32338810 + MLT1H LTR MaLR 456 521 -28 2202 123 0 0 chr4 169989854 169990155 -32338192 - AluSx SINE Alu -11 301 1 239 284 95 11 chr4 169990173 169990268 -32338079 + LTR68 LTR ERV1 58 160 -580 661 312 52 4 chr4 169990620 169990889 -32337458 - HERVL68 LTR ERVL -3 5527 5246 312 250 28 32 chr4 169990911 169991071 -32337276 - HERVL68 LTR ERVL -254 2783 2724 1052 236 111 54 chr4 169991163 169991570 -32336777 - HERVL68 LTR ERVL -2431 3099 2670 1689 181 49 22 chr4 169993153 169993518 -32334829 - THE1C LTR MaLR 0 375 1 23815 169 27 17 chr4 169993874 169994626 -32333721 - L1PA10 LINE L1 -2 7604 6861 2316 80 0 17 chr4 169994626 169994928 -32333419 - AluY SINE Alu -14 297 1 23815 169 27 17 chr4 169994928 169999613 -32328734 - L1PA10 LINE L1 -745 6861 1327 2038 146 3 0 chr4 169999613 169999907 -32328440 + AluSx SINE Alu 1 295 -17 23815 169 27 17 chr4 169999907 170000274 -32328073 - L1PA10 LINE L1 -6279 1327 965 256 273 0 0 chr4 170000276 170000331 -32328016 - AluS SINE Alu -241 59 5 886 196 0 62 chr4 170000341 170000565 -32327782 - L1 LINE L1 -2361 4021 3812 * 5337 26 0 0 chr4 170000563 170001211 -32327136 - L1P LINE L1 -3159 2987 2340 17411 43 0 0 chr4 170001228 170004161 -32324186 + L1PA4 LINE L1 3220 6154 -1 1225 216 71 18 chr4 170004180 170004702 -32323645 - L1 LINE L1 -3633 2749 2201 1332 287 59 37 chr4 170004749 170005702 -32322645 - L1 LINE L1 -4289 2093 1029 1713 115 51 0 chr4 170005704 170005957 -32322390 - AluY SINE Alu -4 307 42 627 265 107 90 chr4 170005963 170006431 -32321916 - LTR33A LTR ERVL -46 477 2 797 314 114 31 chr4 170007539 170008151 -32320196 + MLT2F LTR ERVL 1 663 0 701 347 27 39 chr4 170008391 170008803 -32319544 + ERVL-F LTR ERVL 282 688 -5076 332 311 44 15 chr4 170008845 170008980 -32319367 + ERVL-F LTR ERVL 828 966 -4798 505 268 14 70 chr4 170009178 170009391 -32318956 + ERVL-F LTR ERVL 1201 1401 -4253 1751 142 10 24 chr4 170009402 170009690 -32318657 - THE1B LTR MaLR -6 358 75 1931 294 103 27 chr4 170009691 170010551 -32317796 + ERVL-F LTR ERVL 1981 2906 -2858 1478 296 71 25 chr4 170010547 170011411 -32316936 + ERVL-F LTR ERVL 3685 4602 -883 * 2533 177 63 47 chr4 170011411 170012187 -32316160 - L1MA5 LINE L1 -191 6109 5254 730 139 26 98 chr4 170012198 170012392 -32315955 + L1MA9 LINE L1 6133 6312 0 772 172 7 21 chr4 170012796 170012941 -32315406 + MLT1A1 LTR MaLR 10 152 -213 614 130 40 0 chr4 170012947 170013047 -32315300 + MLT1A1 LTR MaLR 267 370 -4 623 343 33 6 chr4 170013058 170013423 -32314924 + ERVL-F LTR ERVL 5018 5392 -262 388 181 28 0 chr4 170013770 170013842 -32314505 + MLT2B1 LTR ERVL 6 79 -549 778 349 52 30 chr4 170014078 170014577 -32313770 - L2 LINE L2 0 3313 2804 * 1019 313 63 19 chr4 170014573 170015001 -32313346 - L2 LINE L2 -1588 1726 1280 2197 129 0 3 chr4 170015039 170015349 -32312998 + AluSx SINE Alu 1 309 -3 441 308 50 44 chr4 170015367 170015549 -32312798 - MER5A DNA MER1_type -5 184 2 1897 132 35 0 chr4 170017050 170017339 -32311008 + AluY SINE Alu 1 299 -12 341 306 128 41 chr4 170017543 170018059 -32310288 - L1M4 LINE L1 -2213 3933 3373 466 359 109 14 chr4 170018394 170018965 -32309382 - L1M4 LINE L1 -3132 3014 2390 2245 145 13 11 chr4 170019538 170019917 -32308430 - L1MA4A LINE L1 -256 6047 5668 539 315 61 5 chr4 170020346 170020559 -32307788 - LTR16B LTR ERVL 0 464 240 3349 265 72 15 chr4 170020567 170021764 -32306583 - L1MCb LINE L1 -1278 5286 4022 1524 251 49 33 chr4 170021764 170022190 -32306157 + MLT2B1 LTR ERVL 69 501 -19 1435 246 113 13 chr4 170022190 170022817 -32305530 - L1MCb LINE L1 -2974 3590 2901 * 2908 259 53 35 chr4 170022796 170024108 -32304239 - L1MCb LINE L1 -4852 1193 5 305 302 93 16 chr4 170024373 170024502 -32303845 + L2 LINE L2 3166 3304 -9 181 257 171 50 chr4 170024814 170024954 -32303393 + MIR SINE MIR 96 252 -10 561 240 233 94 chr4 170025219 170025653 -32302694 + L2 LINE L2 2820 3313 0 1030 206 112 69 chr4 170026486 170026835 -32301512 + MLT2D LTR ERVL 1 364 -50 195 333 167 20 chr4 170026953 170027055 -32301292 + L2 LINE L2 3197 3313 0 23 33 0 0 chr4 170028303 170028333 -32300014 + AT_rich Low_complexity Low_complexity 1 30 0 1292 233 138 93 chr4 170028547 170029329 -32299018 - LTR1B LTR ERV1 -17 1003 1 511 263 77 65 chr4 170029735 170030058 -32298289 - L2 LINE L2 0 3313 2987 420 232 32 0 chr4 170030144 170030239 -32298108 + MER5A DNA MER1_type 49 146 -43 280 282 23 8 chr4 170030714 170030845 -32297502 + L1MC4a LINE L1 7043 7175 -633 2143 108 10 0 chr4 170031381 170031669 -32296678 - AluSg SINE Alu -19 291 1 29 0 0 0 chr4 170031842 170031871 -32296476 + AT_rich Low_complexity Low_complexity 1 29 0 267 311 72 19 chr4 170032253 170032462 -32295885 + L1ME3A LINE L1 4936 5155 -991 381 292 75 28 chr4 170032524 170032907 -32295440 + L1ME3A LINE L1 5238 5649 -521 349 357 66 6 chr4 170032910 170033092 -32295255 + L1ME3A LINE L1 5678 5870 -300 297 0 0 0 chr4 170033320 170033353 -32294994 + (TA)n Simple_repeat Simple_repeat 2 34 0 1721 142 82 37 chr4 170033512 170033865 -32294482 - THE1C LTR MaLR -6 369 1 360 43 0 0 chr4 170034042 170034088 -32294259 + (TG)n Simple_repeat Simple_repeat 2 47 0 230 239 0 0 chr4 170034466 170034533 -32293814 + HAL1b LINE L1 684 750 -598 1069 276 85 79 chr4 170034993 170035216 -32293131 + L2 LINE L2 1200 1420 -1894 1832 172 3 3 chr4 170035216 170035513 -32292834 - AluJb SINE Alu -15 297 1 1069 276 85 79 chr4 170035513 170035949 -32292398 + L2 LINE L2 1420 1863 -1451 366 299 52 39 chr4 170035954 170036108 -32292239 + L2 LINE L2 1992 2147 -1167 469 319 32 40 chr4 170036113 170036364 -32291983 + L2 LINE L2 3062 3310 -3 2256 112 0 0 chr4 170036689 170036985 -32291362 + AluSg SINE Alu 1 296 -14 22 56 0 0 chr4 170037386 170037422 -32290925 + AT_rich Low_complexity Low_complexity 1 36 0 23 86 0 0 chr4 170037649 170037707 -32290640 + AT_rich Low_complexity Low_complexity 1 58 0 24 32 0 0 chr4 170038469 170038500 -32289847 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr4 170038784 170038815 -32289532 + AT_rich Low_complexity Low_complexity 1 31 0 544 264 45 5 chr4 170039376 170039592 -32288755 - L1ME LINE L1 -616 5550 5329 406 307 113 51 chr4 170039614 170039985 -32288362 - L1ME LINE L1 -868 5278 4885 857 206 122 93 chr4 170040305 170040683 -32287664 + MLT2C1 LTR ERVL 1 389 -8 192 77 0 0 chr4 170040792 170040818 -32287529 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 7542 26 0 0 chr4 170041517 170042711 -32285636 - L1PA3 LINE L1 -3 6152 4978 1387 177 90 11 chr4 170042849 170043115 -32285232 + AluJo SINE Alu 1 287 -25 21 71 0 0 chr4 170044138 170044180 -32284167 + AT_rich Low_complexity Low_complexity 1 42 0 1107 187 0 25 chr4 170044367 170044549 -32283798 + AluJb SINE Alu 85 262 -53 2957 113 106 0 chr4 170044549 170045002 -32283345 - MER61D LTR ERV1 0 501 1 1107 187 0 25 chr4 170045002 170045055 -32283292 + AluJb SINE Alu 262 315 0 22 0 0 0 chr4 170045137 170045159 -32283188 + AT_rich Low_complexity Low_complexity 1 22 0 2170 135 0 0 chr4 170045405 170045716 -32282631 + AluSx SINE Alu 1 311 -1 22 35 0 0 chr4 170045723 170045752 -32282595 + AT_rich Low_complexity Low_complexity 1 29 0 700 342 82 15 chr4 170046110 170046737 -32281610 - L2 LINE L2 0 3313 2638 4438 114 98 100 chr4 170046737 170048116 -32280231 + pTR5 LTR ERV1 743 2433 -5 881 315 82 31 chr4 170048117 170048542 -32279805 - L2 LINE L2 -666 2648 2202 1250 317 194 20 chr4 170048542 170049472 -32278875 - L2 LINE L2 -1340 1974 884 24 53 0 0 chr4 170049540 170049578 -32278769 + AT_rich Low_complexity Low_complexity 1 38 0 243 0 0 0 chr4 170049779 170049806 -32278541 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 351 0 0 0 chr4 170049805 170049844 -32278503 + (TA)n Simple_repeat Simple_repeat 1 39 0 3850 169 7 24 chr4 170051264 170051967 -32276380 - MER4D LTR ERV1 0 903 213 523 215 0 0 chr4 170051965 170052083 -32276264 + HSAT4 Satellite centromeric 1 118 -2 * 1133 188 14 24 chr4 170052081 170052294 -32276053 - MER4D LTR ERV1 -692 211 1 4222 114 22 0 chr4 170052331 170052952 -32275395 + MER41B LTR ERV1 1 635 0 1847 145 28 0 chr4 170052952 170053241 -32275106 + MER41B-int LTR ERV1 1 297 -5649 501 191 122 35 chr4 170053246 170053361 -32274986 + MER4D LTR ERV1 88 212 -660 * 534 204 0 0 chr4 170053359 170053477 -32274870 - HSAT4 Satellite centromeric -2 118 1 * 1065 184 4 68 chr4 170053475 170053744 -32274603 + MER4D LTR ERV1 213 472 -400 3366 161 80 13 chr4 170053744 170054867 -32273480 + MER41B-int LTR ERV1 357 1607 -4339 942 192 0 0 chr4 170054855 170055027 -32273320 + MER41B-int LTR ERV1 1846 2017 -3929 * 3148 140 14 10 chr4 170055023 170055754 -32272593 + MER41B-int LTR ERV1 2167 2946 -3000 * 10586 129 57 36 chr4 170055743 170056137 -32272210 + MER41B-int LTR ERV1 1910 2294 -3652 1948 142 3 7 chr4 170056137 170056426 -32271921 + AluSc SINE Alu 6 293 -16 10586 129 57 36 chr4 170056426 170058388 -32269959 + MER41B-int LTR ERV1 2294 5943 -3 4109 119 11 0 chr4 170058390 170059018 -32269329 + MER41B LTR ERV1 1 635 0 257 279 0 51 chr4 170059856 170059935 -32268412 - L2 LINE L2 -1 3271 3197 412 301 23 36 chr4 170060853 170061072 -32267275 + L1ME1 LINE L1 5940 6155 -11 295 235 55 90 chr4 170061341 170061541 -32266806 + L1MEd LINE L1 1046 1238 -4881 343 301 55 20 chr4 170061622 170061887 -32266460 + L1MEd LINE L1 1321 1635 -4534 245 263 157 30 chr4 170062078 170062276 -32266071 + L1MEd LINE L1 2131 2371 -3758 264 30 0 0 chr4 170062276 170062309 -32266038 + (CA)n Simple_repeat Simple_repeat 2 34 0 245 263 157 30 chr4 170062309 170062372 -32265975 + L1MEd LINE L1 2371 2425 -3704 229 286 112 38 chr4 170062823 170063323 -32265024 + L1MEd LINE L1 2964 3500 -2629 228 329 0 0 chr4 170063440 170063510 -32264837 - LTR16C LTR ERVL -3 488 419 634 282 61 103 chr4 170063511 170063986 -32264361 + LTR16B LTR ERVL 3 457 -7 911 340 54 26 chr4 170064221 170064248 -32264099 + HERV16 LTR ERVL 218 243 -4753 2258 100 3 3 chr4 170064248 170064559 -32263788 + AluSp SINE Alu 3 313 0 911 340 54 26 chr4 170064559 170065105 -32263242 + HERV16 LTR ERVL 243 807 -4189 1057 313 40 31 chr4 170065203 170065651 -32262696 + HERV16 LTR ERVL 968 1419 -3577 1790 345 59 38 chr4 170065655 170066938 -32261409 + HERV16 LTR ERVL 2069 3096 -1900 242 386 148 6 chr4 170066949 170067301 -32261046 - L2 LINE L2 -424 2890 2489 373 289 208 25 chr4 170067315 170067474 -32260873 - MER5A DNA MER1_type 0 189 2 578 360 44 22 chr4 170067475 170067836 -32260511 - L2 LINE L2 -836 2478 2110 384 22 0 0 chr4 170067955 170068000 -32260347 + (CA)n Simple_repeat Simple_repeat 2 46 0 288 322 17 8 chr4 170068769 170068887 -32259460 + L1MEd LINE L1 4020 4138 -1991 31 0 0 0 chr4 170069276 170069307 -32259040 + AT_rich Low_complexity Low_complexity 1 31 0 885 199 121 35 chr4 170069502 170069612 -32258735 + AluJb SINE Alu 11 110 -202 252 0 0 0 chr4 170069612 170069640 -32258707 + (TA)n Simple_repeat Simple_repeat 2 29 0 885 199 121 35 chr4 170069640 170069785 -32258562 + AluJb SINE Alu 110 288 -24 848 176 13 0 chr4 170069787 170069940 -32258407 + MLT1A1 LTR MaLR 211 365 0 346 215 0 0 chr4 170069942 170070021 -32258326 + L1MC2 LINE L1 3821 3899 -2247 239 169 51 51 chr4 170070024 170070036 -32258311 + MER21A LTR ERV1 11 22 -909 387 105 0 0 chr4 170070036 170070093 -32258254 + (TA)n Simple_repeat Simple_repeat 2 58 0 239 169 51 51 chr4 170070093 170070139 -32258208 + MER21A LTR ERV1 21 69 -862 437 110 121 77 chr4 170070254 170070345 -32258002 + MER21A LTR ERV1 70 164 -767 3282 179 27 56 chr4 170070377 170071201 -32257146 + MER21A LTR ERV1 180 915 -16 4154 231 72 14 chr4 170071205 170072282 -32256065 + L1MC2 LINE L1 4076 5088 -1256 1414 123 40 8 chr4 170072282 170072535 -32255812 - L1MA4A LINE L1 -6 6297 6037 4154 231 72 14 chr4 170072535 170073582 -32254765 + L1MC2 LINE L1 5088 6318 -26 261 321 79 30 chr4 170075099 170075264 -32253083 - L2 LINE L2 -413 2901 2729 31 0 0 0 chr4 170075274 170075305 -32253042 + AT_rich Low_complexity Low_complexity 1 31 0 329 268 123 29 chr4 170075450 170075588 -32252759 + ERVL LTR ERVL 3538 3688 -2076 325 330 48 24 chr4 170075653 170075862 -32252485 + ERVL LTR ERVL 3726 3939 -1715 318 50 0 0 chr4 170076061 170076101 -32252246 + (TA)n Simple_repeat Simple_repeat 1 40 0 258 280 21 11 chr4 170076105 170076198 -32252149 + L1MC4 LINE L1 6609 6702 -1340 378 322 61 42 chr4 170076215 170076429 -32251918 + ERVL LTR ERVL 4044 4261 -1393 310 367 29 7 chr4 170076876 170077015 -32251332 + LTR16C LTR ERVL 97 238 -253 1923 132 0 7 chr4 170077061 170077375 -32250972 - AluSc SINE Alu 0 312 1 1298 163 5 0 chr4 170077823 170078044 -32250303 + L1PA16 LINE L1 5940 6161 -5 403 325 97 40 chr4 170078582 170078794 -32249553 - ERVL LTR ERVL -3200 2564 2366 1756 169 22 30 chr4 170078794 170079156 -32249191 + MER46B DNA MER2_type 1 234 -2 403 325 97 40 chr4 170079156 170079364 -32248983 - ERVL LTR ERVL -3398 2366 2120 362 141 92 28 chr4 170080221 170080363 -32247984 - L1MA9 LINE L1 -4 6308 6034 2249 104 0 0 chr4 170080486 170080784 -32247563 - AluSc SINE Alu -11 298 1 440 314 52 12 chr4 170080877 170081125 -32247222 - MIR SINE MIR -1 261 4 35 0 0 0 chr4 170082421 170082456 -32245891 + AT_rich Low_complexity Low_complexity 1 35 0 2078 87 65 0 chr4 170082649 170082925 -32245422 + AluY SINE Alu 1 294 -17 801 183 8 0 chr4 170082938 170083069 -32245278 + FLAM_C SINE Alu 1 125 -18 2064 144 66 19 chr4 170083982 170084392 -32243955 + MSTB1 LTR MaLR 4 432 0 3596 222 69 17 chr4 170085285 170086284 -32242063 - L1MC3 LINE L1 -7 7778 6728 284 317 12 0 chr4 170086422 170086504 -32241843 + MIR SINE MIR 66 148 -60 22 35 0 0 chr4 170087636 170087665 -32240682 + AT_rich Low_complexity Low_complexity 1 29 0 225 283 47 19 chr4 170087699 170087805 -32240542 + L1ME LINE L1 5522 5630 -491 278 247 35 12 chr4 170087897 170087982 -32240365 + MIR SINE MIR 103 189 -73 21 36 0 0 chr4 170088030 170088058 -32240289 + AT_rich Low_complexity Low_complexity 1 28 0 284 163 20 0 chr4 170089361 170089410 -32238937 - MER53 DNA DNA -139 50 1 701 176 32 80 chr4 170090127 170090314 -32238033 + MLT1A2 LTR MaLR 1 178 -196 1348 179 69 24 chr4 170090351 170090642 -32237705 + THE1C LTR MaLR 72 375 0 669 188 21 28 chr4 170090647 170090791 -32237556 + MLT1A2 LTR MaLR 243 385 -5 340 241 41 75 chr4 170090932 170091186 -32237161 - L1MEc LINE L1 -2710 3505 3214 1415 194 31 3 chr4 170091199 170091492 -32236855 - AluJo SINE Alu -11 301 1 1345 248 113 57 chr4 170091492 170092698 -32235649 - L1MEc LINE L1 -2959 3256 1989 326 234 84 28 chr4 170092704 170092811 -32235536 - L1 LINE L1 -3289 2926 2814 666 301 102 40 chr4 170092915 170093190 -32235157 - L1ME LINE L1 -2890 3190 2933 1806 163 0 3 chr4 170093190 170093512 -32234835 - AluSx SINE Alu 0 321 1 666 301 102 40 chr4 170093512 170093706 -32234641 - L1ME LINE L1 -3147 2933 2752 2421 66 0 3 chr4 170093706 170094009 -32234338 + AluY SINE Alu 1 302 -9 666 301 102 40 chr4 170094009 170094832 -32233515 - L1ME LINE L1 -3328 2752 1856 499 240 28 74 chr4 170094906 170095123 -32233224 - L1ME LINE L1 -4552 1528 1322 406 275 91 72 chr4 170095310 170095915 -32232432 - L1ME LINE L1 -4901 1181 688 910 263 50 31 chr4 170096012 170096398 -32231949 - MLT2C1 LTR ERVL -8 655 1 343 281 96 21 chr4 170097362 170097582 -32230765 - L1ME3A LINE L1 -224 5946 5710 26 74 0 0 chr4 170097819 170097873 -32230474 + AT_rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr4 170098397 170098420 -32229927 + AT_rich Low_complexity Low_complexity 1 23 0 570 198 9 9 chr4 170099050 170099161 -32229186 + FLAM_A SINE Alu 2 112 -30 3286 249 104 28 chr4 170099724 170102914 -32225433 - L1MCb LINE L1 -3135 3429 2 23 0 0 0 chr4 170103970 170103993 -32224354 + AT_rich Low_complexity Low_complexity 1 23 0 440 325 51 5 chr4 170104326 170104523 -32223824 - MIR SINE MIR -54 208 3 1243 278 72 0 chr4 170104726 170105061 -32223286 + MLT1A1 LTR MaLR 1 359 -6 2922 119 49 74 chr4 170105151 170105704 -32222643 + MER4B LTR ERV1 1 539 -71 3145 164 27 10 chr4 170105704 170105931 -32222416 - MER1A DNA MER1_type -2173 529 307 4584 112 30 0 chr4 170105931 170106602 -32221745 - LTR8 LTR ERV1 0 691 1 3145 164 27 10 chr4 170106602 170106894 -32221453 - MER1A DNA MER1_type -2395 307 1 556 118 0 32 chr4 170106894 170106975 -32221372 + MER4E LTR ERV1 702 779 0 42 20 0 0 chr4 170107401 170107450 -32220897 + AT_rich Low_complexity Low_complexity 1 49 0 1943 141 24 43 chr4 170108154 170108523 -32219824 - THE1B LTR MaLR -2 362 1 6770 97 8 3 chr4 170108523 170109463 -32218884 - THE1B-int LTR MaLR 0 1580 636 271 79 0 0 chr4 170109465 170109503 -32218844 - MSTA LTR MaLR -390 38 1 252 228 0 0 chr4 170109672 170109729 -32218618 + CT-rich Low_complexity Low_complexity 2 58 0 23 54 0 0 chr4 170109950 170109987 -32218360 + AT_rich Low_complexity Low_complexity 1 37 0 3726 151 27 31 chr4 170110481 170111211 -32217136 - LTR8A LTR ERV1 0 727 1 1941 152 60 41 chr4 170111384 170112027 -32216320 + LTR34 LTR ERV1 1 699 0 270 160 0 0 chr4 170114074 170114124 -32214223 + (TG)n Simple_repeat Simple_repeat 1 50 0 1455 104 5 5 chr4 170114534 170114755 -32213592 - pTR5 LTR ERV1 -2046 392 172 331 214 31 20 chr4 170114758 170114856 -32213491 - LTR30 LTR ERV1 -80 642 544 3766 156 39 55 chr4 170114860 170115837 -32212510 - pTR5 LTR ERV1 -417 2021 741 628 332 53 52 chr4 170116918 170117575 -32210772 - L1MEd LINE L1 -5458 661 4 425 297 7 29 chr4 170117768 170117906 -32210441 - L2 LINE L2 -20 3293 3159 2162 216 94 64 chr4 170118477 170119278 -32209069 - LTR1B LTR ERV1 0 826 2 34 72 0 0 chr4 170119542 170119611 -32208736 + AT_rich Low_complexity Low_complexity 1 69 0 243 152 0 0 chr4 170120721 170120767 -32207580 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 212 351 63 53 chr4 170121769 170122088 -32206259 - L2 LINE L2 -1607 1707 1386 864 209 52 68 chr4 170122786 170123111 -32205236 + MER33 DNA MER1_type 5 324 0 21 36 0 0 chr4 170123151 170123179 -32205168 + AT_rich Low_complexity Low_complexity 1 28 0 270 239 132 69 chr4 170124501 170124660 -32203687 + LTR67 LTR ERVL 2 170 -387 2397 66 0 25 chr4 170124818 170125135 -32203212 - AluY SINE Alu -2 309 1 22 0 0 0 chr4 170125421 170125443 -32202904 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr4 170125569 170125601 -32202746 + AT_rich Low_complexity Low_complexity 1 32 0 848 234 43 46 chr4 170125807 170126132 -32202215 - MER33 DNA MER1_type 0 324 1 820 108 17 0 chr4 170129924 170130044 -32198303 - 7SLRNA srpRNA srpRNA -5 315 194 1945 113 18 7 chr4 170130098 170130382 -32197965 - AluSx SINE Alu -25 287 1 29 0 0 0 chr4 170130591 170130620 -32197727 + AT_rich Low_complexity Low_complexity 1 29 0 25 75 0 0 chr4 170132369 170132422 -32195925 + AT_rich Low_complexity Low_complexity 1 53 0 235 277 0 89 chr4 170132422 170132534 -32195813 - MIR SINE MIR -1 261 160 518 281 35 55 chr4 170132888 170133087 -32195260 - MIR SINE MIR -24 238 44 1929 134 28 0 chr4 170135698 170135981 -32192366 + AluSc SINE Alu 1 291 -18 231 272 13 70 chr4 170136058 170136216 -32192131 + L1MC4 LINE L1 5668 5816 -1992 21 0 0 0 chr4 170136485 170136506 -32191841 + AT_rich Low_complexity Low_complexity 1 21 0 5001 43 0 2 chr4 170138119 170138739 -32189608 - L1P LINE L1 -1108 5038 4420 * 8913 33 12 0 chr4 170138737 170139827 -32188520 + L1P LINE L1 3307 4409 -1737 25 31 0 0 chr4 170141233 170141265 -32187082 + AT_rich Low_complexity Low_complexity 1 32 0 225 219 0 0 chr4 170141572 170141636 -32186711 + L1MC4 LINE L1 6640 6703 -1339 344 274 0 11 chr4 170141664 170141759 -32186588 - L1MC4 LINE L1 -1339 6703 6610 1744 172 0 0 chr4 170141771 170142061 -32186286 - AluSx SINE Alu -22 290 1 42275 34 24 2 chr4 170144024 170149609 -32178738 + L1P1 LINE L1 3 5709 -446 300 281 110 54 chr4 170149753 170150126 -32178221 + Charlie2a DNA MER1_type 1079 1472 -1390 195 323 138 8 chr4 170150160 170150290 -32178057 - L2 LINE L2 -204 3068 2922 2066 175 35 43 chr4 170150504 170150926 -32177421 - MSTB1 LTR MaLR -13 419 1 688 294 116 38 chr4 170153717 170154138 -32174209 - L2 LINE L2 -644 2670 2217 688 344 128 30 chr4 170154159 170154763 -32173584 - L2 LINE L2 -1658 1656 994 230 324 36 65 chr4 170154943 170155082 -32173265 - L2 LINE L2 -2889 425 291 267 31 0 0 chr4 170155604 170155636 -32172711 + (TG)n Simple_repeat Simple_repeat 1 32 0 345 284 24 12 chr4 170155754 170155923 -32172424 + (TA)n Simple_repeat Simple_repeat 1 171 0 24 32 0 0 chr4 170156373 170156404 -32171943 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 170157333 170157357 -32170990 + AT_rich Low_complexity Low_complexity 1 24 0 482 366 57 11 chr4 170158372 170158918 -32169429 - Tigger8 DNA MER2_type -13 653 83 270 0 0 0 chr4 170159240 170159270 -32169077 + (TA)n Simple_repeat Simple_repeat 1 30 0 29 28 0 0 chr4 170159628 170159664 -32168683 + AT_rich Low_complexity Low_complexity 1 36 0 905 294 101 41 chr4 170161711 170162831 -32165516 - L1MEc LINE L1 -4990 1228 81 229 347 123 42 chr4 170163347 170163632 -32164715 - L2 LINE L2 -1 3312 3005 198 207 207 24 chr4 170164363 170164445 -32163902 + L2 LINE L2 3168 3264 -8 1880 100 4 0 chr4 170164816 170165065 -32163282 - AluSp SINE Alu -15 298 49 444 77 0 0 chr4 170166950 170167015 -32161332 + (CA)n Simple_repeat Simple_repeat 1 65 0 1097 263 89 69 chr4 170167204 170167397 -32160950 + MLT1E1 LTR MaLR 60 248 -406 3946 61 2 45 chr4 170167397 170167971 -32160376 + L1PA8 LINE L1 5624 6172 0 1097 263 89 69 chr4 170167971 170168358 -32159989 + MLT1E1 LTR MaLR 248 652 -2 5640 32 0 0 chr4 170168912 170169577 -32158770 - L1PA3 LINE L1 -2 6153 5489 2143 20 0 0 chr4 170169577 170169933 -32158414 + L1PA3 LINE L1 5138 5493 -662 221 377 58 14 chr4 170170458 170170596 -32157751 - MIR SINE MIR -56 206 63 22 0 0 0 chr4 170171284 170171306 -32157041 + AT_rich Low_complexity Low_complexity 1 22 0 32 26 0 0 chr4 170171399 170171438 -32156909 + AT_rich Low_complexity Low_complexity 1 39 0 455 296 171 7 chr4 170172266 170172418 -32155929 - MER5A DNA MER1_type 0 189 13 1828 212 21 66 chr4 170172877 170173406 -32154941 - MLT1D LTR MaLR 0 505 1 310 292 22 0 chr4 170173551 170173640 -32154707 - L2 LINE L2 0 3272 3182 856 324 78 8 chr4 170173646 170174019 -32154328 - L2 LINE L2 -5 3308 2910 1326 222 53 70 chr4 170174479 170174952 -32153395 + MLT1C LTR MaLR 1 465 -2 385 317 24 12 chr4 170175357 170175521 -32152826 - L1ME2 LINE L1 -10 6154 5989 1038 290 65 20 chr4 170175540 170175998 -32152349 - L1ME2 LINE L1 -261 5903 5425 546 0 40 0 chr4 170177151 170177225 -32151122 + (TCTA)n Simple_repeat Simple_repeat 1 77 0 538 211 37 0 chr4 170177356 170177465 -32150882 + Tigger5 DNA MER2_type 2211 2323 0 470 62 0 0 chr4 170177691 170177755 -32150592 - Alu SINE Alu -7 303 240 26 50 0 0 chr4 170178963 170179003 -32149344 + AT_rich Low_complexity Low_complexity 1 40 0 28 79 0 0 chr4 170179277 170179340 -32149007 + AT_rich Low_complexity Low_complexity 1 63 0 209 339 74 64 chr4 170179868 170180166 -32148181 - L2 LINE L2 -1 3271 2971 183 200 44 0 chr4 170180673 170180718 -32147629 + MIR3 SINE MIR 119 165 -43 2693 197 18 61 chr4 170180818 170181228 -32147119 - L1MB5 LINE L1 -266 5908 5482 2202 110 3 10 chr4 170181228 170181538 -32146809 - AluSq SINE Alu -3 310 3 2693 197 18 61 chr4 170181538 170181753 -32146594 - L1MB5 LINE L1 -692 5482 5259 1832 159 7 0 chr4 170181753 170182043 -32146304 - AluSx SINE Alu -20 292 1 2693 197 18 61 chr4 170182043 170182344 -32146003 - L1MB5 LINE L1 -915 5259 5008 2096 94 4 4 chr4 170182575 170182851 -32145496 + AluSx SINE Alu 13 288 -24 423 0 0 0 chr4 170182855 170182902 -32145445 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 1812 180 7 0 chr4 170182905 170183205 -32145142 + AluJb SINE Alu 1 302 -10 425 256 100 43 chr4 170183747 170183977 -32144370 + MIR SINE MIR 6 248 -14 2189 116 0 0 chr4 170184749 170185043 -32143304 - AluSx SINE Alu -18 294 1 213 400 11 0 chr4 170186279 170186369 -32141978 + L2 LINE L2 3182 3272 0 1480 195 38 11 chr4 170186480 170186767 -32141580 + AluJo SINE Alu 2 296 -16 31 76 0 0 chr4 170186795 170186861 -32141486 + AT_rich Low_complexity Low_complexity 1 66 0 1538 210 44 16 chr4 170187385 170187751 -32140596 - MLT1B LTR MaLR -2 388 13 340 336 14 62 chr4 170187817 170188025 -32140322 + L2 LINE L2 1959 2156 -1158 280 369 82 31 chr4 170188106 170188301 -32140046 + L2 LINE L2 2365 2569 -745 2923 278 37 11 chr4 170188447 170189679 -32138668 + L1MC2 LINE L1 2528 3791 -2355 389 210 167 7 chr4 170189676 170189814 -32138533 - L1M4 LINE L1 -2170 3976 3817 * 1156 108 32 5 chr4 170189815 170190000 -32138347 + L1PA13 LINE L1 5974 6163 0 1037 279 10 3 chr4 170190007 170190308 -32138039 - L1ME LINE L1 -589 5577 5275 1194 200 70 17 chr4 170190334 170191226 -32137121 + L1MC2 LINE L1 5347 6344 0 877 297 97 50 chr4 170191736 170191923 -32136424 + MLT1H LTR MaLR 39 216 -333 15896 70 18 0 chr4 170191923 170194841 -32133506 + L1PA6 LINE L1 3219 6152 -2 877 297 97 50 chr4 170194841 170195138 -32133209 + MLT1H LTR MaLR 216 546 -3 26 0 0 0 chr4 170195352 170195378 -32132969 + AT_rich Low_complexity Low_complexity 1 26 0 1442 234 23 71 chr4 170195470 170195988 -32132359 - L1MA9 LINE L1 -38 6274 5782 183 205 0 0 chr4 170195993 170196032 -32132315 + (CA)n Simple_repeat Simple_repeat 2 40 0 314 236 11 0 chr4 170196080 170196169 -32132178 - L1MA9 LINE L1 -502 5789 5700 * 1486 179 25 8 chr4 170196164 170196298 -32132049 - L1MA9 LINE L1 -1341 4805 4675 312 27 0 0 chr4 170196298 170196335 -32132012 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 1486 179 25 8 chr4 170196335 170196557 -32131790 - L1MA9 LINE L1 -1471 4675 4443 601 187 45 0 chr4 170196559 170196693 -32131654 + L1M4c LINE L1 2412 2551 -4298 1103 113 0 0 chr4 170196693 170196844 -32131503 + AluSg/x SINE Alu 156 306 -6 977 257 14 31 chr4 170196872 170197330 -32131017 + L1M4c LINE L1 2496 2949 -3901 2168 117 0 0 chr4 170197373 170197664 -32130683 + AluSg SINE Alu 1 291 -19 23 54 0 0 chr4 170199362 170199399 -32128948 + AT_rich Low_complexity Low_complexity 1 37 0 477 34 0 0 chr4 170199787 170199846 -32128501 + (TG)n Simple_repeat Simple_repeat 2 60 0 37 23 0 0 chr4 170200063 170200107 -32128240 + AT_rich Low_complexity Low_complexity 1 44 0 1484 216 157 31 chr4 170200257 170200715 -32127632 - MLT2B1 LTR ERVL 0 520 5 279 381 8 16 chr4 170200717 170200843 -32127504 - MER5A DNA MER1_type -2 187 63 * 280 250 98 45 chr4 170200752 170200864 -32127483 + MER5A DNA MER1_type 47 164 -25 4179 168 17 7 chr4 170201198 170201943 -32126404 + Tigger2 DNA MER2_type 2 754 -1964 910 174 161 27 chr4 170202000 170202224 -32126123 + Tigger2 DNA MER2_type 2465 2718 0 22 35 0 0 chr4 170203863 170203892 -32124455 + AT_rich Low_complexity Low_complexity 1 29 0 29 90 0 0 chr4 170204112 170204190 -32124157 + AT_rich Low_complexity Low_complexity 1 78 0 23 54 0 0 chr4 170204564 170204601 -32123746 + AT_rich Low_complexity Low_complexity 1 37 0 10983 97 3 5 chr4 170204997 170206583 -32121764 - L1PA7 LINE L1 -1746 4400 2818 6709 75 7 0 chr4 170206586 170208311 -32120036 + L1PA7 LINE L1 4397 6147 -7 28 0 0 0 chr4 170208311 170208339 -32120008 + AT_rich Low_complexity Low_complexity 1 28 0 1805 154 11 0 chr4 170208377 170208650 -32119697 - AluSx SINE Alu -36 276 1 26 30 0 0 chr4 170208936 170208969 -32119378 + AT_rich Low_complexity Low_complexity 1 33 0 361 323 112 50 chr4 170208973 170209530 -32118817 - L2 LINE L2 0 3313 2730 225 65 0 0 chr4 170210753 170210784 -32117563 + (CA)n Simple_repeat Simple_repeat 2 32 0 501 322 45 15 chr4 170210922 170211121 -32117226 + MIR SINE MIR 57 261 -1 23 33 0 0 chr4 170211280 170211310 -32117037 + AT_rich Low_complexity Low_complexity 1 30 0 990 153 38 14 chr4 170211414 170211623 -32116724 - L1M4 LINE L1 -1316 4830 4617 194 116 23 0 chr4 170211849 170211892 -32116455 + (TTAA)n Simple_repeat Simple_repeat 2 45 0 186 224 0 0 chr4 170212445 170212494 -32115853 + (TA)n Simple_repeat Simple_repeat 1 49 0 26 30 0 0 chr4 170212850 170212883 -32115464 + AT_rich Low_complexity Low_complexity 1 33 0 2158 118 14 0 chr4 170213084 170213381 -32114966 + AluSx SINE Alu 1 301 -11 496 348 20 5 chr4 170213594 170213798 -32114549 - L1M3d LINE L1 -5009 882 676 651 306 81 63 chr4 170213945 170214596 -32113751 - L1M3d LINE L1 -5225 666 4 261 197 0 42 chr4 170214727 170214798 -32113549 + GA-rich Low_complexity Low_complexity 6 73 0 416 351 75 35 chr4 170216302 170216647 -32111700 + L1ME3A LINE L1 964 1322 -5220 247 291 149 0 chr4 170216856 170216990 -32111357 + L1ME3A LINE L1 1623 1776 -4764 372 326 64 67 chr4 170216991 170217238 -32111109 + L1ME3A LINE L1 2324 2570 -4151 237 33 0 0 chr4 170217238 170217268 -32111079 + (CA)n Simple_repeat Simple_repeat 2 31 0 372 326 64 67 chr4 170217268 170217285 -32111062 + L1ME3A LINE L1 2570 2586 -4135 2520 147 59 2 chr4 170217285 170217708 -32110639 - MER83 LTR ERV1 -1 447 1 372 326 64 67 chr4 170217708 170217847 -32110500 + L1ME3A LINE L1 2586 2727 -3994 293 228 0 0 chr4 170217933 170217986 -32110361 + MER76 LTR ERV 5 57 -631 886 214 0 36 chr4 170217986 170218178 -32110169 + MER6B DNA MER2_type 3 187 -23 574 210 50 0 chr4 170218178 170218297 -32110050 + MER76 LTR ERV 232 356 -332 * 6948 177 9 2 chr4 170218294 170219511 -32108836 + Tigger1 DNA MER2_type 7 1231 -1187 732 127 30 0 chr4 170219524 170219658 -32108689 + Tigger1 DNA MER2_type 2187 2324 -94 * 6933 146 25 4 chr4 170219655 170220803 -32107544 + Tigger1 DNA MER2_type 1247 2418 0 1138 213 61 73 chr4 170220803 170221142 -32107205 + MER76 LTR ERV 354 688 0 302 272 169 16 chr4 170221156 170221410 -32106937 + L1ME3A LINE L1 2761 3053 -3487 * 1323 278 88 9 chr4 170221392 170221974 -32106373 + L1ME3A LINE L1 5932 6559 -5 473 289 86 0 chr4 170222577 170222729 -32105618 + MLT2E LTR ERVL 21 185 -443 1019 176 0 20 chr4 170222816 170223020 -32105327 - AluSg/x SINE Alu 0 312 113 2105 123 0 25 chr4 170223163 170223480 -32104867 - AluSx SINE Alu 0 312 4 189 134 15 90 chr4 170224692 170224759 -32103588 - L3 LINE CR1 -869 708 647 22 0 0 0 chr4 170226250 170226272 -32102075 + AT_rich Low_complexity Low_complexity 1 22 0 201 74 0 0 chr4 170226461 170226488 -32101859 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8248 53 1 0 chr4 170226667 170227632 -32100715 + LTR5 LTR ERVK 1 966 -3 2321 33 0 0 chr4 170227635 170227907 -32100440 + HERVK LTR ERVK 1 272 -6971 * 7837 21 1 3 chr4 170227889 170228802 -32099545 + HERVK LTR ERVK 423 1333 -5910 657 49 0 0 chr4 170228802 170228884 -32099463 - LTR5 LTR ERVK -887 82 1 1821 10 0 0 chr4 170228884 170229086 -32099261 + HERVK LTR ERVK 1132 1333 -5910 630 61 0 0 chr4 170229086 170229168 -32099179 - LTR5 LTR ERVK -887 82 1 498 184 10 19 chr4 170229663 170229766 -32098581 + Ricksha DNA DNA 366 467 -2779 455 166 10 31 chr4 170229767 170229876 -32098471 + MLT2B3 LTR ERVL 390 535 -19 254 61 163 0 chr4 170229903 170229952 -32098395 + MLT2B1 LTR ERVL 464 520 0 4877 74 41 25 chr4 170230033 170230710 -32097637 + LTR12 LTR ERV1 1 688 0 20094 106 11 13 chr4 170230734 170233654 -32094693 + Harlequin LTR ERV1 58 2972 -5427 1829 123 23 32 chr4 170233653 170234203 -32094144 + Harlequin LTR ERV1 713 4974 -3425 * 1665 114 33 18 chr4 170234190 170234582 -32093765 + HERV17 LTR ERV1 1275 1720 -5176 * 4602 112 2 0 chr4 170234577 170235219 -32093128 + HERV17 LTR ERV1 7757 8399 0 5013 82 7 35 chr4 170235219 170235927 -32092420 + LTR12 LTR ERV1 1 688 0 267 175 67 25 chr4 170236231 170236351 -32091996 + (TATAA)n Simple_repeat Simple_repeat 5 129 0 21 36 0 0 chr4 170238006 170238034 -32090313 + AT_rich Low_complexity Low_complexity 1 28 0 322 299 23 0 chr4 170238575 170238662 -32089685 - MER63 DNA MER1_type 0 1061 973 307 337 120 17 chr4 170238693 170238868 -32089479 + MER68 LTR ERV1 404 562 0 504 77 0 0 chr4 170238891 170238906 -32089441 + (CCTG)n Simple_repeat Simple_repeat 1 93 0 504 77 0 0 chr4 170238906 170238984 -32089363 + (CCTG)n Simple_repeat Simple_repeat 2 79 0 289 195 26 18 chr4 170239144 170239257 -32089090 + CT-rich Low_complexity Low_complexity 4 117 0 697 164 0 0 chr4 170239267 170239383 -32088964 - AluJo/FRAM SINE Alu -35 277 162 553 130 11 0 chr4 170239376 170239468 -32088879 - AluS SINE Alu -219 93 1 * 1237 292 26 27 chr4 170239468 170240088 -32088259 - ERVL-C1 LTR ERVL -4776 988 282 389 205 31 0 chr4 170240125 170240252 -32088095 + (TA)n Simple_repeat Simple_repeat 2 132 0 23 54 0 0 chr4 170240252 170240289 -32088058 + AT_rich Low_complexity Low_complexity 1 37 0 326 301 0 0 chr4 170240337 170240420 -32087927 - ERVL-C1 LTR ERVL -5604 160 78 2112 135 0 0 chr4 170240420 170240723 -32087624 - AluSx SINE Alu -9 303 1 1152 265 18 37 chr4 170240819 170241200 -32087147 - MLT2C1 LTR ERVL -7 390 17 804 107 0 57 chr4 170241408 170241548 -32086799 + FLAM_C SINE Alu 1 132 -1 254 232 0 12 chr4 170242227 170242309 -32086038 + (TA)n Simple_repeat Simple_repeat 1 81 0 302 233 96 96 chr4 170242779 170243019 -32085328 + L1MC4a LINE L1 6284 6523 -1285 212 59 29 0 chr4 170243071 170243105 -32085242 + (TA)n Simple_repeat Simple_repeat 2 36 0 1191 312 58 37 chr4 170243105 170243781 -32084566 + L1MC4 LINE L1 6908 7597 -445 244 256 51 0 chr4 170243988 170244066 -32084281 + L1MC4 LINE L1 7809 7890 -152 326 326 50 50 chr4 170244164 170244385 -32083962 - MLT1J LTR MaLR -265 246 26 2170 123 20 0 chr4 170244432 170244552 -32083795 + AluSg SINE Alu 3 119 -191 270 73 0 0 chr4 170244552 170244593 -32083754 + (CA)n Simple_repeat Simple_repeat 2 42 0 2170 123 20 0 chr4 170244593 170244772 -32083575 + AluSg SINE Alu 119 308 -2 208 216 0 0 chr4 170245177 170245214 -32083133 + polypurine Low_complexity Low_complexity 1 37 0 1691 174 0 7 chr4 170245667 170245942 -32082405 + AluJo SINE Alu 11 283 -29 333 0 0 0 chr4 170246173 170246210 -32082137 + (TG)n Simple_repeat Simple_repeat 2 38 0 404 305 115 37 chr4 170246569 170248055 -32080292 - L1ME3A LINE L1 -234 5936 4254 336 297 46 4 chr4 170248158 170248397 -32079950 - L1ME3A LINE L1 -2196 3950 3702 3506 266 122 31 chr4 170248424 170250668 -32077679 - L1MEc LINE L1 -1613 4602 2197 992 320 44 6 chr4 170252510 170253013 -32075334 - L1ME3A LINE L1 0 6170 5649 316 312 136 30 chr4 170253018 170253319 -32075028 - L1ME3A LINE L1 -577 5587 5255 7625 247 54 22 chr4 170253455 170256500 -32071847 + L1P4 LINE L1 323 3468 -3329 249 264 17 86 chr4 170256613 170256787 -32071560 + L1P4 LINE L1 3350 3511 -3286 953 233 40 18 chr4 170257182 170257410 -32070937 - MIR SINE MIR -22 240 8 2264 97 0 10 chr4 170257470 170257781 -32070566 - AluSc SINE Alu -1 308 1 21 0 0 0 chr4 170257860 170257881 -32070466 + AT_rich Low_complexity Low_complexity 1 21 0 10222 209 23 12 chr4 170257969 170260692 -32067655 + L1P4 LINE L1 3510 6266 -550 828 135 0 0 chr4 170260692 170260859 -32067488 + L1PA15 LINE L1 6025 6200 0 347 204 0 153 chr4 170261373 170261432 -32066915 - L1MC3 LINE L1 -455 7330 7308 2207 76 0 0 chr4 170261432 170261722 -32066625 - AluY SINE Alu -6 305 16 347 204 0 153 chr4 170261722 170261819 -32066528 - L1MC3 LINE L1 -477 7308 7198 255 263 13 0 chr4 170261841 170261917 -32066430 - MLT1F1 LTR MaLR -456 111 35 430 167 39 0 chr4 170261917 170262019 -32066328 - L1MC3 LINE L1 -688 7097 6992 267 31 0 0 chr4 170263435 170263467 -32064880 + (TG)n Simple_repeat Simple_repeat 2 33 0 25 51 0 0 chr4 170263693 170263732 -32064615 + AT_rich Low_complexity Low_complexity 1 39 0 2656 205 31 2 chr4 170264075 170264622 -32063725 + L1MA9 LINE L1 5377 5939 -373 1327 180 8 199 chr4 170264639 170265156 -32063191 + MER47B DNA MER2_type 1 418 0 1066 202 24 74 chr4 170265159 170265496 -32062851 + L1MA9 LINE L1 5953 6272 -40 222 163 0 41 chr4 170266540 170266589 -32061758 + GA-rich Low_complexity Low_complexity 2 48 0 1611 117 117 0 chr4 170267518 170267766 -32060581 + AluSx SINE Alu 36 312 0 424 347 112 16 chr4 170267992 170268375 -32059972 + L2 LINE L2 50 469 -2845 402 297 80 14 chr4 170268390 170268528 -32059819 + MER5B DNA MER1_type 32 178 0 455 346 121 38 chr4 170268528 170269008 -32059339 + L2 LINE L2 470 989 -2325 * 618 342 136 3 chr4 170269002 170269089 -32059258 - L2 LINE L2 -1128 2186 2112 216 0 0 0 chr4 170269089 170269113 -32059234 + (TAA)n Simple_repeat Simple_repeat 2 25 0 618 342 136 3 chr4 170269113 170269385 -32058962 - L2 LINE L2 -1202 2112 1779 1135 293 135 6 chr4 170269579 170270054 -32058293 + L2 LINE L2 2424 2959 -355 1457 219 6 13 chr4 170270060 170270375 -32057972 - MLT1A1 LTR MaLR -43 322 10 1939 86 48 0 chr4 170270446 170270568 -32057779 + AluSc SINE Alu 1 116 -189 369 0 0 0 chr4 170270568 170270609 -32057738 + (CA)n Simple_repeat Simple_repeat 2 42 0 1939 86 48 0 chr4 170270609 170270778 -32057569 + AluSc SINE Alu 116 305 0 494 275 8 0 chr4 170271027 170271147 -32057200 + MER119 DNA MER1_type 188 308 -275 259 279 8 62 chr4 170271158 170271287 -32057060 + MER119 DNA MER1_type 431 552 -31 48 0 0 0 chr4 170272075 170272123 -32056224 + AT_rich Low_complexity Low_complexity 1 48 0 16918 43 4 1 chr4 170272123 170274987 -32053360 - L1PA5 LINE L1 -8 6146 3270 243 414 0 0 chr4 170275366 170275465 -32052882 + L2 LINE L2 3137 3235 -37 246 330 52 17 chr4 170275629 170275744 -32052603 + L2 LINE L2 3154 3272 0 22 35 0 0 chr4 170275973 170276002 -32052345 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr4 170276269 170276303 -32052044 + AT_rich Low_complexity Low_complexity 1 34 0 187 31 62 0 chr4 170276445 170276477 -32051870 + (TTTAA)n Simple_repeat Simple_repeat 3 36 0 22 70 0 0 chr4 170276555 170276598 -32051749 + AT_rich Low_complexity Low_complexity 1 43 0 1075 326 86 64 chr4 170277182 170278295 -32050052 - HERV16 LTR ERVL -3817 1179 42 247 291 62 79 chr4 170278513 170278740 -32049607 - LTR16A1 LTR ERVL -213 244 22 213 360 44 0 chr4 170279033 170279147 -32049200 - L2 LINE L2 -8 3264 3146 210 91 0 0 chr4 170279489 170279522 -32048825 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 2179 95 3 7 chr4 170280043 170280339 -32048008 - AluY SINE Alu -16 295 1 901 233 33 12 chr4 170280647 170280922 -32047425 + L1MB5 LINE L1 5881 6160 -14 24 53 0 0 chr4 170280922 170280960 -32047387 + AT_rich Low_complexity Low_complexity 1 38 0 1299 235 42 25 chr4 170281961 170282009 -32046338 - MLT1A1 LTR MaLR -1 364 318 2446 61 3 12 chr4 170282009 170282336 -32046011 + L1PA7 LINE L1 5830 6153 -1 1299 235 42 25 chr4 170282336 170282645 -32045702 - MLT1A1 LTR MaLR -47 318 1 21 71 0 0 chr4 170283063 170283105 -32045242 + AT_rich Low_complexity Low_complexity 1 42 0 282 279 143 20 chr4 170283576 170283723 -32044624 + L2 LINE L2 3143 3307 -6 21 0 0 0 chr4 170283785 170283806 -32044541 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr4 170284139 170284180 -32044167 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr4 170285313 170285335 -32043012 + AT_rich Low_complexity Low_complexity 1 22 0 201 147 0 0 chr4 170286987 170287021 -32041326 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 299 181 0 28 chr4 170287484 170287556 -32040791 + CT-rich Low_complexity Low_complexity 1 70 0 945 141 0 11 chr4 170287559 170287736 -32040611 + (TTCC)n Simple_repeat Simple_repeat 4 178 0 1134 133 6 0 chr4 170287753 170287918 -32040429 - AluSg/x SINE Alu -35 275 110 279 167 100 17 chr4 170287919 170287979 -32040368 + L1MCb LINE L1 498 562 -5483 31 26 0 0 chr4 170289072 170289110 -32039237 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr4 170289437 170289460 -32038887 + AT_rich Low_complexity Low_complexity 1 23 0 2716 178 32 24 chr4 170289607 170289946 -32038401 - L1MB3 LINE L1 -2 6181 5846 2248 92 0 16 chr4 170289946 170290251 -32038096 - AluY SINE Alu -11 300 1 2716 178 32 24 chr4 170290251 170290412 -32037935 - L1MB3 LINE L1 -337 5846 5673 1878 210 3 8 chr4 170290412 170290779 -32037568 + MLT1A1 LTR MaLR 1 365 0 2716 178 32 24 chr4 170290779 170290872 -32037475 - L1MB3 LINE L1 -510 5673 5582 3389 108 10 6 chr4 170290907 170291416 -32036931 - MER9 LTR ERVK 0 511 1 21 0 0 0 chr4 170293312 170293333 -32035014 + AT_rich Low_complexity Low_complexity 1 21 0 2045 121 11 0 chr4 170293363 170293684 -32034663 - AluSx SINE Alu 0 326 3 1063 303 134 28 chr4 170293798 170294336 -32034011 - MLT1G1 LTR MaLR 0 595 1 208 143 0 0 chr4 170294560 170294595 -32033752 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 268 325 74 61 chr4 170294686 170295144 -32033203 + L2 LINE L2 1632 2095 -1219 235 341 67 34 chr4 170295655 170295983 -32032364 + L2 LINE L2 2449 2787 -527 200 200 40 0 chr4 170296287 170296337 -32032010 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 1533 245 29 20 chr4 170296409 170296906 -32031441 + MER89 LTR ERV1 3 559 0 3197 289 64 60 chr4 170296913 170297096 -32031251 + MER89-int LTR ERV1 8 189 -6612 1662 164 91 6 chr4 170297096 170297438 -32030909 - THE1C LTR MaLR -4 371 1 3197 289 64 60 chr4 170297438 170298040 -32030307 + MER89-int LTR ERV1 189 787 -6014 1919 147 50 32 chr4 170298040 170298420 -32029927 + MLT1B LTR MaLR 2 388 -2 3197 289 64 60 chr4 170298420 170299174 -32029173 + MER89-int LTR ERV1 787 1554 -5247 6126 233 74 29 chr4 170299188 170299811 -32028536 + MER89-int LTR ERV1 4750 5344 -1457 1777 172 0 7 chr4 170299811 170300113 -32028234 - AluJb SINE Alu -12 300 1 6126 233 74 29 chr4 170300113 170301188 -32027159 + MER89-int LTR ERV1 5344 6523 -278 549 221 48 14 chr4 170301192 170301337 -32027010 + MER89 LTR ERV1 396 545 -14 26 30 0 0 chr4 170301354 170301387 -32026960 + AT_rich Low_complexity Low_complexity 1 33 0 218 167 42 0 chr4 170301463 170301511 -32026836 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 215 214 0 0 chr4 170301569 170301611 -32026736 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 11567 125 10 106 chr4 170302162 170304527 -32023820 + L1P LINE L1 22 2159 -3987 * 15042 53 3 102 chr4 170304513 170306914 -32021433 - L1P LINE L1 -2031 4115 1952 1236 69 0 0 chr4 170306911 170307070 -32021277 - L1P LINE L1 -4537 1609 1451 * 3597 47 5 0 chr4 170307069 170307514 -32020833 + L1PA6 LINE L1 5303 5749 -405 1636 95 13 0 chr4 170307516 170307747 -32020600 + L1PA6 LINE L1 5910 6143 -11 480 215 23 77 chr4 170307905 170308035 -32020312 - FLAM_C SINE Alu -15 128 6 371 306 44 32 chr4 170308061 170308309 -32020038 - L1M4 LINE L1 -1042 5104 4854 3337 207 23 31 chr4 170308314 170309188 -32019159 - L1M3 LINE L1 -908 5238 4372 1967 152 43 9 chr4 170309188 170309598 -32018749 + L1M3 LINE L1 5217 5640 -528 1184 301 51 25 chr4 170309593 170310397 -32017950 - L1M4 LINE L1 -1319 4827 4003 * 254 174 10 174 chr4 170310397 170310495 -32017852 - LTR16B LTR ERVL 0 464 383 2375 320 59 30 chr4 170310495 170311721 -32016626 - HERV16 LTR ERVL -2144 2852 1592 402 302 0 29 chr4 170312728 170312867 -32015480 - HERV16 LTR ERVL -4547 449 315 665 336 98 11 chr4 170313389 170313666 -32014681 - LTR16B LTR ERVL -8 456 156 237 298 53 23 chr4 170313775 170313906 -32014441 - L1MEc LINE L1 -6185 211 77 2072 306 65 38 chr4 170314506 170315088 -32013259 - L1PA16 LINE L1 -2 6164 5567 2414 155 27 70 chr4 170315093 170315181 -32013166 + L1PA6 LINE L1 5254 5344 -822 6538 46 24 26 chr4 170315181 170316065 -32012282 + L1PA6 LINE L1 5272 6153 -1 2414 155 27 70 chr4 170316065 170316487 -32011860 + L1PA6 LINE L1 5344 5742 -424 29 28 0 0 chr4 170316826 170316862 -32011485 + AT_rich Low_complexity Low_complexity 1 36 0 30 45 0 0 chr4 170317914 170317958 -32010389 + AT_rich Low_complexity Low_complexity 1 44 0 2446 80 0 0 chr4 170318694 170319005 -32009342 - AluY SINE Alu 0 311 1 1438 194 20 24 chr4 170320441 170320734 -32007613 - AluSx SINE Alu -10 302 11 266 357 36 0 chr4 170320992 170321104 -32007243 - MER5B DNA MER1_type -3 175 60 902 237 17 49 chr4 170321104 170321391 -32006956 - L1MC4 LINE L1 -896 6988 6632 260 278 28 0 chr4 170321460 170321532 -32006815 - L1MC4a LINE L1 -1091 6717 6644 474 236 60 81 chr4 170321580 170321720 -32006627 - L1MC4 LINE L1 -1322 6720 6587 2201 124 0 0 chr4 170321720 170322019 -32006328 - AluSq SINE Alu -14 299 1 474 236 60 81 chr4 170322019 170322162 -32006185 - L1MC4 LINE L1 -1455 6587 6443 595 196 13 0 chr4 170322325 170322478 -32005869 + GA-rich Low_complexity Low_complexity 2 156 0 890 75 0 0 chr4 170322478 170322585 -32005762 - AluSc SINE Alu -201 108 2 214 244 61 73 chr4 170324130 170324212 -32004135 + MIR SINE MIR 36 116 -146 23 0 0 0 chr4 170324982 170325005 -32003342 + AT_rich Low_complexity Low_complexity 1 23 0 2251 96 0 0 chr4 170325223 170325516 -32002831 + AluSg SINE Alu 1 293 -17 28 0 0 0 chr4 170326069 170326097 -32002250 + AT_rich Low_complexity Low_complexity 1 28 0 240 281 193 49 chr4 170326688 170327015 -32001332 + L2 LINE L2 2898 3271 -42 267 333 54 23 chr4 170327376 170327505 -32000842 - L2 LINE L2 0 3313 3181 27 29 0 0 chr4 170328368 170328402 -31999945 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr4 170330113 170330143 -31998204 + AT_rich Low_complexity Low_complexity 1 30 0 671 118 0 0 chr4 170330888 170330981 -31997366 - AluSg SINE Alu -204 106 14 1345 93 0 6 chr4 170330981 170331164 -31997183 + AluSg/x SINE Alu 120 301 -9 382 283 20 6 chr4 170331216 170331380 -31996967 - L1MEc LINE L1 -864 2037 1837 242 271 0 0 chr4 170331575 170331645 -31996702 - L1MEc LINE L1 -4911 1629 1560 25 83 0 0 chr4 170331694 170331754 -31996593 + AT_rich Low_complexity Low_complexity 1 60 0 31 0 0 0 chr4 170332402 170332433 -31995914 + AT_rich Low_complexity Low_complexity 1 31 0 435 343 120 9 chr4 170333260 170333476 -31994871 + MIR SINE MIR 20 259 -3 256 114 0 43 chr4 170333561 170333631 -31994716 + (ATTTG)n Simple_repeat Simple_repeat 3 69 0 26 107 0 0 chr4 170333631 170333734 -31994613 + AT_rich Low_complexity Low_complexity 1 103 0 2379 265 44 12 chr4 170334993 170335966 -31992381 - L1MCa LINE L1 -2912 3652 2649 1114 237 140 63 chr4 170336036 170336781 -31991566 - L1MCa LINE L1 -3947 2617 1690 628 106 0 0 chr4 170336781 170336875 -31991472 + L1PB1 LINE L1 6050 6143 -8 1114 237 140 63 chr4 170336875 170337097 -31991250 - L1MCa LINE L1 -4874 1690 1486 1102 225 63 13 chr4 170337151 170337453 -31990894 - L1MB8 LINE L1 -1 6177 5861 1228 209 41 22 chr4 170337550 170337913 -31990434 - L1MCa LINE L1 -5221 1343 974 723 232 17 11 chr4 170337921 170338102 -31990245 - L1MCa LINE L1 -5160 885 704 1054 236 36 0 chr4 170338102 170338327 -31990020 + MER67B LTR ERV1 1 233 -428 1440 239 73 6 chr4 170338338 170338693 -31989654 - MSTD LTR MaLR -17 379 1 1985 245 54 10 chr4 170338693 170339178 -31989169 - MSTD-int LTR MaLR -1 1734 1229 1500 121 110 43 chr4 170339192 170339473 -31988874 - LTR10A LTR ERV1 -62 547 248 327 262 141 58 chr4 170339666 170339872 -31988475 - LTR10A LTR ERV1 -374 235 13 3802 259 21 40 chr4 170339944 170341058 -31987289 - MSTD-int LTR MaLR -641 1094 2 1003 224 50 53 chr4 170341060 170341377 -31986970 - MSTD LTR MaLR 0 396 76 1632 237 42 5 chr4 170341604 170342027 -31986320 + MER67B LTR ERV1 71 661 0 26 30 0 0 chr4 170342536 170342569 -31985778 + AT_rich Low_complexity Low_complexity 1 33 0 1018 146 92 0 chr4 170342808 170342972 -31985375 + THE1B LTR MaLR 1 179 -185 6799 116 11 3 chr4 170342972 170343961 -31984386 + THE1B-int LTR MaLR 582 1578 -2 1717 180 47 42 chr4 170343964 170344325 -31984022 + THE1B LTR MaLR 2 364 0 1019 225 19 0 chr4 170344466 170344679 -31983668 - MER20 DNA MER1_type -1 218 2 1755 153 0 20 chr4 170344786 170345080 -31983267 - AluSx SINE Alu -24 288 1 914 33 5 4 chr4 170345141 170345266 -31983081 + L1PA4 LINE L1 4269 4394 -1752 8230 32 0 0 chr4 170345366 170347120 -31981227 + L1PA4 LINE L1 4397 6150 -5 23 68 0 0 chr4 170347128 170347172 -31981175 + AT_rich Low_complexity Low_complexity 1 44 0 2266 177 9 25 chr4 170347429 170347864 -31980483 + MSTA LTR MaLR 1 428 0 264 77 0 0 chr4 170348422 170348461 -31979886 + (CA)n Simple_repeat Simple_repeat 2 40 0 262 325 53 41 chr4 170348529 170348698 -31979649 + LTR16A1 LTR ERVL 73 243 -214 702 171 10 78 chr4 170348714 170348907 -31979440 - MER53 DNA DNA -7 182 3 356 270 36 9 chr4 170348934 170349045 -31979302 + LTR16A LTR ERVL 325 438 -12 1058 331 54 31 chr4 170349620 170350209 -31978138 + HERV16 LTR ERVL 588 1190 -3806 2494 341 64 25 chr4 170350350 170351802 -31976545 + HERV16 LTR ERVL 1452 2948 -2048 1112 373 45 21 chr4 170352303 170353175 -31975172 + HERV16 LTR ERVL 4146 5038 -726 4433 115 15 51 chr4 170353177 170354226 -31974121 - MER11A LTR ERVK 0 1266 1 346 358 71 56 chr4 170354454 170354862 -31973485 - LTR16B LTR ERVL 0 464 51 222 243 14 14 chr4 170355346 170355416 -31972931 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 351 240 19 0 chr4 170355758 170355862 -31972485 - L1MA10 LINE L1 -28 6306 6201 * 5830 188 17 6 chr4 170355856 170357956 -31970391 + L1PB3 LINE L1 4027 6154 0 22 80 0 0 chr4 170359576 170359626 -31968721 + AT_rich Low_complexity Low_complexity 1 50 0 351 0 0 0 chr4 170359888 170359927 -31968420 + (CA)n Simple_repeat Simple_repeat 1 39 0 206 140 0 20 chr4 170360621 170360671 -31967676 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 960 232 57 0 chr4 170360982 170361193 -31967154 - MER58A DNA MER1_type 0 224 2 449 261 77 39 chr4 170361202 170361332 -31967015 + MER5A DNA MER1_type 1 135 -54 463 298 23 0 chr4 170361359 170361490 -31966857 - MER5A DNA MER1_type -46 143 10 294 225 92 70 chr4 170361777 170361919 -31966428 - L2 LINE L2 -4 3309 3165 318 299 92 68 chr4 170362301 170362582 -31965765 + L2 LINE L2 3023 3310 -3 207 348 33 11 chr4 170363097 170363189 -31965158 - MIR SINE MIR -120 142 49 1010 249 15 62 chr4 170363441 170363778 -31964569 + MER58B DNA MER1_type 20 340 -1 366 225 113 21 chr4 170363778 170363915 -31964432 + MLT1J LTR MaLR 46 195 -316 234 222 49 37 chr4 170363988 170364069 -31964278 + MLT1J LTR MaLR 430 511 0 1143 142 4 92 chr4 170364641 170364881 -31963466 + MLT2D LTR ERVL 1 219 -195 365 145 66 13 chr4 170364883 170364917 -31963430 + MLT2D LTR ERVL 335 366 -48 225 0 0 0 chr4 170364917 170364942 -31963405 + (CA)n Simple_repeat Simple_repeat 2 26 0 365 145 66 13 chr4 170364942 170364983 -31963364 + MLT2D LTR ERVL 366 414 0 297 158 50 30 chr4 170365054 170365155 -31963192 + (TATAA)n Simple_repeat Simple_repeat 4 106 0 759 197 14 0 chr4 170365184 170365331 -31963016 - FAM SINE Alu -35 150 2 476 202 29 19 chr4 170367166 170367270 -31961077 + LTR69 LTR ERVL 26 130 -458 368 301 71 53 chr4 170368579 170369646 -31958701 - L1MDb LINE L1 -4353 2368 1256 38 39 0 0 chr4 170369671 170369723 -31958624 + AT_rich Low_complexity Low_complexity 1 52 0 32 75 0 0 chr4 170372066 170372133 -31956214 + AT_rich Low_complexity Low_complexity 1 67 0 28 48 0 0 chr4 170373033 170373075 -31955272 + AT_rich Low_complexity Low_complexity 1 42 0 1919 138 7 0 chr4 170374007 170374305 -31954042 - AluSg SINE Alu -10 300 1 26 30 0 0 chr4 170374345 170374378 -31953969 + AT_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr4 170374392 170374433 -31953914 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr4 170374724 170374749 -31953598 + AT_rich Low_complexity Low_complexity 1 25 0 341 303 26 19 chr4 170375734 170375889 -31952458 - L1M4 LINE L1 -2497 3649 3494 779 219 12 24 chr4 170375907 170376076 -31952271 + FRAM SINE Alu 3 169 -7 1253 289 102 41 chr4 170376120 170377020 -31951327 - L1M4 LINE L1 -2875 3271 2291 2246 114 0 0 chr4 170377020 170377318 -31951029 + AluSq SINE Alu 1 298 -15 1253 289 102 41 chr4 170377318 170377500 -31950847 - L1M4 LINE L1 -3855 2291 2122 1316 235 43 69 chr4 170377618 170378015 -31950332 - L1MA9 LINE L1 -122 6190 5801 1775 184 23 0 chr4 170378015 170378320 -31950027 - AluJb SINE Alu 0 312 1 1316 235 43 69 chr4 170378320 170378467 -31949880 - L1MA9 LINE L1 -511 5801 5652 361 319 96 16 chr4 170378993 170379181 -31949166 - HAL1 LINE L1 -1349 1158 956 403 92 73 0 chr4 170379237 170379346 -31949001 + (TCTA)n Simple_repeat Simple_repeat 4 120 0 310 105 0 0 chr4 170380613 170380670 -31947677 - LTR66 LTR ERVL -160 450 394 255 202 28 0 chr4 170380680 170380789 -31947558 + (TA)n Simple_repeat Simple_repeat 2 113 0 32 26 0 0 chr4 170381203 170381242 -31947105 + AT_rich Low_complexity Low_complexity 1 39 0 648 255 84 108 chr4 170381293 170381656 -31946691 - L1ME1 LINE L1 -1 6165 5814 243 0 0 0 chr4 170381656 170381683 -31946664 + (TG)n Simple_repeat Simple_repeat 2 28 0 648 255 84 108 chr4 170381683 170381782 -31946565 - L1ME1 LINE L1 -352 5814 5714 22 56 0 0 chr4 170381782 170381818 -31946529 + AT_rich Low_complexity Low_complexity 1 36 0 405 0 0 0 chr4 170382526 170382571 -31945776 + (TA)n Simple_repeat Simple_repeat 1 45 0 1409 146 16 167 chr4 170382812 170383254 -31945093 + MER67C LTR ERV1 5 403 -243 254 184 20 0 chr4 170383323 170383372 -31944975 + MER67D LTR ERV1 431 480 -34 461 79 0 0 chr4 170383372 170383435 -31944912 - AluY SINE Alu -8 302 240 1906 57 0 8 chr4 170383475 170383720 -31944627 - AluY SINE Alu -66 245 3 1701 53 0 5 chr4 170384358 170384596 -31943751 + AluY SINE Alu 76 312 0 1396 253 58 29 chr4 170385294 170385740 -31942607 + L1MCb LINE L1 1 459 -5586 485 119 0 12 chr4 170385754 170385838 -31942509 + (TTCC)n Simple_repeat Simple_repeat 4 86 0 688 293 60 36 chr4 170585894 170586179 -31742168 - L1M4 LINE L1 -3546 2600 2298 2246 114 0 0 chr4 170586179 170586477 -31741870 + AluSq SINE Alu 1 298 -15 688 293 60 36 chr4 170586477 170586659 -31741688 - L1M4 LINE L1 -3848 2298 2122 1316 235 43 69 chr4 170586777 170587174 -31741173 - L1MA9 LINE L1 -122 6190 5801 1775 184 23 0 chr4 170587174 170587479 -31740868 - AluJb SINE Alu 0 312 1 1316 235 43 69 chr4 170587479 170587626 -31740721 - L1MA9 LINE L1 -511 5801 5652 361 319 96 16 chr4 170588152 170588340 -31740007 - HAL1 LINE L1 -1349 1158 956 403 92 73 0 chr4 170588396 170588505 -31739842 + (TCTA)n Simple_repeat Simple_repeat 4 120 0 310 105 0 0 chr4 170589772 170589829 -31738518 - LTR66 LTR ERVL -160 450 394 255 202 28 0 chr4 170589839 170589948 -31738399 + (TA)n Simple_repeat Simple_repeat 2 113 0 32 26 0 0 chr4 170590362 170590401 -31737946 + AT_rich Low_complexity Low_complexity 1 39 0 648 255 84 108 chr4 170590452 170590815 -31737532 - L1ME1 LINE L1 -1 6165 5814 243 0 0 0 chr4 170590815 170590842 -31737505 + (TG)n Simple_repeat Simple_repeat 2 28 0 648 255 84 108 chr4 170590842 170590941 -31737406 - L1ME1 LINE L1 -352 5814 5714 22 56 0 0 chr4 170590941 170590977 -31737370 + AT_rich Low_complexity Low_complexity 1 36 0 405 0 0 0 chr4 170591685 170591730 -31736617 + (TA)n Simple_repeat Simple_repeat 2 46 0 1424 146 16 167 chr4 170591971 170592413 -31735934 + MER67C LTR ERV1 5 403 -243 254 184 20 0 chr4 170592482 170592531 -31735816 + MER67D LTR ERV1 431 480 -34 461 79 0 0 chr4 170592531 170592594 -31735753 - AluY SINE Alu -8 302 240 1906 57 0 8 chr4 170592634 170592879 -31735468 - AluY SINE Alu -66 245 3 1701 53 0 5 chr4 170593517 170593755 -31734592 + AluY SINE Alu 76 312 0 1396 253 58 29 chr4 170594453 170594899 -31733448 + L1MCb LINE L1 1 459 -5586 981 129 0 16 chr4 170594913 170595218 -31733129 + (TTCC)n Simple_repeat Simple_repeat 1 480 0 1134 133 6 0 chr4 170595234 170595399 -31732948 - AluSg/x SINE Alu -35 277 112 279 167 100 17 chr4 170595400 170595460 -31732887 + L1MCb LINE L1 498 562 -5483 31 26 0 0 chr4 170596553 170596591 -31731756 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr4 170596918 170596941 -31731406 + AT_rich Low_complexity Low_complexity 1 23 0 2716 178 32 24 chr4 170597088 170597427 -31730920 - L1MB3 LINE L1 -2 6181 5846 2248 92 0 16 chr4 170597427 170597732 -31730615 - AluY SINE Alu -11 300 1 2716 178 32 24 chr4 170597732 170597893 -31730454 - L1MB3 LINE L1 -337 5846 5673 1878 210 3 8 chr4 170597893 170598260 -31730087 + MLT1A1 LTR MaLR 1 365 0 2716 178 32 24 chr4 170598260 170598353 -31729994 - L1MB3 LINE L1 -510 5673 5582 3389 108 10 6 chr4 170598388 170598897 -31729450 - MER9 LTR ERVK 0 511 1 21 0 0 0 chr4 170600793 170600814 -31727533 + AT_rich Low_complexity Low_complexity 1 21 0 2045 121 11 0 chr4 170600844 170601165 -31727182 - AluSx SINE Alu 0 326 3 1063 303 134 28 chr4 170601279 170601817 -31726530 - MLT1G1 LTR MaLR 0 595 1 208 143 0 0 chr4 170602041 170602076 -31726271 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 268 325 74 61 chr4 170602167 170602625 -31725722 + L2 LINE L2 1632 2095 -1219 235 341 67 34 chr4 170603136 170603464 -31724883 + L2 LINE L2 2449 2787 -527 200 200 40 0 chr4 170603768 170603818 -31724529 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 1533 245 29 20 chr4 170603890 170604387 -31723960 + MER89 LTR ERV1 3 559 0 3197 289 64 60 chr4 170604394 170604577 -31723770 + MER89-int LTR ERV1 8 189 -6612 1662 164 91 6 chr4 170604577 170604919 -31723428 - THE1C LTR MaLR -4 371 1 3197 289 64 60 chr4 170604919 170605521 -31722826 + MER89-int LTR ERV1 189 787 -6014 1919 147 50 32 chr4 170605521 170605901 -31722446 + MLT1B LTR MaLR 2 388 -2 3197 289 64 60 chr4 170605901 170606655 -31721692 + MER89-int LTR ERV1 787 1554 -5247 6126 233 74 29 chr4 170606669 170607292 -31721055 + MER89-int LTR ERV1 4750 5344 -1457 1777 172 0 7 chr4 170607292 170607594 -31720753 - AluJb SINE Alu -12 300 1 6126 233 74 29 chr4 170607594 170608669 -31719678 + MER89-int LTR ERV1 5344 6523 -278 549 221 48 14 chr4 170608673 170608818 -31719529 + MER89 LTR ERV1 396 545 -14 26 30 0 0 chr4 170608835 170608868 -31719479 + AT_rich Low_complexity Low_complexity 1 33 0 218 167 42 0 chr4 170608944 170608992 -31719355 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 215 214 0 0 chr4 170609050 170609092 -31719255 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 13059 137 11 19 chr4 170609643 170611799 -31716548 + L1P LINE L1 22 2159 -3987 * 15042 53 3 102 chr4 170611785 170614186 -31714161 - L1P LINE L1 -2031 4115 1952 1236 69 0 0 chr4 170614183 170614342 -31714005 - L1P LINE L1 -4537 1609 1451 * 3597 47 5 0 chr4 170614341 170614786 -31713561 + L1PA6 LINE L1 5303 5749 -405 1636 95 13 0 chr4 170614788 170615019 -31713328 + L1PA6 LINE L1 5910 6143 -11 646 200 0 54 chr4 170615177 170615307 -31713040 - FLAM_C SINE Alu -15 128 6 371 306 44 32 chr4 170615333 170615581 -31712766 - L1M4 LINE L1 -1042 5104 4854 3343 207 23 30 chr4 170615586 170616459 -31711888 - L1M3 LINE L1 -908 5238 4372 1967 152 43 9 chr4 170616459 170616869 -31711478 + L1M3 LINE L1 5217 5640 -528 1184 301 51 25 chr4 170616864 170617668 -31710679 - L1M4 LINE L1 -1319 4827 4003 * 254 174 10 174 chr4 170617668 170617766 -31710581 - LTR16B LTR ERVL 0 464 383 2375 322 59 29 chr4 170617766 170618991 -31709356 - HERV16 LTR ERVL -2144 2852 1592 402 302 0 29 chr4 170619998 170620137 -31708210 - HERV16 LTR ERVL -4547 449 315 665 336 98 11 chr4 170620659 170620936 -31707411 - LTR16B LTR ERVL -8 456 156 237 298 53 23 chr4 170621045 170621176 -31707171 - L1MEc LINE L1 -6185 211 77 3081 160 21 36 chr4 170621776 170622383 -31705964 - L1PA16 LINE L1 -2 6164 5567 2414 155 27 70 chr4 170622388 170622476 -31705871 + L1PA6 LINE L1 5254 5344 -822 6538 46 24 26 chr4 170622476 170623360 -31704987 + L1PA6 LINE L1 5272 6153 -1 2414 155 27 70 chr4 170623360 170623782 -31704565 + L1PA6 LINE L1 5344 5742 -424 29 28 0 0 chr4 170624121 170624157 -31704190 + AT_rich Low_complexity Low_complexity 1 36 0 30 45 0 0 chr4 170625209 170625253 -31703094 + AT_rich Low_complexity Low_complexity 1 44 0 2496 74 0 0 chr4 170625990 170626301 -31702046 - AluY SINE Alu 0 311 1 1453 191 20 24 chr4 170627737 170628030 -31700317 - AluSx SINE Alu -10 302 11 266 357 36 0 chr4 170628288 170628400 -31699947 - MER5B DNA MER1_type -3 175 60 902 237 17 49 chr4 170628400 170628687 -31699660 - L1MC4 LINE L1 -896 6988 6632 260 278 28 0 chr4 170628756 170628828 -31699519 - L1MC4a LINE L1 -1091 6717 6644 474 236 60 81 chr4 170628876 170629016 -31699331 - L1MC4 LINE L1 -1322 6720 6587 2201 124 0 0 chr4 170629016 170629315 -31699032 - AluSq SINE Alu -14 299 1 474 236 60 81 chr4 170629315 170629458 -31698889 - L1MC4 LINE L1 -1455 6587 6443 595 196 13 0 chr4 170629621 170629774 -31698573 + GA-rich Low_complexity Low_complexity 2 156 0 890 75 0 0 chr4 170629774 170629881 -31698466 - AluSc SINE Alu -201 108 2 214 244 61 73 chr4 170631426 170631508 -31696839 + MIR SINE MIR 36 116 -146 23 0 0 0 chr4 170632278 170632301 -31696046 + AT_rich Low_complexity Low_complexity 1 23 0 2251 96 0 0 chr4 170632519 170632812 -31695535 + AluSg SINE Alu 1 293 -17 28 0 0 0 chr4 170633365 170633393 -31694954 + AT_rich Low_complexity Low_complexity 1 28 0 240 281 193 49 chr4 170633984 170634311 -31694036 + L2 LINE L2 2898 3271 -42 267 333 54 23 chr4 170634672 170634801 -31693546 - L2 LINE L2 0 3313 3181 27 29 0 0 chr4 170635664 170635698 -31692649 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr4 170637409 170637439 -31690908 + AT_rich Low_complexity Low_complexity 1 30 0 671 118 0 0 chr4 170638184 170638277 -31690070 - AluSg SINE Alu -204 106 14 1345 93 0 6 chr4 170638277 170638460 -31689887 + AluSg/x SINE Alu 122 303 -9 350 291 75 19 chr4 170638519 170638832 -31689515 - L1MEc LINE L1 -4611 1968 1560 25 83 0 0 chr4 170638881 170638941 -31689406 + AT_rich Low_complexity Low_complexity 1 60 0 31 0 0 0 chr4 170639589 170639620 -31688727 + AT_rich Low_complexity Low_complexity 1 31 0 435 343 120 9 chr4 170640447 170640663 -31687684 + MIR SINE MIR 20 259 -3 256 114 0 43 chr4 170640748 170640818 -31687529 + (ATTTG)n Simple_repeat Simple_repeat 3 69 0 26 107 0 0 chr4 170640818 170640921 -31687426 + AT_rich Low_complexity Low_complexity 1 103 0 2379 265 44 12 chr4 170642180 170643153 -31685194 - L1MCa LINE L1 -2912 3652 2649 1114 237 140 63 chr4 170643223 170643968 -31684379 - L1MCa LINE L1 -3947 2617 1690 628 106 0 0 chr4 170643968 170644062 -31684285 + L1PB1 LINE L1 6050 6143 -8 1114 237 140 63 chr4 170644062 170644284 -31684063 - L1MCa LINE L1 -4874 1690 1486 1102 225 63 13 chr4 170644338 170644640 -31683707 - L1MB8 LINE L1 -1 6177 5861 1228 209 41 22 chr4 170644737 170645100 -31683247 - L1MCa LINE L1 -5221 1343 974 723 232 17 11 chr4 170645108 170645289 -31683058 - L1MCa LINE L1 -5160 885 704 1054 236 36 0 chr4 170645289 170645514 -31682833 + MER67B LTR ERV1 1 233 -428 1440 239 73 6 chr4 170645525 170645880 -31682467 - MSTD LTR MaLR -17 379 1 1985 245 54 10 chr4 170645880 170646365 -31681982 - MSTD-int LTR MaLR -1 1734 1229 1500 121 110 43 chr4 170646379 170646660 -31681687 - LTR10A LTR ERV1 -62 547 248 327 262 141 58 chr4 170646853 170647059 -31681288 - LTR10A LTR ERV1 -374 235 13 3802 259 21 40 chr4 170647131 170648245 -31680102 - MSTD-int LTR MaLR -641 1094 2 1003 224 50 53 chr4 170648247 170648564 -31679783 - MSTD LTR MaLR 0 396 76 1632 237 42 5 chr4 170648791 170649214 -31679133 + MER67B LTR ERV1 71 661 0 26 30 0 0 chr4 170650531 170650564 -31677783 + AT_rich Low_complexity Low_complexity 1 33 0 1018 146 92 0 chr4 170650803 170650967 -31677380 + THE1B LTR MaLR 1 179 -185 6799 116 11 3 chr4 170650967 170651956 -31676391 + THE1B-int LTR MaLR 582 1578 -2 1717 180 47 42 chr4 170651959 170652320 -31676027 + THE1B LTR MaLR 2 364 0 1019 225 19 0 chr4 170652461 170652674 -31675673 - MER20 DNA MER1_type -1 218 2 1755 153 0 20 chr4 170652781 170653075 -31675272 - AluSx SINE Alu -24 288 1 9174 29 0 0 chr4 170653155 170655017 -31673330 + L1PA4 LINE L1 4289 6150 -5 23 68 0 0 chr4 170655025 170655069 -31673278 + AT_rich Low_complexity Low_complexity 1 44 0 2266 177 9 25 chr4 170655326 170655761 -31672586 + MSTA LTR MaLR 1 428 0 264 77 0 0 chr4 170656319 170656358 -31671989 + (CA)n Simple_repeat Simple_repeat 2 40 0 262 325 53 41 chr4 170656426 170656595 -31671752 + LTR16A1 LTR ERVL 73 243 -214 702 171 10 78 chr4 170656611 170656804 -31671543 - MER53 DNA DNA -7 182 3 356 282 34 8 chr4 170656831 170656948 -31671399 + LTR16A LTR ERVL 325 444 -6 1058 331 54 31 chr4 170657517 170658106 -31670241 + HERVL LTR ERVL 588 1190 -3806 2494 341 64 25 chr4 170658247 170659699 -31668648 + HERVL LTR ERVL 1452 2948 -2048 1355 374 52 23 chr4 170659725 170661131 -31667216 + HERVL LTR ERVL 3604 4955 -699 4433 115 15 51 chr4 170661133 170662182 -31666165 - MER11A LTR ERVK 0 1266 1 346 358 71 56 chr4 170662410 170662818 -31665529 - LTR16B LTR ERVL 0 464 51 222 243 14 14 chr4 170663302 170663372 -31664975 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 351 240 19 0 chr4 170663715 170663819 -31664528 - L1MA10 LINE L1 -28 6306 6201 * 5830 187 17 6 chr4 170663813 170665913 -31662434 + L1PB3 LINE L1 4027 6154 0 22 80 0 0 chr4 170667533 170667583 -31660764 + AT_rich Low_complexity Low_complexity 1 50 0 351 0 0 0 chr4 170667845 170667884 -31660463 + (CA)n Simple_repeat Simple_repeat 1 39 0 206 140 0 20 chr4 170668578 170668628 -31659719 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 960 232 57 0 chr4 170668939 170669150 -31659197 - MER58A DNA MER1_type 0 224 2 449 261 77 39 chr4 170669159 170669289 -31659058 + MER5A DNA MER1_type 1 135 -54 463 298 23 0 chr4 170669316 170669447 -31658900 - MER5A DNA MER1_type -46 143 10 294 225 92 70 chr4 170669734 170669876 -31658471 - L2 LINE L2 -4 3309 3165 318 299 92 68 chr4 170670258 170670539 -31657808 + L2 LINE L2 3023 3310 -3 207 348 33 11 chr4 170671057 170671149 -31657198 - MIR SINE MIR -120 142 49 1010 249 15 62 chr4 170671401 170671738 -31656609 + MER58B DNA MER1_type 20 340 -1 366 225 113 21 chr4 170671738 170671875 -31656472 + MLT1J LTR MaLR 46 195 -316 234 222 49 37 chr4 170671948 170672029 -31656318 + MLT1J LTR MaLR 430 511 0 1143 142 4 92 chr4 170672601 170672841 -31655506 + MLT2D LTR ERVL 1 219 -195 365 145 66 13 chr4 170672843 170672877 -31655470 + MLT2D LTR ERVL 335 366 -48 225 0 0 0 chr4 170672877 170672902 -31655445 + (CA)n Simple_repeat Simple_repeat 2 26 0 365 145 66 13 chr4 170672902 170672943 -31655404 + MLT2D LTR ERVL 366 414 0 297 158 50 30 chr4 170673014 170673115 -31655232 + (TATAA)n Simple_repeat Simple_repeat 4 106 0 759 197 14 0 chr4 170673144 170673291 -31655056 - FAM SINE Alu -35 150 2 476 202 29 19 chr4 170675126 170675230 -31653117 + LTR69 LTR ERVL 26 130 -458 368 302 70 53 chr4 170676538 170677605 -31650742 - L1MDb LINE L1 -4353 2368 1256 38 39 0 0 chr4 170677630 170677682 -31650665 + AT_rich Low_complexity Low_complexity 1 52 0 32 75 0 0 chr4 170680024 170680091 -31648256 + AT_rich Low_complexity Low_complexity 1 67 0 28 48 0 0 chr4 170680991 170681033 -31647314 + AT_rich Low_complexity Low_complexity 1 42 0 2682 99 8 3 chr4 170681182 170681554 -31646793 + THE1C LTR MaLR 2 375 0 2155 116 0 0 chr4 170682363 170682657 -31645690 - AluSx SINE Alu -18 294 1 212 400 11 0 chr4 170683893 170683983 -31644364 + L2 LINE L2 3182 3272 0 12444 59 2 1 chr4 170685093 170687472 -31640875 + L1PA5 LINE L1 3767 6154 0 25 0 0 0 chr4 170687857 170687882 -31640465 + AT_rich Low_complexity Low_complexity 1 25 0 696 326 88 15 chr4 170688623 170688963 -31639384 + L2 LINE L2 2396 2760 -554 3321 188 60 12 chr4 170688963 170689644 -31638703 + MER50 LTR ERV1 1 714 -20 261 150 0 0 chr4 170689644 170689684 -31638663 + MER50-int LTR ERV1 3 42 -7163 891 181 165 23 chr4 170689706 170689972 -31638375 - LTR10A LTR ERV1 -209 400 97 29 28 0 0 chr4 170690055 170690091 -31638256 + AT_rich Low_complexity Low_complexity 1 36 0 1099 288 33 23 chr4 170690155 170690641 -31637706 + L1ME3A LINE L1 3527 4017 -2129 348 266 113 61 chr4 170690650 170690879 -31637468 + L1ME3A LINE L1 4204 4444 -1702 375 337 52 52 chr4 170690890 170691234 -31637113 + L2 LINE L2 2970 3313 0 447 341 27 9 chr4 170691399 170691619 -31636728 + L1ME3A LINE L1 5610 5833 -337 259 159 0 0 chr4 170691680 170691724 -31636623 - L1MA8 LINE L1 -167 6124 6081 693 139 0 0 chr4 170691730 170691845 -31636502 + L1MA8 LINE L1 6166 6280 -11 224 241 0 25 chr4 170691876 170691955 -31636392 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 1818 182 60 3 chr4 170692361 170692712 -31635635 - MSTB1 LTR MaLR 0 432 62 30 0 0 0 chr4 170692860 170692890 -31635457 + AT_rich Low_complexity Low_complexity 1 30 0 231 214 0 0 chr4 170693446 170693502 -31634845 + T-rich Low_complexity Low_complexity 1 56 0 519 264 55 57 chr4 170694115 170694330 -31634017 - MER61D LTR ERV1 -10 750 233 2722 29 0 0 chr4 170695650 170695956 -31632391 - AluY SINE Alu -5 306 1 1935 104 26 26 chr4 170696113 170696420 -31631927 + AluSq SINE Alu 1 307 -6 1942 109 0 0 chr4 170696429 170696695 -31631652 + AluSc SINE Alu 11 276 -33 217 214 0 0 chr4 170697458 170697500 -31630847 + (CA)n Simple_repeat Simple_repeat 1 42 0 32 86 0 0 chr4 170697732 170697813 -31630534 + AT_rich Low_complexity Low_complexity 1 81 0 255 277 27 9 chr4 170697952 170698064 -31630283 + (TA)n Simple_repeat Simple_repeat 2 115 0 1222 257 49 120 chr4 170698232 170698812 -31629535 + MLT1E2 LTR MaLR 1 528 -98 433 123 99 0 chr4 170698812 170698893 -31629454 + L1MA1 LINE L1 6214 6302 0 1222 257 49 120 chr4 170698893 170698986 -31629361 + MLT1E2 LTR MaLR 528 626 0 306 315 55 14 chr4 170698994 170699156 -31629191 - L1MC4a LINE L1 -1925 5883 5708 1728 135 58 9 chr4 170699156 170699483 -31628864 + MER61A LTR ERV1 1 343 0 306 315 55 14 chr4 170699483 170699539 -31628808 - L1MC4a LINE L1 -2100 5708 5656 225 0 0 0 chr4 170699784 170699809 -31628538 + (CA)n Simple_repeat Simple_repeat 2 26 0 1520 193 81 3 chr4 170699824 170700120 -31628227 - MER7A DNA MER2_type -9 337 21 189 107 0 0 chr4 170700131 170700159 -31628188 + (CA)n Simple_repeat Simple_repeat 2 29 0 364 340 100 43 chr4 170700185 170700514 -31627833 - L1MC4a LINE L1 -1112 5034 4687 21 36 0 0 chr4 170701040 170701068 -31627279 + AT_rich Low_complexity Low_complexity 1 28 0 27 49 0 0 chr4 170701262 170701303 -31627044 + AT_rich Low_complexity Low_complexity 1 41 0 445 333 108 27 chr4 170701825 170702194 -31626153 - L2 LINE L2 -43 3270 2872 1958 215 34 39 chr4 170704742 170705323 -31623024 - Tigger7 DNA MER2_type 0 2487 11 22 0 0 0 chr4 170705350 170705372 -31622975 + AT_rich Low_complexity Low_complexity 1 22 0 255 221 78 0 chr4 170705380 170705457 -31622890 + L1MC4 LINE L1 6617 6699 -1343 213 216 39 29 chr4 170706589 170706691 -31621656 + (TA)n Simple_repeat Simple_repeat 1 103 0 739 309 50 15 chr4 170707147 170707409 -31620938 - MLT2E LTR ERVL -333 295 25 332 279 12 0 chr4 170707434 170707520 -31620827 - ERVL LTR ERVL -2 5762 5676 * 1143 279 101 52 chr4 170707516 170708066 -31620281 - ERVL LTR ERVL -900 4585 4063 464 48 16 0 chr4 170708066 170708129 -31620218 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 1143 279 101 52 chr4 170708129 170708154 -31620193 - ERVL LTR ERVL -1422 4063 4041 181 0 0 0 chr4 170708154 170708174 -31620173 + (TTTTG)n Simple_repeat Simple_repeat 1 155 0 1808 131 7 11 chr4 170708174 170708456 -31619891 - AluSx SINE Alu -1 300 1 1143 279 101 52 chr4 170708456 170708467 -31619880 - ERVL LTR ERVL -1444 4041 4032 441 0 0 0 chr4 170708467 170708516 -31619831 + (TG)n Simple_repeat Simple_repeat 2 50 0 1143 279 101 52 chr4 170708516 170708872 -31619475 - ERVL LTR ERVL -1453 4032 3591 192 152 0 0 chr4 170709020 170709053 -31619294 + (TA)n Simple_repeat Simple_repeat 2 34 0 30 69 0 0 chr4 170709095 170709153 -31619194 + AT_rich Low_complexity Low_complexity 1 58 0 248 284 9 17 chr4 170711414 170711530 -31616817 + CT-rich Low_complexity Low_complexity 2 116 0 460 306 105 49 chr4 170711625 170712031 -31616316 + LTR16B LTR ERVL 1 429 -35 1730 254 79 52 chr4 170712031 170712776 -31615571 + LTR41 LTR ERVL 3 767 -6 1873 285 71 29 chr4 170716333 170717732 -31610615 + L1MEc LINE L1 1657 3087 -3128 1276 295 29 15 chr4 170718141 170718619 -31609728 - L1ME3 LINE L1 -62 6100 5616 1749 117 16 0 chr4 170718631 170718887 -31609460 + AluSq SINE Alu 3 262 -51 1247 150 85 19 chr4 170718892 170719152 -31609195 - THE1C LTR MaLR -2 373 97 193 244 12 12 chr4 170719152 170719234 -31609113 + (TA)n Simple_repeat Simple_repeat 1 82 0 2050 172 43 38 chr4 170721256 170721808 -31606539 + MLT2A2 LTR ERVL 1 554 0 24 0 0 0 chr4 170723849 170723873 -31604474 + AT_rich Low_complexity Low_complexity 1 24 0 702 249 78 41 chr4 170724419 170724688 -31603659 - L1ME1 LINE L1 -147 6517 6239 * 847 246 113 0 chr4 170724678 170724918 -31603429 + L1ME LINE L1 5415 5681 -485 21 0 0 0 chr4 170725032 170725053 -31603294 + AT_rich Low_complexity Low_complexity 1 21 0 399 300 9 9 chr4 170725287 170725397 -31602950 + MER5B DNA MER1_type 15 124 -54 1430 214 9 71 chr4 170726048 170726553 -31601794 - L1ME1 LINE L1 -417 6261 5826 923 258 97 51 chr4 170726562 170726765 -31601582 - MLT1D LTR MaLR -111 394 202 2362 77 0 3 chr4 170726765 170727075 -31601272 - AluY SINE Alu -2 309 1 923 258 97 51 chr4 170727075 170727243 -31601104 - MLT1D LTR MaLR -303 202 6 495 291 48 121 chr4 170727249 170727890 -31600457 - MLT1D-int LTR MaLR -1 1734 782 * 1191 214 35 14 chr4 170727888 170728177 -31600170 + L1M4 LINE L1 5433 5727 -457 321 236 9 9 chr4 170728175 170728281 -31600066 - L1MEc LINE L1 -5296 1100 995 * 349 281 22 0 chr4 170728377 170728512 -31599835 - L1MEc LINE L1 -5467 929 792 1339 309 77 23 chr4 170728550 170729656 -31598691 - L1ME1 LINE L1 -1471 5173 4008 310 274 63 17 chr4 170729670 170729907 -31598440 - L1ME1 LINE L1 -3997 2828 2581 27 0 0 0 chr4 170729919 170729946 -31598401 + AT_rich Low_complexity Low_complexity 1 27 0 487 240 108 8 chr4 170730189 170730318 -31598029 + MER58A DNA MER1_type 12 153 0 637 298 59 39 chr4 170730365 170730390 -31597957 - L1ME1 LINE L1 -4599 2226 2203 1080 207 28 85 chr4 170730390 170730777 -31597570 - MLT1A1 LTR MaLR 0 365 1 637 298 59 39 chr4 170730777 170731295 -31597052 - L1ME1 LINE L1 -4622 2203 1672 2154 101 0 49 chr4 170731323 170731650 -31596697 - AluSx SINE Alu -1 311 1 455 265 99 50 chr4 170731674 170731917 -31596430 - L1ME1 LINE L1 -5039 1608 1378 2085 133 7 3 chr4 170731917 170732225 -31596122 - AluSq SINE Alu -4 309 1 455 265 99 50 chr4 170732225 170732557 -31595790 - L1ME1 LINE L1 -5269 1378 911 297 326 47 26 chr4 170734044 170734237 -31594110 - MIR SINE MIR -64 198 2 1985 104 7 0 chr4 170734268 170734537 -31593810 + AluSc SINE Alu 6 276 -33 197 32 0 32 chr4 170734537 170734568 -31593779 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1046 260 129 45 chr4 170734989 170735357 -31592990 - MER34B LTR ERV1 -1 564 140 2404 84 0 0 chr4 170735357 170735668 -31592679 - AluY SINE Alu 0 311 1 1046 260 129 45 chr4 170735668 170735811 -31592536 - MER34B LTR ERV1 -425 140 10 21 0 0 0 chr4 170738056 170738077 -31590270 + AT_rich Low_complexity Low_complexity 1 21 0 1665 163 3 39 chr4 170738166 170738472 -31589875 - AluJb SINE Alu -17 295 1 2144 96 26 0 chr4 170738996 170739299 -31589048 - AluY SINE Alu 0 311 1 2295 102 0 6 chr4 170739851 170740165 -31588182 + AluSx SINE Alu 1 312 0 229 290 0 0 chr4 170740323 170740392 -31587955 + T-rich Low_complexity Low_complexity 1 69 0 640 268 92 38 chr4 170740519 170740836 -31587511 + LTR28 LTR ERV1 11 344 -676 473 258 59 94 chr4 170740839 170741066 -31587281 + MER52A LTR ERV1 335 1232 0 3370 177 28 5 chr4 170741511 170742166 -31586181 + L1MC1 LINE L1 5663 6332 -1 1551 167 7 4 chr4 170742173 170742442 -31585905 + AluSx SINE Alu 36 305 -7 1503 216 71 24 chr4 170742726 170743154 -31585193 + MER89 LTR ERV1 7 554 -5 25 83 0 0 chr4 170743287 170743347 -31585000 + AT_rich Low_complexity Low_complexity 1 60 0 501 149 0 0 chr4 170743472 170743546 -31584801 + MER6B DNA MER2_type 1 74 -202 474 212 249 32 chr4 170743613 170743830 -31584517 + MER41B LTR ERV1 157 420 -215 466 301 147 0 chr4 170743842 170744005 -31584342 + MER66B LTR ERV1 298 484 -2 711 216 0 0 chr4 170744007 170744146 -31584201 + MER6B DNA MER2_type 72 210 0 31 82 0 0 chr4 170744331 170744404 -31583943 + AT_rich Low_complexity Low_complexity 1 73 0 3534 165 35 13 chr4 170745323 170745522 -31582825 + L1MA6 LINE L1 5577 5770 -530 312 70 0 0 chr4 170745522 170745565 -31582782 + (CA)n Simple_repeat Simple_repeat 2 44 0 3534 165 35 13 chr4 170745565 170746012 -31582335 + L1MA6 LINE L1 5770 6243 -57 2099 162 89 5 chr4 170746012 170746407 -31581940 - MSTA LTR MaLR 0 428 1 3534 165 35 13 chr4 170746407 170746467 -31581880 + L1MA6 LINE L1 6243 6300 0 767 40 0 0 chr4 170746504 170746603 -31581744 - L1PA5 LINE L1 -1071 5075 4977 7235 41 8 0 chr4 170746603 170747678 -31580669 + L1PA5 LINE L1 5064 6145 -9 31 0 0 0 chr4 170747678 170747709 -31580638 + AT_rich Low_complexity Low_complexity 1 31 0 197 317 0 0 chr4 170748505 170748565 -31579782 - L2 LINE L2 -420 2893 2834 41 48 0 0 chr4 170948743 170948805 -31379542 + AT_rich Low_complexity Low_complexity 1 62 0 2123 119 54 23 chr4 170950149 170950502 -31377845 + THE1B LTR MaLR 1 364 0 676 296 84 48 chr4 170950772 170951405 -31376942 - L1ME LINE L1 -4863 1207 622 201 94 0 0 chr4 170951591 170951623 -31376724 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1520 52 0 0 chr4 170952659 170952850 -31375497 - L1PA5 LINE L1 0 6154 5964 324 120 0 0 chr4 170952868 170952918 -31375429 + (CGTG)n Simple_repeat Simple_repeat 2 51 0 209 222 0 0 chr4 170953908 170953953 -31374394 + T-rich Low_complexity Low_complexity 3 47 0 244 324 81 9 chr4 170954028 170954139 -31374208 + HAL1 LINE L1 1 119 -2388 302 316 15 15 chr4 170954759 170954892 -31373455 + HAL1 LINE L1 757 889 -1618 6523 209 114 36 chr4 170955138 170956764 -31371583 - MER52A LTR ERV1 -1 1754 1 22 56 0 0 chr4 170956810 170956846 -31371501 + AT_rich Low_complexity Low_complexity 1 36 0 228 254 14 0 chr4 170956860 170956931 -31371416 + HAL1 LINE L1 1256 1327 -1180 243 326 11 0 chr4 170957088 170957183 -31371164 + HAL1 LINE L1 1549 1644 -863 347 295 105 68 chr4 170957261 170957984 -31370363 + HAL1 LINE L1 1738 2487 -20 323 276 23 0 chr4 170959820 170959907 -31368440 + L2 LINE L2 3225 3313 0 544 271 97 40 chr4 170961862 170962191 -31366156 - L1ME2 LINE L1 -11 6153 5806 1466 164 91 18 chr4 170962246 170962532 -31365815 - AluSx SINE Alu -3 309 3 318 339 42 54 chr4 170963321 170963489 -31364858 - L1MEc LINE L1 -6194 202 37 442 282 69 74 chr4 170963618 170964036 -31364311 + LTR68 LTR ERV1 5 420 -320 234 243 0 14 chr4 170964483 170964553 -31363794 + L1ME1 LINE L1 6097 6165 -1 22 0 0 0 chr4 170964771 170964793 -31363554 + AT_rich Low_complexity Low_complexity 1 22 0 2013 150 0 0 chr4 170965009 170965303 -31363044 + AluSg SINE Alu 1 294 -16 310 308 124 39 chr4 170965643 170965877 -31362470 - L1M4 LINE L1 -1145 5001 4748 250 361 26 19 chr4 170966153 170966308 -31362039 + MLT1J LTR MaLR 43 198 -313 2308 98 0 3 chr4 170966338 170966643 -31361704 - AluSc SINE Alu -3 306 3 21 0 0 0 chr4 170966646 170966667 -31361680 + AT_rich Low_complexity Low_complexity 1 21 0 2257 237 110 15 chr4 170968280 170969213 -31359134 - Charlie5 DNA MER1_type -984 1628 607 2327 279 61 41 chr4 170969328 170970292 -31358055 + L1M3d LINE L1 4 947 -5023 336 102 0 0 chr4 170970292 170970341 -31358006 + (CA)n Simple_repeat Simple_repeat 2 50 0 2327 279 61 41 chr4 170970341 170971419 -31356928 + L1M3d LINE L1 947 1847 -4123 261 57 0 0 chr4 170971419 170971454 -31356893 + (CA)n Simple_repeat Simple_repeat 2 36 0 2327 279 61 41 chr4 170971454 170972515 -31355832 + L1M3d LINE L1 1847 2885 -3085 1858 94 0 4 chr4 170972620 170972874 -31355473 - AluY SINE Alu -58 253 1 970 166 60 42 chr4 170972883 170972927 -31355420 - Tigger3(Golem) DNA MER2_type -459 2570 2528 1753 156 17 0 chr4 170972927 170973228 -31355119 - AluSq SINE Alu -2 311 6 970 166 60 42 chr4 170973228 170973467 -31354880 - Tigger3(Golem) DNA MER2_type -501 2528 2282 540 157 88 29 chr4 170973464 170973566 -31354781 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 486 290 57 16 chr4 170973566 170973812 -31354535 - Charlie5 DNA MER1_type -2335 277 22 2323 85 0 19 chr4 170974326 170974642 -31353705 + AluY SINE Alu 2 311 0 2414 151 8 0 chr4 170976245 170976635 -31351712 - Tigger1 DNA MER2_type -641 1777 1385 28099 28 6 1 chr4 170976635 170980808 -31347539 + L1PA3 LINE L1 1965 6155 0 8073 169 11 9 chr4 170980808 170982195 -31346152 - Tigger1 DNA MER2_type -1029 1389 1 258 353 52 0 chr4 170982861 170982977 -31345370 + L2 LINE L2 3192 3313 0 1618 216 24 3 chr4 170985434 170985768 -31342579 + L1MA4 LINE L1 1238 1578 -4987 * 11920 189 27 65 chr4 170985764 170986583 -31341764 + L1MA4 LINE L1 3152 4000 -3719 309 208 28 28 chr4 170986583 170986655 -31341692 + MSTA LTR MaLR 179 250 -178 11920 189 27 65 chr4 170986655 170987483 -31340864 + L1MA4 LINE L1 4000 4857 -2862 2140 141 120 5 chr4 170987483 170987867 -31340480 - MSTA LTR MaLR 0 428 1 11920 189 27 65 chr4 170987867 170989142 -31339205 + L1MA4 LINE L1 4857 6178 -1541 3021 151 71 35 chr4 170989142 170989733 -31338614 - LTR9 LTR ERV1 0 612 1 11920 189 27 65 chr4 170989733 170991488 -31336859 + L1MA4 LINE L1 6178 7719 0 6573 122 27 19 chr4 170992261 170993323 -31335024 - MER11C LTR ERVK 0 1071 1 1772 165 47 56 chr4 170993725 170994173 -31334174 + L1MC2 LINE L1 5896 6339 -5 21 0 0 0 chr4 170994624 170994645 -31333702 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr4 170994684 170994719 -31333628 + AT_rich Low_complexity Low_complexity 1 35 0 1771 129 144 0 chr4 170997334 170997660 -31330687 - THE1C LTR MaLR -2 373 1 9630 129 37 24 chr4 170997685 170999231 -31329116 - MSTB-int LTR MaLR -10 1570 5 1992 237 58 26 chr4 170999234 170999273 -31329074 - MLT2A2 LTR ERVL 0 554 518 4834 112 3 7 chr4 170999273 170999967 -31328380 + LTR8 LTR ERV1 1 691 0 414 0 0 0 chr4 170999972 171000018 -31328329 + (TA)n Simple_repeat Simple_repeat 2 47 0 1992 237 58 26 chr4 171000018 171000512 -31327835 - MLT2A2 LTR ERVL -39 515 1 408 246 152 35 chr4 171001658 171001829 -31326518 + MIR SINE MIR 5 195 -67 252 0 0 0 chr4 171001994 171002022 -31326325 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 960 120 0 0 chr4 171002021 171002171 -31326176 + (TA)n Simple_repeat Simple_repeat 1 150 0 511 239 75 0 chr4 171002258 171002392 -31325955 + MIR SINE MIR 86 229 -33 1780 168 150 11 chr4 171002452 171002826 -31325521 - MSTB LTR MaLR 0 426 1 27 29 0 0 chr4 171003428 171003462 -31324885 + AT_rich Low_complexity Low_complexity 1 34 0 193 304 5 14 chr4 171004213 171004313 -31324034 + MIR SINE MIR 45 143 -65 1722 140 4 0 chr4 171004315 171004572 -31323775 + AluSx SINE Alu 1 258 -54 211 150 25 0 chr4 171004607 171004647 -31323700 + A-rich Low_complexity Low_complexity 1 41 0 324 299 103 0 chr4 171004978 171005065 -31323282 + L2 LINE L2 3177 3272 0 239 221 18 88 chr4 171005369 171005489 -31322858 - L1ME3A LINE L1 -84 6078 5967 1127 255 75 53 chr4 171005549 171006025 -31322322 - L1ME3A LINE L1 -208 5962 5472 1127 136 11 0 chr4 171006025 171006201 -31322146 - AluSq SINE Alu -10 303 126 270 0 0 0 chr4 171006201 171006231 -31322116 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 1691 135 52 11 chr4 171006232 171006499 -31321848 - AluSx SINE Alu -28 284 7 2918 345 123 12 chr4 171006534 171008321 -31320026 + L2 LINE L2 209 2192 -1122 511 262 41 23 chr4 171008898 171009070 -31319277 + L2 LINE L2 2221 2395 -919 584 303 5 28 chr4 171009115 171009326 -31319021 + MER58A DNA MER1_type 19 224 0 6907 41 0 0 chr4 171009385 171010221 -31318126 - L1PA5 LINE L1 -1 6153 5318 307 272 12 3 chr4 171010472 171010603 -31317744 - L1MEd LINE L1 -5079 1461 1328 22 0 0 0 chr4 171010615 171010637 -31317710 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr4 171011820 171011845 -31316502 + (GA)n Simple_repeat Simple_repeat 1 25 0 296 338 156 34 chr4 171011964 171012349 -31315998 + L3b LINE CR1 1143 1574 -9 206 259 98 71 chr4 171012595 171012707 -31315640 + MIR SINE MIR 120 234 -28 354 221 0 0 chr4 171012946 171013071 -31315276 + CT-rich Low_complexity Low_complexity 1 125 0 181 277 62 15 chr4 171013092 171013157 -31315190 + MIR SINE MIR 65 132 -130 6122 164 41 14 chr4 171013160 171013669 -31314678 - Tigger3b DNA MER2_type -1797 1231 737 2179 111 3 3 chr4 171013669 171013975 -31314372 - AluSx SINE Alu -6 306 1 6122 164 41 14 chr4 171013975 171014664 -31313683 - Tigger3b DNA MER2_type -2291 737 1 215 326 12 0 chr4 171014667 171014753 -31313594 + MIR SINE MIR 175 261 -1 284 215 203 0 chr4 171014817 171014896 -31313451 + MIR SINE MIR 165 259 -3 38 61 0 0 chr4 171015202 171015268 -31313079 + AT_rich Low_complexity Low_complexity 1 66 0 1286 276 51 33 chr4 171015374 171015823 -31312524 + MER119 DNA MER1_type 6 462 -121 657 171 116 0 chr4 171015858 171015987 -31312360 - Tigger3(Golem) DNA MER2_type -2795 234 91 188 353 0 0 chr4 171017548 171017599 -31310748 + MIR SINE MIR 195 245 -17 25 0 0 0 chr4 171021603 171021628 -31306719 + AT_rich Low_complexity Low_complexity 1 25 0 1562 297 98 20 chr4 171021682 171022850 -31305497 - L1M4 LINE L1 -2018 4128 2870 474 266 69 18 chr4 171022868 171023086 -31305261 - L1M4 LINE L1 -3406 2740 2512 1729 239 45 26 chr4 171023536 171024064 -31304283 + L1ME2 LINE L1 5452 5989 -175 23 54 0 0 chr4 171024221 171024258 -31304089 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr4 171025343 171025381 -31302966 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr4 171025662 171025688 -31302659 + AT_rich Low_complexity Low_complexity 1 26 0 31 44 0 0 chr4 171025872 171025917 -31302430 + AT_rich Low_complexity Low_complexity 1 45 0 21 82 0 0 chr4 171026338 171026387 -31301960 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr4 171026472 171026501 -31301846 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 171027177 171027198 -31301149 + AT_rich Low_complexity Low_complexity 1 21 0 222 37 0 0 chr4 171027422 171027449 -31300898 + (TAA)n Simple_repeat Simple_repeat 2 28 0 180 111 0 0 chr4 171027588 171027615 -31300732 + (TAA)n Simple_repeat Simple_repeat 2 28 0 510 335 44 0 chr4 171027904 171028110 -31300237 + MIR SINE MIR 12 226 -36 606 54 11 21 chr4 171029147 171029240 -31299107 + L1PA8 LINE L1 6080 6171 -1 30 0 0 0 chr4 171030328 171030358 -31297989 + AT_rich Low_complexity Low_complexity 1 30 0 1198 290 16 3 chr4 171031754 171032075 -31296272 + MLT1H LTR MaLR 12 336 -213 274 208 68 64 chr4 171032228 171032397 -31295950 + MLT1E1 LTR MaLR 428 651 -3 18197 34 14 0 chr4 171032456 171035422 -31292925 + L1PA3 LINE L1 3174 6152 -3 207 0 0 0 chr4 171036523 171036546 -31291801 + (A)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr4 171036557 171036578 -31291769 + (GGAA)n Simple_repeat Simple_repeat 4 24 0 549 249 102 23 chr4 171037059 171037236 -31291111 + MIR SINE MIR 2 192 -70 5212 152 36 7 chr4 171037275 171037473 -31290874 + L1PB4 LINE L1 5068 5259 -897 2413 70 0 7 chr4 171037473 171037774 -31290573 + AluY SINE Alu 1 299 -12 5212 152 36 7 chr4 171037774 171038636 -31289711 + L1PB4 LINE L1 5259 6152 -4 27 29 0 0 chr4 171038700 171038734 -31289613 + AT_rich Low_complexity Low_complexity 1 34 0 504 314 57 43 chr4 171038778 171039128 -31289219 + L2 LINE L2 2956 3310 -3 2054 148 0 0 chr4 171039771 171040081 -31288266 - AluSx SINE Alu -2 310 1 311 270 94 31 chr4 171040171 171040330 -31288017 + L1MCc LINE L1 738 906 -5517 1966 114 4 0 chr4 171040619 171040890 -31287457 + AluSg SINE Alu 1 272 -38 230 264 0 95 chr4 171042155 171042303 -31286044 + MER94 DNA DNA 1 134 0 23 54 0 0 chr4 171043252 171043289 -31285058 + AT_rich Low_complexity Low_complexity 1 37 0 370 309 67 16 chr4 171043527 171043721 -31284626 + L1ME3 LINE L1 5893 6096 -66 341 253 135 66 chr4 171043782 171044301 -31284046 + L1M4 LINE L1 2944 3487 -2659 578 199 7 37 chr4 171044319 171044455 -31283892 - AluSq/x SINE Alu -179 134 3 525 299 58 8 chr4 171044457 171044718 -31283629 + L1M4 LINE L1 3474 3747 -2399 465 295 87 52 chr4 171045242 171045784 -31282563 + L1M4 LINE L1 4407 4967 -1179 23 33 0 0 chr4 171046013 171046043 -31282304 + AT_rich Low_complexity Low_complexity 1 30 0 1254 105 18 6 chr4 171046199 171046370 -31281977 + AluSx SINE Alu 1 173 -139 237 159 0 0 chr4 171046372 171046416 -31281931 + A-rich Low_complexity Low_complexity 1 44 0 1790 110 12 80 chr4 171046475 171046801 -31281546 - AluSc SINE Alu -5 304 1 21 0 0 0 chr4 171047298 171047319 -31281028 + AT_rich Low_complexity Low_complexity 1 21 0 303 337 52 26 chr4 171048863 171049056 -31279291 + L2 LINE L2 1504 1701 -1613 267 339 0 0 chr4 171049056 171049174 -31279173 + (CATATA)n Simple_repeat Simple_repeat 3 120 0 274 189 68 54 chr4 171049200 171049274 -31279073 - MLT1I LTR MaLR 0 409 335 1780 171 50 14 chr4 171050067 171050429 -31277918 - THE1C LTR MaLR 0 375 1 306 245 75 0 chr4 171050615 171050709 -31277638 - MIR SINE MIR -160 102 2 730 277 76 18 chr4 171050762 171051105 -31277242 - L1MCb LINE L1 -1488 5076 4714 1824 260 21 49 chr4 171051112 171051609 -31276738 - L1MCb LINE L1 -2185 4379 3869 2615 224 35 31 chr4 171051609 171052263 -31276084 - MER76 LTR ERV 0 688 29 267 114 0 0 chr4 171052263 171052307 -31276040 + (TTG)n Simple_repeat Simple_repeat 2 45 0 2615 224 35 31 chr4 171052307 171052335 -31276012 - MER76 LTR ERV -659 29 3 1824 260 21 49 chr4 171052335 171052391 -31275956 - L1MCb LINE L1 -2695 3869 3813 2238 98 0 10 chr4 171052391 171052697 -31275650 - AluSc SINE Alu -3 306 4 1824 260 21 49 chr4 171052697 171052915 -31275432 - L1MCb LINE L1 -2751 3813 3629 * 3425 255 124 42 chr4 171052912 171055705 -31272642 - L1MCb LINE L1 -3490 3074 45 1911 141 185 6 chr4 171055705 171056068 -31272279 + MSTA LTR MaLR 1 428 0 3425 255 124 42 chr4 171056068 171056117 -31272230 - L1MCb LINE L1 -6519 45 1 190 375 29 10 chr4 171056879 171056983 -31271364 - MIR SINE MIR -78 130 25 24 0 0 0 chr4 171057207 171057231 -31271116 + AT_rich Low_complexity Low_complexity 1 24 0 694 287 19 2 chr4 171057720 171058055 -31270292 + L1ME LINE L1 4799 5571 -595 269 225 176 14 chr4 171058126 171058268 -31270079 + L1MA10 LINE L1 6169 6333 -1 269 345 61 77 chr4 171058295 171058802 -31269545 - MLT1J LTR MaLR -10 501 3 325 299 49 21 chr4 171058958 171059102 -31269245 + L1MC4 LINE L1 6555 6702 -1340 230 56 28 0 chr4 171059102 171059138 -31269209 + (TA)n Simple_repeat Simple_repeat 1 37 0 369 0 0 0 chr4 171060128 171060169 -31268178 + (TG)n Simple_repeat Simple_repeat 2 42 0 1198 155 268 3 chr4 171060363 171060652 -31267695 - L1MA9 LINE L1 -3 6165 5814 6638 77 14 1 chr4 171060658 171062322 -31266025 - L1PA7 LINE L1 -6 6148 4472 741 50 0 10 chr4 171062322 171062418 -31265929 + L1P LINE L1 5316 5410 -721 * 24671 128 11 76 chr4 171062408 171067191 -31261156 - L1PA7 LINE L1 -1665 4481 12 2355 126 65 50 chr4 171067193 171067727 -31260620 - L1MA9 LINE L1 -336 5832 5294 503 265 36 18 chr4 171068077 171068243 -31260104 + MER104 DNA Tc2 6 174 -6 398 364 42 38 chr4 171068253 171068435 -31259912 + HAL1 LINE L1 1297 1482 -1025 2329 66 0 3 chr4 171068435 171068721 -31259626 + AluY SINE Alu 3 287 -24 398 364 42 38 chr4 171068721 171068851 -31259496 + HAL1 LINE L1 1482 1610 -897 1333 176 13 67 chr4 171070051 171070363 -31257984 - AluJo SINE Alu -17 295 1 21 36 0 0 chr4 171070827 171070855 -31257492 + AT_rich Low_complexity Low_complexity 1 28 0 24 91 0 0 chr4 171071419 171071485 -31256862 + AT_rich Low_complexity Low_complexity 1 66 0 374 78 94 0 chr4 171071844 171071908 -31256439 - L1PA13 LINE L1 -5 6158 6089 556 45 0 0 chr4 171071908 171071975 -31256372 + PABL_B LTR ERV1 1 67 -600 1881 131 28 7 chr4 171071988 171072279 -31256068 + AluSx SINE Alu 1 297 -15 2105 197 17 6 chr4 171073417 171073889 -31254458 - L1MA9 LINE L1 0 6312 5836 2465 210 37 9 chr4 171073897 171074692 -31253655 + L1MA9 LINE L1 5042 5829 -354 21 0 0 0 chr4 171075606 171075627 -31252720 + AT_rich Low_complexity Low_complexity 1 21 0 262 275 25 0 chr4 171075891 171075971 -31252376 + (TA)n Simple_repeat Simple_repeat 1 82 0 2096 96 23 0 chr4 171076052 171076355 -31251992 - AluSq SINE Alu -3 310 1 21 57 0 0 chr4 171076946 171076981 -31251366 + AT_rich Low_complexity Low_complexity 1 35 0 307 299 111 48 chr4 171077798 171078069 -31250278 - L1MEd LINE L1 -4910 1209 922 371 314 60 0 chr4 171078442 171078587 -31249760 - MIR SINE MIR -4 258 103 21 36 0 0 chr4 171080111 171080139 -31248208 + AT_rich Low_complexity Low_complexity 1 28 0 5508 116 67 0 chr4 171081073 171082103 -31246244 - L1PA13 LINE L1 -11 6152 5101 306 360 52 40 chr4 171082512 171082762 -31245585 - HERVL LTR ERVL -2032 3622 3370 24 0 0 0 chr4 171084424 171084448 -31243899 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 171084969 171084990 -31243357 + AT_rich Low_complexity Low_complexity 1 21 0 12213 211 38 20 chr4 171085318 171085578 -31242769 + L1M1 LINE L1 8 262 -6220 2016 131 0 10 chr4 171085578 171085875 -31242472 - AluSg SINE Alu -16 294 1 12213 211 38 20 chr4 171085875 171088923 -31239424 + L1M1 LINE L1 262 3479 -3003 2143 113 3 3 chr4 171088923 171089224 -31239123 - AluSg SINE Alu -9 301 1 12213 211 38 20 chr4 171089224 171091604 -31236743 + L1M1 LINE L1 3479 5816 -666 1002 158 48 0 chr4 171091605 171091770 -31236577 + MSTB LTR MaLR 252 424 -2 8286 202 24 3 chr4 171091776 171093389 -31234958 + MSTB-int LTR MaLR 5 1651 0 2394 149 26 21 chr4 171093389 171093813 -31234534 + MSTB LTR MaLR 1 426 0 216 254 0 0 chr4 171093922 171093977 -31234370 + CT-rich Low_complexity Low_complexity 2 56 0 351 290 8 34 chr4 171094462 171094678 -31233669 + CT-rich Low_complexity Low_complexity 1 210 0 1182 126 116 0 chr4 171095828 171096043 -31232304 + MSTA LTR MaLR 1 240 -188 240 171 0 71 chr4 171096105 171096175 -31232172 + GA-rich Low_complexity Low_complexity 3 67 0 14200 170 11 36 chr4 171096284 171098944 -31229403 + L1M1 LINE L1 13 2603 -4962 233 91 0 0 chr4 171099040 171099073 -31229274 - L1M1 LINE L1 -4448 3117 3085 1368 217 15 4 chr4 171099933 171100196 -31228151 + AluJb SINE Alu 1 266 -46 231 88 0 0 chr4 171100613 171100647 -31227700 + (TG)n Simple_repeat Simple_repeat 1 34 0 2397 46 0 0 chr4 171101156 171101440 -31226907 + AluY SINE Alu 1 325 0 286 98 0 0 chr4 171101440 171101481 -31226866 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 35 83 0 0 chr4 171102507 171102591 -31225756 + AT_rich Low_complexity Low_complexity 1 84 0 22 56 0 0 chr4 171102689 171102725 -31225622 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 171103072 171103094 -31225253 + AT_rich Low_complexity Low_complexity 1 22 0 1382 226 67 15 chr4 171103458 171103786 -31224561 - MER7A DNA MER2_type -3 343 1 3534 112 10 0 chr4 171104092 171104601 -31223746 - MER75 DNA T2_type 0 514 1 22 0 0 0 chr4 171104635 171104657 -31223690 + AT_rich Low_complexity Low_complexity 1 22 0 235 186 200 0 chr4 171104761 171104831 -31223516 + L1M4 LINE L1 5188 5271 -875 21 89 0 0 chr4 171104832 171104888 -31223459 + AT_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr4 171104899 171104923 -31223424 + AT_rich Low_complexity Low_complexity 1 24 0 23 78 0 0 chr4 171105536 171105587 -31222760 + AT_rich Low_complexity Low_complexity 1 51 0 262 299 58 26 chr4 171105658 171105812 -31222535 - L1ME2 LINE L1 -114 6050 5892 384 317 88 10 chr4 171105826 171106031 -31222316 - L1MEc LINE L1 -2912 3303 3083 1702 257 85 28 chr4 171106133 171107302 -31221045 - L1MEc LINE L1 -3180 3035 1769 34 24 0 0 chr4 171107506 171107547 -31220800 + AT_rich Low_complexity Low_complexity 1 41 0 38 85 0 0 chr4 171108025 171108119 -31220228 + AT_rich Low_complexity Low_complexity 1 94 0 22 0 0 0 chr4 171108165 171108187 -31220160 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 171108332 171108362 -31219985 + AT_rich Low_complexity Low_complexity 1 30 0 1744 169 7 0 chr4 171108824 171109114 -31219233 + AluSx SINE Alu 1 292 -20 28 29 0 0 chr4 171110108 171110143 -31218204 + AT_rich Low_complexity Low_complexity 1 35 0 199 331 152 25 chr4 171110830 171111153 -31217194 - L2 LINE L2 -55 3258 2895 292 288 0 14 chr4 171111476 171111549 -31216798 - MLT1J1 LTR MaLR -123 323 252 23 0 0 0 chr4 171111558 171111581 -31216766 + AT_rich Low_complexity Low_complexity 1 23 0 634 255 30 4 chr4 171111761 171111996 -31216351 + Charlie2a DNA MER1_type 767 1007 -1855 2505 113 31 0 chr4 171112050 171112403 -31215944 - THE1B LTR MaLR 0 364 1 1296 171 8 12 chr4 171112555 171112801 -31215546 - L1MA6 LINE L1 -412 5888 5644 425 176 0 0 chr4 171112801 171112869 -31215478 + Tigger2 DNA MER2_type 2 69 -2649 * 2399 168 34 9 chr4 171112853 171113294 -31215053 + Tigger2 DNA MER2_type 2267 2718 0 251 111 0 0 chr4 171113294 171113330 -31215017 - L1MA6 LINE L1 -655 5645 5610 1876 151 31 52 chr4 171113337 171113762 -31214585 + L1MA8 LINE L1 5874 6289 -2 247 234 39 39 chr4 171114153 171114230 -31214117 + MLT-int LTR MaLR 691 767 -968 * 270 239 0 14 chr4 171114218 171114289 -31214058 - MLT-int LTR MaLR -990 745 676 2713 210 70 32 chr4 171114348 171115107 -31213240 - MLT1A1-int LTR MaLR -487 884 5 893 194 40 25 chr4 171115111 171115312 -31213035 - MLT1A1 LTR MaLR 0 365 162 771 220 21 38 chr4 171115365 171115551 -31212796 - MLT1A1 LTR MaLR -188 186 4 4659 113 3 3 chr4 171115645 171116337 -31212010 + L1PA13 LINE L1 5464 6155 -8 557 265 89 14 chr4 171116371 171116662 -31211685 + L1MEc LINE L1 1629 1941 -4455 26 50 0 0 chr4 171116828 171116868 -31211479 + AT_rich Low_complexity Low_complexity 1 40 0 198 269 23 138 chr4 171118350 171118480 -31209867 - MER5A DNA MER1_type -74 115 1 346 274 120 72 chr4 171118979 171119766 -31208581 - L1ME LINE L1 -4609 1787 890 266 357 71 29 chr4 171120424 171120805 -31207542 - L1ME LINE L1 -5965 431 35 2025 142 3 3 chr4 171121440 171121751 -31206596 - AluSx SINE Alu -1 311 1 22 0 0 0 chr4 171121753 171121775 -31206572 + AT_rich Low_complexity Low_complexity 1 22 0 208 269 27 101 chr4 171124021 171124145 -31204202 + MIR SINE MIR 117 230 -32 1505 187 3 46 chr4 171124145 171124450 -31203897 + AluJb SINE Alu 1 292 -20 208 269 27 101 chr4 171124450 171124474 -31203873 + MIR SINE MIR 230 254 -8 2070 130 0 13 chr4 171124657 171124958 -31203389 - AluSg SINE Alu -13 297 1 408 306 28 21 chr4 171125037 171125181 -31203166 - L2 LINE L2 0 3313 3169 1331 161 35 0 chr4 171125185 171125415 -31202932 + THE1B LTR MaLR 1 238 -126 881 220 63 36 chr4 171125408 171125710 -31202637 + MLT2B3 LTR ERVL 236 544 -10 * 32 57 0 0 chr4 171125711 171125764 -31202583 + AT_rich Low_complexity Low_complexity 1 53 0 302 212 10 0 chr4 171125890 171125989 -31202358 + (CATA)n Simple_repeat Simple_repeat 4 103 0 215 0 0 62 chr4 171126317 171126349 -31201998 + (CAAAAA)n Simple_repeat Simple_repeat 4 33 0 1463 221 46 53 chr4 171127082 171127517 -31200830 - MER97c DNA MER1_type? -401 689 258 255 225 0 0 chr4 171127520 171127591 -31200756 + (CA)n Simple_repeat Simple_repeat 1 71 0 684 311 50 0 chr4 171127591 171127832 -31200515 - MER97a DNA MER1_type? -641 253 1 192 77 0 0 chr4 171129517 171129543 -31198804 + (A)n Simple_repeat Simple_repeat 1 26 0 1004 211 11 77 chr4 171130271 171130532 -31197815 + MER67D LTR ERV1 7 250 -264 374 75 282 0 chr4 171130529 171130617 -31197730 + MER67D LTR ERV1 389 458 -8 * 794 261 5 14 chr4 171131143 171131354 -31196993 - MER106A DNA MER1_type -2 234 26 2590 52 0 0 chr4 171131365 171131672 -31196675 - AluY SINE Alu -4 307 1 186 167 0 0 chr4 171132509 171132545 -31195802 + (TA)n Simple_repeat Simple_repeat 2 37 0 27 73 0 0 chr4 171132785 171132840 -31195507 + AT_rich Low_complexity Low_complexity 1 55 0 377 287 13 96 chr4 171132923 171133080 -31195267 + MIR SINE MIR 18 161 -101 266 181 39 3 chr4 171133084 171133144 -31195203 + L1ME2 LINE L1 5878 5938 -232 3693 160 49 8 chr4 171133171 171133907 -31194440 - L1MA4A LINE L1 -1 6302 5537 331 327 77 6 chr4 171133910 171134078 -31194269 + L1ME2 LINE L1 5925 6104 -60 299 345 25 0 chr4 171134900 171135019 -31193328 + MIR SINE MIR 48 169 -93 275 318 113 26 chr4 171136809 171137004 -31191343 + MIR SINE MIR 7 218 -44 300 226 75 21 chr4 171137042 171137135 -31191212 - MIR SINE MIR -74 188 91 318 321 55 18 chr4 171137341 171137506 -31190841 - MIR SINE MIR 0 262 92 531 53 40 0 chr4 171137752 171137827 -31190520 + MADE1 DNA Mariner 1 78 -2 34 42 0 0 chr4 171142524 171142572 -31185775 + AT_rich Low_complexity Low_complexity 1 48 0 1717 180 10 14 chr4 171143546 171143840 -31184507 - AluJb SINE Alu -17 295 3 23 33 0 0 chr4 171144087 171144117 -31184230 + AT_rich Low_complexity Low_complexity 1 30 0 2849 178 56 30 chr4 171144124 171144769 -31183578 - L1MA9 LINE L1 -38 6274 5613 211 311 76 30 chr4 171146884 171147016 -31181331 - MIR SINE MIR -9 253 116 1412 222 63 14 chr4 171147056 171147385 -31180962 + MLT2C1 LTR ERVL 3 353 -44 231 88 0 0 chr4 171147385 171147419 -31180928 + (CA)n Simple_repeat Simple_repeat 1 34 0 1412 222 63 14 chr4 171147419 171147454 -31180893 + MLT2C1 LTR ERVL 353 385 -12 1433 246 40 9 chr4 171147468 171147920 -31180427 + L1M4 LINE L1 4130 4595 -1551 3564 164 108 19 chr4 171148543 171149301 -31179046 - LTR1B LTR ERV1 0 826 1 2000 131 3 0 chr4 171149315 171149605 -31178742 + AluSg1 SINE Alu 1 291 -18 4720 95 3 10 chr4 171149870 171150542 -31177805 + PABL_B LTR ERV1 1 667 0 252 0 0 0 chr4 171150548 171150576 -31177771 + (T)n Simple_repeat Simple_repeat 1 28 0 241 266 171 38 chr4 171150760 171150918 -31177429 + LTR40b LTR ERVL 210 388 -74 336 94 0 0 chr4 171151046 171151099 -31177248 + (CA)n Simple_repeat Simple_repeat 2 54 0 31 96 0 0 chr4 171152515 171152609 -31175738 + AT_rich Low_complexity Low_complexity 1 94 0 524 303 78 63 chr4 171152909 171153308 -31175039 + MER92A LTR ERV1 4 408 -4 32 0 0 0 chr4 171154488 171154520 -31173827 + AT_rich Low_complexity Low_complexity 1 32 0 2041 179 23 45 chr4 171155920 171156071 -31172276 - L1MA7 LINE L1 -25 6266 6113 1810 170 0 0 chr4 171156071 171156377 -31171970 + AluSx SINE Alu 13 318 0 2041 179 23 45 chr4 171156377 171156709 -31171638 - L1MA7 LINE L1 -178 6113 5793 29 47 0 0 chr4 171156981 171157024 -31171323 + AT_rich Low_complexity Low_complexity 1 43 0 220 224 31 20 chr4 171157165 171157263 -31171084 + (TTATA)n Simple_repeat Simple_repeat 5 103 0 269 292 0 0 chr4 171157289 171157378 -31170969 - L1MC/D LINE L1 -1928 5880 5792 26 50 0 0 chr4 171157911 171157951 -31170396 + AT_rich Low_complexity Low_complexity 1 40 0 3851 275 35 40 chr4 171158648 171160310 -31168037 + L1M4 LINE L1 14 1668 -4874 6502 179 213 24 chr4 171160318 171161794 -31166553 - MER52A LTR ERV1 -1 1754 1 565 202 43 48 chr4 171161806 171161994 -31166353 + L1M4 LINE L1 1684 1870 -4776 1162 231 4 32 chr4 171161997 171162278 -31166069 + AluJo SINE Alu 1 273 -39 456 62 0 0 chr4 171162279 171162343 -31166004 + (GGAGA)n Simple_repeat Simple_repeat 5 68 0 249 33 0 0 chr4 171162736 171162766 -31165581 + (TG)n Simple_repeat Simple_repeat 1 30 0 26 30 0 0 chr4 171163592 171163625 -31164722 + AT_rich Low_complexity Low_complexity 1 33 0 29 47 0 0 chr4 171164181 171164224 -31164123 + AT_rich Low_complexity Low_complexity 1 43 0 1989 114 4 11 chr4 171164275 171164583 -31163764 - AluSc SINE Alu 0 306 1 250 215 27 31 chr4 171165477 171165557 -31162790 + MLT1I LTR MaLR 317 574 -16 328 368 84 0 chr4 171165608 171165690 -31162657 + MIR SINE MIR 27 101 -161 1922 130 10 3 chr4 171165690 171165989 -31162358 - AluSg SINE Alu -9 301 1 328 368 84 0 chr4 171165989 171166096 -31162251 + MIR SINE MIR 101 232 -30 243 0 0 0 chr4 171166251 171166278 -31162069 + (TG)n Simple_repeat Simple_repeat 2 28 0 1444 220 102 46 chr4 171166454 171166932 -31161415 - MLT1D LTR MaLR 0 505 1 194 91 30 0 chr4 171167156 171167189 -31161158 + (TTATA)n Simple_repeat Simple_repeat 5 38 0 2029 109 0 4 chr4 171170797 171171073 -31157274 + AluSq SINE Alu 9 283 -30 573 349 78 0 chr4 171171960 171172215 -31156132 + MLT1J1 LTR MaLR 2 276 -170 284 316 68 17 chr4 171172504 171172621 -31155726 - L2 LINE L2 0 3272 3150 2217 272 99 58 chr4 171172638 171172856 -31155491 + Tigger3b DNA MER2_type 1 209 -2819 2121 100 0 36 chr4 171172856 171173157 -31155190 + AluSq SINE Alu 1 290 -23 2217 272 99 58 chr4 171173157 171173555 -31154792 + Tigger3b DNA MER2_type 209 652 -2376 7547 27 0 0 chr4 171173555 171174600 -31153747 - L1PA4 LINE L1 -3 6152 5106 2217 272 99 58 chr4 171174600 171174691 -31153656 + Tigger3b DNA MER2_type 652 738 -493 2223 161 39 18 chr4 171174806 171175187 -31153160 + MER1A DNA MER1_type 1 389 -140 1917 175 31 31 chr4 171175187 171175542 -31152805 - THE1B LTR MaLR 0 364 10 701 168 17 0 chr4 171175543 171175662 -31152685 + MER1A DNA MER1_type 391 511 -22 3050 178 56 5 chr4 171175664 171176219 -31152128 + MER70-int LTR ERVL 609 1191 -3832 2622 189 10 19 chr4 171176219 171176700 -31151647 + MER70-int LTR ERVL 1621 2097 -2926 982 243 14 9 chr4 171176703 171176925 -31151422 + MER70A LTR ERVL 250 472 0 1397 206 101 17 chr4 171176940 171177285 -31151062 + MLT1A2 LTR MaLR 1 374 0 1197 256 31 22 chr4 171178191 171178550 -31149797 + MLT1A1 LTR MaLR 4 365 0 202 229 0 0 chr4 171180120 171180168 -31148179 + T-rich Low_complexity Low_complexity 2 49 0 439 214 20 0 chr4 171180563 171180661 -31147686 - MSTD LTR MaLR -2 394 295 2817 165 50 38 chr4 171180761 171180788 -31147559 + L1MC1 LINE L1 1012 1037 -5389 2829 16 0 0 chr4 171180788 171181106 -31147241 + AluYb8 SINE Alu 1 318 0 2817 165 50 38 chr4 171181106 171181775 -31146572 + L1MC1 LINE L1 1037 1805 -4621 617 143 27 0 chr4 171181774 171181886 -31146461 + L1MC1 LINE L1 2111 2225 -4201 * 948 182 21 11 chr4 171181889 171182076 -31146271 + AluJo SINE Alu 122 310 -2 824 174 13 94 chr4 171182077 171182270 -31146077 + L1MC1 LINE L1 2246 2409 -4017 1665 177 3 25 chr4 171182270 171182586 -31145761 - AluJb SINE Alu -3 309 1 824 174 13 94 chr4 171182586 171182691 -31145656 + L1MC1 LINE L1 2409 2521 -3905 524 103 9 5 chr4 171182696 171182819 -31145528 + MER50 LTR ERV1 4 186 -548 1622 161 10 38 chr4 171182822 171183113 -31145234 + AluSg SINE Alu 4 286 -24 25 0 0 0 chr4 171183113 171183138 -31145209 + AT_rich Low_complexity Low_complexity 1 25 0 351 135 14 14 chr4 171183138 171183212 -31145135 - Tigger3(Golem) DNA MER2_type -2705 324 251 4393 184 36 55 chr4 171183213 171184303 -31144044 + MER11C LTR ERVK 3 1071 0 238 274 133 9 chr4 171184330 171184443 -31143904 - L1ME LINE L1 -410 5752 5626 2243 93 3 3 chr4 171184495 171184796 -31143551 + AluY SINE Alu 3 303 -8 240 339 55 12 chr4 171184856 171185110 -31143237 - L1ME LINE L1 -840 5519 5255 4299 161 50 27 chr4 171185276 171185993 -31142354 - L1MC1 LINE L1 -18 6315 5573 2241 87 0 3 chr4 171185993 171186282 -31142065 + AluY SINE Alu 11 298 -13 4299 161 50 27 chr4 171186282 171186452 -31141895 - L1MC1 LINE L1 -760 5573 5408 28 61 0 0 chr4 171186495 171186544 -31141803 + AT_rich Low_complexity Low_complexity 1 49 0 1909 133 0 14 chr4 171186544 171186838 -31141509 + AluSg SINE Alu 21 310 0 3055 181 9 11 chr4 171186843 171187384 -31140963 + MER50 LTR ERV1 171 710 -24 2687 274 82 9 chr4 171187389 171187517 -31140830 + L1MC1 LINE L1 2522 2639 -3787 231 36 0 0 chr4 171187517 171187545 -31140802 + (TA)n Simple_repeat Simple_repeat 2 29 0 2687 274 82 9 chr4 171187545 171188578 -31139769 + L1MC1 LINE L1 2639 3767 -2659 * 5020 204 53 21 chr4 171188562 171190038 -31138309 + L1MC1 LINE L1 5079 6595 -18 362 335 94 31 chr4 171190205 171190829 -31137518 + L1ME3 LINE L1 5257 5921 -243 618 304 66 4 chr4 171191114 171191341 -31137006 + MIR SINE MIR 22 262 0 2105 120 3 7 chr4 171191492 171191793 -31136554 + AluSp SINE Alu 1 300 -13 298 306 169 41 chr4 171191865 171192280 -31136067 + L2 LINE L2 2843 3310 -3 10960 99 13 14 chr4 171192780 171194340 -31134007 + THE1B-int LTR MaLR 22 1580 0 2220 106 50 36 chr4 171194340 171194699 -31133648 + THE1B LTR MaLR 1 364 0 810 146 49 7 chr4 171194699 171194843 -31133504 + LTR29 LTR ERV1 162 311 -311 1259 163 53 53 chr4 171195054 171195388 -31132959 - THE1C LTR MaLR 0 355 1 * 1296 171 4 16 chr4 171195388 171195638 -31132709 + LTR29 LTR ERV1 310 556 -66 184 266 43 43 chr4 171195786 171195880 -31132467 + MIR SINE MIR 36 129 -133 1387 160 70 49 chr4 171197484 171197771 -31130576 + AluJo SINE Alu 1 293 -19 276 30 0 0 chr4 171197868 171197901 -31130446 + (TG)n Simple_repeat Simple_repeat 2 34 0 1120 188 90 127 chr4 171197905 171198384 -31129963 - MER4C LTR ERV1 0 465 5 225 277 18 27 chr4 171198388 171198500 -31129847 + (CATATA)n Simple_repeat Simple_repeat 2 112 0 21 57 0 0 chr4 171199573 171199608 -31128739 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr4 171200384 171200409 -31127938 + AT_rich Low_complexity Low_complexity 1 25 0 2814 170 10 61 chr4 171201253 171201858 -31126489 - MER4B LTR ERV1 -36 574 1 330 345 85 19 chr4 171202725 171202983 -31125364 + LTR16C LTR ERVL 206 480 -11 293 308 30 19 chr4 171203246 171203402 -31124945 + MLT1J2 LTR MaLR 51 194 -256 186 43 0 0 chr4 171203602 171203625 -31124722 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 759 161 123 0 chr4 171203627 171203757 -31124590 - AluSg/x SINE Alu -30 280 135 3632 129 43 0 chr4 171203757 171204314 -31124033 + L1P3 LINE L1 53 633 -5828 6852 61 14 2 chr4 171204314 171205414 -31122933 + L1PA8 LINE L1 5055 6164 -8 29 28 0 0 chr4 171206218 171206254 -31122093 + AT_rich Low_complexity Low_complexity 1 36 0 211 351 75 37 chr4 171206299 171206433 -31121914 + MIR3 SINE MIR 44 182 -26 202 305 127 59 chr4 171206433 171206551 -31121796 - L2 LINE L2 -19 3294 3169 22 0 0 0 chr4 171207461 171207483 -31120864 + AT_rich Low_complexity Low_complexity 1 22 0 274 274 45 6 chr4 171207688 171207845 -31120502 + (TA)n Simple_repeat Simple_repeat 1 163 0 2217 125 0 0 chr4 171207899 171208203 -31120144 + AluSq SINE Alu 1 304 -9 25 51 0 0 chr4 171208219 171208258 -31120089 + AT_rich Low_complexity Low_complexity 1 39 0 2075 117 0 3 chr4 171209141 171209439 -31118908 + AluSg SINE Alu 1 297 -13 3978 181 34 10 chr4 171209469 171209754 -31118593 - L1MA9 LINE L1 -24 6288 6004 1213 271 131 15 chr4 171209754 171210403 -31117944 - L1MD3 LINE L1 -1990 6800 6077 2232 137 11 0 chr4 171210508 171210872 -31117475 - L1MA9 LINE L1 -1157 4989 4622 1031 47 8 0 chr4 171211056 171211183 -31117164 - AluY SINE Alu -14 297 170 801 244 48 106 chr4 171211186 171211499 -31116848 - L1MD3 LINE L1 -4345 2777 2508 2115 124 0 3 chr4 171211499 171211798 -31116549 - AluSp SINE Alu -14 299 2 801 244 48 106 chr4 171211798 171212029 -31116318 - L1MD3 LINE L1 -4614 2508 2265 1446 145 20 0 chr4 171212044 171212292 -31116055 - L1PA13 LINE L1 -3 6160 5908 1638 170 4 46 chr4 171212294 171212580 -31115767 - L1PA13 LINE L1 -375 5780 5550 2348 76 0 0 chr4 171212580 171212870 -31115477 - AluY SINE Alu -21 290 1 1638 170 4 46 chr4 171212870 171213076 -31115271 - L1PA13 LINE L1 -605 5550 5337 306 306 0 10 chr4 171213076 171213174 -31115173 - L1MD3 LINE L1 -4766 2175 2079 1666 288 46 50 chr4 171213318 171214405 -31113942 - L1MD3 LINE L1 -4890 1533 814 370 278 166 0 chr4 171214623 171214774 -31113573 - L1MD3 LINE L1 -5911 512 337 5486 184 35 3 chr4 171214807 171215831 -31112516 - L1 LINE L1 -1412 4734 3668 261 0 0 0 chr4 171215831 171215860 -31112487 + (TG)n Simple_repeat Simple_repeat 2 30 0 5486 184 35 3 chr4 171215860 171215976 -31112371 - L1 LINE L1 -2478 3668 3557 2215 184 80 13 chr4 171215974 171216827 -31111520 + L1M2 LINE L1 4728 5644 -647 * 408 234 12 72 chr4 171216861 171217028 -31111319 - L1MD3 LINE L1 -6249 174 18 1143 128 112 6 chr4 171217078 171217257 -31111090 + AluSg SINE Alu 1 198 -112 369 297 210 0 chr4 171217698 171217836 -31110511 + MER5A DNA MER1_type 12 178 -11 1885 144 18 0 chr4 171218265 171218565 -31109782 + AluSx SINE Alu 1 305 0 266 122 0 20 chr4 171218920 171218969 -31109378 + (CA)n Simple_repeat Simple_repeat 2 49 0 228 384 73 0 chr4 171219132 171219309 -31109038 + L1MEd LINE L1 467 656 -5463 1881 277 65 13 chr4 171219396 171220557 -31107790 + L1ME1 LINE L1 4871 6097 -65 180 394 40 11 chr4 171221412 171221587 -31106760 + L2 LINE L2 2348 2527 -787 23 33 0 0 chr4 171221679 171221709 -31106638 + AT_rich Low_complexity Low_complexity 1 30 0 253 300 78 0 chr4 171222096 171222186 -31106161 - MER69 DNA AcHobo -2382 144 48 617 259 86 16 chr4 171222253 171222496 -31105851 + MIR SINE MIR 2 261 -1 300 292 41 31 chr4 171222505 171222700 -31105647 + HAL1 LINE L1 1578 1774 -733 425 312 71 51 chr4 171223248 171223543 -31104804 + HAL1 LINE L1 2204 2504 -3 27 0 0 0 chr4 171223740 171223767 -31104580 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr4 171223872 171223900 -31104447 + AT_rich Low_complexity Low_complexity 1 28 0 1345 156 75 99 chr4 171226332 171226716 -31101631 - THE1C LTR MaLR 0 375 1 8581 153 12 44 chr4 171226716 171228347 -31100000 - THE1C-int LTR MaLR 0 1580 3 1597 162 59 48 chr4 171228349 171228720 -31099627 - THE1C LTR MaLR 0 375 1 25 51 0 0 chr4 171229234 171229273 -31099074 + AT_rich Low_complexity Low_complexity 1 39 0 2210 95 3 0 chr4 171229838 171230123 -31098224 + AluSc SINE Alu 1 286 -23 4829 195 27 25 chr4 171230621 171231717 -31096630 + L1MC3 LINE L1 6667 7764 -21 2448 194 49 36 chr4 171232176 171232785 -31095562 - L1MC2 LINE L1 -9 6335 5719 1322 280 81 8 chr4 171233239 171233732 -31094615 + L1ME LINE L1 29 557 -5513 966 301 28 25 chr4 171233897 171234252 -31094095 - MER69 DNA AcHobo -1456 1070 715 357 189 0 0 chr4 171234283 171234373 -31093974 + (TCCA)n Simple_repeat Simple_repeat 3 92 0 1036 308 98 52 chr4 171234390 171235011 -31093336 - MER69 DNA AcHobo -1859 667 18 27 62 0 0 chr4 171236756 171236804 -31091543 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr4 171238389 171238417 -31089930 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 171238487 171238511 -31089836 + AT_rich Low_complexity Low_complexity 1 24 0 1267 238 20 32 chr4 171240050 171240448 -31087899 - MLT1A1 LTR MaLR -4 361 1 1266 250 57 6 chr4 171241045 171241521 -31086826 + L1ME LINE L1 2109 2608 -3472 2461 180 67 10 chr4 171241561 171242127 -31086220 - LTR9B LTR ERV1 0 644 7 1102 233 18 24 chr4 171242127 171242422 -31085925 - HUERS-P3 LTR ERV1 0 8918 7169 626 243 11 16 chr4 171242716 171242917 -31085430 - HUERS-P3b LTR ERV1 -2453 2562 2383 426 246 0 53 chr4 171242908 171243022 -31085325 - HUERS-P3b LTR ERV1 -466 6952 6845 * 3402 178 26 11 chr4 171243031 171243732 -31084615 - HUERS-P3b LTR ERV1 -2007 6912 6162 * 3941 151 38 5 chr4 171243717 171244372 -31083975 - HUERS-P3b LTR ERV1 -3342 5577 4901 809 218 0 0 chr4 171244375 171244517 -31083830 - HUERS-P3b LTR ERV1 -4239 4680 4539 7275 179 18 36 chr4 171244524 171246744 -31081603 - HUERS-P3b LTR ERV1 -5314 2104 764 823 232 38 49 chr4 171246722 171246985 -31081362 - HUERS-P3b LTR ERV1 -6760 658 399 * 2522 187 65 2 chr4 171247066 171247574 -31080773 - LTR9B LTR ERV1 0 644 105 319 229 26 113 chr4 171247639 171247870 -31080477 + L1M4 LINE L1 4391 4601 -1545 201 179 18 36 chr4 171249162 171249218 -31079129 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 24 32 0 0 chr4 171249226 171249257 -31079090 + AT_rich Low_complexity Low_complexity 1 31 0 206 61 0 30 chr4 171249371 171249404 -31078943 + (GA)n Simple_repeat Simple_repeat 1 32 0 21 95 0 0 chr4 171249761 171249824 -31078523 + AT_rich Low_complexity Low_complexity 1 63 0 629 327 87 23 chr4 171249887 171250450 -31077897 + L2 LINE L2 2670 3269 -44 691 217 257 6 chr4 171251138 171251484 -31076863 - Charlie4a DNA MER1_type -35 473 41 418 366 18 4 chr4 171251584 171251811 -31076536 - L1MEd LINE L1 -3717 2412 2183 712 291 96 43 chr4 171252483 171253287 -31075060 - L1MEd LINE L1 -4846 1285 560 187 344 21 0 chr4 171253754 171253847 -31074500 + MIR SINE MIR 74 168 -94 27 62 0 0 chr4 171254386 171254434 -31073913 + AT_rich Low_complexity Low_complexity 1 48 0 310 320 55 0 chr4 171254878 171255006 -31073341 - MIR SINE MIR -72 190 56 199 395 0 0 chr4 171255244 171255320 -31073027 + MIR SINE MIR 38 113 -95 1316 134 4 71 chr4 171255824 171255882 -31072465 - MER4B LTR ERV1 0 610 550 2470 80 0 3 chr4 171255882 171256194 -31072153 + AluY SINE Alu 1 311 0 1316 134 4 71 chr4 171256194 171256374 -31071973 - MER4B LTR ERV1 -60 550 388 533 148 7 37 chr4 171256379 171256528 -31071819 - MER4A LTR ERV1 -201 463 261 560 125 31 10 chr4 171256528 171256624 -31071723 - MER4A LTR ERV1 -566 98 1 6205 129 50 63 chr4 171256651 171257315 -31071032 - THE1B-int LTR MaLR -430 1150 507 2126 128 3 3 chr4 171257315 171257627 -31070720 - AluSx SINE Alu 0 312 1 6205 129 50 63 chr4 171257627 171258128 -31070219 - THE1B-int LTR MaLR -1073 507 1 2387 124 8 3 chr4 171258128 171258490 -31069857 - THE1B LTR MaLR 0 364 1 1536 133 11 28 chr4 171258499 171258785 -31069562 + L1MA4A LINE L1 6015 6295 -8 21 36 0 0 chr4 171260953 171260981 -31067366 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr4 171262074 171262106 -31066241 + AT_rich Low_complexity Low_complexity 1 32 0 368 175 0 0 chr4 171262447 171262510 -31065837 + Alu SINE Alu 240 302 0 1007 265 130 8 chr4 171263270 171263786 -31064561 - MLT2E LTR ERVL -4 624 8 2330 81 10 7 chr4 171264273 171264582 -31063765 - AluSx SINE Alu -2 310 1 2141 116 0 31 chr4 171266282 171266602 -31061745 + AluSg SINE Alu 1 310 0 4131 111 113 120 chr4 171266870 171268275 -31060072 + pTR5 LTR ERV1 743 2438 0 259 156 44 0 chr4 171269283 171269328 -31059019 + MER66A LTR ERV1 290 336 -142 309 351 61 20 chr4 171269965 171270113 -31058234 + MIR3 SINE MIR 55 208 0 198 244 0 0 chr4 171270753 171270794 -31057553 + MER5B DNA MER1_type 17 57 -121 25 0 0 0 chr4 171272222 171272247 -31056100 + AT_rich Low_complexity Low_complexity 1 25 0 1306 304 46 38 chr4 171322380 171323081 -31005266 + L1M4c LINE L1 754 1465 -4919 1896 150 3 7 chr4 171323081 171323375 -31004972 - AluSx SINE Alu -19 293 1 1306 304 46 38 chr4 171323375 171323636 -31004711 + L1M4c LINE L1 1465 1723 -4661 1875 193 19 56 chr4 171323739 171323961 -31004386 - L1MD2 LINE L1 -470 5889 5660 1962 126 0 7 chr4 171323961 171324269 -31004078 + AluSg SINE Alu 1 306 0 1875 193 19 56 chr4 171324269 171324527 -31003820 - L1MD2 LINE L1 -699 5660 5426 1254 208 8 23 chr4 171324531 171324796 -31003551 - AluJo SINE Alu -4 308 48 3281 271 108 20 chr4 171324796 171326241 -31002106 - L1MD2 LINE L1 -803 5343 3729 192 97 0 0 chr4 171326241 171326272 -31002075 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3281 271 108 20 chr4 171326272 171326504 -31001843 - L1MD2 LINE L1 -2417 3729 3519 1837 136 7 10 chr4 171326550 171326851 -31001496 - L1PA13 LINE L1 0 6163 5864 804 102 0 80 chr4 171326853 171326892 -31001455 + L1P LINE L1 3705 3746 -2400 2136 104 7 0 chr4 171326892 171327179 -31001168 + AluSg SINE Alu 1 289 -21 804 102 0 80 chr4 171327179 171327276 -31001071 + L1P LINE L1 3746 3830 -2316 863 196 5 37 chr4 171327293 171327482 -31000865 + AluJb SINE Alu 129 311 -1 678 281 0 0 chr4 171327529 171327707 -31000640 - L1M4 LINE L1 -1984 4162 3985 4471 264 52 24 chr4 171327969 171329763 -30998584 - L1M4c LINE L1 -4162 2795 450 359 339 29 29 chr4 171329764 171329957 -30998390 - ERVL LTR ERVL -2232 3422 3247 756 320 56 66 chr4 171331224 171331739 -30996608 - L2 LINE L2 0 3313 2804 1660 120 3 91 chr4 171331750 171332088 -30996259 - AluSx SINE Alu 0 311 1 441 307 6 68 chr4 171332117 171332293 -30996054 + L1M4c LINE L1 556 720 -6139 434 164 0 0 chr4 171332576 171332643 -30995704 + LTR40a LTR ERVL 448 514 -5 3402 187 32 35 chr4 171332863 171333547 -30994800 + MER54B LTR ERVL 1 682 -111 2038 125 10 0 chr4 171333636 171333931 -30994416 - AluSx SINE Alu -14 298 1 241 222 111 0 chr4 171334941 171335022 -30993325 - L1MC4 LINE L1 -1339 6703 6614 26 30 0 0 chr4 171335509 171335542 -30992805 + AT_rich Low_complexity Low_complexity 1 33 0 1004 229 100 29 chr4 171337300 171337579 -30990768 - MSTD LTR MaLR -96 300 2 223 367 0 0 chr4 171338198 171338277 -30990070 + L2 LINE L2 3224 3302 -11 25 31 0 0 chr4 171339764 171339796 -30988551 + AT_rich Low_complexity Low_complexity 1 32 0 2107 202 70 11 chr4 171339805 171340009 -30988338 + MER70B LTR ERVL 1 192 -386 2341 129 45 42 chr4 171340009 171340436 -30987911 + MSTA LTR MaLR 1 428 0 2107 202 70 11 chr4 171340436 171340672 -30987675 + MER70B LTR ERVL 192 467 -111 314 354 46 8 chr4 171341093 171341223 -30987124 + MIR3 SINE MIR 10 144 -64 362 258 66 26 chr4 171341371 171341522 -30986825 + ERVL LTR ERVL 3888 4044 -1720 380 326 115 37 chr4 171341573 171342008 -30986339 + ERVL LTR ERVL 4111 4579 -1075 260 238 36 48 chr4 171342591 171342675 -30985672 + LTR40a LTR ERVL 115 197 -322 728 284 89 14 chr4 171343213 171343702 -30984645 + L1M4c LINE L1 2662 3223 -3884 1216 256 106 13 chr4 171344017 171344404 -30983943 - L1MCc LINE L1 -5920 503 81 306 0 0 0 chr4 171345166 171345200 -30983147 + (CA)n Simple_repeat Simple_repeat 2 35 0 2241 98 0 3 chr4 171345574 171345870 -30982477 - AluSc SINE Alu -14 295 1 2217 102 10 0 chr4 171347852 171348157 -30980190 + AluSc SINE Alu 1 308 -1 27 62 0 0 chr4 171352569 171352617 -30975730 + AT_rich Low_complexity Low_complexity 1 48 0 201 224 184 61 chr4 171352867 171352965 -30975382 - L2 LINE L2 -15 3298 3189 21 0 0 0 chr4 171353845 171353866 -30974481 + AT_rich Low_complexity Low_complexity 1 21 0 316 309 194 0 chr4 171354568 171354707 -30973640 + MIR SINE MIR 84 249 -13 1599 191 10 0 chr4 171356714 171357002 -30971345 - AluJo SINE Alu -19 293 3 1981 153 0 0 chr4 171357361 171357661 -30970686 + AluSx SINE Alu 1 300 -12 284 306 168 21 chr4 171358063 171358478 -30969869 - LTR33 LTR ERVL 0 521 10 1925 136 0 4 chr4 171358754 171359054 -30969293 - AluSg SINE Alu 0 299 1 445 310 122 46 chr4 171359695 171360286 -30968061 + L1M4 LINE L1 4212 4847 -1299 315 238 12 24 chr4 171360397 171360481 -30967866 + MLT1F LTR MaLR 21 103 -439 1032 274 88 58 chr4 171361431 171361945 -30966402 - L1M4 LINE L1 -5973 569 41 1619 186 29 0 chr4 171361950 171362257 -30966090 + AluJb SINE Alu 2 316 0 745 143 45 8 chr4 171362259 171362392 -30965955 - LTR23 LTR ERV1 -53 384 247 186 71 0 0 chr4 171362528 171362556 -30965791 + (TA)n Simple_repeat Simple_repeat 2 29 0 474 204 27 0 chr4 171362563 171362676 -30965671 - HUERS-P1 LTR ERV1 -3939 2096 1895 1995 138 47 76 chr4 171363513 171363583 -30964764 - LTR23 LTR ERV1 0 437 366 2180 121 0 0 chr4 171363583 171363890 -30964457 - AluSg SINE Alu -1 309 3 1995 138 47 76 chr4 171363890 171364267 -30964080 - LTR23 LTR ERV1 -71 366 3 2045 182 41 7 chr4 171364713 171365125 -30963222 + MSTB LTR MaLR 1 426 0 2828 176 76 3 chr4 171365190 171365782 -30962565 - LTR24C LTR ERV1 0 635 1 2020 115 0 0 chr4 171365908 171366207 -30962140 + AluSc SINE Alu 1 299 0 21 0 0 0 chr4 171366376 171366397 -30961950 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 171366640 171366661 -30961686 + AT_rich Low_complexity Low_complexity 1 21 0 307 344 49 18 chr4 171367039 171367202 -30961145 - MIR SINE MIR -3 259 92 617 265 119 41 chr4 171367210 171367801 -30960546 + LTR50 LTR ERVL 8 793 -2 1174 75 0 32 chr4 171367824 171368010 -30960337 + (TTATG)n Simple_repeat Simple_repeat 1 180 0 601 216 67 0 chr4 171368014 171368148 -30960199 - FRAM SINE Alu -25 151 9 688 289 16 5 chr4 171369259 171369446 -30958901 + MIR SINE MIR 63 251 -11 23 0 0 0 chr4 171369450 171369473 -30958874 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr4 171371617 171371663 -30956684 + AT_rich Low_complexity Low_complexity 1 46 0 192 111 0 0 chr4 171372052 171372088 -30956259 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 5793 158 8 61 chr4 171373084 171374952 -30953395 - L1PA14 LINE L1 0 7599 5850 1449 157 4 0 chr4 171374949 171375191 -30953156 - L1PA14 LINE L1 -7334 247 5 * 2075 117 0 0 chr4 171375271 171375561 -30952786 + AluSg SINE Alu 2 291 -19 306 0 0 0 chr4 171375988 171376022 -30952325 + (TG)n Simple_repeat Simple_repeat 2 35 0 2184 116 0 0 chr4 171377198 171377500 -30950847 + AluSg SINE Alu 1 302 -8 26 50 0 0 chr4 171377691 171377731 -30950616 + AT_rich Low_complexity Low_complexity 1 40 0 1491 312 187 30 chr4 171377785 171379045 -30949302 + L2 LINE L2 1347 2804 -510 759 307 26 71 chr4 171379051 171379475 -30948872 + MLT1A2 LTR MaLR 1 392 -4 230 316 86 74 chr4 171379481 171379807 -30948540 + L2 LINE L2 2818 3147 -166 2408 142 3 3 chr4 171381036 171381409 -30946938 - THE1C LTR MaLR -2 373 1 250 255 10 69 chr4 171381800 171381902 -30946445 + MIR SINE MIR 121 216 -46 1125 129 0 0 chr4 171382300 171382471 -30945876 - L1MA3 LINE L1 -351 5954 5784 2053 130 32 11 chr4 171382471 171382806 -30945541 + L1MA3 LINE L1 5949 6302 -3 2279 127 111 5 chr4 171383160 171383547 -30944800 + MSTA LTR MaLR 1 428 0 601 286 70 26 chr4 171384930 171385157 -30943190 + MIR SINE MIR 1 237 -25 1113 215 159 51 chr4 171385162 171385614 -30942733 - MLT1D LTR MaLR -3 502 2 437 322 84 17 chr4 171386263 171386502 -30941845 - LTR33 LTR ERVL -74 447 193 1001 243 33 12 chr4 171387546 171387789 -30940558 + MIR SINE MIR 15 262 0 691 188 15 15 chr4 171388626 171388759 -30939588 + FLAM_C SINE Alu 1 133 0 302 252 56 140 chr4 171389395 171389538 -30938809 + L2 LINE L2 3182 3312 -1 599 258 55 16 chr4 171390719 171390901 -30937446 - MER3 DNA MER1_type -2 207 19 1854 224 29 24 chr4 171391172 171391628 -30936719 - MLT1C LTR MaLR -4 463 6 218 237 13 0 chr4 171391661 171391737 -30936610 + (TA)n Simple_repeat Simple_repeat 2 78 0 1907 162 0 0 chr4 171391868 171392171 -30936176 + AluSx SINE Alu 4 306 -6 683 269 20 37 chr4 171392232 171392477 -30935870 - L1MD2 LINE L1 -12 6347 6107 22 0 0 0 chr4 171394112 171394134 -30934213 + AT_rich Low_complexity Low_complexity 1 22 0 1533 190 14 0 chr4 171394369 171394653 -30933694 + AluJb SINE Alu 1 288 -24 2145 121 0 0 chr4 171395771 171396069 -30932278 - AluSx SINE Alu -14 298 1 27 0 0 0 chr4 171397147 171397174 -30931173 + AT_rich Low_complexity Low_complexity 1 27 0 2350 76 0 7 chr4 171397219 171397521 -30930826 + AluY SINE Alu 1 300 -11 30 27 0 0 chr4 171400937 171400974 -30927373 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 171402297 171402332 -30926015 + AT_rich Low_complexity Low_complexity 1 35 0 371 288 104 0 chr4 171403247 171403372 -30924975 - MIR SINE MIR 0 262 125 23 68 0 0 chr4 171404252 171404296 -30924051 + AT_rich Low_complexity Low_complexity 1 44 0 22 70 0 0 chr4 171404753 171404796 -30923551 + AT_rich Low_complexity Low_complexity 1 43 0 202 356 14 14 chr4 171404814 171404887 -30923460 + MIR SINE MIR 30 102 -160 484 312 62 54 chr4 171405031 171405419 -30922928 + MLT1K LTR MaLR 186 576 -12 876 217 46 68 chr4 171405991 171406320 -30922027 - MER93b LTR ERV1 -2 371 74 1224 82 5 52 chr4 171407753 171407947 -30920400 - MER30B DNA MER1_type 0 190 6 310 308 96 50 chr4 171408706 171408904 -30919443 - MIR SINE MIR -55 207 1 2447 37 3 3 chr4 171410679 171410977 -30917370 - AluY SINE Alu -13 298 1 188 414 98 15 chr4 171411224 171411357 -30916990 + L2 LINE L2 3125 3268 -4 25 31 0 0 chr4 171412322 171412354 -30915993 + AT_rich Low_complexity Low_complexity 1 32 0 20840 162 27 15 chr4 171412554 171417498 -30910849 - L1MA3 LINE L1 -17 7707 2631 2363 82 0 0 chr4 171417498 171417803 -30910544 - AluY SINE Alu -6 305 1 20840 162 27 15 chr4 171417803 171420451 -30907896 - L1MA3 LINE L1 -5093 2631 16 608 329 66 30 chr4 171420559 171421000 -30907347 - LTR16B LTR ERVL 0 464 8 24 0 0 0 chr4 171421049 171421073 -30907274 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr4 171421456 171421485 -30906862 + AT_rich Low_complexity Low_complexity 1 29 0 892 115 8 0 chr4 171421533 171421663 -30906684 + AluSg/x SINE Alu 164 294 -18 628 252 50 6 chr4 171422399 171422558 -30905789 + MIR3 SINE MIR 19 184 -24 1293 176 191 17 chr4 171423149 171423569 -30904778 - LTR54B LTR ERV1 -5 493 1 1890 96 10 70 chr4 171424085 171424429 -30903918 + AluY SINE Alu 1 326 0 24 0 0 0 chr4 171425505 171425529 -30902818 + AT_rich Low_complexity Low_complexity 1 24 0 271 228 103 73 chr4 171425740 171425876 -30902471 + LTR40a LTR ERVL 3 142 -377 27 62 0 0 chr4 171426759 171426807 -30901540 + AT_rich Low_complexity Low_complexity 1 48 0 463 312 96 23 chr4 171426887 171427203 -30901144 + MLT1H LTR MaLR 4 412 -183 29 47 0 0 chr4 171427529 171427572 -30900775 + AT_rich Low_complexity Low_complexity 1 43 0 1669 120 10 70 chr4 171429374 171429718 -30898629 + AluY SINE Alu 1 326 0 275 149 0 0 chr4 171431367 171431414 -30896933 - MLT2B1 LTR ERVL 0 515 469 230 198 47 28 chr4 171431422 171431528 -30896819 + (TA)n Simple_repeat Simple_repeat 1 108 0 2346 196 52 13 chr4 171431537 171431997 -30896350 - MLT2B1 LTR ERVL -42 478 1 779 179 70 0 chr4 171431998 171432154 -30896193 - ERVL-B1 LTR ERVL -8 5756 5590 2303 74 3 3 chr4 171432194 171432491 -30895856 - AluY SINE Alu -14 297 1 247 196 0 0 chr4 171432600 171432656 -30895691 - MLT2B1 LTR ERVL 0 520 465 228 203 57 38 chr4 171432657 171432815 -30895532 + (TA)n Simple_repeat Simple_repeat 2 162 0 4491 150 18 67 chr4 171432959 171433813 -30894534 - ERVL-B1 LTR ERVL -181 5583 4772 326 267 78 9 chr4 171433862 171433978 -30894369 - L2 LINE L2 -541 2773 2650 3977 183 66 26 chr4 171434775 171435607 -30892740 - MER6 DNA MER2_type 0 865 1 394 320 8 0 chr4 171435777 171435902 -30892445 - MIR SINE MIR -30 232 107 390 156 306 69 chr4 171436428 171436588 -30891759 - MER6 DNA MER2_type -42 823 626 2291 89 0 3 chr4 171436685 171436988 -30891359 - AluY SINE Alu -9 302 1 598 76 0 89 chr4 171437701 171437844 -30890503 + (TA)n Simple_repeat Simple_repeat 2 131 -14 345 47 0 0 chr4 171437844 171437887 -30890460 + (TC)n Simple_repeat Simple_repeat 2 44 0 598 76 0 89 chr4 171437887 171437901 -30890446 + (TA)n Simple_repeat Simple_repeat 131 145 0 2028 135 3 0 chr4 171437996 171438299 -30890048 + AluSx SINE Alu 1 304 -8 249 301 54 21 chr4 171438630 171438723 -30889624 - MIR SINE MIR -152 110 15 30 0 0 0 chr4 171439379 171439409 -30888938 + AT_rich Low_complexity Low_complexity 1 30 0 230 109 43 0 chr4 171439415 171439461 -30888886 - L1MB5 LINE L1 0 6174 6127 11835 225 36 21 chr4 171439465 171440872 -30887475 - L1PA16 LINE L1 -3 7601 6217 194 0 0 37 chr4 171440872 171440899 -30887448 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1620 84 0 0 chr4 171440901 171441115 -30887232 - L1PA6 LINE L1 -13 6141 5928 11835 225 36 21 chr4 171441115 171443873 -30884474 - L1PA16 LINE L1 -1387 6217 3378 2005 114 7 0 chr4 171443873 171444183 -30884164 + AluSg SINE Alu 3 314 0 11835 225 36 21 chr4 171444183 171444288 -30884059 - L1PA16 LINE L1 -4226 3378 3276 247 196 0 0 chr4 171444455 171444511 -30883836 + MLT2B1 LTR ERVL 465 520 0 2075 95 7 7 chr4 171444620 171444933 -30883414 + AluSc SINE Alu 1 313 0 3319 248 35 17 chr4 171444933 171446107 -30882240 - L1PA16 LINE L1 -4203 3381 2182 777 342 28 21 chr4 171446632 171447021 -30881326 - L1PA16 LINE L1 -6395 1179 788 649 246 14 2 chr4 171447109 171447279 -30881068 - L1MB5 LINE L1 -32 6142 5970 1530 252 21 6 chr4 171447443 171448100 -30880247 + L1M4 LINE L1 2213 2968 -3178 2610 261 73 49 chr4 171448224 171448991 -30879356 - L1M4c LINE L1 -4606 2040 1293 180 0 0 0 chr4 171448991 171449011 -30879336 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2610 261 73 49 chr4 171449011 171449048 -30879299 - L1M4c LINE L1 -5353 1293 1258 2244 115 0 7 chr4 171449048 171449352 -30878995 - AluSq SINE Alu -11 302 1 2610 261 73 49 chr4 171449352 171450468 -30877879 - L1M4c LINE L1 -5388 1258 75 2296 72 0 26 chr4 171451172 171451477 -30876870 + AluY SINE Alu 1 297 -14 253 304 43 43 chr4 171451482 171451597 -30876750 - MIR SINE MIR -99 163 49 23 0 0 0 chr4 171451967 171451990 -30876357 + AT_rich Low_complexity Low_complexity 1 23 0 2102 109 3 10 chr4 171452474 171452786 -30875561 + AluY SINE Alu 1 310 -1 200 268 0 0 chr4 171453961 171454017 -30874330 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 3665 152 56 17 chr4 171454087 171454803 -30873544 + Tigger2 DNA MER2_type 1 744 -1974 1426 166 20 0 chr4 171454865 171455118 -30873229 + Tigger2 DNA MER2_type 2461 2718 0 307 337 69 26 chr4 171455297 171455600 -30872747 - L1MB5 LINE L1 -294 5827 5512 456 351 39 35 chr4 171455969 171456479 -30871868 - L1ME LINE L1 -298 5823 5312 21 0 0 0 chr4 171508308 171508329 -30820018 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr4 171510233 171510276 -30818071 + AT_rich Low_complexity Low_complexity 1 43 0 27 49 0 0 chr4 171512058 171512099 -30816248 + AT_rich Low_complexity Low_complexity 1 41 0 2119 113 0 0 chr4 171512143 171512435 -30815912 - AluY SINE Alu -19 292 1 2763 190 68 75 chr4 171512799 171513583 -30814764 - L1 LINE L1 -1134 5012 4235 2763 185 85 11 chr4 171513573 171514465 -30813882 + L1MB1 LINE L1 4954 5886 -303 650 162 45 98 chr4 171514593 171514816 -30813531 + L1M3 LINE L1 5572 5779 -404 * 3509 202 22 48 chr4 171514812 171515288 -30813059 + L1MB3 LINE L1 4951 5438 -745 2141 79 0 4 chr4 171515288 171515587 -30812760 + AluY SINE Alu 3 300 0 3509 202 22 48 chr4 171515587 171516300 -30812047 + L1MB3 LINE L1 5438 6116 -67 250 388 12 0 chr4 171516318 171516403 -30811944 + MIR SINE MIR 26 111 -151 23 0 0 0 chr4 171516483 171516506 -30811841 + AT_rich Low_complexity Low_complexity 1 23 0 217 386 14 0 chr4 171516523 171516663 -30811684 + MIR SINE MIR 119 260 -2 211 196 137 0 chr4 171516971 171517022 -30811325 + MIR SINE MIR 60 117 -145 196 329 14 0 chr4 171517303 171517376 -30810971 - MIR SINE MIR -28 234 161 195 42 0 0 chr4 171517541 171517565 -30810782 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 653 259 34 98 chr4 171518734 171519000 -30809347 + MIR SINE MIR 13 261 -1 252 0 0 0 chr4 171519229 171519257 -30809090 + (A)n Simple_repeat Simple_repeat 1 28 0 1132 227 13 116 chr4 171519394 171519943 -30808404 - L1 LINE L1 -1771 4375 3890 234 0 0 0 chr4 171519943 171519969 -30808378 + (TG)n Simple_repeat Simple_repeat 2 27 0 1132 227 13 116 chr4 171519969 171520014 -30808333 - L1 LINE L1 -2256 3890 3842 1046 247 67 87 chr4 171520033 171520314 -30808033 + MLT1B LTR MaLR 3 275 -115 2090 136 0 0 chr4 171520314 171520623 -30807724 - AluSc SINE Alu 0 309 1 1046 247 67 87 chr4 171520623 171520730 -30807617 + MLT1B LTR MaLR 275 383 -7 1801 243 81 49 chr4 171520733 171521238 -30807109 - L1 LINE L1 -2316 3830 3288 2401 73 0 0 chr4 171521238 171521539 -30806808 - AluY SINE Alu -10 301 1 1801 243 81 49 chr4 171521539 171521832 -30806515 - L1 LINE L1 -2858 3288 3006 1295 251 103 71 chr4 171521850 171522568 -30805779 - L1M4 LINE L1 -4976 1566 826 25 75 0 0 chr4 171522606 171522659 -30805688 + AT_rich Low_complexity Low_complexity 1 53 0 5567 195 14 9 chr4 171522662 171523020 -30805327 - L1PB1 LINE L1 0 6151 5796 282 56 0 0 chr4 171523020 171523056 -30805291 + (TG)n Simple_repeat Simple_repeat 2 37 0 5567 195 14 9 chr4 171523056 171524618 -30803729 - L1PB1 LINE L1 -355 5796 4086 329 175 38 0 chr4 171524723 171524803 -30803544 - L1MA8 LINE L1 -11 6280 6198 1645 151 11 0 chr4 171524803 171525074 -30803273 + L1MA8 LINE L1 5677 5950 -350 303 28 0 0 chr4 171525206 171525242 -30803105 + (TG)n Simple_repeat Simple_repeat 2 37 0 1874 124 13 30 chr4 171525253 171525552 -30802795 + MLT1A1 LTR MaLR 19 312 -53 872 219 0 24 chr4 171525574 171525779 -30802568 + L1MA8 LINE L1 5937 6136 -155 2022 102 3 14 chr4 171525914 171526043 -30802304 + AluSx SINE Alu 1 130 -176 186 43 0 0 chr4 171526043 171526066 -30802281 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2022 102 3 14 chr4 171526066 171526245 -30802102 + AluSx SINE Alu 130 306 0 224 337 20 20 chr4 171526337 171526438 -30801909 + MIR SINE MIR 53 153 -109 748 289 26 17 chr4 171527384 171527616 -30800731 - MIR SINE MIR -24 238 5 28 48 0 0 chr4 171527723 171527765 -30800582 + AT_rich Low_complexity Low_complexity 1 42 0 960 127 0 7 chr4 171527802 171527944 -30800403 - AluJo SINE Alu -171 141 1 283 250 36 79 chr4 171529807 171529947 -30798400 + LTR65 LTR ERV1 20 153 -516 2005 164 7 55 chr4 171530113 171530516 -30797831 + MLT1B LTR MaLR 1 384 -6 357 308 32 12 chr4 171530529 171530717 -30797630 + LTR65 LTR ERV1 380 663 -6 523 153 10 10 chr4 171531274 171531372 -30796975 + MER4A LTR ERV1 1 98 -566 1619 146 164 75 chr4 171531372 171531743 -30796604 + MER4A LTR ERV1 261 664 0 28 91 0 0 chr4 171532324 171532401 -30795946 + AT_rich Low_complexity Low_complexity 1 77 0 248 253 42 145 chr4 171532849 171533015 -30795332 + MIR SINE MIR 48 196 -66 21 0 0 0 chr4 171533037 171533058 -30795289 + AT_rich Low_complexity Low_complexity 1 21 0 1524 184 31 10 chr4 171533895 171534188 -30794159 + AluJo SINE Alu 6 304 -8 23 33 0 0 chr4 171534242 171534272 -30794075 + AT_rich Low_complexity Low_complexity 1 30 0 1586 206 3 0 chr4 171534352 171534639 -30793708 - AluJb SINE Alu -24 288 1 2058 293 68 11 chr4 171535203 171536492 -30791855 + L1M4 LINE L1 2777 4146 -2000 720 180 28 22 chr4 171536492 171536670 -30791677 + L1MB8 LINE L1 6000 6178 0 2058 293 68 11 chr4 171536670 171536705 -30791642 + L1M4 LINE L1 4146 4178 -1968 1486 175 43 142 chr4 171537005 171537428 -30790919 + MSTB LTR MaLR 77 426 0 251 342 51 0 chr4 171537749 171537866 -30790481 + MER103 DNA DNA 1 123 -43 312 292 163 49 chr4 171538237 171538501 -30789846 - L1ME LINE L1 -490 5631 5338 24 32 0 0 chr4 171539404 171539435 -30788912 + AT_rich Low_complexity Low_complexity 1 31 0 728 334 159 25 chr4 171539724 171540687 -30787660 + L2 LINE L2 1968 3098 -215 1860 138 7 0 chr4 171540687 171541003 -30787344 + AluSx SINE Alu 1 318 0 728 334 159 25 chr4 171541003 171541064 -30787283 + L2 LINE L2 3098 3149 -164 795 212 3 132 chr4 171541204 171541280 -30787067 + L1MA10 LINE L1 6050 6134 -200 2813 13 0 0 chr4 171541280 171541592 -30786755 + AluYb8 SINE Alu 1 312 -6 795 212 3 132 chr4 171541592 171541841 -30786506 + L1MA10 LINE L1 6134 6333 -1 21 0 0 0 chr4 171543625 171543646 -30784701 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 171544212 171544242 -30784105 + AT_rich Low_complexity Low_complexity 1 30 0 2004 90 52 10 chr4 171545197 171545486 -30782861 + AluSc SINE Alu 1 301 -8 37 76 0 0 chr4 171545780 171545859 -30782488 + AT_rich Low_complexity Low_complexity 1 79 0 275 304 22 22 chr4 171546028 171546120 -30782227 - MIR SINE MIR -21 241 150 433 97 0 56 chr4 171546120 171546192 -30782155 + MADE1 DNA Mariner 1 68 -12 373 107 0 0 chr4 171546202 171546258 -30782089 + MADE1 DNA Mariner 25 80 0 326 321 44 22 chr4 171546265 171546402 -30781945 - MIR SINE MIR -115 147 8 2324 93 0 3 chr4 171546499 171546810 -30781537 - AluSx SINE Alu 0 312 3 201 74 0 0 chr4 171547197 171547224 -30781123 + (TA)n Simple_repeat Simple_repeat 2 28 0 449 104 0 15 chr4 171548199 171548286 -30780061 + AluSc SINE Alu 213 298 0 42 36 0 0 chr4 171550715 171550771 -30777576 + AT_rich Low_complexity Low_complexity 1 56 0 24 77 0 0 chr4 171551259 171551311 -30777036 + AT_rich Low_complexity Low_complexity 1 52 0 2579 273 52 51 chr4 171551418 171551588 -30776759 - L1ME1 LINE L1 -31 6135 5967 1970 138 135 11 chr4 171551588 171551966 -30776381 + MSTA LTR MaLR 1 425 -3 2579 273 52 51 chr4 171551966 171554032 -30774315 - L1ME1 LINE L1 -199 5967 3902 22 35 0 0 chr4 171554500 171554529 -30773818 + AT_rich Low_complexity Low_complexity 1 29 0 218 313 35 52 chr4 171554666 171554781 -30773566 + MIR SINE MIR 18 130 -78 680 260 21 10 chr4 171554978 171555170 -30773177 - MER21B LTR ERV1 -3 860 667 2756 200 37 14 chr4 171555171 171555737 -30772610 - MER21B LTR ERV1 -73 790 212 181 136 23 23 chr4 171556219 171556263 -30772084 + A-rich Low_complexity Low_complexity 2 45 0 1636 168 180 27 chr4 171559333 171559738 -30768609 + MLT1C LTR MaLR 1 467 0 2154 102 0 0 chr4 171560248 171560575 -30767772 - AluSq SINE Alu 0 327 1 1933 181 17 0 chr4 171561032 171561391 -30766956 - MLT1A1 LTR MaLR 0 365 1 635 201 124 81 chr4 171561392 171561832 -30766515 + MLT1D LTR MaLR 1 626 0 1434 116 14 5 chr4 171561937 171562153 -30766194 - AluSg/x SINE Alu -6 306 89 216 380 53 35 chr4 171562504 171562675 -30765672 - L2 LINE L2 -604 2710 2537 22 0 0 0 chr4 171562736 171562758 -30765589 + AT_rich Low_complexity Low_complexity 1 22 0 2092 244 53 24 chr4 171563225 171563926 -30764421 - L1M4 LINE L1 -896 5250 4530 210 176 0 95 chr4 171565282 171565356 -30762991 + A-rich Low_complexity Low_complexity 1 67 0 434 219 6 110 chr4 171566682 171566846 -30761501 + MER63 DNA MER1_type 2 774 -62 21 71 0 0 chr4 171568153 171568195 -30760152 + AT_rich Low_complexity Low_complexity 1 42 0 198 0 0 0 chr4 171569194 171569216 -30759131 + (T)n Simple_repeat Simple_repeat 1 22 0 4482 147 19 39 chr4 171569445 171570103 -30758244 + L1PB4 LINE L1 5325 5964 -192 2337 62 23 0 chr4 171570103 171570407 -30757940 + AluY SINE Alu 1 311 0 4482 147 19 39 chr4 171570407 171570594 -30757753 + L1PB4 LINE L1 5964 6153 -3 953 169 85 75 chr4 171570854 171571173 -30757174 + MER33 DNA MER1_type 2 323 -1 296 79 0 0 chr4 171571303 171571341 -30757006 + L1MA9 LINE L1 5907 5944 -368 1542 178 45 20 chr4 171572095 171572387 -30755960 + AluJo SINE Alu 3 301 -11 524 56 14 0 chr4 171572793 171572865 -30755482 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 231 331 47 34 chr4 171573089 171573237 -30755110 + L2 LINE L2 1852 2001 -1313 1141 244 73 25 chr4 171573296 171573652 -30754695 + MLT1A2 LTR MaLR 1 373 -1 457 366 34 27 chr4 171573837 171574129 -30754218 + L2 LINE L2 2340 2633 -681 2462 52 0 7 chr4 171574348 171574656 -30753691 + AluY SINE Alu 1 306 -5 25 31 0 0 chr4 171574708 171574740 -30753607 + AT_rich Low_complexity Low_complexity 1 32 0 24 96 0 0 chr4 171575771 171575844 -30752503 + AT_rich Low_complexity Low_complexity 1 73 0 198 0 0 0 chr4 171577954 171577976 -30750371 + (CA)n Simple_repeat Simple_repeat 1 22 0 2220 111 0 0 chr4 171578200 171578506 -30749841 - AluSx SINE Alu -6 306 1 218 240 0 40 chr4 171578810 171578860 -30749487 - MIR SINE MIR -155 107 60 23 33 0 0 chr4 171579094 171579124 -30749223 + AT_rich Low_complexity Low_complexity 1 30 0 2041 93 4 0 chr4 171579127 171579395 -30748952 - AluSx SINE Alu -33 279 11 24 53 0 0 chr4 171580159 171580197 -30748150 + AT_rich Low_complexity Low_complexity 1 38 0 228 376 50 10 chr4 171581029 171581130 -30747217 + MIR SINE MIR 21 125 -137 303 145 36 36 chr4 171582610 171582693 -30745654 - L1MA10 LINE L1 -2 6332 6250 568 76 13 0 chr4 171582733 171582851 -30745496 - AluSg/x SINE Alu 0 320 202 722 292 17 8 chr4 171583722 171583958 -30744389 - L2 LINE L2 -2 3311 3074 199 424 29 0 chr4 171583976 171584148 -30744199 - L2 LINE L2 -3106 208 32 194 196 39 0 chr4 171584528 171584579 -30743768 + CT-rich Low_complexity Low_complexity 3 55 0 290 305 49 0 chr4 171584598 171584680 -30743667 - L2 LINE L2 -37 3276 3191 2225 109 0 0 chr4 171584843 171585146 -30743201 - AluSq SINE Alu -10 303 1 2113 90 3 3 chr4 171586387 171586676 -30741671 - AluSg SINE Alu -16 294 6 355 365 66 29 chr4 171587095 171587336 -30741011 + L2 LINE L2 190 439 -2875 585 60 20 20 chr4 171587445 171587545 -30740802 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 5490 191 39 19 chr4 171589266 171590515 -30737832 + L1 LINE L1 2987 4260 -1886 3436 134 44 5 chr4 171590515 171591089 -30737258 + L1MA2 LINE L1 5709 6304 0 25 0 0 0 chr4 171591357 171591382 -30736965 + AT_rich Low_complexity Low_complexity 1 25 0 547 301 82 18 chr4 171591896 171592115 -30736232 - MIR SINE MIR -24 238 6 256 159 0 0 chr4 171592367 171592411 -30735936 + Alu SINE Alu 2 45 -256 24 32 0 0 chr4 171592921 171592952 -30735395 + AT_rich Low_complexity Low_complexity 1 31 0 5651 167 10 1 chr4 171592958 171594567 -30733780 + L1P5 LINE L1 4163 5784 -367 435 92 0 0 chr4 171594567 171594632 -30733715 + Alu SINE Alu 1 65 -246 677 267 34 46 chr4 171594732 171594994 -30733353 + MLT1C LTR MaLR 209 467 0 234 154 0 99 chr4 171595154 171595245 -30733102 + A-rich Low_complexity Low_complexity 5 86 0 30 83 0 0 chr4 171595275 171595347 -30733000 + AT_rich Low_complexity Low_complexity 1 72 0 183 308 0 0 chr4 171596972 171597024 -30731323 - MIR SINE MIR -67 141 90 291 190 0 0 chr4 171597058 171597116 -30731231 + (TA)n Simple_repeat Simple_repeat 2 59 0 34 24 0 0 chr4 171597195 171597236 -30731111 + AT_rich Low_complexity Low_complexity 1 41 0 3350 148 13 45 chr4 171597284 171597965 -30730382 - L1MA4 LINE L1 -16 6284 5626 471 104 13 0 chr4 171597966 171598043 -30730304 + L1MA4 LINE L1 5529 5606 -696 1989 135 0 0 chr4 171598353 171598634 -30729713 + AluSx SINE Alu 1 284 -28 288 0 0 0 chr4 171598634 171598666 -30729681 + (CA)n Simple_repeat Simple_repeat 1 32 0 1989 135 0 0 chr4 171598666 171598680 -30729667 + AluSx SINE Alu 283 296 -16 281 314 124 18 chr4 171599071 171599240 -30729107 - L3b LINE CR1 -94 1489 1303 601 253 52 36 chr4 171599953 171600147 -30728200 - MIR SINE MIR 0 262 66 675 37 0 0 chr4 171600301 171600383 -30727964 + (TA)n Simple_repeat Simple_repeat 1 82 0 276 323 58 26 chr4 171600468 171600657 -30727690 - L2 LINE L2 -1257 2057 1863 226 195 35 23 chr4 171600683 171600770 -30727577 + (TTAA)n Simple_repeat Simple_repeat 2 89 0 24 0 0 0 chr4 171601863 171601887 -30726460 + AT_rich Low_complexity Low_complexity 1 24 0 187 274 59 0 chr4 171601992 171602043 -30726304 - L2 LINE L2 -30 3283 3230 4452 149 46 32 chr4 171602113 171603008 -30725339 - L1MC1 LINE L1 0 6333 5427 202 124 26 53 chr4 171604021 171604134 -30724213 + CT-rich Low_complexity Low_complexity 2 111 0 1096 53 41 6 chr4 171604137 171604308 -30724039 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 842 142 0 58 chr4 171604315 171604470 -30723877 - AluSg/x SINE Alu -32 280 135 1796 159 0 0 chr4 171604470 171604774 -30723573 - AluSx SINE Alu 0 304 1 34 24 0 0 chr4 171604893 171604934 -30723413 + AT_rich Low_complexity Low_complexity 1 41 0 2466 65 3 0 chr4 171605151 171605461 -30722886 + AluY SINE Alu 1 311 0 291 261 58 0 chr4 171605543 171605612 -30722735 - MIR SINE MIR -39 223 151 1922 141 58 35 chr4 171608668 171609064 -30719283 - L1MA6 LINE L1 -5 6295 5891 1639 173 0 39 chr4 171609156 171609463 -30718884 + AluJo SINE Alu 15 309 -3 1236 254 33 10 chr4 171609862 171610259 -30718088 + LTR37A LTR ERV1 21 426 0 401 357 21 21 chr4 171610883 171611026 -30717321 - MER91A DNA MER1_type -25 171 29 822 248 10 15 chr4 171611965 171612163 -30716184 - MER58A DNA MER1_type -6 218 22 6236 200 164 27 chr4 171612380 171613924 -30714423 + MER52A LTR ERV1 1 1755 0 2143 122 0 0 chr4 171614152 171614447 -30713900 - AluSx SINE Alu -17 295 1 749 227 6 11 chr4 171614642 171614818 -30713529 - MER5B DNA MER1_type 0 178 4 213 261 22 11 chr4 171615474 171615566 -30712781 + (TA)n Simple_repeat Simple_repeat 2 94 0 283 151 110 0 chr4 171615704 171615777 -30712570 + MER53 DNA DNA 5 85 -104 407 228 41 24 chr4 171616055 171616178 -30712169 - L1MA9 LINE L1 -38 6274 6150 * 1682 181 44 0 chr4 171616156 171616494 -30711853 - L1 LINE L1 -1154 4992 4640 440 277 132 29 chr4 171617033 171617343 -30711004 - L1MDa LINE L1 -3937 2603 2262 566 343 36 11 chr4 171618543 171618781 -30709566 - MIR SINE MIR -12 250 10 436 227 109 0 chr4 171619112 171619231 -30709116 + MER5A DNA MER1_type 58 189 0 278 371 107 0 chr4 171619598 171619776 -30708571 + MIR SINE MIR 37 233 -29 305 369 62 11 chr4 171620214 171620390 -30707957 - MIR SINE MIR -63 199 15 28 48 0 0 chr4 171622198 171622240 -30706107 + AT_rich Low_complexity Low_complexity 1 42 0 245 217 58 0 chr4 171624079 171624148 -30704199 - MLT1D LTR MaLR -2 503 431 1868 255 39 57 chr4 171624274 171624909 -30703438 - MLT1E2 LTR MaLR -2 624 1 26 0 0 0 chr4 171625108 171625134 -30703213 + AT_rich Low_complexity Low_complexity 1 26 0 231 342 86 29 chr4 171625867 171626110 -30702237 - L2 LINE L2 -635 2679 2423 1469 161 112 7 chr4 171626353 171626657 -30701690 + MER44D DNA MER2_type 3 608 -1 378 333 53 6 chr4 171626657 171626828 -30701519 - MIR SINE MIR -26 236 58 335 59 0 20 chr4 171627417 171627468 -30700879 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 297 0 0 0 chr4 171627735 171627768 -30700579 + (CA)n Simple_repeat Simple_repeat 2 34 0 651 217 0 0 chr4 171627784 171627904 -30700443 - FLAM_C SINE Alu -23 120 1 264 336 9 0 chr4 171627905 171628015 -30700332 - L2 LINE L2 -1982 1332 1222 276 222 16 0 chr4 171628051 171628114 -30700233 - MER58 DNA MER1_type -1 2419 2356 513 297 23 87 chr4 171628374 171628640 -30699707 + MIR SINE MIR 13 261 -1 243 0 0 0 chr4 171628870 171628897 -30699450 + (A)n Simple_repeat Simple_repeat 1 27 0 2065 111 3 13 chr4 171629020 171629318 -30699029 - AluY SINE Alu -16 295 1 22 0 0 0 chr4 171629879 171629901 -30698446 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 171630968 171630990 -30697357 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 171631087 171631117 -30697230 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr4 171631150 171631176 -30697171 + AT_rich Low_complexity Low_complexity 1 26 0 23 86 0 0 chr4 171631759 171631817 -30696530 + AT_rich Low_complexity Low_complexity 1 58 0 3855 127 61 56 chr4 171633895 171634665 -30693682 + LTR1 LTR ERV1 12 785 0 717 312 54 17 chr4 171636470 171636768 -30691579 + MLT1J2 LTR MaLR 21 329 -121 1672 199 3 3 chr4 171637013 171637320 -30691027 - AluJo SINE Alu -5 307 1 5155 88 21 26 chr4 171637413 171638184 -30690163 - L1PB1 LINE L1 -1 6150 5384 7010 208 123 18 chr4 171638184 171639772 -30688575 - MER52A LTR ERV1 0 1755 1 13145 200 51 9 chr4 171639772 171643059 -30685288 - L1PBa LINE L1 -762 6100 2616 2266 155 72 5 chr4 171643056 171644474 -30683873 - L1PBa LINE L1 -5205 1658 1 * 242 140 0 20 chr4 171645122 171645172 -30683175 + (TA)n Simple_repeat Simple_repeat 2 50 0 511 179 16 32 chr4 171647106 171647229 -30681118 + L1MA9 LINE L1 6162 6282 -30 22 80 0 0 chr4 171647266 171647316 -30681031 + AT_rich Low_complexity Low_complexity 1 50 0 13686 25 0 0 chr4 171648335 171649985 -30678362 - L1PA3 LINE L1 -2465 3681 2032 14108 31 0 0 chr4 171649985 171652485 -30675862 + L1PA3 LINE L1 3688 6188 0 195 330 165 16 chr4 171652519 171652701 -30675646 - L2 LINE L2 -453 2861 2653 41 0 0 0 chr4 171652717 171652758 -30675589 + AT_rich Low_complexity Low_complexity 1 41 0 378 347 84 21 chr4 171652851 171653090 -30675257 - L2 LINE L2 -865 2449 2196 1946 96 0 22 chr4 171654296 171654568 -30673779 - AluY SINE Alu -45 266 1 904 223 147 11 chr4 171654776 171655246 -30673101 + L1ME2 LINE L1 2694 3227 -2919 1129 221 34 86 chr4 171655408 171655851 -30672496 + L1ME2 LINE L1 5726 6145 -19 244 276 46 11 chr4 171656809 171656896 -30671451 + LTR33 LTR ERVL 102 191 -330 280 351 41 14 chr4 171656982 171657224 -30671123 + LTR33 LTR ERVL 235 521 0 464 272 118 30 chr4 171657501 171657670 -30670677 - L2 LINE L2 0 3313 3130 2420 92 17 8 chr4 171659167 171659524 -30668823 - L1PA7 LINE L1 -1413 4733 4374 6573 58 24 8 chr4 171659517 171660930 -30667417 + L1PA7 LINE L1 4729 6154 0 23 0 0 0 chr4 171660940 171660963 -30667384 + AT_rich Low_complexity Low_complexity 1 23 0 560 297 133 0 chr4 171661375 171661631 -30666716 + MARNA DNA Mariner 170 459 -127 2058 108 0 11 chr4 171661762 171662049 -30666298 + AluSx SINE Alu 14 297 -15 255 79 0 0 chr4 171662057 171662095 -30666252 + (TG)n Simple_repeat Simple_repeat 1 38 0 352 273 68 61 chr4 171662562 171662800 -30665547 - MIR SINE MIR -11 251 10 696 293 69 4 chr4 171663273 171663505 -30664842 - MIR SINE MIR -5 257 11 2198 104 3 3 chr4 171663741 171664048 -30664299 + AluSx SINE Alu 2 308 -4 1951 134 3 3 chr4 171664844 171665150 -30663197 + AluSx SINE Alu 2 307 -5 25 83 0 0 chr4 171666183 171666243 -30662104 + AT_rich Low_complexity Low_complexity 1 60 0 297 0 0 0 chr4 171666617 171666650 -30661697 + (CA)n Simple_repeat Simple_repeat 2 34 0 1068 97 46 0 chr4 171667842 171668094 -30660253 + L1PA11 LINE L1 5728 6113 -61 208 320 72 31 chr4 171668221 171668318 -30660029 - MIR SINE MIR -109 153 53 285 216 23 23 chr4 171668601 171668689 -30659658 + (TA)n Simple_repeat Simple_repeat 1 88 0 258 32 0 0 chr4 171668981 171669012 -30659335 + (CA)n Simple_repeat Simple_repeat 2 32 0 29 0 0 0 chr4 171669262 171669291 -30659056 + AT_rich Low_complexity Low_complexity 1 29 0 3024 108 9 0 chr4 171669481 171670104 -30658243 + L1PA11 LINE L1 5424 6174 0 1815 119 0 0 chr4 171670348 171670615 -30657732 - AluSx SINE Alu 0 307 41 212 381 97 0 chr4 171670952 171671086 -30657261 + MIR SINE MIR 58 204 -58 27 49 0 0 chr4 171671949 171671990 -30656357 + AT_rich Low_complexity Low_complexity 1 41 0 180 0 0 0 chr4 171672091 171672111 -30656236 + (T)n Simple_repeat Simple_repeat 1 20 0 28 29 0 0 chr4 171672253 171672288 -30656059 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr4 171672535 171672571 -30655776 + AT_rich Low_complexity Low_complexity 1 36 0 31 26 0 0 chr4 171673451 171673489 -30654858 + AT_rich Low_complexity Low_complexity 1 38 0 250 387 42 25 chr4 171673577 171673696 -30654651 - L2 LINE L2 -11 3261 3141 231 88 0 0 chr4 171673752 171673786 -30654561 + (TA)n Simple_repeat Simple_repeat 1 34 0 685 297 138 50 chr4 171673953 171674454 -30653893 - L2 LINE L2 -337 2977 2433 269 250 67 29 chr4 171674702 171674806 -30653541 + L2 LINE L2 3131 3238 -75 1834 171 8 32 chr4 171675069 171675443 -30652904 + MLT1A1 LTR MaLR 1 365 0 384 351 15 8 chr4 171675480 171675614 -30652733 - L2 LINE L2 -4 3268 3134 186 336 82 48 chr4 171676944 171677090 -30651257 - L2 LINE L2 -212 3060 2910 2262 45 0 0 chr4 171677107 171677408 -30650939 + AluY SINE Alu 12 312 0 210 71 0 0 chr4 171678003 171678031 -30650316 + (CA)n Simple_repeat Simple_repeat 1 28 0 1942 128 23 3 chr4 171678230 171678536 -30649811 + AluSx SINE Alu 1 312 0 226 94 0 75 chr4 171678543 171678596 -30649751 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 2100 123 3 0 chr4 171679542 171679850 -30648497 + AluSc SINE Alu 1 309 0 420 322 39 19 chr4 171681365 171681570 -30646777 + MIR SINE MIR 25 233 -29 2179 114 0 7 chr4 171681682 171681980 -30646367 + AluSc SINE Alu 4 299 -10 387 0 0 0 chr4 171683555 171683598 -30644749 + (TG)n Simple_repeat Simple_repeat 1 43 0 29 84 0 0 chr4 171683748 171683819 -30644528 + AT_rich Low_complexity Low_complexity 1 71 0 25 0 0 0 chr4 171683964 171683989 -30644358 + AT_rich Low_complexity Low_complexity 1 25 0 238 254 168 24 chr4 171684924 171685133 -30643214 + L1ME4a LINE L1 5692 5930 -191 1700 89 97 0 chr4 171686029 171686314 -30642033 + AluSx SINE Alu 1 310 0 229 343 65 9 chr4 171686430 171686538 -30641809 + MIR SINE MIR 38 151 -111 862 219 67 24 chr4 171686615 171686825 -30641522 + MER20 DNA MER1_type 1 219 0 246 348 112 0 chr4 171687216 171687305 -30641042 + L2 LINE L2 3138 3236 -36 225 94 0 0 chr4 171687430 171687462 -30640885 + (CA)n Simple_repeat Simple_repeat 1 32 0 242 273 61 50 chr4 171687606 171687705 -30640642 + L2 LINE L2 3204 3303 -10 21 36 0 0 chr4 171688053 171688081 -30640266 + AT_rich Low_complexity Low_complexity 1 28 0 367 340 108 16 chr4 171688859 171689053 -30639294 + MIR SINE MIR 51 262 0 1101 117 180 113 chr4 171689077 171689360 -30638987 - AluJb SINE Alu 0 302 1 198 306 92 41 chr4 171689496 171689594 -30638753 - MER5A DNA MER1_type 0 189 87 315 274 11 42 chr4 171689627 171689722 -30638625 - L2 LINE L2 -1 3312 3221 307 353 70 21 chr4 171689975 171690162 -30638185 - L2 LINE L2 -900 2414 2219 382 151 11 11 chr4 171690563 171690656 -30637691 + CT-rich Low_complexity Low_complexity 4 96 0 26 30 0 0 chr4 171690667 171690700 -30637647 + AT_rich Low_complexity Low_complexity 1 33 0 319 376 28 19 chr4 171690934 171691298 -30637049 - L1ME3A LINE L1 -316 5854 5488 469 282 45 55 chr4 171691529 171691841 -30636506 - L1MEd LINE L1 -4873 1246 938 2814 159 73 25 chr4 171692246 171692794 -30635553 + MER51A LTR ERV1 19 592 -42 846 195 0 25 chr4 171693689 171693848 -30634499 + FRAM SINE Alu 7 161 -15 25 0 0 0 chr4 171693856 171693881 -30634466 + AT_rich Low_complexity Low_complexity 1 25 0 2197 88 7 0 chr4 171693993 171694289 -30634058 + AluSp SINE Alu 1 298 -15 228 238 56 8 chr4 171694297 171694423 -30633924 + (TATAA)n Simple_repeat Simple_repeat 2 133 0 25 31 0 0 chr4 171694447 171694479 -30633868 + AT_rich Low_complexity Low_complexity 1 32 0 1674 59 0 0 chr4 171694648 171694850 -30633497 + AluY SINE Alu 14 215 -96 843 10 0 0 chr4 171694951 171695047 -30633300 + AluY SINE Alu 181 276 -35 1110 54 0 0 chr4 171695049 171695179 -30633168 - AluY SINE Alu -180 131 2 23 54 0 0 chr4 171695203 171695240 -30633107 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 171695798 171695819 -30632528 + AT_rich Low_complexity Low_complexity 1 21 0 1068 324 69 53 chr4 171696157 171697159 -30631188 + L2 LINE L2 2216 3227 -86 33 25 0 0 chr4 171697505 171697545 -30630802 + AT_rich Low_complexity Low_complexity 1 40 0 1979 267 27 29 chr4 171697646 171698271 -30630076 + L1ME1 LINE L1 5524 6147 -19 67 25 0 0 chr4 171698375 171698456 -30629891 + AT_rich Low_complexity Low_complexity 1 81 0 222 37 0 0 chr4 171698929 171698956 -30629391 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr4 171700847 171700870 -30627477 + AT_rich Low_complexity Low_complexity 1 23 0 1581 109 61 4 chr4 171701286 171701516 -30626831 - AluSg SINE Alu -22 288 46 23 33 0 0 chr4 171701926 171701956 -30626391 + AT_rich Low_complexity Low_complexity 1 30 0 1556 195 3 10 chr4 171702674 171702972 -30625375 - AluJb SINE Alu -14 298 3 203 293 110 12 chr4 171703451 171703533 -30624814 - L2 LINE L2 -198 3074 2985 536 80 40 0 chr4 171704608 171704708 -30623639 + (TCTA)n Simple_repeat Simple_repeat 1 104 0 209 287 15 31 chr4 171705047 171705112 -30623235 - MIR3 SINE MIR -48 160 94 465 94 0 0 chr4 171705230 171705294 -30623053 + THE1C LTR MaLR 121 184 -191 359 113 113 0 chr4 171705285 171705347 -30623000 + THE1C LTR MaLR 296 364 0 * 1246 242 115 16 chr4 171705350 171705734 -30622613 + MLT1J2 LTR MaLR 27 448 -2 22 0 0 0 chr4 171705894 171705916 -30622431 + AT_rich Low_complexity Low_complexity 1 22 0 37 23 0 0 chr4 171706026 171706070 -30622277 + AT_rich Low_complexity Low_complexity 1 44 0 1975 135 0 4 chr4 171706586 171706867 -30621480 + AluSx SINE Alu 1 280 -32 2337 95 0 0 chr4 171707636 171707932 -30620415 + AluSg SINE Alu 4 299 -11 21 0 0 0 chr4 171709647 171709668 -30618679 + AT_rich Low_complexity Low_complexity 1 21 0 215 325 95 35 chr4 171711308 171711477 -30616870 - MIR3 SINE MIR -14 194 16 1672 162 60 0 chr4 171711706 171711990 -30616357 - AluSq SINE Alu -12 301 1 703 322 28 8 chr4 171712185 171712440 -30615907 - MIR SINE MIR -1 261 2 198 314 117 45 chr4 171712886 171713109 -30615238 - MIR SINE MIR -3 259 21 962 152 0 36 chr4 171714153 171714318 -30614029 - AluSg/x SINE Alu -7 303 145 26 0 0 0 chr4 171714320 171714346 -30614001 + AT_rich Low_complexity Low_complexity 1 26 0 32 75 0 0 chr4 171714405 171714472 -30613875 + AT_rich Low_complexity Low_complexity 1 67 0 1057 86 0 0 chr4 171714689 171714829 -30613518 + AluSp/q SINE Alu 172 311 -2 2040 192 46 15 chr4 171714838 171715292 -30613055 - L1MC2 LINE L1 -60 6284 5817 284 240 22 38 chr4 171715304 171715487 -30612860 + (TA)n Simple_repeat Simple_repeat 1 180 0 1011 202 218 28 chr4 171715487 171715849 -30612498 - L1MC2 LINE L1 -1993 5792 5362 2468 60 0 0 chr4 171715853 171716154 -30612193 - AluY SINE Alu -10 301 1 254 332 105 55 chr4 171716376 171716701 -30611646 + MLT1K LTR MaLR 248 588 0 359 333 23 23 chr4 171716809 171716941 -30611406 - L2 LINE L2 -18 3295 3164 1717 159 3 3 chr4 171717138 171717445 -30610902 + AluSx SINE Alu 1 307 0 2014 103 0 0 chr4 171717621 171717892 -30610455 + AluSx SINE Alu 40 310 -2 291 283 248 45 chr4 171718300 171718806 -30609541 - L2 LINE L2 0 3313 2702 1945 131 3 6 chr4 171718877 171719189 -30609158 + AluSx SINE Alu 1 311 -1 22 56 0 0 chr4 171719753 171719789 -30608558 + AT_rich Low_complexity Low_complexity 1 36 0 2391 46 0 7 chr4 171719792 171720077 -30608270 + AluY SINE Alu 3 285 -26 30 45 0 0 chr4 171720697 171720741 -30607606 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr4 171721290 171721312 -30607035 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr4 171721973 171722002 -30606345 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr4 171722138 171722159 -30606188 + (TATATG)n Simple_repeat Simple_repeat 2 22 0 24 32 0 0 chr4 171722440 171722471 -30605876 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr4 171724070 171724102 -30604245 + AT_rich Low_complexity Low_complexity 1 32 0 27 49 0 0 chr4 171725651 171725692 -30602655 + AT_rich Low_complexity Low_complexity 1 41 0 1427 340 136 31 chr4 171726543 171727974 -30600373 + L2 LINE L2 1080 2659 -655 23 33 0 0 chr4 171728479 171728509 -30599838 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 171728965 171728988 -30599359 + AT_rich Low_complexity Low_complexity 1 23 0 2725 84 0 0 chr4 171729530 171729885 -30598462 + THE1A LTR MaLR 1 355 0 6264 116 2 2 chr4 171729885 171730784 -30597563 + THE1A-int LTR MaLR 1 899 -681 3544 84 31 2 chr4 171730792 171731278 -30597069 + THE1A-int LTR MaLR 1081 1580 0 639 61 13 0 chr4 171731278 171731367 -30596980 + THE1A LTR MaLR 1 90 -274 265 307 20 0 chr4 171732495 171732596 -30595751 + CT-rich Low_complexity Low_complexity 2 104 0 25 31 0 0 chr4 171732685 171732717 -30595630 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr4 171734065 171734087 -30594260 + AT_rich Low_complexity Low_complexity 1 22 0 1891 120 3 39 chr4 171734173 171734482 -30593865 - AluSg SINE Alu -12 298 1 932 249 33 12 chr4 171734650 171734895 -30593452 - L1MD2 LINE L1 -45 6314 6065 26 0 0 0 chr4 171734905 171734931 -30593416 + AT_rich Low_complexity Low_complexity 1 26 0 378 245 19 9 chr4 171734951 171735114 -30593233 - MER58B DNA MER1_type 0 341 27 21 57 0 0 chr4 171735329 171735364 -30592983 + AT_rich Low_complexity Low_complexity 1 35 0 1962 115 7 0 chr4 171735858 171736167 -30592180 - AluSx SINE Alu 0 313 3 717 278 70 21 chr4 171738120 171738361 -30589986 + MIR SINE MIR 8 260 -2 218 214 0 29 chr4 171738715 171738785 -30589562 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 543 205 120 80 chr4 171738916 171739116 -30589231 + MIR SINE MIR 1 208 -54 644 129 0 35 chr4 171739550 171739666 -30588681 + L1PA13 LINE L1 6050 6161 -2 670 257 32 21 chr4 171739691 171739878 -30588469 - MER5A DNA MER1_type 0 189 1 556 290 92 36 chr4 171740128 171740528 -30587819 + MER57B LTR ERV1 1 423 -11 25 51 0 0 chr4 171741399 171741438 -30586909 + AT_rich Low_complexity Low_complexity 1 39 0 31 26 0 0 chr4 171741568 171741606 -30586741 + AT_rich Low_complexity Low_complexity 1 38 0 25 51 0 0 chr4 171741663 171741702 -30586645 + AT_rich Low_complexity Low_complexity 1 39 0 195 352 56 42 chr4 171742162 171742304 -30586043 + MIR3 SINE MIR 5 148 -60 334 48 0 0 chr4 171742601 171742643 -30585704 + MADE1 DNA Mariner 7 48 -32 266 247 12 37 chr4 171742670 171742751 -30585596 + MIR SINE MIR 56 134 -128 184 238 0 0 chr4 171742753 171742795 -30585552 + L2 LINE L2 3227 3268 -4 * 222 254 102 76 chr4 171742793 171742911 -30585436 + MIR SINE MIR 131 251 -11 213 65 0 0 chr4 171743619 171743650 -30584697 + (T)n Simple_repeat Simple_repeat 1 31 0 29 60 0 0 chr4 171744388 171744438 -30583909 + AT_rich Low_complexity Low_complexity 1 50 0 23 54 0 0 chr4 171744517 171744554 -30583793 + AT_rich Low_complexity Low_complexity 1 37 0 522 192 32 32 chr4 171745062 171745187 -30583160 - L1MC1 LINE L1 0 6333 6209 3082 222 59 22 chr4 171745279 171746285 -30582062 - L1MC1 LINE L1 -337 6007 4980 222 150 0 0 chr4 171746319 171746359 -30581988 + (TCCC)n Simple_repeat Simple_repeat 3 42 0 1118 237 25 25 chr4 171746387 171746745 -30581602 - L1MC1 LINE L1 -1194 4952 4595 444 37 0 0 chr4 171746885 171746939 -30581408 + (TG)n Simple_repeat Simple_repeat 2 55 0 442 309 20 13 chr4 171747354 171747503 -30580844 + MER63A DNA MER1_type 46 195 -15 238 354 91 20 chr4 171748808 171749006 -30579341 - MIR SINE MIR -46 216 5 222 174 0 0 chr4 171749744 171749790 -30578557 + (TA)n Simple_repeat Simple_repeat 2 47 0 25 0 0 0 chr4 171750002 171750027 -30578320 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr4 171750059 171750085 -30578262 + AT_rich Low_complexity Low_complexity 1 26 0 321 312 147 24 chr4 171751283 171751453 -30576894 - MIR SINE MIR -70 192 2 550 298 91 58 chr4 171751757 171751999 -30576348 + MIR SINE MIR 12 261 -1 1408 145 17 8 chr4 171753135 171753370 -30574977 + AluSx SINE Alu 1 237 -75 1038 285 131 28 chr4 171753583 171754881 -30573466 + HAL1 LINE L1 16 1568 -939 263 301 55 60 chr4 171755373 171755556 -30572791 + L2 LINE L2 3117 3298 -15 22 99 0 0 chr4 171755563 171755634 -30572713 + AT_rich Low_complexity Low_complexity 1 71 0 285 329 58 24 chr4 171757072 171757279 -30571068 + L1M4 LINE L1 51 264 -6278 2853 262 92 15 chr4 171757376 171758056 -30570291 + L1M4 LINE L1 1330 1956 -4688 216 0 0 0 chr4 171758056 171758080 -30570267 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2853 262 92 15 chr4 171758080 171759713 -30568634 + L1M4 LINE L1 1956 3836 -2808 608 254 93 12 chr4 171759719 171759967 -30568380 + L1M4 LINE L1 3963 4230 -2414 1483 258 22 16 chr4 171760003 171760492 -30567855 + L1M4 LINE L1 4578 5069 -1575 2453 74 7 0 chr4 171760782 171761091 -30567256 - AluY SINE Alu 0 311 1 40 73 0 0 chr4 171761567 171761649 -30566698 + AT_rich Low_complexity Low_complexity 1 82 0 25 0 0 0 chr4 171762100 171762125 -30566222 + AT_rich Low_complexity Low_complexity 1 25 0 28 48 0 0 chr4 171762154 171762196 -30566151 + AT_rich Low_complexity Low_complexity 1 42 0 2121 130 0 0 chr4 171762708 171763001 -30565346 + AluSg SINE Alu 1 293 -17 354 210 32 6 chr4 171763002 171763155 -30565192 + L1MA4A LINE L1 6058 6280 -23 25 0 0 0 chr4 171763183 171763208 -30565139 + AT_rich Low_complexity Low_complexity 1 25 0 1472 267 78 32 chr4 171763738 171764366 -30563981 - L1ME2 LINE L1 -262 6711 6114 276 30 0 0 chr4 171764366 171764399 -30563948 + (TG)n Simple_repeat Simple_repeat 1 33 0 1472 267 78 32 chr4 171764399 171765123 -30563224 - L1ME2 LINE L1 -859 6114 5284 1663 203 0 19 chr4 171765232 171765547 -30562800 + AluJo SINE Alu 2 310 -2 21 36 0 0 chr4 171765582 171765610 -30562737 + AT_rich Low_complexity Low_complexity 1 28 0 417 121 0 0 chr4 171765713 171765779 -30562568 - AluSq SINE Alu -2 309 244 1488 122 0 0 chr4 171765779 171765984 -30562363 - AluSq SINE Alu -108 205 1 399 308 85 27 chr4 171766036 171766146 -30562201 - L1ME2 LINE L1 -4834 2107 2005 2128 193 89 17 chr4 171766146 171766617 -30561730 - MLT1D LTR MaLR 0 505 1 399 308 85 27 chr4 171766617 171767250 -30561097 - L1ME2 LINE L1 -4936 2005 1321 237 108 0 0 chr4 171768128 171768165 -30560182 + (TTA)n Simple_repeat Simple_repeat 1 37 0 2695 88 6 3 chr4 171768167 171768530 -30559817 + THE1B LTR MaLR 1 364 0 293 327 42 38 chr4 171768547 171768810 -30559537 - L1ME2 LINE L1 -6138 285 22 21 0 0 0 chr4 171768879 171768900 -30559447 + AT_rich Low_complexity Low_complexity 1 21 0 33 56 0 0 chr4 171770558 171770612 -30557735 + AT_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr4 171770858 171770887 -30557460 + AT_rich Low_complexity Low_complexity 1 29 0 210 150 0 0 chr4 171771803 171771843 -30556504 + (TATG)n Simple_repeat Simple_repeat 2 41 0 275 103 0 0 chr4 171773802 171773841 -30554506 - MADE1 DNA Mariner -41 39 1 22 0 0 0 chr4 171774058 171774080 -30554267 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 171774310 171774331 -30554016 + AT_rich Low_complexity Low_complexity 1 21 0 280 176 35 3 chr4 171774949 171775022 -30553325 - L1MA10 LINE L1 -2 6323 6102 2815 263 50 68 chr4 171775154 171776413 -30551934 - L1MEc LINE L1 -4581 1565 63 29 0 0 0 chr4 171776813 171776842 -30551505 + AT_rich Low_complexity Low_complexity 1 29 0 2172 107 0 50 chr4 171777399 171777718 -30550629 - AluSq SINE Alu -10 303 1 27 81 0 0 chr4 171778242 171778304 -30550043 + AT_rich Low_complexity Low_complexity 1 62 0 985 243 30 27 chr4 171778349 171778645 -30549702 - AluJo SINE Alu -3 299 3 255 133 0 0 chr4 171778762 171778807 -30549540 + (TA)n Simple_repeat Simple_repeat 2 46 0 27 49 0 0 chr4 171779285 171779326 -30549021 + AT_rich Low_complexity Low_complexity 1 41 0 295 262 49 0 chr4 171780199 171780260 -30548087 + MIR SINE MIR 23 86 -176 27 0 0 0 chr4 171780501 171780528 -30547819 + AT_rich Low_complexity Low_complexity 1 27 0 1439 178 39 105 chr4 171783652 171784062 -30544285 + MLT1B LTR MaLR 1 383 -7 325 283 0 0 chr4 171784603 171784716 -30543631 + A-rich Low_complexity Low_complexity 1 113 0 21 0 0 0 chr4 171784999 171785020 -30543327 + AT_rich Low_complexity Low_complexity 1 21 0 265 380 15 7 chr4 171785271 171785408 -30542939 + MIR SINE MIR 3 140 -122 390 351 82 29 chr4 171785829 171786145 -30542202 - L3 LINE CR1 -13 1564 1232 477 84 0 0 chr4 171786158 171786229 -30542118 + (CA)n Simple_repeat Simple_repeat 2 72 0 1336 268 76 64 chr4 171789210 171789335 -30539012 + MLT1E LTR MaLR 1 123 -470 1753 110 81 4 chr4 171789335 171789607 -30538740 - AluSq SINE Alu -15 298 6 1336 268 76 64 chr4 171789607 171790059 -30538288 + MLT1E LTR MaLR 123 585 -8 208 258 108 42 chr4 171790205 171790325 -30538022 + L2 LINE L2 2730 2857 -457 225 347 100 6 chr4 171790526 171790696 -30537651 + L3 LINE CR1 591 776 -801 204 211 27 197 chr4 171790705 171790852 -30537495 + MIR SINE MIR 113 234 -28 9787 23 3 0 chr4 171791069 171793057 -30535290 + L1PA2 LINE L1 4213 6207 0 2438 56 0 10 chr4 171793072 171793378 -30534969 + AluY SINE Alu 1 303 -8 360 247 0 13 chr4 171793635 171793712 -30534635 + MER5B DNA MER1_type 89 164 -14 2282 60 0 0 chr4 171793737 171794019 -30534328 - AluY SINE Alu -29 282 1 327 247 0 0 chr4 171794468 171794557 -30533790 + L1MB2 LINE L1 6082 6170 -1 2421 65 0 3 chr4 171794569 171794907 -30533440 + AluY SINE Alu 1 337 0 228 35 0 0 chr4 171795565 171795594 -30532753 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 438 216 45 37 chr4 171795767 171795901 -30532446 - L1MC4 LINE L1 -156 7886 7752 616 281 48 24 chr4 171795967 171796216 -30532131 - L1MC4a LINE L1 -326 7482 7228 260 247 37 12 chr4 171796317 171796398 -30531949 + MLT1H LTR MaLR 88 170 -379 519 350 128 2 chr4 171796780 171797203 -30531144 - L1MC4a LINE L1 -781 7027 6552 23 0 0 0 chr4 171797252 171797275 -30531072 + AT_rich Low_complexity Low_complexity 1 23 0 758 125 31 20 chr4 171797281 171797541 -30530806 + GA-rich Low_complexity Low_complexity 1 263 0 2162 89 58 0 chr4 171798003 171798296 -30530051 - AluSx SINE Alu -2 310 1 398 206 0 33 chr4 171801798 171801890 -30526457 - FLAM_A SINE Alu -11 122 34 376 315 25 2 chr4 171802034 171802161 -30526186 + MER5B DNA MER1_type 1 140 -49 1373 142 0 0 chr4 171802196 171802393 -30525954 - AluSg/x SINE Alu -15 297 101 233 250 30 10 chr4 171802837 171802937 -30525410 + (CATATA)n Simple_repeat Simple_repeat 2 103 0 29 0 0 0 chr4 171802972 171803001 -30525346 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr4 171803470 171803504 -30524843 + AT_rich Low_complexity Low_complexity 1 34 0 2079 133 0 7 chr4 171803504 171803806 -30524541 + AluSx SINE Alu 1 300 -12 297 75 0 0 chr4 171804695 171804735 -30523612 + (TA)n Simple_repeat Simple_repeat 1 40 0 329 197 45 8 chr4 171804770 171804902 -30523445 + (TA)n Simple_repeat Simple_repeat 2 138 0 324 289 0 12 chr4 171805128 171805211 -30523136 - MIR3 SINE MIR -31 177 96 26 0 0 0 chr4 171806604 171806630 -30521717 + AT_rich Low_complexity Low_complexity 1 26 0 584 276 59 44 chr4 171806797 171807138 -30521209 + L1ME1 LINE L1 5818 6163 -3 245 178 311 0 chr4 171807159 171807249 -30521098 + L1MA10 LINE L1 6210 6327 -7 25 90 0 0 chr4 171807625 171807692 -30520655 + AT_rich Low_complexity Low_complexity 1 67 0 1245 222 0 0 chr4 171808784 171809005 -30519342 - MER8 DNA MER2_type -18 221 1 1248 296 97 25 chr4 171809007 171809794 -30518553 - L2 LINE L2 -158 3155 2308 2070 116 0 13 chr4 171809798 171810099 -30518248 + AluSp SINE Alu 1 297 -16 774 117 0 0 chr4 171810099 171810219 -30518128 + (TA)n Simple_repeat Simple_repeat 2 121 0 23 78 0 0 chr4 171810358 171810409 -30517938 + AT_rich Low_complexity Low_complexity 1 51 0 302 176 14 0 chr4 171810738 171810812 -30517535 - L1MA7 LINE L1 -3 6288 6214 5955 98 4 8 chr4 171811132 171812354 -30515993 - L1PA14 LINE L1 -2 6159 4921 411 350 80 15 chr4 171812463 171812663 -30515684 - MIR SINE MIR -27 235 23 22 0 0 0 chr4 171812917 171812939 -30515408 + AT_rich Low_complexity Low_complexity 1 22 0 435 319 44 6 chr4 171813331 171813491 -30514856 - MIR SINE MIR -64 198 33 2506 53 0 0 chr4 171814839 171815141 -30513206 - AluY SINE Alu -9 302 1 1769 216 58 22 chr4 171815387 171815883 -30512464 + MER67D LTR ERV1 1 514 0 383 0 21 0 chr4 171816084 171816131 -30512216 + (CA)n Simple_repeat Simple_repeat 2 49 0 1447 114 20 35 chr4 171816131 171816385 -30511962 - MER4D LTR ERV1 -620 252 3 21 57 0 0 chr4 171817509 171817544 -30510803 + AT_rich Low_complexity Low_complexity 1 35 0 2221 91 0 23 chr4 171817546 171817854 -30510493 + AluSx SINE Alu 1 301 -11 209 195 24 0 chr4 171818107 171818148 -30510199 + GA-rich Low_complexity Low_complexity 3 44 0 196 369 78 0 chr4 171818419 171818522 -30509825 - MIR SINE MIR -29 233 123 282 95 0 0 chr4 171818534 171818576 -30509771 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 229 382 33 17 chr4 171818625 171818816 -30509531 + MIR SINE MIR 20 212 -50 261 0 0 0 chr4 171818836 171818865 -30509482 + (TG)n Simple_repeat Simple_repeat 2 30 0 2266 88 0 0 chr4 171820100 171820394 -30507953 + AluY SINE Alu 1 294 -17 272 274 137 16 chr4 171820481 171820605 -30507742 - MIR SINE MIR -11 251 113 191 122 0 24 chr4 171820736 171820777 -30507570 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 391 326 138 20 chr4 171821351 171821655 -30506692 + L2 LINE L2 2262 2601 -713 526 345 114 45 chr4 171821659 171822108 -30506239 + L2 LINE L2 2824 3303 -10 254 350 47 56 chr4 171822323 171822537 -30505810 + L2 LINE L2 2866 3077 -195 289 315 128 13 chr4 171822948 171823097 -30505250 - MIR SINE MIR -31 231 66 21 0 0 0 chr4 171823334 171823355 -30504992 + AT_rich Low_complexity Low_complexity 1 21 0 502 281 86 29 chr4 171824946 171825259 -30503088 + L1ME3A LINE L1 5743 6058 -106 21 0 0 0 chr4 171826200 171826221 -30502126 + AT_rich Low_complexity Low_complexity 1 21 0 2252 222 47 20 chr4 171827684 171828257 -30500090 - L1MB7 LINE L1 -21 6163 5584 2249 105 0 10 chr4 171828728 171829034 -30499313 - AluSq SINE Alu -10 303 1 1891 142 10 7 chr4 171830139 171830435 -30497912 + AluSx SINE Alu 1 297 -15 332 158 0 0 chr4 171834193 171834250 -30494097 - L1MA8 LINE L1 -191 6100 6044 23 33 0 0 chr4 171834507 171834537 -30493810 + AT_rich Low_complexity Low_complexity 1 30 0 481 345 76 14 chr4 171834629 171834983 -30493364 + L1MEd LINE L1 465 840 -5279 580 339 83 50 chr4 171835057 171835825 -30492522 + L1M4 LINE L1 3370 4163 -1983 358 322 88 19 chr4 171837444 171837649 -30490698 + MER115 DNA AcHobo 29 247 -446 264 59 0 0 chr4 171839242 171839276 -30489071 + (TC)n Simple_repeat Simple_repeat 1 34 0 258 32 0 0 chr4 171839276 171839307 -30489040 + (TG)n Simple_repeat Simple_repeat 2 32 0 230 196 18 0 chr4 171839346 171839402 -30488945 + (TA)n Simple_repeat Simple_repeat 2 58 0 186 103 0 0 chr4 171839443 171839472 -30488875 + (TA)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr4 171839928 171839949 -30488398 + AT_rich Low_complexity Low_complexity 1 21 0 411 340 33 28 chr4 171839952 171840167 -30488180 - MIR SINE MIR -10 252 37 216 327 139 12 chr4 171840858 171841023 -30487324 + MIR SINE MIR 71 256 -6 1758 145 40 57 chr4 171841085 171841316 -30487031 + L1PB4 LINE L1 5791 6015 -141 2106 120 3 3 chr4 171841316 171841616 -30486731 + AluSg SINE Alu 1 300 -10 1758 145 40 57 chr4 171841616 171841756 -30486591 + L1PB4 LINE L1 6015 6156 0 23 33 0 0 chr4 171841935 171841965 -30486382 + AT_rich Low_complexity Low_complexity 1 30 0 1338 220 7 23 chr4 171842284 171842589 -30485758 + L1PB4 LINE L1 5848 6147 -9 286 333 61 0 chr4 171842715 171842829 -30485518 + L2 LINE L2 3191 3311 -2 222 37 0 0 chr4 171844156 171844183 -30484164 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1182 198 68 27 chr4 171844185 171844448 -30483899 - AluJo SINE Alu -30 282 9 26 88 0 0 chr4 171845373 171845441 -30482906 + AT_rich Low_complexity Low_complexity 1 68 0 2110 116 3 0 chr4 171845805 171846099 -30482248 - AluSq SINE Alu -4 309 15 21 57 0 0 chr4 171847376 171847411 -30480936 + AT_rich Low_complexity Low_complexity 1 35 0 1981 132 0 0 chr4 171847799 171848079 -30480268 + AluSx SINE Alu 1 280 -32 195 42 0 0 chr4 171848079 171848103 -30480244 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 204 40 0 0 chr4 171848647 171848672 -30479675 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 285 29 0 0 chr4 171848671 171848705 -30479642 + (TG)n Simple_repeat Simple_repeat 2 35 0 1589 143 78 34 chr4 171849406 171849573 -30478774 - AluSx SINE Alu -4 308 121 183 42 0 0 chr4 171849573 171849597 -30478750 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1589 143 78 34 chr4 171849597 171849722 -30478625 - AluSx SINE Alu -191 121 3 193 343 0 15 chr4 171849801 171849868 -30478479 + MIR SINE MIR 178 243 -19 21 57 0 0 chr4 171850212 171850247 -30478100 + AT_rich Low_complexity Low_complexity 1 35 0 2065 108 0 10 chr4 171851160 171851456 -30476891 + AluSc SINE Alu 1 293 -16 1680 187 0 11 chr4 171853312 171853596 -30474751 - AluJb SINE Alu -21 291 11 243 114 0 0 chr4 171854629 171854673 -30473674 + (TTCA)n Simple_repeat Simple_repeat 3 46 0 394 248 9 29 chr4 171854675 171854780 -30473567 - L2 LINE L2 -9 3304 3202 981 324 106 19 chr4 171854876 171855437 -30472910 - L2 LINE L2 -283 3030 2420 1006 290 108 16 chr4 171855450 171855884 -30472463 + L2 LINE L2 2004 2477 -837 278 328 109 77 chr4 171855920 171857026 -30471321 - L2 LINE L2 -962 2352 1211 26 30 0 0 chr4 171859512 171859545 -30468802 + AT_rich Low_complexity Low_complexity 1 33 0 223 244 0 0 chr4 171859939 171859984 -30468363 + (CA)n Simple_repeat Simple_repeat 1 45 0 376 304 165 21 chr4 171860240 171860483 -30467864 + L2 LINE L2 3009 3286 -27 207 0 0 0 chr4 171860707 171860730 -30467617 + (A)n Simple_repeat Simple_repeat 1 23 0 2131 120 3 0 chr4 171861373 171861674 -30466673 + AluSp SINE Alu 1 302 -11 2439 28 0 0 chr4 171862262 171862548 -30465799 + L1PA2 LINE L1 5804 6089 -66 14222 152 14 17 chr4 171862808 171864991 -30463356 - Tigger1 DNA MER2_type 0 2418 240 433 106 11 53 chr4 171864991 171865085 -30463262 + L1MA4A LINE L1 6210 6299 -4 14222 152 14 17 chr4 171865085 171865325 -30463022 - Tigger1 DNA MER2_type -2178 240 1 25 0 0 0 chr4 171865364 171865389 -30462958 + AT_rich Low_complexity Low_complexity 1 25 0 205 401 42 53 chr4 171865717 171865981 -30462366 - L2 LINE L2 -36 3236 2976 2113 112 17 0 chr4 171867112 171867408 -30460939 + AluSq SINE Alu 2 302 -11 1894 142 0 22 chr4 171867608 171867924 -30460423 + AluSx SINE Alu 1 309 -3 285 29 0 0 chr4 171868156 171868190 -30460157 + (CA)n Simple_repeat Simple_repeat 2 35 0 225 340 0 21 chr4 171868475 171868572 -30459775 + L1ME LINE L1 673 767 -5763 333 278 106 89 chr4 171869310 171869746 -30458601 + L1ME LINE L1 1228 1736 -1165 28 79 0 0 chr4 171869915 171869978 -30458369 + AT_rich Low_complexity Low_complexity 1 63 0 43 0 0 0 chr4 171870053 171870096 -30458251 + AT_rich Low_complexity Low_complexity 1 43 0 818 289 104 73 chr4 171870392 171871814 -30456533 + L1ME LINE L1 2397 3853 -2687 2880 196 31 21 chr4 171872758 171873430 -30454917 + MER67C LTR ERV1 1 679 -31 438 67 40 0 chr4 171873696 171873771 -30454576 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 335 305 34 6 chr4 171874022 171874199 -30454148 + L1ME LINE L1 5256 5437 -1103 263 211 62 31 chr4 171874322 171874450 -30453897 + L1ME LINE L1 5589 5720 -820 228 204 0 0 chr4 171874647 171874691 -30453656 + L1ME LINE L1 6064 6107 -457 21 57 0 0 chr4 171874894 171874929 -30453418 + AT_rich Low_complexity Low_complexity 1 35 0 2070 130 0 0 chr4 171875866 171876175 -30452172 + AluSx SINE Alu 3 311 0 2334 92 0 7 chr4 171876626 171876930 -30451417 - AluSx SINE Alu -9 303 2 274 288 41 0 chr4 171878107 171878180 -30450167 - MER5A DNA MER1_type -6 183 108 26 50 0 0 chr4 171878675 171878715 -30449632 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr4 171878984 171879007 -30449340 + AT_rich Low_complexity Low_complexity 1 23 0 362 193 23 11 chr4 171879316 171879404 -30448943 + MLT1C LTR MaLR 1 89 -378 742 274 17 6 chr4 171879785 171879960 -30448387 - MER45A DNA AcHobo 0 178 2 26 74 0 0 chr4 171880303 171880357 -30447990 + AT_rich Low_complexity Low_complexity 1 54 0 38 0 0 0 chr4 171880826 171880864 -30447483 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr4 171880983 171881013 -30447334 + AT_rich Low_complexity Low_complexity 1 30 0 716 279 100 50 chr4 171882528 171882928 -30445419 + MLT2B1 LTR ERVL 1 466 -54 524 178 34 8 chr4 171882939 171883057 -30445290 - L1MA9 LINE L1 -231 6081 5961 2224 197 53 27 chr4 171883062 171884015 -30444332 + L1M2 LINE L1 4752 5744 -568 708 263 58 27 chr4 171884026 171884402 -30443945 - L1MEc LINE L1 -3876 2520 2133 327 200 33 0 chr4 171884387 171884477 -30443870 - L1MA9 LINE L1 -2642 5400 5308 * 809 114 8 0 chr4 171884478 171884610 -30443737 + (TTC)n Simple_repeat Simple_repeat 1 133 0 4698 60 7 2 chr4 171884621 171885233 -30443114 - L1PA8 LINE L1 -4 6168 5554 1470 161 7 64 chr4 171885237 171885555 -30442792 - AluJb SINE Alu 0 301 1 1040 73 0 0 chr4 171885588 171885724 -30442623 - L1P4 LINE L1 -415 5753 5618 * 8721 131 10 3 chr4 171885722 171887362 -30440985 + L1P4 LINE L1 3954 5607 -524 5015 189 37 13 chr4 171887453 171888867 -30439480 - L1MA5 LINE L1 -2 6298 4840 3170 215 16 21 chr4 171888868 171890148 -30438199 + L1M2 LINE L1 2363 3635 -3213 884 227 43 92 chr4 171890897 171891355 -30436992 + MLT2D LTR ERVL 1 480 -40 201 225 0 0 chr4 171891443 171891483 -30436864 + (TG)n Simple_repeat Simple_repeat 1 40 0 378 355 89 15 chr4 171892219 171892422 -30435925 - L3 LINE CR1 -1180 397 180 787 111 0 0 chr4 171892840 171892957 -30435390 - L1MA8 LINE L1 -7 6284 6168 1379 146 23 39 chr4 171892957 171893217 -30435130 - Tigger5 DNA MER2_type -1 2322 2067 258 236 64 73 chr4 171893457 171893567 -30434780 + MLT2E LTR ERVL 44 152 -476 705 230 91 43 chr4 171893771 171893980 -30434367 - LTR40b LTR ERVL -11 451 233 598 291 51 15 chr4 171894058 171894254 -30434093 + LTR16A LTR ERVL 239 441 -9 804 263 20 66 chr4 171894448 171894749 -30433598 + LTR40a LTR ERVL 1 287 -232 1318 217 92 24 chr4 171895238 171895607 -30432740 - MSTD LTR MaLR -2 394 1 1125 329 68 29 chr4 171896229 171896962 -30431385 + ERVL LTR ERVL 4263 5024 -740 26 30 0 0 chr4 171899666 171899699 -30428648 + AT_rich Low_complexity Low_complexity 1 33 0 234 0 0 0 chr4 171899996 171900022 -30428325 + (TC)n Simple_repeat Simple_repeat 1 26 0 238 289 67 0 chr4 171900162 171900266 -30428081 + MER102b DNA MER1_type 43 153 -188 234 295 0 0 chr4 171900410 171900488 -30427859 - L1M4 LINE L1 -2695 3451 3374 275 355 11 0 chr4 171900792 171900885 -30427462 + MER102b DNA MER1_type 247 340 -1 377 263 112 40 chr4 171901864 171902088 -30426259 + L1M4 LINE L1 4329 4568 -1578 32 26 0 0 chr4 171902285 171902324 -30426023 + AT_rich Low_complexity Low_complexity 1 39 0 3499 77 0 0 chr4 171902669 171903126 -30425221 + L1PA7 LINE L1 5686 6142 -12 32 57 0 0 chr4 171903632 171903685 -30424662 + AT_rich Low_complexity Low_complexity 1 53 0 190 382 27 38 chr4 171903895 171904081 -30424266 + MIR3 SINE MIR 20 203 -5 21 0 0 0 chr4 171904300 171904321 -30424026 + AT_rich Low_complexity Low_complexity 1 21 0 243 295 21 11 chr4 171904487 171904582 -30423765 + CT-rich Low_complexity Low_complexity 4 99 0 28 0 0 0 chr4 171906415 171906443 -30421904 + AT_rich Low_complexity Low_complexity 1 28 0 333 208 57 75 chr4 171907048 171907102 -30421245 - MER5A DNA MER1_type -85 104 51 1481 205 66 24 chr4 171907102 171907482 -30420865 + MSTD LTR MaLR 1 396 0 333 208 57 75 chr4 171907482 171907533 -30420814 - MER5A DNA MER1_type -138 51 1 2244 110 7 0 chr4 171907555 171907865 -30420482 + AluSx SINE Alu 1 312 0 23 33 0 0 chr4 171908123 171908153 -30420194 + AT_rich Low_complexity Low_complexity 1 30 0 2451 169 28 43 chr4 171908153 171908741 -30419606 + L1P4 LINE L1 4848 5422 -739 1854 129 7 0 chr4 171908741 171909012 -30419335 + AluSx SINE Alu 1 273 -39 2451 169 28 43 chr4 171909012 171909050 -30419297 + L1P4 LINE L1 5422 5459 -702 203 356 123 20 chr4 171909289 171909435 -30418912 + L2 LINE L2 2950 3110 -162 208 221 76 0 chr4 171910058 171910216 -30418131 + (TA)n Simple_repeat Simple_repeat 1 170 0 382 309 29 11 chr4 171910305 171910480 -30417867 - MER5B DNA MER1_type 0 178 1 2236 104 3 0 chr4 171910871 171911178 -30417169 + AluSg SINE Alu 1 308 -2 21 0 0 0 chr4 171911794 171911815 -30416532 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 171912209 171912230 -30416117 + AT_rich Low_complexity Low_complexity 1 21 0 834 273 84 68 chr4 171912265 171912309 -30416038 + L1ME3 LINE L1 5554 5596 -566 1636 114 4 4 chr4 171912309 171912537 -30415810 + AluSc SINE Alu 1 228 -81 834 273 84 68 chr4 171912537 171913085 -30415262 + L1ME3 LINE L1 5596 6156 -6 441 179 187 0 chr4 171913509 171913632 -30414715 + MER103 DNA DNA 3 148 -18 245 365 64 19 chr4 171914149 171914305 -30414042 + MIR3 SINE MIR 39 201 -7 30 59 0 0 chr4 171914583 171914634 -30413713 + AT_rich Low_complexity Low_complexity 1 51 0 221 276 17 0 chr4 171915511 171915569 -30412778 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 2016 249 40 50 chr4 171915790 171916690 -30411657 + L1ME2 LINE L1 5257 6147 -17 1476 247 12 29 chr4 171916715 171917201 -30411146 + L1MC1 LINE L1 4580 5057 -1089 1026 167 29 0 chr4 171917220 171917424 -30410923 - L1MA4 LINE L1 -4 6296 6087 3216 176 23 13 chr4 171917672 171918481 -30409866 + L1MC1 LINE L1 5039 5854 -479 1224 68 0 0 chr4 171918481 171918629 -30409718 + AluY SINE Alu 1 148 -163 1713 165 175 4 chr4 171918639 171919043 -30409304 + L1MC1 LINE L1 5861 6328 -5 234 269 0 0 chr4 171919544 171919596 -30408751 + L2 LINE L2 3262 3313 0 241 318 28 37 chr4 171919679 171919786 -30408561 + MIR SINE MIR 33 138 -70 42 20 0 0 chr4 171920765 171920814 -30407533 + AT_rich Low_complexity Low_complexity 1 49 0 290 162 14 0 chr4 171920914 171920988 -30407359 + (TA)n Simple_repeat Simple_repeat 1 75 0 945 235 11 70 chr4 171921661 171921933 -30406414 + LTR40a LTR ERVL 1 256 -263 5613 71 12 0 chr4 171921934 171922663 -30405684 + LTR17 LTR ERV1 33 770 -10 1054 249 80 34 chr4 171922688 171923013 -30405334 + LTR40b LTR ERVL 123 462 0 1294 124 73 48 chr4 171923273 171923546 -30404801 - L1MA9 LINE L1 -5 6307 6028 29 60 0 0 chr4 171923788 171923838 -30404509 + AT_rich Low_complexity Low_complexity 1 50 0 195 362 0 14 chr4 171924857 171924926 -30403421 + MIR3 SINE MIR 5 72 -136 291 303 33 100 chr4 171924935 171925295 -30403052 - MLT1I LTR MaLR -12 397 62 322 384 44 15 chr4 171925393 171925599 -30402748 + MIR SINE MIR 41 252 -10 325 293 36 21 chr4 171926040 171926180 -30402167 + MIR SINE MIR 73 214 -48 27 0 0 0 chr4 171926877 171926904 -30401443 + AT_rich Low_complexity Low_complexity 1 27 0 27 87 0 0 chr4 171926935 171927004 -30401343 + AT_rich Low_complexity Low_complexity 1 69 0 282 300 184 37 chr4 171927053 171927243 -30401104 - L2 LINE L2 -2 3311 3094 205 299 91 0 chr4 171927323 171927400 -30400947 - L2 LINE L2 -3116 198 115 559 283 62 0 chr4 171928398 171928575 -30399772 + MIR SINE MIR 72 259 -3 27 49 0 0 chr4 171928872 171928913 -30399434 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr4 171929959 171929980 -30398367 + AT_rich Low_complexity Low_complexity 1 21 0 982 235 129 12 chr4 171930487 171930742 -30397605 - AluJb SINE Alu -15 287 3 369 0 0 0 chr4 171930974 171931015 -30397332 + (CA)n Simple_repeat Simple_repeat 1 41 0 192 40 0 0 chr4 171931064 171931089 -30397258 + (TTG)n Simple_repeat Simple_repeat 2 26 0 529 356 124 28 chr4 171931433 171931941 -30396406 + L2 LINE L2 2421 2977 -337 215 200 0 18 chr4 171932664 171932719 -30395628 + CT-rich Low_complexity Low_complexity 2 55 0 351 0 0 0 chr4 171932729 171932768 -30395579 + (CA)n Simple_repeat Simple_repeat 2 40 0 536 264 108 29 chr4 171934375 171934652 -30393695 - LTR43 LTR ERV1 -124 478 180 547 307 110 11 chr4 171935511 171935775 -30392572 - L2 LINE L2 -900 2414 2125 294 355 112 0 chr4 171935882 171936051 -30392296 + L2 LINE L2 3125 3312 -1 2228 43 7 4 chr4 171936469 171936746 -30391601 - AluY SINE Alu -18 293 16 1202 194 0 57 chr4 171937181 171937444 -30390903 + AluJo SINE Alu 48 295 -17 1647 140 18 30 chr4 171937733 171938068 -30390279 - L1MA5A LINE L1 -6 6291 5961 259 316 41 0 chr4 171938664 171938762 -30389585 - MIR3 SINE MIR -2 206 105 340 258 0 15 chr4 171939267 171939399 -30388948 + (TA)n Simple_repeat Simple_repeat 1 130 0 2381 165 9 23 chr4 171939932 171940368 -30387979 + Tigger2a DNA MER2_type 4 433 -1 2330 72 0 13 chr4 171942896 171943203 -30385144 - AluY SINE Alu -8 303 1 35 71 0 0 chr4 171943374 171943444 -30384903 + AT_rich Low_complexity Low_complexity 1 70 0 21 89 0 0 chr4 171943514 171943570 -30384777 + AT_rich Low_complexity Low_complexity 1 56 0 297 294 89 0 chr4 171943692 171943838 -30384509 - L1M4 LINE L1 -1295 4851 4693 21 0 0 0 chr4 171945238 171945259 -30383088 + AT_rich Low_complexity Low_complexity 1 21 0 1173 140 16 0 chr4 171945338 171945524 -30382823 + AluY SINE Alu 1 189 -122 239 288 100 12 chr4 171945624 171945794 -30382553 - L1M4 LINE L1 -1531 4615 4431 23 0 0 0 chr4 171946020 171946043 -30382304 + AT_rich Low_complexity Low_complexity 1 23 0 707 103 8 8 chr4 171946736 171946853 -30381494 + AluY SINE Alu 182 298 -13 1373 98 0 14 chr4 171947208 171947423 -30380924 - pTR5 LTR ERV1 -2046 392 181 226 274 51 43 chr4 171947774 171947891 -30380456 + MER5A DNA MER1_type 1 118 -71 419 299 68 41 chr4 171948242 171948463 -30379884 + L1ME LINE L1 5378 5604 -517 191 36 36 0 chr4 171948557 171948585 -30379762 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 190 339 77 0 chr4 171948639 171948704 -30379643 - L2 LINE L2 -43 3270 3201 2292 92 3 0 chr4 171948786 171949081 -30379266 + AluSp SINE Alu 1 296 -17 195 42 0 0 chr4 171950657 171950681 -30377666 + (T)n Simple_repeat Simple_repeat 1 24 0 1097 222 60 4 chr4 171951320 171951568 -30376779 + MLT1C LTR MaLR 206 467 0 262 197 53 26 chr4 171951873 171951949 -30376398 - LTR33 LTR ERVL -442 79 2 358 392 15 0 chr4 171952717 171952921 -30375426 + L2 LINE L2 2552 2758 -556 538 190 10 0 chr4 171952928 171953028 -30375319 + MER94 DNA DNA 5 105 -29 366 23 0 0 chr4 171953525 171953568 -30374779 + (CA)n Simple_repeat Simple_repeat 2 44 0 968 63 0 0 chr4 171953671 171953797 -30374550 - AluSg SINE Alu -184 126 1 2357 208 105 9 chr4 171954088 171954718 -30373629 - Tigger6a DNA MER2_type 0 1083 394 5436 115 15 0 chr4 171954718 171955518 -30372829 - L1PA13 LINE L1 -16 6147 5336 5960 117 18 0 chr4 171955518 171956451 -30371896 + L1PB1 LINE L1 5202 6151 0 568 94 23 8 chr4 171956458 171956605 -30371742 - L1PA13 LINE L1 -798 5348 5110 2619 141 18 0 chr4 171956605 171957046 -30371301 + L1PA13 LINE L1 4646 5094 -1052 1958 221 17 2 chr4 171957055 171957472 -30370875 - Tigger6a DNA MER2_type -660 423 1 21 0 0 0 chr4 171957710 171957731 -30370616 + AT_rich Low_complexity Low_complexity 1 21 0 448 206 0 92 chr4 171957773 171957904 -30370443 - L1 LINE L1 -3451 4114 3996 29 47 0 0 chr4 171958271 171958314 -30370033 + AT_rich Low_complexity Low_complexity 1 43 0 1606 194 54 11 chr4 171960272 171960622 -30367725 + MLT1A1 LTR MaLR 1 365 0 2199 83 0 35 chr4 171960900 171961212 -30367135 - AluSq SINE Alu -12 301 1 1106 247 67 36 chr4 171962638 171962800 -30365547 - L1 LINE L1 -3597 3968 3813 2148 109 0 7 chr4 171962800 171963104 -30365243 - AluSx SINE Alu -10 302 1 1106 247 67 36 chr4 171963104 171963594 -30364753 - L1 LINE L1 -3752 3813 3295 10863 212 30 8 chr4 171963679 171964250 -30364097 + L1M2 LINE L1 2659 3216 -3025 2076 118 0 0 chr4 171964250 171964530 -30363817 + AluSx SINE Alu 17 296 -16 10863 212 30 8 chr4 171964530 171966738 -30361609 + L1M2 LINE L1 3216 5497 -744 21 0 0 0 chr4 171966740 171966761 -30361586 + AT_rich Low_complexity Low_complexity 1 21 0 267 253 200 0 chr4 171967269 171967364 -30360983 + LTR50 LTR ERVL 142 255 -540 534 301 95 46 chr4 171967518 171967867 -30360480 + HAL1 LINE L1 2142 2507 0 403 304 89 0 chr4 171968091 171968259 -30360088 + HsTC2 DNA Tc2 53 235 -1663 886 72 0 0 chr4 171969360 171969485 -30358862 - AluY SINE Alu -5 306 182 1833 40 0 9 chr4 171969485 171969709 -30358638 - AluY SINE Alu -89 222 1 21 0 0 0 chr4 171969832 171969853 -30358494 + AT_rich Low_complexity Low_complexity 1 21 0 230 322 221 7 chr4 171969857 171970006 -30358341 - L3 LINE CR1 -11 1566 1386 22 0 0 0 chr4 171970944 171970966 -30357381 + AT_rich Low_complexity Low_complexity 1 22 0 359 247 123 6 chr4 171971002 171971132 -30357215 - MIR SINE MIR -39 169 25 210 250 0 0 chr4 171971328 171971372 -30356975 + (TATG)n Simple_repeat Simple_repeat 1 44 0 534 270 53 40 chr4 171971392 171971698 -30356649 - MER93a LTR ERV1 -10 424 102 339 25 0 0 chr4 171971732 171971772 -30356575 + (CA)n Simple_repeat Simple_repeat 2 41 0 183 80 0 0 chr4 171972042 171972067 -30356280 + (TA)n Simple_repeat Simple_repeat 2 26 0 24 32 0 0 chr4 171972450 171972481 -30355866 + AT_rich Low_complexity Low_complexity 1 31 0 535 362 37 0 chr4 171972809 171973055 -30355292 - L2 LINE L2 -239 3074 2820 1161 70 0 13 chr4 171973081 171973239 -30355108 - L1PA8 LINE L1 -6 6166 6011 647 241 41 31 chr4 171973267 171973557 -30354790 - L1ME2 LINE L1 -221 5943 5651 2093 194 28 34 chr4 171973566 171974035 -30354312 - MLT1C LTR MaLR 0 467 2 252 0 0 0 chr4 171974076 171974104 -30354243 + (TG)n Simple_repeat Simple_repeat 2 29 0 542 280 51 14 chr4 171974195 171974488 -30353859 - L1ME2 LINE L1 -1635 4511 4208 437 301 5 31 chr4 171974532 171974728 -30353619 - L1ME2 LINE L1 -2032 4114 3924 465 341 44 22 chr4 171974740 171975104 -30353243 - L1ME2 LINE L1 -2327 3819 3448 1924 241 39 26 chr4 171975238 171975654 -30352693 - HsTC2 DNA Tc2 -1036 862 436 2394 71 0 7 chr4 171975654 171975962 -30352385 - AluY SINE Alu -5 306 1 1924 241 39 26 chr4 171975962 171976089 -30352258 - HsTC2 DNA Tc2 -1462 436 312 214 245 0 20 chr4 171976478 171976527 -30351820 - MIR SINE MIR -78 130 83 22 35 0 0 chr4 171976632 171976661 -30351686 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 171977147 171977168 -30351179 + AT_rich Low_complexity Low_complexity 1 21 0 320 376 17 6 chr4 171977592 171977773 -30350574 - MER5A DNA MER1_type -6 183 1 1598 52 0 5 chr4 171978121 171978334 -30350013 + pTR5 LTR ERV1 181 392 -2046 1703 49 0 31 chr4 171978689 171978913 -30349434 - AluY SINE Alu -13 298 82 218 345 36 0 chr4 171979058 171979168 -30349179 - MIR3 SINE MIR -85 123 10 214 260 0 0 chr4 171979378 171979428 -30348919 + L2 LINE L2 3264 3313 0 191 301 158 41 chr4 171979734 171979880 -30348467 + MIR3 SINE MIR 46 208 0 28 29 0 0 chr4 171981001 171981036 -30347311 + AT_rich Low_complexity Low_complexity 1 35 0 250 293 76 38 chr4 171981082 171981239 -30347108 - L1ME4a LINE L1 -4 6117 5955 391 252 36 18 chr4 171981422 171981533 -30346814 + L2 LINE L2 3199 3311 -2 23 78 0 0 chr4 171981910 171981961 -30346386 + AT_rich Low_complexity Low_complexity 1 51 0 417 213 118 7 chr4 171982526 171982662 -30345685 + MER103 DNA DNA 7 157 -9 341 274 101 65 chr4 171984081 171984808 -30343539 + L1ME3A LINE L1 3852 4620 -1526 785 231 24 24 chr4 171984833 171985045 -30343302 - L1PB4 LINE L1 0 6156 5945 458 369 73 24 chr4 171985045 171985633 -30342714 + L1ME3A LINE L1 4605 5221 -925 905 298 65 41 chr4 171985670 171986207 -30342140 + L1ME3A LINE L1 5288 5837 -333 2291 304 47 55 chr4 171986231 171986635 -30341712 - L2 LINE L2 -473 2841 2435 1827 177 42 65 chr4 171986635 171986852 -30341495 + MSTB LTR MaLR 3 207 -219 2662 29 3 0 chr4 171986852 171987160 -30341187 - AluY SINE Alu -2 309 1 1827 177 42 65 chr4 171987160 171987376 -30340971 + MSTB LTR MaLR 207 426 0 2291 304 47 55 chr4 171987376 171987712 -30340635 - L2 LINE L2 -879 2435 2098 598 253 177 0 chr4 171987712 171987898 -30340449 + MER20 DNA MER1_type 1 219 0 2291 304 47 55 chr4 171987898 171988449 -30339898 - L2 LINE L2 -1216 2098 1559 420 314 117 16 chr4 171988522 171988710 -30339637 + MIR SINE MIR 44 250 -12 245 175 35 0 chr4 171989062 171989119 -30339228 + (TTTAA)n Simple_repeat Simple_repeat 4 62 0 288 0 0 0 chr4 171989463 171989495 -30338852 + (CA)n Simple_repeat Simple_repeat 2 33 0 378 42 0 0 chr4 171989531 171989579 -30338768 + (CA)n Simple_repeat Simple_repeat 2 49 0 343 244 40 34 chr4 171990739 171990915 -30337432 + (CATATA)n Simple_repeat Simple_repeat 3 179 0 545 300 89 69 chr4 171991152 171991545 -30336802 - MLT1I LTR MaLR -6 403 3 264 158 0 0 chr4 171991959 171992016 -30336331 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 821 179 10 65 chr4 171992189 171992390 -30335957 - L1MC3 LINE L1 -13 7772 7583 380 81 0 32 chr4 171992491 171992553 -30335794 + (TTCCC)n Simple_repeat Simple_repeat 5 64 0 233 119 24 0 chr4 171992554 171992596 -30335751 + CT-rich Low_complexity Low_complexity 1 43 0 1936 135 20 3 chr4 171992596 171992899 -30335448 - AluSx SINE Alu -2 310 3 290 260 71 24 chr4 171992900 171993027 -30335320 - L1MC3 LINE L1 -212 7573 7441 1913 102 35 7 chr4 171993550 171993833 -30334514 + AluSq SINE Alu 1 291 -22 539 142 28 19 chr4 171995047 171995153 -30333194 + FLAM_C SINE Alu 2 108 -35 30 0 0 0 chr4 171995180 171995210 -30333137 + AT_rich Low_complexity Low_complexity 1 30 0 957 174 4 106 chr4 171995230 171995495 -30332852 + AluJo SINE Alu 68 305 -7 216 184 0 0 chr4 171995513 171995562 -30332785 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 248 343 29 29 chr4 171996492 171996629 -30331718 + L1MC4 LINE L1 5505 5641 -2167 472 286 108 37 chr4 171999147 171999388 -30328959 + L2 LINE L2 3052 3309 -4 549 93 70 0 chr4 171999407 171999536 -30328811 + (TA)n Simple_repeat Simple_repeat 1 138 0 304 283 11 11 chr4 171999536 171999628 -30328719 + L1MC4 LINE L1 6612 6703 -1339 2081 120 0 3 chr4 171999635 171999926 -30328421 - AluSq SINE Alu -23 290 1 844 315 104 26 chr4 172000874 172001375 -30326972 + MLT1E LTR MaLR 54 593 0 4237 148 3 0 chr4 172001945 172002634 -30325713 + L1PA16 LINE L1 5469 6159 -7 344 332 97 23 chr4 172002986 172003245 -30325102 - L2 LINE L2 -861 2453 2176 240 253 0 0 chr4 172005808 172005883 -30322464 + (TA)n Simple_repeat Simple_repeat 1 75 0 21 57 0 0 chr4 172006441 172006476 -30321871 + AT_rich Low_complexity Low_complexity 1 35 0 183 42 0 0 chr4 172006543 172006567 -30321780 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 24 32 0 0 chr4 172006775 172006806 -30321541 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 172007501 172007529 -30320818 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr4 172007985 172008019 -30320328 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr4 172009048 172009069 -30319278 + AT_rich Low_complexity Low_complexity 1 21 0 312 27 0 0 chr4 172009163 172009200 -30319147 + (TAA)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr4 172010538 172010559 -30317788 + AT_rich Low_complexity Low_complexity 1 21 0 201 147 0 0 chr4 172012035 172012069 -30316278 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 282 347 48 7 chr4 172012137 172012284 -30316063 + MIR3 SINE MIR 51 203 -5 23 0 0 0 chr4 172012298 172012321 -30316026 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 172012354 172012376 -30315971 + AT_rich Low_complexity Low_complexity 1 22 0 396 0 0 0 chr4 172012425 172012469 -30315878 + (TA)n Simple_repeat Simple_repeat 2 45 0 264 100 0 0 chr4 172012711 172012751 -30315596 + (TG)n Simple_repeat Simple_repeat 1 40 0 24 77 0 0 chr4 172014095 172014147 -30314200 + AT_rich Low_complexity Low_complexity 1 52 0 2286 60 3 0 chr4 172015211 172015518 -30312829 - AluY SINE Alu 0 308 1 739 352 25 12 chr4 172016395 172016716 -30311631 + MLT1I LTR MaLR 47 371 -38 3248 117 8 2 chr4 172017802 172018165 -30310182 - L1PB1 LINE L1 -2 6149 5781 423 0 0 0 chr4 172018165 172018212 -30310135 + (TG)n Simple_repeat Simple_repeat 2 48 0 3248 117 8 2 chr4 172018212 172018342 -30310005 - L1PB1 LINE L1 -370 5781 5653 272 349 86 41 chr4 172018375 172018486 -30309861 + L2 LINE L2 3033 3138 -175 571 79 0 0 chr4 172018486 172018562 -30309785 + MADE1 DNA Mariner 4 79 -1 272 349 86 41 chr4 172018562 172018719 -30309628 + L2 LINE L2 3138 3313 0 266 273 151 36 chr4 172019055 172019194 -30309153 + L2 LINE L2 3159 3313 0 32 26 0 0 chr4 172019388 172019427 -30308920 + AT_rich Low_complexity Low_complexity 1 39 0 227 91 0 0 chr4 172019623 172019656 -30308691 - MADE1 DNA Mariner -1 79 47 223 325 38 0 chr4 172020859 172020939 -30307408 - L2 LINE L2 -1 3312 3230 1813 187 3 0 chr4 172020961 172021282 -30307065 + L1MB2 LINE L1 5535 5856 -315 26 50 0 0 chr4 172071319 172071359 -30256988 + AT_rich Low_complexity Low_complexity 1 40 0 424 256 11 0 chr4 172071550 172071640 -30256707 - MLT-int LTR MaLR -1266 469 379 410 167 0 0 chr4 172071642 172071708 -30256639 - MLT1A2-int LTR MaLR -1305 66 1 881 195 183 72 chr4 172071711 172072044 -30256303 - MLT1A2 LTR MaLR -4 370 1 1641 304 28 4 chr4 172072215 172072751 -30255596 + ERVL LTR ERVL 2126 2674 -3090 180 0 0 0 chr4 172073795 172073815 -30254532 + (TAA)n Simple_repeat Simple_repeat 3 22 0 252 314 9 19 chr4 172073986 172074091 -30254256 + MIR SINE MIR 155 258 -4 1906 229 73 50 chr4 172074647 172075112 -30253235 + MLT1F1 LTR MaLR 1 482 -85 5704 115 12 37 chr4 172075112 172076945 -30251402 - L1PA13 LINE L1 0 6163 4357 1906 229 73 50 chr4 172076945 172077025 -30251322 + MLT1F1 LTR MaLR 482 559 -8 298 359 45 14 chr4 172077183 172077406 -30250941 + MLT1F1-int LTR MaLR 269 498 -873 551 286 83 27 chr4 172077433 172077769 -30250578 + L1M4 LINE L1 4805 5159 -987 21 0 0 0 chr4 172077777 172077798 -30250549 + AT_rich Low_complexity Low_complexity 1 21 0 248 292 77 6 chr4 172077896 172078064 -30250283 - L1M4 LINE L1 -3302 2844 2665 232 250 19 0 chr4 172078434 172078486 -30249861 + CT-rich Low_complexity Low_complexity 1 53 0 764 226 45 41 chr4 172078526 172078747 -30249600 - MLT1A2 LTR MaLR 0 374 153 240 59 0 0 chr4 172078781 172078815 -30249532 + (TG)n Simple_repeat Simple_repeat 1 34 0 313 211 86 0 chr4 172079200 172079291 -30249056 - AluJ/monomer SINE Alu -3 299 243 183 320 94 23 chr4 172080662 172080790 -30247557 + MIR SINE MIR 20 156 -106 389 228 55 39 chr4 172080812 172080939 -30247408 + L1MD1 LINE L1 6112 6240 -2 1811 139 27 14 chr4 172080947 172081241 -30247106 - AluSx SINE Alu -14 298 1 1823 164 13 0 chr4 172081812 172082117 -30246230 + AluSx SINE Alu 1 309 -3 1673 227 54 34 chr4 172083376 172083526 -30244821 - LTR10D LTR ERV1 0 513 367 2054 122 10 10 chr4 172083526 172083837 -30244510 - AluSp SINE Alu -2 311 1 1673 227 54 34 chr4 172083837 172084189 -30244158 - LTR10D LTR ERV1 -146 367 1 658 364 37 7 chr4 172084304 172084738 -30243609 + ERVL LTR ERVL 2077 2523 -3241 605 316 30 13 chr4 172086313 172086544 -30241803 + MIR SINE MIR 1 235 -27 228 143 0 0 chr4 172087093 172087135 -30241212 + (TA)n Simple_repeat Simple_repeat 1 42 0 1916 172 36 3 chr4 172087137 172087474 -30240873 - MER7A DNA MER2_type 0 346 1 280 299 0 0 chr4 172087857 172087934 -30240413 - ERVL LTR ERVL -3605 2159 2083 236 311 155 19 chr4 172088220 172088381 -30239966 - MIR SINE MIR -33 229 47 2031 125 68 31 chr4 172088645 172088996 -30239351 - THE1B LTR MaLR 0 364 1 232 343 0 0 chr4 172089012 172089079 -30239268 - L1ME LINE L1 -525 5645 5579 372 275 83 70 chr4 172089177 172089504 -30238843 - L1ME LINE L1 -773 5373 5043 24 0 0 0 chr4 172090469 172090493 -30237854 + AT_rich Low_complexity Low_complexity 1 24 0 2416 57 3 0 chr4 172090920 172091221 -30237126 + AluY SINE Alu 1 302 -9 923 298 113 36 chr4 172091252 172092028 -30236319 + L1M4 LINE L1 2672 3507 -2639 1184 273 134 30 chr4 172092065 172092630 -30235717 + MLT1E2 LTR MaLR 3 626 0 211 293 0 0 chr4 172094294 172094352 -30233995 - MIR SINE MIR -101 161 104 293 274 85 28 chr4 172094384 172094490 -30233857 - MIR SINE MIR -115 147 36 21 36 0 0 chr4 172094773 172094801 -30233546 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 172094913 172094938 -30233409 + AT_rich Low_complexity Low_complexity 1 25 0 6918 147 34 4 chr4 172096078 172097265 -30231082 - Tigger3b DNA MER2_type -9 1222 1 1246 252 33 3 chr4 172097428 172097761 -30230586 + ERVL LTR ERVL 2583 2925 -2839 879 244 53 10 chr4 172097761 172097970 -30230377 - MER58A DNA MER1_type 0 224 7 1980 284 49 14 chr4 172097974 172098609 -30229738 + ERVL LTR ERVL 2916 3572 -2192 2407 104 0 0 chr4 172098711 172099056 -30229291 + L1PA13 LINE L1 5819 6163 0 207 0 0 0 chr4 172099394 172099417 -30228930 + (TG)n Simple_repeat Simple_repeat 2 24 0 24 32 0 0 chr4 172099671 172099702 -30228645 + AT_rich Low_complexity Low_complexity 1 31 0 815 320 43 20 chr4 172100774 172101168 -30227179 + L2 LINE L2 1871 2273 -1041 293 219 32 41 chr4 172101170 172101293 -30227054 + (TA)n Simple_repeat Simple_repeat 1 122 0 185 154 26 0 chr4 172101327 172101366 -30226981 + (TA)n Simple_repeat Simple_repeat 1 40 0 341 182 0 0 chr4 172101395 172101461 -30226886 - MER54B LTR ERVL 0 793 728 * 498 252 9 0 chr4 172101452 172101567 -30226780 - MER54B LTR ERVL -193 600 485 593 268 83 109 chr4 172101905 172102016 -30226331 + L2 LINE L2 2438 2550 -764 2747 145 60 4 chr4 172102016 172102520 -30225827 + L1MA5 LINE L1 5768 6299 -1 593 268 83 109 chr4 172102520 172102747 -30225600 + L2 LINE L2 2550 2767 -547 1966 217 36 74 chr4 172102749 172102936 -30225411 - L1MDa LINE L1 -4199 2341 2149 1795 179 0 3 chr4 172102936 172103248 -30225099 - AluJb SINE Alu -1 311 1 1966 217 36 74 chr4 172103248 172103780 -30224567 - L1MDa LINE L1 -4391 2149 1649 928 266 40 121 chr4 172104175 172104834 -30223513 + MER21B LTR ERV1 98 702 -161 180 0 0 0 chr4 172105276 172105296 -30223051 + (TTATA)n Simple_repeat Simple_repeat 5 24 0 1803 145 11 71 chr4 172105620 172105985 -30222362 - MER2 DNA MER2_type 0 344 2 21 0 0 0 chr4 172106620 172106641 -30221706 + AT_rich Low_complexity Low_complexity 1 21 0 6090 148 38 20 chr4 172107838 172108944 -30219403 - Tigger3b DNA MER2_type -105 1126 1 28 29 0 0 chr4 172109514 172109549 -30218798 + AT_rich Low_complexity Low_complexity 1 35 0 245 347 41 20 chr4 172109607 172109705 -30218642 + MIR SINE MIR 44 143 -65 5780 109 3 19 chr4 172109720 172110604 -30217743 - L1PA13 LINE L1 -2 6161 5292 22 0 0 0 chr4 172111559 172111581 -30216766 + AT_rich Low_complexity Low_complexity 1 22 0 206 241 0 17 chr4 172112075 172112133 -30216214 + GA-rich Low_complexity Low_complexity 2 58 0 1223 229 106 85 chr4 172112278 172112798 -30215549 + MLT1F LTR MaLR 11 541 -1 23 33 0 0 chr4 172113161 172113191 -30215156 + AT_rich Low_complexity Low_complexity 1 30 0 35 71 0 0 chr4 172113229 172113299 -30215048 + AT_rich Low_complexity Low_complexity 1 70 0 381 320 8 8 chr4 172115357 172115479 -30212868 - L2 LINE L2 0 3313 3192 519 220 89 30 chr4 172116054 172116222 -30212125 + MER92C LTR ERV1 211 388 -166 882 133 60 7 chr4 172116229 172116380 -30211967 + MLT1A1 LTR MaLR 5 163 -202 7117 36 2 0 chr4 172116420 172117313 -30211034 - L1P LINE L1 -2979 3167 2273 5462 8 0 0 chr4 172117332 172117945 -30210402 - L1HS LINE L1 0 6155 5543 1842 5 0 0 chr4 172117945 172118155 -30210192 + L1P1 LINE L1 5324 5533 -622 * 4897 51 0 0 chr4 172118148 172118756 -30209591 - L1P LINE L1 -3854 2292 1685 * 5565 31 1 6 chr4 172118754 172119806 -30208541 + L1P2 LINE L1 4712 5759 -396 300 27 0 0 chr4 172120675 172120712 -30207635 + (CA)n Simple_repeat Simple_repeat 2 38 0 27 0 0 0 chr4 172121786 172121813 -30206534 + AT_rich Low_complexity Low_complexity 1 27 0 261 318 183 0 chr4 172122029 172122281 -30206066 - L2 LINE L2 -546 2768 2471 1895 172 81 5 chr4 172123310 172123706 -30204641 - MSTB LTR MaLR 0 426 1 333 344 32 6 chr4 172123806 172123963 -30204384 - HERV16 LTR ERVL -827 4937 4777 2903 165 84 0 chr4 172123985 172124523 -30203824 - L1PA16 LINE L1 -1 6165 5583 295 333 42 30 chr4 172124789 172125053 -30203294 - HERV16 LTR ERVL -1733 4031 3765 415 366 11 0 chr4 172125200 172125375 -30202972 - HERV16 LTR ERVL -3125 1871 1695 248 268 0 0 chr4 172126697 172126753 -30201594 - MLT1I LTR MaLR -51 358 303 26 0 0 0 chr4 172127148 172127174 -30201173 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 172128781 172128802 -30199545 + AT_rich Low_complexity Low_complexity 1 21 0 245 271 19 75 chr4 172128987 172129094 -30199253 - L2 LINE L2 -8 3305 3205 21 0 0 0 chr4 172130811 172130832 -30197515 + AT_rich Low_complexity Low_complexity 1 21 0 236 219 125 31 chr4 172131425 172131521 -30196826 + L1MC5 LINE L1 6768 6872 -1089 298 286 54 54 chr4 172131963 172132148 -30196199 - MIR SINE MIR 0 262 78 21 57 0 0 chr4 172132322 172132357 -30195990 + AT_rich Low_complexity Low_complexity 1 35 0 239 278 0 0 chr4 172132716 172132770 -30195577 + L2 LINE L2 3214 3267 -5 264 100 0 0 chr4 172132770 172132810 -30195537 + (GGGA)n Simple_repeat Simple_repeat 1 40 0 1215 57 23 6 chr4 172134167 172134343 -30194004 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 201 272 88 53 chr4 172134674 172134788 -30193559 - MIR SINE MIR -44 218 101 609 132 0 70 chr4 172135230 172135359 -30192988 - L1PA11 LINE L1 0 6174 6055 22 35 0 0 chr4 172135696 172135725 -30192622 + AT_rich Low_complexity Low_complexity 1 29 0 2057 91 0 37 chr4 172137137 172137433 -30190914 + AluY SINE Alu 1 285 -26 239 0 0 31 chr4 172137436 172137468 -30190879 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 23 33 0 0 chr4 172137468 172137498 -30190849 + AT_rich Low_complexity Low_complexity 1 30 0 3785 33 4 0 chr4 172137595 172138082 -30190265 + L1PA3 LINE L1 5699 6187 0 197 59 59 0 chr4 172138268 172138302 -30190045 + T-rich Low_complexity Low_complexity 4 39 0 2392 90 3 3 chr4 172138503 172138814 -30189533 - AluSp SINE Alu -2 311 1 267 312 59 41 chr4 172139349 172139519 -30188828 + HAL1 LINE L1 1 173 -2334 1666 129 12 106 chr4 172139519 172139860 -30188487 + AluJo SINE Alu 1 309 -3 726 322 87 67 chr4 172140120 172140824 -30187523 + HAL1 LINE L1 583 1300 -1207 644 294 101 60 chr4 172141448 172142010 -30186337 + HAL1 LINE L1 1307 1891 -616 4192 144 4 39 chr4 172142147 172142945 -30185402 + L1MA4A LINE L1 5529 6298 -5 279 181 0 28 chr4 172143163 172143235 -30185112 + HAL1 LINE L1 2264 2333 -174 378 0 0 0 chr4 172143429 172143471 -30184876 + (CA)n Simple_repeat Simple_repeat 1 42 0 334 44 0 0 chr4 172143712 172143757 -30184590 - MADE1 DNA Mariner 0 80 36 186 43 0 0 chr4 172143962 172143985 -30184362 + (TAA)n Simple_repeat Simple_repeat 2 24 0 532 239 46 46 chr4 172143994 172144191 -30184156 - MIR SINE MIR -65 197 1 1983 137 0 3 chr4 172144499 172144810 -30183537 - AluSx SINE Alu 0 310 1 586 64 11 21 chr4 172144813 172144907 -30183440 - L1MA5 LINE L1 -2 6298 6206 2298 88 3 0 chr4 172145029 172145325 -30183022 - AluSx SINE Alu -15 297 1 206 351 36 36 chr4 172145352 172145463 -30182884 + L2 LINE L2 2943 3053 -219 382 333 14 7 chr4 172145627 172145771 -30182576 + LTR16B LTR ERVL 12 156 -308 344 299 98 11 chr4 172145824 172146008 -30182339 + LTR16B LTR ERVL 265 464 0 1543 225 0 0 chr4 172146233 172146513 -30181834 - AluJb SINE Alu -30 282 3 832 230 5 142 chr4 172146516 172146890 -30181457 - MLT1A1 LTR MaLR -42 323 1 355 304 35 81 chr4 172147034 172147294 -30181053 - MLT1K LTR MaLR -36 552 305 26 0 0 0 chr4 172147638 172147664 -30180683 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 172148316 172148337 -30180010 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 172148400 172148421 -30179926 + AT_rich Low_complexity Low_complexity 1 21 0 369 208 8 24 chr4 172148715 172148840 -30179507 + GA-rich Low_complexity Low_complexity 2 124 0 24 0 0 0 chr4 172149169 172149193 -30179154 + AT_rich Low_complexity Low_complexity 1 24 0 32 75 0 0 chr4 172149378 172149445 -30178902 + AT_rich Low_complexity Low_complexity 1 67 0 498 252 25 25 chr4 172149591 172149750 -30178597 + LTR65 LTR ERV1 9 167 -502 22 56 0 0 chr4 172150239 172150275 -30178072 + AT_rich Low_complexity Low_complexity 1 36 0 723 284 39 8 chr4 172150562 172150816 -30177531 - L1ME3A LINE L1 -6 6164 5903 341 208 107 95 chr4 172151199 172151367 -30176980 + MIR SINE MIR 90 259 -3 567 123 0 0 chr4 172151416 172151497 -30176850 - AluSq/x SINE Alu -179 133 53 899 126 8 0 chr4 172151499 172151626 -30176721 + AluSg/x SINE Alu 166 293 -19 1689 221 27 37 chr4 172152030 172152796 -30175551 + L1M2 LINE L1 2452 5325 -821 * 4947 189 23 11 chr4 172152795 172154708 -30173639 + L1PB4 LINE L1 4216 6156 0 2419 169 14 5 chr4 172154715 172155153 -30173194 + L1M2 LINE L1 5319 5760 -531 * 5315 140 33 15 chr4 172155150 172156191 -30172156 + L1PB1 LINE L1 5003 6073 -78 2136 106 6 13 chr4 172156191 172156502 -30171845 + AluSx SINE Alu 1 309 -3 5315 140 33 15 chr4 172156502 172156583 -30171764 + L1PB1 LINE L1 6073 6151 0 39 74 0 0 chr4 172156841 172156922 -30171425 + AT_rich Low_complexity Low_complexity 1 81 0 22 35 0 0 chr4 172156964 172156993 -30171354 + AT_rich Low_complexity Low_complexity 1 29 0 524 208 49 82 chr4 172157003 172157186 -30171161 - MLT2B1 LTR ERVL -40 480 304 695 204 6 42 chr4 172157188 172157355 -30170992 - MLT2B1 LTR ERVL -359 161 1 2356 74 0 0 chr4 172157993 172158313 -30170034 + AluY SINE Alu 1 320 0 28 48 0 0 chr4 172158595 172158637 -30169710 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr4 172159664 172159696 -30168651 + AT_rich Low_complexity Low_complexity 1 32 0 2790 16 0 10 chr4 172159701 172160015 -30168332 + AluY SINE Alu 1 311 0 730 258 119 29 chr4 172160688 172160998 -30167349 + MER58B DNA MER1_type 4 341 0 261 319 35 18 chr4 172161003 172161116 -30167231 + L2 LINE L2 3194 3308 -5 251 336 27 0 chr4 172162221 172162331 -30166016 + MIR3 SINE MIR 92 204 -4 1689 203 61 3 chr4 172162640 172162985 -30165362 - MLT1A1 LTR MaLR 0 365 1 4002 182 31 38 chr4 172166111 172166876 -30161471 - MER52A LTR ERV1 0 1755 996 1760 169 13 0 chr4 172167665 172167972 -30160375 - AluSx SINE Alu -1 311 1 240 100 0 0 chr4 172167999 172168039 -30160308 + (TC)n Simple_repeat Simple_repeat 2 41 0 * 351 113 0 0 chr4 172168038 172168053 -30160294 + (CA)n Simple_repeat Simple_repeat 1 68 0 351 113 0 0 chr4 172168053 172168106 -30160241 + (CA)n Simple_repeat Simple_repeat 2 54 0 798 158 13 7 chr4 172168233 172168385 -30159962 + L1MB3 LINE L1 6027 6179 -4 458 143 71 0 chr4 172168597 172168681 -30159666 + Tigger5 DNA MER2_type 1 90 -2233 * 528 192 58 0 chr4 172168679 172168783 -30159564 + Tigger5 DNA MER2_type 2214 2323 0 264 188 0 0 chr4 172168980 172169044 -30159303 + C-rich Low_complexity Low_complexity 3 66 0 330 26 0 0 chr4 172169929 172169968 -30158379 + (TTTAA)n Simple_repeat Simple_repeat 3 41 0 2378 52 0 3 chr4 172169968 172170254 -30158093 - AluY SINE Alu -26 285 1 225 0 0 0 chr4 172170309 172170334 -30158013 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 238 250 204 0 chr4 172170336 172170424 -30157923 - L2 LINE L2 -11 3302 3197 2255 316 136 35 chr4 172170550 172171878 -30156469 - L2 LINE L2 -343 2971 1509 21 0 0 0 chr4 172171957 172171978 -30156369 + AT_rich Low_complexity Low_complexity 1 21 0 417 346 53 33 chr4 172172562 172172810 -30155537 + MIR SINE MIR 8 258 -4 533 313 19 28 chr4 172173972 172174183 -30154164 - MIR SINE MIR -34 228 20 765 342 85 12 chr4 172174982 172175394 -30152953 + L2 LINE L2 2533 2974 -340 1730 150 10 20 chr4 172175435 172175741 -30152606 + AluSx SINE Alu 1 303 -9 315 314 0 105 chr4 172175970 172176123 -30152224 + L2 LINE L2 3134 3270 -2 32 67 0 0 chr4 172176126 172176186 -30152161 + AT_rich Low_complexity Low_complexity 1 60 0 3716 189 31 57 chr4 172176344 172177339 -30151008 + LTR5 LTR ERVK 1 969 0 215 257 0 43 chr4 172177845 172177915 -30150432 + MIR SINE MIR 178 244 -18 213 371 43 13 chr4 172178003 172178235 -30150112 + L2 LINE L2 532 770 -2544 1501 249 64 0 chr4 172178252 172178625 -30149722 - MER99 DNA DNA -3 825 429 272 254 64 0 chr4 172178641 172178751 -30149596 + L1MCc LINE L1 30 146 -6277 315 324 163 18 chr4 172178849 172179235 -30149112 + L2 LINE L2 1994 2435 -879 1335 280 159 10 chr4 172179904 172180551 -30147796 - L1ME2 LINE L1 -1 6163 5427 5423 176 20 67 chr4 172180565 172181647 -30146700 - L1PA16 LINE L1 -10 6156 5258 2076 140 0 0 chr4 172181647 172181947 -30146400 + AluSp SINE Alu 1 300 -13 5423 176 20 67 chr4 172181947 172183185 -30145162 - L1PA16 LINE L1 -908 5258 3964 320 217 0 48 chr4 172183247 172183330 -30145017 + L1 LINE L1 3902 3980 -2166 1039 216 136 0 chr4 172183334 172183598 -30144749 - AluJo SINE Alu -1 311 12 477 207 29 36 chr4 172183602 172183742 -30144605 - L1ME2 LINE L1 -1475 4671 4533 969 286 49 35 chr4 172183787 172184335 -30144012 + L1ME3A LINE L1 5549 6104 -66 251 259 9 18 chr4 172184452 172184564 -30143783 - Charlie7 DNA MER1_type -43 2569 2459 579 105 0 0 chr4 172184566 172184652 -30143695 - L1PA8 LINE L1 0 6172 6087 257 281 61 70 chr4 172186488 172186602 -30141745 + MIR SINE MIR 115 227 -35 28 48 0 0 chr4 172186700 172186742 -30141605 + AT_rich Low_complexity Low_complexity 1 42 0 293 199 47 47 chr4 172186881 172187052 -30141295 + (TATATG)n Simple_repeat Simple_repeat 4 174 0 26 0 0 0 chr4 172187222 172187248 -30141099 + AT_rich Low_complexity Low_complexity 1 26 0 264 59 0 0 chr4 172187346 172187380 -30140967 + (CA)n Simple_repeat Simple_repeat 2 35 0 2399 47 0 13 chr4 172187923 172188223 -30140124 + AluY SINE Alu 1 296 -15 188 329 98 69 chr4 172188305 172188724 -30139623 + L2 LINE L2 1287 1717 -1597 246 273 0 20 chr4 172189507 172189606 -30138741 - L1MC4 LINE L1 -1332 6710 6614 334 365 65 4 chr4 172189901 172190131 -30138216 - L1MEd LINE L1 -5775 344 101 1979 154 62 0 chr4 172191028 172191366 -30136981 - MER47A DNA MER2_type 0 366 8 11264 223 19 12 chr4 172191800 172192486 -30135861 - L1PA16 LINE L1 -216 5950 5270 1392 193 207 8 chr4 172192486 172192843 -30135504 - MSTA LTR MaLR 0 428 1 11264 223 19 12 chr4 172192843 172195766 -30132581 - L1PA16 LINE L1 -896 5270 2318 1393 184 68 59 chr4 172196715 172197154 -30131193 + L1M2 LINE L1 5263 5705 -607 31 68 0 0 chr4 172197716 172197775 -30130572 + AT_rich Low_complexity Low_complexity 1 59 0 483 165 126 19 chr4 172198984 172199087 -30129260 - FLAM_A SINE Alu -8 134 21 194 266 31 31 chr4 172199187 172199251 -30129096 + L2 LINE L2 3250 3313 0 313 167 0 17 chr4 172200611 172200671 -30127676 + L1MC4 LINE L1 6648 6706 -1336 191 232 424 0 chr4 172201432 172201531 -30126816 + MIR3 SINE MIR 37 177 -31 408 320 85 66 chr4 172201722 172202147 -30126200 + L2 LINE L2 2499 2931 -383 21 36 0 0 chr4 172202476 172202504 -30125843 + AT_rich Low_complexity Low_complexity 1 28 0 37 62 0 0 chr4 172202782 172202847 -30125500 + AT_rich Low_complexity Low_complexity 1 65 0 761 213 203 18 chr4 172204127 172204413 -30123934 - MER44D DNA MER2_type 0 609 1 351 363 7 0 chr4 172204771 172204917 -30123430 + L3 LINE CR1 1368 1514 -63 401 314 98 0 chr4 172204920 172205073 -30123274 + MER45A DNA AcHobo 4 171 -7 1803 176 67 43 chr4 172206266 172206300 -30122047 - MLT2D LTR ERVL -11 403 371 405 58 0 0 chr4 172206300 172206352 -30121995 + (TG)n Simple_repeat Simple_repeat 1 52 0 1803 176 67 43 chr4 172206352 172206708 -30121639 - MLT2D LTR ERVL -43 371 4 184 323 89 57 chr4 172208055 172208179 -30120168 + MIR3 SINE MIR 47 174 -34 31 0 0 0 chr4 172208432 172208463 -30119884 + AT_rich Low_complexity Low_complexity 1 31 0 886 242 12 29 chr4 172209299 172209539 -30118808 - L1ME2 LINE L1 -10 6154 5919 384 324 80 40 chr4 172209860 172210234 -30118113 - L1ME LINE L1 -5617 453 65 410 150 54 24 chr4 172210425 172210592 -30117755 + (TA)n Simple_repeat Simple_repeat 2 173 0 348 169 74 18 chr4 172210576 172210850 -30117497 + (TATATG)n Simple_repeat Simple_repeat 1 289 0 * 358 153 71 24 chr4 172210850 172211020 -30117327 + (TA)n Simple_repeat Simple_repeat 2 179 0 250 194 65 18 chr4 172211047 172211217 -30117130 + (TA)n Simple_repeat Simple_repeat 2 179 0 429 143 42 39 chr4 172211255 172211618 -30116729 + (TA)n Simple_repeat Simple_repeat 1 364 0 1198 196 9 0 chr4 172211776 172212000 -30116347 + AluJb SINE Alu 86 311 -1 180 0 0 0 chr4 172212032 172212052 -30116295 + (CAA)n Simple_repeat Simple_repeat 2 21 0 30 27 0 0 chr4 172212325 172212362 -30115985 + AT_rich Low_complexity Low_complexity 1 37 0 28 60 0 15 chr4 172212415 172212452 -30115895 + AT_rich Low_complexity Low_complexity 1 38 -28 2199 108 0 0 chr4 172212452 172212740 -30115607 - AluSc SINE Alu -21 288 1 28 60 0 15 chr4 172212740 172212769 -30115578 + AT_rich Low_complexity Low_complexity 38 66 0 205 271 17 17 chr4 172212812 172212871 -30115476 - L3 LINE CR1 -27 1550 1492 219 320 92 26 chr4 172213546 172213699 -30114648 - L3b LINE CR1 -145 1438 1276 2039 137 3 0 chr4 172213715 172214022 -30114325 - AluSx SINE Alu -4 308 1 203 109 65 22 chr4 172214135 172214181 -30114166 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 360 316 0 0 chr4 172214245 172214362 -30113985 + MLT1I LTR MaLR 83 199 -210 342 331 73 0 chr4 172264900 172265024 -30063323 + L2 LINE L2 3138 3270 -2 744 284 112 16 chr4 172265406 172265864 -30062483 - L2 LINE L2 -150 3163 2660 642 294 144 25 chr4 172265968 172266363 -30061984 - MLT1K LTR MaLR -112 476 35 331 314 57 16 chr4 172266442 172266566 -30061781 + MER117 DNA MER1_type 21 149 -48 372 325 40 0 chr4 172266930 172267056 -30061291 - L2 LINE L2 -10 3262 3132 405 228 85 9 chr4 172267878 172268061 -30060286 - MER58 DNA MER1_type -5 2415 9 219 167 0 0 chr4 172269114 172269156 -30059191 + (TGGA)n Simple_repeat Simple_repeat 2 43 0 227 259 25 12 chr4 172270012 172270093 -30058254 + CT-rich Low_complexity Low_complexity 2 83 0 1161 86 12 0 chr4 172270201 172270364 -30057983 + L1PB1 LINE L1 5986 6150 -1 23 0 0 0 chr4 172270364 172270387 -30057960 + AT_rich Low_complexity Low_complexity 1 23 0 4173 204 30 14 chr4 172271427 172272670 -30055677 - L1M3 LINE L1 -566 5617 4353 897 200 47 51 chr4 172272786 172272860 -30055487 - MER20 DNA MER1_type 0 219 146 1582 198 3 14 chr4 172272860 172273148 -30055199 - AluJo SINE Alu -25 287 3 897 200 47 51 chr4 172273148 172273288 -30055059 - MER20 DNA MER1_type -73 146 6 445 251 110 36 chr4 172273444 172273663 -30054684 + MIR SINE MIR 20 254 -8 2301 125 0 0 chr4 172273842 172274154 -30054193 + AluSx SINE Alu 1 312 0 440 307 97 11 chr4 172274444 172274620 -30053727 + MIR SINE MIR 41 231 -31 1982 180 25 3 chr4 172274620 172274975 -30053372 + MLT1A1 LTR MaLR 1 363 -2 356 287 61 54 chr4 172275759 172276096 -30052251 + MLT1K LTR MaLR 154 532 -56 1647 253 74 21 chr4 172276588 172276660 -30051687 + MER21B LTR ERV1 283 350 -513 1611 168 70 24 chr4 172276660 172276988 -30051359 - MER61A LTR ERV1 0 343 1 1647 253 74 21 chr4 172276988 172277401 -30050946 + MER21B LTR ERV1 350 794 -69 225 190 121 0 chr4 172277539 172277597 -30050750 - MER117 DNA MER1_type -48 149 85 370 283 22 0 chr4 172278131 172278223 -30050124 - L1ME1 LINE L1 -52 6114 6021 274 178 41 55 chr4 172278441 172278514 -30049833 + MIR SINE MIR 73 144 -118 338 301 158 6 chr4 172278530 172278713 -30049634 + L2 LINE L2 2488 2698 -616 2906 182 37 10 chr4 172278723 172279338 -30049009 + L1 LINE L1 3937 4568 -1578 954 262 73 11 chr4 172279721 172279996 -30048351 + MLT1J LTR MaLR 18 309 -202 1198 126 11 0 chr4 172280582 172280757 -30047590 + AluSx SINE Alu 1 177 -135 5952 106 23 0 chr4 172280857 172281726 -30046621 + L1PA14 LINE L1 5273 6161 0 191 324 93 29 chr4 172281727 172281866 -30046481 + L3 LINE CR1 298 445 -1132 560 189 9 0 chr4 172282874 172282985 -30045362 + L1MD2 LINE L1 6234 6345 -14 368 218 149 0 chr4 172283241 172283328 -30045019 - L2 LINE L2 -10 3262 3163 1526 218 20 22 chr4 172283696 172283805 -30044542 - MER63 DNA MER1_type 0 1060 952 2400 50 7 3 chr4 172283805 172284106 -30044241 + AluY SINE Alu 1 302 -9 1526 218 20 22 chr4 172284106 172284354 -30043993 - MER63 DNA MER1_type -108 952 704 319 85 34 34 chr4 172284460 172284519 -30043828 - MIR SINE MIR -122 140 82 216 310 113 80 chr4 172284759 172284998 -30043349 - MIR SINE MIR -4 258 12 1227 78 0 0 chr4 172286035 172286189 -30042158 + PABL_A LTR ERV1 507 660 0 1787 97 0 0 chr4 172286837 172287064 -30041283 + AluSq SINE Alu 1 227 -86 207 313 10 20 chr4 172287312 172287411 -30040936 + GA-rich Low_complexity Low_complexity 3 100 0 396 55 0 0 chr4 172287925 172287980 -30040367 + (TA)n Simple_repeat Simple_repeat 1 55 0 405 39 0 0 chr4 172288456 172288507 -30039840 + (TG)n Simple_repeat Simple_repeat 2 52 0 1184 102 98 37 chr4 172289548 172289763 -30038584 - L1PA8 LINE L1 -4 6168 5941 406 141 35 0 chr4 172289874 172289959 -30038388 + GA-rich Low_complexity Low_complexity 1 88 0 200 319 83 99 chr4 172290237 172290550 -30037797 + L2 LINE L2 2963 3270 -2 24 32 0 0 chr4 172290550 172290581 -30037766 + AT_rich Low_complexity Low_complexity 1 31 0 194 264 19 0 chr4 172290703 172290756 -30037591 + L2 LINE L2 1745 1798 -1516 1273 194 66 130 chr4 172290768 172291299 -30037048 + MLT1D LTR MaLR 9 505 0 547 302 25 0 chr4 172291305 172291464 -30036883 + L2 LINE L2 1805 1967 -1347 432 283 97 49 chr4 172291684 172291931 -30036416 + L1M4 LINE L1 4289 4547 -1599 810 119 0 35 chr4 172292484 172292627 -30035720 + AluSp/q SINE Alu 176 313 0 1101 70 28 0 chr4 172293111 172293253 -30035094 + THE1B LTR MaLR 3 148 -216 2561 117 0 14 chr4 172293377 172293746 -30034601 - THE1B LTR MaLR 0 364 1 1451 206 76 0 chr4 172293919 172294196 -30034151 + AluSx SINE Alu 1 298 -14 2363 84 0 10 chr4 172294686 172294995 -30033352 + AluY SINE Alu 1 306 -5 771 245 6 0 chr4 172295026 172295189 -30033158 - MER58B DNA MER1_type 0 341 178 2346 65 3 3 chr4 172295195 172295489 -30032858 + AluY SINE Alu 1 294 -17 2176 115 3 0 chr4 172296374 172296670 -30031677 + AluSp SINE Alu 1 297 -16 217 305 134 27 chr4 172296706 172296929 -30031418 + L2 LINE L2 2009 2255 -1059 2428 334 85 49 chr4 172296990 172299134 -30029213 - L2 LINE L2 -248 3065 772 440 364 29 29 chr4 172299192 172299508 -30028839 + L2 LINE L2 2614 2929 -385 391 276 19 9 chr4 172300034 172300139 -30028208 + L2 LINE L2 3200 3305 -8 628 227 6 86 chr4 172300942 172301105 -30027242 - FAM SINE Alu -35 150 1 21 36 0 0 chr4 172301105 172301133 -30027214 + AT_rich Low_complexity Low_complexity 1 28 0 1120 261 85 29 chr4 172301518 172301978 -30026369 - MLT2B1 LTR ERVL -29 468 1 24 0 0 0 chr4 172302503 172302527 -30025820 + AT_rich Low_complexity Low_complexity 1 24 0 827 224 10 55 chr4 172302866 172303067 -30025280 + MIR SINE MIR 7 198 -64 194 293 179 28 chr4 172304327 172304433 -30023914 - L2 LINE L2 -1019 2295 2174 975 285 51 40 chr4 172304515 172304943 -30023404 - L2 LINE L2 -1279 2035 1603 1982 177 9 25 chr4 172306380 172306803 -30021544 - MLT2D LTR ERVL -8 456 1 1496 209 39 16 chr4 172307324 172307688 -30020659 + L1MC1 LINE L1 4741 5112 -1034 4999 176 49 1 chr4 172307795 172308760 -30019587 + L1MC1 LINE L1 5322 6332 -1 228 258 107 43 chr4 172309358 172309543 -30018804 - L1ME LINE L1 -426 5736 5539 227 280 0 0 chr4 172310735 172310785 -30017562 - MIR3 SINE MIR -35 173 124 1867 119 49 82 chr4 172311026 172311414 -30016933 + THE1C LTR MaLR 1 375 0 23 54 0 0 chr4 172311934 172311971 -30016376 + AT_rich Low_complexity Low_complexity 1 37 0 724 283 67 22 chr4 172312250 172312473 -30015874 + MIR SINE MIR 6 238 -24 489 16 0 0 chr4 172312661 172312723 -30015624 + AluY SINE Alu 1 62 -256 1964 78 4 19 chr4 172312824 172313094 -30015253 - PABL_A LTR ERV1 -394 266 1 19597 77 28 7 chr4 172313094 172316121 -30012226 - PABL_A-int LTR ERV1 0 5015 1863 530 191 67 6 chr4 172316122 172316331 -30012016 + LTR8 LTR ERV1 1 253 -438 3184 63 11 104 chr4 172316331 172316886 -30011461 - PABL_A-int LTR ERV1 -3362 1653 1151 * 5832 106 6 44 chr4 172316878 172317812 -30010535 - PABL_A-int LTR ERV1 -4116 899 1 4920 89 1 5 chr4 172317812 172318474 -30009873 - PABL_A LTR ERV1 0 660 1 343 246 8 41 chr4 172318604 172318726 -30009621 - LTR41 LTR ERVL -6 767 650 583 247 67 11 chr4 172319154 172319332 -30009015 - LTR41 LTR ERVL -583 190 3 1007 280 76 30 chr4 172319523 172319930 -30008417 - LTR47B LTR ERVL 0 443 18 1491 99 5 0 chr4 172319936 172320149 -30008198 + L1PA8 LINE L1 5941 6154 -18 308 111 19 0 chr4 172320150 172320204 -30008143 + (GGGAA)n Simple_repeat Simple_repeat 3 57 0 214 320 17 80 chr4 172321546 172321721 -30006626 + MIR SINE MIR 73 236 -26 22 0 0 0 chr4 172323777 172323799 -30004548 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr4 172325915 172325937 -30002410 + (A)n Simple_repeat Simple_repeat 1 22 0 24 32 0 0 chr4 172326234 172326265 -30002082 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr4 172327244 172327270 -30001077 + AT_rich Low_complexity Low_complexity 1 26 0 570 314 77 15 chr4 172327318 172327579 -30000768 + L2 LINE L2 2939 3215 -98 300 295 134 64 chr4 172327668 172328027 -30000320 + MLT1J LTR MaLR 109 492 -19 387 286 10 0 chr4 172328325 172328423 -29999924 + MIR3 SINE MIR 101 199 -9 22 56 0 0 chr4 172328455 172328491 -29999856 + AT_rich Low_complexity Low_complexity 1 36 0 1939 129 11 0 chr4 172328730 172329010 -29999337 + AluSx SINE Alu 21 303 -9 2396 76 0 0 chr4 172329388 172329692 -29998655 + AluY SINE Alu 1 304 -7 742 262 78 86 chr4 172330048 172330433 -29997914 - MER41C LTR ERV1 -172 382 1 200 316 0 51 chr4 172330980 172331059 -29997288 + MIR SINE MIR 68 142 -120 2010 79 26 0 chr4 172331504 172331683 -29996664 - AluY SINE Alu 0 311 121 238 0 81 0 chr4 172331683 172331720 -29996627 + T-rich Low_complexity Low_complexity 5 44 0 2010 79 26 0 chr4 172331720 172331806 -29996541 - AluY SINE Alu -190 121 39 3288 193 121 6 chr4 172332650 172333452 -29994895 + L1PB3 LINE L1 5254 6147 -7 7001 131 29 25 chr4 172334243 172335468 -29992879 - Tigger3b DNA MER2_type 0 1231 2 330 298 62 62 chr4 172337052 172337324 -29991023 + L1ME LINE L1 576 874 -5223 884 230 233 6 chr4 172337674 172338169 -29990178 + MLT1E1 LTR MaLR 1 654 0 227 227 0 30 chr4 172339309 172339375 -29988972 + (CATATA)n Simple_repeat Simple_repeat 4 67 0 1999 217 82 0 chr4 172340944 172341373 -29986974 - MLT2C2 LTR ERVL 0 464 1 491 110 0 0 chr4 172342332 172342414 -29985933 - L1PA8A LINE L1 -333 5798 5717 212 200 22 0 chr4 172342828 172342873 -29985474 + (CATA)n Simple_repeat Simple_repeat 2 47 0 379 338 27 0 chr4 172343559 172343707 -29984640 - MLT1J LTR MaLR -240 271 120 23 68 0 0 chr4 172343834 172343878 -29984469 + AT_rich Low_complexity Low_complexity 1 44 0 302 323 0 0 chr4 172343878 172343971 -29984376 - MLT1J LTR MaLR -399 112 20 21 0 0 0 chr4 172344044 172344065 -29984282 + AT_rich Low_complexity Low_complexity 1 21 0 391 239 55 9 chr4 172344204 172344313 -29984034 + MLT1J LTR MaLR 398 511 0 377 331 48 8 chr4 172344439 172344563 -29983784 - L2 LINE L2 -6 3307 3179 228 333 152 8 chr4 172344672 172344804 -29983543 + L3 LINE CR1 1396 1546 -31 1239 115 11 11 chr4 172345705 172345896 -29982451 - L1MA4 LINE L1 -302 5998 5808 1028 122 5 32 chr4 172345896 172346075 -29982272 + L1MA4 LINE L1 6111 6294 -6 24 0 0 0 chr4 172346746 172346770 -29981577 + AT_rich Low_complexity Low_complexity 1 24 0 2419 47 0 3 chr4 172347121 172347417 -29980930 + AluY SINE Alu 1 295 -16 1356 137 159 0 chr4 172347785 172348055 -29980292 - L1MC1 LINE L1 0 6333 6021 26 30 0 0 chr4 172348067 172348100 -29980247 + AT_rich Low_complexity Low_complexity 1 33 0 187 26 0 79 chr4 172349690 172349728 -29978619 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2078 196 84 85 chr4 172350348 172351074 -29977273 + MER50 LTR ERV1 10 734 0 571 259 49 13 chr4 172351857 172352038 -29976309 + L1MC5 LINE L1 6618 6809 -1005 22 0 0 0 chr4 172352060 172352082 -29976265 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 172352110 172352135 -29976212 + AT_rich Low_complexity Low_complexity 1 25 0 1320 282 70 21 chr4 172352185 172352660 -29975687 - L1MD2 LINE L1 -245 6114 5617 1193 291 98 7 chr4 172352685 172353091 -29975256 + MLT1E1 LTR MaLR 1 443 -211 728 271 81 26 chr4 172353101 172353738 -29974609 + L1MEc LINE L1 1870 2599 -4122 430 295 133 22 chr4 172353795 172354110 -29974237 + L1MEc LINE L1 3660 4009 -2531 922 246 15 0 chr4 172354110 172354309 -29974038 - MLT1E1 LTR MaLR 0 654 453 970 131 0 0 chr4 172354309 172354454 -29973893 - LTR46-int LTR ERV1 -3096 3889 3745 672 147 0 0 chr4 172354454 172354556 -29973791 - AluS SINE Alu -210 102 1 5659 150 34 15 chr4 172354561 172355046 -29973301 - LTR46-int LTR ERV1 -5308 1677 1203 1938 119 49 0 chr4 172355046 172355331 -29973016 + AluSx SINE Alu 14 312 0 5659 150 34 15 chr4 172355331 172355915 -29972432 - LTR46-int LTR ERV1 -5782 1203 658 3589 143 3 9 chr4 172356037 172356619 -29971728 - LTR46-int LTR ERV1 -6406 579 1 2571 122 28 41 chr4 172356619 172357085 -29971262 - LTR46 LTR ERV1 0 460 1 657 238 128 21 chr4 172357093 172357374 -29970973 - L1MDa LINE L1 -4673 1733 1423 577 302 23 10 chr4 172357378 172357474 -29970873 - L1MDa LINE L1 -5202 1207 1114 2251 81 3 17 chr4 172357474 172357772 -29970575 - AluY SINE Alu -17 294 1 577 302 23 10 chr4 172357772 172357983 -29970364 - L1MDa LINE L1 -5295 1114 896 229 281 0 0 chr4 172358016 172358080 -29970267 - L1MDa LINE L1 -5571 838 775 2403 140 21 41 chr4 172358275 172358509 -29969838 - MSTA LTR MaLR 0 428 206 2365 71 3 3 chr4 172358509 172358806 -29969541 - AluY SINE Alu -14 297 1 2403 140 21 41 chr4 172358806 172359008 -29969339 - MSTA LTR MaLR -222 206 1 204 133 67 0 chr4 172359043 172359088 -29969259 + A-rich Low_complexity Low_complexity 3 50 0 39 84 0 0 chr4 172360282 172360377 -29967970 + AT_rich Low_complexity Low_complexity 1 95 0 239 321 12 0 chr4 172360566 172360650 -29967697 + MIR SINE MIR 168 252 -10 263 203 16 0 chr4 172361319 172361383 -29966964 + (TA)n Simple_repeat Simple_repeat 1 65 0 3320 162 27 1 chr4 172361834 172362776 -29965571 - L1P5 LINE L1 -567 5584 4622 3377 190 25 3 chr4 172362877 172365434 -29962913 - L1PA15 LINE L1 -149 6016 3274 50 31 0 0 chr4 172365718 172365782 -29962565 + AT_rich Low_complexity Low_complexity 1 64 0 25 0 0 0 chr4 172365878 172365903 -29962444 + AT_rich Low_complexity Low_complexity 1 25 0 1402 73 0 0 chr4 172365932 172366111 -29962236 - AluY SINE Alu 0 311 133 212 193 64 9 chr4 172366200 172366309 -29962038 + (TA)n Simple_repeat Simple_repeat 2 116 0 282 283 39 28 chr4 172367038 172367218 -29961129 - L1MC/D LINE L1 -2332 5476 5295 326 163 0 12 chr4 172367589 172367669 -29960678 + CT-rich Low_complexity Low_complexity 2 80 0 206 203 0 17 chr4 172367668 172367727 -29960620 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 * 695 307 76 43 chr4 172367829 172368221 -29960126 + MLT1G3 LTR MaLR 1 440 -124 7673 54 32 4 chr4 172368221 172368908 -29959439 + LTR13 LTR ERVK 1 725 -282 185 0 40 0 chr4 172368908 172368933 -29959414 + (TC)n Simple_repeat Simple_repeat 1 26 0 7673 54 32 4 chr4 172368933 172369225 -29959122 + LTR13 LTR ERVK 725 1007 0 695 307 76 43 chr4 172369225 172369353 -29958994 + MLT1G3 LTR MaLR 440 562 -2 2240 78 0 0 chr4 172370803 172371157 -29957190 + AluY SINE Alu 1 354 0 24 0 0 0 chr4 172371539 172371563 -29956784 + AT_rich Low_complexity Low_complexity 1 24 0 224 172 17 0 chr4 172371601 172371659 -29956688 + A-rich Low_complexity Low_complexity 2 60 0 201 222 0 0 chr4 172372194 172372230 -29956117 + (CA)n Simple_repeat Simple_repeat 1 36 0 183 138 60 30 chr4 172372240 172372407 -29955940 + (TA)n Simple_repeat Simple_repeat 2 173 0 6971 145 14 9 chr4 172373416 172374595 -29953752 - Tigger1 DNA MER2_type 0 2418 1234 237 296 141 0 chr4 172374959 172375030 -29953317 + MER91A DNA MER1_type 106 186 -10 597 316 73 22 chr4 172375296 172375944 -29952403 + L1ME LINE L1 4907 5594 -570 2424 107 8 6 chr4 172375959 172376313 -29952034 + THE1A LTR MaLR 1 355 0 493 225 16 46 chr4 172376361 172376416 -29951931 + L1ME1 LINE L1 6021 6076 -258 5086 87 110 3 chr4 172376416 172377162 -29951185 - LTR12 LTR ERV1 0 826 1 493 225 16 46 chr4 172377162 172377264 -29951083 + L1ME1 LINE L1 6076 6333 -1 779 338 28 0 chr4 172377588 172377878 -29950469 + HERV16 LTR ERVL 1711 2008 -2988 513 275 55 92 chr4 172377911 172378257 -29950090 + HERV16 LTR ERVL 2139 2471 -3183 322 225 28 0 chr4 172379004 172379075 -29949272 - ERVL LTR ERVL -1907 3857 3785 432 390 0 0 chr4 172379347 172379570 -29948777 - ERVL LTR ERVL -2289 3475 3253 634 333 31 8 chr4 172379600 172379861 -29948486 + HERV16 LTR ERVL 2497 2763 -2233 869 330 50 18 chr4 172379948 172380290 -29948057 + HERV16 LTR ERVL 2744 3096 -1900 879 255 53 40 chr4 172380670 172380992 -29947355 + L1MCb LINE L1 4 329 -5716 399 196 0 181 chr4 172381115 172381248 -29947099 + MER4D-int LTR ERV1 3840 3948 -4172 267 203 47 63 chr4 172381622 172381751 -29946596 + MER4D-int LTR ERV1 5224 5338 -1420 2781 206 56 87 chr4 172381759 172382079 -29946268 + MER4D-int LTR ERV1 5932 6260 -498 182 195 49 24 chr4 172382079 172382120 -29946227 - L3 LINE CR1 -1014 563 522 2781 206 56 87 chr4 172382120 172382612 -29945735 + MER4D-int LTR ERV1 6260 6758 0 2646 181 30 13 chr4 172382612 172383137 -29945210 + MER4D LTR ERV1 1 534 -369 2604 121 24 21 chr4 172383147 172383568 -29944779 + MSTA LTR MaLR 7 428 0 8656 177 31 14 chr4 172383568 172385191 -29943156 + MSTA-int LTR MaLR 1 1651 0 1860 169 86 16 chr4 172385191 172385563 -29942784 + MSTA LTR MaLR 1 398 -30 2012 152 0 0 chr4 172385627 172385930 -29942417 - AluSx SINE Alu -9 303 1 265 128 0 0 chr4 172385930 172385969 -29942378 + MSTA LTR MaLR 390 428 0 1774 190 40 3 chr4 172385969 172386317 -29942030 + MER4D LTR ERV1 535 895 -8 2185 215 34 28 chr4 172386628 172387238 -29941109 + L1MCb LINE L1 568 1181 -4864 334 252 77 77 chr4 172387250 172387484 -29940863 + L1ME4a LINE L1 5782 6015 -106 25 31 0 0 chr4 172387566 172387598 -29940749 + AT_rich Low_complexity Low_complexity 1 32 0 28 29 0 0 chr4 172387809 172387844 -29940503 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 172388778 172388799 -29939548 + AT_rich Low_complexity Low_complexity 1 21 0 4911 150 27 12 chr4 172389010 172390458 -29937889 + L1PA16 LINE L1 4698 6157 -9 446 293 88 21 chr4 172390628 172390867 -29937480 + L1MC/D LINE L1 5383 5637 -2171 2436 61 0 0 chr4 172391180 172391475 -29936872 + AluY SINE Alu 1 295 -16 320 387 38 5 chr4 172392697 172392909 -29935438 + L2 LINE L2 2527 2745 -569 264 185 0 0 chr4 172393199 172393253 -29935094 + GA-rich Low_complexity Low_complexity 3 56 0 188 132 0 26 chr4 172393630 172393636 -29934711 + (TTA)n Simple_repeat Simple_repeat 2 7 -31 7032 47 17 3 chr4 172393636 172395169 -29933178 + L1PA5 LINE L1 4609 6152 -2 188 132 0 26 chr4 172395169 172395200 -29933147 + (TTA)n Simple_repeat Simple_repeat 7 38 0 311 345 134 46 chr4 172395796 172396124 -29932223 - L2 LINE L2 -24 3289 2933 3301 123 47 14 chr4 172397514 172397976 -29930371 + MER1A DNA MER1_type 1 483 -2217 2297 108 3 0 chr4 172397976 172398283 -29930064 + AluSx SINE Alu 1 308 -4 3301 123 47 14 chr4 172398283 172398330 -29930017 + MER1A DNA MER1_type 483 527 0 3040 230 67 39 chr4 172398344 172399541 -29928806 - L1MCb LINE L1 -4906 1139 16 1556 199 50 0 chr4 172400128 172400449 -29927898 - MER1B DNA MER1_type 0 337 1 1063 189 170 30 chr4 172401439 172401704 -29926643 - AluJo SINE Alu 0 302 1 883 305 34 24 chr4 172401976 172402304 -29926043 - LTR40a LTR ERVL -188 331 1 22 0 0 0 chr4 172402601 172402623 -29925724 + AT_rich Low_complexity Low_complexity 1 22 0 1910 103 22 61 chr4 172402623 172402934 -29925413 - AluSc SINE Alu -10 299 1 24 67 0 0 chr4 172403232 172403277 -29925070 + AT_rich Low_complexity Low_complexity 1 45 0 1821 142 0 95 chr4 172404071 172404409 -29923938 - AluJb SINE Alu -6 306 1 19498 157 25 11 chr4 172404443 172409594 -29918753 + L1MA3 LINE L1 520 5797 -1927 1487 231 0 3 chr4 172409594 172409892 -29918455 + AluJo SINE Alu 1 297 -15 19498 157 25 11 chr4 172409892 172411848 -29916499 + L1MA3 LINE L1 5797 7724 0 21 0 0 0 chr4 172411904 172411925 -29916422 + AT_rich Low_complexity Low_complexity 1 21 0 1050 187 118 4 chr4 172412071 172412317 -29916030 + L1MA9 LINE L1 5997 6270 -42 234 369 85 14 chr4 172412397 172412538 -29915809 - L2 LINE L2 -3 3269 3119 23 33 0 0 chr4 172412672 172412702 -29915645 + AT_rich Low_complexity Low_complexity 1 30 0 255 252 50 0 chr4 172412793 172412912 -29915435 + (TA)n Simple_repeat Simple_repeat 1 125 0 221 300 154 18 chr4 172413793 172413903 -29914444 + MIR SINE MIR 88 212 -50 219 350 34 8 chr4 172413992 172414109 -29914238 + MIR SINE MIR 129 248 -14 2135 107 7 10 chr4 172414303 172414601 -29913746 - AluSc SINE Alu -12 297 1 398 282 48 75 chr4 172414750 172414946 -29913401 - L1ME3A LINE L1 -219 5951 5751 1984 135 44 39 chr4 172414946 172415308 -29913039 + THE1B LTR MaLR 1 364 0 398 282 48 75 chr4 172415308 172415330 -29913017 - L1ME3A LINE L1 -419 5751 5730 2110 126 0 3 chr4 172415330 172415640 -29912707 - AluY SINE Alu -2 309 1 398 282 48 75 chr4 172415640 172415726 -29912621 - L1ME3A LINE L1 -440 5730 5655 727 237 36 32 chr4 172415726 172415945 -29912402 - MER58A DNA MER1_type -4 220 1 398 282 48 75 chr4 172415945 172416010 -29912337 - L1ME3A LINE L1 -515 5655 5590 228 267 0 0 chr4 172416116 172416176 -29912171 - L1ME3A LINE L1 -1290 4856 4797 1087 220 128 122 chr4 172416228 172417168 -29911179 + LTR1B LTR ERV1 1 1020 0 411 330 66 22 chr4 172417173 172417400 -29910947 - L1ME3A LINE L1 -1396 4750 4514 1028 300 266 50 chr4 172417443 172417517 -29910830 - L2 LINE L2 -634 2680 2623 1648 238 66 25 chr4 172417517 172418001 -29910346 + MLT1D LTR MaLR 2 505 0 1028 300 266 50 chr4 172418001 172418038 -29910309 - L2 LINE L2 -691 2623 2595 2030 109 7 11 chr4 172418038 172418432 -29909915 + AluSp SINE Alu 1 393 0 1028 300 266 50 chr4 172418432 172420471 -29907876 - L2 LINE L2 -719 2595 62 25 31 0 0 chr4 172421819 172421851 -29906496 + AT_rich Low_complexity Low_complexity 1 32 0 522 307 108 25 chr4 172422372 172422613 -29905734 - MIR SINE MIR -1 261 1 321 329 107 7 chr4 172422783 172422932 -29905415 + MIR SINE MIR 34 197 -65 4320 172 24 17 chr4 172423502 172423688 -29904659 - L1PB4 LINE L1 -1 6155 5972 2173 119 7 0 chr4 172423688 172423998 -29904349 - AluSp SINE Alu -1 312 1 4320 172 24 17 chr4 172423998 172424642 -29903705 - L1PB4 LINE L1 -184 5972 5319 27 0 0 0 chr4 172424642 172424669 -29903678 + AT_rich Low_complexity Low_complexity 1 27 0 1086 93 0 0 chr4 172424677 172424827 -29903520 + AluY SINE Alu 162 311 0 562 175 136 0 chr4 172424829 172424932 -29903415 - AluJo/FLAM SINE Alu -195 117 1 2017 152 18 221 chr4 172424932 172425276 -29903071 - L1PB4 LINE L1 -818 5328 4916 1476 190 15 11 chr4 172425276 172425544 -29902803 + AluJo SINE Alu 3 271 -41 189 0 0 0 chr4 172425545 172425566 -29902781 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 2017 152 18 221 chr4 172425566 172426115 -29902232 - L1PB4 LINE L1 -1229 4917 4615 23 0 0 0 chr4 172426696 172426719 -29901628 + AT_rich Low_complexity Low_complexity 1 23 0 2145 128 0 6 chr4 172427929 172428241 -29900106 - AluSx SINE Alu -2 310 1 25 75 0 0 chr4 172428374 172428427 -29899920 + AT_rich Low_complexity Low_complexity 1 53 0 1839 133 32 4 chr4 172428527 172428805 -29899542 - AluSx SINE Alu -26 286 1 285 259 183 41 chr4 172429811 172430008 -29898339 + LTR16B LTR ERVL 5 229 -235 2149 119 0 0 chr4 172430507 172430800 -29897547 + AluSp SINE Alu 1 293 -20 186 167 0 0 chr4 172431190 172431226 -29897121 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 1051 296 43 56 chr4 172431227 172431758 -29896589 - L2 LINE L2 0 3313 2785 2100 197 111 46 chr4 172432347 172432844 -29895503 + LTR48B LTR ERV1 1 545 -99 2329 75 3 9 chr4 172432844 172433162 -29895185 + L1PA10 LINE L1 5853 6168 0 2100 197 111 46 chr4 172433162 172433269 -29895078 + LTR48B LTR ERV1 545 644 0 298 201 6 6 chr4 172433491 172433650 -29894697 + (TA)n Simple_repeat Simple_repeat 2 160 0 514 175 11 0 chr4 172433670 172433847 -29894500 + (TA)n Simple_repeat Simple_repeat 1 179 0 653 0 73 67 chr4 172433884 172434063 -29894284 + (TATAG)n Simple_repeat Simple_repeat 1 180 0 300 77 0 92 chr4 172434065 172434195 -29894152 + (TA)n Simple_repeat Simple_repeat 1 118 0 243 0 0 0 chr4 172434325 172434352 -29893995 + (TA)n Simple_repeat Simple_repeat 2 28 0 1030 289 94 14 chr4 172434538 172434963 -29893384 + L1MEc LINE L1 201 659 -5737 351 304 0 10 chr4 172435336 172435438 -29892909 - MER5A DNA MER1_type -80 109 9 2136 241 14 35 chr4 172436209 172436785 -29891562 - MER74B LTR ERVL -4 618 55 1988 158 3 0 chr4 172436940 172437244 -29891103 - AluJb SINE Alu -7 305 1 605 157 0 0 chr4 172437548 172437656 -29890691 - L1MA4A LINE L1 -5 6298 6191 2152 181 13 5 chr4 172437662 172438055 -29890292 - MER57A LTR ERV1 -7 396 1 281 188 0 31 chr4 172438066 172438130 -29890217 - MER57A-int LTR ERV1 -43 7494 7433 608 151 111 75 chr4 172438130 172438241 -29890106 - LTR54B LTR ERV1 -223 287 181 236 91 23 0 chr4 172438241 172438285 -29890062 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 608 151 111 75 chr4 172438285 172438441 -29889906 - LTR54B LTR ERV1 -329 181 1 6158 196 39 17 chr4 172438442 172439732 -29888615 - MER57A-int LTR ERV1 -394 7143 5826 2079 167 34 34 chr4 172441700 172442257 -29886090 + MLT2A2 LTR ERVL 1 554 0 1221 285 90 45 chr4 172442514 172444593 -29883754 + L1ME LINE L1 329 2520 -3560 617 156 0 33 chr4 172444593 172444715 -29883632 + L1PA8 LINE L1 6051 6168 -4 1221 285 90 45 chr4 172444715 172445027 -29883320 + L1ME LINE L1 2520 2817 -3263 507 279 44 54 chr4 172445085 172445382 -29882965 + L1ME LINE L1 2937 3230 -2850 1997 148 47 16 chr4 172445429 172445793 -29882554 - THE1C LTR MaLR 0 375 1 9349 126 48 10 chr4 172445793 172447315 -29881032 - THE1C-int LTR MaLR 0 1580 1 2288 113 32 19 chr4 172447315 172447685 -29880662 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr4 172447691 172447714 -29880633 + AT_rich Low_complexity Low_complexity 1 23 0 1537 204 50 42 chr4 172447819 172448179 -29880168 + MLT1B LTR MaLR 6 371 -19 1957 158 119 13 chr4 172448179 172448566 -29879781 + MSTA LTR MaLR 1 428 0 1537 204 50 42 chr4 172448566 172448587 -29879760 + MLT1B LTR MaLR 371 390 0 1738 250 74 14 chr4 172448600 172449179 -29879168 + L1ME1 LINE L1 5548 6161 -5 606 385 38 29 chr4 172449431 172449852 -29878495 - L2 LINE L2 -2 3270 2846 701 198 0 9 chr4 172450381 172450497 -29877850 + FLAM_C SINE Alu 1 115 -28 204 111 0 0 chr4 172450502 172450538 -29877809 + (TAA)n Simple_repeat Simple_repeat 1 36 0 1053 330 13 41 chr4 172451010 172451470 -29876877 + L1PA13 LINE L1 789 1235 -6339 274 304 0 0 chr4 172451746 172451825 -29876522 + L1PA13 LINE L1 2103 2181 -5400 2644 249 17 30 chr4 172452549 172453142 -29875205 + L1PA13 LINE L1 2294 2896 -4688 1325 196 0 109 chr4 172453142 172453473 -29874874 + AluJb SINE Alu 1 295 -7 2644 249 17 30 chr4 172453473 172453787 -29874560 + L1PA13 LINE L1 2896 3213 -4371 8473 229 18 62 chr4 172453814 172456490 -29871857 + L1 LINE L1 3562 6119 -1465 350 258 159 18 chr4 172457036 172457199 -29871148 + MIR SINE MIR 67 252 -10 1403 196 16 60 chr4 172457335 172457717 -29870630 - MLT1A1 LTR MaLR 0 365 1 389 114 0 14 chr4 172457975 172458045 -29870302 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 247 189 14 14 chr4 172458996 172459070 -29869277 + (TA)n Simple_repeat Simple_repeat 2 75 0 1753 212 23 29 chr4 172459429 172459815 -29868532 - MSTD LTR MaLR -12 384 1 238 260 8 8 chr4 172460895 172461018 -29867329 + G-rich Low_complexity Low_complexity 4 126 0 1978 156 0 13 chr4 172461066 172461381 -29866966 + AluSx SINE Alu 1 311 -1 180 0 0 0 chr4 172461521 172461541 -29866806 + (A)n Simple_repeat Simple_repeat 1 20 0 185 226 97 16 chr4 172461554 172461616 -29866731 + MER5C DNA MER1_type 33 99 -225 784 223 179 0 chr4 172461622 172461806 -29866541 + MER58A DNA MER1_type 5 221 -3 336 270 35 17 chr4 172461873 172461988 -29866359 + MER5C DNA MER1_type 208 324 0 1987 148 0 28 chr4 172462427 172462744 -29865603 - AluSx SINE Alu -4 308 1 2253 110 0 7 chr4 172462945 172463255 -29865092 + AluSg SINE Alu 1 308 -2 911 221 34 30 chr4 172463273 172463508 -29864839 + L1MD2 LINE L1 6111 6346 -13 722 310 98 31 chr4 172465350 172465808 -29862539 - L2 LINE L2 -19 3294 2806 3614 191 27 8 chr4 172465821 172466259 -29862088 + L1MA9 LINE L1 5344 5772 -540 234 0 0 0 chr4 172466259 172466285 -29862062 + (TA)n Simple_repeat Simple_repeat 1 26 0 3614 191 27 8 chr4 172466285 172466682 -29861665 + L1MA9 LINE L1 5772 6291 -21 204 250 47 31 chr4 172466708 172466772 -29861575 - L2 LINE L2 -556 2758 2694 261 214 0 0 chr4 172466940 172466996 -29861351 - MLT2B1 LTR ERVL 0 520 465 348 204 71 62 chr4 172467041 172467154 -29861193 - MLT2B1 LTR ERVL -57 463 350 1007 212 17 25 chr4 172467256 172467492 -29860855 + MLT2D LTR ERVL 1 234 -180 876 85 8 39 chr4 172467531 172467660 -29860687 + AluSg/x SINE Alu 164 288 -21 685 316 43 58 chr4 172467702 172468098 -29860249 + MER21B LTR ERV1 320 709 -154 1207 255 54 10 chr4 172468595 172468902 -29859445 + MSTD LTR MaLR 1 324 -72 267 31 0 0 chr4 172468902 172468934 -29859413 + (CA)n Simple_repeat Simple_repeat 1 32 0 6779 123 8 14 chr4 172468940 172469952 -29858395 - L1MA1 LINE L1 -51 6251 5244 1659 199 44 19 chr4 172469952 172470318 -29858029 - THE1C LTR MaLR 0 375 1 6779 123 8 14 chr4 172470318 172470600 -29857747 - L1MA1 LINE L1 -1058 5244 4962 344 176 27 0 chr4 172470602 172470676 -29857671 + MSTD LTR MaLR 319 394 -2 2310 205 63 4 chr4 172471022 172471543 -29856804 - L1MA5 LINE L1 -1 7001 6450 3985 199 22 3 chr4 172471551 172472413 -29855934 - L1MA5 LINE L1 -1849 4999 4122 240 62 167 0 chr4 172472413 172472461 -29855886 - MLT2A1 LTR ERVL 0 444 389 542 61 98 0 chr4 172472466 172472630 -29855717 + (TA)n Simple_repeat Simple_repeat 1 180 0 498 100 76 0 chr4 172472644 172472977 -29855370 + (TA)n Simple_repeat Simple_repeat 1 358 0 23 0 0 0 chr4 172472977 172473000 -29855347 + AT_rich Low_complexity Low_complexity 1 23 0 2882 114 0 2 chr4 172473000 172473405 -29854942 - MLT2A1 LTR ERVL -40 404 1 6116 253 84 36 chr4 172473407 172475706 -29852641 - L1MA5 LINE L1 -2724 4124 1556 1867 149 29 32 chr4 172475706 172476082 -29852265 + THE1C LTR MaLR 1 375 0 6116 253 84 36 chr4 172476082 172477705 -29850642 - L1MA5 LINE L1 -5292 1556 12 258 330 26 70 chr4 172477991 172478218 -29850129 - MIR SINE MIR -14 248 32 269 206 19 75 chr4 172478385 172478492 -29849855 + HAL1 LINE L1 1361 1461 -1046 224 217 0 0 chr4 172479540 172479586 -29848761 + A-rich Low_complexity Low_complexity 4 49 0 5674 176 28 16 chr4 172479621 172481261 -29847086 + L1MA9 LINE L1 4652 6312 0 183 80 0 0 chr4 172481360 172481385 -29846962 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 292 244 0 23 chr4 172481552 172481638 -29846709 + GA-rich Low_complexity Low_complexity 3 86 0 221 244 0 0 chr4 172482460 172482505 -29845842 + CT-rich Low_complexity Low_complexity 4 48 0 603 302 65 16 chr4 172482901 172483146 -29845201 + MLT1J LTR MaLR 24 280 -231 1353 257 99 17 chr4 172483146 172483550 -29844797 + L1MB8 LINE L1 2 438 -6104 393 251 97 17 chr4 172483579 172483754 -29844593 + L1MB8 LINE L1 2218 2406 -4240 2289 77 30 0 chr4 172483899 172484198 -29844149 + AluSc SINE Alu 1 308 -1 24 0 0 0 chr4 172485541 172485565 -29842782 + AT_rich Low_complexity Low_complexity 1 24 0 2490 94 119 5 chr4 172485703 172486105 -29842242 + LTR7 LTR ERV1 1 448 -2 19330 100 35 11 chr4 172486107 172489023 -29839324 + HERVH LTR ERV1 1 2987 -4726 805 176 20 0 chr4 172489017 172489165 -29839182 + HERVH LTR ERV1 3140 3290 -4423 * 3326 111 4 6 chr4 172489155 172489658 -29838689 + HERVH LTR ERV1 3492 3993 -3720 4310 143 0 1 chr4 172489660 172490323 -29838024 + HERVH LTR ERV1 4488 5149 -2564 1364 129 18 5 chr4 172490324 172490541 -29837806 + HERVH LTR ERV1 5600 5819 -1894 * 2280 108 50 16 chr4 172490539 172490918 -29837429 + HERVH LTR ERV1 7322 7713 0 1965 98 31 8 chr4 172490918 172491269 -29837078 + LTR7 LTR ERV1 1 448 -2 31 0 0 0 chr4 172491406 172491437 -29836910 + AT_rich Low_complexity Low_complexity 1 31 0 3652 199 21 50 chr4 172491467 172491881 -29836466 + L1PA11 LINE L1 5230 5654 -520 3872 102 38 20 chr4 172491881 172492480 -29835867 + MER4B LTR ERV1 1 610 0 3652 199 21 50 chr4 172492480 172493003 -29835344 + L1PA11 LINE L1 5654 6126 -48 243 61 0 0 chr4 172493663 172493696 -29834651 + (TA)n Simple_repeat Simple_repeat 2 34 0 680 329 85 41 chr4 172493957 172494368 -29833979 + L2 LINE L2 2836 3264 -49 24 91 0 0 chr4 172494387 172494453 -29833894 + AT_rich Low_complexity Low_complexity 1 66 0 6069 247 78 10 chr4 172494580 172496717 -29831630 + L1MB8 LINE L1 2660 4942 -1702 3229 196 72 44 chr4 172496761 172497841 -29830506 + L1MB8 LINE L1 5558 6675 -1 1127 263 68 46 chr4 172497834 172498569 -29829778 + L1ME3 LINE L1 3837 4587 -1559 * 420 294 79 31 chr4 172498571 172499416 -29828931 + L1ME3 LINE L1 5263 6155 -7 1885 128 13 42 chr4 172502121 172502297 -29826050 - AluSx SINE Alu -8 304 139 2791 7 0 0 chr4 172502297 172502604 -29825743 - AluYa5 SINE Alu -4 307 1 1885 128 13 42 chr4 172502604 172502740 -29825607 - AluSx SINE Alu -173 139 1 3207 146 74 22 chr4 172503350 172503440 -29824907 - LTR9 LTR ERV1 0 612 528 303 28 0 0 chr4 172503440 172503476 -29824871 + (TG)n Simple_repeat Simple_repeat 2 37 0 1757 107 3 74 chr4 172503476 172503775 -29824572 - AluSc SINE Alu -28 281 4 3207 146 74 22 chr4 172503775 172504265 -29824082 - LTR9 LTR ERV1 -83 529 1 1335 224 81 3 chr4 172505339 172505647 -29822700 - MLT1A1 LTR MaLR 0 365 34 827 111 0 8 chr4 172505647 172505773 -29822574 - AluSg/x SINE Alu -25 285 161 326 200 0 0 chr4 172505773 172505828 -29822519 - Alu SINE Alu -247 56 2 323 265 0 0 chr4 172505830 172505898 -29822449 - MER5B DNA MER1_type -101 77 10 258 326 93 17 chr4 172506105 172506396 -29821951 - L1M4 LINE L1 -1870 4276 3964 201 200 33 44 chr4 172506437 172506527 -29821820 + T-rich Low_complexity Low_complexity 3 91 0 23 33 0 0 chr4 172506665 172506695 -29821652 + AT_rich Low_complexity Low_complexity 1 30 0 264 241 99 21 chr4 172506727 172506868 -29821479 - L1MC5 LINE L1 -26 7935 7784 205 165 50 74 chr4 172507108 172507229 -29821118 + (TTATA)n Simple_repeat Simple_repeat 2 119 0 363 226 158 80 chr4 172507296 172507632 -29820715 - L1MC5 LINE L1 -298 7663 7302 1003 255 55 79 chr4 172507768 172508402 -29819945 - L1MC4 LINE L1 -736 7225 6634 2326 94 0 0 chr4 172508680 172508988 -29819359 - AluY SINE Alu -3 308 1 1303 282 110 52 chr4 172509084 172509850 -29818497 - L1MCc LINE L1 -4948 1475 666 304 325 39 0 chr4 172509917 172510071 -29818276 - L1MEd LINE L1 -5359 760 601 194 330 93 0 chr4 172510362 172510459 -29817888 - MIR SINE MIR -56 206 101 821 297 64 76 chr4 172511045 172511517 -29816830 - MLT1J LTR MaLR -41 470 5 2285 101 0 15 chr4 172512567 172512894 -29815453 + MLT2A1 LTR ERVL 123 444 0 216 184 0 0 chr4 172512897 172512935 -29815412 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 2013 135 7 0 chr4 172514271 172514574 -29813773 + AluSx SINE Alu 1 305 -7 5735 132 185 88 chr4 172515878 172517426 -29810921 + pTR5 LTR ERV1 741 2438 0 207 195 0 0 chr4 172518125 172518166 -29810181 + A-rich Low_complexity Low_complexity 5 45 0 619 38 13 0 chr4 172519114 172519193 -29809154 - MADE1 DNA Mariner 0 80 1 330 301 26 88 chr4 172519400 172519593 -29808754 - HAL1 LINE L1 -57 2450 2270 310 310 61 80 chr4 172520007 172520220 -29808127 + MLT1J LTR MaLR 229 437 -74 2238 110 0 10 chr4 172520221 172520531 -29807816 + AluSg SINE Alu 1 307 -3 586 304 54 0 chr4 172521202 172521370 -29806977 - MIR SINE MIR -73 189 13 2238 89 4 0 chr4 172521712 172521993 -29806354 + AluSg SINE Alu 1 282 -28 375 39 19 0 chr4 172521993 172522045 -29806302 + (TAA)n Simple_repeat Simple_repeat 2 180 0 1314 183 97 59 chr4 172522730 172523019 -29805328 - AluJo SINE Alu -2 300 1 2223 82 0 7 chr4 172523601 172523917 -29804430 - AluY SINE Alu 0 311 1 31 88 0 0 chr4 172524648 172524728 -29803619 + AT_rich Low_complexity Low_complexity 1 80 0 23 0 0 0 chr4 172524806 172524829 -29803518 + AT_rich Low_complexity Low_complexity 1 23 0 330 322 70 37 chr4 172524931 172525173 -29803174 - HAL1 LINE L1 -835 1672 1423 209 93 70 0 chr4 172525347 172525390 -29802957 + (TA)n Simple_repeat Simple_repeat 1 46 0 198 0 0 0 chr4 172525390 172525412 -29802935 + (TG)n Simple_repeat Simple_repeat 1 22 0 400 286 71 26 chr4 172526441 172526595 -29801752 + L2 LINE L2 3153 3313 0 207 309 136 0 chr4 172527233 172527314 -29801033 - L2 LINE L2 -18 3254 3163 2235 99 0 3 chr4 172527993 172528287 -29800060 + AluSq SINE Alu 1 293 -20 5268 139 24 23 chr4 172528654 172529604 -29798743 + L1MA7 LINE L1 5341 6291 0 32 67 0 0 chr4 172529944 172530004 -29798343 + AT_rich Low_complexity Low_complexity 1 60 0 25201 74 14 4 chr4 172530889 172534160 -29794187 + HERVL-A1 LTR ERVL 2353 5654 0 2893 82 43 36 chr4 172534160 172534601 -29793746 + MLT2A1 LTR ERVL 1 444 0 301 259 86 43 chr4 172534639 172534755 -29793592 - MIR SINE MIR -30 232 112 194 220 17 0 chr4 172535405 172535464 -29792883 + GA-rich Low_complexity Low_complexity 5 64 0 2228 113 3 0 chr4 172536287 172536597 -29791750 - AluSx SINE Alu -1 311 1 414 69 0 0 chr4 172538657 172538715 -29789632 + (ATG)n Simple_repeat Simple_repeat 2 59 0 601 265 55 45 chr4 172539031 172539340 -29789007 - L1MC4 LINE L1 -190 7852 7541 58 28 0 0 chr4 172539812 172539884 -29788463 + AT_rich Low_complexity Low_complexity 1 72 0 255 72 15 103 chr4 172540420 172540615 -29787732 + (TA)n Simple_repeat Simple_repeat 2 179 0 336 267 93 13 chr4 172541142 172541292 -29787055 + Charlie8 DNA MER1_type 56 217 -2200 31 44 0 0 chr4 172542371 172542416 -29785931 + AT_rich Low_complexity Low_complexity 1 45 0 440 348 103 40 chr4 172542636 172543266 -29785081 + L2 LINE L2 2146 2815 -499 1511 207 7 23 chr4 172543505 172543810 -29784537 + AluJo SINE Alu 3 302 -10 666 216 26 20 chr4 172544285 172544438 -29783909 - LTR45 LTR ERV1 0 525 372 1948 96 3 80 chr4 172545063 172545376 -29782971 - AluSc SINE Alu -20 289 1 1362 209 41 43 chr4 172545384 172545753 -29782594 + MLT1A2 LTR MaLR 3 370 -4 766 226 10 41 chr4 172545932 172546127 -29782220 - AluJo SINE Alu -97 215 27 576 130 43 7 chr4 172546984 172547122 -29781225 + CT-rich Low_complexity Low_complexity 2 144 0 1820 189 3 15 chr4 172547195 172547533 -29780814 + MLT1A1 LTR MaLR 25 358 -7 611 245 0 20 chr4 172547642 172547746 -29780601 - Tigger3(Golem) DNA MER2_type -2 3027 2925 1717 174 56 12 chr4 172547746 172548068 -29780279 + MER1B DNA MER1_type 1 336 -1 611 245 0 20 chr4 172548068 172548114 -29780233 - Tigger3(Golem) DNA MER2_type -104 2925 2880 1430 178 8 19 chr4 172548121 172548380 -29779967 + MSTA LTR MaLR 173 428 0 283 288 0 0 chr4 172548380 172548439 -29779908 - Tigger3(Golem) DNA MER2_type -2970 59 1 23 0 0 0 chr4 172548611 172548634 -29779713 + AT_rich Low_complexity Low_complexity 1 23 0 2266 93 0 7 chr4 172549002 172549302 -29779045 + AluSp SINE Alu 11 308 -5 879 222 61 56 chr4 172549514 172549745 -29778602 + MLT2F LTR ERVL 72 300 -363 2237 99 0 13 chr4 172549745 172550048 -29778299 + AluSx SINE Alu 1 299 -13 879 222 61 56 chr4 172550048 172550243 -29778104 + MLT2F LTR ERVL 300 605 -58 223 28 56 0 chr4 172550243 172550279 -29778068 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 22 35 0 0 chr4 172550375 172550404 -29777943 + AT_rich Low_complexity Low_complexity 1 29 0 295 376 96 19 chr4 172550461 172550876 -29777471 - L2 LINE L2 -1332 1982 1536 2297 79 0 0 chr4 172551325 172551605 -29776742 + AluY SINE Alu 5 284 -27 23 33 0 0 chr4 172552498 172552528 -29775819 + AT_rich Low_complexity Low_complexity 1 30 0 278 331 98 15 chr4 172552718 172552851 -29775496 + L2 LINE L2 3129 3272 0 1249 237 29 59 chr4 172552897 172552924 -29775423 - MER39 LTR ERV1 -2 705 679 2353 136 81 0 chr4 172552924 172553320 -29775027 + MSTA LTR MaLR 1 428 0 1249 237 29 59 chr4 172553320 172553701 -29774646 - MER39 LTR ERV1 -28 679 309 240 252 251 4 chr4 172553743 172553840 -29774507 - MER34 LTR ERV1 -428 114 6 2676 142 28 26 chr4 172554625 172555091 -29773256 + LTR24 LTR ERV1 1 467 0 1262 187 64 49 chr4 172555123 172555586 -29772761 + LTR24-int LTR ERV1 34 652 -4471 325 332 153 30 chr4 172555607 172555875 -29772472 + MER4B-int LTR ERV1 379 679 -6079 292 222 22 44 chr4 172555893 172555983 -29772364 + MER4B-int LTR ERV1 658 745 -4378 21 36 0 0 chr4 172556635 172556663 -29771684 + AT_rich Low_complexity Low_complexity 1 28 0 4635 181 47 7 chr4 172556663 172557674 -29770673 - L1 LINE L1 -1240 4906 3856 1392 154 9 13 chr4 172557675 172557908 -29770439 + Tigger1 DNA MER2_type 3 234 -2184 4838 179 7 5 chr4 172557909 172558765 -29769582 + Tigger1 DNA MER2_type 1561 2418 0 551 175 90 42 chr4 172558765 172558954 -29769393 - L1 LINE L1 -2288 3858 3661 * 1892 184 0 6 chr4 172558952 172559310 -29769037 + L1MA8 LINE L1 4920 5275 -871 1196 190 74 11 chr4 172559308 172559592 -29768755 + L1MA8 LINE L1 5990 6291 0 * 22 35 0 0 chr4 172559796 172559825 -29768522 + AT_rich Low_complexity Low_complexity 1 29 0 2047 115 0 75 chr4 172559986 172560317 -29768030 + AluSg SINE Alu 1 306 -4 232 271 229 8 chr4 172561748 172561866 -29766481 + MLT1H LTR MaLR 398 541 -8 362 318 87 6 chr4 172561873 172562046 -29766301 + L2 LINE L2 3126 3312 -1 341 279 120 38 chr4 172562132 172562290 -29766057 + MIR SINE MIR 61 231 -31 1724 151 14 7 chr4 172562443 172562745 -29765602 + AluSx SINE Alu 3 306 0 6465 67 6 5 chr4 172563426 172564266 -29764081 - L1PA7 LINE L1 -1 6153 5313 * 21723 105 24 1 chr4 172564264 172567524 -29760823 + L1PA7 LINE L1 1962 5295 -851 1697 132 46 58 chr4 172567745 172568071 -29760276 - MER44D DNA MER2_type -17 592 1 22 0 0 0 chr4 172568318 172568340 -29760007 + AT_rich Low_complexity Low_complexity 1 22 0 1408 247 18 9 chr4 172568461 172568862 -29759485 - LTR40b LTR ERVL -4 458 1 194 324 147 29 chr4 172569032 172569168 -29759179 - L2 LINE L2 -1 3312 3161 23 33 0 0 chr4 172569199 172569229 -29759118 + AT_rich Low_complexity Low_complexity 1 30 0 275 222 0 0 chr4 172569282 172569336 -29759011 + MLT1G LTR MaLR 220 273 -317 2415 52 0 55 chr4 172569607 172569934 -29758413 + AluY SINE Alu 1 309 -2 2130 239 25 9 chr4 172569980 172570533 -29757814 - MER68 LTR ERV1 0 562 1 702 329 64 40 chr4 172570770 172571269 -29757078 - LTR33 LTR ERVL 0 521 11 252 398 58 11 chr4 172571729 172571920 -29756427 + MIR3 SINE MIR 8 207 -1 421 315 62 65 chr4 172572546 172572838 -29755509 - L2 LINE L2 -611 2703 2413 827 295 29 8 chr4 172573063 172573307 -29755040 + MIR SINE MIR 13 261 -1 486 335 39 15 chr4 172574925 172575128 -29753219 - MIR SINE MIR -12 250 43 188 152 87 22 chr4 172576075 172576121 -29752226 - L3b LINE CR1 -3 1580 1532 401 247 126 49 chr4 172578062 172578309 -29750038 + L1ME3A LINE L1 5691 5956 -214 22 0 0 0 chr4 172579009 172579031 -29749316 + AT_rich Low_complexity Low_complexity 1 22 0 2422 63 0 3 chr4 172579037 172579337 -29749010 + AluY SINE Alu 1 299 -12 3039 164 19 49 chr4 172579346 172580015 -29748332 + L1MA7 LINE L1 5633 6281 -10 1657 97 4 4 chr4 172580263 172580511 -29747836 + L1PA13 LINE L1 5913 6160 -3 519 163 0 136 chr4 172582158 172582305 -29746042 - LTR40a LTR ERVL -392 127 1 522 302 11 109 chr4 172582774 172583039 -29745308 - MIR SINE MIR 0 262 24 23 33 0 0 chr4 172583676 172583706 -29744641 + AT_rich Low_complexity Low_complexity 1 30 0 193 355 9 27 chr4 172584099 172584209 -29744138 + MER5A DNA MER1_type 58 165 -24 630 244 0 0 chr4 172584636 172584763 -29743584 + AluJo SINE Alu 3 129 -183 197 98 24 0 chr4 172584781 172584822 -29743525 + (TA)n Simple_repeat Simple_repeat 2 43 0 898 209 18 0 chr4 172584825 172584988 -29743359 + AluJo SINE Alu 132 297 -15 252 0 0 0 chr4 172585464 172585492 -29742855 + (A)n Simple_repeat Simple_repeat 1 28 0 1186 314 40 47 chr4 172588352 172588945 -29739402 - HERVL LTR ERVL -3449 1547 959 680 264 112 4 chr4 172588987 172589229 -29739118 - HERVL LTR ERVL -4152 844 577 211 371 50 70 chr4 172589623 172589925 -29738422 + L2 LINE L2 2968 3263 -9 237 163 0 0 chr4 172590487 172590536 -29737811 + (TATG)n Simple_repeat Simple_repeat 4 52 0 433 310 76 46 chr4 172594854 172595051 -29733296 + MIR SINE MIR 47 249 -13 222 197 14 42 chr4 172595169 172595240 -29733107 + GA-rich Low_complexity Low_complexity 2 70 0 2289 215 21 70 chr4 172595283 172595952 -29732395 - MER92B LTR ERV1 0 636 1 22 35 0 0 chr4 172596483 172596512 -29731835 + AT_rich Low_complexity Low_complexity 1 29 0 1476 203 44 30 chr4 172596672 172596967 -29731380 + AluJo SINE Alu 1 299 -13 344 22 22 0 chr4 172596971 172597016 -29731331 + (GGAA)n Simple_repeat Simple_repeat 2 47 0 288 305 150 20 chr4 172597055 172597255 -29731092 - HAL1 LINE L1 -590 1917 1692 286 309 21 0 chr4 172598033 172598127 -29730220 + L2 LINE L2 3216 3311 -2 640 290 104 53 chr4 172598705 172599178 -29729169 - LTR33 LTR ERVL -7 514 18 1333 329 41 30 chr4 172599233 172599939 -29728408 - HERVL LTR ERVL -2504 3150 2437 3596 122 51 31 chr4 172600168 172601137 -29727210 + MER11A LTR ERVK 1 1071 0 45 45 0 0 chr4 172601437 172601503 -29726844 + AT_rich Low_complexity Low_complexity 1 66 0 1867 145 25 0 chr4 172601686 172601968 -29726379 - AluSx SINE Alu -23 289 1 23 33 0 0 chr4 172603157 172603187 -29725160 + AT_rich Low_complexity Low_complexity 1 30 0 1781 156 7 10 chr4 172604415 172604710 -29723637 - AluSx SINE Alu -18 294 1 2200 82 6 35 chr4 172604774 172605089 -29723258 - AluSc SINE Alu -1 308 3 255 179 0 0 chr4 172605122 172605189 -29723158 + T-rich Low_complexity Low_complexity 1 67 0 28 71 0 0 chr4 172605369 172605425 -29722922 + AT_rich Low_complexity Low_complexity 1 56 0 2046 141 3 0 chr4 172605591 172605888 -29722459 + AluSx SINE Alu 1 298 -14 347 309 74 6 chr4 172606085 172606247 -29722100 + MIR SINE MIR 54 226 -36 533 305 19 38 chr4 172606336 172606546 -29721801 + MIR SINE MIR 1 206 -56 24 67 0 0 chr4 172606592 172606637 -29721710 + AT_rich Low_complexity Low_complexity 1 45 0 826 250 79 8 chr4 172607524 172607764 -29720583 + MIR SINE MIR 5 261 -1 298 353 25 8 chr4 172607914 172608033 -29720314 + L2 LINE L2 2592 2712 -602 1948 111 47 4 chr4 172608036 172608315 -29720032 + AluSx SINE Alu 1 291 -21 180 77 0 0 chr4 172608440 172608466 -29719881 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr4 172610054 172610076 -29718271 + AT_rich Low_complexity Low_complexity 1 22 0 660 340 61 17 chr4 172610076 172610397 -29717950 - L2 LINE L2 0 3313 3008 1569 182 17 17 chr4 172610397 172610688 -29717659 + AluJb SINE Alu 5 295 -17 2079 135 0 0 chr4 172610690 172610987 -29717360 + AluSx SINE Alu 1 297 -15 660 340 61 17 chr4 172610987 172611138 -29717209 - L2 LINE L2 -305 3008 2817 672 283 71 81 chr4 172611159 172611568 -29716779 - L2 LINE L2 -303 3010 2605 286 346 162 13 chr4 172612397 172612625 -29715722 + MIR SINE MIR 1 262 0 1710 166 118 18 chr4 172613541 172613872 -29714475 + THE1B LTR MaLR 1 364 0 24 32 0 0 chr4 172614412 172614443 -29713904 + AT_rich Low_complexity Low_complexity 1 31 0 22 106 0 0 chr4 172614663 172614748 -29713599 + AT_rich Low_complexity Low_complexity 1 85 0 1752 190 0 0 chr4 172614755 172615055 -29713292 + AluSx SINE Alu 1 300 -12 327 49 0 0 chr4 172617701 172617742 -29710605 + (TA)n Simple_repeat Simple_repeat 1 41 0 189 0 0 0 chr4 172617741 172617762 -29710585 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 1631 99 160 153 chr4 172618691 172619398 -29708949 - LTR12 LTR ERV1 -132 2021 1 240 186 0 0 chr4 172619438 172619481 -29708866 - LTR30 LTR ERV1 -679 43 1 1688 222 58 31 chr4 172619853 172620303 -29708044 + LTR40b LTR ERVL 1 462 0 472 264 52 46 chr4 172620921 172621095 -29707252 + LTR33 LTR ERVL 1 175 -346 575 267 74 0 chr4 172621196 172621372 -29706975 + LTR33 LTR ERVL 333 521 0 354 298 11 0 chr4 172621395 172621489 -29706858 - MIR SINE MIR -110 152 58 2362 155 53 42 chr4 172623211 172623683 -29704664 + MER31A LTR ERV1 1 477 -8 226 132 38 0 chr4 172623837 172623890 -29704457 + (TA)n Simple_repeat Simple_repeat 1 55 0 2085 99 7 7 chr4 172625286 172625589 -29702758 + AluSp SINE Alu 1 303 -10 324 109 0 0 chr4 172626212 172626258 -29702089 - MER66B LTR ERV1 -142 344 299 29 0 0 0 chr4 172626359 172626388 -29701959 + AT_rich Low_complexity Low_complexity 1 29 0 26 82 0 0 chr4 172627453 172627514 -29700833 + AT_rich Low_complexity Low_complexity 1 61 0 315 258 8 16 chr4 172627900 172628024 -29700323 - MER113 DNA MER1_type? -398 123 1 372 296 173 0 chr4 172628523 172628702 -29699645 + MIR SINE MIR 1 210 -52 855 316 148 14 chr4 172628751 172629245 -29699102 - L2 LINE L2 -5 3308 2767 1582 298 108 19 chr4 172629494 172630171 -29698176 - L1M2b LINE L1 -6472 737 1 285 184 66 40 chr4 172631696 172631772 -29696575 - MER53 DNA DNA -3 186 109 280 200 59 24 chr4 172631700 172631785 -29696562 + MER53 DNA DNA 17 104 -85 * 342 240 41 25 chr4 172631845 172631966 -29696381 - MER53 DNA DNA -65 124 2 358 353 20 0 chr4 172632028 172632130 -29696217 + MIR SINE MIR 36 139 -69 3882 46 25 2 chr4 172632247 172632726 -29695621 - LTR2B LTR ERV1 0 490 1 352 213 52 109 chr4 172632744 172632948 -29695399 - MIR SINE MIR -34 228 39 27 29 0 0 chr4 172635499 172635533 -29692814 + AT_rich Low_complexity Low_complexity 1 34 0 1356 157 48 31 chr4 172635686 172635980 -29692367 - L1MA9 LINE L1 -2 6310 6012 2106 119 0 3 chr4 172636013 172636320 -29692027 - AluSq SINE Alu 0 308 3 227 351 30 22 chr4 172636927 172637061 -29691286 - L2 LINE L2 -465 2849 2715 207 88 29 0 chr4 172637390 172637424 -29690923 + (TC)n Simple_repeat Simple_repeat 2 36 0 241 154 0 19 chr4 172637774 172637826 -29690521 + L1MC4 LINE L1 6653 6703 -1339 633 255 21 7 chr4 172638405 172638550 -29689797 - FRAM SINE Alu -30 146 1 252 328 9 78 chr4 172638583 172638699 -29689648 + L2 LINE L2 3190 3297 -16 1130 258 143 21 chr4 172639280 172639664 -29688683 - MLT1D LTR MaLR 0 505 75 459 0 0 0 chr4 172639972 172640023 -29688324 + (TG)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr4 172640095 172640116 -29688231 + AT_rich Low_complexity Low_complexity 1 21 0 245 292 22 11 chr4 172641071 172641160 -29687187 - MIR SINE MIR 0 262 173 894 179 43 27 chr4 172642547 172642731 -29685616 - MER20 DNA MER1_type 0 219 33 21 36 0 0 chr4 172643119 172643147 -29685200 + AT_rich Low_complexity Low_complexity 1 28 0 1024 199 38 0 chr4 172644561 172644772 -29683575 + L1MC2 LINE L1 6118 6336 -8 520 323 30 8 chr4 172645123 172645358 -29682989 + L1MEc LINE L1 50 289 -6107 287 274 26 0 chr4 172645356 172645473 -29682874 + L1MEc LINE L1 2628 2747 -3468 * 11215 186 32 12 chr4 172645507 172650245 -29678102 + L1PB1 LINE L1 3 5095 -1767 207 0 0 0 chr4 172650245 172650268 -29678079 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 11215 186 32 12 chr4 172650268 172650635 -29677712 + L1PB1 LINE L1 5095 5453 -1409 3960 87 28 3 chr4 172650630 172651205 -29677142 + L1PB1 LINE L1 5995 6583 -284 * 472 220 79 45 chr4 172651204 172651381 -29676966 - L1ME3A LINE L1 -276 5894 5712 * 329 290 5 75 chr4 172651436 172651622 -29676725 - L1M4 LINE L1 -2495 3651 3479 198 0 0 0 chr4 172652373 172652395 -29675952 + (CA)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr4 172652493 172652514 -29675833 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 172653088 172653116 -29675231 + AT_rich Low_complexity Low_complexity 1 28 0 474 41 0 41 chr4 172653148 172653221 -29675126 - L1PA3 LINE L1 -2 6153 6084 272 30 0 0 chr4 172653221 172653254 -29675093 + L1PA5 LINE L1 6046 6078 -76 24 0 0 0 chr4 172653255 172653279 -29675068 + AT_rich Low_complexity Low_complexity 1 24 0 7753 17 0 0 chr4 172653675 172655208 -29673139 - L1PA3 LINE L1 0 6155 4623 274 350 0 64 chr4 172655977 172656180 -29672167 - MIR SINE MIR -56 206 17 24 0 0 0 chr4 172657251 172657275 -29671072 + AT_rich Low_complexity Low_complexity 1 24 0 661 316 81 49 chr4 172657406 172657636 -29670711 - ERVL LTR ERVL -1133 4631 4410 760 243 6 11 chr4 172657636 172657813 -29670534 - MER45A DNA AcHobo 0 178 3 661 316 81 49 chr4 172657813 172658054 -29670293 - ERVL LTR ERVL -1354 4410 4145 375 169 54 24 chr4 172658217 172658317 -29670030 + MLT1F LTR MaLR 410 542 0 187 179 313 0 chr4 172658403 172658470 -29669877 - L2 LINE L2 -83 3230 3143 2383 88 0 0 chr4 172658739 172659046 -29669301 + AluSx SINE Alu 3 309 -3 226 287 23 62 chr4 172659691 172659820 -29668527 - MIR SINE MIR -49 213 90 2419 64 3 0 chr4 172659901 172660199 -29668148 + AluY SINE Alu 1 299 -12 310 129 24 94 chr4 172661767 172661852 -29666495 + MADE1 DNA Mariner 2 80 0 3753 145 19 17 chr4 172662207 172662850 -29665497 + LTR48B LTR ERV1 1 644 0 1910 123 7 11 chr4 172663306 172663583 -29664764 + AluSx SINE Alu 31 306 -6 241 388 0 0 chr4 172663747 172663832 -29664515 - L2 LINE L2 0 3313 3229 1780 248 74 23 chr4 172665052 172665799 -29662548 + L1M4 LINE L1 2897 3681 -2465 3012 150 28 9 chr4 172665804 172666119 -29662228 - MER34B LTR ERV1 0 565 257 1992 182 14 84 chr4 172666119 172666286 -29662061 - MSTB2 LTR MaLR 0 457 280 1486 156 0 0 chr4 172666286 172666511 -29661836 + AluSq SINE Alu 1 225 -88 1992 182 14 84 chr4 172666511 172666524 -29661823 - MSTB2 LTR MaLR -177 280 268 195 69 0 0 chr4 172666524 172666553 -29661794 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1992 182 14 84 chr4 172666553 172666861 -29661486 - MSTB2 LTR MaLR -189 268 2 3012 150 28 9 chr4 172666861 172667077 -29661270 - MER34B LTR ERV1 -308 257 24 999 181 83 91 chr4 172717108 172717317 -29611030 - LTR48 LTR ERV1 -488 299 91 2329 122 0 0 chr4 172717317 172717629 -29610718 - AluSx SINE Alu 0 312 1 999 181 83 91 chr4 172717629 172717684 -29610663 - LTR48 LTR ERV1 -696 91 37 639 114 83 53 chr4 172717787 172717899 -29610448 + MLT1B LTR MaLR 1 119 -271 1891 154 26 32 chr4 172717899 172718276 -29610071 + THE1C LTR MaLR 1 375 0 639 114 83 53 chr4 172718276 172718295 -29610052 + MLT1B LTR MaLR 119 136 -254 775 131 23 8 chr4 172718395 172718525 -29609822 + HERVH LTR ERV1 3159 3290 -4423 * 2813 121 7 2 chr4 172718524 172718953 -29609394 + HERVH LTR ERV1 3500 3930 -3783 424 143 63 0 chr4 172718957 172719020 -29609327 + HERVH LTR ERV1 5753 5819 -1894 2491 97 46 0 chr4 172719020 172719393 -29608954 + HERVH LTR ERV1 7324 7713 0 904 90 101 13 chr4 172719393 172719551 -29608796 + LTR7 LTR ERV1 1 218 -232 509 214 97 0 chr4 172720120 172720265 -29608082 + MIR SINE MIR 71 229 -33 200 275 0 0 chr4 172720267 172720336 -29608011 + T-rich Low_complexity Low_complexity 2 70 0 1047 199 11 0 chr4 172720402 172720578 -29607769 - LTR19C LTR ERV1 0 779 602 * 2001 120 21 3 chr4 172720575 172720866 -29607481 - LTR19C LTR ERV1 -483 296 1 1105 211 16 45 chr4 172720869 172721134 -29607213 - HUERS-P3 LTR ERV1 0 8919 7157 323 278 24 24 chr4 172721267 172721405 -29606942 - HERV9 LTR ERV1 -445 7954 4283 14569 148 29 3 chr4 172722528 172724792 -29603555 - HERV9 LTR ERV1 -2028 6891 4571 8264 145 23 1 chr4 172724791 172726129 -29602218 - HERV9 LTR ERV1 -4491 4428 3061 * 1248 132 0 0 chr4 172726125 172726314 -29602033 - HERV9 LTR ERV1 -6246 2673 2485 * 2422 129 34 12 chr4 172726414 172726832 -29601515 - LTR19C LTR ERV1 -352 427 1 786 295 118 23 chr4 172727785 172728346 -29600001 - L2 LINE L2 0 3313 2707 2468 166 122 2 chr4 172728464 172728971 -29599376 - LTR69 LTR ERVL -17 571 4 280 278 11 40 chr4 172729413 172729589 -29598758 + GA-rich Low_complexity Low_complexity 4 174 0 256 203 0 17 chr4 172729831 172729890 -29598457 - MARNA DNA Mariner -149 437 380 2273 110 0 0 chr4 172730047 172730339 -29598008 + AluSx SINE Alu 1 292 -20 12491 153 54 11 chr4 172730364 172732682 -29595665 - Tigger1 DNA MER2_type 0 2418 1 1052 173 22 27 chr4 172732803 172733028 -29595319 - MER2 DNA MER2_type -1 344 121 304 154 31 0 chr4 172733020 172733085 -29595262 + MLT1A1 LTR MaLR 86 152 -213 * 3967 122 0 0 chr4 172733294 172733895 -29594452 + HERVH LTR ERV1 4549 5149 -2564 2327 139 26 5 chr4 172733886 172734304 -29594043 + HERVH LTR ERV1 5590 6016 -1697 * 3357 98 14 35 chr4 172734297 172734866 -29593481 + HERVH LTR ERV1 7157 7713 0 2502 115 51 16 chr4 172734866 172735301 -29593046 + LTR7 LTR ERV1 1 450 0 25 0 0 0 chr4 172737107 172737132 -29591215 + AT_rich Low_complexity Low_complexity 1 25 0 3828 208 33 21 chr4 172737282 172738457 -29589890 - L1MD1 LINE L1 -82 6554 5358 343 264 0 0 chr4 172738455 172738561 -29589786 - L1MD1 LINE L1 -1403 5137 5032 * 555 150 18 44 chr4 172738592 172738705 -29589642 - FRAM SINE Alu 0 176 67 1603 224 0 90 chr4 172738711 172738846 -29589501 - L1M4 LINE L1 -947 5199 5053 1944 88 42 25 chr4 172738846 172739129 -29589218 + AluSg SINE Alu 1 288 -22 1603 224 0 90 chr4 172739129 172739561 -29588786 - L1M4 LINE L1 -1093 5053 4683 * 2403 239 149 35 chr4 172739560 172740495 -29587852 - L1MD1 LINE L1 -5179 1361 321 180 77 0 0 chr4 172740948 172740974 -29587373 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 233 196 0 0 chr4 172741036 172741082 -29587265 + C-rich Low_complexity Low_complexity 2 47 0 24 32 0 0 chr4 172741323 172741354 -29586993 + AT_rich Low_complexity Low_complexity 1 31 0 1858 157 29 10 chr4 172742700 172743006 -29585341 - AluJo SINE Alu 0 312 1 324 383 62 48 chr4 172743349 172743707 -29584640 + L2 LINE L2 2909 3271 -1 1523 143 116 81 chr4 172743913 172744346 -29584001 + LTR7 LTR ERV1 1 448 -2 13919 91 16 27 chr4 172744348 172747076 -29581271 + HERVH LTR ERV1 1 2844 -4869 23 54 0 0 chr4 172747267 172747304 -29581043 + AT_rich Low_complexity Low_complexity 1 37 0 479 248 116 34 chr4 172747304 172747691 -29580656 - Charlie7 DNA MER1_type -31 2581 2163 9068 178 31 61 chr4 172747691 172748541 -29579806 + L1M4 LINE L1 32 906 -6659 2274 64 3 14 chr4 172748541 172748836 -29579511 - AluSp SINE Alu -21 292 1 9068 178 31 61 chr4 172748836 172751580 -29576767 + L1M4 LINE L1 906 4626 -2939 285 291 0 112 chr4 172751796 172751930 -29576417 - MER5A DNA MER1_type -14 175 57 2931 230 112 8 chr4 172753417 172754170 -29574177 - MER21B LTR ERV1 -32 831 1 722 156 16 0 chr4 172754173 172754295 -29574052 + MLT1B LTR MaLR 267 390 0 480 314 54 49 chr4 172754296 172754685 -29573662 + L1M4 LINE L1 5512 5902 -1663 932 69 92 86 chr4 172754707 172754881 -29573466 + MER4A LTR ERV1 1 175 -489 1777 123 91 3 chr4 172754897 172755182 -29573165 + MER4A LTR ERV1 355 664 0 610 303 59 20 chr4 172755182 172755591 -29572756 + L1M4 LINE L1 5930 6354 -1211 1687 181 10 0 chr4 172755703 172756001 -29572346 + AluJb SINE Alu 1 301 -11 2344 79 0 0 chr4 172756018 172756310 -29572037 + AluSg SINE Alu 1 292 -18 1302 223 99 51 chr4 172756615 172757217 -29571130 + MLT1E2 LTR MaLR 1 626 0 255 157 0 0 chr4 172758418 172758469 -29569878 + (TG)n Simple_repeat Simple_repeat 2 52 0 581 291 111 64 chr4 172759181 172759604 -29568743 + LTR16A LTR ERVL 7 449 -1 935 182 0 0 chr4 172759805 172759970 -29568377 - AluJo SINE Alu -19 293 129 756 87 17 35 chr4 172759974 172760089 -29568258 + AluSg/x SINE Alu 177 289 -20 588 227 16 0 chr4 172760089 172760217 -29568130 - AluJo SINE Alu -172 130 1 207 0 0 0 chr4 172760670 172760693 -29567654 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 1343 139 11 33 chr4 172761146 172761419 -29566928 + Tigger3b DNA MER2_type 132 398 -833 * 2015 132 330 10 chr4 172761411 172761927 -29566420 + Tigger3b DNA MER2_type 551 1231 -1 1443 207 19 41 chr4 172761929 172762113 -29566234 + L1MC1 LINE L1 5924 6098 -235 1939 189 17 8 chr4 172762113 172762473 -29565874 - MLT1A1 LTR MaLR -2 363 1 1443 207 19 41 chr4 172762473 172762651 -29565696 + L1MC1 LINE L1 6098 6278 -55 246 245 0 0 chr4 172762692 172762745 -29565602 - MER5B DNA MER1_type -124 54 2 303 309 130 5 chr4 172762822 172763029 -29565318 - L2 LINE L2 -665 2649 2417 1377 286 35 2 chr4 172763071 172763560 -29564787 + MER90 LTR ERV1 98 602 -12 343 234 91 19 chr4 172764069 172764223 -29564124 - L1MC/D LINE L1 -2057 5751 5587 201 182 0 23 chr4 172764714 172764758 -29563589 + GA-rich Low_complexity Low_complexity 1 43 0 210 228 8 16 chr4 172764844 172764967 -29563380 + GA-rich Low_complexity Low_complexity 1 122 0 22 0 0 0 chr4 172765772 172765794 -29562553 + AT_rich Low_complexity Low_complexity 1 22 0 1052 92 8 0 chr4 172765899 172766030 -29562317 - AluSg/x SINE Alu -63 249 118 26 64 0 0 chr4 172766227 172766274 -29562073 + AT_rich Low_complexity Low_complexity 1 47 0 1999 125 7 20 chr4 172767578 172767883 -29560464 + AluSq SINE Alu 1 301 -12 613 114 6 171 chr4 172768257 172768415 -29559932 + FLAM_C SINE Alu 1 132 -1 32 43 0 0 chr4 172768483 172768529 -29559818 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr4 172768928 172768950 -29559397 + AT_rich Low_complexity Low_complexity 1 22 0 344 260 0 52 chr4 172769095 172769191 -29559156 - L2 LINE L2 -1987 1327 1237 199 393 51 8 chr4 172769639 172769756 -29558591 - L2 LINE L2 -12 3301 3180 22 35 0 0 chr4 172771516 172771545 -29556802 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 172771561 172771590 -29556757 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 172772577 172772605 -29555742 + AT_rich Low_complexity Low_complexity 1 28 0 2026 104 7 0 chr4 172773153 172773423 -29554924 + AluSq SINE Alu 1 272 -41 449 286 157 30 chr4 172773477 172773903 -29554444 - L1ME4a LINE L1 -142 5979 5500 2298 135 35 30 chr4 172776855 172777405 -29550942 + MLT2A2 LTR ERVL 1 554 0 235 373 9 0 chr4 172777721 172777831 -29550516 + L2 LINE L2 2719 2829 -485 487 271 116 63 chr4 172779919 172780126 -29548221 - LTR16A LTR ERVL -12 438 221 306 284 19 9 chr4 172780274 172780380 -29547967 - LTR16A LTR ERVL -339 111 6 401 350 24 27 chr4 172780542 172780836 -29547511 - ERVL LTR ERVL -438 5326 5034 557 383 39 20 chr4 172780978 172781540 -29546807 - ERVL LTR ERVL -889 4765 4189 1416 145 17 4 chr4 172781603 172781837 -29546510 + Tigger7 DNA MER2_type 2254 2490 -1 988 191 16 0 chr4 172783353 172783536 -29544811 + MER20 DNA MER1_type 33 218 -1 1778 83 0 0 chr4 172783553 172783781 -29544566 - AluSq SINE Alu -3 310 83 180 0 0 0 chr4 172783792 172783812 -29544535 + (T)n Simple_repeat Simple_repeat 1 20 0 2260 116 0 0 chr4 172784915 172785217 -29543130 - AluSx SINE Alu -8 304 3 201 388 19 0 chr4 172785734 172785837 -29542510 + MIR SINE MIR 38 142 -66 21516 112 16 10 chr4 172787421 172791585 -29536762 - L1PA8 LINE L1 -2 6170 1988 28 0 0 0 chr4 172793967 172793995 -29534352 + AT_rich Low_complexity Low_complexity 1 28 0 631 185 8 0 chr4 172793999 172794129 -29534218 - L1MA5 LINE L1 -7 6293 6163 2382 60 3 7 chr4 172794140 172794441 -29533906 - AluY SINE Alu -10 301 2 1525 178 34 14 chr4 172794874 172795167 -29533180 + AluJo SINE Alu 1 299 -13 25 51 0 0 chr4 172795307 172795346 -29533001 + AT_rich Low_complexity Low_complexity 1 39 0 540 288 78 64 chr4 172796506 172796809 -29531538 + HAL1b LINE L1 219 516 -832 1508 175 34 4 chr4 172796809 172797077 -29531270 + AluJb SINE Alu 2 277 -35 1095 59 5 43 chr4 172797077 172797264 -29531083 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 540 288 78 64 chr4 172797264 172797536 -29530811 + HAL1b LINE L1 515 803 -545 891 309 65 46 chr4 172797822 172798256 -29530091 + MLT2F LTR ERVL 214 655 -8 871 212 284 17 chr4 172798275 172798567 -29529780 + MLT1A2 LTR MaLR 5 374 0 6565 177 18 13 chr4 172798905 172800791 -29527556 + L1P5 LINE L1 3897 5781 -370 189 0 0 0 chr4 172800791 172800812 -29527535 + (TA)n Simple_repeat Simple_repeat 2 22 0 606 321 52 12 chr4 172800938 172801408 -29526939 + ERVL LTR ERVL 387 940 -4824 3598 221 37 33 chr4 172801409 172802250 -29526097 + MER21B LTR ERV1 1 844 -19 1261 177 4 13 chr4 172802391 172802617 -29525730 + LTR39 LTR ERV1 1 224 -559 1320 211 4 19 chr4 172802617 172802887 -29525460 + AluJo SINE Alu 44 309 -3 2402 180 62 19 chr4 172802887 172803353 -29524994 + LTR39 LTR ERV1 216 701 -82 1774 96 16 0 chr4 172803356 172803607 -29524740 - L1PA13 LINE L1 0 6163 5909 1665 153 0 46 chr4 172803607 172803934 -29524413 + L1P LINE L1 4918 5229 -917 362 282 12 0 chr4 172803934 172804019 -29524328 + LTR39 LTR ERV1 698 783 0 292 283 65 51 chr4 172804028 172804166 -29524181 + ERVL LTR ERVL 1064 1203 -4561 2549 189 23 19 chr4 172804180 172804705 -29523642 + MER67A LTR ERV1 1 527 -16 1235 246 69 9 chr4 172804792 172805126 -29523221 + Charlie1a DNA MER1_type 1 354 -1101 1781 200 123 58 chr4 172805163 172805389 -29522958 + Charlie1a DNA MER1_type 723 933 -1828 1915 154 20 0 chr4 172805389 172805695 -29522652 + AluJb SINE Alu 1 312 0 1781 200 123 58 chr4 172805695 172806152 -29522195 + Charlie1a DNA MER1_type 933 1450 -5 1430 321 43 10 chr4 172806157 172806737 -29521610 + ERVL LTR ERVL 1264 1862 -3902 356 319 0 21 chr4 172806870 172807014 -29521333 + CT-rich Low_complexity Low_complexity 2 142 0 295 231 58 48 chr4 172807443 172807547 -29520800 + MER34C LTR ERV1 474 578 -7 336 300 92 21 chr4 172807573 172807813 -29520534 + L1MC/D LINE L1 5258 5514 -830 2402 98 0 0 chr4 172807853 172808159 -29520188 + AluSq SINE Alu 1 306 -7 1995 200 81 81 chr4 172808185 172808493 -29519854 + LTR8A LTR ERV1 34 344 -383 2153 126 0 7 chr4 172808493 172808795 -29519552 + AluSx SINE Alu 1 300 -12 1995 200 81 81 chr4 172808795 172809082 -29519265 + LTR8A LTR ERV1 343 629 -98 1206 132 9 60 chr4 172809182 172809470 -29518877 - HERVH LTR ERV1 -2850 4135 3956 * 3690 124 13 13 chr4 172809460 172810057 -29518290 - HERVH LTR ERV1 -3977 3736 3140 * 3746 122 1 39 chr4 172810036 172810685 -29517662 - HERVH LTR ERV1 -4718 2995 2371 411 117 0 0 chr4 172810668 172810728 -29517619 - HERVH LTR ERV1 -7653 60 1 * 677 59 0 12 chr4 172810728 172810813 -29517534 - LTR7 LTR ERV1 0 450 367 2390 115 57 25 chr4 172810824 172811260 -29517087 - LTR7 LTR ERV1 0 450 1 666 239 55 71 chr4 172812080 172812335 -29516012 + MIR SINE MIR 2 252 -10 607 245 55 20 chr4 172813244 172813444 -29514903 - MER3 DNA MER1_type -1 208 2 28 0 0 0 chr4 172813609 172813637 -29514710 + AT_rich Low_complexity Low_complexity 1 28 0 2238 111 0 0 chr4 172813926 172814223 -29514124 - AluSx SINE Alu -14 298 2 696 172 73 82 chr4 172814665 172814898 -29513449 - MER106A DNA MER1_type -1 235 5 252 254 0 0 chr4 172815710 172815765 -29512582 - L2 LINE L2 0 3272 3218 1980 140 30 0 chr4 172817162 172817491 -29510856 + MER44D DNA MER2_type 1 609 0 23 0 0 0 chr4 172817794 172817817 -29510530 + AT_rich Low_complexity Low_complexity 1 23 0 1153 274 174 44 chr4 172818390 172819281 -29509066 - L2 LINE L2 -871 2443 1437 540 325 167 5 chr4 172819299 172819677 -29508670 - LTR16A LTR ERVL -5 445 7 771 262 65 43 chr4 172819687 172819966 -29508381 - L2 LINE L2 -1894 1420 1136 348 311 67 15 chr4 172819949 172820084 -29508263 - L2 LINE L2 -435 2879 2738 * 274 261 61 50 chr4 172820086 172820266 -29508081 - L1ME3A LINE L1 -1 6169 5988 274 261 36 0 chr4 172820346 172820457 -29507890 - L1ME3A LINE L1 -216 5954 5840 688 307 89 4 chr4 172820907 172821177 -29507170 - MLT2E LTR ERVL 0 628 336 277 315 102 15 chr4 172821206 172821403 -29506944 - MLT2E LTR ERVL -384 244 31 1072 298 48 15 chr4 172821440 172821960 -29506387 - L1M4 LINE L1 -2271 3875 3339 2471 40 40 0 chr4 172822135 172822431 -29505916 - AluY SINE Alu -3 308 1 22 56 0 0 chr4 172822526 172822562 -29505785 + AT_rich Low_complexity Low_complexity 1 36 0 207 69 0 0 chr4 172823317 172823346 -29505001 + (TG)n Simple_repeat Simple_repeat 1 29 0 377 345 46 23 chr4 172823547 172823721 -29504626 + MIR SINE MIR 11 188 -74 193 378 16 54 chr4 172823866 172824061 -29504286 + L2 LINE L2 2753 2937 -335 216 319 72 0 chr4 172824266 172824335 -29504012 + L2 LINE L2 3199 3272 0 348 24 0 0 chr4 172824615 172824656 -29503691 + (CA)n Simple_repeat Simple_repeat 2 42 0 2258 113 0 0 chr4 172825405 172825714 -29502633 + AluSx SINE Alu 1 309 -3 2293 101 3 0 chr4 172827828 172828125 -29500222 - AluSx SINE Alu -14 298 1 969 188 97 18 chr4 172829536 172829868 -29498479 + MSTD LTR MaLR 1 388 -8 1955 169 112 3 chr4 172829926 172830310 -29498037 - MSTB LTR MaLR 0 426 1 1638 148 8 12 chr4 172830373 172830617 -29497730 - AluJb SINE Alu -69 243 1 653 217 16 58 chr4 172830936 172831009 -29497338 - MLT1A1 LTR MaLR 0 365 290 683 226 0 0 chr4 172831009 172831133 -29497214 + FLAM_A SINE Alu 1 124 -9 653 217 16 58 chr4 172831133 172831248 -29497099 - MLT1A1 LTR MaLR -75 290 185 702 215 37 0 chr4 172831604 172831767 -29496580 + MER3 DNA MER1_type 1 122 -87 877 150 0 0 chr4 172833272 172833399 -29494948 + FLAM_C SINE Alu 3 129 -4 209 117 0 117 chr4 172833408 172833468 -29494879 + (TAAAA)n Simple_repeat Simple_repeat 3 55 0 2341 109 3 0 chr4 172837450 172837761 -29490586 - AluSp SINE Alu -1 312 1 672 272 113 27 chr4 172837857 172838228 -29490119 - Charlie7 DNA MER1_type -2148 464 62 1750 197 32 53 chr4 172838282 172838866 -29489481 - L1MCa LINE L1 -5041 1523 952 424 254 8 8 chr4 172838959 172839085 -29489262 - L1MCa LINE L1 -5140 905 780 4031 142 45 29 chr4 172839122 172839744 -29488603 - LTR19C LTR ERV1 -7 772 134 1795 74 12 29 chr4 172839744 172839986 -29488361 + AluY SINE Alu 64 301 -10 4031 142 45 29 chr4 172839986 172840123 -29488224 - LTR19C LTR ERV1 -645 134 1 1007 219 20 8 chr4 172840125 172840383 -29487964 - HUERS-P3 LTR ERV1 0 8919 7162 724 158 15 46 chr4 172840701 172840897 -29487450 - HUERS-P3 LTR ERV1 -560 4320 2383 326 167 154 13 chr4 172840912 172840990 -29487357 - HUERS-P3 LTR ERV1 -1957 6962 6874 * 409 250 23 23 chr4 172840983 172841093 -29487254 - HUERS-P3 LTR ERV1 -1984 6935 6826 1422 122 76 22 chr4 172841093 172841424 -29486923 - pTR5 LTR ERV1 0 2438 281 268 247 0 0 chr4 172841424 172841501 -29486846 - LTR30 LTR ERV1 -102 620 544 2863 149 58 32 chr4 172841505 172842288 -29486059 - pTR5 LTR ERV1 -417 2021 743 10481 153 28 23 chr4 172842288 172844193 -29484154 - HUERS-P3 LTR ERV1 -2103 6816 4901 949 139 0 0 chr4 172844194 172844338 -29484009 - HUERS-P3 LTR ERV1 -4237 4682 4539 * 7390 183 12 10 chr4 172844331 172846429 -29481918 - HUERS-P3 LTR ERV1 -5314 2104 891 360 316 6 29 chr4 172846497 172846671 -29481676 - HUERS-P3 LTR ERV1 -6384 612 443 2752 212 23 8 chr4 172846780 172847379 -29480968 - HUERS-P3 LTR ERV1 -7469 1450 843 2144 231 21 34 chr4 172847381 172848008 -29480339 - HUERS-P3 LTR ERV1 -8298 621 3 4371 149 33 18 chr4 172848011 172848776 -29479571 - LTR19C LTR ERV1 0 779 4 978 292 33 10 chr4 172848779 172849173 -29479174 - L1MCb LINE L1 -5293 752 350 264 258 25 31 chr4 172849327 172849490 -29478857 - L1MDa LINE L1 -5083 1457 1296 311 357 9 0 chr4 172850785 172850897 -29477450 - L3 LINE CR1 -454 1123 1011 21 36 0 0 chr4 172851488 172851516 -29476831 + AT_rich Low_complexity Low_complexity 1 28 0 1953 164 0 13 chr4 172852003 172852314 -29476033 + AluJo SINE Alu 1 307 -5 856 245 95 34 chr4 172852662 172852956 -29475391 - L2 LINE L2 0 3313 3002 23 54 0 0 chr4 172853281 172853318 -29475029 + AT_rich Low_complexity Low_complexity 1 37 0 419 308 77 0 chr4 172855937 172856054 -29472293 - L2 LINE L2 -1 3312 3187 1570 274 159 23 chr4 172856061 172856786 -29471561 + L2 LINE L2 1948 2770 -544 291 336 34 34 chr4 172857018 172857164 -29471183 + MIR SINE MIR 107 252 -10 192 40 0 0 chr4 172857164 172857189 -29471158 + (A)n Simple_repeat Simple_repeat 1 25 0 365 262 39 0 chr4 172857189 172857292 -29471055 + L2 LINE L2 2735 2841 -473 611 290 62 18 chr4 172857319 172857591 -29470756 + MLT1G LTR MaLR 1 284 -311 820 200 65 9 chr4 172857624 172857841 -29470506 + MLT1G LTR MaLR 361 586 -4 30 45 0 0 chr4 172857900 172857944 -29470403 + AT_rich Low_complexity Low_complexity 1 44 0 594 225 51 71 chr4 172858433 172858686 -29469661 + L2 LINE L2 3023 3270 -43 2474 21 7 0 chr4 172858702 172858991 -29469356 + L1PA4 LINE L1 5865 6155 0 637 284 92 19 chr4 172858993 172859404 -29468943 - L2 LINE L2 -161 3152 2717 21 0 0 0 chr4 172859786 172859807 -29468540 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4 172859841 172859865 -29468482 + AT_rich Low_complexity Low_complexity 1 24 0 6440 37 23 2 chr4 172859916 172865877 -29462470 - L1PA3 LINE L1 0 6155 1 1923 132 0 20 chr4 172865880 172866175 -29462172 - AluSg SINE Alu -21 289 1 302 185 74 19 chr4 172866256 172866364 -29461983 - L1M4 LINE L1 -1300 4846 4733 261 214 48 0 chr4 172866391 172866475 -29461872 - L1MC4 LINE L1 -1341 6701 6614 478 196 23 6 chr4 172866481 172866654 -29461693 + (TA)n Simple_repeat Simple_repeat 2 177 0 231 222 0 0 chr4 172866666 172866720 -29461627 + (TA)n Simple_repeat Simple_repeat 2 55 0 1680 200 7 0 chr4 172866768 172867068 -29461279 - AluJb SINE Alu -10 302 1 427 209 113 14 chr4 172867075 172867319 -29461028 - L1MEc LINE L1 -3797 2418 2172 746 97 8 22 chr4 172869116 172869250 -29459097 + (GGAA)n Simple_repeat Simple_repeat 1 132 0 1420 294 150 60 chr4 172870065 172871535 -29456812 + L2 LINE L2 714 2314 -1000 353 244 92 109 chr4 172871540 172871998 -29456349 - MLT1J2 LTR MaLR 0 450 1 494 258 64 24 chr4 172873111 172873406 -29454941 - Charlie4 DNA MER1_type 0 1961 1655 674 201 139 82 chr4 172873441 172873844 -29454503 + LTR37A LTR ERV1 1 426 0 371 242 67 33 chr4 172873981 172874101 -29454246 - MLT1J LTR MaLR -302 209 86 22 56 0 0 chr4 172874643 172874679 -29453668 + AT_rich Low_complexity Low_complexity 1 36 0 2860 148 35 4 chr4 172874884 172875365 -29452982 + LOR1a LTR ERV1 1 496 -1 375 291 64 0 chr4 172875551 172875692 -29452655 + MER103 DNA DNA 14 163 -3 2157 117 3 10 chr4 172875824 172876156 -29452191 + AluSg SINE Alu 1 310 0 518 220 0 0 chr4 172876228 172876337 -29452010 - MER101 LTR ERV1 -2 472 364 5132 175 9 13 chr4 172876337 172877951 -29450396 + L1P5 LINE L1 4124 5730 -421 6200 182 51 16 chr4 172878055 172879514 -29448833 + L1MCa LINE L1 379 1977 -4449 259 241 0 0 chr4 172879795 172879853 -29448494 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 22 0 0 0 chr4 172880258 172880280 -29448067 + AT_rich Low_complexity Low_complexity 1 22 0 243 300 29 0 chr4 172880332 172880402 -29447945 - L2 LINE L2 -1 3312 3241 185 65 32 0 chr4 172880661 172880692 -29447655 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 240 100 50 0 chr4 172881229 172881269 -29447078 - THE1A LTR MaLR -313 42 1 7009 122 15 8 chr4 172881269 172882295 -29446052 - THE1A-int LTR MaLR 0 1580 548 610 283 101 13 chr4 172882829 172883066 -29445281 + MIR SINE MIR 5 262 0 217 216 17 60 chr4 172883757 172883873 -29444474 + A-rich Low_complexity Low_complexity 4 114 0 767 121 15 15 chr4 172884152 172884284 -29444063 - THE1A-int LTR MaLR -1448 132 1 2536 84 29 6 chr4 172884284 172884631 -29443716 - THE1A LTR MaLR 0 355 1 2389 39 3 3 chr4 172885485 172885805 -29442542 + AluY SINE Alu 1 320 0 985 289 72 14 chr4 172885805 172886713 -29441634 - L1ME3 LINE L1 -233 5929 4960 2075 161 13 3 chr4 172887016 172887388 -29440959 + L1MC1 LINE L1 5950 6325 -8 816 165 8 0 chr4 172887388 172887521 -29440826 + AluJo SINE Alu 1 134 -178 3068 211 29 11 chr4 172887584 172888279 -29440068 - L1MB8 LINE L1 -153 6025 5319 185 327 59 40 chr4 172888805 172888906 -29439441 + L2 LINE L2 3169 3271 -1 1748 156 0 83 chr4 172889492 172889831 -29438516 - AluJo SINE Alu -1 311 1 2374 132 8 16 chr4 172890510 172890888 -29437459 + THE1C LTR MaLR 1 375 0 554 329 32 37 chr4 172890894 172891140 -29437207 - MIR SINE MIR -10 252 8 2070 102 4 4 chr4 172891320 172891594 -29436753 + AluSg SINE Alu 6 279 -31 192 111 0 0 chr4 172892506 172892542 -29435805 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2061 129 3 0 chr4 172893285 172893571 -29434776 - AluSx SINE Alu -25 287 1 278 326 135 7 chr4 172893633 172893774 -29434573 + MIR SINE MIR 86 244 -18 1618 158 19 0 chr4 172894008 172894274 -29434073 + L1PA16 LINE L1 5888 6158 -8 233 173 0 19 chr4 172894287 172894339 -29434008 + L1MC/D LINE L1 5195 5245 -901 * 2199 92 0 3 chr4 172894323 172894627 -29433720 - L1PA10 LINE L1 -510 5621 5319 4082 88 4 0 chr4 172894627 172895174 -29433173 + L1PA10 LINE L1 5608 6156 -12 2738 188 26 5 chr4 172895177 172895756 -29432591 + L1MC/D LINE L1 5227 5817 -527 3326 88 35 12 chr4 172895921 172896412 -29431935 - L1PB1 LINE L1 -16 6135 5634 416 249 33 18 chr4 172897422 172897586 -29430761 - LTR23 LTR ERV1 -1 444 296 240 228 50 59 chr4 172897702 172897803 -29430544 - L1 LINE L1 -1302 4844 4745 2440 76 0 0 chr4 172897945 172898249 -29430098 - AluSc SINE Alu -5 304 1 251 339 138 8 chr4 172898347 172898477 -29429870 - MER5B DNA MER1_type -7 171 25 347 298 107 0 chr4 172898527 172898648 -29429699 + MIR SINE MIR 53 186 -76 21 0 0 0 chr4 172899156 172899177 -29429170 + AT_rich Low_complexity Low_complexity 1 21 0 256 269 96 103 chr4 172899321 172899477 -29428870 - L2 LINE L2 -566 2748 2594 719 196 23 0 chr4 172899708 172899841 -29428506 - FLAM_C SINE Alu -7 136 1 1752 144 72 36 chr4 172900151 172900513 -29427834 - THE1C LTR MaLR 0 375 1 2479 74 0 0 chr4 172903468 172903778 -29424569 - AluSx SINE Alu -2 310 1 1152 145 36 27 chr4 172903839 172904060 -29424287 - THE1C LTR MaLR 0 375 153 234 341 95 24 chr4 172904719 172904845 -29423502 + L2 LINE L2 3136 3270 -2 1768 118 102 0 chr4 172905131 172905406 -29422941 + AluSg SINE Alu 1 301 0 285 278 272 0 chr4 172905897 172906077 -29422270 - MIR SINE MIR -1 261 33 1473 176 39 9 chr4 172906255 172906590 -29421757 + L1MCa LINE L1 1813 2157 -4269 2381 165 29 7 chr4 172906590 172907009 -29421338 + MSTA LTR MaLR 1 428 0 4012 148 48 0 chr4 172907009 172907677 -29420670 + MSTA-int LTR MaLR 1 700 -951 28 0 0 0 chr4 172908859 172908887 -29419460 + AT_rich Low_complexity Low_complexity 1 28 0 1749 178 3 10 chr4 172909160 172909474 -29418873 - AluJb SINE Alu 0 312 1 521 323 26 26 chr4 172910150 172910376 -29417971 - MIR SINE MIR -35 227 2 7754 147 20 0 chr4 172911965 172913206 -29415141 + Tigger1 DNA MER2_type 2 1267 -1151 1352 117 16 52 chr4 172913198 172913332 -29415015 + Tigger1 DNA MER2_type 1662 1784 -634 * 2035 119 27 0 chr4 172913332 172913627 -29414720 + AluSx SINE Alu 3 305 -7 1352 117 16 52 chr4 172913627 172913741 -29414606 + Tigger1 DNA MER2_type 1784 1901 -517 815 178 17 28 chr4 172913853 172914033 -29414314 - AluSx SINE Alu -134 178 1 373 259 43 43 chr4 172915116 172915255 -29413092 - MIR3 SINE MIR -11 197 59 418 247 0 0 chr4 172915310 172915399 -29412948 + MIR SINE MIR 70 158 -104 189 345 194 0 chr4 172916105 172916270 -29412077 + L2 LINE L2 2451 2647 -667 2119 46 57 4 chr4 172916706 172916987 -29411360 + AluY SINE Alu 1 296 -15 22 80 0 0 chr4 172918522 172918572 -29409775 + AT_rich Low_complexity Low_complexity 1 50 0 26 30 0 0 chr4 172919247 172919280 -29409067 + AT_rich Low_complexity Low_complexity 1 33 0 613 261 73 113 chr4 172920709 172920899 -29407448 - L2 LINE L2 -5 3308 3112 1790 204 48 37 chr4 172920899 172921361 -29406986 - MLT1C LTR MaLR 0 467 1 613 261 73 113 chr4 172921361 172921834 -29406513 - L2 LINE L2 -201 3112 2664 687 242 9 30 chr4 172921850 172922081 -29406266 - L1MC5 LINE L1 -724 7237 7012 374 140 19 97 chr4 172922085 172922200 -29406147 - L1MC5 LINE L1 -1004 7038 6864 245 313 42 10 chr4 172922193 172922289 -29406058 - L1ME LINE L1 -5961 109 11 * 1029 277 116 30 chr4 172922604 172923045 -29405302 + MLT1G LTR MaLR 52 530 -60 231 143 44 33 chr4 172923107 172923198 -29405149 + (TAA)n Simple_repeat Simple_repeat 3 94 0 222 237 32 86 chr4 172923983 172924076 -29404271 + MIR SINE MIR 102 189 -73 326 289 121 40 chr4 172924577 172924750 -29403597 + MIR3 SINE MIR 17 203 -5 911 255 34 21 chr4 172924755 172924994 -29403353 + MIR SINE MIR 5 246 -16 372 299 130 0 chr4 172925040 172925194 -29403153 - MIR SINE MIR -25 237 64 23 54 0 0 chr4 172926675 172926712 -29401635 + AT_rich Low_complexity Low_complexity 1 37 0 1371 221 18 0 chr4 172926733 172927005 -29401342 + AluJo SINE Alu 5 281 -31 26 50 0 0 chr4 172927109 172927149 -29401198 + AT_rich Low_complexity Low_complexity 1 40 0 27 0 0 0 chr4 172927181 172927208 -29401139 + AT_rich Low_complexity Low_complexity 1 27 0 1988 141 6 32 chr4 172927531 172927826 -29400521 + MER47A DNA MER2_type 1 287 -2036 1802 153 40 3 chr4 172927826 172928127 -29400220 + AluJb SINE Alu 1 312 0 1988 141 6 32 chr4 172928127 172928171 -29400176 + MER47A DNA MER2_type 287 331 -35 220 308 0 106 chr4 172929177 172929281 -29399066 + L2 LINE L2 3188 3280 -33 248 122 0 0 chr4 172929493 172929542 -29398805 - AluJb SINE Alu -1 301 253 825 190 0 0 chr4 172929542 172929679 -29398668 - AluJb SINE Alu -36 276 140 360 293 0 0 chr4 172929717 172929833 -29398514 - AluJb SINE Alu -170 132 17 308 254 95 118 chr4 172931993 172932308 -29396039 - L1M2 LINE L1 -6070 779 472 354 23 0 0 chr4 172933044 172933087 -29395260 + (TG)n Simple_repeat Simple_repeat 1 43 0 205 98 49 0 chr4 172933087 172933128 -29395219 + GA-rich Low_complexity Low_complexity 2 44 0 22 56 0 0 chr4 172933819 172933855 -29394492 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr4 172934233 172934257 -29394090 + AT_rich Low_complexity Low_complexity 1 24 0 3420 123 5 14 chr4 172935087 172935719 -29392628 - L1PBa LINE L1 -4588 2275 1650 4140 181 39 74 chr4 172935738 172937043 -29391304 + L1MD2 LINE L1 5077 6337 -22 2092 100 10 45 chr4 172938499 172938808 -29389539 + AluSq SINE Alu 1 298 -15 1671 107 9 133 chr4 172939000 172939337 -29389010 + AluSx SINE Alu 1 295 -7 2368 101 3 0 chr4 172939990 172940298 -29388049 + AluSc SINE Alu 1 309 0 201 213 21 0 chr4 172940449 172940496 -29387851 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 344 363 51 0 chr4 172941000 172941157 -29387190 + MIR3 SINE MIR 40 204 -4 1106 230 91 62 chr4 172943093 172943607 -29384740 - LTR55 LTR ERV -19 529 1 347 247 151 11 chr4 172944389 172944482 -29383865 - MER5A DNA MER1_type -14 175 70 1321 63 6 6 chr4 172944530 172944705 -29383642 + AluY SINE Alu 128 302 -9 539 307 44 18 chr4 172945286 172945511 -29382836 - MIR SINE MIR -29 233 3 325 316 10 112 chr4 172945822 172946028 -29382319 + MIR3 SINE MIR 23 207 -1 225 0 0 0 chr4 172946994 172947019 -29381328 + (GA)n Simple_repeat Simple_repeat 2 26 0 446 230 43 36 chr4 172947056 172947195 -29381152 + MIR SINE MIR 8 147 -115 1477 175 52 0 chr4 172947697 172948005 -29380342 + L1MA6 LINE L1 5971 6294 -6 1423 171 63 42 chr4 172948105 172948391 -29379956 - AluJo SINE Alu -10 292 1 244 196 49 69 chr4 172949574 172949676 -29378671 - L1M4 LINE L1 -485 5699 5600 1544 252 70 14 chr4 172949728 172950467 -29377880 - L1M4 LINE L1 -2550 3596 2816 784 200 13 7 chr4 172950473 172950628 -29377719 - FRAM SINE Alu -23 153 1 465 19 0 0 chr4 172951826 172951880 -29376467 + (GA)n Simple_repeat Simple_repeat 1 54 0 1811 139 25 0 chr4 172954129 172954445 -29373902 - AluSx SINE Alu 0 323 1 24 32 0 0 chr4 172955086 172955117 -29373230 + AT_rich Low_complexity Low_complexity 1 31 0 226 274 0 16 chr4 172955840 172955902 -29372445 - L2 LINE L2 -4 3309 3249 2446 84 0 0 chr4 172956462 172956770 -29371577 + AluY SINE Alu 1 308 -3 1848 168 10 7 chr4 172957135 172957439 -29370908 - AluJb SINE Alu -5 307 3 400 296 72 0 chr4 172957465 172957590 -29370757 - MIR SINE MIR -78 184 51 1957 110 43 118 chr4 172959100 172959491 -29368856 - THE1B LTR MaLR 0 364 3 21 57 0 0 chr4 172959568 172959603 -29368744 + AT_rich Low_complexity Low_complexity 1 35 0 210 308 0 0 chr4 172959917 172959969 -29368378 - L2 LINE L2 -87 3185 3134 472 278 196 0 chr4 172961268 172961462 -29366885 + MIR SINE MIR 18 249 -13 193 209 60 15 chr4 172961588 172961655 -29366692 - L2 LINE L2 -1328 1986 1917 3440 176 20 28 chr4 172962032 172962679 -29365668 - MER52A LTR ERV1 0 1755 1114 207 0 0 0 chr4 172962978 172963001 -29365346 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 369 265 71 0 chr4 172963923 172964021 -29364326 + L2 LINE L2 3168 3272 0 195 209 23 0 chr4 172964103 172964146 -29364201 - L2 LINE L2 0 3313 3270 415 241 48 21 chr4 172964146 172964291 -29364056 + LTR1B LTR ERV1 24 172 -654 601 260 101 55 chr4 172964606 172965021 -29363326 - LTR1B LTR ERV1 -333 493 60 29 0 0 0 chr4 172965139 172965168 -29363179 + AT_rich Low_complexity Low_complexity 1 29 0 2539 58 0 3 chr4 172966709 172967043 -29361304 + AluY SINE Alu 1 333 0 655 97 0 29 chr4 172967121 172967224 -29361123 + AluJ/FLAM SINE Alu 1 100 -212 2160 121 3 0 chr4 172967327 172967617 -29360730 - AluSq SINE Alu -22 291 1 279 264 85 0 chr4 172968416 172968545 -29359802 + MER104 DNA Tc2 37 176 -4 2274 108 3 3 chr4 172969409 172969716 -29358631 - AluSg SINE Alu -3 307 1 189 107 0 0 chr4 172970278 172970306 -29358041 + (TG)n Simple_repeat Simple_repeat 2 29 0 210 257 40 0 chr4 172970900 172970974 -29357373 + G-rich Low_complexity Low_complexity 5 81 0 784 314 129 32 chr4 172973653 172974155 -29354192 + L2 LINE L2 2564 3139 -174 2134 117 17 0 chr4 172974155 172974455 -29353892 - AluSx SINE Alu -7 305 1 784 314 129 32 chr4 172974455 172974649 -29353698 + L2 LINE L2 3139 3313 0 305 368 60 22 chr4 172976414 172976599 -29351748 - L3 LINE CR1 -297 1280 1089 480 275 71 50 chr4 172978804 172978986 -29349361 - MIR SINE MIR -70 192 7 185 256 13 90 chr4 172979239 172979317 -29349030 + MIR SINE MIR 191 262 0 2219 83 3 3 chr4 172979899 172980188 -29348159 - AluSg SINE Alu -21 289 1 233 232 128 8 chr4 172981589 172981714 -29346633 - L2 LINE L2 -1927 1387 1248 249 318 94 50 chr4 172981920 172982197 -29346150 - L2 LINE L2 -895 2419 2131 225 191 0 0 chr4 172982824 172982871 -29345476 + CT-rich Low_complexity Low_complexity 2 48 0 239 281 37 37 chr4 172983110 172983192 -29345155 + MIR3 SINE MIR 118 199 -9 235 250 242 61 chr4 172984465 172984597 -29343750 - L2 LINE L2 0 3313 3158 2116 116 3 16 chr4 172985688 172985999 -29342348 - AluSq SINE Alu -4 309 3 198 0 0 0 chr4 172986151 172986173 -29342174 + (T)n Simple_repeat Simple_repeat 1 22 0 261 0 0 0 chr4 172986815 172986844 -29341503 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 407 99 14 14 chr4 172990583 172990654 -29337693 + MER3 DNA MER1_type 95 165 -44 40 0 0 0 chr4 172990960 172991000 -29337347 + AT_rich Low_complexity Low_complexity 1 40 0 248 272 74 74 chr4 172991728 172991809 -29336538 - L2 LINE L2 -5 3308 3228 2357 91 10 0 chr4 172992355 172992653 -29335694 - AluSx SINE Alu -11 301 1 6412 123 189 89 chr4 172993029 172994620 -29333727 - pTR5 LTR ERV1 0 2438 689 23 0 0 0 chr4 172994995 172995018 -29333329 + AT_rich Low_complexity Low_complexity 1 23 0 573 338 72 58 chr4 172995478 172996120 -29332227 + L1MC/D LINE L1 4629 5267 -879 24 0 0 0 chr4 172996127 172996151 -29332196 + AT_rich Low_complexity Low_complexity 1 24 0 285 277 71 13 chr4 172996163 172996318 -29332029 + L1MC/D LINE L1 5317 5480 -2328 301 241 7 106 chr4 172996846 172996987 -29331360 + HAL1b LINE L1 1193 1319 -29 21 71 0 0 chr4 172999088 172999130 -29329217 + AT_rich Low_complexity Low_complexity 1 42 0 1405 222 94 42 chr4 172999178 172999655 -29328692 - MLT1D LTR MaLR -2 503 2 203 263 139 80 chr4 172999863 173000000 -29328347 - MIR3 SINE MIR -5 203 59 714 142 50 0 chr4 173000478 173000598 -29327749 - FLAM_C SINE Alu -17 126 1 187 352 56 40 chr4 173001695 173001820 -29326527 - L2 LINE L2 -6 3266 3140 219 302 0 47 chr4 173002207 173002293 -29326054 + L2 LINE L2 3187 3268 -4 402 206 15 0 chr4 173003442 173003510 -29324837 - MIR SINE MIR -165 97 29 607 171 0 62 chr4 173004365 173004511 -29323836 - L1MB7 LINE L1 -17 6167 6031 1730 215 68 17 chr4 173004519 173004933 -29323414 + L1MCa LINE L1 23 457 -5969 5454 182 11 7 chr4 173005033 173005994 -29322353 + MSTA-int LTR MaLR 687 1651 0 2099 156 62 15 chr4 173005998 173006403 -29321944 + MSTA LTR MaLR 5 428 0 1444 219 23 53 chr4 173006403 173007199 -29321148 + L1MCa LINE L1 2153 2925 -3501 625 257 0 0 chr4 173007650 173007798 -29320549 + MER46C DNA MER2_type 100 247 -91 1539 211 60 3 chr4 173010658 173011028 -29317319 - L1MB7 LINE L1 -9 6175 5785 552 255 29 44 chr4 173011216 173011391 -29316956 + MER4E LTR ERV1 25 409 -374 * 4008 164 5 6 chr4 173011381 173012033 -29316314 + MER50 LTR ERV1 7 657 -77 192 225 0 138 chr4 173012255 173012287 -29316060 - L2 LINE L2 -16 3297 3281 2358 91 0 7 chr4 173012287 173012596 -29315751 - AluY SINE Alu -4 307 1 192 225 0 138 chr4 173012596 173012643 -29315704 - L2 LINE L2 -32 3281 3229 1924 134 126 45 chr4 173012710 173013106 -29315241 + MSTA LTR MaLR 1 428 0 247 150 33 0 chr4 173013245 173013305 -29315042 + GA-rich Low_complexity Low_complexity 3 64 0 869 180 0 0 chr4 173013361 173013546 -29314801 - AluJb SINE Alu 0 331 147 856 137 72 7 chr4 173013665 173013804 -29314543 - AluJb SINE Alu -164 148 1 219 400 8 46 chr4 173013829 173013959 -29314388 - L2 LINE L2 -341 2973 2849 1909 149 27 0 chr4 173014293 173014594 -29313753 + AluSx SINE Alu 1 309 -3 245 226 38 0 chr4 173014596 173014649 -29313698 + GA-rich Low_complexity Low_complexity 2 56 0 2575 180 98 31 chr4 173014834 173014887 -29313460 - L1P5 LINE L1 -683 5471 5423 1880 142 0 48 chr4 173014887 173015198 -29313149 - AluSx SINE Alu -14 298 3 2575 180 98 31 chr4 173015198 173015921 -29312426 - L1P5 LINE L1 -731 5423 4659 274 221 13 13 chr4 173017091 173017168 -29311179 + MER116 DNA Mariner 3 79 -1 352 305 67 0 chr4 173017383 173017488 -29310859 + L2 LINE L2 3187 3298 -15 21 0 0 0 chr4 173017536 173017557 -29310790 + AT_rich Low_complexity Low_complexity 1 21 0 1143 273 109 21 chr4 173068688 173069120 -29259227 + L2 LINE L2 2221 2690 -624 220 296 19 0 chr4 173069148 173069202 -29259145 - MIR SINE MIR -113 95 41 25 0 0 0 chr4 173069730 173069755 -29258592 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr4 173070731 173070764 -29257583 + AT_rich Low_complexity Low_complexity 1 33 0 491 18 0 0 chr4 173071315 173071372 -29256975 - L1P LINE L1 -1522 4624 4568 432 227 59 17 chr4 173071803 173071922 -29256425 - REP3 LTR ERV -266 296 173 426 311 34 71 chr4 173072056 173072294 -29256053 - L2 LINE L2 -655 2659 2431 521 337 233 25 chr4 173072410 173073326 -29255021 - L2 LINE L2 -1892 1422 317 530 197 30 116 chr4 173073405 173073498 -29254849 + MER58C DNA MER1_type 2 101 -2319 2111 115 14 0 chr4 173073498 173073786 -29254561 - AluSx SINE Alu -20 292 1 530 197 30 116 chr4 173073786 173073925 -29254422 + MER58C DNA MER1_type 101 214 -1 441 131 0 3 chr4 173074419 173074494 -29253853 - L1M3 LINE L1 -419 5749 5676 362 360 40 21 chr4 173075506 173075655 -29252692 + MIR SINE MIR 14 167 -41 2357 89 3 0 chr4 173075918 173076221 -29252126 + AluSp SINE Alu 4 307 -6 1990 138 10 0 chr4 173076811 173077102 -29251245 - AluSx SINE Alu -18 294 1 732 146 64 0 chr4 173077263 173077373 -29250974 + AluJb SINE Alu 2 118 -194 47 44 0 0 chr4 173077373 173077441 -29250906 + AT_rich Low_complexity Low_complexity 1 68 0 1981 108 38 17 chr4 173078506 173078794 -29249553 + AluSc SINE Alu 1 294 -15 25 0 0 0 chr4 173079279 173079304 -29249043 + AT_rich Low_complexity Low_complexity 1 25 0 1739 265 126 49 chr4 173079372 173079999 -29248348 - Charlie2b DNA MER1_type -1332 1450 873 2403 103 0 0 chr4 173079999 173080309 -29248038 - AluSg SINE Alu 0 310 1 1739 265 126 49 chr4 173080309 173081019 -29247328 - Charlie2b DNA MER1_type -1909 873 6 1375 282 52 24 chr4 173081160 173081856 -29246491 + L1ME3A LINE L1 4616 5330 -816 2135 98 29 0 chr4 173081891 173082192 -29246155 - AluSx SINE Alu 0 309 1 1730 266 26 18 chr4 173082258 173082868 -29245479 + L1ME3A LINE L1 5551 6165 -5 2417 83 0 3 chr4 173083354 173083666 -29244681 + AluY SINE Alu 1 311 0 275 259 46 28 chr4 173083744 173083852 -29244495 + MIR SINE MIR 92 201 -61 400 229 37 55 chr4 173083855 173083964 -29244383 + MIR SINE MIR 53 159 -103 2222 123 0 0 chr4 173084020 173084322 -29244025 + AluSx SINE Alu 1 302 -10 22 0 0 0 chr4 173084457 173084479 -29243868 + AT_rich Low_complexity Low_complexity 1 22 0 2224 168 53 19 chr4 173085090 173085502 -29242845 + MSTB LTR MaLR 1 426 0 209 271 0 21 chr4 173085722 173085770 -29242577 + MER5B DNA MER1_type 132 178 0 5588 80 70 22 chr4 173086153 173086941 -29241406 - LTR12 LTR ERV1 0 826 1 4332 97 2 0 chr4 173086941 173087551 -29240796 - HERV9 LTR ERV1 0 8399 7789 394 113 0 0 chr4 173087547 173087609 -29240738 - HERV9 LTR ERV1 -835 7564 7503 * 550 144 23 60 chr4 173087607 173087822 -29240525 - HERV17 LTR ERV1 -7726 900 694 3197 98 13 0 chr4 173087834 173088294 -29240053 - HERV17 LTR ERV1 -3451 4948 4483 23 0 0 0 chr4 173088538 173088561 -29239786 + AT_rich Low_complexity Low_complexity 1 23 0 744 259 68 8 chr4 173090540 173090791 -29237556 - L1P LINE L1 -851 5295 5030 1590 153 31 7 chr4 173090794 173091088 -29237259 + L1PA16 LINE L1 5866 6166 0 1578 67 5 0 chr4 173091865 173092058 -29236289 + AluYb8 SINE Alu 1 194 -124 529 260 58 26 chr4 173092208 173092362 -29235985 - L2 LINE L2 -1684 1630 1472 261 140 40 20 chr4 173092365 173092415 -29235932 - MER45A DNA AcHobo -3 175 125 405 39 0 0 chr4 173092517 173092568 -29235779 + (TG)n Simple_repeat Simple_repeat 1 51 0 1344 212 40 18 chr4 173092568 173092894 -29235453 - MLT2D LTR ERVL -81 333 1 1220 267 77 65 chr4 173092894 173093437 -29234910 - MER45C DNA AcHobo -394 559 10 949 274 128 31 chr4 173093508 173093921 -29234426 - L2 LINE L2 -1835 1479 1027 367 261 177 81 chr4 173094047 173094330 -29234017 - L2 LINE L2 0 3313 3004 310 131 12 155 chr4 173094429 173094513 -29233834 - MER91C DNA MER1_type -49 91 20 27 49 0 0 chr4 173094822 173094863 -29233484 + AT_rich Low_complexity Low_complexity 1 41 0 304 165 24 16 chr4 173094916 173095043 -29233304 + (TA)n Simple_repeat Simple_repeat 2 129 0 42 98 0 0 chr4 173095047 173095180 -29233167 + AT_rich Low_complexity Low_complexity 1 133 0 971 217 8 25 chr4 173095180 173095420 -29232927 + MER46A DNA MER2_type 1 236 0 325 225 56 0 chr4 173096752 173096841 -29231506 - FLAM_C SINE Alu -9 124 31 958 98 0 0 chr4 173096957 173097080 -29231267 - AluSq/x SINE Alu -190 123 1 1844 145 28 3 chr4 173097224 173097513 -29230834 + AluSx SINE Alu 1 296 -16 339 302 76 35 chr4 173098493 173098665 -29229682 - L1ME1 LINE L1 -54 6112 5934 * 1325 274 98 25 chr4 173098642 173098887 -29229460 - L1MEc LINE L1 -5047 1185 959 318 26 0 0 chr4 173098887 173098926 -29229421 + (TA)n Simple_repeat Simple_repeat 2 40 0 2033 142 0 7 chr4 173098929 173099225 -29229122 - AluSq SINE Alu -19 294 1 1325 274 98 25 chr4 173099225 173100038 -29228309 - L1MEc LINE L1 -5274 958 49 234 0 0 0 chr4 173100651 173100677 -29227670 + (A)n Simple_repeat Simple_repeat 1 26 0 378 311 110 40 chr4 173100680 173101108 -29227239 - MLT1J LTR MaLR -52 459 2 2121 4 0 28 chr4 173102842 173103091 -29225256 + L1PA3 LINE L1 5909 6150 -5 1318 200 64 0 chr4 173103094 173103389 -29224958 - MER58B DNA MER1_type -23 318 5 23 0 0 0 chr4 173103856 173103879 -29224468 + AT_rich Low_complexity Low_complexity 1 23 0 1802 144 97 3 chr4 173108583 173108922 -29219425 + MER93b LTR ERV1 1 371 -2 2385 65 0 3 chr4 173108983 173109277 -29219070 + AluY SINE Alu 1 293 -18 402 335 61 6 chr4 173109413 173109577 -29218770 + MER5B DNA MER1_type 1 173 -5 791 225 6 11 chr4 173109600 173109778 -29218569 + MER5B DNA MER1_type 1 177 -1 733 364 66 27 chr4 173110533 173111336 -29217011 + L2 LINE L2 2226 3062 -210 316 236 180 11 chr4 173112025 173112114 -29216233 - MIR SINE MIR -87 175 72 200 217 0 50 chr4 173112559 173112619 -29215728 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 311 365 105 35 chr4 173113391 173113676 -29214671 - L2 LINE L2 0 3272 2968 1438 203 0 47 chr4 173113837 173114160 -29214187 - AluJo SINE Alu 0 309 1 1247 201 77 29 chr4 173114185 173114599 -29213748 + L1ME LINE L1 5204 5629 -537 1424 211 53 78 chr4 173114668 173114796 -29213551 + L1ME1 LINE L1 5582 5712 -622 579 251 126 0 chr4 173114796 173114995 -29213352 - MER58A DNA MER1_type 0 224 1 1424 211 53 78 chr4 173114995 173115474 -29212873 + L1ME1 LINE L1 5712 6333 -1 738 234 113 9 chr4 173116062 173116293 -29212054 + MLT1F1 LTR MaLR 313 567 0 350 257 87 59 chr4 173116969 173117222 -29211125 - MER113 DNA MER1_type? -24 497 238 600 261 43 37 chr4 173117285 173117473 -29210874 + MER5A DNA MER1_type 1 189 0 233 281 0 0 chr4 173117527 173117584 -29210763 - MER113 DNA MER1_type? -464 57 1 965 283 83 33 chr4 173117912 173118416 -29209931 + L2 LINE L2 2066 3241 -72 756 271 152 15 chr4 173119413 173119742 -29208605 - MLT1J LTR MaLR -130 381 8 243 331 116 41 chr4 173119855 173120160 -29208187 + L2 LINE L2 2656 2981 -291 1593 237 85 62 chr4 173120511 173120890 -29207457 + MLT1E LTR MaLR 3 401 -192 1743 195 0 3 chr4 173120890 173121197 -29207150 + AluSx SINE Alu 1 306 -6 1593 237 85 62 chr4 173121197 173121395 -29206952 + MLT1E LTR MaLR 401 593 0 2055 144 18 0 chr4 173122454 173122794 -29205553 - MER7A DNA MER2_type 0 346 3 418 335 141 31 chr4 173123632 173123859 -29204488 - L2 LINE L2 -21 3251 3000 2246 135 0 0 chr4 173125178 173125489 -29202858 + AluSx SINE Alu 1 311 -1 747 223 150 7 chr4 173125841 173126141 -29202206 - MER2 DNA MER2_type 0 344 2 318 384 55 0 chr4 173126542 173126706 -29201641 + L1MC4a LINE L1 5420 5592 -2216 1109 239 49 28 chr4 173126707 173126991 -29201356 + AluJo SINE Alu 1 290 -12 205 151 19 57 chr4 173127001 173127054 -29201293 + A-rich Low_complexity Low_complexity 3 53 0 2592 47 0 0 chr4 173127079 173127379 -29200968 + AluY SINE Alu 1 300 -11 441 251 137 32 chr4 173127380 173127695 -29200652 + L1MC4a LINE L1 5612 5959 -1849 1604 197 111 54 chr4 173127804 173128282 -29200065 + MLT1D LTR MaLR 1 505 0 870 121 8 0 chr4 173128714 173128828 -29199519 + AluSq/x SINE Alu 1 118 -194 1844 106 0 0 chr4 173128828 173129074 -29199273 + AluSq SINE Alu 61 306 -7 499 164 262 0 chr4 173129300 173129422 -29198925 - MIR SINE MIR -21 241 88 29 70 0 0 chr4 173129989 173130046 -29198301 + AT_rich Low_complexity Low_complexity 1 57 0 318 50 0 0 chr4 173131454 173131494 -29196853 + (CCCTG)n Simple_repeat Simple_repeat 3 42 0 200 222 0 16 chr4 173131503 173131566 -29196781 + CT-rich Low_complexity Low_complexity 3 64 0 1636 52 0 82 chr4 173131566 173131798 -29196549 - AluSq SINE Alu -100 213 1 481 239 301 16 chr4 173131934 173132240 -29196107 - L2 LINE L2 -6 3307 2915 1231 172 136 32 chr4 173132243 173132669 -29195678 - MER51A LTR ERV1 0 634 1 1799 133 75 33 chr4 173132844 173133176 -29195171 - MER7A DNA MER2_type 0 346 3 194 91 30 0 chr4 173133821 173133854 -29194493 + (TG)n Simple_repeat Simple_repeat 1 34 0 346 237 97 88 chr4 173133890 173134118 -29194229 + L1MEc LINE L1 2032 2261 -4135 1303 300 72 30 chr4 173134123 173135140 -29193207 + L1MEc LINE L1 2237 3296 -2919 1993 137 7 23 chr4 173135186 173135486 -29192861 + AluSx SINE Alu 3 297 -15 203 143 0 24 chr4 173135513 173135555 -29192792 + (GAAAA)n Simple_repeat Simple_repeat 3 43 0 * 288 154 0 0 chr4 173135546 173135598 -29192749 + GA-rich Low_complexity Low_complexity 4 55 0 334 312 57 19 chr4 173135645 173135802 -29192545 + L1ME3A LINE L1 5561 5723 -447 412 227 61 0 chr4 173135826 173135958 -29192389 + L1ME3A LINE L1 5808 5947 -223 320 265 85 101 chr4 173136344 173136512 -29191835 - L1MEd LINE L1 -4974 1145 979 2492 71 0 3 chr4 173136512 173136821 -29191526 - AluY SINE Alu -3 308 1 320 265 85 101 chr4 173136821 173136841 -29191506 - L1MEd LINE L1 -5140 979 960 25 31 0 0 chr4 173136899 173136931 -29191416 + AT_rich Low_complexity Low_complexity 1 32 0 1601 122 52 104 chr4 173137095 173137479 -29190868 + THE1B LTR MaLR 1 364 0 9130 133 30 43 chr4 173137482 173139080 -29189267 + THE1C-int LTR MaLR 4 1580 0 1722 189 40 27 chr4 173139080 173139450 -29188897 + THE1C LTR MaLR 1 375 0 1410 175 71 33 chr4 173140161 173140527 -29187820 + LTR55 LTR ERV 1 380 -168 1248 102 79 94 chr4 173141210 173141476 -29186871 + MLT1C LTR MaLR 1 262 -205 1417 168 22 119 chr4 173141476 173141846 -29186501 + MLT1B LTR MaLR 1 334 -56 21 36 0 0 chr4 173142389 173142417 -29185930 + AT_rich Low_complexity Low_complexity 1 28 0 190 330 37 46 chr4 173142916 173143025 -29185322 + L2 LINE L2 315 422 -2892 1433 285 91 69 chr4 173143064 173143886 -29184461 - L2 LINE L2 -540 2774 1935 1528 203 189 12 chr4 173144154 173144582 -29183765 + MLT1D LTR MaLR 2 505 0 21 0 0 0 chr4 173145107 173145128 -29183219 + AT_rich Low_complexity Low_complexity 1 21 0 264 239 35 50 chr4 173146469 173146506 -29181841 + L1MA9 LINE L1 6068 6104 -199 3673 178 36 17 chr4 173146506 173147198 -29181149 - MER44D DNA MER2_type 0 705 1 264 239 35 50 chr4 173147198 173147284 -29181063 + L1MA9 LINE L1 6104 6190 -113 26 64 0 0 chr4 173147394 173147441 -29180906 + AT_rich Low_complexity Low_complexity 1 47 0 340 301 20 48 chr4 173148301 173148447 -29179900 - L2 LINE L2 0 3313 3172 1541 171 22 48 chr4 173148540 173148855 -29179492 - AluJo SINE Alu -5 307 1 4307 192 62 27 chr4 173148941 173149092 -29179255 + Tigger6a DNA MER2_type 1 145 -1452 2504 42 3 23 chr4 173149092 173149402 -29178945 - AluY SINE Alu -7 304 1 4307 192 62 27 chr4 173149402 173150252 -29178095 + Tigger6a DNA MER2_type 145 1083 0 6451 74 30 1 chr4 173150780 173151870 -29176477 + L1PA8 LINE L1 5040 6154 -18 3917 143 36 9 chr4 173151954 173152611 -29175736 + MER39 LTR ERV1 3 677 -30 34 42 0 0 chr4 173153345 173153393 -29174954 + AT_rich Low_complexity Low_complexity 1 48 0 258 342 77 0 chr4 173153575 173153692 -29174655 - MIR SINE MIR -14 248 123 2175 185 53 9 chr4 173153768 173154227 -29174120 - MER31A LTR ERV1 -3 540 1 3246 166 72 9 chr4 173154729 173155397 -29172950 + MER67C LTR ERV1 1 710 0 320 244 215 0 chr4 173156533 173156668 -29171679 + MER110A LTR ERV1 1 164 -304 314 163 51 7 chr4 173156669 173156736 -29171611 + MLT1C LTR MaLR 314 450 -10 249 250 60 36 chr4 173156746 173156830 -29171517 + MER110A LTR ERV1 380 465 -3 27 49 0 0 chr4 173157435 173157476 -29170871 + AT_rich Low_complexity Low_complexity 1 41 0 36 40 0 0 chr4 173158316 173158366 -29169981 + AT_rich Low_complexity Low_complexity 1 50 0 213 189 0 0 chr4 173159571 173159608 -29168739 + L2 LINE L2 3264 3300 -13 231 36 0 0 chr4 173159608 173159636 -29168711 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 2228 57 0 18 chr4 173160856 173161139 -29167208 - AluY SINE Alu -1 310 33 14562 36 3 1 chr4 173161211 173163000 -29165347 - L1P LINE L1 -1607 4539 2746 350 267 68 50 chr4 173163451 173163618 -29164729 + MIR SINE MIR 23 184 -39 23 33 0 0 chr4 173163898 173163928 -29164419 + AT_rich Low_complexity Low_complexity 1 30 0 230 111 0 0 chr4 173163934 173163970 -29164377 + L1MA4A LINE L1 5939 5974 -329 348 278 56 16 chr4 173164047 173164173 -29164174 - MLT1J2 LTR MaLR -289 161 31 452 221 53 0 chr4 173164262 173164357 -29163990 - LTR26B LTR ERV1 0 531 432 2160 144 8 8 chr4 173164363 173164718 -29163629 + THE1A LTR MaLR 1 355 0 1422 47 0 26 chr4 173164718 173164910 -29163437 + THE1A-int LTR MaLR 1 187 -1393 * 2555 23 0 0 chr4 173164905 173165358 -29162989 - L1PA2 LINE L1 -599 5556 5104 4966 16 0 0 chr4 173165358 173165924 -29162423 + L1PA2 LINE L1 5585 6151 -4 10278 94 6 17 chr4 173165924 173167344 -29161003 + THE1A-int LTR MaLR 177 1580 0 2273 124 8 8 chr4 173167344 173167699 -29160648 + THE1A LTR MaLR 1 355 0 2774 177 39 2 chr4 173167699 173168185 -29160162 - LTR26E LTR ERV1 -111 511 8 758 298 43 20 chr4 173168382 173168637 -29159710 + L2 LINE L2 2550 2810 -504 228 163 0 0 chr4 173168708 173168751 -29159596 + (CATA)n Simple_repeat Simple_repeat 2 44 0 234 352 56 56 chr4 173169470 173169539 -29158808 + L2 LINE L2 3116 3184 -88 2197 113 10 0 chr4 173169539 173169839 -29158508 + AluY SINE Alu 1 303 -8 234 352 56 56 chr4 173169839 173169911 -29158436 + L2 LINE L2 3183 3257 -15 668 286 83 26 chr4 173171051 173171471 -29156876 + MLT1J1 LTR MaLR 1 444 -2 599 257 68 40 chr4 173171993 173172215 -29156132 - MIR SINE MIR -33 229 2 21 0 0 0 chr4 173172627 173172648 -29155699 + AT_rich Low_complexity Low_complexity 1 21 0 2076 81 25 0 chr4 173172659 173172942 -29155405 - L1PA13 LINE L1 0 6163 5874 362 211 193 37 chr4 173173061 173173152 -29155195 + REP3 LTR ERV 356 432 -130 1725 157 71 9 chr4 173173152 173173476 -29154871 - MER2 DNA MER2_type 0 344 1 362 211 193 37 chr4 173173476 173173545 -29154802 + REP3 LTR ERV 432 541 -21 554 207 89 85 chr4 173177343 173177613 -29150734 + MER33 DNA MER1_type 54 324 0 5085 206 72 21 chr4 173180565 173183273 -29145074 + L1MC2 LINE L1 3455 6319 -25 233 29 29 0 chr4 173183281 173183315 -29145032 + (TA)n Simple_repeat Simple_repeat 1 35 0 223 356 102 8 chr4 173183650 173183768 -29144579 + L2 LINE L2 2893 3021 -251 240 274 142 9 chr4 173183822 173183935 -29144412 - MER117 DNA MER1_type -65 132 5 1063 202 34 0 chr4 173185452 173185660 -29142687 + MER20 DNA MER1_type 5 219 0 299 340 89 21 chr4 173185873 173186064 -29142283 + L2 LINE L2 2847 3050 -222 30 27 0 0 chr4 173187911 173187948 -29140399 + AT_rich Low_complexity Low_complexity 1 37 0 1992 130 3 7 chr4 173188610 173188929 -29139418 - AluSx SINE Alu 0 318 1 233 243 180 36 chr4 173188971 173189082 -29139265 + MIR SINE MIR 136 262 0 234 89 339 0 chr4 173189705 173189761 -29138586 + MIR3 SINE MIR 125 199 -9 336 331 87 23 chr4 173190236 173190348 -29137999 - MIR3 SINE MIR 0 208 80 1645 136 33 47 chr4 173190348 173190649 -29137698 + AluJb SINE Alu 1 297 -15 336 331 87 23 chr4 173190649 173190708 -29137639 - MIR3 SINE MIR -128 80 26 195 328 202 17 chr4 173190758 173190877 -29137470 - L2 LINE L2 -11 3261 3121 197 302 78 31 chr4 173191894 173192023 -29136324 - L2 LINE L2 -2 3270 3136 722 234 49 22 chr4 173192245 173192429 -29135918 - MER5A DNA MER1_type 0 189 1 320 324 164 27 chr4 173192739 173193184 -29135163 - L2 LINE L2 -586 2728 2223 214 244 12 35 chr4 173194269 173194355 -29133992 + CT-rich Low_complexity Low_complexity 2 85 0 333 0 0 0 chr4 173195556 173195593 -29132754 + (TG)n Simple_repeat Simple_repeat 2 38 0 1795 147 3 14 chr4 173195594 173195886 -29132461 - AluJb SINE Alu -23 289 1 194 277 96 0 chr4 173196759 173196842 -29131505 + MIR SINE MIR 58 148 -60 1244 42 6 12 chr4 173197208 173197374 -29130973 - L1P LINE L1 -1616 4530 4366 * 3164 32 3 0 chr4 173197367 173197743 -29130604 + L1PA4 LINE L1 5753 6129 -26 348 348 48 16 chr4 173199329 173199516 -29128831 - MIR3 SINE MIR -9 199 7 1358 192 73 30 chr4 173199745 173199843 -29128504 - MER2 DNA MER2_type -3 342 250 780 194 0 0 chr4 173199843 173199972 -29128375 + FLAM_C SINE Alu 3 131 -2 1358 192 73 30 chr4 173199972 173200201 -29128146 - MER2 DNA MER2_type -95 250 1 276 30 0 0 chr4 173200277 173200310 -29128037 + (TG)n Simple_repeat Simple_repeat 2 34 0 1042 254 27 16 chr4 173201270 173201526 -29126821 + MIR SINE MIR 4 262 0 180 328 107 41 chr4 173201782 173201904 -29126443 + L2 LINE L2 3138 3267 -5 757 209 198 4 chr4 173203788 173204046 -29124301 + Charlie4a DNA MER1_type 176 483 -25 2274 203 53 11 chr4 173204053 173204527 -29123820 + MLT1D LTR MaLR 12 505 0 180 312 43 21 chr4 173205938 173206031 -29122316 - MIR SINE MIR -109 153 59 1467 200 33 17 chr4 173206041 173206341 -29122006 + AluJb SINE Alu 1 305 -7 233 200 22 0 chr4 173206877 173206922 -29121425 + MER20 DNA MER1_type 174 219 0 330 348 56 6 chr4 173207220 173207398 -29120949 + L2 LINE L2 43 229 -3085 204 383 57 7 chr4 173207471 173207612 -29120735 - MER91A DNA MER1_type -44 152 5 * 211 254 110 68 chr4 173207611 173207628 -29120719 + L2 LINE L2 304 319 -2995 2044 111 5 116 chr4 173207628 173207717 -29120630 - THE1C LTR MaLR 0 375 278 2086 118 7 0 chr4 173207717 173208005 -29120342 - AluSx SINE Alu -22 290 1 2044 111 5 116 chr4 173208005 173208337 -29120010 - THE1C LTR MaLR -97 278 1 211 254 110 68 chr4 173208337 173208437 -29119910 + L2 LINE L2 319 426 -2888 1528 262 69 29 chr4 173208476 173209029 -29119318 - MER90 LTR ERV1 0 575 1 348 315 74 34 chr4 173209030 173209179 -29119168 - L1M4 LINE L1 -2051 4095 3941 233 200 22 0 chr4 173209182 173209227 -29119120 + MER20 DNA MER1_type 174 219 0 1149 263 115 51 chr4 173209287 173210146 -29118201 + L1ME LINE L1 4475 5388 -758 452 279 8 0 chr4 173210211 173210333 -29118014 + L1ME LINE L1 5394 5516 -646 465 324 90 50 chr4 173210336 173210571 -29117776 + MLT1K LTR MaLR 50 301 -287 216 0 0 0 chr4 173210571 173210595 -29117752 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 465 324 90 50 chr4 173210595 173210658 -29117689 + MLT1K LTR MaLR 301 360 -228 1722 178 3 17 chr4 173210687 173210980 -29117367 + AluJb SINE Alu 1 289 -23 594 82 0 0 chr4 173210981 173211066 -29117281 + (GGAA)n Simple_repeat Simple_repeat 1 85 0 387 239 123 18 chr4 173211087 173211250 -29117097 + MLT1K LTR MaLR 409 588 0 400 307 84 34 chr4 173211747 173211985 -29116362 - MIR SINE MIR 0 262 13 2119 126 0 0 chr4 173212473 173212783 -29115564 - AluY SINE Alu -1 310 1 452 309 83 34 chr4 173212885 173213270 -29115077 + L1MC/D LINE L1 5256 5659 -2149 321 161 35 0 chr4 173213279 173213366 -29114981 + (TA)n Simple_repeat Simple_repeat 1 90 0 1778 96 4 31 chr4 173213376 173213637 -29114710 - AluSx SINE Alu -13 299 46 531 240 55 49 chr4 173214491 173214674 -29113673 - MIR SINE MIR 0 262 79 9137 139 9 13 chr4 173214704 173215646 -29112701 - Tigger1 DNA MER2_type 0 2418 1483 2398 80 0 0 chr4 173215646 173215946 -29112401 - AluY SINE Alu -11 300 1 9137 139 9 13 chr4 173215946 173216490 -29111857 - Tigger1 DNA MER2_type -935 1483 938 9128 206 20 13 chr4 173216490 173218533 -29109814 + L1 LINE L1 2434 4490 -1656 5325 143 16 13 chr4 173218535 173218603 -29109744 - Tigger1 DNA MER2_type -1479 939 873 1985 108 0 0 chr4 173218603 173218863 -29109484 - AluSc SINE Alu -14 295 36 5325 143 16 13 chr4 173218863 173219654 -29108693 - Tigger1 DNA MER2_type -1545 873 77 208 250 39 19 chr4 173220000 173220052 -29108295 + MIR SINE MIR 37 89 -173 215 59 0 29 chr4 173220081 173220115 -29108232 + (TTATA)n Simple_repeat Simple_repeat 5 37 0 587 148 0 96 chr4 173220119 173220234 -29108113 + Tigger1 DNA MER2_type 2 105 -2313 1081 139 15 3 chr4 173221911 173222159 -29106188 - AluSc SINE Alu 0 313 1 854 271 45 91 chr4 173222479 173223063 -29105284 - MER31-int LTR ERV1 -1050 3886 3330 241 314 3 17 chr4 173223581 173223667 -29104680 - MER5A DNA MER1_type -87 102 7 391 266 75 79 chr4 173223864 173224116 -29104231 - MER31-int LTR ERV1 -1870 3066 2816 22 70 0 0 chr4 173224258 173224301 -29104046 + AT_rich Low_complexity Low_complexity 1 43 0 2422 56 10 10 chr4 173224587 173224892 -29103455 - AluY SINE Alu -6 305 1 581 228 0 37 chr4 173225684 173225820 -29102527 + MER45A DNA AcHobo 47 177 -1 1695 102 0 4 chr4 173226164 173226408 -29101939 - L1PA7 LINE L1 -3 6151 5909 1805 34 0 0 chr4 173226408 173226617 -29101730 + L1P3 LINE L1 5500 5708 -446 3587 181 53 3 chr4 173276973 173277732 -29050615 - L1MA5 LINE L1 -2 6298 5502 3897 239 63 8 chr4 173277933 173279115 -29049232 - L1M4 LINE L1 -791 5355 4109 197 338 107 75 chr4 173279947 173280388 -29047959 + L2 LINE L2 2818 3272 0 260 324 105 64 chr4 173280491 173280883 -29047464 - LTR16C LTR ERVL -47 444 37 210 37 0 0 chr4 173281086 173281113 -29047234 + (CA)n Simple_repeat Simple_repeat 2 28 0 2675 158 26 14 chr4 173281141 173281346 -29047001 + L1M3 LINE L1 5273 5474 -694 273 29 0 0 chr4 173281346 173281380 -29046967 + (CA)n Simple_repeat Simple_repeat 2 35 0 2675 158 26 14 chr4 173281380 173281681 -29046666 + L1M3 LINE L1 5474 5785 -383 448 108 40 14 chr4 173281686 173281760 -29046587 + AluJ/FLAM SINE Alu 9 84 -228 2142 142 8 84 chr4 173281763 173281833 -29046514 + L1MB1 LINE L1 5725 5799 -369 1649 163 11 28 chr4 173281833 173282116 -29046231 + AluJo SINE Alu 12 289 -23 2142 142 8 84 chr4 173282116 173282523 -29045824 + L1MB1 LINE L1 5799 6166 -2 519 105 0 13 chr4 173282851 173282927 -29045420 + Alu SINE Alu 1 75 -235 2475 170 38 55 chr4 173283392 173283939 -29044408 - L1MB2 LINE L1 -9 6162 5625 1953 175 58 8 chr4 173283956 173284316 -29044031 - MSTB LTR MaLR -8 418 41 8078 35 3 0 chr4 173284331 173286076 -29042271 - L1PA2 LINE L1 -2 6153 4405 240 119 24 0 chr4 173286305 173286347 -29042000 + MADE1 DNA Mariner 1 43 -37 2064 119 0 7 chr4 173286446 173286752 -29041595 - AluSx SINE Alu 0 304 1 21 71 0 0 chr4 173287118 173287160 -29041187 + AT_rich Low_complexity Low_complexity 1 42 0 3651 136 46 2 chr4 173287873 173288498 -29039849 - Tigger3(Golem) DNA MER2_type -3 3026 2374 1893 87 8 8 chr4 173288501 173288754 -29039593 + AluSq SINE Alu 1 253 -60 21 0 0 0 chr4 173292147 173292168 -29036179 + AT_rich Low_complexity Low_complexity 1 21 0 241 185 37 0 chr4 173292265 173292319 -29036028 + L1MC4 LINE L1 6648 6703 -1339 2051 126 0 46 chr4 173292351 173292677 -29035670 + AluSx SINE Alu 1 311 -1 295 143 0 0 chr4 173292683 173292725 -29035622 - FLAM SINE Alu -21 112 71 422 361 11 22 chr4 173294775 173294955 -29033392 + MER5B DNA MER1_type 1 178 0 188 333 49 0 chr4 173295136 173295217 -29033130 - MIR SINE MIR -78 184 100 2812 7 0 0 chr4 173295819 173296122 -29032225 - AluYb8 SINE Alu -15 303 1 220 323 116 18 chr4 173296221 173296385 -29031962 + MIR SINE MIR 79 258 -4 284 145 81 0 chr4 173296811 173296873 -29031474 + MER116 DNA Mariner 14 80 0 609 280 25 95 chr4 173298080 173298405 -29029942 - Charlie8 DNA MER1_type -990 1427 29 1781 174 0 22 chr4 173298658 173298975 -29029372 - AluJo SINE Alu 0 312 3 746 253 48 5 chr4 173299569 173299755 -29028592 + MER58A DNA MER1_type 1 194 -30 21 0 0 0 chr4 173300386 173300407 -29027940 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr4 173301014 173301037 -29027310 + (TG)n Simple_repeat Simple_repeat 1 23 0 1314 197 84 13 chr4 173302665 173302975 -29025372 + MER46B DNA MER2_type 1 207 -29 572 180 18 0 chr4 173302969 173303080 -29025267 + Tigger4(Zombi) DNA MER2_type 2618 2730 -1 * 2742 163 11 2 chr4 173303872 173304350 -29023997 + L1PA16 LINE L1 5679 6160 -6 264 100 0 0 chr4 173307341 173307381 -29020966 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 446 306 48 29 chr4 173308532 173308738 -29019609 + MIR SINE MIR 10 219 -43 389 331 91 8 chr4 173309210 173309331 -29019016 + MER5A DNA MER1_type 58 188 -1 359 270 34 0 chr4 173310008 173310097 -29018250 - MIR3 SINE MIR -30 178 87 281 298 115 19 chr4 173310124 173310228 -29018119 - L2 LINE L2 -5 3308 3195 238 200 100 0 chr4 173313184 173313254 -29015093 - L1ME4a LINE L1 -24 6097 6021 30 0 0 0 chr4 173314117 173314147 -29014200 + AT_rich Low_complexity Low_complexity 1 30 0 4372 251 68 37 chr4 173314255 173318108 -29010239 + L1M3a LINE L1 12 3165 -2869 363 283 92 35 chr4 173318646 173318819 -29009528 - MIR SINE MIR -27 235 53 558 315 72 63 chr4 173318858 173319475 -29008872 - L2 LINE L2 -19 3294 2667 313 312 69 4 chr4 173319475 173319751 -29008596 - L1MEd LINE L1 -3549 2580 2287 1452 213 9 29 chr4 173319885 173320200 -29008147 - AluJo SINE Alu -3 309 1 2097 93 10 54 chr4 173320291 173320604 -29007743 - AluSq SINE Alu -14 299 1 254 312 101 29 chr4 173320847 173320985 -29007362 - L2 LINE L2 -359 2954 2807 410 353 159 0 chr4 173321344 173321596 -29006751 - HAL1 LINE L1 -846 1661 1370 334 344 56 6 chr4 173321654 173321814 -29006533 - L1MEd LINE L1 -5025 1094 927 645 160 0 24 chr4 173322320 173322445 -29005902 - L1PB4 LINE L1 0 6156 6035 1801 176 101 52 chr4 173323532 173324009 -29004338 + MLT1D LTR MaLR 1 500 -5 250 250 45 0 chr4 173324053 173324165 -29004182 + L1ME LINE L1 5767 5883 -238 240 279 16 0 chr4 173324220 173324281 -29004066 - MIR SINE MIR 0 262 201 500 92 0 0 chr4 173324317 173324393 -29003954 + L1PA14 LINE L1 6086 6161 0 515 309 103 2 chr4 173324428 173324626 -29003721 - MIR SINE MIR -50 212 5 279 323 0 11 chr4 173325858 173325951 -29002396 + L2 LINE L2 3221 3312 -1 302 75 0 0 chr4 173327714 173327754 -29000593 - AluY SINE Alu -138 163 124 2259 90 3 0 chr4 173328566 173328876 -28999471 + AluSx SINE Alu 1 311 -1 810 172 50 11 chr4 173329375 173329555 -28998792 + MER5A DNA MER1_type 1 187 -2 1984 147 76 9 chr4 173330191 173330532 -28997815 + THE1B LTR MaLR 1 364 0 954 252 46 0 chr4 173331292 173331317 -28997030 + MIR SINE MIR 13 35 -227 2452 69 0 0 chr4 173331317 173331623 -28996724 + AluY SINE Alu 1 306 -5 954 252 46 0 chr4 173331623 173331835 -28996512 + MIR SINE MIR 35 261 -1 25 31 0 0 chr4 173332715 173332747 -28995600 + AT_rich Low_complexity Low_complexity 1 32 0 197 350 75 21 chr4 173332901 173333232 -28995115 + L2 LINE L2 1912 2260 -1054 201 74 0 0 chr4 173333390 173333417 -28994930 + (CATA)n Simple_repeat Simple_repeat 2 28 0 43 64 0 0 chr4 173333429 173333507 -28994840 + AT_rich Low_complexity Low_complexity 1 78 0 282 215 62 0 chr4 173333819 173333884 -28994463 + MER91B DNA MER1_type 1 69 -71 2436 103 21 34 chr4 173333886 173334266 -28994081 + THE1C LTR MaLR 1 375 0 4323 104 60 83 chr4 173334266 173335056 -28993291 + THE1C-int LTR MaLR 1 771 -809 2248 99 15 21 chr4 173335060 173335392 -28992955 + THE1C LTR MaLR 46 375 0 406 270 10 10 chr4 173335468 173335568 -28992779 + MER91B DNA MER1_type 90 189 -1 2187 125 73 14 chr4 173335585 173335929 -28992418 - THE1B LTR MaLR 0 364 1 666 261 78 38 chr4 173336169 173336348 -28991999 - MLT1G1 LTR MaLR 0 555 385 405 0 0 0 chr4 173336348 173336393 -28991954 + (CTCA)n Simple_repeat Simple_repeat 4 48 0 666 261 78 38 chr4 173336393 173336723 -28991624 - MLT1G1 LTR MaLR -170 385 31 209 122 0 24 chr4 173336826 173336867 -28991480 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 345 286 26 75 chr4 173337234 173337461 -28990886 - L1MC4 LINE L1 -1 8041 7826 699 222 39 24 chr4 173337525 173337732 -28990615 + MER6B DNA MER2_type 1 210 0 2192 117 3 3 chr4 173337903 173338212 -28990135 - AluSx SINE Alu -3 309 1 440 293 106 10 chr4 173338372 173338570 -28989777 + MIR SINE MIR 33 249 -13 308 305 13 32 chr4 173339044 173339198 -28989149 + LTR16C LTR ERVL 335 485 -6 638 292 78 18 chr4 173339552 173339884 -28988463 + LTR16C LTR ERVL 139 490 -1 326 353 59 50 chr4 173340147 173340470 -28987877 + L2 LINE L2 2619 2944 -370 2019 117 7 3 chr4 173341962 173342245 -28986102 + AluSc SINE Alu 3 286 -23 632 261 23 132 chr4 173342365 173342713 -28985634 - L3 LINE CR1 -7 1570 1261 1458 223 104 24 chr4 173343064 173343603 -28984744 + L1ME1 LINE L1 4810 5391 -755 * 10347 79 6 7 chr4 173343575 173345001 -28983346 + L1PA7 LINE L1 3846 5270 -876 1079 87 13 0 chr4 173345002 173345152 -28983195 + L1PA7 LINE L1 5999 6150 -4 2194 232 103 23 chr4 173345153 173345859 -28982488 + L1ME1 LINE L1 5363 6125 -41 426 249 11 54 chr4 173346077 173346262 -28982085 + GA-rich Low_complexity Low_complexity 3 179 0 1916 145 17 0 chr4 173346516 173346806 -28981541 - AluSq SINE Alu -18 295 1 1530 157 143 6 chr4 173347019 173347481 -28980866 + L1M3 LINE L1 5032 5577 -594 369 64 0 0 chr4 173347498 173347545 -28980802 + MSTB LTR MaLR 1 47 -379 29942 45 35 2 chr4 173347546 173351331 -28977016 + L1P LINE L1 1 3912 -2234 432 260 66 71 chr4 173353696 173353892 -28974455 + MIR SINE MIR 24 218 -44 248 202 53 64 chr4 173354041 173354135 -28974212 + L2 LINE L2 3118 3210 -103 400 333 92 44 chr4 173354210 173354438 -28973909 - MIR SINE MIR -22 240 2 442 292 97 53 chr4 173354640 173355000 -28973347 - HAL1 LINE L1 -2123 384 9 306 376 98 6 chr4 173355349 173355522 -28972825 + L2 LINE L2 2918 3106 -166 553 349 45 17 chr4 173355570 173355891 -28972456 + L2 LINE L2 2713 3037 -276 2055 310 101 40 chr4 173356194 173357624 -28970723 - L2 LINE L2 -17 3296 1777 24 0 0 0 chr4 173357753 173357777 -28970570 + AT_rich Low_complexity Low_complexity 1 24 0 753 262 36 24 chr4 173357802 173358138 -28970209 - L1M4 LINE L1 -3622 2524 2185 2695 128 8 5 chr4 173358704 173362281 -28966066 + L1PA10 LINE L1 2461 6158 -10 6802 73 4 7 chr4 173362585 173363909 -28964438 + L1PA8 LINE L1 4850 6171 -1 233 257 48 92 chr4 173364239 173364511 -28963836 - HAL1 LINE L1 -98 2409 2150 673 280 50 37 chr4 173364546 173364846 -28963501 - HAL1 LINE L1 -469 2038 1735 606 279 30 46 chr4 173364935 173365197 -28963150 - L1ME1 LINE L1 -5 6161 5904 916 246 181 108 chr4 173365205 173366228 -28962119 - HAL1 LINE L1 -851 1656 559 895 331 49 44 chr4 173366260 173366831 -28961516 - L1MEd LINE L1 -5491 628 55 723 235 73 31 chr4 173367596 173367856 -28960491 - ORSL DNA AcHobo 0 275 5 22 0 0 0 chr4 173369048 173369070 -28959277 + AT_rich Low_complexity Low_complexity 1 22 0 351 211 145 78 chr4 173369348 173369514 -28958833 + MER5B DNA MER1_type 1 177 -1 25 0 0 0 chr4 173371136 173371161 -28957186 + AT_rich Low_complexity Low_complexity 1 25 0 244 264 42 14 chr4 173372008 173372080 -28956267 + L3 LINE CR1 1365 1438 -139 443 147 202 47 chr4 173372562 173372691 -28955656 + MER53 DNA DNA 4 152 -37 709 347 127 34 chr4 173373007 173373961 -28954386 + L2 LINE L2 1976 3042 -230 197 296 136 53 chr4 173374008 173374140 -28954207 + L2 LINE L2 3159 3301 -12 7264 44 7 0 chr4 173374233 173375125 -28953222 + L1PA7 LINE L1 5254 6151 -3 562 273 104 67 chr4 173375897 173376271 -28952076 + MLT1K LTR MaLR 169 556 -32 865 230 5 0 chr4 173376812 173376999 -28951348 + MER5A DNA MER1_type 2 189 0 369 313 17 0 chr4 173377116 173377231 -28951116 - L2 LINE L2 -6 3307 3191 258 349 102 28 chr4 173377347 173377602 -28950745 - L2 LINE L2 -338 2976 2703 322 276 82 49 chr4 173378223 173378466 -28949881 + L2 LINE L2 2248 2498 -816 332 152 15 0 chr4 173378684 173378750 -28949597 + (TA)n Simple_repeat Simple_repeat 2 68 0 198 313 80 50 chr4 173379202 173379403 -28948944 + L2 LINE L2 3097 3303 -10 577 378 43 36 chr4 173379814 173380305 -28948042 + L2 LINE L2 2779 3266 -6 597 253 134 0 chr4 173383285 173383487 -28944860 - MIR SINE MIR 0 262 34 1689 217 46 32 chr4 173383709 173384143 -28944204 + MLT1D LTR MaLR 1 440 -65 620 202 0 0 chr4 173384143 173384257 -28944090 - L1M2b LINE L1 -6719 490 377 684 199 6 12 chr4 173384388 173384554 -28943793 + L1 LINE L1 4240 4404 -1742 203 137 0 39 chr4 173384704 173384755 -28943592 + (GAAA)n Simple_repeat Simple_repeat 4 52 0 516 32 0 0 chr4 173384883 173384945 -28943402 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 27 49 0 0 chr4 173384982 173385023 -28943324 + AT_rich Low_complexity Low_complexity 1 41 0 23 54 0 0 chr4 173385121 173385158 -28943189 + AT_rich Low_complexity Low_complexity 1 37 0 2065 139 3 0 chr4 173385407 173385709 -28942638 + AluSx SINE Alu 1 303 -9 234 357 108 16 chr4 173386400 173386529 -28941818 - MLT2E LTR ERVL -455 173 33 183 326 88 54 chr4 173386902 173387049 -28941298 + L2 LINE L2 3116 3267 -5 2090 100 0 4 chr4 173387378 173387700 -28940647 + AluSg SINE Alu 1 321 0 250 302 0 0 chr4 173388917 173388980 -28939367 - L2 LINE L2 -68 3204 3142 33 43 0 0 chr4 173389775 173389822 -28938525 + AT_rich Low_complexity Low_complexity 1 47 0 7895 139 11 21 chr4 173389851 173392729 -28935618 + L1PA3 LINE L1 2019 6715 -159 7895 28 0 0 chr4 173392729 173394460 -28933887 + L1PA3 LINE L1 5145 6874 0 7895 139 11 21 chr4 173394460 173394619 -28933728 + L1PA3 LINE L1 6715 6874 0 457 263 188 25 chr4 173395235 173395395 -28932952 + MIR3 SINE MIR 20 205 -3 24 0 0 0 chr4 173395412 173395436 -28932911 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 173395659 173395683 -28932664 + AT_rich Low_complexity Low_complexity 1 24 0 472 279 31 16 chr4 173396327 173396456 -28931891 - L2 LINE L2 -1 3271 3141 447 276 179 37 chr4 173396865 173397133 -28931214 - MER102b DNA MER1_type -35 306 1 532 292 110 38 chr4 173398037 173398273 -28930074 + MIR SINE MIR 8 260 -2 324 192 205 0 chr4 173399446 173399524 -28928823 - Charlie1 DNA MER1_type -2667 94 1 341 288 112 40 chr4 173399562 173399840 -28928507 + HAL1 LINE L1 2125 2422 -85 24 0 0 0 chr4 173399913 173399937 -28928410 + AT_rich Low_complexity Low_complexity 1 24 0 2435 111 28 14 chr4 173399946 173400305 -28928042 - THE1B LTR MaLR 0 364 1 316 260 73 0 chr4 173400308 173400404 -28927943 - MER5A DNA MER1_type -86 103 1 313 191 16 0 chr4 173400432 173400495 -28927852 - MER113 DNA MER1_type? -124 397 334 696 110 0 0 chr4 173400612 173400712 -28927635 - L1PA7 LINE L1 -4 6150 6051 448 338 43 17 chr4 173403972 173404203 -28924144 - MIR SINE MIR -24 238 2 229 342 32 26 chr4 173404222 173404377 -28923970 - L2 LINE L2 -192 3080 2925 336 242 174 15 chr4 173404403 173404535 -28923812 + MIR SINE MIR 61 213 -49 348 299 163 59 chr4 173404563 173405424 -28922923 - L2 LINE L2 -475 2839 1856 2148 89 3 0 chr4 173405424 173405741 -28922606 - AluSx SINE Alu 0 318 1 348 299 163 59 chr4 173405741 173405885 -28922462 - L2 LINE L2 -1458 1856 1728 1618 79 0 5 chr4 173406962 173407176 -28921171 - AluSc SINE Alu -16 293 81 22 0 0 0 chr4 173407229 173407251 -28921096 + AT_rich Low_complexity Low_complexity 1 22 0 1010 234 0 5 chr4 173409129 173409334 -28919013 + MER3 DNA MER1_type 6 209 0 870 351 27 25 chr4 173410543 173411099 -28917248 - ERVL LTR ERVL -700 4954 4402 554 249 103 39 chr4 173411548 173411781 -28916566 + LTR16A1 LTR ERVL 42 289 -168 883 312 189 4 chr4 173411903 173412468 -28915879 - L2 LINE L2 0 3313 2648 1485 321 78 29 chr4 173412471 173413537 -28914810 + MERVL LTR ERVL 2343 3460 -2025 388 295 38 13 chr4 173414127 173414401 -28913946 + LTR16A1 LTR ERVL 148 457 0 487 301 74 0 chr4 173414401 173414564 -28913783 - L2 LINE L2 -983 2331 2157 208 255 0 0 chr4 173415085 173415132 -28913215 + L2 LINE L2 3263 3309 -4 22 35 0 0 chr4 173415883 173415912 -28912435 + AT_rich Low_complexity Low_complexity 1 29 0 292 203 14 43 chr4 173416217 173416286 -28912061 + MER68 LTR ERV1 268 334 -228 1878 213 76 41 chr4 173416624 173417164 -28911183 - MER68 LTR ERV1 -2 560 2 262 195 98 37 chr4 173417788 173417870 -28910477 - MIR SINE MIR -97 165 79 427 342 15 30 chr4 173418664 173418866 -28909481 - MIR SINE MIR -62 200 2 674 246 99 22 chr4 173418930 173419258 -28909089 + LTR40b LTR ERVL 4 416 -103 300 293 0 10 chr4 173419301 173419400 -28908947 - MER69 DNA AcHobo -8 2518 2421 2013 130 0 0 chr4 173419958 173420242 -28908105 + AluSg SINE Alu 1 284 -26 504 48 0 0 chr4 173420250 173420313 -28908034 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 282 303 101 0 chr4 173422740 173422849 -28905498 + MIR SINE MIR 93 212 -50 27 0 0 0 chr4 173423017 173423044 -28905303 + AT_rich Low_complexity Low_complexity 1 27 0 26 64 0 0 chr4 173423816 173423863 -28904484 + AT_rich Low_complexity Low_complexity 1 47 0 235 285 0 0 chr4 173424416 173424497 -28903850 + L1MC/D LINE L1 2948 3028 -3118 436 335 91 30 chr4 173424499 173424962 -28903385 + L1MC/D LINE L1 3106 3596 -2550 246 323 75 41 chr4 173425263 173425625 -28902722 + L1MC/D LINE L1 3849 4222 -1924 358 350 88 25 chr4 173425720 173426128 -28902219 + MLT1J1 LTR MaLR 3 399 -51 433 261 97 93 chr4 173426219 173426856 -28901491 + L1MC/D LINE L1 4387 5026 -1120 595 329 59 31 chr4 173427094 173427483 -28900864 + L1MC/D LINE L1 5293 5692 -2116 198 0 0 0 chr4 173427512 173427534 -28900813 + (A)n Simple_repeat Simple_repeat 1 22 0 986 237 294 30 chr4 173427612 173428173 -28900174 + LTR50 LTR ERVL 70 778 -17 234 267 44 11 chr4 173428185 173428275 -28900072 + L1MC/D LINE L1 5742 5834 -1974 837 137 0 29 chr4 173429019 173429158 -28899189 + FLAM_C SINE Alu 1 135 -8 223 383 72 27 chr4 173429421 173429643 -28898704 + MIR SINE MIR 20 251 -11 468 103 26 0 chr4 173430019 173430097 -28898250 + MADE1 DNA Mariner 1 80 0 728 327 68 32 chr4 173431115 173431616 -28896731 + LTR33 LTR ERVL 1 519 -2 613 275 90 5 chr4 173433073 173433273 -28895074 + MIR SINE MIR 38 254 -8 21 36 0 0 chr4 173433417 173433445 -28894902 + AT_rich Low_complexity Low_complexity 1 28 0 242 313 10 62 chr4 173433717 173433813 -28894534 + MIR SINE MIR 32 122 -140 1596 173 29 39 chr4 173434395 173434707 -28893640 - AluJb SINE Alu -3 309 1 205 40 0 0 chr4 173434964 173434989 -28893358 + (TTTTA)n Simple_repeat Simple_repeat 2 165 0 1150 43 0 0 chr4 173434989 173435127 -28893220 - AluY SINE Alu -30 281 144 207 0 0 0 chr4 173435942 173435965 -28892382 + (CAA)n Simple_repeat Simple_repeat 2 24 0 21 36 0 0 chr4 173436256 173436284 -28892063 + AT_rich Low_complexity Low_complexity 1 28 0 32 57 0 0 chr4 173436629 173436682 -28891665 + AT_rich Low_complexity Low_complexity 1 53 0 7239 33 0 1 chr4 173436725 173437595 -28890752 - L1PA4 LINE L1 -4 6151 5283 2961 227 129 0 chr4 173437596 173438124 -28890223 + L1PA4 LINE L1 4709 5304 -842 41731 60 6 0 chr4 173438690 173444812 -28883535 - L1PA5 LINE L1 -1 6153 2 1333 155 0 10 chr4 173444943 173445150 -28883197 + AluJb SINE Alu 91 295 -17 323 333 16 39 chr4 173445318 173445447 -28882900 + MIR SINE MIR 1 126 -136 4883 200 66 91 chr4 173445681 173446961 -28881386 - L1MC1 LINE L1 -58 6511 5201 2245 89 13 0 chr4 173446961 173447264 -28881083 - AluY SINE Alu -4 307 1 4883 200 66 91 chr4 173447264 173447331 -28881016 - L1MC1 LINE L1 -1368 5201 5134 1774 146 0 48 chr4 173447331 173447626 -28880721 - AluJb SINE Alu -11 301 21 4883 200 66 91 chr4 173447626 173447765 -28880582 - L1MC1 LINE L1 -1435 5134 4993 583 122 0 22 chr4 173447765 173447855 -28880492 - AluJb SINE Alu -139 173 86 4883 200 66 91 chr4 173447855 173449401 -28878946 - L1MC1 LINE L1 -1576 4993 3500 4043 182 55 24 chr4 173449412 173450235 -28878112 - L1MC1 LINE L1 -4819 1565 708 796 22 0 0 chr4 173450235 173450327 -28878020 - L1PA5 LINE L1 -8 6146 6055 4043 182 55 24 chr4 173450327 173450427 -28877920 - L1MC1 LINE L1 -5676 708 613 469 367 15 5 chr4 173450552 173450751 -28877596 + L2 LINE L2 2048 2248 -1066 187 310 35 0 chr4 173450825 173450883 -28877464 + L2 LINE L2 2662 2721 -593 4031 278 77 14 chr4 173450947 173452528 -28875819 + L1ME1 LINE L1 36 1716 -4680 2148 110 0 0 chr4 173452529 173452811 -28875536 + AluSx SINE Alu 1 282 -30 234 78 0 20 chr4 173452825 173452876 -28875471 + LTR66 LTR ERVL 390 439 -171 250 191 0 0 chr4 173452876 173452918 -28875429 + (TA)n Simple_repeat Simple_repeat 2 43 0 330 67 0 0 chr4 173452918 173452963 -28875384 + (CA)n Simple_repeat Simple_repeat 2 46 0 435 230 0 0 chr4 173452977 173453064 -28875283 + L1ME1 LINE L1 1716 1802 -4594 1432 103 0 14 chr4 173453117 173453331 -28875016 - L1PA5 LINE L1 -3 6151 5941 2707 229 44 61 chr4 173453331 173454516 -28873831 + L1ME1 LINE L1 5063 6231 -4 375 323 48 0 chr4 173454516 173454640 -28873707 + L2 LINE L2 2698 2827 -487 699 238 55 11 chr4 173455600 173455781 -28872566 + MER5A DNA MER1_type 1 189 0 589 252 0 19 chr4 173457350 173457509 -28870838 - AluSg/x SINE Alu 0 310 155 377 307 61 0 chr4 173457962 173458076 -28870271 + MIR3 SINE MIR 36 156 -52 2202 112 7 0 chr4 173458176 173458472 -28869875 + AluSx SINE Alu 1 298 -14 357 220 58 58 chr4 173458853 173459026 -28869321 + Charlie7 DNA MER1_type 2440 2612 0 2748 219 88 28 chr4 173460147 173461007 -28867340 - MER63C DNA MER1_type 0 930 19 304 246 0 14 chr4 173461154 173461223 -28867124 + L1MC4 LINE L1 6636 6703 -1339 231 113 48 0 chr4 173461224 173461286 -28867061 + (TA)n Simple_repeat Simple_repeat 1 65 0 419 270 60 30 chr4 173462501 173462856 -28865491 + L1MEc LINE L1 2677 3086 -3129 1811 165 40 18 chr4 173462866 173463193 -28865154 + MER2 DNA MER2_type 2 335 -10 311 233 124 16 chr4 173463220 173463349 -28864998 + L1MEc LINE L1 3095 3237 -2978 3446 204 76 19 chr4 173463397 173464624 -28863723 + L1MB8 LINE L1 4908 6178 0 23 0 0 0 chr4 173464935 173464958 -28863389 + AT_rich Low_complexity Low_complexity 1 23 0 238 339 64 58 chr4 173465499 173465670 -28862677 - MIR SINE MIR -26 236 65 2445 41 3 3 chr4 173465852 173466147 -28862200 - AluY SINE Alu -16 295 1 21 36 0 0 chr4 173466330 173466358 -28861989 + AT_rich Low_complexity Low_complexity 1 28 0 393 327 72 7 chr4 173468306 173468459 -28859888 - L2 LINE L2 -518 2796 2634 182 238 224 49 chr4 173468529 173468672 -28859675 - L2 LINE L2 -917 2397 2230 492 292 76 35 chr4 173468707 173468878 -28859469 + MER5B DNA MER1_type 1 178 0 180 375 52 26 chr4 173469499 173469691 -28858656 + L2 LINE L2 2148 2344 -970 187 345 73 9 chr4 173469698 173469808 -28858539 - L2 LINE L2 -672 2642 2526 21 0 0 0 chr4 173470135 173470156 -28858191 + AT_rich Low_complexity Low_complexity 1 21 0 2695 206 23 16 chr4 173472254 173472887 -28855460 - Tigger7 DNA MER2_type -51 2536 11 22 0 0 0 chr4 173473086 173473108 -28855239 + AT_rich Low_complexity Low_complexity 1 22 0 189 107 0 0 chr4 173473498 173473526 -28854821 + (T)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr4 173473536 173473559 -28854788 + AT_rich Low_complexity Low_complexity 1 23 0 3668 7 0 2 chr4 173473559 173473978 -28854369 - L1HS LINE L1 0 6155 5738 3100 16 0 11 chr4 173473966 173474330 -28854017 + L1P1 LINE L1 5359 5718 -437 * 1517 240 49 14 chr4 173476657 173477103 -28851244 - LTR40b LTR ERVL 0 462 1 827 91 25 0 chr4 173477305 173477426 -28850921 - L1PA16 LINE L1 -10 6156 6033 1670 140 119 53 chr4 173477486 173477865 -28850482 + L1MA9 LINE L1 5909 6312 0 1895 167 20 0 chr4 173478020 173478361 -28849986 + L1MC1 LINE L1 5981 6328 -5 309 206 113 31 chr4 173479158 173479255 -28849092 + MIR SINE MIR 82 186 -76 389 253 195 7 chr4 173479453 173479607 -28848740 + MIR SINE MIR 72 254 -8 3908 155 5 1 chr4 173479776 173480446 -28847901 - L1PA16 LINE L1 -11 6155 5484 1739 102 16 8 chr4 173480446 173480695 -28847652 - L1PA10 LINE L1 0 6168 5911 1168 166 18 81 chr4 173480699 173480885 -28847462 - L1PA16 LINE L1 -674 5492 5296 1559 129 43 14 chr4 173480885 173481163 -28847184 - L1PA13 LINE L1 0 6163 5878 1168 166 18 81 chr4 173481163 173481418 -28846929 - L1PA16 LINE L1 -870 5296 5069 182 352 0 28 chr4 173481430 173481501 -28846846 + L2 LINE L2 3168 3236 -36 211 329 43 0 chr4 173481937 173482007 -28846340 + MIR SINE MIR 105 177 -85 396 0 0 0 chr4 173482371 173482415 -28845932 + (CA)n Simple_repeat Simple_repeat 2 45 0 496 305 171 9 chr4 173483526 173483736 -28844611 - MIR SINE MIR -17 245 2 2290 156 25 28 chr4 173483990 173484425 -28843922 + Tigger2a DNA MER2_type 1 434 0 504 81 0 0 chr4 173484667 173484741 -28843606 + (CA)n Simple_repeat Simple_repeat 2 75 0 722 198 32 19 chr4 173485320 173485477 -28842870 + MER20 DNA MER1_type 56 214 -5 244 250 29 106 chr4 173485489 173485506 -28842841 - MER5A DNA MER1_type -28 161 144 1510 219 67 15 chr4 173485506 173485849 -28842498 - MLT1A1 LTR MaLR 0 365 5 244 250 29 106 chr4 173485849 173485935 -28842412 - MER5A DNA MER1_type -45 144 66 360 225 124 0 chr4 173486158 173486247 -28842100 + MER5A DNA MER1_type 13 112 -77 1408 207 110 62 chr4 173486464 173486918 -28841429 - MLT1E2 LTR MaLR 0 624 136 276 196 0 0 chr4 173486966 173487012 -28841335 - MLT1E2 LTR MaLR -578 46 1 1702 175 96 0 chr4 173488178 173488492 -28839855 + MER2 DNA MER2_type 1 344 -1 2028 131 17 3 chr4 173488648 173488939 -28839408 - AluSx SINE Alu -15 297 3 216 211 0 0 chr4 173488995 173489033 -28839314 - MIR SINE MIR -108 154 117 462 285 175 39 chr4 173489112 173489629 -28838718 + L2 LINE L2 2703 3309 -4 547 332 19 25 chr4 173490215 173490478 -28837869 - MIR SINE MIR 0 262 3 39 38 0 0 chr4 173490506 173490559 -28837788 + AT_rich Low_complexity Low_complexity 1 53 0 202 389 0 11 chr4 173490791 173490881 -28837466 + L2 LINE L2 3175 3263 -9 253 222 28 74 chr4 173491897 173491909 -28836438 - L1MA9 LINE L1 -1 6311 6300 2557 230 51 16 chr4 173491909 173492713 -28835634 - L1ME1 LINE L1 -4 6162 5294 1949 162 70 12 chr4 173492735 173493137 -28835210 + L1PB4 LINE L1 5730 6154 -2 21 0 0 0 chr4 173494549 173494570 -28833777 + AT_rich Low_complexity Low_complexity 1 21 0 378 306 65 52 chr4 173494933 173495181 -28833166 + MLT1K LTR MaLR 98 348 -240 2013 120 3 23 chr4 173495209 173495518 -28832829 + AluSx SINE Alu 1 303 -9 2013 136 7 0 chr4 173496536 173496846 -28831501 + AluSx SINE Alu 1 312 0 430 284 115 11 chr4 173497248 173497431 -28830916 - MIR SINE MIR -4 258 57 259 359 47 6 chr4 173497439 173497609 -28830738 - LTR67 LTR ERVL -8 549 373 236 298 0 0 chr4 173497629 173497686 -28830661 - MER96 DNA MER1_type? -118 57 1 * 241 172 0 52 chr4 173497686 173497730 -28830617 - MLT1J LTR MaLR -364 147 107 1981 195 81 31 chr4 173499897 173500378 -28827969 + MLT1D LTR MaLR 1 505 0 4505 206 25 6 chr4 173500799 173502386 -28825961 + L1MB2 LINE L1 4556 6169 -2 3918 208 79 2 chr4 173502397 173503346 -28825001 - L1MD3 LINE L1 -14 7981 6960 1197 96 20 15 chr4 173503447 173503645 -28824702 + L1PA13 LINE L1 5946 6144 -19 27 29 0 0 chr4 173503648 173503682 -28824665 + AT_rich Low_complexity Low_complexity 1 34 0 344 276 76 28 chr4 173503685 173503830 -28824517 - MER5A DNA MER1_type -6 183 32 307 255 83 76 chr4 173503703 173503848 -28824499 + MER5A DNA MER1_type 37 182 -7 * 184 289 0 0 chr4 173507183 173507221 -28821126 + L2 LINE L2 3214 3251 -21 1946 186 84 26 chr4 173507687 173508150 -28820197 + LTR2B LTR ERV1 1 490 0 328 270 80 0 chr4 173508821 173508958 -28819389 - L1M4 LINE L1 -1429 4717 4570 2281 107 0 0 chr4 173509105 173509405 -28818942 - AluSq SINE Alu -12 301 2 2568 135 14 25 chr4 173509607 173510044 -28818303 - Tigger2a DNA MER2_type -2 432 1 1363 96 0 0 chr4 173510098 173510275 -28818072 - AluSg/x SINE Alu -7 303 127 330 292 62 52 chr4 173510466 173510658 -28817689 - L1MEd LINE L1 -4076 2234 2041 747 291 79 42 chr4 173511118 173511203 -28817144 - L1MEd LINE L1 -4862 1257 1177 348 64 0 0 chr4 173511203 173511250 -28817097 + (TG)n Simple_repeat Simple_repeat 1 47 0 747 291 79 42 chr4 173511250 173511903 -28816444 - L1MEd LINE L1 -4942 1177 606 1057 239 30 91 chr4 173511913 173512311 -28816036 + MLT1A2 LTR MaLR 1 374 0 666 227 5 69 chr4 173512916 173513119 -28815228 - MER3 DNA MER1_type 0 209 20 26 0 0 0 chr4 173513329 173513355 -28814992 + AT_rich Low_complexity Low_complexity 1 26 0 347 111 403 0 chr4 173513591 173513663 -28814684 - L1PA16 LINE L1 -514 5647 5547 2727 160 44 2 chr4 173513663 173514164 -28814183 + L1PA16 LINE L1 5644 6165 -1 35 41 0 0 chr4 173514185 173514234 -28814113 + AT_rich Low_complexity Low_complexity 1 49 0 934 255 47 16 chr4 173515406 173515728 -28812619 - L1ME3 LINE L1 -2 6160 5829 1358 202 0 4 chr4 173517141 173517384 -28810963 - AluJb SINE Alu -49 263 22 1709 65 0 5 chr4 173518205 173518421 -28809926 - AluY SINE Alu -11 300 86 244 290 121 32 chr4 173519112 173519236 -28809111 + MIR SINE MIR 98 232 -30 2076 135 0 10 chr4 173519729 173520040 -28808307 - AluSg1 SINE Alu -1 308 1 4236 161 18 5 chr4 173520475 173521250 -28807097 - L1MC1 LINE L1 -5 6328 5544 792 266 120 67 chr4 173521829 173522452 -28805895 + L1MEd LINE L1 445 1110 -5009 3201 92 11 4 chr4 173522452 173522907 -28805440 - LTR22A LTR ERVK 0 458 1 792 266 120 67 chr4 173522907 173522975 -28805372 + L1MEd LINE L1 1110 1173 -4946 404 155 0 0 chr4 173522970 173523041 -28805306 - L1MC1 LINE L1 -1463 4683 4613 * 1416 221 59 81 chr4 173523653 173524318 -28804029 - L1MC1 LINE L1 -1610 4536 3887 1796 152 14 24 chr4 173524409 173524706 -28803641 + AluSx SINE Alu 1 294 -18 2259 78 0 0 chr4 173524857 173525184 -28803163 + AluY SINE Alu 1 327 0 1285 299 97 45 chr4 173525188 173525761 -28802586 + L1M4 LINE L1 3504 4046 -2100 369 0 0 0 chr4 173525761 173525802 -28802545 + (TG)n Simple_repeat Simple_repeat 2 42 0 762 219 26 13 chr4 173525804 173525959 -28802388 - FAM SINE Alu -18 157 1 1285 299 97 45 chr4 173525959 173526433 -28801914 + L1M4 LINE L1 4046 4494 -1652 207 0 0 0 chr4 173526433 173526456 -28801891 + (TG)n Simple_repeat Simple_repeat 1 23 0 1285 299 97 45 chr4 173526456 173526918 -28801429 + L1M4 LINE L1 4494 5096 -1050 271 375 96 7 chr4 173527024 173527160 -28801187 + MIR SINE MIR 2 149 -113 303 322 78 16 chr4 173527314 173527559 -28800788 + L1M4 LINE L1 5318 5577 -601 25 51 0 0 chr4 173527704 173527743 -28800604 + AT_rich Low_complexity Low_complexity 1 39 0 202 311 0 0 chr4 173527743 173527804 -28800543 + MIR3 SINE MIR 137 197 -11 21 36 0 0 chr4 173527880 173527908 -28800439 + AT_rich Low_complexity Low_complexity 1 28 0 394 281 215 29 chr4 173528651 173528893 -28799454 - MLT1K LTR MaLR -64 524 238 931 237 19 9 chr4 173529615 173529826 -28798521 + MER20 DNA MER1_type 2 214 -5 2286 77 3 22 chr4 173530857 173531168 -28797179 + AluSc SINE Alu 1 305 -4 196 313 125 10 chr4 173533011 173533107 -28795240 - MIR SINE MIR -62 146 40 1816 225 27 41 chr4 173534447 173534959 -28793388 - MLT1D LTR MaLR 0 505 1 1334 229 72 26 chr4 173535662 173536251 -28792096 - MLT2F LTR ERVL -2 661 1 23 0 0 0 chr4 173536496 173536519 -28791828 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chr4 173538616 173538658 -28789689 + AT_rich Low_complexity Low_complexity 1 42 0 2233 109 3 3 chr4 173538774 173539086 -28789261 - AluSx SINE Alu 0 312 1 768 278 10 24 chr4 173540350 173540559 -28787788 + MIR SINE MIR 31 236 -26 357 340 93 0 chr4 173540718 173540912 -28787435 + MLT1J2 LTR MaLR 1 212 -238 1101 283 192 6 chr4 173541098 173541599 -28786748 + LTR50 LTR ERVL 1 594 -201 410 271 254 32 chr4 173542862 173543209 -28785138 + MLT1J2 LTR MaLR 1 424 -26 22 0 0 0 chr4 173543288 173543310 -28785037 + AT_rich Low_complexity Low_complexity 1 22 0 187 373 87 16 chr4 173543350 173543476 -28784871 + MIR SINE MIR 16 150 -58 2265 141 14 6 chr4 173544000 173544362 -28783985 + MLT1A1 LTR MaLR 1 365 0 23 33 0 0 chr4 173547520 173547550 -28780797 + AT_rich Low_complexity Low_complexity 1 30 0 1922 129 7 14 chr4 173547935 173548263 -28780084 + AluSx SINE Alu 1 326 0 262 243 207 27 chr4 173548964 173549075 -28779272 - L2 LINE L2 -5 3267 3137 2078 109 20 3 chr4 173550572 173550865 -28777482 - AluSq SINE Alu -13 300 3 2996 264 55 21 chr4 173551209 173552599 -28775748 + L1MC3 LINE L1 1 1443 -4848 * 10012 200 69 20 chr4 173552588 173555805 -28772542 + L1MC3 LINE L1 4703 8080 -123 25 51 0 0 chr4 173556854 173556893 -28771454 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr4 173556925 173556951 -28771396 + AT_rich Low_complexity Low_complexity 1 26 0 38 51 0 0 chr4 173557687 173557746 -28770601 + AT_rich Low_complexity Low_complexity 1 59 0 696 286 126 71 chr4 173557778 173558385 -28769962 - MER77 LTR ERV1 -7 598 98 26 64 0 0 chr4 173558664 173558711 -28769636 + AT_rich Low_complexity Low_complexity 1 47 0 201 283 0 0 chr4 173559758 173559811 -28768536 + (TA)n Simple_repeat Simple_repeat 1 53 0 28 0 0 0 chr4 173561675 173561703 -28766644 + AT_rich Low_complexity Low_complexity 1 28 0 2962 121 17 2 chr4 173561846 173562324 -28766023 + L1MA5 LINE L1 5813 6297 -3 234 150 0 0 chr4 173563539 173563579 -28764768 + (TG)n Simple_repeat Simple_repeat 2 41 0 2502 21 0 0 chr4 173563637 173563970 -28764377 + AluY SINE Alu 1 333 0 510 331 112 28 chr4 173567186 173567743 -28760604 + L1ME4a LINE L1 5314 5945 -176 2228 109 0 0 chr4 173568569 173568873 -28759474 - AluSx SINE Alu -8 304 1 221 213 75 12 chr4 173569685 173569765 -28758582 + (CATATA)n Simple_repeat Simple_repeat 6 90 0 25 0 0 0 chr4 173570313 173570338 -28758009 + AT_rich Low_complexity Low_complexity 1 25 0 533 186 62 0 chr4 173571396 173571493 -28756854 + FLAM_A SINE Alu 4 106 -36 191 167 24 0 chr4 173571497 173571539 -28756808 + GA-rich Low_complexity Low_complexity 2 44 0 260 271 82 0 chr4 173571728 173571813 -28756534 - MIR SINE MIR 0 262 171 1479 201 23 40 chr4 173571827 173572255 -28756092 + MLT2B1 LTR ERVL 1 477 -43 303 209 44 0 chr4 173572255 173572346 -28756001 + (TA)n Simple_repeat Simple_repeat 1 95 0 325 105 18 18 chr4 173572346 173572403 -28755944 + MLT2B1 LTR ERVL 464 520 0 2000 151 0 0 chr4 173572485 173572790 -28755557 + AluSx SINE Alu 6 310 -2 485 267 154 51 chr4 173572798 173573071 -28755276 - MER46C DNA MER2_type -19 319 19 4439 64 25 26 chr4 173573788 173574397 -28753950 + LTR14B LTR ERVK 1 608 0 1356 123 0 28 chr4 173574397 173574609 -28753738 + AluSg/x SINE Alu 98 303 -9 202 373 49 10 chr4 173574691 173574793 -28753554 + MIR SINE MIR 35 140 -122 199 355 86 25 chr4 173575400 173575597 -28752750 - MIR SINE MIR -19 243 35 39 22 0 0 chr4 173576525 173576571 -28751776 + AT_rich Low_complexity Low_complexity 1 46 0 478 273 216 6 chr4 173576597 173576773 -28751574 - MIR SINE MIR -28 234 22 266 309 64 0 chr4 173576920 173577014 -28751333 - MIR SINE MIR -107 155 56 556 186 44 9 chr4 173577121 173577234 -28751113 - L1PA7 LINE L1 -9 6145 6029 1798 335 116 52 chr4 173577426 173580308 -28748039 + L2 LINE L2 189 3259 -13 23 0 0 0 chr4 173581441 173581464 -28746883 + AT_rich Low_complexity Low_complexity 1 23 0 941 180 104 4 chr4 173581464 173581714 -28746633 - L1MA4 LINE L1 0 6300 6026 5228 22 0 0 chr4 173583136 173583926 -28744421 + L1P1 LINE L1 4776 5565 -590 4224 136 21 0 chr4 173583942 173584596 -28743751 - L1PA15 LINE L1 -135 6030 5363 24 53 0 0 chr4 173585250 173585288 -28743059 + AT_rich Low_complexity Low_complexity 1 38 0 262 317 149 24 chr4 173585401 173585650 -28742697 - L2 LINE L2 -15 3298 3019 405 39 0 0 chr4 173586873 173586924 -28741423 + (CA)n Simple_repeat Simple_repeat 1 51 0 462 136 0 25 chr4 173587056 173587137 -28741210 + MADE1 DNA Mariner 1 79 -1 289 291 22 22 chr4 173587840 173587974 -28740373 - 7SK RNA RNA -59 134 1 22 0 0 0 chr4 173588529 173588551 -28739796 + AT_rich Low_complexity Low_complexity 1 22 0 228 237 43 0 chr4 173589120 173589213 -28739134 + (TA)n Simple_repeat Simple_repeat 2 98 0 761 134 8 8 chr4 173589494 173589621 -28738726 + FLAM_C SINE Alu 2 128 -5 27 0 0 0 chr4 173589637 173589664 -28738683 + AT_rich Low_complexity Low_complexity 1 27 0 233 172 62 47 chr4 173589981 173590045 -28738302 + LTR50 LTR ERVL 729 793 -2 1376 196 0 26 chr4 173590163 173590429 -28737918 + AluJo SINE Alu 1 259 -53 32 26 0 0 chr4 173590445 173590484 -28737863 + AT_rich Low_complexity Low_complexity 1 39 0 189 0 0 0 chr4 173591444 173591465 -28736882 + (TTA)n Simple_repeat Simple_repeat 3 23 0 5799 27 0 1 chr4 173591466 173592142 -28736205 - L1PA4 LINE L1 -16 6139 5465 2860 21 0 0 chr4 173592143 173592526 -28735821 + L1PA4 LINE L1 5056 5438 -717 1660 21 0 0 chr4 173593317 173593507 -28734840 - L1PA3 LINE L1 -4 6151 5962 988 0 0 0 chr4 173593507 173593619 -28734728 + L1PA3 LINE L1 5841 5952 -203 1457 234 3 3 chr4 173593742 173594041 -28734306 - AluJo SINE Alu -11 301 3 23 0 0 0 chr4 173594051 173594074 -28734273 + AT_rich Low_complexity Low_complexity 1 23 0 2119 174 20 0 chr4 173594214 173594605 -28733742 + MER57A LTR ERV1 5 403 0 2442 53 0 0 chr4 173595076 173595406 -28732941 - AluY SINE Alu 0 330 1 226 298 18 0 chr4 173596098 173596155 -28732192 - MIR SINE MIR -162 100 43 407 256 82 17 chr4 173596234 173596527 -28731820 + L1M4 LINE L1 2167 2478 -3668 21 57 0 0 chr4 173646944 173646979 -28681368 + AT_rich Low_complexity Low_complexity 1 35 0 492 240 174 78 chr4 173647770 173648257 -28680090 + MLT1F LTR MaLR 1 534 -8 740 188 90 7 chr4 173648638 173648782 -28679565 - MER5A DNA MER1_type -33 156 1 493 255 137 64 chr4 173649516 173649720 -28678627 - MIR SINE MIR -24 238 20 221 209 0 0 chr4 173650752 173650795 -28677552 + L2 LINE L2 3261 3303 -10 491 275 97 24 chr4 173650824 173651031 -28677316 - MIR SINE MIR -13 249 28 302 311 25 8 chr4 173651347 173651466 -28676881 - L2 LINE L2 -493 2821 2701 240 146 0 0 chr4 173651830 173651871 -28676476 - MLT2D LTR ERVL 0 515 475 1175 218 21 28 chr4 173651919 173652203 -28676144 - MLT2D LTR ERVL -41 373 92 21 0 0 0 chr4 173653225 173653246 -28675101 + AT_rich Low_complexity Low_complexity 1 21 0 760 222 86 12 chr4 173654001 173654251 -28674096 + MLT1C LTR MaLR 177 467 0 248 404 60 14 chr4 173654614 173654832 -28673515 + L3 LINE CR1 1343 1570 -7 288 0 0 0 chr4 173655159 173655191 -28673156 + (CA)n Simple_repeat Simple_repeat 2 33 0 27 49 0 0 chr4 173655327 173655368 -28672979 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr4 173655590 173655614 -28672733 + AT_rich Low_complexity Low_complexity 1 24 0 3651 158 89 7 chr4 173655685 173656402 -28671945 - L1MA8 LINE L1 -80 6211 5436 267 172 47 0 chr4 173656400 173656464 -28671883 + L1MA8 LINE L1 6203 6269 -22 * 22 0 0 0 chr4 173656632 173656654 -28671693 + AT_rich Low_complexity Low_complexity 1 22 0 337 262 138 11 chr4 173656919 173657123 -28671224 - MIR SINE MIR 0 262 66 22 70 0 0 chr4 173657459 173657502 -28670845 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 173658276 173658298 -28670049 + AT_rich Low_complexity Low_complexity 1 22 0 724 317 42 33 chr4 173658743 173659169 -28669178 + L1MEc LINE L1 92 521 -5875 2484 63 0 25 chr4 173660873 173661191 -28667156 + AluY SINE Alu 1 310 -1 2092 240 12 43 chr4 173661213 173661463 -28666884 + L1M1 LINE L1 3045 3301 -4264 387 0 0 0 chr4 173661463 173661506 -28666841 + (TG)n Simple_repeat Simple_repeat 2 44 0 2092 240 12 43 chr4 173661506 173662404 -28665943 + L1M1 LINE L1 3301 4159 -3406 1661 169 8 0 chr4 173662913 173663179 -28665168 + AluJb SINE Alu 1 268 -44 477 316 53 22 chr4 173663463 173663691 -28664656 + LTR33 LTR ERVL 191 425 -96 24 0 0 0 chr4 173664530 173664554 -28663793 + AT_rich Low_complexity Low_complexity 1 24 0 273 291 128 0 chr4 173664574 173664715 -28663632 + L1ME LINE L1 5512 5670 -451 21 36 0 0 chr4 173664898 173664926 -28663421 + AT_rich Low_complexity Low_complexity 1 28 0 220 224 0 15 chr4 173665599 173665666 -28662681 + (TA)n Simple_repeat Simple_repeat 1 66 0 2658 114 36 2 chr4 173666758 173667212 -28661135 - MSTA-int LTR MaLR -1164 416 1 1424 173 227 14 chr4 173667212 173667565 -28660782 - MSTA LTR MaLR 0 428 1 573 235 0 0 chr4 173668229 173668348 -28659999 + AluSq/x SINE Alu 1 119 -194 276 100 0 0 chr4 173670053 173670093 -28658254 + (GA)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chr4 173670809 173670830 -28657517 + AT_rich Low_complexity Low_complexity 1 21 0 2552 223 4 2 chr4 173670851 173671418 -28656929 + L1M3f LINE L1 2 626 -4702 2916 204 37 13 chr4 173671442 173671577 -28656770 + L1M3f LINE L1 708 838 -5004 201 39 0 0 chr4 173671577 173671603 -28656744 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2916 204 37 13 chr4 173671603 173672514 -28655833 + L1M3f LINE L1 838 1777 -4065 1020 339 51 32 chr4 173672920 173673484 -28654863 - L1PA13 LINE L1 -6209 578 4 273 196 18 0 chr4 173673519 173673575 -28654772 + MER3 DNA MER1_type 153 209 0 374 197 74 25 chr4 173673652 173673774 -28654573 + L1MEc LINE L1 1868 1995 -4401 391 246 25 0 chr4 173673787 173673909 -28654438 + L1M4 LINE L1 4892 5016 -1130 1397 118 19 14 chr4 173673912 173674124 -28654223 - AluSq SINE Alu -18 295 83 314 257 22 15 chr4 173674125 173674261 -28654086 + L1M4 LINE L1 4992 5128 -1018 3493 18 4 0 chr4 173674361 173674832 -28653515 - L1P1 LINE L1 -490 5665 5193 * 4770 26 2 2 chr4 173674829 173675404 -28652943 + L1P1 LINE L1 4605 5179 -967 441 331 88 0 chr4 173676149 173676309 -28652038 + LTR33 LTR ERVL 38 211 -310 230 303 0 13 chr4 173676490 173676566 -28651781 + LTR33 LTR ERVL 447 521 0 898 134 11 17 chr4 173679282 173679461 -28648886 - L1P LINE L1 -2767 3379 3202 * 8068 142 2 3 chr4 173679458 173680816 -28647531 - L1P LINE L1 -2103 4043 2687 1785 125 4 0 chr4 173680818 173681098 -28647249 + L1P LINE L1 4635 4915 -1231 711 129 69 0 chr4 173681098 173681214 -28647133 + AluSg/x SINE Alu 179 302 -7 2341 117 3 0 chr4 173681214 173681564 -28646783 + L1P LINE L1 4913 5263 -883 224 128 0 21 chr4 173681697 173681744 -28646603 + (CCCCCT)n Simple_repeat Simple_repeat 4 49 0 734 281 80 27 chr4 173681867 173682576 -28645771 + L1MEc LINE L1 786 1339 -4876 328 270 43 18 chr4 173682581 173682744 -28645603 + L1MEc LINE L1 1573 1739 -4657 994 260 117 35 chr4 173682807 173683279 -28645068 + L1MEc LINE L1 1986 2418 -3797 4886 109 14 6 chr4 173683279 173683997 -28644350 + L1PA10 LINE L1 5434 6157 -11 994 260 117 35 chr4 173683997 173684506 -28643841 + L1MEc LINE L1 2418 3019 -3196 183 320 90 51 chr4 173685830 173686008 -28642339 + MER5A DNA MER1_type 2 186 -3 21 0 0 0 chr4 173686596 173686617 -28641730 + AT_rich Low_complexity Low_complexity 1 21 0 5146 174 22 21 chr4 173686995 173687029 -28641318 + L1M1 LINE L1 4232 4264 -2036 1898 100 9 97 chr4 173687029 173687360 -28640987 - AluSx SINE Alu -10 302 1 5146 174 22 21 chr4 173687360 173688705 -28639642 + L1M1 LINE L1 4264 5611 -689 3135 260 54 26 chr4 173688700 173689858 -28638489 + L1PA16 LINE L1 107 1976 -5589 * 1575 255 54 55 chr4 173690125 173691192 -28637155 + L1M2 LINE L1 4425 5481 -712 344 290 10 10 chr4 173691862 173691962 -28636385 + L1PA16 LINE L1 2064 2163 -5399 13201 222 24 19 chr4 173692196 173697547 -28630800 + L1PA16 LINE L1 2163 7540 -45 440 272 39 39 chr4 173697547 173697727 -28630620 - MER3 DNA MER1_type -29 180 1 1900 175 82 12 chr4 173697967 173698367 -28629980 - MSTA LTR MaLR 0 428 1 2142 133 0 0 chr4 173698439 173698741 -28629606 - AluSx SINE Alu -10 302 1 454 310 86 11 chr4 173698965 173699139 -28629208 + MIR3 SINE MIR 16 202 -6 56 71 0 0 chr4 173699250 173699362 -28628985 + AT_rich Low_complexity Low_complexity 1 112 0 222 210 86 0 chr4 173701015 173701096 -28627251 + (TTAAA)n Simple_repeat Simple_repeat 5 92 0 2530 45 6 10 chr4 173701591 173701903 -28626444 - AluY SINE Alu 0 311 1 185 238 0 0 chr4 173704856 173704898 -28623449 + L2 LINE L2 3272 3313 0 264 149 0 0 chr4 173704900 173704947 -28623400 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 358 372 7 7 chr4 173705300 173705437 -28622910 - L3 LINE CR1 -410 1167 1031 201 363 59 0 chr4 173705462 173705564 -28622783 - L2 LINE L2 0 3272 3165 3613 68 0 6 chr4 173706315 173706788 -28621559 + L1PA7 LINE L1 5678 6147 -7 2213 79 3 35 chr4 173706975 173707290 -28621057 - AluY SINE Alu -6 305 1 368 289 187 45 chr4 173707619 173707993 -28620354 - MLT1H LTR MaLR 0 549 123 575 281 14 7 chr4 173708202 173708341 -28620006 + MIR SINE MIR 22 161 -101 2004 278 64 4 chr4 173708343 173708889 -28619458 + MLT1G LTR MaLR 1 579 -11 1112 260 120 20 chr4 173708992 173709392 -28618955 + MLT2B2 LTR ERVL 2 441 -74 1405 248 88 44 chr4 173710546 173711111 -28617236 + MLT1G LTR MaLR 1 590 0 28 29 0 0 chr4 173711224 173711259 -28617088 + AT_rich Low_complexity Low_complexity 1 35 0 750 283 49 8 chr4 173712488 173712732 -28615615 - MIR SINE MIR -7 255 2 804 181 81 0 chr4 173712816 173712976 -28615371 - AluJo SINE Alu -13 299 127 2545 169 59 11 chr4 173713084 173713646 -28614701 + L1MA4 LINE L1 2407 2995 -4570 1914 120 3 87 chr4 173713646 173713979 -28614368 + AluSc SINE Alu 3 307 -2 1996 194 39 23 chr4 173713980 173714802 -28613545 + L1MA4 LINE L1 3229 4067 -3498 * 5112 165 36 26 chr4 173714798 173715862 -28612485 + L1MA4 LINE L1 6139 7233 -486 1953 124 60 30 chr4 173715862 173716226 -28612121 - THE1C LTR MaLR 0 375 1 5112 165 36 26 chr4 173716226 173716707 -28611640 + L1MA4 LINE L1 7233 7708 -11 493 283 70 41 chr4 173716738 173717108 -28611239 + L1M1 LINE L1 5131 5596 -1969 252 0 0 0 chr4 173717347 173717375 -28610972 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1947 237 51 36 chr4 173717622 173718128 -28610219 - LTR40a LTR ERVL 0 519 6 1030 248 34 15 chr4 173718921 173719266 -28609081 + MLT1E2 LTR MaLR 310 626 0 2811 124 27 0 chr4 173719992 173720434 -28607913 - MER75 DNA T2_type 0 514 61 1873 151 65 20 chr4 173720788 173721140 -28607207 - THE1C LTR MaLR -7 368 1 224 234 16 0 chr4 173721748 173721812 -28606535 + A-rich Low_complexity Low_complexity 2 66 0 2017 123 0 66 chr4 173721921 173722253 -28606094 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr4 173722587 173722609 -28605738 + AT_rich Low_complexity Low_complexity 1 22 0 383 275 115 34 chr4 173722759 173723042 -28605305 + L1MD1 LINE L1 5327 5641 -543 1525 288 64 2 chr4 173723048 173723486 -28604861 - L2 LINE L2 -720 2594 2130 505 196 9 0 chr4 173723610 173723722 -28604625 + L1MC3 LINE L1 6985 7097 -688 306 289 0 0 chr4 173723722 173723812 -28604535 + MLT1F1 LTR MaLR 35 124 -443 872 77 0 8 chr4 173723821 173723938 -28604409 + L1MC3 LINE L1 7209 7324 -461 * 1768 210 51 2 chr4 173723936 173724331 -28604016 + L1MD1 LINE L1 5829 6242 0 2177 92 3 3 chr4 173724335 173724655 -28603692 + AluY SINE Alu 1 320 0 1367 170 38 0 chr4 173726253 173726518 -28601829 - Tigger1 DNA MER2_type -1337 1081 807 8969 143 10 3 chr4 173726844 173728298 -28600049 - L1PA13 LINE L1 -1158 4988 3524 6010 105 11 1 chr4 173728298 173728556 -28599791 + L1PA13 LINE L1 4979 5233 -930 2277 190 26 75 chr4 173728556 173729139 -28599208 - MLT2B3 LTR ERVL 0 554 1 6010 105 11 1 chr4 173729139 173730045 -28598302 + L1PA13 LINE L1 5233 6149 -14 447 202 0 28 chr4 173730055 173730164 -28598183 - L1 LINE L1 -3124 3022 2917 * 3837 164 19 2 chr4 173730162 173731234 -28597113 + L1PA16 LINE L1 4543 5636 -530 2805 179 75 45 chr4 173731234 173731905 -28596442 + pTR5 LTR ERV1 744 1434 -1004 3939 73 10 27 chr4 173732137 173732875 -28595472 + pTR5 LTR ERV1 1152 2025 -413 362 230 19 46 chr4 173732875 173732983 -28595364 + LTR30 LTR ERV1 544 721 -73 2318 88 0 6 chr4 173732983 173733302 -28595045 + pTR5 LTR ERV1 76 392 -2046 2497 190 72 2 chr4 173733302 173733802 -28594545 + L1PA16 LINE L1 5632 6166 0 422 298 23 0 chr4 173734055 173734186 -28594161 - MER94 DNA DNA 0 134 1 1994 142 76 0 chr4 173734356 173734686 -28593661 + THE1A LTR MaLR 1 355 0 34 79 0 0 chr4 173734944 173735020 -28593327 + AT_rich Low_complexity Low_complexity 1 76 0 1465 190 90 0 chr4 173735857 173736136 -28592211 + AluJb SINE Alu 6 309 -3 189 0 0 0 chr4 173736253 173736274 -28592073 + (A)n Simple_repeat Simple_repeat 1 21 0 3194 86 20 2 chr4 173736744 173737214 -28591133 + L1PA7 LINE L1 5693 6170 0 1606 100 9 9 chr4 173737358 173737587 -28590760 - AluSc SINE Alu -15 294 66 1042 175 18 58 chr4 173737703 173737926 -28590421 + MER89 LTR ERV1 344 557 -2 352 285 95 18 chr4 173737993 173738277 -28590070 + L1ME4a LINE L1 5603 5908 -213 45 79 0 0 chr4 173738391 173738492 -28589855 + AT_rich Low_complexity Low_complexity 1 101 0 423 0 0 0 chr4 173739685 173739732 -28588615 + (CAA)n Simple_repeat Simple_repeat 2 48 0 300 256 100 97 chr4 173739770 173739867 -28588480 + L1ME LINE L1 642 737 -5333 10432 87 6 3 chr4 173739867 173742092 -28586255 + L1PA7 LINE L1 3909 6147 -7 300 256 100 97 chr4 173742092 173742283 -28586064 + L1ME LINE L1 737 931 -5139 1044 24 0 0 chr4 173742363 173742490 -28585857 + L1PA4 LINE L1 6029 6155 0 278 270 47 34 chr4 173742536 173742684 -28585663 - L1MC/D LINE L1 -2336 5472 5323 684 279 100 61 chr4 173743468 173743953 -28584394 + MLT1H LTR MaLR 1 537 -10 258 156 0 0 chr4 173744206 173744251 -28584096 + (TG)n Simple_repeat Simple_repeat 2 46 0 2610 45 0 0 chr4 173744484 173744795 -28583552 + AluY SINE Alu 1 311 0 236 128 0 21 chr4 173745263 173745310 -28583037 + (CA)n Simple_repeat Simple_repeat 1 46 0 25 0 0 0 chr4 173748509 173748534 -28579813 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr4 173748822 173748846 -28579501 + AT_rich Low_complexity Low_complexity 1 24 0 282 254 0 0 chr4 173750531 173750590 -28577757 + L2 LINE L2 3252 3310 -3 21 0 0 0 chr4 173751891 173751912 -28576435 + AT_rich Low_complexity Low_complexity 1 21 0 1559 209 0 10 chr4 173752019 173752330 -28576017 + AluJb SINE Alu 1 308 -4 959 132 15 63 chr4 173752938 173753143 -28575204 + L1MA10 LINE L1 6104 6298 -36 31 82 0 0 chr4 173753491 173753564 -28574783 + AT_rich Low_complexity Low_complexity 1 73 0 24 0 0 0 chr4 173753765 173753789 -28574558 + AT_rich Low_complexity Low_complexity 1 24 0 287 291 128 0 chr4 173753809 173753950 -28574397 + L1ME LINE L1 5512 5670 -451 21 36 0 0 chr4 173754133 173754161 -28574186 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 173754757 173754780 -28573567 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr4 173754974 173754998 -28573349 + (TA)n Simple_repeat Simple_repeat 1 24 0 375 73 0 0 chr4 173755426 173755481 -28572866 + (TG)n Simple_repeat Simple_repeat 2 56 0 1034 284 58 22 chr4 173755487 173755944 -28572403 + HERVL LTR ERVL 4019 4492 -996 389 366 50 7 chr4 173756354 173756633 -28571714 + HERVL LTR ERVL 5044 5334 -430 499 278 60 68 chr4 173758716 173758950 -28569397 + MIR SINE MIR 8 239 -23 309 26 0 0 chr4 173758963 173759001 -28569346 + (CA)n Simple_repeat Simple_repeat 2 39 0 3523 129 18 4 chr4 173759247 173759864 -28568483 + L1PA16 LINE L1 5258 5879 -287 275 323 124 61 chr4 173761112 173761474 -28566873 - L3b LINE CR1 -95 1488 1104 576 115 0 0 chr4 173761679 173761775 -28566572 + L1PA13 LINE L1 6068 6163 0 333 0 0 0 chr4 173761974 173762011 -28566336 + (CA)n Simple_repeat Simple_repeat 2 38 0 27 49 0 0 chr4 173764750 173764791 -28563556 + AT_rich Low_complexity Low_complexity 1 41 0 200 234 0 16 chr4 173765291 173765355 -28562992 + GA-rich Low_complexity Low_complexity 4 66 0 21 0 0 0 chr4 173765750 173765771 -28562576 + AT_rich Low_complexity Low_complexity 1 21 0 203 300 0 0 chr4 173766007 173766077 -28562270 + (CAAT)n Simple_repeat Simple_repeat 3 72 0 202 234 0 0 chr4 173766080 173766127 -28562220 + (TA)n Simple_repeat Simple_repeat 1 47 0 22 0 0 0 chr4 173766148 173766170 -28562177 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr4 173766444 173766468 -28561879 + (TTATA)n Simple_repeat Simple_repeat 4 27 0 503 197 21 129 chr4 173768196 173768389 -28559958 - MER58C DNA MER1_type 0 215 44 644 220 137 11 chr4 173768419 173768601 -28559746 - MER3 DNA MER1_type -4 205 1 2038 128 0 0 chr4 173768839 173769154 -28559193 + AluSx SINE Alu 1 315 0 185 217 43 22 chr4 173769286 173769332 -28559015 - MER5A DNA MER1_type -89 100 54 2028 135 3 0 chr4 173769481 173769778 -28558569 + AluSx SINE Alu 1 298 -14 29 60 0 0 chr4 173770269 173770319 -28558028 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr4 173770853 173770875 -28557472 + AT_rich Low_complexity Low_complexity 1 22 0 835 323 94 45 chr4 173770923 173771970 -28556377 + L1MC/D LINE L1 2669 3766 -2380 14605 158 29 22 chr4 173771971 173773152 -28555195 + L1MA1 LINE L1 2259 3430 -2872 2600 105 5 0 chr4 173773152 173773525 -28554822 - THE1C LTR MaLR 0 375 1 14605 158 29 22 chr4 173773525 173774079 -28554268 + L1MA1 LINE L1 3430 3979 -2323 3350 149 63 15 chr4 173774079 173774663 -28553684 + LTR9 LTR ERV1 1 612 0 14605 158 29 22 chr4 173774663 173776940 -28551407 + L1MA1 LINE L1 3979 6302 0 21 0 0 0 chr4 173776940 173776961 -28551386 + AT_rich Low_complexity Low_complexity 1 21 0 258 284 46 41 chr4 173776962 173777159 -28551188 + L1MC/D LINE L1 3759 3956 -2190 2245 138 12 0 chr4 173777513 173777846 -28550501 + MER1B DNA MER1_type 1 337 0 1313 227 26 0 chr4 173777996 173778269 -28550078 + L1PA16 LINE L1 5884 6163 -3 1179 230 83 36 chr4 173779003 173779390 -28548957 + Charlie4a DNA MER1_type 83 487 -21 1549 272 56 17 chr4 173779390 173779854 -28548493 + MLT2F LTR ERVL 1 482 -181 42666 34 21 1 chr4 173782439 173788469 -28539878 + L1PA2 LINE L1 1 6154 -1 550 245 0 43 chr4 173789048 173789187 -28539160 - AluSg/x SINE Alu -12 297 165 684 194 42 7 chr4 173789300 173789444 -28538903 + MER1B DNA MER1_type 191 339 0 1822 203 3 22 chr4 173789574 173789938 -28538409 + MLT1A1 LTR MaLR 1 357 -8 2817 190 20 41 chr4 173789945 173790239 -28538108 + MLT1A1-int LTR MaLR 2 279 -1456 1881 129 11 0 chr4 173790239 173790511 -28537836 + AluSx SINE Alu 7 281 -31 532 0 0 0 chr4 173790511 173790570 -28537777 + (CAAAA)n Simple_repeat Simple_repeat 1 70 0 2817 190 20 41 chr4 173790570 173790880 -28537467 + MLT1A1-int LTR MaLR 279 594 -1141 333 327 180 24 chr4 173790881 173791254 -28537093 + L1MC/D LINE L1 4079 4509 -1637 397 334 152 15 chr4 173791301 173791768 -28536579 + L1MC/D LINE L1 4599 5129 -1017 683 231 42 59 chr4 173791886 173792172 -28536175 + L1MC/D LINE L1 5264 5544 -2264 233 207 158 37 chr4 173792176 173792258 -28536089 + L1MC/D LINE L1 5591 5682 -2126 1245 124 64 9 chr4 173793227 173793445 -28534902 + L1PA11 LINE L1 5945 6174 0 200 279 126 19 chr4 173794109 173794249 -28534098 - MIR SINE MIR -70 192 41 974 281 97 34 chr4 173795843 173796289 -28532058 - L1MC5 LINE L1 -547 7495 7057 203 32 65 0 chr4 173796289 173796320 -28532027 + (TATG)n Simple_repeat Simple_repeat 2 34 0 974 281 97 34 chr4 173796320 173796575 -28531772 - L1MC5 LINE L1 -985 7057 6820 2049 133 40 43 chr4 173798825 173799201 -28529146 - THE1C LTR MaLR 0 375 1 198 333 37 37 chr4 173799272 173799380 -28528967 + MER5A DNA MER1_type 10 117 -72 1788 261 67 38 chr4 173799619 173800228 -28528119 + L1M3c LINE L1 1 627 -5514 1848 184 16 63 chr4 173800528 173800958 -28527389 + MLT2D LTR ERVL 5 414 0 229 229 21 0 chr4 173802123 173802171 -28526176 + GA-rich Low_complexity Low_complexity 3 51 0 475 181 12 72 chr4 173804870 173805036 -28523311 + LTR37B LTR ERV1 205 360 -108 408 216 0 0 chr4 173805091 173805193 -28523154 + (TA)n Simple_repeat Simple_repeat 1 102 0 7188 152 41 45 chr4 173805303 173805781 -28522566 + Tigger1 DNA MER2_type 1001 1480 -938 2173 89 4 0 chr4 173805781 173806084 -28522263 + AluSx SINE Alu 1 304 0 7188 152 41 45 chr4 173806084 173806913 -28521434 + Tigger1 DNA MER2_type 1480 2306 -112 1864 19 0 0 chr4 173806913 173807126 -28521221 - L1PA3 LINE L1 -3 6152 5940 7188 152 41 45 chr4 173807126 173807237 -28521110 + Tigger1 DNA MER2_type 2306 2416 -2 283 394 21 7 chr4 173807516 173807658 -28520689 + L3 LINE CR1 458 601 -976 509 336 81 8 chr4 173807814 173808061 -28520286 - L3 LINE CR1 -160 1417 1153 495 358 123 21 chr4 173808874 173809296 -28519051 - L3 LINE CR1 -160 1417 953 299 315 0 0 chr4 173809643 173809732 -28518615 - MIR SINE MIR -121 141 53 277 340 83 24 chr4 173810489 173810827 -28517520 + Charlie4 DNA MER1_type 423 780 -1181 972 250 23 42 chr4 173810984 173811244 -28517103 - MER45C DNA AcHobo -698 255 1 434 237 7 52 chr4 173811470 173811605 -28516742 - MER45 DNA AcHobo -824 129 1 449 355 58 24 chr4 173811689 173812067 -28516280 - LTR16C LTR ERVL -18 473 83 1948 165 0 0 chr4 173812787 173813084 -28515263 - AluSx SINE Alu -13 299 3 405 364 26 5 chr4 173813282 173813303 -28515044 + L3 LINE CR1 1364 1383 -194 7794 17 6 0 chr4 173813303 173814396 -28513951 - L1PA3 LINE L1 0 6155 5064 405 364 26 5 chr4 173814396 173814569 -28513778 + L3 LINE CR1 1383 1562 -15 242 250 59 0 chr4 173814900 173814968 -28513379 - MER116 DNA Mariner -3 77 6 631 249 171 62 chr4 173815499 173815713 -28512634 - LTR40a LTR ERVL -116 403 214 2045 104 7 30 chr4 173815713 173816012 -28512335 - AluSx SINE Alu -20 292 1 631 249 171 62 chr4 173816012 173816154 -28512193 - LTR40a LTR ERVL -305 214 8 352 340 33 51 chr4 173816498 173816713 -28511634 + MIR SINE MIR 1 211 -51 201 129 0 0 chr4 173816822 173816853 -28511494 + (CA)n Simple_repeat Simple_repeat 2 32 0 1485 73 23 14 chr4 173817285 173817537 -28510810 - AluSp SINE Alu 0 317 64 235 182 57 0 chr4 173818940 173819028 -28509319 + (TATAA)n Simple_repeat Simple_repeat 1 93 0 28 48 0 0 chr4 173819797 173819839 -28508508 + AT_rich Low_complexity Low_complexity 1 42 0 552 248 52 39 chr4 173820062 173820215 -28508132 - L2 LINE L2 0 3313 3159 5102 96 16 22 chr4 173820423 173821194 -28507153 + MER4E LTR ERV1 1 766 0 30 0 0 0 chr4 173821575 173821605 -28506742 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr4 173821819 173821857 -28506490 + AT_rich Low_complexity Low_complexity 1 38 0 268 333 38 23 chr4 173822362 173822494 -28505853 - MIR3 SINE MIR -6 202 69 4973 129 51 5 chr4 173822570 173823360 -28504987 - LTR1B LTR ERV1 0 826 1 1134 116 142 49 chr4 173823655 173823880 -28504467 + L1PB4 LINE L1 5894 6139 -17 337 317 37 37 chr4 173824131 173824292 -28504055 + MER5A DNA MER1_type 1 161 -28 1890 138 7 30 chr4 173824494 173824799 -28503548 - AluJb SINE Alu -11 301 4 30 45 0 0 chr4 173825217 173825261 -28503086 + AT_rich Low_complexity Low_complexity 1 44 0 1482 202 110 37 chr4 173825541 173825976 -28502371 - MLT1C LTR MaLR 0 467 1 2049 137 3 0 chr4 173826433 173826718 -28501629 + AluSx SINE Alu 1 286 -26 28 0 0 0 chr4 173826718 173826746 -28501601 + AT_rich Low_complexity Low_complexity 1 28 0 422 155 0 12 chr4 173827082 173827166 -28501181 + (CA)n Simple_repeat Simple_repeat 1 83 0 2895 149 23 2 chr4 173827186 173827670 -28500677 + LOR1a LTR ERV1 1 494 -3 273 119 0 0 chr4 173827670 173827712 -28500635 + (CATA)n Simple_repeat Simple_repeat 4 45 0 348 299 15 22 chr4 173827775 173827912 -28500435 - MER117 DNA MER1_type -59 138 3 42377 38 22 1 chr4 173828735 173834761 -28493586 + L1PA3 LINE L1 1 6152 -3 255 31 0 0 chr4 173835071 173835103 -28493244 + (CA)n Simple_repeat Simple_repeat 2 33 0 21 57 0 0 chr4 173835551 173835586 -28492761 + AT_rich Low_complexity Low_complexity 1 35 0 1957 196 70 5 chr4 173835836 173836233 -28492114 + MSTB LTR MaLR 4 426 0 1278 234 111 18 chr4 173837694 173838152 -28490195 + MLT1D LTR MaLR 5 505 0 1891 176 20 0 chr4 173838526 173838867 -28489480 - MER7A DNA MER2_type 0 346 1 2642 145 14 2 chr4 173839410 173839831 -28488516 + MSTA LTR MaLR 1 426 -2 180 0 0 0 chr4 173839890 173839910 -28488437 + (CAT)n Simple_repeat Simple_repeat 2 21 0 270 0 0 0 chr4 173839910 173839940 -28488407 + (CAG)n Simple_repeat Simple_repeat 1 30 0 528 271 137 38 chr4 173840258 173840744 -28487603 + L1MEd LINE L1 666 1197 -5008 365 315 113 1 chr4 173840747 173840997 -28487350 - LTR33 LTR ERVL -168 353 46 562 307 45 28 chr4 173841020 173841578 -28486769 + L1MEd LINE L1 1200 1806 -4590 317 317 49 43 chr4 173841780 173841944 -28486403 + L1MEd LINE L1 2037 2201 -4195 2165 252 56 20 chr4 173841948 173842810 -28485537 + L1MEd LINE L1 2536 3428 -2787 1036 227 35 113 chr4 173843551 173843957 -28484390 + MLT1A2 LTR MaLR 1 374 0 2478 193 29 0 chr4 173844792 173845310 -28483037 + L1MEd LINE L1 3988 4520 -1695 40 21 0 0 chr4 173845314 173845361 -28482986 + AT_rich Low_complexity Low_complexity 1 47 0 265 264 153 0 chr4 173845477 173845549 -28482798 + MIR SINE MIR 174 256 -6 3865 207 53 12 chr4 173845617 173847031 -28481316 + L1MA9 LINE L1 4533 6002 -379 273 75 0 0 chr4 173847031 173847071 -28481276 + (CA)n Simple_repeat Simple_repeat 2 41 0 906 202 40 0 chr4 173847076 173847249 -28481098 - Tigger2 DNA MER2_type 0 2718 2539 756 269 72 16 chr4 173847249 173847569 -28480778 + L1MA9 LINE L1 6006 6343 -38 265 264 153 0 chr4 173848869 173848941 -28479406 + MIR SINE MIR 174 256 -6 186 234 47 109 chr4 173850505 173850569 -28477778 + L2 LINE L2 3204 3263 -50 2367 50 0 17 chr4 173851063 173851365 -28476982 + AluY SINE Alu 1 297 -14 2405 163 22 5 chr4 173851847 173852264 -28476083 + MSTB LTR MaLR 3 426 0 318 335 125 0 chr4 173853421 173853573 -28474774 + MIR SINE MIR 58 228 -34 360 0 0 0 chr4 173854155 173854195 -28474152 + (TC)n Simple_repeat Simple_repeat 2 41 0 270 0 0 0 chr4 173854194 173854224 -28474123 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 259 296 82 10 chr4 173854339 173854437 -28473910 + L2 LINE L2 3190 3294 -19 264 378 60 8 chr4 173854517 173854642 -28473705 - MIR SINE MIR -64 144 9 243 0 0 0 chr4 173855020 173855047 -28473300 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr4 173856510 173856531 -28471816 + AT_rich Low_complexity Low_complexity 1 21 0 506 340 30 51 chr4 173858051 173858383 -28469964 + L2 LINE L2 2556 2880 -434 23 68 0 0 chr4 173859513 173859557 -28468790 + AT_rich Low_complexity Low_complexity 1 44 0 273 29 0 0 chr4 173859721 173859755 -28468592 + (TTCC)n Simple_repeat Simple_repeat 2 35 0 26 50 0 0 chr4 173859878 173859918 -28468429 + AT_rich Low_complexity Low_complexity 1 40 0 192 269 32 65 chr4 173859997 173860090 -28468257 - L3b LINE CR1 -208 1375 1286 221 306 47 0 chr4 173860127 173860212 -28468135 - MIR3 SINE MIR -9 199 111 364 358 67 0 chr4 173860598 173860852 -28467495 - L1M4 LINE L1 -891 5255 4985 640 194 0 8 chr4 173862092 173862226 -28466121 + L1MB3 LINE L1 6044 6176 -7 198 0 0 0 chr4 173863000 173863022 -28465325 + (CA)n Simple_repeat Simple_repeat 1 22 0 2162 105 3 0 chr4 173863118 173863404 -28464943 - AluSq SINE Alu -26 287 1 884 285 54 26 chr4 173864505 173864856 -28463491 + LTR40a LTR ERVL 122 482 -37 276 292 25 50 chr4 173870365 173870526 -28457821 + MER41B LTR ERV1 273 429 -206 256 360 53 9 chr4 173870838 173870952 -28457395 + L2 LINE L2 3195 3313 0 29 20 0 39 chr4 173871986 173872018 -28456329 + AT_rich Low_complexity Low_complexity 1 32 -17 2050 78 0 75 chr4 173872018 173872339 -28456008 - L1PA7 LINE L1 -14 6140 5844 29 20 0 39 chr4 173872339 173872357 -28455990 + AT_rich Low_complexity Low_complexity 32 49 0 213 330 59 17 chr4 173872753 173872871 -28455476 + MIR SINE MIR 23 145 -117 22 0 0 0 chr4 173873678 173873700 -28454647 + AT_rich Low_complexity Low_complexity 1 22 0 228 287 0 15 chr4 173874176 173874378 -28453969 + CT-rich Low_complexity Low_complexity 1 198 0 1750 133 26 4 chr4 173876573 173876844 -28451503 + AluSx SINE Alu 3 279 -33 450 0 0 0 chr4 173876844 173876894 -28451453 + (CA)n Simple_repeat Simple_repeat 1 50 0 285 0 67 0 chr4 173876894 173876939 -28451408 + (GA)n Simple_repeat Simple_repeat 1 48 0 458 319 148 59 chr4 173877868 173878420 -28449927 - L2 LINE L2 -54 3259 2758 279 0 0 0 chr4 173878420 173878451 -28449896 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 2153 79 0 7 chr4 173878452 173878731 -28449616 - AluSc SINE Alu -32 277 1 458 319 148 59 chr4 173878731 173879024 -28449323 - L2 LINE L2 -554 2759 2332 590 355 42 59 chr4 173879177 173879633 -28448714 - L2 LINE L2 -8 3264 2817 446 316 62 11 chr4 173879728 173879905 -28448442 - MIR SINE MIR -75 187 2 252 86 0 0 chr4 173880191 173880226 -28448121 + (GA)n Simple_repeat Simple_repeat 2 36 0 211 275 0 14 chr4 173880474 173880543 -28447804 + GA-rich Low_complexity Low_complexity 2 69 0 1289 209 26 85 chr4 173880543 173880931 -28447416 - MLT2D LTR ERVL -48 366 2 281 350 124 9 chr4 173882464 173882681 -28445666 - MIR SINE MIR -13 249 8 21 0 0 0 chr4 173883345 173883366 -28444981 + AT_rich Low_complexity Low_complexity 1 21 0 2149 117 0 0 chr4 173883366 173883664 -28444683 + AluSq SINE Alu 1 298 -15 22 0 0 0 chr4 173884040 173884062 -28444285 + AT_rich Low_complexity Low_complexity 1 22 0 25 90 0 0 chr4 173884113 173884180 -28444167 + AT_rich Low_complexity Low_complexity 1 67 0 257 200 38 50 chr4 173884209 173884289 -28444058 - MIR SINE MIR 0 262 184 286 253 96 0 chr4 173884551 173884634 -28443713 - L2 LINE L2 0 3313 3223 361 300 20 27 chr4 173884812 173884962 -28443385 - L1PA13 LINE L1 -5529 1258 1110 1719 72 0 4 chr4 173884964 173885199 -28443148 + L1PA13 LINE L1 5928 6161 -2 288 327 141 15 chr4 173885271 173885534 -28442813 - L2 LINE L2 -339 2975 2680 1071 189 28 23 chr4 173885939 173886156 -28442191 + AluJb SINE Alu 65 282 -30 237 128 0 0 chr4 173886156 173886203 -28442144 + (TC)n Simple_repeat Simple_repeat 2 48 0 222 98 59 0 chr4 173886202 173886253 -28442094 + (TA)n Simple_repeat Simple_repeat 1 54 0 * 476 272 234 47 chr4 173886382 173886720 -28441627 - MLT1J2 LTR MaLR -44 406 6 21 57 0 0 chr4 173886844 173886879 -28441468 + AT_rich Low_complexity Low_complexity 1 35 0 827 371 41 28 chr4 173887331 173887862 -28440485 - L2 LINE L2 -615 2699 2162 2827 166 27 29 chr4 173887925 173888521 -28439826 + L1MA7 LINE L1 5656 6250 -41 328 180 0 50 chr4 173888524 173888624 -28439723 + (TA)n Simple_repeat Simple_repeat 2 96 0 357 284 92 0 chr4 173888782 173888891 -28439456 - L2 LINE L2 0 3313 3195 489 362 80 0 chr4 173888898 173889210 -28439137 - L2 LINE L2 -1397 1917 1581 216 216 0 0 chr4 173889306 173889357 -28438990 + GA-rich Low_complexity Low_complexity 1 51 0 556 324 46 25 chr4 173889400 173889638 -28438709 - MIR SINE MIR -7 255 13 349 197 13 66 chr4 173889828 173889904 -28438443 + MER2 DNA MER2_type 8 79 -266 315 333 50 19 chr4 173889983 173890142 -28438205 - MIR SINE MIR -70 192 29 2194 81 0 7 chr4 173890415 173890746 -28437601 - AluY SINE Alu 0 329 1 21 0 0 0 chr4 173890845 173890866 -28437481 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr4 173890991 173891037 -28437310 + AT_rich Low_complexity Low_complexity 1 46 0 966 144 5 41 chr4 173891101 173891296 -28437051 + L1MA3 LINE L1 6113 6300 -5 339 240 93 0 chr4 173891491 173891566 -28436781 + MLT1E2 LTR MaLR 523 604 -22 25 31 0 0 chr4 173891952 173891984 -28436363 + AT_rich Low_complexity Low_complexity 1 32 0 3698 133 82 29 chr4 173892113 173892829 -28435518 - LTR1 LTR ERV1 0 785 32 705 187 89 19 chr4 173893027 173893241 -28435106 + MER69 DNA AcHobo 2060 2288 -238 198 0 0 0 chr4 173894662 173894684 -28433663 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 23 0 0 0 chr4 173895422 173895445 -28432902 + AT_rich Low_complexity Low_complexity 1 23 0 3108 39 8 0 chr4 173895733 173896116 -28432231 + L1PA4 LINE L1 5770 6155 0 24 0 0 0 chr4 173896469 173896493 -28431854 + AT_rich Low_complexity Low_complexity 1 24 0 3392 224 28 39 chr4 173897187 173898237 -28430110 + L1 LINE L1 2596 3633 -2513 585 179 8 16 chr4 173898237 173898360 -28429987 - FRAM SINE Alu -8 168 47 1519 191 7 17 chr4 173899036 173899357 -28428990 - AluJb SINE Alu 0 318 1 1314 137 44 8 chr4 173899367 173899615 -28428732 - L1MA5A LINE L1 -3 6294 6038 1967 128 3 16 chr4 173900582 173900901 -28427446 + L1PB3 LINE L1 5839 6153 -1 431 194 31 31 chr4 173901157 173901255 -28427092 + MER82 DNA MER2_type 18 115 -538 740 296 82 31 chr4 173901795 173902271 -28426076 - L1M4 LINE L1 -1331 4815 4316 26 74 0 0 chr4 173902633 173902687 -28425660 + AT_rich Low_complexity Low_complexity 1 54 0 26 30 0 0 chr4 173902944 173902977 -28425370 + AT_rich Low_complexity Low_complexity 1 33 0 455 319 151 15 chr4 173903566 173904072 -28424275 - L1M4 LINE L1 -2758 3388 2789 785 246 29 74 chr4 173904346 173904772 -28423575 + MER57A LTR ERV1 22 403 0 1926 185 43 25 chr4 173905015 173905551 -28422796 + MLT2A2 LTR ERVL 1 554 0 223 308 58 42 chr4 173905872 173905992 -28422355 - L2 LINE L2 -16 3297 3176 2203 117 23 47 chr4 173907100 173907484 -28420863 + THE1C LTR MaLR 1 375 0 21 57 0 0 chr4 173907489 173907524 -28420823 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr4 173907566 173907605 -28420742 + AT_rich Low_complexity Low_complexity 1 39 0 297 207 121 71 chr4 173908375 173908515 -28419832 + MIR SINE MIR 90 236 -26 195 204 0 0 chr4 173908700 173908744 -28419603 + (CA)n Simple_repeat Simple_repeat 2 45 0 1404 89 38 55 chr4 173909460 173909697 -28418650 + L1PA13 LINE L1 5910 6142 -21 1797 212 70 22 chr4 173909715 173910173 -28418174 - MLT1D LTR MaLR -25 480 1 239 222 0 19 chr4 173911229 173911283 -28417064 + G-rich Low_complexity Low_complexity 4 56 0 282 29 0 0 chr4 173912636 173912671 -28415676 + (GA)n Simple_repeat Simple_repeat 2 36 0 520 257 0 9 chr4 173912892 173913005 -28415342 + L2 LINE L2 3197 3308 -5 425 386 63 23 chr4 173913016 173913556 -28414791 + L2 LINE L2 2710 3270 -2 1693 181 20 0 chr4 173913720 173914012 -28414335 + AluJb SINE Alu 1 298 -14 2087 91 10 7 chr4 173914354 173914651 -28413696 + AluY SINE Alu 1 298 -13 917 208 6 6 chr4 173914673 173914846 -28413501 - FAM SINE Alu -2 173 1 23 0 0 0 chr4 173914954 173914977 -28413370 + AT_rich Low_complexity Low_complexity 1 23 0 183 129 0 0 chr4 173915704 173915735 -28412612 + (TTTTTA)n Simple_repeat Simple_repeat 3 33 0 1722 159 52 0 chr4 173917509 173917799 -28410548 - AluSx SINE Alu -7 305 1 24 77 0 0 chr4 173917960 173918012 -28410335 + AT_rich Low_complexity Low_complexity 1 52 0 9901 73 92 12 chr4 173919111 173920567 -28407780 + L1P LINE L1 1 1573 -4573 402 265 107 77 chr4 173920754 173921126 -28407221 - L1 LINE L1 -1215 4511 1016 223 296 114 0 chr4 173921181 173921269 -28407078 - MIR SINE MIR -16 246 149 258 281 44 0 chr4 173921271 173921385 -28406962 + (CATA)n Simple_repeat Simple_repeat 3 121 0 333 345 8 8 chr4 173921450 173921569 -28406778 - MIR SINE MIR -95 167 49 427 283 154 34 chr4 173921711 173922004 -28406343 + LTR16A LTR ERVL 8 335 -115 397 243 157 25 chr4 173922242 173922477 -28405870 - L1M4 LINE L1 -2253 3893 3628 350 288 121 39 chr4 173922478 173923047 -28405300 - L1M4 LINE L1 -2542 3604 2958 390 256 0 0 chr4 173923936 173924116 -28404231 + G-rich Low_complexity Low_complexity 1 180 0 237 128 0 0 chr4 173924274 173924321 -28404026 + (GA)n Simple_repeat Simple_repeat 2 48 0 841 211 44 31 chr4 173924321 173924549 -28403798 - AluJb SINE Alu -30 282 52 303 334 142 15 chr4 173924942 173925273 -28403074 + L2 LINE L2 2680 3048 -265 1692 73 4 4 chr4 173925277 173925511 -28402836 - L1PA13 LINE L1 -2 6161 5928 362 301 37 29 chr4 173925524 173925660 -28402687 + L1PA13 LINE L1 1122 1258 -5529 217 224 20 0 chr4 173925871 173925920 -28402427 + L2 LINE L2 3264 3313 0 333 313 54 0 chr4 173926414 173926526 -28401821 + MER5B DNA MER1_type 1 118 -60 2109 131 0 10 chr4 173926861 173927209 -28401138 - AluSx SINE Alu 0 345 1 301 322 35 28 chr4 173928133 173928276 -28400071 + L2 LINE L2 3163 3306 -7 1443 145 4 4 chr4 173930646 173930895 -28397452 + L1PA13 LINE L1 5915 6163 0 215 125 42 21 chr4 173930951 173930999 -28397348 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 294 73 0 0 chr4 173931184 173931225 -28397122 + (TG)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr4 173931905 173931926 -28396421 + AT_rich Low_complexity Low_complexity 1 21 0 329 96 0 0 chr4 173931927 173931979 -28396368 - L1MA2 LINE L1 -10 6294 6243 2336 83 0 7 chr4 173931987 173932289 -28396058 - AluSc SINE Alu -3 306 7 5612 134 24 8 chr4 173932289 173933233 -28395114 - Tigger1 DNA MER2_type -327 2091 1133 204 182 0 0 chr4 173933383 173933427 -28394920 + A-rich Low_complexity Low_complexity 1 44 0 22939 28 4 3 chr4 173933544 173936337 -28392010 + L1P LINE L1 2507 5302 -844 436 328 55 12 chr4 173936950 173937206 -28391141 - L2 LINE L2 -1936 1378 1112 301 293 94 22 chr4 173937516 173937697 -28390650 + MLT1K LTR MaLR 391 584 -4 17957 49 66 3 chr4 173939571 173941948 -28386399 - L1P LINE L1 -3619 2527 1 201 210 0 0 chr4 173942390 173942452 -28385895 + T-rich Low_complexity Low_complexity 1 62 0 516 253 44 44 chr4 173942555 173942780 -28385567 - L1MD2 LINE L1 -10 6349 6125 440 131 24 24 chr4 173942789 173942873 -28385474 + AluSp SINE Alu 1 84 -228 2684 94 30 15 chr4 173942874 173943268 -28385079 + MLT2A1 LTR ERVL 1 400 -44 244 228 11 33 chr4 173943322 173943414 -28384933 + (TA)n Simple_repeat Simple_repeat 1 90 0 336 107 0 18 chr4 173943505 173943561 -28384786 + MLT2A1 LTR ERVL 399 453 0 655 144 19 0 chr4 173943561 173943665 -28384682 + AluSp SINE Alu 81 186 -127 375 93 37 0 chr4 173943665 173943719 -28384628 + Alu SINE Alu 233 288 -12 1671 240 93 5 chr4 173943719 173944161 -28384186 - L1MD2 LINE L1 -240 6119 5639 606 14 0 0 chr4 173944273 173944343 -28384004 - L1PA4 LINE L1 -18 6137 6068 1704 191 5 16 chr4 173944361 173944760 -28383587 - L1M2 LINE L1 -698 5614 5220 * 2961 179 78 68 chr4 173944755 173944966 -28383381 - L1M2 LINE L1 -1686 4460 4253 1425 216 48 20 chr4 173944966 173945317 -28383030 + MLT1A1 LTR MaLR 1 361 -4 2961 179 78 68 chr4 173945317 173945930 -28382417 - L1M2 LINE L1 -1893 4253 3628 768 182 8 0 chr4 173945932 173946064 -28382283 + AluJb SINE Alu 1 133 -179 1740 147 32 0 chr4 173946067 173946352 -28381995 + AluSq SINE Alu 1 294 -19 1947 221 90 22 chr4 173947311 173947845 -28380502 - L1MD3 LINE L1 -9 7986 7417 226 235 0 20 chr4 173947861 173947912 -28380435 - MLT1F1 LTR MaLR -443 124 75 480 288 133 21 chr4 173947983 173948216 -28380131 - MIR SINE MIR 0 262 4 2038 122 11 0 chr4 173948470 173948757 -28379590 + AluSx SINE Alu 1 290 -22 373 257 23 34 chr4 173949144 173949319 -28379028 + MLT1C LTR MaLR 292 464 -3 273 333 30 0 chr4 173949319 173949418 -28378929 - MIR SINE MIR -79 183 82 * 369 342 80 33 chr4 173949416 173949769 -28378578 + L2 LINE L2 2648 3059 -254 1260 177 158 23 chr4 173949887 173950153 -28378194 + AluJb SINE Alu 1 302 0 194 184 0 0 chr4 173951152 173951190 -28377157 + (TG)n Simple_repeat Simple_repeat 1 38 0 204 125 0 0 chr4 173951357 173951389 -28376958 + (CATATA)n Simple_repeat Simple_repeat 4 35 0 882 213 0 29 chr4 173951411 173951585 -28376762 - FAM SINE Alu -3 172 4 5524 122 28 0 chr4 173951656 173952519 -28375828 + L1PA14 LINE L1 5275 6161 0 27 29 0 0 chr4 173952819 173952853 -28375494 + AT_rich Low_complexity Low_complexity 1 34 0 184 281 73 42 chr4 173952895 173952991 -28375356 + L2 LINE L2 3215 3313 0 569 335 88 46 chr4 173953064 173953603 -28374744 + L2 LINE L2 2716 3271 -1 920 324 51 37 chr4 173954738 173955148 -28373199 + MLT1E LTR MaLR 30 445 -148 676 308 78 43 chr4 173955173 173955546 -28372801 + L1MEd LINE L1 274 659 -5460 451 330 51 64 chr4 173956583 173957010 -28371337 - L1MEc LINE L1 -811 1765 1289 21 89 0 0 chr4 173957136 173957192 -28371155 + AT_rich Low_complexity Low_complexity 1 56 0 285 29 0 0 chr4 173957580 173957614 -28370733 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 33 43 0 0 chr4 173957978 173958025 -28370322 + AT_rich Low_complexity Low_complexity 1 47 0 185 278 56 0 chr4 173959839 173959893 -28368454 + L2 LINE L2 2331 2387 -927 182 254 197 0 chr4 173959879 173959950 -28368397 + MIR SINE MIR 62 146 -62 * 391 281 52 0 chr4 173961348 173961444 -28366903 + L2 LINE L2 3164 3264 -8 1104 287 107 16 chr4 173962256 173963185 -28365162 - L1ME3A LINE L1 -231 5939 4923 1698 232 39 30 chr4 173963185 173963676 -28364671 - MLT1D LTR MaLR -10 495 1 240 318 0 0 chr4 173965030 173965093 -28363254 + L2 LINE L2 3249 3311 -2 252 366 92 7 chr4 173966197 173966350 -28361997 - MLT1L LTR MaLR -138 477 312 359 282 112 35 chr4 173966389 173966559 -28361788 - MLT1L LTR MaLR -389 226 44 2239 129 25 6 chr4 173966998 173967355 -28360992 - THE1B LTR MaLR 0 364 1 425 149 40 0 chr4 173968227 173968301 -28360046 - MER30 DNA MER1_type 0 230 154 310 200 32 39 chr4 173968460 173968615 -28359732 + (CACAC)n Simple_repeat Simple_repeat 5 158 0 718 293 65 16 chr4 173968747 173968993 -28359354 + MIR SINE MIR 5 262 0 263 349 0 0 chr4 173968991 173969057 -28359290 - MIR SINE MIR -109 99 34 * 1592 165 152 19 chr4 173969517 173969893 -28358454 + MSTA LTR MaLR 1 426 -2 1920 113 23 10 chr4 173971522 173971822 -28356525 - L1MA1 LINE L1 -5 6297 5994 600 75 0 0 chr4 173971822 173971902 -28356445 + L1M1 LINE L1 5594 5673 -629 22 0 0 0 chr4 173972375 173972397 -28355950 + AT_rich Low_complexity Low_complexity 1 22 0 230 362 10 15 chr4 173972511 173972707 -28355640 - HAL1b LINE L1 -751 597 403 3983 102 10 8 chr4 173973564 173974183 -28354164 - L1PA5 LINE L1 0 6154 5535 1749 296 111 21 chr4 173974453 173975155 -28353192 + L1M4c LINE L1 220 984 -5329 307 224 61 112 chr4 173975347 173975543 -28352804 + L1M4c LINE L1 2044 2229 -4155 313 254 62 94 chr4 173976440 173976664 -28351683 - L2 LINE L2 0 3313 3097 2072 159 12 0 chr4 173977125 173977465 -28350882 + MER2 DNA MER2_type 1 344 0 896 302 4 8 chr4 173978295 173978543 -28349804 - MIR SINE MIR -1 261 15 183 42 0 0 chr4 173979257 173979281 -28349066 + (TG)n Simple_repeat Simple_repeat 2 25 0 256 363 47 6 chr4 173981077 173981257 -28347090 - MIR SINE MIR -49 213 26 198 339 0 0 chr4 173981792 173981851 -28346496 - L2 LINE L2 -84 3229 3171 24 85 0 0 chr4 173981888 173981947 -28346400 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr4 173982084 173982105 -28346242 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 173983031 173983052 -28345295 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 173983173 173983194 -28345153 + AT_rich Low_complexity Low_complexity 1 21 0 573 345 92 15 chr4 173983573 173984040 -28344307 - L1M4 LINE L1 -1928 4218 3716 27 62 0 0 chr4 173984187 173984235 -28344112 + AT_rich Low_complexity Low_complexity 1 48 0 425 278 181 44 chr4 173984365 173984934 -28343413 + L1M4c LINE L1 3194 3840 -2542 414 264 145 13 chr4 173984935 173985170 -28343177 + L1M4c LINE L1 3864 4129 -2253 399 283 154 34 chr4 173985406 173985699 -28342648 - LTR16A LTR ERVL -115 335 8 338 345 8 8 chr4 173985841 173985960 -28342387 + MIR SINE MIR 49 167 -95 258 281 44 0 chr4 173986025 173986139 -28342208 + (TATG)n Simple_repeat Simple_repeat 3 121 0 229 296 114 0 chr4 173986141 173986229 -28342118 + MIR SINE MIR 149 246 -16 335 303 64 29 chr4 173986270 173986613 -28341734 + L1M4c LINE L1 4481 4835 -1547 552 284 117 23 chr4 173986735 173986992 -28341355 - LTR33 LTR ERVL -160 361 81 1997 129 3 0 chr4 173987065 173987359 -28340988 + AluSx SINE Alu 1 295 -17 23 0 0 0 chr4 173987359 173987382 -28340965 + AT_rich Low_complexity Low_complexity 1 23 0 366 304 107 31 chr4 173987409 173988089 -28340258 + L1M4c LINE L1 4908 5639 -743 226 228 129 30 chr4 173988158 173988259 -28340088 + L1P5 LINE L1 5528 5638 -518 581 127 59 25 chr4 173988416 173988534 -28339813 + AluJb SINE Alu 179 300 -12 25 51 0 0 chr4 173988955 173988994 -28339353 + AT_rich Low_complexity Low_complexity 1 39 0 204 135 0 0 chr4 173989290 173989327 -28339020 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 415 313 122 33 chr4 173989513 173989727 -28338620 - MIR SINE MIR -19 243 11 2143 126 10 0 chr4 173989791 173990093 -28338254 - AluSx SINE Alu -7 305 1 24 53 0 0 chr4 173990725 173990763 -28337584 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr4 173991768 173991789 -28336558 + AT_rich Low_complexity Low_complexity 1 21 0 488 339 34 98 chr4 173992254 173992611 -28335736 + L2 LINE L2 2930 3263 -9 255 388 62 9 chr4 173992862 173993089 -28335258 - LTR16C LTR ERVL -2 489 251 2460 44 3 3 chr4 173993852 173994149 -28334198 - AluY SINE Alu -14 297 1 23 54 0 0 chr4 173994990 173995027 -28333320 + AT_rich Low_complexity Low_complexity 1 37 0 2947 151 11 0 chr4 173995520 173995989 -28332358 + HSMAR2 DNA Mariner 1 474 -828 275 250 110 0 chr4 173996857 173996957 -28331390 - LTR16B LTR ERVL -4 460 350 7668 126 18 16 chr4 173997264 173998467 -28329880 - HSMAR2 DNA Mariner -1 1301 96 239 222 0 19 chr4 174001503 174001557 -28326790 + C-rich Low_complexity Low_complexity 4 56 0 267 31 0 0 chr4 174002802 174002834 -28325513 + (CA)n Simple_repeat Simple_repeat 1 32 0 2309 97 0 3 chr4 174003923 174004223 -28324124 - AluSx SINE Alu -13 299 1 345 289 109 48 chr4 174004327 174004914 -28323433 + L1MEc LINE L1 940 1580 -4816 1358 160 149 0 chr4 174004914 174005176 -28323171 + AluSx SINE Alu 1 301 -11 345 289 109 48 chr4 174005176 174005302 -28323045 + L1MEc LINE L1 1580 1697 -4699 236 61 0 0 chr4 174005393 174005426 -28322921 + HSMAR1 DNA Mariner 1255 1287 0 24 0 0 0 chr4 174005842 174005866 -28322481 + AT_rich Low_complexity Low_complexity 1 24 0 185 274 20 0 chr4 174006784 174006835 -28321512 - L2 LINE L2 -1 3312 3261 727 192 68 143 chr4 174007101 174007335 -28321012 - MLT1A2 LTR MaLR -2 388 207 6434 84 40 0 chr4 174007335 174008288 -28320059 - L1PA10 LINE L1 -14 6154 5195 727 192 68 143 chr4 174008288 174008474 -28319873 - MLT1A2 LTR MaLR -183 207 9 221 261 0 0 chr4 174008478 174008524 -28319823 + (TATATG)n Simple_repeat Simple_repeat 5 50 0 449 287 43 48 chr4 174008966 174009154 -28319193 + MIR SINE MIR 74 260 -2 189 299 45 15 chr4 174010307 174010374 -28317973 + L3 LINE CR1 850 918 -659 188 358 109 10 chr4 174010690 174010891 -28317456 - L3 LINE CR1 -153 1424 1204 258 297 189 7 chr4 174010893 174011041 -28317306 + MIR SINE MIR 17 191 -71 261 57 0 0 chr4 174011395 174011430 -28316917 + (CA)n Simple_repeat Simple_repeat 1 35 0 490 292 0 35 chr4 174012070 174012214 -28316133 + L2 LINE L2 3134 3272 0 327 310 76 19 chr4 174012558 174012716 -28315631 + MIR SINE MIR 7 173 -89 563 136 9 0 chr4 174012773 174012883 -28315464 + CT-rich Low_complexity Low_complexity 4 114 0 717 273 53 9 chr4 174013176 174013403 -28314944 + HsTC2 DNA Tc2 6 242 -1656 1329 203 22 22 chr4 174013404 174013680 -28314667 + AluJo SINE Alu 1 276 -36 464 211 94 22 chr4 174013684 174013768 -28314579 + HsTC2 DNA Tc2 230 307 -1591 2094 143 0 0 chr4 174013768 174014062 -28314285 - AluSx SINE Alu -18 294 1 464 211 94 22 chr4 174014062 174014157 -28314190 + HsTC2 DNA Tc2 307 422 -1476 237 218 0 0 chr4 174014173 174014228 -28314119 + HsTC2 DNA Tc2 1841 1895 -3 1588 241 42 26 chr4 174014322 174014775 -28313572 - MLT1C LTR MaLR 0 467 8 291 164 0 0 chr4 174014861 174014922 -28313425 + (CA)n Simple_repeat Simple_repeat 2 62 0 22 106 0 0 chr4 174015244 174015329 -28313018 + AT_rich Low_complexity Low_complexity 1 85 0 1955 241 61 50 chr4 174015603 174016189 -28312158 + MLT1E LTR MaLR 1 593 0 19921 146 42 5 chr4 174016222 174019473 -28308874 + L1M1 LINE L1 1 3371 -4194 225 143 48 0 chr4 174019773 174019815 -28308532 + (TATG)n Simple_repeat Simple_repeat 1 44 0 399 256 240 0 chr4 174019925 174020071 -28308276 + MIR SINE MIR 42 221 -41 31 76 0 0 chr4 174021168 174021234 -28307113 + AT_rich Low_complexity Low_complexity 1 66 0 2196 105 3 10 chr4 174021457 174021763 -28306584 + AluSx SINE Alu 3 306 -6 882 296 86 15 chr4 174021768 174022106 -28306241 + L1MEc LINE L1 60 421 -5975 480 209 49 84 chr4 174022113 174022338 -28306009 - L1M3e LINE L1 -5544 1486 1270 10320 112 18 3 chr4 174022347 174023816 -28304531 - L1P3 LINE L1 -4971 1490 1 683 283 184 23 chr4 174024203 174024750 -28303597 - L2 LINE L2 0 3313 2671 389 100 0 17 chr4 174024914 174024974 -28303373 + L1PA10 LINE L1 6099 6157 -11 188 297 14 40 chr4 174026327 174026401 -28301946 + MIR SINE MIR 81 152 -110 24 0 0 0 chr4 174026493 174026517 -28301830 + AT_rich Low_complexity Low_complexity 1 24 0 266 358 45 22 chr4 174026743 174026877 -28301470 - L3 LINE CR1 -1 1576 1440 707 279 72 9 chr4 174027359 174027901 -28300446 - L1MEc LINE L1 -2524 3902 3327 22 70 0 0 chr4 174027915 174027958 -28300389 + AT_rich Low_complexity Low_complexity 1 43 0 438 290 87 32 chr4 174027982 174028327 -28300020 - L1MEc LINE L1 -3574 2852 2489 358 217 61 78 chr4 174028422 174028537 -28299810 - L1MEc LINE L1 -4181 2426 2314 356 295 165 11 chr4 174028895 174029264 -28299083 - L1MEc LINE L1 -861 1926 1264 253 119 0 0 chr4 174030301 174030343 -28298004 - L1M LINE L1 -2379 5429 5388 280 130 0 200 chr4 174032010 174032041 -28296306 - MADE1 DNA Mariner 0 80 44 624 37 25 0 chr4 174032041 174032122 -28296225 + L1PA7 LINE L1 6069 6151 -3 280 130 0 200 chr4 174032122 174032190 -28296157 - MADE1 DNA Mariner -35 45 1 261 305 51 42 chr4 174033574 174033692 -28294655 + MIR SINE MIR 32 150 -58 200 297 102 51 chr4 174033907 174034025 -28294322 + MIR SINE MIR 58 181 -81 13932 162 42 41 chr4 174034433 174038703 -28289644 + L1MA2 LINE L1 3446 7719 -4 5968 18 0 0 chr4 174038935 174039616 -28288731 + L1PA2 LINE L1 5468 6148 -7 24 0 0 0 chr4 174039616 174039640 -28288707 + AT_rich Low_complexity Low_complexity 1 24 0 287 274 131 48 chr4 174040904 174041156 -28287191 - HAL1 LINE L1 -9 2498 2226 31 0 0 0 chr4 174041636 174041667 -28286680 + AT_rich Low_complexity Low_complexity 1 31 0 972 94 77 0 chr4 174041669 174041839 -28286508 - L1MA8 LINE L1 -6 6285 6103 1622 209 23 3 chr4 174041847 174042153 -28286194 + MER44D DNA MER2_type 14 325 -380 1772 159 46 3 chr4 174042155 174042482 -28285865 + MSTB LTR MaLR 86 426 0 530 280 97 66 chr4 174042486 174043292 -28285055 - HAL1 LINE L1 -964 1543 713 226 212 45 15 chr4 174043484 174043550 -28284797 + Charlie7 DNA MER1_type 2531 2598 -14 444 301 121 5 chr4 174044355 174044561 -28283786 + MIR SINE MIR 21 250 -12 23 0 0 0 chr4 174045641 174045664 -28282683 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr4 174046579 174046608 -28281739 + AT_rich Low_complexity Low_complexity 1 29 0 430 290 55 27 chr4 174047540 174047723 -28280624 - MIR3 SINE MIR 0 208 21 24 100 0 0 chr4 174047832 174047912 -28280435 + AT_rich Low_complexity Low_complexity 1 80 0 1495 254 94 47 chr4 174047960 174048345 -28280002 - L1ME3A LINE L1 -44 6126 5699 1903 133 84 0 chr4 174048345 174048677 -28279670 - MER46B DNA MER2_type 0 236 2 1495 254 94 47 chr4 174048677 174048894 -28279453 - L1ME3A LINE L1 -471 5699 5494 2523 100 5 30 chr4 174048895 174049266 -28279081 - THE1B LTR MaLR 0 364 3 7391 182 58 74 chr4 174049268 174049757 -28278590 - THE1B-int LTR MaLR 0 1580 1084 408 187 0 0 chr4 174049757 174049832 -28278515 + MER46B DNA MER2_type 161 235 -1 7391 182 58 74 chr4 174049832 174050722 -28277625 - THE1B-int LTR MaLR -496 1084 151 450 83 0 0 chr4 174050722 174050782 -28277565 - THE1B-int LTR MaLR -1370 210 151 393 107 0 0 chr4 174050784 174050840 -28277507 - THE1B-int LTR MaLR -1372 208 153 1280 102 82 0 chr4 174050840 174051036 -28277311 - THE1B-int LTR MaLR -1368 212 1 2436 123 6 8 chr4 174051036 174051401 -28276946 - THE1B LTR MaLR 0 364 1 13506 223 56 36 chr4 174051428 174058223 -28270124 - L1MA5 LINE L1 0 7002 11 673 248 72 39 chr4 174058231 174058262 -28270085 - L1ME3A LINE L1 -716 5462 5433 1867 154 0 19 chr4 174058262 174058573 -28269774 - AluJb SINE Alu -7 305 1 673 248 72 39 chr4 174058573 174058760 -28269587 - L1ME3A LINE L1 -745 5433 5254 1582 218 52 3 chr4 174058760 174059108 -28269239 - MLT1A1 LTR MaLR 0 365 1 673 248 72 39 chr4 174059108 174059397 -28268950 - L1ME3A LINE L1 -924 5254 4992 286 322 124 41 chr4 174059538 174060079 -28268268 - L1MEd LINE L1 -5042 1077 492 2197 172 48 29 chr4 174060454 174060872 -28267475 + MSTC LTR MaLR 3 428 0 4187 243 200 29 chr4 174060874 174062355 -28265992 + MSTC-int LTR MaLR 2 1735 0 2069 147 81 30 chr4 174062355 174062762 -28265585 + MSTC LTR MaLR 1 428 0 24 0 0 0 chr4 174063666 174063690 -28264657 + AT_rich Low_complexity Low_complexity 1 24 0 1889 68 0 0 chr4 174063984 174064218 -28264129 - AluY SINE Alu -77 234 1 261 109 0 0 chr4 174064484 174064530 -28263817 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 226 321 64 21 chr4 174064698 174064838 -28263509 - MIR SINE MIR 0 262 117 431 245 61 48 chr4 174065210 174065357 -28262990 - MLT1K LTR MaLR -23 565 417 316 358 74 31 chr4 174065459 174065621 -28262726 - MLT1K LTR MaLR -329 259 91 24 0 0 0 chr4 174066059 174066083 -28262264 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr4 174066173 174066195 -28262152 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 185 333 0 0 chr4 174066644 174066698 -28261649 - MIR SINE MIR -5 257 204 239 317 144 61 chr4 174066713 174067073 -28261274 + L2 LINE L2 2249 2638 -676 330 338 66 15 chr4 174067302 174067438 -28260909 + L2 LINE L2 3127 3269 -3 287 331 121 0 chr4 174068018 174068175 -28260172 - MIR SINE MIR 0 262 87 266 349 54 40 chr4 174069603 174069752 -28258595 + MLT1J LTR MaLR 1 151 -360 411 303 46 11 chr4 174069766 174069941 -28258406 + MLT1J LTR MaLR 328 508 -3 302 256 40 88 chr4 174070414 174070675 -28257672 + MLT1H LTR MaLR 22 322 -227 389 213 74 0 chr4 174070735 174070843 -28257504 + MLT1H LTR MaLR 432 547 -2 29 28 0 0 chr4 174071072 174071108 -28257239 + AT_rich Low_complexity Low_complexity 1 36 0 1728 192 0 3 chr4 174071153 174071450 -28256897 - AluJo SINE Alu -16 296 1 1872 154 82 3 chr4 174072057 174072387 -28255960 - MSTB LTR MaLR 0 426 71 425 149 45 0 chr4 174072461 174072528 -28255819 - MSTB LTR MaLR -356 70 1 197 369 85 21 chr4 174072563 174072728 -28255619 + MIR SINE MIR 37 206 -56 211 291 0 0 chr4 174073776 174073831 -28254516 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 1152 232 4 0 chr4 174074171 174074434 -28253913 - L1PB4 LINE L1 -1 6155 5892 210 37 0 0 chr4 174074839 174074866 -28253481 + (TG)n Simple_repeat Simple_repeat 2 28 0 402 21 0 0 chr4 174074869 174074916 -28253431 + (TA)n Simple_repeat Simple_repeat 1 47 0 1641 166 20 116 chr4 174076379 174076837 -28251510 + MLT2D LTR ERVL 1 414 0 271 194 45 15 chr4 174079046 174079113 -28249234 - L2 LINE L2 -558 2756 2688 482 208 0 10 chr4 174079147 174079248 -28249099 - L1MD3 LINE L1 -549 7446 7347 423 0 0 0 chr4 174079254 174079301 -28249046 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 533 189 0 11 chr4 174079353 174079443 -28248904 - 7SLRNA srpRNA srpRNA -21 299 211 484 275 6 44 chr4 174079444 174079611 -28248736 - MIR SINE MIR -39 223 65 1424 204 38 46 chr4 174079731 174080099 -28248248 - MLT1A1 LTR MaLR 0 365 1 2447 170 33 25 chr4 174080120 174080633 -28247714 + L1MA8 LINE L1 5746 6262 -29 633 171 86 29 chr4 174080844 174080984 -28247363 + L1MB8 LINE L1 6030 6177 -1 1023 168 34 6 chr4 174081128 174081307 -28247040 + MLT1A2 LTR MaLR 191 374 0 222 266 3 20 chr4 174081309 174081378 -28246969 - MIR SINE MIR -102 106 40 428 267 4 4 chr4 174081510 174081762 -28246585 + CT-rich Low_complexity Low_complexity 1 252 0 224 300 0 17 chr4 174082169 174082229 -28246118 - L2 LINE L2 -8 3305 3247 285 319 319 0 chr4 174082622 174082788 -28245559 + MIR SINE MIR 13 231 -31 530 294 47 28 chr4 174083162 174083373 -28244974 - MIR SINE MIR -20 242 28 2413 90 0 3 chr4 174083459 174083769 -28244578 + AluSc SINE Alu 1 309 0 294 29 0 0 chr4 174084036 174084071 -28244276 + (CA)n Simple_repeat Simple_repeat 1 35 0 209 386 38 4 chr4 174085083 174085218 -28243129 - MIR SINE MIR -55 153 10 5992 141 4 4 chr4 174085250 174086205 -28242142 - Tigger1 DNA MER2_type 0 2418 1464 3369 163 55 6 chr4 174086265 174086902 -28241445 - L1MA4 LINE L1 -24 6276 5609 266 105 26 0 chr4 174086903 174086941 -28241406 + L1M1 LINE L1 5613 5651 -649 2274 195 36 68 chr4 174086947 174087611 -28240736 - L1 LINE L1 -3400 4165 3523 6212 183 8 0 chr4 174087614 174088682 -28239665 - Tigger1 DNA MER2_type -1342 1076 1 21 0 0 0 chr4 174088890 174088911 -28239436 + AT_rich Low_complexity Low_complexity 1 21 0 6732 192 28 16 chr4 174088929 174089357 -28238990 - L1PA16 LINE L1 -8 6158 5737 279 0 0 0 chr4 174089357 174089388 -28238959 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1906 134 0 0 chr4 174089392 174089667 -28238680 - AluSx SINE Alu -37 275 1 6732 192 28 16 chr4 174089667 174091608 -28236739 - L1PA16 LINE L1 -431 5735 3767 2129 169 72 8 chr4 174092418 174092820 -28235527 + MSTA LTR MaLR 1 428 0 435 323 26 13 chr4 174092925 174093080 -28235267 - L1MC/D LINE L1 -2089 5719 5563 32 98 0 0 chr4 174093160 174093262 -28235085 + AT_rich Low_complexity Low_complexity 1 102 0 1423 62 5 10 chr4 174093526 174093720 -28234627 - L1PA8 LINE L1 -223 5949 5757 1572 67 5 22 chr4 174093720 174093943 -28234404 + L1PA8 LINE L1 5952 6170 -2 308 343 21 7 chr4 174093943 174094086 -28234261 - L1MC/D LINE L1 -1089 5057 4913 280 261 15 23 chr4 174094118 174094248 -28234099 + (TA)n Simple_repeat Simple_repeat 1 129 0 486 286 61 68 chr4 174094248 174094542 -28233805 - L1MC/D LINE L1 -1327 4819 4528 4458 105 16 12 chr4 174094551 174095229 -28233118 + L1PA16 LINE L1 5477 6157 -9 992 280 65 52 chr4 174095320 174095816 -28232531 - MLT1J LTR MaLR -9 502 1 362 358 77 14 chr4 174097047 174097254 -28231093 + MIR SINE MIR 2 221 -41 238 254 14 0 chr4 174097270 174097341 -28231006 + (CTA)n Simple_repeat Simple_repeat 1 72 0 807 246 118 28 chr4 174097548 174097929 -28230418 + MLT1H LTR MaLR 60 549 0 22 35 0 0 chr4 174098078 174098107 -28230240 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 174098242 174098264 -28230083 + AT_rich Low_complexity Low_complexity 1 22 0 817 101 14 7 chr4 174098581 174098720 -28229627 + (GGAA)n Simple_repeat Simple_repeat 1 140 0 2161 286 160 68 chr4 174100190 174100718 -28227629 - L2 LINE L2 -264 3049 2571 314 58 39 0 chr4 174100718 174100770 -28227577 + L1MA1 LINE L1 6032 6085 -217 2161 286 160 68 chr4 174100770 174101844 -28226503 - L2 LINE L2 -742 2571 1238 2582 85 0 11 chr4 174103918 174104282 -28224065 - L1PA7 LINE L1 0 6154 5795 315 377 75 7 chr4 174104726 174104872 -28223475 + MIR3 SINE MIR 50 205 -3 22 0 0 0 chr4 174105057 174105079 -28223268 + AT_rich Low_complexity Low_complexity 1 22 0 257 283 53 79 chr4 174105317 174105469 -28222878 - MIR SINE MIR -39 223 76 1724 108 0 0 chr4 174105718 174105949 -28222398 + AluSq SINE Alu 1 231 -82 273 119 0 0 chr4 174105973 174106015 -28222332 + (A)n Simple_repeat Simple_repeat 1 42 0 210 222 0 0 chr4 174106764 174106818 -28221529 + (TA)n Simple_repeat Simple_repeat 1 54 0 334 301 105 11 chr4 174107063 174107349 -28220998 - L1M4 LINE L1 -1329 4817 4505 * 503 247 10 31 chr4 174107346 174107540 -28220807 - L1M4 LINE L1 -2163 3983 3794 1198 289 73 14 chr4 174107540 174108158 -28220189 - L2 LINE L2 -4 3309 2658 33 50 0 38 chr4 174108899 174108979 -28219368 + AT_rich Low_complexity Low_complexity 1 77 0 2478 56 16 0 chr4 174109050 174109354 -28218993 + AluY SINE Alu 1 309 -2 1609 154 81 10 chr4 174109355 174109653 -28218694 + Tigger1 DNA MER2_type 2084 2402 -16 1275 218 18 3 chr4 174111603 174111887 -28216460 + L1MA7 LINE L1 4668 4955 -1191 1078 113 0 0 chr4 174111887 174112076 -28216271 + AluSg/x SINE Alu 141 329 0 4271 166 19 7 chr4 174112076 174113163 -28215184 + L1MA7 LINE L1 4953 6054 -237 2896 72 0 5 chr4 174113577 174113966 -28214381 - L1PA8 LINE L1 -3 6169 5783 27 49 0 0 chr4 174114467 174114508 -28213839 + AT_rich Low_complexity Low_complexity 1 41 0 230 323 45 8 chr4 174114833 174114966 -28213381 - MER117 DNA MER1_type -48 149 12 642 282 191 9 chr4 174115154 174115374 -28212973 - MIR SINE MIR 0 262 3 717 265 60 16 chr4 174115595 174115844 -28212503 + MIR SINE MIR 3 262 0 5487 49 7 0 chr4 174117572 174118262 -28210085 - L1PA5 LINE L1 0 6154 5460 486 307 85 9 chr4 174118436 174118648 -28209699 - LTR33 LTR ERVL -293 228 1 23 68 0 0 chr4 174118762 174118806 -28209541 + AT_rich Low_complexity Low_complexity 1 44 0 306 338 15 30 chr4 174119523 174119721 -28208626 - L1ME LINE L1 -400 5721 5527 31 58 0 0 chr4 174120011 174120063 -28208284 + AT_rich Low_complexity Low_complexity 1 52 0 647 205 53 20 chr4 174120219 174120370 -28207977 + MIR SINE MIR 104 259 -3 680 258 118 0 chr4 174120370 174120591 -28207756 + MER46C DNA MER2_type 25 271 -67 1859 219 3 3 chr4 174120694 174121059 -28207288 - MLT1A1 LTR MaLR 0 365 1 180 379 32 0 chr4 174121749 174121844 -28206503 - MIR SINE MIR -64 144 47 242 160 20 0 chr4 174123430 174123480 -28204867 + (TA)n Simple_repeat Simple_repeat 1 51 0 457 300 62 0 chr4 174123603 174123763 -28204584 + MIR SINE MIR 74 243 -19 2109 110 0 52 chr4 174123838 174124164 -28204183 + AluSx SINE Alu 1 309 -3 2998 109 99 4 chr4 174125431 174125928 -28202419 - L1MA3 LINE L1 0 6305 5762 203 343 0 0 chr4 174127123 174127222 -28201125 + A-rich Low_complexity Low_complexity 1 99 0 335 273 33 33 chr4 174127547 174127668 -28200679 + MLT1I LTR MaLR 289 409 0 1364 186 85 60 chr4 174178522 174178888 -28149459 - THE1C LTR MaLR 0 375 1 1748 132 12 8 chr4 174179823 174180081 -28148266 - AluSx SINE Alu -33 279 21 2116 134 0 0 chr4 174180170 174180469 -28147878 - AluSx SINE Alu -12 300 2 280 222 12 0 chr4 174180549 174180630 -28147717 + (TA)n Simple_repeat Simple_repeat 2 83 0 32926 39 4 0 chr4 174181280 174185999 -28142348 + L1PA4 LINE L1 1418 6152 -3 483 288 73 37 chr4 174186045 174186169 -28142178 - LTR33 LTR ERVL -103 418 300 3202 107 40 2 chr4 174186169 174186617 -28141730 + MER4C LTR ERV1 1 465 0 483 288 73 37 chr4 174186617 174186880 -28141467 - LTR33 LTR ERVL -221 300 1 350 333 54 8 chr4 174186953 174187193 -28141154 + L1ME4a LINE L1 5602 5852 -269 27 0 0 0 chr4 174187389 174187416 -28140931 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr4 174187515 174187539 -28140808 + AT_rich Low_complexity Low_complexity 1 24 0 2400 161 168 170 chr4 174188126 174189148 -28139199 - LTR28 LTR ERV1 0 1020 1 322 351 111 32 chr4 174189255 174189787 -28138560 + L2 LINE L2 2278 2851 -463 1227 189 29 0 chr4 174189878 174190116 -28138231 - L1MA6 LINE L1 0 6300 6056 1316 45 6 57 chr4 174190116 174190290 -28138057 - L1PA2 LINE L1 0 6155 5989 318 191 36 25 chr4 174190299 174190582 -28137765 + C-rich Low_complexity Low_complexity 1 286 0 203 65 120 11 chr4 174190591 174190683 -28137664 + (CACAC)n Simple_repeat Simple_repeat 5 106 0 43790 36 22 1 chr4 174190891 174196747 -28131600 - L1PA2 LINE L1 -173 5982 1 919 146 18 6 chr4 174196745 174196910 -28131437 - L1MA6 LINE L1 -236 6064 5898 * 794 245 154 36 chr4 174197033 174197364 -28130983 + MLT1D LTR MaLR 18 387 -118 6115 178 28 23 chr4 174197384 174199642 -28128705 - L1PA16 LINE L1 -20 6146 3873 602 162 18 9 chr4 174199652 174199763 -28128584 + MLT1B LTR MaLR 279 390 0 378 258 126 33 chr4 174199876 174200027 -28128320 + MIR SINE MIR 86 250 -12 191 430 61 18 chr4 174200158 174200272 -28128075 + L2 LINE L2 3129 3247 -25 42043 52 7 2 chr4 174200362 174206477 -28121870 + L1PA4 LINE L1 4 6153 -2 26 30 0 0 chr4 174206619 174206652 -28121695 + AT_rich Low_complexity Low_complexity 1 33 0 364 283 113 9 chr4 174206834 174206940 -28121407 + L2 LINE L2 3151 3267 -5 209 289 140 53 chr4 174206969 174207083 -28121264 - MIR SINE MIR -68 140 17 548 283 14 21 chr4 174208186 174208331 -28120016 + MER5B DNA MER1_type 14 157 -21 5702 128 11 4 chr4 174211246 174212618 -28115729 + L1PA16 LINE L1 4785 6166 0 24 77 0 0 chr4 174213948 174214000 -28114347 + AT_rich Low_complexity Low_complexity 1 52 0 843 287 45 20 chr4 174214509 174214756 -28113591 - MIR SINE MIR -1 261 9 226 275 14 0 chr4 174214996 174215065 -28113282 - LTR16A LTR ERVL -173 277 208 547 242 17 0 chr4 174215282 174215402 -28112945 - MER94 DNA DNA 0 134 13 270 217 43 22 chr4 174216602 174216694 -28111653 - LTR37B LTR ERV1 -163 305 212 14897 182 27 12 chr4 174216695 174222062 -28106285 - L1PB1 LINE L1 -13 6854 1395 459 249 109 16 chr4 174222042 174222235 -28106112 - L1PB1 LINE L1 -6647 216 6 * 13237 110 7 0 chr4 174222303 174224198 -28104149 + L1P LINE L1 11 1918 -4228 7289 42 1 3 chr4 174224227 174225691 -28102656 + L1PA5 LINE L1 4678 6153 -1 1417 183 41 0 chr4 174225704 174225950 -28102397 - AluJo SINE Alu -54 258 3 377 250 0 0 chr4 174226104 174226192 -28102155 - LTR37B LTR ERV1 -373 95 8 240 288 162 9 chr4 174226644 174226755 -28101592 + MIR SINE MIR 24 151 -111 695 127 67 60 chr4 174226763 174226897 -28101450 + MLT1B LTR MaLR 1 135 -255 1824 169 65 83 chr4 174226898 174227467 -28100880 - LTR38B LTR ERV1 0 611 1 1310 152 14 90 chr4 174227467 174227744 -28100603 + MLT1B LTR MaLR 133 388 -2 207 279 0 0 chr4 174227900 174227943 -28100404 + L2 LINE L2 3252 3294 -19 24 0 0 0 chr4 174227954 174227978 -28100369 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 174228815 174228836 -28099511 + AT_rich Low_complexity Low_complexity 1 21 0 877 145 7 0 chr4 174230165 174230303 -28098044 - FLAM_C SINE Alu -4 139 1 2173 89 9 46 chr4 174230313 174230637 -28097710 - AluSx SINE Alu 0 312 1 241 269 0 13 chr4 174230901 174230979 -28097368 + L1MC3 LINE L1 5760 5836 -1972 231 265 166 55 chr4 174231398 174231579 -28096768 - MLT1K LTR MaLR -190 398 198 623 128 0 0 chr4 174233449 174233551 -28094796 + L1MA8 LINE L1 5861 5962 -329 1961 164 88 21 chr4 174233559 174233991 -28094356 + LOR1b LTR ERV1 1 461 0 1261 159 38 11 chr4 174233991 174234255 -28094092 + L1MA8 LINE L1 6019 6289 -2 22 0 0 0 chr4 174235400 174235422 -28092925 + AT_rich Low_complexity Low_complexity 1 22 0 2831 182 26 37 chr4 174235757 174236511 -28091836 - L1 LINE L1 -2496 3650 2905 1963 193 33 7 chr4 174236517 174236942 -28091405 + L1MA6 LINE L1 5860 6295 -5 30 59 0 0 chr4 174237082 174237133 -28091214 + AT_rich Low_complexity Low_complexity 1 51 0 191 311 68 54 chr4 174237245 174237319 -28091028 - L2 LINE L2 -1 3271 3197 691 281 9 2 chr4 174237373 174237606 -28090741 - MER82 DNA MER2_type 0 653 385 466 225 9 0 chr4 174237682 174237793 -28090554 + L1MC3 LINE L1 6853 6964 -821 514 209 19 0 chr4 174237834 174237939 -28090408 + L1MB5 LINE L1 6059 6165 -9 4738 170 40 30 chr4 174238102 174239120 -28089227 + L1PA16 LINE L1 4379 5414 -752 2497 56 3 3 chr4 174239120 174239423 -28088924 + AluY SINE Alu 1 303 -8 4738 170 40 30 chr4 174239423 174240142 -28088205 + L1PA16 LINE L1 5414 6125 -41 411 265 265 0 chr4 174240391 174240523 -28087824 - HAL1 LINE L1 -1683 824 658 648 171 24 12 chr4 174240525 174240689 -28087658 + MER53 DNA DNA 1 166 -23 407 268 142 70 chr4 174240843 174241145 -28087202 - HAL1 LINE L1 -2028 479 156 287 284 128 49 chr4 174241268 174241962 -28086385 + L1P LINE L1 3589 4347 -1799 816 270 80 59 chr4 174242114 174242394 -28085953 + L1ME3A LINE L1 4568 4841 -1305 2261 119 3 0 chr4 174242394 174242705 -28085642 - AluSx SINE Alu 0 312 1 816 270 80 59 chr4 174242705 174243121 -28085226 + L1ME3A LINE L1 4841 5279 -867 805 271 126 20 chr4 174243204 174243698 -28084649 + L1ME3A LINE L1 5398 5943 -227 270 81 0 0 chr4 174243864 174243901 -28084446 + (T)n Simple_repeat Simple_repeat 1 37 0 1337 65 0 32 chr4 174244082 174244268 -28084079 - AluY SINE Alu -131 180 1 387 118 35 0 chr4 174244632 174244717 -28083630 + L1MCa LINE L1 1914 2001 -4425 548 76 13 0 chr4 174245213 174245292 -28083055 - L1PA8 LINE L1 -8 6164 6085 1040 78 0 0 chr4 174245618 174245746 -28082601 - AluSg/x SINE Alu -11 299 172 289 270 107 30 chr4 174246420 174246585 -28081762 + MIR SINE MIR 40 217 -45 202 360 16 24 chr4 174246803 174246928 -28081419 - MIR3 SINE MIR -50 158 35 252 200 0 0 chr4 174247342 174247397 -28080950 + (TG)n Simple_repeat Simple_repeat 1 55 0 1609 166 3 38 chr4 174247498 174247811 -28080536 + AluJb SINE Alu 1 302 -10 21 36 0 0 chr4 174248069 174248097 -28080250 + AT_rich Low_complexity Low_complexity 1 28 0 194 339 68 0 chr4 174248253 174248312 -28080035 - MIR SINE MIR -63 145 83 1352 172 0 9 chr4 174248761 174248993 -28079354 - AluJb SINE Alu -4 308 79 220 170 43 0 chr4 174248993 174249040 -28079307 + CT-rich Low_complexity Low_complexity 3 51 0 23 54 0 0 chr4 174249133 174249170 -28079177 + AT_rich Low_complexity Low_complexity 1 37 0 466 234 35 41 chr4 174249603 174249643 -28078704 + MIR SINE MIR 119 158 -104 1580 180 35 90 chr4 174249643 174250077 -28078270 - MLT2D LTR ERVL 0 414 5 466 234 35 41 chr4 174250077 174250181 -28078166 + MIR SINE MIR 158 262 0 780 260 37 88 chr4 174251747 174252212 -28076135 + LTR16A1 LTR ERVL 1 441 -16 386 333 69 0 chr4 174253540 174253684 -28074663 - MIR SINE MIR -6 256 103 1726 246 102 0 chr4 174253817 174254309 -28074038 - MLT1E LTR MaLR -2 591 50 281 150 4 50 chr4 174255867 174256115 -28072232 + (TA)n Simple_repeat Simple_repeat 1 236 0 631 117 78 106 chr4 174257481 174257502 -28070845 + L1MA3 LINE L1 6132 6152 -153 578 147 20 10 chr4 174257502 174257604 -28070743 + U6 snRNA snRNA 5 107 0 631 117 78 106 chr4 174257604 174257761 -28070586 + L1MA3 LINE L1 6152 6305 0 299 363 9 18 chr4 174258022 174258135 -28070212 - MIR SINE MIR -71 137 26 11765 201 52 36 chr4 174259501 174266174 -28062173 + L1MA4A LINE L1 207 6982 -23 872 257 19 0 chr4 174266222 174266428 -28061919 - MER58A DNA MER1_type -13 211 2 28233 103 15 36 chr4 174266921 174273449 -28054898 + L1PA7 LINE L1 8 6469 0 1125 169 53 12 chr4 174273461 174273704 -28054643 - L1 LINE L1 -1023 5123 4871 2327 174 77 5 chr4 174273713 174274639 -28053708 + L1MB2 LINE L1 5259 6284 -7 38 0 0 0 chr4 174274646 174274684 -28053663 + AT_rich Low_complexity Low_complexity 1 38 0 407 283 76 58 chr4 174275423 174275654 -28052693 - MIR SINE MIR -9 253 17 297 381 87 6 chr4 174276568 174276741 -28051606 + MER5A DNA MER1_type 2 188 -1 299 318 68 32 chr4 174277869 174278089 -28050258 + L1MC/D LINE L1 5557 5784 -2024 343 253 25 0 chr4 174278246 174278325 -28050022 - L2 LINE L2 -563 2751 2671 2237 53 0 0 chr4 174278336 174278600 -28049747 + AluY SINE Alu 37 300 -11 397 82 0 0 chr4 174278606 174278667 -28049680 + L1MA1 LINE L1 6239 6299 -3 2107 132 0 0 chr4 174278687 174278976 -28049371 + AluSg SINE Alu 1 289 -21 319 246 105 26 chr4 174279167 174279195 -28049152 - L2 LINE L2 -740 2574 2550 2174 113 0 0 chr4 174279195 174279487 -28048860 - AluSx SINE Alu -20 292 1 319 246 105 26 chr4 174279487 174279572 -28048775 - L2 LINE L2 -764 2550 2452 366 313 15 23 chr4 174280980 174281111 -28047236 - L2 LINE L2 0 3313 3184 682 173 8 0 chr4 174281368 174281495 -28046852 + MIR SINE MIR 71 198 -64 281 350 23 23 chr4 174281591 174281919 -28046428 + L1ME LINE L1 802 1121 -5961 910 179 10 51 chr4 174282544 174282740 -28045607 + AluJo SINE Alu 120 307 -5 439 253 39 63 chr4 174282740 174282910 -28045437 + L1ME LINE L1 1411 1584 -5373 1776 188 40 8 chr4 174282910 174283261 -28045086 + MLT1A1 LTR MaLR 4 365 0 439 253 39 63 chr4 174283261 174283399 -28044948 + L1ME LINE L1 1584 1813 -5144 268 257 29 19 chr4 174283736 174283841 -28044506 + L1ME4a LINE L1 5589 5694 -427 734 176 18 12 chr4 174284000 174284165 -28044182 + MER104 DNA Tc2 15 180 0 774 257 99 0 chr4 174284244 174284466 -28043881 + MIR SINE MIR 19 262 0 292 276 152 0 chr4 174284477 174284622 -28043725 + L1ME4a LINE L1 5952 6118 -3 1057 44 0 0 chr4 174284879 174285014 -28043333 + L1PA4 LINE L1 6021 6155 0 277 341 32 77 chr4 174285437 174285657 -28042690 + MIR SINE MIR 28 237 -25 1910 182 25 22 chr4 174285673 174286075 -28042272 + MER57A LTR ERV1 1 403 0 708 24 0 0 chr4 174286448 174286532 -28041815 + L1PA5 LINE L1 15 98 -6048 * 36400 46 2 4 chr4 174286530 174292068 -28036279 + L1PA5 LINE L1 623 6146 -8 17099 57 7 1 chr4 174292482 174294691 -28033656 + HERV17 LTR ERV1 6404 8626 0 2293 74 45 0 chr4 174294691 174295003 -28033344 + LTR17 LTR ERV1 1 326 -454 201 159 0 0 chr4 174295864 174295908 -28032439 + (CA)n Simple_repeat Simple_repeat 1 44 0 246 304 52 76 chr4 174296544 174296794 -28031553 - L2 LINE L2 -1219 2095 1852 225 287 77 91 chr4 174296814 174296957 -28031390 + L2 LINE L2 3115 3255 -17 24 32 0 0 chr4 174297859 174297890 -28030457 + AT_rich Low_complexity Low_complexity 1 31 0 391 282 32 8 chr4 174298120 174298244 -28030103 + MIR SINE MIR 57 183 -79 26 82 0 0 chr4 174298636 174298697 -28029650 + AT_rich Low_complexity Low_complexity 1 61 0 1173 147 101 107 chr4 174299498 174299844 -28028503 + LTR14A LTR ERVK 1 344 0 752 165 8 0 chr4 174299920 174300053 -28028294 + MSTD LTR MaLR 233 366 -30 326 320 56 2 chr4 174301277 174301408 -28026939 + MIR SINE MIR 15 154 -54 233 256 0 0 chr4 174301982 174302025 -28026322 + L2 LINE L2 3217 3259 -13 933 195 0 6 chr4 174302044 174302208 -28026139 - FRAM SINE Alu -17 159 1 195 42 0 0 chr4 174302635 174302659 -28025688 + (CA)n Simple_repeat Simple_repeat 1 24 0 345 292 172 4 chr4 174302996 174303263 -28025084 + MARNA DNA Mariner 141 452 -134 1009 179 0 0 chr4 174303264 174303420 -28024927 + AluJb SINE Alu 137 292 -20 21 0 0 0 chr4 174303420 174303441 -28024906 + AT_rich Low_complexity Low_complexity 1 21 0 2041 130 31 3 chr4 174303497 174303789 -28024558 + AluSx SINE Alu 1 300 -12 499 218 21 7 chr4 174304088 174304230 -28024117 - MER103 DNA DNA -11 155 12 14460 101 14 6 chr4 174304260 174306430 -28021917 + L1PA5 LINE L1 11 2197 -3949 14058 53 24 1 chr4 174306415 174309097 -28019250 + L1PA5 LINE L1 3390 6139 -15 * 183 42 0 0 chr4 174309102 174309126 -28019221 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1183 216 300 6 chr4 174309432 174309928 -28018419 + L1MC3 LINE L1 7124 7765 -20 408 298 194 5 chr4 174310008 174310199 -28018148 + MIR SINE MIR 19 245 -17 290 315 153 60 chr4 174310240 174310554 -28017793 + L3 LINE CR1 902 1244 -333 1656 173 3 22 chr4 174310576 174310888 -28017459 + AluJo SINE Alu 1 306 -6 21 36 0 0 chr4 174311071 174311099 -28017248 + AT_rich Low_complexity Low_complexity 1 28 0 6197 105 1 15 chr4 174311615 174312597 -28015750 + L1P LINE L1 1874 2841 -3305 891 176 0 0 chr4 174312630 174312772 -28015575 + AluSq/x SINE Alu 1 142 -171 13960 96 14 5 chr4 174312772 174314839 -28013508 + L1P LINE L1 5 2088 -4058 183 315 48 55 chr4 174314886 174315051 -28013296 + L2 LINE L2 1534 1697 -1617 749 244 115 75 chr4 174315094 174315232 -28013115 - L2 LINE L2 0 3313 3182 2082 120 3 3 chr4 174315232 174315523 -28012824 + AluSx SINE Alu 1 291 -21 749 244 115 75 chr4 174315523 174315732 -28012615 - L2 LINE L2 -131 3182 2952 425 287 154 54 chr4 174315757 174315887 -28012460 + L2 LINE L2 2186 2302 -1012 1241 231 59 46 chr4 174315887 174316345 -28012002 - MLT1C LTR MaLR 0 467 4 425 287 154 54 chr4 174316345 174316642 -28011705 + L2 LINE L2 2302 2656 -658 357 229 0 0 chr4 174316917 174317000 -28011347 - L1MA9 LINE L1 -351 5961 5879 521 62 21 21 chr4 174317748 174317845 -28010502 + (TA)n Simple_repeat Simple_repeat 1 97 0 2753 148 14 3 chr4 174317856 174318503 -28009844 - L1MA9 LINE L1 -573 5739 5088 2461 21 0 0 chr4 174318624 174318910 -28009437 - L1PA4 LINE L1 -4 6151 5866 234 316 98 40 chr4 174318979 174319153 -28009194 - MIR3 SINE MIR -13 195 12 475 272 70 33 chr4 174319291 174319504 -28008843 - MIR SINE MIR -6 256 36 1846 210 69 6 chr4 174319596 174320062 -28008285 - MER50 LTR ERV1 0 734 240 316 278 243 0 chr4 174320653 174320797 -28007550 + MIR SINE MIR 84 262 0 22 56 0 0 chr4 174321119 174321155 -28007192 + AT_rich Low_complexity Low_complexity 1 36 0 611 339 13 4 chr4 174322718 174322948 -28005399 + MIR SINE MIR 31 262 0 1368 63 0 0 chr4 174323083 174323258 -28005089 + L1PA8 LINE L1 5994 6168 -4 186 282 77 39 chr4 174324142 174324220 -28004127 - MIR SINE MIR -117 145 65 513 278 20 7 chr4 174324222 174324373 -28003974 + MIR SINE MIR 80 232 -30 2123 167 29 2 chr4 174325285 174325698 -28002649 - L1MD1 LINE L1 -6 6236 5813 1438 155 32 0 chr4 174325706 174325984 -28002363 - L1MA4 LINE L1 -8 6292 6006 31569 66 16 2 chr4 174325985 174330165 -27998182 + HERVL LTR ERVL 19 4258 -1396 920 236 65 53 chr4 174330165 174330581 -27997766 - MLT1C LTR MaLR -46 421 1 249 290 140 0 chr4 174330581 174330674 -27997673 - MIR SINE MIR -151 111 6 359 238 12 12 chr4 174332270 174332354 -27995993 + L2 LINE L2 3223 3306 -7 2071 114 7 10 chr4 174332598 174332906 -27995441 + AluSx SINE Alu 2 308 -4 2250 180 11 2 chr4 174333346 174333780 -27994567 + L1PA16 LINE L1 5707 6144 -22 2502 47 3 3 chr4 174335122 174335419 -27992928 - AluY SINE Alu -12 299 3 214 182 23 0 chr4 174335940 174335984 -27992363 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 598 316 18 13 chr4 174336318 174336543 -27991804 - MLT1I LTR MaLR -10 399 174 423 0 0 0 chr4 174337033 174337080 -27991267 + (TG)n Simple_repeat Simple_repeat 2 48 0 362 247 11 0 chr4 174338132 174338221 -27990126 + LTR41 LTR ERVL 77 166 -607 226 211 0 42 chr4 174338629 174338700 -27989647 + LTR41 LTR ERVL 681 748 -25 2161 111 0 14 chr4 174338913 174339210 -27989137 + AluSq SINE Alu 1 293 -20 246 354 39 0 chr4 174340704 174340831 -27987516 + L2 LINE L2 2522 2653 -661 436 269 77 33 chr4 174340871 174341336 -27987011 + L1ME3A LINE L1 4910 5404 -757 645 252 22 18 chr4 174341390 174341616 -27986731 + L1ME3A LINE L1 5398 5624 -538 386 236 47 6 chr4 174341694 174341858 -27986489 + L1ME3A LINE L1 5786 5968 -202 282 277 82 38 chr4 174341920 174342104 -27986243 + L1ME3A LINE L1 5967 6158 -12 2139 125 7 0 chr4 174342167 174342464 -27985883 + AluSx SINE Alu 1 299 -13 374 309 137 11 chr4 174343258 174343543 -27984804 - MLT1H LTR MaLR 0 549 229 1278 224 128 91 chr4 174343564 174344282 -27984065 + LTR1B LTR ERV1 1 745 -81 236 287 170 11 chr4 174344571 174344665 -27983682 - MIR3 SINE MIR -87 121 13 335 337 58 5 chr4 174345344 174345534 -27982813 + MIR SINE MIR 51 250 -12 26 0 0 0 chr4 174346085 174346111 -27982236 + AT_rich Low_complexity Low_complexity 1 26 0 210 171 0 0 chr4 174346382 174346423 -27981924 + (CATA)n Simple_repeat Simple_repeat 4 44 0 1891 165 0 0 chr4 174346517 174346808 -27981539 + AluJb SINE Alu 3 293 -19 2104 140 3 0 chr4 174347061 174347361 -27980986 - AluSx SINE Alu -11 301 1 270 313 0 0 chr4 174347452 174347532 -27980815 + MIR SINE MIR 110 189 -73 2580 62 0 7 chr4 174348076 174348385 -27979962 - AluY SINE Alu -4 307 1 2118 138 10 0 chr4 174348523 174348828 -27979519 - AluSx SINE Alu -2 310 3 826 173 0 0 chr4 174349388 174349521 -27978826 + FLAM_C SINE Alu 1 133 -10 1218 242 66 42 chr4 174349868 174350381 -27977966 - MLT1E LTR MaLR 0 593 1 259 256 90 19 chr4 174350438 174350570 -27977777 - MIR SINE MIR -55 153 16 743 195 13 13 chr4 174351369 174351528 -27976819 - MSTD LTR MaLR -237 159 1 1688 171 70 47 chr4 174352493 174352880 -27975467 + MSTD LTR MaLR 1 396 0 348 318 61 40 chr4 174353933 174354081 -27974266 - MIR SINE MIR -4 258 108 1568 186 0 47 chr4 174354912 174355229 -27973118 - AluJo SINE Alu -6 306 5 2023 122 11 3 chr4 174357051 174357337 -27971010 + AluSq SINE Alu 5 292 -21 325 252 19 19 chr4 174358209 174358316 -27970031 - MER103 DNA DNA -16 150 44 3458 118 24 43 chr4 174358409 174358985 -27969362 + MER61E LTR ERV1 1 565 -4 1744 162 0 27 chr4 174359213 174359547 -27968800 - L1MB3 LINE L1 -2 6181 5857 607 255 20 0 chr4 174360621 174360770 -27967577 + MIR SINE MIR 70 221 -41 1808 156 11 0 chr4 174363833 174364108 -27964239 + AluSx SINE Alu 7 284 -28 1150 219 9 4 chr4 174466641 174466874 -27861473 - AluJo SINE Alu -78 234 1 1913 219 22 75 chr4 174466875 174467220 -27861127 - MER68 LTR ERV1 -81 481 170 2353 115 3 0 chr4 174467220 174467532 -27860815 - AluSq SINE Alu 0 313 1 1913 219 22 75 chr4 174467532 174467694 -27860653 - MER68 LTR ERV1 -392 170 1 2025 142 20 0 chr4 174467989 174468285 -27860062 - AluSx SINE Alu -10 302 1 193 189 0 0 chr4 174468300 174468337 -27860010 + L2 LINE L2 2222 2258 -1056 982 426 23 19 chr4 174468728 174469038 -27859309 + AluJo SINE Alu 1 311 -1 811 145 0 0 chr4 174469047 174469164 -27859183 + FLAM_C SINE Alu 1 117 -26 36 0 0 0 chr4 174469169 174469205 -27859142 + AT_rich Low_complexity Low_complexity 1 36 0 2124 136 7 3 chr4 174469403 174469713 -27858634 + AluSx SINE Alu 1 311 -1 349 286 160 22 chr4 174469734 174470003 -27858344 + L1M4 LINE L1 4273 4578 -1568 25 0 0 0 chr4 174470033 174470058 -27858289 + AT_rich Low_complexity Low_complexity 1 25 0 2285 102 7 0 chr4 174470164 174470469 -27857878 + AluSg SINE Alu 1 307 -3 3732 70 4 2 chr4 174470754 174471239 -27857108 - L1PA10 LINE L1 -9 6159 5674 673 209 0 0 chr4 174471239 174471354 -27856993 - AluJb SINE Alu -196 116 2 2249 112 0 3 chr4 174471594 174471898 -27856449 + AluSq SINE Alu 1 303 -10 1195 178 194 4 chr4 174472272 174472525 -27855822 + AluJo SINE Alu 1 301 -1 227 212 45 23 chr4 174472614 174472657 -27855690 + (TA)n Simple_repeat Simple_repeat 2 43 -93 1835 120 58 4 chr4 174472657 174472931 -27855416 + AluSq SINE Alu 1 289 -24 227 212 45 23 chr4 174472931 174473019 -27855328 + (TA)n Simple_repeat Simple_repeat 43 136 0 609 202 90 40 chr4 174473056 174473279 -27855068 - L1MC4 LINE L1 -647 7395 7162 2124 4 0 4 chr4 174473382 174473611 -27854736 + AluYb8 SINE Alu 1 228 -90 666 220 67 153 chr4 174473716 174474433 -27853914 + L1MCa LINE L1 843 1486 -4940 1245 221 104 22 chr4 174474433 174474750 -27853597 - MER7A DNA MER2_type -2 344 4 666 220 67 153 chr4 174474750 174474827 -27853520 + L1MCa LINE L1 1486 1568 -4858 411 78 31 0 chr4 174474839 174474903 -27853444 - Alu SINE Alu -8 304 239 619 66 0 0 chr4 174475003 174475079 -27853268 - AluS SINE Alu -211 101 26 728 181 147 57 chr4 174475220 174475485 -27852862 + MLT1A1 LTR MaLR 73 361 -4 450 198 12 0 chr4 174475484 174475565 -27852782 + MER77 LTR ERV1 518 599 -6 * 2033 122 7 10 chr4 174475601 174475896 -27852451 + AluSx SINE Alu 1 294 -18 2430 207 9 20 chr4 174476087 174476623 -27851724 - L1MB1 LINE L1 -12 6156 5627 1246 138 0 6 chr4 174476723 174476897 -27851450 - AluSg SINE Alu -137 173 1 2322 104 0 0 chr4 174476977 174477275 -27851072 - AluSx SINE Alu -14 298 1 1108 109 0 7 chr4 174477402 174477549 -27850798 + AluSq/x SINE Alu 1 146 -167 580 189 0 0 chr4 174477669 174477764 -27850583 + FLAM_A SINE Alu 33 127 -15 2441 76 7 0 chr4 174477769 174478070 -27850277 + AluSp SINE Alu 1 303 -10 202 232 43 58 chr4 174478081 174478150 -27850197 - L2 LINE L2 -1304 2010 1943 2198 76 33 40 chr4 174478390 174478691 -27849656 + AluSp SINE Alu 1 299 -14 279 273 88 28 chr4 174478691 174478940 -27849407 + L1MC5 LINE L1 7396 7659 -302 22 35 0 0 chr4 174479273 174479302 -27849045 + AT_rich Low_complexity Low_complexity 1 29 0 209 207 35 35 chr4 174479319 174479435 -27848912 + (TA)n Simple_repeat Simple_repeat 2 117 0 652 200 15 0 chr4 174479724 174479854 -27848493 - FLAM_C SINE Alu 0 133 2 21 0 0 0 chr4 174479865 174479886 -27848461 + AT_rich Low_complexity Low_complexity 1 21 0 2557 50 7 0 chr4 174480335 174480636 -27847711 + AluY SINE Alu 1 303 -8 1655 235 66 22 chr4 174480777 174481274 -27847073 + L1MB7 LINE L1 5546 6064 -120 2022 51 0 43 chr4 174481274 174481388 -27846959 + AluY SINE Alu 2 119 -192 2594 58 3 0 chr4 174481388 174481697 -27846650 + AluSp SINE Alu 1 310 -3 2022 51 0 43 chr4 174481697 174481838 -27846509 + AluY SINE Alu 119 246 -65 1428 91 18 50 chr4 174481951 174482171 -27846176 + AluSg/x SINE Alu 89 301 -11 414 288 111 7 chr4 174482573 174482726 -27845621 + MIR SINE MIR 94 262 0 248 125 25 0 chr4 174482750 174482790 -27845557 + L2 LINE L2 3241 3281 -32 1752 130 20 27 chr4 174483358 174483657 -27844690 - AluJb SINE Alu -15 297 1 2401 78 0 0 chr4 174484013 174484309 -27844038 + AluSx SINE Alu 1 296 -16 518 105 439 0 chr4 174484776 174484890 -27843457 - AluJb SINE Alu -9 303 140 242 259 69 0 chr4 174485119 174485177 -27843170 - L2 LINE L2 -1408 1906 1845 2241 114 0 10 chr4 174485188 174485495 -27842852 - AluSx SINE Alu -8 304 1 2021 134 3 3 chr4 174485685 174486018 -27842329 - AluSx SINE Alu 0 333 1 2941 79 11 57 chr4 174486028 174486435 -27841912 - L1PA8 LINE L1 -1 6171 5787 2334 101 0 0 chr4 174486435 174486741 -27841606 - AluSq SINE Alu -7 306 1 2941 79 11 57 chr4 174486741 174486804 -27841543 - L1PA8 LINE L1 -385 5787 5723 1095 108 0 7 chr4 174486904 174487052 -27841295 - AluSq/x SINE Alu -165 147 1 2148 237 161 65 chr4 174487054 174487420 -27840927 - L2 LINE L2 -280 3033 2704 1990 120 62 3 chr4 174487420 174487712 -27840635 + AluSg SINE Alu 1 309 -1 2148 237 161 65 chr4 174487712 174487732 -27840615 - L2 LINE L2 -609 2704 2687 2225 119 0 6 chr4 174487732 174488043 -27840304 + AluSx SINE Alu 1 309 -3 2148 237 161 65 chr4 174488043 174488591 -27839756 - L2 LINE L2 -626 2687 1962 4114 165 39 64 chr4 174488591 174489581 -27838766 + LTR5 LTR ERVK 1 966 -3 2148 237 161 65 chr4 174489581 174489740 -27838607 - L2 LINE L2 -1351 1962 1820 1372 210 48 75 chr4 174490355 174490501 -27837846 - L1MEc LINE L1 -2925 3501 3353 2519 69 3 0 chr4 174490501 174490805 -27837542 - AluY SINE Alu -6 305 1 1372 210 48 75 chr4 174490805 174491107 -27837240 - L1MEc LINE L1 -3073 3353 3068 2232 109 24 0 chr4 174491107 174491400 -27836947 - AluSp SINE Alu -9 304 5 1372 210 48 75 chr4 174491400 174491513 -27836834 - L1MEc LINE L1 -3358 3068 2954 500 244 0 9 chr4 174491514 174491629 -27836718 - FLAM_C SINE Alu -4 139 26 651 229 83 0 chr4 174491629 174491773 -27836574 - FAM SINE Alu -19 156 1 607 270 61 42 chr4 174491773 174492315 -27836032 - L1MEc LINE L1 -4237 2370 1686 1069 40 0 8 chr4 174492334 174492459 -27835888 + AluY SINE Alu 1 124 -187 243 0 0 0 chr4 174492459 174492486 -27835861 + (CA)n Simple_repeat Simple_repeat 2 28 0 1263 147 5 5 chr4 174492587 174492784 -27835563 + AluSg/x SINE Alu 104 300 -9 2062 112 45 0 chr4 174492921 174493207 -27835140 - AluY SINE Alu -12 299 1 692 272 127 15 chr4 174493266 174494007 -27834340 + HAL1 LINE L1 1550 2398 -109 1987 138 0 43 chr4 174494105 174494431 -27833916 + AluSx SINE Alu 1 312 0 554 258 141 4 chr4 174494439 174494695 -27833652 + L1M4 LINE L1 4177 4467 -1679 2597 55 0 0 chr4 174495209 174495519 -27832828 + AluY SINE Alu 1 310 -1 1901 104 7 44 chr4 174495542 174495839 -27832508 + AluSx SINE Alu 11 296 -16 745 164 0 0 chr4 174495853 174495975 -27832372 - FLAM_C SINE Alu -20 123 2 209 300 62 12 chr4 174497063 174497143 -27831204 - MIR SINE MIR -76 186 103 583 176 209 7 chr4 174497395 174497548 -27830799 + MER5A DNA MER1_type 5 188 -1 893 270 105 53 chr4 174498707 174499326 -27829021 - HAL1 LINE L1 -190 2317 1667 320 236 38 83 chr4 174499388 174499545 -27828802 + L1MCc LINE L1 814 963 -5460 569 246 12 54 chr4 174499573 174499714 -27828633 + L1MCc LINE L1 1117 1251 -5172 1957 161 58 58 chr4 174499714 174500114 -27828233 + MLT1C LTR MaLR 1 403 -64 1976 143 0 38 chr4 174500114 174500428 -27827919 + AluSg SINE Alu 1 302 -8 1957 161 58 58 chr4 174500428 174500494 -27827853 + MLT1C LTR MaLR 402 467 0 569 246 12 54 chr4 174500494 174500519 -27827828 + L1MCc LINE L1 1251 1276 -5147 1922 169 0 0 chr4 174500519 174500809 -27827538 + AluSx SINE Alu 1 290 -22 340 231 140 7 chr4 174501069 174501212 -27827135 + HAL1 LINE L1 2211 2372 -135 568 235 0 23 chr4 174501217 174501349 -27826998 + FLAM_C SINE Alu 3 131 -12 1945 102 0 4 chr4 174501367 174501632 -27826715 + AluSx SINE Alu 1 264 -48 194 0 0 37 chr4 174501662 174501689 -27826658 + (GAAAA)n Simple_repeat Simple_repeat 2 27 0 297 248 78 17 chr4 174503870 174504004 -27824343 + L1MC4 LINE L1 7098 7319 -569 330 247 62 0 chr4 174504013 174504094 -27824253 + L1MC4a LINE L1 7311 7396 -412 420 111 0 0 chr4 174504545 174504608 -27823739 + (TA)n Simple_repeat Simple_repeat 2 64 0 686 194 0 43 chr4 174504616 174504755 -27823592 - FLAM_C SINE Alu 0 133 1 800 237 6 24 chr4 174504769 174504938 -27823409 - AluJo/FRAM SINE Alu 0 302 137 1500 153 3 123 chr4 174504941 174505106 -27823241 - AluJb SINE Alu -8 294 188 1743 144 10 16 chr4 174505106 174505411 -27822936 - AluSq SINE Alu -10 303 1 1500 153 3 123 chr4 174505411 174505579 -27822768 - AluJb SINE Alu -114 188 1 372 312 136 7 chr4 174505697 174505851 -27822496 + L1MC4 LINE L1 7829 8002 -40 307 294 84 8 chr4 174506096 174506215 -27822132 + L1MC4 LINE L1 6576 6703 -1339 * 324 191 0 143 chr4 174506187 174506233 -27822114 - L1MC4 LINE L1 -1339 6703 6679 1531 115 157 0 chr4 174506233 174506494 -27821853 - AluSg1 SINE Alu -3 306 5 324 191 0 143 chr4 174506494 174506552 -27821795 - L1MC4 LINE L1 -1363 6679 6614 2074 100 23 7 chr4 174506626 174506925 -27821422 - AluSq SINE Alu -9 304 1 353 183 17 0 chr4 174507076 174507136 -27821211 - MER77 LTR ERV1 -133 472 412 1268 277 22 16 chr4 174507582 174507950 -27820397 + MLT1A2 LTR MaLR 5 374 0 7491 71 3 2 chr4 174508725 174509693 -27818654 + LTR5 LTR ERVK 1 969 0 1915 140 3 16 chr4 174510199 174510336 -27818011 + AluSq SINE Alu 1 138 -175 2162 102 3 0 chr4 174510336 174510631 -27817716 + AluSp SINE Alu 3 298 -15 1915 140 3 16 chr4 174510631 174510808 -27817539 + AluSq SINE Alu 138 311 -2 1574 147 55 4 chr4 174510812 174511084 -27817263 + AluSx SINE Alu 1 286 -26 1720 123 31 38 chr4 174511231 174511548 -27816799 - L1MA5A LINE L1 -17 6280 5966 9794 26 6 152 chr4 174511551 174513107 -27815240 - SVA Other Other 0 1386 57 192 40 0 0 chr4 174513107 174513132 -27815215 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 636 171 93 0 chr4 174513347 174513476 -27814871 + LTR52 LTR ERVL 3 143 -278 1828 132 35 0 chr4 174513761 174514049 -27814298 + AluSx SINE Alu 1 298 -14 1315 217 57 42 chr4 174514049 174514432 -27813915 + LTR52 LTR ERVL 13 401 -20 1653 153 0 52 chr4 174514576 174514759 -27813588 - AluJb SINE Alu 0 312 155 2458 64 0 10 chr4 174514759 174515070 -27813277 - AluY SINE Alu -3 308 1 1653 153 0 52 chr4 174515070 174515216 -27813131 - AluJb SINE Alu -157 155 3 421 214 102 0 chr4 174515802 174515900 -27812447 + Tigger7 DNA MER2_type 24 131 -2356 966 120 0 0 chr4 174515915 174516048 -27812299 - AluSq/x SINE Alu -179 133 1 1805 213 51 34 chr4 174516058 174516514 -27811833 + Tigger7 DNA MER2_type 128 575 -2012 2046 104 23 13 chr4 174516514 174516823 -27811524 - AluSx SINE Alu 0 312 1 1805 213 51 34 chr4 174516823 174516942 -27811405 + Tigger7 DNA MER2_type 575 2587 0 2049 58 4 40 chr4 174517688 174517988 -27810359 + AluSp SINE Alu 20 309 0 568 237 0 0 chr4 174518058 174518172 -27810175 + FLAM_A SINE Alu 2 115 -18 2072 99 0 3 chr4 174518312 174518618 -27809729 + AluSx SINE Alu 1 305 0 383 320 68 31 chr4 174518622 174518880 -27809467 - L2 LINE L2 -285 3028 2764 2098 58 3 96 chr4 174518990 174519333 -27809014 + AluY SINE Alu 1 311 0 230 71 0 0 chr4 174519654 174519696 -27808651 + Alu SINE Alu 260 301 -2 670 176 24 16 chr4 174519708 174519833 -27808514 + FLAM_C SINE Alu 3 128 -5 313 275 33 0 chr4 174519844 174519935 -27808412 + MIR SINE MIR 45 138 -124 1555 164 3 29 chr4 174520283 174520413 -27807934 + AluSx SINE Alu 4 136 -176 2136 94 7 7 chr4 174520413 174520711 -27807636 + AluSc SINE Alu 1 298 -11 1555 164 3 29 chr4 174520711 174520890 -27807457 + AluSx SINE Alu 136 305 -7 1312 110 10 10 chr4 174521410 174521636 -27806711 + AluSg/x SINE Alu 82 307 0 411 323 31 6 chr4 174521669 174521830 -27806517 + L2 LINE L2 2376 2540 -774 1979 108 27 7 chr4 174522500 174522796 -27805551 + AluSx SINE Alu 1 302 -10 21 57 0 0 chr4 174522836 174522871 -27805476 + AT_rich Low_complexity Low_complexity 1 35 0 195 300 20 30 chr4 174522927 174523027 -27805320 + L2 LINE L2 2150 2248 -1066 308 301 1 23 chr4 174523063 174523163 -27805184 + MIR SINE MIR 52 150 -58 477 108 12 48 chr4 174523385 174523468 -27804879 - FLAM_A SINE Alu -11 131 52 4301 65 6 0 chr4 174523478 174524015 -27804332 - MER41A LTR ERV1 -13 541 2 408 190 9 60 chr4 174524015 174524157 -27804190 - AluJ/FLAM SINE Alu -243 59 1 420 189 78 0 chr4 174524515 174524605 -27803742 + LTR40a LTR ERVL 4 100 -419 233 143 24 0 chr4 174524621 174524663 -27803684 + L1MC1 LINE L1 5892 5934 -410 1646 209 46 8 chr4 174525240 174525633 -27802714 + L1MC1 LINE L1 5925 6332 -1 2422 38 0 0 chr4 174525657 174525950 -27802397 - AluY SINE Alu -18 293 1 532 259 14 28 chr4 174525952 174526095 -27802252 - L1MCa LINE L1 -5958 468 328 790 132 73 7 chr4 174526334 174526470 -27801877 - AluJb SINE Alu -166 146 2 56 48 0 0 chr4 174527340 174527424 -27800923 + AT_rich Low_complexity Low_complexity 1 84 0 225 132 0 0 chr4 174527428 174527466 -27800881 + (TA)n Simple_repeat Simple_repeat 2 39 0 2391 56 0 3 chr4 174528107 174528411 -27799936 + AluY SINE Alu 1 303 -8 32 0 0 0 chr4 174528498 174528530 -27799817 + AT_rich Low_complexity Low_complexity 1 32 0 1436 60 0 11 chr4 174529686 174529868 -27798479 - AluY SINE Alu -131 180 1 1357 158 91 0 chr4 174529869 174530110 -27798237 - MER39 LTR ERV1 -444 263 1 282 148 295 0 chr4 174530112 174530173 -27798174 + MER21B LTR ERV1 18 96 -767 2347 88 3 0 chr4 174530175 174530483 -27797864 + AluSp SINE Alu 1 309 -4 1014 134 0 19 chr4 174530484 174530641 -27797706 + AluSc SINE Alu 140 293 -16 1284 201 52 141 chr4 174530673 174530868 -27797479 + MER21B LTR ERV1 356 567 -296 1969 127 3 23 chr4 174530868 174531175 -27797172 + AluSx SINE Alu 1 301 -11 1284 201 52 141 chr4 174531175 174531229 -27797118 + MER21B LTR ERV1 567 624 -239 2250 65 0 10 chr4 174531229 174531523 -27796824 + AluY SINE Alu 1 291 -20 1284 201 52 141 chr4 174531523 174531774 -27796573 + MER21B LTR ERV1 624 812 -51 480 228 30 132 chr4 174532240 174532355 -27795992 + MIR SINE MIR 76 164 -98 2215 122 0 0 chr4 174532355 174532667 -27795680 - AluSx SINE Alu 0 312 1 480 228 30 132 chr4 174532667 174532748 -27795599 + MIR SINE MIR 164 252 -10 484 139 0 131 chr4 174533037 174533174 -27795173 + FAM SINE Alu 67 185 0 194 189 0 0 chr4 174533405 174533442 -27794905 + MIR SINE MIR 222 258 -4 185 243 262 10 chr4 174533927 174534030 -27794317 - MIR SINE MIR -3 259 131 978 171 1 17 chr4 174536353 174536597 -27791750 + AluJb SINE Alu 85 302 -10 1815 115 29 32 chr4 174536930 174537242 -27791105 + AluSx SINE Alu 1 311 -1 689 187 37 15 chr4 174537401 174537535 -27790812 - AluJo SINE Alu -175 137 1 2290 89 0 6 chr4 174537846 174538160 -27790187 + AluSx SINE Alu 1 312 0 542 224 12 73 chr4 174538265 174538430 -27789917 - MER77 LTR ERV1 -446 159 5 578 161 214 0 chr4 174538476 174538588 -27789759 - AluJo SINE Alu -176 136 1 1241 119 32 55 chr4 174538621 174538840 -27789507 + AluSg/x SINE Alu 83 296 -14 718 157 9 0 chr4 174538847 174538962 -27789385 - FLAM_C SINE Alu -16 117 2 641 119 119 0 chr4 174539778 174539879 -27788468 + AluJo SINE Alu 18 130 -182 2110 104 3 0 chr4 174539917 174540216 -27788131 + AluSc SINE Alu 1 300 -9 764 223 6 6 chr4 174540519 174540685 -27787662 + AluJo SINE Alu 137 302 0 1794 156 0 0 chr4 174541164 174541459 -27786888 - AluJb SINE Alu -15 297 3 257 214 112 77 chr4 174541488 174541684 -27786663 - L1MC5 LINE L1 -53 7908 7706 2551 42 0 0 chr4 174542791 174543101 -27785246 + AluY SINE Alu 1 310 -1 957 172 11 6 chr4 174543192 174543372 -27784975 - AluJo SINE Alu -10 302 122 186 43 0 0 chr4 174543379 174543402 -27784945 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1777 126 41 27 chr4 174543413 174543707 -27784640 - AluSx SINE Alu -14 298 1 2205 97 0 0 chr4 174543711 174544001 -27784346 - AluSq SINE Alu -21 292 3 812 151 0 14 chr4 174544051 174544190 -27784157 - AluJo SINE Alu -175 137 1 201 182 0 0 chr4 174544205 174544238 -27784109 + T-rich Low_complexity Low_complexity 1 33 0 2187 90 0 13 chr4 174544279 174544580 -27783767 - AluSq SINE Alu -16 297 1 1773 116 89 24 chr4 174544671 174544964 -27783383 - AluSx SINE Alu 0 312 1 1566 169 0 24 chr4 174545251 174545546 -27782801 + AluJo SINE Alu 13 300 -12 2306 87 0 0 chr4 174545738 174546036 -27782311 - AluSc SINE Alu -11 298 1 2474 68 0 0 chr4 174546547 174546854 -27781493 - AluY SINE Alu -4 307 1 1176 171 0 5 chr4 174546947 174547163 -27781184 - AluJo SINE Alu -14 298 84 264 231 87 29 chr4 174548072 174548176 -27780171 + L1MC5 LINE L1 7805 7914 -47 1689 145 0 11 chr4 174548209 174548492 -27779855 - AluJb SINE Alu -32 280 1 21 0 0 0 chr4 174548502 174548523 -27779824 + AT_rich Low_complexity Low_complexity 1 21 0 444 202 12 24 chr4 174548825 174548909 -27779438 - MER2 DNA MER2_type -262 83 1 1381 158 27 8 chr4 174548941 174549200 -27779147 - AluJo SINE Alu -3 309 46 1696 108 157 0 chr4 174549438 174549706 -27778641 - AluSp SINE Alu -2 311 2 266 179 89 0 chr4 174549706 174549762 -27778585 + AluJ/FRAM SINE Alu 225 285 -17 1327 189 9 46 chr4 174550751 174551074 -27777273 - AluJb SINE Alu 0 312 2 1380 101 48 40 chr4 174551198 174551315 -27777032 + MER30 DNA MER1_type 1 115 -115 1899 94 15 103 chr4 174551315 174551645 -27776702 + AluSq SINE Alu 1 301 -12 1380 101 48 40 chr4 174551645 174551755 -27776592 + MER30 DNA MER1_type 115 230 0 370 215 23 0 chr4 174551776 174551878 -27776469 - L1MA9 LINE L1 -94 6074 5968 3377 196 30 74 chr4 174552089 174553103 -27775244 - LTR5 LTR ERVK 0 969 1 216 167 0 0 chr4 174553188 174553224 -27775123 + MIR SINE MIR 64 99 -163 2102 121 10 0 chr4 174553225 174553522 -27774825 - AluSq SINE Alu -13 300 1 773 164 0 8 chr4 174553742 174553876 -27774471 - FLAM_C SINE Alu 0 133 1 318 204 0 4 chr4 174553948 174554058 -27774289 + MER8 DNA MER2_type 12 166 -73 2084 122 3 3 chr4 174554297 174554585 -27773762 - AluSx SINE Alu -24 288 1 276 301 142 6 chr4 174554741 174554917 -27773430 - MIR SINE MIR -14 248 49 280 247 0 54 chr4 174555244 174555337 -27773010 + MIR SINE MIR 149 236 -26 1903 141 0 0 chr4 174555685 174555961 -27772386 + AluSx SINE Alu 2 277 -35 309 224 0 56 chr4 174556015 174556122 -27772225 + L1MC5 LINE L1 7481 7581 -380 205 315 65 19 chr4 174556185 174556293 -27772054 - MIR SINE MIR -102 160 48 421 259 111 23 chr4 174556749 174556868 -27771479 - L1MC4 LINE L1 -1 8041 7934 2224 108 7 0 chr4 174556868 174557165 -27771182 - AluSp SINE Alu -14 299 1 421 259 111 23 chr4 174557165 174557261 -27771086 - L1MC4 LINE L1 -108 7934 7807 937 154 0 43 chr4 174557359 174557521 -27770826 - AluSg/x SINE Alu -22 288 134 2317 72 0 16 chr4 174557624 174557929 -27770418 - AluY SINE Alu -3 308 9 1013 161 102 0 chr4 174557961 174558147 -27770200 + Tigger2a DNA MER2_type 2 212 -2496 1773 165 48 3 chr4 174558147 174558438 -27769909 - AluJo SINE Alu -8 304 1 1013 161 102 0 chr4 174558438 174558456 -27769891 + Tigger2a DNA MER2_type 212 227 -207 4337 173 53 21 chr4 174558483 174559320 -27769027 - MER54A LTR ERVL -34 867 5 271 273 36 96 chr4 174559470 174559719 -27768628 + L2 LINE L2 3004 3237 -76 1530 122 131 25 chr4 174559748 174560069 -27768278 + MER46B DNA MER2_type 4 233 -3 305 253 151 7 chr4 174560507 174560653 -27767694 + HAL1 LINE L1 2205 2371 -136 1190 97 0 0 chr4 174562686 174562841 -27765506 + AluSg/x SINE Alu 152 306 -4 7785 72 5 4 chr4 174563101 174564069 -27764278 + LTR5 LTR ERVK 1 969 0 21026 72 13 6 chr4 174564069 174566767 -27761580 + HERVK LTR ERVK 1 2715 -4528 18072 42 10 6 chr4 174566745 174566840 -27761507 + HERVK LTR ERVK 4951 5044 -2199 * 2462 73 13 0 chr4 174566840 174567141 -27761206 + AluSp SINE Alu 1 305 -8 18072 42 10 6 chr4 174567141 174569235 -27759112 + HERVK LTR ERVK 5044 7148 -95 409 84 11 168 chr4 174569235 174569330 -27759017 + SVA Other Other 857 936 -450 8047 58 9 4 chr4 174569330 174570294 -27758053 + LTR5 LTR ERVK 1 969 0 196 137 39 0 chr4 174570816 174570867 -27757480 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 635 168 0 19 chr4 174570867 174570974 -27757373 - FLAM_C SINE Alu -37 106 2 2459 41 7 3 chr4 174572035 174572325 -27756022 + AluY SINE Alu 2 292 -19 28 48 0 0 chr4 174573336 174573378 -27754969 + AT_rich Low_complexity Low_complexity 1 42 0 762 238 186 8 chr4 174575874 174575974 -27752373 - AluSg SINE Alu -7 293 212 353 39 20 0 chr4 174575974 174576025 -27752322 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 2006 111 0 0 chr4 174576025 174576295 -27752052 - AluSx SINE Alu -30 282 13 762 238 186 8 chr4 174576295 174576441 -27751906 - AluSg SINE Alu -87 213 2 2330 92 3 0 chr4 174580134 174580428 -27747919 + AluSq SINE Alu 2 296 -17 2171 126 0 0 chr4 174580900 174581201 -27747146 + AluSx SINE Alu 3 303 -9 2042 106 33 0 chr4 174581204 174581477 -27746870 + AluSx SINE Alu 1 282 -30 2259 93 0 27 chr4 174581478 174581779 -27746568 + AluY SINE Alu 2 294 -17 332 281 12 0 chr4 174581996 174582078 -27746269 - MIR SINE MIR -139 123 41 2380 87 0 0 chr4 174582154 174582442 -27745905 + AluSx SINE Alu 1 288 -24 213 250 0 0 chr4 174582702 174582750 -27745597 + (TTA)n Simple_repeat Simple_repeat 3 50 0 22 35 0 0 chr4 174582861 174582890 -27745457 + AT_rich Low_complexity Low_complexity 1 29 0 2080 70 0 8 chr4 174584132 174584390 -27743957 + AluY SINE Alu 55 310 -1 839 153 15 0 chr4 174585105 174585236 -27743111 + FLAM_C SINE Alu 1 133 0 468 103 0 0 chr4 174585334 174585402 -27742945 - Alu SINE Alu -7 302 235 1986 130 7 7 chr4 174585403 174585704 -27742643 - AluSg SINE Alu -9 301 1 24 0 0 0 chr4 174585847 174585871 -27742476 + AT_rich Low_complexity Low_complexity 1 24 0 1588 111 5 0 chr4 174586076 174586283 -27742064 + AluSx SINE Alu 9 216 -96 397 140 11 28 chr4 174586414 174586498 -27741849 + L1MA9 LINE L1 6097 6184 -5 2265 119 3 0 chr4 174586798 174587109 -27741238 - AluSx SINE Alu 0 312 1 216 288 91 0 chr4 174587469 174587535 -27740812 + L2 LINE L2 3201 3272 0 785 272 50 8 chr4 174587662 174587901 -27740446 + MIR SINE MIR 14 262 0 632 161 13 97 chr4 174587915 174588070 -27740277 - FLAM_C SINE Alu 0 143 2 1075 197 47 100 chr4 174588147 174588446 -27739901 + MLT1A1 LTR MaLR 83 365 0 1812 175 59 89 chr4 174588690 174589209 -27739138 + MLT2B3 LTR ERVL 1 546 -8 2213 133 10 0 chr4 174589290 174589599 -27738748 - AluSx SINE Alu 0 312 1 198 0 0 0 chr4 174589608 174589630 -27738717 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 1800 153 0 24 chr4 174589633 174589921 -27738426 - AluJb SINE Alu -31 281 1 3284 209 91 42 chr4 174590120 174590390 -27737957 - L1MEc LINE L1 -5339 1057 802 2460 88 3 0 chr4 174590390 174590698 -27737649 - AluY SINE Alu -2 309 1 3284 209 91 42 chr4 174590698 174591401 -27736946 - L1MEc LINE L1 -5594 802 36 2183 108 0 10 chr4 174591627 174591942 -27736405 - AluSq SINE Alu 0 312 1 2142 96 53 0 chr4 174592715 174592997 -27735350 + AluSp SINE Alu 1 297 -16 286 174 58 35 chr4 174593108 174593194 -27735153 + LTR67 LTR ERVL 470 557 0 2084 92 20 24 chr4 174593366 174593661 -27734686 - AluSq SINE Alu -9 304 11 198 0 0 0 chr4 174594359 174594381 -27733966 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 693 199 7 20 chr4 174595605 174595756 -27732591 - FRAM SINE Alu -14 152 4 1812 99 76 0 chr4 174595935 174596197 -27732150 - AluSx SINE Alu -30 282 1 433 162 0 0 chr4 174596322 174596396 -27731951 - FLAM_C SINE Alu 0 143 70 640 264 69 55 chr4 174596453 174596593 -27731754 - L1MC4 LINE L1 -1 8041 7905 2428 56 7 13 chr4 174596593 174596898 -27731449 - AluY SINE Alu -8 303 1 640 264 69 55 chr4 174596898 174597105 -27731242 - L1MC4 LINE L1 -137 7905 7689 713 191 0 0 chr4 174597111 174597256 -27731091 - FLAM_A SINE Alu 0 145 1 1529 202 0 23 chr4 174597338 174597645 -27730702 - AluJo SINE Alu -12 300 1 208 303 91 10 chr4 174597666 174597765 -27730582 + MIR SINE MIR 6 112 -150 844 245 0 5 chr4 174597773 174597965 -27730382 + AluJo SINE Alu 1 191 -121 2183 113 0 0 chr4 174597992 174598309 -27730038 - AluSq SINE Alu 0 317 1 773 159 56 0 chr4 174598448 174598574 -27729773 - FLAM_C SINE Alu 0 133 1 23 0 0 0 chr4 174598579 174598602 -27729745 + AT_rich Low_complexity Low_complexity 1 23 0 1798 113 70 0 chr4 174598813 174599069 -27729278 + AluSx SINE Alu 1 274 -38 1513 148 0 0 chr4 174599099 174599322 -27729025 + AluSg/x SINE Alu 82 304 -6 369 188 146 21 chr4 174599322 174599418 -27728929 + MER39 LTR ERV1 13 120 -587 1120 47 0 0 chr4 174599507 174599655 -27728692 + AluSg/x SINE Alu 155 302 0 431 85 0 0 chr4 174599656 174599715 -27728632 + MER39 LTR ERV1 609 667 -40 890 147 0 15 chr4 174600027 174600163 -27728184 - AluJo SINE Alu -178 134 1 690 184 0 0 chr4 174600167 174600303 -27728044 - L1MA7 LINE L1 -1 6290 6155 1853 136 21 7 chr4 174601574 174601875 -27726472 - AluSx SINE Alu 0 305 1 2450 100 3 0 chr4 174601957 174602268 -27726079 - AluSx SINE Alu 0 312 1 1078 138 15 26 chr4 174602314 174602509 -27725838 + AluJo SINE Alu 120 312 0 237 285 95 23 chr4 174602687 174602908 -27725439 + L1MC4a LINE L1 5716 5952 -1856 470 172 9 189 chr4 174602960 174603105 -27725242 + L1 LINE L1 4134 4225 -1921 1779 174 3 31 chr4 174603105 174603426 -27724921 + AluSx SINE Alu 1 312 0 470 172 9 189 chr4 174603426 174603507 -27724840 + L1 LINE L1 4225 4319 -1827 * 1380 198 25 129 chr4 174603501 174603705 -27724642 + L1 LINE L1 4703 4927 -1219 2128 133 6 16 chr4 174603705 174604020 -27724327 + AluSx SINE Alu 1 312 0 1380 198 25 129 chr4 174604020 174604326 -27724021 + L1 LINE L1 4927 5160 -986 1403 153 26 109 chr4 174604326 174604639 -27723708 + AluJo SINE Alu 1 287 -25 37 39 0 0 chr4 174604644 174604695 -27723652 + AT_rich Low_complexity Low_complexity 1 51 0 1957 128 7 0 chr4 174604769 174605042 -27723305 + AluSx SINE Alu 1 275 -37 24 0 0 0 chr4 174605314 174605338 -27723009 + AT_rich Low_complexity Low_complexity 1 24 0 261 180 0 0 chr4 174605496 174605546 -27722801 + (TA)n Simple_repeat Simple_repeat 1 50 0 1384 197 143 4 chr4 174605546 174605805 -27722542 - AluJb SINE Alu -7 295 1 22 35 0 0 chr4 174606138 174606167 -27722180 + AT_rich Low_complexity Low_complexity 1 29 0 198 71 0 0 chr4 174606205 174606233 -27722114 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 2071 142 0 7 chr4 174606276 174606571 -27721776 - AluSx SINE Alu -19 293 1 2412 91 2 98 chr4 174606861 174607257 -27721090 + HERVL-B3 LTR ERVL 4768 5125 -529 4328 131 102 66 chr4 174607257 174608768 -27719579 - pTR5 LTR ERV1 0 2438 65 3742 100 7 40 chr4 174608768 174609016 -27719331 + HERVL-B3 LTR ERVL 5122 5377 -277 2091 117 3 0 chr4 174609016 174609306 -27719041 - AluSp SINE Alu -22 291 1 3742 100 7 40 chr4 174609306 174609608 -27718739 + HERVL-B3 LTR ERVL 5377 5654 0 2113 217 34 62 chr4 174609608 174610175 -27718172 + MLT2B3 LTR ERVL 1 551 -3 2142 123 3 0 chr4 174610212 174610505 -27717842 + AluSq SINE Alu 1 294 -19 1573 197 3 11 chr4 174610921 174611205 -27717142 + AluJo SINE Alu 1 282 -30 683 174 0 114 chr4 174611820 174611969 -27716378 + FLAM_C SINE Alu 2 133 0 356 194 274 0 chr4 174612166 174612287 -27716060 + MIR SINE MIR 36 189 -65 1410 188 45 39 chr4 174613015 174613323 -27715024 - AluJo SINE Alu -2 310 1 2098 124 3 3 chr4 174614307 174614605 -27713742 + AluSx SINE Alu 9 306 -6 1325 215 41 0 chr4 174615742 174616012 -27712335 - MLT1B LTR MaLR 0 390 110 1956 145 0 32 chr4 174616012 174616322 -27712025 - AluSx SINE Alu -10 302 3 414 237 178 8 chr4 174616338 174616456 -27711891 - MIR SINE MIR -91 171 34 715 294 103 42 chr4 174616559 174616669 -27711678 - L2 LINE L2 -455 2859 2757 180 0 0 0 chr4 174616669 174616689 -27711658 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2085 138 0 7 chr4 174616693 174616991 -27711356 - AluSx SINE Alu -16 296 1 715 294 103 42 chr4 174616991 174617500 -27710847 - L2 LINE L2 -559 2755 2183 2247 106 3 7 chr4 174617500 174617801 -27710546 + AluSq SINE Alu 1 300 -13 715 294 103 42 chr4 174617801 174617894 -27710453 - L2 LINE L2 -1131 2183 2097 853 145 7 22 chr4 174617895 174618033 -27710314 + AluJo SINE Alu 1 136 -176 548 281 131 34 chr4 174618084 174618411 -27709936 - L2 LINE L2 -1265 2049 1667 2101 114 41 0 chr4 174618411 174618701 -27709646 + AluSq SINE Alu 1 302 -11 548 281 131 34 chr4 174618701 174618815 -27709532 - L2 LINE L2 -1647 1667 1565 398 178 168 0 chr4 174619055 174619162 -27709185 + MLT1H LTR MaLR 421 545 -4 1629 239 79 99 chr4 174619264 174619890 -27708457 + L1ME LINE L1 36 644 -5426 1985 158 0 3 chr4 174619890 174620194 -27708153 - AluSx SINE Alu -9 303 1 1629 239 79 99 chr4 174620194 174620361 -27707986 + L1ME LINE L1 644 813 -5257 359 316 69 46 chr4 174620629 174620803 -27707544 + MIR SINE MIR 26 203 -59 1944 154 3 3 chr4 174621105 174621398 -27706949 + AluSx SINE Alu 1 293 -19 2081 116 13 20 chr4 174621632 174621933 -27706414 + AluSx SINE Alu 1 299 -13 1987 145 0 16 chr4 174622012 174622315 -27706032 + AluSx SINE Alu 2 299 -13 793 191 0 0 chr4 174622452 174622583 -27705764 - FLAM_C SINE Alu -2 131 1 209 176 39 0 chr4 174622841 174622892 -27705455 + A-rich Low_complexity Low_complexity 2 54 0 1177 278 75 77 chr4 174622910 174623161 -27705186 + L2 LINE L2 2279 2529 -785 2212 114 3 0 chr4 174623161 174623460 -27704887 + AluSx SINE Alu 3 302 -10 1177 278 75 77 chr4 174623460 174623586 -27704761 + L2 LINE L2 2529 2654 -660 1901 127 44 0 chr4 174623586 174623861 -27704486 - AluSg SINE Alu -18 292 6 1177 278 75 77 chr4 174623861 174624001 -27704346 + L2 LINE L2 2654 2796 -518 553 203 42 28 chr4 174624298 174624441 -27703906 + MIR SINE MIR 118 262 0 2232 98 6 16 chr4 174624607 174624922 -27703425 - AluSx SINE Alu 0 312 1 303 49 0 0 chr4 174625678 174625719 -27702628 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 2230 94 4 0 chr4 174625724 174626000 -27702347 - AluSp SINE Alu -36 277 1 436 133 48 133 chr4 174626254 174626419 -27701928 - L1MB7 LINE L1 0 6184 6034 396 0 0 0 chr4 174626872 174626916 -27701431 + (GA)n Simple_repeat Simple_repeat 1 44 0 2008 142 0 10 chr4 174627884 174628187 -27700160 + AluSx SINE Alu 2 301 -11 598 301 95 20 chr4 174628201 174628444 -27699903 - MIR SINE MIR 0 262 3 2288 112 0 0 chr4 174628770 174629074 -27699273 - AluSq SINE Alu -9 304 1 655 214 8 8 chr4 174629085 174629216 -27699131 - FLAM_A SINE Alu -2 131 1 207 0 0 0 chr4 174629218 174629241 -27699106 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2163 40 44 7 chr4 174629241 174629514 -27698833 - AluY SINE Alu -28 283 1 186 377 0 0 chr4 174629541 174629610 -27698737 + L2 LINE L2 3199 3267 -5 7142 81 12 2 chr4 174629712 174630884 -27697463 - L1PA13 LINE L1 -2 6161 4986 3566 170 8 35 chr4 174630884 174631106 -27697241 - L1P LINE L1 -978 5168 4942 1704 21 0 11 chr4 174631106 174631297 -27697050 - L1PA4 LINE L1 0 6155 5967 3566 170 8 35 chr4 174631297 174631791 -27696556 - L1P LINE L1 -1204 4942 4471 206 289 0 0 chr4 174631997 174632042 -27696305 + polypyrimidine Low_complexity Low_complexity 4 48 0 1814 145 11 0 chr4 174632199 174632482 -27695865 - AluJo SINE Alu -26 286 1 2298 108 0 3 chr4 174632496 174632803 -27695544 - AluSx SINE Alu -5 307 2 2258 96 0 16 chr4 174633396 174633710 -27694637 - AluSx SINE Alu -3 309 1 345 273 92 14 chr4 174634170 174634337 -27694010 + MIR SINE MIR 36 212 -50 2203 90 0 53 chr4 174634446 174634768 -27693579 - AluSg SINE Alu -5 305 1 21 0 0 0 chr4 174635578 174635599 -27692748 + AT_rich Low_complexity Low_complexity 1 21 0 285 267 204 23 chr4 174635647 174635819 -27692528 - L1MC/D LINE L1 -1992 5816 5614 202 216 0 0 chr4 174635823 174635860 -27692487 + L2 LINE L2 3187 3223 -90 1728 118 0 0 chr4 174635878 174636106 -27692241 + AluSq SINE Alu 1 228 -85 27 62 0 0 chr4 174636120 174636168 -27692179 + AT_rich Low_complexity Low_complexity 1 48 0 342 259 37 44 chr4 174637421 174637556 -27690791 + L1MC4 LINE L1 6784 6917 -1125 423 143 39 13 chr4 174637683 174637753 -27690594 + MER84 LTR ERVI 3 74 -433 2770 128 14 80 chr4 174637753 174637797 -27690550 + MER84 LTR ERVI 2 47 -460 1832 126 54 0 chr4 174637797 174638075 -27690272 + AluSg SINE Alu 1 293 -17 2770 128 14 80 chr4 174638075 174638137 -27690210 + MER84 LTR ERVI 47 112 -395 2318 94 0 0 chr4 174638137 174638443 -27689904 - AluSq SINE Alu 0 306 1 2770 128 14 80 chr4 174638443 174638844 -27689503 + MER84 LTR ERVI 112 477 -30 3459 225 10 4 chr4 174638936 174639750 -27688597 + L1 LINE L1 4399 5217 -929 281 309 163 17 chr4 174639859 174640037 -27688310 + L2 LINE L2 2498 2701 -613 2141 68 32 7 chr4 174640081 174640360 -27687987 - AluSx SINE Alu -26 286 1 2475 56 0 16 chr4 174640480 174640785 -27687562 - AluSp SINE Alu -13 300 1 384 229 154 43 chr4 174640806 174640994 -27687353 + L2 LINE L2 2669 2877 -437 804 185 53 0 chr4 174641026 174641177 -27687170 - MER5A DNA MER1_type -28 161 3 421 283 251 3 chr4 174641177 174641526 -27686821 + L2 LINE L2 2875 3310 -3 24 53 0 0 chr4 174641869 174641907 -27686440 + GC_rich Low_complexity Low_complexity 1 38 0 249 119 0 0 chr4 174641909 174641951 -27686396 + (CAG)n Simple_repeat Simple_repeat 1 42 0 366 309 112 76 chr4 174641961 174642463 -27685884 - L1M2 LINE L1 -5841 1008 489 21 57 0 0 chr4 174643085 174643120 -27685227 + AT_rich Low_complexity Low_complexity 1 35 0 229 159 63 63 chr4 174644631 174644694 -27683653 - L2 LINE L2 0 3272 3210 198 370 22 0 chr4 174645472 174645564 -27682783 + L3 LINE CR1 1439 1532 -45 439 238 377 4 chr4 174646568 174646833 -27681514 - L2 LINE L2 -17 3296 2933 224 268 203 16 chr4 174647075 174647198 -27681149 - MIR SINE MIR -66 196 51 286 363 132 9 chr4 174647382 174647715 -27680632 + L2 LINE L2 2295 2668 -646 291 349 28 0 chr4 174648451 174648560 -27679787 - MIR SINE MIR -75 133 22 21 57 0 0 chr4 174649238 174649273 -27679074 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 174650268 174650291 -27678056 + AT_rich Low_complexity Low_complexity 1 23 0 1881 281 125 33 chr4 174652153 174653181 -27675166 + L2 LINE L2 2192 3313 0 453 171 9 29 chr4 174653344 174653449 -27674898 - L1MB8 LINE L1 0 6178 6076 437 206 9 0 chr4 174653352 174653459 -27674888 - L1MB8 LINE L1 -5 6173 6066 577 293 149 0 chr4 174653648 174653863 -27674484 + MIR SINE MIR 11 257 -5 667 129 80 154 chr4 174654717 174654873 -27673474 + MER33 DNA MER1_type 60 187 -2398 795 161 0 0 chr4 174654873 174654991 -27673356 + FLAM_C SINE Alu 1 118 -15 667 129 80 154 chr4 174654991 174655120 -27673227 + MER33 DNA MER1_type 187 324 0 443 273 101 64 chr4 174655572 174656142 -27672205 - L2 LINE L2 -52 3220 2650 316 284 126 0 chr4 174656624 174656719 -27671628 + MIR3 SINE MIR 87 193 -15 1546 127 9 5 chr4 174658348 174658568 -27669779 - AluSg/x SINE Alu -9 301 81 26 0 0 0 chr4 174658649 174658675 -27669672 + AT_rich Low_complexity Low_complexity 1 26 0 1034 142 0 0 chr4 174659181 174659357 -27668990 - L1MA2 LINE L1 -40 6264 6089 253 328 74 86 chr4 174659600 174659856 -27668491 + L2 LINE L2 2980 3232 -40 252 342 98 14 chr4 174660653 174660928 -27667419 + L2 LINE L2 2805 3102 -170 34 0 0 0 chr4 174661159 174661193 -27667154 + AT_rich Low_complexity Low_complexity 1 34 0 546 181 214 28 chr4 174661251 174661433 -27666914 + MIR SINE MIR 9 224 -38 1963 156 0 13 chr4 174662335 174662636 -27665711 - AluSx SINE Alu -15 297 1 670 203 62 47 chr4 174664726 174664918 -27663429 + MIR SINE MIR 68 262 0 426 166 7 110 chr4 174665550 174665606 -27662741 - L1MB8 LINE L1 0 6178 6118 1540 181 54 4 chr4 174665606 174665883 -27662464 + AluJb SINE Alu 1 291 -21 426 166 7 110 chr4 174665883 174665971 -27662376 - L1MB8 LINE L1 -60 6118 6049 2059 172 39 30 chr4 174665979 174666473 -27661874 - L1ME1 LINE L1 -298 5868 5371 2173 70 0 15 chr4 174666610 174666883 -27661464 + AluY SINE Alu 35 303 -8 1679 153 6 50 chr4 174666883 174667203 -27661144 + AluJo SINE Alu 1 306 -6 225 0 0 0 chr4 174667313 174667338 -27661009 + (T)n Simple_repeat Simple_repeat 1 25 0 543 230 77 56 chr4 174668038 174668234 -27660113 - L2 LINE L2 -1 3312 3113 1193 80 7 0 chr4 174669048 174669199 -27659148 - AluSc SINE Alu -9 300 149 888 201 7 7 chr4 174669288 174669442 -27658905 + FRAM SINE Alu 2 155 -11 275 83 0 21 chr4 174669602 174669650 -27658697 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1980 148 0 0 chr4 174669652 174669935 -27658412 - AluSx SINE Alu -29 283 1 327 324 190 51 chr4 174669986 174670396 -27657951 - L2 LINE L2 0 3272 2806 201 372 90 18 chr4 174670449 174670672 -27657675 - L2 LINE L2 -654 2660 2422 782 176 0 22 chr4 174670814 174670950 -27657397 - FLAM_A SINE Alu 0 133 1 1636 175 13 22 chr4 174673684 174673999 -27654348 - AluJb SINE Alu 0 312 1 336 276 97 22 chr4 174674436 174674621 -27653726 - L1ME LINE L1 -391 5730 5532 2011 149 3 19 chr4 174676913 174677229 -27651118 - AluSx SINE Alu -1 311 1 23 0 0 0 chr4 174677247 174677270 -27651077 + AT_rich Low_complexity Low_complexity 1 23 0 207 171 0 0 chr4 174677270 174677305 -27651042 + (TG)n Simple_repeat Simple_repeat 1 35 0 341 298 121 0 chr4 174677336 174677460 -27650887 - MIR SINE MIR -44 218 80 243 0 0 0 chr4 174679063 174679090 -27649257 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 291 261 0 0 chr4 174679135 174679200 -27649147 + MIR SINE MIR 48 112 -150 2089 133 0 13 chr4 174679354 174679662 -27648685 + AluSx SINE Alu 1 304 -8 2268 275 119 87 chr4 174680339 174681562 -27646785 - L2 LINE L2 -2 3270 1835 407 234 27 9 chr4 174681562 174681673 -27646674 - MER94 DNA DNA -20 114 2 2268 275 119 87 chr4 174681673 174682367 -27645980 - L2 LINE L2 -1437 1835 1164 317 199 29 155 chr4 174682393 174682551 -27645796 - MLT1H LTR MaLR 0 549 417 326 263 177 17 chr4 174682557 174682732 -27645615 - L2 LINE L2 -2486 828 626 244 274 49 0 chr4 174683020 174683122 -27645225 - MER112 DNA MER1_type -9 251 145 2544 51 0 0 chr4 174684275 174684570 -27643777 + AluY SINE Alu 1 295 -16 219 351 106 0 chr4 174684959 174685053 -27643294 + MIR SINE MIR 50 153 -109 28 79 0 0 chr4 174685878 174685941 -27642406 + AT_rich Low_complexity Low_complexity 1 63 0 2759 7 3 0 chr4 174686035 174686340 -27642007 - AluYa5 SINE Alu -5 306 1 536 97 0 0 chr4 174687011 174687083 -27641264 + U4 snRNA snRNA 1 72 -73 1459 162 25 64 chr4 174687322 174687460 -27640887 + MER2 DNA MER2_type 1 143 -202 2263 102 3 10 chr4 174687460 174687765 -27640582 - AluSx SINE Alu -9 303 1 1459 162 25 64 chr4 174687765 174687953 -27640394 + MER2 DNA MER2_type 143 314 -31 1271 198 90 14 chr4 174687985 174688339 -27640008 - L1ME2 LINE L1 -11 6153 5773 324 313 43 4 chr4 174688723 174688956 -27639391 - L1ME LINE L1 -299 5822 5581 416 278 68 30 chr4 174691160 174691527 -27636820 - L1ME4a LINE L1 -50 6071 5691 334 329 43 19 chr4 174692192 174692353 -27635994 - L2 LINE L2 -44 3269 3105 310 199 27 113 chr4 174693310 174693496 -27634851 + MER113 DNA MER1_type? 1 170 -351 2107 128 3 20 chr4 174693533 174693839 -27634508 - AluSx SINE Alu -11 301 1 359 243 257 0 chr4 174693933 174694085 -27634262 + MIR SINE MIR 60 250 -12 366 284 58 21 chr4 174694215 174694372 -27633975 + MIR3 SINE MIR 21 183 -25 194 274 0 0 chr4 174694845 174694896 -27633451 + MIR3 SINE MIR 155 205 -3 857 228 130 30 chr4 174695049 174695387 -27632960 - L1MC4a LINE L1 -1926 5882 5511 2189 120 7 0 chr4 174695758 174696067 -27632280 - AluSx SINE Alu -1 311 1 1979 164 0 0 chr4 174696996 174697307 -27631040 - AluJo SINE Alu -1 311 1 24 0 0 0 chr4 174697467 174697491 -27630856 + AT_rich Low_complexity Low_complexity 1 24 0 659 125 10 0 chr4 174698029 174698133 -27630214 - AluSg/x SINE Alu -9 301 197 207 0 0 0 chr4 174698234 174698257 -27630090 + (T)n Simple_repeat Simple_repeat 1 23 0 2542 109 0 5 chr4 174698649 174699024 -27629323 - L1PB3 LINE L1 0 6154 5782 233 296 0 0 chr4 174699060 174699148 -27629199 + L1MC4 LINE L1 6615 6702 -1340 294 29 0 0 chr4 174699149 174699184 -27629163 + (TA)n Simple_repeat Simple_repeat 2 36 0 3254 136 28 5 chr4 174699184 174700000 -27628347 - L1P5 LINE L1 -363 5791 4957 4624 50 8 1 chr4 174700036 174700745 -27627602 - L1PA6 LINE L1 -285 5869 5157 635 244 19 19 chr4 174750745 174750901 -27577446 - MIR SINE MIR -94 168 13 351 316 58 22 chr4 174751750 174751889 -27576458 + MIR SINE MIR 6 149 -113 407 328 116 4 chr4 174754020 174754252 -27574095 + MIR SINE MIR 5 262 0 495 274 170 14 chr4 174754423 174754635 -27573712 - MIR SINE MIR 0 262 18 439 287 89 15 chr4 174754655 174754857 -27573490 - LTR16A LTR ERVL -111 339 123 2984 104 69 2 chr4 174754929 174755408 -27572939 - LTR26 LTR ERV1 -3 600 90 2059 146 10 0 chr4 174755999 174756308 -27572039 - AluSx SINE Alu 0 312 1 261 163 0 0 chr4 174756691 174756740 -27571607 + CT-rich Low_complexity Low_complexity 1 49 0 1027 105 0 0 chr4 174756740 174756873 -27571474 - AluSg/x SINE Alu -24 286 154 630 0 0 0 chr4 174756877 174756947 -27571400 + (TTCCC)n Simple_repeat Simple_repeat 3 72 0 657 333 18 72 chr4 174757300 174757757 -27570590 - L2 LINE L2 0 3272 2841 1951 116 22 4 chr4 174757982 174758286 -27570061 - AluSx SINE Alu 0 309 1 3310 160 37 8 chr4 174758804 174759392 -27568955 - MER6A DNA MER2_type 0 605 1 234 250 0 0 chr4 174759654 174759710 -27568637 + L2 LINE L2 3217 3272 0 217 398 0 0 chr4 174759755 174759843 -27568504 + MIR SINE MIR 58 145 -117 247 233 0 17 chr4 174760037 174760097 -27568250 - L2 LINE L2 0 3313 3255 1034 308 83 14 chr4 174760251 174760683 -27567664 - L2 LINE L2 -474 2840 2379 180 0 0 0 chr4 174760688 174760708 -27567639 + (T)n Simple_repeat Simple_repeat 1 20 0 937 172 0 0 chr4 174761228 174761379 -27566968 + AluJo SINE Alu 1 151 -161 24 32 0 0 chr4 174761682 174761713 -27566634 + AT_rich Low_complexity Low_complexity 1 31 0 194 178 9 56 chr4 174762490 174762597 -27565750 + (TA)n Simple_repeat Simple_repeat 1 102 0 596 336 82 20 chr4 174763306 174763660 -27564687 + L2 LINE L2 2890 3265 -7 355 306 104 0 chr4 174764143 174764277 -27564070 - MIR SINE MIR -54 208 61 294 215 31 15 chr4 174764556 174764621 -27563726 + L2 LINE L2 3245 3310 -3 25 31 0 0 chr4 174765662 174765694 -27562653 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr4 174766119 174766146 -27562201 + AT_rich Low_complexity Low_complexity 1 27 0 443 294 42 34 chr4 174766230 174766413 -27561934 - MIR SINE MIR -47 215 32 274 256 41 25 chr4 174768714 174768835 -27559512 - MER103 DNA DNA -8 158 36 39 22 0 0 chr4 174769041 174769087 -27559260 + AT_rich Low_complexity Low_complexity 1 46 0 1449 115 16 23 chr4 174769244 174769432 -27558915 - MER4A LTR ERV1 -4 660 472 2489 70 0 0 chr4 174769432 174769734 -27558613 + AluY SINE Alu 1 302 -9 1449 115 16 23 chr4 174769734 174770062 -27558285 - MER4A LTR ERV1 -192 472 23 242 219 27 27 chr4 174771327 174771400 -27556947 + GA-rich Low_complexity Low_complexity 3 75 0 255 31 0 0 chr4 174771867 174771899 -27556448 + (CA)n Simple_repeat Simple_repeat 1 32 0 22 35 0 0 chr4 174771939 174771968 -27556379 + AT_rich Low_complexity Low_complexity 1 29 0 2155 98 24 3 chr4 174772461 174772756 -27555591 - AluSx SINE Alu -11 301 1 1918 131 4 0 chr4 174773223 174773497 -27554850 + AluSx SINE Alu 5 279 -33 1156 139 16 5 chr4 174773941 174774128 -27554219 + MER5A DNA MER1_type 1 189 0 239 346 53 53 chr4 174774128 174774261 -27554086 + MIR SINE MIR 9 141 -121 4263 150 56 38 chr4 174774302 174774743 -27553604 + L1MB8 LINE L1 4891 5323 -855 811 192 192 79 chr4 174774743 174774866 -27553481 + AluJo SINE Alu 3 111 -191 2276 93 3 29 chr4 174774866 174775176 -27553171 + AluSx SINE Alu 1 302 -10 811 192 192 79 chr4 174775176 174775318 -27553029 + AluJo SINE Alu 111 298 -4 4263 150 56 38 chr4 174775318 174776136 -27552211 + L1MB8 LINE L1 5323 6169 -9 26 0 0 0 chr4 174776172 174776198 -27552149 + AT_rich Low_complexity Low_complexity 1 26 0 221 276 69 0 chr4 174779196 174779254 -27549093 - MIR3 SINE MIR -14 194 133 23 33 0 0 chr4 174779776 174779806 -27548541 + AT_rich Low_complexity Low_complexity 1 30 0 2045 159 115 3 chr4 174779933 174780316 -27548031 - MSTB LTR MaLR 0 426 1 24 32 0 0 chr4 174780602 174780633 -27547714 + AT_rich Low_complexity Low_complexity 1 31 0 514 318 93 13 chr4 174781092 174781328 -27547019 - MIR SINE MIR 0 262 8 400 305 121 62 chr4 174781341 174781712 -27546635 - L2 LINE L2 -1002 2312 1920 415 185 130 0 chr4 174781739 174781847 -27546500 + MER94 DNA DNA 13 134 0 283 70 0 0 chr4 174781973 174782016 -27546331 + HY3 scRNA scRNA 59 101 0 207 264 104 40 chr4 174782306 174782431 -27545916 - MIR SINE MIR -11 251 119 1757 163 34 3 chr4 174782788 174783082 -27545265 - AluJo SINE Alu -9 303 1 23 0 0 0 chr4 174783148 174783171 -27545176 + AT_rich Low_complexity Low_complexity 1 23 0 2267 77 0 32 chr4 174783323 174783634 -27544713 - AluSg SINE Alu -9 301 1 296 240 82 10 chr4 174784235 174784333 -27544014 + MIR SINE MIR 104 207 -55 208 313 75 25 chr4 174784786 174784866 -27543481 - MIR SINE MIR -105 103 20 * 267 259 82 24 chr4 174784849 174784934 -27543413 + L2 LINE L2 3219 3308 -5 2268 101 0 0 chr4 174785619 174785915 -27542432 - AluY SINE Alu -15 296 1 315 338 12 0 chr4 174785923 174786003 -27542344 + L3 LINE CR1 33 113 -1464 321 308 54 91 chr4 174786036 174786367 -27541980 - HAL1 LINE L1 -1809 698 380 517 317 233 28 chr4 174786591 174787058 -27541289 + L3 LINE CR1 588 1150 -427 1849 195 0 0 chr4 174787069 174787372 -27540975 - AluSx SINE Alu -8 304 2 316 146 0 18 chr4 174787492 174787547 -27540800 - MER3 DNA MER1_type -155 54 1 383 298 33 22 chr4 174787551 174787732 -27540615 + L3 LINE CR1 1215 1397 -180 1863 156 16 13 chr4 174787836 174788143 -27540204 - AluSx SINE Alu -4 308 1 745 102 8 31 chr4 174788153 174788281 -27540066 - L1MA5 LINE L1 -6 6294 6170 1561 168 3 89 chr4 174788315 174788630 -27539717 - AluJo SINE Alu -24 288 1 1868 129 31 39 chr4 174788754 174789060 -27539287 - AluSx SINE Alu 0 304 1 4703 112 25 8 chr4 174789060 174790375 -27537972 - L1PBa LINE L1 -4752 2111 625 1107 138 15 0 chr4 174790367 174790562 -27537785 - L1PBa LINE L1 -6663 200 3 * 4049 173 51 44 chr4 174790580 174791451 -27536896 + L1MB8 LINE L1 4404 5268 -910 2334 62 0 10 chr4 174791451 174791758 -27536589 + L1PA8 LINE L1 5869 6172 0 4049 173 51 44 chr4 174791758 174791800 -27536547 + L1MB8 LINE L1 5268 5308 -870 2188 108 7 3 chr4 174791800 174792095 -27536252 + AluSg SINE Alu 1 296 -14 4049 173 51 44 chr4 174792095 174792500 -27535847 + L1MB8 LINE L1 5308 5709 -469 2299 128 6 6 chr4 174792500 174792837 -27535510 - MER1B DNA MER1_type 0 337 1 4049 173 51 44 chr4 174792837 174793272 -27535075 + L1MB8 LINE L1 5709 6178 0 1958 155 51 96 chr4 174793295 174793489 -27534858 - MLT1C LTR MaLR 0 467 266 2279 116 0 0 chr4 174793489 174793791 -27534556 - AluSq SINE Alu -11 302 1 1958 155 51 96 chr4 174793791 174794085 -27534262 - MLT1C LTR MaLR -201 266 1 294 279 45 81 chr4 174794499 174794610 -27533737 + MIR SINE MIR 47 153 -109 255 114 0 0 chr4 174795213 174795257 -27533090 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 2677 13 6 0 chr4 174795257 174795574 -27532773 - L1PA3 LINE L1 -24 6131 5813 24 32 0 0 chr4 174796025 174796056 -27532291 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 174796095 174796116 -27532231 + AT_rich Low_complexity Low_complexity 1 21 0 2492 44 0 3 chr4 174796125 174796422 -27531925 - AluY SINE Alu -15 296 1 1867 158 7 17 chr4 174796468 174796765 -27531582 - AluSx SINE Alu -17 295 2 915 148 22 118 chr4 174797298 174797527 -27530820 + MER20 DNA MER1_type 2 208 -11 229 236 0 18 chr4 174798061 174798116 -27530231 + MER5A DNA MER1_type 124 177 -12 3807 105 30 23 chr4 174798342 174798903 -27529444 - MER61E LTR ERV1 -4 565 1 264 189 0 0 chr4 174799065 174799118 -27529229 - L1ME LINE L1 -307 5814 5762 1330 167 52 99 chr4 174799609 174799933 -27528414 - AluJo SINE Alu -3 309 1 1953 208 68 23 chr4 174800105 174800587 -27527760 - MLT1D LTR MaLR -1 504 1 508 233 27 41 chr4 174800633 174800779 -27527568 - MLT1H LTR MaLR 0 549 399 1953 151 3 0 chr4 174801010 174801302 -27527045 + AluJb SINE Alu 2 294 -18 180 0 0 0 chr4 174801634 174801654 -27526693 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 1914 139 7 7 chr4 174803901 174804182 -27524165 - AluJb SINE Alu -29 283 3 22 0 0 0 chr4 174804184 174804206 -27524141 + AT_rich Low_complexity Low_complexity 1 22 0 331 300 112 29 chr4 174804291 174804568 -27523779 + L2 LINE L2 2314 2613 -701 2162 158 94 7 chr4 174804568 174805024 -27523323 - LTR54 LTR ERV1 0 510 15 922 182 15 25 chr4 174805107 174805305 -27523042 - MER58A DNA MER1_type 0 224 29 538 344 68 63 chr4 174805464 174805889 -27522458 + L2 LINE L2 2837 3263 -9 375 250 0 0 chr4 174806039 174806119 -27522228 + MER116 DNA Mariner 1 80 0 2855 132 24 5 chr4 174806354 174806778 -27521569 + MSTB1 LTR MaLR 1 432 0 665 304 114 29 chr4 174807364 174807706 -27520641 + L2 LINE L2 1805 2175 -1139 258 32 0 0 chr4 174807773 174807804 -27520543 + (CA)n Simple_repeat Simple_repeat 1 31 0 364 200 80 10 chr4 174807825 174807925 -27520422 + MER112 DNA MER1_type 154 260 0 269 254 0 0 chr4 174807925 174807988 -27520359 + L2 LINE L2 2182 2244 -1070 411 264 40 8 chr4 174807989 174808114 -27520233 - Tigger6 DNA MER2_type -17 1580 1452 372 195 130 13 chr4 174808122 174808199 -27520148 - MER58A DNA MER1_type -21 86 1 772 176 0 16 chr4 174808262 174808387 -27519960 - FLAM_A SINE Alu -6 127 5 855 170 78 58 chr4 174808440 174808646 -27519701 - LTR48B LTR ERV1 0 644 435 337 269 59 25 chr4 174808714 174808833 -27519514 - MLT1K LTR MaLR -315 273 151 215 360 70 0 chr4 174809085 174809171 -27519176 - L2 LINE L2 -14 3258 3167 502 266 57 0 chr4 174809342 174809500 -27518847 - L2 LINE L2 -213 3059 2893 249 332 114 50 chr4 174809619 174809839 -27518508 - L2 LINE L2 -528 2786 2553 394 207 0 24 chr4 174810373 174810455 -27517892 + MIR SINE MIR 183 262 0 2547 53 0 0 chr4 174810694 174810993 -27517354 - AluY SINE Alu -12 299 1 2346 102 0 6 chr4 174811145 174811459 -27516888 - AluSx SINE Alu 0 312 1 31 26 0 0 chr4 174811507 174811545 -27516802 + AT_rich Low_complexity Low_complexity 1 38 0 659 37 28 19 chr4 174814453 174814525 -27513822 + (TCTA)n Simple_repeat Simple_repeat 1 181 0 659 37 28 19 chr4 174814525 174814633 -27513714 + (TCTA)n Simple_repeat Simple_repeat 2 110 0 1086 25 31 6 chr4 174814684 174814843 -27513504 + (TCTA)n Simple_repeat Simple_repeat 4 166 0 222 281 0 0 chr4 174815806 174815863 -27512484 + MIR SINE MIR 204 260 -2 301 326 122 23 chr4 174816477 174816649 -27511698 + MIR SINE MIR 20 208 -54 496 69 0 28 chr4 174817358 174817430 -27510917 - L1PA7 LINE L1 -3 6151 6082 1948 127 7 7 chr4 174817430 174817714 -27510633 - AluSx SINE Alu -28 284 1 199 291 171 17 chr4 174817721 174817838 -27510509 - MIR SINE MIR -62 200 66 258 247 41 0 chr4 174818013 174818086 -27510261 - MER20 DNA MER1_type -1 218 143 2106 176 19 8 chr4 174819584 174819943 -27508404 - MLT1A1 LTR MaLR 0 365 3 1951 113 0 83 chr4 174820070 174820397 -27507950 + AluSx SINE Alu 1 300 -12 275 246 0 15 chr4 174821333 174821398 -27506949 - MIR SINE MIR -103 159 96 550 297 87 60 chr4 174821418 174821754 -27506593 + MER77 LTR ERV1 53 357 -205 425 229 37 37 chr4 174821784 174821893 -27506454 + MER77 LTR ERV1 490 598 -7 507 270 208 1 chr4 174823059 174823263 -27505084 - MIR SINE MIR -17 245 1 2155 136 0 0 chr4 174823725 174824026 -27504321 + AluSx SINE Alu 1 301 -11 270 0 0 0 chr4 174824280 174824310 -27504037 + (TG)n Simple_repeat Simple_repeat 1 30 0 1269 214 29 32 chr4 174824310 174824590 -27503757 - AluJo SINE Alu -33 279 1 330 294 11 22 chr4 174825027 174825119 -27503228 - L2 LINE L2 -32 3281 3191 307 303 59 0 chr4 174827015 174827134 -27501213 + ERVL LTR ERVL 5134 5259 -505 1114 179 8 71 chr4 174827144 174827260 -27501087 + MLT1A1 LTR MaLR 3 98 -267 2095 118 10 14 chr4 174827260 174827557 -27500790 - AluSq SINE Alu -17 296 1 1114 179 8 71 chr4 174827557 174827680 -27500667 + MLT1A1 LTR MaLR 98 227 -138 2125 97 90 42 chr4 174827681 174827728 -27500619 + MSTA LTR MaLR 1 44 -320 3331 53 41 90 chr4 174827728 174828195 -27500152 - MLT2A1 LTR ERVL 0 444 1 2125 97 90 42 chr4 174828195 174828526 -27499821 + MSTA LTR MaLR 44 337 -27 2187 127 0 6 chr4 174828526 174828840 -27499507 - AluSx SINE Alu 0 312 1 916 150 0 0 chr4 174828882 174829022 -27499325 + MLT1A1 LTR MaLR 226 365 0 664 220 159 18 chr4 174829099 174829326 -27499021 + LTR50 LTR ERVL 534 792 -3 245 191 0 0 chr4 174829595 174829637 -27498710 - AluJb SINE Alu -10 292 251 1319 171 0 0 chr4 174829637 174829836 -27498511 - AluJb SINE Alu -113 199 1 1828 116 0 91 chr4 174829991 174830311 -27498036 + AluSx SINE Alu 7 297 -15 213 216 0 39 chr4 174831671 174831722 -27496625 + L2 LINE L2 3265 3313 0 342 45 0 0 chr4 174831949 174831993 -27496354 + (CA)n Simple_repeat Simple_repeat 1 44 0 2152 255 46 88 chr4 174832045 174833345 -27495002 - L1MCc LINE L1 -4889 1534 672 3218 97 0 0 chr4 174834109 174834521 -27493826 - L1PA15 LINE L1 0 6165 5754 270 57 0 132 chr4 174834916 174834969 -27493378 + MLT1A2 LTR MaLR 1 46 -328 1649 282 18 42 chr4 174835075 174835539 -27492808 - L1MC4 LINE L1 -554 7488 7045 2567 54 0 10 chr4 174835539 174835852 -27492495 + AluY SINE Alu 1 310 -1 1649 282 18 42 chr4 174835852 174836099 -27492248 - L1MC4 LINE L1 -997 7045 6794 848 205 114 14 chr4 174836705 174836915 -27491432 + L1MC4 LINE L1 7811 8041 -1 773 237 21 41 chr4 174837059 174837244 -27491103 + MIR SINE MIR 16 199 -63 2160 102 0 0 chr4 174837244 174837569 -27490778 + AluY SINE Alu 1 325 0 392 233 25 113 chr4 174837729 174837789 -27490558 + MER103 DNA DNA 1 65 -101 2063 96 7 11 chr4 174837789 174838094 -27490253 - AluSc SINE Alu 0 304 1 392 233 25 113 chr4 174838094 174838191 -27490156 + MER103 DNA DNA 65 145 -21 476 104 12 84 chr4 174840083 174840343 -27488004 + (TTATA)n Simple_repeat Simple_repeat 1 241 0 460 131 23 29 chr4 174840465 174840640 -27487707 + (TTATA)n Simple_repeat Simple_repeat 1 174 0 25 0 0 0 chr4 174840640 174840665 -27487682 + AT_rich Low_complexity Low_complexity 1 25 0 607 57 16 83 chr4 174840665 174840858 -27487489 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 290 71 18 36 chr4 174840861 174840917 -27487430 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 395 48 103 24 chr4 174840920 174841085 -27487262 + (TA)n Simple_repeat Simple_repeat 2 179 0 428 258 159 6 chr4 174841270 174841452 -27486895 + MIR SINE MIR 53 262 0 388 302 34 48 chr4 174841699 174841850 -27486497 - MIR SINE MIR -63 145 9 1594 273 103 10 chr4 174842352 174842483 -27485864 + L2 LINE L2 2171 2288 -1026 1938 100 6 87 chr4 174842483 174842804 -27485543 - AluSg SINE Alu -15 295 1 1594 273 103 10 chr4 174842804 174843276 -27485071 + L2 LINE L2 2288 2830 -484 565 293 27 7 chr4 174843420 174843570 -27484777 + L2 LINE L2 2864 3016 -297 4947 116 16 24 chr4 174843682 174844430 -27483917 + MER4E LTR ERV1 33 774 -5 312 260 0 14 chr4 174845295 174845368 -27482979 + GA-rich Low_complexity Low_complexity 4 75 0 324 0 0 0 chr4 174845449 174845485 -27482862 + (CA)n Simple_repeat Simple_repeat 2 37 0 2181 120 24 51 chr4 174845941 174846315 -27482032 + THE1B LTR MaLR 1 364 0 4087 138 14 163 chr4 174846319 174847380 -27480967 + MER4D LTR ERV1 1 903 0 1674 137 36 74 chr4 174850460 174850797 -27477550 + MER44D DNA MER2_type 1 594 -15 1157 186 42 9 chr4 174851717 174851932 -27476415 + MLT1A1 LTR MaLR 144 365 0 2220 121 0 0 chr4 174852904 174853209 -27475138 + AluSx SINE Alu 1 305 -7 1390 206 22 7 chr4 174853223 174853499 -27474848 - MLT1A1 LTR MaLR 0 365 86 335 259 47 0 chr4 174853540 174853625 -27474722 - MLT1A1 LTR MaLR -282 92 4 436 228 30 0 chr4 174854087 174854188 -27474159 + MIR SINE MIR 159 262 0 204 238 0 0 chr4 174854200 174854263 -27474084 + (TAG)n Simple_repeat Simple_repeat 1 63 0 212 264 54 40 chr4 174854428 174854576 -27473771 - L2 LINE L2 -85 3228 3079 2375 109 0 0 chr4 174854915 174855226 -27473121 - AluSx SINE Alu -1 311 1 1207 182 19 16 chr4 174855463 174855721 -27472626 - L1PB4 LINE L1 -14 6142 5884 1142 240 29 35 chr4 174857006 174857319 -27471028 - MLT1E LTR MaLR 0 593 283 407 227 85 50 chr4 174857287 174857363 -27470984 - MLT1E LTR MaLR -441 152 80 * 324 0 0 0 chr4 174857363 174857399 -27470948 + (CA)n Simple_repeat Simple_repeat 2 37 0 407 227 85 50 chr4 174857399 174857463 -27470884 - MLT1E LTR MaLR -513 80 7 2221 121 0 0 chr4 174857554 174857851 -27470496 + AluSc SINE Alu 1 297 -12 200 329 143 21 chr4 174857872 174858012 -27470335 + L2 LINE L2 2550 2706 -608 23 54 0 0 chr4 174859473 174859510 -27468837 + AT_rich Low_complexity Low_complexity 1 37 0 1574 137 50 30 chr4 174860689 174860989 -27467358 + THE1C LTR MaLR 1 306 -69 297 250 32 43 chr4 174861257 174861429 -27466918 + MIR SINE MIR 18 254 -8 253 374 63 35 chr4 174862951 174863237 -27465110 + L2 LINE L2 2979 3272 0 327 25 0 0 chr4 174863421 174863461 -27464886 - L1P1 LINE L1 -497 5658 5619 226 53 0 0 chr4 174863459 174863497 -27464850 + L1PA6 LINE L1 6115 6152 -2 * 315 0 0 0 chr4 174864292 174864327 -27464020 + (CA)n Simple_repeat Simple_repeat 2 36 0 2036 120 17 13 chr4 174865309 174865610 -27462737 + AluSx SINE Alu 1 302 -10 485 279 55 28 chr4 174866657 174866911 -27461436 - MIR SINE MIR 0 262 2 30 83 0 0 chr4 174867087 174867159 -27461188 + AT_rich Low_complexity Low_complexity 1 72 0 273 208 0 0 chr4 174867435 174867483 -27460864 - HAL1 LINE L1 -979 1528 1481 372 59 0 0 chr4 174867507 174867558 -27460789 + (TC)n Simple_repeat Simple_repeat 2 52 0 990 285 158 34 chr4 174867561 174868473 -27459874 - HAL1 LINE L1 -1052 1455 431 402 73 0 0 chr4 174868575 174868630 -27459717 + L1MA3 LINE L1 6251 6305 0 359 315 45 39 chr4 174868647 174868825 -27459522 - HAL1 LINE L1 -2130 377 199 22 0 0 0 chr4 174868876 174868898 -27459449 + AT_rich Low_complexity Low_complexity 1 22 0 256 134 67 15 chr4 174869124 174869232 -27459115 + (TA)n Simple_repeat Simple_repeat 1 119 -22 2011 125 17 10 chr4 174869232 174869528 -27458819 + AluSq SINE Alu 1 298 -15 256 134 67 15 chr4 174869528 174869553 -27458794 + (TA)n Simple_repeat Simple_repeat 119 141 0 266 330 62 0 chr4 174869638 174869817 -27458530 - L1ME LINE L1 -483 5687 5498 2339 80 0 40 chr4 174869915 174870239 -27458108 - AluY SINE Alu 0 311 1 311 305 0 0 chr4 174870263 174870345 -27458002 - HAL1 LINE L1 -2423 84 3 238 247 21 10 chr4 174870759 174870856 -27457491 - L1ME LINE L1 -341 5821 5724 309 294 96 46 chr4 174871208 174871405 -27456942 - MLT1K LTR MaLR -317 271 65 1532 165 24 0 chr4 174871871 174872168 -27456179 + L1MB2 LINE L1 5861 6164 -7 6382 95 7 4 chr4 174872346 174874106 -27454241 - L1PA8A LINE L1 -32 6099 4336 330 24 0 0 chr4 174874110 174874151 -27454196 + L1PA8A LINE L1 4274 4314 -1832 1319 287 32 8 chr4 174874402 174874778 -27453569 + L2 LINE L2 2539 2923 -391 21 36 0 0 chr4 174874919 174874947 -27453400 + AT_rich Low_complexity Low_complexity 1 28 0 597 214 148 35 chr4 174875997 174876226 -27452121 + LTR16B LTR ERVL 122 376 -88 238 33 0 0 chr4 174876708 174876738 -27451609 + LTR50 LTR ERVL 9 38 -757 1203 229 161 65 chr4 174876743 174877340 -27451007 - MLT1E1 LTR MaLR 0 654 1 539 243 164 9 chr4 174877340 174877545 -27450802 + LTR50 LTR ERVL 42 279 -516 241 286 108 22 chr4 174877688 174877873 -27450474 + LTR50 LTR ERVL 586 786 -9 777 273 96 45 chr4 174878015 174878484 -27449863 - L1ME LINE L1 -301 5820 5328 1663 115 50 35 chr4 174878624 174878884 -27449463 - AluSx SINE Alu 0 312 49 229 323 0 0 chr4 174879055 174879117 -27449230 + MIR3 SINE MIR 145 206 -2 215 299 51 107 chr4 174879369 174879546 -27448801 + MIR SINE MIR 86 252 -10 * 698 286 9 70 chr4 174879532 174879847 -27448500 - L2 LINE L2 -8 3305 3010 317 222 120 91 chr4 174879923 174880198 -27448149 + HAL1 LINE L1 867 1149 -1358 2037 142 10 0 chr4 174881145 174881441 -27446906 + AluSx SINE Alu 1 299 -13 920 276 38 50 chr4 174881610 174882132 -27446215 + L1ME LINE L1 282 797 -5273 6088 92 15 2 chr4 174882132 174883131 -27445216 + L1PB2 LINE L1 5143 6149 -2 323 321 56 26 chr4 174883905 174884130 -27444217 + MIR SINE MIR 17 245 -17 212 135 0 58 chr4 174884131 174884183 -27444164 + (ATGGTG)n Simple_repeat Simple_repeat 6 54 0 246 297 9 45 chr4 174885262 174885373 -27442974 + L3 LINE CR1 901 1007 -570 1642 199 27 0 chr4 174885373 174885665 -27442682 + AluJb SINE Alu 1 300 -12 222 208 0 0 chr4 174885687 174885735 -27442612 + GA-rich Low_complexity Low_complexity 3 50 0 2115 116 7 7 chr4 174885768 174886069 -27442278 - AluSx SINE Alu -11 301 1 2553 65 3 0 chr4 174886604 174886912 -27441435 - AluY SINE Alu -2 309 1 381 274 19 0 chr4 174887125 174887231 -27441116 + MLT1J2 LTR MaLR 67 174 -276 2466 69 0 3 chr4 174887412 174887718 -27440629 + AluY SINE Alu 1 305 -6 837 253 46 66 chr4 174888629 174889024 -27439323 + MLT1J1 LTR MaLR 38 424 -22 198 222 0 0 chr4 174889384 174889420 -27438927 + L2 LINE L2 3262 3297 -16 22 35 0 0 chr4 174890112 174890141 -27438206 + AT_rich Low_complexity Low_complexity 1 29 0 2311 94 3 0 chr4 174890630 174890928 -27437419 + AluSg SINE Alu 1 299 -11 188 234 0 43 chr4 174891745 174891792 -27436555 + L2 LINE L2 3214 3258 -14 203 306 181 0 chr4 174891820 174891892 -27436455 - L2 LINE L2 -2 3311 3227 25 31 0 0 chr4 174891923 174891955 -27436392 + AT_rich Low_complexity Low_complexity 1 32 0 483 228 134 16 chr4 174892007 174892134 -27436213 + MIR SINE MIR 104 245 -17 190 220 0 40 chr4 174892764 174892797 -27435550 + L2 LINE L2 1279 1309 -2005 221 277 57 9 chr4 174892797 174892934 -27435413 - MER5A DNA MER1_type 0 178 4 317 284 110 0 chr4 174892948 174893075 -27435272 + L2 LINE L2 1316 1456 -1858 853 295 109 27 chr4 174893078 174893519 -27434828 + L2 LINE L2 1707 2183 -1131 1774 179 75 30 chr4 174894970 174895407 -27432940 + LTR2B LTR ERV1 34 490 0 24 32 0 0 chr4 174896217 174896248 -27432099 + AT_rich Low_complexity Low_complexity 1 31 0 265 322 111 29 chr4 174897032 174897191 -27431156 - MER5A DNA MER1_type -3 186 11 2409 46 26 10 chr4 174897191 174897495 -27430852 - AluY SINE Alu -2 309 1 265 322 111 29 chr4 174897495 174897506 -27430841 - MER5A DNA MER1_type -178 11 2 204 378 34 47 chr4 174898262 174898495 -27429852 + L2 LINE L2 3034 3263 -9 35 41 0 0 chr4 174898543 174898592 -27429755 + AT_rich Low_complexity Low_complexity 1 49 0 301 191 22 67 chr4 174899002 174899091 -27429256 - MER31A LTR ERV1 -48 437 353 218 268 0 0 chr4 174899120 174899176 -27429171 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 661 255 84 80 chr4 174899535 174899774 -27428573 + MIR SINE MIR 23 262 0 627 255 72 0 chr4 174899802 174899955 -27428392 - MER96 DNA MER1_type? -11 164 1 480 167 233 0 chr4 174900909 174901029 -27427318 - MER4C LTR ERV1 -18 447 300 1081 158 126 47 chr4 174901094 174901411 -27426936 - MER4A LTR ERV1 -322 342 1 1274 206 40 93 chr4 174901544 174902019 -27426328 + LTR16A1 LTR ERVL 8 457 0 4297 150 50 5 chr4 174904034 174904849 -27423498 + L1PB4 LINE L1 5305 6156 0 255 350 112 7 chr4 174906540 174906683 -27421664 - MIR SINE MIR -85 177 20 198 0 0 0 chr4 174906833 174906855 -27421492 + (TA)n Simple_repeat Simple_repeat 2 23 0 746 225 121 7 chr4 174906856 174907136 -27421211 - L1ME4a LINE L1 -32 6089 5778 549 287 28 6 chr4 174907171 174907352 -27420995 - MIR SINE MIR -49 213 29 230 222 93 9 chr4 174907411 174907519 -27420828 - L1ME4a LINE L1 -405 5716 5600 364 322 74 70 chr4 174907615 174907843 -27420504 - L1ME4a LINE L1 -580 5541 5310 2224 59 0 4 chr4 174907843 174908114 -27420233 - AluY SINE Alu -13 298 29 364 322 74 70 chr4 174908114 174908155 -27420192 - L1ME4a LINE L1 -811 5310 5271 212 191 95 0 chr4 174908319 174908361 -27419986 - L2 LINE L2 0 3313 3268 4286 136 11 12 chr4 174911104 174911827 -27416520 + MER50 LTR ERV1 1 722 -12 5774 143 33 21 chr4 174911828 174913559 -27414788 + MER50-int LTR ERV1 8 1850 -5355 * 8095 188 31 26 chr4 174913553 174915297 -27413050 + MER50-int LTR ERV1 2787 4540 -2665 9512 107 23 12 chr4 174915299 174916776 -27411571 + MER50-int LTR ERV1 4713 6205 -1000 2468 122 8 0 chr4 174916758 174917128 -27411219 + MER50-int LTR ERV1 6825 7197 -8 * 3800 151 29 14 chr4 174917128 174917822 -27410525 + MER50 LTR ERV1 1 704 -30 849 244 72 5 chr4 174918769 174918978 -27409369 - MIR SINE MIR -33 229 7 547 191 0 0 chr4 174920349 174920454 -27407893 + Tigger3(Golem) DNA MER2_type 3 107 -2922 * 4087 111 27 56 chr4 174920446 174920509 -27407838 + Tigger3(Golem) DNA MER2_type 2277 2340 -688 1681 212 0 7 chr4 174920509 174920811 -27407536 - AluJo SINE Alu -12 300 1 4087 111 27 56 chr4 174920811 174921036 -27407311 + Tigger3(Golem) DNA MER2_type 2340 2570 -458 2199 116 0 3 chr4 174921036 174921330 -27407017 + AluSc SINE Alu 1 293 -16 4087 111 27 56 chr4 174921330 174921814 -27406533 + Tigger3(Golem) DNA MER2_type 2570 3028 0 22 35 0 0 chr4 174921849 174921878 -27406469 + AT_rich Low_complexity Low_complexity 1 29 0 33 0 0 0 chr4 174922409 174922442 -27405905 + AT_rich Low_complexity Low_complexity 1 33 0 1543 154 105 54 chr4 174923652 174924023 -27404324 + MLT1B LTR MaLR 1 390 0 449 264 98 68 chr4 174924034 174924269 -27404078 - MIR SINE MIR -1 261 20 903 232 73 18 chr4 174924293 174924513 -27403834 + MIR SINE MIR 10 241 -21 212 261 108 81 chr4 174924583 174924694 -27403653 - MIR SINE MIR -60 202 89 257 330 140 21 chr4 174926242 174926527 -27401820 + L2 LINE L2 2607 2925 -389 1503 146 32 0 chr4 174926655 174926875 -27401472 - AluJb SINE Alu -1 311 85 282 304 49 20 chr4 174926941 174927043 -27401304 + L2 LINE L2 3137 3241 -31 2253 87 3 44 chr4 174927908 174928229 -27400118 - AluSg SINE Alu -2 308 1 646 200 157 22 chr4 174930502 174930687 -27397660 + MER63A DNA MER1_type 1 210 0 2298 104 0 0 chr4 174930812 174931111 -27397236 + AluSg1 SINE Alu 1 299 -10 1134 124 0 32 chr4 174931111 174931348 -27396999 + AluSg/x SINE Alu 132 362 0 2355 98 0 0 chr4 174931898 174932195 -27396152 + AluSx SINE Alu 1 297 -15 215 314 105 0 chr4 174932794 174932880 -27395467 + L3 LINE CR1 1249 1343 -234 181 188 42 62 chr4 174932920 174932968 -27395379 + L3 LINE CR1 1516 1562 -15 600 194 200 0 chr4 174933672 174933847 -27394500 - MER63A DNA MER1_type 0 210 1 2051 150 16 0 chr4 174934166 174934591 -27393756 + AluJb SINE Alu 1 430 0 2065 95 67 3 chr4 174934594 174934879 -27393468 + AluSg SINE Alu 1 303 -7 469 259 13 44 chr4 174934887 174935051 -27393296 - MER5A DNA MER1_type -13 176 7 1748 169 53 31 chr4 174935400 174935813 -27392534 - L1MA4 LINE L1 0 6300 5879 217 253 198 11 chr4 174935950 174936041 -27392306 + MIR SINE MIR 35 142 -120 2195 90 4 0 chr4 174936061 174936370 -27391977 + AluSg SINE Alu 1 310 0 412 285 166 0 chr4 174936679 174936830 -27391517 - MER5A DNA MER1_type 0 189 14 28 29 0 0 chr4 174937233 174937268 -27391079 + AT_rich Low_complexity Low_complexity 1 35 0 410 238 23 158 chr4 174938701 174938966 -27389381 - MIR SINE MIR 0 262 34 285 259 254 20 chr4 174939377 174939574 -27388773 + MIR SINE MIR 20 262 0 491 238 0 0 chr4 174939851 174939952 -27388395 + Tigger3(Golem) DNA MER2_type 1 101 -2928 3246 136 89 38 chr4 174939962 174940250 -27388097 + Tigger3(Golem) DNA MER2_type 2284 2556 -472 2451 93 0 0 chr4 174940250 174940561 -27387786 - AluSx SINE Alu -1 311 1 3246 136 89 38 chr4 174940561 174940980 -27387367 + Tigger3(Golem) DNA MER2_type 2556 3027 -1 743 141 133 0 chr4 174941203 174941360 -27386987 + FRAM SINE Alu 1 174 0 855 311 146 30 chr4 174941390 174942271 -27386076 - L1M4 LINE L1 -747 5399 4416 1975 139 3 10 chr4 174942606 174942908 -27385439 + AluSx SINE Alu 13 312 0 906 141 7 0 chr4 174943335 174943470 -27384877 - AluSq/x SINE Alu -177 136 1 526 316 53 7 chr4 174943540 174943692 -27384655 + MIR SINE MIR 12 170 -92 2093 146 7 56 chr4 174943692 174943738 -27384609 + MLT1B LTR MaLR 1 48 -342 1784 196 22 3 chr4 174943738 174944096 -27384251 - MLT1A1 LTR MaLR 0 365 1 2093 146 7 56 chr4 174944096 174944459 -27383888 + MLT1B LTR MaLR 48 390 0 222 306 69 0 chr4 174944459 174944531 -27383816 + MIR SINE MIR 166 242 -20 232 193 70 0 chr4 174944559 174944616 -27383731 + GA-rich Low_complexity Low_complexity 1 61 0 298 219 162 48 chr4 174944802 174944907 -27383440 - L2 LINE L2 -4 3309 3193 839 133 144 11 chr4 174945115 174945295 -27383052 + MER3 DNA MER1_type 6 209 0 2096 147 3 6 chr4 174945506 174945819 -27382528 + AluJo SINE Alu 1 312 0 322 279 29 0 chr4 174946638 174946742 -27381605 + MER94 DNA DNA 26 132 -2 344 325 108 36 chr4 174949166 174949360 -27378987 + L2 LINE L2 3096 3303 -10 242 301 44 18 chr4 174949985 174950098 -27378249 - MLT1-int LTR MaLR -830 541 426 1378 271 114 14 chr4 174950357 174950858 -27377489 - MLT1H1 LTR MaLR -4 551 1 1017 296 64 30 chr4 174950912 174951924 -27376423 + L1ME3A LINE L1 4040 5016 -1154 1603 206 116 44 chr4 174951924 174952405 -27375942 - MLT2B1 LTR ERVL 0 520 5 1017 296 64 30 chr4 174952405 174952538 -27375809 + L1ME3A LINE L1 5016 5143 -1027 1291 245 24 37 chr4 174952538 174952917 -27375430 - MLT1A2 LTR MaLR 0 374 1 1017 296 64 30 chr4 174952917 174953032 -27375315 + L1ME3A LINE L1 5143 5253 -917 3332 140 30 54 chr4 174953032 174953659 -27374688 + LTR9 LTR ERV1 1 612 0 1017 296 64 30 chr4 174953659 174954042 -27374305 + L1ME3A LINE L1 5253 5848 -322 186 103 0 0 chr4 174954070 174954099 -27374248 + (TAA)n Simple_repeat Simple_repeat 1 29 0 526 262 68 44 chr4 174954114 174954320 -27374027 - MIR SINE MIR -24 238 28 21 0 0 0 chr4 174954536 174954557 -27373790 + AT_rich Low_complexity Low_complexity 1 21 0 189 214 0 0 chr4 174954571 174954613 -27373734 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 258 202 174 18 chr4 174954778 174954887 -27373460 + L1ME LINE L1 5395 5520 -642 828 86 113 7 chr4 174955044 174955195 -27373152 - L1MA7 LINE L1 0 6291 6125 254 313 16 8 chr4 174956006 174956134 -27372213 + L1ME LINE L1 5586 5714 -407 197 314 0 0 chr4 174957366 174957417 -27370930 + L2 LINE L2 3257 3307 -6 485 271 31 63 chr4 174958542 174958673 -27369674 - L1MC4 LINE L1 0 8042 7921 1700 195 54 11 chr4 174958673 174959022 -27369325 + MLT1A1 LTR MaLR 1 364 -1 485 271 31 63 chr4 174959022 174959145 -27369202 - L1MC4 LINE L1 -121 7921 7796 2305 84 0 0 chr4 174959169 174959489 -27368858 - AluSq SINE Alu 0 320 1 21 57 0 0 chr4 174960144 174960179 -27368168 + AT_rich Low_complexity Low_complexity 1 35 0 181 381 19 7 chr4 174963628 174963783 -27364564 + L2 LINE L2 2152 2308 -1006 2172 97 13 24 chr4 174964300 174964598 -27363749 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr4 174964908 174964929 -27363418 + AT_rich Low_complexity Low_complexity 1 21 0 227 291 0 0 chr4 174965501 174965556 -27362791 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 261 223 21 43 chr4 174965556 174965650 -27362697 - L1MC4 LINE L1 -1339 6703 6612 25 65 0 0 chr4 174965765 174965811 -27362536 + AT_rich Low_complexity Low_complexity 1 46 0 1738 179 3 35 chr4 174965895 174966213 -27362134 - AluJo SINE Alu -4 308 1 593 276 112 0 chr4 174966561 174966731 -27361616 + MIR SINE MIR 53 241 -21 1780 129 0 97 chr4 174966884 174967224 -27361123 - AluJb SINE Alu -5 307 1 2105 107 3 45 chr4 174967288 174967596 -27360751 - AluSx SINE Alu -17 295 1 29 0 0 0 chr4 174968695 174968724 -27359623 + AT_rich Low_complexity Low_complexity 1 29 0 411 197 0 0 chr4 174969255 174969326 -27359021 - FLAM SINE Alu -19 124 54 273 246 0 33 chr4 174970410 174970471 -27357876 + MIR SINE MIR 89 147 -61 200 203 16 65 chr4 174970998 174971121 -27357226 + (TTATA)n Simple_repeat Simple_repeat 5 121 0 327 171 43 26 chr4 174971282 174971399 -27356948 + (TATAA)n Simple_repeat Simple_repeat 1 119 0 294 89 69 20 chr4 174971419 174971520 -27356827 + (TA)n Simple_repeat Simple_repeat 2 107 0 465 106 39 44 chr4 174971601 174971781 -27356566 + (TA)n Simple_repeat Simple_repeat 1 179 0 205 305 49 24 chr4 174973768 174973850 -27354497 - L2 LINE L2 -52 3220 3137 752 106 0 0 chr4 174976051 174976155 -27352192 + AluSp SINE Alu 1 104 -209 2111 78 25 0 chr4 174976158 174976441 -27351906 - AluSg SINE Alu -20 290 1 270 342 17 17 chr4 174977557 174977674 -27350673 - L2 LINE L2 -1 3271 3155 478 308 143 11 chr4 174977773 174977955 -27350392 - MIR SINE MIR -34 228 23 986 154 12 0 chr4 174978364 174978526 -27349821 + FRAM SINE Alu 1 164 -2 183 339 18 36 chr4 174978791 174978903 -27349444 - MIR SINE MIR -49 213 104 1472 157 106 0 chr4 174979344 174979599 -27348748 - AluJo SINE Alu -20 292 11 368 225 0 0 chr4 174979664 174979744 -27348603 - MER103 DNA DNA -50 116 37 356 318 123 71 chr4 174983632 174984252 -27344095 + L1M2 LINE L1 446 1097 -5752 213 39 0 0 chr4 174985459 174985485 -27342862 + (T)n Simple_repeat Simple_repeat 1 26 0 301 280 178 17 chr4 174986216 174986334 -27342013 - MER5A DNA MER1_type -7 182 46 879 192 84 0 chr4 174987028 174987195 -27341152 + MER63B DNA MER1_type 6 186 -250 550 258 36 30 chr4 174987205 174987372 -27340975 + MLT1F1 LTR MaLR 27 194 -373 499 245 70 108 chr4 174987414 174987700 -27340647 + MLT1F1 LTR MaLR 177 451 -116 335 190 10 50 chr4 174987699 174987799 -27340548 + MER63B DNA MER1_type 169 264 -171 * 266 339 24 18 chr4 174987801 174987969 -27340378 + L1MB1 LINE L1 674 842 -5937 236 338 0 0 chr4 174988074 174988148 -27340199 + L1MB1 LINE L1 1201 1274 -5495 259 233 67 83 chr4 174988216 174988336 -27340011 + L1MB1 LINE L1 1400 1517 -5252 287 24 71 0 chr4 174988370 174988412 -27339935 + A-rich Low_complexity Low_complexity 1 45 0 2111 226 37 21 chr4 174988444 174989068 -27339279 + L1MB1 LINE L1 1569 2202 -4577 6500 183 47 16 chr4 174989081 174989541 -27338806 + L1MB1 LINE L1 2659 3103 -3767 3055 34 8 5 chr4 174989541 174989924 -27338423 + L1PA4 LINE L1 5767 6150 -5 6500 183 47 16 chr4 174989924 174990415 -27337932 + L1MB1 LINE L1 3103 3577 -3293 2145 123 3 0 chr4 174990415 174990708 -27337639 + AluSq SINE Alu 5 298 -15 6500 183 47 16 chr4 174990708 174993670 -27334677 + L1MB1 LINE L1 3577 6833 -37 2292 99 3 13 chr4 174993670 174993984 -27334363 + AluSx SINE Alu 1 311 -1 6500 183 47 16 chr4 174993984 174994012 -27334335 + L1MB1 LINE L1 6833 6859 -11 547 239 5 82 chr4 174994074 174994258 -27334089 + Charlie1 DNA MER1_type 1464 1633 -1128 825 191 52 29 chr4 174994266 174994476 -27333871 + MER63B DNA MER1_type 221 435 0 182 265 216 29 chr4 174994570 174994672 -27333675 - MER5A DNA MER1_type -5 184 64 186 43 0 0 chr4 174994777 174994800 -27333547 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 378 203 42 112 chr4 174995951 174996094 -27332253 - FLAM_A SINE Alu 0 133 1 1181 169 101 27 chr4 174996170 174996466 -27331881 - MER33 DNA MER1_type 0 324 7 220 315 37 28 chr4 174996886 174996994 -27331353 + MIR SINE MIR 9 117 -145 911 164 12 0 chr4 174997000 174997171 -27331176 - LTR16A LTR ERVL -5 445 273 252 294 100 38 chr4 174997267 174997427 -27330920 + L2 LINE L2 1599 1768 -1546 246 353 0 0 chr4 174997465 174997550 -27330797 - MIR SINE MIR 0 262 178 1496 221 36 70 chr4 174997561 174998004 -27330343 + LTR16A LTR ERVL 13 440 -10 313 232 30 40 chr4 174998024 174998123 -27330224 - MIR SINE MIR -156 106 9 204 253 0 101 chr4 174998165 174998264 -27330083 + L2 LINE L2 1932 2020 -1294 244 316 112 60 chr4 174998346 174998561 -27329786 + L2 LINE L2 3047 3272 0 228 200 0 0 chr4 175000123 175000183 -27328164 + GA-rich Low_complexity Low_complexity 2 61 0 23 0 0 0 chr4 175000410 175000433 -27327914 + AT_rich Low_complexity Low_complexity 1 23 0 958 160 0 29 chr4 175000745 175000920 -27327427 - AluSg/x SINE Alu 0 310 141 1087 133 11 11 chr4 175001308 175001489 -27326858 + AluSq SINE Alu 1 181 -132 882 133 14 0 chr4 175001645 175001788 -27326559 - L1M2 LINE L1 -554 5743 5599 22 0 0 0 chr4 175002028 175002050 -27326297 + AT_rich Low_complexity Low_complexity 1 22 0 2192 113 7 0 chr4 175002828 175003128 -27325219 + AluSx SINE Alu 1 302 -10 221 255 0 0 chr4 175004402 175004453 -27323894 + GA-rich Low_complexity Low_complexity 2 52 0 2428 153 52 11 chr4 175005304 175005750 -27322597 + MLT2C2 LTR ERVL 1 464 0 2342 104 3 0 chr4 175006081 175006388 -27321959 + AluSq SINE Alu 1 308 -5 351 282 0 0 chr4 175007132 175007393 -27320954 + G-rich Low_complexity Low_complexity 1 261 0 204 250 0 0 chr4 175007978 175008042 -27320305 + (TA)n Simple_repeat Simple_repeat 2 65 0 22 35 0 0 chr4 175008102 175008131 -27320216 + AT_rich Low_complexity Low_complexity 1 29 0 186 43 0 0 chr4 175009169 175009192 -27319155 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 347 248 30 40 chr4 175009385 175009486 -27318861 - MIR SINE MIR -86 122 23 283 308 98 45 chr4 175009518 175009651 -27318696 + MIR3 SINE MIR 16 155 -53 1712 179 55 9 chr4 175011146 175011475 -27316872 + MER2 DNA MER2_type 1 344 0 551 211 97 34 chr4 175012055 175012230 -27316117 + MER33 DNA MER1_type 1 186 -138 336 167 0 0 chr4 175012235 175012295 -27316052 - AluJo SINE Alu -1 301 242 1130 162 47 11 chr4 175012297 175012488 -27315859 - AluJo SINE Alu -113 199 2 509 164 52 8 chr4 175012489 175012623 -27315724 + MER33 DNA MER1_type 224 363 0 408 296 128 42 chr4 175013516 175014088 -27314259 + L1MC4a LINE L1 5287 5907 -1901 2090 133 7 10 chr4 175015007 175015316 -27313031 - AluJb SINE Alu -4 308 1 696 137 38 142 chr4 175015423 175015634 -27312713 + AluSq SINE Alu 114 302 -11 432 196 125 60 chr4 175015795 175015963 -27312384 + MIR SINE MIR 70 248 -14 * 687 211 17 46 chr4 175015961 175016136 -27312211 - MIR SINE MIR -6 256 87 2124 101 10 14 chr4 175016405 175016701 -27311646 + AluSg SINE Alu 1 295 -15 210 240 100 75 chr4 175017001 175017201 -27311146 + L2 LINE L2 2147 2351 -963 225 0 0 0 chr4 175019241 175019266 -27309081 + (CGGGGG)n Simple_repeat Simple_repeat 1 25 0 264 114 186 0 chr4 175019462 175019532 -27308815 - L1MA9 LINE L1 -9 6303 6221 305 284 106 43 chr4 175020194 175020335 -27308012 + MIR SINE MIR 4 153 -109 192 77 0 0 chr4 175020463 175020489 -27307858 + (CA)n Simple_repeat Simple_repeat 2 27 0 5170 275 126 15 chr4 175020523 175022561 -27305786 - L2 LINE L2 -164 3149 873 470 355 217 0 chr4 175022579 175023109 -27305238 - L2 LINE L2 -511 2803 2159 806 144 14 0 chr4 175024110 175024256 -27304091 + CT-rich Low_complexity Low_complexity 2 149 0 219 250 52 62 chr4 175024385 175024481 -27303866 - L2 LINE L2 -4 3309 3215 697 226 196 5 chr4 175024520 175024719 -27303628 + MIR SINE MIR 5 241 -21 376 371 92 39 chr4 175024848 175025546 -27302801 + L2 LINE L2 1999 2733 -581 532 338 107 36 chr4 175026026 175026340 -27302007 + L2 LINE L2 2722 3071 -201 743 196 175 16 chr4 175026340 175026529 -27301818 - MER20 DNA MER1_type 0 219 1 532 338 107 36 chr4 175026529 175026711 -27301636 + L2 LINE L2 3071 3239 -33 1675 192 44 0 chr4 175026715 175027075 -27301272 + MLT1B LTR MaLR 7 382 -8 268 173 0 0 chr4 175027886 175027938 -27300409 + MER103 DNA DNA 10 61 -105 382 279 81 10 chr4 175028297 175028494 -27299853 + MLT1K LTR MaLR 375 585 -3 625 265 178 63 chr4 175029154 175029309 -27299038 + MLT1K LTR MaLR 14 150 -438 2266 116 3 29 chr4 175029309 175029654 -27298693 - MER1B DNA MER1_type 0 337 2 625 265 178 63 chr4 175029654 175029924 -27298423 + MLT1K LTR MaLR 150 488 -100 731 299 82 31 chr4 175030190 175030615 -27297732 - MLT1L LTR MaLR -166 449 3 196 206 0 32 chr4 175031487 175031550 -27296797 + CT-rich Low_complexity Low_complexity 2 62 0 803 246 58 118 chr4 175031601 175032189 -27296158 - MLT1F1 LTR MaLR -8 559 1 1393 229 52 24 chr4 175032189 175032613 -27295734 - L1ME1 LINE L1 -62 6104 5669 640 141 125 0 chr4 175032614 175032742 -27295605 + MLT2D LTR ERVL 2 145 -269 878 178 24 0 chr4 175032745 175032914 -27295433 + MLT2C2 LTR ERVL 292 464 0 645 275 48 57 chr4 175032914 175032953 -27295394 + HERVL-C2 LTR ERVL 1 39 -5615 6232 98 5 33 chr4 175032953 175034312 -27294035 - L1PA11 LINE L1 0 6174 4811 645 275 48 57 chr4 175034312 175034603 -27293744 + HERVL-C2 LTR ERVL 39 328 -5326 626 283 51 42 chr4 175034660 175034992 -27293355 - MLT1K LTR MaLR -164 424 90 296 371 53 20 chr4 175035123 175035274 -27293073 + L2 LINE L2 3105 3260 -12 196 162 81 0 chr4 175039048 175039085 -27289262 + L2 LINE L2 3269 3308 -5 800 166 30 12 chr4 175039155 175039324 -27289023 - MER20 DNA MER1_type -47 172 1 1701 188 71 42 chr4 175039447 175039899 -27288448 - MLT1C LTR MaLR 0 467 3 2268 118 0 0 chr4 175041446 175041750 -27286597 - AluSx SINE Alu -8 304 1 336 288 0 48 chr4 175042958 175043104 -27285243 + MLT1E LTR MaLR 1 139 -515 1199 249 39 33 chr4 175043143 175043532 -27284815 + MLT1E LTR MaLR 200 590 -3 9663 135 44 5 chr4 175043781 175045628 -27282719 + Tigger1 DNA MER2_type 26 1981 -437 4634 125 37 0 chr4 175045629 175046725 -27281622 + L1P4 LINE L1 4379 5533 -635 2067 143 37 11 chr4 175046827 175047204 -27281143 + Tigger1 DNA MER2_type 2030 2416 -2 2051 112 7 26 chr4 175047724 175048028 -27280319 - AluSx SINE Alu -14 298 1 2081 135 3 0 chr4 175048694 175049006 -27279341 + AluSq SINE Alu 1 313 0 290 278 14 0 chr4 175050244 175050316 -27278031 - MIR3 SINE MIR -17 191 119 487 225 39 31 chr4 175050695 175050824 -27277523 + L3 LINE CR1 1240 1369 -208 484 287 78 86 chr4 175050822 175051195 -27277152 - L2 LINE L2 0 3313 2944 * 395 291 60 26 chr4 175051220 175051371 -27276976 + L3 LINE CR1 1408 1563 -14 21 0 0 0 chr4 175051936 175051957 -27276390 + AT_rich Low_complexity Low_complexity 1 21 0 352 353 43 7 chr4 175053235 175053374 -27274973 + L2 LINE L2 2935 3078 -194 181 349 79 0 chr4 175053413 175053476 -27274871 + L2 LINE L2 3156 3223 -49 196 346 50 0 chr4 175053506 175053607 -27274740 - L2 LINE L2 -435 2879 2774 2512 70 0 0 chr4 175054332 175054631 -27273716 - AluSg SINE Alu -11 299 1 932 212 60 121 chr4 175055496 175055911 -27272436 - MLT1C LTR MaLR 0 390 1 203 324 25 37 chr4 175057837 175057965 -27270382 + MIR SINE MIR 23 146 -62 24 32 0 0 chr4 175058741 175058772 -27269575 + AT_rich Low_complexity Low_complexity 1 31 0 252 100 0 0 chr4 175059469 175059509 -27268838 + (CA)n Simple_repeat Simple_repeat 1 40 0 634 114 286 0 chr4 175059909 175059947 -27268400 - HSMAR2 DNA Mariner -1 1301 1275 186 71 0 0 chr4 175059947 175059975 -27268372 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 634 114 286 0 chr4 175059975 175060076 -27268271 - HSMAR2 DNA Mariner -27 1275 1122 228 67 0 0 chr4 175060076 175060106 -27268241 + (CATATA)n Simple_repeat Simple_repeat 1 30 0 279 100 0 0 chr4 175060157 175060197 -27268150 + L1PBa LINE L1 2023 2062 -4801 243 105 0 0 chr4 175060204 175060242 -27268105 + L1PBa LINE L1 2025 2062 -4801 705 185 8 0 chr4 175060250 175060380 -27267967 - HSMAR2 DNA Mariner -190 1112 982 955 79 40 0 chr4 175060380 175060532 -27267815 + L1PBa LINE L1 1904 2061 -4802 242 245 11 21 chr4 175060534 175060628 -27267719 + L1MC4 LINE L1 6608 6700 -1342 4544 152 24 19 chr4 175060629 175061427 -27266920 - HSMAR2 DNA Mariner -188 1114 313 14514 155 65 8 chr4 175061428 175064289 -27264058 + L1PBa LINE L1 464 3723 -3139 2030 137 3 10 chr4 175064289 175064595 -27263752 - AluSx SINE Alu -6 306 3 14514 155 65 8 chr4 175064595 175066651 -27261696 + L1PBa LINE L1 3723 5661 -1201 1948 38 0 0 chr4 175066645 175066884 -27261463 - L1P LINE L1 -2594 3552 3314 * 2632 37 0 6 chr4 175066884 175067235 -27261112 + L1P LINE L1 2954 3302 -2844 22 0 0 0 chr4 175067347 175067369 -27260978 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 175067478 175067506 -27260841 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr4 175067706 175067740 -27260607 + AT_rich Low_complexity Low_complexity 1 34 0 895 98 0 8 chr4 175069410 175069533 -27258814 + AluY SINE Alu 1 122 -189 6893 40 10 46 chr4 175069545 175070479 -27257868 + L1PA4 LINE L1 5254 6153 -2 24 53 0 0 chr4 175071547 175071585 -27256762 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr4 175071825 175071865 -27256482 + AT_rich Low_complexity Low_complexity 1 40 0 27 49 0 0 chr4 175072249 175072290 -27256057 + AT_rich Low_complexity Low_complexity 1 41 0 1100 183 52 102 chr4 175072705 175073165 -27255182 + MER69B DNA AcHobo 505 941 -285 2779 238 74 22 chr4 175073169 175074112 -27254235 + L1M4 LINE L1 3465 4456 -1690 12253 122 47 22 chr4 175074123 175076106 -27252241 + Tigger4(Zombi) DNA MER2_type 699 2731 0 196 302 0 19 chr4 175077729 175077782 -27250565 + MIR SINE MIR 26 77 -185 981 273 138 35 chr4 175077864 175078384 -27249963 - MLT1L LTR MaLR -35 580 7 1616 215 8 30 chr4 175078543 175078911 -27249436 + MLT1A1 LTR MaLR 6 365 0 184 208 117 52 chr4 175079259 175079336 -27249011 - L2 LINE L2 -597 2717 2636 769 313 70 62 chr4 175080707 175081061 -27247286 + L1MEc LINE L1 78 428 -5968 216 0 0 0 chr4 175081061 175081085 -27247262 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 769 313 70 62 chr4 175081085 175081714 -27246633 + L1MEc LINE L1 428 1069 -5327 22 0 0 0 chr4 175083811 175083833 -27244514 + AT_rich Low_complexity Low_complexity 1 22 0 221 255 11 11 chr4 175084158 175084252 -27244095 + (TA)n Simple_repeat Simple_repeat 1 94 0 2692 138 30 2 chr4 175084267 175084694 -27243653 - Tigger2 DNA MER2_type 0 2718 2280 413 159 0 0 chr4 175084692 175084761 -27243586 - Tigger2 DNA MER2_type -2649 69 1 * 21 36 0 0 chr4 175084850 175084878 -27243469 + AT_rich Low_complexity Low_complexity 1 28 0 2099 117 0 4 chr4 175085269 175085581 -27242766 + AluSx SINE Alu 6 316 0 277 274 12 0 chr4 175085730 175085814 -27242533 + Charlie1 DNA MER1_type 2677 2761 0 2281 86 0 0 chr4 175085879 175086171 -27242176 - AluSc SINE Alu -12 297 6 2180 106 26 0 chr4 175086187 175086489 -27241858 - AluSg SINE Alu 0 310 1 187 299 165 0 chr4 175087027 175087124 -27241223 - MIR SINE MIR -113 149 37 22 56 0 0 chr4 175087351 175087387 -27240960 + AT_rich Low_complexity Low_complexity 1 36 0 1902 117 7 50 chr4 175088079 175088377 -27239970 - AluSg SINE Alu -24 286 2 380 293 87 109 chr4 175088400 175088803 -27239544 + L2 LINE L2 2920 3313 0 6140 93 24 150 chr4 175090777 175091099 -27237248 + Tigger3b DNA MER2_type 1 362 -2667 3402 30 0 108 chr4 175091099 175091600 -27236747 + L1PA4 LINE L1 5706 6152 -3 6140 93 24 150 chr4 175091600 175092238 -27236109 + Tigger3b DNA MER2_type 362 951 -2078 1437 99 0 11 chr4 175092238 175092429 -27235918 - AluSq SINE Alu -25 288 100 6140 93 24 150 chr4 175092429 175092680 -27235667 + Tigger3b DNA MER2_type 951 1232 0 234 326 0 11 chr4 175095986 175096081 -27232266 + (TA)n Simple_repeat Simple_repeat 2 95 0 334 331 15 8 chr4 175097652 175097785 -27230562 - MER94 DNA DNA 0 134 1 1304 180 7 102 chr4 175098424 175098729 -27229618 + AluJo SINE Alu 13 288 -24 654 133 0 0 chr4 175099312 175099410 -27228937 - AluSg/x SINE Alu -5 305 208 858 116 0 0 chr4 175099412 175099524 -27228823 + AluSq/x SINE Alu 5 116 -196 2034 140 14 17 chr4 175100051 175100400 -27227947 - MER7A DNA MER2_type 0 346 1 1840 99 0 143 chr4 175102015 175102378 -27225969 - AluSx SINE Alu -1 311 1 1081 205 0 0 chr4 175102702 175102907 -27225440 + MER3 DNA MER1_type 3 207 -2 2377 94 0 3 chr4 175104838 175105147 -27223200 + AluSg SINE Alu 1 308 -2 792 315 178 24 chr4 175105631 175106085 -27222262 + L3 LINE CR1 859 1382 -195 2242 150 42 46 chr4 175106093 175106306 -27222041 + Tigger2a DNA MER2_type 3 215 -2493 1581 97 90 45 chr4 175106306 175106594 -27221753 - L1PA13 LINE L1 -5 6158 5858 2242 150 42 46 chr4 175106594 175106814 -27221533 + Tigger2a DNA MER2_type 215 434 0 201 351 43 21 chr4 175106935 175107029 -27221318 + L3 LINE CR1 1479 1574 -3 211 264 0 0 chr4 175108715 175108768 -27219579 + MIR3 SINE MIR 149 201 -7 26 30 0 0 chr4 175109247 175109280 -27219067 + AT_rich Low_complexity Low_complexity 1 33 0 207 0 0 0 chr4 175110397 175110420 -27217927 + (T)n Simple_repeat Simple_repeat 1 23 0 24 0 0 0 chr4 175110504 175110528 -27217819 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 175110568 175110590 -27217757 + AT_rich Low_complexity Low_complexity 1 22 0 1434 180 19 86 chr4 175110599 175111016 -27217331 - L1MA8 LINE L1 -5 6286 5898 * 1522 177 97 6 chr4 175111005 175111316 -27217031 + L1MA8 LINE L1 5556 5894 -406 319 308 87 23 chr4 175111325 175111497 -27216850 - MIR SINE MIR -64 198 16 1481 235 49 25 chr4 175111534 175112223 -27216124 + Charlie2 DNA MER1_type 1988 2745 -117 468 297 59 25 chr4 175112225 175112427 -27215920 + MER63A DNA MER1_type 1 209 -1 362 269 38 62 chr4 175112624 175112718 -27215629 + MER5A DNA MER1_type 7 102 -81 2182 112 3 0 chr4 175112718 175113021 -27215326 + AluSp SINE Alu 1 304 -9 362 269 38 62 chr4 175113021 175113086 -27215261 + MER5A DNA MER1_type 102 167 -16 1512 205 69 24 chr4 175113461 175113837 -27214510 + MSTD LTR MaLR 1 393 -3 22 56 0 0 chr4 175115285 175115321 -27213026 + AT_rich Low_complexity Low_complexity 1 36 0 2055 125 0 31 chr4 175115955 175116274 -27212073 - AluSx SINE Alu -3 309 1 391 303 109 8 chr4 175117466 175117585 -27210762 + MIR SINE MIR 20 150 -112 250 255 67 27 chr4 175118153 175118302 -27210045 - L1ME3A LINE L1 -233 5937 5783 512 150 0 0 chr4 175118649 175118729 -27209618 - LTR23 LTR ERV1 -37 400 321 580 189 0 0 chr4 175119142 175119237 -27209110 - AluJb SINE Alu -195 117 23 443 133 0 12 chr4 175121090 175121173 -27207174 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 2201 131 0 3 chr4 175121239 175121552 -27206795 + AluSx SINE Alu 1 312 0 472 214 31 0 chr4 175121823 175121921 -27206426 - MIR SINE MIR -62 200 100 324 111 0 0 chr4 175123338 175123392 -27204955 + (CA)n Simple_repeat Simple_repeat 2 55 0 23 33 0 0 chr4 175123473 175123503 -27204844 + AT_rich Low_complexity Low_complexity 1 30 0 898 274 42 0 chr4 175124076 175124291 -27204056 + MER119 DNA MER1_type 3 226 -357 573 218 18 0 chr4 175124289 175124399 -27203948 + MER119 DNA MER1_type 472 583 0 * 799 235 85 5 chr4 175126036 175126236 -27202111 + MER58A DNA MER1_type 1 216 -8 449 81 81 0 chr4 175127718 175127792 -27200555 - MADE1 DNA Mariner 0 80 1 554 327 84 42 chr4 175127823 175128227 -27200120 - MLT1K LTR MaLR -158 430 10 357 160 90 10 chr4 175129098 175129198 -27199149 - Charlie7 DNA MER1_type -2469 143 36 214 406 32 8 chr4 175130309 175130432 -27197915 - L3b LINE CR1 -2 1581 1456 610 195 8 0 chr4 175130437 175130560 -27197787 + FLAM_C SINE Alu 17 140 -3 681 235 30 70 chr4 175130578 175130808 -27197539 + MLT1D LTR MaLR 1 221 -284 606 184 30 71 chr4 175130870 175131038 -27197309 + MLT1C LTR MaLR 6 166 -301 1148 159 0 0 chr4 175131039 175131209 -27197138 - AluSg/x SINE Alu -6 306 137 1150 188 24 90 chr4 175131213 175131548 -27196799 + MLT1C LTR MaLR 155 467 0 266 364 25 16 chr4 175131978 175132099 -27196248 - MER5A DNA MER1_type -7 182 61 324 320 0 47 chr4 175133179 175133329 -27195018 - L3 LINE CR1 -2 1575 1433 520 277 34 28 chr4 175133489 175133666 -27194681 + MIR SINE MIR 13 190 -72 1490 190 10 27 chr4 175133782 175134082 -27194265 + AluJo SINE Alu 7 301 -11 1963 125 11 0 chr4 175134440 175134760 -27193587 - AluSx SINE Alu 0 325 3 350 259 104 50 chr4 175134822 175135023 -27193324 - L2 LINE L2 -4 3309 3098 193 373 61 38 chr4 175135341 175135553 -27192794 - L2 LINE L2 -702 2612 2396 4079 118 24 3 chr4 175135655 175136288 -27192059 + L1PB3 LINE L1 5508 6153 -1 1795 158 27 3 chr4 175136455 175136747 -27191600 + AluSx SINE Alu 1 299 -13 376 296 28 57 chr4 175137131 175137307 -27191040 - L2 LINE L2 0 3313 3143 234 0 0 0 chr4 175138121 175138147 -27190200 + (CAA)n Simple_repeat Simple_repeat 2 27 0 183 235 62 37 chr4 175138270 175138351 -27189996 - L2 LINE L2 -1540 1774 1692 30 0 0 0 chr4 175139374 175139404 -27188943 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 175139513 175139535 -27188812 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr4 175139799 175139848 -27188499 + AT_rich Low_complexity Low_complexity 1 49 0 460 276 138 31 chr4 175140869 175141065 -27187282 + MIR SINE MIR 46 262 0 188 228 18 35 chr4 175142194 175142251 -27186096 + MIR SINE MIR 39 94 -114 21 36 0 0 chr4 175143385 175143413 -27184934 + AT_rich Low_complexity Low_complexity 1 28 0 2463 58 0 0 chr4 175143735 175144030 -27184317 - AluY SINE Alu -16 295 1 740 206 15 49 chr4 175144031 175144235 -27184112 + L2 LINE L2 2687 2883 -431 225 0 0 0 chr4 175144253 175144278 -27184069 + (T)n Simple_repeat Simple_repeat 1 25 0 580 315 7 0 chr4 175144744 175144893 -27183454 + MIR3 SINE MIR 35 184 -24 191 243 0 0 chr4 175144861 175144898 -27183449 + L3 LINE CR1 1526 1562 -15 * 4063 89 19 2 chr4 175144945 175145517 -27182830 - L1PA8 LINE L1 -4 6168 5587 1591 134 0 7 chr4 175145517 175145786 -27182561 + L1P LINE L1 5124 5390 -756 29 0 0 0 chr4 175145887 175145916 -27182431 + GC_rich Low_complexity Low_complexity 1 29 0 931 81 0 8 chr4 175147538 175147661 -27180686 + AluY SINE Alu 1 122 -189 2039 54 14 114 chr4 175147673 175148025 -27180322 + L1P2 LINE L1 5254 5570 -585 2161 104 3 23 chr4 175149039 175149346 -27179001 - AluSg SINE Alu -9 301 1 25 31 0 0 chr4 175149379 175149411 -27178936 + AT_rich Low_complexity Low_complexity 1 32 0 481 299 125 19 chr4 175149650 175150122 -27178225 - L1M4 LINE L1 -1094 5052 4531 24 32 0 0 chr4 175150139 175150170 -27178177 + AT_rich Low_complexity Low_complexity 1 31 0 289 265 82 116 chr4 175150249 175150388 -27177959 - HAL1 LINE L1 -1146 1361 1219 1869 155 3 7 chr4 175150388 175150691 -27177656 - AluSx SINE Alu -9 303 2 289 265 82 116 chr4 175150691 175151087 -27177260 - HAL1 LINE L1 -1288 1219 844 813 292 69 0 chr4 175151286 175151519 -27176828 + MIR SINE MIR 7 255 -7 2293 105 7 0 chr4 175151577 175151882 -27176465 - AluSc SINE Alu 0 309 3 232 271 68 53 chr4 175152327 175152460 -27175887 - L2 LINE L2 -1391 1923 1789 237 237 0 0 chr4 175152827 175152886 -27175461 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 387 320 67 17 chr4 175152957 175153135 -27175212 + MER5A DNA MER1_type 1 187 -2 1134 165 47 96 chr4 175158398 175158720 -27169627 - MER33 DNA MER1_type -2 322 17 2270 139 36 33 chr4 175158788 175159334 -27169013 - MLT2A2 LTR ERVL 0 554 3 319 227 15 0 chr4 175160050 175160116 -27168231 + L2 LINE L2 3246 3312 -1 2136 76 18 13 chr4 175162042 175162488 -27165859 - L1PA8 LINE L1 -602 5570 5122 4188 84 18 0 chr4 175162488 175163058 -27165289 + L1PA8 LINE L1 5587 6168 -4 191 243 0 0 chr4 175163105 175163142 -27165205 - L3 LINE CR1 -15 1562 1526 * 596 309 7 0 chr4 175163110 175163259 -27165088 - MIR3 SINE MIR -24 184 35 25 0 0 0 chr4 175164171 175164196 -27164151 + AT_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr4 175164390 175164420 -27163927 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr4 175164575 175164611 -27163736 + AT_rich Low_complexity Low_complexity 1 36 0 294 29 0 0 chr4 175165256 175165291 -27163056 + (CA)n Simple_repeat Simple_repeat 2 36 0 275 335 12 41 chr4 175166418 175166588 -27161759 + L3 LINE CR1 721 885 -692 242 258 342 0 chr4 175166608 175166728 -27161619 + L3 LINE CR1 1090 1250 -327 400 375 14 14 chr4 175167403 175167694 -27160653 + ERVL LTR ERVL 4853 5143 -621 2475 72 0 0 chr4 175167791 175168097 -27160250 + AluY SINE Alu 1 306 -5 819 288 126 51 chr4 175168303 175169006 -27159341 + L2 LINE L2 2540 3313 0 1079 201 89 3 chr4 175170121 175170560 -27157787 + MLT1D LTR MaLR 1 505 0 22 0 0 0 chr4 175171371 175171393 -27156954 + AT_rich Low_complexity Low_complexity 1 22 0 2398 71 3 0 chr4 175171874 175172169 -27156178 - AluY SINE Alu -15 296 1 23 0 0 0 chr4 175172271 175172294 -27156053 + AT_rich Low_complexity Low_complexity 1 23 0 205 256 0 0 chr4 175173666 175173705 -27154642 + polypyrimidine Low_complexity Low_complexity 2 40 0 30 0 0 0 chr4 175174034 175174064 -27154283 + AT_rich Low_complexity Low_complexity 1 30 0 1866 122 7 7 chr4 175174066 175174337 -27154010 - AluSq SINE Alu -20 293 23 242 304 44 52 chr4 175174447 175174582 -27153765 - MIR3 SINE MIR -13 195 62 2465 64 0 6 chr4 175174826 175175137 -27153210 + AluY SINE Alu 1 309 -2 2143 233 81 11 chr4 175176016 175176831 -27151516 + L1ME2 LINE L1 5053 5921 -243 1030 217 124 7 chr4 175177194 175177493 -27150854 - MER46C DNA MER2_type -4 334 1 211 326 136 18 chr4 175178043 175178258 -27150089 + MIR SINE MIR 3 239 -23 198 368 13 13 chr4 175179193 175179269 -27149078 - L2 LINE L2 -74 3198 3123 819 98 5 0 chr4 175179566 175179701 -27148646 - L1P5 LINE L1 -330 5821 5684 428 332 136 60 chr4 175179827 175180709 -27147638 + L2 LINE L2 994 1942 -1372 664 288 41 33 chr4 175180756 175180999 -27147348 + MIR SINE MIR 3 247 -15 211 221 29 15 chr4 175181015 175181083 -27147264 + L2 LINE L2 1978 2046 -1268 483 326 62 23 chr4 175181439 175181746 -27146601 + ERVL LTR ERVL 851 1169 -4595 501 309 59 50 chr4 175181803 175182143 -27146204 + L2 LINE L2 2176 2518 -796 1216 306 108 7 chr4 175182145 175182700 -27145647 + L2 LINE L2 557 1167 -2147 941 315 52 33 chr4 175182717 175183143 -27145204 + MLT1J1 LTR MaLR 6 439 -7 377 264 136 14 chr4 175183173 175183313 -27145034 + L2 LINE L2 1199 1355 -1959 332 213 372 32 chr4 175183318 175183506 -27144841 + L2 LINE L2 2503 2754 -560 425 265 171 23 chr4 175183506 175183775 -27144572 - LTR50 LTR ERVL -1 662 297 274 189 318 45 chr4 175183842 175183974 -27144373 - LTR50 LTR ERVL -571 224 57 1237 276 66 6 chr4 175184255 175184603 -27143744 - MLT1H LTR MaLR -118 431 63 198 310 134 29 chr4 175184689 175184860 -27143487 - L2 LINE L2 -519 2795 2607 548 311 117 61 chr4 175184975 175185827 -27142520 - ERVL LTR ERVL -4015 1749 850 344 258 62 51 chr4 175186430 175186608 -27141739 - LTR33A LTR ERVL -18 505 326 439 249 261 6 chr4 175186759 175186924 -27141423 - LTR50 LTR ERVL -588 207 1 722 285 108 4 chr4 175186924 175187321 -27141026 + L2 LINE L2 2749 3180 -133 216 0 0 0 chr4 175187327 175187351 -27140996 + (TA)n Simple_repeat Simple_repeat 1 24 0 2150 123 0 0 chr4 175187351 175187644 -27140703 - AluSx SINE Alu -13 299 7 1038 94 0 7 chr4 175187649 175187787 -27140560 - AluSq/x SINE Alu -176 137 1 592 258 18 12 chr4 175187788 175187955 -27140392 + L2 LINE L2 3146 3313 0 222 339 66 8 chr4 175187957 175188078 -27140269 + L2 LINE L2 2568 2695 -619 439 263 169 63 chr4 175190472 175190803 -27137544 - MLT1J LTR MaLR -144 367 2 569 238 361 5 chr4 175191755 175192179 -27136168 - LTR50 LTR ERVL -123 672 98 386 161 103 0 chr4 175192577 175192664 -27135683 - LTR50 LTR ERVL -699 96 1 294 261 14 0 chr4 175192715 175192784 -27135563 + L2 LINE L2 3243 3312 -1 307 328 30 66 chr4 175192923 175193021 -27135326 + MIR SINE MIR 59 148 -114 2200 117 0 0 chr4 175193021 175193319 -27135028 - AluSx SINE Alu -14 298 1 307 328 30 66 chr4 175193319 175193418 -27134929 + MIR SINE MIR 148 249 -13 904 257 36 32 chr4 175193508 175193757 -27134590 - MIR SINE MIR 0 262 13 631 236 115 59 chr4 175194589 175195029 -27133318 - L1ME LINE L1 -338 5783 5296 2140 119 0 0 chr4 175195029 175195323 -27133024 + AluSc SINE Alu 15 308 -1 631 236 115 59 chr4 175195323 175195365 -27132982 - L1ME LINE L1 -825 5296 5258 449 311 120 23 chr4 175195704 175196003 -27132344 + L2 LINE L2 2982 3309 -4 1257 178 44 38 chr4 175196342 175196525 -27131822 + MER33 DNA MER1_type 1 188 -2397 2358 73 0 29 chr4 175196525 175196838 -27131509 - AluY SINE Alu -7 304 1 1257 178 44 38 chr4 175196838 175196974 -27131373 + MER33 DNA MER1_type 188 322 -2 23 33 0 0 chr4 175198136 175198166 -27130181 + AT_rich Low_complexity Low_complexity 1 30 0 418 333 0 8 chr4 175199958 175200084 -27128263 + L2 LINE L2 3189 3313 0 990 132 64 112 chr4 175202079 175202314 -27126033 + L1MA9 LINE L1 6032 6252 -60 2112 129 0 0 chr4 175202314 175202601 -27125746 - AluSx SINE Alu -25 287 1 990 132 64 112 chr4 175202601 175202660 -27125687 + L1MA9 LINE L1 6252 6312 0 24 32 0 0 chr4 175203084 175203115 -27125232 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr4 175203194 175203219 -27125128 + AT_rich Low_complexity Low_complexity 1 25 0 1669 184 7 26 chr4 175203474 175203783 -27124564 - AluJo SINE Alu -9 303 1 448 286 164 0 chr4 175204055 175204304 -27124043 - L1MB5 LINE L1 -274 5900 5616 1602 106 140 0 chr4 175204319 175204584 -27123763 - AluSx SINE Alu 0 302 1 400 263 82 21 chr4 175204631 175204825 -27123522 - L1MB5 LINE L1 -648 5522 5317 558 106 0 0 chr4 175206528 175206622 -27121725 + L1MA4A LINE L1 6210 6303 0 346 287 11 0 chr4 175206648 175206735 -27121612 + MIR SINE MIR 63 150 -112 244 364 34 0 chr4 175206954 175207042 -27121305 - MIR3 SINE MIR -4 204 114 242 302 0 0 chr4 175207371 175207424 -27120923 - MIR SINE MIR -133 75 23 232 229 40 40 chr4 175207647 175207737 -27120610 + MIR SINE MIR 106 191 -61 1729 265 97 5 chr4 175207953 175208305 -27120042 + L2 LINE L2 2073 2496 -818 2135 99 35 0 chr4 175208305 175208589 -27119758 - AluSx SINE Alu -6 306 13 1729 265 97 5 chr4 175208589 175208795 -27119552 + L2 LINE L2 2496 2682 -632 1823 146 37 14 chr4 175208914 175209208 -27119139 - AluJb SINE Alu -11 301 1 367 348 72 7 chr4 175209251 175209389 -27118958 + MIR SINE MIR 32 178 -84 2101 114 3 0 chr4 175209491 175209780 -27118567 + AluSq SINE Alu 9 298 -15 655 312 61 4 chr4 175210821 175211068 -27117279 + MIR SINE MIR 2 262 0 663 198 84 101 chr4 175211083 175211310 -27117037 - MER58A DNA MER1_type -1 223 1 1393 216 36 107 chr4 175211996 175212622 -27115725 - L1ME LINE L1 -390 5776 5192 16151 123 15 117 chr4 175213376 175216947 -27111400 - L1P LINE L1 -2928 3218 13 362 127 0 0 chr4 175216961 175217016 -27111331 + L1M4 LINE L1 4891 4945 -1201 1175 220 42 88 chr4 175218200 175218509 -27109838 - MLT1B LTR MaLR 0 390 103 536 209 91 9 chr4 175218509 175218619 -27109728 + FLAM_A SINE Alu 2 120 -13 1175 220 42 88 chr4 175218619 175218718 -27109629 - MLT1B LTR MaLR -287 103 1 432 318 208 5 chr4 175218911 175219103 -27109244 + MIR SINE MIR 32 262 0 255 322 223 17 chr4 175221745 175221921 -27106426 - MIR SINE MIR -52 210 3 985 108 7 7 chr4 175222248 175222387 -27105960 - AluJo SINE Alu -169 143 5 30 59 0 0 chr4 175223643 175223694 -27104653 + AT_rich Low_complexity Low_complexity 1 51 0 372 103 0 0 chr4 175223973 175224031 -27104316 + (CA)n Simple_repeat Simple_repeat 2 59 0 333 322 26 33 chr4 175224333 175224485 -27103862 + MIR SINE MIR 78 228 -34 898 110 0 0 chr4 175225121 175225248 -27103099 + AluSg/x SINE Alu 177 303 -9 21 82 0 0 chr4 175225481 175225530 -27102817 + AT_rich Low_complexity Low_complexity 1 49 0 2138 107 7 0 chr4 175226525 175226815 -27101532 + AluSp SINE Alu 3 294 -19 1632 139 74 45 chr4 175227722 175228074 -27100273 + L1MA4 LINE L1 5934 6295 -5 1515 188 4 18 chr4 175228641 175228917 -27099430 - AluJo SINE Alu -23 289 18 215 229 73 0 chr4 175229034 175229130 -27099217 + (CATATA)n Simple_repeat Simple_repeat 6 108 0 2335 115 120 5 chr4 175229538 175229922 -27098425 - MSTA LTR MaLR 0 428 1 26 30 0 0 chr4 175230010 175230043 -27098304 + AT_rich Low_complexity Low_complexity 1 33 0 299 24 0 24 chr4 175230986 175231027 -27097320 + (CA)n Simple_repeat Simple_repeat 1 40 0 274 196 76 22 chr4 175231976 175232068 -27096279 + MER94 DNA DNA 38 134 0 388 323 0 24 chr4 175232912 175233039 -27095308 + MIR3 SINE MIR 76 199 -9 2128 112 0 45 chr4 175233972 175234285 -27094062 + AluSg SINE Alu 1 299 -11 309 258 133 13 chr4 175235727 175235878 -27092469 + L1 LINE L1 4370 4538 -1608 24 0 0 0 chr4 175235918 175235942 -27092405 + AT_rich Low_complexity Low_complexity 1 24 0 1871 142 46 19 chr4 175236091 175236416 -27091931 - MER1B DNA MER1_type 0 337 4 278 67 22 0 chr4 175236416 175236461 -27091886 + (TA)n Simple_repeat Simple_repeat 1 46 0 34 0 0 0 chr4 175236467 175236501 -27091846 + AT_rich Low_complexity Low_complexity 1 34 0 2258 84 0 0 chr4 175236516 175236802 -27091545 - AluSx SINE Alu -26 286 1 875 148 35 0 chr4 175237328 175237507 -27090840 + AluSq SINE Alu 140 323 0 248 109 0 22 chr4 175237901 175237947 -27090400 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 27 29 0 0 chr4 175238155 175238189 -27090158 + AT_rich Low_complexity Low_complexity 1 34 0 24 35 0 53 chr4 175238253 175238310 -27090037 + AT_rich Low_complexity Low_complexity 1 54 0 1855 72 16 100 chr4 175238403 175238723 -27089624 + AluSg SINE Alu 1 293 -17 1276 161 20 98 chr4 175238903 175239250 -27089097 - MER33 DNA MER1_type 0 324 5 237 292 107 12 chr4 175239479 175239647 -27088700 + LTR67 LTR ERVL 373 556 -1 185 250 53 79 chr4 175241153 175241229 -27087118 + MER5A DNA MER1_type 52 125 -64 240 153 31 41 chr4 175241690 175241788 -27086559 + GA-rich Low_complexity Low_complexity 2 98 0 206 103 69 17 chr4 175242186 175242244 -27086103 + (TA)n Simple_repeat Simple_repeat 1 61 0 2239 85 3 0 chr4 175242853 175243136 -27085211 - AluSp SINE Alu -4 309 26 275 0 0 28 chr4 175245099 175245135 -27083212 + (TTTAA)n Simple_repeat Simple_repeat 1 35 0 222 37 0 0 chr4 175246209 175246236 -27082111 + (T)n Simple_repeat Simple_repeat 1 27 0 189 0 0 0 chr4 175247374 175247395 -27080952 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 21 36 0 0 chr4 175248215 175248243 -27080104 + AT_rich Low_complexity Low_complexity 1 28 0 324 0 0 0 chr4 175248497 175248533 -27079814 + (TG)n Simple_repeat Simple_repeat 1 36 0 464 304 106 31 chr4 175248608 175248859 -27079488 - MIR SINE MIR 0 262 1 529 307 32 37 chr4 175249031 175249249 -27079098 - MIR SINE MIR -26 236 20 228 268 36 0 chr4 175249925 175249981 -27078366 + MER113 DNA MER1_type? 464 521 0 21 0 0 0 chr4 175250840 175250861 -27077486 + AT_rich Low_complexity Low_complexity 1 21 0 387 0 0 0 chr4 175251743 175251786 -27076561 + (TG)n Simple_repeat Simple_repeat 2 44 0 23 54 0 0 chr4 175253165 175253202 -27075145 + GC_rich Low_complexity Low_complexity 1 37 0 183 156 0 0 chr4 175253841 175253873 -27074474 + CT-rich Low_complexity Low_complexity 1 32 0 357 322 64 0 chr4 175256254 175256410 -27071937 - MIR SINE MIR -60 148 4 281 190 0 40 chr4 175257339 175257439 -27070908 + CT-rich Low_complexity Low_complexity 3 98 0 1721 145 35 53 chr4 175258568 175258886 -27069461 - AluJb SINE Alu 0 312 1 1972 77 8 0 chr4 175260440 175260687 -27067660 - AluSp SINE Alu -22 291 43 548 305 84 34 chr4 175261190 175261419 -27066928 + MIR SINE MIR 3 241 -21 22 0 0 0 chr4 175262173 175262195 -27066152 + AT_rich Low_complexity Low_complexity 1 22 0 2149 123 0 0 chr4 175262365 175262650 -27065697 + AluSx SINE Alu 1 285 -27 33 25 0 0 chr4 175262650 175262690 -27065657 + AT_rich Low_complexity Low_complexity 1 40 0 190 346 181 0 chr4 175262965 175263098 -27065249 + MIR3 SINE MIR 31 187 -21 187 310 70 31 chr4 175263986 175264115 -27064232 + MIR SINE MIR 20 153 -109 1022 215 154 0 chr4 175264346 175264644 -27063703 + MER2 DNA MER2_type 1 344 0 180 282 0 0 chr4 175264681 175264720 -27063627 - L2 LINE L2 -228 3044 3006 198 71 0 0 chr4 175265226 175265254 -27063093 + (GAAAA)n Simple_repeat Simple_repeat 4 31 0 852 286 91 16 chr4 175265432 175266051 -27062296 - L1M4 LINE L1 -1441 4705 4041 332 326 29 0 chr4 175266104 175266276 -27062071 - L1M4 LINE L1 -2231 3915 3739 473 324 82 75 chr4 175266385 175266960 -27061387 - L1MEd LINE L1 -5538 581 3 2701 94 11 11 chr4 175267715 175268088 -27060259 - THE1C LTR MaLR -2 373 1 9555 123 19 55 chr4 175268088 175269727 -27058620 - THE1C-int LTR MaLR 0 1580 1 2361 119 24 14 chr4 175269727 175270098 -27058249 - THE1C LTR MaLR 0 375 1 2320 248 51 47 chr4 175271017 175271788 -27056559 + L1MEc LINE L1 204 977 -5586 917 313 13 40 chr4 175271920 175272396 -27055951 + L1MEc LINE L1 1277 1739 -4645 737 232 26 5 chr4 175272456 175272650 -27055697 - L1M4 LINE L1 -2029 4117 3920 353 22 22 0 chr4 175272654 175272700 -27055647 + (TG)n Simple_repeat Simple_repeat 1 47 0 30 45 0 0 chr4 175272745 175272789 -27055558 + AT_rich Low_complexity Low_complexity 1 44 0 2028 271 21 44 chr4 175272953 175273745 -27054602 + L1M4 LINE L1 4127 4900 -1246 14461 91 17 7 chr4 175273745 175274287 -27054060 - L1PA7 LINE L1 0 6154 5619 2239 114 0 3 chr4 175274287 175274594 -27053753 - AluY SINE Alu -5 306 1 14461 91 17 7 chr4 175274594 175276935 -27051412 - L1PA7 LINE L1 -535 5619 3259 875 260 61 14 chr4 175277161 175277457 -27050890 - L1ME3A LINE L1 -333 5837 5528 437 291 103 71 chr4 175277588 175277764 -27050583 - L1ME3A LINE L1 -840 5306 5137 14804 132 8 35 chr4 175277764 175280245 -27048102 - Tigger1 DNA MER2_type -1 2417 2 437 291 103 71 chr4 175280245 175282175 -27046172 - L1ME3A LINE L1 -1009 5137 3132 755 304 61 34 chr4 175282232 175283054 -27045293 - L1ME3A LINE L1 -3092 3054 2211 2040 277 110 36 chr4 175283575 175284487 -27043860 - L2 LINE L2 -623 2691 1713 1106 222 57 8 chr4 175284493 175284805 -27043542 + MER33 DNA MER1_type 1 323 -1 3254 113 156 133 chr4 175284823 175286233 -27042114 - pTR5 LTR ERV1 -1 2605 1524 23 0 0 0 chr4 175287221 175287244 -27041103 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr4 175287585 175287614 -27040733 + AT_rich Low_complexity Low_complexity 1 29 0 336 213 73 12 chr4 175287671 175287835 -27040512 + (TA)n Simple_repeat Simple_repeat 2 175 0 453 208 38 69 chr4 175290082 175290241 -27038106 - MER103 DNA DNA 0 166 13 25 65 0 0 chr4 175290404 175290450 -27037897 + AT_rich Low_complexity Low_complexity 1 46 0 26 0 0 0 chr4 175290567 175290593 -27037754 + AT_rich Low_complexity Low_complexity 1 26 0 206 294 29 0 chr4 175291439 175291507 -27036840 - MIR SINE MIR -3 259 190 21 0 0 0 chr4 175291569 175291590 -27036757 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 175292153 175292183 -27036164 + AT_rich Low_complexity Low_complexity 1 30 0 299 266 63 0 chr4 175292407 175292486 -27035861 + LTR29 LTR ERV1 4 87 -535 * 1175 242 60 47 chr4 175292463 175292914 -27035433 + MER39 LTR ERV1 251 707 0 569 273 166 17 chr4 175292944 175293299 -27035048 + L1ME LINE L1 5358 5765 -356 875 241 102 15 chr4 175293831 175294155 -27034192 + LTR37A LTR ERV1 75 426 0 2418 132 71 24 chr4 175294723 175294771 -27033576 - MSTA LTR MaLR 0 428 384 2742 76 3 0 chr4 175294771 175295125 -27033222 + THE1A LTR MaLR 1 355 0 2418 132 71 24 chr4 175295125 175295485 -27032862 - MSTA LTR MaLR -44 384 1 200 33 0 33 chr4 175295836 175295866 -27032481 + (TAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr4 175295914 175295935 -27032412 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 175296012 175296040 -27032307 + AT_rich Low_complexity Low_complexity 1 28 0 201 74 0 0 chr4 175296368 175296395 -27031952 + (CA)n Simple_repeat Simple_repeat 1 27 0 186 43 0 0 chr4 175296428 175296451 -27031896 + (TTA)n Simple_repeat Simple_repeat 2 24 0 240 35 0 0 chr4 175297129 175297158 -27031189 + (CA)n Simple_repeat Simple_repeat 2 30 0 2266 102 3 0 chr4 175298148 175298442 -27029905 - AluSx SINE Alu -17 295 1 300 237 65 21 chr4 175298975 175299068 -27029279 - MIR SINE MIR -65 143 47 887 204 71 0 chr4 175300317 175300513 -27027834 - MER58A DNA MER1_type -4 220 11 241 328 76 38 chr4 175300756 175300887 -27027460 - MIR SINE MIR -109 153 18 388 102 63 24 chr4 175302191 175302225 -27026122 + L1P2 LINE L1 5644 5675 -479 1056 102 0 0 chr4 175302225 175302372 -27025975 - L1PA7 LINE L1 -15 6139 5993 388 102 63 24 chr4 175302372 175302430 -27025917 + L1P2 LINE L1 5675 5735 -419 3828 119 7 20 chr4 175302464 175302920 -27025427 + L1PA11 LINE L1 4877 5338 -836 886 163 12 0 chr4 175302920 175303073 -27025274 + L1PB1 LINE L1 5989 6150 -1 3828 119 7 20 chr4 175303073 175303579 -27024768 + L1PA11 LINE L1 5338 5832 -342 279 270 79 53 chr4 175303954 175304295 -27024052 - L1M4 LINE L1 -2921 3225 2876 247 298 19 0 chr4 175304434 175304538 -27023809 - L1M4 LINE L1 -3319 2827 2722 303 161 0 0 chr4 175304585 175304641 -27023706 + (CA)n Simple_repeat Simple_repeat 2 57 0 1132 133 12 0 chr4 175304729 175304902 -27023445 - L1P3 LINE L1 -554 5600 5426 740 111 0 0 chr4 175304900 175305008 -27023339 + L1PB1 LINE L1 6022 6129 -22 * 1028 129 0 7 chr4 175305043 175305190 -27023157 + AluSx SINE Alu 1 146 -166 41712 61 3 1 chr4 175305194 175311321 -27017026 + L1PA5 LINE L1 11 6150 -4 1027 165 0 31 chr4 175311328 175311522 -27016825 + AluSx SINE Alu 125 312 0 238 114 0 23 chr4 175311528 175311572 -27016775 + L1P LINE L1 5325 5367 -801 2149 117 50 34 chr4 175312086 175312444 -27015903 + THE1B LTR MaLR 1 364 0 236 305 12 0 chr4 175313236 175313318 -27015029 - L1MEd LINE L1 -6035 84 2 1153 193 138 20 chr4 175317605 175317910 -27010437 + MER2 DNA MER2_type 5 345 0 267 332 81 43 chr4 175317982 175318193 -27010154 + L2 LINE L2 2865 3083 -189 2013 147 53 6 chr4 175318213 175318573 -27009774 - L1PA15 LINE L1 0 6165 5789 2259 104 0 0 chr4 175318651 175318948 -27009399 + AluSg1 SINE Alu 1 297 -12 378 305 67 0 chr4 175319121 175319226 -27009121 - L2 LINE L2 0 3313 3202 211 333 93 0 chr4 175319254 175319329 -27009018 + MIR3 SINE MIR 116 197 -11 849 60 0 17 chr4 175319880 175319996 -27008351 - L1PA5 LINE L1 0 6154 6041 1479 181 21 18 chr4 175321144 175321465 -27006882 - AluJo SINE Alu 0 322 1 25 31 0 0 chr4 175322926 175322958 -27005389 + AT_rich Low_complexity Low_complexity 1 32 0 1902 89 32 32 chr4 175323334 175323616 -27004731 - AluY SINE Alu -26 285 4 1954 112 44 14 chr4 175324431 175324726 -27003621 - AluSc SINE Alu -5 304 1 235 305 195 8 chr4 175325668 175325796 -27002551 - MIR SINE MIR 0 262 111 189 0 0 0 chr4 175326036 175326057 -27002290 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 328 323 25 6 chr4 175327537 175327695 -27000652 + GA-rich Low_complexity Low_complexity 1 161 0 255 329 80 22 chr4 175328385 175328522 -26999825 + MIR SINE MIR 88 232 -30 1193 139 0 0 chr4 175329168 175329340 -26999007 - AluY SINE Alu -139 172 1 202 120 20 40 chr4 175329354 175329404 -26998943 + (TTATA)n Simple_repeat Simple_repeat 2 50 0 858 150 88 47 chr4 175329676 175329831 -26998516 + MLT1A1 LTR MaLR 1 167 -198 2338 90 3 0 chr4 175329831 175330132 -26998215 + AluSq SINE Alu 1 302 -11 858 150 88 47 chr4 175330132 175330169 -26998178 + MLT1A1 LTR MaLR 167 201 -164 25 0 0 0 chr4 175330835 175330860 -26997487 + AT_rich Low_complexity Low_complexity 1 25 0 195 179 179 0 chr4 175331075 175331131 -26997216 - MIR SINE MIR -161 101 36 251 316 41 20 chr4 175331272 175331370 -26996977 + L2 LINE L2 3173 3272 0 48 53 0 0 chr4 175331520 175331596 -26996751 + AT_rich Low_complexity Low_complexity 1 76 0 28 0 0 0 chr4 175331666 175331694 -26996653 + AT_rich Low_complexity Low_complexity 1 28 0 1099 150 19 21 chr4 175331900 175332373 -26995974 - L1MB2 LINE L1 -4 6167 5586 203 200 0 0 chr4 175333085 175333120 -26995227 + T-rich Low_complexity Low_complexity 1 35 0 494 152 11 0 chr4 175333121 175333213 -26995134 + CT-rich Low_complexity Low_complexity 3 95 0 22 35 0 0 chr4 175333824 175333853 -26994494 + AT_rich Low_complexity Low_complexity 1 29 0 9229 222 22 24 chr4 175334004 175335974 -26992373 - L1PA12 LINE L1 -1535 5262 3289 8344 27 2 2 chr4 175335974 175337734 -26990613 + L1PA3 LINE L1 4395 6155 0 1041 161 0 10 chr4 175337740 175337932 -26990415 + L1PB1 LINE L1 5959 6148 -3 9229 222 22 24 chr4 175337932 175338556 -26989791 - L1PA12 LINE L1 -3513 3284 2667 4625 51 15 50 chr4 175338556 175339621 -26988726 + MER11A LTR ERVK 1 1266 0 3606 224 48 38 chr4 175339623 175340793 -26987554 - L1PA12 LINE L1 -4127 2670 1509 201 39 0 0 chr4 175341789 175341815 -26986532 + (TA)n Simple_repeat Simple_repeat 2 27 0 22 35 0 0 chr4 175342616 175342645 -26985702 + AT_rich Low_complexity Low_complexity 1 29 0 3404 243 54 28 chr4 175344151 175345578 -26982769 - L1M2 LINE L1 -2610 4238 2772 1734 167 75 29 chr4 175345580 175345928 -26982419 + THE1B LTR MaLR 1 364 0 1781 262 55 40 chr4 175345930 175346553 -26981794 - MLT1E2 LTR MaLR 0 626 1 969 243 22 113 chr4 175346553 175346635 -26981712 - MLT1E2-int LTR MaLR 0 1371 1283 2146 147 120 0 chr4 175346635 175347017 -26981330 + MSTC LTR MaLR 1 428 0 969 243 22 113 chr4 175347017 175347386 -26980961 - MLT1E2-int LTR MaLR -88 1283 961 569 293 61 0 chr4 175347512 175347693 -26980654 - MLT1E2-int LTR MaLR -484 887 696 615 189 21 121 chr4 175347844 175348034 -26980313 - MLT1E2-int LTR MaLR -726 645 475 962 222 59 90 chr4 175348034 175348428 -26979919 + MLT1B LTR MaLR 1 504 -1 812 226 60 2 chr4 175348430 175348748 -26979599 - MLT1E2-int LTR MaLR -905 466 15 1624 178 10 24 chr4 175348807 175349100 -26979247 + AluJb SINE Alu 4 292 -20 1592 220 100 52 chr4 175349106 175349688 -26978659 - MLT1E2 LTR MaLR -35 590 1 342 0 0 0 chr4 175350390 175350428 -26977919 + (T)n Simple_repeat Simple_repeat 1 38 0 185 219 49 0 chr4 175350775 175350816 -26977531 + MIR SINE MIR 220 262 0 422 339 73 6 chr4 175351562 175351739 -26976608 + L3b LINE CR1 1301 1489 -94 24 0 0 0 chr4 175353016 175353040 -26975307 + AT_rich Low_complexity Low_complexity 1 24 0 280 301 176 29 chr4 175353147 175353419 -26974928 - MLT1I LTR MaLR -60 349 38 349 182 83 45 chr4 175353525 175353657 -26974690 - L1ME4a LINE L1 -203 5918 5782 186 43 0 0 chr4 175353740 175353763 -26974584 + (TTG)n Simple_repeat Simple_repeat 2 24 0 433 282 144 21 chr4 175354227 175354511 -26973836 + MLT1L LTR MaLR 8 326 -289 415 285 54 29 chr4 175354493 175354772 -26973575 + MLT1L LTR MaLR 235 615 0 * 1885 94 66 0 chr4 175355260 175355516 -26972831 + AluSx SINE Alu 8 280 -32 672 48 0 0 chr4 175355516 175355600 -26972747 + (GAAA)n Simple_repeat Simple_repeat 3 86 0 813 278 81 64 chr4 175356257 175356332 -26972015 + L1ME1 LINE L1 626 698 -5612 1721 153 54 24 chr4 175356332 175356704 -26971643 + L1MA5A LINE L1 5911 6293 -4 813 278 81 64 chr4 175356704 175356812 -26971535 + L1ME1 LINE L1 698 803 -5507 1494 204 88 55 chr4 175356812 175357301 -26971046 - MLT1D LTR MaLR 0 505 1 813 278 81 64 chr4 175357301 175358143 -26970204 + L1ME1 LINE L1 803 1718 -4592 449 179 54 175 chr4 175358556 175358762 -26969585 - MLT1F LTR MaLR -9 533 379 * 747 244 142 4 chr4 175358745 175358970 -26969377 - MLT1F LTR MaLR -286 256 1 585 313 88 24 chr4 175358972 175359761 -26968586 + L1ME1 LINE L1 2276 3114 -3015 24 53 0 0 chr4 175359885 175359923 -26968424 + AT_rich Low_complexity Low_complexity 1 38 0 1746 300 90 42 chr4 175359939 175361993 -26966354 + L1ME1 LINE L1 3360 5502 -645 1610 94 140 0 chr4 175362044 175362309 -26966038 + AluSx SINE Alu 1 302 0 468 282 164 0 chr4 175362324 175362573 -26965774 + L1ME1 LINE L1 5599 5883 -274 257 300 91 9 chr4 175362734 175362844 -26965503 + L2 LINE L2 1784 1902 -1412 838 343 160 10 chr4 175362884 175363693 -26964654 + L2 LINE L2 2029 2982 -290 234 324 56 28 chr4 175363712 175363820 -26964527 - L2 LINE L2 -24 3289 3179 22 0 0 0 chr4 175364584 175364606 -26963741 + AT_rich Low_complexity Low_complexity 1 22 0 328 267 76 8 chr4 175365266 175365397 -26962950 - MIR SINE MIR -49 213 74 203 242 16 16 chr4 175365400 175365462 -26962885 + (TA)n Simple_repeat Simple_repeat 2 63 0 320 341 29 92 chr4 175365559 175365873 -26962474 - L2 LINE L2 -115 3157 2864 317 177 168 35 chr4 175365951 175366064 -26962283 + MIR SINE MIR 91 218 -44 193 343 0 0 chr4 175366113 175366180 -26962167 - MIR SINE MIR -150 112 46 699 300 142 51 chr4 175368338 175369257 -26959090 + HAL1 LINE L1 163 1164 -1343 418 223 187 18 chr4 175369264 175369430 -26958917 + L1ME1 LINE L1 5919 6112 -37 859 275 48 25 chr4 175369453 175369850 -26958497 + HAL1 LINE L1 1164 1569 -938 36 70 0 0 chr4 175370022 175370093 -26958254 + AT_rich Low_complexity Low_complexity 1 71 0 361 297 81 62 chr4 175370225 175370545 -26957802 + HAL1b LINE L1 478 803 -545 664 220 159 4 chr4 175370844 175371076 -26957271 + L1MDa LINE L1 2011 2278 -4262 838 126 0 0 chr4 175371089 175371216 -26957131 - AluSg/x SINE Alu -13 297 171 281 331 180 12 chr4 175371344 175371516 -26956831 + MIR SINE MIR 20 220 -42 2224 87 0 51 chr4 175372254 175372565 -26955782 + AluSq SINE Alu 1 295 -18 2359 80 3 7 chr4 175374831 175375132 -26953215 - AluY SINE Alu -11 300 1 283 311 118 8 chr4 175375497 175375616 -26952731 + MIR SINE MIR 131 262 0 580 197 0 43 chr4 175375933 175376050 -26952297 - MER58B DNA MER1_type 0 341 230 1920 102 0 8 chr4 175377016 175377272 -26951075 - AluSc SINE Alu -15 294 41 557 326 78 56 chr4 175378005 175378364 -26949983 + L2 LINE L2 2904 3270 -2 198 307 171 0 chr4 175378393 175378481 -26949866 - MIR3 SINE MIR -27 181 79 215 125 25 0 chr4 175378621 175378661 -26949686 + GA-rich Low_complexity Low_complexity 5 45 0 1122 192 5 14 chr4 175378709 175378923 -26949424 - MER20 DNA MER1_type -7 212 1 15111 133 17 5 chr4 175380445 175382833 -26945514 - Tigger1 DNA MER2_type 0 2418 3 2429 73 0 22 chr4 175382833 175383146 -26945201 + AluY SINE Alu 1 306 -5 233 243 78 39 chr4 175385294 175385397 -26942950 - MIR SINE MIR 0 262 156 23 110 0 0 chr4 175386989 175387089 -26941258 + AT_rich Low_complexity Low_complexity 1 100 0 1978 153 3 6 chr4 175387114 175387427 -26940920 - AluJb SINE Alu 0 312 1 562 299 7 19 chr4 175387990 175388144 -26940203 - MER5B DNA MER1_type -24 154 3 23 33 0 0 chr4 175388927 175388957 -26939390 + AT_rich Low_complexity Low_complexity 1 30 0 519 247 6 38 chr4 175389052 175389210 -26939137 - MIR SINE MIR -89 173 21 234 250 0 19 chr4 175389797 175389849 -26938498 + MIR3 SINE MIR 110 160 -48 243 297 18 73 chr4 175389871 175390090 -26938257 - L1MC4 LINE L1 -4 8038 7832 273 212 188 0 chr4 175390121 175390206 -26938141 - L1ME2 LINE L1 -21 6143 6043 271 317 10 19 chr4 175390880 175390984 -26937363 + MIR3 SINE MIR 62 164 -44 1352 264 102 23 chr4 175391556 175391995 -26936352 + LTR40a LTR ERVL 1 474 -45 1592 185 7 32 chr4 175392487 175392795 -26935552 - AluJb SINE Alu -12 300 1 201 368 32 24 chr4 175393930 175394055 -26934292 - MER5A DNA MER1_type -35 154 29 * 227 358 25 17 chr4 175393948 175394068 -26934279 + MER5A DNA MER1_type 64 184 -5 2175 63 0 0 chr4 175394382 175394659 -26933688 + AluY SINE Alu 31 307 0 1217 99 6 6 chr4 175395040 175395221 -26933126 + L1MA4A LINE L1 5709 5889 -414 272 133 0 18 chr4 175396960 175397024 -26931323 + L1 LINE L1 4972 5031 -1115 * 544 157 9 17 chr4 175397015 175397130 -26931217 + L1 LINE L1 3883 3996 -2150 * 4658 168 38 31 chr4 175397112 175397993 -26930354 + L1PA16 LINE L1 5010 5903 -263 1750 126 4 0 chr4 175397993 175398240 -26930107 + AluSx SINE Alu 61 308 -4 4658 168 38 31 chr4 175398240 175398504 -26929843 + L1PA16 LINE L1 5903 6164 -2 360 242 178 51 chr4 175399297 175399454 -26928893 + MIR SINE MIR 10 186 -76 214 282 159 55 chr4 175399613 175399776 -26928571 + MIR SINE MIR 9 188 -74 1216 215 3 50 chr4 175399800 175400149 -26928198 + AluJo SINE Alu 1 335 0 28 29 0 0 chr4 175400184 175400219 -26928128 + AT_rich Low_complexity Low_complexity 1 35 0 2329 104 0 0 chr4 175401060 175401359 -26926988 + AluSg1 SINE Alu 3 301 -8 223 354 111 14 chr4 175401495 175401655 -26926692 - MER5A DNA MER1_type -7 171 7 5613 142 48 30 chr4 175401673 175402724 -26925623 - MER11C LTR ERVK 0 1071 1 220 254 289 9 chr4 175403124 175403238 -26925109 + MIR SINE MIR 45 190 -72 21 71 0 0 chr4 175404946 175404988 -26923359 + AT_rich Low_complexity Low_complexity 1 42 0 29 28 0 0 chr4 175405813 175405849 -26922498 + AT_rich Low_complexity Low_complexity 1 36 0 405 333 83 9 chr4 175405998 175406226 -26922121 + HERV16 LTR ERVL 2027 2271 -2725 25 51 0 0 chr4 175406250 175406289 -26922058 + AT_rich Low_complexity Low_complexity 1 39 0 395 343 54 20 chr4 175406530 175406827 -26921520 - ERVL LTR ERVL -630 5134 4828 1061 231 41 29 chr4 175406845 175407161 -26921186 - L1MCc LINE L1 -6086 337 18 1018 330 94 21 chr4 175407171 175408161 -26920186 - ERVL LTR ERVL -2725 2271 1143 1004 130 10 68 chr4 175408222 175408414 -26919933 - MLT2A2 LTR ERVL 0 453 273 873 309 84 38 chr4 175408573 175408820 -26919527 - ERVL LTR ERVL -4070 926 692 2124 148 0 3 chr4 175408820 175409125 -26919222 - AluSx SINE Alu -8 304 1 873 309 84 38 chr4 175409125 175409293 -26919054 - ERVL LTR ERVL -4304 692 533 2784 13 0 0 chr4 175409293 175409599 -26918748 - AluYa5 SINE Alu -5 306 1 873 309 84 38 chr4 175409599 175410017 -26918330 - ERVL LTR ERVL -4463 533 1 1165 306 54 5 chr4 175410017 175410426 -26917921 - LTR16A LTR ERVL 0 450 22 376 361 17 0 chr4 175410566 175410804 -26917543 + L1ME LINE L1 3495 3736 -2410 306 321 24 61 chr4 175410816 175410917 -26917430 + L1ME LINE L1 3978 4072 -2074 2164 126 10 0 chr4 175410917 175411218 -26917129 + AluSx SINE Alu 3 306 -6 306 321 24 61 chr4 175411218 175411281 -26917066 + L1ME LINE L1 4072 4136 -2010 288 282 154 35 chr4 175411621 175411965 -26916382 + L1ME LINE L1 4547 4959 -1187 1370 136 41 0 chr4 175411965 175412186 -26916161 - MER30 DNA MER1_type 0 230 1 288 282 154 35 chr4 175412186 175412295 -26916052 + L1ME LINE L1 4959 5054 -1092 1903 140 29 62 chr4 175412296 175412681 -26915666 + THE1C LTR MaLR 2 373 -2 664 234 85 88 chr4 175413062 175413525 -26914822 - L1MC5 LINE L1 -821 6987 6562 302 258 90 16 chr4 175414281 175414493 -26913854 + L1ME LINE L1 5573 5809 -355 25 0 0 0 chr4 175414587 175414612 -26913735 + AT_rich Low_complexity Low_complexity 1 25 0 862 193 6 12 chr4 175414788 175414949 -26913398 + AluJo SINE Alu 123 282 -30 202 292 125 14 chr4 175415947 175416019 -26912328 + L2 LINE L2 3215 3294 -19 372 256 214 8 chr4 175422179 175422296 -26906051 + MER5A DNA MER1_type 49 189 0 1481 167 6 79 chr4 175423490 175423807 -26904540 + AluJb SINE Alu 3 296 -16 185 0 40 0 chr4 175424920 175424945 -26903402 + (TG)n Simple_repeat Simple_repeat 1 26 0 232 327 28 19 chr4 175424973 175425080 -26903267 - L1MC4 LINE L1 -156 7886 7779 32 43 0 0 chr4 175425487 175425533 -26902814 + AT_rich Low_complexity Low_complexity 1 46 0 33 25 0 0 chr4 175427472 175427512 -26900835 + AT_rich Low_complexity Low_complexity 1 40 0 2021 103 37 0 chr4 175427858 175428164 -26900183 + AluSx SINE Alu 1 316 0 215 218 16 16 chr4 175428341 175428465 -26899882 + (TA)n Simple_repeat Simple_repeat 2 125 0 300 237 79 13 chr4 175432890 175432966 -26895381 - LTR67 LTR ERVL 0 557 477 1577 101 22 0 chr4 175432966 175433194 -26895153 - THE1C-int LTR MaLR -1345 235 3 1829 158 49 25 chr4 175433196 175433562 -26894785 - THE1C LTR MaLR 0 375 1 974 138 0 50 chr4 175433562 175433721 -26894626 - AluJb SINE Alu -161 151 1 22 80 0 0 chr4 175435219 175435269 -26893078 + AT_rich Low_complexity Low_complexity 1 50 0 1888 147 17 0 chr4 175435464 175435763 -26892584 + AluSq SINE Alu 1 304 -9 1505 186 62 34 chr4 175435970 175436325 -26892022 - MLT1A1 LTR MaLR 0 365 1 1795 187 0 7 chr4 175436382 175436692 -26891655 - AluJo SINE Alu -4 308 1 23 0 0 0 chr4 175437712 175437735 -26890612 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr4 175437848 175437880 -26890467 + AT_rich Low_complexity Low_complexity 1 32 0 376 282 0 0 chr4 175439429 175439532 -26888815 - L2 LINE L2 -1232 2082 1980 27 81 0 0 chr4 175442213 175442275 -26886072 + AT_rich Low_complexity Low_complexity 1 62 0 2400 175 33 8 chr4 175443513 175443998 -26884349 - L1MB2 LINE L1 0 6171 5675 5354 213 35 28 chr4 175444003 175445630 -26882717 - L1MB2 LINE L1 -675 5493 3856 249 250 15 29 chr4 175446641 175446709 -26881638 + L2 LINE L2 2714 2780 -534 767 336 47 14 chr4 175446713 175447073 -26881274 + L2 LINE L2 2891 3262 -51 37 39 0 0 chr4 175447189 175447240 -26881107 + AT_rich Low_complexity Low_complexity 1 51 0 361 197 13 0 chr4 175448920 175448996 -26879351 - MER103 DNA DNA -87 79 3 21 0 0 0 chr4 175449217 175449238 -26879109 + AT_rich Low_complexity Low_complexity 1 21 0 310 293 20 0 chr4 175450480 175450579 -26877768 - L1MC4 LINE L1 -1330 6712 6612 2954 148 6 8 chr4 175450635 175451140 -26877207 - L1PA16 LINE L1 -5 6161 5658 5179 136 45 5 chr4 175451799 175453066 -26875281 + L1PA16 LINE L1 4870 6163 -3 2383 92 0 0 chr4 175455049 175455355 -26872992 - AluSc SINE Alu -3 306 1 1927 105 10 48 chr4 175455788 175456101 -26872246 - AluSx SINE Alu -11 301 1 255 311 61 54 chr4 175456583 175456731 -26871616 - MIR SINE MIR -62 200 52 1581 100 0 5 chr4 175456741 175456951 -26871396 + AluSx SINE Alu 1 209 -103 636 271 23 46 chr4 175457571 175457918 -26870429 + L1ME LINE L1 2764 3102 -3044 180 0 0 0 chr4 175458016 175458036 -26870311 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1862 125 10 20 chr4 175458043 175458339 -26870008 + AluSx SINE Alu 1 293 -19 2120 130 0 0 chr4 175458342 175458650 -26869697 + AluSq SINE Alu 1 308 -5 1998 148 6 3 chr4 175458894 175459225 -26869122 + L1PA16 LINE L1 5711 6042 -124 375 269 62 41 chr4 175459985 175460353 -26867994 - L1MB2 LINE L1 -3008 3138 2763 428 341 62 19 chr4 175460445 175460768 -26867579 - L1MB2 LINE L1 -3525 2621 2285 4848 178 41 16 chr4 175461443 175462670 -26865677 - L1MB2 LINE L1 -8 6163 4901 22 0 0 0 chr4 175463264 175463286 -26865061 + AT_rich Low_complexity Low_complexity 1 22 0 1981 158 3 0 chr4 175463301 175463605 -26864742 - AluSx SINE Alu -7 305 1 436 252 138 19 chr4 175463804 175463963 -26864384 - MIR SINE MIR -3 259 82 23 54 0 0 chr4 175464085 175464122 -26864225 + AT_rich Low_complexity Low_complexity 1 37 0 311 354 93 37 chr4 175464145 175464606 -26863741 + L1ME LINE L1 4492 4978 -1168 253 309 126 26 chr4 175464909 175465139 -26863208 + L1ME LINE L1 5374 5626 -495 477 161 9 36 chr4 175465496 175465608 -26862739 + L1MB3 LINE L1 6074 6182 -1 1147 219 48 80 chr4 175466690 175467065 -26861282 - MLT1A1 LTR MaLR -1 364 2 243 162 0 0 chr4 175467497 175467534 -26860813 - MIR SINE MIR -141 67 31 707 275 76 14 chr4 175467630 175467841 -26860506 - MER58A DNA MER1_type 0 224 1 369 0 0 0 chr4 175468727 175468768 -26859579 + (TG)n Simple_repeat Simple_repeat 2 42 0 2172 103 3 7 chr4 175469464 175469764 -26858583 + AluSq SINE Alu 1 299 -14 261 134 30 30 chr4 175470131 175470198 -26858149 + CT-rich Low_complexity Low_complexity 2 68 0 426 344 156 0 chr4 175472566 175472720 -26855627 + MER5A DNA MER1_type 12 189 0 2348 104 0 0 chr4 175473250 175473559 -26854788 - AluSc SINE Alu 0 309 1 362 250 0 0 chr4 175476975 175477047 -26851300 + L2 LINE L2 3242 3313 0 705 325 136 26 chr4 175477194 175478029 -26850318 + L2 LINE L2 2301 3229 -84 588 259 52 0 chr4 175478465 175478600 -26849747 - MER82 DNA MER2_type -22 631 490 * 925 218 151 30 chr4 175478596 175478867 -26849480 - MER82 DNA MER2_type -348 305 2 1761 114 0 8 chr4 175479083 175479328 -26849019 - AluSg1 SINE Alu -64 245 3 426 283 19 0 chr4 175479923 175480029 -26848318 - 5S rRNA rRNA -11 110 3 457 226 44 93 chr4 175480044 175480248 -26848099 + L2 LINE L2 3098 3291 -22 22 56 0 0 chr4 175480687 175480723 -26847624 + AT_rich Low_complexity Low_complexity 1 36 0 2069 29 0 0 chr4 175481154 175481399 -26846948 - L1PA2 LINE L1 -4 6151 5907 27 62 0 0 chr4 175483107 175483155 -26845192 + AT_rich Low_complexity Low_complexity 1 48 0 848 122 8 15 chr4 175483732 175483863 -26844484 - THE1B LTR MaLR -234 130 1 2302 132 3 8 chr4 175484036 175484431 -26843916 - THE1B LTR MaLR -2 373 1 189 121 0 0 chr4 175484512 175484545 -26843802 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 267 203 0 0 chr4 175484718 175484782 -26843565 + (TCCA)n Simple_repeat Simple_repeat 3 66 0 233 292 83 0 chr4 175484857 175484929 -26843418 + L2 LINE L2 3194 3271 -1 200 339 89 24 chr4 175485187 175485311 -26843036 + L2 LINE L2 3116 3247 -66 247 292 14 0 chr4 175485659 175485731 -26842616 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 21 0 0 0 chr4 175486227 175486248 -26842099 + AT_rich Low_complexity Low_complexity 1 21 0 2318 103 6 3 chr4 175487721 175488032 -26840315 - AluSx SINE Alu 0 312 1 10693 49 0 0 chr4 175488179 175489519 -26838828 - L1PA5 LINE L1 -967 5179 3840 6278 147 0 12 chr4 175489519 175490502 -26837845 + L1PA5 LINE L1 5183 6154 0 24 77 0 0 chr4 175490641 175490693 -26837654 + AT_rich Low_complexity Low_complexity 1 52 0 32 57 0 0 chr4 175492523 175492576 -26835771 + AT_rich Low_complexity Low_complexity 1 53 0 23 33 0 0 chr4 175492630 175492660 -26835687 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 175493365 175493386 -26834961 + AT_rich Low_complexity Low_complexity 1 21 0 660 183 0 8 chr4 175493429 175493560 -26834787 + L1PA16 LINE L1 6033 6162 -4 26 0 0 0 chr4 175493592 175493618 -26834729 + AT_rich Low_complexity Low_complexity 1 26 0 270 219 235 67 chr4 175494167 175494286 -26834061 - MIR SINE MIR -108 154 16 277 315 9 0 chr4 175494931 175495042 -26833305 + L1ME LINE L1 5550 5661 -460 31 0 0 0 chr4 175495384 175495415 -26832932 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 175496824 175496846 -26831501 + AT_rich Low_complexity Low_complexity 1 22 0 192 197 333 0 chr4 175497053 175497119 -26831228 - MIR SINE MIR -103 105 18 324 248 0 0 chr4 175498803 175498904 -26829443 + CT-rich Low_complexity Low_complexity 1 101 0 25 0 0 0 chr4 175500925 175500950 -26827397 + AT_rich Low_complexity Low_complexity 1 25 0 1883 168 0 0 chr4 175502478 175502782 -26825565 - AluJb SINE Alu -8 304 1 2554 270 84 49 chr4 175505905 175506255 -26822092 - L1MCc LINE L1 -4894 1529 1193 1320 197 79 55 chr4 175506255 175506636 -26821711 - MLT1B LTR MaLR 0 390 1 2554 270 84 49 chr4 175506636 175508082 -26820265 - L1MCc LINE L1 -5230 1193 17 406 205 60 0 chr4 175508392 175508475 -26819872 - MER5A DNA MER1_type -6 183 96 2126 123 3 0 chr4 175508911 175509220 -26819127 - AluSx SINE Alu -2 310 1 5689 201 59 17 chr4 175509509 175512030 -26816317 - L1MA8 LINE L1 -11 6280 3647 24 0 0 0 chr4 175512428 175512452 -26815895 + AT_rich Low_complexity Low_complexity 1 24 0 1193 279 148 16 chr4 175512549 175512989 -26815358 - MLT1H1 LTR MaLR 0 555 58 455 233 0 0 chr4 175512985 175513098 -26815249 + MLT1D LTR MaLR 399 485 -20 * 24 0 0 0 chr4 175516627 175516651 -26811696 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr4 175517333 175517370 -26810977 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 175517997 175518019 -26810328 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 175518673 175518696 -26809651 + AT_rich Low_complexity Low_complexity 1 23 0 283 345 142 0 chr4 175519064 175519212 -26809135 + MIR3 SINE MIR 39 207 -1 3496 198 21 75 chr4 175519306 175520330 -26808017 - LTR5 LTR ERVK 0 969 1 317 291 143 22 chr4 175520390 175520572 -26807775 - MIR SINE MIR -56 206 3 304 389 56 6 chr4 175520755 175520917 -26807430 - MIR3 SINE MIR -9 199 30 306 0 0 0 chr4 175522454 175522488 -26805859 + (TG)n Simple_repeat Simple_repeat 2 35 0 461 288 152 10 chr4 175523243 175523441 -26804906 - MIR SINE MIR 0 262 37 310 289 0 12 chr4 175524065 175524148 -26804199 - MER81 DNA DNA -20 94 13 2117 128 0 3 chr4 175524295 175524599 -26803748 + AluSx SINE Alu 1 303 -9 490 300 125 20 chr4 175525148 175525348 -26802999 - MIR SINE MIR -15 247 27 21 0 0 0 chr4 175526379 175526400 -26801947 + AT_rich Low_complexity Low_complexity 1 21 0 202 336 26 52 chr4 175526567 175526683 -26801664 + MIR3 SINE MIR 47 159 -49 384 353 15 0 chr4 175526748 175526884 -26801463 + MIR SINE MIR 52 189 -73 230 269 39 0 chr4 175527994 175528072 -26800275 + (TTG)n Simple_repeat Simple_repeat 2 82 0 257 266 71 35 chr4 175529246 175529359 -26798988 - MIR SINE MIR -62 200 84 24 0 0 0 chr4 175529655 175529679 -26798668 + AT_rich Low_complexity Low_complexity 1 24 0 31 0 0 0 chr4 175529990 175530021 -26798326 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 175530113 175530136 -26798211 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr4 175530477 175530513 -26797834 + AT_rich Low_complexity Low_complexity 1 36 0 234 288 128 48 chr4 175532302 175532427 -26795920 - L2 LINE L2 0 3313 3179 297 0 0 0 chr4 175532968 175533001 -26795346 + (CA)n Simple_repeat Simple_repeat 1 33 0 592 279 125 58 chr4 175533021 175533619 -26794728 + L1MEd LINE L1 620 1257 -4862 371 337 98 0 chr4 175533670 175533916 -26794431 + L1MEd LINE L1 1290 1559 -4751 23 101 0 0 chr4 175533960 175534039 -26794308 + AT_rich Low_complexity Low_complexity 1 79 0 361 221 107 46 chr4 175534347 175534478 -26793869 - MIR SINE MIR 0 262 124 284 244 56 0 chr4 175534866 175534956 -26793391 + L1MC/D LINE L1 5221 5315 -831 326 333 0 0 chr4 175534961 175535039 -26793308 + Cheshire DNA MER1_type 2 79 -2341 256 111 111 0 chr4 175535048 175535093 -26793254 + Cheshire DNA MER1_type 845 894 -1526 430 307 40 67 chr4 175535134 175535434 -26792913 + L1MC/D LINE L1 5293 5584 -2458 711 266 78 7 chr4 175535505 175535776 -26792571 - LTR41 LTR ERVL -483 290 1 265 167 74 0 chr4 175536091 175536145 -26792202 - MIR SINE MIR -83 179 122 27 0 0 0 chr4 175536213 175536240 -26792107 + AT_rich Low_complexity Low_complexity 1 27 0 248 109 0 22 chr4 175537507 175537553 -26790794 + (AATTG)n Simple_repeat Simple_repeat 4 48 0 4413 205 53 22 chr4 175538543 175539889 -26788458 - L1MA7 LINE L1 -779 5367 3957 4152 190 29 20 chr4 175539888 175540774 -26787573 + L1MA7 LINE L1 5398 6291 0 * 474 279 126 0 chr4 175540833 175541023 -26787324 + MER57A LTR ERV1 165 378 -25 1332 247 106 42 chr4 175541662 175542155 -26786192 - MLT1F1 LTR MaLR 0 567 58 206 169 34 45 chr4 175542927 175543016 -26785331 + (TTTG)n Simple_repeat Simple_repeat 4 91 0 23 33 0 0 chr4 175543125 175543155 -26785192 + AT_rich Low_complexity Low_complexity 1 30 0 2106 124 0 0 chr4 175543904 175544195 -26784152 + AluSx SINE Alu 3 293 -19 214 279 29 0 chr4 175544200 175544304 -26784043 + (TA)n Simple_repeat Simple_repeat 1 107 0 428 287 158 30 chr4 175544749 175544951 -26783396 - LTR16A1 LTR ERVL -14 443 216 2108 122 0 0 chr4 175545310 175545604 -26782743 + AluSx SINE Alu 3 296 -16 231 146 0 0 chr4 175545792 175545833 -26782514 + (TTTTA)n Simple_repeat Simple_repeat 4 44 0 559 241 90 6 chr4 175545835 175546001 -26782346 - L1MC4 LINE L1 -76 7966 7787 22 0 0 0 chr4 175546316 175546338 -26782009 + AT_rich Low_complexity Low_complexity 1 22 0 34 42 0 0 chr4 175546445 175546493 -26781854 + AT_rich Low_complexity Low_complexity 1 48 0 513 257 15 15 chr4 175546549 175546685 -26781662 - MIR SINE MIR -13 249 114 22 80 0 0 chr4 175547101 175547151 -26781196 + AT_rich Low_complexity Low_complexity 1 50 0 640 344 123 19 chr4 175547328 175547799 -26780548 + L2 LINE L2 2122 2641 -673 340 287 274 0 chr4 175547777 175547941 -26780406 - MIR SINE MIR -24 238 30 * 505 291 132 52 chr4 175550106 175550666 -26777681 + HAL1b LINE L1 65 669 -679 231 279 0 0 chr4 175550692 175550753 -26777594 + HAL1b LINE L1 623 683 -665 254 301 48 12 chr4 175551103 175551186 -26777161 + L2 LINE L2 3192 3277 -36 221 296 71 51 chr4 175551551 175551649 -26776698 - MIR3 SINE MIR -28 180 81 2801 54 0 0 chr4 175552988 175553339 -26775008 - L1PA5 LINE L1 -4 6150 5800 2221 114 0 0 chr4 175553343 175553640 -26774707 - AluSx SINE Alu -15 297 1 207 108 0 27 chr4 175554291 175554328 -26774019 + (TA)n Simple_repeat Simple_repeat 1 36 0 5643 173 94 21 chr4 175555169 175561047 -26767300 - L1PA10 LINE L1 -1 6482 20 2150 97 27 3 chr4 175561057 175561357 -26766990 - AluSc SINE Alu -2 307 1 229 96 19 39 chr4 175561912 175561964 -26766383 + (CAAAA)n Simple_repeat Simple_repeat 1 51 0 180 0 0 0 chr4 175566130 175566150 -26762197 + (TG)n Simple_repeat Simple_repeat 1 20 0 1027 166 21 0 chr4 175566333 175566520 -26761827 + L1MA9 LINE L1 5863 6053 -259 419 225 58 4 chr4 175566575 175566691 -26761656 + L1MA9 LINE L1 6167 6288 -7 1194 264 19 17 chr4 175567782 175568142 -26760205 - MLT1A1 LTR MaLR 0 365 5 1274 146 5 5 chr4 175568626 175568831 -26759516 + MER2 DNA MER2_type 2 206 -139 25 65 0 0 chr4 175568831 175568877 -26759470 + AT_rich Low_complexity Low_complexity 1 46 0 191 36 36 0 chr4 175568882 175568910 -26759437 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 267 310 14 0 chr4 175568930 175569001 -26759346 + MER2 DNA MER2_type 273 344 -1 2084 174 5 8 chr4 175569016 175569383 -26758964 + MER47A DNA MER2_type 1 366 0 237 340 32 21 chr4 175570080 175570174 -26758173 + MIR3 SINE MIR 89 183 -25 1612 166 25 56 chr4 175570226 175570546 -26757801 - AluJb SINE Alu -2 310 1 231 283 71 10 chr4 175573362 175573461 -26754886 + MLT1J2 LTR MaLR 20 124 -326 2374 137 13 8 chr4 175573761 175574134 -26754213 + THE1C LTR MaLR 1 375 0 5949 101 8 47 chr4 175574134 175575057 -26753290 + THE1C-int LTR MaLR 1 887 -693 763 95 9 0 chr4 175575057 175575162 -26753185 + THE1C LTR MaLR 270 375 0 659 111 0 8 chr4 175576204 175576321 -26752026 + (GAA)n Simple_repeat Simple_repeat 1 116 0 1099 206 109 35 chr4 175576423 175576763 -26751584 - MLT1A1 LTR MaLR 0 365 1 2297 73 0 14 chr4 175576945 175577259 -26751088 + AluYa5 SINE Alu 1 310 0 274 262 47 19 chr4 175577736 175577843 -26750504 + MER103 DNA DNA 54 163 -3 472 274 86 34 chr4 175579757 175579991 -26748356 - L2 LINE L2 -1230 2084 1839 873 300 30 49 chr4 175579994 175580364 -26747983 - L2 LINE L2 -1732 1582 1220 271 308 48 19 chr4 175580370 175580474 -26747873 - L2 LINE L2 -2349 965 859 392 345 85 22 chr4 175580546 175580769 -26747578 - L2 LINE L2 -2619 695 459 533 269 167 11 chr4 175580814 175581000 -26747347 + MIR SINE MIR 46 260 -2 463 333 70 22 chr4 175581000 175581228 -26747119 - L2 LINE L2 -2856 458 220 2235 109 0 0 chr4 175582002 175582295 -26746052 + AluSg SINE Alu 1 293 -17 23 33 0 0 chr4 175584125 175584155 -26744192 + AT_rich Low_complexity Low_complexity 1 30 0 334 305 68 62 chr4 175584217 175584601 -26743746 + HAL1 LINE L1 943 1328 -1179 505 294 18 50 chr4 175584635 175584917 -26743430 + HAL1b LINE L1 302 574 -774 559 294 61 33 chr4 175585432 175585677 -26742670 + L1MC5 LINE L1 6625 6876 -1085 323 89 0 36 chr4 175585716 175585772 -26742575 + MADE1 DNA Mariner 27 80 0 243 196 0 18 chr4 175585774 175585830 -26742517 + MER45 DNA AcHobo 1493 1547 -34 1163 218 136 15 chr4 175585846 175586176 -26742171 - L1ME1 LINE L1 -99 6067 5698 320 292 80 7 chr4 175586678 175586815 -26741532 - MIR SINE MIR -2 260 114 570 349 39 12 chr4 175587150 175587405 -26740942 + MIR SINE MIR 1 262 0 258 81 0 0 chr4 175588602 175588639 -26739708 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 303 28 0 0 chr4 175588638 175588674 -26739673 + (GA)n Simple_repeat Simple_repeat 1 36 0 708 128 64 24 chr4 175588730 175588855 -26739492 + FLAM_C SINE Alu 1 130 -3 1617 81 9 0 chr4 175590265 175590487 -26737860 - L1PA8 LINE L1 -5 6167 5944 1992 62 4 0 chr4 175590487 175590747 -26737600 + L1PA8 LINE L1 5693 5953 -219 247 273 136 78 chr4 175592052 175592088 -26736259 - L2 LINE L2 -252 3061 3029 2111 128 3 0 chr4 175592088 175592393 -26735954 - AluSq SINE Alu -7 306 1 247 273 136 78 chr4 175592393 175592510 -26735837 - L2 LINE L2 -284 3029 2899 186 103 0 0 chr4 175592598 175592627 -26735720 + (ATG)n Simple_repeat Simple_repeat 3 31 0 575 283 78 30 chr4 175592632 175592862 -26735485 - MIR SINE MIR -10 252 12 273 336 8 47 chr4 175592947 175593109 -26735238 + MIR3 SINE MIR 6 159 -49 2177 103 3 16 chr4 175594137 175594447 -26733900 - AluSq SINE Alu -5 308 3 467 280 48 8 chr4 175595256 175595393 -26732954 + MIR SINE MIR 23 167 -41 21 0 0 0 chr4 175596157 175596178 -26732169 + AT_rich Low_complexity Low_complexity 1 21 0 1894 255 95 43 chr4 175596350 175597248 -26731099 - L1ME LINE L1 -5081 989 46 227 273 91 11 chr4 175597311 175597399 -26730948 - L1MEd LINE L1 -5454 665 571 317 233 0 56 chr4 175600234 175600324 -26728023 - HsTC2 DNA Tc2 -16 1882 1798 635 297 93 7 chr4 175600387 175600687 -26727660 - HsTC2 DNA Tc2 -299 1599 1274 286 293 28 9 chr4 175600715 175600821 -26727526 - HsTC2 DNA Tc2 -1770 128 21 4103 239 31 25 chr4 175601861 175602249 -26726098 - MER45B DNA AcHobo -542 1039 655 1388 193 6 44 chr4 175602249 175602570 -26725777 - AluJo SINE Alu -3 309 1 4103 239 31 25 chr4 175602570 175603200 -26725147 - MER45B DNA AcHobo -926 655 15 309 313 7 5 chr4 175603232 175603361 -26724986 + MLT1G LTR MaLR 254 451 -139 743 313 29 16 chr4 175603660 175603906 -26724441 + MIR SINE MIR 13 261 -1 867 150 0 0 chr4 175604702 175604829 -26723518 + AluSx SINE Alu 7 133 -180 267 152 0 0 chr4 175604829 175604875 -26723472 + A-rich Low_complexity Low_complexity 1 46 0 959 160 0 72 chr4 175604878 175605072 -26723275 + AluSx SINE Alu 130 309 0 21 36 0 0 chr4 175606169 175606197 -26722150 + AT_rich Low_complexity Low_complexity 1 28 0 225 154 0 0 chr4 175606559 175606598 -26721749 + (TA)n Simple_repeat Simple_repeat 1 39 0 23 0 0 0 chr4 175607687 175607710 -26720637 + AT_rich Low_complexity Low_complexity 1 23 0 255 31 0 0 chr4 175607770 175607802 -26720545 + (TA)n Simple_repeat Simple_repeat 2 33 0 22 0 0 0 chr4 175608226 175608248 -26720099 + AT_rich Low_complexity Low_complexity 1 22 0 2029 173 3 32 chr4 175608928 175609063 -26719284 + MLT1A1 LTR MaLR 5 142 -223 2369 114 27 8 chr4 175609063 175609431 -26718916 + THE1C LTR MaLR 1 375 0 2029 173 3 32 chr4 175609431 175609666 -26718681 + MLT1A1 LTR MaLR 142 364 -1 267 364 62 8 chr4 175610084 175610213 -26718134 - L2 LINE L2 -36 3236 3101 394 386 70 19 chr4 175610520 175610992 -26717355 - L2 LINE L2 -564 2750 2255 477 271 174 13 chr4 175611005 175611160 -26717187 + MER5A DNA MER1_type 10 189 0 357 24 0 0 chr4 175611678 175611720 -26716627 + (T)n Simple_repeat Simple_repeat 1 42 0 2165 109 3 10 chr4 175611906 175612219 -26716128 + AluSq SINE Alu 1 311 -2 31534 36 2 1 chr4 175612871 175618402 -26709945 - L1PA3 LINE L1 -5 6150 617 700 69 0 0 chr4 175618396 175618483 -26709864 - L1PA3 LINE L1 -6048 98 12 * 263 100 0 0 chr4 175618497 175618537 -26709810 + FRAM/FAM SINE Alu 22 61 -114 2543 157 18 45 chr4 175618847 175619402 -26708945 + L1MA6 LINE L1 5759 6298 -2 219 386 35 12 chr4 175619486 175619657 -26708690 - MIR SINE MIR -63 199 25 33 25 0 0 chr4 175620874 175620914 -26707433 + AT_rich Low_complexity Low_complexity 1 40 0 391 337 72 0 chr4 175621410 175621603 -26706744 + HAL1 LINE L1 125 331 -2176 256 374 38 48 chr4 175621611 175622004 -26706343 + HAL1 LINE L1 376 764 -1743 24 0 0 0 chr4 175622754 175622778 -26705569 + AT_rich Low_complexity Low_complexity 1 24 0 353 82 72 0 chr4 175623337 175623434 -26704913 + (TA)n Simple_repeat Simple_repeat 1 104 0 334 352 16 44 chr4 175624059 175624241 -26704106 + HAL1 LINE L1 599 775 -1732 708 262 81 6 chr4 175624250 175624571 -26703776 - Charlie2 DNA MER1_type -667 2195 1851 311 319 91 20 chr4 175624566 175624864 -26703483 - Charlie2 DNA MER1_type -2455 327 9 * 345 289 63 26 chr4 175626834 175627081 -26701266 - L1ME3A LINE L1 -7 6155 5871 481 259 143 35 chr4 175627104 175627390 -26700957 + L1ME3A LINE L1 5521 5837 -333 522 273 137 22 chr4 175627660 175627931 -26700416 + L1ME3A LINE L1 5536 5837 -333 321 368 13 7 chr4 175627996 175628151 -26700196 + ERVL LTR ERVL 4267 4422 -1342 189 159 0 0 chr4 175628715 175628759 -26699588 + T-rich Low_complexity Low_complexity 5 48 0 334 240 25 103 chr4 175628974 175629178 -26699169 - L1MC4 LINE L1 -407 7635 7448 22 35 0 0 chr4 175630098 175630127 -26698220 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr4 175630211 175630243 -26698104 + AT_rich Low_complexity Low_complexity 1 32 0 34 72 0 0 chr4 175630265 175630334 -26698013 + AT_rich Low_complexity Low_complexity 1 69 0 259 269 0 42 chr4 175630452 175630571 -26697776 + L1MC4 LINE L1 6590 6703 -1339 340 267 47 0 chr4 175630571 175630657 -26697690 + L1MC4 LINE L1 6614 6703 -1339 209 250 33 0 chr4 175630665 175630725 -26697622 + (TATATG)n Simple_repeat Simple_repeat 1 62 0 1790 196 94 15 chr4 175630725 175631180 -26697167 + L1MA9 LINE L1 5784 6274 -38 980 239 14 18 chr4 175632134 175632356 -26695991 - MER8 DNA MER2_type -17 222 2 2322 110 0 0 chr4 175632633 175632941 -26695406 + AluSx SINE Alu 1 308 -4 957 175 12 6 chr4 175632996 175633167 -26695180 - FAM SINE Alu -3 172 1 13249 144 63 27 chr4 175633232 175635565 -26692782 - Tigger1 DNA MER2_type 0 2418 2 202 74 0 0 chr4 175636379 175636406 -26691941 + L2 LINE L2 3263 3289 -24 182 208 0 125 chr4 175636475 175636571 -26691776 - MER5C DNA MER1_type -18 306 223 238 301 57 45 chr4 175636608 175636784 -26691563 - L1MEc LINE L1 -5923 473 296 985 107 20 0 chr4 175636869 175637019 -26691328 - L1PA15 LINE L1 -1 6164 6012 2168 213 23 16 chr4 175637022 175637642 -26690705 - LTR27 LTR ERV1 -130 506 1 237 292 26 35 chr4 175637773 175637886 -26690461 - L1ME LINE L1 -4809 1452 1341 357 306 61 40 chr4 175637898 175638200 -26690147 - L1ME LINE L1 -5177 893 750 1720 156 7 7 chr4 175638200 175638476 -26689871 - AluJo SINE Alu -26 286 11 357 306 61 40 chr4 175638476 175638677 -26689670 - L1ME LINE L1 -5320 750 555 23 78 0 0 chr4 175639675 175639726 -26688621 + AT_rich Low_complexity Low_complexity 1 51 0 459 0 0 0 chr4 175639778 175639829 -26688518 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 677 260 69 28 chr4 175640992 175641384 -26686963 - L1M4 LINE L1 -1694 4452 4045 35 0 0 0 chr4 175642479 175642514 -26685833 + AT_rich Low_complexity Low_complexity 1 35 0 243 267 0 13 chr4 175643549 175643624 -26684723 - L1M4 LINE L1 -1803 4343 4270 21 0 0 0 chr4 175643765 175643786 -26684561 + AT_rich Low_complexity Low_complexity 1 21 0 507 314 50 0 chr4 175644190 175644349 -26683998 + MIR SINE MIR 2 168 -94 244 227 53 27 chr4 175644509 175644584 -26683763 - L2 LINE L2 -16 3297 3221 429 143 0 0 chr4 175644976 175645053 -26683294 - AluSc SINE Alu -1 308 232 28966 43 35 3 chr4 175645377 175649044 -26679303 + L1P LINE L1 2 3787 -2359 719 175 0 8 chr4 175649302 175649428 -26678919 + AluJb SINE Alu 3 127 -185 264 389 31 12 chr4 175649685 175649847 -26678500 - MER5B DNA MER1_type -12 166 2 21 0 0 0 chr4 175652006 175652027 -26676320 + AT_rich Low_complexity Low_complexity 1 21 0 2266 104 51 25 chr4 175656332 175656687 -26671660 - THE1B LTR MaLR 0 364 1 11571 99 9 2 chr4 175656687 175658256 -26670091 - THE1B-int LTR MaLR 0 1580 1 2156 118 51 25 chr4 175658256 175658611 -26669736 - THE1B LTR MaLR 0 364 1 23 68 0 0 chr4 175658640 175658684 -26669663 + AT_rich Low_complexity Low_complexity 1 44 0 454 280 160 37 chr4 175658924 175659338 -26669009 - MLT1H1 LTR MaLR 0 549 27 290 252 30 30 chr4 175659577 175659712 -26668635 - L1ME LINE L1 -3221 2859 2725 1181 229 7 25 chr4 175659761 175660041 -26668306 - AluJo SINE Alu 0 312 38 818 256 106 14 chr4 175660048 175660396 -26667951 - L1ME LINE L1 -3394 2686 2307 293 76 61 0 chr4 175660399 175660465 -26667882 + (TA)n Simple_repeat Simple_repeat 2 71 0 256 239 0 0 chr4 175660549 175660616 -26667731 + L1M4 LINE L1 2293 2359 -3787 743 168 60 0 chr4 175660634 175660783 -26667564 + MER2 DNA MER2_type 146 303 -42 351 321 112 48 chr4 175661076 175661406 -26666941 - L1ME LINE L1 -5687 383 33 26 50 0 0 chr4 175662165 175662205 -26666142 + AT_rich Low_complexity Low_complexity 1 40 0 2129 82 7 10 chr4 175662209 175662501 -26665846 - AluY SINE Alu -20 291 1 2089 51 7 0 chr4 175662528 175662801 -26665546 + L1P LINE L1 5 279 -5867 * 7647 14 1 2 chr4 175662798 175664250 -26664097 + L1HS LINE L1 4672 6122 -33 527 308 50 0 chr4 175664563 175664722 -26663625 + MIR SINE MIR 2 168 -94 261 213 53 27 chr4 175664882 175664957 -26663390 - L2 LINE L2 -16 3297 3221 194 305 0 0 chr4 175665067 175665126 -26663221 + MIR SINE MIR 204 262 0 2452 71 3 0 chr4 175665348 175665657 -26662690 - AluY SINE Alu -1 310 1 513 113 50 0 chr4 175666067 175666147 -26662200 - Tigger2 DNA MER2_type -226 2492 2409 2103 169 66 7 chr4 175666550 175666959 -26661388 + Tigger2a DNA MER2_type 2 434 0 198 224 0 75 chr4 175667148 175667215 -26661132 - MIR SINE MIR 0 262 201 21 57 0 0 chr4 175667641 175667676 -26660671 + AT_rich Low_complexity Low_complexity 1 35 0 4332 168 11 32 chr4 175667983 175668812 -26659535 - L1MA8 LINE L1 -169 6122 5313 350 345 97 38 chr4 175670229 175670571 -26657776 + L3 LINE CR1 1036 1397 -180 777 301 82 53 chr4 175670576 175670849 -26657498 + L1ME LINE L1 2 266 -5804 1795 251 28 20 chr4 175670849 175671350 -26656997 - MLT1D LTR MaLR 0 505 1 777 301 82 53 chr4 175671350 175671601 -26656746 + L1ME LINE L1 266 541 -5529 278 329 144 18 chr4 175671623 175671790 -26656557 + L3 LINE CR1 1384 1571 -6 362 344 61 0 chr4 175672003 175672183 -26656164 - MIR SINE MIR -6 256 66 215 281 24 12 chr4 175673062 175673144 -26655203 + L2 LINE L2 1218 1300 -2014 22 0 0 0 chr4 175674279 175674301 -26654046 + AT_rich Low_complexity Low_complexity 1 22 0 1052 162 5 40 chr4 175674340 175674538 -26653809 + THE1C LTR MaLR 3 193 -182 229 353 63 48 chr4 175674594 175674846 -26653501 + L2 LINE L2 2804 3059 -213 2130 112 0 0 chr4 175676388 175676702 -26651645 - AluSq SINE Alu 0 314 1 303 336 46 0 chr4 175677442 175677573 -26650774 + L1MEd LINE L1 26 162 -5957 444 350 36 0 chr4 175677714 175677908 -26650439 + L1MEd LINE L1 461 661 -5458 328 346 45 11 chr4 175678135 175678404 -26649943 + L1MEd LINE L1 932 1209 -4910 425 350 102 68 chr4 175678511 175679069 -26649278 + L1M2 LINE L1 10 586 -6263 244 330 50 50 chr4 175679849 175680128 -26648219 + L2 LINE L2 1779 2057 -1257 469 377 117 9 chr4 175680418 175681068 -26647279 + L2 LINE L2 2161 2880 -434 879 279 45 54 chr4 175681450 175681895 -26646452 - MER90 LTR ERV1 -134 441 1 270 388 40 53 chr4 175682315 175682614 -26645733 + L2 LINE L2 2924 3218 -54 481 350 30 46 chr4 175683175 175683438 -26644909 + MIR SINE MIR 1 259 -3 21 36 0 0 chr4 175683966 175683994 -26644353 + AT_rich Low_complexity Low_complexity 1 28 0 1552 153 18 3 chr4 175684011 175684293 -26644054 - L1MA9 LINE L1 -2 6310 6025 242 283 66 86 chr4 175684295 175684493 -26643854 + L1MEd LINE L1 90 283 -5836 367 343 95 34 chr4 175684869 175685257 -26643090 - HAL1b LINE L1 -588 760 349 2648 125 58 14 chr4 175687091 175687673 -26640674 - MER4E LTR ERV1 0 766 1 1318 243 82 21 chr4 175688100 175688574 -26639773 - Charlie1b DNA MER1_type 0 523 21 343 394 15 0 chr4 175688608 175688745 -26639602 + MIR SINE MIR 14 152 -110 22 0 0 0 chr4 175688875 175688897 -26639450 + AT_rich Low_complexity Low_complexity 1 22 0 203 254 0 0 chr4 175689055 175689118 -26639229 + A-rich Low_complexity Low_complexity 1 63 0 22 35 0 0 chr4 175689420 175689449 -26638898 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr4 175689598 175689622 -26638725 + AT_rich Low_complexity Low_complexity 1 24 0 889 0 0 0 chr4 175690741 175690840 -26637507 + AluYa5/8 SINE Alu 204 302 -8 25 0 0 0 chr4 175691398 175691423 -26636924 + AT_rich Low_complexity Low_complexity 1 25 0 1143 169 52 20 chr4 175691766 175692015 -26636332 - MLT2C1 LTR ERVL -140 257 1 4027 163 27 58 chr4 175692442 175693288 -26635059 - MER6 DNA MER2_type 0 865 46 42 0 0 0 chr4 175693847 175693889 -26634458 + AT_rich Low_complexity Low_complexity 1 42 0 445 314 166 33 chr4 175693932 175694355 -26633992 - MLT1H1 LTR MaLR -7 548 70 279 304 0 0 chr4 175695282 175695351 -26632996 + A-rich Low_complexity Low_complexity 4 72 0 218 125 25 0 chr4 175696690 175696730 -26631617 + (TATAA)n Simple_repeat Simple_repeat 5 45 0 22 0 0 0 chr4 175696870 175696892 -26631455 + AT_rich Low_complexity Low_complexity 1 22 0 194 272 61 44 chr4 175697034 175697148 -26631199 + L2 LINE L2 2566 2681 -633 2121 108 0 3 chr4 175697770 175698080 -26630267 - AluSq SINE Alu 0 309 1 207 380 107 0 chr4 175698311 175698432 -26629915 + L2 LINE L2 3138 3271 -1 23 0 0 0 chr4 175698504 175698527 -26629820 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr4 175698954 175698980 -26629367 + AT_rich Low_complexity Low_complexity 1 26 0 3327 213 26 64 chr4 175699078 175699895 -26628452 - L1MB7 LINE L1 -8 6674 5902 3394 166 48 9 chr4 175699895 175700541 -26627806 - LTR51 LTR ERV1 0 671 1 3327 213 26 64 chr4 175700541 175700714 -26627633 - L1MB7 LINE L1 -780 5902 5724 * 3502 238 109 40 chr4 175700705 175702146 -26626201 - L1MB7 LINE L1 -1556 5088 3549 309 272 38 6 chr4 175702160 175702318 -26626029 - L1MB7 LINE L1 -4136 2510 2348 1896 149 0 0 chr4 175702350 175702659 -26625688 + AluSx SINE Alu 1 309 0 516 251 86 33 chr4 175702679 175702922 -26625425 - L1MB7 LINE L1 -4488 2158 1903 5013 254 28 50 chr4 175703032 175704938 -26623409 - L1MB7 LINE L1 -4749 1897 26 27 29 0 0 chr4 175705429 175705463 -26622884 + AT_rich Low_complexity Low_complexity 1 34 0 205 325 94 35 chr4 175705755 175705958 -26622389 + MIR SINE MIR 48 262 0 21 36 0 0 chr4 175707555 175707583 -26620764 + AT_rich Low_complexity Low_complexity 1 28 0 300 283 107 9 chr4 175708429 175708662 -26619685 - L1ME1 LINE L1 -154 6081 5787 1208 254 92 33 chr4 175708686 175709327 -26619020 - L1ME1 LINE L1 -890 5325 4647 * 3399 271 87 50 chr4 175709323 175709652 -26618695 - L1ME1 LINE L1 -1901 4314 3999 1595 195 0 17 chr4 175709652 175709939 -26618408 - AluJo SINE Alu -30 282 1 3399 271 87 50 chr4 175709939 175712109 -26616238 - L1ME1 LINE L1 -2216 3999 1761 372 254 7 60 chr4 175712107 175712278 -26616069 - L1ME1 LINE L1 -5903 302 147 * 13522 32 3 0 chr4 175712297 175714700 -26613647 - L1PA2 LINE L1 0 6155 3751 21 0 0 0 chr4 175715328 175715349 -26612998 + AT_rich Low_complexity Low_complexity 1 21 0 1939 134 13 10 chr4 175716130 175716428 -26611919 + AluSx SINE Alu 1 299 -13 258 361 82 6 chr4 175716850 175717008 -26611339 + L2 LINE L2 2222 2391 -923 2097 113 0 30 chr4 175717862 175718164 -26610183 + AluSq SINE Alu 1 293 -20 351 0 0 0 chr4 175718415 175718454 -26609893 + (TG)n Simple_repeat Simple_repeat 2 40 0 286 240 27 20 chr4 175718459 175718609 -26609738 + (TA)n Simple_repeat Simple_repeat 1 151 0 510 141 40 61 chr4 175718664 175718763 -26609584 - FRAM SINE Alu -6 170 74 2863 231 97 13 chr4 175718763 175719607 -26608740 - L1MC4a LINE L1 -73 7735 6821 1884 128 0 10 chr4 175720736 175721054 -26607293 - AluSq SINE Alu 0 315 1 22 35 0 0 chr4 175721259 175721288 -26607059 + AT_rich Low_complexity Low_complexity 1 29 0 1752 78 0 13 chr4 175721300 175721590 -26606757 - AluY SINE Alu 0 342 56 821 131 0 22 chr4 175721592 175721729 -26606618 - MER11B LTR ERVK 0 1236 1103 2044 126 17 0 chr4 175721987 175722288 -26606059 + AluSp SINE Alu 1 306 -7 538 286 57 10 chr4 175722519 175722711 -26605636 + MIR SINE MIR 3 203 -59 1020 149 0 0 chr4 175722900 175723074 -26605273 + (TA)n Simple_repeat Simple_repeat 2 175 0 256 288 61 0 chr4 175723884 175723950 -26604397 - L3 LINE CR1 -65 1512 1443 303 435 61 13 chr4 175724521 175724994 -26603353 + L3 LINE CR1 1038 1533 -44 709 235 36 6 chr4 175725035 175725201 -26603146 - LTR8 LTR ERV1 0 691 521 2172 117 7 0 chr4 175725219 175725526 -26602821 - AluSp SINE Alu -4 309 1 1446 182 15 109 chr4 175725557 175725953 -26602394 - LTR8 LTR ERV1 -332 359 1 1891 140 0 33 chr4 175726329 175726636 -26601711 + AluSg SINE Alu 1 297 -13 228 339 104 66 chr4 175727450 175728120 -26600227 - L2 LINE L2 -479 2835 2140 2174 95 23 7 chr4 175728939 175729245 -26599102 + AluY SINE Alu 1 311 0 21 0 0 0 chr4 175729695 175729716 -26598631 + AT_rich Low_complexity Low_complexity 1 21 0 197 225 25 0 chr4 175729764 175729804 -26598543 + MER5A DNA MER1_type 71 111 -78 681 292 61 61 chr4 175729838 175730232 -26598115 + L1ME2 LINE L1 2731 3127 -3019 2026 100 50 4 chr4 175730232 175730511 -26597836 + AluSg SINE Alu 1 292 -18 681 292 61 61 chr4 175730511 175730694 -26597653 + L1ME2 LINE L1 3126 3308 -2838 279 371 35 7 chr4 175730704 175730847 -26597500 - MIR SINE MIR -98 164 18 537 58 0 0 chr4 175731110 175731179 -26597168 + (CATA)n Simple_repeat Simple_repeat 3 71 0 187 357 43 0 chr4 175731322 175731392 -26596955 + L2 LINE L2 3150 3222 -50 22 0 0 0 chr4 175732222 175732244 -26596103 + AT_rich Low_complexity Low_complexity 1 22 0 282 225 14 0 chr4 175732945 175733016 -26595331 - L1ME1 LINE L1 -5 6161 6090 1235 229 50 22 chr4 175733069 175733470 -26594877 - L1M4 LINE L1 -1308 4838 4427 241 243 68 0 chr4 175733471 175733545 -26594802 - L1M4 LINE L1 -1807 4339 4261 791 321 30 8 chr4 175733546 175733913 -26594434 - L1MEc LINE L1 -4593 1803 1429 254 330 20 0 chr4 175734243 175734343 -26594004 - L1MEc LINE L1 -6122 274 173 263 224 0 0 chr4 175734499 175734566 -26593781 - L1M4 LINE L1 -2116 4030 3964 * 1193 244 64 82 chr4 175734565 175735236 -26593111 + L1ME2 LINE L1 4519 5177 -969 13987 148 19 112 chr4 175735256 175738698 -26589649 + L1P LINE L1 12 3134 -3012 662 88 3 1 chr4 175738692 175738792 -26589555 - L1P3 LINE L1 -595 5559 5459 * 1113 70 0 0 chr4 175738794 175738937 -26589410 + L1PA8 LINE L1 6027 6169 -3 310 222 12 0 chr4 175738963 175739044 -26589303 + L1ME2 LINE L1 5187 5268 -878 356 171 12 0 chr4 175739046 175739128 -26589219 + (TG)n Simple_repeat Simple_repeat 2 84 0 1582 265 87 28 chr4 175739135 175739848 -26588499 + L1ME2 LINE L1 5290 6044 -120 219 186 57 0 chr4 175739971 175740041 -26588306 + (TA)n Simple_repeat Simple_repeat 2 75 0 305 237 0 10 chr4 175740319 175740416 -26587931 + CT-rich Low_complexity Low_complexity 4 99 0 331 289 22 0 chr4 175741389 175741479 -26586868 - L1MC4 LINE L1 -1339 6703 6612 24 32 0 0 chr4 175742056 175742087 -26586260 + AT_rich Low_complexity Low_complexity 1 31 0 1892 114 7 7 chr4 175742087 175742367 -26585980 + AluSq SINE Alu 1 280 -33 180 0 0 0 chr4 175742368 175742388 -26585959 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2644 223 153 61 chr4 175743576 175744896 -26583451 - L1MCa LINE L1 -3961 2603 1162 640 241 44 73 chr4 175744875 175745190 -26583157 - L1MCa LINE L1 -5309 736 431 * 462 284 49 8 chr4 175745206 175745389 -26582958 - L1MCa LINE L1 -5858 346 1 1457 204 106 26 chr4 175746767 175746816 -26581531 + L1MB7 LINE L1 4915 4959 -1187 3402 66 11 11 chr4 175746816 175747258 -26581089 + MLT2A1 LTR ERVL 3 444 0 1457 204 106 26 chr4 175747258 175747660 -26580687 + L1MB7 LINE L1 4959 5402 -744 992 198 114 22 chr4 175747660 175747887 -26580460 - MLT1D LTR MaLR 0 505 258 384 109 0 0 chr4 175747906 175747961 -26580386 - MADE1 DNA Mariner -4 76 22 327 83 0 0 chr4 175747985 175748033 -26580314 - MADE1 DNA Mariner -32 48 1 806 195 13 98 chr4 175748059 175748295 -26580052 - MLT1D LTR MaLR -289 216 1 3158 215 26 31 chr4 175748296 175749067 -26579280 + L1MB7 LINE L1 5399 6165 -19 441 352 23 32 chr4 175749108 175749327 -26579020 - MIR SINE MIR -32 230 14 325 310 38 84 chr4 175749431 175749670 -26578677 + MIR SINE MIR 2 229 -33 210 91 0 0 chr4 175749670 175749703 -26578644 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 1230 283 80 69 chr4 175749705 175750250 -26578097 - L2 LINE L2 -9 3304 2727 180 0 0 0 chr4 175750250 175750270 -26578077 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1230 283 80 69 chr4 175750270 175750665 -26577682 - L2 LINE L2 -586 2727 2338 266 306 35 0 chr4 175751428 175751513 -26576834 - L2 LINE L2 0 3313 3226 2077 146 6 3 chr4 175753279 175753609 -26574738 - MER1B DNA MER1_type -2 335 5 320 147 13 0 chr4 175754657 175754732 -26573615 + (CA)n Simple_repeat Simple_repeat 2 77 0 183 362 0 0 chr4 175755195 175755242 -26573105 + L2 LINE L2 3206 3252 -20 237 314 33 66 chr4 175755536 175755657 -26572690 + L2 LINE L2 3164 3280 -33 29 47 0 0 chr4 175755657 175755700 -26572647 + AT_rich Low_complexity Low_complexity 1 43 0 247 313 0 0 chr4 175756208 175756298 -26572049 + L1P4 LINE L1 5734 5823 -351 642 102 31 10 chr4 175756419 175756517 -26571830 + HY3 scRNA scRNA 1 100 -1 316 306 23 46 chr4 175756569 175756742 -26571605 - L1M4 LINE L1 -1491 5371 5203 339 325 113 5 chr4 175757904 175758098 -26570249 + MIR SINE MIR 48 262 0 1484 118 20 0 chr4 175758362 175758607 -26569740 - L1MA3 LINE L1 0 6305 6056 376 227 0 21 chr4 175761024 175761121 -26567226 - L1PB4 LINE L1 0 6156 6062 11144 192 41 8 chr4 175761681 175765205 -26563142 - L1PB2 LINE L1 0 6151 2512 189 0 0 0 chr4 175765215 175765236 -26563111 + (T)n Simple_repeat Simple_repeat 1 21 0 6497 161 116 18 chr4 175765339 175765822 -26562525 - L1PBa LINE L1 -3156 3706 3272 2039 130 20 0 chr4 175765822 175766123 -26562224 - AluSq SINE Alu -6 307 1 6497 161 116 18 chr4 175766123 175767148 -26561199 - L1PBa LINE L1 -3590 3272 1943 1621 151 69 3 chr4 175767148 175767439 -26560908 + AluSx SINE Alu 1 310 -2 6497 161 116 18 chr4 175767439 175767847 -26560500 - L1PBa LINE L1 -4919 1943 1577 2871 216 23 36 chr4 175767831 175768525 -26559822 - L1PBa LINE L1 -6178 685 1 * 21 0 0 0 chr4 175769070 175769091 -26559256 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr4 175769401 175769437 -26558910 + AT_rich Low_complexity Low_complexity 1 36 0 229 181 14 69 chr4 175769648 175769720 -26558627 - L1M2 LINE L1 -737 5575 5508 29 28 0 0 chr4 175769894 175769930 -26558417 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr4 175770296 175770324 -26558023 + AT_rich Low_complexity Low_complexity 1 28 0 225 209 0 0 chr4 175770512 175770555 -26557792 + T-rich Low_complexity Low_complexity 1 43 0 184 189 0 0 chr4 175770632 175770669 -26557678 + L2 LINE L2 3277 3313 0 3484 237 71 28 chr4 175771498 175772469 -26555878 + MER45B DNA AcHobo 1 1013 -27 1141 195 33 9 chr4 175772779 175772989 -26555358 + AluJo SINE Alu 79 293 -19 763 230 159 11 chr4 175773253 175773536 -26554811 - L1ME LINE L1 -492 5672 5348 981 195 34 8 chr4 175773588 175773882 -26554465 + MLT2C1 LTR ERVL 10 357 -40 316 216 21 0 chr4 175773907 175774004 -26554343 + (TA)n Simple_repeat Simple_repeat 1 99 0 29 28 0 0 chr4 175774033 175774069 -26554278 + AT_rich Low_complexity Low_complexity 1 36 0 24 77 0 0 chr4 175774309 175774361 -26553986 + AT_rich Low_complexity Low_complexity 1 52 0 356 260 160 56 chr4 175774361 175774911 -26553436 - L1MEc LINE L1 -3228 2901 2295 452 360 69 31 chr4 175775161 175775583 -26552764 - L1MEc LINE L1 -4572 1738 1301 762 292 67 69 chr4 175775585 175776758 -26551589 - L1MEc LINE L1 -4867 1252 1 410 282 14 56 chr4 175776841 175776983 -26551364 + L2 LINE L2 3174 3309 -4 31 26 0 0 chr4 175777236 175777274 -26551073 + AT_rich Low_complexity Low_complexity 1 38 0 303 292 212 51 chr4 175777947 175778395 -26549952 + L2 LINE L2 2230 2749 -565 186 43 0 0 chr4 175778916 175778939 -26549408 + (TG)n Simple_repeat Simple_repeat 2 24 0 408 256 90 76 chr4 175779002 175779213 -26549134 - MER20B DNA MER1_type -5 214 1 1335 300 151 2 chr4 175779692 175780202 -26548145 + MLT1G LTR MaLR 2 587 -3 324 0 0 0 chr4 175780202 175780238 -26548109 + (TG)n Simple_repeat Simple_repeat 2 37 0 269 305 0 0 chr4 175780238 175780252 -26548095 + (TA)n Simple_repeat Simple_repeat 2 15 -81 2204 177 47 0 chr4 175780252 175780658 -26547689 + MSTA LTR MaLR 1 425 -3 269 305 0 0 chr4 175780658 175780738 -26547609 + (TA)n Simple_repeat Simple_repeat 14 96 0 1373 295 98 19 chr4 175781592 175782161 -26546186 + L2 LINE L2 2364 2977 -337 420 272 24 41 chr4 175782248 175782417 -26545930 - L1MC5 LINE L1 -65 7896 7731 494 258 41 77 chr4 175782455 175782676 -26545671 + L2 LINE L2 3091 3303 -10 180 0 0 0 chr4 175783921 175783941 -26544406 + (GA)n Simple_repeat Simple_repeat 1 20 0 1931 130 0 27 chr4 175783961 175784262 -26544085 + AluSc SINE Alu 1 293 -16 24 0 0 0 chr4 175784305 175784329 -26544018 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr4 175784544 175784575 -26543772 + AT_rich Low_complexity Low_complexity 1 31 0 2118 85 4 0 chr4 175784756 175785068 -26543279 - AluY SINE Alu 0 313 1 389 398 76 14 chr4 175785616 175785983 -26542364 - HAL1 LINE L1 -970 1537 1148 1418 181 35 97 chr4 175787679 175788050 -26540297 - MER7A DNA MER2_type 0 346 1 554 282 86 34 chr4 175789745 175789954 -26538393 - MIR SINE MIR -42 220 1 223 214 45 11 chr4 175790067 175790156 -26538191 + (TA)n Simple_repeat Simple_repeat 2 93 0 21 0 0 0 chr4 175790185 175790206 -26538141 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr4 175792159 175792183 -26536164 + (T)n Simple_repeat Simple_repeat 1 24 0 215 352 88 11 chr4 175793212 175793303 -26535044 + MIR3 SINE MIR 9 106 -102 4442 48 41 0 chr4 175795375 175795939 -26532408 - LTR14C LTR ERVK 0 587 1 238 241 133 0 chr4 175795965 175796048 -26532299 + L2 LINE L2 2968 3061 -211 341 236 24 39 chr4 175796667 175796794 -26531553 - MER113 DNA MER1_type? -358 163 39 1575 164 74 0 chr4 175796829 175797098 -26531249 - AluSg SINE Alu -21 289 1 311 360 7 7 chr4 175797860 175797999 -26530348 + L2 LINE L2 2224 2362 -952 442 215 50 8 chr4 175799108 175799229 -26529118 - MIR SINE MIR -3 259 134 2610 147 18 2 chr4 175799420 175799868 -26528479 + L1PA14 LINE L1 5705 6159 -2 2013 204 24 5 chr4 175799877 175799963 -26528384 + L1M2 LINE L1 5389 5472 -819 2125 97 0 7 chr4 175799963 175800241 -26528106 + AluSq SINE Alu 1 276 -37 2013 204 24 5 chr4 175800241 175800547 -26527800 + L1M2 LINE L1 5472 5792 -499 261 0 0 0 chr4 175800547 175800576 -26527771 + (TG)n Simple_repeat Simple_repeat 2 30 0 2013 204 24 5 chr4 175800576 175800608 -26527739 + L1M2 LINE L1 5792 5822 -469 9499 175 60 64 chr4 175800616 175801446 -26526901 - L1MEd LINE L1 -745 6361 5530 588 193 0 79 chr4 175801446 175801586 -26526761 + FLAM_C SINE Alu 8 136 -7 9499 175 60 64 chr4 175801586 175803155 -26525192 - L1MEd LINE L1 -1576 5530 3832 316 70 18 18 chr4 175803156 175803213 -26525134 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 23114 67 5 2 chr4 175803213 175807090 -26521257 - L1PA6 LINE L1 -16 6138 2245 5300 151 72 28 chr4 175807090 175808059 -26520288 - L1PA6 LINE L1 -5124 1022 11 838 255 64 0 chr4 175808070 175808321 -26520026 - L1MEd LINE L1 -3272 3834 3568 2762 189 63 19 chr4 175808321 175808687 -26519660 + MER73 LTR ERVL 1 406 -238 2330 85 10 0 chr4 175808687 175808994 -26519353 + AluY SINE Alu 1 310 -1 2762 189 63 19 chr4 175808994 175809242 -26519105 + MER73 LTR ERVL 406 642 -2 2857 263 54 64 chr4 175809244 175810994 -26517353 - L1 LINE L1 -3534 3572 2164 207 0 0 0 chr4 175810994 175811017 -26517330 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2857 263 54 64 chr4 175811017 175812428 -26515919 - L1 LINE L1 -4942 2164 740 484 275 67 80 chr4 175812477 175812804 -26515543 - L1MEd LINE L1 -5227 1869 1547 27 0 0 0 chr4 175812816 175812843 -26515504 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr4 175813582 175813606 -26514741 + AT_rich Low_complexity Low_complexity 1 24 0 285 29 0 0 chr4 175813649 175813683 -26514664 + (CA)n Simple_repeat Simple_repeat 1 34 0 1753 199 15 9 chr4 175814542 175814884 -26513463 - MER2 DNA MER2_type 0 344 1 24 0 0 0 chr4 175815219 175815243 -26513104 + AT_rich Low_complexity Low_complexity 1 24 0 210 156 0 0 chr4 175816102 175816147 -26512200 + GA-rich Low_complexity Low_complexity 6 50 0 2206 125 0 0 chr4 175816576 175816889 -26511458 + AluSq SINE Alu 1 313 0 509 245 96 38 chr4 175817304 175817527 -26510820 + L1MB8 LINE L1 5859 6100 -83 2158 122 0 0 chr4 175817822 175818126 -26510221 + AluSq SINE Alu 1 304 -9 674 151 14 14 chr4 175818390 175818529 -26509818 + L1MB8 LINE L1 6031 6169 -9 2116 118 0 0 chr4 175818540 175818827 -26509520 - AluSx SINE Alu -25 287 1 24 32 0 0 chr4 175818827 175818858 -26509489 + AT_rich Low_complexity Low_complexity 1 31 0 201 39 0 0 chr4 175819114 175819140 -26509207 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 708 341 60 46 chr4 175820663 175820833 -26507514 + L2 LINE L2 1111 1277 -2036 2091 134 0 0 chr4 175820833 175821131 -26507216 - AluSx SINE Alu -8 304 7 708 341 60 46 chr4 175821131 175821676 -26506671 + L2 LINE L2 1277 3311 -2 2426 80 0 10 chr4 175822256 175822569 -26505778 - AluSg SINE Alu 0 310 1 24 67 0 0 chr4 175822868 175822913 -26505434 + AT_rich Low_complexity Low_complexity 1 45 0 2469 43 7 3 chr4 175823375 175823674 -26504673 + AluY SINE Alu 1 300 -11 207 0 0 0 chr4 175823674 175823697 -26504650 + (TA)n Simple_repeat Simple_repeat 2 24 0 417 123 0 0 chr4 175823697 175823762 -26504585 + (CA)n Simple_repeat Simple_repeat 2 66 0 21 0 0 0 chr4 175823918 175823939 -26504408 + AT_rich Low_complexity Low_complexity 1 21 0 393 305 125 3 chr4 175825345 175825567 -26502780 + HERVL LTR ERVL 2553 2771 -2883 2155 255 53 49 chr4 175825775 175826845 -26501502 - L1MEc LINE L1 -4957 1439 365 260 209 30 0 chr4 175826857 175826924 -26501423 + L1MA7 LINE L1 5972 6040 -251 2223 143 99 53 chr4 175826927 175827380 -26500967 + L1PA16 LINE L1 5693 6166 0 1242 145 68 0 chr4 175827381 175827629 -26500718 + L1MA9 LINE L1 6046 6310 -2 27 0 0 0 chr4 175829472 175829499 -26498848 + AT_rich Low_complexity Low_complexity 1 27 0 7428 29 11 21 chr4 175829499 175830722 -26497625 - L1PA4 LINE L1 -3 6152 4936 206 206 16 0 chr4 175830724 175830787 -26497560 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 243 185 19 0 chr4 175830853 175830907 -26497440 + (CA)n Simple_repeat Simple_repeat 2 56 0 642 220 66 62 chr4 175830948 175831175 -26497172 + MLT1D LTR MaLR 1 228 -277 527 314 5 38 chr4 175832582 175832792 -26495555 - MLT1I LTR MaLR -12 397 195 237 261 0 0 chr4 175832811 175832899 -26495448 + (TA)n Simple_repeat Simple_repeat 1 88 0 625 207 80 27 chr4 175833023 175833173 -26495174 - MER63A DNA MER1_type 0 210 53 39 80 0 0 chr4 175833844 175833932 -26494415 + AT_rich Low_complexity Low_complexity 1 88 0 29 47 0 0 chr4 175834140 175834183 -26494164 + AT_rich Low_complexity Low_complexity 1 43 0 273 105 0 0 chr4 175834650 175834688 -26493659 - U2 snRNA snRNA -150 38 1 21 0 0 0 chr4 175834808 175834829 -26493518 + AT_rich Low_complexity Low_complexity 1 21 0 3982 197 29 85 chr4 175835165 175835439 -26492908 + L1MB3 LINE L1 4166 4454 -1729 2151 71 21 0 chr4 175835439 175835719 -26492628 + AluY SINE Alu 1 286 -25 3982 197 29 85 chr4 175835719 175837590 -26490757 + L1MB3 LINE L1 4454 6181 -2 21 57 0 0 chr4 175837713 175837748 -26490599 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 175837770 175837791 -26490556 + AT_rich Low_complexity Low_complexity 1 21 0 406 284 113 81 chr4 175838796 175839539 -26488808 + L1 LINE L1 2339 3105 -3041 287 308 79 21 chr4 175839999 175840239 -26488108 + L1 LINE L1 3529 3782 -2364 22 35 0 0 chr4 175840315 175840344 -26488003 + AT_rich Low_complexity Low_complexity 1 29 0 1455 108 108 4 chr4 175841035 175841275 -26487072 - L1PA8 LINE L1 -6 6166 5902 24 32 0 0 chr4 175841900 175841931 -26486416 + AT_rich Low_complexity Low_complexity 1 31 0 341 236 179 42 chr4 175842308 175842571 -26485776 + Charlie2 DNA MER1_type 2532 2830 -32 246 288 91 23 chr4 175842583 175842715 -26485632 + L2 LINE L2 2150 2290 -1024 831 232 191 0 chr4 175842850 175843122 -26485225 + MER33 DNA MER1_type 1 324 0 206 105 26 0 chr4 175843126 175843164 -26485183 + (TATAA)n Simple_repeat Simple_repeat 2 40 0 338 293 100 33 chr4 175843180 175843330 -26485017 - L2 LINE L2 -232 3081 2922 289 348 71 5 chr4 175843453 175843637 -26484710 + L2 LINE L2 2475 2670 -644 437 309 106 9 chr4 175843663 175843880 -26484467 - MLT1I LTR MaLR -41 368 131 21 36 0 0 chr4 175844054 175844082 -26484265 + AT_rich Low_complexity Low_complexity 1 28 0 226 224 0 0 chr4 175846297 175846346 -26482001 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 2078 175 24 112 chr4 175846765 175847381 -26480966 - L1 LINE L1 -1798 4348 3787 1845 174 58 40 chr4 175847381 175847915 -26480432 + MLT2A2 LTR ERVL 1 554 0 838 208 73 0 chr4 175847915 175848107 -26480240 - L1 LINE L1 -2355 3791 3586 * 4132 188 17 26 chr4 175848093 175849259 -26479088 + L1M2 LINE L1 4475 5623 -689 231 0 0 71 chr4 175849312 175849354 -26478993 + (CATA)n Simple_repeat Simple_repeat 2 40 0 30 59 0 0 chr4 175849400 175849451 -26478896 + AT_rich Low_complexity Low_complexity 1 51 0 210 271 0 34 chr4 175849516 175849634 -26478713 + T-rich Low_complexity Low_complexity 4 117 0 229 331 47 63 chr4 175850338 175850465 -26477882 - MER91A DNA MER1_type -50 146 22 206 250 14 0 chr4 175850646 175850718 -26477629 + CT-rich Low_complexity Low_complexity 4 76 0 471 94 0 0 chr4 175850888 175850952 -26477395 + MLT1A2 LTR MaLR 264 327 -47 23 33 0 0 chr4 175851588 175851618 -26476729 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr4 175851641 175851678 -26476669 + AT_rich Low_complexity Low_complexity 1 37 0 1330 209 118 6 chr4 175852113 175852434 -26475913 - L1PA16 LINE L1 0 6166 5810 343 228 38 13 chr4 175853493 175853572 -26474775 + Tigger5 DNA MER2_type 1 81 -2242 13031 36 0 0 chr4 175853572 175855166 -26473181 - L1PA3 LINE L1 -1887 4259 2666 9100 33 0 0 chr4 175855166 175857046 -26471301 + L1PA3 LINE L1 4272 6151 -4 1432 160 23 4 chr4 175857075 175857331 -26471016 + Tigger5 DNA MER2_type 2062 2322 -1 353 236 0 0 chr4 175857931 175858003 -26470344 - Tigger5 DNA MER2_type -1 2322 2251 281 211 0 0 chr4 175857972 175858024 -26470323 - Tigger5 DNA MER2_type -2268 55 4 * 1597 128 103 11 chr4 175858086 175858359 -26469988 - AluSx SINE Alu -9 303 6 371 279 0 0 chr4 175859309 175859388 -26468959 + MER77 LTR ERV1 523 601 -4 274 91 23 0 chr4 175859501 175859545 -26468802 + MADE1 DNA Mariner 6 50 -30 29 47 0 0 chr4 175860845 175860888 -26467459 + AT_rich Low_complexity Low_complexity 1 43 0 1822 128 33 7 chr4 175861891 175862208 -26466139 + AluSg SINE Alu 1 324 0 23 0 0 0 chr4 175862433 175862456 -26465891 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 175862759 175862784 -26465563 + AT_rich Low_complexity Low_complexity 1 25 0 1889 152 0 17 chr4 175862818 175863114 -26465233 - AluSx SINE Alu -21 291 1 6424 198 167 30 chr4 175863671 175865215 -26463132 - MER52A LTR ERV1 0 1755 1 536 214 53 71 chr4 175865317 175865575 -26462772 + MSTD LTR MaLR 1 253 -112 2028 169 102 0 chr4 175865575 175865966 -26462381 + LTR51 LTR ERV1 1 431 -240 773 168 8 0 chr4 175865969 175866100 -26462247 + LTR51 LTR ERV1 540 671 0 540 143 44 0 chr4 175866124 175866215 -26462132 + MSTD LTR MaLR 302 396 0 6065 239 90 32 chr4 175866215 175867849 -26460498 + MSTD-int LTR MaLR 1 1729 -6 886 237 59 32 chr4 175867850 175868187 -26460160 + MSTD LTR MaLR 4 396 0 531 250 245 5 chr4 175868594 175868778 -26459569 - MIR SINE MIR -1 261 34 278 207 52 0 chr4 175868914 175868972 -26459375 - MER5B DNA MER1_type -117 61 1 32 0 0 0 chr4 175869031 175869063 -26459284 + AT_rich Low_complexity Low_complexity 1 32 0 203 227 15 0 chr4 175869435 175869501 -26458846 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 330 325 96 38 chr4 175870336 175870963 -26457384 + HAL1b LINE L1 7 669 -679 26 30 0 0 chr4 175871413 175871446 -26456901 + AT_rich Low_complexity Low_complexity 1 33 0 322 322 107 9 chr4 175872167 175872400 -26455947 - L1M4 LINE L1 -1603 4543 4288 25 0 0 0 chr4 175873212 175873237 -26455110 + AT_rich Low_complexity Low_complexity 1 25 0 21 82 0 0 chr4 175873526 175873575 -26454772 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 175873805 175873826 -26454521 + AT_rich Low_complexity Low_complexity 1 21 0 1803 123 0 0 chr4 175874190 175874443 -26453904 + AluSq SINE Alu 1 253 -60 25 51 0 0 chr4 175874678 175874717 -26453630 + AT_rich Low_complexity Low_complexity 1 39 0 32 26 0 0 chr4 175874808 175874847 -26453500 + AT_rich Low_complexity Low_complexity 1 39 0 243 317 73 0 chr4 175874921 175875085 -26453262 - Zaphod DNA AcHobo -3438 593 418 21 0 0 0 chr4 175875566 175875587 -26452760 + AT_rich Low_complexity Low_complexity 1 21 0 622 272 30 60 chr4 175876925 175877157 -26451190 + MIR SINE MIR 12 236 -26 2024 128 62 14 chr4 175877163 175877521 -26450826 + THE1C LTR MaLR 1 375 0 10093 128 9 29 chr4 175877521 175879132 -26449215 + THE1C-int LTR MaLR 1 1580 0 842 151 8 0 chr4 175879134 175879260 -26449087 + THE1C LTR MaLR 3 129 -246 328 118 13 145 chr4 175879253 175879275 -26449072 + THE1C LTR MaLR 310 333 -42 * 2690 88 3 0 chr4 175879275 175879627 -26448720 + THE1A LTR MaLR 1 353 -2 10788 125 5 2 chr4 175879630 175881205 -26447142 + THE1A-int LTR MaLR 2 1580 0 1988 171 32 0 chr4 175881205 175881549 -26446798 + THE1A LTR MaLR 1 355 0 328 118 13 145 chr4 175881549 175881597 -26446750 + THE1C LTR MaLR 333 375 0 404 185 43 22 chr4 175881658 175881750 -26446597 + Tigger5 DNA MER2_type 2 95 -2228 294 136 0 0 chr4 175881749 175881793 -26446554 + Tigger5 DNA MER2_type 2280 2323 0 * 23 0 0 0 chr4 175881950 175881973 -26446374 + AT_rich Low_complexity Low_complexity 1 23 0 2138 121 0 7 chr4 175882040 175882338 -26446009 + AluSg SINE Alu 1 296 -14 29 84 0 0 chr4 175883486 175883557 -26444790 + AT_rich Low_complexity Low_complexity 1 71 0 609 265 85 14 chr4 175884629 175884840 -26443507 - MIR SINE MIR 0 262 37 36 23 0 0 chr4 175884992 175885035 -26443312 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 175885366 175885387 -26442960 + AT_rich Low_complexity Low_complexity 1 21 0 216 286 0 16 chr4 175885828 175885891 -26442456 - MIR SINE MIR -7 255 194 339 208 78 0 chr4 175885922 175885999 -26442348 - MER97c DNA MER1_type? 0 1090 1008 244 270 90 22 chr4 175886317 175886406 -26441941 + MLT1L LTR MaLR 296 390 -225 2085 95 0 11 chr4 175886431 175886716 -26441631 + AluY SINE Alu 1 282 -29 200 191 21 0 chr4 175887078 175887125 -26441222 + L2 LINE L2 3266 3313 0 1655 146 98 9 chr4 175888735 175889050 -26439297 - MER61A LTR ERV1 0 343 1 23934 99 30 20 chr4 175889053 175892604 -26435743 - MER61A-int LTR ERV1 -4 5213 1542 1678 109 0 0 chr4 175892604 175892860 -26435487 - AluSc SINE Alu 0 316 61 23934 99 30 20 chr4 175892860 175892997 -26435350 - MER61A-int LTR ERV1 -3675 1542 1408 392 138 33 27 chr4 175893025 175893138 -26435209 - MER61A-int LTR ERV1 -4440 777 631 2184 171 60 33 chr4 175893222 175893708 -26434639 - MER61A-int LTR ERV1 -4718 499 1 1585 151 94 16 chr4 175893708 175894026 -26434321 - MER61A LTR ERV1 0 343 1 390 279 172 7 chr4 175894026 175894270 -26434077 - LTR50 LTR ERVL -198 597 217 253 275 58 0 chr4 175894272 175894341 -26434006 - LTR50 LTR ERVL -722 73 1 27 29 0 0 chr4 175894658 175894692 -26433655 + AT_rich Low_complexity Low_complexity 1 34 0 3646 219 82 7 chr4 175895192 175896327 -26432020 + L1MB7 LINE L1 4109 5333 -824 518 221 0 80 chr4 175896329 175896440 -26431907 + L1MB1 LINE L1 6023 6119 -70 1600 197 32 3 chr4 175896440 175896724 -26431623 + AluJb SINE Alu 3 294 -18 518 221 0 80 chr4 175896724 175896775 -26431572 + L1MB1 LINE L1 6119 6172 -17 2873 197 91 24 chr4 175896802 175897605 -26430742 + L1MB7 LINE L1 5318 6174 -10 23 86 0 0 chr4 175898813 175898871 -26429476 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr4 175899245 175899267 -26429080 + AT_rich Low_complexity Low_complexity 1 22 0 1934 137 85 20 chr4 175899273 175899615 -26428732 - THE1B LTR MaLR 0 364 1 11576 103 6 1 chr4 175899615 175901186 -26427161 - THE1B-int LTR MaLR 0 1580 1 1959 140 63 20 chr4 175901186 175901535 -26426812 - THE1B LTR MaLR 0 364 1 191 316 137 0 chr4 175901892 175901987 -26426360 - L2 LINE L2 -7 3306 3199 534 104 0 0 chr4 175902045 175902122 -26426225 - THE1-int LTR MaLR -1338 242 166 567 212 71 114 chr4 175902165 175902668 -26425679 + LTR27 LTR ERV1 283 1305 -141 917 279 110 23 chr4 175902873 175903300 -26425047 - L1ME3A LINE L1 -214 5956 5493 884 195 0 0 chr4 175903622 175903771 -26424576 - AluSg/x SINE Alu -9 301 153 30 59 0 0 chr4 175904165 175904216 -26424131 + AT_rich Low_complexity Low_complexity 1 51 0 33 25 0 0 chr4 175904249 175904289 -26424058 + AT_rich Low_complexity Low_complexity 1 40 0 24 53 0 0 chr4 175904903 175904941 -26423406 + AT_rich Low_complexity Low_complexity 1 38 0 904 84 8 0 chr4 175907474 175907593 -26420754 + AluSq SINE Alu 1 120 -192 2448 89 130 5 chr4 175907593 175907985 -26420362 + LTR7 LTR ERV1 1 441 -9 15779 95 33 22 chr4 175907994 175910836 -26417511 + HERVH LTR ERV1 1 2995 -4718 6258 76 5 2 chr4 175910815 175911666 -26416681 + HERVH LTR ERV1 3140 3992 -3721 * 4414 142 0 1 chr4 175911669 175912332 -26416015 + HERVH LTR ERV1 4488 5149 -2564 1327 131 28 0 chr4 175912333 175912547 -26415800 + HERVH LTR ERV1 5600 5819 -1894 * 2349 103 50 13 chr4 175912545 175912923 -26415424 + HERVH LTR ERV1 7322 7713 0 2596 80 122 5 chr4 175912923 175913324 -26415023 + LTR7 LTR ERV1 1 448 -2 1291 140 5 0 chr4 175913326 175913519 -26414828 + AluSq SINE Alu 115 308 -5 281 24 49 0 chr4 175914193 175914234 -26414113 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 571 288 24 36 chr4 175914708 175914958 -26413389 + L1M4b LINE L1 1279 1525 -5334 473 207 77 0 chr4 175914952 175915121 -26413226 + L1M4 LINE L1 3120 3301 -2845 * 372 270 10 0 chr4 175915127 175915227 -26413120 - MIR SINE MIR -71 191 91 1866 309 59 45 chr4 175915256 175915398 -26412949 - L2 LINE L2 -32 3281 3142 273 57 0 0 chr4 175915398 175915433 -26412914 + (CA)n Simple_repeat Simple_repeat 1 35 0 1866 309 59 45 chr4 175915433 175916500 -26411847 - L2 LINE L2 -171 3142 2013 575 255 51 57 chr4 175916500 175916883 -26411464 - MLT1H LTR MaLR 0 589 123 222 197 136 0 chr4 175916963 175917029 -26411318 - L2 LINE L2 -1300 2014 1940 24 85 0 0 chr4 175917491 175917550 -26410797 + AT_rich Low_complexity Low_complexity 1 59 0 258 321 115 51 chr4 175918857 175919153 -26409194 + L2 LINE L2 2998 3312 -1 2291 115 80 3 chr4 175919653 175919991 -26408356 + THE1B LTR MaLR 1 364 0 1258 307 72 19 chr4 175922092 175923032 -26405315 + L1M4b LINE L1 1672 2818 -4320 436 225 45 45 chr4 175923070 175923248 -26405099 + L1MEc LINE L1 665 842 -5554 1772 126 0 4 chr4 175923537 175923807 -26404540 + AluSx SINE Alu 39 307 -5 2853 163 26 23 chr4 175923815 175924380 -26403967 - LTR60 LTR ERV1 -19 567 1 2036 249 44 29 chr4 175924406 175924557 -26403790 + L1ME1 LINE L1 5336 5483 -683 2451 48 3 7 chr4 175924557 175924867 -26403480 + AluY SINE Alu 1 309 -2 2036 249 44 29 chr4 175924867 175925370 -26402977 + L1ME1 LINE L1 5483 6000 -166 248 274 62 9 chr4 175925377 175925490 -26402857 + L1ME1 LINE L1 6045 6163 -3 198 0 0 0 chr4 175925835 175925857 -26402490 + (T)n Simple_repeat Simple_repeat 1 22 0 373 268 95 26 chr4 175926345 175926535 -26401812 - MLT1G-int LTR MaLR -839 532 330 459 299 98 22 chr4 175926739 175926963 -26401384 - MLT1G LTR MaLR -117 473 233 23 68 0 0 chr4 175928098 175928142 -26400205 + AT_rich Low_complexity Low_complexity 1 44 0 185 340 87 29 chr4 175928856 175928959 -26399388 + L2 LINE L2 3155 3263 -9 188 304 58 29 chr4 175928970 175929039 -26399308 - L2 LINE L2 -217 3055 2985 4525 205 102 35 chr4 175929542 175930539 -26397808 + L1PBa LINE L1 944 2038 -4825 2176 47 25 78 chr4 175930539 175930859 -26397488 + AluY SINE Alu 1 303 -8 4525 205 102 35 chr4 175930859 175931072 -26397275 + L1PBa LINE L1 2038 2235 -4628 3994 203 37 30 chr4 175931070 175932014 -26396333 + L1 LINE L1 3655 4605 -1541 * 1113 198 48 8 chr4 175932007 175932275 -26396072 + L1 LINE L1 4809 5087 -1059 * 22 0 0 0 chr4 175932404 175932426 -26395921 + AT_rich Low_complexity Low_complexity 1 22 0 487 337 90 34 chr4 175932599 175933101 -26395246 + L1M4 LINE L1 4063 4592 -1554 303 284 74 35 chr4 175933559 175933925 -26394422 + L1MEc LINE L1 787 1166 -5230 231 194 48 0 chr4 175934520 175934582 -26393765 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 259 255 11 43 chr4 175934617 175934711 -26393636 + L1MEc LINE L1 1246 1336 -4879 2241 118 0 0 chr4 175934790 175935094 -26393253 - AluSx SINE Alu 0 312 9 367 290 86 41 chr4 175935170 175935415 -26392932 + L1MEc LINE L1 1543 1798 -4598 221 139 163 0 chr4 175936565 175936608 -26391739 + L2 LINE L2 3264 3313 0 22 0 0 0 chr4 175936837 175936859 -26391488 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 175938623 175938653 -26389694 + AT_rich Low_complexity Low_complexity 1 30 0 2060 108 0 0 chr4 175938759 175939027 -26389320 + AluSg SINE Alu 3 270 -40 243 0 0 0 chr4 175939035 175939062 -26389285 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 7468 225 14 17 chr4 175939081 175939555 -26388792 - L1 LINE L1 -2059 5506 5032 2335 111 6 22 chr4 175939555 175939916 -26388431 - THE1A LTR MaLR 0 355 1 10799 110 15 1 chr4 175939916 175941473 -26386874 - THE1A-int LTR MaLR 0 1580 1 2282 118 6 8 chr4 175941473 175941829 -26386518 - THE1A LTR MaLR 0 355 1 7468 225 14 17 chr4 175941829 175943204 -26385143 - L1 LINE L1 -2530 5035 3662 3974 135 11 7 chr4 175943204 175943813 -26384534 + LTR9 LTR ERV1 1 612 0 908 196 40 12 chr4 175943818 175943991 -26384356 + HUERS-P3 LTR ERV1 5 182 -8737 14844 152 28 62 chr4 175943992 175944699 -26383648 - L1 LINE L1 -4858 2707 1978 1651 199 13 0 chr4 175944699 175945005 -26383342 - AluSx SINE Alu -2 310 1 14844 152 28 62 chr4 175945005 175947085 -26381262 - L1 LINE L1 -5587 1978 14 622 272 52 5 chr4 175947915 175948128 -26380219 - MER58A DNA MER1_type 0 224 2 209 261 11 0 chr4 175948893 175948981 -26379366 + (TA)n Simple_repeat Simple_repeat 2 90 0 959 232 43 92 chr4 175949256 175949670 -26378677 - MSTD LTR MaLR -2 394 1 221 372 56 41 chr4 175950006 175950202 -26378145 - L2 LINE L2 -108 3164 2966 21 0 0 0 chr4 175951596 175951617 -26376730 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr4 175952753 175952796 -26375551 + AT_rich Low_complexity Low_complexity 1 43 0 799 178 55 6 chr4 175953381 175953544 -26374803 - L1PA16 LINE L1 -4 6162 5992 2919 175 59 20 chr4 175955575 175956187 -26372160 + MER73 LTR ERVL 3 638 -6 389 308 70 19 chr4 175956195 175956351 -26371996 - MIR SINE MIR -75 187 24 1013 202 22 169 chr4 175957164 175957743 -26370604 - L1M4 LINE L1 -1778 4368 3875 305 186 143 14 chr4 175957748 175957818 -26370529 - MER58B DNA MER1_type -3 338 260 876 272 107 20 chr4 175957944 175958393 -26369954 - L1M4 LINE L1 -2277 3869 3382 660 249 47 4 chr4 175958496 175958729 -26369618 - L1M4 LINE L1 -3167 2979 2737 13159 197 59 16 chr4 175958729 175961425 -26366922 + ERVL LTR ERVL 2952 5764 0 2514 192 58 48 chr4 175962346 175962854 -26365493 - L1MA9 LINE L1 0 6312 5810 678 85 0 0 chr4 175962854 175962948 -26365399 + (TA)n Simple_repeat Simple_repeat 1 94 0 2514 192 58 48 chr4 175962948 175963090 -26365257 - L1MA9 LINE L1 -502 5810 5653 5123 121 14 22 chr4 175963090 175964823 -26363524 - L1PA16 LINE L1 -1 6165 4480 590 190 31 49 chr4 175964840 175965003 -26363344 + L1 LINE L1 2906 3065 -3081 2469 214 7 5 chr4 175965014 175965571 -26362776 - L1MA9 LINE L1 -1677 4469 3912 2458 152 29 19 chr4 175965569 175966351 -26361996 - L1M2 LINE L1 -613 5678 4895 * 7118 195 58 31 chr4 175966364 175967858 -26360489 + L1 LINE L1 2916 4476 -1670 2024 125 0 11 chr4 175967858 175968170 -26360177 + AluSx SINE Alu 1 309 0 7118 195 58 31 chr4 175968170 175968588 -26359759 + L1 LINE L1 4476 4881 -1265 422 308 46 27 chr4 175971257 175971517 -26356830 + L1M4 LINE L1 2393 2657 -3489 396 0 0 0 chr4 176171582 176171626 -26156721 + (CA)n Simple_repeat Simple_repeat 2 45 0 30 45 0 0 chr4 176173199 176173243 -26155104 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr4 176173304 176173332 -26155015 + AT_rich Low_complexity Low_complexity 1 28 0 418 337 130 37 chr4 176173971 176174348 -26153999 + L2 LINE L2 2893 3304 -9 310 268 129 110 chr4 176175581 176175898 -26152449 - L2 LINE L2 -9 3263 2941 358 253 24 84 chr4 176176406 176176572 -26151775 + MER63 DNA MER1_type 3 784 -278 28 0 0 0 chr4 176177188 176177216 -26151131 + AT_rich Low_complexity Low_complexity 1 28 0 1441 213 63 2 chr4 176177378 176177824 -26150523 - Charlie5 DNA MER1_type 0 2624 2152 2638 213 69 12 chr4 176177826 176178656 -26149691 - MER3 DNA MER1_type 0 1406 530 458 213 50 21 chr4 176178718 176178859 -26149488 - MER3 DNA MER1_type 0 280 136 315 0 0 0 chr4 176178904 176178939 -26149408 + (TA)n Simple_repeat Simple_repeat 2 36 0 1522 216 136 48 chr4 176179055 176179532 -26148815 - MLT2B3 LTR ERVL -35 519 1 491 190 9 35 chr4 176179548 176179664 -26148683 - MER3 DNA MER1_type -59 150 38 28 0 0 0 chr4 176180144 176180172 -26148175 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 176181720 176181741 -26146606 + AT_rich Low_complexity Low_complexity 1 21 0 234 369 70 22 chr4 176181783 176182145 -26146202 + L2 LINE L2 2646 3008 -264 267 309 137 23 chr4 176182162 176182337 -26146010 + L2 LINE L2 3118 3312 -1 245 237 8 23 chr4 176185193 176185324 -26143023 + (TA)n Simple_repeat Simple_repeat 1 129 0 285 156 0 0 chr4 176185338 176185383 -26142964 - MSTA LTR MaLR 0 428 384 2333 84 0 10 chr4 176185384 176185692 -26142655 + AluY SINE Alu 6 310 -1 4066 121 18 0 chr4 176185706 176186334 -26142013 - L1PA10 LINE L1 -1166 4980 4342 6356 98 10 1 chr4 176186341 176187509 -26140838 + L1PA10 LINE L1 4976 6157 -11 663 78 0 0 chr4 176187511 176187601 -26140746 + (TA)n Simple_repeat Simple_repeat 2 91 0 2137 154 33 26 chr4 176187603 176187993 -26140354 - MSTA LTR MaLR -35 393 1 32 26 0 0 chr4 176188091 176188130 -26140217 + AT_rich Low_complexity Low_complexity 1 39 0 257 298 45 58 chr4 176188244 176188486 -26139861 - L1ME LINE L1 -216 5905 5667 30 0 0 0 chr4 176188790 176188820 -26139527 + AT_rich Low_complexity Low_complexity 1 30 0 33 66 0 0 chr4 176188937 176188998 -26139349 + AT_rich Low_complexity Low_complexity 1 61 0 204 183 0 33 chr4 176189089 176189149 -26139198 + (TA)n Simple_repeat Simple_repeat 1 58 0 604 204 14 75 chr4 176189171 176189318 -26139029 - AluJo SINE Alu -54 258 121 25 65 0 0 chr4 176189516 176189562 -26138785 + AT_rich Low_complexity Low_complexity 1 46 0 5675 108 17 19 chr4 176189568 176190169 -26138178 + HERVL LTR ERVL 1121 1722 -3932 2206 95 0 3 chr4 176190169 176190484 -26137863 + AluSq SINE Alu 3 316 0 5675 108 17 19 chr4 176190484 176190705 -26137642 + HERVL LTR ERVL 1722 1942 -3712 430 130 0 0 chr4 176190705 176190774 -26137573 + MLT2A2 LTR ERVL 378 446 -7 4637 218 58 73 chr4 176190780 176192578 -26135769 - L1 LINE L1 -2164 4568 2799 1419 164 144 25 chr4 176192591 176192993 -26135354 - LTR7 LTR ERV1 0 450 1 1346 101 13 31 chr4 176192993 176193221 -26135126 - HERVH LTR ERV1 0 7713 7490 980 155 6 0 chr4 176193211 176193372 -26134975 + HERVH LTR ERV1 6787 6948 -765 * 296 125 0 78 chr4 176193358 176193422 -26134925 + HERVH LTR ERV1 7655 7713 0 * 3491 119 7 4 chr4 176193423 176193962 -26134385 + HERVH LTR ERV1 7173 7713 0 1727 166 120 20 chr4 176193962 176194371 -26133976 + LTR7 LTR ERV1 1 450 0 8503 271 65 16 chr4 176194379 176197671 -26130676 - L1 LINE L1 -3931 2801 3 684 235 60 40 chr4 176197682 176197933 -26130414 - L1MC4a LINE L1 -376 7432 7177 * 1314 244 57 18 chr4 176197930 176198319 -26130028 - L1MC4a LINE L1 -1920 5888 5485 3435 69 0 7 chr4 176200057 176200508 -26127839 + LTR7 LTR ERV1 1 448 -2 20377 84 54 49 chr4 176200510 176203784 -26124563 + HERVH LTR ERV1 1 3290 -4423 3326 109 6 8 chr4 176203774 176204277 -26124070 + HERVH LTR ERV1 3492 3993 -3720 * 4423 137 1 5 chr4 176204279 176204950 -26123397 + HERVH LTR ERV1 4488 5156 -2557 1292 162 19 0 chr4 176204942 176205158 -26123189 + HERVH LTR ERV1 5600 5819 -1894 * 2562 71 45 13 chr4 176205156 176205536 -26122811 + HERVH LTR ERV1 7322 7713 0 3436 62 0 7 chr4 176205536 176205987 -26122360 + LTR7 LTR ERV1 1 448 -2 198 0 0 0 chr4 176206145 176206167 -26122180 + (TTA)n Simple_repeat Simple_repeat 1 22 0 1049 196 0 49 chr4 176206170 176206374 -26121973 - AluJo SINE Alu -33 279 86 2323 96 0 6 chr4 176206530 176206842 -26121505 + AluY SINE Alu 1 310 -1 180 0 0 0 chr4 176207335 176207355 -26120992 + (TG)n Simple_repeat Simple_repeat 1 20 0 5223 121 8 4 chr4 176209150 176209933 -26118414 - L1PA10 LINE L1 -11 6157 5372 2902 156 4 0 chr4 176209932 176210427 -26117920 + L1P LINE L1 4252 4748 -1398 * 2105 109 3 3 chr4 176210462 176210756 -26117591 + AluSc SINE Alu 1 294 -15 1420 205 101 12 chr4 176210883 176211278 -26117069 - MSTB LTR MaLR 0 426 1 2408 80 3 3 chr4 176212477 176212790 -26115557 + AluSq SINE Alu 1 313 0 779 232 59 28 chr4 176213158 176213412 -26114935 - MIR SINE MIR 0 262 1 285 349 23 15 chr4 176213484 176213616 -26114731 - MIR SINE MIR -87 175 43 308 284 58 25 chr4 176213904 176214027 -26114320 - MLT1I LTR MaLR -260 149 24 394 256 136 8 chr4 176214301 176214426 -26113921 - MIR SINE MIR 0 262 122 233 358 52 15 chr4 176214556 176214690 -26113657 - MIR SINE MIR -10 252 114 189 0 0 0 chr4 176216715 176216736 -26111611 + (CA)n Simple_repeat Simple_repeat 2 22 0 26 0 0 0 chr4 176218460 176218486 -26109861 + AT_rich Low_complexity Low_complexity 1 26 0 358 164 10 10 chr4 176218864 176218968 -26109379 + (CAT)n Simple_repeat Simple_repeat 1 104 0 1771 243 37 25 chr4 176219356 176219846 -26108501 + MLT1D LTR MaLR 8 503 -2 228 67 0 0 chr4 176220633 176220663 -26107684 + (TG)n Simple_repeat Simple_repeat 2 31 0 246 32 0 0 chr4 176222157 176222188 -26106159 + (TG)n Simple_repeat Simple_repeat 2 32 0 257 0 30 0 chr4 176222344 176222377 -26105970 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 6535 29 0 0 chr4 176222401 176223164 -26105183 - L1PA3 LINE L1 0 6155 5393 216 0 0 0 chr4 176223164 176223188 -26105159 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1885 165 0 0 chr4 176223188 176223473 -26104874 - AluSx SINE Alu -27 285 1 25 0 0 0 chr4 176223679 176223704 -26104643 + AT_rich Low_complexity Low_complexity 1 25 0 402 21 0 0 chr4 176224426 176224473 -26103874 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1938 138 0 0 chr4 176224475 176224758 -26103589 - AluSx SINE Alu -29 283 1 924 192 43 43 chr4 176225091 176225346 -26103001 + L1MD3 LINE L1 7741 7995 0 490 15 30 0 chr4 176226157 176226224 -26102123 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 394 216 0 14 chr4 176226805 176226879 -26101468 - MER2 DNA MER2_type -6 339 267 * 778 221 13 0 chr4 176226876 176227025 -26101322 - MER2 DNA MER2_type -194 151 1 28 29 0 0 chr4 176227222 176227257 -26101090 + AT_rich Low_complexity Low_complexity 1 35 0 39443 79 4 6 chr4 176227424 176233582 -26094765 + L1PA5 LINE L1 11 6154 0 23 0 0 0 chr4 176233582 176233605 -26094742 + AT_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chr4 176234073 176234117 -26094230 + AT_rich Low_complexity Low_complexity 1 44 0 27 49 0 0 chr4 176234421 176234462 -26093885 + AT_rich Low_complexity Low_complexity 1 41 0 252 322 69 11 chr4 176234877 176234964 -26093383 + MER91C DNA MER1_type 14 105 -35 1431 180 51 30 chr4 176235960 176236255 -26092092 - AluJb SINE Alu -11 301 1 225 94 0 0 chr4 176236475 176236507 -26091840 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 369 0 0 0 chr4 176236506 176236547 -26091800 + (CA)n Simple_repeat Simple_repeat 2 42 0 28 0 0 0 chr4 176237124 176237152 -26091195 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 176237221 176237246 -26091101 + AT_rich Low_complexity Low_complexity 1 25 0 187 209 23 0 chr4 176238823 176238866 -26089481 + MIR SINE MIR 144 187 -75 27 0 0 0 chr4 176238917 176238944 -26089403 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr4 176239036 176239059 -26089288 + AT_rich Low_complexity Low_complexity 1 23 0 42631 29 21 2 chr4 176239828 176245841 -26082506 + L1HS LINE L1 22 6155 0 2133 269 34 46 chr4 176246642 176247726 -26080621 + L1MEc LINE L1 1019 2089 -4307 693 314 105 42 chr4 176247735 176248069 -26080278 - MLT1E2 LTR MaLR 0 626 272 41115 65 2 0 chr4 176248130 176254257 -26074090 - L1PA5 LINE L1 -7 6147 11 788 167 45 80 chr4 176254262 176254460 -26073887 - MLT1E2 LTR MaLR -410 214 3 703 243 88 35 chr4 176254474 176254816 -26073531 + L1MEc LINE L1 2114 2473 -3923 193 148 46 37 chr4 176254913 176255021 -26073326 + (TTATA)n Simple_repeat Simple_repeat 5 113 0 182 311 122 0 chr4 176255327 176255417 -26072930 - MIR3 SINE MIR -43 165 65 23 54 0 0 chr4 176256509 176256546 -26071801 + AT_rich Low_complexity Low_complexity 1 37 0 1552 194 19 19 chr4 176256714 176257024 -26071323 - AluJb SINE Alu -2 310 1 367 183 183 61 chr4 176258860 176258975 -26069372 - MLT1E3 LTR MaLR -495 129 1 495 350 52 0 chr4 176258978 176259245 -26069102 - L2 LINE L2 -271 3042 2763 995 311 75 43 chr4 176259276 176259793 -26068554 - L2 LINE L2 -847 2467 1934 2104 122 0 0 chr4 176260065 176260391 -26067956 + AluSc SINE Alu 1 326 0 968 211 174 12 chr4 176261428 176261675 -26066672 + AluJo SINE Alu 2 288 -14 309 321 204 0 chr4 176261702 176261839 -26066508 + MIR SINE MIR 32 196 -66 183 245 106 43 chr4 176261842 176261936 -26066411 - MER5C DNA MER1_type -224 100 1 1668 295 89 32 chr4 176262583 176263960 -26064387 + L1ME LINE L1 6 1461 -4619 631 355 52 7 chr4 176263974 176264399 -26063948 + L1MCc LINE L1 25 468 -5955 1425 290 106 30 chr4 176264621 176265807 -26062540 + L1MCc LINE L1 822 2126 -4815 180 0 0 0 chr4 176265807 176265827 -26062520 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 1425 290 106 30 chr4 176265827 176265890 -26062457 + L1MCc LINE L1 2126 2183 -4758 1206 163 28 46 chr4 176265890 176266173 -26062174 - L1MA4 LINE L1 -1 6299 6022 983 261 98 17 chr4 176266175 176266592 -26061755 + L1MCc LINE L1 3189 3639 -3302 2011 138 0 0 chr4 176267013 176267303 -26061044 + AluSx SINE Alu 5 294 -18 22 0 0 0 chr4 176268364 176268386 -26059961 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 176268952 176268973 -26059374 + AT_rich Low_complexity Low_complexity 1 21 0 267 350 19 0 chr4 176269060 176269163 -26059184 - L3 LINE CR1 -364 1213 1109 878 313 67 8 chr4 176269820 176270178 -26058169 - L2 LINE L2 -1 3312 2934 25 75 0 0 chr4 176271454 176271507 -26056840 + AT_rich Low_complexity Low_complexity 1 53 0 264 204 134 13 chr4 176271615 176271772 -26056575 + MER31-int LTR ERV1 1310 1485 -3451 1938 128 4 4 chr4 176271832 176272113 -26056234 + AluSx SINE Alu 1 281 -31 219 36 0 0 chr4 176272116 176272144 -26056203 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 403 227 73 82 chr4 176272232 176272452 -26055895 + MER31-int LTR ERV1 1698 1915 -3021 22 56 0 0 chr4 176272497 176272533 -26055814 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr4 176272601 176272629 -26055718 + AT_rich Low_complexity Low_complexity 1 28 0 2161 108 3 0 chr4 176273081 176273377 -26054970 + AluSp SINE Alu 2 298 -15 547 350 7 29 chr4 176273612 176273889 -26054458 + L1MC/D LINE L1 5388 5658 -2150 605 261 64 79 chr4 176274026 176274356 -26053991 - L2 LINE L2 -1 3312 2988 22 80 0 0 chr4 176275462 176275512 -26052835 + AT_rich Low_complexity Low_complexity 1 50 0 214 183 33 17 chr4 176277156 176277216 -26051131 + (TTATA)n Simple_repeat Simple_repeat 1 61 0 1564 99 31 0 chr4 176277278 176277500 -26050847 + MER30 DNA MER1_type 2 230 0 531 275 83 31 chr4 176277502 176277983 -26050364 + HAL1 LINE L1 1313 1860 -647 216 0 0 0 chr4 176278143 176278167 -26050180 + (A)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr4 176278482 176278506 -26049841 + AT_rich Low_complexity Low_complexity 1 24 0 2352 90 3 0 chr4 176278564 176278874 -26049473 - AluSq SINE Alu -2 311 1 21 36 0 0 chr4 176279417 176279445 -26048902 + AT_rich Low_complexity Low_complexity 1 28 0 45 75 0 0 chr4 176279557 176279651 -26048696 + AT_rich Low_complexity Low_complexity 1 94 0 1616 200 31 28 chr4 176279798 176280153 -26048194 + MLT1A1 LTR MaLR 10 365 0 24 0 0 0 chr4 176281120 176281144 -26047203 + AT_rich Low_complexity Low_complexity 1 24 0 437 91 0 0 chr4 176281162 176281228 -26047119 - Alu SINE Alu -5 306 241 16938 135 35 26 chr4 176281852 176283832 -26044515 + Tigger3(Golem) DNA MER2_type 1 2016 -1013 2533 55 0 3 chr4 176283832 176284139 -26044208 + AluY SINE Alu 1 306 -5 16938 135 35 26 chr4 176284139 176285105 -26043242 + Tigger3(Golem) DNA MER2_type 2016 2972 -57 22 35 0 0 chr4 176285639 176285668 -26042679 + AT_rich Low_complexity Low_complexity 1 29 0 1293 209 54 22 chr4 176286322 176286638 -26041709 - MLT1A1 LTR MaLR -39 326 1 784 182 79 8 chr4 176288108 176288415 -26039932 - MLT1B LTR MaLR -12 378 1 23 54 0 0 chr4 176290475 176290512 -26037835 + AT_rich Low_complexity Low_complexity 1 37 0 1385 159 113 23 chr4 176290725 176291034 -26037313 - MER44D DNA MER2_type -1 608 2 234 116 0 0 chr4 176292108 176292151 -26036196 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1176 201 136 34 chr4 176292214 176292379 -26035968 + MLT1B LTR MaLR 1 148 -242 225 0 0 0 chr4 176292379 176292404 -26035943 + (TC)n Simple_repeat Simple_repeat 2 26 0 1176 201 136 34 chr4 176292404 176292592 -26035755 + MLT1B LTR MaLR 148 390 0 244 211 18 0 chr4 176293127 176293184 -26035163 + CT-rich Low_complexity Low_complexity 3 60 0 1576 250 159 24 chr4 176293642 176294182 -26034165 + MER90 LTR ERV1 2 614 0 344 297 121 31 chr4 176294377 176294798 -26033549 - L1M4 LINE L1 -2115 4031 3573 22 0 0 0 chr4 176294972 176294994 -26033353 + AT_rich Low_complexity Low_complexity 1 22 0 757 262 36 22 chr4 176295090 176295502 -26032845 - L1M4 LINE L1 -2944 3202 2785 245 282 94 12 chr4 176295543 176295628 -26032719 - L2 LINE L2 -1345 1969 1878 21 0 0 0 chr4 176296684 176296705 -26031642 + AT_rich Low_complexity Low_complexity 1 21 0 209 211 0 0 chr4 176296733 176296771 -26031576 + (CATA)n Simple_repeat Simple_repeat 1 38 0 22 35 0 0 chr4 176297064 176297093 -26031254 + AT_rich Low_complexity Low_complexity 1 29 0 23 97 0 0 chr4 176297541 176297613 -26030734 + AT_rich Low_complexity Low_complexity 1 72 0 1612 123 3 167 chr4 176297620 176298009 -26030338 + HSMAR2 DNA Mariner 2 326 -976 2538 118 24 26 chr4 176298013 176298216 -26030131 + HSMAR2 DNA Mariner 888 1090 -212 2072 202 20 78 chr4 176298216 176298804 -26029543 + MLT2B3 LTR ERVL 1 554 0 2538 118 24 26 chr4 176298804 176299016 -26029331 + HSMAR2 DNA Mariner 1090 1302 0 1400 171 64 11 chr4 176299452 176299733 -26028614 + AluJo SINE Alu 11 306 -6 294 286 102 10 chr4 176299764 176299862 -26028485 - MIR SINE MIR -88 174 68 1443 227 56 60 chr4 176300898 176301418 -26026929 - LTR40a LTR ERVL 0 519 2 330 310 41 29 chr4 176301822 176301993 -26026354 - MIR SINE MIR -12 250 78 810 211 0 0 chr4 176302035 176302187 -26026160 - L1MA5 LINE L1 -366 5934 5783 2192 228 55 45 chr4 176303032 176303681 -26024666 + L1MB7 LINE L1 3875 4535 -1611 1361 190 84 11 chr4 176303681 176303955 -26024392 - AluJo SINE Alu -18 294 1 2192 228 55 45 chr4 176303955 176304064 -26024283 + L1MB7 LINE L1 4535 4641 -1505 693 197 121 5 chr4 176304075 176304273 -26024074 + L1MA7 LINE L1 6070 6290 -1 227 282 0 0 chr4 176304324 176304395 -26023952 + L1MB7 LINE L1 4780 4850 -1296 1375 180 32 4 chr4 176304503 176304753 -26023594 + AluJb SINE Alu 30 286 -26 2986 207 96 38 chr4 176304766 176305848 -26022499 + L1MB7 LINE L1 5019 6175 -9 653 329 36 4 chr4 176306124 176306373 -26021974 + MIR SINE MIR 6 262 0 500 310 139 52 chr4 176307116 176307426 -26020921 + MLT1J2 LTR MaLR 110 450 0 1778 207 63 44 chr4 176307671 176308198 -26020149 + LTR55 LTR ERV 1 537 -11 466 319 99 43 chr4 176308400 176308814 -26019533 + MLT1L LTR MaLR 179 615 0 3851 98 30 38 chr4 176309343 176309974 -26018373 + L1PB2 LINE L1 5517 6142 -9 316 245 168 19 chr4 176310191 176310346 -26018001 + MER104 DNA Tc2 2 179 -1 198 103 0 0 chr4 176310372 176310401 -26017946 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 234 378 22 39 chr4 176310746 176310926 -26017421 + MLT1K LTR MaLR 106 282 -306 21 0 0 0 chr4 176312234 176312255 -26016092 + AT_rich Low_complexity Low_complexity 1 21 0 291 382 22 19 chr4 176314129 176314396 -26013951 - L3 LINE CR1 -626 951 684 1535 172 48 0 chr4 176314397 176314665 -26013682 + AluSx SINE Alu 2 282 -30 227 278 61 78 chr4 176314688 176314803 -26013544 - L3 LINE CR1 -882 695 583 784 201 32 104 chr4 176314870 176315178 -26013169 - L1MDa LINE L1 -1406 5134 4849 1032 269 55 67 chr4 176315210 176315805 -26012542 - L1MDa LINE L1 -2499 4041 3454 * 1880 218 25 0 chr4 176315803 176316243 -26012104 - L1P LINE L1 -770 5376 4926 4444 141 18 5 chr4 176316259 176316996 -26011351 + L1PA16 LINE L1 5410 6155 -11 1041 245 64 15 chr4 176317044 176317478 -26010869 - L1MDa LINE L1 -3222 3318 2839 430 223 35 81 chr4 176317485 176317682 -26010665 - L1MDa LINE L1 -4129 2592 2405 * 1004 291 108 56 chr4 176317671 176318488 -26009859 - L1MEc LINE L1 -5541 882 24 2008 92 32 25 chr4 176319659 176319941 -26008406 + AluSp SINE Alu 1 284 -29 1242 240 138 28 chr4 176320659 176321021 -26007326 + MER31A LTR ERV1 58 459 -26 754 160 0 0 chr4 176321282 176321401 -26006946 - AluJb SINE Alu -193 119 1 5899 221 52 33 chr4 176321401 176322605 -26005742 - L1MDa LINE L1 -4170 2370 1125 1838 129 39 4 chr4 176322605 176322715 -26005632 + AluY SINE Alu 3 108 -203 189 0 0 0 chr4 176322715 176322736 -26005611 + (TAA)n Simple_repeat Simple_repeat 1 21 0 1838 129 39 4 chr4 176322736 176322905 -26005442 + AluY SINE Alu 108 292 -19 5899 221 52 33 chr4 176322905 176323377 -26004970 - L1MDa LINE L1 -5415 1125 663 358 120 120 65 chr4 176323839 176323947 -26004400 + MER51D LTR ERV1 500 613 -44 1564 280 69 59 chr4 176324043 176324514 -26003833 - L1MDa LINE L1 -5875 665 185 198 0 0 0 chr4 176324514 176324536 -26003811 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 1564 280 69 59 chr4 176324536 176324704 -26003643 - L1MDa LINE L1 -6355 185 20 2436 72 0 0 chr4 176324704 176325010 -26003337 - AluY SINE Alu -5 306 1 404 302 26 0 chr4 176325642 176325758 -26002589 + MLT1E1 LTR MaLR 1 119 -535 4885 137 73 56 chr4 176325764 176327276 -26001071 - pTR5 LTR ERV1 0 2438 743 715 182 28 0 chr4 176327279 176327422 -26000925 + MLT1E1 LTR MaLR 122 268 -386 840 229 108 0 chr4 176327498 176327712 -26000635 + MLT1E1 LTR MaLR 418 654 0 233 328 0 0 chr4 176327810 176327871 -26000476 + MLT1H LTR MaLR 231 291 -258 291 249 182 67 chr4 176328116 176328281 -26000066 + MIR SINE MIR 35 218 -44 1207 202 101 4 chr4 176328288 176328555 -25999792 + MLT2D LTR ERVL 1 293 -121 204 40 0 0 chr4 176328555 176328580 -25999767 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 262 225 27 90 chr4 176328597 176328708 -25999639 - L1MC4 LINE L1 -1323 6719 6616 282 62 42 42 chr4 176328720 176328768 -25999579 + MLT2B3 LTR ERVL 507 554 0 1257 164 44 143 chr4 176329743 176330128 -25998219 - MER7A DNA MER2_type 0 346 2 306 0 0 0 chr4 176331580 176331614 -25996733 + (TA)n Simple_repeat Simple_repeat 1 34 0 233 60 0 120 chr4 176333311 176333361 -25994986 - MADE1 DNA Mariner -3 77 34 3321 169 39 31 chr4 176333515 176334257 -25994090 - L1MB2 LINE L1 -3 6168 5421 8673 55 109 6 chr4 176334388 176335567 -25992780 + L1P LINE L1 3 1303 -4843 5911 16 0 0 chr4 176335567 176336238 -25992109 + L1PA3 LINE L1 5480 6150 -5 1401 184 64 8 chr4 176336270 176336537 -25991810 + MER72 LTR ERV1 48 329 -393 849 207 23 6 chr4 176336527 176336701 -25991646 + MER72 LTR ERV1 546 722 0 * 2003 143 3 0 chr4 176337533 176337833 -25990514 + AluSx SINE Alu 1 301 -11 362 179 26 0 chr4 176337933 176338011 -25990336 + MER116 DNA Mariner 1 80 0 672 231 121 0 chr4 176338833 176339006 -25989341 + LTR29 LTR ERV1 2 195 -427 336 152 76 15 chr4 176339064 176339130 -25989217 + LTR49 LTR ERV1 522 591 -4 732 177 6 103 chr4 176339638 176339813 -25988534 - MER5A DNA MER1_type -22 167 10 232 325 62 0 chr4 176339811 176339891 -25988456 - L2 LINE L2 -45 3268 3184 * 260 155 121 0 chr4 176339907 176339965 -25988382 + L1MA6 LINE L1 5847 5911 -389 1904 138 41 63 chr4 176339995 176340407 -25987940 + L1MA6 LINE L1 5894 6296 -4 2066 112 3 3 chr4 176340426 176340712 -25987635 + AluSc SINE Alu 1 286 -23 303 127 0 0 chr4 176340713 176340776 -25987571 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1587 147 8 131 chr4 176342830 176343212 -25985135 + MER7A DNA MER2_type 1 333 -13 234 91 0 0 chr4 176344735 176344768 -25983579 + (TA)n Simple_repeat Simple_repeat 1 33 0 207 100 0 0 chr4 176345253 176345283 -25983064 + (TC)n Simple_repeat Simple_repeat 1 30 0 1329 137 0 0 chr4 176395383 176395588 -25932759 + L1PA16 LINE L1 5708 5912 -254 1052 278 35 71 chr4 176395579 176396069 -25932278 - L1MCb LINE L1 -5404 641 170 * 203 103 26 26 chr4 176396075 176396114 -25932233 + (TCTA)n Simple_repeat Simple_repeat 1 39 0 257 345 46 29 chr4 176396552 176396726 -25931621 + L2 LINE L2 3136 3312 -1 24 32 0 0 chr4 176396890 176396921 -25931426 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 176397876 176397899 -25930448 + AT_rich Low_complexity Low_complexity 1 23 0 33 56 0 0 chr4 176398303 176398357 -25929990 + AT_rich Low_complexity Low_complexity 1 54 0 189 328 35 0 chr4 176398584 176398642 -25929705 - L2 LINE L2 -88 3184 3125 259 267 47 35 chr4 176398932 176399018 -25929329 + MLT1F LTR MaLR 83 169 -380 313 285 179 31 chr4 176399063 176399333 -25929014 + MLT1F LTR MaLR 274 517 -25 5675 44 25 0 chr4 176401048 176401754 -25926593 - L1PA6 LINE L1 0 6154 5431 578 335 102 0 chr4 176401839 176402054 -25926293 - MIR SINE MIR -13 249 13 753 212 90 21 chr4 176402063 176402252 -25926095 + MER58A DNA MER1_type 1 202 -22 21 82 0 0 chr4 176402880 176402929 -25925418 + AT_rich Low_complexity Low_complexity 1 49 0 1038 305 151 19 chr4 176404019 176404541 -25923806 - MLT1E LTR MaLR -2 591 1 1045 167 49 0 chr4 176404674 176404878 -25923469 - L1MA4 LINE L1 -6 6294 6081 932 254 117 3 chr4 176404937 176405228 -25923119 - MER5C DNA MER1_type 0 324 1 787 268 6 0 chr4 176405441 176405620 -25922727 - AluJb SINE Alu -4 308 129 1147 190 27 23 chr4 176405763 176406026 -25922321 + L1MC1 LINE L1 5807 6070 -263 35 54 0 0 chr4 176406241 176406297 -25922050 + AT_rich Low_complexity Low_complexity 1 56 0 32 81 0 0 chr4 176407472 176407546 -25920801 + AT_rich Low_complexity Low_complexity 1 74 0 1696 181 21 49 chr4 176407697 176408083 -25920264 + THE1C LTR MaLR 1 375 0 506 289 258 45 chr4 176409252 176409539 -25918808 + L2 LINE L2 1747 1972 -1342 1409 227 34 61 chr4 176409539 176409979 -25918368 + MSTC LTR MaLR 1 428 0 506 289 258 45 chr4 176409979 176410079 -25918268 + L2 LINE L2 1972 2049 -1265 4170 105 18 18 chr4 176410079 176410754 -25917593 - L1MA3 LINE L1 -2 6303 5629 506 289 258 45 chr4 176410754 176411145 -25917202 + L2 LINE L2 2049 2692 -622 192 318 15 15 chr4 176411406 176411472 -25916875 + L2 LINE L2 3241 3306 -7 50 65 0 0 chr4 176411586 176411678 -25916669 + AT_rich Low_complexity Low_complexity 1 92 0 279 173 0 0 chr4 176413383 176413435 -25914912 + GA-rich Low_complexity Low_complexity 3 54 0 233 318 118 41 chr4 176413864 176414059 -25914288 + L2 LINE L2 1466 1675 -1639 677 323 89 49 chr4 176414137 176415032 -25913315 + L2 LINE L2 1821 3272 0 4002 242 46 93 chr4 176415118 176416960 -25911387 - MER52A LTR ERV1 0 1755 1 1100 110 7 0 chr4 176417124 176417278 -25911069 + AluY SINE Alu 140 294 -17 27 29 0 0 chr4 176417893 176417927 -25910420 + AT_rich Low_complexity Low_complexity 1 34 0 720 235 0 6 chr4 176417932 176418102 -25910245 - L1MA5 LINE L1 -296 6004 5836 * 974 150 64 0 chr4 176418101 176418288 -25910059 + L1MA5 LINE L1 6013 6211 -89 25 0 0 0 chr4 176418305 176418330 -25910017 + AT_rich Low_complexity Low_complexity 1 25 0 203 350 0 0 chr4 176418453 176418513 -25909834 + L2 LINE L2 3246 3305 -8 21 0 0 0 chr4 176418628 176418649 -25909698 + AT_rich Low_complexity Low_complexity 1 21 0 682 328 103 34 chr4 176421502 176422192 -25906155 + L2 LINE L2 2561 3307 -6 185 391 0 0 chr4 176422238 176422307 -25906040 - L2 LINE L2 -1375 1939 1871 225 204 0 0 chr4 176422796 176422840 -25905507 + (TAA)n Simple_repeat Simple_repeat 1 44 0 234 250 0 62 chr4 176423168 176423232 -25905115 + MIR SINE MIR 50 109 -99 296 313 182 26 chr4 176423259 176423461 -25904886 + MIR SINE MIR 16 247 -15 241 286 0 57 chr4 176423788 176423858 -25904489 - MIR SINE MIR -99 109 44 22 0 0 0 chr4 176423971 176423993 -25904354 + AT_rich Low_complexity Low_complexity 1 22 0 445 342 122 0 chr4 176424356 176424578 -25903769 - MLT1J2 LTR MaLR -2 448 200 548 38 0 25 chr4 176424927 176425006 -25903341 + L1PA2 LINE L1 6079 6155 0 23 78 0 0 chr4 176425410 176425461 -25902886 + AT_rich Low_complexity Low_complexity 1 51 0 355 61 0 0 chr4 176425934 176425983 -25902364 + (TTTA)n Simple_repeat Simple_repeat 4 116 0 1803 144 3 7 chr4 176425983 176426269 -25902078 - AluSx SINE Alu -1 335 3 452 299 88 23 chr4 176426348 176426732 -25901615 + L1ME4a LINE L1 5497 5905 -216 183 139 0 0 chr4 176426756 176426792 -25901555 + (TG)n Simple_repeat Simple_repeat 2 37 0 1553 164 50 14 chr4 176427629 176427910 -25900437 + AluSx SINE Alu 7 297 -15 26 0 0 0 chr4 176428024 176428050 -25900297 + AT_rich Low_complexity Low_complexity 1 26 0 771 118 0 0 chr4 176428955 176429065 -25899282 - AluSp/q SINE Alu -6 307 198 3397 169 17 49 chr4 176430252 176430966 -25897381 + L1MB3 LINE L1 5486 6176 -7 289 366 0 10 chr4 176431053 176431154 -25897193 + MER5B DNA MER1_type 78 177 -1 2039 110 7 0 chr4 176433262 176433579 -25894768 + AluSx SINE Alu 1 319 0 182 61 0 61 chr4 176434746 176434779 -25893568 + (TATG)n Simple_repeat Simple_repeat 2 32 0 22130 51 7 2 chr4 176435169 176437952 -25890395 + L1P LINE L1 1 2796 -3350 9096 38 11 0 chr4 176437948 176439087 -25889260 + L1P LINE L1 4081 5232 -914 * 1248 158 23 34 chr4 176439191 176439457 -25888890 + L1MC1 LINE L1 6065 6327 -6 22 35 0 0 chr4 176439827 176439856 -25888491 + AT_rich Low_complexity Low_complexity 1 29 0 186 43 0 0 chr4 176440242 176440265 -25888082 + (CA)n Simple_repeat Simple_repeat 2 24 0 246 226 19 0 chr4 176440815 176440868 -25887479 + GA-rich Low_complexity Low_complexity 3 56 0 265 219 101 67 chr4 176440888 176441007 -25887340 - L2 LINE L2 -5 3308 3186 549 0 0 0 chr4 176441285 176441346 -25887001 + (TG)n Simple_repeat Simple_repeat 2 62 0 180 0 0 0 chr4 176441606 176441626 -25886721 + (TAA)n Simple_repeat Simple_repeat 2 21 0 233 276 0 0 chr4 176441626 176441684 -25886663 - MIR SINE MIR -81 181 124 26 0 0 0 chr4 176441711 176441737 -25886610 + AT_rich Low_complexity Low_complexity 1 26 0 1202 94 0 0 chr4 176443847 176444006 -25884341 - AluSq SINE Alu -3 310 152 444 232 136 8 chr4 176445370 176445495 -25882852 + MER58A DNA MER1_type 10 150 0 452 177 12 12 chr4 176445717 176445883 -25882464 + GA-rich Low_complexity Low_complexity 1 166 0 1070 273 52 16 chr4 176445883 176446399 -25881948 + MER90 LTR ERV1 2 613 -1 22 35 0 0 chr4 176447133 176447162 -25881185 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 176447813 176447834 -25880513 + AT_rich Low_complexity Low_complexity 1 21 0 231 262 74 101 chr4 176447989 176448138 -25880209 + L3 LINE CR1 914 1058 -519 257 254 0 42 chr4 176448170 176448241 -25880106 + L3 LINE CR1 1170 1237 -340 23 33 0 0 chr4 176449099 176449129 -25879218 + AT_rich Low_complexity Low_complexity 1 30 0 335 321 31 49 chr4 176449447 176449609 -25878738 + MIR SINE MIR 29 187 -75 676 298 29 33 chr4 176450091 176450333 -25878014 - MIR SINE MIR -21 241 1 521 133 78 11 chr4 176451058 176451148 -25877199 - MER105 DNA DNA -59 145 50 563 270 46 13 chr4 176451167 176451319 -25877028 - MER5A DNA MER1_type -32 157 1 2125 123 3 0 chr4 176451438 176451738 -25876609 - AluSc SINE Alu -8 301 1 189 195 0 0 chr4 176452115 176452156 -25876191 + (TA)n Simple_repeat Simple_repeat 1 41 0 302 279 19 10 chr4 176452611 176452715 -25875632 - L1ME1 LINE L1 -4 6162 6058 226 114 0 0 chr4 176452715 176452750 -25875597 - MER3 DNA MER1_type -160 49 15 2575 227 45 24 chr4 176452751 176453433 -25874914 - L1ME1 LINE L1 -145 6021 5325 2297 94 3 0 chr4 176453480 176453778 -25874569 - AluSp SINE Alu -14 299 1 255 265 154 17 chr4 176454323 176454440 -25873907 + MIR SINE MIR 19 151 -111 1983 92 4 0 chr4 176454969 176455240 -25873107 + L1P3 LINE L1 3 274 -6187 4364 58 2 5 chr4 176456285 176456838 -25871509 - L1PA7 LINE L1 -17 6137 5587 21 36 0 0 chr4 176457139 176457167 -25871180 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 176457225 176457251 -25871096 + AT_rich Low_complexity Low_complexity 1 26 0 934 289 10 29 chr4 176457319 176457728 -25870619 + L1M4 LINE L1 3712 4112 -2034 1187 225 39 61 chr4 176457782 176458234 -25870113 - MLT2B1 LTR ERVL 0 464 1 524 275 83 34 chr4 176458350 176458761 -25869586 + L1M4 LINE L1 3043 3473 -2673 22 0 0 0 chr4 176458774 176458796 -25869551 + AT_rich Low_complexity Low_complexity 1 22 0 901 273 37 13 chr4 176458820 176459201 -25869146 + L1M4 LINE L1 4218 4607 -1539 2409 280 16 21 chr4 176459238 176460367 -25867980 - L1MCa LINE L1 -3013 3551 2364 412 287 35 55 chr4 176460334 176460518 -25867829 - L1MCa LINE L1 -5241 804 623 * 672 129 0 72 chr4 176460518 176460657 -25867690 - L1PA16 LINE L1 -1 6165 6037 412 287 35 55 chr4 176460657 176460674 -25867673 - L1MCa LINE L1 -5422 623 607 * 447 165 35 0 chr4 176460659 176460744 -25867603 + L1P4 LINE L1 5628 5715 -451 195 129 0 0 chr4 176460853 176460884 -25867463 + (CA)n Simple_repeat Simple_repeat 2 32 0 657 268 83 18 chr4 176460990 176461218 -25867129 + MLT1C LTR MaLR 1 243 -224 507 315 84 25 chr4 176462587 176462825 -25865522 - MIR SINE MIR -3 259 8 548 326 38 25 chr4 176462958 176463197 -25865150 - MIR SINE MIR 0 262 21 416 276 146 43 chr4 176463801 176463986 -25864361 + MIR SINE MIR 1 204 -58 192 152 0 0 chr4 176463986 176464019 -25864328 + (TATG)n Simple_repeat Simple_repeat 2 34 0 284 48 24 0 chr4 176464311 176464353 -25863994 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 225 280 192 40 chr4 176464404 176464529 -25863818 + MIR SINE MIR 111 254 -8 2196 108 15 3 chr4 176465741 176466087 -25862260 + L1PA10 LINE L1 5820 6169 0 191 236 151 66 chr4 176466340 176466446 -25861901 - L2 LINE L2 -37 3276 3162 442 286 0 24 chr4 176467219 176467366 -25860981 + MIR SINE MIR 6 150 -58 1827 206 24 38 chr4 176469857 176470353 -25857994 - L1MB8 LINE L1 0 6178 5690 1842 148 0 0 chr4 176470694 176471011 -25857336 - AluSx SINE Alu 0 317 1 2391 68 0 13 chr4 176473950 176474259 -25854088 - AluY SINE Alu 0 311 7 310 346 124 22 chr4 176474826 176475011 -25853336 - MIR SINE MIR -13 249 46 1222 231 75 0 chr4 176475957 176476277 -25852070 + MER2 DNA MER2_type 1 344 0 2146 161 13 5 chr4 176477371 176477757 -25850590 + L1PA16 LINE L1 5773 6161 -5 22 0 0 0 chr4 176477768 176477790 -25850557 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 176477888 176477913 -25850434 + AT_rich Low_complexity Low_complexity 1 25 0 24 67 0 0 chr4 176478595 176478640 -25849707 + AT_rich Low_complexity Low_complexity 1 45 0 1909 159 7 3 chr4 176478991 176479292 -25849055 + AluJb SINE Alu 1 302 -10 21 36 0 0 chr4 176480674 176480702 -25847645 + AT_rich Low_complexity Low_complexity 1 28 0 40 59 0 0 chr4 176482251 176482319 -25846028 + AT_rich Low_complexity Low_complexity 1 68 0 1430 212 0 31 chr4 176483118 176483406 -25844941 + AluJo SINE Alu 3 281 -31 264 100 0 0 chr4 176483495 176483535 -25844812 + (CA)n Simple_repeat Simple_repeat 2 41 0 238 277 36 0 chr4 176483607 176483690 -25844657 + L1ME3 LINE L1 6076 6161 -1 35 41 0 0 chr4 176483708 176483757 -25844590 + AT_rich Low_complexity Low_complexity 1 49 0 1887 117 28 14 chr4 176485295 176485586 -25842761 - AluSx SINE Alu -9 303 9 252 122 0 0 chr4 176486470 176486511 -25841836 + (TG)n Simple_repeat Simple_repeat 2 42 0 272 216 35 17 chr4 176488155 176488271 -25840076 + (TA)n Simple_repeat Simple_repeat 2 119 0 535 331 88 20 chr4 176488455 176488760 -25839587 + MLT1J1 LTR MaLR 1 326 -120 1041 259 82 38 chr4 176489126 176489493 -25838854 + MSTD LTR MaLR 1 383 -13 258 379 0 11 chr4 176490746 176490841 -25837506 + HERV16 LTR ERVL 2810 2903 -2093 316 331 46 20 chr4 176490846 176490997 -25837350 + HERV16 LTR ERVL 3044 3198 -2566 398 327 142 9 chr4 176491113 176491324 -25837023 + HERV16 LTR ERVL 3355 3593 -2061 413 392 35 0 chr4 176491391 176491677 -25836670 + HERV16 LTR ERVL 3739 4034 -1730 376 238 76 0 chr4 176491867 176491972 -25836375 + HERV16 LTR ERVL 4165 4277 -1208 531 290 118 16 chr4 176492533 176492847 -25835500 + LTR33 LTR ERVL 159 504 -17 1349 98 5 10 chr4 176493249 176493452 -25834895 + L1PB1 LINE L1 5950 6151 0 23 54 0 0 chr4 176493478 176493515 -25834832 + AT_rich Low_complexity Low_complexity 1 37 0 1730 140 10 127 chr4 176494363 176494756 -25833591 - MER7A DNA MER2_type -1 345 1 309 319 52 44 chr4 176495627 176495762 -25832585 + L2 LINE L2 2946 3081 -191 2058 148 82 15 chr4 176496117 176496509 -25831838 - Tigger2a DNA MER2_type -16 418 1 931 196 93 49 chr4 176496738 176496963 -25831384 + AluJo SINE Alu 41 275 -37 288 0 0 0 chr4 176496968 176497000 -25831347 + (CAA)n Simple_repeat Simple_repeat 2 33 0 30 0 0 0 chr4 176497032 176497062 -25831285 + AT_rich Low_complexity Low_complexity 1 30 0 504 235 125 0 chr4 176497233 176497369 -25830978 - MLT1J LTR MaLR -356 155 3 2154 82 36 0 chr4 176497507 176497812 -25830535 - L1PA11 LINE L1 -3 6171 5856 294 337 88 12 chr4 176498031 176498360 -25829987 - HAL1 LINE L1 -794 1713 1360 453 66 0 0 chr4 176498677 176498738 -25829609 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 36 23 0 0 chr4 176501848 176501891 -25826456 + AT_rich Low_complexity Low_complexity 1 43 0 293 0 0 26 chr4 176501978 176502016 -25826331 + (TTA)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr4 176505380 176505401 -25822946 + AT_rich Low_complexity Low_complexity 1 21 0 2130 107 3 3 chr4 176505792 176506100 -25822247 + AluSc SINE Alu 1 308 -1 228 122 0 0 chr4 176506480 176506521 -25821826 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 284 268 14 0 chr4 176507113 176507184 -25821163 - MLT1K LTR MaLR -379 209 138 207 0 0 0 chr4 176507253 176507276 -25821071 + (A)n Simple_repeat Simple_repeat 1 23 0 31 0 0 0 chr4 176507484 176507515 -25820832 + AT_rich Low_complexity Low_complexity 1 31 0 1351 257 48 24 chr4 176507522 176507978 -25820369 - MLT1C LTR MaLR 0 467 1 195 129 0 0 chr4 176508084 176508115 -25820232 + (TG)n Simple_repeat Simple_repeat 2 32 0 198 395 0 12 chr4 176508578 176508659 -25819688 - MIR SINE MIR -154 108 29 195 241 30 181 chr4 176508864 176508997 -25819350 + MIR SINE MIR 3 115 -147 192 349 23 68 chr4 176509387 176509519 -25818828 - MIR3 SINE MIR -6 202 77 298 323 25 32 chr4 176509650 176509808 -25818539 + MIR SINE MIR 1 157 -105 1178 196 26 15 chr4 176510224 176510495 -25817852 + L1MA6 LINE L1 6027 6300 0 338 333 0 0 chr4 176510713 176510793 -25817554 + MER2 DNA MER2_type 1 80 -265 236 222 0 0 chr4 176510793 176510838 -25817509 - MER2 DNA MER2_type -1 344 300 317 219 0 0 chr4 176510848 176510912 -25817435 + MER2 DNA MER2_type 282 345 0 569 195 73 18 chr4 176511592 176511756 -25816591 - L1MC1 LINE L1 -353 5980 5808 * 6404 237 58 17 chr4 176511740 176514594 -25813753 - L1MCa LINE L1 -1664 4762 1790 25 65 0 0 chr4 176515022 176515068 -25813279 + AT_rich Low_complexity Low_complexity 1 46 0 386 79 16 0 chr4 176515730 176515793 -25812554 + (TC)n Simple_repeat Simple_repeat 1 64 0 180 167 0 0 chr4 176515792 176515840 -25812507 + (CA)n Simple_repeat Simple_repeat 1 48 0 * 1357 304 47 71 chr4 176516296 176517046 -25811301 + L2 LINE L2 233 964 -2350 1866 102 81 28 chr4 176517048 176517332 -25811015 - AluSc SINE Alu -10 299 1 17874 165 72 28 chr4 176517637 176523235 -25805112 + L1MA3 LINE L1 12 5865 -1700 6671 109 13 5 chr4 176523251 176524267 -25804080 + L1MA3 LINE L1 6673 7696 -28 23 0 0 0 chr4 176524267 176524290 -25804057 + AT_rich Low_complexity Low_complexity 1 23 0 616 122 21 23 chr4 176524290 176524596 -25803751 + (TA)n Simple_repeat Simple_repeat 1 305 0 85 11 0 0 chr4 176524596 176524688 -25803659 + AT_rich Low_complexity Low_complexity 1 92 0 653 110 35 6 chr4 176524688 176524861 -25803486 + (TA)n Simple_repeat Simple_repeat 2 179 0 244 111 37 0 chr4 176524877 176524931 -25803416 + (TA)n Simple_repeat Simple_repeat 1 56 0 652 297 72 72 chr4 176525202 176525703 -25802644 + L2 LINE L2 959 1459 -1855 26 30 0 0 chr4 176526369 176526402 -25801945 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr4 176526830 176526863 -25801484 + AT_rich Low_complexity Low_complexity 1 33 0 1942 157 0 7 chr4 176527097 176527396 -25800951 - AluJb SINE Alu -15 297 1 24 32 0 0 chr4 176528179 176528210 -25800137 + AT_rich Low_complexity Low_complexity 1 31 0 347 306 109 55 chr4 176528865 176529358 -25798989 - LTR33 LTR ERVL -1 520 1 22 0 0 0 chr4 176530312 176530334 -25798013 + AT_rich Low_complexity Low_complexity 1 22 0 683 314 14 5 chr4 176530455 176530662 -25797685 + MER58A DNA MER1_type 1 209 -15 22 35 0 0 chr4 176530746 176530775 -25797572 + AT_rich Low_complexity Low_complexity 1 29 0 331 278 69 101 chr4 176530804 176531400 -25796947 + L1MEc LINE L1 1233 1769 -4446 318 255 0 94 chr4 176531463 176531612 -25796735 + L1ME LINE L1 5603 5737 -433 296 244 8 0 chr4 176531718 176531845 -25796502 + (TA)n Simple_repeat Simple_repeat 1 128 0 325 214 41 82 chr4 176531848 176531946 -25796401 - L1MC4 LINE L1 -1337 6705 6612 338 197 0 33 chr4 176531946 176532068 -25796279 + (TA)n Simple_repeat Simple_repeat 1 118 0 228 143 54 18 chr4 176532071 176532127 -25796220 + L1MC3 LINE L1 6589 6646 -1139 552 205 0 0 chr4 176532127 176532278 -25796069 + (TA)n Simple_repeat Simple_repeat 2 152 0 263 277 25 75 chr4 176532410 176532425 -25795922 + L1MCc LINE L1 247 261 -6162 894 133 6 18 chr4 176532425 176532591 -25795756 + L1MA4 LINE L1 6137 6300 0 263 277 25 75 chr4 176532591 176532853 -25795494 + L1MCc LINE L1 261 510 -5913 273 307 102 0 chr4 176533251 176533378 -25794969 + L1MCc LINE L1 1178 1317 -5106 207 100 0 0 chr4 176535253 176535283 -25793064 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 869 302 16 4 chr4 176535502 176535747 -25792600 + MIR SINE MIR 14 261 -1 37 0 0 0 chr4 176536507 176536544 -25791803 + AT_rich Low_complexity Low_complexity 1 37 0 312 102 0 0 chr4 176537377 176537426 -25790921 + (TCCC)n Simple_repeat Simple_repeat 3 51 0 * 378 98 37 24 chr4 176537424 176537506 -25790841 + T-rich Low_complexity Low_complexity 5 87 0 1115 165 103 37 chr4 176537525 176537768 -25790579 - AluJb SINE Alu -14 298 40 23 0 0 0 chr4 176538310 176538333 -25790014 + AT_rich Low_complexity Low_complexity 1 23 0 28 71 0 0 chr4 176538582 176538638 -25789709 + AT_rich Low_complexity Low_complexity 1 56 0 2157 112 0 10 chr4 176539089 176539402 -25788945 - AluSg SINE Alu 0 310 1 1633 298 123 35 chr4 176539428 176540548 -25787799 + L2 LINE L2 2005 3222 -91 422 0 38 0 chr4 176540548 176540601 -25787746 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1633 298 123 35 chr4 176540601 176540694 -25787653 + L2 LINE L2 3222 3305 -8 816 273 75 70 chr4 176540718 176540792 -25787555 - MLT1J LTR MaLR 0 511 439 2306 73 0 3 chr4 176540792 176541095 -25787252 + AluY SINE Alu 1 302 -9 816 273 75 70 chr4 176541095 176541460 -25786887 - MLT1J LTR MaLR -72 439 70 2004 123 10 3 chr4 176541625 176541925 -25786422 + AluSq SINE Alu 1 302 -11 2256 98 0 0 chr4 176542784 176543079 -25785268 - AluSx SINE Alu -11 301 7 385 301 89 14 chr4 176543573 176543786 -25784561 + L2 LINE L2 1817 2045 -1269 1241 67 22 17 chr4 176543914 176544093 -25784254 + MER30B DNA MER1_type 6 185 -5 680 280 0 36 chr4 176544458 176544651 -25783696 + MER5A DNA MER1_type 2 187 -2 22 0 0 0 chr4 176545117 176545139 -25783208 + AT_rich Low_complexity Low_complexity 1 22 0 724 165 0 0 chr4 176545382 176545497 -25782850 - AluJo SINE Alu -22 290 176 722 190 0 0 chr4 176545499 176545620 -25782727 - AluJo SINE Alu -189 123 3 36 62 0 0 chr4 176545627 176545691 -25782656 + AT_rich Low_complexity Low_complexity 1 64 0 26 30 0 0 chr4 176546575 176546608 -25781739 + AT_rich Low_complexity Low_complexity 1 33 0 1997 111 3 52 chr4 176546664 176546971 -25781376 + AluSx SINE Alu 3 294 -18 870 281 96 39 chr4 176547921 176548358 -25779989 - MLT1C LTR MaLR 0 467 6 1666 212 127 0 chr4 176548405 176548853 -25779494 + MLT1D LTR MaLR 1 505 0 2104 133 0 13 chr4 176549373 176549688 -25778659 - AluSx SINE Alu 0 312 2 243 198 49 0 chr4 176550416 176550497 -25777850 + (TA)n Simple_repeat Simple_repeat 1 85 0 342 0 0 0 chr4 176551037 176551075 -25777272 + (TG)n Simple_repeat Simple_repeat 2 39 0 735 208 67 6 chr4 176551413 176551591 -25776756 + MER5A DNA MER1_type 1 189 0 23 33 0 0 chr4 176552044 176552074 -25776273 + AT_rich Low_complexity Low_complexity 1 30 0 224 356 68 8 chr4 176552176 176552294 -25776053 + L2 LINE L2 3187 3311 -2 * 237 232 18 18 chr4 176552291 176552347 -25776000 + MIR SINE MIR 87 142 -66 23 54 0 0 chr4 176552795 176552832 -25775515 + AT_rich Low_complexity Low_complexity 1 37 0 226 224 0 0 chr4 176553012 176553070 -25775277 - L1ME4a LINE L1 -4 6117 6060 21 71 0 0 chr4 176553342 176553384 -25774963 + AT_rich Low_complexity Low_complexity 1 42 0 399 345 116 10 chr4 176555162 176555577 -25772770 + MLT1L LTR MaLR 143 601 -14 2267 194 122 17 chr4 176555854 176556396 -25771951 + LTR48 LTR ERV1 189 787 0 1410 251 113 49 chr4 176557009 176557667 -25770680 + HAL1 LINE L1 1138 1837 -670 519 294 86 48 chr4 176558014 176558517 -25769830 + HAL1 LINE L1 1978 2499 -8 23 33 0 0 chr4 176558755 176558785 -25769562 + AT_rich Low_complexity Low_complexity 1 30 0 188 364 0 0 chr4 176559814 176559880 -25768467 - L2 LINE L2 0 3272 3207 1426 283 142 48 chr4 176560099 176560981 -25767366 - L2 LINE L2 -354 2960 1996 12253 94 3 2 chr4 176560987 176562736 -25765611 + L1PA7 LINE L1 1812 3561 -2585 4301 81 3 2 chr4 176562737 176563338 -25765009 + L1PA7 LINE L1 5563 6164 0 291 320 88 0 chr4 176563338 176563463 -25764884 - L2 LINE L2 -1333 1981 1846 904 179 31 58 chr4 176563484 176563708 -25764639 + MER20 DNA MER1_type 1 218 -1 195 344 125 0 chr4 176564559 176564655 -25763692 - L2 LINE L2 0 3313 3206 246 149 0 0 chr4 176565179 176565226 -25763121 + LTR66 LTR ERVL 392 438 -172 357 229 147 0 chr4 176565227 176565336 -25763011 + MIR SINE MIR 19 143 -119 628 308 12 0 chr4 176566427 176566599 -25761748 + MER5B DNA MER1_type 4 177 -1 2316 62 13 3 chr4 176566783 176567087 -25761260 - AluY SINE Alu -4 307 1 588 237 59 31 chr4 176568297 176568519 -25759828 - MIR SINE MIR 0 262 41 788 219 0 37 chr4 176568745 176568932 -25759415 - MER3 DNA MER1_type -28 181 2 533 206 34 20 chr4 176569340 176569486 -25758861 + Charlie4 DNA MER1_type 1767 1914 -47 249 159 0 0 chr4 176569501 176569545 -25758802 + (CA)n Simple_repeat Simple_repeat 1 44 0 1867 139 10 3 chr4 176570437 176570725 -25757622 - AluSx SINE Alu -21 291 2 702 177 82 129 chr4 176571081 176571141 -25757206 - MER33 DNA MER1_type -2261 324 263 1072 103 6 12 chr4 176571141 176571306 -25757041 + L1PA8 LINE L1 6005 6168 -4 702 177 82 129 chr4 176571306 176571562 -25756785 - MER33 DNA MER1_type -2322 263 23 21 36 0 0 chr4 176572752 176572780 -25755567 + AT_rich Low_complexity Low_complexity 1 28 0 183 42 0 0 chr4 176573062 176573086 -25755261 + (CA)n Simple_repeat Simple_repeat 2 25 0 24 32 0 0 chr4 176573273 176573304 -25755043 + AT_rich Low_complexity Low_complexity 1 31 0 25 65 0 0 chr4 176573628 176573674 -25754673 + AT_rich Low_complexity Low_complexity 1 46 0 211 333 121 0 chr4 176574416 176574515 -25753832 + MIR SINE MIR 81 191 -71 307 222 170 41 chr4 176574586 176574757 -25753590 + MER34 LTR ERV1 1 193 -349 15071 34 1 0 chr4 176574762 176577360 -25750987 + L1PA3 LINE L1 3556 6152 -3 853 83 30 0 chr4 176577369 176577501 -25750846 + L1MA3 LINE L1 5769 5904 -401 390 310 168 41 chr4 176577945 176578142 -25750205 + MIR SINE MIR 3 224 -38 32 0 0 0 chr4 176579866 176579898 -25748449 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr4 176580525 176580556 -25747791 + AT_rich Low_complexity Low_complexity 1 31 0 2468 177 50 2 chr4 176580729 176581209 -25747138 - L1PB4 LINE L1 -2 6154 5652 23 33 0 0 chr4 176581302 176581332 -25747015 + AT_rich Low_complexity Low_complexity 1 30 0 355 322 51 23 chr4 176581860 176582074 -25746273 + MIR SINE MIR 26 245 -17 207 0 0 0 chr4 176582236 176582259 -25746088 + (A)n Simple_repeat Simple_repeat 1 23 0 22 35 0 0 chr4 176582577 176582606 -25745741 + AT_rich Low_complexity Low_complexity 1 29 0 620 256 24 66 chr4 176583415 176583626 -25744721 - MER20 DNA MER1_type 0 219 18 332 308 68 44 chr4 176583727 176583977 -25744370 - L1ME4a LINE L1 -191 5930 5675 4187 37 0 0 chr4 176584532 176585042 -25743305 + L1PA4 LINE L1 5645 6154 -1 808 271 60 23 chr4 176585046 176585345 -25743002 + MER39 LTR ERV1 393 702 -5 208 254 18 0 chr4 176585347 176585402 -25742945 - MIR SINE MIR -39 223 168 361 225 75 7 chr4 176585411 176585585 -25742762 - MER3 DNA MER1_type 0 209 1 23 54 0 0 chr4 176585948 176585985 -25742362 + AT_rich Low_complexity Low_complexity 1 37 0 22 88 0 0 chr4 176586040 176586097 -25742250 + AT_rich Low_complexity Low_complexity 1 57 0 2709 121 36 7 chr4 176586287 176586732 -25741615 - L1MA3 LINE L1 0 6305 5848 5000 87 4 0 chr4 176587415 176588108 -25740239 - L1PA8 LINE L1 -1 6171 5476 2447 71 17 0 chr4 176588108 176588542 -25739805 + L1PA8 LINE L1 5049 5487 -667 2290 134 20 3 chr4 176590831 176591189 -25737158 + THE1B LTR MaLR 1 364 0 8939 118 65 37 chr4 176591189 176592726 -25735621 + THE1B-int LTR MaLR 1 1580 0 2208 139 28 0 chr4 176592729 176593081 -25735266 + THE1B LTR MaLR 3 364 0 698 289 78 5 chr4 176593442 176593660 -25734687 - MIR SINE MIR -1 261 28 201 268 0 0 chr4 176594830 176594886 -25733461 + A-rich Low_complexity Low_complexity 1 56 0 269 194 0 28 chr4 176595704 176595776 -25732571 + (TATATG)n Simple_repeat Simple_repeat 2 71 0 274 339 97 0 chr4 176596629 176596753 -25731594 - L2 LINE L2 -1 3271 3136 25 0 0 0 chr4 176597238 176597263 -25731084 + AT_rich Low_complexity Low_complexity 1 25 0 189 175 0 0 chr4 176597802 176597842 -25730505 + (CA)n Simple_repeat Simple_repeat 1 40 0 1630 195 27 69 chr4 176598435 176598840 -25729507 + MLT1B LTR MaLR 3 390 0 2034 174 134 7 chr4 176598877 176599325 -25729022 - MLT1D LTR MaLR 0 505 1 309 266 0 55 chr4 176600277 176600386 -25727961 - MIR SINE MIR -21 241 139 1864 254 106 13 chr4 176600389 176600945 -25727402 - MER90 LTR ERV1 -5 609 2 429 307 47 8 chr4 176600961 176601088 -25727259 - MIR SINE MIR -130 132 1 384 289 89 89 chr4 176601152 176601467 -25726880 + Charlie2 DNA MER1_type 44 358 -2424 317 267 147 39 chr4 176601542 176602051 -25726296 + Charlie2 DNA MER1_type 2299 2862 0 21 82 0 0 chr4 176603884 176603933 -25724414 + AT_rich Low_complexity Low_complexity 1 49 0 1350 299 178 14 chr4 176604019 176604960 -25723387 + L2 LINE L2 2184 3292 -21 1938 135 17 7 chr4 176605532 176605821 -25722526 - AluSg SINE Alu -15 295 4 338 228 22 61 chr4 176606112 176606187 -25722160 + MLT1F LTR MaLR 441 450 -92 267 31 0 0 chr4 176606187 176606219 -25722128 + (CAGCC)n Simple_repeat Simple_repeat 1 32 0 338 228 22 61 chr4 176606219 176606309 -25722038 + MLT1F LTR MaLR 450 542 0 450 290 0 28 chr4 176607441 176607586 -25720761 - MIR SINE MIR -10 252 112 21 0 0 0 chr4 176609148 176609169 -25719178 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 176609242 176609270 -25719077 + AT_rich Low_complexity Low_complexity 1 28 0 2307 96 6 3 chr4 176609334 176609646 -25718701 + AluSq SINE Alu 1 313 0 2177 109 0 10 chr4 176609683 176609987 -25718360 + AluSx SINE Alu 1 301 -11 23 68 0 0 chr4 176610032 176610076 -25718271 + AT_rich Low_complexity Low_complexity 1 44 0 1035 298 61 23 chr4 176611034 176611511 -25716836 + L1ME LINE L1 1029 1523 -4900 1278 256 75 61 chr4 176611548 176612313 -25716034 + L1ME LINE L1 3889 4663 -2278 349 193 9 114 chr4 176612315 176612429 -25715918 + L1ME LINE L1 6359 6449 -512 8170 194 72 60 chr4 176612466 176614238 -25714109 - L1MA9 LINE L1 0 6200 4451 669 145 48 0 chr4 176614238 176614362 -25713985 - MER51A LTR ERV1 -35 599 470 8170 194 72 60 chr4 176614362 176616104 -25712243 - L1MA9 LINE L1 -1749 4451 2515 586 265 87 71 chr4 176616097 176616616 -25711731 - L1M4c LINE L1 -3986 2048 1523 * 2196 274 26 55 chr4 176616616 176618130 -25710217 - L1M4c LINE L1 -4748 1288 306 1595 286 108 12 chr4 176618286 176618955 -25709392 - L1MA9 LINE L1 -5221 734 2 815 206 17 17 chr4 176619308 176619488 -25708859 - MLT1E LTR MaLR 0 593 414 206 293 40 0 chr4 176619881 176619956 -25708391 + C-rich Low_complexity Low_complexity 4 81 0 333 0 0 0 chr4 176620414 176620451 -25707896 + (TG)n Simple_repeat Simple_repeat 2 38 0 189 343 0 0 chr4 176623235 176623308 -25705039 - MIR SINE MIR -13 249 177 24 0 0 0 chr4 176624657 176624681 -25703666 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr4 176624714 176624752 -25703595 + AT_rich Low_complexity Low_complexity 1 38 0 670 263 48 16 chr4 176626729 176627045 -25701302 - L1MDa LINE L1 -2647 3893 3568 416 106 0 118 chr4 176627051 176627136 -25701211 + MADE1 DNA Mariner 6 80 0 1299 236 35 2 chr4 176627140 176627563 -25700784 - L1MDa LINE L1 -2976 3564 3128 2486 214 126 39 chr4 176627664 176628516 -25699831 - L1MDa LINE L1 -4322 2218 1259 2387 56 7 7 chr4 176628516 176628819 -25699528 - AluY SINE Alu -8 303 1 2486 214 126 39 chr4 176628819 176629002 -25699345 - L1MDa LINE L1 -5281 1259 1093 467 131 55 4 chr4 176629296 176629534 -25698813 + (TA)n Simple_repeat Simple_repeat 1 250 0 419 201 23 0 chr4 176629558 176629732 -25698615 + (TA)n Simple_repeat Simple_repeat 1 178 0 252 217 283 46 chr4 176629855 176630007 -25698340 + MIR SINE MIR 14 201 -61 742 197 0 0 chr4 176630019 176630141 -25698206 + FLAM_C SINE Alu 2 123 -10 22 0 0 0 chr4 176630247 176630269 -25698078 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr4 176630427 176630459 -25697888 + AT_rich Low_complexity Low_complexity 1 32 0 1981 128 0 24 chr4 176631013 176631311 -25697036 - AluSc SINE Alu -14 295 5 22 35 0 0 chr4 176631861 176631890 -25696457 + AT_rich Low_complexity Low_complexity 1 29 0 530 216 0 10 chr4 176632956 176633058 -25695289 + MLT1J LTR MaLR 99 199 -312 30 27 0 0 chr4 176633651 176633688 -25694659 + AT_rich Low_complexity Low_complexity 1 37 0 222 336 20 68 chr4 176633805 176633951 -25694396 - L2 LINE L2 -6 3266 3128 281 230 11 35 chr4 176634570 176634657 -25693690 + (CATA)n Simple_repeat Simple_repeat 4 88 0 22 35 0 0 chr4 176636617 176636646 -25691701 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr4 176636851 176636871 -25691476 + (A)n Simple_repeat Simple_repeat 1 20 0 35 63 0 0 chr4 176637504 176637567 -25690780 + AT_rich Low_complexity Low_complexity 1 63 0 26 0 0 0 chr4 176637729 176637755 -25690592 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 176638691 176638713 -25689634 + AT_rich Low_complexity Low_complexity 1 22 0 274 306 72 67 chr4 176640509 176640689 -25687658 - MLT1E LTR MaLR -294 299 119 522 294 55 7 chr4 176640717 176640863 -25687484 - MLT1E LTR MaLR -438 155 3 336 24 0 0 chr4 176642973 176643014 -25685333 + (TG)n Simple_repeat Simple_repeat 2 42 0 854 339 66 10 chr4 176643028 176643435 -25684912 + LTR16A LTR ERVL 19 448 -2 396 0 0 0 chr4 176643446 176643490 -25684857 + (TAA)n Simple_repeat Simple_repeat 2 45 0 235 339 95 53 chr4 176643718 176643907 -25684440 + L3 LINE CR1 1201 1397 -180 26 30 0 0 chr4 176646702 176646735 -25681612 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr4 176646798 176646822 -25681525 + AT_rich Low_complexity Low_complexity 1 24 0 598 278 98 66 chr4 176647224 176647631 -25680716 + MLT1L LTR MaLR 196 615 0 711 349 50 26 chr4 176647694 176648046 -25680301 + MLT1J LTR MaLR 1 368 -143 1785 141 54 35 chr4 176648046 176648414 -25679933 - THE1C LTR MaLR 0 375 1 711 349 50 26 chr4 176648414 176648517 -25679830 + MLT1J LTR MaLR 368 467 -44 980 230 47 47 chr4 176648578 176648874 -25679473 - AluJo SINE Alu -5 297 2 510 50 112 0 chr4 176648886 176649128 -25679219 + (TA)n Simple_repeat Simple_repeat 1 268 0 1927 120 18 3 chr4 176649128 176649411 -25678936 - AluSg SINE Alu -23 287 1 1811 140 0 4 chr4 176649579 176649843 -25678504 + AluSx SINE Alu 36 298 -14 1368 116 149 4 chr4 176650359 176650600 -25677747 + L1MA5A LINE L1 6019 6294 -3 25 0 0 0 chr4 176650600 176650625 -25677722 + AT_rich Low_complexity Low_complexity 1 25 0 1042 51 0 7 chr4 176651249 176651387 -25676960 + L1PA4 LINE L1 6019 6155 0 244 323 131 0 chr4 176651970 176652069 -25676278 + MIR SINE MIR 2 113 -149 21 36 0 0 chr4 176652775 176652803 -25675544 + AT_rich Low_complexity Low_complexity 1 28 0 229 128 0 0 chr4 176652865 176652904 -25675443 - MER114 LTR ERV -293 355 317 275 413 67 18 chr4 176653619 176653842 -25674505 + L2 LINE L2 2827 3060 -212 25 31 0 0 chr4 176654049 176654081 -25674266 + AT_rich Low_complexity Low_complexity 1 32 0 2683 76 8 3 chr4 176654585 176654954 -25673393 + THE1B-int LTR MaLR 1210 1580 0 2075 131 76 15 chr4 176654954 176655297 -25673050 + THE1B LTR MaLR 1 364 0 2001 107 7 17 chr4 176655744 176656042 -25672305 - AluSq SINE Alu -18 295 1 208 87 0 43 chr4 176658462 176658508 -25669839 + (TA)n Simple_repeat Simple_repeat 2 45 0 1878 162 0 55 chr4 176660742 176661106 -25667241 - MER2 DNA MER2_type 0 344 1 1618 175 3 29 chr4 176663880 176664188 -25664159 - AluJb SINE Alu -12 300 1 1537 182 0 33 chr4 176664579 176664881 -25663466 + AluJo SINE Alu 1 292 -20 4570 159 39 14 chr4 176665105 176665961 -25662386 + L1MB2 LINE L1 5293 6169 -2 406 179 48 0 chr4 176665972 176666140 -25662207 + (TA)n Simple_repeat Simple_repeat 1 176 0 875 55 18 0 chr4 176666241 176666351 -25661996 - AluY SINE Alu -177 134 23 1106 266 22 32 chr4 176666369 176666771 -25661576 - L1MDa LINE L1 -6140 400 3 923 169 52 172 chr4 176666791 176667007 -25661340 - AluJo SINE Alu -13 289 123 267 31 0 0 chr4 176667007 176667039 -25661308 + (TTG)n Simple_repeat Simple_repeat 2 33 0 923 169 52 172 chr4 176667039 176667148 -25661199 - AluJo SINE Alu -179 123 3 547 294 139 25 chr4 176667189 176667505 -25660842 + MLT1J LTR MaLR 24 375 -136 2191 115 7 0 chr4 176667537 176667841 -25660506 + AluSq SINE Alu 1 306 -7 1389 241 42 89 chr4 176667885 176668297 -25660050 + MLT1F LTR MaLR 110 466 -76 2035 128 0 3 chr4 176668297 176668593 -25659754 - AluSg SINE Alu -11 299 5 1389 241 42 89 chr4 176668593 176668667 -25659680 + MLT1F LTR MaLR 466 542 0 189 0 0 0 chr4 176668700 176668721 -25659626 + (TG)n Simple_repeat Simple_repeat 1 21 0 2083 128 16 0 chr4 176669218 176669524 -25658823 - AluSx SINE Alu -1 311 1 223 350 126 12 chr4 176669593 176669839 -25658508 + L2 LINE L2 3016 3289 -24 199 304 0 0 chr4 176671095 176671141 -25657206 - MIR3 SINE MIR -52 156 111 257 211 39 123 chr4 176671621 176671825 -25656522 + MER112 DNA MER1_type 41 227 -33 961 133 0 0 chr4 176671843 176671978 -25656369 - AluSx SINE Alu -139 173 39 477 315 112 36 chr4 176672035 176672704 -25655643 - HAL1 LINE L1 -124 2383 1664 195 42 0 0 chr4 176672930 176672954 -25655393 + (TA)n Simple_repeat Simple_repeat 2 25 0 441 297 32 9 chr4 176672966 176673185 -25655162 - HAL1 LINE L1 -1435 1072 849 589 322 54 11 chr4 176673282 176673636 -25654711 - HAL1 LINE L1 -2138 369 1 24 53 0 0 chr4 176673639 176673677 -25654670 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr4 176674747 176674771 -25653576 + AT_rich Low_complexity Low_complexity 1 24 0 489 229 0 19 chr4 176674796 176674901 -25653446 - MER115 DNA AcHobo -3 690 588 457 310 125 38 chr4 176675882 176676169 -25652178 - MLT1J LTR MaLR -174 337 26 987 208 5 5 chr4 176676731 176676947 -25651400 - L1 LINE L1 -1133 5013 4798 3177 211 29 18 chr4 176676951 176677801 -25650546 + L1MB1 LINE L1 5164 6030 -159 26 0 0 0 chr4 176677964 176677990 -25650357 + AT_rich Low_complexity Low_complexity 1 26 0 251 164 68 0 chr4 176678999 176679072 -25649275 + (CATA)n Simple_repeat Simple_repeat 3 80 0 653 207 84 81 chr4 176679452 176679786 -25648561 - MLT1A1 LTR MaLR 0 396 19 21 36 0 0 chr4 176680032 176680060 -25648287 + AT_rich Low_complexity Low_complexity 1 28 0 4825 138 54 10 chr4 176680144 176680979 -25647368 + L1PB2 LINE L1 5279 6150 -1 264 258 109 52 chr4 176681504 176681833 -25646514 - L1 LINE L1 -3114 3032 2685 266 326 90 42 chr4 176682077 176682221 -25646126 + MIR3 SINE MIR 52 202 -6 1513 107 39 0 chr4 176683513 176683747 -25644600 + MER75B DNA T2_type 1 243 0 7605 28 0 7 chr4 176683938 176685082 -25643265 + L1PA3 LINE L1 5015 6152 -3 378 0 0 0 chr4 176685114 176685156 -25643191 + (CA)n Simple_repeat Simple_repeat 1 42 0 1911 95 61 34 chr4 176685167 176685462 -25642885 + AluSg SINE Alu 1 303 -7 1781 145 85 0 chr4 176686008 176686290 -25642057 - AluSx SINE Alu -6 306 1 5698 188 37 7 chr4 176686518 176687756 -25640591 - L1MC2 LINE L1 -30 6314 5008 2070 184 18 0 chr4 176687756 176688152 -25640195 + MER57A LTR ERV1 1 403 0 5698 188 37 7 chr4 176688152 176688522 -25639825 - L1MC2 LINE L1 -1336 5008 4651 1179 243 21 114 chr4 176688901 176689478 -25638869 - L1ME3A LINE L1 -214 5956 5434 22 0 0 0 chr4 176689952 176689974 -25638373 + AT_rich Low_complexity Low_complexity 1 22 0 4023 89 9 0 chr4 176690018 176690567 -25637780 + MER41A LTR ERV1 1 554 0 8575 127 13 17 chr4 176691796 176693227 -25635120 + HERVH LTR ERV1 1016 2441 -5272 368 253 22 0 chr4 176693491 176693582 -25634765 + MER110 LTR ERV1 360 452 -39 244 390 47 47 chr4 176694117 176694417 -25633930 - L2 LINE L2 -578 2736 2437 1816 215 17 29 chr4 176694984 176695403 -25632944 + MLT1C LTR MaLR 54 467 0 2266 105 0 7 chr4 176695416 176695720 -25632627 - AluSq SINE Alu -11 302 1 3469 204 14 6 chr4 176696092 176696894 -25631453 - L1 LINE L1 -1449 4697 3890 331 273 68 19 chr4 176696919 176697080 -25631267 - L1PA15-16 LINE L1 -6518 331 163 552 56 0 0 chr4 176697108 176697179 -25631168 + Alu SINE Alu 1 71 -238 514 246 0 17 chr4 176697199 176697317 -25631030 - L1PA15-16 LINE L1 -6733 116 1 232 206 0 32 chr4 176697327 176697390 -25630957 - L1ME3A LINE L1 -14 6156 6096 2439 23 0 0 chr4 176697499 176697801 -25630546 - L1P LINE L1 -2985 3161 2860 359 256 40 101 chr4 176697925 176698152 -25630195 - L2 LINE L2 0 3313 3101 462 36 0 0 chr4 176699823 176699879 -25628468 + (TG)n Simple_repeat Simple_repeat 2 57 0 26 50 0 0 chr4 176701290 176701330 -25627017 + AT_rich Low_complexity Low_complexity 1 40 0 14263 40 1 1 chr4 176701738 176703522 -25624825 + L1P LINE L1 1451 3234 -2912 355 346 0 0 chr4 176703632 176703794 -25624553 + T-rich Low_complexity Low_complexity 1 162 0 381 188 72 124 chr4 176703939 176704189 -25624158 + MER7A DNA MER2_type 1 235 -111 304 169 133 0 chr4 176704175 176704258 -25624089 + MER7A DNA MER2_type 171 264 -72 * 267 135 58 0 chr4 176704252 176704304 -25624043 + MER7A DNA MER2_type 172 226 -111 * 285 138 103 0 chr4 176704329 176704387 -25623960 + MER7A DNA MER2_type 171 234 -102 228 125 0 0 chr4 176704388 176704420 -25623927 + MER7A DNA MER2_type 204 235 -111 * 293 151 38 0 chr4 176704406 176704459 -25623888 + MER7A DNA MER2_type 171 225 -111 242 154 0 0 chr4 176704459 176704498 -25623849 + MER7A DNA MER2_type 197 235 -111 * 257 189 38 0 chr4 176704484 176704537 -25623810 + MER7A DNA MER2_type 172 226 -111 * 314 110 25 143 chr4 176704523 176704654 -25623693 + Tigger3(Golem) DNA MER2_type 2863 2946 -83 * 316 94 24 152 chr4 176704640 176704732 -25623615 + Tigger3(Golem) DNA MER2_type 2864 2937 -92 287 151 38 0 chr4 176704718 176704771 -25623576 + Tigger3(Golem) DNA MER2_type 2873 2927 -102 * 300 151 38 0 chr4 176704757 176704810 -25623537 + Tigger3(Golem) DNA MER2_type 2863 2917 -112 * 335 100 29 97 chr4 176704796 176704927 -25623420 + Tigger3(Golem) DNA MER2_type 2863 2936 -93 305 113 38 0 chr4 176704913 176704966 -25623381 + Tigger3(Golem) DNA MER2_type 2873 2927 -102 * 1012 159 12 0 chr4 176704952 176705115 -25623232 + Tigger3(Golem) DNA MER2_type 2863 3027 -2 23 54 0 0 chr4 176705244 176705281 -25623066 + AT_rich Low_complexity Low_complexity 1 37 0 365 339 69 31 chr4 176705917 176706177 -25622170 - L1M4 LINE L1 -5017 1617 1348 381 15 0 90 chr4 176706271 176706338 -25622009 - L1PA4 LINE L1 0 6155 6095 415 326 128 59 chr4 176706717 176707156 -25621191 + L2 LINE L2 2839 3307 -6 30 27 0 0 chr4 176707386 176707423 -25620924 + AT_rich Low_complexity Low_complexity 1 37 0 300 286 87 38 chr4 176707689 176707874 -25620473 + L1ME4a LINE L1 5926 6119 -2 1722 176 3 16 chr4 176708461 176708773 -25619574 + AluSx SINE Alu 5 312 0 217 234 0 0 chr4 176708833 176708880 -25619467 + (CATA)n Simple_repeat Simple_repeat 4 50 0 16045 35 4 0 chr4 176709433 176711404 -25616943 + L1P LINE L1 3322 5299 -847 240 353 58 7 chr4 176711517 176711656 -25616691 + MIR3 SINE MIR 57 202 -6 29 28 0 0 chr4 176711841 176711877 -25616470 + AT_rich Low_complexity Low_complexity 1 36 0 187 351 11 75 chr4 176712218 176712312 -25616035 - MIR SINE MIR -89 119 32 217 286 9 38 chr4 176712885 176712990 -25615357 + CT-rich Low_complexity Low_complexity 3 104 0 8695 65 108 8 chr4 176713328 176714583 -25613764 + L1P LINE L1 1 1381 -4765 9601 103 6 2 chr4 176714759 176716986 -25611361 - L1PA3 LINE L1 -63 6092 3857 17271 31 2 1 chr4 176717092 176719196 -25609151 + L1P LINE L1 2629 4735 -1411 331 304 87 47 chr4 176719296 176719894 -25608453 - L1M4 LINE L1 -5201 1341 720 251 258 48 0 chr4 176720575 176720637 -25607710 - HAL1 LINE L1 -1812 695 631 1190 105 8 10 chr4 176721174 176721479 -25606868 + AluSq SINE Alu 32 304 -9 2031 115 7 14 chr4 176721484 176721779 -25606568 + AluSx SINE Alu 6 298 -14 336 307 12 43 chr4 176721885 176722048 -25606299 + L1MCb LINE L1 443 600 -5445 3632 187 107 35 chr4 176722060 176723017 -25605330 + L1MC3 LINE L1 6760 7785 0 1514 218 77 60 chr4 176723010 176723676 -25604671 + L1MC4a LINE L1 6827 7503 -305 * 6247 85 6 1 chr4 176723644 176724491 -25603856 + L1PA10 LINE L1 5314 6164 -4 1158 262 96 40 chr4 176724966 176725696 -25602651 - L1MEc LINE L1 -1577 4638 3868 301 384 52 27 chr4 176725700 176726216 -25602131 + L1M2 LINE L1 13 541 -6308 1133 232 107 34 chr4 176726668 176727236 -25601111 - L1MEc LINE L1 -3213 3002 2393 307 332 32 0 chr4 176727241 176727428 -25600919 - L1MEc LINE L1 -4274 2122 1930 453 330 81 19 chr4 176727435 176727865 -25600482 - L1MEc LINE L1 -4503 1893 1437 1594 169 145 17 chr4 176728008 176728352 -25599995 + MSTA LTR MaLR 41 428 0 715 169 0 0 chr4 176728753 176728871 -25599476 + AluJb SINE Alu 1 118 -194 594 237 209 21 chr4 176728931 176729483 -25598864 - L1MEc LINE L1 -3600 3341 2712 1840 206 79 0 chr4 176729483 176729851 -25598496 - MER47B DNA MER2_type 0 418 22 920 192 0 0 chr4 176729870 176730026 -25598321 - FRAM SINE Alu -10 156 1 231 218 30 89 chr4 176730036 176730137 -25598210 - L1MEc LINE L1 -4431 2691 2597 544 311 128 46 chr4 176730250 176730897 -25597450 - L1MEc LINE L1 -5695 728 29 35 86 0 9 chr4 176731025 176731068 -25597279 + AT_rich Low_complexity Low_complexity 1 43 -72 709 198 0 0 chr4 176731068 176731179 -25597168 - FLAM_A SINE Alu -18 115 5 35 86 0 9 chr4 176731179 176731251 -25597096 + AT_rich Low_complexity Low_complexity 43 115 0 1008 269 110 59 chr4 176731695 176732388 -25595959 + L1ME LINE L1 3185 3841 -2305 2020 104 7 7 chr4 176732388 176732677 -25595670 + AluSp SINE Alu 1 289 -24 1008 269 110 59 chr4 176732677 176732764 -25595583 + L1ME LINE L1 3841 3922 -2224 2036 126 7 13 chr4 176732764 176733074 -25595273 + AluSx SINE Alu 1 308 -4 1008 269 110 59 chr4 176733074 176733246 -25595101 + L1ME LINE L1 3922 4187 -1959 303 278 88 51 chr4 176733240 176733561 -25594786 + L1ME LINE L1 5272 5615 -549 * 315 0 0 0 chr4 176734026 176734061 -25594286 + (T)n Simple_repeat Simple_repeat 1 35 0 6601 197 4 31 chr4 176734061 176735593 -25592754 - L1P3 LINE L1 -3825 2636 1102 1394 158 8 4 chr4 176735594 176735828 -25592519 - L1P3 LINE L1 -5640 235 1 907 199 28 22 chr4 176737962 176738143 -25590204 + MER20 DNA MER1_type 7 188 -31 28 48 0 0 chr4 176738821 176738863 -25589484 + AT_rich Low_complexity Low_complexity 1 42 0 614 193 17 0 chr4 176738957 176739076 -25589271 + FLAM_C SINE Alu 7 127 -16 24 32 0 0 chr4 176739807 176739838 -25588509 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr4 176740430 176740459 -25587888 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 176741073 176741096 -25587251 + AT_rich Low_complexity Low_complexity 1 23 0 300 280 13 0 chr4 176741283 176741358 -25586989 + L2 LINE L2 3195 3270 -43 216 67 0 0 chr4 176741644 176741674 -25586673 + (TG)n Simple_repeat Simple_repeat 2 31 0 22 56 0 0 chr4 176742262 176742298 -25586049 + AT_rich Low_complexity Low_complexity 1 36 0 429 269 75 56 chr4 176742556 176742716 -25585631 + L3 LINE CR1 613 775 -802 2235 106 0 10 chr4 176742949 176743260 -25585087 - AluSq SINE Alu -5 308 1 913 213 86 91 chr4 176743516 176743924 -25584423 - L1ME LINE L1 -381 5789 5384 1234 273 90 45 chr4 176743968 176744924 -25583423 - L1ME LINE L1 -752 5394 4396 273 57 0 0 chr4 176746840 176746875 -25581472 + (TA)n Simple_repeat Simple_repeat 2 36 0 269 271 0 0 chr4 176747600 176747685 -25580662 - L1MC4 LINE L1 -1350 6692 6608 29 78 0 0 chr4 176747707 176747771 -25580576 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr4 176748202 176748223 -25580124 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr4 176749563 176749588 -25578759 + (TC)n Simple_repeat Simple_repeat 2 26 0 385 18 0 36 chr4 176749588 176749644 -25578703 + (CCTA)n Simple_repeat Simple_repeat 2 55 0 866 248 46 21 chr4 176749691 176749991 -25578356 - L1MC/D LINE L1 -576 5590 5317 261 224 65 9 chr4 176751385 176751492 -25576855 + L1ME2 LINE L1 6023 6135 -29 2202 103 36 0 chr4 176751953 176752254 -25576093 - AluSx SINE Alu 0 312 1 22 0 0 0 chr4 176753118 176753140 -25575207 + AT_rich Low_complexity Low_complexity 1 22 0 3494 152 58 36 chr4 176754246 176754958 -25573389 + LTR8A LTR ERV1 1 727 0 3703 134 94 14 chr4 176755045 176755703 -25572644 - MER50 LTR ERV1 -23 711 1 279 356 61 37 chr4 176755827 176756122 -25572225 + L2 LINE L2 2550 2851 -463 462 350 65 27 chr4 176758482 176758776 -25569571 + L1MCc LINE L1 367 671 -5752 1025 287 67 25 chr4 176758866 176759225 -25569122 - MLT1D LTR MaLR 0 505 132 2160 112 0 7 chr4 176759252 176759556 -25568791 + AluSg SINE Alu 1 302 -8 516 307 45 24 chr4 176759590 176759971 -25568376 + L1MCc LINE L1 1619 2007 -4934 1118 244 132 17 chr4 176761103 176761460 -25566887 + L1M3c LINE L1 1 398 -5743 1603 228 33 71 chr4 176761622 176762140 -25566207 - L1 LINE L1 -3256 2890 2393 349 242 51 19 chr4 176762132 176762289 -25566058 + L1ME LINE L1 869 1030 -5175 * 323 291 18 79 chr4 176762361 176762526 -25565821 + L1ME LINE L1 1172 1326 -4889 218 266 8 0 chr4 176762618 176762746 -25565601 + (TA)n Simple_repeat Simple_repeat 1 129 0 512 233 25 25 chr4 176762808 176763010 -25565337 + L1ME LINE L1 1967 2168 -4228 858 274 53 39 chr4 176763030 176763523 -25564824 + L1ME LINE L1 2257 2756 -3459 301 303 77 26 chr4 176763523 176763718 -25564629 - L1M4 LINE L1 -2394 3752 3548 4291 130 7 38 chr4 176763718 176764416 -25563931 + Tigger1 DNA MER2_type 1524 2199 -219 2077 104 20 0 chr4 176764416 176764713 -25563634 - AluSg SINE Alu -7 303 1 4291 130 7 38 chr4 176764713 176764752 -25563595 + Tigger1 DNA MER2_type 2199 2238 -180 238 214 0 0 chr4 176765025 176765081 -25563266 - L1ME4a LINE L1 -3 6118 6063 531 42 0 0 chr4 176765084 176765155 -25563192 - AluY SINE Alu -7 303 233 334 306 12 29 chr4 176765486 176765656 -25562691 + CT-rich Low_complexity Low_complexity 2 168 0 523 43 0 0 chr4 176766242 176766312 -25562035 + AluY SINE Alu 235 304 -7 1316 175 173 61 chr4 176767132 176767594 -25560753 - MER67D LTR ERV1 0 514 1 331 271 9 9 chr4 176767692 176767799 -25560548 - MIR SINE MIR -61 201 95 380 77 0 0 chr4 176768095 176768147 -25560200 - Alu SINE Alu -15 286 235 22 0 0 0 chr4 176769880 176769902 -25558445 + AT_rich Low_complexity Low_complexity 1 22 0 202 364 70 21 chr4 176769944 176770087 -25558260 - MIR3 SINE MIR -12 196 47 700 323 23 15 chr4 176770231 176770494 -25557853 + L2 LINE L2 2586 2850 -464 442 305 90 5 chr4 176770533 176770733 -25557614 - MIR SINE MIR -43 219 3 316 270 34 11 chr4 176771059 176771148 -25557199 + MER7A DNA MER2_type 1 89 -257 632 275 31 57 chr4 176771286 176771601 -25556746 - MLT1G3 LTR MaLR -254 276 1 4623 29 6 0 chr4 176772484 176773032 -25555315 - L1PA3 LINE L1 0 6155 5605 625 65 5 70 chr4 176773132 176773318 -25555029 + (TA)n Simple_repeat Simple_repeat 2 175 0 248 288 127 8 chr4 176773928 176774046 -25554301 + LTR33A LTR ERVL 101 232 -291 23 33 0 0 chr4 176774358 176774388 -25553959 + AT_rich Low_complexity Low_complexity 1 30 0 675 200 15 7 chr4 176774391 176774526 -25553821 - FRAM SINE Alu -15 161 26 24 32 0 0 chr4 176774531 176774562 -25553785 + AT_rich Low_complexity Low_complexity 1 31 0 502 308 103 27 chr4 176774589 176774956 -25553391 + HAL1b LINE L1 245 639 -709 1781 117 14 7 chr4 176775152 176775434 -25552913 + AluSq SINE Alu 12 295 -18 2231 51 10 14 chr4 176777864 176778158 -25550189 + AluY SINE Alu 1 293 -18 642 323 98 40 chr4 176779076 176779476 -25548871 - L3 LINE CR1 -1154 423 1 23 68 0 0 chr4 176780505 176780549 -25547798 + AT_rich Low_complexity Low_complexity 1 44 0 2247 94 10 0 chr4 176780758 176781056 -25547291 - AluSp SINE Alu -8 305 5 459 339 38 25 chr4 176782017 176782258 -25546089 + L2 LINE L2 1798 2041 -1273 312 363 10 39 chr4 176782616 176782820 -25545527 + MLT1I LTR MaLR 90 287 -122 263 218 51 39 chr4 176783672 176783750 -25544597 - MIR SINE MIR -56 206 128 409 70 0 0 chr4 176784050 176784107 -25544240 - L1PA4 LINE L1 -2 6153 6097 263 179 0 45 chr4 176785204 176785271 -25543076 + (TATATG)n Simple_repeat Simple_repeat 4 67 0 251 329 12 0 chr4 176785402 176785484 -25542863 + L2 LINE L2 3229 3311 -2 23 33 0 0 chr4 176785490 176785520 -25542827 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 176787011 176787032 -25541315 + AT_rich Low_complexity Low_complexity 1 21 0 612 299 26 103 chr4 176787127 176787555 -25540792 - MLT1F1-int LTR MaLR -17 1354 960 760 289 26 20 chr4 176788113 176788590 -25539757 - MLT1F1-int LTR MaLR -771 600 4 1990 155 49 36 chr4 176788605 176789149 -25539198 - MLT2A2 LTR ERVL 0 554 1 254 175 35 0 chr4 176789149 176789205 -25539142 - MLT1F1 LTR MaLR -7 560 503 1036 247 43 98 chr4 176789302 176789792 -25538555 - MLT1F1 LTR MaLR -38 529 67 1070 259 43 102 chr4 176790100 176790640 -25537707 + LTR40a LTR ERVL 7 514 -5 307 174 0 43 chr4 176790681 176790750 -25537597 - L1MC/D LINE L1 -2221 5821 5756 723 86 0 19 chr4 176791075 176791180 -25537167 + LTR7 LTR ERV1 346 448 -2 8271 96 51 17 chr4 176791182 176792468 -25535879 + HERVH LTR ERV1 1 1330 -6383 317 69 86 35 chr4 176792569 176792627 -25535720 + Alu SINE Alu 241 301 0 341 185 0 25 chr4 176792627 176792708 -25535639 + L1 LINE L1 4632 4710 -1436 1462 103 0 10 chr4 176792708 176792912 -25535435 + AluY SINE Alu 1 202 -109 478 241 28 46 chr4 176792962 176793178 -25535169 + L1M4 LINE L1 4456 4667 -1479 690 225 58 46 chr4 176793243 176793416 -25534931 - MER5A DNA MER1_type -14 175 1 234 296 87 28 chr4 176793464 176793606 -25534741 + MIR3 SINE MIR 2 167 -41 1944 207 28 5 chr4 176794684 176795071 -25533276 - MSTD LTR MaLR 0 396 1 274 167 0 111 chr4 176795476 176795548 -25532799 + polypurine Low_complexity Low_complexity 2 65 0 193 337 92 10 chr4 176796185 176796283 -25532064 + MER5A DNA MER1_type 28 133 -56 180 135 0 54 chr4 176796781 176796818 -25531529 - MIR SINE MIR -75 187 153 218 401 62 16 chr4 176797437 176797629 -25530718 + MIR3 SINE MIR 3 203 -5 987 229 105 25 chr4 176797740 176798154 -25530193 + MLT1D LTR MaLR 1 505 0 977 284 111 45 chr4 176798197 176798712 -25529635 + MLT1G LTR MaLR 10 558 -32 308 362 57 60 chr4 176798921 176799255 -25529092 + L2 LINE L2 2325 2657 -657 647 350 44 47 chr4 176799453 176800153 -25528194 + HERVL LTR ERVL 3117 3814 -1840 577 361 36 18 chr4 176800430 176800827 -25527520 + HERVL LTR ERVL 4288 4659 -826 26 30 0 0 chr4 176801090 176801123 -25527224 + AT_rich Low_complexity Low_complexity 1 33 0 2154 113 72 23 chr4 176801903 176802294 -25526053 - LTR7 LTR ERV1 -40 410 1 2429 79 50 13 chr4 176802294 176802672 -25525675 - HERVH LTR ERV1 0 7713 7322 1106 154 22 0 chr4 176802670 176802852 -25525495 - HERVH LTR ERV1 -1894 5819 5634 * 1196 194 28 32 chr4 176803824 176804077 -25524270 + AluJo SINE Alu 25 276 -36 35 54 0 0 chr4 176804084 176804140 -25524207 + AT_rich Low_complexity Low_complexity 1 56 0 318 209 22 0 chr4 176804812 176804951 -25523396 + (TA)n Simple_repeat Simple_repeat 2 143 0 426 331 76 71 chr4 176807284 176807972 -25520375 + L2 LINE L2 1933 2623 -691 23 68 0 0 chr4 176808511 176808555 -25519792 + AT_rich Low_complexity Low_complexity 1 44 0 2303 97 7 0 chr4 176808765 176809064 -25519283 - AluSp SINE Alu -8 305 5 1887 139 3 13 chr4 176810124 176810427 -25517920 + AluSq SINE Alu 1 300 -13 1628 223 19 36 chr4 176810574 176810991 -25517356 - MLT1C LTR MaLR -4 463 54 271 215 9 9 chr4 176811195 176811302 -25517045 + (TA)n Simple_repeat Simple_repeat 2 108 0 517 283 45 20 chr4 176812531 176812729 -25515618 + MIR SINE MIR 45 247 -15 2093 71 7 24 chr4 176812943 176813239 -25515108 - AluY SINE Alu -20 291 1 698 296 125 12 chr4 176813326 176813670 -25514677 + L2 LINE L2 2931 3313 0 370 312 48 0 chr4 176813706 176813831 -25514516 - MIR SINE MIR -73 189 59 23 68 0 0 chr4 176814738 176814782 -25513565 + AT_rich Low_complexity Low_complexity 1 44 0 449 351 115 23 chr4 176814932 176815445 -25512902 + L2 LINE L2 1955 2514 -800 198 0 0 0 chr4 176817562 176817584 -25510763 + (CA)n Simple_repeat Simple_repeat 2 23 0 322 278 112 16 chr4 176819298 176819485 -25508862 - LTR50 LTR ERVL -107 688 484 279 272 65 33 chr4 176819538 176819630 -25508717 - LTR50 LTR ERVL -585 210 116 25 75 0 0 chr4 176820992 176821045 -25507302 + AT_rich Low_complexity Low_complexity 1 53 0 2201 133 28 2 chr4 176821440 176821936 -25506411 - HERVH LTR ERV1 -2634 5079 4488 2758 102 7 5 chr4 176821938 176822349 -25505998 - HERVH LTR ERV1 -3720 3993 3582 656 152 9 0 chr4 176822350 176822462 -25505885 - HERVH LTR ERV1 -4461 3252 3140 * 9822 91 5 13 chr4 176822441 176823856 -25504491 - HERVH LTR ERV1 -4718 2995 1593 290 151 38 0 chr4 176824040 176824093 -25504254 + Tigger3(Golem) DNA MER2_type 2864 2918 -111 244 162 27 122 chr4 176824118 176824192 -25504155 + Tigger3(Golem) DNA MER2_type 2873 2939 -90 314 113 38 0 chr4 176824196 176824249 -25504098 + Tigger3(Golem) DNA MER2_type 2863 2917 -112 304 82 3 197 chr4 176824255 176824326 -25504021 + Tigger3(Golem) DNA MER2_type 2864 2936 -93 295 96 58 0 chr4 176824351 176824403 -25503944 + Tigger3(Golem) DNA MER2_type 2864 2918 -111 277 170 38 0 chr4 176824389 176824442 -25503905 + Tigger3(Golem) DNA MER2_type 2873 2927 -102 * 288 170 38 0 chr4 176824428 176824481 -25503866 + Tigger3(Golem) DNA MER2_type 2864 2918 -111 269 135 58 0 chr4 176824467 176824519 -25503828 + Tigger3(Golem) DNA MER2_type 2873 2927 -102 * 313 94 35 163 chr4 176824505 176824597 -25503750 + Tigger3(Golem) DNA MER2_type 2863 2936 -93 260 151 38 0 chr4 176824583 176824636 -25503711 + Tigger3(Golem) DNA MER2_type 2873 2927 -102 * 988 172 12 0 chr4 176824622 176824785 -25503562 + Tigger3(Golem) DNA MER2_type 2864 3028 -1 408 40 0 0 chr4 176826141 176826191 -25502156 + (TG)n Simple_repeat Simple_repeat 2 51 0 641 238 61 58 chr4 176826588 176826849 -25501498 - MLT1G3 LTR MaLR -177 353 92 4023 29 20 2 chr4 176826949 176827686 -25500661 - L1P2 LINE L1 -508 5647 4902 218 333 74 25 chr4 176827789 176827951 -25500396 + L2 LINE L2 1829 1998 -1316 270 397 34 6 chr4 176828337 176828516 -25499831 + L2 LINE L2 2868 3051 -221 218 306 171 9 chr4 176828705 176828816 -25499531 + L2 LINE L2 3180 3308 -5 1526 174 75 3 chr4 176828960 176829242 -25499105 - 7SLRNA srpRNA srpRNA -1 319 18 387 243 10 19 chr4 176829902 176830005 -25498342 + L2 LINE L2 3204 3305 -8 658 294 171 33 chr4 176830609 176830977 -25497370 + L2 LINE L2 2880 3298 -15 1870 157 9 27 chr4 176831219 176831557 -25496790 + MER72 LTR ERV1 1 332 -390 1441 202 18 3 chr4 176831554 176831836 -25496511 + MER72 LTR ERV1 434 719 -3 * 308 269 96 39 chr4 176832137 176832241 -25496106 + L2 LINE L2 3189 3298 -15 1918 151 9 27 chr4 176832484 176832822 -25495525 + MER72 LTR ERV1 1 332 -390 1535 200 14 0 chr4 176832819 176833104 -25495243 + MER72 LTR ERV1 434 722 0 * 1433 90 0 0 chr4 176833428 176833629 -25494718 + L1PA4 LINE L1 5941 6141 -14 22 70 0 0 chr4 176833668 176833711 -25494636 + AT_rich Low_complexity Low_complexity 1 43 0 203 182 34 11 chr4 176834532 176834620 -25493727 + (TA)n Simple_repeat Simple_repeat 2 91 0 411 349 103 9 chr4 176836675 176836907 -25491440 + LTR16A LTR ERVL 196 449 -1 391 348 0 0 chr4 176837024 176837172 -25491175 + HERVL LTR ERVL 2410 2540 -3114 971 325 18 50 chr4 176837210 176837712 -25490635 + HERVL LTR ERVL 2724 3209 -2555 1029 302 50 27 chr4 176837846 176838286 -25490061 + HUERS-P3 LTR ERV1 4050 4499 -148 511 251 71 105 chr4 176838589 176838971 -25489376 + MER110 LTR ERV1 84 452 -39 235 204 18 35 chr4 176839940 176840053 -25488294 + GA-rich Low_complexity Low_complexity 5 115 0 21 71 0 0 chr4 176841214 176841256 -25487091 + AT_rich Low_complexity Low_complexity 1 42 0 727 284 48 43 chr4 176841569 176842177 -25486170 + L1ME3 LINE L1 4739 5349 -797 347 215 32 21 chr4 176842181 176842274 -25486073 + L1M1 LINE L1 5377 5470 -832 * 684 314 81 40 chr4 176842260 176842706 -25485641 + L1ME3 LINE L1 5568 6031 -131 825 244 0 0 chr4 176844820 176844988 -25483359 + MER58B DNA MER1_type 173 340 -1 2784 159 28 17 chr4 176845036 176845507 -25482840 + LTR9B LTR ERV1 1 476 -168 14212 160 32 3 chr4 176845507 176847876 -25480471 + HUERS-P3 LTR ERV1 1829 4267 -4652 3145 187 48 3 chr4 176847976 176848560 -25479787 + LTR9B LTR ERV1 35 644 0 2510 219 47 34 chr4 176848586 176849229 -25479118 + L1PA13 LINE L1 267 917 -5870 23636 139 16 5 chr4 176849415 176853822 -25474525 + HUERS-P3 LTR ERV1 3077 7630 -1289 406 248 126 39 chr4 176854027 176854257 -25474090 + MER92B LTR ERV1 387 636 0 2088 114 15 63 chr4 176855284 176855678 -25472669 - THE1C LTR MaLR 0 375 1 3110 128 4 12 chr4 176855679 176856163 -25472184 - THE1C-int LTR MaLR -1 1579 1100 3529 235 41 50 chr4 176856181 176857155 -25471192 - L1M1 LINE L1 -6585 980 16 22 88 0 0 chr4 176858269 176858326 -25470021 + AT_rich Low_complexity Low_complexity 1 57 0 25 51 0 0 chr4 176859073 176859112 -25469235 + AT_rich Low_complexity Low_complexity 1 39 0 981 236 178 54 chr4 176859163 176859657 -25468690 + MER39 LTR ERV1 4 682 -25 335 298 38 15 chr4 176859758 176859889 -25468458 + MER39-int LTR ERV1 77 210 -6121 * 345 169 34 22 chr4 176859886 176859975 -25468372 + MER39-int LTR ERV1 1288 1377 -4954 315 206 0 15 chr4 176860129 176860197 -25468150 + MER34-int LTR ERV1 549 615 -5716 931 218 100 106 chr4 176860232 176860814 -25467533 + MER34-int LTR ERV1 300 595 -4341 568 203 86 6 chr4 176860817 176860980 -25467367 - L1MA8 LINE L1 -108 6183 6008 5849 206 44 67 chr4 176860982 176862877 -25465470 + MER34-int LTR ERV1 4333 6183 -148 270 222 267 11 chr4 176862906 176862996 -25465351 + MER34 LTR ERV1 6 118 -424 982 257 88 50 chr4 176863008 176863405 -25464942 + MER39 LTR ERV1 296 707 0 342 256 22 0 chr4 176865333 176865423 -25462924 - MER92B LTR ERV1 -2 634 543 236 311 66 19 chr4 176866175 176866281 -25462066 - L2 LINE L2 -50 3222 3112 510 70 0 0 chr4 176867333 176867404 -25460943 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 1990 111 4 7 chr4 176867548 176867828 -25460519 - AluSp SINE Alu -1 312 34 232 280 282 10 chr4 176869646 176869993 -25458354 - L2 LINE L2 -3 3310 2810 231 355 80 0 chr4 176870432 176870570 -25457777 + L2 LINE L2 3164 3312 -1 255 382 45 0 chr4 176870675 176870785 -25457562 - L2 LINE L2 -226 3046 2932 282 307 152 30 chr4 176870873 176871104 -25457243 - L2 LINE L2 -500 2814 2556 332 264 0 36 chr4 176871698 176871808 -25456539 - L1MC4 LINE L1 -1333 6709 6604 563 276 69 61 chr4 176872405 176872651 -25455696 + Charlie2 DNA MER1_type 77 324 -2538 565 240 143 14 chr4 176872660 176872947 -25455400 + Charlie2 DNA MER1_type 1864 2187 -675 222 105 0 0 chr4 176872968 176873006 -25455341 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 3445 247 76 25 chr4 176873008 176874625 -25453722 - L1MDb LINE L1 -3974 2432 754 404 99 19 62 chr4 176875182 176875344 -25453003 + (TA)n Simple_repeat Simple_repeat 1 155 0 213 365 24 0 chr4 176875627 176875712 -25452635 + L2 LINE L2 3139 3225 -47 2425 88 3 0 chr4 176876013 176876319 -25452028 + AluSg SINE Alu 1 307 -3 3753 176 82 51 chr4 176876799 176878648 -25449699 + L1MCa LINE L1 28 1966 -4460 28 61 0 0 chr4 176879014 176879063 -25449284 + AT_rich Low_complexity Low_complexity 1 49 0 21 57 0 0 chr4 176879180 176879215 -25449132 + AT_rich Low_complexity Low_complexity 1 35 0 266 266 50 90 chr4 176879377 176879669 -25448678 + L1ME2 LINE L1 5877 6158 -12 1492 188 11 118 chr4 176879753 176880217 -25448130 - MLT2D LTR ERVL 0 414 1 24 67 0 0 chr4 176880232 176880277 -25448070 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr4 176880697 176880718 -25447629 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 176881289 176881314 -25447033 + AT_rich Low_complexity Low_complexity 1 25 0 244 263 50 61 chr4 176881681 176881780 -25446567 + MER5A DNA MER1_type 7 104 -85 231 238 113 25 chr4 176881715 176881795 -25446552 - MER5A DNA MER1_type -30 159 73 * 654 13 0 0 chr4 176882092 176882167 -25446180 + (GA)n Simple_repeat Simple_repeat 2 76 0 538 325 57 24 chr4 176882173 176882419 -25445928 - LTR33 LTR ERVL -237 284 31 219 69 0 0 chr4 176882533 176882562 -25445785 + (GA)n Simple_repeat Simple_repeat 1 29 0 1157 199 34 34 chr4 176883230 176883551 -25444796 + LTR37A LTR ERV1 82 402 -24 1537 199 0 45 chr4 176884580 176884891 -25443456 + AluJb SINE Alu 1 297 -15 225 0 0 0 chr4 176886478 176886503 -25441844 + (TA)n Simple_repeat Simple_repeat 2 26 0 399 283 92 36 chr4 176886980 176887337 -25441010 + HAL1 LINE L1 1293 1669 -838 369 233 62 31 chr4 176888018 176888147 -25440200 + LTR30 LTR ERV1 516 648 -74 231 330 21 0 chr4 176888545 176888639 -25439708 - MIR SINE MIR -83 125 30 610 277 57 21 chr4 176889467 176889799 -25438548 - L1M4 LINE L1 -3492 2654 2311 582 221 36 21 chr4 176890317 176890457 -25437890 - L2 LINE L2 -4 3309 3168 5316 180 62 8 chr4 176890468 176891654 -25436693 - L1 LINE L1 -1829 4317 3068 183 42 0 0 chr4 176891675 176891699 -25436648 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 280 138 0 62 chr4 176891705 176891770 -25436577 - L1PA16 LINE L1 -9 6157 6097 579 96 32 0 chr4 176891921 176892015 -25436332 - L1PB1 LINE L1 -3 6148 6052 310 114 4 0 chr4 176892015 176892072 -25436275 + L1P5 LINE L1 5643 5700 -454 466 247 0 0 chr4 176892448 176892545 -25435802 - Tigger7 DNA MER2_type -1 2490 2394 * 1051 258 47 4 chr4 176892544 176892800 -25435547 - Tigger7 DNA MER2_type -2220 267 1 2029 84 0 8 chr4 176893266 176893528 -25434819 + AluY SINE Alu 40 299 -12 2108 112 10 3 chr4 176893744 176894039 -25434308 + AluSg SINE Alu 1 297 -13 33 56 0 0 chr4 176894195 176894249 -25434098 + AT_rich Low_complexity Low_complexity 1 54 0 3773 226 9 36 chr4 176894745 176895790 -25432557 + L1P LINE L1 4333 5348 -798 386 218 17 92 chr4 176895896 176896070 -25432277 - MER92B LTR ERV1 -202 434 274 1960 170 6 117 chr4 176896122 176896610 -25431737 + MER31A LTR ERV1 33 485 0 1034 196 25 55 chr4 176896615 176896850 -25431497 - MER92B LTR ERV1 -408 228 1 23 0 0 0 chr4 176896911 176896934 -25431413 + AT_rich Low_complexity Low_complexity 1 23 0 300 272 78 44 chr4 176897014 176897194 -25431153 - MIR SINE MIR -11 251 66 2498 232 101 39 chr4 176897245 176897784 -25430563 - MER21B LTR ERV1 -11 852 249 2264 51 7 34 chr4 176897784 176898080 -25430267 - AluY SINE Alu -12 299 12 2498 232 101 39 chr4 176898080 176898326 -25430021 - MER21B LTR ERV1 -614 249 19 3651 171 28 42 chr4 176898369 176899090 -25429257 - MER50 LTR ERV1 -23 711 1 862 234 114 88 chr4 176899408 176899943 -25428404 - MER34C LTR ERV1 -15 570 22 211 315 43 22 chr4 176901196 176901288 -25427059 - L2 LINE L2 0 3313 3220 201 240 20 0 chr4 176901328 176901378 -25426969 + (TGGA)n Simple_repeat Simple_repeat 4 54 0 11979 48 7 2 chr4 176901972 176903483 -25424864 - L1PA5 LINE L1 -1055 5091 3574 7082 52 6 2 chr4 176903483 176904565 -25423782 + L1PA5 LINE L1 5070 6154 0 40 94 0 0 chr4 176904807 176904924 -25423423 + AT_rich Low_complexity Low_complexity 1 117 0 25 31 0 0 chr4 176905076 176905108 -25423239 + AT_rich Low_complexity Low_complexity 1 32 0 5019 127 36 5 chr4 176906698 176907528 -25420819 + L1MA5A LINE L1 5441 6296 -1 203 220 20 0 chr4 176907658 176907708 -25420639 + (TATAA)n Simple_repeat Simple_repeat 4 54 0 1479 172 40 7 chr4 176907783 176908085 -25420262 - L1MC3 LINE L1 -8 7777 7466 420 130 0 0 chr4 176908087 176908156 -25420191 + (TTCC)n Simple_repeat Simple_repeat 1 69 0 1411 191 14 49 chr4 176908156 176908444 -25419903 - AluJb SINE Alu -21 291 14 374 208 13 0 chr4 176908456 176908533 -25419814 - L1MC3 LINE L1 -309 7476 7399 849 159 0 55 chr4 176908551 176908714 -25419633 - THE1C-int LTR MaLR -190 1390 1237 7178 90 10 43 chr4 176908714 176909807 -25418540 + MER11C LTR ERVK 1 1057 -14 7005 143 68 8 chr4 176909826 176910995 -25417352 - THE1C-int LTR MaLR -340 1240 1 1502 145 74 84 chr4 176910995 176911374 -25416973 - THE1C LTR MaLR 0 375 1 608 233 60 87 chr4 176911374 176911640 -25416707 - L1MC3 LINE L1 -774 7011 6753 231 351 44 0 chr4 176911881 176911995 -25416352 - L1ME LINE L1 -472 5649 5531 330 216 11 22 chr4 176912241 176912422 -25415925 + (TA)n Simple_repeat Simple_repeat 2 180 0 32 75 0 0 chr4 176912707 176912774 -25415573 + AT_rich Low_complexity Low_complexity 1 67 0 28 48 0 0 chr4 176912993 176913035 -25415312 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr4 176913069 176913090 -25415257 + AT_rich Low_complexity Low_complexity 1 21 0 5464 109 14 5 chr4 176913090 176913493 -25414854 - L1PA13 LINE L1 -4 6810 6412 2202 130 11 8 chr4 176913493 176913847 -25414500 - THE1A LTR MaLR 0 355 1 10928 114 12 3 chr4 176913847 176915412 -25412935 - THE1A-int LTR MaLR 0 1580 1 2205 124 32 11 chr4 176915412 176915760 -25412587 - THE1A LTR MaLR 0 355 1 5464 109 14 5 chr4 176915760 176916852 -25411495 - L1PA13 LINE L1 -401 6413 5284 12029 219 56 10 chr4 176916857 176917681 -25410666 - L1PA13 LINE L1 -2163 4634 3849 2139 138 34 0 chr4 176917681 176918030 -25410317 + THE1B LTR MaLR 2 362 -2 12029 219 56 10 chr4 176918030 176921509 -25406838 - L1PA13 LINE L1 -2948 3849 1 1564 239 31 18 chr4 176921565 176921954 -25406393 - MLT1E2 LTR MaLR 0 626 233 2186 90 3 0 chr4 176921963 176922253 -25406094 - AluY SINE Alu 0 311 21 227 158 0 0 chr4 176922374 176922412 -25405935 - MLT1E2 LTR MaLR -489 135 98 261 0 0 0 chr4 176922574 176922603 -25405744 + (CA)n Simple_repeat Simple_repeat 1 29 0 1523 174 125 20 chr4 176922619 176922924 -25405423 + MER1B DNA MER1_type 1 337 0 426 20 0 0 chr4 176923155 176923206 -25405141 + (TC)n Simple_repeat Simple_repeat 2 52 0 42 20 0 0 chr4 176925262 176925311 -25403036 + AT_rich Low_complexity Low_complexity 1 49 0 257 303 98 23 chr4 176925456 176925895 -25402452 - L1M4 LINE L1 -2889 3257 2786 278 295 18 45 chr4 176926225 176926337 -25402010 + MER5A DNA MER1_type 47 155 -34 630 383 111 24 chr4 176926375 176927051 -25401296 + L2 LINE L2 2169 2903 -411 275 283 0 80 chr4 176927290 176927370 -25400977 + L2 LINE L2 3206 3276 -37 255 61 0 0 chr4 176927370 176927403 -25400944 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 275 283 0 80 chr4 176927403 176927435 -25400912 + L2 LINE L2 3276 3309 -4 201 195 0 0 chr4 176927585 176927626 -25400721 + (TA)n Simple_repeat Simple_repeat 2 42 0 355 340 121 38 chr4 176927882 176928247 -25400100 - L1ME LINE L1 -437 5684 5290 246 32 0 0 chr4 176929814 176929845 -25398502 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 547 280 273 14 chr4 176930018 176930443 -25397904 + L2 LINE L2 1308 1842 -1472 446 291 101 10 chr4 176930451 176930650 -25397697 + LTR52 LTR ERVL 48 264 -157 730 313 43 18 chr4 176930711 176930989 -25397358 + L2 LINE L2 2023 2307 -1007 6202 141 52 42 chr4 176930999 176931654 -25396693 - Tigger3b DNA MER2_type -1799 1229 557 2133 105 24 3 chr4 176931654 176931950 -25396397 + AluSp SINE Alu 1 302 -11 6202 141 52 42 chr4 176931950 176932497 -25395850 - Tigger3b DNA MER2_type -2471 557 16 1027 276 101 6 chr4 176932529 176932855 -25395492 + L2 LINE L2 2180 2536 -778 1107 254 65 63 chr4 176932855 176933505 -25394842 - MER69 DNA AcHobo -13 2513 1863 1076 255 53 0 chr4 176933508 176933810 -25394537 - MER69 DNA AcHobo -400 826 509 351 221 12 35 chr4 176933893 176933979 -25394368 - MER69 DNA AcHobo -93 84 1 751 301 144 17 chr4 176933991 176934560 -25393787 + L2 LINE L2 2537 3180 -133 212 292 0 31 chr4 176935615 176935680 -25392667 + L2 LINE L2 3250 3312 -1 299 324 57 43 chr4 176936248 176936736 -25391611 - HAL1b LINE L1 -807 541 47 6790 130 26 12 chr4 176936859 176938278 -25390069 - L1MA1 LINE L1 -4 7717 6274 5836 213 47 20 chr4 176938277 176939802 -25388545 - L1MA1 LINE L1 -2393 5172 3606 * 8445 205 149 9 chr4 176939779 176941709 -25386638 - L1MA1 LINE L1 -5351 2214 14 587 259 119 7 chr4 176942611 176942904 -25385443 - MER114 LTR ERV -322 326 1 414 338 52 63 chr4 176943329 176943598 -25384749 - L2 LINE L2 -2336 978 713 324 309 166 11 chr4 176944043 176944218 -25384129 - MIR SINE MIR -12 250 49 25 31 0 0 chr4 176944285 176944317 -25384030 + AT_rich Low_complexity Low_complexity 1 32 0 207 324 0 15 chr4 176944873 176944941 -25383406 + L3 LINE CR1 1384 1450 -127 1289 304 150 17 chr4 176945712 176946157 -25382190 + L2 LINE L2 1181 1566 -1748 1570 156 55 89 chr4 176946157 176946366 -25381981 - MLT1B LTR MaLR 0 390 200 1913 145 0 7 chr4 176946366 176946662 -25381685 - AluSq SINE Alu -19 294 1 1570 156 55 89 chr4 176946662 176946856 -25381491 - MLT1B LTR MaLR -190 200 1 1289 304 150 17 chr4 176946856 176947098 -25381249 + L2 LINE L2 1566 1959 -1355 414 134 0 0 chr4 176947099 176947166 -25381181 - MLT1B LTR MaLR -2 388 322 6414 146 52 14 chr4 176948091 176949275 -25379072 + Tigger3b DNA MER2_type 3 1231 0 1274 201 66 28 chr4 176949281 176949732 -25378615 - L1M4 LINE L1 -533 6139 5667 2221 104 0 7 chr4 176949732 176950031 -25378316 - AluSg SINE Alu -13 297 1 1274 201 66 28 chr4 176950031 176950097 -25378250 - L1M4 LINE L1 -1005 5667 5605 229 176 0 0 chr4 176950147 176950198 -25378149 - L1MC4 LINE L1 -1340 6702 6652 3525 137 40 3 chr4 176950225 176950818 -25377529 + L1PA16 LINE L1 5263 5877 -289 1895 250 70 12 chr4 176950803 176951960 -25376387 - L1M4 LINE L1 -3207 3437 2213 * 466 229 8 0 chr4 176951981 176952103 -25376244 - L1M4 LINE L1 -4551 2095 1973 * 1816 116 40 20 chr4 176952101 176952216 -25376131 + L1PB1 LINE L1 5666 5777 -374 408 40 0 0 chr4 176952216 176952266 -25376081 + (TA)n Simple_repeat Simple_repeat 2 51 0 1816 116 40 20 chr4 176952266 176952452 -25375895 + L1PB1 LINE L1 5777 5973 -178 6562 67 6 43 chr4 176952454 176953805 -25374542 + L1PA7 LINE L1 4832 6153 -1 1059 134 5 26 chr4 176953854 176954048 -25374299 + L1PB1 LINE L1 5959 6148 -3 31 0 0 0 chr4 176954048 176954079 -25374268 + AT_rich Low_complexity Low_complexity 1 31 0 2432 257 43 35 chr4 176954143 176955122 -25373225 - L1M4 LINE L1 -4656 1990 1004 1364 262 94 48 chr4 176955126 176955691 -25372656 - L1M4 LINE L1 -5944 598 8 688 138 39 23 chr4 176955806 176955936 -25372411 + AluY SINE Alu 1 132 -179 2281 69 0 7 chr4 176956137 176956428 -25371919 + AluY SINE Alu 7 295 -16 25 65 0 0 chr4 176957832 176957878 -25370469 + AT_rich Low_complexity Low_complexity 1 46 0 7820 189 16 40 chr4 176958037 176960231 -25368116 - L1PB4 LINE L1 -2 6154 4046 5169 99 4 1 chr4 176960231 176960958 -25367389 - L1PA8 LINE L1 -6 6166 5438 7820 189 16 40 chr4 176960958 176961634 -25366713 - L1PB4 LINE L1 -2110 4046 3355 24 0 0 0 chr4 176962070 176962094 -25366253 + AT_rich Low_complexity Low_complexity 1 24 0 435 337 24 12 chr4 176963699 176963868 -25364479 - MIR3 SINE MIR -1 207 37 2688 216 25 31 chr4 176963894 176964532 -25363815 + Tigger6b DNA MER2_type 1 634 -963 1030 211 24 0 chr4 176964532 176964740 -25363607 + MLT1D LTR MaLR 1 213 -292 1271 240 3 23 chr4 176964806 176965110 -25363237 + MLT1D LTR MaLR 208 505 0 2144 214 93 39 chr4 176965175 176965795 -25362552 + Tigger6b DNA MER2_type 944 1597 0 476 296 96 17 chr4 176965801 176966031 -25362316 - L1ME LINE L1 -367 5795 5548 23 0 0 29 chr4 176966031 176966049 -25362298 + AT_rich Low_complexity Low_complexity 1 19 -14 1872 132 75 35 chr4 176966049 176966397 -25361950 - THE1B LTR MaLR -2 362 1 23 0 0 29 chr4 176966397 176966412 -25361935 + AT_rich Low_complexity Low_complexity 19 33 0 247 290 24 24 chr4 176966459 176966583 -25361764 - L1ME LINE L1 -629 5535 5412 375 278 58 75 chr4 176966629 176967093 -25361254 - L1ME LINE L1 -816 5330 4875 225 252 0 0 chr4 176967584 176967687 -25360660 + (TG)n Simple_repeat Simple_repeat 2 104 0 1087 321 108 15 chr4 176967783 176968716 -25359631 + Charlie7 DNA MER1_type 53 1072 -1540 198 191 0 0 chr4 176968740 176968782 -25359565 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 249 195 24 85 chr4 176968800 176968882 -25359465 - L1MCa LINE L1 -4343 2083 2007 46 61 0 10 chr4 176969846 176969920 -25358427 + AT_rich Low_complexity Low_complexity 1 75 -23 2085 121 3 16 chr4 176969920 176970227 -25358120 - AluSx SINE Alu -9 303 1 46 61 0 10 chr4 176970227 176970251 -25358096 + AT_rich Low_complexity Low_complexity 75 98 0 190 73 73 18 chr4 176971687 176971742 -25356605 + (TA)n Simple_repeat Simple_repeat 1 58 0 1675 190 30 0 chr4 176971807 176972102 -25356245 - AluJb SINE Alu -8 304 1 5608 158 12 13 chr4 176972274 176973817 -25354530 - L1PB1 LINE L1 -1 6150 4600 * 15489 185 34 30 chr4 176973790 176977151 -25351196 - L1P LINE L1 -1022 5124 1750 460 283 116 6 chr4 176977873 176978046 -25350301 + MIR SINE MIR 71 262 0 24 32 0 0 chr4 176978661 176978692 -25349655 + AT_rich Low_complexity Low_complexity 1 31 0 9166 156 16 8 chr4 176979070 176980935 -25347412 + L1PA10 LINE L1 3718 5595 -573 2598 112 16 0 chr4 176981035 176981418 -25346929 + L1PA10 LINE L1 5776 6164 -4 276 313 77 16 chr4 176981590 176981836 -25346511 + L1ME LINE L1 4410 4670 -1476 1412 199 57 7 chr4 176982174 176982455 -25345892 + AluJb SINE Alu 1 295 -17 277 211 14 70 chr4 176982537 176982679 -25345668 + L1ME LINE L1 5174 5307 -839 239 240 48 29 chr4 176982705 176982809 -25345538 + L1ME LINE L1 5355 5460 -710 1288 204 8 12 chr4 176982923 176983178 -25345169 - AluJb SINE Alu -30 282 29 435 330 174 29 chr4 176983280 176983912 -25344435 + L2 LINE L2 2369 3174 -139 243 0 0 0 chr4 176983912 176983939 -25344408 + (TA)n Simple_repeat Simple_repeat 2 28 0 435 330 174 29 chr4 176983939 176984103 -25344244 + L2 LINE L2 3174 3313 0 345 24 0 0 chr4 176985118 176985160 -25343187 + (TC)n Simple_repeat Simple_repeat 1 42 0 279 0 0 0 chr4 176985159 176985190 -25343157 + (CA)n Simple_repeat Simple_repeat 1 31 0 * 1006 331 97 12 chr4 176985252 176985781 -25342566 - L2 LINE L2 -170 3143 2548 1674 186 36 19 chr4 176985781 176986141 -25342206 + MER47A DNA MER2_type 1 366 0 1006 331 97 12 chr4 176986141 176986186 -25342161 - L2 LINE L2 -765 2548 2508 813 214 20 63 chr4 176987557 176987794 -25340553 + MLT1D LTR MaLR 318 505 0 2854 189 37 5 chr4 176988610 176989172 -25339175 + LTR22 LTR ERVK 1 580 0 7822 112 30 15 chr4 176991074 176992356 -25335991 - MER4-int LTR ERV1 -1460 5138 3837 3612 146 77 39 chr4 176992350 176993265 -25335082 - MER4-int LTR ERV1 -2912 3686 2738 * 1170 161 93 4 chr4 176993266 176993502 -25334845 + LTR8 LTR ERV1 1 257 -434 6846 124 59 14 chr4 176993502 176995063 -25333284 - MER4-int LTR ERV1 -4103 2495 836 2903 136 84 143 chr4 176995062 176996418 -25331929 + pTR5 LTR ERV1 6 714 0 * 282 102 136 0 chr4 176996439 176996498 -25331849 - MER4-int LTR ERV1 -5845 753 687 895 131 36 4 chr4 176996514 176996735 -25331612 - MER4-int LTR ERV1 -5784 814 508 1748 146 6 22 chr4 176996865 176997214 -25331133 - MER4A LTR ERV1 -1 663 262 591 111 0 93 chr4 176997215 176997323 -25331024 - MER4A LTR ERV1 -566 98 1 26 0 0 0 chr4 176997429 176997455 -25330892 + AT_rich Low_complexity Low_complexity 1 26 0 808 315 64 39 chr4 176997605 176998087 -25330260 + L2 LINE L2 2164 2657 -657 1542 180 9 41 chr4 176999795 177000111 -25328236 + AluJo SINE Alu 3 308 -4 306 345 7 40 chr4 177000243 177000391 -25327956 + MIR SINE MIR 12 154 -108 494 315 54 22 chr4 177000713 177000935 -25327412 - MIR SINE MIR -2 260 32 1912 67 8 12 chr4 177001360 177001613 -25326734 - AluY SINE Alu -1 310 59 205 156 0 0 chr4 177001723 177001755 -25326592 + (CA)n Simple_repeat Simple_repeat 1 32 0 1687 259 31 20 chr4 177001825 177002273 -25326074 + L1MDa LINE L1 27 479 -6061 1391 156 291 8 chr4 177002273 177002651 -25325696 - MER31A LTR ERV1 0 485 1 4938 246 86 15 chr4 177002681 177004176 -25324171 + L1MDa LINE L1 500 2100 -4440 3711 173 29 22 chr4 177004184 177005552 -25322795 + L1MA8 LINE L1 4653 6029 -262 461 236 131 75 chr4 177005605 177005804 -25322543 + MER63A DNA MER1_type 1 210 0 24 77 0 0 chr4 177005891 177005943 -25322404 + AT_rich Low_complexity Low_complexity 1 52 0 2266 93 3 13 chr4 177006535 177006848 -25321499 + AluY SINE Alu 1 310 -1 207 100 0 0 chr4 177006848 177006878 -25321469 + (GGAGAA)n Simple_repeat Simple_repeat 4 33 0 189 74 0 0 chr4 177006919 177006946 -25321401 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr4 177007472 177007494 -25320853 + AT_rich Low_complexity Low_complexity 1 22 0 31 44 0 0 chr4 177007537 177007582 -25320765 + AT_rich Low_complexity Low_complexity 1 45 0 320 247 12 12 chr4 177007949 177008030 -25320317 + MER58B DNA MER1_type 261 341 0 330 261 128 21 chr4 177008263 177008451 -25319896 + L1MC/D LINE L1 5255 5462 -2346 348 246 37 45 chr4 177008524 177008658 -25319689 + MLT1G LTR MaLR 390 522 -68 4759 163 30 7 chr4 177008662 177009503 -25318844 - Tigger4(Zombi) DNA MER2_type -1 2730 1871 914 152 0 7 chr4 177009501 177009646 -25318701 - Tigger4(Zombi) DNA MER2_type -2586 145 2 * 21 0 0 0 chr4 177009750 177009771 -25318576 + AT_rich Low_complexity Low_complexity 1 21 0 1061 284 132 20 chr4 177011508 177012001 -25316346 + MLT1H1 LTR MaLR 1 548 -7 1146 323 117 18 chr4 177012896 177013453 -25314894 - MLT2E LTR ERVL -16 612 1 1637 98 0 5 chr4 177015047 177015271 -25313076 + AluSg/x SINE Alu 86 308 -4 240 35 0 0 chr4 177016116 177016145 -25312202 + (TG)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr4 177016842 177016866 -25311481 + AT_rich Low_complexity Low_complexity 1 24 0 200 326 35 12 chr4 177017008 177017094 -25311253 - L2 LINE L2 -911 2403 2316 718 270 75 5 chr4 177017202 177017402 -25310945 + L2 LINE L2 3098 3311 -2 285 98 0 0 chr4 177017539 177017565 -25310782 + (TG)n Simple_repeat Simple_repeat 1 67 0 285 98 0 0 chr4 177017565 177017606 -25310741 + (TG)n Simple_repeat Simple_repeat 2 42 0 418 152 0 76 chr4 177018087 177018179 -25310168 + MER2 DNA MER2_type 187 271 -74 1406 194 21 25 chr4 177018391 177018675 -25309672 + MER2 DNA MER2_type 6 288 -57 463 136 0 0 chr4 177018724 177018790 -25309557 + MER2 DNA MER2_type 280 345 0 221 83 28 0 chr4 177018824 177018860 -25309487 + (CA)n Simple_repeat Simple_repeat 2 38 0 468 297 13 54 chr4 177018887 177019126 -25309221 - L1ME3 LINE L1 -34 6128 5900 1780 281 126 11 chr4 177019147 177019930 -25308417 - L1ME1 LINE L1 -12 6949 6077 606 255 16 47 chr4 177019943 177020135 -25308212 - MLT1A1 LTR MaLR -16 358 173 767 189 61 28 chr4 177020167 177020199 -25308148 - MLT1A1 LTR MaLR -176 189 160 189 0 0 0 chr4 177020199 177020220 -25308127 + (GA)n Simple_repeat Simple_repeat 2 22 0 767 189 61 28 chr4 177020220 177020367 -25307980 - MLT1A1 LTR MaLR -205 160 4 322 268 157 59 chr4 177020369 177020828 -25307519 - L1ME1 LINE L1 -860 6081 5578 * 1554 295 95 57 chr4 177020818 177021461 -25306886 - L1ME1 LINE L1 -4753 2188 1571 2068 127 0 32 chr4 177021461 177021776 -25306571 - AluSx SINE Alu -1 311 7 1739 138 17 17 chr4 177021782 177022071 -25306276 - AluSx SINE Alu -23 289 1 1554 295 95 57 chr4 177022071 177022859 -25305488 - L1ME1 LINE L1 -5374 1567 666 2210 104 3 7 chr4 177022859 177023158 -25305189 + AluSp SINE Alu 1 298 -15 1554 295 95 57 chr4 177023158 177023496 -25304851 - L1ME1 LINE L1 -6275 666 342 2230 232 28 89 chr4 177023497 177024285 -25304062 + LTR68 LTR ERV1 1 740 0 587 292 50 31 chr4 177024285 177024607 -25303740 - L1ME1 LINE L1 -6078 345 18 * 1017 273 75 31 chr4 177024598 177025052 -25303295 - L1ME3 LINE L1 -247 5919 5446 324 276 32 65 chr4 177026964 177027087 -25301260 - L2 LINE L2 -45 3268 3150 278 50 25 0 chr4 177027774 177027814 -25300533 + (TG)n Simple_repeat Simple_repeat 2 42 0 1553 130 44 80 chr4 177028993 177029331 -25299016 - L1MA4A LINE L1 -4 7361 7036 981 84 8 0 chr4 177029340 177029471 -25298876 - AluY SINE Alu -179 132 1 3916 162 10 27 chr4 177029471 177030239 -25298108 - L1MA4A LINE L1 -317 7048 6294 * 8726 201 28 24 chr4 177030236 177031732 -25296615 - L1MA4A LINE L1 -1481 5727 4217 2198 144 22 11 chr4 177031732 177032092 -25296255 + THE1B LTR MaLR 1 364 0 8726 201 28 24 chr4 177032092 177032712 -25295635 - L1MA4A LINE L1 -2991 4217 3601 2120 242 62 96 chr4 177032705 177033909 -25294438 - L1MA4A LINE L1 -5351 1858 514 * 203 243 143 0 chr4 177034588 177034658 -25293689 + MIR SINE MIR 48 127 -135 2021 142 73 14 chr4 177034694 177035038 -25293309 - THE1B LTR MaLR 0 364 1 624 134 81 27 chr4 177035197 177035346 -25293001 + L1MA7 LINE L1 6129 6285 -6 1632 140 68 34 chr4 177035402 177035695 -25292652 - AluSx SINE Alu -9 303 1 210 213 21 0 chr4 177035720 177035767 -25292580 + (TA)n Simple_repeat Simple_repeat 2 49 0 1385 326 72 95 chr4 177038217 177038365 -25289982 + L2 LINE L2 1325 1475 -1839 681 191 29 17 chr4 177038365 177038538 -25289809 - L1MB3 LINE L1 -3 6180 6006 1385 326 72 95 chr4 177038538 177039612 -25288735 + L2 LINE L2 1475 2603 -711 483 196 10 0 chr4 177039612 177039714 -25288633 + L1MB3 LINE L1 6065 6167 -16 1385 326 72 95 chr4 177039714 177040063 -25288284 + L2 LINE L2 2603 2959 -355 21 57 0 0 chr4 177040745 177040780 -25287567 + AT_rich Low_complexity Low_complexity 1 35 0 209 151 19 0 chr4 177040815 177040868 -25287479 + (TA)n Simple_repeat Simple_repeat 1 54 0 674 122 0 0 chr4 177040879 177040977 -25287370 - AluS SINE Alu -214 99 2 582 175 71 16 chr4 177041993 177042119 -25286228 + FLAM_A SINE Alu 1 133 0 8821 72 0 3 chr4 177043392 177045326 -25283021 + L1PA7 LINE L1 4220 6150 -4 3391 132 35 2 chr4 177045365 177046316 -25282031 + L1P4 LINE L1 4823 5805 -363 898 100 115 0 chr4 177046416 177046546 -25281801 - THE1B LTR MaLR -219 145 1 227 329 95 19 chr4 177047132 177047290 -25281057 - L2 LINE L2 -2813 501 332 327 49 0 0 chr4 177047687 177047728 -25280619 + (CA)n Simple_repeat Simple_repeat 2 42 0 477 71 0 0 chr4 177047733 177047803 -25280544 + (GA)n Simple_repeat Simple_repeat 1 70 0 3894 99 0 0 chr4 177048318 177048852 -25279495 - THE1B-int LTR MaLR -1046 534 1 1909 105 7 34 chr4 177048852 177049146 -25279201 - THE1B LTR MaLR 0 364 79 21 82 0 0 chr4 177050255 177050304 -25278043 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 177050866 177050887 -25277460 + AT_rich Low_complexity Low_complexity 1 21 0 670 146 183 12 chr4 177051077 177051241 -25277106 + 7SK RNA RNA 2 193 0 259 267 100 33 chr4 177051246 177051426 -25276921 + L1MCc LINE L1 72 263 -6160 416 321 139 5 chr4 177051707 177051922 -25276425 + MIR SINE MIR 5 248 -14 24 0 0 0 chr4 177052292 177052316 -25276031 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr4 177052610 177052633 -25275714 + AT_rich Low_complexity Low_complexity 1 23 0 432 215 40 164 chr4 177054638 177054936 -25273411 + LTR38B LTR ERV1 1 261 -349 290 267 5 72 chr4 177055037 177055232 -25273115 + LTR38B LTR ERV1 429 610 0 207 69 0 0 chr4 177056032 177056061 -25272286 + (GA)n Simple_repeat Simple_repeat 2 30 0 7721 113 9 1 chr4 177056488 177057563 -25270784 + THE1B-int LTR MaLR 497 1580 0 2124 99 53 34 chr4 177057563 177057918 -25270429 + THE1B LTR MaLR 1 362 -2 429 259 9 9 chr4 177057938 177058050 -25270297 + L1MCc LINE L1 591 702 -6241 2294 267 68 22 chr4 177058053 177059004 -25269343 + L1M4 LINE L1 2686 3689 -2457 1983 136 10 7 chr4 177059004 177059306 -25269041 + AluSc SINE Alu 1 303 -6 2294 267 68 22 chr4 177059306 177059383 -25268964 + L1M4 LINE L1 3689 3761 -2385 5763 133 3 2 chr4 177059398 177060347 -25268000 - L1PA12 LINE L1 -4430 3154 2201 4485 169 26 17 chr4 177060354 177061125 -25267222 - L1PA12 LINE L1 -6802 779 2 280 336 47 13 chr4 177061450 177061599 -25266748 - MIR SINE MIR -6 256 103 933 236 75 61 chr4 177061678 177062038 -25266309 - MLT1A1 LTR MaLR 0 365 1 3882 186 30 31 chr4 177064084 177064855 -25263492 - MER52A LTR ERV1 0 1755 986 21 0 0 0 chr4 177065232 177065253 -25263094 + AT_rich Low_complexity Low_complexity 1 21 0 2231 95 7 0 chr4 177065706 177066000 -25262347 - AluSc SINE Alu -13 296 1 579 305 19 62 chr4 177067028 177067284 -25261063 + MIR SINE MIR 8 252 -10 257 354 10 10 chr4 177067352 177067451 -25260896 + L2 LINE L2 3214 3312 -1 264 242 0 0 chr4 177067467 177067529 -25260818 + (TTA)n Simple_repeat Simple_repeat 1 62 0 21 0 0 0 chr4 177067608 177067629 -25260718 + AT_rich Low_complexity Low_complexity 1 21 0 240 83 0 0 chr4 177067817 177067853 -25260494 - L1MC3 LINE L1 -27 7758 7723 754 138 0 0 chr4 177067853 177067962 -25260385 + THE1B LTR MaLR 1 109 -255 333 271 0 28 chr4 177068405 177068512 -25259835 - MLT1F1 LTR MaLR -443 124 21 843 194 101 20 chr4 177068512 177068760 -25259587 - L1MC3 LINE L1 -705 7080 6813 438 204 0 11 chr4 177069091 177069179 -25259168 + L1MD3 LINE L1 6854 6940 -1055 37 69 0 0 chr4 177070406 177070478 -25257869 + AT_rich Low_complexity Low_complexity 1 72 0 188 170 43 0 chr4 177071049 177071096 -25257251 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 25 51 0 0 chr4 177072799 177072838 -25255509 + AT_rich Low_complexity Low_complexity 1 39 0 782 322 120 24 chr4 177073949 177074098 -25254249 - L2 LINE L2 -405 2909 2776 222 37 0 0 chr4 177074098 177074125 -25254222 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1704 157 21 7 chr4 177074127 177074408 -25253939 - AluSx SINE Alu -15 297 13 782 322 120 24 chr4 177074408 177074796 -25253551 - L2 LINE L2 -538 2776 2317 370 309 94 7 chr4 177074799 177074948 -25253399 - MLT1J2 LTR MaLR -1 449 288 21 0 0 0 chr4 177075311 177075332 -25253015 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr4 177075972 177076007 -25252340 + AT_rich Low_complexity Low_complexity 1 35 0 201 39 0 0 chr4 177076627 177076653 -25251694 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 270 0 0 0 chr4 177076652 177076682 -25251665 + (GA)n Simple_repeat Simple_repeat 2 31 0 2299 98 3 0 chr4 177076741 177077036 -25251311 + AluSp SINE Alu 7 302 -11 3693 186 74 19 chr4 177077060 177077129 -25251218 + L1MC1 LINE L1 697 761 -5665 2444 108 8 0 chr4 177077129 177077481 -25250866 + THE1A LTR MaLR 1 355 0 3693 186 74 19 chr4 177077481 177078412 -25249935 + L1MC1 LINE L1 761 1848 -4578 1836 164 102 12 chr4 177078399 177078802 -25249545 + L1MA7 LINE L1 5850 6288 -3 * 21 36 0 0 chr4 177078802 177078830 -25249517 + AT_rich Low_complexity Low_complexity 1 28 0 3701 257 64 7 chr4 177078834 177080840 -25247507 + L1MC1 LINE L1 1824 4055 -2371 4501 188 13 16 chr4 177080840 177081772 -25246575 + L1MC1 LINE L1 5685 6613 0 2052 110 0 0 chr4 177081906 177082188 -25246159 - AluSx SINE Alu -30 282 1 215 335 161 13 chr4 177082646 177082801 -25245546 + MER5A DNA MER1_type 8 185 -4 309 26 0 0 chr4 177083331 177083369 -25244978 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 0 0 0 chr4 177083640 177083664 -25244683 + AT_rich Low_complexity Low_complexity 1 24 0 2554 103 8 10 chr4 177083664 177084051 -25244296 - L1PA10 LINE L1 -11 6157 5772 322 373 61 38 chr4 177085960 177086223 -25242124 - L2 LINE L2 -188 3084 2816 27 73 0 0 chr4 177086543 177086598 -25241749 + AT_rich Low_complexity Low_complexity 1 55 0 2351 154 52 0 chr4 177086662 177087065 -25241282 - MSTB LTR MaLR -2 424 1 28 0 0 0 chr4 177087209 177087237 -25241110 + AT_rich Low_complexity Low_complexity 1 28 0 2365 73 0 7 chr4 177087276 177087577 -25240770 + AluY SINE Alu 1 299 -12 2072 113 3 3 chr4 177088141 177088441 -25239906 - AluSc SINE Alu -9 300 1 1475 109 45 0 chr4 177088824 177089044 -25239303 + MER30 DNA MER1_type 1 230 0 233 200 0 0 chr4 177091228 177091273 -25237074 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 641 170 7 0 chr4 177091622 177091763 -25236584 + CT-rich Low_complexity Low_complexity 3 144 0 1723 205 20 87 chr4 177093957 177094446 -25233901 + MLT1C LTR MaLR 1 466 -1 1999 125 4 0 chr4 177094505 177094809 -25233538 + AluY SINE Alu 3 307 0 8694 26 3 0 chr4 177096932 177098731 -25229616 - L1PA3 LINE L1 -3 6152 4347 7185 35 0 0 chr4 177098731 177099587 -25228760 + L1PA3 LINE L1 3488 4343 -1803 468 35 0 0 chr4 177101084 177101142 -25227205 + (CA)n Simple_repeat Simple_repeat 1 58 0 384 22 0 0 chr4 177101862 177101907 -25226440 + (TG)n Simple_repeat Simple_repeat 2 46 0 24 32 0 0 chr4 177102294 177102325 -25226022 + AT_rich Low_complexity Low_complexity 1 31 0 367 146 10 125 chr4 177103311 177103407 -25224940 + L2 LINE L2 3221 3305 -8 777 290 75 33 chr4 177103668 177104306 -25224041 - L1M4 LINE L1 -3194 2952 2288 180 0 0 0 chr4 177104364 177104384 -25223963 + (TA)n Simple_repeat Simple_repeat 1 20 0 28 29 0 0 chr4 177104713 177104748 -25223599 + AT_rich Low_complexity Low_complexity 1 35 0 200 237 0 17 chr4 177105278 177105337 -25223010 + T-rich Low_complexity Low_complexity 2 59 0 308 221 0 15 chr4 177106237 177106305 -25222042 + MER46C DNA MER2_type 83 149 -189 375 255 0 20 chr4 177107836 177107934 -25220413 + MIR SINE MIR 57 152 -110 219 146 0 0 chr4 177108422 177108463 -25219884 + (CATA)n Simple_repeat Simple_repeat 4 44 0 1893 116 0 0 chr4 177108560 177108819 -25219528 + AluSx SINE Alu 3 261 -51 1637 102 94 0 chr4 177108824 177109080 -25219267 - LTR9B LTR ERV1 -364 280 1 30 27 0 0 chr4 177109662 177109699 -25218648 + AT_rich Low_complexity Low_complexity 1 37 0 749 357 63 38 chr4 177110681 177111485 -25216862 - L2 LINE L2 -47 3266 2432 31 26 0 0 chr4 177111772 177111810 -25216537 + AT_rich Low_complexity Low_complexity 1 38 0 201 94 0 0 chr4 177112009 177112041 -25216306 + (TAAAA)n Simple_repeat Simple_repeat 1 32 0 2357 57 40 0 chr4 177112085 177112382 -25215965 - AluY SINE Alu -2 309 1 457 320 41 20 chr4 177112769 177113076 -25215271 - LTR16C LTR ERVL -3 488 140 1783 167 88 69 chr4 177113361 177113781 -25214566 + MSTA LTR MaLR 1 428 0 22 35 0 0 chr4 177114162 177114191 -25214156 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 177114433 177114454 -25213893 + AT_rich Low_complexity Low_complexity 1 21 0 1442 197 21 12 chr4 177114968 177115252 -25213095 + L1PA13 LINE L1 4415 4704 -1442 216 0 0 0 chr4 177115252 177115276 -25213071 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1442 197 21 12 chr4 177115276 177115321 -25213026 + L1PA13 LINE L1 4704 4747 -1399 5317 139 19 11 chr4 177115322 177116368 -25211979 + L1PA13 LINE L1 5109 6162 -1 22 70 0 0 chr4 177118294 177118337 -25210010 + AT_rich Low_complexity Low_complexity 1 43 0 1875 82 8 15 chr4 177118825 177119093 -25209254 + AluY SINE Alu 44 309 -2 524 288 47 30 chr4 177119296 177119529 -25208818 + L3b LINE CR1 1231 1467 -116 21 0 0 0 chr4 177119594 177119615 -25208732 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 177120361 177120390 -25207957 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr4 177121900 177121924 -25206423 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 177122210 177122231 -25206116 + AT_rich Low_complexity Low_complexity 1 21 0 248 358 102 27 chr4 177122545 177122732 -25205615 + L2 LINE L2 352 552 -2762 1309 231 27 35 chr4 177123104 177123472 -25204875 + MLT1A1 LTR MaLR 1 365 0 734 215 164 70 chr4 177123625 177123937 -25204410 - LTR41 LTR ERVL -21 752 412 2240 150 8 14 chr4 177124236 177124602 -25203745 + THE1B LTR MaLR 1 364 0 1946 168 127 10 chr4 177124651 177125062 -25203285 - MLT1C LTR MaLR 0 467 9 253 254 14 0 chr4 177125125 177125196 -25203151 + (TA)n Simple_repeat Simple_repeat 1 72 0 252 287 42 18 chr4 177125205 177125372 -25202975 - L1ME LINE L1 -238 5883 5713 223 260 0 0 chr4 177125389 177125439 -25202908 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 413 241 76 62 chr4 177125542 177125833 -25202514 + L1ME3A LINE L1 4483 4777 -1369 3228 129 12 20 chr4 177126051 177126562 -25201785 + MER1A DNA MER1_type 23 529 0 484 280 115 13 chr4 177126562 177126944 -25201403 + L1ME3A LINE L1 4972 5392 -754 418 295 87 37 chr4 177127027 177127354 -25200993 + L1ME3A LINE L1 5483 5827 -343 783 263 28 37 chr4 177129029 177129246 -25199101 + MER58A DNA MER1_type 10 224 0 27 29 0 0 chr4 177129512 177129546 -25198801 + AT_rich Low_complexity Low_complexity 1 34 0 2500 37 7 0 chr4 177130055 177130354 -25197993 + AluY SINE Alu 1 301 -10 1143 183 78 81 chr4 177130833 177131193 -25197154 - MLT1A1 LTR MaLR -5 360 2 1197 221 62 22 chr4 177132073 177132349 -25195998 - AluJo SINE Alu -15 287 1 259 367 84 13 chr4 177132551 177132777 -25195570 + L2 LINE L2 2280 2521 -793 2126 162 0 29 chr4 177132838 177133214 -25195133 + MLT1A1 LTR MaLR 1 365 0 4131 181 19 20 chr4 177133593 177134387 -25193960 + MER54B LTR ERVL 1 793 0 31 26 0 0 chr4 177134410 177134448 -25193899 + AT_rich Low_complexity Low_complexity 1 38 0 183 292 56 11 chr4 177134460 177134549 -25193798 - L2 LINE L2 -50 3263 3171 979 186 154 8 chr4 177134620 177134873 -25193474 + MLT2C2 LTR ERVL 1 290 -174 445 297 23 59 chr4 177135855 177135966 -25192381 - LTR16C LTR ERVL 0 491 378 1890 101 8 11 chr4 177135966 177136234 -25192113 + AluSc SINE Alu 37 303 -6 445 297 23 59 chr4 177136234 177136378 -25191969 - LTR16C LTR ERVL -113 378 245 7383 178 31 8 chr4 177136421 177137735 -25190612 + Ricksha_c DNA DNA 27 1371 -675 2450 151 6 52 chr4 177137735 177138220 -25190127 + L1MA5 LINE L1 5695 6157 -143 288 294 34 7 chr4 177138358 177138504 -25189843 - L1M4 LINE L1 -1819 4327 4178 263 263 0 0 chr4 177138545 177138602 -25189745 - MLT1J2 LTR MaLR -268 182 126 32 26 0 0 chr4 177138879 177138918 -25189429 + AT_rich Low_complexity Low_complexity 1 39 0 245 241 76 0 chr4 177139759 177139838 -25188509 - L1MC4 LINE L1 -1344 6698 6614 204 267 0 0 chr4 177139838 177139883 -25188464 + (TA)n Simple_repeat Simple_repeat 1 45 0 215 274 0 0 chr4 177140991 177141053 -25187294 + GA-rich Low_complexity Low_complexity 1 62 0 981 273 144 53 chr4 177141942 177142035 -25186312 - HAL1 LINE L1 0 2507 2424 2160 173 85 40 chr4 177142035 177142555 -25185792 + MER67A LTR ERV1 1 543 0 981 273 144 53 chr4 177142555 177142911 -25185436 - HAL1 LINE L1 -83 2424 2102 2131 115 3 10 chr4 177142911 177143216 -25185131 - AluSg SINE Alu -7 303 1 981 273 144 53 chr4 177143216 177143656 -25184691 - HAL1 LINE L1 -405 2102 1536 236 302 127 0 chr4 177143647 177143773 -25184574 - L1MCc LINE L1 -5990 433 292 * 339 85 0 0 chr4 177143773 177143820 -25184527 + (CA)n Simple_repeat Simple_repeat 2 48 0 185 159 23 0 chr4 177143820 177143864 -25184483 + (TA)n Simple_repeat Simple_repeat 1 45 0 390 143 33 0 chr4 177143893 177143984 -25184363 + (TA)n Simple_repeat Simple_repeat 1 94 0 5647 237 48 37 chr4 177194005 177195589 -25132758 - L1MDa LINE L1 -4918 1622 21 28 29 0 0 chr4 177195843 177195878 -25132469 + AT_rich Low_complexity Low_complexity 1 35 0 1743 162 40 7 chr4 177196245 177196547 -25131800 + AluSx SINE Alu 1 312 0 389 329 50 7 chr4 177197255 177197478 -25130869 - L1MEc LINE L1 -5065 1140 939 23 33 0 0 chr4 177197657 177197687 -25130660 + AT_rich Low_complexity Low_complexity 1 30 0 267 31 0 0 chr4 177197951 177197983 -25130364 + (CA)n Simple_repeat Simple_repeat 1 32 0 1637 216 72 59 chr4 177198828 177199370 -25128977 - MER77 LTR ERV1 -4 601 53 391 285 108 38 chr4 177199485 177199902 -25128445 - HAL1b LINE L1 -709 639 194 264 59 0 0 chr4 177200449 177200483 -25127864 + (TG)n Simple_repeat Simple_repeat 1 34 0 285 289 52 80 chr4 177200856 177201072 -25127275 - L1ME3 LINE L1 -26 6136 5928 352 335 66 31 chr4 177201335 177201622 -25126725 - L1MEc LINE L1 -6031 365 69 2083 149 91 8 chr4 177201758 177202153 -25126194 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr4 177203470 177203491 -25124856 + AT_rich Low_complexity Low_complexity 1 21 0 1975 115 3 62 chr4 177204702 177205024 -25123323 - AluSq SINE Alu -10 303 1 2551 182 114 23 chr4 177205664 177206313 -25122034 - MER67C LTR ERV1 0 710 3 295 317 54 78 chr4 177208122 177208327 -25120020 - MIR SINE MIR -31 231 32 29 47 0 0 chr4 177208423 177208466 -25119881 + AT_rich Low_complexity Low_complexity 1 43 0 292 311 92 0 chr4 177208852 177208971 -25119376 - MLT1I LTR MaLR -236 173 44 331 212 0 0 chr4 177209079 177209145 -25119202 - Tigger1 DNA MER2_type -2 2416 2351 234 0 0 0 chr4 177209158 177209184 -25119163 + (TG)n Simple_repeat Simple_repeat 1 26 0 234 315 110 8 chr4 177209701 177209828 -25118519 + MIR SINE MIR 9 148 -114 902 180 85 10 chr4 177209828 177210028 -25118319 - Tigger1 DNA MER2_type 0 2418 2204 884 216 22 17 chr4 177209996 177210177 -25118170 - Tigger1 DNA MER2_type -2236 182 1 * 725 365 66 40 chr4 177210181 177210319 -25118028 - L2 LINE L2 -574 2740 2607 2470 186 148 20 chr4 177210319 177211017 -25117330 - LTR48 LTR ERV1 0 787 1 725 365 66 40 chr4 177211017 177211577 -25116770 - L2 LINE L2 -707 2607 2024 258 32 0 0 chr4 177212849 177212880 -25115467 + (TG)n Simple_repeat Simple_repeat 1 31 0 23 0 0 0 chr4 177213310 177213333 -25115014 + AT_rich Low_complexity Low_complexity 1 23 0 1332 197 128 46 chr4 177213547 177213870 -25114477 - MSTD LTR MaLR 0 396 38 1919 138 7 0 chr4 177213870 177214160 -25114187 - AluSx SINE Alu -20 292 1 1332 197 128 46 chr4 177214160 177214202 -25114145 - MSTD LTR MaLR -358 38 1 580 312 115 16 chr4 177214371 177214624 -25113723 + MLT1I LTR MaLR 89 366 -43 28 0 0 0 chr4 177214673 177214701 -25113646 + AT_rich Low_complexity Low_complexity 1 28 0 1623 233 76 9 chr4 177214797 177215217 -25113130 - MER39 LTR ERV1 0 707 260 229 311 78 11 chr4 177215291 177215381 -25112966 - MLT1L LTR MaLR -517 98 3 335 305 46 36 chr4 177216214 177216516 -25111831 + L1MC/D LINE L1 4725 5029 -1117 1253 278 32 40 chr4 177216744 177217272 -25111075 + L1MC/D LINE L1 5263 5786 -2022 431 356 84 29 chr4 177217291 177217841 -25110506 + L2 LINE L2 2113 2692 -622 714 230 0 6 chr4 177218254 177218419 -25109928 - L1MC/D LINE L1 -712 5530 5367 * 904 274 2 44 chr4 177218410 177218815 -25109532 + L1M4 LINE L1 3364 3751 -2395 * 1337 268 11 55 chr4 177218812 177219289 -25109058 - L1ME2 LINE L1 -335 5898 5443 435 243 55 26 chr4 177219313 177219584 -25108763 - L1ME2 LINE L1 -4065 2331 1997 719 232 7 0 chr4 177219613 177219755 -25108592 - AluJo SINE Alu -129 183 41 433 291 192 47 chr4 177220852 177221233 -25107114 - MLT1J1 LTR MaLR 0 446 11 1818 194 31 16 chr4 177221388 177221770 -25106577 + MLT1B LTR MaLR 2 389 -1 1581 175 0 58 chr4 177221807 177222115 -25106232 - AluJb SINE Alu -21 291 2 471 289 63 0 chr4 177222922 177223064 -25105283 - MIR SINE MIR -110 152 2 1849 124 13 57 chr4 177223280 177223594 -25104753 + AluSp SINE Alu 1 300 -13 1582 153 17 0 chr4 177224231 177224518 -25103829 + L1MA8 LINE L1 6000 6291 0 2051 134 3 0 chr4 177224862 177225153 -25103194 - AluSx SINE Alu -20 292 1 2119 186 149 145 chr4 177225868 177226288 -25102059 - L1MC3 LINE L1 -160 7625 7208 330 253 40 10 chr4 177226288 177226387 -25101960 - MLT1F1 LTR MaLR -442 125 24 2119 186 149 145 chr4 177226387 177226531 -25101816 - L1MC3 LINE L1 -577 7208 7066 2252 92 3 3 chr4 177226531 177226835 -25101512 + AluSx SINE Alu 1 304 -8 2119 186 149 145 chr4 177226835 177227138 -25101209 - L1MC3 LINE L1 -719 7066 6655 185 286 107 0 chr4 177227517 177227573 -25100774 - MIR SINE MIR -87 121 60 21 0 0 0 chr4 177228477 177228498 -25099849 + AT_rich Low_complexity Low_complexity 1 21 0 32 81 0 0 chr4 177229341 177229415 -25098932 + AT_rich Low_complexity Low_complexity 1 74 0 22 35 0 0 chr4 177229510 177229539 -25098808 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 177231192 177231213 -25097134 + AT_rich Low_complexity Low_complexity 1 21 0 190 391 69 0 chr4 177232110 177232197 -25096150 + L2 LINE L2 3148 3240 -32 1697 131 27 8 chr4 177232882 177233142 -25095205 - AluSx SINE Alu -26 286 22 253 346 135 0 chr4 177233297 177233401 -25094946 + L2 LINE L2 3145 3262 -10 24 0 0 0 chr4 177233791 177233815 -25094532 + AT_rich Low_complexity Low_complexity 1 24 0 241 273 23 81 chr4 177236137 177236309 -25092038 + L1MC4a LINE L1 265 426 -5997 398 303 30 30 chr4 177236374 177236539 -25091808 - L1MEc LINE L1 -6120 276 112 960 310 75 51 chr4 177236630 177238170 -25090177 + L1MC4a LINE L1 4503 6078 -863 32940 36 15 2 chr4 177238227 177244249 -25084098 + L1PA3 LINE L1 1 6151 -4 23 0 0 0 chr4 177244249 177244272 -25084075 + AT_rich Low_complexity Low_complexity 1 23 0 6503 232 61 57 chr4 177244308 177246736 -25081611 + L1MC4a LINE L1 6164 8602 -1 180 135 0 0 chr4 177248475 177248512 -25079835 + (TTAA)n Simple_repeat Simple_repeat 4 40 0 238 250 14 14 chr4 177248906 177248978 -25079369 - MER69 DNA AcHobo -13 2513 2442 27 81 0 0 chr4 177248993 177249055 -25079292 + AT_rich Low_complexity Low_complexity 1 62 0 785 319 30 11 chr4 177249210 177249480 -25078867 - MER69 DNA AcHobo -1918 608 334 907 192 21 21 chr4 177249489 177249682 -25078665 + LTR41 LTR ERVL 3 195 -578 2271 113 29 6 chr4 177249703 177250048 -25078299 - L1PA13 LINE L1 -23 6140 5788 263 251 191 64 chr4 177250371 177250606 -25077741 + LTR41 LTR ERVL 503 767 -6 397 304 82 18 chr4 177250608 177250779 -25077568 - MER69 DNA AcHobo -887 339 158 239 143 41 0 chr4 177250805 177250854 -25077493 + (TATG)n Simple_repeat Simple_repeat 2 52 0 322 260 0 62 chr4 177250856 177250952 -25077395 + L1MC4 LINE L1 6614 6703 -1339 249 211 0 0 chr4 177250957 177251014 -25077333 + (TATG)n Simple_repeat Simple_repeat 2 58 0 237 83 0 0 chr4 177251045 177251081 -25077266 + (CA)n Simple_repeat Simple_repeat 1 36 0 880 291 9 0 chr4 177251197 177251410 -25076937 + MER58A DNA MER1_type 4 218 -6 271 286 0 0 chr4 177253715 177253778 -25074569 + GA-rich Low_complexity Low_complexity 1 63 0 427 320 8 0 chr4 177254027 177254149 -25074198 - L2 LINE L2 -1 3312 3190 8508 208 57 32 chr4 177254485 177256650 -25071697 - Cheshire DNA MER1_type -6 2414 195 2492 96 126 0 chr4 177256651 177257049 -25071298 + LTR7 LTR ERV1 1 448 -2 17410 96 35 19 chr4 177257051 177259867 -25068480 + HERVH LTR ERV1 1 2995 -4718 6107 88 2 3 chr4 177259846 177260700 -25067647 + HERVH LTR ERV1 3140 3992 -3721 * 4302 144 0 8 chr4 177260703 177261370 -25066977 + HERVH LTR ERV1 4488 5149 -2564 1337 130 23 0 chr4 177261371 177261586 -25066761 + HERVH LTR ERV1 5600 5819 -1894 2336 103 48 13 chr4 177261586 177261963 -25066384 + HERVH LTR ERV1 7324 7713 0 2593 78 126 0 chr4 177261965 177262361 -25065986 + LTR7 LTR ERV1 3 448 -2 590 214 121 6 chr4 177262364 177262537 -25065810 - Cheshire DNA MER1_type -2223 197 5 254 256 50 21 chr4 177262697 177262823 -25065524 - L1MCc LINE L1 -4871 2060 1828 539 302 61 16 chr4 177262897 177263303 -25065044 - L1MCc LINE L1 -4958 1465 1181 1157 252 91 13 chr4 177264815 177265200 -25063147 - L1MD2 LINE L1 -266 6093 5679 3006 140 117 50 chr4 177265202 177265824 -25062523 - MER4A LTR ERV1 0 664 1 1275 235 99 19 chr4 177265827 177266415 -25061932 - L1MD2 LINE L1 -501 5665 5040 641 200 89 48 chr4 177266490 177266803 -25061544 + L1ME1 LINE L1 5817 6332 -2 24 0 0 0 chr4 177267023 177267047 -25061300 + AT_rich Low_complexity Low_complexity 1 24 0 2555 213 55 15 chr4 177267383 177268376 -25059971 + LTR28 LTR ERV1 1 1020 0 750 155 117 132 chr4 177268598 177268939 -25059408 - MER44D DNA MER2_type -3 606 1 2005 93 3 90 chr4 177269492 177269815 -25058532 + AluSg1 SINE Alu 3 297 -12 2327 159 23 51 chr4 177270060 177270259 -25058088 + MSTB LTR MaLR 4 207 -219 1701 103 141 8 chr4 177270259 177270521 -25057826 + AluSg SINE Alu 3 299 -11 2327 159 23 51 chr4 177270521 177270756 -25057591 + MSTB LTR MaLR 207 426 0 2353 57 33 17 chr4 177271465 177271765 -25056582 + AluY SINE Alu 1 305 -6 199 320 300 0 chr4 177271938 177272038 -25056309 - L2 LINE L2 -569 2745 2616 28 0 0 0 chr4 177272638 177272666 -25055681 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 177272716 177272739 -25055608 + AT_rich Low_complexity Low_complexity 1 23 0 2384 55 0 3 chr4 177272980 177273273 -25055074 - AluY SINE Alu -19 292 1 208 209 0 0 chr4 177275049 177275092 -25053255 - L2 LINE L2 -9 3304 3262 3787 186 27 9 chr4 177275228 177276660 -25051687 + L1PBa LINE L1 6 1683 -5180 3973 48 19 0 chr4 177276660 177277141 -25051206 - LTR2B LTR ERV1 0 490 1 3787 186 27 9 chr4 177277141 177277582 -25050765 + L1PBa LINE L1 1683 2114 -4749 389 179 0 24 chr4 177277580 177277664 -25050683 + L1 LINE L1 3278 3359 -3503 * 492 125 0 0 chr4 177277664 177277736 -25050611 - AluS SINE Alu -241 72 1 1548 163 63 48 chr4 177277736 177278067 -25050280 - MER61C LTR ERV1 -98 336 1 235 196 10 72 chr4 177278496 177278593 -25049754 - L1ME4a LINE L1 -2 6119 6029 424 255 129 76 chr4 177279047 177279310 -25049037 - L2 LINE L2 -23 3290 3014 353 255 53 11 chr4 177279391 177279485 -25048862 - L2 LINE L2 -36 3277 3180 830 96 14 14 chr4 177279499 177279645 -25048702 + (GAAA)n Simple_repeat Simple_repeat 1 146 0 676 335 186 25 chr4 177279655 177280265 -25048082 - L2 LINE L2 -238 3075 2351 755 277 65 65 chr4 177280408 177280917 -25047430 + L1MEc LINE L1 39 547 -5849 2942 264 65 85 chr4 177280919 177281856 -25046491 + L1M4 LINE L1 2510 3464 -2682 1839 172 0 0 chr4 177281856 177282153 -25046194 + AluJb SINE Alu 3 299 -13 2942 264 65 85 chr4 177282153 177283594 -25044753 + L1M4 LINE L1 3464 4841 -1305 1522 248 43 22 chr4 177283757 177284172 -25044175 - MLT1C LTR MaLR -2 465 42 216 0 0 0 chr4 177285448 177285472 -25042875 + (TA)n Simple_repeat Simple_repeat 2 25 0 270 176 0 0 chr4 177285543 177285594 -25042753 + (TG)n Simple_repeat Simple_repeat 2 52 0 301 322 0 0 chr4 177285653 177285740 -25042607 + L1MC4 LINE L1 6616 6702 -1340 681 240 0 0 chr4 177285743 177285918 -25042429 + (TA)n Simple_repeat Simple_repeat 2 176 0 345 303 0 0 chr4 177285921 177286010 -25042337 + L1MC4 LINE L1 6614 6702 -1340 236 210 16 0 chr4 177286012 177286074 -25042273 - L1MCa LINE L1 -4358 2068 2006 348 161 0 0 chr4 177286079 177286141 -25042206 + (TA)n Simple_repeat Simple_repeat 2 63 0 235 263 0 53 chr4 177286141 177286236 -25042111 + L1MC4 LINE L1 6614 6703 -1339 3066 164 23 145 chr4 177286549 177287083 -25041264 + L1MCa LINE L1 21 407 -6019 2224 89 7 0 chr4 177287083 177287389 -25040958 - AluSx SINE Alu 0 308 1 3066 164 23 145 chr4 177287389 177287738 -25040609 + L1MCa LINE L1 407 797 -5629 3081 147 22 32 chr4 177287738 177288331 -25040016 + L1MC1 LINE L1 5745 6331 -2 1533 181 22 4 chr4 177290541 177290812 -25037535 + AluJo SINE Alu 9 284 -28 2489 82 0 0 chr4 177292223 177292588 -25035759 - L1P LINE L1 -2579 3567 3203 13228 46 2 16 chr4 177292588 177294183 -25034164 + L1PA5 LINE L1 3675 5262 -892 2330 97 0 3 chr4 177294183 177294491 -25033856 + AluY SINE Alu 1 307 -4 13228 46 2 16 chr4 177294491 177295372 -25032975 + L1PA5 LINE L1 5262 6154 0 21 57 0 0 chr4 177296480 177296515 -25031832 + AT_rich Low_complexity Low_complexity 1 35 0 196 254 108 85 chr4 177297403 177297533 -25030814 - MIR SINE MIR -110 152 20 291 28 0 0 chr4 177297788 177297824 -25030523 + (TG)n Simple_repeat Simple_repeat 2 37 0 194 286 26 26 chr4 177297969 177298046 -25030301 + L2 LINE L2 3232 3308 -5 3531 129 54 3 chr4 177298709 177299283 -25029064 - LTR26 LTR ERV1 0 603 1 200 315 0 0 chr4 177300525 177300579 -25027768 - MIR SINE MIR -127 135 82 21 0 0 0 chr4 177300767 177300788 -25027559 + AT_rich Low_complexity Low_complexity 1 21 0 1827 136 23 45 chr4 177300912 177301220 -25027127 - AluSg SINE Alu -9 301 1 243 0 0 0 chr4 177301374 177301401 -25026946 + (TA)n Simple_repeat Simple_repeat 2 28 0 4354 108 0 5 chr4 177301693 177302312 -25026035 + L1PA11 LINE L1 5559 6174 0 2968 94 45 7 chr4 177302994 177303036 -25025311 - MLT2A1 LTR ERVL 0 444 405 186 43 0 0 chr4 177303036 177303059 -25025288 + (TA)n Simple_repeat Simple_repeat 1 23 0 2968 94 45 7 chr4 177303059 177303442 -25024905 - MLT2A1 LTR ERVL -39 405 3 2933 88 4 41 chr4 177303507 177303972 -25024375 + LTR7 LTR ERV1 1 448 -2 18765 92 22 19 chr4 177303974 177306950 -25021397 + HERVH LTR ERV1 1 2987 -4726 786 162 20 0 chr4 177306944 177307092 -25021255 + HERVH LTR ERV1 3140 3290 -4423 * 3306 105 0 8 chr4 177307082 177307595 -25020752 + HERVH LTR ERV1 3492 4000 -3713 * 4108 136 1 3 chr4 177307590 177308252 -25020095 + HERVH LTR ERV1 4489 5149 -2564 1317 124 18 5 chr4 177308253 177308470 -25019877 + HERVH LTR ERV1 5600 5819 -1894 1918 115 45 70 chr4 177308470 177308870 -25019477 + HERVH LTR ERV1 7324 7713 0 2833 68 94 10 chr4 177308870 177309283 -25019064 + LTR7 LTR ERV1 1 448 -2 747 199 71 58 chr4 177309483 177309802 -25018545 + MSTD LTR MaLR 3 353 -12 6135 223 72 35 chr4 177309805 177309962 -25018385 + MSTD-int LTR MaLR 8 158 -1577 1350 147 128 84 chr4 177309962 177310391 -25017956 - LTR7 LTR ERV1 -2 448 1 6135 223 72 35 chr4 177310391 177311371 -25016976 + MSTD-int LTR MaLR 158 1228 -507 4524 68 78 3 chr4 177311371 177311985 -25016362 + PABL_A LTR ERV1 1 660 0 6135 223 72 35 chr4 177311985 177312507 -25015840 + MSTD-int LTR MaLR 1228 1729 -6 541 172 49 2 chr4 177312512 177312639 -25015708 + MSTD LTR MaLR 1 148 -217 386 98 0 0 chr4 177312768 177312829 -25015518 + MSTB2 LTR MaLR 397 457 0 521 94 52 21 chr4 177312945 177313041 -25015306 + MER4A LTR ERV1 1 99 -565 1643 134 3 77 chr4 177313041 177313413 -25014934 + MER4A LTR ERV1 262 664 0 2389 60 0 3 chr4 177314251 177314549 -25013798 - AluY SINE Alu -14 297 1 3087 162 28 26 chr4 177314792 177315402 -25012945 + LTR36 LTR ERV1 1 611 0 557 221 22 22 chr4 177315502 177315638 -25012709 - MLT1H LTR MaLR -251 298 163 243 260 132 44 chr4 177317048 177317275 -25011072 - MLT1H LTR MaLR -8 547 301 849 272 27 15 chr4 177317312 177317573 -25010774 - MLT1H LTR MaLR -285 264 1 2155 122 0 0 chr4 177317874 177318169 -25010178 + AluSx SINE Alu 2 296 -16 187 318 242 19 chr4 177321354 177321565 -25006782 + L2 LINE L2 2836 3093 -179 221 294 8 118 chr4 177321686 177321725 -25006622 + L2 LINE L2 3166 3208 -64 2342 89 0 3 chr4 177321725 177322027 -25006320 - AluY SINE Alu -10 301 1 221 294 8 118 chr4 177322027 177322106 -25006241 + L2 LINE L2 3208 3271 -1 218 312 14 106 chr4 177322296 177322437 -25005910 + L2 LINE L2 2583 2710 -604 1853 128 44 0 chr4 177322442 177322742 -25005605 + AluSq SINE Alu 1 312 0 1120 153 145 4 chr4 177326085 177326197 -25002150 - MLT2B1 LTR ERVL -252 268 173 2400 141 41 7 chr4 177326197 177326608 -25001739 - MSTA LTR MaLR -3 425 1 1120 153 145 4 chr4 177326608 177326730 -25001617 - MLT2B1 LTR ERVL -347 173 1 26 30 0 0 chr4 177326989 177327022 -25001325 + AT_rich Low_complexity Low_complexity 1 33 0 1464 211 93 9 chr4 177327157 177327578 -25000769 - MLT1C LTR MaLR 0 467 12 194 128 26 0 chr4 177327822 177327861 -25000486 + (CATATA)n Simple_repeat Simple_repeat 5 44 0 631 283 129 38 chr4 177329625 177330438 -24997909 + L1ME3A LINE L1 5260 6146 -24 309 287 22 45 chr4 177331509 177331777 -24996570 + L1MEc LINE L1 1642 1903 -4704 29 28 0 0 chr4 177331911 177331947 -24996400 + AT_rich Low_complexity Low_complexity 1 36 0 526 220 14 134 chr4 177331953 177332071 -24996276 + MER82 DNA MER2_type 6 137 -516 3573 142 14 33 chr4 177332071 177332613 -24995734 - L1PA15 LINE L1 -13 6152 5601 2409 140 3 3 chr4 177332613 177332977 -24995370 + THE1B LTR MaLR 1 364 0 8929 133 36 58 chr4 177332977 177334592 -24993755 + THE1B-int LTR MaLR 1 1580 0 2408 143 3 0 chr4 177334592 177334955 -24993392 + THE1B LTR MaLR 1 364 0 3573 142 14 33 chr4 177334955 177335052 -24993295 - L1PA15 LINE L1 -561 5604 5523 526 220 14 134 chr4 177335052 177335156 -24993191 + MER82 DNA MER2_type 137 201 -452 24 67 0 0 chr4 177335156 177335201 -24993146 + AT_rich Low_complexity Low_complexity 1 45 0 1791 141 91 0 chr4 177336659 177336935 -24991412 - AluSc SINE Alu -8 301 1 1335 302 23 2 chr4 177337300 177337741 -24990606 + MER82 DNA MER2_type 204 653 0 732 245 61 45 chr4 177337757 177338233 -24990114 - MLT1E2 LTR MaLR -2 624 68 380 289 137 31 chr4 177338427 177338795 -24989552 + L1MEc LINE L1 2201 2638 -3947 227 204 20 0 chr4 177338802 177338851 -24989496 + L1 LINE L1 12 61 -5267 412 68 14 40 chr4 177338864 177338938 -24989409 + (GA)n Simple_repeat Simple_repeat 2 73 0 6406 218 32 12 chr4 177338981 177342870 -24985477 + L1 LINE L1 69 4025 -2303 610 208 83 24 chr4 177342923 177343091 -24985256 + L1 LINE L1 5236 5413 -915 357 159 0 0 chr4 177343235 177343298 -24985049 + (TA)n Simple_repeat Simple_repeat 1 63 0 261 231 11 22 chr4 177343303 177343394 -24984953 - L1MC4 LINE L1 -1339 6703 6614 1414 190 118 128 chr4 177344298 177344897 -24983450 - MLT1E LTR MaLR 0 593 1 25 31 0 0 chr4 177345212 177345244 -24983103 + AT_rich Low_complexity Low_complexity 1 32 0 368 316 14 7 chr4 177345990 177346129 -24982218 + MIR SINE MIR 123 262 0 29 28 0 0 chr4 177346163 177346199 -24982148 + AT_rich Low_complexity Low_complexity 1 36 0 6327 192 34 11 chr4 177346199 177348523 -24979824 - L1MA4A LINE L1 -7 6296 3916 10821 171 71 7 chr4 177348524 177351003 -24977344 + L1MA2 LINE L1 22 2692 -4873 5981 203 26 10 chr4 177351003 177352774 -24975573 + L1MA2 LINE L1 3247 5043 -2522 729 252 72 45 chr4 177352775 177353258 -24975089 + LTR28 LTR ERV1 1 1297 -10 2673 196 55 16 chr4 177353400 177354074 -24974273 + L1MA2 LINE L1 5037 5705 -1860 * 16866 189 35 12 chr4 177354052 177357069 -24971278 + L1PA13 LINE L1 2868 6031 -1551 2123 127 0 13 chr4 177357069 177357377 -24970970 + AluSg SINE Alu 1 304 -6 16866 189 35 12 chr4 177357377 177358966 -24969381 + L1PA13 LINE L1 6031 7582 0 6759 158 13 6 chr4 177358963 177360967 -24967380 + L1MA2 LINE L1 5698 7716 -7 * 2319 89 0 3 chr4 177360989 177361291 -24967056 + AluY SINE Alu 1 301 -10 242 212 8 0 chr4 177361296 177361368 -24966979 - L1M4 LINE L1 -2213 4635 4562 8642 235 50 78 chr4 177361379 177362684 -24965663 - L1M4 LINE L1 -3357 3491 2151 15719 57 1 5 chr4 177362684 177365485 -24962862 - L1PA5 LINE L1 0 6154 3356 8642 235 50 78 chr4 177365485 177367774 -24960573 - L1M4 LINE L1 -4697 2151 1 1142 142 25 0 chr4 177369714 177370195 -24958152 + L1MA3 LINE L1 5702 6300 -5 22 0 0 0 chr4 177370195 177370217 -24958130 + AT_rich Low_complexity Low_complexity 1 22 0 1694 171 17 11 chr4 177372119 177372406 -24955941 - AluJb SINE Alu -22 290 2 33 43 0 0 chr4 177373049 177373096 -24955251 + AT_rich Low_complexity Low_complexity 1 47 0 204 111 0 0 chr4 177373140 177373176 -24955171 + (TA)n Simple_repeat Simple_repeat 1 36 0 180 300 57 14 chr4 177373187 177373257 -24955090 - MIR SINE MIR -100 162 90 12787 193 32 19 chr4 177373271 177375451 -24952896 - L1M1 LINE L1 -610 5695 3436 2280 110 0 0 chr4 177375451 177375752 -24952595 - AluY SINE Alu -10 301 1 12787 193 32 19 chr4 177375752 177376928 -24951419 - L1M1 LINE L1 -2869 3436 2276 27 0 0 0 chr4 177376981 177377008 -24951339 + AT_rich Low_complexity Low_complexity 1 27 0 209 146 0 42 chr4 177377170 177377218 -24951129 + (GGAAA)n Simple_repeat Simple_repeat 4 49 0 27 62 0 0 chr4 177377640 177377688 -24950659 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr4 177377948 177377972 -24950375 + AT_rich Low_complexity Low_complexity 1 24 0 2168 105 0 3 chr4 177378058 177378353 -24949994 - AluSq SINE Alu -19 294 1 181 355 16 0 chr4 177379723 177379785 -24948562 + MIR SINE MIR 3 65 -197 327 151 47 70 chr4 177380851 177380937 -24947410 - L1MA9 LINE L1 -378 5934 5851 1239 139 91 45 chr4 177381452 177381729 -24946618 + L1MA9 LINE L1 5849 6143 -169 201 39 0 0 chr4 177381729 177381755 -24946592 + (TC)n Simple_repeat Simple_repeat 1 26 0 1239 139 91 45 chr4 177381755 177381786 -24946561 + L1MA9 LINE L1 6143 6171 -141 264 277 15 0 chr4 177381794 177381859 -24946488 - MER5A DNA MER1_type -123 66 1 193 366 51 40 chr4 177382051 177382226 -24946121 + MIR SINE MIR 20 196 -66 30 27 0 0 chr4 177382465 177382502 -24945845 + AT_rich Low_complexity Low_complexity 1 37 0 261 193 0 0 chr4 177382518 177382575 -24945772 + L1MC2 LINE L1 5193 5249 -897 4896 183 27 22 chr4 177382583 177383726 -24944621 + L1MC2 LINE L1 5193 6335 -9 371 208 66 0 chr4 177383769 177383875 -24944472 - MER103 DNA DNA -8 158 46 1489 151 42 28 chr4 177383875 177384159 -24944188 + AluJb SINE Alu 1 288 -24 347 268 14 7 chr4 177384311 177384449 -24943898 + (TA)n Simple_repeat Simple_repeat 1 139 0 224 298 0 0 chr4 177384555 177384612 -24943735 + L2 LINE L2 1890 1946 -1368 1408 173 44 51 chr4 177384617 177385078 -24943269 - MLT2A2 LTR ERVL 0 554 93 271 263 9 88 chr4 177385617 177385731 -24942616 + MIR SINE MIR 145 249 -13 474 18 0 0 chr4 177385920 177385975 -24942372 + (TA)n Simple_repeat Simple_repeat 2 56 0 312 27 0 0 chr4 177386030 177386067 -24942280 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 360 287 40 53 chr4 177386068 177386218 -24942129 - MIR SINE MIR -114 148 1 357 300 50 0 chr4 177386682 177386782 -24941565 + MIR SINE MIR 16 120 -142 220 200 0 73 chr4 177386755 177386810 -24941537 + L2 LINE L2 3247 3297 -16 * 1908 135 3 0 chr4 177387233 177387521 -24940826 + AluJo SINE Alu 1 289 -23 231 207 61 85 chr4 177387525 177387607 -24940740 + MER67C LTR ERV1 15 94 -616 26 30 0 0 chr4 177388000 177388033 -24940314 + AT_rich Low_complexity Low_complexity 1 33 0 1842 120 25 4 chr4 177388704 177388980 -24939367 + AluSx SINE Alu 1 282 -30 423 0 0 0 chr4 177388983 177389030 -24939317 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr4 177389050 177389073 -24939274 + AT_rich Low_complexity Low_complexity 1 23 0 635 223 22 7 chr4 177389085 177389224 -24939123 - MLT1C LTR MaLR -3 464 324 489 309 26 20 chr4 177389249 177389401 -24938946 - MIR SINE MIR -87 175 23 280 241 48 18 chr4 177389559 177389725 -24938622 + (TA)n Simple_repeat Simple_repeat 1 171 0 754 186 0 0 chr4 177390058 177390187 -24938160 + FLAM_C SINE Alu 1 129 -4 279 0 0 0 chr4 177390639 177390670 -24937677 + (CA)n Simple_repeat Simple_repeat 2 32 0 248 315 49 0 chr4 177441425 177441568 -24886779 - L1MEd LINE L1 -5901 218 69 4092 166 31 8 chr4 177441775 177442481 -24885866 - MER72 LTR ERV1 0 722 1 182 250 96 19 chr4 177443173 177443277 -24885070 + L2 LINE L2 3126 3237 -76 186 103 0 0 chr4 177443327 177443356 -24884991 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 783 245 89 126 chr4 177443365 177444054 -24884293 - L2 LINE L2 -22 3291 2616 45 48 0 39 chr4 177444111 177444214 -24884133 + AT_rich Low_complexity Low_complexity 1 99 0 1286 204 39 11 chr4 177444220 177444499 -24883848 - AluJb SINE Alu -25 287 1 432 341 7 0 chr4 177444500 177444638 -24883709 - L2 LINE L2 -687 2627 2489 1178 63 4 173 chr4 177444638 177444875 -24883472 + MER107 DNA MER1_type 1 197 0 679 370 8 0 chr4 177445020 177445258 -24883089 - MIR SINE MIR -11 251 12 249 33 0 0 chr4 177445346 177445376 -24882971 + (CA)n Simple_repeat Simple_repeat 2 31 0 454 274 65 36 chr4 177446112 177446280 -24882067 + MIR SINE MIR 89 261 -1 232 70 47 0 chr4 177446677 177446720 -24881627 + (TTATA)n Simple_repeat Simple_repeat 5 49 0 2655 134 21 0 chr4 177446888 177447307 -24881040 + MSTA LTR MaLR 1 428 0 2909 274 44 17 chr4 177447422 177449747 -24878600 - L1MC3 LINE L1 -713 5449 4463 2295 268 90 26 chr4 177449741 177450880 -24877467 - L1MC3 LINE L1 -1949 4197 2987 * 5900 127 11 33 chr4 177451010 177452104 -24876243 - L1PA13 LINE L1 -1 6162 5071 1760 204 43 3 chr4 177453462 177453814 -24874533 - MLT1A2 LTR MaLR -4 370 5 2674 91 3 0 chr4 177453930 177454291 -24874056 - MER41B LTR ERV1 -273 362 1 24 32 0 0 chr4 177455453 177455484 -24872863 + AT_rich Low_complexity Low_complexity 1 31 0 2185 76 0 10 chr4 177455829 177456119 -24872228 + AluY SINE Alu 1 287 -24 33 0 0 0 chr4 177456119 177456152 -24872195 + AT_rich Low_complexity Low_complexity 1 33 0 1744 143 0 21 chr4 177457772 177458059 -24870288 + AluSx SINE Alu 1 281 -31 24 32 0 0 chr4 177458314 177458345 -24870002 + AT_rich Low_complexity Low_complexity 1 31 0 297 288 99 73 chr4 177458395 177458503 -24869844 + MIR SINE MIR 7 124 -138 1993 154 3 6 chr4 177458503 177458815 -24869532 + AluSx SINE Alu 2 312 0 297 288 99 73 chr4 177458815 177458897 -24869450 + MIR SINE MIR 124 202 -60 771 165 13 44 chr4 177458911 177459069 -24869278 - MSTD LTR MaLR 0 396 244 628 242 31 31 chr4 177459294 177459488 -24868859 - MSTD LTR MaLR -171 194 1 806 138 0 0 chr4 177460036 177460159 -24868188 - AluSg/x SINE Alu -12 300 178 2223 130 82 52 chr4 177460283 177460640 -24867707 - L1PA13 LINE L1 -4 6159 5773 1534 200 30 13 chr4 177460640 177460945 -24867402 - AluJb SINE Alu -2 310 1 2223 130 82 52 chr4 177460945 177461031 -24867316 - L1PA13 LINE L1 -390 5773 5691 411 21 0 0 chr4 177461253 177461301 -24867046 + (CA)n Simple_repeat Simple_repeat 2 49 0 387 328 119 20 chr4 177461454 177461655 -24866692 + MIR SINE MIR 5 225 -37 256 379 89 0 chr4 177461733 177461857 -24866490 - L2 LINE L2 -13 3259 3125 24 32 0 0 chr4 177462389 177462420 -24865927 + AT_rich Low_complexity Low_complexity 1 31 0 869 172 0 0 chr4 177462876 177463010 -24865337 + AluJb SINE Alu 154 287 -25 2802 166 62 16 chr4 177463299 177463665 -24864682 - MER6A DNA MER2_type -260 605 201 351 60 0 0 chr4 177463665 177463715 -24864632 + (CTCA)n Simple_repeat Simple_repeat 4 53 0 2802 166 62 16 chr4 177463715 177463926 -24864421 - MER6A DNA MER2_type -664 201 1 416 310 48 27 chr4 177465669 177465856 -24862491 + MIR SINE MIR 49 239 -23 661 281 62 63 chr4 177466128 177466648 -24861699 + HAL1b LINE L1 571 1089 -259 26 0 0 0 chr4 177467499 177467525 -24860822 + AT_rich Low_complexity Low_complexity 1 26 0 991 110 0 0 chr4 177467525 177467661 -24860686 - AluSq/x SINE Alu -177 136 1 30 45 0 0 chr4 177468708 177468752 -24859595 + AT_rich Low_complexity Low_complexity 1 44 0 1021 41 0 0 chr4 177469067 177469189 -24859158 + AluY SINE Alu 173 294 -17 22 35 0 0 chr4 177469649 177469678 -24858669 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 177470537 177470559 -24857788 + AT_rich Low_complexity Low_complexity 1 22 0 398 301 72 24 chr4 177471133 177471299 -24857048 - MIR SINE MIR -33 229 56 469 313 76 20 chr4 177472091 177472289 -24856058 + MIR SINE MIR 54 262 0 344 167 14 0 chr4 177472411 177472483 -24855864 + (TA)n Simple_repeat Simple_repeat 2 74 0 658 317 57 4 chr4 177472599 177472861 -24855486 + L2 LINE L2 1705 1980 -1334 558 317 6 6 chr4 177472870 177473050 -24855297 + L2 LINE L2 2121 2300 -1014 745 231 28 9 chr4 177476264 177476476 -24851871 - L1MD3 LINE L1 -8 7987 7772 277 28 28 0 chr4 177476488 177476524 -24851823 + MSTA LTR MaLR 1 37 -391 376 106 30 0 chr4 177476630 177476712 -24851635 - Alu SINE Alu -232 67 1 2255 154 56 7 chr4 177477049 177477457 -24850890 - MSTA LTR MaLR 0 428 1 1380 232 37 46 chr4 177477849 177478259 -24850088 - MER31B LTR ERV1 -43 423 18 243 0 0 0 chr4 177482373 177482400 -24845947 + (T)n Simple_repeat Simple_repeat 1 27 0 1222 117 22 6 chr4 177482400 177482579 -24845768 - AluSx SINE Alu -130 182 1 258 334 45 62 chr4 177483040 177483396 -24844951 + L2 LINE L2 2821 3170 -102 30 0 0 0 chr4 177483497 177483527 -24844820 + AT_rich Low_complexity Low_complexity 1 30 0 5449 236 46 38 chr4 177484597 177486457 -24841890 - L1MEc LINE L1 -2047 4099 2253 3522 115 9 7 chr4 177486485 177487024 -24841323 + L1MA1 LINE L1 5449 5988 -314 1732 98 19 4 chr4 177487124 177487390 -24840957 + L1MA1 LINE L1 6033 6302 0 21 36 0 0 chr4 177487404 177487432 -24840915 + AT_rich Low_complexity Low_complexity 1 28 0 2029 230 29 5 chr4 177487471 177487915 -24840432 - MER82 DNA MER2_type 0 653 199 25 0 0 0 chr4 177488064 177488089 -24840258 + AT_rich Low_complexity Low_complexity 1 25 0 664 231 38 12 chr4 177488267 177488427 -24839920 - MER82 DNA MER2_type -480 173 10 237 258 79 21 chr4 177488512 177488702 -24839645 + L1P LINE L1 4123 4323 -1823 180 0 0 0 chr4 177489232 177489252 -24839095 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 223 380 148 21 chr4 177489287 177489626 -24838721 + L2 LINE L2 372 753 -2561 2186 182 38 61 chr4 177489641 177490163 -24838184 - MER67D LTR ERV1 0 514 5 2082 113 131 18 chr4 177490456 177490837 -24837510 - MSTA LTR MaLR -2 426 3 4843 196 21 5 chr4 177490839 177491736 -24836611 - MSTA-int LTR MaLR 0 1651 740 3895 195 12 8 chr4 177491923 177492722 -24835625 - L1 LINE L1 -1380 4766 3964 2278 100 0 3 chr4 177494062 177494361 -24833986 - AluSq SINE Alu -13 300 3 361 330 100 40 chr4 177494664 177494964 -24833383 + L2 LINE L2 2432 2749 -565 1734 176 31 11 chr4 177495153 177495512 -24832835 - LTR60 LTR ERV1 0 586 221 367 229 0 57 chr4 177495566 177495671 -24832676 - LTR60 LTR ERV1 -480 106 8 216 265 129 53 chr4 177496033 177496165 -24832182 + L2 LINE L2 3166 3307 -6 250 295 133 19 chr4 177496351 177496456 -24831891 + L2 LINE L2 3197 3313 0 1172 251 76 24 chr4 177497589 177497621 -24830726 - HERVL40 LTR ERVL -927 4603 4574 2221 124 0 0 chr4 177497621 177497928 -24830419 - AluSx SINE Alu -3 309 3 1172 251 76 24 chr4 177497928 177498278 -24830069 - HERVL40 LTR ERVL -956 4574 4201 2887 149 38 123 chr4 177498278 177499024 -24829323 - LTR8 LTR ERV1 0 691 10 4804 271 64 15 chr4 177499061 177499369 -24828978 - HERVL40 LTR ERVL -1327 4203 3912 2083 113 50 0 chr4 177499369 177499652 -24828695 - AluSx SINE Alu -15 297 1 4804 271 64 15 chr4 177499652 177500947 -24827400 - HERVL40 LTR ERVL -1618 3912 2521 1071 306 86 49 chr4 177500947 177501618 -24826729 - HERVL40 LTR ERVL -3921 1609 902 2314 86 17 0 chr4 177501618 177501908 -24826439 - AluSg1 SINE Alu -14 295 1 1071 306 86 49 chr4 177501908 177502039 -24826308 - HERVL40 LTR ERVL -4628 902 777 533 275 71 99 chr4 177502131 177502939 -24825408 - L1MEd LINE L1 -4445 1684 862 2278 84 0 3 chr4 177503095 177503382 -24824965 - AluY SINE Alu -25 286 1 2087 118 10 3 chr4 177503839 177504143 -24824204 - AluSg SINE Alu -4 306 1 1843 253 70 34 chr4 177504145 177504937 -24823410 - L1ME1 LINE L1 -112 6054 5236 673 217 46 32 chr4 177505152 177505369 -24822978 - L1ME1 LINE L1 -2019 4127 3908 1518 141 235 0 chr4 177505373 177505713 -24822634 + MSTB LTR MaLR 6 425 -1 1312 322 28 2 chr4 177505714 177506350 -24821997 - L1ME1 LINE L1 -2233 3913 3261 6244 136 6 7 chr4 177506626 177508467 -24819880 - L1PA11 LINE L1 -2 6172 4330 23 54 0 0 chr4 177510119 177510156 -24818191 + AT_rich Low_complexity Low_complexity 1 37 0 204 382 24 24 chr4 177510548 177510671 -24817676 - MIR SINE MIR -69 139 17 23 92 0 0 chr4 177512171 177512236 -24816111 + AT_rich Low_complexity Low_complexity 1 65 0 2120 111 7 0 chr4 177512250 177512556 -24815791 - AluSx SINE Alu 0 308 1 218 200 22 0 chr4 177512602 177512647 -24815700 - L2 LINE L2 -13 3259 3214 450 0 0 0 chr4 177513211 177513261 -24815086 + (TG)n Simple_repeat Simple_repeat 2 51 0 1277 111 78 9 chr4 177513895 177514112 -24814235 + Tigger5 DNA MER2_type 2091 2322 -1 2243 91 7 10 chr4 177514991 177515298 -24813049 - AluSc SINE Alu -3 306 1 225 242 0 0 chr4 177515468 177515530 -24812817 + (GTTTG)n Simple_repeat Simple_repeat 3 64 0 27 62 0 0 chr4 177515782 177515830 -24812517 + AT_rich Low_complexity Low_complexity 1 48 0 542 244 0 0 chr4 177516060 177516183 -24812164 + LTR16A LTR ERVL 328 450 0 319 333 20 0 chr4 177516184 177516286 -24812061 - MIR SINE MIR -60 148 45 212 401 27 0 chr4 177517845 177517992 -24810355 + MIR3 SINE MIR 57 207 -1 1133 317 30 61 chr4 177519101 177519366 -24808981 - L2 LINE L2 -1 3312 3040 2382 100 0 0 chr4 177519366 177519665 -24808682 - AluSq SINE Alu -10 303 5 1133 317 30 61 chr4 177519665 177520208 -24808139 - L2 LINE L2 -273 3040 2530 2191 240 97 34 chr4 177520209 177521243 -24807104 + LTR28 LTR ERV1 2 1755 0 1833 263 46 51 chr4 177521243 177521855 -24806492 - L2 LINE L2 -781 2533 1925 262 200 200 10 chr4 177522085 177522185 -24806162 + MIR3 SINE MIR 88 206 -2 1784 194 3 0 chr4 177523298 177523592 -24804755 + AluJo SINE Alu 1 295 -17 22 56 0 0 chr4 177525037 177525073 -24803274 + AT_rich Low_complexity Low_complexity 1 36 0 232 359 83 28 chr4 177526865 177527010 -24801337 - MIR3 SINE MIR -54 154 2 475 203 17 51 chr4 177527073 177527191 -24801156 - L2 LINE L2 0 3313 3200 2352 37 0 0 chr4 177527724 177527994 -24800353 + AluY SINE Alu 35 304 -7 2443 62 7 0 chr4 177528977 177529285 -24799062 + AluY SINE Alu 1 310 -1 2446 84 0 0 chr4 177531121 177531431 -24796916 + AluY SINE Alu 1 310 -1 421 160 50 34 chr4 177531855 177531974 -24796373 - MER45A DNA AcHobo -1 177 62 1745 180 39 14 chr4 177532602 177532958 -24795389 + MLT1A1 LTR MaLR 1 365 0 26 0 0 0 chr4 177533216 177533242 -24795105 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr4 177533577 177533606 -24794741 + AT_rich Low_complexity Low_complexity 1 29 0 2333 99 0 0 chr4 177534160 177534453 -24793894 + AluSg SINE Alu 1 293 -17 2000 84 84 0 chr4 177534536 177534809 -24793538 + AluY SINE Alu 1 296 -15 333 0 0 0 chr4 177534809 177534846 -24793501 + (TA)n Simple_repeat Simple_repeat 1 37 0 207 100 0 0 chr4 177534846 177534876 -24793471 + (TG)n Simple_repeat Simple_repeat 2 31 0 12114 180 21 51 chr4 177535178 177535892 -24792455 + L1MA4A LINE L1 2611 3345 -3660 1029 172 0 0 chr4 177535892 177536049 -24792298 + AluJb SINE Alu 140 296 -16 12114 180 21 51 chr4 177536049 177539033 -24789314 + L1MA4A LINE L1 3345 6338 -667 1067 111 15 205 chr4 177539033 177539120 -24789227 + LTR12 LTR ERV1 2 104 -610 2257 82 0 0 chr4 177539120 177539436 -24788911 + AluY SINE Alu 1 316 0 1067 111 15 205 chr4 177539436 177539688 -24788659 + LTR12 LTR ERV1 104 277 -437 289 247 0 0 chr4 177539688 177539769 -24788578 + LTR30 LTR ERV1 544 624 -98 756 143 25 0 chr4 177539769 177539888 -24788459 + LTR12 LTR ERV1 359 480 -234 3294 167 38 11 chr4 177539889 177540453 -24787894 + L1MA4A LINE L1 6334 6920 -85 2151 160 41 56 chr4 177540453 177540921 -24787426 + LOR1b LTR ERV1 1 461 0 3294 167 38 11 chr4 177540921 177541009 -24787338 + L1MA4A LINE L1 6920 7004 -1 354 194 19 84 chr4 177541014 177541169 -24787178 + L1MA9 LINE L1 6167 6311 -1 * 862 227 44 20 chr4 177541163 177541523 -24786824 + L1M4c LINE L1 2224 2618 -3764 * 11402 191 12 22 chr4 177541522 177543738 -24784609 + L1PA15-16 LINE L1 448 2286 -4563 2201 100 0 13 chr4 177543738 177544037 -24784310 + AluY SINE Alu 1 295 -16 11402 191 12 22 chr4 177544037 177544848 -24783499 + L1PA15-16 LINE L1 2286 3104 -3745 2977 135 58 2 chr4 177544861 177545342 -24783005 - L1P LINE L1 -5626 520 13 375 218 0 10 chr4 177545343 177545444 -24782903 + L1M4c LINE L1 3652 3751 -2631 307 252 0 48 chr4 177545446 177545549 -24782798 - L1PA15-16 LINE L1 -2541 4308 4211 245 182 0 0 chr4 177545541 177545585 -24782762 + L1PA15-16 LINE L1 4325 4368 -2481 * 257 291 0 13 chr4 177546051 177546130 -24782217 + CT-rich Low_complexity Low_complexity 1 78 0 358 275 92 74 chr4 177546521 177547021 -24781326 + L1M4 LINE L1 2660 3174 -2972 4831 114 122 5 chr4 177547054 177547904 -24780443 - Tigger3b DNA MER2_type -5 1226 277 636 182 0 0 chr4 177547907 177548006 -24780341 - Tigger3b DNA MER2_type -1131 100 2 300 91 0 0 chr4 177548378 177548422 -24779925 + (CA)n Simple_repeat Simple_repeat 2 45 0 1977 146 149 11 chr4 177548599 177548975 -24779372 + MSTA LTR MaLR 1 428 0 9048 145 17 34 chr4 177548977 177550582 -24777765 + MSTA-int LTR MaLR 3 1580 0 1631 189 144 8 chr4 177550582 177550958 -24777389 + MSTA LTR MaLR 2 428 0 564 217 147 13 chr4 177551321 177551478 -24776869 - MLT1D LTR MaLR -6 499 322 635 199 76 11 chr4 177551609 177551979 -24776368 - MER88 LTR ERVL 0 464 1 573 293 221 16 chr4 177552002 177552442 -24775905 + L2 LINE L2 2444 2973 -341 1864 171 3 7 chr4 177552446 177552751 -24775596 - AluJb SINE Alu -8 304 1 251 146 0 0 chr4 177552882 177552923 -24775424 + HSMAR1 DNA Mariner 1247 1287 0 959 294 40 66 chr4 177553692 177553975 -24774372 + L1MDa LINE L1 82 344 -6196 1456 192 103 32 chr4 177553975 177554345 -24774002 + MSTD LTR MaLR 1 396 0 959 294 40 66 chr4 177554345 177554635 -24773712 + L1MDa LINE L1 344 640 -5900 2429 215 6 13 chr4 177554796 177555266 -24773081 + MER70A LTR ERVL 6 472 0 3329 224 110 43 chr4 177555760 177556988 -24771359 + L1MDa LINE L1 1010 2342 -4198 986 249 72 47 chr4 177556988 177557161 -24771186 + MSTD LTR MaLR 1 168 -228 1543 137 5 0 chr4 177557161 177557380 -24770967 + AluSx SINE Alu 38 257 -55 986 249 72 47 chr4 177557380 177557592 -24770755 + MSTD LTR MaLR 168 396 0 3329 224 110 43 chr4 177557592 177557749 -24770598 + L1MDa LINE L1 2342 2487 -4053 2458 166 51 112 chr4 177557746 177557997 -24770350 + L1MD2 LINE L1 5689 5954 -405 * 1958 129 7 3 chr4 177557997 177558292 -24770055 - AluSx SINE Alu -16 296 1 2458 166 51 112 chr4 177558292 177558745 -24769602 + L1MD2 LINE L1 5954 6350 -9 6809 76 67 17 chr4 177559278 177560692 -24767655 - L1PA7 LINE L1 -3 6151 4648 7070 110 5 17 chr4 177560693 177561465 -24766882 + L1P LINE L1 2423 3178 -2968 2302 91 0 3 chr4 177561465 177561763 -24766584 + AluY SINE Alu 1 297 -14 7070 110 5 17 chr4 177561763 177562100 -24766247 + L1P LINE L1 3178 3518 -2628 221 321 132 6 chr4 177562908 177563067 -24765280 - MIR SINE MIR -71 191 13 2112 155 55 69 chr4 177563739 177564248 -24764099 + MLT1D LTR MaLR 1 502 -3 1898 123 7 45 chr4 177565253 177565563 -24762784 + AluSx SINE Alu 1 298 -14 2074 137 3 0 chr4 177566009 177566316 -24762031 + AluSp SINE Alu 1 308 -5 37 39 0 0 chr4 177566853 177566904 -24761443 + AT_rich Low_complexity Low_complexity 1 51 0 221 244 0 0 chr4 177568560 177568605 -24759742 + GA-rich Low_complexity Low_complexity 2 46 0 239 246 0 33 chr4 177568651 177568712 -24759635 + L1M2 LINE L1 5509 5567 -745 248 253 13 13 chr4 177568715 177568790 -24759557 + MER82 DNA MER2_type 578 652 -1 22 0 0 0 chr4 177568853 177568875 -24759472 + AT_rich Low_complexity Low_complexity 1 22 0 315 285 88 62 chr4 177568932 177569237 -24759110 + L1ME3 LINE L1 5555 5867 -295 29 60 0 0 chr4 177569529 177569579 -24758768 + AT_rich Low_complexity Low_complexity 1 50 0 525 288 70 10 chr4 177569643 177569956 -24758391 + Charlie2 DNA MER1_type 2508 2839 -23 187 200 89 0 chr4 177570792 177570837 -24757510 + MIR SINE MIR 212 260 -2 226 296 83 28 chr4 177570954 177571062 -24757285 - MER117 DNA MER1_type -78 119 6 630 302 35 26 chr4 177571234 177571466 -24756881 - MIR SINE MIR -20 242 9 457 294 54 5 chr4 177572287 177572508 -24755839 - L1MEc LINE L1 -2324 3891 3660 1329 181 67 12 chr4 177572512 177572766 -24755581 + MLT1A1 LTR MaLR 6 273 -92 1135 100 24 0 chr4 177572779 177572949 -24755398 - L1MA3 LINE L1 0 6305 6132 1623 115 16 0 chr4 177572949 177573202 -24755145 + L1MA3 LINE L1 5807 6063 -242 500 181 32 0 chr4 177573206 177573300 -24755047 + MLT1A1 LTR MaLR 269 365 0 250 224 0 0 chr4 177573334 177573392 -24754955 - L1MA9 LINE L1 -32 6280 6223 1150 269 42 35 chr4 177573398 177574134 -24754213 - L1MEc LINE L1 -2580 3635 2895 375 218 9 18 chr4 177574126 177574236 -24754111 - L1MEc LINE L1 -3825 2390 2282 * 1799 180 50 3 chr4 177574236 177574559 -24753788 - MER7A DNA MER2_type -9 337 2 337 217 81 2 chr4 177574559 177574685 -24753662 - L1MEc LINE L1 -3926 2303 2157 424 330 53 11 chr4 177574966 177575230 -24753117 - L1MEc LINE L1 -4576 1820 1546 3806 142 81 16 chr4 177575257 177575945 -24752402 + L1PB1 LINE L1 3 735 -6128 * 13808 173 27 11 chr4 177575941 177580121 -24748226 + L1PB1 LINE L1 2617 6867 0 360 263 143 64 chr4 177580284 177580963 -24747384 - L1MEc LINE L1 -4690 1525 832 869 136 0 0 chr4 177581428 177581560 -24746787 - FLAM_C SINE Alu -1 132 1 21 0 0 0 chr4 177581681 177581702 -24746645 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr4 177582951 177582995 -24745352 + AT_rich Low_complexity Low_complexity 1 44 0 359 255 64 13 chr4 177583091 177583248 -24745099 + L1ME4a LINE L1 5956 6120 -1 198 0 0 0 chr4 177584491 177584513 -24743834 + (A)n Simple_repeat Simple_repeat 1 22 0 829 164 6 6 chr4 177584616 177584781 -24743566 + GA-rich Low_complexity Low_complexity 2 166 0 699 113 37 16 chr4 177585490 177585739 -24742608 + (TAGA)n Simple_repeat Simple_repeat 1 254 0 504 311 64 25 chr4 177585774 177586098 -24742249 - L2 LINE L2 -200 3113 2764 7081 134 23 2 chr4 177586172 177587143 -24741204 + L1PA10 LINE L1 4089 5039 -1129 2369 123 5 32 chr4 177587143 177587517 -24740830 + THE1B LTR MaLR 1 364 0 11409 110 2 0 chr4 177587517 177589093 -24739254 + THE1B-int LTR MaLR 1 1580 0 2432 116 5 32 chr4 177589095 177589467 -24738880 + THE1B LTR MaLR 3 364 0 7081 134 23 2 chr4 177589467 177590505 -24737842 + L1PA10 LINE L1 5039 6157 -11 2225 116 3 7 chr4 177590690 177591000 -24737347 + AluSc SINE Alu 1 309 0 468 299 63 85 chr4 177591181 177591270 -24737077 + HAL1b LINE L1 330 419 -929 561 113 62 0 chr4 177591270 177591367 -24736980 + L1MB2 LINE L1 6069 6171 0 468 299 63 85 chr4 177591367 177591819 -24736528 + HAL1b LINE L1 419 682 -666 235 381 0 0 chr4 177593432 177593529 -24734818 - MIR SINE MIR -140 122 26 322 331 57 0 chr4 177594133 177594257 -24734090 - MIR SINE MIR -69 193 63 726 274 215 25 chr4 177594664 177595007 -24733340 + L2 LINE L2 2874 3293 -20 2336 101 0 0 chr4 177595007 177595305 -24733042 - AluSq SINE Alu -15 298 1 726 274 215 25 chr4 177595305 177595329 -24733018 + L2 LINE L2 3293 3311 -2 189 299 65 0 chr4 177595851 177595928 -24732419 - L2 LINE L2 -6 3307 3226 1380 110 6 0 chr4 177596505 177596687 -24731660 + AluSp SINE Alu 1 183 -130 773 101 0 9 chr4 177596771 177596880 -24731467 - AluSg/x SINE Alu -13 299 192 1830 89 8 0 chr4 177596983 177597218 -24731129 - AluSq SINE Alu -76 237 1 26 0 0 0 chr4 177597528 177597554 -24730793 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr4 177599054 177599092 -24729255 + AT_rich Low_complexity Low_complexity 1 38 0 840 289 71 33 chr4 177599116 177599186 -24729161 + L2 LINE L2 136 202 -3112 243 0 0 0 chr4 177599186 177599213 -24729134 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2156 104 0 0 chr4 177599215 177599494 -24728853 - AluSg SINE Alu -31 279 1 840 289 71 33 chr4 177599494 177599784 -24728563 + L2 LINE L2 202 513 -2801 1128 216 67 54 chr4 177599798 177600187 -24728160 + LTR16A1 LTR ERVL 63 456 -1 524 221 121 0 chr4 177600422 177600562 -24727785 - Zaphod DNA AcHobo -2 4029 3873 429 264 19 9 chr4 177600571 177600677 -24727670 - MER115 DNA AcHobo -535 158 52 275 330 203 10 chr4 177600902 177601302 -24727045 - L2 LINE L2 -1 3312 2836 1847 205 72 100 chr4 177602354 177603114 -24725233 + LTR68 LTR ERV1 1 739 -1 1909 109 57 18 chr4 177603434 177603717 -24724630 + AluSx SINE Alu 1 294 -18 537 264 91 29 chr4 177603728 177603936 -24724411 - MIR SINE MIR -34 228 8 602 271 64 35 chr4 177604587 177604790 -24723557 - MIR SINE MIR -40 222 14 2750 179 24 6 chr4 177605091 177605623 -24722724 + MER34 LTR ERV1 1 542 0 23 0 0 0 chr4 177606226 177606249 -24722098 + AT_rich Low_complexity Low_complexity 1 23 0 2080 43 0 0 chr4 177606506 177606759 -24721588 - L1PA5 LINE L1 0 6154 5902 1435 148 92 95 chr4 177606858 177607196 -24721151 - MER1B DNA MER1_type 0 337 1 28 48 0 0 chr4 177609182 177609224 -24719123 + AT_rich Low_complexity Low_complexity 1 42 0 1939 184 6 16 chr4 177609884 177610248 -24718099 + MLT1A1 LTR MaLR 4 363 -2 26 0 0 0 chr4 177610895 177610921 -24717426 + AT_rich Low_complexity Low_complexity 1 26 0 436 303 14 21 chr4 177610958 177611103 -24717244 + MIR SINE MIR 97 240 -22 539 0 74 0 chr4 177612195 177612276 -24716071 + (GGGAA)n Simple_repeat Simple_repeat 3 89 0 667 274 74 14 chr4 177612480 177612695 -24715652 + MIR SINE MIR 35 262 0 279 243 0 0 chr4 177613225 177613295 -24715052 - MIR SINE MIR -44 218 149 27 29 0 0 chr4 177613893 177613927 -24714420 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr4 177614162 177614187 -24714160 + AT_rich Low_complexity Low_complexity 1 25 0 607 216 32 156 chr4 177614461 177614743 -24713604 + MIR SINE MIR 14 260 -2 25 51 0 0 chr4 177614744 177614783 -24713564 + AT_rich Low_complexity Low_complexity 1 39 0 810 336 66 47 chr4 177615492 177615693 -24712654 + L2 LINE L2 2487 2683 -630 2345 64 0 10 chr4 177615693 177615988 -24712359 + AluY SINE Alu 1 292 -19 810 336 66 47 chr4 177615988 177616600 -24711747 + L2 LINE L2 2683 3312 -1 2267 116 3 0 chr4 177617243 177617553 -24710794 - AluSq SINE Alu -2 311 1 526 309 32 44 chr4 177617587 177617836 -24710511 + LTR33 LTR ERVL 3 248 -273 284 248 152 16 chr4 177617920 177618045 -24710302 + LTR33 LTR ERVL 378 519 -2 234 180 0 0 chr4 177618686 177618736 -24709611 - MER116 DNA Mariner -7 73 24 415 345 93 1 chr4 177618822 177619166 -24709181 - LTR16A LTR ERVL -28 422 3 340 118 29 0 chr4 177620102 177620170 -24708177 + (TATATG)n Simple_repeat Simple_repeat 2 71 0 250 192 41 14 chr4 177621165 177621238 -24707109 - MER116 DNA Mariner 0 80 6 23 0 0 0 chr4 177621989 177622012 -24706335 + AT_rich Low_complexity Low_complexity 1 23 0 248 289 55 23 chr4 177623701 177623829 -24704518 + LTR33 LTR ERVL 386 517 -4 10992 155 34 16 chr4 177623873 177623929 -24704418 + Tigger7 DNA MER2_type 35 88 -2399 1999 88 99 0 chr4 177623929 177624212 -24704135 + AluY SINE Alu 1 311 0 10992 155 34 16 chr4 177624212 177624914 -24703433 + Tigger7 DNA MER2_type 88 775 -1712 1957 127 10 26 chr4 177624914 177625221 -24703126 + AluSc SINE Alu 1 302 -7 10992 155 34 16 chr4 177625221 177626333 -24702014 + Tigger7 DNA MER2_type 775 1941 -546 567 139 0 0 chr4 177626343 177626429 -24701918 + AluSg SINE Alu 1 86 -224 776 177 15 0 chr4 177626439 177626569 -24701778 + Tigger7 DNA MER2_type 2356 2487 0 2113 134 0 0 chr4 177627230 177627536 -24700811 + AluSx SINE Alu 2 307 -5 305 327 139 40 chr4 177627571 177627895 -24700452 + L2 LINE L2 2915 3270 -2 460 126 32 0 chr4 177632101 177632196 -24696151 + (TGGA)n Simple_repeat Simple_repeat 2 99 0 204 191 21 21 chr4 177632197 177632244 -24696103 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 917 126 6 27 chr4 177632247 177632430 -24695917 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 432 97 0 0 chr4 177632450 177632512 -24695835 + (GGAA)n Simple_repeat Simple_repeat 4 65 0 210 118 0 0 chr4 177632610 177632644 -24695703 + (CATATA)n Simple_repeat Simple_repeat 5 38 0 360 0 0 0 chr4 177632750 177632790 -24695557 + (CA)n Simple_repeat Simple_repeat 2 41 0 477 0 0 0 chr4 177632798 177632851 -24695496 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 385 262 99 21 chr4 177633061 177633202 -24695145 - L1MEd LINE L1 -5965 154 3 24 0 0 0 chr4 177633311 177633335 -24695012 + AT_rich Low_complexity Low_complexity 1 24 0 351 288 82 29 chr4 177634122 177634292 -24694055 + L1ME LINE L1 5640 5818 -303 218 381 103 0 chr4 177635418 177635544 -24692803 + MIR SINE MIR 21 159 -103 1331 340 78 22 chr4 177635606 177636531 -24691816 + L2 LINE L2 1882 2858 -456 2204 80 0 83 chr4 177636713 177637050 -24691297 - AluY SINE Alu -2 309 1 273 306 81 12 chr4 177637308 177637556 -24690791 + L1ME LINE L1 5559 5823 -298 2067 130 16 0 chr4 177638429 177638737 -24689610 - AluSq SINE Alu 0 313 1 614 338 72 16 chr4 177638829 177639249 -24689098 + L3 LINE CR1 865 1369 -208 211 271 0 0 chr4 177639463 177639511 -24688836 + (TG)n Simple_repeat Simple_repeat 2 49 0 441 330 66 5 chr4 177639722 177639919 -24688428 + MIR SINE MIR 47 255 -7 725 105 48 24 chr4 177640405 177640529 -24687818 + L1PA13 LINE L1 6033 6159 -4 4874 183 29 29 chr4 177640613 177640874 -24687473 + L1MA7 LINE L1 4947 5207 -1084 2073 124 0 3 chr4 177640874 177641194 -24687153 - AluSx SINE Alu 0 319 1 4874 183 29 29 chr4 177641194 177641653 -24686694 + L1MA7 LINE L1 5207 5665 -626 2768 121 29 0 chr4 177641653 177642074 -24686273 + MER57B LTR ERV1 2 434 0 4874 183 29 29 chr4 177642074 177642680 -24685667 + L1MA7 LINE L1 5665 6288 -3 26 0 0 0 chr4 177642680 177642706 -24685641 + AT_rich Low_complexity Low_complexity 1 26 0 251 140 20 0 chr4 177642989 177643039 -24685308 + (TTAAA)n Simple_repeat Simple_repeat 5 55 0 645 133 0 0 chr4 177643267 177643365 -24684982 - AluSc SINE Alu -12 297 200 1745 119 4 0 chr4 177643366 177643602 -24684745 - AluSc SINE Alu -72 237 1 574 47 35 0 chr4 177643648 177643733 -24684614 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 251 140 20 0 chr4 177644282 177644332 -24684015 + (TTAAA)n Simple_repeat Simple_repeat 5 55 0 637 134 0 0 chr4 177644560 177644657 -24683690 - AluSc SINE Alu -13 296 200 1745 119 4 0 chr4 177644658 177644894 -24683453 - AluSc SINE Alu -72 237 1 676 92 13 33 chr4 177644940 177645093 -24683254 + (GAAA)n Simple_repeat Simple_repeat 1 150 0 1438 171 113 7 chr4 177645327 177645655 -24682692 + AluSg SINE Alu 1 357 0 279 245 29 39 chr4 177646062 177646164 -24682183 + L1 LINE L1 2268 2368 -3778 2382 86 7 0 chr4 177646568 177646872 -24681475 + AluSc SINE Alu 1 306 -3 1011 286 89 28 chr4 177646891 177647938 -24680409 + L1 LINE L1 2857 3967 -2179 2165 123 0 0 chr4 177647947 177648240 -24680107 + AluSg SINE Alu 1 293 -17 261 0 0 0 chr4 177648268 177648297 -24680050 + (TG)n Simple_repeat Simple_repeat 2 30 0 821 188 49 59 chr4 177648318 177648605 -24679742 + L1MC4a LINE L1 6149 6432 -1376 796 193 75 16 chr4 177648600 177648787 -24679560 + L1PB4 LINE L1 5957 6154 -2 * 481 268 7 7 chr4 177648796 177648938 -24679409 + L1MC4a LINE L1 6418 6559 -1249 * 3362 217 164 10 chr4 177648937 177649976 -24678371 + L1MC4a LINE L1 6192 6356 -3 497 226 31 19 chr4 177650316 177650475 -24677872 - L1MB8 LINE L1 0 6178 6018 2457 67 0 0 chr4 177650708 177651005 -24677342 + AluY SINE Alu 1 297 -14 6261 137 56 28 chr4 177651180 177651389 -24676958 + Tigger3b DNA MER2_type 2 204 -2824 2188 123 0 0 chr4 177651389 177651691 -24676656 + AluSg SINE Alu 1 302 -8 6261 137 56 28 chr4 177651691 177652106 -24676241 + Tigger3b DNA MER2_type 204 606 -2422 1870 178 0 3 chr4 177652106 177652410 -24675937 + AluJb SINE Alu 1 303 -9 6261 137 56 28 chr4 177652410 177652980 -24675367 + Tigger3b DNA MER2_type 606 1231 0 33 25 0 0 chr4 177653173 177653213 -24675134 + AT_rich Low_complexity Low_complexity 1 40 0 244 167 60 67 chr4 177653215 177653365 -24674982 + (TTATA)n Simple_repeat Simple_repeat 1 149 0 482 317 62 37 chr4 177653662 177653905 -24674442 + MIR SINE MIR 2 250 -12 28 29 0 0 chr4 177655044 177655079 -24673268 + AT_rich Low_complexity Low_complexity 1 35 0 1001 151 0 0 chr4 177655150 177655296 -24673051 - FRAM SINE Alu -30 146 1 255 244 22 11 chr4 177655499 177655589 -24672758 + L1ME4a LINE L1 5982 6072 -49 23 0 0 0 chr4 177655616 177655639 -24672708 + AT_rich Low_complexity Low_complexity 1 23 0 264 162 42 21 chr4 177656310 177656452 -24671895 + (TA)n Simple_repeat Simple_repeat 2 146 0 8973 150 79 10 chr4 177656473 177658076 -24670271 + Tigger2 DNA MER2_type 61 1774 -944 289 119 119 0 chr4 177658069 177658128 -24670219 + Tigger2 DNA MER2_type 2431 2496 -222 * 309 327 108 42 chr4 177658137 177658351 -24669996 - L2 LINE L2 -473 2841 2614 412 250 0 0 chr4 177658382 177658486 -24669861 + U13 snRNA snRNA 1 104 0 29 28 0 0 chr4 177658495 177658531 -24669816 + AT_rich Low_complexity Low_complexity 1 36 0 393 243 0 0 chr4 177658531 177658605 -24669742 + Tigger2 DNA MER2_type 2635 2708 -10 1120 335 75 53 chr4 177659083 177660297 -24668050 - L2 LINE L2 -5 3267 2012 603 103 48 7 chr4 177660337 177660482 -24667865 + (TAGA)n Simple_repeat Simple_repeat 2 152 0 985 227 76 0 chr4 177661405 177661656 -24666691 - MER119 DNA MER1_type -3 580 311 210 37 0 0 chr4 177662035 177662062 -24666285 + (CA)n Simple_repeat Simple_repeat 2 28 0 233 288 19 77 chr4 177662350 177662725 -24665622 + HAL1 LINE L1 1120 1472 -1035 622 308 4 40 chr4 177662731 177662958 -24665389 + MIR SINE MIR 15 233 -29 246 302 47 30 chr4 177662972 177663141 -24665206 + HAL1 LINE L1 1513 1684 -823 4787 59 0 0 chr4 177663141 177663736 -24664611 - L1PA8 LINE L1 -14 6158 5564 366 266 7 49 chr4 177664091 177664234 -24664113 + HAL1b LINE L1 770 906 -442 912 202 75 75 chr4 177664265 177664524 -24663823 + L1MC5 LINE L1 7039 7300 -661 2010 111 7 0 chr4 177664524 177664804 -24663543 + AluSq SINE Alu 30 311 -2 912 202 75 75 chr4 177664804 177664906 -24663441 + L1MC5 LINE L1 7299 7400 -561 226 113 19 19 chr4 177664910 177664963 -24663384 + (CA)n Simple_repeat Simple_repeat 2 54 0 368 240 0 66 chr4 177665100 177665221 -24663126 + GA-rich Low_complexity Low_complexity 3 115 0 1041 227 149 89 chr4 177665332 177665795 -24662552 + MLT1E LTR MaLR 61 551 -42 275 163 0 0 chr4 177665831 177665880 -24662467 + MLT1J1 LTR MaLR 359 407 -39 1747 143 20 0 chr4 177666630 177666924 -24661423 + L1MA6 LINE L1 6001 6300 0 2013 189 31 58 chr4 177667832 177668351 -24659996 + MLT1D LTR MaLR 1 505 0 300 314 124 15 chr4 177668433 177668570 -24659777 - MIR SINE MIR -13 249 98 181 268 0 0 chr4 177668875 177668916 -24659431 + L2 LINE L2 774 814 -2500 198 128 0 0 chr4 177669559 177669598 -24658749 + (CAATT)n Simple_repeat Simple_repeat 3 41 0 314 355 130 19 chr4 177669954 177670323 -24658024 + L2 LINE L2 2364 2773 -541 1353 211 35 16 chr4 177670367 177670685 -24657662 - LTR53 LTR ERVL -4 515 192 5998 205 24 17 chr4 177671129 177672333 -24656014 - HERVL74 LTR ERVL -2376 3309 2098 1900 209 60 22 chr4 177672376 177672906 -24655441 - HERVL74 LTR ERVL -1418 2138 1593 271 196 304 7 chr4 177674124 177674262 -24654085 - L1ME LINE L1 -345 5776 5598 2197 92 0 0 chr4 177674268 177674587 -24653760 - AluSx SINE Alu 0 319 1 260 30 30 0 chr4 177674799 177674832 -24653515 + U2 snRNA snRNA 1 34 -154 * 295 190 0 0 chr4 177674829 177674887 -24653460 + MLT1F LTR MaLR 485 542 0 880 197 117 10 chr4 177675375 177675718 -24652629 - MER74C LTR ERVL -80 478 12 8955 94 6 8 chr4 177675729 177677821 -24650526 - L1PA8 LINE L1 -1 6486 4399 479 117 0 13 chr4 177677821 177677898 -24650449 - L1PA8 LINE L1 -2287 4174 4099 * 10429 138 26 10 chr4 177677887 177679530 -24648817 - L1PA8 LINE L1 -4789 1672 5 538 188 0 0 chr4 177679568 177679669 -24648678 - FLAM_A SINE Alu -32 110 10 192 77 0 0 chr4 177679957 177679983 -24648364 + (T)n Simple_repeat Simple_repeat 1 26 0 2466 71 3 3 chr4 177680602 177680910 -24647437 + AluSp SINE Alu 1 308 -5 2043 61 21 0 chr4 177681118 177681398 -24646949 + L1MA2 LINE L1 6019 6304 0 24 0 0 0 chr4 177681398 177681422 -24646925 + AT_rich Low_complexity Low_complexity 1 24 0 31 44 0 0 chr4 177681484 177681529 -24646818 + AT_rich Low_complexity Low_complexity 1 45 0 378 264 30 132 chr4 177681778 177682112 -24646235 - HAL1 LINE L1 -2108 399 100 21 0 0 0 chr4 177682573 177682594 -24645753 + AT_rich Low_complexity Low_complexity 1 21 0 215 250 42 0 chr4 177682793 177682841 -24645506 - L2 LINE L2 -2 3270 3221 1474 67 26 5 chr4 177682869 177683062 -24645285 + MER30 DNA MER1_type 1 197 -33 21 0 0 0 chr4 177684265 177684286 -24644061 + AT_rich Low_complexity Low_complexity 1 21 0 1641 309 140 31 chr4 177684897 177686284 -24642063 + L2 LINE L2 1670 3293 -20 4893 181 43 6 chr4 177687006 177687975 -24640372 - L1MC1 LINE L1 0 6333 5329 31 68 0 0 chr4 177687985 177688044 -24640303 + AT_rich Low_complexity Low_complexity 1 59 0 5242 136 21 1 chr4 177688375 177689184 -24639163 - L1PA15 LINE L1 -6 6810 5986 * 18751 83 1 13 chr4 177689177 177691781 -24636566 - L1P LINE L1 -3091 3055 483 17105 54 2 0 chr4 177691781 177694727 -24633620 + L1PA5 LINE L1 3201 6152 -2 12852 207 25 13 chr4 177694727 177695679 -24632668 - L1PA15 LINE L1 -795 6002 5063 1928 110 64 4 chr4 177695679 177695960 -24632387 - AluSq SINE Alu -15 298 1 12852 207 25 13 chr4 177695960 177697918 -24630429 - L1PA15 LINE L1 -1734 5063 3130 1378 147 173 67 chr4 177697918 177698236 -24630111 + MSTA LTR MaLR 1 369 -59 2025 124 0 30 chr4 177698236 177698580 -24629767 + AluSq SINE Alu 1 313 0 1378 147 173 67 chr4 177698580 177698648 -24629699 + MSTA LTR MaLR 369 428 0 12852 207 25 13 chr4 177698648 177698696 -24629651 - L1PA15 LINE L1 -3667 3130 3084 1593 157 0 0 chr4 177698696 177698925 -24629422 - AluSq SINE Alu -84 229 1 12852 207 25 13 chr4 177698925 177699191 -24629156 - L1PA15 LINE L1 -3713 3084 2772 994 221 8 0 chr4 177699202 177699456 -24628891 - L1PA15 LINE L1 -4721 2066 1811 * 3726 210 10 29 chr4 177699445 177700697 -24627650 - L1PA13 LINE L1 -4023 3561 2319 329 310 89 19 chr4 177701599 177701857 -24626490 - L1PA13 LINE L1 -7299 282 7 1709 212 5 37 chr4 177702211 177702588 -24625759 - MLT2B1 LTR ERVL 0 520 156 4218 172 78 27 chr4 177702589 177702878 -24625469 - L1MCa LINE L1 -5436 990 717 1981 190 0 3 chr4 177702878 177703226 -24625121 + MER7A DNA MER2_type 1 345 -1 4218 172 78 27 chr4 177703226 177703860 -24624487 - L1MCa LINE L1 -5709 717 20 554 236 34 6 chr4 177703861 177704039 -24624308 - L1MEc LINE L1 -4002 2394 2212 21 0 0 0 chr4 177704047 177704068 -24624279 + AT_rich Low_complexity Low_complexity 1 21 0 205 263 0 0 chr4 177704731 177704788 -24623559 + T-rich Low_complexity Low_complexity 2 58 0 1318 191 76 48 chr4 177705026 177705381 -24622966 - MLT1A1 LTR MaLR 0 365 1 463 316 66 15 chr4 177705560 177705756 -24622591 - MIR SINE MIR -23 239 34 23 33 0 0 chr4 177705988 177706018 -24622329 + AT_rich Low_complexity Low_complexity 1 30 0 2320 70 40 17 chr4 177706220 177706522 -24621825 - AluSg1 SINE Alu 0 309 1 299 342 95 62 chr4 177706935 177707643 -24620704 + L2 LINE L2 2235 2965 -349 195 258 0 61 chr4 177707895 177707961 -24620386 + L2 LINE L2 3251 3312 -1 749 303 73 9 chr4 177709358 177709691 -24618656 + L1MA6 LINE L1 522 1287 -6279 3119 227 58 17 chr4 177710328 177711618 -24616729 + L1MA6 LINE L1 2290 3620 -3945 1099 172 5 39 chr4 177711629 177711833 -24616514 + AluJo SINE Alu 93 289 -23 10276 198 37 30 chr4 177711854 177712261 -24616086 + L1MA6 LINE L1 3643 4046 -3673 871 138 0 0 chr4 177712261 177712384 -24615963 - FLAM_C SINE Alu -9 124 2 10276 198 37 30 chr4 177712384 177714892 -24613455 + L1MA6 LINE L1 4046 6537 -1182 1980 187 28 14 chr4 177714892 177715251 -24613096 + THE1B LTR MaLR 1 364 0 12142 89 1 0 chr4 177715251 177716829 -24611518 + THE1B-int LTR MaLR 1 1580 0 2106 135 63 14 chr4 177716829 177717176 -24611171 + THE1B LTR MaLR 1 364 0 10276 198 37 30 chr4 177717176 177718433 -24609914 + L1MA6 LINE L1 6536 7709 -10 23 68 0 0 chr4 177718455 177718499 -24609848 + AT_rich Low_complexity Low_complexity 1 44 0 59 46 0 0 chr4 177718753 177718840 -24609507 + AT_rich Low_complexity Low_complexity 1 87 0 300 208 58 0 chr4 177719173 177719293 -24609054 + (TA)n Simple_repeat Simple_repeat 1 127 0 1780 171 0 3 chr4 177720152 177720444 -24607903 + AluJb SINE Alu 1 291 -21 205 152 0 0 chr4 177720447 177720480 -24607867 + G-rich Low_complexity Low_complexity 1 33 0 742 230 42 39 chr4 177720480 177720815 -24607532 + Charlie2 DNA MER1_type 2524 2859 -3 230 264 109 60 chr4 177720815 177721014 -24607333 - Charlie7 DNA MER1_type -2403 209 1 225 333 25 0 chr4 177721627 177721708 -24606639 + MIR SINE MIR 178 260 -2 298 293 10 10 chr4 177721742 177721841 -24606506 - MER117 DNA MER1_type -82 115 17 2499 205 17 12 chr4 177722346 177723229 -24605118 + L1MA5 LINE L1 4979 5870 -430 723 194 10 44 chr4 177723232 177723438 -24604909 + L1MA5 LINE L1 6079 6277 -23 2138 218 84 29 chr4 177723611 177724102 -24604245 + L1MCa LINE L1 181 718 -5708 1456 257 0 3 chr4 177724102 177724448 -24603899 - MER7A DNA MER2_type -3 343 1 2138 218 84 29 chr4 177724448 177724608 -24603739 + L1MCa LINE L1 718 868 -5558 488 357 42 23 chr4 177724867 177725130 -24603217 + HAL1 LINE L1 1228 1495 -1012 637 277 77 5 chr4 177725143 177725363 -24602984 + MIR SINE MIR 13 248 -14 21 36 0 0 chr4 177725714 177725742 -24602605 + AT_rich Low_complexity Low_complexity 1 28 0 336 148 0 0 chr4 177725778 177725839 -24602508 + MLT1A2 LTR MaLR 9 69 -305 4393 89 83 56 chr4 177725943 177726682 -24601665 - L1PA13 LINE L1 -39 6124 5359 1814 161 7 0 chr4 177726682 177726986 -24601361 - AluSx SINE Alu -6 306 1 4393 89 83 56 chr4 177726986 177727065 -24601282 - L1PA13 LINE L1 -804 5359 5284 1550 167 20 0 chr4 177727787 177728081 -24600266 - L1MA6 LINE L1 0 6300 6001 5677 185 19 20 chr4 177728986 177730158 -24598189 + L1M1 LINE L1 27 1196 -6369 734 206 5 39 chr4 177730263 177730467 -24597880 + AluSg/x SINE Alu 98 294 -16 29 28 0 0 chr4 177732908 177732944 -24595403 + AT_rich Low_complexity Low_complexity 1 36 0 2982 230 10 31 chr4 177733748 177734872 -24593475 + L1PA13 LINE L1 1550 2660 -4137 335 298 133 48 chr4 177734979 177735311 -24593036 + L1ME4a LINE L1 5757 6116 -5 384 361 96 11 chr4 177735958 177736218 -24592129 + L2 LINE L2 133 414 -2900 1468 179 77 19 chr4 177736682 177737007 -24591340 + MLT1A1 LTR MaLR 1 344 -21 345 192 10 39 chr4 177737553 177737657 -24590690 + FLAM_A SINE Alu 10 110 -23 7946 188 25 13 chr4 177737695 177739343 -24589004 + L1P3 LINE L1 5 1672 -4789 486 167 35 18 chr4 177739461 177739575 -24588772 + L1MA5 LINE L1 5755 5870 -430 * 674 209 24 66 chr4 177739572 177739783 -24588564 + L1MA5 LINE L1 6076 6277 -23 345 344 0 0 chr4 177739785 177739916 -24588431 + AluJb SINE Alu 3 133 -169 753 216 5 10 chr4 177740003 177740197 -24588150 - L1M4 LINE L1 -3319 2827 2635 3738 117 97 53 chr4 177740761 177741538 -24586809 - L1PA13 LINE L1 -2 6161 5351 230 276 13 13 chr4 177741673 177741749 -24586598 - MER117 DNA MER1_type -105 92 17 539 224 62 36 chr4 177742176 177742368 -24585979 + MER3 DNA MER1_type 8 204 -5 909 281 9 13 chr4 177742384 177742615 -24585732 - MIR SINE MIR -24 238 9 528 272 48 57 chr4 177743490 177743718 -24584629 - MIR SINE MIR -14 248 23 284 234 217 71 chr4 177744525 177744625 -24583722 - MER113 DNA MER1_type? -7 514 430 1982 127 3 7 chr4 177744625 177744959 -24583388 + AluSx SINE Alu 1 333 0 284 234 217 71 chr4 177744959 177745194 -24583153 - MER113 DNA MER1_type? -91 430 129 298 319 125 25 chr4 177746341 177746501 -24581846 + L2 LINE L2 2623 2798 -516 209 303 20 61 chr4 177746646 177746745 -24581602 + MIR SINE MIR 45 139 -123 2154 135 87 18 chr4 177747877 177748270 -24580077 + MSTA LTR MaLR 9 428 0 3562 168 36 1 chr4 177748275 177748936 -24579411 + MSTA-int LTR MaLR 6 689 -962 834 136 34 0 chr4 177748936 177749054 -24579293 - FRAM SINE Alu -54 122 1 23 68 0 0 chr4 177749087 177749131 -24579216 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr4 177749193 177749214 -24579133 + AT_rich Low_complexity Low_complexity 1 21 0 280 301 75 25 chr4 177749250 177749489 -24578858 + HAL1b LINE L1 339 589 -759 27 49 0 0 chr4 177749751 177749792 -24578555 + AT_rich Low_complexity Low_complexity 1 41 0 280 27 27 0 chr4 177749982 177750019 -24578328 + U2 snRNA snRNA 1 38 -150 37 0 0 0 chr4 177750091 177750128 -24578219 + AT_rich Low_complexity Low_complexity 1 37 0 323 348 140 34 chr4 177750523 177750759 -24577588 - MIR SINE MIR 0 262 2 1338 201 36 59 chr4 177750930 177751372 -24576975 - LTR56 LTR ERV1 0 445 14 312 232 0 0 chr4 177751372 177751428 -24576919 + AluJo SINE Alu 1 56 -245 3206 86 14 5 chr4 177751428 177751868 -24576479 + MLT2A1 LTR ERVL 1 444 0 1481 171 8 23 chr4 177751868 177752126 -24576221 + AluJo SINE Alu 52 305 -7 3759 180 99 16 chr4 177752614 177753402 -24574945 + MER21B LTR ERV1 7 859 -4 186 337 45 22 chr4 177753438 177753527 -24574820 - L2 LINE L2 -31 3241 3151 354 205 0 0 chr4 177753563 177753646 -24574701 + GA-rich Low_complexity Low_complexity 4 86 0 451 244 40 10 chr4 177753669 177753874 -24574473 - MER101 LTR ERV1 -138 336 177 310 268 130 32 chr4 177754049 177754172 -24574175 - MIR SINE MIR -3 259 125 227 279 15 0 chr4 177754211 177754279 -24574068 - MIR SINE MIR -128 134 66 1728 212 130 9 chr4 177754700 177755163 -24573184 + MER101B LTR ERV1 1 519 -51 25 0 0 0 chr4 177756028 177756053 -24572294 + AT_rich Low_complexity Low_complexity 1 25 0 557 63 0 13 chr4 177756165 177756244 -24572103 + (GGAA)n Simple_repeat Simple_repeat 2 79 0 1212 248 88 10 chr4 177757022 177757429 -24570918 - MER21B LTR ERV1 -72 791 353 420 232 49 28 chr4 177757476 177757618 -24570729 - MER21B LTR ERV1 -617 246 102 407 271 0 0 chr4 177757661 177757757 -24570590 - MER21B LTR ERV1 -767 96 1 198 269 202 10 chr4 177757843 177757947 -24570400 + MIR SINE MIR 138 261 -1 3108 77 41 70 chr4 177758844 177758923 -24569424 + L1PA13 LINE L1 5284 5364 -799 1906 142 13 3 chr4 177758923 177759226 -24569121 + AluSx SINE Alu 1 306 -6 3108 77 41 70 chr4 177759226 177759704 -24568643 + L1PA13 LINE L1 5364 5825 -338 601 188 53 0 chr4 177759804 177759974 -24568373 + L1M1 LINE L1 3064 3242 -4323 * 3083 164 47 7 chr4 177759967 177760581 -24567766 + L1MA3 LINE L1 5591 6229 -76 559 150 38 53 chr4 177760620 177760753 -24567594 + L1MA3 LINE L1 6173 6303 -2 25 51 0 0 chr4 177761125 177761164 -24567183 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr4 177761331 177761352 -24566995 + AT_rich Low_complexity Low_complexity 1 21 0 543 247 210 5 chr4 177761410 177761596 -24566751 + MIR SINE MIR 18 241 -21 661 194 0 0 chr4 177761951 177762059 -24566288 + FLAM_A SINE Alu 1 108 -34 879 323 91 29 chr4 177762455 177763261 -24565086 + L2 LINE L2 2456 3313 0 2290 107 0 0 chr4 177763582 177763881 -24564466 - AluSq SINE Alu -14 299 1 752 282 100 30 chr4 177764244 177764712 -24563635 + LTR33 LTR ERVL 21 521 0 417 39 0 0 chr4 177765968 177766019 -24562328 + (CA)n Simple_repeat Simple_repeat 1 51 0 348 24 0 0 chr4 177766113 177766154 -24562193 + (CA)n Simple_repeat Simple_repeat 2 42 0 480 77 0 0 chr4 177766156 177766221 -24562126 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 479 263 13 13 chr4 177766427 177766579 -24561768 - L1MEd LINE L1 -5965 154 3 204 345 0 0 chr4 177766670 177766725 -24561622 + polypurine Low_complexity Low_complexity 2 56 0 21 36 0 0 chr4 177766729 177766757 -24561590 + AT_rich Low_complexity Low_complexity 1 28 0 2143 108 17 0 chr4 177766891 177767178 -24561169 + AluSx SINE Alu 1 292 -20 183 296 0 0 chr4 177768237 177768281 -24560066 - L2 LINE L2 -7 3265 3222 1670 143 25 79 chr4 177768291 177768483 -24559864 - AluJo SINE Alu -14 298 128 513 0 0 0 chr4 177768483 177768540 -24559807 + (TG)n Simple_repeat Simple_repeat 2 58 0 1670 143 25 79 chr4 177768540 177768662 -24559685 - AluJo SINE Alu -184 128 1 195 302 86 52 chr4 177770006 177770122 -24558225 - L2 LINE L2 -10 3262 3143 614 241 104 98 chr4 177770299 177770759 -24557588 + MLT1J LTR MaLR 1 463 -48 2147 112 7 23 chr4 177771039 177771344 -24557003 + AluSx SINE Alu 1 300 -12 563 280 34 58 chr4 177771605 177771749 -24556598 + LTR33 LTR ERVL 195 341 -180 2091 242 31 12 chr4 177771749 177772258 -24556089 - LTR40a LTR ERVL 0 519 1 563 280 34 58 chr4 177772258 177772438 -24555909 + LTR33 LTR ERVL 341 511 -10 208 317 98 24 chr4 177772443 177772566 -24555781 + MIR SINE MIR 105 236 -26 2056 126 0 17 chr4 177774733 177775034 -24553313 - AluSx SINE Alu -16 296 1 2160 153 41 19 chr4 177775216 177775496 -24552851 + MSTA LTR MaLR 1 294 -134 2323 106 0 3 chr4 177775496 177775807 -24552540 + AluSq SINE Alu 1 310 -3 2160 153 41 19 chr4 177775807 177775945 -24552402 + MSTA LTR MaLR 294 428 0 494 190 10 10 chr4 177776579 177776679 -24551668 + MER58 DNA MER1_type 2319 2418 -2 1802 37 0 0 chr4 177777080 177777294 -24551053 + L1PA3 LINE L1 5939 6152 -3 285 162 27 14 chr4 177777808 177777882 -24550465 + (TA)n Simple_repeat Simple_repeat 2 76 0 26 0 0 0 chr4 177777894 177777920 -24550427 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr4 177778155 177778188 -24550159 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr4 177779099 177779130 -24549217 + AT_rich Low_complexity Low_complexity 1 31 0 247 344 60 7 chr4 177779429 177779711 -24548636 - L1MDa LINE L1 -4583 1799 1503 316 224 51 61 chr4 177779788 177779886 -24548461 - L1MDa LINE L1 -5023 1361 1265 7867 207 37 46 chr4 177779907 177781805 -24546542 + ERVL-C1 LTR ERVL 1267 3147 -2617 4404 183 10 22 chr4 177781818 177782709 -24545638 + ERVL-C1 LTR ERVL 4359 5238 -526 1253 196 19 48 chr4 177782711 177783027 -24545320 + MLT1C LTR MaLR 6 312 -155 1426 169 24 28 chr4 177783030 177783320 -24545027 + MER49 LTR ERV1 1 289 -634 229 204 0 20 chr4 177783340 177783389 -24544958 + MER4E LTR ERV1 115 162 -617 1323 206 30 42 chr4 177783400 177783441 -24544906 + MER4D LTR ERV1 547 587 -316 2158 124 0 10 chr4 177783441 177783755 -24544592 - AluY SINE Alu 0 311 1 1323 206 30 42 chr4 177783755 177784048 -24544299 + MER4D LTR ERV1 587 877 -26 362 158 26 13 chr4 177784058 177784134 -24544213 + MER4D LTR ERV1 827 903 0 594 211 15 8 chr4 177784148 177784281 -24544066 + MLT1C LTR MaLR 326 459 -8 1817 211 95 9 chr4 177784290 177784754 -24543593 + ERVL-C1 LTR ERVL 5254 5757 -7 1379 234 5 49 chr4 177784757 177785168 -24543179 + MLT2C1 LTR ERVL 5 397 0 477 278 40 33 chr4 177785168 177785441 -24542906 + L1ME3 LINE L1 4561 4835 -1311 392 164 195 0 chr4 177785513 177785641 -24542706 + L1ME3 LINE L1 5320 5472 -692 870 235 0 6 chr4 177785641 177785824 -24542523 + AluJo SINE Alu 118 299 -13 266 271 5 47 chr4 177785825 177786017 -24542330 + L1ME3 LINE L1 5498 5712 -450 257 344 48 65 chr4 177786099 177786285 -24542062 + L2 LINE L2 2889 3071 -201 672 246 58 71 chr4 177786383 177786794 -24541553 + L1ME3 LINE L1 5753 6158 -4 663 183 9 0 chr4 177787285 177787400 -24540947 + FLAM_A SINE Alu 1 116 -17 40907 33 22 5 chr4 177787572 177793621 -24534726 + L1PA2 LINE L1 1 6152 -3 389 256 98 67 chr4 177793781 177794016 -24534331 + L1ME4a LINE L1 5603 5850 -271 213 65 0 0 chr4 177794016 177794047 -24534300 + (CATAT)n Simple_repeat Simple_repeat 3 33 0 389 256 98 67 chr4 177794047 177794108 -24534239 + L1ME4a LINE L1 5850 5908 -213 1710 181 3 3 chr4 177794502 177794827 -24533520 + HUERS-P1 LTR ERV1 5906 6230 -33 3207 8 16 0 chr4 177794827 177795211 -24533136 + L1HS LINE L1 5766 6155 0 273 109 0 0 chr4 177795214 177795260 -24533087 + (A)n Simple_repeat Simple_repeat 1 46 0 224 123 55 27 chr4 177795331 177795404 -24532943 + A-rich Low_complexity Low_complexity 2 76 0 3693 104 0 58 chr4 177795431 177796054 -24532293 + LTR8 LTR ERV1 1 587 -104 1094 314 131 55 chr4 177796099 177796214 -24532133 + L2 LINE L2 1783 1888 -1426 1759 166 32 0 chr4 177796214 177796491 -24531856 + AluJo SINE Alu 1 286 -26 1094 314 131 55 chr4 177796491 177797465 -24530882 + L2 LINE L2 1888 2955 -359 190 262 119 95 chr4 177797626 177797752 -24530595 + L2 LINE L2 3175 3303 -10 498 265 157 62 chr4 177797792 177798031 -24530316 + L1ME4a LINE L1 5573 5788 -333 828 107 0 0 chr4 177798031 177798152 -24530195 + L1MA2 LINE L1 6184 6304 0 498 265 157 62 chr4 177798152 177798365 -24529982 + L1ME4a LINE L1 5788 6068 -53 517 310 91 24 chr4 177799188 177799475 -24528872 + L3 LINE CR1 1101 1406 -171 327 263 165 23 chr4 177799976 177800109 -24528238 + MIR SINE MIR 111 262 0 503 329 71 0 chr4 177800356 177800526 -24527821 - L2 LINE L2 -865 2449 2268 27 0 0 0 chr4 177801598 177801625 -24526722 + AT_rich Low_complexity Low_complexity 1 27 0 702 301 44 0 chr4 177801657 177801906 -24526441 - MIR SINE MIR 0 262 3 273 206 0 124 chr4 177802232 177802329 -24526018 + MLT1E LTR MaLR 1 84 -466 29 28 0 0 chr4 177803767 177803803 -24524544 + AT_rich Low_complexity Low_complexity 1 36 0 414 285 186 14 chr4 177804114 177804335 -24524012 + HAL1 LINE L1 44 302 -2205 501 327 82 13 chr4 177804965 177805285 -24523062 + L2 LINE L2 2874 3313 0 2128 120 13 0 chr4 177805751 177806050 -24522297 + AluSp SINE Alu 1 303 -10 224 289 103 41 chr4 177806128 177806225 -24522122 - L2 LINE L2 0 3272 3170 2195 110 0 0 chr4 177806403 177806695 -24521652 + AluSx SINE Alu 1 292 -20 1841 142 3 20 chr4 177807104 177807407 -24520940 + AluSg SINE Alu 3 300 -10 363 256 126 62 chr4 177808234 177808672 -24519675 + L1ME4a LINE L1 5588 6053 -68 496 331 96 11 chr4 177809362 177809622 -24518725 + L2 LINE L2 133 414 -2900 1680 163 77 19 chr4 177810086 177810411 -24517936 + MLT1A1 LTR MaLR 1 344 -21 257 338 81 22 chr4 177810440 177810576 -24517771 - L2 LINE L2 -2 3270 3127 7010 158 30 115 chr4 177810927 177812685 -24515662 + MER52A LTR ERV1 8 1534 -64 325 164 0 45 chr4 177812685 177812752 -24515595 + MER52A LTR ERV1 1692 1755 0 4726 82 0 12 chr4 177813043 177813692 -24514655 - L1PA13 LINE L1 -1 6162 5522 2771 137 78 25 chr4 177814222 177814791 -24513556 + MER4B LTR ERV1 1 765 -14 685 276 35 25 chr4 177815109 177815308 -24513039 - MIR SINE MIR -28 234 34 576 118 0 0 chr4 177815319 177815404 -24512943 - AluJ/FRAM SINE Alu -9 303 219 574 293 105 0 chr4 177815679 177815860 -24512487 - MIR SINE MIR -49 213 14 24 0 0 0 chr4 177816102 177816126 -24512221 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 177817314 177817339 -24511008 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr4 177817500 177817536 -24510811 + AT_rich Low_complexity Low_complexity 1 36 0 2008 153 3 0 chr4 177818207 177818502 -24509845 - AluSx SINE Alu -16 296 1 27 0 0 0 chr4 177818731 177818758 -24509589 + AT_rich Low_complexity Low_complexity 1 27 0 234 204 0 20 chr4 177819348 177819397 -24508950 + L2 LINE L2 3174 3221 -92 306 275 94 7 chr4 177820717 177820855 -24507492 + MER103 DNA DNA 16 165 -1 189 299 21 72 chr4 177821007 177821104 -24507243 + MIR SINE MIR 109 200 -62 413 214 60 34 chr4 177821420 177821537 -24506810 + MIR SINE MIR 108 227 -35 783 280 44 8 chr4 177822955 177823205 -24505142 + MIR SINE MIR 3 261 -1 265 378 33 26 chr4 177823204 177823355 -24504992 - L2 LINE L2 -6 3266 3115 * 241 353 60 15 chr4 177823605 177823738 -24504609 - L2 LINE L2 -482 2832 2694 17275 133 47 73 chr4 177824355 177827658 -24500689 + L1M1 LINE L1 27 3244 -4321 3729 130 47 7 chr4 177827649 177828263 -24500084 + L1MA3 LINE L1 5591 6229 -76 * 627 143 45 45 chr4 177828302 177828435 -24499912 + L1MA3 LINE L1 6173 6305 0 572 271 77 6 chr4 177828732 177828902 -24499445 - L2 LINE L2 -865 2449 2268 201 175 0 0 chr4 177829127 177829167 -24499180 + T-rich Low_complexity Low_complexity 1 40 0 441 0 0 0 chr4 177829236 177829285 -24499062 + (TG)n Simple_repeat Simple_repeat 2 50 0 204 314 100 0 chr4 177829466 177829536 -24498811 + MIR SINE MIR 26 102 -160 424 312 134 27 chr4 177830392 177830914 -24497433 + L1ME4a LINE L1 5333 5910 -211 1804 171 0 17 chr4 177830914 177831212 -24497135 + AluJb SINE Alu 3 295 -17 426 85 0 0 chr4 177831241 177831300 -24497047 + (CA)n Simple_repeat Simple_repeat 2 60 0 287 408 0 0 chr4 177831638 177831768 -24496579 - L3 LINE CR1 -454 1123 994 22 35 0 0 chr4 177831849 177831878 -24496469 + AT_rich Low_complexity Low_complexity 1 29 0 5466 84 11 0 chr4 177832070 177832805 -24495542 + L1PA10 LINE L1 5421 6163 -5 845 118 0 0 chr4 177833191 177833301 -24495046 + FLAM_C SINE Alu 1 110 -33 207 0 0 0 chr4 177833304 177833327 -24495020 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 2036 109 0 14 chr4 177833457 177833740 -24494607 + AluSx SINE Alu 1 279 -33 483 252 16 16 chr4 177834024 177834147 -24494200 - AluJb SINE Alu -187 125 3 1005 161 5 47 chr4 177834149 177834360 -24493987 - L1MA5 LINE L1 -23 6277 6076 * 3422 175 14 9 chr4 177834357 177835514 -24492833 - L1MA5 LINE L1 -430 5870 4705 766 254 94 25 chr4 177835516 177835921 -24492426 + L1ME2 LINE L1 2865 3297 -2849 1569 201 0 23 chr4 177836698 177837002 -24491345 + AluJo SINE Alu 1 297 -15 5419 243 75 26 chr4 177837058 177837456 -24490891 + L1ME2 LINE L1 3305 3682 -2482 1991 147 0 0 chr4 177837456 177837772 -24490575 + AluSx SINE Alu 1 316 0 5419 243 75 26 chr4 177837772 177839168 -24489179 + L1ME2 LINE L1 3682 5007 -1157 2083 109 3 3 chr4 177839168 177839453 -24488894 + AluY SINE Alu 1 285 -26 5419 243 75 26 chr4 177839453 177840157 -24488190 + L1ME2 LINE L1 5007 5955 -209 1902 137 0 0 chr4 177840157 177840428 -24487919 + AluSq SINE Alu 29 299 -14 5419 243 75 26 chr4 177840428 177840591 -24487756 + L1ME2 LINE L1 5955 6108 -56 262 126 57 8 chr4 177840640 177840706 -24487641 + L1ME3 LINE L1 6092 6162 0 249 231 0 66 chr4 177841130 177841221 -24487126 + L1ME4a LINE L1 5983 6067 -54 329 290 176 21 chr4 177841597 177841790 -24486557 - MIR SINE MIR -14 248 26 790 347 74 26 chr4 177842545 177843154 -24485193 - L2 LINE L2 -215 3057 2421 353 211 28 0 chr4 177843335 177843406 -24484941 + LTR16C LTR ERVL 409 481 -10 440 253 201 33 chr4 177843546 177843819 -24484528 - L2 LINE L2 0 3313 2995 303 289 47 80 chr4 177844060 177844634 -24483713 + HAL1 LINE L1 945 1499 -1008 776 264 73 0 chr4 177844637 177844857 -24483490 + MIR SINE MIR 13 248 -14 314 276 35 55 chr4 177845075 177845220 -24483127 + HAL1b LINE L1 732 873 -475 966 194 32 139 chr4 177845264 177845696 -24482651 + MLT1B LTR MaLR 1 386 -4 625 232 53 71 chr4 177845764 177846104 -24482243 + L1MC5 LINE L1 7035 7368 -593 289 306 51 20 chr4 177846341 177846439 -24481908 + MLT1J LTR MaLR 103 203 -308 473 274 94 50 chr4 177846479 177846680 -24481667 + MLT1J2 LTR MaLR 241 450 0 2520 58 0 0 chr4 177846705 177846999 -24481348 + AluY SINE Alu 1 294 -17 361 242 87 50 chr4 177847048 177847209 -24481138 - MER104 DNA Tc2 -13 167 1 585 237 0 0 chr4 177847517 177847635 -24480712 + FLAM_C SINE Alu 1 118 -25 218 175 0 35 chr4 177847644 177847701 -24480646 + G-rich Low_complexity Low_complexity 2 56 0 21 0 0 0 chr4 177848252 177848273 -24480074 + AT_rich Low_complexity Low_complexity 1 21 0 476 68 14 0 chr4 177848656 177848729 -24479618 + (TGGA)n Simple_repeat Simple_repeat 3 76 0 2311 48 6 51 chr4 177849247 177849562 -24478785 + AluY SINE Alu 1 301 -10 621 253 58 5 chr4 177851057 177851247 -24477100 - MIR SINE MIR -10 252 53 956 182 44 0 chr4 177852144 177852325 -24476022 + MLT1D LTR MaLR 1 189 -316 272 215 7 168 chr4 177852326 177852475 -24475872 + MLT1D-int LTR MaLR 536 660 -711 1571 247 54 72 chr4 177852486 177853093 -24475254 + MLT1D-int LTR MaLR 773 1368 -3 1772 185 152 5 chr4 177853105 177853532 -24474815 + MLT1D LTR MaLR 16 505 0 2282 106 13 0 chr4 177853619 177853922 -24474425 - AluSx SINE Alu -3 309 3 491 183 0 0 chr4 177854164 177854257 -24474090 - AluJ/FRAM SINE Alu 0 312 220 358 337 49 6 chr4 177854328 177854491 -24473856 + L2 LINE L2 2603 2772 -542 348 274 157 30 chr4 177854530 177854727 -24473620 + MIR SINE MIR 1 222 -40 898 302 101 16 chr4 177854940 177855461 -24472886 - L2 LINE L2 -4 3309 2748 24 53 0 0 chr4 177855482 177855520 -24472827 + AT_rich Low_complexity Low_complexity 1 38 0 1365 133 226 0 chr4 177855751 177856030 -24472317 + MER2 DNA MER2_type 2 343 -1 1266 142 5 14 chr4 177857846 177858058 -24470289 + MER2 DNA MER2_type 1 210 -135 235 233 100 0 chr4 177858101 177858161 -24470186 + MER2 DNA MER2_type 280 345 0 743 266 34 15 chr4 177859805 177860072 -24468275 - LTR51 LTR ERV1 -2 669 398 3291 213 47 52 chr4 177860346 177861253 -24467094 - L1M1 LINE L1 -6641 924 22 1376 123 33 9 chr4 177861476 177861688 -24466659 + AluSx SINE Alu 1 217 -95 3179 128 125 169 chr4 177861789 177863068 -24465279 - pTR5 LTR ERV1 -135 1683 5 474 299 35 17 chr4 177863103 177863277 -24465070 - MIR SINE MIR -74 188 12 210 118 0 0 chr4 177864931 177864965 -24463382 + (GGGGA)n Simple_repeat Simple_repeat 5 38 0 253 183 48 0 chr4 177866364 177866468 -24461879 + (TA)n Simple_repeat Simple_repeat 2 110 0 1695 153 21 0 chr4 177867248 177867530 -24460817 - L1PB4 LINE L1 -10 6146 5859 2184 83 7 7 chr4 177868847 177869149 -24459198 + AluY SINE Alu 2 303 -8 324 211 53 0 chr4 177870197 177870273 -24458074 - MIR SINE MIR -2 260 181 311 299 57 19 chr4 177870289 177870446 -24457901 + HsTC2 DNA Tc2 1 163 -1735 293 341 63 8 chr4 177870557 177870683 -24457664 - MIR SINE MIR -110 152 20 728 133 0 31 chr4 177870687 177870815 -24457532 - L1MA2 LINE L1 0 6304 6181 568 242 0 22 chr4 177873534 177873716 -24454631 + (TATG)n Simple_repeat Simple_repeat 3 180 0 859 209 12 6 chr4 177873897 177874060 -24454287 - FAM SINE Alu -11 164 1 416 282 69 25 chr4 177874068 177874313 -24454034 - L1MC/D LINE L1 -1989 5819 5564 779 238 123 78 chr4 177875097 177875505 -24452842 - L3 LINE CR1 -456 1121 696 248 306 91 80 chr4 177875535 177875718 -24452629 + MIR3 SINE MIR 14 192 -66 200 59 29 0 chr4 177875720 177875754 -24452593 + (TG)n Simple_repeat Simple_repeat 1 35 0 1444 147 3 92 chr4 177875827 177876056 -24452291 + AluSq SINE Alu 1 200 -113 2351 74 7 3 chr4 177876056 177876355 -24451992 + AluSc SINE Alu 1 300 -9 1444 147 3 92 chr4 177876355 177876417 -24451930 + AluSq SINE Alu 200 266 -47 252 0 0 0 chr4 177876421 177876449 -24451898 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 196 295 221 0 chr4 177876910 177877032 -24451315 - MER5B DNA MER1_type -29 149 1 371 227 20 20 chr4 177877235 177877345 -24451002 + AluJ/FLAM SINE Alu 1 77 -225 644 239 50 25 chr4 177877916 177878075 -24450272 - MER5B DNA MER1_type -15 163 1 421 226 19 44 chr4 177879325 177879484 -24448863 - MER103 DNA DNA -10 156 2 277 310 58 0 chr4 177879541 177879628 -24448719 + MIR SINE MIR 74 165 -97 1516 153 46 46 chr4 177880216 177880497 -24447850 + AluJo SINE Alu 1 281 -31 218 162 81 14 chr4 177881256 177881330 -24447017 + C-rich Low_complexity Low_complexity 6 84 0 713 199 47 25 chr4 177881520 177881756 -24446591 + MER69 DNA AcHobo 1452 1692 -834 25 31 0 0 chr4 177882448 177882480 -24445867 + AT_rich Low_complexity Low_complexity 1 32 0 2478 204 86 15 chr4 177882480 177883271 -24445076 + MER69 DNA AcHobo 1680 2526 0 407 298 29 3 chr4 177883271 177883463 -24444884 - L1MC/D LINE L1 -633 5533 5338 364 341 45 84 chr4 177884182 177884469 -24443878 + L2 LINE L2 2985 3260 -12 790 174 0 37 chr4 177884635 177884796 -24443551 - L1PA15 LINE L1 0 6165 6011 1569 190 43 3 chr4 177888403 177888703 -24439644 + AluJb SINE Alu 1 312 0 273 346 37 9 chr4 177889479 177889586 -24438761 - L2 LINE L2 -3 3269 3160 1501 211 0 40 chr4 177890040 177890363 -24437984 - AluJo SINE Alu -2 310 1 198 276 0 35 chr4 177890871 177890929 -24437418 - MIR SINE MIR -68 140 85 194 299 0 15 chr4 177891049 177891116 -24437231 - MIR SINE MIR -7 255 190 1168 271 140 43 chr4 177891176 177892126 -24436221 - L2 LINE L2 0 3313 2258 1342 156 120 25 chr4 177893773 177894049 -24434298 + AluJb SINE Alu 1 302 0 304 287 50 30 chr4 177894119 177894220 -24434127 - L2 LINE L2 -3 3269 3167 1664 188 7 10 chr4 177895157 177895461 -24432886 - AluJb SINE Alu -9 303 1 820 199 0 0 chr4 177896014 177896200 -24432147 + L1 LINE L1 5119 5304 -842 2236 76 4 0 chr4 177897979 177898255 -24430092 + AluSp SINE Alu 29 305 -8 395 258 93 28 chr4 177898518 177898700 -24429647 + LTR33 LTR ERVL 29 222 -299 448 305 38 14 chr4 177898747 177898957 -24429390 + LTR33 LTR ERVL 307 521 0 407 294 78 25 chr4 177899274 177899474 -24428873 - MIR SINE MIR -3 259 57 280 145 108 0 chr4 177899547 177899616 -24428731 - MLT1G1 LTR MaLR -8 587 470 706 119 87 24 chr4 177899875 177900001 -24428346 + AluY SINE Alu 1 134 -177 470 97 0 0 chr4 177901360 177901422 -24426925 + Alu SINE Alu 1 62 -256 432 313 142 14 chr4 177901657 177901868 -24426479 - MIR SINE MIR -12 250 13 997 266 106 80 chr4 177901947 177902914 -24425433 + L2 LINE L2 2313 3313 0 281 362 71 21 chr4 177903926 177904067 -24424280 + L2 LINE L2 3121 3268 -4 683 212 30 98 chr4 177904538 177904619 -24423728 - MER5A DNA MER1_type 0 189 104 1920 101 107 23 chr4 177904619 177904965 -24423382 - THE1C LTR MaLR 0 375 1 683 212 30 98 chr4 177904965 177905086 -24423261 - MER5A DNA MER1_type -85 104 1 516 241 171 13 chr4 177905091 177905249 -24423098 - MER5A DNA MER1_type 0 189 7 340 304 40 54 chr4 177905249 177905397 -24422950 + MER5B DNA MER1_type 6 151 -27 264 318 65 65 chr4 177905265 177905435 -24422912 - MER5A DNA MER1_type -19 170 1 * 291 205 51 77 chr4 177905533 177905650 -24422697 + MER104 DNA Tc2 3 116 -64 5275 24 6 2 chr4 177905650 177906276 -24422071 - L1PA4 LINE L1 0 6155 5527 733 11 0 0 chr4 177906276 177906366 -24421981 + L1PA4 LINE L1 5427 5516 -639 229 100 50 0 chr4 177906366 177906406 -24421941 + HsTC2 DNA Tc2 1812 1853 -45 2270 153 56 5 chr4 177906412 177906825 -24421522 - MER57B LTR ERV1 0 434 1 280 264 0 0 chr4 177907432 177907519 -24420828 + T-rich Low_complexity Low_complexity 1 87 0 2430 70 0 7 chr4 177908280 177908579 -24419768 - AluSq SINE Alu -16 297 1 263 247 104 13 chr4 177909471 177909548 -24418799 + L2 LINE L2 3230 3313 0 24 32 0 0 chr4 177910490 177910521 -24417826 + AT_rich Low_complexity Low_complexity 1 31 0 711 282 89 0 chr4 177910527 177910740 -24417607 - MIR SINE MIR -28 234 3 414 0 0 0 chr4 177911060 177911106 -24417241 + (TA)n Simple_repeat Simple_repeat 2 47 0 895 146 64 47 chr4 177911383 177911554 -24416793 - FRAM SINE Alu -2 174 1 565 307 26 0 chr4 177911578 177911731 -24416616 + MIR SINE MIR 19 175 -87 522 240 16 8 chr4 177911843 177911968 -24416379 + L2 LINE L2 3183 3308 -5 1812 97 97 8 chr4 177912071 177912380 -24415967 + AluSx SINE Alu 1 332 0 1407 108 0 18 chr4 177913802 177914024 -24414323 + L1PA16 LINE L1 5949 6166 0 423 0 0 0 chr4 177914208 177914255 -24414092 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1917 74 0 0 chr4 177914272 177914514 -24413833 - AluSg SINE Alu -66 244 3 399 330 139 10 chr4 177914552 177914746 -24413601 + MIR SINE MIR 34 252 -10 37 0 0 0 chr4 177915318 177915355 -24412992 + AT_rich Low_complexity Low_complexity 1 37 0 204 97 0 0 chr4 177915355 177915386 -24412961 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 2147 117 33 0 chr4 177917650 177917983 -24410364 - L1PA13 LINE L1 -1 6162 5819 276 301 86 42 chr4 177918378 177918786 -24409561 + HAL1 LINE L1 1113 1538 -969 23 54 0 0 chr4 177918919 177918956 -24409391 + AT_rich Low_complexity Low_complexity 1 37 0 208 338 88 62 chr4 177919025 177919410 -24408937 - L2 LINE L2 -679 2635 2241 1882 130 39 0 chr4 177920635 177920942 -24407405 - MER2 DNA MER2_type -25 320 2 181 283 19 0 chr4 177921053 177921106 -24407241 - MIR SINE MIR -65 143 90 2155 121 24 37 chr4 177922149 177922529 -24405818 - THE1C LTR MaLR 0 375 1 2371 57 13 3 chr4 177922541 177922839 -24405508 - AluY SINE Alu -9 302 2 337 244 207 7 chr4 177925624 177925759 -24402588 - L1MC/D LINE L1 -2331 5477 5316 27 62 0 0 chr4 177926123 177926171 -24402176 + AT_rich Low_complexity Low_complexity 1 48 0 400 254 8 33 chr4 177926535 177926657 -24401690 - MIR SINE MIR -90 172 54 2040 121 0 0 chr4 177927132 177927445 -24400902 - AluSx SINE Alu 0 315 3 529 235 8 30 chr4 177927525 177927657 -24400690 - MIR SINE MIR -85 177 49 216 0 0 0 chr4 177928160 177928184 -24400163 + (TTG)n Simple_repeat Simple_repeat 1 24 0 204 258 13 42 chr4 177928241 177928319 -24400028 + L2 LINE L2 2908 2982 -290 214 281 104 0 chr4 177928480 177928576 -24399771 + L2 LINE L2 3160 3265 -7 228 327 69 40 chr4 177928611 177928712 -24399635 - L3b LINE CR1 -262 1321 1218 263 266 32 0 chr4 177929407 177929501 -24398846 + L1ME4a LINE L1 5967 6063 -58 413 314 59 34 chr4 177930319 177930558 -24397789 + MIR SINE MIR 6 250 -12 2319 52 14 0 chr4 177930576 177930864 -24397483 - AluY SINE Alu -19 292 1 1958 102 7 33 chr4 177932494 177932798 -24395549 + AluSg SINE Alu 1 296 -14 251 322 70 53 chr4 177933323 177933494 -24394853 - MIR SINE MIR -61 201 28 2252 94 19 7 chr4 177933638 177933947 -24394400 + AluSq SINE Alu 1 313 0 2144 93 7 14 chr4 177934465 177934756 -24393591 - AluSq SINE Alu -24 289 1 2103 109 7 20 chr4 177936104 177936406 -24391941 + AluSx SINE Alu 1 298 -14 770 188 77 0 chr4 177937650 177937831 -24390516 - MER20 DNA MER1_type -5 214 20 225 0 0 0 chr4 177938633 177938658 -24389689 + (T)n Simple_repeat Simple_repeat 1 25 0 237 33 0 0 chr4 177939485 177939515 -24388832 + (CA)n Simple_repeat Simple_repeat 2 31 0 198 239 0 0 chr4 177939547 177939593 -24388754 + MIR SINE MIR 163 208 -54 536 258 168 0 chr4 177941295 177941450 -24386897 + MER5A DNA MER1_type 9 189 0 3396 153 75 4 chr4 177942093 177942790 -24385557 + L1MA9 LINE L1 3735 4480 -1666 2717 169 25 18 chr4 177942769 177943771 -24384576 + L1MA9 LINE L1 4742 5745 -567 * 4879 140 6 11 chr4 177943783 177944639 -24383708 - L1PA13 LINE L1 0 6163 5312 2750 152 51 0 chr4 177944628 177944663 -24383684 + L1MA9 LINE L1 5748 5780 -532 * 270 0 0 0 chr4 177944663 177944693 -24383654 + (CA)n Simple_repeat Simple_repeat 2 31 0 2750 152 51 0 chr4 177944693 177945171 -24383176 + L1MA9 LINE L1 5780 6287 -25 25 31 0 0 chr4 177945222 177945254 -24383093 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr4 177945314 177945357 -24382990 + AT_rich Low_complexity Low_complexity 1 43 0 190 362 11 11 chr4 177945618 177945712 -24382635 - MIR SINE MIR -72 190 97 281 132 38 28 chr4 177946132 177946238 -24382109 + (TCTA)n Simple_repeat Simple_repeat 1 107 0 2743 96 5 5 chr4 177946300 177946675 -24381672 - THE1C LTR MaLR 0 375 1 279 260 142 20 chr4 177947767 177948021 -24380326 - L1ME LINE L1 -240 5881 5597 746 211 0 0 chr4 177948338 177948471 -24379876 - FLAM_A SINE Alu 0 133 1 428 294 69 49 chr4 177949310 177949420 -24378927 - L1ME LINE L1 -1430 4716 4610 1888 185 0 6 chr4 177949420 177949733 -24378614 - AluJo SINE Alu 0 312 2 428 294 69 49 chr4 177949733 177949928 -24378419 - L1ME LINE L1 -1536 4610 4405 293 304 34 20 chr4 177950072 177950276 -24378071 - L1ME LINE L1 -2201 3945 3739 1507 262 90 10 chr4 177951530 177951699 -24376648 + MLT1F LTR MaLR 1 155 -387 2084 98 24 7 chr4 177951699 177951986 -24376361 + AluSq SINE Alu 1 292 -21 1507 262 90 10 chr4 177951986 177952316 -24376031 + MLT1F LTR MaLR 155 540 -2 1466 174 58 52 chr4 177953416 177953779 -24374568 + MLT1A1 LTR MaLR 1 365 0 2474 87 0 0 chr4 177953818 177954127 -24374220 - AluY SINE Alu -2 309 1 239 344 52 10 chr4 177954605 177954701 -24373646 - L2 LINE L2 0 3272 3173 21 36 0 0 chr4 177957265 177957293 -24371054 + AT_rich Low_complexity Low_complexity 1 28 0 252 143 0 0 chr4 177957372 177957414 -24370933 + (A)n Simple_repeat Simple_repeat 1 42 0 280 339 9 0 chr4 177957422 177957534 -24370813 + GA-rich Low_complexity Low_complexity 1 113 0 249 209 0 0 chr4 177957955 177958022 -24370325 + T-rich Low_complexity Low_complexity 1 67 0 183 156 0 0 chr4 177958051 177958083 -24370264 + CT-rich Low_complexity Low_complexity 2 33 0 334 174 0 70 chr4 177958093 177958208 -24370139 + T-rich Low_complexity Low_complexity 3 109 0 277 304 57 51 chr4 177958987 177959145 -24369202 + MIR SINE MIR 30 188 -74 1759 166 3 42 chr4 177959361 177959668 -24368679 - AluJo SINE Alu -16 296 2 1264 219 4 8 chr4 177960124 177960375 -24367972 + AluJo SINE Alu 1 250 -62 447 269 67 8 chr4 177961011 177961145 -24367202 + L2 LINE L2 3171 3312 -1 1582 190 0 14 chr4 177961610 177961900 -24366447 + AluJo SINE Alu 1 286 -26 266 381 93 0 chr4 177962089 177962207 -24366140 - L2 LINE L2 -32 3240 3112 2223 92 7 0 chr4 177962360 177962654 -24365693 + AluY SINE Alu 1 296 -15 256 347 41 7 chr4 177963024 177963171 -24365176 - L2 LINE L2 -291 2981 2830 2146 122 3 0 chr4 177963665 177963960 -24364387 + AluSg SINE Alu 1 296 -14 229 324 44 0 chr4 177964932 177965000 -24363347 + MIR SINE MIR 6 76 -186 213 283 43 43 chr4 177965036 177965128 -24363219 + MIR SINE MIR 170 261 -1 522 198 60 0 chr4 177965204 177965320 -24363027 - MER58B DNA MER1_type -1 340 218 344 340 107 31 chr4 177965626 177965888 -24362459 + L2 LINE L2 2090 2401 -913 216 0 0 0 chr4 177965888 177965912 -24362435 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 344 340 107 31 chr4 177965912 177966096 -24362251 + L2 LINE L2 2401 2570 -744 329 346 43 47 chr4 177966317 177966571 -24361776 + L2 LINE L2 2606 2858 -456 1406 101 14 0 chr4 177966797 177967014 -24361333 + L1MA5A LINE L1 6075 6294 -3 332 294 54 0 chr4 177967079 177967171 -24361176 + L2 LINE L2 3199 3295 -18 23 33 0 0 chr4 177967375 177967405 -24360942 + AT_rich Low_complexity Low_complexity 1 30 0 508 223 53 112 chr4 177967785 177968179 -24360168 + LTR37A LTR ERV1 55 425 -1 23 54 0 0 chr4 177969151 177969188 -24359159 + AT_rich Low_complexity Low_complexity 1 37 0 1275 204 52 18 chr4 177969267 177969596 -24358751 + MER58B DNA MER1_type 2 341 0 1147 167 25 0 chr4 177971605 177971803 -24356544 + L1PA15 LINE L1 5963 6165 0 569 230 68 6 chr4 177972228 177972389 -24355958 + MIR SINE MIR 91 261 -1 2193 117 0 19 chr4 177972551 177972858 -24355489 + AluSx SINE Alu 1 301 -11 27 73 0 0 chr4 177975175 177975230 -24353117 + AT_rich Low_complexity Low_complexity 1 55 0 240 347 16 58 chr4 177975278 177975399 -24352948 - MIR SINE MIR -68 140 25 23 78 0 0 chr4 177976142 177976193 -24352154 + AT_rich Low_complexity Low_complexity 1 51 0 1559 234 127 22 chr4 177976689 177977280 -24351067 + L2 LINE L2 2283 2935 -379 490 62 16 0 chr4 178027280 178027344 -24301003 - AluJ/FLAM SINE Alu -246 66 2 1748 182 3 3 chr4 178027726 178028023 -24300324 + AluJb SINE Alu 1 297 -15 4093 45 0 2 chr4 178028032 178028516 -24299831 + L1PA7 LINE L1 5465 5947 -207 822 152 0 22 chr4 178028761 178028899 -24299448 + AluJo SINE Alu 1 135 -177 864 168 27 0 chr4 178029008 178029157 -24299190 + FRAM SINE Alu 24 176 0 224 298 170 6 chr4 178029198 178029369 -24298978 - L2 LINE L2 -896 2418 2220 255 152 0 0 chr4 178029840 178029886 -24298461 + T-rich Low_complexity Low_complexity 1 46 0 1887 74 12 4 chr4 178030072 178030315 -24298032 + L1PA7 LINE L1 5905 6149 -5 388 271 76 48 chr4 178030440 178030650 -24297697 - MIR SINE MIR -17 245 30 21 36 0 0 chr4 178031463 178031491 -24296856 + AT_rich Low_complexity Low_complexity 1 28 0 1021 218 0 0 chr4 178031552 178031717 -24296630 - FAM SINE Alu -10 165 1 2180 116 20 0 chr4 178032645 178032946 -24295401 + AluJb SINE Alu 1 307 -5 25 0 0 0 chr4 178033469 178033494 -24294853 + AT_rich Low_complexity Low_complexity 1 25 0 1496 158 11 23 chr4 178034069 178034335 -24294012 - AluJb SINE Alu -17 295 33 415 225 174 14 chr4 178034592 178034730 -24293617 + MIR SINE MIR 37 196 -66 583 188 7 7 chr4 178035461 178035599 -24292748 + (CA)n Simple_repeat Simple_repeat 2 139 0 240 313 36 0 chr4 178035801 178035884 -24292463 + MIR SINE MIR 177 262 0 1865 189 49 6 chr4 178035921 178036270 -24292077 - MLT1A1 LTR MaLR -1 364 1 232 153 306 12 chr4 178036330 178036415 -24291932 - MER112 DNA MER1_type -5 255 146 264 59 0 0 chr4 178037869 178037903 -24290444 + (GGGTG)n Simple_repeat Simple_repeat 3 36 0 206 236 28 56 chr4 178037965 178038037 -24290310 + MIR3 SINE MIR 103 172 -36 2196 132 0 0 chr4 178038475 178038779 -24289568 - AluSg SINE Alu -5 305 2 260 273 124 60 chr4 178038843 178039342 -24289005 - L1M4 LINE L1 -1204 4942 4412 2281 116 38 30 chr4 178039639 178040011 -24288336 - THE1C LTR MaLR 0 375 1 2330 96 0 0 chr4 178041077 178041370 -24286977 - AluSx SINE Alu -2 310 18 228 149 0 43 chr4 178041386 178041433 -24286914 + Charlie7 DNA MER1_type 2503 2547 -65 230 178 0 0 chr4 178041440 178041485 -24286862 + LTR66 LTR ERVL 395 439 -171 297 167 0 0 chr4 178041485 178041539 -24286808 + (TA)n Simple_repeat Simple_repeat 2 55 0 231 167 0 0 chr4 178041539 178041581 -24286766 + LTR66 LTR ERVL 398 439 -171 243 265 136 30 chr4 178042886 178043018 -24285329 + MIR SINE MIR 34 179 -83 233 203 319 0 chr4 178043299 178043368 -24284979 - MIR SINE MIR -13 249 159 244 236 218 36 chr4 178043888 178043998 -24284349 + MIR3 SINE MIR 10 139 -69 252 250 12 0 chr4 178044504 178044588 -24283759 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 987 193 118 0 chr4 178045003 178045190 -24283157 - MER3 DNA MER1_type 0 209 1 2715 166 26 2 chr4 178045870 178046339 -24282008 + L1MC1 LINE L1 5853 6332 -1 30 59 0 0 chr4 178046347 178046398 -24281949 + AT_rich Low_complexity Low_complexity 1 51 0 382 198 24 40 chr4 178046587 178046713 -24281634 - L1ME3A LINE L1 -202 5968 5845 626 241 29 24 chr4 178046857 178047027 -24281320 + MER58B DNA MER1_type 171 341 0 2277 117 0 0 chr4 178048497 178048806 -24279541 + AluSx SINE Alu 1 309 -3 2179 108 30 0 chr4 178049286 178049581 -24278766 + AluSx SINE Alu 1 304 -8 234 219 16 16 chr4 178049937 178050001 -24278346 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 698 204 15 15 chr4 178050525 178050657 -24277690 + FLAM_C SINE Alu 2 133 -10 760 294 42 0 chr4 178050667 178050881 -24277466 + MIR SINE MIR 36 258 -4 224 171 0 0 chr4 178050883 178050918 -24277429 - L2 LINE L2 -15 3298 3264 249 119 0 0 chr4 178052308 178052350 -24275997 + (TG)n Simple_repeat Simple_repeat 2 43 0 4269 219 73 9 chr4 178052537 178053641 -24274706 + L1M4 LINE L1 3729 4903 -1243 564 152 10 0 chr4 178053745 178053844 -24274503 + L1PA16 LINE L1 6050 6149 -17 370 278 87 0 chr4 178053844 178053959 -24274388 + MIR SINE MIR 136 260 -2 2536 70 0 0 chr4 178054316 178054618 -24273729 + AluSc SINE Alu 1 302 -7 288 0 0 0 chr4 178055511 178055543 -24272804 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 443 239 80 0 chr4 178055586 178055699 -24272648 + MIR SINE MIR 71 192 -70 1242 139 55 10 chr4 178057050 178057252 -24271095 - AluJo SINE Alu -18 294 84 370 268 134 0 chr4 178057313 178057410 -24270937 - L2 LINE L2 -8 3305 3196 2252 102 3 0 chr4 178058038 178058341 -24270006 + AluSx SINE Alu 1 304 -8 216 222 62 49 chr4 178058710 178058791 -24269556 - L2 LINE L2 0 3272 3191 2502 78 10 0 chr4 178058873 178059181 -24269166 + AluSp SINE Alu 1 311 -2 1553 153 71 15 chr4 178062489 178062757 -24265590 + AluJo SINE Alu 1 283 -29 977 261 4 4 chr4 178063534 178063760 -24264587 + MIR SINE MIR 36 261 -1 248 195 77 112 chr4 178063986 178064155 -24264192 - HAL1 LINE L1 -20 2487 2325 289 342 58 0 chr4 178064235 178064355 -24263992 + MIR3 SINE MIR 53 179 -29 198 103 0 0 chr4 178064393 178064422 -24263925 + (A)n Simple_repeat Simple_repeat 1 29 0 296 318 81 45 chr4 178064629 178064852 -24263495 - MLT1K LTR MaLR -324 264 34 239 307 128 28 chr4 178066346 178066564 -24261783 - L2 LINE L2 -1157 2157 1918 1553 141 9 0 chr4 178068780 178069000 -24259347 - AluJo SINE Alu -90 222 1 2268 258 119 77 chr4 178069070 178070623 -24257724 - HAL1 LINE L1 -597 1910 292 226 269 0 0 chr4 178070791 178070843 -24257504 - HAL1 LINE L1 -2455 52 1 303 345 36 0 chr4 178070919 178071029 -24257318 + MIR SINE MIR 65 178 -84 1145 126 138 0 chr4 178072582 178072828 -24255519 - L1MA4 LINE L1 -3 6297 6018 646 155 0 0 chr4 178073149 178073246 -24255101 - FLAM_C SINE Alu -24 119 23 2317 66 0 10 chr4 178073271 178073572 -24254775 - AluY SINE Alu -13 298 1 1078 129 0 0 chr4 178074313 178074460 -24253887 + FRAM SINE Alu 1 146 -30 220 53 53 0 chr4 178074462 178074500 -24253847 + GA-rich Low_complexity Low_complexity 2 41 0 2369 97 0 0 chr4 178078002 178078310 -24250037 - AluSx SINE Alu -4 308 1 2678 131 24 2 chr4 178078529 178078986 -24249361 - L1MA4A LINE L1 -323 5980 5514 1719 128 47 0 chr4 178078987 178079284 -24249063 + L1MA4A LINE L1 5981 6291 -12 180 0 0 0 chr4 178080065 178080085 -24248262 + (TG)n Simple_repeat Simple_repeat 1 20 0 1755 158 6 32 chr4 178080111 178080427 -24247920 + AluJo SINE Alu 1 308 -4 204 200 0 0 chr4 178080433 178080468 -24247879 + polypurine Low_complexity Low_complexity 1 35 0 312 330 8 42 chr4 178081610 178081728 -24246619 + L2 LINE L2 3159 3272 0 259 237 186 34 chr4 178083014 178083107 -24245240 - MIR3 SINE MIR -14 194 84 660 286 62 50 chr4 178083107 178083136 -24245211 + MIR SINE MIR 1 28 -234 2230 138 31 0 chr4 178083136 178083491 -24244856 + MER47A DNA MER2_type 1 366 0 660 286 62 50 chr4 178083491 178083720 -24244627 + MIR SINE MIR 28 262 0 23 0 0 0 chr4 178084373 178084396 -24243951 + AT_rich Low_complexity Low_complexity 1 23 0 1171 48 0 0 chr4 178084747 178084893 -24243454 + AluY SINE Alu 166 311 0 266 302 123 9 chr4 178084956 178085062 -24243285 + L2 LINE L2 3153 3270 -2 258 312 64 18 chr4 178086111 178086220 -24242127 - MIR3 SINE MIR -3 205 92 827 193 12 30 chr4 178086678 178086844 -24241503 + MER5A DNA MER1_type 1 163 -26 1566 199 19 13 chr4 178086963 178087279 -24241068 - MLT1E LTR MaLR 0 593 276 3415 111 16 12 chr4 178087400 178087959 -24240388 - L1PA16 LINE L1 -266 5900 5340 428 266 62 9 chr4 178087959 178088072 -24240275 - MIR SINE MIR -115 147 29 1812 163 3 7 chr4 178089815 178090109 -24238238 + AluJb SINE Alu 15 307 -5 1280 156 59 53 chr4 178091058 178091379 -24236968 - MER33 DNA MER1_type -1 323 1 1941 120 42 3 chr4 178091842 178092126 -24236221 + AluSx SINE Alu 1 295 -17 786 171 6 17 chr4 178092778 178092953 -24235394 - L1M4 LINE L1 -968 5178 5006 1688 148 54 17 chr4 178092959 178093256 -24235091 - AluJo SINE Alu -4 308 1 1535 175 82 11 chr4 178093467 178093747 -24234600 - AluJb SINE Alu -12 300 1 1780 108 8 8 chr4 178095487 178095736 -24232611 + AluSc SINE Alu 47 295 -14 304 353 166 29 chr4 178097009 178097352 -24230995 + L2 LINE L2 2910 3299 -14 256 105 0 0 chr4 178097458 178097496 -24230851 + LTR33 LTR ERVL 3 40 -481 560 307 18 0 chr4 178097496 178097659 -24230688 - MIR SINE MIR -27 235 70 662 178 0 0 chr4 178097987 178098094 -24230253 + U6 snRNA snRNA 1 107 0 262 116 0 0 chr4 178098109 178098152 -24230195 - MER116 DNA Mariner -13 67 25 204 196 130 0 chr4 178098918 178098964 -24229383 + L2 LINE L2 3254 3305 -8 1650 186 7 10 chr4 178098992 178099288 -24229059 + AluJo SINE Alu 1 295 -17 2533 81 0 0 chr4 178099469 178099777 -24228570 + AluSg SINE Alu 1 308 -2 727 304 85 41 chr4 178100933 178101488 -24226859 - MLT1L LTR MaLR -4 611 33 252 0 0 0 chr4 178101771 178101799 -24226548 + (TG)n Simple_repeat Simple_repeat 1 28 0 2282 101 0 0 chr4 178101800 178102096 -24226251 - AluSx SINE Alu -16 296 1 650 124 0 0 chr4 178102314 178102411 -24225936 - L1PA16 LINE L1 -296 5870 5774 434 200 35 0 chr4 178102411 178102496 -24225851 - MLT1E LTR MaLR -455 138 51 22 0 0 0 chr4 178102529 178102551 -24225796 + AT_rich Low_complexity Low_complexity 1 22 0 186 436 35 15 chr4 178102722 178102919 -24225428 + L2 LINE L2 2953 3153 -119 225 65 0 0 chr4 178102987 178103018 -24225329 + (TG)n Simple_repeat Simple_repeat 2 32 0 2362 98 3 0 chr4 178103019 178103314 -24225033 - AluSp SINE Alu -17 296 1 316 284 10 20 chr4 178103469 178103571 -24224776 + MIR SINE MIR 31 131 -131 1754 138 28 7 chr4 178104107 178104390 -24223957 + AluJb SINE Alu 15 303 -9 230 320 10 21 chr4 178105328 178105425 -24222922 + CT-rich Low_complexity Low_complexity 3 98 0 2051 243 45 16 chr4 178105472 178105979 -24222368 + MLT1F LTR MaLR 6 527 -15 774 292 68 57 chr4 178106792 178106954 -24221393 - L2 LINE L2 -38 3275 3116 2569 57 0 3 chr4 178106954 178107255 -24221092 + AluY SINE Alu 1 300 -11 774 292 68 57 chr4 178107255 178107801 -24220546 - L2 LINE L2 -197 3116 2545 1237 276 132 28 chr4 178108524 178109231 -24219116 - L2 LINE L2 -801 2513 1734 2173 108 3 0 chr4 178109793 178110080 -24218267 + AluSx SINE Alu 1 288 -24 2032 114 24 0 chr4 178110551 178110841 -24217506 + AluSx SINE Alu 2 298 -14 1305 123 15 167 chr4 178112247 178112589 -24215758 - AluSx SINE Alu -20 292 3 253 204 0 0 chr4 178112972 178113016 -24215331 + AluJ/monomer SINE Alu 1 44 -256 2006 141 0 0 chr4 178113135 178113418 -24214929 - AluSx SINE Alu -29 283 1 508 206 24 16 chr4 178113420 178113546 -24214801 + L1MA10 LINE L1 6205 6331 -3 214 318 206 0 chr4 178114203 178114329 -24214018 + MIR SINE MIR 2 153 -109 299 293 24 0 chr4 178114958 178115040 -24213307 + CT-rich Low_complexity Low_complexity 3 86 0 251 200 231 0 chr4 178115077 178115142 -24213205 - L2 LINE L2 0 3313 3234 574 273 40 6 chr4 178115593 178115769 -24212578 + MIR SINE MIR 9 190 -72 2087 129 3 16 chr4 178116777 178117087 -24211260 - AluSx SINE Alu -6 306 1 1618 107 45 4 chr4 178118744 178118988 -24209359 + AluSc SINE Alu 1 254 -55 1458 114 5 5 chr4 178118990 178119192 -24209155 + AluSc SINE Alu 97 298 -11 266 250 9 65 chr4 178119753 178119861 -24208486 - L2 LINE L2 -214 3058 2957 2394 95 3 0 chr4 178120018 178120322 -24208025 + AluSp SINE Alu 1 305 -8 679 313 51 62 chr4 178120532 178121062 -24207285 + L3 LINE CR1 859 1382 -195 276 272 114 32 chr4 178121070 178121228 -24207119 - MIR3 SINE MIR -18 190 20 228 388 34 0 chr4 178121269 178121416 -24206931 + L3 LINE CR1 1406 1557 -20 543 92 0 0 chr4 178121521 178121597 -24206750 - MER41B LTR ERV1 -88 547 472 380 125 0 0 chr4 178122050 178122106 -24206241 - Alu SINE Alu -243 56 1 180 0 0 0 chr4 178122120 178122140 -24206207 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1182 109 158 5 chr4 178122446 178122630 -24205717 - AluSg/x SINE Alu 0 312 101 387 113 75 0 chr4 178123197 178123277 -24205070 + L1MA7 LINE L1 6206 6291 0 861 217 0 0 chr4 178123283 178123440 -24204907 - FRAM SINE Alu -12 164 8 662 216 207 14 chr4 178123642 178123777 -24204570 + MIR SINE MIR 8 116 -146 195 42 0 0 chr4 178123777 178123801 -24204546 + (TAA)n Simple_repeat Simple_repeat 3 26 0 662 216 207 14 chr4 178123801 178123878 -24204469 + MIR SINE MIR 116 261 -1 189 0 0 0 chr4 178126880 178126901 -24201446 + (T)n Simple_repeat Simple_repeat 1 21 0 561 250 91 36 chr4 178127227 178127447 -24200900 - MIR SINE MIR 0 262 31 318 280 114 15 chr4 178127756 178127888 -24200459 - MIR SINE MIR -71 191 47 1694 122 70 3 chr4 178129254 178129541 -24198806 - L1MA5 LINE L1 -2 6298 5993 2391 83 0 7 chr4 178129796 178130096 -24198251 - AluSg SINE Alu -12 298 1 463 294 98 10 chr4 178131166 178131370 -24196977 + MIR SINE MIR 22 243 -19 2137 114 3 3 chr4 178132526 178132823 -24195524 + AluSg SINE Alu 1 297 -13 194 255 64 43 chr4 178134260 178134354 -24193993 - MIR3 SINE MIR -1 207 112 2427 95 0 0 chr4 178134715 178135019 -24193328 + AluSx SINE Alu 1 304 -8 1656 145 71 28 chr4 178135025 178135307 -24193040 + AluJb SINE Alu 1 294 -18 255 31 0 0 chr4 178135745 178135777 -24192570 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 2263 112 0 0 chr4 178139223 178139518 -24188829 + AluSg SINE Alu 1 295 -15 1165 133 0 0 chr4 178140457 178140630 -24187717 - AluSg/x SINE Alu -4 308 136 529 309 27 5 chr4 178142324 178142512 -24185835 - MIR SINE MIR -12 250 59 614 224 19 71 chr4 178142514 178142724 -24185623 - L2 LINE L2 -2 3311 3113 808 255 73 38 chr4 178142981 178143322 -24185025 - L2 LINE L2 -1690 1624 1272 216 0 0 0 chr4 178143434 178143458 -24184889 + (T)n Simple_repeat Simple_repeat 1 24 0 1721 171 3 7 chr4 178143724 178144010 -24184337 - AluJb SINE Alu -18 294 10 230 261 0 36 chr4 178145904 178146015 -24182332 + C-rich Low_complexity Low_complexity 5 111 0 217 317 10 10 chr4 178146235 178146336 -24182011 + (CCG)n Simple_repeat Simple_repeat 1 101 0 413 290 161 5 chr4 178146792 178146978 -24181369 - MIR SINE MIR -27 235 21 1742 183 7 0 chr4 178148271 178148556 -24179791 - AluJo SINE Alu -25 287 1 2476 143 23 39 chr4 178152131 178152197 -24176150 - Tigger2a DNA MER2_type -2275 433 367 2313 110 0 0 chr4 178152197 178152498 -24175849 + AluSc SINE Alu 1 301 -8 2476 143 23 39 chr4 178152498 178152871 -24175476 - Tigger2a DNA MER2_type -2341 367 1 1948 137 3 35 chr4 178152938 178153022 -24175325 - MER47A DNA MER2_type -1957 366 281 2352 87 3 3 chr4 178153022 178153320 -24175027 + AluSx SINE Alu 1 298 -14 1948 137 3 35 chr4 178153320 178153550 -24174797 - MER47A DNA MER2_type -2042 281 62 2175 103 7 0 chr4 178153709 178154042 -24174305 - AluSq SINE Alu 0 335 1 1923 147 0 20 chr4 178154365 178154665 -24173682 - AluJb SINE Alu -18 294 1 204 263 26 0 chr4 178154890 178154966 -24173381 + (TTA)n Simple_repeat Simple_repeat 3 80 0 301 286 71 0 chr4 178155893 178155991 -24172356 - MIR SINE MIR -110 152 48 2324 144 38 33 chr4 178156478 178156547 -24171800 - MSTB LTR MaLR 0 426 359 2363 91 3 3 chr4 178156547 178156854 -24171493 + AluSq SINE Alu 1 307 -6 2324 144 38 33 chr4 178156854 178157208 -24171139 - MSTB LTR MaLR -67 359 1 2000 133 3 7 chr4 178158488 178158781 -24169566 + AluSx SINE Alu 1 292 -20 262 210 87 80 chr4 178159184 178159322 -24169025 - MLT1L LTR MaLR -11 604 466 1064 134 0 41 chr4 178159405 178159576 -24168771 + AluSg/x SINE Alu 134 297 -15 1749 150 58 24 chr4 178159681 178159975 -24168372 - AluJo SINE Alu -8 304 1 259 235 257 32 chr4 178161020 178161207 -24167140 - L2 LINE L2 0 3313 3085 24 32 0 0 chr4 178163480 178163511 -24164836 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 178163613 178163634 -24164713 + AT_rich Low_complexity Low_complexity 1 21 0 1802 151 14 3 chr4 178164214 178164499 -24163848 + AluJo SINE Alu 1 288 -24 1145 106 62 0 chr4 178164765 178164925 -24163422 - AluSc SINE Alu -12 297 128 2142 99 16 7 chr4 178165153 178165456 -24162891 + AluSq SINE Alu 1 306 -7 2341 99 3 3 chr4 178167034 178167337 -24161010 + AluSq SINE Alu 1 303 -10 558 241 114 38 chr4 178168362 178168598 -24159749 + MIR SINE MIR 9 262 0 1305 89 0 6 chr4 178171379 178171548 -24156799 - AluSg SINE Alu -142 168 1 22 56 0 0 chr4 178171900 178171936 -24156411 + AT_rich Low_complexity Low_complexity 1 36 0 3224 139 60 22 chr4 178172041 178172119 -24156228 + L1MA8 LINE L1 5594 5668 -623 2009 108 54 20 chr4 178172119 178172414 -24155933 + AluSg SINE Alu 1 305 -5 3224 139 60 22 chr4 178172414 178173004 -24155343 + L1MA8 LINE L1 5668 6287 -4 244 257 64 36 chr4 178173075 178173215 -24155132 + L1MC4 LINE L1 7743 7886 -156 858 261 62 26 chr4 178173530 178173871 -24154476 - L2 LINE L2 -1690 1624 1272 225 0 0 0 chr4 178173984 178174009 -24154338 + (T)n Simple_repeat Simple_repeat 1 25 0 1846 159 3 7 chr4 178174273 178174568 -24153779 - AluJb SINE Alu -18 294 1 338 341 146 33 chr4 178174724 178175184 -24153163 - L2 LINE L2 -648 2666 2155 2180 106 0 0 chr4 178176161 178176464 -24151883 - AluSg SINE Alu 0 303 1 1414 183 81 19 chr4 178180673 178180996 -24147351 - MER2 DNA MER2_type -1 343 1 455 317 102 16 chr4 178182449 178182752 -24145595 + L1MC4a LINE L1 5561 5889 -1919 24 0 0 0 chr4 178182974 178182998 -24145349 + AT_rich Low_complexity Low_complexity 1 24 0 837 98 140 0 chr4 178182999 178183142 -24145205 - L1MA3 LINE L1 -2 6303 6141 906 204 0 6 chr4 178183417 178183593 -24144754 - AluJo SINE Alu -15 297 123 2035 95 16 25 chr4 178183606 178183921 -24144426 - L1MA2 LINE L1 -1 6303 5992 270 164 18 0 chr4 178183926 178183981 -24144366 - AluJo SINE Alu -165 137 82 245 348 36 27 chr4 178184197 178184309 -24144038 + L2 LINE L2 3158 3270 -2 21 0 0 0 chr4 178186355 178186376 -24141971 + AT_rich Low_complexity Low_complexity 1 21 0 2851 114 11 23 chr4 178186604 178187043 -24141304 - MER57B LTR ERV1 0 434 1 2098 224 50 38 chr4 178187917 178188754 -24139593 + L1ME3A LINE L1 5092 5938 -232 2290 99 0 3 chr4 178188978 178189282 -24139065 - AluSg SINE Alu -7 303 1 346 226 21 11 chr4 178189658 178189751 -24138596 - MLT1J1 LTR MaLR -352 94 1 1506 141 34 0 chr4 178190050 178190313 -24138034 + L1PA16 LINE L1 5760 6031 -135 2201 95 10 14 chr4 178190399 178190694 -24137653 - AluSp SINE Alu -17 296 3 1563 138 55 14 chr4 178190790 178191079 -24137268 - MSTA LTR MaLR 0 428 128 310 89 0 0 chr4 178191083 178191128 -24137219 + L1PA16 LINE L1 6117 6161 -5 1705 155 4 4 chr4 178191145 178191416 -24136931 + AluJo SINE Alu 39 309 -3 2088 121 21 0 chr4 178192583 178192872 -24135475 + AluSg SINE Alu 1 295 -15 470 333 84 71 chr4 178193230 178193612 -24134735 + L2 LINE L2 2878 3264 -8 1816 135 145 56 chr4 178193622 178193763 -24134584 + MSTA LTR MaLR 1 128 -300 2052 134 7 10 chr4 178193763 178194068 -24134279 - AluSx SINE Alu -8 304 1 1816 135 145 56 chr4 178194068 178194319 -24134028 + MSTA LTR MaLR 128 428 0 228 257 0 0 chr4 178194575 178194645 -24133702 + (TA)n Simple_repeat Simple_repeat 1 70 0 252 292 0 0 chr4 178194650 178194715 -24133632 - L2 LINE L2 0 3313 3249 312 27 0 0 chr4 178194969 178195006 -24133341 + (CA)n Simple_repeat Simple_repeat 2 38 0 855 189 68 34 chr4 178195224 178195489 -24132858 - ORSL DNA AcHobo 0 275 2 199 286 16 0 chr4 178196354 178196417 -24131930 + MIR3 SINE MIR 120 183 -25 2313 101 0 13 chr4 178196564 178196872 -24131475 - AluSx SINE Alu -8 304 1 287 269 32 0 chr4 178196925 178197018 -24131329 + (TA)n Simple_repeat Simple_repeat 1 96 0 602 217 82 33 chr4 178198092 178198276 -24130071 + MIR SINE MIR 70 262 0 288 333 19 0 chr4 178198526 178198634 -24129713 + MIR3 SINE MIR 65 174 -34 324 0 0 0 chr4 178199103 178199139 -24129208 + (CA)n Simple_repeat Simple_repeat 1 36 0 408 287 99 58 chr4 178199613 178199867 -24128480 - L1ME4a LINE L1 -247 5874 5605 1601 162 60 14 chr4 178199867 178200151 -24128196 - AluJb SINE Alu -15 297 1 408 287 99 58 chr4 178200151 178200189 -24128158 - L1ME4a LINE L1 -516 5605 5570 504 0 0 0 chr4 178201592 178201648 -24126699 + (CA)n Simple_repeat Simple_repeat 2 57 0 264 122 0 0 chr4 178202051 178202092 -24126255 + (TA)n Simple_repeat Simple_repeat 1 41 0 2294 112 0 0 chr4 178203396 178203700 -24124647 + AluSx SINE Alu 2 305 -7 240 333 20 20 chr4 178203856 178203955 -24124392 + MIR SINE MIR 44 142 -66 1568 152 15 22 chr4 178204720 178204990 -24123357 + AluJo SINE Alu 15 282 -30 198 103 0 0 chr4 178204993 178205022 -24123325 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 198 71 0 0 chr4 178205027 178205055 -24123292 + (TTG)n Simple_repeat Simple_repeat 2 29 0 297 0 0 0 chr4 178206655 178206688 -24121659 + (TG)n Simple_repeat Simple_repeat 2 34 0 242 114 0 0 chr4 178206689 178206724 -24121623 + (GA)n Simple_repeat Simple_repeat 2 36 0 1611 176 7 31 chr4 178206724 178207013 -24121334 - AluJo SINE Alu -30 282 1 1539 44 0 0 chr4 178207623 178207804 -24120543 - AluYb8 SINE Alu -2 316 136 2233 83 45 3 chr4 178207805 178208093 -24120254 - AluSq SINE Alu -13 300 1 216 342 39 65 chr4 178208522 178208581 -24119766 + L2 LINE L2 2053 2112 -1202 2204 132 0 3 chr4 178208581 178208885 -24119462 - AluSx SINE Alu -9 303 1 216 342 39 65 chr4 178208885 178209056 -24119291 + L2 LINE L2 2112 2277 -1037 373 123 0 46 chr4 178209069 178209134 -24119213 + Alu SINE Alu 241 302 0 2130 140 45 28 chr4 178209535 178209893 -24118454 + THE1B LTR MaLR 1 364 0 983 80 0 0 chr4 178209962 178210087 -24118260 - AluSg/x SINE Alu -5 307 183 4085 195 20 10 chr4 178260089 178261098 -24067249 + L1M2 LINE L1 2768 3789 -3059 446 246 42 25 chr4 178261100 178261218 -24067129 + FAM SINE Alu 2 121 -64 246 32 0 0 chr4 178261264 178261295 -24067052 + (A)n Simple_repeat Simple_repeat 1 31 0 8564 177 22 5 chr4 178261865 178263813 -24064534 - L1P4 LINE L1 -673 5492 3520 2148 107 7 0 chr4 178264886 178265176 -24063171 + AluSq SINE Alu 1 292 -21 686 98 18 0 chr4 178265176 178265288 -24063059 + (GGAGA)n Simple_repeat Simple_repeat 1 114 0 965 170 0 0 chr4 178265454 178265625 -24062722 - L1 LINE L1 -2203 3943 3773 2038 82 38 3 chr4 178265630 178265923 -24062424 - L1PA7 LINE L1 -6 6148 5846 9743 71 15 1 chr4 178265925 178267693 -24060654 - L1PA7 LINE L1 -407 5747 3959 1986 146 10 3 chr4 178267880 178268168 -24060179 + AluSx SINE Alu 1 290 -22 204 222 19 37 chr4 178270247 178270301 -24058046 + L2 LINE L2 3216 3268 -4 452 275 84 0 chr4 178270672 178270839 -24057508 - L1ME3 LINE L1 -88 6074 5894 439 216 30 52 chr4 178271634 178271749 -24056598 - Charlie8 DNA MER1_type -108 233 120 672 117 117 25 chr4 178271749 178271869 -24056478 - FLAM_C SINE Alu -2 131 1 439 216 30 52 chr4 178271869 178271887 -24056460 - Charlie8 DNA MER1_type -221 120 103 599 85 0 0 chr4 178272771 178272853 -24055494 - HY4 scRNA scRNA -11 82 1 22 35 0 0 chr4 178273084 178273113 -24055234 + AT_rich Low_complexity Low_complexity 1 29 0 378 238 0 0 chr4 178273370 178273454 -24054893 - Tigger1 DNA MER2_type 0 2418 2335 * 1615 122 56 0 chr4 178273451 178273739 -24054608 + Tigger1 DNA MER2_type 1757 2060 -358 2334 164 28 2 chr4 178273845 178274513 -24053834 + L1M2 LINE L1 5009 5692 -605 290 244 13 0 chr4 178274523 178274601 -24053746 + L1PA15-16 LINE L1 1491 1569 -5280 * 961 214 5 0 chr4 178274580 178274807 -24053540 + L1PA15-16 LINE L1 1335 1568 -5282 2048 139 0 0 chr4 178274976 178275291 -24053056 + AluSx SINE Alu 1 315 0 1666 166 50 33 chr4 178275513 178275632 -24052715 + AluJo SINE Alu 3 119 -193 198 24 24 49 chr4 178275632 178275673 -24052674 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1666 166 50 33 chr4 178275673 178275855 -24052492 + AluJo SINE Alu 119 309 -3 305 232 133 33 chr4 178276586 178276797 -24051550 + HAL1 LINE L1 2174 2405 -102 293 120 0 0 chr4 178276858 178276908 -24051439 - MADE1 DNA Mariner 0 80 31 1880 158 36 10 chr4 178277766 178278070 -24050277 + AluJb SINE Alu 1 312 0 590 279 128 9 chr4 178278078 178278297 -24050050 - MIR SINE MIR -6 256 12 3554 213 52 23 chr4 178278939 178279172 -24049175 - L1ME1 LINE L1 -34 6132 5907 2372 82 54 35 chr4 178279172 178279488 -24048859 + THE1C LTR MaLR 1 326 -49 1818 98 4 0 chr4 178279488 178279722 -24048625 + AluSg SINE Alu 62 296 -14 2372 82 54 35 chr4 178279722 178279773 -24048574 + THE1C LTR MaLR 326 375 0 3554 213 52 23 chr4 178279773 178281000 -24047347 - L1ME1 LINE L1 -259 5907 4617 2367 102 3 0 chr4 178281000 178281305 -24047042 - AluSg SINE Alu -4 306 1 3554 213 52 23 chr4 178281305 178281589 -24046758 - L1ME1 LINE L1 -1549 4617 4343 235 108 0 0 chr4 178282007 178282044 -24046303 - L1M4 LINE L1 -1596 4550 4514 4761 129 78 3 chr4 178282237 178282381 -24045966 - Tigger1 DNA MER2_type -192 2226 2094 3455 38 9 0 chr4 178282381 178282805 -24045542 - L1PA3 LINE L1 -3 6152 5725 4761 129 78 3 chr4 178282805 178283514 -24044833 - Tigger1 DNA MER2_type -324 2094 1309 1135 144 46 102 chr4 178283513 178283797 -24044550 - Tigger1 DNA MER2_type -2150 268 1 * 216 0 0 0 chr4 178284249 178284273 -24044074 + (T)n Simple_repeat Simple_repeat 1 24 0 2311 143 52 10 chr4 178284598 178285004 -24043343 - MSTB LTR MaLR 0 426 4 486 292 49 7 chr4 178285045 178285189 -24043158 - MIR3 SINE MIR -25 183 34 1546 144 8 21 chr4 178285237 178285480 -24042867 + AluJo SINE Alu 40 279 -33 22 0 0 0 chr4 178285494 178285516 -24042831 + AT_rich Low_complexity Low_complexity 1 22 0 189 107 0 0 chr4 178286081 178286109 -24042238 + (TTTTC)n Simple_repeat Simple_repeat 1 28 0 8111 200 66 15 chr4 178286388 178288598 -24039749 + L1M2c LINE L1 346 2663 -4126 2808 180 48 18 chr4 178288759 178289466 -24038881 + L1M2c LINE L1 3719 4446 -2342 * 15683 131 12 107 chr4 178289449 178293134 -24035213 + L1P LINE L1 13 3349 -2797 761 224 92 6 chr4 178293279 178293453 -24034894 + MER5A DNA MER1_type 1 189 0 496 241 133 10 chr4 178294009 178294212 -24034135 + HAL1 LINE L1 84 311 -2196 677 209 119 119 chr4 178294289 178294512 -24033835 + HAL1 LINE L1 467 692 -1815 2107 199 50 10 chr4 178294512 178295015 -24033332 + Charlie1b DNA MER1_type 1 523 0 677 209 119 119 chr4 178295015 178295135 -24033212 + HAL1 LINE L1 691 810 -1697 335 319 59 15 chr4 178295146 178295281 -24033066 - L1ME3A LINE L1 -20 6150 6010 287 145 58 0 chr4 178295317 178295386 -24032961 - L1MB3 LINE L1 0 6183 6111 445 254 46 17 chr4 178295402 178295575 -24032772 - L1MC5 LINE L1 -430 7531 7354 11450 180 83 12 chr4 178295579 178299248 -24029099 - L1PB1 LINE L1 0 6867 2509 2273 101 3 0 chr4 178299248 178299545 -24028802 - AluSc SINE Alu -11 298 1 11450 180 83 12 chr4 178299545 178301514 -24026833 - L1PB1 LINE L1 -4358 2509 680 1544 150 40 33 chr4 178301613 178301913 -24026434 - AluJo SINE Alu -10 302 1 952 191 107 41 chr4 178301913 178302258 -24026089 + HAL1 LINE L1 799 1166 -1341 368 282 69 14 chr4 178302274 178302490 -24025857 + HAL1 LINE L1 1362 1589 -918 880 153 28 34 chr4 178302490 178302666 -24025681 - MSTD LTR MaLR 0 396 222 572 147 49 0 chr4 178302675 178302777 -24025570 - MSTD LTR MaLR -321 107 1 1364 259 66 11 chr4 178302778 178303250 -24025097 + HAL1 LINE L1 1586 2083 -424 598 319 107 60 chr4 178303658 178304263 -24024084 - L2 LINE L2 -724 2590 1957 220 308 125 8 chr4 178304300 178304420 -24023927 - MIR SINE MIR -116 146 13 2053 126 20 0 chr4 178304768 178305062 -24023285 - AluSq SINE Alu -13 300 1 185 321 0 0 chr4 178305956 178306009 -24022338 - L2 LINE L2 -213 3059 3007 208 272 74 12 chr4 178306078 178306159 -24022188 - L2 LINE L2 0 3313 3228 380 243 9 37 chr4 178306165 178306272 -24022075 - MLT1J LTR MaLR -337 174 71 8133 61 16 16 chr4 178306273 178307540 -24020807 + L1PA6 LINE L1 4207 5472 -682 2239 69 3 49 chr4 178307540 178307846 -24020501 + AluY SINE Alu 12 303 -8 8133 61 16 16 chr4 178307846 178308034 -24020313 + L1PA6 LINE L1 5472 5658 -496 2274 89 10 0 chr4 178308034 178308326 -24020021 + AluY SINE Alu 1 295 -16 8133 61 16 16 chr4 178308326 178308803 -24019544 + L1PA6 LINE L1 5658 6141 -13 353 260 0 0 chr4 178308808 178308881 -24019466 - MLT1J LTR MaLR -437 74 2 658 297 56 45 chr4 178308881 178309238 -24019109 + HAL1 LINE L1 1756 2116 -391 198 316 31 0 chr4 178309261 178309359 -24018988 + L2 LINE L2 1244 1344 -1970 2530 302 53 33 chr4 178309585 178310557 -24017790 - HERV16 LTR ERVL -2249 2747 1793 1062 190 28 14 chr4 178310632 178310848 -24017499 + MLT1E2 LTR MaLR 4 222 -404 210 319 0 0 chr4 178311607 178311701 -24016646 + L2 LINE L2 2265 2358 -956 2403 78 7 0 chr4 178311776 178312072 -24016275 - AluSg SINE Alu -11 299 2 1948 120 7 30 chr4 178312421 178312587 -24015760 - AluSx SINE Alu -20 292 124 347 0 23 0 chr4 178312587 178312630 -24015717 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 1885 58 4 21 chr4 178312630 178312871 -24015476 - AluY SINE Alu -31 280 44 1948 120 7 30 chr4 178312871 178313002 -24015345 - AluSx SINE Alu -186 126 1 2383 93 10 0 chr4 178313159 178313460 -24014887 + AluSx SINE Alu 1 304 -8 187 28 56 28 chr4 178313584 178313620 -24014727 + (CAAAAA)n Simple_repeat Simple_repeat 3 39 0 1446 133 156 15 chr4 178313621 178313884 -24014463 + AluJo SINE Alu 1 300 -2 183 42 0 0 chr4 178314619 178314643 -24013704 + (GGAA)n Simple_repeat Simple_repeat 4 27 0 2132 123 3 13 chr4 178315564 178315872 -24012475 + AluSx SINE Alu 1 305 -7 1759 154 32 4 chr4 178316080 178316359 -24011988 + AluJo SINE Alu 1 287 -25 2292 117 0 0 chr4 178316365 178316673 -24011674 + AluSc SINE Alu 1 308 -1 825 148 0 0 chr4 178316851 178316966 -24011381 + FLAM_C SINE Alu 6 120 -23 322 104 42 0 chr4 178317007 178317055 -24011292 - MER3 DNA MER1_type -5 204 155 740 216 0 12 chr4 178317057 178317224 -24011123 + FRAM SINE Alu 1 165 -1 712 206 0 22 chr4 178317302 178317438 -24010909 - MER3 DNA MER1_type -76 133 1 2400 79 3 7 chr4 178317541 178317846 -24010501 - AluSc SINE Alu -5 304 1 3211 138 108 9 chr4 178318961 178319518 -24008829 + LTR9 LTR ERV1 1 612 0 1138 246 186 12 chr4 178319661 178320149 -24008198 - L1MC4a LINE L1 -1853 5955 5383 41 36 0 0 chr4 178320153 178320208 -24008139 + AT_rich Low_complexity Low_complexity 1 55 0 4244 66 64 24 chr4 178320410 178321000 -24007347 - LTR10E LTR ERV1 0 633 20 9058 167 25 20 chr4 178321295 178322072 -24006275 - L1PB1 LINE L1 -2 6865 6093 1956 122 10 58 chr4 178322072 178322384 -24005963 - AluSx SINE Alu -15 297 1 9058 167 25 20 chr4 178322384 178324160 -24004187 - L1PB1 LINE L1 -774 6093 4282 2054 119 0 0 chr4 178324160 178324428 -24003919 - AluSq SINE Alu -45 268 1 9058 167 25 20 chr4 178324428 178324664 -24003683 - L1PB1 LINE L1 -2585 4282 4049 * 16063 122 50 8 chr4 178324658 178327162 -24001185 - L1PB1 LINE L1 -3940 2923 313 795 145 7 33 chr4 178327162 178327314 -24001033 - LTR7 LTR ERV1 0 450 303 909 132 9 18 chr4 178327576 178327750 -24000597 - LTR7 LTR ERV1 -226 224 1 1648 113 35 8 chr4 178327753 178328010 -24000337 - L1PB1 LINE L1 -6599 264 1 529 297 156 79 chr4 178328018 178329043 -23999304 + L2 LINE L2 1868 2971 -343 5138 249 43 62 chr4 178329117 178331254 -23997093 + L1PA12 LINE L1 1 2178 -5406 2184 145 0 0 chr4 178331254 178331557 -23996790 + AluSx SINE Alu 1 303 -9 5138 249 43 62 chr4 178331557 178331918 -23996429 + L1PA12 LINE L1 2178 2544 -5040 2182 113 16 13 chr4 178331918 178332229 -23996118 + AluSx SINE Alu 1 312 0 5138 249 43 62 chr4 178332229 178333252 -23995095 + L1PA12 LINE L1 2544 3957 -3627 911 148 51 131 chr4 178333879 178334115 -23994232 - MER20 DNA MER1_type 0 219 3 1145 263 66 31 chr4 178334217 178334620 -23993727 + MLT1J LTR MaLR 91 450 0 1871 145 50 0 chr4 178335030 178335492 -23992855 + AluJo SINE Alu 1 477 0 236 262 16 0 chr4 178336213 178336274 -23992073 + MLT1J LTR MaLR 231 292 -219 3470 199 54 50 chr4 178336589 178337436 -23990911 + L1MD2 LINE L1 5497 6347 -12 2145 127 0 0 chr4 178337587 178337879 -23990468 + AluSg SINE Alu 1 292 -18 996 136 0 74 chr4 178338086 178338262 -23990085 + AluJb SINE Alu 134 296 -16 207 0 0 0 chr4 178338952 178338975 -23989372 + (A)n Simple_repeat Simple_repeat 1 23 0 2322 87 0 32 chr4 178340855 178341164 -23987183 + AluSg SINE Alu 1 299 -11 593 247 21 3 chr4 178341252 178341545 -23986802 + CT-rich Low_complexity Low_complexity 1 298 0 429 261 21 14 chr4 178342016 178342158 -23986189 - MIR SINE MIR -112 150 8 1591 187 36 4 chr4 178342265 178342543 -23985804 + AluJb SINE Alu 1 287 -25 474 191 11 0 chr4 178342561 178342650 -23985697 + L1MB5 LINE L1 5994 6083 -91 2451 166 15 12 chr4 178342650 178343088 -23985259 - MER61C LTR ERV1 0 434 7 532 131 50 0 chr4 178343089 178343188 -23985159 + L1MB3 LINE L1 6080 6183 0 377 296 20 20 chr4 178343215 178343367 -23984980 - L1MC/D LINE L1 -2026 5782 5631 1932 77 46 11 chr4 178343508 178343768 -23984579 - AluSq SINE Alu -14 299 31 6835 119 136 116 chr4 178343771 178345427 -23982920 - pTR5 LTR ERV1 0 2438 750 241 98 122 0 chr4 178345427 178345468 -23982879 - AluSq SINE Alu -87 46 1 1510 187 63 58 chr4 178348258 178348454 -23979893 - MLT1B LTR MaLR -8 382 182 552 15 0 0 chr4 178348454 178348519 -23979828 + (GA)n Simple_repeat Simple_repeat 2 66 0 1510 187 63 58 chr4 178348519 178348702 -23979645 - MLT1B LTR MaLR -208 182 1 206 398 11 0 chr4 178349753 178349841 -23978506 + L2 LINE L2 3118 3206 -66 223 191 21 0 chr4 178349888 178349935 -23978412 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 889 152 0 21 chr4 178350034 178350179 -23978168 - FLAM_C SINE Alu 0 143 2 287 291 86 42 chr4 178350389 178350676 -23977671 - L2 LINE L2 -167 3105 2431 381 126 0 92 chr4 178351294 178351381 -23976966 - L1MB8 LINE L1 0 6178 6100 1682 155 7 66 chr4 178352271 178352575 -23975772 - AluJo SINE Alu -26 286 1 324 221 244 0 chr4 178353954 178354040 -23974307 - MER81 DNA DNA -4 110 4 195 42 0 0 chr4 178354371 178354395 -23973952 + (T)n Simple_repeat Simple_repeat 1 24 0 272 228 76 33 chr4 178355403 178355495 -23972852 - L1MB8 LINE L1 -2129 5679 5584 901 184 41 0 chr4 178356068 178356215 -23972132 - AluJb SINE Alu -23 289 137 23 54 0 0 chr4 178356889 178356926 -23971421 + AT_rich Low_complexity Low_complexity 1 37 0 682 151 62 18 chr4 178356932 178357079 -23971268 + L1MC2 LINE L1 5997 6132 -212 1245 128 33 33 chr4 178357116 178357359 -23970988 + L1MC2 LINE L1 6102 6344 0 2137 125 3 13 chr4 178358612 178358923 -23969424 + AluSx SINE Alu 1 308 -4 1177 126 11 0 chr4 178358923 178359097 -23969250 + AluSg/x SINE Alu 132 307 -3 3393 119 16 4 chr4 178359189 178359694 -23968653 + MER9 LTR ERVK 1 511 0 2286 102 3 3 chr4 178360158 178360462 -23967885 + AluSx SINE Alu 1 304 -8 464 200 45 65 chr4 178360866 178361021 -23967326 - L1ME4a LINE L1 -1 6120 5969 250 221 24 63 chr4 178361138 178361159 -23967188 - L1MA4A LINE L1 0 6303 6283 1051 211 73 27 chr4 178361159 178361420 -23966927 - L1PB4 LINE L1 -4 6152 5880 464 186 29 0 chr4 178361395 178361497 -23966850 - L1ME4a LINE L1 -1986 5822 5718 * 2359 94 0 3 chr4 178362591 178362898 -23965449 - AluSq SINE Alu -7 306 1 1634 161 61 0 chr4 178363232 178363493 -23964854 + AluJb SINE Alu 15 291 -21 29 70 0 0 chr4 178363493 178363550 -23964797 + AT_rich Low_complexity Low_complexity 1 57 0 415 204 19 0 chr4 178364004 178364112 -23964235 - L1MB8 LINE L1 -2 6176 6067 22 0 0 0 chr4 178365151 178365173 -23963174 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 178366857 178366878 -23961469 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 178366964 178366989 -23961358 + AT_rich Low_complexity Low_complexity 1 25 0 1642 181 14 7 chr4 178366989 178367277 -23961070 - AluJo SINE Alu -22 290 1 1206 144 62 0 chr4 178367606 178367800 -23960547 + MER2 DNA MER2_type 1 206 -139 4178 125 23 45 chr4 178367859 178368585 -23959762 - L1PA15 LINE L1 0 6165 5456 226 306 0 0 chr4 178368708 178368780 -23959567 + (TG)n Simple_repeat Simple_repeat 2 73 0 2194 100 21 0 chr4 178368797 178369116 -23959231 + AluSp SINE Alu 1 313 0 632 257 96 48 chr4 178369132 178369381 -23958966 - MIR SINE MIR -1 261 1 1764 169 0 20 chr4 178370626 178370928 -23957419 + AluJo SINE Alu 1 296 -16 510 283 65 11 chr4 178371034 178371218 -23957129 + MIR SINE MIR 30 223 -39 2156 128 3 3 chr4 178371443 178371755 -23956592 + AluSx SINE Alu 1 312 0 1817 167 0 26 chr4 178372192 178372523 -23955824 - AluJo SINE Alu 0 312 1 388 150 100 0 chr4 178372556 178372636 -23955711 - ORSL DNA AcHobo -111 164 77 1238 121 19 29 chr4 178372644 178372850 -23955497 - L1PA16 LINE L1 0 6166 5963 2152 102 0 7 chr4 178373035 178373353 -23954994 + AluSx SINE Alu 1 316 0 22 0 0 0 chr4 178373377 178373399 -23954948 + AT_rich Low_complexity Low_complexity 1 22 0 302 304 27 36 chr4 178373624 178373736 -23954611 - L2 LINE L2 -195 3077 2967 195 390 14 20 chr4 178373821 178373967 -23954380 - L2 LINE L2 -429 2885 2741 206 31 0 31 chr4 178373968 178374000 -23954347 + (TTG)n Simple_repeat Simple_repeat 2 32 0 420 88 0 0 chr4 178374004 178374061 -23954286 - Alu SINE Alu -16 296 240 316 260 8 39 chr4 178374300 178374427 -23953920 + LTR67 LTR ERVL 428 550 -7 345 253 107 13 chr4 178374429 178374579 -23953768 - MIR SINE MIR -34 228 65 2287 92 3 0 chr4 178374912 178375204 -23953143 - AluSc SINE Alu -16 293 1 255 253 24 0 chr4 178376294 178376377 -23951970 - AluS SINE Alu -218 85 1 1265 87 0 4 chr4 178376404 178376623 -23951724 + AluSx SINE Alu 2 301 -9 1828 163 7 0 chr4 178377005 178377299 -23951048 - AluJo SINE Alu -16 296 1 268 143 121 66 chr4 178377966 178378057 -23950290 - MLT1K LTR MaLR -2 586 491 824 292 89 35 chr4 178379242 178379998 -23948349 + L2 LINE L2 2496 3294 -19 2442 88 3 0 chr4 178380031 178380336 -23948011 + AluSp SINE Alu 1 306 -7 23 68 0 0 chr4 178380370 178380414 -23947933 + AT_rich Low_complexity Low_complexity 1 44 0 1837 168 3 26 chr4 178380424 178380734 -23947613 + AluJo SINE Alu 1 303 -9 676 219 82 4 chr4 178380943 178381107 -23947240 - MLT1G1 LTR MaLR 0 595 354 335 261 18 45 chr4 178381228 178381339 -23947008 - MLT1F1 LTR MaLR -447 120 13 1767 155 26 42 chr4 178381421 178381731 -23946616 + AluJo SINE Alu 3 307 -5 618 167 87 16 chr4 178381745 178381871 -23946476 + FLAM_C SINE Alu 9 143 0 1419 210 80 43 chr4 178382088 178382661 -23945686 - MER76 LTR ERV 0 688 24 2326 88 3 3 chr4 178382680 178382986 -23945361 - AluSx SINE Alu -6 306 1 2370 119 0 0 chr4 178383573 178383885 -23944462 + AluSx SINE Alu 1 312 0 2341 82 26 0 chr4 178385381 178385685 -23942662 - AluSx SINE Alu 0 312 1 417 41 0 0 chr4 178386013 178386062 -23942285 + AluSc SINE Alu 214 262 -47 * 507 163 38 0 chr4 178386060 178386140 -23942207 + FLAM_C SINE Alu 35 117 -26 182 36 0 36 chr4 178386140 178386168 -23942179 + (TAAAA)n Simple_repeat Simple_repeat 1 27 0 255 294 322 0 chr4 178386546 178386723 -23941624 - L2 LINE L2 -479 2835 2602 242 183 233 0 chr4 178387048 178387108 -23941239 + L2 LINE L2 3231 3304 -9 435 248 80 0 chr4 178387865 178387978 -23940369 - L2 LINE L2 -4 3309 3188 225 310 86 23 chr4 178388465 178388639 -23939708 - MER5A DNA MER1_type 0 189 5 1401 274 80 28 chr4 178389096 178389808 -23938539 + L2 LINE L2 2333 3006 -307 2263 117 3 3 chr4 178389808 178390115 -23938232 - AluSg SINE Alu -3 307 1 2478 84 0 0 chr4 178390115 178390412 -23937935 - AluSx SINE Alu -14 298 1 1401 274 80 28 chr4 178390412 178390581 -23937766 + L2 LINE L2 3005 3313 0 397 299 100 26 chr4 178390600 178390831 -23937516 + L2 LINE L2 3065 3312 -1 1747 151 24 31 chr4 178390854 178391145 -23937202 + AluJo SINE Alu 2 290 -22 182 357 8 40 chr4 178391151 178391277 -23937070 - MIR SINE MIR -122 140 19 2386 95 0 3 chr4 178391312 178391616 -23936731 + AluSx SINE Alu 1 303 -9 1778 128 4 4 chr4 178391816 178392073 -23936274 - AluSx SINE Alu -12 300 44 307 292 39 23 chr4 178392124 178392254 -23936093 + L2 LINE L2 3170 3301 -12 454 391 22 6 chr4 178392606 178392926 -23935421 - L2 LINE L2 -730 2584 2260 869 145 0 47 chr4 178393141 178393313 -23935034 - FRAM SINE Alu 0 166 3 1769 179 0 20 chr4 178393643 178393945 -23934402 + AluJb SINE Alu 1 296 -16 2335 98 0 3 chr4 178393947 178394252 -23934095 + AluSc SINE Alu 1 304 -5 2353 100 3 0 chr4 178394892 178395193 -23933154 - AluSp SINE Alu -11 302 1 2244 102 10 3 chr4 178395198 178395501 -23932846 - AluSx SINE Alu -6 306 2 1589 133 30 0 chr4 178396923 178397156 -23931191 + AluSx SINE Alu 3 242 -70 1958 115 0 7 chr4 178397203 178397498 -23930849 - L1MA2 LINE L1 -1 6303 6011 1979 101 67 0 chr4 178397876 178398144 -23930203 + AluSq SINE Alu 2 287 -26 2530 79 0 0 chr4 178398296 178398601 -23929746 + AluSp SINE Alu 1 305 -8 1707 151 70 4 chr4 178399510 178399818 -23928529 - AluJo SINE Alu 0 326 1 1988 238 87 17 chr4 178400248 178400765 -23927582 + MER69 DNA AcHobo 17 569 -1957 719 223 77 59 chr4 178400762 178400849 -23927498 + MER69 DNA AcHobo 2011 2095 -431 * 2180 123 3 3 chr4 178400849 178401157 -23927190 + AluSx SINE Alu 1 308 -4 719 223 77 59 chr4 178401157 178401356 -23926991 + MER69 DNA AcHobo 2095 2302 -224 1255 96 12 0 chr4 178401359 178401526 -23926821 + AluSg/x SINE Alu 137 305 -7 726 208 135 5 chr4 178401526 178401733 -23926614 + MER69 DNA AcHobo 2293 2526 0 2170 107 10 10 chr4 178401831 178402129 -23926218 + AluSq SINE Alu 1 298 -15 1887 159 0 13 chr4 178402137 178402446 -23925901 + AluJo SINE Alu 2 306 -6 2030 121 4 0 chr4 178402676 178402940 -23925407 - AluSg SINE Alu -45 265 1 25 31 0 0 chr4 178403007 178403039 -23925308 + AT_rich Low_complexity Low_complexity 1 32 0 927 48 87 0 chr4 178403254 178403380 -23924967 + MER85 DNA T2_type 1 137 -2 1387 70 43 0 chr4 178403456 178403642 -23924705 - MER30 DNA MER1_type -33 197 4 730 184 24 0 chr4 178403713 178403838 -23924509 + FLAM_A SINE Alu 2 129 -4 1168 64 0 7 chr4 178403844 178403985 -23924362 + AluY SINE Alu 1 140 -171 2428 68 0 10 chr4 178403985 178404279 -23924068 + AluY SINE Alu 1 291 -20 2300 98 0 7 chr4 178405201 178405497 -23922850 + AluSc SINE Alu 1 294 -15 2264 113 0 0 chr4 178405741 178406033 -23922314 + AluSx SINE Alu 1 292 -20 1940 202 18 0 chr4 178406991 178407387 -23920960 + MER57A LTR ERV1 1 403 0 817 174 65 0 chr4 178407390 178407528 -23920819 - AluJb SINE Alu -30 282 136 1156 329 102 49 chr4 178407616 178408570 -23919777 - L3 LINE CR1 -76 1501 498 859 296 42 87 chr4 178408581 178409158 -23919189 + LTR67 LTR ERVL 6 556 -1 583 372 55 13 chr4 178409164 178409562 -23918785 - L3 LINE CR1 -1085 492 78 444 138 0 0 chr4 178409841 178409906 -23918441 - MLT1A1 LTR MaLR 0 365 301 1734 111 0 0 chr4 178409909 178410135 -23918212 + AluSq SINE Alu 1 226 -87 934 114 0 8 chr4 178410135 178410267 -23918080 + AluSg/x SINE Alu 165 295 -17 1229 197 57 30 chr4 178410270 178410534 -23917813 - MLT1A1 LTR MaLR -60 305 35 270 116 0 0 chr4 178410575 178410618 -23917729 + (A)n Simple_repeat Simple_repeat 1 43 0 340 143 0 0 chr4 178410620 178410669 -23917678 - MLT1A1 LTR MaLR -315 50 2 738 187 15 8 chr4 178410927 178411061 -23917286 + AluJo SINE Alu 2 136 -176 2306 81 7 0 chr4 178411074 178411380 -23916967 + AluSp SINE Alu 1 308 0 236 135 0 0 chr4 178411439 178411476 -23916871 - AluSx SINE Alu -9 291 255 1966 113 4 0 chr4 178411510 178411767 -23916580 - AluSx SINE Alu -54 258 1 2052 140 0 0 chr4 178412187 178412473 -23915874 - AluJb SINE Alu -26 286 1 917 108 8 0 chr4 178413566 178413696 -23914651 + FLAM_C SINE Alu 1 131 -2 2470 59 0 0 chr4 178414388 178414678 -23913669 + AluY SINE Alu 16 305 -6 2296 109 3 0 chr4 178414715 178415026 -23913321 + AluSx SINE Alu 1 312 0 2075 119 28 0 chr4 178415102 178415387 -23912960 - AluSg SINE Alu -17 293 1 2255 97 13 6 chr4 178415388 178415699 -23912648 - AluSp SINE Alu 0 313 1 826 106 8 8 chr4 178415783 178415906 -23912441 + FLAM_C SINE Alu 1 123 -20 494 151 0 0 chr4 178417100 178417173 -23911174 + LTR10E LTR ERV1 540 612 -21 2346 104 0 10 chr4 178417223 178417531 -23910816 - AluSq SINE Alu -8 305 1 394 324 27 0 chr4 178417532 178417643 -23910704 - MLT1J LTR MaLR -290 221 108 1950 126 7 17 chr4 178417645 178417946 -23910401 - AluSx SINE Alu -10 302 5 2656 49 0 0 chr4 178418036 178418342 -23910005 - AluY SINE Alu -5 306 1 196 315 14 27 chr4 178419749 178419822 -23908525 - MIR SINE MIR -107 101 30 22 0 0 0 chr4 178420632 178420654 -23907693 + AT_rich Low_complexity Low_complexity 1 22 0 2606 201 30 17 chr4 178423727 178424260 -23904087 + MLT1F LTR MaLR 1 540 -2 240 199 48 97 chr4 178424824 178424917 -23903430 + MIR3 SINE MIR 79 167 -41 1653 194 21 0 chr4 178425160 178425444 -23902903 - AluJb SINE Alu -22 290 1 209 283 65 11 chr4 178426301 178426393 -23901954 + L2 LINE L2 2512 2608 -706 1825 128 0 4 chr4 178426404 178426654 -23901693 - AluSg SINE Alu -20 290 42 1829 146 65 14 chr4 178427331 178427687 -23900660 + L1MB3 LINE L1 5810 6183 0 204 158 0 0 chr4 178427719 178427757 -23900590 + A-rich Low_complexity Low_complexity 1 38 0 2172 99 0 53 chr4 178428968 178429290 -23899057 - AluSg1 SINE Alu -3 306 2 2115 117 10 10 chr4 178430675 178430975 -23897372 + AluSx SINE Alu 1 300 -12 1796 143 29 0 chr4 178431678 178431951 -23896396 + AluJo SINE Alu 12 292 -20 1418 95 16 0 chr4 178481981 178482171 -23846176 + AluSq SINE Alu 106 298 -15 385 284 134 3 chr4 178483197 178483489 -23844858 + L1MEc LINE L1 1362 1691 -4705 300 275 141 7 chr4 178483733 178483875 -23844472 + MIR SINE MIR 84 244 -18 583 194 0 79 chr4 178484846 178485022 -23843325 + FRAM SINE Alu 1 40 0 519 285 0 22 chr4 178486362 178486499 -23841848 - L2 LINE L2 -1 3271 3138 626 70 100 0 chr4 178487480 178487580 -23840767 + L1PA12 LINE L1 6059 6168 0 2267 75 3 31 chr4 178487948 178488266 -23840081 + AluY SINE Alu 3 311 0 1582 181 44 4 chr4 178488436 178488707 -23839640 - AluJo SINE Alu -28 284 3 459 0 0 0 chr4 178488738 178488789 -23839558 + (TG)n Simple_repeat Simple_repeat 2 52 0 413 139 91 133 chr4 178489000 178489165 -23839182 + MLT1J LTR MaLR 6 163 -304 276 191 0 0 chr4 178490318 178490365 -23837982 - AluSq/x SINE Alu -187 115 69 3601 116 62 26 chr4 178490446 178491058 -23837289 + MER51A LTR ERV1 1 634 0 443 309 39 27 chr4 178491930 178492186 -23836161 + MLT1J LTR MaLR 237 495 -16 1384 116 0 15 chr4 178492186 178492384 -23835963 + AluSg/x SINE Alu 106 300 -12 2292 107 10 0 chr4 178492386 178492694 -23835653 + AluSx SINE Alu 1 311 -1 341 325 68 8 chr4 178493670 178493787 -23834560 - L2 LINE L2 0 3313 3190 648 179 8 0 chr4 178493944 178494061 -23834286 + AluJb SINE Alu 1 118 -194 189 0 0 0 chr4 178494065 178494086 -23834261 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 182 219 0 0 chr4 178494164 178494196 -23834151 + L2 LINE L2 3190 3221 -92 189 211 115 19 chr4 178494519 178494571 -23833776 + L2 LINE L2 3243 3299 -14 219 36 0 0 chr4 178494574 178494602 -23833745 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 273 393 95 32 chr4 178496638 178496923 -23831424 - L3 LINE CR1 -1204 373 71 1673 170 38 0 chr4 178497865 178498130 -23830217 - AluJo SINE Alu -35 277 3 270 310 81 23 chr4 178498134 178498221 -23830126 - L2 LINE L2 -25 3288 3197 1007 206 0 101 chr4 178498252 178498578 -23829769 - L1ME3 LINE L1 -260 5902 5610 547 302 34 0 chr4 178498648 178498797 -23829550 + MIR3 SINE MIR 32 185 -23 1184 73 136 91 chr4 178499773 178499993 -23828354 - MER30 DNA MER1_type 0 230 1 294 217 0 17 chr4 178500299 178500359 -23827988 - L1ME3 LINE L1 -2144 5664 5606 1918 138 0 23 chr4 178500530 178500696 -23827651 - AluSx SINE Alu -14 298 141 2308 96 0 19 chr4 178500696 178501008 -23827339 - AluY SINE Alu -5 306 1 1918 138 0 23 chr4 178501008 178501146 -23827201 - AluSx SINE Alu -171 141 1 205 171 0 0 chr4 178501186 178501221 -23827126 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 1065 224 21 3 chr4 178502041 178502331 -23826016 - MER33 DNA MER1_type 0 324 30 272 319 16 66 chr4 178502892 178503074 -23825273 + MIR SINE MIR 46 218 -44 425 205 62 36 chr4 178503095 178503207 -23825140 + MIR3 SINE MIR 58 172 -36 210 305 85 12 chr4 178503347 178503429 -23824918 - L2 LINE L2 -5 3267 3180 2683 170 54 6 chr4 178503922 178504458 -23823889 + L1PB4 LINE L1 5589 6150 -6 206 101 76 13 chr4 178504458 178504537 -23823810 + (TA)n Simple_repeat Simple_repeat 1 84 0 754 56 0 0 chr4 178504540 178504630 -23823717 - AluSg SINE Alu -212 98 9 23 0 0 0 chr4 178504643 178504666 -23823681 + AT_rich Low_complexity Low_complexity 1 23 0 398 156 33 61 chr4 178504666 178504846 -23823501 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 259 223 40 17 chr4 178504798 178504973 -23823374 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 * 221 96 104 0 chr4 178504997 178505122 -23823225 + (TA)n Simple_repeat Simple_repeat 1 138 0 2290 89 7 0 chr4 178505123 178505416 -23822931 - AluSg SINE Alu -15 295 1 22 0 0 0 chr4 178505416 178505438 -23822909 + AT_rich Low_complexity Low_complexity 1 22 0 231 339 84 29 chr4 178505561 178505800 -23822547 - L2 LINE L2 -1490 1824 1573 33 0 0 0 chr4 178506827 178506860 -23821487 + AT_rich Low_complexity Low_complexity 1 33 0 258 155 56 0 chr4 178509056 178509127 -23819220 + L1MA10 LINE L1 6258 6332 -2 1413 124 59 15 chr4 178509248 178509521 -23818826 - L1MA8 LINE L1 -3 6288 6004 497 202 11 0 chr4 178509601 178509695 -23818652 - MER2 DNA MER2_type -250 95 1 285 161 81 16 chr4 178510020 178510082 -23818265 - L2 LINE L2 -2 3311 3246 406 274 0 1 chr4 178510303 178510404 -23817943 - MIR SINE MIR -97 111 10 210 348 43 0 chr4 178510434 178510526 -23817821 - L2 LINE L2 -229 3084 2989 2314 98 3 0 chr4 178511346 178511641 -23816706 + AluSq SINE Alu 1 296 -17 327 326 5 88 chr4 178513407 178513600 -23814747 + L2 LINE L2 2881 3057 -215 266 268 37 12 chr4 178513911 178513993 -23814354 - L2 LINE L2 0 3313 3230 221 278 19 0 chr4 178516157 178516211 -23812136 - L2 LINE L2 -65 3207 3153 220 284 11 84 chr4 178516592 178516622 -23811725 - L2 LINE L2 0 3272 3241 2097 144 10 0 chr4 178516622 178516927 -23811420 - AluSx SINE Alu -2 310 3 220 284 11 84 chr4 178516927 178516991 -23811356 - L2 LINE L2 -31 3241 3185 418 293 59 80 chr4 178517105 178517526 -23810821 - L2 LINE L2 -212 3060 2637 261 57 0 0 chr4 178518266 178518301 -23810046 + (GA)n Simple_repeat Simple_repeat 2 36 0 484 233 291 21 chr4 178518357 178518546 -23809801 + MIR SINE MIR 2 241 -21 180 111 0 0 chr4 178518558 178518585 -23809762 + (CAT)n Simple_repeat Simple_repeat 1 27 0 1614 146 89 7 chr4 178520788 178521068 -23807279 + AluSx SINE Alu 1 303 -9 387 318 24 86 chr4 178522882 178523137 -23805210 + L2 LINE L2 2991 3229 -43 421 194 0 33 chr4 178524290 178524525 -23803822 + AluSx SINE Alu 1 293 -19 873 232 113 30 chr4 178524686 178525121 -23803226 + L1ME2 LINE L1 4825 5295 -851 1139 252 118 5 chr4 178526051 178526456 -23801891 + L1ME2 LINE L1 5318 5768 -396 793 270 24 8 chr4 178526513 178526761 -23801586 + L1ME2 LINE L1 5904 6155 -9 1466 193 0 11 chr4 178526784 178527053 -23801294 + AluJo SINE Alu 40 305 -7 628 265 203 13 chr4 178527287 178527661 -23800686 + L3b LINE CR1 1102 1546 -37 2224 135 0 0 chr4 178528205 178528517 -23799830 + AluSx SINE Alu 1 312 0 22 35 0 0 chr4 178528583 178528612 -23799735 + AT_rich Low_complexity Low_complexity 1 29 0 902 154 0 0 chr4 178528618 178528754 -23799593 - AluJ SINE Alu -12 300 165 181 314 71 0 chr4 178529463 178529533 -23798814 + L2 LINE L2 3148 3222 -50 417 318 57 57 chr4 178529717 178529887 -23798460 + HAL1 LINE L1 1153 1325 -1182 1712 182 94 19 chr4 178529887 178530260 -23798087 + MER57A LTR ERV1 3 403 0 417 318 57 57 chr4 178530260 178530385 -23797962 + HAL1 LINE L1 1324 1448 -1059 237 349 57 6 chr4 178530415 178530590 -23797757 + HAL1 LINE L1 1502 1685 -822 246 174 37 64 chr4 178530876 178530985 -23797362 + HAL1b LINE L1 743 848 -500 2693 140 15 9 chr4 178531058 178531516 -23796831 + HERVL-A2 LTR ERVL 5194 5654 0 492 151 156 91 chr4 178531519 178531705 -23796642 + MLT2A2 LTR ERVL 5 202 -251 1778 163 7 3 chr4 178532965 178533253 -23795094 - AluJo SINE Alu -23 289 1 540 163 189 20 chr4 178533260 178533413 -23794934 - MER5A DNA MER1_type -2 187 9 218 262 238 0 chr4 178533436 178533562 -23794785 + L2 LINE L2 2066 2221 -1093 594 204 58 87 chr4 178533569 178533741 -23794606 + MER5B DNA MER1_type 7 173 -5 * 1228 257 154 39 chr4 178533709 178534569 -23793778 + L2 LINE L2 2177 3138 -175 924 158 63 129 chr4 178534721 178535113 -23793234 + MLT1A2 LTR MaLR 20 374 0 341 297 51 76 chr4 178535145 178535381 -23792966 + L3 LINE CR1 580 809 -768 2059 134 7 3 chr4 178535431 178535730 -23792617 - AluSx SINE Alu -12 300 1 659 208 62 90 chr4 178535773 178535817 -23792530 - AluJ SINE Alu -139 173 129 216 0 0 0 chr4 178535817 178535841 -23792506 + (TTG)n Simple_repeat Simple_repeat 3 26 0 659 208 62 90 chr4 178535841 178535974 -23792373 - AluJ SINE Alu -183 129 1 184 213 33 0 chr4 178536726 178536787 -23791560 + (TA)n Simple_repeat Simple_repeat 1 63 0 1919 151 47 0 chr4 178536863 178537161 -23791186 + AluSx SINE Alu 1 312 0 347 333 142 7 chr4 178537274 178537415 -23790932 - MIR3 SINE MIR -4 204 45 1756 207 78 35 chr4 178537883 178538367 -23789980 + MLT1D LTR MaLR 1 505 0 22 0 0 0 chr4 178539598 178539620 -23788727 + AT_rich Low_complexity Low_complexity 1 22 0 2374 84 0 3 chr4 178540147 178540445 -23787902 - AluSc SINE Alu -7 302 6 638 219 77 86 chr4 178540732 178540965 -23787382 + L2 LINE L2 3083 3313 0 314 148 0 0 chr4 178541703 178541764 -23786583 + MLT1D LTR MaLR 445 505 0 254 375 18 9 chr4 178543187 178543299 -23785048 + MIR SINE MIR 20 132 -130 9098 194 80 7 chr4 178543393 178545861 -23782486 + L1 LINE L1 2769 5425 -726 3006 86 13 2 chr4 178545860 178546314 -23782033 + L1PB1 LINE L1 5333 5791 -360 * 320 84 8 76 chr4 178546331 178546450 -23781897 + (TA)n Simple_repeat Simple_repeat 2 112 0 2484 113 3 8 chr4 178546450 178546822 -23781525 + L1PB1 LINE L1 5776 6145 -6 1417 241 78 49 chr4 178547727 178548378 -23779969 - L1ME3A LINE L1 -1 6238 5569 860 297 36 37 chr4 178548653 178549384 -23778963 - L1ME3A LINE L1 -4655 1741 1012 1568 138 130 11 chr4 178549445 178549714 -23778633 - AluSx SINE Alu 0 302 2 1042 188 19 10 chr4 178549839 178550046 -23778301 - MER6B DNA MER2_type 0 210 2 237 311 29 0 chr4 178550274 178550377 -23777970 - L1ME3A LINE L1 -5953 252 147 1404 147 19 0 chr4 178550618 178550829 -23777518 - AluSg/x SINE Alu -24 286 72 1916 101 0 4 chr4 178550929 178551177 -23777170 - AluSx SINE Alu -65 247 1 6503 131 59 11 chr4 178551357 178551889 -23776458 + Tigger3b DNA MER2_type 1 506 -2522 2317 82 0 13 chr4 178551889 178552193 -23776154 - AluSc SINE Alu -9 300 1 6503 131 59 11 chr4 178552193 178552241 -23776106 + Tigger3b DNA MER2_type 506 550 -2478 1662 175 21 12 chr4 178552241 178552578 -23775769 + L1PB4 LINE L1 5817 6156 0 6503 131 59 11 chr4 178552578 178552834 -23775513 + Tigger3b DNA MER2_type 550 792 -2236 203 61 30 0 chr4 178552834 178552867 -23775480 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 6503 131 59 11 chr4 178552867 178553203 -23775144 + Tigger3b DNA MER2_type 792 1231 0 2504 65 0 3 chr4 178553830 178554140 -23774207 - AluY SINE Alu 0 311 3 1935 136 10 36 chr4 178554281 178554589 -23773758 + AluJo SINE Alu 1 300 -12 416 287 118 62 chr4 178554601 178554749 -23773598 - L1MC4a LINE L1 -1898 5910 5772 1354 148 63 79 chr4 178554749 178555066 -23773281 - AluJb SINE Alu 0 312 1 416 287 118 62 chr4 178555066 178555366 -23772981 - L1MC4a LINE L1 -2036 5772 5437 375 157 0 0 chr4 178555395 178555465 -23772882 + (TG)n Simple_repeat Simple_repeat 1 70 0 2172 109 3 0 chr4 178555465 178555771 -23772576 - AluSq SINE Alu 0 307 1 1784 138 33 0 chr4 178555781 178556056 -23772291 - AluSx SINE Alu -28 284 1 1817 118 10 34 chr4 178556150 178556447 -23771900 - AluJb SINE Alu -18 294 5 270 154 0 0 chr4 178556600 178556652 -23771695 - L1MC4 LINE L1 -5 8037 7986 799 216 197 49 chr4 178556654 178556828 -23771519 - L1MC4 LINE L1 -140 7902 7755 3164 104 48 69 chr4 178556828 178557366 -23770981 - MER1A DNA MER1_type 0 527 1 799 216 197 49 chr4 178557366 178557866 -23770481 - L1MC4 LINE L1 -287 7755 6980 2131 93 99 9 chr4 178558234 178558578 -23769769 - THE1C LTR MaLR 0 375 1 313 241 139 15 chr4 178558782 178558919 -23769428 - L1MEd LINE L1 -2937 3192 3039 704 101 9 28 chr4 178558920 178559029 -23769318 - AluSx SINE Alu -6 306 200 1056 140 0 0 chr4 178559029 178559179 -23769168 - AluSx SINE Alu -162 150 1 532 328 71 56 chr4 178559183 178559343 -23769004 - L1MEd LINE L1 -3106 3023 2867 2012 134 0 50 chr4 178559343 178559663 -23768684 - AluSx SINE Alu -8 304 1 532 328 71 56 chr4 178559663 178560110 -23768237 - L1MEd LINE L1 -3262 2867 2377 2187 83 28 7 chr4 178560183 178560471 -23767876 - AluSx SINE Alu -17 295 2 2125 117 0 0 chr4 178560536 178560841 -23767506 - AluSx SINE Alu 0 305 1 649 342 58 42 chr4 178560908 178561467 -23766880 - L1MEd LINE L1 -957 1533 868 852 122 0 82 chr4 178561752 178561899 -23766448 - FLAM_C SINE Alu -8 135 1 245 155 0 17 chr4 178562006 178562064 -23766283 + MER53 DNA DNA 97 153 -36 1316 158 5 9 chr4 178562064 178562285 -23766062 - AluJo SINE Alu -9 303 84 2056 117 10 7 chr4 178562343 178562642 -23765705 + AluSx SINE Alu 1 300 -12 307 314 88 5 chr4 178562973 178563167 -23765180 + HAL1 LINE L1 1564 1773 -734 317 309 31 0 chr4 178563173 178563270 -23765077 + HAL1 LINE L1 1804 1903 -604 7684 140 72 14 chr4 178563620 178565427 -23762920 + L1MC1 LINE L1 7 2014 -4412 5169 253 20 49 chr4 178565428 178567113 -23761234 + L1MC1 LINE L1 3592 5224 -1202 2193 133 3 0 chr4 178567113 178567422 -23760925 + AluSg SINE Alu 1 310 0 5169 253 20 49 chr4 178567422 178567496 -23760851 + L1MC1 LINE L1 5224 5299 -1127 * 15004 154 15 13 chr4 178567484 178568094 -23760253 + L1MA3 LINE L1 2170 2777 -3528 2363 96 0 13 chr4 178568094 178568396 -23759951 + AluSg SINE Alu 1 298 -12 15004 154 15 13 chr4 178568396 178571436 -23756911 + L1MA3 LINE L1 2777 5832 -473 2245 122 0 0 chr4 178571436 178571732 -23756615 + AluSg SINE Alu 1 296 -14 15004 154 15 13 chr4 178571732 178572199 -23756148 + L1MA3 LINE L1 5832 6297 -8 1215 155 26 35 chr4 178572233 178572393 -23755954 + L1MC1 LINE L1 5303 5463 -1063 2264 115 7 0 chr4 178572393 178572689 -23755658 - AluSx SINE Alu -14 298 1 1215 155 26 35 chr4 178572689 178573016 -23755331 + L1MC1 LINE L1 5463 5781 -745 1874 184 107 41 chr4 178573020 178573508 -23754839 - MLT2B1 LTR ERVL 0 520 1 3022 156 82 54 chr4 178573508 178574227 -23754120 - ERVL-B1 LTR ERVL -7 5757 5019 343 82 0 0 chr4 178574224 178574273 -23754074 + ERVL LTR ERVL 4920 4968 -796 * 4878 150 7 0 chr4 178574279 178575091 -23753256 + L1MC1 LINE L1 5796 6613 0 231 125 0 0 chr4 178575097 178575137 -23753210 + (CA)n Simple_repeat Simple_repeat 2 41 0 636 219 0 8 chr4 178575231 178575350 -23752997 + FLAM_A SINE Alu 1 118 -15 21 36 0 0 chr4 178575363 178575391 -23752956 + AT_rich Low_complexity Low_complexity 1 28 0 296 266 145 0 chr4 178575393 178575517 -23752830 + MIR SINE MIR 120 261 -1 325 280 174 0 chr4 178577025 178577157 -23751190 - MIR3 SINE MIR -17 191 37 531 315 82 4 chr4 178577182 178577439 -23750908 + Tigger8 DNA MER2_type 30 306 -360 24 0 0 0 chr4 178578116 178578140 -23750207 + AT_rich Low_complexity Low_complexity 1 24 0 284 330 43 0 chr4 178579935 178580029 -23748318 - L2 LINE L2 0 3272 3175 222 312 184 0 chr4 178580081 178580190 -23748157 - MIR SINE MIR -60 148 20 210 318 0 0 chr4 178580426 178580489 -23747858 + MIR SINE MIR 91 153 -109 315 151 55 14 chr4 178580493 178580566 -23747781 + AluJ/FRAM SINE Alu 224 299 -3 257 217 29 0 chr4 178580975 178581044 -23747303 + L1ME3A LINE L1 6095 6165 -5 188 278 0 69 chr4 178581301 178581329 -23747018 + MIR SINE MIR 125 153 -109 2179 126 0 0 chr4 178581329 178581631 -23746716 + AluSx SINE Alu 1 302 -10 188 278 0 69 chr4 178581631 178581674 -23746673 + MIR SINE MIR 153 191 -71 2070 162 18 3 chr4 178583040 178583423 -23744924 - MLT1B LTR MaLR -1 389 1 255 296 49 170 chr4 178583747 178584241 -23744106 + L2 LINE L2 2834 3267 -5 2058 122 3 10 chr4 178584426 178584720 -23743627 - AluSq SINE Alu -21 292 1 552 170 0 11 chr4 178585598 178585692 -23742655 - FLAM_A SINE Alu -32 110 18 23 97 0 0 chr4 178586964 178587036 -23741311 + AT_rich Low_complexity Low_complexity 1 72 0 219 140 60 0 chr4 178587357 178587407 -23740940 + (CATA)n Simple_repeat Simple_repeat 3 55 0 21 0 0 0 chr4 178587571 178587592 -23740755 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 178589781 178589802 -23738545 + GC_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr4 178590036 178590072 -23738275 + GC_rich Low_complexity Low_complexity 1 36 0 264 292 56 0 chr4 178591272 178591344 -23737003 - MIR SINE MIR -19 243 168 374 298 81 0 chr4 178591623 178591747 -23736600 - MIR3 SINE MIR -68 140 7 225 94 0 0 chr4 178591988 178592020 -23736327 + (T)n Simple_repeat Simple_repeat 1 32 0 294 149 0 0 chr4 178592123 178592170 -23736177 + Alu SINE Alu 247 293 -9 225 292 95 54 chr4 178592367 178592535 -23735812 - MIR SINE MIR 0 262 88 717 301 123 42 chr4 178592637 178593043 -23735304 + L2 LINE L2 2367 2805 -509 330 308 91 28 chr4 178593119 178593262 -23735085 + L2 LINE L2 3156 3307 -6 812 226 72 14 chr4 178593776 178593997 -23734350 + MIR SINE MIR 29 262 0 381 276 72 39 chr4 178594006 178594187 -23734160 + MIR SINE MIR 70 256 -6 209 242 136 0 chr4 178594207 178594273 -23734074 + MIR3 SINE MIR 108 182 -26 1937 136 20 3 chr4 178594628 178594922 -23733425 - AluJb SINE Alu -13 299 1 336 277 189 19 chr4 178595003 178595162 -23733185 - MER5A DNA MER1_type -1 188 3 270 219 41 55 chr4 178595789 178595862 -23732485 - L3b LINE CR1 -98 1485 1414 2183 119 0 0 chr4 178596195 178596533 -23731814 - AluSx SINE Alu 0 338 1 2035 144 0 10 chr4 178597843 178598160 -23730187 + AluSx SINE Alu 1 314 0 187 30 30 30 chr4 178598162 178598195 -23730152 + (TA)n Simple_repeat Simple_repeat 2 34 0 527 167 60 181 chr4 178598285 178598376 -23729971 + MIR SINE MIR 12 64 -198 2092 122 3 0 chr4 178598376 178598672 -23729675 + AluSp SINE Alu 3 299 -14 527 167 60 181 chr4 178598672 178598796 -23729551 + MIR SINE MIR 64 201 -61 21 0 0 0 chr4 178598811 178598832 -23729515 + AT_rich Low_complexity Low_complexity 1 21 0 724 292 143 9 chr4 178599068 178599410 -23728937 - MLT1J2 LTR MaLR -21 429 42 231 314 90 25 chr4 178599649 178600006 -23728341 + L1M4 LINE L1 2170 2549 -3597 397 264 121 17 chr4 178600047 178600278 -23728069 + L1M4 LINE L1 2676 2930 -3216 367 300 77 59 chr4 178601694 178601851 -23726496 + MIR SINE MIR 23 192 -58 233 224 172 0 chr4 178601947 178602005 -23726342 - L2 LINE L2 -4 3309 3242 400 82 35 118 chr4 178602817 178602902 -23725445 - MER103 DNA DNA -81 85 8 2107 140 0 0 chr4 178603052 178603352 -23724995 + AluJb SINE Alu 1 300 -12 276 326 12 12 chr4 178603634 178603720 -23724627 + MIR SINE MIR 20 105 -157 208 227 23 0 chr4 178603769 178603813 -23724534 + L2 LINE L2 3251 3295 -18 2243 102 3 7 chr4 178604329 178604633 -23723714 - AluSc SINE Alu -6 303 1 757 180 0 16 chr4 178606184 178606312 -23722035 + AluJo SINE Alu 11 136 -176 205 278 144 31 chr4 178606361 178606458 -23721889 - L2 LINE L2 -10 3262 3155 1525 185 10 86 chr4 178606636 178606745 -23721602 + AluJo SINE Alu 1 117 -195 1552 175 19 11 chr4 178606745 178607014 -23721333 - AluJo SINE Alu -14 298 28 1525 185 10 86 chr4 178607014 178607217 -23721130 + AluJo SINE Alu 117 289 -23 186 133 0 0 chr4 178608710 178608740 -23719607 + (A)n Simple_repeat Simple_repeat 1 30 0 2240 103 3 0 chr4 178608795 178609087 -23719260 + AluSx SINE Alu 5 297 -15 467 289 65 81 chr4 178609124 178609384 -23718963 + L2 LINE L2 2996 3251 -21 206 271 235 12 chr4 178609408 178609493 -23718854 + MIR SINE MIR 49 152 -110 1868 159 3 23 chr4 178609576 178609877 -23718470 - AluJb SINE Alu -15 297 3 1893 168 71 13 chr4 178610370 178610751 -23717596 + MER57A LTR ERV1 1 403 0 2478 85 0 0 chr4 178610988 178611294 -23717053 + AluY SINE Alu 5 310 -1 2468 91 3 0 chr4 178611836 178612145 -23716202 - AluSp SINE Alu -1 312 3 2128 161 25 2 chr4 178612318 178612723 -23715624 - L1MC1 LINE L1 -1 6332 5919 6372 196 42 31 chr4 178612725 178613828 -23714519 - L1MC1 LINE L1 -581 5752 4662 2640 151 36 2 chr4 178613828 178614240 -23714107 + MSTB LTR MaLR 1 426 0 6372 196 42 31 chr4 178614240 178615428 -23712919 - L1MC1 LINE L1 -1671 4662 3444 1829 170 0 0 chr4 178615610 178615887 -23712460 - AluJb SINE Alu -35 277 1 496 267 0 9 chr4 178616343 178616459 -23711888 + FLAM_C SINE Alu 2 116 -17 2014 138 3 39 chr4 178616652 178616963 -23711384 + AluJb SINE Alu 1 300 -12 810 152 76 27 chr4 178617469 178617653 -23710694 + L1MB3 LINE L1 5991 6183 0 21 0 0 0 chr4 178617911 178617932 -23710415 + AT_rich Low_complexity Low_complexity 1 21 0 238 135 83 6 chr4 178617935 178618091 -23710256 + (TA)n Simple_repeat Simple_repeat 1 168 0 324 80 105 6 chr4 178618128 178618290 -23710057 + (TA)n Simple_repeat Simple_repeat 2 179 0 2045 128 0 7 chr4 178621965 178622254 -23706093 + AluSx SINE Alu 1 287 -25 260 127 18 0 chr4 178622254 178622309 -23706038 + (TA)n Simple_repeat Simple_repeat 1 56 0 272 223 161 80 chr4 178623291 178623403 -23704944 - L2 LINE L2 0 3313 3193 551 279 202 12 chr4 178623446 178623768 -23704579 - L2 LINE L2 -107 3206 2824 508 252 82 122 chr4 178623976 178624105 -23704242 - L2 LINE L2 -498 2816 2683 2411 84 0 0 chr4 178624105 178624401 -23703946 - AluSx SINE Alu -16 296 1 508 252 82 122 chr4 178624401 178624600 -23703747 - L2 LINE L2 -631 2683 2501 196 293 70 64 chr4 178624610 178624767 -23703580 - L2 LINE L2 -433 2881 2724 366 314 65 51 chr4 178624927 178625220 -23703127 - L2 LINE L2 -854 2460 2164 202 291 110 53 chr4 178625257 178625631 -23702716 - L2 LINE L2 -1300 2014 1620 1827 184 3 0 chr4 178626668 178626973 -23701374 + AluJo SINE Alu 1 306 -6 1790 189 80 22 chr4 178628035 178628486 -23699861 - MLT1D LTR MaLR -7 498 22 207 0 0 0 chr4 178628734 178628757 -23699590 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 341 133 0 0 chr4 178628906 178628966 -23699381 - Alu SINE Alu -3 299 240 2080 111 24 0 chr4 178629707 178630005 -23698342 + AluSx SINE Alu 1 305 -7 2161 122 10 0 chr4 178630364 178630660 -23697687 + AluSx SINE Alu 5 303 -9 697 269 24 0 chr4 178630821 178630988 -23697359 + MIR SINE MIR 92 262 0 2233 107 0 0 chr4 178631069 178631359 -23696988 + AluSg SINE Alu 1 290 -20 27 0 0 0 chr4 178631359 178631386 -23696961 + AT_rich Low_complexity Low_complexity 1 27 0 229 358 83 17 chr4 178631574 178631694 -23696653 - L2 LINE L2 -4 3309 3182 246 327 5 63 chr4 178632139 178632335 -23696012 - MIR SINE MIR -56 206 22 2192 130 0 3 chr4 178632750 178633058 -23695289 + AluSx SINE Alu 1 307 -5 331 257 0 0 chr4 178633251 178633325 -23695022 - MIR SINE MIR -2 260 187 698 153 24 161 chr4 178633908 178634162 -23694185 + MER20 DNA MER1_type 1 219 0 1017 157 40 58 chr4 178634575 178634798 -23693549 - MER20 DNA MER1_type 0 219 1 813 250 49 61 chr4 178635132 178635396 -23692951 - MIR SINE MIR 0 262 2 2063 122 37 0 chr4 178635470 178635765 -23692582 - AluSq SINE Alu -7 306 1 183 286 0 0 chr4 178635876 178635925 -23692422 + MIR SINE MIR 24 72 -190 626 289 86 35 chr4 178635941 178636280 -23692067 + MLT1I LTR MaLR 40 395 -14 948 215 11 6 chr4 178636289 178636466 -23691881 + MIR SINE MIR 69 246 -16 706 186 0 0 chr4 178637143 178637261 -23691086 + FLAM_C SINE Alu 1 118 -15 1316 156 52 99 chr4 178637616 178638001 -23690346 + MER31B LTR ERV1 100 466 0 216 340 145 19 chr4 178638757 178638916 -23689431 - L3 LINE CR1 -1398 179 1 2011 128 7 10 chr4 178639523 178639819 -23688528 + AluSx SINE Alu 1 295 -17 1848 158 3 10 chr4 178639980 178640283 -23688064 - AluJb SINE Alu -11 301 1 856 172 66 10 chr4 178640373 178640571 -23687776 - L1MA8 LINE L1 -12 6279 6071 2421 50 0 0 chr4 178640733 178641046 -23687301 + AluY SINE Alu 1 313 0 23 78 0 0 chr4 178641870 178641921 -23686426 + AT_rich Low_complexity Low_complexity 1 51 0 705 245 5 43 chr4 178642251 178642359 -23685988 - MER5A DNA MER1_type -9 180 80 1821 156 101 16 chr4 178642359 178642724 -23685623 + MSTD LTR MaLR 1 396 0 705 245 5 43 chr4 178642724 178642799 -23685548 - MER5A DNA MER1_type -109 80 4 1879 117 0 0 chr4 178643050 178643329 -23685018 + AluSx SINE Alu 36 314 0 6880 65 11 7 chr4 178647543 178648458 -23679889 + L1PA8 LINE L1 5254 6172 0 1107 174 65 115 chr4 178648644 178648730 -23679617 + MLT1A1 LTR MaLR 1 90 -275 2496 62 0 3 chr4 178648730 178649036 -23679311 + AluY SINE Alu 1 305 -6 1107 174 65 115 chr4 178649036 178649333 -23679014 + MLT1A1 LTR MaLR 90 365 0 1368 243 44 66 chr4 178650338 178650874 -23677473 - L2 LINE L2 0 3313 2786 644 315 65 31 chr4 178654594 178654950 -23673397 + L3b LINE CR1 1114 1481 -102 23 0 0 0 chr4 178655052 178655075 -23673272 + AT_rich Low_complexity Low_complexity 1 23 0 501 62 0 0 chr4 178655383 178655448 -23672899 + (CA)n Simple_repeat Simple_repeat 2 66 0 1838 171 0 3 chr4 178655552 178655850 -23672497 - AluJo SINE Alu -13 299 3 466 188 8 8 chr4 178656004 178656121 -23672226 + GA-rich Low_complexity Low_complexity 4 120 0 241 290 159 34 chr4 178656121 178656239 -23672108 - MIR3 SINE MIR -29 179 42 1716 137 33 52 chr4 178656369 178656675 -23671672 - AluJo SINE Alu 0 312 13 423 269 156 18 chr4 178656762 178656983 -23671364 - MIR SINE MIR -7 255 12 509 265 8 0 chr4 178657144 178657276 -23671071 - MER94 DNA DNA 0 134 2 25 31 0 0 chr4 178757802 178757834 -23570513 + AT_rich Low_complexity Low_complexity 1 32 0 2587 155 111 22 chr4 178758349 178760826 -23567521 + SATR1 Satellite Satellite 1 2696 -24 412 374 49 0 chr4 178761956 178762159 -23566188 - MIR SINE MIR -49 213 1 2105 118 20 10 chr4 178763368 178763674 -23564673 + AluSg SINE Alu 1 309 -1 2027 138 0 23 chr4 178764247 178764551 -23563796 + AluSx SINE Alu 1 297 -15 266 274 202 12 chr4 178765289 178765373 -23562974 - L2 LINE L2 -5 3267 3168 2232 122 0 0 chr4 178765550 178765862 -23562485 - AluSx SINE Alu 0 312 1 606 274 18 18 chr4 178765918 178766082 -23562265 - MIR SINE MIR -54 208 45 989 114 20 13 chr4 178766569 178766718 -23561629 + AluSq/x SINE Alu 1 150 -162 358 253 72 17 chr4 178767072 178767244 -23561103 + L1ME3A LINE L1 5678 5863 -303 422 288 154 32 chr4 178767273 178767558 -23560789 + L1MC4a LINE L1 5947 6266 -1542 1031 181 0 45 chr4 178767627 178767826 -23560521 + AluJo SINE Alu 1 190 -122 635 200 156 105 chr4 178768041 178768546 -23559801 + L1MC5 LINE L1 6650 7180 -781 1964 154 7 0 chr4 178768701 178768999 -23559348 + AluSx SINE Alu 1 300 -12 1621 184 13 17 chr4 178769229 178769528 -23558819 - AluJo SINE Alu -14 298 1 4194 181 56 47 chr4 178769745 178770841 -23557506 + Charlie1a DNA MER1_type 2 1106 -349 1159 264 115 53 chr4 178771193 178771897 -23556450 - L2 LINE L2 -1815 1499 685 2050 149 0 3 chr4 178771897 178772198 -23556149 - AluSx SINE Alu -12 300 1 1159 264 115 53 chr4 178772198 178772253 -23556094 - L2 LINE L2 -2629 685 635 2120 86 41 0 chr4 178774126 178774418 -23553929 - AluSq SINE Alu -9 304 1 1000 125 0 31 chr4 178775904 178776064 -23552283 + AluSg/x SINE Alu 143 297 -13 21 0 0 0 chr4 178776317 178776338 -23552009 + AT_rich Low_complexity Low_complexity 1 21 0 1897 133 0 10 chr4 178777443 178777745 -23550602 - AluSq SINE Alu -14 299 1 202 182 0 0 chr4 178778029 178778062 -23550285 + (CCCG)n Simple_repeat Simple_repeat 3 35 0 2244 145 104 5 chr4 178778940 178780685 -23547662 + SATR1 Satellite Satellite 1 1919 -122 22 0 0 0 chr4 178782030 178782052 -23546295 + AT_rich Low_complexity Low_complexity 1 22 0 543 237 6 85 chr4 178785512 178785568 -23542779 - MIR SINE MIR 0 262 203 1391 174 23 43 chr4 178785568 178785898 -23542449 - AluJo SINE Alu 0 312 1 543 237 6 85 chr4 178785898 178786018 -23542329 - MIR SINE MIR -59 203 100 212 281 0 18 chr4 178787675 178787732 -23540615 - L2 LINE L2 0 3272 3217 453 227 86 0 chr4 178788345 178788508 -23539839 - MER112 DNA MER1_type 0 260 84 2198 59 0 4 chr4 178788617 178788890 -23539457 - AluY SINE Alu -35 276 5 5647 76 7 3 chr4 178789201 178789976 -23538371 - L1PA8 LINE L1 -1 6171 5394 * 5966 104 14 15 chr4 178789973 178790946 -23537401 + L1PA8 LINE L1 4418 5389 -757 995 177 12 0 chr4 178791318 178791482 -23536865 - FRAM SINE Alu -12 164 1 408 278 62 91 chr4 178792217 178792467 -23535880 + MIR SINE MIR 5 262 0 591 196 8 53 chr4 178792507 178792640 -23535707 + FLAM_A SINE Alu 1 127 -6 207 0 0 0 chr4 178792758 178792781 -23535566 + (A)n Simple_repeat Simple_repeat 1 23 0 2052 122 20 0 chr4 178792786 178793080 -23535267 + AluSg SINE Alu 1 300 -10 1090 178 85 12 chr4 178793563 178793821 -23534526 + L1M4 LINE L1 4885 5161 -985 870 272 45 0 chr4 178793876 178794100 -23534247 - MIR SINE MIR 0 262 29 607 85 0 85 chr4 178794723 178794829 -23533518 - AluSg/x SINE Alu 0 312 216 2097 167 65 12 chr4 178795691 178796121 -23532226 - MSTB2 LTR MaLR 0 457 5 200 298 0 0 chr4 178796492 178796549 -23531798 + L2 LINE L2 3251 3307 -6 28 29 0 0 chr4 178796602 178796637 -23531710 + AT_rich Low_complexity Low_complexity 1 35 0 625 269 91 77 chr4 178796749 178797113 -23531234 - MLT1J2 LTR MaLR -15 431 63 329 357 31 0 chr4 178797318 178797447 -23530900 - MIR3 SINE MIR -46 162 30 1258 146 8 8 chr4 178797679 178797919 -23530428 - L1MA9 LINE L1 -5 6307 6068 355 310 37 16 chr4 178797950 178798195 -23530152 + L1ME LINE L1 5569 5818 -303 24 85 0 0 chr4 178798360 178798419 -23529928 + AT_rich Low_complexity Low_complexity 1 59 0 875 145 0 0 chr4 178798423 178798547 -23529800 - FLAM_C SINE Alu -9 124 1 391 296 113 0 chr4 178799027 178799142 -23529205 + L2 LINE L2 3145 3272 0 243 250 39 0 chr4 178799217 178799269 -23529078 - L2 LINE L2 -11 3261 3208 2072 131 20 0 chr4 178800140 178800438 -23527909 - AluSx SINE Alu -8 304 1 21 36 0 0 chr4 178801125 178801153 -23527194 + AT_rich Low_complexity Low_complexity 1 28 0 1761 199 0 0 chr4 178801168 178801469 -23526878 - AluSx SINE Alu -11 301 1 775 144 0 8 chr4 178801888 178802006 -23526341 + FLAM_C SINE Alu 1 117 -16 718 285 43 10 chr4 178802130 178802337 -23526010 + MIR SINE MIR 1 214 -48 4693 140 48 14 chr4 178802355 178803229 -23525118 + L1MA7 LINE L1 5387 6290 -1 235 266 47 0 chr4 178803521 178803585 -23524762 + MER5A DNA MER1_type 123 189 0 430 277 200 0 chr4 178803594 178803749 -23524598 + MER5A DNA MER1_type 4 189 0 231 235 314 18 chr4 178803752 178803861 -23524486 + MIR3 SINE MIR 15 165 -43 227 333 138 0 chr4 178803897 178804020 -23524327 - MIR SINE MIR -121 141 2 2424 87 0 0 chr4 178805019 178805318 -23523029 - AluSc SINE Alu -8 301 3 428 221 227 0 chr4 178805402 178805574 -23522773 + MER58C DNA MER1_type 1 211 -4 900 153 34 6 chr4 178805681 178805858 -23522489 - MER2 DNA MER2_type -136 209 28 1942 148 3 16 chr4 178806490 178806795 -23521552 + AluJb SINE Alu 1 301 -11 2021 126 0 4 chr4 178807761 178808039 -23520308 + AluSq SINE Alu 37 313 0 204 262 139 25 chr4 178808077 178808199 -23520148 + MIR SINE MIR 113 248 -14 337 126 105 21 chr4 178808825 178808920 -23519427 - Charlie5 DNA MER1_type -55 2557 2455 1387 131 138 72 chr4 178808978 178809269 -23519078 + AluJo SINE Alu 1 310 -2 1725 71 0 0 chr4 178809911 178810121 -23518226 + AluSg/x SINE Alu 103 312 0 442 256 138 59 chr4 178810143 178810346 -23518001 - MIR SINE MIR -32 230 12 3060 46 0 0 chr4 178811580 178811950 -23516397 + L1PA5 LINE L1 5782 6151 -3 21 0 0 0 chr4 178811974 178811995 -23516352 + AT_rich Low_complexity Low_complexity 1 21 0 331 191 137 24 chr4 178812174 178812342 -23516005 + L1ME LINE L1 5292 5478 -2330 249 284 63 31 chr4 178812414 178812541 -23515806 + L1ME LINE L1 5615 5745 -376 329 274 80 9 chr4 178813069 178813182 -23515165 + MIR SINE MIR 87 207 -55 2459 49 0 0 chr4 178815312 178815600 -23512747 + AluY SINE Alu 1 288 -23 1773 143 48 27 chr4 178815620 178815914 -23512433 + AluSx SINE Alu 1 300 -12 815 203 43 48 chr4 178816041 178816248 -23512099 - AluJo SINE Alu -106 206 1 1932 264 167 15 chr4 178816305 178817194 -23511153 + L2 LINE L2 2050 3069 -244 220 286 0 32 chr4 178817382 178817445 -23510902 + L2 LINE L2 3251 3311 -2 1510 151 4 15 chr4 178819013 178819272 -23509075 + AluJb SINE Alu 1 256 -56 24 91 0 0 chr4 178819918 178819984 -23508363 + AT_rich Low_complexity Low_complexity 1 66 0 297 0 0 0 chr4 178820571 178820604 -23507743 + (GA)n Simple_repeat Simple_repeat 2 34 0 1989 99 27 27 chr4 178821631 178821947 -23506400 - AluSg SINE Alu 0 310 1 438 253 40 33 chr4 178825138 178825288 -23503059 - MER103 DNA DNA 0 166 16 704 135 36 9 chr4 178825880 178825991 -23502356 + FRAM SINE Alu 43 156 -20 634 277 84 21 chr4 178826186 178826424 -23501923 + MIR SINE MIR 8 260 -2 2710 65 6 8 chr4 178826581 178826937 -23501410 + THE1A LTR MaLR 1 355 0 186 333 32 0 chr4 178827875 178827938 -23500409 + L2 LINE L2 3234 3298 -15 2049 110 7 3 chr4 178828344 178828626 -23499721 + AluSx SINE Alu 18 300 -12 1837 150 3 45 chr4 178829089 178829313 -23499034 - MLT1B LTR MaLR 0 390 183 2115 143 0 6 chr4 178829313 178829627 -23498720 - AluSx SINE Alu 0 312 1 1837 150 3 45 chr4 178829627 178829735 -23498612 - MLT1B LTR MaLR -207 183 72 3141 135 23 128 chr4 178829735 178830396 -23497951 - MER4D LTR ERV1 0 903 174 393 22 0 0 chr4 178830396 178830442 -23497905 + (TA)n Simple_repeat Simple_repeat 2 47 0 2100 113 7 10 chr4 178830442 178830733 -23497614 - AluSg SINE Alu -20 290 1 3141 135 23 128 chr4 178830733 178830865 -23497482 - MER4D LTR ERV1 -727 176 78 2783 157 15 8 chr4 178830872 178831349 -23496998 + MER21A-int LTR ERV1 3712 4191 0 1191 151 118 8 chr4 178831349 178831587 -23496760 + MER21A LTR ERV1 1 264 -667 2027 158 42 22 chr4 178831588 178831948 -23496399 + MER21A LTR ERV1 371 737 -194 397 210 60 20 chr4 178831974 178832074 -23496273 + MER20B DNA MER1_type 2 105 -678 402 188 0 104 chr4 178832148 178832244 -23496103 + MER21B LTR ERV1 12 97 -766 3373 204 29 33 chr4 178832250 178832373 -23495974 + MER21B LTR ERV1 19 141 -722 1852 134 43 40 chr4 178832373 178832746 -23495601 + THE1C LTR MaLR 1 374 -1 3373 204 29 33 chr4 178832746 178833346 -23495001 + MER21B LTR ERV1 141 739 -124 1522 186 34 27 chr4 178834612 178834907 -23493440 + AluJb SINE Alu 1 297 -15 2105 85 50 0 chr4 178835125 178835407 -23492940 + AluSq SINE Alu 1 296 -17 233 275 46 9 chr4 178835564 178835673 -23492674 + L1M4c LINE L1 2025 2137 -4247 557 231 26 0 chr4 178835784 178835901 -23492446 + FLAM_A SINE Alu 1 120 -13 1683 194 0 3 chr4 178836210 178836503 -23491844 + AluJb SINE Alu 2 293 -19 378 150 293 7 chr4 178836524 178836664 -23491683 + L1MA7 LINE L1 6111 6290 -1 808 217 11 6 chr4 178836745 178836920 -23491427 - AluJo SINE Alu -97 215 40 21 0 0 0 chr4 178836992 178837013 -23491334 + AT_rich Low_complexity Low_complexity 1 21 0 1951 135 24 3 chr4 178837084 178837373 -23490974 - AluSx SINE Alu -17 295 1 363 251 17 22 chr4 178837661 178837840 -23490507 + (TA)n Simple_repeat Simple_repeat 1 178 0 24 0 0 0 chr4 178839026 178839050 -23489297 + AT_rich Low_complexity Low_complexity 1 24 0 1285 173 41 25 chr4 178840445 178840688 -23487659 + AluJo SINE Alu 1 247 -65 646 175 7 36 chr4 178840753 178840890 -23487457 - FLAM_A SINE Alu 0 133 1 467 274 89 34 chr4 178841178 178841357 -23486990 - MIR SINE MIR -17 245 57 218 341 127 16 chr4 178841717 178841843 -23486504 + L2 LINE L2 3121 3260 -12 593 212 15 0 chr4 178843107 178843239 -23485108 + L1PB2 LINE L1 6018 6151 0 2424 199 24 0 chr4 178843444 178843901 -23484446 + Tigger1 DNA MER2_type 1 468 -1950 1106 171 24 33 chr4 178843904 178844115 -23484232 - AluJo SINE Alu -103 209 1 1764 112 159 0 chr4 178844190 178844486 -23483861 + Tigger1 DNA MER2_type 1162 1504 -914 4025 176 14 12 chr4 178844491 178845224 -23483123 + MER50 LTR ERV1 1 734 0 * 4991 119 46 7 chr4 178845224 178846020 -23482327 + Tigger1 DNA MER2_type 1506 2332 -86 2065 129 0 0 chr4 178846139 178846425 -23481922 - AluSg SINE Alu -24 286 1 1973 200 44 48 chr4 178846864 178847363 -23480984 + MLT1D LTR MaLR 7 503 -2 531 238 247 9 chr4 178847370 178847593 -23480754 + MLT1G LTR MaLR 10 285 -305 202 269 0 0 chr4 178847595 178847647 -23480700 + GA-rich Low_complexity Low_complexity 1 52 0 1090 110 50 6 chr4 178847739 178847921 -23480426 + L1MA3 LINE L1 6109 6298 -7 505 267 74 34 chr4 178847950 178848126 -23480221 + MLT1G LTR MaLR 378 560 -7 1880 143 42 14 chr4 178849260 178849617 -23478730 + L1MA6 LINE L1 5934 6300 0 1005 60 0 0 chr4 178849804 178849951 -23478396 + AluSp/q SINE Alu 168 314 0 402 93 0 0 chr4 178849967 178850021 -23478326 + AluSg/x SINE Alu 84 137 -173 21 0 0 0 chr4 178850293 178850314 -23478033 + AT_rich Low_complexity Low_complexity 1 21 0 2333 92 0 0 chr4 178850966 178851261 -23477086 - AluSq SINE Alu -18 295 1 23 0 0 0 chr4 178851357 178851380 -23476967 + AT_rich Low_complexity Low_complexity 1 23 0 880 219 103 18 chr4 178851386 178851610 -23476737 + MIR SINE MIR 13 255 -7 192 357 14 0 chr4 178852096 178852166 -23476181 + MIR SINE MIR 16 86 -122 583 339 39 12 chr4 178852229 178852483 -23475864 + MIR SINE MIR 2 262 0 22 65 0 0 chr4 178853437 178853468 -23474879 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 178854051 178854072 -23474275 + AT_rich Low_complexity Low_complexity 1 21 0 1933 122 3 61 chr4 178854502 178854814 -23473533 + AluSx SINE Alu 1 294 -18 2228 104 3 22 chr4 178855374 178855690 -23472657 + AluSx SINE Alu 1 310 -2 795 265 44 16 chr4 178857556 178857805 -23470542 + MIR SINE MIR 4 259 -3 418 358 60 0 chr4 178857812 178857963 -23470384 - MIR3 SINE MIR -18 190 31 831 144 0 15 chr4 178858433 178858565 -23469782 - FLAM_C SINE Alu -3 130 1 2297 98 0 0 chr4 178859149 178859444 -23468903 + AluSg SINE Alu 1 295 -15 1372 35 6 0 chr4 178859528 178859697 -23468650 - L1PA4 LINE L1 0 6155 5986 1291 142 73 21 chr4 178859798 178860086 -23468261 + Charlie1 DNA MER1_type 2459 2761 0 1539 158 4 30 chr4 178860345 178860610 -23467737 + AluSx SINE Alu 36 293 -19 1104 176 0 0 chr4 178860634 178860821 -23467526 + AluSg/x SINE Alu 126 312 0 9445 57 13 112 chr4 178861709 178863245 -23465102 + SVA Other Other 1 1384 -2 521 239 103 82 chr4 178863286 178863712 -23464635 + LTR37B LTR ERV1 1 435 -33 812 290 62 12 chr4 178863734 178864055 -23464292 + L1MC4a LINE L1 5328 5664 -2144 966 221 36 0 chr4 178864173 178864368 -23463979 - MER58A DNA MER1_type -22 202 1 35 41 0 0 chr4 178864494 178864543 -23463804 + AT_rich Low_complexity Low_complexity 1 49 0 1474 172 68 40 chr4 178864860 178865156 -23463191 + AluJb SINE Alu 1 304 -8 330 303 37 50 chr4 178865390 178865621 -23462726 + L1MC4a LINE L1 5782 6017 -104 1685 163 35 0 chr4 178866616 178866899 -23461448 + AluJb SINE Alu 1 293 -19 23 0 0 0 chr4 178866974 178866997 -23461350 + AT_rich Low_complexity Low_complexity 1 23 0 1816 186 64 49 chr4 178867329 178867796 -23460551 + L1MC4 LINE L1 7445 7918 -124 565 184 50 0 chr4 178867857 178867991 -23460356 + L1MC4 LINE L1 7668 7783 -2 2113 107 0 4 chr4 178868696 178869005 -23459342 + AluSg SINE Alu 1 308 0 1110 172 0 0 chr4 178869219 178869388 -23458959 + AluSx SINE Alu 1 169 -143 2713 161 147 16 chr4 178869516 178873751 -23454596 + SATR1 Satellite Satellite 1 4790 -120 1295 177 283 3 chr4 178873783 178874453 -23453894 + SATR1 Satellite Satellite 1 857 -97 212 94 19 57 chr4 178874453 178874506 -23453841 + (TTATA)n Simple_repeat Simple_repeat 4 54 0 403 195 97 65 chr4 178874514 178874668 -23453679 + SATR1 Satellite Satellite 233 391 -79 8086 29 3 0 chr4 178874762 178876127 -23452220 - L1PA3 LINE L1 -1 6154 4786 8851 23 0 0 chr4 178876127 178877133 -23451214 + L1PA3 LINE L1 3784 4789 -1357 2045 133 0 10 chr4 178877139 178877448 -23450899 - AluSx SINE Alu -6 306 1 987 181 0 22 chr4 178877769 178877951 -23450396 + AluJb SINE Alu 129 306 -6 198 0 0 0 chr4 178878338 178878360 -23449987 + (TG)n Simple_repeat Simple_repeat 1 22 0 1674 140 7 51 chr4 178878380 178878673 -23449674 - AluSx SINE Alu -32 280 1 205 250 31 16 chr4 178878924 178878988 -23449359 - L2 LINE L2 0 3272 3208 1669 148 18 14 chr4 178879129 178879406 -23448941 + AluJo SINE Alu 21 298 -14 346 155 12 12 chr4 178879424 178879508 -23448839 + GA-rich Low_complexity Low_complexity 1 84 0 455 96 14 14 chr4 178880540 178880613 -23447734 + MADE1 DNA Mariner 1 73 -7 1672 115 8 8 chr4 178881136 178881388 -23446959 - AluSx SINE Alu -3 309 58 1036 98 0 0 chr4 178881490 178881623 -23446724 - AluSp SINE Alu -180 133 1 234 62 0 0 chr4 178881623 178881655 -23446692 + (T)n Simple_repeat Simple_repeat 1 32 0 227 236 34 45 chr4 178882057 178882146 -23446201 - MIR SINE MIR -100 162 75 181 340 53 21 chr4 178882429 178882523 -23445824 + L2 LINE L2 2939 3035 -237 1051 208 206 18 chr4 178882642 178883036 -23445311 - Charlie1a DNA MER1_type -495 960 493 586 180 174 39 chr4 178883694 178883872 -23444475 - Charlie1a DNA MER1_type -945 510 309 535 211 0 0 chr4 178883894 178883984 -23444363 - FLAM_A SINE Alu -20 122 33 525 248 163 26 chr4 178883995 178884184 -23444163 - Charlie1a DNA MER1_type -1165 290 57 279 272 189 12 chr4 178884381 178884550 -23443797 - L1ME LINE L1 -315 5806 5608 28 29 0 0 chr4 178884876 178884911 -23443436 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 178885200 178885222 -23443125 + AT_rich Low_complexity Low_complexity 1 22 0 257 133 0 83 chr4 178885372 178885432 -23442915 - L2 LINE L2 -95 3218 3164 2126 120 3 7 chr4 178886587 178886886 -23441461 - AluSx SINE Alu -14 298 1 201 167 0 0 chr4 178887930 178887966 -23440381 + A-rich Low_complexity Low_complexity 1 36 0 307 326 99 17 chr4 178887966 178888138 -23440209 - MIR3 SINE MIR -7 201 16 530 231 138 36 chr4 178888259 178888454 -23439893 - MIR SINE MIR -46 216 2 2226 114 10 0 chr4 178889339 178889647 -23438700 + AluSx SINE Alu 1 311 -1 404 239 110 60 chr4 178890158 178890376 -23437971 - L1ME4a LINE L1 -223 5898 5670 1378 83 0 0 chr4 178890384 178890552 -23437795 - AluSg/x SINE Alu -10 299 132 260 206 155 10 chr4 178890809 178890906 -23437441 - L1MC4a LINE L1 -1884 5924 5814 2202 134 0 0 chr4 178891244 178891549 -23436798 - AluSx SINE Alu -7 305 1 1233 165 99 48 chr4 178891561 178891834 -23436513 - AluJo SINE Alu -25 287 1 932 164 128 5 chr4 178892908 178893103 -23435244 + MER20B DNA MER1_type 1 219 0 1307 27 27 0 chr4 178893137 178893287 -23435060 - L1PA4 LINE L1 -3 6152 5999 231 296 111 0 chr4 178893374 178893482 -23434865 + L1ME LINE L1 5688 5807 -355 1123 200 0 15 chr4 178893491 178893691 -23434656 - MER8 DNA MER2_type 0 239 43 709 266 97 17 chr4 178894329 178894566 -23433781 - MIR SINE MIR -5 257 2 710 221 154 5 chr4 178894728 178894923 -23433424 + MIR SINE MIR 37 260 -2 512 252 172 0 chr4 178896688 178896839 -23431508 + MER5A DNA MER1_type 11 187 -2 2194 224 127 88 chr4 178896845 178897272 -23431075 - HAL1 LINE L1 -668 1839 1430 2260 56 0 28 chr4 178897272 178897594 -23430753 - AluY SINE Alu 0 314 1 2194 224 127 88 chr4 178897594 178898382 -23429965 - HAL1 LINE L1 -1077 1430 575 1950 189 127 40 chr4 178898403 178898875 -23429472 - MLT2B1 LTR ERVL 0 520 8 2101 125 3 0 chr4 178898881 178899169 -23429178 + AluSx SINE Alu 3 291 -21 607 250 142 34 chr4 178899185 178899481 -23428866 - HAL1 LINE L1 -1945 562 235 1906 188 33 20 chr4 178899533 178899869 -23428478 - MLT1C LTR MaLR 0 467 124 2232 124 3 0 chr4 178899869 178900175 -23428172 - AluSx SINE Alu -5 307 1 1906 188 33 20 chr4 178900175 178900236 -23428111 - MLT1C LTR MaLR -343 124 65 580 179 4 232 chr4 178900520 178900766 -23427581 + LTR8 LTR ERV1 63 243 -448 377 198 112 0 chr4 178900821 178900937 -23427410 + MER20B DNA MER1_type 607 735 -48 932 211 158 53 chr4 178900972 178901314 -23427033 + LTR8A LTR ERV1 348 725 -2 519 200 136 13 chr4 178901404 178901559 -23426788 + MER20B DNA MER1_type 603 776 -7 185 339 66 8 chr4 178901561 178901682 -23426665 + L2 LINE L2 3186 3313 0 1951 141 3 3 chr4 178902175 178902513 -23425834 - AluSx SINE Alu 0 338 1 1115 288 99 5 chr4 178902560 178902942 -23425405 - LTR16A LTR ERVL 0 450 33 271 259 30 53 chr4 178904102 178904133 -23424214 - L1ME3A LINE L1 -249 5921 5891 1884 153 3 7 chr4 178904133 178904434 -23423913 - AluJb SINE Alu -12 300 1 271 259 30 53 chr4 178904434 178904533 -23423814 - L1ME3A LINE L1 -279 5891 5794 427 352 107 33 chr4 178904540 178905265 -23423082 + L2 LINE L2 2470 3254 -18 183 313 48 36 chr4 178905344 178905427 -23422920 + MIR3 SINE MIR 101 184 -24 689 256 68 11 chr4 178906431 178906622 -23421725 - MIR SINE MIR -11 251 50 1803 166 3 34 chr4 178907280 178907600 -23420747 + AluJo SINE Alu 1 310 -2 1040 117 37 6 chr4 178908011 178908173 -23420174 + AluSg/x SINE Alu 145 311 -1 696 192 52 29 chr4 178908174 178908346 -23420001 - MER53 DNA DNA -13 176 1 843 226 111 21 chr4 178908372 178908567 -23419780 + MIR SINE MIR 8 229 -33 1515 250 49 0 chr4 178908567 178908915 -23419432 - MLT1A1 LTR MaLR 0 365 1 843 226 111 21 chr4 178908915 178908953 -23419394 + MIR SINE MIR 229 262 0 180 312 91 0 chr4 178909320 178909397 -23418950 - MIR SINE MIR -84 124 41 470 324 6 35 chr4 178910131 178910304 -23418043 - MIR3 SINE MIR -6 202 35 234 0 0 0 chr4 178910314 178910340 -23418007 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1677 189 4 0 chr4 178910343 178910624 -23417723 - AluJo SINE Alu -30 282 1 895 190 0 0 chr4 178912212 178912370 -23415977 + L1ME1 LINE L1 5829 5986 -180 377 130 0 0 chr4 179012370 179012455 -23315892 + AluSp/q SINE Alu 233 317 0 341 133 67 0 chr4 179012458 179012518 -23315829 - MSTC LTR MaLR -364 64 1 2030 110 10 0 chr4 179012618 179012917 -23315430 - AluSx SINE Alu -10 302 1 1928 112 49 0 chr4 179013289 179013575 -23314772 - AluSg SINE Alu -10 300 1 21 36 0 0 chr4 179013845 179013873 -23314474 + AT_rich Low_complexity Low_complexity 1 28 0 1262 161 45 111 chr4 179014782 179014866 -23313481 + MER4C LTR ERV1 1 89 -376 207 0 0 0 chr4 179014866 179014889 -23313458 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1262 161 45 111 chr4 179014889 179015433 -23312914 + MER4C LTR ERV1 89 462 -3 2243 195 73 29 chr4 179015529 179016077 -23312270 + LTR49 LTR ERV1 1 572 -23 1595 169 28 36 chr4 179016093 179016513 -23311834 + LTR49-int LTR ERV1 12 1329 -4617 770 194 12 6 chr4 179016525 179016675 -23311672 + LTR49-int LTR ERV1 1330 1452 -4494 706 194 19 31 chr4 179016718 179016878 -23311469 + LTR49-int LTR ERV1 447 604 -5727 683 162 48 72 chr4 179016875 179017042 -23311305 + LTR49-int LTR ERV1 768 930 -5401 * 1734 179 88 0 chr4 179017153 179017460 -23310887 + MSTD LTR MaLR 60 393 -3 8792 17 3 184 chr4 179017939 179019776 -23308571 + SVA Other Other 1 1403 0 307 0 0 0 chr4 179019776 179019810 -23308537 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 392 183 0 52 chr4 179019811 179019926 -23308421 - AluJ/FLAM SINE Alu -236 66 1 3411 100 51 0 chr4 179020725 179021195 -23307152 - MER1A DNA MER1_type -1 528 35 251 269 15 0 chr4 179021937 179022004 -23306343 + L2 LINE L2 3242 3309 -4 308 218 109 30 chr4 179022410 179022511 -23305836 - MIR SINE MIR -48 214 106 2812 151 56 56 chr4 179022511 179022662 -23305685 - Tigger1 DNA MER2_type -1850 568 418 1888 150 4 0 chr4 179022662 179022942 -23305405 - AluJb SINE Alu -11 301 21 2812 151 56 56 chr4 179022942 179022955 -23305392 - Tigger1 DNA MER2_type -2000 418 406 252 0 0 0 chr4 179022955 179022983 -23305364 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 1794 107 0 141 chr4 179022983 179023309 -23305038 - AluSx SINE Alu -32 280 1 2812 151 56 56 chr4 179023309 179023710 -23304637 - Tigger1 DNA MER2_type -2010 408 1 259 278 139 95 chr4 179023716 179024009 -23304338 + L2 LINE L2 2858 3178 -135 2374 104 0 3 chr4 179024009 179024308 -23304039 - AluSx SINE Alu -14 298 1 259 278 139 95 chr4 179024308 179024446 -23303901 + L2 LINE L2 3178 3308 -5 473 58 29 0 chr4 179024658 179024727 -23303620 - L1MB7 LINE L1 0 6184 6114 2121 94 0 20 chr4 179024727 179025026 -23303321 + AluSq SINE Alu 20 312 -1 357 250 58 141 chr4 179025053 179025365 -23302982 - L2 LINE L2 -11 3261 2976 261 249 152 5 chr4 179025398 179025511 -23302836 - L1MC/D LINE L1 -458 5663 5607 200 229 42 0 chr4 179025812 179025860 -23302487 + C-rich Low_complexity Low_complexity 1 50 0 939 174 148 48 chr4 179025861 179026091 -23302256 - AluSx SINE Alu -59 253 1 233 351 35 9 chr4 179026536 179026650 -23301697 + L2 LINE L2 2968 3084 -229 930 232 73 114 chr4 179026654 179026786 -23301561 + L2 LINE L2 2626 2762 -551 1709 129 0 12 chr4 179026786 179027027 -23301320 - AluSg SINE Alu -65 245 8 930 232 73 114 chr4 179027027 179027175 -23301172 + L2 LINE L2 2762 2915 -398 2372 147 89 18 chr4 179027175 179027611 -23300736 + MLT1C LTR MaLR 1 467 0 930 232 73 114 chr4 179027611 179027817 -23300530 + L2 LINE L2 2915 3083 -230 2293 97 7 0 chr4 179027817 179028115 -23300232 + AluSc SINE Alu 1 300 -9 930 232 73 114 chr4 179028115 179028337 -23300010 + L2 LINE L2 3083 3313 0 2208 111 10 3 chr4 179028353 179028650 -23299697 + AluSx SINE Alu 1 299 -13 189 0 0 0 chr4 179028650 179028671 -23299676 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 240 35 0 0 chr4 179028670 179028699 -23299648 + (CA)n Simple_repeat Simple_repeat 2 30 0 2293 91 10 10 chr4 179029570 179029877 -23298470 - AluSq SINE Alu -6 307 1 254 293 44 88 chr4 179029979 179030184 -23298163 - L1ME LINE L1 -303 5818 5623 1053 238 87 106 chr4 179030189 179030660 -23297687 + MER77 LTR ERV1 6 467 -138 278 310 26 0 chr4 179031884 179032000 -23296347 + HAL1b LINE L1 1229 1347 -1 810 169 0 90 chr4 179032709 179032886 -23295461 - FRAM SINE Alu -12 164 4 21 36 0 0 chr4 179032954 179032982 -23295365 + AT_rich Low_complexity Low_complexity 1 28 0 228 343 79 14 chr4 179034350 179034490 -23293857 - L2 LINE L2 -238 3034 2886 587 264 129 51 chr4 179034611 179034982 -23293365 + MLT1J1 LTR MaLR 32 431 -15 22 0 0 0 chr4 179035909 179035931 -23292416 + AT_rich Low_complexity Low_complexity 1 22 0 340 277 107 29 chr4 179035964 179036206 -23292141 + L1ME4a LINE L1 5861 6121 0 934 255 63 0 chr4 179036223 179036462 -23291885 - MIR SINE MIR -2 260 7 1287 124 5 11 chr4 179037486 179037671 -23290676 - AluSg/x SINE Alu -17 295 112 29 0 0 0 chr4 179039219 179039248 -23289099 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr4 179039918 179039956 -23288391 + GC_rich Low_complexity Low_complexity 1 38 0 28 0 0 0 chr4 179040241 179040269 -23288078 + GC_rich Low_complexity Low_complexity 1 28 0 472 154 0 0 chr4 179043410 179043488 -23284859 + MLT1D LTR MaLR 85 162 -343 1041 208 60 26 chr4 179043501 179043766 -23284581 - MLT1D LTR MaLR -92 413 140 393 271 74 0 chr4 179043754 179043876 -23284471 + MLT1D LTR MaLR 375 505 0 * 262 236 55 0 chr4 179044411 179044466 -23283881 + MER117 DNA MER1_type 15 72 -125 209 200 0 88 chr4 179045712 179045792 -23282555 + G-rich Low_complexity Low_complexity 3 75 0 1820 155 14 0 chr4 179046860 179047137 -23281210 - AluJo SINE Alu -31 281 1 347 288 177 26 chr4 179049707 179050181 -23278166 - L2 LINE L2 -4 3309 2760 1273 135 0 11 chr4 179051824 179052009 -23276338 + AluSg/x SINE Alu 112 294 -18 21 57 0 0 chr4 179053071 179053106 -23275241 + AT_rich Low_complexity Low_complexity 1 35 0 223 206 286 16 chr4 179053586 179053712 -23274635 + MER5A DNA MER1_type 27 186 -3 1704 165 3 14 chr4 179055312 179055632 -23272715 - AluJo SINE Alu 0 317 1 185 208 42 0 chr4 179056497 179056545 -23271802 + L2 LINE L2 3256 3305 -8 25 0 0 0 chr4 179057367 179057392 -23270955 + AT_rich Low_complexity Low_complexity 1 25 0 1313 146 0 5 chr4 179061614 179061836 -23266511 + AluJb SINE Alu 85 305 0 1834 173 0 0 chr4 179062533 179062828 -23265519 + AluJo SINE Alu 2 296 -16 2618 172 176 65 chr4 179063248 179064070 -23264277 + MER52C LTR ERV1 199 1278 0 1784 125 43 0 chr4 179064682 179064938 -23263409 + AluSq SINE Alu 6 272 -41 32 0 0 0 chr4 179065069 179065101 -23263246 + AT_rich Low_complexity Low_complexity 1 32 0 244 179 0 0 chr4 179065260 179065299 -23263048 - MLT1C LTR MaLR -2 465 427 1129 136 11 5 chr4 179065364 179065548 -23262799 + MLT1C LTR MaLR 14 198 -269 650 209 92 8 chr4 179065545 179065742 -23262605 - MLT1C LTR MaLR -45 422 189 * 1869 154 7 0 chr4 179065836 179066136 -23262211 - AluSx SINE Alu 0 304 3 21 36 0 0 chr4 179068932 179068960 -23259387 + AT_rich Low_complexity Low_complexity 1 28 0 5343 45 8 5 chr4 179069109 179069771 -23258576 - L1PA4 LINE L1 -4 6151 5488 38678 43 3 5 chr4 179069873 179075942 -23252405 + L1PA3 LINE L1 105 6152 -3 10158 70 4 3 chr4 179076802 179078162 -23250185 - HERV17 LTR ERV1 -4836 3790 2430 8884 68 10 18 chr4 179078147 179079409 -23248938 - HERV17 LTR ERV1 -6612 2014 763 * 5189 71 7 17 chr4 179079596 179080310 -23248037 - HERV17 LTR ERV1 -7919 707 1 3240 81 54 39 chr4 179080310 179080827 -23247520 - LTR17 LTR ERV1 0 780 256 560 224 71 0 chr4 179080875 179081045 -23247302 + MER58A DNA MER1_type 42 223 -1 1748 167 29 13 chr4 179081448 179081754 -23246593 - AluJb SINE Alu -1 311 1 3334 145 34 16 chr4 179083286 179084382 -23243965 + L1PA13 LINE L1 4705 5820 -348 2290 101 16 27 chr4 179084632 179084997 -23243350 + L1PA13 LINE L1 5799 6159 -4 195 316 0 18 chr4 179085093 179085150 -23243197 - L2 LINE L2 -7 3306 3251 2119 247 17 34 chr4 179085882 179086695 -23241652 + L1M2 LINE L1 1524 2269 -4838 1809 139 169 21 chr4 179086695 179087068 -23241279 + MSTA LTR MaLR 1 428 0 2119 247 17 34 chr4 179087068 179087430 -23240917 + L1M2 LINE L1 2269 2635 -4472 * 5145 203 79 34 chr4 179087427 179087617 -23240730 + L1M2 LINE L1 4810 4990 -2163 3316 81 0 2 chr4 179087617 179088062 -23240285 - L1PA8 LINE L1 -10 6162 5719 5145 203 79 34 chr4 179088062 179088361 -23239986 + L1M2 LINE L1 4990 5274 -1879 1747 184 0 10 chr4 179088361 179088654 -23239693 + AluJo SINE Alu 1 290 -22 5145 203 79 34 chr4 179088654 179089244 -23239103 + L1M2 LINE L1 5274 5979 -1174 1997 140 14 0 chr4 179089244 179089530 -23238817 + AluSq SINE Alu 1 290 -23 5145 203 79 34 chr4 179089530 179089968 -23238379 + L1M2 LINE L1 5979 6396 -757 2093 157 13 7 chr4 179089960 179090515 -23237832 + L1MA9 LINE L1 5232 6306 -6 * 2093 164 21 21 chr4 179090515 179090944 -23237403 + L1MA9 LINE L1 5881 6312 0 37402 78 7 9 chr4 179091073 179097239 -23231108 + L1PA5 LINE L1 1 6149 -5 1750 232 14 12 chr4 179097369 179097800 -23230547 - MLT1C LTR MaLR -2 465 34 2005 121 18 66 chr4 179097899 179098280 -23230067 + THE1B LTR MaLR 2 364 0 10327 90 4 73 chr4 179098280 179099977 -23228370 + THE1B-int LTR MaLR 1 1580 0 2103 143 22 25 chr4 179099977 179100342 -23228005 + THE1B LTR MaLR 1 364 0 353 176 27 27 chr4 179100342 179100416 -23227931 + MIR3 SINE MIR 107 180 -28 431 351 39 42 chr4 179100796 179101129 -23227218 + L1MA4 LINE L1 1397 1728 -5768 1902 174 10 0 chr4 179101256 179101550 -23226797 + AluSx SINE Alu 1 297 -15 5721 234 45 32 chr4 179101806 179102096 -23226251 + L1MA4 LINE L1 2281 2566 -4999 2270 88 7 0 chr4 179102096 179102381 -23225966 - AluY SINE Alu -24 287 1 5721 234 45 32 chr4 179102381 179103478 -23224869 + L1MA4 LINE L1 2566 3647 -3918 2129 123 3 0 chr4 179103478 179103789 -23224558 + AluSp SINE Alu 1 312 0 5721 234 45 32 chr4 179103789 179105423 -23222924 + L1MA4 LINE L1 3647 5040 -2525 2062 179 25 37 chr4 179105423 179105858 -23222489 + MSTB1 LTR MaLR 1 430 -2 5721 234 45 32 chr4 179105858 179105963 -23222384 + L1MA4 LINE L1 5040 5142 -2423 5513 150 19 19 chr4 179105953 179106791 -23221556 + L1MA4 LINE L1 5951 6787 -932 * 324 0 0 0 chr4 179106791 179106827 -23221520 + (TG)n Simple_repeat Simple_repeat 2 37 0 1589 211 18 0 chr4 179106828 179107108 -23221239 - AluJb SINE Alu -27 285 1 5513 150 19 19 chr4 179107108 179108017 -23220330 + L1MA4 LINE L1 6786 7712 -7 530 67 11 22 chr4 179108143 179108233 -23220114 - L1MB8 LINE L1 -1 6177 6089 652 222 26 21 chr4 179108264 179108453 -23219894 - L1MB8 LINE L1 -78 6100 5911 1173 247 125 8 chr4 179108465 179108849 -23219498 - MLT2B1 LTR ERVL -91 429 1 636 197 94 0 chr4 179109577 179109694 -23218653 + FLAM_C SINE Alu 1 128 -5 1432 194 21 0 chr4 179110393 179110677 -23217670 + LTR10B LTR ERV1 258 547 0 424 278 170 29 chr4 179111810 179112260 -23216087 - MLT1H1 LTR MaLR -39 510 1 3682 119 25 9 chr4 179114538 179115093 -23213254 - LTR6A LTR ERV1 0 564 1 255 271 99 66 chr4 179115123 179115274 -23213073 - MIR3 SINE MIR -23 185 30 2218 114 125 5 chr4 179115393 179115769 -23212578 + MSTA LTR MaLR 8 428 0 2084 197 15 50 chr4 179115773 179116317 -23212030 - L1MB8 LINE L1 -82 6096 5572 2174 120 0 0 chr4 179117157 179117457 -23210890 - AluSg SINE Alu -10 300 1 473 48 0 0 chr4 179118012 179118074 -23210273 - L1PA6 LINE L1 -4 6150 6089 325 169 25 25 chr4 179118352 179118512 -23209835 + (TA)n Simple_repeat Simple_repeat 1 160 0 22 56 0 0 chr4 179118537 179118573 -23209774 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 179118765 179118786 -23209561 + AT_rich Low_complexity Low_complexity 1 21 0 216 281 96 74 chr4 179119317 179119452 -23208895 + MIR SINE MIR 2 139 -69 292 287 109 35 chr4 179119637 179119839 -23208508 + MLT1L LTR MaLR 162 378 -237 238 269 87 0 chr4 179119908 179120012 -23208335 + MLT1L LTR MaLR 492 604 -11 32 26 0 0 chr4 179120295 179120334 -23208013 + AT_rich Low_complexity Low_complexity 1 39 0 2030 90 72 0 chr4 179120916 179121195 -23207152 + AluY SINE Alu 1 299 -12 192 171 24 0 chr4 179121325 179121366 -23206981 - L2 LINE L2 -6 3307 3266 388 42 0 0 chr4 179121686 179121734 -23206613 + L1PA3 LINE L1 6105 6152 -3 283 293 60 9 chr4 179121974 179122090 -23206257 + Charlie4 DNA MER1_type 1815 1936 -25 5539 14 0 2 chr4 179122092 179122684 -23205663 + L1PA3 LINE L1 5563 6153 -2 2570 127 5 5 chr4 179123487 179123858 -23204489 - L1PA16 LINE L1 -2 6164 5794 1719 192 109 8 chr4 179123960 179124319 -23204028 - MSTD LTR MaLR -1 395 1 369 318 7 26 chr4 179124583 179124737 -23203610 + L2 LINE L2 2421 2571 -743 2199 116 14 0 chr4 179124893 179125185 -23203162 - AluSq SINE Alu -17 296 1 24 32 0 0 chr4 179126371 179126402 -23201945 + AT_rich Low_complexity Low_complexity 1 31 0 291 284 284 5 chr4 179126941 179127145 -23201202 - MIR SINE MIR 0 262 2 2317 105 0 3 chr4 179127228 179127532 -23200815 + AluSx SINE Alu 1 303 -9 375 284 52 36 chr4 179129426 179129620 -23198727 - MER117 DNA MER1_type 0 197 1 949 321 77 48 chr4 179130133 179130283 -23198064 - L2 LINE L2 -32 3281 3137 2463 86 0 0 chr4 179130283 179130586 -23197761 - AluSx SINE Alu -9 303 1 949 321 77 48 chr4 179130586 179131561 -23196786 - L2 LINE L2 -176 3137 2129 336 262 0 0 chr4 179131585 179131688 -23196659 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 934 101 8 0 chr4 179131689 179131808 -23196539 - FLAM_C SINE Alu -13 120 1 2137 100 21 3 chr4 179132876 179133167 -23195180 - AluY SINE Alu -11 300 5 1053 291 109 3 chr4 179133180 179133538 -23194809 + MLT1I LTR MaLR 10 405 -4 1445 99 18 32 chr4 179133576 179133797 -23194550 - L1PA16 LINE L1 -7 6159 5942 4127 153 42 13 chr4 179134736 179134770 -23193577 - L1MB4 LINE L1 -2 6178 6146 1153 246 94 7 chr4 179134770 179135046 -23193301 - AluJo SINE Alu -2 300 1 4127 153 42 13 chr4 179135046 179135757 -23192590 - L1MB4 LINE L1 -34 6146 5412 241 143 0 0 chr4 179135822 179135857 -23192490 - tRNA-His-CAC tRNA tRNA -39 36 2 4296 194 37 7 chr4 179135886 179136910 -23191437 - L1MB4 LINE L1 -743 5403 4372 1168 353 64 19 chr4 179136960 179137524 -23190823 - L3 LINE CR1 -3 1574 986 21 36 0 0 chr4 179137610 179137638 -23190709 + AT_rich Low_complexity Low_complexity 1 28 0 26 74 0 0 chr4 179137826 179137880 -23190467 + AT_rich Low_complexity Low_complexity 1 54 0 1113 209 41 27 chr4 179138123 179138343 -23190004 - MER58A DNA MER1_type -1 223 1 372 278 53 147 chr4 179138408 179138674 -23189673 - L2 LINE L2 -16 3256 3016 457 328 158 47 chr4 179138698 179139527 -23188820 - L2 LINE L2 -407 2907 1987 6317 185 54 30 chr4 179139528 179141133 -23187214 + L1MA4 LINE L1 1 1639 -4065 820 139 0 0 chr4 179141161 179141276 -23187071 - FLAM_C SINE Alu -27 116 2 325 0 0 0 chr4 179141292 179141327 -23187020 - U2 snRNA snRNA -153 35 1 3920 197 45 21 chr4 179141328 179142920 -23185427 + L1MA4 LINE L1 1629 3270 -3058 * 4392 133 32 11 chr4 179142915 179143699 -23184648 + L1MA4 LINE L1 5384 6200 -282 412 213 32 0 chr4 179143702 179143796 -23184551 + L1MB3 LINE L1 6087 6183 0 27 0 0 0 chr4 179143796 179143823 -23184524 + AT_rich Low_complexity Low_complexity 1 27 0 2702 133 33 26 chr4 179144474 179144903 -23183444 + Tigger2a DNA MER2_type 3 434 0 23 33 0 0 chr4 179145368 179145398 -23182949 + AT_rich Low_complexity Low_complexity 1 30 0 1456 174 60 8 chr4 179145602 179145867 -23182480 + AluJb SINE Alu 31 309 -3 216 246 62 0 chr4 179147614 179147679 -23180668 + L2 LINE L2 2980 3048 -224 1799 158 31 86 chr4 179148257 179148643 -23179704 + MLT1A1 LTR MaLR 1 365 0 25 56 0 42 chr4 179149559 179149631 -23178716 + GC_rich Low_complexity Low_complexity 1 69 0 209 214 0 0 chr4 179150433 179150475 -23177872 - L2 LINE L2 0 3272 3231 7627 137 138 30 chr4 179150614 179152150 -23176197 + pTR5 LTR ERV1 732 2433 -5 275 318 210 11 chr4 179152222 179152398 -23175949 + MIR SINE MIR 52 262 0 1768 126 0 60 chr4 179152723 179153025 -23175322 + AluSx SINE Alu 1 284 -28 1493 204 0 11 chr4 179153194 179153474 -23174873 - AluJo SINE Alu -35 277 1 194 245 0 0 chr4 179154041 179154090 -23174257 - L2 LINE L2 -4 3268 3220 201 74 0 0 chr4 179154245 179154272 -23174075 + (TCCCC)n Simple_repeat Simple_repeat 5 31 0 5208 124 46 10 chr4 179154281 179155109 -23173238 - Tigger4(Zombi) DNA MER2_type -4 2727 1870 624 144 0 0 chr4 179155107 179155197 -23173150 - Tigger4(Zombi) DNA MER2_type -2641 90 1 * 1653 199 90 38 chr4 179155539 179155962 -23172385 - MSTB2 LTR MaLR 0 457 13 345 314 83 48 chr4 179156518 179156686 -23171661 - L1MEd LINE L1 -4991 1128 947 1896 174 0 3 chr4 179156686 179156984 -23171363 - AluJb SINE Alu -15 297 1 345 314 83 48 chr4 179156984 179157067 -23171280 - L1MEd LINE L1 -5172 947 868 7422 99 36 89 chr4 179157386 179158671 -23169676 - THE1B-int LTR MaLR -364 1216 1 2596 122 14 3 chr4 179158671 179159031 -23169316 - THE1B LTR MaLR 0 364 1 542 263 58 17 chr4 179159120 179159360 -23168987 - MER96B DNA MER1_type? -166 251 2 771 134 8 0 chr4 179160149 179160268 -23168079 - Tigger1 DNA MER2_type -86 2332 2213 8251 209 45 7 chr4 179160271 179161841 -23166506 + L1M1 LINE L1 15 1643 -5922 11534 167 24 34 chr4 179161943 179164632 -23163715 + L1M1 LINE L1 3262 5930 -1635 2233 150 78 8 chr4 179164642 179165042 -23163305 - MSTA LTR MaLR 0 428 1 3155 117 7 8 chr4 179165042 179165869 -23162478 + MER50-int LTR ERV1 5733 7196 -9 443 163 35 0 chr4 179165869 179165955 -23162392 + MER50 LTR ERV1 1 89 -645 * 1412 115 5 5 chr4 179165951 179166159 -23162188 + MER50 LTR ERV1 504 711 -23 3678 176 7 3 chr4 179166160 179166780 -23161567 - Tigger1 DNA MER2_type -1789 629 8 32 0 0 0 chr4 179166958 179166990 -23161357 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 179167541 179167562 -23160785 + AT_rich Low_complexity Low_complexity 1 21 0 1728 162 7 30 chr4 179167582 179167878 -23160469 - AluJb SINE Alu -15 297 9 5345 179 87 65 chr4 179168191 179168289 -23160058 + LOR1-int LTR ERV1 2622 2716 -3986 1932 151 3 0 chr4 179168289 179168581 -23159766 - AluSx SINE Alu -19 293 1 5345 179 87 65 chr4 179168581 179168798 -23159549 + LOR1-int LTR ERV1 2716 2927 -3775 3057 79 31 0 chr4 179168798 179169189 -23159158 + L1PA10 LINE L1 5763 6165 -3 5345 179 87 65 chr4 179169189 179170985 -23157362 + LOR1-int LTR ERV1 2927 5174 -1528 678 151 24 32 chr4 179170992 179171105 -23157242 + LTR8A LTR ERV1 1 114 -613 2996 86 95 0 chr4 179171105 179171514 -23156833 + LTR7 LTR ERV1 1 448 -2 678 151 24 32 chr4 179171514 179171526 -23156821 + LTR8A LTR ERV1 114 125 -602 17796 102 50 27 chr4 179171526 179174672 -23153675 + HERVH LTR ERV1 11 3290 -4423 3390 116 4 8 chr4 179174662 179175173 -23153174 + HERVH LTR ERV1 3492 4000 -3713 * 4415 141 1 1 chr4 179175168 179175829 -23152518 + HERVH LTR ERV1 4489 5149 -2564 1362 124 23 14 chr4 179175830 179176048 -23152299 + HERVH LTR ERV1 5600 5819 -1894 * 2428 105 45 13 chr4 179176046 179176426 -23151921 + HERVH LTR ERV1 7322 7713 0 3035 81 95 0 chr4 179176426 179176835 -23151512 + LTR7 LTR ERV1 1 448 -2 2349 191 27 89 chr4 179176837 179177469 -23150878 + LTR8 LTR ERV1 99 691 0 8234 147 53 19 chr4 179177469 179179006 -23149341 + LTR49-int LTR ERV1 4742 6331 0 2066 204 77 31 chr4 179179006 179179551 -23148796 + LTR49 LTR ERV1 1 570 -25 2284 163 14 6 chr4 179179710 179180071 -23148276 + THE1B LTR MaLR 1 364 0 6855 112 14 1 chr4 179180072 179181030 -23147317 + THE1B-int LTR MaLR 2 971 -609 4184 64 2 0 chr4 179181030 179181544 -23146803 - HERVK14C LTR ERVK -1769 5648 5134 4622 104 48 153 chr4 179181544 179182467 -23145880 - LTR12 LTR ERV1 0 826 1 1005 229 31 45 chr4 179182546 179182838 -23145509 - pTR5 LTR ERV1 -1410 1028 741 * 40054 80 2 3 chr4 179182836 179187977 -23140370 - HERVK14C LTR ERVK -2280 5137 1 4998 65 3 0 chr4 179187977 179188562 -23139785 - LTR14C LTR ERVK 0 587 1 3855 183 9 11 chr4 179188562 179189212 -23139135 - L1PBb LINE L1 -5544 660 12 * 6047 230 43 32 chr4 179189184 179190807 -23137540 - L1PBa LINE L1 -5220 1643 3 885 292 31 0 chr4 179190829 179191089 -23137258 - PRIMA41-int LTR ERV1 -420 7336 7069 3211 236 75 29 chr4 179191107 179191995 -23136352 - HERVL32 LTR ERVL -2489 929 1 2337 152 98 7 chr4 179191995 179192415 -23135932 - LTR32 LTR ERVL 0 471 14 218 371 114 13 chr4 179192777 179193014 -23135333 + MIR SINE MIR 2 262 0 180 264 19 0 chr4 179193186 179193239 -23135108 + MIR3 SINE MIR 116 169 -39 619 318 89 36 chr4 179195138 179195497 -23132850 + L3 LINE CR1 448 825 -752 296 48 24 0 chr4 179195500 179195542 -23132805 + (TA)n Simple_repeat Simple_repeat 2 44 0 241 188 125 0 chr4 179195565 179195613 -23132734 + LTR54 LTR ERV1 33 86 -424 533 200 53 147 chr4 179195663 179195888 -23132459 + MER57A LTR ERV1 200 403 0 2138 103 3 7 chr4 179196515 179196827 -23131520 + AluSx SINE Alu 1 311 0 350 323 65 39 chr4 179197371 179197600 -23130747 + L3 LINE CR1 880 1114 -463 335 252 164 6 chr4 179197600 179197759 -23130588 - L1ME4a LINE L1 -3 6118 5935 454 315 173 27 chr4 179198011 179198376 -23129971 + L3 LINE CR1 1088 1505 -72 2713 52 9 3 chr4 179198411 179198760 -23129587 - L1PA5 LINE L1 0 6154 5820 2649 90 6 6 chr4 179198850 179199207 -23129140 - L1PB1 LINE L1 -3 6148 5792 2275 90 0 30 chr4 179199378 179199679 -23128668 - AluSq SINE Alu -18 295 4 189 107 0 0 chr4 179199971 179199999 -23128348 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 491 267 17 8 chr4 179200566 179200686 -23127661 + L2 LINE L2 3193 3313 0 5366 156 30 23 chr4 179201733 179201878 -23126469 - L1MA9 LINE L1 -2 7729 7587 306 0 0 0 chr4 179201878 179201912 -23126435 + (TG)n Simple_repeat Simple_repeat 1 34 0 5366 156 30 23 chr4 179201912 179202277 -23126070 - L1MA9 LINE L1 -144 7587 7226 273 57 0 0 chr4 179202277 179202312 -23126035 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 186 43 0 0 chr4 179202313 179202336 -23126011 + (TC)n Simple_repeat Simple_repeat 2 24 0 5366 156 30 23 chr4 179202336 179202982 -23125365 - L1MA9 LINE L1 -504 7227 6560 669 111 0 10 chr4 179202985 179203084 -23125263 + MER4A LTR ERV1 1 98 -566 1793 135 32 19 chr4 179203084 179203425 -23124922 + MER4A LTR ERV1 261 664 0 12582 218 58 30 chr4 179203428 179206710 -23121637 - L1MA9 LINE L1 -1008 6557 3122 1630 203 0 20 chr4 179206710 179207010 -23121337 - AluJo SINE Alu -18 294 1 12582 218 58 30 chr4 179207010 179208026 -23120321 - L1MA9 LINE L1 -4443 3122 2136 1877 137 9 22 chr4 179208026 179208376 -23119971 - MER4A LTR ERV1 0 664 261 531 143 20 20 chr4 179208376 179208474 -23119873 - MER4A LTR ERV1 -566 98 1 790 317 27 50 chr4 179208474 179208700 -23119647 - L1M2a LINE L1 -5124 2044 1814 3152 48 3 8 chr4 179208700 179209074 -23119273 - L1PA5 LINE L1 -2 6152 5781 790 317 27 50 chr4 179209074 179209370 -23118977 - L1M2a LINE L1 -5354 1814 1534 8684 32 7 2 chr4 179210236 179212003 -23116344 - L1PA3 LINE L1 -3 6152 4381 24 53 0 0 chr4 179212077 179212115 -23116232 + AT_rich Low_complexity Low_complexity 1 38 0 230 269 164 8 chr4 179212529 179212663 -23115684 - L1ME4a LINE L1 -1 6120 5966 1246 55 0 0 chr4 179212677 179212823 -23115524 - L1MA1 LINE L1 0 6302 6157 6170 161 19 2 chr4 179212975 179214824 -23113523 - L1PB1 LINE L1 -2 6865 4983 2808 172 89 0 chr4 179214805 179215335 -23113012 - L1PB1 LINE L1 -6286 577 1 * 460 306 27 31 chr4 179215347 179215569 -23112778 - L1ME4a LINE L1 -239 5882 5662 350 203 141 39 chr4 179215666 179215794 -23112553 - L1MC5 LINE L1 -184 7777 7637 433 299 7 7 chr4 179216298 179216445 -23111902 - L1ME LINE L1 -374 5747 5601 197 315 63 27 chr4 179217024 179217135 -23111212 + L2 LINE L2 2596 2710 -604 319 226 38 85 chr4 179217701 179217807 -23110540 - MIR SINE MIR -2 260 160 431 316 32 43 chr4 179218665 179218852 -23109495 + MIR SINE MIR 7 191 -71 2125 122 0 3 chr4 179218967 179219263 -23109084 - AluSq SINE Alu -18 295 1 2131 125 0 0 chr4 179219273 179219576 -23108771 - AluSc SINE Alu -6 303 1 1968 109 4 0 chr4 179219648 179219915 -23108432 - AluSc SINE Alu -6 303 36 30 27 0 0 chr4 179220156 179220193 -23108154 + AT_rich Low_complexity Low_complexity 1 37 0 9698 59 20 89 chr4 179220324 179221812 -23106535 - SVA Other Other -1 1385 1 1692 191 77 11 chr4 179223008 179223359 -23104988 - MLT1A2 LTR MaLR 0 374 1 214 258 133 42 chr4 179225729 179225849 -23102498 - L2 LINE L2 -214 3058 2928 306 106 0 0 chr4 179226114 179226161 -23102186 + (TG)n Simple_repeat Simple_repeat 1 47 0 2113 125 10 54 chr4 179226249 179226469 -23101878 - THE1C LTR MaLR 0 375 177 2044 128 0 0 chr4 179226469 179226794 -23101553 + AluSc SINE Alu 1 325 0 2113 125 10 54 chr4 179226794 179226964 -23101383 - THE1C LTR MaLR -198 177 1 8939 200 54 17 chr4 179227153 179227863 -23100484 - L1MA10 LINE L1 -2 6568 5886 2395 58 10 16 chr4 179227863 179228175 -23100172 - AluY SINE Alu -1 310 1 8939 200 54 17 chr4 179228175 179230735 -23097612 - L1MA10 LINE L1 -684 5886 3179 2347 104 125 8 chr4 179230741 179231124 -23097223 + MSTA LTR MaLR 1 428 0 3704 193 238 18 chr4 179231126 179232135 -23096212 + MSTA-int LTR MaLR 3 1233 -347 2158 264 63 26 chr4 179232137 179234381 -23093966 - L1MA10 LINE L1 -3369 3013 848 956 309 32 40 chr4 179234441 179234845 -23093502 - L1MA10 LINE L1 -5739 574 174 282 29 0 0 chr4 179234944 179234979 -23093368 + (CA)n Simple_repeat Simple_repeat 2 36 0 1676 202 25 8 chr4 179234995 179235155 -23093192 - MLT2D LTR ERVL -51 363 207 2180 121 0 19 chr4 179235155 179235469 -23092878 - AluSx SINE Alu -4 308 1 1676 202 25 8 chr4 179235469 179235665 -23092682 - MLT2D LTR ERVL -207 207 1 193 379 87 6 chr4 179235831 179235992 -23092355 - L2 LINE L2 -437 2877 2704 183 263 0 0 chr4 179237430 179237468 -23090879 - L2 LINE L2 -6 3266 3229 312 281 62 31 chr4 179237574 179237734 -23090613 - MIR SINE MIR -41 221 57 192 77 0 0 chr4 179238361 179238387 -23089960 + (TG)n Simple_repeat Simple_repeat 2 27 0 2421 187 14 10 chr4 179238690 179239209 -23089138 - L1MA7 LINE L1 -13 6514 5994 4989 160 50 4 chr4 179239211 179240526 -23087821 - L1MA7 LINE L1 -635 5913 4535 2444 244 95 35 chr4 179240511 179240871 -23087476 - L1MA7 LINE L1 -3652 2730 2393 * 1786 167 27 6 chr4 179240871 179241207 -23087140 + MER2 DNA MER2_type 2 344 0 2444 244 95 35 chr4 179241207 179242699 -23085648 - L1MA7 LINE L1 -3989 2393 911 534 344 35 40 chr4 179244116 179244206 -23084141 - L1MA7 LINE L1 -5710 603 514 1692 192 17 17 chr4 179244206 179244503 -23083844 - AluJo SINE Alu -15 297 1 534 344 35 40 chr4 179244503 179244840 -23083507 - L1MA7 LINE L1 -5799 514 178 2033 92 41 10 chr4 179244867 179245181 -23083166 - LTR17 LTR ERV1 -456 324 1 2197 65 3 3 chr4 179245181 179245473 -23082874 - HERV17 LTR ERV1 0 8626 8335 304 26 0 0 chr4 179245463 179245502 -23082845 - HERV17 LTR ERV1 -1078 7548 7510 * 1166 68 6 0 chr4 179245498 179245659 -23082688 - HERV17 LTR ERV1 -1479 7147 6986 * 16558 50 6 1 chr4 179245651 179247751 -23080596 - HERV17 LTR ERV1 -2724 5902 3791 1293 257 50 5 chr4 179247898 179248299 -23080048 + L2 LINE L2 2485 2903 -411 317 261 0 0 chr4 179248299 179248368 -23079979 + L2 LINE L2 3244 3312 -1 2254 120 0 0 chr4 179248494 179248803 -23079544 - AluSc SINE Alu 0 309 1 201 340 62 0 chr4 179249096 179249193 -23079154 - L3 LINE CR1 -146 1431 1329 273 351 127 40 chr4 179250754 179251252 -23077095 - L2 LINE L2 -566 2748 2208 224 183 256 37 chr4 179251279 179251361 -23076986 + L2 LINE L2 3209 3308 -5 740 161 98 7 chr4 179253249 179253392 -23074955 - FRAM SINE Alu -21 155 1 435 196 0 65 chr4 179255008 179255100 -23073247 + MER58 DNA MER1_type 1 86 -129 * 1771 124 62 3 chr4 179255098 179255405 -23072942 - Tigger2 DNA MER2_type -114 2604 2280 372 191 0 0 chr4 179255404 179255472 -23072875 - Tigger2 DNA MER2_type -2649 69 2 * 265 240 52 94 chr4 179255924 179256020 -23072327 - MIR SINE MIR -83 125 34 23 0 0 0 chr4 179256808 179256831 -23071516 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr4 179257230 179257259 -23071088 + AT_rich Low_complexity Low_complexity 1 29 0 318 50 0 0 chr4 179257801 179257841 -23070506 + (TG)n Simple_repeat Simple_repeat 1 40 0 1974 199 104 17 chr4 179257855 179258318 -23070029 + MLT1D LTR MaLR 1 503 -2 469 184 25 148 chr4 179258328 179258572 -23069775 - Charlie4 DNA MER1_type -32 1929 1716 970 209 74 4 chr4 179258905 179259163 -23069184 - Charlie4 DNA MER1_type -1680 281 6 1742 186 26 6 chr4 179259570 179259919 -23068428 + MLT1A1 LTR MaLR 4 359 -6 1771 159 54 6 chr4 179261429 179261763 -23066584 + MSTB LTR MaLR 1 350 -76 23 0 0 0 chr4 179261763 179261786 -23066561 + AT_rich Low_complexity Low_complexity 1 23 0 231 160 0 0 chr4 179261896 179261946 -23066401 - Alu SINE Alu 0 308 259 648 11 0 33 chr4 179261952 179262044 -23066303 + (TTTTA)n Simple_repeat Simple_repeat 4 92 0 8887 24 0 0 chr4 179262044 179263846 -23064501 - L1PA3 LINE L1 -16 6139 4338 1654 25 0 0 chr4 179263846 179264047 -23064300 + L1PA3 LINE L1 4138 4338 -1808 385 166 2 27 chr4 179264047 179264132 -23064215 + MSTB1 LTR MaLR 313 419 0 242 300 20 40 chr4 179264516 179264616 -23063731 - MIR SINE MIR -6 256 159 289 335 77 22 chr4 179264680 179264862 -23063485 + MIR SINE MIR 61 252 -10 318 347 17 17 chr4 179265880 179266056 -23062291 - MER5A DNA MER1_type 0 189 14 1313 105 5 0 chr4 179266652 179266843 -23061504 - L1PA14 LINE L1 -14 6147 5956 622 241 118 5 chr4 179266927 179267130 -23061217 - MLT2E LTR ERVL 0 628 403 24976 65 10 4 chr4 179269045 179272526 -23055821 - L1P LINE L1 -2632 3514 13 202 191 21 0 chr4 179273303 179273350 -23054997 - L2 LINE L2 0 3313 3266 3007 139 67 14 chr4 179273783 179274302 -23054045 + LTR10A LTR ERV1 1 547 -62 241 307 114 7 chr4 179275967 179276107 -23052240 + L2 LINE L2 3156 3310 -3 280 196 0 0 chr4 179276389 179276440 -23051907 + U5 snRNA snRNA 1 51 -65 182 114 0 23 chr4 179276440 179276484 -23051863 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 334 274 117 65 chr4 179277205 179277556 -23050791 - HAL1b LINE L1 -908 440 72 292 263 112 13 chr4 179278456 179278608 -23049739 + MER46C DNA MER2_type 127 293 -45 22 35 0 0 chr4 179279439 179279468 -23048879 + AT_rich Low_complexity Low_complexity 1 29 0 1772 136 38 11 chr4 179279852 179280139 -23048208 + AluSx SINE Alu 1 295 -17 30 45 0 0 chr4 179280484 179280528 -23047819 + AT_rich Low_complexity Low_complexity 1 44 0 246 277 277 9 chr4 179280734 179280846 -23047501 - MIR SINE MIR -51 211 70 1951 114 6 49 chr4 179281235 179281560 -23046787 - AluSx SINE Alu -1 311 1 999 238 123 137 chr4 179281567 179282282 -23046065 + L2 LINE L2 1329 2033 -1281 378 291 46 51 chr4 179282446 179282683 -23045664 - L1ME3A LINE L1 -223 5947 5712 815 249 23 0 chr4 179283239 179283412 -23044935 - MER45A DNA AcHobo 0 178 2 261 0 0 0 chr4 179283566 179283595 -23044752 + (T)n Simple_repeat Simple_repeat 1 29 0 2144 71 34 0 chr4 179283751 179284018 -23044329 - AluY SINE Alu -13 298 23 2503 124 26 64 chr4 179284018 179284517 -23043830 + LTR19A LTR ERV1 7 486 0 29 28 0 0 chr4 179284799 179284835 -23043512 + AT_rich Low_complexity Low_complexity 1 36 0 418 94 82 12 chr4 179284844 179284929 -23043418 - MER53 DNA DNA -12 177 87 2228 107 0 3 chr4 179284986 179285285 -23043062 + AluY SINE Alu 3 300 -11 391 115 0 0 chr4 179285290 179285351 -23042996 + MER53 DNA DNA 129 189 0 1050 98 0 0 chr4 179285533 179285666 -23042681 - AluSq/x SINE Alu -180 133 1 216 0 0 0 chr4 179286777 179286801 -23041546 + (TG)n Simple_repeat Simple_repeat 1 24 0 1589 158 8 4 chr4 179289893 179290140 -23038207 - AluJo SINE Alu -26 286 39 2304 67 11 3 chr4 179290432 179290744 -23037603 + AluSp SINE Alu 2 315 0 435 184 80 72 chr4 179291743 179291868 -23036479 + MER106B DNA MER1_type 26 151 -908 22 0 0 0 chr4 179291883 179291905 -23036442 + AT_rich Low_complexity Low_complexity 1 22 0 406 276 199 59 chr4 179292031 179292353 -23035994 - MLT1J LTR MaLR -144 367 1 22 0 0 0 chr4 179292920 179292942 -23035405 + AT_rich Low_complexity Low_complexity 1 22 0 1637 206 37 23 chr4 179293043 179293392 -23034955 - MLT1A1 LTR MaLR -2 363 10 584 332 66 19 chr4 179293522 179293899 -23034448 + LTR16C LTR ERVL 90 484 -7 312 174 14 14 chr4 179295409 179295478 -23032869 - L1MB8 LINE L1 -2 6176 6108 * 4288 144 31 67 chr4 179295460 179296388 -23031959 + L1PB4 LINE L1 5275 6303 0 691 276 9 18 chr4 179296385 179296613 -23031734 - L1MB8 LINE L1 -54 6124 5899 * 1585 191 93 5 chr4 179296650 179297028 -23031319 - L1MB5 LINE L1 -233 5941 5531 729 125 0 27 chr4 179298136 179298248 -23030099 + AluSg/x SINE Alu 187 295 -17 1977 354 64 20 chr4 179298282 179299555 -23028792 + ERVL LTR ERVL 2677 4005 -1759 4607 127 12 28 chr4 179300124 179300879 -23027468 + L1MA3 LINE L1 1752 2494 -5071 * 14140 163 20 13 chr4 179300877 179304724 -23023623 + L1MA3 LINE L1 3846 7724 0 620 354 12 29 chr4 179305257 179305497 -23022850 + MIR SINE MIR 15 250 -12 236 300 10 40 chr4 179307262 179307362 -23020985 - MIR3 SINE MIR -9 199 103 557 286 130 38 chr4 179307564 179307770 -23020577 + L2 LINE L2 2586 2822 -492 2184 158 18 23 chr4 179307770 179308162 -23020185 + MLT1B LTR MaLR 1 390 0 557 286 130 38 chr4 179308162 179308217 -23020130 + L2 LINE L2 2822 2871 -443 363 305 0 66 chr4 179308292 179308443 -23019904 + L2 LINE L2 2930 3070 -243 254 362 71 0 chr4 179308982 179309123 -23019224 + MIR SINE MIR 106 256 -6 1682 231 15 50 chr4 179311689 179312166 -23016181 + MER31B LTR ERV1 7 466 0 583 236 16 0 chr4 179312277 179312404 -23015943 + MER31B-int LTR ERV1 45 173 -4763 2077 129 10 3 chr4 179312440 179312743 -23015604 - AluSq SINE Alu 0 313 9 2042 165 36 14 chr4 179312743 179313107 -23015240 + MSTB LTR MaLR 55 426 0 2686 160 4 8 chr4 179313139 179313607 -23014740 + L1PA16 LINE L1 5695 6160 -6 323 88 0 35 chr4 179313607 179313659 -23014688 + L1MA10 LINE L1 6279 6333 -1 425 120 53 0 chr4 179313837 179313912 -23014435 + MER31B-int LTR ERV1 3095 3173 -1763 * 756 184 76 27 chr4 179313911 179314096 -23014251 + MER31B-int LTR ERV1 3381 3574 -1362 1238 235 32 6 chr4 179314370 179314685 -23013662 - MER67D LTR ERV1 0 514 192 2128 59 92 0 chr4 179314719 179314991 -23013356 + AluY SINE Alu 1 297 -14 680 173 56 33 chr4 179314996 179315215 -23013132 - MER67D LTR ERV1 -359 155 1 15545 63 11 3 chr4 179315719 179318186 -23010161 + L1P2 LINE L1 3293 5775 -379 17695 56 1 2 chr4 179318292 179320444 -23007903 - HERV17 LTR ERV1 -4046 4580 2430 7117 64 12 22 chr4 179320429 179321401 -23006946 - HERV17 LTR ERV1 -6612 2014 1052 * 5126 203 52 73 chr4 179321505 179322902 -23005445 + MER31B-int LTR ERV1 3550 4916 -20 1850 192 12 69 chr4 179322902 179323396 -23004951 + MER31B LTR ERV1 1 466 0 288 79 0 0 chr4 179323620 179323658 -23004689 + MER31-int LTR ERV1 4873 4910 -3210 21 36 0 0 chr4 179324643 179324671 -23003676 + AT_rich Low_complexity Low_complexity 1 28 0 24804 40 1 9 chr4 179324820 179328735 -22999612 - L1PA4 LINE L1 -4 6151 2266 187 338 13 52 chr4 179328998 179329075 -22999272 - L2 LINE L2 -2 3311 3238 789 262 42 5 chr4 179329535 179329726 -22998621 + MER119 DNA MER1_type 36 233 -350 25 51 0 0 chr4 179330411 179330450 -22997897 + AT_rich Low_complexity Low_complexity 1 39 0 21 57 0 0 chr4 179330564 179330599 -22997748 + AT_rich Low_complexity Low_complexity 1 35 0 224 288 62 34 chr4 179331104 179331250 -22997097 + MIR SINE MIR 11 160 -102 13785 123 19 16 chr4 179331395 179333648 -22994699 + L1P LINE L1 11 2271 -3875 883 368 88 24 chr4 179334577 179334898 -22993449 + L3 LINE CR1 334 633 -944 1865 172 0 7 chr4 179334898 179335201 -22993146 + AluJb SINE Alu 1 301 -11 883 368 88 24 chr4 179335201 179335716 -22992631 + L3 LINE CR1 633 1224 -353 1530 182 44 14 chr4 179335831 179336128 -22992219 + AluJo SINE Alu 1 306 -6 2092 100 0 42 chr4 179336184 179336493 -22991854 + AluY SINE Alu 1 296 -15 576 114 0 0 chr4 179336952 179337040 -22991307 - L1MA10 LINE L1 -234 5934 5847 * 1631 168 30 80 chr4 179337038 179337478 -22990869 + L1MA10 LINE L1 5914 6331 -3 21 36 0 0 chr4 179339009 179339037 -22989310 + AT_rich Low_complexity Low_complexity 1 28 0 1089 106 0 17 chr4 179339238 179339418 -22988929 + L1MA7 LINE L1 5731 5907 -384 2110 114 47 0 chr4 179339419 179339718 -22988629 + AluSq SINE Alu 1 313 0 1489 102 0 5 chr4 179339871 179340086 -22988261 + L1PA6 LINE L1 5941 6154 0 1293 291 72 70 chr4 179340201 179341203 -22987144 + L2 LINE L2 2298 3312 -1 2238 126 33 8 chr4 179341210 179341576 -22986771 - THE1C LTR MaLR 0 375 1 328 297 117 0 chr4 179341892 179342003 -22986344 + MIR SINE MIR 1 124 -138 3678 155 12 15 chr4 179342198 179342880 -22985467 - L1MA8 LINE L1 -2 6289 5610 327 280 37 19 chr4 179342897 179343004 -22985343 + MIR SINE MIR 145 253 -9 22 35 0 0 chr4 179343537 179343566 -22984781 + AT_rich Low_complexity Low_complexity 1 29 0 387 331 11 34 chr4 179343817 179343995 -22984352 + L1ME3A LINE L1 5992 6165 -5 23 0 0 0 chr4 179345027 179345050 -22983297 + AT_rich Low_complexity Low_complexity 1 23 0 217 206 15 15 chr4 179345057 179345125 -22983222 + GA-rich Low_complexity Low_complexity 3 70 0 22 0 0 0 chr4 179345374 179345396 -22982951 + AT_rich Low_complexity Low_complexity 1 22 0 342 268 72 33 chr4 179345820 179345973 -22982374 + L3 LINE CR1 1335 1493 -84 21 57 0 0 chr4 179346256 179346291 -22982056 + AT_rich Low_complexity Low_complexity 1 35 0 186 133 0 0 chr4 179346353 179346383 -22981964 + (TA)n Simple_repeat Simple_repeat 2 31 0 212 330 55 92 chr4 179346659 179346932 -22981415 - L2 LINE L2 -56 3216 2954 303 177 25 0 chr4 179347668 179347747 -22980600 - L1MA5 LINE L1 0 6300 6220 1082 199 0 0 chr4 179347855 179348046 -22980301 + AluJb SINE Alu 116 306 -6 904 125 56 12 chr4 179348226 179348386 -22979961 - THE1C LTR MaLR -208 167 1 303 101 14 14 chr4 179349059 179349128 -22979219 + L1MA7 LINE L1 6218 6286 -5 3012 123 65 14 chr4 179349814 179350334 -22978013 + LTR10A LTR ERV1 1 547 -62 454 252 150 0 chr4 179350968 179351115 -22977232 - MIR SINE MIR -12 250 82 23 33 0 0 chr4 179351116 179351146 -22977201 + AT_rich Low_complexity Low_complexity 1 30 0 4894 112 19 17 chr4 179351147 179351598 -22976749 - L1PB4 LINE L1 -14 6142 5687 2105 82 71 7 chr4 179351598 179351880 -22976467 - AluSc SINE Alu -9 300 1 4894 112 19 17 chr4 179351880 179352248 -22976099 - L1PB4 LINE L1 -469 5687 5321 3501 124 23 8 chr4 179352255 179352772 -22975575 + MER1A DNA MER1_type 3 527 0 259 316 259 0 chr4 179352833 179352972 -22975375 - MER5B DNA MER1_type -1 177 3 22 0 0 0 chr4 179353299 179353321 -22975026 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 179354414 179354435 -22973912 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr4 179355095 179355127 -22973220 + AT_rich Low_complexity Low_complexity 1 32 0 1498 205 33 49 chr4 179355302 179355467 -22972880 + MER67C LTR ERV1 3 169 -345 2352 86 0 3 chr4 179355467 179355769 -22972578 + AluY SINE Alu 1 301 -10 1498 205 33 49 chr4 179355769 179356130 -22972217 + MER67C LTR ERV1 169 505 -9 356 210 5 88 chr4 179356163 179356349 -22971998 - L1MB8 LINE L1 -1 6177 6000 333 0 0 0 chr4 179356716 179356753 -22971594 + (TG)n Simple_repeat Simple_repeat 1 37 0 216 0 0 0 chr4 179356752 179356776 -22971571 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 253 188 0 14 chr4 179356998 179357067 -22971280 - L1MA8 LINE L1 -8 6283 6216 * 652 168 9 18 chr4 179357057 179357206 -22971141 - L1MA8 LINE L1 -27 6273 6113 4152 73 34 2 chr4 179357433 179357992 -22970355 - LTR19B LTR ERV1 -3 577 1 368 337 73 75 chr4 179358107 179358597 -22969750 + L1MEd LINE L1 68 556 -5563 420 307 12 67 chr4 179358716 179358970 -22969377 + L1MEd LINE L1 596 835 -5284 759 215 79 56 chr4 179360485 179360699 -22967648 - MER20 DNA MER1_type 0 219 1 604 296 84 0 chr4 179361010 179361213 -22967134 + MIR SINE MIR 17 236 -26 2101 182 44 25 chr4 179361623 179362100 -22966247 - MER66B LTR ERV1 0 486 1 456 110 82 0 chr4 179362114 179362187 -22966160 - MADE1 DNA Mariner 0 80 2 1596 178 36 0 chr4 179362953 179363234 -22965113 - AluJb SINE Alu -5 307 17 2318 104 0 0 chr4 179364412 179364710 -22963637 + AluSx SINE Alu 1 298 -14 6944 65 0 0 chr4 179365095 179366245 -22962102 - L1PA5 LINE L1 0 6154 5002 * 7769 20 2 0 chr4 179366242 179367441 -22960906 - L1PA3 LINE L1 -2 6153 4954 12247 26 0 3 chr4 179367443 179369060 -22959287 + L1P1 LINE L1 3875 5487 -668 10884 65 4 4 chr4 179369168 179370700 -22957647 - L1PA3 LINE L1 -1577 4569 3038 * 34578 78 17 8 chr4 179370684 179375649 -22952698 - L1PA5 LINE L1 -1129 5017 11 21 36 0 0 chr4 179377183 179377211 -22951136 + AT_rich Low_complexity Low_complexity 1 28 0 2219 106 0 3 chr4 179377837 179378120 -22950227 - AluSg SINE Alu -28 282 1 2595 199 28 29 chr4 179378727 179379346 -22949001 - L1MB8 LINE L1 -1 6177 5560 270 329 73 22 chr4 179380866 179381003 -22947344 + MIR SINE MIR 21 164 -98 919 193 0 73 chr4 179381118 179381351 -22946996 + MER20 DNA MER1_type 1 216 -3 375 278 60 18 chr4 179381613 179381773 -22946574 + MIR SINE MIR 7 164 -66 2089 127 3 3 chr4 179381787 179382087 -22946260 - AluSx SINE Alu -1 311 12 2081 122 17 3 chr4 179382935 179383230 -22945117 + AluSp SINE Alu 2 300 -13 940 205 12 0 chr4 179383636 179383807 -22944540 - FAM SINE Alu -2 173 1 183 100 0 0 chr4 179384562 179384592 -22943755 + (GTATG)n Simple_repeat Simple_repeat 3 32 0 492 363 101 9 chr4 179384749 179384815 -22943532 + L1M2 LINE L1 10 69 -6780 1920 111 83 46 chr4 179384815 179385166 -22943181 + THE1B LTR MaLR 1 364 0 492 363 101 9 chr4 179385166 179385526 -22942821 + L1M2 LINE L1 69 475 -6374 331 322 51 45 chr4 179385708 179385885 -22942462 + L1M2 LINE L1 779 956 -5893 485 351 47 66 chr4 179386335 179386654 -22941693 + L1M2 LINE L1 796 1108 -5741 416 227 0 0 chr4 179386680 179386768 -22941579 + L1PA15-16 LINE L1 1472 1559 -5290 * 12319 220 29 17 chr4 179386758 179391295 -22937052 + L1P5 LINE L1 1336 6033 -826 1589 162 23 36 chr4 179391295 179391597 -22936750 + AluJb SINE Alu 1 298 -14 12319 220 29 17 chr4 179391597 179391747 -22936600 + L1P5 LINE L1 6033 6180 -679 5608 126 15 52 chr4 179391758 179392883 -22935464 - L1PA13 LINE L1 -7 6156 5044 2374 77 3 10 chr4 179392883 179393196 -22935151 - AluY SINE Alu 0 311 1 5608 126 15 52 chr4 179393196 179393226 -22935121 - L1PA13 LINE L1 -1119 5044 5014 8730 169 13 34 chr4 179393227 179394263 -22934084 - L1 LINE L1 -2354 5211 4154 2068 88 3 42 chr4 179394263 179394548 -22933799 - AluY SINE Alu -26 285 12 8730 169 13 34 chr4 179394548 179396800 -22931547 - L1 LINE L1 -3411 4154 1987 2344 202 21 6 chr4 179396796 179397277 -22931070 - L1 LINE L1 -5973 1592 1105 * 525 202 40 8 chr4 179397273 179397397 -22930950 - L1 LINE L1 -7430 135 8 * 26 0 0 0 chr4 179397873 179397899 -22930448 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr4 179398187 179398217 -22930130 + AT_rich Low_complexity Low_complexity 1 30 0 1818 171 8 52 chr4 179400406 179400701 -22927646 - MLT1C LTR MaLR 0 467 191 2255 81 7 0 chr4 179400701 179400984 -22927363 - AluY SINE Alu -26 285 1 1818 171 8 52 chr4 179400984 179401075 -22927272 - MLT1C LTR MaLR -276 191 98 1306 302 55 27 chr4 179401179 179401728 -22926619 - L2 LINE L2 -406 2908 2345 1858 146 19 33 chr4 179403867 179404230 -22924117 - MER46B DNA MER2_type -1 235 3 28 61 0 0 chr4 179404374 179404423 -22923924 + AT_rich Low_complexity Low_complexity 1 49 0 852 257 96 5 chr4 179407845 179408063 -22920284 + MIR SINE MIR 1 238 -24 183 100 0 0 chr4 179408478 179408508 -22919839 + (CA)n Simple_repeat Simple_repeat 2 31 0 834 245 20 5 chr4 179409683 179409883 -22918464 - MER20 DNA MER1_type -16 203 1 343 270 70 0 chr4 179410164 179410279 -22918068 - L3b LINE CR1 -354 1229 1107 21 0 0 0 chr4 179410532 179410553 -22917794 + AT_rich Low_complexity Low_complexity 1 21 0 287 157 14 0 chr4 179412118 179412188 -22916159 + GA-rich Low_complexity Low_complexity 2 72 0 347 352 40 55 chr4 179412314 179412715 -22915632 + L2 LINE L2 2383 2777 -537 667 135 126 2 chr4 179413071 179413294 -22915053 + AluSx SINE Alu 12 298 -14 210 192 14 110 chr4 179413328 179413401 -22914946 - L2 LINE L2 0 3272 3207 352 233 47 47 chr4 179413557 179413686 -22914661 - MIR SINE MIR -10 252 124 5965 207 2 15 chr4 179413702 179413764 -22914583 - L1 LINE L1 -793 5353 5292 2393 91 10 0 chr4 179413764 179414071 -22914276 - AluSp SINE Alu -1 312 3 5965 207 2 15 chr4 179414071 179415450 -22912897 - L1 LINE L1 -854 5292 3930 3925 122 27 3 chr4 179415447 179415877 -22912470 + L1PB1 LINE L1 5346 5799 -352 * 534 103 0 0 chr4 179415877 179415955 -22912392 + (TA)n Simple_repeat Simple_repeat 2 79 0 3925 122 27 3 chr4 179415955 179416181 -22912166 + L1PB1 LINE L1 5799 6018 -133 398 171 51 63 chr4 179416222 179416380 -22911967 + HsTC2 DNA Tc2 1641 1796 -102 198 302 62 10 chr4 179416382 179416478 -22911869 - MIR SINE MIR -157 105 5 803 194 71 155 chr4 179416748 179417155 -22911192 + MLT1A2 LTR MaLR 2 374 0 543 158 31 153 chr4 179417297 179417493 -22910854 - MER20 DNA MER1_type 0 219 48 879 134 0 0 chr4 179418275 179418417 -22909930 + (TA)n Simple_repeat Simple_repeat 1 142 0 2088 179 66 0 chr4 179418916 179419340 -22909007 + MER6A DNA MER2_type 1 452 -153 723 249 27 44 chr4 179419345 179419570 -22908777 + LTR51 LTR ERV1 297 517 -154 893 118 39 0 chr4 179419733 179419886 -22908461 + MER6A DNA MER2_type 447 605 0 261 388 28 14 chr4 179420471 179420685 -22907662 + L2 LINE L2 2613 2829 -485 278 267 0 67 chr4 179421436 179421556 -22906791 - MER102a DNA MER1_type -15 315 204 17408 42 2 1 chr4 179421599 179424517 -22903830 - L1PA4 LINE L1 -5 6150 3223 240 279 44 0 chr4 179424541 179424609 -22903738 - MER102a DNA MER1_type -142 188 118 1249 62 0 0 chr4 179424609 179424771 -22903576 - L1PA4 LINE L1 0 6155 5994 225 191 21 0 chr4 179425001 179425048 -22903299 + (TG)n Simple_repeat Simple_repeat 2 49 0 415 266 42 23 chr4 179425048 179425310 -22903037 - L1ME LINE L1 -714 6247 5983 2709 163 41 69 chr4 179425322 179425974 -22902373 - MER4D LTR ERV1 -32 871 238 1397 159 21 25 chr4 179426040 179426323 -22902024 - MER49 LTR ERV1 -641 282 1 1224 197 134 22 chr4 179426981 179427250 -22901097 - AluJo SINE Alu -3 299 1 2106 125 3 3 chr4 179427507 179427796 -22900551 - AluSx SINE Alu -23 289 1 1437 251 93 9 chr4 179427799 179428467 -22899880 - L1ME LINE L1 -1398 5543 4820 1166 258 138 38 chr4 179428472 179428605 -22899742 + MER97c DNA MER1_type? 17 135 -955 1518 222 34 16 chr4 179428605 179428988 -22899359 + MLT1B LTR MaLR 1 390 0 1166 258 138 38 chr4 179428988 179429385 -22898962 + MER97c DNA MER1_type? 135 600 -490 686 300 100 30 chr4 179429573 179430502 -22897845 - L1MCc LINE L1 -4754 2368 1162 1810 129 81 0 chr4 179430827 179431099 -22897248 + AluSg SINE Alu 1 294 -16 225 0 0 0 chr4 179431111 179431136 -22897211 + (TG)n Simple_repeat Simple_repeat 2 26 0 345 24 0 0 chr4 179431152 179431194 -22897153 + (TC)n Simple_repeat Simple_repeat 2 43 0 279 0 0 0 chr4 179431193 179431224 -22897123 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 248 211 0 0 chr4 179431246 179431303 -22897044 - L1MCc LINE L1 -6341 82 26 1986 128 62 106 chr4 179431516 179431969 -22896378 - Tigger2a DNA MER2_type 0 434 2 22 80 0 0 chr4 179432141 179432191 -22896156 + AT_rich Low_complexity Low_complexity 1 50 0 1206 296 111 29 chr4 179433308 179433856 -22894491 + MLT1E LTR MaLR 1 593 0 302 282 77 26 chr4 179434100 179434217 -22894130 - MIR SINE MIR -27 235 113 21 0 0 0 chr4 179434650 179434671 -22893676 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 179434977 179435005 -22893342 + AT_rich Low_complexity Low_complexity 1 28 0 3153 310 81 4 chr4 179436214 179437339 -22891008 + L2 LINE L2 377 1587 -1727 544 261 62 78 chr4 179437391 179437648 -22890699 + L2 LINE L2 3060 3312 -1 453 190 0 0 chr4 179437855 179437934 -22890413 - AluS SINE Alu -222 91 13 9187 129 30 1 chr4 179438479 179440748 -22887599 + L1PA10 LINE L1 3864 6152 -16 2359 154 36 16 chr4 179440816 179441257 -22887090 - L1PA16 LINE L1 -8 6158 5709 390 173 0 0 chr4 179443331 179443406 -22884941 + GA-rich Low_complexity Low_complexity 3 77 0 394 129 0 16 chr4 179443408 179443470 -22884877 + (GAGAA)n Simple_repeat Simple_repeat 5 65 0 317 299 143 20 chr4 179443922 179444069 -22884278 - L3 LINE CR1 -586 991 827 335 230 51 88 chr4 179445103 179445320 -22883027 - HAL1 LINE L1 -58 2449 2241 406 308 72 65 chr4 179445683 179445812 -22882535 - HAL1 LINE L1 -1411 1096 969 2488 68 0 7 chr4 179445812 179446122 -22882225 - AluSc SINE Alu -1 308 1 406 308 72 65 chr4 179446122 179446271 -22882076 - HAL1 LINE L1 -1538 969 816 186 43 0 0 chr4 179447856 179447879 -22880468 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2033 142 0 0 chr4 179447882 179448164 -22880183 - AluSx SINE Alu -30 282 1 2511 116 0 19 chr4 179448250 179448621 -22879726 - THE1B LTR MaLR 0 364 1 276 338 137 0 chr4 179448820 179448959 -22879388 + L3 LINE CR1 328 485 -1092 249 57 0 0 chr4 179449780 179449815 -22878532 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 17428 47 1 1 chr4 179449815 179452721 -22875626 - L1PA5 LINE L1 -24 6130 3223 262 279 44 0 chr4 179452745 179452813 -22875534 - Charlie8 DNA MER1_type -2218 199 129 1315 59 0 0 chr4 179452813 179452982 -22875365 - L1PA4 LINE L1 0 6155 5987 2108 46 0 0 chr4 179452982 179453241 -22875106 + L1PA4 LINE L1 5729 5987 -167 27 0 0 0 chr4 179453612 179453639 -22874708 + AT_rich Low_complexity Low_complexity 1 27 0 729 183 0 15 chr4 179453639 179453770 -22874577 - FLAM_C SINE Alu -14 129 1 35 41 0 0 chr4 179453770 179453819 -22874528 + AT_rich Low_complexity Low_complexity 1 49 0 222 374 41 16 chr4 179456535 179456658 -22871689 + L3b LINE CR1 1415 1540 -43 7402 39 0 0 chr4 179457647 179458668 -22869679 + L1PA4 LINE L1 5130 6150 -5 4612 210 83 53 chr4 179458918 179460556 -22867791 + L1MC1 LINE L1 3980 5716 -617 3380 122 4 33 chr4 179460556 179461072 -22867275 + MER61D LTR ERV1 1 501 0 4612 210 83 53 chr4 179461072 179461710 -22866637 + L1MC1 LINE L1 5716 6333 0 1931 187 36 34 chr4 179461707 179462146 -22866201 + L1MC2 LINE L1 5894 6333 -11 * 1298 202 27 131 chr4 179462219 179462670 -22865677 - MER67D LTR ERV1 -110 404 1 2126 122 0 3 chr4 179462970 179463274 -22865073 - AluY SINE Alu -4 307 5 3708 154 56 55 chr4 179463303 179463345 -22865002 - L1MA9 LINE L1 -40 6272 6232 2282 172 38 45 chr4 179463345 179463815 -22864532 - LTR24 LTR ERV1 0 467 1 3708 154 56 55 chr4 179463815 179464154 -22864193 - L1MA9 LINE L1 -80 6232 5895 2240 98 16 7 chr4 179464154 179464459 -22863888 - AluSg SINE Alu -2 308 1 3708 154 56 55 chr4 179464459 179464935 -22863412 - L1MA9 LINE L1 -417 5895 5413 286 360 0 65 chr4 179465911 179466064 -22862283 + MIR SINE MIR 66 208 -54 26 30 0 0 chr4 179466703 179466736 -22861611 + AT_rich Low_complexity Low_complexity 1 33 0 1457 249 115 7 chr4 179468951 179469413 -22858934 - LTR33 LTR ERVL -5 516 5 289 274 86 0 chr4 179470343 179470460 -22857887 + MLT1I LTR MaLR 6 132 -277 3529 59 57 22 chr4 179471042 179471559 -22856788 + L1PA7 LINE L1 5261 5785 -369 42016 35 32 14 chr4 179471560 179477001 -22851346 + L1PA2 LINE L1 1 5540 -615 2949 51 12 7 chr4 179477103 179477512 -22850835 + L1PA2 LINE L1 5741 6151 -4 2997 65 0 0 chr4 179477512 179477887 -22850460 + L1PA7 LINE L1 5769 6151 -3 25 35 0 52 chr4 179479340 179479367 -22848980 + AT_rich Low_complexity Low_complexity 1 28 -27 2050 94 0 0 chr4 179479367 179479621 -22848726 + AluSx SINE Alu 33 286 -26 25 35 0 52 chr4 179479621 179479651 -22848696 + AT_rich Low_complexity Low_complexity 28 55 0 272 317 60 30 chr4 179481164 179481331 -22847016 + MLT1J1 LTR MaLR 41 212 -234 406 167 0 15 chr4 179481893 179481959 -22846388 + AluS SINE Alu 1 65 -246 208 287 35 21 chr4 179482086 179482229 -22846118 + (TATG)n Simple_repeat Simple_repeat 3 147 0 * 224 257 46 9 chr4 179482127 179482236 -22846111 + (TA)n Simple_repeat Simple_repeat 2 114 0 323 125 31 10 chr4 179482285 179482381 -22845966 - Charlie2a DNA MER1_type -511 2351 2254 916 255 31 45 chr4 179482493 179482846 -22845501 - Charlie2a DNA MER1_type -867 1995 1648 797 262 25 25 chr4 179482855 179482999 -22845348 - Charlie2a DNA MER1_type -2239 623 477 1559 159 101 40 chr4 179482999 179483326 -22845021 + MER7A DNA MER2_type 1 345 -1 797 262 25 25 chr4 179483326 179483425 -22844922 - Charlie2a DNA MER1_type -2384 478 380 465 300 101 66 chr4 179486341 179486606 -22841741 - MLT1J LTR MaLR -152 359 78 2177 143 22 6 chr4 179486606 179486964 -22841383 - THE1B LTR MaLR 0 364 1 465 300 101 66 chr4 179486964 179487045 -22841302 - MLT1J LTR MaLR -433 78 1 193 278 37 93 chr4 179487384 179487546 -22840801 + L2 LINE L2 1677 1829 -1485 2939 214 60 22 chr4 179487642 179488193 -22840154 - L1MB7 LINE L1 -48 6136 5544 1912 174 20 50 chr4 179488193 179488595 -22839752 - MLT1B LTR MaLR 0 390 1 2939 214 60 22 chr4 179488595 179488847 -22839500 - L1MB7 LINE L1 -640 5544 5303 2245 145 3 3 chr4 179489022 179489387 -22838960 - MER47A DNA MER2_type -1 365 1 225 349 28 18 chr4 179490123 179490232 -22838115 + L2 LINE L2 3197 3306 -7 274 309 152 29 chr4 179490321 179490564 -22837783 + L2 LINE L2 2543 2815 -499 2910 89 13 0 chr4 179491468 179491851 -22836496 + MLT2A2 LTR ERVL 1 388 -65 225 0 0 0 chr4 179491897 179491922 -22836425 + (TA)n Simple_repeat Simple_repeat 2 26 0 631 199 175 0 chr4 179492799 179492889 -22835458 + MER3 DNA MER1_type 15 88 -121 2261 110 0 0 chr4 179492889 179493190 -22835157 - AluSp SINE Alu -12 301 1 631 199 175 0 chr4 179493190 179493265 -22835082 + MER3 DNA MER1_type 88 209 0 1836 323 151 48 chr4 179493309 179493987 -22834360 + L2 LINE L2 124 731 -2583 3553 71 16 6 chr4 179493987 179494478 -22833869 - L1PA13 LINE L1 -6 6157 5662 1836 323 151 48 chr4 179494478 179495693 -22832654 + L2 LINE L2 731 2211 -1103 2168 109 0 34 chr4 179495763 179496085 -22832262 - AluY SINE Alu 0 311 1 5423 117 19 34 chr4 179496454 179497533 -22830814 + L1PA16 LINE L1 5095 6161 -5 31 44 0 0 chr4 179497558 179497603 -22830744 + AT_rich Low_complexity Low_complexity 1 45 0 949 240 44 4 chr4 179497626 179497897 -22830450 - L1MB7 LINE L1 -1029 5117 4836 74 12 0 0 chr4 179497897 179497978 -22830369 + AT_rich Low_complexity Low_complexity 1 81 0 237 155 0 0 chr4 179497978 179498036 -22830311 + (TA)n Simple_repeat Simple_repeat 1 58 0 360 244 45 62 chr4 179498124 179498300 -22830047 - HAL1 LINE L1 0 2507 2335 25 31 0 0 chr4 179498321 179498353 -22829994 + AT_rich Low_complexity Low_complexity 1 32 0 610 297 103 11 chr4 179498368 179498748 -22829599 + HAL1 LINE L1 1093 1507 -1000 659 198 0 0 chr4 179498791 179498907 -22829440 + MER58B DNA MER1_type 226 341 0 300 278 133 0 chr4 179498911 179499062 -22829285 + HAL1 LINE L1 1513 1683 -824 1379 235 23 44 chr4 179499241 179499670 -22828677 - LTR52 LTR ERVL -1 420 1 24 0 0 0 chr4 179499676 179499700 -22828647 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 179499768 179499789 -22828558 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 179500439 179500464 -22827883 + AT_rich Low_complexity Low_complexity 1 25 0 910 127 0 42 chr4 179500790 179500932 -22827415 - AluSq/x SINE Alu -177 136 1 365 344 162 32 chr4 179500999 179501345 -22827002 - L1MC4a LINE L1 -866 6942 6552 9442 229 17 9 chr4 179501540 179503907 -22824440 - L1 LINE L1 -1015 5131 2747 2910 0 0 0 chr4 179503907 179504218 -22824129 + AluYa5 SINE Alu 1 311 0 24 147 0 0 chr4 179504218 179504252 -22824095 + AT_rich Low_complexity Low_complexity 1 34 0 1357 176 0 7 chr4 179504362 179504634 -22823713 + AluYa5 SINE Alu 42 311 0 252 0 0 0 chr4 179504639 179504667 -22823680 + (TA)n Simple_repeat Simple_repeat 2 29 0 1453 243 11 159 chr4 179504698 179505257 -22823090 - L1PA13 LINE L1 -4850 2724 2256 411 313 25 17 chr4 179505923 179506160 -22822187 - L1PA13 LINE L1 -5276 2298 2085 1070 329 28 39 chr4 179506185 179506751 -22821596 - L1PA13 LINE L1 -6208 1366 807 50 51 0 0 chr4 179506935 179507013 -22821334 + AT_rich Low_complexity Low_complexity 1 78 0 428 216 207 0 chr4 179508581 179508697 -22819650 + MER34 LTR ERV1 1 140 -402 854 232 34 34 chr4 179508742 179508979 -22819368 + MER39 LTR ERV1 330 566 -141 1075 88 76 100 chr4 179508994 179509243 -22819104 - L1MA2 LINE L1 -1 6303 6061 369 185 30 35 chr4 179509263 179509374 -22818973 + MER34 LTR ERV1 385 662 -45 712 140 35 18 chr4 179510036 179510207 -22818140 + CT-rich Low_complexity Low_complexity 4 177 0 1950 239 92 19 chr4 179510282 179510943 -22817404 - L1MC2 LINE L1 -6 8036 6247 641 287 42 26 chr4 179511031 179511296 -22817051 - MLT2E LTR ERVL -95 533 265 911 240 11 22 chr4 179511360 179511635 -22816712 + L1M4 LINE L1 4366 4637 -1509 776 224 11 11 chr4 179511773 179511952 -22816395 - MER39 LTR ERV1 0 707 529 9220 30 2 0 chr4 179512132 179513227 -22815120 - L1PA3 LINE L1 -1177 4969 3873 7531 24 8 0 chr4 179513227 179514419 -22813928 + L1PA3 LINE L1 4954 6152 -3 954 232 52 8 chr4 179514419 179514669 -22813678 - MER39 LTR ERV1 -197 510 250 846 272 51 19 chr4 179514736 179515052 -22813295 + L1M4 LINE L1 4787 5112 -1034 30 45 0 0 chr4 179515623 179515667 -22812680 + AT_rich Low_complexity Low_complexity 1 44 0 1245 134 0 5 chr4 179516382 179516568 -22811779 + AluSg/x SINE Alu 124 308 -2 629 317 64 11 chr4 179516911 179517286 -22811061 + L2 LINE L2 2745 3136 -177 265 310 30 0 chr4 179517385 179517485 -22810862 + L2 LINE L2 3140 3242 -71 424 174 6 47 chr4 179518546 179518892 -22809455 + (TA)n Simple_repeat Simple_repeat 1 331 0 528 143 0 46 chr4 179518942 179519401 -22808946 + (TA)n Simple_repeat Simple_repeat 1 437 0 330 26 0 0 chr4 179519734 179519773 -22808574 + (TG)n Simple_repeat Simple_repeat 1 39 0 826 221 35 54 chr4 179520073 179520390 -22807957 - L1ME1 LINE L1 -5 6161 5851 628 286 40 4 chr4 179520395 179520647 -22807700 - L1M4 LINE L1 -1982 4164 3904 249 57 0 0 chr4 179520885 179520920 -22807427 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 39323 73 8 6 chr4 179520920 179527022 -22801325 - L1PA5 LINE L1 -24 6130 11 225 206 29 103 chr4 179527324 179527392 -22800955 + MER5A DNA MER1_type 9 71 -118 1268 131 0 4 chr4 179527449 179527694 -22800653 - AluY SINE Alu 0 336 1 562 13 0 38 chr4 179528670 179528749 -22799598 + L1PA2 LINE L1 6079 6154 -1 1737 200 35 11 chr4 179528807 179529242 -22799105 - LTR56 LTR ERV1 0 445 1 429 216 0 0 chr4 179529520 179529594 -22798753 + MER34C LTR ERV1 1 74 -511 2479 179 141 11 chr4 179529594 179530135 -22798212 - LTR36 LTR ERV1 0 611 1 446 333 56 85 chr4 179530168 179530616 -22797731 - LTR36-int LTR ERV1 -67 7055 6621 412 157 29 0 chr4 179530655 179530725 -22797622 - MER49 LTR ERV1 -171 752 681 654 210 88 54 chr4 179530751 179530956 -22797391 - LTR36-int LTR ERV1 -206 6125 5914 3740 165 59 52 chr4 179530985 179531873 -22796474 - LTR36-int LTR ERV1 -423 6175 5017 1007 187 45 109 chr4 179531870 179532137 -22796210 + MER83B-int LTR ERV1 3160 3409 -4128 * 330 265 68 8 chr4 179532233 179532365 -22795982 + MER83B-int LTR ERV1 1843 1982 -4616 * 458 190 10 10 chr4 179532362 179532462 -22795885 + MER83B-int LTR ERV1 3409 3508 -4029 2998 139 10 48 chr4 179532462 179533201 -22795146 + MER83B-int LTR ERV1 2299 2780 -2100 440 360 11 50 chr4 179533393 179533654 -22794693 - LTR36-int LTR ERV1 -1389 397 147 1685 155 59 16 chr4 179533734 179534273 -22794074 - LTR36 LTR ERV1 0 611 1 * 2685 144 60 20 chr4 179534273 179534768 -22793579 + MER34C LTR ERV1 71 585 0 1987 127 3 39 chr4 179534902 179535209 -22793138 + AluSx SINE Alu 3 298 -14 204 322 115 0 chr4 179535503 179535590 -22792757 + MER5A DNA MER1_type 13 109 -80 243 195 23 149 chr4 179535890 179535977 -22792370 + L2 LINE L2 3197 3272 0 1547 214 41 91 chr4 179537604 179538142 -22790205 + MLT2B1 LTR ERVL 3 513 -7 279 345 109 0 chr4 179539521 179539640 -22788707 + MIR SINE MIR 2 133 -129 23 54 0 0 chr4 179540254 179540291 -22788056 + AT_rich Low_complexity Low_complexity 1 37 0 1052 23 0 23 chr4 179540431 179540562 -22787785 + L1PA5 LINE L1 6024 6151 -3 3800 223 34 61 chr4 179540564 179540842 -22787505 + L1MB7 LINE L1 4156 4440 -1706 2337 101 3 0 chr4 179540842 179541148 -22787199 + AluSc SINE Alu 1 307 -2 3800 223 34 61 chr4 179541148 179542123 -22786224 + L1MB7 LINE L1 4440 5374 -772 3279 190 71 3 chr4 179542124 179542804 -22785543 + L1MB7 LINE L1 5410 6135 -49 431 260 78 26 chr4 179542793 179542947 -22785400 + L1ME LINE L1 5588 5749 -417 * 535 270 18 6 chr4 179542983 179543206 -22785141 + L1MA10 LINE L1 5945 6327 -7 249 233 110 14 chr4 179547858 179547931 -22780416 - MIR SINE MIR -73 189 110 23 54 0 0 chr4 179548423 179548460 -22779887 + AT_rich Low_complexity Low_complexity 1 37 0 854 305 70 47 chr4 179548552 179548586 -22779761 + L1ME LINE L1 701 733 -5528 855 184 23 0 chr4 179548586 179548760 -22779587 + L1MA1 LINE L1 6125 6302 0 854 305 70 47 chr4 179548760 179549862 -22778485 + L1ME LINE L1 733 1891 -4370 1523 194 32 14 chr4 179549862 179550145 -22778202 + AluJo SINE Alu 1 288 -24 854 305 70 47 chr4 179550145 179550489 -22777858 + L1ME LINE L1 1891 2226 -4035 1158 314 67 5 chr4 179550492 179550988 -22777359 - L2 LINE L2 -250 3063 2531 1029 192 25 42 chr4 179552645 179552885 -22775462 + LTR65 LTR ERV1 167 402 -267 286 253 11 74 chr4 179553175 179553285 -22775062 + LTR65 LTR ERV1 486 642 -26 290 227 85 99 chr4 179554917 179555058 -22773289 - L2 LINE L2 -2 3311 3173 468 343 20 5 chr4 179555191 179555392 -22772955 - MIR SINE MIR -10 252 49 29 0 0 0 chr4 179555573 179555602 -22772745 + AT_rich Low_complexity Low_complexity 1 29 0 466 314 85 45 chr4 179556148 179556549 -22771798 - MLT1L LTR MaLR -2 613 197 633 279 56 52 chr4 179556551 179556845 -22771502 + LTR33A LTR ERVL 2 342 -181 1584 209 28 14 chr4 179556845 179557204 -22771143 + MLT1A1 LTR MaLR 2 365 0 633 279 56 52 chr4 179557204 179557383 -22770964 + LTR33A LTR ERVL 342 519 -4 225 220 20 0 chr4 179557388 179557438 -22770909 - MLT1L LTR MaLR -408 207 157 1004 240 34 81 chr4 179557652 179558061 -22770286 - MLT1B LTR MaLR 0 390 1 5440 98 37 37 chr4 179558521 179559621 -22768726 + L1PA13 LINE L1 5064 6162 -1 358 272 54 34 chr4 179561856 179562003 -22766344 + MER5B DNA MER1_type 29 178 0 260 233 41 0 chr4 179562341 179562414 -22765933 + (CA)n Simple_repeat Simple_repeat 1 76 0 859 249 132 80 chr4 179562516 179562844 -22765503 - MLT1D LTR MaLR -2 503 141 13419 29 2 3 chr4 179562844 179565218 -22763129 + L1PA3 LINE L1 3783 6155 0 859 249 132 80 chr4 179565218 179565367 -22762980 - MLT1D LTR MaLR -364 141 1 1381 222 47 0 chr4 179568116 179568395 -22759952 + AluJo SINE Alu 1 292 -20 288 53 0 0 chr4 179569862 179569900 -22758447 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1473 225 119 37 chr4 179569999 179570885 -22757462 - LTR28 LTR ERV1 0 1020 1 2340 261 134 4 chr4 179571301 179571453 -22756894 - L1MD2 LINE L1 0 8042 7911 228 111 0 0 chr4 179571453 179571489 -22756858 + (CA)n Simple_repeat Simple_repeat 1 36 0 2340 261 134 4 chr4 179571489 179572204 -22756143 - L1MD2 LINE L1 -131 7911 7290 216 0 0 0 chr4 179572204 179572228 -22756119 + (TTAA)n Simple_repeat Simple_repeat 4 27 0 2340 261 134 4 chr4 179572228 179572265 -22756082 - L1MD2 LINE L1 -752 7290 6241 1334 240 134 112 chr4 179572250 179573215 -22755132 - L1MC4a LINE L1 -888 6920 5935 * 1899 167 0 0 chr4 179573218 179573518 -22754829 - AluJb SINE Alu -1 311 12 2339 166 31 2 chr4 179573643 179574059 -22754288 + MSTA LTR MaLR 1 428 0 2028 182 23 37 chr4 179575090 179575524 -22752823 + MSTA LTR MaLR 1 428 0 201 154 0 0 chr4 179576765 179576804 -22751543 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1555 201 16 7 chr4 179577516 179577825 -22750522 + AluJb SINE Alu 1 312 0 1120 208 35 0 chr4 179577839 179578070 -22750277 + AluJb SINE Alu 68 306 -6 238 333 40 0 chr4 179578076 179578151 -22750196 - L2 LINE L2 -22 3250 3173 617 282 50 23 chr4 179578695 179578915 -22749432 - MIR SINE MIR -11 251 26 23 0 0 0 chr4 179579870 179579893 -22748454 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 179579907 179579932 -22748415 + AT_rich Low_complexity Low_complexity 1 25 0 262 286 122 32 chr4 179580139 179580328 -22748019 + LTR67 LTR ERVL 352 557 0 197 394 109 22 chr4 179580662 179580799 -22747548 - MIR3 SINE MIR -57 151 3 618 313 59 36 chr4 179581258 179581565 -22746782 - L2 LINE L2 -2 3311 2998 * 1160 253 72 59 chr4 179581556 179582011 -22746336 - L2 LINE L2 -1940 1374 914 314 289 70 83 chr4 179582034 179582058 -22746289 - MIR SINE MIR -7 255 232 2243 46 0 18 chr4 179582058 179582374 -22745973 + AluY SINE Alu 1 311 0 314 289 70 83 chr4 179582374 179582504 -22745843 - MIR SINE MIR -30 232 102 193 349 110 9 chr4 179583091 179583200 -22745147 - MIR3 SINE MIR -77 131 12 2227 100 0 0 chr4 179583524 179583814 -22744533 - AluY SINE Alu -21 290 1 391 361 52 34 chr4 179584449 179584606 -22743741 + L1ME1 LINE L1 5383 5536 -630 1490 131 120 75 chr4 179584606 179584965 -22743382 + THE1C LTR MaLR 1 375 0 391 361 52 34 chr4 179584965 179585303 -22743044 + L1ME1 LINE L1 5536 5887 -279 596 195 184 26 chr4 179586399 179586589 -22741758 + MLT1C LTR MaLR 38 257 -210 351 187 0 27 chr4 179586590 179586665 -22741682 + MLT1C LTR MaLR 393 465 -2 25 31 0 0 chr4 179586726 179586758 -22741589 + AT_rich Low_complexity Low_complexity 1 32 0 802 266 113 5 chr4 179586822 179587044 -22741303 + MIR SINE MIR 1 246 -16 772 113 113 0 chr4 179587837 179587961 -22740386 + MER85 DNA T2_type 2 139 0 1018 234 57 4 chr4 179587990 179588217 -22740130 - MER8 DNA MER2_type 0 239 1 180 0 0 0 chr4 179588234 179588254 -22740093 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 1211 208 42 62 chr4 179588257 179588647 -22739700 + MLT2D LTR ERVL 1 480 -40 275 299 23 0 chr4 179588676 179588763 -22739584 + L1MC4 LINE L1 6615 6703 -1339 253 194 0 48 chr4 179588732 179588794 -22739553 - L1MCa LINE L1 -4362 2064 2006 * 260 279 0 0 chr4 179588789 179588868 -22739479 + L1MC4 LINE L1 6614 6692 -1350 225 121 0 0 chr4 179588884 179588917 -22739430 + MLT2D LTR ERVL 382 414 0 1468 160 59 56 chr4 179588947 179589321 -22739026 - THE1C LTR MaLR 0 375 1 336 321 37 52 chr4 179589329 179589463 -22738884 - MIR SINE MIR -115 147 16 6164 123 6 5 chr4 179589923 179592171 -22736176 + L1PA10 LINE L1 3862 6166 -2 201 74 0 0 chr4 179592825 179592852 -22735495 + (TTC)n Simple_repeat Simple_repeat 2 28 0 2404 138 3 3 chr4 179593495 179593857 -22734490 - THE1B LTR MaLR -2 362 1 8961 207 91 45 chr4 179594056 179594275 -22734072 + L1MDa LINE L1 3 211 -6329 1815 166 55 17 chr4 179594275 179594636 -22733711 - THE1C LTR MaLR 0 375 1 8961 207 91 45 chr4 179594636 179596875 -22731472 + L1MDa LINE L1 211 2840 -3700 1602 143 31 89 chr4 179596875 179596910 -22731437 - MER1B DNA MER1_type -2373 337 302 2215 115 0 0 chr4 179596910 179597214 -22731133 - AluSx SINE Alu -8 304 1 1602 143 31 89 chr4 179597214 179597536 -22730811 - MER1B DNA MER1_type -2408 302 1 8961 207 91 45 chr4 179597536 179597790 -22730557 + L1MDa LINE L1 2840 3081 -3459 3909 160 10 75 chr4 179597801 179598577 -22729770 + MER44D DNA MER2_type 8 605 0 2126 243 85 21 chr4 179598579 179599430 -22728917 + L1MDa LINE L1 3083 3987 -2553 217 232 36 18 chr4 179599444 179599500 -22728847 + MIR3 SINE MIR 123 179 -29 432 280 30 0 chr4 179601894 179601994 -22726353 - MER81 DNA DNA -4 110 8 2193 97 3 19 chr4 179602166 179602474 -22725873 + AluSc SINE Alu 1 303 -6 199 352 76 29 chr4 179602569 179602674 -22725673 - L2 LINE L2 -12 3260 3151 223 292 15 0 chr4 179603270 179603335 -22725012 + L2 LINE L2 2671 2736 -578 438 208 39 39 chr4 179603738 179603868 -22724479 + L2 LINE L2 3169 3298 -15 226 233 0 0 chr4 179604475 179604518 -22723829 + (TATG)n Simple_repeat Simple_repeat 3 45 0 284 253 32 21 chr4 179605203 179605298 -22723049 + L1MC5 LINE L1 7818 7913 -48 2717 194 79 5 chr4 179605743 179606301 -22722046 + MER7C DNA MER2_type 1 599 -3 212 306 0 0 chr4 179606304 179606353 -22721994 + MIR3 SINE MIR 9 57 -151 1921 114 25 14 chr4 179606365 179606646 -22721701 + AluSg1 SINE Alu 1 284 -25 48 0 0 0 chr4 179606646 179606694 -22721653 + AT_rich Low_complexity Low_complexity 1 48 0 211 235 88 66 chr4 179607217 179607353 -22720994 + L2 LINE L2 3159 3297 -16 258 212 165 0 chr4 179609007 179609093 -22719254 + MIR3 SINE MIR 78 183 -25 355 262 134 23 chr4 179609382 179609554 -22718793 - MIR SINE MIR 0 262 72 21 71 0 0 chr4 179609661 179609703 -22718644 + AT_rich Low_complexity Low_complexity 1 42 0 363 256 111 70 chr4 179610117 179610211 -22718136 - L2 LINE L2 -17 3296 3207 1652 175 30 3 chr4 179610211 179610508 -22717839 - AluJb SINE Alu -7 305 1 363 256 111 70 chr4 179610508 179610585 -22717762 - L2 LINE L2 -106 3207 3118 3257 79 0 24 chr4 179611702 179612157 -22716190 + MLT2A1 LTR ERVL 1 444 0 7444 33 1 2 chr4 179612643 179614048 -22714299 + L1PA5 LINE L1 4747 6150 -4 24 0 0 0 chr4 179614155 179614179 -22714168 + AT_rich Low_complexity Low_complexity 1 24 0 733 272 87 42 chr4 179614691 179614778 -22713569 + L1MC5 LINE L1 7388 7470 -491 225 94 0 0 chr4 179614778 179614810 -22713537 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 733 272 87 42 chr4 179614810 179615196 -22713151 + L1MC5 LINE L1 7470 7882 -79 528 213 9 0 chr4 179615196 179615304 -22713043 - MLT1A1 LTR MaLR 0 365 257 227 289 66 33 chr4 179615405 179615526 -22712821 - L1ME LINE L1 -461 5709 5585 573 268 6 56 chr4 179615815 179615994 -22712353 - MER96 DNA MER1_type? 0 175 6 526 254 0 9 chr4 179616001 179616115 -22712232 - MER58A DNA MER1_type 0 113 1 262 256 88 73 chr4 179616120 179616437 -22711910 - L1MEd LINE L1 -5089 1030 709 1009 197 16 0 chr4 179616528 179616711 -22711636 + MER5A DNA MER1_type 4 189 0 229 315 48 27 chr4 179619896 179620188 -22708159 + L1M4 LINE L1 4311 4608 -1538 227 224 17 0 chr4 179621172 179621230 -22707117 + CT-rich Low_complexity Low_complexity 1 59 0 224 352 56 24 chr4 179621683 179621808 -22706539 - MER91A DNA MER1_type -67 129 1 14906 142 19 5 chr4 179621851 179623249 -22705098 - Tigger1 DNA MER2_type -2 2416 968 2646 94 21 0 chr4 179623249 179623633 -22704714 - L1PA13 LINE L1 -1 6162 5771 14906 142 19 5 chr4 179623633 179624616 -22703731 - Tigger1 DNA MER2_type -1450 968 1 281 241 86 26 chr4 179624681 179624797 -22703550 - L1P5 LINE L1 -700 5451 5329 22 0 0 0 chr4 179625521 179625543 -22702804 + AT_rich Low_complexity Low_complexity 1 22 0 240 271 59 24 chr4 179626701 179626786 -22701561 - MIR SINE MIR -73 189 102 29 28 0 0 chr4 179627029 179627065 -22701282 + AT_rich Low_complexity Low_complexity 1 36 0 1624 282 72 23 chr4 179628254 179628771 -22699576 + Zaphod DNA AcHobo 9 550 -3481 330 309 208 27 chr4 179628858 179629152 -22699195 + L2 LINE L2 1863 2209 -1105 205 333 71 0 chr4 179629567 179629651 -22698696 - L2 LINE L2 -17 3296 3207 2634 266 100 14 chr4 179630006 179630723 -22697624 - MLT-int LTR MaLR -109 1626 848 1658 166 107 46 chr4 179630805 179631178 -22697169 - MSTD LTR MaLR 0 396 1 1881 238 42 37 chr4 179631178 179631687 -22696660 + MER74B LTR ERVL 63 545 -77 870 258 71 55 chr4 179631839 179632203 -22696144 + L2 LINE L2 1993 2362 -952 569 294 109 33 chr4 179632277 179632716 -22695631 + L2 LINE L2 2668 3127 -186 31 58 0 0 chr4 179632769 179632821 -22695526 + AT_rich Low_complexity Low_complexity 1 52 0 309 290 29 72 chr4 179632864 179632963 -22695384 + L2 LINE L2 3182 3275 -38 1589 160 62 46 chr4 179632963 179633332 -22695015 + THE1C LTR MaLR 1 375 0 309 290 29 72 chr4 179633332 179633370 -22694977 + L2 LINE L2 3275 3313 0 23 68 0 0 chr4 179633628 179633672 -22694675 + AT_rich Low_complexity Low_complexity 1 44 0 21 71 0 0 chr4 179633846 179633888 -22694459 + AT_rich Low_complexity Low_complexity 1 42 0 610 291 131 27 chr4 179635083 179635684 -22692663 - L1ME3A LINE L1 -189 5964 5301 524 276 94 94 chr4 179635701 179636201 -22692146 - L1ME3A LINE L1 -3535 2594 2095 714 292 122 54 chr4 179636306 179637341 -22691006 - L1MEd LINE L1 -4746 1564 417 524 15 15 0 chr4 179637387 179637452 -22690895 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 1914 172 35 60 chr4 179637452 179637883 -22690464 - MLT2B2 LTR ERVL -64 451 32 1969 115 35 3 chr4 179638121 179638409 -22689938 - AluSc SINE Alu -12 297 1 24 32 0 0 chr4 179638452 179638483 -22689864 + AT_rich Low_complexity Low_complexity 1 31 0 1807 113 30 116 chr4 179638853 179639068 -22689279 - MER1B DNA MER1_type -2374 338 167 1851 143 28 0 chr4 179639068 179639354 -22688993 + AluSx SINE Alu 2 295 -17 1807 113 30 116 chr4 179639354 179639508 -22688839 - MER1B DNA MER1_type -2545 167 1 375 164 82 0 chr4 179639592 179639665 -22688682 + MADE1 DNA Mariner 1 79 -1 376 176 24 0 chr4 179641238 179641323 -22687024 - L1MA8 LINE L1 -2 7708 7622 12451 213 58 20 chr4 179641370 179644353 -22683994 - L1MA8 LINE L1 -267 7443 4421 2739 16 0 0 chr4 179644353 179644663 -22683684 - AluYa5 SINE Alu -1 310 1 12451 213 58 20 chr4 179644663 179647013 -22681334 - L1MA8 LINE L1 -3289 4421 2161 308 366 6 31 chr4 179647916 179648077 -22680270 - L1MA8 LINE L1 -5981 1515 1359 25 0 0 0 chr4 179648272 179648297 -22680050 + AT_rich Low_complexity Low_complexity 1 25 0 288 265 29 39 chr4 179648881 179648983 -22679364 - MER5A DNA MER1_type -45 144 44 238 268 27 107 chr4 179648891 179649003 -22679344 + MER5A DNA MER1_type 65 167 -22 * 35 24 0 0 chr4 179649065 179649107 -22679240 + AT_rich Low_complexity Low_complexity 1 42 0 1409 198 43 25 chr4 179649152 179649457 -22678890 - AluJb SINE Alu 0 310 1 255 254 132 26 chr4 179649461 179649575 -22678772 + L2 LINE L2 3117 3242 -71 6867 56 0 41 chr4 179649656 179650626 -22677721 - L1PA7 LINE L1 -2 6152 5192 748 84 0 0 chr4 179650626 179650733 -22677614 + L1P LINE L1 4251 4357 -1789 319 248 47 34 chr4 179650752 179650901 -22677446 + L1ME4a LINE L1 5970 6120 -1 30 45 0 0 chr4 179652715 179652759 -22675588 + AT_rich Low_complexity Low_complexity 1 44 0 367 288 61 61 chr4 179652938 179653264 -22675083 - L1ME3 LINE L1 -216 5946 5621 238 277 145 54 chr4 179653293 179653761 -22674586 - L1ME3 LINE L1 -2601 3545 3121 1676 65 9 13 chr4 179653761 179653990 -22674357 - L1PA8 LINE L1 -5 6167 5940 238 277 145 54 chr4 179653990 179654028 -22674319 - L1ME3 LINE L1 -3025 3121 3088 1544 272 129 17 chr4 179654028 179654624 -22673723 + MLT2F LTR ERVL 1 663 0 238 277 145 54 chr4 179654624 179655036 -22673311 - L1ME3 LINE L1 -3058 3088 2543 42856 42 6 11 chr4 179655057 179661244 -22667103 + L1PA4 LINE L1 1 6152 -3 4466 204 34 35 chr4 179661272 179662604 -22665743 - L1MA10 LINE L1 -1 6333 5001 2116 202 17 78 chr4 179662795 179663384 -22664963 - L1MA10 LINE L1 -1116 5030 4478 * 5033 200 14 19 chr4 179663382 179663929 -22664418 + L1 LINE L1 3272 3820 -2326 2383 159 119 2 chr4 179663929 179664376 -22663971 - MER61D LTR ERV1 -1 500 2 5033 200 14 19 chr4 179664376 179664957 -22663390 + L1 LINE L1 3820 4394 -1752 1241 197 108 17 chr4 179665594 179665921 -22662426 - MLT1A1 LTR MaLR 0 365 1 21 36 0 0 chr4 179665931 179665959 -22662388 + AT_rich Low_complexity Low_complexity 1 28 0 244 349 23 12 chr4 179667639 179667725 -22660622 - MIR SINE MIR -86 122 36 729 260 100 60 chr4 179668412 179668706 -22659641 + MLT1I LTR MaLR 24 337 -72 1690 216 177 2 chr4 179668706 179669136 -22659211 + MLT1D LTR MaLR 1 505 0 729 260 100 60 chr4 179669136 179669210 -22659137 + MLT1I LTR MaLR 337 407 -2 1555 172 4 4 chr4 179669427 179669695 -22658652 + L1MA10 LINE L1 5521 5788 -546 1112 105 165 31 chr4 179669697 179670189 -22658158 + MER4B LTR ERV1 3 610 0 2493 200 2 34 chr4 179670243 179670384 -22657963 + L1MA10 LINE L1 5790 5934 -400 1956 145 90 31 chr4 179670384 179670797 -22657550 + LTR23 LTR ERV1 1 437 0 2493 200 2 34 chr4 179670797 179671216 -22657131 + L1MA10 LINE L1 5934 6332 -2 1679 185 0 0 chr4 179671833 179672125 -22656222 - AluSx SINE Alu -17 295 4 477 122 37 0 chr4 179672923 179673005 -22655342 - L1MB1 LINE L1 0 6168 6084 3455 232 17 41 chr4 179673219 179674166 -22654181 + MER63C DNA MER1_type 7 930 0 291 208 0 0 chr4 179674363 179674416 -22653931 + AluSp/q SINE Alu 245 297 -6 709 153 0 0 chr4 179674416 179674527 -22653820 - AluSc SINE Alu -54 255 145 7213 47 3 0 chr4 179674704 179675834 -22652513 - L1PA5 LINE L1 0 6154 5019 258 176 98 0 chr4 179675834 179675885 -22652462 - AluY SINE Alu -186 115 60 1804 140 11 0 chr4 179675965 179676306 -22652041 - AluSg SINE Alu 0 344 1 23 0 0 0 chr4 179676429 179676452 -22651895 + AT_rich Low_complexity Low_complexity 1 23 0 183 100 0 0 chr4 179677261 179677291 -22651056 + (TG)n Simple_repeat Simple_repeat 2 31 0 330 353 37 16 chr4 179677291 179677481 -22650866 + MIR SINE MIR 9 202 -60 3215 136 90 16 chr4 179677970 179678538 -22649809 + LTR9 LTR ERV1 3 612 0 252 0 0 0 chr4 179680141 179680169 -22648178 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 5117 41 8 3 chr4 179680226 179680862 -22647485 - L1PA4 LINE L1 -2 6153 5515 4685 45 6 0 chr4 179680861 179681578 -22646769 + L1PA4 LINE L1 4766 5485 -669 434 346 79 57 chr4 179681792 179682360 -22645987 - L2 LINE L2 0 3272 2704 180 125 0 0 chr4 179682794 179682826 -22645521 + (GA)n Simple_repeat Simple_repeat 1 32 0 517 277 18 0 chr4 179683518 179683738 -22644609 - L1MEd LINE L1 -3653 2476 2253 4324 194 47 34 chr4 179683743 179685115 -22643232 - L1MC1 LINE L1 -1 6750 5362 325 239 43 0 chr4 179685125 179685217 -22643130 - L1MC1 LINE L1 -4260 2304 2209 255 155 0 17 chr4 179685314 179685372 -22642975 - L1MC1 LINE L1 -4554 2010 1954 * 2015 203 90 27 chr4 179685370 179686266 -22642081 - L1MC1 LINE L1 -4853 1192 578 499 339 50 6 chr4 179686451 179686790 -22641557 - L1MEd LINE L1 -5321 798 445 429 250 40 16 chr4 179687681 179687805 -22640542 + MIR SINE MIR 53 179 -83 306 354 24 57 chr4 179688457 179688669 -22639678 + L2 LINE L2 2637 2841 -473 857 153 23 6 chr4 179688788 179688965 -22639382 - MER53 DNA DNA 0 189 10 221 293 40 73 chr4 179689043 179689193 -22639154 + L2 LINE L2 3169 3313 0 267 343 50 0 chr4 179689626 179689725 -22638622 + L3 LINE CR1 1047 1150 -427 249 263 40 10 chr4 179689737 179689836 -22638511 - MIR SINE MIR -27 235 134 227 313 275 0 chr4 179689952 179690134 -22638213 + L3 LINE CR1 1168 1399 -178 870 291 125 5 chr4 179691689 179692098 -22636249 + LTR16B LTR ERVL 5 462 -2 685 179 126 0 chr4 179692943 179693094 -22635253 + FRAM SINE Alu 4 173 -3 1797 110 4 0 chr4 179693275 179693512 -22634835 - AluSc SINE Alu -16 293 56 2057 66 289 6 chr4 179693570 179693919 -22634428 + LTR7 LTR ERV1 1 448 -2 12790 156 65 39 chr4 179693921 179697874 -22630473 + HERVH LTR ERV1 1 7713 0 2584 75 128 8 chr4 179697874 179698274 -22630073 + LTR7 LTR ERV1 1 448 -2 418 294 110 50 chr4 179699328 179699546 -22628801 + L1ME4a LINE L1 5654 5884 -237 336 238 50 10 chr4 179699601 179699702 -22628645 + L1ME4a LINE L1 5973 6077 -44 1939 144 0 13 chr4 179699714 179700012 -22628335 + AluJo SINE Alu 3 296 -16 375 264 176 45 chr4 179700105 179700503 -22627844 - HAL1 LINE L1 -33 2474 2025 1207 71 0 0 chr4 179700613 179700768 -22627579 + HERV17 LTR ERV1 1251 1405 -7221 9079 68 5 9 chr4 179700782 179702071 -22626276 + HERV17 LTR ERV1 1808 3090 -3806 3038 69 0 0 chr4 179702113 179702504 -22625843 - L1PA5 LINE L1 -4 6150 5760 7054 38 5 2 chr4 179702511 179703385 -22624962 + HERV17 LTR ERV1 3072 3947 -2949 2947 148 33 2 chr4 179703379 179703867 -22624480 + HERV17 LTR ERV1 4594 5096 -2717 * 11601 196 19 12 chr4 179703856 179706185 -22622162 + HERV17 LTR ERV1 5469 7811 -2 931 232 44 13 chr4 179706187 179706549 -22621798 + LTR2 LTR ERV1 3 449 0 24 53 0 0 chr4 179706882 179706920 -22621427 + AT_rich Low_complexity Low_complexity 1 38 0 2203 121 0 0 chr4 179707885 179708174 -22620173 - AluSx SINE Alu -20 292 4 1218 155 49 4 chr4 179708539 179708765 -22619582 - MER21A LTR ERV1 -3 928 693 * 2187 191 148 12 chr4 179708760 179709239 -22619108 - MER21B LTR ERV1 -304 559 10 2138 121 21 34 chr4 179709239 179709619 -22618728 - THE1C LTR MaLR 0 375 1 2187 191 148 12 chr4 179709619 179709631 -22618716 - MER21B LTR ERV1 -853 10 1 3270 104 32 6 chr4 179709952 179710452 -22617895 - LTR10D LTR ERV1 0 513 1 489 241 70 108 chr4 179710798 179711139 -22617208 + LTR35 LTR ERV1 350 677 -2 2306 104 3 3 chr4 179711934 179712243 -22616104 - AluSc SINE Alu 0 309 1 1349 197 47 34 chr4 179712402 179712722 -22615625 - MLT1A1 LTR MaLR -1 364 41 8003 101 3 12 chr4 179712900 179714154 -22614193 + HERVH LTR ERV1 1743 2985 -4728 2452 94 21 0 chr4 179714150 179714522 -22613825 + HERVH LTR ERV1 3140 3519 -4194 * 24 53 0 0 chr4 179714783 179714821 -22613526 + AT_rich Low_complexity Low_complexity 1 38 0 242 326 0 31 chr4 179715024 179715122 -22613225 + MIR3 SINE MIR 102 196 -12 459 157 139 0 chr4 179716370 179716478 -22611869 - MER50 LTR ERV1 -611 123 1 200 214 0 0 chr4 179717058 179717100 -22611247 + CT-rich Low_complexity Low_complexity 2 43 0 656 227 8 0 chr4 179717368 179717496 -22610851 - FLAM_C SINE Alu 0 133 5 23 0 0 0 chr4 179718395 179718418 -22609929 + AT_rich Low_complexity Low_complexity 1 23 0 25 75 0 0 chr4 179718722 179718775 -22609572 + AT_rich Low_complexity Low_complexity 1 53 0 23 0 0 0 chr4 179719373 179719396 -22608951 + AT_rich Low_complexity Low_complexity 1 23 0 401 269 94 76 chr4 179719434 179719490 -22608857 - MLT1H1 LTR MaLR -8 534 480 1989 96 11 4 chr4 179719490 179719762 -22608585 + AluSg SINE Alu 37 310 0 401 269 94 76 chr4 179719762 179720176 -22608171 - MLT1H1 LTR MaLR -62 480 82 2047 112 0 11 chr4 179720176 179720490 -22607857 - AluSx SINE Alu 0 311 1 383 243 160 11 chr4 179720909 179721090 -22607257 - L1ME LINE L1 -303 5818 5611 279 0 0 0 chr4 179721125 179721156 -22607191 + (TA)n Simple_repeat Simple_repeat 1 31 0 183 129 0 0 chr4 179721288 179721319 -22607028 + (CG)n Simple_repeat Simple_repeat 1 31 0 33 43 0 0 chr4 179721505 179721552 -22606795 + GC_rich Low_complexity Low_complexity 1 47 0 33091 41 31 3 chr4 179721659 179726030 -22602317 - L1P LINE L1 -1640 4506 13 716 153 51 40 chr4 179726046 179726222 -22602125 + L1MA9 LINE L1 6135 6312 0 283 299 68 0 chr4 179726533 179726680 -22601667 + L1ME1 LINE L1 3605 3761 -2385 1128 250 71 44 chr4 179726728 179727715 -22600632 + L1ME1 LINE L1 4169 5168 -978 2179 236 52 59 chr4 179727756 179727953 -22600394 + L1ME1 LINE L1 5254 5451 -715 2741 142 12 0 chr4 179727953 179728376 -22599971 + MSTA LTR MaLR 1 428 0 2179 236 52 59 chr4 179728376 179729030 -22599317 + L1ME1 LINE L1 5451 6099 -67 452 301 115 13 chr4 179729177 179729464 -22598883 + L1M4 LINE L1 5127 5452 -726 919 260 58 40 chr4 179729465 179729792 -22598555 + MLT1E LTR MaLR 261 593 0 305 227 15 0 chr4 179729793 179729859 -22598488 + MIR SINE MIR 110 176 -86 370 326 147 0 chr4 179730447 179730637 -22597710 + MER115 DNA AcHobo 152 369 -324 545 298 54 5 chr4 179730705 179730910 -22597437 + MER115 DNA AcHobo 465 679 -14 429 271 98 8 chr4 179731119 179731241 -22597106 - L2 LINE L2 -1 3312 3180 21 0 0 0 chr4 179732618 179732639 -22595708 + AT_rich Low_complexity Low_complexity 1 21 0 811 221 40 16 chr4 179732708 179732957 -22595390 - L1M4 LINE L1 -3173 2973 2719 863 104 0 8 chr4 179733373 179733498 -22594849 - AluSg/x SINE Alu -15 295 172 22 0 0 0 chr4 179733587 179733609 -22594738 + AT_rich Low_complexity Low_complexity 1 22 0 268 235 106 12 chr4 179733844 179733929 -22594418 - MIR SINE MIR -14 248 156 206 131 12 60 chr4 179734443 179734527 -22593820 + (CAATA)n Simple_repeat Simple_repeat 5 84 0 216 171 13 53 chr4 179734724 179734800 -22593547 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 276 351 21 0 chr4 179734909 179735003 -22593344 + L2 LINE L2 2748 2843 -471 1203 273 66 13 chr4 179735006 179735398 -22592949 + L2 LINE L2 1307 1719 -1595 25 0 0 0 chr4 179735488 179735513 -22592834 + AT_rich Low_complexity Low_complexity 1 25 0 5707 98 11 2 chr4 179735513 179736679 -22591668 - L1PA14 LINE L1 -3 6158 4949 1626 211 34 0 chr4 179736705 179737055 -22591292 - L1MA4 LINE L1 -130 6170 5809 509 239 15 0 chr4 179737052 179737186 -22591161 + L1MA4 LINE L1 6160 6295 -5 * 739 305 143 12 chr4 179737216 179737537 -22590810 + L2 LINE L2 1738 2100 -1214 363 203 127 68 chr4 179738375 179738493 -22589854 + FLAM_A SINE Alu 1 125 -8 1800 180 0 3 chr4 179740441 179740741 -22587606 + AluJo SINE Alu 1 299 -13 2050 105 7 27 chr4 179741195 179741491 -22586856 - AluSx SINE Alu -22 290 1 23 0 0 0 chr4 179742295 179742318 -22586029 + AT_rich Low_complexity Low_complexity 1 23 0 425 273 107 51 chr4 179743493 179743746 -22584601 - L3 LINE CR1 -380 1197 931 1834 164 0 10 chr4 179743768 179744060 -22584287 + AluJo SINE Alu 3 291 -21 2544 142 50 89 chr4 179744151 179744241 -22584106 + MER4E LTR ERV1 1 93 -673 1941 70 26 4 chr4 179744241 179744514 -22583833 + AluY SINE Alu 3 281 -30 2544 142 50 89 chr4 179744514 179745052 -22583295 + MER4E LTR ERV1 93 761 -5 2182 60 11 7 chr4 179745695 179746017 -22582330 + AluY SINE Alu 1 323 0 24 0 0 0 chr4 179748904 179748928 -22579419 + AT_rich Low_complexity Low_complexity 1 24 0 28 71 0 0 chr4 179749403 179749459 -22578888 + AT_rich Low_complexity Low_complexity 1 56 0 23 54 0 0 chr4 179750308 179750345 -22578002 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr4 179750614 179750641 -22577706 + AT_rich Low_complexity Low_complexity 1 27 0 311 245 104 120 chr4 179751463 179751655 -22576692 + MER5A DNA MER1_type 1 189 0 1842 191 31 3 chr4 179751830 179752185 -22576162 + MLT1A1 LTR MaLR 1 365 0 673 334 64 15 chr4 179752300 179752422 -22575925 - L2 LINE L2 -488 2826 2711 4438 141 22 71 chr4 179752422 179753987 -22574360 + L1PA15 LINE L1 4640 6164 -1 673 334 64 15 chr4 179753987 179754193 -22574154 - L2 LINE L2 -603 2711 2482 3439 168 6 14 chr4 179756719 179757340 -22571007 + L1PB4 LINE L1 5534 6149 -7 30 27 0 0 chr4 179758570 179758607 -22569740 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr4 179758660 179758683 -22569664 + (TG)n Simple_repeat Simple_repeat 2 24 0 236 161 18 18 chr4 179758693 179758749 -22569598 + (TA)n Simple_repeat Simple_repeat 1 56 0 238 264 46 0 chr4 179758755 179758842 -22569505 - L1MC4 LINE L1 -1337 6705 6615 211 130 0 109 chr4 179759867 179759913 -22568434 - MIR SINE MIR 0 262 222 383 364 0 0 chr4 179759957 179760078 -22568269 - MIR SINE MIR -133 129 9 23 54 0 0 chr4 179760169 179760206 -22568141 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr4 179761291 179761317 -22567030 + AT_rich Low_complexity Low_complexity 1 26 0 346 318 36 18 chr4 179762010 179762120 -22566227 + MIR SINE MIR 9 120 -142 1728 319 113 16 chr4 179762143 179762583 -22565764 + L2 LINE L2 313 709 -2605 794 209 128 11 chr4 179762583 179762770 -22565577 - MER3 DNA MER1_type 0 209 1 1728 319 113 16 chr4 179762770 179763176 -22565171 + L2 LINE L2 709 1241 -2073 638 271 113 21 chr4 179763187 179763619 -22564728 - L1ME LINE L1 -5079 991 520 261 0 0 0 chr4 179763664 179763693 -22564654 + (TC)n Simple_repeat Simple_repeat 2 30 0 270 171 9 153 chr4 179763992 179764103 -22564244 - L1ME3 LINE L1 -100 6062 5968 494 221 0 41 chr4 179764289 179764411 -22563936 - L1ME3 LINE L1 -242 5928 5812 225 329 12 0 chr4 179764416 179764498 -22563849 + L2 LINE L2 1828 1910 -1404 536 0 16 0 chr4 179764720 179764784 -22563563 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 31 44 0 0 chr4 179764844 179764889 -22563458 + AT_rich Low_complexity Low_complexity 1 45 0 229 200 22 0 chr4 179766292 179766337 -22562010 + (TG)n Simple_repeat Simple_repeat 1 46 0 1718 208 23 11 chr4 179766674 179767025 -22561322 - MLT1A1 LTR MaLR -10 355 1 477 284 52 89 chr4 179767100 179767371 -22560976 + MLT1J LTR MaLR 216 476 -35 620 281 18 37 chr4 179768269 179768486 -22559861 + L2 LINE L2 3101 3313 0 180 224 102 0 chr4 179769673 179769722 -22558625 - L2 LINE L2 -10 3303 3250 31 0 0 0 chr4 179770492 179770523 -22557824 + AT_rich Low_complexity Low_complexity 1 31 0 2150 122 48 20 chr4 179770524 179770877 -22557470 + THE1B LTR MaLR 2 364 0 450 83 0 0 chr4 179771998 179772070 -22556277 + (TTTA)n Simple_repeat Simple_repeat 2 73 0 2115 113 3 0 chr4 179772074 179772356 -22555991 - AluSg SINE Alu -26 284 2 24 0 0 0 chr4 179772649 179772673 -22555674 + AT_rich Low_complexity Low_complexity 1 24 0 187 279 0 0 chr4 179772860 179772903 -22555444 - L2 LINE L2 -35 3278 3236 1320 302 33 84 chr4 179772906 179773658 -22554689 - MER21B LTR ERV1 -149 714 1 263 342 13 0 chr4 179773904 179773983 -22554364 - MIR SINE MIR -87 121 42 3544 170 18 28 chr4 179774412 179775093 -22553254 - MER50 LTR ERV1 -22 712 39 308 223 0 17 chr4 179775221 179775316 -22553031 - L1P5 LINE L1 -660 5494 5405 306 148 0 0 chr4 179775535 179775589 -22552758 + (TCCCC)n Simple_repeat Simple_repeat 3 56 0 332 300 62 25 chr4 179776714 179776874 -22551473 + MIR3 SINE MIR 32 197 -11 416 100 0 0 chr4 179777288 179777348 -22550999 + AluJ/FLAM SINE Alu 11 70 -242 25 51 0 0 chr4 179778330 179778369 -22549978 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr4 179778775 179778804 -22549543 + AT_rich Low_complexity Low_complexity 1 29 0 2066 199 13 14 chr4 179779033 179779635 -22548712 - L1PA15-16 LINE L1 -3503 3346 2743 2511 101 16 16 chr4 179779635 179780010 -22548337 + THE1C LTR MaLR 1 375 0 6463 123 54 193 chr4 179780010 179781846 -22546501 + THE1C-int LTR MaLR 1 1580 0 2272 143 11 16 chr4 179781846 179782223 -22546124 + THE1C LTR MaLR 1 375 0 7136 134 34 7 chr4 179782224 179783474 -22544873 - L1PA15-16 LINE L1 -4103 2746 1463 2109 162 27 5 chr4 179783473 179783882 -22544465 - L1PA15-16 LINE L1 -6389 460 1 * 970 195 181 0 chr4 179783885 179784090 -22544257 - L1M2 LINE L1 -644 5656 5415 6892 258 87 24 chr4 179784091 179787429 -22540918 - L1M4 LINE L1 -825 6132 2583 25 31 0 0 chr4 179787529 179787561 -22540786 + AT_rich Low_complexity Low_complexity 1 32 0 1206 214 35 45 chr4 179787564 179787854 -22540493 + AluJb SINE Alu 1 287 -25 180 0 0 0 chr4 179787855 179787875 -22540472 + (CTA)n Simple_repeat Simple_repeat 1 20 0 1640 250 136 11 chr4 179787886 179788451 -22539896 - L1M4 LINE L1 -5257 1602 967 1215 288 87 22 chr4 179788455 179789039 -22539308 + L1MC4 LINE L1 6452 7073 -969 270 236 7 0 chr4 179789040 179789117 -22539230 + L1MC4a LINE L1 6931 6994 -814 28 86 0 0 chr4 179789272 179789342 -22539005 + AT_rich Low_complexity Low_complexity 1 70 0 22 0 0 0 chr4 179789983 179790005 -22538342 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 179790202 179790230 -22538117 + AT_rich Low_complexity Low_complexity 1 28 0 255 399 83 10 chr4 179790565 179790758 -22537589 + MIR SINE MIR 18 224 -38 * 356 300 60 0 chr4 179790756 179790856 -22537491 - L2 LINE L2 -1 3312 3207 1547 166 10 31 chr4 179791202 179791492 -22536855 - AluJo SINE Alu -12 300 17 22 56 0 0 chr4 179791617 179791653 -22536694 + AT_rich Low_complexity Low_complexity 1 36 0 1656 122 44 7 chr4 179791720 179791990 -22536357 - AluSg SINE Alu -10 300 21 262 293 91 0 chr4 179792910 179793009 -22535338 - L2 LINE L2 -1 3312 3205 527 288 168 53 chr4 179793697 179794184 -22534163 - MLT1G1 LTR MaLR -12 583 1 22 56 0 0 chr4 179794372 179794408 -22533939 + AT_rich Low_complexity Low_complexity 1 36 0 298 267 59 0 chr4 179794416 179794517 -22533830 - MIR SINE MIR -46 216 110 2026 190 21 8 chr4 179794520 179794904 -22533443 - MSTB LTR MaLR -2 424 36 22 0 0 0 chr4 179795755 179795777 -22532570 + AT_rich Low_complexity Low_complexity 1 22 0 890 203 132 96 chr4 179797242 179797680 -22530667 + MLT1C LTR MaLR 6 459 -8 261 0 0 0 chr4 179797925 179797954 -22530393 + (CA)n Simple_repeat Simple_repeat 2 30 0 315 0 0 0 chr4 179798174 179798209 -22530138 + (CA)n Simple_repeat Simple_repeat 1 35 0 545 272 29 32 chr4 179798302 179798548 -22529799 - L1MEc LINE L1 -3568 2647 2403 12983 173 32 14 chr4 179798548 179800897 -22527450 - Tigger2 DNA MER2_type 0 2718 327 309 246 51 8 chr4 179801139 179801257 -22527090 - L1MEc LINE L1 -4735 1661 1539 23 78 0 0 chr4 179801358 179801409 -22526938 + AT_rich Low_complexity Low_complexity 1 51 0 25 51 0 0 chr4 179801521 179801560 -22526787 + AT_rich Low_complexity Low_complexity 1 39 0 349 301 96 103 chr4 179801848 179802316 -22526031 - L2 LINE L2 -759 2555 2091 6971 196 86 55 chr4 179802344 179804046 -22524301 + MER52A LTR ERV1 1 1755 0 445 133 0 56 chr4 179804158 179804248 -22524099 + L1PA16 LINE L1 5108 5192 -954 5680 135 19 0 chr4 179804348 179805283 -22523064 + L1PA16 LINE L1 5214 6165 -1 1841 145 3 0 chr4 179805554 179805844 -22522503 + AluSg SINE Alu 1 291 -19 284 386 94 4 chr4 179806024 179806278 -22522069 - L2 LINE L2 -1905 1409 1133 217 365 178 24 chr4 179806348 179807061 -22521286 - L2 LINE L2 -2363 951 129 418 318 95 5 chr4 179807113 179807324 -22521023 - L2 LINE L2 -74 3239 3010 * 438 308 61 20 chr4 179807311 179807509 -22520838 - L2 LINE L2 -439 2875 2670 684 296 135 33 chr4 179807525 179807706 -22520641 - L2 LINE L2 -772 2542 2381 1980 109 11 7 chr4 179807706 179808016 -22520331 - AluSq SINE Alu 0 315 5 684 296 135 33 chr4 179808016 179808292 -22520055 - L2 LINE L2 -933 2381 2036 27 0 0 0 chr4 179809531 179809558 -22518789 + AT_rich Low_complexity Low_complexity 1 27 0 24 53 0 0 chr4 179809650 179809688 -22518659 + AT_rich Low_complexity Low_complexity 1 38 0 7841 21 0 1 chr4 179809709 179811399 -22516948 - L1PA2 LINE L1 0 6155 4465 417 39 0 0 chr4 179811728 179811779 -22516568 + (TA)n Simple_repeat Simple_repeat 2 52 0 255 275 87 0 chr4 179812122 179812191 -22516156 + MER57-int LTR ERV1 1040 1114 -3822 433 272 60 13 chr4 179812209 179812421 -22515926 + MER57-int LTR ERV1 2934 4158 -1723 2327 240 62 66 chr4 179812429 179813658 -22514689 + MER57-int LTR ERV1 2645 5749 -1494 541 288 28 68 chr4 179813876 179814425 -22513922 + MER57-int LTR ERV1 2365 6058 -1479 1181 327 38 37 chr4 179815358 179815985 -22512362 + MER57-int LTR ERV1 6518 7145 -392 731 241 57 137 chr4 179815997 179816421 -22511926 + MER57A LTR ERV1 13 403 0 2170 117 0 0 chr4 179816972 179817272 -22511075 + AluSx SINE Alu 5 304 -8 362 309 129 6 chr4 179818457 179818635 -22509712 + L1MEc LINE L1 1539 1738 -4658 180 250 96 0 chr4 179820131 179820183 -22508164 - L2 LINE L2 -650 2664 2608 277 371 46 25 chr4 179820446 179820726 -22507621 - L2 LINE L2 0 3313 3028 21 0 0 0 chr4 179821586 179821607 -22506740 + AT_rich Low_complexity Low_complexity 1 21 0 31 58 0 0 chr4 179821814 179821866 -22506481 + AT_rich Low_complexity Low_complexity 1 52 0 907 289 138 34 chr4 179822800 179823367 -22504980 + L1MC4a LINE L1 5273 5898 -1910 3449 173 40 47 chr4 179823563 179824353 -22503994 + LTR1 LTR ERV1 1 785 0 708 270 68 53 chr4 179824587 179825047 -22503300 - HsTC2 DNA Tc2 -253 1645 1003 390 233 53 87 chr4 179825179 179825385 -22502962 - HsTC2 DNA Tc2 -1698 200 2 23 54 0 0 chr4 179825437 179825474 -22502873 + AT_rich Low_complexity Low_complexity 1 37 0 1748 144 12 3 chr4 179825583 179825962 -22502385 - L1PA13 LINE L1 -4383 2414 2022 26 64 0 0 chr4 179826342 179826389 -22501958 + AT_rich Low_complexity Low_complexity 1 47 0 259 254 0 15 chr4 179826414 179826481 -22501866 + CT-rich Low_complexity Low_complexity 3 68 0 21 0 0 0 chr4 179828784 179828805 -22499542 + AT_rich Low_complexity Low_complexity 1 21 0 791 205 210 11 chr4 179828861 179829214 -22499133 - Charlie1b DNA MER1_type 0 523 101 31 68 0 0 chr4 179831265 179831324 -22497023 + AT_rich Low_complexity Low_complexity 1 59 0 1107 278 94 12 chr4 179831384 179831808 -22496539 - L1ME1 LINE L1 -25 6141 5683 822 254 42 39 chr4 179831815 179832157 -22496190 - L1MDa LINE L1 -4491 2050 1401 29 0 0 0 chr4 179832621 179832650 -22495697 + AT_rich Low_complexity Low_complexity 1 29 0 266 304 0 22 chr4 179832857 179832949 -22495398 - L1MDa LINE L1 -5918 612 523 180 216 0 0 chr4 179833184 179833235 -22495112 + (TA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr4 179833987 179834008 -22494339 + AT_rich Low_complexity Low_complexity 1 21 0 1526 216 0 3 chr4 179834658 179834954 -22493393 - AluJo SINE Alu -17 295 1 26 0 0 0 chr4 179835552 179835578 -22492769 + AT_rich Low_complexity Low_complexity 1 26 0 183 156 0 0 chr4 179836263 179836295 -22492052 + GA-rich Low_complexity Low_complexity 1 32 0 7549 140 11 9 chr4 179837033 179837086 -22491261 + L1PA8A LINE L1 728 779 -6219 207 0 0 0 chr4 179837086 179837109 -22491238 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7549 140 11 9 chr4 179837109 179838258 -22490089 + L1PA8A LINE L1 779 2264 -4734 4583 206 6 17 chr4 179838304 179839363 -22488984 + L1PA8A LINE L1 2390 3436 -4148 7266 127 44 5 chr4 179839363 179841279 -22487068 + L1PA8A LINE L1 5593 7569 0 27 49 0 0 chr4 179841290 179841331 -22487016 + AT_rich Low_complexity Low_complexity 1 41 0 28 29 0 0 chr4 179841631 179841666 -22486681 + AT_rich Low_complexity Low_complexity 1 35 0 2350 314 89 27 chr4 179841718 179842876 -22485471 + L2 LINE L2 1127 2356 -958 1872 172 61 30 chr4 179842909 179843441 -22484906 - MLT2A2 LTR ERVL -8 546 1 932 318 75 20 chr4 179843441 179844085 -22484262 + L2 LINE L2 2623 3307 -6 27 29 0 0 chr4 179845090 179845124 -22483223 + AT_rich Low_complexity Low_complexity 1 34 0 1012 246 69 0 chr4 179845897 179846186 -22482161 - L1P3 LINE L1 -4792 1669 1361 5687 96 16 7 chr4 179846187 179847014 -22481333 + L1PA11 LINE L1 5341 6174 0 410 276 16 24 chr4 179847162 179847289 -22481058 + MIR SINE MIR 29 154 -108 6898 67 0 0 chr4 179847657 179848923 -22479424 - L1PA6 LINE L1 -4 6150 4883 26 50 0 0 chr4 179849041 179849081 -22479266 + AT_rich Low_complexity Low_complexity 1 40 0 296 146 49 8 chr4 179849359 179849366 -22478981 + (TA)n Simple_repeat Simple_repeat 1 6 -122 225 0 0 0 chr4 179849366 179849391 -22478956 + (CA)n Simple_repeat Simple_repeat 2 26 0 296 146 49 8 chr4 179849391 179849506 -22478841 + (TA)n Simple_repeat Simple_repeat 6 128 0 300 135 27 153 chr4 179849537 179849648 -22478699 + L1MCa LINE L1 2006 2102 -4324 816 256 31 0 chr4 179849667 179849858 -22478489 + MER58A DNA MER1_type 26 222 -2 253 191 0 0 chr4 179849975 179850022 -22478325 + MLT1G LTR MaLR 544 590 0 334 279 108 8 chr4 179850346 179850475 -22477872 + L1MC5 LINE L1 7815 7956 -5 333 299 37 19 chr4 179851058 179851165 -22477182 - L2 LINE L2 -285 3028 2920 1375 233 58 76 chr4 179853492 179853610 -22474737 + MLT1E3 LTR MaLR 1 120 -504 2169 130 37 6 chr4 179853610 179853963 -22474384 + THE1B LTR MaLR 1 364 0 9938 119 36 7 chr4 179853963 179855498 -22472849 + THE1B-int LTR MaLR 1 1580 0 2283 126 25 8 chr4 179855498 179855856 -22472491 + THE1B LTR MaLR 1 364 0 1375 233 58 76 chr4 179855856 179856321 -22472026 + MLT1E3 LTR MaLR 117 565 -59 22 56 0 0 chr4 179856321 179856357 -22471990 + AT_rich Low_complexity Low_complexity 1 36 0 253 286 0 0 chr4 179856631 179856694 -22471653 - L1MC/D LINE L1 -1951 5857 5795 409 303 84 7 chr4 179856874 179857088 -22471259 - L1MC/D LINE L1 -467 5654 5419 2113 194 50 4 chr4 179857368 179857828 -22470519 - L1MB2 LINE L1 -2 6169 5689 292 218 0 0 chr4 179857836 179857891 -22470456 + MLT1E3 LTR MaLR 598 652 -2 21 0 0 0 chr4 179858470 179858491 -22469856 + AT_rich Low_complexity Low_complexity 1 21 0 263 91 0 23 chr4 179858954 179858998 -22469349 + (CA)n Simple_repeat Simple_repeat 1 43 0 2153 96 0 10 chr4 179859603 179859906 -22468441 + AluSx SINE Alu 1 300 -12 235 284 233 18 chr4 179860780 179861055 -22467292 + L1ME3A LINE L1 4763 5096 -1050 1048 115 0 7 chr4 179861093 179861241 -22467106 + AluSg SINE Alu 1 147 -163 2051 120 3 3 chr4 179861289 179861581 -22466766 + AluSg SINE Alu 1 292 -18 1368 291 64 30 chr4 179861617 179862483 -22465864 + L1ME3A LINE L1 5173 6097 -73 2262 94 0 3 chr4 179862515 179862813 -22465534 - AluY SINE Alu -14 297 1 1716 179 76 52 chr4 179864524 179864932 -22463415 - L1MA9 LINE L1 -74 6238 5821 189 0 0 0 chr4 179864952 179864973 -22463374 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 396 59 0 0 chr4 179864972 179865023 -22463324 + (TA)n Simple_repeat Simple_repeat 2 52 0 340 280 120 48 chr4 179865447 179865697 -22462650 + L1ME3 LINE L1 4935 5202 -944 203 96 77 39 chr4 179865703 179865755 -22462592 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 239 241 13 0 chr4 179865778 179865857 -22462490 + L1ME3 LINE L1 5255 5334 -830 1070 315 68 14 chr4 179865914 179866412 -22461935 + MER90 LTR ERV1 45 569 -6 308 272 158 0 chr4 179866447 179866605 -22461742 + L1ME3 LINE L1 5373 5555 -607 329 259 46 8 chr4 179866606 179866623 -22461724 - L1MA10 LINE L1 0 6334 6318 2090 262 78 17 chr4 179866623 179867402 -22460945 - L1ME1 LINE L1 -9 6157 5331 1068 250 108 12 chr4 179867398 179867798 -22460549 + L1ME3 LINE L1 5725 6162 0 * 26 64 0 0 chr4 179867982 179868029 -22460318 + AT_rich Low_complexity Low_complexity 1 47 0 1872 52 0 4 chr4 179868794 179869023 -22459324 - AluY SINE Alu -13 298 71 27 49 0 0 chr4 179869110 179869151 -22459196 + AT_rich Low_complexity Low_complexity 1 41 0 374 294 41 42 chr4 179869820 179870030 -22458317 + MLT1H LTR MaLR 1 256 -293 346 272 82 7 chr4 179870124 179870271 -22458076 + MLT1H LTR MaLR 373 530 -37 635 343 139 36 chr4 179870424 179871001 -22457346 + L2 LINE L2 2113 2748 -566 1967 55 8 27 chr4 179871181 179871437 -22456910 + AluY SINE Alu 40 290 -21 25 75 0 0 chr4 179872876 179872929 -22455418 + AT_rich Low_complexity Low_complexity 1 53 0 552 330 71 39 chr4 179872962 179873298 -22455049 - L2 LINE L2 0 3313 2967 1139 312 118 15 chr4 179873441 179873977 -22454370 - L2 LINE L2 -568 2746 2156 29 28 0 0 chr4 179874006 179874042 -22454305 + AT_rich Low_complexity Low_complexity 1 36 0 1106 287 186 19 chr4 179874444 179874956 -22453391 + MLT2E LTR ERVL 32 628 0 1525 151 82 55 chr4 179875256 179875621 -22452726 + THE1C LTR MaLR 1 375 0 1538 204 40 38 chr4 179877707 179878080 -22450267 - MLT1A2 LTR MaLR 0 374 1 1092 196 0 0 chr4 179878398 179878587 -22449760 + AluJo SINE Alu 102 290 -22 376 300 82 53 chr4 179879135 179879305 -22449042 + MIR SINE MIR 12 186 -76 353 281 112 69 chr4 179879796 179880316 -22448031 + HAL1b LINE L1 114 655 -693 1525 254 83 52 chr4 179880670 179881431 -22446916 + L1MC5 LINE L1 6554 7338 -623 386 221 43 6 chr4 179882023 179882186 -22446161 + (TA)n Simple_repeat Simple_repeat 1 169 0 291 28 0 0 chr4 179882269 179882305 -22446042 + (CA)n Simple_repeat Simple_repeat 1 36 0 1542 158 97 19 chr4 179882486 179882797 -22445550 + MER44D DNA MER2_type 2 606 -3 191 221 118 59 chr4 179883683 179883751 -22444596 + L2 LINE L2 3210 3281 -32 21 82 0 0 chr4 179884566 179884615 -22443732 + AT_rich Low_complexity Low_complexity 1 49 0 236 336 30 8 chr4 179885405 179885536 -22442811 - L2 LINE L2 -1609 1705 1572 25 31 0 0 chr4 179886117 179886149 -22442198 + AT_rich Low_complexity Low_complexity 1 32 0 1995 254 118 42 chr4 179886368 179886528 -22441819 + L1MB7 LINE L1 5254 5400 -784 189 0 0 0 chr4 179886528 179886549 -22441798 + (CAT)n Simple_repeat Simple_repeat 2 22 0 1995 254 118 42 chr4 179886549 179887241 -22441106 + L1MB7 LINE L1 5400 6171 -13 25 0 0 0 chr4 179887616 179887641 -22440706 + AT_rich Low_complexity Low_complexity 1 25 0 246 179 18 0 chr4 179887931 179887987 -22440360 + (TA)n Simple_repeat Simple_repeat 2 58 0 586 206 62 115 chr4 179888352 179888726 -22439621 + L1M4 LINE L1 4179 4532 -1614 605 374 69 14 chr4 179888909 179889415 -22438932 - ERVL LTR ERVL -3739 2025 1492 582 251 123 0 chr4 179889520 179889707 -22438640 - MER58C DNA MER1_type -5 210 1 23 0 0 0 chr4 179890568 179890591 -22437756 + AT_rich Low_complexity Low_complexity 1 23 0 70 41 0 0 chr4 179891590 179891688 -22436659 + AT_rich Low_complexity Low_complexity 1 98 0 345 190 34 39 chr4 179891704 179891883 -22436464 + (TA)n Simple_repeat Simple_repeat 2 179 0 1858 164 21 0 chr4 179892755 179893042 -22435305 - AluSg SINE Alu -17 293 1 1645 323 39 5 chr4 179893179 179893918 -22434429 + L1ME3A LINE L1 5373 6136 -34 230 296 0 0 chr4 179893956 179894010 -22434337 - L2 LINE L2 0 3272 3219 2213 106 0 3 chr4 179894014 179894317 -22434030 + AluSg SINE Alu 1 302 -8 185 271 21 0 chr4 179894391 179894439 -22433908 - L2 LINE L2 -2 3311 3263 302 387 21 5 chr4 179894715 179894906 -22433441 - L2 LINE L2 -419 2895 2702 810 216 11 11 chr4 179894947 179895128 -22433219 - MER58A DNA MER1_type -1 223 43 512 169 25 0 chr4 179895819 179895937 -22432410 + L1MA7 LINE L1 6170 6290 -1 635 193 100 20 chr4 179897019 179897169 -22431178 - MER89 LTR ERV1 -1 558 397 443 256 57 98 chr4 179897177 179897423 -22430924 - MER89-int LTR ERV1 -753 6048 5813 288 113 189 0 chr4 179897521 179897574 -22430773 - MER89-int LTR ERV1 -1026 5775 5713 876 203 64 77 chr4 179897574 179897885 -22430462 - MLT1D LTR MaLR -198 307 1 2412 216 50 104 chr4 179897885 179898848 -22429499 - MER89-int LTR ERV1 -4528 2273 1363 882 265 57 57 chr4 179898918 179899254 -22429093 - MER89-int LTR ERV1 -6456 345 10 934 280 100 0 chr4 179899264 179899575 -22428772 - MER89 LTR ERV1 0 559 218 444 328 22 26 chr4 179899604 179899833 -22428514 - ERVL LTR ERVL -3291 2473 2246 529 300 8 3 chr4 179902061 179902265 -22426082 + L1MC4a LINE L1 6446 6614 -1194 1666 254 111 0 chr4 179902284 179902832 -22425515 + L1MC4 LINE L1 7070 7678 -364 209 289 0 0 chr4 179902925 179902977 -22425370 + (CATATA)n Simple_repeat Simple_repeat 1 52 0 1103 170 43 17 chr4 179903057 179903287 -22425060 + LTR39 LTR ERV1 1 236 -547 542 204 58 29 chr4 179904208 179904345 -22424002 + FLAM_C SINE Alu 3 143 0 22 70 0 0 chr4 179906163 179906206 -22422141 + AT_rich Low_complexity Low_complexity 1 43 0 254 281 12 0 chr4 179906700 179906782 -22421565 + (TA)n Simple_repeat Simple_repeat 1 83 0 2040 122 3 10 chr4 179907532 179907844 -22420503 + AluSx SINE Alu 2 311 -1 292 376 25 25 chr4 179908372 179908529 -22419818 - L3 LINE CR1 -54 1523 1367 397 236 8 71 chr4 179908579 179908706 -22419641 - L2 LINE L2 -56 3257 3139 347 368 65 58 chr4 179909425 179909996 -22418351 - L1MEd LINE L1 -5540 579 5 219 69 0 0 chr4 179910217 179910246 -22418101 + (CAAAC)n Simple_repeat Simple_repeat 4 32 0 328 362 82 33 chr4 179910440 179910769 -22417578 - L3 LINE CR1 -265 1312 968 25 75 0 0 chr4 179910818 179910871 -22417476 + AT_rich Low_complexity Low_complexity 1 53 0 1631 215 17 17 chr4 179911225 179911583 -22416764 + MLT1A1 LTR MaLR 6 363 -2 189 74 0 0 chr4 179911857 179911884 -22416463 + (A)n Simple_repeat Simple_repeat 1 27 0 2259 143 11 3 chr4 179913983 179914340 -22414007 - L1PB1 LINE L1 -7 6144 5785 3214 144 14 17 chr4 179914341 179915040 -22413307 - L1PB1 LINE L1 -422 5729 5032 574 252 55 74 chr4 179915019 179915436 -22412911 - L1MCc LINE L1 -2958 3983 3575 * 1386 251 119 37 chr4 179915457 179915766 -22412581 - L1MCc LINE L1 -4335 2787 2505 255 60 60 0 chr4 179915766 179915816 -22412531 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 1386 251 119 37 chr4 179915816 179916934 -22411413 - L1MCc LINE L1 -4617 2505 1047 448 253 44 13 chr4 179916989 179917147 -22411200 - L1MCc LINE L1 -5464 959 797 792 286 98 43 chr4 179917223 179917762 -22410585 - L1MCc LINE L1 -5842 581 13 624 358 100 32 chr4 179919794 179920294 -22408053 + L2 LINE L2 165 698 -2616 188 289 60 12 chr4 179920293 179920376 -22407971 + L3 LINE CR1 624 710 -867 * 763 347 105 24 chr4 179920673 179921413 -22406934 + L2 LINE L2 727 1526 -1788 329 94 19 0 chr4 179921414 179921467 -22406880 + Alu SINE Alu 247 300 0 259 307 154 50 chr4 179921478 179921758 -22406589 + L2 LINE L2 1560 1868 -1446 792 350 68 8 chr4 179921834 179922203 -22406144 + L2 LINE L2 2175 2565 -749 275 273 31 12 chr4 179922574 179922735 -22405612 + (TA)n Simple_repeat Simple_repeat 2 165 0 857 261 157 34 chr4 179922736 179923149 -22405198 + L1MC4 LINE L1 6805 7268 -774 763 319 97 17 chr4 179923242 179923646 -22404701 + L1MC4 LINE L1 7469 7904 -138 375 181 53 43 chr4 179924795 179924889 -22403458 + MIR SINE MIR 119 213 -49 7085 23 0 0 chr4 179925231 179926057 -22402290 + L1PA4 LINE L1 5330 6155 0 256 301 36 0 chr4 179926285 179926368 -22401979 - L3 LINE CR1 -882 695 610 300 293 22 1 chr4 179926974 179927076 -22401271 - MIR SINE MIR -66 142 40 293 333 44 44 chr4 179927325 179927484 -22400863 + LTR16C LTR ERVL 88 246 -245 351 269 84 24 chr4 179927928 179928095 -22400252 - L1M4 LINE L1 -2932 3214 3038 37 23 0 0 chr4 179928581 179928625 -22399722 + AT_rich Low_complexity Low_complexity 1 44 0 194 250 21 0 chr4 179929685 179929733 -22398614 + L2 LINE L2 2282 2330 -984 1473 115 32 0 chr4 179929911 179930128 -22398219 - MER30 DNA MER1_type 0 230 7 183 129 0 0 chr4 179931370 179931401 -22396946 + (TG)n Simple_repeat Simple_repeat 1 31 0 21 36 0 0 chr4 179932241 179932269 -22396078 + AT_rich Low_complexity Low_complexity 1 28 0 3969 139 10 8 chr4 179932592 179933263 -22395084 - L1PA11 LINE L1 -1419 4727 4055 6205 110 10 0 chr4 179933270 179934718 -22393629 + L1PA11 LINE L1 4718 6174 0 183 371 112 9 chr4 179935790 179935906 -22392441 - L2 LINE L2 -534 2780 2653 493 313 49 29 chr4 179937177 179937420 -22390927 - MIR SINE MIR -13 249 2 611 128 0 0 chr4 179937732 179937826 -22390521 - AluSc SINE Alu -178 131 38 1883 208 60 5 chr4 179938627 179939007 -22389340 - MER54A LTR ERVL -493 408 8 21 0 0 0 chr4 179939190 179939211 -22389136 + AT_rich Low_complexity Low_complexity 1 21 0 416 298 61 59 chr4 179940598 179940919 -22387428 + L1MEd LINE L1 691 1015 -5104 2234 106 0 6 chr4 179940919 179941230 -22387117 + AluSg1 SINE Alu 1 309 0 416 298 61 59 chr4 179941230 179941469 -22386878 + L1MEd LINE L1 1015 1252 -4867 256 305 116 0 chr4 179942560 179942655 -22385692 + MIR SINE MIR 26 131 -131 25 0 0 0 chr4 179942921 179942946 -22385401 + AT_rich Low_complexity Low_complexity 1 25 0 900 285 9 0 chr4 179942987 179943208 -22385139 - MER58A DNA MER1_type 0 224 2 996 263 98 57 chr4 179943397 179943551 -22384796 + HsTC2a DNA Tc2 3 149 -1751 1778 175 76 15 chr4 179943551 179943894 -22384453 - THE1B LTR MaLR 0 364 1 11680 92 2 3 chr4 179943894 179945476 -22382871 - THE1B-int LTR MaLR 0 1580 1 1858 143 77 40 chr4 179945477 179945827 -22382520 - THE1B LTR MaLR -1 363 1 996 263 98 57 chr4 179945827 179946212 -22382135 + HsTC2a DNA Tc2 148 566 -178 274 263 38 0 chr4 179946347 179946427 -22381920 + L1MEd LINE L1 2472 2554 -3575 24 32 0 0 chr4 179946618 179946649 -22381698 + AT_rich Low_complexity Low_complexity 1 31 0 423 285 120 79 chr4 179946687 179947343 -22381004 + L1MEd LINE L1 2884 3566 -2563 25 75 0 0 chr4 179947522 179947575 -22380772 + AT_rich Low_complexity Low_complexity 1 53 0 28 0 0 0 chr4 179948069 179948097 -22380250 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 179948160 179948188 -22380159 + AT_rich Low_complexity Low_complexity 1 28 0 1519 186 111 36 chr4 179948188 179948657 -22379690 - L1MA8 LINE L1 -3 6288 5785 326 203 0 0 chr4 179948660 179948724 -22379623 + L1 LINE L1 3492 3555 -2591 1810 228 25 4 chr4 179948728 179949255 -22379092 - L1 LINE L1 -2647 3499 2962 21 0 0 0 chr4 179949466 179949487 -22378860 + AT_rich Low_complexity Low_complexity 1 21 0 424 332 86 16 chr4 179949534 179949778 -22378569 - L1MC4 LINE L1 -1004 7038 6778 31 44 0 0 chr4 179950058 179950103 -22378244 + AT_rich Low_complexity Low_complexity 1 45 0 248 187 22 22 chr4 179950233 179950324 -22378023 + (TA)n Simple_repeat Simple_repeat 1 91 0 258 266 0 0 chr4 179950339 179950403 -22377944 - L1MC4 LINE L1 -1913 5895 5832 23 68 0 0 chr4 179950535 179950579 -22377768 + AT_rich Low_complexity Low_complexity 1 44 0 233 228 0 0 chr4 179951448 179951505 -22376842 + T-rich Low_complexity Low_complexity 2 58 0 316 310 155 23 chr4 179952283 179952457 -22375890 - MIR SINE MIR -1 261 65 2059 121 0 0 chr4 179952463 179952775 -22375572 - AluSg SINE Alu 0 312 1 24 53 0 0 chr4 179953136 179953174 -22375173 + AT_rich Low_complexity Low_complexity 1 38 0 2188 112 0 3 chr4 179953845 179954159 -22374188 + AluSp SINE Alu 1 313 0 213 300 88 0 chr4 179954738 179954818 -22373529 - MIR SINE MIR -81 181 95 1352 310 69 29 chr4 179954818 179955444 -22372903 + MLT2F LTR ERVL 1 651 -12 2600 89 86 29 chr4 179956496 179956871 -22371476 + MLT2A1 LTR ERVL 3 406 -38 208 0 62 0 chr4 179956871 179956903 -22371444 + (TA)n Simple_repeat Simple_repeat 2 35 0 2600 89 86 29 chr4 179956903 179956944 -22371403 + MLT2A1 LTR ERVL 406 443 -1 1566 165 4 0 chr4 179957325 179957574 -22370773 - AluSx SINE Alu -16 296 47 377 278 0 0 chr4 179957771 179957868 -22370479 + MLT1J LTR MaLR 69 165 -346 1192 309 40 8 chr4 179959649 179960002 -22368345 + L1MD2 LINE L1 143 506 -6037 * 2323 255 67 32 chr4 179960000 179960783 -22367564 + L1MD2 LINE L1 2472 3307 -3233 2174 92 0 22 chr4 179960783 179961097 -22367250 - AluSq SINE Alu -6 307 1 2323 255 67 32 chr4 179961097 179961419 -22366928 + L1MD2 LINE L1 3307 3616 -2924 1502 180 11 0 chr4 179961418 179961461 -22366886 - L1PB4 LINE L1 -93 6063 6021 * 2027 157 100 91 chr4 179961461 179961756 -22366591 - L1MA3 LINE L1 -278 6027 5736 1637 107 0 4 chr4 179961756 179961998 -22366349 - L1PA7 LINE L1 -4 6150 5910 2027 157 100 91 chr4 179961998 179962010 -22366337 - L1MA3 LINE L1 -569 5736 5726 267 103 0 0 chr4 179962010 179962049 -22366298 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 2027 157 100 91 chr4 179962049 179962452 -22365895 - L1MA3 LINE L1 -579 5726 5369 811 261 63 53 chr4 179962449 179963071 -22365276 + L1MD2 LINE L1 5216 5833 -745 * 343 245 31 50 chr4 179963169 179963328 -22365019 - L1MD1 LINE L1 -187 6055 5900 2269 269 45 17 chr4 179963343 179964060 -22364287 + L1MD2 LINE L1 5821 6557 -196 341 299 0 0 chr4 179964063 179964150 -22364197 - L1MC4 LINE L1 -1339 6703 6617 482 92 26 0 chr4 179964161 179964237 -22364110 + (CATATA)n Simple_repeat Simple_repeat 2 79 0 588 279 12 80 chr4 179964237 179964488 -22363859 + L1MD2 LINE L1 6102 6335 -24 234 0 0 0 chr4 179964606 179964632 -22363715 + (CAG)n Simple_repeat Simple_repeat 3 28 0 249 216 11 34 chr4 179964836 179964924 -22363423 + (TA)n Simple_repeat Simple_repeat 2 87 0 548 14 14 0 chr4 179966237 179966306 -22362041 + (GA)n Simple_repeat Simple_repeat 1 70 0 1964 50 8 23 chr4 179966641 179966903 -22361444 - AluY SINE Alu -13 298 41 545 271 87 77 chr4 179968888 179969357 -22358990 + L1ME3A LINE L1 5686 6159 -11 21 0 0 0 chr4 179970139 179970160 -22358187 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 179970686 179970714 -22357633 + AT_rich Low_complexity Low_complexity 1 28 0 5230 240 54 37 chr4 179970984 179971736 -22356611 - L1MC3 LINE L1 0 7995 7258 186 118 0 0 chr4 179971736 179971770 -22356577 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 5230 240 54 37 chr4 179971770 179972141 -22356206 - L1MC3 LINE L1 -737 7258 6895 1698 99 111 4 chr4 179972141 179972403 -22355944 + AluY SINE Alu 3 292 -19 5230 240 54 37 chr4 179972403 179973711 -22354636 - L1MC3 LINE L1 -1100 6895 5520 30 0 0 0 chr4 179974064 179974094 -22354253 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr4 179974422 179974456 -22353891 + AT_rich Low_complexity Low_complexity 1 34 0 1388 302 32 3 chr4 179975074 179975664 -22352683 - L1ME1 LINE L1 -189 5977 5371 712 282 59 14 chr4 179975711 179976054 -22352293 - L1ME1 LINE L1 -854 5292 4935 294 230 0 122 chr4 179976594 179976733 -22351614 - L2 LINE L2 -76 3237 3116 24 0 0 0 chr4 179976915 179976939 -22351408 + AT_rich Low_complexity Low_complexity 1 24 0 1286 169 50 0 chr4 179977954 179978173 -22350174 + MER30 DNA MER1_type 1 230 0 2382 260 33 31 chr4 179978884 179979062 -22349285 + L1 LINE L1 2044 2220 -5345 2822 107 34 11 chr4 179979062 179979509 -22348838 + L1PA13 LINE L1 5705 6161 -2 2382 260 33 31 chr4 179979509 179980565 -22347782 + L1 LINE L1 2220 3268 -4297 3363 190 53 28 chr4 179980573 179980865 -22347482 + L1MA7 LINE L1 5494 5777 -514 330 67 0 0 chr4 179980865 179980910 -22347437 + (CA)n Simple_repeat Simple_repeat 2 46 0 3363 190 53 28 chr4 179980910 179981396 -22346951 + L1MA7 LINE L1 5777 6291 0 1531 206 3 7 chr4 179981494 179981781 -22346566 - AluJo SINE Alu -26 286 1 2261 128 55 0 chr4 179983100 179983445 -22344902 + THE1B LTR MaLR 1 364 0 740 180 15 149 chr4 179983700 179983961 -22344386 + L1 LINE L1 5263 5488 -2077 2626 20 3 0 chr4 179986031 179986329 -22342018 + AluY SINE Alu 1 299 -12 22 0 0 0 chr4 179986481 179986503 -22341844 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 179986924 179986945 -22341402 + AT_rich Low_complexity Low_complexity 1 21 0 2497 191 40 111 chr4 179988515 179988620 -22339727 - L1MA9 LINE L1 -40 6272 6161 210 71 0 0 chr4 179988620 179988648 -22339699 + (TG)n Simple_repeat Simple_repeat 1 28 0 2497 191 40 111 chr4 179988648 179989131 -22339216 - L1MA9 LINE L1 -151 6161 5758 1568 128 23 72 chr4 179989131 179989436 -22338911 + AluJb SINE Alu 6 295 -17 2497 191 40 111 chr4 179989436 179989678 -22338669 - L1MA9 LINE L1 -554 5758 5500 * 2913 259 49 32 chr4 179989674 179990447 -22337900 - L1M3de LINE L1 -5292 1361 576 294 302 126 13 chr4 179990433 179990592 -22337755 - L1M3d LINE L1 -5625 266 90 * 3617 207 37 28 chr4 179990624 179990682 -22337665 - L1MA9 LINE L1 -816 5330 5274 234 0 0 0 chr4 179990682 179990708 -22337639 + (TA)n Simple_repeat Simple_repeat 2 27 0 2534 30 40 0 chr4 179990711 179991010 -22337337 - AluY SINE Alu 0 311 1 3617 207 37 28 chr4 179991010 179991915 -22336432 - L1MA9 LINE L1 -873 5273 4354 2568 93 6 0 chr4 179991915 179992279 -22336068 - L1PB1 LINE L1 -4 6863 6498 209 159 23 0 chr4 179992279 179992323 -22336024 + (TA)n Simple_repeat Simple_repeat 1 45 0 322 47 0 0 chr4 179992346 179992389 -22335958 - L1PB1 LINE L1 -360 6507 6465 3455 158 10 8 chr4 179992397 179993484 -22334863 - L1PB1 LINE L1 -380 6487 5397 2156 132 0 3 chr4 179993491 179993795 -22334552 - AluSg SINE Alu -2 308 6 4302 216 7 16 chr4 179993810 179993993 -22334354 + L1 LINE L1 3328 3511 -2635 1598 158 70 14 chr4 179993993 179994277 -22334070 + AluSg SINE Alu 1 300 -10 4302 216 7 16 chr4 179994277 179995121 -22333226 + L1 LINE L1 3511 4345 -1801 9471 145 34 19 chr4 179995121 179995384 -22332963 - L1PB1 LINE L1 -3468 3394 3136 2094 138 3 0 chr4 179995384 179995688 -22332659 - AluSx SINE Alu -7 305 1 9471 145 34 19 chr4 179995688 179997604 -22330743 - L1PB1 LINE L1 -3726 3136 971 2385 73 0 22 chr4 179997604 179997918 -22330429 + AluY SINE Alu 1 307 -4 9471 145 34 19 chr4 179997918 179998162 -22330185 - L1PB1 LINE L1 -5891 971 732 1117 180 0 0 chr4 179998246 179998446 -22329901 - L1PB1 LINE L1 -6663 200 1 5234 214 84 16 chr4 179998446 179999996 -22328351 - L1 LINE L1 -1763 4383 2729 1664 198 100 49 chr4 180000430 180000880 -22327467 - L1MB4 LINE L1 -2 6178 5752 1199 206 92 40 chr4 180000880 180001206 -22327141 - MER2 DNA MER2_type 0 344 2 1664 198 100 49 chr4 180001206 180001451 -22326896 - L1MB4 LINE L1 -428 5752 5521 2414 59 0 23 chr4 180001451 180001755 -22326592 - AluY SINE Alu -14 297 1 1664 198 100 49 chr4 180001755 180001877 -22326470 - L1MB4 LINE L1 -659 5521 5407 2138 123 0 0 chr4 180001877 180002187 -22326160 + AluY SINE Alu 1 310 -1 1664 198 100 49 chr4 180002187 180002209 -22326138 - L1MB4 LINE L1 -773 5407 5288 255 61 0 0 chr4 180003781 180003814 -22324533 + (TCC)n Simple_repeat Simple_repeat 3 35 0 1752 125 3 57 chr4 180003814 180004110 -22324237 - AluSx SINE Alu -32 280 1 13043 238 21 13 chr4 180004163 180009523 -22318824 - L1PA16 LINE L1 -7 7597 2182 207 0 0 0 chr4 180009606 180009629 -22318718 + (TTG)n Simple_repeat Simple_repeat 2 24 0 253 384 20 7 chr4 180009815 180009961 -22318386 - L1PA16 LINE L1 -5276 2298 2151 807 293 151 43 chr4 180010011 180010540 -22317807 - L1PA16 LINE L1 -6200 1374 789 289 193 17 34 chr4 180010563 180010682 -22317665 + CT-rich Low_complexity Low_complexity 4 120 0 667 350 62 21 chr4 180011176 180011742 -22316605 - ERVL LTR ERVL -1790 3974 3386 404 194 0 32 chr4 180011938 180012031 -22316316 - L1PA15-16 LINE L1 -4545 2304 2215 4404 167 61 0 chr4 180012036 180012900 -22315447 + L1PB4 LINE L1 5235 6150 -6 1264 355 60 36 chr4 180013039 180014263 -22314084 - ERVL LTR ERVL -2660 3104 1852 212 257 26 9 chr4 180014378 180014491 -22313856 + (TGGG)n Simple_repeat Simple_repeat 2 116 0 654 216 0 0 chr4 180014492 180014789 -22313558 + G-rich Low_complexity Low_complexity 1 297 0 1265 206 105 41 chr4 180014919 180015263 -22313084 + MLT2D LTR ERVL 1 366 -48 246 148 66 33 chr4 180015290 180015351 -22312996 + MLT2D LTR ERVL 456 518 -2 271 394 6 11 chr4 180015468 180015648 -22312699 - ERVL LTR ERVL -3735 1261 1083 21 36 0 0 chr4 180015705 180015733 -22312614 + AT_rich Low_complexity Low_complexity 1 28 0 294 351 42 39 chr4 180016114 180016373 -22311974 - ERVL LTR ERVL -4375 621 362 435 250 8 39 chr4 180016701 180016829 -22311518 - LTR16C LTR ERVL -8 483 360 644 227 74 6 chr4 180017084 180017260 -22311087 + MLT1C LTR MaLR 37 224 -243 282 152 22 0 chr4 180017261 180017307 -22311040 + MLT1C LTR MaLR 420 466 -1 1670 250 111 121 chr4 180017824 180018428 -22309919 + MLT1E2 LTR MaLR 57 626 0 438 315 53 4 chr4 180018761 180018965 -22309382 + MLT1I LTR MaLR 1 219 -227 2139 104 0 32 chr4 180019468 180019776 -22308571 + AluSg SINE Alu 1 298 -12 2279 108 0 0 chr4 180019784 180020089 -22308258 + AluSx SINE Alu 1 305 -7 21 82 0 0 chr4 180020563 180020612 -22307735 + AT_rich Low_complexity Low_complexity 1 49 0 26 50 0 0 chr4 180021375 180021415 -22306932 + AT_rich Low_complexity Low_complexity 1 40 0 212 294 133 56 chr4 180021664 180021807 -22306540 - MER5A DNA MER1_type 0 189 36 7805 220 26 10 chr4 180021968 180024714 -22303633 - L1PB4 LINE L1 -4 6152 3362 1171 280 69 10 chr4 180025409 180026020 -22302327 - L1MEc LINE L1 -4110 2286 1640 30 0 0 0 chr4 180026081 180026111 -22302236 + AT_rich Low_complexity Low_complexity 1 30 0 1369 148 15 27 chr4 180026237 180026500 -22301847 + Tigger7 DNA MER2_type 2231 2490 -1 4660 254 90 29 chr4 180026544 180028197 -22300150 + L1MDa LINE L1 499 2270 -4270 1515 163 12 8 chr4 180028197 180028455 -22299892 - AluSx SINE Alu -11 301 43 4660 254 90 29 chr4 180028455 180028574 -22299773 + L1MDa LINE L1 2270 2380 -4160 391 316 53 12 chr4 180028581 180028752 -22299595 + L1MD2 LINE L1 5966 6143 -216 366 228 21 43 chr4 180028888 180029035 -22299312 - MER45 DNA AcHobo -15 1566 1413 22 35 0 0 chr4 180029037 180029066 -22299281 + AT_rich Low_complexity Low_complexity 1 29 0 283 211 0 0 chr4 180029066 180029118 -22299229 - FLAM_A SINE Alu -3 130 79 * 1454 161 44 50 chr4 180029113 180029264 -22299083 + MSTB LTR MaLR 131 281 -145 1651 178 45 10 chr4 180029264 180029556 -22298791 + AluSx SINE Alu 1 302 -10 1454 161 44 50 chr4 180029556 180029702 -22298645 + MSTB LTR MaLR 281 426 0 5956 198 82 11 chr4 180029704 180030908 -22297439 + MSTB-int LTR MaLR 3 1292 -359 1825 189 79 8 chr4 180030908 180031289 -22297058 - MSTB LTR MaLR 0 426 19 1696 190 52 3 chr4 180031304 180031651 -22296696 + MSTB-int LTR MaLR 1288 1651 0 2219 199 9 9 chr4 180031651 180032077 -22296270 + MSTB LTR MaLR 1 426 0 201 147 0 0 chr4 180033986 180034020 -22294327 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 204 125 0 0 chr4 180034424 180034456 -22293891 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 39 60 0 0 chr4 180035019 180035086 -22293261 + AT_rich Low_complexity Low_complexity 1 67 0 216 200 0 0 chr4 180035798 180035848 -22292499 + (TATG)n Simple_repeat Simple_repeat 4 53 0 245 255 0 43 chr4 180035856 180035950 -22292397 - L1MC4 LINE L1 -1339 6703 6614 308 226 0 12 chr4 180035950 180036034 -22292313 + (TA)n Simple_repeat Simple_repeat 2 84 0 256 300 0 0 chr4 180036037 180036127 -22292220 - L1MC4 LINE L1 -1339 6703 6614 233 275 0 22 chr4 180036048 180036139 -22292208 + L1MC4 LINE L1 6615 6703 -1339 * 1335 199 0 0 chr4 180036856 180037087 -22291260 + AluJb SINE Alu 1 231 -81 260 350 133 30 chr4 180037255 180037458 -22290889 - MIR SINE MIR -21 241 18 22 0 0 0 chr4 180037509 180037531 -22290816 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr4 180037910 180037942 -22290405 + AT_rich Low_complexity Low_complexity 1 32 0 321 211 20 20 chr4 180038142 180038294 -22290053 + (TA)n Simple_repeat Simple_repeat 1 152 0 204 236 0 18 chr4 180038350 180038405 -22289942 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 342 345 36 45 chr4 180038412 180038632 -22289715 - L1MEd LINE L1 -5351 768 551 3699 109 11 4 chr4 180038952 180039502 -22288845 + MER41A LTR ERV1 1 554 0 971 220 5 0 chr4 180039972 180040163 -22288184 - MER6B DNA MER2_type -18 192 1 30 45 0 0 chr4 180040392 180040436 -22287911 + AT_rich Low_complexity Low_complexity 1 44 0 1975 114 17 67 chr4 180040499 180040860 -22287487 + L1PA11 LINE L1 5830 6172 -2 192 125 0 0 chr4 180041195 180041227 -22287120 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2288 94 0 0 chr4 180041706 180042005 -22286342 + AluSg SINE Alu 12 310 0 575 293 107 0 chr4 180042045 180042270 -22286077 + MIR SINE MIR 2 250 -12 1485 210 36 44 chr4 180043550 180043940 -22284407 - MLT1B LTR MaLR 0 390 4 209 128 26 0 chr4 180044546 180044585 -22283762 + A-rich Low_complexity Low_complexity 3 42 0 390 271 42 25 chr4 180044644 180044762 -22283585 - L2 LINE L2 -1 3312 3193 22 0 0 0 chr4 180046112 180046134 -22282213 + AT_rich Low_complexity Low_complexity 1 22 0 11033 76 50 2 chr4 180046777 180049022 -22279325 + L1PA6 LINE L1 3851 6150 -4 1443 74 0 16 chr4 180049057 180049247 -22279100 + AluY SINE Alu 1 187 -124 1315 296 64 44 chr4 180049296 180049907 -22278440 - HERVL40 LTR ERVL -3913 1617 995 482 340 94 34 chr4 180050040 180050305 -22278042 + LTR33 LTR ERVL 4 284 -237 271 311 200 3 chr4 180050477 180050670 -22277677 - MIR SINE MIR -25 237 26 2164 164 51 5 chr4 180051730 180052139 -22276208 + MSTA LTR MaLR 1 428 0 180 245 41 20 chr4 180052218 180052267 -22276080 + L2 LINE L2 2922 2971 -343 370 385 99 22 chr4 180053198 180053642 -22274705 - L2 LINE L2 -346 2968 2491 2167 155 27 67 chr4 180053874 180054320 -22274027 + MSTA LTR MaLR 1 428 0 193 353 24 0 chr4 180054922 180055007 -22273340 - MIR SINE MIR -89 173 87 1975 97 10 17 chr4 180055007 180055339 -22273008 + AluSp SINE Alu 1 313 0 2151 113 0 3 chr4 180055580 180055880 -22272467 - AluSc SINE Alu -10 299 1 846 293 151 2 chr4 180056862 180057398 -22270949 - L1M4 LINE L1 -2559 3587 2972 204 118 29 0 chr4 180057629 180057663 -22270684 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr4 180060846 180060874 -22267473 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 180060894 180060922 -22267425 + AT_rich Low_complexity Low_complexity 1 28 0 4393 122 141 43 chr4 180061314 180062769 -22265578 + pTR5 LTR ERV1 738 2438 0 315 329 27 7 chr4 180062784 180062930 -22265417 + MLT1J LTR MaLR 68 216 -295 1999 209 98 15 chr4 180063562 180064518 -22263829 - L1MCa LINE L1 -4756 1808 736 453 271 0 8 chr4 180064524 180064646 -22263701 - L1MCa LINE L1 -5355 690 570 1024 289 67 85 chr4 180064790 180065403 -22262944 - L1MCa LINE L1 -5485 685 41 456 316 56 30 chr4 180066564 180066833 -22261514 + L1MC4 LINE L1 6728 7003 -1039 1198 249 65 52 chr4 180066986 180067524 -22260823 + L1MC5 LINE L1 6972 7516 -445 320 286 94 64 chr4 180067619 180067822 -22260525 + L1ME3A LINE L1 5962 6170 0 631 185 33 13 chr4 180068801 180068952 -22259395 + L1MA10 LINE L1 6180 6333 -1 29 70 0 0 chr4 180069040 180069097 -22259250 + AT_rich Low_complexity Low_complexity 1 57 0 209 350 30 0 chr4 180069494 180069594 -22258753 - L2 LINE L2 -1300 2014 1912 299 271 60 38 chr4 180070005 180070138 -22258209 + L1MEc LINE L1 29 164 -6232 3244 134 2 2 chr4 180070399 180070900 -22257447 - L1PA15 LINE L1 -205 5960 5460 1223 133 0 15 chr4 180070900 180071103 -22257244 + L1PA15 LINE L1 5962 6161 -4 498 233 26 0 chr4 180071308 180071325 -22257022 + LTR57-int LTR ERVL 310 428 -4915 555 162 0 10 chr4 180071325 180071424 -22256923 + MER84-int LTR ERV1 814 911 -875 395 79 32 0 chr4 180071430 180071493 -22256854 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 349 195 0 13 chr4 180071527 180071604 -22256743 + MER84-int LTR ERV1 927 1002 -3869 * 350 209 24 21 chr4 180071535 180071762 -22256585 + LTR57-int LTR ERVL 485 813 -4530 * 2770 197 41 69 chr4 180071761 180071899 -22256448 + MER84-int LTR ERV1 885 1025 -5306 2531 114 5 11 chr4 180071899 180072276 -22256071 - THE1C LTR MaLR 0 375 1 2770 197 41 69 chr4 180072276 180073421 -22254926 + MER84-int LTR ERV1 1025 3853 -2478 643 211 25 45 chr4 180073507 180073706 -22254641 + MER84-int LTR ERV1 3536 3730 -2868 1231 245 69 57 chr4 180073770 180074525 -22253822 + MER84-int LTR ERV1 2468 4500 -1831 5942 156 50 10 chr4 180074678 180075816 -22252531 + MER84-int LTR ERV1 2746 5705 -626 301 330 0 0 chr4 180076409 180076568 -22251779 + MER84-int LTR ERV1 4274 8410 -509 323 23 23 0 chr4 180077073 180077117 -22251230 + (CAA)n Simple_repeat Simple_repeat 2 46 0 494 242 46 46 chr4 180077366 180077560 -22250787 + LTR45B LTR ERV1 296 489 0 235 348 14 7 chr4 180077561 180077699 -22250648 + L1MEc LINE L1 541 679 -5717 892 262 111 40 chr4 180077701 180078404 -22249943 + L1MEc LINE L1 908 1660 -4736 239 154 0 0 chr4 180078413 180078452 -22249895 + MLT1B LTR MaLR 350 388 -2 27 0 0 0 chr4 180078938 180078965 -22249382 + AT_rich Low_complexity Low_complexity 1 27 0 29 0 0 0 chr4 180079449 180079478 -22248869 + AT_rich Low_complexity Low_complexity 1 29 0 34 0 0 0 chr4 180081600 180081634 -22246713 + AT_rich Low_complexity Low_complexity 1 34 0 1791 227 18 34 chr4 180082282 180082785 -22245562 - L1MB1 LINE L1 -1894 4252 3758 1208 194 58 16 chr4 180082785 180083094 -22245253 + L1MB1 LINE L1 4222 4543 -1603 * 4610 174 40 23 chr4 180083090 180084421 -22243926 + L1MB1 LINE L1 4807 6167 -1 663 85 50 28 chr4 180084432 180084681 -22243666 + (TA)n Simple_repeat Simple_repeat 1 254 0 2040 123 71 8 chr4 180084684 180085035 -22243312 + L1PB3 LINE L1 5782 6154 0 333 331 104 55 chr4 180085083 180085467 -22242880 - MLT1J2 LTR MaLR -12 438 36 21 0 0 0 chr4 180085604 180085625 -22242722 + AT_rich Low_complexity Low_complexity 1 21 0 872 191 79 0 chr4 180085759 180085937 -22242410 - LTR47A LTR ERVL 0 452 261 707 224 14 129 chr4 180086042 180086328 -22242019 + LTR8A LTR ERV1 34 286 -441 2652 154 5 7 chr4 180086369 180086798 -22241549 + MSTA LTR MaLR 1 428 0 975 233 97 38 chr4 180086813 180087285 -22241062 + LTR8A LTR ERV1 172 727 0 1863 157 146 11 chr4 180087576 180087953 -22240394 - MSTA LTR MaLR 0 428 1 7877 172 14 47 chr4 180087953 180089585 -22238762 - MSTA-int LTR MaLR 0 1580 3 1553 175 175 11 chr4 180089589 180089955 -22238392 - MSTA LTR MaLR -2 426 1 1342 145 16 20 chr4 180090010 180090234 -22238113 + L1MA2 LINE L1 6058 6282 -22 3911 139 3 26 chr4 180090234 180090860 -22237487 + LTR9 LTR ERV1 1 612 0 1342 145 16 20 chr4 180090860 180090883 -22237464 + L1MA2 LINE L1 6282 6304 0 1022 84 0 0 chr4 180091090 180091221 -22237126 - LTR12 LTR ERV1 0 714 584 5178 73 133 1 chr4 180091223 180091953 -22236394 - LTR12 LTR ERV1 0 826 1 1739 171 58 25 chr4 180092665 180093028 -22235319 - THE1C LTR MaLR 0 375 1 1757 103 0 0 chr4 180093068 180093300 -22235047 - AluSg SINE Alu -78 232 1 285 252 238 50 chr4 180093432 180093714 -22234633 + L2 LINE L2 2262 2596 -718 296 300 0 0 chr4 180094093 180094163 -22234184 + L2 LINE L2 3243 3312 -1 613 233 11 78 chr4 180094451 180094631 -22233716 + MER5B DNA MER1_type 5 172 -6 183 349 35 0 chr4 180094721 180094807 -22233540 - MER5B DNA MER1_type -89 89 1 273 306 0 10 chr4 180095430 180095528 -22232819 + T-rich Low_complexity Low_complexity 5 101 0 750 221 25 100 chr4 180095694 180095975 -22232372 + LTR68 LTR ERV1 228 487 -253 738 186 43 103 chr4 180095985 180096238 -22232109 - MER31B LTR ERV1 -4 462 225 291 273 20 10 chr4 180097710 180097838 -22230509 + (TA)n Simple_repeat Simple_repeat 1 129 0 1351 190 0 4 chr4 180097958 180098184 -22230163 + AluJo SINE Alu 3 227 -85 246 328 35 17 chr4 180099072 180099188 -22229159 - MIR3 SINE MIR -46 162 45 1050 253 81 23 chr4 180099329 180099725 -22228622 - L1ME3A LINE L1 0 6170 5752 866 258 124 20 chr4 180099786 180100501 -22227846 - L1MEc LINE L1 -3564 2651 1900 2511 152 39 5 chr4 180100520 180100929 -22227418 + MSTA LTR MaLR 1 423 -5 588 76 0 0 chr4 180101153 180101232 -22227115 - MADE1 DNA Mariner 0 80 2 860 281 119 57 chr4 180101552 180102548 -22225799 - L1MEc LINE L1 -4529 1867 810 325 312 91 20 chr4 180102596 180102795 -22225552 - L1ME3A LINE L1 -1161 4985 4773 * 447 317 50 47 chr4 180102792 180103009 -22225338 - L1ME3A LINE L1 -2686 3460 3240 2094 179 37 43 chr4 180103009 180103473 -22224874 - LOR1b LTR ERV1 0 461 1 447 317 50 47 chr4 180103473 180103615 -22224732 - L1ME3A LINE L1 -2906 3240 3100 32 43 0 0 chr4 180103623 180103669 -22224678 + AT_rich Low_complexity Low_complexity 1 46 0 2067 104 13 10 chr4 180104319 180104626 -22223721 + AluSx SINE Alu 1 308 -4 198 300 0 0 chr4 180104794 180104844 -22223503 - MIR SINE MIR -3 259 210 1409 195 0 23 chr4 180104873 180105130 -22223217 - AluJb SINE Alu -61 251 1 312 202 77 39 chr4 180105131 180105235 -22223112 - MIR SINE MIR -64 198 91 1299 204 7 28 chr4 180105319 180105649 -22222698 + AluJo SINE Alu 12 312 0 229 304 59 37 chr4 180106213 180106348 -22221999 + LTR33 LTR ERVL 328 465 -56 765 237 148 7 chr4 180106618 180106901 -22221446 + L1ME2 LINE L1 5806 6128 -36 340 303 8 8 chr4 180107065 180107187 -22221160 - MER94 DNA DNA -7 127 6 239 232 54 18 chr4 180107692 180107748 -22220599 - MLT1J1 LTR MaLR -142 304 247 333 308 71 49 chr4 180107931 180108197 -22220150 - MLT1J LTR MaLR -7 504 233 238 250 21 0 chr4 180108445 180108493 -22219854 + L2 LINE L2 3005 3053 -260 525 311 95 32 chr4 180108606 180108944 -22219403 + LTR33 LTR ERVL 156 514 -7 335 306 107 28 chr4 180108985 180109201 -22219146 + L2 LINE L2 3077 3309 -4 2357 51 0 20 chr4 180109247 180109543 -22218804 + AluY SINE Alu 5 294 -17 23 54 0 0 chr4 180111091 180111128 -22217219 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 180111977 180112012 -22216335 + AT_rich Low_complexity Low_complexity 1 35 0 227 255 29 10 chr4 180112260 180112362 -22215985 + (TAA)n Simple_repeat Simple_repeat 1 104 0 457 226 129 78 chr4 180112394 180112983 -22215364 + Charlie2 DNA MER1_type 2244 2862 0 202 292 78 39 chr4 180113000 180113154 -22215193 - L2 LINE L2 -1766 1548 1389 1291 156 0 36 chr4 180113286 180113510 -22214837 + AluSg/x SINE Alu 92 307 -3 474 333 12 6 chr4 180113929 180114097 -22214250 - MIR SINE MIR -19 243 75 1112 213 21 12 chr4 180116269 180116597 -22211750 - Charlie1 DNA MER1_type 0 2761 2431 183 325 39 13 chr4 180117192 180117269 -22211078 - MIR3 SINE MIR -21 187 109 8672 201 47 41 chr4 180118464 180121840 -22206507 + L1MB2 LINE L1 20 3502 -2880 5606 140 30 40 chr4 180121841 180121883 -22206464 + Tigger1 DNA MER2_type 575 616 -1802 2006 91 40 34 chr4 180121883 180122180 -22206167 - AluY SINE Alu -12 299 1 5606 140 30 40 chr4 180122180 180123172 -22205175 + Tigger1 DNA MER2_type 616 1599 -819 1662 179 63 48 chr4 180123168 180123243 -22205104 + Tigger1 DNA MER2_type 2017 2089 -329 * 1817 163 32 32 chr4 180123243 180123618 -22204729 + THE1C LTR MaLR 1 375 0 1662 179 63 48 chr4 180123618 180123819 -22204528 + Tigger1 DNA MER2_type 2089 2304 -114 2041 131 0 0 chr4 180123819 180124130 -22204217 - AluSc SINE Alu 0 311 1 1662 179 63 48 chr4 180124130 180124247 -22204100 + Tigger1 DNA MER2_type 2304 2418 0 5381 235 38 21 chr4 180124249 180125763 -22202584 + L1MB2 LINE L1 3858 5415 -1004 1965 128 3 23 chr4 180125763 180126069 -22202278 + AluSg SINE Alu 1 300 -10 5381 235 38 21 chr4 180126069 180126679 -22201668 + L1MB2 LINE L1 5415 6013 -406 249 212 30 0 chr4 180126678 180126744 -22201603 + L1MB2 LINE L1 6337 6404 -3 * 240 241 17 0 chr4 180126944 180127002 -22201345 + MARNA DNA Mariner 313 371 -215 243 0 0 0 chr4 180127254 180127281 -22201066 + (A)n Simple_repeat Simple_repeat 1 27 0 1151 231 123 27 chr4 180127451 180127785 -22200562 + MLT1D LTR MaLR 140 505 0 22 35 0 0 chr4 180128008 180128037 -22200310 + AT_rich Low_complexity Low_complexity 1 29 0 231 36 0 0 chr4 180130893 180130921 -22197426 + (A)n Simple_repeat Simple_repeat 1 28 0 180 0 0 0 chr4 180132577 180132597 -22195750 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2082 75 8 0 chr4 180133262 180133529 -22194818 - AluY SINE Alu -7 304 36 22 70 0 0 chr4 180134106 180134149 -22194198 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr4 180138095 180138118 -22190229 + AT_rich Low_complexity Low_complexity 1 23 0 236 330 0 43 chr4 180138317 180138411 -22189936 + MLT1-int LTR MaLR 1006 1095 -276 1825 129 219 3 chr4 180138761 180139145 -22189202 - L1MCa LINE L1 -3932 2494 2028 875 110 17 0 chr4 180139148 180139266 -22189081 - AluSq/x SINE Alu -192 120 1 400 195 0 0 chr4 180139266 180139343 -22189004 + L1MCa LINE L1 1926 2002 -4424 21 0 0 0 chr4 180139868 180139889 -22188458 + AT_rich Low_complexity Low_complexity 1 21 0 464 350 85 57 chr4 180139985 180140231 -22188116 + HERVL LTR ERVL 2709 2946 -2708 2196 115 3 0 chr4 180140231 180140526 -22187821 - AluSp SINE Alu -17 296 1 464 350 85 57 chr4 180140526 180141536 -22186811 + HERVL LTR ERVL 2946 4001 -1653 515 287 15 51 chr4 180141610 180141805 -22186542 - ERVL LTR ERVL -1439 4325 4138 372 247 92 53 chr4 180141898 180142181 -22186166 + L1MC5 LINE L1 7614 7907 -54 23 0 0 0 chr4 180142181 180142204 -22186143 + AT_rich Low_complexity Low_complexity 1 23 0 1321 219 13 20 chr4 180142204 180142506 -22185841 + AluJo SINE Alu 1 300 -12 809 172 12 0 chr4 180142573 180142742 -22185605 - L1MA7 LINE L1 0 6291 6121 1478 154 0 0 chr4 180142742 180142982 -22185365 + Tigger5 DNA MER2_type 2052 2291 -32 10230 216 61 21 chr4 180142990 180144341 -22184006 - L1MA7 LINE L1 -678 5613 4318 1751 181 3 3 chr4 180144341 180144650 -22183697 + AluJb SINE Alu 1 309 -3 10230 216 61 21 chr4 180144650 180146325 -22182022 - L1MA7 LINE L1 -1973 4318 2498 38 0 0 0 chr4 180146326 180146364 -22181983 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr4 180146694 180146717 -22181630 + AT_rich Low_complexity Low_complexity 1 23 0 2121 126 3 3 chr4 180147509 180147819 -22180528 + AluSx SINE Alu 3 312 0 335 312 46 29 chr4 180149610 180149783 -22178564 - HAL1 LINE L1 -83 2424 2249 358 332 93 16 chr4 180150084 180150448 -22177899 - HAL1 LINE L1 -719 1788 1397 463 305 16 0 chr4 180150545 180150673 -22177674 + MER94 DNA DNA 5 134 0 261 307 89 20 chr4 180151428 180151644 -22176703 - L1ME3A LINE L1 -241 5929 5704 341 307 63 0 chr4 180151848 180151975 -22176372 + LTR16A LTR ERVL 301 435 -15 386 368 32 7 chr4 180151993 180152148 -22176199 + HERV16 LTR ERVL 1 159 -4837 737 329 93 24 chr4 180152553 180153015 -22175332 + HERV16 LTR ERVL 645 1138 -3858 335 106 0 0 chr4 180153025 180153072 -22175275 - MADE1 DNA Mariner 0 80 34 2280 342 72 23 chr4 180153165 180154712 -22173635 + HERV16 LTR ERVL 1160 2860 -2136 361 374 26 17 chr4 180155158 180155388 -22172959 + HERV16 LTR ERVL 3384 3615 -2149 337 335 76 47 chr4 180155382 180155764 -22172583 + HERV16 LTR ERVL 3374 3766 -1230 * 887 357 58 21 chr4 180155766 180156231 -22172116 + HERV16 LTR ERVL 4165 4646 -1118 329 244 11 22 chr4 180156854 180156944 -22171403 + MER21B LTR ERV1 1 89 -774 904 242 121 32 chr4 180157103 180157384 -22170963 + MER21B LTR ERV1 143 448 -415 240 61 0 0 chr4 180157398 180157431 -22170916 - LTR54 LTR ERV1 0 510 478 1441 209 42 16 chr4 180157453 180157761 -22170586 - LTR51 LTR ERV1 0 671 356 839 250 119 101 chr4 180157761 180158474 -22169873 - LTR8A LTR ERV1 0 727 2 706 193 96 2 chr4 180158474 180158751 -22169596 - LTR51 LTR ERV1 -311 360 1 2229 185 24 66 chr4 180158751 180159254 -22169093 - LTR54 LTR ERV1 -28 482 1 1052 240 65 40 chr4 180159254 180159565 -22168782 + MER21B LTR ERV1 470 794 -69 2421 80 0 3 chr4 180159565 180159877 -22168470 + AluY SINE Alu 1 311 0 1052 240 65 40 chr4 180159877 180159946 -22168401 + MER21B LTR ERV1 794 860 -3 308 295 11 32 chr4 180160150 180160245 -22168102 + LTR16A LTR ERVL 356 448 -2 202 250 0 18 chr4 180160341 180160397 -22167950 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 538 310 8 38 chr4 180160841 180161080 -22167267 + MER46C DNA MER2_type 71 302 -36 24 32 0 0 chr4 180162178 180162209 -22166138 + AT_rich Low_complexity Low_complexity 1 31 0 354 268 51 29 chr4 180162982 180163120 -22165227 + L1ME3A LINE L1 5134 5274 -872 312 242 0 0 chr4 180163122 180163188 -22165159 - MER8 DNA MER2_type 0 239 174 2332 140 47 61 chr4 180163188 180163631 -22164716 + Tigger2 DNA MER2_type 2282 2718 0 335 283 173 13 chr4 180163638 180163864 -22164483 + L1ME3A LINE L1 5319 5580 -590 378 0 0 0 chr4 180163897 180163939 -22164408 + (TA)n Simple_repeat Simple_repeat 2 43 0 726 255 67 10 chr4 180163940 180164238 -22164109 + L1ME3A LINE L1 5674 5988 -182 1457 274 75 26 chr4 180164738 180165612 -22162735 + L1MEc LINE L1 816 1732 -4664 1140 214 53 39 chr4 180165623 180165908 -22162439 + AluJo SINE Alu 11 299 -13 1339 262 115 18 chr4 180165909 180166754 -22161593 + L1MEc LINE L1 1711 2577 -3638 285 357 57 14 chr4 180166768 180166978 -22161369 - LTR16B LTR ERVL -13 451 233 258 306 0 14 chr4 180167080 180167152 -22161195 - LTR16B LTR ERVL -389 75 5 3002 345 57 36 chr4 180167695 180171659 -22156688 - HERV16 LTR ERVL -793 4861 685 2202 169 32 44 chr4 180172721 180172822 -22155525 + MSTC LTR MaLR 1 102 -326 2146 102 0 20 chr4 180172822 180173127 -22155220 + AluSg SINE Alu 4 302 -8 2202 169 32 44 chr4 180173127 180173458 -22154889 + MSTC LTR MaLR 102 428 0 1763 169 26 40 chr4 180173827 180174206 -22154141 - THE1C LTR MaLR 0 375 2 39 50 0 0 chr4 180175029 180175089 -22153258 + AT_rich Low_complexity Low_complexity 1 60 0 1471 203 3 7 chr4 180175351 180175641 -22152706 + AluJo SINE Alu 5 293 -19 224 132 0 57 chr4 180175641 180175653 -22152694 + (TA)n Simple_repeat Simple_repeat 1 12 -38 4464 48 18 9 chr4 180175653 180176210 -22152137 + LTR6A LTR ERV1 2 563 -1 224 132 0 57 chr4 180176210 180176250 -22152097 + (TA)n Simple_repeat Simple_repeat 12 50 0 308 290 0 0 chr4 180176256 180176356 -22151991 - HAL1b LINE L1 -272 1076 977 333 322 27 0 chr4 180176524 180176673 -22151674 - HAL1b LINE L1 -574 774 622 1789 140 17 10 chr4 180176705 180176997 -22151350 - L1PA10 LINE L1 -13 6155 5862 297 289 49 67 chr4 180177123 180177407 -22150940 - HAL1b LINE L1 -845 503 225 240 258 94 50 chr4 180177612 180177771 -22150576 - L1MC5 LINE L1 -33 7928 7763 557 248 32 32 chr4 180177782 180177907 -22150440 + MER45A DNA AcHobo 4 128 -50 1392 205 37 20 chr4 180179478 180179775 -22148572 - AluJo SINE Alu -10 302 1 186 0 28 56 chr4 180180740 180180776 -22147571 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 606 274 146 34 chr4 180180840 180181190 -22147157 - MLT1I LTR MaLR -18 391 3 1601 242 66 19 chr4 180181839 180182398 -22145949 - L1ME2 LINE L1 -17 6147 5563 1110 92 0 0 chr4 180182471 180182613 -22145734 + AluSg/x SINE Alu 164 305 -7 2019 75 0 11 chr4 180182649 180182930 -22145417 + L1PA8 LINE L1 5892 6169 -3 1414 121 45 18 chr4 180183230 180183454 -22144893 - MER30 DNA MER1_type 0 230 1 311 312 64 29 chr4 180184527 180184700 -22143647 + L2 LINE L2 1883 2061 -1253 254 286 82 10 chr4 180184708 180184806 -22143541 - LTR16A1 LTR ERVL -1 456 352 259 250 9 35 chr4 180185338 180185454 -22142893 - L1MEc LINE L1 -4261 2135 2023 1374 311 69 40 chr4 180185954 180186770 -22141577 + L1MCc LINE L1 672 1510 -4913 330 26 0 0 chr4 180186928 180186967 -22141380 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 866 347 99 30 chr4 180187993 180188697 -22139650 + L2 LINE L2 2164 2916 -398 229 240 13 13 chr4 180188749 180188824 -22139523 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 197 213 21 21 chr4 180189083 180189130 -22139217 + MIR SINE MIR 213 259 -3 5800 199 57 15 chr4 180189933 180192131 -22136216 - L1MA8 LINE L1 -11 6280 3996 28 79 0 0 chr4 180192480 180192543 -22135804 + AT_rich Low_complexity Low_complexity 1 63 0 199 159 0 48 chr4 180194048 180194111 -22134236 + CT-rich Low_complexity Low_complexity 3 62 0 1023 190 51 0 chr4 180194112 180194349 -22133998 - L1MA7 LINE L1 -7 6284 6036 791 169 5 28 chr4 180194351 180194544 -22133803 + L1MA7 LINE L1 5857 6036 -264 21 36 0 0 chr4 180194880 180194908 -22133439 + AT_rich Low_complexity Low_complexity 1 28 0 232 351 152 36 chr4 180195718 180196020 -22132327 + MLT1K LTR MaLR 73 409 -179 1672 222 46 33 chr4 180196088 180196541 -22131806 - MLT1C LTR MaLR 0 467 1 22 0 0 0 chr4 180197236 180197258 -22131089 + AT_rich Low_complexity Low_complexity 1 22 0 380 314 19 26 chr4 180199095 180199251 -22129096 + MIR SINE MIR 84 238 -24 237 249 94 55 chr4 180199701 180199882 -22128465 + L1MCc LINE L1 1281 1468 -4955 349 272 97 39 chr4 180199886 180200092 -22128255 + L1MCc LINE L1 1660 1877 -5054 2374 87 0 0 chr4 180200175 180200486 -22127861 + AluY SINE Alu 1 311 0 1568 139 120 12 chr4 180201550 180201809 -22126538 - AluSg SINE Alu -21 289 3 5570 157 34 23 chr4 180202225 180203250 -22125097 - MER57-int LTR ERV1 -4089 3448 2413 232 278 0 0 chr4 180203663 180203702 -22124645 + U3 snRNA snRNA 72 110 -107 3776 156 122 3 chr4 180203702 180204519 -22123828 - LTR28 LTR ERV1 0 1020 68 1153 198 141 12 chr4 180204644 180204977 -22123370 - L1MB8 LINE L1 -1 6177 5802 1964 278 61 17 chr4 180205054 180205712 -22122635 + L1M3a LINE L1 489 1175 -4780 1324 187 75 0 chr4 180206122 180206390 -22121957 + MLT1D LTR MaLR 218 505 0 192 294 0 0 chr4 180206390 180206441 -22121906 - MIR SINE MIR -35 227 177 378 139 73 153 chr4 180206750 180206887 -22121460 - MLT1D LTR MaLR -223 282 157 392 138 0 0 chr4 180207385 180207443 -22120904 + AluS SINE Alu 2 59 -244 * 1397 217 57 17 chr4 180207441 180207791 -22120556 - LOR1b LTR ERV1 -23 438 75 428 112 163 31 chr4 180207793 180207891 -22120456 + FRAM SINE Alu 53 163 -13 389 143 43 0 chr4 180207893 180207963 -22120384 - LOR1a LTR ERV1 -424 73 1 260 308 96 10 chr4 180207966 180208070 -22120277 - MIR SINE MIR -116 146 34 253 246 0 0 chr4 180208432 180208497 -22119850 + MIR SINE MIR 124 188 -74 1431 215 0 0 chr4 180208656 180208967 -22119380 + AluY SINE Alu 1 311 0 1817 234 47 30 chr4 180213573 180214064 -22114283 - MLT1D LTR MaLR -6 499 1 220 204 0 0 chr4 180215233 180215277 -22113070 + A-rich Low_complexity Low_complexity 5 48 0 342 282 77 36 chr4 180215285 180215505 -22112842 + L1MEc LINE L1 34 262 -6134 696 298 82 56 chr4 180215656 180216193 -22112154 + L1MEc LINE L1 481 1055 -5341 1177 249 76 39 chr4 180216193 180216392 -22111955 - MLT1D LTR MaLR -2 503 313 2079 109 0 0 chr4 180216392 180216704 -22111643 - AluSx SINE Alu 0 312 1 1177 249 76 39 chr4 180216704 180216988 -22111359 - MLT1D LTR MaLR -192 313 1 696 298 82 56 chr4 180216988 180217407 -22110940 + L1MEc LINE L1 1055 1462 -4934 813 176 0 19 chr4 180217453 180217612 -22110735 + AluJo SINE Alu 38 193 -119 1266 269 96 36 chr4 180217614 180218720 -22109627 - L1MC4 LINE L1 -203 7839 6516 312 27 0 0 chr4 180219887 180219924 -22108423 + (CA)n Simple_repeat Simple_repeat 2 38 0 333 385 19 6 chr4 180219967 180220128 -22108219 - MIR SINE MIR -89 173 11 21 0 0 0 chr4 180221785 180221806 -22106541 + AT_rich Low_complexity Low_complexity 1 21 0 578 283 16 27 chr4 180221870 180222057 -22106290 + MER5A DNA MER1_type 2 186 -3 32 67 0 0 chr4 180222140 180222200 -22106147 + AT_rich Low_complexity Low_complexity 1 60 0 195 218 0 0 chr4 180222482 180222537 -22105810 + (CA)n Simple_repeat Simple_repeat 2 56 0 3468 207 143 117 chr4 180222644 180223203 -22105144 - L1MD3 LINE L1 -1 7994 7451 258 271 36 64 chr4 180223203 180223343 -22105004 - MLT1F1 LTR MaLR -429 138 3 3468 207 143 117 chr4 180223343 180223436 -22104911 - L1MD3 LINE L1 -544 7451 7362 445 123 12 25 chr4 180223436 180223517 -22104830 - MADE1 DNA Mariner 0 80 1 3468 207 143 117 chr4 180223517 180224440 -22103907 - L1MD3 LINE L1 -633 7362 6234 284 281 53 44 chr4 180224826 180224940 -22103407 + MIR SINE MIR 56 170 -92 670 234 35 88 chr4 180224954 180225180 -22103167 - MER20 DNA MER1_type -5 214 1 2798 166 15 54 chr4 180225524 180225681 -22102666 + L1P5 LINE L1 4705 4867 -1287 2161 121 12 0 chr4 180225681 180226013 -22102334 - L1PA14 LINE L1 -1 6160 5825 2798 166 15 54 chr4 180226013 180226988 -22101359 + L1P5 LINE L1 4867 5791 -363 755 177 7 0 chr4 180227036 180227177 -22101170 + L1PB3 LINE L1 4705 4846 -1300 2094 160 3 0 chr4 180227179 180227523 -22100824 + L1PB3 LINE L1 5803 6147 -7 26 30 0 0 chr4 180227530 180227563 -22100784 + AT_rich Low_complexity Low_complexity 1 33 0 322 260 0 0 chr4 180227589 180227666 -22100681 + MIR SINE MIR 173 249 -13 2058 115 4 0 chr4 180228307 180228613 -22099734 - AluSg SINE Alu 0 307 1 567 299 122 31 chr4 180228722 180229082 -22099265 - HERVL LTR ERVL -1041 4613 4261 1933 229 7 12 chr4 180229721 180230127 -22098220 + MLT2D LTR ERVL 1 404 -10 409 264 67 28 chr4 180230135 180230346 -22098001 - HERVL LTR ERVL -1855 3799 3633 360 322 40 34 chr4 180230361 180230538 -22097809 - L1M4 LINE L1 -937 5209 5032 1069 129 103 0 chr4 180231209 180231401 -22096946 + L1PA13 LINE L1 5454 5663 -500 492 77 0 4 chr4 180231406 180231613 -22096734 + AluY SINE Alu 1 294 -15 3112 109 35 0 chr4 180231615 180232099 -22096248 + L1PA13 LINE L1 5652 6152 -11 1102 208 18 110 chr4 180232137 180232537 -22095810 + MLT1A1 LTR MaLR 3 365 0 565 271 48 48 chr4 180232572 180232841 -22095506 + L1M4 LINE L1 4080 4348 -1798 3570 229 66 41 chr4 180232943 180234176 -22094171 + L1MC4a LINE L1 5968 7230 -578 486 0 0 0 chr4 180234188 180234242 -22094105 + (TA)n Simple_repeat Simple_repeat 2 55 0 249 269 237 0 chr4 180234246 180234339 -22094008 - L1MD3 LINE L1 -1219 6776 6662 291 114 0 0 chr4 180234348 180234392 -22093955 + (TA)n Simple_repeat Simple_repeat 1 44 0 328 305 91 43 chr4 180234394 180234581 -22093766 + L1MC4a LINE L1 7249 7444 -364 * 678 236 33 11 chr4 180234578 180234760 -22093587 - L1M4 LINE L1 -1210 4936 4751 6999 119 9 4 chr4 180234760 180236611 -22091736 - L1PA8A LINE L1 0 6131 4277 27 0 0 0 chr4 180237375 180237402 -22090945 + AT_rich Low_complexity Low_complexity 1 27 0 2011 122 0 17 chr4 180237691 180238007 -22090340 + AluSx SINE Alu 5 312 0 180 125 0 0 chr4 180238014 180238046 -22090301 + (T)n Simple_repeat Simple_repeat 1 32 0 2049 110 3 20 chr4 180238169 180238500 -22089847 - AluSg SINE Alu 0 310 1 2437 185 8 0 chr4 180238596 180239066 -22089281 - L1M4 LINE L1 -1823 4323 3850 740 256 106 17 chr4 180241129 180241422 -22086925 + HAL1 LINE L1 1479 1797 -710 408 359 86 14 chr4 180241437 180241657 -22086690 + HAL1 LINE L1 1736 1971 -536 2823 176 4 6 chr4 180241694 180242193 -22086154 + L1PA16 LINE L1 5648 6145 -21 278 311 93 27 chr4 180242199 180242533 -22085814 + HAL1 LINE L1 2035 2390 -117 21 0 0 0 chr4 180242720 180242741 -22085606 + AT_rich Low_complexity Low_complexity 1 21 0 242 228 0 0 chr4 180243624 180243681 -22084666 + A-rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr4 180244103 180244131 -22084216 + AT_rich Low_complexity Low_complexity 1 28 0 1980 114 11 0 chr4 180244348 180244629 -22083718 + AluSc SINE Alu 1 284 -25 226 67 44 0 chr4 180244629 180244674 -22083673 + (TA)n Simple_repeat Simple_repeat 1 47 0 260 232 211 11 chr4 180245177 180245272 -22083075 - L2 LINE L2 -21 3251 3138 2302 138 78 2 chr4 180245454 180245852 -22082495 + MSTA LTR MaLR 1 428 0 2258 113 3 0 chr4 180245968 180246279 -22082068 + AluSx SINE Alu 1 312 0 238 240 0 0 chr4 180246361 180246411 -22081936 - L2 LINE L2 -9 3263 3214 396 91 0 0 chr4 180246707 180246773 -22081574 + (TA)n Simple_repeat Simple_repeat 2 67 0 1086 135 0 0 chr4 180246790 180246968 -22081379 + (TA)n Simple_repeat Simple_repeat 1 178 0 183 42 0 0 chr4 180246968 180246992 -22081355 + (CA)n Simple_repeat Simple_repeat 1 24 0 1877 184 49 34 chr4 180247236 180247670 -22080677 - MSTA LTR MaLR 0 428 1 189 0 0 0 chr4 180248007 180248028 -22080319 + (A)n Simple_repeat Simple_repeat 1 21 0 34 24 0 0 chr4 180249054 180249095 -22079252 + AT_rich Low_complexity Low_complexity 1 41 0 4410 73 0 10 chr4 180249696 180250286 -22078061 + L1PA8A LINE L1 5548 6131 0 275 335 87 59 chr4 180250794 180251337 -22077010 + ERVL LTR ERVL 1002 1559 -4205 633 351 132 17 chr4 180251383 180252041 -22076306 + ERVL LTR ERVL 4172 4905 -859 317 328 8 8 chr4 180252447 180252581 -22075766 + ERVL LTR ERVL 5194 5327 -327 564 277 36 0 chr4 180254445 180254611 -22073736 + L2 LINE L2 2232 2403 -911 3166 100 40 2 chr4 180254643 180255113 -22073234 - L1PA7 LINE L1 -1490 4656 4169 5076 97 92 26 chr4 180255113 180256570 -22071777 + L1PA7 LINE L1 4640 6152 -2 375 332 126 16 chr4 180256619 180256866 -22071481 + L2 LINE L2 2486 2759 -555 2160 106 3 0 chr4 180257872 180258173 -22070174 + AluY SINE Alu 1 302 -9 2168 78 7 7 chr4 180259291 180259597 -22068750 + AluY SINE Alu 1 306 -5 22 70 0 0 chr4 180259986 180260029 -22068318 + AT_rich Low_complexity Low_complexity 1 43 0 270 0 0 0 chr4 180260940 180260970 -22067377 + (TG)n Simple_repeat Simple_repeat 2 31 0 1136 212 26 42 chr4 180261583 180261889 -22066458 - MLT1A2 LTR MaLR -67 307 7 3597 154 14 65 chr4 180264512 180265240 -22063107 - LTR8 LTR ERV1 0 691 1 40 37 0 0 chr4 180266146 180266200 -22062147 + AT_rich Low_complexity Low_complexity 1 54 0 1778 210 53 12 chr4 180266404 180266894 -22061453 + L1MD1 LINE L1 1175 1684 -4856 596 257 64 10 chr4 180266872 180267074 -22061273 + L1MD1 LINE L1 3899 4111 -2429 * 3987 228 91 23 chr4 180267096 180269381 -22058966 + L1MD1 LINE L1 4191 6627 -9 2079 254 42 48 chr4 180270546 180270707 -22057640 - L1ME LINE L1 -2365 3715 3555 2012 123 32 0 chr4 180270707 180270991 -22057356 + AluSx SINE Alu 1 293 -19 2079 254 42 48 chr4 180270991 180271878 -22056469 - L1ME LINE L1 -2525 3555 2673 1909 108 25 0 chr4 180271898 180272175 -22056172 - L1PA10 LINE L1 -23 6145 5862 25 0 0 0 chr4 180272950 180272975 -22055372 + AT_rich Low_complexity Low_complexity 1 25 0 268 207 139 45 chr4 180273167 180273433 -22054914 - L1ME LINE L1 -5073 997 707 104 9 0 0 chr4 180273570 180273681 -22054666 + AT_rich Low_complexity Low_complexity 1 111 0 13145 172 45 12 chr4 180273861 180276325 -22052022 - L1PB1 LINE L1 -1 6866 4486 234 0 0 0 chr4 180276325 180276351 -22051996 + (TTG)n Simple_repeat Simple_repeat 2 27 0 13145 172 45 12 chr4 180276351 180276898 -22051449 - L1PB1 LINE L1 -2381 4486 3959 207 69 0 0 chr4 180276898 180276927 -22051420 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 13145 172 45 12 chr4 180276927 180278081 -22050266 - L1PB1 LINE L1 -2908 3959 2555 386 273 142 55 chr4 180278088 180278765 -22049582 + L1ME3A LINE L1 4317 5052 -1094 5528 200 31 13 chr4 180278804 180280278 -22048069 - L1MC2 LINE L1 -10 6334 4839 480 320 66 48 chr4 180280414 180280914 -22047433 + L1ME3A LINE L1 5254 5762 -400 345 238 214 0 chr4 180281032 180281116 -22047231 + MER45 DNA AcHobo 2 103 -1478 313 253 160 58 chr4 180281194 180281419 -22046928 + L1ME3A LINE L1 5915 6162 -8 919 52 0 0 chr4 180281929 180282045 -22046302 + L1PA2 LINE L1 6040 6155 0 823 222 39 17 chr4 180283177 180283357 -22044990 + MER8 DNA MER2_type 1 184 -55 697 187 0 16 chr4 180283359 180283482 -22044865 + FRAM SINE Alu 34 154 -22 9468 91 2 1 chr4 180285738 180287853 -22040494 - L1PA7 LINE L1 0 6154 4051 2173 118 50 3 chr4 180287853 180288193 -22040154 + L1P LINE L1 1880 2235 -3911 2294 226 128 3 chr4 180288349 180289074 -22039273 - L1 LINE L1 -1552 4594 3779 * 8898 181 66 64 chr4 180289069 180289270 -22039077 - L1M4c LINE L1 -3981 2403 2204 340 247 14 0 chr4 180289270 180289343 -22039004 + Tigger5 DNA MER2_type 2250 2323 0 8898 181 66 64 chr4 180289343 180291466 -22036881 - L1M4c LINE L1 -4180 2204 1 215 281 0 11 chr4 180292523 180292612 -22035735 + CT-rich Low_complexity Low_complexity 2 89 0 340 237 16 54 chr4 180292714 180292900 -22035447 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 327 288 24 0 chr4 180292845 180292970 -22035377 + (TA)n Simple_repeat Simple_repeat 1 128 0 * 979 194 18 0 chr4 180294520 180294742 -22033605 - L1MA7 LINE L1 -2 6289 6064 507 101 0 0 chr4 180294924 180295003 -22033344 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 260 75 0 57 chr4 180294999 180295052 -22033295 + (TTCTCC)n Simple_repeat Simple_repeat 6 55 0 * 353 21 0 21 chr4 180295056 180295103 -22033244 + (TTTC)n Simple_repeat Simple_repeat 4 49 0 21 0 0 0 chr4 180295572 180295593 -22032754 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 180297272 180297293 -22031054 + AT_rich Low_complexity Low_complexity 1 21 0 205 176 0 73 chr4 180298074 180298142 -22030205 + A-rich Low_complexity Low_complexity 2 64 0 282 194 0 0 chr4 180300577 180300639 -22027708 + CT-rich Low_complexity Low_complexity 5 66 0 290 345 31 49 chr4 180301689 180301912 -22026435 + MLT1K LTR MaLR 88 306 -282 185 220 275 9 chr4 180302939 180303048 -22025299 + MIR SINE MIR 70 207 -55 540 301 75 25 chr4 180303227 180303426 -22024921 - MIR SINE MIR -49 213 5 249 403 42 7 chr4 180303424 180303568 -22024779 + MIR3 SINE MIR 57 205 -3 * 22 0 0 0 chr4 180305337 180305359 -22022988 + AT_rich Low_complexity Low_complexity 1 22 0 362 292 70 27 chr4 180305443 180305719 -22022628 - MER90 LTR ERV1 -111 464 81 380 236 0 24 chr4 180306725 180306852 -22021495 + (CATATA)n Simple_repeat Simple_repeat 4 127 0 389 314 0 9 chr4 180306852 180306957 -22021390 - MIR SINE MIR -112 150 47 201 237 0 0 chr4 180307008 180307067 -22021280 + (TATG)n Simple_repeat Simple_repeat 4 62 0 253 243 54 0 chr4 180307072 180307146 -22021201 + L1MC4 LINE L1 6621 6698 -1344 181 235 12 12 chr4 180307148 180307229 -22021118 + (TA)n Simple_repeat Simple_repeat 2 82 0 229 299 39 0 chr4 180307489 180307566 -22020781 - MER117 DNA MER1_type -107 90 11 208 178 22 0 chr4 180308664 180308709 -22019638 + T-rich Low_complexity Low_complexity 2 47 0 231 272 120 40 chr4 180308744 180308869 -22019478 - MIR SINE MIR -30 232 98 739 147 8 16 chr4 180309328 180309457 -22018890 - L1PA16 LINE L1 -9 6157 6030 846 197 0 0 chr4 180311352 180311494 -22016853 + MER70A LTR ERVL 1 142 -330 1076 226 52 7 chr4 180312027 180312465 -22015882 - MLT1D LTR MaLR 0 505 27 447 279 79 0 chr4 180313354 180313494 -22014853 - Charlie1 DNA MER1_type -906 1855 1705 949 277 40 12 chr4 180313497 180313826 -22014521 + Charlie1 DNA MER1_type 1863 2200 -561 247 218 90 0 chr4 180313834 180313912 -22014435 - MER58 DNA MER1_type -145 196 112 3030 233 79 48 chr4 180313913 180314901 -22013446 - L1MC3 LINE L1 -47 7738 6720 301 250 11 0 chr4 180314915 180315003 -22013344 + Charlie1 DNA MER1_type 2187 2275 -486 229 224 32 136 chr4 180315004 180315129 -22013218 + L1MB5 LINE L1 2 113 -6429 880 192 30 5 chr4 180315139 180315342 -22013005 + L1MB5 LINE L1 4007 4214 -2430 3438 234 44 49 chr4 180315350 180315830 -22012517 + L1MB5 LINE L1 4444 4925 -1747 2155 124 7 0 chr4 180315830 180316136 -22012211 + AluSx SINE Alu 1 308 -4 3438 234 44 49 chr4 180316136 180317537 -22010810 + L1MB5 LINE L1 4925 6663 -9 32 43 0 0 chr4 180317608 180317654 -22010693 + AT_rich Low_complexity Low_complexity 1 46 0 1929 266 82 11 chr4 180317668 180318430 -22009917 + L1ME1 LINE L1 5357 6332 -2 185 302 139 70 chr4 180319846 180320018 -22008329 - L2 LINE L2 -1294 2020 1837 1524 208 17 22 chr4 180321963 180322498 -22005849 + LTR49-int LTR ERV1 855 1449 -3487 2748 6 0 0 chr4 180322570 180322881 -22005466 - L1HS LINE L1 0 6155 5845 937 251 61 62 chr4 180322900 180323757 -22004590 + LTR49-int LTR ERV1 1529 3865 -2466 973 249 16 26 chr4 180323954 180324259 -22004088 + LTR49-int LTR ERV1 2745 3046 -1890 4304 106 111 133 chr4 180324283 180325719 -22002628 + pTR5 LTR ERV1 749 2438 0 881 224 45 88 chr4 180325730 180326204 -22002143 + LTR49-int LTR ERV1 3078 4818 -1513 339 269 119 6 chr4 180326880 180327040 -22001307 + MER104 DNA Tc2 2 179 -1 22 35 0 0 chr4 180327072 180327101 -22001246 + AT_rich Low_complexity Low_complexity 1 29 0 908 316 24 32 chr4 180327122 180327533 -22000814 + L1MEc LINE L1 35 442 -5954 6087 102 2 23 chr4 180328165 180329411 -21998936 - L1PA12 LINE L1 0 6168 4929 1545 230 22 0 chr4 180329415 180329728 -21998619 + L1PA12 LINE L1 729 1048 -6533 2227 84 0 7 chr4 180329734 180330044 -21998303 - AluY SINE Alu -3 308 1 7344 41 0 0 chr4 180330069 180331127 -21997220 - L1PA5 LINE L1 -8 6146 5089 727 72 0 0 chr4 180331127 180331224 -21997123 + L1P LINE L1 4468 4564 -1582 * 3432 182 38 29 chr4 180331210 180332152 -21996195 + L1PA12 LINE L1 2081 3039 -4535 2008 260 35 32 chr4 180332591 180333151 -21995196 - L1MB7 LINE L1 -37 6147 5583 1771 141 0 44 chr4 180333151 180333448 -21994899 + AluSx SINE Alu 16 299 -13 2008 260 35 32 chr4 180333448 180333633 -21994714 - L1MB7 LINE L1 -601 5583 5400 777 165 16 60 chr4 180333639 180333821 -21994526 + MSTD LTR MaLR 223 396 0 1546 231 42 29 chr4 180333821 180335693 -21992654 - L1MC4a LINE L1 -743 5403 5080 285 298 69 23 chr4 180336002 180336133 -21992214 + L2 LINE L2 2144 2280 -1034 9260 66 9 10 chr4 180336178 180338212 -21990135 - L1PA6 LINE L1 -2 6152 4122 1354 30 0 0 chr4 180338212 180338378 -21989969 + L1P LINE L1 2918 3083 -3063 * 2767 93 0 5 chr4 180338377 180338765 -21989582 - L1PA6 LINE L1 -2028 4118 3733 9287 65 5 7 chr4 180338865 180340662 -21987685 - L1PA6 LINE L1 -240 5914 4122 1238 46 0 23 chr4 180340659 180340832 -21987515 + L1P LINE L1 2915 3083 -3063 * 14016 84 4 0 chr4 180340831 180343354 -21984993 - L1PA6 LINE L1 -2028 4118 1590 342 45 0 0 chr4 180343794 180343838 -21984509 + (TA)n Simple_repeat Simple_repeat 2 45 0 439 331 148 0 chr4 180343842 180344132 -21984215 - L1ME3A LINE L1 -40 6130 5798 326 303 76 9 chr4 180344140 180344351 -21983996 - L1ME3A LINE L1 -407 5763 5539 26 50 0 0 chr4 180344464 180344504 -21983843 + AT_rich Low_complexity Low_complexity 1 40 0 425 213 9 0 chr4 180345159 180345267 -21983080 + (TA)n Simple_repeat Simple_repeat 2 110 0 1017 300 13 3 chr4 180345986 180346286 -21982061 - MLT1E3 LTR MaLR 0 624 322 1810 156 11 0 chr4 180346626 180346909 -21981438 + AluSx SINE Alu 27 312 0 388 359 238 5 chr4 180347745 180348417 -21979930 + L2 LINE L2 1952 2780 -534 921 195 37 0 chr4 180348435 180348625 -21979722 + L1PB1 LINE L1 4 200 -6663 12717 162 66 14 chr4 180348627 180354546 -21973801 + L1PB1 LINE L1 636 6867 0 472 221 38 8 chr4 180354633 180354764 -21973583 + MER67D LTR ERV1 380 514 0 434 308 58 17 chr4 180354818 180354990 -21973357 - MIR SINE MIR -1 261 83 5601 182 15 24 chr4 180355013 180355435 -21972912 - L1MC1 LINE L1 -17 6316 5892 2215 168 44 17 chr4 180355435 180355846 -21972501 - MSTB LTR MaLR -4 422 1 5601 182 15 24 chr4 180355846 180356666 -21971681 - L1MC1 LINE L1 -441 5892 5083 1933 148 0 7 chr4 180356669 180356973 -21971374 + AluSx SINE Alu 1 302 -10 5357 233 36 42 chr4 180357000 180358967 -21969380 + L1M1 LINE L1 2 2667 -4898 636 340 22 32 chr4 180358983 180359389 -21968958 + L1P4 LINE L1 1 402 -7179 5848 219 191 10 chr4 180359395 180363315 -21965032 + L1P4 LINE L1 2094 6926 -673 342 331 64 88 chr4 180363420 180364078 -21964269 - L1MC1 LINE L1 -1677 4469 3828 267 342 65 5 chr4 180364188 180364387 -21963960 - HAL1b LINE L1 -738 610 400 369 218 13 13 chr4 180365797 180365875 -21962472 + MLT1E2 LTR MaLR 2 79 -547 447 230 87 8 chr4 180365975 180366101 -21962246 + MLT1D LTR MaLR 370 505 0 24 53 0 0 chr4 180366752 180366790 -21961557 + AT_rich Low_complexity Low_complexity 1 38 0 224 338 0 0 chr4 180366964 180367035 -21961312 + MIR SINE MIR 5 75 -187 930 221 15 5 chr4 180367037 180367241 -21961106 - MER58 DNA MER1_type -127 214 9 228 362 172 0 chr4 180368181 180368297 -21960050 - L2 LINE L2 0 3272 3137 212 103 51 0 chr4 180368770 180368809 -21959538 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 23 68 0 0 chr4 180368987 180369031 -21959316 + AT_rich Low_complexity Low_complexity 1 44 0 24 0 0 0 chr4 180369257 180369281 -21959066 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr4 180369401 180369445 -21958902 + AT_rich Low_complexity Low_complexity 1 44 0 1693 171 17 20 chr4 180370873 180371166 -21957181 + AluJo SINE Alu 3 294 -18 292 259 67 44 chr4 180371748 180371883 -21956464 - MIR SINE MIR -68 194 57 679 280 81 48 chr4 180372153 180372696 -21955651 - MLT1G LTR MaLR -8 547 1 190 246 33 16 chr4 180373210 180373271 -21955076 + MIR SINE MIR 201 262 0 215 170 0 19 chr4 180373615 180373668 -21954679 + (TA)n Simple_repeat Simple_repeat 2 53 0 221 179 0 18 chr4 180374429 180374485 -21953862 + (TA)n Simple_repeat Simple_repeat 1 55 0 21 0 0 0 chr4 180374882 180374903 -21953444 + AT_rich Low_complexity Low_complexity 1 21 0 2974 23 0 3 chr4 180374938 180375288 -21953059 - L1PA5 LINE L1 -5 6149 5801 196 346 15 60 chr4 180375880 180376013 -21952334 + L2 LINE L2 1851 1977 -1337 5809 187 36 52 chr4 180376033 180377548 -21950799 - L1 LINE L1 -2281 3865 2376 4597 113 25 8 chr4 180377543 180378378 -21949969 - L1PA14 LINE L1 -17 6144 5255 * 240 296 0 0 chr4 180378707 180378761 -21949586 - L2 LINE L2 0 3272 3219 715 152 41 28 chr4 180379439 180379584 -21948763 - MER46A DNA MER2_type -2 234 88 569 226 118 49 chr4 180379885 180380089 -21948258 + MER58A DNA MER1_type 6 223 -1 24 85 0 0 chr4 180380253 180380312 -21948035 + AT_rich Low_complexity Low_complexity 1 59 0 241 219 94 31 chr4 180380896 180380992 -21947355 + L2 LINE L2 3151 3252 -61 274 350 8 25 chr4 180381111 180381231 -21947116 + MIR SINE MIR 108 225 -37 230 140 100 0 chr4 180382156 180382206 -21946141 - LTR41 LTR ERVL -713 60 6 473 269 107 7 chr4 180382392 180382541 -21945806 + MER5A DNA MER1_type 22 185 -4 2273 75 3 10 chr4 180382543 180382851 -21945496 + AluY SINE Alu 1 306 -5 26 0 0 0 chr4 180382956 180382982 -21945365 + AT_rich Low_complexity Low_complexity 1 26 0 25 51 0 0 chr4 180383236 180383275 -21945072 + AT_rich Low_complexity Low_complexity 1 39 0 413 332 39 32 chr4 180383292 180383572 -21944775 - L1MC4 LINE L1 -1056 6986 6705 3899 140 51 56 chr4 180383665 180384486 -21943861 - Tigger3b DNA MER2_type -407 824 8 396 0 0 0 chr4 180384803 180384847 -21943500 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2092 110 0 14 chr4 180384955 180385236 -21943111 - AluSc SINE Alu -32 277 1 1117 251 68 26 chr4 180385409 180385760 -21942587 + LTR40b LTR ERVL 65 430 -32 2062 131 0 0 chr4 180385940 180386254 -21942093 - AluSx SINE Alu 0 314 1 346 295 52 23 chr4 180386573 180386746 -21941601 + MER5B DNA MER1_type 1 178 0 269 359 16 39 chr4 180386755 180386883 -21941464 + MIR SINE MIR 2 126 -136 1359 180 29 25 chr4 180386912 180387190 -21941157 + AluJo SINE Alu 21 299 -13 2313 78 14 0 chr4 180387311 180387605 -21940742 + AluSp SINE Alu 1 298 -15 21 0 0 0 chr4 180387945 180387966 -21940381 + AT_rich Low_complexity Low_complexity 1 21 0 204 369 62 0 chr4 180388344 180388474 -21939873 - MIR3 SINE MIR -32 176 39 317 228 11 22 chr4 180389768 180389860 -21938487 + LTR33 LTR ERVL 410 500 -21 514 209 11 23 chr4 180389861 180390038 -21938309 + CT-rich Low_complexity Low_complexity 6 180 0 781 180 12 0 chr4 180390070 180390242 -21938105 + CT-rich Low_complexity Low_complexity 3 176 0 1902 112 52 36 chr4 180390380 180390720 -21937627 - AluY SINE Alu 0 311 1 1883 90 78 4 chr4 180390722 180390990 -21937357 - AluSx SINE Alu -18 294 7 1344 227 65 16 chr4 180390991 180391361 -21936986 - MLT2B3 LTR ERVL -77 438 3 224 284 53 0 chr4 180391364 180391459 -21936888 + MIR SINE MIR 160 259 -3 22 0 0 0 chr4 180391484 180391506 -21936841 + AT_rich Low_complexity Low_complexity 1 22 0 184 253 114 25 chr4 180392247 180392326 -21936021 + L2 LINE L2 450 535 -2779 * 393 369 159 19 chr4 180392298 180392770 -21935577 + L2 LINE L2 887 1424 -1890 5348 259 62 33 chr4 180392989 180394793 -21933554 + L1MDa LINE L1 16 1871 -4669 637 283 100 62 chr4 180395296 180395954 -21932393 + LTR50 LTR ERVL 13 782 -13 960 143 13 0 chr4 180395954 180396108 -21932239 - AluSg/x SINE Alu -20 292 137 759 129 0 0 chr4 180396108 180396224 -21932123 + AluSq/x SINE Alu 9 124 -189 467 259 131 54 chr4 180396283 180396489 -21931858 - MER61D LTR ERV1 -10 491 340 892 248 41 21 chr4 180396497 180396787 -21931560 - LTR28 LTR ERV1 -676 344 1 23 54 0 0 chr4 180397347 180397384 -21930963 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 180397440 180397475 -21930872 + AT_rich Low_complexity Low_complexity 1 35 0 299 317 48 13 chr4 180397592 180397822 -21930525 + L1MDa LINE L1 2509 2746 -3794 563 209 9 0 chr4 180397902 180398040 -21930307 + FLAM_A SINE Alu 1 139 0 409 217 9 17 chr4 180399759 180400110 -21928237 + (TA)n Simple_repeat Simple_repeat 1 347 0 3606 77 2 10 chr4 180400190 180400673 -21927674 - L1PA8 LINE L1 -3 6169 5691 447 237 28 96 chr4 180400782 180400959 -21927388 - MER20 DNA MER1_type -43 176 12 288 0 0 0 chr4 180401222 180401254 -21927093 + (CA)n Simple_repeat Simple_repeat 2 33 0 543 296 40 88 chr4 180401615 180402136 -21926211 + L1MDa LINE L1 2835 3330 -3210 213 177 51 13 chr4 180402136 180402215 -21926132 + (TTATA)n Simple_repeat Simple_repeat 5 86 0 * 230 172 16 31 chr4 180402165 180402229 -21926118 + (TATAA)n Simple_repeat Simple_repeat 5 67 0 322 257 60 44 chr4 180402229 180402412 -21925935 + L1MDa LINE L1 3331 3516 -3024 664 269 19 14 chr4 180402763 180402975 -21925372 - L1 LINE L1 -978 5168 4956 1623 152 0 44 chr4 180403006 180403303 -21925044 + MER1B DNA MER1_type 56 339 0 307 227 30 0 chr4 180403309 180403375 -21924972 - L1 LINE L1 -1180 4966 4899 223 154 0 0 chr4 180403656 180403695 -21924652 + T-rich Low_complexity Low_complexity 2 40 0 195 272 11 98 chr4 180404345 180404437 -21923910 - L3 LINE CR1 -949 628 545 34 24 0 0 chr4 180405554 180405595 -21922752 + AT_rich Low_complexity Low_complexity 1 41 0 234 330 27 0 chr4 180405771 180405883 -21922464 - L1MEc LINE L1 -2445 3770 3656 2424 64 0 7 chr4 180406239 180406537 -21921810 - AluY SINE Alu 0 311 16 210 247 49 37 chr4 180406978 180407059 -21921288 + MIR SINE MIR 75 156 -106 25 31 0 0 chr4 180407721 180407753 -21920594 + AT_rich Low_complexity Low_complexity 1 32 0 731 311 44 3 chr4 180407787 180408150 -21920197 - L1MEc LINE L1 -3439 2776 2399 5755 97 25 7 chr4 180408151 180409029 -21919318 - L1P LINE L1 -743 5403 4510 * 10762 97 49 6 chr4 180409022 180410664 -21917683 - L1P LINE L1 -2212 3934 2221 293 197 33 0 chr4 180410665 180410726 -21917621 - L1P3 LINE L1 -6176 285 223 423 311 34 17 chr4 180410734 180410911 -21917436 - L1MEc LINE L1 -6180 216 37 314 161 0 18 chr4 180411196 180411252 -21917095 + LTR8-int LTR ERV1 4952 5006 -3114 * 8552 177 69 36 chr4 180411251 180413495 -21914852 + LTR8-int LTR ERV1 3590 5790 -541 1120 218 51 17 chr4 180413532 180413850 -21914497 + LTR8-int LTR ERV1 4600 6213 -118 1062 209 47 142 chr4 180414264 180414599 -21913748 + LTR8 LTR ERV1 1 289 -402 1842 152 7 3 chr4 180414599 180414888 -21913459 + AluSx SINE Alu 1 290 -22 1062 209 47 142 chr4 180414888 180414974 -21913373 + LTR8 LTR ERV1 289 382 -309 553 255 137 0 chr4 180414998 180415151 -21913196 + FRAM SINE Alu 1 174 -2 485 218 48 103 chr4 180415155 180415368 -21912979 + LTR8A LTR ERV1 403 720 -7 255 31 0 0 chr4 180415802 180415834 -21912513 + (CA)n Simple_repeat Simple_repeat 2 33 0 2490 177 113 7 chr4 180416289 180416827 -21911520 + LTR49 LTR ERV1 1 595 0 4947 85 5 0 chr4 180418693 180419350 -21908997 - PABL_A LTR ERV1 0 660 1 31 26 0 0 chr4 180419762 180419800 -21908547 + AT_rich Low_complexity Low_complexity 1 38 0 236 285 24 8 chr4 180420380 180420503 -21907844 + (TA)n Simple_repeat Simple_repeat 2 126 0 6014 149 39 8 chr4 180420598 180422496 -21905851 - L1MA3 LINE L1 0 6305 4341 26 0 0 0 chr4 180423314 180423340 -21905007 + AT_rich Low_complexity Low_complexity 1 26 0 903 219 118 90 chr4 180423380 180423737 -21904610 + LTR8 LTR ERV1 9 375 -316 649 229 11 45 chr4 180423768 180423947 -21904400 + FRAM SINE Alu 1 173 -3 659 267 43 51 chr4 180423949 180424204 -21904143 + LTR8 LTR ERV1 382 634 -57 571 290 78 16 chr4 180424274 180424467 -21903880 + HUERS-P1 LTR ERV1 2 206 -6057 2094 252 50 29 chr4 180424546 180425407 -21902940 + HUERS-P1 LTR ERV1 449 1193 -4753 1249 228 42 6 chr4 180425405 180425704 -21902643 + MER57-int LTR ERV1 996 1874 -3006 * 1798 219 105 125 chr4 180425714 180425935 -21902412 + MER57-int LTR ERV1 751 975 -4148 2158 75 46 0 chr4 180425935 180426216 -21902131 - AluY SINE Alu -17 294 1 1798 219 105 125 chr4 180426216 180426581 -21901766 + MER57-int LTR ERV1 975 658 -4465 2284 127 8 22 chr4 180426581 180426950 -21901397 + THE1B LTR MaLR 1 364 0 1798 219 105 125 chr4 180426950 180427336 -21901011 + MER57-int LTR ERV1 657 1049 -4074 613 218 27 7 chr4 180427385 180427532 -21900815 + MER57-int LTR ERV1 1833 1982 -4616 596 315 62 56 chr4 180427651 180428149 -21900198 + ERVL LTR ERVL 2589 3089 -2565 737 364 42 15 chr4 180428175 180428582 -21899765 + ERVL LTR ERVL 4493 4910 -854 538 147 21 11 chr4 180428591 180428686 -21899661 + MER4A LTR ERV1 3 98 -566 1615 158 3 77 chr4 180428686 180429059 -21899288 + MER4A LTR ERV1 261 664 0 518 301 152 32 chr4 180429059 180429467 -21898880 + ERVL LTR ERVL 4919 5375 -389 305 287 75 41 chr4 180429481 180429666 -21898681 - L2 LINE L2 -274 2998 2808 406 341 114 19 chr4 180429671 180430032 -21898315 + L1MC4a LINE L1 5503 5897 -1911 226 240 0 0 chr4 180430045 180430095 -21898252 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 28 71 0 0 chr4 180430202 180430258 -21898089 + AT_rich Low_complexity Low_complexity 1 56 0 180 158 0 0 chr4 180430373 180430411 -21897936 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 290 228 0 22 chr4 180430612 180430704 -21897643 - L1MC4 LINE L1 -1339 6703 6614 345 125 0 0 chr4 180430732 180430788 -21897559 + (TG)n Simple_repeat Simple_repeat 1 56 0 1903 119 48 7 chr4 180430906 180431200 -21897147 + AluSq SINE Alu 1 306 -7 1317 263 89 44 chr4 180432789 180433386 -21894961 + MER97c DNA MER1_type? 1 624 -466 805 228 5 22 chr4 180433388 180433572 -21894775 + AluJo SINE Alu 7 187 -125 857 239 66 7 chr4 180433605 180433877 -21894470 + MER97a DNA MER1_type? 606 893 -1 2155 121 0 0 chr4 180434260 180434557 -21893790 + AluSc SINE Alu 1 297 -12 26 0 0 0 chr4 180434738 180434764 -21893583 + AT_rich Low_complexity Low_complexity 1 26 0 946 196 78 0 chr4 180435973 180436177 -21892170 + L1MCa LINE L1 97 316 -6110 1003 163 30 5 chr4 180436300 180436503 -21891844 + L1MB2 LINE L1 5931 6138 -33 660 325 68 52 chr4 180436661 180437088 -21891259 - L2 LINE L2 -1179 2135 1702 6185 235 63 47 chr4 180437111 180440398 -21887949 - L1MD1 LINE L1 0 6636 3402 3251 166 64 10 chr4 180440398 180441073 -21887274 - L1PB4 LINE L1 0 6156 5446 6185 235 63 47 chr4 180441073 180442160 -21886187 - L1MD1 LINE L1 -3234 3402 2193 534 0 0 0 chr4 180442160 180442223 -21886124 + L1PA3 LINE L1 6090 6152 -3 6185 235 63 47 chr4 180442223 180442417 -21885930 - L1MD1 LINE L1 -4443 2193 2004 242 28 0 28 chr4 180442900 180442936 -21885411 + (TA)n Simple_repeat Simple_repeat 2 36 0 355 263 32 6 chr4 180443930 180444086 -21884261 - MER114 LTR ERV 0 648 489 1465 211 18 0 chr4 180444089 180444374 -21883973 + MER47B DNA MER2_type 129 418 0 2325 87 0 10 chr4 180444796 180445108 -21883239 - AluY SINE Alu -2 309 1 12680 152 48 11 chr4 180445483 180447814 -21880533 + Tigger1 DNA MER2_type 2 2418 0 342 0 0 0 chr4 180448137 180448175 -21880172 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr4 180448651 180448672 -21879675 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr4 180449179 180449210 -21879137 + AT_rich Low_complexity Low_complexity 1 31 0 2265 220 69 32 chr4 180449663 180450372 -21877975 - Charlie1a DNA MER1_type -629 826 92 266 300 118 0 chr4 180450377 180450487 -21877860 - Charlie1a DNA MER1_type -1327 128 6 346 252 200 19 chr4 180450789 180450944 -21877403 + MER5A DNA MER1_type 4 186 -3 41 21 0 0 chr4 180452373 180452421 -21875926 + AT_rich Low_complexity Low_complexity 1 48 0 288 0 0 0 chr4 180452484 180452516 -21875831 + (TG)n Simple_repeat Simple_repeat 2 33 0 181 311 37 73 chr4 180452875 180453039 -21875308 + MER5A DNA MER1_type 1 158 -31 * 297 279 0 23 chr4 180452974 180453060 -21875287 - MER5A DNA MER1_type -84 105 22 405 0 0 0 chr4 180453509 180453554 -21874793 + (TC)n Simple_repeat Simple_repeat 2 46 0 207 176 0 0 chr4 180454315 180454349 -21873998 + (TTG)n Simple_repeat Simple_repeat 2 35 0 261 0 0 0 chr4 180454986 180455015 -21873332 + (TG)n Simple_repeat Simple_repeat 1 29 0 471 147 0 32 chr4 180456625 180456720 -21871627 + L1MB8 LINE L1 6087 6178 0 324 83 0 0 chr4 180457523 180457571 -21870776 + (TA)n Simple_repeat Simple_repeat 1 48 0 404 143 43 0 chr4 180457574 180457644 -21870703 - MADE1 DNA Mariner -7 73 1 224 389 62 0 chr4 180457953 180458066 -21870281 - L2 LINE L2 -31 3241 3122 238 178 22 0 chr4 180458359 180458404 -21869943 + L1MA7 LINE L1 6060 6105 -186 294 306 91 0 chr4 180459735 180459856 -21868491 - MIR SINE MIR -64 198 67 941 224 20 87 chr4 180460986 180461240 -21867107 - MER8 DNA MER2_type 0 239 3 2214 87 0 20 chr4 180462575 180462874 -21865473 - AluSc SINE Alu -16 293 1 219 77 39 39 chr4 180462883 180462935 -21865412 + CT-rich Low_complexity Low_complexity 1 52 0 386 339 83 35 chr4 180465015 180465245 -21863102 - MIR SINE MIR -1 261 21 384 314 115 67 chr4 180465340 180465713 -21862634 + L2 LINE L2 2922 3312 -1 228 35 0 0 chr4 180466452 180466481 -21861866 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2096 93 7 0 chr4 180466483 180466762 -21861585 - AluSx SINE Alu -31 281 1 238 284 49 0 chr4 180466923 180467004 -21861343 + L1MC4 LINE L1 6615 6699 -1343 * 249 203 0 16 chr4 180466980 180467044 -21861303 - L1MC4 LINE L1 -1339 6703 6641 25 31 0 0 chr4 180467153 180467185 -21861162 + AT_rich Low_complexity Low_complexity 1 32 0 23 97 0 0 chr4 180467422 180467494 -21860853 + AT_rich Low_complexity Low_complexity 1 72 0 22 0 0 0 chr4 180518352 180518374 -21809973 + AT_rich Low_complexity Low_complexity 1 22 0 224 284 53 0 chr4 180518399 180518494 -21809853 - MIR SINE MIR -3 259 160 1344 227 65 16 chr4 180518497 180518867 -21809480 + MLT2B3 LTR ERVL 3 438 -77 1883 90 78 4 chr4 180518868 180519136 -21809211 + AluSx SINE Alu 7 294 -18 1867 111 52 39 chr4 180519138 180519479 -21808868 + AluY SINE Alu 1 311 0 781 199 13 10 chr4 180519617 180519931 -21808416 + GA-rich Low_complexity Low_complexity 1 315 0 605 228 4 0 chr4 180520045 180520285 -21808062 + GA-rich Low_complexity Low_complexity 1 241 0 468 282 87 70 chr4 180520286 180520644 -21807703 - LTR33 LTR ERVL -21 500 137 274 350 8 25 chr4 180521282 180521402 -21806945 - MIR SINE MIR -37 225 108 241 219 94 31 chr4 180521521 180521617 -21806730 - L2 LINE L2 -61 3252 3151 569 226 118 49 chr4 180522098 180522302 -21806045 + MER58A DNA MER1_type 6 223 -1 24 85 0 0 chr4 180522466 180522525 -21805822 + AT_rich Low_complexity Low_complexity 1 59 0 222 206 0 0 chr4 180523228 180523296 -21805051 + (TA)n Simple_repeat Simple_repeat 2 69 0 262 245 0 43 chr4 180523302 180523396 -21804951 + L1MC4 LINE L1 6614 6703 -1339 243 157 0 0 chr4 180523401 180523452 -21804895 + (TA)n Simple_repeat Simple_repeat 1 51 0 324 83 0 0 chr4 180523512 180523560 -21804787 + (TA)n Simple_repeat Simple_repeat 1 48 0 404 143 43 0 chr4 180523563 180523633 -21804714 - MADE1 DNA Mariner -7 73 1 224 389 62 0 chr4 180523942 180524055 -21804292 - L2 LINE L2 -31 3241 3122 238 178 22 0 chr4 180524348 180524393 -21803954 + L1MA7 LINE L1 6060 6105 -186 294 306 91 0 chr4 180525724 180525845 -21802502 - MIR SINE MIR -64 198 67 1754 242 22 13 chr4 180527058 180527516 -21800831 + L1MC1 LINE L1 5859 6320 -13 241 336 41 8 chr4 180527520 180527642 -21800705 + MIR SINE MIR 134 259 -3 2360 84 0 0 chr4 180527971 180528281 -21800066 - AluY SINE Alu -1 310 1 2542 55 0 0 chr4 180529033 180529344 -21799003 - AluY SINE Alu 0 311 1 310 355 87 22 chr4 180529412 180529643 -21798704 - MIR SINE MIR -13 249 4 2083 200 41 0 chr4 180530037 180530452 -21797895 - MSTB1 LTR MaLR 0 432 1 29 78 0 0 chr4 180531033 180531097 -21797250 + AT_rich Low_complexity Low_complexity 1 64 0 1468 219 60 48 chr4 180533653 180534151 -21794196 + MLT1D LTR MaLR 2 505 0 24 53 0 0 chr4 180534804 180534842 -21793505 + AT_rich Low_complexity Low_complexity 1 38 0 224 338 0 0 chr4 180535016 180535087 -21793260 + MIR SINE MIR 5 75 -187 930 221 15 5 chr4 180535089 180535293 -21793054 - MER58 DNA MER1_type -2206 214 9 228 362 172 0 chr4 180536232 180536348 -21791999 - L2 LINE L2 0 3272 3137 212 103 51 0 chr4 180536821 180536860 -21791487 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 23 68 0 0 chr4 180537038 180537082 -21791265 + AT_rich Low_complexity Low_complexity 1 44 0 24 0 0 0 chr4 180537308 180537332 -21791015 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr4 180537452 180537496 -21790851 + AT_rich Low_complexity Low_complexity 1 44 0 1678 174 17 20 chr4 180538924 180539217 -21789130 + AluJo SINE Alu 3 294 -18 292 259 67 44 chr4 180539799 180539934 -21788413 - MIR SINE MIR -68 194 57 679 280 81 48 chr4 180540204 180540747 -21787600 - MLT1G LTR MaLR -8 547 1 190 246 33 16 chr4 180541261 180541322 -21787025 + MIR SINE MIR 201 262 0 215 170 0 19 chr4 180541666 180541719 -21786628 + (TA)n Simple_repeat Simple_repeat 2 53 0 221 179 0 18 chr4 180542480 180542536 -21785811 + (TA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr4 180542933 180542954 -21785393 + AT_rich Low_complexity Low_complexity 1 21 0 2954 26 0 3 chr4 180542989 180543339 -21785008 - L1PA5 LINE L1 -5 6149 5801 196 346 15 60 chr4 180543931 180544064 -21784283 + L2 LINE L2 1851 1977 -1337 4738 185 41 61 chr4 180544084 180545388 -21782959 - L1 LINE L1 -2281 3865 2587 460 67 0 0 chr4 180545853 180545913 -21782434 + L1PA8 LINE L1 5124 5183 -963 5183 108 96 62 chr4 180545913 180547015 -21781332 - MER11A LTR ERVK 0 1266 8 6693 74 17 7 chr4 180547015 180547998 -21780349 + L1PA8 LINE L1 5169 6169 -3 409 217 9 17 chr4 180548078 180548429 -21779918 + (TA)n Simple_repeat Simple_repeat 1 347 0 562 209 9 0 chr4 180550148 180550286 -21778061 - FLAM_A SINE Alu 0 139 1 299 317 48 13 chr4 180550366 180550596 -21777751 - L1 LINE L1 -3794 2352 2115 21 57 0 0 chr4 180550713 180550748 -21777599 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr4 180550804 180550841 -21777506 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr4 180551789 180551815 -21776532 + AT_rich Low_complexity Low_complexity 1 26 0 903 219 118 90 chr4 180551855 180552212 -21776135 + LTR8 LTR ERV1 9 375 -316 649 229 11 45 chr4 180552243 180552422 -21775925 + FRAM SINE Alu 1 173 -3 659 267 43 51 chr4 180552424 180552679 -21775668 + LTR8 LTR ERV1 382 634 -57 571 290 78 16 chr4 180552749 180552942 -21775405 + HUERS-P1 LTR ERV1 2 206 -6057 2094 252 50 29 chr4 180553021 180553882 -21774465 + HUERS-P1 LTR ERV1 449 1193 -4753 1249 228 42 6 chr4 180553880 180554179 -21774168 + HUERS-P1 LTR ERV1 996 1874 -3006 * 216 0 0 0 chr4 180554181 180554205 -21774142 + (TG)n Simple_repeat Simple_repeat 1 24 0 1798 216 111 126 chr4 180554205 180554410 -21773937 + HUERS-P1 LTR ERV1 751 957 -4166 2158 75 46 0 chr4 180554410 180554691 -21773656 - AluY SINE Alu -17 294 1 1798 216 111 126 chr4 180554691 180555056 -21773291 + HUERS-P1 LTR ERV1 957 660 -4463 2284 127 8 22 chr4 180555056 180555425 -21772922 + THE1B LTR MaLR 1 364 0 1798 216 111 126 chr4 180555425 180555811 -21772536 + HUERS-P1 LTR ERV1 659 1049 -4074 613 197 4 213 chr4 180555854 180556103 -21772244 + HUERS-P1 LTR ERV1 1199 1982 -3728 248 274 14 14 chr4 180556103 180556176 -21772171 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 2361 144 51 63 chr4 180556184 180556713 -21771634 + HUERS-P1 LTR ERV1 2780 3552 -2671 406 160 3 0 chr4 180556711 180556792 -21771555 + HUERS-P1 LTR ERV1 4537 4715 -2822 * 314 161 0 18 chr4 180556869 180556925 -21771422 + HUERS-P1 LTR ERV1 4952 5006 -3114 * 8622 177 64 37 chr4 180556924 180559169 -21769178 + HUERS-P1 LTR ERV1 3426 5790 -524 1120 218 51 17 chr4 180559206 180559524 -21768823 + HUERS-P1 LTR ERV1 4600 6213 -118 746 342 52 0 chr4 180559639 180559908 -21768439 + HUERS-P1 LTR ERV1 5950 6232 -31 1062 209 47 142 chr4 180559938 180560273 -21768074 + LTR8 LTR ERV1 1 289 -402 1842 152 7 3 chr4 180560273 180560562 -21767785 + AluSx SINE Alu 1 290 -22 1062 209 47 142 chr4 180560562 180560648 -21767699 + LTR8 LTR ERV1 289 382 -309 553 255 137 0 chr4 180560672 180560825 -21767522 + FRAM SINE Alu 1 174 -2 460 219 85 77 chr4 180560829 180561042 -21767305 + LTR8A LTR ERV1 403 720 -7 255 31 0 0 chr4 180561476 180561508 -21766839 + (CA)n Simple_repeat Simple_repeat 2 33 0 2490 177 113 7 chr4 180561963 180562501 -21765846 + LTR49 LTR ERV1 1 595 0 26 0 0 0 chr4 180563052 180563078 -21765269 + AT_rich Low_complexity Low_complexity 1 26 0 2273 75 3 10 chr4 180563183 180563491 -21764856 - AluY SINE Alu -5 306 1 473 269 107 7 chr4 180563493 180563642 -21764705 - MER5A DNA MER1_type -4 185 22 230 140 100 0 chr4 180563828 180563878 -21764469 + LTR41 LTR ERVL 6 60 -713 637 283 100 62 chr4 180564720 180565378 -21762969 + LTR50 LTR ERVL 13 782 -13 960 143 13 0 chr4 180565378 180565532 -21762815 - AluSg/x SINE Alu -20 292 137 759 129 0 0 chr4 180565532 180565648 -21762699 + AluSq/x SINE Alu 9 124 -189 467 259 131 54 chr4 180565707 180565913 -21762434 - MER61D LTR ERV1 -10 491 340 892 248 41 21 chr4 180565921 180566211 -21762136 - LTR28 LTR ERV1 -676 344 1 817 336 53 38 chr4 180566480 180567060 -21761287 + ERVL LTR ERVL 2540 3128 -2636 737 364 42 15 chr4 180567086 180567493 -21760854 + ERVL LTR ERVL 4493 4910 -854 538 147 21 11 chr4 180567502 180567597 -21760750 + MER4A LTR ERV1 3 98 -566 1615 158 3 77 chr4 180567597 180567970 -21760377 + MER4A LTR ERV1 261 664 0 518 301 152 32 chr4 180567970 180568378 -21759969 + ERVL LTR ERVL 4919 5375 -389 305 283 69 35 chr4 180568432 180568577 -21759770 - L2 LINE L2 -356 2957 2808 406 341 114 19 chr4 180568582 180568943 -21759404 + L1MC4a LINE L1 5503 5897 -1911 226 240 0 0 chr4 180568956 180569006 -21759341 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 28 71 0 0 chr4 180569113 180569169 -21759178 + AT_rich Low_complexity Low_complexity 1 56 0 180 158 0 0 chr4 180569284 180569322 -21759025 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 290 228 0 22 chr4 180569523 180569615 -21758732 - L1MC4 LINE L1 -1339 6703 6614 345 125 0 0 chr4 180569643 180569699 -21758648 + (TG)n Simple_repeat Simple_repeat 1 56 0 1903 119 48 7 chr4 180569817 180570111 -21758236 + AluSq SINE Alu 1 306 -7 1317 263 89 44 chr4 180571700 180572297 -21756050 + MER97c DNA MER1_type? 1 624 -466 805 228 5 22 chr4 180572299 180572483 -21755864 + AluJo SINE Alu 7 187 -125 857 239 66 7 chr4 180572516 180572788 -21755559 + MER97a DNA MER1_type? 606 893 -1 2155 121 0 0 chr4 180573171 180573468 -21754879 + AluSc SINE Alu 1 297 -12 26 0 0 0 chr4 180573649 180573675 -21754672 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr4 180575399 180575428 -21752919 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 180575832 180575853 -21752494 + AT_rich Low_complexity Low_complexity 1 21 0 204 369 62 0 chr4 180576231 180576361 -21751986 - MIR3 SINE MIR -32 176 39 21 0 0 0 chr4 180577768 180577789 -21750558 + AT_rich Low_complexity Low_complexity 1 21 0 429 306 46 0 chr4 180578209 180578317 -21750030 - MER8 DNA MER2_type -88 151 39 2214 87 0 20 chr4 180579710 180580009 -21748338 - AluSc SINE Alu -16 293 1 219 77 39 39 chr4 180580018 180580070 -21748277 + CT-rich Low_complexity Low_complexity 1 52 0 386 339 83 35 chr4 180582149 180582379 -21745968 - MIR SINE MIR -1 261 21 390 306 121 72 chr4 180582474 180582847 -21745500 + L2 LINE L2 2922 3312 -1 228 35 0 0 chr4 180583586 180583615 -21744732 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2096 93 7 0 chr4 180583617 180583896 -21744451 - AluSx SINE Alu -31 281 1 238 284 49 0 chr4 180584057 180584138 -21744209 + L1MC4 LINE L1 6615 6699 -1343 * 249 203 0 16 chr4 180584114 180584178 -21744169 - L1MC4 LINE L1 -1339 6703 6641 25 31 0 0 chr4 180584287 180584319 -21744028 + AT_rich Low_complexity Low_complexity 1 32 0 23 97 0 0 chr4 180584556 180584628 -21743719 + AT_rich Low_complexity Low_complexity 1 72 0 452 328 160 25 chr4 180585304 180585703 -21742644 + L2 LINE L2 83 535 -2779 393 369 159 19 chr4 180585675 180586147 -21742200 + L2 LINE L2 887 1424 -1890 * 8120 241 62 43 chr4 180586366 180588497 -21739850 + L1MD1 LINE L1 16 2105 -4531 534 0 0 0 chr4 180588497 180588560 -21739787 - L1PA3 LINE L1 -3 6152 6090 8120 241 62 43 chr4 180588560 180589647 -21738700 + L1MD1 LINE L1 2105 3170 -3466 3251 166 64 10 chr4 180589647 180590322 -21738025 + L1PB4 LINE L1 5446 6156 0 8120 241 62 43 chr4 180590322 180593609 -21734738 + L1MD1 LINE L1 3170 6636 0 660 325 68 52 chr4 180593632 180594059 -21734288 + L2 LINE L2 1702 2135 -1179 1003 163 30 5 chr4 180594217 180594420 -21733927 - L1MB2 LINE L1 -33 6138 5931 1273 208 61 4 chr4 180594543 180594822 -21733525 - L1MCa LINE L1 -6110 316 22 664 269 19 14 chr4 180594826 180595038 -21733309 - L1 LINE L1 -978 5168 4956 1623 152 0 44 chr4 180595069 180595366 -21732981 + MER1B DNA MER1_type 56 339 0 307 227 30 0 chr4 180595372 180595438 -21732909 - L1 LINE L1 -1180 4966 4899 223 154 0 0 chr4 180595719 180595758 -21732589 + T-rich Low_complexity Low_complexity 2 40 0 195 272 11 98 chr4 180596408 180596500 -21731847 - L3 LINE CR1 -949 628 545 34 24 0 0 chr4 180597616 180597657 -21730690 + AT_rich Low_complexity Low_complexity 1 41 0 318 321 27 0 chr4 180597834 180597946 -21730401 - L1MEc LINE L1 -2445 3770 3656 2048 118 0 7 chr4 180598304 180598601 -21729746 - AluY SINE Alu 0 311 17 298 257 60 44 chr4 180599087 180599270 -21729077 - L1MEc LINE L1 -3024 3191 3006 230 172 16 31 chr4 180599270 180599363 -21728984 + (TTATA)n Simple_repeat Simple_repeat 1 91 0 549 284 55 116 chr4 180599363 180600236 -21728111 - L1MEc LINE L1 -3210 3005 2186 288 0 0 0 chr4 180600245 180600277 -21728070 + (TG)n Simple_repeat Simple_repeat 2 33 0 558 230 46 88 chr4 180600540 180600757 -21727590 + MER20 DNA MER1_type 12 219 0 291 397 41 16 chr4 180600854 180601096 -21727251 - MLT1I LTR MaLR -151 258 11 386 282 0 8 chr4 180601507 180601638 -21726709 - L1MEc LINE L1 -5469 927 798 425 291 87 62 chr4 180601671 180601946 -21726401 - L1MEd LINE L1 -5107 1012 731 22 0 0 0 chr4 180602001 180602023 -21726324 + AT_rich Low_complexity Low_complexity 1 22 0 220 321 0 48 chr4 180602999 180603083 -21725264 + MIR SINE MIR 180 259 -3 3664 158 13 3 chr4 180604253 180604880 -21723467 - MER41B LTR ERV1 -2 633 1 25 51 0 0 chr4 180604908 180604947 -21723400 + AT_rich Low_complexity Low_complexity 1 39 0 433 275 0 88 chr4 180605036 180605196 -21723151 + MLT1D LTR MaLR 4 149 -356 348 279 66 42 chr4 180605350 180605679 -21722668 - L1MCa LINE L1 -2947 3479 1167 558 161 14 16 chr4 180605817 180605956 -21722391 + MLT1D LTR MaLR 407 503 -2 590 327 14 23 chr4 180606527 180606747 -21721600 - MIR SINE MIR -3 259 42 272 91 23 0 chr4 180606759 180606803 -21721544 + (TG)n Simple_repeat Simple_repeat 1 45 0 2142 74 67 0 chr4 180607329 180607613 -21720734 - AluY SINE Alu -8 303 1 1574 229 32 68 chr4 180610766 180611089 -21717258 + MLT1D LTR MaLR 27 327 -178 2479 148 19 21 chr4 180611089 180611514 -21716833 - MSTC LTR MaLR 0 428 5 1574 229 32 68 chr4 180611514 180611687 -21716660 + MLT1D LTR MaLR 327 505 0 29 94 0 0 chr4 180611937 180612022 -21716325 + AT_rich Low_complexity Low_complexity 1 85 0 265 278 0 0 chr4 180612591 180612645 -21715702 - MLT1J1 LTR MaLR -296 150 97 1699 183 0 13 chr4 180612872 180613172 -21715175 - AluJb SINE Alu -13 299 4 2225 103 0 10 chr4 180613553 180613854 -21714493 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr4 180613858 180613880 -21714467 + AT_rich Low_complexity Low_complexity 1 22 0 236 136 68 0 chr4 180614571 180614615 -21713732 + L1ME3A LINE L1 6034 6080 -90 21 36 0 0 chr4 180614658 180614686 -21713661 + AT_rich Low_complexity Low_complexity 1 28 0 1748 122 199 6 chr4 180614813 180615149 -21713198 - MER57A LTR ERV1 0 403 3 553 340 58 46 chr4 180616118 180616512 -21711835 + HAL1b LINE L1 39 437 -911 26 30 0 0 chr4 180616551 180616584 -21711763 + AT_rich Low_complexity Low_complexity 1 33 0 21 82 0 0 chr4 180617299 180617348 -21710999 + AT_rich Low_complexity Low_complexity 1 49 0 1776 152 69 26 chr4 180619476 180619825 -21708522 - THE1B LTR MaLR 0 364 1 429 301 20 13 chr4 180619966 180620119 -21708228 + MER70-int LTR ERVL 418 571 -4452 2090 280 79 32 chr4 180621021 180621768 -21706579 + MER70-int LTR ERVL 567 1348 -3675 1738 336 48 30 chr4 180622158 180623232 -21705115 + MER70-int LTR ERVL 2019 3745 -1785 1814 322 24 2 chr4 180623474 180624015 -21704332 + MER70-int LTR ERVL 2974 3526 -1497 773 311 57 17 chr4 180625073 180625427 -21702920 - MER93a LTR ERV1 0 402 35 256 274 42 11 chr4 180625979 180626074 -21702273 - HUERS-P3 LTR ERV1 -450 8469 8372 670 144 36 0 chr4 180626351 180626462 -21701885 - AluSg/x SINE Alu -15 295 181 1545 82 0 14 chr4 180626475 180626682 -21701665 - AluSq SINE Alu -94 219 16 408 308 8 0 chr4 180626713 180626830 -21701517 - MIR SINE MIR -108 154 37 252 324 15 59 chr4 180628502 180628638 -21699709 - MIR SINE MIR -124 138 9 210 37 0 0 chr4 180629564 180629591 -21698756 + (TTTTTA)n Simple_repeat Simple_repeat 3 29 0 236 0 0 0 chr4 180629591 180629623 -21698724 + L1PA2 LINE L1 6118 6149 -6 1763 139 37 4 chr4 180629844 180630117 -21698230 + AluSx SINE Alu 1 282 -30 246 62 0 0 chr4 180630120 180630152 -21698195 + (CA)n Simple_repeat Simple_repeat 1 32 0 1438 182 64 7 chr4 180630218 180630498 -21697849 + AluJo SINE Alu 1 296 -16 348 189 0 85 chr4 180631006 180631112 -21697235 - L1PB4 LINE L1 0 6156 6060 * 580 246 48 37 chr4 180631104 180631291 -21697056 - L1M2 LINE L1 -6656 193 5 2678 0 0 7 chr4 180631416 180631708 -21696639 + AluYa5 SINE Alu 1 290 -21 2213 98 0 7 chr4 180632694 180632999 -21695348 + AluY SINE Alu 5 307 -4 1958 321 51 57 chr4 180633609 180633833 -21694514 + L2 LINE L2 1933 2157 -1156 2575 45 0 13 chr4 180633833 180634141 -21694206 - AluY SINE Alu -7 304 1 1958 321 51 57 chr4 180634141 180635048 -21693299 + L2 LINE L2 2157 3056 -257 2309 67 0 3 chr4 180635048 180635356 -21692991 - AluY SINE Alu 0 307 1 1958 321 51 57 chr4 180635356 180635606 -21692741 + L2 LINE L2 3056 3306 -7 228 350 23 75 chr4 180635652 180635866 -21692481 - L2 LINE L2 -2 3311 3109 204 331 158 72 chr4 180635872 180636219 -21692128 - L2 LINE L2 -484 2830 2454 207 217 0 17 chr4 180636758 180636818 -21691529 + (TA)n Simple_repeat Simple_repeat 1 59 0 243 307 0 0 chr4 180637027 180637102 -21691245 - L1MC4 LINE L1 -1337 6705 6631 2422 233 54 33 chr4 180637399 180638104 -21690243 - MER72 LTR ERV1 -2 720 1 2231 109 0 6 chr4 180638315 180638626 -21689721 + AluSx SINE Alu 1 309 -3 731 217 152 20 chr4 180638660 180638858 -21689489 + MER58A DNA MER1_type 1 224 0 313 136 0 45 chr4 180639533 180639599 -21688748 - MLT2B1 LTR ERVL 0 520 458 718 174 30 11 chr4 180639602 180639879 -21688468 + (TGGA)n Simple_repeat Simple_repeat 1 282 0 2415 215 52 8 chr4 180639886 180640384 -21687963 - MLT2B3 LTR ERVL -34 520 1 1053 277 100 48 chr4 180640389 180640847 -21687500 - MLT2B1 LTR ERVL -38 482 1 611 305 61 7 chr4 180641458 180641813 -21686534 - L2 LINE L2 -250 3063 2636 923 228 58 79 chr4 180642899 180643277 -21685070 - MLT1A2 LTR MaLR -4 370 1 1585 233 72 5 chr4 180643283 180643673 -21684674 - MLT1A1-int LTR MaLR -7 1728 1313 277 261 0 14 chr4 180643745 180643814 -21684533 - MLT1A1-int LTR MaLR -992 743 676 354 215 194 8 chr4 180643924 180644051 -21684296 - MLT1A1-int LTR MaLR -664 707 549 1144 109 223 50 chr4 180644054 180644292 -21684055 - AluSx SINE Alu -2 310 32 686 262 0 18 chr4 180644337 180644501 -21683846 - MLT1A1-int LTR MaLR -1475 260 100 2662 210 12 62 chr4 180644503 180645079 -21683268 - MLT2B3 LTR ERVL -2 552 6 495 192 50 0 chr4 180645084 180645183 -21683164 - MLT1A1-int LTR MaLR -1631 104 1 1231 215 80 50 chr4 180645183 180645522 -21682825 - MLT1A1 LTR MaLR 0 365 17 520 249 80 98 chr4 180645933 180646158 -21682189 - MIR SINE MIR -5 257 37 923 190 87 105 chr4 180646593 180646972 -21681375 - MLT1A2 LTR MaLR 0 374 5 464 306 44 44 chr4 180647138 180647390 -21680957 + L3 LINE CR1 767 1018 -559 1035 231 123 98 chr4 180647596 180647746 -21680601 - MER69 DNA AcHobo -13 2513 2368 1403 199 14 31 chr4 180647746 180648038 -21680309 - AluJo SINE Alu -25 287 1 1035 231 123 98 chr4 180648038 180648533 -21679814 - MER69 DNA AcHobo -158 2368 1840 2193 147 25 0 chr4 180648533 180648888 -21679459 - THE1B LTR MaLR 0 364 1 1035 231 123 98 chr4 180648888 180649081 -21679266 - MER69 DNA AcHobo -686 1840 1653 1016 275 42 75 chr4 180649118 180649345 -21679002 - MER69 DNA AcHobo -1851 675 465 2194 109 0 3 chr4 180649345 180649657 -21678690 + AluY SINE Alu 1 311 0 1016 275 42 75 chr4 180649657 180649829 -21678518 - MER69 DNA AcHobo -2061 465 289 675 278 124 0 chr4 180650098 180650307 -21678040 - MIR SINE MIR 0 262 28 232 279 39 19 chr4 180650995 180651099 -21677248 - L1MC4 LINE L1 -1337 6705 6600 310 214 14 57 chr4 180651868 180651938 -21676409 - MIR SINE MIR -131 131 65 23 33 0 0 chr4 180652008 180652038 -21676309 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr4 180652054 180652083 -21676264 + AT_rich Low_complexity Low_complexity 1 29 0 1306 166 0 0 chr4 180652385 180652596 -21675751 - AluJb SINE Alu -15 297 87 4192 240 93 49 chr4 180652618 180653013 -21675334 + L1MC3 LINE L1 6097 6473 -1312 1981 113 0 18 chr4 180653013 180653320 -21675027 - AluSg1 SINE Alu 0 302 1 4192 240 93 49 chr4 180653320 180654541 -21673806 + L1MC3 LINE L1 6473 7785 0 780 248 73 46 chr4 180655354 180655681 -21672666 - MER46C DNA MER2_type -1 337 2 242 279 44 84 chr4 180656272 180656498 -21671849 - L2 LINE L2 -145 3168 2952 1039 247 44 39 chr4 180656527 180656911 -21671436 - L1M4 LINE L1 -1012 5134 4749 1074 283 42 25 chr4 180657094 180657589 -21670758 - L1MDa LINE L1 -4428 1787 1315 1832 116 97 111 chr4 180657595 180657677 -21670670 + MSTC LTR MaLR 4 86 -342 594 210 224 0 chr4 180657677 180657820 -21670527 + FAM SINE Alu 1 175 0 1832 116 97 111 chr4 180657820 180658168 -21670179 + MSTC LTR MaLR 86 428 0 3198 287 50 24 chr4 180658198 180659449 -21668898 - L1MDa LINE L1 -5063 1333 50 252 0 0 0 chr4 180659548 180659576 -21668771 + (T)n Simple_repeat Simple_repeat 1 28 0 195 42 0 0 chr4 180659907 180659931 -21668416 + (TC)n Simple_repeat Simple_repeat 1 24 0 4037 169 111 9 chr4 180659978 180660782 -21667565 + MER21A LTR ERV1 16 901 -30 192 77 0 0 chr4 180661099 180661125 -21667222 + (TA)n Simple_repeat Simple_repeat 2 27 0 2479 209 45 15 chr4 180661577 180661622 -21666725 - MLT2B3 LTR ERVL 0 554 512 541 0 29 0 chr4 180661622 180661691 -21666656 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 2479 209 45 15 chr4 180661691 180662181 -21666166 - MLT2B3 LTR ERVL -42 512 3 1915 160 0 7 chr4 180662345 180662652 -21665695 + AluJb SINE Alu 1 305 -7 836 218 10 15 chr4 180662756 180662941 -21665406 - L1 LINE L1 -3581 3984 3799 5344 103 9 11 chr4 180662941 180664504 -21663843 - L1PA14 LINE L1 -17 6144 4528 1856 178 4 13 chr4 180664504 180665107 -21663240 - L1P4 LINE L1 -591 5574 4979 * 5843 236 89 11 chr4 180665105 180667461 -21660886 - L1PA15-16 LINE L1 -2950 4634 2094 644 340 22 32 chr4 180667467 180667873 -21660474 - L1PA15-16 LINE L1 -7179 402 1 5326 231 37 43 chr4 180667889 180669856 -21658491 - L1 LINE L1 -4898 2667 2 1933 148 0 7 chr4 180669883 180670187 -21658160 - AluSx SINE Alu -10 302 1 5611 182 15 24 chr4 180670190 180671010 -21657337 + L1MC1 LINE L1 5083 5892 -441 2194 170 44 17 chr4 180671010 180671421 -21656926 + MSTB LTR MaLR 1 422 -4 5611 182 15 24 chr4 180671421 180671843 -21656504 + L1MC1 LINE L1 5892 6316 -17 435 309 20 20 chr4 180671866 180672015 -21656332 + MIR SINE MIR 83 231 -31 471 221 38 8 chr4 180672092 180672223 -21656124 - MER67D LTR ERV1 0 514 380 12249 189 25 16 chr4 180672310 180676223 -21652124 - L1PB1 LINE L1 0 6151 2205 306 98 0 0 chr4 180676325 180676366 -21651981 + LTR2B LTR ERV1 450 490 0 317 285 55 55 chr4 180676521 180676721 -21651626 - L1MEc LINE L1 -3997 2399 2200 21 36 0 0 chr4 180676755 180676783 -21651564 + AT_rich Low_complexity Low_complexity 1 28 0 1496 255 50 41 chr4 180677176 180678165 -21650182 - L1ME1 LINE L1 -176 5990 4998 1431 191 13 80 chr4 180680448 180680834 -21647513 - MLT1B LTR MaLR -46 344 1 1133 254 24 6 chr4 180680841 180681132 -21647215 + L1MC5 LINE L1 7698 7956 -24 4958 213 28 14 chr4 180681699 180682393 -21645954 - L1MA5 LINE L1 0 7002 6319 1992 110 0 0 chr4 180682393 180682675 -21645672 - AluSg SINE Alu -2 308 27 4958 213 28 14 chr4 180682675 180684185 -21644162 - L1MA5 LINE L1 -683 6319 4772 1160 193 78 46 chr4 180684193 180684563 -21643784 + MSTA LTR MaLR 4 428 0 6944 215 29 51 chr4 180684573 180688029 -21640318 - L1MA5 LINE L1 -2106 4742 1368 1936 223 46 0 chr4 180688077 180688490 -21639857 - MSTB1 LTR MaLR 0 432 1 1967 139 0 32 chr4 180689549 180689858 -21638489 + AluSx SINE Alu 1 299 -13 23 33 0 0 chr4 180690701 180690731 -21637616 + AT_rich Low_complexity Low_complexity 1 30 0 252 293 19 38 chr4 180691703 180691809 -21636538 + MER20B DNA MER1_type 188 291 -492 629 326 99 5 chr4 180691823 180692044 -21636303 + MIR SINE MIR 17 258 -4 21 0 0 0 chr4 180693239 180693260 -21635087 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr4 180694099 180694125 -21634222 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 207 0 0 0 chr4 180694164 180694187 -21634160 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 734 130 0 0 chr4 180694207 180694315 -21634032 - AluSq/x SINE Alu -204 108 1 27 0 0 26 chr4 180694662 180694682 -21633665 + AT_rich Low_complexity Low_complexity 1 21 -16 1573 115 26 4 chr4 180694682 180694916 -21633431 + AluSq SINE Alu 54 292 -21 27 0 0 26 chr4 180694916 180694933 -21633414 + AT_rich Low_complexity Low_complexity 21 37 0 1230 273 83 5 chr4 180695109 180695519 -21632828 + MER90 LTR ERV1 2 443 -171 420 228 0 0 chr4 180695523 180695602 -21632745 + AluJ/FLAM SINE Alu 6 84 -228 1654 237 44 5 chr4 180695662 180695688 -21632659 - MER89 LTR ERV1 0 559 535 198 0 0 0 chr4 180695688 180695710 -21632637 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 1654 237 44 5 chr4 180695710 180696088 -21632259 - MER89 LTR ERV1 -24 535 139 299 178 10 0 chr4 180696090 180696191 -21632156 + (TA)n Simple_repeat Simple_repeat 1 102 0 436 202 22 0 chr4 180696238 180696327 -21632020 - MER89 LTR ERV1 -468 91 1 297 279 9 24 chr4 180696791 180696894 -21631453 + MER90 LTR ERV1 471 614 0 2137 152 5 24 chr4 180697294 180697676 -21630671 - THE1C LTR MaLR 0 375 1 9080 144 59 3 chr4 180697676 180699173 -21629174 - THE1C-int LTR MaLR 0 1580 1 1347 153 79 95 chr4 180699176 180699396 -21628951 - THE1C LTR MaLR -3 372 159 2078 135 0 0 chr4 180699396 180699699 -21628648 + AluSx SINE Alu 1 303 -9 1347 153 79 95 chr4 180699699 180699856 -21628491 - THE1C LTR MaLR -216 159 1 31 76 0 0 chr4 180700834 180700900 -21627447 + AT_rich Low_complexity Low_complexity 1 66 0 26 50 0 0 chr4 180700956 180700996 -21627351 + AT_rich Low_complexity Low_complexity 1 40 0 1919 156 0 0 chr4 180701117 180701418 -21626929 + AluSx SINE Alu 1 301 -11 300 350 98 0 chr4 180702936 180703079 -21625268 + MIR3 SINE MIR 37 193 -15 23 0 0 0 chr4 180703236 180703259 -21625088 + AT_rich Low_complexity Low_complexity 1 23 0 575 99 132 0 chr4 180703971 180704062 -21624285 + MER39B LTR ERV1 4 106 -547 28 29 0 0 chr4 180704859 180704894 -21623453 + AT_rich Low_complexity Low_complexity 1 35 0 559 310 21 43 chr4 180704939 180705220 -21623127 + L1MDa LINE L1 56 330 -6210 2730 260 44 24 chr4 180705249 180707095 -21621252 - L1MB8 LINE L1 -3 6175 4285 897 286 50 20 chr4 180707914 180708313 -21620034 + L1MDa LINE L1 899 1309 -5234 800 240 108 15 chr4 180708367 180708700 -21619647 + L1MDa LINE L1 1852 2215 -4325 23 33 0 0 chr4 180708783 180708813 -21619534 + AT_rich Low_complexity Low_complexity 1 30 0 1494 266 45 74 chr4 180709631 180709781 -21618566 + Charlie6 DNA MER1_type 253 406 -3094 2407 70 0 0 chr4 180709781 180710079 -21618268 - AluY SINE Alu -13 298 1 1494 266 45 74 chr4 180710079 180710574 -21617773 + Charlie6 DNA MER1_type 406 879 -2621 39 60 0 0 chr4 180710603 180710670 -21617677 + AT_rich Low_complexity Low_complexity 1 67 0 2574 259 56 18 chr4 180710816 180711638 -21616709 + Charlie6 DNA MER1_type 1646 2498 -1002 2064 236 55 52 chr4 180711657 180712414 -21615933 + Charlie6 DNA MER1_type 2612 3374 -126 2567 83 3 25 chr4 180712414 180712777 -21615570 - THE1A LTR MaLR 0 355 1 2064 236 55 52 chr4 180712777 180712905 -21615442 + Charlie6 DNA MER1_type 3374 3500 0 668 134 0 25 chr4 180713143 180713262 -21615085 - THE1A LTR MaLR -239 116 1 279 273 11 11 chr4 180713302 180713390 -21614957 + Charlie6 DNA MER1_type 3413 3500 0 430 289 97 27 chr4 180713424 180713722 -21614625 + L1ME2 LINE L1 5836 6154 -10 31 0 0 0 chr4 180713999 180714030 -21614317 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr4 180714209 180714244 -21614103 + AT_rich Low_complexity Low_complexity 1 35 0 33 43 0 0 chr4 180716305 180716352 -21611995 + AT_rich Low_complexity Low_complexity 1 47 0 30 0 0 0 chr4 180716599 180716629 -21611718 + AT_rich Low_complexity Low_complexity 1 30 0 356 292 185 11 chr4 180716675 180716935 -21611412 - L1MC/D LINE L1 -2161 5647 5343 23 33 0 0 chr4 180717054 180717084 -21611263 + AT_rich Low_complexity Low_complexity 1 30 0 2256 90 17 60 chr4 180717139 180717541 -21610806 + L1MA4A LINE L1 5914 6298 -5 26 0 0 0 chr4 180717831 180717857 -21610490 + AT_rich Low_complexity Low_complexity 1 26 0 26 88 0 0 chr4 180717907 180717975 -21610372 + AT_rich Low_complexity Low_complexity 1 68 0 7319 37 1 0 chr4 180718586 180719662 -21608685 + L1PA4 LINE L1 5090 6167 0 392 131 0 16 chr4 180720160 180720221 -21608126 - FLAM_A SINE Alu -11 122 63 327 303 17 51 chr4 180720292 180720470 -21607877 + MLT1K LTR MaLR 417 588 0 704 153 108 23 chr4 180721315 180721491 -21606856 - L1MB4 LINE L1 0 6180 5990 3231 253 67 41 chr4 180721497 180722997 -21605350 + L1ME2 LINE L1 3745 5311 -853 1772 120 11 18 chr4 180722997 180723280 -21605067 + AluSx SINE Alu 2 282 -30 3231 253 67 41 chr4 180723280 180724138 -21604209 + L1ME2 LINE L1 5311 6145 -19 2031 113 0 3 chr4 180724146 180724467 -21603880 - AluSc SINE Alu 0 320 1 1673 111 19 4 chr4 180724468 180724730 -21603617 - L1PA13 LINE L1 -2 6161 5896 2460 50 0 3 chr4 180724989 180725287 -21603060 + AluY SINE Alu 1 297 -14 189 196 0 0 chr4 180727425 180727476 -21600871 + T-rich Low_complexity Low_complexity 1 51 0 276 323 157 36 chr4 180727846 180728069 -21600278 - MIR SINE MIR -3 259 10 9532 161 38 6 chr4 180728093 180729743 -21598604 + Tigger1 DNA MER2_type 1 1702 -716 1728 153 32 4 chr4 180729955 180730236 -21598111 - AluJb SINE Alu -23 289 1 22 0 0 0 chr4 180730880 180730902 -21597445 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 180731189 180731213 -21597134 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr4 180731563 180731593 -21596754 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 180732147 180732169 -21596178 + AT_rich Low_complexity Low_complexity 1 22 0 3079 164 32 68 chr4 180732836 180733356 -21594991 + L1MC1 LINE L1 4842 5299 -1034 2430 4 0 0 chr4 180733356 180733622 -21594725 + AluYa5 SINE Alu 39 304 -7 3079 164 32 68 chr4 180733622 180734137 -21594210 + L1MC1 LINE L1 5299 5831 -502 1808 144 0 4 chr4 180734137 180734401 -21593946 + AluSx SINE Alu 1 263 -49 315 0 0 0 chr4 180734744 180734779 -21593568 + (CA)n Simple_repeat Simple_repeat 2 36 0 855 185 65 16 chr4 180734921 180735105 -21593242 - L1PA16 LINE L1 -1 6165 5973 * 3295 189 70 6 chr4 180735095 180735782 -21592565 + L1PA16 LINE L1 5254 5984 -184 2727 215 73 33 chr4 180735783 180736631 -21591716 - Charlie1a DNA MER1_type -482 973 92 266 300 118 0 chr4 180736636 180736746 -21591601 - Charlie1a DNA MER1_type -1327 128 6 346 252 200 19 chr4 180737048 180737203 -21591144 + MER5A DNA MER1_type 4 186 -3 41 21 0 0 chr4 180738632 180738680 -21589667 + AT_rich Low_complexity Low_complexity 1 48 0 288 0 0 0 chr4 180738743 180738775 -21589572 + (TG)n Simple_repeat Simple_repeat 2 33 0 181 311 37 73 chr4 180739134 180739298 -21589049 + MER5A DNA MER1_type 1 158 -31 * 297 279 0 23 chr4 180739233 180739319 -21589028 - MER5A DNA MER1_type -84 105 22 405 0 0 0 chr4 180739768 180739813 -21588534 + (TC)n Simple_repeat Simple_repeat 2 46 0 207 176 0 0 chr4 180740574 180740608 -21587739 + (TTG)n Simple_repeat Simple_repeat 2 35 0 261 0 0 0 chr4 180741245 180741274 -21587073 + (TG)n Simple_repeat Simple_repeat 1 29 0 471 147 0 32 chr4 180742884 180742979 -21585368 + L1MB8 LINE L1 6087 6178 0 31 0 0 0 chr4 180744070 180744101 -21584246 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 180744608 180744629 -21583718 + AT_rich Low_complexity Low_complexity 1 21 0 342 0 0 0 chr4 180745105 180745143 -21583204 + (TG)n Simple_repeat Simple_repeat 2 39 0 12690 152 48 11 chr4 180745466 180747797 -21580550 - Tigger1 DNA MER2_type 0 2418 2 2325 87 0 10 chr4 180748172 180748484 -21579863 + AluY SINE Alu 1 309 -2 1465 211 18 0 chr4 180748906 180749191 -21579156 - MER47B DNA MER2_type 0 418 129 355 263 32 6 chr4 180749194 180749350 -21578997 + MER114 LTR ERV 489 648 0 242 28 0 28 chr4 180750344 180750380 -21577967 + (TA)n Simple_repeat Simple_repeat 2 36 0 6014 149 39 8 chr4 180751112 180753010 -21575337 + L1MA3 LINE L1 4341 6305 0 236 285 24 8 chr4 180753105 180753228 -21575119 + (TA)n Simple_repeat Simple_repeat 2 126 0 31 26 0 0 chr4 180753808 180753846 -21574501 + AT_rich Low_complexity Low_complexity 1 38 0 4947 85 5 0 chr4 180754258 180754915 -21573432 + PABL_A LTR ERV1 1 660 0 346 295 52 23 chr4 180757697 180757870 -21570477 + MER5B DNA MER1_type 1 178 0 269 359 16 39 chr4 180757879 180758007 -21570340 + MIR SINE MIR 2 126 -136 1359 180 29 25 chr4 180758036 180758314 -21570033 + AluJo SINE Alu 21 299 -13 2313 78 14 0 chr4 180758435 180758729 -21569618 + AluSp SINE Alu 1 298 -15 423 311 34 17 chr4 180759061 180759238 -21569109 + L1MEc LINE L1 37 216 -6180 293 197 33 0 chr4 180759246 180759307 -21569040 + L1P3 LINE L1 223 285 -6176 10762 97 49 6 chr4 180759308 180760950 -21567397 + L1P LINE L1 2221 3934 -2212 5755 97 25 7 chr4 180760943 180761821 -21566526 + L1P LINE L1 4510 5403 -743 * 731 311 44 3 chr4 180761822 180762185 -21566162 + L1MEc LINE L1 2399 2776 -3439 25 31 0 0 chr4 180762219 180762251 -21566096 + AT_rich Low_complexity Low_complexity 1 32 0 210 247 49 37 chr4 180762913 180762994 -21565353 - MIR SINE MIR -106 156 75 25 51 0 0 chr4 180763679 180763718 -21564629 + AT_rich Low_complexity Low_complexity 1 39 0 422 339 32 25 chr4 180763735 180764015 -21564332 - L1MC4 LINE L1 -1056 6986 6705 3141 111 29 149 chr4 180764108 180765019 -21563328 - Tigger3b DNA MER2_type -407 825 8 432 0 0 0 chr4 180765336 180765384 -21562963 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2092 110 0 14 chr4 180765384 180765665 -21562682 - AluSc SINE Alu -32 277 1 1117 251 68 26 chr4 180765838 180766189 -21562158 + LTR40b LTR ERVL 65 430 -32 2062 131 0 0 chr4 180766369 180766683 -21561664 - AluSx SINE Alu 0 314 1 408 330 65 87 chr4 180766883 180767549 -21560798 - L1MEc LINE L1 -1668 4547 3897 267 342 65 5 chr4 180767659 180767858 -21560489 - HAL1b LINE L1 -738 610 400 366 270 61 14 chr4 180768462 180768610 -21559737 + AluJb SINE Alu 140 294 -8 1628 162 24 92 chr4 180769124 180769238 -21559109 + MER7A DNA MER2_type 2 122 -2916 1202 200 3 104 chr4 180769238 180769573 -21558774 - AluJo SINE Alu 0 302 2 1628 162 24 92 chr4 180769573 180769829 -21558518 + MER7A DNA MER2_type 122 345 -1 23 0 0 0 chr4 180770144 180770167 -21558180 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr4 180770763 180770802 -21557545 + AT_rich Low_complexity Low_complexity 1 39 0 264 233 0 14 chr4 180770843 180770916 -21557431 - L1ME LINE L1 -301 5869 5798 878 275 34 11 chr4 180771264 180771526 -21556821 + LTR40a LTR ERVL 245 512 -7 471 272 66 33 chr4 180771583 180771888 -21556459 + L1ME LINE L1 5259 5573 -589 26 64 0 0 chr4 180772120 180772167 -21556180 + AT_rich Low_complexity Low_complexity 1 47 0 553 285 133 57 chr4 180772173 180772946 -21555401 - L1MEc LINE L1 -2734 3481 2650 403 167 0 0 chr4 180772958 180773030 -21555317 - MSTD LTR MaLR -2 455 384 1221 126 30 5 chr4 180773049 180773248 -21555099 - LTR9B LTR ERV1 -84 560 357 1150 186 166 36 chr4 180773248 180773549 -21554798 - MSTD LTR MaLR -56 340 1 1553 199 39 69 chr4 180773592 180773738 -21554609 + LTR2 LTR ERV1 1 150 -299 2677 9 3 34 chr4 180773738 180774059 -21554288 + AluYb8 SINE Alu 1 311 -7 1553 199 39 69 chr4 180774059 180774345 -21554002 + LTR2 LTR ERV1 150 420 -29 4261 68 56 19 chr4 180775760 180776348 -21551999 + LTR66 LTR ERVL 1 610 0 276 320 0 0 chr4 180777903 180777978 -21550369 + MER57A LTR ERV1 42 116 -287 3809 92 11 0 chr4 180777987 180778508 -21549839 + L1PA13 LINE L1 5426 5952 -211 5206 194 20 16 chr4 180778610 180779746 -21548601 + L1M2 LINE L1 1239 2379 -4470 543 333 74 17 chr4 180780125 180780356 -21547991 + MIR SINE MIR 16 259 -3 360 138 0 0 chr4 180780363 180780428 -21547919 + (TC)n Simple_repeat Simple_repeat 2 66 0 392 301 95 53 chr4 180780534 180780913 -21547434 - L1MEc LINE L1 -4573 1823 1429 2778 218 5 14 chr4 180780943 180781503 -21546844 - MLT1E3 LTR MaLR 0 624 70 317 261 43 0 chr4 180782158 180782273 -21546074 - L1MEc LINE L1 -5083 1122 1003 2642 152 37 23 chr4 180782280 180782794 -21545553 - L1MA9 LINE L1 -5 6307 5787 315 0 0 0 chr4 180782807 180782842 -21545505 + (TG)n Simple_repeat Simple_repeat 2 36 0 5985 173 30 15 chr4 180782845 180784058 -21544289 - Tigger3b DNA MER2_type 0 1231 1 396 0 0 0 chr4 180784060 180784104 -21544243 + (TA)n Simple_repeat Simple_repeat 1 44 0 275 148 33 49 chr4 180784105 180784166 -21544181 + L1M3 LINE L1 5734 5793 -375 331 173 25 0 chr4 180784166 180784247 -21544100 + (TA)n Simple_repeat Simple_repeat 1 83 0 280 216 45 23 chr4 180784247 180784335 -21544012 - L1MC4 LINE L1 -1339 6703 6614 368 311 83 64 chr4 180784959 180785319 -21543028 + L1MCa LINE L1 86 452 -5974 1117 153 14 18 chr4 180785816 180786038 -21542309 + L1MA9 LINE L1 6079 6299 -13 588 282 106 32 chr4 180786066 180786502 -21541845 + L1MCa LINE L1 1818 2285 -4322 340 309 8 32 chr4 180787503 180787626 -21540721 + LTR33 LTR ERVL 46 165 -356 336 295 55 72 chr4 180787640 180787877 -21540470 + LTR33 LTR ERVL 289 521 0 2418 129 35 46 chr4 180787971 180788172 -21540175 + MSTA LTR MaLR 1 203 -225 1731 171 4 0 chr4 180788172 180788453 -21539894 + AluJb SINE Alu 14 295 -17 2418 129 35 46 chr4 180788453 180788684 -21539663 + MSTA LTR MaLR 203 428 0 407 321 62 59 chr4 180789216 180789777 -21538570 + ERVL LTR ERVL 836 1398 -4366 1155 194 5 145 chr4 180790320 180790692 -21537655 - LTR8A LTR ERV1 -374 353 34 265 233 0 0 chr4 180790722 180790782 -21537565 + CT-rich Low_complexity Low_complexity 1 60 0 1859 125 31 11 chr4 180792892 180793179 -21535168 + AluSx SINE Alu 2 294 -18 23 78 0 0 chr4 180793450 180793501 -21534846 + AT_rich Low_complexity Low_complexity 1 51 0 23 54 0 0 chr4 180794266 180794303 -21534044 + AT_rich Low_complexity Low_complexity 1 37 0 1480 184 7 18 chr4 180794308 180794586 -21533761 - AluJo SINE Alu -37 275 1 2137 207 5 0 chr4 180795486 180795931 -21532416 - L1PB1 LINE L1 -1731 4415 3969 4458 167 21 6 chr4 180795931 180797198 -21531149 + L1PB1 LINE L1 4406 5682 -483 198 0 0 0 chr4 180797198 180797220 -21531127 + (TA)n Simple_repeat Simple_repeat 2 23 0 1861 116 37 4 chr4 180797220 180797488 -21530859 - AluSx SINE Alu -27 285 9 1166 234 160 18 chr4 180797500 180797893 -21530454 + L1MC4 LINE L1 7450 7898 -144 288 0 0 0 chr4 180798368 180798400 -21529947 + (CA)n Simple_repeat Simple_repeat 2 33 0 407 71 0 0 chr4 180798458 180798514 -21529833 - Alu SINE Alu -254 56 1 745 177 0 0 chr4 180798903 180799044 -21529303 + L1PB1 LINE L1 6011 6151 0 22 35 0 0 chr4 180799958 180799987 -21528360 + AT_rich Low_complexity Low_complexity 1 29 0 5703 67 44 3 chr4 180800361 180801110 -21527237 - LTR17 LTR ERV1 0 780 1 1887 145 14 0 chr4 180802024 180802150 -21526197 + AluSx SINE Alu 1 124 -188 225 0 0 0 chr4 180802150 180802175 -21526172 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1887 145 14 0 chr4 180802175 180802337 -21526010 + AluSx SINE Alu 124 293 -19 34 84 0 0 chr4 180802504 180802587 -21525760 + AT_rich Low_complexity Low_complexity 1 83 0 398 20 20 0 chr4 180802617 180802668 -21525679 + (TG)n Simple_repeat Simple_repeat 1 52 0 866 54 0 0 chr4 180802861 180802973 -21525374 + L1PA4 LINE L1 6041 6152 -3 655 311 102 11 chr4 180803191 180803474 -21524873 - MLT1J LTR MaLR -155 356 48 1184 200 0 118 chr4 180805285 180805625 -21522722 - AluJo SINE Alu -1 301 2 4322 158 46 0 chr4 180805628 180806388 -21521959 - L1PA16 LINE L1 -6 6160 5366 28 29 0 0 chr4 180806797 180806832 -21521515 + AT_rich Low_complexity Low_complexity 1 35 0 991 141 101 50 chr4 180807057 180807130 -21521217 - MSTA LTR MaLR 0 428 360 2331 57 40 7 chr4 180807130 180807427 -21520920 + AluY SINE Alu 1 307 -4 991 141 101 50 chr4 180807427 180807552 -21520795 - MSTA LTR MaLR -68 360 220 455 235 0 20 chr4 180807608 180807710 -21520637 + MLT1J2 LTR MaLR 25 124 -326 1002 128 151 0 chr4 180807740 180807919 -21520428 - MSTA LTR MaLR -222 206 1 448 260 58 13 chr4 180808120 180808274 -21520073 + MIR SINE MIR 72 232 -30 700 308 184 20 chr4 180808417 180809065 -21519282 - L2 LINE L2 -1 3312 2572 2891 215 56 0 chr4 180810227 180810888 -21517459 - L1PB4 LINE L1 -1908 4238 3541 4412 200 30 16 chr4 180810893 180812752 -21515595 + L1PB4 LINE L1 4267 6153 -3 584 216 0 0 chr4 180813185 180813287 -21515060 + Tigger3b DNA MER2_type 1 102 -1129 * 2659 99 26 14 chr4 180813286 180813692 -21514655 + Tigger3b DNA MER2_type 275 688 -2340 2165 129 0 0 chr4 180813692 180813987 -21514360 + AluSg SINE Alu 1 295 -15 2659 99 26 14 chr4 180813987 180814006 -21514341 + Tigger3b DNA MER2_type 688 705 -526 200 200 0 0 chr4 180814043 180814078 -21514269 + (ATG)n Simple_repeat Simple_repeat 1 35 0 837 274 70 4 chr4 180814304 180814563 -21513784 + LTR16A1 LTR ERVL 168 443 -14 297 109 0 0 chr4 180815382 180815428 -21512919 + (TG)n Simple_repeat Simple_repeat 2 47 0 200 214 18 0 chr4 180815859 180815915 -21512432 + (CAAA)n Simple_repeat Simple_repeat 4 60 0 26 0 0 0 chr4 180816969 180816995 -21511352 + AT_rich Low_complexity Low_complexity 1 26 0 9621 209 18 27 chr4 180817657 180820091 -21508256 - L1 LINE L1 -1513 4633 2222 7550 216 31 14 chr4 180820103 180821879 -21506468 - L1PBa LINE L1 -5219 1644 3 903 311 73 41 chr4 180822019 180822460 -21505887 + L1MDa LINE L1 8 462 -6078 5500 269 45 56 chr4 180822582 180823153 -21505194 + L1MDa LINE L1 2271 2847 -3693 1908 132 11 0 chr4 180823153 180823464 -21504883 + AluSx SINE Alu 1 314 0 5500 269 45 56 chr4 180823464 180825628 -21502719 + L1MDa LINE L1 2847 4965 -1575 1915 126 0 11 chr4 180825628 180825899 -21502448 + AluSq SINE Alu 1 268 -45 5500 269 45 56 chr4 180825899 180826393 -21501954 + L1MDa LINE L1 4965 5463 -1077 236 130 22 0 chr4 180826658 180826704 -21501643 + (TG)n Simple_repeat Simple_repeat 2 48 0 620 265 44 17 chr4 180828387 180828568 -21499779 - MER45C DNA AcHobo -1 952 767 268 283 22 22 chr4 180828702 180828794 -21499553 - MER45C DNA AcHobo -861 92 1 30 59 0 0 chr4 180828920 180828971 -21499376 + AT_rich Low_complexity Low_complexity 1 51 0 1430 154 49 25 chr4 180829805 180830091 -21498256 - L1M2 LINE L1 -473 5818 5526 1588 160 91 27 chr4 180830521 180830852 -21497495 - THE1A LTR MaLR -3 352 1 1518 229 78 52 chr4 180831927 180832322 -21496025 + LTR40a LTR ERVL 6 418 -101 3516 149 52 7 chr4 180832322 180832938 -21495409 + LTR9B LTR ERV1 1 644 0 1518 229 78 52 chr4 180832938 180833043 -21495304 + LTR40a LTR ERVL 418 519 0 351 313 52 15 chr4 180833210 180833344 -21495003 - MIR3 SINE MIR -49 159 21 1336 254 57 73 chr4 180833379 180833937 -21494410 + MLT1H1 LTR MaLR 7 555 0 22 70 0 0 chr4 180834223 180834266 -21494081 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr4 180834352 180834380 -21493967 + AT_rich Low_complexity Low_complexity 1 28 0 15545 191 39 39 chr4 180835230 180839451 -21488896 + L1P3 LINE L1 20 4330 -2131 3593 136 12 74 chr4 180839422 180840163 -21488184 + L1MA7 LINE L1 5910 6604 -2 * 254 327 88 46 chr4 180840835 180841052 -21487295 + L2 LINE L2 3085 3310 -3 1184 200 0 118 chr4 180843730 180844070 -21484277 - AluJo SINE Alu -1 301 2 4322 158 46 0 chr4 180844073 180844833 -21483514 - L1PA16 LINE L1 -6 6160 5366 28 29 0 0 chr4 180845242 180845277 -21483070 + AT_rich Low_complexity Low_complexity 1 35 0 442 153 0 0 chr4 180845502 180845574 -21482773 - MSTA LTR MaLR 0 428 357 1759 96 48 4 chr4 180845574 180845823 -21482524 + AluY SINE Alu 1 260 -51 208 216 0 0 chr4 180845835 180845872 -21482475 + G-rich Low_complexity Low_complexity 1 37 0 770 246 29 117 chr4 180845872 180846327 -21482020 + L1M4 LINE L1 4655 5069 -1077 236 130 22 0 chr4 180846592 180846638 -21481709 + (TG)n Simple_repeat Simple_repeat 2 48 0 604 247 43 12 chr4 180848321 180848483 -21479864 - MER45 DNA AcHobo -1 1580 1414 268 283 22 22 chr4 180848635 180848727 -21479620 - MER45 DNA AcHobo -861 92 1 30 59 0 0 chr4 180848853 180848904 -21479443 + AT_rich Low_complexity Low_complexity 1 51 0 247 218 81 11 chr4 180849923 180850010 -21478337 - MER70B LTR ERVL -3 575 483 1152 278 29 12 chr4 180850324 180850669 -21477678 + MER93a LTR ERV1 50 400 -2 434 316 48 19 chr4 180850700 180850909 -21477438 + MER93a-int LTR ERV1 35 249 -7288 299 220 55 44 chr4 180851262 180851353 -21476994 + MER93a-int LTR ERV1 868 959 -5842 296 152 0 0 chr4 180851536 180851582 -21476765 + MER31-int LTR ERV1 820 865 -4071 668 208 85 60 chr4 180851748 180852169 -21476178 + MER31-int LTR ERV1 885 2964 -379 439 251 52 21 chr4 180852245 180852436 -21475911 + MER31-int LTR ERV1 1627 1823 -3113 490 230 24 24 chr4 180852442 180852568 -21475779 + FLAM_C SINE Alu 1 126 -7 27 29 0 0 chr4 180852746 180852780 -21475567 + AT_rich Low_complexity Low_complexity 1 34 0 969 196 98 48 chr4 180852853 180853293 -21475054 + LTR27 LTR ERV1 1 511 -125 489 254 85 0 chr4 180853326 180853456 -21474891 + LTR27 LTR ERV1 494 634 -2 588 230 121 59 chr4 180853461 180853700 -21474647 + LTR27-int LTR ERV1 1 254 -6837 * 5097 197 58 41 chr4 180853695 180854943 -21473404 + LTR27-int LTR ERV1 409 4782 -435 368 277 12 0 chr4 180854950 180855033 -21473314 + LTR27-int LTR ERV1 3574 3657 -3548 14753 165 32 31 chr4 180855033 180859451 -21468896 + LTR27-int LTR ERV1 609 6993 -3 825 216 74 30 chr4 180859454 180859919 -21468428 + LTR27 LTR ERV1 2 1262 -140 357 288 7 41 chr4 180859926 180860072 -21468275 + LTR27 LTR ERV1 496 636 0 2440 57 3 0 chr4 180860089 180860390 -21467957 + AluY SINE Alu 1 302 -9 446 183 0 0 chr4 180860398 180860480 -21467867 + LTR49-int LTR ERV1 3666 3747 -1189 273 273 0 0 chr4 180860479 180860545 -21467802 + LTR49-int LTR ERV1 5330 5395 -936 * 888 231 146 88 chr4 180860697 180861158 -21467189 + LTR49-int LTR ERV1 4211 5969 -248 200 33 0 33 chr4 180861827 180861857 -21466490 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 825 278 67 0 chr4 180861964 180862187 -21466160 + MIR SINE MIR 22 259 -3 310 278 22 11 chr4 180862212 180862302 -21466045 + MIR SINE MIR 16 106 -156 1938 158 83 0 chr4 180862406 180862767 -21465580 + LTR29 LTR ERV1 160 550 -72 256 337 35 24 chr4 180862873 180862954 -21465393 - HAL1 LINE L1 -1041 1466 1387 3640 117 51 14 chr4 180862954 180863546 -21464801 + LTR18B LTR ERVL 1 614 0 256 337 35 24 chr4 180863546 180863633 -21464714 - HAL1 LINE L1 -1120 1387 1296 2905 123 18 5 chr4 180863677 180864125 -21464222 + MER4D LTR ERV1 1 454 -418 679 198 31 80 chr4 180864149 180864311 -21464036 + LTR8A LTR ERV1 574 727 0 2062 157 41 34 chr4 180864454 180864714 -21463633 + MER4E LTR ERV1 388 645 -134 1932 76 8 0 chr4 180864714 180864963 -21463384 + AluY SINE Alu 61 311 0 472 42 28 0 chr4 180864966 180865037 -21463310 + (TA)n Simple_repeat Simple_repeat 2 74 0 2062 157 41 34 chr4 180865037 180865160 -21463187 + MER4E LTR ERV1 646 778 -1 1670 243 65 69 chr4 180865165 180865886 -21462461 - MER72 LTR ERV1 -4 718 1 661 327 90 29 chr4 180865886 180866332 -21462015 - HAL1 LINE L1 -1251 1256 784 2299 81 0 40 chr4 180866406 180866729 -21461618 + AluY SINE Alu 1 310 -1 346 303 78 78 chr4 180866877 180867237 -21461110 - HAL1 LINE L1 -2142 365 6 1048 266 122 16 chr4 180867871 180868247 -21460100 - MER70B LTR ERVL -146 432 17 974 153 38 0 chr4 180868996 180869205 -21459142 + L1MA7 LINE L1 6064 6280 -11 22 35 0 0 chr4 180869460 180869489 -21458858 + AT_rich Low_complexity Low_complexity 1 29 0 1572 182 27 27 chr4 180869674 180869971 -21458376 + AluSx SINE Alu 14 310 -2 21 36 0 0 chr4 180870573 180870601 -21457746 + AT_rich Low_complexity Low_complexity 1 28 0 510 275 14 0 chr4 180870780 180870918 -21457429 - MER97a DNA MER1_type? -715 179 40 23 0 0 0 chr4 180870969 180870992 -21457355 + AT_rich Low_complexity Low_complexity 1 23 0 8064 199 141 17 chr4 180871230 180873345 -21455002 + L1M2 LINE L1 3 2379 -4470 1695 284 52 48 chr4 180873460 180874074 -21454273 - L1MCb LINE L1 -5159 886 267 2042 106 0 61 chr4 180874074 180874385 -21453962 - AluSx SINE Alu -20 292 1 1695 284 52 48 chr4 180874385 180874623 -21453724 - L1MCb LINE L1 -5778 267 31 692 327 68 34 chr4 180874915 180875411 -21452936 + LTR33 LTR ERVL 5 517 -4 622 311 57 18 chr4 180876959 180877187 -21451160 - MIR SINE MIR 0 262 26 1702 205 5 47 chr4 180877377 180877729 -21450618 - MLT1B LTR MaLR 0 390 56 3148 194 37 37 chr4 180877729 180878454 -21449893 - LTR8A LTR ERV1 -2 725 1 1702 205 5 47 chr4 180878454 180878506 -21449841 - MLT1B LTR MaLR -334 56 3 3198 165 100 24 chr4 180878507 180879049 -21449298 - MER50 LTR ERV1 -23 711 109 4739 128 51 6 chr4 180879049 180879839 -21448508 + LTR1B LTR ERV1 2 826 0 3198 165 100 24 chr4 180879839 180879955 -21448392 - MER50 LTR ERV1 -625 109 3 2750 3 0 0 chr4 180880212 180880508 -21447839 + AluYa5 SINE Alu 1 296 -15 3031 141 75 17 chr4 180881261 180881836 -21446511 - MER4B LTR ERV1 -2 608 1 1852 166 0 0 chr4 180882427 180882724 -21445623 + AluSx SINE Alu 5 301 0 264 305 153 30 chr4 180883457 180883752 -21444595 - Charlie7 DNA MER1_type -2218 394 64 186 43 0 0 chr4 180885769 180885792 -21442555 + (TG)n Simple_repeat Simple_repeat 2 24 0 1936 159 0 0 chr4 180886425 180886715 -21441632 + AluJb SINE Alu 5 294 -18 293 285 115 15 chr4 180887958 180888088 -21440259 - MIR SINE MIR 0 262 120 206 231 0 0 chr4 180888812 180888851 -21439496 - L2 LINE L2 -6 3266 3228 192 40 0 0 chr4 180889565 180889590 -21438757 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr4 180891102 180891130 -21437217 + AT_rich Low_complexity Low_complexity 1 28 0 2285 97 0 3 chr4 180891942 180892240 -21436107 + AluSq SINE Alu 2 298 -15 24 0 0 0 chr4 180893161 180893185 -21435162 + AT_rich Low_complexity Low_complexity 1 24 0 224 307 67 13 chr4 180894076 180894151 -21434196 - MIR3 SINE MIR -2 206 128 213 279 0 16 chr4 180894469 180894530 -21433817 + GA-rich Low_complexity Low_complexity 1 60 0 217 182 61 0 chr4 180894847 180894913 -21433434 + (TA)n Simple_repeat Simple_repeat 2 71 0 1315 246 160 20 chr4 180896487 180897032 -21431315 + L1MC4 LINE L1 6461 7081 -961 1563 267 46 16 chr4 180897076 180897642 -21430705 + L1MC4 LINE L1 7317 7899 -143 320 333 28 23 chr4 180897709 180897779 -21430568 - L1MC/D LINE L1 -2346 5462 5394 685 202 0 0 chr4 180897779 180897893 -21430454 + FLAM_A SINE Alu 1 114 -19 320 333 28 23 chr4 180897893 180897999 -21430348 - L1MC/D LINE L1 -2414 5394 5285 198 103 0 0 chr4 180898187 180898216 -21430131 + (T)n Simple_repeat Simple_repeat 1 29 0 1720 47 0 0 chr4 180898220 180898431 -21429916 + L1PA5 LINE L1 5938 6148 -6 441 294 83 62 chr4 180898458 180899329 -21429018 - L1MC/D LINE L1 -1116 5030 4120 1162 244 77 43 chr4 180899329 180899772 -21428575 + LTR40c LTR ERVL 4 461 -4 441 294 83 62 chr4 180899772 180900246 -21428101 - L1MC/D LINE L1 -2026 4120 3657 600 140 0 11 chr4 180900606 180900699 -21427648 + AluJ/FLAM SINE Alu 9 100 -212 244 0 0 53 chr4 180900732 180900770 -21427577 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 631 322 106 6 chr4 180901048 180901405 -21426942 + L2 LINE L2 241 633 -2681 2192 117 0 0 chr4 180901407 180901705 -21426642 + AluSq SINE Alu 1 298 -15 25 51 0 0 chr4 180901715 180901754 -21426593 + AT_rich Low_complexity Low_complexity 1 39 0 * 280 227 8 50 chr4 180901722 180901841 -21426506 - L1MA4 LINE L1 0 6303 6190 1836 188 34 0 chr4 180901846 180902224 -21426123 - L1MA4A LINE L1 -181 6122 5732 3490 312 123 24 chr4 180902224 180904220 -21424127 + L2 LINE L2 653 2847 -467 2120 260 41 11 chr4 180904587 180905195 -21423152 - MLT1E2 LTR MaLR 0 626 1 433 220 20 133 chr4 180905210 180905465 -21422882 - MLT1E2-int LTR MaLR -14 1721 1238 1464 252 61 45 chr4 180905600 180906108 -21422239 + LTR40a LTR ERVL 4 519 0 463 291 58 41 chr4 180906410 180906582 -21421765 + HERVL40 LTR ERVL 1034 1208 -4322 25 65 0 0 chr4 180907112 180907158 -21421189 + AT_rich Low_complexity Low_complexity 1 46 0 2271 39 7 7 chr4 180908168 180908454 -21419893 + L1PA5 LINE L1 5862 6147 -7 268 324 92 78 chr4 180910224 180910582 -21417765 + L2 LINE L2 2122 2484 -830 213 343 119 49 chr4 180911059 180911202 -21417145 - L3 LINE CR1 -1 1576 1424 1473 169 4 4 chr4 180911337 180911598 -21416749 - L1M2 LINE L1 -693 5607 5347 1185 199 35 57 chr4 180911597 180911964 -21416383 + L1MA7 LINE L1 5923 6281 -10 * 23 0 0 0 chr4 180911999 180912022 -21416325 + AT_rich Low_complexity Low_complexity 1 23 0 1802 90 0 16 chr4 180912088 180912333 -21416014 + AluY SINE Alu 55 295 -16 469 98 12 12 chr4 180912463 180912545 -21415802 + (TCCA)n Simple_repeat Simple_repeat 3 84 0 286 123 35 0 chr4 180912599 180912656 -21415691 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 415 277 106 7 chr4 180913187 180913328 -21415019 + MIR SINE MIR 47 201 -61 23 33 0 0 chr4 180913395 180913425 -21414922 + AT_rich Low_complexity Low_complexity 1 30 0 2288 55 38 10 chr4 180914388 180914678 -21413669 - AluY SINE Alu -13 298 1 772 274 54 9 chr4 180916890 180917113 -21411234 - HERVL40 LTR ERVL -5279 251 19 370 289 13 47 chr4 180917473 180917622 -21410725 - LTR40c LTR ERVL -319 146 3 428 333 7 0 chr4 180917700 180917838 -21410509 + HERVL40 LTR ERVL 1917 2055 -3630 946 217 80 4 chr4 180917874 180918137 -21410210 + Charlie1 DNA MER1_type 2088 2370 -391 409 291 72 60 chr4 180918141 180918216 -21410131 + L1ME2 LINE L1 4481 4554 -1592 1976 164 0 0 chr4 180918216 180918508 -21409839 - AluSx SINE Alu -20 292 1 409 291 72 60 chr4 180918508 180918851 -21409496 + L1ME2 LINE L1 4554 4904 -1242 791 227 35 0 chr4 180918962 180919160 -21409187 + L1ME2 LINE L1 5596 5800 -366 6188 216 94 39 chr4 180919165 180920828 -21407519 + MER52A LTR ERV1 1 1755 0 764 243 51 56 chr4 180920835 180921088 -21407259 + L1ME2 LINE L1 5812 6065 -269 1526 211 53 19 chr4 180921088 180921463 -21406884 + MLT1B LTR MaLR 2 389 -1 764 243 51 56 chr4 180921463 180921564 -21406783 + L1ME2 LINE L1 6065 6333 -1 223 115 58 0 chr4 180922114 180922166 -21406181 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 3073 300 19 30 chr4 180922366 180923276 -21405071 + L1PA15 LINE L1 1 900 -5887 * 4204 238 25 27 chr4 180923248 180924710 -21403637 + L1PA15 LINE L1 1208 2688 -4109 252 0 0 0 chr4 180924710 180924738 -21403609 + (CA)n Simple_repeat Simple_repeat 2 29 0 4204 238 25 27 chr4 180924738 180924754 -21403593 + L1PA15 LINE L1 2688 2703 -4094 2015 190 41 29 chr4 180924755 180925301 -21403046 + MLT2A2 LTR ERVL 1 554 0 553 217 0 0 chr4 180925307 180925436 -21402911 + L1PA15 LINE L1 2706 2834 -3963 1610 81 51 13 chr4 180925436 180925671 -21402676 - MLT2A1 LTR ERVL -194 250 7 3963 58 2 2 chr4 180925687 180926188 -21402159 - HERVL-A1 LTR ERVL -30 5624 5124 * 6702 81 8 0 chr4 180926181 180927057 -21401290 - HERVL LTR ERVL -4641 1013 131 9060 209 30 18 chr4 180927062 180930254 -21398093 + L1PA15 LINE L1 3589 6815 -1 1722 195 0 10 chr4 180930621 180930934 -21397413 - AluJb SINE Alu 0 312 3 5341 118 39 1 chr4 180931210 180932065 -21396282 + L1PA13 LINE L1 5275 6161 -2 34 55 0 0 chr4 180932287 180932342 -21396005 + AT_rich Low_complexity Low_complexity 1 55 0 2139 126 22 33 chr4 180932416 180932780 -21395567 + THE1B LTR MaLR 1 360 -4 10911 103 17 18 chr4 180932784 180934365 -21393982 + THE1B-int LTR MaLR 1 1580 0 2183 117 31 28 chr4 180934365 180934725 -21393622 + THE1B LTR MaLR 1 361 -3 26 93 0 0 chr4 180934747 180934822 -21393525 + AT_rich Low_complexity Low_complexity 1 75 0 21 0 0 0 chr4 180936383 180936404 -21391943 + AT_rich Low_complexity Low_complexity 1 21 0 2209 77 0 11 chr4 180936408 180936745 -21391602 + AluY SINE Alu 1 334 0 2317 174 16 7 chr4 180936755 180937180 -21391167 - MER4D LTR ERV1 0 903 475 2557 237 31 41 chr4 180937212 180938446 -21389901 + L1MCb LINE L1 299 1526 -4851 2133 278 61 13 chr4 180938436 180939288 -21389059 + L1M4 LINE L1 4021 4913 -1233 * 24 67 0 0 chr4 180939824 180939869 -21388478 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr4 180940215 180940237 -21388110 + AT_rich Low_complexity Low_complexity 1 22 0 29 60 0 0 chr4 180940706 180940756 -21387591 + AT_rich Low_complexity Low_complexity 1 50 0 538 329 116 15 chr4 180940940 180941337 -21387010 - L2 LINE L2 -278 3035 2593 3249 269 73 28 chr4 180942273 180944821 -21383526 - L1ME1 LINE L1 -6 6160 3503 588 325 120 62 chr4 180945481 180945677 -21382670 - L2 LINE L2 -898 2416 2233 195 42 0 0 chr4 180945677 180945701 -21382646 + (TCTA)n Simple_repeat Simple_repeat 1 24 0 588 325 120 62 chr4 180945701 180946737 -21381610 - L2 LINE L2 -1081 2233 1112 857 267 148 37 chr4 180949198 180949663 -21378684 + HAL1 LINE L1 1400 1916 -591 330 248 0 52 chr4 180949924 180950077 -21378270 + A-rich Low_complexity Low_complexity 3 147 0 213 65 0 0 chr4 180950665 180950696 -21377651 + (TG)n Simple_repeat Simple_repeat 2 32 0 2463 145 19 101 chr4 180951333 180951514 -21376833 - L1MA5 LINE L1 -2 6298 6104 1934 105 4 4 chr4 180951514 180951781 -21376566 - AluSg SINE Alu -13 297 31 2463 145 19 101 chr4 180951781 180952172 -21376175 - L1MA5 LINE L1 -196 6104 5773 2304 115 0 3 chr4 180952244 180952557 -21375790 + AluSx SINE Alu 1 350 0 224 26 0 53 chr4 180952557 180952595 -21375752 + (GAAAA)n Simple_repeat Simple_repeat 5 180 0 23 33 0 0 chr4 180953970 180954000 -21374347 + AT_rich Low_complexity Low_complexity 1 30 0 1536 183 33 13 chr4 180954179 180954479 -21373868 - AluJb SINE Alu -6 306 1 2079 123 3 0 chr4 180955703 180955996 -21372351 + AluSg SINE Alu 1 294 -16 1417 223 3 11 chr4 180956779 180957062 -21371285 - AluJb SINE Alu -31 281 1 355 227 0 0 chr4 180957486 180957552 -21370795 - MER2 DNA MER2_type 0 345 280 * 395 286 0 0 chr4 180957547 180957631 -21370716 - MER2 DNA MER2_type -261 84 1 188 212 15 0 chr4 180957757 180957823 -21370524 + (TG)n Simple_repeat Simple_repeat 2 68 0 23 0 0 0 chr4 180957998 180958021 -21370326 + AT_rich Low_complexity Low_complexity 1 23 0 914 221 5 24 chr4 180958153 180958366 -21369981 + AluJo SINE Alu 5 213 -99 498 302 58 5 chr4 180958466 180958655 -21369692 + L2 LINE L2 3108 3306 -7 917 218 56 0 chr4 180958920 180959117 -21369230 + MER63B DNA MER1_type 1 208 -228 2318 181 53 42 chr4 180959445 180960014 -21368333 + L1MA10 LINE L1 5767 6334 0 30 27 0 0 chr4 180960122 180960159 -21368188 + AT_rich Low_complexity Low_complexity 1 37 0 2139 114 3 0 chr4 180962135 180962424 -21365923 + AluSx SINE Alu 1 290 -22 29885 122 33 49 chr4 180963191 180968972 -21359375 + L1P2 LINE L1 4 5686 -468 492 306 64 23 chr4 180969315 180969347 -21359000 - MIR SINE MIR -16 246 217 1447 219 59 112 chr4 180969347 180969919 -21358428 + MER67A LTR ERV1 2 543 0 492 306 64 23 chr4 180969919 180970105 -21358242 - MIR SINE MIR -45 217 19 389 306 56 10 chr4 180971014 180971406 -21356941 - Charlie2 DNA MER1_type -2390 472 1 239 179 0 71 chr4 180971543 180971627 -21356720 + T-rich Low_complexity Low_complexity 3 80 0 207 0 0 0 chr4 180972928 180972951 -21355396 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1417 210 60 9 chr4 180973390 180973737 -21354610 - MLT1A1 LTR MaLR 0 365 1 733 255 17 21 chr4 180975805 180976040 -21352307 - MER96B DNA MER1_type? -182 235 2 978 254 66 104 chr4 180976265 180976935 -21351412 + MER21B LTR ERV1 54 657 -206 369 0 0 0 chr4 180977784 180977825 -21350522 + (TG)n Simple_repeat Simple_repeat 2 42 0 1343 186 6 90 chr4 180979836 180980169 -21348178 + AluJb SINE Alu 1 305 -7 327 113 0 0 chr4 180981893 180981946 -21346401 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 1267 176 30 75 chr4 180981948 180982243 -21346104 - AluJo SINE Alu -30 282 1 21 0 0 0 chr4 180983273 180983294 -21345053 + AT_rich Low_complexity Low_complexity 1 21 0 192 339 73 37 chr4 180983467 180983576 -21344771 + MIR SINE MIR 20 132 -130 223 276 17 0 chr4 180984419 180984477 -21343870 + L2 LINE L2 3255 3313 0 1755 166 13 7 chr4 180985060 180985368 -21342979 + AluSx SINE Alu 1 310 -2 1427 190 29 48 chr4 180986438 180986654 -21341693 - AluJo SINE Alu 0 359 140 2442 117 19 6 chr4 180986654 180987013 -21341334 - THE1B LTR MaLR 0 364 1 10260 120 16 27 chr4 180987013 180988611 -21339736 - THE1B-int LTR MaLR 0 1580 1 2445 114 19 11 chr4 180988611 180988972 -21339375 - THE1B LTR MaLR 0 364 1 1427 190 29 48 chr4 180988972 180989112 -21339235 - AluJo SINE Alu -216 143 7 213 283 141 0 chr4 180989230 180989329 -21339018 + MIR SINE MIR 97 209 -53 188 296 70 14 chr4 180991760 180991831 -21336516 + MIR SINE MIR 48 122 -140 208 176 20 39 chr4 180991974 180992025 -21336322 + L2 LINE L2 3262 3311 -2 189 147 0 0 chr4 180992066 180992100 -21336247 + (CAT)n Simple_repeat Simple_repeat 2 35 0 29 0 0 0 chr4 180992273 180992302 -21336045 + AT_rich Low_complexity Low_complexity 1 29 0 214 376 64 0 chr4 180993813 180993938 -21334409 + L2 LINE L2 2577 2709 -605 349 329 18 6 chr4 180993997 180994167 -21334180 + MER117 DNA MER1_type 4 175 -22 578 237 91 59 chr4 180994319 180994505 -21333842 + MIR SINE MIR 60 251 -11 2359 200 16 4 chr4 180994588 180995104 -21333243 - L1MC2 LINE L1 -11 6333 5812 1183 195 29 26 chr4 180995173 180995445 -21332902 - L1PA16 LINE L1 -1 6165 5893 313 198 18 0 chr4 180995489 180995600 -21332747 + (TA)n Simple_repeat Simple_repeat 2 114 0 32 26 0 0 chr4 180995672 180995711 -21332636 + AT_rich Low_complexity Low_complexity 1 39 0 471 303 53 111 chr4 180995781 180996197 -21332150 + L2 LINE L2 2905 3296 -17 22 0 0 0 chr4 180996481 180996503 -21331844 + AT_rich Low_complexity Low_complexity 1 22 0 566 290 61 67 chr4 180997389 180997801 -21330546 - LTR16A1 LTR ERVL -50 400 1 2324 141 79 9 chr4 180998085 180998504 -21329843 + MER83 LTR ERV1 1 448 0 647 334 60 55 chr4 180998909 180999872 -21328475 - ERVL LTR ERVL -1066 4698 3639 * 964 348 59 56 chr4 180999855 181000197 -21328150 - ERVL LTR ERVL -2069 3695 3355 2247 89 0 26 chr4 181000197 181000501 -21327846 - AluSg SINE Alu -14 296 1 964 348 59 56 chr4 181000501 181001331 -21327016 - ERVL LTR ERVL -2409 3355 2520 674 331 85 13 chr4 181001454 181001759 -21326588 + L3 LINE CR1 1249 1575 -2 237 211 115 0 chr4 181001806 181001858 -21326489 - L2 LINE L2 -1 3271 3214 915 209 63 100 chr4 181002231 181002486 -21325861 - MSTD LTR MaLR 0 396 160 1981 148 35 3 chr4 181002486 181002502 -21325845 - L1PA16 LINE L1 -1 6165 5811 1985 158 6 3 chr4 181002502 181002830 -21325517 - L1PA16 LINE L1 -27 6139 5811 915 209 63 100 chr4 181002830 181002985 -21325362 - MSTD LTR MaLR -236 160 1 21 57 0 0 chr4 181003187 181003222 -21325125 + AT_rich Low_complexity Low_complexity 1 35 0 281 148 33 0 chr4 181003437 181003498 -21324849 + (TATG)n Simple_repeat Simple_repeat 4 66 0 * 352 281 35 18 chr4 181003488 181003602 -21324745 + L1MC4 LINE L1 6588 6703 -1339 22 56 0 0 chr4 181003630 181003666 -21324681 + AT_rich Low_complexity Low_complexity 1 36 0 24428 82 14 9 chr4 181003923 181008180 -21320167 - L1PA7 LINE L1 -12 6142 1869 365 306 17 53 chr4 181008406 181008613 -21319734 + MIR SINE MIR 44 241 -21 265 339 79 23 chr4 181009378 181009555 -21318792 - MIR SINE MIR -74 188 2 1327 283 179 31 chr4 181010720 181011679 -21316668 + L2 LINE L2 1940 3039 -274 1755 193 98 25 chr4 181011708 181012108 -21316239 - Tigger2a DNA MER2_type 0 434 6 219 294 130 33 chr4 181012236 181012328 -21316019 + L2 LINE L2 3208 3308 -5 621 273 27 69 chr4 181013092 181013280 -21315067 + MIR SINE MIR 3 179 -83 2252 105 0 10 chr4 181013280 181013584 -21314763 + AluSq SINE Alu 1 301 -12 621 273 27 69 chr4 181013584 181013655 -21314692 + MIR SINE MIR 179 251 -11 199 286 0 0 chr4 181013623 181013672 -21314675 + L2 LINE L2 3265 3313 0 * 28 29 0 0 chr4 181014135 181014170 -21314177 + AT_rich Low_complexity Low_complexity 1 35 0 650 244 154 84 chr4 181014951 181015438 -21312909 + MLT1G1 LTR MaLR 5 565 -30 186 302 21 21 chr4 181015525 181015621 -21312726 + L2 LINE L2 3156 3251 -62 309 79 66 13 chr4 181015768 181015844 -21312503 + (TA)n Simple_repeat Simple_repeat 1 80 0 22 0 0 0 chr4 181016044 181016066 -21312281 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr4 181016734 181016769 -21311578 + AT_rich Low_complexity Low_complexity 1 35 0 282 275 11 22 chr4 181016926 181017017 -21311330 + GA-rich Low_complexity Low_complexity 2 91 0 27 96 0 0 chr4 181021261 181021344 -21307003 + AT_rich Low_complexity Low_complexity 1 83 0 29 47 0 0 chr4 181022228 181022271 -21306076 + AT_rich Low_complexity Low_complexity 1 43 0 36 23 0 0 chr4 181022478 181022521 -21305826 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr4 181024001 181024024 -21304323 + AT_rich Low_complexity Low_complexity 1 23 0 27 49 0 0 chr4 181025531 181025572 -21302775 + AT_rich Low_complexity Low_complexity 1 41 0 1460 196 3 21 chr4 181025653 181025939 -21302408 - AluJo SINE Alu -31 281 1 316 352 82 13 chr4 181026043 181026202 -21302145 + MIR SINE MIR 21 190 -72 243 0 0 0 chr4 181026239 181026266 -21302081 + (TA)n Simple_repeat Simple_repeat 2 28 0 25 65 0 0 chr4 181026503 181026549 -21301798 + AT_rich Low_complexity Low_complexity 1 46 0 334 311 93 6 chr4 181026968 181027129 -21301218 + MIR SINE MIR 63 237 -25 306 125 0 0 chr4 181028155 181028203 -21300144 + (TA)n Simple_repeat Simple_repeat 2 49 0 303 28 0 0 chr4 181028676 181028712 -21299635 + (TA)n Simple_repeat Simple_repeat 1 36 0 821 298 19 8 chr4 181028896 181029154 -21299193 + MIR SINE MIR 2 262 0 379 367 50 35 chr4 181030693 181031115 -21297232 + L2 LINE L2 1264 1691 -1623 2663 123 40 49 chr4 181031576 181032047 -21296300 - LTR24 LTR ERV1 0 467 1 180 0 0 0 chr4 181032282 181032302 -21296045 + (CTTAT)n Simple_repeat Simple_repeat 3 22 0 3867 163 46 10 chr4 181032407 181033124 -21295223 + Tigger2 DNA MER2_type 2 744 -1974 1715 161 0 48 chr4 181033213 181033529 -21294818 - AluSx SINE Alu -7 305 5 1235 177 62 0 chr4 181033533 181033759 -21294588 + Tigger2 DNA MER2_type 2479 2718 0 182 384 57 16 chr4 181033770 181034015 -21294332 + L2 LINE L2 2522 2776 -538 593 232 18 149 chr4 181034380 181034663 -21293684 + MLT1D LTR MaLR 3 248 -219 1033 254 26 7 chr4 181034673 181034945 -21293402 + MLT1C LTR MaLR 191 467 0 21 57 0 0 chr4 181036768 181036803 -21291544 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 181036844 181036865 -21291482 + AT_rich Low_complexity Low_complexity 1 21 0 294 106 0 0 chr4 181037065 181037112 -21291235 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 22 35 0 0 chr4 181037194 181037223 -21291124 + AT_rich Low_complexity Low_complexity 1 29 0 36 23 0 0 chr4 181037850 181037893 -21290454 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 181038410 181038431 -21289916 + AT_rich Low_complexity Low_complexity 1 21 0 197 304 152 0 chr4 181038850 181038929 -21289418 - MIR3 SINE MIR -43 165 75 204 243 0 0 chr4 181039889 181039963 -21288384 + (TG)n Simple_repeat Simple_repeat 1 74 0 25 0 0 0 chr4 181040491 181040516 -21287831 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr4 181040801 181040824 -21287523 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr4 181040987 181041017 -21287330 + AT_rich Low_complexity Low_complexity 1 30 0 569 279 31 5 chr4 181041394 181041604 -21286743 + L1MC4 LINE L1 6443 6662 -1333 * 1648 246 109 5 chr4 181041598 181042164 -21286183 + L1MC4 LINE L1 7292 7916 -126 35 24 0 0 chr4 181042164 181042206 -21286141 + AT_rich Low_complexity Low_complexity 1 42 0 266 130 65 0 chr4 181042213 181042321 -21286026 + (TA)n Simple_repeat Simple_repeat 1 115 0 1952 126 3 0 chr4 181042707 181043021 -21285326 - AluSq SINE Alu 0 315 1 222 276 17 0 chr4 181044148 181044206 -21284141 + (CA)n Simple_repeat Simple_repeat 2 60 0 1070 303 39 30 chr4 181044916 181045381 -21282966 + Zaphod DNA AcHobo 30 498 -3533 637 205 53 90 chr4 181045781 181046137 -21282210 + Zaphod DNA AcHobo 2076 2418 -1613 * 1760 234 128 12 chr4 181046132 181046868 -21281479 + Zaphod DNA AcHobo 3211 4031 0 2643 145 19 5 chr4 181047028 181047448 -21280899 - MSTB LTR MaLR 0 426 1 266 389 19 19 chr4 181050088 181050245 -21278102 + MLT1I LTR MaLR 62 218 -191 * 483 315 80 33 chr4 181050224 181050437 -21277910 + MLT1J2 LTR MaLR 207 429 -21 22 0 0 0 chr4 181050689 181050711 -21277636 + AT_rich Low_complexity Low_complexity 1 22 0 219 228 0 0 chr4 181051290 181051382 -21276965 + (TA)n Simple_repeat Simple_repeat 1 92 0 427 210 11 0 chr4 181051437 181051613 -21276734 + (TA)n Simple_repeat Simple_repeat 2 179 0 470 213 21 0 chr4 181051646 181051740 -21276607 - MER82 DNA MER2_type -557 96 1 2405 155 74 24 chr4 181051742 181052199 -21276148 - Tigger1 DNA MER2_type 0 2418 1939 23 33 0 0 chr4 181052719 181052749 -21275598 + AT_rich Low_complexity Low_complexity 1 30 0 1684 163 28 82 chr4 181052900 181053306 -21275041 - MLT1B LTR MaLR -4 538 2 6884 140 28 23 chr4 181053633 181054527 -21273820 - Tigger1 DNA MER2_type -930 1488 585 663 140 9 0 chr4 181054527 181054641 -21273706 - L1PB4 LINE L1 0 6156 6042 6884 140 28 23 chr4 181054641 181054950 -21273397 - Tigger1 DNA MER2_type -1833 585 279 25 0 0 0 chr4 181055236 181055261 -21273086 + AT_rich Low_complexity Low_complexity 1 25 0 4846 157 35 22 chr4 181055273 181055564 -21272783 - MER49 LTR ERV1 0 923 637 1824 121 4 25 chr4 181055564 181055844 -21272503 - AluSx SINE Alu -13 299 26 4846 157 35 22 chr4 181055844 181056463 -21271884 - MER49 LTR ERV1 -286 637 1 2320 44 3 57 chr4 181058180 181058496 -21269851 - AluY SINE Alu -12 299 1 256 195 24 35 chr4 181058722 181058891 -21269456 + T-rich Low_complexity Low_complexity 2 168 0 2413 87 0 3 chr4 181058933 181059245 -21269102 - AluSx SINE Alu -1 311 1 1597 211 55 6 chr4 181059896 181060242 -21268105 - MLT1A1 LTR MaLR -2 363 1 475 236 81 0 chr4 181060255 181060378 -21267969 + LTR16A1 LTR ERVL 277 409 -48 4461 156 25 2 chr4 181060382 181061175 -21267172 - L1MC2 LINE L1 -111 6233 5423 493 271 64 48 chr4 181061531 181061719 -21266628 - MIR SINE MIR -6 256 66 211 311 8 15 chr4 181061738 181061870 -21266477 + (TA)n Simple_repeat Simple_repeat 2 132 0 2089 120 0 3 chr4 181061992 181062299 -21266048 + AluSx SINE Alu 1 306 0 1641 205 3 0 chr4 181062742 181063044 -21265303 + AluJb SINE Alu 1 303 -9 987 149 72 28 chr4 181063736 181063917 -21264430 - THE1B LTR MaLR 0 364 176 983 216 123 33 chr4 181064193 181064526 -21263821 - MLT1A1 LTR MaLR -2 363 1 1792 144 31 3 chr4 181066527 181066819 -21261528 - AluJb SINE Alu -12 300 1 26 0 0 0 chr4 181067135 181067161 -21261186 + AT_rich Low_complexity Low_complexity 1 26 0 3998 144 19 4 chr4 181067779 181068471 -21259876 - L1MA4 LINE L1 -2 6298 5597 21 0 0 0 chr4 181069764 181069785 -21258562 + AT_rich Low_complexity Low_complexity 1 21 0 1991 112 52 0 chr4 181069796 181070083 -21258264 - AluSx SINE Alu -10 302 1 474 270 78 111 chr4 181073758 181073886 -21254461 - MLT1K LTR MaLR -30 558 427 3437 157 17 11 chr4 181073886 181074525 -21253822 + L1MB1 LINE L1 5519 6161 -7 474 270 78 111 chr4 181074525 181074755 -21253592 - MLT1K LTR MaLR -161 427 212 475 291 121 24 chr4 181074763 181074928 -21253419 - MER5A DNA MER1_type -7 182 2 4604 36 51 3 chr4 181075174 181075760 -21252587 + L1PA4 LINE L1 5542 6155 0 232 270 0 0 chr4 181075872 181075935 -21252412 + L1M4 LINE L1 3760 3822 -2324 24 53 0 0 chr4 181077270 181077308 -21251039 + AT_rich Low_complexity Low_complexity 1 38 0 257 51 26 0 chr4 181077437 181077476 -21250871 + (TG)n Simple_repeat Simple_repeat 2 41 0 243 240 0 0 chr4 181077649 181077699 -21250648 - MLT1K LTR MaLR -525 68 19 185 385 10 39 chr4 181077746 181077850 -21250497 - L2 LINE L2 -195 3077 2977 180 344 62 0 chr4 181078116 181078180 -21250167 - L2 LINE L2 -682 2632 2565 27 62 0 0 chr4 181078704 181078752 -21249595 + AT_rich Low_complexity Low_complexity 1 48 0 364 285 89 46 chr4 181079325 181079710 -21248637 - L1MC/D LINE L1 -692 5550 5155 742 271 46 56 chr4 181080015 181080425 -21247922 + L1ME1 LINE L1 5756 6161 -5 35 78 0 0 chr4 181080622 181080699 -21247648 + AT_rich Low_complexity Low_complexity 1 77 0 21 0 0 0 chr4 181080831 181080852 -21247495 + AT_rich Low_complexity Low_complexity 1 21 0 1996 121 0 36 chr4 181081852 181082158 -21246189 - AluY SINE Alu -8 303 9 25 31 0 0 chr4 181082235 181082267 -21246080 + AT_rich Low_complexity Low_complexity 1 32 0 33 56 0 0 chr4 181083406 181083460 -21244887 + AT_rich Low_complexity Low_complexity 1 54 0 42348 35 22 2 chr4 181084679 181090744 -21237603 + L1PA3 LINE L1 2 6190 0 21 36 0 0 chr4 181091542 181091570 -21236777 + AT_rich Low_complexity Low_complexity 1 28 0 1306 234 43 58 chr4 181092210 181092679 -21235668 - L1MC/D LINE L1 -1001 5145 4684 317 239 142 9 chr4 181092682 181092795 -21235552 - L2 LINE L2 0 3313 3186 292 323 32 13 chr4 181094216 181094371 -21233976 - MIR SINE MIR -48 214 57 1664 235 56 89 chr4 181095236 181095862 -21232485 - MER77 LTR ERV1 0 605 1 266 333 72 7 chr4 181095982 181096120 -21232227 - MIR SINE MIR -111 151 5 231 333 46 35 chr4 181096954 181097128 -21231219 - L1MEc LINE L1 -6166 230 55 272 289 67 67 chr4 181097694 181097888 -21230459 - MIR SINE MIR -21 241 48 2073 107 3 17 chr4 181099535 181099833 -21228514 - AluSq SINE Alu -17 296 3 1506 113 5 0 chr4 181100720 181100932 -21227415 + AluSp SINE Alu 83 295 -18 27 62 0 0 chr4 181102037 181102085 -21226262 + AT_rich Low_complexity Low_complexity 1 48 0 367 283 81 92 chr4 181102268 181102350 -21225997 + L1 LINE L1 4201 4282 -1864 1515 193 28 30 chr4 181102350 181102712 -21225635 - MLT1A1 LTR MaLR 0 365 5 367 283 81 92 chr4 181102712 181103138 -21225209 + L1 LINE L1 4282 4703 -1443 389 315 106 82 chr4 181103144 181103703 -21224644 + L2 LINE L2 2390 2961 -353 1865 145 7 14 chr4 181103763 181104052 -21224295 - AluJo SINE Alu -15 297 11 2151 100 7 3 chr4 181104453 181104754 -21223593 - AluSx SINE Alu -10 302 1 1936 118 104 27 chr4 181105420 181105758 -21222589 + THE1B LTR MaLR 1 364 0 481 356 61 9 chr4 181105927 181106157 -21222190 + MLT1J LTR MaLR 74 315 -196 1654 223 99 2 chr4 181106339 181106765 -21221582 + MLT1C LTR MaLR 1 467 0 1200 193 114 20 chr4 181106904 181107210 -21221137 - MER44D DNA MER2_type 0 609 5 1806 152 50 0 chr4 181108250 181108547 -21219800 - AluSx SINE Alu 0 312 1 200 57 0 29 chr4 181109042 181109077 -21219270 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2630 177 9 40 chr4 181109357 181109932 -21218415 - LTR60 LTR ERV1 -29 557 1 462 283 75 0 chr4 181112241 181112361 -21215986 + MER94 DNA DNA 6 134 0 2190 155 59 10 chr4 181112758 181113165 -21215182 + MSTA LTR MaLR 1 427 -1 278 309 79 18 chr4 181113213 181113378 -21214969 - MIR SINE MIR -15 247 73 21 71 0 0 chr4 181113994 181114036 -21214311 + AT_rich Low_complexity Low_complexity 1 42 0 676 130 0 0 chr4 181115383 181115483 -21212864 + MSTA LTR MaLR 1 100 -328 * 1570 65 44 18 chr4 181115476 181115705 -21212642 - MLT2A1 LTR ERVL -209 235 1 943 235 184 63 chr4 181116414 181116908 -21211439 - MLT2B3 LTR ERVL 0 554 1 2080 124 3 13 chr4 181117127 181117442 -21210905 + AluSx SINE Alu 1 312 0 872 153 51 0 chr4 181120916 181121092 -21207255 - MER53 DNA DNA -2 187 3 2129 134 49 0 chr4 181121099 181121443 -21206904 + MER46B DNA MER2_type 1 236 0 1434 191 24 24 chr4 181121746 181122034 -21206313 - AluJo SINE Alu -24 288 1 283 336 88 0 chr4 181122099 181122212 -21206135 + L2 LINE L2 3145 3267 -5 193 290 107 61 chr4 181122226 181122357 -21205990 - MIR SINE MIR -95 167 31 262 260 78 0 chr4 181122479 181122556 -21205791 - MIR SINE MIR -70 192 110 24 0 0 0 chr4 181122846 181122870 -21205477 + AT_rich Low_complexity Low_complexity 1 24 0 426 164 0 21 chr4 181123736 181123834 -21204513 - AluJ/FLAM SINE Alu -226 76 1 1367 279 125 45 chr4 181124317 181125345 -21203002 + L1ME LINE L1 197 1299 -4916 248 304 30 82 chr4 181125347 181125617 -21202730 + L1ME LINE L1 1775 2030 -4366 1624 218 53 6 chr4 181125617 181125957 -21202390 - MLT1A1 LTR MaLR 0 365 10 257 298 42 38 chr4 181125966 181126228 -21202119 + L1ME LINE L1 2026 2288 -4108 798 251 40 40 chr4 181126361 181126712 -21201635 + L1M4 LINE L1 4851 5201 -945 533 108 0 0 chr4 181126713 181126796 -21201551 + AluSg1 SINE Alu 1 83 -226 511 310 107 58 chr4 181127330 181127845 -21200502 + L2 LINE L2 2774 3312 -1 295 314 34 8 chr4 181127988 181128106 -21200241 - MIR SINE MIR -38 224 104 1907 148 29 23 chr4 181128385 181128729 -21199618 + MER7A DNA MER2_type 2 345 -1 1647 163 0 21 chr4 181128860 181129143 -21199204 - AluJb SINE Alu -25 287 11 344 241 15 120 chr4 181129209 181129342 -21199005 + L1 LINE L1 5 123 -7045 337 318 88 95 chr4 181129359 181129928 -21198419 + L1 LINE L1 906 1470 -5698 658 299 0 5 chr4 181130018 181130212 -21198135 + L1 LINE L1 1737 1929 -5239 * 1064 181 0 104 chr4 181130203 181130334 -21198013 + L1 LINE L1 4972 5064 -2103 2096 107 3 3 chr4 181130334 181130624 -21197723 + AluSx SINE Alu 1 290 -22 1064 181 0 104 chr4 181130624 181130751 -21197596 + L1 LINE L1 5064 5203 -1964 886 204 0 0 chr4 181130975 181131127 -21197220 - FRAM SINE Alu -24 152 1 197 337 45 11 chr4 181132739 181132828 -21195519 - MIR3 SINE MIR -21 187 96 479 250 10 0 chr4 181132923 181133027 -21195320 + MER5A DNA MER1_type 6 110 -79 24 32 0 0 chr4 181133685 181133716 -21194631 + AT_rich Low_complexity Low_complexity 1 31 0 1714 173 0 30 chr4 181134408 181134708 -21193639 - AluJb SINE Alu -21 291 1 1113 180 5 14 chr4 181135466 181135677 -21192670 - AluJo SINE Alu -17 295 87 26 30 0 0 chr4 181139443 181139476 -21188871 + AT_rich Low_complexity Low_complexity 1 33 0 28 29 0 0 chr4 181139708 181139743 -21188604 + AT_rich Low_complexity Low_complexity 1 35 0 274 320 40 0 chr4 181140007 181140082 -21188265 + MIR SINE MIR 75 152 -56 1863 136 21 7 chr4 181140532 181140863 -21187484 + AluSx SINE Alu 1 335 0 26 0 0 0 chr4 181140981 181141007 -21187340 + AT_rich Low_complexity Low_complexity 1 26 0 745 121 0 0 chr4 181142101 181142217 -21186130 + AluSq/x SINE Alu 1 116 -196 326 23 23 0 chr4 181142218 181142261 -21186086 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 199 307 0 79 chr4 181144451 181144552 -21183795 + MIR3 SINE MIR 115 207 -1 32 0 0 0 chr4 181144894 181144926 -21183421 + AT_rich Low_complexity Low_complexity 1 32 0 216 320 198 23 chr4 181146545 181147048 -21181299 - L2 LINE L2 -101 3212 2617 309 68 0 0 chr4 181148951 181148995 -21179352 + (CA)n Simple_repeat Simple_repeat 2 45 0 376 279 39 56 chr4 181149380 181149613 -21178734 + L1MEd LINE L1 1010 1238 -5292 384 339 94 30 chr4 181149921 181150260 -21178087 + L1MEd LINE L1 1648 2008 -4713 2306 88 3 0 chr4 181150462 181150767 -21177580 - AluSg SINE Alu -4 306 1 343 275 49 26 chr4 181150937 181151291 -21177056 + L1MEd LINE L1 2448 2803 -3737 22 35 0 0 chr4 181151498 181151527 -21176820 + AT_rich Low_complexity Low_complexity 1 29 0 278 261 133 46 chr4 181151812 181152053 -21176294 + L1MEd LINE L1 3347 3608 -2932 364 295 115 28 chr4 181152405 181152762 -21175585 + L1MEd LINE L1 4075 4462 -2078 241 160 20 0 chr4 181153151 181153201 -21175146 + L1MEd LINE L1 4957 5007 -1533 360 0 0 0 chr4 181153215 181153255 -21175092 + (TG)n Simple_repeat Simple_repeat 2 41 0 383 321 146 23 chr4 181153261 181153604 -21174743 + L1MEd LINE L1 5057 5441 -1099 351 304 74 0 chr4 181154126 181154261 -21174086 + MER112 DNA MER1_type 116 260 0 1953 148 127 16 chr4 181154664 181155049 -21173298 + MSTA LTR MaLR 1 428 0 300 248 12 87 chr4 181155291 181155353 -21172994 + L1MCa LINE L1 1943 2008 -4418 230 232 0 12 chr4 181155353 181155402 -21172945 + (TA)n Simple_repeat Simple_repeat 2 51 -31 1569 188 29 32 chr4 181155402 181155743 -21172604 + MER2 DNA MER2_type 1 340 -4 230 232 0 12 chr4 181155743 181155775 -21172572 + (TA)n Simple_repeat Simple_repeat 51 82 0 300 248 12 87 chr4 181155775 181155792 -21172555 + L1MCa LINE L1 2008 2091 -4335 1504 184 3 38 chr4 181156002 181156295 -21172052 - AluJo SINE Alu -29 283 1 232 170 19 19 chr4 181156346 181156399 -21171948 - L1ME LINE L1 -433 5688 5636 355 400 19 0 chr4 181156698 181156853 -21171494 + L2 LINE L2 2881 3038 -275 360 329 34 55 chr4 181156901 181157138 -21171209 + L2 LINE L2 2825 3056 -216 637 213 16 0 chr4 181159560 181159687 -21168660 + FLAM_A SINE Alu 1 129 -4 2026 147 0 10 chr4 181160258 181160570 -21167777 - AluSx SINE Alu -3 309 1 29 47 0 0 chr4 181160611 181160654 -21167693 + AT_rich Low_complexity Low_complexity 1 43 0 198 0 0 0 chr4 181160679 181160701 -21167646 + (A)n Simple_repeat Simple_repeat 1 22 0 956 138 6 13 chr4 181160900 181161059 -21167288 + MER41B LTR ERV1 478 635 0 356 203 27 0 chr4 181161059 181161133 -21167214 + MER41B-int LTR ERV1 1 76 -5870 6968 115 26 8 chr4 181161153 181162219 -21166128 + MER41B-int LTR ERV1 4861 5946 0 3588 104 23 8 chr4 181162219 181162750 -21165597 + MER41B LTR ERV1 1 539 -96 2060 134 3 7 chr4 181162750 181163056 -21165291 - AluSc SINE Alu -4 305 1 1539 237 81 34 chr4 181163798 181164292 -21164055 + LTR40a LTR ERVL 1 517 -2 586 344 56 7 chr4 181164693 181165071 -21163276 + LTR16A LTR ERVL 2 450 0 180 307 149 18 chr4 181165078 181165192 -21163155 + L2 LINE L2 3184 3312 -1 2473 78 0 0 chr4 181165365 181165672 -21162675 + AluY SINE Alu 1 307 -4 23 0 0 0 chr4 181166881 181166904 -21161443 + AT_rich Low_complexity Low_complexity 1 23 0 1546 247 51 11 chr4 181168188 181168637 -21159710 - MLT1C LTR MaLR 0 467 1 2210 96 0 0 chr4 181168845 181169125 -21159222 - AluSg SINE Alu -30 280 1 2048 142 3 7 chr4 181169759 181170061 -21158286 - AluSx SINE Alu -11 301 1 232 230 35 106 chr4 181171760 181171850 -21156497 - MLT1H LTR MaLR -15 534 452 294 87 0 0 chr4 181171850 181171896 -21156451 + (TG)n Simple_repeat Simple_repeat 1 46 0 232 230 35 106 chr4 181171896 181171918 -21156429 - MLT1H LTR MaLR -97 452 430 1650 241 49 9 chr4 181173252 181173701 -21154646 - MLT1C LTR MaLR 0 467 1 1102 157 10 25 chr4 181173981 181174179 -21154168 - AluSg/x SINE Alu -1 311 117 270 330 150 20 chr4 181175106 181175306 -21153041 - MIR SINE MIR -33 229 4 2156 123 0 0 chr4 181175921 181176213 -21152134 - AluSq SINE Alu -21 292 1 2147 132 68 14 chr4 181177323 181177693 -21150654 - MLT1B LTR MaLR 0 390 1 269 100 200 33 chr4 181177921 181177981 -21150366 + MADE1 DNA Mariner 1 70 -10 253 118 98 0 chr4 181178012 181178063 -21150284 + MADE1 DNA Mariner 25 80 0 325 287 53 0 chr4 181178489 181178583 -21149764 - MLT1J1 LTR MaLR -347 99 1 313 312 9 28 chr4 181179006 181179115 -21149232 + MIR SINE MIR 53 159 -103 357 315 109 64 chr4 181180505 181180835 -21147512 + HAL1 LINE L1 1378 1722 -785 3475 128 99 5 chr4 181180999 181181606 -21146741 - MER4A LTR ERV1 0 664 1 32 67 0 0 chr4 181181853 181181913 -21146434 + AT_rich Low_complexity Low_complexity 1 60 0 2286 67 0 3 chr4 181182278 181182588 -21145759 - AluY SINE Alu 0 309 1 475 166 149 46 chr4 181182766 181182941 -21145406 + MER4C LTR ERV1 1 193 -272 475 278 20 71 chr4 181182911 181183166 -21145181 + LTR59 LTR ERV1 345 586 -11 784 203 0 14 chr4 181183455 181183646 -21144701 - AluJb SINE Alu 0 325 137 308 101 14 87 chr4 181183646 181183715 -21144632 + MER45C DNA AcHobo 98 161 -792 456 314 206 0 chr4 181183922 181184174 -21144173 + MER45C DNA AcHobo 328 631 -322 2801 168 95 16 chr4 181184197 181184763 -21143584 - LTR36 LTR ERV1 0 611 1 646 103 0 0 chr4 181184861 181184948 -21143399 + AluY SINE Alu 1 87 -224 227 200 0 0 chr4 181184958 181185008 -21143339 + A-rich Low_complexity Low_complexity 1 50 0 280 278 102 28 chr4 181185008 181185116 -21143231 + LTR16C LTR ERVL 232 347 -144 1784 167 55 35 chr4 181185134 181185482 -21142865 - THE1B LTR MaLR 0 364 10 25 0 0 0 chr4 181185723 181185748 -21142599 + AT_rich Low_complexity Low_complexity 1 25 0 2094 88 0 0 chr4 181185786 181186048 -21142299 + AluSg SINE Alu 39 300 -10 2058 89 250 6 chr4 181186096 181186456 -21141891 - LTR7 LTR ERV1 -2 448 1 2331 103 48 13 chr4 181186456 181186835 -21141512 - HERVH LTR ERV1 0 7713 7322 1355 142 18 0 chr4 181186833 181187052 -21141295 - HERVH LTR ERV1 -1894 5819 5597 * 4529 123 0 3 chr4 181187053 181187713 -21140634 - HERVH LTR ERV1 -2567 5146 4489 3276 114 6 4 chr4 181187716 181188209 -21140138 - HERVH LTR ERV1 -3720 3993 3500 829 155 20 0 chr4 181188208 181188356 -21139991 - HERVH LTR ERV1 -4423 3290 3140 * 5943 109 1 13 chr4 181188350 181189248 -21139099 - HERVH LTR ERV1 -4726 2987 2101 798 242 18 18 chr4 181189638 181189861 -21138486 - L1ME1 LINE L1 -5 6161 5939 2450 178 43 4 chr4 181189881 181190393 -21137954 - L1MA5 LINE L1 0 6300 5769 6117 119 7 17 chr4 181190406 181191369 -21136978 - L1MA3 LINE L1 0 6305 5352 * 7135 158 44 17 chr4 181191364 181194036 -21134311 - L1PBb LINE L1 -2962 3900 1153 8484 195 17 8 chr4 181194138 181196178 -21132169 - L1PBa LINE L1 -5219 1644 1 444 156 64 18 chr4 181196179 181196288 -21132059 - L1MA3 LINE L1 -926 5379 5266 * 6830 203 20 7 chr4 181196282 181197828 -21130519 + L1M4 LINE L1 2188 3754 -2392 21 57 0 0 chr4 181198060 181198095 -21130252 + AT_rich Low_complexity Low_complexity 1 35 0 444 344 64 20 chr4 181198358 181198737 -21129610 + L1M4 LINE L1 4107 4514 -1632 231 256 92 88 chr4 181198802 181199029 -21129318 + L1M4 LINE L1 4557 4784 -1362 257 67 0 0 chr4 181199186 181199231 -21129116 + LTR66 LTR ERVL 394 438 -172 211 318 87 8 chr4 181200747 181200873 -21127474 + L3 LINE CR1 1249 1384 -193 243 88 0 0 chr4 181201253 181201287 -21127060 + (TA)n Simple_repeat Simple_repeat 1 34 0 1126 128 16 5 chr4 181201948 181202136 -21126211 + L1PB2 LINE L1 5960 6149 -2 23 78 0 0 chr4 181202514 181202565 -21125782 + AT_rich Low_complexity Low_complexity 1 51 0 26 0 0 0 chr4 181203165 181203191 -21125156 + AT_rich Low_complexity Low_complexity 1 26 0 208 191 21 0 chr4 181204032 181204079 -21124268 + (TTA)n Simple_repeat Simple_repeat 3 50 0 1301 120 69 5 chr4 181204090 181204306 -21124041 + MER30 DNA MER1_type 1 230 0 1593 149 165 13 chr4 181204924 181205239 -21123108 - MER47A DNA MER2_type -3 363 1 482 190 36 88 chr4 181205775 181205912 -21122435 - MLT2C1 LTR ERVL -3 394 265 * 1279 206 65 10 chr4 181205869 181206160 -21122187 - MLT1B LTR MaLR -82 308 2 413 281 59 7 chr4 181207895 181208030 -21120317 - LTR16C LTR ERVL -163 328 187 227 274 16 0 chr4 181208297 181208359 -21119988 - MLT1J1 LTR MaLR -117 329 267 234 286 0 13 chr4 181208599 181208676 -21119671 + (TAG)n Simple_repeat Simple_repeat 1 76 0 226 236 154 18 chr4 181208879 181208989 -21119358 - MLT1K LTR MaLR -88 500 376 1529 225 22 14 chr4 181209740 181210095 -21118252 + MLT1A1 LTR MaLR 1 358 -7 1721 170 0 7 chr4 181212667 181212987 -21115360 - AluJb SINE Alu 0 320 3 246 188 0 0 chr4 181213149 181213197 -21115150 - LTR66 LTR ERVL -170 440 393 1609 189 23 3 chr4 181213908 181214214 -21114133 + AluJb SINE Alu 1 312 0 214 159 0 45 chr4 181216016 181216060 -21112287 + GA-rich Low_complexity Low_complexity 3 44 0 536 269 111 12 chr4 181216198 181216369 -21111978 - MIR SINE MIR -70 192 5 287 300 0 0 chr4 181218111 181218191 -21110156 - MIR SINE MIR -74 188 109 3984 211 65 3 chr4 181219125 181220263 -21108084 + L1 LINE L1 3898 5252 -894 182 360 121 49 chr4 181220403 181220973 -21107374 + L2 LINE L2 694 1304 -2010 21 0 0 0 chr4 181221324 181221345 -21107002 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 181221786 181221807 -21106540 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 181222055 181222077 -21106270 + AT_rich Low_complexity Low_complexity 1 22 0 217 213 0 25 chr4 181222860 181222940 -21105407 + CT-rich Low_complexity Low_complexity 4 81 0 270 56 0 0 chr4 181223855 181223891 -21104456 + (TG)n Simple_repeat Simple_repeat 2 37 0 30 0 0 0 chr4 181224072 181224102 -21104245 + AT_rich Low_complexity Low_complexity 1 30 0 1362 199 108 13 chr4 181224511 181224898 -21103449 + Charlie5 DNA MER1_type 1 424 -2188 5359 163 84 6 chr4 181224922 181224937 -21103410 + Tigger1 DNA MER2_type 7 19 -2399 1564 160 9 52 chr4 181224937 181225262 -21103085 - AluJb SINE Alu -1 311 1 5359 163 84 6 chr4 181225262 181226221 -21102126 + Tigger1 DNA MER2_type 19 1057 -1361 1350 241 94 0 chr4 181226228 181226652 -21101695 + Charlie5 DNA MER1_type 525 988 -1624 * 2321 216 217 5 chr4 181226642 181227505 -21100842 + Charlie5 DNA MER1_type 1559 2604 -8 204 270 159 18 chr4 181228017 181228180 -21100167 - MIR SINE MIR -2 260 75 2095 122 3 0 chr4 181228495 181228789 -21099558 + AluSx SINE Alu 1 295 -17 242 233 35 12 chr4 181228805 181228891 -21099456 + (TA)n Simple_repeat Simple_repeat 1 88 0 24 0 0 0 chr4 181228903 181228927 -21099420 + AT_rich Low_complexity Low_complexity 1 24 0 242 94 0 0 chr4 181229205 181229237 -21099110 + U2 snRNA snRNA 3 34 -154 216 0 0 0 chr4 181231237 181231261 -21097086 + (GA)n Simple_repeat Simple_repeat 1 24 0 857 238 97 4 chr4 181231637 181231864 -21096483 + MER58 DNA MER1_type 37 284 -57 498 33 0 0 chr4 181232458 181232518 -21095829 + (TG)n Simple_repeat Simple_repeat 2 61 0 323 276 217 32 chr4 181234580 181234801 -21093546 - MIR SINE MIR 0 262 1 195 334 173 42 chr4 181235394 181235729 -21092618 + L2 LINE L2 1255 1633 -1681 2152 114 3 3 chr4 181235904 181236203 -21092144 + AluSx SINE Alu 3 301 -11 2479 205 28 6 chr4 181236496 181236994 -21091353 + Tigger6a DNA MER2_type 7 515 -568 515 309 47 22 chr4 181236995 181237315 -21091032 - L1ME LINE L1 -5241 829 502 327 320 166 0 chr4 181238648 181238829 -21089518 - MIR SINE MIR 0 262 52 22 56 0 0 chr4 181239467 181239503 -21088844 + AT_rich Low_complexity Low_complexity 1 36 0 705 278 42 68 chr4 181239821 181240288 -21088059 + MLT1H1 LTR MaLR 1 555 -35 215 305 128 30 chr4 181240292 181240456 -21087891 + MIR SINE MIR 65 244 -18 * 609 312 57 16 chr4 181240453 181240700 -21087647 + L2 LINE L2 2228 2484 -830 243 0 0 0 chr4 181240931 181240958 -21087389 + (A)n Simple_repeat Simple_repeat 1 27 0 201 358 67 34 chr4 181241023 181241202 -21087145 + L2 LINE L2 2787 2971 -343 186 356 14 0 chr4 181242165 181242238 -21086109 + MIR3 SINE MIR 121 194 -14 299 51 0 0 chr4 181242358 181242397 -21085950 + MADE1 DNA Mariner 1 39 -41 25 31 0 0 chr4 181243440 181243472 -21084875 + AT_rich Low_complexity Low_complexity 1 32 0 183 80 0 0 chr4 181243830 181243855 -21084492 + (A)n Simple_repeat Simple_repeat 1 25 0 2719 208 18 52 chr4 181243863 181244375 -21083972 - L1MA4 LINE L1 -238 6062 5604 992 48 0 0 chr4 181244375 181244500 -21083847 - L1PA6 LINE L1 -4 6150 6026 2719 208 18 52 chr4 181244500 181244974 -21083373 - L1MA4 LINE L1 -696 5604 5116 37 39 0 0 chr4 181245891 181245942 -21082405 + AT_rich Low_complexity Low_complexity 1 51 0 399 212 172 0 chr4 181246073 181246172 -21082175 + L2 LINE L2 3197 3312 -1 261 0 0 0 chr4 181246774 181246803 -21081544 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr4 181247267 181247288 -21081059 + AT_rich Low_complexity Low_complexity 1 21 0 2269 118 0 0 chr4 181247745 181248058 -21080289 + AluSq SINE Alu 1 313 0 3645 138 166 7 chr4 181248204 181248880 -21079467 - LTR39 LTR ERV1 0 783 1 416 326 79 9 chr4 181248880 181249093 -21079254 - LTR16C LTR ERVL -40 451 224 4228 145 90 12 chr4 181249132 181249898 -21078449 - LTR1B LTR ERV1 0 826 1 354 185 54 92 chr4 181250097 181250227 -21078120 + MER5C DNA MER1_type 200 324 0 201 227 0 0 chr4 181250872 181250916 -21077431 + (CA)n Simple_repeat Simple_repeat 1 44 0 212 297 27 0 chr4 181251760 181251834 -21076513 + (TG)n Simple_repeat Simple_repeat 1 76 0 24 32 0 0 chr4 181251913 181251944 -21076403 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr4 181252205 181252234 -21076113 + AT_rich Low_complexity Low_complexity 1 29 0 1528 202 65 51 chr4 181252418 181252769 -21075578 - MLT1A1 LTR MaLR 0 365 10 398 325 44 23 chr4 181254250 181254634 -21073713 - L1ME4a LINE L1 -195 5926 5535 33 25 0 0 chr4 181254718 181254758 -21073589 + AT_rich Low_complexity Low_complexity 1 40 0 1345 196 16 59 chr4 181255086 181255408 -21072939 + AluJb SINE Alu 1 308 -4 261 0 0 0 chr4 181255408 181255437 -21072910 + (TA)n Simple_repeat Simple_repeat 1 29 0 593 160 53 77 chr4 181255723 181255792 -21072555 - FRAM SINE Alu -143 169 100 360 0 0 0 chr4 181255792 181255832 -21072515 + (TTTTG)n Simple_repeat Simple_repeat 4 43 0 593 160 53 77 chr4 181255832 181255931 -21072416 - FRAM SINE Alu -212 100 5 324 262 0 0 chr4 181257948 181258051 -21070296 + (TA)n Simple_repeat Simple_repeat 1 103 0 224 279 0 16 chr4 181258868 181258929 -21069418 + CT-rich Low_complexity Low_complexity 1 60 0 21 57 0 0 chr4 181258940 181258975 -21069372 + AT_rich Low_complexity Low_complexity 1 35 0 307 300 72 50 chr4 181259519 181259625 -21068722 - MIR SINE MIR -9 253 140 2056 120 7 23 chr4 181259625 181259933 -21068414 - AluSq SINE Alu -10 303 1 307 300 72 50 chr4 181259933 181260006 -21068341 - MIR SINE MIR -122 140 70 244 393 27 7 chr4 181261377 181261527 -21066820 - L3 LINE CR1 -354 1223 1071 2108 153 3 9 chr4 181262780 181263119 -21065228 - MER1B DNA MER1_type 0 337 1 2857 139 10 26 chr4 181263242 181263347 -21065000 - L1MC1 LINE L1 -5 6328 6223 1798 140 70 17 chr4 181263347 181263703 -21064644 - THE1C LTR MaLR 0 375 1 2857 139 10 26 chr4 181263703 181264102 -21064245 - L1MC1 LINE L1 -110 6223 5832 410 394 46 38 chr4 181264430 181264821 -21063526 + L2 LINE L2 1242 1635 -1679 504 302 104 74 chr4 181264924 181265318 -21063029 + L2 LINE L2 2074 2479 -835 245 181 57 9 chr4 181267030 181267135 -21061212 + (TA)n Simple_repeat Simple_repeat 1 110 0 426 129 92 0 chr4 181267148 181267311 -21061036 + (TA)n Simple_repeat Simple_repeat 2 179 0 340 317 95 33 chr4 181267440 181267683 -21060664 - L2 LINE L2 0 3313 3056 1119 234 81 50 chr4 181267794 181268178 -21060169 + MSTD LTR MaLR 1 396 0 22 35 0 0 chr4 181268372 181268401 -21059946 + AT_rich Low_complexity Low_complexity 1 29 0 186 43 0 0 chr4 181269021 181269044 -21059303 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2019 188 87 7 chr4 181269108 181269554 -21058793 - MER89 LTR ERV1 -23 536 55 1068 316 135 47 chr4 181269764 181270845 -21057502 + L2 LINE L2 2129 3312 -1 228 310 152 35 chr4 181271369 181271514 -21056833 + MIR SINE MIR 19 180 -82 243 299 10 52 chr4 181272121 181272218 -21056129 - L2 LINE L2 -42 3230 3138 2317 46 0 3 chr4 181272821 181273127 -21055220 - AluY SINE Alu 0 305 1 258 116 0 0 chr4 181273239 181273282 -21055065 + (GA)n Simple_repeat Simple_repeat 1 43 0 1563 147 236 11 chr4 181274323 181274671 -21053676 + MSTA LTR MaLR 3 428 0 3452 191 35 46 chr4 181274673 181275809 -21052538 + MSTD-int LTR MaLR 2 980 -600 1260 173 200 14 chr4 181275809 181276104 -21052243 + MSTA LTR MaLR 79 428 0 216 346 0 0 chr4 181276621 181276725 -21051622 + (TA)n Simple_repeat Simple_repeat 2 105 0 254 304 95 19 chr4 181276912 181277175 -21051172 - L1ME LINE L1 -303 5818 5536 185 94 31 0 chr4 181277764 181277796 -21050551 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1231 226 73 11 chr4 181277799 181278074 -21050273 - AluJo SINE Alu -20 292 1 227 247 22 11 chr4 181278190 181278279 -21050068 + (TA)n Simple_repeat Simple_repeat 2 91 0 45 34 0 0 chr4 181278428 181278487 -21049860 + AT_rich Low_complexity Low_complexity 1 59 0 604 318 125 49 chr4 181279032 181279131 -21049216 - L2 LINE L2 -692 2622 2532 1828 141 33 20 chr4 181279131 181279436 -21048911 - AluSx SINE Alu -3 309 1 604 318 125 49 chr4 181279436 181280145 -21048202 - L2 LINE L2 -782 2532 1753 1124 312 88 58 chr4 181280247 181281154 -21047193 + L2 LINE L2 2368 3304 -9 221 319 60 60 chr4 181281294 181281592 -21046755 - L2 LINE L2 -1258 2056 1759 772 110 25 0 chr4 181282675 181282793 -21045554 + AluJb SINE Alu 4 124 -188 51 75 0 0 chr4 181282930 181283037 -21045310 + AT_rich Low_complexity Low_complexity 1 107 0 262 171 89 57 chr4 181283911 181284034 -21044313 - HAL1 LINE L1 -123 2384 2258 430 212 112 97 chr4 181284304 181284429 -21043918 + L1MC4a LINE L1 5674 5796 -2012 2458 54 0 6 chr4 181284429 181284742 -21043605 + AluY SINE Alu 1 311 0 430 212 112 97 chr4 181284742 181284894 -21043453 + L1MC4a LINE L1 5796 5955 -1853 25 31 0 0 chr4 181285382 181285414 -21042933 + AT_rich Low_complexity Low_complexity 1 32 0 2717 173 50 15 chr4 181285592 181286129 -21042218 - LTR48B LTR ERV1 -35 609 54 7669 201 71 64 chr4 181286165 181286965 -21041382 - LTR48B-int LTR ERV1 0 6331 5538 6715 67 16 2 chr4 181286965 181288348 -21039999 - L1PA7 LINE L1 0 6154 4766 7669 201 71 64 chr4 181288348 181290130 -21038217 - LTR48B-int LTR ERV1 -793 5538 3771 2287 94 3 3 chr4 181290130 181290439 -21037908 - AluSc SINE Alu 0 309 1 7669 201 71 64 chr4 181290439 181290765 -21037582 - LTR48B-int LTR ERV1 -2560 3771 3449 2574 130 43 110 chr4 181290765 181291328 -21037019 + MER1A DNA MER1_type 3 527 0 7669 201 71 64 chr4 181291328 181291402 -21036945 - LTR48B-int LTR ERV1 -2882 3449 2536 267 111 95 63 chr4 181291514 181291577 -21036770 - LTR48B-int LTR ERV1 -2378 2493 2429 347 291 46 82 chr4 181292172 181292368 -21035979 - HAL1 LINE L1 -725 1782 1594 508 278 181 41 chr4 181292439 181292956 -21035391 - LTR50 LTR ERVL -102 693 22 40 37 0 0 chr4 181293132 181293186 -21035161 + AT_rich Low_complexity Low_complexity 1 54 0 496 269 64 124 chr4 181293191 181293351 -21034996 - HAL1 LINE L1 -1198 1309 1141 276 30 0 0 chr4 181293351 181293384 -21034963 + (TG)n Simple_repeat Simple_repeat 2 34 0 1573 174 36 14 chr4 181293388 181293664 -21034683 - AluJo SINE Alu -30 282 1 496 269 64 124 chr4 181293664 181294030 -21034317 - HAL1 LINE L1 -1369 1138 810 267 152 0 0 chr4 181294785 181294831 -21033516 + CT-rich Low_complexity Low_complexity 1 46 0 522 259 59 41 chr4 181294858 181295078 -21033269 + MLT1J LTR MaLR 287 510 -1 242 200 12 25 chr4 181295425 181295505 -21032842 + (TA)n Simple_repeat Simple_repeat 2 80 0 297 314 86 29 chr4 181295814 181295954 -21032393 - L2 LINE L2 -540 2774 2627 484 207 0 41 chr4 181295994 181296115 -21032232 + MER20 DNA MER1_type 1 116 -103 1403 108 33 0 chr4 181296564 181296777 -21031570 - HSMAR2 DNA Mariner -1 1301 1082 256 352 93 0 chr4 181296780 181296888 -21031459 - L2 LINE L2 -292 3021 2904 316 240 154 0 chr4 181297574 181297678 -21030669 + L2 LINE L2 3194 3313 0 26 0 0 0 chr4 181297768 181297794 -21030553 + AT_rich Low_complexity Low_complexity 1 26 0 366 251 117 49 chr4 181297851 181298014 -21030333 - MIR SINE MIR 0 262 89 246 208 0 28 chr4 181298967 181299039 -21029308 + (TTTAA)n Simple_repeat Simple_repeat 1 70 0 26 0 0 0 chr4 181299170 181299196 -21029151 + AT_rich Low_complexity Low_complexity 1 26 0 2360 227 63 46 chr4 181299863 181300533 -21027814 - MER76 LTR ERV 0 688 8 21 57 0 0 chr4 181300707 181300742 -21027605 + AT_rich Low_complexity Low_complexity 1 35 0 2282 71 7 3 chr4 181301200 181301510 -21026837 - AluY SINE Alu 0 311 1 344 328 61 37 chr4 181302423 181302970 -21025377 + L1MEd LINE L1 891 1543 -947 2332 87 3 0 chr4 181304128 181304440 -21023907 - AluSp SINE Alu 0 313 1 3095 25 6 0 chr4 181304741 181305104 -21023243 + L1PA4 LINE L1 5790 6154 -1 803 229 112 80 chr4 181305555 181305956 -21022391 - MLT2D LTR ERVL 0 414 1 2111 109 30 3 chr4 181306006 181306310 -21022037 + AluSx SINE Alu 1 312 0 22 35 0 0 chr4 181308669 181308698 -21019649 + AT_rich Low_complexity Low_complexity 1 29 0 4935 149 37 8 chr4 181309022 181309915 -21018432 - L1MC1 LINE L1 -11 6322 5404 1441 258 14 11 chr4 181309925 181310289 -21018058 + MLT1A1 LTR MaLR 1 365 0 364 346 116 59 chr4 181312847 181313700 -21014647 + L3 LINE CR1 41 942 -635 512 184 10 0 chr4 181313739 181313837 -21014510 - AluJ/FLAM SINE Alu -213 99 1 392 174 9 96 chr4 181314625 181314740 -21013607 - MIR SINE MIR 0 262 158 774 232 66 76 chr4 181314910 181315333 -21013014 + L1ME2 LINE L1 5733 6151 -13 300 196 216 0 chr4 181315400 181315497 -21012850 + L1MC5 LINE L1 7795 7912 -49 2182 128 0 6 chr4 181315685 181316041 -21012306 + AluSx SINE Alu 1 354 0 719 246 73 0 chr4 181316860 181317039 -21011308 - MER58A DNA MER1_type 0 224 33 260 246 0 16 chr4 181317089 181317150 -21011197 - MER5A DNA MER1_type -72 117 58 231 372 39 28 chr4 181317133 181317313 -21011034 + MIR SINE MIR 56 237 -25 * 1516 231 175 0 chr4 181317476 181317904 -21010443 - MLT1D LTR MaLR -2 503 1 2626 133 35 0 chr4 181318262 181318525 -21009822 - MER65A LTR ERV1 0 445 160 351 0 0 0 chr4 181318525 181318564 -21009783 + (TG)n Simple_repeat Simple_repeat 2 40 0 2626 133 35 0 chr4 181318564 181318728 -21009619 - MER65A LTR ERV1 -285 160 3 4555 226 43 17 chr4 181318732 181319826 -21008521 - MER65A-int LTR ERV1 0 4871 3750 295 221 29 0 chr4 181320065 181320133 -21008214 - LTR60 LTR ERV1 -516 70 1 621 264 14 0 chr4 181320135 181320279 -21008068 - MER65A-int LTR ERV1 -1120 3751 3606 261 212 0 76 chr4 181320367 181320433 -21007914 - MER65-int LTR ERV1 -1616 5589 5529 * 2256 196 104 91 chr4 181320429 181320768 -21007579 - MER65-int LTR ERV1 -1246 5085 4752 2381 84 3 0 chr4 181320768 181321066 -21007281 - AluSc SINE Alu -10 299 1 2256 196 104 91 chr4 181321066 181322064 -21006283 - MER65-int LTR ERV1 -1579 4752 2477 825 152 12 115 chr4 181322143 181322386 -21005961 - MER65-int LTR ERV1 -2868 3730 3513 1234 206 8 38 chr4 181322684 181323209 -21005138 - MER65-int LTR ERV1 -2564 2559 1720 619 197 39 35 chr4 181323219 181323422 -21004925 - MER65-int LTR ERV1 -6371 1749 1546 379 122 0 54 chr4 181323532 181323606 -21004741 - MER65-int LTR ERV1 -2377 2494 2425 5243 222 19 15 chr4 181323617 181324751 -21003596 + L1M2 LINE L1 10 1147 -5702 6001 199 47 52 chr4 181324755 181325089 -21003258 - MER65-int LTR ERV1 -2486 2385 2051 1983 134 3 7 chr4 181325089 181325387 -21002960 + AluSx SINE Alu 3 299 -13 6001 199 47 52 chr4 181325387 181326741 -21001606 - MER65-int LTR ERV1 -2820 2051 706 779 218 32 19 chr4 181326762 181326978 -21001369 - MER65-int LTR ERV1 -4275 596 378 1669 171 18 36 chr4 181327192 181327526 -21000821 - MER65A LTR ERV1 -3 442 115 29 0 0 0 chr4 181328078 181328107 -21000240 + AT_rich Low_complexity Low_complexity 1 29 0 288 189 11 32 chr4 181328672 181328767 -20999580 - L1MC4 LINE L1 -1337 6705 6613 2367 55 3 7 chr4 181331369 181331662 -20996685 + AluY SINE Alu 1 292 -19 400 243 9 54 chr4 181332074 181332185 -20996162 - MLT1J2 LTR MaLR -294 156 51 26 93 0 0 chr4 181332316 181332391 -20995956 + AT_rich Low_complexity Low_complexity 1 75 0 270 81 0 0 chr4 181332579 181332616 -20995731 + (GA)n Simple_repeat Simple_repeat 1 37 0 202 315 11 45 chr4 181333595 181333684 -20994663 + MIR3 SINE MIR 114 199 -9 38 51 0 0 chr4 181333799 181333858 -20994489 + AT_rich Low_complexity Low_complexity 1 59 0 288 0 0 0 chr4 181335654 181335686 -20992661 + (TA)n Simple_repeat Simple_repeat 1 32 0 2400 48 0 7 chr4 181335824 181336117 -20992230 - AluY SINE Alu 0 311 21 350 333 108 10 chr4 181336347 181336542 -20991805 - L2 LINE L2 -339 2975 2762 780 289 54 4 chr4 181337735 181337974 -20990373 - MIR SINE MIR -5 257 7 185 305 86 29 chr4 181338575 181338680 -20989667 - L2 LINE L2 -43 3270 3160 327 25 0 0 chr4 181339181 181339221 -20989126 + (CA)n Simple_repeat Simple_repeat 2 41 0 22 88 0 0 chr4 181339413 181339470 -20988877 + AT_rich Low_complexity Low_complexity 1 57 0 273 57 0 0 chr4 181340305 181340340 -20988007 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 256 309 170 0 chr4 181340346 181340440 -20987907 - L2 LINE L2 -4 3309 3200 36 77 0 0 chr4 181340624 181340702 -20987645 + AT_rich Low_complexity Low_complexity 1 78 0 182 380 13 0 chr4 181341667 181341746 -20986601 + MIR SINE MIR 48 127 -135 198 381 85 17 chr4 181341823 181341999 -20986348 - MIR3 SINE MIR -1 207 20 1481 170 42 11 chr4 181342275 181342434 -20985913 - AluJb SINE Alu -21 291 138 240 35 0 0 chr4 181342434 181342463 -20985884 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2124 71 0 4 chr4 181342463 181342731 -20985616 - AluY SINE Alu -27 284 18 1481 170 42 11 chr4 181342731 181342835 -20985512 - AluJb SINE Alu -173 139 19 904 253 69 25 chr4 181343045 181343544 -20984803 - MER34 LTR ERV1 0 542 1 331 221 236 16 chr4 181343970 181344097 -20984250 + L2 LINE L2 3154 3308 -5 28 29 0 0 chr4 181347552 181347587 -20980760 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr4 181348114 181348138 -20980209 + AT_rich Low_complexity Low_complexity 1 24 0 443 208 195 45 chr4 181348973 181349127 -20979220 - MER5A DNA MER1_type 0 189 13 206 148 19 0 chr4 181349175 181349229 -20979118 + (TA)n Simple_repeat Simple_repeat 2 56 0 459 0 0 0 chr4 181349247 181349298 -20979049 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1927 129 0 11 chr4 181349299 181349586 -20978761 - AluSx SINE Alu -26 286 3 1554 199 0 3 chr4 181349916 181350218 -20978129 - AluJb SINE Alu -11 301 1 2142 92 4 0 chr4 181351528 181351840 -20976507 - AluSp SINE Alu 0 313 1 1254 237 25 33 chr4 181352180 181352310 -20976037 + MLT1A1 LTR MaLR 2 132 -233 2226 98 0 0 chr4 181352310 181352606 -20975741 - AluSx SINE Alu -16 296 1 1254 237 25 33 chr4 181352606 181352842 -20975505 + MLT1A1 LTR MaLR 132 365 0 2143 122 67 8 chr4 181353293 181353669 -20974678 - MER48 LTR ERV1 0 398 1 423 30 15 30 chr4 181353832 181353899 -20974448 + (TA)n Simple_repeat Simple_repeat 2 67 0 497 344 42 5 chr4 181356383 181356572 -20971775 - MER91A DNA MER1_type 0 196 1 701 316 161 16 chr4 181356772 181357447 -20970900 - L2 LINE L2 -212 3060 2288 183 204 0 0 chr4 181357447 181357491 -20970856 + (TG)n Simple_repeat Simple_repeat 1 44 0 213 190 17 17 chr4 181358009 181358067 -20970280 + (TA)n Simple_repeat Simple_repeat 2 59 0 366 61 0 0 chr4 181358222 181358271 -20970076 + (CA)n Simple_repeat Simple_repeat 2 50 0 282 343 29 7 chr4 181358293 181358433 -20969914 - L2 LINE L2 -1636 1678 1536 404 288 17 76 chr4 181358476 181358712 -20969635 - L1MC4 LINE L1 -1 8041 7820 182 316 51 31 chr4 181358836 181358934 -20969413 - L2 LINE L2 -1901 1413 1314 24 0 0 0 chr4 181360345 181360369 -20967978 + AT_rich Low_complexity Low_complexity 1 24 0 247 292 4 146 chr4 181362331 181362564 -20965783 - MIR SINE MIR -14 248 49 2085 86 46 7 chr4 181363349 181363629 -20964718 + AluSg SINE Alu 3 293 -17 371 295 74 8 chr4 181364117 181364239 -20964108 + MIR3 SINE MIR 13 142 -66 438 291 88 20 chr4 181364260 181364408 -20963939 + MER5B DNA MER1_type 2 159 -19 2837 10 0 3 chr4 181364847 181365160 -20963187 + AluYb8 SINE Alu 1 312 -6 740 133 0 0 chr4 181365436 181365574 -20962773 - AluSc SINE Alu 0 314 177 653 184 30 8 chr4 181365649 181365891 -20962456 + (ATGGTG)n Simple_repeat Simple_repeat 1 247 0 400 340 95 14 chr4 181366268 181366562 -20961785 + L3 LINE CR1 1255 1572 -5 483 318 62 6 chr4 181367067 181367246 -20961101 - MIR SINE MIR -54 208 20 1852 111 54 90 chr4 181367330 181367679 -20960668 + THE1C LTR MaLR 1 336 -39 1798 151 7 20 chr4 181367679 181367984 -20960363 - AluSx SINE Alu -11 301 1 1852 111 54 90 chr4 181367984 181368023 -20960324 + THE1C LTR MaLR 336 375 0 1475 173 52 38 chr4 181368717 181369006 -20959341 + AluJb SINE Alu 1 293 -19 1550 171 72 79 chr4 181369187 181369356 -20958991 + MLT1B LTR MaLR 3 172 -218 2166 125 3 0 chr4 181369356 181369667 -20958680 - AluSx SINE Alu 0 312 1 1550 171 72 79 chr4 181369667 181369888 -20958459 + MLT1B LTR MaLR 172 390 0 231 347 0 0 chr4 181370413 181370485 -20957862 - L2 LINE L2 -262 3051 2980 675 311 106 64 chr4 181370966 181371515 -20956832 - L2 LINE L2 -343 2971 2400 1911 138 40 0 chr4 181372250 181372526 -20955821 - AluSx SINE Alu -15 297 11 251 219 0 0 chr4 181372526 181372567 -20955780 - AluJ/monomer SINE Alu -261 41 1 2503 43 7 3 chr4 181373228 181373527 -20954820 + AluY SINE Alu 1 300 -11 1513 206 3 0 chr4 181373698 181373980 -20954367 + AluJo SINE Alu 21 303 -9 232 211 0 0 chr4 181374897 181374949 -20953398 + L1MC4 LINE L1 6652 6703 -1339 * 242 322 0 0 chr4 181374919 181375009 -20953338 - L1MC4 LINE L1 -1339 6703 6614 411 295 188 19 chr4 181375222 181375429 -20952918 + MIR SINE MIR 6 247 -15 2543 81 53 0 chr4 181375465 181375824 -20952523 - L1PA7 LINE L1 -8 6146 5769 * 7868 12 0 0 chr4 181375823 181376983 -20951364 - L1PA2 LINE L1 0 6155 4995 5910 81 1 9 chr4 181376983 181378260 -20950087 - L1PA7 LINE L1 -370 5784 4521 * 6046 84 29 17 chr4 181378258 181378882 -20949465 + L1P LINE L1 3612 4252 -1894 2356 73 3 7 chr4 181378882 181379184 -20949163 - AluY SINE Alu -10 301 1 6046 84 29 17 chr4 181379184 181379444 -20948903 + L1P LINE L1 4252 4507 -1639 42 20 0 0 chr4 181379656 181379705 -20948642 + AT_rich Low_complexity Low_complexity 1 49 0 30 0 0 0 chr4 181379905 181379935 -20948412 + AT_rich Low_complexity Low_complexity 1 30 0 1224 253 65 63 chr4 181380873 181380962 -20947385 + LTR40a LTR ERVL 1 88 -431 2456 71 3 0 chr4 181380962 181381257 -20947090 - AluSc SINE Alu -13 296 1 1224 253 65 63 chr4 181381257 181381661 -20946686 + LTR40a LTR ERVL 88 495 -24 1299 184 189 35 chr4 181381855 181382198 -20946149 - MSTD LTR MaLR 0 396 1 3205 218 59 23 chr4 181383310 181384105 -20944242 + L1MB5 LINE L1 5343 6166 -8 22 0 0 0 chr4 181384577 181384599 -20943748 + AT_rich Low_complexity Low_complexity 1 22 0 409 324 14 7 chr4 181385563 181385702 -20942645 - L2 LINE L2 0 3272 3133 270 81 0 0 chr4 181386976 181387013 -20941334 + (TAA)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr4 181387438 181387463 -20940884 + AT_rich Low_complexity Low_complexity 1 25 0 186 350 10 41 chr4 181388001 181388098 -20940249 + L2 LINE L2 1861 1954 -1360 232 353 144 28 chr4 181388243 181388707 -20939640 + L2 LINE L2 2315 2832 -482 221 302 42 21 chr4 181389033 181389129 -20939218 + L2 LINE L2 3175 3272 0 29 60 0 0 chr4 181389150 181389200 -20939147 + AT_rich Low_complexity Low_complexity 1 50 0 22628 189 27 28 chr4 181389544 181390637 -20937710 + L1PA12 LINE L1 1 1094 -6475 210 37 0 0 chr4 181390637 181390664 -20937683 + (CAA)n Simple_repeat Simple_repeat 1 27 0 22628 189 27 28 chr4 181390664 181390745 -20937602 + L1PA12 LINE L1 1094 1174 -6395 2416 66 7 3 chr4 181390745 181391048 -20937299 + AluY SINE Alu 1 304 -7 22628 189 27 28 chr4 181391048 181394992 -20933355 + L1PA12 LINE L1 1174 6451 -1118 2313 86 7 7 chr4 181394992 181395293 -20933054 + AluY SINE Alu 1 301 -10 22628 189 27 28 chr4 181395293 181395730 -20932617 + L1PA12 LINE L1 6451 6887 -682 377 288 153 71 chr4 181396068 181396349 -20931998 + L2 LINE L2 2968 3271 -1 274 248 96 51 chr4 181396367 181396524 -20931823 + MIR SINE MIR 99 262 0 207 100 0 0 chr4 181396921 181396951 -20931396 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 207 325 12 12 chr4 181397119 181397199 -20931148 - MIR3 SINE MIR -31 177 98 2097 114 3 3 chr4 181398339 181398667 -20929680 - AluSc SINE Alu 0 330 3 25 51 0 0 chr4 181400593 181400632 -20927715 + AT_rich Low_complexity Low_complexity 1 39 0 2228 108 3 13 chr4 181400902 181401209 -20927138 - AluSp SINE Alu -9 304 1 383 208 0 0 chr4 181401742 181401814 -20926533 - MER94 DNA DNA -62 72 1 1043 224 108 12 chr4 181401839 181402183 -20926164 - Charlie4a DNA MER1_type -37 471 95 243 243 0 27 chr4 181403182 181403256 -20925091 + (TATG)n Simple_repeat Simple_repeat 1 72 0 583 311 55 69 chr4 181403681 181403969 -20924378 - L2 LINE L2 -167 3146 2874 2364 75 20 0 chr4 181403969 181404274 -20924073 - AluY SINE Alu 0 311 1 583 311 55 69 chr4 181404274 181404578 -20923769 - L2 LINE L2 -439 2874 2567 579 290 77 32 chr4 181404777 181405025 -20923322 + MIR SINE MIR 4 262 0 216 338 38 0 chr4 181405854 181405934 -20922413 + L3 LINE CR1 987 1069 -508 193 270 175 0 chr4 181406027 181406090 -20922257 + L3 LINE CR1 1247 1320 -257 7469 218 34 59 chr4 181407327 181408796 -20919551 - L1MC2 LINE L1 -11 8173 6670 1545 234 31 0 chr4 181408796 181409150 -20919197 - MLT1A1 LTR MaLR 0 365 1 7469 218 34 59 chr4 181409150 181409330 -20919017 - L1MC2 LINE L1 -1514 6670 6487 2029 130 10 0 chr4 181409330 181409622 -20918725 - AluSg SINE Alu -15 295 1 7469 218 34 59 chr4 181409622 181409826 -20918521 - L1MC2 LINE L1 -1697 6487 6280 2386 84 0 10 chr4 181409826 181410134 -20918213 - AluSp SINE Alu -8 305 1 7469 218 34 59 chr4 181410134 181411520 -20916827 - L1MC2 LINE L1 -1904 6280 5008 2597 267 86 27 chr4 181411526 181411667 -20916680 - L1MC2 LINE L1 -2875 3689 3558 2231 117 3 0 chr4 181411667 181411976 -20916371 - AluSg SINE Alu 0 310 1 2597 267 86 27 chr4 181411976 181413840 -20914507 - L1MC2 LINE L1 -3006 3558 1597 4531 121 47 41 chr4 181413846 181414621 -20913726 - MER4E LTR ERV1 0 779 1 2700 267 78 32 chr4 181414622 181415841 -20912506 - L1MC2 LINE L1 -4848 1197 41 216 0 0 0 chr4 181416363 181416387 -20911960 + (TA)n Simple_repeat Simple_repeat 1 24 0 527 256 32 19 chr4 181417310 181417466 -20910881 + L2 LINE L2 3154 3311 -2 233 280 220 0 chr4 181417473 181417573 -20910774 + L2 LINE L2 3185 3306 -7 245 226 57 28 chr4 181420103 181420209 -20908138 + Charlie8 DNA MER1_type 50 158 -2259 256 288 27 27 chr4 181420842 181420915 -20907432 + MIR SINE MIR 32 104 -158 501 273 58 0 chr4 181422623 181422762 -20905585 - MER5A DNA MER1_type -1 188 42 869 174 0 7 chr4 181422762 181422962 -20905385 + AluSg/x SINE Alu 137 335 0 267 125 0 0 chr4 181422964 181423004 -20905343 - MER5A DNA MER1_type -128 61 22 776 293 99 40 chr4 181423189 181423711 -20904636 - HAL1 LINE L1 -1 2506 2016 435 63 0 0 chr4 181423711 181423774 -20904573 + (TG)n Simple_repeat Simple_repeat 2 64 0 776 293 99 40 chr4 181423774 181424453 -20903894 - HAL1 LINE L1 -491 2016 588 308 323 71 81 chr4 181424579 181424777 -20903570 - HAL1 LINE L1 -2060 447 252 23 33 0 0 chr4 181425067 181425097 -20903250 + AT_rich Low_complexity Low_complexity 1 30 0 555 305 113 17 chr4 181426151 181426390 -20901957 + MIR SINE MIR 1 262 0 251 208 0 0 chr4 181426695 181426743 -20901604 - L2 LINE L2 0 3313 3266 2041 72 26 0 chr4 181427493 181427757 -20900590 + AluY SINE Alu 35 305 -6 339 240 136 45 chr4 181428495 181428649 -20899698 - MIR SINE MIR -48 214 47 217 283 152 11 chr4 181428914 181429006 -20899341 - L3 LINE CR1 -666 911 807 778 270 145 24 chr4 181429426 181430018 -20898329 - L1ME3A LINE L1 -195 5975 5312 1235 168 99 23 chr4 181430240 181430537 -20897810 + AluJo SINE Alu 1 317 0 466 284 89 82 chr4 181430539 181432361 -20895986 - L1ME3A LINE L1 -1109 5037 3229 2012 138 3 0 chr4 181432361 181432658 -20895689 - AluSx SINE Alu -12 300 3 466 284 89 82 chr4 181432658 181432795 -20895552 - L1ME3A LINE L1 -2917 3229 3073 1942 170 8 39 chr4 181432795 181433177 -20895170 - L1PA16 LINE L1 -9 6157 5788 466 284 89 82 chr4 181433177 181433282 -20895065 - L1ME3A LINE L1 -3073 3073 2970 2140 77 35 3 chr4 181433441 181433727 -20894620 + AluY SINE Alu 2 296 -15 192 77 0 0 chr4 181433864 181433890 -20894457 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 3809 149 15 0 chr4 181433894 181434504 -20893843 - L1PA15 LINE L1 -28 7575 6957 10244 209 13 10 chr4 181434639 181436919 -20891428 - L1PA15 LINE L1 -883 6701 4414 419 254 27 0 chr4 181436919 181437029 -20891318 - L1PA15 LINE L1 -3422 4162 4050 * 3768 220 28 29 chr4 181437025 181437377 -20890970 - L1PA15 LINE L1 -4302 3282 2931 2105 93 0 28 chr4 181437377 181437689 -20890658 - AluY SINE Alu 0 306 3 3768 220 28 29 chr4 181437689 181438412 -20889935 - L1PA15 LINE L1 -4653 2931 2179 335 338 141 24 chr4 181438945 181439315 -20889032 - L3 LINE CR1 -754 823 411 239 91 0 23 chr4 181439470 181439514 -20888833 + (TG)n Simple_repeat Simple_repeat 2 44 0 940 307 86 22 chr4 181439998 181440534 -20887813 + L2 LINE L2 2567 3131 -182 194 237 93 52 chr4 181443829 181443926 -20884421 - MIR SINE MIR -55 207 107 252 59 0 0 chr4 181443963 181443997 -20884350 + (TA)n Simple_repeat Simple_repeat 1 34 0 2442 112 13 16 chr4 181445753 181446129 -20882218 + THE1C LTR MaLR 1 375 0 8961 117 69 18 chr4 181446129 181447629 -20880718 + THE1C-int LTR MaLR 1 1576 -4 1299 151 12 23 chr4 181447633 181447944 -20880403 + THE1C LTR MaLR 1 375 0 1761 201 19 51 chr4 181448177 181448605 -20879742 - MLT2D LTR ERVL 0 414 1 416 296 75 56 chr4 181449252 181449573 -20878774 + HAL1b LINE L1 172 498 -850 21 57 0 0 chr4 181450255 181450290 -20878057 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr4 181450314 181450338 -20878009 + AT_rich Low_complexity Low_complexity 1 24 0 201 193 18 18 chr4 181451633 181451690 -20876657 + (CA)n Simple_repeat Simple_repeat 2 58 0 24 0 0 0 chr4 181452103 181452127 -20876220 + AT_rich Low_complexity Low_complexity 1 24 0 231 303 56 28 chr4 181452784 181452962 -20875385 + L1ME4a LINE L1 5934 6116 -5 183 226 94 0 chr4 181453064 181453117 -20875230 - L2 LINE L2 0 3272 3215 563 320 61 58 chr4 181453277 181454050 -20874297 + L2 LINE L2 2398 3252 -61 229 308 8 58 chr4 181455092 181455212 -20873135 - L2 LINE L2 0 3313 3200 13419 199 34 17 chr4 181455763 181460735 -20867612 - L1PB2 LINE L1 -3 6864 1811 21 36 0 0 chr4 181460876 181460904 -20867443 + AT_rich Low_complexity Low_complexity 1 28 0 595 313 79 60 chr4 181461007 181461474 -20866873 - L1MEd LINE L1 -5372 747 272 287 105 18 0 chr4 181461626 181461683 -20866664 + (TA)n Simple_repeat Simple_repeat 2 59 0 545 153 15 15 chr4 181461712 181461843 -20866504 + (TA)n Simple_repeat Simple_repeat 2 132 0 405 307 22 62 chr4 181463129 181463308 -20865039 + MER5B DNA MER1_type 4 175 -3 214 293 57 65 chr4 181463199 181463322 -20865025 - MER5A DNA MER1_type -67 122 1 * 207 333 33 33 chr4 181464063 181464183 -20864164 + MER5A DNA MER1_type 48 167 -22 281 321 146 7 chr4 181464414 181464551 -20863796 - L2 LINE L2 -260 3053 2898 351 35 53 0 chr4 181465933 181465990 -20862357 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 23 54 0 0 chr4 181466160 181466197 -20862150 + AT_rich Low_complexity Low_complexity 1 37 0 200 354 25 13 chr4 181466258 181466337 -20862010 + L3 LINE CR1 1497 1576 -1 262 229 0 43 chr4 181466551 181466621 -20861726 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 232 333 0 0 chr4 181466623 181466710 -20861637 - L1MC4 LINE L1 -1341 6701 6615 240 326 0 11 chr4 181466716 181466808 -20861539 + (TATATG)n Simple_repeat Simple_repeat 6 96 0 182 276 18 6 chr4 181466809 181466979 -20861368 + (TA)n Simple_repeat Simple_repeat 1 172 0 1613 222 16 22 chr4 181467105 181467470 -20860877 + MLT1A2 LTR MaLR 10 372 -2 1839 114 72 14 chr4 181468236 181468526 -20859821 - AluSq SINE Alu -6 307 1 258 32 0 0 chr4 181468662 181468693 -20859654 + (TG)n Simple_repeat Simple_repeat 2 32 0 450 132 0 0 chr4 181468797 181468865 -20859482 - AluS SINE Alu -245 68 1 1771 174 42 0 chr4 181468906 181469240 -20859107 - MER7A DNA MER2_type 0 346 1 244 241 19 0 chr4 181469489 181469543 -20858804 + GA-rich Low_complexity Low_complexity 5 59 0 26 0 0 0 chr4 181469827 181469853 -20858494 + AT_rich Low_complexity Low_complexity 1 26 0 310 319 47 43 chr4 181469907 181470142 -20858205 + MER106A DNA MER1_type 1 236 0 389 264 46 22 chr4 181470563 181470806 -20857541 + MER46C DNA MER2_type 1 280 -58 345 338 103 14 chr4 181470881 181471094 -20857253 - MIR SINE MIR -9 253 22 818 277 56 0 chr4 181471958 181472189 -20856158 + MIR SINE MIR 1 244 -18 1942 135 4 0 chr4 181472286 181472567 -20855780 + AluSx SINE Alu 1 282 -30 360 300 85 41 chr4 181472703 181472933 -20855414 + MLT1J LTR MaLR 101 418 -197 21 36 0 0 chr4 181473464 181473492 -20854855 + AT_rich Low_complexity Low_complexity 1 28 0 231 240 109 46 chr4 181474605 181474780 -20853567 - HAL1 LINE L1 -113 2394 2209 735 298 89 41 chr4 181474805 181475346 -20853001 - HAL1 LINE L1 -363 2144 1578 4217 204 16 18 chr4 181475357 181476864 -20851483 + L1MB2 LINE L1 4664 6166 -5 25 0 0 0 chr4 181477088 181477113 -20851234 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr4 181477169 181477204 -20851143 + AT_rich Low_complexity Low_complexity 1 35 0 1843 165 139 69 chr4 181477422 181477496 -20850851 - MLT1D LTR MaLR 0 505 438 2199 76 0 36 chr4 181477496 181477797 -20850550 + AluY SINE Alu 7 296 -15 1843 165 139 69 chr4 181477797 181478027 -20850320 - MLT1D LTR MaLR -67 438 225 1935 99 3 55 chr4 181478027 181478320 -20850027 + AluSx SINE Alu 3 280 -32 216 0 0 0 chr4 181478321 181478345 -20850002 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1843 165 139 69 chr4 181478345 181478498 -20849849 - MLT1D LTR MaLR -279 226 13 549 251 97 16 chr4 181478617 181479069 -20849278 + L1ME LINE L1 5090 5594 -572 215 342 53 74 chr4 181479089 181479552 -20848795 - L2 LINE L2 -408 2906 2395 22 0 0 0 chr4 181480279 181480301 -20848046 + AT_rich Low_complexity Low_complexity 1 22 0 580 231 8 88 chr4 181480886 181481124 -20847223 - L1PB4 LINE L1 -1 6155 5937 * 2049 259 86 5 chr4 181481103 181481767 -20846580 - L1PB4 LINE L1 -999 5147 4430 21 36 0 0 chr4 181481897 181481925 -20846422 + AT_rich Low_complexity Low_complexity 1 28 0 2250 88 0 3 chr4 181484706 181485002 -20843345 - AluY SINE Alu -16 295 1 344 336 38 8 chr4 181485191 181485322 -20843025 + L2 LINE L2 3179 3313 0 224 143 0 54 chr4 181487312 181487368 -20840979 + (TATAA)n Simple_repeat Simple_repeat 5 57 0 191 204 19 0 chr4 181487532 181487586 -20840761 + GA-rich Low_complexity Low_complexity 2 56 0 22 35 0 0 chr4 181488503 181488532 -20839815 + AT_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chr4 181490320 181490351 -20837996 + AT_rich Low_complexity Low_complexity 1 31 0 191 36 36 0 chr4 181490459 181490487 -20837860 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 278 0 0 0 chr4 181490487 181490520 -20837827 - L1PA2 LINE L1 -11 6144 6112 24 0 0 0 chr4 181490697 181490721 -20837626 + AT_rich Low_complexity Low_complexity 1 24 0 1973 131 7 10 chr4 181491746 181492043 -20836304 + AluSx SINE Alu 1 296 -16 239 64 0 85 chr4 181492115 181492162 -20836185 + (T)n Simple_repeat Simple_repeat 1 43 0 2072 118 7 7 chr4 181492550 181492846 -20835501 + AluSx SINE Alu 1 296 -16 263 64 0 64 chr4 181492918 181492965 -20835382 + (T)n Simple_repeat Simple_repeat 1 44 0 957 271 38 49 chr4 181493314 181493783 -20834564 - L1MEc LINE L1 -1941 4274 3811 * 42423 50 4 3 chr4 181493777 181499923 -20828424 - L1PA4 LINE L1 -6 6149 4 491 323 71 0 chr4 181499928 181500154 -20828193 - L1MEc LINE L1 -2392 3823 3582 381 310 63 28 chr4 181500250 181500399 -20827948 - L1MEc LINE L1 -4177 2219 2056 2228 121 0 0 chr4 181500399 181500705 -20827642 - AluSg SINE Alu -3 307 2 381 310 63 28 chr4 181500705 181500810 -20827537 - L1MEc LINE L1 -4340 2056 1956 881 254 41 28 chr4 181500971 181501262 -20827085 - L1MA9 LINE L1 -38 6274 5980 182 205 179 51 chr4 181501523 181501601 -20826746 + L2 LINE L2 3226 3313 0 431 379 57 3 chr4 181501661 181501943 -20826404 - L2 LINE L2 -7 3306 3010 35 41 0 0 chr4 181502748 181502797 -20825550 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 181502896 181502917 -20825430 + AT_rich Low_complexity Low_complexity 1 21 0 2098 117 0 0 chr4 181503515 181503828 -20824519 + AluSx SINE Alu 1 313 0 4999 184 40 26 chr4 181503878 181506052 -20822295 - L1PB1 LINE L1 0 6151 3840 187 357 0 0 chr4 181506336 181506392 -20821955 + L2 LINE L2 3257 3312 -1 23 0 0 0 chr4 181507139 181507162 -20821185 + AT_rich Low_complexity Low_complexity 1 23 0 1921 151 0 10 chr4 181507680 181507979 -20820368 - AluSx SINE Alu -16 296 1 23 0 0 0 chr4 181508021 181508044 -20820303 + AT_rich Low_complexity Low_complexity 1 23 0 22 88 0 0 chr4 181508252 181508309 -20820038 + AT_rich Low_complexity Low_complexity 1 57 0 301 220 153 8 chr4 181508315 181508433 -20819914 + L1ME LINE L1 5297 5431 -733 22 0 0 0 chr4 181508873 181508895 -20819452 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 181510197 181510225 -20818122 + AT_rich Low_complexity Low_complexity 1 28 0 2280 59 10 0 chr4 181510540 181510828 -20817519 - AluY SINE Alu -18 293 3 2361 84 0 7 chr4 181512009 181512318 -20816029 - AluSx SINE Alu -5 307 1 2004 121 45 0 chr4 181512669 181512959 -20815388 - AluSp SINE Alu -10 303 1 22 56 0 0 chr4 181515030 181515066 -20813281 + AT_rich Low_complexity Low_complexity 1 36 0 2117 92 7 3 chr4 181515829 181516111 -20812236 + AluSq SINE Alu 1 283 -30 23 0 0 0 chr4 181516830 181516853 -20811494 + AT_rich Low_complexity Low_complexity 1 23 0 3035 290 45 16 chr4 181517153 181518318 -20810029 + L1M4b LINE L1 18 1253 -5606 1773 179 25 6 chr4 181518327 181518652 -20809695 + MER44D DNA MER2_type 1 601 -8 1575 219 16 43 chr4 181518672 181519139 -20809208 + L1M4b LINE L1 1260 1818 -5129 3786 147 74 16 chr4 181519147 181519819 -20808528 + MER50 LTR ERV1 1 711 -23 586 239 0 54 chr4 181519835 181519857 -20808490 + L1M4b LINE L1 1737 1759 -5096 2108 137 114 5 chr4 181519857 181520243 -20808104 - MSTA LTR MaLR 0 428 1 586 239 0 54 chr4 181520243 181520442 -20807905 + L1M4b LINE L1 1759 1946 -4909 881 273 43 35 chr4 181521887 181522374 -20805973 + L1M4b LINE L1 3348 3838 -3119 302 314 60 0 chr4 181522471 181522754 -20805593 + L1M4b LINE L1 4018 4317 -2640 369 295 42 21 chr4 181523009 181523294 -20805053 + L1MDa LINE L1 2204 2494 -4046 * 1066 278 80 5 chr4 181523288 181523712 -20804635 + L1MDa LINE L1 3047 3502 -3038 1276 278 77 26 chr4 181523728 181524565 -20803782 - L1MEc LINE L1 -3616 2599 1767 * 5829 232 23 11 chr4 181524534 181526387 -20801960 - L1PA15-16 LINE L1 -3222 4362 2471 6235 258 57 8 chr4 181526439 181528018 -20800329 - L1PA15-16 LINE L1 -5925 1656 1 760 234 153 20 chr4 181528133 181528526 -20799821 - L1MEc LINE L1 -5063 2702 2258 876 107 0 0 chr4 181528685 181528806 -20799541 - AluSg/x SINE Alu -9 303 183 3730 203 31 10 chr4 181528807 181529634 -20798713 - L1MB1 LINE L1 -28 6140 5296 243 326 0 0 chr4 181529654 181529743 -20798604 - L1MA3 LINE L1 -28 6277 6189 10206 214 36 65 chr4 181529746 181530532 -20797815 - L1PA15-16 LINE L1 -181 6825 6017 2240 116 3 0 chr4 181530532 181530842 -20797505 + AluSp SINE Alu 1 311 -2 10206 214 36 65 chr4 181530842 181531516 -20796831 - L1PA15-16 LINE L1 -989 6017 5325 276 30 0 0 chr4 181531516 181531549 -20796798 + (CTACT)n Simple_repeat Simple_repeat 3 35 0 10206 214 36 65 chr4 181531549 181532392 -20795955 - L1PA15-16 LINE L1 -1681 5325 4459 854 70 5 2 chr4 181532392 181532604 -20795743 - AluY SINE Alu -15 296 51 10206 214 36 65 chr4 181532604 181533674 -20794673 - L1PA15-16 LINE L1 -2547 4459 3359 2092 95 13 16 chr4 181533674 181533978 -20794369 - AluSx SINE Alu -4 308 6 10206 214 36 65 chr4 181533978 181536652 -20791695 - L1PA15-16 LINE L1 -3647 3359 703 626 0 14 0 chr4 181536652 181536726 -20791621 + (CA)n Simple_repeat Simple_repeat 2 76 0 10206 214 36 65 chr4 181536726 181537372 -20790975 - L1PA15-16 LINE L1 -6303 703 40 2628 211 6 2 chr4 181537394 181537933 -20790414 - L1 LINE L1 -1984 4162 3622 1799 275 92 31 chr4 181537933 181538601 -20789746 - L1MEc LINE L1 -5568 2197 1572 2647 0 0 0 chr4 181538601 181538886 -20789461 + AluYa5 SINE Alu 22 306 -5 1799 275 92 31 chr4 181538886 181538903 -20789444 - L1MEc LINE L1 -6193 1572 1557 2163 122 19 32 chr4 181538903 181539272 -20789075 + THE1B LTR MaLR 1 364 0 1799 275 92 31 chr4 181539272 181539333 -20789014 - L1MEc LINE L1 -6208 1557 1404 35 24 0 0 chr4 181539643 181539685 -20788662 + AT_rich Low_complexity Low_complexity 1 42 0 241 305 19 29 chr4 181539919 181540024 -20788323 + MIR3 SINE MIR 105 208 0 588 325 119 22 chr4 181540168 181540528 -20787819 + MLT1I LTR MaLR 9 403 -6 184 29 29 29 chr4 181540540 181540574 -20787773 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr4 181541244 181541265 -20787082 + AT_rich Low_complexity Low_complexity 1 21 0 336 373 100 9 chr4 181541871 181542091 -20786256 + L2 LINE L2 2582 2821 -493 213 313 60 94 chr4 181542072 181542305 -20786042 + L2 LINE L2 3004 3228 -44 * 480 281 41 78 chr4 181542392 181542634 -20785713 - MIR SINE MIR 0 262 30 1288 242 61 35 chr4 181543088 181543431 -20784916 - LTR16C LTR ERVL 0 491 140 279 289 215 56 chr4 181543672 181543956 -20784391 + L2 LINE L2 2307 2635 -679 202 292 82 64 chr4 181543978 181544149 -20784198 + L2 LINE L2 3121 3294 -19 188 65 0 32 chr4 181544158 181544189 -20784158 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 1929 154 6 6 chr4 181544392 181544703 -20783644 - AluSx SINE Alu -1 311 1 31 68 0 0 chr4 181546656 181546715 -20781632 + AT_rich Low_complexity Low_complexity 1 59 0 625 69 0 23 chr4 181547160 181547247 -20781100 + AluSg/x SINE Alu 212 296 -16 25 0 0 0 chr4 181547247 181547272 -20781075 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr4 181548138 181548159 -20780188 + AT_rich Low_complexity Low_complexity 1 21 0 271 269 134 17 chr4 181548313 181548432 -20779915 + MIR SINE MIR 51 183 -79 471 118 0 0 chr4 181548593 181548669 -20779678 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 401 266 252 0 chr4 181550405 181550548 -20777799 + MER5A DNA MER1_type 11 189 0 950 180 0 0 chr4 181550576 181550726 -20777621 + AluSg/x SINE Alu 137 286 -26 242 160 20 0 chr4 181551132 181551182 -20777165 + (TA)n Simple_repeat Simple_repeat 2 52 0 210 319 101 8 chr4 181554091 181554210 -20774137 - MIR3 SINE MIR -6 202 73 189 74 0 0 chr4 181555025 181555052 -20773295 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 306 0 0 0 chr4 181555051 181555085 -20773262 + (CA)n Simple_repeat Simple_repeat 2 35 0 189 171 0 0 chr4 181555464 181555499 -20772848 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 302 297 11 11 chr4 181555545 181555636 -20772711 + MIR SINE MIR 3 93 -169 1498 112 13 30 chr4 181555818 181556051 -20772296 - MER30 DNA MER1_type 0 230 2 1297 264 66 40 chr4 181556257 181556788 -20771559 + L1PA14 LINE L1 5464 6008 -153 4135 126 45 0 chr4 181556908 181557560 -20770787 + L1PA13 LINE L1 5476 6156 -7 320 255 342 0 chr4 181559873 181560034 -20768313 + MIR SINE MIR 47 262 0 35 95 0 0 chr4 181560358 181560463 -20767884 + AT_rich Low_complexity Low_complexity 1 105 0 360 346 154 33 chr4 181560467 181561170 -20767177 + L2 LINE L2 2047 2834 -480 577 210 67 72 chr4 181561402 181561597 -20766750 + MIR SINE MIR 63 256 -6 21 0 0 0 chr4 181561802 181561823 -20766524 + AT_rich Low_complexity Low_complexity 1 21 0 1369 219 16 16 chr4 181562189 181562495 -20765852 + AluJo SINE Alu 3 308 -4 203 171 0 0 chr4 181562866 181562901 -20765446 + (TAGA)n Simple_repeat Simple_repeat 1 35 0 285 197 78 134 chr4 181562975 181563075 -20765272 + L2 LINE L2 3180 3271 -42 3272 80 30 2 chr4 181563075 181563548 -20764799 - LTR19A LTR ERV1 0 486 1 285 197 78 134 chr4 181563548 181563589 -20764758 + L2 LINE L2 3271 3313 0 24 67 0 0 chr4 181564451 181564496 -20763851 + AT_rich Low_complexity Low_complexity 1 45 0 2023 149 0 7 chr4 181566149 181566458 -20761889 + AluSg SINE Alu 1 307 -3 4951 104 53 55 chr4 181566648 181567471 -20760876 - LTR12 LTR ERV1 0 826 5 4532 136 17 26 chr4 181567487 181568459 -20759888 - Harlequin LTR ERV1 -2 8397 7418 1853 74 0 25 chr4 181568459 181568703 -20759644 + AluY SINE Alu 65 302 -9 4532 136 17 26 chr4 181568703 181568980 -20759367 - Harlequin LTR ERV1 -981 7418 504 2288 174 88 91 chr4 181568974 181569857 -20758490 - Harlequin LTR ERV1 -5176 1720 840 * 36116 91 9 12 chr4 181569824 181575038 -20753309 - Harlequin LTR ERV1 -1960 478 1 378 242 10 0 chr4 181575039 181575138 -20753209 - LTR30 LTR ERV1 -79 643 544 4175 142 182 26 chr4 181575138 181576149 -20752198 - pTR5 LTR ERV1 -413 2025 743 182 323 126 16 chr4 181576380 181576507 -20751840 + MIR SINE MIR 117 257 -5 2832 16 0 0 chr4 181577300 181577612 -20750735 + AluYb8 SINE Alu 1 312 -6 302 0 26 0 chr4 181577705 181577743 -20750604 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr4 181579096 181579117 -20749230 + AT_rich Low_complexity Low_complexity 1 21 0 7761 233 51 55 chr4 181579427 181580157 -20748190 - L1MB7 LINE L1 0 6420 5689 2110 112 7 3 chr4 181580157 181580451 -20747896 - AluSq SINE Alu -18 295 1 7761 233 51 55 chr4 181580451 181582970 -20745377 - L1MB7 LINE L1 -731 5689 3161 547 279 8 0 chr4 181582970 181583092 -20745255 - FLAM_A SINE Alu -10 123 1 7761 233 51 55 chr4 181583092 181583152 -20745195 - L1MB7 LINE L1 -3259 3161 3102 225 0 0 0 chr4 181583152 181583177 -20745170 + (TG)n Simple_repeat Simple_repeat 2 26 0 7761 233 51 55 chr4 181583177 181584379 -20743968 - L1MB7 LINE L1 -3318 3102 1923 926 228 8 50 chr4 181584390 181584631 -20743716 - MLT1A2 LTR MaLR 0 374 144 1807 229 107 14 chr4 181584641 181585098 -20743249 - MLT2B3 LTR ERVL -14 508 69 401 162 0 0 chr4 181585192 181585260 -20743087 - MLT2B3 LTR ERVL -486 68 1 558 184 28 50 chr4 181585260 181585401 -20742946 - MLT1A2 LTR MaLR -227 138 1 1469 254 40 29 chr4 181585401 181585945 -20742402 - L1MB7 LINE L1 -4562 1822 1273 202 250 17 0 chr4 181587461 181587521 -20740826 + A-rich Low_complexity Low_complexity 1 61 0 24 32 0 0 chr4 181588260 181588291 -20740056 + AT_rich Low_complexity Low_complexity 1 31 0 1534 217 0 0 chr4 181588524 181588791 -20739556 + Tigger7 DNA MER2_type 1 267 -2220 513 258 0 0 chr4 181588790 181588887 -20739460 + Tigger7 DNA MER2_type 2391 2487 0 * 872 220 66 101 chr4 181589296 181589517 -20738830 - MLT1A1 LTR MaLR 0 365 161 898 187 0 29 chr4 181589517 181589688 -20738659 - FRAM SINE Alu 0 166 1 872 220 66 101 chr4 181589688 181589844 -20738503 - MLT1A1 LTR MaLR -204 161 1 2173 125 0 0 chr4 181590176 181590472 -20737875 - AluSx SINE Alu -16 296 1 22 0 0 0 chr4 181590645 181590667 -20737680 + AT_rich Low_complexity Low_complexity 1 22 0 418 183 24 12 chr4 181590672 181590754 -20737593 - AluJ/FLAM SINE Alu -227 85 3 292 380 0 0 chr4 181590900 181591021 -20737326 + MIR SINE MIR 29 149 -113 2041 132 30 15 chr4 181591029 181591363 -20736984 + MER1B DNA MER1_type 1 339 0 2356 109 0 0 chr4 181592603 181592915 -20735432 - AluSq SINE Alu -1 312 1 21 36 0 0 chr4 181593514 181593542 -20734805 + AT_rich Low_complexity Low_complexity 1 28 0 219 69 0 0 chr4 181594485 181594514 -20733833 + (T)n Simple_repeat Simple_repeat 1 29 0 27 0 0 0 chr4 181595104 181595131 -20733216 + AT_rich Low_complexity Low_complexity 1 27 0 2026 125 0 4 chr4 181595740 181596060 -20732287 - AluSc SINE Alu 0 319 1 26 50 0 0 chr4 181597196 181597236 -20731111 + AT_rich Low_complexity Low_complexity 1 40 0 27 29 0 0 chr4 181597529 181597563 -20730784 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr4 181597762 181597785 -20730562 + AT_rich Low_complexity Low_complexity 1 23 0 183 156 0 0 chr4 181599367 181599399 -20728948 + (CA)n Simple_repeat Simple_repeat 2 33 0 476 133 12 0 chr4 181600080 181600163 -20728184 + GA-rich Low_complexity Low_complexity 1 84 0 23 33 0 0 chr4 181601646 181601676 -20726671 + AT_rich Low_complexity Low_complexity 1 30 0 264 163 0 0 chr4 181602375 181602418 -20725929 - MER53 DNA DNA -145 44 2 268 206 9 9 chr4 181603499 181603606 -20724741 + (TA)n Simple_repeat Simple_repeat 2 108 0 31 26 0 0 chr4 181604093 181604131 -20724216 + AT_rich Low_complexity Low_complexity 1 38 0 514 255 38 0 chr4 181604326 181604468 -20723879 - FLAM_A SINE Alu 0 151 6 23 33 0 0 chr4 181604567 181604597 -20723750 + AT_rich Low_complexity Low_complexity 1 30 0 204 273 23 0 chr4 181604769 181604813 -20723534 - MIR SINE MIR -109 99 55 24 0 0 0 chr4 181606584 181606608 -20721739 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr4 181606661 181606697 -20721650 + AT_rich Low_complexity Low_complexity 1 36 0 285 365 0 0 chr4 181608024 181608120 -20720227 - MIR SINE MIR -11 251 156 27 0 0 0 chr4 181608253 181608280 -20720067 + AT_rich Low_complexity Low_complexity 1 27 0 535 150 88 0 chr4 181608392 181608505 -20719842 - L1MB2 LINE L1 -2 6169 6047 180 0 0 0 chr4 181608836 181608856 -20719491 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 668 276 28 33 chr4 181609933 181610147 -20718200 - L2 LINE L2 0 3313 3101 197 33 33 0 chr4 181610167 181610197 -20718150 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1662 181 7 3 chr4 181610207 181610489 -20717858 - AluJb SINE Alu -23 289 7 385 264 87 106 chr4 181611076 181611341 -20717006 - MLT1L LTR MaLR -236 379 120 356 307 24 31 chr4 181612301 181612428 -20715919 + MIR SINE MIR 25 150 -58 335 242 94 47 chr4 181613449 181613598 -20714749 - MLT1J1 LTR MaLR -20 426 271 1824 183 101 45 chr4 181613741 181614205 -20714142 - LTR2B LTR ERV1 0 490 1 198 0 0 0 chr4 181615324 181615346 -20713001 + (TG)n Simple_repeat Simple_repeat 1 22 0 1501 154 4 0 chr4 181615592 181615819 -20712528 + AluSg/x SINE Alu 72 299 -11 277 250 117 89 chr4 181616666 181616846 -20711501 + MLT1H LTR MaLR 363 547 -2 290 322 9 9 chr4 181617452 181617567 -20710780 + MIR SINE MIR 145 259 -3 3165 74 39 0 chr4 181618873 181619341 -20709006 + L1PA8 LINE L1 5700 6184 0 33 66 0 0 chr4 181619672 181619733 -20708614 + AT_rich Low_complexity Low_complexity 1 61 0 1214 252 74 38 chr4 181620289 181620733 -20707614 + L2 LINE L2 1727 2186 -1128 980 295 93 30 chr4 181620837 181621436 -20706911 + L2 LINE L2 2664 3313 0 332 125 18 0 chr4 181621585 181621641 -20706706 - L1MA10 LINE L1 -10 6324 6268 536 149 2 22 chr4 181621648 181621757 -20706590 + L1MA10 LINE L1 6032 6132 -32 29 47 0 0 chr4 181621816 181621859 -20706488 + AT_rich Low_complexity Low_complexity 1 43 0 1126 238 98 47 chr4 181622085 181622472 -20705875 - MLT1J1 LTR MaLR 0 446 40 189 0 0 0 chr4 181624532 181624553 -20703794 + (TA)n Simple_repeat Simple_repeat 2 22 0 243 254 0 0 chr4 181624737 181624767 -20703580 + GA-rich Low_complexity Low_complexity 2 31 -29 2607 97 3 3 chr4 181624767 181625128 -20703219 - THE1B LTR MaLR -3 361 1 243 254 0 0 chr4 181625128 181625156 -20703191 + GA-rich Low_complexity Low_complexity 30 60 0 1569 164 55 60 chr4 181626492 181626772 -20701575 - MLT1A1 LTR MaLR 0 365 85 1921 111 0 0 chr4 181626772 181627105 -20701242 - AluSg SINE Alu 0 353 21 1569 164 55 60 chr4 181627105 181627190 -20701157 - MLT1A1 LTR MaLR -280 85 1 255 125 0 0 chr4 181627678 181627718 -20700629 + (TA)n Simple_repeat Simple_repeat 2 41 0 213 132 0 0 chr4 181627898 181627936 -20700411 + (GA)n Simple_repeat Simple_repeat 1 38 0 1073 157 10 50 chr4 181628224 181628422 -20699925 + AluJo SINE Alu 97 286 -26 226 352 34 0 chr4 181629786 181629874 -20698473 - MIR3 SINE MIR -9 199 109 219 376 48 16 chr4 181629898 181630023 -20698324 + MIR SINE MIR 17 145 -63 470 228 18 64 chr4 181630170 181630341 -20698006 + L1ME1 LINE L1 5999 6161 -5 192 311 68 39 chr4 181632962 181633168 -20695179 - L2 LINE L2 -923 2391 2180 483 227 60 43 chr4 181634584 181634769 -20693578 - L1ME3 LINE L1 -18 6144 5957 197 346 77 29 chr4 181634848 181634952 -20693395 - L3 LINE CR1 -457 1120 1012 4276 287 100 24 chr4 181635551 181636786 -20691561 + L2 LINE L2 464 1875 -1439 333 0 0 0 chr4 181636786 181636823 -20691524 + (CA)n Simple_repeat Simple_repeat 1 37 0 4276 287 100 24 chr4 181636823 181637352 -20690995 + L2 LINE L2 1875 2362 -952 1191 165 41 0 chr4 181637375 181637593 -20690754 - L1MC1 LINE L1 -10 6323 6097 4736 150 53 0 chr4 181637593 181638408 -20689939 + L1MC1 LINE L1 5476 6333 0 1766 211 96 24 chr4 181638936 181639362 -20688985 - MER82 DNA MER2_type 0 653 197 880 228 33 0 chr4 181639654 181639834 -20688513 - MER82 DNA MER2_type -449 204 19 951 150 24 12 chr4 181639839 181640006 -20688341 - L1M3f LINE L1 -5156 172 4 393 22 0 0 chr4 181640719 181640765 -20687582 + (TA)n Simple_repeat Simple_repeat 2 47 0 2229 113 0 0 chr4 181640765 181641067 -20687280 - AluSq SINE Alu -11 302 1 240 261 134 37 chr4 181641091 181641225 -20687122 - MIR SINE MIR -3 259 113 359 306 100 83 chr4 181641475 181641776 -20686571 - L2 LINE L2 -527 2787 2482 241 267 267 0 chr4 181643511 181643616 -20684731 - L2 LINE L2 -1 3271 3139 304 363 76 0 chr4 181643733 181643904 -20684443 - MIR SINE MIR -47 215 32 283 282 25 92 chr4 181643981 181644144 -20684203 - L2 LINE L2 -188 3084 2933 2117 335 110 33 chr4 181646495 181647542 -20680805 + L2 LINE L2 1261 2226 -1087 2052 117 13 0 chr4 181647542 181647840 -20680507 + AluSp SINE Alu 5 306 -7 2117 335 110 33 chr4 181647840 181648682 -20679665 + L2 LINE L2 2226 3302 -11 1780 177 0 16 chr4 181649325 181649630 -20678717 + AluJb SINE Alu 1 300 -12 31 0 0 0 chr4 181649906 181649937 -20678410 + AT_rich Low_complexity Low_complexity 1 31 0 263 369 9 0 chr4 181649997 181650108 -20678239 + MIR3 SINE MIR 65 176 -32 1994 128 7 3 chr4 181650522 181650819 -20677528 + AluSx SINE Alu 1 298 -14 185 302 16 16 chr4 181651575 181651638 -20676709 - L2 LINE L2 0 3272 3210 32154 108 10 56 chr4 181652523 181658976 -20669371 + L1PA7 LINE L1 12 6150 -4 2566 204 2 25 chr4 181659398 181659928 -20668419 + MLT2B1 LTR ERVL 1 518 -2 243 317 67 42 chr4 181660249 181660369 -20667978 + L2 LINE L2 3150 3272 0 21 0 0 0 chr4 181660787 181660808 -20667539 + AT_rich Low_complexity Low_complexity 1 21 0 265 336 103 33 chr4 181661114 181661385 -20666962 - L2 LINE L2 -1 3312 3023 726 202 0 8 chr4 181661673 181661802 -20666545 - FLAM_C SINE Alu -15 128 1 183 80 0 0 chr4 181661877 181661902 -20666445 + (TAA)n Simple_repeat Simple_repeat 1 25 0 258 292 62 0 chr4 181661903 181661968 -20666379 - MIR SINE MIR -1 261 193 748 103 9 0 chr4 181662027 181662134 -20666213 + AluSq/x SINE Alu 1 108 -204 29 28 0 0 chr4 181662937 181662973 -20665374 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr4 181663106 181663129 -20665218 + AT_rich Low_complexity Low_complexity 1 23 0 1100 255 115 19 chr4 181663967 181664386 -20663961 - MLT1H LTR MaLR 0 549 91 710 59 0 20 chr4 181664506 181664607 -20663740 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 1706 174 11 0 chr4 181664610 181664891 -20663456 - AluJo SINE Alu -28 284 1 612 261 64 0 chr4 181665504 181665661 -20662686 + LTR50 LTR ERVL 1 167 -628 1342 190 6 74 chr4 181666023 181666349 -20661998 + AluJo SINE Alu 1 304 -8 28 0 0 0 chr4 181666476 181666504 -20661843 + AT_rich Low_complexity Low_complexity 1 28 0 400 342 32 0 chr4 181666817 181666972 -20661375 - MIR SINE MIR -3 259 100 183 276 35 0 chr4 181667563 181667621 -20660726 - MIR3 SINE MIR -4 204 145 312 283 69 119 chr4 181668845 181669004 -20659343 - MIR SINE MIR -14 248 98 207 294 59 0 chr4 181669077 181669145 -20659202 - MIR SINE MIR -72 190 119 752 294 17 78 chr4 181669156 181669553 -20658794 + MLT1C LTR MaLR 3 376 -14 1532 279 130 33 chr4 181669722 181670512 -20657835 + L2 LINE L2 1433 2299 -1015 779 285 85 65 chr4 181670512 181671163 -20657184 + L2 LINE L2 2655 3307 -6 23 33 0 0 chr4 181671334 181671364 -20656983 + AT_rich Low_complexity Low_complexity 1 30 0 1607 175 90 26 chr4 181672738 181673081 -20655266 - MLT1A1 LTR MaLR 0 365 1 1846 44 13 18 chr4 181673556 181673783 -20654564 - AluY SINE Alu -10 301 76 57 0 0 0 chr4 181673845 181673902 -20654445 + AT_rich Low_complexity Low_complexity 1 57 0 294 125 18 18 chr4 181674112 181674168 -20654179 + MLT1A1 LTR MaLR 1 56 -309 24 0 0 0 chr4 181674352 181674376 -20653971 + AT_rich Low_complexity Low_complexity 1 24 0 4352 175 19 45 chr4 181674730 181676346 -20652001 + L1PB4 LINE L1 4571 6153 -3 1240 219 80 38 chr4 181676676 181676964 -20651383 + AluJo SINE Alu 1 300 -12 845 288 118 65 chr4 181677228 181677645 -20650702 - MLT1H LTR MaLR -1 548 110 3908 141 69 44 chr4 181677645 181679061 -20649286 - LTR12 LTR ERV1 -29 1683 31 371 233 12 0 chr4 181679072 181679158 -20649189 - MLT1H LTR MaLR -422 127 41 407 311 82 0 chr4 181679394 181679516 -20648831 + L2 LINE L2 3141 3272 0 22 35 0 0 chr4 181680976 181681005 -20647342 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr4 181681654 181681690 -20646657 + AT_rich Low_complexity Low_complexity 1 36 0 282 207 15 172 chr4 181681947 181682145 -20646202 - MER112 DNA MER1_type -53 207 41 23 33 0 0 chr4 181682216 181682246 -20646101 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 181683616 181683637 -20644710 + AT_rich Low_complexity Low_complexity 1 21 0 1141 96 11 0 chr4 181683826 181684004 -20644343 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2055 121 26 7 chr4 181684015 181684321 -20644026 - AluSx SINE Alu 0 312 1 1163 286 86 40 chr4 181684914 181685417 -20642930 - MLT1G LTR MaLR -64 526 1 203 261 0 0 chr4 181685886 181685932 -20642415 + (CA)n Simple_repeat Simple_repeat 1 46 0 205 240 66 8 chr4 181686051 181686172 -20642175 + (TATATG)n Simple_repeat Simple_repeat 2 129 0 345 266 19 70 chr4 181687524 181687682 -20640665 - L2 LINE L2 0 3313 3164 318 342 0 26 chr4 181688605 181688719 -20639628 - L2 LINE L2 0 3313 3203 361 333 138 3 chr4 181689249 181689434 -20638913 + MIR SINE MIR 37 246 -16 2093 163 45 30 chr4 181691083 181691624 -20636723 - MLT2A2 LTR ERVL -2 552 1 433 267 30 0 chr4 181692354 181692455 -20635892 - MER5A DNA MER1_type -77 112 9 29 28 0 0 chr4 181693000 181693036 -20635311 + AT_rich Low_complexity Low_complexity 1 36 0 1744 146 43 18 chr4 181693041 181693322 -20635025 + AluJo SINE Alu 1 288 -24 27 0 0 0 chr4 181693351 181693378 -20634969 + AT_rich Low_complexity Low_complexity 1 27 0 297 340 113 7 chr4 181693416 181693557 -20634790 + MIR3 SINE MIR 44 199 -9 225 270 27 14 chr4 181694014 181694088 -20634259 - MER5B DNA MER1_type -20 158 84 2335 93 3 0 chr4 181694621 181694921 -20633426 - AluSc SINE Alu -8 301 1 22 35 0 0 chr4 181695024 181695053 -20633294 + AT_rich Low_complexity Low_complexity 1 29 0 188 314 14 0 chr4 181695607 181695677 -20632670 - L3 LINE CR1 -1211 366 296 23 54 0 0 chr4 181695737 181695774 -20632573 + AT_rich Low_complexity Low_complexity 1 37 0 1432 233 25 17 chr4 181695786 181696146 -20632201 + MLT1A1 LTR MaLR 3 365 0 2505 211 165 57 chr4 181696146 181696772 -20631575 + L1MDa LINE L1 1013 1570 -4970 1775 193 0 0 chr4 181696772 181697068 -20631279 + AluJb SINE Alu 1 296 -16 2505 211 165 57 chr4 181697068 181697614 -20630733 + L1MDa LINE L1 1570 2312 -4228 1713 148 23 26 chr4 181697619 181697924 -20630423 + L1MD2 LINE L1 6041 6344 -15 200 245 85 32 chr4 181699378 181699472 -20628875 - MIR SINE MIR -83 179 81 222 37 0 0 chr4 181700160 181700187 -20628160 + (TA)n Simple_repeat Simple_repeat 2 28 0 2065 99 3 31 chr4 181700519 181700813 -20627534 + AluSx SINE Alu 17 302 -10 1256 177 112 62 chr4 181701033 181701355 -20626992 - MER67C LTR ERV1 -372 338 1 3276 159 32 2 chr4 181702563 181703148 -20625199 + LTR26 LTR ERV1 1 603 0 434 290 72 47 chr4 181703192 181703468 -20624879 + L2 LINE L2 2524 2806 -508 3919 147 37 0 chr4 181703490 181704114 -20624233 - MER39B LTR ERV1 -6 647 1 420 316 53 13 chr4 181704117 181704269 -20624078 + L2 LINE L2 2886 3043 -270 17362 155 36 14 chr4 181704881 181711551 -20616796 - L1PB1 LINE L1 0 6867 49 340 267 207 35 chr4 181711961 181712193 -20616154 - LTR16A LTR ERVL 0 450 179 204 264 39 84 chr4 181712441 181712596 -20615751 + L2 LINE L2 3151 3298 -15 266 306 49 56 chr4 181712657 181712801 -20615546 + MER5A DNA MER1_type 18 160 -18 259 143 0 18 chr4 181713056 181713112 -20615235 + L1MA9 LINE L1 6258 6312 0 2907 156 22 8 chr4 181713127 181713660 -20614687 + L1MB2 LINE L1 5623 6163 -8 26 30 0 0 chr4 181715011 181715044 -20613303 + AT_rich Low_complexity Low_complexity 1 33 0 207 69 0 0 chr4 181715563 181715592 -20612755 + (CA)n Simple_repeat Simple_repeat 2 30 0 329 218 32 8 chr4 181715608 181715732 -20612615 + (TA)n Simple_repeat Simple_repeat 2 128 0 210 143 0 0 chr4 181715951 181715986 -20612361 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 252 250 119 0 chr4 181716574 181716658 -20611689 - MIR SINE MIR -65 197 104 23 0 0 0 chr4 181716800 181716823 -20611524 + AT_rich Low_complexity Low_complexity 1 23 0 1936 125 14 0 chr4 181718855 181719134 -20609213 + AluSp SINE Alu 1 283 -30 383 277 58 93 chr4 181719264 181719694 -20608653 - L1ME3A LINE L1 -2 6168 5754 1978 137 0 0 chr4 181719824 181720124 -20608223 - AluJb SINE Alu 0 306 7 360 304 47 7 chr4 181720125 181720273 -20608074 - L1ME3A LINE L1 -817 5329 5176 813 214 36 178 chr4 181720308 181720707 -20607640 - L1ME3A LINE L1 -19 6151 5861 1674 98 0 9 chr4 181720707 181720932 -20607415 - AluSg/x SINE Alu -5 307 85 813 214 36 178 chr4 181720932 181721122 -20607225 - L1ME3A LINE L1 -309 5861 5646 765 296 95 40 chr4 181721121 181722046 -20606301 - L1ME3A LINE L1 -870 5276 4257 * 1740 181 3 3 chr4 181722046 181722345 -20606002 + AluJo SINE Alu 1 299 -13 765 296 95 40 chr4 181722345 181722508 -20605839 - L1ME3A LINE L1 -1889 4257 4104 318 278 81 69 chr4 181722790 181722963 -20605384 - MIR SINE MIR -78 184 10 21 0 0 0 chr4 181724450 181724471 -20603876 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr4 181724785 181724831 -20603516 + (TA)n Simple_repeat Simple_repeat 2 47 0 1973 103 48 0 chr4 181724836 181725109 -20603238 - AluY SINE Alu -25 286 1 293 289 92 7 chr4 181725281 181725423 -20602924 - MIR SINE MIR -27 235 82 255 189 0 0 chr4 181725450 181725503 -20602844 - L1MC4 LINE L1 -1339 6703 6651 1862 137 41 4 chr4 181726136 181726317 -20602030 - AluSx SINE Alu 0 314 117 438 15 29 29 chr4 181726317 181726385 -20601962 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 1862 137 41 4 chr4 181726385 181726507 -20601840 - AluSx SINE Alu -197 117 1 21 36 0 0 chr4 181726875 181726903 -20601444 + AT_rich Low_complexity Low_complexity 1 28 0 216 351 97 0 chr4 181726961 181727075 -20601272 + MIR SINE MIR 65 189 -73 238 231 0 0 chr4 181727852 181727920 -20600427 - MER45C DNA AcHobo 0 953 886 1545 287 120 30 chr4 181727984 181728542 -20599805 - MER45C DNA AcHobo -345 608 1 1676 198 82 26 chr4 181728596 181729011 -20599336 + MLT1C LTR MaLR 30 467 0 2162 117 3 3 chr4 181729480 181729778 -20598569 - AluSx SINE Alu -14 298 1 2314 106 0 0 chr4 181729782 181730085 -20598262 - AluSg SINE Alu -4 306 4 1098 273 74 32 chr4 181730402 181730805 -20597542 - LTR16C LTR ERVL -1 490 71 2175 104 10 0 chr4 181731043 181731331 -20597016 - AluSg SINE Alu -19 291 1 319 366 22 0 chr4 181731335 181731469 -20596878 - MIR3 SINE MIR -1 207 71 1863 144 50 19 chr4 181732359 181732721 -20595626 + THE1C LTR MaLR 1 373 -2 3856 95 8 66 chr4 181732723 181733347 -20595000 + THE1B-int LTR MaLR 1 588 -992 2548 93 11 11 chr4 181733345 181733711 -20594636 + THE1B-int LTR MaLR 1215 1580 0 * 2183 125 16 48 chr4 181733711 181734087 -20594260 + THE1B LTR MaLR 1 364 0 2190 92 3 3 chr4 181734644 181734952 -20593395 + AluY SINE Alu 1 308 0 228 149 0 0 chr4 181736316 181736363 -20591984 + (TA)n Simple_repeat Simple_repeat 2 48 0 553 283 24 54 chr4 181736363 181736505 -20591842 - MIR SINE MIR -58 204 68 2012 117 33 3 chr4 181736505 181736805 -20591542 - AluSc SINE Alu 0 309 1 553 283 24 54 chr4 181736805 181736867 -20591480 - MIR SINE MIR -194 68 6 247 105 0 0 chr4 181736867 181736905 -20591442 - MER67C LTR ERV1 0 710 673 27 0 0 0 chr4 181736912 181736939 -20591408 + AT_rich Low_complexity Low_complexity 1 27 0 3018 193 9 47 chr4 181736939 181737677 -20590670 - MER4D LTR ERV1 -26 877 62 879 157 38 0 chr4 181737663 181737822 -20590525 - MER49 LTR ERV1 -629 294 130 * 3032 152 73 41 chr4 181737866 181738443 -20589904 - MER50 LTR ERV1 -23 711 116 2367 104 14 1 chr4 181738443 181738990 -20589357 - LTR9 LTR ERV1 0 612 1 576 143 20 0 chr4 181738995 181739093 -20589254 - MER50 LTR ERV1 -634 100 1 * 674 160 8 15 chr4 181739093 181739223 -20589124 - MER72 LTR ERV1 -589 133 5 2728 172 50 59 chr4 181739227 181739276 -20589071 - MER67C LTR ERV1 -33 677 629 2204 85 3 20 chr4 181739276 181739570 -20588777 + AluSg SINE Alu 1 289 -21 2728 172 50 59 chr4 181739570 181740200 -20588147 - MER67C LTR ERV1 -81 629 4 278 297 136 58 chr4 181740385 181740540 -20587807 - MIR SINE MIR -68 194 28 191 313 31 0 chr4 181742140 181742204 -20586143 + L2 LINE L2 3207 3272 0 193 309 0 18 chr4 181742442 181742497 -20585850 - MIR SINE MIR -13 249 196 263 284 37 0 chr4 181742555 181742636 -20585711 - MIR SINE MIR -87 175 92 228 346 30 20 chr4 181742731 181742832 -20585515 - L2 LINE L2 0 3313 3212 549 171 38 0 chr4 181742833 181742938 -20585409 + L1PB4 LINE L1 6040 6148 -8 267 152 0 0 chr4 181743250 181743296 -20585051 + (TA)n Simple_repeat Simple_repeat 1 46 0 1193 172 17 4 chr4 181743299 181743531 -20584816 - L1MB3 LINE L1 -14 6169 5935 23 33 0 0 chr4 181744150 181744180 -20584167 + AT_rich Low_complexity Low_complexity 1 30 0 629 275 24 0 chr4 181745503 181745670 -20582677 - L1ME1 LINE L1 -29 6137 5967 634 294 53 29 chr4 181746592 181746997 -20581350 - L1ME1 LINE L1 -430 5691 5280 871 205 0 0 chr4 181747057 181747232 -20581115 - FRAM SINE Alu 0 170 1 353 287 134 13 chr4 181747314 181747471 -20580876 - MER5B DNA MER1_type -1 177 2 216 341 35 35 chr4 181747511 181747596 -20580751 - MER5A DNA MER1_type -95 94 10 27 29 0 0 chr4 181747905 181747939 -20580408 + AT_rich Low_complexity Low_complexity 1 34 0 319 136 49 62 chr4 181749279 181749360 -20578987 - MADE1 DNA Mariner 0 80 1 260 260 26 13 chr4 181749584 181749661 -20578686 + MER116 DNA Mariner 3 80 0 1327 188 116 0 chr4 181750243 181750520 -20577827 + AluJo SINE Alu 1 309 -3 1249 279 143 20 chr4 181750911 181751625 -20576722 - L1ME3A LINE L1 -1 6169 5368 554 309 0 6 chr4 181751823 181751988 -20576359 - MIR SINE MIR -31 231 68 769 148 60 22 chr4 181752892 181753074 -20575273 + MER53 DNA DNA 1 189 0 201 121 0 0 chr4 181753213 181753246 -20575101 + (A)n Simple_repeat Simple_repeat 1 33 0 379 286 84 8 chr4 181753632 181753751 -20574596 + MIR SINE MIR 41 168 -94 2499 239 52 24 chr4 181753754 181754779 -20573568 + L1ME2 LINE L1 5022 6080 -84 1810 185 39 26 chr4 181754779 181755163 -20573184 + MLT1B LTR MaLR 2 390 0 2499 239 52 24 chr4 181755163 181755251 -20573096 + L1ME2 LINE L1 6080 6164 0 2351 57 7 0 chr4 181755527 181755807 -20572540 - AluY SINE Alu -4 307 26 1314 173 47 76 chr4 181756664 181756965 -20571382 + AluJo SINE Alu 1 292 -20 585 281 61 53 chr4 181757284 181757440 -20570907 - MIR SINE MIR -3 259 99 2872 13 0 0 chr4 181757440 181757754 -20570593 + AluYb8 SINE Alu 1 314 -4 585 281 61 53 chr4 181757754 181757843 -20570504 - MIR SINE MIR -163 99 12 28 48 0 0 chr4 181757965 181758007 -20570340 + AT_rich Low_complexity Low_complexity 1 42 0 727 227 6 11 chr4 181758145 181758321 -20570026 + MER5B DNA MER1_type 4 178 0 333 353 84 26 chr4 181758401 181758591 -20569756 + MIR SINE MIR 8 208 -54 389 353 11 5 chr4 181759369 181759556 -20568791 - MERVL LTR ERVL -153 5332 5145 649 298 24 8 chr4 181759635 181759883 -20568464 - MERVL LTR ERVL -597 5167 4916 1758 199 44 3 chr4 181761389 181761730 -20566617 - MLT1A1 LTR MaLR 0 365 11 2675 192 7 14 chr4 181761750 181762339 -20566008 - L1 LINE L1 -2177 3969 3385 * 3241 250 34 9 chr4 181762337 181763365 -20564982 + L1 LINE L1 2318 3371 -2775 1854 170 0 7 chr4 181764021 181764315 -20564032 + AluSx SINE Alu 1 292 -20 2702 23 0 7 chr4 181764942 181765247 -20563100 + AluY SINE Alu 1 303 -8 1498 122 36 0 chr4 181765270 181765491 -20562856 - MER30 DNA MER1_type 0 230 2 1818 175 57 3 chr4 181765576 181765908 -20562439 - MLT1A1 LTR MaLR -15 350 1 195 300 119 50 chr4 181766115 181766275 -20562072 - L2 LINE L2 -905 2409 2239 493 182 20 0 chr4 181766853 181766952 -20561395 + MLT1B LTR MaLR 1 101 -289 * 995 138 0 66 chr4 181766949 181767071 -20561276 + MLT1B LTR MaLR 222 330 -60 3291 120 29 29 chr4 181767071 181767595 -20560752 - MER1A DNA MER1_type 0 527 4 995 138 0 66 chr4 181767595 181767653 -20560694 + MLT1B LTR MaLR 330 390 0 324 331 64 26 chr4 181768777 181768986 -20559361 - MIR SINE MIR -48 214 2 66 14 0 0 chr4 181770866 181770939 -20557408 + AT_rich Low_complexity Low_complexity 1 73 0 300 53 0 0 chr4 181771389 181771427 -20556920 + (CA)n Simple_repeat Simple_repeat 2 39 0 244 322 69 29 chr4 181771844 181772018 -20556329 - MIR SINE MIR -53 209 29 420 336 65 23 chr4 181772945 181773162 -20555185 + MIR SINE MIR 6 231 -31 594 103 0 0 chr4 181776245 181776332 -20552015 + (GGAA)n Simple_repeat Simple_repeat 4 90 0 725 310 122 61 chr4 181776366 181776972 -20551375 + L1MEd LINE L1 425 1067 -5052 1991 94 69 0 chr4 181777212 181777522 -20550825 - AluSp SINE Alu 0 329 1 789 218 6 6 chr4 181778660 181778816 -20549531 + MIR SINE MIR 2 157 -105 337 207 69 4 chr4 181778832 181778903 -20549444 + MER2 DNA MER2_type 6 78 -161 261 204 0 0 chr4 181778903 181778952 -20549395 - MER2 DNA MER2_type 0 345 297 310 349 0 0 chr4 181778998 181779104 -20549243 + MIR SINE MIR 155 260 -2 372 22 0 0 chr4 181779195 181779240 -20549107 + (CA)n Simple_repeat Simple_repeat 1 45 0 246 116 0 0 chr4 181779593 181779636 -20548711 + (CA)n Simple_repeat Simple_repeat 1 43 0 228 279 207 58 chr4 181779830 181780038 -20548309 - MIR SINE MIR -17 245 7 2350 66 23 3 chr4 181780080 181780381 -20547966 + AluSg SINE Alu 1 307 -3 495 337 95 36 chr4 181781057 181781478 -20546869 - L2 LINE L2 -850 2464 2019 195 42 0 0 chr4 181782255 181782279 -20546068 + (T)n Simple_repeat Simple_repeat 1 24 0 1297 146 10 10 chr4 181782290 181782495 -20545852 - AluJb SINE Alu -102 210 6 21 36 0 0 chr4 181782535 181782563 -20545784 + AT_rich Low_complexity Low_complexity 1 28 0 257 231 0 15 chr4 181782981 181783046 -20545301 + (CA)n Simple_repeat Simple_repeat 2 65 0 278 359 117 26 chr4 181783241 181783506 -20544841 - L2 LINE L2 -462 2852 2564 210 37 0 0 chr4 181785096 181785123 -20543224 + (TC)n Simple_repeat Simple_repeat 2 28 0 250 277 39 100 chr4 181786868 181786998 -20541349 - MLT1J2 LTR MaLR -66 384 263 402 286 55 39 chr4 181787245 181787301 -20541046 + MER5A DNA MER1_type 4 58 -131 2219 144 48 50 chr4 181787301 181787759 -20540588 - MSTB2 LTR MaLR 0 457 1 402 286 55 39 chr4 181787759 181787884 -20540463 + MER5A DNA MER1_type 58 188 -1 492 62 0 0 chr4 181787919 181787983 -20540364 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 1410 133 5 0 chr4 181788984 181789194 -20539153 - AluSp SINE Alu 0 313 103 2307 91 0 3 chr4 181789332 181789630 -20538717 + AluSg1 SINE Alu 1 297 -12 1684 195 25 22 chr4 181790124 181790488 -20537859 - MLT1A1 LTR MaLR 0 365 1 394 325 64 32 chr4 181790977 181791165 -20537182 + L3 LINE CR1 629 822 -755 232 207 17 0 chr4 181791235 181791293 -20537054 + (TA)n Simple_repeat Simple_repeat 2 60 0 1857 144 40 3 chr4 181791441 181791740 -20536607 + AluJb SINE Alu 1 310 -2 340 222 135 16 chr4 181793918 181794044 -20534303 - Charlie2 DNA MER1_type -205 2657 2517 668 221 62 29 chr4 181794197 181794405 -20533942 - Charlie2 DNA MER1_type -2579 283 69 443 133 0 0 chr4 181795004 181795079 -20533268 - MADE1 DNA Mariner -1 79 5 621 333 31 37 chr4 181795467 181795921 -20532426 + L1ME1 LINE L1 226 676 -5887 740 277 62 35 chr4 181796017 181796537 -20531810 + L1ME1 LINE L1 807 1340 -5223 1396 180 92 97 chr4 181796552 181796997 -20531350 + MSTB2 LTR MaLR 15 457 0 944 301 83 22 chr4 181796999 181797741 -20530606 + L1ME1 LINE L1 1220 2170 -4393 398 219 67 0 chr4 181797769 181797888 -20530459 + L1ME1 LINE L1 2215 2341 -4222 * 1683 227 61 54 chr4 181797885 181798441 -20529906 + L1ME1 LINE L1 5755 6314 -88 22 0 0 0 chr4 181798875 181798897 -20529450 + AT_rich Low_complexity Low_complexity 1 22 0 182 381 21 42 chr4 181799611 181799800 -20528547 + L3 LINE CR1 1334 1518 -59 255 370 82 48 chr4 181800584 181800960 -20527387 - L2 LINE L2 -15 3257 2869 1875 158 11 52 chr4 181800971 181801337 -20527010 - MER61C LTR ERV1 0 434 84 1871 85 4 0 chr4 181801506 181801752 -20526595 + AluSp SINE Alu 67 313 0 923 51 0 56 chr4 181801817 181801995 -20526352 + (TA)n Simple_repeat Simple_repeat 1 168 0 277 364 67 14 chr4 181802160 181802369 -20525978 - L2 LINE L2 -896 2418 2199 15643 196 31 22 chr4 181802473 181804869 -20523478 - L1PA15 LINE L1 -72 6093 3721 225 0 0 0 chr4 181804869 181804894 -20523453 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 369 0 0 0 chr4 181804893 181804934 -20523413 + (TG)n Simple_repeat Simple_repeat 2 42 0 15643 196 31 22 chr4 181804894 181807012 -20521335 - L1PA15 LINE L1 -2444 3721 1576 254 367 17 17 chr4 181807179 181807299 -20521048 + MIR SINE MIR 17 136 -126 199 333 0 0 chr4 181807467 181807521 -20520826 + MIR SINE MIR 96 149 -113 453 309 89 73 chr4 181808318 181808849 -20519498 - L2 LINE L2 -17 3296 2692 307 73 36 0 chr4 181809332 181809384 -20518963 + (TCTA)n Simple_repeat Simple_repeat 1 110 0 307 73 36 0 chr4 181809384 181809439 -20518908 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 24 32 0 0 chr4 181811726 181811757 -20516590 + AT_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr4 181811801 181811821 -20516526 + (T)n Simple_repeat Simple_repeat 1 20 0 180 111 0 0 chr4 181812675 181812702 -20515645 + (A)n Simple_repeat Simple_repeat 1 27 0 207 0 0 0 chr4 181812713 181812736 -20515611 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2420 68 0 16 chr4 181812743 181813052 -20515295 - AluY SINE Alu -7 304 1 2141 128 0 0 chr4 181813996 181814292 -20514055 - AluSc SINE Alu -13 296 1 21 0 0 0 chr4 181814382 181814403 -20513944 + AT_rich Low_complexity Low_complexity 1 21 0 942 181 104 22 chr4 181816439 181816621 -20511726 - AluJo SINE Alu -111 201 5 419 309 73 0 chr4 181816628 181816793 -20511554 - HAL1 LINE L1 -2187 320 144 237 322 42 14 chr4 181817055 181817198 -20511149 - L1PA15 LINE L1 -982 1525 1379 1860 283 131 36 chr4 181817342 181818605 -20509742 + HAL1 LINE L1 1096 2477 -30 23 0 0 0 chr4 181818630 181818653 -20509694 + AT_rich Low_complexity Low_complexity 1 23 0 218 261 14 14 chr4 181818653 181818722 -20509625 + GA-rich Low_complexity Low_complexity 3 71 0 244 43 21 43 chr4 181819519 181819566 -20508781 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 933 134 6 23 chr4 181820074 181820246 -20508101 - L1PA16 LINE L1 0 6166 5998 232 250 14 0 chr4 181820264 181820336 -20508011 - L1P LINE L1 -2936 3210 3138 8922 203 29 8 chr4 181820492 181823286 -20505061 - L1PA16 LINE L1 -181 5985 3138 578 165 0 0 chr4 181823721 181823812 -20504535 + AluJ/FLAM SINE Alu 1 91 -221 185 146 21 0 chr4 181824407 181824455 -20503892 + (TG)n Simple_repeat Simple_repeat 2 50 0 2023 122 3 14 chr4 181826384 181826679 -20501668 - AluSx SINE Alu -20 292 1 1711 120 0 0 chr4 181827190 181827423 -20500924 + THE1B LTR MaLR 132 364 0 10050 114 50 8 chr4 181827423 181828939 -20499408 + THE1B-int LTR MaLR 1 1580 0 1872 151 38 6 chr4 181828939 181829256 -20499091 + THE1B LTR MaLR 1 327 -37 507 298 94 30 chr4 181829564 181829799 -20498548 + MER102b DNA MER1_type 92 341 0 430 340 163 19 chr4 181830659 181831071 -20497276 - L3 LINE CR1 -177 1400 930 2019 169 167 2 chr4 181831559 181831991 -20496356 + MLT1D LTR MaLR 1 503 -2 695 326 65 21 chr4 181832998 181833289 -20495058 + L2 LINE L2 68 371 -2943 895 289 26 57 chr4 181833332 181833681 -20494666 - MER69 DNA AcHobo -873 353 16 261 217 0 0 chr4 181833690 181833759 -20494588 + L2 LINE L2 847 915 -2399 3028 196 47 27 chr4 181833780 181834490 -20493857 - L1MC4a LINE L1 0 7808 7085 4992 284 102 25 chr4 181834490 181835664 -20492683 + L2 LINE L2 918 2001 -1312 1774 179 10 52 chr4 181835664 181836071 -20492276 - MLT1B LTR MaLR 0 390 1 4992 284 102 25 chr4 181836071 181837106 -20491241 + L2 LINE L2 2001 3287 -26 5604 140 26 8 chr4 181837110 181838088 -20490259 + L1MA8 LINE L1 5290 6284 -7 189 74 0 0 chr4 181838100 181838127 -20490220 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 220 336 82 18 chr4 181838131 181838241 -20490106 + MIR3 SINE MIR 90 206 -2 1868 275 52 29 chr4 181838630 181839362 -20488985 - L1ME3A LINE L1 -5 6165 5417 236 203 109 0 chr4 181839381 181839445 -20488902 - L1ME3 LINE L1 -21 6141 6071 1658 242 103 46 chr4 181839599 181840822 -20487525 - L1ME3 LINE L1 -71 6091 4799 852 226 60 110 chr4 181840851 181841351 -20486996 - MER39 LTR ERV1 0 707 13 1473 227 57 17 chr4 181841357 181841833 -20486514 - L1ME3 LINE L1 -1367 4779 4285 23 0 0 0 chr4 181843046 181843069 -20485278 + AT_rich Low_complexity Low_complexity 1 23 0 332 298 106 14 chr4 181843717 181843858 -20484489 - MIR SINE MIR -56 206 53 194 325 75 17 chr4 181846406 181846526 -20481821 - L2 LINE L2 -17 3296 3170 480 207 18 9 chr4 181846678 181846789 -20481558 + L2 LINE L2 3190 3301 -12 287 221 179 29 chr4 181847205 181847345 -20481002 + L1MEd LINE L1 540 700 -5419 203 372 41 6 chr4 181847627 181847799 -20480548 - L2 LINE L2 -237 3035 2858 2232 113 3 7 chr4 181848492 181848802 -20479545 - AluSq SINE Alu -4 309 1 209 382 73 27 chr4 181849093 181849203 -20479144 + L2 LINE L2 3143 3257 -15 735 255 99 5 chr4 181850131 181850343 -20478004 - MIR SINE MIR -21 241 10 583 278 88 10 chr4 181850672 181850877 -20477470 - MIR SINE MIR -1 261 41 1587 154 40 9 chr4 181851323 181851714 -20476633 - LTR45B LTR ERV1 0 489 3 214 231 0 0 chr4 181852303 181852342 -20476005 + polypurine Low_complexity Low_complexity 3 41 0 2833 10 0 0 chr4 181853149 181853459 -20474888 + AluYa5 SINE Alu 1 310 -1 2520 67 0 3 chr4 181853474 181853786 -20474561 + AluY SINE Alu 1 311 0 238 255 61 41 chr4 181854113 181854211 -20474136 + MIR SINE MIR 42 141 -67 459 203 14 108 chr4 181854287 181854435 -20473912 - MIR SINE MIR -15 247 114 1933 142 11 25 chr4 181854516 181854875 -20473472 - L1MA4 LINE L1 0 6300 5947 1239 218 63 18 chr4 181854900 181855280 -20473067 + MLT2C1 LTR ERVL 1 397 0 1844 179 18 84 chr4 181856306 181856748 -20471599 + MLT2D LTR ERVL 1 413 -1 222 263 144 25 chr4 181857088 181857206 -20471141 - L2 LINE L2 0 3272 3141 371 271 12 0 chr4 181857290 181857375 -20470972 + MER5A DNA MER1_type 11 96 -93 717 339 74 3 chr4 181857563 181857914 -20470433 + MLT1I LTR MaLR 4 379 -30 832 296 83 50 chr4 181857941 181858590 -20469757 - L2 LINE L2 -4 3309 2621 243 196 43 109 chr4 181858604 181858696 -20469651 - MLT1I LTR MaLR -318 91 6 2221 126 0 3 chr4 181858936 181859245 -20469102 + AluSx SINE Alu 1 308 -4 399 232 12 0 chr4 181860244 181860326 -20468021 + MER58C DNA MER1_type 127 209 -6 401 285 151 27 chr4 181860548 181860734 -20467613 - MLT1I LTR MaLR -118 291 83 309 348 54 32 chr4 181861395 181861616 -20466731 - HAL1b LINE L1 -614 734 509 2508 148 4 31 chr4 181861630 181862083 -20466264 + MER65A LTR ERV1 3 443 -2 914 202 197 50 chr4 181862645 181863039 -20465308 - MLT1E2 LTR MaLR -2 622 7 12709 182 30 48 chr4 181864895 181864955 -20463392 - L1PA13 LINE L1 -778 6019 5959 7699 163 8 9 chr4 181864955 181867133 -20461214 - L1PA13 LINE L1 0 6163 3968 12709 182 30 48 chr4 181867133 181867183 -20461164 - L1PA13 LINE L1 -838 5959 5910 1941 163 0 0 chr4 181867183 181867484 -20460863 - AluSx SINE Alu -11 301 1 12709 182 30 48 chr4 181867484 181870848 -20457499 - L1PA13 LINE L1 -887 5910 1069 255 307 7 93 chr4 181870858 181870998 -20457349 - MIR3 SINE MIR -15 193 66 197 333 0 0 chr4 181871015 181871066 -20457281 - L2 LINE L2 -5 3267 3217 265 390 77 12 chr4 181872728 181872897 -20455450 - L2 LINE L2 -4 3268 3089 771 164 0 8 chr4 181872934 181873068 -20455279 + FLAM_C SINE Alu 1 133 -10 2008 88 4 0 chr4 181873644 181873895 -20454452 - AluSp SINE Alu -18 295 44 978 272 71 16 chr4 181874181 181874423 -20453924 - MER58B DNA MER1_type -2094 326 62 2199 112 3 0 chr4 181874423 181874726 -20453621 + AluSq SINE Alu 1 304 -9 978 272 71 16 chr4 181874726 181874792 -20453555 - MER58B DNA MER1_type -2358 62 1 271 294 15 0 chr4 181875049 181875117 -20453230 - MIR SINE MIR -145 117 49 22 35 0 0 chr4 181875360 181875389 -20452958 + AT_rich Low_complexity Low_complexity 1 29 0 477 319 32 49 chr4 181875469 181875654 -20452693 - MIR SINE MIR -74 188 7 270 182 0 0 chr4 181875672 181875738 -20452609 + GA-rich Low_complexity Low_complexity 1 66 0 367 279 70 70 chr4 181875776 181875948 -20452399 + MIR3 SINE MIR 32 203 -5 21 0 0 0 chr4 181876916 181876937 -20451410 + AT_rich Low_complexity Low_complexity 1 21 0 376 171 11 11 chr4 181877797 181877885 -20450462 - MER53 DNA DNA -1 188 101 211 262 119 24 chr4 181878232 181878316 -20450031 - MIR SINE MIR -62 200 109 246 81 0 0 chr4 181879566 181879603 -20448744 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 199 269 102 65 chr4 181879614 181879722 -20448625 - L2 LINE L2 -1 3271 3160 324 338 30 8 chr4 181882239 181882405 -20445942 - MIR SINE MIR -56 152 26 2194 107 7 0 chr4 181882641 181882939 -20445408 + AluSg SINE Alu 1 300 -10 589 234 117 0 chr4 181884221 181884375 -20443972 - MER63B DNA MER1_type -264 172 1 203 276 102 71 chr4 181884628 181884755 -20443592 + MIR SINE MIR 90 220 -42 208 249 45 119 chr4 181885646 181885847 -20442500 - L2 LINE L2 -4 3309 3124 222 335 96 29 chr4 181886377 181886616 -20441731 - L2 LINE L2 -211 3061 2807 289 258 45 11 chr4 181886976 181887065 -20441282 - LTR67 LTR ERVL -348 209 118 380 292 81 14 chr4 181887551 181887760 -20440587 - L1ME LINE L1 -372 5749 5527 23 33 0 0 chr4 181887792 181887822 -20440525 + AT_rich Low_complexity Low_complexity 1 30 0 333 306 44 78 chr4 181888573 181888844 -20439503 + L2 LINE L2 2472 2733 -581 265 252 97 19 chr4 181889027 181889130 -20439217 - MER5B DNA MER1_type -51 127 17 3272 59 0 7 chr4 181889418 181889844 -20438503 - L1PA8 LINE L1 0 6172 5750 228 294 84 17 chr4 181890315 181890434 -20437913 + MIR SINE MIR 129 255 -7 2367 70 0 20 chr4 181890959 181891261 -20437086 + AluY SINE Alu 1 296 -15 2456 118 22 3 chr4 181891742 181892099 -20436248 + THE1B LTR MaLR 1 364 0 2182 168 6 6 chr4 181894214 181894572 -20433775 - MLT1A1 LTR MaLR 0 457 1 222 189 0 0 chr4 181894622 181894659 -20433688 + (TG)n Simple_repeat Simple_repeat 2 38 0 292 380 81 5 chr4 181895528 181895749 -20432598 + L3 LINE CR1 355 592 -985 22 56 0 0 chr4 181897226 181897262 -20431085 + AT_rich Low_complexity Low_complexity 1 36 0 207 204 23 0 chr4 181897627 181897671 -20430676 + (CATCT)n Simple_repeat Simple_repeat 1 45 0 938 193 183 47 chr4 181897798 181898099 -20430248 + MLT1A1 LTR MaLR 24 365 0 511 252 92 35 chr4 181898112 181898426 -20429921 - L1M4 LINE L1 -1737 4591 4260 24 32 0 0 chr4 181898427 181898458 -20429889 + AT_rich Low_complexity Low_complexity 1 31 0 8981 208 28 15 chr4 181898458 181900841 -20427506 - L1M4 LINE L1 -1964 4364 1954 3873 244 64 14 chr4 181900847 181902520 -20425827 - L1M4 LINE L1 -4107 1221 101 1840 152 140 54 chr4 181902882 181903311 -20425036 - MER31B LTR ERV1 0 466 1 1566 174 7 33 chr4 181903372 181903647 -20424700 - AluSx SINE Alu -40 272 5 735 316 24 0 chr4 181903728 181903981 -20424366 + MIR SINE MIR 4 262 0 188 262 0 0 chr4 181904200 181904242 -20424105 - L2 LINE L2 -527 2787 2746 499 275 100 50 chr4 181905223 181905760 -20422587 + L1ME4a LINE L1 5254 5829 -292 27 73 0 0 chr4 181906022 181906077 -20422270 + AT_rich Low_complexity Low_complexity 1 55 0 935 302 76 47 chr4 181906197 181906821 -20421526 - L2 LINE L2 -7 3306 2653 1094 251 145 36 chr4 181906822 181907352 -20420995 - L2 LINE L2 -815 2499 1912 1457 63 0 0 chr4 181907588 181907779 -20420568 - L1PA4 LINE L1 -3 6152 5962 219 259 47 35 chr4 181907988 181908073 -20420274 + MIR SINE MIR 166 251 -11 407 346 38 0 chr4 181908144 181908277 -20420070 + MIR SINE MIR 17 154 -108 1506 199 83 26 chr4 181908456 181908516 -20419831 - MLT2D LTR ERVL 0 397 342 405 0 0 0 chr4 181908516 181908561 -20419786 + (TG)n Simple_repeat Simple_repeat 2 46 0 1506 199 83 26 chr4 181908561 181908911 -20419436 - MLT2D LTR ERVL -55 342 1 274 343 109 17 chr4 181908971 181909146 -20419201 + L2 LINE L2 2437 2627 -687 1143 121 0 0 chr4 181909232 181909381 -20418966 + AluSq SINE Alu 5 153 -160 1208 175 52 0 chr4 181909383 181909594 -20418753 - LTR8 LTR ERV1 -469 222 1 288 0 0 0 chr4 181909600 181909632 -20418715 + (CA)n Simple_repeat Simple_repeat 2 33 0 274 262 122 56 chr4 181909649 181909756 -20418591 + MIR SINE MIR 59 172 -90 277 111 0 0 chr4 181909934 181909979 -20418368 - L1PA6 LINE L1 -3 6151 6107 205 226 0 38 chr4 181910572 181910625 -20417722 + (CATG)n Simple_repeat Simple_repeat 3 53 0 503 244 30 71 chr4 181911372 181911569 -20416778 + MER20 DNA MER1_type 31 219 0 197 222 99 49 chr4 181911577 181911658 -20416689 + MER5C DNA MER1_type 1 85 -239 1809 167 0 20 chr4 181913636 181913942 -20414405 + AluJb SINE Alu 1 300 -12 21 57 0 0 chr4 181914074 181914109 -20414238 + AT_rich Low_complexity Low_complexity 1 35 0 297 340 10 10 chr4 181914589 181914689 -20413658 + MIR SINE MIR 47 146 -116 330 232 11 11 chr4 181914789 181914884 -20413463 + L1ME3 LINE L1 4685 4779 -1367 724 215 54 156 chr4 181914890 181915277 -20413070 + MER39 LTR ERV1 13 560 -147 2174 97 7 3 chr4 181915277 181915587 -20412760 + AluY SINE Alu 1 311 0 724 215 54 156 chr4 181915587 181915722 -20412625 + MER39 LTR ERV1 560 707 0 1643 244 103 46 chr4 181915751 181916974 -20411373 + L1ME3 LINE L1 4799 6091 -71 4002 72 30 8 chr4 181917251 181917741 -20410606 - MER41A LTR ERV1 0 554 53 1744 142 63 27 chr4 181917741 181918072 -20410275 - MER61A LTR ERV1 0 343 1 4002 72 30 8 chr4 181918072 181918127 -20410220 - MER41A LTR ERV1 -501 53 1 219 167 0 0 chr4 181920075 181920117 -20408230 + CT-rich Low_complexity Low_complexity 1 42 0 1826 214 113 11 chr4 181920418 181920876 -20407471 - MLT1D LTR MaLR 0 505 1 387 291 138 20 chr4 181920876 181921079 -20407268 + MIR SINE MIR 4 230 -32 302 130 0 0 chr4 181921515 181921561 -20406786 + MIR SINE MIR 140 185 -77 273 273 116 0 chr4 181921890 181922011 -20406336 - MLT1L LTR MaLR -27 588 454 408 304 9 0 chr4 181923333 181923445 -20404902 - L2 LINE L2 -2 3311 3199 449 211 18 28 chr4 181923452 181923561 -20404786 + MIR SINE MIR 140 247 -15 1127 205 38 117 chr4 181923606 181924153 -20404194 - LTR22 LTR ERVK -4 505 2 381 244 0 12 chr4 181924273 181924359 -20403988 - L2 LINE L2 0 3313 3229 419 322 77 39 chr4 181924976 181925339 -20403008 + L1ME LINE L1 5383 5759 -362 51 31 0 0 chr4 181925370 181925435 -20402912 + AT_rich Low_complexity Low_complexity 1 65 0 272 144 78 78 chr4 181925449 181925486 -20402861 - L1MB4 LINE L1 0 6180 6144 2048 96 57 0 chr4 181925486 181925768 -20402579 - AluY SINE Alu -13 298 1 272 144 78 78 chr4 181925768 181925820 -20402527 - L1MB4 LINE L1 -35 6145 6091 14871 191 24 41 chr4 181925856 181928371 -20399976 - L1MA8 LINE L1 -298 6175 3777 2283 101 0 3 chr4 181928371 181928669 -20399678 + AluSg SINE Alu 1 297 -13 14871 191 24 41 chr4 181928669 181930973 -20397374 - L1MA8 LINE L1 -2696 3777 1435 470 108 0 0 chr4 181930975 181931040 -20397307 + THE1C LTR MaLR 1 65 -310 2564 121 3 3 chr4 181931048 181931412 -20396935 + THE1B LTR MaLR 1 364 0 6555 160 35 42 chr4 181931414 181933146 -20395201 + THE1B-int LTR MaLR 3 1580 0 2213 137 16 22 chr4 181933146 181933258 -20395089 + THE1B LTR MaLR 1 112 -252 5632 145 29 32 chr4 181933258 181934332 -20394015 - MER11C LTR ERVK 0 1071 1 2213 137 16 22 chr4 181934332 181934584 -20393763 + THE1B LTR MaLR 112 363 -1 6093 192 45 15 chr4 181934585 181935969 -20392378 - L1MA8 LINE L1 -4065 1263 13 23 0 0 0 chr4 181935969 181935992 -20392355 + AT_rich Low_complexity Low_complexity 1 23 0 3005 111 62 53 chr4 181936097 181936701 -20391646 - MER4B LTR ERV1 0 779 1 391 275 243 0 chr4 181937481 181937670 -20390677 + L2 LINE L2 2743 2977 -337 230 210 32 0 chr4 181937702 181937764 -20390583 - LTR50 LTR ERVL -9 786 723 423 226 226 0 chr4 181937778 181937915 -20390432 + L1ME3A LINE L1 5947 6114 -56 2287 212 24 65 chr4 181937915 181938500 -20389847 - MER82 DNA MER2_type 0 653 93 416 264 0 0 chr4 181938523 181938610 -20389737 + MER82 DNA MER2_type 1 87 -566 240 290 109 11 chr4 181938854 181938958 -20389389 - LTR33A LTR ERVL -345 178 80 197 192 0 19 chr4 181938964 181939016 -20389331 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 275 195 208 0 chr4 181939017 181939094 -20389253 - LTR50 LTR ERVL -696 99 7 30 0 0 0 chr4 181939472 181939502 -20388845 + AT_rich Low_complexity Low_complexity 1 30 0 1268 327 63 21 chr4 181939510 181940162 -20388185 - ERVL LTR ERVL -331 5433 4755 524 317 67 29 chr4 181940164 181940372 -20387975 - ERVL LTR ERVL -1878 3886 3671 2098 281 51 34 chr4 181940390 181941156 -20387191 - ERVL LTR ERVL -2238 3526 2748 2235 323 104 13 chr4 181941200 181942268 -20386079 - ERVL LTR ERVL -2858 2627 1492 315 71 0 0 chr4 181942330 181942372 -20385975 + (TG)n Simple_repeat Simple_repeat 2 43 0 310 299 67 8 chr4 181942374 181942508 -20385839 - L1ME4a LINE L1 -201 5920 5779 283 275 39 126 chr4 181943426 181943608 -20384739 + MIR SINE MIR 25 190 -72 429 271 125 0 chr4 181943662 181943806 -20384541 + MIR SINE MIR 74 235 -27 2249 178 50 14 chr4 181944142 181944625 -20383722 + L1MA6 LINE L1 3935 4434 -1712 3231 160 22 36 chr4 181944630 181945459 -20382888 + L1MA6 LINE L1 5099 5921 -370 3101 139 75 25 chr4 181945477 181946038 -20382309 - MER6A DNA MER2_type -16 589 1 1571 166 29 16 chr4 181946038 181946352 -20381995 + L1MA6 LINE L1 5924 6241 -59 945 175 31 83 chr4 181946373 181946647 -20381700 - AluJb SINE Alu 0 312 76 278 229 125 0 chr4 181947238 181947334 -20381013 - L1M4 LINE L1 -1573 4573 4466 1461 152 50 3 chr4 181948111 181948408 -20379939 - L1MDa LINE L1 -4279 2261 1951 22 35 0 0 chr4 181949676 181949705 -20378642 + AT_rich Low_complexity Low_complexity 1 29 0 30 69 0 0 chr4 181949766 181949824 -20378523 + AT_rich Low_complexity Low_complexity 1 58 0 344 344 50 42 chr4 181949902 181950239 -20378108 - L1ME4a LINE L1 -213 5908 5569 24 53 0 0 chr4 181950346 181950384 -20377963 + AT_rich Low_complexity Low_complexity 1 38 0 399 297 63 31 chr4 181950419 181950529 -20377818 - L1ME4a LINE L1 -215 5906 5801 2175 130 58 9 chr4 181950529 181950876 -20377471 + THE1B LTR MaLR 1 364 0 399 297 63 31 chr4 181950876 181950987 -20377360 - L1ME4a LINE L1 -320 5801 5678 2179 116 0 10 chr4 181951788 181952091 -20376256 + AluSq SINE Alu 1 300 -13 381 59 59 0 chr4 181952718 181952786 -20375561 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 1896 136 27 10 chr4 181953861 181954155 -20374192 + AluSx SINE Alu 1 299 -13 373 328 14 27 chr4 181954925 181955081 -20373266 - MIR SINE MIR -65 143 24 2082 128 0 3 chr4 181955752 181956050 -20372297 + AluSx SINE Alu 1 297 -15 1105 195 51 0 chr4 181956138 181956333 -20372014 + Tigger7 DNA MER2_type 61 265 -2222 461 132 9 142 chr4 181956332 181956438 -20371909 + Tigger7 DNA MER2_type 2400 2491 0 * 283 256 56 0 chr4 181956773 181956863 -20371484 + MLT1I LTR MaLR 42 136 -273 1915 148 0 0 chr4 181957317 181957635 -20370712 - AluYb8 SINE Alu 0 318 1 2684 10 0 0 chr4 181957960 181958253 -20370094 - AluYb8 SINE Alu -25 293 1 1889 148 156 5 chr4 181959595 181959780 -20368567 + MSTA LTR MaLR 1 157 -271 363 44 0 0 chr4 181959780 181959825 -20368522 + (TC)n Simple_repeat Simple_repeat 1 45 0 1889 148 156 5 chr4 181959825 181960011 -20368336 + MSTA LTR MaLR 157 428 0 339 258 58 42 chr4 181961993 181962076 -20366271 + L1ME LINE L1 5357 5444 -677 2175 100 7 3 chr4 181962076 181962375 -20365972 - AluSp SINE Alu -13 300 1 339 258 58 42 chr4 181962375 181962411 -20365936 + L1ME LINE L1 5444 5478 -643 227 229 38 76 chr4 181962449 181962554 -20365793 + L1ME LINE L1 5566 5666 -455 29 78 0 0 chr4 181962564 181962628 -20365719 + AT_rich Low_complexity Low_complexity 1 64 0 2164 113 7 13 chr4 181965777 181966086 -20362261 - AluSg SINE Alu -3 307 1 327 264 86 36 chr4 181966266 181966406 -20361941 - L2 LINE L2 0 3313 3167 2910 146 53 0 chr4 181966469 181966955 -20361392 - MER41E LTR ERV1 0 512 1 355 327 159 26 chr4 181967411 181967763 -20360584 - L2 LINE L2 -700 2614 2216 337 270 127 69 chr4 181967970 181968100 -20360247 + MIR SINE MIR 49 196 -66 2071 113 0 7 chr4 181968100 181968421 -20359926 + AluSx SINE Alu 1 319 0 337 270 127 69 chr4 181968421 181968478 -20359869 + MIR SINE MIR 196 248 -14 410 264 24 24 chr4 181969767 181969892 -20358455 + MER5A DNA MER1_type 6 130 -59 2274 102 79 15 chr4 181970031 181970373 -20357974 - THE1B LTR MaLR 0 364 1 1006 215 128 47 chr4 181970393 181970691 -20357656 + LTR68 LTR ERV1 419 740 0 310 257 19 9 chr4 181970721 181970826 -20357521 - L1M4 LINE L1 -1417 4729 4624 1001 218 42 50 chr4 181970828 181971140 -20357207 + MLT1D LTR MaLR 3 326 -141 811 197 0 7 chr4 181971342 181971484 -20356863 - FRAM SINE Alu -36 140 1 285 295 169 18 chr4 181971762 181971928 -20356419 - MIR SINE MIR -52 210 20 5972 166 57 7 chr4 182022309 182023589 -20304758 - L1 LINE L1 -756 5390 4047 3044 103 2 33 chr4 182023689 182023833 -20304514 + PABL_B LTR ERV1 199 346 -321 1837 124 88 0 chr4 182023833 182023954 -20304393 + AluSx SINE Alu 1 110 -213 180 0 0 0 chr4 182023954 182023974 -20304373 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1837 124 88 0 chr4 182023974 182024151 -20304196 + AluSx SINE Alu 110 323 0 3044 103 2 33 chr4 182024151 182024487 -20303860 + PABL_B LTR ERV1 346 667 0 2169 130 18 6 chr4 182024502 182024832 -20303515 + MER1B DNA MER1_type 3 336 -1 590 192 69 59 chr4 182024833 182025036 -20303311 - L1MC5 LINE L1 -624 7337 7133 23 33 0 0 chr4 182025036 182025066 -20303281 + AT_rich Low_complexity Low_complexity 1 30 0 586 268 45 6 chr4 182026365 182026522 -20301825 - MIR3 SINE MIR -9 199 37 28 61 0 0 chr4 182027023 182027072 -20301275 + AT_rich Low_complexity Low_complexity 1 49 0 254 299 19 9 chr4 182027123 182027230 -20301117 + L1MC5 LINE L1 7755 7862 -99 2205 129 0 0 chr4 182029128 182029438 -20298909 - AluSx SINE Alu -2 310 1 351 0 0 0 chr4 182031228 182031267 -20297080 + (CA)n Simple_repeat Simple_repeat 2 40 0 623 283 50 35 chr4 182033040 182033298 -20295049 + L2 LINE L2 3043 3304 -9 555 105 11 11 chr4 182033314 182033409 -20294938 + (TGGA)n Simple_repeat Simple_repeat 1 95 0 2040 143 7 0 chr4 182033949 182034256 -20294091 + AluSx SINE Alu 4 312 0 1244 228 19 33 chr4 182034728 182035087 -20293260 + MLT1A1 LTR MaLR 1 354 -11 218 333 40 27 chr4 182035168 182035243 -20293104 + MIR SINE MIR 77 152 -56 1970 114 0 7 chr4 182036937 182037210 -20291137 + AluSq SINE Alu 37 307 -6 252 277 64 35 chr4 182038347 182038488 -20289859 - L2 LINE L2 -207 3065 2921 194 298 53 64 chr4 182038612 182038706 -20289641 - L2 LINE L2 -536 2778 2686 206 228 11 54 chr4 182040484 182040576 -20287771 + A-rich Low_complexity Low_complexity 2 89 0 315 237 0 21 chr4 182041565 182041658 -20286689 + LTR67 LTR ERVL 458 548 -9 225 284 30 30 chr4 182043618 182043685 -20284662 - L2 LINE L2 -13 3300 3234 388 262 125 13 chr4 182043957 182044325 -20284022 + LTR16A LTR ERVL 1 450 0 374 343 139 5 chr4 182044474 182044675 -20283672 - MIR SINE MIR -21 241 14 1716 182 67 17 chr4 182044675 182045032 -20283315 - THE1C LTR MaLR 0 375 1 458 292 87 32 chr4 182045136 182045355 -20282992 - MIR SINE MIR 0 262 32 2051 153 0 0 chr4 182046983 182047291 -20281056 + AluSx SINE Alu 1 308 -4 504 294 25 44 chr4 182047499 182047703 -20280644 - MIR SINE MIR -50 212 13 2317 93 0 13 chr4 182048140 182048453 -20279894 + AluSc SINE Alu 1 309 0 378 266 167 0 chr4 182049079 182049271 -20279076 + L1ME LINE L1 5563 5786 -335 243 203 0 0 chr4 182050139 182050198 -20278149 + CT-rich Low_complexity Low_complexity 2 60 0 29 0 0 0 chr4 182050697 182050726 -20277621 + AT_rich Low_complexity Low_complexity 1 29 0 451 318 54 8 chr4 182050809 182050938 -20277409 - L2 LINE L2 -4 3268 3134 243 307 53 97 chr4 182051101 182051420 -20276927 + L2 LINE L2 2090 2394 -920 225 344 54 0 chr4 182051445 182051538 -20276809 + L2 LINE L2 3008 3105 -208 22 35 0 0 chr4 182051595 182051624 -20276723 + AT_rich Low_complexity Low_complexity 1 29 0 244 233 206 0 chr4 182052635 182052708 -20275639 + L2 LINE L2 3185 3272 0 2818 240 52 50 chr4 182053695 182054538 -20273809 - MER21B LTR ERV1 0 863 19 311 233 41 0 chr4 182054560 182054633 -20273714 - MER21B LTR ERV1 -773 90 15 349 200 120 10 chr4 182054635 182054735 -20273612 - L1MC4 LINE L1 -1339 6703 6593 424 291 137 21 chr4 182055384 182055807 -20272540 - MLT1J2 LTR MaLR -2 448 9 1315 248 101 11 chr4 182056239 182056675 -20271672 - MLT1E LTR MaLR -6 587 113 254 333 167 0 chr4 182057048 182057186 -20271161 + MIR3 SINE MIR 43 203 -5 221 380 39 81 chr4 182057853 182058161 -20270186 + L2 LINE L2 2949 3243 -29 531 334 70 33 chr4 182061464 182061766 -20266581 - L2 LINE L2 -34 3279 2967 748 123 28 0 chr4 182061793 182061899 -20266448 + AluSq/x SINE Alu 1 109 -203 385 269 19 0 chr4 182062281 182062389 -20265958 - MLT1A1 LTR MaLR -255 110 1 2192 121 7 0 chr4 182062861 182063168 -20265179 - AluSx SINE Alu 0 312 4 731 227 81 35 chr4 182064938 182065198 -20263149 + MLT1C LTR MaLR 191 462 -5 2254 131 0 0 chr4 182065747 182066059 -20262288 - AluSx SINE Alu 0 312 1 860 295 67 52 chr4 182067283 182067940 -20260407 + MER115 DNA AcHobo 27 693 0 567 43 0 0 chr4 182068900 182068970 -20259377 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 267 235 24 12 chr4 182069504 182069589 -20258758 + (CATATA)n Simple_repeat Simple_repeat 3 88 0 426 79 0 0 chr4 182069624 182069687 -20258660 + (CA)n Simple_repeat Simple_repeat 1 63 0 461 205 57 49 chr4 182070558 182070680 -20257667 - L2 LINE L2 -1 3312 3190 220 306 18 63 chr4 182072521 182072632 -20255715 + MIR SINE MIR 23 128 -80 209 352 119 26 chr4 182072769 182072962 -20255385 + MIR SINE MIR 46 256 -6 361 308 82 14 chr4 182073851 182073997 -20254350 - MER91A DNA MER1_type -40 156 1 580 258 62 59 chr4 182074234 182074445 -20253902 + MIR SINE MIR 43 256 -6 371 287 75 35 chr4 182074465 182074639 -20253708 + MIR3 SINE MIR 19 199 -9 2245 114 0 0 chr4 182075152 182075441 -20252906 + AluSg SINE Alu 1 289 -21 194 303 135 22 chr4 182075873 182075962 -20252385 + L3 LINE CR1 462 560 -1017 550 275 118 78 chr4 182075987 182076361 -20251986 + L3 LINE CR1 1178 1566 -11 1681 170 31 17 chr4 182076616 182076905 -20251442 - AluJo SINE Alu -19 293 1 2094 136 13 3 chr4 182076913 182077223 -20251124 - AluSq SINE Alu 0 313 1 809 112 0 0 chr4 182078769 182078894 -20249453 - L1MA8 LINE L1 -5 6286 6162 408 353 15 7 chr4 182081217 182081353 -20246994 - MIR SINE MIR -76 186 50 3035 114 20 4 chr4 182082247 182082702 -20245645 + MER1A DNA MER1_type 68 529 0 333 0 0 0 chr4 182083891 182083928 -20244419 + (TG)n Simple_repeat Simple_repeat 2 38 0 2712 102 0 0 chr4 182084158 182084520 -20243827 + THE1B LTR MaLR 3 364 0 10451 89 37 53 chr4 182084520 182085024 -20243323 + THE1B-int LTR MaLR 1 512 -1068 1847 146 0 11 chr4 182085024 182085298 -20243049 + AluSg SINE Alu 37 307 -3 10451 89 37 53 chr4 182085298 182086399 -20241948 + THE1B-int LTR MaLR 512 1580 0 2792 75 0 27 chr4 182086401 182086773 -20241574 + THE1B LTR MaLR 3 364 0 201 188 29 43 chr4 182088251 182088320 -20240027 + (TCTCTG)n Simple_repeat Simple_repeat 4 71 0 188 200 20 0 chr4 182088859 182088909 -20239438 + GA-rich Low_complexity Low_complexity 1 51 0 669 294 63 5 chr4 182088918 182089139 -20239208 + MIR SINE MIR 29 262 0 232 407 125 5 chr4 182089447 182089663 -20238684 - L2 LINE L2 -9 3263 3022 417 211 19 10 chr4 182089699 182089803 -20238544 + MER94 DNA DNA 14 118 -16 201 238 0 0 chr4 182092125 182092167 -20236180 - MIR SINE MIR -218 44 3 260 329 18 18 chr4 182092268 182092432 -20235915 + MLT1K LTR MaLR 20 183 -405 378 0 0 0 chr4 182092624 182092666 -20235681 + (CAT)n Simple_repeat Simple_repeat 3 44 0 541 252 15 7 chr4 182092803 182092938 -20235409 - AluJo SINE Alu -176 136 1 384 40 0 0 chr4 182094167 182094217 -20234130 + (TG)n Simple_repeat Simple_repeat 2 51 0 243 0 0 0 chr4 182094330 182094357 -20233990 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2048 107 3 34 chr4 182094364 182094662 -20233685 - AluSx SINE Alu -22 290 2 356 274 63 48 chr4 182095082 182095334 -20233013 + MARNA DNA Mariner 22 277 -309 308 335 100 16 chr4 182095386 182095637 -20232710 + L2 LINE L2 2479 2750 -564 894 256 28 12 chr4 182095869 182096123 -20232224 - MLT1G LTR MaLR -322 268 11 339 65 0 0 chr4 182098294 182098340 -20230007 + (CA)n Simple_repeat Simple_repeat 1 46 0 3675 226 29 26 chr4 182100944 182102476 -20225871 + L1ME1 LINE L1 1831 3346 -2869 2802 227 29 12 chr4 182102480 182103234 -20225113 + L1ME1 LINE L1 5461 6227 -8 189 224 163 75 chr4 182104453 182104600 -20223747 + MIR SINE MIR 89 248 -14 23 33 0 0 chr4 182104717 182104747 -20223600 + AT_rich Low_complexity Low_complexity 1 30 0 1922 130 0 44 chr4 182105642 182105858 -20222489 - L1MA4 LINE L1 0 6300 6105 2455 147 51 10 chr4 182105858 182106267 -20222080 - MSTB LTR MaLR 0 426 1 1922 130 0 44 chr4 182106267 182106412 -20221935 - L1MA4 LINE L1 -195 6105 5955 12026 221 46 33 chr4 182106528 182107141 -20221206 - L1PA16 LINE L1 -101 7503 6899 2066 127 0 0 chr4 182107141 182107468 -20220879 - AluSx SINE Alu 0 327 1 12026 221 46 33 chr4 182107468 182112155 -20216192 - L1PA16 LINE L1 -705 6899 2231 25 31 0 0 chr4 182112196 182112228 -20216119 + AT_rich Low_complexity Low_complexity 1 32 0 317 329 7 26 chr4 182112980 182113132 -20215215 - L1PA16 LINE L1 -5269 2305 2157 754 380 16 20 chr4 182113324 182113764 -20214583 - L1PA16 LINE L1 -6348 1226 789 3839 194 35 24 chr4 182113775 182114970 -20213377 - L1 LINE L1 -2973 4592 3385 23 0 0 0 chr4 182114987 182115010 -20213337 + AT_rich Low_complexity Low_complexity 1 23 0 3018 269 8 6 chr4 182115010 182115972 -20212375 - L1 LINE L1 -4705 2860 1897 603 341 23 55 chr4 182117010 182117447 -20210900 - L1 LINE L1 -5532 1954 1532 306 0 0 0 chr4 182117895 182117929 -20210418 + (CA)n Simple_repeat Simple_repeat 2 35 0 1841 197 15 43 chr4 182118351 182118813 -20209534 + LTR2 LTR ERV1 1 449 0 3947 105 2 0 chr4 182119194 182119747 -20208600 - MER41A LTR ERV1 0 554 1 346 308 75 0 chr4 182119757 182119864 -20208483 - MIR SINE MIR -36 226 112 256 217 0 0 chr4 182121639 182121685 -20206662 - MIR SINE MIR -6 256 211 309 333 51 8 chr4 182122424 182122541 -20205806 - L2 LINE L2 -4 3268 3147 924 147 6 0 chr4 182123438 182123595 -20204752 - L1PA16 LINE L1 -5 6161 6004 216 0 0 0 chr4 182125416 182125440 -20202907 + (A)n Simple_repeat Simple_repeat 1 24 0 784 324 144 43 chr4 182125840 182126025 -20202322 + L1MC4a LINE L1 3254 3419 -2727 1968 199 81 96 chr4 182126025 182126689 -20201658 - MLT1E1 LTR MaLR 0 654 1 784 324 144 43 chr4 182126689 182127169 -20201178 + L1MC4a LINE L1 3419 3849 -2297 4017 193 17 1 chr4 182127169 182127891 -20200456 - MER44D DNA MER2_type 0 605 1 784 324 144 43 chr4 182127891 182128209 -20200138 + L1MC4a LINE L1 3849 4134 -2012 273 29 0 0 chr4 182128209 182128243 -20200104 + (TG)n Simple_repeat Simple_repeat 2 35 0 784 324 144 43 chr4 182128243 182128579 -20199768 + L1MC4a LINE L1 4134 4708 -1438 751 294 68 35 chr4 182129080 182129628 -20198719 + L1MC4a LINE L1 5324 5889 -1919 27 49 0 0 chr4 182129673 182129714 -20198633 + AT_rich Low_complexity Low_complexity 1 41 0 188 310 76 62 chr4 182129783 182129928 -20198419 - L2 LINE L2 -2 3311 3165 37941 75 5 6 chr4 182131857 182138005 -20190342 + L1PA5 LINE L1 11 6154 0 410 268 105 13 chr4 182138288 182138441 -20189906 - MIR SINE MIR -5 257 91 336 228 43 43 chr4 182140426 182140518 -20187829 - L2 LINE L2 0 3313 3222 634 314 5 5 chr4 182140602 182140806 -20187541 - L2 LINE L2 -287 3026 2823 2104 139 7 0 chr4 182141117 182141426 -20186921 + AluSx SINE Alu 1 311 -1 2920 62 0 0 chr4 182141544 182141898 -20186449 + THE1A LTR MaLR 2 355 0 419 305 133 8 chr4 182142316 182142444 -20185903 - L2 LINE L2 0 3272 3129 2825 158 12 27 chr4 182142502 182142740 -20185607 + LTR60 LTR ERV1 1 241 -345 2366 125 11 6 chr4 182142740 182143100 -20185247 - THE1B LTR MaLR -2 362 1 2825 158 12 27 chr4 182143100 182143249 -20185098 + LTR60 LTR ERV1 241 391 -195 2088 112 63 20 chr4 182143249 182143598 -20184749 - THE1B LTR MaLR 0 364 1 2825 158 12 27 chr4 182143598 182143804 -20184543 + LTR60 LTR ERV1 391 586 0 241 320 57 16 chr4 182143950 182144072 -20184275 + L2 LINE L2 3186 3312 -1 201 191 24 0 chr4 182144173 182144215 -20184132 + GA-rich Low_complexity Low_complexity 5 47 0 348 333 117 24 chr4 182144216 182144465 -20183882 - L2 LINE L2 -337 2977 2706 2439 71 3 3 chr4 182144465 182144775 -20183572 - AluY SINE Alu -1 310 1 1415 227 60 23 chr4 182145046 182145487 -20182860 + MLT1E2 LTR MaLR 56 602 -24 1625 197 8 40 chr4 182145598 182145974 -20182373 - MLT1A1 LTR MaLR -1 364 1 503 267 16 2 chr4 182146752 182146888 -20181459 - MLT1J1 LTR MaLR -244 165 31 834 288 107 22 chr4 182147005 182147570 -20180777 - MLT1G LTR MaLR -1 589 1 445 188 0 0 chr4 182147705 182147790 -20180557 + MER58B DNA MER1_type 248 332 -9 522 342 30 10 chr4 182147806 182148005 -20180342 + MIR SINE MIR 11 213 -49 494 324 139 8 chr4 182148134 182148372 -20179975 - L3 LINE CR1 -156 1421 1153 237 377 90 0 chr4 182148604 182148726 -20179621 - L3 LINE CR1 -800 777 645 1840 163 107 8 chr4 182148967 182149342 -20179005 - MLT2D LTR ERVL 0 414 3 2271 108 0 3 chr4 182149554 182149850 -20178497 + AluSq SINE Alu 1 295 -18 21 71 0 0 chr4 182150009 182150051 -20178296 + AT_rich Low_complexity Low_complexity 1 42 0 1701 163 61 0 chr4 182150247 182150524 -20177823 - AluJo SINE Alu -18 294 1 374 319 72 12 chr4 182151014 182151180 -20177167 - MIR SINE MIR -45 217 42 354 322 87 0 chr4 182151753 182151868 -20176479 + L2 LINE L2 3189 3313 0 1978 133 71 3 chr4 182152119 182152457 -20175890 - MER46B DNA MER2_type 0 236 1 9337 83 16 1 chr4 182154896 182156297 -20172050 + L1P LINE L1 3043 4463 -1683 194 250 29 29 chr4 182156460 182156528 -20171819 - MIR SINE MIR -187 75 8 23 33 0 0 chr4 182156847 182156877 -20171470 + AT_rich Low_complexity Low_complexity 1 30 0 278 246 31 15 chr4 182157160 182157225 -20171122 - L2 LINE L2 -27 3245 3180 201 39 0 0 chr4 182157850 182157876 -20170471 + (GGA)n Simple_repeat Simple_repeat 1 26 0 1435 201 50 23 chr4 182158581 182158880 -20169467 + AluJb SINE Alu 1 307 -5 280 128 0 0 chr4 182159105 182159144 -20169203 - L2 LINE L2 -10 3303 3265 2285 101 0 3 chr4 182159924 182160220 -20168127 - AluSc SINE Alu -14 295 1 207 0 0 0 chr4 182160226 182160249 -20168098 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1764 166 3 11 chr4 182160251 182160535 -20167812 - AluJo SINE Alu -30 282 1 1498 203 21 45 chr4 182162671 182163089 -20165258 + MLT1F LTR MaLR 135 542 0 505 213 74 8 chr4 182163182 182163378 -20164969 + L1 LINE L1 5152 5360 -830 * 3419 215 39 29 chr4 182163366 182164333 -20164014 + L1ME1 LINE L1 4804 5793 -373 2338 99 3 10 chr4 182164333 182164645 -20163702 + AluSq SINE Alu 1 310 -3 3419 215 39 29 chr4 182164645 182165018 -20163329 + L1ME1 LINE L1 5793 6161 -5 243 0 0 0 chr4 182165684 182165711 -20162636 + (TG)n Simple_repeat Simple_repeat 1 27 0 2045 96 6 60 chr4 182168015 182168329 -20160018 - AluSq SINE Alu -16 297 1 2185 126 0 0 chr4 182169187 182169533 -20158814 + AluY SINE Alu 1 346 0 572 269 39 62 chr4 182170698 182170955 -20157392 - MIR SINE MIR 0 262 12 2252 135 0 0 chr4 182172063 182172375 -20155972 - AluSx SINE Alu 0 312 1 1663 199 0 3 chr4 182174029 182174326 -20154021 - AluJo SINE Alu -15 297 2 2165 81 95 0 chr4 182174755 182175040 -20153307 + AluSx SINE Alu 1 312 0 237 133 0 0 chr4 182175143 182175188 -20153159 - L1MC3 LINE L1 0 7785 7741 2509 89 119 10 chr4 182175219 182175623 -20152724 - LTR7 LTR ERV1 -2 448 1 2456 96 48 13 chr4 182175623 182176000 -20152347 - HERVH LTR ERV1 0 7713 7324 1167 128 128 0 chr4 182176000 182176195 -20152152 - HERVH LTR ERV1 -1894 5819 5600 20914 151 60 57 chr4 182176196 182181517 -20146830 - HERVH LTR ERV1 -2564 5149 1 2710 82 94 10 chr4 182181519 182181932 -20146415 - LTR7 LTR ERV1 -2 448 1 778 136 15 8 chr4 182181942 182182074 -20146273 - L1MD3 LINE L1 -117 7878 7746 1320 258 32 55 chr4 182182479 182183196 -20145151 + L2 LINE L2 2603 3312 -1 21 36 0 0 chr4 182184094 182184122 -20144225 + AT_rich Low_complexity Low_complexity 1 28 0 2320 84 14 0 chr4 182184926 182185223 -20143124 + AluY SINE Alu 3 303 -8 25 31 0 0 chr4 182185230 182185262 -20143085 + AT_rich Low_complexity Low_complexity 1 32 0 239 186 0 0 chr4 182185651 182185694 -20142653 + tRNA-Phe-TTC tRNA tRNA 1 43 -33 2324 89 10 0 chr4 182186019 182186311 -20142036 - AluSx SINE Alu -17 295 1 1337 180 41 55 chr4 182187153 182187497 -20140850 + MER44D DNA MER2_type 1 609 0 386 279 112 31 chr4 182189173 182189334 -20139013 + HAL1b LINE L1 433 539 -809 1912 167 89 24 chr4 182189335 182189477 -20138870 + MSTD LTR MaLR 1 132 -264 5105 145 95 60 chr4 182189477 182190701 -20137646 - MER11A LTR ERVK 0 1266 1 1912 167 89 24 chr4 182190701 182190930 -20137417 + MSTD LTR MaLR 132 396 0 537 308 119 18 chr4 182191482 182191976 -20136371 + L1M4 LINE L1 2159 2702 -3444 1082 226 43 123 chr4 182192114 182192772 -20135575 + L1MC4 LINE L1 6613 7217 -744 226 315 0 0 chr4 182193367 182193440 -20134907 + CT-rich Low_complexity Low_complexity 2 74 0 180 111 0 0 chr4 182193932 182193959 -20134388 + (TC)n Simple_repeat Simple_repeat 1 27 0 7385 185 127 19 chr4 182194183 182195767 -20132580 - MER52A LTR ERV1 0 1755 1 29 28 0 0 chr4 182195950 182195986 -20132361 + AT_rich Low_complexity Low_complexity 1 36 0 3799 107 23 12 chr4 182197082 182197463 -20130884 - LTR43 LTR ERV1 -1 601 211 1881 128 7 7 chr4 182197463 182197745 -20130602 - AluSx SINE Alu -15 297 16 3799 107 23 12 chr4 182197745 182197934 -20130413 - LTR43 LTR ERV1 -391 211 25 405 266 92 43 chr4 182198493 182198677 -20129670 + MIR SINE MIR 52 244 -18 544 240 0 0 chr4 182248917 182249042 -20079305 - L1M4 LINE L1 -5333 1209 1085 1316 225 37 44 chr4 182249067 182249415 -20078932 - L1M4 LINE L1 -6121 421 75 222 37 0 0 chr4 182249415 182249442 -20078905 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1316 225 37 44 chr4 182249442 182249502 -20078845 - L1M4 LINE L1 -6467 75 16 1065 290 92 15 chr4 182249867 182250019 -20078328 - MLT1E LTR MaLR -173 420 281 2242 135 3 0 chr4 182250019 182250330 -20078017 - AluSp SINE Alu -1 312 1 1065 290 92 15 chr4 182250330 182250567 -20077780 - MLT1E LTR MaLR -312 281 1 1106 237 53 0 chr4 182250605 182250850 -20077497 - MIR SINE MIR -3 259 2 1734 159 37 67 chr4 182251964 182252366 -20075981 + MLT1B LTR MaLR 1 390 0 5989 74 3 9 chr4 182253265 182254175 -20074172 - Harlequin LTR ERV1 -4186 2710 1806 * 8274 56 12 27 chr4 182254157 182255334 -20073013 - Harlequin LTR ERV1 -5475 1421 263 2348 103 13 40 chr4 182255329 182255725 -20072622 - Harlequin LTR ERV1 -6511 385 1 * 1625 202 88 26 chr4 182255725 182256155 -20072192 - LTR2B LTR ERV1 0 490 34 288 138 17 0 chr4 182256510 182256568 -20071779 - MLT1F1 LTR MaLR -2 565 507 1268 222 51 32 chr4 182256568 182256938 -20071409 - MSTD LTR MaLR -19 377 1 32008 57 7 7 chr4 182257098 182261294 -20067053 + Harlequin LTR ERV1 2699 6896 0 1558 202 14 21 chr4 182261294 182261751 -20066596 + LTR2B LTR ERV1 1 490 0 187 302 32 0 chr4 182261751 182261814 -20066533 - MIR SINE MIR -121 141 77 724 181 150 12 chr4 182263510 182263670 -20064677 + MER5A DNA MER1_type 2 183 -6 1089 209 44 34 chr4 182264672 182264968 -20063379 - MLT1A2 LTR MaLR -73 301 3 600 331 26 34 chr4 182265106 182265456 -20062891 + L1 LINE L1 2237 2583 -3563 213 39 0 0 chr4 182265777 182265803 -20062544 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2136 110 23 3 chr4 182265803 182266103 -20062244 + AluSx SINE Alu 1 306 -6 23 33 0 0 chr4 182266554 182266584 -20061763 + AT_rich Low_complexity Low_complexity 1 30 0 359 280 10 67 chr4 182267047 182267240 -20061107 + L1ME4a LINE L1 5783 5964 -157 22 56 0 0 chr4 182267647 182267683 -20060664 + AT_rich Low_complexity Low_complexity 1 36 0 234 318 40 8 chr4 182267693 182267819 -20060528 + L1 LINE L1 4881 5010 -1136 466 219 195 35 chr4 182268234 182268380 -20059967 - AluJo SINE Alu -20 292 114 206 81 27 0 chr4 182268380 182268417 -20059930 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 466 219 195 35 chr4 182268417 182268439 -20059908 - AluJo SINE Alu -198 114 97 401 156 0 0 chr4 182268453 182268517 -20059830 - AluSp/q SINE Alu -36 267 204 21026 163 28 18 chr4 182268517 182270301 -20058046 + L1PA13 LINE L1 1030 2795 -4806 1915 142 53 0 chr4 182270301 182270582 -20057765 + AluSx SINE Alu 1 296 -16 21026 163 28 18 chr4 182270582 182272954 -20055393 + L1PA13 LINE L1 2795 5142 -2459 2729 93 3 11 chr4 182272954 182273321 -20055026 + THE1B LTR MaLR 1 364 0 21026 163 28 18 chr4 182273321 182274861 -20053486 + L1PA13 LINE L1 5142 7599 -2 1011 146 131 16 chr4 182274931 182275202 -20053145 + MSTA LTR MaLR 91 428 0 201 244 44 0 chr4 182275640 182275685 -20052662 + MIR SINE MIR 72 118 -90 186 239 22 0 chr4 182276124 182276170 -20052177 + L2 LINE L2 3262 3308 -5 420 71 0 0 chr4 182276364 182276420 -20051927 + (TAA)n Simple_repeat Simple_repeat 2 57 0 354 300 212 12 chr4 182277571 182277741 -20050606 + L2 LINE L2 2890 3093 -179 530 105 0 0 chr4 182278067 182278143 -20050204 - AluS SINE Alu -236 76 1 316 256 59 26 chr4 182278235 182278484 -20049863 - LTR33 LTR ERVL 0 521 235 184 179 0 26 chr4 182278524 182278563 -20049784 + L2 LINE L2 3269 3306 -7 24 0 0 0 chr4 182279187 182279211 -20049136 + AT_rich Low_complexity Low_complexity 1 24 0 2712 191 8 48 chr4 182279527 182279652 -20048695 - L1MB8 LINE L1 0 6178 6049 2093 139 0 3 chr4 182279652 182279961 -20048386 - AluSx SINE Alu -4 308 1 2712 191 8 48 chr4 182279961 182280499 -20047848 - L1MB8 LINE L1 -129 6049 5542 204 332 53 91 chr4 182281092 182281279 -20047068 - L2 LINE L2 -221 3051 2872 2041 142 0 43 chr4 182281357 182281680 -20046667 + AluSx SINE Alu 1 309 -3 1658 171 0 0 chr4 182281849 182282094 -20046253 + AluSx SINE Alu 1 245 -67 243 0 0 0 chr4 182282190 182282217 -20046130 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 232 344 7 65 chr4 182282223 182282272 -20046075 - L2 LINE L2 -683 2631 2581 751 204 122 5 chr4 182282272 182282468 -20045879 + MER20 DNA MER1_type 1 219 0 232 344 7 65 chr4 182282468 182282572 -20045775 - L2 LINE L2 -733 2581 2487 1056 167 57 142 chr4 182282637 182282954 -20045393 - AluJb SINE Alu -12 290 1 244 282 69 69 chr4 182283031 182283205 -20045142 + MLT1K LTR MaLR 56 229 -359 587 279 4 54 chr4 182283227 182283467 -20044880 + MLT1K LTR MaLR 358 585 -3 27 0 0 0 chr4 182283669 182283696 -20044651 + AT_rich Low_complexity Low_complexity 1 27 0 899 257 115 41 chr4 182283874 182284361 -20043986 + LTR33A LTR ERVL 1 523 0 2222 108 0 3 chr4 182286523 182286829 -20041518 + AluSx SINE Alu 1 305 -7 373 176 146 103 chr4 182290552 182290717 -20037630 - MIR SINE MIR 0 262 91 216 67 0 0 chr4 182290896 182290926 -20037421 + (TC)n Simple_repeat Simple_repeat 1 30 0 1808 160 7 4 chr4 182290928 182291209 -20037138 - AluJo SINE Alu -30 282 1 429 297 179 29 chr4 182292105 182292378 -20035969 - L3 LINE CR1 -60 1517 1204 326 364 65 16 chr4 182292374 182292558 -20035789 + MIR SINE MIR 20 212 -50 * 446 324 56 42 chr4 182292996 182293212 -20035135 - L3 LINE CR1 -450 1127 909 225 309 55 55 chr4 182293223 182293333 -20035014 - L2 LINE L2 0 3313 3204 2222 88 0 3 chr4 182293510 182293818 -20034529 + AluSq SINE Alu 1 307 0 587 287 30 21 chr4 182294119 182294444 -20033903 - MLT1I LTR MaLR -9 400 40 319 234 86 78 chr4 182295885 182296141 -20032206 + Charlie7 DNA MER1_type 2211 2468 -144 311 243 74 7 chr4 182296942 182297105 -20031242 - L1ME3A LINE L1 -286 5884 5710 1928 130 4 0 chr4 182297162 182297438 -20030909 + 7SLRNA srpRNA srpRNA 8 284 -36 2443 99 17 3 chr4 182297438 182297800 -20030547 + THE1C LTR MaLR 9 375 0 1930 146 0 0 chr4 182297838 182298106 -20030241 + AluSx SINE Alu 39 306 -6 496 288 79 19 chr4 182298109 182298327 -20030020 - L1ME3A LINE L1 -466 5704 5501 2276 100 0 0 chr4 182298327 182298617 -20029730 + AluSx SINE Alu 1 290 -22 496 288 79 19 chr4 182298617 182298895 -20029452 - L1ME3A LINE L1 -669 5501 5174 1551 184 4 0 chr4 182300225 182300475 -20027872 - AluJb SINE Alu -27 285 35 1321 189 91 104 chr4 182300648 182301197 -20027150 - MLT1F LTR MaLR 0 542 1 2074 106 10 3 chr4 182301354 182301668 -20026679 - AluSx SINE Alu 0 312 3 1306 157 17 168 chr4 182301670 182301836 -20026511 - AluJb SINE Alu -14 298 211 1868 109 71 0 chr4 182301836 182302103 -20026244 - AluSg SINE Alu -24 286 1 1306 157 17 168 chr4 182302103 182302287 -20026060 - AluJb SINE Alu -101 211 1 313 107 0 0 chr4 182302456 182302512 -20025835 - Alu SINE Alu -1 300 245 1625 65 15 0 chr4 182302612 182302813 -20025534 - AluSx SINE Alu -108 204 1 512 303 121 26 chr4 182303329 182303499 -20024848 - MLT1J2 LTR MaLR -58 392 239 2130 112 27 0 chr4 182303499 182303793 -20024554 + AluSx SINE Alu 1 302 -10 512 303 121 26 chr4 182303793 182303962 -20024385 - MLT1J2 LTR MaLR -211 239 21 326 23 0 23 chr4 182305088 182305132 -20023215 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 2484 80 0 3 chr4 182305958 182306272 -20022075 + AluSq SINE Alu 1 313 0 208 318 171 11 chr4 182306413 182306501 -20021846 + L2 LINE L2 3146 3247 -25 180 257 0 143 chr4 182306818 182306888 -20021459 + L2 LINE L2 3209 3268 -4 267 351 131 74 chr4 182307138 182307488 -20020859 + L2 LINE L2 2848 3217 -55 191 330 179 9 chr4 182307557 182307669 -20020678 + MIR3 SINE MIR 15 145 -63 245 255 13 27 chr4 182309476 182309625 -20018722 + (CATATA)n Simple_repeat Simple_repeat 2 148 0 2199 117 3 0 chr4 182309805 182310103 -20018244 + AluSx SINE Alu 1 299 -13 197 266 0 76 chr4 182310558 182310637 -20017710 - L2 LINE L2 -4 3309 3237 475 254 145 66 chr4 182310979 182311061 -20017286 + MLT1J2 LTR MaLR 103 177 -273 2057 102 3 3 chr4 182311061 182311395 -20016952 + AluSx SINE Alu 1 334 0 475 254 145 66 chr4 182311395 182311614 -20016733 + MLT1J2 LTR MaLR 177 429 -21 183 374 191 17 chr4 182312044 182312692 -20015655 - L2 LINE L2 -558 2756 1996 34 0 0 0 chr4 182312725 182312759 -20015588 + AT_rich Low_complexity Low_complexity 1 34 0 389 293 69 60 chr4 182312771 182313089 -20015258 - L1MEd LINE L1 -5238 881 561 967 101 13 6 chr4 182313089 182313248 -20015099 + L1MA3 LINE L1 6113 6272 -33 225 133 0 50 chr4 182313254 182313314 -20015033 + (TA)n Simple_repeat Simple_repeat 2 58 0 264 59 0 0 chr4 182313323 182313357 -20014990 + (CA)n Simple_repeat Simple_repeat 2 35 0 1942 158 3 7 chr4 182313401 182313705 -20014642 + AluJb SINE Alu 1 303 -9 1316 109 5 26 chr4 182314147 182314340 -20014007 - AluSg1 SINE Alu -20 292 104 734 85 0 0 chr4 182314440 182314534 -20013813 - AluSg1 SINE Alu -215 94 1 2343 99 3 3 chr4 182314667 182314971 -20013376 + AluSg SINE Alu 1 304 -6 821 246 124 104 chr4 182315173 182315911 -20012436 + L2 LINE L2 2528 3305 -8 226 333 43 78 chr4 182316271 182316412 -20011935 + MIR3 SINE MIR 2 137 -71 459 360 65 65 chr4 182317634 182317727 -20010620 - L2 LINE L2 -22 3250 3158 2144 87 7 0 chr4 182317727 182318049 -20010298 + AluSc SINE Alu 1 324 0 459 360 65 65 chr4 182318049 182318486 -20009861 - L2 LINE L2 -114 3158 2717 405 195 0 37 chr4 182318840 182318922 -20009425 - MIR3 SINE MIR -2 206 128 1380 226 73 18 chr4 182318941 182319326 -20009021 + MLT1F1 LTR MaLR 159 564 -3 234 349 96 84 chr4 182319916 182320332 -20008015 - L2 LINE L2 -3 3269 2849 222 312 37 18 chr4 182320875 182320984 -20007363 - MIR SINE MIR -58 204 94 2225 29 29 7 chr4 182321098 182321378 -20006969 - L1PA13 LINE L1 -3 6160 5875 1828 146 3 36 chr4 182321851 182322159 -20006188 + AluJo SINE Alu 11 308 -4 333 265 51 0 chr4 182322276 182322374 -20005973 + MER5A DNA MER1_type 1 103 -86 199 277 117 44 chr4 182322388 182322525 -20005822 - L3 LINE CR1 -597 980 834 434 286 88 36 chr4 182322624 182322816 -20005531 - L3 LINE CR1 -1027 550 349 1974 107 16 50 chr4 182322959 182323277 -20005070 + AluSx SINE Alu 6 312 0 949 250 16 51 chr4 182323723 182324069 -20004278 + AluSq SINE Alu 3 337 0 223 279 4 62 chr4 182325040 182325240 -20003107 + G-rich Low_complexity Low_complexity 1 188 0 200 219 37 37 chr4 182325565 182325647 -20002700 + C-rich Low_complexity Low_complexity 6 87 0 24 32 0 0 chr4 182325929 182325960 -20002387 + GC_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr4 182326282 182326307 -20002040 + GC_rich Low_complexity Low_complexity 1 25 0 221 297 62 0 chr4 182328160 182328224 -20000123 - L2 LINE L2 0 3272 3205 21 0 0 0 chr4 182328283 182328304 -20000043 + AT_rich Low_complexity Low_complexity 1 21 0 4326 131 26 3 chr4 182328389 182329082 -19999265 - MER50 LTR ERV1 -24 710 2 557 296 147 43 chr4 182329138 182329581 -19998766 - L2 LINE L2 -345 2969 2481 1043 135 14 82 chr4 182329898 182330105 -19998242 - MER1B DNA MER1_type 0 339 147 600 320 52 4 chr4 182331683 182331914 -19996433 - MIR SINE MIR 0 262 21 327 151 19 0 chr4 182332026 182332079 -19996268 + Tigger5 DNA MER2_type 2 55 -2268 309 194 28 14 chr4 182332049 182332121 -19996226 + Tigger5 DNA MER2_type 2251 2323 0 * 317 159 29 43 chr4 182332133 182332202 -19996145 + Tigger5 DNA MER2_type 2256 2323 0 2230 114 0 7 chr4 182332233 182332539 -19995808 + AluSx SINE Alu 6 309 -3 505 296 100 21 chr4 182332562 182332810 -19995537 - L2 LINE L2 -259 3054 2787 349 191 119 24 chr4 182332834 182332918 -19995429 - MER94 DNA DNA -34 100 9 922 211 17 0 chr4 182333524 182333704 -19994643 - MER5A DNA MER1_type 0 189 7 414 0 0 0 chr4 182334445 182334491 -19993856 + (TG)n Simple_repeat Simple_repeat 1 46 0 21 0 0 0 chr4 182335367 182335388 -19992959 + AT_rich Low_complexity Low_complexity 1 21 0 625 215 91 0 chr4 182335798 182335919 -19992428 + FLAM_C SINE Alu 1 132 -11 22 56 0 0 chr4 182336371 182336407 -19991940 + AT_rich Low_complexity Low_complexity 1 36 0 2335 110 0 0 chr4 182336764 182337065 -19991282 - AluSq SINE Alu -12 301 1 21 0 0 0 chr4 182337649 182337670 -19990677 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr4 182339099 182339134 -19989213 + (CA)n Simple_repeat Simple_repeat 2 36 0 264 30 0 0 chr4 182339176 182339209 -19989138 + (CA)n Simple_repeat Simple_repeat 2 34 0 243 0 0 0 chr4 182339255 182339282 -19989065 + (CA)n Simple_repeat Simple_repeat 2 28 0 198 0 0 0 chr4 182339363 182339385 -19988962 + (CA)n Simple_repeat Simple_repeat 2 23 0 477 34 0 0 chr4 182339470 182339529 -19988818 + (CA)n Simple_repeat Simple_repeat 1 59 0 6789 67 7 108 chr4 182339929 182341091 -19987256 - SVA Other Other -340 1046 2 283 262 117 48 chr4 182342759 182342904 -19985443 + MIR SINE MIR 25 179 -83 1886 102 69 11 chr4 182343218 182343493 -19984854 - AluSc SINE Alu -18 291 1 291 245 88 34 chr4 182343525 182343672 -19984675 - L1ME4a LINE L1 -16 6105 5951 413 235 57 32 chr4 182344612 182344739 -19983608 - MIR SINE MIR -51 157 29 183 359 83 44 chr4 182345168 182345349 -19982998 + L2 LINE L2 2992 3179 -93 227 191 0 0 chr4 182346506 182346548 -19981799 - MLT1J LTR MaLR -143 368 327 400 250 122 26 chr4 182346588 182346744 -19981603 - MLT1J LTR MaLR -143 368 198 400 154 55 109 chr4 182346748 182346858 -19981489 - MLT1J LTR MaLR -407 104 1 627 196 50 78 chr4 182347486 182347705 -19980642 - LTR50 LTR ERVL -109 686 474 610 222 162 11 chr4 182347791 182347976 -19980371 - LTR50 LTR ERVL -582 213 1 21 36 0 0 chr4 182349982 182350010 -19978337 + AT_rich Low_complexity Low_complexity 1 28 0 1663 47 0 0 chr4 182351080 182351273 -19977074 - L1PA5 LINE L1 -3 6151 5959 2410 91 0 0 chr4 182352565 182352862 -19975485 - AluSx SINE Alu -15 297 1 1990 87 60 0 chr4 182352977 182353242 -19975105 - L1PA11 LINE L1 -1 6173 5893 180 0 0 0 chr4 182353501 182353521 -19974826 + (T)n Simple_repeat Simple_repeat 1 20 0 316 291 33 113 chr4 182354215 182354428 -19973919 + MIR SINE MIR 11 206 -56 2462 59 0 29 chr4 182354499 182354805 -19973542 - AluY SINE Alu -14 297 1 406 200 248 0 chr4 182354966 182355091 -19973256 - MER103 DNA DNA 0 166 11 527 293 6 19 chr4 182355292 182355449 -19972898 - L2 LINE L2 -216 3097 2943 452 219 251 0 chr4 182355705 182355875 -19972472 + MIR SINE MIR 8 232 -30 27 29 0 0 chr4 182357738 182357772 -19970575 + AT_rich Low_complexity Low_complexity 1 34 0 182 328 0 17 chr4 182357772 182357830 -19970517 - MIR SINE MIR -161 101 45 180 378 18 18 chr4 182358931 182359042 -19969305 + L2 LINE L2 2942 3052 -220 4419 225 151 37 chr4 182359228 182359541 -19968806 - L1 LINE L1 -3622 3484 3208 2300 73 14 0 chr4 182359541 182359828 -19968519 - AluY SINE Alu -20 291 1 4419 225 151 37 chr4 182359828 182362895 -19965452 - L1 LINE L1 -3898 3208 11 383 314 44 7 chr4 182362912 182363049 -19965298 - MIR SINE MIR -112 150 9 336 136 136 121 chr4 182363700 182363840 -19964507 - HAL1b LINE L1 -14 1334 1193 250 306 90 9 chr4 182363963 182364074 -19964273 - L1ME LINE L1 -344 5777 5658 350 294 144 32 chr4 182364168 182364515 -19963832 - L1ME LINE L1 -2151 5657 5272 21 57 0 0 chr4 182364591 182364626 -19963721 + AT_rich Low_complexity Low_complexity 1 35 0 2294 98 0 3 chr4 182366290 182366596 -19961751 + AluSg SINE Alu 1 305 -5 1537 156 78 0 chr4 182366886 182367169 -19961178 - AluJb SINE Alu -7 305 1 23 33 0 0 chr4 182367227 182367257 -19961090 + AT_rich Low_complexity Low_complexity 1 30 0 1188 177 83 18 chr4 182367291 182367568 -19960779 - MER33 DNA MER1_type 0 324 30 268 245 54 98 chr4 182367634 182367818 -19960529 + MER5A DNA MER1_type 2 188 -1 314 280 63 56 chr4 182368911 182369054 -19959293 - MIR3 SINE MIR -28 180 37 252 346 68 8 chr4 182371474 182371607 -19956740 + L2 LINE L2 3173 3313 0 2089 127 3 3 chr4 182371661 182371968 -19956379 - AluSx SINE Alu -5 307 1 943 178 37 0 chr4 182372285 182372448 -19955899 + AluJb SINE Alu 121 289 -23 312 298 10 58 chr4 182372727 182372831 -19955516 + MIR SINE MIR 42 140 -122 198 0 0 0 chr4 182373030 182373052 -19955295 + (TA)n Simple_repeat Simple_repeat 2 23 0 2439 86 0 0 chr4 182373052 182373354 -19954993 - AluSq SINE Alu -11 302 1 262 270 52 87 chr4 182375141 182375256 -19953091 - L2 LINE L2 -5 3267 3157 6212 134 13 19 chr4 182375307 182376815 -19951532 - L1PB1 LINE L1 -1 6150 4653 6584 24 0 0 chr4 182376831 182377625 -19950722 - L1PA3 LINE L1 -7 6148 5355 269 283 66 9 chr4 182377632 182377738 -19950609 - L2 LINE L2 -43 3270 3159 352 261 165 23 chr4 182378269 182378445 -19949902 - MER5C DNA MER1_type -102 222 22 1528 140 4 0 chr4 182378594 182378822 -19949525 - AluSg/x SINE Alu -10 302 74 250 273 0 71 chr4 182378948 182379047 -19949300 - MIR SINE MIR -50 212 121 401 279 180 12 chr4 182380175 182380519 -19947828 - L1MC4 LINE L1 -547 7495 7094 894 261 66 0 chr4 182380617 182380889 -19947458 - L1MC4a LINE L1 -967 6841 6552 21 0 0 0 chr4 182380889 182380910 -19947437 + AT_rich Low_complexity Low_complexity 1 21 0 236 203 13 89 chr4 182381025 182381054 -19947293 + MER5A DNA MER1_type 47 77 -112 2437 38 0 10 chr4 182381054 182381385 -19946962 + AluY SINE Alu 1 328 0 236 203 13 89 chr4 182381385 182381433 -19946914 + MER5A DNA MER1_type 77 119 -70 464 256 51 7 chr4 182381844 182381981 -19946366 - MIR SINE MIR 0 262 120 812 270 28 68 chr4 182382046 182382398 -19945949 - LTR16A LTR ERVL -5 445 108 33 0 0 0 chr4 182383504 182383537 -19944810 + AT_rich Low_complexity Low_complexity 1 33 0 2367 93 0 0 chr4 182383643 182383954 -19944393 - AluY SINE Alu 0 311 1 310 309 67 32 chr4 182384678 182385024 -19943323 - L1ME4a LINE L1 -213 5908 5551 803 301 26 0 chr4 182385842 182386071 -19942276 + MIR SINE MIR 8 242 -20 440 288 79 33 chr4 182387758 182387973 -19940374 + MIR SINE MIR 4 228 -34 5254 124 22 10 chr4 182388644 182388760 -19939587 - L1MA4 LINE L1 -5 6295 6182 1751 154 0 11 chr4 182388760 182389045 -19939302 - AluJo SINE Alu -16 296 15 5254 124 22 10 chr4 182389045 182389837 -19938510 - L1MA4 LINE L1 -118 6182 5376 1554 304 132 49 chr4 182389953 182390941 -19937406 + L2 LINE L2 1465 2370 -902 2372 144 43 5 chr4 182390941 182391123 -19937224 + MSTB1 LTR MaLR 1 175 -257 204 67 0 0 chr4 182391123 182391153 -19937194 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2372 144 43 5 chr4 182391153 182391386 -19936961 + MSTB1 LTR MaLR 175 432 0 1554 304 132 49 chr4 182391386 182391867 -19936480 + L2 LINE L2 2370 2810 -462 2389 97 3 0 chr4 182391867 182392177 -19936170 - AluY SINE Alu 0 311 1 1554 304 132 49 chr4 182392177 182392372 -19935975 + L2 LINE L2 2810 3263 -9 233 276 143 19 chr4 182393084 182393189 -19935158 + L2 LINE L2 3182 3299 -14 21 0 0 0 chr4 182395018 182395039 -19933308 + AT_rich Low_complexity Low_complexity 1 21 0 331 305 137 23 chr4 182395677 182395808 -19932539 - L2 LINE L2 0 3272 3127 2436 97 3 0 chr4 182396682 182396992 -19931355 - AluSp SINE Alu -2 311 1 826 140 0 29 chr4 182397412 182397548 -19930799 + FLAM_C SINE Alu 2 133 0 456 160 0 0 chr4 182397963 182398038 -19930309 - AluJ/FRAM SINE Alu -21 291 217 466 260 81 24 chr4 182400259 182400382 -19927965 - L2 LINE L2 0 3272 3143 986 222 0 0 chr4 182400387 182400585 -19927762 + MER58A DNA MER1_type 26 223 -1 207 316 85 57 chr4 182400635 182400812 -19927535 - L2 LINE L2 -508 2806 2625 * 661 260 143 25 chr4 182400797 182400993 -19927354 + MIR SINE MIR 10 228 -34 776 343 41 29 chr4 182401008 182401521 -19926826 - L2 LINE L2 -691 2623 2105 694 221 72 23 chr4 182402443 182402706 -19925641 + LTR37A LTR ERV1 95 413 -55 629 225 92 0 chr4 182403312 182403454 -19924893 + MER5B DNA MER1_type 1 155 -23 346 253 0 38 chr4 182404983 182405062 -19923285 + MER5C DNA MER1_type 1 76 -248 849 114 69 29 chr4 182405935 182406110 -19922237 + MER53 DNA DNA 4 185 -4 243 339 111 18 chr4 182406348 182406519 -19921828 - MIR SINE MIR -63 199 13 844 282 141 52 chr4 182406726 182407500 -19920847 + L2 LINE L2 2439 3312 -1 379 301 48 7 chr4 182407516 182407662 -19920685 + MIR SINE MIR 46 197 -65 1818 168 0 7 chr4 182409241 182409538 -19918809 + AluJb SINE Alu 2 296 -16 203 253 32 42 chr4 182409944 182410039 -19918308 - L2 LINE L2 -821 2493 2400 267 103 0 0 chr4 182412855 182412894 -19915453 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 279 71 0 0 chr4 182412912 182412954 -19915393 + (TTTC)n Simple_repeat Simple_repeat 1 42 0 24 32 0 0 chr4 182413858 182413889 -19914458 + AT_rich Low_complexity Low_complexity 1 31 0 417 298 61 17 chr4 182414904 182415085 -19913262 - MIR SINE MIR -29 233 45 1149 138 36 58 chr4 182415242 182415466 -19912881 - MER20 DNA MER1_type 0 219 1 2148 118 0 7 chr4 182415954 182416260 -19912087 - AluSx SINE Alu -8 304 1 4002 189 48 8 chr4 182416484 182416562 -19911785 - MER6 DNA MER2_type -5 860 787 2220 199 91 6 chr4 182416562 182417035 -19911312 - LTR64 LTR ERVK 0 513 1 4002 189 48 8 chr4 182417035 182417781 -19910566 - MER6 DNA MER2_type -78 787 3 2211 107 0 16 chr4 182417857 182418165 -19910182 + AluSx SINE Alu 1 303 -9 4407 200 79 45 chr4 182418189 182419530 -19908817 - Charlie1a DNA MER1_type -69 1386 1 225 200 25 0 chr4 182420815 182420855 -19907492 + MIR SINE MIR 112 152 -56 348 43 0 0 chr4 182421910 182421956 -19906391 + (TC)n Simple_repeat Simple_repeat 1 46 0 267 200 0 57 chr4 182421967 182422037 -19906310 + CT-rich Low_complexity Low_complexity 4 69 0 249 305 79 79 chr4 182422280 182422298 -19906049 - MIR3 SINE MIR -3 205 188 2037 157 0 6 chr4 182422298 182422610 -19905737 + AluSx SINE Alu 1 310 -2 249 305 79 79 chr4 182422610 182422755 -19905592 - MIR3 SINE MIR -19 189 42 537 83 36 0 chr4 182423016 182423100 -19905247 + L1MA5 LINE L1 5815 5901 -399 1151 239 10 10 chr4 182423204 182423493 -19904854 + MER82 DNA MER2_type 152 440 -213 2337 56 30 30 chr4 182423503 182423808 -19904539 - AluY SINE Alu -4 307 3 244 88 0 0 chr4 182426409 182426443 -19901904 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1985 137 0 11 chr4 182426443 182426728 -19901619 - AluSx SINE Alu -1 315 1 25 31 0 0 chr4 182426781 182426813 -19901534 + AT_rich Low_complexity Low_complexity 1 32 0 635 298 34 4 chr4 182426822 182427060 -19901287 - L1ME4a LINE L1 -264 5857 5613 257 319 57 21 chr4 182427927 182428068 -19900279 - L3b LINE CR1 -116 1467 1322 553 262 28 58 chr4 182429449 182429655 -19898692 + MIR SINE MIR 20 216 -46 189 94 0 0 chr4 182431996 182432028 -19896319 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 21 57 0 0 chr4 182432066 182432101 -19896246 + AT_rich Low_complexity Low_complexity 1 35 0 943 312 182 38 chr4 182433079 182433842 -19894505 + L3 LINE CR1 277 1149 -428 2499 134 44 0 chr4 182434043 182434452 -19893895 - MSTA LTR MaLR -1 427 1 21 0 0 0 chr4 182434638 182434659 -19893688 + AT_rich Low_complexity Low_complexity 1 21 0 2139 122 3 7 chr4 182434662 182434965 -19893382 + AluSx SINE Alu 1 302 -10 891 188 61 5 chr4 182436855 182437068 -19891279 - MER61E LTR ERV1 -4 565 341 234 176 0 39 chr4 182437119 182437170 -19891177 - MER61E LTR ERV1 -404 165 117 * 266 253 0 91 chr4 182437147 182437246 -19891101 - MER61E LTR ERV1 -380 189 100 443 167 12 12 chr4 182437250 182437334 -19891013 - LTR25 LTR ERV1 -438 356 273 15359 169 47 58 chr4 182437476 182438341 -19890006 - MER61E-int LTR ERV1 -6 6990 6118 1929 132 17 0 chr4 182438341 182438629 -19889718 + AluSx SINE Alu 12 304 -8 15359 169 47 58 chr4 182438629 182442104 -19886243 - MER61E-int LTR ERV1 -878 6118 661 676 291 0 0 chr4 182442117 182442289 -19886058 - MER61E-int LTR ERV1 -4571 2520 2349 349 85 0 0 chr4 182442314 182442361 -19885986 - MER61E-int LTR ERV1 -4877 2214 2168 4784 188 85 71 chr4 182442393 182442973 -19885374 - MER61E-int LTR ERV1 -5247 1749 1179 2795 16 0 0 chr4 182442973 182443282 -19885065 + AluY SINE Alu 1 309 -2 4784 188 85 71 chr4 182443282 182444171 -19884176 - MER61E-int LTR ERV1 -5817 1179 259 317 198 123 0 chr4 182444175 182444256 -19884091 - MER61E-int LTR ERV1 -6905 91 1 908 179 71 5 chr4 182444261 182444473 -19883874 - MER61E LTR ERV1 -3 566 341 439 252 18 0 chr4 182444651 182444762 -19883585 - LTR25 LTR ERV1 -438 356 244 292 317 119 0 chr4 182444989 182445090 -19883257 - L2 LINE L2 -8 3305 3193 252 246 0 0 chr4 182445166 182445235 -19883112 + L1MC/D LINE L1 5729 5797 -2011 266 315 31 39 chr4 182447333 182447463 -19880884 - MIR SINE MIR 0 262 134 646 274 66 7 chr4 182448653 182448927 -19879420 - MLT1I LTR MaLR -16 393 104 21 57 0 0 chr4 182449759 182449794 -19878553 + AT_rich Low_complexity Low_complexity 1 35 0 589 270 20 7 chr4 182451497 182451649 -19876698 - MIR SINE MIR -49 213 60 201 161 0 0 chr4 182452372 182452403 -19875944 + (CA)n Simple_repeat Simple_repeat 1 31 0 2288 104 3 0 chr4 182454538 182454835 -19873512 + AluSx SINE Alu 2 299 -13 379 287 132 22 chr4 182455010 182455146 -19873201 - L2 LINE L2 0 3272 3122 1169 137 0 0 chr4 182455162 182455330 -19873017 + FRAM SINE Alu 1 161 -15 504 303 122 16 chr4 182455346 182455650 -19872697 - L2 LINE L2 -174 3139 2804 389 277 77 13 chr4 182455669 182455824 -19872523 - L2 LINE L2 -623 2691 2527 1877 167 0 3 chr4 182455824 182456117 -19872230 + AluJb SINE Alu 1 292 -20 2133 93 24 7 chr4 182457893 182458184 -19870163 + AluSc SINE Alu 1 296 -13 274 379 60 44 chr4 182458264 182458647 -19869700 - L2 LINE L2 -337 2977 2589 767 121 0 17 chr4 182459269 182459385 -19868962 + FRAM SINE Alu 45 158 -18 3829 143 59 10 chr4 182459397 182460126 -19868221 - L1MA8 LINE L1 -3 6288 5524 7787 141 59 3 chr4 182460129 182461700 -19866647 - L1MA8 LINE L1 -743 5403 3777 546 306 123 16 chr4 182461698 182462247 -19866100 - L1M3c LINE L1 -4926 2172 1534 * 432 293 92 42 chr4 182463013 182463252 -19865095 - L1M3c LINE L1 -5964 1134 1 2224 112 0 0 chr4 182463595 182463900 -19864447 + AluSg SINE Alu 1 305 -5 23 54 0 0 chr4 182464088 182464125 -19864222 + AT_rich Low_complexity Low_complexity 1 37 0 208 256 0 0 chr4 182464999 182465042 -19863305 - L2 LINE L2 -8 3264 3222 462 295 217 17 chr4 182465094 182465555 -19862792 + L2 LINE L2 2234 2786 -528 521 218 19 77 chr4 182465572 182465693 -19862654 - MIR SINE MIR 0 262 150 1907 104 97 8 chr4 182465693 182465982 -19862365 - AluSq SINE Alu 0 313 1 521 218 19 77 chr4 182465982 182466016 -19862331 - MIR SINE MIR -112 150 116 2179 154 35 37 chr4 182466329 182466758 -19861589 - MSTA LTR MaLR 0 428 1 1005 211 48 5 chr4 182466928 182467137 -19861210 + MER58A DNA MER1_type 1 218 -6 1497 179 67 74 chr4 182467169 182467600 -19860747 - MSTB1 LTR MaLR 0 432 5 2125 129 0 0 chr4 182467749 182468036 -19860311 + AluSx SINE Alu 1 287 -25 22 0 0 0 chr4 182468036 182468058 -19860289 + AT_rich Low_complexity Low_complexity 1 22 0 1896 181 0 6 chr4 182468259 182468573 -19859774 + AluJo SINE Alu 1 312 0 26 0 0 0 chr4 182468901 182468927 -19859420 + AT_rich Low_complexity Low_complexity 1 26 0 584 217 217 30 chr4 182469856 182470123 -19858224 - L2 LINE L2 -9 3304 2988 724 283 106 38 chr4 182470193 182470589 -19857758 - L2 LINE L2 -817 2497 2075 1418 220 208 68 chr4 182470707 182471623 -19856724 + L2 LINE L2 2254 3313 0 31 26 0 0 chr4 182473884 182473922 -19854425 + AT_rich Low_complexity Low_complexity 1 38 0 2012 166 36 45 chr4 182475162 182475692 -19852655 - Charlie1 DNA MER1_type 0 2761 2237 1230 207 141 26 chr4 182475694 182476071 -19852276 - Charlie1a DNA MER1_type -1035 420 1 294 345 64 0 chr4 182476217 182476327 -19852020 - L2 LINE L2 -872 2442 2326 26 50 0 0 chr4 182479178 182479218 -19849129 + AT_rich Low_complexity Low_complexity 1 40 0 432 343 70 10 chr4 182479962 182480274 -19848073 + L1MEc LINE L1 35 365 -6031 469 201 58 22 chr4 182480298 182480437 -19847910 + L1ME3 LINE L1 5686 5829 -333 215 179 0 0 chr4 182480570 182480609 -19847738 - MIR SINE MIR -149 113 75 570 170 0 2 chr4 182480770 182480960 -19847387 + AluJ SINE Alu 6 230 -82 401 280 200 11 chr4 182481026 182481201 -19847146 - MIR SINE MIR -5 257 50 441 294 165 23 chr4 182481795 182482013 -19846334 + Charlie8 DNA MER1_type 2 250 -2167 260 315 0 0 chr4 182482036 182482109 -19846238 - L2 LINE L2 -47 3266 3194 385 279 188 10 chr4 182482872 182482931 -19845416 + L1MC/D LINE L1 5302 5349 -2459 2423 90 0 10 chr4 182482931 182483241 -19845106 - AluSq SINE Alu -6 307 1 385 279 188 10 chr4 182483241 182483378 -19844969 + L1MC/D LINE L1 5349 5533 -2275 191 288 17 34 chr4 182483435 182483494 -19844853 + L2 LINE L2 3228 3285 -28 1737 179 29 0 chr4 182483597 182483877 -19844470 - AluJb SINE Alu -23 289 2 1434 70 5 5 chr4 182483883 182484069 -19844278 + AluY SINE Alu 111 296 -15 818 133 218 0 chr4 182485660 182485848 -19842499 + Tigger7 DNA MER2_type 2359 2587 0 1928 114 18 4 chr4 182486029 182486302 -19842045 + AluSx SINE Alu 1 277 -35 543 101 0 0 chr4 182486302 182486381 -19841966 + (TA)n Simple_repeat Simple_repeat 1 79 0 29 47 0 0 chr4 182486670 182486713 -19841634 + AT_rich Low_complexity Low_complexity 1 43 0 308 179 0 12 chr4 182487055 182487139 -19841208 + CT-rich Low_complexity Low_complexity 2 84 0 36 0 0 0 chr4 182488789 182488825 -19839522 + GC_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr4 182488829 182488849 -19839498 + (TCC)n Simple_repeat Simple_repeat 1 20 0 714 88 53 0 chr4 182490889 182491003 -19837344 + L1MB4 LINE L1 6059 6178 -2 212 299 161 0 chr4 182491320 182491407 -19836940 - L2 LINE L2 -5 3308 3208 1981 107 0 0 chr4 182492188 182492441 -19835906 - AluSx SINE Alu -59 253 1 1080 182 134 63 chr4 182492537 182492872 -19835475 + MLT1C LTR MaLR 3 361 -106 1988 116 44 0 chr4 182493555 182493830 -19834517 - AluSp SINE Alu -26 287 1 265 309 43 0 chr4 182493831 182493925 -19834422 + MIR3 SINE MIR 111 208 0 2061 108 4 0 chr4 182494066 182494343 -19834004 + AluSx SINE Alu 1 278 -34 1529 159 0 0 chr4 182494343 182494574 -19833773 + AluJb SINE Alu 66 298 -14 1682 166 10 21 chr4 182495540 182495830 -19832517 + AluJo SINE Alu 1 287 -25 501 283 27 33 chr4 182496702 182497002 -19831345 + L1MEc LINE L1 1400 1697 -4699 2181 104 10 7 chr4 182497213 182497511 -19830836 - AluSc SINE Alu -10 299 1 1868 129 55 0 chr4 182497603 182497875 -19830472 - AluSx SINE Alu -25 287 1 391 254 79 32 chr4 182498398 182498524 -19829823 - MIR SINE MIR -130 132 1 1362 235 44 30 chr4 182498871 182499233 -19829114 - LTR16C LTR ERVL -31 460 94 291 282 78 10 chr4 182499403 182499506 -19828841 + L2 LINE L2 3159 3268 -4 986 331 89 11 chr4 182500367 182500846 -19827501 + L2 LINE L2 2511 3028 -285 231 253 74 53 chr4 182500880 182500975 -19827372 + L2 LINE L2 3124 3220 -93 832 271 178 73 chr4 182501522 182502135 -19826212 + L1MEd LINE L1 577 1253 -4866 366 80 0 0 chr4 182502186 182502236 -19826111 + (TA)n Simple_repeat Simple_repeat 2 51 0 2111 129 0 3 chr4 182502237 182502531 -19825816 - AluSx SINE Alu -19 293 1 392 270 6 31 chr4 182502568 182502731 -19825616 + HAL1 LINE L1 1428 1586 -921 1721 179 0 10 chr4 182502748 182503039 -19825308 + AluJo SINE Alu 1 288 -24 333 311 78 36 chr4 182503221 182503414 -19824933 + L1MEd LINE L1 1095 1295 -4910 4774 151 44 52 chr4 182503457 182504404 -19823943 + L1MD1 LINE L1 4966 5893 -349 2199 113 3 0 chr4 182504404 182504697 -19823650 + AluSc SINE Alu 1 294 -15 4774 151 44 52 chr4 182504697 182505045 -19823302 + L1MD1 LINE L1 5893 6242 0 496 267 78 9 chr4 182505107 182505414 -19822933 + L1MEd LINE L1 2166 2473 -3742 475 233 0 25 chr4 182505441 182505561 -19822786 + FLAM_C SINE Alu 27 143 0 443 250 59 77 chr4 182505578 182505622 -19822725 + L1MEd LINE L1 3446 3489 -2726 2480 143 39 5 chr4 182505622 182506036 -19822311 - MSTA LTR MaLR 0 428 1 443 250 59 77 chr4 182506036 182506175 -19822172 + L1MEd LINE L1 3489 3625 -2590 1911 145 3 23 chr4 182506175 182506478 -19821869 + AluSx SINE Alu 1 297 -15 443 250 59 77 chr4 182506478 182506565 -19821782 + L1MEd LINE L1 3625 3712 -2503 585 129 122 7 chr4 182506590 182506737 -19821610 - MER53 DNA DNA -23 166 3 964 269 36 60 chr4 182506748 182506933 -19821414 + L1MEd LINE L1 3731 3919 -2296 2075 142 0 0 chr4 182506933 182507245 -19821102 + AluSx SINE Alu 1 312 0 964 269 36 60 chr4 182507245 182507558 -19820789 + L1MEd LINE L1 3919 4219 -1996 1718 257 58 19 chr4 182507663 182508783 -19819564 + L1MEd LINE L1 4632 5794 -445 1796 158 24 17 chr4 182509539 182509830 -19818517 + AluJo SINE Alu 1 293 -19 1017 157 10 73 chr4 182510703 182510717 -19817630 + AluJo SINE Alu 120 133 -179 336 48 0 0 chr4 182510717 182510759 -19817588 + (TA)n Simple_repeat Simple_repeat 2 43 0 1017 157 10 73 chr4 182510759 182510907 -19817440 + AluJo SINE Alu 133 269 -43 2392 84 3 0 chr4 182510907 182511205 -19817142 + AluSg SINE Alu 1 299 -11 1017 157 10 73 chr4 182511205 182511245 -19817102 + AluJo SINE Alu 269 310 -2 440 211 9 53 chr4 182514141 182514154 -19814193 - MER77 LTR ERV1 -4 601 589 5108 80 8 29 chr4 182514154 182514856 -19813491 + LTR12 LTR ERV1 1 688 0 440 211 9 53 chr4 182514856 182514956 -19813391 - MER77 LTR ERV1 -16 589 493 812 143 34 0 chr4 182514957 182515076 -19813271 + AluJb SINE Alu 1 123 -189 348 24 0 0 chr4 182515078 182515119 -19813228 + (TG)n Simple_repeat Simple_repeat 2 42 0 457 208 50 17 chr4 182515183 182515303 -19813044 - MER77 LTR ERV1 -357 248 125 256 333 30 0 chr4 182515963 182516062 -19812285 - MIR SINE MIR -44 218 117 897 124 0 0 chr4 182516580 182516725 -19811622 - L1MA4 LINE L1 -11 6289 6145 6310 230 70 25 chr4 182516827 182518963 -19809384 - L1M4 LINE L1 -967 5179 2948 452 332 66 45 chr4 182520728 182521150 -19807197 + L1ME3A LINE L1 586 1016 -5103 593 208 192 46 chr4 182521153 182521291 -19807056 + L1ME3A LINE L1 2722 2839 -3290 1686 185 19 25 chr4 182521291 182521605 -19806742 + AluJb SINE Alu 1 312 0 593 208 192 46 chr4 182521605 182521941 -19806406 + L1ME3A LINE L1 2839 3265 -2864 1095 252 114 66 chr4 182522039 182523888 -19804459 + L1ME3A LINE L1 3995 5932 -221 289 158 61 12 chr4 182524079 182524161 -19804186 - MER45C DNA AcHobo -105 848 763 653 190 164 101 chr4 182524284 182524552 -19803795 - MER45C DNA AcHobo -667 286 2 266 255 28 66 chr4 182524556 182524618 -19803729 + L1ME3A LINE L1 6023 6081 -72 1236 206 67 50 chr4 182524618 182524977 -19803370 - MLT1A1 LTR MaLR 0 365 1 266 255 28 66 chr4 182524977 182525020 -19803327 + L1ME3A LINE L1 6081 6124 -29 23 54 0 0 chr4 182525283 182525320 -19803027 + AT_rich Low_complexity Low_complexity 1 37 0 612 243 28 40 chr4 182525513 182525690 -19802657 + MER69A DNA AcHobo 3 177 0 274 366 45 50 chr4 182525839 182526060 -19802287 + L2 LINE L2 3024 3243 -29 23 33 0 0 chr4 182526381 182526411 -19801936 + AT_rich Low_complexity Low_complexity 1 30 0 2274 172 22 17 chr4 182526441 182526900 -19801447 + MER65C LTR ERV1 1 461 0 2255 106 0 0 chr4 182527059 182527352 -19800995 - AluSx SINE Alu -15 297 5 711 158 173 65 chr4 182527391 182527669 -19800678 - Charlie5 DNA MER1_type -71 2541 2234 425 188 79 0 chr4 182527685 182527786 -19800561 - Charlie5 DNA MER1_type -2503 109 1 1060 79 67 30 chr4 182527943 182528108 -19800239 + AluSg/x SINE Alu 126 296 -16 378 287 25 0 chr4 182528313 182528435 -19799912 + (CACG)n Simple_repeat Simple_repeat 3 127 0 198 0 0 0 chr4 182529176 182529198 -19799149 + (A)n Simple_repeat Simple_repeat 1 22 0 226 208 0 0 chr4 182529687 182529749 -19798598 + (CCG)n Simple_repeat Simple_repeat 1 62 0 2150 114 0 3 chr4 182531262 182531560 -19796787 - AluSx SINE Alu -15 297 1 27 0 0 0 chr4 182532274 182532301 -19796046 + AT_rich Low_complexity Low_complexity 1 27 0 1991 143 0 17 chr4 182532764 182533057 -19795290 - AluSx SINE Alu -24 288 1 38 22 0 0 chr4 182533500 182533545 -19794802 + AT_rich Low_complexity Low_complexity 1 45 0 412 176 14 0 chr4 182533559 182533633 -19794714 + FLAM SINE Alu 55 129 -14 2081 163 3 6 chr4 182534229 182534566 -19793781 + MER1B DNA MER1_type 2 337 0 31 0 0 43 chr4 182535067 182535085 -19793262 + AT_rich Low_complexity Low_complexity 1 18 -26 2107 144 0 10 chr4 182535085 182535398 -19792949 - AluJb SINE Alu -2 310 1 31 0 0 43 chr4 182535398 182535425 -19792922 + AT_rich Low_complexity Low_complexity 18 44 0 21 0 0 0 chr4 182536112 182536133 -19792214 + AT_rich Low_complexity Low_complexity 1 21 0 698 220 59 11 chr4 182536875 182537061 -19791286 - MER20 DNA MER1_type -24 195 1 1746 186 6 3 chr4 182537320 182537631 -19790716 + AluJb SINE Alu 1 312 0 21 82 0 0 chr4 182537727 182537776 -19790571 + AT_rich Low_complexity Low_complexity 1 49 0 466 273 82 6 chr4 182538261 182538444 -19789903 - L1MB5 LINE L1 -3 6171 5975 897 234 19 0 chr4 182538547 182538803 -19789544 - L1M4 LINE L1 -3585 2561 2301 232 125 18 18 chr4 182539212 182539268 -19789079 + (TA)n Simple_repeat Simple_repeat 1 56 0 584 375 0 0 chr4 182540183 182540359 -19787988 + MIR SINE MIR 6 181 -81 21 0 0 0 chr4 182540373 182540394 -19787953 + AT_rich Low_complexity Low_complexity 1 21 0 1955 156 0 3 chr4 182540430 182540713 -19787634 + AluSx SINE Alu 16 297 -15 34 0 0 0 chr4 182540889 182540923 -19787424 + AT_rich Low_complexity Low_complexity 1 34 0 2271 62 0 55 chr4 182541369 182541676 -19786671 - AluY SINE Alu -21 290 1 364 307 64 36 chr4 182542027 182542167 -19786180 + L2 LINE L2 3168 3311 -2 1876 160 7 10 chr4 182542574 182542874 -19785473 - AluJo SINE Alu -13 299 1 1289 159 64 9 chr4 182542929 182543149 -19785198 - AluJo SINE Alu 0 312 81 988 141 15 112 chr4 182544410 182544481 -19783866 - MER5A DNA MER1_type 0 189 113 2224 70 0 7 chr4 182544481 182544803 -19783544 + AluY SINE Alu 1 320 0 988 141 15 112 chr4 182544803 182544936 -19783411 - MER5A DNA MER1_type -76 113 4 294 320 85 2 chr4 182544966 182545109 -19783238 + MIR SINE MIR 37 143 -65 1470 114 5 14 chr4 182545267 182545478 -19782869 - AluSg/x SINE Alu -7 305 97 2228 89 3 54 chr4 182545701 182546017 -19782330 - AluSq SINE Alu -13 300 1 214 301 12 36 chr4 182546792 182546875 -19781472 + MER5A DNA MER1_type 3 83 -106 1484 175 82 0 chr4 182546877 182547134 -19781213 + AluJo SINE Alu 1 278 -34 530 291 111 0 chr4 182547585 182547784 -19780563 - L3 LINE CR1 -100 1477 1257 2179 120 0 0 chr4 182548037 182548338 -19780009 + AluSx SINE Alu 1 301 -11 1976 228 26 54 chr4 182548755 182549591 -19778756 - L1 LINE L1 -3407 4158 3335 2320 79 0 3 chr4 182549591 182549883 -19778464 + AluY SINE Alu 1 291 -20 1976 228 26 54 chr4 182549883 182550184 -19778163 - L1 LINE L1 -4230 3335 3027 490 325 175 16 chr4 182550238 182550546 -19777801 + L2 LINE L2 2921 3277 -36 1285 233 288 17 chr4 182551102 182551686 -19776661 - L2 LINE L2 -493 2821 2080 339 25 0 0 chr4 182551941 182551981 -19776366 + (TG)n Simple_repeat Simple_repeat 1 40 0 2126 102 0 3 chr4 182552001 182552322 -19776025 + AluSc SINE Alu 1 320 0 321 47 0 0 chr4 182554694 182554737 -19773610 + (TG)n Simple_repeat Simple_repeat 1 43 0 180 0 0 0 chr4 182554736 182554756 -19773591 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 198 330 163 20 chr4 182555084 182555313 -19773034 - L2 LINE L2 -270 3002 2751 273 284 112 30 chr4 182555621 182555755 -19772592 - L2 LINE L2 -925 2389 2245 746 231 136 23 chr4 182555861 182556082 -19772265 - MIR SINE MIR -15 247 2 312 264 58 8 chr4 182556132 182556253 -19772094 - L2 LINE L2 -1206 2108 1982 219 69 0 0 chr4 182557464 182557493 -19770854 + (ATG)n Simple_repeat Simple_repeat 1 29 0 231 235 0 0 chr4 182559185 182559236 -19769111 + (TAA)n Simple_repeat Simple_repeat 1 51 0 479 282 188 11 chr4 182559242 182559423 -19768924 - MIR SINE MIR -34 228 16 236 114 0 0 chr4 182559744 182559779 -19768568 + L2 LINE L2 3238 3272 0 213 284 34 11 chr4 182559999 182560087 -19768260 + MIR3 SINE MIR 119 208 0 10161 156 31 33 chr4 182560096 182562155 -19766192 - L1MC3 LINE L1 0 7785 5725 2257 112 3 3 chr4 182562155 182562451 -19765896 + AluSx SINE Alu 2 297 -15 10161 156 31 33 chr4 182562451 182562463 -19765884 - L1MC3 LINE L1 -2060 5725 5714 2014 112 3 61 chr4 182562463 182562776 -19765571 + AluSx SINE Alu 1 295 -17 10161 156 31 33 chr4 182562776 182562833 -19765514 - L1MC3 LINE L1 -2071 5714 5659 2414 78 3 0 chr4 182563941 182564248 -19764099 + AluY SINE Alu 2 309 -2 2282 117 0 0 chr4 182564817 182565117 -19763230 - AluSx SINE Alu -12 300 1 442 284 18 0 chr4 182566347 182566456 -19761891 + L2 LINE L2 3202 3312 -1 33 66 0 0 chr4 182566799 182566860 -19761487 + AT_rich Low_complexity Low_complexity 1 61 0 220 306 42 0 chr4 182568057 182568129 -19760218 + MER5B DNA MER1_type 103 177 -1 252 298 44 35 chr4 182570851 182570965 -19757382 - MIR SINE MIR -74 188 74 958 140 12 12 chr4 182571702 182571866 -19756481 + FRAM SINE Alu 1 164 -2 567 116 23 15 chr4 182572125 182572393 -19755954 + (CA)n Simple_repeat Simple_repeat 1 270 0 320 197 16 0 chr4 182572511 182572572 -19755775 - MIR3 SINE MIR -21 187 126 193 326 0 0 chr4 182572717 182572766 -19755581 - L2 LINE L2 -13 3259 3211 321 118 0 0 chr4 182572813 182572864 -19755483 + (TTCC)n Simple_repeat Simple_repeat 1 51 0 973 142 0 19 chr4 182572864 182573019 -19755328 - FRAM SINE Alu -17 159 8 293 225 14 0 chr4 182573183 182573254 -19755093 - MLT1I LTR MaLR -57 352 281 320 212 70 154 chr4 182573424 182573782 -19754565 + MLT1I LTR MaLR 66 393 -16 2055 136 133 13 chr4 182573870 182574252 -19754095 + MSTA LTR MaLR 1 428 0 443 234 91 67 chr4 182575460 182575669 -19752678 + L2 LINE L2 3099 3312 -1 202 298 53 0 chr4 182576526 182576583 -19751764 + L2 LINE L2 3250 3309 -4 28 61 0 0 chr4 182578764 182578813 -19749534 + AT_rich Low_complexity Low_complexity 1 49 0 251 228 0 0 chr4 182578862 182578919 -19749428 + T-rich Low_complexity Low_complexity 1 57 0 1795 228 12 42 chr4 182578958 182579366 -19748981 - MSTD LTR MaLR 0 396 1 1868 130 41 0 chr4 182579856 182580126 -19748221 + AluSx SINE Alu 1 281 -31 337 107 18 0 chr4 182580126 182580170 -19748177 + AluSq SINE Alu 1 315 0 237 237 51 0 chr4 182581080 182581139 -19747208 - MIR SINE MIR 0 262 201 884 161 69 0 chr4 182581258 182581432 -19746915 + MER53 DNA DNA 4 189 0 1649 177 13 20 chr4 182581696 182581996 -19746351 - AluJo SINE Alu -13 299 2 466 360 20 0 chr4 182582799 182582952 -19745395 - MER91A DNA MER1_type -39 157 2 385 121 30 30 chr4 182582977 182583043 -19745304 - MLT1C LTR MaLR -401 66 1 309 258 0 0 chr4 182583849 182583915 -19744432 + L3b LINE CR1 1302 1367 -216 1538 194 3 40 chr4 182584521 182584820 -19743527 - AluJo SINE Alu -20 292 5 373 209 157 9 chr4 182585086 182585201 -19743146 + L1MEd LINE L1 11 142 -5977 923 303 64 56 chr4 182585237 182585735 -19742612 + L1MEd LINE L1 222 723 -5396 1968 142 0 55 chr4 182585735 182586060 -19742287 + AluJb SINE Alu 1 307 -5 688 224 90 45 chr4 182586170 182586371 -19741976 + L1PA16 LINE L1 5957 6166 0 660 143 0 0 chr4 182587457 182587569 -19740778 + (TTCC)n Simple_repeat Simple_repeat 4 115 0 334 149 14 14 chr4 182587603 182587677 -19740670 + CT-rich Low_complexity Low_complexity 2 75 0 525 197 98 0 chr4 182588468 182588600 -19739747 + MER103 DNA DNA 14 158 -8 287 262 219 14 chr4 182588711 182588921 -19739426 + LTR50 LTR ERVL 25 277 -518 709 239 233 19 chr4 182588997 182589311 -19739036 + LTR50 LTR ERVL 407 787 -8 2140 96 4 4 chr4 182589779 182590094 -19738253 + AluSx SINE Alu 2 316 0 234 241 19 136 chr4 182590103 182590265 -19738082 - MER5A DNA MER1_type -4 185 32 333 0 0 0 chr4 182590348 182590385 -19737962 + (TG)n Simple_repeat Simple_repeat 2 38 0 183 80 0 0 chr4 182592489 182592514 -19735833 + (CA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr4 182593326 182593349 -19734998 + AT_rich Low_complexity Low_complexity 1 23 0 1645 175 0 26 chr4 182593349 182593652 -19734695 - AluJb SINE Alu -17 295 1 28 0 0 0 chr4 182593717 182593745 -19734602 + AT_rich Low_complexity Low_complexity 1 28 0 957 263 78 38 chr4 182594111 182594484 -19733863 + MLT1J2 LTR MaLR 6 393 -57 1360 199 46 0 chr4 182594494 182594755 -19733592 + AluJb SINE Alu 21 293 -19 235 250 45 8 chr4 182594764 182594896 -19733451 + (TA)n Simple_repeat Simple_repeat 2 138 0 243 405 46 13 chr4 182595710 182595863 -19732484 - L2 LINE L2 -40 3232 3075 1711 204 62 11 chr4 182595876 182596248 -19732099 - MLT1C LTR MaLR -8 459 69 291 292 50 25 chr4 182596837 182596957 -19731390 - L2 LINE L2 0 3313 3191 898 140 13 40 chr4 182596957 182597107 -19731240 + FRAM SINE Alu 1 146 -30 219 375 42 33 chr4 182597168 182597288 -19731059 + L2 LINE L2 3151 3271 -1 1891 181 75 21 chr4 182597817 182598192 -19730155 - MSTD LTR MaLR 0 396 2 369 106 0 61 chr4 182598819 182598885 -19729462 - FLAM_A SINE Alu -5 128 75 658 236 16 0 chr4 182598930 182599057 -19729290 - FLAM_A SINE Alu -3 130 2 405 0 0 0 chr4 182599172 182599217 -19729130 + (TG)n Simple_repeat Simple_repeat 2 46 0 2114 123 0 0 chr4 182599217 182599502 -19728845 - AluSq SINE Alu -28 285 1 1118 207 33 0 chr4 182599600 182599813 -19728534 - MER58A DNA MER1_type -4 220 1 443 249 92 40 chr4 182599828 182600001 -19728346 + MLT1L LTR MaLR 162 343 -272 912 85 0 0 chr4 182601812 182601930 -19726417 - AluSg/x SINE Alu -11 301 184 189 74 0 0 chr4 182602457 182602484 -19725863 + (TCC)n Simple_repeat Simple_repeat 2 28 0 39 38 0 0 chr4 182604203 182604256 -19724091 + GC_rich Low_complexity Low_complexity 1 53 0 275 236 94 57 chr4 182604513 182604619 -19723728 + L2 LINE L2 3148 3257 -15 192 40 0 0 chr4 182604712 182604737 -19723610 + (CAA)n Simple_repeat Simple_repeat 2 26 0 228 216 0 0 chr4 182604758 182604809 -19723538 + A-rich Low_complexity Low_complexity 1 51 0 35 63 0 0 chr4 182605489 182605552 -19722795 + AT_rich Low_complexity Low_complexity 1 63 0 211 250 158 0 chr4 182605969 182606045 -19722302 - L2 LINE L2 -12 3260 3173 2227 111 11 97 chr4 182606433 182606813 -19721534 - MER7A DNA MER2_type -1 345 1 712 182 9 8 chr4 182609095 182609243 -19719104 + L1MA4 LINE L1 5888 6043 -257 370 171 13 0 chr4 182609228 182609304 -19719043 + L1MB3 LINE L1 6087 6163 -20 * 217 155 35 0 chr4 182609309 182609367 -19718980 + (TA)n Simple_repeat Simple_repeat 1 60 0 787 184 0 81 chr4 182609382 182609556 -19718791 - MLT1E1 LTR MaLR -494 160 1 432 160 110 10 chr4 182609557 182609657 -19718690 - L1ME LINE L1 -358 5804 5695 4108 174 12 14 chr4 182609725 182610448 -19717899 - L1MB4 LINE L1 -6 6174 5453 1881 192 84 67 chr4 182611242 182611753 -19716594 - MLT2B1 LTR ERVL 0 520 1 360 341 16 16 chr4 182612018 182612144 -19716203 - L2 LINE L2 -9 3263 3138 2073 119 31 0 chr4 182612772 182613058 -19715289 + AluSx SINE Alu 1 295 -17 448 242 27 78 chr4 182614100 182614307 -19714040 + MER20B DNA MER1_type 1 202 -17 2457 151 42 36 chr4 182614327 182614803 -19713544 + L1MB3 LINE L1 5501 5979 -204 183 42 0 0 chr4 182615000 182615024 -19713323 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4096 162 40 32 chr4 182616338 182617110 -19711237 - L1MD1 LINE L1 0 6242 5465 308 284 74 0 chr4 182617203 182617298 -19711049 + MIR SINE MIR 39 140 -122 23 33 0 0 chr4 182617407 182617437 -19710910 + AT_rich Low_complexity Low_complexity 1 30 0 825 174 18 0 chr4 182617462 182617620 -19710727 + L1MC/D LINE L1 5456 5622 -562 28 0 0 0 chr4 182617982 182618010 -19710337 + AT_rich Low_complexity Low_complexity 1 28 0 1042 144 35 12 chr4 182618307 182618480 -19709867 + FRAM SINE Alu 1 176 0 1434 196 0 14 chr4 182619319 182619333 -19709014 - AluJo SINE Alu -14 298 285 588 65 0 0 chr4 182619333 182619410 -19708937 + (TTCC)n Simple_repeat Simple_repeat 2 78 0 1434 196 0 14 chr4 182619410 182619670 -19708677 - AluJo SINE Alu -27 285 28 206 121 0 0 chr4 182619996 182620029 -19708318 + (A)n Simple_repeat Simple_repeat 1 33 0 2138 126 3 3 chr4 182621059 182621368 -19706979 - AluSx SINE Alu -3 309 1 386 269 35 29 chr4 182621410 182621581 -19706766 + L1MC4a LINE L1 7181 7352 -456 22 0 0 0 chr4 182621584 182621606 -19706741 + AT_rich Low_complexity Low_complexity 1 22 0 950 170 0 13 chr4 182621606 182621765 -19706582 - FRAM SINE Alu -20 156 1 233 217 72 14 chr4 182621771 182621840 -19706507 + L1MC4 LINE L1 7426 7498 -544 * 241 287 139 0 chr4 182621821 182621936 -19706411 + L1MC5 LINE L1 7311 7441 -520 318 256 131 59 chr4 182622010 182622138 -19706209 + L1MC5 LINE L1 7546 7663 -379 417 191 19 19 chr4 182622138 182622243 -19706104 + L1MA4A LINE L1 6199 6303 0 318 256 131 59 chr4 182622243 182622590 -19705757 + L1MC5 LINE L1 7663 8042 0 26 64 0 0 chr4 182622691 182622738 -19705609 + AT_rich Low_complexity Low_complexity 1 47 0 493 95 0 0 chr4 182623109 182623172 -19705175 + Tigger2 DNA MER2_type 7 69 -2649 * 2959 99 38 2 chr4 182623170 182623593 -19704754 + Tigger2 DNA MER2_type 2280 2717 -1 24 0 0 0 chr4 182623646 182623670 -19704677 + AT_rich Low_complexity Low_complexity 1 24 0 266 264 7 142 chr4 182623762 182623910 -19704437 + MIR3 SINE MIR 8 135 -73 358 273 13 21 chr4 182624031 182624158 -19704189 + MLT1H LTR MaLR 1 170 -379 1638 188 0 0 chr4 182624168 182624445 -19703902 + AluJo SINE Alu 5 281 -31 234 91 0 0 chr4 182624445 182624478 -19703869 + (CA)n Simple_repeat Simple_repeat 1 33 0 241 83 99 16 chr4 182624478 182624599 -19703748 + (TA)n Simple_repeat Simple_repeat 2 132 0 204 118 29 0 chr4 182628760 182628794 -19699553 + CT-rich Low_complexity Low_complexity 1 35 0 1335 201 39 11 chr4 182630377 182630661 -19697686 + Charlie1a DNA MER1_type 51 342 -1113 583 168 50 0 chr4 182630768 182630869 -19697478 - U6 snRNA snRNA -1 106 1 1779 186 71 27 chr4 182630869 182631214 -19697133 + Charlie1a DNA MER1_type 328 656 -2105 1733 196 22 16 chr4 182631214 182631577 -19696770 - MLT1A1 LTR MaLR 0 365 1 1779 186 71 27 chr4 182631577 182631820 -19696527 + Charlie1a DNA MER1_type 656 1034 -421 267 111 0 0 chr4 182631849 182631885 -19696462 - U6 snRNA snRNA -71 36 1 558 244 0 0 chr4 182631885 182632004 -19696343 + Charlie1a DNA MER1_type 328 446 -1009 1928 102 4 0 chr4 182632009 182632274 -19696073 + AluSq SINE Alu 23 288 -25 26 0 0 0 chr4 182632779 182632805 -19695542 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr4 182633600 182633620 -19694727 + (T)n Simple_repeat Simple_repeat 1 20 0 1974 140 73 22 chr4 182634157 182634513 -19693834 - THE1C LTR MaLR -1 374 1 236 282 146 27 chr4 182635419 182635529 -19692818 - MIR SINE MIR -94 168 46 189 0 0 0 chr4 182635764 182635785 -19692562 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 665 162 0 0 chr4 182635786 182635949 -19692398 - AluSg/x SINE Alu 0 347 185 231 259 12 59 chr4 182636267 182636352 -19691995 + MER5A DNA MER1_type 41 121 -68 279 0 0 0 chr4 182638910 182638941 -19689406 + (CA)n Simple_repeat Simple_repeat 1 31 0 1212 143 0 5 chr4 182641514 182641710 -19686637 + AluSg/x SINE Alu 116 310 -2 17895 141 72 13 chr4 182641841 182644977 -19683370 - L1M1 LINE L1 -3982 3583 16 1761 141 64 3 chr4 182644977 182645289 -19683058 - L1MA4 LINE L1 -45 6255 5925 * 4119 193 15 15 chr4 182645273 182646521 -19681826 - L1 LINE L1 -3068 3780 2534 742 131 0 7 chr4 182646521 182646658 -19681689 + Charlie5 DNA MER1_type 2438 2573 -39 739 318 102 43 chr4 182648760 182649251 -19679096 - L3 LINE CR1 -1 1576 1057 1214 299 105 4 chr4 182649889 182650430 -19677917 + Charlie7 DNA MER1_type 56 651 -1961 264 205 229 16 chr4 182650455 182650577 -19677770 + Charlie7 DNA MER1_type 2434 2581 -31 552 323 94 4 chr4 182650949 182651184 -19677163 - MIR SINE MIR -3 259 4 2332 84 7 0 chr4 182651545 182651853 -19676494 + AluSp SINE Alu 1 310 -3 363 229 29 19 chr4 182656457 182656562 -19671785 - MIR SINE MIR -102 160 55 259 222 0 19 chr4 182657004 182657058 -19671289 - L2 LINE L2 -219 3053 3001 21 0 0 0 chr4 182657916 182657937 -19670410 + AT_rich Low_complexity Low_complexity 1 21 0 192 77 0 0 chr4 182659207 182659233 -19669114 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 238 219 0 37 chr4 182659280 182659362 -19668985 + GA-rich Low_complexity Low_complexity 2 80 0 264 258 0 0 chr4 182660941 182661003 -19667344 + (CCA)n Simple_repeat Simple_repeat 1 62 0 27 0 0 0 chr4 182664642 182664669 -19663678 + GC_rich Low_complexity Low_complexity 1 27 0 194 91 30 0 chr4 182665206 182665239 -19663108 + CT-rich Low_complexity Low_complexity 1 34 0 658 231 30 30 chr4 182665571 182665740 -19662607 - MER5B DNA MER1_type -3 175 7 22 0 0 0 chr4 182666287 182666309 -19662038 + AT_rich Low_complexity Low_complexity 1 22 0 1840 129 11 3 chr4 182666390 182666712 -19661635 + AluSx SINE Alu 1 312 0 228 283 53 35 chr4 182669812 182669925 -19658422 - MLT1I LTR MaLR -93 316 202 1696 126 39 39 chr4 182670417 182670702 -19657645 + AluJb SINE Alu 1 285 -27 23 0 0 0 chr4 182670703 182670726 -19657621 + AT_rich Low_complexity Low_complexity 1 23 0 280 157 29 43 chr4 182671085 182671155 -19657192 - LTR33A LTR ERVL 0 523 455 1217 130 137 56 chr4 182671680 182671950 -19656397 + MSTA LTR MaLR 4 295 -133 1141 112 0 0 chr4 182672042 182672203 -19656144 + AluSc SINE Alu 136 296 -13 420 234 142 28 chr4 182674145 182674286 -19654061 - MIR SINE MIR -43 219 63 444 321 187 13 chr4 182674315 182674630 -19653717 - L2 LINE L2 -2 3270 2901 265 334 193 31 chr4 182674720 182675166 -19653181 - L2 LINE L2 -558 2756 2239 443 276 9 0 chr4 182675214 182675319 -19653028 - MIR SINE MIR -10 252 147 2352 87 0 0 chr4 182675394 182675705 -19652642 + AluY SINE Alu 1 311 0 2070 105 0 29 chr4 182676243 182676549 -19651798 - AluSx SINE Alu -15 297 1 384 250 106 0 chr4 182677018 182677122 -19651225 + MIR3 SINE MIR 82 196 -12 189 171 0 0 chr4 182677292 182677327 -19651020 + (TG)n Simple_repeat Simple_repeat 2 36 0 249 337 53 0 chr4 182677357 182677452 -19650895 - MIR SINE MIR -71 137 38 252 143 0 0 chr4 182677990 182678032 -19650315 + (TAG)n Simple_repeat Simple_repeat 2 43 0 218 308 60 60 chr4 182678124 182678241 -19650106 - L2 LINE L2 -4 3268 3152 207 0 0 0 chr4 182679042 182679065 -19649282 + (TG)n Simple_repeat Simple_repeat 2 24 0 1360 143 11 34 chr4 182679065 182679330 -19649017 - AluJb SINE Alu -28 284 26 191 191 15 118 chr4 182680474 182680542 -19647805 - L2 LINE L2 -11 3302 3242 2182 78 0 0 chr4 182685762 182686082 -19642265 - AluSx SINE Alu 0 320 1 207 0 0 0 chr4 182688997 182689020 -19639327 + (TA)n Simple_repeat Simple_repeat 2 24 0 2096 84 0 39 chr4 182689540 182689850 -19638497 - AluSx SINE Alu -12 300 3 298 287 30 20 chr4 182690189 182690290 -19638057 + MIR3 SINE MIR 104 205 -3 207 87 65 22 chr4 182690316 182690362 -19637985 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 955 249 128 63 chr4 182791780 182792418 -19535929 + HAL1 LINE L1 1828 2507 0 319 297 94 16 chr4 182793908 182794036 -19534311 + MIR SINE MIR 6 143 -119 220 255 0 0 chr4 182794068 182794119 -19534228 - L2 LINE L2 -53 3219 3169 225 409 0 0 chr4 182794239 182794327 -19534020 - L2 LINE L2 -496 2818 2731 1842 153 14 3 chr4 182794732 182795027 -19533320 - AluSx SINE Alu -14 298 1 209 176 0 0 chr4 182795373 182795407 -19532940 + CT-rich Low_complexity Low_complexity 4 37 0 189 107 0 0 chr4 182795413 182795441 -19532906 + (T)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr4 182795802 182795823 -19532524 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr4 182796198 182796230 -19532117 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr4 182796779 182796809 -19531538 + AT_rich Low_complexity Low_complexity 1 30 0 218 316 0 0 chr4 182797479 182797536 -19530811 + GA-rich Low_complexity Low_complexity 2 58 0 1347 316 93 17 chr4 182797710 182798824 -19529523 - L1MC4a LINE L1 -863 5283 4968 23 0 0 0 chr4 182798869 182798892 -19529455 + AT_rich Low_complexity Low_complexity 1 23 0 1869 126 18 11 chr4 182799473 182799759 -19528588 + AluSx SINE Alu 1 288 -24 204 40 0 0 chr4 182799759 182799784 -19528563 + (GA)n Simple_repeat Simple_repeat 2 26 0 251 333 13 0 chr4 182800855 182800933 -19527414 - MER20B DNA MER1_type -609 174 96 21 71 0 0 chr4 182801553 182801595 -19526752 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr4 182802210 182802245 -19526102 + AT_rich Low_complexity Low_complexity 1 35 0 463 256 100 50 chr4 182802641 182802801 -19525546 - MIR SINE MIR -17 245 78 1871 156 38 57 chr4 182803443 182803815 -19524532 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr4 182804098 182804120 -19524227 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4 182804553 182804584 -19523763 + AT_rich Low_complexity Low_complexity 1 31 0 255 321 110 0 chr4 182806169 182806278 -19522069 - MIR SINE MIR -97 165 45 823 315 88 18 chr4 182809306 182809807 -19518540 + L1ME4a LINE L1 5329 5864 -257 1577 158 52 24 chr4 182811934 182812225 -19516122 - AluJo SINE Alu -12 300 2 451 258 80 26 chr4 182812445 182812596 -19515751 + L2 LINE L2 3155 3313 0 21 0 0 0 chr4 182813389 182813410 -19514937 + AT_rich Low_complexity Low_complexity 1 21 0 214 267 0 0 chr4 182813423 182813468 -19514879 + polypyrimidine Low_complexity Low_complexity 3 47 0 534 31 0 0 chr4 182814431 182814495 -19513852 + (GAAA)n Simple_repeat Simple_repeat 3 66 0 29 0 0 0 chr4 182814641 182814670 -19513677 + AT_rich Low_complexity Low_complexity 1 29 0 602 263 69 6 chr4 182815087 182815247 -19513100 + MIR3 SINE MIR 35 204 -4 2531 4 0 0 chr4 182815923 182816200 -19512147 + AluYa5 SINE Alu 35 311 0 220 283 164 19 chr4 182816385 182816544 -19511803 - MIR SINE MIR 0 262 81 556 280 91 95 chr4 182816629 182817126 -19511221 - L2 LINE L2 0 3313 2819 516 277 123 23 chr4 182817601 182817821 -19510526 + MER46C DNA MER2_type 1 242 -96 351 0 0 0 chr4 182817821 182817860 -19510487 + (TG)n Simple_repeat Simple_repeat 2 40 0 246 274 0 60 chr4 182818515 182818599 -19509748 - MIR SINE MIR -86 122 44 23 0 0 0 chr4 182819064 182819087 -19509260 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 182819480 182819503 -19508844 + AT_rich Low_complexity Low_complexity 1 23 0 517 352 26 13 chr4 182820261 182820494 -19507853 + MIR SINE MIR 13 248 -14 1462 220 51 12 chr4 182821393 182821729 -19506618 - MLT1A1 LTR MaLR -16 349 1 676 285 105 55 chr4 182822301 182822314 -19506033 + L1MDa LINE L1 1233 1244 -5296 2714 62 4 133 chr4 182822314 182822794 -19505553 + L1PA6 LINE L1 5734 6151 -3 676 285 105 55 chr4 182822794 182823602 -19504745 + L1MDa LINE L1 1244 2561 -3979 1523 180 48 80 chr4 182823739 182824185 -19504162 + MLT1B LTR MaLR 1 390 0 232 235 109 25 chr4 182824500 182824619 -19503728 + L1MDa LINE L1 2680 2808 -3732 230 287 64 0 chr4 182824657 182824751 -19503596 + L1MDa LINE L1 2873 2972 -3568 428 155 0 36 chr4 182824863 182824947 -19503400 - L1MC1 LINE L1 0 6333 6253 1149 145 92 0 chr4 182824950 182825178 -19503169 - MER44D DNA MER2_type -44 565 47 3848 234 23 21 chr4 182825178 182826194 -19502153 - L1M4 LINE L1 -1985 4161 3144 3520 75 4 8 chr4 182826191 182826973 -19501374 - L1P3 LINE L1 -426 5728 4952 * 2722 212 5 14 chr4 182826970 182827601 -19500746 - L1PA13 LINE L1 -4510 2277 1653 * 4440 115 7 1 chr4 182827602 182828280 -19500067 + L1P LINE L1 4300 4981 -1165 1712 275 34 34 chr4 182828390 182828918 -19499429 + L1MB7 LINE L1 8 535 -6324 * 5389 140 20 11 chr4 182828917 182829864 -19498483 + L1PA16 LINE L1 5212 6158 -8 34 0 0 0 chr4 182829893 182829927 -19498420 + AT_rich Low_complexity Low_complexity 1 34 0 1963 130 0 7 chr4 182829983 182830287 -19498060 + AluSx SINE Alu 5 306 0 1032 271 58 0 chr4 182830291 182830549 -19497798 + L1MB7 LINE L1 571 843 -6016 1037 199 76 0 chr4 182830552 182830763 -19497584 + MER46B DNA MER2_type 4 105 -131 21 0 0 0 chr4 182830832 182830853 -19497494 + AT_rich Low_complexity Low_complexity 1 21 0 1512 247 92 41 chr4 182830948 182831540 -19496807 + L1MB7 LINE L1 2472 3032 -3925 183 80 0 0 chr4 182831540 182831565 -19496782 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 5897 185 19 42 chr4 182831568 182833680 -19494667 - L1PA15 LINE L1 -14 6151 4051 1512 247 92 41 chr4 182833680 182834229 -19494118 + L1MB7 LINE L1 3033 3646 -3311 * 2721 206 79 19 chr4 182834224 182835883 -19492464 + L1MB7 LINE L1 4887 6766 -223 489 168 21 0 chr4 182835885 182835975 -19492372 + MLT2B3 LTR ERVL 1 93 -418 2056 180 28 30 chr4 182835975 182836402 -19491945 - MSTB LTR MaLR 0 426 1 9291 172 18 8 chr4 182836407 182838022 -19490325 - MSTB-int LTR MaLR -6 1645 15 1985 163 52 47 chr4 182838053 182838477 -19489870 - MSTB LTR MaLR 0 426 1 2147 243 33 7 chr4 182838478 182838931 -19489416 + MLT2B3 LTR ERVL 90 554 0 570 211 0 16 chr4 182838937 182839065 -19489282 + L1MB7 LINE L1 6772 6897 -98 497 305 105 42 chr4 182839154 182839736 -19488611 - L1ME3A LINE L1 -289 5881 5255 1074 188 5 0 chr4 182839832 182840024 -19488323 + AluJo SINE Alu 5 197 -115 1934 125 56 3 chr4 182840180 182840468 -19487879 - AluJo SINE Alu -9 303 1 398 285 91 38 chr4 182840643 182840829 -19487518 + MIR SINE MIR 63 258 -4 576 310 54 65 chr4 182840987 182841355 -19486992 - MLT1J LTR MaLR -116 395 32 2091 125 0 3 chr4 182841425 182841722 -19486625 - AluSg SINE Alu -14 296 1 184 269 64 26 chr4 182843443 182843521 -19484826 - L2 LINE L2 -1164 2150 2070 23 0 0 0 chr4 182844700 182844723 -19483624 + AT_rich Low_complexity Low_complexity 1 23 0 2507 46 3 3 chr4 182845228 182845532 -19482815 + AluY SINE Alu 1 304 -7 22 0 0 0 chr4 182847367 182847389 -19480958 + AT_rich Low_complexity Low_complexity 1 22 0 341 268 106 49 chr4 182847486 182847609 -19480738 + MIR3 SINE MIR 4 133 -75 336 306 24 48 chr4 182847650 182847774 -19480573 - L2 LINE L2 -1 3312 3192 1841 325 133 17 chr4 182847883 182849062 -19479285 - L2 LINE L2 -123 3190 1866 1755 160 62 7 chr4 182849099 182849408 -19478939 + AluSx SINE Alu 1 312 0 1699 213 119 88 chr4 182849509 182850278 -19478069 - LTR1B LTR ERV1 -37 983 1 355 285 54 15 chr4 182850279 182850409 -19477938 + MIR SINE MIR 78 212 -50 23 33 0 0 chr4 182850793 182850823 -19477524 + AT_rich Low_complexity Low_complexity 1 30 0 1027 168 4 126 chr4 182851280 182851542 -19476805 + MLT2B1 LTR ERVL 287 516 -4 483 314 38 22 chr4 182851546 182851861 -19476486 - L1M4 LINE L1 -1175 5040 4721 854 154 0 0 chr4 182851863 182851993 -19476354 - AluJo SINE Alu -177 135 6 6624 127 17 3 chr4 182851999 182853000 -19475347 - Tigger1 DNA MER2_type -1403 1015 1 1092 303 71 11 chr4 182853145 182854030 -19474317 - L1MEc LINE L1 -3418 2797 1896 2881 124 19 2 chr4 182854031 182854458 -19473889 - MER57B LTR ERV1 0 434 1 305 310 20 0 chr4 182854484 182854584 -19473763 - L1MEc LINE L1 -4574 1822 1721 271 333 28 14 chr4 182854586 182854727 -19473620 - L1MEc LINE L1 -5926 279 137 1736 278 97 34 chr4 182854733 182855746 -19472601 + L2 LINE L2 2242 3308 -5 1341 213 114 29 chr4 182855854 182856120 -19472227 - MLT1D LTR MaLR -1 487 183 309 26 0 0 chr4 182856120 182856158 -19472189 + (TG)n Simple_repeat Simple_repeat 2 39 0 1341 213 114 29 chr4 182856158 182856340 -19472007 - MLT1D LTR MaLR -305 183 18 312 267 60 40 chr4 182856391 182856541 -19471806 + MLT1J LTR MaLR 357 509 -2 323 383 51 14 chr4 182857595 182857812 -19470535 + L2 LINE L2 2545 2769 -545 670 303 54 29 chr4 182857827 182858068 -19470279 + MIR SINE MIR 2 248 -14 1773 167 10 0 chr4 182858472 182858765 -19469582 - AluSx SINE Alu -16 296 1 2247 133 118 8 chr4 182858767 182859150 -19469197 - MSTA LTR MaLR -3 425 1 251 305 46 58 chr4 182859669 182859843 -19468504 + L1MC5 LINE L1 7726 7897 -64 221 119 24 0 chr4 182861942 182861984 -19466363 + (CA)n Simple_repeat Simple_repeat 1 43 0 834 227 0 0 chr4 182862612 182862762 -19465585 - FRAM SINE Alu -16 150 1 180 77 0 0 chr4 182863116 182863142 -19465205 + (TC)n Simple_repeat Simple_repeat 2 27 0 1494 136 0 0 chr4 182864198 182864412 -19463935 - AluSg/x SINE Alu -16 294 81 378 0 0 0 chr4 182864942 182864984 -19463363 + (CA)n Simple_repeat Simple_repeat 2 43 0 517 313 104 25 chr4 182865169 182865409 -19462938 - MIR SINE MIR 0 262 4 1152 94 165 0 chr4 182865681 182865851 -19462496 + AluSg/x SINE Alu 81 278 -32 289 309 160 49 chr4 182865851 182866201 -19462146 + L2 LINE L2 2369 2757 -557 207 277 204 29 chr4 182866457 182866594 -19461753 - L2 LINE L2 -1 3312 3152 43 71 0 0 chr4 182866635 182866720 -19461627 + AT_rich Low_complexity Low_complexity 1 85 0 2360 112 0 0 chr4 182866727 182867040 -19461307 + AluSq SINE Alu 1 313 0 354 206 244 0 chr4 182867054 182867185 -19461162 + L1M4 LINE L1 3535 3697 -2449 1191 155 7 134 chr4 182867215 182867499 -19460848 + AluJo SINE Alu 63 310 -2 535 259 6 12 chr4 182867499 182867661 -19460686 + L1M4 LINE L1 3696 3856 -2290 * 2059 208 18 7 chr4 182867656 182868104 -19460243 - L1MC3 LINE L1 -296 7489 7037 6962 56 33 1 chr4 182868104 182869621 -19458726 - L1PA7 LINE L1 -3 6151 4613 1268 202 19 0 chr4 182869625 182869887 -19458460 + L1MC3 LINE L1 7512 7778 -7 2237 111 0 0 chr4 182869968 182870274 -19458073 + AluY SINE Alu 1 306 -5 1547 236 12 52 chr4 182870756 182871197 -19457150 + L1M4 LINE L1 3839 4259 -1887 1980 134 7 3 chr4 182871197 182871489 -19456858 + AluSx SINE Alu 1 293 -19 1547 236 12 52 chr4 182871489 182871548 -19456799 + L1M4 LINE L1 4259 4319 -1827 1549 173 3 56 chr4 182871556 182871862 -19456485 + AluJo SINE Alu 1 290 -22 333 0 0 0 chr4 182871865 182871902 -19456445 + (TA)n Simple_repeat Simple_repeat 1 37 0 398 135 43 18 chr4 182871958 182872121 -19456226 + (TA)n Simple_repeat Simple_repeat 1 167 0 1165 199 48 3 chr4 182872195 182872487 -19455860 + L1M4 LINE L1 4387 4691 -1455 2560 138 26 7 chr4 182872494 182872958 -19455389 - L1MA5A LINE L1 -4 6293 5821 5706 222 57 24 chr4 182872996 182874256 -19454091 - L1M2c LINE L1 -5486 1303 2 5184 128 45 6 chr4 182874327 182874700 -19453647 + L1PA16 LINE L1 4913 5270 -896 2336 93 6 13 chr4 182874700 182875011 -19453336 + AluSx SINE Alu 1 309 -3 5184 128 45 6 chr4 182875011 182875844 -19452503 + L1PA16 LINE L1 5270 6157 -9 1322 233 11 8 chr4 182875912 182876285 -19452062 + L1M4 LINE L1 4873 5246 -900 993 299 72 6 chr4 182876549 182876897 -19451450 - MLT1J2 LTR MaLR -48 402 32 1861 173 0 3 chr4 182877050 182877357 -19450990 - AluSx SINE Alu -6 306 1 331 336 121 0 chr4 182877698 182877847 -19450500 + MIR3 SINE MIR 35 201 -7 1050 172 5 53 chr4 182878099 182878308 -19450039 + AluJo SINE Alu 83 281 -31 27 0 0 0 chr4 182878429 182878456 -19449891 + AT_rich Low_complexity Low_complexity 1 27 0 325 397 16 11 chr4 182878533 182878722 -19449625 + MIR3 SINE MIR 16 205 -3 307 73 36 0 chr4 182880817 182880872 -19447475 + (TA)n Simple_repeat Simple_repeat 2 58 0 3508 203 38 21 chr4 182880885 182881726 -19446621 + MER63C DNA MER1_type 76 930 0 333 325 158 30 chr4 182882326 182882549 -19445798 + MIR SINE MIR 8 250 -12 251 340 79 73 chr4 182883885 182884253 -19444094 - L2 LINE L2 -5 3267 2898 462 243 116 9 chr4 182884378 182884552 -19443795 - LTR50 LTR ERVL -163 632 357 327 314 220 21 chr4 182884701 182885137 -19443210 - L2 LINE L2 -683 2631 2109 243 218 0 0 chr4 182887256 182887311 -19441036 + (TA)n Simple_repeat Simple_repeat 1 55 0 200 35 35 0 chr4 182887814 182887843 -19440504 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 23 54 0 0 chr4 182889031 182889068 -19439279 + AT_rich Low_complexity Low_complexity 1 37 0 426 211 11 0 chr4 182889891 182889986 -19438361 - FLAM_C SINE Alu -5 138 43 1836 129 0 7 chr4 182891274 182891546 -19436801 + AluJb SINE Alu 30 299 -13 31 26 0 0 chr4 182893326 182893364 -19434983 + AT_rich Low_complexity Low_complexity 1 38 0 391 259 43 22 chr4 182893910 182894049 -19434298 + MLT1J2 LTR MaLR 11 152 -298 268 225 111 115 chr4 182894048 182894301 -19434046 + MLT1J1 LTR MaLR 192 443 -3 * 202 194 0 0 chr4 182894546 182894582 -19433765 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 228 294 92 9 chr4 182894976 182895085 -19433262 + MLT1K LTR MaLR 469 586 -2 223 359 16 0 chr4 182895090 182895154 -19433193 - L2 LINE L2 -44 3228 3164 301 338 36 22 chr4 182895671 182895810 -19432537 - MER5B DNA MER1_type -7 182 42 626 139 285 0 chr4 182895891 182896042 -19432305 + L1PA16 LINE L1 5971 6164 -2 28 29 0 0 chr4 182896048 182896083 -19432264 + AT_rich Low_complexity Low_complexity 1 35 0 513 167 0 0 chr4 182896882 182896984 -19431363 + (TG)n Simple_repeat Simple_repeat 1 102 0 237 211 155 0 chr4 182897289 182897360 -19430987 + MIR3 SINE MIR 97 178 -30 2071 113 0 3 chr4 182897979 182898308 -19430039 - AluSg SINE Alu 0 310 1 292 290 114 23 chr4 182898976 182899107 -19429240 + L2 LINE L2 3127 3269 -3 473 315 135 5 chr4 182900482 182900704 -19427643 - MIR SINE MIR 0 262 12 492 302 119 59 chr4 182901155 182901767 -19426580 + L2 LINE L2 2027 2675 -639 241 333 28 0 chr4 182901860 182901932 -19426415 - MIR3 SINE MIR -18 190 117 886 204 11 11 chr4 182902258 182902439 -19425908 - MER3 DNA MER1_type -27 182 2 29 90 0 0 chr4 182903000 182903078 -19425269 + AT_rich Low_complexity Low_complexity 1 78 0 377 157 29 0 chr4 182903165 182903235 -19425112 + MER116 DNA Mariner 5 76 -4 2176 116 0 3 chr4 182904959 182905270 -19423077 - AluSg SINE Alu 0 310 1 263 207 57 25 chr4 182905388 182905513 -19422834 + L1MC4 LINE L1 6878 7039 -806 337 171 65 49 chr4 182905814 182905937 -19422410 + L1MC4 LINE L1 7918 8042 0 2305 92 0 0 chr4 182906976 182907270 -19421077 + AluSg SINE Alu 1 294 -16 1880 124 10 14 chr4 182907643 182907934 -19420413 + AluSq SINE Alu 5 294 -19 21 0 0 0 chr4 182908896 182908917 -19419430 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 182909570 182909599 -19418748 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr4 182909746 182909773 -19418574 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr4 182910530 182910552 -19417795 + AT_rich Low_complexity Low_complexity 1 22 0 617 238 69 74 chr4 182911656 182911845 -19416502 - MIR SINE MIR -34 228 41 22 35 0 0 chr4 182913635 182913664 -19414683 + AT_rich Low_complexity Low_complexity 1 29 0 669 281 122 25 chr4 182914546 182914784 -19413563 + MIR SINE MIR 2 262 0 28 29 0 0 chr4 182915435 182915470 -19412877 + AT_rich Low_complexity Low_complexity 1 35 0 2512 44 3 0 chr4 182916395 182916693 -19411654 + AluY SINE Alu 2 300 -11 22 35 0 0 chr4 182917950 182917979 -19410368 + AT_rich Low_complexity Low_complexity 1 29 0 1971 273 65 44 chr4 182918932 182919792 -19408555 - L1ME3A LINE L1 -5 6165 5294 392 317 21 7 chr4 182919860 182920002 -19408345 - MIR SINE MIR -70 192 49 606 257 0 0 chr4 182921773 182921909 -19406438 + MIR SINE MIR 120 255 -7 223 273 82 82 chr4 182922058 182922241 -19406106 - MIR SINE MIR -14 248 66 201 147 0 0 chr4 182922381 182922415 -19405932 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 330 221 74 55 chr4 182922571 182922734 -19405613 + MER103 DNA DNA 1 166 0 22 35 0 0 chr4 182925676 182925705 -19402642 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 182925833 182925856 -19402491 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr4 182927399 182927428 -19400919 + AT_rich Low_complexity Low_complexity 1 29 0 26 64 0 0 chr4 182927525 182927572 -19400775 + AT_rich Low_complexity Low_complexity 1 47 0 24 0 0 0 chr4 182928204 182928228 -19400119 + AT_rich Low_complexity Low_complexity 1 24 0 187 107 0 0 chr4 182928674 182928702 -19399645 + MIR SINE MIR 226 253 -9 231 88 0 0 chr4 182929414 182929448 -19398899 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 258 175 65 32 chr4 182930259 182930413 -19397934 + (TTATA)n Simple_repeat Simple_repeat 5 163 0 627 247 203 10 chr4 182931438 182931734 -19396613 - L1MC4 LINE L1 -91 7951 7599 1355 189 30 32 chr4 182934709 182935047 -19393300 - MLT1A1 LTR MaLR -28 337 1 2392 127 25 0 chr4 182936550 182936905 -19391442 - THE1B LTR MaLR 0 364 1 227 366 37 0 chr4 182937024 182937106 -19391241 + MIR3 SINE MIR 70 154 -54 213 373 55 0 chr4 182937326 182937436 -19390911 - MIR3 SINE MIR -10 198 83 349 326 92 12 chr4 182937676 182937863 -19390484 + MIR SINE MIR 16 214 -48 213 154 0 0 chr4 182938080 182938119 -19390228 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 325 309 0 0 chr4 182939335 182939416 -19388931 + MLT1K LTR MaLR 33 113 -475 543 214 8 8 chr4 182939422 182939548 -19388799 + AluJb SINE Alu 7 132 -180 422 266 0 0 chr4 182939549 182939628 -19388719 + MLT1K LTR MaLR 103 181 -407 22 0 0 0 chr4 182939847 182939869 -19388478 + AT_rich Low_complexity Low_complexity 1 22 0 227 271 0 143 chr4 182940146 182940286 -19388061 - MIR SINE MIR -141 121 2 2147 84 35 0 chr4 182942054 182942338 -19386009 + AluSg SINE Alu 1 294 -16 234 184 20 0 chr4 182943996 182944045 -19384302 + L1MC4 LINE L1 7529 7578 -464 316 300 100 8 chr4 182944299 182944429 -19383918 - MIR SINE MIR -39 223 82 22 0 0 0 chr4 182944679 182944701 -19383646 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 182945034 182945059 -19383288 + AT_rich Low_complexity Low_complexity 1 25 0 2027 136 0 3 chr4 182945294 182945588 -19382759 - AluSx SINE Alu -19 293 1 220 322 0 0 chr4 182945743 182945802 -19382545 - MIR SINE MIR -171 91 33 319 246 198 36 chr4 182945951 182946118 -19382229 + L1M4 LINE L1 4943 5136 -1010 2062 97 0 85 chr4 182946320 182946649 -19381698 + AluSq SINE Alu 4 304 -9 234 0 0 0 chr4 182947213 182947239 -19381108 + (CA)n Simple_repeat Simple_repeat 2 27 0 236 167 26 39 chr4 182950181 182950259 -19378088 + (TTATA)n Simple_repeat Simple_repeat 3 79 0 2223 105 3 0 chr4 182950643 182950939 -19377408 + AluSx SINE Alu 2 298 -14 1341 114 114 4 chr4 182951155 182951400 -19376947 + MLT1B LTR MaLR 2 273 -117 738 121 0 32 chr4 182951409 182951533 -19376814 - MER41B LTR ERV1 0 635 516 1714 108 4 4 chr4 182951556 182951787 -19376560 + AluSq SINE Alu 40 270 -43 3261 129 6 20 chr4 182951799 182952161 -19376186 - MER41B LTR ERV1 -107 528 175 1730 82 12 0 chr4 182952161 182952404 -19375943 - L1PA7 LINE L1 0 6154 5909 3261 129 6 20 chr4 182952404 182952577 -19375770 - MER41B LTR ERV1 -460 175 1 674 171 17 0 chr4 182952577 182952686 -19375661 + MLT1B LTR MaLR 280 390 0 513 243 23 40 chr4 182953051 182953224 -19375123 - MIR SINE MIR -12 250 81 1566 115 0 0 chr4 182955078 182955295 -19373052 + AluSq SINE Alu 82 298 -15 21 82 0 0 chr4 182956046 182956095 -19372252 + AT_rich Low_complexity Low_complexity 1 49 0 236 140 180 0 chr4 182956485 182956535 -19371812 + MSTA LTR MaLR 370 428 0 2408 69 0 0 chr4 182957143 182957432 -19370915 + AluSc SINE Alu 1 289 -20 2190 86 7 33 chr4 182957457 182957760 -19370587 + AluSq SINE Alu 3 297 -16 542 246 68 16 chr4 182959008 182959256 -19369091 - L1MC5 LINE L1 -29 7932 7672 470 309 17 34 chr4 182959257 182959435 -19368912 - MIR SINE MIR -76 186 12 240 234 143 0 chr4 182960911 182960988 -19367359 + L2 LINE L2 3225 3312 -1 207 391 23 0 chr4 182961001 182961134 -19367213 - L2 LINE L2 -1029 2285 2150 451 250 114 66 chr4 182961215 182961443 -19366904 + L2 LINE L2 3075 3313 0 450 269 99 25 chr4 182962231 182962432 -19365915 - L2 LINE L2 -1 3312 3097 1274 214 96 109 chr4 182962434 182962902 -19365445 - LTR40b LTR ERVL 0 462 1 4940 103 81 29 chr4 182962931 182964022 -19364325 + L1PB1 LINE L1 5021 6147 -4 4796 103 6 1 chr4 182964063 182964755 -19363592 + L1PA13 LINE L1 5461 6155 -8 1147 217 30 7 chr4 182964779 182965091 -19363256 - HERVL40 LTR ERVL -26 5504 2791 510 326 22 6 chr4 182965368 182965546 -19362801 - HERVL40 LTR ERVL -870 4660 4480 760 271 65 36 chr4 182965674 182965980 -19362367 - HERVL40 LTR ERVL -1575 3955 3641 1523 196 56 39 chr4 182966015 182966469 -19361878 + MLT1B LTR MaLR 1 390 0 5104 260 44 28 chr4 182966469 182967960 -19360387 - HERVL40 LTR ERVL -1977 3553 2038 289 226 211 0 chr4 182967970 182968085 -19360262 - LTR40a LTR ERVL -230 232 115 391 257 86 0 chr4 182968105 182968210 -19360137 + L2 LINE L2 3193 3306 -7 671 310 70 4 chr4 182969123 182969365 -19358982 + MIR SINE MIR 3 260 -2 533 301 65 33 chr4 182971600 182971876 -19356471 - L1ME LINE L1 -4656 1605 1321 * 674 226 78 51 chr4 182971874 182972237 -19356110 - L1ME LINE L1 -4962 1118 750 21 57 0 0 chr4 182972289 182972324 -19356023 + AT_rich Low_complexity Low_complexity 1 35 0 1544 256 77 62 chr4 182972387 182973103 -19355244 - L1ME LINE L1 -5338 732 6 21 0 0 0 chr4 182973367 182973388 -19354959 + AT_rich Low_complexity Low_complexity 1 21 0 442 319 56 61 chr4 182973497 182973839 -19354508 + L3 LINE CR1 972 1311 -266 180 0 0 0 chr4 182974119 182974139 -19354208 + (TTG)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr4 182974445 182974474 -19353873 + AT_rich Low_complexity Low_complexity 1 29 0 244 336 56 14 chr4 182975643 182975786 -19352561 - L2 LINE L2 -934 2380 2232 298 345 14 0 chr4 182975903 182976017 -19352330 + MIR SINE MIR 20 141 -67 27 0 0 0 chr4 182979122 182979149 -19349198 + AT_rich Low_complexity Low_complexity 1 27 0 180 111 0 0 chr4 182979592 182979619 -19348728 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1773 180 0 3 chr4 182979975 182980258 -19348089 - AluJb SINE Alu -21 291 10 234 264 56 14 chr4 182981060 182981132 -19347215 + HsTC2c DNA Tc2 567 641 -88 707 171 27 41 chr4 182981271 182981417 -19346930 - MIR SINE MIR -54 208 65 189 129 0 0 chr4 182981415 182981446 -19346901 + L2 LINE L2 3280 3310 -3 * 388 277 68 92 chr4 182981464 182981713 -19346634 + HsTC2 DNA Tc2 648 890 -1008 327 130 174 11 chr4 182982309 182982403 -19345944 - L1MB7 LINE L1 -5 6161 6045 2162 224 28 28 chr4 182982434 182982938 -19345409 - LTR31 LTR ERV1 -15 604 101 2685 218 88 11 chr4 182983061 182983563 -19344784 - L1ME1 LINE L1 -185 6261 5666 2369 186 65 4 chr4 182983563 182984052 -19344295 + LTR53 LTR ERVL 1 519 0 2685 218 88 11 chr4 182984052 182984332 -19344015 - L1ME1 LINE L1 -780 5666 5409 1698 201 0 3 chr4 182984355 182984653 -19343694 + AluJo SINE Alu 1 297 -15 2009 240 77 72 chr4 182984653 182985196 -19343151 - L1ME1 LINE L1 -3589 2837 2298 318 67 0 0 chr4 182985196 182985241 -19343106 + (TG)n Simple_repeat Simple_repeat 2 46 0 2009 240 77 72 chr4 182985241 182985951 -19342396 - L1ME1 LINE L1 -4128 2298 1440 236 310 35 0 chr4 182985955 182986068 -19342279 + L1M4 LINE L1 4228 4344 -1802 325 239 54 11 chr4 182986080 182986172 -19342175 + L1MC4 LINE L1 6610 6705 -1337 462 264 96 84 chr4 182986216 182986810 -19341537 + L1M4 LINE L1 4419 5019 -1127 242 250 33 0 chr4 182986860 182986920 -19341427 + MER5A DNA MER1_type 128 189 0 23 33 0 0 chr4 182986996 182987026 -19341321 + AT_rich Low_complexity Low_complexity 1 30 0 284 214 24 24 chr4 182987075 182987159 -19341188 - MLT1K LTR MaLR -27 561 478 225 173 80 107 chr4 182987512 182987587 -19340760 + MLT1K LTR MaLR 439 511 -77 1483 217 3 17 chr4 182987924 182988224 -19340123 - AluJo SINE Alu -6 306 11 267 54 0 0 chr4 182988307 182988344 -19340003 + (CA)n Simple_repeat Simple_repeat 2 38 0 280 256 116 43 chr4 182989092 182989187 -19339160 - L1ME4a LINE L1 -103 6018 5931 2343 100 0 0 chr4 182989187 182989486 -19338861 + AluSx SINE Alu 1 299 -13 280 256 116 43 chr4 182989486 182989597 -19338750 - L1ME4a LINE L1 -190 5931 5797 188 88 176 0 chr4 182989608 182989642 -19338705 - L2 LINE L2 -9 3263 3224 610 224 0 0 chr4 182990550 182990666 -19337681 - FLAM_C SINE Alu -27 116 1 261 139 0 0 chr4 182995271 182995314 -19333033 + (TG)n Simple_repeat Simple_repeat 2 44 0 228 211 254 0 chr4 182995333 182995404 -19332943 + L2 LINE L2 3182 3270 -2 244 311 74 22 chr4 182997730 182997865 -19330482 - L1ME3A LINE L1 -13 6157 6016 180 0 0 0 chr4 182998055 182998075 -19330272 + (T)n Simple_repeat Simple_repeat 1 20 0 270 56 0 0 chr4 182998275 182998311 -19330036 + (GA)n Simple_repeat Simple_repeat 2 37 0 252 0 0 0 chr4 182998475 182998503 -19329844 + (TG)n Simple_repeat Simple_repeat 2 29 0 328 261 104 37 chr4 182999019 182999153 -19329194 + MIR3 SINE MIR 35 177 -31 23 0 0 0 chr4 183003574 183003597 -19324750 + AT_rich Low_complexity Low_complexity 1 23 0 1964 123 3 46 chr4 183003864 183004190 -19324157 - AluSq SINE Alu -1 312 1 180 290 215 21 chr4 183004383 183004476 -19323871 - L2 LINE L2 -2 3311 3201 647 205 0 8 chr4 183005537 183005659 -19322688 + FLAM_A SINE Alu 1 121 -12 255 319 37 15 chr4 183006742 183006877 -19321470 + L2 LINE L2 2353 2490 -824 282 95 0 0 chr4 183006979 183007021 -19321326 + (TCCCC)n Simple_repeat Simple_repeat 4 45 0 234 0 0 0 chr4 183007024 183007050 -19321297 + (TC)n Simple_repeat Simple_repeat 1 26 0 1792 147 0 24 chr4 183007068 183007361 -19320986 - AluJo SINE Alu -21 291 6 675 347 16 16 chr4 183007365 183007676 -19320671 + L2 LINE L2 2551 2861 -453 314 308 54 15 chr4 183007681 183007811 -19320536 - L2 LINE L2 -1 3312 3178 337 153 61 71 chr4 183008432 183008530 -19319817 - MER94 DNA DNA -35 99 3 217 254 68 0 chr4 183009319 183009378 -19318969 - L2 LINE L2 0 3313 3251 356 328 102 77 chr4 183009420 183009950 -19318397 + L2 LINE L2 2211 2753 -561 25 0 0 0 chr4 183010634 183010659 -19317688 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr4 183013094 183013123 -19315224 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 183013260 183013288 -19315059 + AT_rich Low_complexity Low_complexity 1 28 0 268 216 59 0 chr4 183013652 183013703 -19314644 + L2 LINE L2 3208 3261 -11 231 200 80 53 chr4 183014343 183014418 -19313929 - L2 LINE L2 -8 3305 3229 200 234 0 21 chr4 183014689 183014736 -19313611 + T-rich Low_complexity Low_complexity 4 49 0 1555 279 62 46 chr4 183014926 183015642 -19312705 + L1ME LINE L1 6 732 -5338 21 57 0 0 chr4 183015705 183015740 -19312607 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 183015976 183015997 -19312350 + AT_rich Low_complexity Low_complexity 1 21 0 6250 31 1 10 chr4 183016253 183016968 -19311379 + SVA Other Other 674 1382 -4 485 138 80 72 chr4 183016968 183017106 -19311241 + L1MC/D LINE L1 5356 5494 -850 * 1573 210 58 17 chr4 183017078 183017544 -19310803 + L1M4 LINE L1 4008 4492 -1654 846 312 70 14 chr4 183017560 183017973 -19310374 + L1M3a LINE L1 17 452 -5503 1898 134 13 23 chr4 183018170 183018476 -19309871 - AluJo SINE Alu -9 303 1 39 22 0 0 chr4 183019617 183019663 -19308684 + AT_rich Low_complexity Low_complexity 1 46 0 516 184 55 18 chr4 183020563 183020672 -19307675 - MER81 DNA DNA -1 113 1 202 180 0 40 chr4 183021364 183021414 -19306933 + (CATA)n Simple_repeat Simple_repeat 1 48 0 292 235 8 8 chr4 183021421 183021553 -19306794 + (TA)n Simple_repeat Simple_repeat 1 132 0 203 208 19 0 chr4 183021565 183021618 -19306729 + (TA)n Simple_repeat Simple_repeat 2 55 0 231 36 0 0 chr4 183021618 183021646 -19306701 + (CA)n Simple_repeat Simple_repeat 2 29 0 236 271 165 0 chr4 183022508 183022641 -19305706 - L1MC/D LINE L1 -1922 5886 5732 906 217 27 11 chr4 183022798 183022982 -19305365 + MER58A DNA MER1_type 1 187 -37 294 143 0 0 chr4 183022982 183023031 -19305316 + (A)n Simple_repeat Simple_repeat 1 49 0 274 365 65 0 chr4 183023114 183023221 -19305126 + L2 LINE L2 3150 3263 -9 281 268 158 16 chr4 183026411 183026538 -19301809 - MLT1L LTR MaLR -144 471 327 234 62 0 0 chr4 183026576 183026608 -19301739 + (CA)n Simple_repeat Simple_repeat 1 32 0 1443 169 142 0 chr4 183026648 183026908 -19301439 + AluSx SINE Alu 1 297 -5 340 276 51 93 chr4 183027149 183027504 -19300843 - ERVL LTR ERVL -594 5170 4831 646 256 101 61 chr4 183027574 183027871 -19300476 + MLT1L LTR MaLR 118 426 -189 336 136 68 17 chr4 183027951 183028010 -19300337 + MLT1L LTR MaLR 554 615 0 180 0 0 0 chr4 183028657 183028677 -19299670 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 31 58 0 0 chr4 183029408 183029460 -19298887 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr4 183030080 183030101 -19298246 + AT_rich Low_complexity Low_complexity 1 21 0 1318 202 0 13 chr4 183031712 183031950 -19296397 - AluJb SINE Alu -77 235 1 23 0 0 0 chr4 183031952 183031975 -19296372 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 183032563 183032586 -19295761 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 183033080 183033117 -19295230 + AT_rich Low_complexity Low_complexity 1 37 0 617 287 153 5 chr4 183034031 183034247 -19294100 - MIR SINE MIR 0 262 15 379 314 24 41 chr4 183034729 183035067 -19293280 + L1MEd LINE L1 1201 1532 -4884 376 243 32 110 chr4 183035068 183035203 -19293144 + L1MEd LINE L1 1391 1535 -1252 1821 124 0 64 chr4 183035203 183035530 -19292817 + AluSx SINE Alu 5 312 0 376 243 32 110 chr4 183035530 183035626 -19292721 + L1MEd LINE L1 1535 1849 -938 258 249 83 47 chr4 183035664 183035826 -19292521 + L1M1 LINE L1 2835 3030 -4535 1061 205 39 77 chr4 183036052 183036174 -19292173 + MER33 DNA MER1_type 1 126 -2459 762 230 6 0 chr4 183036174 183036335 -19292012 - FRAM SINE Alu -4 162 1 1061 205 39 77 chr4 183036335 183036549 -19291798 + MER33 DNA MER1_type 126 324 0 391 404 25 4 chr4 183037593 183037833 -19290514 + L2 LINE L2 2807 3051 -221 205 171 0 0 chr4 183037986 183038021 -19290326 + (CATA)n Simple_repeat Simple_repeat 4 38 0 21 57 0 0 chr4 183039241 183039276 -19289071 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 183039538 183039561 -19288786 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 183039664 183039688 -19288659 + AT_rich Low_complexity Low_complexity 1 24 0 26 74 0 0 chr4 183040420 183040474 -19287873 + AT_rich Low_complexity Low_complexity 1 54 0 42 0 0 0 chr4 183041045 183041087 -19287260 + AT_rich Low_complexity Low_complexity 1 42 0 193 347 56 21 chr4 183043689 183043833 -19284514 + L2 LINE L2 1493 1641 -1673 302 336 30 8 chr4 183044000 183044131 -19284216 + L2 LINE L2 3168 3301 -12 2110 90 0 55 chr4 183044149 183044460 -19283887 - AluSx SINE Alu -18 294 1 326 183 108 32 chr4 183045149 183045242 -19283105 - FRAM SINE Alu 0 166 67 217 120 0 80 chr4 183048699 183048749 -19279598 + (CAAAAA)n Simple_repeat Simple_repeat 5 50 0 2696 136 54 147 chr4 183049273 183050153 -19278194 + L1MC1 LINE L1 5175 5970 -363 24 0 0 0 chr4 183050391 183050415 -19277932 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 183050710 183050735 -19277612 + AT_rich Low_complexity Low_complexity 1 25 0 616 301 72 48 chr4 183051105 183051354 -19276993 + MIR SINE MIR 8 262 0 1716 159 19 35 chr4 183051734 183052048 -19276299 + AluJo SINE Alu 1 309 -3 2721 202 60 22 chr4 183052551 183052889 -19275458 + MER82 DNA MER2_type 1 325 -328 2219 45 3 18 chr4 183052889 183053204 -19275143 - AluY SINE Alu 0 311 1 2721 202 60 22 chr4 183053204 183053493 -19274854 + MER82 DNA MER2_type 325 653 0 1991 113 24 0 chr4 183053872 183054165 -19274182 + AluSx SINE Alu 1 300 -12 1883 78 12 4 chr4 183055089 183055346 -19273001 - AluSq SINE Alu -15 298 40 352 300 97 70 chr4 183055534 183055791 -19272556 + HAL1 LINE L1 22 285 -2222 317 255 29 39 chr4 183055851 183055953 -19272394 + MIR SINE MIR 104 204 -58 29 60 0 0 chr4 183056308 183056358 -19271989 + AT_rich Low_complexity Low_complexity 1 50 0 429 192 96 21 chr4 183056549 183056663 -19271684 + L1MC4 LINE L1 6854 7024 -813 1063 132 83 78 chr4 183056663 183056867 -19271480 + MER2 DNA MER2_type 2 206 -139 2460 214 86 68 chr4 183056982 183057487 -19270860 + L1MC4 LINE L1 7024 7518 -524 1470 194 54 4 chr4 183057487 183057766 -19270581 + AluJo SINE Alu 1 293 -19 2460 214 86 68 chr4 183057766 183058236 -19270111 + L1MC4 LINE L1 7518 8017 -25 356 319 0 25 chr4 183058373 183058492 -19269855 - MIR SINE MIR -131 131 16 204 278 56 14 chr4 183058727 183058799 -19269548 + MIR SINE MIR 110 184 -78 345 172 31 16 chr4 183059128 183059192 -19269155 + L2 LINE L2 3207 3271 -1 1252 382 20 13 chr4 183059229 183059682 -19268665 + L1M4 LINE L1 4948 5403 -743 1287 206 74 13 chr4 183059689 183060000 -19268347 + L1MD2 LINE L1 6008 6337 -22 284 154 17 14 chr4 183060049 183060119 -19268228 + L1ME1 LINE L1 6107 6184 0 2160 103 0 0 chr4 183060722 183061003 -19267344 - AluSg SINE Alu -22 288 8 29 0 0 0 chr4 183061019 183061048 -19267299 + AT_rich Low_complexity Low_complexity 1 29 0 382 123 0 0 chr4 183061052 183061117 -19267230 - AluSc SINE Alu 0 299 235 320 310 90 7 chr4 183061289 183061434 -19266913 + MIR SINE MIR 50 206 -56 460 324 50 6 chr4 183063346 183063525 -19264822 + MIR3 SINE MIR 16 202 -6 4654 195 45 27 chr4 183063525 183065533 -19262814 + L1MB3 LINE L1 4138 6182 -1 1380 201 32 14 chr4 183065895 183066173 -19262174 + AluJo SINE Alu 7 289 -23 24 53 0 0 chr4 183066329 183066367 -19261980 + AT_rich Low_complexity Low_complexity 1 38 0 567 123 75 19 chr4 183066801 183066907 -19261440 + MLT1F1 LTR MaLR 453 564 -3 347 299 27 7 chr4 183071293 183071440 -19256907 - L1ME LINE L1 -478 5692 5543 2251 184 37 19 chr4 183072594 183073109 -19255238 - L1MA10 LINE L1 -1 6569 6046 7528 224 60 56 chr4 183073112 183074326 -19254021 - L1MA10 LINE L1 -1863 4519 3311 2036 101 0 63 chr4 183074326 183074642 -19253705 - AluSc SINE Alu -13 296 1 7528 224 60 56 chr4 183074642 183076271 -19252076 - L1MA10 LINE L1 -3071 3311 1690 1891 159 13 3 chr4 183076271 183076580 -19251767 - AluJb SINE Alu 0 312 1 7528 224 60 56 chr4 183076580 183077281 -19251066 - L1MA10 LINE L1 -4692 1690 953 195 42 0 0 chr4 183077281 183077305 -19251042 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7528 224 60 56 chr4 183077305 183077354 -19250993 - L1MA10 LINE L1 -5429 953 906 3561 97 36 14 chr4 183077461 183078040 -19250307 - SVA Other Other -518 868 277 370 162 15 0 chr4 183078040 183078127 -19250220 - L1ME LINE L1 -802 5364 5273 718 205 47 16 chr4 183078130 183078320 -19250027 - L1ME LINE L1 -2148 3998 3803 1023 273 132 14 chr4 183078335 183078819 -19249528 - HAL1 LINE L1 -897 1610 1070 * 2095 256 32 6 chr4 183078817 183079449 -19248898 - L1ME LINE L1 -3316 2830 2183 814 297 88 86 chr4 183079480 183079934 -19248413 - HAL1 LINE L1 -1471 1036 584 306 0 0 0 chr4 183079934 183079968 -19248379 + (TG)n Simple_repeat Simple_repeat 2 35 0 814 297 88 86 chr4 183079968 183080453 -19247894 - HAL1 LINE L1 -1923 584 92 2752 10 0 0 chr4 183080453 183080757 -19247590 - AluYa5 SINE Alu -7 304 1 814 297 88 86 chr4 183080757 183080843 -19247504 - HAL1 LINE L1 -2415 92 8 529 242 63 37 chr4 183082175 183082365 -19245982 + L2 LINE L2 3119 3313 0 195 308 39 13 chr4 183083873 183083951 -19244396 + MIR SINE MIR 119 198 -64 2112 91 10 14 chr4 183085066 183085362 -19242985 - AluSc SINE Alu -14 295 1 241 248 119 50 chr4 183085554 183085655 -19242692 - MIR SINE MIR -64 144 37 26 0 0 0 chr4 183087316 183087342 -19241005 + AT_rich Low_complexity Low_complexity 1 26 0 2039 131 0 0 chr4 183087532 183087815 -19240532 + AluSx SINE Alu 7 289 -23 220 331 94 12 chr4 183088013 183088173 -19240174 + L2 LINE L2 3131 3303 -10 430 204 234 18 chr4 183088772 183088939 -19239408 - L1MC5 LINE L1 -97 7864 7662 28 71 0 0 chr4 183088961 183089017 -19239330 + AT_rich Low_complexity Low_complexity 1 56 0 6434 159 31 34 chr4 183089069 183090990 -19237357 + L1PA13 LINE L1 4243 6162 -1 281 347 89 16 chr4 183091378 183091502 -19236845 - L2 LINE L2 -8 3264 3132 314 281 253 14 chr4 183091940 183092086 -19236261 - MIR SINE MIR -65 197 17 27 0 0 0 chr4 183093007 183093034 -19235313 + AT_rich Low_complexity Low_complexity 1 27 0 790 256 67 17 chr4 183093938 183094176 -19234171 - MIR SINE MIR 0 262 13 200 256 45 120 chr4 183094361 183094494 -19233853 + L2 LINE L2 3191 3313 0 1699 131 3 92 chr4 183094621 183094956 -19233391 - AluJo SINE Alu -5 307 3 310 193 102 23 chr4 183095455 183095543 -19232804 - MER90 LTR ERV1 -155 459 365 444 268 64 18 chr4 183095571 183095805 -19232542 - MER90 LTR ERV1 -325 289 5 346 362 75 42 chr4 183095984 183096440 -19231907 - L2 LINE L2 -562 2752 2282 1861 33 0 0 chr4 183098120 183098335 -19230012 + AluY SINE Alu 94 308 -3 24 0 0 0 chr4 183098357 183098381 -19229966 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 183099351 183099373 -19228974 + AT_rich Low_complexity Low_complexity 1 22 0 25 65 0 0 chr4 183099753 183099799 -19228548 + AT_rich Low_complexity Low_complexity 1 46 0 1783 112 4 0 chr4 183100548 183100789 -19227558 - AluSp SINE Alu -30 283 42 21 36 0 0 chr4 183101066 183101094 -19227253 + AT_rich Low_complexity Low_complexity 1 28 0 1489 185 10 13 chr4 183101275 183101577 -19226770 - AluSx SINE Alu -11 301 1 21 0 0 0 chr4 183102764 183102785 -19225562 + AT_rich Low_complexity Low_complexity 1 21 0 182 330 179 9 chr4 183103006 183103112 -19225235 - L2 LINE L2 -235 3037 2914 285 29 0 0 chr4 183103154 183103188 -19225159 + (TG)n Simple_repeat Simple_repeat 1 34 0 510 315 41 20 chr4 183103245 183103442 -19224905 - L2 LINE L2 -576 2738 2538 261 264 0 0 chr4 183103553 183103606 -19224741 + MER5A DNA MER1_type 45 97 -92 328 342 33 33 chr4 183103867 183104107 -19224240 - HsTC2 DNA Tc2 -1182 716 477 21 0 0 0 chr4 183104595 183104616 -19223731 + AT_rich Low_complexity Low_complexity 1 21 0 320 339 23 39 chr4 183105015 183105145 -19223202 + L2 LINE L2 3161 3288 -25 1363 103 0 0 chr4 183155664 183155839 -19172508 - AluSq SINE Alu -84 229 55 281 143 82 0 chr4 183156008 183156057 -19172290 - MER63 DNA MER1_type -154 682 4 214 313 38 38 chr4 183156227 183156307 -19172040 + L2 LINE L2 2993 3072 -200 1274 133 0 0 chr4 183156368 183156571 -19171776 + L1PB1 LINE L1 5949 6151 0 1636 115 0 0 chr4 183156811 183157054 -19171293 - MER4A-int LTR ERV1 -1200 3815 3573 2158 137 0 0 chr4 183157054 183157354 -19170993 + AluSq SINE Alu 1 300 -13 478 129 0 0 chr4 183157366 183157436 -19170911 + MLT2A1 LTR ERVL 1 70 -374 * 810 102 0 88 chr4 183157433 183157580 -19170767 + MLT2A1 LTR ERVL 311 444 0 7141 108 37 16 chr4 183157580 183158769 -19169578 - MER4A-int LTR ERV1 -1548 5050 3837 1410 175 38 51 chr4 183158763 183158827 -19169520 - MER4A-int LTR ERV1 -2912 3686 3623 * 1899 162 3 13 chr4 183158827 183159141 -19169206 + AluSx SINE Alu 1 311 -1 1410 175 38 51 chr4 183159141 183159471 -19168876 - MER4A-int LTR ERV1 -2975 3623 3297 1306 58 19 10 chr4 183159493 183159699 -19168648 - PABL_A-int LTR ERV1 -2946 2069 1862 1329 139 9 5 chr4 183159699 183159915 -19168432 + LTR8 LTR ERV1 1 217 -474 10763 124 94 77 chr4 183159915 183162392 -19165955 - MER4A-int LTR ERV1 -4077 2521 1 1963 112 6 19 chr4 183162395 183162744 -19165603 - MER4A LTR ERV1 0 664 262 700 91 0 10 chr4 183162744 183162843 -19165504 - MER4A LTR ERV1 -566 98 1 222 320 21 10 chr4 183163191 183163288 -19165059 - L2 LINE L2 -1001 2313 2216 2470 74 0 0 chr4 183163623 183163922 -19164425 - AluSc SINE Alu -10 299 1 269 292 115 0 chr4 183164090 183164186 -19164161 - L2 LINE L2 -19 3294 3188 1638 171 9 38 chr4 183164963 183165278 -19163069 + AluJo SINE Alu 1 306 -6 2005 190 92 5 chr4 183165469 183165891 -19162456 - LOR1b LTR ERV1 -2 459 1 1144 209 39 33 chr4 183166576 183166882 -19161465 + L1ME2 LINE L1 4891 5198 -948 2410 230 42 41 chr4 183166914 183167696 -19160651 + L1ME2 LINE L1 5333 6115 -49 180 0 0 0 chr4 183168831 183168851 -19159496 + (A)n Simple_repeat Simple_repeat 1 20 0 1796 148 50 0 chr4 183172218 183172501 -19155846 - AluSx SINE Alu -15 297 1 610 133 0 17 chr4 183173157 183173277 -19155070 + (TA)n Simple_repeat Simple_repeat 1 118 0 282 56 0 0 chr4 183173281 183173317 -19155030 + (TG)n Simple_repeat Simple_repeat 1 36 0 675 255 59 10 chr4 183173319 183173517 -19154830 + MLT1E2 LTR MaLR 297 526 -100 667 203 14 7 chr4 183173517 183173665 -19154682 + MER34 LTR ERV1 4 152 -390 379 316 23 0 chr4 183174426 183174597 -19153750 - L1M4 LINE L1 -2685 3461 3287 1857 159 62 45 chr4 183174597 183174938 -19153409 - MSTA LTR MaLR 0 428 77 2327 116 62 0 chr4 183174938 183175293 -19153054 - MER51B LTR ERV1 0 377 1 1857 159 62 45 chr4 183175293 183175372 -19152975 - MSTA LTR MaLR -351 77 1 1587 191 7 7 chr4 183175402 183175685 -19152662 - AluJo SINE Alu -12 300 18 591 338 46 29 chr4 183175706 183176162 -19152185 - L1MEc LINE L1 -5828 568 105 22 56 0 0 chr4 183177033 183177069 -19151278 + AT_rich Low_complexity Low_complexity 1 36 0 329 206 6 42 chr4 183177455 183177620 -19150727 + GA-rich Low_complexity Low_complexity 2 160 0 286 58 92 11 chr4 183177902 183177989 -19150358 + (TATAA)n Simple_repeat Simple_repeat 4 97 0 2850 71 3 0 chr4 183178241 183178595 -19149752 + THE1A LTR MaLR 1 355 0 7145 104 26 3 chr4 183178595 183179598 -19148749 + THE1A-int LTR MaLR 1 1026 -554 2282 100 7 0 chr4 183179601 183179911 -19148436 + THE1A-int LTR MaLR 1269 1580 0 1583 84 40 0 chr4 183179911 183180137 -19148210 + THE1A LTR MaLR 1 235 -120 456 207 0 98 chr4 183180237 183180326 -19148021 - L1M4 LINE L1 -846 5300 5233 2296 79 13 25 chr4 183180326 183180643 -19147704 + AluSp SINE Alu 1 313 0 456 207 0 98 chr4 183180643 183180717 -19147630 - L1M4 LINE L1 -913 5233 5153 1590 239 41 35 chr4 183181835 183182299 -19146048 - MLT1C LTR MaLR 0 467 1 1727 166 34 7 chr4 183182763 183183059 -19145288 + AluSx SINE Alu 1 304 -8 469 194 20 0 chr4 183183074 183183172 -19145175 - Charlie1 DNA MER1_type -7 2754 2655 615 347 105 25 chr4 183183926 183184373 -19143974 - L3 LINE CR1 -40 1537 1055 314 217 38 38 chr4 183186113 183186270 -19142077 + (CATATA)n Simple_repeat Simple_repeat 2 158 0 2132 171 19 19 chr4 183188100 183188521 -19139826 - L1MC1 LINE L1 -82 6251 5831 5909 144 28 5 chr4 183188986 183190849 -19137498 + L1PA15 LINE L1 4263 6163 -2 1402 166 73 120 chr4 183191310 183191719 -19136628 + MER47B DNA MER2_type 29 418 0 21 0 0 0 chr4 183192101 183192122 -19136225 + AT_rich Low_complexity Low_complexity 1 21 0 1877 158 23 0 chr4 183192411 183192715 -19135632 + AluJb SINE Alu 1 311 -1 1332 191 103 12 chr4 183192744 183193074 -19135273 - MER67C LTR ERV1 0 710 351 252 316 0 0 chr4 183193102 183193181 -19135166 - MER67B LTR ERV1 -256 405 327 * 991 193 109 5 chr4 183193175 183193367 -19134980 + MER21B LTR ERV1 279 490 -373 533 195 35 0 chr4 183193371 183193484 -19134863 - MER67C LTR ERV1 -474 236 120 457 174 22 0 chr4 183193676 183193768 -19134579 - L1MA10 LINE L1 -8 6326 6233 839 116 0 0 chr4 183193835 183193956 -19134391 + MSTA LTR MaLR 1 121 -307 1474 192 45 0 chr4 183194217 183194504 -19133843 + MSTA LTR MaLR 129 428 0 627 261 76 32 chr4 183194688 183195008 -19133339 + LTR35 LTR ERV1 350 618 0 2811 236 32 30 chr4 183195066 183195945 -19132402 - L1M4 LINE L1 -792 5354 4474 326 260 135 10 chr4 183196248 183196352 -19131995 - L2 LINE L2 -511 2803 2687 2110 110 3 16 chr4 183196996 183197304 -19131043 - AluSx SINE Alu -8 304 1 2148 95 0 37 chr4 183197812 183198133 -19130214 - AluSx SINE Alu 0 310 1 2189 184 43 24 chr4 183200207 183200625 -19127722 + MSTB LTR MaLR 1 426 0 2308 136 11 3 chr4 183200649 183201009 -19127338 + THE1B LTR MaLR 1 363 -1 237 311 10 0 chr4 183201341 183201444 -19126903 - HAL1 LINE L1 -106 2401 2298 264 59 0 0 chr4 183201444 183201478 -19126869 + (TG)n Simple_repeat Simple_repeat 2 35 0 290 279 16 74 chr4 183201540 183201730 -19126617 - HAL1 LINE L1 -418 2089 1911 575 269 16 12 chr4 183201845 183202188 -19126159 + L1ME3A LINE L1 5122 5466 -698 511 170 10 0 chr4 183202188 183202288 -19126059 + MER53 DNA DNA 1 101 -88 1652 260 98 35 chr4 183202333 183202998 -19125349 + L1ME3A LINE L1 5459 6165 -5 444 320 99 5 chr4 183203897 183204119 -19124228 + MIR SINE MIR 14 256 -6 433 267 15 37 chr4 183204656 183204791 -19123556 + MIR SINE MIR 20 151 -111 908 207 52 5 chr4 183205878 183206071 -19122276 + L1PA16 LINE L1 5965 6166 0 288 238 48 48 chr4 183206466 183206592 -19121755 - MIR SINE MIR 0 262 137 1184 218 44 57 chr4 183206608 183206975 -19121372 - MER31-int LTR ERV1 -1229 3707 3346 2092 112 3 16 chr4 183207096 183207408 -19120939 - AluSg SINE Alu -2 308 1 397 117 52 19 chr4 183207860 183208014 -19120333 + (TA)n Simple_repeat Simple_repeat 2 160 0 290 115 19 0 chr4 183208123 183208175 -19120172 + (TA)n Simple_repeat Simple_repeat 2 54 0 1734 178 3 28 chr4 183208175 183208495 -19119852 - AluJo SINE Alu 0 312 1 23 54 0 0 chr4 183209366 183209403 -19118944 + AT_rich Low_complexity Low_complexity 1 37 0 5789 153 23 20 chr4 183210905 183212261 -19116086 - L1MA9 LINE L1 0 6312 4948 572 114 0 0 chr4 183212261 183212340 -19116007 - AluSg1 SINE Alu -227 82 4 680 222 7 0 chr4 183212342 183212486 -19115861 - L1MA9 LINE L1 -1189 4957 4813 281 87 0 22 chr4 183212577 183212623 -19115724 + MADE1 DNA Mariner 34 78 -2 395 238 10 10 chr4 183212638 183212739 -19115608 - MLT1K LTR MaLR -2 586 486 1360 226 94 129 chr4 183215325 183215875 -19112472 - MLT1E LTR MaLR 0 593 12 32 26 0 0 chr4 183216969 183217008 -19111339 + AT_rich Low_complexity Low_complexity 1 39 0 292 272 123 9 chr4 183217097 183217211 -19111136 + MIR SINE MIR 132 258 -4 1697 165 7 25 chr4 183217234 183217519 -19110828 - AluJo SINE Alu -26 286 7 296 358 93 36 chr4 183217546 183217932 -19110415 + L2 LINE L2 2435 2842 -472 320 340 71 86 chr4 183217987 183218311 -19110036 + L2 LINE L2 2949 3267 -5 1244 215 63 11 chr4 183218330 183218600 -19109747 + AluJo SINE Alu 10 293 -19 2292 115 0 0 chr4 183218850 183219162 -19109185 - AluSx SINE Alu 0 312 1 276 342 135 32 chr4 183221290 183221571 -19106776 - L3 LINE CR1 -18 1559 1250 292 368 42 6 chr4 183221614 183221780 -19106567 - L3 LINE CR1 -453 1124 953 * 818 335 78 24 chr4 183221779 183222239 -19106108 - L2 LINE L2 0 3313 2829 2711 116 32 11 chr4 183222338 183222779 -19105568 - Tigger2 DNA MER2_type -2 2716 2267 393 188 0 0 chr4 183222763 183222832 -19105515 - Tigger2 DNA MER2_type -2649 69 1 * 590 325 133 56 chr4 183222832 183223016 -19105331 - L1MEd LINE L1 -4183 2939 2771 1926 148 14 0 chr4 183223016 183223299 -19105048 - AluSx SINE Alu -18 294 8 590 325 133 56 chr4 183223299 183224038 -19104309 - L1MEd LINE L1 -4351 2771 1945 778 131 0 22 chr4 183224039 183224176 -19104171 - AluSx SINE Alu 0 312 179 931 120 0 0 chr4 183224176 183224301 -19104046 - AluSx SINE Alu -187 125 1 390 285 77 75 chr4 183224301 183224554 -19103793 - L1MEd LINE L1 -5025 1906 1497 309 289 66 0 chr4 183224557 183224723 -19103624 - L1MEd LINE L1 -4954 1469 1293 1139 240 49 80 chr4 183225071 183225768 -19102579 - L1M4 LINE L1 -2098 4048 3374 270 276 77 64 chr4 183225880 183226036 -19102311 + Charlie2b DNA MER1_type 1651 1808 -974 * 854 319 143 3 chr4 183225996 183226353 -19101994 - LTR33 LTR ERVL -12 509 103 1208 228 114 7 chr4 183226426 183226848 -19101499 + Charlie2b DNA MER1_type 1820 2206 -576 13425 209 31 33 chr4 183226929 183229294 -19099053 + L1PB3 LINE L1 1 2370 -3841 2086 119 24 0 chr4 183229294 183229587 -19098760 - AluSx SINE Alu -12 300 1 13425 209 31 33 chr4 183229587 183230762 -19097585 + L1PB3 LINE L1 2370 3546 -2665 2204 102 26 10 chr4 183230762 183231067 -19097280 + AluSg SINE Alu 1 310 0 13425 209 31 33 chr4 183231067 183231438 -19096909 + L1PB3 LINE L1 3546 3916 -2295 1617 170 0 18 chr4 183231438 183231721 -19096626 + AluJb SINE Alu 1 278 -34 393 22 0 0 chr4 183231725 183231771 -19096576 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 13425 209 31 33 chr4 183231771 183232513 -19095834 + L1PB3 LINE L1 3919 4661 -1550 1290 164 180 0 chr4 183232513 183232601 -19095746 + AluJo SINE Alu 1 72 -240 501 47 0 0 chr4 183232601 183232665 -19095682 + (CTA)n Simple_repeat Simple_repeat 1 64 0 1290 164 180 0 chr4 183232665 183232820 -19095527 + AluJo SINE Alu 72 288 -24 13425 209 31 33 chr4 183232820 183234694 -19093653 + L1PB3 LINE L1 4661 5842 -369 266 73 24 0 chr4 183234694 183234735 -19093612 + (TA)n Simple_repeat Simple_repeat 1 42 0 13425 209 31 33 chr4 183234735 183235098 -19093249 + L1PB3 LINE L1 5842 6204 -7 377 207 264 12 chr4 183235111 183235516 -19092831 + Charlie2b DNA MER1_type 2215 2721 -61 563 295 52 16 chr4 183235823 183236016 -19092331 + MLT1J2 LTR MaLR 251 450 0 2359 39 3 3 chr4 183236711 183237037 -19091310 + AluY SINE Alu 1 326 0 1161 140 0 0 chr4 183237037 183237215 -19091132 + AluSg/x SINE Alu 126 303 -9 566 276 165 32 chr4 183237894 183238209 -19090138 + MLT1J2 LTR MaLR 57 413 -37 22 70 0 0 chr4 183238358 183238401 -19089946 + AT_rich Low_complexity Low_complexity 1 43 0 184 167 0 48 chr4 183238428 183238470 -19089877 - L3 LINE CR1 -737 840 801 2149 117 3 3 chr4 183238595 183238894 -19089453 + AluSc SINE Alu 1 299 -10 4196 194 30 23 chr4 183238894 183239838 -19088509 + L1MA9 LINE L1 5321 6274 -38 2037 138 0 0 chr4 183239996 183240278 -19088069 - AluSx SINE Alu -30 282 1 2240 109 0 22 chr4 183240472 183240783 -19087564 - AluSp SINE Alu -6 307 4 2259 106 0 0 chr4 183241724 183242026 -19086321 - AluSx SINE Alu -10 302 1 248 290 30 10 chr4 183243025 183243125 -19085222 + L1ME LINE L1 5333 5434 -808 269 267 0 27 chr4 183243171 183243246 -19085101 + L2 LINE L2 3203 3275 -38 338 333 90 32 chr4 183243396 183243585 -19084762 + L1ME LINE L1 5620 5819 -302 24 32 0 0 chr4 183243699 183243730 -19084617 + AT_rich Low_complexity Low_complexity 1 31 0 204 250 0 25 chr4 183245372 183245452 -19082895 + (TAA)n Simple_repeat Simple_repeat 2 79 0 294 280 70 20 chr4 183246011 183246111 -19082236 - MLT1L LTR MaLR 0 615 511 445 266 31 102 chr4 183246137 183246363 -19081984 + MIR SINE MIR 50 259 -3 445 259 7 52 chr4 183246697 183246832 -19081515 + MIR SINE MIR 36 164 -98 21 0 0 0 chr4 183249054 183249075 -19079272 + AT_rich Low_complexity Low_complexity 1 21 0 5659 56 9 4 chr4 183251327 183252027 -19076320 + SVA Other Other 681 1383 -3 736 233 149 98 chr4 183252127 183252669 -19075678 - LTR50 LTR ERVL 0 795 226 649 299 164 33 chr4 183252992 183253621 -19074726 + L1ME4a LINE L1 5402 6112 -9 1630 172 3 47 chr4 183254745 183255065 -19073282 + AluSx SINE Alu 7 312 0 248 319 0 29 chr4 183255953 183256022 -19072325 + L2 LINE L2 3246 3312 -1 1619 175 57 27 chr4 183256475 183256846 -19071501 + L1MC3 LINE L1 7403 7784 -1 621 100 0 0 chr4 183256918 183257008 -19071339 - LTR12 LTR ERV1 0 714 625 296 195 50 78 chr4 183257008 183257126 -19071221 - LTR30 LTR ERV1 -71 723 378 1010 124 297 10 chr4 183257126 183257335 -19071012 - LTR12 LTR ERV1 -444 270 2 225 94 0 0 chr4 183257361 183257393 -19070954 + (CA)n Simple_repeat Simple_repeat 1 32 0 237 108 0 0 chr4 183258682 183258719 -19069628 + (TA)n Simple_repeat Simple_repeat 2 38 0 245 32 0 0 chr4 183259012 183259043 -19069304 - MADE1 DNA Mariner -49 31 1 182 422 0 0 chr4 183259149 183259213 -19069134 + L2 LINE L2 2978 3041 -231 2085 125 0 0 chr4 183259303 183259590 -19068757 - AluSg SINE Alu -23 287 1 288 192 0 0 chr4 183259635 183259687 -19068660 + LTR30 LTR ERV1 1 52 -670 1460 117 171 150 chr4 183259699 183260132 -19068215 + LTR12 LTR ERV1 72 480 -234 647 208 71 6 chr4 183260268 183260321 -19068026 + L1MC2 LINE L1 5862 5910 -434 2671 115 55 14 chr4 183260321 183260755 -19067592 - LTR47A LTR ERVL 0 452 1 647 208 71 6 chr4 183260755 183260869 -19067478 + L1MC2 LINE L1 5910 6040 -304 1951 143 40 57 chr4 183260869 183261186 -19067161 - THE1B LTR MaLR 0 364 52 2060 208 72 8 chr4 183261186 183261661 -19066686 + LTR22 LTR ERVK 1 505 -4 1951 143 40 57 chr4 183261661 183261713 -19066634 - THE1B LTR MaLR -312 52 1 1288 206 18 18 chr4 183261716 183261998 -19066349 + L1MC2 LINE L1 6039 6320 -24 235 316 86 40 chr4 183262586 183262738 -19065609 - L2 LINE L2 -6 3307 3149 1666 112 25 40 chr4 183263645 183263922 -19064425 - THE1B LTR MaLR 0 364 92 8820 130 40 7 chr4 183263932 183265285 -19063062 - THE1B-int LTR MaLR -182 1398 1 1814 164 33 33 chr4 183265285 183265645 -19062702 - THE1B LTR MaLR 0 364 5 1842 138 67 33 chr4 183265778 183266139 -19062208 + THE1C LTR MaLR 3 375 0 1839 141 78 228 chr4 183267247 183267883 -19060464 - L1MC1 LINE L1 0 6333 5857 2062 128 34 0 chr4 183267883 183268181 -19060166 - AluSc SINE Alu -1 308 1 1839 141 78 228 chr4 183268181 183268388 -19059959 - L1MC1 LINE L1 -476 5857 5621 4421 134 129 54 chr4 183268390 183269417 -19058930 - L1MCa LINE L1 -4215 2211 1107 402 286 64 79 chr4 183269672 183269803 -19058544 + L2 LINE L2 2486 2613 -701 2097 57 0 0 chr4 183269803 183270048 -19058299 - AluY SINE Alu -66 245 1 402 286 64 79 chr4 183270048 183270182 -19058165 + L2 LINE L2 2613 2747 -567 321 301 102 6 chr4 183270699 183270831 -19057516 + MIR SINE MIR 14 169 -93 207 0 0 0 chr4 183270831 183270854 -19057493 + (TAA)n Simple_repeat Simple_repeat 3 25 0 321 301 102 6 chr4 183270854 183270897 -19057450 + MIR SINE MIR 169 206 -56 575 330 39 17 chr4 183271299 183271529 -19056818 - MIR SINE MIR -16 246 12 236 229 71 0 chr4 183274001 183274071 -19054276 - L1MA10 LINE L1 -3 6331 6257 894 221 4 30 chr4 183274075 183274306 -19054041 + AluJo SINE Alu 84 308 -4 811 276 55 32 chr4 183274309 183274711 -19053636 - L1ME1 LINE L1 -50 6116 5706 390 276 86 13 chr4 183274841 183275073 -19053274 - L1MC5 LINE L1 -61 7900 7652 523 252 157 76 chr4 183275114 183275317 -19053030 + L1ME LINE L1 5350 5588 -533 1576 179 6 22 chr4 183275317 183275629 -19052718 - AluJo SINE Alu -4 308 2 523 252 157 76 chr4 183275629 183275718 -19052629 + L1ME LINE L1 5588 5668 -453 1770 171 16 19 chr4 183276142 183276511 -19051836 - L1MA6 LINE L1 -5 6295 5928 325 335 132 26 chr4 183276560 183276787 -19051560 - L3 LINE CR1 -1123 454 204 3013 181 42 19 chr4 183277161 183277751 -19050596 + LTR31 LTR ERV1 1 604 -15 402 311 151 23 chr4 183277976 183278275 -19050072 + L2 LINE L2 2969 3305 -8 548 343 0 5 chr4 183278801 183279002 -19049345 + MIR SINE MIR 62 261 -1 214 326 35 12 chr4 183279249 183279335 -19049012 + MIR3 SINE MIR 72 159 -49 382 307 9 0 chr4 183280214 183280328 -19048019 + CT-rich Low_complexity Low_complexity 2 116 0 2136 130 3 74 chr4 183281273 183281664 -19046683 + THE1B LTR MaLR 1 363 -1 389 354 70 42 chr4 183282051 183282653 -19045694 + L2 LINE L2 2642 3268 -4 202 281 53 0 chr4 183282854 183282911 -19045436 - L3 LINE CR1 -175 1402 1343 2076 162 16 34 chr4 183283052 183283440 -19044907 + MLT1B LTR MaLR 3 383 -7 232 188 0 21 chr4 183283575 183283623 -19044724 - L2 LINE L2 -16 3297 3251 316 245 31 20 chr4 183283642 183283740 -19044607 - MIR SINE MIR -116 146 48 371 321 89 18 chr4 183283766 183283934 -19044413 + MIR SINE MIR 21 200 -62 389 311 39 17 chr4 183284445 183284625 -19043722 + MIR SINE MIR 30 213 -49 * 1169 219 8 8 chr4 183284624 183284861 -19043486 - MIR SINE MIR 0 262 26 1171 139 193 11 chr4 183285739 183286013 -19042334 - MER46A DNA MER2_type 0 236 38 305 188 25 50 chr4 183286344 183286424 -19041923 + MER46A DNA MER2_type 68 145 -91 2004 149 7 79 chr4 183286624 183287081 -19041266 + L1MA5 LINE L1 5872 6295 -5 471 275 86 25 chr4 183287413 183287635 -19040712 - MIR SINE MIR -27 235 2 873 198 6 28 chr4 183288499 183288676 -19039671 + AluJb SINE Alu 136 308 -4 180 77 0 0 chr4 183290690 183290716 -19037631 + (TAA)n Simple_repeat Simple_repeat 2 27 0 25 0 0 0 chr4 183291097 183291122 -19037225 + AT_rich Low_complexity Low_complexity 1 25 0 603 48 0 12 chr4 183292145 183292229 -19036118 + AluY SINE Alu 1 83 -227 3053 78 22 20 chr4 183292231 183292678 -19035669 - LTR7 LTR ERV1 -2 448 1 1833 51 0 0 chr4 183292678 183292894 -19035453 + AluY SINE Alu 79 294 -17 370 230 80 20 chr4 183293790 183293890 -19034457 - MER5A DNA MER1_type -80 109 4 1431 199 79 3 chr4 183294383 183294700 -19033647 + MER58B DNA MER1_type 1 341 0 203 371 19 19 chr4 183295130 183295235 -19033112 + L2 LINE L2 3175 3279 -34 5739 184 41 19 chr4 183295457 183297643 -19030704 - L1PA15 LINE L1 -2 6163 3914 243 339 35 0 chr4 183297907 183298078 -19030269 - L1M4 LINE L1 -2314 3832 3656 22 35 0 0 chr4 183298247 183298276 -19030071 + AT_rich Low_complexity Low_complexity 1 29 0 222 157 14 71 chr4 183298530 183298600 -19029747 + T-rich Low_complexity Low_complexity 5 70 0 27 29 0 0 chr4 183299743 183299777 -19028570 + AT_rich Low_complexity Low_complexity 1 34 0 2548 55 0 7 chr4 183300171 183300481 -19027866 + AluY SINE Alu 1 308 -3 1070 79 0 0 chr4 183300697 183300836 -19027511 + MER85 DNA T2_type 1 139 0 852 75 0 0 chr4 183301176 183301283 -19027064 + AluSq/x SINE Alu 1 107 -206 22 35 0 0 chr4 183301528 183301557 -19026790 + AT_rich Low_complexity Low_complexity 1 29 0 186 43 0 0 chr4 183302182 183302205 -19026142 + (T)n Simple_repeat Simple_repeat 1 23 0 228 295 63 11 chr4 183302406 183302501 -19025846 - MLT1L LTR MaLR -117 498 399 479 310 37 42 chr4 183302628 183302844 -19025503 - MLT1L LTR MaLR -364 251 37 27 29 0 0 chr4 183303640 183303674 -19024673 + AT_rich Low_complexity Low_complexity 1 34 0 687 269 74 51 chr4 183303936 183304248 -19024099 - MLT1J1 LTR MaLR -127 319 1 236 227 82 62 chr4 183304716 183304813 -19023534 + L3b LINE CR1 1419 1517 -66 893 255 44 20 chr4 183305403 183305654 -19022693 - MIR SINE MIR 0 262 6 1896 115 0 22 chr4 183307261 183307563 -19020784 - AluSx SINE Alu 0 315 20 1827 186 0 3 chr4 183308084 183308395 -19019952 + AluJo SINE Alu 1 310 -2 252 311 47 47 chr4 183308576 183308724 -19019623 - MIR SINE MIR -8 254 107 196 207 276 23 chr4 183309128 183309215 -19019132 - MER5A DNA MER1_type -77 112 4 2619 36 0 0 chr4 183309410 183309711 -19018636 - AluY SINE Alu -10 301 1 4160 140 39 0 chr4 183311238 183311940 -19016407 - L1MC1 LINE L1 -207 6126 5398 268 138 17 35 chr4 183311948 183312006 -19016341 - Alu SINE Alu 0 302 246 1021 244 119 78 chr4 183312070 183312127 -19016220 - L2 LINE L2 -1037 2277 2224 180 0 0 0 chr4 183312127 183312147 -19016200 + (TG)n Simple_repeat Simple_repeat 2 21 0 1021 244 119 78 chr4 183312147 183312695 -19015652 - L2 LINE L2 -1090 2224 1647 205 308 68 15 chr4 183312699 183312832 -19015515 + L2 LINE L2 1965 2104 -1210 343 366 38 0 chr4 183312839 183312970 -19015377 - MER91C DNA MER1_type -3 137 2 645 198 39 22 chr4 183313445 183313627 -19014720 + L1ME1 LINE L1 5831 6015 -151 841 141 32 6 chr4 183313627 183313783 -19014564 + L1MA10 LINE L1 6175 6334 0 1822 158 4 0 chr4 183313866 183314145 -19014202 + AluJb SINE Alu 7 286 -26 278 130 0 19 chr4 183314195 183314232 -19014115 + (GA)n Simple_repeat Simple_repeat 2 39 -15 2254 121 0 0 chr4 183314232 183314539 -19013808 + AluSc SINE Alu 1 307 -2 278 130 0 19 chr4 183314539 183314555 -19013792 + (GA)n Simple_repeat Simple_repeat 39 54 0 376 353 62 37 chr4 183316950 183317273 -19011074 - L2 LINE L2 -383 2931 2601 1863 215 25 18 chr4 183317547 183318141 -19010206 + MER82 DNA MER2_type 1 652 -1 21 0 0 0 chr4 183318445 183318466 -19009881 + AT_rich Low_complexity Low_complexity 1 21 0 336 262 136 0 chr4 183319290 183319393 -19008954 + MIR SINE MIR 35 151 -111 409 307 32 106 chr4 183322340 183322623 -19005724 - MLT1K LTR MaLR -318 270 9 483 187 12 36 chr4 183323004 183323170 -19005177 + CT-rich Low_complexity Low_complexity 1 162 0 1088 187 6 0 chr4 183323170 183323352 -19004995 - AluJb SINE Alu -10 302 120 2003 128 73 50 chr4 183323430 183323868 -19004479 - LTR7 LTR ERV1 -2 448 1 1775 148 9 54 chr4 183323985 183324302 -19004045 + AluSq SINE Alu 1 303 -10 804 257 165 45 chr4 183324392 183324859 -19003488 - LTR33A LTR ERVL 0 523 1 2090 107 0 50 chr4 183324939 183325258 -19003089 - AluSq SINE Alu -10 303 1 365 40 20 0 chr4 183325550 183325600 -19002747 + AluY SINE Alu 1 51 -250 866 193 6 18 chr4 183325853 183326024 -19002323 - AluJb SINE Alu -11 301 133 283 194 69 0 chr4 183326444 183326516 -19001831 - L1MA9 LINE L1 0 6312 6236 216 163 0 0 chr4 183326516 183326559 -19001788 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 309 148 66 0 chr4 183326563 183326624 -19001723 - L1MA9 LINE L1 -89 6223 6159 2720 205 21 2 chr4 183326635 183327166 -19001181 + MER67A LTR ERV1 2 542 -1 625 73 0 0 chr4 183327195 183327277 -19001070 - AluSc SINE Alu -218 91 10 3169 69 21 2 chr4 183327378 183327799 -19000548 + MER41-int LTR ERV1 4630 5058 -888 4881 83 2 0 chr4 183327799 183328438 -18999909 - THE1B-int LTR MaLR -936 644 5 2019 137 30 70 chr4 183328467 183328655 -18999692 - THE1B LTR MaLR -6 358 191 2732 16 0 16 chr4 183328655 183328970 -18999377 - AluY SINE Alu -1 310 1 2019 137 30 70 chr4 183328970 183329154 -18999193 - THE1B LTR MaLR -173 191 1 613 118 82 18 chr4 183329154 183329264 -18999083 - MSTB LTR MaLR -309 117 1 970 223 64 30 chr4 183329304 183329569 -18998778 - MER34 LTR ERV1 -257 285 12 261 0 0 0 chr4 183330345 183330374 -18997973 + (TG)n Simple_repeat Simple_repeat 2 30 0 1790 94 0 13 chr4 183330376 183330609 -18997738 - AluSg SINE Alu -32 278 49 232 331 86 32 chr4 183331136 183331604 -18996743 - L1M4 LINE L1 -1542 4604 4112 315 311 121 0 chr4 183332005 183332137 -18996210 - MLT1K LTR MaLR -259 329 182 411 331 7 22 chr4 183332358 183332494 -18995853 + L2 LINE L2 3162 3295 -18 1689 174 0 0 chr4 183332847 183333128 -18995219 + AluSx SINE Alu 28 308 -4 194 279 0 0 chr4 183333140 183333183 -18995164 + MIR SINE MIR 55 97 -165 248 294 74 37 chr4 183333220 183333383 -18994964 + MIR SINE MIR 94 262 0 2679 128 30 9 chr4 183333772 183334211 -18994136 + MER83 LTR ERV1 1 448 0 17452 117 20 12 chr4 183334690 183337493 -18990854 + L1P LINE L1 725 3549 -2597 24 67 0 0 chr4 183387625 183387670 -18940677 + AT_rich Low_complexity Low_complexity 1 45 0 276 77 0 0 chr4 183387734 183387773 -18940574 + (TATAA)n Simple_repeat Simple_repeat 4 42 0 225 250 0 0 chr4 183388099 183388147 -18940200 + GA-rich Low_complexity Low_complexity 1 48 0 1516 154 46 36 chr4 183389482 183389762 -18938585 - AluJo SINE Alu -23 289 7 2091 126 0 13 chr4 183390279 183390581 -18937766 - AluSx SINE Alu -14 298 1 22 70 0 0 chr4 183391032 183391075 -18937272 + AT_rich Low_complexity Low_complexity 1 43 0 374 113 41 0 chr4 183391076 183391173 -18937174 + (TTAA)n Simple_repeat Simple_repeat 4 104 0 1616 199 0 0 chr4 183391474 183391766 -18936581 + Tigger1 DNA MER2_type 1 292 -2126 * 11259 121 27 12 chr4 183391761 183393747 -18934600 + Tigger1 DNA MER2_type 399 2417 -1 1531 179 0 0 chr4 183393846 183394092 -18934255 - AluJo SINE Alu -18 294 49 253 375 29 7 chr4 183394930 183395066 -18933281 - MIR3 SINE MIR -7 201 63 1638 177 7 7 chr4 183395285 183395573 -18932774 + AluJb SINE Alu 1 288 -24 3408 178 30 0 chr4 183395690 183396363 -18931984 + L1MB2 LINE L1 5461 6153 -18 910 220 110 25 chr4 183396363 183396700 -18931647 + MSTD LTR MaLR 2 396 0 206 258 149 102 chr4 183397047 183397254 -18931093 - L2 LINE L2 -61 3252 3025 2110 67 4 4 chr4 183397254 183397523 -18930824 + AluY SINE Alu 35 303 -8 206 258 149 102 chr4 183397523 183397610 -18930737 - L2 LINE L2 -288 3025 2944 429 323 239 34 chr4 183398172 183398999 -18929348 + L3 LINE CR1 283 1279 -298 273 239 14 14 chr4 183399057 183399128 -18929219 + MIR SINE MIR 66 136 -72 22 0 0 0 chr4 183400265 183400287 -18928060 + AT_rich Low_complexity Low_complexity 1 22 0 311 218 23 69 chr4 183401156 183401243 -18927104 + L1MC4 LINE L1 6621 6703 -1339 252 184 0 0 chr4 183401243 183401292 -18927055 + (TATATG)n Simple_repeat Simple_repeat 3 51 0 228 264 0 0 chr4 183401297 183401350 -18926997 + HAL1 LINE L1 664 716 -1791 229 227 13 13 chr4 183401373 183401448 -18926899 + (TATATG)n Simple_repeat Simple_repeat 4 78 0 2345 89 0 0 chr4 183403113 183403404 -18924943 - AluSg SINE Alu -17 293 3 2069 107 4 4 chr4 183404486 183404799 -18923548 + AluSx SINE Alu 5 317 0 3573 174 35 91 chr4 183406744 183407724 -18920623 + Charlie1a DNA MER1_type 42 966 -489 204 40 0 0 chr4 183407749 183407774 -18920573 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 473 263 50 110 chr4 183407968 183408074 -18920273 + L2 LINE L2 3036 3147 -166 297 0 0 0 chr4 183408074 183408107 -18920240 + (TA)n Simple_repeat Simple_repeat 2 34 0 473 263 50 110 chr4 183408107 183408281 -18920066 + L2 LINE L2 3147 3299 -14 297 0 0 0 chr4 183408318 183408351 -18919996 + (TG)n Simple_repeat Simple_repeat 1 33 0 324 299 166 57 chr4 183408652 183408863 -18919484 + L3 LINE CR1 1337 1570 -7 915 199 24 15 chr4 183409159 183409365 -18918982 - L1PB4 LINE L1 -2 6154 5947 232 240 0 27 chr4 183409429 183409504 -18918843 + L1PB4 LINE L1 2844 2916 -3933 1346 171 7 0 chr4 183409520 183409899 -18918448 + L1PB4 LINE L1 2905 6659 -200 5519 141 5 36 chr4 183410259 183411106 -18917241 - L1PA14 LINE L1 -16 6145 5369 10815 27 4 135 chr4 183411106 183412697 -18915650 + SVA Other Other 5 1386 0 5519 141 5 36 chr4 183412697 183413481 -18914866 - L1PA14 LINE L1 -792 5369 4563 23915 61 2 1 chr4 183413481 183417491 -18910856 + L1PA2 LINE L1 2141 6153 -2 23 54 0 0 chr4 183417775 183417812 -18910535 + AT_rich Low_complexity Low_complexity 1 37 0 1485 159 39 42 chr4 183418783 183419066 -18909281 - AluJo SINE Alu -15 297 16 25 0 0 0 chr4 183419106 183419131 -18909216 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr4 183419752 183419788 -18908559 + AT_rich Low_complexity Low_complexity 1 36 0 380 294 54 92 chr4 183423563 183423879 -18904468 - L1MDa LINE L1 -3157 3383 3080 402 310 71 48 chr4 183423955 183424065 -18904282 - L1MDa LINE L1 -3614 2926 2820 2103 109 3 0 chr4 183424065 183424350 -18903997 - AluSx SINE Alu -18 294 9 402 310 71 48 chr4 183424350 183424632 -18903715 - L1MDa LINE L1 -3720 2820 2525 246 303 90 0 chr4 183425002 183425091 -18903256 + L2 LINE L2 3214 3310 -3 381 250 12 6 chr4 183425465 183425633 -18902714 + (TA)n Simple_repeat Simple_repeat 2 170 0 21 0 0 0 chr4 183427005 183427026 -18901321 + AT_rich Low_complexity Low_complexity 1 21 0 501 114 13 0 chr4 183428397 183428476 -18899871 - MADE1 DNA Mariner 0 80 1 779 267 16 5 chr4 183429239 183429426 -18898921 + MIR SINE MIR 72 260 -2 1531 192 3 45 chr4 183429537 183429850 -18898497 + AluJo SINE Alu 1 300 -12 603 165 49 0 chr4 183429861 183430025 -18898322 + GA-rich Low_complexity Low_complexity 4 175 0 706 263 55 51 chr4 183431351 183431578 -18896769 - MIR SINE MIR -5 257 27 2617 20 7 3 chr4 183431578 183431881 -18896466 - AluY SINE Alu -7 304 1 706 263 55 51 chr4 183431881 183431908 -18896439 - MIR SINE MIR -235 27 2 23 0 0 0 chr4 183432635 183432658 -18895689 + AT_rich Low_complexity Low_complexity 1 23 0 242 239 30 0 chr4 183432836 183432903 -18895444 - MIR SINE MIR -96 166 98 352 311 98 21 chr4 183432971 183433164 -18895183 - MIR SINE MIR 0 262 55 724 242 57 33 chr4 183433165 183433376 -18894971 + LTR40c LTR ERVL 2 217 -248 297 0 0 0 chr4 183433629 183433662 -18894685 + (TG)n Simple_repeat Simple_repeat 2 34 0 1833 116 0 4 chr4 183433662 183433912 -18894435 - AluSc SINE Alu -26 283 35 255 255 11 11 chr4 183433944 183434038 -18894309 - HAL1 LINE L1 -322 2185 2092 184 122 49 0 chr4 183434059 183434100 -18894247 + (TA)n Simple_repeat Simple_repeat 1 43 0 6644 229 107 30 chr4 183434229 183435188 -18893159 - L1MDa LINE L1 -4377 2163 1279 1704 186 0 7 chr4 183435188 183435489 -18892858 - AluJb SINE Alu -13 299 1 6644 229 107 30 chr4 183435489 183436535 -18891812 - L1MDa LINE L1 -5261 1279 4 816 160 23 34 chr4 183438480 183438655 -18889692 + L1MC1 LINE L1 6161 6333 0 702 204 29 17 chr4 183440599 183440771 -18887576 + L1MA7 LINE L1 6041 6214 -77 544 292 78 60 chr4 183441259 183441782 -18886565 + L1ME3A LINE L1 5030 5575 -595 2358 84 0 7 chr4 183441782 183442091 -18886256 + AluSc SINE Alu 1 307 -2 544 292 78 60 chr4 183442091 183442469 -18885878 + L1ME3A LINE L1 5575 5945 -225 321 228 0 0 chr4 183442489 183442568 -18885779 + (TA)n Simple_repeat Simple_repeat 1 79 0 1132 174 113 39 chr4 183442776 183443058 -18885289 + MLT1D LTR MaLR 159 461 -44 1408 247 50 42 chr4 183443068 183443546 -18884801 + MER74B LTR ERVL 66 547 -75 335 278 52 9 chr4 183443475 183443590 -18884757 - MER88 LTR ERVL -299 165 46 * 312 143 0 0 chr4 183443612 183443661 -18884686 + MLT1D LTR MaLR 457 505 0 1658 155 38 3 chr4 183445272 183445562 -18882785 - AluSx SINE Alu -12 300 1 43 0 0 0 chr4 183445983 183446026 -18882321 + AT_rich Low_complexity Low_complexity 1 43 0 1086 217 45 21 chr4 183446026 183446334 -18882013 - L1MB5 LINE L1 -6 6174 5853 1791 145 13 19 chr4 183447212 183447523 -18880824 - AluSg SINE Alu -1 309 1 700 256 61 11 chr4 183448659 183448839 -18879508 + MLT1H1 LTR MaLR 367 555 0 234 337 50 0 chr4 183449022 183449123 -18879224 + MLT1-int LTR MaLR 362 467 -904 324 302 50 104 chr4 183449567 183449931 -18878416 + MLT1-int LTR MaLR 1004 1347 -24 1206 267 67 9 chr4 183449975 183450316 -18878031 + MLT1H1 LTR MaLR 151 511 -44 2501 238 52 35 chr4 183450382 183451560 -18876787 - L1ME1 LINE L1 -73 6093 4896 23 33 0 0 chr4 183451827 183451857 -18876490 + AT_rich Low_complexity Low_complexity 1 30 0 1761 194 30 115 chr4 183452784 183453383 -18874964 - L1MD3 LINE L1 -27 7968 7421 5266 194 21 34 chr4 183453842 183455005 -18873342 + L1 LINE L1 1070 2218 -4631 1200 222 3 34 chr4 183455423 183455720 -18872627 + L1 LINE L1 5770 6057 -791 2793 185 36 2 chr4 183455820 183456424 -18871923 + L1MA4A LINE L1 1770 2394 -4455 4943 167 7 19 chr4 183456548 183457632 -18870715 + L1MA4A LINE L1 5770 6846 -159 533 163 14 50 chr4 183457708 183457835 -18870512 + L1MA4A LINE L1 6863 6986 -19 501 56 127 0 chr4 183457835 183457906 -18870441 + MADE1 DNA Mariner 1 80 0 533 163 14 50 chr4 183457906 183457919 -18870428 + L1MA4A LINE L1 6986 6998 -7 202 325 146 50 chr4 183458222 183458687 -18869660 - L2 LINE L2 -339 2975 2466 364 336 179 34 chr4 183458970 183459785 -18868562 - L2 LINE L2 -1050 2264 1332 347 328 85 65 chr4 183461159 183461702 -18866645 + ERVL LTR ERVL 1031 1584 -4180 589 114 19 0 chr4 183462035 183462140 -18866207 + (TCTA)n Simple_repeat Simple_repeat 1 107 0 783 197 37 17 chr4 183462735 183462961 -18865386 + MER106B DNA MER1_type 6 1059 0 245 325 35 18 chr4 183466214 183466328 -18862019 - L2 LINE L2 -3 3310 3195 1889 275 80 27 chr4 183466974 183467622 -18860725 + L1ME3A LINE L1 3359 4078 -2068 2341 62 3 10 chr4 183467622 183467930 -18860417 - AluY SINE Alu -5 306 1 1889 275 80 27 chr4 183467930 183468257 -18860090 + L1ME3A LINE L1 4078 4386 -1760 234 0 0 0 chr4 183468257 183468283 -18860064 + (CA)n Simple_repeat Simple_repeat 2 27 0 3598 189 103 74 chr4 183468283 183468717 -18859630 + L1MC3 LINE L1 6647 7067 -718 247 263 13 40 chr4 183468717 183468793 -18859554 + MLT1F1 LTR MaLR 43 116 -451 2070 146 89 22 chr4 183468795 183469200 -18859147 + MSTB1 LTR MaLR 1 432 0 3598 189 103 74 chr4 183469200 183469793 -18858554 + L1MC3 LINE L1 7067 7784 -1 251 193 151 25 chr4 183469817 183469936 -18858411 + L1ME3A LINE L1 4410 4543 -1603 463 258 106 40 chr4 183470406 183470728 -18857619 + L1ME3A LINE L1 4471 4813 -1333 242 270 113 0 chr4 183470846 183470961 -18857386 + L1ME3A LINE L1 4987 5114 -1032 419 286 83 71 chr4 183471115 183471511 -18856836 + L1ME3A LINE L1 5291 5701 -469 1685 104 4 0 chr4 183471511 183471751 -18856596 - AluSx SINE Alu -18 294 54 419 286 83 71 chr4 183471751 183471945 -18856402 + L1ME3A LINE L1 5701 5891 -279 393 276 79 6 chr4 183472727 183472884 -18855463 + L1ME3A LINE L1 5991 6170 0 234 314 0 14 chr4 183472977 183473047 -18855300 + L2 LINE L2 3245 3313 0 844 265 11 66 chr4 183473713 183474060 -18854287 - L1ME3 LINE L1 -1 6161 5834 1236 208 20 105 chr4 183474078 183474535 -18853812 + MER65C LTR ERV1 1 418 -43 26 0 0 0 chr4 183474789 183474815 -18853532 + AT_rich Low_complexity Low_complexity 1 26 0 225 91 136 0 chr4 183475516 183475560 -18852787 + Alu SINE Alu 251 300 -1 22 56 0 0 chr4 183477811 183477847 -18850500 + AT_rich Low_complexity Low_complexity 1 36 0 297 0 0 0 chr4 183478108 183478141 -18850206 + (CA)n Simple_repeat Simple_repeat 2 34 0 3947 251 49 25 chr4 183478224 183479413 -18848934 - L1M4b LINE L1 -5301 1245 14 257 332 184 21 chr4 183479605 183479795 -18848552 - MIR SINE MIR -34 228 8 1607 291 101 41 chr4 183480004 183480990 -18847357 - HAL1 LINE L1 -40 2467 1422 22 0 0 0 chr4 183481156 183481178 -18847169 + AT_rich Low_complexity Low_complexity 1 22 0 584 259 75 0 chr4 183481209 183481356 -18846991 - MER5B DNA MER1_type -19 159 2 2946 67 0 3 chr4 183481839 183482227 -18846120 + L1PA4 LINE L1 5766 6152 -3 23 68 0 0 chr4 183483574 183483618 -18844729 + AT_rich Low_complexity Low_complexity 1 44 0 204 40 0 0 chr4 183484765 183484790 -18843557 + (TTCCC)n Simple_repeat Simple_repeat 1 25 0 685 244 89 9 chr4 183485162 183485387 -18842960 + L1MC4 LINE L1 6461 6703 -1339 1290 264 108 8 chr4 183485431 183485939 -18842408 + L1MC4 LINE L1 7342 7900 -142 319 291 24 55 chr4 183488127 183488254 -18840093 + HAL1 LINE L1 1441 1563 -944 2468 165 39 33 chr4 183488323 183488862 -18839485 + L1MC2 LINE L1 5795 6336 -8 213 39 0 0 chr4 183488929 183488955 -18839392 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 180 176 0 0 chr4 183489011 183489045 -18839302 + (TA)n Simple_repeat Simple_repeat 1 34 0 239 54 27 0 chr4 183489313 183489350 -18838997 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 292 271 14 0 chr4 183489365 183489435 -18838912 + Charlie7 DNA MER1_type 507 577 -2035 42368 36 22 1 chr4 183489447 183495465 -18832882 + L1PA2 LINE L1 1 6154 -1 207 0 0 0 chr4 183496879 183496902 -18831445 + (A)n Simple_repeat Simple_repeat 1 23 0 32 0 0 0 chr4 183498655 183498687 -18829660 + AT_rich Low_complexity Low_complexity 1 32 0 235 289 0 22 chr4 183498883 183498973 -18829374 + L2 LINE L2 1419 1506 -1808 2089 72 0 75 chr4 183498988 183499309 -18829038 + AluY SINE Alu 1 297 -14 959 215 154 40 chr4 183499468 183499766 -18828581 + MLT1D LTR MaLR 173 504 -1 4909 246 35 14 chr4 183499769 183500463 -18827884 - L1M4 LINE L1 -5176 1366 631 1509 192 73 24 chr4 183500463 183500832 -18827515 - MLT1B LTR MaLR 0 390 4 4909 246 35 14 chr4 183500832 183501460 -18826887 - L1M4 LINE L1 -5911 631 17 651 173 0 0 chr4 183501709 183501866 -18826481 - AluJo SINE Alu 0 333 177 673 186 0 0 chr4 183501868 183501981 -18826366 - AluJo SINE Alu -199 113 1 224 59 29 0 chr4 183502763 183502797 -18825550 + (CA)n Simple_repeat Simple_repeat 1 35 0 202 143 24 0 chr4 183503310 183503352 -18824995 + (TA)n Simple_repeat Simple_repeat 1 43 0 1655 176 40 31 chr4 183504308 183504661 -18823686 + MLT1A1 LTR MaLR 4 359 -6 2172 119 0 0 chr4 183504822 183505124 -18823223 - AluSc SINE Alu -7 302 1 1574 172 39 0 chr4 183505942 183506227 -18822120 + AluJo SINE Alu 1 296 -16 2354 63 10 0 chr4 183506932 183507231 -18821116 + AluY SINE Alu 1 302 -9 251 267 137 50 chr4 183507411 183507572 -18820775 - MIR SINE MIR -21 241 67 249 311 60 3 chr4 183508286 183508491 -18819856 + L1M2c LINE L1 940 1305 -4825 332 232 107 85 chr4 183508825 183509002 -18819345 + L2 LINE L2 1639 1819 -1495 260 213 0 0 chr4 183509009 183509056 -18819291 + MER47A DNA MER2_type 2 48 -318 1615 182 11 69 chr4 183509080 183509459 -18818888 + MER47A DNA MER2_type 10 366 0 320 200 120 20 chr4 183509460 183509560 -18818787 + L2 LINE L2 1825 1934 -1380 1026 312 88 9 chr4 183509570 183509993 -18818354 + L2 LINE L2 2153 2608 -706 28 48 0 0 chr4 183510289 183510331 -18818016 + AT_rich Low_complexity Low_complexity 1 42 0 2766 170 18 4 chr4 183510507 183510995 -18817352 + LOR1a LTR ERV1 1 495 -2 236 313 31 0 chr4 183511784 183511848 -18816499 + MIR SINE MIR 38 103 -105 201 408 5 25 chr4 183512486 183512687 -18815660 - L2 LINE L2 -337 2977 2781 269 320 90 22 chr4 183512699 183512877 -18815470 - L2 LINE L2 -676 2638 2449 2210 221 30 65 chr4 183512877 183513511 -18814836 - LTR9 LTR ERV1 0 612 1 1513 249 148 11 chr4 183513518 183513991 -18814356 + MLT1F1 LTR MaLR 1 538 -29 218 287 11 11 chr4 183514727 183514738 -18813609 + (TA)n Simple_repeat Simple_repeat 2 12 -83 1946 160 9 12 chr4 183514738 183515082 -18813265 - MER2 DNA MER2_type -1 343 1 218 287 11 11 chr4 183515082 183515164 -18813183 + (TA)n Simple_repeat Simple_repeat 11 95 0 204 330 103 47 chr4 183515194 183515427 -18812920 - L2 LINE L2 -72 3241 2996 239 294 94 44 chr4 183515998 183516273 -18812074 + HAL1 LINE L1 1521 1809 -698 5832 141 100 12 chr4 183516532 183517328 -18811019 + Tigger3b DNA MER2_type 1 927 -2101 185 65 32 0 chr4 183517328 183517359 -18810988 + (CTCA)n Simple_repeat Simple_repeat 3 34 0 5832 141 100 12 chr4 183517359 183517694 -18810653 + Tigger3b DNA MER2_type 927 1231 0 1958 154 0 0 chr4 183517740 183518026 -18810321 + AluSx SINE Alu 1 286 -26 28 0 0 0 chr4 183518026 183518054 -18810293 + AT_rich Low_complexity Low_complexity 1 28 0 360 305 40 58 chr4 183518314 183518540 -18809807 - L2 LINE L2 -14 3299 3078 241 222 28 0 chr4 183518723 183518795 -18809552 + (TA)n Simple_repeat Simple_repeat 1 74 0 263 169 14 0 chr4 183519378 183519449 -18808898 + (CA)n Simple_repeat Simple_repeat 1 72 0 24 32 0 0 chr4 183519475 183519506 -18808841 + AT_rich Low_complexity Low_complexity 1 31 0 1377 222 120 85 chr4 183522189 183522789 -18805558 - LTR1B LTR ERV1 -24 802 182 1987 125 78 26 chr4 183522798 183523142 -18805205 - THE1B LTR MaLR 0 364 3 7848 131 5 1 chr4 183523144 183524302 -18804045 - THE1B-int LTR MaLR 0 1580 418 374 23 0 0 chr4 183524309 183524352 -18803995 - THE1C LTR MaLR -331 44 2 198 286 18 0 chr4 183524369 183524425 -18803922 - MER5A DNA MER1_type -83 106 50 276 375 36 32 chr4 183524667 183524915 -18803432 + L2 LINE L2 2263 2511 -803 777 99 33 0 chr4 183525127 183525248 -18803099 - L1MA2 LINE L1 0 6304 6180 376 311 0 0 chr4 183525377 183525483 -18802864 - MLT1J LTR MaLR -297 214 109 378 296 170 75 chr4 183525487 183525781 -18802566 + MLT1J LTR MaLR 190 511 0 2051 122 3 0 chr4 183525909 183526196 -18802151 - AluSx SINE Alu -24 288 1 273 330 159 30 chr4 183528676 183528940 -18799407 - L2 LINE L2 -5 3267 2970 440 238 73 18 chr4 183529761 183529971 -18798376 + MER106B DNA MER1_type 16 1056 -3 23 54 0 0 chr4 183530760 183530797 -18797550 + AT_rich Low_complexity Low_complexity 1 37 0 222 317 67 42 chr4 183530797 183530917 -18797430 + L3 LINE CR1 1419 1541 -36 1794 114 0 4 chr4 183531580 183531834 -18796513 + AluY SINE Alu 49 301 -10 1033 251 87 52 chr4 183534232 183534714 -18793633 + L1ME3A LINE L1 5514 6012 -158 1684 224 72 69 chr4 183535757 183536412 -18791935 + L1ME3A LINE L1 5514 6170 0 29 70 0 0 chr4 183536940 183536997 -18791350 + AT_rich Low_complexity Low_complexity 1 57 0 227 317 0 0 chr4 183539758 183539818 -18788529 + CT-rich Low_complexity Low_complexity 4 63 0 329 0 24 0 chr4 183539864 183539905 -18788442 + (TG)n Simple_repeat Simple_repeat 2 43 0 34 42 0 0 chr4 183540600 183540648 -18787699 + AT_rich Low_complexity Low_complexity 1 48 0 231 309 43 75 chr4 183541012 183541106 -18787241 + L2 LINE L2 3182 3272 0 199 404 27 16 chr4 183541567 183541755 -18786592 - MIR3 SINE MIR -5 203 14 199 364 146 25 chr4 183542415 183542654 -18785693 + L2 LINE L2 2580 2847 -467 4888 198 17 24 chr4 183542780 183544439 -18783908 - L1MA10 LINE L1 -14 6320 4677 228 276 35 0 chr4 183544728 183544786 -18783561 + L2 LINE L2 3252 3311 -2 683 180 0 0 chr4 183544971 183545093 -18783254 - AluSg/x SINE Alu -9 301 180 1573 218 30 98 chr4 183545165 183545637 -18782710 - MER31B LTR ERV1 -9 457 18 562 292 80 76 chr4 183546030 183546984 -18781363 + L1ME LINE L1 27 989 -5130 2312 96 0 19 chr4 183546984 183547298 -18781049 + AluSg SINE Alu 1 308 -2 562 292 80 76 chr4 183547298 183547569 -18780778 + L1ME LINE L1 989 1257 -4862 416 310 100 66 chr4 183547789 183548237 -18780110 + L1ME LINE L1 2181 2653 -3476 1696 145 20 27 chr4 183548237 183548533 -18779814 - AluJo SINE Alu -18 294 1 416 310 100 66 chr4 183548533 183548633 -18779714 + L1ME LINE L1 2653 2748 -3381 365 255 95 52 chr4 183548812 183549043 -18779304 + L1ME LINE L1 3030 3270 -2859 2053 140 0 19 chr4 183549218 183549525 -18778822 + AluSx SINE Alu 1 301 -11 328 246 170 47 chr4 183549525 183549696 -18778651 + L1ME LINE L1 5373 5564 -2204 243 286 62 73 chr4 183549708 183549967 -18778380 + L1ME LINE L1 5599 5854 -299 468 346 29 57 chr4 183550403 183550926 -18777421 - ERVL LTR ERVL -480 5284 4777 2303 122 8 52 chr4 183550946 183551348 -18776999 - MLT1B LTR MaLR 0 390 7 5318 79 25 4 chr4 183551562 183552312 -18776035 - MER4E LTR ERV1 0 766 1 26 0 0 0 chr4 183552651 183552677 -18775670 + AT_rich Low_complexity Low_complexity 1 26 0 1727 182 15 78 chr4 183553071 183553483 -18774864 + MLT1B LTR MaLR 3 388 -2 1122 263 112 34 chr4 183554577 183555052 -18773295 - MLT1E3 LTR MaLR -112 512 1 620 332 56 37 chr4 183555269 183555638 -18772709 + HERV16 LTR ERVL 2144 2524 -2472 1508 226 75 45 chr4 183555638 183556128 -18772219 + MLT1D LTR MaLR 1 505 0 620 332 56 37 chr4 183556128 183556189 -18772158 + HERV16 LTR ERVL 2524 2582 -2414 2133 156 33 9 chr4 183556308 183556738 -18771609 + L1MA4 LINE L1 5857 6296 -4 246 81 0 0 chr4 183556794 183556831 -18771516 + (TG)n Simple_repeat Simple_repeat 1 37 0 223 343 65 41 chr4 183556886 183557055 -18771292 - MIR SINE MIR -37 225 53 965 249 82 73 chr4 183558173 183558622 -18769725 - MLT1D LTR MaLR -1 466 14 323 272 56 24 chr4 183558653 183558778 -18769569 + L1MEc LINE L1 2134 2262 -4134 208 270 0 68 chr4 183558971 183559045 -18769302 + L2 LINE L2 3245 3313 0 347 254 62 23 chr4 183559797 183559927 -18768420 - L1MEc LINE L1 -4128 2268 2134 28 0 0 0 chr4 183560635 183560663 -18767684 + AT_rich Low_complexity Low_complexity 1 28 0 324 83 0 0 chr4 183561341 183561389 -18766958 + (CA)n Simple_repeat Simple_repeat 2 49 0 2105 137 7 0 chr4 183561660 183561966 -18766381 + AluSg SINE Alu 1 308 -2 1634 222 127 4 chr4 183561979 183562429 -18765918 + MLT1D LTR MaLR 1 505 0 1352 220 59 99 chr4 183563022 183563428 -18764919 - MLT1A1 LTR MaLR 0 385 1 1814 115 31 7 chr4 183563593 183563881 -18764466 - L1PA13 LINE L1 -76 6087 5793 13674 216 27 34 chr4 183564039 183565431 -18762916 - L1MA4 LINE L1 -452 6550 5151 2250 106 6 6 chr4 183565431 183565742 -18762605 - AluY SINE Alu 0 311 1 13674 216 27 34 chr4 183565742 183566203 -18762144 - L1MA4 LINE L1 -1851 5151 4689 1983 134 67 17 chr4 183566203 183566560 -18761787 + THE1C LTR MaLR 1 375 0 13674 216 27 34 chr4 183566560 183569309 -18759038 - L1MA4 LINE L1 -2313 4689 1928 1201 203 3 67 chr4 183569501 183569801 -18758546 + AluJo SINE Alu 1 281 -31 2846 10 0 0 chr4 183570555 183570864 -18757483 - AluYa5 SINE Alu -2 309 1 24 67 0 0 chr4 183571020 183571065 -18757282 + AT_rich Low_complexity Low_complexity 1 45 0 3137 86 29 0 chr4 183571122 183571566 -18756781 - L1PA10 LINE L1 -9 6159 5703 186 303 76 62 chr4 183572163 183572308 -18756039 + L2 LINE L2 3167 3313 0 251 309 62 10 chr4 183572841 183572938 -18755409 + MIR SINE MIR 46 147 -61 28 0 0 0 chr4 183573122 183573150 -18755197 + AT_rich Low_complexity Low_complexity 1 28 0 1345 197 16 22 chr4 183573151 183573471 -18754876 - L1MB7 LINE L1 -2 6182 5865 515 175 0 109 chr4 183573561 183573698 -18754649 - L1MC1 LINE L1 -10 6323 6202 5777 209 60 12 chr4 183573706 183576292 -18752055 - L1MC1 LINE L1 -81 6532 3819 3038 250 31 9 chr4 183576392 183577371 -18750976 - L1MC1 LINE L1 -2851 3575 2576 2143 156 11 16 chr4 183577371 183577743 -18750604 - Tigger7 DNA MER2_type 0 2587 2218 3769 209 11 32 chr4 183577743 183578529 -18749818 - Tigger7 DNA MER2_type -1717 770 1 382 198 33 0 chr4 183578530 183578621 -18749726 - L1MC1 LINE L1 -3991 2616 2523 3135 132 110 18 chr4 183578625 183579421 -18748926 - L1MC1 LINE L1 -3961 2465 1505 2943 146 30 6 chr4 183579424 183579897 -18748450 + LTR9B LTR ERV1 5 488 -156 839 148 36 43 chr4 183580064 183580272 -18748075 - L1MCa LINE L1 -4561 1865 1506 3246 126 25 6 chr4 183580272 183580755 -18747592 + LTR9B LTR ERV1 1 492 -152 2651 205 24 55 chr4 183580787 183581603 -18746744 + MER4D LTR ERV1 1 903 0 5587 168 40 59 chr4 183581603 183582882 -18745465 - L1MCa LINE L1 -5067 1359 105 4171 19 0 0 chr4 183582876 183583358 -18744989 - L1P LINE L1 -1946 4200 3719 * 1791 41 0 0 chr4 183583358 183583575 -18744772 + L1PA3 LINE L1 5935 6152 -3 444 246 0 9 chr4 183583593 183583703 -18744644 - L1MCa LINE L1 -6317 109 1 5377 18 0 0 chr4 183583820 183584877 -18743470 - L1PA3 LINE L1 -287 5868 4812 478 338 129 28 chr4 183585068 183585456 -18742891 + L2 LINE L2 2886 3312 -1 1852 128 39 58 chr4 183586784 183587166 -18741181 - THE1C LTR MaLR 0 375 1 321 26 0 0 chr4 183587647 183587685 -18740662 + (TG)n Simple_repeat Simple_repeat 1 38 0 879 278 50 38 chr4 183588640 183588960 -18739387 + LTR40a LTR ERVL 193 516 -3 1305 286 102 44 chr4 183589172 183589826 -18738521 + HERVL68 LTR ERVL 917 1608 -3922 2801 245 75 49 chr4 183589826 183589901 -18738446 + HERVL68 LTR ERVL 2520 2592 -2938 1500 220 22 71 chr4 183589901 183590392 -18737955 + MLT1C LTR MaLR 1 467 0 2801 245 75 49 chr4 183590392 183591186 -18737161 + HERVL68 LTR ERVL 2592 3411 -2119 2407 269 25 17 chr4 183591203 183591856 -18736491 + HERVL68 LTR ERVL 3885 4542 -988 1030 186 62 95 chr4 183591909 183592062 -18736285 + MLT1E-int LTR MaLR 350 506 -865 216 0 0 0 chr4 183592062 183592086 -18736261 + (TG)n Simple_repeat Simple_repeat 1 24 0 * 267 31 0 0 chr4 183592085 183592117 -18736230 + (GA)n Simple_repeat Simple_repeat 1 32 0 1030 186 62 95 chr4 183592086 183592269 -18736078 + MLT1E-int LTR MaLR 506 645 -726 557 286 16 16 chr4 183592418 183592610 -18735737 + MLT1E-int LTR MaLR 696 887 -484 406 239 97 15 chr4 183593037 183593171 -18735176 + MLT1E-int LTR MaLR 1227 1371 0 1691 273 65 19 chr4 183593178 183593745 -18734602 + MLT1E LTR MaLR 1 593 0 316 321 36 21 chr4 183594539 183594732 -18733615 + MER89-int LTR ERV1 6081 6276 -525 2172 131 3 3 chr4 183594732 183595045 -18733302 + AluSq SINE Alu 1 313 0 294 335 86 0 chr4 183595170 183595322 -18733025 + HERVL68 LTR ERVL 2824 2988 -49 1640 230 82 25 chr4 183595447 183595934 -18732413 + LTR40a LTR ERVL 5 519 0 2005 209 40 19 chr4 183597849 183598274 -18730073 + MLT2B1 LTR ERVL 75 508 -12 278 162 29 15 chr4 183598945 183599013 -18729334 + MLT1J1 LTR MaLR 369 437 -9 246 250 216 0 chr4 183599035 183599151 -18729196 - MER106B DNA MER1_type -19 1040 900 241 329 106 68 chr4 183599248 183599570 -18728777 + L2 LINE L2 2823 3156 -157 1092 329 90 31 chr4 183600034 183600611 -18727736 - HERVL LTR ERVL -1867 3787 3177 699 260 0 0 chr4 183600613 183600759 -18727588 + MER58A DNA MER1_type 1 146 0 560 215 0 0 chr4 183600784 183600891 -18727456 + MER58A DNA MER1_type 118 224 0 680 315 28 9 chr4 183600903 183601119 -18727228 - HERVL LTR ERVL -2498 3156 2937 1933 90 4 4 chr4 183601226 183601482 -18726865 + AluSq SINE Alu 6 261 -52 276 114 0 0 chr4 183601584 183601628 -18726719 + MLT1E3 LTR MaLR 581 624 0 205 86 0 29 chr4 183602630 183602665 -18725682 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 371 21 21 0 chr4 183602889 183602937 -18725410 + (TG)n Simple_repeat Simple_repeat 2 50 0 431 285 116 6 chr4 183603486 183603658 -18724689 + MIR SINE MIR 2 192 -70 25 75 0 0 chr4 183604840 183604893 -18723454 + AT_rich Low_complexity Low_complexity 1 53 0 3025 145 0 28 chr4 183605604 183606114 -18722233 + HSMAR2 DNA Mariner 2 497 -805 1232 125 0 6 chr4 183606118 183606294 -18722053 - AluSq SINE Alu -3 310 136 31 68 0 0 chr4 183606393 183606452 -18721895 + AT_rich Low_complexity Low_complexity 1 59 0 24 77 0 0 chr4 183606496 183606548 -18721799 + AT_rich Low_complexity Low_complexity 1 52 0 1284 222 130 26 chr4 183606769 183607193 -18721154 - L1MD2 LINE L1 -13 6346 5879 707 158 31 24 chr4 183607202 183607329 -18721018 + Tigger2 DNA MER2_type 2570 2697 -21 1047 174 20 0 chr4 183607334 183607529 -18720818 - L1PA16 LINE L1 0 6166 5968 5765 228 44 31 chr4 183607537 183610061 -18718286 - L1MD2 LINE L1 -467 5892 3329 2067 102 0 41 chr4 183610163 183610477 -18717870 + AluSx SINE Alu 11 311 -1 248 220 138 3 chr4 183610703 183610846 -18717501 - L1P LINE L1 -741 5414 5254 201 74 0 0 chr4 183610846 183610873 -18717474 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 468 264 49 24 chr4 183611063 183611309 -18717038 - L1M4 LINE L1 -900 5246 4995 446 224 23 106 chr4 183611317 183611740 -18716607 + L1MDa LINE L1 2451 2846 -3694 1126 249 92 17 chr4 183611746 183612092 -18716255 + MLT1A2 LTR MaLR 1 372 -2 288 266 25 0 chr4 183612105 183612184 -18716163 + L1MDa LINE L1 2859 2939 -3601 2120 122 16 0 chr4 183612189 183612493 -18715854 + AluSx SINE Alu 4 312 0 906 275 82 0 chr4 183612523 183612879 -18715468 + L1MDa LINE L1 3034 3418 -3122 1453 195 8 0 chr4 183612879 183613135 -18715212 + MLT2B1 LTR ERVL 1 258 -262 994 248 7 16 chr4 183614159 183614469 -18713878 + MLT2B1 LTR ERVL 248 554 0 2915 236 55 31 chr4 183614471 183614782 -18713565 + L1MDa LINE L1 3416 3718 -2822 2222 69 3 13 chr4 183614782 183615086 -18713261 + AluY SINE Alu 1 301 -10 2915 236 55 31 chr4 183615086 183615906 -18712441 + L1MDa LINE L1 3718 4574 -1966 * 3306 42 0 0 chr4 183615902 183616302 -18712045 - L1PA4 LINE L1 -99 6056 5657 1414 189 44 25 chr4 183666405 183666722 -18661625 + MER44D DNA MER2_type 17 609 0 7628 132 33 21 chr4 183666899 183668184 -18660163 - HSMAR2 DNA Mariner 0 1302 3 546 323 53 14 chr4 183668265 183668758 -18659589 + L1MC1 LINE L1 3085 3596 -2944 5890 106 64 9 chr4 183669050 183670568 -18657779 - L1PA13 LINE L1 -11 6152 4591 517 271 41 30 chr4 183670568 183670834 -18657513 + L1MC1 LINE L1 4771 5039 -1501 26 30 0 0 chr4 183670902 183670935 -18657412 + AT_rich Low_complexity Low_complexity 1 33 0 1356 242 50 90 chr4 183670935 183671821 -18656526 - L1M1 LINE L1 -4381 3184 2351 396 0 0 0 chr4 183671833 183671877 -18656470 + (TG)n Simple_repeat Simple_repeat 2 45 0 1109 206 0 10 chr4 183671877 183672076 -18656271 - AluJb SINE Alu -29 283 87 988 253 58 3 chr4 183672103 183672463 -18655884 - L1M2c LINE L1 -4859 1860 1483 3807 153 7 0 chr4 183672607 183673187 -18655160 + THE1-int LTR MaLR 195 778 -802 4255 203 39 36 chr4 183673189 183674116 -18654231 + L1MC1 LINE L1 5268 6201 -526 2672 33 0 0 chr4 183674116 183674419 -18653928 + AluY SINE Alu 1 303 -8 4255 203 39 36 chr4 183674419 183674948 -18653399 + L1MC1 LINE L1 6201 6727 0 1017 332 58 11 chr4 183675093 183675557 -18652790 + MLT1H1 LTR MaLR 74 555 0 1170 268 25 7 chr4 183676730 183677014 -18651333 - MLT1E LTR MaLR -13 580 292 10283 220 40 19 chr4 183677844 183680208 -18648139 - L1MB1 LINE L1 -3 6165 3853 705 189 0 8 chr4 183680208 183680340 -18648007 - FLAM_C SINE Alu 0 133 3 10283 220 40 19 chr4 183680340 183681697 -18646650 - L1MB1 LINE L1 -2315 3853 2526 192 40 0 0 chr4 183681697 183681722 -18646625 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2240 46 0 21 chr4 183681722 183682007 -18646340 - AluY SINE Alu -32 279 1 10283 220 40 19 chr4 183682007 183682039 -18646308 - L1MB1 LINE L1 -3641 2527 2335 619 291 20 10 chr4 183682104 183682303 -18646044 + MLT1C LTR MaLR 267 467 0 270 0 0 0 chr4 183684865 183684895 -18643452 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 879 160 82 46 chr4 183688149 183688343 -18640004 + AluJb SINE Alu 92 292 -20 537 24 0 37 chr4 183689389 183689471 -18638876 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 221 81 0 27 chr4 183689704 183689741 -18638606 + (CAG)n Simple_repeat Simple_repeat 3 38 0 42451 34 24 1 chr4 183689880 183695891 -18632456 + L1PA3 LINE L1 2 6155 0 353 277 51 22 chr4 183696215 183696352 -18631995 + LTR50 LTR ERVL 21 161 -634 746 237 35 104 chr4 183696457 183696888 -18631459 - MER57A LTR ERV1 0 403 3 1720 297 29 60 chr4 183696891 183697844 -18630503 - LTR35-int LTR ERV1 -390 7147 6232 7457 92 8 21 chr4 183698251 183699323 -18629024 - MER11C LTR ERVK -13 1058 1 985 282 43 27 chr4 183699389 183699758 -18628589 - LTR35-int LTR ERV1 -1338 6199 5825 2282 228 14 47 chr4 183700083 183700738 -18627609 - LTR35-int LTR ERV1 -1720 5817 5185 1438 239 71 89 chr4 183700715 183701261 -18627086 - LTR35-int LTR ERV1 -1885 3051 2497 * 2213 107 17 0 chr4 183701261 183701560 -18626787 + AluSc SINE Alu 1 304 -5 1438 239 71 89 chr4 183701560 183702133 -18626214 - LTR35-int LTR ERV1 -2439 2497 1554 568 174 28 0 chr4 183702241 183702350 -18625997 - MER34 LTR ERV1 -305 237 126 500 231 111 23 chr4 183702484 183702700 -18625647 - LTR35-int LTR ERV1 -3488 1448 1214 3213 248 88 53 chr4 183702771 183703847 -18624500 - LTR28 LTR ERV1 -23 1732 1 237 304 8 40 chr4 183704167 183704292 -18624055 - MER34C LTR ERV1 -154 431 311 727 264 25 5 chr4 183704293 183704490 -18623857 - MER34C LTR ERV1 -228 357 157 2047 146 0 0 chr4 183704794 183705126 -18623221 + AluSg SINE Alu 1 332 0 540 171 9 9 chr4 183705126 183705231 -18623116 - LTR35-int LTR ERV1 -4504 432 328 2320 153 46 24 chr4 183705263 183705794 -18622553 - LTR35 LTR ERV1 -2 616 1 589 203 91 14 chr4 183706427 183706570 -18621777 - FRAM SINE Alu -12 154 1 343 110 0 96 chr4 183706584 183706657 -18621690 + LTR16A LTR ERVL 385 450 0 1879 142 3 29 chr4 183706877 183707187 -18621160 - AluSx SINE Alu -10 302 1 23 0 0 0 chr4 183707620 183707643 -18620704 + AT_rich Low_complexity Low_complexity 1 23 0 737 230 47 9 chr4 183708349 183708567 -18619780 + MER61D LTR ERV1 338 543 -18 225 128 51 0 chr4 183708648 183708687 -18619660 + MLT1G1 LTR MaLR 166 206 -389 481 279 35 45 chr4 183708841 183709042 -18619305 + L1MEc LINE L1 149 347 -6049 4227 200 42 23 chr4 183710556 183710984 -18617363 + L1MB3 LINE L1 4839 5257 -926 201 74 0 0 chr4 183710984 183711011 -18617336 + (CAA)n Simple_repeat Simple_repeat 1 27 0 4227 200 42 23 chr4 183711011 183711881 -18616466 + L1MB3 LINE L1 5257 6171 -12 2000 156 113 15 chr4 183712759 183713149 -18615198 + MSTA LTR MaLR 1 428 0 8643 181 37 5 chr4 183713149 183714730 -18613617 + MSTA-int LTR MaLR 1 1631 -20 1468 167 77 40 chr4 183714730 183715059 -18613288 + MSTA LTR MaLR 71 428 0 207 0 0 0 chr4 183715140 183715163 -18613184 + (T)n Simple_repeat Simple_repeat 1 23 0 21 36 0 0 chr4 183716486 183716514 -18611833 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr4 183717742 183717777 -18610570 + AT_rich Low_complexity Low_complexity 1 35 0 1848 181 81 41 chr4 183717780 183717860 -18610487 - LOR1b LTR ERV1 0 461 386 1927 162 42 25 chr4 183717860 183718218 -18610129 + THE1B LTR MaLR 1 364 0 1848 181 81 41 chr4 183718218 183718580 -18609767 - LOR1b LTR ERV1 -75 386 1 3209 137 11 36 chr4 183718580 183719133 -18609214 - LOR1b-int LTR ERV1 0 8120 7582 15851 156 45 42 chr4 183719148 183719543 -18608804 - LOR1b-int LTR ERV1 -1301 6819 6427 1541 46 0 10 chr4 183719543 183719739 -18608608 - L1PA4 LINE L1 -3 6152 5959 15851 156 45 42 chr4 183719739 183722681 -18605666 - LOR1b-int LTR ERV1 -1693 6427 3641 303 253 81 35 chr4 183723107 183723281 -18605066 + L1MC5 LINE L1 7736 7917 -44 930 232 58 6 chr4 183723666 183723925 -18604422 + LOR1b LTR ERV1 1 318 -143 1663 123 74 32 chr4 183724730 183725014 -18603333 + AluSx SINE Alu 1 296 -16 1076 151 21 5 chr4 183725031 183725217 -18603130 + L1P5 LINE L1 1 189 -6674 13107 198 44 46 chr4 183725233 183725928 -18602419 + L1P5 LINE L1 998 1693 -5174 257 0 30 0 chr4 183725928 183725961 -18602386 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 13107 198 44 46 chr4 183725961 183729333 -18599014 + L1P5 LINE L1 1693 5194 -1673 180 0 0 0 chr4 183729333 183729353 -18598994 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 13107 198 44 46 chr4 183729353 183730454 -18597893 + L1P5 LINE L1 5194 6296 -571 26 50 0 0 chr4 183732004 183732044 -18596303 + AT_rich Low_complexity Low_complexity 1 40 0 1769 91 0 0 chr4 183732151 183732381 -18595966 + AluY SINE Alu 1 230 -81 287 302 31 0 chr4 183732812 183732908 -18595439 + L1PA12 LINE L1 2084 2182 -5399 2874 250 20 14 chr4 183733124 183733961 -18594386 + L1PA12 LINE L1 2182 3023 -4558 4429 126 18 6 chr4 183733961 183734705 -18593642 - L1PA12 LINE L1 -4450 3134 2380 866 311 45 76 chr4 183734772 183735324 -18593023 + L2 LINE L2 2788 3313 0 329 342 35 15 chr4 183736487 183736686 -18591661 + L2 LINE L2 2154 2356 -958 823 306 55 40 chr4 183737027 183737504 -18590843 + LTR33 LTR ERVL 31 514 -7 21 0 0 0 chr4 183738406 183738427 -18589920 + AT_rich Low_complexity Low_complexity 1 21 0 233 98 33 33 chr4 183738439 183738500 -18589847 + (TA)n Simple_repeat Simple_repeat 1 61 0 26 64 0 0 chr4 183739485 183739532 -18588815 + AT_rich Low_complexity Low_complexity 1 47 0 1612 209 55 68 chr4 183739622 183740081 -18588266 + MSTB2 LTR MaLR 1 453 -4 1786 206 21 79 chr4 183740135 183740615 -18587732 + MLT1D LTR MaLR 13 464 -41 192 77 0 0 chr4 183740988 183741014 -18587333 + (A)n Simple_repeat Simple_repeat 1 26 0 1730 246 97 4 chr4 183741240 183741727 -18586620 - MER34 LTR ERV1 0 542 11 27 0 0 0 chr4 183742594 183742621 -18585726 + AT_rich Low_complexity Low_complexity 1 27 0 842 186 37 5 chr4 183742709 183742897 -18585450 - Tigger4(Zombi) DNA MER2_type 0 2731 2538 954 193 22 9 chr4 183742907 183743157 -18585190 - Tigger4(Zombi) DNA MER2_type -2431 300 4 12967 154 31 35 chr4 183743307 183745729 -18582618 - Tigger1 DNA MER2_type 0 2418 7 655 229 63 0 chr4 183745978 183746153 -18582194 + MER105 DNA DNA 4 189 -15 14489 170 27 9 chr4 183747897 183751891 -18576456 - L1MA2 LINE L1 0 7723 3658 5611 203 19 7 chr4 183751889 183752972 -18575375 - L1MA2 LINE L1 -6446 1119 24 * 420 280 48 48 chr4 183754107 183754296 -18574051 - MLT1J LTR MaLR -13 498 310 1882 148 3 10 chr4 183755819 183756117 -18572230 + AluSx SINE Alu 1 296 -16 23 68 0 0 chr4 183756368 183756412 -18571935 + AT_rich Low_complexity Low_complexity 1 44 0 5057 275 39 41 chr4 183756504 183758873 -18569474 + L1MB8 LINE L1 10 2370 -4589 828 262 37 43 chr4 183759047 183759517 -18568830 + L1MB8 LINE L1 4099 6988 -1 756 258 77 19 chr4 183760261 183760600 -18567747 - MER57A LTR ERV1 -2 401 103 558 325 45 51 chr4 183761248 183761583 -18566764 + MLT1J LTR MaLR 110 442 -69 740 269 6 0 chr4 183761637 183761819 -18566528 - L1MEc LINE L1 -6177 219 37 260 274 51 33 chr4 183761884 183762082 -18566265 + L1ME2 LINE L1 5745 5951 -213 4500 108 18 133 chr4 183762088 183763636 -18564711 + pTR5 LTR ERV1 741 2606 0 433 261 27 0 chr4 183763690 183763801 -18564546 + L1ME2 LINE L1 6011 6124 -40 285 300 42 0 chr4 183763820 183763940 -18564407 - L1MEc LINE L1 -4538 1858 1734 624 222 48 12 chr4 183764004 183764171 -18564176 + L1M2a LINE L1 105 277 -6891 952 92 15 0 chr4 183764174 183764304 -18564043 + AluSg/x SINE Alu 168 299 -13 451 287 54 85 chr4 183764344 183764885 -18563462 + L1M2a LINE L1 416 999 -6169 6147 240 43 57 chr4 183764941 183766570 -18561777 + L1M2a LINE L1 824 2474 -4693 1865 130 0 25 chr4 183766570 183766855 -18561492 + AluSx SINE Alu 14 291 -21 6147 240 43 57 chr4 183766855 183768174 -18560173 + L1M2a LINE L1 2474 3747 -3420 513 138 0 0 chr4 183768174 183768254 -18560093 - MADE1 DNA Mariner 0 80 1 6147 240 43 57 chr4 183768254 183769497 -18558850 + L1M2a LINE L1 3747 5006 -2161 1042 198 4 43 chr4 183769499 183769756 -18558591 + L1MA9 LINE L1 5796 6042 -270 472 258 90 21 chr4 183769796 183770029 -18558318 + L1MA9 LINE L1 6026 6274 -38 1555 147 200 11 chr4 183770603 183770963 -18557384 - MSTA LTR MaLR 0 428 1 1969 115 11 0 chr4 183771739 183772056 -18556291 + AluSc SINE Alu 1 320 0 243 300 23 19 chr4 183772595 183772826 -18555521 - L1ME LINE L1 -528 5642 5411 863 261 4 30 chr4 183772936 183773200 -18555147 - L1ME LINE L1 -1136 5010 4754 261 258 26 22 chr4 183773216 183773397 -18554950 - L1ME LINE L1 -1394 4752 4530 597 143 32 24 chr4 183773398 183773651 -18554696 + GA-rich Low_complexity Low_complexity 1 255 0 561 298 62 40 chr4 183773814 183774237 -18554110 - L1ME LINE L1 -1923 4223 3792 324 239 116 22 chr4 183774244 183774689 -18553658 - L1ME LINE L1 -2525 3621 2998 1234 328 72 36 chr4 183776751 183777492 -18550855 - L2 LINE L2 -1 3312 2518 2219 99 7 0 chr4 183777492 183777784 -18550563 - AluSx SINE Alu -18 294 1 1234 328 72 36 chr4 183777784 183778085 -18550262 - L2 LINE L2 -795 2518 2229 1846 256 9 7 chr4 183778096 183778521 -18549826 - MER74A LTR ERVL -15 543 118 292 324 51 25 chr4 183778691 183778956 -18549391 - L2 LINE L2 -1094 2220 1873 1974 281 50 21 chr4 183779013 183779256 -18549091 + L1M4 LINE L1 206 441 -6305 261 0 0 0 chr4 183779256 183779285 -18549062 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 1974 281 50 21 chr4 183779285 183779746 -18548601 + L1M4 LINE L1 441 930 -5816 * 7022 199 29 29 chr4 183779744 183781457 -18546890 + L1M4 LINE L1 1167 2879 -3970 1689 157 44 0 chr4 183781457 183781750 -18546597 + L1PA15 LINE L1 5854 6159 -6 8156 216 50 10 chr4 183781769 183783895 -18544452 + L1M4 LINE L1 2844 5055 -1793 * 9687 209 124 17 chr4 183783882 183784255 -18544092 + L1PA16 LINE L1 2729 3061 -3808 2099 86 0 25 chr4 183784255 183784535 -18543812 + AluY SINE Alu 1 273 -38 9687 209 124 17 chr4 183784535 183787876 -18540471 + L1PA16 LINE L1 3061 6868 -1 11888 143 22 24 chr4 183787877 183789321 -18539026 + LOR1a-int LTR ERV1 3922 5362 -2758 369 0 0 0 chr4 183789321 183789362 -18538985 + (TG)n Simple_repeat Simple_repeat 2 42 0 11888 143 22 24 chr4 183789362 183790064 -18538283 + LOR1a-int LTR ERV1 5362 6064 -2056 546 129 47 0 chr4 183790063 183790148 -18538199 + LOR1a-int LTR ERV1 8030 8118 -2 * 2793 171 19 4 chr4 183790158 183790637 -18537710 + LOR1a LTR ERV1 8 493 -4 11580 242 34 22 chr4 183790643 183795150 -18533197 + L1PA16 LINE L1 1986 6625 -257 3950 159 38 7 chr4 183795260 183795994 -18532353 - Tigger2 DNA MER2_type -1961 757 1 929 353 23 31 chr4 183795995 183796511 -18531836 - ERVL LTR ERVL -3252 2512 2001 427 331 63 54 chr4 183796560 183796989 -18531358 - ERVL LTR ERVL -3774 1880 1448 910 204 156 51 chr4 183797225 183797559 -18530788 - MER93b LTR ERV1 0 373 5 2452 66 0 19 chr4 183798859 183799176 -18529171 - AluY SINE Alu 0 311 1 199 340 97 11 chr4 183800852 183801037 -18527310 - MIR SINE MIR -6 256 56 2261 119 0 0 chr4 183802710 183803021 -18525326 - AluSx SINE Alu -1 311 1 1260 218 16 22 chr4 183803406 183803718 -18524629 + AluJo SINE Alu 3 312 0 530 344 0 44 chr4 183804771 183805088 -18523259 + L1MCb LINE L1 77 379 -5666 546 257 113 46 chr4 183805195 183805463 -18522884 + L1MCb LINE L1 1642 1902 -4662 1754 119 40 40 chr4 183805463 183805765 -18522582 + AluSq SINE Alu 1 302 -11 546 257 113 46 chr4 183805765 183805935 -18522412 + L1MCb LINE L1 1902 2059 -4505 256 283 88 39 chr4 183807428 183807633 -18520714 - HAL1b LINE L1 -971 377 163 318 288 38 68 chr4 183807904 183808036 -18520311 - L1MC4a LINE L1 -1928 5949 5822 22 35 0 0 chr4 183808041 183808070 -18520277 + AT_rich Low_complexity Low_complexity 1 29 0 358 290 43 16 chr4 183808079 183808228 -18520119 - L1MC4a LINE L1 -470 5720 5575 2495 145 124 0 chr4 183808703 183809171 -18519176 - MER1A DNA MER1_type 0 527 2 22 0 0 0 chr4 183809746 183809768 -18518579 + AT_rich Low_complexity Low_complexity 1 22 0 230 273 65 54 chr4 183809924 183810202 -18518145 - L1MC4a LINE L1 -2789 3426 3146 305 111 37 0 chr4 183810204 183810258 -18518089 - Alu SINE Alu -7 295 240 1296 200 4 4 chr4 183810259 183810499 -18517848 + HUERS-P3 LTR ERV1 2881 3120 -5799 223 341 62 28 chr4 183811263 183811442 -18516905 - L2 LINE L2 -16 3297 3113 7061 215 37 11 chr4 183811736 183814248 -18514099 - L1MA9 LINE L1 -12 6279 3682 2122 104 28 0 chr4 183814263 183814550 -18513797 - AluY SINE Alu -16 295 1 925 314 71 14 chr4 183814575 183815265 -18513082 - L1MC4a LINE L1 -3098 3117 2389 321 311 94 33 chr4 183815309 183815640 -18512707 - L1MC4a LINE L1 -4023 2373 2023 323 283 131 21 chr4 183817284 183817475 -18510872 + MIR SINE MIR 50 261 -1 3140 220 31 27 chr4 183818433 183818974 -18509373 - L1MB8 LINE L1 -6 6172 5624 2050 118 21 56 chr4 183818974 183819347 -18509000 + THE1B LTR MaLR 4 363 -1 3140 220 31 27 chr4 183819347 183819631 -18508716 - L1MB8 LINE L1 -554 5624 5343 2706 140 21 23 chr4 183819643 183820253 -18508094 + MER4E LTR ERV1 1 765 -1 1451 212 83 18 chr4 183820254 183820640 -18507707 + LTR52 LTR ERVL 9 419 -2 1716 237 106 59 chr4 183820719 183821416 -18506931 + LTR52-int LTR ERVL 825 1554 -2002 617 195 0 0 chr4 183821506 183821629 -18506718 - FLAM_A SINE Alu 0 142 20 920 243 28 5 chr4 183821632 183822052 -18506295 + LTR52-int LTR ERVL 1682 2078 -1478 980 234 127 4 chr4 183822161 183822405 -18505942 + LTR52-int LTR ERVL 2248 2521 -1035 786 254 109 5 chr4 183822436 183822637 -18505710 + LTR52-int LTR ERVL 2572 2793 -2892 454 214 92 0 chr4 183822638 183822736 -18505611 - LTR52-int LTR ERVL -1173 2383 2277 1919 282 54 22 chr4 183822751 183823304 -18505043 + LTR52-int LTR ERVL 2986 3556 0 729 214 114 75 chr4 183823306 183823614 -18504733 + LTR52 LTR ERVL 4 323 -98 683 276 0 11 chr4 183823688 183823869 -18504478 + MER8 DNA MER2_type 1 179 -60 841 205 87 38 chr4 183823910 183824215 -18504132 - MLT1A1 LTR MaLR -34 331 1 3499 253 102 19 chr4 183824215 183824237 -18504110 - L1MB8 LINE L1 -817 5329 5310 2266 104 0 0 chr4 183824237 183824534 -18503813 + AluSg1 SINE Alu 1 297 -12 3499 253 102 19 chr4 183824534 183824701 -18503646 - L1MB8 LINE L1 -836 5310 5158 255 31 0 0 chr4 183824701 183824733 -18503614 + (TG)n Simple_repeat Simple_repeat 2 33 0 3499 253 102 19 chr4 183824733 183825979 -18502368 - L1MB8 LINE L1 -988 5158 3775 658 295 74 26 chr4 183825991 183826303 -18502044 - L1MB8 LINE L1 -2605 3541 3215 2804 229 80 66 chr4 183826328 183827118 -18501229 - MER21B LTR ERV1 -49 814 14 1263 215 4 109 chr4 183827144 183827331 -18501016 - L1MB8 LINE L1 -2930 3216 3011 2108 105 3 10 chr4 183827331 183827625 -18500722 + AluSq SINE Alu 1 292 -21 1263 215 4 109 chr4 183827625 183827968 -18500379 - L1MB8 LINE L1 -3135 3011 2742 756 256 127 57 chr4 183827966 183828673 -18499674 - L1M4 LINE L1 -4069 2756 2000 * 338 114 43 43 chr4 183828673 183828743 -18499604 - MER4D LTR ERV1 0 903 834 556 201 93 0 chr4 183828753 183828892 -18499455 + L1M4c LINE L1 1359 1510 -4874 3219 171 16 43 chr4 183828902 183829333 -18499014 - MER4D LTR ERV1 -68 835 427 2032 197 49 7 chr4 183829333 183829744 -18498603 + MSTA LTR MaLR 1 428 0 3219 171 16 43 chr4 183829744 183829980 -18498367 - MER4D LTR ERV1 -476 427 186 337 188 14 0 chr4 183829975 183830044 -18498303 - MER49 LTR ERV1 -850 73 4 * 2284 232 62 25 chr4 183830062 183830999 -18497348 - L1M4 LINE L1 -4801 1845 879 267 309 115 75 chr4 183831136 183831738 -18496609 - L1M4 LINE L1 -5901 641 16 26 98 0 0 chr4 183831760 183831842 -18496505 + AT_rich Low_complexity Low_complexity 1 82 0 280 248 37 9 chr4 183832072 183832181 -18496166 + MER104 DNA Tc2 6 117 -63 244 233 120 47 chr4 183832245 183832395 -18495952 - L1ME4a LINE L1 -23 6098 5938 313 250 0 31 chr4 183832395 183832491 -18495856 + (CATATA)n Simple_repeat Simple_repeat 6 98 0 12132 149 81 19 chr4 183832491 183834698 -18493649 - Tigger2 DNA MER2_type 0 2718 376 981 152 31 40 chr4 183834693 183834917 -18493430 - Tigger2 DNA MER2_type -2496 222 1 * 234 200 29 14 chr4 183834917 183834987 -18493360 + L1MC4 LINE L1 6625 6695 -1347 12461 170 32 22 chr4 183835195 183836750 -18491597 + Tigger7 DNA MER2_type 1 1591 -896 2266 71 0 0 chr4 183836750 183837068 -18491279 + AluSg SINE Alu 1 318 0 12461 170 32 22 chr4 183837068 183837973 -18490374 + Tigger7 DNA MER2_type 1591 2486 -1 572 306 0 6 chr4 183839845 183840002 -18488345 + MLT1I LTR MaLR 30 185 -224 207 0 0 0 chr4 183840003 183840026 -18488321 + (TG)n Simple_repeat Simple_repeat 2 24 0 3320 170 25 21 chr4 183841971 183842518 -18485829 - L1MA8 LINE L1 -384 5907 5356 1996 110 43 0 chr4 183842518 183842800 -18485547 - AluSp SINE Alu -19 294 1 3320 170 25 21 chr4 183842800 183842904 -18485443 - L1MA8 LINE L1 -935 5356 5254 1781 161 66 17 chr4 183842914 183843262 -18485085 + L1MA7 LINE L1 5906 6270 -21 184 167 0 0 chr4 183844152 183844182 -18484165 + L2 LINE L2 3274 3303 -10 300 282 27 27 chr4 183844493 183844603 -18483744 - MLT1F1 LTR MaLR -444 123 14 21 0 0 0 chr4 183844988 183845009 -18483338 + AT_rich Low_complexity Low_complexity 1 21 0 1212 201 91 74 chr4 183846413 183846807 -18481540 - MER57A LTR ERV1 -2 401 1 1902 167 0 0 chr4 183847387 183847693 -18480654 - AluSx SINE Alu 0 312 7 30 27 0 0 chr4 183847864 183847901 -18480446 + AT_rich Low_complexity Low_complexity 1 37 0 185 343 0 0 chr4 183847988 183848061 -18480286 - MIR SINE MIR -18 244 172 1111 182 58 16 chr4 183848165 183848407 -18479940 - LTR43 LTR ERV1 -141 461 210 6240 86 21 5 chr4 183848411 183849556 -18478791 - L1PA10 LINE L1 -5 6163 5001 13491 137 13 55 chr4 183849558 183852834 -18475513 - L1P LINE L1 -997 5149 1963 5136 148 18 9 chr4 183853992 183855742 -18472605 - L1PA16 LINE L1 -9 6157 4408 306 0 0 0 chr4 183855742 183855776 -18472571 + (TG)n Simple_repeat Simple_repeat 1 34 0 881 272 9 25 chr4 183855835 183856159 -18472188 - L1 LINE L1 -3175 2971 2653 43 35 0 0 chr4 183856201 183856258 -18472089 + AT_rich Low_complexity Low_complexity 1 57 0 1504 197 17 17 chr4 183856380 183856669 -18471678 + AluJo SINE Alu 1 289 -23 225 235 59 24 chr4 183857478 183857563 -18470784 + L1MC/D LINE L1 5579 5666 -2142 1430 252 108 15 chr4 183857652 183858125 -18470222 + MLT2B1 LTR ERVL 4 520 0 691 193 130 0 chr4 183859183 183859344 -18469003 - L1 LINE L1 -1875 4271 4090 767 240 35 0 chr4 183859352 183859523 -18468824 - L1 LINE L1 -2266 3880 3704 1522 171 3 35 chr4 183859526 183859813 -18468534 + AluJo SINE Alu 24 301 -11 2147 244 56 6 chr4 183859829 183860522 -18467825 - L1 LINE L1 -2946 3200 2473 3244 174 23 68 chr4 183860527 183861296 -18467051 + L1MB1 LINE L1 5405 6139 -50 2024 145 52 0 chr4 183862236 183862581 -18465766 - MER47A DNA MER2_type 0 366 4 4174 237 34 12 chr4 183863968 183864350 -18463997 - MER45B DNA AcHobo -541 1040 668 2729 163 29 8 chr4 183864350 183864835 -18463512 + LOR1a LTR ERV1 1 495 -2 4174 237 34 12 chr4 183864835 183865467 -18462880 - MER45B DNA AcHobo -913 668 4 799 281 39 34 chr4 183865829 183866214 -18462133 - L1ME LINE L1 -421 5745 5359 978 248 56 70 chr4 183866224 183866585 -18461762 + MER76 LTR ERV 12 425 -263 2178 116 3 0 chr4 183866585 183866888 -18461459 + AluSx SINE Alu 1 304 -8 978 248 56 70 chr4 183866888 183867119 -18461228 + MER76 LTR ERV 425 658 -30 1282 135 4 69 chr4 183867126 183867197 -18461150 - MER2 DNA MER2_type 0 345 271 2415 61 0 6 chr4 183867197 183867509 -18460838 + AluY SINE Alu 1 310 -1 1282 135 4 69 chr4 183867509 183867682 -18460665 - MER2 DNA MER2_type -74 271 117 573 224 9 0 chr4 183868238 183868345 -18460002 - MER2 DNA MER2_type -231 114 7 840 257 117 38 chr4 183868362 183868814 -18459533 - L1ME LINE L1 -795 5351 4864 26 0 0 0 chr4 183869351 183869377 -18458970 + AT_rich Low_complexity Low_complexity 1 26 0 1534 188 24 3 chr4 183870123 183870410 -18457937 - AluJb SINE Alu -19 293 1 813 104 0 0 chr4 183870561 183870667 -18457680 - AluY SINE Alu -22 289 184 2109 119 3 3 chr4 183870884 183871177 -18457170 - AluSx SINE Alu -17 295 3 620 301 81 62 chr4 183871414 183871959 -18456388 - MER34B LTR ERV1 -10 555 1 285 310 138 9 chr4 183872120 183872236 -18456111 + L2 LINE L2 3141 3271 -1 2284 153 15 8 chr4 183872480 183872880 -18455467 + MER57A LTR ERV1 1 403 0 242 353 76 42 chr4 183873011 183873130 -18455217 + L2 LINE L2 3134 3256 -16 23 33 0 0 chr4 183874025 183874055 -18454292 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 183874247 183874268 -18454079 + AT_rich Low_complexity Low_complexity 1 21 0 1378 164 27 31 chr4 183874417 183874709 -18453638 - AluJo SINE Alu -21 291 1 2062 174 36 55 chr4 183874751 183874851 -18453496 - MER66B LTR ERV1 -2 484 384 2176 97 7 3 chr4 183874851 183875141 -18453206 - AluSx SINE Alu -21 291 1 2062 174 36 55 chr4 183875141 183875533 -18452814 - MER66B LTR ERV1 -102 384 1 946 223 32 28 chr4 183875675 183875957 -18452390 - MER34 LTR ERV1 -4 538 256 12277 30 0 1 chr4 183876032 183878267 -18450080 - L1PA2 LINE L1 -4 6151 3919 6166 56 0 1 chr4 183878271 183879080 -18449267 + L1PA2 LINE L1 3114 3921 -2225 886 243 40 4 chr4 183879080 183879306 -18449041 - MER34 LTR ERV1 -308 234 1 233 208 13 0 chr4 183879773 183879850 -18448497 + (TA)n Simple_repeat Simple_repeat 1 78 0 244 343 39 0 chr4 183880015 183880117 -18448230 - MIR3 SINE MIR -45 163 58 204 311 33 0 chr4 183881271 183881332 -18447015 + L2 LINE L2 3149 3211 -61 1320 228 99 60 chr4 183882449 183882935 -18445412 + MLT1D LTR MaLR 1 505 0 232 336 88 22 chr4 183883037 183883174 -18445173 + MIR SINE MIR 31 176 -86 789 192 58 11 chr4 183883794 183884010 -18444337 + MER61D LTR ERV1 269 425 0 4133 280 28 38 chr4 183884030 183885299 -18443048 + MER61D-int LTR ERV1 34 1286 -5710 2691 143 24 30 chr4 183885299 183885794 -18442553 - LTR22B LTR ERVK 0 492 1 4133 280 28 38 chr4 183885794 183886007 -18442340 + MER61D-int LTR ERV1 1286 1500 -5496 3048 228 8 2 chr4 183886004 183886606 -18441741 + MER61D-int LTR ERV1 2515 3120 -5799 * 2118 194 57 34 chr4 183886709 183887203 -18441144 - LTR22 LTR ERVK -4 505 1 23 0 0 0 chr4 183887571 183887594 -18440753 + AT_rich Low_complexity Low_complexity 1 23 0 26 82 0 0 chr4 183887714 183887775 -18440572 + AT_rich Low_complexity Low_complexity 1 61 0 213 366 18 18 chr4 183887890 183888002 -18440345 - L2 LINE L2 -16 3297 3186 7368 211 35 19 chr4 183888426 183890981 -18437366 - L1MA9 LINE L1 -38 6274 3681 1302 136 0 15 chr4 183890995 183891194 -18437153 - AluSg/x SINE Alu -18 294 99 28 29 0 0 chr4 183892146 183892181 -18436166 + AT_rich Low_complexity Low_complexity 1 35 0 22 80 0 0 chr4 183892517 183892567 -18435780 + AT_rich Low_complexity Low_complexity 1 50 0 830 188 89 14 chr4 183892640 183892853 -18435494 - L1MA9 LINE L1 -1 6311 6083 274 257 54 0 chr4 183893610 183893684 -18434663 + L2 LINE L2 3236 3313 0 24 0 0 0 chr4 183894945 183894969 -18433378 + AT_rich Low_complexity Low_complexity 1 24 0 255 204 0 0 chr4 183895011 183895065 -18433282 + (CATA)n Simple_repeat Simple_repeat 3 56 0 486 324 65 19 chr4 183896057 183896273 -18432074 - MIR SINE MIR -8 254 29 1445 171 23 4 chr4 183896280 183896538 -18431809 - AluSq SINE Alu -50 263 1 386 336 80 31 chr4 183897131 183897679 -18430668 + L1ME LINE L1 3663 4237 -1909 23 0 0 0 chr4 183897723 183897746 -18430601 + AT_rich Low_complexity Low_complexity 1 23 0 418 242 156 38 chr4 183897817 183898028 -18430319 + L1ME LINE L1 5513 5748 -414 221 132 38 38 chr4 183898070 183898123 -18430224 + A-rich Low_complexity Low_complexity 3 55 0 235 316 53 41 chr4 183898494 183898665 -18429682 + L1ME LINE L1 5508 5680 -490 1167 254 66 62 chr4 183899459 183899958 -18428389 - MLT2B1 LTR ERVL -19 501 1 2537 239 57 16 chr4 183900370 183901176 -18427171 + Charlie1 DNA MER1_type 1564 2402 -359 204 222 0 0 chr4 183901191 183901245 -18427102 + (TA)n Simple_repeat Simple_repeat 2 55 0 486 297 78 65 chr4 183901246 183901643 -18426704 - MLT1J LTR MaLR -38 473 72 578 321 57 14 chr4 183901673 183901882 -18426465 + MIR SINE MIR 35 252 -10 26 0 0 0 chr4 183903075 183903101 -18425246 + AT_rich Low_complexity Low_complexity 1 26 0 1860 138 26 60 chr4 183903335 183903684 -18424663 + MER1B DNA MER1_type 1 337 0 3016 98 42 0 chr4 183905562 183905989 -18422358 + MLT2A2 LTR ERVL 1 445 -8 532 158 139 0 chr4 183905997 183906098 -18422249 - FRAM SINE Alu -49 127 13 294 287 26 0 chr4 183907336 183907451 -18420896 + (TA)n Simple_repeat Simple_repeat 2 119 0 247 197 82 16 chr4 183907679 183907740 -18420607 + Tigger3(Golem) DNA MER2_type 4 68 -2961 1812 155 26 63 chr4 183907742 183907882 -18420465 + MER1B DNA MER1_type 4 148 -2564 2335 71 3 0 chr4 183907882 183908177 -18420170 - AluY SINE Alu -13 298 3 2204 100 3 7 chr4 183908179 183908480 -18419867 - AluSx SINE Alu -12 300 1 1812 155 26 63 chr4 183908480 183908685 -18419662 + MER1B DNA MER1_type 149 339 0 723 201 14 0 chr4 183908689 183908828 -18419519 + Tigger3(Golem) DNA MER2_type 66 206 -2823 3783 133 49 14 chr4 183908830 183909489 -18418858 + Tigger3(Golem) DNA MER2_type 2348 3029 0 320 370 67 24 chr4 183909593 183909847 -18418500 - HAL1b LINE L1 -650 698 434 26 0 0 0 chr4 183909896 183909922 -18418425 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr4 183912282 183912307 -18416040 + AT_rich Low_complexity Low_complexity 1 25 0 256 326 0 31 chr4 183913362 183913460 -18414887 + MIR SINE MIR 4 98 -164 435 298 75 119 chr4 183913512 183913889 -18414458 + L2 LINE L2 2806 3155 -158 195 100 0 0 chr4 183913889 183913919 -18414428 + (TATATG)n Simple_repeat Simple_repeat 2 31 0 435 298 75 119 chr4 183913919 183914072 -18414275 + L2 LINE L2 3155 3313 0 215 222 0 0 chr4 183914899 183914944 -18413403 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 220 282 0 0 chr4 183915057 183915128 -18413219 + T-rich Low_complexity Low_complexity 1 71 0 1580 165 121 57 chr4 183915147 183915491 -18412856 - MSTA LTR MaLR -2 426 106 1671 151 59 48 chr4 183915491 183915787 -18412560 + THE1C LTR MaLR 1 303 -72 2018 116 21 0 chr4 183915787 183915944 -18412403 - AluSq SINE Alu -23 290 123 189 0 0 0 chr4 183915944 183915965 -18412382 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2018 116 21 0 chr4 183915965 183916091 -18412256 - AluSq SINE Alu -190 123 1 1671 151 59 48 chr4 183916091 183916165 -18412182 + THE1C LTR MaLR 303 375 0 1580 165 121 57 chr4 183916165 183916207 -18412140 - MSTA LTR MaLR -322 106 15 1809 154 49 38 chr4 183916215 183916585 -18411762 + THE1C LTR MaLR 2 375 0 344 140 0 0 chr4 183916591 183916641 -18411706 - MSTA LTR MaLR -376 52 3 647 379 40 39 chr4 183917268 183917944 -18410403 - L2 LINE L2 -1953 1361 685 255 398 10 0 chr4 183918159 183918257 -18410090 + MIR SINE MIR 42 140 -68 596 306 119 30 chr4 183918925 183919294 -18409053 - L2 LINE L2 -921 2393 1992 2571 102 11 8 chr4 183919893 183920267 -18408080 - THE1C LTR MaLR 0 375 1 1855 148 0 109 chr4 183920357 183920734 -18407613 - MER1B DNA MER1_type -1 336 1 323 200 0 12 chr4 183921023 183921108 -18407239 + GA-rich Low_complexity Low_complexity 2 85 0 26 30 0 0 chr4 183921543 183921576 -18406771 + AT_rich Low_complexity Low_complexity 1 33 0 38 51 0 0 chr4 183921728 183921787 -18406560 + AT_rich Low_complexity Low_complexity 1 59 0 4169 152 26 31 chr4 183922240 183923018 -18405329 + LTR1 LTR ERV1 12 785 0 1356 183 151 11 chr4 183923162 183923441 -18404906 + HUERS-P2 LTR ERV1 204 521 -2567 443 267 37 80 chr4 183923558 183923745 -18404602 + MER8 DNA MER2_type 1 179 -60 366 206 0 0 chr4 183923720 183923783 -18404564 + MER2 DNA MER2_type 282 344 -1 * 719 154 37 37 chr4 183923864 183924000 -18404347 + AluJo SINE Alu 1 136 -176 302 200 33 0 chr4 183924012 183924072 -18404275 + MIR SINE MIR 20 81 -181 2123 118 142 6 chr4 183924227 183924593 -18403754 + MSTA LTR MaLR 1 416 -12 266 88 100 125 chr4 183924557 183924637 -18403710 + LTR66 LTR ERVL 363 440 -170 * 303 196 0 0 chr4 183924639 183924695 -18403652 - L1MC4 LINE L1 -1339 6703 6648 190 250 0 0 chr4 183925320 183925364 -18402983 - MIR3 SINE MIR -6 202 159 1182 120 15 55 chr4 183925827 183926027 -18402320 + AluJb SINE Alu 3 194 -118 204 214 0 0 chr4 183926168 183926210 -18402137 + GA-rich Low_complexity Low_complexity 1 42 0 399 265 49 0 chr4 183926640 183926742 -18401605 - MIR SINE MIR -70 192 86 500 287 99 5 chr4 183927002 183927204 -18401143 - MIR SINE MIR -28 234 14 7156 187 37 30 chr4 183927363 183929402 -18398945 + HUERS-P2 LTR ERV1 390 2665 -1273 1803 142 10 26 chr4 183929403 183929713 -18398634 + LTR1 LTR ERV1 481 785 0 1310 199 78 14 chr4 183929823 183930105 -18398242 - AluJb SINE Alu -12 300 1 279 336 0 0 chr4 183930978 183931082 -18397265 + L1 LINE L1 4065 4168 -1978 21 0 0 0 chr4 183931156 183931177 -18397170 + AT_rich Low_complexity Low_complexity 1 21 0 1512 257 12 3 chr4 183931192 183931531 -18396816 - MER77 LTR ERV1 0 605 264 207 303 22 34 chr4 183931664 183931691 -18396656 - L2 LINE L2 -1 3312 3286 5650 9 3 0 chr4 183931691 183932331 -18396016 + L1PA2 LINE L1 5514 6155 0 207 303 22 34 chr4 183932331 183932392 -18395955 - L2 LINE L2 -27 3286 3225 195 241 17 35 chr4 183932554 183932612 -18395735 - L2 LINE L2 -12 3260 3204 25 31 0 0 chr4 183932712 183932744 -18395603 + AT_rich Low_complexity Low_complexity 1 32 0 229 229 168 38 chr4 183932928 183933059 -18395288 - MER5C DNA MER1_type 0 324 177 321 26 0 0 chr4 183933264 183933302 -18395045 + (TG)n Simple_repeat Simple_repeat 2 39 0 342 0 0 0 chr4 183933322 183933360 -18394987 + (TC)n Simple_repeat Simple_repeat 2 39 0 216 0 0 0 chr4 183933359 183933383 -18394964 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 911 310 211 17 chr4 183933665 183933685 -18394662 - L2 LINE L2 0 3313 3298 1899 136 31 45 chr4 183933685 183933798 -18394549 - MER7A DNA MER2_type -2692 346 233 2155 132 0 0 chr4 183933798 183934109 -18394238 - AluSx SINE Alu -1 311 1 1899 136 31 45 chr4 183934109 183934348 -18393999 - MER7A DNA MER2_type -2805 233 1 911 310 211 17 chr4 183934348 183935180 -18393167 - L2 LINE L2 -15 3298 2291 264 271 74 41 chr4 183935794 183935916 -18392431 + L2 LINE L2 3188 3313 0 2298 82 9 29 chr4 183936060 183936375 -18391972 - AluY SINE Alu -2 309 1 588 312 40 21 chr4 183937769 183938084 -18390263 - MLT1H LTR MaLR -221 328 5 290 336 81 17 chr4 183938908 183939390 -18388957 + L1M4 LINE L1 3519 4031 -2115 207 205 26 39 chr4 183939505 183939554 -18388793 + (TAGA)n Simple_repeat Simple_repeat 2 51 -27 2003 134 13 0 chr4 183939554 183939852 -18388495 + AluSg SINE Alu 1 302 -8 207 205 26 39 chr4 183939852 183939880 -18388467 + (TAGA)n Simple_repeat Simple_repeat 51 78 0 250 298 38 30 chr4 183940173 183940304 -18388043 + L1M4 LINE L1 4456 4587 -1559 26 50 0 0 chr4 183940318 183940358 -18387989 + AT_rich Low_complexity Low_complexity 1 40 0 1692 216 0 40 chr4 183940751 183941126 -18387221 + MLT1A1 LTR MaLR 6 365 0 21 0 0 0 chr4 183941743 183941764 -18386583 + AT_rich Low_complexity Low_complexity 1 21 0 2217 104 0 22 chr4 183941960 183942277 -18386070 + AluSx SINE Alu 1 310 -2 25 31 0 0 chr4 183943332 183943364 -18384983 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr4 183943463 183943491 -18384856 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr4 183943535 183943562 -18384785 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr4 183943625 183943655 -18384692 + AT_rich Low_complexity Low_complexity 1 30 0 36 40 0 0 chr4 183943834 183943884 -18384463 + AT_rich Low_complexity Low_complexity 1 50 0 346 295 186 11 chr4 183944177 183944360 -18383987 - L2 LINE L2 0 3313 3099 435 318 66 14 chr4 183944491 183944702 -18383645 - L1M4b LINE L1 -6626 233 12 1338 217 101 72 chr4 183945384 183945867 -18382480 + MLT2B1 LTR ERVL 5 501 -19 26 64 0 0 chr4 183946577 183946624 -18381723 + AT_rich Low_complexity Low_complexity 1 47 0 294 268 42 0 chr4 183946696 183946767 -18381580 + MIR SINE MIR 74 147 -61 497 272 30 47 chr4 183949084 183949253 -18379094 + MER5B DNA MER1_type 13 178 0 491 250 201 7 chr4 183949273 183949417 -18378930 - MER5A DNA MER1_type 0 189 18 26 0 0 0 chr4 183951083 183951109 -18377238 + AT_rich Low_complexity Low_complexity 1 26 0 279 0 0 0 chr4 183951696 183951727 -18376620 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 601 195 8 8 chr4 183951729 183951852 -18376495 - L1PA16 LINE L1 -33 6133 6011 1539 235 37 97 chr4 183951868 183952519 -18375828 - LTR9 LTR ERV1 0 612 1 344 211 42 0 chr4 183952518 183952589 -18375758 + L1ME3A LINE L1 226 299 -6085 * 494 280 130 28 chr4 183952590 183952980 -18375367 + L1ME3A LINE L1 3354 3774 -2608 349 314 21 26 chr4 183952985 183953176 -18375171 + L1ME3A LINE L1 3822 4011 -2371 1180 288 86 39 chr4 183953260 183954006 -18374341 + L1ME3A LINE L1 5612 6392 -14 376 334 129 20 chr4 183954533 183954835 -18373512 + L2 LINE L2 2413 2747 -567 1224 240 33 0 chr4 183954835 183955110 -18373237 + L1M4c LINE L1 20 303 -6081 312 231 122 96 chr4 183955241 183955397 -18372950 + LTR33 LTR ERVL 360 519 -2 491 296 58 9 chr4 183955505 183955731 -18372616 - L1ME LINE L1 -356 5765 5529 293 214 0 29 chr4 183956362 183956432 -18371915 + MIR SINE MIR 190 257 -5 837 328 85 56 chr4 183956557 183957008 -18371339 - L2 LINE L2 0 3313 2832 1687 51 51 0 chr4 183957008 183957225 -18371122 + AluY SINE Alu 1 228 -83 837 328 85 56 chr4 183957225 183957376 -18370971 - L2 LINE L2 -481 2832 2687 694 289 80 74 chr4 183957536 183957904 -18370443 - L2 LINE L2 -940 2374 2001 2932 130 43 0 chr4 183957904 183958390 -18369957 + L1MA5A LINE L1 5791 6297 0 694 289 80 74 chr4 183958390 183958495 -18369852 - L2 LINE L2 -1313 2001 1898 2599 137 42 24 chr4 183958503 183959007 -18369340 - L1MA7 LINE L1 -10 6281 5769 1320 186 55 12 chr4 183959009 183959262 -18369085 - AluSx SINE Alu 0 312 49 1608 185 10 0 chr4 183959262 183959554 -18368793 - L1MA7 LINE L1 -511 5780 5486 687 125 55 0 chr4 183959552 183959680 -18368667 + L1MA7 LINE L1 5346 5480 -854 * 1276 319 212 12 chr4 183959681 183960717 -18367630 - L2 LINE L2 -1405 1909 666 14479 138 27 9 chr4 183962083 183962109 -18366238 - Tigger1 DNA MER2_type -6 2412 2388 2062 118 7 0 chr4 183962109 183962398 -18365949 + AluSx SINE Alu 1 291 -21 14479 138 27 9 chr4 183962398 183964740 -18363607 - Tigger1 DNA MER2_type -30 2388 1 34 42 0 0 chr4 183965514 183965562 -18362785 + AT_rich Low_complexity Low_complexity 1 48 0 3906 129 60 37 chr4 183966189 183966884 -18361463 - MER50 LTR ERV1 -23 711 1 358 290 0 0 chr4 183966981 183967074 -18361273 + MLT1J2 LTR MaLR 347 439 -11 280 303 141 7 chr4 183967075 183967217 -18361130 + MIR SINE MIR 32 192 -70 2250 102 0 13 chr4 183967505 183967818 -18360529 - AluSg SINE Alu -1 309 1 26 0 0 0 chr4 183968178 183968204 -18360143 + AT_rich Low_complexity Low_complexity 1 26 0 3162 34 11 0 chr4 183968204 183968586 -18359761 + L1PA3 LINE L1 5770 6155 0 295 338 76 35 chr4 183968634 183968832 -18359515 - L3 LINE CR1 -101 1476 1271 244 250 73 21 chr4 183969570 183969666 -18358681 - L1ME LINE L1 -340 5781 5681 2169 117 0 7 chr4 183969682 183970015 -18358332 - AluSx SINE Alu 0 312 1 24 53 0 0 chr4 183970129 183970167 -18358180 + AT_rich Low_complexity Low_complexity 1 38 0 280 261 145 75 chr4 183970327 183970844 -18357503 + HAL1b LINE L1 793 1345 -3 21 0 0 0 chr4 183971359 183971380 -18356967 + AT_rich Low_complexity Low_complexity 1 21 0 459 123 55 0 chr4 183971652 183971815 -18356532 + (TA)n Simple_repeat Simple_repeat 1 172 0 1355 166 64 64 chr4 183972514 183972840 -18355507 + L1MA6 LINE L1 5975 6300 0 341 295 0 0 chr4 183972978 183973083 -18355264 + (TA)n Simple_repeat Simple_repeat 1 105 0 195 222 0 0 chr4 183973304 183973349 -18354998 + A-rich Low_complexity Low_complexity 1 45 0 195 296 98 45 chr4 183974717 183974849 -18353498 - L2 LINE L2 -529 2785 2647 34 0 0 0 chr4 183974854 183974888 -18353459 + AT_rich Low_complexity Low_complexity 1 34 0 2081 149 118 3 chr4 183975022 183975404 -18352943 + MSTA LTR MaLR 1 426 -2 281 362 26 9 chr4 183975431 183975547 -18352800 + MIR SINE MIR 29 146 -62 1877 125 6 45 chr4 183975555 183975867 -18352480 - AluSc SINE Alu -9 300 1 1500 210 42 36 chr4 183976618 183977003 -18351344 + MLT1B LTR MaLR 4 390 0 2335 58 0 26 chr4 183977143 183977455 -18350892 + AluY SINE Alu 8 311 0 25 31 0 0 chr4 183978871 183978903 -18349444 + AT_rich Low_complexity Low_complexity 1 32 0 330 323 45 8 chr4 183979712 183979845 -18348502 + MIR3 SINE MIR 59 196 -12 255 61 0 0 chr4 183980211 183980244 -18348103 + (TG)n Simple_repeat Simple_repeat 1 33 0 736 172 16 0 chr4 183980562 183980690 -18347657 + FLAM_C SINE Alu 2 131 -2 594 272 154 29 chr4 183980737 183981016 -18347331 + MLT1J2 LTR MaLR 113 426 -24 450 94 0 0 chr4 183983303 183983367 -18344980 + (TTC)n Simple_repeat Simple_repeat 3 66 0 1076 240 85 4 chr4 183983369 183983529 -18344818 - AluJo SINE Alu -8 294 148 249 57 0 0 chr4 183983529 183983564 -18344783 + (TG)n Simple_repeat Simple_repeat 2 36 0 1076 240 85 4 chr4 183983564 183983674 -18344673 - AluJo SINE Alu -154 148 2 2073 106 0 18 chr4 183984783 183985104 -18343243 - AluSp SINE Alu 0 322 7 2240 91 0 3 chr4 183985930 183986226 -18342121 - AluSg SINE Alu -15 295 1 183 129 0 0 chr4 183987246 183987277 -18341070 + (A)n Simple_repeat Simple_repeat 1 31 0 1633 158 14 7 chr4 183988759 183989037 -18339310 - AluSx SINE Alu -22 290 11 336 313 36 36 chr4 183989439 183989717 -18338630 + L1ME2 LINE L1 3177 3454 -2692 3518 247 91 33 chr4 183989752 183991838 -18336509 + L1ME2 LINE L1 3532 5837 -327 1994 134 0 20 chr4 183991838 183992143 -18336204 + AluSc SINE Alu 1 299 -10 3518 247 91 33 chr4 183992143 183992440 -18335907 + L1ME2 LINE L1 5837 6115 -49 856 246 54 36 chr4 183992574 183992907 -18335440 + L1ME2 LINE L1 5811 6149 -15 2688 10 0 0 chr4 183992923 183993221 -18335126 - AluYa5 SINE Alu -13 298 1 1067 260 132 27 chr4 183993236 183993751 -18334596 + L1ME2 LINE L1 5295 5863 -301 630 237 53 21 chr4 183993761 183993951 -18334396 + L1ME2 LINE L1 5935 6130 -34 266 326 99 14 chr4 183994172 183994525 -18333822 + L1MC/D LINE L1 4759 5141 -1005 613 299 57 44 chr4 183994620 183994714 -18333633 + L1MC/D LINE L1 5337 5428 -2380 1756 150 0 41 chr4 183994714 183995032 -18333315 + AluSx SINE Alu 1 306 0 613 299 57 44 chr4 183995032 183995254 -18333093 + L1MC/D LINE L1 5428 5658 -2150 22 0 0 0 chr4 183995517 183995539 -18332808 + AT_rich Low_complexity Low_complexity 1 22 0 201 121 0 0 chr4 183995539 183995572 -18332775 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 223 376 40 20 chr4 183995695 183995796 -18332551 - MIR SINE MIR -75 133 31 561 80 0 45 chr4 183997013 183997101 -18331246 + L1PA13 LINE L1 5586 5669 -499 1378 89 0 6 chr4 183997101 183997280 -18331067 + AluSg/x SINE Alu 119 296 -16 3331 96 22 8 chr4 183997281 183997770 -18330577 + L1PA13 LINE L1 5663 6158 -5 4888 120 99 8 chr4 183997792 183998620 -18329727 + MER4D LTR ERV1 1 903 0 24 0 0 0 chr4 183999388 183999412 -18328935 + AT_rich Low_complexity Low_complexity 1 24 0 3767 181 8 17 chr4 183999734 184000451 -18327896 + MER50 LTR ERV1 1 711 -23 199 316 25 13 chr4 184000522 184000601 -18327746 + MIR SINE MIR 76 155 -107 394 280 57 38 chr4 184000861 184001018 -18327329 + MER5A DNA MER1_type 28 187 -2 2362 201 83 54 chr4 184001145 184001810 -18326537 + MER76 LTR ERV 1 684 -4 2072 117 0 0 chr4 184002300 184002615 -18325732 - AluSg SINE Alu 0 315 1 532 221 8 0 chr4 184002870 184002992 -18325355 + MER3 DNA MER1_type 87 209 0 22 0 0 0 chr4 184003225 184003247 -18325100 + AT_rich Low_complexity Low_complexity 1 22 0 252 217 0 0 chr4 184003282 184003328 -18325019 - MER3 DNA MER1_type -163 46 1 2202 122 0 0 chr4 184003775 184004079 -18324268 + AluSq SINE Alu 1 304 -9 26 0 0 0 chr4 184004127 184004153 -18324194 + AT_rich Low_complexity Low_complexity 1 26 0 721 280 37 0 chr4 184004612 184004791 -18323556 + MIR SINE MIR 35 223 -39 2062 127 3 10 chr4 184004791 184005099 -18323248 + AluSg SINE Alu 1 306 -4 713 340 62 0 chr4 184005174 184005480 -18322867 + LTR16A LTR ERVL 105 429 -21 1816 333 65 18 chr4 184005507 184006538 -18321809 + HERV16 LTR ERVL 9 1088 -3908 300 258 34 22 chr4 184006536 184006625 -18321722 + HERV16 LTR ERVL 2679 2768 -2228 * 441 348 60 30 chr4 184006652 184006954 -18321393 + HERV16 LTR ERVL 1098 1408 -3588 1742 295 66 70 chr4 184007056 184009036 -18319311 + HERV16 LTR ERVL 1642 3670 -1956 262 356 46 29 chr4 184009026 184009332 -18319015 + HERV16 LTR ERVL 4625 4935 -829 * 207 250 67 0 chr4 184009748 184009808 -18318539 - MER91C DNA MER1_type -47 93 30 187 367 83 0 chr4 184009837 184009946 -18318401 - MIR SINE MIR -99 163 46 2073 116 0 0 chr4 184011167 184011498 -18316849 + AluSx SINE Alu 1 331 0 23 0 0 0 chr4 184011624 184011647 -18316700 + AT_rich Low_complexity Low_complexity 1 23 0 358 276 97 40 chr4 184011921 184012268 -18316079 - L1MC4a LINE L1 -384 5778 5541 231 88 0 0 chr4 184014986 184015020 -18313327 + (TTG)n Simple_repeat Simple_repeat 2 35 0 2061 150 0 0 chr4 184015139 184015439 -18312908 + AluSx SINE Alu 1 300 -12 2440 64 0 7 chr4 184016041 184016337 -18312010 - AluY SINE Alu -17 294 1 285 351 126 6 chr4 184016340 184016514 -18311833 - MIR SINE MIR -63 199 5 22 35 0 0 chr4 184016604 184016633 -18311714 + AT_rich Low_complexity Low_complexity 1 29 0 361 263 67 31 chr4 184016650 184016874 -18311473 + L1MC4a LINE L1 5728 5959 -162 23 68 0 0 chr4 184016950 184016994 -18311353 + AT_rich Low_complexity Low_complexity 1 44 0 1588 185 100 12 chr4 184017543 184017884 -18310463 - MLT1B LTR MaLR -19 371 1 22 0 0 0 chr4 184018640 184018662 -18309685 + AT_rich Low_complexity Low_complexity 1 22 0 288 263 113 0 chr4 184019440 184019520 -18308827 + L2 LINE L2 3225 3313 0 310 247 35 12 chr4 184021608 184021693 -18306654 - MLT2F LTR ERVL -4 659 573 363 221 67 29 chr4 184021867 184021971 -18306376 - MLT1E3 LTR MaLR -446 178 71 277 275 88 0 chr4 184021921 184022012 -18306335 - MLT2C1 LTR ERVL -298 99 1 * 228 175 25 0 chr4 184021981 184022021 -18306326 - MLT2F LTR ERVL -620 43 3 * 2275 80 20 0 chr4 184022360 184022661 -18305686 + AluSc SINE Alu 3 309 0 201 121 0 0 chr4 184022921 184022954 -18305393 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 613 252 0 14 chr4 184024495 184024638 -18303709 + L1MD1 LINE L1 21 161 -6379 7198 229 77 73 chr4 184024641 184025815 -18302532 + L1MD1 LINE L1 331 1499 -5041 1874 161 0 0 chr4 184025815 184026100 -18302247 + AluSx SINE Alu 15 299 -13 7198 229 77 73 chr4 184026100 184026909 -18301438 + L1MD1 LINE L1 1499 2304 -4236 3257 151 23 75 chr4 184026909 184027638 -18300709 + LTR8 LTR ERV1 1 691 0 7198 229 77 73 chr4 184027638 184027664 -18300683 + L1MD1 LINE L1 2304 2328 -4212 2165 126 0 0 chr4 184027664 184027965 -18300382 + AluSc SINE Alu 1 301 -8 7198 229 77 73 chr4 184027965 184028331 -18300016 + L1MD1 LINE L1 2328 2691 -3849 2376 104 0 0 chr4 184028331 184028638 -18299709 + AluSx SINE Alu 1 307 -5 7198 229 77 73 chr4 184028638 184029318 -18299029 + L1MD1 LINE L1 2691 3367 -3173 2504 72 0 3 chr4 184029318 184029625 -18298722 + AluY SINE Alu 1 306 -5 7198 229 77 73 chr4 184029625 184030736 -18297611 + L1MD1 LINE L1 3367 4473 -2067 1862 120 39 29 chr4 184030736 184031045 -18297302 + AluSx SINE Alu 1 312 0 7198 229 77 73 chr4 184031045 184032150 -18296197 + L1MD1 LINE L1 4473 5607 -933 328 276 23 0 chr4 184032209 184032296 -18296051 + L1MC4 LINE L1 6614 6702 -1340 1424 207 7 35 chr4 184032299 184032589 -18295758 - AluJo SINE Alu -18 284 3 709 226 11 13 chr4 184032604 184032813 -18295534 + L1MD1 LINE L1 5616 5823 -756 2156 76 0 44 chr4 184032813 184033128 -18295219 + AluSc SINE Alu 1 301 -8 709 226 11 13 chr4 184033128 184033142 -18295205 + L1MD1 LINE L1 5823 5836 -743 7393 178 25 33 chr4 184033160 184035205 -18293142 + L1PA8A LINE L1 3 2085 -4376 19226 118 14 0 chr4 184035205 184039023 -18289324 + L1PA8A LINE L1 2581 6444 -2 2952 178 19 52 chr4 184039049 184039728 -18288619 + L1MD1 LINE L1 5821 6477 -159 1188 213 96 15 chr4 184039751 184040075 -18288272 + MER47A DNA MER2_type 13 362 -4 809 193 12 0 chr4 184040081 184040252 -18288095 + L1MD1 LINE L1 6464 6636 0 913 243 73 0 chr4 184041264 184041482 -18286865 - MIR SINE MIR 0 262 29 1130 210 55 27 chr4 184042128 184042553 -18285794 - MLT1D LTR MaLR 0 505 27 716 249 58 25 chr4 184042602 184042843 -18285504 + MIR SINE MIR 3 251 -11 3064 193 36 24 chr4 184043153 184043302 -18285045 - L1MA10 LINE L1 -8 6326 6180 216 0 0 0 chr4 184043302 184043326 -18285021 + (TTA)n Simple_repeat Simple_repeat 3 26 0 3064 193 36 24 chr4 184043326 184043877 -18284470 - L1MA10 LINE L1 -154 6180 5618 669 224 38 0 chr4 184043893 184044076 -18284271 - L1MA10 LINE L1 -2542 3604 3415 * 1677 187 24 45 chr4 184044073 184044747 -18283600 - L1M2 LINE L1 -698 5614 4955 * 6956 207 39 1 chr4 184044746 184046291 -18282056 + L1M2 LINE L1 3337 4939 -1207 1131 215 114 29 chr4 184047321 184047655 -18280692 + MLT2C1 LTR ERVL 1 478 -42 186 103 0 0 chr4 184047663 184047692 -18280655 + (CA)n Simple_repeat Simple_repeat 2 30 0 655 115 0 10 chr4 184047727 184047823 -18280524 + MER4A LTR ERV1 1 95 -569 1750 150 3 22 chr4 184047826 184048173 -18280174 + MER4A LTR ERV1 261 659 -5 464 48 16 0 chr4 184048173 184048236 -18280111 + (CA)n Simple_repeat Simple_repeat 2 65 0 2135 139 3 0 chr4 184049006 184049316 -18279031 + AluSx SINE Alu 1 311 -1 2076 157 0 0 chr4 184050066 184050378 -18277969 + AluSx SINE Alu 1 312 0 237 259 0 0 chr4 184050412 184050466 -18277881 - MER2 DNA MER2_type -10 335 282 387 247 0 12 chr4 184050475 184050556 -18277791 - MER8 DNA MER2_type -140 99 20 337 319 25 64 chr4 184050562 184050766 -18277581 - MIR SINE MIR -62 200 5 240 35 0 0 chr4 184051878 184051907 -18276440 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr4 184051975 184051996 -18276351 + AT_rich Low_complexity Low_complexity 1 21 0 430 273 16 96 chr4 184053232 184053481 -18274866 + HERVL LTR ERVL 1134 1362 -4292 1342 291 55 24 chr4 184053487 184054178 -18274169 + HERVL LTR ERVL 1852 2589 -3175 3024 303 66 25 chr4 184054225 184055174 -18273173 + HERVL LTR ERVL 2683 3694 -2070 2502 63 0 0 chr4 184055174 184055477 -18272870 + AluY SINE Alu 1 303 -8 3024 303 66 25 chr4 184055477 184055745 -18272602 + HERVL LTR ERVL 3694 3950 -1814 1352 260 166 25 chr4 184055787 184056264 -18272083 + HERVL LTR ERVL 4038 4581 -1183 240 267 40 13 chr4 184056365 184056440 -18271907 - MIR SINE MIR -104 158 82 1888 303 138 6 chr4 184058503 184059408 -18268939 + L2 LINE L2 1949 2973 -341 510 279 12 12 chr4 184060184 184060356 -18267991 + MER69A DNA AcHobo 2 173 -4 461 325 61 14 chr4 184060372 184060652 -18267695 - ERVL LTR ERVL -729 5035 4743 1952 155 38 56 chr4 184061038 184061483 -18266864 - LTR23 LTR ERV1 0 437 1 341 274 0 38 chr4 184061595 184061701 -18266646 + LTR8A LTR ERV1 187 288 -439 2241 67 46 0 chr4 184061712 184061994 -18266353 - AluY SINE Alu -16 295 1 853 242 62 101 chr4 184062036 184062490 -18265857 + LTR8A LTR ERV1 287 722 -5 262 292 117 73 chr4 184062500 184062655 -18265692 + L2 LINE L2 3013 3187 -126 1634 192 3 19 chr4 184062655 184062972 -18265375 - AluJo SINE Alu 0 312 1 262 292 117 73 chr4 184062972 184063090 -18265257 + L2 LINE L2 3187 3298 -15 1989 115 17 3 chr4 184063379 184063667 -18264680 + AluSx SINE Alu 1 292 -20 849 112 0 0 chr4 184065355 184065480 -18262867 + AluSg/x SINE Alu 188 312 0 263 256 94 78 chr4 184066048 184066341 -18262006 + MLT1J1 LTR MaLR 67 368 -78 277 302 93 16 chr4 184069536 184069665 -18258682 + MIR SINE MIR 54 192 -70 647 265 31 52 chr4 184070341 184070665 -18257682 - L1MC4a LINE L1 -1540 6268 5952 1781 106 0 4 chr4 184070952 184071224 -18257123 + AluSq SINE Alu 49 319 0 5846 169 41 14 chr4 184071903 184073986 -18254361 + L1PB3 LINE L1 4003 6147 -7 2108 137 3 0 chr4 184074263 184074569 -18253778 + AluSg SINE Alu 1 307 -3 23 0 0 0 chr4 184074611 184074634 -18253713 + AT_rich Low_complexity Low_complexity 1 23 0 438 216 31 10 chr4 184075968 184076065 -18252282 - L2 LINE L2 -1 3312 3214 8898 115 6 7 chr4 184076107 184077389 -18250958 + HSMAR1 DNA Mariner 7 1287 0 319 223 20 24 chr4 184077539 184077677 -18250670 + L1MC4 LINE L1 1995 6983 -1339 575 343 153 23 chr4 184077805 184078458 -18249889 - L2 LINE L2 -426 2888 2151 205 341 68 0 chr4 184078564 184078652 -18249695 - MER5A DNA MER1_type -70 119 26 395 321 60 76 chr4 184078768 184079331 -18249016 - L2 LINE L2 -467 2847 2294 1954 146 52 22 chr4 184079738 184080102 -18248245 + THE1C LTR MaLR 1 375 0 205 291 0 35 chr4 184080925 184081011 -18247336 + A-rich Low_complexity Low_complexity 4 86 0 365 353 22 0 chr4 184083093 184083232 -18245115 - MIR3 SINE MIR -14 194 53 204 40 0 0 chr4 184084212 184084237 -18244110 + (A)n Simple_repeat Simple_repeat 1 25 0 186 167 0 0 chr4 184084251 184084287 -18244060 + CT-rich Low_complexity Low_complexity 1 36 0 304 369 9 9 chr4 184084396 184084507 -18243840 + MIR SINE MIR 3 113 -149 965 132 3 18 chr4 184184538 184184862 -18143485 + HSATII Satellite Satellite 1 319 -1 1043 104 16 0 chr4 184184892 184185710 -18142637 + HSATII Satellite Satellite 1 831 -8 908 125 11 23 chr4 184185721 184186341 -18142006 + HSATII Satellite Satellite 1 612 -1 998 110 12 12 chr4 184186371 184189873 -18138474 + HSATII Satellite Satellite 1 3504 -16 1007 116 12 15 chr4 184189888 184193885 -18134462 + HSATII Satellite Satellite 1 3985 -1 1052 111 12 14 chr4 184193915 184198716 -18129631 + HSATII Satellite Satellite 1 4793 -2 986 109 11 14 chr4 184198747 184201348 -18126999 + HSATII Satellite Satellite 1 2594 -9 784 125 18 18 chr4 184201379 184201547 -18126800 + HSATII Satellite Satellite 1 168 -2 998 114 12 16 chr4 184201574 184204512 -18123835 + HSATII Satellite Satellite 1 2925 -2 998 110 12 13 chr4 184204543 184210024 -18118323 + HSATII Satellite Satellite 1 5475 -9 790 123 18 18 chr4 184210055 184210225 -18118122 + HSATII Satellite Satellite 1 170 0 940 120 7 17 chr4 184210250 184210945 -18117402 + HSATII Satellite Satellite 1 688 -1 977 114 14 9 chr4 184210975 184213163 -18115184 + HSATII Satellite Satellite 1 2197 -1 986 111 12 13 chr4 184213193 184214938 -18113409 + HSATII Satellite Satellite 1 1744 -1 986 113 14 15 chr4 184214968 184216247 -18112100 + HSATII Satellite Satellite 1 1277 -1 1019 112 14 9 chr4 184216277 184217923 -18110424 + HSATII Satellite Satellite 1 1653 -1 998 106 13 9 chr4 184217953 184219679 -18108668 + HSATII Satellite Satellite 1 1733 -16 986 129 15 20 chr4 184219694 184220114 -18108233 + HSATII Satellite Satellite 1 417 -26 1031 108 8 13 chr4 184220222 184222031 -18106316 + HSATII Satellite Satellite 1 1799 -15 956 115 12 16 chr4 184222045 184223177 -18105170 + HSATII Satellite Satellite 1 1128 -99 998 116 12 13 chr4 184223192 184227170 -18101177 + HSATII Satellite Satellite 1 3973 -1 986 115 12 15 chr4 184227193 184231810 -18096537 + HSATII Satellite Satellite 1 4604 -1 1040 119 12 14 chr4 184231840 184233118 -18095229 + HSATII Satellite Satellite 1 1275 -1 971 110 13 8 chr4 184233148 184234270 -18094077 + HSATII Satellite Satellite 1 1127 -1 1010 124 9 10 chr4 184234293 184235361 -18092986 + HSATII Satellite Satellite 1 1066 -1 944 105 19 8 chr4 184235391 184235771 -18092576 + HSATII Satellite Satellite 1 384 -126 980 105 0 14 chr4 184235878 184236099 -18092248 + HSATII Satellite Satellite 1 217 -9 763 131 18 18 chr4 184236130 184236298 -18092049 + HSATII Satellite Satellite 1 168 -2 956 95 10 11 chr4 184236325 184236857 -18091490 + HSATII Satellite Satellite 1 531 -8 998 114 11 15 chr4 184236887 184239204 -18089143 + HSATII Satellite Satellite 1 2308 -57 1007 107 11 13 chr4 184239244 184241894 -18086453 + HSATII Satellite Satellite 1 2643 -9 730 137 18 18 chr4 184241925 184242093 -18086254 + HSATII Satellite Satellite 1 168 -2 940 109 10 11 chr4 184242120 184242659 -18085688 + HSATII Satellite Satellite 1 538 -1 1010 116 14 12 chr4 184242711 184243946 -18084401 + HSATII Satellite Satellite 1 1237 -2 1043 107 13 3 chr4 184243980 184246206 -18082141 + HSATII Satellite Satellite 1 2248 -1 986 122 11 19 chr4 184246229 184246830 -18081517 + HSATII Satellite Satellite 1 596 -1 947 115 12 13 chr4 184246860 184248606 -18079741 + HSATII Satellite Satellite 1 1744 -1 998 115 12 13 chr4 184248636 184250382 -18077965 + HSATII Satellite Satellite 1 1744 -1 986 111 11 13 chr4 184250412 184253934 -18074413 + HSATII Satellite Satellite 1 3513 -23 965 122 22 9 chr4 184253956 184254245 -18074102 + HSATII Satellite Satellite 1 292 -1 1031 121 13 12 chr4 184254268 184255708 -18072639 + HSATII Satellite Satellite 1 1440 -1 1052 111 11 13 chr4 184255738 184261450 -18066897 + HSATII Satellite Satellite 1 5704 -2 1007 110 14 11 chr4 184261481 184263127 -18065220 + HSATII Satellite Satellite 1 1650 -68 2656 258 78 38 chr4 184363150 184364570 -17963777 - L1ME LINE L1 -637 5596 4143 972 272 59 69 chr4 184364568 184365088 -17963259 - L1ME LINE L1 -3412 2803 2279 * 1841 170 3 6 chr4 184365088 184365400 -17962947 - AluJb SINE Alu 0 312 2 972 272 59 69 chr4 184365400 184365465 -17962882 - L1ME LINE L1 -3936 2279 2215 3094 114 98 43 chr4 184365465 184366045 -17962302 - LTR9 LTR ERV1 0 612 1 972 272 59 69 chr4 184366045 184366473 -17961874 - L1ME LINE L1 -4000 2215 1786 1710 109 4 23 chr4 184366867 184367133 -17961214 - L1PB1 LINE L1 -6 6145 5885 547 297 88 73 chr4 184367274 184367470 -17960877 + L1MCa LINE L1 1198 1389 -5218 2176 97 0 19 chr4 184367470 184367781 -17960566 + AluSg SINE Alu 1 305 -5 547 297 88 73 chr4 184367781 184368163 -17960184 + L1MCa LINE L1 1389 1997 -4610 279 278 145 15 chr4 184368258 184368628 -17959719 + L1MCa LINE L1 2236 2614 -3812 950 279 60 22 chr4 184368631 184369379 -17958968 + L1MCa LINE L1 2948 3738 -2688 418 336 52 24 chr4 184369507 184369718 -17958629 + LTR16B LTR ERVL 107 323 -141 1987 275 78 39 chr4 184369833 184370475 -17957872 + L1MCa LINE L1 3777 4392 -2034 186 43 0 0 chr4 184370475 184370498 -17957849 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1987 275 78 39 chr4 184370498 184371066 -17957281 + L1MCa LINE L1 4392 5035 -1391 1611 241 96 91 chr4 184371192 184372197 -17956150 + L1MCa LINE L1 5437 6449 -1 279 379 85 49 chr4 184372626 184373014 -17955333 - L2 LINE L2 0 3272 2871 569 316 43 50 chr4 184373052 184373353 -17954994 - L2 LINE L2 -493 2821 2523 304 279 74 16 chr4 184373535 184373674 -17954673 + MLT1J2 LTR MaLR 1 141 -309 231 318 62 62 chr4 184373723 184373918 -17954429 + MLT1J2 LTR MaLR 256 450 0 393 39 0 0 chr4 184374002 184374053 -17954294 + (TG)n Simple_repeat Simple_repeat 2 52 0 314 332 78 41 chr4 184374727 184374971 -17953376 - L2 LINE L2 -1363 1951 1699 23 0 0 0 chr4 184375378 184375401 -17952946 + AT_rich Low_complexity Low_complexity 1 23 0 303 176 261 52 chr4 184376350 184376503 -17951844 - L2 LINE L2 -9 3304 3120 1448 130 134 12 chr4 184376503 184376749 -17951598 + AluSx SINE Alu 13 288 -24 1228 37 19 0 chr4 184376754 184376915 -17951432 + (GAAA)n Simple_repeat Simple_repeat 1 164 0 1796 277 132 45 chr4 184376926 184377349 -17950998 - L2 LINE L2 -233 3080 2695 2275 101 0 0 chr4 184377349 184377645 -17950702 + AluSc SINE Alu 1 296 -13 1796 277 132 45 chr4 184377645 184378275 -17950072 - L2 LINE L2 -618 2695 1946 672 299 126 37 chr4 184378279 184378732 -17949615 + L2 LINE L2 2788 3289 -24 1279 304 83 30 chr4 184378745 184379374 -17948973 - L2 LINE L2 -1366 1948 1287 626 267 5 63 chr4 184379387 184379578 -17948769 + MER58A DNA MER1_type 6 185 -39 822 156 0 8 chr4 184379615 184379743 -17948604 + FLAM_A SINE Alu 6 132 -10 919 269 165 20 chr4 184379811 184380253 -17948094 - L2 LINE L2 -2067 1247 742 2112 78 42 3 chr4 184380519 184380803 -17947544 - AluSc SINE Alu -14 295 1 23 68 0 0 chr4 184382174 184382218 -17946129 + AT_rich Low_complexity Low_complexity 1 44 0 28 61 0 0 chr4 184382987 184383036 -17945311 + AT_rich Low_complexity Low_complexity 1 49 0 420 20 0 0 chr4 184386973 184387022 -17941325 + (TA)n Simple_repeat Simple_repeat 2 50 0 264 262 71 36 chr4 184387063 184387147 -17941200 + L2 LINE L2 3227 3313 0 2000 128 3 0 chr4 184387227 184387515 -17940832 + AluSx SINE Alu 1 289 -23 233 95 63 0 chr4 184387515 184387578 -17940769 + (TA)n Simple_repeat Simple_repeat 1 67 0 437 140 47 0 chr4 184387651 184387801 -17940546 + (TA)n Simple_repeat Simple_repeat 2 158 0 479 116 28 33 chr4 184387953 184388134 -17940213 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 25 0 0 0 chr4 184388139 184388164 -17940183 + AT_rich Low_complexity Low_complexity 1 25 0 547 81 86 2 chr4 184388195 184388627 -17939720 + (TA)n Simple_repeat Simple_repeat 1 468 0 29 47 0 0 chr4 184388909 184388952 -17939395 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr4 184389878 184389914 -17938433 + AT_rich Low_complexity Low_complexity 1 36 0 411 329 19 32 chr4 184392062 184392217 -17936130 + MER5A DNA MER1_type 18 170 -19 1877 161 3 0 chr4 184392409 184392707 -17935640 - AluSx SINE Alu -13 299 1 2839 299 77 16 chr4 184393074 184394265 -17934082 + L2 LINE L2 1748 3020 -252 2667 165 103 8 chr4 184394307 184394833 -17933514 + MER50 LTR ERV1 2 577 -157 955 70 0 0 chr4 184394836 184394964 -17933383 - AluY SINE Alu -6 305 178 1014 122 0 0 chr4 184394964 184395112 -17933235 + MER50 LTR ERV1 564 711 -23 24 53 0 0 chr4 184395210 184395248 -17933099 + AT_rich Low_complexity Low_complexity 1 38 0 24 67 0 0 chr4 184395407 184395452 -17932895 + AT_rich Low_complexity Low_complexity 1 45 0 2099 73 38 7 chr4 184395543 184395830 -17932517 + AluSx SINE Alu 1 296 -16 2347 85 0 0 chr4 184396157 184396463 -17931884 + AluSx SINE Alu 1 306 -6 21 0 0 0 chr4 184396566 184396587 -17931760 + AT_rich Low_complexity Low_complexity 1 21 0 478 279 11 86 chr4 184396630 184396910 -17931437 - MLT1D LTR MaLR -183 322 64 2078 164 102 12 chr4 184397346 184397767 -17930580 + LOR1b LTR ERV1 1 459 -2 379 279 47 8 chr4 184398833 184398962 -17929385 + MLT1D-int LTR MaLR 1238 1371 0 299 254 15 0 chr4 184398962 184399029 -17929318 + MLT1D LTR MaLR 1 68 -437 1676 204 83 40 chr4 184399189 184399669 -17928678 - MLT1D LTR MaLR 0 505 5 308 376 85 5 chr4 184399732 184399921 -17928426 + MIR3 SINE MIR 2 205 -3 727 156 42 57 chr4 184400392 184400584 -17927763 + MER53 DNA DNA 1 189 0 1961 140 0 0 chr4 184400951 184401281 -17927066 - AluSx SINE Alu 0 334 5 735 295 18 45 chr4 184401721 184401982 -17926365 + MIR SINE MIR 3 262 0 23 33 0 0 chr4 184402043 184402073 -17926274 + AT_rich Low_complexity Low_complexity 1 30 0 21 95 0 0 chr4 184403224 184403287 -17925060 + AT_rich Low_complexity Low_complexity 1 63 0 396 286 32 32 chr4 184405099 184405253 -17923094 + MIR SINE MIR 109 262 0 23 68 0 0 chr4 184406205 184406249 -17922098 + AT_rich Low_complexity Low_complexity 1 44 0 202 261 282 70 chr4 184408088 184408230 -17920117 + MER5B DNA MER1_type 2 173 -5 619 227 162 0 chr4 184408437 184408622 -17919725 - MER20 DNA MER1_type -2 217 3 3288 165 11 23 chr4 184408892 184409533 -17918814 + L1MC1 LINE L1 5697 6329 -4 1993 139 10 3 chr4 184409844 184410153 -17918194 - AluSx SINE Alu 0 312 2 469 230 11 0 chr4 184410529 184410616 -17917731 + L2 LINE L2 3221 3308 -5 2127 96 50 0 chr4 184410892 184411172 -17917175 + AluSg SINE Alu 1 294 -16 1510 108 0 5 chr4 184412024 184412227 -17916120 + AluSg/x SINE Alu 97 298 -12 23 0 0 0 chr4 184412785 184412808 -17915539 + AT_rich Low_complexity Low_complexity 1 23 0 2277 99 6 10 chr4 184413092 184413405 -17914942 + AluSx SINE Alu 1 312 0 225 188 0 0 chr4 184413495 184413543 -17914804 + (TA)n Simple_repeat Simple_repeat 2 49 0 1513 180 56 0 chr4 184413859 184414151 -17914196 + L1MC1 LINE L1 5520 5831 -502 1551 137 44 10 chr4 184414151 184414439 -17913908 + L1MA8 LINE L1 5983 6285 -6 1513 180 56 0 chr4 184414439 184414451 -17913896 + L1MC1 LINE L1 5831 5841 -492 2346 84 3 0 chr4 184414470 184414767 -17913580 - AluY SINE Alu -13 298 1 3026 141 15 12 chr4 184414783 184415302 -17913045 + L1MC1 LINE L1 5813 6333 0 1653 219 12 0 chr4 184415560 184415903 -17912444 - MER7A DNA MER2_type -1 345 1 1915 130 10 10 chr4 184416275 184416568 -17911779 + AluSq SINE Alu 1 293 -20 2239 196 38 13 chr4 184417199 184417674 -17910673 + L1MC3 LINE L1 7299 7785 0 207 0 0 0 chr4 184418467 184418490 -17909857 + (TG)n Simple_repeat Simple_repeat 2 24 0 584 302 60 8 chr4 184418877 184419112 -17909235 + MIR SINE MIR 16 262 0 1397 155 9 4 chr4 184419297 184419529 -17908818 - MER46A DNA MER2_type -2 234 2 2012 185 59 37 chr4 184419629 184420084 -17908263 + MLT1C LTR MaLR 1 465 -2 2448 73 0 3 chr4 184420809 184421110 -17907237 - AluSg SINE Alu -10 300 1 261 0 0 0 chr4 184421425 184421454 -17906893 + (A)n Simple_repeat Simple_repeat 1 29 0 388 177 204 18 chr4 184422220 184422333 -17906014 - MIR3 SINE MIR -6 202 69 29 0 0 0 chr4 184423153 184423182 -17905165 + AT_rich Low_complexity Low_complexity 1 29 0 1757 140 18 0 chr4 184424116 184424421 -17903926 - AluSx SINE Alu 0 310 1 201 122 49 0 chr4 184424928 184424969 -17903378 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 224 59 29 0 chr4 184425181 184425215 -17903132 + (TA)n Simple_repeat Simple_repeat 1 35 0 198 0 0 0 chr4 184425590 184425612 -17902735 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1520 161 0 60 chr4 184425616 184425851 -17902496 - AluJb SINE Alu -31 281 66 2548 110 11 5 chr4 184425851 184426224 -17902123 + THE1C LTR MaLR 1 375 0 1520 161 0 60 chr4 184426224 184426287 -17902060 - AluJb SINE Alu -246 66 1 314 317 40 20 chr4 184426291 184426392 -17901955 + L2 LINE L2 3171 3273 -40 1359 208 10 23 chr4 184426418 184426721 -17901626 + AluJo SINE Alu 5 303 -9 253 223 92 46 chr4 184428777 184428907 -17899440 - L1MC4 LINE L1 0 8042 7907 4322 260 64 86 chr4 184428920 184431438 -17896909 - L1MC4a LINE L1 -91 7717 5255 1609 159 28 4 chr4 184431453 184431813 -17896534 + MSTA LTR MaLR 5 426 -2 8937 174 21 12 chr4 184431815 184433451 -17894896 + MSTA-int LTR MaLR 1 1650 -1 1496 165 138 84 chr4 184433452 184433783 -17894564 + MSTA LTR MaLR 1 359 -69 2147 113 3 3 chr4 184433783 184434076 -17894271 - AluSg SINE Alu -17 293 1 1496 165 138 84 chr4 184434076 184434150 -17894197 + MSTA LTR MaLR 359 428 0 376 280 80 76 chr4 184434155 184434405 -17893942 - L1MC4a LINE L1 -903 5243 4993 246 234 16 0 chr4 184434436 184434500 -17893847 + (CAAAT)n Simple_repeat Simple_repeat 4 68 0 542 310 70 50 chr4 184434519 184434819 -17893528 - L1MC4a LINE L1 -1188 4958 4666 2274 57 4 7 chr4 184434819 184435143 -17893204 - AluY SINE Alu 0 323 1 542 310 70 50 chr4 184435143 184435624 -17892723 - L1MC4a LINE L1 -1480 4666 4160 207 0 0 0 chr4 184435871 184435894 -17892453 + (TG)n Simple_repeat Simple_repeat 1 23 0 500 68 27 0 chr4 184436199 184436272 -17892075 + MADE1 DNA Mariner 1 75 -5 1032 230 129 70 chr4 184436278 184436721 -17891626 + MLT1D LTR MaLR 37 505 0 4730 181 9 24 chr4 184437116 184438526 -17889821 - L1MB1 LINE L1 0 6232 4835 1157 161 34 0 chr4 184438529 184438734 -17889613 + L1MA4 LINE L1 6067 6278 -22 225 65 0 0 chr4 184438740 184438771 -17889576 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1171 172 0 10 chr4 184438799 184439002 -17889345 - AluJo SINE Alu -4 308 108 1530 216 21 8 chr4 184439053 184439441 -17888906 - L1MB1 LINE L1 -1379 4831 4439 883 245 70 0 chr4 184439446 184439719 -17888628 - L1MB1 LINE L1 -3368 2842 2551 411 368 21 4 chr4 184439898 184440137 -17888210 - L1MB1 LINE L1 -5897 244 2 1541 209 91 44 chr4 184440333 184440815 -17887532 - MLT1D LTR MaLR 0 505 1 23 0 0 0 chr4 184441435 184441458 -17886889 + AT_rich Low_complexity Low_complexity 1 23 0 2126 188 54 54 chr4 184441625 184442124 -17886223 + MLT1D LTR MaLR 2 500 -5 380 366 151 11 chr4 184442128 184442486 -17885861 - L1ME LINE L1 -396 5725 5318 227 323 81 10 chr4 184443075 184443174 -17885173 + L2 LINE L2 3167 3272 0 383 137 14 0 chr4 184443210 184443283 -17885064 + (TA)n Simple_repeat Simple_repeat 2 75 0 26 30 0 0 chr4 184443307 184443340 -17885007 + AT_rich Low_complexity Low_complexity 1 33 0 382 310 57 53 chr4 184443451 184443696 -17884651 - L3 LINE CR1 -95 1482 1237 2716 127 16 14 chr4 184443730 184444157 -17884190 + MSTA LTR MaLR 1 428 0 8929 177 31 6 chr4 184444157 184445767 -17882580 + MSTA-int LTR MaLR 1 1651 0 1030 88 47 83 chr4 184445767 184445959 -17882388 + MSTA LTR MaLR 1 185 -243 657 266 46 53 chr4 184446077 184446340 -17882007 - MIR SINE MIR -1 261 1 29 28 0 0 chr4 184447006 184447042 -17881305 + AT_rich Low_complexity Low_complexity 1 36 0 1673 132 118 11 chr4 184449572 184449844 -17878503 - AluSx SINE Alu -11 301 1 33 25 0 0 chr4 184449886 184449926 -17878421 + AT_rich Low_complexity Low_complexity 1 40 0 1461 170 4 0 chr4 184451869 184452146 -17876201 - L1MA4 LINE L1 -6 6294 6017 402 268 43 87 chr4 184452146 184452198 -17876149 - MER112 DNA MER1_type -17 243 190 1554 149 0 8 chr4 184452198 184452433 -17875914 - AluSg/x SINE Alu -14 298 66 402 268 43 87 chr4 184452433 184452634 -17875713 - MER112 DNA MER1_type -70 190 1 390 241 142 19 chr4 184452670 184452832 -17875515 + MIR SINE MIR 81 262 0 2107 114 4 0 chr4 184452872 184453152 -17875195 - AluSx SINE Alu -31 281 1 222 236 18 0 chr4 184454003 184454058 -17874289 + (CA)n Simple_repeat Simple_repeat 1 56 0 25 31 0 0 chr4 184454253 184454285 -17874062 + AT_rich Low_complexity Low_complexity 1 32 0 233 158 0 53 chr4 184455866 184455923 -17872424 + GA-rich Low_complexity Low_complexity 2 55 0 355 254 73 73 chr4 184455986 184456163 -17872184 + HAL1 LINE L1 2 178 -2329 431 251 104 35 chr4 184456268 184456352 -17871995 - L1MEd LINE L1 -1276 4853 4776 4154 116 9 5 chr4 184456352 184456984 -17871363 + MER41B LTR ERV1 1 635 0 431 251 104 35 chr4 184456984 184457158 -17871189 - L1MEd LINE L1 -1353 4776 4577 489 275 59 97 chr4 184457190 184457510 -17870837 - L1MEd LINE L1 -1828 4301 3994 797 324 61 49 chr4 184457711 184458047 -17870300 - L2 LINE L2 0 3313 2967 1653 84 0 5 chr4 184458047 184458299 -17870048 - AluSq SINE Alu 0 322 72 797 324 61 49 chr4 184458299 184458452 -17869895 - L2 LINE L2 -346 2967 2817 242 291 12 0 chr4 184458710 184458796 -17869551 - L1MEd LINE L1 -2633 3496 3410 22 35 0 0 chr4 184458861 184458890 -17869457 + AT_rich Low_complexity Low_complexity 1 29 0 407 221 19 7 chr4 184458973 184459127 -17869220 + CT-rich Low_complexity Low_complexity 2 157 0 2333 96 0 0 chr4 184459191 184459492 -17868855 + AluSg SINE Alu 1 301 -9 561 333 40 37 chr4 184459493 184459847 -17868500 - MLT1I LTR MaLR -54 355 1 588 280 70 39 chr4 184459856 184460345 -17868002 - L1MEd LINE L1 -2904 3225 2722 287 330 25 0 chr4 184460340 184460458 -17867889 - L1MEd LINE L1 -5554 565 445 * 291 270 81 0 chr4 184460995 184461106 -17867241 + HAL1 LINE L1 818 937 -1570 301 164 27 55 chr4 184461168 184461241 -17867106 - L1MCa LINE L1 -4362 2064 1994 * 339 281 11 0 chr4 184461185 184461274 -17867073 + L1MC4 LINE L1 6614 6703 -1339 27 49 0 0 chr4 184461275 184461316 -17867031 + AT_rich Low_complexity Low_complexity 1 41 0 1332 192 13 33 chr4 184461364 184461665 -17866682 + MER61B LTR ERV1 1 396 -29 463 254 59 32 chr4 184461781 184462001 -17866346 + HAL1 LINE L1 1128 1353 -1154 275 279 180 0 chr4 184462501 184462612 -17865735 - L2 LINE L2 -8 3305 3175 1985 135 34 0 chr4 184462937 184463234 -17865113 - AluSg SINE Alu -3 307 1 381 238 36 36 chr4 184463556 184463749 -17864598 - HAL1 LINE L1 -1242 1265 1073 934 175 6 17 chr4 184464113 184464290 -17864057 - AluJb SINE Alu 0 312 138 252 318 0 0 chr4 184464876 184464939 -17863408 + L2 LINE L2 2963 3025 -288 444 260 86 95 chr4 184464967 184465224 -17863123 - MLT1F LTR MaLR 0 545 302 314 205 95 50 chr4 184465218 184465362 -17862985 - MLT1H1 LTR MaLR -357 192 1 * 682 192 23 96 chr4 184465401 184465530 -17862817 + L2 LINE L2 3109 3217 -96 2056 117 14 0 chr4 184465530 184465821 -17862526 + AluSp SINE Alu 3 297 -16 682 192 23 96 chr4 184465821 184465910 -17862437 + L2 LINE L2 3217 3311 -2 295 274 170 56 chr4 184466700 184467047 -17861300 + L2 LINE L2 2674 3057 -256 2070 128 0 0 chr4 184468078 184468366 -17859981 + AluSx SINE Alu 3 290 -22 1874 69 0 4 chr4 184468946 184469177 -17859170 - AluSc SINE Alu -17 292 63 244 35 17 69 chr4 184470755 184470813 -17857534 + (TA)n Simple_repeat Simple_repeat 2 56 0 22 35 0 0 chr4 184470843 184470872 -17857475 + AT_rich Low_complexity Low_complexity 1 29 0 211 28 56 0 chr4 184470874 184470910 -17857437 + (TA)n Simple_repeat Simple_repeat 2 39 0 2413 88 0 0 chr4 184470937 184471234 -17857113 + AluSx SINE Alu 1 297 -15 23 0 0 0 chr4 184471724 184471747 -17856600 + AT_rich Low_complexity Low_complexity 1 23 0 1441 195 11 15 chr4 184471749 184472021 -17856326 + AluJo SINE Alu 2 272 -40 975 168 135 19 chr4 184472027 184472393 -17855954 + MER84 LTR ERVI 16 507 0 1503 181 21 29 chr4 184472507 184472788 -17855559 + AluJb SINE Alu 3 281 -31 209 56 0 28 chr4 184473159 184473195 -17855152 + (TTTTTA)n Simple_repeat Simple_repeat 1 35 0 33 25 0 0 chr4 184473587 184473627 -17854720 + AT_rich Low_complexity Low_complexity 1 40 0 2301 151 26 35 chr4 184473662 184474007 -17854340 + L1MA8 LINE L1 5597 5939 -352 2120 113 3 3 chr4 184474007 184474298 -17854049 + AluSx SINE Alu 1 291 -21 2301 151 26 35 chr4 184474298 184474377 -17853970 + L1MA8 LINE L1 5939 6017 -274 594 316 37 4 chr4 184474498 184474791 -17853556 + L2 LINE L2 2728 3026 -287 261 265 0 0 chr4 184474913 184474981 -17853366 + MIR SINE MIR 195 262 0 1876 155 3 3 chr4 184475034 184475331 -17853016 - AluJb SINE Alu -10 302 6 2439 65 7 19 chr4 184475731 184476041 -17852306 - AluY SINE Alu -5 306 1 1860 155 0 0 chr4 184476469 184476740 -17851607 + AluSx SINE Alu 14 284 -28 2239 122 0 0 chr4 184477464 184477767 -17850580 + AluSx SINE Alu 1 303 -9 25 0 0 0 chr4 184478047 184478072 -17850275 + AT_rich Low_complexity Low_complexity 1 25 0 217 365 74 14 chr4 184478134 184478282 -17850065 + MIR SINE MIR 20 176 -86 962 289 53 43 chr4 184478520 184478935 -17849412 + LTR16C LTR ERVL 73 491 0 417 227 182 0 chr4 184478935 184479045 -17849302 - MER94 DNA DNA -4 130 1 1416 140 15 4 chr4 184479222 184479487 -17848860 + L1MA2 LINE L1 6037 6304 0 416 184 55 6 chr4 184479491 184479501 -17848846 + (TA)n Simple_repeat Simple_repeat 1 9 -162 258 19 19 75 chr4 184479501 184479554 -17848793 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 416 184 55 6 chr4 184479554 184479706 -17848641 + (TA)n Simple_repeat Simple_repeat 9 171 0 24 32 0 0 chr4 184479822 184479853 -17848494 + AT_rich Low_complexity Low_complexity 1 31 0 1663 94 0 5 chr4 184479989 184480213 -17848134 - AluSc SINE Alu -16 293 71 2438 49 0 13 chr4 184480213 184480516 -17847831 - AluY SINE Alu -10 301 1 283 298 29 10 chr4 184481228 184481332 -17847015 + L2 LINE L2 3203 3308 -5 837 273 131 40 chr4 184481392 184481709 -17846638 + L2 LINE L2 2667 3032 -281 2234 104 0 3 chr4 184481709 184482007 -17846340 - AluSc SINE Alu -12 297 1 837 273 131 40 chr4 184482007 184482142 -17846205 + L2 LINE L2 3032 3153 -160 205 309 122 43 chr4 184482393 184482532 -17845815 - L3b LINE CR1 -207 1376 1227 294 264 53 22 chr4 184482632 184482736 -17845611 - MIR SINE MIR -76 132 50 181 447 13 0 chr4 184482759 184482835 -17845512 - L2 LINE L2 -53 3219 3143 2019 116 3 10 chr4 184482963 184483256 -17845091 + AluSc SINE Alu 1 291 -18 234 0 0 0 chr4 184483877 184483903 -17844444 + (TA)n Simple_repeat Simple_repeat 2 27 0 1991 117 0 0 chr4 184484333 184484597 -17843750 + AluY SINE Alu 1 264 -47 2210 99 0 7 chr4 184485305 184485597 -17842750 - AluSg SINE Alu -16 294 5 1512 195 36 10 chr4 184485752 184486055 -17842292 - AluJo SINE Alu 0 312 2 1555 185 0 0 chr4 184486525 184486795 -17841552 + Tigger3(Golem) DNA MER2_type 18 287 -2742 674 130 0 0 chr4 184486933 184487033 -17841314 - MSTB LTR MaLR 0 432 333 896 120 0 0 chr4 184487117 184487234 -17841113 + AluSp SINE Alu 152 268 -45 1332 214 59 56 chr4 184487430 184487680 -17840667 - MSTB LTR MaLR -102 324 71 2218 117 0 0 chr4 184487680 184487979 -17840368 - AluSq SINE Alu -14 299 1 1332 214 59 56 chr4 184487979 184488051 -17840296 - MSTB LTR MaLR -355 71 1 21 0 0 0 chr4 184488451 184488472 -17839875 + AT_rich Low_complexity Low_complexity 1 21 0 195 371 150 6 chr4 184490709 184490876 -17837471 + L2 LINE L2 2166 2356 -958 25 90 0 0 chr4 184491775 184491842 -17836505 + AT_rich Low_complexity Low_complexity 1 67 0 29 0 0 25 chr4 184492588 184492607 -17835740 + AT_rich Low_complexity Low_complexity 1 19 -20 693 191 0 8 chr4 184492607 184492738 -17835609 + FLAM_C SINE Alu 2 131 -2 29 0 0 25 chr4 184492738 184492758 -17835589 + AT_rich Low_complexity Low_complexity 19 39 0 1752 263 68 25 chr4 184493082 184494208 -17834139 + L1MEc LINE L1 2032 3165 -3050 27 87 0 0 chr4 184494228 184494297 -17834050 + AT_rich Low_complexity Low_complexity 1 69 0 266 286 55 0 chr4 184494349 184494440 -17833907 + MIR SINE MIR 161 256 -6 287 267 89 11 chr4 184495194 184495284 -17833063 - L2 LINE L2 -5 3267 3171 295 319 31 61 chr4 184495624 184495787 -17832560 - L2 LINE L2 -587 2727 2570 23 33 0 0 chr4 184496213 184496243 -17832104 + AT_rich Low_complexity Low_complexity 1 30 0 2271 114 0 0 chr4 184496736 184497035 -17831312 + AluSc SINE Alu 6 304 -5 9917 133 44 11 chr4 184497179 184498806 -17829541 - Tigger1 DNA MER2_type 0 2418 739 411 245 142 0 chr4 184498804 184498910 -17829437 - Tigger1 DNA MER2_type -2061 357 237 * 523 98 0 24 chr4 184498910 184498992 -17829355 - MADE1 DNA Mariner 0 80 1 * 1224 153 17 46 chr4 184498992 184499230 -17829117 - Tigger1 DNA MER2_type -2180 238 8 2088 124 3 0 chr4 184499807 184500098 -17828249 - AluSx SINE Alu -20 292 1 1901 138 7 3 chr4 184500324 184500607 -17827740 - AluSx SINE Alu -22 290 7 205 80 20 40 chr4 184501484 184501534 -17826813 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 183 80 0 0 chr4 184504022 184504047 -17824300 + (CAA)n Simple_repeat Simple_repeat 3 27 0 376 364 87 30 chr4 184505947 184506441 -17821906 - L2 LINE L2 -557 2757 2236 1376 280 83 14 chr4 184506747 184507250 -17821097 + MLT1F LTR MaLR 1 538 -4 2063 134 13 0 chr4 184509637 184509942 -17818405 + AluSx SINE Alu 1 309 -3 327 355 7 0 chr4 184510658 184510796 -17817551 - MIR SINE MIR 0 262 124 1371 113 213 4 chr4 184510891 184511131 -17817216 - AluSg1 SINE Alu -19 290 1 191 222 44 0 chr4 184511153 184511198 -17817149 + L2 LINE L2 3261 3307 -6 24 0 0 0 chr4 184511358 184511382 -17816965 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr4 184511434 184511473 -17816874 + AT_rich Low_complexity Low_complexity 1 39 0 1996 152 3 0 chr4 184511538 184511834 -17816513 - AluSq SINE Alu -16 297 1 207 139 0 0 chr4 184512096 184512132 -17816215 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 1049 176 13 34 chr4 184512596 184512834 -17815513 + L1MB7 LINE L1 5943 6175 -9 1032 106 0 0 chr4 184512920 184513052 -17815295 - AluSg SINE Alu -178 132 1 2242 201 9 2 chr4 184513751 184514194 -17814153 - L1MB5 LINE L1 -10 6164 5719 690 354 151 14 chr4 184514420 184514587 -17813760 + L2 LINE L2 2269 2412 -902 2120 108 0 3 chr4 184514587 184514918 -17813429 - AluSp SINE Alu 0 330 1 690 354 151 14 chr4 184514918 184515131 -17813216 + L2 LINE L2 2412 2595 -719 1358 175 4 0 chr4 184515131 184515399 -17812948 - L1MA4 LINE L1 -2 6298 6030 690 354 151 14 chr4 184515399 184515567 -17812780 + L2 LINE L2 2595 2894 -420 2265 106 0 0 chr4 184516397 184516698 -17811649 - AluSx SINE Alu -11 301 1 21 36 0 0 chr4 184518256 184518284 -17810063 + AT_rich Low_complexity Low_complexity 1 28 0 2076 118 3 0 chr4 184518557 184518854 -17809493 + AluSx SINE Alu 1 298 -14 2077 97 34 7 chr4 184519771 184520069 -17808278 - AluSq SINE Alu -7 306 1 1889 99 70 7 chr4 184521033 184521317 -17807030 + AluSc SINE Alu 1 302 -7 209 283 121 40 chr4 184521469 184521568 -17806779 - L2 LINE L2 0 3313 3207 216 279 15 44 chr4 184526899 184526967 -17801380 + MIR SINE MIR 25 90 -172 25 31 0 0 chr4 184527076 184527108 -17801239 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr4 184527177 184527200 -17801147 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr4 184527571 184527602 -17800745 + AT_rich Low_complexity Low_complexity 1 31 0 2115 98 27 0 chr4 184528101 184528397 -17799950 + AluSc SINE Alu 6 309 0 22 56 0 0 chr4 184528544 184528580 -17799767 + AT_rich Low_complexity Low_complexity 1 36 0 2149 103 0 17 chr4 184529788 184530089 -17798258 - AluSx SINE Alu -16 296 1 304 220 220 11 chr4 184530157 184530248 -17798099 + L2 LINE L2 3203 3312 -1 22 0 0 0 chr4 184530574 184530596 -17797751 + AT_rich Low_complexity Low_complexity 1 22 0 297 222 183 32 chr4 184531747 184531873 -17796474 + MIR SINE MIR 118 262 0 24 32 0 0 chr4 184532858 184532889 -17795458 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 184533031 184533052 -17795295 + AT_rich Low_complexity Low_complexity 1 21 0 254 183 25 0 chr4 184533571 184533636 -17794711 + L1MD3 LINE L1 7164 7277 -578 426 252 19 19 chr4 184533636 184533743 -17794604 + MLT1F1 LTR MaLR 3 109 -458 2350 201 47 23 chr4 184533754 184534325 -17794022 + L1MD3 LINE L1 7397 7981 -14 252 59 0 0 chr4 184534455 184534489 -17793858 + (TG)n Simple_repeat Simple_repeat 2 35 0 272 355 71 14 chr4 184534541 184534682 -17793665 + MIR SINE MIR 14 162 -100 864 274 133 54 chr4 184534742 184535202 -17793145 + MLT1H1 LTR MaLR 44 539 -16 410 296 30 53 chr4 184535545 184535714 -17792633 - L2 LINE L2 -4 3268 3104 395 281 10 10 chr4 184535774 184535870 -17792477 + MER119 DNA MER1_type 6 101 -482 393 261 11 22 chr4 184535883 184535975 -17792372 + MER119 DNA MER1_type 491 581 -2 201 222 0 0 chr4 184536796 184536859 -17791488 + T-rich Low_complexity Low_complexity 2 64 0 256 321 122 41 chr4 184537253 184537449 -17790898 + L2 LINE L2 2176 2387 -927 348 211 39 94 chr4 184537524 184537652 -17790695 + L2 LINE L2 3193 3313 0 242 372 32 0 chr4 184538794 184538888 -17789459 + MIR SINE MIR 17 113 -95 23 0 0 0 chr4 184538993 184539016 -17789331 + AT_rich Low_complexity Low_complexity 1 23 0 1953 116 26 16 chr4 184540580 184540883 -17787464 - AluSq SINE Alu -7 306 1 181 346 99 12 chr4 184541335 184541416 -17786931 - L2 LINE L2 -33 3280 3193 194 287 69 30 chr4 184542480 184542581 -17785766 - MIR SINE MIR -102 160 56 198 372 0 21 chr4 184544265 184544359 -17783988 + MER5A DNA MER1_type 43 134 -55 293 125 38 12 chr4 184544492 184544572 -17783775 + (TA)n Simple_repeat Simple_repeat 1 82 0 218 201 67 15 chr4 184544591 184544725 -17783622 + (TA)n Simple_repeat Simple_repeat 2 142 0 521 303 32 5 chr4 184544749 184544937 -17783410 - MLT1J1 LTR MaLR -215 231 63 645 343 112 27 chr4 184545173 184545738 -17782609 - L2 LINE L2 0 3313 2698 1876 194 14 64 chr4 184545753 184546176 -17782171 + MLT1D LTR MaLR 3 404 -101 337 322 68 31 chr4 184546349 184546641 -17781706 + L1M4 LINE L1 4903 5205 -941 514 172 104 25 chr4 184546651 184546814 -17781533 + L1M4 LINE L1 5125 5300 -846 2113 92 17 7 chr4 184547611 184547906 -17780441 + AluSq SINE Alu 3 300 -13 587 318 38 0 chr4 184548100 184548311 -17780036 - MIR SINE MIR -10 252 34 190 305 14 106 chr4 184549512 184549653 -17778694 - MIR SINE MIR -46 216 89 1077 211 135 23 chr4 184549664 184549930 -17778417 + AluJb SINE Alu 1 296 -6 265 222 50 0 chr4 184550184 184550283 -17778064 + (TA)n Simple_repeat Simple_repeat 1 104 0 736 238 36 0 chr4 184550797 184550965 -17777382 + MER45A DNA AcHobo 4 177 -1 761 234 11 11 chr4 184551033 184551208 -17777139 + MER31B LTR ERV1 8 182 -284 1039 202 5 5 chr4 184551241 184551449 -17776898 + MER31B LTR ERV1 259 466 0 290 261 54 22 chr4 184551827 184551919 -17776428 - MIR3 SINE MIR -6 202 108 3835 174 40 4 chr4 184554487 184555194 -17773153 + MER44D DNA MER2_type 1 604 -1 250 323 85 45 chr4 184555798 184555999 -17772348 + MIR SINE MIR 54 262 0 514 299 51 51 chr4 184556455 184556789 -17771558 + MLT1I LTR MaLR 74 407 -2 22 70 0 0 chr4 184557902 184557945 -17770402 + AT_rich Low_complexity Low_complexity 1 43 0 351 205 46 20 chr4 184557992 184558143 -17770204 + (TA)n Simple_repeat Simple_repeat 2 156 0 1109 75 0 0 chr4 184558290 184558423 -17769924 + AluSg SINE Alu 1 133 -177 2068 123 17 0 chr4 184558423 184558716 -17769631 + AluSg SINE Alu 1 298 -12 21 36 0 0 chr4 184560307 184560335 -17768012 + AT_rich Low_complexity Low_complexity 1 28 0 2846 264 58 9 chr4 184561606 184562490 -17765857 + L1ME1 LINE L1 36 962 -5434 3281 187 51 39 chr4 184562500 184563266 -17765081 + L1MC3 LINE L1 6087 6861 -924 830 194 103 27 chr4 184563339 184563439 -17764908 + L1MC3 LINE L1 6136 6227 -117 1972 200 124 78 chr4 184563439 184564229 -17764118 - LTR1B LTR ERV1 0 826 1 830 194 103 27 chr4 184564229 184564355 -17763992 + L1MC3 LINE L1 6227 6343 -1 841 214 102 10 chr4 184564487 184564790 -17763557 + L1ME1 LINE L1 1944 2274 -4122 791 253 0 55 chr4 184564804 184565057 -17763290 + L1ME1 LINE L1 3980 4218 -1997 446 263 37 21 chr4 184565100 184565290 -17763057 + L1ME1 LINE L1 4418 4610 -1605 * 2780 250 22 36 chr4 184565276 184565425 -17762922 + L1ME1 LINE L1 5391 5541 -694 2084 139 0 0 chr4 184565425 184565726 -17762621 + AluSx SINE Alu 1 301 -11 2780 250 22 36 chr4 184565726 184566428 -17761919 + L1ME1 LINE L1 5541 6230 -5 368 177 0 0 chr4 184567003 184567065 -17761282 + L1MCa LINE L1 917 978 -5448 2077 254 12 9 chr4 184567083 184567740 -17760607 + L1M4 LINE L1 2848 3506 -2640 253 216 26 35 chr4 184568399 184568515 -17759832 + A-rich Low_complexity Low_complexity 3 117 0 1716 165 20 13 chr4 184568645 184568948 -17759399 + AluSx SINE Alu 1 305 -7 21 82 0 0 chr4 184569035 184569084 -17759263 + AT_rich Low_complexity Low_complexity 1 49 0 294 330 11 0 chr4 184570195 184570286 -17758061 - MIR3 SINE MIR -49 159 68 207 69 0 0 chr4 184570597 184570626 -17757721 + (CA)n Simple_repeat Simple_repeat 1 29 0 1021 178 0 0 chr4 184571734 184571903 -17756444 + AluJb SINE Alu 1 169 -143 1992 125 4 0 chr4 184572202 184572513 -17755834 - AluSx SINE Alu 0 312 1 740 319 13 4 chr4 184572926 184573152 -17755195 + MIR SINE MIR 32 259 -3 786 218 125 120 chr4 184574130 184574305 -17754042 + MLT1F1 LTR MaLR 1 174 -393 1499 189 18 14 chr4 184574305 184574618 -17753729 + AluJo SINE Alu 1 314 0 786 218 125 120 chr4 184574618 184574852 -17753495 + MLT1F1 LTR MaLR 174 424 -143 330 306 35 42 chr4 184575227 184575371 -17752976 - MIR SINE MIR -62 200 58 534 257 62 56 chr4 184576768 184576947 -17751400 + MER5A DNA MER1_type 9 188 -1 1921 18 0 0 chr4 184578504 184578722 -17749625 - AluYb8 SINE Alu -11 307 90 234 212 30 0 chr4 184580213 184580279 -17748068 - MER116 DNA Mariner -12 68 1 202 200 0 31 chr4 184581928 184581993 -17746354 + CT-rich Low_complexity Low_complexity 3 65 0 378 0 0 0 chr4 184582002 184582044 -17746303 + (CAT)n Simple_repeat Simple_repeat 3 44 0 230 222 0 0 chr4 184582350 184582395 -17745952 - L2 LINE L2 -18 3254 3210 209 208 245 0 chr4 184583428 184583481 -17744866 + MIR SINE MIR 197 262 0 2376 68 7 0 chr4 184583601 184583909 -17744438 + AluY SINE Alu 1 310 -1 525 298 105 13 chr4 184586656 184586894 -17741453 + MIR SINE MIR 3 262 0 280 197 16 0 chr4 184590284 184590345 -17738002 + MER116 DNA Mariner 4 65 -15 249 221 0 0 chr4 184592315 184592419 -17735928 + (CA)n Simple_repeat Simple_repeat 1 104 0 972 179 16 0 chr4 184593608 184593792 -17734555 - L1MB3 LINE L1 -8 6175 5989 2113 119 0 13 chr4 184593820 184594123 -17734224 - AluSx SINE Alu -13 299 1 22 35 0 0 chr4 184594257 184594286 -17734061 + AT_rich Low_complexity Low_complexity 1 29 0 1084 179 80 89 chr4 184594406 184594516 -17733831 + AluJo SINE Alu 1 111 -191 2352 100 3 0 chr4 184594516 184594825 -17733522 - AluSp SINE Alu -3 310 1 1084 179 80 89 chr4 184594825 184595016 -17733331 + AluJo SINE Alu 111 299 -3 2297 52 13 10 chr4 184595657 184595967 -17732380 - AluY SINE Alu 0 311 1 193 307 167 33 chr4 184596126 184596276 -17732071 - L2 LINE L2 -1 3271 3102 191 323 115 21 chr4 184597063 184597159 -17731188 + L2 LINE L2 2944 3048 -265 255 255 245 0 chr4 184597314 184597408 -17730939 + L2 LINE L2 3197 3313 0 246 182 36 0 chr4 184597410 184597465 -17730882 + (TGAA)n Simple_repeat Simple_repeat 4 60 0 263 324 176 14 chr4 184598125 184598267 -17730080 - L2 LINE L2 -6 3266 3102 704 264 70 41 chr4 184598279 184598521 -17729826 - MIR SINE MIR 0 262 14 2329 97 7 0 chr4 184599297 184599607 -17728740 - AluSx SINE Alu 0 312 1 430 306 80 55 chr4 184599698 184600232 -17728115 - L1ME LINE L1 -404 5758 5213 * 506 325 70 22 chr4 184600231 184600784 -17727563 - L1ME LINE L1 -1460 4686 4107 374 325 48 14 chr4 184600789 184601081 -17727266 - L1ME LINE L1 -2073 4073 3772 354 272 99 47 chr4 184601294 184601464 -17726883 + L1ME4a LINE L1 5874 6061 -60 1659 59 8 25 chr4 184601464 184601700 -17726647 - L1PA8 LINE L1 0 6172 5941 354 272 99 47 chr4 184601700 184601761 -17726586 + L1ME4a LINE L1 6061 6117 -4 347 304 11 0 chr4 184601891 184601989 -17726358 - MIR SINE MIR -67 141 43 209 339 222 5 chr4 184603524 184603713 -17724634 - MIR SINE MIR -5 257 28 25 65 0 0 chr4 184603927 184603973 -17724374 + AT_rich Low_complexity Low_complexity 1 46 0 316 324 38 43 chr4 184604173 184604383 -17723964 - L2 LINE L2 -2 3311 3103 1396 171 76 0 chr4 184604706 184604993 -17723354 + AluJo SINE Alu 1 307 0 243 88 0 0 chr4 184605086 184605120 -17723227 + (TC)n Simple_repeat Simple_repeat 1 34 0 372 300 0 17 chr4 184605812 184605932 -17722415 - MIR SINE MIR -38 224 107 887 252 44 24 chr4 184606102 184606352 -17721995 - MIR SINE MIR 0 262 8 292 271 143 8 chr4 184606554 184606687 -17721660 + MIR SINE MIR 105 255 -7 24 85 0 0 chr4 184607603 184607662 -17720685 + AT_rich Low_complexity Low_complexity 1 59 0 1427 172 7 38 chr4 184607730 184608040 -17720307 - AluJb SINE Alu 0 301 1 499 99 36 9 chr4 184608457 184608568 -17719779 + (TA)n Simple_repeat Simple_repeat 2 115 0 734 272 39 55 chr4 184609232 184609489 -17718858 - MIR SINE MIR 0 262 10 1114 173 27 18 chr4 184610150 184610370 -17717977 + AluSg/x SINE Alu 84 305 -7 21 82 0 0 chr4 184610457 184610506 -17717841 + AT_rich Low_complexity Low_complexity 1 49 0 1392 243 91 23 chr4 184610751 184611237 -17717110 - L1ME3A LINE L1 -5 6165 5647 2212 260 34 34 chr4 184611675 184612317 -17716030 - L1ME1 LINE L1 -7 6159 5515 1860 166 3 0 chr4 184612317 184612619 -17715728 + AluJo SINE Alu 1 303 -9 2212 260 34 34 chr4 184612619 184612760 -17715587 - L1ME1 LINE L1 -650 5516 5376 1588 194 7 23 chr4 184612762 184613071 -17715276 - AluJb SINE Alu -8 304 1 338 132 53 53 chr4 184613017 184613093 -17715254 - AluSp SINE Alu -114 189 114 * 2688 244 62 24 chr4 184613072 184613407 -17714940 - L1ME1 LINE L1 -816 5330 5009 1824 124 60 23 chr4 184613407 184613706 -17714641 - AluSx SINE Alu 0 312 3 2688 244 62 24 chr4 184613706 184614713 -17713634 - L1ME1 LINE L1 -1137 5009 3346 5671 194 32 23 chr4 184614725 184616379 -17711968 - L1MC1 LINE L1 -15 6598 4935 2213 210 123 16 chr4 184616395 184616942 -17711405 - L1MC1 LINE L1 -5815 611 7 888 234 49 23 chr4 184617037 184617345 -17711002 - L1ME1 LINE L1 -3114 3032 2717 21 0 0 0 chr4 184618041 184618062 -17710285 + AT_rich Low_complexity Low_complexity 1 21 0 2284 117 0 0 chr4 184618076 184618384 -17709963 + AluSg SINE Alu 3 310 0 180 311 0 0 chr4 184618385 184618430 -17709917 - L2 LINE L2 -15 3298 3254 * 853 248 27 27 chr4 184618396 184618618 -17709729 - MIR SINE MIR -20 242 21 331 263 40 0 chr4 184619011 184619087 -17709260 - L2 LINE L2 -1 3312 3234 368 339 54 36 chr4 184619352 184619573 -17708774 + MIR SINE MIR 38 262 0 2168 124 0 3 chr4 184619785 184620092 -17708255 + AluSx SINE Alu 2 307 -5 30 27 0 0 chr4 184621624 184621661 -17706686 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr4 184621944 184621971 -17706376 + AT_rich Low_complexity Low_complexity 1 27 0 188 326 0 0 chr4 184622538 184622587 -17705760 - L2 LINE L2 0 3272 3224 290 309 93 36 chr4 184624602 184624741 -17703606 + MIR3 SINE MIR 62 208 0 1983 127 73 17 chr4 184625974 184626328 -17702019 - THE1C LTR MaLR -1 374 1 9979 128 14 27 chr4 184626328 184627929 -17700418 - THE1C-int LTR MaLR 0 1580 1 1813 160 64 14 chr4 184627929 184628286 -17700061 - THE1C LTR MaLR 0 375 1 8212 48 2 0 chr4 184628542 184629561 -17698786 - L1PA5 LINE L1 -1050 5096 4076 7212 45 5 0 chr4 184629561 184630594 -17697753 + L1PA5 LINE L1 5111 6147 -7 29 0 0 0 chr4 184630594 184630623 -17697724 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr4 184630995 184631020 -17697327 + AT_rich Low_complexity Low_complexity 1 25 0 188 393 12 0 chr4 184631230 184631314 -17697033 - L2 LINE L2 -1 3271 3187 5574 173 60 32 chr4 184631865 184633146 -17695201 - Charlie5 DNA MER1_type -3 2621 1298 1992 105 11 18 chr4 184633146 184633432 -17694915 - AluSx SINE Alu -28 284 1 5574 173 60 32 chr4 184633432 184633542 -17694805 - Charlie5 DNA MER1_type -1326 1298 1192 988 263 71 5 chr4 184633554 184633994 -17694353 + L1ME3A LINE L1 5477 6026 -136 1320 207 0 4 chr4 184633997 184634243 -17694104 + AluJb SINE Alu 52 296 -16 518 194 0 1 chr4 184634248 184634350 -17693997 + L1M3 LINE L1 5619 5719 -586 360 220 17 59 chr4 184634341 184634459 -17693888 + L1ME3A LINE L1 6035 6147 -23 * 549 272 35 26 chr4 184634497 184634725 -17693622 + L1MC/D LINE L1 965 1194 -4925 268 366 38 4 chr4 184634843 184635078 -17693269 + L1MC/D LINE L1 1364 1606 -4704 363 23 0 0 chr4 184635321 184635365 -17692982 + (CA)n Simple_repeat Simple_repeat 2 45 0 236 221 26 26 chr4 184635520 184635597 -17692750 + L1MC/D LINE L1 2253 2329 -3800 243 296 84 45 chr4 184635678 184636060 -17692287 + L1MC/D LINE L1 2619 3015 -3114 21 71 0 0 chr4 184636303 184636345 -17692002 + AT_rich Low_complexity Low_complexity 1 42 0 242 281 108 60 chr4 184636390 184636639 -17691708 + L1MC/D LINE L1 3418 3678 -2451 563 298 148 50 chr4 184637223 184637904 -17690443 + L1MC/D LINE L1 4404 5151 -978 1036 200 30 30 chr4 184637921 184638132 -17690215 + AluJb SINE Alu 82 295 -17 2409 60 7 0 chr4 184638132 184638454 -17689893 + AluY SINE Alu 1 311 0 1036 200 30 30 chr4 184638454 184638472 -17689875 + AluJb SINE Alu 294 311 -1 478 311 64 40 chr4 184638526 184639048 -17689299 + L1MC/D LINE L1 5242 5774 -447 1615 165 52 11 chr4 184639086 184639450 -17688897 - AluJo SINE Alu 0 379 5 2169 229 49 68 chr4 184639598 184640213 -17688134 + MER90 LTR ERV1 11 613 -1 22 56 0 0 chr4 184642488 184642524 -17685823 + AT_rich Low_complexity Low_complexity 1 36 0 241 283 80 44 chr4 184643418 184643531 -17684816 - MIR SINE MIR -117 145 29 242 139 0 0 chr4 184644075 184644118 -17684229 - L1ME4a LINE L1 -16 6105 6063 209 184 0 41 chr4 184645204 184645253 -17683094 + T-rich Low_complexity Low_complexity 3 49 0 959 276 114 25 chr4 184645605 184646083 -17682264 - LTR33A LTR ERVL 0 523 30 361 317 80 25 chr4 184646742 184646941 -17681406 + L2 LINE L2 2630 2839 -475 214 301 11 32 chr4 184647334 184647427 -17680920 + L2 LINE L2 2641 2731 -583 343 303 34 8 chr4 184647480 184647599 -17680748 - L2 LINE L2 0 3313 3192 439 212 77 12 chr4 184647854 184648024 -17680323 + L1ME LINE L1 5254 5434 -728 7306 181 49 67 chr4 184648027 184648596 -17679751 + L1MA1 LINE L1 4696 5274 -1028 2029 106 33 7 chr4 184648596 184648871 -17679476 + AluSq SINE Alu 1 282 -31 763 85 8 8 chr4 184648872 184648990 -17679357 + (GGAAA)n Simple_repeat Simple_repeat 3 120 0 7306 181 49 67 chr4 184648990 184650227 -17678120 + L1MA1 LINE L1 5274 6532 230 2020 127 40 3 chr4 184650227 184650526 -17677821 - AluSx SINE Alu -2 310 1 7306 181 49 67 chr4 184650526 184650856 -17677491 + L1MA1 LINE L1 6532 5197 -1105 2238 195 35 72 chr4 184650856 184651491 -17676856 + LTR9 LTR ERV1 1 611 -1 7306 181 49 67 chr4 184651491 184652579 -17675768 + L1MA1 LINE L1 5196 6302 0 238 200 0 44 chr4 184652993 184653083 -17675264 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 979 230 91 115 chr4 184653511 184653869 -17674478 - MER34B LTR ERV1 0 565 225 1561 84 40 26 chr4 184653869 184654096 -17674251 - MER30 DNA MER1_type 0 230 1 979 230 91 115 chr4 184654096 184654311 -17674036 - MER34B LTR ERV1 -340 225 6 1062 214 103 41 chr4 184656124 184656579 -17671768 + MER39 LTR ERV1 5 707 0 207 264 74 58 chr4 184656913 184657034 -17671313 + MIR3 SINE MIR 63 185 -23 22 35 0 0 chr4 184658053 184658082 -17670265 + AT_rich Low_complexity Low_complexity 1 29 0 580 267 55 15 chr4 184658605 184658807 -17669540 + MER63A DNA MER1_type 1 210 0 901 179 111 0 chr4 184659373 184659563 -17668784 - MER58A DNA MER1_type -12 212 2 2176 136 0 0 chr4 184660972 184661281 -17667066 + AluSx SINE Alu 2 310 -2 410 275 58 35 chr4 184661321 184661492 -17666855 + MIR SINE MIR 88 262 0 878 299 80 14 chr4 184662001 184662480 -17665867 + L2 LINE L2 2652 3155 -158 827 190 33 92 chr4 184662549 184662913 -17665434 - MER4C LTR ERV1 0 695 291 2083 110 0 4 chr4 184662913 184663218 -17665129 - AluSx SINE Alu 0 307 4 827 190 33 92 chr4 184663218 184663493 -17664854 - MER4C LTR ERV1 -404 291 1 226 229 0 0 chr4 184663519 184663567 -17664780 + L2 LINE L2 3251 3298 -15 378 305 142 13 chr4 184663750 184663888 -17664459 + L1M4 LINE L1 5121 5240 -906 1787 99 7 70 chr4 184663888 184664172 -17664175 - AluSx SINE Alu -14 298 33 378 305 142 13 chr4 184664172 184664272 -17664075 + L1M4 LINE L1 5240 5390 -756 24 32 0 0 chr4 184666477 184666508 -17661839 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr4 184667524 184667556 -17660791 + AT_rich Low_complexity Low_complexity 1 32 0 372 289 64 19 chr4 184668233 184668389 -17659958 + MLT1J LTR MaLR 10 172 -339 431 303 103 5 chr4 184668865 184669050 -17659297 + MIR SINE MIR 58 260 -2 434 274 14 34 chr4 184669276 184669422 -17658925 + AluYa5 SINE Alu 148 290 -21 25 0 0 0 chr4 184669455 184669480 -17658867 + AT_rich Low_complexity Low_complexity 1 25 0 261 286 85 10 chr4 184669840 184670039 -17658308 + L1MC/D LINE L1 5176 5389 -757 233 283 22 65 chr4 184670227 184670319 -17658028 + L1MC/D LINE L1 5567 5654 -2154 34 0 0 0 chr4 184670892 184670926 -17657421 + AT_rich Low_complexity Low_complexity 1 34 0 25 51 0 0 chr4 184671209 184671248 -17657099 + AT_rich Low_complexity Low_complexity 1 39 0 916 156 48 0 chr4 184671254 184671421 -17656926 + L1MA4A LINE L1 6022 6196 -107 * 2789 51 24 0 chr4 184671407 184671778 -17656569 - L1P3 LINE L1 -527 5645 5266 242 153 34 85 chr4 184671811 184671870 -17656477 - L1P3 LINE L1 -872 5274 5219 702 90 38 68 chr4 184671893 184672026 -17656321 + L1MA4A LINE L1 6170 6298 -5 23 33 0 0 chr4 184673187 184673217 -17655130 + AT_rich Low_complexity Low_complexity 1 30 0 2131 96 0 7 chr4 184673770 184674050 -17654297 - AluSg SINE Alu -30 280 3 13806 94 7 3 chr4 184674396 184677128 -17651219 - L1PA7 LINE L1 -16 6138 3390 209 250 40 121 chr4 184677975 184678099 -17650248 + L3b LINE CR1 1108 1221 -362 303 209 55 22 chr4 184678391 184678482 -17649865 + L1PB4 LINE L1 5886 5979 -177 836 160 210 2 chr4 184678965 184679151 -17649196 + L1PB4 LINE L1 5951 6303 0 511 279 201 35 chr4 184679313 184679740 -17648607 - L2 LINE L2 0 3313 2816 191 264 75 0 chr4 184680870 184680923 -17647424 + L2 LINE L2 3257 3313 0 1458 231 15 12 chr4 184681170 184681519 -17646828 + MLT1A1 LTR MaLR 1 354 -11 279 0 0 0 chr4 184681949 184681980 -17646367 + (TG)n Simple_repeat Simple_repeat 1 31 0 591 141 0 126 chr4 184682253 184682388 -17645959 - FLAM_C SINE Alu -15 118 1 25 35 0 52 chr4 184683216 184683274 -17645073 + AT_rich Low_complexity Low_complexity 1 55 0 255 290 84 19 chr4 184684428 184684535 -17643812 + MIR SINE MIR 105 218 -44 1300 216 21 36 chr4 184684700 184685029 -17643318 + MLT2D LTR ERVL 91 414 0 1492 207 55 0 chr4 184685690 184685980 -17642367 + AluJb SINE Alu 5 310 -2 2143 92 11 0 chr4 184686433 184686737 -17641610 + AluSp SINE Alu 1 307 0 835 239 10 0 chr4 184686934 184687139 -17641208 - MER3 DNA MER1_type 0 209 3 561 323 130 5 chr4 184687144 184687367 -17640980 + MIR SINE MIR 12 262 0 332 309 9 27 chr4 184688240 184688350 -17639997 + MIR SINE MIR 154 261 -1 586 274 113 0 chr4 184688665 184688851 -17639496 - MER63A DNA MER1_type -2 208 2 288 0 0 0 chr4 184691283 184691315 -17637032 + (TA)n Simple_repeat Simple_repeat 1 32 0 1906 157 0 0 chr4 184691612 184691917 -17636430 - AluJb SINE Alu -3 309 5 2101 142 0 0 chr4 184692625 184692934 -17635413 + AluSx SINE Alu 1 309 -3 30 89 0 0 chr4 184693496 184693575 -17634772 + AT_rich Low_complexity Low_complexity 1 79 0 2042 161 0 0 chr4 184693908 184694219 -17634128 - AluSx SINE Alu -1 311 1 1082 231 82 30 chr4 184694424 184694862 -17633485 - MER114 LTR ERV -160 488 28 23 54 0 0 chr4 184694881 184694918 -17633429 + AT_rich Low_complexity Low_complexity 1 37 0 544 207 161 38 chr4 184694968 184695229 -17633118 + Charlie7 DNA MER1_type 2317 2609 -3 2072 122 0 0 chr4 184695670 184695973 -17632374 + AluSx SINE Alu 1 303 -9 388 298 57 32 chr4 184699166 184699324 -17629023 - MIR SINE MIR -1 261 100 496 292 0 22 chr4 184699558 184699736 -17628611 + L1ME2 LINE L1 1533 1706 -4690 351 0 0 0 chr4 184699739 184699778 -17628569 + (CA)n Simple_repeat Simple_repeat 2 40 0 1743 171 6 37 chr4 184699870 184700191 -17628156 + AluJo SINE Alu 1 311 -1 1065 234 41 101 chr4 184700234 184700622 -17627725 + MLT1A1 LTR MaLR 1 365 0 909 274 96 16 chr4 184700629 184701201 -17627146 + L1ME2 LINE L1 1816 2433 -3963 * 2304 220 87 64 chr4 184701187 184701640 -17626707 + L1ME2 LINE L1 5359 5800 -433 243 0 0 0 chr4 184701640 184701667 -17626680 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1918 58 0 8 chr4 184701670 184701911 -17626436 - AluY SINE Alu -72 239 1 2304 220 87 64 chr4 184701911 184702297 -17626050 + L1ME2 LINE L1 5801 6221 -12 22 35 0 0 chr4 184702716 184702745 -17625602 + AT_rich Low_complexity Low_complexity 1 29 0 2233 62 0 3 chr4 184704788 184705078 -17623269 + L1PA7 LINE L1 5863 6151 -3 2057 143 0 0 chr4 184705239 184705547 -17622800 - AluSx SINE Alu -4 308 1 251 140 20 0 chr4 184706770 184706820 -17621527 + (CA)n Simple_repeat Simple_repeat 2 52 0 750 236 37 21 chr4 184707233 184707424 -17620923 - MIR SINE MIR -1 261 68 1250 90 104 5 chr4 184707790 184708002 -17620345 - L1PA10 LINE L1 -4 6164 5932 223 350 142 0 chr4 184708061 184708181 -17620166 + MIR3 SINE MIR 71 207 -1 2646 206 95 35 chr4 184708627 184709412 -17618935 + L1MC2 LINE L1 4 763 -5282 3222 176 95 37 chr4 184709938 184711651 -17616696 + L1MC2 LINE L1 752 2664 -3900 234 0 0 0 chr4 184711651 184711677 -17616670 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3222 176 95 37 chr4 184711677 184711737 -17616610 + L1MC2 LINE L1 2664 2719 -3845 2108 114 33 15 chr4 184711745 184712078 -17616269 - MLT1B LTR MaLR 0 390 52 1664 255 41 12 chr4 184712104 184712617 -17615730 + L1MC2 LINE L1 2723 3250 -3314 1239 255 10 29 chr4 184712643 184712961 -17615386 + L1MC2 LINE L1 3407 3714 -2850 2222 115 0 0 chr4 184712961 184713266 -17615081 - AluSg SINE Alu -5 305 1 1239 255 10 29 chr4 184713266 184713433 -17614914 + L1MC2 LINE L1 3714 3883 -2681 1574 183 18 4 chr4 184713487 184713760 -17614587 + AluJb SINE Alu 9 285 -27 34 24 0 0 chr4 184713767 184713808 -17614539 + AT_rich Low_complexity Low_complexity 1 41 0 1126 225 39 54 chr4 184713808 184714142 -17614205 + MLT1A1 LTR MaLR 37 365 0 5391 228 35 19 chr4 184714143 184716781 -17611566 + L1MC2 LINE L1 3881 6567 -195 1944 126 7 7 chr4 184716781 184717067 -17611280 + AluSq SINE Alu 1 286 -27 5391 228 35 19 chr4 184717067 184717266 -17611081 + L1MC2 LINE L1 6567 6761 -1 325 293 30 10 chr4 184719824 184719923 -17608424 + MIR3 SINE MIR 65 165 -43 182 268 0 0 chr4 184720269 184720310 -17608037 + MIR SINE MIR 215 255 -7 2001 136 11 0 chr4 184721305 184721620 -17606727 + AluSx SINE Alu 1 318 0 959 150 0 0 chr4 184721693 184721874 -17606473 - AluSg/x SINE Alu 0 317 137 1991 147 0 3 chr4 184722031 184722338 -17606009 - AluJb SINE Alu -6 306 1 374 328 23 92 chr4 184722721 184722895 -17605452 + L2 LINE L2 3111 3272 0 2221 78 3 26 chr4 184723512 184723820 -17604527 - AluY SINE Alu -10 301 1 21 0 0 0 chr4 184724980 184725001 -17603346 + AT_rich Low_complexity Low_complexity 1 21 0 1777 128 78 42 chr4 184725453 184725813 -17602534 - THE1C LTR MaLR 0 375 3 367 358 17 40 chr4 184726052 184726225 -17602122 + MER5B DNA MER1_type 10 178 0 928 82 0 14 chr4 184726776 184726919 -17601428 - L1PA5 LINE L1 -174 5980 5846 467 51 0 0 chr4 184726919 184726976 -17601371 + L1PA6 LINE L1 6091 6149 -5 234 319 119 48 chr4 184727353 184727475 -17600872 - MIR SINE MIR -1 261 149 1481 151 26 15 chr4 184727475 184727746 -17600601 + AluJo SINE Alu 32 305 -7 234 319 119 48 chr4 184727746 184727833 -17600514 - MIR SINE MIR -113 149 37 3166 245 74 70 chr4 184728622 184731345 -17597002 - L1ME1 LINE L1 -4 6162 3444 294 50 0 0 chr4 184731348 184731388 -17596959 + (TC)n Simple_repeat Simple_repeat 2 41 0 201 39 0 0 chr4 184731391 184731417 -17596930 + (CA)n Simple_repeat Simple_repeat 2 27 0 2027 121 0 3 chr4 184731521 184731829 -17596518 - AluY SINE Alu 0 307 1 585 305 86 45 chr4 184731959 184733174 -17595173 - L1M4 LINE L1 -979 5167 3903 2059 134 0 3 chr4 184733179 184733471 -17594876 - AluSg SINE Alu -19 291 1 286 190 0 0 chr4 184733474 184733532 -17594815 - L1M4 LINE L1 -2214 3932 3875 1429 181 13 67 chr4 184733619 184733933 -17594414 + AluJo SINE Alu 1 297 -15 244 355 71 33 chr4 184734219 184734430 -17593917 + L2 LINE L2 2866 3084 -188 181 316 35 0 chr4 184734538 184734595 -17593752 + L2 LINE L2 3210 3268 -4 294 50 0 0 chr4 184734884 184734924 -17593423 + (TG)n Simple_repeat Simple_repeat 2 41 0 21 95 0 0 chr4 184735185 184735248 -17593099 + AT_rich Low_complexity Low_complexity 1 63 0 25 51 0 0 chr4 184736873 184736912 -17591435 + AT_rich Low_complexity Low_complexity 1 39 0 2092 96 25 35 chr4 184738428 184738742 -17589605 - AluSq SINE Alu -2 311 1 21 57 0 0 chr4 184739035 184739070 -17589277 + AT_rich Low_complexity Low_complexity 1 35 0 366 61 0 0 chr4 184739411 184739460 -17588887 + (CA)n Simple_repeat Simple_repeat 2 50 0 22 35 0 0 chr4 184739548 184739577 -17588770 + AT_rich Low_complexity Low_complexity 1 29 0 207 253 20 111 chr4 184739904 184740003 -17588344 - MIR SINE MIR -87 121 32 203 149 0 21 chr4 184740478 184740525 -17587822 + (TCCC)n Simple_repeat Simple_repeat 1 46 0 213 132 0 26 chr4 184740526 184740564 -17587783 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 206 368 102 0 chr4 184741523 184741689 -17586658 - L2 LINE L2 -1406 1908 1726 6393 108 23 31 chr4 184741732 184742733 -17585614 - Tigger1 DNA MER2_type 0 2418 1426 312 217 0 0 chr4 184742762 184742822 -17585525 - Tigger1 DNA MER2_type -2358 60 1 333 346 34 22 chr4 184742906 184743085 -17585262 + MER5A DNA MER1_type 1 181 -8 642 233 113 60 chr4 184744257 184744659 -17583688 + MLT1F LTR MaLR 118 590 0 227 317 37 0 chr4 184744880 184744962 -17583385 - MIR3 SINE MIR -39 169 85 2021 128 7 13 chr4 184745517 184745823 -17582524 - AluSx SINE Alu -8 304 1 196 109 22 22 chr4 184746078 184746124 -17582223 + (CATAT)n Simple_repeat Simple_repeat 3 48 0 201 180 0 0 chr4 184750285 184750335 -17578012 + (CA)n Simple_repeat Simple_repeat 1 50 0 328 194 45 0 chr4 184750441 184750508 -17577839 + MIR3 SINE MIR 114 183 -25 24 0 0 0 chr4 184750508 184750532 -17577815 + AT_rich Low_complexity Low_complexity 1 24 0 1688 176 0 14 chr4 184751055 184751344 -17577003 + AluJb SINE Alu 13 297 -15 715 262 81 24 chr4 184751513 184751761 -17576586 - MIR SINE MIR 0 262 1 2426 65 0 26 chr4 184751836 184752143 -17576204 - AluY SINE Alu -12 299 1 1856 101 134 0 chr4 184752711 184752987 -17575360 - AluSq SINE Alu 0 313 1 2913 160 56 12 chr4 184753010 184753579 -17574768 - LTR49 LTR ERV1 0 595 2 14105 130 27 49 chr4 184753580 184756244 -17572103 - HUERS-P1 LTR ERV1 0 6331 3726 772 187 49 53 chr4 184756260 184756631 -17571716 - HUERS-P1 LTR ERV1 -1987 3594 2679 1818 189 5 52 chr4 184756634 184757042 -17571305 - LTR49-int LTR ERV1 -2898 3433 3045 250 318 197 18 chr4 184757128 184757574 -17570773 - L2 LINE L2 -1129 2185 1660 204 283 0 17 chr4 184758727 184758787 -17569560 + (TG)n Simple_repeat Simple_repeat 1 59 0 202 298 18 0 chr4 184759004 184759061 -17569286 - L2 LINE L2 0 3313 3256 206 136 34 51 chr4 184759354 184759413 -17568934 + T-rich Low_complexity Low_complexity 3 60 0 354 23 0 0 chr4 184759758 184759801 -17568546 + (TG)n Simple_repeat Simple_repeat 2 44 0 500 192 29 10 chr4 184760658 184760762 -17567585 - MER93b LTR ERV1 -26 347 242 869 137 14 0 chr4 184760770 184760909 -17567438 - L1PA16 LINE L1 -10 6156 6016 204 109 36 18 chr4 184760918 184760973 -17567374 + (TA)n Simple_repeat Simple_repeat 2 57 0 1708 138 40 3 chr4 184760983 184761291 -17567056 - L1PA16 LINE L1 -163 6003 5684 449 322 0 0 chr4 184762590 184762770 -17565577 + A-rich Low_complexity Low_complexity 1 180 0 322 248 50 33 chr4 184762948 184763069 -17565278 - Charlie1 DNA MER1_type -1 2760 2638 * 1789 167 48 82 chr4 184763068 184763179 -17565168 - Charlie1 DNA MER1_type -1746 1015 902 2139 125 10 3 chr4 184763179 184763490 -17564857 - AluSq SINE Alu 0 313 1 1789 167 48 82 chr4 184763490 184763815 -17564532 - Charlie1 DNA MER1_type -1859 902 594 328 167 13 13 chr4 184763818 184763896 -17564451 + CT-rich Low_complexity Low_complexity 3 80 0 4639 182 60 25 chr4 184763898 184764982 -17563365 - L1MC2 LINE L1 -18 6326 5204 22 0 0 0 chr4 184764989 184765011 -17563336 + AT_rich Low_complexity Low_complexity 1 22 0 4335 28 0 2 chr4 184765452 184765957 -17562390 - L1PA5 LINE L1 -261 5893 5390 1801 42 0 0 chr4 184765957 184766171 -17562176 + L1PA5 LINE L1 5928 6142 -12 377 80 53 0 chr4 184766182 184766257 -17562090 + (TA)n Simple_repeat Simple_repeat 1 79 0 345 235 208 34 chr4 184766884 184766916 -17561431 + MER5B DNA MER1_type 3 28 -150 1756 134 41 21 chr4 184766916 184767207 -17561140 - AluJo SINE Alu -10 302 6 345 235 208 34 chr4 184767207 184767323 -17561024 + MER5B DNA MER1_type 28 177 -1 250 350 37 12 chr4 184767427 184767590 -17560757 - MIR SINE MIR -8 254 88 2425 67 3 0 chr4 184767654 184767954 -17560393 - AluSp SINE Alu -12 301 1 274 223 126 10 chr4 184768886 184768989 -17559358 - MIR SINE MIR 0 262 148 2535 52 0 3 chr4 184769117 184769424 -17558923 + AluY SINE Alu 1 306 -5 290 359 81 67 chr4 184769674 184770031 -17558316 + L2 LINE L2 2616 2977 -337 353 373 63 0 chr4 184770164 184770306 -17558041 + L2 LINE L2 3080 3230 -42 1724 175 0 14 chr4 184770329 184770621 -17557726 - AluJo SINE Alu -24 288 1 720 309 103 39 chr4 184771389 184771904 -17556443 - MLT1K LTR MaLR -4 584 37 622 253 128 82 chr4 184771996 184772450 -17555897 + MLT1H LTR MaLR 75 549 0 4447 185 5 20 chr4 184773326 184773681 -17554666 + L1MB3 LINE L1 5185 5544 -639 2650 23 0 3 chr4 184773681 184773987 -17554360 + AluY SINE Alu 1 305 -6 4447 185 5 20 chr4 184773987 184774673 -17553674 + L1MB3 LINE L1 5544 6176 -7 1383 210 19 19 chr4 184775352 184775675 -17552672 - AluJo SINE Alu 0 334 12 22 80 0 0 chr4 184775684 184775734 -17552613 + AT_rich Low_complexity Low_complexity 1 50 0 24 0 0 0 chr4 184776248 184776272 -17552075 + AT_rich Low_complexity Low_complexity 1 24 0 2195 214 59 65 chr4 184776489 184777129 -17551218 + L1MC4 LINE L1 7151 7787 -255 632 202 0 16 chr4 184777129 184777253 -17551094 - FLAM_A SINE Alu -11 122 1 2195 214 59 65 chr4 184777253 184777375 -17550972 + L1MC4 LINE L1 7787 7908 -134 338 184 184 20 chr4 184777462 184777560 -17550787 + L1MC4 LINE L1 7928 8041 -1 1650 167 3 35 chr4 184779315 184779632 -17548715 + AluJb SINE Alu 1 307 -5 421 254 74 41 chr4 184780280 184780402 -17547945 - L2 LINE L2 0 3313 3188 226 71 24 24 chr4 184780414 184780456 -17547891 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 587 98 11 0 chr4 184780527 184780619 -17547728 + (TGGA)n Simple_repeat Simple_repeat 1 93 0 671 154 21 35 chr4 184780646 184780985 -17547362 + (TAGA)n Simple_repeat Simple_repeat 1 334 0 448 328 23 6 chr4 184781000 184781171 -17547176 - L2 LINE L2 -144 3169 2996 1677 57 27 4 chr4 184781180 184781498 -17546849 + L1P3 LINE L1 5160 5483 -689 21 57 0 0 chr4 184781635 184781670 -17546677 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr4 184781898 184781935 -17546412 + AT_rich Low_complexity Low_complexity 1 37 0 330 281 48 34 chr4 184782809 184782955 -17545392 - MLT1K LTR MaLR -7 581 434 311 368 9 0 chr4 184783419 184783525 -17544822 - MER81 DNA DNA -7 107 1 1969 144 3 0 chr4 184783991 184784283 -17544064 + AluSx SINE Alu 1 293 -19 244 375 77 50 chr4 184784446 184784769 -17543578 + L2 LINE L2 2941 3272 0 23 33 0 0 chr4 184784873 184784903 -17543444 + AT_rich Low_complexity Low_complexity 1 30 0 198 229 100 29 chr4 184786436 184786506 -17541841 - MIR SINE MIR -119 143 69 1813 163 27 0 chr4 184787059 184787187 -17541160 + AluSx SINE Alu 1 124 -188 291 54 0 0 chr4 184787187 184787224 -17541123 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 1813 163 27 0 chr4 184787224 184787396 -17540951 + AluSx SINE Alu 124 309 -3 500 274 107 40 chr4 184787408 184787660 -17540687 - Charlie8 DNA MER1_type -2147 270 2 189 0 0 0 chr4 184789060 184789081 -17539266 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1448 206 21 3 chr4 184789126 184789408 -17538939 + AluJo SINE Alu 1 287 -25 2062 95 25 3 chr4 184789413 184789697 -17538650 - AluSg SINE Alu -15 295 6 566 191 146 92 chr4 184789988 184790195 -17538152 + LTR37A LTR ERV1 23 253 -173 1950 95 0 7 chr4 184790195 184790522 -17537825 + AluY SINE Alu 1 325 0 566 191 146 92 chr4 184790522 184790607 -17537740 + LTR37A LTR ERV1 253 332 -94 23 0 0 0 chr4 184790819 184790842 -17537505 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 184791174 184791202 -17537145 + AT_rich Low_complexity Low_complexity 1 28 0 201 74 0 0 chr4 184791314 184791341 -17537006 + (T)n Simple_repeat Simple_repeat 1 27 0 24 0 0 0 chr4 184791989 184792013 -17536334 + AT_rich Low_complexity Low_complexity 1 24 0 325 306 25 25 chr4 184792280 184792401 -17535946 - LTR16B LTR ERVL -343 121 1 1946 230 63 0 chr4 184792522 184793013 -17535334 + MER63C DNA MER1_type 4 525 -405 1103 198 5 0 chr4 184793046 184793238 -17535109 + MER58A DNA MER1_type 32 224 0 880 237 0 9 chr4 184793246 184793457 -17534890 + MER3 DNA MER1_type 1 209 0 1673 203 52 20 chr4 184793457 184793526 -17534821 + MER63C DNA MER1_type 518 583 -477 2707 152 16 0 chr4 184793526 184793967 -17534380 + MER83 LTR ERV1 1 448 0 1673 203 52 20 chr4 184793967 184794297 -17534050 + MER63C DNA MER1_type 583 930 0 250 301 75 30 chr4 184794839 184795038 -17533309 + L1MEd LINE L1 988 1195 -4924 29 94 0 0 chr4 184795372 184795457 -17532890 + AT_rich Low_complexity Low_complexity 1 85 0 1881 74 0 12 chr4 184795573 184795817 -17532530 - AluSc SINE Alu -10 299 59 266 290 54 48 chr4 184796132 184796318 -17532029 - MIR3 SINE MIR -5 203 17 356 221 29 79 chr4 184796548 184796688 -17531659 + Charlie8 DNA MER1_type 58 190 -2227 25 31 0 0 chr4 184797187 184797219 -17531128 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 184797255 184797276 -17531071 + AT_rich Low_complexity Low_complexity 1 21 0 197 260 20 0 chr4 184797648 184797698 -17530649 + L2 LINE L2 2440 2490 -824 230 333 179 5 chr4 184797742 184797943 -17530404 + L2 LINE L2 2599 2834 -480 211 317 49 0 chr4 184798189 184798271 -17530076 + L2 LINE L2 3187 3272 0 243 221 52 26 chr4 184799848 184799925 -17528422 + L1ME LINE L1 5650 5728 -393 619 316 91 54 chr4 184799959 184800483 -17527864 - L2 LINE L2 -1 3312 2778 24 0 0 0 chr4 184801209 184801233 -17527114 + AT_rich Low_complexity Low_complexity 1 24 0 245 284 78 0 chr4 184801512 184801614 -17526733 + MER112 DNA MER1_type 3 112 -148 29 78 0 0 chr4 184801656 184801720 -17526627 + AT_rich Low_complexity Low_complexity 1 64 0 242 231 139 37 chr4 184803576 184803684 -17524663 + MIR SINE MIR 144 262 0 323 242 0 0 chr4 184803895 184803961 -17524386 - L2 LINE L2 0 3313 3248 185 390 51 8 chr4 184804027 184804145 -17524202 + L2 LINE L2 2919 3041 -231 225 308 15 15 chr4 184804153 184804218 -17524129 - MER5A DNA MER1_type 0 189 125 1577 47 0 26 chr4 184804218 184804411 -17523936 + AluY SINE Alu 100 287 -24 180 0 0 0 chr4 184804425 184804445 -17523902 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 292 237 0 0 chr4 184804716 184804775 -17523572 - MIR SINE MIR -108 154 96 243 118 0 0 chr4 184805606 184805640 -17522707 - MER21B LTR ERV1 -690 173 140 288 0 0 0 chr4 184805733 184805765 -17522582 + (TA)n Simple_repeat Simple_repeat 1 32 0 463 271 154 8 chr4 184806277 184806524 -17521823 - HAL1b LINE L1 -245 1103 821 1493 214 101 28 chr4 184807423 184807858 -17520489 - MLT1C LTR MaLR 0 467 1 3935 198 57 9 chr4 184808715 184809489 -17518858 - MER21B LTR ERV1 -52 811 1 697 247 49 75 chr4 184809917 184810184 -17518163 - MIR SINE MIR 0 262 3 311 95 0 0 chr4 184811181 184811223 -17517124 - MSTD LTR MaLR 0 396 355 1369 201 50 105 chr4 184811228 184811627 -17516720 - MSTD LTR MaLR -19 377 1 21 0 0 0 chr4 184811893 184811914 -17516433 + AT_rich Low_complexity Low_complexity 1 21 0 1138 216 69 48 chr4 184811943 184812123 -17516224 - MER2 DNA MER2_type -4 341 149 1997 131 24 39 chr4 184812123 184812504 -17515843 + THE1C LTR MaLR 1 375 0 1138 216 69 48 chr4 184812504 184812657 -17515690 - MER2 DNA MER2_type -196 149 1 2170 110 3 13 chr4 184812739 184813040 -17515307 - AluSx SINE Alu -14 298 1 2890 168 18 36 chr4 184813076 184813689 -17514658 - L1MB7 LINE L1 -17 6167 5566 25 0 0 0 chr4 184814323 184814348 -17513999 + AT_rich Low_complexity Low_complexity 1 25 0 260 175 32 16 chr4 184815410 184815473 -17512874 - L1ME4a LINE L1 0 6121 6058 2413 60 0 3 chr4 184815907 184816208 -17512139 + AluY SINE Alu 1 300 -11 22 0 0 0 chr4 184816358 184816380 -17511967 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 184816594 184816622 -17511725 + AT_rich Low_complexity Low_complexity 1 28 0 181 257 19 124 chr4 184817512 184817617 -17510730 + MIR3 SINE MIR 112 205 -3 400 256 25 16 chr4 184817653 184817774 -17510573 + L2 LINE L2 3192 3313 0 33 25 0 0 chr4 184818603 184818643 -17509704 + AT_rich Low_complexity Low_complexity 1 40 0 183 222 0 0 chr4 184818703 184818748 -17509599 + A-rich Low_complexity Low_complexity 1 45 0 225 0 0 0 chr4 184818823 184818848 -17509499 + (A)n Simple_repeat Simple_repeat 1 25 0 27 0 0 0 chr4 184819038 184819065 -17509282 + AT_rich Low_complexity Low_complexity 1 27 0 195 184 0 0 chr4 184819127 184819165 -17509182 + A-rich Low_complexity Low_complexity 1 38 0 225 0 0 0 chr4 184819247 184819272 -17509075 + (A)n Simple_repeat Simple_repeat 1 25 0 37 52 0 0 chr4 184819611 184819669 -17508678 + AT_rich Low_complexity Low_complexity 1 58 0 191 96 0 96 chr4 184822864 184822916 -17505431 + MIR3 SINE MIR 162 208 0 184 397 59 7 chr4 184823904 184824040 -17504307 - L2 LINE L2 -62 3210 3068 231 282 77 39 chr4 184824064 184824245 -17504102 - L2 LINE L2 -175 3097 2910 539 130 20 41 chr4 184824282 184824428 -17503919 + CT-rich Low_complexity Low_complexity 3 145 0 841 143 99 6 chr4 184824452 184824613 -17503734 - FRAM SINE Alu 0 176 1 1658 137 114 7 chr4 184825159 184825430 -17502917 + AluSg SINE Alu 1 300 -10 4519 60 23 5 chr4 184825439 184826448 -17501899 + MER11A LTR ERVK 2 1266 0 243 115 51 26 chr4 184826994 184827072 -17501275 + (TA)n Simple_repeat Simple_repeat 1 80 0 2248 108 0 0 chr4 184829924 184830219 -17498128 - AluSc SINE Alu -14 295 1 198 131 0 66 chr4 184830721 184830782 -17497565 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 713 120 0 39 chr4 184831694 184832710 -17495637 + (TA)n Simple_repeat Simple_repeat 1 976 0 672 313 74 92 chr4 184833212 184833973 -17494374 + L2 LINE L2 2148 2894 -420 348 125 18 0 chr4 184834710 184834766 -17493581 + L2 LINE L2 3257 3313 0 201 152 0 0 chr4 184834766 184834799 -17493548 + (AATAG)n Simple_repeat Simple_repeat 5 37 0 2169 180 24 39 chr4 184834812 184835279 -17493068 + MLT1C LTR MaLR 3 462 -5 1358 110 17 107 chr4 184835977 184836074 -17492273 + HSMAR2 DNA Mariner 1026 1130 -172 1658 185 16 13 chr4 184836074 184836200 -17492147 + AluJo SINE Alu 1 125 -187 180 0 0 0 chr4 184836200 184836220 -17492127 + (TA)n Simple_repeat Simple_repeat 2 21 0 1658 185 16 13 chr4 184836220 184836401 -17491946 + AluJo SINE Alu 125 309 -3 1358 110 17 107 chr4 184836401 184836603 -17491744 + HSMAR2 DNA Mariner 1130 1298 -4 31 44 0 0 chr4 184836606 184836651 -17491696 + AT_rich Low_complexity Low_complexity 1 45 0 253 313 0 0 chr4 184836673 184836740 -17491607 + GA-rich Low_complexity Low_complexity 1 67 0 2268 112 0 0 chr4 184837432 184837735 -17490612 - AluSq SINE Alu -7 306 4 21 36 0 0 chr4 184837871 184837899 -17490448 + AT_rich Low_complexity Low_complexity 1 28 0 405 237 199 19 chr4 184838369 184838525 -17489822 - L1ME3A LINE L1 -8 6162 5979 717 176 112 6 chr4 184838752 184838922 -17489425 - MER5A DNA MER1_type 0 189 2 1919 121 4 0 chr4 184838990 184839263 -17489084 - AluSx SINE Alu -17 295 22 1978 101 36 42 chr4 184839314 184839620 -17488727 - AluSc SINE Alu -3 306 3 1535 148 66 4 chr4 184839622 184839879 -17488468 - AluJb SINE Alu -10 302 30 935 163 47 5 chr4 184840185 184840375 -17487972 + L1MA3 LINE L1 6108 6305 0 21 0 0 0 chr4 184840468 184840489 -17487858 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr4 184841255 184841290 -17487057 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 184842171 184842192 -17486155 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr4 184842308 184842350 -17485997 + AT_rich Low_complexity Low_complexity 1 42 0 1822 162 0 28 chr4 184842364 184842685 -17485662 + AluJb SINE Alu 1 312 0 599 127 85 0 chr4 184843940 184844058 -17484289 - L1MA7 LINE L1 -1 6290 6163 494 41 0 27 chr4 184844167 184844240 -17484107 - L1PA3 LINE L1 -1 6154 6084 2234 84 7 0 chr4 184844772 184845059 -17483288 + AluSc SINE Alu 1 289 -20 871 112 0 0 chr4 184845566 184845682 -17482665 + AluSg/x SINE Alu 164 279 -33 22 0 0 0 chr4 184846168 184846190 -17482157 + AT_rich Low_complexity Low_complexity 1 22 0 216 213 0 0 chr4 184847013 184847074 -17481273 + (TA)n Simple_repeat Simple_repeat 2 62 0 479 322 92 86 chr4 184847462 184848240 -17480107 - L2 LINE L2 0 3313 2542 1613 159 6 60 chr4 184848240 184848554 -17479793 - AluJb SINE Alu -15 297 1 479 322 92 86 chr4 184848554 184848720 -17479627 - L2 LINE L2 -771 2542 2378 2304 66 3 3 chr4 184848758 184849047 -17479300 + AluSp SINE Alu 1 289 -24 1867 118 0 11 chr4 184850205 184850475 -17477872 + AluSx SINE Alu 1 267 -45 490 351 32 11 chr4 184853883 184854068 -17474279 - MIR3 SINE MIR -4 204 16 31 76 0 0 chr4 184854237 184854303 -17474044 + AT_rich Low_complexity Low_complexity 1 66 0 859 224 100 17 chr4 184854524 184854823 -17473524 - L1MC5 LINE L1 -30 7931 7608 26 30 0 0 chr4 184854922 184854955 -17473392 + AT_rich Low_complexity Low_complexity 1 33 0 318 325 134 12 chr4 184855277 184855523 -17472824 + L2 LINE L2 516 791 -2523 374 255 163 60 chr4 184855554 184855805 -17472542 - LTR40b LTR ERVL -6 456 180 614 283 75 102 chr4 184856093 184856129 -17472218 + L2 LINE L2 808 843 -2471 1297 134 26 30 chr4 184856129 184856360 -17471987 + MER30 DNA MER1_type 1 230 0 614 283 75 102 chr4 184856360 184856765 -17471582 + L2 LINE L2 843 1237 -2077 2762 164 42 35 chr4 184856909 184857415 -17470932 + MLT2B3 LTR ERVL 1 513 -41 405 0 0 0 chr4 184857415 184857460 -17470887 + (TCTA)n Simple_repeat Simple_repeat 3 47 0 2762 164 42 35 chr4 184857460 184857503 -17470844 + MLT2B3 LTR ERVL 513 554 0 18794 189 23 17 chr4 184857847 184860883 -17467464 + L1PA13 LINE L1 1 3020 -3794 441 0 0 0 chr4 184860883 184860932 -17467415 + (TG)n Simple_repeat Simple_repeat 2 50 0 18794 189 23 17 chr4 184860932 184864657 -17463690 + L1PA13 LINE L1 3020 6813 -1 1352 221 69 25 chr4 184864822 184865256 -17463091 - Charlie1b DNA MER1_type -69 454 2 515 293 83 26 chr4 184866452 184866681 -17461666 + MIR SINE MIR 20 261 -1 180 163 265 0 chr4 184866987 184867036 -17461311 + MER5A DNA MER1_type 51 112 -77 348 194 0 75 chr4 184867102 184867195 -17461152 - MER81 DNA DNA 0 114 29 5123 67 3 24 chr4 184867987 184868693 -17459654 - L1PA8 LINE L1 0 6172 5482 1972 145 0 3 chr4 184868920 184869223 -17459124 + AluSx SINE Alu 3 304 0 29 60 0 0 chr4 184869400 184869450 -17458897 + AT_rich Low_complexity Low_complexity 1 50 0 1689 126 84 0 chr4 184870292 184870578 -17457769 - AluSq SINE Alu -3 310 1 225 346 56 25 chr4 184871152 184871314 -17457033 + L2 LINE L2 2916 3082 -190 218 375 0 12 chr4 184871437 184871517 -17456830 - L2 LINE L2 0 3272 3194 35 0 0 0 chr4 184872503 184872538 -17455809 + GC_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 184873243 184873265 -17455082 + AT_rich Low_complexity Low_complexity 1 22 0 25 75 0 0 chr4 184873310 184873363 -17454984 + AT_rich Low_complexity Low_complexity 1 53 0 2137 105 6 13 chr4 184874895 184875208 -17453139 + AluSx SINE Alu 1 311 -1 23 0 0 0 chr4 184875822 184875845 -17452502 + AT_rich Low_complexity Low_complexity 1 23 0 205 305 17 0 chr4 184876591 184876650 -17451697 - MIR3 SINE MIR -28 180 121 1533 161 57 23 chr4 184877094 184877393 -17450954 - AluJo SINE Alu -3 309 1 225 0 0 0 chr4 184877394 184877419 -17450928 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 2259 102 20 0 chr4 184877889 184878192 -17450155 - AluSg SINE Alu -1 309 1 407 335 102 28 chr4 184878893 184879069 -17449278 - MER5A DNA MER1_type 0 189 1 250 359 122 13 chr4 184879510 184879666 -17448681 + L2 LINE L2 2889 3061 -252 7561 27 10 0 chr4 184879684 184880842 -17447505 - L1PA4 LINE L1 -3 6152 4991 197 105 0 26 chr4 184880975 184881013 -17447334 + (TA)n Simple_repeat Simple_repeat 2 38 0 1530 192 7 17 chr4 184881035 184881326 -17447021 - AluJo SINE Alu -18 294 7 198 0 0 0 chr4 184881388 184881410 -17446937 + (T)n Simple_repeat Simple_repeat 1 22 0 258 245 0 0 chr4 184881418 184881467 -17446880 + L2 LINE L2 3224 3272 0 329 258 50 57 chr4 184882121 184882280 -17446067 - HAL1b LINE L1 -677 671 514 1283 187 26 30 chr4 184882300 184882568 -17445779 + AluJo SINE Alu 32 298 -14 21 0 0 0 chr4 184882785 184882806 -17445541 + AT_rich Low_complexity Low_complexity 1 21 0 240 271 12 0 chr4 184882806 184882891 -17445456 - L1MC4 LINE L1 -1339 6703 6618 229 253 0 35 chr4 184882972 184883059 -17445288 + T-rich Low_complexity Low_complexity 2 85 0 234 0 0 0 chr4 184883733 184883759 -17444588 + (T)n Simple_repeat Simple_repeat 1 26 0 239 325 103 78 chr4 184884188 184884508 -17443839 - MLT1K LTR MaLR -6 582 255 1079 199 46 18 chr4 184884532 184884814 -17443533 - L1ME1 LINE L1 -186 5980 5691 22 0 0 0 chr4 184884814 184884836 -17443511 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 184885227 184885257 -17443090 + AT_rich Low_complexity Low_complexity 1 30 0 3162 159 42 8 chr4 184885326 184885948 -17442399 - L1MA5 LINE L1 -1 6299 5657 2091 147 15 77 chr4 184886224 184886680 -17441667 - MSTC LTR MaLR 0 428 1 1227 286 79 41 chr4 184886715 184887198 -17441149 - L2 LINE L2 -894 2420 1920 325 368 20 72 chr4 184887710 184887960 -17440387 + L2 LINE L2 2647 2883 -431 467 311 24 48 chr4 184888340 184888588 -17439759 - MLT1L LTR MaLR -369 246 5 22 0 0 0 chr4 184889669 184889691 -17438656 + AT_rich Low_complexity Low_complexity 1 22 0 2510 274 89 32 chr4 184889963 184890711 -17437636 - L1ME3A LINE L1 -168 6282 5578 1998 178 60 22 chr4 184890711 184891127 -17437220 - MSTB1 LTR MaLR 0 432 1 2510 274 89 32 chr4 184891127 184891330 -17437017 - L1ME3A LINE L1 -872 5578 5388 306 20 59 0 chr4 184891330 184891381 -17436966 + (TA)n Simple_repeat Simple_repeat 1 54 0 2510 274 89 32 chr4 184891381 184893274 -17435073 - L1ME3A LINE L1 -1062 5388 2518 21 0 0 0 chr4 184893359 184893380 -17434967 + AT_rich Low_complexity Low_complexity 1 21 0 336 300 98 49 chr4 184893387 184893674 -17434673 - L1ME3A LINE L1 -4221 2386 2086 21 0 0 0 chr4 184893680 184893701 -17434646 + AT_rich Low_complexity Low_complexity 1 21 0 249 289 77 58 chr4 184893758 184893966 -17434381 - L1ME3A LINE L1 -4659 1948 1737 336 349 118 9 chr4 184893985 184894214 -17434133 - L1ME3A LINE L1 -4938 1488 1235 254 265 61 46 chr4 184894229 184894425 -17433922 - L1ME3A LINE L1 -5050 1379 1181 1905 149 14 0 chr4 184894432 184894721 -17433626 - AluSx SINE Alu -19 293 1 26 0 0 0 chr4 184894721 184894747 -17433600 + AT_rich Low_complexity Low_complexity 1 26 0 633 219 8 16 chr4 184894885 184895008 -17433339 + FLAM_A SINE Alu 4 125 -8 436 188 62 69 chr4 184895804 184895948 -17432399 - L1ME3A LINE L1 -147 6023 5881 2018 172 52 35 chr4 184896652 184897077 -17431270 + MSTB1 LTR MaLR 1 432 0 3194 127 22 6 chr4 184897222 184897725 -17430622 - MER9 LTR ERVK 0 511 1 6464 207 65 3 chr4 184897725 184899337 -17429010 + L1 LINE L1 2636 4404 -1742 2103 138 0 0 chr4 184899337 184899648 -17428699 + AluSx SINE Alu 1 311 -1 6464 207 65 3 chr4 184899648 184899989 -17428358 + L1 LINE L1 4404 4722 -1424 214 169 14 56 chr4 184900046 184900117 -17428230 + T-rich Low_complexity Low_complexity 5 72 0 185 394 92 14 chr4 184901002 184901144 -17427203 - L2 LINE L2 -208 3064 2912 285 315 62 92 chr4 184901183 184901618 -17426729 - L2 LINE L2 -665 2649 2228 357 288 14 14 chr4 184902170 184902316 -17426031 + CT-rich Low_complexity Low_complexity 3 148 0 29 0 0 0 chr4 184903420 184903449 -17424898 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 184903841 184903863 -17424484 + AT_rich Low_complexity Low_complexity 1 22 0 438 20 0 0 chr4 184904298 184904349 -17423998 + (CA)n Simple_repeat Simple_repeat 2 52 0 23 33 0 0 chr4 184905042 184905072 -17423275 + AT_rich Low_complexity Low_complexity 1 30 0 2416 212 8 4 chr4 184905676 184906152 -17422195 + L1MC1 LINE L1 17 494 -5932 385 215 33 50 chr4 184906150 184906176 -17422171 - L1MA6 LINE L1 -1 6299 6274 * 5070 167 12 8 chr4 184906176 184907681 -17420666 - L1PB4 LINE L1 -7 6149 4636 2403 169 78 2 chr4 184907682 184908156 -17420191 + L1MC1 LINE L1 482 991 -5435 3096 210 32 4 chr4 184908158 184909272 -17419075 + L1MC1 LINE L1 4976 6124 -500 * 11715 188 64 8 chr4 184909269 184912669 -17415678 + L1MB3 LINE L1 48 3639 -2743 2873 213 24 50 chr4 184912723 184913251 -17415096 + L1MB3 LINE L1 4935 5475 -944 1405 196 57 0 chr4 184913251 184913531 -17414816 + AluJo SINE Alu 1 296 -6 2873 213 24 50 chr4 184913531 184914238 -17414109 + L1MB3 LINE L1 5475 6107 -312 556 204 0 35 chr4 184914238 184914380 -17413967 - L1 LINE L1 -805 5341 5205 938 154 13 13 chr4 184914401 184914636 -17413711 + CT-rich Low_complexity Low_complexity 1 235 0 446 178 0 0 chr4 184914637 184914710 -17413637 - FRAM SINE Alu -31 145 73 579 129 30 0 chr4 184914710 184914811 -17413536 + L1MB4 LINE L1 6077 6180 0 2459 158 21 25 chr4 184914822 184915303 -17413044 + L1MC1 LINE L1 6095 6573 -40 1708 169 24 0 chr4 184915373 184915668 -17412679 - AluJo SINE Alu -10 302 1 2168 78 51 0 chr4 184916709 184917004 -17411343 - AluY SINE Alu -1 310 1 2267 113 0 0 chr4 184917821 184918131 -17410216 - AluSx SINE Alu -2 310 1 288 269 15 60 chr4 184920029 184920163 -17408184 + MIR SINE MIR 86 213 -49 291 337 36 4 chr4 184921622 184921808 -17406539 - MIR SINE MIR 0 262 7 1907 131 71 3 chr4 184921812 184922148 -17406199 + MER46B DNA MER2_type 3 236 0 1973 94 0 124 chr4 184922554 184922893 -17405454 + AluSq SINE Alu 1 297 -16 2080 137 3 0 chr4 184922921 184923242 -17405105 - Tigger2 DNA MER2_type 0 2718 2397 2602 29 7 3 chr4 184924874 184925184 -17403163 + AluY SINE Alu 1 311 0 2180 127 0 13 chr4 184925381 184925695 -17402652 + AluSx SINE Alu 1 310 -2 516 254 164 39 chr4 184926444 184926676 -17401671 - MIR SINE MIR 0 262 2 281 257 131 29 chr4 184926828 184927034 -17401313 + L1ME4a LINE L1 5734 5960 -161 185 333 0 0 chr4 184927561 184927609 -17400738 - MIR SINE MIR -70 138 91 2232 122 3 0 chr4 184927815 184928127 -17400220 - AluSq SINE Alu 0 313 1 2046 136 83 0 chr4 184928348 184928686 -17399661 - MER47A DNA MER2_type 0 366 1 203 289 0 66 chr4 184928869 184928945 -17399402 + L2 LINE L2 3200 3270 -2 2507 138 35 35 chr4 184930100 184930526 -17397821 - MSTB LTR MaLR 0 426 1 2395 71 3 0 chr4 184931031 184931328 -17397019 - AluY SINE Alu -13 298 1 22 0 0 0 chr4 184932099 184932121 -17396226 + AT_rich Low_complexity Low_complexity 1 22 0 246 304 104 31 chr4 184932389 184932660 -17395687 - MLT1L LTR MaLR -11 604 230 2349 60 0 7 chr4 184933048 184933368 -17394979 - AluY SINE Alu 0 318 1 210 301 123 0 chr4 184934326 184934399 -17393948 - L2 LINE L2 0 3313 3232 739 43 0 0 chr4 184935421 184935515 -17392832 + AluSp/q SINE Alu 215 308 -5 27 0 0 0 chr4 184937219 184937246 -17391101 + AT_rich Low_complexity Low_complexity 1 27 0 276 262 49 0 chr4 184937412 184937473 -17390874 + L2 LINE L2 3250 3313 0 2277 99 0 3 chr4 184937910 184938214 -17390133 + AluSq SINE Alu 1 303 -10 41 0 0 19 chr4 184938668 184938690 -17389657 + AT_rich Low_complexity Low_complexity 1 22 -29 1933 116 0 8 chr4 184938690 184938957 -17389390 + AluSc SINE Alu 21 285 -24 41 0 0 19 chr4 184938957 184938986 -17389361 + AT_rich Low_complexity Low_complexity 22 51 0 25 0 0 0 chr4 184939171 184939196 -17389151 + AT_rich Low_complexity Low_complexity 1 25 0 326 207 92 11 chr4 184939824 184939911 -17388436 + L1MC4 LINE L1 6613 6706 -1336 1097 89 0 19 chr4 184940577 184940735 -17387612 + AluY SINE Alu 155 309 -2 462 200 0 11 chr4 184944210 184944305 -17384042 - MER103 DNA DNA -7 159 66 334 186 0 0 chr4 184944424 184944483 -17383864 - MER58B DNA MER1_type 0 341 283 600 136 286 0 chr4 184944485 184944632 -17383715 - MER53 DNA DNA 0 189 1 774 208 52 26 chr4 184944634 184944826 -17383521 - MER58B DNA MER1_type -51 290 94 1421 115 10 5 chr4 184944828 184945037 -17383310 + AluSx SINE Alu 27 236 -76 896 189 6 0 chr4 184945139 184945314 -17383033 + AluSg/x SINE Alu 127 302 -8 358 310 0 0 chr4 184945314 184945385 -17382962 - MER58B DNA MER1_type -263 78 8 26 30 0 0 chr4 184945991 184946024 -17382323 + AT_rich Low_complexity Low_complexity 1 33 0 731 273 68 12 chr4 184946153 184946402 -17381945 - L1ME3A LINE L1 -4 6166 5904 212 272 27 120 chr4 184946816 184947000 -17381347 - L2 LINE L2 -571 2743 2577 221 281 0 0 chr4 184947101 184947158 -17381189 + A-rich Low_complexity Low_complexity 1 57 0 348 297 119 5 chr4 184947258 184947477 -17380870 + L1M4 LINE L1 4697 4940 -1206 1882 184 71 32 chr4 184947497 184947936 -17380411 - LTR2B LTR ERV1 0 490 35 2157 231 76 20 chr4 184948076 184948669 -17379678 - MLT1E2 LTR MaLR 0 626 1 28 48 0 0 chr4 184948692 184948734 -17379613 + AT_rich Low_complexity Low_complexity 1 42 0 2392 88 0 0 chr4 184948785 184949081 -17379266 - AluSg SINE Alu -14 296 1 312 338 50 60 chr4 184949118 184949319 -17379028 + L1ME3A LINE L1 5969 6167 -3 188 186 85 17 chr4 184951216 184951275 -17377072 + L3 LINE CR1 405 467 -1110 236 273 0 0 chr4 184951495 184951550 -17376797 + MER5A DNA MER1_type 128 182 -7 1171 212 33 4 chr4 184951589 184951830 -17376517 + MER44D DNA MER2_type 4 251 -454 634 164 95 0 chr4 184951956 184952072 -17376275 + MER44D DNA MER2_type 606 604 -1 2160 90 10 13 chr4 184952256 184952567 -17375780 - AluSx SINE Alu -2 310 1 340 231 22 22 chr4 184953684 184953775 -17374572 - L2 LINE L2 -1 3312 3222 192 111 0 0 chr4 184953851 184953887 -17374460 + (T)n Simple_repeat Simple_repeat 1 36 0 1222 163 8 46 chr4 184953891 184954130 -17374217 + AluJo SINE Alu 1 230 -82 403 243 182 14 chr4 184954378 184954526 -17373821 + MER3 DNA MER1_type 37 209 0 * 900 171 142 0 chr4 184954526 184954573 -17373774 - MER3 DNA MER1_type -137 72 1 567 99 0 117 chr4 184954803 184954914 -17373433 + MER4A LTR ERV1 1 98 -566 1750 114 17 97 chr4 184954930 184955282 -17373065 + MER4A LTR ERV1 341 664 0 483 258 162 6 chr4 184955282 184955449 -17372898 + MIR SINE MIR 67 259 -3 1284 178 89 58 chr4 184955683 184955975 -17372372 - AluJb SINE Alu -11 301 1 947 263 198 22 chr4 184956034 184956616 -17371731 + LTR50 LTR ERVL 1 684 -111 2427 132 41 26 chr4 184956646 184957064 -17371283 + Tigger2a DNA MER2_type 11 434 0 275 222 32 0 chr4 184957067 184957130 -17371217 + LTR33A LTR ERVL 459 523 0 824 304 29 46 chr4 184957146 184957504 -17370843 - MERVL LTR ERVL -2164 2832 2478 2199 125 3 3 chr4 184957504 184957816 -17370531 + AluSx SINE Alu 1 312 0 824 304 29 46 chr4 184957816 184957901 -17370446 - MERVL LTR ERVL -2518 2478 2393 1409 281 23 13 chr4 184957911 184958299 -17370048 - LTR40a LTR ERVL -107 412 21 1646 188 0 14 chr4 184958749 184959031 -17369316 + AluJb SINE Alu 1 278 -34 2269 113 3 0 chr4 184959387 184959698 -17368649 + AluSq SINE Alu 1 312 -1 358 302 66 41 chr4 184959719 184959989 -17368358 - MLT1I LTR MaLR 0 446 131 861 210 145 69 chr4 184960541 184961046 -17367301 - MLT1H LTR MaLR -2 547 5 558 235 53 8 chr4 184961346 184961478 -17366869 - MER45A DNA AcHobo -1 177 40 243 79 0 0 chr4 184961594 184961632 -17366715 + (T)n Simple_repeat Simple_repeat 1 38 0 539 242 23 9 chr4 184962171 184962420 -17365927 + MER20 DNA MER1_type 3 219 0 1953 145 0 3 chr4 184964700 184964996 -17363351 + AluSx SINE Alu 1 295 -17 489 272 70 26 chr4 184965709 184965937 -17362410 - MLT1H LTR MaLR -307 242 5 1757 101 0 4 chr4 184965992 184966220 -17362127 - AluSc SINE Alu -82 227 1 636 78 0 26 chr4 184966351 184966467 -17361880 + (TA)n Simple_repeat Simple_repeat 1 113 0 1724 110 35 0 chr4 184966467 184966695 -17361652 - AluSx SINE Alu -56 256 21 1581 98 22 0 chr4 184966773 184966998 -17361349 + MER30 DNA MER1_type 1 230 0 2377 72 0 7 chr4 184969621 184969925 -17358422 - AluY SINE Alu -9 302 1 277 284 30 38 chr4 184970043 184970219 -17358128 + MIR SINE MIR 9 231 -31 240 218 339 0 chr4 184970836 184970960 -17357387 - MIR3 SINE MIR -22 186 21 2312 102 0 13 chr4 184971069 184971382 -17356965 - AluSx SINE Alu -3 309 1 974 109 0 0 chr4 184971386 184971514 -17356833 - AluSq/x SINE Alu -179 133 6 189 147 0 0 chr4 184972192 184972226 -17356121 + (A)n Simple_repeat Simple_repeat 1 34 0 2082 124 3 7 chr4 184972437 184972736 -17355611 - AluSx SINE Alu -14 298 1 298 94 125 0 chr4 184972759 184972823 -17355524 + ERVL LTR ERVL 4816 4887 -877 * 496 159 0 11 chr4 184972804 184972892 -17355455 + Ricksha DNA DNA 261 347 -2899 2444 141 45 93 chr4 184972893 184973474 -17354873 + MLT2B3 LTR ERVL 2 554 0 313 338 68 19 chr4 184973944 184974151 -17354196 + MIR SINE MIR 46 262 0 787 296 14 5 chr4 184974368 184974590 -17353757 - MIR SINE MIR -10 252 32 24 0 0 0 chr4 184975894 184975918 -17352429 + AT_rich Low_complexity Low_complexity 1 24 0 227 257 198 26 chr4 184976837 184977003 -17351344 + MIR SINE MIR 21 212 -50 1434 159 10 80 chr4 184978382 184978724 -17349623 + AluJo SINE Alu 1 312 0 23 0 0 0 chr4 184978955 184978978 -17349369 + AT_rich Low_complexity Low_complexity 1 23 0 2052 130 10 3 chr4 184978979 184979271 -17349076 - AluSq SINE Alu -19 294 1 375 191 221 66 chr4 184979308 184979444 -17348903 + MER69A DNA AcHobo 3 159 -18 461 242 188 7 chr4 184979810 184979959 -17348388 + MIR SINE MIR 47 222 -40 197 333 101 25 chr4 184980171 184980330 -17348017 + L2 LINE L2 2214 2384 -930 1339 273 245 24 chr4 184980501 184981498 -17346849 + L2 LINE L2 2077 3313 0 395 292 162 19 chr4 184981570 184981786 -17346561 + MIR SINE MIR 16 262 0 219 365 26 2 chr4 184981794 184981887 -17346460 - MIR SINE MIR -83 125 32 369 295 110 46 chr4 184982249 184982530 -17345817 - L1ME4a LINE L1 -187 5934 5636 21 0 0 0 chr4 184982643 184982664 -17345683 + AT_rich Low_complexity Low_complexity 1 21 0 806 224 12 18 chr4 184982695 184982865 -17345482 - FRAM SINE Alu -8 168 1 23 0 0 0 chr4 184983014 184983037 -17345310 + AT_rich Low_complexity Low_complexity 1 23 0 317 304 109 14 chr4 184983129 184983267 -17345080 + L2 LINE L2 3163 3313 0 2129 87 55 3 chr4 184984790 184985079 -17343268 + AluSx SINE Alu 1 304 -8 305 287 96 11 chr4 184985738 184985832 -17342515 + MIR3 SINE MIR 58 159 -49 31 26 0 0 chr4 184986121 184986159 -17342188 + AT_rich Low_complexity Low_complexity 1 38 0 201 359 51 0 chr4 184986364 184986442 -17341905 + L2 LINE L2 3107 3188 -84 631 189 66 38 chr4 184987828 184988040 -17340307 - L1MC5 LINE L1 -111 7850 7633 273 336 47 37 chr4 184988716 184988930 -17339417 - MLT2F LTR ERVL -232 431 216 433 327 71 33 chr4 184989117 184989481 -17338866 - L1 LINE L1 -2500 3646 3269 295 206 54 0 chr4 184989512 184989604 -17338743 - L1 LINE L1 -2929 3217 3121 260 326 106 82 chr4 184989644 184989772 -17338575 - L1 LINE L1 -3235 2911 2788 730 252 35 44 chr4 184989772 184989998 -17338349 + MER58A DNA MER1_type 1 224 0 260 326 106 82 chr4 184989998 184990389 -17337958 - L1 LINE L1 -3358 2788 2364 2014 150 3 3 chr4 184990389 184990695 -17337652 - AluSx SINE Alu 0 312 7 260 326 106 82 chr4 184990695 184990956 -17337391 - L1 LINE L1 -3782 2364 2111 1034 189 0 41 chr4 184991525 184991721 -17336626 + AluJo SINE Alu 1 188 -124 625 172 35 0 chr4 184991767 184991883 -17336464 + AluJo SINE Alu 190 309 -3 7210 51 2 1 chr4 184992056 184992951 -17335396 + L1PA6 LINE L1 5254 6149 -5 1154 280 100 47 chr4 184993575 184995014 -17333333 + L1ME3A LINE L1 3983 5530 -640 1702 184 26 3 chr4 184995014 184995318 -17333029 - AluJb SINE Alu -1 311 1 1154 280 100 47 chr4 184995318 184995534 -17332813 + L1ME3A LINE L1 5530 5733 -437 300 277 128 7 chr4 184995535 184995676 -17332671 + L1ME3A LINE L1 5793 5950 -220 2140 136 0 0 chr4 184995855 184996163 -17332184 - AluSx SINE Alu -4 308 1 2625 52 0 0 chr4 184996680 184996990 -17331357 + AluY SINE Alu 1 310 -1 361 337 69 26 chr4 184997460 184997612 -17330735 - MIR3 SINE MIR -48 160 2 309 273 11 11 chr4 184997689 184997777 -17330570 + MIR SINE MIR 154 241 -21 2804 13 0 6 chr4 184998177 184998489 -17329858 + AluYa5 SINE Alu 1 310 -1 2070 125 16 13 chr4 184998687 184998992 -17329355 + AluJo SINE Alu 7 312 0 218 333 53 0 chr4 184999348 184999423 -17328924 - L2 LINE L2 -1 3312 3234 204 263 78 106 chr4 184999661 184999840 -17328507 + MIR SINE MIR 13 186 -76 5321 177 25 25 chr4 185000331 185001746 -17326601 + L1PA16 LINE L1 4031 5446 -720 2282 86 0 0 chr4 185001746 185002050 -17326297 + AluSg SINE Alu 1 304 0 5321 177 25 25 chr4 185002050 185002763 -17325584 + L1PA16 LINE L1 5446 6157 -9 1579 152 8 0 chr4 185003554 185003804 -17324543 + AluJb SINE Alu 2 253 -59 225 293 71 10 chr4 185004676 185004775 -17323572 + MIR SINE MIR 20 124 -138 433 295 87 27 chr4 185005039 185005222 -17323125 - MIR SINE MIR -10 252 59 290 246 40 16 chr4 185007043 185007169 -17321178 - L1ME LINE L1 -395 5767 5639 27 29 0 0 chr4 185008374 185008408 -17319939 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr4 185009180 185009206 -17319141 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 185012903 185012924 -17315423 + AT_rich Low_complexity Low_complexity 1 21 0 5192 69 10 42 chr4 185013067 185014227 -17314120 - L1PA8A LINE L1 -155 5976 4873 337 294 88 59 chr4 185014460 185015173 -17313174 + L1MEd LINE L1 523 1296 -4867 1852 121 3 32 chr4 185015190 185015472 -17312875 + AluSc SINE Alu 1 274 -35 1328 86 58 13 chr4 185015589 185015874 -17312473 - LTR7 LTR ERV1 -63 387 1 242 359 19 25 chr4 185016252 185016411 -17311936 - LTR67 LTR ERVL -364 193 36 2432 94 0 0 chr4 185016472 185016779 -17311568 - AluSc SINE Alu -2 307 1 1593 213 79 113 chr4 185018886 185019208 -17309139 + LTR68 LTR ERV1 1 332 -408 1554 201 16 10 chr4 185019208 185019517 -17308830 + AluJo SINE Alu 1 311 -1 1593 213 79 113 chr4 185019517 185019955 -17308392 + LTR68 LTR ERV1 332 735 -5 552 95 53 21 chr4 185020005 185020100 -17308247 + MER4A LTR ERV1 1 98 -566 1611 132 14 30 chr4 185020100 185020449 -17307898 + MER4A LTR ERV1 263 664 0 2037 111 50 10 chr4 185020485 185020783 -17307564 - AluSx SINE Alu -2 310 1 21 0 0 0 chr4 185021451 185021472 -17306875 + AT_rich Low_complexity Low_complexity 1 21 0 1161 184 60 85 chr4 185021629 185021752 -17306595 + MLT1B LTR MaLR 3 128 -262 2210 94 0 48 chr4 185021752 185022061 -17306286 - AluSg SINE Alu -15 295 2 1161 184 60 85 chr4 185022061 185022302 -17306045 + MLT1B LTR MaLR 128 358 -32 280 200 31 15 chr4 185022303 185022368 -17305979 - MIR SINE MIR -117 145 80 258 290 114 44 chr4 185022899 185023152 -17305195 + L2 LINE L2 2786 3056 -216 806 224 0 0 chr4 185023304 185023456 -17304891 - FRAM SINE Alu -24 152 1 901 238 189 26 chr4 185023486 185023914 -17304433 - MLT1J LTR MaLR -13 498 1 344 299 152 10 chr4 185024058 185024262 -17304085 + MLT1L LTR MaLR 376 608 -7 252 374 20 82 chr4 185024312 185024507 -17303840 + L2 LINE L2 3072 3254 -18 181 322 0 17 chr4 185024459 185024518 -17303829 + MIR SINE MIR 204 261 -1 * 23 33 0 0 chr4 185025065 185025095 -17303252 + AT_rich Low_complexity Low_complexity 1 30 0 1730 180 26 17 chr4 185025196 185025541 -17302806 + MER7A DNA MER2_type 1 346 0 2396 183 94 32 chr4 185028435 185028964 -17299383 - MER68 LTR ERV1 0 562 1 801 142 43 129 chr4 185030156 185030388 -17297959 + MER68 LTR ERV1 22 233 -329 291 242 40 61 chr4 185030881 185030980 -17297367 - L2 LINE L2 -8 3305 3209 2312 84 0 3 chr4 185031146 185031445 -17296902 + AluSq SINE Alu 1 298 -15 275 318 68 15 chr4 185031991 185032315 -17296032 + L1M4 LINE L1 2483 2823 -3323 23 54 0 0 chr4 185032614 185032651 -17295696 + AT_rich Low_complexity Low_complexity 1 37 0 247 258 86 93 chr4 185032870 185033394 -17294953 + L1M4 LINE L1 3729 4248 -1898 329 296 93 0 chr4 185034237 185034345 -17294002 + L2 LINE L2 3175 3292 -21 23 0 0 0 chr4 185034518 185034541 -17293806 + AT_rich Low_complexity Low_complexity 1 23 0 208 118 47 71 chr4 185035732 185035817 -17292530 + (CCGGG)n Simple_repeat Simple_repeat 4 86 0 22 0 0 0 chr4 185036559 185036581 -17291766 + AT_rich Low_complexity Low_complexity 1 22 0 306 315 109 18 chr4 185036698 185036863 -17291484 + MIR SINE MIR 78 257 -5 1727 113 63 51 chr4 185036863 185037198 -17291149 - MER44D DNA MER2_type 0 609 1 21 0 0 0 chr4 185039720 185039741 -17288606 + AT_rich Low_complexity Low_complexity 1 21 0 191 36 36 0 chr4 185039835 185039863 -17288484 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 1028 278 57 27 chr4 185039907 185040314 -17288033 + Charlie7 DNA MER1_type 144 562 -2050 2245 112 6 13 chr4 185040435 185040749 -17287598 - AluSq SINE Alu -1 312 1 1132 143 0 0 chr4 185041137 185041298 -17287049 - AluSq SINE Alu -11 302 142 2276 109 0 3 chr4 185041413 185041715 -17286632 + AluSx SINE Alu 1 301 -11 367 304 42 63 chr4 185044629 185044820 -17283527 - MIR SINE MIR -60 202 16 304 274 14 0 chr4 185045409 185045482 -17282865 + MIR3 SINE MIR 101 174 -34 2304 102 3 9 chr4 185046969 185047284 -17281063 - AluSq SINE Alu 0 313 1 580 138 81 24 chr4 185047518 185047641 -17280706 + L2 LINE L2 3183 3312 -1 297 324 82 35 chr4 185049011 185049078 -17279269 - MLT1J2 LTR MaLR -4 446 384 2094 109 7 20 chr4 185049078 185049372 -17278975 + AluSg SINE Alu 5 294 -16 297 324 82 35 chr4 185049372 185049474 -17278873 - MLT1J2 LTR MaLR -66 384 269 324 70 0 0 chr4 185050035 185050078 -17278269 + (CA)n Simple_repeat Simple_repeat 2 44 0 235 105 0 0 chr4 185050739 185050777 -17277570 - MLT1I LTR MaLR -51 358 321 22 56 0 0 chr4 185051051 185051087 -17277260 + AT_rich Low_complexity Low_complexity 1 36 0 1726 134 7 14 chr4 185051090 185051400 -17276947 + AluSg SINE Alu 1 308 0 929 102 6 54 chr4 185051417 185051583 -17276764 + L1P3 LINE L1 2 159 -5716 1079 107 20 7 chr4 185051586 185051736 -17276611 - AluSq SINE Alu -106 207 56 2912 78 0 15 chr4 185051737 185052137 -17276210 + L1PA8A LINE L1 5736 6129 -2 1632 225 41 73 chr4 185052163 185052697 -17275650 - LTR40a LTR ERVL 0 519 3 1081 240 16 4 chr4 185052700 185052950 -17275397 - HERVL40 LTR ERVL -1 5529 5277 314 268 71 27 chr4 185053388 185053500 -17274847 - HERVL40 LTR ERVL -430 2607 2491 2394 241 64 35 chr4 185053810 185054116 -17274231 - HERVL40 LTR ERVL -768 4539 4244 1917 120 138 38 chr4 185054116 185054507 -17273840 - MSTB1 LTR MaLR 0 432 3 2394 241 64 35 chr4 185054507 185055065 -17273282 - HERVL40 LTR ERVL -1063 4244 2036 618 216 120 39 chr4 185055075 185055407 -17272940 + MLT1A1 LTR MaLR 1 428 0 2153 236 85 41 chr4 185055407 185056112 -17272235 - HERVL40 LTR ERVL -1782 3748 3013 229 214 122 38 chr4 185056119 185056250 -17272097 + L1ME3A LINE L1 5821 5962 -208 275 172 65 11 chr4 185057201 185057294 -17271053 + CT-rich Low_complexity Low_complexity 3 100 0 1451 190 54 10 chr4 185057298 185057593 -17270754 - AluJo SINE Alu 0 312 5 567 208 124 98 chr4 185058684 185058949 -17269398 + ORSL DNA AcHobo 2 273 -2 2273 100 7 7 chr4 185059231 185059531 -17268816 + AluSq SINE Alu 1 300 -13 1716 188 11 7 chr4 185059738 185060139 -17268208 + LTR32 LTR ERVL 15 469 -2 233 287 234 0 chr4 185060710 185060804 -17267543 - L2 LINE L2 -4 3309 3194 794 306 93 37 chr4 185061738 185062166 -17266181 - L2 LINE L2 -5 3308 2857 268 264 11 11 chr4 185062216 185062303 -17266044 + LTR16A LTR ERVL 16 102 -348 635 279 202 3 chr4 185062367 185062654 -17265693 - L2 LINE L2 -521 2793 2450 26 0 0 0 chr4 185063215 185063241 -17265106 + AT_rich Low_complexity Low_complexity 1 26 0 2363 89 129 20 chr4 185063297 185063701 -17264646 - LTR7 LTR ERV1 -2 448 1 7865 83 25 4 chr4 185063701 185064862 -17263485 - HERVH LTR ERV1 0 7713 6529 3765 76 55 2 chr4 185064835 185065416 -17262931 - HERVH LTR ERV1 -1333 6380 5769 * 1091 118 0 48 chr4 185065412 185065599 -17262748 - HERVH LTR ERV1 -3046 4667 4490 * 3197 113 2 4 chr4 185065601 185066098 -17262249 - HERVH LTR ERV1 -3718 3995 3500 861 134 13 0 chr4 185066097 185066246 -17262101 - HERVH LTR ERV1 -4423 3290 3140 * 13313 115 17 23 chr4 185066240 185069056 -17259291 - HERVH LTR ERV1 -4726 2987 1 447 168 0 32 chr4 185069058 185069153 -17259194 - LTR7 LTR ERV1 -2 448 357 2162 119 3 0 chr4 185069757 185070060 -17258287 - AluSc SINE Alu 0 309 6 23 0 0 0 chr4 185070111 185070134 -17258213 + AT_rich Low_complexity Low_complexity 1 23 0 253 193 67 22 chr4 185070952 185071087 -17257260 + (TA)n Simple_repeat Simple_repeat 1 141 0 258 339 54 18 chr4 185071737 185071849 -17256498 + L2 LINE L2 3141 3256 -16 1897 148 129 16 chr4 185072032 185072418 -17255929 + MSTB1 LTR MaLR 1 430 -2 181 306 40 73 chr4 185074194 185074318 -17254029 + L2 LINE L2 2735 2854 -460 253 262 155 39 chr4 185074512 185074615 -17253732 + L2 LINE L2 3180 3294 -19 1315 191 43 29 chr4 185076434 185076712 -17251635 + AluJo SINE Alu 1 282 -30 412 350 63 36 chr4 185078798 185079021 -17249326 - L2 LINE L2 -1 3271 3043 22 0 0 0 chr4 185079617 185079639 -17248708 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 185080785 185080813 -17247534 + AT_rich Low_complexity Low_complexity 1 28 0 228 226 0 15 chr4 185080819 185080888 -17247459 - MIR SINE MIR -65 143 98 561 100 0 0 chr4 185081354 185081434 -17246913 + MADE1 DNA Mariner 1 80 0 1131 139 0 12 chr4 185082034 185082206 -17246141 - AluJb SINE Alu -6 306 137 618 292 30 68 chr4 185083084 185083451 -17244896 + MLT1K LTR MaLR 212 564 -24 414 315 13 0 chr4 185083506 185083650 -17244697 - MIR SINE MIR -71 137 22 2400 82 3 3 chr4 185084002 185084307 -17244040 - AluSx SINE Alu -7 305 1 582 261 103 26 chr4 185085141 185085336 -17243011 + MIR SINE MIR 48 257 -5 326 269 128 7 chr4 185086037 185086190 -17242157 + MIR SINE MIR 6 184 -62 238 265 34 86 chr4 185086373 185086490 -17241857 - L2 LINE L2 -2 3311 3201 225 0 0 0 chr4 185086751 185086776 -17241571 + (T)n Simple_repeat Simple_repeat 1 25 0 815 276 13 29 chr4 185087348 185087587 -17240760 + MIR SINE MIR 23 257 -5 800 249 108 46 chr4 185087735 185088216 -17240131 + L1ME2 LINE L1 5646 6156 -8 27 29 0 0 chr4 185088455 185088489 -17239858 + AT_rich Low_complexity Low_complexity 1 34 0 1249 137 18 50 chr4 185088489 185088766 -17239581 - L1PA8 LINE L1 -10 6162 5895 375 235 78 0 chr4 185089117 185089270 -17239077 - L1ME3A LINE L1 -216 5954 5790 904 184 73 94 chr4 185089472 185089939 -17238408 - Charlie2 DNA MER1_type -119 2743 2287 240 211 113 14 chr4 185090013 185090084 -17238263 - Charlie2 DNA MER1_type -2554 308 231 250 280 19 9 chr4 185090239 185090346 -17238001 - L1ME3A LINE L1 -509 5661 5554 456 252 68 0 chr4 185090356 185090576 -17237771 - L1ME3A LINE L1 -654 5508 5263 246 304 0 14 chr4 185090739 185090808 -17237539 + MIR SINE MIR 32 99 -163 846 246 50 5 chr4 185090859 185091079 -17237268 - MIR SINE MIR -32 230 1 206 217 150 0 chr4 185091079 185091135 -17237212 + MIR SINE MIR 117 181 -81 253 180 49 0 chr4 185091564 185091625 -17236722 - MER92C LTR ERV1 0 554 491 372 218 82 27 chr4 185091743 185091853 -17236494 - MER92C LTR ERV1 -438 116 1 656 237 31 16 chr4 185092396 185092590 -17235757 - L1MD2 LINE L1 -33 6326 6130 22 35 0 0 chr4 185092779 185092808 -17235539 + AT_rich Low_complexity Low_complexity 1 29 0 388 86 0 0 chr4 185093298 185093356 -17234991 - MADE1 DNA Mariner 0 80 23 1013 286 90 10 chr4 185093450 185093838 -17234509 - L2 LINE L2 0 3313 2895 1602 177 13 29 chr4 185094794 185095110 -17233237 - AluJb SINE Alu 0 312 2 21 71 0 0 chr4 185095611 185095653 -17232694 + AT_rich Low_complexity Low_complexity 1 42 0 319 138 52 17 chr4 185095733 185095791 -17232556 + L2 LINE L2 3193 3252 -61 6405 170 65 26 chr4 185095792 185097150 -17231197 - MER52A LTR ERV1 -1 1754 282 3264 112 22 14 chr4 185097150 185097657 -17230690 + MER9 LTR ERVK 1 511 0 39143 85 15 15 chr4 185097657 185098433 -17229914 + HERVK9 LTR ERVK 1 776 -5140 187 218 0 91 chr4 185098433 185098488 -17229859 + MER5B DNA MER1_type 60 109 -69 39143 85 15 15 chr4 185098488 185103293 -17225054 + HERVK9 LTR ERVK 776 5634 -282 2168 54 11 0 chr4 185103389 185103668 -17224679 + HERVK9 LTR ERVK 5635 5916 0 3633 92 10 12 chr4 185103668 185104180 -17224167 + MER9 LTR ERVK 1 511 0 852 189 0 71 chr4 185104180 185104392 -17223955 - MER52A LTR ERV1 -1558 197 1 1638 137 159 73 chr4 185104531 185104903 -17223444 - MER4A LTR ERV1 0 664 261 593 141 0 10 chr4 185104903 185105002 -17223345 - MER4A LTR ERV1 -566 98 1 14647 110 46 41 chr4 185105006 185107771 -17220576 - MER4A-int LTR ERV1 -2 6596 3817 8272 111 144 119 chr4 185107771 185108034 -17220313 - MER4A-int LTR ERV1 -2922 3676 3421 2098 152 0 0 chr4 185108034 185108337 -17220010 + AluSx SINE Alu 1 303 -9 8272 111 144 119 chr4 185108337 185110702 -17217645 - MER4A-int LTR ERV1 -3177 3421 983 2950 129 65 17 chr4 185110704 185111225 -17217122 - MER41A LTR ERV1 -8 546 1 3982 133 114 67 chr4 185111226 185112173 -17216174 - MER4A-int LTR ERV1 -5606 992 1 1594 111 13 97 chr4 185112176 185112553 -17215794 - MER4A LTR ERV1 0 664 261 614 133 0 10 chr4 185112554 185112652 -17215695 - MER4A LTR ERV1 -567 97 1 339 307 84 79 chr4 185112828 185113209 -17215138 - L1MEd LINE L1 -5180 939 557 478 291 146 5 chr4 185113392 185113605 -17214742 + ERVL LTR ERVL 5161 5403 -361 236 292 22 45 chr4 185113989 185114078 -17214269 + LTR67 LTR ERVL 114 200 -357 24 91 0 0 chr4 185114785 185114851 -17213496 + AT_rich Low_complexity Low_complexity 1 66 0 325 319 44 24 chr4 185115036 185115095 -17213252 - L1ME LINE L1 -449 5672 5616 2293 112 0 6 chr4 185115095 185115409 -17212938 - AluSx SINE Alu 0 312 1 325 319 44 24 chr4 185115409 185115687 -17212660 - L1ME LINE L1 -505 5616 5328 2411 66 0 31 chr4 185115715 185116033 -17212314 - AluY SINE Alu -3 308 1 12303 200 37 9 chr4 185116052 185122824 -17205523 - L1PA16 LINE L1 -20 6849 1 265 354 71 0 chr4 185122920 185123047 -17205300 + MIR SINE MIR 117 252 -10 197 240 20 0 chr4 185123493 185123543 -17204804 - MIR SINE MIR -111 151 101 378 343 82 5 chr4 185123546 185123753 -17204594 + Charlie7 DNA MER1_type 153 375 -2237 398 319 19 13 chr4 185123764 185123921 -17204426 - MLT1I LTR MaLR -8 401 244 264 303 206 19 chr4 185124607 185124762 -17203585 - MIR SINE MIR -59 203 20 226 100 57 14 chr4 185124817 185124887 -17203460 + (TA)n Simple_repeat Simple_repeat 1 73 0 3814 210 30 8 chr4 185124887 185125768 -17202579 - L1 LINE L1 -3005 3141 2242 9100 186 23 27 chr4 185125770 185126366 -17201981 + L1PB4 LINE L1 3227 3824 -2332 2047 137 0 3 chr4 185126366 185126659 -17201688 - AluSg SINE Alu -18 292 1 9100 186 23 27 chr4 185126659 185128965 -17199382 + L1PB4 LINE L1 3824 6142 -14 410 127 0 0 chr4 185128966 185129037 -17199310 + Tigger3(Golem) DNA MER2_type 211 281 -2748 210 82 82 0 chr4 185129114 185129163 -17199184 + (TA)n Simple_repeat Simple_repeat 2 54 0 319 182 15 0 chr4 185129163 185129229 -17199118 + L1 LINE L1 3706 3772 -2374 252 0 0 0 chr4 185129312 185129340 -17199007 + (TA)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr4 185129391 185129413 -17198934 + AT_rich Low_complexity Low_complexity 1 22 0 330 222 0 0 chr4 185130271 185130334 -17198013 - MIR3 SINE MIR -27 181 119 516 298 39 33 chr4 185130588 185130769 -17197578 + MIR SINE MIR 15 196 -66 27 29 0 0 chr4 185131489 185131523 -17196824 + AT_rich Low_complexity Low_complexity 1 34 0 2298 103 0 0 chr4 185132806 185133107 -17195240 + AluSx SINE Alu 5 305 -7 2139 201 87 57 chr4 185133916 185134584 -17193763 - MER76 LTR ERV 0 688 1 1331 124 60 0 chr4 185134909 185135126 -17193221 - MER30 DNA MER1_type 0 230 1 226 341 81 19 chr4 185135492 185135703 -17192644 - MIR SINE MIR -16 246 23 222 37 0 0 chr4 185137115 185137142 -17191205 + (TTTCC)n Simple_repeat Simple_repeat 4 30 0 1716 284 77 56 chr4 185137868 185138205 -17190142 - MER115 DNA AcHobo 0 693 365 2031 128 7 0 chr4 185138205 185138525 -17189822 - AluSp SINE Alu 0 322 1 1716 284 77 56 chr4 185138525 185138833 -17189514 - MER115 DNA AcHobo -328 365 33 260 343 9 19 chr4 185139153 185139258 -17189089 - L2 LINE L2 -10 3262 3159 270 322 144 8 chr4 185139356 185139474 -17188873 + MIR SINE MIR 2 135 -127 512 293 44 39 chr4 185139514 185139719 -17188628 - MIR SINE MIR -54 208 3 357 93 0 0 chr4 185140524 185140578 -17187769 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 2294 25 33 0 chr4 185140582 185140857 -17187490 - L1PA2 LINE L1 -26 6129 5846 3416 148 11 0 chr4 185141783 185142303 -17186044 + MER1A DNA MER1_type 2 527 0 2038 103 14 3 chr4 185143060 185143351 -17184996 - AluSg SINE Alu -16 294 1 2227 111 3 3 chr4 185143542 185143848 -17184499 + AluSx SINE Alu 1 306 -6 324 315 138 10 chr4 185144207 185144410 -17183937 - MIR SINE MIR -27 235 7 195 162 0 0 chr4 185144834 185144871 -17183476 - L2 LINE L2 0 3313 3277 466 340 12 40 chr4 185145019 185145266 -17183081 - L2 LINE L2 -223 3090 2851 312 292 58 36 chr4 185145284 185145421 -17182926 - MER5B DNA MER1_type -2 176 37 733 42 34 17 chr4 185145771 185145889 -17182458 + AluY SINE Alu 190 309 -2 366 318 48 39 chr4 185145930 185146164 -17182183 - L1MC/D LINE L1 -482 5875 5650 292 282 98 0 chr4 185146178 185146352 -17181995 - L1MC/D LINE L1 -782 5600 5410 422 288 139 53 chr4 185147704 185148079 -17180268 + L1M4 LINE L1 3077 3483 -2663 2288 87 0 0 chr4 185148410 185148696 -17179651 - AluSg1 SINE Alu -22 287 2 763 269 32 21 chr4 185148861 185149120 -17179227 - L1MC/D LINE L1 -4521 2042 1628 568 325 30 23 chr4 185149126 185149391 -17178956 - L1MC/D LINE L1 -6099 464 198 579 306 78 16 chr4 185149482 185149737 -17178610 + L2 LINE L2 627 897 -2417 452 75 0 50 chr4 185149737 185149817 -17178530 - AluSp/q SINE Alu 0 313 238 1028 66 0 0 chr4 185149821 185149943 -17178404 - AluSp SINE Alu -191 122 1 350 315 158 5 chr4 185149944 185150147 -17178200 + L2 LINE L2 896 1129 -2185 965 286 92 42 chr4 185150179 185150363 -17177984 + L2 LINE L2 2837 3010 -303 1961 91 4 0 chr4 185150363 185150615 -17177732 - AluSc SINE Alu -12 297 45 965 286 92 42 chr4 185150615 185150884 -17177463 + L2 LINE L2 3010 3313 0 * 1392 338 90 23 chr4 185150880 185151805 -17176542 + L2 LINE L2 1176 2162 -1152 631 248 118 25 chr4 185151805 185152119 -17176228 - L1ME LINE L1 -445 5725 5383 2090 107 13 20 chr4 185152120 185152418 -17175929 - AluSx SINE Alu -16 296 1 14109 120 56 10 chr4 185152575 185154887 -17173460 + Tigger1 DNA MER2_type 1 2418 0 628 214 124 22 chr4 185155014 185155192 -17173155 - MER58A DNA MER1_type 0 224 29 326 324 27 34 chr4 185155206 185155354 -17172993 - L3 LINE CR1 -1095 482 336 234 241 0 25 chr4 185155736 185155815 -17172532 - L1MC4 LINE L1 -89 7953 7877 24 53 0 0 chr4 185155921 185155959 -17172388 + AT_rich Low_complexity Low_complexity 1 38 0 1713 151 33 67 chr4 185155959 185156162 -17172185 - L1MB4 LINE L1 0 6180 5995 1901 138 81 0 chr4 185156162 185156496 -17171851 + MER46B DNA MER2_type 1 236 0 1713 151 33 67 chr4 185156496 185156683 -17171664 - L1MB4 LINE L1 -185 5995 5803 515 168 0 56 chr4 185156752 185156877 -17171470 - L1M4c LINE L1 -5259 1387 1270 392 135 8 38 chr4 185156877 185156956 -17171391 - FLAM SINE Alu -7 126 67 1360 269 15 12 chr4 185156970 185157382 -17170965 - L1M4c LINE L1 -5302 1240 828 411 319 67 47 chr4 185157523 185157821 -17170526 - L1M4c LINE L1 -6049 597 294 408 288 148 3 chr4 185157834 185158127 -17170220 - L1MC5 LINE L1 -547 7495 7192 261 0 0 0 chr4 185159197 185159226 -17169121 + (TG)n Simple_repeat Simple_repeat 2 30 0 2800 282 196 33 chr4 185160152 185161838 -17166509 + L2 LINE L2 721 2681 -633 1553 226 86 67 chr4 185163174 185163696 -17164651 + MER34 LTR ERV1 11 542 0 189 211 19 58 chr4 185163737 185163789 -17164558 + MIR SINE MIR 107 156 -106 250 255 122 96 chr4 185164101 185164289 -17164058 + L2 LINE L2 1215 1407 -1907 978 199 48 77 chr4 185164481 185164818 -17163529 + MLT1A1 LTR MaLR 39 365 0 2238 54 32 51 chr4 185164842 185165155 -17163192 - AluY SINE Alu -4 307 1 265 299 15 60 chr4 185165462 185165596 -17162751 - HAL1 LINE L1 -31 2476 2349 1620 290 80 25 chr4 185165839 185166525 -17161822 + L2 LINE L2 2289 3016 -297 365 214 40 156 chr4 185166623 185166847 -17161500 - MLT1H LTR MaLR -108 441 244 327 286 24 16 chr4 185167032 185167158 -17161189 - MLT1H LTR MaLR -420 129 3 255 239 33 22 chr4 185167160 185167252 -17161095 + L2 LINE L2 3029 3121 -192 927 204 60 83 chr4 185167276 185167673 -17160674 - MLT2C1 LTR ERVL 0 397 10 277 248 99 33 chr4 185167674 185167795 -17160552 + L2 LINE L2 3147 3275 -38 767 266 90 73 chr4 185167834 185168447 -17159900 - HAL1 LINE L1 -169 2338 1716 338 313 66 0 chr4 185169077 185169243 -17159104 - HAL1b LINE L1 -477 871 695 2109 121 4 0 chr4 185169259 185169562 -17158785 - AluSx SINE Alu 0 306 3 321 262 143 0 chr4 185169817 185169985 -17158362 - L1ME3A LINE L1 -209 5961 5770 463 335 29 0 chr4 185170057 185170296 -17158051 - HAL1b LINE L1 -843 505 260 2219 92 0 0 chr4 185170512 185170796 -17157551 - AluSg1 SINE Alu -14 295 12 2156 121 3 7 chr4 185171802 185172108 -17156239 - AluSx SINE Alu -5 307 3 2234 243 28 3 chr4 185173526 185174098 -17154249 - L1 LINE L1 -799 5347 4762 1003 195 84 18 chr4 185174098 185174324 -17154023 + L1MA9 LINE L1 5546 5786 -526 312 250 0 33 chr4 185174311 185174403 -17153944 + L1MA9 LINE L1 6170 6258 -54 * 556 244 21 31 chr4 185174656 185174849 -17153498 + L1MB8 LINE L1 1347 1537 -5005 * 2788 228 28 29 chr4 185174838 185176176 -17152171 + L1MB8 LINE L1 5150 6488 -188 195 42 0 0 chr4 185176758 185176782 -17151565 + (TG)n Simple_repeat Simple_repeat 1 24 0 1251 266 75 30 chr4 185177138 185177631 -17150716 + MLT1H LTR MaLR 35 549 0 2818 26 0 0 chr4 185178859 185179329 -17149018 - L1PA3 LINE L1 -562 5593 5124 4827 18 0 0 chr4 185179329 185179882 -17148465 + L1PA3 LINE L1 5599 6153 -2 339 333 20 0 chr4 185180346 185180448 -17147899 + MER5A DNA MER1_type 9 112 -77 242 289 175 0 chr4 185180607 185180704 -17147643 + MIR SINE MIR 31 144 -64 1975 104 83 3 chr4 185181262 185181550 -17146797 - AluSx SINE Alu -1 311 1 234 411 75 0 chr4 185182350 185182457 -17145890 - L2 LINE L2 -9 3263 3149 231 326 43 0 chr4 185182664 185182756 -17145591 - L2 LINE L2 -33 3280 3185 557 285 95 34 chr4 185183418 185183710 -17144637 - L1MDa LINE L1 -4264 2276 2037 1611 172 72 26 chr4 185183710 185184059 -17144288 + MLT1A1 LTR MaLR 1 365 0 557 285 95 34 chr4 185184059 185184174 -17144173 - L1MDa LINE L1 -4503 2037 1930 260 250 157 52 chr4 185184391 185184563 -17143784 + MLT1J LTR MaLR 238 427 -84 263 358 67 45 chr4 185185527 185185795 -17142552 + L2 LINE L2 2366 2639 -675 217 319 83 0 chr4 185186247 185186319 -17142028 + L2 LINE L2 3152 3229 -43 263 146 18 0 chr4 185186416 185186471 -17141876 + (TG)n Simple_repeat Simple_repeat 1 56 0 951 150 0 0 chr4 185188247 185188420 -17139927 + CT-rich Low_complexity Low_complexity 1 173 0 291 203 0 58 chr4 185188486 185188555 -17139792 - L2 LINE L2 0 3313 3249 189 263 113 25 chr4 185189611 185189691 -17138656 + MIR SINE MIR 28 114 -148 264 324 37 7 chr4 185192546 185192682 -17135665 - MARNA DNA Mariner -203 383 244 411 357 38 6 chr4 185194228 185194385 -17133962 - L2 LINE L2 -4 3268 3107 394 278 110 46 chr4 185194643 185194816 -17133531 + MIR SINE MIR 78 261 -1 521 323 208 11 chr4 185194890 185195365 -17132982 - L2 LINE L2 0 3313 2746 218 313 83 0 chr4 185196055 185196151 -17132196 + MIR SINE MIR 86 189 -73 22 56 0 0 chr4 185198942 185198978 -17129369 + AT_rich Low_complexity Low_complexity 1 36 0 213 356 55 0 chr4 185199221 185199294 -17129053 + L2 LINE L2 3160 3236 -36 1105 156 21 16 chr4 185199601 185199793 -17128554 + MLT1A1 LTR MaLR 1 193 -172 701 145 8 38 chr4 185199885 185200016 -17128331 + AluJb SINE Alu 2 128 -184 742 200 0 0 chr4 185200022 185200157 -17128190 + MLT1A1 LTR MaLR 231 365 0 544 340 76 45 chr4 185200255 185200831 -17127516 - L1 LINE L1 -1863 4283 3690 635 259 35 0 chr4 185201212 185201382 -17126965 + MIR SINE MIR 67 242 -20 22 0 0 0 chr4 185202227 185202249 -17126098 + AT_rich Low_complexity Low_complexity 1 22 0 1533 174 11 8 chr4 185202297 185202562 -17125785 + AluJb SINE Alu 5 270 -42 189 0 0 0 chr4 185202583 185202604 -17125743 + (GAAAA)n Simple_repeat Simple_repeat 3 23 0 22 56 0 0 chr4 185203685 185203721 -17124626 + AT_rich Low_complexity Low_complexity 1 36 0 2157 114 0 0 chr4 185206248 185206545 -17121802 + AluSx SINE Alu 1 297 -15 3455 263 51 23 chr4 185206615 185207661 -17120686 + L1MC/D LINE L1 3 1077 -4968 10773 207 50 10 chr4 185207703 185211170 -17117177 + L1PB4 LINE L1 2551 6155 -1 1914 247 101 23 chr4 185211165 185212781 -17115566 + L1MC/D LINE L1 1163 2992 -3572 * 4402 241 61 13 chr4 185212824 185214167 -17114180 + L1MC/D LINE L1 4054 5461 -1103 * 5083 172 20 24 chr4 185214147 185215672 -17112675 + L1PA16 LINE L1 4250 5764 -402 2475 58 3 6 chr4 185215672 185215984 -17112363 + AluY SINE Alu 1 311 0 5083 172 20 24 chr4 185215984 185216383 -17111964 + L1PA16 LINE L1 5764 6163 -3 1355 171 40 7 chr4 185216364 185216765 -17111582 + L1MC/D LINE L1 5447 5860 -745 * 2618 30 0 0 chr4 185216765 185217067 -17111280 - AluY SINE Alu -9 302 1 359 271 0 28 chr4 185217169 185217276 -17111071 + MLT1F1 LTR MaLR 21 124 -443 1579 163 52 79 chr4 185217296 185217700 -17110647 + L1MC3 LINE L1 7221 7613 -172 1748 154 21 11 chr4 185217809 185218095 -17110252 - MER1B DNA MER1_type 0 339 51 187 360 50 20 chr4 185218218 185218318 -17110029 - L2 LINE L2 -18 3295 3193 830 327 137 30 chr4 185218429 185219307 -17109040 + L2 LINE L2 1670 2641 -673 45 75 0 0 chr4 185219540 185219634 -17108713 + AT_rich Low_complexity Low_complexity 1 94 0 21 0 0 0 chr4 185219684 185219705 -17108642 + AT_rich Low_complexity Low_complexity 1 21 0 323 301 12 0 chr4 185219772 185219855 -17108492 - MIR SINE MIR -160 102 19 892 208 61 54 chr4 185220136 185220415 -17107932 + L1MA9 LINE L1 6032 6312 0 7183 55 0 1 chr4 185221639 185222854 -17105493 + L1PA5 LINE L1 4939 6153 -1 21 0 0 0 chr4 185223693 185223714 -17104633 + AT_rich Low_complexity Low_complexity 1 21 0 2405 54 7 0 chr4 185223725 185224020 -17104327 + AluY SINE Alu 1 297 -14 237 294 15 0 chr4 185224022 185224090 -17104257 - Charlie8 DNA MER1_type -989 1428 1360 * 596 240 67 63 chr4 185224089 185224452 -17103895 - Charlie8 DNA MER1_type -2158 259 5 27 29 0 0 chr4 185224671 185224705 -17103642 + AT_rich Low_complexity Low_complexity 1 34 0 394 242 71 102 chr4 185225002 185225324 -17103023 - L1ME LINE L1 -366 5796 5485 420 296 98 32 chr4 185225331 185225671 -17102676 - L1ME LINE L1 -750 5396 4954 3189 95 9 5 chr4 185225671 185226113 -17102234 - MLT2A1 LTR ERVL 0 444 1 420 296 98 32 chr4 185226113 185226238 -17102109 - L1ME LINE L1 -1192 4954 4839 2733 10 7 0 chr4 185227237 185227537 -17100810 - AluYa5 SINE Alu -9 302 1 6107 189 43 36 chr4 185227644 185228058 -17100289 + L1MA9 LINE L1 3883 4292 -1854 2089 122 0 3 chr4 185228058 185228344 -17100003 - AluSc SINE Alu -12 297 13 6107 189 43 36 chr4 185228344 185229431 -17098916 + L1MA9 LINE L1 4292 5395 -751 4872 118 49 8 chr4 185229433 185230434 -17097913 - LTR12 LTR ERV1 0 2424 57 4286 158 37 78 chr4 185230438 185231243 -17097104 + L1MA9 LINE L1 5394 6156 -156 330 45 0 0 chr4 185231243 185231287 -17097060 + (CA)n Simple_repeat Simple_repeat 1 44 0 4286 158 37 78 chr4 185231287 185231434 -17096913 + L1MA9 LINE L1 6156 6307 -5 936 178 0 0 chr4 185233127 185233307 -17095040 + GA-rich Low_complexity Low_complexity 1 180 0 542 273 18 0 chr4 185233472 185233582 -17094765 - MER81 DNA DNA -1 113 2 398 282 58 53 chr4 185234136 185234324 -17094023 + MER5A DNA MER1_type 1 189 0 1976 267 71 9 chr4 185234481 185235143 -17093204 - L1MEc LINE L1 -5662 734 32 2423 87 0 0 chr4 185235489 185235789 -17092558 + AluSc SINE Alu 1 300 -9 1076 245 80 20 chr4 185235954 185236256 -17092091 - LTR52 LTR ERVL -2 419 100 30 27 0 0 chr4 185236271 185236308 -17092039 + AT_rich Low_complexity Low_complexity 1 37 0 405 185 134 42 chr4 185236371 185236490 -17091857 + L1MA7 LINE L1 6160 6289 -2 291 173 0 0 chr4 185236500 185236552 -17091795 - LTR52 LTR ERVL -369 52 1 398 275 27 7 chr4 185236844 185236993 -17091354 - L1M4 LINE L1 -2155 3991 3840 22 56 0 0 chr4 185237008 185237044 -17091303 + AT_rich Low_complexity Low_complexity 1 36 0 438 250 52 0 chr4 185237621 185237757 -17090590 + LTR67 LTR ERVL 408 550 -7 190 304 64 72 chr4 185238887 185239012 -17089335 + L2 LINE L2 2404 2527 -787 207 69 0 0 chr4 185240052 185240081 -17088266 + (TGG)n Simple_repeat Simple_repeat 3 31 0 895 246 6 11 chr4 185241218 185241393 -17086954 - MER5A DNA MER1_type -15 174 1 358 253 0 0 chr4 185241589 185241664 -17086683 - L2 LINE L2 -5 3308 3234 293 302 86 50 chr4 185242879 185243101 -17085246 - L1MC/D LINE L1 -2227 5581 5352 793 222 42 0 chr4 185243161 185243373 -17084974 + L1MB7 LINE L1 2638 2858 -3288 2257 108 3 13 chr4 185243382 185243697 -17084650 + AluSx SINE Alu 1 312 0 325 216 58 101 chr4 185243702 185243910 -17084437 + L1MB7 LINE L1 3075 3273 -2873 * 3936 193 40 49 chr4 185243902 185244117 -17084230 + L1MB7 LINE L1 4212 4428 -1756 1798 168 32 0 chr4 185244117 185244402 -17083945 + AluSx SINE Alu 3 296 -16 3936 193 40 49 chr4 185244402 185245572 -17082775 + L1MB7 LINE L1 4428 5577 -607 318 218 0 0 chr4 185245572 185245627 -17082720 + Tigger5 DNA MER2_type 1 55 -2268 289 288 0 0 chr4 185245596 185245669 -17082678 + Tigger5 DNA MER2_type 2251 2323 0 * 2717 165 45 28 chr4 185245670 185246084 -17082263 + L1MB7 LINE L1 5577 6005 -179 1603 229 65 41 chr4 185246084 185246577 -17081770 - MLT1D LTR MaLR 0 505 1 2717 165 45 28 chr4 185246577 185246743 -17081604 + L1MB7 LINE L1 6005 6167 -17 247 288 17 0 chr4 185246840 185246899 -17081448 + MER91B DNA MER1_type 4 63 -127 22 35 0 0 chr4 185247237 185247266 -17081081 + AT_rich Low_complexity Low_complexity 1 29 0 192 152 0 0 chr4 185247587 185247620 -17080727 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 331 310 76 16 chr4 185248274 185248458 -17079889 - MIR SINE MIR -55 207 13 675 284 54 48 chr4 185249094 185249425 -17078922 + MER97a DNA MER1_type? 114 446 -448 1185 174 28 0 chr4 185250518 185250730 -17077617 + AluJb SINE Alu 95 312 0 1984 169 63 0 chr4 185251085 185251464 -17076883 + MER57A LTR ERV1 1 403 0 252 171 0 0 chr4 185251818 185251859 -17076488 + L1M3 LINE L1 5514 5554 -614 30 0 0 0 chr4 185252126 185252156 -17076191 + AT_rich Low_complexity Low_complexity 1 30 0 563 200 17 0 chr4 185252159 185252279 -17076068 - L1MA10 LINE L1 -12 6322 6201 * 7369 68 11 0 chr4 185252271 185254027 -17074320 + L1PA7 LINE L1 4386 6153 -1 24 32 0 0 chr4 185254040 185254071 -17074276 + AT_rich Low_complexity Low_complexity 1 31 0 218 296 263 4 chr4 185255438 185255681 -17072666 - L2 LINE L2 0 3313 3008 709 238 24 0 chr4 185255833 185255997 -17072350 + MIR SINE MIR 17 184 -78 22 88 0 0 chr4 185256056 185256113 -17072234 + AT_rich Low_complexity Low_complexity 1 57 0 231 167 0 0 chr4 185256945 185256987 -17071360 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 1975 110 0 0 chr4 185257007 185257270 -17071077 - AluSq SINE Alu -50 263 1 201 158 0 26 chr4 185257292 185257330 -17071017 + MER5B DNA MER1_type 81 117 -61 181 414 23 23 chr4 185257330 185257411 -17070936 + L2 LINE L2 3144 3264 -8 1431 318 238 15 chr4 185260466 185261472 -17066875 + L2 LINE L2 778 2007 -1307 21 0 0 0 chr4 185261573 185261594 -17066753 + AT_rich Low_complexity Low_complexity 1 21 0 456 279 189 21 chr4 185261844 185262124 -17066223 - L1MDa LINE L1 -4500 1629 1303 24 32 0 0 chr4 185262165 185262196 -17066151 + AT_rich Low_complexity Low_complexity 1 31 0 478 268 58 34 chr4 185262283 185262574 -17065773 - L1MDa LINE L1 -4902 1217 920 1274 271 118 45 chr4 185263348 185263401 -17064946 + L2 LINE L2 1995 2043 -1271 1943 61 0 0 chr4 185263401 185263648 -17064699 - L1PA5 LINE L1 -2 6152 5906 1274 271 118 45 chr4 185263648 185264255 -17064092 + L2 LINE L2 2043 2703 -611 1048 90 0 28 chr4 185264326 185264495 -17063852 - AluSp SINE Alu 0 308 144 262 188 21 0 chr4 185264495 185264543 -17063804 + MER20 DNA MER1_type 163 211 -8 235 357 43 21 chr4 185266125 185266265 -17062082 - L2 LINE L2 -1 3271 3129 1135 200 0 29 chr4 185266279 185266489 -17061858 + MER58A DNA MER1_type 4 207 -17 253 302 114 34 chr4 185266582 185266731 -17061616 - MIR SINE MIR -85 177 17 326 315 120 27 chr4 185266963 185267255 -17061092 + MLT1H LTR MaLR 1 319 -230 306 250 24 0 chr4 185267858 185267942 -17060405 - MIR SINE MIR -73 189 104 688 306 11 0 chr4 185267987 185268167 -17060180 - MIR SINE MIR -75 187 6 210 91 0 0 chr4 185268287 185268320 -17060027 + (TA)n Simple_repeat Simple_repeat 1 33 0 389 295 55 22 chr4 185268379 185268562 -17059785 + L1MEc LINE L1 762 950 -6172 424 261 29 6 chr4 185268631 185268795 -17059552 + L1MEc LINE L1 1284 1665 -4973 2618 234 68 60 chr4 185268832 185269307 -17059040 - MER21B LTR ERV1 -45 818 333 2483 40 20 3 chr4 185269307 185269608 -17058739 - AluY SINE Alu -5 306 1 2618 234 68 60 chr4 185269608 185269930 -17058417 - MER21B LTR ERV1 -530 333 15 1824 253 120 38 chr4 185269965 185270249 -17058098 + L1MEc LINE L1 1679 1938 -5184 2049 147 0 3 chr4 185270249 185270562 -17057785 + AluSx SINE Alu 1 312 0 1824 253 120 38 chr4 185270562 185271517 -17056830 + L1MEc LINE L1 1938 3020 -4102 331 183 17 0 chr4 185272032 185272092 -17056255 + MER58A DNA MER1_type 164 224 0 321 26 0 0 chr4 185272338 185272376 -17055971 + (TC)n Simple_repeat Simple_repeat 2 39 0 808 147 0 39 chr4 185272376 185272505 -17055842 - AluSg/x SINE Alu -30 282 159 1623 150 4 0 chr4 185272505 185272745 -17055602 - AluSx SINE Alu -71 241 1 2629 234 134 9 chr4 185272790 185273747 -17054600 + L1MEc LINE L1 2978 4070 -2871 306 0 0 0 chr4 185273747 185273781 -17054566 + (CA)n Simple_repeat Simple_repeat 1 34 0 2629 234 134 9 chr4 185273781 185273834 -17054513 + L1MEc LINE L1 4070 4115 -2826 783 231 106 24 chr4 185273842 185274277 -17054070 + MLT1F1 LTR MaLR 16 559 -8 763 267 70 23 chr4 185274291 185274688 -17053659 + L1MEc LINE L1 4127 4542 -2399 546 192 48 0 chr4 185276226 185276330 -17052017 + FLAM_A SINE Alu 1 109 -33 216 0 0 0 chr4 185276335 185276359 -17051988 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr4 185277236 185277257 -17051090 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 1596 173 28 11 chr4 185277413 185277696 -17050651 + AluJo SINE Alu 10 297 -15 1476 233 103 43 chr4 185278109 185278595 -17049752 + LTR40a LTR ERVL 1 515 -4 3855 198 42 19 chr4 185278702 185279923 -17048424 + L1MB7 LINE L1 4915 6173 -11 21 0 0 0 chr4 185280349 185280370 -17047977 + AT_rich Low_complexity Low_complexity 1 21 0 765 282 57 16 chr4 185281562 185281810 -17046537 - MIR SINE MIR -3 259 2 769 276 114 38 chr4 185282685 185283134 -17045213 + L1MC4a LINE L1 5673 6155 -1653 24 32 0 0 chr4 185284703 185284734 -17043613 + AT_rich Low_complexity Low_complexity 1 31 0 697 295 59 0 chr4 185285404 185285641 -17042706 + MIR SINE MIR 2 252 -10 273 293 49 12 chr4 185286108 185286190 -17042157 + LTR16C LTR ERVL 165 249 -242 21 36 0 0 chr4 185286220 185286248 -17042099 + AT_rich Low_complexity Low_complexity 1 28 0 3149 167 118 21 chr4 185286252 185286958 -17041389 - L1MA6 LINE L1 -17 6283 5510 457 256 141 11 chr4 185286960 185287151 -17041196 + LTR16C LTR ERVL 276 491 0 212 289 163 67 chr4 185288349 185288484 -17039863 - L2 LINE L2 -2 3311 3164 22 0 0 0 chr4 185288530 185288552 -17039795 + AT_rich Low_complexity Low_complexity 1 22 0 632 302 66 60 chr4 185290060 185290527 -17037820 + ERVL LTR ERVL 1323 1792 -3972 21 0 0 0 chr4 185290607 185290628 -17037719 + AT_rich Low_complexity Low_complexity 1 21 0 906 228 40 0 chr4 185291328 185291530 -17036817 - MER82 DNA MER2_type 0 653 444 231 323 108 30 chr4 185291566 185291733 -17036614 + MIR SINE MIR 9 188 -74 307 235 25 12 chr4 185291886 185291967 -17036380 + MIR SINE MIR 120 201 -61 599 298 53 32 chr4 185291974 185292256 -17036091 + ERVL LTR ERVL 2413 2700 -3064 270 282 128 39 chr4 185292655 185292684 -17035663 + MIR SINE MIR 74 99 -163 186 43 0 0 chr4 185292684 185292707 -17035640 + (TTCCC)n Simple_repeat Simple_repeat 4 26 0 1952 147 0 24 chr4 185292707 185293000 -17035347 - AluJo SINE Alu -26 286 1 270 282 128 39 chr4 185293000 185293125 -17035222 + MIR SINE MIR 98 243 -19 383 345 48 20 chr4 185293173 185293425 -17034922 - HERV16 LTR ERVL -786 4868 4610 594 312 16 17 chr4 185293485 185293814 -17034533 - HERV16 LTR ERVL -1964 3032 2656 324 300 44 39 chr4 185293853 185294033 -17034314 - HERV16 LTR ERVL -3090 2674 2494 548 195 124 0 chr4 185294159 185294272 -17034075 - FLAM_C SINE Alu -6 127 1 524 205 17 17 chr4 185294565 185294682 -17033665 + L1MC1 LINE L1 6217 6333 0 594 358 42 7 chr4 185294685 185294970 -17033377 - HERV16 LTR ERVL -4384 612 318 350 364 17 23 chr4 185295076 185295249 -17033098 - HERV16 LTR ERVL -4818 178 7 397 365 29 5 chr4 185295311 185295519 -17032828 - LTR16A LTR ERVL -90 360 148 180 0 0 0 chr4 185295939 185295959 -17032388 + (A)n Simple_repeat Simple_repeat 1 20 0 348 127 0 0 chr4 185296767 185296822 -17031525 + (T)n Simple_repeat Simple_repeat 1 55 0 2328 92 3 3 chr4 185297235 185297538 -17030809 + AluSg SINE Alu 1 303 -7 210 278 28 14 chr4 185297819 185297891 -17030456 - L2 LINE L2 -4 3268 3196 402 332 146 20 chr4 185298925 185299172 -17029175 - MIR SINE MIR -1 261 2 270 81 0 0 chr4 185299202 185299239 -17029108 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 1220 274 66 49 chr4 185302430 185302959 -17025388 - MLT1F LTR MaLR -2 540 3 524 282 50 30 chr4 185305517 185305719 -17022628 + MIR SINE MIR 31 236 -26 22 0 0 0 chr4 185307347 185307369 -17020978 + AT_rich Low_complexity Low_complexity 1 22 0 225 276 97 7 chr4 185307498 185307643 -17020704 - L1ME LINE L1 -226 5895 5738 302 320 49 16 chr4 185307826 185307948 -17020399 + MLT1K LTR MaLR 148 273 -315 717 292 18 18 chr4 185308189 185308408 -17019939 + L1MB1 LINE L1 767 985 -5668 301 252 28 49 chr4 185308422 185308565 -17019782 + L1MB1 LINE L1 1561 1700 -4953 7282 177 33 26 chr4 185308587 185311050 -17017297 + L1MB1 LINE L1 4274 6754 0 2382 29 7 0 chr4 185311153 185311452 -17016895 - AluY SINE Alu 0 301 1 336 340 0 0 chr4 185312068 185312165 -17016182 + L2 LINE L2 3168 3264 -8 195 306 125 0 chr4 185312302 185312374 -17015973 - MIR3 SINE MIR -13 195 115 284 273 86 41 chr4 185313590 185313905 -17014442 + L1MEc LINE L1 54 382 -6014 714 295 41 28 chr4 185314345 185314854 -17013493 + L1MEc LINE L1 668 1183 -5022 22 0 0 0 chr4 185315089 185315111 -17013236 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr4 185315866 185315904 -17012443 + AT_rich Low_complexity Low_complexity 1 38 0 1452 95 0 18 chr4 185317527 185317749 -17010598 - L1PA8 LINE L1 -2 6170 5953 382 235 101 27 chr4 185318966 185319115 -17009232 - MER5A DNA MER1_type -26 163 4 236 253 32 95 chr4 185320271 185320366 -17007981 + L3b LINE CR1 1415 1503 -80 2380 84 0 7 chr4 185320996 185321304 -17007043 - AluSc SINE Alu -3 306 1 600 313 100 4 chr4 185321568 185321808 -17006539 + LTR33 LTR ERVL 1 263 -258 2166 125 7 0 chr4 185322517 185322821 -17005526 - AluSx SINE Alu -6 306 1 276 302 47 0 chr4 185322904 185323010 -17005337 + MIR SINE MIR 98 208 -54 196 318 12 12 chr4 185323059 185323144 -17005203 - MIR SINE MIR -108 100 16 1440 209 138 15 chr4 185323914 185324311 -17004036 - MER39 LTR ERV1 0 707 262 396 266 79 29 chr4 185324285 185324424 -17003923 - MER39 LTR ERV1 -551 156 11 * 312 327 119 22 chr4 185326859 185327137 -17001210 + MLT1J LTR MaLR 28 332 -179 2333 107 3 0 chr4 185327201 185327533 -17000814 - AluSx SINE Alu 0 333 1 2734 185 61 30 chr4 185327587 185328214 -17000133 - L1MB8 LINE L1 -2 6176 5531 295 304 120 38 chr4 185329654 185329812 -16998535 - LTR67 LTR ERVL -40 517 347 260 336 9 35 chr4 185329902 185330015 -16998332 - LTR67 LTR ERVL -357 200 91 237 276 13 13 chr4 185333834 185333910 -16994437 - LTR33A LTR ERVL 0 523 448 290 364 57 17 chr4 185334192 185334368 -16993979 - LTR33 LTR ERVL -314 207 25 694 32 0 21 chr4 185335319 185335414 -16992933 + (TTTC)n Simple_repeat Simple_repeat 4 96 0 350 360 49 16 chr4 185335618 185335865 -16992482 - LTR16C LTR ERVL 0 491 237 228 250 135 48 chr4 185336323 185336427 -16991920 + L2 LINE L2 3192 3304 -9 372 329 94 6 chr4 185337845 185338015 -16990332 + MIR3 SINE MIR 20 204 -4 21 0 0 0 chr4 185338201 185338222 -16990125 + AT_rich Low_complexity Low_complexity 1 21 0 228 318 0 11 chr4 185338499 185338587 -16989760 + MER103 DNA DNA 2 88 -78 343 344 46 83 chr4 185339073 185339375 -16988972 - L2 LINE L2 -2 3270 2980 218 284 136 45 chr4 185339641 185339817 -16988530 - L2 LINE L2 -571 2743 2552 2004 173 8 19 chr4 185339830 185339931 -16988416 + MER47A DNA MER2_type 2 103 -2220 2556 123 46 10 chr4 185339931 185340344 -16988003 + MSTA LTR MaLR 1 428 0 2004 173 8 19 chr4 185340344 185340611 -16987736 + MER47A DNA MER2_type 103 366 0 435 355 81 58 chr4 185340660 185341450 -16986897 - L2 LINE L2 -851 2463 1647 643 209 49 93 chr4 185341450 185341675 -16986672 - MER20 DNA MER1_type -3 216 2 435 355 81 58 chr4 185341675 185341816 -16986531 - L2 LINE L2 -1667 1647 1511 28 0 0 0 chr4 185342675 185342703 -16985644 + AT_rich Low_complexity Low_complexity 1 28 0 339 297 48 37 chr4 185342775 185343044 -16985303 - L1M4 LINE L1 -1088 5058 4787 224 308 131 9 chr4 185343109 185343216 -16985131 - MIR3 SINE MIR -52 156 37 1997 111 70 25 chr4 185345755 185346114 -16982233 - THE1C LTR MaLR 0 375 1 404 322 101 82 chr4 185346362 185347083 -16981264 - L2 LINE L2 -812 2502 1768 210 380 70 8 chr4 185347107 185347236 -16981111 - L2 LINE L2 -15 3298 3162 204 40 0 0 chr4 185348159 185348184 -16980163 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1576 137 30 48 chr4 185348197 185348468 -16979879 - AluSx SINE Alu -41 271 6 233 246 16 0 chr4 185349287 185349348 -16978999 + LTR67 LTR ERVL 496 557 0 1499 201 40 0 chr4 185349782 185350056 -16978291 + AluJb SINE Alu 1 285 -27 499 327 77 56 chr4 185350686 185351103 -16977244 + ERVL LTR ERVL 1085 1526 -4238 1793 213 16 21 chr4 185351103 185351479 -16976868 + MLT1A2 LTR MaLR 1 374 0 499 327 77 56 chr4 185351479 185351799 -16976548 + ERVL LTR ERVL 1526 1838 -3926 224 233 14 0 chr4 185352327 185352400 -16975947 + (TA)n Simple_repeat Simple_repeat 1 74 0 562 128 17 0 chr4 185352416 185352533 -16975814 + (TCTA)n Simple_repeat Simple_repeat 4 122 0 348 64 0 0 chr4 185352533 185352580 -16975767 + (CA)n Simple_repeat Simple_repeat 2 48 0 412 345 82 18 chr4 185352677 185353005 -16975342 + ERVL LTR ERVL 2486 2834 -2930 254 335 24 12 chr4 185353232 185353402 -16974945 + ERVL LTR ERVL 5166 5337 -427 26 30 0 0 chr4 185353503 185353536 -16974811 + AT_rich Low_complexity Low_complexity 1 33 0 214 193 26 18 chr4 185354752 185354866 -16973481 + (TA)n Simple_repeat Simple_repeat 2 116 0 21 0 0 0 chr4 185354876 185354897 -16973450 + AT_rich Low_complexity Low_complexity 1 21 0 2086 286 67 40 chr4 185354962 185356016 -16972331 - L2 LINE L2 -171 3142 2066 606 301 131 16 chr4 185356103 185356539 -16971808 - L1MEd LINE L1 -1929 4200 3715 32 26 0 0 chr4 185356550 185356589 -16971758 + AT_rich Low_complexity Low_complexity 1 39 0 332 311 104 32 chr4 185356601 185356948 -16971399 - L1MEd LINE L1 -2452 3677 3306 2577 101 8 0 chr4 185356949 185357315 -16971032 - L1PB1 LINE L1 -1 6150 5782 259 203 27 0 chr4 185357332 185357406 -16970941 + (TATG)n Simple_repeat Simple_repeat 2 77 0 325 243 0 75 chr4 185357408 185357515 -16970832 + L1MC4 LINE L1 6604 6702 -1340 5215 137 17 5 chr4 185357520 185358856 -16969491 - L1PBa LINE L1 -4734 2129 634 490 295 52 65 chr4 185358910 185359052 -16969295 - L1MEd LINE L1 -2978 3151 3009 411 21 0 0 chr4 185359052 185359100 -16969247 + (CA)n Simple_repeat Simple_repeat 2 49 0 490 295 52 65 chr4 185359100 185359540 -16968807 - L1MEd LINE L1 -3120 3009 2577 25 80 0 30 chr4 185359541 185359641 -16968706 + AT_rich Low_complexity Low_complexity 1 97 0 26 64 0 0 chr4 185359730 185359777 -16968570 + AT_rich Low_complexity Low_complexity 1 47 0 2346 82 0 3 chr4 185359787 185360079 -16968268 + AluY SINE Alu 1 291 -20 31 68 0 0 chr4 185360085 185360144 -16968203 + AT_rich Low_complexity Low_complexity 1 59 0 25 31 0 0 chr4 185360260 185360292 -16968055 + AT_rich Low_complexity Low_complexity 1 32 0 315 320 90 51 chr4 185360775 185361031 -16967316 - L1MEd LINE L1 -4876 1243 978 2560 148 26 29 chr4 185361031 185361261 -16967086 - Tigger2 DNA MER2_type 0 2718 2488 1982 106 77 0 chr4 185361261 185361535 -16966812 + AluSx SINE Alu 1 295 -17 2560 148 26 29 chr4 185361535 185361757 -16966590 - Tigger2 DNA MER2_type -230 2488 2267 373 182 15 0 chr4 185361743 185361809 -16966538 - Tigger2 DNA MER2_type -2651 67 1 * 299 195 26 0 chr4 185363193 185363270 -16965077 + GA-rich Low_complexity Low_complexity 3 81 0 598 286 74 23 chr4 185363414 185363631 -16964716 - MIR SINE MIR -15 247 20 222 385 78 28 chr4 185363647 185364047 -16964300 + L3b LINE CR1 1111 1530 -53 833 253 119 48 chr4 185364124 185364520 -16963827 + MLT1C LTR MaLR 44 467 0 239 324 45 9 chr4 185364782 185364893 -16963454 + L3 LINE CR1 625 739 -838 252 259 9 65 chr4 185364934 185365042 -16963305 - MIR SINE MIR 0 262 161 185 319 120 97 chr4 185365067 185365096 -16963251 + L3 LINE CR1 956 983 -594 1742 182 7 0 chr4 185365096 185365393 -16962954 - AluSx SINE Alu -13 299 1 185 319 120 97 chr4 185365393 185365579 -16962768 + L3 LINE CR1 983 1176 -401 535 322 73 28 chr4 185365606 185365895 -16962452 + L3 LINE CR1 1275 1576 -1 598 220 95 43 chr4 185366100 185366318 -16962029 + MIR SINE MIR 25 253 -9 206 309 71 71 chr4 185366615 185366825 -16961522 + MIR SINE MIR 32 241 -21 200 159 0 23 chr4 185367136 185367180 -16961167 + (TG)n Simple_repeat Simple_repeat 2 44 0 555 286 61 0 chr4 185367421 185367634 -16960713 - HAL1 LINE L1 -890 1617 1392 344 281 61 35 chr4 185367648 185367762 -16960585 + L2 LINE L2 3189 3305 -8 216 0 0 0 chr4 185368234 185368258 -16960089 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 243 0 0 0 chr4 185368566 185368593 -16959754 + (CA)n Simple_repeat Simple_repeat 2 28 0 180 0 0 0 chr4 185369637 185369657 -16958690 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 486 33 0 0 chr4 185369671 185369731 -16958616 + (TG)n Simple_repeat Simple_repeat 1 60 0 2293 107 0 3 chr4 185369732 185370032 -16958315 - AluSc SINE Alu -7 302 4 1789 195 77 34 chr4 185370784 185371226 -16957121 + MLT1C LTR MaLR 7 467 0 328 350 34 24 chr4 185372955 185373249 -16955098 - L1MEd LINE L1 -5300 819 523 1103 198 9 22 chr4 185373665 185373887 -16954460 - MER20 DNA MER1_type 0 219 1 411 235 95 84 chr4 185374038 185374217 -16954130 + MIR SINE MIR 1 181 -81 27 0 0 0 chr4 185374592 185374619 -16953728 + AT_rich Low_complexity Low_complexity 1 27 0 357 264 180 12 chr4 185374717 185374884 -16953463 - MIR SINE MIR -56 206 12 1398 198 22 54 chr4 185375022 185375335 -16953012 + AluJo SINE Alu 1 303 -9 474 259 25 43 chr4 185376120 185376282 -16952065 - Charlie8 DNA MER1_type -2258 159 1 332 311 74 0 chr4 185376370 185376518 -16951829 + MIR SINE MIR 46 204 -58 3958 171 27 8 chr4 185376801 185377509 -16950838 - MER72 LTR ERV1 0 722 2 217 113 0 38 chr4 185378335 185378388 -16949959 + (TAAAA)n Simple_repeat Simple_repeat 1 51 0 745 170 102 7 chr4 185378555 185378702 -16949645 - AluJo SINE Alu -30 282 122 1240 228 31 59 chr4 185378712 185379032 -16949315 - AluJb SINE Alu -1 311 1 21 0 0 0 chr4 185380747 185380768 -16947579 + AT_rich Low_complexity Low_complexity 1 21 0 1896 127 25 18 chr4 185380935 185381219 -16947128 + AluSq SINE Alu 1 286 -27 30 0 0 0 chr4 185381219 185381249 -16947098 + AT_rich Low_complexity Low_complexity 1 30 0 4092 129 24 120 chr4 185381558 185383088 -16945259 - pTR5 LTR ERV1 0 2606 1523 3517 133 58 17 chr4 185383240 185383827 -16944520 + LTR9 LTR ERV1 2 612 0 253 244 26 122 chr4 185384199 185384355 -16943992 + MIR SINE MIR 66 206 -56 707 303 66 5 chr4 185384384 185384595 -16943752 + MIR SINE MIR 2 225 -37 511 103 26 0 chr4 185384888 185384966 -16943381 + MADE1 DNA Mariner 1 80 0 250 378 0 0 chr4 185384992 185385082 -16943265 + L2 LINE L2 3224 3313 0 1905 128 11 4 chr4 185386415 185386720 -16941627 - AluSx SINE Alu 0 307 1 300 176 68 0 chr4 185386916 185386990 -16941357 + L1M LINE L1 5295 5373 -2669 21 0 0 0 chr4 185387115 185387136 -16941211 + AT_rich Low_complexity Low_complexity 1 21 0 188 35 35 0 chr4 185387150 185387179 -16941168 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2355 154 27 0 chr4 185387179 185387582 -16940765 - L1PA16 LINE L1 -10 6156 5743 193 327 0 0 chr4 185387711 185387766 -16940581 + L2 LINE L2 3246 3300 -13 2807 74 26 0 chr4 185388246 185388624 -16939723 + L1PA7 LINE L1 5764 6151 -3 1816 159 6 13 chr4 185389895 185390209 -16938138 - AluJo SINE Alu 0 312 1 685 183 24 61 chr4 185390862 185391026 -16937321 + AluSg/x SINE Alu 137 294 -18 409 221 117 84 chr4 185391298 185391452 -16936895 - MLT1G1 LTR MaLR -113 477 319 1986 94 12 0 chr4 185391452 185391708 -16936639 + AluSx SINE Alu 1 259 -53 301 127 18 0 chr4 185391761 185391816 -16936531 + AluSx SINE Alu 244 299 -2 652 301 23 31 chr4 185391981 185392237 -16936110 - MLT1G1 LTR MaLR -341 254 1 230 315 91 21 chr4 185392238 185392381 -16935966 - MLT1D-int LTR MaLR -1 1734 1582 2151 109 0 10 chr4 185392525 185392819 -16935528 - AluSc SINE Alu -18 291 1 181 311 117 19 chr4 185393939 185394042 -16934305 + MIR SINE MIR 59 171 -91 391 376 29 14 chr4 185394526 185394736 -16933611 - MIR SINE MIR -18 244 32 1295 245 113 35 chr4 185394935 185395446 -16932901 + MLT1E2 LTR MaLR 62 612 -14 1290 172 12 49 chr4 185396412 185396656 -16931691 + AluJb SINE Alu 50 284 -28 251 278 159 60 chr4 185396717 185396868 -16931479 - MLT1D-int LTR MaLR -183 1188 1023 2049 113 11 0 chr4 185397179 185397462 -16930885 - AluSx SINE Alu -26 286 1 313 260 66 48 chr4 185397763 185397990 -16930357 - MLT1D-int LTR MaLR -830 541 311 1181 246 125 35 chr4 185398028 185398183 -16930164 - MLT1D LTR MaLR 0 505 365 1999 96 8 4 chr4 185398183 185398443 -16929904 - AluSq SINE Alu -14 299 39 1181 246 125 35 chr4 185398443 185398750 -16929597 - MLT1D LTR MaLR -140 365 1 994 253 80 3 chr4 185398867 185399179 -16929168 - MLT1G LTR MaLR -20 570 235 623 316 40 4 chr4 185399583 185399808 -16928539 + MIR SINE MIR 14 246 -16 219 114 0 0 chr4 185400934 185400969 -16927378 + (TTA)n Simple_repeat Simple_repeat 2 36 0 195 333 31 21 chr4 185401675 185401771 -16926576 - MIR SINE MIR -70 192 96 2398 91 0 0 chr4 185402181 185402489 -16925858 - AluY SINE Alu -3 308 1 369 336 61 36 chr4 185402990 185403237 -16925110 + L1MEd LINE L1 916 1168 -4951 975 259 102 48 chr4 185403250 185403752 -16924595 - MLT1F LTR MaLR -13 529 1 2206 92 0 23 chr4 185404055 185404360 -16923987 + AluSx SINE Alu 1 298 -14 265 270 0 45 chr4 185404607 185404696 -16923651 - MLT1I LTR MaLR -10 399 315 234 343 27 14 chr4 185404816 185404962 -16923385 - MLT1I LTR MaLR -188 221 74 1804 154 25 0 chr4 185405281 185405560 -16922787 + AluJb SINE Alu 1 286 -26 230 284 14 0 chr4 185407535 185407609 -16920738 - MLT1J2 LTR MaLR -114 336 262 661 160 107 0 chr4 185408256 185408387 -16919960 - MLT2C2 LTR ERVL -85 379 235 811 203 0 33 chr4 185408388 185408570 -16919777 - FRAM SINE Alu 0 176 1 198 0 0 0 chr4 185409303 185409325 -16919022 + (TTA)n Simple_repeat Simple_repeat 2 23 0 26 64 0 0 chr4 185410495 185410542 -16917805 + AT_rich Low_complexity Low_complexity 1 47 0 2365 107 0 0 chr4 185410608 185410916 -16917431 + AluSg SINE Alu 1 308 -2 735 302 17 30 chr4 185411032 185411267 -16917080 + MIR SINE MIR 27 258 -4 1912 303 238 22 chr4 185411537 185413050 -16915297 - L2 LINE L2 -1442 1872 34 1711 136 4 15 chr4 185413151 185413415 -16914932 - AluSx SINE Alu -2 310 50 1016 208 33 9 chr4 185413589 185413801 -16914546 - MER20 DNA MER1_type -1 218 2 3797 199 86 122 chr4 185415312 185416969 -16911378 + L1MDa LINE L1 18 1615 -4925 1572 209 88 28 chr4 185416982 185417541 -16910806 + L1M4 LINE L1 4714 5309 -843 22 35 0 0 chr4 185417976 185418005 -16910342 + AT_rich Low_complexity Low_complexity 1 29 0 36 62 0 0 chr4 185420103 185420167 -16908180 + AT_rich Low_complexity Low_complexity 1 64 0 405 296 47 35 chr4 185420224 185420396 -16907951 - MIR SINE MIR -74 188 15 4248 165 41 42 chr4 185420484 185420539 -16907808 + L1MB2 LINE L1 5165 5219 -952 1794 184 45 18 chr4 185420539 185420919 -16907428 - MLT1B LTR MaLR 0 390 1 4248 165 41 42 chr4 185420919 185421886 -16906461 + L1MB2 LINE L1 5219 6171 0 1702 131 73 0 chr4 185421967 185422241 -16906106 + AluSx SINE Alu 1 294 -18 244 213 0 25 chr4 185422653 185422733 -16905614 - MLT1I LTR MaLR -8 401 324 2095 101 36 0 chr4 185422846 185423122 -16905225 - AluSx SINE Alu -26 286 1 1570 243 49 18 chr4 185423127 185423580 -16904767 - MLT1C LTR MaLR 0 467 1 468 224 35 28 chr4 185423597 185423740 -16904607 - MLT1I LTR MaLR -218 191 48 650 226 259 49 chr4 185423821 185424289 -16904058 + MLT1G LTR MaLR 1 566 -24 22 0 0 0 chr4 185424489 185424511 -16903836 + AT_rich Low_complexity Low_complexity 1 22 0 947 213 70 0 chr4 185424574 185424832 -16903515 - L1MA4 LINE L1 -5 6295 6020 2203 103 0 20 chr4 185425782 185426084 -16902263 + AluSg SINE Alu 1 296 -14 33 0 0 0 chr4 185426901 185426934 -16901413 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr4 185427337 185427366 -16900981 + AT_rich Low_complexity Low_complexity 1 29 0 2271 81 17 0 chr4 185429336 185429632 -16898715 + AluSc SINE Alu 7 307 -2 420 282 116 24 chr4 185429821 185430205 -16898142 + L1ME LINE L1 5271 5693 -428 240 322 239 6 chr4 185430873 185431053 -16897294 - MIR SINE MIR -6 256 35 22 0 0 0 chr4 185432538 185432560 -16895787 + AT_rich Low_complexity Low_complexity 1 22 0 213 167 0 0 chr4 185432614 185432650 -16895697 - MIR SINE MIR -16 246 211 1382 217 47 58 chr4 185433252 185433634 -16894713 + MLT1B LTR MaLR 7 384 -6 2514 180 29 5 chr4 185434121 185434570 -16893777 + MER66B LTR ERV1 27 486 0 308 250 43 26 chr4 185435090 185435206 -16893141 + CT-rich Low_complexity Low_complexity 3 120 0 1974 138 7 7 chr4 185435774 185436064 -16892283 + AluSx SINE Alu 3 292 -20 318 308 141 19 chr4 185437027 185437183 -16891164 - MIR3 SINE MIR -21 187 13 2517 57 0 0 chr4 185437298 185437595 -16890752 + AluY SINE Alu 1 297 -14 1121 108 0 0 chr4 185439700 185439848 -16888499 + AluY SINE Alu 147 294 -17 2048 121 13 13 chr4 185440030 185440336 -16888011 + AluSx SINE Alu 1 306 -6 27 29 0 0 chr4 185440420 185440454 -16887893 + AT_rich Low_complexity Low_complexity 1 34 0 1951 143 0 3 chr4 185442118 185442405 -16885942 - AluSx SINE Alu -24 288 3 209 329 185 30 chr4 185443456 185443964 -16884383 - L2 LINE L2 -1217 2097 1511 439 258 45 41 chr4 185445461 185445682 -16882665 - L1ME4a LINE L1 -237 5884 5663 328 145 13 26 chr4 185445790 185445866 -16882481 + CT-rich Low_complexity Low_complexity 3 77 0 586 316 15 5 chr4 185445992 185446188 -16882159 - L1MC4a LINE L1 -993 6815 6618 337 234 113 7 chr4 185447557 185447698 -16880649 - L1MC4a LINE L1 -1804 6004 5849 382 275 0 23 chr4 185448118 185448249 -16880098 - MER112 DNA MER1_type 0 260 133 42468 35 22 4 chr4 185448999 185449325 -16879022 + L1PA3 LINE L1 2 321 -5854 2595 7 0 0 chr4 185449325 185449642 -16878705 + AluYa5 SINE Alu 1 317 0 42468 35 22 4 chr4 185449642 185455380 -16872967 + L1PA3 LINE L1 321 6175 0 192 125 0 0 chr4 185455612 185455644 -16872703 + (CATATA)n Simple_repeat Simple_repeat 3 34 0 1939 176 106 11 chr4 185455655 185456099 -16872248 - L1MA9 LINE L1 0 6312 5827 2159 113 14 0 chr4 185457346 185457637 -16870710 + AluSx SINE Alu 1 295 -17 1573 173 78 12 chr4 185458146 185458492 -16869855 + L1MC2 LINE L1 5976 6344 0 3103 119 23 10 chr4 185460460 185460982 -16867365 + L1MA4 LINE L1 5767 6295 -5 399 236 57 16 chr4 185461013 185461136 -16867211 + MIR SINE MIR 20 147 -115 22 35 0 0 chr4 185462734 185462763 -16865584 + AT_rich Low_complexity Low_complexity 1 29 0 204 286 0 39 chr4 185462782 185462859 -16865488 + MIR SINE MIR 90 163 -99 * 376 211 30 60 chr4 185462846 185462979 -16865368 - MIR SINE MIR 0 262 134 2326 107 0 0 chr4 185463558 185463866 -16864481 + AluSg1 SINE Alu 1 308 -1 1473 244 82 23 chr4 185463953 185464572 -16863775 - L1ME2 LINE L1 -9 6155 5456 227 255 108 20 chr4 185464670 185464772 -16863575 - MER112 DNA MER1_type -40 220 110 * 3788 204 62 15 chr4 185464769 185465774 -16862573 + MER106B DNA MER1_type 6 1057 -2 239 207 11 103 chr4 185465907 185465994 -16862353 - MER112 DNA MER1_type -179 81 3 343 319 73 37 chr4 185466032 185466275 -16862072 - MIR3 SINE MIR 0 262 3 234 274 11 42 chr4 185466434 185466529 -16861818 + MIR SINE MIR 127 218 -44 207 337 12 0 chr4 185467392 185467475 -16860872 - L2 LINE L2 -1055 2259 2176 222 211 0 0 chr4 185468224 185468262 -16860085 + (CATA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr4 185468303 185468324 -16860023 + AT_rich Low_complexity Low_complexity 1 21 0 191 343 30 50 chr4 185470147 185470246 -16858101 + MIR SINE MIR 50 146 -62 46 45 0 0 chr4 185470670 185470737 -16857610 + AT_rich Low_complexity Low_complexity 1 67 0 461 325 88 37 chr4 185470783 185471134 -16857213 - L2 LINE L2 -1011 2303 1935 2495 164 24 2 chr4 185471312 185471727 -16856620 + MSTB LTR MaLR 1 424 -2 422 303 33 0 chr4 185473120 185473242 -16855105 + MIR SINE MIR 31 156 -106 26 0 0 0 chr4 185473350 185473376 -16854971 + AT_rich Low_complexity Low_complexity 1 26 0 214 273 15 30 chr4 185473392 185473458 -16854889 - L2 LINE L2 -9 3263 3199 2124 119 0 19 chr4 185473506 185473824 -16854523 + AluSx SINE Alu 1 312 0 24 0 0 0 chr4 185474913 185474937 -16853410 + AT_rich Low_complexity Low_complexity 1 24 0 2246 99 7 0 chr4 185476986 185477279 -16851068 + AluSq SINE Alu 2 296 -17 301 311 78 44 chr4 185477459 185477639 -16850708 + L2 LINE L2 2202 2387 -927 340 327 82 79 chr4 185477663 185477765 -16850582 - L2 LINE L2 -18 3254 3154 2086 118 0 13 chr4 185477765 185478069 -16850278 + AluSq SINE Alu 3 302 -11 340 327 82 79 chr4 185478069 185478284 -16850063 - L2 LINE L2 -118 3154 2936 387 299 140 77 chr4 185478640 185479082 -16849265 - L2 LINE L2 -613 2701 2232 1878 156 0 13 chr4 185479693 185480008 -16848339 - AluJb SINE Alu 0 312 2 300 269 0 54 chr4 185480459 185480552 -16847795 + L1MC4 LINE L1 6616 6703 -1339 316 60 0 20 chr4 185480556 185480606 -16847741 - L1PA14 LINE L1 -13 6148 6100 381 57 0 0 chr4 185480606 185480656 -16847691 - L1PA14 LINE L1 -9 6152 6100 344 60 0 0 chr4 185480675 185480725 -16847622 - L1PA14 LINE L1 -12 6149 6100 344 60 0 0 chr4 185480744 185480794 -16847553 - L1PA14 LINE L1 -12 6149 6100 371 75 0 0 chr4 185480794 185480844 -16847503 - L1PA14 LINE L1 -9 6152 6100 238 191 0 0 chr4 185480844 185480891 -16847456 - L1PA14 LINE L1 -12 6149 6103 381 57 0 0 chr4 185480891 185480944 -16847403 - L1PA14 LINE L1 -9 6152 6100 269 98 30 0 chr4 185480963 185481025 -16847322 - L1PA14 LINE L1 -12 6149 6082 370 40 0 0 chr4 185481028 185481078 -16847269 - L1PA14 LINE L1 -12 6149 6100 380 57 0 0 chr4 185481078 185481128 -16847219 - L1PA14 LINE L1 -9 6152 6100 1001 79 7 0 chr4 185481128 185481264 -16847083 - L1PA14 LINE L1 -9 6152 6013 189 264 150 79 chr4 185481543 185481683 -16846664 - L2 LINE L2 -38 3275 3126 1998 170 13 5 chr4 185482016 185482404 -16845943 + L1MA4 LINE L1 5902 6292 -8 194 343 14 14 chr4 185482417 185482490 -16845857 - L2 LINE L2 -528 2786 2714 974 150 0 6 chr4 185482498 185482658 -16845689 - AluJo SINE Alu -17 295 137 22 56 0 0 chr4 185483033 185483069 -16845278 + AT_rich Low_complexity Low_complexity 1 36 0 194 152 0 43 chr4 185484661 185484707 -16843640 + (CATA)n Simple_repeat Simple_repeat 4 47 0 25 31 0 0 chr4 185485557 185485589 -16842758 + AT_rich Low_complexity Low_complexity 1 32 0 611 189 8 30 chr4 185486057 185486189 -16842158 - AluJo SINE Alu -181 131 3 23 0 0 0 chr4 185487168 185487191 -16841156 + AT_rich Low_complexity Low_complexity 1 23 0 243 298 141 8 chr4 185487799 185487920 -16840427 - MER5A DNA MER1_type 0 189 53 815 150 34 0 chr4 185488533 185488680 -16839667 + L1MA9 LINE L1 6161 6312 0 380 293 101 10 chr4 185489159 185489367 -16838980 + L1ME1 LINE L1 5052 5278 -868 2604 237 73 25 chr4 185489369 185490182 -16838165 + L1ME1 LINE L1 5315 6166 0 364 289 0 32 chr4 185490500 185490618 -16837729 + MIR SINE MIR 47 157 -67 32 0 0 0 chr4 185491268 185491300 -16837047 + AT_rich Low_complexity Low_complexity 1 32 0 449 327 90 5 chr4 185492782 185493005 -16835342 + MIR SINE MIR 11 252 -10 22 99 0 0 chr4 185493131 185493202 -16835145 + AT_rich Low_complexity Low_complexity 1 71 0 299 146 78 0 chr4 185493681 185493784 -16834563 + (TA)n Simple_repeat Simple_repeat 1 111 0 21 36 0 0 chr4 185494216 185494244 -16834103 + AT_rich Low_complexity Low_complexity 1 28 0 5560 144 19 3 chr4 185494387 185495325 -16833022 + L1PA11 LINE L1 4400 5352 -794 633 52 1 0 chr4 185495319 185495431 -16832916 - L1P4 LINE L1 -390 5773 5601 * 684 59 0 20 chr4 185495426 185495527 -16832820 + L1PA11 LINE L1 5346 5444 -717 2038 95 23 7 chr4 185495627 185495931 -16832416 + L1PA11 LINE L1 5866 6174 0 440 108 42 59 chr4 185496104 185496426 -16831921 + (TA)n Simple_repeat Simple_repeat 1 316 0 495 157 26 16 chr4 185496448 185496762 -16831585 + (TA)n Simple_repeat Simple_repeat 1 317 0 256 262 0 78 chr4 185496838 185496941 -16831406 + MARNA DNA Mariner 355 449 -137 2650 178 26 33 chr4 185498141 185498793 -16829554 - L1PA16 LINE L1 -1 6130 5461 241 137 55 14 chr4 185499728 185499801 -16828546 + (TA)n Simple_repeat Simple_repeat 2 77 0 401 250 91 53 chr4 185500806 185501014 -16827333 - MIR SINE MIR -1 261 46 683 307 224 14 chr4 185501702 185502145 -16826202 + L3 LINE CR1 878 1413 -164 1761 151 13 7 chr4 185503673 185503972 -16824375 + AluJo SINE Alu 1 301 -11 54 29 0 0 chr4 185504098 185504166 -16824181 + AT_rich Low_complexity Low_complexity 1 68 0 200 290 54 43 chr4 185504532 185504625 -16823722 + MIR SINE MIR 100 193 -69 279 173 0 0 chr4 185504676 185504728 -16823619 + GA-rich Low_complexity Low_complexity 2 53 0 21 0 0 0 chr4 185504947 185504968 -16823379 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 185505565 185505593 -16822754 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 185506226 185506254 -16822093 + AT_rich Low_complexity Low_complexity 1 28 0 372 265 101 73 chr4 185506862 185507548 -16820799 + L1M4 LINE L1 2683 3387 -2759 344 286 64 44 chr4 185510137 185510305 -16818042 - MIR SINE MIR -32 176 20 1874 213 47 26 chr4 185510445 185510937 -16817410 - MLT1D LTR MaLR -3 502 1 1591 291 25 2 chr4 185511361 185511798 -16816549 + LTR16C LTR ERVL 45 491 0 244 331 110 7 chr4 185512232 185512368 -16815979 + MIR SINE MIR 49 198 -64 * 469 327 128 43 chr4 185512367 185513145 -16815202 - L2 LINE L2 0 3313 2448 222 329 41 0 chr4 185513145 185513218 -16815129 + MIR SINE MIR 182 257 -5 1981 165 77 28 chr4 185515439 185515905 -16812442 + L1MA7 LINE L1 5803 6291 0 37 0 0 0 chr4 185516040 185516077 -16812270 + AT_rich Low_complexity Low_complexity 1 37 0 1005 217 17 116 chr4 185518349 185518754 -16809593 + MLT1A1 LTR MaLR 1 365 0 597 277 52 59 chr4 185519092 185519381 -16808966 + L1MEd LINE L1 357 643 -5476 325 262 73 78 chr4 185519441 185519647 -16808700 + L1ME3A LINE L1 5745 5949 -221 226 333 47 16 chr4 185519921 185520050 -16808297 - MIR SINE MIR -11 251 119 503 204 0 0 chr4 185521123 185521216 -16807131 + FLAM_A SINE Alu 35 127 -15 504 282 98 34 chr4 185521272 185521713 -16806634 + L1M3de LINE L1 1021 1467 -4855 2485 46 7 0 chr4 185521713 185522015 -16806332 - AluY SINE Alu -7 304 1 504 282 98 34 chr4 185522015 185522178 -16806169 + L1M3de LINE L1 1467 1618 -4704 277 275 0 0 chr4 185522330 185522399 -16805948 + L1ME LINE L1 4530 4598 -1548 1719 208 0 3 chr4 185522466 185522779 -16805568 + AluJb SINE Alu 1 312 0 731 281 15 20 chr4 185522919 185523505 -16804842 + L1ME LINE L1 4915 5503 -661 506 273 50 88 chr4 185523507 185523826 -16804521 + LTR33 LTR ERVL 165 471 -50 1992 279 71 40 chr4 185523861 185524581 -16803766 - L2 LINE L2 -527 2787 2046 222 37 0 0 chr4 185524649 185524676 -16803671 + (TA)n Simple_repeat Simple_repeat 2 28 0 1207 265 51 43 chr4 185524683 185525086 -16803261 + MER74B LTR ERVL 76 485 -137 1748 186 16 30 chr4 185525086 185525456 -16802891 + MLT1A1 LTR MaLR 1 365 0 1207 265 51 43 chr4 185525456 185525539 -16802808 + MER74B LTR ERVL 485 566 -56 239 160 100 0 chr4 185525603 185525653 -16802694 - L2 LINE L2 -1384 1930 1876 21 0 0 0 chr4 185525654 185525675 -16802672 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr4 185527142 185527171 -16801176 + (CA)n Simple_repeat Simple_repeat 2 30 0 1694 211 50 18 chr4 185528722 185529106 -16799241 + MSTD LTR MaLR 1 396 0 394 279 66 73 chr4 185529310 185529597 -16798750 + MLT1J LTR MaLR 226 510 -1 979 158 33 92 chr4 185529845 185530085 -16798262 - AluJo SINE Alu -14 298 73 889 19 0 0 chr4 185530879 185530984 -16797363 + L1PA3 LINE L1 6051 6155 0 26 30 0 0 chr4 185533056 185533089 -16795258 + AT_rich Low_complexity Low_complexity 1 33 0 2379 63 0 13 chr4 185533193 185533496 -16794851 + AluY SINE Alu 1 299 -12 2164 97 7 0 chr4 185533801 185534080 -16794267 + AluY SINE Alu 1 281 -30 666 219 0 0 chr4 185534598 185534726 -16793621 + FLAM_C SINE Alu 1 128 -15 183 42 0 0 chr4 185534810 185534834 -16793513 + (CA)n Simple_repeat Simple_repeat 1 24 0 870 243 64 50 chr4 185535120 185535510 -16792837 + L1MB5 LINE L1 3955 4354 -1792 661 157 25 38 chr4 185535610 185535769 -16792578 + L1MA2 LINE L1 6148 6304 0 1422 198 32 3 chr4 185535773 185536087 -16792260 + L1MA5 LINE L1 5476 5798 -502 313 239 8 8 chr4 185536087 185536221 -16792126 + (TA)n Simple_repeat Simple_repeat 1 134 0 2281 154 2 34 chr4 185536231 185536667 -16791680 + L1MA5 LINE L1 5805 6226 -74 727 301 37 42 chr4 185537770 185538152 -16790195 + MER110-int LTR ERV1 1846 2225 -2422 946 300 16 50 chr4 185538209 185538646 -16789701 + MER110-int LTR ERV1 2597 3018 -1629 364 286 0 0 chr4 185538710 185538787 -16789560 + MER110-int LTR ERV1 2597 2673 -1974 1590 72 5 5 chr4 185538787 185538995 -16789352 - AluSp SINE Alu -2 311 104 2366 76 0 7 chr4 185540358 185540660 -16787687 + AluSx SINE Alu 1 300 -12 1710 154 16 26 chr4 185542454 185542759 -16785588 + AluJb SINE Alu 10 311 -1 31 0 0 0 chr4 185544120 185544151 -16784196 + AT_rich Low_complexity Low_complexity 1 31 0 282 194 16 16 chr4 185544252 185544314 -16784033 - MIR SINE MIR -5 257 196 1970 139 0 17 chr4 185544324 185544625 -16783722 - AluJb SINE Alu -11 301 6 659 139 0 0 chr4 185544726 185544834 -16783513 + L1MA7 LINE L1 6180 6287 -4 1689 201 4 35 chr4 185544871 185545323 -16783024 + L1MB5 LINE L1 4922 5359 -787 2552 50 0 0 chr4 185545331 185545630 -16782717 + AluY SINE Alu 1 299 -12 1455 169 44 80 chr4 185545631 185545646 -16782701 + L1MB5 LINE L1 5777 5791 -383 387 0 0 0 chr4 185545646 185545689 -16782658 + (TA)n Simple_repeat Simple_repeat 1 43 0 1455 169 44 80 chr4 185545689 185546086 -16782261 + L1MB5 LINE L1 5791 6174 0 22 35 0 0 chr4 185547479 185547508 -16780839 + AT_rich Low_complexity Low_complexity 1 29 0 651 56 37 0 chr4 185547809 185547917 -16780430 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 1929 139 39 27 chr4 185548236 185548573 -16779774 - MER2 DNA MER2_type -2 342 2 31 92 0 0 chr4 185550688 185550775 -16777572 + AT_rich Low_complexity Low_complexity 1 87 0 579 357 40 9 chr4 185551164 185551391 -16776956 - MIR SINE MIR -9 253 20 387 308 19 19 chr4 185551501 185551605 -16776742 + L2 LINE L2 3161 3264 -8 462 194 112 0 chr4 185551715 185551813 -16776534 + MLT1B LTR MaLR 1 109 -281 750 143 19 39 chr4 185551967 185552121 -16776226 + MLT1B LTR MaLR 120 270 -120 2259 81 0 32 chr4 185553044 185553353 -16774994 + AluY SINE Alu 12 310 -1 23 0 0 0 chr4 185553388 185553411 -16774936 + AT_rich Low_complexity Low_complexity 1 23 0 414 266 18 9 chr4 185553434 185553547 -16774800 - MIR SINE MIR -141 121 8 605 188 132 89 chr4 185555475 185555747 -16772600 - MER46C DNA MER2_type 0 338 50 1936 160 16 0 chr4 185555747 185556054 -16772293 + AluSx SINE Alu 1 312 0 605 188 132 89 chr4 185556054 185556084 -16772263 - MER46C DNA MER2_type -288 50 23 22 35 0 0 chr4 185556353 185556382 -16771965 + AT_rich Low_complexity Low_complexity 1 29 0 362 186 0 0 chr4 185557073 185557132 -16771215 - Tigger5 DNA MER2_type -3 2320 2262 1321 198 13 0 chr4 185557136 185557363 -16770984 - Tigger5 DNA MER2_type -2090 233 4 21 36 0 0 chr4 185558430 185558458 -16769889 + AT_rich Low_complexity Low_complexity 1 28 0 209 200 22 0 chr4 185559076 185559121 -16769226 + (CA)n Simple_repeat Simple_repeat 1 46 0 29 28 0 0 chr4 185559636 185559672 -16768675 + AT_rich Low_complexity Low_complexity 1 36 0 207 196 0 0 chr4 185560022 185560068 -16768279 + A-rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr4 185560786 185560808 -16767539 + GC_rich Low_complexity Low_complexity 1 22 0 223 176 0 20 chr4 185560890 185560941 -16767406 + G-rich Low_complexity Low_complexity 1 50 0 183 152 30 15 chr4 185561338 185561404 -16766943 + (CGG)n Simple_repeat Simple_repeat 3 69 0 198 0 0 0 chr4 185561452 185561474 -16766873 + (CGG)n Simple_repeat Simple_repeat 3 24 0 1194 289 182 28 chr4 185562523 185563264 -16765083 - L3 LINE CR1 -116 1461 607 321 289 128 0 chr4 185563309 185563465 -16764882 - MER5B DNA MER1_type 0 178 3 651 102 51 88 chr4 185563994 185564011 -16764336 - AluSg/x SINE Alu -11 301 285 342 61 0 0 chr4 185564011 185564060 -16764287 + (TG)n Simple_repeat Simple_repeat 2 50 0 651 102 51 88 chr4 185564060 185564179 -16764168 - AluSg/x SINE Alu -27 285 170 434 276 247 53 chr4 185564260 185564392 -16763955 - L1M4 LINE L1 -3000 3146 3041 666 184 26 0 chr4 185564392 185564506 -16763841 + FLAM_C SINE Alu 1 117 -16 434 276 247 53 chr4 185564506 185565053 -16763294 - L1M4 LINE L1 -3105 3041 2335 226 224 35 35 chr4 185565122 185565180 -16763167 + MER110 LTR ERV1 104 161 -330 690 318 27 27 chr4 185565257 185565556 -16762791 + MER110 LTR ERV1 188 486 -5 1251 85 45 6 chr4 185566665 185566842 -16761505 + AluY SINE Alu 128 311 0 695 289 102 39 chr4 185567026 185567438 -16760909 + MER110-int LTR ERV1 3166 3603 -1044 364 280 0 0 chr4 185567506 185567599 -16760748 + MIR SINE MIR 165 257 -5 385 363 42 16 chr4 185567859 185568049 -16760298 - MIR SINE MIR -30 232 38 267 31 0 0 chr4 185568231 185568263 -16760084 + (TG)n Simple_repeat Simple_repeat 2 33 0 231 379 0 25 chr4 185568365 185568526 -16759821 - MIR SINE MIR 0 262 106 2754 217 51 20 chr4 185568575 185569141 -16759206 - L1M4 LINE L1 -1203 4943 4396 2049 119 3 49 chr4 185569141 185569468 -16758879 - AluSx SINE Alu 0 312 1 2754 217 51 20 chr4 185569468 185569833 -16758514 - L1M4 LINE L1 -1750 4396 3802 1403 236 36 30 chr4 185569833 185570332 -16758015 - L1M4 LINE L1 -2550 3596 3095 214 186 0 0 chr4 185570332 185570375 -16757972 + (TA)n Simple_repeat Simple_repeat 2 44 0 198 150 0 0 chr4 185570456 185570496 -16757851 + (TA)n Simple_repeat Simple_repeat 1 40 0 1799 241 54 18 chr4 185570553 185571126 -16757221 - L1M4 LINE L1 -3090 3056 2463 1465 356 72 22 chr4 185572191 185573240 -16755107 - L2 LINE L2 -497 2817 1717 302 219 69 94 chr4 185573361 185573521 -16754826 + L1ME4a LINE L1 5931 6086 -35 189 159 11 57 chr4 185573558 185573646 -16754701 + (TA)n Simple_repeat Simple_repeat 1 84 0 524 117 0 82 chr4 185573658 185573854 -16754493 + (TA)n Simple_repeat Simple_repeat 1 180 0 405 174 0 42 chr4 185573893 185574037 -16754310 + (TA)n Simple_repeat Simple_repeat 1 138 0 3340 121 31 17 chr4 185574139 185574678 -16753669 - LTR10A LTR ERV1 -62 547 1 224 329 41 0 chr4 185575052 185575125 -16753222 - L2 LINE L2 -523 2791 2716 294 206 0 0 chr4 185575841 185575914 -16752433 + CT-rich Low_complexity Low_complexity 4 76 0 696 215 24 19 chr4 185576080 185576289 -16752058 - L1M4 LINE L1 -949 5197 4988 22 56 0 0 chr4 185576295 185576331 -16752016 + AT_rich Low_complexity Low_complexity 1 36 0 2820 219 33 8 chr4 185576978 185577765 -16750582 - L1M4 LINE L1 -2416 3730 2924 613 217 104 39 chr4 185577743 185577973 -16750374 + L1ME2 LINE L1 5910 6154 -10 * 206 297 0 0 chr4 185577979 185578053 -16750294 + (TTA)n Simple_repeat Simple_repeat 2 75 0 1764 160 3 17 chr4 185578115 185578402 -16749945 + AluJo SINE Alu 11 293 -19 643 247 190 63 chr4 185578919 185579219 -16749128 + MER46C DNA MER2_type 1 338 0 2039 233 144 56 chr4 185580094 185580803 -16747544 - MER21B LTR ERV1 -76 787 17 1249 56 0 0 chr4 185580815 185580975 -16747372 - L1PA4 LINE L1 0 6155 5996 2150 194 31 24 chr4 185580997 185581408 -16746939 + Tigger7 DNA MER2_type 1 414 -2073 607 162 9 12 chr4 185581408 185581519 -16746828 - MSTA LTR MaLR 0 428 328 2170 113 0 3 chr4 185581519 185581812 -16746535 + AluSx SINE Alu 1 292 -20 607 162 9 12 chr4 185581812 185581829 -16746518 - MSTA LTR MaLR -100 328 312 461 261 0 0 chr4 185581856 185581948 -16746399 + Tigger7 DNA MER2_type 2396 2487 0 920 172 71 161 chr4 185582934 185583312 -16745035 - MER2 DNA MER2_type 0 344 1 22 35 0 0 chr4 185583415 185583444 -16744903 + AT_rich Low_complexity Low_complexity 1 29 0 436 309 60 30 chr4 185583503 185583704 -16744643 + MIR SINE MIR 19 225 -37 13581 133 133 18 chr4 185585315 185585708 -16742639 + Tigger4(Zombi) DNA MER2_type 2 349 -2382 2330 74 0 7 chr4 185585708 185586005 -16742342 + AluY SINE Alu 1 295 -16 13581 133 133 18 chr4 185586005 185588057 -16740290 + Tigger4(Zombi) DNA MER2_type 349 2727 -4 229 287 93 56 chr4 185588059 185588167 -16740180 - MIR SINE MIR -64 144 33 413 255 55 0 chr4 185589663 185589808 -16738539 + MER103 DNA DNA 14 166 0 185 158 26 0 chr4 185589971 185590009 -16738338 - L2 LINE L2 -685 2629 2591 1180 313 186 25 chr4 185590108 185591029 -16737318 - L2 LINE L2 -728 2586 1518 1623 144 67 0 chr4 185591080 185591398 -16736949 + L1MC/D LINE L1 5436 5720 -624 4202 265 96 28 chr4 185591669 185591811 -16736536 + L1MEc LINE L1 35 166 -6230 232 47 23 23 chr4 185591811 185591854 -16736493 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 4202 265 96 28 chr4 185591854 185592670 -16735677 + L1MEc LINE L1 166 925 -5471 2051 108 3 7 chr4 185592670 185592956 -16735391 + AluSc SINE Alu 24 308 -1 4202 265 96 28 chr4 185592956 185593070 -16735277 + L1MEc LINE L1 925 1030 -5366 2088 128 0 26 chr4 185593070 185593382 -16734965 + AluSx SINE Alu 1 304 -8 4202 265 96 28 chr4 185593382 185594454 -16733893 + L1MEc LINE L1 1030 2326 -4070 1490 252 40 72 chr4 185594618 185595164 -16733183 + L1ME1 LINE L1 5511 6036 -130 2123 108 0 7 chr4 185595164 185595451 -16732896 - AluSc SINE Alu -22 287 3 1490 252 40 72 chr4 185595451 185595532 -16732815 + L1ME1 LINE L1 6036 6118 -48 359 278 23 0 chr4 185595453 185595586 -16732761 + L1MA10 LINE L1 6197 6332 -2 * 764 293 51 16 chr4 185597374 185597688 -16730659 - MER110 LTR ERV1 0 491 167 2253 116 0 3 chr4 185597986 185598289 -16730058 - AluSq SINE Alu -11 302 1 478 270 115 40 chr4 185598499 185598699 -16729648 + MIR SINE MIR 45 259 -3 201 255 117 32 chr4 185599053 185599147 -16729200 + MIR SINE MIR 104 205 -57 25 46 0 46 chr4 185600244 185600309 -16728038 + AT_rich Low_complexity Low_complexity 1 62 0 2858 186 6 0 chr4 185600395 185600938 -16727409 + L1MA6 LINE L1 3434 3979 -2167 * 3324 159 21 36 chr4 185600933 185601042 -16727305 + L1MA6 LINE L1 5355 5464 -836 1766 136 60 78 chr4 185601042 185601424 -16726923 - THE1C LTR MaLR 0 375 1 3324 159 21 36 chr4 185601424 185601987 -16726360 + L1MA6 LINE L1 5464 6017 -283 234 175 0 0 chr4 185602208 185602248 -16726099 + Alu SINE Alu 126 165 -138 1668 93 0 4 chr4 185602248 185602474 -16725873 + AluSp SINE Alu 89 313 0 244 281 18 0 chr4 185602630 185602687 -16725660 - MLT1L LTR MaLR -353 262 205 2416 104 14 3 chr4 185603042 185603399 -16724948 + L1PA13 LINE L1 5798 6158 -5 35 63 0 0 chr4 185604349 185604412 -16723935 + AT_rich Low_complexity Low_complexity 1 63 0 1534 124 9 26 chr4 185605907 185606140 -16722207 + AluSx SINE Alu 1 229 -83 201 39 0 0 chr4 185606161 185606187 -16722160 + (TTAAA)n Simple_repeat Simple_repeat 2 27 0 292 281 0 0 chr4 185606374 185606438 -16721909 - MIR SINE MIR -81 127 64 288 186 17 17 chr4 185606661 185606720 -16721627 + L2 LINE L2 1366 1424 -1890 1212 317 105 22 chr4 185606736 185606816 -16721531 + L2 LINE L2 1858 1930 -1384 1571 183 45 7 chr4 185606816 185606983 -16721364 - AluJb SINE Alu -11 301 117 270 0 0 0 chr4 185606983 185607013 -16721334 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1571 183 45 7 chr4 185607013 185607135 -16721212 - AluJb SINE Alu -195 117 1 1212 317 105 22 chr4 185607135 185607814 -16720533 + L2 LINE L2 1930 2680 -634 1437 292 101 69 chr4 185607831 185609025 -16719322 - L2 LINE L2 -6 3307 2081 23 0 0 0 chr4 185609218 185609241 -16719106 + AT_rich Low_complexity Low_complexity 1 23 0 6854 69 8 0 chr4 185609587 185611079 -16717268 - L1PA8 LINE L1 0 6172 4675 741 127 42 12 chr4 185612886 185613051 -16715296 + CT-rich Low_complexity Low_complexity 1 170 0 1786 176 7 0 chr4 185613051 185613357 -16714990 - AluSx SINE Alu -4 308 1 1004 215 55 21 chr4 185613367 185613697 -16714650 - Charlie5 DNA MER1_type -38 2574 2234 595 197 8 0 chr4 185613706 185613823 -16714524 - Charlie5 DNA MER1_type -2492 120 3 21 0 0 0 chr4 185614240 185614261 -16714086 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr4 185614472 185614507 -16713840 + AT_rich Low_complexity Low_complexity 1 35 0 327 305 76 0 chr4 185614902 185615007 -16713340 - MIR SINE MIR -104 158 46 528 282 85 60 chr4 185615459 185615650 -16712697 + MER115 DNA AcHobo 370 574 -119 2627 136 24 9 chr4 185615650 185616070 -16712277 + MSTB LTR MaLR 1 426 0 528 282 85 60 chr4 185616070 185616194 -16712153 + MER115 DNA AcHobo 574 693 0 2663 94 6 3 chr4 185616993 185617356 -16710991 - THE1B LTR MaLR 0 364 1 189 107 0 0 chr4 185617433 185617461 -16710886 + (TG)n Simple_repeat Simple_repeat 1 28 0 195 188 0 0 chr4 185617461 185617509 -16710838 + GA-rich Low_complexity Low_complexity 2 49 0 23 33 0 0 chr4 185617651 185617681 -16710666 + AT_rich Low_complexity Low_complexity 1 30 0 2390 109 120 5 chr4 185618048 185618432 -16709915 + MSTA LTR MaLR 1 428 0 315 300 27 0 chr4 185618714 185618824 -16709523 + MLT1L LTR MaLR 480 592 -23 410 263 0 0 chr4 185619045 185619144 -16709203 - L1MC/D LINE L1 -2199 5586 5488 422 199 8 71 chr4 185619206 185619358 -16708989 + L1M4 LINE L1 4538 4674 -1472 1151 23 0 0 chr4 185619577 185619709 -16708638 + AluY SINE Alu 170 301 -10 2185 165 44 52 chr4 185620663 185621635 -16706712 - L1MB7 LINE L1 -42 6142 5157 27 29 0 0 chr4 185621976 185622010 -16706337 + AT_rich Low_complexity Low_complexity 1 34 0 2092 109 3 0 chr4 185622274 185622580 -16705767 - AluSp SINE Alu 0 307 1 1336 176 9 56 chr4 185622737 185623077 -16705270 - MER33 DNA MER1_type 0 324 1 185 304 38 13 chr4 185623858 185623937 -16704410 + L2 LINE L2 2174 2254 -1060 198 167 0 0 chr4 185625558 185625594 -16702753 + (TTG)n Simple_repeat Simple_repeat 2 37 0 2322 99 0 6 chr4 185627990 185628304 -16700043 + AluSx SINE Alu 1 312 0 697 289 61 35 chr4 185629073 185629301 -16699046 + MIR SINE MIR 6 239 -23 2390 93 0 6 chr4 185630277 185630588 -16697759 + AluSg1 SINE Alu 1 309 0 27 0 0 0 chr4 185630660 185630687 -16697660 + AT_rich Low_complexity Low_complexity 1 27 0 907 280 70 100 chr4 185631191 185631773 -16696574 - MER21B LTR ERV1 -158 705 141 402 266 7 45 chr4 185631799 185631944 -16696403 - MER77 LTR ERV1 -408 197 21 205 241 48 60 chr4 185632190 185632273 -16696074 - MIR SINE MIR -38 224 143 2175 113 13 7 chr4 185632324 185632633 -16695714 + AluSx SINE Alu 1 311 -1 1061 247 47 26 chr4 185633014 185633479 -16694868 + L1M4c LINE L1 1487 2152 -4232 2625 174 54 24 chr4 185633520 185634117 -16694230 - L1 LINE L1 -1411 4735 4121 * 4147 172 30 16 chr4 185634116 185635190 -16693157 + L1MA7 LINE L1 4982 6068 -223 1884 171 68 64 chr4 185685248 185685682 -16642665 - L1 LINE L1 -1306 4840 4409 189 0 0 0 chr4 185685682 185685703 -16642644 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1884 171 68 64 chr4 185685703 185685720 -16642627 - L1 LINE L1 -1737 4409 4394 1616 187 10 48 chr4 185685720 185686030 -16642317 - AluJb SINE Alu -14 298 1 1884 171 68 64 chr4 185686030 185686074 -16642273 - L1 LINE L1 -1752 4394 4342 525 32 0 0 chr4 185686074 185686137 -16642210 + (TA)n Simple_repeat Simple_repeat 1 63 0 34 0 0 0 chr4 185686207 185686241 -16642106 + AT_rich Low_complexity Low_complexity 1 34 0 1097 181 4 26 chr4 185686241 185686473 -16641874 - L1PA8A LINE L1 -12 6119 5893 7738 16 6 1 chr4 185686574 185687600 -16640747 + L1PA3 LINE L1 5126 6155 0 203 122 0 24 chr4 185687606 185687647 -16640700 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 406 58 0 0 chr4 185687648 185687700 -16640647 + L1PA6 LINE L1 6100 6151 -3 1098 233 47 39 chr4 185687744 185688105 -16640242 + MLT1A1 LTR MaLR 2 365 0 25 31 0 0 chr4 185688309 185688341 -16640006 + AT_rich Low_complexity Low_complexity 1 32 0 42 48 0 0 chr4 185688357 185688420 -16639927 + AT_rich Low_complexity Low_complexity 1 63 0 2113 123 0 13 chr4 185688660 185688962 -16639385 + AluSg SINE Alu 3 300 -10 1493 254 84 31 chr4 185689778 185690142 -16638205 + ERVL-E LTR ERVL 4634 4977 -787 2428 73 0 13 chr4 185690142 185690456 -16637891 + AluY SINE Alu 1 310 -1 1493 254 84 31 chr4 185690456 185690830 -16637517 + ERVL-E LTR ERVL 4977 5433 -331 335 82 0 20 chr4 185691030 185691079 -16637268 - Alu SINE Alu -250 52 5 280 230 11 35 chr4 185691126 185691213 -16637134 + Ricksha DNA DNA 228 311 -1735 1394 247 18 38 chr4 185691238 185691803 -16636544 + MLT2E LTR ERVL 4 628 0 327 298 62 31 chr4 185691806 185691967 -16636380 - L1M4 LINE L1 -2441 3705 3540 44 46 0 0 chr4 185692284 185692349 -16635998 + AT_rich Low_complexity Low_complexity 1 65 0 22 99 0 0 chr4 185692520 185692591 -16635756 + AT_rich Low_complexity Low_complexity 1 71 0 351 275 77 58 chr4 185692724 185692931 -16635416 + HAL1b LINE L1 185 395 -953 2176 108 3 0 chr4 185693302 185693599 -16634748 + AluSg SINE Alu 1 298 -12 26 30 0 0 chr4 185693977 185694010 -16634337 + AT_rich Low_complexity Low_complexity 1 33 0 409 262 32 5 chr4 185695019 185695149 -16633198 + MIR SINE MIR 34 162 -63 24 0 0 0 chr4 185695208 185695232 -16633115 + AT_rich Low_complexity Low_complexity 1 24 0 455 265 23 30 chr4 185695455 185695587 -16632760 - MER5B DNA MER1_type 0 178 48 207 293 135 27 chr4 185695750 185695972 -16632375 + L2 LINE L2 2145 2390 -924 988 225 39 29 chr4 185696149 185696429 -16631918 - LTR52 LTR ERVL -108 313 31 286 266 105 14 chr4 185696794 185696937 -16631410 + L1MEd LINE L1 6 161 -5958 762 247 17 6 chr4 185697036 185697214 -16631133 - MIR SINE MIR -68 194 15 199 195 42 0 chr4 185697393 185697511 -16630836 + (TA)n Simple_repeat Simple_repeat 1 123 0 24 32 0 0 chr4 185697560 185697591 -16630756 + AT_rich Low_complexity Low_complexity 1 31 0 227 170 0 60 chr4 185697737 185697837 -16630510 + (TA)n Simple_repeat Simple_repeat 1 94 0 207 114 0 0 chr4 185697863 185697898 -16630449 + (ATCG)n Simple_repeat Simple_repeat 3 37 0 26 30 0 0 chr4 185698621 185698654 -16629693 + AT_rich Low_complexity Low_complexity 1 33 0 1161 113 31 10 chr4 185698655 185698850 -16629497 - L1PA16 LINE L1 -11 6155 5957 21 36 0 0 chr4 185698874 185698902 -16629445 + AT_rich Low_complexity Low_complexity 1 28 0 424 328 23 6 chr4 185698910 185699087 -16629260 - MIR SINE MIR -15 247 68 1337 159 26 4 chr4 185699197 185699429 -16628918 + AluSg/x SINE Alu 66 302 -10 23 54 0 0 chr4 185699945 185699982 -16628365 + AT_rich Low_complexity Low_complexity 1 37 0 626 239 25 40 chr4 185700023 185700224 -16628123 + L1MA9 LINE L1 6042 6239 -73 2227 75 3 3 chr4 185700239 185700548 -16627799 + AluSg SINE Alu 1 309 0 189 0 0 0 chr4 185700548 185700569 -16627778 + (TTA)n Simple_repeat Simple_repeat 3 23 0 35 54 0 0 chr4 185702037 185702093 -16626254 + AT_rich Low_complexity Low_complexity 1 56 0 23 54 0 0 chr4 185702301 185702338 -16626009 + AT_rich Low_complexity Low_complexity 1 37 0 2830 169 7 31 chr4 185702390 185702945 -16625402 - L1MB1 LINE L1 -29 6160 5619 857 212 5 0 chr4 185702960 185703153 -16625194 - L1MB1 LINE L1 -1008 5138 4945 317 160 40 0 chr4 185703165 185703240 -16625107 - L1MB1 LINE L1 -1295 4851 4774 * 3413 182 84 18 chr4 185703230 185704347 -16624000 - L1M3 LINE L1 -716 5618 4414 189 0 0 0 chr4 185704348 185704369 -16623978 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 729 161 0 25 chr4 185704386 185704504 -16623843 - AluJb SINE Alu -15 297 183 1253 225 14 42 chr4 185704610 185704895 -16623452 - AluJb SINE Alu -31 281 5 525 32 0 0 chr4 185704943 185705006 -16623341 + (TA)n Simple_repeat Simple_repeat 1 63 0 201 108 0 0 chr4 185705077 185705114 -16623233 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 25190 141 14 25 chr4 185705130 185705925 -16622422 - L1PA8A LINE L1 -28 6418 5616 2563 77 0 0 chr4 185705925 185706236 -16622111 + AluY SINE Alu 1 311 0 25190 141 14 25 chr4 185706236 185708341 -16620006 - L1PA8A LINE L1 -830 5616 3489 213 39 0 0 chr4 185708341 185708367 -16619980 + (TG)n Simple_repeat Simple_repeat 1 26 0 25190 141 14 25 chr4 185708367 185709041 -16619306 - L1PA8A LINE L1 -2957 3489 2809 1896 150 0 3 chr4 185709041 185709328 -16619019 - AluSx SINE Alu -26 286 1 25190 141 14 25 chr4 185709328 185712174 -16616173 - L1PA8A LINE L1 -3637 2809 2 710 195 67 18 chr4 185712192 185712296 -16616051 + L1 LINE L1 3509 3625 -2521 1469 216 28 14 chr4 185712296 185712653 -16615694 + MLT1A1 LTR MaLR 4 365 0 710 195 67 18 chr4 185712653 185712712 -16615635 + L1 LINE L1 3625 3680 -2466 2011 189 24 0 chr4 185712714 185713084 -16615263 - MSTB1 LTR MaLR -2 430 52 2789 186 55 10 chr4 185713113 185713732 -16614615 + L1 LINE L1 3675 4321 -1825 21 0 0 0 chr4 185714496 185714517 -16613830 + AT_rich Low_complexity Low_complexity 1 21 0 716 278 62 0 chr4 185714752 185714961 -16613386 + MER58A DNA MER1_type 2 223 -1 22 35 0 0 chr4 185715287 185715316 -16613031 + AT_rich Low_complexity Low_complexity 1 29 0 1005 239 39 54 chr4 185716539 185716874 -16611473 - MLT1A1 LTR MaLR 0 365 36 486 0 0 0 chr4 185717341 185717395 -16610952 + (TA)n Simple_repeat Simple_repeat 2 55 0 243 300 110 0 chr4 185717701 185717801 -16610546 - L2 LINE L2 -3 3310 3200 402 252 26 17 chr4 185719529 185719644 -16608703 + Charlie8 DNA MER1_type 87 202 -2215 36 23 0 0 chr4 185720164 185720207 -16608140 + AT_rich Low_complexity Low_complexity 1 43 0 1831 114 92 4 chr4 185720261 185720542 -16607805 - AluSx SINE Alu -6 306 1 183 42 0 0 chr4 185720626 185720650 -16607697 + (TA)n Simple_repeat Simple_repeat 1 24 0 2106 69 69 0 chr4 185721043 185721333 -16607014 - AluY SINE Alu -1 310 1 294 73 0 0 chr4 185721524 185721565 -16606782 + (CA)n Simple_repeat Simple_repeat 2 42 0 246 212 45 0 chr4 185721687 185721753 -16606594 - L1ME LINE L1 -331 5839 5771 312 335 64 75 chr4 185721806 185722072 -16606275 - L1ME LINE L1 -2087 5721 5459 17390 52 8 3 chr4 185723164 185725816 -16602531 - L1P1 LINE L1 -404 5751 3088 493 240 31 73 chr4 185727484 185727676 -16600671 + LTR33A LTR ERVL 340 523 0 443 266 96 53 chr4 185727804 185728086 -16600261 - L1ME LINE L1 -303 5818 5525 303 276 35 48 chr4 185728091 185728308 -16600039 - L1P4 LINE L1 -718 5450 5237 2232 66 52 0 chr4 185728368 185728654 -16599693 - AluY SINE Alu -10 301 1 231 36 0 0 chr4 185728998 185729026 -16599321 + (TG)n Simple_repeat Simple_repeat 2 29 0 2090 131 7 0 chr4 185729781 185730087 -16598260 - AluSx SINE Alu -4 308 1 1650 238 122 25 chr4 185731872 185732430 -16595917 - MLT1E2 LTR MaLR -8 618 7 336 48 0 0 chr4 185732433 185732475 -16595872 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2043 114 4 0 chr4 185732481 185732754 -16595593 - AluSx SINE Alu -35 277 4 22 56 0 0 chr4 185733820 185733856 -16594491 + AT_rich Low_complexity Low_complexity 1 36 0 189 107 0 0 chr4 185734433 185734461 -16593886 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 298 182 0 34 chr4 185734883 185734971 -16593376 + CT-rich Low_complexity Low_complexity 2 86 0 1685 199 10 0 chr4 185734975 185735281 -16593066 - AluJo SINE Alu -3 309 1 2818 3 0 3 chr4 185735921 185736229 -16592118 + AluYa5 SINE Alu 1 307 -4 2102 212 34 22 chr4 185736667 185737166 -16591181 + MLT1D LTR MaLR 1 505 0 1509 158 8 14 chr4 185738854 185739283 -16589064 + L1MB1 LINE L1 5117 5543 -743 1599 172 38 11 chr4 185739289 185739613 -16588734 - MER61B LTR ERV1 0 425 1 2321 148 10 8 chr4 185739613 185739998 -16588349 + L1MB1 LINE L1 5552 5937 -252 541 108 0 0 chr4 185740038 185740121 -16588226 - GSAT Satellite centromeric -38 179 97 783 176 136 0 chr4 185740129 185740305 -16588042 + L1MB1 LINE L1 5962 6161 -28 207 0 0 0 chr4 185741362 185741385 -16586962 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 3877 108 3 20 chr4 185741509 185742122 -16586225 - L1MA3 LINE L1 0 6305 5703 1842 149 46 35 chr4 185742128 185742498 -16585849 - THE1C LTR MaLR -1 374 1 10370 115 34 16 chr4 185742498 185744049 -16584298 - THE1C-int LTR MaLR 0 1580 2 2130 125 26 32 chr4 185744050 185744427 -16583920 - THE1C LTR MaLR 0 375 1 258 233 0 56 chr4 185746317 185746407 -16581940 + HsTC2 DNA Tc2 3 87 -1811 748 75 19 0 chr4 185746598 185746705 -16581642 - L1PA13 LINE L1 -13 6150 6042 180 0 0 0 chr4 185746931 185746951 -16581396 + (T)n Simple_repeat Simple_repeat 1 20 0 390 264 0 0 chr4 185747306 185747397 -16580950 + L1ME3 LINE L1 6060 6150 -12 1129 210 56 8 chr4 185747777 185748029 -16580318 + MER93b LTR ERV1 1 264 -109 440 293 114 69 chr4 185748227 185748903 -16579444 + L1MEd LINE L1 681 1418 -4892 1563 116 14 196 chr4 185748905 185749318 -16579029 + MER47A DNA MER2_type 28 365 -1 248 284 64 45 chr4 185749620 185749884 -16578463 + L1MEd LINE L1 2113 2381 -3748 195 98 78 0 chr4 185750594 185750645 -16577702 + A-rich Low_complexity Low_complexity 1 55 0 503 261 170 29 chr4 185751908 185752149 -16576198 + LTR50 LTR ERVL 1 275 -520 327 345 29 7 chr4 185752211 185752350 -16575997 + LTR50 LTR ERVL 404 545 -250 609 52 0 0 chr4 185752355 185752432 -16575915 + (TTTTC)n Simple_repeat Simple_repeat 4 80 0 2085 137 0 3 chr4 185752446 185752759 -16575588 - AluSq SINE Alu -1 312 1 447 197 206 63 chr4 185752759 185752922 -16575425 + LTR50 LTR ERVL 541 746 -49 2235 92 3 3 chr4 185752922 185753215 -16575132 - AluSx SINE Alu -19 293 1 447 197 206 63 chr4 185753215 185753274 -16575073 + LTR50 LTR ERVL 746 795 0 22 0 0 0 chr4 185753649 185753671 -16574676 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 185753758 185753786 -16574561 + AT_rich Low_complexity Low_complexity 1 28 0 1079 188 56 38 chr4 185753950 185754237 -16574110 - L1MA9 LINE L1 -1 6311 6020 1228 204 0 9 chr4 185754552 185754773 -16573574 + AluJb SINE Alu 72 290 -22 2597 234 45 18 chr4 185755028 185755698 -16572649 - MER76 LTR ERV 0 688 1 394 286 103 39 chr4 185756454 185757039 -16571308 + L1MCa LINE L1 1087 1708 -4718 26 30 0 0 chr4 185757084 185757117 -16571230 + AT_rich Low_complexity Low_complexity 1 33 0 300 283 83 47 chr4 185757177 185757538 -16570809 + L1MCa LINE L1 2129 2502 -4105 29 47 0 0 chr4 185757606 185757649 -16570698 + AT_rich Low_complexity Low_complexity 1 43 0 521 284 71 0 chr4 185757654 185757823 -16570524 + HERVL40 LTR ERVL 1329 1509 -4021 3249 292 28 18 chr4 185757920 185759186 -16569161 + HERVL40 LTR ERVL 2054 3360 -2170 753 329 31 11 chr4 185759459 185759815 -16568532 + MER89-int LTR ERV1 6122 6484 -317 * 1235 207 55 4 chr4 185759773 185760044 -16568303 + HERVL40 LTR ERVL 5246 5530 0 1585 234 63 16 chr4 185760044 185760485 -16567862 + LTR40b LTR ERVL 1 462 0 278 276 67 112 chr4 185760868 185761002 -16567345 + L1ME1 LINE L1 321 448 -5622 495 240 0 0 chr4 185761474 185761599 -16566748 - L1MCa LINE L1 -3812 2614 2490 630 145 8 15 chr4 185761604 185761735 -16566612 - L1MA4 LINE L1 -6 6294 6165 1079 184 43 30 chr4 185761739 185761972 -16566375 + L1MA4 LINE L1 5623 5858 -442 2318 241 63 19 chr4 185761992 185762784 -16565563 - L1MCa LINE L1 -4092 2515 1508 2451 221 95 79 chr4 185762795 185764737 -16563610 + L1ME1 LINE L1 4046 6024 -76 201 175 0 25 chr4 185764737 185764777 -16563570 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 757 192 93 75 chr4 185765074 185765288 -16563059 + MER20 DNA MER1_type 2 219 0 22 0 0 0 chr4 185765312 185765334 -16563013 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 185767147 185767171 -16561176 + AT_rich Low_complexity Low_complexity 1 24 0 447 285 97 16 chr4 185767208 185767394 -16560953 - MIR SINE MIR -10 252 52 313 168 0 16 chr4 185767580 185767680 -16560667 + MSTD LTR MaLR 4 158 -238 897 173 0 0 chr4 185767708 185767864 -16560483 + MSTD LTR MaLR 241 396 0 681 261 9 75 chr4 185769313 185769539 -16558808 - MIR SINE MIR -27 235 25 369 352 72 53 chr4 185769617 185769935 -16558412 - L1MCa LINE L1 -5725 691 368 22 35 0 0 chr4 185769967 185769996 -16558351 + AT_rich Low_complexity Low_complexity 1 29 0 1666 185 11 0 chr4 185770081 185770367 -16557980 - AluJo SINE Alu -16 296 8 2296 160 3 0 chr4 185770613 185770987 -16557360 - L1PA16 LINE L1 -9 6157 5783 7877 251 17 20 chr4 185770987 185771279 -16557068 + L1P LINE L1 1900 2191 -3955 2195 117 3 0 chr4 185771279 185771587 -16556760 + AluSx SINE Alu 1 309 -3 7877 251 17 20 chr4 185771587 185773630 -16554717 + L1P LINE L1 2191 4227 -1919 506 345 92 37 chr4 185774192 185774789 -16553558 + L1MEd LINE L1 409 1038 -5167 569 300 83 22 chr4 185774893 185775303 -16553044 + L1MEd LINE L1 1263 1697 -4699 666 272 61 5 chr4 185775425 185775638 -16552709 + MIR SINE MIR 10 234 -28 215 107 54 36 chr4 185775667 185775723 -16552624 + (TAA)n Simple_repeat Simple_repeat 2 58 0 801 299 156 3 chr4 185775932 185776310 -16552037 + LTR33A LTR ERVL 87 522 -1 26 0 0 0 chr4 185776354 185776380 -16551967 + AT_rich Low_complexity Low_complexity 1 26 0 691 119 16 16 chr4 185776484 185776610 -16551737 + CT-rich Low_complexity Low_complexity 3 128 0 296 236 153 0 chr4 185777877 185777949 -16550398 - Tigger5 DNA MER2_type -1 2322 2240 453 187 0 33 chr4 185777963 185778054 -16550293 + Tigger5 DNA MER2_type 1 88 -2235 288 200 62 15 chr4 185778076 185778141 -16550206 - Tigger5 DNA MER2_type -5 2318 2251 198 333 118 46 chr4 185778180 185778333 -16550014 - MIR3 SINE MIR -3 205 42 456 268 144 7 chr4 185778339 185778492 -16549855 + MER5A DNA MER1_type 10 183 -6 211 250 0 0 chr4 185778970 185779014 -16549333 + L2 LINE L2 3266 3309 -4 248 191 0 0 chr4 185779349 185779396 -16548951 + MLT1A2 LTR MaLR 328 374 0 3858 179 89 80 chr4 185779396 185780462 -16547885 + MLT1A2-int LTR MaLR 1 1076 -659 765 367 83 21 chr4 185780463 185781755 -16546592 - ERVL LTR ERVL -2404 3360 1916 396 328 106 35 chr4 185782062 185782403 -16545944 - ERVL LTR ERVL -3531 1465 1101 272 137 20 0 chr4 185782419 185782470 -16545877 + C-rich Low_complexity Low_complexity 4 55 0 1731 184 10 3 chr4 185782479 185782899 -16545448 - AluJo SINE Alu -6 306 1 633 338 75 22 chr4 185782899 185783260 -16545087 - ERVL LTR ERVL -3889 1107 728 1450 212 90 14 chr4 185784058 185784426 -16543921 - MSTD LTR MaLR 0 396 1 6851 212 26 18 chr4 185784951 185787714 -16540633 + L1MB2 LINE L1 3380 6170 -1 307 243 35 49 chr4 185788116 185788260 -16540087 - LTR33 LTR ERVL -379 142 1 487 363 110 29 chr4 185788265 185788905 -16539442 + L2 LINE L2 2625 3311 -2 306 0 0 0 chr4 185789727 185789761 -16538586 + (TC)n Simple_repeat Simple_repeat 2 35 0 225 65 0 0 chr4 185789760 185789791 -16538556 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 2406 96 0 10 chr4 185790448 185790761 -16537586 - AluSg SINE Alu 0 310 1 2084 110 0 0 chr4 185790848 185791121 -16537226 + AluSx SINE Alu 1 273 -39 213 39 0 0 chr4 185791131 185791157 -16537190 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 1054 224 80 113 chr4 185791567 185792045 -16536302 - LTR40b LTR ERVL 0 462 1 2232 116 3 0 chr4 185792077 185792380 -16535967 + AluSx SINE Alu 1 304 -8 2369 86 3 0 chr4 185792493 185792796 -16535551 - AluY SINE Alu -7 304 1 647 112 0 0 chr4 185793194 185793292 -16535055 - MER41A LTR ERV1 -11 543 446 830 124 0 0 chr4 185793292 185793413 -16534934 + AluSg/x SINE Alu 182 302 -8 3080 122 31 6 chr4 185793413 185793922 -16534425 - MER41B LTR ERV1 -113 522 1 259 196 0 18 chr4 185793926 185793982 -16534365 - MLT1E3 LTR MaLR -569 55 1 227 276 0 11 chr4 185845047 185845134 -16483213 - L1MC4 LINE L1 -1339 6703 6618 206 114 0 45 chr4 185845284 185845328 -16483019 + (TATG)n Simple_repeat Simple_repeat 3 44 0 242 36 0 0 chr4 185845779 185845807 -16482540 + (A)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr4 185845965 185845987 -16482360 + AT_rich Low_complexity Low_complexity 1 22 0 459 250 105 19 chr4 185847989 185848217 -16480130 + MIR SINE MIR 16 259 -3 24 32 0 0 chr4 185848419 185848450 -16479897 + AT_rich Low_complexity Low_complexity 1 31 0 4690 111 48 28 chr4 185848672 185849422 -16478925 + L1PB2 LINE L1 5170 5948 -203 2522 118 8 0 chr4 185849422 185849794 -16478553 - THE1C LTR MaLR 0 375 1 4690 111 48 28 chr4 185849794 185849891 -16478456 + L1PB2 LINE L1 5948 6042 -109 419 88 0 0 chr4 185849891 185849948 -16478399 - THE1C LTR MaLR -318 57 1 1360 119 5 0 chr4 185849948 185850149 -16478198 + L1PB2 LINE L1 5946 6147 -4 215 229 43 0 chr4 185850738 185850808 -16477539 + A-rich Low_complexity Low_complexity 1 73 0 241 298 81 16 chr4 185852078 185852202 -16476145 + L2 LINE L2 2511 2642 -672 639 152 3 8 chr4 185852230 185852348 -16475999 - LTR12 LTR ERV1 0 714 615 2097 98 3 3 chr4 185852357 185852654 -16475693 + AluY SINE Alu 1 297 -14 348 187 44 22 chr4 185852661 185852752 -16475595 - LTR30 LTR ERV1 -79 643 551 865 168 32 104 chr4 185852752 185853002 -16475345 - LTR12 LTR ERV1 -430 284 53 243 269 0 0 chr4 185853002 185853054 -16475293 - LTR30 LTR ERV1 -670 52 1 200 345 84 25 chr4 185853116 185853235 -16475112 + L2 LINE L2 3139 3264 -8 182 236 22 112 chr4 185853493 185853582 -16474765 - MIR SINE MIR -167 95 15 412 219 29 29 chr4 185854851 185854956 -16473391 - MLT1I LTR MaLR 0 409 305 2009 136 3 3 chr4 185855850 185856160 -16472187 - AluY SINE Alu -1 310 1 1903 109 71 0 chr4 185856491 185856774 -16471573 + AluSp SINE Alu 1 303 -10 26 50 0 0 chr4 185856838 185856878 -16471469 + AT_rich Low_complexity Low_complexity 1 40 0 1945 118 36 0 chr4 185857492 185857771 -16470576 - AluSc SINE Alu -20 289 1 3123 11 0 0 chr4 185858524 185858882 -16469465 - L1PA2 LINE L1 0 6155 5798 23 33 0 0 chr4 185858972 185859002 -16469345 + AT_rich Low_complexity Low_complexity 1 30 0 212 368 97 13 chr4 185859327 185859555 -16468792 - MIR SINE MIR -1 261 15 440 302 112 0 chr4 185859819 185860024 -16468323 + L1ME3A LINE L1 5938 6165 -5 2161 181 213 104 chr4 185861044 185861964 -16466383 - LTR28 LTR ERV1 0 1020 1 21 0 0 0 chr4 185862197 185862218 -16466129 + AT_rich Low_complexity Low_complexity 1 21 0 2006 120 4 0 chr4 185862747 185863021 -16465326 - AluSq SINE Alu -38 275 1 220 174 14 14 chr4 185864362 185864431 -16463916 + (TA)n Simple_repeat Simple_repeat 2 70 0 24 0 0 0 chr4 185864889 185864913 -16463434 + AT_rich Low_complexity Low_complexity 1 24 0 1692 143 15 0 chr4 185865123 185865389 -16462958 - AluSq SINE Alu -7 306 37 548 205 45 0 chr4 185865906 185866018 -16462329 + MIR SINE MIR 122 238 -24 199 194 28 0 chr4 185865987 185866023 -16462324 + L2 LINE L2 3212 3248 -24 * 582 352 113 45 chr4 185866080 185867072 -16461275 - L2 LINE L2 -535 2779 1721 1030 258 50 0 chr4 185867213 185867515 -16460832 + Charlie1b DNA MER1_type 7 323 -200 548 239 97 0 chr4 185867583 185867717 -16460630 - FAM SINE Alu -26 159 13 288 175 111 135 chr4 185867730 185867796 -16460551 + Charlie1b DNA MER1_type 394 457 -2304 2276 89 3 0 chr4 185867796 185868089 -16460258 - AluY SINE Alu -17 294 1 288 175 111 135 chr4 185868089 185868148 -16460199 + Charlie1b DNA MER1_type 457 516 -7 628 311 202 39 chr4 185869148 185869995 -16458352 + L2 LINE L2 2296 3308 -5 2138 114 0 7 chr4 185870487 185870776 -16457571 + AluSx SINE Alu 1 287 -25 448 45 65 45 chr4 185870865 185871019 -16457328 + (TA)n Simple_repeat Simple_repeat 1 157 0 1414 226 44 10 chr4 185871359 185871771 -16456576 + L1MEc LINE L1 2018 2443 -3953 323 232 54 18 chr4 185871777 185871889 -16456458 - L1ME LINE L1 -433 5731 5616 813 281 143 16 chr4 185871893 185872445 -16455902 + L1MEc LINE L1 3136 3757 -2458 238 216 0 0 chr4 185872446 185872497 -16455850 + (TA)n Simple_repeat Simple_repeat 1 51 0 22 35 0 0 chr4 185872681 185872710 -16455637 + AT_rich Low_complexity Low_complexity 1 29 0 529 271 59 35 chr4 185873340 185873543 -16454804 - MIR SINE MIR -13 249 42 437 301 81 49 chr4 185875240 185875625 -16452722 - L1M4 LINE L1 -2065 4081 3685 24 32 0 0 chr4 185876621 185876652 -16451695 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 185876747 185876770 -16451577 + AT_rich Low_complexity Low_complexity 1 23 0 2154 81 10 14 chr4 185876789 185877086 -16451261 + AluY SINE Alu 1 296 -15 740 178 205 5 chr4 185877112 185877297 -16451050 - AluJb SINE Alu -4 308 87 1656 75 4 0 chr4 185877309 185877537 -16450810 - L1MA3 LINE L1 0 6305 6077 232 232 91 20 chr4 185879763 185879862 -16448485 + L1MC4 LINE L1 6595 6700 -1342 * 241 184 15 0 chr4 185879814 185879881 -16448466 - L1MC4 LINE L1 -1336 6986 2007 32 26 0 0 chr4 185879938 185879977 -16448370 + AT_rich Low_complexity Low_complexity 1 39 0 636 299 122 55 chr4 185882318 185882806 -16445541 - L2 LINE L2 0 3313 2772 2161 110 0 0 chr4 185883391 185883690 -16444657 - AluSg SINE Alu -11 299 1 1113 227 45 7 chr4 185883710 185883979 -16444368 + AluJo SINE Alu 22 300 -12 21 0 0 0 chr4 185884129 185884150 -16444197 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr4 185885370 185885400 -16442947 + (T)n Simple_repeat Simple_repeat 1 30 0 206 114 0 45 chr4 185885851 185885895 -16442452 + (CATA)n Simple_repeat Simple_repeat 3 44 0 314 279 0 12 chr4 185886045 185886131 -16442216 + L1MC4 LINE L1 6618 6702 -1340 646 305 85 40 chr4 185886538 185886915 -16441432 + L1M4c LINE L1 175 568 -5745 248 240 0 0 chr4 185887140 185887190 -16441157 - L1 LINE L1 -3861 2285 2236 1319 25 0 0 chr4 185887191 185887348 -16440999 + L1PA4 LINE L1 5997 6153 -2 22 0 0 0 chr4 185887355 185887377 -16440970 + AT_rich Low_complexity Low_complexity 1 22 0 3466 198 37 4 chr4 185887433 185888996 -16439351 + L1M4c LINE L1 2083 3825 -2557 2285 62 0 0 chr4 185888996 185889284 -16439063 + L1PA7 LINE L1 5866 6153 -1 3466 198 37 4 chr4 185889284 185889674 -16438673 + L1M4c LINE L1 3825 4201 -2181 1607 169 13 42 chr4 185890555 185890863 -16437484 + AluJb SINE Alu 1 299 -13 23 0 0 0 chr4 185891011 185891034 -16437313 + AT_rich Low_complexity Low_complexity 1 23 0 305 211 0 0 chr4 185891059 185891116 -16437231 - L2 LINE L2 0 3313 3257 23 0 0 0 chr4 185891718 185891741 -16436606 + AT_rich Low_complexity Low_complexity 1 23 0 1769 122 29 19 chr4 185892320 185892631 -16435716 + L1MA7 LINE L1 5978 6291 0 260 279 0 0 chr4 185892890 185892958 -16435389 - L1ME LINE L1 -440 5681 5614 753 343 60 18 chr4 185893763 185894212 -16434135 + HERV16 LTR ERVL 20 487 -4509 1264 316 81 66 chr4 185895052 185896438 -16431909 + HERV16 LTR ERVL 884 2390 -3374 24 0 0 0 chr4 185896459 185896483 -16431864 + AT_rich Low_complexity Low_complexity 1 24 0 438 263 101 48 chr4 185896756 185896984 -16431363 + HAL1 LINE L1 812 1051 -1456 2070 124 24 0 chr4 185897020 185897318 -16431029 - AluSx SINE Alu -7 305 1 236 367 33 13 chr4 185897320 185897470 -16430877 + MLT1J LTR MaLR 16 168 -343 2395 106 19 32 chr4 185897470 185897839 -16430508 - THE1B LTR MaLR 0 364 1 8911 104 152 0 chr4 185897840 185899192 -16429155 - THE1B-int LTR MaLR -1 1579 23 951 88 36 15 chr4 185899192 185899329 -16429018 - THE1B LTR MaLR -224 140 1 300 381 72 0 chr4 185899329 185899523 -16428824 + MLT1J LTR MaLR 164 371 -140 305 89 0 0 chr4 185899605 185899650 -16428697 + MADE1 DNA Mariner 36 80 0 1223 164 34 57 chr4 185899672 185899934 -16428413 - AluJo SINE Alu -14 298 43 377 280 70 74 chr4 185899937 185900180 -16428167 + HAL1 LINE L1 1042 1283 -1224 293 291 116 37 chr4 185900370 185900611 -16427736 + HAL1 LINE L1 1549 1808 -699 1562 192 18 40 chr4 185900965 185901339 -16427008 + MER39 LTR ERV1 32 523 -184 2281 123 6 33 chr4 185901339 185901705 -16426642 - THE1B LTR MaLR -8 356 1 2994 156 72 10 chr4 185901707 185902219 -16426128 + MER21B LTR ERV1 320 863 0 642 275 50 30 chr4 185903091 185903291 -16425056 + MIR SINE MIR 58 261 -1 216 250 0 0 chr4 185903444 185903496 -16424851 + GA-rich Low_complexity Low_complexity 3 54 0 25 31 0 0 chr4 185903496 185903528 -16424819 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr4 185904708 185904736 -16423611 + AT_rich Low_complexity Low_complexity 1 28 0 204 67 0 0 chr4 185905265 185905295 -16423052 + (CA)n Simple_repeat Simple_repeat 1 30 0 358 287 31 23 chr4 185905370 185905499 -16422848 + MER94 DNA DNA 5 134 0 2263 127 0 0 chr4 185906624 185906932 -16421415 + AluSx SINE Alu 5 312 0 2196 195 28 6 chr4 185907097 185907599 -16420748 + L1MDa LINE L1 1779 2291 -4249 * 2475 214 30 95 chr4 185907590 185908330 -16420017 + L1MD2 LINE L1 5551 6242 0 23 0 0 0 chr4 185908751 185908774 -16419573 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr4 185909749 185909778 -16418569 + AT_rich Low_complexity Low_complexity 1 29 0 221 254 16 16 chr4 185910438 185910560 -16417787 + CT-rich Low_complexity Low_complexity 1 122 0 716 307 30 82 chr4 185911149 185911673 -16416674 + L2 LINE L2 2817 3313 0 1029 268 54 43 chr4 185911939 185912380 -16415967 + MLT1J2 LTR MaLR 3 448 -2 203 282 14 56 chr4 185913625 185913696 -16414651 + L2 LINE L2 3205 3272 0 6832 229 14 16 chr4 185914710 185916303 -16412044 - L1M2 LINE L1 -4189 2660 1070 1199 315 54 16 chr4 185916689 185917117 -16411230 - L1M2 LINE L1 -6404 445 2 23 33 0 0 chr4 185917480 185917510 -16410837 + AT_rich Low_complexity Low_complexity 1 30 0 424 356 98 30 chr4 185917773 185918200 -16410147 - L2 LINE L2 -33 3280 2825 3391 138 27 0 chr4 185919738 185920259 -16408088 + L1P LINE L1 2 536 -5610 2641 65 3 0 chr4 185920259 185920623 -16407724 + L1PA5 LINE L1 5802 6166 0 6070 91 7 7 chr4 185920859 185921224 -16407123 + L1PA8A LINE L1 4805 5169 -962 438 69 0 0 chr4 185921224 185921282 -16407065 + (CA)n Simple_repeat Simple_repeat 1 58 0 6070 91 7 7 chr4 185921282 185922231 -16406116 + L1PA8A LINE L1 5168 6129 -2 1604 204 16 0 chr4 185922592 185922896 -16405451 + AluJb SINE Alu 3 311 -1 1203 142 5 0 chr4 185923180 185923377 -16404970 + L1PBa LINE L1 3 200 -6663 11637 104 110 12 chr4 185923377 185925264 -16403083 + L1PBa LINE L1 634 2704 -4159 6204 144 56 30 chr4 185925435 185926635 -16401712 - Tigger3b DNA MER2_type 0 1231 1 1329 243 60 25 chr4 185927197 185927357 -16400990 + HAL1b LINE L1 839 992 -750 1996 142 16 48 chr4 185927357 185927731 -16400616 + THE1B LTR MaLR 1 362 -2 11619 92 8 4 chr4 185927732 185929307 -16399040 + THE1B-int LTR MaLR 1 1580 0 1795 150 8 59 chr4 185929307 185929681 -16398666 + THE1A LTR MaLR 1 355 0 1329 243 60 25 chr4 185929681 185930063 -16398284 + HAL1b LINE L1 991 1019 -723 1051 231 72 35 chr4 185930051 185930810 -16397537 + L1ME LINE L1 2481 5795 -745 * 277 231 74 37 chr4 185931331 185931439 -16396908 + L1ME LINE L1 5878 5989 -526 343 327 71 24 chr4 185931507 185931675 -16396672 - MIR SINE MIR -28 234 59 2128 143 0 0 chr4 185932172 185932480 -16395867 - AluSx SINE Alu -4 308 1 406 246 99 6 chr4 185933252 185933426 -16394921 + L1ME2 LINE L1 2246 2437 -3709 1129 198 141 12 chr4 185933560 185933893 -16394454 - L1MB8 LINE L1 -1 6177 5802 2203 265 109 42 chr4 185933970 185936343 -16392004 + L1M3a LINE L1 811 3026 -3356 2279 92 0 0 chr4 185936343 185936635 -16391712 + AluSg SINE Alu 14 305 -5 2203 265 109 42 chr4 185936635 185936854 -16391493 + L1M3a LINE L1 3026 3229 -3153 * 4095 186 18 50 chr4 185936853 185937668 -16390679 + L1MA9 LINE L1 5346 6125 -187 1679 181 7 7 chr4 185937668 185937977 -16390370 + AluSx SINE Alu 1 309 -3 4095 186 18 50 chr4 185937977 185938160 -16390187 + L1MA9 LINE L1 6125 6312 0 240 331 46 0 chr4 185938272 185938402 -16389945 - L1MB8 LINE L1 -302 5819 5684 271 218 38 0 chr4 185938772 185938861 -16389486 - L1M4 LINE L1 -1878 4268 4176 2038 159 95 33 chr4 185938948 185939339 -16389008 + MSTB LTR MaLR 14 426 0 43 0 0 0 chr4 185939546 185939589 -16388758 + AT_rich Low_complexity Low_complexity 1 43 0 2350 54 0 63 chr4 185939762 185940079 -16388268 + AluY SINE Alu 1 297 -14 960 262 62 20 chr4 185940904 185941392 -16386955 + L1ME2 LINE L1 2535 3042 -3104 25 51 0 0 chr4 185941520 185941559 -16386788 + AT_rich Low_complexity Low_complexity 1 39 0 382 322 23 17 chr4 185942094 185942268 -16386079 + L1MB2 LINE L1 1088 1262 -5041 3200 247 82 45 chr4 185942273 185943577 -16384770 + L1MB2 LINE L1 1485 2923 -3459 2370 51 17 0 chr4 185943577 185943871 -16384476 + AluY SINE Alu 1 299 -12 3200 247 82 45 chr4 185943871 185944660 -16383687 + L1MB2 LINE L1 2923 3681 -2701 563 93 0 0 chr4 185944674 185944749 -16383598 + AluSg1 SINE Alu 21 95 -214 3358 202 16 8 chr4 185944749 185945488 -16382859 + L1MB2 LINE L1 5663 6407 0 21 0 0 0 chr4 185945580 185945601 -16382746 + AT_rich Low_complexity Low_complexity 1 21 0 3309 265 42 25 chr4 185945656 185946547 -16381800 + L1PA15 LINE L1 1 906 -5881 9711 195 26 7 chr4 185946610 185950131 -16378216 + L1PA15 LINE L1 1440 6280 -536 2288 108 7 0 chr4 185950131 185950438 -16377909 + AluSc SINE Alu 1 309 0 9711 195 26 7 chr4 185950438 185950979 -16377368 + L1PA15 LINE L1 6280 6809 -7 319 234 82 18 chr4 185950960 185951131 -16377216 + L1ME2 LINE L1 3153 3334 -2812 * 3138 174 62 5 chr4 185951141 185951768 -16376579 + L1MC1 LINE L1 5671 6333 0 1020 138 19 0 chr4 185951779 185951939 -16376408 + FRAM SINE Alu 5 167 -9 1074 138 55 0 chr4 185951944 185952125 -16376222 + L1PA11 LINE L1 5968 6158 -16 1291 275 101 39 chr4 185952288 185953459 -16374888 + L1ME2 LINE L1 4423 5653 -509 367 317 24 24 chr4 185953499 185953666 -16374681 + L1ME2 LINE L1 5917 6083 -81 188 324 65 37 chr4 185954227 185954335 -16374012 + MIR3 SINE MIR 84 194 -14 186 43 0 0 chr4 185954713 185954736 -16373611 + (A)n Simple_repeat Simple_repeat 1 23 0 34 0 0 0 chr4 185954833 185954867 -16373480 + AT_rich Low_complexity Low_complexity 1 34 0 2029 120 0 17 chr4 185954925 185955225 -16373122 - AluSx SINE Alu -13 299 5 1006 176 206 47 chr4 185955293 185955589 -16372758 - MLT1A1 LTR MaLR -13 352 10 495 169 0 0 chr4 185956042 185956166 -16372181 + (TA)n Simple_repeat Simple_repeat 2 125 0 1686 256 41 37 chr4 185956508 185957307 -16371040 + L1ME2 LINE L1 2433 3268 -2878 4448 130 32 53 chr4 185957326 185957457 -16370890 + L1PA16 LINE L1 5197 5329 -837 719 200 0 15 chr4 185957457 185957592 -16370755 + FLAM_C SINE Alu 1 133 0 4448 130 32 53 chr4 185957592 185958340 -16370007 + L1PA16 LINE L1 5329 6069 -97 545 208 6 57 chr4 185958335 185958494 -16369853 - L1M4 LINE L1 -2409 3737 3587 * 344 178 0 8 chr4 185958496 185958559 -16369788 + Alu SINE Alu 1 53 -248 472 197 8 68 chr4 185958608 185958725 -16369622 - L1PA16 LINE L1 -87 6079 5970 511 88 75 0 chr4 185958725 185958805 -16369542 + L1PA16 LINE L1 6072 6157 -9 1408 255 36 96 chr4 185958819 185959146 -16369201 + L1ME2 LINE L1 3275 3620 -2526 1603 184 48 10 chr4 185959146 185959440 -16368907 - AluJo SINE Alu -1 311 7 1408 255 36 96 chr4 185959440 185959548 -16368799 + L1ME2 LINE L1 3620 3733 -2413 1771 193 0 3 chr4 185959548 185959853 -16368494 + AluJo SINE Alu 5 308 -4 1408 255 36 96 chr4 185959853 185960141 -16368206 + L1ME2 LINE L1 3733 4037 -2109 2384 90 0 0 chr4 185960141 185960440 -16367907 - AluSq SINE Alu -14 299 1 1408 255 36 96 chr4 185960440 185960873 -16367474 + L1ME2 LINE L1 4037 4345 -1801 1194 247 102 16 chr4 185960872 185961542 -16366805 + L1ME2 LINE L1 4738 5473 -689 * 2013 212 19 50 chr4 185961610 185962086 -16366261 - MLT2B1 LTR ERVL -59 461 1 517 269 21 0 chr4 185962119 185962260 -16366087 + L1ME2 LINE L1 5557 5700 -464 794 102 87 0 chr4 185962310 185962437 -16365910 - L1PA10 LINE L1 -4 6164 6027 1477 218 49 53 chr4 185962518 185962945 -16365402 + L1ME2 LINE L1 5671 6097 -67 1243 211 80 48 chr4 185962945 185963296 -16365051 + MLT1A1 LTR MaLR 4 365 0 1477 218 49 53 chr4 185963296 185963355 -16364992 + L1ME2 LINE L1 6097 6155 -9 421 291 29 44 chr4 185963494 185963700 -16364647 - MIR SINE MIR 0 262 60 1476 266 88 80 chr4 185964803 185966007 -16362340 + L2 LINE L2 2107 3312 -1 435 238 82 16 chr4 185966038 185966160 -16362187 - L2 LINE L2 -3 3269 3140 871 155 15 9 chr4 185966163 185966358 -16361989 + MER2 DNA MER2_type 63 336 -9 429 352 82 69 chr4 185966396 185966537 -16361810 - L2 LINE L2 -425 2889 2751 231 36 0 0 chr4 185966537 185966565 -16361782 + (CA)n Simple_repeat Simple_repeat 1 28 0 429 352 82 69 chr4 185966565 185966948 -16361399 - L2 LINE L2 -563 2751 2358 738 129 50 90 chr4 185967695 185967896 -16360451 + 7SK RNA RNA 1 193 0 21 0 0 0 chr4 185968880 185968901 -16359446 + AT_rich Low_complexity Low_complexity 1 21 0 257 383 62 5 chr4 185969299 185969492 -16358855 + L2 LINE L2 2636 2839 -475 212 86 29 0 chr4 185971086 185971121 -16357226 + (GGGAA)n Simple_repeat Simple_repeat 4 39 0 1212 67 6 11 chr4 185971122 185971300 -16357047 + (GAAA)n Simple_repeat Simple_repeat 1 177 0 973 251 34 66 chr4 185971522 185971961 -16356386 - LTR40c LTR ERVL -16 449 25 854 235 80 0 chr4 185972036 185972236 -16356111 + MIR SINE MIR 27 242 -20 826 259 0 5 chr4 185972310 185972507 -16355840 + MER105 DNA DNA 6 201 -3 2297 106 3 0 chr4 185972518 185972819 -16355528 + AluSq SINE Alu 1 302 -11 305 258 34 22 chr4 185972961 185973050 -16355297 + L2 LINE L2 3183 3272 0 2092 109 0 0 chr4 185973993 185974267 -16354080 + AluSx SINE Alu 21 294 -18 2788 7 0 0 chr4 185974770 185975072 -16353275 - AluYa5 SINE Alu -9 302 1 180 261 29 43 chr4 185975405 185975474 -16352873 - MIR SINE MIR -109 153 86 203 77 0 51 chr4 185975657 185975696 -16352651 + (TCCC)n Simple_repeat Simple_repeat 2 38 0 1772 205 38 7 chr4 185977875 185978299 -16350048 + LTR56 LTR ERV1 9 445 0 4362 118 108 117 chr4 185978603 185980019 -16348328 - pTR5 LTR ERV1 0 2438 743 239 308 128 30 chr4 185980226 185980262 -16348085 + MER5A DNA MER1_type 41 72 -117 2068 137 0 3 chr4 185980262 185980568 -16347779 + AluSx SINE Alu 1 305 -7 239 308 128 30 chr4 185980568 185980664 -16347683 + MER5A DNA MER1_type 72 186 -3 365 266 71 9 chr4 185980889 185981002 -16347345 - MER5A DNA MER1_type -24 165 46 214 302 129 9 chr4 185981114 185981230 -16347117 + MIR SINE MIR 123 252 -10 1592 139 120 12 chr4 185982020 185982279 -16346068 + AluSg SINE Alu 3 289 -21 1921 256 87 48 chr4 185982886 185983831 -16344516 - L1M4c LINE L1 -4663 1721 740 7171 124 19 10 chr4 185983895 185985667 -16342680 - L1MA1 LINE L1 0 6302 4506 3006 86 37 7 chr4 185985673 185986102 -16342245 - MLT2A1 LTR ERVL 0 444 3 534 157 0 0 chr4 185986104 185986187 -16342160 - MSTA LTR MaLR -345 83 1 1181 238 99 50 chr4 185986634 185986687 -16341660 - MLT2B1 LTR ERVL 0 520 471 455 0 18 0 chr4 185986687 185986742 -16341605 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 1181 238 99 50 chr4 185986742 185987184 -16341163 - MLT2B1 LTR ERVL -49 471 1 182 250 25 75 chr4 185987867 185987947 -16340400 + MIR SINE MIR 64 139 -123 800 263 0 6 chr4 185988405 185988584 -16339763 - MER58A DNA MER1_type -36 188 11 410 136 0 0 chr4 185990265 185990324 -16338023 + AluS SINE Alu 1 59 -259 1278 221 58 17 chr4 185990324 185990672 -16337675 - LOR1b LTR ERV1 -25 436 75 439 112 163 31 chr4 185990674 185990772 -16337575 + FRAM SINE Alu 53 163 -13 364 143 43 0 chr4 185990774 185990844 -16337503 - LOR1b LTR ERV1 -388 73 1 259 308 96 10 chr4 185990847 185990951 -16337396 - MIR SINE MIR -116 146 34 322 289 10 0 chr4 185991313 185991417 -16336930 + MIR SINE MIR 124 228 -34 199 318 30 0 chr4 185991465 185991531 -16336816 - L3 LINE CR1 -367 1210 1143 308 237 29 101 chr4 185991630 185991769 -16336578 - MER5A DNA MER1_type -1 188 60 1993 179 0 0 chr4 185991809 185992116 -16336231 + AluJb SINE Alu 3 309 -3 279 264 33 22 chr4 185992144 185992235 -16336112 - L3 LINE CR1 -544 1033 942 1865 146 4 4 chr4 185992346 185992614 -16335733 - AluJb SINE Alu -41 271 4 26 0 0 0 chr4 185992616 185992642 -16335705 + AT_rich Low_complexity Low_complexity 1 26 0 763 216 20 70 chr4 185992953 185993080 -16335267 - MIR SINE MIR -72 190 75 2308 96 7 0 chr4 185993080 185993381 -16334966 + AluSq SINE Alu 1 303 -10 763 216 20 70 chr4 185993381 185993452 -16334895 - MIR SINE MIR -187 75 2 273 320 10 19 chr4 185993706 185993809 -16334538 + MIR SINE MIR 148 249 -13 1192 144 0 0 chr4 185994692 185994880 -16333467 - L1PA15 LINE L1 0 6165 5978 4762 162 19 5 chr4 185994888 185996527 -16331820 - L1PA15 LINE L1 -246 5919 4262 457 312 0 8 chr4 185996523 185996648 -16331699 - L1PA13 LINE L1 -5379 1408 1285 * 24 0 0 0 chr4 185999200 185999224 -16329123 + AT_rich Low_complexity Low_complexity 1 24 0 264 304 62 36 chr4 185999746 185999940 -16328407 + L2 LINE L2 3112 3310 -3 1126 259 79 83 chr4 186000574 186001075 -16327272 + Charlie7 DNA MER1_type 894 1391 -1221 2109 106 14 0 chr4 186001075 186001367 -16326980 - AluSx SINE Alu -16 296 1 1126 259 79 83 chr4 186001367 186001763 -16326584 + Charlie7 DNA MER1_type 1391 1787 -825 1142 170 16 0 chr4 186001778 186002006 -16326341 - AluJo SINE Alu 0 319 89 615 138 0 11 chr4 186002124 186002218 -16326129 - AluJo SINE Alu -219 93 1 356 254 146 48 chr4 186002408 186002571 -16325776 + Charlie7 DNA MER1_type 1977 2123 -489 1641 194 30 17 chr4 186002571 186002870 -16325477 - AluJo SINE Alu -9 303 1 356 254 146 48 chr4 186002870 186003225 -16325122 + Charlie7 DNA MER1_type 2123 2546 -66 1029 194 113 38 chr4 186003236 186003828 -16324519 + LTR48 LTR ERV1 1 786 -1 1395 172 25 11 chr4 186004518 186004797 -16323550 + MER49 LTR ERV1 3 285 -638 2250 90 0 7 chr4 186004851 186005140 -16323207 + AluSc SINE Alu 1 287 -22 1433 195 12 27 chr4 186005142 186005475 -16322872 + MER4D LTR ERV1 568 895 -8 428 191 11 0 chr4 186005765 186005859 -16322488 + GA-rich Low_complexity Low_complexity 3 97 0 2143 185 55 2 chr4 186005920 186006358 -16321989 - LOR1b LTR ERV1 0 461 1 3289 219 74 28 chr4 186006745 186007811 -16320536 + L1MC4a LINE L1 6694 7808 0 180 0 0 0 chr4 186007825 186007845 -16320502 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 358 289 10 10 chr4 186008218 186008322 -16320025 - MIR SINE MIR -154 108 5 23 0 0 0 chr4 186008966 186008989 -16319358 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 186009512 186009540 -16318807 + AT_rich Low_complexity Low_complexity 1 28 0 286 311 59 25 chr4 186009682 186009801 -16318546 + MIR3 SINE MIR 47 169 -39 2110 125 0 7 chr4 186010844 186011131 -16317216 + AluSx SINE Alu 1 285 -27 297 0 0 0 chr4 186011131 186011164 -16317183 + (CA)n Simple_repeat Simple_repeat 2 34 0 1226 162 77 0 chr4 186012074 186012321 -16316026 + MER39B LTR ERV1 1 266 -387 819 238 0 0 chr4 186012382 186012546 -16315801 + FRAM SINE Alu 3 166 0 2162 108 0 17 chr4 186012551 186012846 -16315501 + AluSx SINE Alu 23 312 0 437 254 183 0 chr4 186012846 186013015 -16315332 + MER39B LTR ERV1 261 460 -193 3857 117 105 82 chr4 186013026 186014365 -16313982 - pTR5 LTR ERV1 0 2438 743 1728 97 63 52 chr4 186014365 186014633 -16313714 + AluSx SINE Alu 31 301 -11 873 185 42 42 chr4 186014639 186014877 -16313470 + MER39 LTR ERV1 470 707 0 256 133 33 17 chr4 186015174 186015234 -16313113 + CT-rich Low_complexity Low_complexity 5 65 0 2456 31 0 10 chr4 186017375 186017664 -16310683 + AluY SINE Alu 1 286 -25 29 0 0 0 chr4 186017664 186017693 -16310654 + AT_rich Low_complexity Low_complexity 1 29 0 191 371 0 0 chr4 186017857 186017919 -16310428 + L2 LINE L2 3236 3297 -16 * 254 379 113 21 chr4 186017918 186018354 -16309993 + L2 LINE L2 2521 3084 -188 225 269 33 174 chr4 186018606 186018848 -16309499 + L2 LINE L2 2985 3192 -80 223 227 0 30 chr4 186019181 186019247 -16309100 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 306 229 188 0 chr4 186019247 186019343 -16309004 + MLT1D LTR MaLR 2 115 -390 1546 223 88 0 chr4 186019404 186019780 -16308567 + MLT1D LTR MaLR 90 498 -7 240 149 0 0 chr4 186019781 186019828 -16308519 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 1808 183 3 7 chr4 186019894 186020189 -16308158 + AluJo SINE Alu 2 295 -17 1808 141 35 17 chr4 186020573 186020903 -16307444 + AluSx SINE Alu 3 312 0 22 35 0 0 chr4 186021069 186021098 -16307249 + AT_rich Low_complexity Low_complexity 1 29 0 2945 6 0 0 chr4 186021958 186022276 -16306071 - AluYb8 SINE Alu 0 318 1 25 31 0 0 chr4 186022353 186022385 -16305962 + AT_rich Low_complexity Low_complexity 1 32 0 385 199 61 46 chr4 186022480 186022611 -16305736 + MER103 DNA DNA 10 142 -24 1998 229 46 6 chr4 186022897 186023396 -16304951 - LTR53 LTR ERVL 0 519 1 787 295 76 39 chr4 186023399 186023884 -16304463 + MLT1K LTR MaLR 84 586 -2 1668 180 6 40 chr4 186025120 186025443 -16302904 + AluJo SINE Alu 1 312 0 30 27 0 0 chr4 186025443 186025480 -16302867 + AT_rich Low_complexity Low_complexity 1 37 0 29 28 0 0 chr4 186026636 186026672 -16301675 + AT_rich Low_complexity Low_complexity 1 36 0 1113 191 13 44 chr4 186026765 186026990 -16301357 - AluJo SINE Alu -94 218 1 666 279 6 0 chr4 186027221 186027400 -16300947 + MLT2C2 LTR ERVL 222 401 -63 306 0 0 0 chr4 186027401 186027435 -16300912 + (TG)n Simple_repeat Simple_repeat 2 35 0 1428 222 16 19 chr4 186027435 186027805 -16300542 - MLT1A2 LTR MaLR -5 369 1 282 43 0 8 chr4 186027855 186027899 -16300448 + MLT2B1 LTR ERVL 404 512 -8 2176 105 3 0 chr4 186027988 186028284 -16300063 - AluY SINE Alu -14 297 1 255 308 0 0 chr4 186028694 186028759 -16299588 + L2 LINE L2 3206 3270 -2 370 370 45 0 chr4 186029121 186029275 -16299072 + MIR3 SINE MIR 36 196 -12 2442 91 0 3 chr4 186029683 186029991 -16298356 + AluSc SINE Alu 1 307 -2 215 292 83 25 chr4 186030355 186030475 -16297872 - L2 LINE L2 -202 3070 2944 329 297 97 27 chr4 186030479 186031130 -16297217 + L1ME3 LINE L1 5192 5880 -282 1872 143 3 10 chr4 186031366 186031660 -16296687 + AluJb SINE Alu 1 292 -20 2232 100 3 0 chr4 186033811 186034120 -16294227 - AluSx SINE Alu -2 310 1 192 135 0 0 chr4 186034129 186034166 -16294181 + (A)n Simple_repeat Simple_repeat 1 37 0 1958 134 9 34 chr4 186034252 186034572 -16293775 - AluSx SINE Alu 0 312 1 391 313 80 13 chr4 186034817 186034967 -16293380 + MIR SINE MIR 71 230 -32 184 233 167 33 chr4 186035211 186035301 -16293046 + L2 LINE L2 3199 3300 -13 878 127 0 15 chr4 186035487 186035621 -16292726 - FLAM_C SINE Alu -1 132 1 395 243 57 119 chr4 186037399 186037785 -16290562 + L2 LINE L2 2687 3059 -213 292 202 11 34 chr4 186038026 186038115 -16290232 + (TA)n Simple_repeat Simple_repeat 2 88 0 312 349 37 9 chr4 186038605 186038714 -16289633 - L2 LINE L2 0 3313 3202 902 236 19 10 chr4 186039099 186039307 -16289040 + MIR SINE MIR 53 262 0 1650 198 17 7 chr4 186039325 186039623 -16288724 - AluJo SINE Alu -11 301 1 1063 210 53 33 chr4 186040276 186040630 -16287717 + MSTD LTR MaLR 1 396 0 1075 136 0 0 chr4 186041258 186041434 -16286913 + L1P LINE L1 4143 4318 -1828 23 33 0 0 chr4 186042065 186042095 -16286252 + AT_rich Low_complexity Low_complexity 1 30 0 2287 129 0 0 chr4 186043601 186043912 -16284435 - AluSx SINE Alu -1 311 1 9260 164 10 9 chr4 186043912 186044046 -16284301 - L1PA13 LINE L1 -6 6157 6025 1592 110 0 0 chr4 186044046 186044255 -16284092 - AluSg/x SINE Alu -27 285 77 9260 164 10 9 chr4 186044255 186046679 -16281668 - L1PA13 LINE L1 -138 6025 3661 327 264 104 19 chr4 186047464 186047570 -16280777 + L1MC4 LINE L1 6589 6703 -1339 1355 207 56 0 chr4 186047985 186048270 -16280077 + AluJo SINE Alu 1 301 -11 197 32 0 32 chr4 186048386 186048417 -16279930 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1175 273 104 54 chr4 186048427 186049318 -16279029 + L1MC4 LINE L1 7105 8040 -2 578 349 0 0 chr4 186049438 186049650 -16278697 + ERVL LTR ERVL 1492 1703 -4061 1961 136 85 0 chr4 186050211 186050527 -16277820 + MER61A LTR ERV1 1 343 0 1449 255 52 36 chr4 186050842 186050931 -16277416 + L1M4 LINE L1 4077 4163 -1983 1151 125 6 0 chr4 186050931 186051107 -16277240 + L1PA8 LINE L1 5981 6157 -15 1449 255 52 36 chr4 186051107 186051243 -16277104 + L1M4 LINE L1 4163 4295 -1851 1831 129 35 84 chr4 186051243 186051637 -16276710 - THE1C LTR MaLR 0 375 1 1449 255 52 36 chr4 186051637 186052103 -16276244 + L1M4 LINE L1 4295 4780 -1366 327 292 77 69 chr4 186052548 186052938 -16275409 - L1M2 LINE L1 -5642 1207 815 22 88 0 0 chr4 186053004 186053061 -16275286 + GC_rich Low_complexity Low_complexity 1 57 0 27 49 0 0 chr4 186053157 186053198 -16275149 + GC_rich Low_complexity Low_complexity 1 41 0 357 273 69 71 chr4 186053562 186053948 -16274399 + L2 LINE L2 2687 3059 -213 292 202 11 34 chr4 186054189 186054278 -16274069 + (TA)n Simple_repeat Simple_repeat 2 88 0 302 358 37 9 chr4 186054770 186054879 -16273468 - L2 LINE L2 0 3313 3202 542 290 25 0 chr4 186055264 186055426 -16272921 + MIR SINE MIR 53 218 -44 1822 164 7 0 chr4 186055764 186056068 -16272279 + AluSx SINE Alu 1 306 0 1647 180 103 133 chr4 186056082 186056933 -16271414 + LTR1B LTR ERV1 1 826 0 1105 209 60 55 chr4 186057178 186057579 -16270768 - L1ME2 LINE L1 -91 6073 5671 790 102 87 0 chr4 186057660 186057787 -16270560 + L1PA10 LINE L1 6027 6164 -4 475 269 21 0 chr4 186057837 186057978 -16270369 - L1ME2 LINE L1 -464 5700 5557 1719 220 19 52 chr4 186058011 186058488 -16269859 + MLT2B1 LTR ERVL 1 461 -59 451 251 2 9 chr4 186058557 186058704 -16269643 - L1ME2 LINE L1 -689 5473 5327 305 319 30 36 chr4 186060397 186060563 -16267784 + MIR SINE MIR 36 200 -62 2335 188 38 18 chr4 186061337 186061910 -16266437 + LTR24B LTR ERV1 1 574 -2 4382 127 36 5 chr4 186062283 186062951 -16265396 - LTR8 LTR ERV1 0 691 3 830 221 93 67 chr4 186062983 186063458 -16264889 + LTR1B LTR ERV1 32 1217 -328 252 201 58 149 chr4 186063465 186063639 -16264708 + LTR28 LTR ERV1 848 1005 -15 2307 163 13 0 chr4 186063810 186064208 -16264139 - MER57A LTR ERV1 0 403 1 448 262 20 33 chr4 186064227 186064501 -16263846 - MLT1L LTR MaLR -307 308 4 685 204 74 11 chr4 186064584 186064760 -16263587 - MER58C DNA MER1_type -3 212 26 297 355 41 0 chr4 186064807 186064928 -16263419 - L2 LINE L2 0 3272 3147 411 107 66 8 chr4 186065257 186065378 -16262969 + (TA)n Simple_repeat Simple_repeat 2 129 0 270 306 73 16 chr4 186066417 186066541 -16261806 + MIR SINE MIR 20 150 -112 240 221 29 96 chr4 186066568 186066628 -16261719 - L2 LINE L2 0 3313 3261 4369 163 25 13 chr4 186066628 186067402 -16260945 + LTR39 LTR ERV1 1 783 0 240 221 29 96 chr4 186067402 186067445 -16260902 - L2 LINE L2 -52 3261 3217 1869 125 34 3 chr4 186067522 186067819 -16260528 + AluSg1 SINE Alu 1 306 -3 220 143 0 82 chr4 186068378 186068427 -16259920 - L3b LINE CR1 0 1583 1539 191 136 45 0 chr4 186068457 186068501 -16259846 + A-rich Low_complexity Low_complexity 5 50 0 1933 188 0 0 chr4 186068532 186068841 -16259506 - AluJb SINE Alu -3 309 1 1899 149 7 0 chr4 186069499 186069803 -16258544 + AluSx SINE Alu 1 306 0 2016 163 103 133 chr4 186069817 186070668 -16257679 + LTR1B LTR ERV1 1 826 0 369 313 167 7 chr4 186070930 186071074 -16257273 - MIR SINE MIR -70 192 26 2210 96 7 3 chr4 186071157 186071449 -16256898 - AluSp SINE Alu -20 293 1 2928 193 22 77 chr4 186071496 186071616 -16256731 + Cheshire DNA MER1_type 1607 1732 -688 2023 161 0 7 chr4 186071616 186071926 -16256421 - AluSx SINE Alu 0 312 5 2928 193 22 77 chr4 186071926 186072475 -16255872 + Cheshire DNA MER1_type 1732 2221 -199 1616 191 6 32 chr4 186072475 186072790 -16255557 - AluJo SINE Alu 0 312 6 2928 193 22 77 chr4 186072790 186072979 -16255368 + Cheshire DNA MER1_type 2221 2419 -1 1782 195 27 16 chr4 186073156 186073526 -16254821 + THE1C LTR MaLR 1 374 -1 2329 103 3 0 chr4 186074392 186074692 -16253655 - AluSc SINE Alu -6 303 3 220 297 9 126 chr4 186076424 186076483 -16251864 + MIR SINE MIR 46 88 -120 1291 182 91 57 chr4 186076483 186076779 -16251568 - AluJo SINE Alu -6 306 1 220 297 9 126 chr4 186076779 186076830 -16251517 + MIR SINE MIR 88 143 -65 638 259 51 110 chr4 186077826 186078154 -16250193 + MLT1J LTR MaLR 1 288 -223 1650 207 25 3 chr4 186078154 186078511 -16249836 - MLT1A1 LTR MaLR 0 365 1 638 259 51 110 chr4 186078511 186078711 -16249636 + MLT1J LTR MaLR 288 498 -13 2811 142 34 40 chr4 186078725 186078782 -16249565 + Tigger1 DNA MER2_type 2 58 -2360 935 212 0 0 chr4 186078782 186078947 -16249400 - FRAM SINE Alu 0 166 2 2811 142 34 40 chr4 186078947 186079416 -16248931 + Tigger1 DNA MER2_type 58 525 -1893 10654 139 80 38 chr4 186079713 186080645 -16247702 + Tigger1 DNA MER2_type 205 1096 -1322 2107 109 0 3 chr4 186080645 186080954 -16247393 - AluSx SINE Alu 0 308 1 10654 139 80 38 chr4 186080954 186081536 -16246811 + Tigger1 DNA MER2_type 1096 1652 -766 1793 149 10 14 chr4 186081536 186081825 -16246522 - AluSx SINE Alu -24 288 1 10654 139 80 38 chr4 186081825 186082432 -16245915 + Tigger1 DNA MER2_type 1652 2418 0 307 281 34 41 chr4 186083260 186083406 -16244941 - MER103 DNA DNA -2 164 20 248 177 32 0 chr4 186083921 186083983 -16244364 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 356 325 30 41 chr4 186084295 186084464 -16243883 - MIR3 SINE MIR -21 187 21 425 258 14 44 chr4 186084488 186084711 -16243636 + LTR40b LTR ERVL 187 465 0 2483 48 0 0 chr4 186084809 186085121 -16243226 - LTR17 LTR ERV1 -454 326 15 1313 249 88 38 chr4 186085151 186085204 -16243143 - L1M4 LINE L1 -2576 3570 3521 1558 197 31 17 chr4 186085204 186085493 -16242854 + AluJo SINE Alu 1 293 -19 1313 249 88 38 chr4 186085493 186086286 -16242061 - L1M4 LINE L1 -2625 3521 2681 381 266 62 21 chr4 186087069 186087261 -16241086 + MLT1J LTR MaLR 311 510 -1 315 0 0 0 chr4 186088021 186088056 -16240291 + (CA)n Simple_repeat Simple_repeat 1 35 0 960 148 81 184 chr4 186089434 186089766 -16238581 + AluJo SINE Alu 1 298 -4 2401 79 0 16 chr4 186090348 186090652 -16237695 + AluSq SINE Alu 13 311 -2 572 246 95 32 chr4 186090665 186090950 -16237397 + L1M4 LINE L1 3631 3933 -2213 1316 207 106 62 chr4 186091040 186091523 -16236824 - MER21B LTR ERV1 -52 811 362 419 250 10 10 chr4 186091522 186091622 -16236725 - MER21B LTR ERV1 -637 226 127 * 391 261 37 66 chr4 186091722 186091829 -16236518 + L1M4 LINE L1 4077 4186 -1960 2093 124 3 0 chr4 186091829 186092119 -16236228 + AluSx SINE Alu 1 291 -21 391 261 37 66 chr4 186092119 186092283 -16236064 + L1M4 LINE L1 4186 4340 -1806 676 225 0 0 chr4 186092334 186092454 -16235893 + FLAM_C SINE Alu 1 120 -23 182 0 24 73 chr4 186092454 186092495 -16235852 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 2151 130 7 7 chr4 186092538 186092838 -16235509 + AluSx SINE Alu 3 302 -10 180 0 0 0 chr4 186092876 186092896 -16235451 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1673 174 94 142 chr4 186092943 186093698 -16234649 + LTR8A LTR ERV1 1 719 -8 844 270 33 0 chr4 186093713 186093928 -16234419 + MIR SINE MIR 41 262 0 43 0 0 0 chr4 186093972 186094015 -16234332 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr4 186094088 186094124 -16234223 + AT_rich Low_complexity Low_complexity 1 36 0 329 287 45 42 chr4 186094240 186094529 -16233818 + L1M4 LINE L1 4532 4821 -1325 2118 102 0 60 chr4 186094674 186095029 -16233318 - AluSx SINE Alu 0 312 1 2057 214 8 39 chr4 186095647 186096167 -16232180 - MLT1D LTR MaLR 0 505 2 672 219 171 0 chr4 186096169 186096356 -16231991 - MER20 DNA MER1_type 0 219 1 524 222 81 128 chr4 186097953 186098111 -16230236 + MIR SINE MIR 40 185 -77 1856 147 0 23 chr4 186098111 186098411 -16229936 + AluJo SINE Alu 13 305 -7 524 222 81 128 chr4 186098411 186098486 -16229861 + MIR SINE MIR 185 262 0 224 352 55 8 chr4 186099150 186099278 -16229069 + L2 LINE L2 3134 3267 -5 6709 108 45 66 chr4 186099626 186100655 -16227692 + Tigger3b DNA MER2_type 1 1001 -2027 2440 73 0 3 chr4 186100655 186100958 -16227389 + AluY SINE Alu 1 302 -9 6709 108 45 66 chr4 186100958 186101185 -16227162 + Tigger3b DNA MER2_type 1001 1231 0 1753 81 9 0 chr4 186101707 186101930 -16226417 + AluSc SINE Alu 1 225 -84 1264 114 0 0 chr4 186101930 186102097 -16226250 + AluSg/x SINE Alu 141 307 -3 2115 124 0 13 chr4 186102152 186102451 -16225896 + AluSx SINE Alu 1 295 -17 1947 112 26 0 chr4 186103007 186103275 -16225072 + AluSq SINE Alu 1 275 -38 1545 230 100 30 chr4 186103432 186103901 -16224446 + MLT1F1 LTR MaLR 3 504 -63 2072 153 37 3 chr4 186104142 186104496 -16223851 - MER47A DNA MER2_type 0 366 1 199 351 41 90 chr4 186106643 186106835 -16221512 - L2 LINE L2 -73 3199 3020 2281 113 7 0 chr4 186106835 186107137 -16221210 + AluSp SINE Alu 1 304 -9 199 351 41 90 chr4 186107137 186107189 -16221158 - L2 LINE L2 -252 3020 2967 * 238 345 88 0 chr4 186107188 186107301 -16221046 - L2 LINE L2 -639 2675 2553 513 241 99 43 chr4 186107600 186107762 -16220585 - MIR SINE MIR -87 175 5 2482 51 27 0 chr4 186110237 186110531 -16217816 + AluY SINE Alu 1 302 -9 1536 134 144 7 chr4 186111393 186111691 -16216656 - MER44D DNA MER2_type 0 609 1 182 342 174 26 chr4 186112113 186112268 -16216079 - L2 LINE L2 -5 3267 3090 2030 118 47 0 chr4 186113034 186113331 -16215016 - AluSx SINE Alu -1 311 1 596 308 144 49 chr4 186114041 186114388 -16213959 + L2 LINE L2 2930 3309 -4 1302 112 10 10 chr4 186114900 186115105 -16213242 - L1PB1 LINE L1 -1 6150 5946 2371 50 40 7 chr4 186115908 186116208 -16212139 - AluY SINE Alu -1 310 1 35 41 0 0 chr4 186116862 186116911 -16211436 + AT_rich Low_complexity Low_complexity 1 49 0 372 344 54 36 chr4 186117275 186117554 -16210793 - L1MEd LINE L1 -5831 288 5 342 67 0 0 chr4 186120391 186120436 -16207911 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 3606 223 45 41 chr4 186120764 186122343 -16206004 - L1ME1 LINE L1 -287 5879 4308 1861 130 36 81 chr4 186122343 186122736 -16205611 + THE1C LTR MaLR 1 375 0 3606 223 45 41 chr4 186122736 186122872 -16205475 - L1ME1 LINE L1 -1858 4308 4174 1342 66 0 0 chr4 186122872 186123038 -16205309 - L1PA8 LINE L1 -15 6157 5992 3606 223 45 41 chr4 186123038 186123510 -16204837 - L1ME1 LINE L1 -1992 4174 3628 319 284 60 26 chr4 186123549 186123665 -16204682 + L1MEc LINE L1 1213 1332 -5064 977 256 139 10 chr4 186123713 186124384 -16203963 + L1MCa LINE L1 1272 2235 -4372 329 283 82 30 chr4 186124504 186124737 -16203610 + L1MCa LINE L1 2251 2495 -4112 1613 143 87 14 chr4 186124859 186125183 -16203164 - MER39B LTR ERV1 -271 382 28 5180 95 36 7 chr4 186125183 186125941 -16202406 + LTR17 LTR ERV1 1 780 0 1613 143 87 14 chr4 186125941 186125972 -16202375 - MER39B LTR ERV1 -625 28 1 198 344 91 91 chr4 186126032 186126317 -16202030 + L2 LINE L2 2976 3260 -12 523 24 35 35 chr4 186126624 186126709 -16201638 - L1PA4 LINE L1 0 6155 6071 920 61 9 0 chr4 186126721 186126836 -16201511 - AluSc SINE Alu -192 117 2 2164 147 0 3 chr4 186126836 186127142 -16201205 - AluSx SINE Alu -2 310 6 30 27 0 0 chr4 186127329 186127366 -16200981 + AT_rich Low_complexity Low_complexity 1 37 0 1551 177 4 12 chr4 186127366 186127620 -16200727 - AluJo SINE Alu -55 257 6 2080 123 7 13 chr4 186127877 186128186 -16200161 + AluSc SINE Alu 1 307 -2 308 276 136 35 chr4 186128410 186128609 -16199738 - L2 LINE L2 -399 2915 2697 528 291 73 15 chr4 186128615 186128876 -16199471 - L2 LINE L2 -522 2792 2517 847 169 156 4 chr4 186128883 186129120 -16199227 - MER69 DNA AcHobo -24 2502 2230 920 211 0 0 chr4 186129260 186129445 -16198902 - MER5A DNA MER1_type 0 189 5 458 240 40 13 chr4 186129857 186130007 -16198340 - L2 LINE L2 -789 2525 2372 21 0 0 0 chr4 186130013 186130034 -16198313 + AT_rich Low_complexity Low_complexity 1 21 0 1090 238 52 11 chr4 186130134 186130420 -16197927 - MLT1A1 LTR MaLR -65 300 3 2077 121 37 0 chr4 186130535 186130833 -16197514 + AluSx SINE Alu 1 309 -3 5190 185 78 33 chr4 186131396 186132789 -16195558 - Charlie1a DNA MER1_type 0 1455 1 189 274 0 20 chr4 186132797 186132848 -16195499 + MER5B DNA MER1_type 1 50 -128 339 256 35 0 chr4 186132848 186132934 -16195413 - L1MC4 LINE L1 -1340 6702 6614 400 156 22 0 chr4 186132934 186133024 -16195323 + (CATATA)n Simple_repeat Simple_repeat 4 95 0 596 188 0 10 chr4 186133036 186133137 -16195210 - FLAM_A SINE Alu -41 101 2 2601 46 0 3 chr4 186133163 186133469 -16194878 + AluY SINE Alu 1 305 -6 2338 104 0 3 chr4 186133479 186133786 -16194561 + AluSg SINE Alu 1 306 -4 207 0 0 0 chr4 186133898 186133921 -16194426 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr4 186133928 186133949 -16194398 + GC_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 186134094 186134119 -16194228 + GC_rich Low_complexity Low_complexity 1 25 0 28 48 0 0 chr4 186134169 186134211 -16194136 + GC_rich Low_complexity Low_complexity 1 42 0 306 0 0 0 chr4 186134211 186134245 -16194102 + (A)n Simple_repeat Simple_repeat 1 34 0 446 250 25 33 chr4 186134248 186134368 -16193979 + MER5B DNA MER1_type 60 178 0 2257 105 3 0 chr4 186134530 186134824 -16193523 - AluSx SINE Alu -17 295 1 1300 154 19 77 chr4 186134824 186135084 -16193263 - AluJb SINE Alu -67 245 1 2270 99 0 7 chr4 186135388 186135690 -16192657 + AluSc SINE Alu 1 300 -9 22 0 0 0 chr4 186136408 186136430 -16191917 + AT_rich Low_complexity Low_complexity 1 22 0 257 204 28 19 chr4 186136947 186137055 -16191292 + CT-rich Low_complexity Low_complexity 2 110 0 526 320 57 26 chr4 186137124 186137352 -16190995 - MIR SINE MIR -19 243 9 344 328 55 0 chr4 186138081 186138209 -16190138 + MIR SINE MIR 70 204 -58 226 0 0 0 chr4 186139153 186139178 -16189169 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1247 119 0 0 chr4 186139178 186139346 -16189001 - AluY SINE Alu -1 305 114 1666 108 9 115 chr4 186141153 186141476 -16186871 + AluSg1 SINE Alu 1 289 -20 343 284 45 85 chr4 186141500 186141701 -16186646 + MIR SINE MIR 46 238 -24 282 299 146 22 chr4 186142627 186142764 -16185583 + MIR SINE MIR 59 212 -50 215 317 49 56 chr4 186144126 186144268 -16184079 + L2 LINE L2 2910 3050 -222 606 153 27 0 chr4 186144411 186144522 -16183825 - LTR40b LTR ERVL 0 462 349 1316 251 39 24 chr4 186144622 186145032 -16183315 - LTR40a LTR ERVL -103 416 1 1889 130 37 0 chr4 186145856 186146159 -16182188 + AluSc SINE Alu 1 313 0 336 336 199 7 chr4 186146514 186146800 -16181547 + L2 LINE L2 2973 3313 0 2125 150 38 3 chr4 186147034 186147407 -16180940 - MSTB LTR MaLR 0 426 41 2401 70 0 3 chr4 186147742 186148040 -16180307 + AluY SINE Alu 1 297 -14 1594 188 66 42 chr4 186148977 186149444 -16178903 - LTR2B LTR ERV1 0 490 1 2290 92 0 3 chr4 186149595 186149881 -16178466 + AluSx SINE Alu 1 287 -25 198 0 0 0 chr4 186149881 186149903 -16178444 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 24 32 0 0 chr4 186150393 186150424 -16177923 + AT_rich Low_complexity Low_complexity 1 31 0 2909 176 23 73 chr4 186150541 186151268 -16177079 - LTR8 LTR ERV1 0 691 1 267 114 0 0 chr4 186153026 186153070 -16175277 + (TC)n Simple_repeat Simple_repeat 1 44 0 2372 61 3 3 chr4 186153505 186153799 -16174548 - AluY SINE Alu -17 294 1 2668 235 73 8 chr4 186154048 186154683 -16173664 + L1MEc LINE L1 2264 2952 -3263 2196 123 0 0 chr4 186154683 186154983 -16173364 - AluSx SINE Alu -12 300 1 2668 235 73 8 chr4 186154983 186155356 -16172991 + L1MEc LINE L1 2952 3299 -2916 252 160 0 0 chr4 186155361 186155411 -16172936 + L1MEc LINE L1 3262 3311 -2904 1139 186 98 3 chr4 186155412 186155708 -16172639 - MER33 DNA MER1_type 0 324 1 338 284 19 50 chr4 186155711 186155972 -16172375 + L1MEc LINE L1 3342 3594 -2621 289 237 46 5 chr4 186155989 186156148 -16172199 - L1ME LINE L1 -4695 2167 1561 34 72 0 0 chr4 186156214 186156283 -16172064 + AT_rich Low_complexity Low_complexity 1 69 0 2491 261 36 88 chr4 186156289 186157794 -16170553 - L1ME LINE L1 -4980 1443 17 240 150 0 0 chr4 186158193 186158233 -16170114 - MLT1K LTR MaLR -19 569 530 36 53 0 0 chr4 186159065 186159122 -16169225 + AT_rich Low_complexity Low_complexity 1 57 0 466 230 52 132 chr4 186161220 186161546 -16166801 + L2 LINE L2 3014 3313 0 1949 93 0 73 chr4 186162490 186162791 -16165556 + AluSc SINE Alu 1 279 -30 234 0 0 0 chr4 186162798 186162824 -16165523 + (CA)n Simple_repeat Simple_repeat 1 26 0 1132 234 9 0 chr4 186163088 186163319 -16165028 + MER8 DNA MER2_type 7 239 0 1130 170 58 0 chr4 186163861 186164084 -16164263 - Tigger2a DNA MER2_type -3 441 206 1031 161 6 0 chr4 186164084 186164246 -16164101 + FRAM SINE Alu 1 162 -14 1136 130 35 20 chr4 186164247 186164447 -16163900 - Tigger2a DNA MER2_type -231 203 1 311 142 123 113 chr4 186164997 186165103 -16163244 + MIR SINE MIR 47 153 -109 1599 170 77 6 chr4 186166837 186167148 -16161199 - ERVL LTR ERVL -3553 2211 1879 320 93 0 0 chr4 186167385 186167439 -16160908 + HY1 scRNA scRNA 58 111 -1 26 0 0 0 chr4 186168507 186168533 -16159814 + AT_rich Low_complexity Low_complexity 1 26 0 234 306 0 0 chr4 186168668 186168730 -16159617 + L2 LINE L2 3252 3313 0 21 36 0 0 chr4 186168774 186168802 -16159545 + AT_rich Low_complexity Low_complexity 1 28 0 2263 90 0 29 chr4 186169325 186169635 -16158712 - AluSx SINE Alu -11 301 1 389 318 87 81 chr4 186169768 186170101 -16158246 - L2 LINE L2 -19 3253 2919 474 69 23 46 chr4 186170239 186170326 -16158021 - L1PA6 LINE L1 0 6154 6070 2545 40 0 47 chr4 186170881 186171203 -16157144 - AluY SINE Alu -4 307 1 1181 266 97 30 chr4 186171224 186171697 -16156650 - MLT1D LTR MaLR 0 505 1 237 132 0 0 chr4 186171702 186171740 -16156607 - L2 LINE L2 -973 2341 2304 1833 177 16 10 chr4 186172948 186173258 -16155089 + AluJo SINE Alu 1 312 0 2401 81 0 0 chr4 186174570 186174867 -16153480 + AluY SINE Alu 1 297 -14 2213 116 0 3 chr4 186175787 186176088 -16152259 - AluSx SINE Alu -12 300 1 335 241 64 7 chr4 186176278 186176419 -16151928 - L1ME4a LINE L1 0 6121 5973 427 155 12 0 chr4 186176563 186176647 -16151700 - AluSq SINE Alu -3 310 226 1173 97 0 19 chr4 186176647 186176802 -16151545 - AluSq SINE Alu -160 153 2 1291 173 114 13 chr4 186177299 186177606 -16150741 + MER2 DNA MER2_type 1 338 -7 1264 111 106 0 chr4 186179292 186179499 -16148848 - MER30 DNA MER1_type 0 230 2 423 203 313 6 chr4 186179687 186179850 -16148497 + MER58A DNA MER1_type 10 222 -2 426 218 158 30 chr4 186180125 186180290 -16148057 - MER5A DNA MER1_type 0 189 4 2046 113 13 0 chr4 186180326 186180626 -16147721 - AluSx SINE Alu -8 304 1 655 332 40 27 chr4 186183298 186183674 -16144673 - L2 LINE L2 -872 2442 2062 450 345 65 25 chr4 186183673 186184073 -16144274 + L2 LINE L2 1541 1956 -1358 * 2187 111 0 37 chr4 186184091 186184415 -16143932 - AluSq SINE Alu -1 312 1 3075 180 45 20 chr4 186184458 186185151 -16143196 + MER67C LTR ERV1 1 710 0 585 236 0 8 chr4 186185656 186185779 -16142568 + L2 LINE L2 3172 3293 -20 250 200 0 0 chr4 186186002 186186052 -16142295 - MLT1H1 LTR MaLR -8 534 485 1332 245 50 0 chr4 186186073 186186391 -16141956 - MER58B DNA MER1_type -2 339 6 363 116 0 2 chr4 186186539 186186605 -16141742 - Alu SINE Alu -5 297 242 326 147 29 15 chr4 186186603 186186671 -16141676 - MLT1H1 LTR MaLR -205 350 282 * 603 147 0 10 chr4 186188235 186188337 -16140010 - Tigger1 DNA MER2_type 0 2418 2318 889 226 0 18 chr4 186188337 186188505 -16139842 + AluJb SINE Alu 125 289 -23 467 96 24 12 chr4 186188505 186188588 -16139759 - Tigger1 DNA MER2_type -110 2308 2225 1191 196 0 18 chr4 186188588 186188812 -16139535 + AluJo SINE Alu 1 220 -92 760 164 0 0 chr4 186188866 186188982 -16139365 + FLAM_A SINE Alu 2 117 -16 11101 115 13 36 chr4 186189000 186191256 -16137091 - Tigger1 DNA MER2_type -186 2232 1 1748 180 26 22 chr4 186191268 186191579 -16136768 - AluJo SINE Alu 0 312 1 2216 83 7 17 chr4 186191804 186192104 -16136243 - AluSx SINE Alu 0 312 16 435 374 65 9 chr4 186193279 186193493 -16134854 - MIR SINE MIR -17 245 20 452 219 10 0 chr4 186193611 186193707 -16134640 - MER5A DNA MER1_type -80 109 13 504 314 39 0 chr4 186194109 186194313 -16134034 - MER102a DNA MER1_type 0 330 119 4812 197 43 39 chr4 186194314 186196536 -16131811 - L1MC1 LINE L1 -1 6332 4096 32 0 0 0 chr4 186196541 186196573 -16131774 + AT_rich Low_complexity Low_complexity 1 32 0 257 85 51 17 chr4 186196583 186196642 -16131705 + (TA)n Simple_repeat Simple_repeat 1 61 0 328 267 70 0 chr4 186196643 186196729 -16131618 + L1MC4 LINE L1 6612 6703 -1339 2054 147 0 0 chr4 186196734 186197027 -16131320 - AluSx SINE Alu -19 293 1 2081 143 0 3 chr4 186197172 186197472 -16130875 - AluSx SINE Alu -13 299 1 183 80 0 0 chr4 186197797 186197822 -16130525 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 611 218 58 6 chr4 186197826 186198054 -16130293 - L1MB3 LINE L1 -14 6157 5901 2295 88 7 13 chr4 186198657 186198963 -16129384 + AluSq SINE Alu 1 304 -9 316 256 105 75 chr4 186199426 186199559 -16128788 + MIR3 SINE MIR 69 205 -3 1729 189 42 46 chr4 186200325 186200780 -16127567 - LTR40a LTR ERVL 0 519 67 232 237 183 0 chr4 186200844 186200937 -16127410 + MIR SINE MIR 153 262 0 2208 162 26 16 chr4 186201024 186201450 -16126897 - L1MC1 LINE L1 -1 6332 5903 1652 170 10 39 chr4 186201646 186201957 -16126390 - AluJb SINE Alu -10 302 1 1912 109 7 14 chr4 186202024 186202308 -16126039 + AluY SINE Alu 1 282 -29 24 0 0 0 chr4 186202310 186202334 -16126013 + AT_rich Low_complexity Low_complexity 1 24 0 939 115 0 14 chr4 186203138 186203277 -16125070 - FLAM_C SINE Alu -1 142 6 1965 132 17 0 chr4 186205115 186205402 -16122945 - AluJb SINE Alu -20 292 1 1791 261 59 27 chr4 186205586 186206004 -16122343 + L1ME LINE L1 163 566 -5639 2363 85 0 0 chr4 186206004 186206298 -16122049 + AluSc SINE Alu 1 294 -15 1791 261 59 27 chr4 186206298 186206406 -16121941 + L1ME LINE L1 566 669 -5536 2962 181 117 48 chr4 186206406 186207215 -16121132 + MER6 DNA MER2_type 1 865 0 1791 261 59 27 chr4 186207215 186207416 -16120931 + L1ME LINE L1 669 914 -5291 352 365 100 0 chr4 186207422 186207622 -16120725 + L1ME LINE L1 1734 1953 -4443 2255 214 48 77 chr4 186207713 186207762 -16120585 - L1MDb LINE L1 -4929 1477 1428 2308 89 0 0 chr4 186207762 186208055 -16120292 - AluSq SINE Alu -20 293 1 2255 214 48 77 chr4 186208055 186208854 -16119493 - L1MDb LINE L1 -4978 1428 660 225 371 10 0 chr4 186209161 186209258 -16119089 - MIR SINE MIR -6 256 159 265 331 41 35 chr4 186210626 186210771 -16117576 - L2 LINE L2 -341 2973 2828 381 239 25 119 chr4 186211027 186211228 -16117119 + MIR SINE MIR 33 214 -48 2047 137 0 0 chr4 186211975 186212268 -16116079 + AluJb SINE Alu 1 293 -19 313 269 138 75 chr4 186213609 186213877 -16114470 + L3 LINE CR1 1218 1502 -75 196 288 163 99 chr4 186214463 186214807 -16113540 - L2 LINE L2 -3 3269 2904 333 294 37 18 chr4 186214999 186215108 -16113239 + MER5A DNA MER1_type 79 189 0 371 220 9 216 chr4 186215246 186215473 -16112874 + MIR3 SINE MIR 11 190 -18 189 161 0 48 chr4 186215991 186216053 -16112294 + CT-rich Low_complexity Low_complexity 3 61 0 391 279 36 0 chr4 186217284 186217395 -16110952 + L2 LINE L2 3195 3309 -4 358 192 125 10 chr4 186221185 186221289 -16107058 + Charlie8 DNA MER1_type 83 198 -2219 27 0 0 0 chr4 186221736 186221763 -16106584 + AT_rich Low_complexity Low_complexity 1 27 0 2285 201 31 81 chr4 186222032 186222739 -16105608 - LTR28 LTR ERV1 0 1020 300 282 191 29 0 chr4 186222710 186222778 -16105569 - LTR1 LTR ERV1 -595 190 121 * 706 272 62 92 chr4 186222806 186223670 -16104677 - LTR28 LTR ERV1 -842 800 1 672 178 0 44 chr4 186223742 186223877 -16104470 - AluJo SINE Alu -178 134 6 21 0 0 0 chr4 186223894 186223915 -16104432 + AT_rich Low_complexity Low_complexity 1 21 0 532 253 32 39 chr4 186223924 186224078 -16104269 + L2 LINE L2 1315 1467 -1847 236 149 0 0 chr4 186225777 186225824 -16102523 + Alu SINE Alu 255 301 0 422 228 47 0 chr4 186225944 186226071 -16102276 - MLT1I LTR MaLR -274 135 3 206 215 13 0 chr4 186226500 186226579 -16101768 + (TA)n Simple_repeat Simple_repeat 2 81 0 2305 89 3 0 chr4 186226954 186227256 -16101091 + AluY SINE Alu 3 305 -6 21 0 0 0 chr4 186227520 186227541 -16100806 + AT_rich Low_complexity Low_complexity 1 21 0 2049 131 0 29 chr4 186231367 186231680 -16096667 - AluSq SINE Alu -9 304 1 1554 176 28 39 chr4 186232078 186232282 -16096065 + L1MA8 LINE L1 5927 6127 -164 2151 78 3 42 chr4 186232282 186232588 -16095759 - AluSx SINE Alu -18 294 1 1554 176 28 39 chr4 186232588 186232746 -16095601 + L1MA8 LINE L1 6127 6285 -6 198 103 0 0 chr4 186233166 186233195 -16095152 + (CA)n Simple_repeat Simple_repeat 1 29 0 222 37 0 0 chr4 186233224 186233251 -16095096 + (CA)n Simple_repeat Simple_repeat 1 27 0 183 80 0 0 chr4 186233320 186233345 -16095002 + (CA)n Simple_repeat Simple_repeat 2 26 0 1898 148 15 6 chr4 186233811 186234149 -16094198 + MLT1A1 LTR MaLR 1 341 -24 952 159 258 12 chr4 186234186 186234453 -16093894 + MSTD LTR MaLR 65 396 0 21 57 0 0 chr4 186236076 186236111 -16092236 + AT_rich Low_complexity Low_complexity 1 35 0 403 282 27 0 chr4 186236333 186236443 -16091904 + Charlie2 DNA MER1_type 35 147 -2635 2252 88 0 7 chr4 186236477 186236762 -16091585 + AluSc SINE Alu 1 283 -26 250 304 144 24 chr4 186236767 186236892 -16091455 - MIR SINE MIR -112 150 11 21 0 0 0 chr4 186237830 186237851 -16090496 + AT_rich Low_complexity Low_complexity 1 21 0 592 243 33 33 chr4 186238284 186238436 -16089911 - MIR SINE MIR -55 207 56 285 161 0 161 chr4 186238886 186238965 -16089382 - L2 LINE L2 -191 3081 3016 322 192 0 41 chr4 186238965 186239038 -16089309 - MER5B DNA MER1_type -1 177 108 3829 118 58 84 chr4 186239888 186240232 -16088115 - LTR1 LTR ERV1 0 785 434 2147 82 3 24 chr4 186240232 186240549 -16087798 - AluSp SINE Alu 0 311 1 3829 118 58 84 chr4 186240549 186241004 -16087343 - LTR1 LTR ERV1 -351 434 1 261 220 0 0 chr4 186241177 186241286 -16087061 + G-rich Low_complexity Low_complexity 1 109 0 2250 102 0 0 chr4 186242325 186242648 -16085699 - AluSq SINE Alu 0 323 1 2001 96 10 73 chr4 186242770 186243084 -16085263 - AluY SINE Alu -17 294 1 23 0 0 0 chr4 186243324 186243347 -16085000 + AT_rich Low_complexity Low_complexity 1 23 0 2437 63 3 3 chr4 186243379 186243679 -16084668 - AluY SINE Alu -2 309 10 3041 162 28 2 chr4 186243754 186244253 -16084094 - MER41E LTR ERV1 0 512 1 189 94 0 0 chr4 186246220 186246252 -16082095 + (CAAAC)n Simple_repeat Simple_repeat 3 34 0 600 238 40 7 chr4 186246575 186246726 -16081621 - MLT2B1 LTR ERVL -66 454 299 182 100 33 0 chr4 186247683 186247713 -16080634 + MIR SINE MIR 220 250 -12 2138 101 14 0 chr4 186247907 186248205 -16080142 + AluSg SINE Alu 1 302 0 228 35 0 0 chr4 186248822 186248851 -16079496 + (TATG)n Simple_repeat Simple_repeat 2 30 0 1707 142 14 41 chr4 186248851 186249146 -16079201 - AluSx SINE Alu -25 287 1 3766 121 62 66 chr4 186249258 186250029 -16078318 + LTR1 LTR ERV1 18 785 0 892 130 0 36 chr4 186250293 186250431 -16077916 + FLAM_C SINE Alu 1 133 0 283 276 9 67 chr4 186250441 186250546 -16077801 + MIR SINE MIR 82 180 -82 192 97 0 0 chr4 186250977 186251008 -16077339 + (TG)n Simple_repeat Simple_repeat 2 32 0 1955 159 126 40 chr4 186251783 186252403 -16075944 - pTR5 LTR ERV1 -497 1941 57 2036 97 68 0 chr4 186253194 186253316 -16075031 + AluSg SINE Alu 1 113 -197 335 40 0 20 chr4 186253316 186253366 -16074981 + (CA)n Simple_repeat Simple_repeat 2 50 0 2036 97 68 0 chr4 186253366 186253521 -16074826 + AluSg SINE Alu 113 297 -13 2374 84 0 10 chr4 186255692 186256002 -16072345 - AluY SINE Alu -4 307 1 2453 84 3 3 chr4 186256306 186256615 -16071732 + AluSc SINE Alu 1 309 0 1124 159 0 32 chr4 186256615 186256804 -16071543 + AluJb SINE Alu 130 312 0 236 285 118 9 chr4 186257302 186257414 -16070933 - MIR SINE MIR -65 143 33 3405 87 63 72 chr4 186258770 186258935 -16069412 + LTR12 LTR ERV1 167 332 -382 2639 39 0 3 chr4 186258935 186259240 -16069107 - AluY SINE Alu -7 304 1 3405 87 63 72 chr4 186259240 186259627 -16068720 + LTR12 LTR ERV1 332 714 0 355 235 106 41 chr4 186259628 186259798 -16068549 - L1ME3A LINE L1 -66 6104 5924 24 77 0 0 chr4 186259808 186259860 -16068487 + AT_rich Low_complexity Low_complexity 1 52 0 2007 139 0 20 chr4 186259960 186260263 -16068084 - AluJb SINE Alu -15 297 1 687 302 86 19 chr4 186260595 186260910 -16067437 + L3 LINE CR1 964 1299 -278 199 54 54 0 chr4 186260961 186260998 -16067349 + (TA)n Simple_repeat Simple_repeat 2 40 0 183 325 24 0 chr4 186261082 186261165 -16067182 + L3 LINE CR1 1344 1428 -149 25 0 0 0 chr4 186261262 186261287 -16067060 + AT_rich Low_complexity Low_complexity 1 25 0 5960 54 1 33 chr4 186261291 186261984 -16066363 - L1PA7 LINE L1 -4 6150 5481 2161 83 35 3 chr4 186261984 186262273 -16066074 - AluY SINE Alu -13 298 1 5960 54 1 33 chr4 186262273 186262333 -16066014 - L1PA7 LINE L1 -673 5481 5421 610 48 0 36 chr4 186262333 186262417 -16065930 + L1P3 LINE L1 19 99 -6362 3174 58 5 52 chr4 186262517 186262593 -16065754 + L1P LINE L1 4113 4191 -1955 3044 133 26 34 chr4 186262593 186263089 -16065258 + LTR22B LTR ERVK 1 492 0 3174 58 5 52 chr4 186263089 186263408 -16064939 + L1P LINE L1 4191 4487 -1659 2347 72 3 3 chr4 186263408 186263712 -16064635 + AluY SINE Alu 1 304 -7 3174 58 5 52 chr4 186263712 186263762 -16064585 + L1P LINE L1 4487 4538 -1608 185 0 40 0 chr4 186263775 186263800 -16064547 + (TTA)n Simple_repeat Simple_repeat 2 27 0 978 79 5 12 chr4 186263839 186264042 -16064305 - AluY SINE Alu -70 241 3 229 332 88 24 chr4 186264060 186264310 -16064037 - L2 LINE L2 -12 3301 3036 634 333 154 26 chr4 186264351 186264733 -16063614 + MLT1K LTR MaLR 18 448 -140 366 199 19 19 chr4 186265088 186265244 -16063103 + (TA)n Simple_repeat Simple_repeat 2 157 0 211 311 189 30 chr4 186265803 186265967 -16062380 - MIR SINE MIR -6 256 67 2741 148 68 9 chr4 186266295 186266754 -16061593 - LTR45B LTR ERV1 -2 487 2 293 258 26 126 chr4 186267507 186267559 -16060788 - MIR SINE MIR -44 218 162 2271 59 7 36 chr4 186267559 186267862 -16060485 - AluY SINE Alu -17 294 1 293 258 26 126 chr4 186267862 186267999 -16060348 - MIR SINE MIR -100 162 48 1183 194 86 146 chr4 186268005 186268480 -16059867 + LTR1 LTR ERV1 1 418 -367 1904 81 18 18 chr4 186268480 186268793 -16059554 + AluY SINE Alu 1 311 0 1183 194 86 146 chr4 186268793 186269050 -16059297 + LTR1 LTR ERV1 418 689 -96 2323 109 0 3 chr4 186269362 186269675 -16058672 - AluSx SINE Alu 0 312 1 1328 223 38 10 chr4 186270281 186270626 -16057721 - MLT1A1 LTR MaLR 0 365 7 2384 74 0 3 chr4 186270651 186270960 -16057387 - AluY SINE Alu -3 308 1 2200 111 0 25 chr4 186271366 186271681 -16056666 + AluSg1 SINE Alu 1 307 -2 2257 96 3 0 chr4 186272336 186272627 -16055720 - AluSc SINE Alu -17 292 1 9673 98 9 8 chr4 186272758 186272880 -16055467 - L1P LINE L1 -2102 4044 3924 2152 125 3 0 chr4 186272880 186273184 -16055163 - AluSc SINE Alu -4 305 1 9673 98 9 8 chr4 186273184 186274477 -16053870 - L1P LINE L1 -2222 3924 2628 5593 72 60 2 chr4 186274477 186275809 -16052538 + L1PA7 LINE L1 4540 5952 -202 297 275 22 0 chr4 186275802 186275893 -16052454 - L1MC4 LINE L1 -1338 6704 6612 * 473 198 9 0 chr4 186275893 186275999 -16052348 + (TA)n Simple_repeat Simple_repeat 2 108 0 229 178 0 0 chr4 186276000 186276045 -16052302 - LTR66 LTR ERVL -172 438 394 350 174 12 58 chr4 186276051 186276223 -16052124 + (TA)n Simple_repeat Simple_repeat 1 164 0 278 274 0 0 chr4 186276261 186276345 -16052002 - AluY SINE Alu -192 109 26 394 277 94 64 chr4 186277108 186277310 -16051037 - MER63A DNA MER1_type 0 210 3 1677 195 88 32 chr4 186277828 186278203 -16050144 - MSTD LTR MaLR 0 396 1 23 78 0 0 chr4 186278313 186278364 -16049983 + AT_rich Low_complexity Low_complexity 1 51 0 947 181 42 31 chr4 186278550 186278743 -16049604 + MER3 DNA MER1_type 1 195 -14 729 190 65 40 chr4 186278990 186279237 -16049110 + pTR5 LTR ERV1 741 993 -1445 2494 178 2 17 chr4 186279353 186279875 -16048472 + L1 LINE L1 4331 4844 -1302 854 35 157 0 chr4 186279875 186279990 -16048357 - LTR12 LTR ERV1 0 714 582 4096 126 158 53 chr4 186279990 186280738 -16047609 - LTR12 LTR ERV1 0 826 1 777 239 0 44 chr4 186280818 186281090 -16047257 - pTR5 LTR ERV1 -1410 1028 769 3688 152 16 1 chr4 186281095 186282033 -16046314 + L1P5 LINE L1 4832 5781 -370 198 0 0 0 chr4 186282034 186282056 -16046291 + (TA)n Simple_repeat Simple_repeat 2 23 0 32 57 0 0 chr4 186282073 186282126 -16046221 + AT_rich Low_complexity Low_complexity 1 53 0 1228 211 25 15 chr4 186283029 186283498 -16044849 - MER34 LTR ERV1 -7 535 31 23 0 0 0 chr4 186283653 186283676 -16044671 + AT_rich Low_complexity Low_complexity 1 23 0 2503 101 3 0 chr4 186283770 186284115 -16044232 - pTR5 LTR ERV1 -2046 392 47 255 216 0 0 chr4 186284122 186284173 -16044174 - LTR30 LTR ERV1 -108 614 564 269 173 19 32 chr4 186284307 186284463 -16043884 + T-rich Low_complexity Low_complexity 2 155 0 336 250 79 33 chr4 186284512 186284664 -16043683 + MIR SINE MIR 103 261 -1 184 291 25 13 chr4 186285660 186285739 -16042608 - MIR3 SINE MIR -31 177 98 1498 122 17 17 chr4 186285808 186286045 -16042302 - AluSg/x SINE Alu 0 310 74 2253 158 6 3 chr4 186286349 186286710 -16041637 - L1MA7 LINE L1 -414 5877 5516 736 124 0 0 chr4 186286711 186286824 -16041523 + L1MA7 LINE L1 6177 6289 -2 229 316 147 37 chr4 186287250 186287386 -16040961 + MIR3 SINE MIR 2 152 -56 2202 89 0 46 chr4 186288591 186288917 -16039430 - AluY SINE Alu 0 311 1 328 313 15 8 chr4 186289657 186289788 -16038559 - L1ME3A LINE L1 -19 6151 6020 21 0 0 0 chr4 186289816 186289837 -16038510 + AT_rich Low_complexity Low_complexity 1 21 0 5639 139 11 19 chr4 186289837 186290999 -16037348 - L1PB4 LINE L1 -1 6155 5006 3283 108 64 85 chr4 186290992 186291168 -16037179 - L1MC1 LINE L1 -2 6331 6153 * 1759 87 13 0 chr4 186291168 186291398 -16036949 - AluY SINE Alu -17 294 62 3283 108 64 85 chr4 186291398 186291881 -16036466 - L1MC1 LINE L1 -180 6153 5686 1353 213 17 37 chr4 186291882 186292178 -16036169 + AluJo SINE Alu 3 292 -10 777 176 0 106 chr4 186292582 186292752 -16035595 - AluSg/x SINE Alu -28 284 133 832 169 97 7 chr4 186292934 186293088 -16035259 - FAM SINE Alu -7 168 1 1351 129 5 5 chr4 186293579 186293780 -16034567 + AluSx SINE Alu 1 201 -111 333 125 0 0 chr4 186293783 186293839 -16034508 + (TCTCC)n Simple_repeat Simple_repeat 1 56 0 497 198 0 0 chr4 186293876 186293962 -16034385 + AluSg/x SINE Alu 214 299 -13 301 314 19 9 chr4 186294804 186294909 -16033438 + CT-rich Low_complexity Low_complexity 5 110 0 2471 94 35 0 chr4 186295139 186295480 -16032867 + LTR1 LTR ERV1 433 785 0 1769 145 60 0 chr4 186295632 186295915 -16032432 + AluSx SINE Alu 1 300 -12 22 35 0 0 chr4 186297258 186297287 -16031060 + AT_rich Low_complexity Low_complexity 1 29 0 211 254 99 0 chr4 186298288 186298359 -16029988 - MIR SINE MIR -2 260 183 226 146 24 0 chr4 186298620 186298661 -16029686 + LTR67 LTR ERVL 487 528 -29 275 338 45 45 chr4 186298798 186298931 -16029416 + MIR SINE MIR 24 156 -106 1079 204 9 14 chr4 186299362 186299578 -16028769 + AluJb SINE Alu 87 301 -11 1836 143 35 3 chr4 186299835 186300121 -16028226 - AluSx SINE Alu -15 297 3 593 266 219 33 chr4 186300290 186300655 -16027692 - L2 LINE L2 -39 3274 2842 453 181 261 22 chr4 186300663 186300725 -16027622 + MER5B DNA MER1_type 2 48 -130 1992 96 11 7 chr4 186300725 186301006 -16027341 + AluSp SINE Alu 1 282 -31 195 42 0 0 chr4 186301006 186301030 -16027317 + (CA)n Simple_repeat Simple_repeat 1 24 0 453 181 261 22 chr4 186301030 186301104 -16027243 + MER5B DNA MER1_type 47 172 -6 695 298 62 22 chr4 186301207 186301529 -16026818 - L2 LINE L2 -575 2739 2405 1055 264 86 11 chr4 186302158 186302507 -16025840 + L1ME3 LINE L1 5639 6013 -149 6073 92 211 10 chr4 186302618 186303611 -16024736 + L1P3 LINE L1 293 1484 -4977 787 283 38 76 chr4 186303874 186304102 -16024245 - MLT1I LTR MaLR 0 409 195 2156 110 0 7 chr4 186304102 186304392 -16023955 - AluSg SINE Alu -8 302 15 787 283 38 76 chr4 186304392 186304477 -16023870 - MLT1I LTR MaLR -214 195 108 2570 128 14 3 chr4 186304536 186304896 -16023451 + THE1B LTR MaLR 1 364 0 203 312 28 18 chr4 186305811 186305920 -16022427 - L2 LINE L2 -8 3264 3155 2401 174 66 14 chr4 186306037 186306475 -16021872 - LOR1b LTR ERV1 0 461 1 327 331 24 23 chr4 186306542 186306682 -16021665 - MER5B DNA MER1_type -37 152 1 252 0 0 0 chr4 186309334 186309362 -16018985 + (TA)n Simple_repeat Simple_repeat 2 29 0 530 189 0 21 chr4 186310022 186310117 -16018230 - AluSc SINE Alu -215 94 2 1526 186 42 3 chr4 186310656 186310941 -16017406 - AluJb SINE Alu -16 296 1 1936 138 10 0 chr4 186311373 186311685 -16016662 + AluSx SINE Alu 1 312 0 728 159 0 15 chr4 186312556 186312688 -16015659 - L1MA4 LINE L1 0 6300 6171 204 218 92 92 chr4 186312943 186313030 -16015317 - L3b LINE CR1 -200 1383 1297 516 330 132 0 chr4 186313396 186313623 -16014724 + MIR SINE MIR 3 259 -3 2386 81 3 3 chr4 186313884 186314191 -16014156 - AluSq SINE Alu -6 307 1 1587 179 7 11 chr4 186314918 186315203 -16013144 - AluJo SINE Alu -15 297 14 712 78 0 0 chr4 186315676 186315766 -16012581 + 5S rRNA rRNA 1 90 -31 1922 137 7 7 chr4 186315780 186316080 -16012267 - AluSx SINE Alu -12 300 1 214 297 81 40 chr4 186317799 186317947 -16010400 + MIR3 SINE MIR 10 163 -45 192 195 0 142 chr4 186318767 186318844 -16009503 + L2 LINE L2 2470 2528 -786 2207 109 6 6 chr4 186318844 186319157 -16009190 + AluSq SINE Alu 1 313 0 192 195 0 142 chr4 186319157 186319192 -16009155 + L2 LINE L2 2528 2566 -748 577 243 0 0 chr4 186319285 186319396 -16008951 + L2 LINE L2 3198 3308 -5 573 144 0 0 chr4 186319398 186319502 -16008845 + (GGGGA)n Simple_repeat Simple_repeat 2 105 0 187 326 76 0 chr4 186319648 186319740 -16008607 - L2 LINE L2 -22 3291 3193 21 36 0 0 chr4 186319992 186320020 -16008327 + AT_rich Low_complexity Low_complexity 1 28 0 2190 93 21 0 chr4 186320076 186320366 -16007981 + AluSx SINE Alu 1 296 -16 186 206 0 0 chr4 186320383 186320417 -16007930 - L2 LINE L2 -12 3301 3268 590 81 0 0 chr4 186321106 186321180 -16007167 + MADE1 DNA Mariner 4 77 -3 2438 94 0 0 chr4 186321866 186322173 -16006174 + AluSx SINE Alu 1 307 -5 617 285 44 20 chr4 186322234 186322484 -16005863 - MIR SINE MIR 0 262 2 200 189 75 0 chr4 186322522 186322575 -16005772 - MIR SINE MIR -87 175 119 5009 45 0 15 chr4 186322845 186323441 -16004906 - L1PA8 LINE L1 0 6172 5586 305 207 0 17 chr4 186323692 186323750 -16004597 - MER63 DNA MER1_type -316 744 688 216 160 42 34 chr4 186323764 186323883 -16004464 + (TA)n Simple_repeat Simple_repeat 2 121 0 351 0 0 0 chr4 186323909 186323948 -16004399 + (TG)n Simple_repeat Simple_repeat 2 40 0 1561 195 60 40 chr4 186323978 186324358 -16003989 - LOR1b LTR ERV1 -73 388 1 3815 161 60 107 chr4 186324495 186325453 -16002894 + MER21A LTR ERV1 13 925 -6 383 327 101 0 chr4 186325652 186325811 -16002536 - MIR SINE MIR -6 256 82 438 118 0 2 chr4 186325829 186326068 -16002279 + AluSc SINE Alu 1 295 -14 2481 74 0 3 chr4 186326243 186326554 -16001793 + AluY SINE Alu 1 310 -1 1925 157 49 26 chr4 186327779 186328039 -16000308 + MLT1B LTR MaLR 1 272 -118 2415 52 13 3 chr4 186328039 186328345 -16000002 + AluY SINE Alu 1 309 -2 1925 157 49 26 chr4 186328345 186328429 -15999918 + MLT1B LTR MaLR 272 353 -37 297 0 0 0 chr4 186328434 186328467 -15999880 + (TG)n Simple_repeat Simple_repeat 1 33 0 10206 189 48 13 chr4 186328659 186331766 -15996581 - L1PBa LINE L1 -1854 5008 1504 2198 130 3 0 chr4 186331766 186332074 -15996273 - AluSx SINE Alu -3 309 1 10206 189 48 13 chr4 186332074 186333628 -15994719 - L1PBa LINE L1 -5358 1504 6 811 201 41 67 chr4 186333802 186333871 -15994476 - MER5A DNA MER1_type 0 189 120 2082 116 3 3 chr4 186333871 186334165 -15994182 + AluSp SINE Alu 6 299 -14 811 201 41 67 chr4 186334165 186334289 -15994058 - MER5A DNA MER1_type -69 120 1 2386 72 0 3 chr4 186334638 186334931 -15993416 - AluY SINE Alu -19 292 1 463 263 25 56 chr4 186335149 186335309 -15993038 - MER63 DNA MER1_type -276 786 6 4858 118 14 16 chr4 186337223 186337763 -15990584 - L1PA13 LINE L1 -11 6152 5613 2394 74 13 3 chr4 186337763 186338062 -15990285 - AluSc SINE Alu -7 302 1 4858 118 14 16 chr4 186338062 186338253 -15990094 - L1PA13 LINE L1 -550 5613 5423 2168 87 0 11 chr4 186338467 186338800 -15989547 + AluY SINE Alu 1 330 0 2703 154 40 49 chr4 186339483 186340178 -15988169 - pTR5 LTR ERV1 -1009 1429 741 180 323 31 15 chr4 186340392 186340457 -15987890 + MIR SINE MIR 56 121 -87 22 35 0 0 chr4 186341634 186341663 -15986684 + AT_rich Low_complexity Low_complexity 1 29 0 759 78 0 0 chr4 186342909 186343012 -15985335 + Alu SINE Alu 195 297 -14 1411 193 81 27 chr4 186343169 186343509 -15984838 + Tigger7 DNA MER2_type 3 2491 0 201 343 91 37 chr4 186343716 186343958 -15984389 + L2 LINE L2 2423 2677 -637 307 298 19 29 chr4 186344184 186344288 -15984059 + L2 LINE L2 2985 3087 -185 649 294 35 10 chr4 186344801 186345002 -15983345 - MIR SINE MIR 0 262 57 310 337 114 5 chr4 186345216 186345409 -15982938 + HERV16 LTR ERVL 1803 2016 -2980 2223 331 72 33 chr4 186345428 186347008 -15981339 + HERV16 LTR ERVL 2132 3804 -1960 361 350 65 5 chr4 186347021 186347221 -15981126 + HERV16 LTR ERVL 4692 4903 -861 635 282 59 69 chr4 186347232 186347725 -15980622 + MLT1J LTR MaLR 24 511 0 968 212 11 0 chr4 186348062 186348251 -15980096 + MLT2B1 LTR ERVL 1 191 -329 350 294 47 0 chr4 186348776 186348861 -15979486 + MER58A DNA MER1_type 8 96 -128 310 191 118 0 chr4 186348878 186348946 -15979401 + MER58A DNA MER1_type 145 220 -4 2240 108 3 0 chr4 186349756 186350063 -15978284 - AluSx SINE Alu -4 308 1 596 203 8 0 chr4 186353627 186353750 -15974597 - FLAM_C SINE Alu -19 124 1 2026 147 48 23 chr4 186353750 186354146 -15974201 - L1MA8 LINE L1 -46 6245 5840 1789 154 3 3 chr4 186354256 186354542 -15973805 + AluJb SINE Alu 11 296 -16 4461 165 89 67 chr4 186354637 186355840 -15972507 + Tigger3b DNA MER2_type 1 1230 -1 697 235 157 9 chr4 186357402 186357619 -15970728 + MIR SINE MIR 1 249 -13 1295 246 137 30 chr4 186357675 186358190 -15970157 - MLT1F1 LTR MaLR -1 566 1 2242 60 0 3 chr4 186359229 186359511 -15968836 - AluY SINE Alu -30 281 1 306 257 0 0 chr4 186359860 186359934 -15968413 - MER33 DNA MER1_type -21 342 269 1180 96 0 6 chr4 186359943 186360100 -15968247 + AluSc SINE Alu 135 290 -19 784 179 118 5 chr4 186360104 186360299 -15968048 - MER33 DNA MER1_type -106 218 2 2050 136 7 3 chr4 186360356 186360665 -15967682 + AluSx SINE Alu 1 310 -2 5298 124 131 80 chr4 186361731 186362903 -15965444 + Tigger3b DNA MER2_type 1 1231 0 2926 178 152 120 chr4 186363332 186363892 -15964455 - L1MC3 LINE L1 -1 7784 7244 239 286 22 22 chr4 186363892 186363983 -15964364 - MLT1F1 LTR MaLR -442 125 35 2926 178 152 120 chr4 186363983 186364436 -15963911 - L1MC3 LINE L1 -541 7244 6645 240 35 0 0 chr4 186364436 186364465 -15963882 + (CA)n Simple_repeat Simple_repeat 2 30 0 267 31 0 0 chr4 186365018 186365050 -15963297 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 7241 39 26 10 chr4 186365050 186366090 -15962257 - L1PA5 LINE L1 -13 6141 5097 241 273 44 77 chr4 186366207 186366390 -15961957 - MLT1I LTR MaLR -127 282 106 375 280 102 6 chr4 186366539 186366696 -15961651 - MLT1J LTR MaLR -8 503 332 541 273 73 41 chr4 186366723 186366943 -15961404 - MLT1J LTR MaLR -249 262 36 2385 54 3 3 chr4 186367614 186367911 -15960436 + AluY SINE Alu 1 297 -14 219 88 0 0 chr4 186368858 186368892 -15959455 + (T)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr4 186368940 186368963 -15959384 + AT_rich Low_complexity Low_complexity 1 23 0 190 0 0 62 chr4 186370565 186370597 -15957750 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2143 104 3 3 chr4 186370597 186370885 -15957462 - AluSq SINE Alu -25 288 1 24 0 0 0 chr4 186371287 186371311 -15957036 + AT_rich Low_complexity Low_complexity 1 24 0 223 274 0 0 chr4 186371331 186371382 -15956965 - L2 LINE L2 -3 3269 3219 1862 121 56 91 chr4 186371914 186372310 -15956037 - MSTD LTR MaLR -12 384 3 28 0 0 0 chr4 186372488 186372516 -15955831 + AT_rich Low_complexity Low_complexity 1 28 0 461 111 0 0 chr4 186372625 186372688 -15955659 - MER58A DNA MER1_type 0 224 162 236 192 45 51 chr4 186372856 186373033 -15955314 + (TTGTG)n Simple_repeat Simple_repeat 5 180 0 440 108 0 48 chr4 186373213 186373296 -15955051 - AluY SINE Alu -196 115 37 399 241 0 0 chr4 186373297 186373376 -15954971 - MER58A DNA MER1_type -28 79 1 442 300 29 0 chr4 186374479 186374619 -15953728 - MLT1J2 LTR MaLR -286 164 21 459 257 21 84 chr4 186376042 186376279 -15952068 + L2 LINE L2 3048 3269 -44 192 214 0 0 chr4 186377157 186377213 -15951134 + (AATAG)n Simple_repeat Simple_repeat 2 57 0 236 248 107 33 chr4 186377390 186377511 -15950836 + L1MC4 LINE L1 6576 6705 -1337 1660 202 26 9 chr4 186377533 186377874 -15950473 + MER7A DNA MER2_type 2 346 0 269 296 79 44 chr4 186378246 186378449 -15949898 - MIR SINE MIR -2 260 51 227 333 70 51 chr4 186379131 186379287 -15949060 + MIR SINE MIR 54 212 -50 300 182 18 0 chr4 186380593 186380648 -15947699 + U7 snRNA snRNA 2 57 -6 2228 103 0 3 chr4 186380941 186381251 -15947096 + AluSq SINE Alu 1 309 -4 27 29 0 0 chr4 186381650 186381684 -15946663 + AT_rich Low_complexity Low_complexity 1 34 0 287 294 79 32 chr4 186384312 186384438 -15943909 + MLT1I LTR MaLR 109 240 -169 242 295 12 11 chr4 186384463 186384558 -15943789 + MLT1J1 LTR MaLR 318 399 -10 665 259 161 37 chr4 186385521 186385949 -15942398 + L1ME4a LINE L1 5522 6002 -119 297 329 56 69 chr4 186386176 186386480 -15941867 + L2 LINE L2 2968 3267 -5 21 0 0 0 chr4 186387085 186387106 -15941241 + AT_rich Low_complexity Low_complexity 1 21 0 732 48 40 65 chr4 186388183 186388307 -15940040 - L1PA14 LINE L1 -4 6157 6037 32 0 0 0 chr4 186389568 186389600 -15938747 + AT_rich Low_complexity Low_complexity 1 32 0 2016 136 0 13 chr4 186390538 186390847 -15937500 - AluSx SINE Alu -7 305 1 651 150 28 2 chr4 186391589 186391835 -15936512 + AluSx SINE Alu 1 302 -8 2704 13 3 6 chr4 186392837 186393148 -15935199 + AluYb8 SINE Alu 1 310 -8 204 184 0 0 chr4 186393476 186393525 -15934822 + (CA)n Simple_repeat Simple_repeat 2 50 0 1227 218 112 28 chr4 186393590 186394017 -15934330 + MER31B LTR ERV1 2 464 -2 1389 245 90 29 chr4 186395745 186396301 -15932046 - MLT1G LTR MaLR 0 590 1 2755 160 6 22 chr4 186396602 186397096 -15931251 - MER66B LTR ERV1 0 486 1 618 324 123 33 chr4 186397415 186397534 -15930813 + L2 LINE L2 2880 2987 -326 2140 86 3 48 chr4 186397534 186397849 -15930498 - AluY SINE Alu -10 301 1 618 324 123 33 chr4 186397849 186398127 -15930220 + L2 LINE L2 2987 3313 0 1479 155 12 64 chr4 186398881 186399223 -15929124 - THE1B LTR MaLR 0 364 41 339 260 16 16 chr4 186399396 186399519 -15928828 - THE1C LTR MaLR -252 123 1 2184 100 10 0 chr4 186400289 186400589 -15927758 - AluSq SINE Alu -10 303 1 988 301 112 78 chr4 186401250 186402687 -15925660 + L1MC/D LINE L1 3749 5234 -912 380 289 145 22 chr4 186402704 186403039 -15925308 + L1MC/D LINE L1 5267 5647 -570 1800 149 30 46 chr4 186403168 186403538 -15924809 - THE1B LTR MaLR 0 364 1 211 51 0 51 chr4 186403763 186403802 -15924545 + (TAAAA)n Simple_repeat Simple_repeat 5 41 0 21 36 0 0 chr4 186403899 186403927 -15924420 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 186404540 186404568 -15923779 + AT_rich Low_complexity Low_complexity 1 28 0 5849 107 1 21 chr4 186406082 186407029 -15921318 - pTR5 LTR ERV1 0 2438 6 340 183 7 120 chr4 186407005 186407147 -15921200 - pTR5 LTR ERV1 -1066 1372 1247 * 3756 138 86 29 chr4 186508552 186509003 -15819344 + MER50 LTR ERV1 1 506 -228 18410 86 20 0 chr4 186509003 186512382 -15815965 + L1PA7 LINE L1 2763 6154 0 3756 138 86 29 chr4 186512382 186512613 -15815734 + MER50 LTR ERV1 506 722 -12 264 30 0 0 chr4 186512818 186512851 -15815496 + (TG)n Simple_repeat Simple_repeat 2 34 0 358 238 20 30 chr4 186513553 186513654 -15814693 - MIR SINE MIR -20 242 143 29 28 0 0 chr4 186514117 186514153 -15814194 + AT_rich Low_complexity Low_complexity 1 36 0 433 311 105 11 chr4 186515092 186515282 -15813065 - MIR SINE MIR -46 216 9 372 285 167 7 chr4 186515313 186515451 -15812896 - MER5A DNA MER1_type 0 189 28 5988 133 19 16 chr4 186515451 186516417 -15811930 - LTR5 LTR ERVK 0 969 1 326 100 17 0 chr4 186516518 186516578 -15811769 + (TC)n Simple_repeat Simple_repeat 1 61 0 1521 226 29 47 chr4 186516737 186517223 -15811124 + MLT1D LTR MaLR 22 498 -7 36 62 0 0 chr4 186517451 186517515 -15810832 + AT_rich Low_complexity Low_complexity 1 64 0 957 228 48 68 chr4 186517557 186517912 -15810435 - MLT1D LTR MaLR -101 404 57 773 146 8 15 chr4 186518319 186518449 -15809898 - AluJo SINE Alu -175 137 9 2397 159 48 7 chr4 186520176 186520591 -15807756 - Tigger2a DNA MER2_type -1 433 2 646 235 54 41 chr4 186521043 186521264 -15807083 - MLT1A2 LTR MaLR 0 374 151 235 192 5 16 chr4 186521273 186521303 -15807044 - L1MB4 LINE L1 -1 6182 6153 2195 129 3 0 chr4 186521303 186521605 -15806742 + AluSx SINE Alu 1 303 -9 372 43 0 0 chr4 186521605 186521651 -15806696 + (TA)n Simple_repeat Simple_repeat 2 47 0 235 192 5 16 chr4 186521651 186521703 -15806644 - L1MB4 LINE L1 -28 6155 6100 825 222 0 6 chr4 186521706 186521868 -15806479 - MLT1A2 LTR MaLR -213 161 1 34 57 0 34 chr4 186523839 186523927 -15804420 + AT_rich Low_complexity Low_complexity 1 85 0 2198 112 86 69 chr4 186524895 186525079 -15803268 + MSTA LTR MaLR 1 180 -248 1969 141 0 0 chr4 186525079 186525362 -15802985 + AluSx SINE Alu 3 285 -27 2198 112 86 69 chr4 186525362 186525596 -15802751 + MSTA LTR MaLR 180 426 -2 447 245 63 14 chr4 186526305 186526448 -15801899 + L1ME3 LINE L1 6012 6161 -1 1517 148 62 4 chr4 186526459 186526702 -15801645 + AluSp SINE Alu 27 283 -30 204 257 0 0 chr4 186527395 186527465 -15800882 + CT-rich Low_complexity Low_complexity 3 72 0 5849 201 44 33 chr4 186528273 186528843 -15799504 - L1M1 LINE L1 -2399 5166 4604 2256 61 16 42 chr4 186528843 186529154 -15799193 - AluY SINE Alu -8 303 1 5849 201 44 33 chr4 186529154 186530829 -15797518 - L1M1 LINE L1 -2961 4604 2895 1933 189 68 34 chr4 186530845 186531289 -15797058 - LTR2B LTR ERV1 0 490 32 2934 166 50 3 chr4 186531323 186531973 -15796374 - L1M1 LINE L1 -4709 2856 2214 1555 219 0 6 chr4 186531979 186532294 -15796053 + MER57A LTR ERV1 88 400 -3 1039 191 25 5 chr4 186532327 186532531 -15795816 - L1M1 LINE L1 -7331 234 27 2350 185 35 5 chr4 186532618 186533040 -15795307 - Tigger2 DNA MER2_type 0 2718 2284 3297 36 0 0 chr4 186533064 186533455 -15794892 + L1PA3 LINE L1 5762 6152 -3 359 154 0 46 chr4 186533627 186533692 -15794655 - Tigger2 DNA MER2_type -2656 62 1 1913 94 0 0 chr4 186533908 186534163 -15794184 - AluY SINE Alu 0 311 57 1090 203 37 64 chr4 186534186 186534482 -15793865 + MLT1B LTR MaLR 101 388 -2 739 244 42 36 chr4 186534828 186535188 -15793159 + Charlie1 DNA MER1_type 2385 2746 -15 10740 228 59 34 chr4 186535500 186541484 -15786863 + L1MA10 LINE L1 1 5830 -568 342 0 0 0 chr4 186541484 186541522 -15786825 + (CA)n Simple_repeat Simple_repeat 2 39 0 10740 228 59 34 chr4 186541522 186541883 -15786464 + L1MA10 LINE L1 5830 6238 -160 249 33 0 0 chr4 186541883 186541913 -15786434 + (TAA)n Simple_repeat Simple_repeat 1 30 0 10740 228 59 34 chr4 186541913 186542060 -15786287 + L1MA10 LINE L1 6238 6380 -18 299 360 86 32 chr4 186542074 186542446 -15785901 + L2 LINE L2 2432 2823 -491 875 292 117 13 chr4 186542448 186542825 -15785522 + MLT1H LTR MaLR 3 418 -131 197 361 98 22 chr4 186543005 186543188 -15785159 + L2 LINE L2 2898 3094 -219 2145 133 3 0 chr4 186543493 186543802 -15784545 - AluSx SINE Alu -2 310 1 2227 181 12 24 chr4 186543811 186544226 -15784121 - MSTC LTR MaLR 0 428 19 35 0 0 0 chr4 186545191 186545226 -15783121 + AT_rich Low_complexity Low_complexity 1 35 0 949 292 118 32 chr4 186545435 186545928 -15782419 + MLT1H1 LTR MaLR 3 537 -18 966 229 28 0 chr4 186545965 186546183 -15782164 - MER58A DNA MER1_type 0 224 1 537 255 136 25 chr4 186547189 186547432 -15780915 - L1ME1 LINE L1 -5 6161 5892 1432 203 111 42 chr4 186547449 186547685 -15780662 - L1MA7 LINE L1 -6 6285 6067 2244 95 24 0 chr4 186547685 186547981 -15780366 - AluSg SINE Alu -7 303 1 1432 203 111 42 chr4 186547981 186548125 -15780222 - L1MA7 LINE L1 -224 6067 5610 494 193 131 28 chr4 186548125 186548301 -15780046 - L1MC4 LINE L1 -2161 6275 6082 313 267 111 52 chr4 186548306 186548478 -15779869 + MLT1B LTR MaLR 3 184 -206 255 79 0 0 chr4 186548482 186548520 -15779827 + (TC)n Simple_repeat Simple_repeat 1 38 0 820 149 22 83 chr4 186548538 186548719 -15779628 + MLT1B LTR MaLR 221 390 0 2049 162 38 30 chr4 186548726 186549153 -15779194 - MSTB1 LTR MaLR -2 430 1 2078 246 86 36 chr4 186549169 186549347 -15779000 - L1MC4 LINE L1 -489 6071 5903 579 81 30 0 chr4 186549347 186549446 -15778901 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 2078 246 86 36 chr4 186549446 186550207 -15778140 - L1MC4 LINE L1 -657 5903 5067 302 0 26 0 chr4 186550207 186550245 -15778102 + (TG)n Simple_repeat Simple_repeat 2 40 0 2078 246 86 36 chr4 186550245 186550529 -15777818 - L1MC4 LINE L1 -1493 5067 4799 588 243 92 31 chr4 186550576 186550868 -15777479 - L1MC4 LINE L1 -2603 3937 3628 * 1765 238 98 25 chr4 186550858 186553235 -15775112 - L1MC4 LINE L1 -3158 3382 806 609 225 93 28 chr4 186553250 186553432 -15774915 - MLT1C LTR MaLR -273 194 1 1815 201 31 20 chr4 186553575 186553967 -15774380 + MSTD LTR MaLR 1 396 0 274 306 51 51 chr4 186553997 186554193 -15774154 - L1MC4 LINE L1 -6330 210 15 * 289 269 60 24 chr4 186554190 186554439 -15773908 - L1ME LINE L1 -3981 2099 1842 208 185 62 0 chr4 186554452 186554517 -15773830 + (TA)n Simple_repeat Simple_repeat 1 69 0 1604 287 87 27 chr4 186554591 186555835 -15772512 - L1ME LINE L1 -4454 1626 334 22 0 0 0 chr4 186556301 186556323 -15772024 + AT_rich Low_complexity Low_complexity 1 22 0 30 93 0 0 chr4 186557573 186557659 -15770688 + AT_rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr4 186557717 186557738 -15770609 + AT_rich Low_complexity Low_complexity 1 21 0 400 265 42 74 chr4 186558065 186558280 -15770067 - MER21B LTR ERV1 -558 305 98 273 228 178 30 chr4 186558256 186558357 -15769990 - MER77 LTR ERV1 -411 194 79 * 2127 161 159 58 chr4 186558953 186559500 -15768847 + MER6A DNA MER2_type 4 605 0 2116 195 30 34 chr4 186559638 186560110 -15768237 - LTR42 LTR ERVL -1 494 25 640 318 33 4 chr4 186560234 186560476 -15767871 - MIR SINE MIR -3 259 11 2019 127 0 0 chr4 186560542 186560854 -15767493 + AluSx SINE Alu 1 312 0 23 33 0 0 chr4 186561995 186562025 -15766322 + AT_rich Low_complexity Low_complexity 1 30 0 1378 204 18 14 chr4 186562034 186562318 -15766029 - AluJo SINE Alu -27 285 1 2280 73 0 0 chr4 186562374 186562649 -15765698 - AluY SINE Alu -36 275 1 942 300 69 13 chr4 186564933 186565250 -15763097 - LTR16A LTR ERVL 0 450 116 767 163 5 33 chr4 186566497 186566681 -15761666 + GA-rich Low_complexity Low_complexity 2 180 0 1845 141 33 7 chr4 186566730 186567029 -15761318 - AluJb SINE Alu -5 307 1 321 300 33 0 chr4 186567085 186567175 -15761172 - MIR SINE MIR -113 149 57 35 78 0 0 chr4 186569047 186569124 -15759223 + AT_rich Low_complexity Low_complexity 1 77 0 335 254 179 30 chr4 186569829 186570030 -15758317 + MLT1L LTR MaLR 19 249 -366 238 298 188 32 chr4 186570023 186570241 -15758106 + MLT1L LTR MaLR 362 613 -2 * 1029 264 130 70 chr4 186570604 186571090 -15757257 + MLT1H1 LTR MaLR 3 562 -33 1547 129 133 0 chr4 186571134 186571390 -15756957 + AluSx SINE Alu 5 294 -18 1654 169 40 13 chr4 186571775 186572077 -15756270 + AluSg SINE Alu 1 310 0 322 239 11 0 chr4 186573245 186573333 -15755014 + (TA)n Simple_repeat Simple_repeat 1 89 0 222 193 0 0 chr4 186573391 186573448 -15754899 + (TA)n Simple_repeat Simple_repeat 2 58 0 459 117 3 14 chr4 186573993 186574083 -15754264 + MLT1A1 LTR MaLR 250 416 -51 12290 78 16 10 chr4 186574145 186576579 -15751768 + L1PA7 LINE L1 3703 6154 0 1434 181 78 53 chr4 186576690 186576985 -15751362 + MLT1A2 LTR MaLR 2 309 -65 2073 118 0 16 chr4 186576985 186577299 -15751048 - AluSc SINE Alu 0 309 1 1434 181 78 53 chr4 186577299 186577363 -15750984 + MLT1A2 LTR MaLR 309 370 -4 297 302 82 0 chr4 186578056 186578215 -15750132 + L1MEd LINE L1 58 229 -5890 366 314 34 14 chr4 186578537 186578744 -15749603 + L1MEd LINE L1 592 802 -5317 2143 106 0 17 chr4 186579416 186579709 -15748638 + AluSq SINE Alu 5 292 -21 413 313 85 17 chr4 186580065 186580241 -15748106 - MIR SINE MIR -48 214 27 346 330 0 0 chr4 186580263 186580351 -15747996 + MIR SINE MIR 58 145 -117 27 73 0 0 chr4 186580468 186580523 -15747824 + AT_rich Low_complexity Low_complexity 1 55 0 205 302 0 0 chr4 186581843 186581906 -15746441 + L2 LINE L2 2349 2411 -903 711 282 51 95 chr4 186581927 186582330 -15746017 + L2 LINE L2 2519 2882 -431 2949 177 29 26 chr4 186582330 186582581 -15745766 + L1PB4 LINE L1 5532 5781 -375 192 40 0 0 chr4 186582581 186582606 -15745741 + (CA)n Simple_repeat Simple_repeat 2 26 0 2949 177 29 26 chr4 186582606 186582976 -15745371 + L1PB4 LINE L1 5781 6155 -1 711 282 51 95 chr4 186582976 186583390 -15744957 + L2 LINE L2 2882 3313 0 228 301 54 76 chr4 186583493 186583809 -15744538 + L2 LINE L2 860 1168 -2146 24 67 0 0 chr4 186584622 186584667 -15743680 + AT_rich Low_complexity Low_complexity 1 45 0 5449 28 0 2 chr4 186584669 186585311 -15743036 + L1PA3 LINE L1 5514 6154 -1 26 0 0 0 chr4 186585571 186585597 -15742750 + AT_rich Low_complexity Low_complexity 1 26 0 1591 237 11 16 chr4 186585622 186585989 -15742358 - MLT1A1 LTR MaLR 0 365 1 1555 189 0 36 chr4 186586377 186586683 -15741664 + AluJb SINE Alu 7 301 -11 313 330 0 9 chr4 186587856 186587968 -15740379 + MLT1I LTR MaLR 63 173 -236 1704 150 23 10 chr4 186588240 186588540 -15739807 - AluJo SINE Alu -8 304 1 351 121 0 0 chr4 186588944 186589002 -15739345 + (TC)n Simple_repeat Simple_repeat 2 59 0 242 324 57 9 chr4 186589310 186589415 -15738932 + L2 LINE L2 212 321 -2993 2388 301 116 31 chr4 186590132 186591442 -15736905 + L2 LINE L2 22 1442 -1872 1094 286 98 21 chr4 186591463 186591890 -15736457 + MLT2B1 LTR ERVL 1 460 -60 595 231 106 5 chr4 186592033 186592232 -15736115 - LTR33 LTR ERVL -257 264 46 227 152 0 0 chr4 186592636 186592682 -15735665 - LTR66 LTR ERVL -171 439 394 23 54 0 0 chr4 186592686 186592723 -15735624 + AT_rich Low_complexity Low_complexity 1 37 0 8214 192 40 8 chr4 186593627 186596249 -15732098 - L1MA7 LINE L1 -2 6289 3579 357 169 99 0 chr4 186596250 186596321 -15732026 + MSTB2 LTR MaLR 1 78 -379 2407 70 0 10 chr4 186596423 186596737 -15731610 - AluY SINE Alu 0 311 1 632 286 131 9 chr4 186597169 186597498 -15730849 - L1ME3A LINE L1 -208 5962 5594 309 143 41 0 chr4 186598443 186598492 -15729855 + MLT1E1 LTR MaLR 1 51 -603 1005 245 61 0 chr4 186598525 186598770 -15729577 + MLT1E3 LTR MaLR 365 624 0 304 276 119 8 chr4 186598771 186598905 -15729442 - L1ME3A LINE L1 -1000 5146 4998 321 278 81 43 chr4 186599001 186599235 -15729112 + L1M4 LINE L1 4377 4619 -1527 1810 121 28 0 chr4 186599302 186599584 -15728763 + AluJb SINE Alu 14 303 -9 483 250 29 52 chr4 186599627 186599799 -15728548 + MER97c DNA MER1_type? 9 176 -914 248 293 142 26 chr4 186599849 186600081 -15728266 + L1M4 LINE L1 4740 4998 -1148 43658 43 1 1 chr4 186602353 186608509 -15719838 - L1PA3 LINE L1 -3 6152 1 1528 155 4 4 chr4 186608823 186609068 -15719279 - AluSx SINE Alu -8 304 60 180 111 0 0 chr4 186610227 186610254 -15718093 + (TA)n Simple_repeat Simple_repeat 2 28 0 297 0 0 0 chr4 186610340 186610373 -15717974 + (TG)n Simple_repeat Simple_repeat 2 34 0 1197 146 19 9 chr4 186610423 186610635 -15717712 + L1 LINE L1 3353 3566 -2580 1367 211 43 77 chr4 186610669 186611086 -15717261 - MSTB1 LTR MaLR -3 429 27 207 209 0 0 chr4 186611186 186611229 -15717118 + (TA)n Simple_repeat Simple_repeat 2 44 0 195 162 0 0 chr4 186611229 186611266 -15717081 + (CA)n Simple_repeat Simple_repeat 2 38 0 266 291 164 34 chr4 186611278 186611663 -15716684 - L1ME LINE L1 -404 5692 5258 182 37 37 0 chr4 186611664 186611691 -15716656 + (TC)n Simple_repeat Simple_repeat 1 28 0 2815 97 70 4 chr4 186611891 186612347 -15716000 + LTR19A LTR ERV1 1 486 0 345 304 52 45 chr4 186612380 186612718 -15715629 - L1ME LINE L1 -1043 5037 4699 1090 279 122 8 chr4 186612730 186613131 -15715216 + LTR40c LTR ERVL 10 456 -9 483 291 84 36 chr4 186613413 186613887 -15714460 - L1ME LINE L1 -2688 3392 2896 270 253 11 74 chr4 186613893 186613988 -15714359 - L1ME LINE L1 -4641 1620 1532 920 235 32 103 chr4 186613990 186614058 -15714289 - MLT1A1 LTR MaLR 0 365 294 2107 100 0 21 chr4 186614058 186614380 -15713967 + AluY SINE Alu 1 316 0 920 235 32 103 chr4 186614380 186614721 -15713626 - MLT1A1 LTR MaLR -71 294 15 986 289 133 46 chr4 186614762 186615983 -15712364 - L1ME LINE L1 -4622 1458 123 438 242 50 0 chr4 186615985 186616105 -15712242 - L1MC3 LINE L1 -923 6862 6737 882 267 18 29 chr4 186616918 186617199 -15711148 - MLT1C LTR MaLR 0 467 190 204 152 0 0 chr4 186617251 186617284 -15711063 - L2 LINE L2 -10 3303 3271 753 193 27 37 chr4 186617346 186617533 -15710814 - MLT1C LTR MaLR -281 186 2 2203 124 40 11 chr4 186617661 186618015 -15710332 - THE1B LTR MaLR 0 364 1 21 82 0 0 chr4 186618088 186618137 -15710210 + AT_rich Low_complexity Low_complexity 1 49 0 31 26 0 0 chr4 186619354 186619392 -15708955 + AT_rich Low_complexity Low_complexity 1 38 0 186 43 0 0 chr4 186619739 186619762 -15708585 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2010 120 3 3 chr4 186619764 186620047 -15708300 - AluSx SINE Alu -29 283 1 1231 184 83 49 chr4 186620914 186621334 -15707013 - MLT2A2 LTR ERVL -2 451 110 303 122 0 0 chr4 186621641 186621690 -15706657 + (CA)n Simple_repeat Simple_repeat 2 50 0 195 152 0 0 chr4 186621980 186622013 -15706334 - L2 LINE L2 -10 3303 3271 273 143 91 39 chr4 186622191 186622300 -15706047 + GA-rich Low_complexity Low_complexity 1 114 0 183 80 0 0 chr4 186622772 186622797 -15705550 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2272 280 120 25 chr4 186622909 186623569 -15704778 + MER69B DNA AcHobo 1 792 -1734 1743 136 87 25 chr4 186623569 186623892 -15704455 - MER61A LTR ERV1 0 343 1 2272 280 120 25 chr4 186623892 186624249 -15704098 + MER69B DNA AcHobo 792 1114 -112 2108 121 0 10 chr4 186624451 186624740 -15703607 - AluSx SINE Alu -26 286 1 721 227 37 50 chr4 186625167 186625239 -15703108 + MER6A DNA MER2_type 2 73 -532 2278 165 40 62 chr4 186625239 186625735 -15702612 - MER66B LTR ERV1 0 486 2 721 227 37 50 chr4 186625735 186625904 -15702443 + MER6A DNA MER2_type 73 240 -365 429 298 0 0 chr4 186625913 186626091 -15702256 + (TG)n Simple_repeat Simple_repeat 2 179 0 485 264 0 11 chr4 186626116 186626298 -15702049 + (TG)n Simple_repeat Simple_repeat 1 180 0 304 85 71 71 chr4 186626311 186626452 -15701895 + (TGAG)n Simple_repeat Simple_repeat 4 144 0 3231 182 34 14 chr4 186626508 186627152 -15701195 + MER6A DNA MER2_type 209 605 0 26 0 0 0 chr4 186627741 186627767 -15700580 + AT_rich Low_complexity Low_complexity 1 26 0 1644 224 13 40 chr4 186627880 186627916 -15700431 - MLT1A1 LTR MaLR 0 365 330 2415 76 0 0 chr4 186627916 186628220 -15700127 - AluY SINE Alu -7 304 1 1644 224 13 40 chr4 186628220 186628558 -15699789 - MLT1A1 LTR MaLR -35 330 1 7301 214 51 34 chr4 186628558 186630257 -15698090 - MLT1A1-int LTR MaLR 0 1735 9 1843 210 14 0 chr4 186630267 186630624 -15697723 - MLT1A1 LTR MaLR -2 363 2 269 357 10 0 chr4 186630648 186630746 -15697601 - L2 LINE L2 0 3272 3174 301 294 119 7 chr4 186631078 186631221 -15697126 - MIR SINE MIR -22 240 82 601 246 50 50 chr4 186631507 186631804 -15696543 + L1MC4 LINE L1 4487 4783 -1363 1083 211 0 127 chr4 186631822 186632168 -15696179 - MLT1A1 LTR MaLR -63 302 1 1864 249 72 28 chr4 186632300 186633074 -15695273 + L1ME2 LINE L1 5341 6148 -16 23 33 0 0 chr4 186634306 186634336 -15694011 + AT_rich Low_complexity Low_complexity 1 30 0 239 299 24 16 chr4 186634451 186634578 -15693769 + L1MC4 LINE L1 4891 5018 -1128 2363 106 3 0 chr4 186634733 186635045 -15693302 + AluSq SINE Alu 1 313 0 1255 221 83 57 chr4 186635177 186635684 -15692663 + L1MC4 LINE L1 5295 5814 -1994 3131 235 65 54 chr4 186635699 186636746 -15691601 + L1MC4 LINE L1 6691 7755 -287 2626 30 3 0 chr4 186636746 186637046 -15691301 - AluY SINE Alu -2 309 9 3131 235 65 54 chr4 186637046 186637191 -15691156 + L1MC4 LINE L1 7755 7897 -145 272 248 0 15 chr4 186637205 186637288 -15691059 + L1MC4 LINE L1 7728 8042 0 29 47 0 0 chr4 186637348 186637391 -15690956 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr4 186639096 186639119 -15689228 + AT_rich Low_complexity Low_complexity 1 23 0 1515 210 11 11 chr4 186639281 186639567 -15688780 - AluJo SINE Alu -26 286 1 405 336 38 58 chr4 186639676 186640239 -15688108 - L2 LINE L2 -940 2374 1776 21 0 0 0 chr4 186640771 186640792 -15687555 + AT_rich Low_complexity Low_complexity 1 21 0 1699 128 0 4 chr4 186641266 186641501 -15686846 + AluSq SINE Alu 13 246 -67 37680 85 13 7 chr4 186641709 186645496 -15682851 - L1PA6 LINE L1 -2 6152 2314 378 0 0 0 chr4 186645496 186645538 -15682809 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 37680 85 13 7 chr4 186645538 186647855 -15680492 - L1PA6 LINE L1 -3840 2314 13 339 333 30 0 chr4 186648599 186648698 -15679649 + MLT-int LTR MaLR 1302 1403 -332 1054 179 46 0 chr4 186648699 186648895 -15679452 + MLT1A2-int LTR MaLR 1512 1716 -19 1700 204 36 11 chr4 186648895 186649253 -15679094 + MLT1A2 LTR MaLR 8 374 0 342 330 81 21 chr4 186649365 186649601 -15678746 + HAL1 LINE L1 2258 2507 0 2426 55 0 7 chr4 186651570 186651879 -15676468 + AluY SINE Alu 1 307 -4 584 172 60 8 chr4 186651882 186652016 -15676331 + FLAM_A SINE Alu 1 141 -1 228 262 36 0 chr4 186652373 186652457 -15675890 + L1ME4a LINE L1 5987 6073 -48 2412 81 10 0 chr4 186652734 186653043 -15675304 - AluSq SINE Alu -1 312 1 488 294 123 54 chr4 186656190 186657149 -15671198 + L1MEc LINE L1 701 1725 -4671 599 174 0 0 chr4 186657212 186657310 -15671037 - Tigger7 DNA MER2_type 0 2491 2394 1379 181 11 23 chr4 186657319 186657579 -15670768 - Tigger7 DNA MER2_type -293 257 1 2303 77 0 7 chr4 186657596 186657894 -15670453 - AluSc SINE Alu -13 296 1 452 322 81 38 chr4 186657917 186658262 -15670085 + L1MEc LINE L1 1867 2226 -4170 22 0 0 0 chr4 186659050 186659072 -15669275 + AT_rich Low_complexity Low_complexity 1 22 0 201 94 0 0 chr4 186660789 186660821 -15667526 + (TA)n Simple_repeat Simple_repeat 2 33 0 1719 199 15 3 chr4 186662640 186662981 -15665366 + MER7A DNA MER2_type 4 346 0 205 265 0 0 chr4 186663207 186663256 -15665091 - L2 LINE L2 0 3313 3265 236 240 0 0 chr4 186663547 186663597 -15664750 + MLT1E2 LTR MaLR 52 101 -525 364 339 23 0 chr4 186763727 186763857 -15564490 + MIR SINE MIR 20 152 -110 349 276 26 17 chr4 186764626 186764742 -15563605 - MIR SINE MIR 0 262 146 384 301 104 44 chr4 186764930 186765274 -15563073 + L1MC4a LINE L1 5580 5942 -222 513 290 161 4 chr4 186765334 186765589 -15562758 + L2 LINE L2 1754 2048 -1266 243 266 64 46 chr4 186765651 186765760 -15562587 + L2 LINE L2 2169 2279 -1035 238 391 23 8 chr4 186765773 186765906 -15562441 + L2 LINE L2 2551 2685 -629 498 159 34 0 chr4 186766253 186766341 -15562006 + MLT1A1 LTR MaLR 272 362 -3 265 262 200 0 chr4 186766378 186766523 -15561824 - L1ME LINE L1 -340 5781 5608 795 278 50 97 chr4 186766978 186767421 -15560926 - MLT1J LTR MaLR -1 510 89 344 340 21 21 chr4 186768255 186768399 -15559948 + MER90 LTR ERV1 423 566 -9 8084 87 3 3 chr4 186768615 186769748 -15558599 - L1P LINE L1 -1910 4236 3105 741 87 17 0 chr4 186769747 186769862 -15558485 + L1P LINE L1 4260 4376 -1770 * 2364 182 52 42 chr4 186769963 186770648 -15557699 - L1MC/D LINE L1 -544 5789 5101 1758 157 10 10 chr4 186770649 186770954 -15557393 - AluJb SINE Alu 0 312 8 247 272 91 73 chr4 186771416 186771648 -15556699 - L1ME2 LINE L1 -9 6155 5920 1005 243 181 19 chr4 186771681 186772232 -15556115 - L1MC/D LINE L1 -3054 3092 2429 1869 144 14 0 chr4 186772232 186772516 -15555831 - AluSq SINE Alu -25 288 1 1005 243 181 19 chr4 186772516 186772582 -15555765 - L1MC/D LINE L1 -3717 2429 2375 967 155 62 16 chr4 186773041 186773235 -15555112 + L1MA2 LINE L1 6054 6256 -48 2969 166 70 74 chr4 186773236 186774139 -15554208 - LTR1 LTR ERV1 0 785 2 509 198 9 36 chr4 186774165 186774276 -15554071 - MLT1A1 LTR MaLR -254 111 4 4149 47 4 0 chr4 186774300 186774816 -15553531 - L1PA5 LINE L1 -1267 4879 4362 6893 48 29 0 chr4 186774820 186776077 -15552270 + L1PA5 LINE L1 4873 6153 -1 3047 110 126 22 chr4 186777806 186778362 -15549985 + LTR18B LTR ERVL 1 614 0 2256 101 0 0 chr4 186778806 186779102 -15549245 + AluSc SINE Alu 1 296 -13 243 262 47 9 chr4 186779427 186779534 -15548813 - L1M LINE L1 -745 5401 5317 2292 97 0 0 chr4 186780171 186780514 -15547833 + AluY SINE Alu 1 343 0 2233 119 0 3 chr4 186780803 186781113 -15547234 + AluSx SINE Alu 1 309 -3 507 216 62 68 chr4 186781652 186781814 -15546533 + MER5B DNA MER1_type 18 178 0 1669 173 64 9 chr4 186781999 186782328 -15546019 + MER7A DNA MER2_type 1 345 -1 1108 152 126 0 chr4 186783196 186783394 -15544953 - MLT1D LTR MaLR 0 505 283 4761 173 16 6 chr4 186783550 186785107 -15543240 + L1P5 LINE L1 4214 5782 -369 231 114 0 0 chr4 186785107 186785142 -15543205 + (TG)n Simple_repeat Simple_repeat 2 36 0 4761 173 16 6 chr4 186785142 186785154 -15543193 + L1P5 LINE L1 5782 5792 -359 2140 105 0 43 chr4 186785566 186785890 -15542457 - AluSx SINE Alu -2 310 1 936 222 39 21 chr4 186787302 186787536 -15540811 + MSTB LTR MaLR 1 238 -188 1069 188 89 38 chr4 186787937 186788229 -15540118 - LTR52 LTR ERVL -105 316 10 456 285 101 43 chr4 186788229 186788646 -15539701 - L1M4 LINE L1 -1169 4977 4537 736 120 33 33 chr4 186788659 186788809 -15539538 + L1MB1 LINE L1 6017 6166 -2 180 0 0 0 chr4 186788813 186788833 -15539514 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 29358 27 1 0 chr4 186788834 186793134 -15535213 - L1PA3 LINE L1 -12 6143 1842 25 31 0 0 chr4 186794194 186794226 -15534121 + AT_rich Low_complexity Low_complexity 1 32 0 32 0 0 0 chr4 186794307 186794339 -15534008 + AT_rich Low_complexity Low_complexity 1 32 0 305 274 113 47 chr4 186794498 186794710 -15533637 + L1ME LINE L1 5388 5613 -508 1441 220 47 38 chr4 186795431 186795877 -15532470 - L1MD3 LINE L1 -852 7143 6694 238 111 83 111 chr4 186795862 186795934 -15532413 + L1MC4a LINE L1 7085 7154 -654 * 267 245 0 0 chr4 186796049 186796102 -15532245 + MLT1F1 LTR MaLR 73 125 -442 1902 210 81 62 chr4 186796102 186796669 -15531678 + L1MD3 LINE L1 7404 7981 -14 267 320 120 39 chr4 186801406 186801640 -15526707 - MIR SINE MIR -6 256 4 1888 184 12 6 chr4 186802724 186803056 -15525291 + MLT2B3 LTR ERVL 3 336 -218 641 163 0 59 chr4 186803056 186803191 -15525156 + MLT2A2 LTR ERVL 1 127 -326 668 156 30 7 chr4 186803292 186803427 -15524920 + MLT2B3 LTR ERVL 367 504 -11 822 314 71 84 chr4 186804651 186804769 -15523578 + ERVL LTR ERVL 1904 2022 -3742 1276 252 60 108 chr4 186804769 186805456 -15522891 + MLT1E1 LTR MaLR 1 654 0 822 314 71 84 chr4 186805456 186805529 -15522818 + ERVL LTR ERVL 2022 2094 -3670 2075 114 3 3 chr4 186805529 186805826 -15522521 + AluSc SINE Alu 1 297 -12 822 314 71 84 chr4 186805826 186806410 -15521937 + ERVL LTR ERVL 2094 2670 -3094 1344 363 54 35 chr4 186806519 186807901 -15520446 + ERVL LTR ERVL 2838 4286 -1464 4429 251 117 24 chr4 186809548 186810843 -15517504 - L1ME1 LINE L1 -10 6156 4983 1912 138 34 55 chr4 186810843 186811226 -15517121 + THE1C LTR MaLR 1 375 0 4429 251 117 24 chr4 186811226 186813121 -15515226 - L1ME1 LINE L1 -1183 4983 2663 2845 123 25 15 chr4 186813144 186813616 -15514731 - L1MB2 LINE L1 -36 6135 5659 986 277 61 22 chr4 186813635 186814130 -15514217 - L1ME1 LINE L1 -3515 2631 2118 470 35 0 0 chr4 186814296 186814353 -15513994 + THE1C LTR MaLR 1 57 -318 241 67 0 0 chr4 186814453 186814483 -15513864 + THE1C LTR MaLR 346 375 0 21 0 0 0 chr4 186814968 186814989 -15513358 + AT_rich Low_complexity Low_complexity 1 21 0 415 126 27 18 chr4 186815067 186815178 -15513169 + (TA)n Simple_repeat Simple_repeat 1 112 0 1898 126 29 4 chr4 186815182 186815460 -15512887 - AluY SINE Alu -26 285 1 21 36 0 0 chr4 186815508 186815536 -15512811 + AT_rich Low_complexity Low_complexity 1 28 0 270 81 0 0 chr4 186816469 186816506 -15511841 + (TG)n Simple_repeat Simple_repeat 2 38 0 616 272 91 28 chr4 186816740 186817175 -15511172 + MLT1G1 LTR MaLR 1 486 -104 430 53 0 0 chr4 186817287 186817344 -15511003 - L1P LINE L1 -4453 1693 1637 22 35 0 0 chr4 186817354 186817383 -15510964 + AT_rich Low_complexity Low_complexity 1 29 0 590 177 35 9 chr4 186817812 186817925 -15510422 - FLAM_A SINE Alu -21 121 6 331 273 24 61 chr4 186818221 186818386 -15509961 - L1M4 LINE L1 -1888 4258 4100 209 141 90 0 chr4 186818737 186818815 -15509532 + (TA)n Simple_repeat Simple_repeat 2 86 0 760 189 0 0 chr4 186819087 186819219 -15509128 + FLAM_C SINE Alu 1 132 -1 637 239 68 6 chr4 186820070 186820233 -15508114 + MER58B DNA MER1_type 169 341 0 312 243 153 27 chr4 186820371 186820482 -15507865 - MLT1L LTR MaLR -122 493 369 305 309 121 13 chr4 186820530 186820679 -15507668 - MLT1L LTR MaLR -315 300 136 330 251 104 84 chr4 186820852 186821103 -15507244 - MLT1H LTR MaLR -287 262 7 2220 76 48 0 chr4 186821623 186821914 -15506433 - AluY SINE Alu -6 305 1 1735 232 63 18 chr4 186823188 186823632 -15504715 - MLT1C LTR MaLR -1 466 3 295 272 61 61 chr4 186823682 186823829 -15504518 - MIR3 SINE MIR -39 169 23 712 194 35 15 chr4 186825485 186825712 -15502635 + MER89 LTR ERV1 2 332 -227 904 191 17 1 chr4 186826512 186826700 -15501647 + MSTB1 LTR MaLR 222 428 -2 5052 85 13 1 chr4 186826729 186827443 -15500904 + LTR30 LTR ERV1 1 722 0 200 330 183 37 chr4 186827530 186827879 -15500468 - L2 LINE L2 -337 2977 2578 441 0 0 0 chr4 186827885 186827934 -15500413 + (CA)n Simple_repeat Simple_repeat 1 49 0 2267 159 47 5 chr4 186829960 186830369 -15497978 - MSTB LTR MaLR 0 426 1 21 0 0 0 chr4 186833052 186833073 -15495274 + AT_rich Low_complexity Low_complexity 1 21 0 647 98 41 8 chr4 186833737 186833860 -15494487 + AluSc SINE Alu 153 279 -30 2391 231 96 10 chr4 186834580 186835177 -15493170 + MER82 DNA MER2_type 1 648 -5 259 297 0 27 chr4 186835317 186835391 -15492956 - MIR SINE MIR -10 252 181 303 322 27 47 chr4 186836989 186837138 -15491209 - L2 LINE L2 0 3272 3127 24 77 0 0 chr4 186837747 186837799 -15490548 + AT_rich Low_complexity Low_complexity 1 52 0 23 33 0 0 chr4 186837964 186837994 -15490353 + AT_rich Low_complexity Low_complexity 1 30 0 235 279 87 19 chr4 186839010 186839114 -15489233 + L2 LINE L2 3199 3309 -4 198 275 145 0 chr4 186839974 186840043 -15488304 + L2 LINE L2 3168 3246 -26 1551 156 60 34 chr4 186840753 186841212 -15487135 - MER51A LTR ERV1 0 634 1 955 190 158 0 chr4 186842524 186842803 -15485544 + MER33 DNA MER1_type 2 324 0 340 281 60 65 chr4 186844732 186844917 -15483430 - MIR SINE MIR -77 185 2 799 281 127 4 chr4 186848107 186848367 -15479980 - MLT1D LTR MaLR -213 292 1 553 343 24 28 chr4 186848614 186848862 -15479485 - MIR SINE MIR -10 252 6 436 318 129 20 chr4 186849378 186849579 -15478768 - MIR SINE MIR -14 248 26 2155 119 0 26 chr4 186849779 186850090 -15478257 + AluSg SINE Alu 1 303 -7 975 187 16 0 chr4 186850367 186850554 -15477793 + MER2 DNA MER2_type 22 211 -134 2028 112 42 3 chr4 186850561 186850848 -15477499 - AluSg SINE Alu -12 298 1 911 247 31 31 chr4 186850908 186851131 -15477216 + Tigger7 DNA MER2_type 7 229 -476 559 186 20 0 chr4 186851137 186851239 -15477108 + Tigger7 DNA MER2_type 2386 2489 -2 1333 231 63 3 chr4 186851308 186851658 -15476689 - L1ME1 LINE L1 -5 6161 5791 934 243 68 39 chr4 186852551 186852888 -15475459 + L1MCc LINE L1 38 384 -6039 1378 118 14 19 chr4 186852931 186853143 -15475204 + AluSq SINE Alu 3 213 -100 270 135 0 0 chr4 186853153 186853190 -15475157 + Tigger2 DNA MER2_type 1 37 -2681 1500 139 0 0 chr4 186853267 186853482 -15474865 + AluSg/x SINE Alu 81 295 -15 309 335 73 11 chr4 186853702 186853893 -15474454 + ERVL LTR ERVL 2391 2593 -3171 791 327 55 23 chr4 186853935 186854281 -15474066 + ERVL LTR ERVL 4041 4397 -1367 * 1045 302 89 30 chr4 186854277 186855018 -15473329 + ERVL LTR ERVL 2603 3387 -2267 2324 76 0 0 chr4 186855050 186855338 -15473009 + AluY SINE Alu 3 290 -21 413 338 69 9 chr4 186855387 186855603 -15472744 + ERVL LTR ERVL 3439 3667 -1987 1614 322 67 30 chr4 186855685 186856471 -15471876 + ERVL LTR ERVL 3792 4606 -1158 722 230 7 17 chr4 186856474 186856766 -15471581 + MLT1A1 LTR MaLR 1 365 0 2331 95 3 0 chr4 186857565 186857870 -15470477 + AluSx SINE Alu 1 306 -6 1898 129 24 3 chr4 186858181 186858468 -15469879 + AluSx SINE Alu 4 296 -16 28 29 0 0 chr4 186858762 186858797 -15469550 + AT_rich Low_complexity Low_complexity 1 35 0 367 294 48 32 chr4 186858909 186859157 -15469190 + L1 LINE L1 2177 2428 -3718 260 328 59 0 chr4 186859622 186859741 -15468606 + ERVL LTR ERVL 4740 4865 -899 775 203 70 0 chr4 186859755 186859913 -15468434 - LTR52 LTR ERVL -25 396 228 262 180 20 0 chr4 186859951 186860001 -15468346 - MLT1A1 LTR MaLR -218 147 97 * 702 221 30 74 chr4 186859993 186860224 -15468123 - LTR52 LTR ERVL -200 221 1 2117 104 24 0 chr4 186860591 186860889 -15467458 - AluSp SINE Alu -7 306 2 633 334 75 35 chr4 186861686 186862087 -15466260 - LTR33 LTR ERVL -75 446 30 435 240 147 20 chr4 186862188 186862392 -15465955 + L1ME LINE L1 5595 5824 -297 1321 117 5 5 chr4 186862392 186862597 -15465750 - Tigger7 DNA MER2_type -9 2482 2278 * 1616 201 46 3 chr4 186862595 186862918 -15465429 - Tigger7 DNA MER2_type -2048 439 103 230 269 34 0 chr4 186863042 186863161 -15465186 + (TA)n Simple_repeat Simple_repeat 1 123 0 1746 123 22 83 chr4 186863166 186863353 -15464994 - AluJb SINE Alu -8 304 144 2256 104 0 0 chr4 186863353 186863642 -15464705 - AluSx SINE Alu -23 289 1 1746 123 22 83 chr4 186863642 186863778 -15464569 - AluJb SINE Alu -168 144 1 1995 98 0 0 chr4 186863789 186864054 -15464293 - AluSg1 SINE Alu 0 309 45 22 0 0 0 chr4 186865937 186865959 -15462388 + AT_rich Low_complexity Low_complexity 1 22 0 2219 114 0 0 chr4 186866182 186866481 -15461866 - AluSq SINE Alu -6 307 9 7005 61 16 3 chr4 186866501 186868154 -15460193 - L1PA7 LINE L1 -3 6151 4488 8851 173 43 14 chr4 186868269 186870578 -15457769 - L1MA6 LINE L1 -49 6251 3839 2006 133 24 58 chr4 186870578 186870955 -15457392 - THE1B LTR MaLR 0 364 1 8851 173 43 14 chr4 186870955 186871353 -15456994 - L1MA6 LINE L1 -2461 3839 3454 1717 182 114 8 chr4 186871354 186871837 -15456510 + L1MA6 LINE L1 2929 3462 -2684 1107 177 0 44 chr4 186871877 186872080 -15456267 - AluJb SINE Alu -22 290 97 2073 206 85 35 chr4 186872113 186873075 -15455272 - Tigger6 DNA MER2_type -5 1592 2 339 25 0 0 chr4 186873076 186873116 -15455231 + (TG)n Simple_repeat Simple_repeat 1 40 0 22 35 0 0 chr4 186873599 186873628 -15454719 + AT_rich Low_complexity Low_complexity 1 29 0 260 353 29 0 chr4 186873861 186873963 -15454384 - MIR3 SINE MIR -3 205 101 284 314 50 20 chr4 186874047 186874236 -15454111 - MIR SINE MIR -62 200 7 1897 119 49 11 chr4 186875100 186875385 -15452962 + AluSq SINE Alu 3 298 -15 2036 150 0 0 chr4 186876504 186876797 -15451550 - AluSx SINE Alu -19 293 1 1798 181 27 12 chr4 186878058 186878389 -15449958 - MER1B DNA MER1_type 0 337 2 1388 214 17 17 chr4 186878645 186878940 -15449407 - AluJo SINE Alu -17 295 1 330 345 109 11 chr4 186878957 186879131 -15449216 + MIR SINE MIR 15 205 -57 2173 116 0 0 chr4 186881771 186882056 -15446291 - AluSx SINE Alu -24 288 4 7812 173 51 24 chr4 186882222 186883707 -15444640 + MER52A LTR ERV1 231 1755 0 322 212 77 123 chr4 186883707 186883861 -15444486 - MLT1B LTR MaLR -244 146 1 313 313 174 42 chr4 186883943 186884048 -15444299 + L2 LINE L2 2071 2161 -1153 3297 176 58 7 chr4 186884048 186884724 -15443623 + MER67C LTR ERV1 1 710 0 313 313 174 42 chr4 186884724 186884928 -15443419 + L2 LINE L2 2161 2421 -893 21 0 0 0 chr4 186884982 186885003 -15443344 + AT_rich Low_complexity Low_complexity 1 21 0 1843 299 40 67 chr4 186885929 186886564 -15441783 - L2 LINE L2 -20 3293 2711 1824 157 7 10 chr4 186886564 186886870 -15441477 + AluSq SINE Alu 1 305 -8 1843 299 40 67 chr4 186886870 186887525 -15440822 - L2 LINE L2 -602 2711 2040 298 216 49 78 chr4 186887650 186887752 -15440595 + MER45 DNA AcHobo 16 114 -926 266 322 176 15 chr4 186888138 186888337 -15440010 + MIR SINE MIR 31 261 -1 328 303 33 8 chr4 186888624 186888746 -15439601 - L1MC4a LINE L1 -1871 5937 5813 1529 132 82 63 chr4 186889219 186889537 -15438810 + MLT1B LTR MaLR 1 324 -66 309 266 97 45 chr4 186889952 186890106 -15438241 - L1MC4a LINE L1 -1824 4322 4161 350 266 155 31 chr4 186890243 186890469 -15437878 - L1MC4a LINE L1 -2201 3945 3692 819 280 71 92 chr4 186890622 186891641 -15436706 + L1MEc LINE L1 102 1098 -5298 292 261 0 0 chr4 186891651 186891739 -15436608 + L1ME1 LINE L1 6075 6162 -4 27 73 0 0 chr4 186892101 186892156 -15436191 + AT_rich Low_complexity Low_complexity 1 55 0 328 279 103 50 chr4 186892717 186893076 -15435271 + L1MC5 LINE L1 7311 7688 -273 25 0 0 0 chr4 186893347 186893372 -15434975 + AT_rich Low_complexity Low_complexity 1 25 0 2648 242 52 8 chr4 186894793 186895507 -15432840 - L1ME1 LINE L1 -7 6159 5415 4700 152 20 16 chr4 186896593 186897479 -15430868 - L1MA6 LINE L1 0 6300 5411 241 370 30 52 chr4 186897703 186897838 -15430509 - L2 LINE L2 0 3272 3141 222 299 34 82 chr4 186899878 186900025 -15428322 - L2 LINE L2 -56 3257 3118 3276 179 33 4 chr4 186901003 186901692 -15426655 + L1MB1 LINE L1 4471 5179 -967 263 216 39 0 chr4 186901697 186901748 -15426599 + Tigger5 DNA MER2_type 1 53 -2270 462 202 11 0 chr4 186901757 186901846 -15426501 + Tigger5 DNA MER2_type 2234 2323 0 4332 181 23 9 chr4 186901856 186902803 -15425544 + L1MB1 LINE L1 5193 6154 -14 2132 52 48 4 chr4 186903332 186903629 -15424718 + AluY SINE Alu 1 309 0 1435 241 147 71 chr4 186903727 186904457 -15423890 - LTR1B LTR ERV1 -41 785 1 2218 70 0 14 chr4 186904731 186905039 -15423308 + AluY SINE Alu 1 304 0 223 267 0 0 chr4 186907361 186907406 -15420941 + MIR SINE MIR 48 92 -170 1739 159 48 17 chr4 186910375 186910726 -15417621 - L1MC1 LINE L1 -5 6328 5967 2396 85 0 0 chr4 186910735 186911040 -15417307 - AluSc SINE Alu 0 309 5 21 36 0 0 chr4 186911227 186911255 -15417092 + AT_rich Low_complexity Low_complexity 1 28 0 1619 189 10 13 chr4 186911411 186911713 -15416634 + AluJb SINE Alu 1 301 -11 1847 271 62 30 chr4 186912147 186912986 -15415361 - L1M4 LINE L1 -1769 4377 3512 1254 119 17 64 chr4 186913560 186913795 -15414552 - L1MC1 LINE L1 0 6333 6110 315 269 66 48 chr4 186913899 186913949 -15414398 - L1MCc LINE L1 -4492 2630 2582 1956 144 13 0 chr4 186913949 186914255 -15414092 + AluSx SINE Alu 1 310 -2 315 269 66 48 chr4 186914255 186914371 -15413976 - L1MCc LINE L1 -4540 2582 2461 446 149 0 0 chr4 186914448 186914515 -15413832 - AluS SINE Alu -243 67 1 389 281 92 39 chr4 186914521 186915240 -15413107 - L1MCc LINE L1 -4861 2261 1288 369 0 0 0 chr4 186915572 186915613 -15412734 + (TG)n Simple_repeat Simple_repeat 1 41 0 410 330 124 9 chr4 186916303 186916536 -15411811 - MIR SINE MIR 0 262 3 1957 106 11 3 chr4 186917374 186917657 -15410690 + AluSx SINE Alu 4 288 -24 248 270 42 74 chr4 186920371 186920560 -15407787 - MER112 DNA MER1_type -6 254 72 605 307 144 48 chr4 186920960 186921647 -15406700 - L2 LINE L2 -16 3297 2545 2123 178 62 19 chr4 186921741 186922392 -15405955 + MER72 LTR ERV1 10 722 0 21 0 0 0 chr4 186922427 186922448 -15405899 + AT_rich Low_complexity Low_complexity 1 21 0 341 261 34 0 chr4 186922463 186922551 -15405796 - L2 LINE L2 -944 2370 2280 1443 334 153 39 chr4 186922792 186924206 -15404141 - L2 LINE L2 -1124 2190 615 199 314 0 0 chr4 186924622 186924673 -15403674 - L2 LINE L2 0 3313 3263 2074 115 3 10 chr4 186924687 186924983 -15403364 - AluSx SINE Alu 0 312 19 228 169 0 119 chr4 186925107 186925166 -15403181 + LTR30 LTR ERV1 1 52 -670 2617 87 151 177 chr4 186925166 186925845 -15402502 + LTR12 LTR ERV1 57 2383 -55 3574 243 56 25 chr4 186925948 186928187 -15400160 - L1MC1 LINE L1 -350 6263 3878 462 159 11 23 chr4 186928186 186928274 -15400073 - L1MC1 LINE L1 -4794 1632 1546 * 793 118 8 16 chr4 186928286 186928413 -15399934 + LTR1 LTR ERV1 660 785 0 6121 184 40 21 chr4 186928413 186929723 -15398624 - L1MC1 LINE L1 -5071 1355 20 2243 92 0 0 chr4 186932260 186932575 -15395772 - AluSx SINE Alu 0 315 1 365 259 89 0 chr4 186932851 186932963 -15395384 - LTR16C LTR ERVL -2 489 368 231 397 32 16 chr4 186933145 186933271 -15395076 + MER5A DNA MER1_type 59 186 -3 * 305 318 18 18 chr4 186933177 186933287 -15395060 - MER5A DNA MER1_type -78 111 2 363 218 13 0 chr4 186933438 186933516 -15394831 + U13 snRNA snRNA 2 80 -24 2432 114 17 3 chr4 186933719 186934078 -15394269 - THE1B LTR MaLR 0 364 1 328 346 103 20 chr4 186934234 186934526 -15393821 + L2 LINE L2 200 515 -2799 239 328 62 39 chr4 186934657 186934785 -15393562 + L2 LINE L2 1899 2029 -1285 201 256 198 35 chr4 186936856 186936942 -15391405 - MIR3 SINE MIR -100 108 9 21 57 0 0 chr4 186937350 186937385 -15390962 + AT_rich Low_complexity Low_complexity 1 35 0 541 264 81 6 chr4 186938023 186938197 -15390150 - MER5A DNA MER1_type -2 187 1 518 308 178 9 chr4 186938205 186938419 -15389928 + MIR SINE MIR 12 261 -1 27 29 0 0 chr4 186938462 186938496 -15389851 + AT_rich Low_complexity Low_complexity 1 34 0 361 381 169 9 chr4 186938530 186938974 -15389373 + L3 LINE CR1 1052 1566 -11 2177 114 7 0 chr4 186939682 186939988 -15388359 - AluSp SINE Alu -2 311 4 345 276 167 14 chr4 186941043 186941089 -15387258 - MIR SINE MIR -7 255 217 2203 74 10 17 chr4 186941089 186941385 -15386962 - AluY SINE Alu -17 294 1 345 276 167 14 chr4 186941385 186941559 -15386788 - MIR SINE MIR -45 217 1 360 294 78 74 chr4 186941847 186942116 -15386231 + MLT1J LTR MaLR 235 504 -7 289 364 0 0 chr4 186942360 186942470 -15385877 + MER94 DNA DNA 25 134 0 549 311 65 35 chr4 186944444 186944933 -15383414 - L1ME2 LINE L1 -212 5952 5449 2221 104 3 16 chr4 186995927 186996234 -15332113 + AluSq SINE Alu 1 303 -10 26 0 0 0 chr4 186996318 186996344 -15332003 + AT_rich Low_complexity Low_complexity 1 26 0 2468 60 0 28 chr4 186996624 186996943 -15331404 + AluY SINE Alu 1 310 -1 627 135 0 0 chr4 186997114 186997210 -15331137 + AluSg/x SINE Alu 131 226 -86 2121 106 7 0 chr4 186997337 186997620 -15330727 - AluSp SINE Alu -18 295 11 590 247 16 21 chr4 186998264 186998454 -15329893 + HAL1b LINE L1 320 508 -840 334 233 75 45 chr4 186998511 186998644 -15329703 + HAL1b LINE L1 603 739 -609 452 257 120 17 chr4 186998660 186998835 -15329512 - MIR SINE MIR -26 236 44 637 237 131 48 chr4 186999389 186999726 -15328621 - L1ME3A LINE L1 -31 6139 5775 259 233 35 0 chr4 186999786 186999872 -15328475 + (TA)n Simple_repeat Simple_repeat 1 89 0 344 309 0 0 chr4 187000226 187000323 -15328024 - MLT1-int LTR MaLR -853 518 422 805 273 89 24 chr4 187000573 187001082 -15327265 - MLT1G1 LTR MaLR 0 595 9 243 331 48 0 chr4 187001156 187001301 -15327046 - L1ME3A LINE L1 -456 5714 5563 22 35 0 0 chr4 187001349 187001378 -15326969 + AT_rich Low_complexity Low_complexity 1 29 0 2136 111 0 3 chr4 187001378 187001666 -15326681 - AluSx SINE Alu -25 287 1 10194 133 23 28 chr4 187001666 187003256 -15325091 + Tigger1 DNA MER2_type 45 1625 -793 4277 29 6 0 chr4 187003256 187003767 -15324580 + L1PA4 LINE L1 5640 6153 -2 10194 133 23 28 chr4 187003767 187004558 -15323789 + Tigger1 DNA MER2_type 1625 2418 0 4149 81 2 2 chr4 187004728 187005299 -15323048 - L1P LINE L1 -962 5184 4614 * 9313 95 8 0 chr4 187005292 187006610 -15321737 + L1P LINE L1 3267 4595 -1551 2483 250 39 20 chr4 187006610 187007894 -15320453 - L1M4 LINE L1 -3102 3280 1973 2637 257 59 48 chr4 187007897 187009835 -15318512 - L1 LINE L1 -3437 4128 2178 239 159 0 23 chr4 187009857 187009901 -15318446 - MLT2D LTR ERVL -204 210 168 590 247 14 7 chr4 187009924 187009944 -15318403 - Ricksha DNA DNA -1674 372 352 4493 211 76 3 chr4 187009944 187010908 -15317439 - ERVL LTR ERVL 0 5764 4731 31 0 0 0 chr4 187012441 187012472 -15315875 + AT_rich Low_complexity Low_complexity 1 31 0 1316 169 60 4 chr4 187012472 187012738 -15315609 + L1MA9 LINE L1 5994 6274 -38 578 267 15 29 chr4 187012971 187013178 -15315169 - L1MD3 LINE L1 -38 7957 6123 977 140 0 0 chr4 187013178 187013314 -15315033 - AluSq SINE Alu -93 220 85 628 191 0 29 chr4 187013675 187013811 -15314536 - L1PA16 LINE L1 -1 6165 6034 210 279 15 0 chr4 187014424 187014492 -15313855 + A-rich Low_complexity Low_complexity 1 69 0 2071 111 0 0 chr4 187014554 187014879 -15313468 - AluSg SINE Alu 0 325 1 21 0 0 0 chr4 187015051 187015072 -15313275 + AT_rich Low_complexity Low_complexity 1 21 0 320 151 41 0 chr4 187015743 187015816 -15312531 - MSTC LTR MaLR -6 422 347 2318 57 36 7 chr4 187015850 187016151 -15312196 + AluY SINE Alu 1 310 -1 1186 65 13 0 chr4 187016645 187016799 -15311548 + AluY SINE Alu 154 309 -2 504 164 66 0 chr4 187017672 187017794 -15310553 - L1MB7 LINE L1 -19 6165 6036 5925 227 89 60 chr4 187017794 187021321 -15307026 - L1MB7 LINE L1 -48 6634 3003 2360 91 3 3 chr4 187021368 187021677 -15306670 + AluSp SINE Alu 1 309 -4 236 211 0 0 chr4 187021681 187021733 -15306614 - L1MB7 LINE L1 -3758 2886 2835 605 312 43 22 chr4 187021751 187022254 -15306093 - L1MB7 LINE L1 -3868 2776 2264 654 234 30 47 chr4 187022317 187022552 -15305795 - L1MB7 LINE L1 -4873 1669 1439 * 1552 244 34 42 chr4 187022546 187023017 -15305330 - L1MB7 LINE L1 -6056 486 20 544 290 69 127 chr4 187023712 187024192 -15304155 + MLT1H1 LTR MaLR 102 553 -2 342 253 115 29 chr4 187024217 187024391 -15303956 - L1MC/D LINE L1 -873 5486 5298 228 35 0 0 chr4 187024855 187024884 -15303463 + (CA)n Simple_repeat Simple_repeat 2 30 0 304 317 83 38 chr4 187024978 187025218 -15303129 - LTR41 LTR ERVL -6 767 517 581 228 105 12 chr4 187025883 187026045 -15302302 - LTR41 LTR ERVL -596 177 1 276 270 11 22 chr4 187026048 187026137 -15302210 - MLT1H LTR MaLR -407 142 55 328 317 19 25 chr4 187027970 187028131 -15300216 - MLT1H LTR MaLR -382 167 8 316 287 190 11 chr4 187028309 187028483 -15299864 - L1MEc LINE L1 -4079 2317 2113 283 297 49 27 chr4 187028702 187028887 -15299460 - L1MEc LINE L1 -4579 1817 1629 2296 75 14 0 chr4 187029477 187029771 -15298576 + AluSp SINE Alu 1 298 -15 25 0 0 0 chr4 187030020 187030045 -15298302 + AT_rich Low_complexity Low_complexity 1 25 0 243 355 187 0 chr4 187030922 187031029 -15297318 + L2 LINE L2 3144 3270 -2 222 37 0 0 chr4 187032076 187032103 -15296244 + (TG)n Simple_repeat Simple_repeat 2 28 0 189 95 48 48 chr4 187033542 187033584 -15294763 + MER5A DNA MER1_type 130 171 -18 226 238 36 24 chr4 187034299 187034383 -15293964 - L1MC4 LINE L1 -1330 6712 6628 315 0 0 0 chr4 187034396 187034431 -15293916 + (TG)n Simple_repeat Simple_repeat 2 36 0 334 288 12 63 chr4 187035011 187035237 -15293110 - MER91B DNA MER1_type -7 183 10 242 287 106 0 chr4 187035257 187035351 -15292996 + MIR SINE MIR 81 184 -78 691 268 26 57 chr4 187035489 187035717 -15292630 - MER58A DNA MER1_type 0 224 4 204 313 9 35 chr4 187035902 187036017 -15292330 + T-rich Low_complexity Low_complexity 2 113 0 2419 69 0 20 chr4 187036861 187037166 -15291181 + AluY SINE Alu 1 299 -12 1929 130 9 41 chr4 187037329 187037444 -15290903 - MER47A DNA MER2_type -1970 353 236 2338 191 47 98 chr4 187037444 187038114 -15290233 - LTR1B LTR ERV1 -2 824 206 1981 142 3 7 chr4 187038114 187038410 -15289937 - AluSx SINE Alu -14 298 4 2338 191 47 98 chr4 187038410 187038605 -15289742 - LTR1B LTR ERV1 -620 206 3 1929 130 9 41 chr4 187038605 187038834 -15289513 - MER47A DNA MER2_type -2087 236 20 24 32 0 0 chr4 187039142 187039173 -15289174 + AT_rich Low_complexity Low_complexity 1 31 0 302 308 11 0 chr4 187039627 187039718 -15288629 - L2 LINE L2 0 3313 3222 23 33 0 0 chr4 187040640 187040670 -15287677 + AT_rich Low_complexity Low_complexity 1 30 0 39 50 0 0 chr4 187040927 187040987 -15287360 + AT_rich Low_complexity Low_complexity 1 60 0 571 268 34 14 chr4 187041223 187041432 -15286915 - L1 LINE L1 -3738 2408 2196 * 2016 192 20 9 chr4 187041421 187041840 -15286507 - L1MC4 LINE L1 -419 5764 5378 544 217 107 43 chr4 187041824 187042151 -15286196 - L1 LINE L1 -2770 3376 3029 * 6491 50 34 9 chr4 187042167 187043219 -15285128 - L1PA7 LINE L1 -3 6151 5075 31 58 0 0 chr4 187044959 187045011 -15283336 + AT_rich Low_complexity Low_complexity 1 52 0 309 219 0 0 chr4 187045435 187045499 -15282848 + L1MC4 LINE L1 6640 6703 -1339 262 107 0 67 chr4 187045582 187045657 -15282690 + (TA)n Simple_repeat Simple_repeat 1 70 0 190 268 0 0 chr4 187045916 187045957 -15282390 + L2 LINE L2 3179 3219 -94 350 41 0 20 chr4 187046028 187046077 -15282270 + (TA)n Simple_repeat Simple_repeat 2 49 0 2116 100 3 23 chr4 187046928 187047228 -15281119 - AluSg SINE Alu -16 294 1 26 0 0 0 chr4 187047418 187047444 -15280903 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr4 187047786 187047824 -15280523 + AT_rich Low_complexity Low_complexity 1 38 0 454 276 121 37 chr4 187049466 187049763 -15278584 - L1ME3A LINE L1 -243 5921 5600 418 282 158 38 chr4 187049928 187050194 -15278153 - L1MCc LINE L1 -5973 450 153 1351 170 3 91 chr4 187050198 187050527 -15277820 - AluJo SINE Alu -2 310 11 331 127 95 0 chr4 187050548 187050611 -15277736 - L1MA8 LINE L1 -37 6254 6186 401 290 78 36 chr4 187054115 187054308 -15274039 - MIR SINE MIR -34 228 28 381 335 24 18 chr4 187054345 187054509 -15273838 + MIR SINE MIR 63 227 -35 283 200 10 20 chr4 187057485 187057585 -15270762 + CT-rich Low_complexity Low_complexity 5 103 0 533 301 25 31 chr4 187060142 187060338 -15268009 + L2 LINE L2 3111 3305 -8 187 341 141 0 chr4 187061550 187061635 -15266712 - L3b LINE CR1 -27 1556 1460 185 293 52 17 chr4 187061798 187061856 -15266491 + MIR SINE MIR 92 151 -57 370 315 60 13 chr4 187061941 187062090 -15266257 + Charlie8 DNA MER1_type 63 218 -2199 7403 24 9 2 chr4 187062161 187063673 -15264674 + L1PA4 LINE L1 4632 6149 -6 595 226 23 23 chr4 187063678 187063855 -15264492 + L1M4 LINE L1 4899 5075 -1071 1094 302 75 42 chr4 187064326 187065161 -15263186 + Charlie8 DNA MER1_type 393 1255 -1162 23 33 0 0 chr4 187065305 187065335 -15263012 + AT_rich Low_complexity Low_complexity 1 30 0 542 327 172 23 chr4 187065483 187066217 -15262130 + Charlie8 DNA MER1_type 1542 2384 -33 213 185 0 37 chr4 187066406 187066460 -15261887 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 23 54 0 0 chr4 187068713 187068750 -15259597 + AT_rich Low_complexity Low_complexity 1 37 0 266 302 137 14 chr4 187069309 187069448 -15258899 - L2 LINE L2 -478 2836 2681 204 304 126 37 chr4 187069631 187069766 -15258581 - L2 LINE L2 -1024 2290 2144 477 246 90 24 chr4 187069993 187070204 -15258143 - L2 LINE L2 -1289 2025 1801 238 306 0 47 chr4 187070350 187070435 -15257912 + L3 LINE CR1 700 780 -797 189 319 43 32 chr4 187071025 187071119 -15257228 + L2 LINE L2 1330 1424 -1890 213 363 10 10 chr4 187071514 187071616 -15256731 - MER5B DNA MER1_type -76 102 1 910 315 51 45 chr4 187071710 187072304 -15256043 + L2 LINE L2 2500 3091 -222 23 0 0 0 chr4 187072315 187072338 -15256009 + AT_rich Low_complexity Low_complexity 1 23 0 1070 119 77 0 chr4 187072722 187072890 -15255457 - AluSg/x SINE Alu -1 311 131 181 297 33 55 chr4 187073988 187074079 -15254268 + MIR SINE MIR 38 126 -82 213 39 0 0 chr4 187074094 187074120 -15254227 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1508 186 0 0 chr4 187074130 187074388 -15253959 - AluJb SINE Alu -54 258 1 24 32 0 0 chr4 187074461 187074492 -15253855 + AT_rich Low_complexity Low_complexity 1 31 0 1871 161 42 0 chr4 187074578 187074908 -15253439 + MER7A DNA MER2_type 5 346 0 795 144 0 0 chr4 187075924 187076056 -15252291 - L1MA10 LINE L1 -8 6326 6195 619 247 102 5 chr4 187076323 187076507 -15251840 + MER20 DNA MER1_type 15 219 0 216 0 0 0 chr4 187076976 187077000 -15251347 + (T)n Simple_repeat Simple_repeat 1 24 0 204 250 0 0 chr4 187078128 187078176 -15250171 + (TA)n Simple_repeat Simple_repeat 1 48 0 247 268 0 53 chr4 187078179 187078301 -15250046 + L1MC4 LINE L1 6611 6703 -1339 216 310 14 0 chr4 187078303 187078374 -15249973 + (TA)n Simple_repeat Simple_repeat 2 73 0 232 253 72 0 chr4 187078374 187078457 -15249890 + L1MC4 LINE L1 6614 6702 -1340 238 274 60 0 chr4 187078496 187078580 -15249767 + L1MC4 LINE L1 6614 6702 -1340 330 281 95 74 chr4 187079287 187079518 -15248829 - L1MEc LINE L1 -4560 1836 1601 30 59 0 0 chr4 187079864 187079915 -15248432 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr4 187080654 187080676 -15247671 + AT_rich Low_complexity Low_complexity 1 22 0 2354 71 0 7 chr4 187080765 187081061 -15247286 - AluY SINE Alu -17 294 1 2266 98 3 0 chr4 187081545 187081841 -15246506 + AluSq SINE Alu 1 297 -16 397 276 31 31 chr4 187082049 187082176 -15246171 + L2 LINE L2 3187 3313 0 273 322 28 21 chr4 187083467 187083610 -15244737 - MIR SINE MIR -30 232 89 813 188 0 0 chr4 187086025 187086158 -15242189 - FLAM_C SINE Alu -10 133 1 242 311 118 17 chr4 187086307 187086426 -15241921 + MIR SINE MIR 132 262 0 237 288 12 12 chr4 187086483 187086563 -15241784 + MIR SINE MIR 66 145 -63 696 280 61 43 chr4 187087117 187087446 -15240901 + LTR16A LTR ERVL 20 354 -96 1063 148 18 14 chr4 187087473 187087690 -15240657 - L1MB3 LINE L1 -17 6166 5949 21 110 0 0 chr4 187087709 187087800 -15240547 + AT_rich Low_complexity Low_complexity 1 91 0 24 0 0 0 chr4 187087811 187087835 -15240512 + AT_rich Low_complexity Low_complexity 1 24 0 1787 118 11 11 chr4 187088296 187088575 -15239772 - L1PA15 LINE L1 -2 6163 5885 286 105 0 6 chr4 187088677 187088735 -15239612 - L1PA10 LINE L1 -2 6172 6115 22 0 0 0 chr4 187088737 187088759 -15239588 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr4 187089865 187089900 -15238447 + AT_rich Low_complexity Low_complexity 1 35 0 29 47 0 0 chr4 187089971 187090014 -15238333 + AT_rich Low_complexity Low_complexity 1 43 0 1155 185 27 142 chr4 187090149 187090199 -15238148 + MLT1A1 LTR MaLR 1 55 -310 2157 134 7 0 chr4 187090199 187090506 -15237841 + AluSx SINE Alu 1 309 -3 1155 185 27 142 chr4 187090506 187090865 -15237482 + MLT1A1 LTR MaLR 55 363 -2 209 261 90 60 chr4 187092785 187092932 -15235415 + MIR SINE MIR 27 178 -61 222 91 0 0 chr4 187093672 187093705 -15234642 + (CA)n Simple_repeat Simple_repeat 2 34 0 720 155 0 0 chr4 187094443 187094572 -15233775 - L1MA3 LINE L1 -8 6297 6169 517 244 72 44 chr4 187094577 187094757 -15233590 + L2 LINE L2 3113 3297 -16 1929 144 49 44 chr4 187095357 187095747 -15232600 + L1MC3 LINE L1 5256 5647 -2138 8137 211 39 15 chr4 187095750 187097707 -15230640 + L1MC3 LINE L1 5781 7783 -2 31 58 0 0 chr4 187099505 187099557 -15228790 + AT_rich Low_complexity Low_complexity 1 52 0 197 95 0 24 chr4 187099568 187099610 -15228737 + (TA)n Simple_repeat Simple_repeat 2 42 0 321 26 0 0 chr4 187099610 187099648 -15228699 + (CA)n Simple_repeat Simple_repeat 2 39 0 255 204 0 0 chr4 187100546 187100600 -15227747 + (TA)n Simple_repeat Simple_repeat 2 55 0 618 222 0 7 chr4 187100973 187101108 -15227239 - L1MA8 LINE L1 -1167 4979 4846 * 4852 159 43 30 chr4 187101102 187101886 -15226461 + L1MA8 LINE L1 4996 5803 -488 1260 190 3 126 chr4 187101886 187102228 -15226119 + AluJb SINE Alu 1 300 -2 4852 159 43 30 chr4 187102228 187102677 -15225670 + L1MA8 LINE L1 5803 6245 -46 303 49 0 0 chr4 187102680 187102721 -15225626 + (TA)n Simple_repeat Simple_repeat 1 41 0 276 102 0 0 chr4 187104005 187104054 -15224293 + (T)n Simple_repeat Simple_repeat 1 49 0 2529 123 57 9 chr4 187104387 187104428 -15223919 - MLT2A1 LTR ERVL 0 444 406 303 28 0 0 chr4 187104428 187104464 -15223883 + (TG)n Simple_repeat Simple_repeat 1 36 0 2529 123 57 9 chr4 187104464 187104843 -15223504 - MLT2A1 LTR ERVL -38 406 4 312 279 34 14 chr4 187105764 187105911 -15222436 + L1 LINE L1 2242 2391 -3755 22 0 0 0 chr4 187106018 187106040 -15222307 + AT_rich Low_complexity Low_complexity 1 22 0 13285 23 0 0 chr4 187106165 187108497 -15219850 + L1PA3 LINE L1 3820 6152 -3 242 289 63 42 chr4 187108513 187108655 -15219692 + L1MC4a LINE L1 6450 6594 -1214 1140 287 148 37 chr4 187108674 187109839 -15218508 + L1MC4 LINE L1 6748 8042 0 256 302 134 28 chr4 187110597 187110635 -15217712 - L1ME3A LINE L1 -14 6156 6123 180 0 0 0 chr4 187110635 187110655 -15217692 + (TG)n Simple_repeat Simple_repeat 1 20 0 256 302 134 28 chr4 187110655 187110795 -15217552 - L1ME3A LINE L1 -47 6123 5959 886 298 32 11 chr4 187110834 187111210 -15217137 - L1ME3A LINE L1 -385 5785 5402 2925 187 31 7 chr4 187111798 187112414 -15215933 - L1MC1 LINE L1 0 6333 5703 1208 268 87 7 chr4 187112414 187112829 -15215518 + L1 LINE L1 2622 3069 -3077 1801 130 181 14 chr4 187112829 187113182 -15215165 - MSTA LTR MaLR 0 428 17 7736 231 15 29 chr4 187113187 187115096 -15213251 + L1 LINE L1 3074 4951 -1195 2312 99 0 0 chr4 187115096 187115398 -15212949 + AluSg SINE Alu 1 302 -8 7736 231 15 29 chr4 187115398 187115665 -15212682 + L1 LINE L1 4951 5220 -926 4807 144 34 5 chr4 187115907 187116860 -15211487 + L1PA16 LINE L1 5083 6061 -105 425 52 0 0 chr4 187116862 187116920 -15211427 + L1PA16 LINE L1 6099 6156 -10 6409 232 38 13 chr4 187116934 187119146 -15209201 - L1MC1 LINE L1 -625 5708 3443 413 292 36 30 chr4 187119143 187119311 -15209036 - L1M4 LINE L1 -933 5213 5045 * 230 313 20 0 chr4 187119586 187119685 -15208662 - L1M4 LINE L1 -1426 4720 4620 212 256 13 0 chr4 187119707 187119785 -15208562 + (TTA)n Simple_repeat Simple_repeat 2 80 0 526 277 135 67 chr4 187119891 187121226 -15207121 - L1M4 LINE L1 -1892 4254 2829 32 0 0 0 chr4 187121370 187121402 -15206945 + AT_rich Low_complexity Low_complexity 1 32 0 1564 181 19 0 chr4 187121402 187121716 -15206631 + L1MA4 LINE L1 5981 6300 0 21 36 0 0 chr4 187121886 187121914 -15206433 + AT_rich Low_complexity Low_complexity 1 28 0 249 108 0 0 chr4 187122564 187122601 -15205746 + (TA)n Simple_repeat Simple_repeat 1 37 0 42311 36 21 2 chr4 187122855 187128889 -15199458 + L1PA3 LINE L1 1 6155 0 1676 292 22 43 chr4 187128936 187129514 -15198833 - MLT1E LTR MaLR -27 566 1 26 50 0 0 chr4 187130900 187130940 -15197407 + AT_rich Low_complexity Low_complexity 1 40 0 282 315 36 9 chr4 187131362 187131530 -15196817 + MIR SINE MIR 8 224 -38 2084 72 0 0 chr4 187131707 187131986 -15196361 + L1PA5 LINE L1 5876 6154 0 1556 308 82 23 chr4 187132000 187133027 -15195320 + L1ME2 LINE L1 3 1089 -4981 2183 228 9 11 chr4 187133036 187133493 -15194854 + MLT1C LTR MaLR 12 467 0 1294 264 109 35 chr4 187133789 187134707 -15193640 + L1ME2 LINE L1 2057 3042 -3038 2292 263 85 9 chr4 187134733 187135548 -15192799 + L1ME2 LINE L1 5228 6266 -2 2394 189 52 4 chr4 187135850 187136369 -15191978 + MER6A DNA MER2_type 36 579 -26 3926 151 34 13 chr4 187136369 187137071 -15191276 + LTR62 LTR ERVK 1 717 -2 25 0 0 0 chr4 187138638 187138663 -15189684 + AT_rich Low_complexity Low_complexity 1 25 0 314 282 47 0 chr4 187138663 187138748 -15189599 - L1MC4 LINE L1 -1339 6703 6615 233 326 0 0 chr4 187138764 187138856 -15189491 + L1MC4 LINE L1 6612 6703 -1339 458 188 0 8 chr4 187138909 187139026 -15189321 + (TA)n Simple_repeat Simple_repeat 2 117 0 2104 112 26 0 chr4 187140066 187140369 -15187978 - AluY SINE Alu 0 311 1 262 235 0 44 chr4 187140641 187140709 -15187638 + MERVL LTR ERVL 2946 3010 -2475 2220 108 3 0 chr4 187143526 187143822 -15184525 - AluSx SINE Alu -15 297 1 3533 157 44 52 chr4 187145406 187146131 -15182216 + LTR62 LTR ERVK 1 719 0 824 153 77 22 chr4 187146131 187146314 -15182033 + MER6 DNA MER2_type 673 865 0 386 243 83 14 chr4 187146317 187146461 -15181886 + MIR SINE MIR 41 194 -68 863 217 136 0 chr4 187146499 187146697 -15181650 - MSTD LTR MaLR -170 226 2 183 333 16 0 chr4 187146708 187146771 -15181576 + MIR SINE MIR 199 262 0 226 376 73 18 chr4 187148402 187148567 -15179780 - MIR SINE MIR -66 196 23 211 346 89 0 chr4 187148633 187148734 -15179613 - MER91C DNA MER1_type 0 140 31 182 176 20 0 chr4 187149017 187149068 -15179279 + (TATG)n Simple_repeat Simple_repeat 1 52 0 207 337 110 25 chr4 187149268 187149431 -15178916 + L3 LINE CR1 1331 1507 -70 2276 70 0 51 chr4 187149432 187149744 -15178603 + AluY SINE Alu 1 296 -15 496 244 0 0 chr4 187149747 187149866 -15178481 - L1P LINE L1 -873 5273 5155 692 190 15 0 chr4 187149866 187150003 -15178344 + L1PA16 LINE L1 6022 6160 -6 1939 134 46 22 chr4 187150899 187151265 -15177082 - THE1C LTR MaLR 0 375 1 27 73 0 0 chr4 187151404 187151459 -15176888 + AT_rich Low_complexity Low_complexity 1 55 0 21 57 0 0 chr4 187153411 187153446 -15174901 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr4 187153787 187153811 -15174536 + AT_rich Low_complexity Low_complexity 1 24 0 2374 227 48 49 chr4 187154443 187155135 -15173212 - LTR8 LTR ERV1 0 691 1 286 378 76 0 chr4 187156061 187156233 -15172114 - MIR SINE MIR -25 237 53 207 224 20 0 chr4 187156262 187156311 -15172036 + (TTATG)n Simple_repeat Simple_repeat 4 53 0 2067 145 14 11 chr4 187156837 187157203 -15171144 - L1MA3 LINE L1 -2 6303 5937 12569 194 33 37 chr4 187157234 187157286 -15171061 - L1 LINE L1 -3337 4228 4177 2058 100 10 45 chr4 187157286 187157596 -15170751 - AluSc SINE Alu -10 299 1 12569 194 33 37 chr4 187157596 187157889 -15170458 - L1 LINE L1 -3388 4177 3884 615 62 0 0 chr4 187157889 187157969 -15170378 + (TA)n Simple_repeat Simple_repeat 2 81 0 12569 194 33 37 chr4 187157969 187158818 -15169529 - L1 LINE L1 -3681 3884 3033 2613 82 3 19 chr4 187158818 187159196 -15169151 - L1PA6 LINE L1 0 6154 5783 12569 194 33 37 chr4 187159196 187161082 -15167265 - L1 LINE L1 -4532 3033 1141 2822 117 23 0 chr4 187161082 187161511 -15166836 + L1PA8A LINE L1 5680 6118 -13 186 43 0 0 chr4 187161513 187161536 -15166811 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 12569 194 33 37 chr4 187161536 187162254 -15166093 - L1 LINE L1 -6425 1140 13 21 0 0 0 chr4 187162324 187162345 -15166002 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 187163931 187163952 -15164395 + AT_rich Low_complexity Low_complexity 1 21 0 2459 222 28 47 chr4 187164634 187165498 -15162849 - MER73 LTR ERVL 0 644 6 30 59 0 0 chr4 187165648 187165699 -15162648 + AT_rich Low_complexity Low_complexity 1 51 0 468 286 61 45 chr4 187166051 187166296 -15162051 - HAL1b LINE L1 -784 564 316 244 213 0 0 chr4 187167388 187167435 -15160912 + (TG)n Simple_repeat Simple_repeat 2 48 0 38 61 0 0 chr4 187168001 187168067 -15160280 + AT_rich Low_complexity Low_complexity 1 66 0 1022 168 26 5 chr4 187168254 187168445 -15159902 - L1PA10 LINE L1 -11 6157 5963 27 49 0 0 chr4 187168580 187168621 -15159726 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr4 187168804 187168832 -15159515 + AT_rich Low_complexity Low_complexity 1 28 0 323 337 18 12 chr4 187168989 187169158 -15159189 - L1M4 LINE L1 -1821 4325 4156 319 266 87 40 chr4 187169234 187169486 -15158861 - L1M4 LINE L1 -2092 4054 3791 202 356 149 11 chr4 187170746 187170920 -15157427 + L3 LINE CR1 1314 1511 -66 678 286 165 37 chr4 187171357 187172041 -15156306 - L2 LINE L2 -2 3311 2563 242 356 129 26 chr4 187172043 187172307 -15156040 - L2 LINE L2 -1974 1340 1050 184 319 72 58 chr4 187172963 187173101 -15155246 + MIR3 SINE MIR 30 169 -39 298 0 0 0 chr4 187173181 187173215 -15155132 + tRNA-Cys-TGC tRNA tRNA 4 37 -38 803 226 96 63 chr4 187173421 187173660 -15154687 - AluJo SINE Alu -65 247 1 24 53 0 0 chr4 187173916 187173954 -15154393 + AT_rich Low_complexity Low_complexity 1 38 0 45 55 0 0 chr4 187174298 187174371 -15153976 + AT_rich Low_complexity Low_complexity 1 73 0 23 0 0 0 chr4 187175460 187175483 -15152864 + AT_rich Low_complexity Low_complexity 1 23 0 3348 134 8 15 chr4 187175872 187176403 -15151944 - MER1A DNA MER1_type 0 527 1 281 354 96 25 chr4 187178176 187178374 -15149973 - MIR SINE MIR -38 224 13 195 345 63 14 chr4 187178675 187178817 -15149530 + MIR SINE MIR 12 160 -102 445 244 23 23 chr4 187179018 187179194 -15149153 + (TA)n Simple_repeat Simple_repeat 2 177 0 343 300 115 8 chr4 187179467 187179597 -15148750 - MER69A DNA AcHobo -16 161 18 37 52 0 0 chr4 187179994 187180052 -15148295 + AT_rich Low_complexity Low_complexity 1 58 0 181 368 88 46 chr4 187180208 187180664 -15147683 - L2 LINE L2 -502 2812 2338 1394 217 51 22 chr4 187182249 187182604 -15145743 - MLT1B LTR MaLR -8 382 18 2184 50 0 7 chr4 187182787 187183068 -15145279 + L1PA4 LINE L1 5874 6152 -3 235 222 111 28 chr4 187183755 187183863 -15144484 + L1ME LINE L1 5531 5647 -474 445 267 300 11 chr4 187184211 187184391 -15143956 - MIR SINE MIR -29 233 2 233 268 0 18 chr4 187184864 187184920 -15143427 + L2 LINE L2 3212 3266 -47 1775 93 0 8 chr4 187185571 187185807 -15142540 + AluSc SINE Alu 1 234 -75 2372 214 31 4 chr4 187189617 187190130 -15138217 + MER82 DNA MER2_type 7 533 -120 630 246 24 35 chr4 187190156 187190354 -15137993 + MLT1A1 LTR MaLR 214 365 0 555 177 21 0 chr4 187190364 187190460 -15137887 + MER82 DNA MER2_type 547 644 -9 223 218 0 36 chr4 187190627 187190682 -15137665 + (CATA)n Simple_repeat Simple_repeat 1 53 0 262 374 65 0 chr4 187191451 187191590 -15136757 + L2 LINE L2 3164 3311 -2 629 256 138 9 chr4 187193345 187193692 -15134655 - L1M4 LINE L1 -3129 3017 2626 306 173 111 0 chr4 187193715 187193796 -15134551 + L1ME1 LINE L1 5979 6068 -98 244 310 185 15 chr4 187193844 187194179 -15134168 + L2 LINE L2 1722 2113 -1201 378 286 86 6 chr4 187194424 187194683 -15133664 + LTR33A LTR ERVL 317 508 -15 335 385 18 6 chr4 187195047 187195216 -15133131 + MIR3 SINE MIR 16 186 -22 22 0 0 0 chr4 187197782 187197804 -15130543 + AT_rich Low_complexity Low_complexity 1 22 0 279 0 0 0 chr4 187197886 187197917 -15130430 + (TG)n Simple_repeat Simple_repeat 1 31 0 180 163 0 0 chr4 187197945 187197988 -15130359 + (TA)n Simple_repeat Simple_repeat 2 44 0 903 178 6 18 chr4 187198316 187198485 -15129862 + LTR28 LTR ERV1 1 167 -853 2354 215 49 18 chr4 187198520 187199158 -15129189 + LTR28 LTR ERV1 119 970 -50 368 225 14 36 chr4 187199167 187199305 -15129042 + LTR27 LTR ERV1 500 634 -2 350 290 181 0 chr4 187199556 187199694 -15128653 - MIR SINE MIR -8 254 92 24 53 0 0 chr4 187199819 187199857 -15128490 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr4 187199979 187200001 -15128346 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr4 187200057 187200093 -15128254 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 187200287 187200308 -15128039 + AT_rich Low_complexity Low_complexity 1 21 0 1429 126 0 40 chr4 187200326 187200549 -15127798 + AluSq SINE Alu 4 217 -96 21 0 0 0 chr4 187201129 187201150 -15127197 + AT_rich Low_complexity Low_complexity 1 21 0 288 315 123 8 chr4 187201171 187201301 -15127046 - MIR SINE MIR -50 212 68 487 272 77 50 chr4 187201760 187202021 -15126326 + L1M4 LINE L1 3071 3338 -2808 1367 244 68 14 chr4 187202056 187202556 -15125791 + L1ME1 LINE L1 696 1222 -5174 264 231 174 8 chr4 187202569 187202690 -15125657 + L1ME1 LINE L1 5201 5341 -874 5564 243 56 29 chr4 187202822 187204737 -15123610 + L1MC1 LINE L1 2721 4686 -1460 3223 170 11 33 chr4 187204742 187205371 -15122976 + L1MC1 LINE L1 5634 6248 -85 532 309 0 6 chr4 187205370 187205538 -15122809 + L1ME1 LINE L1 5530 5696 -539 * 21 71 0 0 chr4 187205565 187205607 -15122740 + AT_rich Low_complexity Low_complexity 1 42 0 1172 252 24 19 chr4 187205640 187206107 -15122240 + L1ME1 LINE L1 5698 6028 -207 1168 269 186 14 chr4 187206155 187206780 -15121567 + L1ME1 LINE L1 5430 6161 -5 2053 51 0 16 chr4 187206845 187207102 -15121245 - AluY SINE Alu -18 293 41 33 20 0 20 chr4 187208392 187208410 -15119937 + AT_rich Low_complexity Low_complexity 1 18 -32 2082 95 11 0 chr4 187208410 187208694 -15119653 + AluSc SINE Alu 1 287 -22 33 20 0 20 chr4 187208694 187208726 -15119621 + AT_rich Low_complexity Low_complexity 18 50 0 501 254 149 10 chr4 187208828 187209029 -15119318 + L1ME3 LINE L1 5810 6038 -124 31 26 0 0 chr4 187209414 187209452 -15118895 + AT_rich Low_complexity Low_complexity 1 38 0 22 88 0 0 chr4 187210154 187210211 -15118136 + AT_rich Low_complexity Low_complexity 1 57 0 1860 160 27 0 chr4 187210213 187210506 -15117841 + AluJb SINE Alu 1 301 -11 22 0 0 0 chr4 187210602 187210624 -15117723 + AT_rich Low_complexity Low_complexity 1 22 0 2259 115 0 3 chr4 187210777 187211090 -15117257 - AluSx SINE Alu 0 312 1 2876 138 25 6 chr4 187211629 187212143 -15116204 - L1MA4 LINE L1 0 6300 5777 293 219 25 17 chr4 187212145 187212261 -15116086 - L1MCa LINE L1 -1339 7201 2213 10218 187 36 9 chr4 187212284 187212495 -15115852 - L1MA4 LINE L1 -515 5788 5584 1678 165 32 35 chr4 187212495 187212871 -15115476 - THE1C LTR MaLR 0 375 1 10218 187 36 9 chr4 187212871 187215359 -15112988 - L1MA4 LINE L1 -719 5584 3020 2038 180 12 10 chr4 187215364 187215776 -15112571 + L1MA4 LINE L1 5887 6299 -1 21 36 0 0 chr4 187215776 187215804 -15112543 + AT_rich Low_complexity Low_complexity 1 28 0 361 292 53 53 chr4 187216096 187216305 -15112042 + L1MC/D LINE L1 5615 5823 -1985 2225 53 4 7 chr4 187216865 187217173 -15111174 + AluY SINE Alu 1 307 0 24 53 0 0 chr4 187218334 187218372 -15109975 + AT_rich Low_complexity Low_complexity 1 38 0 28 29 0 0 chr4 187219134 187219169 -15109178 + AT_rich Low_complexity Low_complexity 1 35 0 306 281 106 12 chr4 187220400 187220560 -15107787 - L1MCa LINE L1 -6298 244 70 22 0 0 0 chr4 187220597 187220619 -15107728 + AT_rich Low_complexity Low_complexity 1 22 0 231 79 26 0 chr4 187221550 187221588 -15106759 + MADE1 DNA Mariner 42 80 0 26 74 0 0 chr4 187221629 187221683 -15106664 + AT_rich Low_complexity Low_complexity 1 54 0 8399 120 50 10 chr4 187222086 187223456 -15104891 - Tigger1 DNA MER2_type -498 1920 497 404 236 34 0 chr4 187223465 187223554 -15104793 - Tigger1 DNA MER2_type -2089 329 238 2090 146 82 76 chr4 187223555 187224055 -15104292 + LTR54 LTR ERV1 3 505 -5 687 141 0 8 chr4 187224058 187224179 -15104168 - Tigger1 DNA MER2_type -2174 244 125 564 131 0 0 chr4 187224169 187224253 -15104094 - U1 snRNA snRNA -79 86 3 * 562 231 31 15 chr4 187224249 187224379 -15103968 - Tigger1 DNA MER2_type -2282 136 5 * 183 80 0 0 chr4 187224381 187224406 -15103941 + (TATATG)n Simple_repeat Simple_repeat 6 30 0 855 283 59 48 chr4 187224418 187224979 -15103368 - Charlie2 DNA MER1_type -421 2441 1875 7489 33 0 8 chr4 187225468 187226409 -15101938 + L1PA3 LINE L1 5219 6152 -3 360 307 50 0 chr4 187226574 187226714 -15101633 - Charlie2 DNA MER1_type -2715 147 1 707 181 0 27 chr4 187226906 187227055 -15101292 + L1P LINE L1 3349 3493 -2653 * 5809 171 19 4 chr4 187227049 187228096 -15100251 + L1MC1 LINE L1 5271 6333 0 374 22 0 0 chr4 187228215 187228260 -15100087 - L1PA4 LINE L1 -238 5917 5873 1651 20 0 5 chr4 187228260 187228453 -15099894 + L1PA4 LINE L1 5954 6147 -8 189 0 0 0 chr4 187230021 187230042 -15098305 + (A)n Simple_repeat Simple_repeat 1 21 0 2491 220 16 65 chr4 187231655 187232331 -15096016 - LTR8 LTR ERV1 -19 672 30 2045 92 7 24 chr4 187232794 187233087 -15095260 + AluSc SINE Alu 1 288 -21 246 382 0 0 chr4 187233788 187233898 -15094449 + (TATATG)n Simple_repeat Simple_repeat 4 113 0 30 0 0 0 chr4 187234287 187234317 -15094030 + AT_rich Low_complexity Low_complexity 1 30 0 1013 287 71 20 chr4 187234636 187235131 -15093216 - L1MC4 LINE L1 -576 7466 6947 1062 281 80 55 chr4 187235201 187235727 -15092620 - MER97c DNA MER1_type? -526 564 26 29 28 0 0 chr4 187236147 187236183 -15092164 + AT_rich Low_complexity Low_complexity 1 36 0 349 338 46 28 chr4 187238486 187238702 -15089645 + L1M3c LINE L1 1369 1588 -4553 681 313 38 28 chr4 187238996 187239392 -15088955 + L1ME LINE L1 34 433 -6006 3352 141 7 19 chr4 187239411 187239985 -15088362 - L1PB3 LINE L1 -12 6142 5576 230 243 52 66 chr4 187240095 187240231 -15088116 + L1ME LINE L1 1425 1558 -5301 1137 233 52 106 chr4 187240389 187240529 -15087818 + L1ME LINE L1 674 820 -5619 1818 144 7 17 chr4 187240529 187240854 -15087493 + AluSx SINE Alu 1 312 0 1137 233 52 106 chr4 187240854 187241409 -15086938 + L1ME LINE L1 820 1331 -5108 648 269 96 68 chr4 187241420 187241996 -15086351 + L1ME LINE L1 1588 2179 -4778 516 297 137 40 chr4 187241981 187243004 -15085343 + L1ME LINE L1 1574 2695 -4443 * 570 238 93 90 chr4 187243184 187244018 -15084329 + L1ME LINE L1 5599 6422 -553 2459 124 3 6 chr4 187244030 187244394 -15083953 - THE1B LTR MaLR -1 363 1 7909 123 138 40 chr4 187244394 187245833 -15082514 - THE1B-int LTR MaLR 0 1580 2 1790 164 94 3 chr4 187245834 187246164 -15082183 - THE1B LTR MaLR 0 364 5 452 241 18 0 chr4 187246164 187246276 -15082071 + L1ME LINE L1 6431 6544 -433 * 987 235 48 144 chr4 187246273 187247212 -15081135 + L1ME LINE L1 3129 3977 -2980 793 279 122 21 chr4 187247266 187247872 -15080475 + L1ME LINE L1 4885 5551 -1406 315 267 68 27 chr4 187248436 187248582 -15079765 + L1ME LINE L1 5557 5708 -1249 817 292 0 0 chr4 187248590 187248792 -15079555 + L1ME LINE L1 6236 6437 -538 2232 219 11 15 chr4 187248944 187249401 -15078946 - MER82 DNA MER2_type -1 652 198 657 261 20 20 chr4 187249936 187250135 -15078212 - MER82 DNA MER2_type -449 204 6 726 230 36 20 chr4 187250208 187250404 -15077943 + Charlie2 DNA MER1_type 1836 2034 -828 1925 107 8 0 chr4 187250438 187250701 -15077646 - AluSx SINE Alu -47 265 1 307 265 8 0 chr4 187250754 187250871 -15077476 + Charlie2 DNA MER1_type 2650 2767 -95 24 0 0 0 chr4 187250908 187250932 -15077415 + AT_rich Low_complexity Low_complexity 1 24 0 1419 231 63 20 chr4 187251421 187251771 -15076576 + MLT1A1 LTR MaLR 1 365 0 223 294 64 28 chr4 187252300 187252409 -15075938 - MIR SINE MIR -85 177 65 280 382 30 0 chr4 187252565 187252696 -15075651 - MIR SINE MIR -68 194 60 1132 180 98 61 chr4 187252761 187253056 -15075291 - MER2 DNA MER2_type -1 344 39 753 117 0 9 chr4 187253679 187253790 -15074557 + AluSg SINE Alu 2 111 -199 5029 28 7 0 chr4 187253790 187254396 -15073951 + L1P LINE L1 4199 4808 -1338 357 244 47 0 chr4 187254722 187254808 -15073539 + L1MC4 LINE L1 6614 6703 -1339 301 239 91 0 chr4 187254732 187254820 -15073527 - L1MC4 LINE L1 -1339 6703 6608 * 1718 186 20 14 chr4 187255011 187255366 -15072981 + MER46B DNA MER2_type 5 236 0 2876 233 56 75 chr4 187256118 187256331 -15072016 + L1MCb LINE L1 4 219 -6345 3807 29 0 0 chr4 187256331 187256780 -15071567 + L1PA4 LINE L1 5693 6141 -14 2876 233 56 75 chr4 187256780 187259272 -15069075 + L1MCb LINE L1 219 2766 -3798 255 234 65 9 chr4 187259275 187259382 -15068965 + L1MC3 LINE L1 7673 7785 0 424 325 135 13 chr4 187259578 187259815 -15068532 - LTR16A1 LTR ERVL -2 455 190 23 33 0 0 chr4 187259954 187259984 -15068363 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr4 187262333 187262354 -15065993 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 225 0 0 0 chr4 187262353 187262378 -15065969 + (CA)n Simple_repeat Simple_repeat 1 25 0 520 366 45 3 chr4 187262521 187262813 -15065534 - LTR16C LTR ERVL 0 491 188 234 146 0 0 chr4 187262827 187262868 -15065479 + MLT1D LTR MaLR 465 505 0 2109 304 83 99 chr4 187263462 187264134 -15064213 - L2 LINE L2 -102 3211 2530 2281 78 0 23 chr4 187264134 187264441 -15063906 - AluY SINE Alu -1 310 11 2109 304 83 99 chr4 187264441 187264477 -15063870 - L2 LINE L2 -783 2530 2495 769 192 0 0 chr4 187264477 187264607 -15063740 + FRAM SINE Alu 25 154 -22 2109 304 83 99 chr4 187264607 187265813 -15062534 - L2 LINE L2 -818 2495 1185 252 0 0 0 chr4 187265813 187265841 -15062506 + (TG)n Simple_repeat Simple_repeat 1 28 0 2109 304 83 99 chr4 187265841 187265985 -15062362 - L2 LINE L2 -2128 1185 1040 779 304 5 5 chr4 187266018 187266238 -15062109 - MIR SINE MIR -25 237 18 23 0 0 0 chr4 187266598 187266621 -15061726 + AT_rich Low_complexity Low_complexity 1 23 0 341 286 34 28 chr4 187266633 187266957 -15061390 - L1ME3A LINE L1 -111 6059 5701 322 307 119 55 chr4 187267273 187267799 -15060548 - L1ME3A LINE L1 -2487 3659 3097 24 32 0 0 chr4 187267838 187267869 -15060478 + AT_rich Low_complexity Low_complexity 1 31 0 1051 304 124 44 chr4 187268143 187269296 -15059051 - L2 LINE L2 -8 3305 2032 301 247 106 0 chr4 187269296 187269381 -15058966 - L2 LINE L2 -1462 1852 1759 609 0 37 0 chr4 187269781 187269862 -15058485 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 1989 248 86 13 chr4 187269872 187270653 -15057694 + L1ME3A LINE L1 4444 5281 -865 37 23 0 0 chr4 187270653 187270697 -15057650 + AT_rich Low_complexity Low_complexity 1 44 0 1815 156 19 15 chr4 187270950 187271360 -15056987 - L1PA16 LINE L1 -10 6156 5710 189 0 0 0 chr4 187271394 187271415 -15056932 + (A)n Simple_repeat Simple_repeat 1 21 0 1242 222 103 18 chr4 187271419 187271748 -15056599 + LTR18A LTR ERVL 1 357 0 35156 147 11 6 chr4 187271755 187277703 -15050644 + HERVL18 LTR ERVL 2 6047 0 658 244 75 25 chr4 187277704 187277905 -15050442 + LTR18A LTR ERVL 1 211 -146 473 141 0 30 chr4 187277909 187278008 -15050339 + LTR18B LTR ERVL 506 601 -13 924 232 18 4 chr4 187278010 187278282 -15050065 + L1 LINE L1 3222 3497 -2649 310 189 98 0 chr4 187278275 187278418 -15049929 + L1ME3A LINE L1 5271 5427 -906 * 21 57 0 0 chr4 187278581 187278616 -15049731 + AT_rich Low_complexity Low_complexity 1 35 0 2448 65 13 3 chr4 187278690 187278998 -15049349 + AluY SINE Alu 1 311 0 22 0 0 0 chr4 187279041 187279063 -15049284 + AT_rich Low_complexity Low_complexity 1 22 0 1893 163 27 0 chr4 187279159 187279453 -15048894 - AluJb SINE Alu -10 302 1 22 88 0 0 chr4 187279455 187279512 -15048835 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr4 187280181 187280203 -15048144 + AT_rich Low_complexity Low_complexity 1 22 0 524 277 60 30 chr4 187280482 187280717 -15047630 + L1ME3A LINE L1 5439 5680 -490 314 211 0 11 chr4 187280722 187280812 -15047535 + GA-rich Low_complexity Low_complexity 1 89 0 830 224 81 93 chr4 187280816 187281056 -15047291 + L1ME3A LINE L1 5694 5926 -244 2554 65 0 0 chr4 187281056 187281365 -15046982 - AluY SINE Alu -2 309 1 830 224 81 93 chr4 187281365 187281607 -15046740 + L1ME3A LINE L1 5926 6170 0 700 341 84 12 chr4 187282049 187282550 -15045797 - L1M4 LINE L1 -816 5330 4794 706 288 90 29 chr4 187282587 187283420 -15044927 - L1M4 LINE L1 -1465 4681 3798 3958 134 43 12 chr4 187283581 187283769 -15044578 + L1PA13 LINE L1 4552 4733 -1430 455 95 68 0 chr4 187283769 187283843 -15044504 - MADE1 DNA Mariner -1 79 1 3958 134 43 12 chr4 187283843 187284744 -15043603 + L1PA13 LINE L1 4733 5605 -558 2484 78 0 0 chr4 187284744 187285052 -15043295 - AluY SINE Alu -3 308 1 3958 134 43 12 chr4 187285052 187285178 -15043169 + L1PA13 LINE L1 5605 5726 -437 486 0 0 0 chr4 187285178 187285232 -15043115 + (CA)n Simple_repeat Simple_repeat 2 55 0 3958 134 43 12 chr4 187285232 187285324 -15043023 + L1PA13 LINE L1 5726 5884 -279 6828 177 59 77 chr4 187285324 187287042 -15041305 - MER52A LTR ERV1 0 1755 68 254 216 0 0 chr4 187287404 187287474 -15040873 - MER52A LTR ERV1 -1225 62 1 1369 126 40 5 chr4 187287493 187287715 -15040632 + L1PA13 LINE L1 5922 6151 -12 25 31 0 0 chr4 187287721 187287753 -15040594 + AT_rich Low_complexity Low_complexity 1 32 0 678 317 34 19 chr4 187287959 187288281 -15040066 - L1M4 LINE L1 -2841 3305 2979 4408 158 11 9 chr4 187288282 187289711 -15038636 - L1PA15 LINE L1 -189 5976 4546 1604 209 30 12 chr4 187289947 187290353 -15037994 - L1PA15 LINE L1 -2361 3785 3373 11583 119 15 10 chr4 187291367 187291763 -15036584 + L1PA8 LINE L1 3468 3860 -2312 6518 122 26 24 chr4 187291763 187292832 -15035515 + MER11C LTR ERVK 1 1071 0 11583 119 15 10 chr4 187292832 187295148 -15033199 + L1PA8 LINE L1 3860 6172 0 24 0 0 0 chr4 187295148 187295172 -15033175 + AT_rich Low_complexity Low_complexity 1 24 0 21 89 0 0 chr4 187295796 187295852 -15032495 + AT_rich Low_complexity Low_complexity 1 56 0 10604 219 18 43 chr4 187296525 187296922 -15031425 - L1PB1 LINE L1 -1 6866 6461 198 0 0 0 chr4 187296922 187296944 -15031403 + (TA)n Simple_repeat Simple_repeat 2 23 0 10604 219 18 43 chr4 187296944 187296994 -15031353 - L1PB1 LINE L1 -406 6461 6411 4149 67 182 0 chr4 187296994 187297576 -15030771 - LTR12 LTR ERV1 0 688 1 10604 219 18 43 chr4 187297576 187300417 -15027930 - L1PB1 LINE L1 -456 6411 3501 2102 125 3 10 chr4 187300417 187300721 -15027626 - AluSp SINE Alu -11 302 1 10604 219 18 43 chr4 187300721 187301096 -15027251 - L1PB1 LINE L1 -3366 3501 3118 2142 130 7 0 chr4 187301096 187301395 -15026952 + AluSx SINE Alu 2 302 -10 10604 219 18 43 chr4 187301395 187301742 -15026605 - L1PB1 LINE L1 -3749 3118 2764 5014 87 28 3 chr4 187301742 187302446 -15025901 + LTR30 LTR ERV1 1 722 0 10604 219 18 43 chr4 187302446 187303426 -15024921 - L1PB1 LINE L1 -4103 2764 1953 13083 97 22 12 chr4 187303537 187305591 -15022756 + HERVH LTR ERV1 921 2995 -4718 837 150 20 0 chr4 187305571 187305718 -15022629 + HERVH LTR ERV1 3141 3290 -4423 * 8049 116 11 7 chr4 187305708 187307422 -15020925 + HERVH LTR ERV1 3492 5149 -2287 1295 139 19 0 chr4 187307423 187307639 -15020708 + HERVH LTR ERV1 5600 5819 -1894 2216 103 48 13 chr4 187307639 187308016 -15020331 + HERVH LTR ERV1 7324 7713 0 2714 73 97 7 chr4 187308016 187308427 -15019920 + LTR7 LTR ERV1 1 448 -2 206 339 87 16 chr4 187310140 187310267 -15018080 - MIR3 SINE MIR -26 182 47 766 187 36 6 chr4 187311007 187311173 -15017174 + AluSg/x SINE Alu 133 303 -9 25 51 0 0 chr4 187311242 187311281 -15017066 + AT_rich Low_complexity Low_complexity 1 39 0 28 29 0 0 chr4 187311348 187311383 -15016964 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr4 187311631 187311654 -15016693 + AT_rich Low_complexity Low_complexity 1 23 0 359 299 21 19 chr4 187311717 187311840 -15016507 - MER5B DNA MER1_type -6 172 60 2246 105 0 34 chr4 187312119 187312443 -15015904 + AluSq SINE Alu 1 313 0 1993 122 19 29 chr4 187312819 187313131 -15015216 + AluSg SINE Alu 2 310 0 848 178 58 36 chr4 187314519 187314774 -15013573 + L1MA6 LINE L1 6006 6291 -6 22 35 0 0 chr4 187315088 187315117 -15013230 + AT_rich Low_complexity Low_complexity 1 29 0 234 233 33 0 chr4 187315504 187315564 -15012783 + GA-rich Low_complexity Low_complexity 3 64 0 351 267 75 64 chr4 187315889 187316076 -15012271 + L1MC/D LINE L1 5255 5443 -2365 367 302 60 27 chr4 187316076 187316225 -15012122 - MIR SINE MIR -18 244 91 1252 264 36 66 chr4 187316303 187316878 -15011469 + L1MDa LINE L1 31 588 -5952 180 111 0 0 chr4 187317144 187317171 -15011176 + (TATG)n Simple_repeat Simple_repeat 1 27 0 24 0 0 0 chr4 187317187 187317211 -15011136 + AT_rich Low_complexity Low_complexity 1 24 0 297 296 62 0 chr4 187318132 187318213 -15010134 + MIR3 SINE MIR 111 196 -12 470 268 72 26 chr4 187318239 187318392 -15009955 - MIR SINE MIR 0 262 103 34 42 0 0 chr4 187318447 187318495 -15009852 + AT_rich Low_complexity Low_complexity 1 48 0 1131 227 15 0 chr4 187318495 187318755 -15009592 - L1MB5 LINE L1 -8 6166 5903 2936 214 74 12 chr4 187318779 187320285 -15008062 + L1MB8 LINE L1 156 1904 -4959 7407 36 2 0 chr4 187320485 187321496 -15006851 + L1PA4 LINE L1 5142 6155 0 1068 172 0 6 chr4 187321496 187321665 -15006682 + AluSg/x SINE Alu 127 294 -18 207 139 0 0 chr4 187323524 187323560 -15004787 + (TG)n Simple_repeat Simple_repeat 1 36 0 23 0 0 0 chr4 187324020 187324043 -15004304 + AT_rich Low_complexity Low_complexity 1 23 0 22 94 0 0 chr4 187324817 187324881 -15003466 + AT_rich Low_complexity Low_complexity 1 64 0 437 325 113 65 chr4 187325706 187326306 -15002041 - L1ME3A LINE L1 -270 5900 5272 23 0 0 0 chr4 187326523 187326546 -15001801 + AT_rich Low_complexity Low_complexity 1 23 0 530 299 88 66 chr4 187326584 187326719 -15001628 - L1ME3A LINE L1 -1303 4843 4712 1889 99 67 3 chr4 187326719 187327003 -15001344 - AluSx SINE Alu -10 302 1 530 299 88 66 chr4 187327003 187327470 -15000877 - L1ME3A LINE L1 -1434 4712 4228 5702 235 73 21 chr4 187327541 187328315 -15000032 + L1MB8 LINE L1 4054 4786 -2108 342 0 0 0 chr4 187328315 187328353 -14999994 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 5702 235 73 21 chr4 187328353 187330273 -14998074 + L1MB8 LINE L1 4786 6894 0 27 0 0 0 chr4 187330862 187330889 -14997458 + AT_rich Low_complexity Low_complexity 1 27 0 1388 165 23 30 chr4 187330891 187331157 -14997190 + AluJo SINE Alu 23 286 -26 39 84 0 0 chr4 187331164 187331259 -14997088 + AT_rich Low_complexity Low_complexity 1 95 0 183 80 0 0 chr4 187332039 187332064 -14996283 + (T)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr4 187332111 187332133 -14996214 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr4 187332578 187332607 -14995740 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 187332868 187332891 -14995456 + AT_rich Low_complexity Low_complexity 1 23 0 274 314 25 29 chr4 187333223 187333492 -14994855 + L1MEc LINE L1 1250 1375 -5009 229 286 163 7 chr4 187333534 187333681 -14994666 + L1MEc LINE L1 1520 1689 -4874 218 386 38 41 chr4 187333742 187334061 -14994286 - L2 LINE L2 -690 2624 2307 2234 116 62 0 chr4 187334474 187334827 -14993520 - THE1C LTR MaLR 0 375 1 234 235 0 0 chr4 187335734 187335785 -14992562 + GA-rich Low_complexity Low_complexity 2 52 0 252 333 0 70 chr4 187336161 187336290 -14992057 + MLT1-int LTR MaLR 1013 1132 -239 1470 321 95 60 chr4 187336461 187337054 -14991293 - L2 LINE L2 -314 2999 2428 321 89 0 0 chr4 187337054 187337099 -14991248 + (TATG)n Simple_repeat Simple_repeat 2 46 0 1470 321 95 60 chr4 187337099 187337632 -14990715 - L2 LINE L2 -885 2428 1835 276 325 41 66 chr4 187337636 187337879 -14990468 - L2 LINE L2 -2220 1094 858 933 197 43 65 chr4 187337880 187338159 -14990188 + L1MC3 LINE L1 7501 7773 -12 1525 167 4 4 chr4 187338165 187338411 -14989936 + AluSx SINE Alu 30 275 -37 336 236 0 0 chr4 187338412 187338501 -14989846 + (TA)n Simple_repeat Simple_repeat 2 90 0 621 187 0 37 chr4 187338521 187338708 -14989639 + (TA)n Simple_repeat Simple_repeat 1 180 0 1358 314 77 12 chr4 187338742 187339414 -14988933 - L2 LINE L2 -2480 834 119 202 327 119 30 chr4 187339640 187339842 -14988505 - L2 LINE L2 -1028 2286 2067 1023 297 183 45 chr4 187339876 187340119 -14988228 + L2 LINE L2 1058 1266 -2047 2594 35 0 3 chr4 187340119 187340431 -14987916 - AluY SINE Alu 0 311 1 1023 297 183 45 chr4 187340431 187341137 -14987210 + L2 LINE L2 1266 3312 -1 1094 347 130 31 chr4 187341951 187342967 -14985380 - L2 LINE L2 -1616 1698 583 266 321 131 0 chr4 187343298 187343382 -14984965 - L2 LINE L2 -44 3228 3134 366 356 109 5 chr4 187343944 187344146 -14984201 - MIR SINE MIR -3 259 37 401 300 42 89 chr4 187344461 187345148 -14983199 + L1MEd LINE L1 603 1257 -4862 27 0 0 0 chr4 187345311 187345338 -14983009 + AT_rich Low_complexity Low_complexity 1 27 0 378 348 109 24 chr4 187345393 187345861 -14982486 + L1MEd LINE L1 2330 2837 -3292 2003 120 55 0 chr4 187345902 187346193 -14982154 + AluSq SINE Alu 6 312 -1 276 230 48 32 chr4 187346206 187346332 -14982015 + L1MEd LINE L1 2891 3018 -3111 457 279 90 85 chr4 187346359 187346746 -14981601 + LTR16B LTR ERVL 1 389 -75 969 303 59 27 chr4 187347288 187347697 -14980650 + LTR16B LTR ERVL 34 455 -9 683 234 19 13 chr4 187348261 187348419 -14979928 + MLT1E LTR MaLR 4 162 -431 4928 169 24 98 chr4 187348419 187349611 -14978736 + L1MC1 LINE L1 205 1308 -5118 356 167 0 0 chr4 187349616 187349682 -14978665 + L1MA8 LINE L1 5544 5609 -682 1534 191 38 27 chr4 187349822 187350193 -14978154 + L1MA8 LINE L1 5917 6291 0 * 1666 294 55 23 chr4 187350188 187351001 -14977346 + L1MC1 LINE L1 3569 4407 -2019 * 2589 223 47 34 chr4 187350997 187351632 -14976715 + L1MC1 LINE L1 4934 5560 -1053 1590 183 7 11 chr4 187351632 187351966 -14976381 + AluJb SINE Alu 1 333 0 2589 223 47 34 chr4 187351966 187352518 -14975829 + L1MC1 LINE L1 5560 6145 -468 2047 193 30 35 chr4 187352518 187352948 -14975399 - MSTC LTR MaLR 0 428 1 2589 223 47 34 chr4 187352948 187352991 -14975356 + L1MC1 LINE L1 6145 6186 -427 1702 202 25 0 chr4 187352989 187353345 -14975002 + L1MC1 LINE L1 5376 5740 -593 * 321 105 145 40 chr4 187353345 187353421 -14974926 + MSTB1 LTR MaLR 1 84 -373 1272 215 70 51 chr4 187353453 187353825 -14974522 + MSTB1 LTR MaLR 54 432 0 2429 195 74 20 chr4 187353826 187354385 -14973962 + L1MC1 LINE L1 5737 7779 -6 211 382 40 13 chr4 187354464 187354616 -14973731 + MIR SINE MIR 5 160 -102 3269 148 2 4 chr4 187355640 187356180 -14972167 + L1PB3 LINE L1 5609 6147 -7 2649 87 92 5 chr4 187356454 187356866 -14971481 + LTR7 LTR ERV1 1 448 -2 4605 129 20 22 chr4 187356868 187357714 -14970633 + HERVH LTR ERV1 1 844 -6869 6663 72 10 1 chr4 187409091 187410011 -14918336 + L1PA7 LINE L1 5220 6147 -7 225 0 0 0 chr4 187410011 187410036 -14918311 + (GA)n Simple_repeat Simple_repeat 2 26 0 2189 103 0 0 chr4 187410075 187410356 -14917991 + AluSc SINE Alu 1 281 -28 271 0 0 0 chr4 187410356 187410386 -14917961 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 593 281 31 31 chr4 187410426 187410622 -14917725 - L2 LINE L2 -265 3048 2853 1556 92 13 13 chr4 187411047 187411285 -14917062 - L1P LINE L1 -1464 4682 4445 428 91 15 0 chr4 187411499 187411565 -14916782 + (TA)n Simple_repeat Simple_repeat 2 68 0 2006 189 97 75 chr4 187411868 187412508 -14915839 + MLT1E1 LTR MaLR 1 654 0 307 238 12 12 chr4 187413172 187413256 -14915091 + MLT2C1 LTR ERVL 1 84 -313 22 35 0 0 chr4 187413660 187413689 -14914658 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr4 187414543 187414572 -14913775 + AT_rich Low_complexity Low_complexity 1 29 0 6687 64 18 0 chr4 187414598 187415686 -14912661 - L1PA7 LINE L1 -4 6150 5058 551 90 14 56 chr4 187415854 187415998 -14912349 + (TA)n Simple_repeat Simple_repeat 1 138 0 222 37 0 0 chr4 187415999 187416026 -14912321 + (GA)n Simple_repeat Simple_repeat 1 27 0 723 203 50 33 chr4 187416055 187416296 -14912051 + L1M4 LINE L1 4222 4466 -1680 26 0 0 0 chr4 187416506 187416532 -14911815 + AT_rich Low_complexity Low_complexity 1 26 0 4108 188 66 50 chr4 187416835 187418435 -14909912 - L1MA9 LINE L1 -1 6311 4670 1686 143 204 8 chr4 187418435 187418793 -14909554 - MSTA LTR MaLR 0 428 1 4108 188 66 50 chr4 187418793 187418823 -14909524 - L1MA9 LINE L1 -1642 4670 4642 641 167 47 40 chr4 187418798 187418948 -14909399 - L1MA9 LINE L1 -1886 4260 4110 * 265 377 0 15 chr4 187419193 187419323 -14909024 - L2 LINE L2 -1013 2301 2174 829 245 69 0 chr4 187419333 187419537 -14908810 - MER20 DNA MER1_type -1 218 1 797 218 40 31 chr4 187420535 187420760 -14907587 - MLT1E LTR MaLR 0 593 367 405 70 0 0 chr4 187420768 187420825 -14907522 + (GA)n Simple_repeat Simple_repeat 2 58 0 1102 201 8 25 chr4 187420827 187421066 -14907281 - L1MCa LINE L1 -6186 240 6 281 278 120 30 chr4 187421457 187421590 -14906757 - MIR SINE MIR 0 262 118 248 291 25 0 chr4 187421664 187421738 -14906609 + MER5A DNA MER1_type 1 77 -108 2207 104 0 7 chr4 187421738 187422036 -14906311 + AluSg SINE Alu 1 296 -14 2393 58 3 0 chr4 187422041 187422336 -14906011 + AluY SINE Alu 7 302 -9 3272 213 57 12 chr4 187422634 187423482 -14904865 - L1 LINE L1 -2025 5081 4196 538 256 94 0 chr4 187423525 187423645 -14904702 - L1 LINE L1 -4255 2852 2712 180 0 0 0 chr4 187423645 187423665 -14904682 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 538 256 94 0 chr4 187423665 187423704 -14904643 - L1 LINE L1 -4395 2712 2678 1127 279 44 6 chr4 187423708 187424023 -14904324 - L1 LINE L1 -6702 328 2 483 247 109 4 chr4 187424057 187424304 -14904043 - MER114 LTR ERV -239 409 137 29 0 0 0 chr4 187424451 187424480 -14903867 + AT_rich Low_complexity Low_complexity 1 29 0 2119 176 18 38 chr4 187424638 187425081 -14903266 + Tigger2a DNA MER2_type 1 434 0 27 29 0 0 chr4 187425133 187425167 -14903180 + AT_rich Low_complexity Low_complexity 1 34 0 225 196 0 0 chr4 187425404 187425450 -14902897 + (TA)n Simple_repeat Simple_repeat 2 47 0 211 347 14 0 chr4 187425632 187425704 -14902643 - L2 LINE L2 -4 3309 3237 20205 151 67 31 chr4 187427459 187430137 -14898210 + L1PA8A LINE L1 23 2604 -3842 1948 125 3 14 chr4 187430137 187430426 -14897921 + AluSg SINE Alu 1 286 -24 20205 151 67 31 chr4 187430426 187433848 -14894499 + L1PA8A LINE L1 2604 6419 -27 615 162 17 0 chr4 187433873 187433990 -14894357 - L1MB3 LINE L1 0 6183 6065 207 114 0 0 chr4 187434418 187434453 -14893894 + (CAAAAA)n Simple_repeat Simple_repeat 1 35 0 2649 97 25 8 chr4 187434971 187435364 -14892983 + L1PA10 LINE L1 5755 6154 -14 21 36 0 0 chr4 187435709 187435737 -14892610 + AT_rich Low_complexity Low_complexity 1 28 0 451 314 62 15 chr4 187435793 187436003 -14892344 - MIR SINE MIR -1 261 40 241 370 107 30 chr4 187437429 187437870 -14890477 + L2 LINE L2 1999 2473 -841 879 332 30 42 chr4 187437897 187438394 -14889953 - LTR16C LTR ERVL 0 491 1 208 324 130 83 chr4 187438412 187438736 -14889611 + L2 LINE L2 2552 2890 -424 617 296 15 15 chr4 187439125 187439324 -14889023 + MIR SINE MIR 63 261 -1 21 0 0 0 chr4 187439913 187439934 -14888413 + AT_rich Low_complexity Low_complexity 1 21 0 358 157 9 130 chr4 187440108 187440216 -14888131 + MLT2C1 LTR ERVL 263 357 -40 23 33 0 0 chr4 187441183 187441213 -14887134 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 187441277 187441300 -14887047 + AT_rich Low_complexity Low_complexity 1 23 0 233 250 0 15 chr4 187442130 187442198 -14886149 + (TA)n Simple_repeat Simple_repeat 1 67 0 1686 180 45 64 chr4 187444033 187444505 -14883842 + MLT1C LTR MaLR 1 463 -4 188 241 111 46 chr4 187444517 187444625 -14883722 - MIR3 SINE MIR -12 196 82 250 43 0 65 chr4 187444742 187444788 -14883559 + (GAAA)n Simple_repeat Simple_repeat 3 45 0 183 250 25 0 chr4 187445864 187445904 -14882443 - MER5A DNA MER1_type -141 48 8 1574 249 109 8 chr4 187446160 187446833 -14881514 - L1ME1 LINE L1 -73 6091 5330 969 145 0 0 chr4 187447024 187447169 -14881178 - AluSp/q SINE Alu -14 299 155 307 130 0 0 chr4 187447169 187447215 -14881132 - Alu SINE Alu -254 47 2 1463 180 0 16 chr4 187447429 187447685 -14880662 - AluJo SINE Alu -58 254 3 27 0 0 0 chr4 187448173 187448200 -14880147 + AT_rich Low_complexity Low_complexity 1 27 0 647 204 0 0 chr4 187449594 187449697 -14878650 + 5S rRNA rRNA 1 103 -18 462 184 44 0 chr4 187449744 187449858 -14878489 + L1MC1 LINE L1 5193 5311 -835 * 5248 111 4 19 chr4 187449848 187450659 -14877688 + L1PA15 LINE L1 5364 6162 -3 2245 87 7 3 chr4 187450666 187450965 -14877382 - AluSx SINE Alu -12 300 1 578 185 0 0 chr4 187451001 187451109 -14877238 + L1MC1 LINE L1 5333 5440 -893 739 168 0 40 chr4 187451111 187451260 -14877087 + FLAM_C SINE Alu 1 143 0 4367 183 38 9 chr4 187451298 187452171 -14876176 + L1MC1 LINE L1 5436 6333 0 415 326 61 31 chr4 187452435 187453040 -14875307 - L1M4 LINE L1 -3007 3139 2517 1566 206 51 9 chr4 187453227 187453279 -14875068 - MLT1A1 LTR MaLR 0 365 317 243 0 0 0 chr4 187453279 187453306 -14875041 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1566 206 51 9 chr4 187453306 187453603 -14874744 - MLT1A1 LTR MaLR -48 317 1 580 215 42 42 chr4 187453767 187453911 -14874436 + MLT1A2 LTR MaLR 4 147 -218 438 139 0 14 chr4 187453917 187453989 -14874358 + AluSp/q SINE Alu 180 250 -63 620 129 40 10 chr4 187454098 187454199 -14874148 + MLT1A2 LTR MaLR 271 374 0 1624 263 91 20 chr4 187454266 187455224 -14873123 + L1MEc LINE L1 1836 2808 -3407 22 35 0 0 chr4 187455241 187455270 -14873077 + AT_rich Low_complexity Low_complexity 1 29 0 1604 244 47 19 chr4 187455282 187455794 -14872553 + L1M3 LINE L1 4640 5165 -981 62 58 0 0 chr4 187455796 187455900 -14872447 + AT_rich Low_complexity Low_complexity 1 104 0 983 247 31 25 chr4 187455903 187456269 -14872078 + L1M3 LINE L1 5173 5540 -640 2685 215 49 41 chr4 187456374 187456834 -14871513 + L1MB3 LINE L1 5417 5887 -296 2162 171 50 21 chr4 187456834 187457256 -14871091 + Tigger2a DNA MER2_type 1 434 0 2685 215 49 41 chr4 187457256 187457503 -14870844 + L1MB3 LINE L1 5887 6130 -53 1384 185 36 11 chr4 187457508 187457784 -14870563 + Tigger1 DNA MER2_type 4 286 -2132 910 189 53 10 chr4 187457782 187457988 -14870359 + Tigger1 DNA MER2_type 2188 2402 -16 * 5268 178 159 30 chr4 187458040 187459403 -14868944 + MER52A LTR ERV1 217 1755 0 1771 158 36 0 chr4 187459445 187459723 -14868624 + AluSx SINE Alu 3 290 -22 27 0 0 0 chr4 187460780 187460807 -14867540 + AT_rich Low_complexity Low_complexity 1 27 0 1131 160 5 56 chr4 187461440 187461653 -14866694 - AluJb SINE Alu -30 282 81 896 322 84 26 chr4 187463003 187463625 -14864722 + L2 LINE L2 2638 3295 -18 1893 153 7 7 chr4 187463707 187464002 -14864345 + AluSx SINE Alu 1 295 -17 35 41 0 0 chr4 187464066 187464115 -14864232 + AT_rich Low_complexity Low_complexity 1 49 0 24 32 0 0 chr4 187465149 187465180 -14863167 + AT_rich Low_complexity Low_complexity 1 31 0 1921 153 134 8 chr4 187465181 187465561 -14862786 + MSTA LTR MaLR 1 428 0 317 309 44 8 chr4 187466321 187466533 -14861814 + L1M4 LINE L1 3618 3836 -2310 3408 215 48 21 chr4 187466644 187467411 -14860936 - MLT1A1-int LTR MaLR -946 789 2 1631 219 31 8 chr4 187467413 187467770 -14860577 - MLT1A1 LTR MaLR 0 365 1 232 338 14 0 chr4 187467770 187467844 -14860503 + L1MC4 LINE L1 6905 6979 -1063 2458 240 61 48 chr4 187467858 187468413 -14859934 + L1MC4 LINE L1 7051 7626 -416 1695 188 95 33 chr4 187468413 187468843 -14859504 - MSTB2 LTR MaLR 0 457 1 2458 240 61 48 chr4 187468843 187469249 -14859098 + L1MC4 LINE L1 7626 8025 -17 22 0 0 0 chr4 187469556 187469578 -14858769 + AT_rich Low_complexity Low_complexity 1 22 0 512 249 66 20 chr4 187469670 187469867 -14858480 - MER34 LTR ERV1 0 542 337 1306 239 46 17 chr4 187469872 187470219 -14858128 + L1MB2 LINE L1 17 373 -7192 9281 172 30 14 chr4 187470219 187472657 -14855690 + L1MB2 LINE L1 4845 7366 -224 1115 220 69 82 chr4 187472779 187473093 -14855254 - L1MC5 LINE L1 -121 7840 7523 380 242 55 16 chr4 187473093 187473221 -14855126 - MER94 DNA DNA 0 134 2 1115 220 69 82 chr4 187473221 187473587 -14854760 - L1MC5 LINE L1 -438 7523 7169 447 81 35 0 chr4 187473596 187473682 -14854665 + (TA)n Simple_repeat Simple_repeat 1 89 0 2948 82 0 5 chr4 187473682 187474073 -14854274 - MLT2A1 LTR ERVL -55 389 1 678 238 96 28 chr4 187474075 187474357 -14853990 - L1MC5 LINE L1 -797 7164 6864 13153 158 18 29 chr4 187474434 187476878 -14851469 - Tigger1 DNA MER2_type 0 2418 1 35 63 0 0 chr4 187478272 187478335 -14850012 + AT_rich Low_complexity Low_complexity 1 63 0 24 32 0 0 chr4 187478963 187478994 -14849353 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4 187480770 187480792 -14847555 + AT_rich Low_complexity Low_complexity 1 22 0 863 281 86 31 chr4 187481465 187482145 -14846202 - L1MEc LINE L1 -2202 4013 3265 1309 138 0 65 chr4 187482146 187482421 -14845926 + L1MA10 LINE L1 6075 6331 -3 1197 275 55 25 chr4 187482421 187483117 -14845230 - L1MEc LINE L1 -3501 2714 2039 * 3947 134 43 4 chr4 187483116 187483882 -14844465 + L1PA16 LINE L1 5239 6165 -1 468 289 90 10 chr4 187483885 187484186 -14844161 - L1MEc LINE L1 -4345 2051 1727 333 313 46 38 chr4 187484231 187484497 -14843850 - L1MEc LINE L1 -966 1610 1246 23 33 0 0 chr4 187484527 187484557 -14843790 + AT_rich Low_complexity Low_complexity 1 30 0 268 327 62 5 chr4 187484633 187484841 -14843506 - L1MEc LINE L1 -4983 1222 1003 186 333 0 0 chr4 187484858 187484951 -14843396 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 250 308 0 22 chr4 187484960 187485051 -14843296 + L1MC4 LINE L1 6615 6703 -1339 619 279 54 74 chr4 187485119 187485657 -14842690 - L1MEc LINE L1 -5543 853 327 1827 185 120 34 chr4 187485668 187485989 -14842358 + MER34 LTR ERV1 27 404 -138 1558 202 10 13 chr4 187485989 187486296 -14842051 - AluJo SINE Alu -6 306 1 1827 185 120 34 chr4 187486296 187486449 -14841898 + MER34 LTR ERV1 404 542 0 272 321 50 37 chr4 187486449 187486667 -14841680 - L1MEc LINE L1 -6068 328 108 209 57 29 0 chr4 187488131 187488166 -14840181 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2063 114 0 0 chr4 187488168 187488448 -14839899 - AluSg SINE Alu -30 280 1 367 371 49 10 chr4 187488762 187488967 -14839380 - MLT1K LTR MaLR -158 430 218 2052 130 54 25 chr4 187488967 187489321 -14839026 - THE1B LTR MaLR 0 364 1 10822 122 7 0 chr4 187489321 187490890 -14837457 - THE1B-int LTR MaLR 0 1580 1 2193 125 48 26 chr4 187490890 187491241 -14837106 - THE1B LTR MaLR 0 364 6 224 224 0 17 chr4 187491906 187491964 -14836383 + GA-rich Low_complexity Low_complexity 2 58 0 2052 172 42 16 chr4 187492035 187492413 -14835934 + MER61D LTR ERV1 114 501 0 614 149 18 35 chr4 187492430 187492544 -14835803 + MER61D-int LTR ERV1 19 130 -5087 923 216 12 85 chr4 187492676 187492931 -14835416 + MER61D-int LTR ERV1 182 411 -4806 192 40 0 0 chr4 187492931 187492956 -14835391 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 923 216 12 85 chr4 187492956 187493019 -14835328 + MER61D-int LTR ERV1 411 477 -4740 * 12944 140 56 37 chr4 187492998 187496288 -14832059 + MER61D-int LTR ERV1 407 4037 -1180 2551 142 20 20 chr4 187496316 187497122 -14831225 + MER61D-int LTR ERV1 4370 5217 0 1553 227 33 43 chr4 187497163 187497555 -14830792 + MER61D LTR ERV1 114 501 0 369 0 0 0 chr4 187497731 187497772 -14830575 + (TA)n Simple_repeat Simple_repeat 1 41 0 189 269 60 15 chr4 187498402 187498469 -14829878 + L2 LINE L2 3244 3313 0 905 184 41 0 chr4 187499426 187499644 -14828703 + L1MA7 LINE L1 6064 6290 -1 775 195 46 7 chr4 187500213 187500660 -14827687 + MER34 LTR ERV1 12 541 -1 1649 204 96 21 chr4 187501713 187502139 -14826208 - LOR1b LTR ERV1 -3 458 1 261 289 39 61 chr4 187502222 187502402 -14825945 - L2 LINE L2 -588 2726 2551 26 0 0 0 chr4 187503388 187503414 -14824933 + AT_rich Low_complexity Low_complexity 1 26 0 357 282 118 63 chr4 187503521 187503776 -14824571 - L1ME4a LINE L1 -18 6103 5835 22 35 0 0 chr4 187503782 187503811 -14824536 + AT_rich Low_complexity Low_complexity 1 29 0 199 307 72 60 chr4 187504207 187504373 -14823974 + L2 LINE L2 3114 3281 -32 1642 149 0 30 chr4 187504459 187504727 -14823620 - AluSx SINE Alu -19 293 34 21 0 0 0 chr4 187504957 187504978 -14823369 + AT_rich Low_complexity Low_complexity 1 21 0 768 196 32 0 chr4 187506458 187506616 -14821731 + L1MA6 LINE L1 6094 6256 -44 1427 205 17 14 chr4 187506622 187506968 -14821379 + L1PB4 LINE L1 5807 6153 -3 313 113 0 32 chr4 187507012 187507074 -14821273 + L1MA5 LINE L1 6241 6300 0 2354 204 50 8 chr4 187507084 187507579 -14820768 + MER34 LTR ERV1 27 542 0 4220 85 20 1 chr4 187510435 187511480 -14816867 + L1P3 LINE L1 4737 5796 -376 1857 117 11 0 chr4 187511580 187511846 -14816501 + THE1B LTR MaLR 96 364 0 258 229 48 36 chr4 187512455 187512538 -14815809 - MLT1H-int LTR MaLR -1283 88 5 986 293 95 41 chr4 187512542 187513027 -14815320 - MLT1H LTR MaLR 0 549 39 23 0 0 0 chr4 187513799 187513822 -14814525 + AT_rich Low_complexity Low_complexity 1 23 0 1649 150 88 21 chr4 187513836 187514175 -14814172 + THE1C LTR MaLR 14 375 0 207 274 0 32 chr4 187514427 187514489 -14813858 - MIR SINE MIR -129 79 20 1997 116 32 0 chr4 187514747 187515031 -14813316 - AluSx SINE Alu -19 293 1 225 94 0 0 chr4 187515241 187515273 -14813074 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 942 262 74 0 chr4 187516521 187516616 -14811731 + AluJo SINE Alu 21 108 -204 240 35 0 0 chr4 187516616 187516645 -14811702 + (CA)n Simple_repeat Simple_repeat 2 30 0 942 262 74 0 chr4 187516645 187516793 -14811554 + AluJo SINE Alu 108 282 -30 210 71 0 0 chr4 187516802 187516830 -14811517 + (GA)n Simple_repeat Simple_repeat 2 29 0 3422 144 25 107 chr4 187517550 187518325 -14810022 - MER50 LTR ERV1 -23 711 1 1092 222 70 17 chr4 187518326 187518750 -14809597 - MLT1D LTR MaLR -19 486 1 21 71 0 0 chr4 187518830 187518872 -14809475 + AT_rich Low_complexity Low_complexity 1 42 0 1614 112 21 115 chr4 187519040 187519371 -14808976 + AluYb8 SINE Alu 1 300 -18 202 231 15 0 chr4 187520116 187520181 -14808166 + T-rich Low_complexity Low_complexity 2 67 0 22 88 0 0 chr4 187520544 187520601 -14807746 + AT_rich Low_complexity Low_complexity 1 57 0 2034 147 3 0 chr4 187520638 187520950 -14807397 + AluSq SINE Alu 1 313 0 23 0 0 0 chr4 187521100 187521123 -14807224 + AT_rich Low_complexity Low_complexity 1 23 0 3416 268 58 46 chr4 187521304 187522495 -14805852 + L1ME LINE L1 1226 2439 -4101 2310 84 3 0 chr4 187522495 187522794 -14805553 + AluY SINE Alu 1 300 -11 3416 268 58 46 chr4 187522794 187523152 -14805195 + L1ME LINE L1 2439 2791 -3749 1229 135 5 0 chr4 187523152 187523337 -14805010 + MLT2B1 LTR ERVL 1 186 -334 781 132 54 0 chr4 187523337 187523466 -14804881 - MSTB2 LTR MaLR 0 457 322 970 173 6 11 chr4 187523475 187523654 -14804693 - FRAM SINE Alu 0 176 1 972 211 62 71 chr4 187523654 187523976 -14804371 - MSTB2 LTR MaLR -124 333 15 292 100 80 0 chr4 187524015 187524065 -14804282 + MLT2B1 LTR ERVL 467 520 0 4421 264 61 44 chr4 187524065 187526205 -14802142 + L1ME LINE L1 2787 4961 -1579 421 295 74 11 chr4 187526249 187526439 -14801908 + L1ME LINE L1 5463 5664 -876 2109 253 50 7 chr4 187526793 187527378 -14800969 - MLT1E2 LTR MaLR 0 626 17 387 283 51 29 chr4 187527449 187527587 -14800760 + MIR SINE MIR 48 188 -74 257 311 42 72 chr4 187527850 187528210 -14800137 + L1ME LINE L1 5773 6121 -394 302 285 144 56 chr4 187528347 187528631 -14799716 + MLT1J2 LTR MaLR 100 408 -42 257 272 89 65 chr4 187528671 187528840 -14799507 - MIR SINE MIR -61 201 29 427 113 0 0 chr4 187528843 187528905 -14799442 - AluS SINE Alu -19 293 232 609 301 81 14 chr4 187529171 187529467 -14798880 + L1MEd LINE L1 36 351 -5768 23 0 0 0 chr4 187532079 187532102 -14796245 + AT_rich Low_complexity Low_complexity 1 23 0 254 196 28 93 chr4 187533178 187533285 -14795062 + L1ME LINE L1 6161 6260 -255 652 274 61 4 chr4 187533327 187533557 -14794790 + L1ME1 LINE L1 5742 5984 -182 350 244 118 0 chr4 187534063 187534190 -14794157 - Charlie1 DNA MER1_type 0 2761 2620 * 707 245 102 0 chr4 187534185 187534381 -14793966 - Charlie1 DNA MER1_type -2535 226 11 22 94 0 0 chr4 187534407 187534471 -14793876 + AT_rich Low_complexity Low_complexity 1 64 0 260 226 10 98 chr4 187536310 187536412 -14791935 + LTR65 LTR ERV1 339 431 -238 182 292 15 15 chr4 187536566 187536631 -14791716 - MIR SINE MIR -9 253 189 29 0 0 0 chr4 187536813 187536842 -14791505 + AT_rich Low_complexity Low_complexity 1 29 0 232 264 0 0 chr4 187536868 187536921 -14791426 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 505 42 28 0 chr4 187536935 187537007 -14791340 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 1617 152 53 28 chr4 187537547 187537830 -14790517 - MER1B DNA MER1_type -1 338 49 22 70 0 0 chr4 187538069 187538112 -14790235 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 187538366 187538388 -14789959 + AT_rich Low_complexity Low_complexity 1 22 0 264 319 42 8 chr4 187538421 187538540 -14789807 - MER94 DNA DNA -11 123 1 417 287 70 6 chr4 187538639 187538796 -14789551 - MIR SINE MIR -28 234 68 1234 75 1 0 chr4 187539315 187539470 -14788877 - L1P5 LINE L1 -416 5738 5580 787 66 9 0 chr4 187539470 187539566 -14788781 + L1PA8 LINE L1 6062 6168 -4 1234 75 1 0 chr4 187539566 187539585 -14788762 - L1P5 LINE L1 -574 5580 5563 34 65 0 0 chr4 187540463 187540525 -14787822 + AT_rich Low_complexity Low_complexity 1 62 0 218 296 0 141 chr4 187541129 187541264 -14787083 - L2 LINE L2 -20 3252 3137 246 81 0 0 chr4 187541447 187541484 -14786863 + (GA)n Simple_repeat Simple_repeat 2 38 0 692 335 55 45 chr4 187541547 187541948 -14786399 - L2 LINE L2 -545 2769 2358 1605 202 2 76 chr4 187541948 187542369 -14785978 + MLT1B LTR MaLR 1 390 0 692 335 55 45 chr4 187542369 187542587 -14785760 - L2 LINE L2 -956 2358 2144 31 0 0 0 chr4 187542684 187542715 -14785632 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr4 187542944 187542974 -14785373 + AT_rich Low_complexity Low_complexity 1 30 0 2242 215 23 23 chr4 187543327 187543801 -14784546 - MER70B LTR ERVL -102 476 3 208 345 215 5 chr4 187543820 187544029 -14784318 - MIR SINE MIR -1 261 9 243 309 40 16 chr4 187546660 187546786 -14781561 + L1MEd LINE L1 692 820 -5299 26 64 0 0 chr4 187546786 187546833 -14781514 + AT_rich Low_complexity Low_complexity 1 47 0 2451 244 48 50 chr4 187546893 187547782 -14780565 - L1MD2 LINE L1 -100 6259 5372 38 51 0 0 chr4 187547850 187547909 -14780438 + AT_rich Low_complexity Low_complexity 1 59 0 367 298 0 0 chr4 187547940 187548064 -14780283 - L1MD2 LINE L1 -798 5348 5225 1814 269 54 36 chr4 187548114 187549058 -14779289 + Charlie2 DNA MER1_type 1784 2744 -118 239 219 81 8 chr4 187549247 187549370 -14778977 + (TTAA)n Simple_repeat Simple_repeat 4 135 0 27 0 0 0 chr4 187549622 187549649 -14778698 + AT_rich Low_complexity Low_complexity 1 27 0 31 58 0 0 chr4 187550052 187550104 -14778243 + AT_rich Low_complexity Low_complexity 1 52 0 24 0 0 0 chr4 187550160 187550184 -14778163 + AT_rich Low_complexity Low_complexity 1 24 0 5455 183 5 4 chr4 187550429 187551994 -14776353 + L1PA16 LINE L1 4591 6157 -9 24 0 0 0 chr4 187552934 187552958 -14775389 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 187553658 187553679 -14774668 + AT_rich Low_complexity Low_complexity 1 21 0 184 299 69 35 chr4 187554274 187554361 -14773986 - MIR SINE MIR -12 250 161 1661 204 34 3 chr4 187554799 187555152 -14773195 + MER76 LTR ERV 1 364 -324 280 327 56 56 chr4 187555766 187556139 -14772208 + L1ME4a LINE L1 5562 5934 -187 1856 152 23 13 chr4 187556454 187556763 -14771584 - AluSx SINE Alu 0 312 1 22 35 0 0 chr4 187557026 187557055 -14771292 + AT_rich Low_complexity Low_complexity 1 29 0 194 329 41 0 chr4 187557217 187557290 -14771057 + MIR3 SINE MIR 93 168 -40 480 250 81 71 chr4 187557308 187557910 -14770437 + L1MC5 LINE L1 6764 7442 -519 1246 199 92 14 chr4 187557952 187558233 -14770114 + AluJo SINE Alu 2 304 -8 2230 122 0 0 chr4 187558860 187559172 -14769175 - AluSq SINE Alu -1 312 1 188 333 65 0 chr4 187561092 187561185 -14767162 - MIR SINE MIR -83 179 81 199 345 71 18 chr4 187561722 187561835 -14766512 - L2 LINE L2 -2 3311 3193 25 0 0 0 chr4 187563147 187563172 -14765175 + AT_rich Low_complexity Low_complexity 1 25 0 1579 68 0 0 chr4 187563623 187563813 -14764534 - AluY SINE Alu -87 224 35 22 56 0 0 chr4 187565141 187565177 -14763170 + AT_rich Low_complexity Low_complexity 1 36 0 896 210 110 0 chr4 187566006 187566206 -14762141 + MLT1A1 LTR MaLR 1 222 -143 239 137 20 39 chr4 187566817 187566868 -14761479 + GA-rich Low_complexity Low_complexity 4 53 0 24 53 0 0 chr4 187567153 187567191 -14761156 + AT_rich Low_complexity Low_complexity 1 38 0 37 23 0 0 chr4 187567230 187567274 -14761073 + AT_rich Low_complexity Low_complexity 1 44 0 453 265 39 0 chr4 187567291 187567393 -14760954 - FAM SINE Alu -76 109 4 244 216 0 0 chr4 187567396 187567433 -14760914 - AluJ/monomer SINE Alu -261 41 5 1732 184 20 3 chr4 187567446 187567750 -14760597 - AluJo SINE Alu -1 311 3 1741 221 36 8 chr4 187567761 187568145 -14760202 - L1MB1 LINE L1 0 6168 5774 302 284 108 96 chr4 187568706 187569040 -14759307 - MLT1I LTR MaLR -26 383 46 249 119 0 0 chr4 187569310 187569352 -14758995 + (CA)n Simple_repeat Simple_repeat 2 43 0 2060 106 7 7 chr4 187571549 187571831 -14756516 - AluSx SINE Alu -17 295 14 1492 193 0 29 chr4 187623302 187623613 -14704734 - AluJo SINE Alu -10 302 1 286 340 26 72 chr4 187624680 187624874 -14703473 + MIR SINE MIR 66 250 -12 221 264 170 47 chr4 187626123 187626229 -14702118 + MIR SINE MIR 74 192 -70 210 232 18 0 chr4 187626422 187626478 -14701869 - L2 LINE L2 -61 3252 3196 348 274 83 83 chr4 187627392 187627764 -14700583 - L1MCc LINE L1 -6034 389 18 2369 107 0 0 chr4 187628495 187628805 -14699542 - AluSg SINE Alu 0 310 1 23 33 0 0 chr4 187629331 187629361 -14698986 + AT_rich Low_complexity Low_complexity 1 30 0 479 203 58 14 chr4 187630134 187630152 -14698195 - L1MA10 LINE L1 -1 6333 6316 502 295 75 4 chr4 187630152 187630433 -14697914 - L1ME2 LINE L1 -9 6155 5855 1706 237 59 23 chr4 187630457 187631150 -14697197 + L1ME1 LINE L1 5126 5848 -318 1425 90 5 0 chr4 187632565 187632782 -14695565 + AluSg/x SINE Alu 94 311 0 277 167 0 56 chr4 187633084 187633138 -14695209 - MER66A LTR ERV1 -141 337 287 1642 141 0 15 chr4 187634648 187634917 -14693430 + L1PA16 LINE L1 5899 6163 -3 20044 46 8 2 chr4 187635538 187638086 -14690261 - L1P LINE L1 -878 5268 2706 247 258 48 0 chr4 187639379 187639441 -14688906 + MIR SINE MIR 119 183 -79 2378 59 0 0 chr4 187639624 187639913 -14688434 - AluY SINE Alu -22 289 1 858 190 165 24 chr4 187639942 187640331 -14688016 - LTR49 LTR ERV1 0 595 160 2095 123 3 3 chr4 187641176 187641476 -14686871 + AluSx SINE Alu 1 300 -12 1585 83 0 107 chr4 187642051 187642303 -14686044 - AluY SINE Alu -86 225 1 313 181 139 28 chr4 187642304 187642376 -14685971 - MER101B LTR ERV1 -490 80 1 223 68 0 45 chr4 187642402 187642446 -14685901 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 554 237 0 0 chr4 187642588 187642719 -14685628 + FRAM SINE Alu 45 175 -1 301 281 8 50 chr4 187643413 187643534 -14684813 - MLT1J1 LTR MaLR -2 444 329 698 120 0 0 chr4 187643534 187643634 -14684713 - LTR12 LTR ERV1 -135 579 480 275 220 33 33 chr4 187643634 187643725 -14684622 - LTR30 LTR ERV1 -79 643 553 1551 127 90 22 chr4 187643726 187643993 -14684354 - LTR12 LTR ERV1 -429 285 1 339 260 70 144 chr4 187644047 187644374 -14683973 - MLT1J1 LTR MaLR -143 303 1 180 0 0 0 chr4 187645624 187645644 -14682703 + (TTA)n Simple_repeat Simple_repeat 3 22 0 3834 39 0 0 chr4 187645644 187646101 -14682246 - L1PA4 LINE L1 -18 6137 5681 230 118 0 0 chr4 187646164 187646198 -14682149 - MLT1J1 LTR MaLR -1 445 412 241 240 30 10 chr4 187646985 187647085 -14681262 + (TA)n Simple_repeat Simple_repeat 2 103 0 538 247 43 62 chr4 187648568 187648872 -14679475 + L1MC5 LINE L1 7631 7928 -33 714 254 39 39 chr4 187649304 187649418 -14678929 + MER5A DNA MER1_type 6 122 -67 2046 232 57 36 chr4 187649418 187650029 -14678318 - MLT1E3 LTR MaLR 0 624 1 714 254 39 39 chr4 187650029 187650095 -14678252 + MER5A DNA MER1_type 121 186 -3 366 258 11 0 chr4 187650125 187650214 -14678133 - MER81 DNA DNA -5 109 20 313 355 40 0 chr4 187650715 187650867 -14677480 - MLT1I LTR MaLR -202 207 50 195 129 0 0 chr4 187650918 187650949 -14677398 + (GA)n Simple_repeat Simple_repeat 1 31 0 526 151 19 0 chr4 187652129 187652235 -14676112 + (TCTA)n Simple_repeat Simple_repeat 3 110 0 25 0 0 0 chr4 187654270 187654295 -14674052 + AT_rich Low_complexity Low_complexity 1 25 0 48 72 0 0 chr4 187654361 187654458 -14673889 + AT_rich Low_complexity Low_complexity 1 97 0 261 149 0 0 chr4 187654588 187654635 -14673712 - MLT2C1 LTR ERVL 0 397 351 913 208 43 92 chr4 187654751 187655175 -14673172 - MLT2D LTR ERVL -47 417 1 2094 99 4 0 chr4 187655214 187655487 -14672860 + AluSx SINE Alu 26 299 -13 2176 121 6 16 chr4 187656924 187657239 -14671108 - AluSx SINE Alu 0 312 1 186 71 0 0 chr4 187659540 187659568 -14668779 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 478 252 180 14 chr4 187660069 187660208 -14668139 - MER5A DNA MER1_type -2 187 26 976 229 138 68 chr4 187660418 187660599 -14667748 - MER20B DNA MER1_type -7 776 609 2036 110 3 28 chr4 187660599 187660890 -14667457 + AluSg SINE Alu 1 284 -26 976 229 138 68 chr4 187660890 187661237 -14667110 - MER20B DNA MER1_type -174 609 211 318 312 87 7 chr4 187661393 187661531 -14666816 - MER20B DNA MER1_type -583 200 52 1809 142 44 0 chr4 187661790 187662088 -14666259 + AluSx SINE Alu 1 310 0 46 78 0 0 chr4 187662088 187662190 -14666157 + AT_rich Low_complexity Low_complexity 1 102 0 1002 245 0 17 chr4 187662317 187662550 -14665797 + AluJo SINE Alu 1 229 -83 207 0 0 0 chr4 187662560 187662583 -14665764 + (A)n Simple_repeat Simple_repeat 1 23 0 232 274 55 55 chr4 187662718 187662864 -14665483 - Charlie8 DNA MER1_type -2182 235 90 363 280 0 0 chr4 187663165 187663261 -14665086 + AluJ/FLAM SINE Alu 1 73 -229 224 265 0 0 chr4 187663341 187663390 -14664957 - L2 LINE L2 -9 3304 3256 2069 216 93 3 chr4 187663438 187663566 -14664781 + L1MA9 LINE L1 5654 5769 -543 1027 242 48 0 chr4 187663566 187663793 -14664554 - MER8 DNA MER2_type -1 238 1 2069 216 93 3 chr4 187663793 187664238 -14664109 + L1MA9 LINE L1 5769 6281 -31 229 384 0 0 chr4 187664627 187664713 -14663634 + L2 LINE L2 3186 3271 -1 248 188 72 0 chr4 187665214 187665283 -14663064 - L1MA9 LINE L1 -66 6246 6173 377 274 96 34 chr4 187665368 187665514 -14662833 - MIR3 SINE MIR -34 174 20 261 0 0 0 chr4 187666650 187666679 -14661668 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 324 378 0 9 chr4 187666713 187666824 -14661523 - MIR SINE MIR -130 132 23 418 269 87 5 chr4 187667567 187667775 -14660572 + L1M4 LINE L1 4390 4614 -1532 414 272 31 19 chr4 187668050 187668212 -14660135 + L1M4 LINE L1 4762 4925 -1221 243 278 0 0 chr4 187668261 187668315 -14660032 + MLT1G1 LTR MaLR 3 56 -539 486 248 132 52 chr4 187668441 187668691 -14659656 - L1MC4 LINE L1 -885 7157 6888 2707 212 72 69 chr4 187668720 187669621 -14658726 - L1MC4 LINE L1 -377 7665 6762 1914 138 0 0 chr4 187670504 187670826 -14657521 - AluSx SINE Alu 0 322 1 25 0 0 0 chr4 187670910 187670935 -14657412 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr4 187670956 187670988 -14657359 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr4 187671620 187671648 -14656699 + AT_rich Low_complexity Low_complexity 1 28 0 2184 107 0 19 chr4 187671898 187672217 -14656130 - AluSq SINE Alu 0 313 1 875 161 85 92 chr4 187673860 187674177 -14654170 - L1ME1 LINE L1 -204 5962 5648 383 285 53 26 chr4 187674165 187674316 -14654031 - L1MEc LINE L1 -6198 198 44 * 276 289 33 46 chr4 187674352 187674504 -14653843 + L2 LINE L2 3159 3308 -5 249 254 47 30 chr4 187674799 187674906 -14653441 - MLT1L LTR MaLR -267 142 75 23 33 0 0 chr4 187675934 187675964 -14652383 + AT_rich Low_complexity Low_complexity 1 30 0 2106 108 7 14 chr4 187676189 187676486 -14651861 + AluSc SINE Alu 4 298 -11 21 36 0 0 chr4 187677547 187677575 -14650772 + AT_rich Low_complexity Low_complexity 1 28 0 258 278 41 10 chr4 187678418 187678515 -14649832 - MER21B LTR ERV1 -149 714 615 474 290 40 11 chr4 187678621 187678797 -14649550 + L1ME LINE L1 5476 5656 -506 1587 301 90 43 chr4 187678798 187679609 -14648738 + L1M1 LINE L1 13 1008 -6481 1060 280 35 7 chr4 187679923 187680387 -14647960 + L1M1 LINE L1 2007 2483 -4082 843 266 18 0 chr4 187680392 187680610 -14647737 + L1M1 LINE L1 3962 4183 -3382 * 13300 208 43 16 chr4 187680609 187684215 -14644132 + L1MA6 LINE L1 2454 6244 -1475 302 0 26 0 chr4 187684215 187684253 -14644094 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 13300 208 43 16 chr4 187684253 187685770 -14642577 + L1MA6 LINE L1 6244 7719 0 755 82 0 16 chr4 187685884 187686006 -14642341 + (CTATT)n Simple_repeat Simple_repeat 3 122 0 216 0 0 0 chr4 187686098 187686122 -14642225 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 307 220 111 7 chr4 187686277 187686383 -14641964 + L1ME3A LINE L1 6000 6116 -54 556 174 216 20 chr4 187687192 187687396 -14640951 + L1MD3 LINE L1 6871 7112 -673 1907 249 82 42 chr4 187687458 187688130 -14640217 - L1MC3 LINE L1 -964 6821 6123 1163 292 74 41 chr4 187688297 187688931 -14639416 + L1MC4a LINE L1 6277 6931 -877 256 153 31 61 chr4 187689068 187689166 -14639181 + (TATAA)n Simple_repeat Simple_repeat 1 95 0 28 61 0 0 chr4 187689334 187689383 -14638964 + AT_rich Low_complexity Low_complexity 1 49 0 396 347 92 38 chr4 187689571 187689940 -14638407 + L1ME LINE L1 5272 5660 -461 224 226 19 0 chr4 187691844 187691897 -14636450 + CT-rich Low_complexity Low_complexity 2 55 0 740 310 94 56 chr4 187692146 187692699 -14635648 - L2 LINE L2 -1 3312 2728 2546 189 27 21 chr4 187692699 187693211 -14635136 - MLT2B2 LTR ERVL 0 515 1 740 310 94 56 chr4 187693211 187693382 -14634965 - L2 LINE L2 -585 2728 2565 232 189 38 19 chr4 187693573 187693626 -14634721 - MLT1C LTR MaLR 0 467 414 579 206 122 37 chr4 187693674 187693888 -14634459 - MLT1C LTR MaLR -227 240 9 4693 236 28 49 chr4 187693904 187695320 -14633027 - MLT1C-int LTR MaLR -1 1734 1 994 244 33 36 chr4 187695324 187695627 -14632720 - MLT1C LTR MaLR -4 463 162 774 214 24 74 chr4 187695635 187696008 -14632339 + L1MB8 LINE L1 3316 3656 -2490 * 1056 208 29 38 chr4 187696007 187696320 -14632027 + L1MB8 LINE L1 3864 4173 -1973 1225 279 99 29 chr4 187696359 187696843 -14631504 + MER77 LTR ERV1 41 558 -47 964 256 36 44 chr4 187696940 187697300 -14631047 + L1MB8 LINE L1 5025 5381 -765 2816 198 14 18 chr4 187697306 187697927 -14630420 + L1MB8 LINE L1 5554 6172 -6 242 203 81 0 chr4 187698357 187698431 -14629916 + L1ME4a LINE L1 5946 6025 -96 360 316 87 51 chr4 187698544 187698819 -14629528 + HAL1b LINE L1 432 716 -632 234 0 0 0 chr4 187698902 187698928 -14629419 + (CA)n Simple_repeat Simple_repeat 1 26 0 29765 47 5 1 chr4 187699296 187703827 -14624520 - L1PA5 LINE L1 -11 6143 1594 25 0 0 0 chr4 187704115 187704140 -14624207 + AT_rich Low_complexity Low_complexity 1 25 0 471 346 62 29 chr4 187705315 187705624 -14622723 - L3 LINE CR1 -155 1422 1104 248 344 83 42 chr4 187705950 187706142 -14622205 - L2 LINE L2 -829 2485 2286 232 271 65 28 chr4 187706941 187707048 -14621299 - L1M4b LINE L1 -5416 1443 1333 199 349 193 24 chr4 187707376 187707625 -14620722 - L3 LINE CR1 -981 596 306 23 54 0 0 chr4 187709540 187709577 -14618770 + AT_rich Low_complexity Low_complexity 1 37 0 197 244 22 0 chr4 187709752 187709797 -14618550 - MIR3 SINE MIR -42 166 121 23 0 0 0 chr4 187710040 187710063 -14618284 + AT_rich Low_complexity Low_complexity 1 23 0 1991 112 3 7 chr4 187710063 187710368 -14617979 - L1PB1 LINE L1 -2 6149 5846 1292 234 168 46 chr4 187710518 187711083 -14617264 + MLT1E1 LTR MaLR 19 652 -2 261 303 81 10 chr4 187711232 187711331 -14617016 - L2 LINE L2 -1 3312 3207 25 0 0 0 chr4 187711481 187711506 -14616841 + AT_rich Low_complexity Low_complexity 1 25 0 214 141 70 0 chr4 187711564 187711635 -14616712 + (TTAA)n Simple_repeat Simple_repeat 1 76 0 1383 207 42 25 chr4 187711870 187712275 -14616072 + LTR37A LTR ERV1 12 423 -3 1326 205 60 137 chr4 187712573 187713119 -14615228 + MLT1D LTR MaLR 1 504 -1 234 0 0 0 chr4 187713676 187713702 -14614645 + (TG)n Simple_repeat Simple_repeat 2 27 0 * 335 0 73 0 chr4 187713701 187713756 -14614591 + (TA)n Simple_repeat Simple_repeat 1 59 0 420 200 0 0 chr4 187713763 187713838 -14614509 - AluJ/FRAM SINE Alu -24 288 214 * 652 250 0 0 chr4 187713834 187713982 -14614365 - FRAM SINE Alu -28 148 1 21 0 0 0 chr4 187716000 187716021 -14612326 + AT_rich Low_complexity Low_complexity 1 21 0 252 59 0 0 chr4 187716967 187717001 -14611346 + (TG)n Simple_repeat Simple_repeat 1 34 0 246 62 0 0 chr4 187717038 187717070 -14611277 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 21 36 0 0 chr4 187717189 187717217 -14611130 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 187717621 187717642 -14610705 + AT_rich Low_complexity Low_complexity 1 21 0 250 333 36 55 chr4 187719049 187719214 -14609133 - L2 LINE L2 0 3313 3152 567 264 0 29 chr4 187719448 187719615 -14608732 + AluJb SINE Alu 149 311 0 197 276 83 119 chr4 187719956 187720318 -14608029 - L2 LINE L2 -2789 525 177 241 337 102 0 chr4 187720440 187720538 -14607809 + MIR SINE MIR 43 150 -58 2246 104 0 0 chr4 187720619 187720916 -14607431 - AluSg SINE Alu -13 297 1 1663 186 44 28 chr4 187723773 187724133 -14604214 - MER47A DNA MER2_type 0 366 1 440 327 25 10 chr4 187724263 187724462 -14603885 - MIR SINE MIR 0 262 61 754 255 178 38 chr4 187724810 187725289 -14603058 + L1ME1 LINE L1 4704 5249 -897 2258 129 10 6 chr4 187725377 187725732 -14602615 - THE1B LTR MaLR -9 417 1 2234 279 17 41 chr4 187725732 187726627 -14601720 + L1ME1 LINE L1 5268 6140 -26 213 139 0 0 chr4 187726765 187726808 -14601539 + (GA)n Simple_repeat Simple_repeat 1 43 0 2227 104 0 3 chr4 187726929 187727227 -14601120 + AluSx SINE Alu 3 299 -13 2251 120 0 0 chr4 187729361 187729670 -14598677 + AluSx SINE Alu 1 309 -3 1887 169 55 42 chr4 187730303 187730850 -14597497 + MLT2A2 LTR ERVL 1 554 0 21 36 0 0 chr4 187731091 187731119 -14597228 + AT_rich Low_complexity Low_complexity 1 28 0 188 67 33 0 chr4 187733194 187733224 -14595123 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 33 25 0 0 chr4 187733801 187733841 -14594506 + AT_rich Low_complexity Low_complexity 1 40 0 979 256 107 15 chr4 187733841 187734232 -14594115 - LTR37B LTR ERV1 -41 427 1 26 30 0 0 chr4 187734254 187734287 -14594060 + AT_rich Low_complexity Low_complexity 1 33 0 232 37 0 0 chr4 187734464 187734491 -14593856 - MLT2B1 LTR ERVL -2 462 436 201 133 0 0 chr4 187734704 187734734 -14593613 + (TG)n Simple_repeat Simple_repeat 1 30 0 1674 231 108 33 chr4 187734734 187735162 -14593185 - MLT2B1 LTR ERVL -59 461 2 513 335 150 13 chr4 187735220 187735593 -14592754 + L2 LINE L2 2889 3312 -1 1415 158 22 18 chr4 187735856 187736128 -14592219 - L1PA16 LINE L1 -18 6148 5876 22 70 0 0 chr4 187736966 187737009 -14591338 + AT_rich Low_complexity Low_complexity 1 43 0 24 53 0 0 chr4 187737141 187737179 -14591168 + AT_rich Low_complexity Low_complexity 1 38 0 2074 134 10 0 chr4 187738086 187738393 -14589954 + AluSx SINE Alu 1 310 -2 2095 117 0 0 chr4 187738712 187739032 -14589315 + AluSq SINE Alu 1 320 0 639 141 0 0 chr4 187739710 187739802 -14588545 + FRAM SINE Alu 8 99 -77 28 0 0 0 chr4 187739906 187739934 -14588413 + AT_rich Low_complexity Low_complexity 1 28 0 262 311 58 16 chr4 187740133 187740390 -14587957 - L1ME LINE L1 -252 5869 5602 180 176 0 0 chr4 187740519 187740553 -14587794 + (TATATG)n Simple_repeat Simple_repeat 6 39 0 256 327 36 65 chr4 187741941 187742109 -14586238 + L2 LINE L2 3149 3311 -2 1765 182 0 0 chr4 187742165 187742456 -14585891 - AluSx SINE Alu -21 291 1 1911 185 43 37 chr4 187742937 187743374 -14584973 + L1MA10 LINE L1 5894 6333 -1 1214 253 10 10 chr4 187743726 187744022 -14584325 + AluJo SINE Alu 1 296 -6 30 77 0 0 chr4 187744234 187744299 -14584048 + AT_rich Low_complexity Low_complexity 1 65 0 216 195 37 37 chr4 187746018 187746100 -14582247 + (TAA)n Simple_repeat Simple_repeat 2 83 0 695 132 18 0 chr4 187746397 187746511 -14581836 + LTR9B LTR ERV1 445 560 -84 2171 117 13 0 chr4 187746603 187746910 -14581437 + AluSq SINE Alu 1 311 -2 22 35 0 0 chr4 187747488 187747517 -14580830 + AT_rich Low_complexity Low_complexity 1 29 0 1572 149 31 78 chr4 187747924 187748245 -14580102 + AluJo SINE Alu 7 312 0 22 0 0 0 chr4 187748637 187748659 -14579688 + AT_rich Low_complexity Low_complexity 1 22 0 1710 127 42 14 chr4 187748827 187749111 -14579236 + AluSx SINE Alu 1 292 -20 188 67 33 0 chr4 187749116 187749146 -14579201 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 2111 109 0 0 chr4 187749703 187750023 -14578324 - AluSx SINE Alu 0 320 1 1370 128 47 8 chr4 187750825 187751059 -14577288 - THE1C LTR MaLR -132 243 1 941 225 41 5 chr4 187752556 187752825 -14575522 - MER21B LTR ERV1 -518 345 35 24 0 0 0 chr4 187753105 187753129 -14575218 + AT_rich Low_complexity Low_complexity 1 24 0 1965 100 3 28 chr4 187753418 187753707 -14574640 - AluSx SINE Alu -30 282 1 314 328 17 25 chr4 187754214 187754333 -14574014 + L2 LINE L2 3192 3309 -4 344 347 88 37 chr4 187754735 187755248 -14573099 - L2 LINE L2 -694 2620 2082 615 313 178 31 chr4 187755706 187756150 -14572197 + L2 LINE L2 2804 3312 -1 1797 177 11 32 chr4 187756738 187757116 -14571231 + MER83C LTR ERV1 4 373 0 3404 253 64 41 chr4 187757116 187757377 -14570970 + MER83C-int LTR ERV1 12 266 -4657 2383 76 0 22 chr4 187757377 187757691 -14570656 - AluY SINE Alu -3 308 2 3404 253 64 41 chr4 187757691 187758657 -14569690 + MER83C-int LTR ERV1 266 1051 -3872 2061 177 16 18 chr4 187758802 187759213 -14569134 + MER83C-int LTR ERV1 4525 4859 -21 2113 149 11 19 chr4 187759230 187759606 -14568741 + MER83C LTR ERV1 1 373 0 1720 187 94 19 chr4 187759749 187760123 -14568224 - MSTC LTR MaLR -4 424 23 261 316 90 16 chr4 187761089 187761333 -14567014 + HAL1 LINE L1 1284 1545 -962 598 280 126 54 chr4 187761395 187761935 -14566412 + L1MC4a LINE L1 5319 5897 -1911 330 286 99 47 chr4 187762088 187762451 -14565896 + L1MC4a LINE L1 6120 6501 -1307 246 273 0 45 chr4 187762662 187762750 -14565597 + L1MC4 LINE L1 6619 6702 -1340 270 275 44 0 chr4 187763371 187763462 -14564885 + L1ME LINE L1 5542 5636 -485 197 271 21 0 chr4 187764068 187764116 -14564231 + MIR SINE MIR 120 168 -94 2159 129 0 3 chr4 187764230 187764540 -14563807 - AluSc SINE Alu 0 309 1 249 224 0 0 chr4 187768077 187768126 -14560221 + MIR SINE MIR 184 232 -30 26 50 0 0 chr4 187769150 187769190 -14559157 + AT_rich Low_complexity Low_complexity 1 40 0 402 330 13 19 chr4 187769221 187769536 -14558811 - AluSp SINE Alu 0 313 1 35 24 0 0 chr4 187769593 187769635 -14558712 + AT_rich Low_complexity Low_complexity 1 42 0 2166 117 0 0 chr4 187769824 187770122 -14558225 - AluSq SINE Alu -15 298 1 460 330 129 56 chr4 187770404 187770938 -14557409 + MLT2F LTR ERVL 39 611 -52 21 36 0 0 chr4 187771432 187771460 -14556887 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 187772325 187772354 -14555993 + AT_rich Low_complexity Low_complexity 1 29 0 243 60 60 0 chr4 187774113 187774163 -14554184 + T-rich Low_complexity Low_complexity 2 54 0 1062 47 0 0 chr4 187774163 187774290 -14554057 - AluY SINE Alu -184 127 1 248 169 42 70 chr4 187775418 187775489 -14552858 + L1MB8 LINE L1 5033 5101 -1045 1947 163 106 7 chr4 187775527 187775963 -14552384 + L1MB8 LINE L1 5694 6172 -6 269 297 0 90 chr4 187776296 187776407 -14551940 + L1MDa LINE L1 831 931 -5599 1414 199 6 43 chr4 187776674 187776816 -14551531 + AluJo SINE Alu 1 147 -165 2139 121 3 6 chr4 187776816 187777129 -14551218 + AluSx SINE Alu 1 312 0 1414 199 6 43 chr4 187777129 187777308 -14551039 + AluJo SINE Alu 147 310 -2 21 0 0 0 chr4 187777484 187777505 -14550842 + AT_rich Low_complexity Low_complexity 1 21 0 693 293 34 46 chr4 187777560 187777799 -14550548 - MIR SINE MIR -26 236 1 220 261 67 67 chr4 187778040 187778159 -14550188 + L2 LINE L2 3098 3216 -97 369 283 107 55 chr4 187778906 187779221 -14549126 + L1MDa LINE L1 1559 1963 -938 263 212 94 12 chr4 187779238 187779323 -14549024 + L1MDa LINE L1 1900 1991 -4730 3398 83 17 2 chr4 187779840 187780321 -14548026 - L1PA13 LINE L1 -3 6160 5673 1100 344 66 31 chr4 187780559 187781454 -14546893 + ERVL LTR ERVL 1785 2710 -3054 26 0 0 0 chr4 187781536 187781562 -14546785 + AT_rich Low_complexity Low_complexity 1 26 0 394 343 83 20 chr4 187781586 187781985 -14546362 + ERVL LTR ERVL 2876 3299 -2186 283 230 191 24 chr4 187782145 187782271 -14546076 - L1ME LINE L1 -376 5790 5644 1979 59 42 63 chr4 187782736 187783054 -14545293 + AluY SINE Alu 2 313 0 22 88 0 0 chr4 187783348 187783405 -14544942 + AT_rich Low_complexity Low_complexity 1 57 0 29 47 0 0 chr4 187783442 187783485 -14544862 + AT_rich Low_complexity Low_complexity 1 43 0 257 212 101 71 chr4 187834584 187834683 -14493664 + MIR SINE MIR 89 190 -72 1725 166 20 3 chr4 187834937 187835233 -14493114 + AluSx SINE Alu 1 301 -11 24 0 0 0 chr4 187835269 187835293 -14493054 + AT_rich Low_complexity Low_complexity 1 24 0 229 340 57 50 chr4 187836846 187836987 -14491360 + MER5A DNA MER1_type 46 187 -2 827 203 41 35 chr4 187837025 187837222 -14491125 + MLT1B LTR MaLR 193 390 0 261 186 34 178 chr4 187837260 187837378 -14490969 + MER5A DNA MER1_type 86 186 -3 442 317 102 27 chr4 187837662 187837848 -14490499 - MIR3 SINE MIR -8 200 1 999 191 65 6 chr4 187838125 187838395 -14489952 + MLT1A1 LTR MaLR 1 340 -25 325 127 0 0 chr4 187840780 187840835 -14487512 - L1MC5 LINE L1 -722 7239 7185 * 379 217 102 24 chr4 187840828 187840994 -14487353 + L1ME4a LINE L1 5922 6100 -21 699 218 65 42 chr4 187841276 187841537 -14486810 - L1MC5 LINE L1 -58 7903 7637 1411 199 131 116 chr4 187841537 187842071 -14486276 - MLT1E LTR MaLR 0 593 1 238 252 19 29 chr4 187842072 187842175 -14486172 - L1MC5 LINE L1 -321 7640 7539 2393 72 0 3 chr4 187842281 187842585 -14485762 - AluY SINE Alu -8 303 1 460 332 32 44 chr4 187842623 187842873 -14485474 + L2 LINE L2 3066 3312 -1 272 338 0 0 chr4 187843227 187843295 -14485052 - L2 LINE L2 0 3313 3246 25 31 0 0 chr4 187843794 187843826 -14484521 + AT_rich Low_complexity Low_complexity 1 32 0 1228 290 38 1 chr4 187844042 187844649 -14483698 + L1ME1 LINE L1 4856 5489 -748 1223 114 16 5 chr4 187844650 187844834 -14483513 + AluSp SINE Alu 111 296 -17 1020 266 59 84 chr4 187844834 187845572 -14482775 + L1ME1 LINE L1 5478 6176 -2 743 245 52 37 chr4 187845584 187846002 -14482345 + L1MC3 LINE L1 5006 5427 -739 708 227 64 41 chr4 187846153 187846325 -14482022 + MER20 DNA MER1_type 44 219 0 402 21 0 0 chr4 187846435 187846482 -14481865 + (CA)n Simple_repeat Simple_repeat 2 48 0 239 216 29 49 chr4 187846640 187846742 -14481605 - L1MEc LINE L1 -4927 1469 1370 398 259 75 34 chr4 187846972 187847265 -14481082 - L1MEc LINE L1 -5222 1174 870 2264 274 52 60 chr4 187847479 187848408 -14479939 + L1MC3 LINE L1 5745 6661 -1124 333 0 0 0 chr4 187848408 187848445 -14479902 + (TG)n Simple_repeat Simple_repeat 2 38 0 2264 274 52 60 chr4 187848445 187848835 -14479512 + L1MC3 LINE L1 6661 7053 -732 5726 158 15 15 chr4 187848953 187850628 -14477719 - L1MA2 LINE L1 -122 6182 4509 3968 101 40 2 chr4 187850628 187851211 -14477136 - LTR14B LTR ERVK 0 608 4 5726 158 15 15 chr4 187851211 187851387 -14476960 - L1MA2 LINE L1 -1795 4509 4326 1849 154 3 22 chr4 187851387 187851698 -14476649 + AluY SINE Alu 1 305 -6 5726 158 15 15 chr4 187851698 187851792 -14476555 - L1MA2 LINE L1 -1978 4326 4234 356 215 25 0 chr4 187851896 187851975 -14476372 + MLT1F1 LTR MaLR 45 125 -442 1608 255 62 36 chr4 187851979 187852531 -14475816 + L1MD3 LINE L1 7407 7972 -23 442 249 158 28 chr4 187853112 187853202 -14475145 + LTR33 LTR ERVL 228 305 -216 2301 133 20 23 chr4 187853202 187853592 -14474755 + MLT1B LTR MaLR 1 389 -1 442 249 158 28 chr4 187853592 187853678 -14474669 + LTR33 LTR ERVL 305 427 -94 1757 111 3 34 chr4 187853823 187854114 -14474233 + L1PB1 LINE L1 5867 6148 -3 226 237 113 21 chr4 187855695 187855792 -14472555 + MIR SINE MIR 147 252 -10 2269 105 0 0 chr4 187856519 187856825 -14471522 + AluSc SINE Alu 1 306 -3 368 329 76 49 chr4 187857525 187857893 -14470454 - HERVL LTR ERVL -1700 3954 3577 313 364 55 6 chr4 187858033 187858198 -14470149 - HAL1b LINE L1 -846 502 330 229 276 135 41 chr4 187858648 187858818 -14469529 - L2 LINE L2 -9 3304 3119 2041 81 7 7 chr4 187859398 187859669 -14468678 - AluY SINE Alu -19 292 22 560 288 96 15 chr4 187860203 187860401 -14467946 - MIR SINE MIR -48 214 1 200 67 0 133 chr4 187860855 187860900 -14467447 + (A)n Simple_repeat Simple_repeat 1 39 0 232 273 38 153 chr4 187861447 187861656 -14466691 + MIR SINE MIR 17 201 -61 2716 94 8 5 chr4 187862636 187863010 -14465337 + THE1C LTR MaLR 1 375 0 262 278 62 52 chr4 187863043 187863140 -14465207 - L2 LINE L2 -16 3297 3200 1738 172 39 12 chr4 187863331 187863668 -14464679 - MER7A DNA MER2_type -1 345 2 2010 162 126 5 chr4 187863782 187864164 -14464183 + MSTA LTR MaLR 1 428 0 528 303 6 11 chr4 187864458 187864633 -14463714 + LTR40c LTR ERVL 15 188 -277 263 350 88 8 chr4 187864647 187864910 -14463437 - LTR33 LTR ERVL -214 307 24 234 277 15 15 chr4 187864912 187864977 -14463370 + L2 LINE L2 3208 3272 0 1672 216 46 27 chr4 187865447 187865859 -14462488 - MER70B LTR ERVL -67 511 92 983 251 44 33 chr4 187866009 187866284 -14462063 + MLT1E2 LTR MaLR 1 278 -348 215 302 62 16 chr4 187866742 187866871 -14461476 - MIR SINE MIR -42 220 86 29 0 0 0 chr4 187868304 187868333 -14460014 + AT_rich Low_complexity Low_complexity 1 29 0 240 183 67 0 chr4 187869367 187869427 -14458920 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 262 152 0 0 chr4 187869427 187869473 -14458874 + L1MC4 LINE L1 6658 6703 -1339 1606 259 88 34 chr4 187869648 187870242 -14458105 + MLT1E2 LTR MaLR 1 626 0 319 264 56 62 chr4 187870890 187871034 -14457313 + MER5A DNA MER1_type 47 189 0 284 315 16 24 chr4 187871549 187871676 -14456671 + MLT1K LTR MaLR 436 561 -27 222 281 16 16 chr4 187871874 187871938 -14456409 + MER5A DNA MER1_type 2 65 -124 2229 138 28 14 chr4 187872107 187872461 -14455886 - THE1B LTR MaLR -2 362 4 10961 106 12 16 chr4 187872465 187874036 -14454311 - THE1B-int LTR MaLR -6 1574 10 2188 151 31 14 chr4 187874044 187874402 -14453945 - THE1B LTR MaLR 0 364 1 21 71 0 0 chr4 187875296 187875338 -14453009 + AT_rich Low_complexity Low_complexity 1 42 0 2392 276 103 12 chr4 187875468 187876589 -14451758 - L1M4 LINE L1 -946 5200 3978 2549 246 45 62 chr4 187876662 187878713 -14449634 - L1MCb LINE L1 -4346 2399 210 2080 122 0 0 chr4 187878805 187879099 -14449248 + AluSx SINE Alu 2 295 -17 24 53 0 0 chr4 187879124 187879162 -14449185 + AT_rich Low_complexity Low_complexity 1 38 0 197 339 46 54 chr4 187879447 187879577 -14448770 + L2 LINE L2 2631 2759 -555 24 0 0 0 chr4 187880219 187880243 -14448104 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr4 187882234 187882267 -14446080 + AT_rich Low_complexity Low_complexity 1 33 0 266 256 35 0 chr4 187882282 187882368 -14445979 - L1MC/D LINE L1 -2027 5781 5693 32 43 0 0 chr4 187882820 187882866 -14445481 + AT_rich Low_complexity Low_complexity 1 46 0 24 32 0 0 chr4 187883946 187883977 -14444370 + AT_rich Low_complexity Low_complexity 1 31 0 502 284 76 15 chr4 187884114 187884311 -14444036 - MIR SINE MIR 0 262 54 22 56 0 0 chr4 187884344 187884380 -14443967 + AT_rich Low_complexity Low_complexity 1 36 0 367 300 15 8 chr4 187884949 187885079 -14443268 - MARNA DNA Mariner -313 273 143 5091 58 17 3 chr4 187885762 187886415 -14441932 + L1PA7 LINE L1 5493 6154 0 34 0 0 0 chr4 187886959 187886993 -14441354 + AT_rich Low_complexity Low_complexity 1 34 0 233 250 0 0 chr4 187887136 187887188 -14441159 + MER5A DNA MER1_type 55 106 -83 27459 136 10 68 chr4 187887765 187893123 -14435224 + L1P LINE L1 1 5045 -1101 2565 226 76 53 chr4 187893127 187894586 -14433761 + L1MD1 LINE L1 4740 6226 -16 2068 113 0 0 chr4 187894621 187894927 -14433420 - AluSx SINE Alu 0 306 1 403 275 150 50 chr4 187895038 187895198 -14433149 + MER5A DNA MER1_type 14 189 0 23 0 0 0 chr4 187895675 187895698 -14432649 + AT_rich Low_complexity Low_complexity 1 23 0 3830 188 17 6 chr4 187896011 187897274 -14431073 - L1 LINE L1 -3267 4298 3020 1643 205 11 22 chr4 187897376 187897737 -14430610 - L1 LINE L1 -1950 4196 3840 4368 188 6 24 chr4 187897749 187898713 -14429634 - L1 LINE L1 -2090 5475 4529 8888 144 40 22 chr4 187898833 187900067 -14428280 - L1 LINE L1 -4174 3391 2118 1604 103 91 0 chr4 187900067 187900358 -14427989 + AluSg SINE Alu 29 340 0 8888 144 40 22 chr4 187900358 187900765 -14427582 - L1 LINE L1 -5447 2118 1720 3207 154 2 29 chr4 187900760 187900903 -14427444 + THE1A-int LTR MaLR 1014 1159 -421 * 2194 141 8 6 chr4 187900903 187901257 -14427090 + THE1A LTR MaLR 1 355 0 10382 119 6 13 chr4 187901257 187902848 -14425499 + THE1A-int LTR MaLR 1 1580 0 2064 135 14 20 chr4 187902848 187903203 -14425144 + THE1A LTR MaLR 1 353 -2 3207 154 2 29 chr4 187903203 187903607 -14424740 + THE1A-int LTR MaLR 1156 1548 -32 1646 162 150 6 chr4 187903609 187903936 -14424411 + MSTA LTR MaLR 7 380 -48 1574 182 34 45 chr4 187903937 187904316 -14424031 + THE1C LTR MaLR 1 375 0 255 177 0 0 chr4 187904591 187904653 -14423694 + CT-rich Low_complexity Low_complexity 2 63 0 258 307 69 0 chr4 187904682 187904827 -14423520 - L1ME LINE L1 -552 5612 5458 188 378 27 18 chr4 187906342 187906453 -14421894 + MIR3 SINE MIR 45 156 -52 248 351 0 0 chr4 187906643 187906720 -14421627 - L2 LINE L2 -18 3254 3178 1303 201 31 3 chr4 187907036 187907324 -14421023 - L1MB1 LINE L1 0 6168 5873 1414 158 16 24 chr4 187907325 187907571 -14420776 - THE1C LTR MaLR 0 375 132 922 86 0 0 chr4 187907580 187907697 -14420650 + AluY SINE Alu 186 302 -9 2571 226 14 17 chr4 187907698 187908292 -14420055 + L1 LINE L1 3520 4111 -2035 27 49 0 0 chr4 187908635 187908676 -14419671 + AT_rich Low_complexity Low_complexity 1 41 0 324 311 70 33 chr4 187909304 187909606 -14418741 - L1ME LINE L1 -1530 4616 4304 1412 248 12 17 chr4 187909660 187910075 -14418272 - L1M4 LINE L1 -1286 4860 4448 532 339 137 36 chr4 187910095 187910600 -14417747 - HAL1b LINE L1 -542 806 251 273 250 45 0 chr4 187911162 187911250 -14417097 + ERVL LTR ERVL 2279 2370 -3394 2005 274 40 38 chr4 187912144 187913104 -14415243 + L1ME1 LINE L1 5209 6330 -4 1167 312 147 27 chr4 187913106 187914016 -14414331 + L2 LINE L2 2218 3243 -70 22 99 0 0 chr4 187914893 187914964 -14413383 + AT_rich Low_complexity Low_complexity 1 71 0 200 194 16 32 chr4 187914964 187915026 -14413321 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 1958 138 3 10 chr4 187915423 187915721 -14412626 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr4 187915900 187915921 -14412426 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr4 187917939 187917962 -14410385 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 387 283 73 26 chr4 187918789 187918980 -14409367 - Charlie1a DNA MER1_type -987 468 269 2190 92 0 0 chr4 187918992 187919275 -14409072 - AluSc SINE Alu -26 283 1 445 295 168 12 chr4 187919276 187919449 -14408898 - Charlie1a DNA MER1_type -1255 200 1 273 362 13 7 chr4 187920358 187920510 -14407837 - L1M4 LINE L1 -2224 3922 3770 3565 156 25 60 chr4 187920521 187921361 -14406986 - L1MA8 LINE L1 -5 6286 5476 2118 82 3 17 chr4 187921448 187921776 -14406571 - AluSc SINE Alu 0 309 1 7981 195 25 6 chr4 187921778 187923582 -14404765 - L1MA8 LINE L1 -743 5403 3641 1682 193 37 0 chr4 187923576 187923959 -14404388 + L1MA8 LINE L1 3243 3639 -2507 * 520 314 55 41 chr4 187923976 187924486 -14403861 - L1M4 LINE L1 -2387 3759 3243 556 298 34 53 chr4 187925095 187925357 -14402990 + L1MCb LINE L1 309 565 -5480 21 0 0 0 chr4 187925472 187925493 -14402854 + AT_rich Low_complexity Low_complexity 1 21 0 2103 239 79 58 chr4 187925512 187926208 -14402139 + L1MCb LINE L1 569 1249 -5315 848 226 25 117 chr4 187926208 187926610 -14401737 + MLT1A1 LTR MaLR 1 365 0 2103 239 79 58 chr4 187926610 187926907 -14401440 + L1MCb LINE L1 1249 1538 -5026 327 49 0 0 chr4 187926907 187926948 -14401399 + (CA)n Simple_repeat Simple_repeat 2 42 0 2103 239 79 58 chr4 187926948 187927431 -14400916 + L1MCb LINE L1 1538 2010 -4554 2021 124 0 0 chr4 187927431 187927714 -14400633 + AluSx SINE Alu 16 298 -14 2103 239 79 58 chr4 187927714 187927793 -14400554 + L1MCb LINE L1 2010 2086 -4478 2136 112 0 0 chr4 187927793 187928089 -14400258 - AluY SINE Alu -15 296 1 2103 239 79 58 chr4 187928089 187928275 -14400072 + L1MCb LINE L1 2086 2493 -4071 24 32 0 0 chr4 187928319 187928350 -14399997 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 187928379 187928403 -14399944 + AT_rich Low_complexity Low_complexity 1 24 0 1600 179 21 3 chr4 187928778 187929068 -14399279 - AluJo SINE Alu -17 295 1 23 0 0 0 chr4 187930009 187930032 -14398315 + AT_rich Low_complexity Low_complexity 1 23 0 3336 197 53 10 chr4 187930382 187931084 -14397263 + MER44D DNA MER2_type 1 604 -1 491 169 24 0 chr4 187931179 187931262 -14397085 - FRAM SINE Alu -30 146 62 439 122 12 12 chr4 187931416 187931498 -14396849 + Tigger3(Golem) DNA MER2_type 2721 2802 -227 * 2144 221 168 19 chr4 187931495 187931743 -14396604 - Tigger7 DNA MER2_type -69 664 454 1501 200 30 3 chr4 187931743 187932043 -14396304 + AluJb SINE Alu 1 308 -4 2144 221 168 19 chr4 187932043 187932372 -14395975 - Tigger7 DNA MER2_type -279 454 1 240 136 0 0 chr4 187932759 187932803 -14395544 - MLT1E1 LTR MaLR 0 654 611 * 300 258 108 42 chr4 187932800 187932920 -14395427 - MLT1E3 LTR MaLR -496 128 1 1985 113 6 52 chr4 187933105 187933433 -14394914 + AluSp SINE Alu 1 313 0 314 298 168 0 chr4 187933942 187934073 -14394274 - MIR SINE MIR -103 159 7 314 323 0 0 chr4 187934139 187934238 -14394109 + L1ME3A LINE L1 5795 5893 -277 242 261 92 52 chr4 187936304 187936457 -14391890 + MIR SINE MIR 104 262 0 464 271 74 44 chr4 187936672 187936875 -14391472 + MER76 LTR ERV 480 688 0 22 35 0 0 chr4 187937207 187937236 -14391111 + AT_rich Low_complexity Low_complexity 1 29 0 4048 25 8 0 chr4 187937365 187937846 -14390501 - L1PA3 LINE L1 0 6155 5671 387 306 7 7 chr4 187938293 187938437 -14389910 + (TA)n Simple_repeat Simple_repeat 2 145 0 705 333 161 21 chr4 187938440 187939020 -14389327 - L2 LINE L2 -272 3041 2380 803 238 6 0 chr4 187939760 187939932 -14388415 + AluJb SINE Alu 131 303 -9 303 311 82 8 chr4 187940419 187940541 -14387806 - MIR SINE MIR -34 228 98 1790 154 35 3 chr4 187941126 187941411 -14386936 - AluSx SINE Alu -12 300 7 183 374 24 12 chr4 187942415 187942498 -14385849 + L2 LINE L2 3139 3222 -50 193 262 95 63 chr4 187942589 187942715 -14385632 - MER5B DNA MER1_type -1 177 48 9711 29 1 1 chr4 187943760 187945696 -14382651 + L1PA3 LINE L1 4215 6153 -2 190 269 11 118 chr4 187945780 187945844 -14382503 + MIR SINE MIR 110 163 -99 1751 187 7 7 chr4 187945844 187946149 -14382198 - AluSx SINE Alu -7 305 1 190 269 11 118 chr4 187946149 187946177 -14382170 + MIR SINE MIR 163 192 -70 1513 246 63 95 chr4 187946580 187947557 -14380790 - LTR28 LTR ERV1 -11 1009 1 215 343 0 0 chr4 187949120 187949193 -14379154 + GA-rich Low_complexity Low_complexity 5 77 0 2646 222 31 10 chr4 187949257 187949843 -14378504 - MER90 LTR ERV1 -14 600 3 203 250 39 39 chr4 187949846 187949898 -14378449 - L2 LINE L2 -8 3264 3213 25 65 0 0 chr4 187950146 187950192 -14378155 + AT_rich Low_complexity Low_complexity 1 46 0 294 286 121 15 chr4 187951319 187951518 -14376829 + L1MEc LINE L1 1263 1482 -4914 1909 138 14 14 chr4 187951547 187951844 -14376503 + AluSq SINE Alu 1 297 -16 2486 229 63 36 chr4 187951928 187952563 -14375784 + L1M4 LINE L1 4032 4705 -1441 197 33 33 0 chr4 187952563 187952593 -14375754 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 2486 229 63 36 chr4 187952593 187952953 -14375394 + L1M4 LINE L1 4705 5054 -1092 186 356 50 20 chr4 187952982 187953083 -14375264 - L2 LINE L2 -2903 411 308 529 72 0 0 chr4 187953226 187953295 -14375052 - Alu SINE Alu -232 77 9 1420 92 9 53 chr4 187953296 187953523 -14374824 + AluSg/x SINE Alu 89 305 -7 25 31 0 0 chr4 187954354 187954386 -14373961 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 187954465 187954486 -14373861 + AT_rich Low_complexity Low_complexity 1 21 0 2146 106 7 0 chr4 187955310 187955611 -14372736 - AluSg SINE Alu -7 303 1 3024 169 26 10 chr4 187956270 187956855 -14371492 - L1MC1 LINE L1 -8 6325 5732 662 288 36 40 chr4 187956964 187957590 -14370757 - L1ME3 LINE L1 -158 6004 5340 24 0 0 0 chr4 187958485 187958509 -14369838 + AT_rich Low_complexity Low_complexity 1 24 0 31 82 0 0 chr4 187958724 187958797 -14369550 + AT_rich Low_complexity Low_complexity 1 73 0 21 82 0 0 chr4 187958964 187959013 -14369334 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr4 187959045 187959073 -14369274 + AT_rich Low_complexity Low_complexity 1 28 0 5407 143 25 45 chr4 187959073 187960292 -14368055 - L1PA11 LINE L1 -2 6172 4972 5432 167 21 18 chr4 187960685 187961960 -14366387 - L1P4 LINE L1 -495 5670 4398 215 381 63 0 chr4 187962260 187962386 -14365961 - L2 LINE L2 -241 3031 2898 22 35 0 0 chr4 187962834 187962863 -14365484 + AT_rich Low_complexity Low_complexity 1 29 0 1599 164 66 6 chr4 187963152 187963470 -14364877 - L1PA16 LINE L1 -17 6149 5813 4801 162 56 39 chr4 187964571 187966093 -14362254 - L1MA4 LINE L1 -6 6294 4766 817 188 7 13 chr4 187966190 187966344 -14362003 - AluSx SINE Alu -159 153 1 629 150 108 0 chr4 187967172 187967292 -14361055 - FLAM_C SINE Alu 0 133 1 650 300 5 0 chr4 187967440 187967640 -14360707 + MER46C DNA MER2_type 117 317 -21 302 286 41 10 chr4 187968329 187968427 -14359920 + MIR SINE MIR 67 167 -95 288 162 14 81 chr4 187968735 187968809 -14359538 + MLT1D LTR MaLR 418 486 -19 21 0 0 0 chr4 187969255 187969276 -14359071 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr4 187969447 187969490 -14358857 + AT_rich Low_complexity Low_complexity 1 43 0 216 0 0 0 chr4 187969721 187969745 -14358602 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1281 189 100 0 chr4 187969748 187969997 -14358350 - AluJb SINE Alu -38 274 1 1210 285 75 18 chr4 187970061 187970577 -14357770 - MER77 LTR ERV1 -11 594 78 26 64 0 0 chr4 187970603 187970650 -14357697 + AT_rich Low_complexity Low_complexity 1 47 0 1070 302 4 4 chr4 187971554 187971829 -14356518 - LTR40a LTR ERVL 0 519 245 189 0 0 0 chr4 187971829 187971850 -14356497 + (T)n Simple_repeat Simple_repeat 1 21 0 262 231 0 0 chr4 187971888 187971940 -14356407 - LTR40a LTR ERVL -404 115 64 465 90 0 0 chr4 187972400 187972467 -14355880 + (CA)n Simple_repeat Simple_repeat 2 68 0 21 0 0 0 chr4 187972571 187972592 -14355755 + AT_rich Low_complexity Low_complexity 1 21 0 626 231 82 125 chr4 187972742 187973045 -14355302 + Cheshire DNA MER1_type 2 291 -2129 263 274 55 0 chr4 187973019 187973092 -14355255 + Cheshire DNA MER1_type 2340 2416 -4 * 28 0 0 0 chr4 187973341 187973369 -14354978 + AT_rich Low_complexity Low_complexity 1 28 0 198 313 0 15 chr4 187973892 187973959 -14354388 - MIR3 SINE MIR -24 184 119 25 0 0 0 chr4 187974177 187974202 -14354145 + AT_rich Low_complexity Low_complexity 1 25 0 31 0 0 0 chr4 187974448 187974479 -14353868 + AT_rich Low_complexity Low_complexity 1 31 0 323 105 18 0 chr4 187975021 187975078 -14353269 + (TG)n Simple_repeat Simple_repeat 2 59 0 354 236 38 168 chr4 187976539 187976937 -14351410 - L1MEc LINE L1 -3009 3206 2861 660 131 9 0 chr4 187977029 187977136 -14351211 - L1MB3 LINE L1 -3 6180 6073 1744 194 0 0 chr4 187977235 187977539 -14350808 - AluSx SINE Alu -8 304 1 230 296 112 0 chr4 187977561 187977659 -14350688 - L1MEc LINE L1 -3556 2659 2551 696 262 95 60 chr4 187977688 187978005 -14350342 - MER115 DNA AcHobo -5 688 361 2138 48 0 11 chr4 187978434 187978702 -14349645 + AluY SINE Alu 38 302 -9 330 281 115 42 chr4 187978769 187979029 -14349318 - L1MEc LINE L1 -4009 2387 2109 3746 169 77 10 chr4 187979118 187979895 -14348452 - L1PBa LINE L1 -5958 905 77 459 346 84 6 chr4 187979896 187980228 -14348119 - L2 LINE L2 -14 3299 2942 333 85 0 0 chr4 187980244 187980291 -14348056 - MADE1 DNA Mariner 0 80 34 2099 111 3 0 chr4 187982236 187982525 -14345822 + AluSx SINE Alu 1 290 -22 22 35 0 0 chr4 187982525 187982554 -14345793 + AT_rich Low_complexity Low_complexity 1 29 0 2383 70 0 0 chr4 187982790 187983088 -14345259 - AluY SINE Alu -13 298 1 213 224 0 0 chr4 187983102 187983160 -14345187 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 27 29 0 0 chr4 187983337 187983371 -14344976 + AT_rich Low_complexity Low_complexity 1 34 0 793 247 6 0 chr4 187983672 187983838 -14344509 + MLT1A1 LTR MaLR 197 363 -2 28 0 0 0 chr4 187984584 187984612 -14343735 + AT_rich Low_complexity Low_complexity 1 28 0 885 294 47 45 chr4 187985862 187986332 -14342015 - LTR38 LTR ERV1 0 556 86 21 89 0 0 chr4 187986494 187986550 -14341797 + AT_rich Low_complexity Low_complexity 1 56 0 294 307 161 47 chr4 187986989 187987263 -14341084 + L2 LINE L2 3009 3313 0 21 0 0 0 chr4 187987927 187987948 -14340399 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 187988926 187988947 -14339400 + AT_rich Low_complexity Low_complexity 1 21 0 228 67 0 0 chr4 187989050 187989080 -14339267 + (TA)n Simple_repeat Simple_repeat 2 31 0 28 48 0 0 chr4 187989176 187989218 -14339129 + AT_rich Low_complexity Low_complexity 1 42 0 264 239 0 28 chr4 187989234 187989305 -14339042 + (CATATA)n Simple_repeat Simple_repeat 5 73 0 25 31 0 0 chr4 187990828 187990860 -14337487 + AT_rich Low_complexity Low_complexity 1 32 0 502 351 82 29 chr4 187992616 187993202 -14335145 - MER110-int LTR ERV1 -1997 2650 2034 1874 133 42 3 chr4 187994317 187994603 -14333744 + AluSg SINE Alu 1 297 -13 381 348 84 65 chr4 187994834 187995068 -14333279 + L2 LINE L2 1344 1572 -1742 1807 176 7 0 chr4 187995068 187995375 -14332972 - AluSx SINE Alu 0 312 4 381 348 84 65 chr4 187995375 187995772 -14332575 + L2 LINE L2 1572 1987 -1327 22 56 0 0 chr4 187996085 187996121 -14332226 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr4 187996230 187996259 -14332088 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 187996883 187996906 -14331441 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr4 187997605 187997633 -14330714 + AT_rich Low_complexity Low_complexity 1 28 0 268 328 59 44 chr4 187997685 187998023 -14330324 + L1MCb LINE L1 29 371 -5674 342 282 82 59 chr4 187998392 187998612 -14329735 + L1MCb LINE L1 570 794 -5251 612 177 18 0 chr4 187999207 187999320 -14329027 + FRAM SINE Alu 4 118 -58 1310 275 68 68 chr4 188000387 188001097 -14327250 - L1ME2 LINE L1 -66 6098 5389 933 188 30 20 chr4 188001164 188001361 -14326986 - MER20 DNA MER1_type -17 202 4 1250 216 54 29 chr4 188001780 188002131 -14326216 - MLT1A1 LTR MaLR -2 363 4 23 33 0 0 chr4 188002462 188002492 -14325855 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr4 188002651 188002676 -14325671 + AT_rich Low_complexity Low_complexity 1 25 0 510 268 55 0 chr4 188002731 188002895 -14325452 - Charlie2a DNA MER1_type -1212 1650 1478 393 311 29 34 chr4 188003050 188003256 -14325091 - Charlie2a DNA MER1_type -2501 281 77 1389 253 13 11 chr4 188003335 188003707 -14324640 + MLT2D LTR ERVL 1 373 -41 254 135 39 0 chr4 188003707 188003759 -14324588 + (TATG)n Simple_repeat Simple_repeat 3 56 0 286 79 0 0 chr4 188003772 188003810 -14324537 + MLT2D LTR ERVL 352 389 -8 3216 125 47 2 chr4 188004084 188004573 -14323774 + MER9 LTR ERVK 1 511 0 23 0 0 0 chr4 188004822 188004845 -14323502 + AT_rich Low_complexity Low_complexity 1 23 0 3320 249 80 54 chr4 188004895 188007969 -14320378 - L1MDb LINE L1 -3464 2942 11 1985 143 0 17 chr4 188008034 188008334 -14320013 - AluSq SINE Alu -18 295 1 594 256 145 25 chr4 188010185 188010488 -14317859 - MER57A LTR ERV1 0 403 101 2463 63 0 0 chr4 188010953 188011253 -14317094 + AluY SINE Alu 1 300 -11 1166 253 95 38 chr4 188011373 188011847 -14316500 - MLT1D LTR MaLR 0 505 5 266 268 44 36 chr4 188012566 188012681 -14315666 + MLT1G LTR MaLR 170 285 -298 295 211 53 0 chr4 188012870 188012927 -14315420 - MIR SINE MIR -155 107 48 240 311 40 66 chr4 188013313 188013436 -14314911 - L2 LINE L2 -87 3226 3110 1823 164 14 27 chr4 188013436 188013802 -14314545 + MER46B DNA MER2_type 1 236 0 240 311 40 66 chr4 188013802 188013906 -14314441 - L2 LINE L2 -203 3110 3005 1678 172 4 0 chr4 188013910 188014177 -14314170 + AluSx SINE Alu 1 268 -44 476 309 185 25 chr4 188014396 188014959 -14313388 - L2 LINE L2 -652 2662 2010 1699 68 0 0 chr4 188016059 188016265 -14312082 - AluY SINE Alu -5 306 101 5167 69 46 7 chr4 188017555 188018023 -14310324 - MER4E LTR ERV1 0 766 257 180 0 0 0 chr4 188018023 188018043 -14310304 + (GGAA)n Simple_repeat Simple_repeat 1 20 0 5167 69 46 7 chr4 188018043 188018311 -14310036 - MER4E LTR ERV1 -509 257 1 21 0 0 0 chr4 188019324 188019345 -14309002 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 188019665 188019692 -14308655 + AT_rich Low_complexity Low_complexity 1 27 0 1265 240 118 50 chr4 188020001 188020476 -14307871 + MLT2B1 LTR ERVL 14 520 0 1982 293 71 63 chr4 188020605 188022070 -14306277 - L2 LINE L2 -6 3307 1832 1802 119 6 102 chr4 188022912 188023265 -14305082 - MER1B DNA MER1_type 0 339 21 26 50 0 0 chr4 188023757 188023797 -14304550 + AT_rich Low_complexity Low_complexity 1 40 0 28 48 0 0 chr4 188025251 188025293 -14303054 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr4 188025409 188025430 -14302917 + AT_rich Low_complexity Low_complexity 1 21 0 676 200 87 30 chr4 188025622 188025887 -14302460 + MER33 DNA MER1_type 1 280 -44 24 85 0 0 chr4 188025887 188025946 -14302401 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr4 188026333 188026354 -14301993 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr4 188026412 188026462 -14301885 + AT_rich Low_complexity Low_complexity 1 50 0 1494 182 95 50 chr4 188027703 188028082 -14300265 + MSTD LTR MaLR 1 396 0 279 261 65 11 chr4 188028147 188028239 -14300108 - LTR33 LTR ERVL -89 432 336 2050 130 3 7 chr4 188028319 188028627 -14299720 + AluSx SINE Alu 6 312 0 317 24 24 0 chr4 188028634 188028676 -14299671 + (CA)n Simple_repeat Simple_repeat 2 44 0 29 28 0 0 chr4 188029441 188029477 -14298870 + AT_rich Low_complexity Low_complexity 1 36 0 2137 138 100 8 chr4 188029500 188029890 -14298457 + MSTA LTR MaLR 1 426 -2 3508 115 54 27 chr4 188030109 188030701 -14297646 - MER4B LTR ERV1 0 610 3 230 197 42 42 chr4 188031309 188031380 -14296967 - L1ME LINE L1 -333 5906 5836 1224 249 110 14 chr4 188031514 188031859 -14296488 + LTR52 LTR ERVL 1 378 -43 421 299 43 48 chr4 188031896 188032206 -14296141 - L1ME LINE L1 -501 5689 5388 47 19 0 0 chr4 188032237 188032291 -14296056 + AT_rich Low_complexity Low_complexity 1 54 0 904 183 13 0 chr4 188032358 188032511 -14295836 - FRAM SINE Alu -13 163 9 350 311 196 30 chr4 188032523 188033358 -14294989 - L1ME LINE L1 -960 5255 4282 373 327 48 32 chr4 188033778 188034029 -14294318 - L1ME LINE L1 -4824 1572 1318 231 230 122 14 chr4 188034030 188034104 -14294243 + MER58 DNA MER1_type 2339 2420 0 48 49 0 29 chr4 188034194 188034296 -14294051 + AT_rich Low_complexity Low_complexity 1 99 0 240 221 0 78 chr4 188034527 188034604 -14293743 - L1ME LINE L1 -5637 568 498 449 250 51 73 chr4 188035589 188036035 -14292312 - MER34B LTR ERV1 0 542 189 2178 122 3 0 chr4 188036569 188036872 -14291475 + AluSx SINE Alu 1 304 -8 926 256 37 96 chr4 188041068 188041612 -14286735 - LTR49-int LTR ERV1 -5182 1149 638 477 293 87 29 chr4 188041623 188041865 -14286482 - LTR49-int LTR ERV1 -6094 707 452 4988 82 8 1 chr4 188041947 188042603 -14285744 + PABL_A LTR ERV1 1 660 0 1138 237 59 28 chr4 188042889 188043243 -14285104 - MLT1A1 LTR MaLR 0 365 1 731 249 48 72 chr4 188043326 188043867 -14284480 - MER34B LTR ERV1 -4 591 35 984 84 0 21 chr4 188044345 188044488 -14283859 + L1PA7 LINE L1 6015 6154 0 615 234 0 0 chr4 188045013 188045137 -14283210 - AluJb SINE Alu -54 258 135 27 49 0 0 chr4 188045523 188045564 -14282783 + AT_rich Low_complexity Low_complexity 1 41 0 255 61 0 0 chr4 188045631 188045664 -14282683 + (TG)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr4 188045836 188045859 -14282488 + AT_rich Low_complexity Low_complexity 1 23 0 2206 116 0 0 chr4 188047303 188047604 -14280743 - AluSg SINE Alu -9 301 1 22 0 0 0 chr4 188047850 188047872 -14280475 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr4 188048541 188048574 -14279773 + AT_rich Low_complexity Low_complexity 1 33 0 341 298 11 0 chr4 188048711 188048805 -14279542 + MIR SINE MIR 5 99 -163 198 289 13 26 chr4 188049279 188049355 -14278992 - MIR SINE MIR -5 257 183 512 194 139 7 chr4 188049363 188049507 -14278840 - MER52A LTR ERV1 0 1755 1593 969 252 19 121 chr4 188049534 188050273 -14278074 - MER52A LTR ERV1 -141 894 289 188 398 28 0 chr4 188050289 188050397 -14277950 - MIR SINE MIR -122 140 30 23 68 0 0 chr4 188050542 188050586 -14277761 + AT_rich Low_complexity Low_complexity 1 44 0 421 335 112 16 chr4 188051071 188051375 -14276972 - L3b LINE CR1 -28 1555 1223 1685 179 3 14 chr4 188051557 188051847 -14276500 + AluJo SINE Alu 1 287 -25 183 80 0 0 chr4 188051859 188051884 -14276463 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 944 265 5 0 chr4 188052338 188052561 -14275786 - MER58A DNA MER1_type 0 224 1 749 272 142 67 chr4 188052953 188053743 -14274604 + L2 LINE L2 2427 3271 -42 944 164 51 6 chr4 188053744 188054039 -14274308 + L1MB5 LINE L1 5840 6168 -6 1994 129 0 11 chr4 188054676 188054983 -14273364 - AluSx SINE Alu 0 304 1 1725 128 16 78 chr4 188056241 188056562 -14271785 - AluSg SINE Alu -3 307 7 1286 153 22 73 chr4 188056966 188057198 -14271149 - MSTB LTR MaLR -6 420 203 2203 111 0 7 chr4 188057198 188057496 -14270851 - AluSx SINE Alu -12 300 5 1286 153 22 73 chr4 188057496 188057538 -14270809 - MSTB LTR MaLR -223 203 160 3824 93 45 6 chr4 188057575 188058114 -14270233 - LTR9B LTR ERV1 -84 560 1 1782 143 0 0 chr4 188058116 188058382 -14269965 - HUERS-P3 LTR ERV1 -4 8915 8650 * 4469 113 9 15 chr4 188058381 188059038 -14269309 - HUERS-P3b LTR ERV1 -597 6821 6169 351 68 0 0 chr4 188059038 188059082 -14269265 + Alu SINE Alu 1 44 -257 1205 132 0 0 chr4 188059101 188059275 -14269072 - HUERS-P3b LTR ERV1 -1238 6180 6007 987 129 0 25 chr4 188059278 188059441 -14268906 - MSTB LTR MaLR -269 159 1 21 0 0 0 chr4 188060192 188060213 -14268134 + AT_rich Low_complexity Low_complexity 1 21 0 876 271 30 4 chr4 188060669 188060905 -14267442 + MLT1F1 LTR MaLR 323 564 -3 1133 247 34 14 chr4 188060947 188061389 -14266958 + L1MC/D LINE L1 2918 3368 -2778 1217 223 115 11 chr4 188061407 188061842 -14266505 + L1MC/D LINE L1 4391 4870 -1276 1352 179 30 13 chr4 188061853 188062168 -14266179 + L1MC/D LINE L1 5237 5556 -743 912 254 44 23 chr4 188062181 188062523 -14265824 + L1ME3A LINE L1 4787 5135 -1011 227 286 22 0 chr4 188062537 188062628 -14265719 + L1MCc LINE L1 1405 1497 -4926 2192 129 0 6 chr4 188063059 188063370 -14264977 + AluSx SINE Alu 1 309 -3 24 32 0 0 chr4 188063439 188063470 -14264877 + AT_rich Low_complexity Low_complexity 1 31 0 288 319 22 37 chr4 188064424 188064559 -14263788 + LTR67 LTR ERVL 3 135 -422 659 305 79 26 chr4 188064771 188065206 -14263141 + MLT1E3 LTR MaLR 6 494 -99 1111 330 75 6 chr4 188065281 188065751 -14262596 - L2 LINE L2 -621 2693 2192 1452 110 191 16 chr4 188065896 188066142 -14262205 + AluSg1 SINE Alu 1 289 -20 1570 268 53 54 chr4 188066236 188066996 -14261351 + L1ME3A LINE L1 5290 6048 -122 1945 163 10 7 chr4 188067316 188067622 -14260725 + AluSx SINE Alu 1 307 -5 2157 244 16 65 chr4 188068010 188068591 -14259756 - MLT2B3 LTR ERVL -2 552 1 1472 120 204 0 chr4 188068869 188069119 -14259228 + AluSx SINE Alu 2 302 0 3461 170 41 21 chr4 188069487 188070188 -14258159 - L1MC1 LINE L1 0 6333 5619 24 53 0 0 chr4 188070257 188070295 -14258052 + AT_rich Low_complexity Low_complexity 1 38 0 325 109 31 0 chr4 188071496 188071560 -14256787 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 2043 114 0 0 chr4 188071776 188072049 -14256298 + AluSc SINE Alu 21 293 -16 1924 191 55 33 chr4 188072377 188072573 -14255774 + Tigger2a DNA MER2_type 1 191 -2517 2095 114 6 32 chr4 188072573 188072888 -14255459 - AluSx SINE Alu -3 309 3 1924 191 55 33 chr4 188072888 188073110 -14255237 + Tigger2a DNA MER2_type 191 428 -6 290 369 38 6 chr4 188073400 188073557 -14254790 - MIR SINE MIR -100 162 1 209 227 0 13 chr4 188073843 188073918 -14254429 + (TATG)n Simple_repeat Simple_repeat 2 75 0 222 375 0 11 chr4 188074344 188074432 -14253915 + L2 LINE L2 3227 3313 0 683 231 10 88 chr4 188074773 188075081 -14253266 + L1MB7 LINE L1 4325 4608 -1538 721 246 121 10 chr4 188075082 188075371 -14252976 + L1MB7 LINE L1 5854 6174 -10 26 30 0 0 chr4 188075855 188075888 -14252459 + AT_rich Low_complexity Low_complexity 1 33 0 279 0 0 0 chr4 188075894 188075902 -14252445 + (TG)n Simple_repeat Simple_repeat 1 39 0 279 0 0 0 chr4 188075902 188075933 -14252414 + (TG)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr4 188076604 188076625 -14251722 + AT_rich Low_complexity Low_complexity 1 21 0 2252 81 3 7 chr4 188076625 188076922 -14251425 - AluY SINE Alu 0 311 16 26 0 0 0 chr4 188077345 188077371 -14250976 + AT_rich Low_complexity Low_complexity 1 26 0 29 47 0 0 chr4 188078049 188078092 -14250255 + AT_rich Low_complexity Low_complexity 1 43 0 23 68 0 0 chr4 188078197 188078241 -14250106 + AT_rich Low_complexity Low_complexity 1 44 0 723 267 52 26 chr4 188078453 188078685 -14249662 + L1M4 LINE L1 15 252 -6290 1742 252 18 46 chr4 188078765 188079308 -14249039 + L1M4 LINE L1 457 984 -5558 * 3512 186 11 27 chr4 188079304 188079453 -14248894 - L1 LINE L1 -2093 4053 3903 498 227 50 17 chr4 188079453 188079572 -14248775 - FLAM_A SINE Alu -8 125 3 3512 186 11 27 chr4 188079572 188080159 -14248188 - L1 LINE L1 -2243 3903 3329 4145 206 26 25 chr4 188080166 188081100 -14247247 + L1MA10 LINE L1 5371 6305 -29 2471 264 68 24 chr4 188081134 188082776 -14245571 + L1M4 LINE L1 976 2840 -3985 1953 157 0 0 chr4 188083008 188083313 -14245034 + AluJo SINE Alu 1 305 -7 351 0 0 0 chr4 188083751 188083790 -14244557 + (TG)n Simple_repeat Simple_repeat 2 40 0 2156 131 0 0 chr4 188083810 188084107 -14244240 - AluSx SINE Alu -15 297 1 297 191 11 64 chr4 188084340 188084434 -14243913 + L2 LINE L2 3225 3313 0 420 301 116 53 chr4 188085703 188086058 -14242289 - MLT1I LTR MaLR -4 405 29 192 191 43 0 chr4 188086343 188086390 -14241957 + MER5C DNA MER1_type 266 314 -10 3839 161 9 10 chr4 188086993 188087689 -14240658 + L1MA4 LINE L1 5599 6293 -7 24 67 0 0 chr4 188089248 188089293 -14239054 + AT_rich Low_complexity Low_complexity 1 45 0 26 30 0 0 chr4 188089888 188089921 -14238426 + AT_rich Low_complexity Low_complexity 1 33 0 1703 151 65 0 chr4 188090351 188090688 -14237659 - L1MA8 LINE L1 0 6291 5933 1199 212 41 38 chr4 188091228 188091664 -14236683 + MLT2D LTR ERVL 1 436 -28 382 287 28 9 chr4 188091687 188091795 -14236552 - MIR SINE MIR -121 141 32 1793 141 69 0 chr4 188092020 188092311 -14236036 + AluSx SINE Alu 1 311 -1 209 328 0 0 chr4 188092398 188092456 -14235891 - L2 LINE L2 -66 3247 3190 520 300 53 9 chr4 188092850 188093077 -14235270 - L1ME3A LINE L1 -30 6140 5904 21 57 0 0 chr4 188093592 188093627 -14234720 + AT_rich Low_complexity Low_complexity 1 35 0 1863 187 109 77 chr4 188093731 188094185 -14234162 + LTR28 LTR ERV1 31 506 -514 2474 66 0 0 chr4 188094185 188094487 -14233860 - AluY SINE Alu -9 302 1 1863 187 109 77 chr4 188094487 188094562 -14233785 + LTR28 LTR ERV1 506 577 -443 303 225 21 56 chr4 188094617 188094759 -14233588 + LTR27 LTR ERV1 500 636 0 1744 175 10 13 chr4 188095090 188095399 -14232948 + AluJb SINE Alu 1 308 -4 342 217 0 0 chr4 188095651 188095734 -14232613 + L1P LINE L1 1965 2047 -4099 201 238 0 0 chr4 188096012 188096054 -14232293 + (TG)n Simple_repeat Simple_repeat 1 42 0 2036 119 7 0 chr4 188096781 188097076 -14231271 + AluY SINE Alu 1 297 -14 21 0 0 0 chr4 188097276 188097297 -14231050 + AT_rich Low_complexity Low_complexity 1 21 0 489 328 116 30 chr4 188098304 188098870 -14229477 - L1MC4a LINE L1 -303 5818 5264 25 51 0 0 chr4 188098877 188098916 -14229431 + AT_rich Low_complexity Low_complexity 1 39 0 367 305 95 43 chr4 188099336 188099759 -14228588 - L1MC4a LINE L1 -1570 4576 4132 383 295 129 24 chr4 188099886 188100096 -14228251 + MIR SINE MIR 20 251 -11 33 43 0 0 chr4 188102029 188102076 -14226271 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr4 188102253 188102275 -14226072 + AT_rich Low_complexity Low_complexity 1 22 0 185 228 63 63 chr4 188102438 188102517 -14225830 - MIR SINE MIR -64 198 120 26723 29 1 0 chr4 188102776 188106824 -14221523 - L1PA2 LINE L1 0 6155 2143 1934 247 112 31 chr4 188107154 188107822 -14220525 + MER72 LTR ERV1 1 722 0 222 118 0 0 chr4 188108014 188108048 -14220299 + (A)n Simple_repeat Simple_repeat 1 34 0 1471 167 21 29 chr4 188108159 188108476 -14219871 + AluJb SINE Alu 3 317 0 1519 186 18 11 chr4 188108695 188108975 -14219372 + AluJo SINE Alu 1 282 -30 25 0 0 0 chr4 188108981 188109006 -14219341 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr4 188109211 188109240 -14219107 + AT_rich Low_complexity Low_complexity 1 29 0 1990 101 3 59 chr4 188110332 188110639 -14217708 - AluSg SINE Alu -15 295 6 1677 163 72 0 chr4 188110807 188111138 -14217209 + L1MA2 LINE L1 5902 6256 -48 483 299 8 0 chr4 188112663 188112797 -14215550 - MIR SINE MIR -24 238 104 22 0 0 0 chr4 188113481 188113503 -14214844 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr4 188113731 188113755 -14214592 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1913 135 0 4 chr4 188113768 188114042 -14214305 - AluSg SINE Alu -37 273 1 386 0 0 38 chr4 188114548 188114601 -14213746 - L1PA2 LINE L1 -5 6150 6100 22 80 0 0 chr4 188115042 188115092 -14213255 + AT_rich Low_complexity Low_complexity 1 50 0 2139 151 117 5 chr4 188117092 188117477 -14210870 + MSTA LTR MaLR 1 428 0 8417 191 18 10 chr4 188117477 188119114 -14209233 + MSTA-int LTR MaLR 1 1651 0 1918 157 138 5 chr4 188119116 188119492 -14208855 + MSTA LTR MaLR 3 428 0 1001 208 0 52 chr4 188119625 188119856 -14208491 - AluJo SINE Alu -8 304 86 25668 95 7 10 chr4 188119949 188126097 -14202250 + L1PA6 LINE L1 11 6143 -11 2307 81 0 0 chr4 188126116 188126411 -14201936 + AluY SINE Alu 1 295 -16 885 233 60 26 chr4 188126820 188127086 -14201261 + MLT1E-int LTR MaLR 329 603 -768 257 254 0 0 chr4 188127282 188127341 -14201006 + MLT1E-int LTR MaLR 692 750 -621 509 250 12 123 chr4 188127523 188127767 -14200580 + MLT1E-int LTR MaLR 982 1198 -173 274 321 46 15 chr4 188127866 188127997 -14200350 + MLT1E-int LTR MaLR 1237 1371 0 1171 248 113 46 chr4 188127997 188128550 -14199797 + MLT1E LTR MaLR 1 593 0 1217 274 52 19 chr4 188128551 188129382 -14198965 - L1MCa LINE L1 -3985 2411 1297 2295 236 118 79 chr4 188130091 188131140 -14197207 - MER52A LTR ERV1 0 1755 666 236 287 74 39 chr4 188131187 188131417 -14196930 - L1MCa LINE L1 -5170 1226 989 341 281 108 22 chr4 188131455 188131594 -14196753 - L1MCa LINE L1 -5340 878 728 394 243 18 18 chr4 188131602 188131713 -14196634 - L1MCa LINE L1 -5660 736 626 286 310 137 31 chr4 188131752 188131978 -14196369 - L1MCa LINE L1 -5851 545 296 875 306 8 4 chr4 188132430 188132685 -14195662 - L1MCa LINE L1 -6119 277 22 1831 153 35 38 chr4 188132981 188133348 -14194999 - MER47A DNA MER2_type 0 366 1 216 0 0 0 chr4 188135404 188135428 -14192919 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3618 169 84 6 chr4 188135569 188136268 -14192079 - LTR1B LTR ERV1 -72 754 1 403 232 0 0 chr4 188136287 188136369 -14191978 + MER77 LTR ERV1 523 604 -1 275 322 94 13 chr4 188136445 188136594 -14191753 - L2 LINE L2 0 3313 3153 2831 13 0 0 chr4 188137167 188137484 -14190863 + AluYb8 SINE Alu 1 317 -1 314 219 0 0 chr4 188137498 188137562 -14190785 + MLT1B LTR MaLR 327 390 0 329 208 0 28 chr4 188138274 188138346 -14190001 - MER70A LTR ERVL -2 470 401 361 316 37 11 chr4 188138492 188138761 -14189586 + L1ME LINE L1 1464 1739 -4868 1629 282 61 14 chr4 188138772 188139347 -14189000 - MER90 LTR ERV1 -2 612 11 342 252 58 56 chr4 188139375 188139586 -14188761 + L1ME LINE L1 1727 1889 -4537 232 259 47 0 chr4 188139710 188139795 -14188552 + L1MC4 LINE L1 6615 6703 -1339 368 131 0 0 chr4 188140008 188140069 -14188278 + L1MA8 LINE L1 6044 6104 -187 329 279 151 32 chr4 188140276 188140845 -14187502 + L1ME LINE L1 2548 3184 -3242 303 260 30 71 chr4 188141176 188141307 -14187040 + L1ME LINE L1 3539 3663 -2763 1871 144 3 0 chr4 188141307 188141591 -14186756 + AluSx SINE Alu 1 285 -27 303 260 30 71 chr4 188141591 188141628 -14186719 + L1ME LINE L1 3663 3700 -2726 359 204 35 152 chr4 188141782 188142012 -14186335 + L1ME LINE L1 4067 4269 -2157 2219 68 10 3 chr4 188142027 188142323 -14186024 - AluY SINE Alu -13 298 1 228 111 0 0 chr4 188142356 188142392 -14185955 + (A)n Simple_repeat Simple_repeat 1 36 0 1106 299 85 42 chr4 188142392 188142966 -14185381 + L1ME LINE L1 4292 4931 -1495 243 61 0 0 chr4 188142966 188142999 -14185348 + (TG)n Simple_repeat Simple_repeat 2 34 0 1106 299 85 42 chr4 188142999 188143443 -14184904 + L1ME LINE L1 4931 5354 -1072 196 150 40 50 chr4 188143464 188143564 -14184783 + A-rich Low_complexity Low_complexity 5 103 0 415 300 100 32 chr4 188143662 188144002 -14184345 + L1ME LINE L1 5534 5896 -554 459 214 128 0 chr4 188144221 188144338 -14184009 + FLAM_C SINE Alu 1 132 -1 262 388 9 9 chr4 188144444 188144560 -14183787 + MIR SINE MIR 2 117 -145 21 0 0 0 chr4 188144702 188144723 -14183624 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 188145073 188145094 -14183253 + AT_rich Low_complexity Low_complexity 1 21 0 430 298 60 60 chr4 188146221 188146469 -14181878 - MIR SINE MIR 0 262 15 3359 181 24 31 chr4 188146496 188146588 -14181759 - LTR51 LTR ERV1 -3 668 577 2130 112 0 0 chr4 188146588 188146891 -14181456 - L1PA11 LINE L1 0 6174 5872 3359 181 24 31 chr4 188146891 188147471 -14180876 - LTR51 LTR ERV1 -94 577 1 354 23 0 0 chr4 188147873 188147916 -14180431 + (CA)n Simple_repeat Simple_repeat 2 44 0 255 211 18 0 chr4 188148097 188148114 -14180233 + GA-rich Low_complexity Low_complexity 3 18 -42 2312 101 0 0 chr4 188148114 188148420 -14179927 + AluSc SINE Alu 1 306 -3 255 211 18 0 chr4 188148420 188148459 -14179888 + GA-rich Low_complexity Low_complexity 18 60 0 767 130 14 7 chr4 188148738 188148876 -14179471 - L1MB3 LINE L1 -1 6182 6044 26 0 0 0 chr4 188148998 188149024 -14179323 + AT_rich Low_complexity Low_complexity 1 26 0 279 250 99 80 chr4 188149728 188149940 -14178407 - MIR SINE MIR 0 262 47 21 112 0 0 chr4 188151006 188151104 -14177243 + AT_rich Low_complexity Low_complexity 1 98 0 21 0 0 0 chr4 188151896 188151917 -14176430 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 188152040 188152077 -14176270 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr4 188152694 188152721 -14175626 + AT_rich Low_complexity Low_complexity 1 27 0 1187 161 5 31 chr4 188153326 188153549 -14174798 + Tigger2a DNA MER2_type 1 217 -217 1744 183 95 20 chr4 188153943 188154343 -14174004 + MSTB1 LTR MaLR 3 432 0 195 203 0 0 chr4 188154514 188154573 -14173774 + (CA)n Simple_repeat Simple_repeat 1 59 0 21 0 0 0 chr4 188155418 188155439 -14172908 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 188155477 188155507 -14172840 + AT_rich Low_complexity Low_complexity 1 30 0 33 25 0 0 chr4 188155615 188155655 -14172692 + AT_rich Low_complexity Low_complexity 1 40 0 289 336 29 10 chr4 188155668 188155772 -14172575 - L2 LINE L2 -1 3312 3207 24 32 0 0 chr4 188156288 188156319 -14172028 + AT_rich Low_complexity Low_complexity 1 31 0 465 103 0 0 chr4 188156746 188156814 -14171533 + (TCCCC)n Simple_repeat Simple_repeat 4 71 0 947 157 6 0 chr4 188156814 188156973 -14171374 - AluSg/x SINE Alu -14 298 139 2417 75 0 3 chr4 188157191 188157498 -14170849 + AluY SINE Alu 1 306 -5 420 104 0 0 chr4 188157730 188157797 -14170550 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 6691 194 88 34 chr4 188157816 188159409 -14168938 + MER52A LTR ERV1 2 1755 0 1630 114 0 0 chr4 188160491 188160710 -14167637 + AluSg/x SINE Alu 83 301 -9 1652 245 135 37 chr4 188161008 188161819 -14166528 + L1MDa LINE L1 1085 1993 -4547 4022 62 18 4 chr4 188161819 188162363 -14165984 + L1PA8 LINE L1 5621 6172 0 1652 245 135 37 chr4 188162363 188162445 -14165902 + L1MDa LINE L1 1993 2066 -4474 10634 146 15 7 chr4 188162461 188164178 -14164169 - Tigger2 DNA MER2_type 0 2718 988 537 278 61 0 chr4 188164178 188164358 -14163989 + L1M4 LINE L1 4124 4314 -1832 213 39 0 0 chr4 188164428 188164454 -14163893 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1373 179 51 22 chr4 188164457 188164731 -14163616 - AluJo SINE Alu -30 282 1 26 50 0 0 chr4 188165324 188165364 -14162983 + AT_rich Low_complexity Low_complexity 1 40 0 1277 177 38 19 chr4 188166429 188166745 -14161602 - L1MA9 LINE L1 0 6312 5991 297 118 0 0 chr4 188167035 188167086 -14161261 + (CA)n Simple_repeat Simple_repeat 2 52 0 205 253 58 46 chr4 188167123 188167210 -14161137 + MIR SINE MIR 109 196 -66 3802 167 24 40 chr4 188167233 188168023 -14160324 + MER4E LTR ERV1 3 779 0 24 32 0 0 chr4 188168637 188168668 -14159679 + AT_rich Low_complexity Low_complexity 1 31 0 183 80 0 0 chr4 188169226 188169251 -14159096 + (CA)n Simple_repeat Simple_repeat 2 26 0 187 316 51 63 chr4 188169368 188169526 -14158821 + MIR SINE MIR 9 164 -98 2049 117 21 0 chr4 188169815 188170106 -14158241 - AluSq SINE Alu -16 297 1 343 380 119 16 chr4 188170211 188170658 -14157689 + L2 LINE L2 2311 2803 -511 227 208 21 0 chr4 188170816 188170864 -14157483 + CT-rich Low_complexity Low_complexity 2 50 0 202 368 44 18 chr4 188171004 188171118 -14157229 + L2 LINE L2 3156 3272 0 21 0 0 0 chr4 188172370 188172391 -14155956 + AT_rich Low_complexity Low_complexity 1 21 0 2233 91 7 0 chr4 188172391 188172676 -14155671 - AluSg SINE Alu -23 287 1 2164 109 10 0 chr4 188173096 188173389 -14154958 + AluSp SINE Alu 1 296 -17 467 348 14 45 chr4 188173829 188174119 -14154228 + LTR16A LTR ERVL 17 297 -153 246 288 206 33 chr4 188174238 188174422 -14153925 + LTR16A LTR ERVL 53 268 -182 592 176 0 0 chr4 188174764 188174866 -14153481 + AluYb8 SINE Alu 2 103 -215 517 139 0 0 chr4 188174867 188174946 -14153401 + AluY SINE Alu 22 100 -218 1468 111 4 40 chr4 188174967 188175193 -14153154 + AluSc SINE Alu 75 292 -17 352 337 88 50 chr4 188175674 188176092 -14152255 - L2 LINE L2 -577 2737 2304 238 311 126 7 chr4 188176119 188176270 -14152077 - L2 LINE L2 -5 3308 3140 28 29 0 0 chr4 188176510 188176545 -14151802 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 188176751 188176772 -14151575 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr4 188177591 188177620 -14150727 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 188178109 188178130 -14150217 + AT_rich Low_complexity Low_complexity 1 21 0 2055 166 0 3 chr4 188178293 188178631 -14149716 + MER1B DNA MER1_type 1 337 0 25 51 0 0 chr4 188178669 188178708 -14149639 + AT_rich Low_complexity Low_complexity 1 39 0 212 258 0 0 chr4 188179127 188179189 -14149158 + T-rich Low_complexity Low_complexity 4 65 0 437 301 42 21 chr4 188179375 188179611 -14148736 - L1ME LINE L1 -564 5598 5358 1427 224 29 53 chr4 188179732 188179896 -14148451 - L1MC3 LINE L1 -519 7266 7100 657 110 0 0 chr4 188179896 188180005 -14148342 + (TA)n Simple_repeat Simple_repeat 1 109 0 1427 224 29 53 chr4 188180005 188180251 -14148096 - L1MC3 LINE L1 -685 7100 6866 251 143 0 20 chr4 188180402 188180451 -14147896 - L1M4 LINE L1 -1547 4599 4552 424 243 66 40 chr4 188180665 188180817 -14147530 + L1M4b LINE L1 1 156 -6703 859 213 64 39 chr4 188180821 188181127 -14147220 - MER4C LTR ERV1 -7 692 276 1528 158 8 106 chr4 188181130 188181516 -14146831 - MER4A LTR ERV1 -316 348 1 3751 281 52 40 chr4 188181516 188182977 -14145370 + L1M4b LINE L1 150 1643 -5212 1712 183 3 0 chr4 188182977 188183262 -14145085 + AluJo SINE Alu 15 300 -12 3751 281 52 40 chr4 188183262 188183570 -14144777 + L1M4b LINE L1 1643 1946 -4909 2304 212 19 8 chr4 188183571 188184052 -14144295 - LTR29 LTR ERV1 0 622 137 322 292 0 0 chr4 188184057 188184153 -14144194 - MER34 LTR ERV1 -446 96 1 777 306 68 15 chr4 188184153 188184565 -14143782 + L1M4b LINE L1 1944 2526 -4612 2609 20 0 0 chr4 188184580 188184874 -14143473 + AluYb8 SINE Alu 23 316 -2 187 54 54 0 chr4 188184961 188184998 -14143349 + (TA)n Simple_repeat Simple_repeat 1 39 0 29 47 0 0 chr4 188185004 188185047 -14143300 + AT_rich Low_complexity Low_complexity 1 43 0 7847 245 45 46 chr4 188185165 188188377 -14139970 + L1M4b LINE L1 2617 5778 -1179 895 59 84 0 chr4 188188820 188188939 -14139408 + MER85 DNA T2_type 1 129 -10 1221 123 3 2 chr4 188189461 188189902 -14138445 + (CCA)n Simple_repeat Simple_repeat 1 622 0 235 308 0 0 chr4 188190002 188190067 -14138280 + (CCA)n Simple_repeat Simple_repeat 1 65 0 552 334 176 33 chr4 188190067 188190801 -14137546 + L1M2 LINE L1 659 1497 -5352 915 333 42 9 chr4 188191416 188191843 -14136504 - ERVL LTR ERVL -3427 2337 1897 34 42 0 0 chr4 188191966 188192014 -14136333 + AT_rich Low_complexity Low_complexity 1 48 0 25 0 0 0 chr4 188192427 188192452 -14135895 + AT_rich Low_complexity Low_complexity 1 25 0 2224 157 16 3 chr4 188192831 188193201 -14135146 + THE1C LTR MaLR 1 375 0 2001 118 11 4 chr4 188193374 188193681 -14134666 - AluSq SINE Alu 0 309 1 225 265 29 0 chr4 188193681 188193749 -14134598 - L1ME1 LINE L1 -32 6134 6065 373 127 17 6 chr4 188193749 188193823 -14134524 + AluS SINE Alu 1 59 -249 257 0 30 0 chr4 188193950 188193983 -14134364 + (CAA)n Simple_repeat Simple_repeat 3 36 0 1360 254 32 54 chr4 188193983 188194314 -14134033 - L1ME1 LINE L1 -108 6058 5740 2231 107 0 7 chr4 188194314 188194613 -14133734 - AluSg SINE Alu -13 297 1 1360 254 32 54 chr4 188194613 188194778 -14133569 - L1ME1 LINE L1 -426 5740 5573 1222 66 0 7 chr4 188194804 188194956 -14133391 - AluSq/x SINE Alu -162 151 1 955 214 53 22 chr4 188194981 188195323 -14133024 - L1ME1 LINE L1 -621 5545 5193 1614 131 120 11 chr4 188195979 188196246 -14132101 - AluSg1 SINE Alu -13 296 1 933 154 0 0 chr4 188196250 188196412 -14131935 + CT-rich Low_complexity Low_complexity 1 162 0 1453 158 135 8 chr4 188196412 188196678 -14131669 - AluSg1 SINE Alu -9 300 1 242 215 51 25 chr4 188197274 188197353 -14130994 + MLT1L LTR MaLR 509 589 -26 2056 104 3 57 chr4 188197513 188197829 -14130518 + AluSc SINE Alu 1 299 -10 25 31 0 0 chr4 188198033 188198065 -14130282 + AT_rich Low_complexity Low_complexity 1 32 0 1290 220 69 69 chr4 188198181 188198645 -14129702 + MLT1C LTR MaLR 1 464 -3 978 246 114 86 chr4 188198724 188199249 -14129098 + MLT1F LTR MaLR 3 542 0 2115 226 51 12 chr4 188199314 188199806 -14128541 - LTR53 LTR ERVL -8 511 1 1263 251 40 3 chr4 188199806 188200132 -14128215 - MER45B DNA AcHobo -1 1039 702 667 292 157 35 chr4 188200235 188200873 -14127474 - MER45C DNA AcHobo -181 772 1 26 0 0 0 chr4 188201267 188201293 -14127054 + AT_rich Low_complexity Low_complexity 1 26 0 216 186 0 0 chr4 188201293 188201352 -14126995 + T-rich Low_complexity Low_complexity 1 59 0 1286 208 0 16 chr4 188201352 188201597 -14126750 - AluJo SINE Alu -71 241 1 1673 165 48 7 chr4 188201958 188202249 -14126098 - AluJo SINE Alu -9 303 1 1231 236 83 9 chr4 188202368 188202716 -14125631 + MLT1A2 LTR MaLR 1 374 0 2088 307 72 37 chr4 188202722 188204235 -14124112 - L2 LINE L2 -7 3306 1732 976 241 30 0 chr4 188204249 188204481 -14123866 + MLT1D LTR MaLR 3 241 -264 1076 226 21 62 chr4 188204495 188204835 -14123512 + MLT1D LTR MaLR 180 505 0 2145 169 13 51 chr4 188205068 188205135 -14123212 - Tigger2a DNA MER2_type -2276 432 364 1939 156 20 0 chr4 188205135 188205436 -14122911 - AluSx SINE Alu -5 307 1 2145 169 13 51 chr4 188205436 188205817 -14122530 - Tigger2a DNA MER2_type -2344 364 1 344 315 188 19 chr4 188205876 188206301 -14122046 - L1ME3 LINE L1 -212 5950 5454 949 319 121 35 chr4 188206612 188207123 -14121224 - L2 LINE L2 -2759 555 1 24 32 0 0 chr4 188207647 188207678 -14120669 + AT_rich Low_complexity Low_complexity 1 31 0 2072 121 0 0 chr4 188207728 188208038 -14120309 + AluSx SINE Alu 5 314 0 437 265 197 7 chr4 188208926 188209073 -14119274 + MER5A DNA MER1_type 9 183 -6 201 121 0 0 chr4 188210266 188210299 -14118048 + (CAA)n Simple_repeat Simple_repeat 1 33 0 25 31 0 0 chr4 188211050 188211082 -14117265 + AT_rich Low_complexity Low_complexity 1 32 0 216 0 0 0 chr4 188211852 188211876 -14116471 + (TA)n Simple_repeat Simple_repeat 2 25 0 30 0 0 0 chr4 188212712 188212742 -14115605 + AT_rich Low_complexity Low_complexity 1 30 0 233 87 0 22 chr4 188213022 188213068 -14115279 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 330 349 91 18 chr4 188213618 188214024 -14114323 + L1ME3 LINE L1 4556 4995 -1151 2162 119 0 0 chr4 188214204 188214490 -14113857 + AluSx SINE Alu 1 286 -26 606 264 35 94 chr4 188214560 188214878 -14113469 - MLT1I LTR MaLR -18 391 93 358 285 71 45 chr4 188214961 188215227 -14113120 + L1ME3 LINE L1 5607 5877 -287 1509 124 0 0 chr4 188215766 188215983 -14112364 - AluSp SINE Alu -4 309 93 252 0 0 0 chr4 188216522 188216550 -14111797 + (TG)n Simple_repeat Simple_repeat 1 28 0 181 357 29 0 chr4 188217107 188217177 -14111170 - L2 LINE L2 -15 3257 3186 416 315 61 18 chr4 188217476 188217641 -14110706 + MIR SINE MIR 1 172 -90 417 302 45 45 chr4 188217700 188217922 -14110425 + MIR SINE MIR 15 236 -26 283 320 125 0 chr4 188217928 188218056 -14110291 - L2 LINE L2 -202 3111 2968 578 304 92 48 chr4 188218214 188218629 -14109718 - L2 LINE L2 -368 2946 2514 616 305 120 25 chr4 188218711 188219078 -14109269 + MLT1H LTR MaLR 148 549 0 708 296 38 58 chr4 188219322 188219721 -14108626 + L2 LINE L2 1270 1660 -1654 261 0 0 0 chr4 188222229 188222258 -14106089 + (TA)n Simple_repeat Simple_repeat 2 30 0 20809 45 9 1 chr4 188222258 188226127 -14102220 - L1PA5 LINE L1 -3 6151 2259 6413 51 0 0 chr4 188226127 188226924 -14101423 + L1PA5 LINE L1 1437 2233 -3913 502 327 25 35 chr4 188227703 188227905 -14100442 + MLT1I LTR MaLR 98 297 -112 24 32 0 0 chr4 188228462 188228493 -14099854 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 188228659 188228680 -14099667 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 188229397 188229419 -14098928 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 188230315 188230337 -14098010 + AT_rich Low_complexity Low_complexity 1 22 0 220 301 14 0 chr4 188231363 188231436 -14096911 + L2 LINE L2 3232 3305 -8 2088 118 7 0 chr4 188231560 188231848 -14096499 - AluSg SINE Alu -20 290 1 24 53 0 0 chr4 188231848 188231886 -14096461 + AT_rich Low_complexity Low_complexity 1 38 0 412 314 61 60 chr4 188232084 188232475 -14095872 + MLT1J2 LTR MaLR 39 401 -8 1507 184 43 7 chr4 188232903 188233181 -14095166 + AluJo SINE Alu 1 288 -24 1862 147 0 23 chr4 188233428 188233728 -14094619 + AluSx SINE Alu 1 293 -19 381 279 209 30 chr4 188233804 188234005 -14094342 - L1MDa LINE L1 -5641 899 663 1953 249 63 37 chr4 188234218 188234837 -14093510 - L1MDa LINE L1 -5887 653 19 25 31 0 0 chr4 188235603 188235635 -14092712 + AT_rich Low_complexity Low_complexity 1 32 0 2058 120 14 0 chr4 188235635 188235793 -14092554 - AluSq SINE Alu -24 289 124 405 0 0 0 chr4 188235793 188235838 -14092509 + (TG)n Simple_repeat Simple_repeat 2 46 0 2058 120 14 0 chr4 188235838 188235962 -14092385 - AluSq SINE Alu -189 124 3 292 239 30 54 chr4 188237156 188237323 -14091024 - L1MEd LINE L1 -4910 1209 1047 402 273 186 22 chr4 188239081 188239312 -14089035 - MLT1L LTR MaLR -147 468 200 461 291 50 39 chr4 188241810 188241992 -14086355 - MIR SINE MIR -13 249 66 323 231 11 27 chr4 188242169 188242364 -14085983 + GA-rich Low_complexity Low_complexity 1 191 0 39 60 0 0 chr4 188242866 188242933 -14085414 + AT_rich Low_complexity Low_complexity 1 67 0 27 29 0 0 chr4 188244199 188244233 -14084114 + AT_rich Low_complexity Low_complexity 1 34 0 333 289 78 28 chr4 188244403 188244545 -14083802 - LTR50 LTR ERVL -322 473 325 231 306 32 0 chr4 188244574 188244636 -14083711 - MIR SINE MIR -112 150 87 21 0 0 0 chr4 188245694 188245715 -14082632 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 188246671 188246696 -14081651 + AT_rich Low_complexity Low_complexity 1 25 0 240 35 0 0 chr4 188246922 188246951 -14081396 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1864 118 18 7 chr4 188246957 188247229 -14081118 - AluSx SINE Alu -37 275 1 233 313 16 0 chr4 188247622 188247686 -14080661 + L2 LINE L2 3248 3312 -1 225 203 51 0 chr4 188247883 188247962 -14080385 + (TA)n Simple_repeat Simple_repeat 2 84 0 1645 163 34 43 chr4 188249000 188249349 -14078998 + MER4A LTR ERV1 2 347 -317 952 101 0 43 chr4 188249684 188249872 -14078475 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 410 196 23 23 chr4 188249872 188250005 -14078342 + GA-rich Low_complexity Low_complexity 3 135 0 663 266 117 35 chr4 188250006 188250547 -14077800 + L1MEc LINE L1 1579 2163 -4233 623 223 44 48 chr4 188250557 188250763 -14077584 + L1M4 LINE L1 4656 4860 -1286 765 208 47 7 chr4 188250773 188250993 -14077354 - L1MD3 LINE L1 -1 7994 7557 * 1280 225 126 9 chr4 188250969 188251511 -14076836 - L1MD3 LINE L1 0 7787 6154 1593 193 64 77 chr4 188251511 188251613 -14076734 - MER74C LTR ERVL 0 460 358 1946 139 16 32 chr4 188251613 188251929 -14076418 + AluSx SINE Alu 1 311 -1 1593 193 64 77 chr4 188251929 188252292 -14076055 - MER74C LTR ERVL -102 358 1 864 236 98 58 chr4 188252334 188252661 -14075686 - MLT1C LTR MaLR -110 357 18 3398 109 12 16 chr4 188252670 188253185 -14075162 - MER75 DNA T2_type -1 513 1 772 277 86 3 chr4 188253200 188253525 -14074822 - L1M4 LINE L1 -3568 2578 2227 909 285 64 11 chr4 188253531 188253889 -14074458 + L1ME1 LINE L1 5665 6041 -125 1675 214 172 49 chr4 188253893 188254585 -14073762 + LTR1B LTR ERV1 1 777 -49 254 277 42 25 chr4 188254619 188254738 -14073609 + L1MC3 LINE L1 6049 6169 -1616 2275 102 7 0 chr4 188255100 188255403 -14072944 + AluSq SINE Alu 4 308 -5 2351 155 10 2 chr4 188255701 188256101 -14072246 + MER57A LTR ERV1 1 403 0 21 36 0 0 chr4 188256790 188256818 -14071529 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 188257979 188258008 -14070339 + AT_rich Low_complexity Low_complexity 1 29 0 210 229 57 21 chr4 188259131 188259271 -14069076 + (TA)n Simple_repeat Simple_repeat 1 145 0 183 42 0 0 chr4 188260422 188260446 -14067901 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 470 319 91 29 chr4 188260600 188260810 -14067537 + MIR SINE MIR 37 259 -3 24 0 0 0 chr4 188261232 188261256 -14067091 + AT_rich Low_complexity Low_complexity 1 24 0 35 41 0 0 chr4 188262247 188262296 -14066051 + AT_rich Low_complexity Low_complexity 1 49 0 1047 321 184 18 chr4 188263323 188263582 -14064765 - L2 LINE L2 -1344 1970 1755 1567 182 24 24 chr4 188263582 188263879 -14064468 - AluJo SINE Alu -15 297 1 1047 321 184 18 chr4 188263879 188264522 -14063825 - L2 LINE L2 -1559 1755 834 1630 230 37 7 chr4 188264675 188265083 -14063264 - MER119 DNA MER1_type -76 507 88 1810 326 74 14 chr4 188265110 188265871 -14062476 - L2 LINE L2 -2503 811 6 41 78 0 0 chr4 188266318 188266408 -14061939 + AT_rich Low_complexity Low_complexity 1 90 0 40727 64 6 3 chr4 188266431 188272174 -14056173 + L1PA5 LINE L1 11 5779 -375 2795 25 0 0 chr4 188272174 188272489 -14055858 + AluYb8 SINE Alu 1 315 -3 40727 64 6 3 chr4 188272489 188272860 -14055487 + L1PA5 LINE L1 5779 6147 -7 1830 104 74 24 chr4 188273505 188273802 -14054545 - AluSx SINE Alu 0 312 1 409 329 52 24 chr4 188276198 188276408 -14051939 + MIR SINE MIR 31 246 -16 206 229 0 0 chr4 188276429 188276477 -14051870 + (CAT)n Simple_repeat Simple_repeat 3 50 0 2283 208 98 33 chr4 188278452 188279115 -14049232 - L1MD2 LINE L1 -22 6731 6026 * 2446 238 95 35 chr4 188279108 188280181 -14048166 - L1MD2 LINE L1 -2792 3748 2740 2382 45 6 29 chr4 188280181 188280493 -14047854 - AluY SINE Alu -6 305 1 2446 238 95 35 chr4 188280493 188280530 -14047817 - L1MD2 LINE L1 -3800 2740 2707 2254 106 0 6 chr4 188280530 188280842 -14047505 - AluSx SINE Alu -2 310 1 2446 238 95 35 chr4 188280842 188281036 -14047311 - L1MD2 LINE L1 -3833 2707 2367 947 289 107 22 chr4 188281548 188281912 -14046435 + MLT1J LTR MaLR 16 428 -83 216 0 0 0 chr4 188281912 188281936 -14046411 + (TA)n Simple_repeat Simple_repeat 1 24 0 947 289 107 22 chr4 188281936 188282028 -14046319 + MLT1J LTR MaLR 428 511 0 2303 56 3 38 chr4 188282138 188282457 -14045890 - AluY SINE Alu -1 310 3 342 379 25 70 chr4 188282738 188283023 -14045324 + L2 LINE L2 3001 3272 0 2074 102 10 3 chr4 188283261 188283554 -14044793 + AluSg SINE Alu 1 295 -15 574 313 116 15 chr4 188283923 188284252 -14044095 - MLT1L LTR MaLR -86 529 168 1307 186 145 7 chr4 188284271 188284567 -14043780 - MER1B DNA MER1_type 0 337 1 181 313 151 31 chr4 188284673 188284865 -14043482 - L2 LINE L2 -1239 2075 1861 26 50 0 0 chr4 188286389 188286429 -14041918 + AT_rich Low_complexity Low_complexity 1 40 0 357 360 113 9 chr4 188286453 188286675 -14041672 - MIR SINE MIR 0 262 18 23 68 0 0 chr4 188287418 188287462 -14040885 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr4 188287691 188287716 -14040631 + AT_rich Low_complexity Low_complexity 1 25 0 2130 102 0 7 chr4 188289805 188290110 -14038237 + AluSc SINE Alu 1 303 0 190 265 0 0 chr4 188290128 188290177 -14038170 + L2 LINE L2 3265 3313 0 288 133 0 0 chr4 188290363 188290408 -14037939 - L2 LINE L2 -1 3312 3268 32 0 0 0 chr4 188291501 188291533 -14036814 + AT_rich Low_complexity Low_complexity 1 32 0 23 86 0 0 chr4 188291630 188291688 -14036659 + AT_rich Low_complexity Low_complexity 1 58 0 940 345 48 5 chr4 188291846 188292240 -14036107 - MLT1G1 LTR MaLR -169 426 16 21 0 0 0 chr4 188292312 188292333 -14036014 + AT_rich Low_complexity Low_complexity 1 21 0 1146 197 28 97 chr4 188292344 188292734 -14035613 + MLT1A1 LTR MaLR 3 365 0 329 344 88 40 chr4 188292754 188293027 -14035320 + HAL1 LINE L1 1347 1632 -875 330 67 0 0 chr4 188293368 188293413 -14034934 + (TG)n Simple_repeat Simple_repeat 2 46 0 934 350 101 42 chr4 188293417 188293764 -14034583 + L2 LINE L2 2260 2585 -728 2574 93 6 0 chr4 188293764 188294117 -14034230 + THE1A LTR MaLR 1 355 0 934 350 101 42 chr4 188294117 188294758 -14033589 + L2 LINE L2 2585 3311 -2 22 0 0 0 chr4 188294778 188294800 -14033547 + AT_rich Low_complexity Low_complexity 1 22 0 34 55 0 0 chr4 188295325 188295380 -14032967 + AT_rich Low_complexity Low_complexity 1 55 0 3378 256 77 30 chr4 188295984 188299624 -14028723 + L1MA7 LINE L1 1034 4692 -2414 * 3779 210 83 16 chr4 188299620 188301270 -14027077 + L1MA7 LINE L1 5425 7247 -4 467 332 66 18 chr4 188301713 188302153 -14026194 + L1ME3A LINE L1 5505 5965 -205 25 0 0 0 chr4 188302260 188302285 -14026062 + AT_rich Low_complexity Low_complexity 1 25 0 2191 97 3 3 chr4 188302902 188303201 -14025146 + AluSp SINE Alu 1 299 -14 883 250 29 0 chr4 188303957 188304161 -14024186 - MER58A DNA MER1_type -13 211 2 2992 207 24 12 chr4 188304643 188305310 -14023037 - L1MB5 LINE L1 -2 6172 5498 960 172 73 9 chr4 188305312 188305585 -14022762 + L1MB5 LINE L1 5210 5496 -678 1568 161 34 88 chr4 188308607 188308993 -14019354 - MLT1A1 LTR MaLR 0 365 1 554 352 75 32 chr4 188309129 188309566 -14018781 - MLT1K LTR MaLR -86 502 47 5571 139 56 5 chr4 188309775 188311078 -14017269 + L1PA13 LINE L1 4777 6162 -1 1785 225 48 0 chr4 188312422 188312862 -14015485 - L1MC3 LINE L1 -10 7775 7315 570 265 101 21 chr4 188312868 188313155 -14015192 + L1ME3A LINE L1 5383 5692 -478 743 94 0 0 chr4 188313158 188313264 -14015083 + AluSx SINE Alu 1 106 -206 34 84 0 0 chr4 188313275 188313358 -14014989 + AT_rich Low_complexity Low_complexity 1 83 0 1151 118 21 32 chr4 188313359 188313481 -14014866 + AluSx SINE Alu 109 230 -82 2311 114 30 25 chr4 188313481 188313877 -14014470 - MER48 LTR ERV1 0 398 1 1151 118 21 32 chr4 188313877 188313940 -14014407 + AluSx SINE Alu 230 292 -20 352 199 23 137 chr4 188314046 188314177 -14014170 - MER3 DNA MER1_type -83 126 11 907 278 41 23 chr4 188314179 188314524 -14013823 + L1ME3A LINE L1 5808 6158 -12 374 234 55 23 chr4 188316083 188316211 -14012136 + MIR SINE MIR 74 205 -57 2335 98 0 0 chr4 188317523 188317830 -14010517 + AluSc SINE Alu 1 307 -2 207 360 49 74 chr4 188318021 188318452 -14009895 + L2 LINE L2 2301 2720 -594 234 91 0 0 chr4 188318692 188318725 -14009622 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr4 188318968 188318989 -14009358 + AT_rich Low_complexity Low_complexity 1 21 0 280 185 0 25 chr4 188320201 188320282 -14008065 + (CATA)n Simple_repeat Simple_repeat 2 80 0 354 294 57 18 chr4 188320717 188320945 -14007402 - L1MC4 LINE L1 -410 7632 7396 3111 195 52 25 chr4 188320988 188321721 -14006626 - L1MB3 LINE L1 -8 6175 5423 858 231 19 5 chr4 188321766 188321982 -14006365 - L1MB3 LINE L1 -1271 4875 4657 * 2957 231 59 40 chr4 188321981 188322364 -14005983 - L1M4 LINE L1 -947 5199 4825 486 0 0 0 chr4 188322364 188322418 -14005929 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 2957 231 59 40 chr4 188322418 188323090 -14005257 - L1M4 LINE L1 -1321 4825 4124 * 3951 260 27 31 chr4 188323068 188323149 -14005198 - L1MD1 LINE L1 0 6242 6162 2200 64 4 0 chr4 188323149 188323455 -14004892 - AluY SINE Alu 0 308 2 3951 260 27 31 chr4 188323455 188324206 -14004141 - L1MD1 LINE L1 -80 6162 5409 1495 165 8 38 chr4 188324206 188324508 -14003839 - AluJb SINE Alu 0 318 25 3951 260 27 31 chr4 188324508 188326851 -14001496 - L1MD1 LINE L1 -833 5409 3067 1284 250 16 54 chr4 188326861 188327252 -14001095 + MLT1B LTR MaLR 11 388 -2 5073 235 124 63 chr4 188327257 188327658 -14000689 - L1MD1 LINE L1 -4141 2399 2024 2401 68 3 7 chr4 188327658 188327966 -14000381 - AluY SINE Alu -2 309 3 5073 235 124 63 chr4 188327966 188329819 -13998528 - L1MD1 LINE L1 -4516 2024 26 286 245 88 59 chr4 188330001 188330103 -13998244 - L3 LINE CR1 -866 711 607 188 170 19 0 chr4 188330207 188330260 -13998087 + A-rich Low_complexity Low_complexity 2 55 0 349 74 37 25 chr4 188330374 188330455 -13997892 + (TA)n Simple_repeat Simple_repeat 1 82 0 325 325 123 19 chr4 188330712 188330866 -13997481 - MIR SINE MIR -92 170 1 192 422 17 6 chr4 188331440 188331620 -13996727 - L2 LINE L2 -1314 2000 1819 722 286 86 14 chr4 188331933 188332309 -13996038 + MLT1F1 LTR MaLR 52 484 -83 791 258 25 43 chr4 188332573 188332895 -13995452 - L1MCc LINE L1 -4900 1523 1208 301 333 13 0 chr4 188333351 188333429 -13994918 + L1MCc LINE L1 370 448 -5975 1537 289 58 22 chr4 188333720 188334357 -13993990 + L1MCc LINE L1 874 1533 -4890 28 0 0 0 chr4 188335169 188335197 -13993150 + AT_rich Low_complexity Low_complexity 1 28 0 372 333 82 16 chr4 188335489 188335792 -13992555 + L1MC4a LINE L1 5602 5924 -1884 1920 147 43 25 chr4 188335974 188336342 -13992005 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr4 188336348 188336370 -13991977 + AT_rich Low_complexity Low_complexity 1 22 0 1252 140 44 107 chr4 188336840 188337112 -13991235 - AluJo SINE Alu -19 293 39 2614 171 63 14 chr4 188337254 188337821 -13990526 - LTR49 LTR ERV1 0 595 1 733 197 7 7 chr4 188337973 188338115 -13990232 - FRAM SINE Alu -13 163 22 25 0 0 0 chr4 188339006 188339031 -13989316 + AT_rich Low_complexity Low_complexity 1 25 0 467 245 141 25 chr4 188339164 188339327 -13989020 + MER101B LTR ERV1 1 182 -388 521 214 99 148 chr4 188340598 188341113 -13987234 + L1MC5 LINE L1 7211 7700 -261 237 388 6 44 chr4 188341803 188341963 -13986384 - L2 LINE L2 -323 2990 2837 241 153 17 17 chr4 188342401 188342460 -13985887 + CT-rich Low_complexity Low_complexity 2 60 0 522 368 39 13 chr4 188342466 188342700 -13985647 - L2 LINE L2 -975 2339 2100 283 344 8 16 chr4 188342979 188343107 -13985240 + L1MC/D LINE L1 296 422 -6141 378 363 12 6 chr4 188343119 188343279 -13985068 + L1MC/D LINE L1 1288 1448 -4936 460 319 36 5 chr4 188343384 188343796 -13984551 + L1MC/D LINE L1 1787 2234 -4329 229 115 19 19 chr4 188343798 188343850 -13984497 + CT-rich Low_complexity Low_complexity 1 52 0 504 230 64 39 chr4 188343890 188344295 -13984052 + L1MC/D LINE L1 2253 2769 -3613 1459 255 98 60 chr4 188344311 188344866 -13983481 + L1MC/D LINE L1 4358 4967 -1415 2286 101 0 0 chr4 188344866 188345163 -13983184 + AluSx SINE Alu 1 297 -15 1459 255 98 60 chr4 188345163 188345574 -13982773 + L1MC/D LINE L1 4967 5361 -1021 657 200 36 68 chr4 188345572 188345667 -13982680 + L1MC/D LINE L1 5591 5687 -908 * 1885 186 28 30 chr4 188345667 188346064 -13982283 + MSTD LTR MaLR 1 396 0 657 200 36 68 chr4 188346064 188346188 -13982159 + L1MC/D LINE L1 5687 5803 -792 422 132 99 11 chr4 188346189 188346280 -13982067 - MLT1E1 LTR MaLR -2 652 554 587 274 47 72 chr4 188346329 188346606 -13981741 - MER21B LTR ERV1 -186 677 408 219 139 0 0 chr4 188346608 188346644 -13981703 + (T)n Simple_repeat Simple_repeat 1 36 0 27 29 0 0 chr4 188346662 188346696 -13981651 + AT_rich Low_complexity Low_complexity 1 34 0 934 109 14 0 chr4 188346702 188346849 -13981498 - L1PA13 LINE L1 -1 6162 6014 512 220 89 132 chr4 188346868 188347196 -13981151 - MER21B LTR ERV1 -172 433 98 339 245 20 88 chr4 188347164 188347311 -13981036 - MER77 LTR ERV1 -403 202 66 * 1263 259 92 47 chr4 188347333 188347843 -13980504 - MLT1E1 LTR MaLR -116 538 6 780 179 104 29 chr4 188347849 188348022 -13980325 + L1MC/D LINE L1 5799 5984 -494 2200 156 49 12 chr4 188348320 188348731 -13979616 - MSTB LTR MaLR 0 426 1 207 259 0 19 chr4 188349189 188349243 -13979104 + GA-rich Low_complexity Low_complexity 3 55 0 841 279 92 28 chr4 188349472 188349930 -13978417 + HsTC2 DNA Tc2 1233 1895 -3 413 321 74 50 chr4 188349940 188350357 -13977990 - MER115 DNA AcHobo -3 690 184 1984 116 51 0 chr4 188354283 188354576 -13973771 - AluSx SINE Alu -4 308 1 24 0 0 0 chr4 188355113 188355137 -13973210 + AT_rich Low_complexity Low_complexity 1 24 0 22 99 0 0 chr4 188355396 188355467 -13972880 + AT_rich Low_complexity Low_complexity 1 71 0 247 186 43 29 chr4 188357158 188357228 -13971119 - L1MEc LINE L1 -5020 1376 1306 816 216 14 28 chr4 188357309 188357522 -13970825 - L1MC3 LINE L1 -633 7152 6943 2418 199 87 7 chr4 188357525 188358109 -13970238 + L1MC3 LINE L1 7155 7785 0 200 180 0 20 chr4 188358743 188358793 -13969554 + T-rich Low_complexity Low_complexity 2 50 0 40 87 0 0 chr4 188358857 188358960 -13969387 + AT_rich Low_complexity Low_complexity 1 103 0 604 254 142 28 chr4 188359706 188360144 -13968203 - MLT1E2 LTR MaLR -1 623 33 3094 146 50 53 chr4 188360144 188360217 -13968130 - MER41B LTR ERV1 0 635 563 2642 29 0 13 chr4 188360217 188360532 -13967815 + AluYa5 SINE Alu 1 311 0 3094 146 50 53 chr4 188360532 188361095 -13967252 - MER41B LTR ERV1 -72 563 1 604 254 142 28 chr4 188361095 188361122 -13967225 - MLT1E2 LTR MaLR -591 33 10 204 40 0 0 chr4 188361581 188361606 -13966741 + (T)n Simple_repeat Simple_repeat 1 25 0 264 316 102 70 chr4 188363013 188363456 -13964891 + HAL1 LINE L1 2 458 -2049 594 269 136 38 chr4 188363969 188364233 -13964114 + MLT1J LTR MaLR 209 498 -13 1318 301 61 46 chr4 188364399 188365315 -13963032 + HAL1 LINE L1 1578 2507 0 350 121 15 0 chr4 188365687 188365753 -13962594 - AluY SINE Alu 0 302 236 1289 88 6 22 chr4 188365753 188365934 -13962413 - AluY SINE Alu -133 178 1 184 143 0 41 chr4 188366175 188366224 -13962123 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 290 248 25 16 chr4 188367160 188367281 -13961066 + (TTATA)n Simple_repeat Simple_repeat 4 125 0 2861 89 89 0 chr4 188367363 188367779 -13960568 + MLT2A2 LTR ERVL 1 453 0 278 337 12 12 chr4 188368047 188368130 -13960217 - L2 LINE L2 -4 3268 3186 21 0 0 0 chr4 188368233 188368254 -13960093 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 188369236 188369264 -13959083 + AT_rich Low_complexity Low_complexity 1 28 0 413 192 192 13 chr4 188370331 188370487 -13957860 + MER5C DNA MER1_type 140 323 -1 2125 108 3 0 chr4 188371049 188371345 -13957002 - AluSp SINE Alu -16 297 1 419 262 49 33 chr4 188371489 188371611 -13956736 - L2 LINE L2 -6 3307 3184 203 224 0 30 chr4 188371918 188371985 -13956362 + (CATATA)n Simple_repeat Simple_repeat 4 68 0 632 281 32 0 chr4 188373500 188373685 -13954662 + MIR SINE MIR 48 238 -24 2039 112 0 35 chr4 188374486 188374798 -13953549 + AluSg SINE Alu 1 301 -9 2343 320 144 22 chr4 188374980 188377356 -13950991 + L2 LINE L2 19 3095 -218 23 0 0 0 chr4 188377517 188377540 -13950807 + AT_rich Low_complexity Low_complexity 1 23 0 1891 130 0 27 chr4 188378969 188379270 -13949077 + AluSq SINE Alu 1 293 -20 526 297 46 70 chr4 188379412 188379671 -13948676 + MLT1J LTR MaLR 99 351 -160 7042 186 37 7 chr4 188380413 188381891 -13946456 + L1M2 LINE L1 3863 5384 -762 455 178 6 38 chr4 188381894 188382051 -13946296 + (TA)n Simple_repeat Simple_repeat 1 152 0 233 121 0 52 chr4 188382063 188382121 -13946226 + (TA)n Simple_repeat Simple_repeat 1 55 0 324 216 34 0 chr4 188382122 188382210 -13946137 + L1M2 LINE L1 5362 5452 -848 2357 77 0 3 chr4 188382315 188382612 -13945735 + AluSp SINE Alu 1 296 -17 309 308 108 8 chr4 188382707 188382837 -13945510 + L1M4 LINE L1 2425 2567 -3579 487 300 12 38 chr4 188382913 188382936 -13945411 + L1ME LINE L1 5357 5379 -783 2154 111 13 0 chr4 188382936 188383234 -13945113 + AluSp SINE Alu 1 302 -11 487 300 12 38 chr4 188383234 188383423 -13944924 + L1ME LINE L1 5379 5564 -598 394 242 51 57 chr4 188384131 188384243 -13944104 + MIR SINE MIR 31 143 -119 2032 100 55 0 chr4 188384243 188384534 -13943813 + AluY SINE Alu 1 307 -4 394 242 51 57 chr4 188384534 188384578 -13943769 + MIR SINE MIR 143 186 -76 617 298 88 0 chr4 188384775 188384980 -13943367 + MIR SINE MIR 8 230 -32 560 223 20 47 chr4 188385612 188385760 -13942587 - MER58B DNA MER1_type 0 341 198 688 154 0 34 chr4 188385761 188385878 -13942469 + AluJb SINE Alu 3 115 -197 2178 102 44 0 chr4 188385978 188386320 -13942027 - HERVH LTR ERV1 -35 7678 7322 18701 94 39 6 chr4 188386335 188389129 -13939218 - HERVH LTR ERV1 -4828 2885 1 3474 47 5 7 chr4 188389131 188389580 -13938767 - LTR7 LTR ERV1 -2 448 1 1044 208 4 39 chr4 188389580 188389835 -13938512 - L1M3 LINE L1 -395 5788 5543 1137 140 42 19 chr4 188389950 188390164 -13938183 - L1MA8 LINE L1 -243 6048 5830 1035 123 12 0 chr4 188390164 188390325 -13938022 + L1MA8 LINE L1 6117 6288 -3 271 295 2 15 chr4 188390420 188390498 -13937849 + L2 LINE L2 3190 3308 -5 24 53 0 0 chr4 188390685 188390723 -13937624 + AT_rich Low_complexity Low_complexity 1 38 0 535 250 72 26 chr4 188390906 188391058 -13937289 - MIR SINE MIR -17 245 87 32 67 0 0 chr4 188391531 188391591 -13936756 + AT_rich Low_complexity Low_complexity 1 60 0 1825 150 0 49 chr4 188392640 188392966 -13935381 - AluSg SINE Alu 0 310 1 291 28 0 0 chr4 188393604 188393640 -13934707 + (TG)n Simple_repeat Simple_repeat 2 37 0 1973 136 0 31 chr4 188394077 188394394 -13933953 + AluSx SINE Alu 2 308 -4 243 308 28 56 chr4 188394395 188394538 -13933809 + MER5A DNA MER1_type 1 139 -50 617 263 148 14 chr4 188394768 188394977 -13933370 - MIR SINE MIR -20 242 6 445 354 33 5 chr4 188395722 188395934 -13932413 + MIR SINE MIR 39 256 -6 516 151 0 12 chr4 188396730 188396816 -13931531 - Tigger4(Zombi) DNA MER2_type 0 2731 2647 2081 204 62 0 chr4 188396829 188397230 -13931117 - Tigger4(Zombi) DNA MER2_type -2303 428 3 217 222 12 25 chr4 188397852 188397933 -13930414 + T-rich Low_complexity Low_complexity 4 83 0 319 228 26 26 chr4 188398014 188398128 -13930219 - MER104 DNA Tc2 -44 136 23 22 56 0 0 chr4 188398342 188398378 -13929969 + AT_rich Low_complexity Low_complexity 1 36 0 397 313 42 42 chr4 188398994 188399253 -13929094 - L2 LINE L2 -60 3253 2995 459 0 0 0 chr4 188399257 188399308 -13929039 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 234 172 23 46 chr4 188399314 188399401 -13928946 + (TATAA)n Simple_repeat Simple_repeat 1 85 0 326 352 60 14 chr4 188399417 188399701 -13928646 - L2 LINE L2 -340 2974 2678 25 118 0 0 chr4 188400101 188400245 -13928102 + AT_rich Low_complexity Low_complexity 1 144 0 47 53 0 0 chr4 188400509 188400584 -13927763 + AT_rich Low_complexity Low_complexity 1 75 0 2185 106 3 0 chr4 188400627 188400930 -13927417 - AluSg SINE Alu -6 304 1 791 254 109 50 chr4 188400951 188401310 -13927037 + L2 LINE L2 2934 3313 0 4234 210 58 47 chr4 188402438 188403718 -13924629 + L1M4 LINE L1 4105 5403 -781 255 31 0 0 chr4 188403718 188403750 -13924597 + (CA)n Simple_repeat Simple_repeat 2 33 0 4234 210 58 47 chr4 188403750 188404011 -13924336 + L1M4 LINE L1 5403 5660 -524 1411 271 45 32 chr4 188404007 188404227 -13924120 - L1M LINE L1 -745 5401 5185 * 2528 36 0 3 chr4 188404227 188404532 -13923815 - AluY SINE Alu -7 304 1 1411 271 45 32 chr4 188404532 188405061 -13923286 - L1M LINE L1 -961 5185 4664 2510 275 63 20 chr4 188405066 188407438 -13920909 - L1MCa LINE L1 -1549 4877 2333 1966 109 46 0 chr4 188407438 188407721 -13920626 - AluSp SINE Alu -12 301 6 2510 275 63 20 chr4 188407721 188407813 -13920534 - L1MCa LINE L1 -4093 2333 2246 210 346 17 0 chr4 188407993 188408086 -13920261 - MIR SINE MIR -64 144 49 241 329 12 0 chr4 188408234 188408316 -13920031 + MIR SINE MIR 1 83 -179 453 301 86 21 chr4 188408327 188408513 -13919834 + MIR SINE MIR 53 250 -12 1732 181 39 13 chr4 188408911 188409262 -13919085 - L1MB3 LINE L1 -3 6180 5817 5248 77 18 32 chr4 188409262 188410039 -13918308 + MER4E LTR ERV1 1 766 0 1732 181 39 13 chr4 188410039 188410073 -13918274 - L1MB3 LINE L1 -366 5817 5785 1695 80 0 8 chr4 188410076 188410315 -13918032 - LTR7 LTR ERV1 -2 448 212 3086 239 24 10 chr4 188410415 188411815 -13916532 + L1MB8 LINE L1 4403 5825 -349 252 299 0 0 chr4 188411815 188411882 -13916465 + FLAM_A SINE Alu 40 106 -27 1486 191 42 39 chr4 188411882 188412141 -13916206 + L1MB8 LINE L1 5822 6084 -94 1920 197 11 3 chr4 188412141 188412501 -13915846 - MER47A DNA MER2_type -3 363 1 1486 191 42 39 chr4 188412501 188412597 -13915750 + L1MB8 LINE L1 6084 6178 0 222 37 0 0 chr4 188413094 188413121 -13915226 + (CA)n Simple_repeat Simple_repeat 2 28 0 24 77 0 0 chr4 188413478 188413530 -13914817 + AT_rich Low_complexity Low_complexity 1 52 0 1685 215 37 6 chr4 188413585 188413939 -13914408 - MLT1A1 LTR MaLR 0 365 1 409 310 62 0 chr4 188413989 188414134 -13914213 - MIR SINE MIR -72 190 37 1202 109 0 22 chr4 188414623 188414807 -13913540 + AluY SINE Alu 132 311 0 2695 88 118 0 chr4 188414815 188415215 -13913132 - MER41A LTR ERV1 -107 447 1 1436 198 35 24 chr4 188415216 188415271 -13913076 - L1MB3 LINE L1 -640 5543 5490 1744 156 0 0 chr4 188415271 188415554 -13912793 - AluSx SINE Alu 0 312 30 1436 198 35 24 chr4 188415554 188415950 -13912397 - L1MB3 LINE L1 -693 5490 5088 261 0 0 0 chr4 188415950 188415979 -13912368 + (A)n Simple_repeat Simple_repeat 1 29 0 261 0 0 0 chr4 188416832 188416861 -13911486 + (A)n Simple_repeat Simple_repeat 1 29 0 7409 254 55 25 chr4 188416861 188418652 -13909695 - L1MB3 LINE L1 -1053 5093 3194 189 0 0 0 chr4 188418652 188418673 -13909674 + (TTAA)n Simple_repeat Simple_repeat 3 23 0 7409 254 55 25 chr4 188418673 188419584 -13908763 - L1MB3 LINE L1 -2952 3194 2311 514 200 0 0 chr4 188419599 188419694 -13908653 - AluSg/x SINE Alu -85 227 133 484 157 48 36 chr4 188419697 188419805 -13908542 - L1MCb LINE L1 -3885 2681 2576 1902 138 0 18 chr4 188419805 188420081 -13908266 - AluSx SINE Alu -37 275 5 484 157 48 36 chr4 188420081 188420409 -13907938 - L1MCb LINE L1 -3990 2576 2253 1763 163 7 10 chr4 188420409 188420709 -13907638 - AluSx SINE Alu -9 303 5 484 157 48 36 chr4 188420709 188420988 -13907359 - L1MCb LINE L1 -4313 2253 1812 * 8779 218 66 14 chr4 188420984 188425097 -13903250 - L1MA4 LINE L1 -5 7714 3303 3186 251 45 19 chr4 188425119 188426546 -13901801 - L1MCb LINE L1 -4851 1194 128 29 28 0 0 chr4 188426995 188427031 -13901316 + AT_rich Low_complexity Low_complexity 1 36 0 1216 122 0 0 chr4 188428311 188428483 -13899864 + AluSq SINE Alu 123 294 -19 372 88 0 0 chr4 188428522 188428579 -13899768 + (CA)n Simple_repeat Simple_repeat 2 58 0 35 41 0 0 chr4 188428626 188428675 -13899672 + AT_rich Low_complexity Low_complexity 1 49 0 426 328 64 60 chr4 188429053 188429489 -13898858 - L1ME4a LINE L1 -226 5895 5458 1994 141 0 0 chr4 188430055 188430384 -13897963 + AluSq SINE Alu 1 329 0 1620 215 0 0 chr4 188431053 188431355 -13896992 + AluJb SINE Alu 7 308 -4 24 53 0 0 chr4 188431356 188431394 -13896953 + AT_rich Low_complexity Low_complexity 1 38 0 29 98 0 0 chr4 188431635 188431727 -13896620 + AT_rich Low_complexity Low_complexity 1 92 0 1861 88 4 0 chr4 188432041 188432280 -13896067 + AluSp SINE Alu 44 283 -30 206 0 69 0 chr4 188432283 188432312 -13896035 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 22 56 0 0 chr4 188432879 188432915 -13895432 + AT_rich Low_complexity Low_complexity 1 36 0 1596 199 0 3 chr4 188432916 188433208 -13895139 - AluJo SINE Alu -19 293 3 1554 34 0 0 chr4 188433293 188433472 -13894875 - AluYb8 SINE Alu -8 310 132 409 310 62 0 chr4 188433961 188434106 -13894241 + MIR SINE MIR 37 190 -72 1685 215 37 6 chr4 188434156 188434510 -13893837 + MLT1A1 LTR MaLR 1 365 0 24 77 0 0 chr4 188434565 188434617 -13893730 + AT_rich Low_complexity Low_complexity 1 52 0 222 37 0 0 chr4 188434974 188435001 -13893346 + (TG)n Simple_repeat Simple_repeat 2 28 0 1486 191 42 39 chr4 188435498 188435594 -13892753 - L1MB8 LINE L1 0 6178 6084 1920 197 11 3 chr4 188435594 188435954 -13892393 + MER47A DNA MER2_type 1 363 -3 1486 191 42 39 chr4 188435954 188436213 -13892134 - L1MB8 LINE L1 -94 6084 5822 252 299 0 0 chr4 188436213 188436280 -13892067 - FLAM_A SINE Alu -27 106 40 5309 234 27 29 chr4 188436280 188438326 -13890021 - L1MB8 LINE L1 -349 5825 3775 2734 22 0 0 chr4 188438326 188438637 -13889710 - AluY SINE Alu 0 311 1 2051 145 3 0 chr4 188438639 188438936 -13889411 - AluSx SINE Alu -14 298 1 5309 234 27 29 chr4 188438936 188439039 -13889308 - L1MB8 LINE L1 -2400 3774 3679 198 0 0 0 chr4 188439156 188439178 -13889169 + (A)n Simple_repeat Simple_repeat 1 22 0 27 29 0 0 chr4 188439432 188439466 -13888881 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr4 188439519 188439550 -13888797 + AT_rich Low_complexity Low_complexity 1 31 0 1317 222 25 104 chr4 188439668 188440075 -13888272 - L1M4 LINE L1 -1988 4158 3721 2734 22 0 0 chr4 188440075 188440386 -13887961 - AluY SINE Alu 0 311 1 2051 145 3 0 chr4 188440388 188440685 -13887662 - AluSx SINE Alu -14 298 1 1317 222 25 104 chr4 188440685 188440783 -13887564 - L1M4 LINE L1 -2426 3720 3690 198 0 0 0 chr4 188440905 188440927 -13887420 + (A)n Simple_repeat Simple_repeat 1 22 0 27 29 0 0 chr4 188441180 188441214 -13887133 + AT_rich Low_complexity Low_complexity 1 34 0 286 311 55 44 chr4 188441443 188441877 -13886470 + L1 LINE L1 2921 3359 -2787 195 20 0 137 chr4 188442284 188442335 -13886012 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 24 53 0 0 chr4 188442335 188442373 -13885974 + AT_rich Low_complexity Low_complexity 1 38 0 301 306 18 0 chr4 188442373 188442484 -13885863 + L1 LINE L1 3511 3623 -2523 309 294 186 26 chr4 188442541 188442772 -13885575 + L1 LINE L1 3699 3966 -2180 247 374 77 20 chr4 188443873 188444119 -13884228 - MIR SINE MIR 0 262 3 236 385 28 22 chr4 188445066 188445245 -13883102 + L2 LINE L2 263 442 -2872 30 0 0 0 chr4 188445865 188445895 -13882452 + AT_rich Low_complexity Low_complexity 1 30 0 1635 150 22 47 chr4 188446124 188446444 -13881903 + AluSx SINE Alu 1 312 0 273 250 15 0 chr4 188447258 188447326 -13881021 - MLT1I LTR MaLR -273 136 68 665 214 43 7 chr4 188447432 188447572 -13880775 - Tigger7 DNA MER2_type -2 2585 2441 463 228 22 0 chr4 188447574 188447666 -13880681 - Tigger7 DNA MER2_type -212 338 245 1096 162 0 0 chr4 188447666 188447839 -13880508 + FRAM SINE Alu 1 168 -8 1028 234 60 0 chr4 188447839 188448074 -13880273 - Tigger7 DNA MER2_type -482 251 3 325 294 10 71 chr4 188448077 188448274 -13880073 - MER46C DNA MER2_type -149 189 5 352 326 38 16 chr4 188448339 188448523 -13879824 - L1MEc LINE L1 -4023 2540 2353 285 284 58 37 chr4 188448531 188448859 -13879488 - L1MEc LINE L1 -4919 1553 1269 212 340 50 10 chr4 188449331 188449431 -13878916 + MIR SINE MIR 157 260 -2 209 309 101 30 chr4 188449622 188449790 -13878557 + MIR SINE MIR 71 250 -12 249 33 0 0 chr4 188450998 188451028 -13877319 + (TG)n Simple_repeat Simple_repeat 2 31 0 306 0 0 0 chr4 188451326 188451360 -13876987 + (CA)n Simple_repeat Simple_repeat 1 34 0 269 125 38 12 chr4 188453471 188453551 -13874796 + (TA)n Simple_repeat Simple_repeat 2 83 0 3862 168 3 1 chr4 188453703 188454364 -13873983 - L1PA15 LINE L1 -3 6162 5501 660 208 46 46 chr4 188457106 188457303 -13871044 - L1MC3 LINE L1 -13 7772 7576 403 129 0 0 chr4 188457303 188457365 -13870982 + AluS SINE Alu 1 62 -241 478 143 0 20 chr4 188457367 188457510 -13870837 - L1 LINE L1 -1780 5785 5563 * 1978 206 35 5 chr4 188457496 188457865 -13870482 - L1 LINE L1 -5765 1800 1421 3414 207 32 39 chr4 188457876 188458740 -13869607 - L1MC3 LINE L1 -422 7363 6506 649 329 81 44 chr4 188459126 188459743 -13868604 + HERVL LTR ERVL 1896 2535 -3119 186 43 0 0 chr4 188459748 188459771 -13868576 + (GA)n Simple_repeat Simple_repeat 2 24 0 1173 229 36 49 chr4 188460467 188460772 -13867575 - MLT1A2 LTR MaLR 0 374 74 366 159 32 0 chr4 188460936 188460999 -13867348 - MLT1A2 LTR MaLR -309 65 1 380 340 80 36 chr4 188461131 188461618 -13866729 + HERVL LTR ERVL 3414 3949 -1705 619 379 38 15 chr4 188461695 188462167 -13866180 + HERVL LTR ERVL 4038 4520 -965 667 363 43 13 chr4 188462302 188462770 -13865577 + HERVL LTR ERVL 4626 5107 -657 1089 214 82 53 chr4 188462794 188463173 -13865174 + MLT1B LTR MaLR 1 390 0 1877 123 9 41 chr4 188463305 188463623 -13864724 + AluSc SINE Alu 1 308 -1 31 0 0 0 chr4 188463623 188463654 -13864693 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr4 188464712 188464733 -13863614 + AT_rich Low_complexity Low_complexity 1 21 0 284 333 42 25 chr4 188465485 188465605 -13862742 - MIR SINE MIR -71 137 16 193 360 48 27 chr4 188465613 188465760 -13862587 + MIR SINE MIR 15 164 -98 1897 127 173 14 chr4 188465888 188466257 -13862090 - MSTA LTR MaLR 0 428 1 231 378 39 16 chr4 188466293 188466420 -13861927 - L2 LINE L2 -5 3308 3179 510 298 121 27 chr4 188466494 188466804 -13861543 + LTR16A LTR ERVL 95 459 -5 430 286 176 0 chr4 188466809 188466991 -13861356 + HERV16 LTR ERVL 1 214 -4782 311 387 42 28 chr4 188467513 188467730 -13860617 + HERV16 LTR ERVL 1380 1599 -4165 1327 210 133 3 chr4 188467872 188468234 -13860113 - MLT1C LTR MaLR 0 467 59 1617 299 61 24 chr4 188468281 188468789 -13859558 + HERV16 LTR ERVL 1709 2318 -2806 1015 261 73 39 chr4 188468789 188469172 -13859175 + MSTD LTR MaLR 1 396 0 1617 299 61 24 chr4 188469172 188469422 -13858925 + HERV16 LTR ERVL 2318 2557 -2567 324 0 0 0 chr4 188469443 188469479 -13858868 + (TG)n Simple_repeat Simple_repeat 1 36 0 535 362 27 0 chr4 188469550 188469771 -13858576 + HERV16 LTR ERVL 2632 2858 -2138 1726 197 55 17 chr4 188469774 188470088 -13858259 + MER67B LTR ERV1 287 618 -43 2010 137 7 0 chr4 188470088 188470394 -13857953 - AluSx SINE Alu -2 310 3 1726 197 55 17 chr4 188470394 188470440 -13857907 + MER67B LTR ERV1 618 661 0 1049 364 61 28 chr4 188470440 188471841 -13856506 + HERV16 LTR ERVL 3427 4869 -616 813 317 62 15 chr4 188472432 188472770 -13855577 + LTR16A LTR ERVL 97 450 0 244 344 140 60 chr4 188472835 188472990 -13855357 + L2 LINE L2 1828 1969 -1303 2128 108 0 10 chr4 188472990 188473285 -13855062 - AluSx SINE Alu -16 296 5 244 344 140 60 chr4 188473285 188474267 -13854080 + L2 LINE L2 1969 3054 -218 405 0 0 0 chr4 188475378 188475423 -13852924 + (GA)n Simple_repeat Simple_repeat 1 45 0 261 0 0 0 chr4 188475422 188475451 -13852896 + (TG)n Simple_repeat Simple_repeat 1 29 0 * 2295 53 0 11 chr4 188476092 188476419 -13851928 + AluY SINE Alu 1 324 0 207 0 0 0 chr4 188476558 188476581 -13851766 + (TG)n Simple_repeat Simple_repeat 2 24 0 386 333 51 42 chr4 188477083 188477320 -13851027 - MIR SINE MIR -6 256 18 25 0 0 0 chr4 188478273 188478298 -13850049 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr4 188478352 188478383 -13849964 + AT_rich Low_complexity Low_complexity 1 31 0 189 94 0 0 chr4 188478933 188478965 -13849382 + (A)n Simple_repeat Simple_repeat 1 32 0 235 175 95 48 chr4 188479803 188479866 -13848481 + MLT1E2 LTR MaLR 1 66 -560 21 57 0 0 chr4 188480784 188480819 -13847528 + AT_rich Low_complexity Low_complexity 1 35 0 573 300 12 54 chr4 188481554 188481794 -13846553 + MIR SINE MIR 33 262 0 241 321 9 19 chr4 188482004 188482110 -13846237 - MER5B DNA MER1_type -69 109 5 21 57 0 0 chr4 188483314 188483349 -13844998 + AT_rich Low_complexity Low_complexity 1 35 0 579 255 20 7 chr4 188483544 188483693 -13844654 + FRAM SINE Alu 1 151 -15 2442 178 55 36 chr4 188484002 188484443 -13843904 + MLT2B2 LTR ERVL 1 432 -83 1198 245 77 12 chr4 188484443 188484766 -13843581 - MER2 DNA MER2_type 0 344 1 3321 103 32 74 chr4 188484775 188485399 -13842948 - MER4A LTR ERV1 0 600 3 2442 178 55 36 chr4 188485399 188485452 -13842895 + MLT2B2 LTR ERVL 439 515 0 314 296 6 34 chr4 188485658 188485837 -13842510 + GA-rich Low_complexity Low_complexity 2 175 0 2238 136 22 14 chr4 188486625 188486986 -13841361 + THE1B LTR MaLR 1 364 0 775 310 66 0 chr4 188487124 188487350 -13840997 + MLT1H1 LTR MaLR 5 245 -310 587 298 54 61 chr4 188487401 188487680 -13840667 + MLT1H1 LTR MaLR 248 524 -31 416 296 68 0 chr4 188488553 188488685 -13839662 - MIR SINE MIR -50 212 72 1572 185 15 77 chr4 188489615 188489664 -13838683 - MLT1A1 LTR MaLR 0 365 315 1836 161 7 7 chr4 188489664 188489968 -13838379 - AluSx SINE Alu -8 304 1 1572 185 15 77 chr4 188489968 188490171 -13838176 - MLT1A1 LTR MaLR -50 315 143 2736 16 3 3 chr4 188490171 188490486 -13837861 - AluYb8 SINE Alu -3 315 1 1572 185 15 77 chr4 188490486 188490621 -13837726 - MLT1A1 LTR MaLR -222 143 1 204 311 29 29 chr4 188491804 188491907 -13836440 - MIR SINE MIR -122 140 38 471 48 0 0 chr4 188493669 188493731 -13834616 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 640 280 13 36 chr4 188495642 188495867 -13832480 - L2 LINE L2 0 3313 3094 24 0 0 0 chr4 188496181 188496205 -13832142 + AT_rich Low_complexity Low_complexity 1 24 0 315 132 0 0 chr4 188497707 188497775 -13830572 + (TA)n Simple_repeat Simple_repeat 2 69 0 25 31 0 0 chr4 188497809 188497841 -13830506 + AT_rich Low_complexity Low_complexity 1 32 0 297 51 0 0 chr4 188498531 188498570 -13829777 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr4 188499785 188499806 -13828541 + AT_rich Low_complexity Low_complexity 1 21 0 1966 138 0 41 chr4 188500461 188500781 -13827566 - AluSx SINE Alu -4 308 2 25 0 0 0 chr4 188501125 188501150 -13827197 + AT_rich Low_complexity Low_complexity 1 25 0 404 67 17 0 chr4 188501690 188501774 -13826573 + (CA)n Simple_repeat Simple_repeat 1 146 0 404 67 17 0 chr4 188501774 188501834 -13826513 + (CA)n Simple_repeat Simple_repeat 2 62 0 212 358 42 36 chr4 188502674 188502839 -13825508 - MIR3 SINE MIR -29 179 14 28 0 0 0 chr4 188502993 188503021 -13825326 + AT_rich Low_complexity Low_complexity 1 28 0 2537 194 24 27 chr4 188503104 188503758 -13824589 - LTR27 LTR ERV1 -130 506 3 9046 183 55 23 chr4 188503759 188506577 -13821770 - LTR27-int LTR ERV1 0 6205 1237 2278 97 38 191 chr4 188506577 188507111 -13821236 + MLT2A2 LTR ERVL 2 453 0 8351 118 36 5 chr4 188507111 188508358 -13819989 + HERVL-A2 LTR ERVL 1 1286 -4368 1866 234 54 12 chr4 188508372 188508872 -13819475 - LTR27 LTR ERV1 -141 495 7 483 220 22 0 chr4 188508873 188508964 -13819383 - FRAM SINE Alu -84 92 1 475 269 33 16 chr4 188509108 188509290 -13819057 + L1M4 LINE L1 3473 3657 -2489 1002 287 17 7 chr4 188509305 188509719 -13818628 + L1M4 LINE L1 4856 5273 -873 4395 227 60 11 chr4 188509724 188511149 -13817198 + L1 LINE L1 2524 4042 -2104 449 241 21 7 chr4 188511179 188511320 -13817027 + L1MA10 LINE L1 6191 6333 -1 374 255 199 69 chr4 188511631 188511787 -13816560 + MIR SINE MIR 5 198 -64 1913 134 33 0 chr4 188511787 188512122 -13816225 + L1MA4A LINE L1 5955 6300 -3 374 255 199 69 chr4 188512122 188512181 -13816166 + MIR SINE MIR 198 248 -14 28 29 0 0 chr4 188512539 188512574 -13815773 + AT_rich Low_complexity Low_complexity 1 35 0 549 301 29 29 chr4 188512679 188512888 -13815459 - MIR SINE MIR -2 260 52 1800 129 27 37 chr4 188513305 188513599 -13814748 - AluSx SINE Alu -15 297 7 330 294 109 0 chr4 188514147 188514239 -13814108 + MER119 DNA MER1_type 1 102 -481 452 214 103 0 chr4 188514262 188514379 -13813968 + MER119 DNA MER1_type 455 583 0 2275 179 16 12 chr4 188515702 188516126 -13812221 - MSTB LTR MaLR 0 426 1 1721 209 0 3 chr4 188516844 188517155 -13811192 - AluJb SINE Alu -2 310 1 287 345 8 8 chr4 188517586 188517705 -13810642 + CT-rich Low_complexity Low_complexity 2 120 0 766 217 48 10 chr4 188518176 188518395 -13809952 - MER61D LTR ERV1 0 750 338 21 0 0 0 chr4 188520500 188520521 -13807826 + AT_rich Low_complexity Low_complexity 1 21 0 219 69 0 0 chr4 188521351 188521380 -13806967 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 346 321 73 79 chr4 188521523 188522056 -13806291 - L2 LINE L2 -233 3080 2554 285 29 0 0 chr4 188522264 188522298 -13806049 + (TA)n Simple_repeat Simple_repeat 2 35 0 187 278 83 65 chr4 188522472 188522580 -13805767 - MIR3 SINE MIR -5 203 94 737 199 84 84 chr4 188522785 188523082 -13805265 - LTR16C LTR ERVL -17 474 178 48 32 0 0 chr4 188523207 188523269 -13805078 + AT_rich Low_complexity Low_complexity 1 62 0 21 36 0 0 chr4 188524069 188524097 -13804250 + AT_rich Low_complexity Low_complexity 1 28 0 591 268 145 0 chr4 188524748 188524927 -13803420 + MER58A DNA MER1_type 4 208 -16 255 316 101 42 chr4 188524997 188525165 -13803182 - MLT1H1 LTR MaLR -51 504 327 516 282 52 47 chr4 188525237 188525402 -13802945 - MLT1H1 LTR MaLR -279 276 150 1901 62 0 12 chr4 188525402 188525642 -13802705 - AluSp SINE Alu -1 312 76 516 282 52 47 chr4 188525642 188525791 -13802556 - MLT1H1 LTR MaLR -405 150 3 217 230 54 40 chr4 188525836 188525910 -13802437 - MER5C DNA MER1_type -249 75 1 25 75 0 0 chr4 188526670 188526723 -13801624 + AT_rich Low_complexity Low_complexity 1 53 0 2635 45 0 0 chr4 188527049 188527360 -13800987 + AluY SINE Alu 1 311 0 1437 211 79 61 chr4 188528151 188528645 -13799702 + MLT1D LTR MaLR 1 503 -2 23 0 0 0 chr4 188530170 188530193 -13798154 + AT_rich Low_complexity Low_complexity 1 23 0 364 213 11 14 chr4 188530250 188530354 -13797993 - L1ME3A LINE L1 -3 6159 6057 275 358 0 32 chr4 188531230 188531353 -13796994 - MER5A DNA MER1_type -31 158 40 22 0 0 0 chr4 188531564 188531586 -13796761 + AT_rich Low_complexity Low_complexity 1 22 0 3144 164 25 3 chr4 188531788 188532356 -13795991 + LTR22 LTR ERVK 1 580 0 441 301 77 86 chr4 188532789 188532912 -13795435 - L2 LINE L2 -47 3266 3143 2088 116 3 7 chr4 188532912 188533205 -13795142 + AluSp SINE Alu 3 294 -19 441 301 77 86 chr4 188533205 188533709 -13794638 - L2 LINE L2 -170 3143 2629 684 290 121 29 chr4 188533723 188534071 -13794276 + L2 LINE L2 2066 2445 -869 260 306 167 7 chr4 188534071 188534215 -13794132 - L2 LINE L2 -3140 174 8 3860 200 40 13 chr4 188534848 188536039 -13792308 + L1PB4 LINE L1 4935 6146 -10 372 22 0 0 chr4 188536047 188536092 -13792255 + (CA)n Simple_repeat Simple_repeat 2 46 0 299 340 14 48 chr4 188536098 188536245 -13792102 + MIR3 SINE MIR 3 144 -64 593 268 22 0 chr4 188537967 188538105 -13790242 + MER5A DNA MER1_type 47 187 -2 191 287 35 11 chr4 188538616 188538703 -13789644 + MIR SINE MIR 33 121 -141 25 90 0 0 chr4 188540340 188540407 -13787940 + AT_rich Low_complexity Low_complexity 1 67 0 5456 122 10 37 chr4 188540869 188541123 -13787224 - L1PA13 LINE L1 -4 6159 5900 2278 216 70 17 chr4 188541123 188541725 -13786622 - LTR27 LTR ERV1 0 636 3 5456 122 10 37 chr4 188541725 188542435 -13785912 - L1PA13 LINE L1 -263 5900 5220 217 355 33 41 chr4 188542461 188542582 -13785765 - L2 LINE L2 0 3272 3153 362 311 73 18 chr4 188542850 188543245 -13785102 - L1M4 LINE L1 -3597 2549 2133 24 96 0 0 chr4 188543304 188543377 -13784970 + AT_rich Low_complexity Low_complexity 1 73 0 2917 164 22 0 chr4 188543454 188543960 -13784387 + L1PA13 LINE L1 5633 6149 -14 657 218 0 8 chr4 188544165 188544298 -13784049 - FLAM_C SINE Alu -1 132 1 328 273 31 17 chr4 188544501 188544632 -13783715 - HAL1b LINE L1 -817 531 420 22 35 0 0 chr4 188545262 188545291 -13783056 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 188545543 188545566 -13782781 + AT_rich Low_complexity Low_complexity 1 23 0 2878 72 74 10 chr4 188545648 188545688 -13782659 - MLT2A1 LTR ERVL 0 444 408 396 0 0 0 chr4 188545688 188545732 -13782615 + (TA)n Simple_repeat Simple_repeat 2 45 0 2878 72 74 10 chr4 188545732 188546108 -13782239 - MLT2A1 LTR ERVL -36 408 1 5054 67 3 0 chr4 188546108 188546751 -13781596 - HERVL-A1 LTR ERVL 0 5654 5010 337 209 0 0 chr4 188546832 188546899 -13781448 + AluS SINE Alu 231 297 -4 15560 96 4 55 chr4 188547236 188550356 -13777991 + L1PA7 LINE L1 3101 6151 -3 700 178 8 23 chr4 188550525 188550654 -13777693 - FLAM_C SINE Alu -5 128 2 188 283 0 0 chr4 188550657 188550703 -13777644 - L2 LINE L2 -11 3302 3257 249 346 75 66 chr4 188550826 188550942 -13777405 - L3 LINE CR1 -615 962 849 2010 122 30 0 chr4 188550942 188551238 -13777109 - AluSp SINE Alu -6 307 3 249 346 75 66 chr4 188551238 188551453 -13776894 - L3 LINE CR1 -728 849 628 333 353 36 6 chr4 188551634 188551801 -13776546 - MIR SINE MIR -86 176 5 223 357 0 0 chr4 188551806 188551862 -13776485 - L3 LINE CR1 -1314 263 208 1268 223 39 11 chr4 188552399 188552681 -13775666 - AluJo SINE Alu -22 290 1 230 353 29 0 chr4 188552849 188552951 -13775396 - MER91A DNA MER1_type -43 153 49 211 329 35 12 chr4 188553071 188553156 -13775191 + L2 LINE L2 3150 3236 -36 4363 240 52 11 chr4 188553357 188555314 -13773033 + L1M3f LINE L1 14 2056 -4065 5483 179 15 4 chr4 188555332 188556797 -13771550 - L1PA16 LINE L1 -9 6157 4678 1246 186 60 28 chr4 188556807 188557291 -13771056 + L1M3f LINE L1 2049 2549 -3779 1785 154 3 0 chr4 188557654 188557939 -13770408 - L1MC1 LINE L1 -1 6332 6047 508 122 174 0 chr4 188557939 188558037 -13770310 - Tigger4(Zombi) DNA MER2_type -410 2321 2207 1608 152 108 181 chr4 188558038 188558808 -13769539 + LTR12 LTR ERV1 1 714 0 11731 156 33 38 chr4 188558808 188559789 -13768558 - Tigger4(Zombi) DNA MER2_type -522 2209 1225 2629 42 0 0 chr4 188559789 188560100 -13768247 + AluY SINE Alu 1 311 0 11731 156 33 38 chr4 188560100 188561338 -13767009 - Tigger4(Zombi) DNA MER2_type -1506 1225 1 8489 244 39 21 chr4 188561338 188563521 -13764826 - L1MCa LINE L1 -784 5642 3397 527 226 61 9 chr4 188563521 188563636 -13764711 - FLAM_A SINE Alu -12 121 1 8489 244 39 21 chr4 188563636 188564184 -13764163 - L1MCa LINE L1 -3029 3397 2861 585 247 0 43 chr4 188564301 188564487 -13763860 - L1MCa LINE L1 -3546 2880 2703 2090 155 93 14 chr4 188564490 188564973 -13763374 - L1MCa LINE L1 -4964 1462 942 4415 184 45 47 chr4 188565238 188566191 -13762156 - L1MCa LINE L1 -5471 955 5 1962 167 77 20 chr4 188566294 188566696 -13761651 - MSTA LTR MaLR -3 425 1 2165 115 13 0 chr4 188566854 188567159 -13761188 - AluSp SINE Alu -2 311 3 200 328 0 30 chr4 188567918 188568052 -13760295 + CT-rich Low_complexity Low_complexity 3 132 0 36 70 0 0 chr4 188568978 188569049 -13759298 + AT_rich Low_complexity Low_complexity 1 71 0 246 81 0 0 chr4 188569361 188569398 -13758949 + (TA)n Simple_repeat Simple_repeat 2 38 0 238 250 141 43 chr4 188570124 188570216 -13758131 + MIR SINE MIR 49 149 -113 1567 178 70 75 chr4 188570229 188570645 -13757702 + MLT2D LTR ERVL 1 414 0 6326 190 36 10 chr4 188570836 188572020 -13756327 - ERVL LTR ERVL -851 4913 3699 956 235 99 124 chr4 188572134 188572216 -13756131 - MLT2D LTR ERVL 0 414 331 270 0 0 0 chr4 188572216 188572246 -13756101 + (GA)n Simple_repeat Simple_repeat 2 31 0 956 235 99 124 chr4 188572246 188572639 -13755708 - MLT2D LTR ERVL -83 331 1 441 183 32 12 chr4 188572768 188572882 -13755465 - MLT2D LTR ERVL -322 92 1 1977 141 7 0 chr4 188573554 188573851 -13754496 - AluSq SINE Alu -14 299 1 665 294 67 76 chr4 188574945 188575380 -13752967 - L2 LINE L2 -2 3311 2881 486 307 7 0 chr4 188575458 188575595 -13752752 - MER63A DNA MER1_type -15 195 58 319 353 63 19 chr4 188576195 188576402 -13751945 + MIR SINE MIR 22 237 -25 210 309 193 6 chr4 188576443 188576624 -13751723 + MIR SINE MIR 40 254 -8 24 0 0 0 chr4 188576943 188576967 -13751380 + AT_rich Low_complexity Low_complexity 1 24 0 375 323 54 8 chr4 188578467 188578597 -13749750 + L2 LINE L2 3137 3272 0 22 35 0 0 chr4 188579190 188579219 -13749128 + AT_rich Low_complexity Low_complexity 1 29 0 219 69 0 0 chr4 188580954 188580983 -13747364 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 196 350 112 14 chr4 188583534 188583677 -13744670 - L2 LINE L2 -247 3025 2869 280 337 159 51 chr4 188583903 188584589 -13743758 - L2 LINE L2 -713 2601 1842 1997 82 25 11 chr4 188584717 188585034 -13743313 + AluSc SINE Alu 1 309 0 1038 228 132 59 chr4 188585500 188586232 -13742115 - MER69 DNA AcHobo -2 2524 493 230 328 56 36 chr4 188586598 188586689 -13741658 - L2 LINE L2 0 3313 3225 261 0 0 0 chr4 188586689 188586718 -13741629 + (CA)n Simple_repeat Simple_repeat 2 30 0 230 328 56 36 chr4 188586718 188586821 -13741526 - L2 LINE L2 -88 3225 3115 1696 201 42 5 chr4 188586929 188587308 -13741039 - L1MB7 LINE L1 -19 6165 5773 1281 190 30 30 chr4 188587320 188587615 -13740732 - L1MB1 LINE L1 -6 6162 5868 2063 212 61 26 chr4 188587619 188588317 -13740030 + L1MB1 LINE L1 5153 5882 -409 345 24 0 0 chr4 188588368 188588410 -13739937 + (CA)n Simple_repeat Simple_repeat 2 43 0 2130 108 7 0 chr4 188588542 188588837 -13739510 - AluSg SINE Alu -13 297 1 221 213 21 0 chr4 188589001 188589048 -13739299 + A-rich Low_complexity Low_complexity 2 49 0 21 0 0 0 chr4 188589642 188589663 -13738684 + AT_rich Low_complexity Low_complexity 1 21 0 1265 227 10 3 chr4 188589831 188590131 -13738216 - L1MB1 LINE L1 -6 6162 5861 215 315 22 22 chr4 188590712 188590804 -13737543 + MER5B DNA MER1_type 25 116 -62 2129 51 4 15 chr4 188590816 188591090 -13737257 + AluY SINE Alu 41 311 0 237 296 25 12 chr4 188592330 188592411 -13735936 - L2 LINE L2 0 3272 3191 294 246 16 41 chr4 188592462 188592584 -13735763 + (TATG)n Simple_repeat Simple_repeat 2 120 0 279 338 61 40 chr4 188592995 188593193 -13735154 + MIR SINE MIR 61 262 0 711 303 58 23 chr4 188593494 188593837 -13734510 + L1M4 LINE L1 516 870 -5672 212 0 36 0 chr4 188593910 188593938 -13734409 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 657 226 19 84 chr4 188593939 188594200 -13734147 + L1M4 LINE L1 880 1123 -5419 * 668 255 85 0 chr4 188594195 188594407 -13733940 + L1M4 LINE L1 2715 2944 -3700 2871 246 74 23 chr4 188594410 188594997 -13733350 + L1M4 LINE L1 3185 3741 -2903 1503 178 40 10 chr4 188594997 188595295 -13733052 - AluJb SINE Alu -5 307 1 2871 246 74 23 chr4 188595295 188595807 -13732540 + L1M4 LINE L1 3741 4349 -2295 2380 78 0 3 chr4 188595807 188596114 -13732233 + AluY SINE Alu 1 306 -5 2871 246 74 23 chr4 188596114 188596177 -13732170 + L1M4 LINE L1 4349 4407 -2237 205 310 17 0 chr4 188596606 188596664 -13731683 + MIR SINE MIR 81 139 -123 1962 87 14 17 chr4 188596850 188597139 -13731208 + AluY SINE Alu 1 288 -23 282 56 0 0 chr4 188598228 188598264 -13730083 + (TTTC)n Simple_repeat Simple_repeat 3 38 0 215 309 48 0 chr4 188598641 188598725 -13729622 - MIR SINE MIR -69 193 106 1542 151 159 88 chr4 188598785 188599162 -13729185 - MER4A LTR ERV1 0 664 261 422 126 103 11 chr4 188599163 188599250 -13729097 - MER4A LTR ERV1 -567 97 3 397 143 0 77 chr4 188601422 188601513 -13726834 - MER3 DNA MER1_type -22 187 104 1984 133 3 3 chr4 188601577 188601886 -13726461 + AluSc SINE Alu 1 309 0 2234 99 7 3 chr4 188602010 188602314 -13726033 - AluSx SINE Alu -7 305 1 225 374 112 34 chr4 188602387 188602593 -13725754 + L2 LINE L2 2834 3055 -258 183 156 0 0 chr4 188602668 188602700 -13725647 + (CAT)n Simple_repeat Simple_repeat 2 33 0 403 305 124 26 chr4 188602700 188602926 -13725421 - MIR SINE MIR -4 258 11 294 315 115 23 chr4 188602927 188603057 -13725290 + L2 LINE L2 3171 3312 -1 33 0 0 0 chr4 188603080 188603113 -13725234 + AT_rich Low_complexity Low_complexity 1 33 0 450 279 34 119 chr4 188603484 188603896 -13724451 - MLT1I LTR MaLR -32 377 1 313 252 144 0 chr4 188604292 188604403 -13723944 - L3b LINE CR1 -208 1375 1249 998 115 0 0 chr4 188604412 188604551 -13723796 + AluSg/x SINE Alu 157 295 -17 279 0 0 0 chr4 188605132 188605163 -13723184 + (A)n Simple_repeat Simple_repeat 1 31 0 2265 101 0 0 chr4 188605233 188605529 -13722818 - AluSg SINE Alu -14 296 1 280 190 25 0 chr4 188607491 188607570 -13720777 + (TATATG)n Simple_repeat Simple_repeat 2 82 0 221 345 20 54 chr4 188611415 188611563 -13716784 + L2 LINE L2 1725 1867 -1447 239 423 29 12 chr4 188611853 188612099 -13716248 + L2 LINE L2 2439 2688 -626 203 278 139 37 chr4 188612162 188612270 -13716077 - MER5A DNA MER1_type -22 167 49 2109 117 0 0 chr4 188612440 188612763 -13715584 + AluSg SINE Alu 1 323 0 1887 146 0 14 chr4 188612923 188613210 -13715137 + AluSq SINE Alu 1 283 -30 21 36 0 0 chr4 188613450 188613478 -13714869 + AT_rich Low_complexity Low_complexity 1 28 0 2269 54 3 20 chr4 188613513 188613808 -13714539 + AluY SINE Alu 1 290 -21 25 51 0 0 chr4 188614379 188614418 -13713929 + AT_rich Low_complexity Low_complexity 1 39 0 1526 184 4 7 chr4 188614880 188615158 -13713189 + MER47A DNA MER2_type 1 277 -89 246 178 44 0 chr4 188615259 188615304 -13713043 + MER47A DNA MER2_type 320 366 0 24 32 0 0 chr4 188615584 188615615 -13712732 + AT_rich Low_complexity Low_complexity 1 31 0 369 231 123 15 chr4 188615966 188616096 -13712251 - MLT1E1 LTR MaLR -11 643 500 2772 174 6 37 chr4 188616098 188616639 -13711708 + MER49 LTR ERV1 5 528 -395 529 179 15 60 chr4 188616639 188616773 -13711574 - MER49 LTR ERV1 -253 670 543 1536 193 12 39 chr4 188616815 188617068 -13711279 + MER49 LTR ERV1 596 839 -84 2054 113 3 7 chr4 188617068 188617369 -13710978 + AluSx SINE Alu 1 300 -12 1536 193 12 39 chr4 188617369 188617452 -13710895 + MER49 LTR ERV1 839 923 0 1221 225 15 0 chr4 188617656 188617923 -13710424 - MLT1E1 LTR MaLR -382 272 2 788 233 23 198 chr4 188617936 188618270 -13710077 - MLT1E1-int LTR MaLR -24 1347 1231 2095 209 24 2 chr4 188618270 188618687 -13709660 - MSTB LTR MaLR 0 426 1 788 233 23 198 chr4 188618687 188619147 -13709200 - MLT1E1-int LTR MaLR -140 1231 692 1469 253 27 27 chr4 188619351 188619845 -13708502 - MLT1E1-int LTR MaLR -769 602 1 4119 168 16 19 chr4 188619888 188620634 -13707713 + Tigger2 DNA MER2_type 1 744 -1974 1231 197 32 0 chr4 188620701 188620950 -13707397 + Tigger2 DNA MER2_type 2462 2718 0 1053 269 45 5 chr4 188620954 188621402 -13706945 - MLT1E1 LTR MaLR -64 590 92 243 217 17 0 chr4 188621420 188621480 -13706867 + L1MC4 LINE L1 6643 6703 -1339 300 179 54 0 chr4 188621941 188621997 -13706350 - MLT1E1 LTR MaLR -595 59 1 334 265 0 12 chr4 188622065 188622148 -13706199 - L2 LINE L2 -775 2539 2458 23 0 0 0 chr4 188622431 188622454 -13705893 + AT_rich Low_complexity Low_complexity 1 23 0 192 421 0 0 chr4 188622704 188622811 -13705536 + L2 LINE L2 2929 3035 -237 24 0 0 0 chr4 188623295 188623319 -13705028 + AT_rich Low_complexity Low_complexity 1 24 0 48 53 0 0 chr4 188623392 188623468 -13704879 + AT_rich Low_complexity Low_complexity 1 76 0 955 151 146 0 chr4 188623570 188623789 -13704558 - L1MA7 LINE L1 -2 6289 6039 5711 21 0 0 chr4 188624342 188624998 -13703349 + L1PA3 LINE L1 5497 6152 -3 5201 84 101 1 chr4 188625467 188626218 -13702129 - LTR12 LTR ERV1 0 826 1 874 381 72 21 chr4 188626490 188626501 -13701846 + L2 LINE L2 1939 1948 -1366 563 230 0 0 chr4 188626501 188626627 -13701720 - L1PB4 LINE L1 -5 6151 6026 874 381 72 21 chr4 188626627 188627512 -13700835 + L2 LINE L2 1948 2881 -433 23 33 0 0 chr4 188627940 188627970 -13700377 + AT_rich Low_complexity Low_complexity 1 30 0 1481 216 7 4 chr4 188628319 188628597 -13699750 - AluJo SINE Alu -30 282 4 180 77 0 0 chr4 188629458 188629484 -13698863 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 222 299 137 0 chr4 188629839 188629956 -13698391 - L2 LINE L2 -1292 2022 1890 414 0 0 0 chr4 188630246 188630292 -13698055 + (TG)n Simple_repeat Simple_repeat 2 47 0 368 332 171 0 chr4 188630431 188630642 -13697705 + MIR SINE MIR 1 247 -15 354 287 70 23 chr4 188630940 188631069 -13697278 - MIR SINE MIR -31 231 97 452 247 134 16 chr4 188632712 188632959 -13695388 - MER113 DNA MER1_type? -218 303 28 241 233 217 0 chr4 188633223 188633283 -13695064 + LTR67 LTR ERVL 108 180 -377 2080 141 36 33 chr4 188633290 188633653 -13694694 - THE1B LTR MaLR 0 364 1 228 284 27 0 chr4 188633877 188633951 -13694396 + LTR67 LTR ERVL 481 556 -1 3362 145 5 45 chr4 188634052 188634681 -13693666 + L1PB3 LINE L1 5549 6152 -2 335 316 40 89 chr4 188635511 188635837 -13692510 + L2 LINE L2 391 700 -2614 998 290 81 91 chr4 188635984 188636881 -13691466 + L2 LINE L2 1064 1951 -1363 3612 227 26 12 chr4 188637131 188637934 -13690413 - ERVL LTR ERVL -257 5507 4694 * 5555 224 77 18 chr4 188637931 188639476 -13688871 - ERVL LTR ERVL -2064 3700 1987 639 294 43 22 chr4 188639534 188639905 -13688442 + L1 LINE L1 3478 3856 -2290 708 293 26 22 chr4 188640098 188640330 -13688017 + LTR16A LTR ERVL 218 450 0 583 304 97 40 chr4 188640332 188640583 -13687764 + L1 LINE L1 3863 4149 -1997 688 249 77 5 chr4 188640583 188640792 -13687555 - MER58A DNA MER1_type 0 224 1 583 304 97 40 chr4 188640792 188640964 -13687383 + L1 LINE L1 4149 4310 -1836 448 339 68 40 chr4 188640968 188641322 -13687025 + L1ME LINE L1 139 502 -5703 1259 35 12 17 chr4 188641412 188641584 -13686763 - L1P LINE L1 -877 5269 5099 3924 28 0 2 chr4 188641584 188642040 -13686307 + L1PA4 LINE L1 5693 6155 0 314 246 62 95 chr4 188642157 188642461 -13685886 + L1ME LINE L1 690 979 -5226 613 317 23 29 chr4 188642471 188642947 -13685400 + L1ME LINE L1 968 1440 -4777 2650 51 0 0 chr4 188642947 188643258 -13685089 - AluY SINE Alu 0 311 1 665 78 0 0 chr4 188643280 188643370 -13684977 - Alu SINE Alu -2 309 220 348 286 34 34 chr4 188643374 188643552 -13684795 + L1ME LINE L1 1576 1753 -4643 24 32 0 0 chr4 188643700 188643731 -13684616 + AT_rich Low_complexity Low_complexity 1 31 0 232 206 40 87 chr4 188643922 188644000 -13684347 + L1ME LINE L1 2057 2128 -4268 2221 103 3 3 chr4 188644000 188644311 -13684036 + AluY SINE Alu 1 311 0 232 206 40 87 chr4 188644311 188644358 -13683989 + L1ME LINE L1 2128 2176 -4220 26 30 0 0 chr4 188644384 188644417 -13683930 + AT_rich Low_complexity Low_complexity 1 33 0 2420 274 78 11 chr4 188644430 188645305 -13683042 - L1MEc LINE L1 -5423 973 41 387 275 42 8 chr4 188645407 188645527 -13682820 + L2 LINE L2 3177 3300 -13 1154 327 82 48 chr4 188645580 188646878 -13681469 + L2 LINE L2 872 2214 -1100 1479 188 20 27 chr4 188647366 188647659 -13680688 + AluJo SINE Alu 11 301 -11 319 311 72 60 chr4 188647689 188647940 -13680407 - L1ME LINE L1 -359 5762 5509 237 324 62 7 chr4 188647964 188648109 -13680238 + L1ME LINE L1 5523 5675 -446 1935 160 0 13 chr4 188648109 188648416 -13679931 - AluSx SINE Alu -9 303 1 2117 122 0 3 chr4 188648441 188648752 -13679595 - AluSg SINE Alu 0 310 1 303 354 24 33 chr4 188648934 188649146 -13679201 - MIR SINE MIR -13 249 40 1949 120 70 9 chr4 188650518 188650884 -13677463 + LTR7 LTR ERV1 1 449 -1 1857 200 47 27 chr4 188650885 188651335 -13677012 + HERVH LTR ERV1 1 459 -7254 10792 187 55 40 chr4 188651393 188654139 -13674208 + HERVH LTR ERV1 800 3586 -4127 692 145 8 0 chr4 188654138 188654262 -13674085 + HERVH LTR ERV1 3811 3935 -3778 * 462 82 27 0 chr4 188654262 188654335 -13674012 - Alu SINE Alu -2 310 236 7200 105 6 56 chr4 188654335 188655489 -13672858 + HERVH LTR ERV1 3925 5020 -2693 2701 104 14 14 chr4 188655493 188655924 -13672423 + HERVH LTR ERV1 7283 7713 0 1974 103 90 10 chr4 188655924 188656292 -13672055 + LTR7 LTR ERV1 1 450 0 189 154 0 0 chr4 188656609 188656648 -13671699 + A-rich Low_complexity Low_complexity 5 43 0 570 260 45 40 chr4 188657520 188657697 -13670650 - MLT1K LTR MaLR -58 530 353 817 152 0 8 chr4 188657902 188658034 -13670313 + FLAM_C SINE Alu 1 131 -2 22 0 0 0 chr4 188658447 188658469 -13669878 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 0 chr4 188659408 188659433 -13668914 + (A)n Simple_repeat Simple_repeat 1 25 0 515 204 30 23 chr4 188659725 188659859 -13668488 - MER21B LTR ERV1 -77 854 657 22 0 0 0 chr4 188660150 188660172 -13668175 + AT_rich Low_complexity Low_complexity 1 22 0 214 302 151 36 chr4 188660549 188660688 -13667659 - MIR3 SINE MIR -20 188 34 348 267 153 43 chr4 188661758 188661952 -13666395 + MIR3 SINE MIR 8 216 -46 562 182 0 0 chr4 188662164 188662263 -13666084 - FLAM_A SINE Alu -43 99 1 355 358 107 19 chr4 188662595 188662810 -13665537 + MIR SINE MIR 28 261 -1 227 374 78 0 chr4 188663702 188663817 -13664530 - L2 LINE L2 -15 3257 3134 252 100 0 0 chr4 188663831 188663871 -13664476 + (CA)n Simple_repeat Simple_repeat 2 41 0 183 80 0 0 chr4 188665245 188665270 -13663077 + (TC)n Simple_repeat Simple_repeat 1 25 0 29 47 0 0 chr4 188667151 188667194 -13661153 + AT_rich Low_complexity Low_complexity 1 43 0 285 58 58 0 chr4 188669074 188669126 -13659221 + CT-rich Low_complexity Low_complexity 1 55 0 23 33 0 0 chr4 188669976 188670006 -13658341 + AT_rich Low_complexity Low_complexity 1 30 0 212 217 0 43 chr4 188671126 188671195 -13657152 + CT-rich Low_complexity Low_complexity 2 67 0 333 296 160 24 chr4 188671720 188671970 -13656377 - L2 LINE L2 -4 3309 3026 275 259 0 0 chr4 188671971 188672025 -13656322 - MER2 DNA MER2_type -1 344 291 870 145 55 0 chr4 188672049 188672194 -13656153 - MER2 DNA MER2_type -171 174 22 308 294 11 33 chr4 188672195 188672287 -13656060 - L2 LINE L2 -279 3034 2945 559 340 45 5 chr4 188672435 188672635 -13655712 + MIR SINE MIR 3 210 -52 1730 273 102 60 chr4 188672686 188673604 -13654743 - L2 LINE L2 -631 2683 1727 288 306 18 0 chr4 188674074 188674185 -13654162 - LTR33A LTR ERVL 0 523 411 283 256 98 0 chr4 188674630 188674712 -13653635 - LTR50 LTR ERVL -703 92 3 195 339 0 0 chr4 188674973 188675029 -13653318 + L2 LINE L2 3252 3307 -6 391 224 52 43 chr4 188675076 188675192 -13653155 + MER3 DNA MER1_type 36 152 -57 738 206 65 0 chr4 188675196 188675526 -13652821 + MER3 DNA MER1_type 2234 2585 0 641 231 119 0 chr4 188675542 188675702 -13652645 + MER5A DNA MER1_type 9 187 -2 3021 194 50 38 chr4 188676174 188676890 -13651457 - LTR8A LTR ERV1 -2 725 1 330 288 0 0 chr4 188677999 188678072 -13650275 - L2 LINE L2 -223 3049 2977 201 176 0 0 chr4 188679221 188679255 -13649092 + (TA)n Simple_repeat Simple_repeat 2 35 0 1262 195 62 98 chr4 188679276 188679757 -13648590 - MLT2C2 LTR ERVL 0 464 1 1271 336 66 45 chr4 188680110 188680695 -13647652 - ERVL LTR ERVL -2883 2881 2310 264 111 0 0 chr4 188680695 188680740 -13647607 + (TG)n Simple_repeat Simple_repeat 2 46 0 1271 336 66 45 chr4 188680740 188681468 -13646879 - ERVL LTR ERVL -3454 2310 1540 889 233 0 0 chr4 188681975 188682164 -13646183 + MER105 DNA DNA 16 204 0 2948 158 8 26 chr4 188682707 188683214 -13645133 - MER61D LTR ERV1 0 501 4 260 289 6 77 chr4 188683369 188683525 -13644822 - LTR33 LTR ERVL -70 451 307 22 80 0 0 chr4 188683798 188683848 -13644499 + AT_rich Low_complexity Low_complexity 1 50 0 197 179 0 36 chr4 188684694 188684750 -13643597 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 652 348 59 19 chr4 188685473 188685895 -13642452 - L2 LINE L2 -64 3249 2811 1447 192 24 11 chr4 188686815 188687102 -13641245 + AluJo SINE Alu 6 296 -16 25 51 0 0 chr4 188687507 188687546 -13640801 + AT_rich Low_complexity Low_complexity 1 39 0 196 357 0 24 chr4 188687739 188687823 -13640524 - MIR SINE MIR -140 122 41 707 202 8 0 chr4 188689631 188689760 -13638587 - FLAM_C SINE Alu -13 130 1 649 224 8 0 chr4 188691041 188691166 -13637181 - FLAM_A SINE Alu -7 126 1 1965 141 16 37 chr4 188692755 188692951 -13635396 + THE1C LTR MaLR 1 187 -188 1647 205 33 12 chr4 188692951 188693287 -13635060 - MER61A LTR ERV1 0 343 1 1965 141 16 37 chr4 188693287 188693473 -13634874 + THE1C LTR MaLR 187 375 0 1731 203 48 79 chr4 188693586 188693880 -13634467 - MLT1C LTR MaLR 0 467 192 2153 120 0 0 chr4 188693880 188694172 -13634175 - AluSq SINE Alu -21 292 1 1731 203 48 79 chr4 188694172 188694359 -13633988 - MLT1C LTR MaLR -275 192 1 1468 239 104 20 chr4 188694359 188694799 -13633548 - MLT1H LTR MaLR -22 527 51 2432 198 31 8 chr4 188695147 188695663 -13632684 + LTR24B LTR ERV1 1 528 -48 1611 179 3 17 chr4 188695666 188695967 -13632380 + AluJo SINE Alu 1 297 -15 353 122 0 0 chr4 188695978 188696051 -13632296 + Alu SINE Alu 234 306 0 278 128 0 21 chr4 188696053 188696100 -13632247 + LTR24B LTR ERV1 525 570 -6 2330 84 0 16 chr4 188697053 188697361 -13630986 - AluY SINE Alu -8 303 1 240 327 35 18 chr4 188698094 188698207 -13630140 + MIR SINE MIR 30 144 -64 22 56 0 0 chr4 188698217 188698253 -13630094 + AT_rich Low_complexity Low_complexity 1 36 0 4506 187 59 21 chr4 188699220 188701095 -13627252 + L1M4c LINE L1 19 2111 -4273 1783 218 5 5 chr4 188701095 188701504 -13626843 + L1MB3 LINE L1 5772 6180 -3 206 137 20 39 chr4 188701959 188702010 -13626337 + T-rich Low_complexity Low_complexity 2 51 0 201 328 0 8 chr4 188702985 188703104 -13625243 + A-rich Low_complexity Low_complexity 2 119 0 7568 25 0 2 chr4 188703322 188704698 -13623649 + L1PA3 LINE L1 4779 6152 -3 299 281 54 32 chr4 188704741 188704949 -13623398 + L1 LINE L1 3718 3930 -2216 2082 131 76 18 chr4 188704957 188705300 -13623047 + THE1B LTR MaLR 1 363 -1 10967 103 17 3 chr4 188705301 188706859 -13621488 + THE1B-int LTR MaLR 1 1580 0 2223 114 76 15 chr4 188706859 188707202 -13621145 + THE1B LTR MaLR 1 364 0 3310 191 52 114 chr4 188707571 188708714 -13619633 + Tigger6a DNA MER2_type 1 1083 0 857 226 120 8 chr4 188708836 188709070 -13619277 + Tigger6 DNA MER2_type 48 307 -776 22 0 0 0 chr4 188709961 188709983 -13618364 + AT_rich Low_complexity Low_complexity 1 22 0 349 368 7 14 chr4 188710403 188710547 -13617800 + MIR SINE MIR 12 154 -108 22 0 0 0 chr4 188710574 188710596 -13617751 + AT_rich Low_complexity Low_complexity 1 22 0 492 271 83 21 chr4 188712199 188712391 -13615956 - MIR SINE MIR -1 261 58 281 288 36 0 chr4 188713130 188713241 -13615106 + MIR SINE MIR 135 249 -13 216 158 0 0 chr4 188714283 188714321 -13614026 + GA-rich Low_complexity Low_complexity 3 40 0 2281 88 3 0 chr4 188716324 188716618 -13611729 - AluSp SINE Alu -18 295 1 29 47 0 0 chr4 188716688 188716731 -13611616 + AT_rich Low_complexity Low_complexity 1 43 0 227 311 0 0 chr4 188716955 188717016 -13611331 + MIR SINE MIR 34 94 -168 1493 207 3 13 chr4 188717063 188717363 -13610984 - AluJb SINE Alu -15 297 1 289 282 254 0 chr4 188717374 188717484 -13610863 + MIR SINE MIR 104 241 -21 585 232 24 6 chr4 188717847 188718011 -13610336 + MER96B DNA MER1_type? 248 414 -3 401 289 64 43 chr4 188718166 188718353 -13609994 - L2 LINE L2 -838 2476 2286 454 350 44 15 chr4 188718604 188718807 -13609540 + MIR SINE MIR 36 244 -18 645 302 36 18 chr4 188718838 188719063 -13609284 + MIR SINE MIR 20 248 -14 186 43 0 0 chr4 188719538 188719561 -13608786 + (TTG)n Simple_repeat Simple_repeat 2 24 0 21 82 0 0 chr4 188720721 188720770 -13607577 + AT_rich Low_complexity Low_complexity 1 49 0 24 32 0 0 chr4 188721375 188721406 -13606941 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr4 188721552 188721585 -13606762 + AT_rich Low_complexity Low_complexity 1 33 0 2054 131 0 3 chr4 188722136 188722433 -13605914 + AluSg SINE Alu 1 296 -14 255 61 0 0 chr4 188723485 188723518 -13604829 + (CA)n Simple_repeat Simple_repeat 2 34 0 2212 211 95 61 chr4 188723873 188724672 -13603675 + LTR1B LTR ERV1 1 826 0 2240 107 10 0 chr4 188724781 188725089 -13603258 + AluSx SINE Alu 1 311 -1 21 82 0 0 chr4 188725254 188725303 -13603044 + AT_rich Low_complexity Low_complexity 1 49 0 953 161 111 5 chr4 188725382 188725599 -13602748 + L1MA4 LINE L1 5991 6230 -70 181 271 29 71 chr4 188725787 188725857 -13602490 + L2 LINE L2 3229 3295 -18 428 191 87 49 chr4 188726048 188726214 -13602133 - MER69A DNA AcHobo 0 177 6 217 273 0 0 chr4 188726445 188726500 -13601847 + MIR SINE MIR 66 120 -142 580 244 99 30 chr4 188726533 188726734 -13601613 - MIR SINE MIR -21 241 27 407 249 47 112 chr4 188726834 188727111 -13601236 - LTR16A1 LTR ERVL -3 454 196 1527 189 42 17 chr4 188727336 188727706 -13600641 + Tigger3(Golem) DNA MER2_type 1 3028 -1 1849 189 60 0 chr4 188729420 188729785 -13598562 - MER57A LTR ERV1 -16 387 1 2067 99 4 0 chr4 188730133 188730405 -13597942 - AluSc SINE Alu -36 273 1 802 128 0 0 chr4 188730591 188730708 -13597639 - AluJb SINE Alu -13 299 183 734 188 8 0 chr4 188730708 188730836 -13597511 - FLAM_C SINE Alu -9 134 6 1266 159 5 18 chr4 188730965 188731185 -13597162 - MER101B LTR ERV1 -353 217 1 1576 213 88 48 chr4 188732034 188732089 -13596258 - MLT2B1 LTR ERVL -13 507 456 415 0 18 18 chr4 188732089 188732145 -13596202 + (TA)n Simple_repeat Simple_repeat 1 56 0 1576 213 88 48 chr4 188732145 188732564 -13595783 - MLT2B1 LTR ERVL -64 456 14 1307 191 34 30 chr4 188732564 188732862 -13595485 - ERVL-B1 LTR ERVL 0 5764 5466 285 51 0 0 chr4 188732862 188732901 -13595446 + (CA)n Simple_repeat Simple_repeat 2 40 0 522 110 0 0 chr4 188732981 188733075 -13595272 + AluSg/x SINE Alu 210 303 0 8798 193 40 9 chr4 188733083 188734779 -13593568 - ERVL-B1 LTR ERVL -739 5025 3279 1106 224 4 12 chr4 188734795 188735041 -13593306 - AluJo SINE Alu -68 244 1 4277 211 68 29 chr4 188735045 188735572 -13592775 - ERVL-B1 LTR ERVL -4591 1173 668 360 0 0 0 chr4 188735572 188735612 -13592735 + (TG)n Simple_repeat Simple_repeat 2 41 0 4277 211 68 29 chr4 188735612 188736133 -13592214 - ERVL-B1 LTR ERVL -5096 668 2 339 119 0 34 chr4 188736134 188736193 -13592154 - MLT2B1 LTR ERVL 0 520 464 1522 251 101 5 chr4 188736229 188736673 -13591674 - MLT2B1 LTR ERVL -20 534 3 2206 76 14 0 chr4 188736673 188736777 -13591570 + AluY SINE Alu 16 117 -194 225 0 0 0 chr4 188736777 188736802 -13591545 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2206 76 14 0 chr4 188736802 188736974 -13591373 + AluY SINE Alu 117 296 -15 264 226 71 24 chr4 188737977 188738061 -13590286 + MER5C DNA MER1_type 36 123 -201 248 171 214 0 chr4 188738095 188738165 -13590182 + MER5C DNA MER1_type 240 324 0 244 261 200 0 chr4 188738364 188738479 -13589868 - MLT1L LTR MaLR -56 559 422 455 301 33 27 chr4 188738558 188738741 -13589606 - MLT1L LTR MaLR -325 290 107 216 329 137 44 chr4 188738871 188739215 -13589132 - L2 LINE L2 -1135 2179 1804 816 231 23 0 chr4 188739255 188739428 -13588919 + MLT1D LTR MaLR 1 177 -328 577 123 17 1 chr4 188739442 188739536 -13588811 - L1MA10 LINE L1 -58 6267 6010 618 152 6 43 chr4 188739542 188739706 -13588641 + CT-rich Low_complexity Low_complexity 4 161 0 204 222 11 33 chr4 188739723 188739813 -13588534 + CT-rich Low_complexity Low_complexity 3 90 0 1153 227 96 3 chr4 188739839 188740152 -13588195 + MLT1D LTR MaLR 164 505 0 26 0 0 0 chr4 188740314 188740340 -13588007 + AT_rich Low_complexity Low_complexity 1 26 0 27 49 0 0 chr4 188740378 188740419 -13587928 + AT_rich Low_complexity Low_complexity 1 41 0 690 333 82 30 chr4 188740446 188740945 -13587402 + L2 LINE L2 2275 2799 -515 282 274 14 116 chr4 188740975 188741121 -13587226 + L2 LINE L2 3176 3306 -7 250 376 32 8 chr4 188741253 188741378 -13586969 + L2 LINE L2 3171 3298 -15 186 43 0 0 chr4 188741383 188741406 -13586941 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 1344 211 64 68 chr4 188741443 188741706 -13586641 - MLT1D LTR MaLR 0 505 243 1995 130 7 0 chr4 188741706 188742006 -13586341 - AluSc SINE Alu -7 302 1 1344 211 64 68 chr4 188742006 188742229 -13586118 - MLT1D LTR MaLR -262 243 21 869 242 11 0 chr4 188742360 188742538 -13585809 + MER5A DNA MER1_type 10 189 0 23 68 0 0 chr4 188742922 188742966 -13585381 + AT_rich Low_complexity Low_complexity 1 44 0 2209 103 75 17 chr4 188743415 188743763 -13584584 - THE1C LTR MaLR -7 368 1 243 169 42 0 chr4 188743871 188743942 -13584405 + GA-rich Low_complexity Low_complexity 3 76 0 1896 119 45 0 chr4 188744546 188744840 -13583507 + AluSx SINE Alu 5 310 0 667 273 88 5 chr4 188744843 188745037 -13583310 + MLT1H LTR MaLR 24 233 -316 525 313 42 66 chr4 188745077 188745412 -13582935 + MLT1H LTR MaLR 223 549 0 372 196 41 10 chr4 188747222 188747523 -13580824 + (TA)n Simple_repeat Simple_repeat 1 310 0 950 70 0 0 chr4 188747540 188747655 -13580692 - AluSg/x SINE Alu -24 288 174 776 236 0 6 chr4 188747667 188747828 -13580519 - FAM SINE Alu -18 167 8 1419 193 14 28 chr4 188747856 188748146 -13580201 - AluJb SINE Alu -24 288 3 3084 217 37 17 chr4 188748211 188748613 -13579734 - L1MB7 LINE L1 -177 6007 5614 2149 132 86 27 chr4 188748613 188749021 -13579326 - MSTB1 LTR MaLR 0 432 1 3084 217 37 17 chr4 188749021 188749664 -13578683 - L1MB7 LINE L1 -570 5614 4937 766 214 26 7 chr4 188749678 188749832 -13578515 - AluJb SINE Alu -13 299 143 917 118 12 16 chr4 188749953 188750493 -13577854 - HSATII Satellite Satellite 0 537 1 760 135 18 18 chr4 188750518 188750688 -13577659 - HSATII Satellite Satellite 0 170 1 947 107 3 30 chr4 188750719 188751027 -13577320 - HSATII Satellite Satellite -1 299 1 1001 117 14 10 chr4 188751136 188753769 -13574578 - HSATII Satellite Satellite -8 2644 1 965 102 8 15 chr4 188753791 188754953 -13573394 - HSATII Satellite Satellite 0 1153 1 823 118 18 18 chr4 188754980 188755150 -13573197 - HSATII Satellite Satellite 0 170 1 980 103 12 8 chr4 188755181 188755937 -13572410 - HSATII Satellite Satellite -27 759 1 911 128 11 6 chr4 188756042 188756519 -13571828 - HSATII Satellite Satellite 0 479 1 998 115 8 10 chr4 188756531 188757048 -13571299 - HSATII Satellite Satellite -8 516 1 965 118 14 18 chr4 188757059 188758190 -13570157 - HSATII Satellite Satellite -8 1126 1 998 102 7 19 chr4 188758212 188758833 -13569514 - HSATII Satellite Satellite -9 613 1 953 110 16 5 chr4 188758846 188759959 -13568388 - HSATII Satellite Satellite 0 1124 1 986 113 13 12 chr4 188759989 188762202 -13566145 - HSATII Satellite Satellite 0 2216 1 932 126 9 19 chr4 188762232 188762677 -13565670 - HSATII Satellite Satellite -27 440 1 965 115 9 15 chr4 188762692 188764450 -13563897 - HSATII Satellite Satellite -27 1746 1 998 102 7 17 chr4 188764475 188765199 -13563148 - HSATII Satellite Satellite -50 717 1 977 117 13 16 chr4 188765218 188768003 -13560344 - HSATII Satellite Satellite -8 2778 1 998 111 12 18 chr4 188768025 188771119 -13557228 - HSATII Satellite Satellite 0 3073 1 963 244 17 23 chr4 188771239 188771583 -13556764 - L1M4 LINE L1 -1553 5404 5063 5099 220 49 24 chr4 188771587 188772927 -13555420 - L1MC2 LINE L1 -8 6336 5031 2283 97 0 0 chr4 188772927 188773226 -13555121 - AluY SINE Alu -12 299 1 198 0 0 0 chr4 188773229 188773251 -13555096 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 5099 220 49 24 chr4 188773251 188773915 -13554432 - L1MC2 LINE L1 -1314 5030 4384 249 33 0 0 chr4 188773915 188773945 -13554402 + (TTG)n Simple_repeat Simple_repeat 1 30 0 5099 220 49 24 chr4 188773945 188774555 -13553792 - L1MC2 LINE L1 -1960 4384 3648 4752 140 39 37 chr4 188774555 188775043 -13553304 - Tigger2 DNA MER2_type 0 2718 2226 1953 141 14 0 chr4 188775043 188775334 -13553013 + AluSx SINE Alu 1 295 -17 4752 140 39 37 chr4 188775334 188775708 -13552639 - Tigger2 DNA MER2_type -492 2226 1854 10197 137 28 6 chr4 188775709 188777378 -13550969 - Tigger2 DNA MER2_type -1013 1705 1 1999 236 34 47 chr4 188777384 188777807 -13550540 - L1M4 LINE L1 -2503 4454 4027 1760 194 39 12 chr4 188777807 188778143 -13550204 + MER7A DNA MER2_type 4 346 0 1999 236 34 47 chr4 188778143 188778750 -13549597 - L1M4 LINE L1 -2930 4027 3478 24 53 0 0 chr4 188778964 188779002 -13549345 + AT_rich Low_complexity Low_complexity 1 38 0 3947 246 44 12 chr4 188779122 188780137 -13548210 - L1M4 LINE L1 -5794 1065 18 36 40 0 0 chr4 188780143 188780193 -13548154 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr4 188780619 188780641 -13547706 + AT_rich Low_complexity Low_complexity 1 22 0 3682 162 16 14 chr4 188781266 188781933 -13546414 - LTR51 LTR ERV1 0 671 3 1979 163 50 24 chr4 188782357 188782737 -13545610 + MLT1B LTR MaLR 1 390 0 653 249 73 29 chr4 188782767 188783012 -13545335 - MER46C DNA MER2_type 0 338 83 2211 125 3 0 chr4 188783391 188783703 -13544644 - AluSq SINE Alu 0 313 1 1438 234 73 13 chr4 188784351 188784732 -13543615 + MLT1C LTR MaLR 59 462 -5 690 184 68 31 chr4 188784836 188784999 -13543348 + MLT1B LTR MaLR 1 169 -221 23 54 0 0 chr4 188785450 188785487 -13542860 + AT_rich Low_complexity Low_complexity 1 37 0 199 82 0 61 chr4 188786032 188786081 -13542266 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 361 141 24 0 chr4 188788534 188788619 -13539728 + (TG)n Simple_repeat Simple_repeat 2 88 0 189 107 0 0 chr4 188790714 188790742 -13537605 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 258 216 0 0 chr4 188793438 188793512 -13534835 + T-rich Low_complexity Low_complexity 1 74 0 256 327 9 0 chr4 188794226 188794339 -13534008 + CT-rich Low_complexity Low_complexity 2 115 0 23 0 0 0 chr4 188797102 188797125 -13531222 + GC_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr4 188797990 188798012 -13530335 + (TC)n Simple_repeat Simple_repeat 1 22 0 321 319 88 23 chr4 188804182 188804398 -13523949 - HAL1 LINE L1 0 2507 2278 1736 204 36 11 chr4 188804530 188804888 -13523459 - MLT1A2 LTR MaLR 0 374 8 1074 179 46 0 chr4 188804888 188805084 -13523263 - MLT1A2-int LTR MaLR -19 1716 1512 350 307 34 0 chr4 188805085 188805173 -13523174 - MLT1A2-int LTR MaLR -332 1403 1313 38537 85 13 7 chr4 188805927 188808244 -13520103 + L1PA6 LINE L1 13 2314 -3840 378 0 0 0 chr4 188808244 188808286 -13520061 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 38537 85 13 7 chr4 188808286 188812073 -13516274 + L1PA6 LINE L1 2314 6152 -2 232 267 23 0 chr4 188812229 188812315 -13516032 - L1MC4 LINE L1 -1340 6702 6615 277 228 43 43 chr4 188812322 188812414 -13515933 + L1MC4 LINE L1 6614 6705 -1337 303 213 0 0 chr4 188812419 188812499 -13515848 + (TA)n Simple_repeat Simple_repeat 1 80 0 281 294 150 31 chr4 188812512 188812933 -13515414 - L1ME LINE L1 -368 5728 5258 182 37 37 0 chr4 188812934 188812961 -13515386 + (TC)n Simple_repeat Simple_repeat 1 28 0 311 285 96 61 chr4 188812969 188813161 -13515186 - L1ME LINE L1 -811 5269 5060 3046 101 70 4 chr4 188813161 188813617 -13514730 + LTR19A LTR ERV1 1 486 0 311 285 96 61 chr4 188813617 188813736 -13514611 - L1ME LINE L1 -1020 5060 4947 254 238 90 25 chr4 188813742 188813864 -13514483 - L1P LINE L1 -1140 5006 4877 1119 282 122 8 chr4 188814000 188814401 -13513946 + LTR40c LTR ERVL 10 456 -9 568 285 82 34 chr4 188814683 188815157 -13513190 - L1ME LINE L1 -2688 3392 2896 273 253 11 74 chr4 188815163 188815258 -13513089 - L1ME LINE L1 -4641 1620 1532 931 233 32 103 chr4 188815260 188815328 -13513019 - MLT1A1 LTR MaLR 0 365 294 2117 100 0 21 chr4 188815328 188815650 -13512697 + AluY SINE Alu 1 316 0 931 233 32 103 chr4 188815650 188815991 -13512356 - MLT1A1 LTR MaLR -71 294 15 1054 289 133 46 chr4 188816032 188817253 -13511094 - L1ME LINE L1 -4622 1458 123 448 242 50 0 chr4 188817255 188817375 -13510972 - L1MC3 LINE L1 -923 6862 6737 910 267 18 29 chr4 188818188 188818469 -13509878 - MLT1C LTR MaLR 0 467 190 197 152 0 0 chr4 188818521 188818554 -13509793 - L2 LINE L2 -10 3303 3271 779 193 27 37 chr4 188818616 188818803 -13509544 - MLT1C LTR MaLR -281 186 2 2386 124 40 11 chr4 188818931 188819285 -13509062 - THE1B LTR MaLR 0 364 1 21 82 0 0 chr4 188819358 188819407 -13508940 + AT_rich Low_complexity Low_complexity 1 49 0 31 26 0 0 chr4 188820624 188820662 -13507685 + AT_rich Low_complexity Low_complexity 1 38 0 186 43 0 0 chr4 188821009 188821032 -13507315 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2020 120 3 3 chr4 188821034 188821317 -13507030 - AluSx SINE Alu -29 283 1 1255 178 49 28 chr4 188822184 188822607 -13505740 - MLT2A2 LTR ERVL -2 451 94 303 122 0 0 chr4 188822911 188822960 -13505387 + (CA)n Simple_repeat Simple_repeat 2 50 0 189 152 0 0 chr4 188823250 188823283 -13505064 - L2 LINE L2 -10 3303 3271 273 143 91 39 chr4 188823461 188823570 -13504777 + GA-rich Low_complexity Low_complexity 1 114 0 183 80 0 0 chr4 188824042 188824067 -13504280 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2363 280 120 25 chr4 188824179 188824839 -13503508 + MER69B DNA AcHobo 1 792 -1734 1903 136 87 25 chr4 188824839 188825162 -13503185 - MER61A LTR ERV1 0 343 1 2363 280 120 25 chr4 188825162 188825519 -13502828 + MER69B DNA AcHobo 792 1114 -112 2120 121 0 10 chr4 188825721 188826010 -13502337 - AluSx SINE Alu -26 286 1 743 227 37 50 chr4 188826437 188826509 -13501838 + MER6A DNA MER2_type 2 73 -532 2494 167 40 62 chr4 188826509 188827005 -13501342 - MER66B LTR ERV1 0 486 2 743 227 37 50 chr4 188827005 188827174 -13501173 + MER6A DNA MER2_type 73 240 -365 429 298 0 0 chr4 188827183 188827361 -13500986 + (TG)n Simple_repeat Simple_repeat 2 179 0 485 264 0 11 chr4 188827386 188827568 -13500779 + (TG)n Simple_repeat Simple_repeat 1 180 0 304 85 71 71 chr4 188827581 188827722 -13500625 + (TGAG)n Simple_repeat Simple_repeat 4 144 0 3338 182 34 14 chr4 188827778 188828422 -13499925 + MER6A DNA MER2_type 209 605 0 26 0 0 0 chr4 188829011 188829037 -13499310 + AT_rich Low_complexity Low_complexity 1 26 0 1715 224 13 40 chr4 188829150 188829186 -13499161 - MLT1A1 LTR MaLR 0 365 330 2439 76 0 0 chr4 188829186 188829490 -13498857 - AluY SINE Alu -7 304 1 1715 224 13 40 chr4 188829490 188829828 -13498519 - MLT1A1 LTR MaLR -35 330 1 7444 213 51 34 chr4 188829828 188831527 -13496820 - MLT1A1-int LTR MaLR 0 1735 9 1994 210 14 0 chr4 188831537 188831894 -13496453 - MLT1A1 LTR MaLR -2 363 2 249 357 10 0 chr4 188831918 188832016 -13496331 - L2 LINE L2 0 3272 3174 304 294 119 7 chr4 188832348 188832491 -13495856 - MIR SINE MIR -22 240 82 647 260 75 41 chr4 188832755 188833074 -13495273 + L1MC4 LINE L1 4454 4783 -1363 1100 213 5 125 chr4 188833075 188833438 -13494909 - MLT1A1 LTR MaLR -53 375 1 2007 249 71 27 chr4 188833570 188834356 -13493991 + L1ME2 LINE L1 5341 6161 -3 23 33 0 0 chr4 188835575 188835605 -13492742 + AT_rich Low_complexity Low_complexity 1 30 0 249 299 24 16 chr4 188835720 188835847 -13492500 + L1MC4 LINE L1 4891 5018 -1128 2333 106 3 0 chr4 188836002 188836314 -13492033 + AluSq SINE Alu 1 313 0 1292 222 82 57 chr4 188836446 188836955 -13491392 + L1MC4 LINE L1 5295 5816 -1992 3216 240 96 48 chr4 188836968 188838015 -13490332 + L1MC4 LINE L1 6691 7813 -229 2587 30 3 0 chr4 188838015 188838315 -13490032 - AluY SINE Alu -2 309 9 3216 240 96 48 chr4 188838315 188838557 -13489790 + L1MC4 LINE L1 7813 8042 0 29 47 0 0 chr4 188838617 188838660 -13489687 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr4 188840365 188840388 -13487959 + AT_rich Low_complexity Low_complexity 1 23 0 1492 210 11 11 chr4 188840550 188840836 -13487511 - AluJo SINE Alu -26 286 1 391 336 38 58 chr4 188840945 188841508 -13486839 - L2 LINE L2 -940 2374 1776 21 0 0 0 chr4 188842040 188842061 -13486286 + AT_rich Low_complexity Low_complexity 1 21 0 6818 186 42 9 chr4 188842589 188844871 -13483476 + L1MA7 LINE L1 3928 6289 -2 23 54 0 0 chr4 188845775 188845812 -13482535 + AT_rich Low_complexity Low_complexity 1 37 0 235 152 0 0 chr4 188845816 188845862 -13482485 + LTR66 LTR ERVL 394 439 -171 578 231 106 5 chr4 188846266 188846465 -13481882 + LTR33 LTR ERVL 46 264 -257 1082 283 98 21 chr4 188846608 188847035 -13481312 - MLT2B1 LTR ERVL -60 460 1 2386 302 116 31 chr4 188847056 188848366 -13479981 - L2 LINE L2 -1872 1442 22 243 324 57 9 chr4 188849083 188849188 -13479159 - L2 LINE L2 -2993 321 212 351 121 0 0 chr4 188849496 188849554 -13478793 + (GA)n Simple_repeat Simple_repeat 2 59 0 1675 150 23 10 chr4 188849958 188850258 -13478089 + AluJo SINE Alu 1 304 -8 312 330 0 9 chr4 188850530 188850642 -13477705 - MLT1I LTR MaLR -236 173 63 1527 189 0 36 chr4 188851815 188852121 -13476226 - AluJb SINE Alu -11 301 7 1579 237 11 16 chr4 188852510 188852877 -13475470 + MLT1A1 LTR MaLR 1 365 0 26 0 0 0 chr4 188852902 188852928 -13475419 + AT_rich Low_complexity Low_complexity 1 26 0 5426 28 0 2 chr4 188853188 188853830 -13474517 - L1PA3 LINE L1 -1 6154 5514 24 67 0 0 chr4 188853832 188853877 -13474470 + AT_rich Low_complexity Low_complexity 1 45 0 220 301 54 76 chr4 188854690 188855006 -13473341 - L2 LINE L2 -2146 1168 860 704 283 51 95 chr4 188855109 188855523 -13472824 - L2 LINE L2 0 3313 2938 2947 177 29 26 chr4 188855523 188855893 -13472454 - L1PB4 LINE L1 -1 6155 5781 192 40 0 0 chr4 188855893 188855918 -13472429 + (TG)n Simple_repeat Simple_repeat 2 26 0 2947 177 29 26 chr4 188855918 188856169 -13472178 - L1PB4 LINE L1 -375 5781 5532 704 283 51 95 chr4 188856169 188856572 -13471775 - L2 LINE L2 -375 2938 2519 202 302 0 0 chr4 188856593 188856656 -13471691 - L2 LINE L2 -903 2411 2349 27 73 0 0 chr4 188857976 188858031 -13470316 + AT_rich Low_complexity Low_complexity 1 55 0 347 330 0 0 chr4 188858148 188858236 -13470111 - MIR SINE MIR -117 145 58 417 313 85 17 chr4 188858258 188858434 -13469913 + MIR SINE MIR 27 214 -48 2112 106 0 17 chr4 188858790 188859083 -13469264 - AluSq SINE Alu -21 292 5 367 301 26 56 chr4 188859696 188859962 -13468385 - L1MEd LINE L1 -5270 849 592 306 302 82 0 chr4 188860284 188860443 -13467904 - L1MEd LINE L1 -5890 229 58 1414 181 78 53 chr4 188861136 188861200 -13467147 - MLT1A2 LTR MaLR -4 370 309 2044 118 0 16 chr4 188861200 188861514 -13466833 + AluSc SINE Alu 1 309 0 1414 181 78 53 chr4 188861514 188861809 -13466538 - MLT1A2 LTR MaLR -65 309 2 12271 78 8 5 chr4 188861920 188864353 -13463994 - L1PA7 LINE L1 0 6154 3703 457 117 3 14 chr4 188864415 188864505 -13463842 - MLT1A1 LTR MaLR -51 416 250 222 193 0 0 chr4 188865050 188865107 -13463240 + (TA)n Simple_repeat Simple_repeat 2 58 0 322 239 11 0 chr4 188865165 188865253 -13463094 + (TA)n Simple_repeat Simple_repeat 1 89 0 1624 169 40 13 chr4 188866421 188866723 -13461624 - AluSg SINE Alu 0 310 1 1518 129 133 0 chr4 188867108 188867364 -13460983 - AluSx SINE Alu -18 294 5 1025 277 126 66 chr4 188867408 188867894 -13460453 - MLT1H1 LTR MaLR -33 562 3 243 298 188 32 chr4 188868257 188868475 -13459872 - MLT1L LTR MaLR -2 613 362 * 341 279 164 15 chr4 188868468 188868669 -13459678 - MLT1L LTR MaLR -366 249 19 386 245 51 0 chr4 188871168 188871266 -13457081 + MER103 DNA DNA 1 103 -63 504 291 81 49 chr4 188872411 188872658 -13455689 + MIR SINE MIR 8 262 0 2279 122 25 11 chr4 188873202 188873556 -13454791 - THE1B LTR MaLR 0 364 6 237 65 0 0 chr4 188873746 188873777 -13454570 + (TAA)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr4 188873886 188873907 -13454440 + AT_rich Low_complexity Low_complexity 1 21 0 893 170 30 27 chr4 188874158 188874210 -13454137 - L1MB2 LINE L1 -2 6181 6131 1622 116 9 4 chr4 188874210 188874443 -13453904 - AluSg/x SINE Alu -2 310 77 893 170 30 27 chr4 188874443 188874609 -13453738 - L1MB2 LINE L1 -52 6131 5969 7026 147 58 18 chr4 188875725 188876978 -13451369 - HSMAR2 DNA Mariner 0 1302 1 444 314 39 13 chr4 188880140 188880296 -13448051 - MIR SINE MIR -59 203 44 273 208 0 0 chr4 188880394 188880466 -13447881 + GA-rich Low_complexity Low_complexity 1 72 0 258 56 0 0 chr4 188881154 188881190 -13447157 + (TG)n Simple_repeat Simple_repeat 1 36 0 807 30 0 4 chr4 188881703 188881802 -13446545 - L1P LINE L1 -957 5189 5092 3642 32 9 0 chr4 188881802 188882273 -13446074 + L1PA3 LINE L1 5706 6181 0 807 30 0 4 chr4 188882273 188882284 -13446063 - L1P LINE L1 -1054 5092 5082 2315 76 3 10 chr4 188883095 188883398 -13444949 + AluSg SINE Alu 2 302 -8 614 284 56 22 chr4 188883790 188884022 -13444325 - MIR SINE MIR -16 246 7 27 0 0 0 chr4 188884042 188884069 -13444278 + AT_rich Low_complexity Low_complexity 1 27 0 2698 17 3 0 chr4 188885992 188886293 -13442054 - AluY SINE Alu -9 302 1 183 340 94 38 chr4 188887213 188887319 -13441028 - MIR3 SINE MIR -30 178 67 216 67 0 0 chr4 188887504 188887534 -13440813 + (CA)n Simple_repeat Simple_repeat 1 30 0 181 286 0 0 chr4 188888349 188888384 -13439963 + L2 LINE L2 3222 3256 -16 1681 240 42 30 chr4 188888427 188888902 -13439445 - L1ME1 LINE L1 -18 6148 5668 699 291 46 21 chr4 188889232 188889473 -13438874 - MIR SINE MIR -3 259 13 33 0 0 0 chr4 188889859 188889892 -13438455 + AT_rich Low_complexity Low_complexity 1 33 0 1185 193 62 108 chr4 188890305 188890788 -13437559 + MLT1C LTR MaLR 1 461 -6 3756 138 86 29 chr4 188894066 188894517 -13433830 + MER50 LTR ERV1 1 506 -228 18380 86 20 0 chr4 188894517 188897897 -13430450 + L1PA7 LINE L1 2763 6154 0 3756 138 86 29 chr4 188897897 188898128 -13430219 + MER50 LTR ERV1 506 722 -12 264 30 0 0 chr4 188898333 188898366 -13429981 + (TG)n Simple_repeat Simple_repeat 2 34 0 358 238 20 30 chr4 188899068 188899169 -13429178 - MIR SINE MIR -20 242 143 29 28 0 0 chr4 188899632 188899668 -13428679 + AT_rich Low_complexity Low_complexity 1 36 0 433 311 105 11 chr4 188900608 188900798 -13427549 - MIR SINE MIR -46 216 9 372 285 167 7 chr4 188900829 188900967 -13427380 - MER5A DNA MER1_type 0 189 28 5988 133 19 16 chr4 188900967 188901933 -13426414 - LTR5 LTR ERVK 0 969 1 326 100 17 0 chr4 188902034 188902094 -13426253 + (TC)n Simple_repeat Simple_repeat 1 61 0 1521 226 29 47 chr4 188902253 188902739 -13425608 + MLT1D LTR MaLR 22 498 -7 36 62 0 0 chr4 188902967 188903031 -13425316 + AT_rich Low_complexity Low_complexity 1 64 0 957 228 48 68 chr4 188903073 188903428 -13424919 - MLT1D LTR MaLR -101 404 57 773 146 8 15 chr4 188903835 188903965 -13424382 - AluJo SINE Alu -175 137 9 2373 161 48 7 chr4 188905692 188906107 -13422240 - Tigger2a DNA MER2_type -1 433 2 646 235 54 41 chr4 188906559 188906780 -13421567 - MLT1A2 LTR MaLR 0 374 151 235 192 5 16 chr4 188906789 188906819 -13421528 - L1MB4 LINE L1 -1 6182 6153 2195 129 3 0 chr4 188906819 188907121 -13421226 + AluSx SINE Alu 1 303 -9 372 43 0 0 chr4 188907121 188907167 -13421180 + (TA)n Simple_repeat Simple_repeat 2 47 0 235 192 5 16 chr4 188907167 188907219 -13421128 - L1MB4 LINE L1 -28 6155 6100 825 222 0 6 chr4 188907222 188907384 -13420963 - MLT1A2 LTR MaLR -213 161 1 34 57 0 34 chr4 188909356 188909444 -13418903 + AT_rich Low_complexity Low_complexity 1 85 0 2198 112 86 69 chr4 188910412 188910596 -13417751 + MSTA LTR MaLR 1 180 -248 1969 141 0 0 chr4 188910596 188910879 -13417468 + AluSx SINE Alu 3 285 -27 2198 112 86 69 chr4 188910879 188911113 -13417234 + MSTA LTR MaLR 180 426 -2 447 245 63 14 chr4 188911821 188911964 -13416383 + L1ME3 LINE L1 6012 6161 -1 1517 148 62 4 chr4 188911975 188912218 -13416129 + AluSp SINE Alu 27 283 -30 204 257 0 0 chr4 188912911 188912981 -13415366 + CT-rich Low_complexity Low_complexity 3 72 0 5849 201 44 33 chr4 188913789 188914359 -13413988 - L1M1 LINE L1 -2399 5166 4604 2256 61 16 42 chr4 188914359 188914670 -13413677 - AluY SINE Alu -8 303 1 5849 201 44 33 chr4 188914670 188916345 -13412002 - L1M1 LINE L1 -2961 4604 2895 1933 189 68 34 chr4 188916361 188916805 -13411542 - LTR2B LTR ERV1 0 490 32 2934 166 50 3 chr4 188916839 188917489 -13410858 - L1M1 LINE L1 -4709 2856 2214 1555 219 0 6 chr4 188917495 188917810 -13410537 + MER57A LTR ERV1 88 400 -3 1039 191 25 5 chr4 188917843 188918047 -13410300 - L1M1 LINE L1 -7331 234 27 2350 185 35 5 chr4 188918134 188918556 -13409791 - Tigger2 DNA MER2_type 0 2718 2284 3297 36 0 0 chr4 188918580 188918971 -13409376 + L1PA3 LINE L1 5762 6152 -3 359 154 0 46 chr4 188919143 188919208 -13409139 - Tigger2 DNA MER2_type -2656 62 1 1913 94 0 0 chr4 188919424 188919679 -13408668 - AluY SINE Alu 0 311 57 1090 203 37 64 chr4 188919702 188919998 -13408349 + MLT1B LTR MaLR 101 388 -2 739 244 42 36 chr4 188920344 188920704 -13407643 + Charlie1 DNA MER1_type 2385 2746 -15 10740 228 59 34 chr4 188921016 188927001 -13401346 + L1MA10 LINE L1 1 5831 -567 342 0 0 0 chr4 188927001 188927039 -13401308 + (CA)n Simple_repeat Simple_repeat 2 39 0 10740 228 59 34 chr4 188927039 188927400 -13400947 + L1MA10 LINE L1 5831 6238 -160 249 33 0 0 chr4 188927400 188927430 -13400917 + (TAA)n Simple_repeat Simple_repeat 1 30 0 10740 228 59 34 chr4 188927430 188927577 -13400770 + L1MA10 LINE L1 6238 6380 -18 299 360 86 32 chr4 188927591 188927963 -13400384 + L2 LINE L2 2432 2823 -491 875 292 117 13 chr4 188927965 188928342 -13400005 + MLT1H LTR MaLR 3 418 -131 197 361 98 22 chr4 188928522 188928705 -13399642 + L2 LINE L2 2898 3094 -219 2145 133 3 0 chr4 188929010 188929319 -13399028 - AluSx SINE Alu -2 310 1 2227 181 12 24 chr4 188929328 188929743 -13398604 - MSTC LTR MaLR 0 428 19 35 0 0 0 chr4 188930708 188930743 -13397604 + AT_rich Low_complexity Low_complexity 1 35 0 949 292 118 32 chr4 188930952 188931445 -13396902 + MLT1H1 LTR MaLR 3 537 -18 966 229 28 0 chr4 188931482 188931700 -13396647 - MER58A DNA MER1_type 0 224 1 537 255 136 25 chr4 188932706 188932949 -13395398 - L1ME1 LINE L1 -5 6161 5892 1432 203 111 42 chr4 188932966 188933202 -13395145 - L1MA7 LINE L1 -6 6285 6067 2244 95 24 0 chr4 188933202 188933498 -13394849 - AluSg SINE Alu -7 303 1 1432 203 111 42 chr4 188933498 188933642 -13394705 - L1MA7 LINE L1 -224 6067 5610 494 193 131 28 chr4 188933642 188933818 -13394529 - L1MC4 LINE L1 -2161 6275 6082 316 267 111 52 chr4 188933823 188933995 -13394352 + MLT1B LTR MaLR 3 184 -206 675 156 0 85 chr4 188934111 188934252 -13394095 + MLT1B LTR MaLR 262 390 0 2049 162 38 30 chr4 188934259 188934686 -13393661 - MSTB1 LTR MaLR -2 430 1 2078 246 86 36 chr4 188934702 188934880 -13393467 - L1MC4 LINE L1 -489 6071 5903 579 81 30 0 chr4 188934880 188934979 -13393368 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 2078 246 86 36 chr4 188934979 188935740 -13392607 - L1MC4 LINE L1 -657 5903 5067 302 0 26 0 chr4 188935740 188935778 -13392569 + (TG)n Simple_repeat Simple_repeat 2 40 0 2078 246 86 36 chr4 188935778 188936062 -13392285 - L1MC4 LINE L1 -1493 5067 4799 609 267 79 17 chr4 188936109 188936401 -13391946 - L1MC4 LINE L1 -2603 3937 3628 * 1829 238 98 25 chr4 188936391 188938768 -13389579 - L1MC4 LINE L1 -3158 3382 806 613 225 93 28 chr4 188938783 188938965 -13389382 - MLT1C LTR MaLR -273 194 1 1797 201 31 20 chr4 188939108 188939500 -13388847 + MSTD LTR MaLR 1 396 0 282 306 51 51 chr4 188939530 188939726 -13388621 - L1MC4 LINE L1 -6330 210 15 * 327 273 56 20 chr4 188939723 188939972 -13388375 - L1ME LINE L1 -3981 2099 1842 208 185 62 0 chr4 188939985 188940050 -13388297 + (TA)n Simple_repeat Simple_repeat 1 69 0 1696 287 87 27 chr4 188940124 188941368 -13386979 - L1ME LINE L1 -4454 1626 334 225 379 28 23 chr4 188941514 188941691 -13386656 - L1ME LINE L1 -5882 188 11 22 0 0 0 chr4 188941834 188941856 -13386491 + AT_rich Low_complexity Low_complexity 1 22 0 30 93 0 0 chr4 188943106 188943192 -13385155 + AT_rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr4 188943250 188943271 -13385076 + AT_rich Low_complexity Low_complexity 1 21 0 396 265 42 74 chr4 188943598 188943813 -13384534 - MER21B LTR ERV1 -558 305 98 273 228 178 30 chr4 188943789 188943890 -13384457 - MER77 LTR ERV1 -411 194 79 * 2117 161 159 58 chr4 188944486 188945033 -13383314 + MER6A DNA MER2_type 4 605 0 2091 195 30 34 chr4 188945171 188945643 -13382704 - LTR42 LTR ERVL -1 494 25 655 318 33 4 chr4 188945767 188946009 -13382338 - MIR SINE MIR -3 259 11 1984 127 0 0 chr4 188946075 188946387 -13381960 + AluSx SINE Alu 1 312 0 23 33 0 0 chr4 188947528 188947558 -13380789 + AT_rich Low_complexity Low_complexity 1 30 0 1348 204 18 14 chr4 188947567 188947851 -13380496 - AluJo SINE Alu -27 285 1 2241 73 0 0 chr4 188947907 188948182 -13380165 - AluY SINE Alu -36 275 1 935 300 69 13 chr4 188950466 188950783 -13377564 - LTR16A LTR ERVL 0 450 116 767 163 5 33 chr4 188952030 188952214 -13376133 + GA-rich Low_complexity Low_complexity 2 180 0 1817 141 33 7 chr4 188952263 188952562 -13375785 - AluJb SINE Alu -5 307 1 323 300 33 0 chr4 188952618 188952708 -13375639 - MIR SINE MIR -113 149 57 35 78 0 0 chr4 188954580 188954657 -13373690 + AT_rich Low_complexity Low_complexity 1 77 0 2368 70 0 10 chr4 188955528 188955842 -13372505 - AluY SINE Alu 0 311 1 658 286 131 9 chr4 188956274 188956603 -13371744 - L1ME3A LINE L1 -208 5962 5594 307 143 41 0 chr4 188957548 188957597 -13370750 + MLT1E1 LTR MaLR 1 51 -603 1009 245 61 0 chr4 188957630 188957875 -13370472 + MLT1E3 LTR MaLR 365 624 0 307 276 119 8 chr4 188957876 188958010 -13370337 - L1ME3A LINE L1 -1000 5146 4998 329 278 81 43 chr4 188958106 188958340 -13370007 + L1M4 LINE L1 4377 4619 -1527 1782 121 28 0 chr4 188958407 188958689 -13369658 + AluJb SINE Alu 14 303 -9 491 250 29 52 chr4 188958732 188958904 -13369443 + MER97a DNA MER1_type? 9 176 -718 268 293 142 26 chr4 188958954 188959186 -13369161 + L1M4 LINE L1 4740 4998 -1148 43465 43 1 1 chr4 188961458 188967614 -13360733 - L1PA3 LINE L1 -3 6152 1 1514 155 4 4 chr4 188967928 188968173 -13360174 - AluSx SINE Alu -8 304 60 180 111 0 0 chr4 188969332 188969359 -13358988 + (TA)n Simple_repeat Simple_repeat 1 27 0 297 0 0 0 chr4 188969445 188969478 -13358869 + (TG)n Simple_repeat Simple_repeat 2 34 0 1208 146 19 9 chr4 188969528 188969740 -13358607 + L1 LINE L1 3353 3566 -2580 1469 204 41 81 chr4 188969774 188970216 -13358131 - MSTB1 LTR MaLR -3 429 6 1058 211 9 0 chr4 188970220 188970443 -13357904 + L1 LINE L1 3579 3803 -2343 333 141 0 0 chr4 189020449 189020513 -13307834 + L1MA5A LINE L1 6234 6297 0 778 203 0 0 chr4 189020574 189020727 -13307620 + L1P LINE L1 4931 5083 -1063 1279 123 20 0 chr4 189020727 189020926 -13307421 + L1PA13 LINE L1 5953 6160 -3 23 0 0 0 chr4 189021033 189021056 -13307291 + AT_rich Low_complexity Low_complexity 1 23 0 5769 106 11 5 chr4 189021639 189023147 -13305200 - L1PA13 LINE L1 -11 6152 4662 293 233 17 0 chr4 189023393 189023453 -13304894 + L2 LINE L2 3169 3229 -43 213 370 118 9 chr4 189023484 189023695 -13304652 + L2 LINE L2 1867 2100 -1214 447 19 0 0 chr4 189024009 189024061 -13304286 + (CA)n Simple_repeat Simple_repeat 2 53 0 1067 261 23 54 chr4 189025133 189025524 -13302823 - MLT2C1 LTR ERVL -7 390 12 201 421 29 0 chr4 189026429 189026569 -13301778 - L2 LINE L2 -527 2787 2644 1764 96 61 7 chr4 189026817 189027097 -13301250 + AluSx SINE Alu 4 298 -14 1105 196 36 9 chr4 189027097 189027317 -13301030 - MSTB LTR MaLR -66 360 135 2501 48 0 0 chr4 189027866 189028160 -13300187 + AluY SINE Alu 1 294 -17 1128 128 0 0 chr4 189028160 189028475 -13299872 + (TA)n Simple_repeat Simple_repeat 1 315 0 337 286 0 0 chr4 189028476 189028560 -13299787 - L1MC4 LINE L1 -1345 6697 6614 334 270 0 22 chr4 189028482 189028571 -13299776 + L1MC4 LINE L1 6614 6700 -1342 * 183 204 0 0 chr4 189028894 189028943 -13299404 + (TAA)n Simple_repeat Simple_repeat 3 51 0 434 246 34 8 chr4 189028958 189029076 -13299271 - MIR SINE MIR -21 241 121 24 67 0 0 chr4 189029660 189029705 -13298642 + AT_rich Low_complexity Low_complexity 1 45 0 28 29 0 0 chr4 189031212 189031247 -13297100 + AT_rich Low_complexity Low_complexity 1 35 0 1769 148 19 86 chr4 189031339 189031588 -13296759 + MLT1B LTR MaLR 1 212 -178 2385 101 0 0 chr4 189031588 189031894 -13296453 + AluSg SINE Alu 5 310 0 1769 148 19 86 chr4 189031894 189032062 -13296285 + MLT1B LTR MaLR 212 390 0 2485 254 25 6 chr4 189032070 189032711 -13295636 + MER82 DNA MER2_type 1 653 0 2351 75 10 10 chr4 189032924 189033232 -13295115 - AluSg SINE Alu -2 308 1 26 88 0 0 chr4 189034148 189034216 -13294131 + AT_rich Low_complexity Low_complexity 1 68 0 290 105 0 18 chr4 189035088 189035145 -13293202 + (CAAAAA)n Simple_repeat Simple_repeat 2 57 0 2170 113 10 0 chr4 189035569 189035870 -13292477 + AluSq SINE Alu 1 304 -9 4476 188 44 33 chr4 189036138 189038133 -13290214 + L1PA16 LINE L1 4130 6143 -23 2027 144 0 3 chr4 189038167 189038480 -13289867 + AluSx SINE Alu 1 312 0 352 330 73 55 chr4 189038919 189039249 -13289098 + L2 LINE L2 2279 2614 -700 350 374 123 27 chr4 189039326 189039772 -13288575 + L2 LINE L2 2806 3294 -19 24 32 0 0 chr4 189041568 189041599 -13286748 + AT_rich Low_complexity Low_complexity 1 31 0 36 23 0 0 chr4 189041769 189041812 -13286535 + AT_rich Low_complexity Low_complexity 1 43 0 339 317 62 50 chr4 189041898 189042157 -13286190 - MIR SINE MIR 0 262 1 674 165 0 0 chr4 189042264 189042379 -13285968 - THE1C LTR MaLR -8 367 253 422 328 73 82 chr4 189042659 189043327 -13285020 - L2 LINE L2 -831 2483 1822 23 0 0 0 chr4 189043797 189043820 -13284527 + AT_rich Low_complexity Low_complexity 1 23 0 2571 43 0 0 chr4 189045298 189045603 -13282744 + AluY SINE Alu 2 306 -5 180 0 0 0 chr4 189045650 189045670 -13282677 + (A)n Simple_repeat Simple_repeat 1 20 0 422 264 39 19 chr4 189045670 189045852 -13282495 - MER101 LTR ERV1 -51 519 234 264 329 20 13 chr4 189046481 189046630 -13281717 + GA-rich Low_complexity Low_complexity 2 151 0 992 99 0 0 chr4 189047721 189047852 -13280495 - AluSg SINE Alu -179 131 1 376 331 79 19 chr4 189047973 189048364 -13279983 + HAL1b LINE L1 421 851 -497 180 77 0 0 chr4 189048551 189048577 -13279770 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 313 331 66 12 chr4 189048777 189048943 -13279404 + L1 LINE L1 2267 2441 -3705 6312 253 61 42 chr4 189049100 189050572 -13277775 - L1MC/D LINE L1 -580 6056 4614 2003 125 4 0 chr4 189050572 189050895 -13277452 - AluSg SINE Alu 0 326 3 6312 253 61 42 chr4 189050895 189052716 -13275631 - L1MC/D LINE L1 -2022 4614 2693 666 234 60 39 chr4 189052716 189053123 -13275224 - MLT1C LTR MaLR 0 467 6 4336 172 62 50 chr4 189053129 189054335 -13274012 - L1MDa LINE L1 -3843 2697 1479 487 169 0 0 chr4 189054373 189054456 -13273891 - MER33 DNA MER1_type -218 106 24 1380 270 31 9 chr4 189054800 189055122 -13273225 + MER45B DNA AcHobo 1 329 -711 826 204 62 27 chr4 189055123 189055348 -13272999 + MER45B DNA AcHobo 608 840 -200 1707 191 0 0 chr4 189055363 189055646 -13272701 - AluSx SINE Alu -27 285 3 35 0 0 0 chr4 189055654 189055689 -13272658 + AT_rich Low_complexity Low_complexity 1 35 0 1929 152 7 0 chr4 189056067 189056377 -13271970 - AluSx SINE Alu 0 312 1 25 51 0 0 chr4 189056630 189056669 -13271678 + AT_rich Low_complexity Low_complexity 1 39 0 544 232 52 36 chr4 189056669 189056863 -13271484 + MER45B DNA AcHobo 832 1028 -12 1500 312 86 47 chr4 189057042 189057417 -13270930 + HERV16 LTR ERVL 1899 2258 -2738 357 24 0 0 chr4 189057417 189057459 -13270888 + (TG)n Simple_repeat Simple_repeat 1 42 0 1500 312 86 47 chr4 189057459 189058116 -13270231 + HERV16 LTR ERVL 2258 2972 -2024 2042 33 0 0 chr4 189058177 189058418 -13269929 - L1PA3 LINE L1 -55 6100 5860 258 68 23 0 chr4 189058415 189058459 -13269888 + L1PA4 LINE L1 6109 6153 -2 * 221 250 36 12 chr4 189059325 189059409 -13268938 + T-rich Low_complexity Low_complexity 4 89 0 21 0 0 0 chr4 189060563 189060584 -13267763 + AT_rich Low_complexity Low_complexity 1 21 0 266 410 44 43 chr4 189061074 189061601 -13266746 - L2 LINE L2 -2 3270 2723 1983 136 39 30 chr4 189061999 189062360 -13265987 - THE1B LTR MaLR 0 364 1 202 314 172 10 chr4 189062367 189062571 -13265776 - L2 LINE L2 -1099 2215 1979 314 286 27 43 chr4 189062602 189062787 -13265560 + L1MC5 LINE L1 7604 7785 -176 21 36 0 0 chr4 189062787 189062815 -13265532 + AT_rich Low_complexity Low_complexity 1 28 0 437 360 7 0 chr4 189064538 189064691 -13263656 + MER63A DNA MER1_type 57 210 0 1972 112 7 0 chr4 189064969 189065271 -13263076 + AluSx SINE Alu 3 306 0 1462 248 15 12 chr4 189065293 189065701 -13262646 - L1MB8 LINE L1 -21 6157 5749 1431 182 32 60 chr4 189065851 189066016 -13262331 - L1MB8 LINE L1 -451 5727 5576 2005 102 58 0 chr4 189066016 189066309 -13262038 + AluSq SINE Alu 1 310 -3 1431 182 32 60 chr4 189066309 189066490 -13261857 - L1MB8 LINE L1 -602 5576 5391 21 57 0 0 chr4 189066518 189066553 -13261794 + AT_rich Low_complexity Low_complexity 1 35 0 302 276 9 19 chr4 189066695 189066800 -13261547 + (CATATA)n Simple_repeat Simple_repeat 1 104 0 367 339 62 38 chr4 189066806 189067408 -13260939 - L1MC4a LINE L1 -785 5574 5303 531 304 71 77 chr4 189067612 189068277 -13260070 - L1MC4a LINE L1 -1103 5043 4383 234 234 0 0 chr4 189068802 189068849 -13259498 - L2 LINE L2 0 3313 3267 499 301 39 15 chr4 189068932 189069135 -13259212 - L2 LINE L2 -170 3143 2936 748 246 60 6 chr4 189070591 189070774 -13257573 + MER58A DNA MER1_type 2 194 -30 2084 123 0 0 chr4 189071455 189071762 -13256585 + AluSx SINE Alu 1 307 0 382 308 162 71 chr4 189074929 189076043 -13252304 + L2 LINE L2 1692 2906 -408 189 406 39 8 chr4 189076219 189076347 -13252000 + L2 LINE L2 2921 3052 -220 305 390 7 21 chr4 189076470 189076611 -13251736 + L2 LINE L2 3134 3272 0 25 51 0 0 chr4 189077454 189077493 -13250854 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr4 189077606 189077628 -13250719 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr4 189077892 189077915 -13250432 + (CA)n Simple_repeat Simple_repeat 2 24 0 23 54 0 0 chr4 189078469 189078506 -13249841 + AT_rich Low_complexity Low_complexity 1 37 0 792 212 70 148 chr4 189079028 189079527 -13248820 - MER67A LTR ERV1 0 543 84 401 155 60 0 chr4 189079582 189079666 -13248681 - MER67A LTR ERV1 -443 100 12 2039 113 0 7 chr4 189081820 189082136 -13246211 - AluSc SINE Alu 0 314 1 193 345 0 0 chr4 189083049 189083104 -13245243 - L2 LINE L2 -9 3304 3250 247 319 14 0 chr4 189083546 189083615 -13244732 + MER20 DNA MER1_type 1 70 -149 402 189 88 54 chr4 189083618 189083766 -13244581 - MER34 LTR ERV1 0 542 390 380 222 80 129 chr4 189083852 189084212 -13244135 - MER34C LTR ERV1 -200 365 17 705 226 0 31 chr4 189084216 189084375 -13243972 + MER20 DNA MER1_type 65 218 -1 1094 256 79 41 chr4 189086833 189087275 -13241072 - MLT1C LTR MaLR 0 467 9 21 57 0 0 chr4 189087546 189087581 -13240766 + AT_rich Low_complexity Low_complexity 1 35 0 621 296 94 38 chr4 189087807 189088179 -13240168 + LTR67 LTR ERVL 108 500 -57 22 0 0 0 chr4 189088383 189088405 -13239942 + AT_rich Low_complexity Low_complexity 1 22 0 317 264 0 0 chr4 189088742 189088848 -13239499 + (TA)n Simple_repeat Simple_repeat 1 106 0 21 71 0 0 chr4 189089023 189089065 -13239282 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr4 189089936 189089958 -13238389 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr4 189089974 189090010 -13238337 + AT_rich Low_complexity Low_complexity 1 36 0 1800 191 63 139 chr4 189090443 189091253 -13237094 - L1MB8 LINE L1 -14 6164 5417 367 248 27 0 chr4 189091257 189091352 -13236995 + MLT1J1 LTR MaLR 64 161 -285 334 92 15 15 chr4 189092054 189092119 -13236228 + (TG)n Simple_repeat Simple_repeat 2 66 0 27 0 0 0 chr4 189092174 189092201 -13236146 + AT_rich Low_complexity Low_complexity 1 27 0 250 242 10 10 chr4 189092464 189092563 -13235784 + GA-rich Low_complexity Low_complexity 1 99 0 327 310 99 21 chr4 189092968 189093210 -13235137 - L1M4 LINE L1 -627 5547 5287 211 167 15 76 chr4 189093375 189093441 -13234906 + MIR SINE MIR 200 261 -1 717 97 0 0 chr4 189093530 189093633 -13234714 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 650 139 10 0 chr4 189093635 189093736 -13234611 - AluSp/q SINE Alu -22 291 190 21 0 0 0 chr4 189094429 189094450 -13233897 + AT_rich Low_complexity Low_complexity 1 21 0 2419 72 0 0 chr4 189094918 189095222 -13233125 + AluSc SINE Alu 1 304 -5 1363 189 35 35 chr4 189095506 189095792 -13232555 + AluJo SINE Alu 1 286 -26 21 0 0 0 chr4 189095906 189095927 -13232420 + AT_rich Low_complexity Low_complexity 1 21 0 416 19 19 0 chr4 189096741 189096794 -13231553 + (TG)n Simple_repeat Simple_repeat 2 55 0 2356 70 0 0 chr4 189097895 189098193 -13230154 - AluSg SINE Alu -12 298 1 823 294 132 7 chr4 189098193 189098625 -13229722 + LTR33 LTR ERVL 27 512 -9 198 0 0 0 chr4 189099128 189099150 -13229197 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2012 136 3 3 chr4 189099752 189100061 -13228286 - AluSx SINE Alu -3 309 1 239 235 0 29 chr4 189100682 189100750 -13227597 - MLT1K LTR MaLR -25 563 498 233 310 28 0 chr4 189100803 189100874 -13227473 + CT-rich Low_complexity Low_complexity 3 75 0 189 121 0 0 chr4 189100914 189100947 -13227400 + (TC)n Simple_repeat Simple_repeat 2 34 0 2010 169 52 37 chr4 189101006 189101550 -13226797 + MLT2A2 LTR ERVL 1 554 0 2181 98 10 0 chr4 189101624 189101920 -13226427 + AluSg SINE Alu 1 299 -11 1174 276 63 43 chr4 189102180 189103003 -13225344 - L1ME LINE L1 -433 5737 4902 1006 160 14 9 chr4 189103007 189103219 -13225128 - L1MB3 LINE L1 0 6183 5971 294 324 24 0 chr4 189103240 189103410 -13224937 + (TA)n Simple_repeat Simple_repeat 2 175 0 339 291 197 49 chr4 189104816 189105242 -13223105 - L2 LINE L2 0 3313 2825 1557 74 22 35 chr4 189105245 189105500 -13222847 + L1PA8A LINE L1 5894 6145 0 537 56 0 0 chr4 189105779 189105850 -13222497 + Alu SINE Alu 231 301 -10 2233 86 0 13 chr4 189106036 189106339 -13222008 + AluSp SINE Alu 1 299 -14 28 0 0 0 chr4 189106417 189106445 -13221902 + AT_rich Low_complexity Low_complexity 1 28 0 21 89 0 0 chr4 189108240 189108296 -13220051 + AT_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr4 189109586 189109610 -13218737 + AT_rich Low_complexity Low_complexity 1 24 0 2010 109 11 3 chr4 189110071 189110380 -13217967 - AluSx SINE Alu 0 311 1 661 294 67 75 chr4 189110645 189111051 -13217296 - MER90 LTR ERV1 -7 568 165 2106 116 0 7 chr4 189111051 189111354 -13216993 + AluSx SINE Alu 1 301 -11 661 294 67 75 chr4 189111354 189111484 -13216863 - MER90 LTR ERV1 -410 165 36 675 302 32 26 chr4 189111572 189112012 -13216335 + L1MC5 LINE L1 6456 6859 -949 275 285 64 58 chr4 189112201 189112373 -13215974 + MER110-int LTR ERV1 2288 2460 -2187 3552 108 9 20 chr4 189113430 189113983 -13214364 - L1PA13 LINE L1 -5 6158 5612 1241 291 32 46 chr4 189114478 189115004 -13213343 - LTR40a LTR ERVL 0 519 1 783 288 101 28 chr4 189115249 189115645 -13212702 + MER90 LTR ERV1 56 480 -95 4563 128 36 15 chr4 189115689 189116487 -13211860 - L1MA2 LINE L1 0 6304 5490 361 276 98 52 chr4 189116903 189117189 -13211158 - L1MC4a LINE L1 -1870 5938 5640 1715 194 0 0 chr4 189117198 189117497 -13210850 + AluJo SINE Alu 1 299 -13 361 312 9 0 chr4 189117497 189117606 -13210741 - Charlie2 DNA MER1_type -2641 141 32 2003 144 21 24 chr4 189118385 189118761 -13209586 + THE1C LTR MaLR 1 375 0 487 342 91 50 chr4 189118882 189119517 -13208830 + L1MEd LINE L1 532 1192 -5013 180 111 0 0 chr4 189119523 189119550 -13208797 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 498 275 58 29 chr4 189119564 189119804 -13208543 + L1MEd LINE L1 1404 1650 -4746 532 302 16 5 chr4 189120717 189120906 -13207441 + L1ME3 LINE L1 5972 6162 0 185 254 109 18 chr4 189121024 189121079 -13207268 + L2 LINE L2 1372 1431 -1883 23 0 0 0 chr4 189121087 189121110 -13207237 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 189121219 189121240 -13207107 + AT_rich Low_complexity Low_complexity 1 21 0 264 337 90 0 chr4 189121292 189121470 -13206877 + L1MEd LINE L1 3439 3632 -2583 21 0 0 0 chr4 189121723 189121744 -13206603 + AT_rich Low_complexity Low_complexity 1 21 0 303 282 66 44 chr4 189122001 189122182 -13206165 + L1ME3A LINE L1 5763 5947 -223 21 0 0 0 chr4 189122260 189122281 -13206066 + AT_rich Low_complexity Low_complexity 1 21 0 262 304 38 32 chr4 189122349 189122507 -13205840 - MLT1J LTR MaLR -240 271 113 1522 171 52 55 chr4 189122824 189123169 -13205178 + MER2 DNA MER2_type 1 344 0 182 36 0 36 chr4 189123172 189123200 -13205147 + (CATATA)n Simple_repeat Simple_repeat 2 28 0 574 263 20 0 chr4 189123270 189123422 -13204925 - Tigger2 DNA MER2_type 0 2718 2564 * 593 187 155 16 chr4 189123419 189123606 -13204741 - Tigger2 DNA MER2_type -2505 213 1 364 279 128 34 chr4 189123619 189123798 -13204549 - MIR SINE MIR -1 261 66 28 29 0 0 chr4 189123828 189123863 -13204484 + AT_rich Low_complexity Low_complexity 1 35 0 2963 16 98 0 chr4 189123955 189124323 -13204024 + L1PA2 LINE L1 5750 6153 -2 1187 303 80 97 chr4 189124365 189125257 -13203090 - L2 LINE L2 -672 2642 1795 1425 207 33 3 chr4 189125257 189125557 -13202790 + L1PA16 LINE L1 5845 6153 -13 1187 303 80 97 chr4 189125557 189126462 -13201885 - L2 LINE L2 -1519 1795 876 23 0 0 0 chr4 189126727 189126750 -13201597 + AT_rich Low_complexity Low_complexity 1 23 0 3627 122 26 9 chr4 189127002 189127204 -13201143 - LTR19B LTR ERV1 -2 578 381 221 0 35 0 chr4 189127204 189127233 -13201114 + (TTG)n Simple_repeat Simple_repeat 1 30 0 3627 122 26 9 chr4 189127233 189127598 -13200749 - LTR19B LTR ERV1 -199 381 1 2147 130 0 0 chr4 189127621 189127914 -13200433 - AluSx SINE Alu -15 297 5 13290 162 30 5 chr4 189128427 189130761 -13197586 - Tigger1 DNA MER2_type -1 2417 25 2101 145 58 0 chr4 189131081 189131425 -13196922 + THE1B LTR MaLR 1 364 0 7893 126 49 72 chr4 189131425 189132899 -13195448 + THE1B-int LTR MaLR 1 1440 -140 866 196 48 0 chr4 189132908 189133076 -13195271 + THE1B LTR MaLR 16 191 -173 1293 219 101 19 chr4 189133407 189133772 -13194575 - MSTD LTR MaLR -1 395 1 4305 178 22 18 chr4 189133883 189134788 -13193559 + L1MA9 LINE L1 5404 6312 0 180 137 20 118 chr4 189135207 189135258 -13193089 + L3 LINE CR1 834 879 -698 2251 101 3 0 chr4 189136673 189136970 -13191377 - AluSq SINE Alu -15 298 1 1083 255 82 5 chr4 189137357 189137848 -13190499 - MLT2F LTR ERVL -79 584 2 6897 279 60 45 chr4 189137849 189139140 -13189207 - ERVL LTR ERVL -8 5756 4486 2049 125 3 26 chr4 189139140 189139453 -13188894 + AluSp SINE Alu 1 306 -7 6897 279 60 45 chr4 189139453 189140766 -13187581 - ERVL LTR ERVL -1278 4486 3194 1938 140 11 3 chr4 189140766 189141052 -13187295 + AluSx SINE Alu 1 288 -24 6897 279 60 45 chr4 189141052 189142818 -13185529 - ERVL LTR ERVL -2570 3194 1326 1254 277 125 35 chr4 189142864 189143442 -13184905 + MLT1E1 LTR MaLR 1 630 -24 427 280 34 8 chr4 189143489 189143607 -13184740 - MLT1E LTR MaLR -472 121 1 230 0 33 0 chr4 189144287 189144317 -13184030 + (TAA)n Simple_repeat Simple_repeat 1 31 0 1272 127 63 0 chr4 189145861 189146066 -13182281 + AluSg/x SINE Alu 92 309 -3 327 276 65 24 chr4 189146471 189146594 -13181753 - LTR16A1 LTR ERVL 0 457 330 230 300 56 67 chr4 189146623 189146803 -13181544 - LTR16A1 LTR ERVL -184 273 96 238 381 0 0 chr4 189147126 189147210 -13181137 + L2 LINE L2 3229 3312 -1 1780 200 24 26 chr4 189147239 189147301 -13181046 - MLT2D LTR ERVL 0 414 353 405 39 0 0 chr4 189147301 189147352 -13180995 + (GA)n Simple_repeat Simple_repeat 2 52 0 1780 200 24 26 chr4 189147352 189147704 -13180643 - MLT2D LTR ERVL -61 353 1 25 0 0 0 chr4 189148979 189149004 -13179343 + AT_rich Low_complexity Low_complexity 1 25 0 187 376 38 30 chr4 189150079 189150212 -13178135 + L2 LINE L2 3175 3308 -5 25 0 0 0 chr4 189150364 189150389 -13177958 + AT_rich Low_complexity Low_complexity 1 25 0 13856 141 22 29 chr4 189151443 189152217 -13176130 + Tigger2 DNA MER2_type 360 1138 -1580 1061 25 0 0 chr4 189152217 189152339 -13176008 + L1PA7 LINE L1 6025 6146 -8 13856 141 22 29 chr4 189152339 189153941 -13174406 + Tigger2 DNA MER2_type 1138 2718 0 1245 265 100 17 chr4 189153945 189154526 -13173821 - L1M4 LINE L1 -1315 4831 4203 30 0 0 0 chr4 189154688 189154718 -13173629 + AT_rich Low_complexity Low_complexity 1 30 0 389 139 0 33 chr4 189155213 189155335 -13173012 + (TA)n Simple_repeat Simple_repeat 1 118 0 280 227 0 0 chr4 189156034 189156100 -13172247 + L1PB4 LINE L1 6091 6156 0 1982 176 104 66 chr4 189157763 189158264 -13170083 + MLT2B1 LTR ERVL 1 520 0 541 219 188 6 chr4 189158298 189158458 -13169889 + MER5A DNA MER1_type 1 189 0 3151 150 31 18 chr4 189158482 189158704 -13169643 + L1PA16 LINE L1 5584 5801 -365 2688 23 0 0 chr4 189158704 189159010 -13169337 + AluYa5 SINE Alu 1 306 -5 3151 150 31 18 chr4 189159010 189159359 -13168988 + L1PA16 LINE L1 5801 6163 -3 22 0 0 0 chr4 189159526 189159548 -13168799 + AT_rich Low_complexity Low_complexity 1 22 0 402 216 49 0 chr4 189159913 189160015 -13168332 - MER103 DNA DNA -47 119 13 286 295 96 39 chr4 189160314 189160470 -13167877 + MIR SINE MIR 73 237 -25 32 57 0 0 chr4 189161122 189161175 -13167172 + AT_rich Low_complexity Low_complexity 1 53 0 9982 208 36 42 chr4 189161175 189163943 -13164404 - L1MA6 LINE L1 -5 7714 4932 1861 133 0 40 chr4 189163943 189164265 -13164082 - AluSc SINE Alu 0 309 1 9982 208 36 42 chr4 189164265 189165037 -13163310 - L1MA6 LINE L1 -2787 4932 4157 2374 71 7 0 chr4 189165037 189165346 -13163001 - AluY SINE Alu 0 311 1 9982 208 36 42 chr4 189165346 189166143 -13162204 - L1MA6 LINE L1 -3562 4157 3299 849 317 30 67 chr4 189166412 189166907 -13161440 - L1MA6 LINE L1 -6155 1411 495 273 348 134 0 chr4 189167421 189167585 -13160762 + MIR3 SINE MIR 16 201 -7 22 0 0 0 chr4 189168045 189168067 -13160280 + AT_rich Low_complexity Low_complexity 1 22 0 288 0 0 0 chr4 189170403 189170435 -13157912 + (CA)n Simple_repeat Simple_repeat 2 33 0 2102 107 7 23 chr4 189170450 189170758 -13157589 - AluSg SINE Alu -7 303 1 1967 108 8 0 chr4 189171443 189171711 -13156636 - AluSx SINE Alu -22 290 21 323 235 8 15 chr4 189173710 189173851 -13154496 + CT-rich Low_complexity Low_complexity 1 140 0 1985 125 3 39 chr4 189173948 189174259 -13154088 - AluSx SINE Alu -12 300 1 31 0 0 0 chr4 189174404 189174435 -13153912 + AT_rich Low_complexity Low_complexity 1 31 0 207 105 26 0 chr4 189174488 189174526 -13153821 + (TAA)n Simple_repeat Simple_repeat 3 41 0 869 145 0 0 chr4 189174856 189175008 -13153339 - L1MA7 LINE L1 -5 6286 6135 30 0 0 0 chr4 189175035 189175065 -13153282 + AT_rich Low_complexity Low_complexity 1 30 0 401 162 0 0 chr4 189175066 189175134 -13153213 - L1MA7 LINE L1 -171 6120 6053 52 50 0 0 chr4 189175167 189175247 -13153100 + AT_rich Low_complexity Low_complexity 1 80 0 211 220 0 0 chr4 189175562 189175612 -13152735 + T-rich Low_complexity Low_complexity 1 50 0 205 259 129 116 chr4 189176532 189176764 -13151583 - MIR SINE MIR -20 242 8 22 35 0 0 chr4 189176991 189177020 -13151327 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr4 189177311 189177344 -13151003 + AT_rich Low_complexity Low_complexity 1 33 0 208 350 14 28 chr4 189177648 189177791 -13150556 + MIR SINE MIR 65 205 -57 1009 227 71 24 chr4 189178145 189178440 -13149907 + MLT1C LTR MaLR 153 461 -6 1623 169 94 25 chr4 189178448 189178768 -13149579 - THE1B LTR MaLR -21 343 2 6287 116 15 11 chr4 189178769 189179711 -13148636 - THE1B-int LTR MaLR 0 1580 635 339 25 0 0 chr4 189179730 189179770 -13148577 + (CA)n Simple_repeat Simple_repeat 1 40 0 568 196 0 0 chr4 189179812 189179909 -13148438 - Tigger3(Golem) DNA MER2_type -13 3016 2920 21 36 0 0 chr4 189179913 189179941 -13148406 + AT_rich Low_complexity Low_complexity 1 28 0 446 194 0 0 chr4 189180037 189180109 -13148238 - Tigger3(Golem) DNA MER2_type -2949 80 9 21 57 0 0 chr4 189180321 189180356 -13147991 + AT_rich Low_complexity Low_complexity 1 35 0 546 315 77 25 chr4 189181992 189182227 -13146120 - L2 LINE L2 -10 3303 3057 212 332 232 24 chr4 189182525 189182867 -13145480 - L2 LINE L2 -253 3060 2622 702 288 44 18 chr4 189182889 189183163 -13145184 - L1MB8 LINE L1 0 6178 5898 504 324 156 37 chr4 189183164 189183599 -13144748 - L2 LINE L2 -710 2604 2118 263 158 70 18 chr4 189183602 189183659 -13144688 - MER45 DNA AcHobo -5 1576 1517 10063 230 34 15 chr4 189183681 189184281 -13144066 + L1MC1 LINE L1 21 608 -6005 1807 117 0 8 chr4 189184281 189184546 -13143801 + AluSx SINE Alu 50 312 0 10063 230 34 15 chr4 189184546 189190088 -13138259 + L1MC1 LINE L1 608 6607 -6 433 294 18 0 chr4 189190099 189190208 -13138139 - MER45 DNA AcHobo -66 112 2 1417 223 38 46 chr4 189190285 189190454 -13137893 + MLT1B LTR MaLR 21 190 -200 263 28 28 0 chr4 189190454 189190490 -13137857 + (CA)n Simple_repeat Simple_repeat 2 38 0 1417 223 38 46 chr4 189190490 189190693 -13137654 + MLT1B LTR MaLR 190 390 0 330 335 59 32 chr4 189190693 189190914 -13137433 - L2 LINE L2 -1307 2007 1781 1479 271 87 36 chr4 189191190 189191685 -13136662 - MER77 LTR ERV1 -13 592 73 234 326 11 22 chr4 189191784 189191876 -13136471 - MIR SINE MIR -9 253 163 302 271 21 10 chr4 189192229 189192325 -13136022 - L1ME4a LINE L1 -4 6117 6021 3955 92 9 5 chr4 189192419 189192971 -13135376 - MER41A LTR ERV1 0 554 1 13129 121 40 20 chr4 189192971 189196443 -13131904 - MER41A-int LTR ERV1 -3 5943 2186 3723 136 40 13 chr4 189196433 189197051 -13131296 - MER41A-int LTR ERV1 -5311 635 1 * 3883 98 9 0 chr4 189197137 189197686 -13130661 - MER41A LTR ERV1 0 554 1 1448 193 90 9 chr4 189197706 189198082 -13130265 - LOR1b LTR ERV1 0 461 1 232 424 44 0 chr4 189198153 189198358 -13129989 - MIR SINE MIR -21 241 28 1089 298 140 17 chr4 189200155 189200682 -13127665 + L2 LINE L2 2237 2828 -486 28 48 0 0 chr4 189200884 189200926 -13127421 + AT_rich Low_complexity Low_complexity 1 42 0 1222 275 112 16 chr4 189202766 189203310 -13125037 - L1MD1 LINE L1 -352 5818 5255 326 318 38 28 chr4 189203320 189203531 -13124816 - L1MD1 LINE L1 -939 5207 4995 965 258 96 78 chr4 189203649 189204211 -13124136 - LTR41 LTR ERVL -1 772 201 208 392 24 16 chr4 189204984 189205109 -13123238 + L2 LINE L2 2170 2295 -1019 23 0 0 0 chr4 189206399 189206422 -13121925 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr4 189206521 189206543 -13121804 + AT_rich Low_complexity Low_complexity 1 22 0 478 284 157 18 chr4 189206639 189206868 -13121479 + MIR SINE MIR 1 261 -1 1857 139 24 10 chr4 189207114 189207240 -13121107 + AluSx SINE Alu 1 124 -188 207 0 0 0 chr4 189207240 189207263 -13121084 + (CA)n Simple_repeat Simple_repeat 2 24 0 1857 139 24 10 chr4 189207263 189207431 -13120916 + AluSx SINE Alu 124 299 -13 337 105 53 11 chr4 189207465 189207560 -13120787 + (TCTA)n Simple_repeat Simple_repeat 2 100 0 2633 111 0 0 chr4 189208312 189208673 -13119674 + THE1B LTR MaLR 1 361 -3 1895 139 4 0 chr4 189209529 189209803 -13118544 + AluSx SINE Alu 2 276 -36 966 296 123 37 chr4 189210043 189211545 -13116802 + L1MEc LINE L1 195 1930 -4466 268 288 83 34 chr4 189211626 189211952 -13116395 + L1MEc LINE L1 2043 2384 -4012 1064 260 132 23 chr4 189212045 189213063 -13115284 + L1MEc LINE L1 2386 3586 -2629 266 305 116 0 chr4 189213063 189213158 -13115189 - MIR SINE MIR -155 107 2 37 39 0 0 chr4 189213533 189213584 -13114763 + AT_rich Low_complexity Low_complexity 1 51 0 2013 151 0 0 chr4 189214281 189214585 -13113762 + AluSx SINE Alu 1 304 -8 244 169 56 0 chr4 189214799 189214870 -13113477 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 28 0 0 0 chr4 189215017 189215045 -13113302 + AT_rich Low_complexity Low_complexity 1 28 0 405 269 17 0 chr4 189215046 189215165 -13113182 + LTR37B LTR ERV1 348 468 0 231 36 0 0 chr4 189215347 189215375 -13112972 + (T)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr4 189216076 189216097 -13112250 + AT_rich Low_complexity Low_complexity 1 21 0 209 316 0 0 chr4 189216414 189216471 -13111876 + (CA)n Simple_repeat Simple_repeat 2 58 0 352 60 40 0 chr4 189217482 189217532 -13110815 - MADE1 DNA Mariner -28 52 1 453 251 63 104 chr4 189218468 189218755 -13109592 + MER31-int LTR ERV1 3777 4051 -885 2210 144 0 0 chr4 189219031 189219378 -13108969 + L1PA13 LINE L1 5814 6160 -3 272 278 113 46 chr4 189219416 189219567 -13108780 + LTR37B LTR ERV1 4 164 -304 404 256 60 30 chr4 189219681 189219880 -13108467 + LTR37B LTR ERV1 201 405 -63 23 0 0 0 chr4 189219884 189219907 -13108440 + AT_rich Low_complexity Low_complexity 1 23 0 1518 171 20 17 chr4 189220757 189221050 -13107297 + AluJo SINE Alu 17 310 -2 677 305 108 48 chr4 189222206 189222642 -13105705 + MLT1J LTR MaLR 1 462 -49 2081 112 0 38 chr4 189224046 189224360 -13103987 - AluSg SINE Alu -8 302 1 3951 73 7 7 chr4 189225093 189225637 -13102710 - L1PA8 LINE L1 -2 6170 5627 593 313 61 22 chr4 189226334 189226564 -13101783 - MIR SINE MIR -10 252 14 25 0 0 0 chr4 189227030 189227055 -13101292 + AT_rich Low_complexity Low_complexity 1 25 0 241 255 41 31 chr4 189228740 189228838 -13099509 - L1ME LINE L1 -454 5667 5569 6828 142 21 1 chr4 189228961 189230065 -13098282 - Tigger1 DNA MER2_type -1292 1126 1 393 355 49 52 chr4 189230067 189230374 -13097973 - MLT1I LTR MaLR -103 306 1 1074 300 77 18 chr4 189231796 189232136 -13096211 - MLT1I LTR MaLR -1 408 49 22 35 0 0 chr4 189233648 189233677 -13094670 + AT_rich Low_complexity Low_complexity 1 29 0 2200 48 0 0 chr4 189233891 189234160 -13094187 - L1PA6 LINE L1 -202 5952 5684 1460 85 0 0 chr4 189234160 189234356 -13093991 + L1PA6 LINE L1 5950 6149 -5 378 207 58 0 chr4 189234394 189234481 -13093866 + L1ME2 LINE L1 5456 5547 -615 233 140 40 0 chr4 189234492 189234542 -13093805 - LTR66 LTR ERVL -162 448 397 228 153 0 51 chr4 189234543 189234602 -13093745 + (TA)n Simple_repeat Simple_repeat 1 56 0 968 266 100 38 chr4 189234603 189235055 -13093292 + L1ME2 LINE L1 5665 6144 -20 22 0 0 0 chr4 189235302 189235324 -13093023 + AT_rich Low_complexity Low_complexity 1 22 0 2262 121 14 14 chr4 189235591 189235954 -13092393 + L1PA10 LINE L1 5806 6168 0 2050 121 4 0 chr4 189236106 189236386 -13091961 + AluSp SINE Alu 1 281 -32 2245 130 8 51 chr4 189236665 189236834 -13091513 + THE1C LTR MaLR 1 176 -199 2168 89 7 3 chr4 189236834 189237165 -13091182 - AluY SINE Alu 0 332 1 2245 130 8 51 chr4 189237165 189237385 -13090962 + THE1C LTR MaLR 176 375 0 31 44 0 0 chr4 189237498 189237543 -13090804 + AT_rich Low_complexity Low_complexity 1 45 0 2038 180 58 17 chr4 189237560 189237977 -13090370 + Tigger2a DNA MER2_type 1 434 0 1306 101 0 37 chr4 189339357 189339545 -12988802 - AluSc SINE Alu -2 307 127 2112 109 0 39 chr4 189339761 189340072 -12988275 - AluSx SINE Alu -13 299 1 609 275 6 6 chr4 189341341 189341501 -12986846 + MLT1J LTR MaLR 1 160 -351 313 218 57 65 chr4 189341712 189341836 -12986511 + HsTC2 DNA Tc2 11 133 -1765 * 380 228 244 0 chr4 189341834 189342027 -12986320 + HsTC2 DNA Tc2 1661 1900 0 215 336 47 47 chr4 189342117 189342245 -12986102 + MIR SINE MIR 37 165 -43 28 29 0 0 chr4 189342244 189342279 -12986068 + AT_rich Low_complexity Low_complexity 1 35 0 * 353 356 107 13 chr4 189342250 189342483 -12985864 - MIR SINE MIR 0 262 8 180 0 0 0 chr4 189344253 189344273 -12984074 + (T)n Simple_repeat Simple_repeat 1 20 0 2202 104 0 28 chr4 189344846 189345164 -12983183 - AluSc SINE Alu 0 309 1 231 261 188 68 chr4 189345393 189345600 -12982747 + MIR SINE MIR 20 251 -11 289 266 0 13 chr4 189346371 189346450 -12981897 + MIR SINE MIR 68 145 -117 1414 98 5 5 chr4 189346467 189346670 -12981677 + L1PA6 LINE L1 5939 6141 -13 2422 93 0 6 chr4 189347280 189347593 -12980754 + AluSq SINE Alu 1 311 -2 274 310 40 0 chr4 189351013 189351113 -12977234 - MIR SINE MIR -33 229 126 548 95 147 11 chr4 189351166 189351261 -12977086 - FLAM_A SINE Alu -16 126 19 326 197 228 31 chr4 189353409 189353536 -12974811 + MER3 DNA MER1_type 58 209 0 243 0 0 0 chr4 189353941 189353968 -12974379 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2295 96 0 0 chr4 189353971 189354253 -12974094 - AluSx SINE Alu -30 282 1 322 240 66 33 chr4 189354676 189354797 -12973550 + L1ME LINE L1 5535 5659 -462 234 291 45 45 chr4 189355956 189356066 -12972281 - MIR SINE MIR -32 230 121 2019 154 0 6 chr4 189356110 189356422 -12971925 + AluSx SINE Alu 1 310 -2 22 56 0 0 chr4 189356442 189356478 -12971869 + AT_rich Low_complexity Low_complexity 1 36 0 1966 80 114 0 chr4 189356576 189356840 -12971507 + AluY SINE Alu 1 294 -17 224 297 55 12 chr4 189357791 189357918 -12970429 - MIR SINE MIR -63 145 45 422 99 70 0 chr4 189358784 189358855 -12969492 - MADE1 DNA Mariner -4 76 1 2053 121 7 7 chr4 189359204 189359494 -12968853 - AluSq SINE Alu -23 290 1 670 158 7 50 chr4 189359523 189359662 -12968685 + AluJo SINE Alu 2 134 -178 1643 124 137 0 chr4 189360679 189360967 -12967380 - AluSx SINE Alu 0 322 1 226 234 21 21 chr4 189361242 189361292 -12967055 + (TA)n Simple_repeat Simple_repeat 1 53 -41 2461 58 0 3 chr4 189361292 189361585 -12966762 - AluY SINE Alu -19 292 1 226 234 21 21 chr4 189361585 189361628 -12966719 + (TA)n Simple_repeat Simple_repeat 52 94 0 627 229 15 0 chr4 189361639 189361770 -12966577 + FLAM_A SINE Alu 1 133 0 2302 99 0 10 chr4 189362607 189362909 -12965438 + AluSx SINE Alu 1 299 -13 635 305 46 38 chr4 189364301 189364671 -12963676 - L1MC4a LINE L1 -1940 5868 5496 185 0 40 0 chr4 189365060 189365085 -12963262 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 12246 138 60 8 chr4 189365798 189367623 -12960724 - Tigger1 DNA MER2_type 0 2418 473 2110 108 0 34 chr4 189367623 189367920 -12960427 - AluSx SINE Alu -15 297 11 12246 138 60 8 chr4 189367920 189368123 -12960224 - Tigger1 DNA MER2_type -1945 473 284 1661 172 71 34 chr4 189368123 189368529 -12959818 + THE1C LTR MaLR 1 425 -3 1479 207 21 0 chr4 189368529 189368811 -12959536 - Tigger1 DNA MER2_type -2129 289 2 632 160 15 76 chr4 189370041 189370172 -12958175 + FAM SINE Alu 50 172 -13 282 306 24 18 chr4 189371931 189372101 -12956246 + (TGAG)n Simple_repeat Simple_repeat 4 174 0 229 290 62 6 chr4 189372173 189372335 -12956012 + (TGAG)n Simple_repeat Simple_repeat 4 174 0 202 272 33 65 chr4 189372906 189373090 -12955257 + (TGAG)n Simple_repeat Simple_repeat 1 178 0 324 274 34 34 chr4 189373121 189373296 -12955051 + (TGAG)n Simple_repeat Simple_repeat 4 178 0 188 236 0 18 chr4 189374228 189374283 -12954064 + MER5A DNA MER1_type 33 86 -103 * 259 273 41 83 chr4 189374235 189374356 -12953991 - MER5A DNA MER1_type -28 161 46 232 181 42 28 chr4 189374998 189375070 -12953277 + L1MCa LINE L1 1332 1404 -5022 286 143 0 41 chr4 189375246 189375295 -12953052 + AluJ/FLAM SINE Alu 13 59 -243 2208 98 0 7 chr4 189375973 189376299 -12952048 + AluSq SINE Alu 1 324 0 543 283 67 18 chr4 189376364 189376587 -12951760 - MIR SINE MIR -27 235 2 450 178 183 3 chr4 189378080 189378233 -12950114 + MER46A DNA MER2_type 10 236 0 304 313 99 6 chr4 189378354 189378536 -12949811 + MIR SINE MIR 8 206 -56 1952 156 3 3 chr4 189380180 189380481 -12947866 - AluSx SINE Alu -11 301 1 278 241 0 0 chr4 189381296 189381350 -12946997 + AluJ/FRAM SINE Alu 226 279 -23 2253 115 0 3 chr4 189381465 189381760 -12946587 + AluSx SINE Alu 1 294 -18 1678 215 70 2 chr4 189381779 189382193 -12946154 - L1MB3 LINE L1 -32 6151 5710 1261 257 33 77 chr4 189382294 189382851 -12945496 + L2 LINE L2 2672 3208 -105 1672 183 27 10 chr4 189382851 189383152 -12945195 - AluJo SINE Alu -6 306 1 1261 257 33 77 chr4 189383152 189383254 -12945093 + L2 LINE L2 3208 3313 0 405 181 181 0 chr4 189383288 189383382 -12944965 - MER81 DNA DNA 0 114 4 875 199 0 6 chr4 189384172 189384333 -12944014 - MLT1A2 LTR MaLR 0 374 215 288 261 45 18 chr4 189384465 189384576 -12943771 + HAL1 LINE L1 1132 1245 -1262 745 208 160 91 chr4 189384593 189384919 -12943428 + MER57A LTR ERV1 3 360 -43 2103 100 3 45 chr4 189384919 189385228 -12943119 + AluSg SINE Alu 1 296 -14 745 208 160 91 chr4 189385228 189385276 -12943071 + MER57A LTR ERV1 360 403 0 445 249 37 32 chr4 189385561 189385750 -12942597 + HAL1 LINE L1 2198 2387 -120 203 189 0 0 chr4 189385782 189385819 -12942528 + T-rich Low_complexity Low_complexity 1 37 0 215 304 0 14 chr4 189385888 189385957 -12942390 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 314 191 11 67 chr4 189386144 189386233 -12942114 + L2 LINE L2 3229 3312 -1 349 232 92 59 chr4 189386409 189386681 -12941666 + L1MEc LINE L1 2111 2350 -3865 4401 155 65 7 chr4 189387914 189388725 -12939622 - L1MB3 LINE L1 -2 6181 5324 873 183 24 0 chr4 189389323 189389487 -12938860 - L1MB3 LINE L1 -2310 3836 3669 240 316 90 26 chr4 189389933 189390088 -12938259 + MIR SINE MIR 98 262 0 1508 205 7 14 chr4 189390266 189390563 -12937784 + AluJo SINE Alu 3 297 -15 1478 176 54 4 chr4 189390563 189390842 -12937505 + AluJb SINE Alu 3 295 -17 227 250 62 0 chr4 189391519 189391599 -12936748 + MER58B DNA MER1_type 25 109 -232 1524 176 62 7 chr4 189393062 189393335 -12935012 - AluJo SINE Alu -24 288 1 542 173 0 27 chr4 189393357 189393467 -12934880 + FLAM_A SINE Alu 29 135 -7 2491 70 3 0 chr4 189393477 189393779 -12934568 + AluY SINE Alu 1 303 -8 2212 71 7 0 chr4 189394293 189394573 -12933774 + AluSp SINE Alu 24 305 -8 718 237 47 6 chr4 189395377 189395546 -12932801 + FAM SINE Alu 1 40 -9 599 167 61 35 chr4 189395747 189395861 -12932486 + AluSq/x SINE Alu 2 118 -195 2296 72 7 0 chr4 189395953 189396246 -12932101 - AluSc SINE Alu -14 295 1 1518 167 20 43 chr4 189396284 189396589 -12931758 - AluJo SINE Alu -14 298 1 1487 122 0 0 chr4 189396617 189396838 -12931509 - AluSg/x SINE Alu -1 311 91 216 307 91 0 chr4 189397809 189397897 -12930450 - MIR SINE MIR -44 218 123 1894 129 21 0 chr4 189398201 189398488 -12929859 - AluSx SINE Alu -19 293 1 23 68 0 0 chr4 189402608 189402652 -12925695 + AT_rich Low_complexity Low_complexity 1 44 0 1532 91 0 0 chr4 189402837 189403045 -12925302 + AluY SINE Alu 101 308 -3 759 217 209 4 chr4 189403423 189403667 -12924680 - MER58B DNA MER1_type -13 328 35 2754 173 96 63 chr4 189403906 189404477 -12923870 + MER44D DNA MER2_type 1 473 -2014 1707 142 3 20 chr4 189404477 189404772 -12923575 + AluSx SINE Alu 21 310 -2 2754 173 96 63 chr4 189404772 189404910 -12923437 + MER44D DNA MER2_type 473 605 0 2317 81 0 0 chr4 189404970 189405267 -12923080 + AluSc SINE Alu 7 303 -6 907 136 19 7 chr4 189405283 189405437 -12922910 + L1MB8 LINE L1 5324 5479 -705 1892 175 121 6 chr4 189405442 189405797 -12922550 + MER57A LTR ERV1 8 403 0 2387 226 52 35 chr4 189405797 189406166 -12922181 + L1MB8 LINE L1 5492 5878 -300 1602 169 13 23 chr4 189406166 189406467 -12921880 + AluJb SINE Alu 1 298 -14 2387 226 52 35 chr4 189406467 189406773 -12921574 + L1MB8 LINE L1 5878 6178 0 855 180 12 6 chr4 189406787 189406948 -12921399 + FRAM SINE Alu 5 166 0 512 178 22 0 chr4 189408027 189408117 -12920230 + MER63 DNA MER1_type 696 787 -273 3463 174 72 11 chr4 189408121 189408852 -12919495 + L1MB5 LINE L1 5382 6157 -17 1957 184 130 16 chr4 189408846 189409331 -12919016 + L1MC2 LINE L1 5797 6336 -8 * 481 271 7 2 chr4 189409335 189409489 -12918858 + L1MCa LINE L1 1743 1955 -4471 2276 68 3 3 chr4 189409762 189410056 -12918291 + AluY SINE Alu 1 294 -17 29 0 0 0 chr4 189410056 189410085 -12918262 + AT_rich Low_complexity Low_complexity 1 29 0 228 183 268 12 chr4 189410754 189410836 -12917511 + MIR SINE MIR 123 225 -37 409 216 121 0 chr4 189411508 189411624 -12916723 - MER104 DNA Tc2 -9 171 42 633 238 77 17 chr4 189411688 189411869 -12916478 + MLT1D LTR MaLR 1 192 -313 1013 160 0 48 chr4 189411870 189412057 -12916290 + AluJo SINE Alu 85 262 -50 743 217 97 14 chr4 189412166 189412383 -12915964 + MLT1D LTR MaLR 250 484 -21 1758 135 74 84 chr4 189412800 189413230 -12915117 + MER4B LTR ERV1 1 426 -184 894 149 169 5 chr4 189413340 189413535 -12914812 + MER4B LTR ERV1 384 610 0 180 278 100 11 chr4 189414477 189414567 -12913780 - MIR3 SINE MIR -53 155 58 231 231 123 54 chr4 189415362 189415492 -12912855 + L1ME4a LINE L1 5982 6120 -1 1171 135 67 25 chr4 189416287 189416569 -12911778 + L1MA8 LINE L1 5995 6288 -3 1613 163 20 17 chr4 189416576 189416877 -12911470 + AluJb SINE Alu 1 302 -10 304 282 0 14 chr4 189416976 189417047 -12911300 + L2 LINE L2 3186 3255 -17 1004 151 100 161 chr4 189418551 189418862 -12909485 + AluJo SINE Alu 1 292 -10 1913 125 3 10 chr4 189419082 189419378 -12908969 + AluSx SINE Alu 1 294 -18 1574 79 0 0 chr4 189419509 189419712 -12908635 - AluY SINE Alu -108 203 1 430 149 23 11 chr4 189419724 189419811 -12908536 - L1MB8 LINE L1 0 6178 6091 557 180 0 79 chr4 189420956 189421095 -12907252 + FLAM_A SINE Alu 2 129 -4 2138 95 0 0 chr4 189421095 189421415 -12906932 + AluSx SINE Alu 1 320 0 726 220 0 0 chr4 189421987 189422119 -12906228 + FLAM_C SINE Alu 1 132 -1 2411 70 0 0 chr4 189422625 189422924 -12905423 + AluSc SINE Alu 1 299 -10 2329 90 0 0 chr4 189422970 189423280 -12905067 + AluSg SINE Alu 1 310 0 40 49 0 0 chr4 189425230 189425291 -12903056 + GC_rich Low_complexity Low_complexity 1 61 0 752 242 39 9 chr4 189425939 189426170 -12902177 - MER65A LTR ERV1 -207 238 1 2095 62 0 11 chr4 189427051 189427327 -12901020 + AluSc SINE Alu 23 295 -14 3427 238 93 63 chr4 189427842 189428956 -12899391 + L1MC4 LINE L1 6465 7627 -415 1471 164 64 18 chr4 189428956 189429236 -12899111 + AluJo SINE Alu 1 293 -19 3427 238 93 63 chr4 189429236 189429468 -12898879 + L1MC4 LINE L1 7627 7851 -191 998 189 52 89 chr4 189429468 189429524 -12898823 + MLT1A1 LTR MaLR 1 58 -370 1774 153 14 3 chr4 189429524 189429819 -12898528 + AluJo SINE Alu 1 298 -14 998 189 52 89 chr4 189429819 189430016 -12898331 + MLT1A1 LTR MaLR 58 261 -167 2476 53 0 0 chr4 189430016 189430315 -12898032 - AluY SINE Alu -11 300 2 998 189 52 89 chr4 189430315 189430420 -12897927 + MLT1A1 LTR MaLR 261 406 -22 3843 199 34 39 chr4 189430420 189431378 -12896969 + LTR13 LTR ERVK 1 954 0 998 189 52 89 chr4 189431378 189431401 -12896946 + MLT1A1 LTR MaLR 406 428 0 331 217 51 116 chr4 189431415 189431553 -12896794 + L1MC4 LINE L1 7861 7989 -53 646 116 0 103 chr4 189431560 189431604 -12896743 - FLAM_C SINE Alu -169 143 96 2023 130 3 0 chr4 189431604 189431904 -12896443 + AluSq SINE Alu 1 301 -12 646 116 0 103 chr4 189431904 189432005 -12896342 - FLAM_C SINE Alu -216 96 13 2612 146 37 0 chr4 189432285 189432695 -12895652 + MSTB LTR MaLR 2 426 0 1124 216 237 27 chr4 189433099 189433512 -12894835 - MLT1E1 LTR MaLR -113 541 42 22 0 0 0 chr4 189433619 189433641 -12894706 + AT_rich Low_complexity Low_complexity 1 22 0 2181 154 49 5 chr4 189433739 189434147 -12894200 - MSTA LTR MaLR -2 426 1 660 307 70 14 chr4 189434147 189434354 -12893993 - MIR SINE MIR -7 255 34 2388 48 0 3 chr4 189435319 189435613 -12892734 + AluY SINE Alu 1 293 -18 1035 192 46 50 chr4 189435613 189435894 -12892453 - AluJo SINE Alu -30 282 3 417 133 256 0 chr4 189435955 189436045 -12892302 + AluJo SINE Alu 25 137 -175 1901 115 3 10 chr4 189436066 189436354 -12891993 + AluSg SINE Alu 1 286 -24 576 0 0 0 chr4 189436940 189437004 -12891343 + (TA)n Simple_repeat Simple_repeat 2 65 0 1906 122 0 21 chr4 189437007 189437294 -12891053 - AluSx SINE Alu -31 281 1 2196 103 0 0 chr4 189437807 189438108 -12890239 - AluSg SINE Alu -9 301 1 331 305 34 8 chr4 189438185 189438303 -12890044 + MIR3 SINE MIR 13 133 -75 1909 144 3 13 chr4 189438873 189439043 -12889304 - AluSx SINE Alu -9 303 136 2049 111 13 10 chr4 189439043 189439341 -12889006 - AluSq SINE Alu -14 299 1 1909 144 3 13 chr4 189439341 189439476 -12888871 - AluSx SINE Alu -176 136 1 855 193 85 148 chr4 189439509 189440002 -12888345 - MER4C LTR ERV1 -3 462 1 1636 196 55 37 chr4 189440071 189440403 -12887944 - LTR34 LTR ERV1 -4 695 354 2269 90 7 0 chr4 189440403 189440702 -12887645 - AluSp SINE Alu -12 301 1 1636 196 55 37 chr4 189440702 189440750 -12887597 - LTR34 LTR ERV1 -345 354 308 665 87 0 11 chr4 189440750 189440842 -12887505 + MER4B LTR ERV1 1 91 -519 19345 104 59 50 chr4 189440842 189441759 -12886588 + MER4B-int LTR ERV1 984 1891 -4867 1968 154 3 0 chr4 189441759 189442070 -12886277 + AluSx SINE Alu 1 312 0 19345 104 59 50 chr4 189442070 189444424 -12883923 + MER4B-int LTR ERV1 1891 4223 -2535 2520 58 3 0 chr4 189444424 189444717 -12883630 + AluY SINE Alu 1 294 -17 19345 104 59 50 chr4 189444717 189445174 -12883173 + MER4B-int LTR ERV1 4223 4674 -2084 5750 144 139 28 chr4 189445174 189446324 -12882023 - MER52C LTR ERV1 0 1278 1 19345 104 59 50 chr4 189446324 189447032 -12881315 + MER4B-int LTR ERV1 4674 5474 -1284 1827 153 49 11 chr4 189447032 189447319 -12881028 + AluSq SINE Alu 1 298 -15 19345 104 59 50 chr4 189447319 189447912 -12880435 + MER4B-int LTR ERV1 5474 6060 -698 1515 116 22 9 chr4 189447912 189448136 -12880211 - AluSq SINE Alu -17 296 70 761 198 0 0 chr4 189448240 189448366 -12879981 - AluJb SINE Alu -50 262 137 373 267 167 11 chr4 189448410 189448680 -12879667 - HAL1 LINE L1 -857 1650 1339 1996 114 59 0 chr4 189448719 189448991 -12879356 - AluSg SINE Alu -22 288 1 2104 126 0 13 chr4 189449263 189449565 -12878782 - AluSx SINE Alu -14 298 1 1872 191 170 9 chr4 189450158 189450698 -12877649 + MER67B LTR ERV1 2 628 -33 507 262 83 12 chr4 189451482 189451650 -12876697 - LTR56 LTR ERV1 -116 329 150 1499 166 32 36 chr4 189451650 189451885 -12876462 + AluJo SINE Alu 1 236 -76 5382 67 121 16 chr4 189451885 189452631 -12875716 - LTR12 LTR ERV1 0 826 3 1499 166 32 36 chr4 189452631 189452673 -12875674 + AluJo SINE Alu 236 277 -35 2303 100 0 3 chr4 189453377 189453678 -12874669 + AluSg SINE Alu 1 300 -10 2341 125 85 3 chr4 189453747 189454123 -12874224 + MER4B-int LTR ERV1 6351 6757 -1 1512 109 73 4 chr4 189454123 189454370 -12873977 + MER4B LTR ERV1 1 264 -346 227 135 0 0 chr4 189454392 189454429 -12873918 - LTR34 LTR ERV1 -399 300 264 3156 141 57 93 chr4 189454453 189454574 -12873773 - LTR8 LTR ERV1 0 691 567 2328 92 7 0 chr4 189454574 189454869 -12873478 - AluSp SINE Alu -14 299 3 3156 141 57 93 chr4 189454869 189455292 -12873055 - LTR8 LTR ERV1 -124 567 177 2256 50 32 0 chr4 189455292 189455573 -12872774 + L1PA7 LINE L1 5865 6154 0 3156 141 57 93 chr4 189455573 189455744 -12872603 - LTR8 LTR ERV1 -514 177 1 481 189 58 175 chr4 189455744 189455962 -12872385 - LTR34 LTR ERV1 -442 257 80 5045 79 16 26 chr4 189455962 189456660 -12871687 - LTR8 LTR ERV1 0 691 1 481 189 58 175 chr4 189456660 189456731 -12871616 - LTR34 LTR ERV1 -619 80 2 2511 64 0 16 chr4 189456853 189457164 -12871183 - AluY SINE Alu -5 306 1 689 263 96 4 chr4 189458056 189458296 -12870051 + MIR SINE MIR 1 262 0 1708 140 8 4 chr4 189458453 189458710 -12869637 - AluSc SINE Alu -8 301 44 2055 110 13 10 chr4 189458710 189459008 -12869339 - AluSp SINE Alu -13 300 1 2136 128 0 3 chr4 189459904 189460201 -12868146 - AluSx SINE Alu -16 296 1 277 252 0 32 chr4 189461198 189461321 -12867026 + C-rich Low_complexity Low_complexity 3 121 0 726 201 5 55 chr4 189461325 189461524 -12866823 + LOR1a LTR ERV1 309 497 0 1173 246 36 0 chr4 189461529 189461863 -12866484 - L1M4 LINE L1 -1537 6028 5683 962 86 16 0 chr4 189462129 189462257 -12866090 + AluSg/x SINE Alu 175 304 -8 337 300 29 0 chr4 189462714 189462854 -12865493 - L1MEc LINE L1 -4736 1660 1517 1946 116 25 17 chr4 189462856 189463381 -12864966 + LTR10E LTR ERV1 1 602 -31 198 257 119 40 chr4 189464642 189464743 -12863604 + L3b LINE CR1 1273 1381 -202 292 237 59 0 chr4 189466336 189466454 -12861893 + G-rich Low_complexity Low_complexity 2 126 0 21 0 0 0 chr4 189467141 189467162 -12861185 + AT_rich Low_complexity Low_complexity 1 21 0 1247 181 63 41 chr4 189467200 189467470 -12860877 + AluJo SINE Alu 1 276 -36 2450 65 0 13 chr4 189467504 189467810 -12860537 + AluY SINE Alu 1 302 -9 2236 98 7 0 chr4 189468786 189469071 -12859276 + AluSx SINE Alu 10 296 -16 5794 110 9 5 chr4 189469548 189470500 -12857847 - L1PA15 LINE L1 -4 6161 5192 901 161 61 0 chr4 189470516 189470696 -12857651 - L1PA15 LINE L1 -1034 5112 4922 1747 112 22 29 chr4 189470709 189470987 -12857360 - MER1B DNA MER1_type 0 339 64 5149 206 45 30 chr4 189471777 189472521 -12855826 - L1MEc LINE L1 -2762 4803 4072 2293 147 0 9 chr4 189472521 189472861 -12855486 + MER1B DNA MER1_type 1 337 0 5149 206 45 30 chr4 189472861 189473534 -12854813 - L1MEc LINE L1 -3493 4072 3342 1504 178 13 63 chr4 189473534 189473849 -12854498 - AluJo SINE Alu -13 299 1 5149 206 45 30 chr4 189473849 189474215 -12854132 - L1MEc LINE L1 -4223 3342 2983 1830 146 8 0 chr4 189474215 189474502 -12853845 - AluSx SINE Alu 0 312 20 3367 149 40 54 chr4 189478066 189478542 -12849805 - MER4D LTR ERV1 -86 817 353 2116 155 3 0 chr4 189478542 189478852 -12849495 + AluSx SINE Alu 1 311 -1 3367 149 40 54 chr4 189478852 189479059 -12849288 - MER4D LTR ERV1 -550 353 144 1436 143 11 60 chr4 189479258 189479523 -12848824 + AluJb SINE Alu 61 312 0 1850 165 10 0 chr4 189479619 189479910 -12848437 - AluSx SINE Alu -18 294 1 401 246 44 52 chr4 189480110 189480362 -12847985 - L1MEc LINE L1 -5318 2428 2179 1555 233 36 17 chr4 189480972 189481393 -12846954 + LTR40c LTR ERVL 37 465 0 536 294 112 59 chr4 189481560 189482067 -12846280 + MLT1H LTR MaLR 15 548 -1 422 255 93 19 chr4 189482084 189482245 -12846102 + MER104 DNA MER2_type 5 177 -3 204 193 48 96 chr4 189483228 189483311 -12845036 + L2 LINE L2 3217 3295 -18 185 296 19 19 chr4 189484055 189484109 -12844238 - MIR SINE MIR -64 144 91 694 130 172 2 chr4 189484249 189484381 -12843966 + MSTA LTR MaLR 1 144 -231 475 129 32 11 chr4 189484381 189484474 -12843873 - THE1C LTR MaLR 0 375 281 464 286 6 25 chr4 189484536 189484697 -12843650 - L1ME LINE L1 -394 5776 5619 849 220 151 62 chr4 189484772 189484886 -12843461 - AluJo SINE Alu -30 282 180 2016 140 0 7 chr4 189484886 189485186 -12843161 - AluSx SINE Alu -14 298 1 849 220 151 62 chr4 189485186 189485330 -12843017 - AluJo SINE Alu -132 180 1 1175 133 0 0 chr4 189485337 189485502 -12842845 - AluSg/x SINE Alu -13 297 133 736 320 126 11 chr4 189485697 189486156 -12842191 + L2 LINE L2 2028 2539 -775 245 324 0 14 chr4 189486171 189486220 -12842127 + L2 LINE L2 3197 3246 -26 2271 119 3 0 chr4 189486220 189486522 -12841825 - AluSg SINE Alu -7 303 1 245 324 0 14 chr4 189486522 189486546 -12841801 + L2 LINE L2 3246 3269 -3 2286 137 114 5 chr4 189487140 189487526 -12840821 - MSTA LTR MaLR 0 428 1 378 252 74 0 chr4 189487993 189488128 -12840219 - L1ME4a LINE L1 -3 6118 5974 354 214 61 10 chr4 189488512 189488610 -12839737 - LTR56 LTR ERV1 -342 103 1 1656 179 17 7 chr4 189488860 189489162 -12839185 - AluJo SINE Alu -7 305 1 2274 101 0 0 chr4 189490959 189491255 -12837092 + AluSx SINE Alu 1 296 -16 875 113 324 0 chr4 189492266 189492451 -12835896 + AluJb SINE Alu 51 295 -17 218 366 130 0 chr4 189493154 189493285 -12835062 + MIR SINE MIR 97 244 -18 316 235 101 47 chr4 189493335 189493484 -12834863 - MLT1G LTR MaLR -45 545 389 246 200 36 0 chr4 189493835 189493890 -12834457 - MLT1G1 LTR MaLR -538 57 1 23 33 0 0 chr4 189494681 189494711 -12833636 + AT_rich Low_complexity Low_complexity 1 30 0 1523 192 3 63 chr4 189494711 189495029 -12833318 - AluJo SINE Alu -13 299 1 664 136 12 120 chr4 189495033 189495206 -12833141 - L1PB4 LINE L1 -1 6165 6016 200 285 44 22 chr4 189495673 189495810 -12832537 + (CAGAGA)n Simple_repeat Simple_repeat 3 142 0 805 203 25 0 chr4 189496032 189496190 -12832157 - AluJb SINE Alu -15 297 136 1880 152 0 0 chr4 189496390 189496687 -12831660 + AluJo SINE Alu 1 297 -15 2088 96 27 7 chr4 189496707 189496999 -12831348 + AluSx SINE Alu 1 298 -14 1829 108 48 37 chr4 189497071 189497366 -12830981 + AluSx SINE Alu 1 298 -14 479 280 6 30 chr4 189497765 189497933 -12830414 - L1ME LINE L1 -394 5776 5613 856 221 151 62 chr4 189498001 189498115 -12830232 - AluJo SINE Alu -30 282 180 1898 137 0 7 chr4 189498115 189498415 -12829932 - AluSx SINE Alu -14 298 1 856 221 151 62 chr4 189498415 189498558 -12829789 - AluJo SINE Alu -132 180 2 1089 134 0 0 chr4 189498566 189498730 -12829617 - AluSg/x SINE Alu -14 298 135 710 320 126 11 chr4 189498925 189499384 -12828963 + L2 LINE L2 2028 2539 -775 243 324 0 14 chr4 189499399 189499448 -12828899 + L2 LINE L2 3197 3246 -26 2085 123 3 0 chr4 189499448 189499749 -12828598 - AluSg SINE Alu -8 302 1 243 324 0 14 chr4 189499749 189499773 -12828574 + L2 LINE L2 3246 3269 -3 2271 135 114 5 chr4 189500367 189500753 -12827594 - MSTA LTR MaLR 0 428 1 390 258 74 6 chr4 189501220 189501383 -12826964 - L1ME4a LINE L1 -3 6118 5945 445 270 163 69 chr4 189501704 189502023 -12826324 - L1ME4a LINE L1 -370 5751 5403 331 143 0 0 chr4 189502055 189502111 -12826236 - Alu SINE Alu 0 302 247 815 173 7 0 chr4 189503665 189503804 -12824543 + MER2 DNA MER2_type 1 140 -205 1815 166 55 0 chr4 189504282 189504608 -12823739 + MER2 DNA MER2_type 1 344 0 1963 101 0 73 chr4 189505229 189505545 -12822802 + AluSx SINE Alu 1 293 -19 2324 65 0 0 chr4 189506405 189506727 -12821620 - AluY SINE Alu 0 311 1 522 224 48 41 chr4 189507133 189507280 -12821067 - L2 LINE L2 -25 3288 3141 1426 209 3 0 chr4 189507281 189507563 -12820784 + AluJo SINE Alu 6 288 -24 2099 132 0 10 chr4 189507565 189507876 -12820471 + AluSx SINE Alu 1 308 -4 350 185 15 0 chr4 189508070 189508135 -12820212 + MER94 DNA DNA 44 109 -25 1581 138 48 48 chr4 189508180 189508492 -12819855 - AluSx SINE Alu 0 312 1 2637 26 0 3 chr4 189508630 189508938 -12819409 - AluY SINE Alu -4 307 1 2253 71 0 0 chr4 189509021 189509318 -12819029 - AluSx SINE Alu -14 298 2 36 23 0 0 chr4 189509818 189509861 -12818486 + AT_rich Low_complexity Low_complexity 1 43 0 2192 108 0 0 chr4 189510320 189510616 -12817731 - AluSx SINE Alu -16 296 1 59 38 0 0 chr4 189510982 189511062 -12817285 + AT_rich Low_complexity Low_complexity 1 80 0 2101 100 3 10 chr4 189511107 189511408 -12816939 - AluSx SINE Alu -13 299 1 1810 134 11 0 chr4 189511590 189511873 -12816474 - AluJo SINE Alu -24 288 3 321 217 11 43 chr4 189512108 189512200 -12816147 - LTR16C LTR ERVL -2 489 401 1030 277 36 6 chr4 189512200 189512532 -12815815 + L1M4 LINE L1 2237 2578 -3568 587 238 81 16 chr4 189512535 189512720 -12815627 + L1M4 LINE L1 3362 3558 -2588 2366 73 3 0 chr4 189512994 189513297 -12815050 - AluSg SINE Alu -6 304 1 183 80 0 0 chr4 189513435 189513460 -12814887 + (TA)n Simple_repeat Simple_repeat 2 26 0 2119 99 7 0 chr4 189513462 189513744 -12814603 - AluSx SINE Alu -28 284 1 270 0 0 0 chr4 189514011 189514041 -12814306 + (CA)n Simple_repeat Simple_repeat 2 31 0 2315 92 0 0 chr4 189514049 189514354 -12813993 - AluY SINE Alu -6 305 1 30 45 0 0 chr4 189514568 189514612 -12813735 + AT_rich Low_complexity Low_complexity 1 44 0 332 197 0 0 chr4 189514612 189514678 -12813669 + FLAM SINE Alu 68 133 0 1839 123 3 10 chr4 189514696 189514988 -12813359 + AluSx SINE Alu 1 290 -22 335 160 0 0 chr4 189515088 189515138 -12813209 - Alu SINE Alu -253 50 1 * 637 120 31 109 chr4 189515138 189515309 -12813038 - Charlie5 DNA MER1_type -72 2540 2385 219 246 62 31 chr4 189515444 189515509 -12812838 - L2 LINE L2 -1 3312 3246 1476 155 90 4 chr4 189515587 189515864 -12812483 - AluSq SINE Alu -12 301 1 479 328 7 12 chr4 189515958 189516153 -12812194 - MIR SINE MIR -55 207 13 265 314 102 7 chr4 189516951 189517088 -12811259 + L2 LINE L2 3122 3271 -1 938 186 0 0 chr4 189517351 189517528 -12810819 - FRAM SINE Alu -1 175 1 2244 158 7 43 chr4 189517528 189517584 -12810763 - L1MC1 LINE L1 -9 6604 6548 2128 95 27 0 chr4 189517584 189517878 -12810469 + AluSq SINE Alu 1 302 -11 2244 158 7 43 chr4 189517878 189518239 -12810108 - L1MC1 LINE L1 -65 6548 6202 1354 161 39 0 chr4 189518239 189518469 -12809878 - Tigger5 DNA MER2_type 0 2323 2085 456 191 22 0 chr4 189518463 189518552 -12809795 - Tigger5 DNA MER2_type -2089 234 144 * 241 140 0 159 chr4 189518689 189518903 -12809444 + (CATAT)n Simple_repeat Simple_repeat 1 180 0 521 219 66 36 chr4 189518938 189519075 -12809272 - Tigger5 DNA MER2_type -2182 141 1 10004 191 87 29 chr4 189519075 189521106 -12807241 - L1MC1 LINE L1 -410 6203 4290 1741 178 0 6 chr4 189521106 189521420 -12806927 - AluJb SINE Alu 0 312 1 10004 191 87 29 chr4 189521420 189521629 -12806718 - L1MC1 LINE L1 -2323 4290 4094 1967 121 0 48 chr4 189521629 189521944 -12806403 - AluSx SINE Alu -10 302 3 10004 191 87 29 chr4 189521944 189523658 -12804689 - L1MC1 LINE L1 -2519 4094 2480 1522 174 128 10 chr4 189523658 189523963 -12804384 + MER2 DNA MER2_type 3 343 -1 10004 191 87 29 chr4 189523963 189524181 -12804166 - L1MC1 LINE L1 -4133 2480 2276 2824 56 6 8 chr4 189524181 189524537 -12803810 + THE1A LTR MaLR 1 355 0 10004 191 87 29 chr4 189524537 189524761 -12803586 - L1MC1 LINE L1 -4337 2276 2066 2263 110 0 0 chr4 189524761 189525069 -12803278 - AluSq SINE Alu -5 308 1 10004 191 87 29 chr4 189525069 189525768 -12802579 - L1MC1 LINE L1 -4547 2066 808 1434 171 0 4 chr4 189525769 189526015 -12802332 - AluSx SINE Alu -63 249 5 726 227 46 59 chr4 189528710 189528948 -12799399 + MIR SINE MIR 7 241 -21 338 200 74 11 chr4 189529376 189529471 -12798876 - MIR SINE MIR -75 133 33 2025 139 0 0 chr4 189529778 189530088 -12798259 - AluSx SINE Alu -2 310 1 2251 96 3 0 chr4 189531102 189531405 -12796942 - AluSp SINE Alu -9 304 1 214 274 0 55 chr4 189531437 189531510 -12796837 + L2 LINE L2 3245 3313 0 742 146 180 156 chr4 189531530 189531825 -12796522 + AluJb SINE Alu 1 302 0 231 36 0 0 chr4 189531918 189531946 -12796401 + (T)n Simple_repeat Simple_repeat 1 28 0 188 91 0 106 chr4 189532180 189532246 -12796101 + (TTTCC)n Simple_repeat Simple_repeat 1 59 0 1495 179 10 29 chr4 189532247 189532560 -12795787 - AluJb SINE Alu -5 307 1 29 28 0 0 chr4 189532656 189532692 -12795655 + AT_rich Low_complexity Low_complexity 1 36 0 234 251 82 63 chr4 189533010 189533217 -12795130 + L1ME LINE L1 5121 5331 -815 475 270 80 0 chr4 189533233 189533396 -12794951 - LTR33A LTR ERVL -12 511 336 340 244 179 87 chr4 189533544 189533696 -12794651 + L1ME LINE L1 5325 5506 -615 2360 88 0 0 chr4 189533696 189534003 -12794344 + AluSx SINE Alu 1 307 -5 340 244 179 87 chr4 189534003 189534079 -12794268 + L1ME LINE L1 5506 5574 -547 310 313 52 62 chr4 189534207 189534399 -12793948 + L1ME LINE L1 21 210 -5860 282 237 281 9 chr4 189534669 189534783 -12793564 - L2 LINE L2 0 3313 3169 270 303 57 41 chr4 189534787 189534909 -12793438 - L2 LINE L2 -1170 2144 2021 776 131 16 0 chr4 189536625 189536747 -12791600 - AluSg/x SINE Alu -13 297 174 534 93 0 111 chr4 189537094 189537202 -12791145 - FRAM SINE Alu -12 164 69 184 313 121 10 chr4 189537216 189537315 -12791032 + MIR SINE MIR 57 166 -96 2183 99 0 3 chr4 189538365 189538658 -12789689 - AluSx SINE Alu -20 292 1 261 262 97 68 chr4 189539330 189539578 -12788769 - L1MC5 LINE L1 -35 7926 7672 4906 182 78 18 chr4 189540505 189541304 -12787043 - L1MC1 LINE L1 -5 6328 5440 2153 120 3 0 chr4 189541304 189541613 -12786734 - AluSx SINE Alu -2 310 1 4906 182 78 18 chr4 189541613 189541887 -12786460 - L1MC1 LINE L1 -893 5440 5184 289 374 54 23 chr4 189542079 189542469 -12785878 - L1MC4a LINE L1 -1847 5961 5560 181 231 77 51 chr4 189542563 189542641 -12785706 + L2 LINE L2 2776 2855 -459 2020 117 10 0 chr4 189542642 189542940 -12785407 - AluSx SINE Alu -7 305 5 495 108 0 0 chr4 189542941 189543015 -12785332 - AluS SINE Alu -238 75 2 309 86 0 0 chr4 189543017 189543064 -12785283 - Alu SINE Alu -260 42 1 615 304 44 22 chr4 189543733 189543960 -12784387 - MIR SINE MIR -25 237 6 418 228 18 23 chr4 189544589 189544760 -12783587 + (CATA)n Simple_repeat Simple_repeat 1 170 0 262 217 0 33 chr4 189544815 189544907 -12783440 + (CATA)n Simple_repeat Simple_repeat 4 92 0 251 164 0 18 chr4 189544907 189544962 -12783385 - MER4-int LTR ERV1 -5433 1165 1112 1357 221 41 0 chr4 189545347 189545796 -12782551 - MLT2B1 LTR ERVL 0 520 2 1582 160 4 23 chr4 189547842 189548105 -12780242 + AluJo SINE Alu 39 296 -16 407 300 35 35 chr4 189552428 189552628 -12775719 - L2 LINE L2 -2 3311 3112 206 246 70 0 chr4 189554804 189554861 -12773486 - MIR SINE MIR -82 180 120 1992 142 0 39 chr4 189557105 189557414 -12770933 + AluJo SINE Alu 1 297 -15 2351 105 3 0 chr4 189559212 189559518 -12768829 - AluSq SINE Alu -6 307 1 494 278 119 32 chr4 189560432 189560684 -12767663 - LTR16A LTR ERVL -14 436 163 246 356 126 25 chr4 189561126 189561715 -12766632 - L2 LINE L2 -476 2838 2191 359 317 53 61 chr4 189561864 189562126 -12766221 + L1MEd LINE L1 123 382 -5737 413 272 80 19 chr4 189562196 189562598 -12765749 + L1MEd LINE L1 535 1064 -5055 1488 120 0 40 chr4 189563184 189563409 -12764938 - AluJo SINE Alu -10 302 87 581 229 0 0 chr4 189564267 189564389 -12763958 + MER33 DNA MER1_type 29 150 -174 1136 69 0 0 chr4 189564389 189564520 -12763827 + AluSp SINE Alu 1 131 -182 1853 142 35 0 chr4 189564525 189564814 -12763533 + AluSp SINE Alu 3 301 -12 5751 176 65 16 chr4 189564877 189565951 -12762396 + L1M3f LINE L1 51 1071 -4359 2345 72 21 0 chr4 189565951 189566241 -12762106 + AluY SINE Alu 2 297 -14 1385 176 101 7 chr4 189566248 189566526 -12761821 + AluJb SINE Alu 1 304 -8 5751 176 65 16 chr4 189566526 189566690 -12761657 + L1M3f LINE L1 1076 1365 -4065 697 266 93 39 chr4 189568915 189569249 -12759098 - MLT1A1 LTR MaLR -13 352 1 881 112 0 0 chr4 189572301 189572426 -12755921 - AluSp/q SINE Alu -4 309 185 213 298 85 43 chr4 189574419 189574513 -12753834 - L2 LINE L2 0 3313 3216 1237 91 0 0 chr4 189574799 189574974 -12753373 - L1MA2 LINE L1 0 6304 6130 852 167 0 0 chr4 189574974 189575090 -12753257 - FLAM_C SINE Alu -193 119 1 192 309 27 9 chr4 189575526 189575636 -12752711 + MIR SINE MIR 34 145 -117 5190 139 56 5 chr4 189577282 189578174 -12750173 - Tigger1 DNA MER2_type 0 2418 1481 444 306 43 5 chr4 189578232 189578418 -12749929 - L1MC/D LINE L1 -2081 5727 5535 441 346 54 27 chr4 189578480 189578740 -12749607 - L1MC/D LINE L1 -773 5373 5107 198 261 72 29 chr4 189580784 189580853 -12747494 + L2 LINE L2 3196 3267 -5 359 250 125 40 chr4 189581544 189581696 -12746651 + L1ME4a LINE L1 5956 6120 -1 1830 172 0 10 chr4 189581702 189581993 -12746354 - AluSx SINE Alu -22 290 3 2249 139 3 0 chr4 189582063 189582416 -12745931 - THE1B LTR MaLR 0 364 11 275 210 40 30 chr4 189582552 189582652 -12745695 + (CATATA)n Simple_repeat Simple_repeat 1 101 0 1076 152 41 25 chr4 189582665 189582862 -12745485 - AluJb SINE Alu -87 225 26 914 215 28 42 chr4 189585048 189585336 -12743011 + L1MCc LINE L1 1226 1509 -4914 2697 175 14 37 chr4 189586026 189586597 -12741750 - L1M3 LINE L1 -363 5817 5260 2590 187 53 4 chr4 189589352 189589875 -12738472 + MER41D LTR ERV1 1 549 -8 1964 126 29 79 chr4 189590891 189591272 -12737075 - THE1B LTR MaLR 0 364 3 11430 90 10 3 chr4 189591274 189592842 -12735505 - THE1B-int LTR MaLR 0 1580 2 2119 126 33 38 chr4 189592843 189593208 -12735139 - THE1B LTR MaLR 0 364 2 332 284 0 0 chr4 189593272 189593353 -12734994 + L2 LINE L2 3180 3260 -12 785 179 7 0 chr4 189594804 189595091 -12733256 + (TCCA)n Simple_repeat Simple_repeat 1 289 0 545 212 6 0 chr4 189595105 189595284 -12733063 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 182 231 15 0 chr4 189595299 189595364 -12732983 + (TCCA)n Simple_repeat Simple_repeat 4 69 0 849 145 14 0 chr4 189595379 189595668 -12732679 + (TCCA)n Simple_repeat Simple_repeat 1 293 0 1097 123 8 7 chr4 189595693 189596230 -12732117 + (TCCA)n Simple_repeat Simple_repeat 1 717 0 595 50 0 0 chr4 189796237 189796317 -12532030 + AluY SINE Alu 215 294 -17 1459 191 0 35 chr4 189796686 189796968 -12531379 + AluJo SINE Alu 3 274 -38 180 0 0 0 chr4 189796974 189796994 -12531353 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 612 211 0 0 chr4 189797037 189797151 -12531196 + FLAM_C SINE Alu 2 115 -18 8484 55 6 2 chr4 189797414 189798512 -12529835 + L1P LINE L1 4191 5293 -853 637 232 21 0 chr4 189798654 189798796 -12529551 + MLT1E3 LTR MaLR 480 624 0 35 71 0 0 chr4 189798996 189799066 -12529281 + AT_rich Low_complexity Low_complexity 1 70 0 360 77 0 0 chr4 189799629 189799681 -12528666 + (TC)n Simple_repeat Simple_repeat 1 52 0 183 80 0 0 chr4 189799681 189799706 -12528641 + (TA)n Simple_repeat Simple_repeat 1 25 0 1888 143 0 13 chr4 189799709 189800010 -12528337 - AluSx SINE Alu -11 301 5 927 172 25 13 chr4 189801949 189802106 -12526241 - AluSx SINE Alu -153 159 1 365 356 17 48 chr4 189802116 189802346 -12526001 + L1M4c LINE L1 1535 1757 -4627 201 74 0 0 chr4 189802391 189802418 -12525929 + (A)n Simple_repeat Simple_repeat 1 27 0 437 290 62 37 chr4 189802573 189803083 -12525264 + L1M4c LINE L1 2335 2824 -3558 462 302 48 4 chr4 189803154 189803406 -12524941 + L1M4c LINE L1 3131 3393 -2989 272 224 0 45 chr4 189803507 189803574 -12524773 + MLT1H LTR MaLR 111 174 -375 24 0 0 0 chr4 189803852 189803876 -12524471 + AT_rich Low_complexity Low_complexity 1 24 0 408 336 88 6 chr4 189803888 189804218 -12524129 + L1M4c LINE L1 3661 4017 -2365 401 282 151 28 chr4 189804246 189804703 -12523644 + L1M4c LINE L1 4097 4609 -1773 3660 182 10 4 chr4 189804863 189805557 -12522790 - L1P LINE L1 -1053 5093 4396 522 232 0 0 chr4 189807841 189807936 -12520411 - MER68 LTR ERV1 -1 561 467 900 192 128 40 chr4 189807937 189808187 -12520160 - L1MA10 LINE L1 -11 6323 6052 1787 184 0 0 chr4 189808208 189808518 -12519829 + L1MB1 LINE L1 5580 5889 -300 1344 252 26 3 chr4 189808519 189808828 -12519519 - MER68 LTR ERV1 -80 482 167 338 46 3 0 chr4 189808928 189808978 -12519369 - AluY SINE Alu -259 43 1 313 298 144 22 chr4 189808978 189809159 -12519188 - HAL1 LINE L1 -973 1534 1332 1856 62 4 0 chr4 189809388 189809630 -12518717 + L1PA7 LINE L1 5912 6154 0 228 310 49 22 chr4 189809875 189810059 -12518288 - L1MEd LINE L1 -4937 1182 994 29 104 0 0 chr4 189810904 189811010 -12517337 + AT_rich Low_complexity Low_complexity 1 106 0 186 167 0 0 chr4 189813766 189813802 -12514545 + CT-rich Low_complexity Low_complexity 3 38 0 411 68 0 0 chr4 189814328 189814387 -12513960 + (GA)n Simple_repeat Simple_repeat 2 60 0 24 32 0 0 chr4 189814644 189814675 -12513672 + AT_rich Low_complexity Low_complexity 1 31 0 24 53 0 0 chr4 189814858 189814896 -12513451 + AT_rich Low_complexity Low_complexity 1 38 0 893 260 5 31 chr4 189815409 189815632 -12512715 - MER58A DNA MER1_type 0 224 8 25 51 0 0 chr4 189815768 189815807 -12512540 + AT_rich Low_complexity Low_complexity 1 39 0 398 276 98 73 chr4 189816794 189817140 -12511207 + L2 LINE L2 2771 3138 -175 411 211 44 0 chr4 189817208 189817322 -12511025 - Zaphod DNA AcHobo -3289 742 624 246 358 73 17 chr4 189817322 189817554 -12510793 + L1ME LINE L1 5625 5869 -301 240 111 0 0 chr4 189819663 189819699 -12508648 + (CA)n Simple_repeat Simple_repeat 1 36 0 864 290 103 5 chr4 189819778 189820147 -12508200 + Zaphod DNA AcHobo 196 600 -3431 246 346 81 19 chr4 189820169 189820380 -12507967 - L1ME LINE L1 -301 5869 5646 710 259 35 31 chr4 189820404 189820663 -12507684 + L1MEc LINE L1 728 987 -5409 286 267 47 33 chr4 189820742 189820892 -12507455 + L1MEc LINE L1 1021 1172 -4941 372 303 26 40 chr4 189820893 189821045 -12507302 + L1MEc LINE L1 1346 1495 -4720 1267 126 0 0 chr4 189821077 189821251 -12507096 + AluSg/x SINE Alu 138 311 -1 1991 223 75 40 chr4 189821255 189821965 -12506382 + L1MEc LINE L1 1718 2447 -3768 2449 48 3 19 chr4 189821965 189822281 -12506066 + AluY SINE Alu 1 311 0 1991 223 75 40 chr4 189822281 189822784 -12505563 + L1MEc LINE L1 2447 2931 -3284 705 313 179 11 chr4 189822796 189823176 -12505171 - L2 LINE L2 -2060 1254 811 21 0 0 0 chr4 189825796 189825817 -12502530 + AT_rich Low_complexity Low_complexity 1 21 0 1824 257 42 32 chr4 189825988 189826653 -12501694 + L1M4 LINE L1 4488 5159 -987 702 217 137 0 chr4 189827096 189827257 -12501090 - MER5A DNA MER1_type -1 188 6 22 0 0 0 chr4 189827841 189827863 -12500484 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 189827989 189828012 -12500335 + AT_rich Low_complexity Low_complexity 1 23 0 1956 115 7 14 chr4 189828084 189828380 -12499967 - AluSx SINE Alu -18 294 1 247 282 66 50 chr4 189828532 189828713 -12499634 - L1ME LINE L1 -316 5854 5671 253 329 115 31 chr4 189829416 189829841 -12498506 - L1ME LINE L1 -2055 5753 5293 300 111 0 0 chr4 189830051 189830096 -12498251 + (TA)n Simple_repeat Simple_repeat 1 45 0 2560 110 11 3 chr4 189830652 189831024 -12497323 - THE1C LTR MaLR 0 375 1 307 306 24 29 chr4 189831093 189831263 -12497084 - L1MEd LINE L1 -4868 1251 1083 5203 119 5 4 chr4 189831299 189832094 -12496253 - L1PB2 LINE L1 -5 6146 5351 513 289 98 65 chr4 189832107 189832224 -12496123 - L1MEd LINE L1 -5033 1086 974 2444 121 8 8 chr4 189832224 189832621 -12495726 - L1PA13 LINE L1 0 6163 5767 513 289 98 65 chr4 189832621 189833073 -12495274 - L1MEd LINE L1 -5145 974 498 335 422 0 0 chr4 189833150 189833266 -12495081 - MIR SINE MIR -141 121 6 21 0 0 0 chr4 189833269 189833290 -12495057 + AT_rich Low_complexity Low_complexity 1 21 0 5971 81 1 43 chr4 189835756 189836580 -12491767 - L1P LINE L1 -4285 1861 1077 2370 97 0 0 chr4 189836580 189836889 -12491458 + AluY SINE Alu 1 309 -2 5971 81 1 43 chr4 189836889 189836979 -12491368 - L1P LINE L1 -5069 1077 985 * 10537 57 0 1 chr4 189836976 189838335 -12490012 + L1P LINE L1 2777 4133 -2013 207 0 0 0 chr4 189838507 189838530 -12489817 + (TG)n Simple_repeat Simple_repeat 2 24 0 494 31 0 15 chr4 189838536 189838601 -12489746 + (TA)n Simple_repeat Simple_repeat 1 64 0 2141 123 0 3 chr4 189839414 189839722 -12488625 - AluSx SINE Alu -5 307 1 21 57 0 0 chr4 189841346 189841381 -12486966 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4 189843410 189843431 -12484916 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr4 189843608 189843644 -12484703 + AT_rich Low_complexity Low_complexity 1 36 0 1258 27 0 0 chr4 189845230 189845380 -12482967 + L1PA4 LINE L1 6005 6154 -1 349 331 122 17 chr4 189845490 189845671 -12482676 - MIR SINE MIR 0 262 63 21 0 0 0 chr4 189846383 189846404 -12481943 + AT_rich Low_complexity Low_complexity 1 21 0 453 299 131 44 chr4 189847542 189847863 -12480484 + L2 LINE L2 1823 2171 -1143 283 202 12 71 chr4 189847874 189847958 -12480389 - MER3 DNA MER1_type 0 209 131 197 259 176 12 chr4 189847969 189848054 -12480293 + L2 LINE L2 2438 2536 -778 1875 132 3 3 chr4 189848085 189848402 -12479945 + AluSx SINE Alu 3 289 -23 1512 220 24 6 chr4 189848485 189848821 -12479526 + L1MC4a LINE L1 5564 5905 -1903 23 54 0 0 chr4 189848855 189848892 -12479455 + AT_rich Low_complexity Low_complexity 1 37 0 548 309 209 12 chr4 189848907 189849381 -12478966 + L2 LINE L2 2533 3093 -220 215 292 0 14 chr4 189850058 189850130 -12478217 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 803 189 20 0 chr4 189850950 189851098 -12477249 - AluJb SINE Alu -14 298 148 1977 188 14 3 chr4 189851649 189852000 -12476347 + MLT1A1 LTR MaLR 11 365 0 23 101 0 0 chr4 189852799 189852878 -12475469 + AT_rich Low_complexity Low_complexity 1 79 0 243 0 0 0 chr4 189853459 189853486 -12474861 + (TG)n Simple_repeat Simple_repeat 2 28 0 27 29 0 0 chr4 189853622 189853656 -12474691 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr4 189855129 189855152 -12473195 + AT_rich Low_complexity Low_complexity 1 23 0 330 35 35 18 chr4 189856478 189856535 -12471812 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 333 0 0 0 chr4 189859528 189859565 -12468782 + (TA)n Simple_repeat Simple_repeat 2 38 0 216 67 0 0 chr4 189860888 189860918 -12467429 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 2045 130 17 3 chr4 189861729 189862029 -12466318 + AluSx SINE Alu 3 306 -6 4757 42 0 3 chr4 189862030 189862052 -12466295 - L1P LINE L1 -752 5394 5373 649 207 23 11 chr4 189862052 189862226 -12466121 - L1MD1 LINE L1 -7 6235 6060 4757 42 0 3 chr4 189862226 189862802 -12465545 - L1PA2 LINE L1 -773 5373 4798 6866 8 1 0 chr4 189862802 189863575 -12464772 + L1PA2 LINE L1 5380 6154 -1 1557 237 41 5 chr4 189863575 189863988 -12464359 - L1MD1 LINE L1 -173 6069 5642 223 330 128 55 chr4 189864890 189865345 -12463002 + L2 LINE L2 1707 2194 -1120 374 332 53 32 chr4 189865492 189865682 -12462665 - MIR SINE MIR -36 226 33 218 390 62 27 chr4 189865790 189866082 -12462265 + L2 LINE L2 2367 2668 -646 197 319 11 44 chr4 189866289 189866380 -12461967 + L2 LINE L2 3003 3090 -182 326 349 72 7 chr4 189866416 189866568 -12461779 + MIR SINE MIR 23 184 -78 287 357 26 32 chr4 189867360 189867514 -12460833 - L2 LINE L2 -2 3311 3159 182 351 0 0 chr4 189869365 189869422 -12458925 + L2 LINE L2 3214 3270 -2 234 303 20 10 chr4 189869961 189870060 -12458287 - MIR3 SINE MIR -3 205 106 24 32 0 0 chr4 189870727 189870758 -12457589 + AT_rich Low_complexity Low_complexity 1 31 0 192 77 0 0 chr4 189872071 189872097 -12456250 + (T)n Simple_repeat Simple_repeat 1 26 0 1377 169 0 24 chr4 189872448 189872696 -12455651 - AluJo SINE Alu -3 309 68 2732 73 3 0 chr4 189872761 189873115 -12455232 - THE1A LTR MaLR 0 355 1 297 417 0 6 chr4 189873911 189874074 -12454273 - MIR3 SINE MIR 0 208 47 224 359 45 73 chr4 189874653 189875007 -12453340 - L2 LINE L2 -60 3212 2869 190 315 79 47 chr4 189875497 189875624 -12452723 - L2 LINE L2 -586 2728 2598 31 44 0 0 chr4 189876440 189876485 -12451862 + AT_rich Low_complexity Low_complexity 1 45 0 277 160 0 0 chr4 189876954 189877004 -12451343 - L1MC4 LINE L1 -1340 6702 6653 32 0 0 0 chr4 189877732 189877764 -12450583 + AT_rich Low_complexity Low_complexity 1 32 0 394 299 70 32 chr4 189879863 189880050 -12448297 + MIR SINE MIR 58 251 -11 251 377 110 0 chr4 189880380 189880680 -12447667 - L2 LINE L2 -1276 2038 1706 207 0 0 0 chr4 189881393 189881416 -12446931 + (A)n Simple_repeat Simple_repeat 1 23 0 275 238 12 24 chr4 189881716 189881800 -12446547 + GA-rich Low_complexity Low_complexity 2 84 0 2014 115 35 47 chr4 189882371 189882709 -12445638 - MER1B DNA MER1_type -3 334 1 192 77 0 0 chr4 189882830 189882856 -12445491 + (CA)n Simple_repeat Simple_repeat 1 26 0 936 296 195 10 chr4 189883258 189883761 -12444586 - L2 LINE L2 -1163 2151 1556 222 91 0 0 chr4 189883773 189883806 -12444541 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 560 300 84 9 chr4 189884513 189884740 -12443607 + MIR SINE MIR 12 255 -7 240 333 52 62 chr4 189884980 189885190 -12443157 + L2 LINE L2 2184 2391 -923 699 198 0 0 chr4 189885373 189885499 -12442848 + FLAM_C SINE Alu 1 126 -17 334 229 64 64 chr4 189885727 189885836 -12442511 - MIR SINE MIR -36 226 118 476 238 25 0 chr4 189886170 189886292 -12442055 + L1MA4 LINE L1 5715 5839 -461 180 77 0 0 chr4 189886292 189886318 -12442029 + (CAA)n Simple_repeat Simple_repeat 1 26 0 24 32 0 0 chr4 189886977 189887008 -12441339 + AT_rich Low_complexity Low_complexity 1 31 0 195 317 134 0 chr4 189887773 189887855 -12440492 + L2 LINE L2 3209 3301 -12 263 335 129 26 chr4 189888052 189888207 -12440140 + MER5A DNA MER1_type 1 171 -18 4883 260 151 33 chr4 189889669 189892181 -12436166 + L1PA15 LINE L1 4 2810 -4771 9269 219 33 3 chr4 189892181 189895210 -12433137 + L1PA15 LINE L1 4527 7590 -13 22 0 0 0 chr4 189896320 189896342 -12432005 + AT_rich Low_complexity Low_complexity 1 22 0 1898 155 0 31 chr4 189896409 189896731 -12431616 - AluSx SINE Alu 0 312 1 186 426 40 0 chr4 189897500 189897601 -12430746 - L2 LINE L2 -77 3195 3091 192 404 43 11 chr4 189897606 189897700 -12430647 + MIR3 SINE MIR 111 207 -1 318 171 0 49 chr4 189898249 189898331 -12430016 + L1ME4a LINE L1 6043 6120 -1 238 281 0 0 chr4 189899441 189899498 -12428849 + L2 LINE L2 3257 3313 0 250 57 0 0 chr4 189899642 189899677 -12428670 - L1MA3 LINE L1 0 6305 6271 24 67 0 0 chr4 189899735 189899780 -12428567 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr4 189901040 189901063 -12427284 + AT_rich Low_complexity Low_complexity 1 23 0 392 286 169 26 chr4 189901886 189902075 -12426272 + MIR SINE MIR 36 251 -11 400 233 58 19 chr4 189902888 189902991 -12425356 + MLT1D LTR MaLR 20 126 -379 1102 206 45 12 chr4 189903036 189903279 -12425068 + MLT1D LTR MaLR 255 505 0 339 329 38 19 chr4 189903279 189903437 -12424910 - MER20B DNA MER1_type -622 161 1 28 0 0 0 chr4 189903940 189903968 -12424379 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr4 189904259 189904302 -12424045 + AT_rich Low_complexity Low_complexity 1 43 0 24 53 0 0 chr4 189904444 189904482 -12423865 + AT_rich Low_complexity Low_complexity 1 38 0 29 47 0 0 chr4 189905346 189905389 -12422958 + AT_rich Low_complexity Low_complexity 1 43 0 922 185 193 4 chr4 189906810 189907075 -12421272 + MER33 DNA MER1_type 1 315 -9 297 243 46 138 chr4 189907337 189907397 -12420950 - MER5B DNA MER1_type -7 171 107 2401 74 3 0 chr4 189907397 189907709 -12420638 + AluSp SINE Alu 1 313 0 297 243 46 138 chr4 189907709 189907800 -12420547 - MER5B DNA MER1_type -71 107 34 223 345 124 30 chr4 189908148 189908478 -12419869 + L2 LINE L2 2953 3313 0 805 202 229 0 chr4 189908711 189908934 -12419413 - AluJb SINE Alu -6 306 33 290 237 0 8 chr4 189908949 189909010 -12419337 - AluJ/monomer SINE Alu -250 51 1 254 336 133 35 chr4 189911724 189911950 -12416397 + MIR SINE MIR 5 252 -10 2328 85 3 10 chr4 189912982 189913288 -12415059 - AluSg SINE Alu -6 304 1 223 341 119 8 chr4 189913475 189913601 -12414746 + MER5A DNA MER1_type 7 146 -43 270 271 105 23 chr4 189914061 189914194 -12414153 - L1MB8 LINE L1 -117 6061 5918 23 78 0 0 chr4 189917289 189917340 -12411007 + AT_rich Low_complexity Low_complexity 1 51 0 214 226 19 0 chr4 189918397 189918450 -12409897 + (TA)n Simple_repeat Simple_repeat 1 54 0 555 0 40 0 chr4 189919821 189919896 -12408451 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 362 360 54 21 chr4 189920093 189920335 -12408012 + MLT1I LTR MaLR 58 307 -102 1413 238 78 51 chr4 189920732 189921220 -12407127 + MLT1F1 LTR MaLR 67 567 0 519 286 48 0 chr4 189921221 189921410 -12406937 + MLT1F1-int LTR MaLR 2 199 -1172 * 927 239 66 21 chr4 189921409 189921698 -12406649 + MLT1F1-int LTR MaLR 309 610 -761 499 128 58 12 chr4 189921739 189921825 -12406522 + MLT1F1 LTR MaLR 478 567 0 2435 62 0 3 chr4 189922569 189922877 -12405470 + AluY SINE Alu 1 307 -4 220 211 0 0 chr4 189923247 189923285 -12405062 + (TATG)n Simple_repeat Simple_repeat 2 39 0 1286 207 36 26 chr4 189923335 189923523 -12404824 - AluJb SINE Alu 0 312 118 201 39 0 0 chr4 189923523 189923549 -12404798 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1286 207 36 26 chr4 189923549 189923669 -12404678 - AluJb SINE Alu -194 118 1 228 180 16 16 chr4 189925531 189925592 -12402755 + L1MEd LINE L1 990 1050 -5069 246 156 0 0 chr4 189925844 189925889 -12402458 + (TG)n Simple_repeat Simple_repeat 2 46 0 526 284 74 43 chr4 189925958 189926257 -12402090 - L1MB8 LINE L1 -308 5813 5506 23 33 0 0 chr4 189926811 189926841 -12401506 + AT_rich Low_complexity Low_complexity 1 30 0 310 365 9 9 chr4 189927146 189927261 -12401086 - MIR SINE MIR -108 154 40 23 0 0 0 chr4 189927331 189927354 -12400993 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 189927543 189927567 -12400780 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr4 189927626 189927663 -12400684 + AT_rich Low_complexity Low_complexity 1 37 0 1860 145 3 0 chr4 189927686 189927968 -12400379 - AluSg SINE Alu -21 289 7 180 0 0 0 chr4 189929536 189929556 -12398791 + (CCCA)n Simple_repeat Simple_repeat 1 20 0 445 211 298 6 chr4 189929646 189929807 -12398540 - MER3 DNA MER1_type -1 208 1 260 338 28 42 chr4 189929850 189929992 -12398355 - MIR SINE MIR -110 152 13 1381 242 23 59 chr4 189930395 189930871 -12397476 + MLT1C LTR MaLR 3 461 -6 25 31 0 0 chr4 189931340 189931372 -12396975 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr4 189932606 189932628 -12395719 + AT_rich Low_complexity Low_complexity 1 22 0 2000 112 0 4 chr4 189932847 189933116 -12395231 + AluSx SINE Alu 1 268 -44 216 0 0 0 chr4 189933126 189933150 -12395197 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 282 367 27 27 chr4 189933701 189933848 -12394499 - MIR3 SINE MIR -6 202 56 23 0 0 0 chr4 189933983 189934006 -12394341 + AT_rich Low_complexity Low_complexity 1 23 0 346 305 49 27 chr4 189934022 189934245 -12394102 + L1ME4a LINE L1 5626 5853 -268 200 227 27 27 chr4 189934260 189934335 -12394012 + (TATAA)n Simple_repeat Simple_repeat 4 78 0 21 0 0 0 chr4 189936429 189936450 -12391897 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr4 189937945 189937986 -12390361 + AT_rich Low_complexity Low_complexity 1 41 0 480 35 0 0 chr4 189940379 189940437 -12387910 + (TATG)n Simple_repeat Simple_repeat 2 59 0 180 219 0 0 chr4 189942895 189942936 -12385411 + (CCG)n Simple_repeat Simple_repeat 3 43 0 32 81 0 0 chr4 189943460 189943534 -12384813 + GC_rich Low_complexity Low_complexity 1 74 0 225 172 0 62 chr4 189943795 189943859 -12384488 + C-rich Low_complexity Low_complexity 2 61 0 423 294 76 98 chr4 189943859 189944552 -12383795 - L1M2 LINE L1 -5641 1208 533 376 244 16 0 chr4 189945872 189945999 -12382348 + (CATA)n Simple_repeat Simple_repeat 2 130 0 31 0 0 0 chr4 189946633 189946664 -12381683 + AT_rich Low_complexity Low_complexity 1 31 0 1693 103 151 4 chr4 189947422 189947693 -12380654 + AluY SINE Alu 1 311 0 361 222 188 26 chr4 189948479 189948596 -12379751 + L2 LINE L2 3174 3309 -4 30 45 0 0 chr4 189949118 189949162 -12379185 + AT_rich Low_complexity Low_complexity 1 44 0 1397 198 117 24 chr4 189949595 189949929 -12378418 - MLT1A1 LTR MaLR 0 365 1 2185 185 14 9 chr4 189950069 189950512 -12377835 - L1MB3 LINE L1 0 6183 5739 499 223 22 7 chr4 189950627 189950766 -12377581 - L1MB3 LINE L1 -875 5271 5131 780 127 21 14 chr4 189950766 189950908 -12377439 + MER96B DNA MER1_type? 95 237 -180 264 122 0 0 chr4 189952300 189952341 -12376006 + (TA)n Simple_repeat Simple_repeat 1 41 0 21 82 0 0 chr4 189952475 189952524 -12375823 + AT_rich Low_complexity Low_complexity 1 49 0 368 318 55 40 chr4 189953333 189953607 -12374740 - L1ME LINE L1 -579 5542 5265 21 36 0 0 chr4 189953968 189953996 -12374351 + AT_rich Low_complexity Low_complexity 1 28 0 1522 177 56 143 chr4 189954564 189955117 -12373230 - MLT1D LTR MaLR 0 505 1 7754 20 0 0 chr4 189955925 189957384 -12370963 - L1PA3 LINE L1 0 6155 4698 259 300 83 37 chr4 189957535 189957835 -12370512 + L1ME LINE L1 4744 5057 -1089 2387 80 3 0 chr4 189957884 189958185 -12370162 + AluY SINE Alu 1 302 -9 241 344 20 10 chr4 189958966 189959161 -12369186 + L1ME LINE L1 5727 5923 -198 241 227 27 0 chr4 189959415 189959490 -12368857 + HAL1b LINE L1 1264 1340 -8 778 201 32 11 chr4 189959960 189960149 -12368198 + MER3 DNA MER1_type 7 199 -10 14056 128 17 9 chr4 189960250 189962493 -12365854 + Tigger1 DNA MER2_type 159 2418 0 772 262 26 18 chr4 189962618 189962652 -12365695 - MIR SINE MIR -27 235 203 1400 203 78 9 chr4 189962652 189962973 -12365374 - MER2 DNA MER2_type 0 344 2 772 262 26 18 chr4 189962973 189963167 -12365180 - MIR SINE MIR -59 203 5 466 139 0 38 chr4 189963865 189963944 -12364403 - Charlie3 DNA MER1_type -9 2701 2626 * 785 454 0 0 chr4 189963942 189964270 -12364077 - Tigger1 DNA MER2_type -2061 357 30 364 222 0 25 chr4 189965791 189965872 -12362475 + MER81 DNA DNA 36 114 0 542 183 0 8 chr4 189966922 189967048 -12361299 + CT-rich Low_complexity Low_complexity 4 128 0 533 271 24 5 chr4 189968616 189968823 -12359524 + L1MB7 LINE L1 4992 5202 -944 1061 198 28 5 chr4 189968830 189969047 -12359300 + MLT2B3 LTR ERVL 8 229 -325 860 195 10 45 chr4 189969042 189969242 -12359105 + MSTD LTR MaLR 204 396 0 * 2691 241 36 67 chr4 189969245 189970206 -12358141 + L1MB7 LINE L1 5201 6127 -57 185 220 0 17 chr4 189970286 189970345 -12358002 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 1445 207 3 13 chr4 189970682 189970986 -12357361 + AluJo SINE Alu 1 301 -11 491 226 70 95 chr4 189972290 189972533 -12355814 + MIR SINE MIR 26 262 0 642 176 152 0 chr4 189972895 189973020 -12355327 + MLT1E LTR MaLR 403 546 -47 308 333 97 13 chr4 189973059 189973287 -12355060 + L1M4 LINE L1 4780 5026 -1120 3810 229 71 36 chr4 189973472 189975396 -12352951 - L1MD2 LINE L1 0 6753 4772 373 176 0 0 chr4 189975402 189975476 -12352871 - L1MD2 LINE L1 -1963 4577 4504 * 2385 226 81 21 chr4 189975461 189977200 -12351147 - L1MD2 LINE L1 -3153 3387 1448 605 211 69 6 chr4 189977195 189977370 -12350977 - L1MD2 LINE L1 -5376 1167 982 * 394 280 54 30 chr4 189977479 189977647 -12350700 - L1MD2 LINE L1 -6332 208 37 275 314 85 78 chr4 189979016 189979462 -12348885 + MLT1J LTR MaLR 2 450 -61 302 345 93 53 chr4 189979528 189979774 -12348573 + L1MEd LINE L1 402 657 -5548 436 330 109 36 chr4 189979854 189980302 -12348045 + L1MEd LINE L1 1228 1708 -4688 1828 135 7 10 chr4 189980468 189980803 -12347544 + AluSq SINE Alu 1 313 0 21 57 0 0 chr4 189981351 189981386 -12346961 + AT_rich Low_complexity Low_complexity 1 35 0 1282 216 3 33 chr4 189981529 189981834 -12346513 + AluJo SINE Alu 1 296 -16 233 329 53 12 chr4 189981840 189982010 -12346337 + L1M4 LINE L1 4442 4618 -1528 190 297 129 10 chr4 189982910 189983011 -12345336 - L2 LINE L2 -671 2643 2531 446 268 87 0 chr4 189983264 189983402 -12344945 + MER96 DNA MER1_type? 25 174 -1 1553 196 35 40 chr4 189985454 189985852 -12342495 + MSTD LTR MaLR 1 396 0 22 0 0 0 chr4 189986399 189986421 -12341926 + AT_rich Low_complexity Low_complexity 1 22 0 382 321 103 59 chr4 189986880 189987474 -12340873 + HAL1 LINE L1 826 1445 -1062 201 39 0 0 chr4 189987502 189987528 -12340819 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1954 229 59 0 chr4 189987575 189988052 -12340295 + MLT1D LTR MaLR 1 505 0 1385 249 101 32 chr4 189988285 189988912 -12339435 - L1MDa LINE L1 -4866 1674 1005 260 141 13 39 chr4 189988921 189988999 -12339348 + (TA)n Simple_repeat Simple_repeat 2 77 0 2418 42 0 10 chr4 189989950 189990239 -12338108 - AluY SINE Alu -15 296 11 191 326 63 42 chr4 189990759 189990854 -12337493 + MIR3 SINE MIR 85 181 -27 2268 253 66 5 chr4 189990985 189991633 -12336714 - MER76 LTR ERV 0 688 1 246 280 210 70 chr4 189991926 189992083 -12336264 - MIR SINE MIR -81 181 3 5236 176 20 24 chr4 189993071 189994456 -12333891 - L1MA6 LINE L1 -3 6297 4911 3460 175 41 20 chr4 189994453 189995191 -12333156 + L1MA6 LINE L1 4170 4922 -1224 * 591 272 108 17 chr4 189995302 189995534 -12332813 + MIR SINE MIR 10 262 0 189 0 0 0 chr4 189996614 189996635 -12331712 + (T)n Simple_repeat Simple_repeat 1 21 0 270 56 0 0 chr4 189998047 189998083 -12330264 + (TG)n Simple_repeat Simple_repeat 2 37 0 182 303 40 0 chr4 189998557 189998633 -12329714 + MIR SINE MIR 35 113 -95 21 0 0 0 chr4 189998666 189998687 -12329660 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr4 189999230 189999262 -12329085 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 190000120 190000141 -12328206 + AT_rich Low_complexity Low_complexity 1 21 0 183 162 0 0 chr4 190000176 190000213 -12328134 + (CA)n Simple_repeat Simple_repeat 2 38 0 3611 137 19 16 chr4 190000262 190000890 -12327457 - Tigger3(Golem) DNA MER2_type -3 3026 2397 1921 106 7 11 chr4 190000992 190001275 -12327072 - AluSg SINE Alu -28 282 1 947 96 7 7 chr4 190001275 190001411 -12326936 - AluSq/x SINE Alu -176 136 1 1509 12 0 0 chr4 190001700 190001869 -12326478 + AluY SINE Alu 143 311 0 823 264 61 43 chr4 190002783 190003109 -12325238 - HAL1 LINE L1 -674 1833 1502 2848 138 95 2 chr4 190003117 190003579 -12324768 - MER1A DNA MER1_type 0 529 25 579 224 46 13 chr4 190003585 190003737 -12324610 - HAL1 LINE L1 -1048 1459 1303 448 306 37 44 chr4 190003793 190004198 -12324149 - HAL1 LINE L1 -1342 1165 764 518 269 24 6 chr4 190006109 190006276 -12322071 + MLT1C LTR MaLR 6 175 -292 5736 91 12 5 chr4 190006298 190007103 -12321244 + L1PA11 LINE L1 5364 6174 0 959 214 66 33 chr4 190007126 190007397 -12320950 + MLT1C LTR MaLR 171 450 -17 27 49 0 0 chr4 190007695 190007736 -12320611 + AT_rich Low_complexity Low_complexity 1 41 0 210 286 0 0 chr4 190007853 190007951 -12320396 + (TA)n Simple_repeat Simple_repeat 1 98 0 1352 202 29 26 chr4 190008487 190008829 -12319518 - MLT1A1 LTR MaLR -7 358 16 2185 86 14 0 chr4 190009131 190009293 -12319054 - AluY SINE Alu -16 295 126 189 0 0 0 chr4 190009293 190009314 -12319033 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2185 86 14 0 chr4 190009314 190009442 -12318905 - AluY SINE Alu -185 126 1 2337 53 7 3 chr4 190009733 190010032 -12318315 + L1PA5 LINE L1 5848 6147 -7 21 71 0 0 chr4 190010513 190010555 -12317792 + AT_rich Low_complexity Low_complexity 1 42 0 1928 140 0 3 chr4 190010578 190010896 -12317451 + AluSg SINE Alu 1 310 0 290 337 65 20 chr4 190011607 190011806 -12316541 - MIR SINE MIR -50 212 5 245 246 42 17 chr4 190012244 190012362 -12315985 + (TA)n Simple_repeat Simple_repeat 2 122 0 280 235 44 0 chr4 190012667 190012735 -12315612 - MER92C LTR ERV1 0 554 484 2339 76 0 10 chr4 190012842 190013145 -12315202 - AluSx SINE Alu -12 300 1 302 231 39 13 chr4 190013202 190013280 -12315067 - MER92C LTR ERV1 -443 111 32 25 31 0 0 chr4 190013461 190013493 -12314854 + AT_rich Low_complexity Low_complexity 1 32 0 218 267 0 17 chr4 190013569 190013629 -12314718 - MIR SINE MIR -104 158 100 362 317 66 12 chr4 190014994 190015161 -12313186 + MIR SINE MIR 86 261 -1 182 364 41 25 chr4 190015155 190015276 -12313071 - MIR3 SINE MIR -44 164 42 * 564 308 53 46 chr4 190015444 190015707 -12312640 - MER115 DNA AcHobo 0 693 429 393 305 53 15 chr4 190015734 190015865 -12312482 - MER115 DNA AcHobo -339 354 219 1731 125 0 96 chr4 190018340 190018729 -12309618 - AluSx SINE Alu 0 359 1 30 27 0 0 chr4 190018729 190018766 -12309581 + AT_rich Low_complexity Low_complexity 1 37 0 475 299 125 52 chr4 190019096 190019608 -12308739 - L2 LINE L2 0 3272 2728 215 311 98 15 chr4 190019600 190019732 -12308615 - MIR3 SINE MIR -9 199 57 * 243 293 57 38 chr4 190020154 190020260 -12308087 + MIR SINE MIR 15 122 -140 369 256 24 12 chr4 190020265 190020429 -12307918 + (TA)n Simple_repeat Simple_repeat 1 166 0 183 205 0 0 chr4 190020535 190020574 -12307773 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 33 43 0 0 chr4 190020604 190020651 -12307696 + AT_rich Low_complexity Low_complexity 1 47 0 192 279 0 0 chr4 190020651 190020694 -12307653 + L2 LINE L2 3255 3297 -16 189 74 0 0 chr4 190021194 190021221 -12307126 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 349 287 139 0 chr4 190023198 190023306 -12305041 - L2 LINE L2 0 3272 3150 29 47 0 0 chr4 190024226 190024269 -12304078 + AT_rich Low_complexity Low_complexity 1 43 0 654 207 115 48 chr4 190024324 190024567 -12303780 - L1ME3 LINE L1 0 6162 5919 1709 174 10 0 chr4 190025446 190025745 -12302602 - AluJo SINE Alu -10 302 1 244 359 22 22 chr4 190027303 190027395 -12300952 + MIR SINE MIR 8 99 -163 273 326 160 66 chr4 190028079 190028245 -12300102 + L2 LINE L2 1048 1197 -2117 2414 58 7 0 chr4 190028245 190028553 -12299794 - AluY SINE Alu -1 310 1 273 326 160 66 chr4 190028553 190028705 -12299642 + L2 LINE L2 1197 1396 -1918 392 307 49 19 chr4 190028943 190029148 -12299199 + L2 LINE L2 1508 1718 -1596 693 253 6 0 chr4 190029251 190029409 -12298938 - MER3 DNA MER1_type -48 161 3 195 326 66 44 chr4 190029802 190030029 -12298318 - L2 LINE L2 -224 3048 2817 26 0 0 0 chr4 190031655 190031681 -12296666 + AT_rich Low_complexity Low_complexity 1 26 0 546 130 11 0 chr4 190032773 190032865 -12295482 + FLAM_A SINE Alu 39 131 -11 23 0 0 0 chr4 190032925 190032948 -12295399 + AT_rich Low_complexity Low_complexity 1 23 0 578 213 29 92 chr4 190033376 190033615 -12294732 + MER58A DNA MER1_type 1 224 0 30 27 0 0 chr4 190033633 190033670 -12294677 + AT_rich Low_complexity Low_complexity 1 37 0 249 324 40 27 chr4 190034499 190034647 -12293700 + L2 LINE L2 3163 3312 -1 1587 174 3 50 chr4 190037959 190038128 -12290219 - AluJo SINE Alu -10 302 153 2051 107 23 26 chr4 190038128 190038438 -12289909 - AluSq SINE Alu -4 309 1 1587 174 3 50 chr4 190038438 190038585 -12289762 - AluJo SINE Alu -159 153 1 409 288 14 48 chr4 190039964 190040110 -12288237 - L2 LINE L2 0 3313 3173 585 228 8 138 chr4 190040184 190040452 -12287895 + MIR SINE MIR 21 253 -9 241 347 5 14 chr4 190041200 190041422 -12286925 + HAL1 LINE L1 1128 1347 -1160 2419 163 30 5 chr4 190041681 190042087 -12286260 - MSTA LTR MaLR -10 418 3 2599 154 15 76 chr4 190042840 190043445 -12284902 + MER101B LTR ERV1 1 568 -2 1187 301 68 6 chr4 190045289 190045761 -12282586 + L1ME3A LINE L1 5451 5951 -219 2371 71 3 0 chr4 190045771 190046067 -12282280 + AluY SINE Alu 1 297 -14 309 315 61 56 chr4 190046152 190046349 -12281998 + L1ME3A LINE L1 5962 6159 -11 234 268 70 28 chr4 190046968 190047039 -12281308 + L2 LINE L2 3237 3310 -3 1494 285 102 35 chr4 190048008 190048103 -12280244 + L2 LINE L2 2012 2099 -1215 2278 90 0 0 chr4 190048103 190048402 -12279945 - AluY SINE Alu -12 299 1 1494 285 102 35 chr4 190048402 190049043 -12279304 + L2 LINE L2 2099 2797 -517 957 340 30 26 chr4 190049178 190049703 -12278644 + L2 LINE L2 2793 3313 0 204 200 0 0 chr4 190049874 190049924 -12278423 + (TA)n Simple_repeat Simple_repeat 2 51 0 23 54 0 0 chr4 190049987 190050024 -12278323 + AT_rich Low_complexity Low_complexity 1 37 0 1875 214 41 17 chr4 190052256 190052667 -12275680 - MSTB LTR MaLR -5 421 1 35 24 0 0 chr4 190052819 190052861 -12275486 + AT_rich Low_complexity Low_complexity 1 42 0 1679 178 39 45 chr4 190054309 190054442 -12273905 + MLT1A1 LTR MaLR 13 145 -220 1802 156 37 0 chr4 190054442 190054616 -12273731 - AluSx SINE Alu -6 306 115 444 51 0 0 chr4 190054616 190054675 -12273672 + (TG)n Simple_repeat Simple_repeat 2 60 0 1802 156 37 0 chr4 190054675 190054795 -12273552 - AluSx SINE Alu -197 115 1 1679 178 39 45 chr4 190054795 190055016 -12273331 + MLT1A1 LTR MaLR 145 365 0 519 265 84 6 chr4 190056657 190056823 -12271524 - MIR3 SINE MIR -5 203 25 413 288 61 8 chr4 190057286 190057418 -12270929 - MIR SINE MIR -92 170 32 326 338 62 55 chr4 190061073 190061475 -12266872 - MLT1J LTR MaLR 0 511 107 345 174 0 0 chr4 190063382 190063451 -12264896 + GA-rich Low_complexity Low_complexity 1 69 0 24 0 0 0 chr4 190063797 190063821 -12264526 + AT_rich Low_complexity Low_complexity 1 24 0 525 303 30 74 chr4 190064530 190064936 -12263411 + L1MEc LINE L1 43 430 -5966 1417 168 10 50 chr4 190065669 190065967 -12262380 - AluJo SINE Alu -16 296 11 25 75 0 0 chr4 190066378 190066431 -12261916 + AT_rich Low_complexity Low_complexity 1 53 0 1938 146 3 19 chr4 190066544 190066853 -12261494 + AluSx SINE Alu 1 304 -8 261 211 18 0 chr4 190067364 190067421 -12260926 + MLT1H LTR MaLR 6 63 -486 25 0 0 0 chr4 190067479 190067504 -12260843 + AT_rich Low_complexity Low_complexity 1 25 0 720 301 75 0 chr4 190069961 190070174 -12258173 - MIR SINE MIR 0 262 34 236 374 6 3 chr4 190070183 190070338 -12258009 + MIR3 SINE MIR 5 161 -47 1543 171 17 34 chr4 190071013 190071305 -12257042 + AluJb SINE Alu 3 289 -23 1006 293 54 38 chr4 190074532 190074600 -12253747 + LTR16A LTR ERVL 18 83 -367 1565 172 76 3 chr4 190074600 190074891 -12253456 - AluJb SINE Alu 0 312 1 1006 293 54 38 chr4 190074891 190075248 -12253099 + LTR16A LTR ERVL 83 450 0 309 333 80 15 chr4 190076110 190076311 -12252036 - MIR SINE MIR -4 258 45 202 222 49 0 chr4 190076566 190076647 -12251700 + (TA)n Simple_repeat Simple_repeat 2 86 0 496 239 12 0 chr4 190076660 190076823 -12251524 + (TA)n Simple_repeat Simple_repeat 1 165 0 236 247 11 11 chr4 190076824 190076913 -12251434 + L1MC4 LINE L1 6615 6703 -1339 197 224 17 0 chr4 190076913 190076971 -12251376 + (TA)n Simple_repeat Simple_repeat 2 60 0 507 179 13 96 chr4 190077618 190077774 -12250573 + AluJb SINE Alu 170 312 0 1825 187 23 6 chr4 190078161 190078503 -12249844 + MER7A DNA MER2_type 1 346 0 24 53 0 0 chr4 190079203 190079241 -12249106 + AT_rich Low_complexity Low_complexity 1 38 0 435 312 59 23 chr4 190079929 190080150 -12248197 + MIR SINE MIR 28 256 -6 210 338 26 0 chr4 190080263 190080340 -12248007 + L2 LINE L2 3194 3272 0 20751 91 6 10 chr4 190080391 190084199 -12244148 + L1PA7 LINE L1 2362 6154 0 207 0 0 0 chr4 190084384 190084407 -12243940 + (CA)n Simple_repeat Simple_repeat 1 46 0 207 0 0 0 chr4 190084407 190084430 -12243917 + (CA)n Simple_repeat Simple_repeat 2 24 0 186 43 0 0 chr4 190085906 190085929 -12242418 + (TG)n Simple_repeat Simple_repeat 1 23 0 315 342 104 30 chr4 190086568 190086799 -12241548 + LTR16A LTR ERVL 95 342 -108 311 144 37 20 chr4 190086828 190086922 -12241425 - AluJb SINE Alu -169 133 83 230 296 90 77 chr4 190086994 190087227 -12241120 + MLT1J2 LTR MaLR 205 440 -10 257 128 0 0 chr4 190087803 190087842 -12240505 + (CA)n Simple_repeat Simple_repeat 2 40 0 282 277 102 36 chr4 190088364 190088501 -12239846 + MIR SINE MIR 116 261 -1 2194 104 3 10 chr4 190089289 190089587 -12238760 + AluSc SINE Alu 1 296 -13 279 0 0 0 chr4 190089737 190089768 -12238579 + (CA)n Simple_repeat Simple_repeat 2 32 0 23 54 0 0 chr4 190089790 190089827 -12238520 + AT_rich Low_complexity Low_complexity 1 37 0 614 143 0 27 chr4 190090041 190090153 -12238194 - L1PA8 LINE L1 0 6172 6064 2171 142 19 25 chr4 190090392 190090758 -12237589 + THE1B LTR MaLR 1 364 0 272 317 19 31 chr4 190091366 190091527 -12236820 + HAL1b LINE L1 217 375 -973 195 100 0 0 chr4 190091862 190091892 -12236455 + (CA)n Simple_repeat Simple_repeat 1 30 0 5074 194 28 10 chr4 190093815 190094869 -12233478 + L1MC1 LINE L1 5262 6333 0 1551 52 0 38 chr4 190094928 190095139 -12233208 - L1PA4 LINE L1 -3 6152 5950 27 49 0 0 chr4 190095484 190095525 -12232822 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr4 190097710 190097733 -12230614 + AT_rich Low_complexity Low_complexity 1 23 0 21 82 0 0 chr4 190098149 190098198 -12230149 + AT_rich Low_complexity Low_complexity 1 49 0 13356 145 29 22 chr4 190098766 190099088 -12229259 - Tigger1 DNA MER2_type 0 2418 2100 1955 143 3 10 chr4 190099088 190099402 -12228945 - AluSx SINE Alu 0 312 1 13356 145 29 22 chr4 190099402 190099931 -12228416 - Tigger1 DNA MER2_type -318 2100 1576 1933 128 7 30 chr4 190099931 190100236 -12228111 - AluSx SINE Alu -14 298 1 13356 145 29 22 chr4 190100236 190101784 -12226563 - Tigger1 DNA MER2_type -842 1576 2 251 300 191 32 chr4 190101817 190102310 -12226037 + L2 LINE L2 1794 2364 -950 357 0 23 0 chr4 190102368 190102412 -12225935 + (TTTTC)n Simple_repeat Simple_repeat 1 180 0 967 106 35 0 chr4 190102412 190102553 -12225794 - AluSg/x SINE Alu 0 353 164 1280 248 7 19 chr4 190103066 190103376 -12224971 - AluJo SINE Alu -6 306 1 233 376 162 5 chr4 190103518 190103728 -12224619 + MIR SINE MIR 20 262 0 497 298 120 47 chr4 190104600 190104959 -12223388 - MLT1J2 LTR MaLR -45 405 21 22 0 0 0 chr4 190105115 190105137 -12223210 + AT_rich Low_complexity Low_complexity 1 22 0 184 268 0 36 chr4 190105203 190105259 -12223088 - MIR SINE MIR -112 150 97 39 22 0 0 chr4 190105419 190105465 -12222882 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr4 190105703 190105731 -12222616 + AT_rich Low_complexity Low_complexity 1 28 0 201 297 0 0 chr4 190106220 190106294 -12222053 + T-rich Low_complexity Low_complexity 2 75 0 27 29 0 0 chr4 190106614 190106648 -12221699 + AT_rich Low_complexity Low_complexity 1 34 0 911 187 35 10 chr4 190106649 190106852 -12221495 - L1MD1 LINE L1 -11 6625 6418 992 235 154 27 chr4 190106864 190107302 -12221045 - MLT1D LTR MaLR -21 481 6 4307 257 63 35 chr4 190107302 190108042 -12220305 - L1MD1 LINE L1 -199 6437 5719 1794 146 10 31 chr4 190108042 190108336 -12220011 - AluSx SINE Alu -24 288 1 4307 257 63 35 chr4 190108336 190110719 -12217628 - L1MD1 LINE L1 -917 5719 3233 4528 231 78 50 chr4 190110720 190111525 -12216822 - L1MD1 LINE L1 -4188 2352 1571 1860 123 0 81 chr4 190111525 190111859 -12216488 - AluSg SINE Alu -3 307 1 4528 231 78 50 chr4 190111859 190112230 -12216117 - L1MD1 LINE L1 -4969 1571 1212 1808 176 0 10 chr4 190112230 190112525 -12215822 - AluJb SINE Alu -18 294 3 4528 231 78 50 chr4 190112525 190113467 -12214880 - L1MD1 LINE L1 -5328 1212 1 22 56 0 0 chr4 190113826 190113862 -12214485 + AT_rich Low_complexity Low_complexity 1 36 0 581 0 14 0 chr4 190114836 190114905 -12213442 + (TG)n Simple_repeat Simple_repeat 1 70 0 22 35 0 0 chr4 190115234 190115263 -12213084 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr4 190115316 190115351 -12212996 + AT_rich Low_complexity Low_complexity 1 35 0 314 285 88 33 chr4 190115450 190115755 -12212592 + L1ME4a LINE L1 5562 5883 -238 33 43 0 0 chr4 190116571 190116618 -12211729 + AT_rich Low_complexity Low_complexity 1 47 0 1099 200 88 8 chr4 190117177 190117427 -12210920 + AluJb SINE Alu 34 303 -9 500 17 0 0 chr4 190117641 190117701 -12210646 - L1PA4 LINE L1 -8 6147 6088 572 234 51 0 chr4 190117991 190118166 -12210181 - MER53 DNA DNA -4 185 2 2092 88 7 7 chr4 190118614 190118929 -12209418 + AluSq SINE Alu 1 315 0 188 266 78 91 chr4 190119620 190119677 -12208670 - MIR SINE MIR -49 213 157 2223 92 0 7 chr4 190119677 190119970 -12208377 - AluSg SINE Alu -19 291 1 188 266 78 91 chr4 190119970 190120066 -12208281 - MIR SINE MIR -105 157 62 180 299 58 58 chr4 190120357 190120494 -12207853 - MER5A DNA MER1_type -45 144 8 709 285 50 0 chr4 190120665 190120844 -12207503 - MER5A DNA MER1_type -1 188 1 1608 182 3 41 chr4 190121131 190121449 -12206898 + AluJb SINE Alu 7 312 0 264 287 147 14 chr4 190121662 190121805 -12206542 - MIR SINE MIR -36 226 65 1921 134 69 0 chr4 190122054 190122344 -12206003 + AluSx SINE Alu 1 310 -2 23 92 0 0 chr4 190123039 190123104 -12205243 + AT_rich Low_complexity Low_complexity 1 65 0 29 47 0 0 chr4 190123157 190123200 -12205147 + AT_rich Low_complexity Low_complexity 1 43 0 205 349 15 0 chr4 190123685 190123751 -12204596 - MIR SINE MIR -65 143 77 509 110 0 0 chr4 190124339 190124412 -12203935 - AluJo SINE Alu -17 295 223 216 97 0 0 chr4 190124413 190124444 -12203903 + (ACTG)n Simple_repeat Simple_repeat 1 31 0 917 209 26 0 chr4 190124459 190124650 -12203697 - AluJo SINE Alu -93 219 24 25 51 0 0 chr4 190125082 190125121 -12203226 + AT_rich Low_complexity Low_complexity 1 39 0 1574 135 23 109 chr4 190127392 190127615 -12200732 - AluYb8 SINE Alu -1 317 133 1954 85 0 0 chr4 190127615 190127875 -12200472 - L1PA7 LINE L1 -4 6150 5891 1574 135 23 109 chr4 190127875 190127998 -12200349 - AluYb8 SINE Alu -185 133 1 2199 104 0 13 chr4 190128080 190128396 -12199951 - AluSx SINE Alu 0 312 1 21 36 0 0 chr4 190128541 190128569 -12199778 + AT_rich Low_complexity Low_complexity 1 28 0 615 286 17 48 chr4 190130156 190130387 -12197960 + MIR SINE MIR 21 244 -18 21 0 0 0 chr4 190130615 190130636 -12197711 + AT_rich Low_complexity Low_complexity 1 21 0 225 215 77 62 chr4 190130998 190131063 -12197284 + L2 LINE L2 3244 3309 -4 2605 11 0 0 chr4 190131272 190131554 -12196793 - AluY SINE Alu -6 305 24 3791 105 11 0 chr4 190131557 190132110 -12196237 - L1PA13 LINE L1 0 6163 5605 1358 21 21 14 chr4 190132654 190132941 -12195406 + (GAAA)n Simple_repeat Simple_repeat 1 289 0 2238 110 3 0 chr4 190132981 190133290 -12195057 + AluSp SINE Alu 1 310 -3 2167 119 0 0 chr4 190133539 190133834 -12194513 - AluSx SINE Alu -17 295 1 257 367 47 8 chr4 190134122 190134250 -12194097 + MIR SINE MIR 49 181 -81 609 319 91 54 chr4 190134378 190135062 -12193285 + L2 LINE L2 1706 2414 -900 2247 69 31 3 chr4 190135432 190135721 -12192626 - AluY SINE Alu -14 297 1 199 302 144 22 chr4 190135748 190135887 -12192460 + L2 LINE L2 3158 3313 0 328 312 60 67 chr4 190137277 190137559 -12190788 - L1ME4a LINE L1 -170 5951 5672 4319 33 0 2 chr4 190138444 190138965 -12189382 - L1PA3 LINE L1 -1094 5052 4533 7784 19 0 1 chr4 190138965 190140070 -12188277 + L1PA3 LINE L1 5049 6152 -3 2354 178 35 13 chr4 190140743 190141199 -12187148 + MER41B LTR ERV1 132 597 -38 576 263 51 65 chr4 190141476 190141693 -12186654 + MIR SINE MIR 31 244 -18 192 97 0 0 chr4 190141899 190141930 -12186417 + (A)n Simple_repeat Simple_repeat 1 31 0 22 0 0 0 chr4 190142092 190142114 -12186233 + AT_rich Low_complexity Low_complexity 1 22 0 766 293 85 43 chr4 190142590 190142989 -12185358 - LTR52 LTR ERVL -5 416 1 631 332 27 27 chr4 190145425 190145687 -12182660 - MIR SINE MIR 0 262 1 347 205 26 13 chr4 190145886 190145964 -12182383 + MLT1L LTR MaLR 537 615 0 878 78 0 0 chr4 190146815 190146931 -12181416 + L1PA7 LINE L1 6037 6152 -2 232 267 12 23 chr4 190146963 190147049 -12181298 - MLT1H1 LTR MaLR -8 547 463 2206 107 7 0 chr4 190147803 190148101 -12180246 + AluSq SINE Alu 1 300 -13 321 313 41 51 chr4 190148139 190148334 -12180013 - MIR SINE MIR -16 246 54 207 125 0 0 chr4 190148452 190148492 -12179855 + (A)n Simple_repeat Simple_repeat 1 40 0 1638 175 33 4 chr4 190150386 190150660 -12177687 - AluJo SINE Alu -30 282 1 2894 188 50 54 chr4 190150722 190151425 -12176922 + MER44D DNA MER2_type 1 700 -5 275 250 139 0 chr4 190151432 190151504 -12176843 - Tigger5 DNA MER2_type 0 2323 2242 * 356 216 14 0 chr4 190151498 190151572 -12176775 + Tigger5 DNA MER2_type 2246 2320 -3 278 275 0 12 chr4 190151572 190151651 -12176696 - Tigger5 DNA MER2_type -2245 78 1 3140 224 67 6 chr4 190152233 190153044 -12175303 + L1PB1 LINE L1 2 861 -6002 * 14651 191 15 11 chr4 190153043 190154061 -12174286 + L1PB1 LINE L1 2273 3285 -3582 2115 99 3 10 chr4 190154061 190154355 -12173992 + AluY SINE Alu 12 303 -8 14651 191 15 11 chr4 190154355 190157874 -12170473 + L1PB1 LINE L1 3285 6865 -2 22 0 0 0 chr4 190157874 190157896 -12170451 + AT_rich Low_complexity Low_complexity 1 22 0 2216 111 0 0 chr4 190158656 190158953 -12169394 - AluSx SINE Alu -11 301 5 323 345 93 10 chr4 190159149 190159343 -12169004 - MIR SINE MIR -4 258 49 261 194 57 16 chr4 190160058 190160128 -12168219 + MSTB LTR MaLR 185 275 -110 193 315 163 11 chr4 190160494 190160586 -12167761 - MIR3 SINE MIR -16 192 87 322 339 68 0 chr4 190160610 190160728 -12167619 - L2 LINE L2 -13 3259 3134 34 55 0 0 chr4 190162852 190162907 -12165440 + AT_rich Low_complexity Low_complexity 1 55 0 252 59 0 0 chr4 190164409 190164443 -12163904 + (CA)n Simple_repeat Simple_repeat 1 34 0 1260 232 7 7 chr4 190166057 190166384 -12161963 - L1P LINE L1 -799 5352 5027 830 279 39 14 chr4 190166498 190166781 -12161566 + MLT1C LTR MaLR 178 467 0 258 317 89 30 chr4 190167523 190167624 -12160723 - L2 LINE L2 -16 3256 3150 22 35 0 0 chr4 190169298 190169327 -12159020 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr4 190170189 190170225 -12158122 + AT_rich Low_complexity Low_complexity 1 36 0 31 26 0 0 chr4 190170565 190170603 -12157744 + AT_rich Low_complexity Low_complexity 1 38 0 230 0 0 32 chr4 190170883 190170914 -12157433 + (TA)n Simple_repeat Simple_repeat 2 31 0 200 194 0 0 chr4 190171712 190171748 -12156599 + (TATG)n Simple_repeat Simple_repeat 1 36 0 2469 170 20 18 chr4 190172947 190173447 -12154900 + L1MA3 LINE L1 5805 6305 0 2096 127 0 3 chr4 190173515 190173823 -12154524 - AluSx SINE Alu -5 307 1 2128 101 40 0 chr4 190175225 190175521 -12152826 + AluY SINE Alu 1 308 -3 22 56 0 0 chr4 190175786 190175822 -12152525 + AT_rich Low_complexity Low_complexity 1 36 0 1339 169 0 114 chr4 190176836 190177161 -12151186 + AluJo SINE Alu 3 290 -22 31 0 0 0 chr4 190177233 190177264 -12151083 + AT_rich Low_complexity Low_complexity 1 31 0 300 307 18 18 chr4 190177603 190177717 -12150630 - L2 LINE L2 -4 3309 3196 820 301 17 61 chr4 190178163 190178509 -12149838 - L2 LINE L2 -6 3307 2977 444 277 15 8 chr4 190178651 190178781 -12149566 + MIR SINE MIR 132 262 0 306 331 21 9 chr4 190178826 190179060 -12149287 - L1M4 LINE L1 -1825 4321 4085 1818 217 82 81 chr4 190179843 190180452 -12147895 + LTR38 LTR ERV1 1 556 0 23 0 0 0 chr4 190180563 190180586 -12147761 + AT_rich Low_complexity Low_complexity 1 23 0 2156 82 0 0 chr4 190180747 190181046 -12147301 - AluY SINE Alu 0 311 13 275 302 35 0 chr4 190182012 190182098 -12146249 - MIR SINE MIR -24 238 150 1953 129 0 0 chr4 190182942 190183252 -12145095 - AluSc SINE Alu 0 310 1 262 270 40 0 chr4 190183603 190183677 -12144670 + MLT1J LTR MaLR 233 309 -202 1952 126 11 0 chr4 190184316 190184601 -12143746 + AluSq SINE Alu 1 288 -25 23 0 0 0 chr4 190184601 190184624 -12143723 + AT_rich Low_complexity Low_complexity 1 23 0 282 275 92 9 chr4 190184631 190184740 -12143607 - MIR SINE MIR -74 188 71 21 71 0 0 chr4 190185312 190185354 -12142993 + AT_rich Low_complexity Low_complexity 1 42 0 2278 101 3 0 chr4 190185513 190185809 -12142538 + AluSp SINE Alu 1 297 -16 209 83 28 0 chr4 190186542 190186578 -12141769 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2355 124 11 21 chr4 190188461 190188840 -12139507 + THE1C LTR MaLR 1 375 0 1626 113 31 16 chr4 190189567 190189823 -12138524 + MLT2A1 LTR ERVL 1 260 -184 192 97 0 0 chr4 190191511 190191542 -12136805 + (A)n Simple_repeat Simple_repeat 1 31 0 1371 142 5 0 chr4 190191549 190191761 -12136586 + AluSq SINE Alu 86 298 -15 39 22 0 0 chr4 190191904 190191950 -12136397 + AT_rich Low_complexity Low_complexity 1 46 0 233 130 22 0 chr4 190192311 190192357 -12135990 + L1PB2 LINE L1 6098 6144 -7 21 82 0 0 chr4 190193150 190193199 -12135148 + AT_rich Low_complexity Low_complexity 1 49 0 2648 29 0 3 chr4 190194225 190194534 -12133813 - AluY SINE Alu -3 308 1 2037 104 0 0 chr4 190194846 190195165 -12133182 - AluSg SINE Alu 0 319 1 315 0 0 0 chr4 190195595 190195630 -12132717 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 23 92 0 0 chr4 190197131 190197196 -12131151 + AT_rich Low_complexity Low_complexity 1 65 0 413 307 60 6 chr4 190197628 190197794 -12130553 - MIR SINE MIR -30 232 58 22 35 0 0 chr4 190197827 190197856 -12130491 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 190198576 190198597 -12129750 + AT_rich Low_complexity Low_complexity 1 21 0 309 302 141 0 chr4 190199179 190199427 -12128920 + L1ME3A LINE L1 5664 5946 -224 288 244 37 12 chr4 190199811 190199893 -12128454 - MIR3 SINE MIR -6 202 119 2475 65 0 0 chr4 190200713 190201021 -12127326 + AluY SINE Alu 1 308 -3 40 0 0 0 chr4 190201808 190201848 -12126499 + AT_rich Low_complexity Low_complexity 1 40 0 296 214 0 0 chr4 190201848 190201904 -12126443 - AluJb SINE Alu -7 295 240 488 200 18 9 chr4 190201909 190202019 -12126328 - AluJb SINE Alu -165 147 37 228 259 17 0 chr4 190202691 190202749 -12125598 + MIR3 SINE MIR 141 199 -9 215 403 6 28 chr4 190202777 190202899 -12125448 - MER5B DNA MER1_type -6 172 54 806 124 12 25 chr4 190202899 190203060 -12125287 + L1MA4A LINE L1 6145 6303 0 215 403 6 28 chr4 190203060 190203113 -12125234 - MER5B DNA MER1_type -124 54 1 21 36 0 0 chr4 190204039 190204067 -12124280 + AT_rich Low_complexity Low_complexity 1 28 0 2304 76 13 0 chr4 190205704 190206007 -12122340 + AluY SINE Alu 1 307 -4 209 333 65 0 chr4 190206081 190206174 -12122173 - L2 LINE L2 0 3313 3215 24 67 0 0 chr4 190211857 190211902 -12116445 + AT_rich Low_complexity Low_complexity 1 45 0 35 0 0 0 chr4 190212506 190212541 -12115806 + AT_rich Low_complexity Low_complexity 1 35 0 307 281 9 35 chr4 190212745 190212859 -12115488 + MIR3 SINE MIR 15 125 -83 218 300 0 0 chr4 190213030 190213080 -12115267 + MIR3 SINE MIR 153 202 -6 1427 205 15 0 chr4 190213285 190213553 -12114794 + Tigger3(Golem) DNA MER2_type 1 272 -2757 375 348 190 31 chr4 190214835 190215816 -12112531 - L2 LINE L2 -364 2950 1814 2092 112 31 3 chr4 190216031 190216325 -12112022 - AluSx SINE Alu -10 302 1 2272 98 3 3 chr4 190217630 190217936 -12110411 - AluSp SINE Alu -7 306 1 9015 134 23 8 chr4 190219064 190221345 -12107002 - L1PA11 LINE L1 -6 6168 3823 2647 138 55 0 chr4 190221345 190221801 -12106546 + L1PA11 LINE L1 3310 3790 -2356 3564 202 29 37 chr4 190222082 190222225 -12106122 - L1MD2 LINE L1 -67 6552 6409 225 0 0 0 chr4 190222225 190222250 -12106097 + (TG)n Simple_repeat Simple_repeat 1 25 0 3564 202 29 37 chr4 190222250 190222319 -12106028 - L1MD2 LINE L1 -210 6409 6341 1847 169 17 31 chr4 190222319 190222669 -12105678 + MER7A DNA MER2_type 1 343 -3 3564 202 29 37 chr4 190222669 190223316 -12105031 - L1MD2 LINE L1 -278 6341 5699 525 169 42 70 chr4 190223355 190223389 -12104958 - L1MB5 LINE L1 -8 6166 6133 1914 140 0 3 chr4 190223389 190223689 -12104658 + AluSx SINE Alu 1 299 -13 525 169 42 70 chr4 190223689 190223796 -12104551 - L1MB5 LINE L1 -41 6133 6029 4288 254 38 40 chr4 190223854 190224758 -12103589 - L1MD2 LINE L1 -816 5590 4690 1308 203 41 31 chr4 190224758 190225048 -12103299 - AluJo SINE Alu -19 293 1 4288 254 38 40 chr4 190225048 190225774 -12102573 - L1MD2 LINE L1 -1716 4690 3964 298 160 0 132 chr4 190225783 190225889 -12102458 + L1MC4 LINE L1 6614 6705 -1337 670 297 81 6 chr4 190225913 190226246 -12102101 - L1MD2 LINE L1 -2457 3949 3592 1813 236 59 66 chr4 190226346 190226970 -12101377 - L1MD2 LINE L1 -5783 626 7 288 0 0 0 chr4 190227050 190227082 -12101265 + (CA)n Simple_repeat Simple_repeat 1 32 0 310 339 8 8 chr4 190227392 190227513 -12100834 + (TATG)n Simple_repeat Simple_repeat 4 124 0 382 352 60 14 chr4 190227646 190227862 -12100485 - MIR SINE MIR -12 250 25 36 23 0 0 chr4 190229055 190229098 -12099249 + AT_rich Low_complexity Low_complexity 1 43 0 396 302 272 18 chr4 190229173 190229511 -12098836 - L2 LINE L2 -4 3309 2886 195 237 43 115 chr4 190229577 190229716 -12098631 + MIR SINE MIR 124 252 -10 1169 187 0 18 chr4 190230343 190230568 -12097779 - AluJb SINE Alu -91 221 1 22 0 0 0 chr4 190230642 190230664 -12097683 + AT_rich Low_complexity Low_complexity 1 22 0 1621 194 77 56 chr4 190232117 190232328 -12096019 - MLT1D LTR MaLR -3 502 297 5532 142 12 17 chr4 190232328 190233256 -12095091 - MER49 LTR ERV1 0 923 1 1627 114 126 86 chr4 190233261 190233611 -12094736 - THE1B LTR MaLR 0 364 1 1621 194 77 56 chr4 190233611 190233861 -12094486 - MLT1D LTR MaLR -211 294 25 352 309 95 24 chr4 190234520 190234688 -12093659 - MER5A DNA MER1_type 0 189 10 216 324 78 49 chr4 190234733 190234835 -12093512 - L2 LINE L2 -5 3267 3163 354 342 59 16 chr4 190234948 190235135 -12093212 + L2 LINE L2 3114 3308 -5 425 103 15 0 chr4 190235571 190235639 -12092708 + (CA)n Simple_repeat Simple_repeat 2 70 0 213 182 0 0 chr4 190235959 190235992 -12092355 + (TG)n Simple_repeat Simple_repeat 2 34 0 246 363 91 28 chr4 190236041 190236394 -12091953 + L3 LINE CR1 1100 1474 -103 239 307 73 58 chr4 190237320 190237457 -12090890 - L2 LINE L2 -733 2581 2443 1162 107 6 34 chr4 190237635 190237813 -12090534 + AluSg/x SINE Alu 132 304 -6 261 146 0 0 chr4 190237908 190237956 -12090391 + (CA)n Simple_repeat Simple_repeat 1 48 0 29 70 0 0 chr4 190238738 190238795 -12089552 + AT_rich Low_complexity Low_complexity 1 57 0 360 0 0 0 chr4 190239756 190239796 -12088551 + (TTTTG)n Simple_repeat Simple_repeat 5 44 0 353 309 79 7 chr4 190240529 190240668 -12087679 + MIR SINE MIR 19 167 -95 324 0 0 0 chr4 190241001 190241037 -12087310 + (T)n Simple_repeat Simple_repeat 1 36 0 203 347 42 11 chr4 190241044 190241139 -12087208 + L2 LINE L2 28 125 -3189 613 300 100 28 chr4 190241140 190241554 -12086793 - LTR16A LTR ERVL 0 450 3 22 35 0 0 chr4 190242786 190242815 -12085532 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr4 190244330 190244355 -12083992 + AT_rich Low_complexity Low_complexity 1 25 0 717 283 0 51 chr4 190244562 190244902 -12083445 - AluSc SINE Alu 0 324 1 207 0 0 0 chr4 190246891 190246914 -12081433 + (A)n Simple_repeat Simple_repeat 1 23 0 340 154 0 26 chr4 190246947 190247013 -12081334 + GA-rich Low_complexity Low_complexity 4 69 -10 1926 143 151 3 chr4 190247013 190247385 -12080962 - MSTA LTR MaLR -1 427 1 340 154 0 26 chr4 190247385 190247396 -12080951 + GA-rich Low_complexity Low_complexity 69 79 0 22 35 0 0 chr4 190247952 190247981 -12080366 + AT_rich Low_complexity Low_complexity 1 29 0 2348 57 24 0 chr4 190248008 190248304 -12080043 - AluY SINE Alu -8 303 1 423 0 0 0 chr4 190248319 190248366 -12079981 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1117 127 12 6 chr4 190248398 190248571 -12079776 - AluSq SINE Alu -11 302 129 507 198 185 19 chr4 190249550 190249712 -12078635 + MER5A DNA MER1_type 1 189 0 211 357 0 0 chr4 190249944 190250000 -12078347 + L2 LINE L2 3145 3200 -72 418 318 88 13 chr4 190250209 190250448 -12077899 - L2 LINE L2 -245 3068 2812 24 67 0 0 chr4 190251491 190251536 -12076811 + AT_rich Low_complexity Low_complexity 1 45 0 463 248 44 29 chr4 190254110 190254247 -12074100 - MIR SINE MIR -63 199 61 313 262 92 35 chr4 190257251 190257392 -12070955 + MIR SINE MIR 104 252 -10 303 170 0 0 chr4 190258323 190258376 -12069971 + MER103 DNA DNA 35 87 -79 664 226 149 68 chr4 190261670 190262006 -12066341 - MLT1A1 LTR MaLR 0 365 3 1374 135 6 161 chr4 190262207 190262554 -12065793 - AluJb SINE Alu -19 293 1 499 290 165 9 chr4 190262776 190263000 -12065347 + MIR SINE MIR 4 262 0 2100 126 3 0 chr4 190264550 190264859 -12063488 - AluSx SINE Alu -2 310 1 2278 77 37 3 chr4 190264875 190265175 -12063172 - AluY SINE Alu -1 310 1 215 125 12 50 chr4 190315275 190315355 -12012992 + (TTTG)n Simple_repeat Simple_repeat 4 80 0 814 210 62 1 chr4 190315558 190315815 -12012532 + AluJb SINE Alu 1 299 -13 301 125 0 0 chr4 190316237 190316277 -12012070 - MER4B LTR ERV1 -72 538 499 212 388 12 0 chr4 190316418 190316503 -12011844 + L2 LINE L2 3187 3272 0 548 282 42 54 chr4 190316813 190317127 -12011220 + L1MC5 LINE L1 7292 7608 -353 2206 184 110 36 chr4 190317127 190317681 -12010666 + LTR49 LTR ERV1 1 595 0 548 282 42 54 chr4 190317681 190317754 -12010593 + L1MC5 LINE L1 7608 7680 -281 1719 146 17 47 chr4 190317754 190318055 -12010292 + AluJo SINE Alu 1 292 -20 548 282 42 54 chr4 190318055 190318184 -12010163 + L1MC5 LINE L1 7680 7803 -158 373 328 108 11 chr4 190318864 190319050 -12009297 - MIR SINE MIR -25 237 34 1509 194 25 4 chr4 190319166 190319468 -12008879 - AluJb SINE Alu 0 308 1 1343 137 189 121 chr4 190320248 190320810 -12007537 + MER4A LTR ERV1 1 600 0 28 0 0 0 chr4 190321055 190321083 -12007264 + AT_rich Low_complexity Low_complexity 1 28 0 519 211 11 0 chr4 190321090 190321185 -12007162 - AluJ/FLAM SINE Alu -216 96 1 436 251 196 10 chr4 190321941 190322140 -12006207 + MIR SINE MIR 11 246 -16 1075 215 44 5 chr4 190323409 190323614 -12004733 - MER20 DNA MER1_type -1 218 6 491 391 13 21 chr4 190324313 190324546 -12003801 + L3 LINE CR1 925 1155 -422 21 0 0 0 chr4 190324779 190324800 -12003547 + AT_rich Low_complexity Low_complexity 1 21 0 704 195 16 0 chr4 190324826 190324954 -12003393 - FLAM_C SINE Alu -3 130 1 414 0 0 0 chr4 190325295 190325341 -12003006 + (TA)n Simple_repeat Simple_repeat 1 46 0 186 103 0 0 chr4 190327308 190327337 -12001010 + (TTA)n Simple_repeat Simple_repeat 3 31 0 217 227 45 102 chr4 190327434 190327522 -12000825 - MIR3 SINE MIR -47 161 79 23 33 0 0 chr4 190327881 190327911 -12000436 + AT_rich Low_complexity Low_complexity 1 30 0 23 68 0 0 chr4 190328056 190328100 -12000247 + AT_rich Low_complexity Low_complexity 1 44 0 262 316 158 9 chr4 190328480 190328695 -11999652 - MIR SINE MIR -6 256 10 631 264 71 159 chr4 190328829 190329077 -11999270 + L2 LINE L2 2260 2528 -785 476 208 75 9 chr4 190329077 190329183 -11999164 - FRAM SINE Alu -63 113 1 631 264 71 159 chr4 190329183 190329392 -11998955 + L2 LINE L2 2528 2754 -559 1162 213 27 53 chr4 190329392 190329693 -11998654 + AluJo SINE Alu 1 293 -9 631 264 71 159 chr4 190329693 190330098 -11998249 + L2 LINE L2 2754 3105 -208 2957 217 37 2 chr4 190330098 190330725 -11997622 - MER82 DNA MER2_type -2 651 3 631 264 71 159 chr4 190330725 190330918 -11997429 + L2 LINE L2 3105 3313 0 217 231 67 19 chr4 190330935 190331039 -11997308 + (TGAA)n Simple_repeat Simple_repeat 1 109 0 493 283 131 0 chr4 190331384 190331529 -11996818 + MIR SINE MIR 73 236 -26 3410 177 64 70 chr4 190332125 190332971 -11995376 - MER21B LTR ERV1 -22 841 1 840 227 20 25 chr4 190332976 190333174 -11995173 - MLT1A2 LTR MaLR -21 353 157 390 115 0 0 chr4 190333174 190333235 -11995112 + (TTC)n Simple_repeat Simple_repeat 1 61 0 1937 156 6 16 chr4 190333237 190333552 -11994795 - AluSx SINE Alu 0 312 1 452 207 63 9 chr4 190333566 190333677 -11994670 - MLT1A2 LTR MaLR -220 145 29 1293 76 22 81 chr4 190334141 190334364 -11993983 + L1MA1 LINE L1 6093 6302 0 386 69 17 0 chr4 190334520 190334578 -11993769 + (TG)n Simple_repeat Simple_repeat 2 60 0 661 314 81 60 chr4 190334673 190335804 -11992543 - L1MEd LINE L1 -2587 3542 2286 2276 121 19 22 chr4 190335898 190336263 -11992084 + THE1B LTR MaLR 1 364 0 10833 108 31 2 chr4 190336263 190336709 -11991638 + THE1B-int LTR MaLR 1 432 -1148 1819 122 33 4 chr4 190336709 190336980 -11991367 + AluSx SINE Alu 19 297 -15 10833 108 31 2 chr4 190336980 190338065 -11990282 + THE1B-int LTR MaLR 432 1577 -3 2357 133 5 19 chr4 190338068 190338437 -11989910 + THE1B LTR MaLR 1 364 0 486 186 23 0 chr4 190338443 190338529 -11989818 - AluSg/x SINE Alu -12 297 210 1051 279 45 18 chr4 190339086 190339419 -11988928 - MLT1H1 LTR MaLR -5 550 209 3089 156 34 8 chr4 190339452 190339717 -11988630 + L1PA15 LINE L1 4871 5128 -1037 2669 29 0 3 chr4 190339717 190340028 -11988319 + AluY SINE Alu 1 310 -1 3089 156 34 8 chr4 190340028 190340670 -11987677 + L1PA15 LINE L1 5128 5791 -374 256 189 27 0 chr4 190340670 190340744 -11987603 + (TA)n Simple_repeat Simple_repeat 1 76 0 2403 121 30 0 chr4 190340777 190341149 -11987198 + L1PA15 LINE L1 5783 6165 0 543 237 30 7 chr4 190341151 190341286 -11987061 - MLT1H1 LTR MaLR -327 222 85 450 361 62 27 chr4 190341375 190341749 -11986598 - HAL1 LINE L1 -866 1641 1255 371 266 67 50 chr4 190341750 190342111 -11986236 - L1MEd LINE L1 -4970 1149 783 23 54 0 0 chr4 190342820 190342857 -11985490 + AT_rich Low_complexity Low_complexity 1 37 0 342 200 14 0 chr4 190343060 190343130 -11985217 + Tigger2 DNA MER2_type 1 71 -2647 734 225 25 0 chr4 190343173 190343333 -11985014 - MER8 DNA MER2_type -74 165 2 1068 169 14 61 chr4 190344743 190344956 -11983391 + AluJb SINE Alu 87 289 -23 742 215 32 21 chr4 190345219 190345405 -11982942 - MER5A DNA MER1_type -1 188 1 23 0 0 0 chr4 190345848 190345871 -11982476 + AT_rich Low_complexity Low_complexity 1 23 0 291 279 42 60 chr4 190346025 190346203 -11982144 + MIR SINE MIR 18 192 -65 21 36 0 0 chr4 190346509 190346537 -11981810 + AT_rich Low_complexity Low_complexity 1 28 0 381 43 0 0 chr4 190348626 190348673 -11979674 + (CA)n Simple_repeat Simple_repeat 2 48 0 1581 205 64 0 chr4 190349436 190349763 -11978584 + MER7A DNA MER2_type 1 346 0 1209 244 103 53 chr4 190349778 190349949 -11978398 + L1ME2 LINE L1 2180 2341 -3874 1714 166 33 0 chr4 190349949 190350101 -11978246 - AluJb SINE Alu -27 285 119 327 49 0 0 chr4 190350101 190350142 -11978205 + (TG)n Simple_repeat Simple_repeat 2 42 0 1714 166 33 0 chr4 190350142 190350260 -11978087 - AluJb SINE Alu -193 119 6 1209 244 103 53 chr4 190350260 190350817 -11977530 + L1ME2 LINE L1 2341 2923 -3292 1785 257 82 9 chr4 190350885 190351727 -11976620 + L1ME2 LINE L1 4970 5961 -272 246 256 61 0 chr4 190352187 190352269 -11976078 + L1MC4a LINE L1 6444 6530 -1278 335 214 65 0 chr4 190352338 190352506 -11975841 + (TA)n Simple_repeat Simple_repeat 2 180 0 465 306 105 75 chr4 190352522 190352894 -11975453 - LTR16A LTR ERVL -12 438 56 381 43 0 0 chr4 190352945 190352992 -11975355 + (CA)n Simple_repeat Simple_repeat 1 47 0 395 273 87 37 chr4 190352993 190353108 -11975239 + L1MC4 LINE L1 6702 6829 -1213 1497 204 7 13 chr4 190353108 190353412 -11974935 + AluJb SINE Alu 1 302 -10 395 273 87 37 chr4 190353412 190353457 -11974890 + L1MC4 LINE L1 6829 6870 -1172 306 271 67 45 chr4 190354090 190354437 -11973910 + L1MC/D LINE L1 5264 5615 -2193 1415 205 7 18 chr4 190354437 190354720 -11973627 + AluJo SINE Alu 1 280 -32 691 50 10 20 chr4 190354721 190354822 -11973525 + (TAGA)n Simple_repeat Simple_repeat 1 100 0 198 0 0 0 chr4 190354964 190354986 -11973361 + (T)n Simple_repeat Simple_repeat 1 22 0 225 83 0 0 chr4 190356197 190356233 -11972114 + (TA)n Simple_repeat Simple_repeat 1 36 0 1948 127 0 0 chr4 190356347 190356615 -11971732 + AluSq SINE Alu 1 268 -45 725 183 0 0 chr4 190356671 190356791 -11971556 - FLAM_C SINE Alu -19 124 5 23 33 0 0 chr4 190356794 190356824 -11971523 + AT_rich Low_complexity Low_complexity 1 30 0 1946 129 75 40 chr4 190359742 190360091 -11968256 - THE1B LTR MaLR -3 361 1 483 290 118 71 chr4 190360804 190361553 -11966794 + L1M4 LINE L1 2565 3348 -2798 565 322 139 31 chr4 190361866 190362435 -11965912 + L1M4 LINE L1 3724 4363 -1783 245 268 49 37 chr4 190362718 190362800 -11965547 + MLT1J LTR MaLR 211 293 -218 2198 106 0 0 chr4 190363329 190363635 -11964712 + AluSx SINE Alu 1 306 0 205 402 10 21 chr4 190364987 190365084 -11963263 + L2 LINE L2 2947 3042 -230 259 260 55 0 chr4 190365855 190365928 -11962419 + L2 LINE L2 3234 3310 -3 1777 162 0 14 chr4 190366315 190366605 -11961742 + AluJb SINE Alu 1 286 -26 2582 202 36 4 chr4 190367728 190368364 -11959983 - L1MA8 LINE L1 -4 6295 5600 1787 221 27 91 chr4 190368375 190369288 -11959059 - MER6 DNA MER2_type -4 861 1 1831 157 0 31 chr4 190369799 190370093 -11958254 - AluSx SINE Alu -27 285 1 350 314 50 7 chr4 190370130 190370270 -11958077 + L2 LINE L2 3168 3313 0 449 307 80 14 chr4 190371464 190371676 -11956671 + MIR SINE MIR 13 238 -24 436 366 17 16 chr4 190372344 190372533 -11955814 + MIR3 SINE MIR 7 198 -10 558 250 141 36 chr4 190374164 190374384 -11953963 - MIR SINE MIR 0 262 20 1892 158 49 23 chr4 190375641 190375989 -11952358 - THE1B LTR MaLR -7 357 1 736 313 179 13 chr4 190377970 190378522 -11949825 + L3 LINE CR1 308 951 -626 365 341 106 34 chr4 190378785 190379078 -11949269 + L3 LINE CR1 1110 1423 -154 1920 137 0 17 chr4 190380161 190380460 -11947887 - AluSx SINE Alu -18 294 1 230 0 33 0 chr4 190380880 190380910 -11947437 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr4 190380975 190380997 -11947350 + AT_rich Low_complexity Low_complexity 1 22 0 1972 100 0 8 chr4 190381203 190381464 -11946883 - AluSx SINE Alu -12 300 42 1589 247 61 27 chr4 190381592 190382103 -11946244 - MLT1F1 LTR MaLR -36 531 1 207 0 0 0 chr4 190382733 190382756 -11945591 + (A)n Simple_repeat Simple_repeat 1 23 0 516 323 49 32 chr4 190383005 190383829 -11944518 + L1ME LINE L1 939 1813 -4583 619 241 0 0 chr4 190384014 190384155 -11944192 - AluJb SINE Alu -9 303 163 1164 275 65 30 chr4 190384163 190385263 -11943084 + L1ME LINE L1 2015 3119 -3096 646 235 94 20 chr4 190385279 190385620 -11942727 - L1M4c LINE L1 -3965 2419 2054 378 0 0 0 chr4 190386598 190386640 -11941707 + (CA)n Simple_repeat Simple_repeat 2 43 0 291 246 0 0 chr4 190387036 190387101 -11941246 - MIR SINE MIR -112 150 86 399 260 47 68 chr4 190387382 190387634 -11940713 + MER34B LTR ERV1 1 248 -294 26 74 0 0 chr4 190387634 190387688 -11940659 + AT_rich Low_complexity Low_complexity 1 54 0 386 242 75 81 chr4 190387688 190388020 -11940327 + MER34 LTR ERV1 241 542 0 451 257 225 7 chr4 190388161 190388319 -11940028 + LTR28 LTR ERV1 1 139 -286 1386 239 92 72 chr4 190388501 190389084 -11939263 + LTR28 LTR ERV1 455 1020 0 1509 190 60 57 chr4 190390806 190391190 -11937157 + MLT1B LTR MaLR 6 390 0 2564 139 9 27 chr4 190391234 190391673 -11936674 - MER61C LTR ERV1 0 434 4 288 0 0 0 chr4 190392883 190392915 -11935432 + (A)n Simple_repeat Simple_repeat 1 32 0 23 0 0 0 chr4 190394579 190394602 -11933745 + AT_rich Low_complexity Low_complexity 1 23 0 2363 125 11 16 chr4 190395914 190396291 -11932056 + THE1C LTR MaLR 1 375 0 10031 119 39 7 chr4 190396291 190397822 -11930525 + THE1C-int LTR MaLR 1 1580 0 2074 172 8 16 chr4 190397822 190398200 -11930147 + THE1C LTR MaLR 1 375 0 22 35 0 0 chr4 190398963 190398992 -11929355 + AT_rich Low_complexity Low_complexity 1 29 0 498 340 105 22 chr4 190399468 190399877 -11928470 - L3 LINE CR1 -131 1446 1004 22 0 0 0 chr4 190399903 190399925 -11928422 + AT_rich Low_complexity Low_complexity 1 22 0 360 0 0 0 chr4 190402170 190402210 -11926137 + (CA)n Simple_repeat Simple_repeat 2 41 0 1138 201 51 44 chr4 190402357 190402651 -11925696 + MER67C LTR ERV1 3 298 -412 326 323 0 0 chr4 190402654 190402750 -11925597 + L1MC4 LINE L1 6614 6709 -1333 276 352 62 62 chr4 190403139 190403395 -11924952 + MIR SINE MIR 5 260 -2 2373 77 0 6 chr4 190405586 190405897 -11922450 + AluY SINE Alu 1 309 -2 2031 118 0 10 chr4 190406532 190406820 -11921527 - AluSx SINE Alu -4 308 24 207 271 52 42 chr4 190408432 190408528 -11919819 + L2 LINE L2 3149 3245 -68 548 188 70 39 chr4 190408611 190408739 -11919608 + FLAM_A SINE Alu 2 133 0 22 35 0 0 chr4 190409540 190409569 -11918778 + AT_rich Low_complexity Low_complexity 1 29 0 199 347 0 14 chr4 190411296 190411368 -11916979 + MIR SINE MIR 42 112 -150 213 303 11 45 chr4 190411501 190411590 -11916757 + MIR SINE MIR 55 140 -68 2021 142 0 0 chr4 190411598 190411914 -11916433 + AluSx SINE Alu 1 316 0 23 0 0 0 chr4 190412549 190412572 -11915775 + AT_rich Low_complexity Low_complexity 1 23 0 413 256 45 23 chr4 190412681 190412814 -11915533 + MIR SINE MIR 63 198 -64 252 315 99 18 chr4 190413056 190413167 -11915180 - L2 LINE L2 -4 3268 3149 213 307 62 45 chr4 190413243 190413389 -11914958 - MIR SINE MIR -71 137 20 2449 154 9 23 chr4 190413430 190413864 -11914483 + MSTC LTR MaLR 1 428 0 281 185 261 0 chr4 190414354 190414446 -11913901 - MIR SINE MIR -57 205 90 231 241 19 0 chr4 190415970 190416024 -11912323 - L2 LINE L2 -8 3264 3210 345 126 115 0 chr4 190417715 190417793 -11910554 + AluJ/FRAM SINE Alu 228 302 0 2003 114 0 7 chr4 190418902 190419174 -11909173 + AluSc SINE Alu 3 272 -37 1449 181 51 27 chr4 190419419 190419712 -11908635 - AluJo SINE Alu -12 300 1 2421 209 9 25 chr4 190421172 190421742 -11906605 + MER51C LTR ERV1 1 544 -96 2041 109 14 0 chr4 190421892 190422176 -11906171 + AluSg SINE Alu 7 294 -16 1714 167 53 7 chr4 190424184 190424540 -11903807 + LOR1b LTR ERV1 43 461 0 198 0 0 0 chr4 190424715 190424737 -11903610 + (T)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr4 190425213 190425235 -11903112 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 190425595 190425615 -11902732 + (A)n Simple_repeat Simple_repeat 1 20 0 193 290 202 8 chr4 190426607 190426731 -11901616 - MIR3 SINE MIR -26 182 35 23 68 0 0 chr4 190428259 190428303 -11900044 + AT_rich Low_complexity Low_complexity 1 44 0 2333 88 7 0 chr4 190429353 190429650 -11898697 + AluSx SINE Alu 1 299 -13 1334 138 55 5 chr4 190429905 190430123 -11898224 - MER30 DNA MER1_type -1 229 1 302 335 125 33 chr4 190430438 190430918 -11897429 + L2 LINE L2 2434 2957 -357 2189 102 7 0 chr4 190431140 190431444 -11896903 + AluSx SINE Alu 1 306 -6 233 330 40 10 chr4 190431444 190431540 -11896807 + L2 LINE L2 3171 3269 -3 306 261 222 17 chr4 190432121 190432301 -11896046 + L2 LINE L2 3076 3292 -21 1435 123 126 56 chr4 190432865 190433150 -11895197 - AluJb SINE Alu -7 305 1 250 226 128 45 chr4 190434052 190434185 -11894162 - MIR SINE MIR 0 262 119 2068 147 0 16 chr4 190435108 190435420 -11892927 + AluSx SINE Alu 1 307 -5 188 222 22 0 chr4 190435484 190435529 -11892818 - L2 LINE L2 -40 3232 3187 637 260 117 87 chr4 190435774 190436236 -11892111 + MER77 LTR ERV1 55 530 -75 256 217 50 0 chr4 190436237 190436297 -11892050 - MER8 DNA MER2_type -10 229 167 849 239 6 6 chr4 190436331 190436507 -11891840 - MER8 DNA MER2_type -63 176 1 314 202 69 95 chr4 190436507 190436681 -11891666 + MER21A LTR ERV1 529 744 -3 1730 116 4 0 chr4 190436959 190437227 -11891120 - L1PA12 LINE L1 -12 6156 5888 655 274 39 6 chr4 190437847 190438026 -11890321 - MIR SINE MIR -68 194 10 2221 110 0 0 chr4 190438257 190438547 -11889800 + AluSx SINE Alu 3 292 -20 249 245 0 0 chr4 190439318 190439371 -11888976 + GA-rich Low_complexity Low_complexity 3 55 0 333 227 0 20 chr4 190440375 190440525 -11887822 + (TA)n Simple_repeat Simple_repeat 2 148 0 26 88 0 0 chr4 190440597 190440665 -11887682 + AT_rich Low_complexity Low_complexity 1 68 0 1890 159 0 3 chr4 190441254 190441544 -11886803 - AluSx SINE Alu -23 289 1 22 0 0 0 chr4 190441835 190441857 -11886490 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 190442359 190442380 -11885967 + AT_rich Low_complexity Low_complexity 1 21 0 466 60 0 0 chr4 190442547 190442614 -11885733 - L1PA2 LINE L1 0 6155 6089 21 0 0 0 chr4 190442658 190442679 -11885668 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr4 190445553 190445585 -11882762 + AT_rich Low_complexity Low_complexity 1 32 0 200 276 20 20 chr4 190445725 190445823 -11882524 + T-rich Low_complexity Low_complexity 3 100 0 22 0 0 0 chr4 190446496 190446518 -11881829 + AT_rich Low_complexity Low_complexity 1 22 0 1288 176 12 82 chr4 190446981 190447311 -11881036 - AluJb SINE Alu -5 307 1 319 205 11 33 chr4 190447338 190447408 -11880939 - AluJ/FLAM SINE Alu -245 57 1 1642 82 29 120 chr4 190447737 190448053 -11880294 + AluSx SINE Alu 1 287 -25 331 253 0 11 chr4 190448232 190448323 -11880024 - MARNA DNA Mariner -101 485 396 * 539 234 0 8 chr4 190448249 190448377 -11879970 + MARNA DNA Mariner 117 243 -343 24 0 0 0 chr4 190448663 190448687 -11879660 + AT_rich Low_complexity Low_complexity 1 24 0 479 262 79 8 chr4 190449111 190449237 -11879110 - L2 LINE L2 -2 3270 3136 522 13 40 0 chr4 190449263 190449338 -11879009 + (TA)n Simple_repeat Simple_repeat 2 79 0 283 231 31 0 chr4 190449551 190449616 -11878731 + MIR SINE MIR 86 152 -110 22 0 0 0 chr4 190449654 190449676 -11878671 + AT_rich Low_complexity Low_complexity 1 22 0 219 139 0 0 chr4 190450384 190450420 -11877927 + (A)n Simple_repeat Simple_repeat 1 36 0 4078 96 4 0 chr4 190450837 190451389 -11876958 + MER41A LTR ERV1 1 554 0 1400 137 121 0 chr4 190455296 190455455 -11872892 - AluJo SINE Alu -21 291 153 345 24 0 0 chr4 190455455 190455497 -11872850 + (CA)n Simple_repeat Simple_repeat 2 43 0 1400 137 121 0 chr4 190455497 190455586 -11872761 - AluJo SINE Alu -159 153 13 514 268 70 28 chr4 190455653 190455795 -11872552 + MIR SINE MIR 42 189 -73 333 185 30 104 chr4 190456190 190456325 -11872022 - L1MC5 LINE L1 -35 7926 7802 311 239 60 48 chr4 190456346 190456513 -11871834 - L1MC5 LINE L1 -225 7736 7568 1308 151 50 4 chr4 190456714 190456953 -11871394 - L1PA16 LINE L1 -18 6148 5899 520 251 98 21 chr4 190457584 190457777 -11870570 + MIR SINE MIR 34 238 -24 297 0 0 0 chr4 190458321 190458354 -11869993 + (TA)n Simple_repeat Simple_repeat 1 33 0 664 204 61 66 chr4 190459902 190460098 -11868249 - MER3 DNA MER1_type -1 208 14 186 71 0 0 chr4 190460568 190460596 -11867751 + (TA)n Simple_repeat Simple_repeat 1 28 0 2012 104 0 24 chr4 190460611 190460900 -11867447 - AluSx SINE Alu -18 294 13 227 302 0 0 chr4 190461270 190461323 -11867024 - MER91 DNA MER1_type -77 63 11 311 358 89 21 chr4 190461734 190461924 -11866423 - L2 LINE L2 -167 3105 2903 852 264 41 126 chr4 190461986 190462494 -11865853 + MLT1J LTR MaLR 3 467 -44 2572 30 0 0 chr4 190464643 190464942 -11863405 + AluY SINE Alu 1 299 -12 292 261 0 14 chr4 190465334 190465403 -11862944 - L2 LINE L2 -1 3271 3204 194 356 19 48 chr4 190465955 190466059 -11862288 + MIR SINE MIR 32 132 -130 1466 198 14 3 chr4 190466378 190466690 -11861657 + AluJo SINE Alu 1 315 0 194 337 101 0 chr4 190467288 190467377 -11860970 + L2 LINE L2 3208 3305 -8 1457 212 39 61 chr4 190467797 190468156 -11860191 + MLT1A2 LTR MaLR 24 374 0 33 73 0 0 chr4 190468363 190468431 -11859916 + AT_rich Low_complexity Low_complexity 1 68 0 222 220 0 0 chr4 190469607 190469666 -11858681 + (TA)n Simple_repeat Simple_repeat 1 59 0 2204 109 0 7 chr4 190469857 190470161 -11858186 + AluSx SINE Alu 1 302 -10 192 264 115 58 chr4 190471037 190471124 -11857223 + L2 LINE L2 3180 3271 -1 30 27 0 0 chr4 190471955 190471992 -11856355 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr4 190472177 190472207 -11856140 + AT_rich Low_complexity Low_complexity 1 30 0 494 181 71 16 chr4 190472946 190473073 -11855274 - L1MA4 LINE L1 -2 6298 6165 2202 132 2 35 chr4 190473307 190473709 -11854638 - L1MA3 LINE L1 0 6305 5917 208 121 0 0 chr4 190474121 190474154 -11854193 + (TC)n Simple_repeat Simple_repeat 2 34 0 1666 151 0 40 chr4 190474972 190475292 -11853055 - AluJb SINE Alu 0 308 1 709 268 36 5 chr4 190475528 190475748 -11852599 - MIR SINE MIR -2 260 34 261 0 0 0 chr4 190476129 190476158 -11852189 + (CA)n Simple_repeat Simple_repeat 2 30 0 526 332 96 4 chr4 190476941 190477170 -11851177 - MIR SINE MIR -1 261 12 24 67 0 0 chr4 190477345 190477390 -11850957 + AT_rich Low_complexity Low_complexity 1 45 0 25 90 0 0 chr4 190477446 190477513 -11850834 + AT_rich Low_complexity Low_complexity 1 67 0 294 354 109 49 chr4 190479278 190479628 -11848719 + L2 LINE L2 2897 3267 -5 21 0 0 0 chr4 190480149 190480170 -11848177 + AT_rich Low_complexity Low_complexity 1 21 0 4316 193 38 7 chr4 190480170 190480989 -11847358 + MER21B LTR ERV1 15 858 -5 234 0 0 0 chr4 190483925 190483951 -11844396 + (CA)n Simple_repeat Simple_repeat 1 26 0 265 255 10 75 chr4 190483982 190484118 -11844229 + MIR SINE MIR 38 160 -66 185 267 0 50 chr4 190484120 190484180 -11844167 + L2 LINE L2 3216 3272 0 201 108 0 0 chr4 190484830 190484867 -11843480 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 2178 46 0 72 chr4 190484869 190485217 -11843130 + AluY SINE Alu 1 326 0 180 0 0 0 chr4 190485854 190485874 -11842473 + (TA)n Simple_repeat Simple_repeat 2 21 0 749 222 73 44 chr4 190485932 190486266 -11842081 - LTR37B LTR ERV1 -1 467 83 759 327 83 38 chr4 190486995 190487524 -11840823 + L2 LINE L2 2298 2850 -464 660 282 79 34 chr4 190487638 190487904 -11840443 + L2 LINE L2 3036 3313 0 2184 94 0 0 chr4 190488925 190489202 -11839145 + AluSx SINE Alu 1 277 -35 387 0 0 0 chr4 190489208 190489251 -11839096 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1894 148 0 10 chr4 190489605 190489896 -11838451 - AluSx SINE Alu -24 288 1 229 304 70 89 chr4 190490234 190490448 -11837899 - MIR SINE MIR 0 262 53 775 291 96 67 chr4 190490766 190491518 -11836829 - L2 LINE L2 -3 3310 2509 213 234 0 140 chr4 190491525 190491632 -11836715 - L2 LINE L2 -908 2406 2315 303 298 25 68 chr4 190491646 190491807 -11836540 - MER117 DNA MER1_type -42 155 2 1544 171 58 7 chr4 190491894 190492187 -11836160 - AluJo SINE Alu -2 310 3 358 316 26 0 chr4 190492818 190492935 -11835412 + L3 LINE CR1 719 838 -739 256 337 76 12 chr4 190493014 190493186 -11835161 + MIR3 SINE MIR 23 205 -3 2254 90 17 0 chr4 190495899 190496198 -11832149 - AluSc SINE Alu -5 304 1 1959 143 3 3 chr4 190497437 190497737 -11830610 + AluSx SINE Alu 12 311 -1 2240 109 0 10 chr4 190498145 190498458 -11829889 - AluSx SINE Alu -2 310 1 30 77 0 0 chr4 190498467 190498532 -11829815 + AT_rich Low_complexity Low_complexity 1 65 0 363 303 71 45 chr4 190498682 190498837 -11829510 + MIR3 SINE MIR 27 185 -23 466 252 92 44 chr4 190499553 190499803 -11828544 + MIR SINE MIR 1 262 0 22 25 0 25 chr4 190499803 190499817 -11828530 + AT_rich Low_complexity Low_complexity 1 14 -25 2552 27 0 0 chr4 190499817 190500111 -11828236 - AluY SINE Alu -17 294 1 22 25 0 25 chr4 190500111 190500136 -11828211 + AT_rich Low_complexity Low_complexity 14 39 0 921 235 20 0 chr4 190500928 190501124 -11827223 - MER3 DNA MER1_type -9 200 1 297 0 0 0 chr4 190501464 190501497 -11826850 + (TG)n Simple_repeat Simple_repeat 2 34 0 770 158 0 0 chr4 190501797 190501917 -11826430 + FLAM_C SINE Alu 3 122 -21 24 0 0 0 chr4 190503258 190503282 -11825065 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 190503748 190503773 -11824574 + AT_rich Low_complexity Low_complexity 1 25 0 414 0 0 0 chr4 190503930 190503976 -11824371 + (TA)n Simple_repeat Simple_repeat 1 46 0 300 197 8 47 chr4 190505920 190506047 -11822300 + (TA)n Simple_repeat Simple_repeat 2 123 0 365 258 20 33 chr4 190506492 190506643 -11821704 + (TATG)n Simple_repeat Simple_repeat 3 151 0 656 256 6 17 chr4 190509038 190509218 -11819129 + MER5B DNA MER1_type 1 178 0 772 225 62 8 chr4 190510223 190510417 -11817930 - MER20 DNA MER1_type 0 219 16 286 345 7 42 chr4 190510907 190511049 -11817298 - MIR3 SINE MIR -34 174 38 22 0 0 0 chr4 190511401 190511423 -11816924 + AT_rich Low_complexity Low_complexity 1 22 0 210 191 0 0 chr4 190511859 190511901 -11816446 + CT-rich Low_complexity Low_complexity 6 47 0 711 208 0 0 chr4 190512506 190512636 -11815711 + MER63A DNA MER1_type 44 173 -37 359 292 197 0 chr4 190512799 190512936 -11815411 + MER5A DNA MER1_type 26 189 0 413 242 194 6 chr4 190513755 190513920 -11814427 + MIR SINE MIR 49 244 -18 207 307 109 10 chr4 190513975 190514076 -11814271 + L2 LINE L2 1872 1982 -1332 217 260 178 0 chr4 190514283 190514356 -11813991 + MIR SINE MIR 55 140 -122 194 377 101 0 chr4 190515340 190515409 -11812938 - L2 LINE L2 -40 3232 3157 279 0 0 0 chr4 190516323 190516354 -11811993 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr4 190517412 190517433 -11810914 + AT_rich Low_complexity Low_complexity 1 21 0 755 103 86 0 chr4 190517447 190517564 -11810783 + FLAM_C SINE Alu 10 136 -7 220 345 83 77 chr4 190518888 190519355 -11808992 - L2 LINE L2 -1 3312 2843 2469 55 10 3 chr4 190519387 190519694 -11808653 - AluY SINE Alu -2 309 1 224 159 0 79 chr4 190520595 190520658 -11807689 + T-rich Low_complexity Low_complexity 1 58 0 1418 47 0 0 chr4 190521698 190521868 -11806479 - AluY SINE Alu 0 311 142 663 60 0 0 chr4 190521868 190521951 -11806396 - AluSc SINE Alu -226 83 1 367 352 8 0 chr4 190522208 190522333 -11806014 + L2 LINE L2 3188 3313 0 1823 118 7 0 chr4 190522447 190522743 -11805604 - MER6 DNA MER2_type 0 865 308 417 282 6 0 chr4 190522751 190522925 -11805422 + (CA)n Simple_repeat Simple_repeat 2 176 0 263 171 61 18 chr4 190522925 190523089 -11805258 + (CTCA)n Simple_repeat Simple_repeat 4 174 0 415 251 5 43 chr4 190523107 190523294 -11805053 + (CTCA)n Simple_repeat Simple_repeat 1 180 0 241 132 28 76 chr4 190523308 190523452 -11804895 + (CTCA)n Simple_repeat Simple_repeat 4 140 0 358 293 0 0 chr4 190523465 190523622 -11804725 + (CA)n Simple_repeat Simple_repeat 1 157 0 192 187 0 56 chr4 190523641 190523748 -11804599 + (CCCA)n Simple_repeat Simple_repeat 3 103 0 437 272 0 0 chr4 190523755 190523935 -11804412 + (CA)n Simple_repeat Simple_repeat 1 180 0 214 282 0 0 chr4 190523988 190524073 -11804274 + (CA)n Simple_repeat Simple_repeat 1 85 0 * 427 214 39 45 chr4 190524052 190524230 -11804117 + (CTCA)n Simple_repeat Simple_repeat 4 180 0 * 446 235 22 45 chr4 190524107 190524286 -11804061 + (CCCA)n Simple_repeat Simple_repeat 3 177 0 542 281 21 17 chr4 190524301 190524539 -11803808 - MER6 DNA MER2_type -623 242 4 2104 84 44 0 chr4 190524608 190524883 -11803464 + AluSx SINE Alu 1 287 -25 729 63 0 0 chr4 190524883 190524978 -11803369 + (GGAA)n Simple_repeat Simple_repeat 3 97 0 182 103 0 0 chr4 190526612 190526641 -11801706 + L2 LINE L2 3028 3056 -216 790 251 16 11 chr4 190527456 190527643 -11800704 + MER5A DNA MER1_type 2 189 0 781 168 0 0 chr4 190527651 190527788 -11800559 + AluSg/x SINE Alu 172 308 -2 574 346 44 0 chr4 190529339 190529567 -11798780 + MIR SINE MIR 7 244 -18 1288 50 0 0 chr4 190530241 190530400 -11797947 + L1PA3 LINE L1 5994 6152 -3 180 286 0 32 chr4 190531485 190531548 -11796799 + L2 LINE L2 3211 3271 -1 180 0 0 0 chr4 190533900 190533920 -11794427 + (T)n Simple_repeat Simple_repeat 1 20 0 347 253 121 12 chr4 190534249 190534415 -11793932 + Charlie7 DNA MER1_type 2427 2610 -2 2626 42 0 3 chr4 190535026 190535338 -11793009 - AluY SINE Alu 0 311 1 2049 124 0 0 chr4 190539077 190539392 -11788955 - AluY SINE Alu 0 315 1 308 217 198 32 chr4 190539424 190539581 -11788766 - MER2 DNA MER2_type -7 338 156 2870 175 26 12 chr4 190539582 190540158 -11788189 + LTR60 LTR ERV1 2 585 -1 631 217 72 20 chr4 190540300 190540452 -11787895 - MER2 DNA MER2_type -185 160 1 2783 145 17 0 chr4 190540835 190541311 -11787036 + L1MA5 LINE L1 5811 6294 -6 2023 90 0 45 chr4 190543000 190543105 -11785242 + AluSx SINE Alu 34 142 -170 2168 122 3 0 chr4 190543105 190543401 -11784946 + AluSx SINE Alu 4 300 -12 2023 90 0 45 chr4 190543401 190543585 -11784762 + AluSx SINE Alu 142 310 -2 1710 55 0 67 chr4 190544250 190544508 -11783839 + AluY SINE Alu 59 300 0 278 313 94 10 chr4 190544569 190544770 -11783577 - LTR33 LTR ERVL -149 372 155 1480 224 60 88 chr4 190544881 190544961 -11783386 - MER44D DNA MER2_type -1882 705 624 2266 88 0 0 chr4 190544961 190545284 -11783063 + AluSg SINE Alu 1 323 0 1480 224 60 88 chr4 190545284 190545925 -11782422 - MER44D DNA MER2_type -1963 624 4 371 287 17 26 chr4 190548856 190548971 -11779376 - MIR3 SINE MIR -90 118 5 240 35 0 0 chr4 190550097 190550126 -11778221 + (CAA)n Simple_repeat Simple_repeat 2 30 0 234 296 23 61 chr4 190552218 190552350 -11775997 + L2 LINE L2 2819 2945 -327 291 296 15 15 chr4 190552542 190552674 -11775673 + MER94 DNA DNA 1 132 -2 1571 197 39 32 chr4 190553302 190553612 -11774735 + AluJo SINE Alu 1 312 0 288 0 0 0 chr4 190553702 190553734 -11774613 + (TG)n Simple_repeat Simple_repeat 1 32 0 218 378 11 12 chr4 190554436 190554573 -11773774 - MIR SINE MIR -61 147 13 203 316 71 20 chr4 190554544 190554642 -11773705 + MIR SINE MIR 48 150 -58 * 618 310 23 31 chr4 190555631 190555889 -11772458 + MIR SINE MIR 6 261 -1 184 306 106 50 chr4 190556100 190556299 -11772048 - L2 LINE L2 -26 3287 3078 2194 104 0 13 chr4 190556458 190556766 -11771581 - AluSg SINE Alu -6 304 1 188 368 90 0 chr4 190556882 190557083 -11771264 - L2 LINE L2 -174 3139 2921 1591 156 167 11 chr4 190557219 190557585 -11770762 + MSTA LTR MaLR 1 423 -5 728 302 163 37 chr4 190557610 190558021 -11770326 - L2 LINE L2 -598 2716 2358 838 206 18 54 chr4 190558021 190558244 -11770103 - MER20 DNA MER1_type -4 215 1 728 302 163 37 chr4 190558244 190558537 -11769810 - L2 LINE L2 -956 2358 1923 445 330 52 70 chr4 190559553 190559901 -11768446 - L1ME LINE L1 -476 5645 5303 2359 125 11 16 chr4 190559901 190560278 -11768069 - THE1C LTR MaLR 0 375 1 445 330 52 70 chr4 190560278 190560317 -11768030 - L1ME LINE L1 -818 5303 5265 23 33 0 0 chr4 190560538 190560568 -11767779 + AT_rich Low_complexity Low_complexity 1 30 0 238 281 82 14 chr4 190560751 190560772 -11767575 + MER103 DNA DNA 4 22 -144 23 54 0 0 chr4 190560772 190560809 -11767538 + AT_rich Low_complexity Low_complexity 1 37 0 238 281 82 14 chr4 190560809 190560897 -11767450 + MER103 DNA DNA 22 159 -7 34 24 0 0 chr4 190561385 190561426 -11766921 + AT_rich Low_complexity Low_complexity 1 41 0 22 56 0 0 chr4 190562910 190562946 -11765401 + AT_rich Low_complexity Low_complexity 1 36 0 210 167 0 0 chr4 190562962 190562998 -11765349 + A-rich Low_complexity Low_complexity 1 36 0 413 274 88 0 chr4 190563189 190563291 -11765056 + L2 LINE L2 3158 3268 -4 479 273 155 0 chr4 190563726 190563887 -11764460 - MIR SINE MIR -13 249 64 24 0 0 0 chr4 190564422 190564446 -11763901 + AT_rich Low_complexity Low_complexity 1 24 0 377 213 43 11 chr4 190565192 190565286 -11763061 - MIR SINE MIR -72 190 94 635 215 7 22 chr4 190565381 190565516 -11762831 + FLAM_C SINE Alu 1 133 0 1258 206 36 11 chr4 190565529 190565806 -11762541 + AluJo SINE Alu 11 294 -18 21 0 0 0 chr4 190566098 190566119 -11762228 + AT_rich Low_complexity Low_complexity 1 21 0 326 311 74 26 chr4 190566596 190566786 -11761561 - L2 LINE L2 -493 2821 2623 26 0 0 0 chr4 190568146 190568172 -11760175 + AT_rich Low_complexity Low_complexity 1 26 0 2517 53 0 7 chr4 190568179 190568482 -11759865 + AluY SINE Alu 2 302 -9 731 226 0 0 chr4 190568487 190568633 -11759714 - FRAM SINE Alu -30 146 1 369 298 175 26 chr4 190569557 190569785 -11758562 - MIR SINE MIR 0 262 1 512 288 39 43 chr4 190570143 190570376 -11757971 + MIR SINE MIR 31 262 0 748 163 74 63 chr4 190570395 190570665 -11757682 - Charlie1b DNA MER1_type 0 523 251 578 230 93 12 chr4 190570682 190570843 -11757504 - Charlie1b DNA MER1_type -343 180 7 1920 127 0 34 chr4 190571625 190571946 -11756401 + AluSg SINE Alu 1 311 0 489 331 55 43 chr4 190572018 190572168 -11756179 - MIR SINE MIR 0 262 105 1998 112 29 0 chr4 190572168 190572493 -11755854 + AluSq SINE Alu 1 333 0 489 331 55 43 chr4 190572493 190572598 -11755749 - MIR SINE MIR -157 105 3 180 0 0 0 chr4 190572921 190572941 -11755406 + (TC)n Simple_repeat Simple_repeat 1 20 0 1548 193 4 0 chr4 190572954 190573228 -11755119 - AluJo SINE Alu -26 286 12 422 126 0 193 chr4 190573296 190573415 -11754932 + FLAM_C SINE Alu 22 117 -26 26 0 0 0 chr4 190573423 190573449 -11754898 + AT_rich Low_complexity Low_complexity 1 26 0 345 352 39 59 chr4 190573638 190574197 -11754150 + L2 LINE L2 2339 2886 -428 2266 88 0 3 chr4 190574485 190574781 -11753566 - AluSc SINE Alu -14 295 1 256 351 0 0 chr4 190574788 190574862 -11753485 + L2 LINE L2 3235 3308 -5 1593 189 3 7 chr4 190575037 190575334 -11753013 - AluJb SINE Alu -16 296 1 2037 201 22 0 chr4 190575389 190575798 -11752549 + MER47B DNA MER2_type 1 418 0 1219 258 54 37 chr4 190575810 190576217 -11752130 + MER21B LTR ERV1 393 806 -57 26 0 0 0 chr4 190576239 190576265 -11752082 + AT_rich Low_complexity Low_complexity 1 26 0 431 323 70 22 chr4 190576544 190576773 -11751574 + MIR SINE MIR 10 249 -13 199 286 36 0 chr4 190577495 190577551 -11750796 + L2 LINE L2 3160 3217 -96 345 100 0 0 chr4 190578781 190578831 -11749516 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 30 0 0 0 chr4 190578873 190578903 -11749444 + AT_rich Low_complexity Low_complexity 1 30 0 229 255 160 0 chr4 190579360 190579454 -11748893 + MIR SINE MIR 81 189 -73 2280 86 0 7 chr4 190579537 190579829 -11748518 + AluSq SINE Alu 1 290 -23 27 29 0 0 chr4 190580256 190580290 -11748057 + AT_rich Low_complexity Low_complexity 1 34 0 1958 163 21 3 chr4 190581151 190581476 -11746871 + MER7A DNA MER2_type 17 345 -1 582 243 84 40 chr4 190581929 190582180 -11746167 + L1ME1 LINE L1 5900 6161 -5 2197 114 20 0 chr4 190582650 190582956 -11745391 - AluSx SINE Alu 0 312 1 24 53 0 0 chr4 190583895 190583933 -11744414 + AT_rich Low_complexity Low_complexity 1 38 0 333 333 10 0 chr4 190584636 190584735 -11743612 - MER81 DNA DNA 0 114 15 357 24 0 0 chr4 190586160 190586202 -11742145 + (TG)n Simple_repeat Simple_repeat 2 43 0 2192 101 0 0 chr4 190587083 190587393 -11740954 - AluSx SINE Alu 0 310 1 227 276 69 0 chr4 190587674 190587732 -11740615 - MIR SINE MIR -149 113 52 260 344 63 16 chr4 190587888 190588023 -11740324 + MIR3 SINE MIR 29 169 -39 230 250 0 15 chr4 190589634 190589702 -11738645 + (CAT)n Simple_repeat Simple_repeat 3 69 0 866 320 82 49 chr4 190590459 190591441 -11736906 - L2 LINE L2 -86 3227 2212 313 123 4 0 chr4 190591441 190591503 -11736844 + L1PA8A LINE L1 5598 5662 -469 2185 137 41 28 chr4 190591538 190591932 -11736415 + L1MA3 LINE L1 5617 6015 -290 6938 10 0 1 chr4 190592042 190592828 -11735519 - L1PA3 LINE L1 -13 6142 5358 11062 27 4 1 chr4 190592828 190594161 -11734186 + L1PA3 LINE L1 4015 5351 -795 349 367 77 42 chr4 190594572 190594630 -11733717 - L1ME LINE L1 -386 5735 5680 1406 164 126 34 chr4 190594630 190594899 -11733448 - AluJo SINE Alu -16 296 3 349 367 77 42 chr4 190594899 190595126 -11733221 - L1ME LINE L1 -441 5680 5440 252 228 134 71 chr4 190595157 190595284 -11733063 + L2 LINE L2 3137 3271 -1 596 205 158 12 chr4 190595673 190595844 -11732503 - MER20 DNA MER1_type -4 215 20 242 376 145 32 chr4 190596103 190596385 -11731962 + L2 LINE L2 2951 3264 -8 1947 141 0 0 chr4 190596618 190596901 -11731446 + AluSx SINE Alu 1 283 -29 29 70 0 0 chr4 190596902 190596959 -11731388 + AT_rich Low_complexity Low_complexity 1 57 0 26 0 0 0 chr4 190597622 190597648 -11730699 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 190597863 190597885 -11730462 + AT_rich Low_complexity Low_complexity 1 22 0 236 318 88 47 chr4 190599752 190599900 -11728447 - MIR SINE MIR -28 234 81 2128 121 0 0 chr4 190599946 190600243 -11728104 + AluSq SINE Alu 1 297 -16 306 274 7 82 chr4 190601242 190601388 -11726959 - MLT1K LTR MaLR -13 575 441 713 288 106 8 chr4 190601421 190601685 -11726662 + MLT1J1 LTR MaLR 1 290 -156 2021 102 18 4 chr4 190602450 190602725 -11725622 + AluY SINE Alu 21 299 -12 204 97 0 0 chr4 190602736 190602767 -11725580 + (T)n Simple_repeat Simple_repeat 1 31 0 31 26 0 0 chr4 190602953 190602991 -11725356 + AT_rich Low_complexity Low_complexity 1 38 0 389 20 20 0 chr4 190603233 190603283 -11725064 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 583 346 102 7 chr4 190603310 190603613 -11724734 + L2 LINE L2 2960 3291 -22 503 60 0 96 chr4 190603973 190604056 -11724291 + U3 snRNA snRNA 1 75 -142 261 0 0 0 chr4 190604056 190604085 -11724262 + (A)n Simple_repeat Simple_repeat 1 29 0 192 77 0 0 chr4 190604150 190604176 -11724171 + (GGAA)n Simple_repeat Simple_repeat 2 27 0 842 230 9 53 chr4 190604278 190604504 -11723843 + MER20 DNA MER1_type 4 219 0 414 195 15 22 chr4 190604512 190604601 -11723746 - FLAM SINE Alu -11 122 45 243 206 27 68 chr4 190604628 190604701 -11723646 + L1MEd LINE L1 447 516 -5603 1306 232 33 6 chr4 190605940 190606272 -11722075 - MER58B DNA MER1_type 0 341 1 2053 110 3 0 chr4 190609102 190609419 -11718928 + AluSx SINE Alu 1 318 0 25 0 0 0 chr4 190610219 190610244 -11718103 + AT_rich Low_complexity Low_complexity 1 25 0 485 282 35 78 chr4 190610244 190610499 -11717848 - L2 LINE L2 -4 3309 3066 385 335 45 23 chr4 190610844 190611020 -11717327 - MIR SINE MIR -30 232 53 236 197 0 16 chr4 190611518 190611579 -11716768 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 260 351 137 8 chr4 190611818 190611949 -11716398 + MIR3 SINE MIR 18 165 -43 1005 113 3 5 chr4 190612735 190613037 -11715310 - THE1C LTR MaLR -5 427 1 832 156 0 0 chr4 190613048 190613176 -11715171 + FLAM_C SINE Alu 4 131 -12 2532 186 54 30 chr4 190613204 190613795 -11714552 - MER6A DNA MER2_type 0 605 1 27 29 0 0 chr4 190613891 190613925 -11714422 + AT_rich Low_complexity Low_complexity 1 34 0 1873 207 135 0 chr4 190614658 190615103 -11713244 + MLT1D LTR MaLR 1 505 0 3310 90 31 12 chr4 190615716 190616196 -11712151 - L1PA7 LINE L1 0 6154 5666 206 32 32 0 chr4 190616196 190616227 -11712120 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1819 117 0 4 chr4 190616227 190616474 -11711873 - AluSg SINE Alu -30 280 35 21205 136 11 75 chr4 190616474 190620329 -11708018 - L1P LINE L1 -2158 3988 430 234 0 0 0 chr4 190620329 190620355 -11707992 + (CAA)n Simple_repeat Simple_repeat 2 27 0 21205 136 11 75 chr4 190620355 190620752 -11707595 - L1P LINE L1 -5716 430 9 192 40 0 0 chr4 190621176 190621201 -11707146 + (T)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chr4 190621521 190621551 -11706796 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr4 190622663 190622712 -11705635 + AT_rich Low_complexity Low_complexity 1 49 0 361 336 133 52 chr4 190623008 190623338 -11705009 - L2 LINE L2 -1 3271 2915 375 23 0 0 chr4 190624385 190624429 -11703918 + (TG)n Simple_repeat Simple_repeat 2 45 0 526 313 60 10 chr4 190626235 190626436 -11701911 - MIR SINE MIR -6 256 46 31 0 0 0 chr4 190626633 190626664 -11701683 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 190627755 190627779 -11700568 + AT_rich Low_complexity Low_complexity 1 24 0 1488 237 37 30 chr4 190629317 190629759 -11698588 + MLT1C LTR MaLR 11 463 -4 2014 143 0 16 chr4 190630449 190630764 -11697583 + AluSx SINE Alu 3 312 0 1786 121 37 7 chr4 190631128 190631401 -11696946 - AluSx SINE Alu -7 305 25 1947 151 0 3 chr4 190631765 190632077 -11696270 - AluJb SINE Alu -1 311 1 377 223 35 69 chr4 190633558 190633760 -11694587 + L1ME LINE L1 5626 5820 -301 1768 154 52 96 chr4 190635426 190635945 -11692402 + LTR54B LTR ERV1 1 496 -2 22 0 0 0 chr4 190636206 190636228 -11692119 + AT_rich Low_complexity Low_complexity 1 22 0 326 202 0 124 chr4 190636355 190636444 -11691903 + Tigger5 DNA MER2_type 2 79 -2244 398 235 0 0 chr4 190636471 190636552 -11691795 + Tigger5 DNA MER2_type 2242 2322 -1 22 35 0 0 chr4 190636689 190636718 -11691629 + AT_rich Low_complexity Low_complexity 1 29 0 2146 122 0 10 chr4 190637754 190638066 -11690281 - AluSx SINE Alu -3 309 1 283 329 116 6 chr4 190638348 190638512 -11689835 + MIR SINE MIR 79 260 -2 181 265 0 0 chr4 190638570 190638604 -11689743 + L2 LINE L2 3256 3289 -24 1312 205 208 19 chr4 190639936 190640355 -11687992 + LTR54B LTR ERV1 1 498 0 491 99 0 0 chr4 190640881 190640962 -11687385 + L1PA16 LINE L1 6077 6157 -9 1401 175 6 118 chr4 190641603 190641952 -11686395 - AluJb SINE Alu 0 312 3 236 211 13 53 chr4 190643314 190643390 -11684957 + MIR SINE MIR 120 192 -70 1945 137 0 26 chr4 190644211 190644518 -11683829 - AluSx SINE Alu -13 299 1 266 241 241 0 chr4 190644832 190644911 -11683436 - MER5A DNA MER1_type -80 109 12 23 0 0 0 chr4 190645294 190645317 -11683030 + AT_rich Low_complexity Low_complexity 1 23 0 257 278 69 28 chr4 190645520 190645592 -11682755 + MIR SINE MIR 18 92 -116 26 0 0 0 chr4 190646671 190646697 -11681650 + AT_rich Low_complexity Low_complexity 1 26 0 1326 138 0 0 chr4 190647718 190647913 -11680434 + AluSg SINE Alu 1 195 -115 560 57 0 0 chr4 190647914 190647984 -11680363 + AluSg SINE Alu 64 133 -177 2223 118 0 0 chr4 190647984 190648288 -11680059 + AluSg SINE Alu 1 304 -6 773 246 95 30 chr4 190648496 190648801 -11679546 + L1ME3A LINE L1 5803 6127 -43 2352 86 3 0 chr4 190648964 190649310 -11679037 + AluY SINE Alu 1 347 0 2024 122 0 20 chr4 190649473 190649768 -11678579 - AluSp SINE Alu -24 289 1 552 209 47 58 chr4 190650050 190650241 -11678106 - MER5A DNA MER1_type 0 189 1 380 277 92 28 chr4 190650241 190650382 -11677965 + L2 LINE L2 3104 3253 -19 2139 128 10 0 chr4 190650414 190650719 -11677628 - AluSx SINE Alu -4 308 1 282 213 16 0 chr4 190650816 190650877 -11677470 - MIR SINE MIR -57 151 90 204 330 153 0 chr4 190651055 190651173 -11677174 - L2 LINE L2 -10 3262 3127 6904 55 3 1 chr4 190651377 190652776 -11675571 - L1PA6 LINE L1 -39 6115 4715 231 415 48 27 chr4 190653036 190653224 -11675123 + MER91A DNA MER1_type 5 196 0 12199 197 51 29 chr4 190654051 190654843 -11673504 - L1MB3 LINE L1 0 6419 5646 314 23 23 0 chr4 190654843 190654886 -11673461 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 1742 144 19 11 chr4 190654895 190655165 -11673182 - AluSx SINE Alu -40 272 1 12199 197 51 29 chr4 190655165 190659857 -11668490 - L1MB3 LINE L1 -780 5639 761 2507 173 131 74 chr4 190659857 190660318 -11668029 - MER39 LTR ERV1 -1 706 194 2457 71 7 3 chr4 190660318 190660627 -11667720 - AluSq SINE Alu -2 311 2 2507 173 131 74 chr4 190660627 190660831 -11667516 - MER39 LTR ERV1 -513 194 3 12199 197 51 29 chr4 190660831 190661606 -11666741 - L1MB3 LINE L1 -5658 761 4 23 33 0 0 chr4 190661635 190661665 -11666682 + AT_rich Low_complexity Low_complexity 1 30 0 2324 80 3 0 chr4 190662435 190662724 -11665623 + AluSc SINE Alu 1 290 -19 703 303 96 47 chr4 190662822 190663077 -11665270 - L2 LINE L2 -1 3312 3028 1861 130 60 0 chr4 190663077 190663361 -11664986 + AluSg SINE Alu 1 301 -9 703 303 96 47 chr4 190663361 190663511 -11664836 - L2 LINE L2 -285 3028 2887 1161 230 111 22 chr4 190663534 190663660 -11664687 - MER39 LTR ERV1 0 707 594 1966 182 41 8 chr4 190663660 190664050 -11664297 - MER57A LTR ERV1 0 403 1 1161 230 111 22 chr4 190664050 190664292 -11664055 - MER39 LTR ERV1 -113 594 306 2102 97 4 4 chr4 190664305 190664618 -11663729 - AluY SINE Alu 0 317 5 213 271 43 43 chr4 190664753 190664823 -11663524 - L2 LINE L2 -448 2866 2797 24 0 0 0 chr4 190665518 190665542 -11662805 + AT_rich Low_complexity Low_complexity 1 24 0 1026 276 83 29 chr4 190666598 190667079 -11661268 - LTR40a LTR ERVL -12 507 1 598 317 80 55 chr4 190667104 190667580 -11660767 + HAL1 LINE L1 975 1462 -1045 23 54 0 0 chr4 190667928 190667965 -11660382 + AT_rich Low_complexity Low_complexity 1 37 0 332 267 94 45 chr4 190668206 190668408 -11659939 + HAL1 LINE L1 2251 2462 -45 1946 180 28 50 chr4 190671063 190671524 -11656823 - LTR32 LTR ERVL -6 465 15 412 143 0 14 chr4 190671939 190672009 -11656338 + THE1C LTR MaLR 1 69 -306 3868 180 47 9 chr4 190672020 190672803 -11655544 - LTR1B LTR ERV1 -9 817 5 1637 133 27 20 chr4 190672807 190673108 -11655239 + THE1C LTR MaLR 72 374 -1 2090 56 4 15 chr4 190673480 190673749 -11654598 + AluY SINE Alu 30 295 -16 2163 196 31 43 chr4 190677292 190677832 -11650515 + MER34 LTR ERV1 8 541 -1 205 247 48 130 chr4 190679014 190679160 -11649187 + L3 LINE CR1 735 868 -709 627 340 90 26 chr4 190679246 190679667 -11648680 - L2 LINE L2 -40 3273 2826 228 67 0 0 chr4 190681436 190681466 -11646881 + (T)n Simple_repeat Simple_repeat 1 30 0 207 0 0 0 chr4 190682054 190682077 -11646270 + (TA)n Simple_repeat Simple_repeat 2 24 0 195 285 267 40 chr4 190682394 190682413 -11645934 + L2 LINE L2 2136 2149 -1165 2376 99 7 0 chr4 190682413 190682717 -11645630 - AluSx SINE Alu -6 306 1 195 285 267 40 chr4 190682717 190682974 -11645373 + L2 LINE L2 2149 2475 -839 329 308 9 9 chr4 190683003 190683110 -11645237 + L2 LINE L2 3174 3280 -33 423 303 130 31 chr4 190683174 190683428 -11644919 + L2 LINE L2 3033 3311 -2 21 0 0 0 chr4 190683452 190683473 -11644874 + AT_rich Low_complexity Low_complexity 1 21 0 330 313 60 11 chr4 190683685 190683867 -11644480 - MIR SINE MIR -60 202 12 256 305 40 20 chr4 190685954 190686105 -11642242 - MLT1L LTR MaLR -290 325 172 671 219 8 0 chr4 190687430 190687558 -11640789 + FRAM SINE Alu 17 145 -31 585 279 66 0 chr4 190687740 190688012 -11640335 + L1MEd LINE L1 32 321 -5798 195 300 100 0 chr4 190738140 190738200 -11590147 + L2 LINE L2 3192 3257 -15 22 35 0 0 chr4 190739909 190739938 -11588409 + AT_rich Low_complexity Low_complexity 1 29 0 3841 42 0 0 chr4 190740758 190741215 -11587132 + L1PA3 LINE L1 5679 6135 -20 333 0 0 0 chr4 190741218 190741255 -11587092 + (TAA)n Simple_repeat Simple_repeat 3 39 0 9526 193 54 16 chr4 190742676 190744878 -11583469 - L1 LINE L1 -1280 4866 2581 421 345 63 36 chr4 190744987 190745239 -11583108 - MLT1K LTR MaLR -266 322 64 341 145 79 40 chr4 190745670 190745746 -11582601 - MER116 DNA Mariner -1 79 1 28 0 0 0 chr4 190746166 190746194 -11582153 + AT_rich Low_complexity Low_complexity 1 28 0 30 59 0 0 chr4 190746223 190746274 -11582073 + AT_rich Low_complexity Low_complexity 1 51 0 267 31 0 0 chr4 190747060 190747092 -11581255 + (T)n Simple_repeat Simple_repeat 1 32 0 8054 3 0 0 chr4 190747108 190748054 -11580293 - L1HS LINE L1 0 6155 5210 204 97 0 0 chr4 190749665 190749696 -11578651 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 215 212 55 170 chr4 190749906 190750071 -11578276 + L2 LINE L2 2601 2746 -568 233 208 0 0 chr4 190750273 190750315 -11578032 + (TA)n Simple_repeat Simple_repeat 1 45 -8 1689 183 3 3 chr4 190750315 190750600 -11577747 - AluJb SINE Alu -27 285 1 233 208 0 0 chr4 190750600 190750610 -11577737 + (TA)n Simple_repeat Simple_repeat 44 53 0 26 0 0 0 chr4 190750612 190750638 -11577709 + AT_rich Low_complexity Low_complexity 1 26 0 1903 115 4 22 chr4 190750874 190751182 -11577165 - AluSg SINE Alu 0 312 10 280 361 151 14 chr4 190751340 190751625 -11576722 + L2 LINE L2 2942 3265 -7 352 305 39 16 chr4 190751680 190751808 -11576539 + MIR3 SINE MIR 24 154 -54 348 256 155 30 chr4 190752114 190752282 -11576065 + MIR SINE MIR 7 195 -67 219 246 0 0 chr4 190752862 190752923 -11575424 + A-rich Low_complexity Low_complexity 4 64 0 534 332 64 27 chr4 190753007 190753227 -11575120 + MIR SINE MIR 1 228 -34 21 57 0 0 chr4 190753399 190753434 -11574913 + AT_rich Low_complexity Low_complexity 1 35 0 378 0 0 0 chr4 190753509 190753551 -11574796 + (CA)n Simple_repeat Simple_repeat 2 43 0 2135 82 0 44 chr4 190753728 190753877 -11574470 - L1P LINE L1 -834 5312 5158 4931 37 0 0 chr4 190753877 190754467 -11573880 - L1PA5 LINE L1 0 6154 5565 2135 82 0 44 chr4 190754467 190754658 -11573689 - L1P LINE L1 -988 5158 4987 212 250 0 0 chr4 190755093 190755141 -11573206 + GA-rich Low_complexity Low_complexity 2 49 0 315 0 0 0 chr4 190755808 190755843 -11572504 + (CA)n Simple_repeat Simple_repeat 2 36 0 2118 110 0 7 chr4 190757075 190757367 -11570980 + AluSx SINE Alu 12 301 -11 25 31 0 0 chr4 190757576 190757608 -11570739 + AT_rich Low_complexity Low_complexity 1 32 0 837 242 65 94 chr4 190758989 190759373 -11568974 - MLT1A2 LTR MaLR -1 373 1 2024 27 12 4 chr4 190760013 190760271 -11568076 - L1P1 LINE L1 -600 5555 5296 654 239 82 16 chr4 190761483 190761667 -11566680 + Charlie1 DNA MER1_type 149 344 -2417 1473 213 51 0 chr4 190761677 190761991 -11566356 - MER58B DNA MER1_type -8 333 4 337 188 58 94 chr4 190761992 190762215 -11566132 + Charlie1 DNA MER1_type 365 579 -2182 280 198 23 58 chr4 190762222 190762308 -11566039 + Charlie1 DNA MER1_type 2679 2761 0 759 271 101 42 chr4 190762359 190762437 -11565910 + LTR16A LTR ERVL 52 124 -326 1938 192 54 5 chr4 190762437 190762880 -11565467 - MLT1C LTR MaLR -2 465 1 759 271 101 42 chr4 190762880 190763178 -11565169 + LTR16A LTR ERVL 124 450 0 185 279 0 0 chr4 190763487 190763530 -11564817 - L3 LINE CR1 -32 1545 1503 366 313 152 53 chr4 190763764 190764256 -11564091 - L2 LINE L2 -517 2797 2257 297 347 27 0 chr4 190764325 190764400 -11563947 - L2 LINE L2 -42 3230 3154 405 365 63 40 chr4 190764455 190764959 -11563388 + MLT1K LTR MaLR 71 586 -2 234 284 196 0 chr4 190765436 190765538 -11562809 - L3 LINE CR1 -445 1132 1011 31 44 0 0 chr4 190766143 190766188 -11562159 + AT_rich Low_complexity Low_complexity 1 45 0 447 224 75 40 chr4 190766436 190766610 -11561737 - MER34C LTR ERV1 0 585 406 1450 166 33 83 chr4 190766710 190767071 -11561276 - MER34B LTR ERV1 -211 354 12 900 120 0 0 chr4 190767478 190767603 -11560744 + AluSp/q SINE Alu 179 303 -10 228 111 0 0 chr4 190767663 190767699 -11560648 + (T)n Simple_repeat Simple_repeat 1 36 0 1655 183 5 76 chr4 190767983 190768376 -11559971 - MLT1A1 LTR MaLR 0 365 1 23 33 0 0 chr4 190768385 190768415 -11559932 + AT_rich Low_complexity Low_complexity 1 30 0 229 197 33 16 chr4 190769282 190769343 -11559004 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 1180 162 0 0 chr4 190769449 190769628 -11558719 - AluSx SINE Alu -133 179 1 12448 141 84 14 chr4 190769628 190771883 -11556464 - L1M1 LINE L1 -3957 3608 1196 2538 114 32 15 chr4 190771883 190772286 -11556061 - MSTA LTR MaLR 0 428 19 2956 175 14 0 chr4 190772291 190772789 -11555558 - L1M1 LINE L1 -6365 1200 696 845 225 39 30 chr4 190772891 190773122 -11555225 - MER74A LTR ERVL -228 330 98 2584 52 0 7 chr4 190773912 190774221 -11554126 + AluY SINE Alu 1 307 -4 29 60 0 0 chr4 190775560 190775610 -11552737 + AT_rich Low_complexity Low_complexity 1 50 0 192 125 0 0 chr4 190776527 190776559 -11551788 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2313 151 34 39 chr4 190776717 190777153 -11551194 + Tigger2a DNA MER2_type 1 434 0 1332 170 89 46 chr4 190777690 190777972 -11550375 + AluJb SINE Alu 1 294 -18 1855 152 121 0 chr4 190778395 190778784 -11549563 + L1MA8 LINE L1 5853 6288 -3 735 283 44 0 chr4 190779073 190779278 -11549069 - MIR SINE MIR -10 252 39 2053 181 112 24 chr4 190779389 190779843 -11548504 + L1M1 LINE L1 9 502 -7063 1867 161 13 3 chr4 190780610 190780914 -11547433 + AluJo SINE Alu 1 307 -5 2749 7 20 0 chr4 190781181 190781486 -11546861 + AluYa5 SINE Alu 1 311 0 190 250 33 17 chr4 190781955 190782015 -11546332 + L2 LINE L2 3200 3260 -12 2071 125 10 3 chr4 190782018 190782314 -11546033 + AluSx SINE Alu 1 298 -14 223 351 53 0 chr4 190783340 190783434 -11544913 + MIR SINE MIR 157 255 -7 22 0 0 0 chr4 190783557 190783579 -11544768 + AT_rich Low_complexity Low_complexity 1 22 0 196 289 221 10 chr4 190786078 190786182 -11542165 + L2 LINE L2 3147 3272 0 320 326 192 0 chr4 190787722 190787946 -11540401 - L1ME LINE L1 -295 5826 5560 207 188 14 58 chr4 190788161 190788230 -11540117 + T-rich Low_complexity Low_complexity 4 69 0 25 31 0 0 chr4 190788303 190788335 -11540012 + AT_rich Low_complexity Low_complexity 1 32 0 271 328 25 25 chr4 190789964 190790083 -11538264 + L2 LINE L2 2744 2862 -452 391 306 40 96 chr4 190790222 190790546 -11537801 + L2 LINE L2 3008 3313 0 184 286 20 0 chr4 190790760 190790809 -11537538 - L2 LINE L2 -50 3222 3173 1534 186 137 23 chr4 190790869 190791255 -11537092 - MSTB1 LTR MaLR -2 430 1 1580 213 3 0 chr4 190791368 190791678 -11536669 - MER7A DNA MER2_type -1 345 37 1833 175 36 33 chr4 190791834 190792223 -11536124 + MLT1B LTR MaLR 1 390 0 1725 180 41 14 chr4 190792901 190793263 -11535084 - MLT1B LTR MaLR -18 372 1 259 398 102 5 chr4 190793436 190793652 -11534695 + MIR SINE MIR 26 262 0 2006 127 3 7 chr4 190793973 190794285 -11534062 + AluSx SINE Alu 1 311 0 798 57 40 28 chr4 190795191 190795368 -11532979 + (TA)n Simple_repeat Simple_repeat 2 180 0 203 391 23 16 chr4 190796248 190796376 -11531971 + MER5A DNA MER1_type 59 187 -2 206 247 247 14 chr4 190796555 190796628 -11531719 - L2 LINE L2 0 3313 3224 218 290 81 40 chr4 190796874 190796998 -11531349 - MIR SINE MIR -77 185 57 440 260 147 17 chr4 190797955 190798132 -11530215 - MER3 DNA MER1_type -1 208 9 2743 9 0 19 chr4 190798613 190798929 -11529418 + AluYa8 SINE Alu 1 310 0 2282 100 0 3 chr4 190798937 190799247 -11529100 + AluY SINE Alu 1 309 -2 356 329 37 37 chr4 190800501 190800662 -11527685 + MIR3 SINE MIR 42 202 -6 326 299 51 0 chr4 190801487 190801604 -11526743 + L2 LINE L2 1553 1675 -1639 2017 123 11 0 chr4 190801623 190801907 -11526440 - AluSx SINE Alu -23 289 3 805 300 149 28 chr4 190801926 190802639 -11525708 + L2 LINE L2 1850 2648 -666 2688 33 0 0 chr4 190802738 190803045 -11525302 - AluY SINE Alu -4 307 1 423 323 63 20 chr4 190803231 190803485 -11524862 - L1M4 LINE L1 -979 5167 4903 574 311 85 26 chr4 190803536 190803925 -11524422 - L1M4 LINE L1 -2919 3227 2816 2823 60 0 5 chr4 190804442 190804810 -11523537 + L1PA7 LINE L1 5782 6147 -7 384 344 91 16 chr4 190804915 190805225 -11523122 + L2 LINE L2 2687 3030 -242 2278 219 56 8 chr4 190805230 190806014 -11522333 - MER45B DNA AcHobo 0 1040 176 255 374 36 52 chr4 190806819 190807056 -11521291 + L2 LINE L2 2539 2778 -536 680 168 44 0 chr4 190807056 190807169 -11521178 + FLAM_C SINE Alu 1 118 -15 459 0 0 0 chr4 190807173 190807224 -11521123 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 255 374 36 52 chr4 190807224 190807310 -11521037 + L2 LINE L2 2781 2862 -452 744 257 88 15 chr4 190809688 190809949 -11518398 - LTR16C LTR ERVL -39 452 173 187 344 0 16 chr4 190811123 190811187 -11517160 + MIR SINE MIR 85 147 -61 250 346 84 34 chr4 190812010 190812189 -11516158 + MIR3 SINE MIR 3 190 -18 384 302 41 35 chr4 190812592 190812764 -11515583 - MIR SINE MIR -10 252 80 2152 96 3 23 chr4 190813390 190813692 -11514655 - AluSc SINE Alu -13 296 1 54 0 0 0 chr4 190813712 190813766 -11514581 + AT_rich Low_complexity Low_complexity 1 54 0 2196 110 7 3 chr4 190813841 190814142 -11514205 - AluSp SINE Alu -11 302 1 25 0 0 50 chr4 190814157 190814173 -11514174 + AT_rich Low_complexity Low_complexity 1 16 -22 3393 48 2 33 chr4 190814173 190815046 -11513301 - SVA Other Other 0 1386 552 25 0 0 50 chr4 190815046 190815068 -11513279 + AT_rich Low_complexity Low_complexity 16 38 0 225 330 57 11 chr4 190820899 190820987 -11507360 - L2 LINE L2 -23 3249 3158 181 229 82 33 chr4 190821482 190821543 -11506804 - L2 LINE L2 -86 3227 3164 26 0 0 0 chr4 190822217 190822243 -11506104 + AT_rich Low_complexity Low_complexity 1 26 0 1668 222 21 38 chr4 190823643 190824062 -11504285 - MLT2D LTR ERVL 0 414 3 23 33 0 0 chr4 190824073 190824103 -11504244 + AT_rich Low_complexity Low_complexity 1 30 0 29 78 0 0 chr4 190824274 190824338 -11504009 + AT_rich Low_complexity Low_complexity 1 64 0 244 325 13 13 chr4 190824515 190824592 -11503755 + MIR SINE MIR 9 85 -177 421 211 175 9 chr4 190825543 190825657 -11502690 + L2 LINE L2 3179 3311 -2 273 274 34 86 chr4 190827795 190827912 -11500435 + MER5A DNA MER1_type 79 189 0 10647 140 27 11 chr4 190828275 190830011 -11498336 - Tigger2 DNA MER2_type -89 2629 867 908 279 222 20 chr4 190831351 190831904 -11496443 + L2 LINE L2 38 702 -2612 952 234 71 183 chr4 190831924 190832695 -11495652 + L2 LINE L2 1538 2222 -1092 934 241 60 98 chr4 190833471 190833786 -11494561 - MLT1D LTR MaLR -3 502 162 23 33 0 0 chr4 190835706 190835736 -11492611 + AT_rich Low_complexity Low_complexity 1 30 0 630 0 0 0 chr4 190836112 190836182 -11492165 + (TG)n Simple_repeat Simple_repeat 2 71 0 2275 166 34 0 chr4 190836182 190836591 -11491756 - MSTA LTR MaLR -3 425 3 922 280 124 11 chr4 190836999 190837435 -11490912 + L1PBa LINE L1 6 490 -6373 248 235 0 0 chr4 190837542 190837593 -11490754 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1208 118 0 99 chr4 190837671 190837883 -11490464 - AluJo SINE Alu -27 285 95 296 216 91 0 chr4 190838304 190838392 -11489955 - MER53 DNA DNA 0 189 94 24 0 0 0 chr4 190839529 190839553 -11488794 + AT_rich Low_complexity Low_complexity 1 24 0 183 322 0 44 chr4 190839582 190839672 -11488675 + L2 LINE L2 3222 3307 -6 1206 26 0 13 chr4 190840669 190840820 -11487527 + L1PA6 LINE L1 6004 6152 -2 2130 103 0 0 chr4 190841684 190841990 -11486357 + AluSx SINE Alu 1 306 0 22 56 0 0 chr4 190842630 190842666 -11485681 + AT_rich Low_complexity Low_complexity 1 36 0 336 238 0 0 chr4 190843385 190843465 -11484882 + L1 LINE L1 5000 5079 -1067 1915 140 0 27 chr4 190843599 190843899 -11484448 + AluSx SINE Alu 1 292 -20 432 178 136 108 chr4 190844313 190844644 -11483703 + MSTD LTR MaLR 1 396 0 189 329 89 34 chr4 190844763 190844909 -11483438 - MIR SINE MIR -16 246 93 284 209 11 0 chr4 190846029 190846120 -11482227 + (TA)n Simple_repeat Simple_repeat 1 92 0 24 96 0 0 chr4 190847742 190847815 -11480532 + AT_rich Low_complexity Low_complexity 1 73 0 22 0 0 0 chr4 190847915 190847937 -11480410 + AT_rich Low_complexity Low_complexity 1 22 0 996 116 7 0 chr4 190848334 190848499 -11479848 - AluSc SINE Alu 0 309 144 391 113 0 0 chr4 190848586 190848639 -11479708 - THE1C LTR MaLR -119 256 204 1090 79 7 0 chr4 190848640 190848779 -11479568 - AluSc SINE Alu -169 140 1 689 215 11 51 chr4 190849038 190849215 -11479132 + MLT1A2 LTR MaLR 1 170 -204 3941 152 38 14 chr4 190849318 190850049 -11478298 - Tigger2 DNA MER2_type -1969 749 1 247 308 143 33 chr4 190850063 190850245 -11478102 - L2 LINE L2 -453 2861 2660 329 271 115 51 chr4 190851845 190852218 -11476129 - L1ME4a LINE L1 -86 6035 5639 601 245 19 0 chr4 190852419 190852574 -11475773 - MER103 DNA DNA -6 160 3 330 179 17 46 chr4 190852780 190852886 -11475461 - L1MD2 LINE L1 -89 6098 5977 1061 289 199 45 chr4 190852886 190853388 -11474959 + L2 LINE L2 613 1036 -2278 2207 112 0 0 chr4 190853388 190853684 -11474663 + AluSx SINE Alu 1 296 -16 1061 289 199 45 chr4 190853684 190853921 -11474426 + L2 LINE L2 1036 1466 -1848 310 289 26 0 chr4 190853929 190854005 -11474342 + L2 LINE L2 2581 2658 -656 394 306 103 9 chr4 190854174 190854457 -11473890 - L2 LINE L2 0 3313 2940 347 289 44 18 chr4 190854513 190854627 -11473720 - L2 LINE L2 -547 2767 2651 1634 166 10 13 chr4 190854649 190854951 -11473396 - AluJo SINE Alu -6 306 6 439 299 274 0 chr4 190856070 190856274 -11472073 + MIR SINE MIR 3 262 0 212 311 70 75 chr4 190856723 190856964 -11471383 - L2 LINE L2 -474 2840 2601 374 292 69 42 chr4 190857014 190857239 -11471108 - MIR SINE MIR -27 235 3 268 319 57 53 chr4 190857460 190857742 -11470605 - L2 LINE L2 -1240 2074 1792 183 329 50 50 chr4 190857965 190858126 -11470221 - L2 LINE L2 -1864 1450 1290 343 364 57 26 chr4 190858148 190858376 -11469971 - MIR SINE MIR 0 262 28 2264 85 3 23 chr4 190858543 190858848 -11469499 + AluSx SINE Alu 1 299 -13 200 309 36 12 chr4 190859055 190859139 -11469208 + L3b LINE CR1 1305 1390 -193 299 282 148 0 chr4 190859280 190859422 -11468925 + MIR SINE MIR 65 227 -35 14433 197 30 6 chr4 190860678 190866257 -11462090 + L1PB1 LINE L1 934 6864 -3 22 35 0 0 chr4 190866595 190866624 -11461723 + AT_rich Low_complexity Low_complexity 1 29 0 600 219 16 8 chr4 190867433 190867556 -11460791 - Tigger2 DNA MER2_type -2 2716 2593 1074 132 16 74 chr4 190867557 190867799 -11460548 - Tigger2 DNA MER2_type -2402 316 89 408 323 72 6 chr4 190868365 190868532 -11459815 - MIR SINE MIR -74 188 11 564 212 15 23 chr4 190868725 190868857 -11459490 - MER20 DNA MER1_type 0 219 89 22 0 0 0 chr4 190871896 190871918 -11456429 + AT_rich Low_complexity Low_complexity 1 22 0 191 229 21 21 chr4 190871928 190871976 -11456371 - L2 LINE L2 -5 3267 3220 1788 242 41 9 chr4 190872502 190872944 -11455403 - LTR40b LTR ERVL 0 462 7 208 331 216 7 chr4 190873430 190873569 -11454778 + MIR3 SINE MIR 25 192 -16 271 283 75 38 chr4 190873734 190873840 -11454507 - MER117 DNA MER1_type -86 111 2 241 349 83 70 chr4 190874230 190874461 -11453886 - L2 LINE L2 -463 2851 2625 1577 173 6 70 chr4 190874461 190874791 -11453556 + AluJo SINE Alu 1 309 -3 241 349 83 70 chr4 190874791 190875158 -11453189 - L2 LINE L2 -689 2625 2245 283 314 99 6 chr4 190875422 190875594 -11452753 - MLT1L LTR MaLR -6 609 422 213 299 103 35 chr4 190878339 190878426 -11449921 - MIR SINE MIR 0 262 170 506 267 52 37 chr4 190878837 190879028 -11449319 - MIR SINE MIR -57 205 12 262 200 31 0 chr4 190879648 190879713 -11448634 + (TA)n Simple_repeat Simple_repeat 2 68 0 24 53 0 0 chr4 190880196 190880234 -11448113 + AT_rich Low_complexity Low_complexity 1 38 0 2751 13 0 3 chr4 190880251 190880563 -11447784 + AluYa5 SINE Alu 1 311 0 219 163 23 0 chr4 190881496 190881539 -11446808 + (CA)n Simple_repeat Simple_repeat 2 45 0 180 111 0 0 chr4 190931805 190931832 -11396515 + (T)n Simple_repeat Simple_repeat 1 27 0 24 53 0 0 chr4 190932951 190932989 -11395358 + AT_rich Low_complexity Low_complexity 1 38 0 2613 193 13 9 chr4 190933314 190933831 -11394516 - MER41B LTR ERV1 -12 597 99 964 148 11 33 chr4 190933862 190934044 -11394303 - AluSg/x SINE Alu -4 305 128 695 140 9 0 chr4 190934044 190934158 -11394189 - MER41B LTR ERV1 -520 115 1 310 299 26 0 chr4 190934375 190934452 -11393895 - MER2 DNA MER2_type 0 345 267 621 159 172 40 chr4 190934503 190934567 -11393780 - MER2 DNA MER2_type -174 171 117 1693 181 42 33 chr4 190934567 190934926 -11393421 + THE1B LTR MaLR 1 362 -2 621 159 172 40 chr4 190934926 190935012 -11393335 - MER2 DNA MER2_type -228 117 1 1404 210 55 37 chr4 190935475 190935823 -11392524 + MLT1A1 LTR MaLR 1 354 -11 1419 213 72 66 chr4 190936484 190936939 -11391408 - MLT1C LTR MaLR 0 467 10 331 310 129 0 chr4 190937010 190937181 -11391166 + MLT1L LTR MaLR 423 615 0 21 0 0 0 chr4 190937290 190937311 -11391036 + AT_rich Low_complexity Low_complexity 1 21 0 510 308 68 0 chr4 190939202 190939348 -11388999 + MIR SINE MIR 18 173 -89 189 0 0 0 chr4 190939445 190939466 -11388881 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 188 277 0 0 chr4 190940781 190940828 -11387519 - L2 LINE L2 -1 3312 3266 1398 157 0 5 chr4 190940830 190941053 -11387294 + AluSg/x SINE Alu 89 310 -2 21 82 0 0 chr4 190941325 190941374 -11386973 + AT_rich Low_complexity Low_complexity 1 49 0 468 229 25 0 chr4 190942495 190942613 -11385734 - MER57A LTR ERV1 0 403 283 877 259 45 17 chr4 190943140 190943430 -11384917 - MER93b LTR ERV1 -63 310 13 354 257 0 0 chr4 190943432 190943537 -11384810 + (TA)n Simple_repeat Simple_repeat 1 105 0 1500 103 5 0 chr4 190943539 190943753 -11384594 - MER41A LTR ERV1 -305 249 35 320 218 0 0 chr4 190943763 190943841 -11384506 + L1MC4 LINE L1 6619 6696 -1346 2388 74 3 13 chr4 190943841 190944150 -11384197 - AluY SINE Alu -5 306 1 697 244 53 109 chr4 190944697 190945159 -11383188 - MER110A LTR ERV1 -5 486 70 3692 105 24 0 chr4 190945191 190945732 -11382615 - MER41A LTR ERV1 0 554 1 402 105 0 79 chr4 190946079 190946155 -11382192 - AluSp/q SINE Alu -9 304 235 1496 115 0 18 chr4 190946156 190946374 -11381973 - AluSg/x SINE Alu 0 312 99 445 306 123 9 chr4 190946418 190946675 -11381672 + L2 LINE L2 2778 3056 -257 23 54 0 0 chr4 190947423 190947460 -11380887 + AT_rich Low_complexity Low_complexity 1 37 0 1732 142 68 4 chr4 190947461 190947742 -11380605 + AluJo SINE Alu 1 299 -13 2353 127 14 6 chr4 190947837 190948198 -11380149 - MER41E LTR ERV1 -147 365 2 412 130 0 14 chr4 190948389 190948458 -11379889 - MER92C LTR ERV1 0 554 487 386 241 0 23 chr4 190948618 190948705 -11379642 - MER92C LTR ERV1 -469 85 1 2114 127 9 3 chr4 190949169 190949509 -11378838 - L1MA2 LINE L1 -10 6294 5953 29 0 0 0 chr4 190950183 190950212 -11378135 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr4 190950869 190950904 -11377443 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr4 190951911 190951932 -11376415 + (T)n Simple_repeat Simple_repeat 1 21 0 10382 31 5 1 chr4 190952065 190954085 -11374262 - L1PA3 LINE L1 0 6155 4130 2260 114 3 0 chr4 190954501 190954799 -11373548 - AluSc SINE Alu -10 299 1 498 272 81 35 chr4 190955203 190955600 -11372747 - L1M4 LINE L1 -769 5377 4963 285 311 104 0 chr4 190955720 190955826 -11372521 + L2 LINE L2 3189 3305 -8 261 309 21 0 chr4 190955828 190955925 -11372422 - L1M4 LINE L1 -1303 4843 4745 208 280 27 13 chr4 190956153 190956228 -11372119 + (TATG)n Simple_repeat Simple_repeat 3 78 0 436 335 140 19 chr4 190956237 190957135 -11371212 - L1M4 LINE L1 -1799 4347 3341 61 37 0 0 chr4 190957288 190957370 -11370977 + AT_rich Low_complexity Low_complexity 1 82 0 24 32 0 0 chr4 190957387 190957418 -11370929 + AT_rich Low_complexity Low_complexity 1 31 0 350 300 145 7 chr4 190957479 190957769 -11370578 - L1M4 LINE L1 -3085 3061 2732 420 166 106 60 chr4 190957773 190957924 -11370423 - MER5C DNA MER1_type -1 323 166 2428 161 16 14 chr4 190958327 190958756 -11369591 - Tigger2a DNA MER2_type 0 434 5 1565 226 179 12 chr4 190958758 190959244 -11369103 - MLT1F1 LTR MaLR 0 567 1 4448 161 33 8 chr4 190959985 190960809 -11367538 - L1MA5 LINE L1 -47 6253 5410 447 267 17 8 chr4 190960989 190961109 -11367238 - MER5C DNA MER1_type -200 124 4 323 342 61 8 chr4 190961111 190961374 -11366973 - L1M4 LINE L1 -3409 2737 2461 603 301 111 22 chr4 190961386 190961612 -11366735 + MIR SINE MIR 1 246 -16 23 0 0 0 chr4 190961682 190961705 -11366642 + AT_rich Low_complexity Low_complexity 1 23 0 222 327 59 69 chr4 190961787 190961989 -11366358 + MIR SINE MIR 57 256 -6 37 23 0 0 chr4 190963231 190963275 -11365072 + AT_rich Low_complexity Low_complexity 1 44 0 2105 125 0 7 chr4 190963303 190963598 -11364749 + AluSq SINE Alu 1 293 -20 23 54 0 0 chr4 190964912 190964949 -11363398 + AT_rich Low_complexity Low_complexity 1 37 0 211 247 136 12 chr4 190965114 190965195 -11363152 + MIR SINE MIR 63 153 -109 5364 141 12 2 chr4 190965218 190966895 -11361452 + L1PA16 LINE L1 4469 6157 -9 2328 70 0 3 chr4 190967814 190968124 -11360223 - AluSc SINE Alu 0 309 1 228 253 39 0 chr4 190971107 190971261 -11357086 + (TA)n Simple_repeat Simple_repeat 2 161 0 34 24 0 0 chr4 190971318 190971359 -11356988 + AT_rich Low_complexity Low_complexity 1 41 0 1523 141 19 19 chr4 190971360 190971623 -11356724 - AluJo SINE Alu -39 273 11 2120 28 0 0 chr4 190971874 190972127 -11356220 + L1PA4 LINE L1 5900 6152 -3 276 186 0 0 chr4 190972949 190973008 -11355339 + CT-rich Low_complexity Low_complexity 1 59 0 216 0 0 0 chr4 190974128 190974152 -11354195 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 27 0 0 0 chr4 190974554 190974581 -11353766 + AT_rich Low_complexity Low_complexity 1 27 0 261 0 0 0 chr4 190978703 190978732 -11349615 + (CA)n Simple_repeat Simple_repeat 2 30 0 189 74 0 0 chr4 190978732 190978759 -11349588 + (GA)n Simple_repeat Simple_repeat 1 27 0 372 339 92 13 chr4 190979013 190979329 -11349018 - LTR16A LTR ERVL -109 341 1 1957 140 0 10 chr4 190979662 190979955 -11348392 + AluSx SINE Alu 2 291 -21 2296 57 10 17 chr4 190979961 190980262 -11348085 + AluY SINE Alu 3 301 -10 181 323 62 15 chr4 190980547 190980612 -11347735 - L2 LINE L2 -94 3178 3111 220 234 0 0 chr4 190980832 190980879 -11347468 - MIR SINE MIR -5 257 211 408 67 0 0 chr4 190980880 190980940 -11347407 + (TA)n Simple_repeat Simple_repeat 1 60 0 229 98 0 0 chr4 190981709 190981750 -11346597 + LTR66 LTR ERVL 398 438 -172 202 264 198 33 chr4 190981771 190981892 -11346455 + L2 LINE L2 3132 3272 0 22 88 0 0 chr4 190981901 190981958 -11346389 + AT_rich Low_complexity Low_complexity 1 57 0 820 137 43 22 chr4 190982179 190982318 -11346029 + FRAM SINE Alu 5 146 -30 31 0 0 0 chr4 190982324 190982355 -11345992 + AT_rich Low_complexity Low_complexity 1 31 0 1487 176 77 45 chr4 190982379 190982731 -11345616 - MLT1A1 LTR MaLR -2 363 1 30 27 0 0 chr4 190983464 190983501 -11344846 + AT_rich Low_complexity Low_complexity 1 37 0 2086 100 28 0 chr4 190983670 190983960 -11344387 - AluY SINE Alu -13 298 1 226 227 0 0 chr4 190984173 190984217 -11344130 + CT-rich Low_complexity Low_complexity 5 48 0 26 30 0 0 chr4 190984418 190984451 -11343896 + AT_rich Low_complexity Low_complexity 1 33 0 355 304 7 43 chr4 190984727 190984865 -11343482 + MIR SINE MIR 95 227 -35 423 0 0 0 chr4 190985696 190985743 -11342604 + (TG)n Simple_repeat Simple_repeat 2 48 0 1976 155 119 123 chr4 190986133 190986887 -11341460 + LTR1B LTR ERV1 1 751 -75 216 0 0 0 chr4 190988832 190988856 -11339491 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 270 56 0 0 chr4 190988855 190988891 -11339456 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr4 190990319 190990340 -11338007 + AT_rich Low_complexity Low_complexity 1 21 0 1901 97 4 11 chr4 190991611 190991880 -11336467 - AluSx SINE Alu -3 309 43 21 71 0 0 chr4 190991966 190992008 -11336339 + AT_rich Low_complexity Low_complexity 1 42 0 206 162 0 0 chr4 190992018 190992055 -11336292 + A-rich Low_complexity Low_complexity 1 37 0 227 204 61 10 chr4 190992153 190992251 -11336096 + (TATAA)n Simple_repeat Simple_repeat 4 106 0 223 420 0 0 chr4 190992353 190992422 -11335925 + A-rich Low_complexity Low_complexity 1 69 0 344 219 0 49 chr4 190992493 190992616 -11335731 + A-rich Low_complexity Low_complexity 1 117 0 204 222 28 0 chr4 190992854 190992890 -11335457 + (CACCC)n Simple_repeat Simple_repeat 4 40 0 310 289 27 7 chr4 190992947 190993260 -11335087 + CT-rich Low_complexity Low_complexity 1 319 0 22 0 0 0 chr4 190993262 190993284 -11335063 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 190993767 190993789 -11334558 + AT_rich Low_complexity Low_complexity 1 22 0 250 162 27 0 chr4 190994157 190994231 -11334116 + (TA)n Simple_repeat Simple_repeat 2 77 0 243 200 0 17 chr4 190994257 190994317 -11334030 + L1MC4 LINE L1 6634 6692 -1350 204 167 91 0 chr4 190994540 190994606 -11333741 + (TATAA)n Simple_repeat Simple_repeat 1 72 0 21 71 0 0 chr4 190994646 190994688 -11333659 + AT_rich Low_complexity Low_complexity 1 42 0 183 42 0 0 chr4 190995174 190995198 -11333149 + (TG)n Simple_repeat Simple_repeat 2 25 0 412 177 0 16 chr4 190995198 190995322 -11333025 + (TA)n Simple_repeat Simple_repeat 2 123 0 315 0 0 0 chr4 190995322 190995357 -11332990 + (GA)n Simple_repeat Simple_repeat 2 36 0 571 216 0 0 chr4 190995357 190995459 -11332888 - FLAM_C SINE Alu -39 104 3 267 298 16 16 chr4 190998462 190998586 -11329761 + (TA)n Simple_repeat Simple_repeat 2 125 0 1896 129 43 0 chr4 190999196 190999475 -11328872 + AluSx SINE Alu 1 291 -21 2397 73 0 0 chr4 190999696 190999999 -11328348 - AluY SINE Alu -8 303 1 1956 132 11 0 chr4 191000942 191001253 -11327094 + AluSx SINE Alu 1 314 0 851 218 82 51 chr4 191001828 191002121 -11326226 - MLT1F1 LTR MaLR -79 488 187 466 242 0 50 chr4 191002150 191002314 -11326033 + GA-rich Low_complexity Low_complexity 2 158 -16 2544 61 0 0 chr4 191002314 191002625 -11325722 + AluY SINE Alu 1 311 0 466 242 0 50 chr4 191002625 191002642 -11325705 + GA-rich Low_complexity Low_complexity 158 174 0 521 275 34 67 chr4 191002671 191002886 -11325461 - MLT1E LTR MaLR -355 212 1 14272 140 27 13 chr4 191003061 191004355 -11323992 - Tigger1 DNA MER2_type 0 2418 1144 2244 100 0 0 chr4 191004355 191004646 -11323701 + AluSx SINE Alu 1 291 -21 14272 140 27 13 chr4 191004646 191005339 -11323008 - Tigger1 DNA MER2_type -1274 1144 390 2258 92 0 7 chr4 191005339 191005633 -11322714 - AluSc SINE Alu -17 292 1 14272 140 27 13 chr4 191005633 191006009 -11322338 - Tigger1 DNA MER2_type -2028 390 21 974 75 0 15 chr4 191006267 191006401 -11321946 - L1PA4 LINE L1 -242 5913 5782 299 209 30 127 chr4 191006401 191006432 -11321915 + MIR SINE MIR 124 156 -106 9910 32 5 0 chr4 191006432 191008391 -11319956 - L1PA4 LINE L1 -2 6153 4187 299 209 30 127 chr4 191008391 191008493 -11319854 + MIR SINE MIR 156 244 -18 33 43 0 0 chr4 191010742 191010789 -11317558 + AT_rich Low_complexity Low_complexity 1 47 0 210 118 0 0 chr4 191010852 191010886 -11317461 + (TAA)n Simple_repeat Simple_repeat 3 36 0 186 43 0 0 chr4 191011557 191011580 -11316767 + (TCCA)n Simple_repeat Simple_repeat 3 25 0 248 137 20 0 chr4 191012261 191012312 -11316035 + GA-rich Low_complexity Low_complexity 1 52 0 231 224 20 0 chr4 191012487 191012536 -11315811 + GA-rich Low_complexity Low_complexity 4 53 0 25 0 0 0 chr4 191014629 191014654 -11313693 + AT_rich Low_complexity Low_complexity 1 25 0 234 0 0 0 chr4 191015044 191015070 -11313277 + (A)n Simple_repeat Simple_repeat 1 26 0 266 73 24 0 chr4 191016208 191016249 -11312098 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr4 191016773 191016795 -11311552 + AT_rich Low_complexity Low_complexity 1 22 0 407 326 115 38 chr4 191019629 191020029 -11308318 - L1MC/D LINE L1 -380 5724 5467 251 293 112 17 chr4 191021011 191021127 -11307220 + MIR SINE MIR 117 243 -19 1731 177 47 6 chr4 191021139 191021478 -11306869 - MLT1A1 LTR MaLR 0 365 13 237 308 51 13 chr4 191022628 191022706 -11305641 - MER5A DNA MER1_type 0 189 109 2021 122 3 23 chr4 191023064 191023368 -11304979 - AluY SINE Alu -13 298 1 356 310 112 62 chr4 191024479 191024915 -11303432 + L2 LINE L2 2456 2913 -401 558 0 0 0 chr4 191025127 191025189 -11303158 + (CTATT)n Simple_repeat Simple_repeat 1 62 0 280 308 0 0 chr4 191025203 191025268 -11303079 + L2 LINE L2 3249 3313 0 29 47 0 0 chr4 191026060 191026103 -11302244 + AT_rich Low_complexity Low_complexity 1 43 0 1546 85 5 9 chr4 191026113 191026325 -11302022 + L1PA8 LINE L1 5948 6158 -14 383 349 34 23 chr4 191026905 191027080 -11301267 + MIR SINE MIR 5 181 -81 244 206 8 0 chr4 191027082 191027154 -11301193 - L1MC/D LINE L1 -802 5332 5266 27 49 0 0 chr4 191027237 191027278 -11301069 + AT_rich Low_complexity Low_complexity 1 41 0 1266 243 112 3 chr4 191027451 191027818 -11300529 - LTR16C LTR ERVL 0 491 85 244 314 44 35 chr4 191027896 191028122 -11300225 - L1MC/D LINE L1 -1150 4979 4752 1104 331 96 45 chr4 191028753 191030506 -11297841 - L1MC/D LINE L1 -2100 4029 2187 364 340 19 13 chr4 191030880 191031039 -11297308 - HAL1 LINE L1 -944 1563 1404 331 305 60 37 chr4 191031072 191031370 -11296977 - L1MC/D LINE L1 -4877 1242 938 21 0 0 0 chr4 191032571 191032592 -11295755 + AT_rich Low_complexity Low_complexity 1 21 0 1956 126 14 7 chr4 191033793 191034087 -11294260 - AluSq SINE Alu -17 296 1 212 244 0 0 chr4 191034214 191034255 -11294092 - L2 LINE L2 -18 3254 3214 245 320 0 72 chr4 191035806 191035931 -11292416 - L2 LINE L2 -16 3297 3182 1074 249 0 4 chr4 191035991 191036216 -11292131 - MER58A DNA MER1_type 0 224 1 2010 125 10 20 chr4 191038803 191039180 -11289167 - AluSq SINE Alu 0 313 1 232 283 0 0 chr4 191039225 191039285 -11289062 + (TAA)n Simple_repeat Simple_repeat 3 62 0 555 269 99 36 chr4 191039767 191040196 -11288151 + MLT1H LTR MaLR 26 540 -9 232 319 0 14 chr4 191040356 191040428 -11287919 + G-rich Low_complexity Low_complexity 4 74 0 1748 291 92 74 chr4 191040453 191041696 -11286651 - L2 LINE L2 -444 2870 1606 421 302 39 103 chr4 191041785 191042143 -11286204 + L2 LINE L2 2910 3244 -69 1255 157 74 4 chr4 191042511 191042753 -11285594 - THE1C LTR MaLR -2 373 115 3477 89 93 18 chr4 191042755 191043316 -11285031 - LTR14B LTR ERVK 0 608 6 4094 146 37 40 chr4 191043354 191044342 -11284005 - MER11C LTR ERVK 0 1071 1 463 169 0 11 chr4 191044342 191044426 -11283921 - THE1C LTR MaLR -344 84 2 23 0 0 0 chr4 191045157 191045180 -11283167 + AT_rich Low_complexity Low_complexity 1 23 0 1920 92 0 31 chr4 191047732 191047993 -11280354 + AluSg SINE Alu 1 253 -57 338 282 18 27 chr4 191048114 191048224 -11280123 + L2 LINE L2 3205 3313 0 309 292 244 6 chr4 191048657 191048825 -11279522 - MIR SINE MIR -18 244 37 740 271 91 25 chr4 191051044 191051238 -11277109 - LTR16B LTR ERVL -5 459 279 2387 91 7 0 chr4 191051238 191051545 -11276802 + AluSp SINE Alu 1 309 -4 740 271 91 25 chr4 191051545 191051781 -11276566 - LTR16B LTR ERVL -185 279 1 365 289 59 134 chr4 191051978 191052366 -11275981 + L2 LINE L2 2914 3272 0 211 211 0 19 chr4 191055544 191055596 -11272751 + GA-rich Low_complexity Low_complexity 2 52 0 238 322 94 13 chr4 191056037 191056186 -11272161 + LTR33 LTR ERVL 6 166 -355 273 286 67 45 chr4 191056246 191056424 -11271923 + LTR33 LTR ERVL 332 513 -8 254 255 66 28 chr4 191057825 191057931 -11270416 - MIR SINE MIR -88 174 65 758 175 56 38 chr4 191058193 191058281 -11270066 + MER45A DNA AcHobo 16 110 -1471 1849 39 35 0 chr4 191058281 191058512 -11269835 - L1PA4 LINE L1 -6 6149 5911 758 175 56 38 chr4 191058512 191058583 -11269764 + MER45A DNA AcHobo 110 178 0 184 250 0 0 chr4 191058779 191058823 -11269524 - L2 LINE L2 -7 3306 3263 454 264 168 0 chr4 191061394 191061549 -11266798 + MER5A DNA MER1_type 9 189 0 185 65 32 0 chr4 191061718 191061749 -11266598 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 216 0 0 0 chr4 191062851 191062875 -11265472 + (TA)n Simple_repeat Simple_repeat 2 25 0 2037 141 0 3 chr4 191062875 191063180 -11265167 - AluJb SINE Alu -8 304 1 443 266 50 55 chr4 191063255 191063454 -11264893 - L2 LINE L2 0 3313 3116 402 257 27 87 chr4 191063877 191064060 -11264287 + MIR SINE MIR 84 255 -7 584 292 99 27 chr4 191064132 191064618 -11263729 + Tigger8 DNA MER2_type 13 533 -133 185 0 0 39 chr4 191064623 191064649 -11263698 + (TG)n Simple_repeat Simple_repeat 2 26 0 381 58 0 0 chr4 191064702 191064754 -11263593 + (TG)n Simple_repeat Simple_repeat 2 53 0 205 171 0 0 chr4 191064804 191064839 -11263508 + (TG)n Simple_repeat Simple_repeat 1 35 0 233 139 0 0 chr4 191065070 191065106 -11263241 - L2 LINE L2 -13 3300 3265 2025 162 24 18 chr4 191065660 191065716 -11262631 - L1PA16 LINE L1 -4 6162 6108 1837 139 72 31 chr4 191065716 191066076 -11262271 - THE1C LTR MaLR 0 375 1 2025 162 24 18 chr4 191066076 191066401 -11261946 - L1PA16 LINE L1 -58 6108 5779 299 385 65 39 chr4 191066709 191067018 -11261329 + L2 LINE L2 2480 2796 -518 190 321 25 25 chr4 191067184 191067265 -11261082 + L2 LINE L2 2981 3061 -211 1741 278 203 9 chr4 191067304 191068067 -11260280 + L2 LINE L2 1802 2712 -602 183 294 33 71 chr4 191068085 191068269 -11260078 + L2 LINE L2 2973 3149 -164 385 301 88 40 chr4 191068336 191068441 -11259906 + L2 LINE L2 3075 3173 -140 180 0 0 0 chr4 191068441 191068461 -11259886 + (TATG)n Simple_repeat Simple_repeat 1 20 0 425 90 15 0 chr4 191068461 191068528 -11259819 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 385 301 88 40 chr4 191068528 191068647 -11259700 + L2 LINE L2 3172 3311 -2 278 316 95 63 chr4 191068885 191069075 -11259272 + MIR3 SINE MIR 9 204 -4 2707 33 0 0 chr4 191069954 191070258 -11258089 - AluY SINE Alu -7 304 1 2078 124 7 0 chr4 191070474 191070765 -11257582 + AluSx SINE Alu 3 295 -17 24 32 0 0 chr4 191072236 191072267 -11256080 + AT_rich Low_complexity Low_complexity 1 31 0 474 323 87 18 chr4 191073921 191074150 -11254197 - MIR SINE MIR -16 246 2 213 121 0 0 chr4 191076693 191076726 -11251621 + (CA)n Simple_repeat Simple_repeat 2 34 0 255 274 19 47 chr4 191076845 191076951 -11251396 + MIR SINE MIR 110 212 -50 2106 134 3 0 chr4 191077194 191077492 -11250855 + AluSq SINE Alu 2 300 -13 21 36 0 0 chr4 191077825 191077853 -11250494 + AT_rich Low_complexity Low_complexity 1 28 0 1365 159 124 31 chr4 191078334 191078592 -11249755 + AluJo SINE Alu 5 286 -26 288 111 0 0 chr4 191078592 191078637 -11249710 + (TA)n Simple_repeat Simple_repeat 1 45 0 774 251 21 11 chr4 191078872 191079059 -11249288 - MIR SINE MIR -12 250 62 362 266 64 0 chr4 191079545 191079654 -11248693 - MLT1I LTR MaLR -260 149 34 369 290 81 23 chr4 191080018 191080325 -11248022 + L1ME LINE L1 5260 5584 -578 500 284 8 8 chr4 191080476 191080603 -11247744 + L2 LINE L2 3186 3312 -1 246 283 33 0 chr4 191080619 191080711 -11247636 + L1ME LINE L1 5795 5889 -281 21 0 0 0 chr4 191083256 191083277 -11245070 + AT_rich Low_complexity Low_complexity 1 21 0 2079 152 0 0 chr4 191083793 191084090 -11244257 + AluSx SINE Alu 1 297 -15 285 306 120 0 chr4 191084225 191084333 -11244014 - L2 LINE L2 -5 3267 3147 182 383 0 0 chr4 191084834 191084915 -11243432 + MIR SINE MIR 90 170 -92 268 186 171 0 chr4 191085167 191085237 -11243110 + MIR SINE MIR 165 246 -16 263 231 154 26 chr4 191085302 191085380 -11242967 + MIR SINE MIR 175 262 0 732 227 7 7 chr4 191087126 191087276 -11241071 - MIR SINE MIR -3 259 110 1422 149 0 9 chr4 191087294 191087522 -11240825 + AluJo SINE Alu 11 236 -76 2011 225 26 38 chr4 191088675 191089249 -11239098 - L1MB5 LINE L1 -8 6166 5600 263 340 97 0 chr4 191089513 191089616 -11238731 - L2 LINE L2 0 3272 3160 2210 110 0 16 chr4 191090102 191090419 -11237928 - AluSx SINE Alu 0 312 1 546 284 64 10 chr4 191090629 191090833 -11237514 - MLT1J LTR MaLR -194 317 103 296 261 151 25 chr4 191092614 191092733 -11235614 + L2 LINE L2 3169 3302 -11 220 353 108 38 chr4 191092835 191093260 -11235087 + L2 LINE L2 2521 2975 -339 188 264 38 0 chr4 191093600 191093653 -11234694 - L2 LINE L2 0 3272 3218 394 254 22 196 chr4 191093665 191094067 -11234280 + L2 LINE L2 2929 3260 -12 1723 203 73 25 chr4 191095803 191096285 -11232062 + MLT1D LTR MaLR 1 505 0 220 351 209 0 chr4 191097334 191097468 -11230879 + MIR3 SINE MIR 37 198 -10 1290 213 0 16 chr4 191097496 191097750 -11230597 + AluJb SINE Alu 11 260 -52 1823 155 50 44 chr4 191097750 191098112 -11230235 - THE1B LTR MaLR 0 364 1 10724 108 20 11 chr4 191098112 191099678 -11228669 - THE1B-int LTR MaLR 0 1580 1 1663 164 52 23 chr4 191099679 191100026 -11228321 - THE1B LTR MaLR -7 357 1 21 0 0 0 chr4 191103614 191103635 -11224712 + AT_rich Low_complexity Low_complexity 1 21 0 1081 163 71 46 chr4 191104687 191104888 -11223459 - MER33 DNA MER1_type -2267 318 107 2368 78 0 26 chr4 191104888 191105196 -11223151 - AluY SINE Alu -11 300 1 1081 163 71 46 chr4 191105196 191105277 -11223070 - MER33 DNA MER1_type -2478 107 29 2143 96 7 3 chr4 191105279 191105588 -11222759 + AluSp SINE Alu 3 312 0 283 291 121 21 chr4 191105644 191105813 -11222534 + MIR3 SINE MIR 3 187 -61 762 164 0 8 chr4 191105879 191106007 -11222340 - FLAM_C SINE Alu -16 127 1 690 287 202 23 chr4 191107317 191108040 -11220307 - L2 LINE L2 -4 3309 2444 260 330 0 11 chr4 191108396 191108487 -11219860 - MER94 DNA DNA -44 90 1 192 217 0 0 chr4 191109246 191109292 -11219055 + (CTA)n Simple_repeat Simple_repeat 2 47 0 338 267 0 69 chr4 191110862 191110929 -11217418 - MIR SINE MIR -156 106 47 2191 118 10 0 chr4 191110929 191111226 -11217121 + AluSg SINE Alu 1 300 -10 338 267 0 69 chr4 191111226 191111259 -11217088 - MIR SINE MIR -215 47 13 376 295 58 19 chr4 191111470 191111626 -11216721 - MIR SINE MIR -51 211 50 359 272 129 46 chr4 191112732 191112949 -11215398 - MIR SINE MIR -15 247 13 208 324 48 19 chr4 191113751 191113856 -11214491 + L2 LINE L2 2600 2707 -607 694 330 81 19 chr4 191114013 191114431 -11213916 - MLT1K LTR MaLR -118 470 27 220 294 0 0 chr4 191114542 191114593 -11213754 - MIR3 SINE MIR -10 198 148 1182 295 114 11 chr4 191114948 191115412 -11212935 + L2 LINE L2 1386 1897 -1417 589 295 60 19 chr4 191115545 191115813 -11212534 - MLT1J1 LTR MaLR -142 304 26 2393 293 52 52 chr4 191115827 191117067 -11211280 + L2 LINE L2 1912 3149 -164 372 94 0 0 chr4 191117067 191117120 -11211227 + (TA)n Simple_repeat Simple_repeat 2 54 0 213 278 0 0 chr4 191117146 191117200 -11211147 + L2 LINE L2 3222 3275 -38 204 40 0 0 chr4 191117429 191117454 -11210893 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 224 235 44 0 chr4 191117978 191118046 -11210301 + (TA)n Simple_repeat Simple_repeat 2 72 0 379 159 30 30 chr4 191118064 191118196 -11210151 + (TA)n Simple_repeat Simple_repeat 1 132 0 2205 119 26 0 chr4 191121134 191121436 -11206911 - AluSx SINE Alu -2 310 1 275 308 23 39 chr4 191123319 191123449 -11204898 + L2 LINE L2 2933 3060 -212 186 206 0 0 chr4 191123592 191123626 -11204721 + L2 LINE L2 3265 3298 -15 563 320 36 27 chr4 191124121 191124346 -11204001 - MIR SINE MIR -14 248 22 1583 125 37 110 chr4 191125044 191125372 -11202975 + AluJo SINE Alu 1 304 -8 2220 205 39 51 chr4 191126363 191126466 -11201881 - MER68 LTR ERV1 -1 561 458 1315 192 3 88 chr4 191126466 191126773 -11201574 - AluJo SINE Alu -31 281 1 2220 205 39 51 chr4 191126773 191127235 -11201112 - MER68 LTR ERV1 -104 458 3 249 310 30 40 chr4 191128006 191128106 -11200241 + L2 LINE L2 2986 3084 -188 196 336 188 7 chr4 191130092 191130241 -11198106 - L3b LINE CR1 -37 1546 1371 206 375 0 0 chr4 191130518 191130590 -11197757 - L2 LINE L2 -3 3269 3198 297 372 130 48 chr4 191130792 191131147 -11197200 - L2 LINE L2 0 3272 2889 1930 96 4 19 chr4 191131737 191132007 -11196340 + AluSp SINE Alu 1 266 -47 22 56 0 0 chr4 191132444 191132480 -11195867 + AT_rich Low_complexity Low_complexity 1 36 0 554 346 42 80 chr4 191132524 191132688 -11195659 - L2 LINE L2 -1831 1483 1314 2432 37 14 14 chr4 191132688 191132985 -11195362 + AluY SINE Alu 1 297 -14 554 346 42 80 chr4 191132985 191133031 -11195316 - L2 LINE L2 -2000 1314 1268 1660 180 18 25 chr4 191133031 191133356 -11194991 - AluJb SINE Alu 0 323 1 554 346 42 80 chr4 191133356 191133880 -11194467 - L2 LINE L2 -2046 1268 775 22 70 0 0 chr4 191133918 191133961 -11194386 + AT_rich Low_complexity Low_complexity 1 43 0 531 0 0 0 chr4 191134582 191134641 -11193706 + (CA)n Simple_repeat Simple_repeat 2 60 0 2586 17 0 7 chr4 191134767 191135058 -11193289 - AluY SINE Alu -5 306 18 234 0 0 0 chr4 191135985 191136011 -11192336 + (CA)n Simple_repeat Simple_repeat 2 27 0 261 270 22 95 chr4 191138553 191138690 -11189657 + L2 LINE L2 3179 3305 -8 301 244 37 12 chr4 191138946 191139028 -11189319 + CT-rich Low_complexity Low_complexity 1 84 0 183 42 0 0 chr4 191139753 191139777 -11188570 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 189 0 0 0 chr4 191140762 191140783 -11187564 + (T)n Simple_repeat Simple_repeat 1 21 0 1728 141 7 69 chr4 191141404 191141708 -11186639 - AluSx SINE Alu -25 287 3 303 208 0 0 chr4 191141877 191141930 -11186417 - FRAM/FAM SINE Alu -114 52 1 2370 109 0 3 chr4 191143457 191143769 -11184578 + AluSx SINE Alu 1 311 -1 180 279 0 0 chr4 191143994 191144037 -11184310 - L2 LINE L2 -4 3309 3267 2538 194 63 3 chr4 191144089 191144704 -11183643 + MER63C DNA MER1_type 265 916 -14 465 335 85 0 chr4 191144704 191144892 -11183455 - L2 LINE L2 -619 2695 2492 181 289 19 0 chr4 191149337 191149389 -11178958 - L2 LINE L2 0 3313 3261 21 0 0 0 chr4 191149567 191149588 -11178759 + AT_rich Low_complexity Low_complexity 1 21 0 2378 47 40 3 chr4 191150101 191150400 -11177947 - AluY SINE Alu -1 310 1 25 31 0 0 chr4 191150935 191150967 -11177380 + AT_rich Low_complexity Low_complexity 1 32 0 229 234 0 0 chr4 191151574 191151621 -11176726 + MLT1F1 LTR MaLR 1 47 -495 1609 147 4 8 chr4 191151621 191151872 -11176475 - AluSg SINE Alu -2 308 59 304 132 0 0 chr4 191152077 191152130 -11176217 - MLT2B2 LTR ERVL 0 520 468 239 263 0 12 chr4 191152133 191152213 -11176134 - L1MC4 LINE L1 -1347 6695 6617 345 47 0 0 chr4 191152213 191152256 -11176091 + (CA)n Simple_repeat Simple_repeat 1 43 0 1519 194 117 54 chr4 191152278 191152502 -11175845 - MLT2B2 LTR ERVL -44 471 263 2356 85 17 0 chr4 191152502 191152796 -11175551 + AluSq SINE Alu 15 313 0 1519 194 117 54 chr4 191152796 191153014 -11175333 - MLT2B2 LTR ERVL -252 263 1 1177 259 150 5 chr4 191153261 191153379 -11174968 + MLT1F1 LTR MaLR 72 171 -396 192 40 0 0 chr4 191153379 191153404 -11174943 + (TC)n Simple_repeat Simple_repeat 2 26 0 1177 259 150 5 chr4 191153404 191153691 -11174656 + MLT1F1 LTR MaLR 171 536 -31 230 231 10 106 chr4 191153724 191153828 -11174519 - MLT1J2 LTR MaLR -72 378 285 864 231 80 51 chr4 191154608 191154919 -11173428 - MLT1J2 LTR MaLR -130 320 1 2407 47 43 3 chr4 191155044 191155343 -11173004 + AluY SINE Alu 1 311 0 3342 62 2 0 chr4 191155656 191156088 -11172259 + L1PA8 LINE L1 5736 6168 -4 1463 222 21 3 chr4 191157402 191157735 -11170612 - MER58B DNA MER1_type 0 341 3 189 0 0 0 chr4 191157826 191157847 -11170500 + (T)n Simple_repeat Simple_repeat 1 21 0 233 172 35 17 chr4 191158050 191158108 -11170239 + L1MCa LINE L1 2007 2065 -4361 205 211 0 0 chr4 191158108 191158146 -11170201 + (TA)n Simple_repeat Simple_repeat 1 38 0 252 167 0 0 chr4 191158160 191158208 -11170139 + (CATA)n Simple_repeat Simple_repeat 3 50 0 29 28 0 0 chr4 191158680 191158716 -11169631 + AT_rich Low_complexity Low_complexity 1 36 0 204 206 0 0 chr4 191162189 191162223 -11166124 - L2 LINE L2 -38 3234 3201 452 294 70 25 chr4 191162267 191162468 -11165879 + MIR SINE MIR 12 221 -41 183 308 0 0 chr4 191162480 191162519 -11165828 - L2 LINE L2 -86 3186 3148 184 320 60 30 chr4 191162790 191162890 -11165457 - L2 LINE L2 -7 3306 3204 487 341 169 26 chr4 191163044 191164196 -11164151 + L2 LINE L2 1437 2753 -561 305 311 42 0 chr4 191164239 191164358 -11163989 + MER94 DNA DNA 5 128 -6 233 221 0 151 chr4 191164359 191164445 -11163902 + L2 LINE L2 3198 3270 -2 298 297 115 66 chr4 191165181 191165363 -11162984 - MIR SINE MIR -12 250 60 790 193 54 4 chr4 191165403 191165712 -11162635 - MLT1A1 LTR MaLR 0 365 5 2347 102 0 0 chr4 191166125 191166430 -11161917 + AluY SINE Alu 1 305 -6 505 189 28 9 chr4 191166466 191166572 -11161775 + MIR SINE MIR 98 205 -57 309 135 0 0 chr4 191166573 191166625 -11161722 + (TA)n Simple_repeat Simple_repeat 1 52 0 594 304 21 5 chr4 191168040 191168231 -11160116 - MIR SINE MIR -11 251 58 1990 139 7 0 chr4 191168290 191168578 -11159769 - AluJb SINE Alu -19 293 4 1230 148 5 7 chr4 191168945 191169355 -11158992 + L1PB1 LINE L1 5659 6147 -4 921 262 139 36 chr4 191169455 191169894 -11158453 + LTR33 LTR ERVL 38 521 0 1184 275 129 21 chr4 191170809 191171289 -11157058 - MLT1H LTR MaLR -6 543 12 27 29 0 0 chr4 191173333 191173367 -11154980 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr4 191173917 191173941 -11154406 + AT_rich Low_complexity Low_complexity 1 24 0 198 150 0 0 chr4 191175421 191175461 -11152886 + (TG)n Simple_repeat Simple_repeat 1 40 0 455 306 81 12 chr4 191176020 191176180 -11152167 + MIR SINE MIR 21 191 -71 748 301 48 64 chr4 191179409 191179785 -11148562 - MLT1K LTR MaLR -67 521 152 284 269 37 148 chr4 191180107 191180378 -11147969 + L2 LINE L2 3002 3242 -71 207 0 0 0 chr4 191180434 191180457 -11147890 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 22 56 0 0 chr4 191182136 191182172 -11146175 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr4 191182238 191182281 -11146066 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr4 191183035 191183071 -11145276 + AT_rich Low_complexity Low_complexity 1 36 0 672 246 84 21 chr4 191183479 191183670 -11144677 + MIR SINE MIR 48 250 -12 245 277 136 6 chr4 191184709 191184865 -11143482 - MIR SINE MIR -6 256 72 189 107 0 0 chr4 191184867 191184895 -11143452 + (TG)n Simple_repeat Simple_repeat 1 28 0 2013 103 3 31 chr4 191186146 191186437 -11141910 - AluSc SINE Alu -26 283 1 234 257 133 9 chr4 191187527 191187632 -11140715 - MER110A LTR ERV1 0 468 351 1773 164 7 3 chr4 191187741 191188033 -11140314 - AluJo SINE Alu -19 293 1 1884 161 6 22 chr4 191188509 191188712 -11139635 - MLT1A1 LTR MaLR -1 364 166 2785 95 0 8 chr4 191188712 191189090 -11139257 + THE1C LTR MaLR 1 375 0 1884 161 6 22 chr4 191189090 191189208 -11139139 - MLT1A1 LTR MaLR -199 166 48 3440 161 10 3 chr4 191189608 191190231 -11138116 + L1MA4A LINE L1 5676 6302 -1 22 0 0 0 chr4 191190390 191190412 -11137935 + AT_rich Low_complexity Low_complexity 1 22 0 341 298 61 0 chr4 191191008 191191122 -11137225 - L2 LINE L2 -4 3309 3189 355 276 92 35 chr4 191191333 191191507 -11136840 + L2 LINE L2 3113 3296 -17 217 182 73 18 chr4 191191974 191192029 -11136318 - MIR3 SINE MIR -5 203 146 362 293 81 8 chr4 191192579 191192702 -11135645 - MIR SINE MIR -58 150 19 2339 87 3 0 chr4 191193288 191193598 -11134749 + AluSp SINE Alu 1 311 -2 585 259 183 5 chr4 191193663 191193860 -11134487 - MIR SINE MIR -26 236 5 640 295 82 10 chr4 191193866 191194073 -11134274 - Charlie8 DNA MER1_type -2195 222 1 24 0 0 0 chr4 191194583 191194607 -11133740 + AT_rich Low_complexity Low_complexity 1 24 0 2650 36 0 3 chr4 191194811 191195117 -11133230 + AluY SINE Alu 2 306 -5 267 292 22 45 chr4 191195129 191195218 -11133129 - MIR SINE MIR -106 102 16 21 0 0 0 chr4 191195624 191195645 -11132702 + AT_rich Low_complexity Low_complexity 1 21 0 2247 104 3 0 chr4 191195707 191196004 -11132343 - AluSx SINE Alu -14 298 1 180 303 109 17 chr4 191196275 191196394 -11131953 + L2 LINE L2 3137 3266 -6 212 280 48 104 chr4 191197337 191197462 -11130885 - MIR SINE MIR -110 152 35 1722 86 56 0 chr4 191197609 191197876 -11130471 + L1MA3 LINE L1 6023 6304 -1 2021 124 6 32 chr4 191198482 191198797 -11129550 - AluSq SINE Alu -4 309 3 888 305 57 3 chr4 191198883 191199217 -11129130 + L1MC4 LINE L1 7385 7736 -306 188 353 0 0 chr4 191199288 191199356 -11128991 + MIR SINE MIR 184 251 -11 2418 49 0 29 chr4 191199410 191199716 -11128631 - AluY SINE Alu -14 297 1 2126 258 80 2 chr4 191202740 191203364 -11124983 + HsTC2c DNA Tc2 10 682 -47 2160 130 0 0 chr4 191203582 191203882 -11124465 - AluSx SINE Alu -12 300 1 186 324 169 0 chr4 191204176 191204312 -11124035 + MIR SINE MIR 93 251 -11 343 319 21 89 chr4 191204420 191204611 -11123736 - MER5B DNA MER1_type 0 178 1 275 132 38 0 chr4 191208494 191208547 -11119800 + (TATG)n Simple_repeat Simple_repeat 2 56 0 1310 180 99 43 chr4 191208547 191209001 -11119346 - LTR48 LTR ERV1 -2 785 130 248 209 0 0 chr4 191209038 191209081 -11119266 - LTR48B LTR ERV1 -601 43 1 248 329 0 12 chr4 191209475 191209557 -11118790 - MIR SINE MIR -179 83 3 216 254 0 0 chr4 191214371 191214426 -11113921 + (TG)n Simple_repeat Simple_repeat 1 55 0 365 352 5 42 chr4 191214774 191214990 -11113357 + L2 LINE L2 1802 2009 -1305 198 397 16 0 chr4 191217373 191217494 -11110853 + L2 LINE L2 2895 3017 -255 604 283 11 22 chr4 191217610 191217790 -11110557 - MER45A DNA AcHobo 0 178 1 22 35 0 0 chr4 191217820 191217849 -11110498 + AT_rich Low_complexity Low_complexity 1 29 0 210 37 0 0 chr4 191220998 191221025 -11107322 + (TG)n Simple_repeat Simple_repeat 2 28 0 1355 120 5 5 chr4 191221307 191221515 -11106832 + L1PA10 LINE L1 5957 6164 -4 224 236 0 0 chr4 191221574 191221629 -11106718 + A-rich Low_complexity Low_complexity 1 55 0 24 0 0 0 chr4 191223162 191223186 -11105161 + AT_rich Low_complexity Low_complexity 1 24 0 180 97 0 0 chr4 191225026 191225057 -11103290 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 186 43 0 0 chr4 191226814 191226837 -11101510 + (TG)n Simple_repeat Simple_repeat 2 24 0 1966 137 0 22 chr4 191227578 191227893 -11100454 + AluSx SINE Alu 5 312 0 1950 132 4 0 chr4 191228077 191228410 -11099937 + AluSx SINE Alu 1 334 0 25 0 0 0 chr4 191228508 191228533 -11099814 + AT_rich Low_complexity Low_complexity 1 25 0 2654 22 6 6 chr4 191228686 191228997 -11099350 + AluY SINE Alu 1 311 0 23 33 0 0 chr4 191229444 191229474 -11098873 + AT_rich Low_complexity Low_complexity 1 30 0 409 582 0 11 chr4 191229657 191229795 -11098552 + T-rich Low_complexity Low_complexity 1 138 -42 1909 83 8 0 chr4 191229795 191230047 -11098300 - AluY SINE Alu -57 254 1 409 582 0 11 chr4 191230047 191230090 -11098257 + T-rich Low_complexity Low_complexity 138 180 0 209 281 0 47 chr4 191230141 191230205 -11098142 - L2 LINE L2 -5 3267 3207 947 347 7 20 chr4 191230466 191230904 -11097443 + LTR16B LTR ERVL 33 464 0 9134 143 29 47 chr4 191231726 191233435 -11094912 - Tigger1 DNA MER2_type -739 1679 1 2773 165 30 15 chr4 191234238 191234771 -11093576 + MER34 LTR ERV1 1 541 -1 258 170 0 0 chr4 191234804 191234851 -11093496 + MIR SINE MIR 152 198 -64 25 31 0 0 chr4 191236612 191236644 -11091703 + AT_rich Low_complexity Low_complexity 1 32 0 374 328 129 0 chr4 191236683 191236839 -11091508 + MIR3 SINE MIR 34 208 0 2161 135 0 0 chr4 191237063 191237374 -11090973 + AluSx SINE Alu 1 311 -1 508 121 38 45 chr4 191240116 191240248 -11088099 + CT-rich Low_complexity Low_complexity 2 132 0 1766 163 0 7 chr4 191240253 191240530 -11087817 - AluJo SINE Alu -37 275 1 2097 111 3 14 chr4 191240934 191241231 -11087116 - AluSc SINE Alu -15 294 1 349 331 65 0 chr4 191242750 191242904 -11085443 - L1ME LINE L1 -376 5745 5582 222 340 75 28 chr4 191242940 191243046 -11085301 + L2 LINE L2 3141 3251 -21 547 270 71 107 chr4 191243200 191243537 -11084810 + MLT1J LTR MaLR 142 466 -45 270 339 71 36 chr4 191245840 191246008 -11082339 - MER5A DNA MER1_type 0 189 16 770 212 0 12 chr4 191246303 191246468 -11081879 + MLT1B LTR MaLR 3 165 -225 404 181 9 95 chr4 191246508 191246613 -11081734 + MER94 DNA DNA 39 134 0 256 281 26 44 chr4 191247287 191247401 -11080946 + L1ME LINE L1 328 439 -5631 259 179 0 77 chr4 191247754 191247832 -11080515 + L1ME LINE L1 495 566 -5504 556 290 102 0 chr4 191247947 191248123 -11080224 + MIR SINE MIR 19 212 -50 2268 131 16 16 chr4 191248367 191248740 -11079607 - THE1C LTR MaLR 0 375 3 22 35 0 0 chr4 191248955 191248984 -11079363 + AT_rich Low_complexity Low_complexity 1 29 0 264 382 70 63 chr4 191249096 191249538 -11078809 - L2 LINE L2 -1 3271 2827 1311 199 88 80 chr4 191250093 191250156 -11078191 - MLT2D LTR ERVL 0 414 353 6542 142 37 16 chr4 191250156 191250733 -11077614 - Tigger3b DNA MER2_type -1800 1228 665 1660 182 9 31 chr4 191250733 191251052 -11077295 - AluJo SINE Alu 0 312 1 6542 142 37 16 chr4 191251052 191251676 -11076671 - Tigger3b DNA MER2_type -2363 665 1 1311 199 88 80 chr4 191251676 191251695 -11076652 - MLT2D LTR ERVL -61 353 336 255 103 0 0 chr4 191251695 191251734 -11076613 + (CA)n Simple_repeat Simple_repeat 2 40 0 216 0 0 0 chr4 191251733 191251757 -11076590 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 1311 199 88 80 chr4 191251734 191252084 -11076263 - MLT2D LTR ERVL -78 336 1 226 338 42 0 chr4 191254004 191254075 -11074272 - MIR SINE MIR -114 148 75 3923 153 59 58 chr4 191254204 191255137 -11073210 + L1MC3 LINE L1 6850 7783 -2 285 230 0 0 chr4 191257229 191257316 -11071031 + MER5A DNA MER1_type 4 90 -99 263 293 0 49 chr4 191257378 191257460 -11070887 - MER5B DNA MER1_type -3 175 98 182 265 20 0 chr4 191257465 191257514 -11070833 - MIR SINE MIR -83 125 76 221 224 69 0 chr4 191258548 191258606 -11069741 - MIR SINE MIR -45 217 156 194 237 289 40 chr4 191259330 191259482 -11068865 - MIR SINE MIR -65 197 8 30 83 0 0 chr4 191259975 191260047 -11068300 + AT_rich Low_complexity Low_complexity 1 72 0 366 311 172 14 chr4 191260059 191260268 -11068079 - MIR SINE MIR -15 247 6 652 289 90 39 chr4 191260392 191260859 -11067488 + L1ME LINE L1 3704 4194 -1952 494 287 97 44 chr4 191261094 191262073 -11066274 + L1ME LINE L1 4615 5649 -521 544 255 27 33 chr4 191262133 191262317 -11066030 + MER112 DNA MER1_type 69 251 -9 647 45 11 0 chr4 191262920 191263009 -11065338 - L1PA13 LINE L1 -1 6162 6073 196 329 68 0 chr4 191263099 191263172 -11065175 - L2 LINE L2 -6 3307 3230 31 44 0 0 chr4 191264725 191264770 -11063577 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr4 191265417 191265449 -11062898 + AT_rich Low_complexity Low_complexity 1 32 0 526 198 0 0 chr4 191266261 191266347 -11062000 + AluJo SINE Alu 1 86 -226 1164 155 17 80 chr4 191266415 191266624 -11061723 + AluJo SINE Alu 89 283 -29 270 0 0 0 chr4 191266624 191266654 -11061693 + (CA)n Simple_repeat Simple_repeat 1 30 0 1164 155 17 80 chr4 191266654 191266683 -11061664 + AluJo SINE Alu 283 312 0 215 225 0 0 chr4 191266691 191266731 -11061616 + GA-rich Low_complexity Low_complexity 4 43 0 203 349 40 47 chr4 191267620 191267769 -11060578 + MIR SINE MIR 15 162 -46 2029 118 14 7 chr4 191268348 191268645 -11059702 - AluSc SINE Alu -8 301 3 353 297 130 7 chr4 191268879 191269017 -11059330 + MIR SINE MIR 101 255 -7 312 295 78 55 chr4 191269020 191269291 -11059056 - L1ME LINE L1 -5109 961 685 327 278 31 0 chr4 191270597 191270694 -11057653 + MIR SINE MIR 137 236 -26 358 225 1 3 chr4 191270806 191270889 -11057458 - MSTC LTR MaLR 0 452 347 543 213 41 32 chr4 191270897 191271071 -11057276 - MSTC LTR MaLR -210 186 1 23 33 0 0 chr4 191271495 191271525 -11056822 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 191272547 191272570 -11055777 + AT_rich Low_complexity Low_complexity 1 23 0 287 157 14 0 chr4 191273335 191273405 -11054942 + GA-rich Low_complexity Low_complexity 2 72 0 184 274 0 0 chr4 191274148 191274199 -11054148 + MER5A DNA MER1_type 1 51 -138 446 176 0 4 chr4 191274466 191274554 -11053793 + MER92B LTR ERV1 1 86 -468 4845 106 4 4 chr4 191276516 191277226 -11051121 - L1PB1 LINE L1 -1 6150 5441 6583 186 15 1 chr4 191277228 191277684 -11050663 + L1P5 LINE L1 3941 4389 -1762 234 0 0 0 chr4 191277684 191277710 -11050637 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 6583 186 15 1 chr4 191277710 191278719 -11049628 + L1P5 LINE L1 4389 5430 -721 209 373 32 56 chr4 191278730 191278856 -11049491 - MIR SINE MIR -69 139 17 24 32 0 0 chr4 191278963 191278994 -11049353 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr4 191279040 191279072 -11049275 + AT_rich Low_complexity Low_complexity 1 32 0 246 228 67 67 chr4 191280110 191280290 -11048057 - L1ME4a LINE L1 0 6121 5942 1101 185 70 41 chr4 191280610 191280776 -11047571 - L1ME4a LINE L1 -314 5852 5692 2035 87 33 11 chr4 191280776 191281051 -11047296 + AluY SINE Alu 17 297 -14 1101 185 70 41 chr4 191281051 191281198 -11047149 - L1ME4a LINE L1 -474 5692 5530 231 260 26 0 chr4 191281215 191281292 -11047055 + (TA)n Simple_repeat Simple_repeat 2 80 0 196 349 0 0 chr4 191285766 191285829 -11042518 - L2 LINE L2 -6 3266 3204 1917 113 4 7 chr4 191288372 191288646 -11039701 + AluSx SINE Alu 1 273 -39 2065 105 57 7 chr4 191288912 191289208 -11039139 - AluSx SINE Alu -1 311 1 344 278 68 38 chr4 191289648 191289781 -11038566 - L2 LINE L2 -17 3296 3160 372 333 17 45 chr4 191289986 191290163 -11038184 - MIR SINE MIR -10 252 81 640 326 57 9 chr4 191290458 191290688 -11037659 - MIR SINE MIR 0 262 22 279 0 0 0 chr4 191291072 191291103 -11037244 + (TG)n Simple_repeat Simple_repeat 2 32 0 576 259 34 95 chr4 191292005 191292132 -11036215 - MIR SINE MIR -14 248 144 2211 88 23 7 chr4 191292132 191292438 -11035909 + AluSx SINE Alu 2 312 0 576 259 34 95 chr4 191292438 191292573 -11035774 - MIR SINE MIR -118 144 2 732 281 95 55 chr4 191292970 191293369 -11034978 - MLT1C LTR MaLR -9 458 44 181 295 101 74 chr4 191293449 191293856 -11034491 - L2 LINE L2 -853 2461 2044 570 184 102 66 chr4 191294472 191294668 -11033679 - MER106A DNA MER1_type 0 236 34 1331 310 118 28 chr4 191295158 191296023 -11032324 + L2 LINE L2 2361 3306 -7 279 263 66 0 chr4 191296165 191296241 -11032106 - L2 LINE L2 -40 3273 3193 533 292 159 42 chr4 191299945 191300209 -11028138 - L2 LINE L2 0 3272 2978 737 188 0 0 chr4 191300565 191300693 -11027654 - FLAM_A SINE Alu -5 128 1 761 172 125 36 chr4 191301102 191301294 -11027053 - MER2 DNA MER2_type -135 210 2 25 31 0 0 chr4 191301996 191302028 -11026319 + AT_rich Low_complexity Low_complexity 1 32 0 238 295 54 62 chr4 191304952 191305081 -11023266 - L2 LINE L2 -15 3298 3171 522 232 39 61 chr4 191305271 191305452 -11022895 + MER104 DNA Tc2 1 177 -3 419 306 60 8 chr4 191305566 191305700 -11022647 - MIR SINE MIR -41 221 81 22 35 0 0 chr4 191305726 191305755 -11022592 + AT_rich Low_complexity Low_complexity 1 29 0 204 186 23 0 chr4 191305985 191306028 -11022319 - MIR3 SINE MIR -23 185 142 2786 104 0 3 chr4 191307387 191307763 -11020584 - THE1C LTR MaLR 0 375 1 29 0 0 0 chr4 191307783 191307812 -11020535 + AT_rich Low_complexity Low_complexity 1 29 0 367 264 115 27 chr4 191309352 191309500 -11018847 + MIR3 SINE MIR 34 194 -14 186 286 18 0 chr4 191309562 191309618 -11018729 - L2 LINE L2 -189 3083 3027 21 0 0 0 chr4 191310624 191310645 -11017702 + AT_rich Low_complexity Low_complexity 1 21 0 2304 110 0 0 chr4 191311787 191312096 -11016251 - AluSq SINE Alu -4 309 1 438 20 0 0 chr4 191313046 191313097 -11015250 + (TA)n Simple_repeat Simple_repeat 2 52 0 262 274 0 0 chr4 191313253 191313326 -11015021 - L1MC4 LINE L1 -138 7904 7832 1722 147 62 35 chr4 191313343 191313683 -11014664 - THE1C LTR MaLR -26 349 1 1642 176 37 35 chr4 191313691 191314050 -11014297 - THE1C LTR MaLR -15 413 1 8868 143 37 39 chr4 191314050 191315597 -11012750 - THE1C-int LTR MaLR 0 1580 37 1604 127 37 127 chr4 191315611 191316021 -11012326 - THE1C LTR MaLR 0 375 3 708 293 28 5 chr4 191316759 191316971 -11011376 + LTR16C LTR ERVL 275 491 0 701 287 62 40 chr4 191317163 191317283 -11011064 - HAL1 LINE L1 -45 2462 2346 2358 85 0 13 chr4 191317283 191317588 -11010759 - AluSg SINE Alu -9 301 1 701 287 62 40 chr4 191317588 191317871 -11010476 - HAL1 LINE L1 -161 2346 2050 1742 172 45 31 chr4 191317913 191318371 -11009976 + L1MC/D LINE L1 5154 5618 -726 459 210 48 0 chr4 191318376 191318500 -11009847 - HAL1 LINE L1 -480 2027 1898 613 250 189 56 chr4 191318510 191318906 -11009441 - HAL1 LINE L1 -886 1621 1173 * 42774 33 21 1 chr4 191318891 191324917 -11003430 - L1PA2 LINE L1 -3 6152 1 955 302 78 26 chr4 191325059 191325522 -11002825 - HAL1 LINE L1 -1467 1040 554 820 256 117 22 chr4 191325564 191325838 -11002509 - HAL1 LINE L1 -2035 472 173 186 43 0 0 chr4 191327466 191327489 -11000858 + (TAA)n Simple_repeat Simple_repeat 2 24 0 310 357 45 49 chr4 191327729 191327973 -11000374 - MIR SINE MIR -1 261 19 1912 98 4 4 chr4 191329296 191329550 -10998797 - AluSq SINE Alu -59 254 1 686 203 0 0 chr4 191329948 191330071 -10998276 - FLAM_C SINE Alu -20 123 1 257 338 117 19 chr4 191330082 191330236 -10998111 - MIR SINE MIR -74 188 20 523 225 9 27 chr4 191330381 191330492 -10997855 - L2 LINE L2 0 3272 3164 251 269 13 26 chr4 191330768 191330846 -10997501 + MER5B DNA MER1_type 96 172 -6 551 163 20 0 chr4 191331273 191331371 -10996976 - L1MA9 LINE L1 -162 6150 6051 277 87 22 0 chr4 191331377 191331423 -10996924 - MADE1 DNA Mariner 0 80 34 686 150 56 83 chr4 191331612 191331792 -10996555 + L1MA9 LINE L1 6138 6312 0 1019 33 0 33 chr4 191331981 191332103 -10996244 + AluY SINE Alu 19 136 -175 895 104 0 0 chr4 191332104 191332229 -10996118 + AluSg/x SINE Alu 183 307 -5 1834 178 10 0 chr4 191333687 191334031 -10994316 + AluJb SINE Alu 1 347 0 197 313 113 62 chr4 191334069 191334264 -10994083 + MIR SINE MIR 8 212 -50 22 88 0 0 chr4 191334455 191334512 -10993835 + AT_rich Low_complexity Low_complexity 1 57 0 2115 124 3 16 chr4 191335974 191336288 -10992059 + AluSx SINE Alu 1 310 -2 234 273 23 0 chr4 191336850 191336938 -10991409 + L1MC4 LINE L1 6614 6703 -1339 195 162 0 0 chr4 191336940 191336977 -10991370 + (CA)n Simple_repeat Simple_repeat 2 38 0 28 29 0 0 chr4 191337039 191337074 -10991273 + AT_rich Low_complexity Low_complexity 1 35 0 358 324 34 39 chr4 191337231 191337435 -10990912 - L2 LINE L2 -176 3096 2894 995 255 120 38 chr4 191337522 191337759 -10990588 - MLT1I LTR MaLR -11 398 119 2111 123 3 0 chr4 191337759 191338060 -10990287 + AluSp SINE Alu 1 302 -11 995 255 120 38 chr4 191338060 191338190 -10990157 - MLT1I LTR MaLR -290 119 1 534 344 65 51 chr4 191338246 191338315 -10990032 - L2 LINE L2 -583 2731 2664 577 239 62 6 chr4 191338315 191338491 -10989856 - MER5A DNA MER1_type 0 189 4 534 344 65 51 chr4 191338491 191339210 -10989137 - L2 LINE L2 -650 2664 1932 743 0 0 11 chr4 191341533 191341621 -10986726 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 219 69 0 0 chr4 191343852 191343881 -10984466 + (CA)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chr4 191344198 191344228 -10984119 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 191344261 191344289 -10984058 + AT_rich Low_complexity Low_complexity 1 28 0 13614 36 1 1 chr4 191344362 191346775 -10981572 - L1PA4 LINE L1 -3 6152 3738 221 0 0 33 chr4 191347093 191347123 -10981224 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 388 315 31 8 chr4 191347340 191347470 -10980877 - MIR3 SINE MIR -14 194 62 260 362 35 17 chr4 191348333 191348441 -10979906 - L2 LINE L2 0 3272 3160 1764 195 65 105 chr4 191348441 191348961 -10979386 - MER70B LTR ERVL -1 577 83 1744 173 0 29 chr4 191348961 191349268 -10979079 - AluJo SINE Alu -14 298 1 1764 195 65 105 chr4 191349268 191349348 -10978999 - MER70B LTR ERVL -495 83 1 203 302 0 0 chr4 191349468 191349521 -10978826 - L2 LINE L2 -1 3271 3219 2074 124 3 0 chr4 191349896 191350186 -10978161 - AluSx SINE Alu -21 291 1 226 320 44 25 chr4 191350239 191350345 -10978002 + MIR SINE MIR 19 124 -84 354 307 39 7 chr4 191350807 191350960 -10977387 + MIR SINE MIR 99 256 -6 238 220 11 88 chr4 191350982 191351073 -10977274 + MIR SINE MIR 128 211 -51 411 376 36 0 chr4 191351453 191351618 -10976729 + MIR SINE MIR 21 191 -71 2114 123 0 7 chr4 191352423 191352769 -10975578 + AluSq SINE Alu 1 313 0 257 252 52 0 chr4 191354523 191354678 -10973669 + (TA)n Simple_repeat Simple_repeat 1 163 0 331 309 94 21 chr4 191356064 191356297 -10972050 - L2 LINE L2 -74 3239 2990 78 38 0 0 chr4 191356484 191356590 -10971757 + AT_rich Low_complexity Low_complexity 1 106 0 259 293 64 32 chr4 191356590 191356747 -10971600 - L2 LINE L2 -339 2975 2814 2758 13 0 16 chr4 191358158 191358473 -10969874 - AluYa5 SINE Alu -1 310 1 2120 100 0 17 chr4 191359504 191359820 -10968527 + AluSx SINE Alu 1 311 0 934 341 202 26 chr4 191361131 191362320 -10966027 - L2 LINE L2 -227 3045 2066 2687 96 8 11 chr4 191362320 191362696 -10965651 + THE1C LTR MaLR 1 375 0 934 341 202 26 chr4 191362696 191363478 -10964869 - L2 LINE L2 -1206 2066 720 371 271 58 77 chr4 191363897 191364104 -10964243 + MIR SINE MIR 47 249 -13 2480 139 31 152 chr4 191364302 191364987 -10963360 + MER7C DNA MER2_type 1 602 0 201 268 18 0 chr4 191365057 191365113 -10963234 + L2 LINE L2 3242 3298 -15 497 219 16 0 chr4 191366093 191366221 -10962126 + (TATG)n Simple_repeat Simple_repeat 2 131 0 212 269 0 0 chr4 191366560 191366612 -10961735 + L3 LINE CR1 460 511 -1066 29 28 0 0 chr4 191367201 191367237 -10961110 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 191367948 191367970 -10960377 + AT_rich Low_complexity Low_complexity 1 22 0 4043 272 82 25 chr4 191368720 191372658 -10955689 - L1ME1 LINE L1 -327 5908 23 247 355 11 111 chr4 191372678 191372940 -10955407 + L2 LINE L2 2994 3229 -43 4104 217 14 12 chr4 191373640 191374671 -10953676 - L1MB7 LINE L1 -15 6169 5134 2203 110 0 7 chr4 191374671 191374972 -10953375 + AluSq SINE Alu 1 299 -14 4104 217 14 12 chr4 191374972 191375164 -10953183 - L1MB7 LINE L1 -1050 5134 4944 241 83 0 0 chr4 191375658 191375694 -10952653 - MADE1 DNA Mariner -44 36 1 2240 115 0 3 chr4 191376114 191376419 -10951928 - AluSg SINE Alu -6 304 1 375 23 0 0 chr4 191377064 191377108 -10951239 + (TG)n Simple_repeat Simple_repeat 2 45 0 207 0 0 0 chr4 191377107 191377130 -10951217 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 2027 123 0 16 chr4 191377130 191377438 -10950909 - AluSx SINE Alu -9 303 1 189 152 0 0 chr4 191377995 191378017 -10950330 + A-rich Low_complexity Low_complexity 1 22 -24 1520 150 87 4 chr4 191378017 191378283 -10950064 + AluJb SINE Alu 1 288 -24 189 152 0 0 chr4 191378283 191378306 -10950041 + A-rich Low_complexity Low_complexity 21 46 0 29 0 0 0 chr4 191381364 191381393 -10946954 + AT_rich Low_complexity Low_complexity 1 29 0 1382 218 72 26 chr4 191381699 191382152 -10946195 - MER39 LTR ERV1 0 707 1 393 266 123 25 chr4 191382742 191382945 -10945402 + MIR SINE MIR 6 228 -34 27 87 0 0 chr4 191383063 191383132 -10945215 + AT_rich Low_complexity Low_complexity 1 69 0 378 125 0 42 chr4 191383135 191383231 -10945116 + MER96B DNA MER1_type? 86 177 -240 1807 140 6 40 chr4 191383312 191383633 -10944714 + AluJo SINE Alu 3 312 0 268 200 16 43 chr4 191383753 191383938 -10944409 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chr4 191383985 191384006 -10944341 + AT_rich Low_complexity Low_complexity 1 21 0 1913 87 0 22 chr4 191384051 191384326 -10944021 + L1PA7 LINE L1 5879 6147 -7 2161 121 3 3 chr4 191384458 191384765 -10943582 + AluSg SINE Alu 1 307 -3 217 303 28 3 chr4 191386959 191387049 -10941298 - MIR SINE MIR -24 184 90 381 43 0 0 chr4 191387067 191387114 -10941233 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 24 67 0 0 chr4 191387627 191387672 -10940675 + AT_rich Low_complexity Low_complexity 1 45 0 256 252 0 97 chr4 191389804 191389907 -10938440 + MIR SINE MIR 120 212 -50 215 283 11 0 chr4 191390656 191390748 -10937599 + (TA)n Simple_repeat Simple_repeat 2 94 0 220 155 28 0 chr4 191390759 191390830 -10937517 + (TA)n Simple_repeat Simple_repeat 2 74 0 411 274 110 20 chr4 191391515 191391704 -10936643 - MIR SINE MIR -61 147 1 267 182 0 0 chr4 191391804 191391848 -10936499 + MIR SINE MIR 219 262 0 549 144 0 10 chr4 191392121 191392225 -10936122 - L1MA5A LINE L1 0 6297 6195 181 236 179 66 chr4 191392246 191392352 -10935995 + L2 LINE L2 2412 2529 -785 1947 181 11 8 chr4 191397332 191397696 -10930651 - MLT1A1 LTR MaLR 0 365 1 209 257 236 29 chr4 191398080 191398220 -10930127 + MIR SINE MIR 23 191 -71 973 182 65 13 chr4 191400033 191400264 -10928083 - L1MA4 LINE L1 -2 6298 6056 21 0 0 0 chr4 191401532 191401553 -10926794 + AT_rich Low_complexity Low_complexity 1 21 0 361 267 25 25 chr4 191402727 191402847 -10925500 + MIR3 SINE MIR 84 203 -5 921 217 0 0 chr4 191403153 191403319 -10925028 + FRAM SINE Alu 1 166 0 1761 126 22 63 chr4 191403454 191403771 -10924576 + AluSp SINE Alu 3 306 -7 898 259 11 57 chr4 191403930 191404192 -10924155 - MIR SINE MIR 0 262 13 2448 71 0 3 chr4 191404295 191404589 -10923758 - AluSq SINE Alu -20 293 1 304 381 98 37 chr4 191405019 191405347 -10923000 - L2 LINE L2 0 3272 2925 234 0 0 0 chr4 191405560 191405586 -10922761 + (GA)n Simple_repeat Simple_repeat 1 26 0 195 42 0 0 chr4 191405906 191405930 -10922417 + (A)n Simple_repeat Simple_repeat 1 24 0 23 54 0 0 chr4 191406480 191406517 -10921830 + AT_rich Low_complexity Low_complexity 1 37 0 201 277 0 36 chr4 191407150 191407233 -10921114 + (CATA)n Simple_repeat Simple_repeat 4 83 0 1240 334 100 21 chr4 191408003 191408811 -10919536 + L3 LINE CR1 629 1500 -77 305 303 56 39 chr4 191408902 191409136 -10919211 + MER112 DNA MER1_type 18 255 -5 2210 113 0 0 chr4 191410039 191410331 -10918016 - AluSq SINE Alu -21 292 1 2207 109 3 6 chr4 191411369 191411680 -10916667 - AluSg SINE Alu 0 310 1 1185 194 31 8 chr4 191412131 191412389 -10915958 + L1MC1 LINE L1 6008 6271 -62 1635 181 0 17 chr4 191413081 191413374 -10914973 + AluJo SINE Alu 1 288 -24 328 290 0 28 chr4 191414472 191414579 -10913768 + CT-rich Low_complexity Low_complexity 2 105 0 231 419 7 7 chr4 191416359 191416495 -10911852 + L3 LINE CR1 1047 1182 -395 342 351 53 16 chr4 191416986 191417174 -10911173 - MIR SINE MIR -47 215 21 225 0 0 0 chr4 191418102 191418127 -10910220 + (TA)n Simple_repeat Simple_repeat 2 26 0 453 36 0 0 chr4 191418127 191418182 -10910165 + (TG)n Simple_repeat Simple_repeat 2 56 0 234 0 0 0 chr4 191420283 191420309 -10908038 + (T)n Simple_repeat Simple_repeat 1 26 0 213 325 31 52 chr4 191423354 191423545 -10904802 + L2 LINE L2 2722 2908 -406 370 339 33 22 chr4 191426248 191426431 -10901916 - MIR SINE MIR -37 225 41 3923 88 17 24 chr4 191427187 191427766 -10900581 + L1PA10 LINE L1 5594 6168 0 2074 101 17 0 chr4 191427892 191428179 -10900168 + AluSp SINE Alu 5 296 -17 561 287 185 5 chr4 191428182 191428398 -10899949 - MIR SINE MIR -7 255 1 2330 89 0 3 chr4 191429792 191429807 -10898540 - AluSg SINE Alu -9 301 287 216 0 0 0 chr4 191429807 191429831 -10898516 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 2330 89 0 3 chr4 191429831 191430117 -10898230 - AluSg SINE Alu -23 287 1 183 212 121 15 chr4 191430266 191430332 -10898015 + L3 LINE CR1 886 958 -619 246 128 0 0 chr4 191431799 191431838 -10896509 + (TG)n Simple_repeat Simple_repeat 2 40 0 227 31 31 0 chr4 191431915 191431947 -10896400 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2536 60 0 16 chr4 191433206 191433522 -10894825 + AluY SINE Alu 1 311 0 27 29 0 0 chr4 191434791 191434825 -10893522 + AT_rich Low_complexity Low_complexity 1 34 0 1853 140 50 0 chr4 191436530 191436809 -10891538 + AluSx SINE Alu 11 303 -9 273 119 0 0 chr4 191438034 191438076 -10890271 + (TGG)n Simple_repeat Simple_repeat 3 44 0 1624 98 14 0 chr4 191438744 191438994 -10889353 - AluSx SINE Alu 0 316 64 24 0 0 0 chr4 191439017 191439041 -10889306 + AT_rich Low_complexity Low_complexity 1 24 0 430 201 127 33 chr4 191439114 191439373 -10888974 - L1ME4a LINE L1 -67 6054 5765 21 36 0 0 chr4 191439526 191439554 -10888793 + AT_rich Low_complexity Low_complexity 1 28 0 814 243 66 4 chr4 191439917 191440160 -10888187 - MIR SINE MIR -3 259 2 256 232 0 0 chr4 191440245 191440314 -10888033 - MER4-int LTR ERV1 -5421 1177 1109 416 274 16 45 chr4 191440430 191440593 -10887754 - MIR SINE MIR -29 179 15 206 300 0 0 chr4 191441178 191441228 -10887119 + L2 LINE L2 3218 3267 -5 207 216 20 20 chr4 191442180 191442231 -10886116 + (TG)n Simple_repeat Simple_repeat 2 52 0 491 322 44 41 chr4 191442935 191443230 -10885117 - L2 LINE L2 -12 3301 3006 206 267 67 42 chr4 191443236 191443356 -10884991 + MER91C DNA MER1_type 1 123 -17 308 307 199 12 chr4 191443733 191443974 -10884373 - L2 LINE L2 -797 2517 2232 22 0 0 0 chr4 191445120 191445142 -10883205 + AT_rich Low_complexity Low_complexity 1 22 0 644 140 14 91 chr4 191445500 191445643 -10882704 + FLAM_C SINE Alu 1 132 -1 1034 309 72 11 chr4 191446796 191447240 -10881107 + L2 LINE L2 2585 3058 -255 340 307 24 55 chr4 191447423 191447550 -10880797 + L2 LINE L2 3132 3254 -18 281 328 73 21 chr4 191448950 191449142 -10879205 - MIR SINE MIR -3 259 60 22 0 0 0 chr4 191449535 191449557 -10878790 + AT_rich Low_complexity Low_complexity 1 22 0 213 273 0 0 chr4 191449688 191449743 -10878604 + (TTCA)n Simple_repeat Simple_repeat 1 55 0 3436 204 44 60 chr4 191451331 191452408 -10875939 + L1MC3 LINE L1 6705 7763 -22 1662 155 7 55 chr4 191452485 191452795 -10875552 + AluJo SINE Alu 1 295 -17 266 335 134 11 chr4 191453376 191453555 -10874792 - L2 LINE L2 -4 3309 3109 679 323 163 8 chr4 191453669 191454044 -10874303 - L2 LINE L2 -436 2878 2446 214 73 49 0 chr4 191454727 191454768 -10873579 + GA-rich Low_complexity Low_complexity 1 43 0 234 0 0 0 chr4 191455802 191455828 -10872519 + (A)n Simple_repeat Simple_repeat 1 26 0 25 31 0 0 chr4 191457096 191457128 -10871219 + AT_rich Low_complexity Low_complexity 1 32 0 2613 39 3 0 chr4 191457825 191458133 -10870214 + AluY SINE Alu 1 309 -2 201 179 30 30 chr4 191458228 191458295 -10870052 + (TTTG)n Simple_repeat Simple_repeat 3 69 0 374 295 149 33 chr4 191458397 191459096 -10869251 + HAL1 LINE L1 772 1551 -956 2445 54 0 6 chr4 191459198 191459512 -10868835 - L1PA4 LINE L1 0 6155 5844 2911 35 3 5 chr4 191459512 191459885 -10868462 + L1PA4 LINE L1 5452 5823 -332 322 239 0 0 chr4 191459987 191460058 -10868289 + HAL1 LINE L1 1682 1752 -755 181 203 141 47 chr4 191460341 191460405 -10867942 - L2 LINE L2 -182 3090 3021 288 301 0 12 chr4 191461201 191461284 -10867063 + MIR3 SINE MIR 120 201 -7 196 77 51 0 chr4 191462667 191462706 -10865641 + (CA)n Simple_repeat Simple_repeat 1 41 0 437 49 0 16 chr4 191463003 191463064 -10865283 + (TG)n Simple_repeat Simple_repeat 2 61 0 239 216 20 0 chr4 191463064 191463115 -10865232 + (TA)n Simple_repeat Simple_repeat 2 53 0 246 297 10 109 chr4 191463123 191463180 -10865167 - L2 LINE L2 -36 3236 3192 2552 43 0 0 chr4 191463180 191463483 -10864864 - AluY SINE Alu -8 303 1 246 297 10 109 chr4 191463483 191463526 -10864821 - L2 LINE L2 -80 3192 3146 493 264 144 10 chr4 191463549 191463757 -10864590 + L2 LINE L2 1164 1399 -1915 741 300 32 16 chr4 191464845 191465092 -10863255 - MIR SINE MIR 0 262 12 744 270 74 15 chr4 191465439 191465709 -10862638 - MLT1J2 LTR MaLR -162 288 3 1875 166 0 13 chr4 191467265 191467573 -10860774 - AluJb SINE Alu -8 304 1 831 286 57 4 chr4 191469152 191469400 -10858947 + MIR SINE MIR 2 262 0 1705 191 29 20 chr4 191469777 191470128 -10858219 - MLT1A1 LTR MaLR 0 365 12 2219 92 14 3 chr4 191470700 191470992 -10857355 - AluSx SINE Alu -13 299 5 378 313 16 26 chr4 191471519 191471711 -10856636 - L1ME LINE L1 -454 5667 5478 296 313 54 73 chr4 191472263 191472421 -10855926 - MLT1J LTR MaLR -145 366 213 2252 101 7 0 chr4 191472421 191472717 -10855630 - AluSq SINE Alu -15 298 1 296 313 54 73 chr4 191472717 191472817 -10855530 - MLT1J LTR MaLR -298 213 113 1900 175 24 34 chr4 191472817 191473234 -10855113 - MLT1C LTR MaLR 0 467 55 1435 123 71 0 chr4 191473751 191473983 -10854364 - AluSg/x SINE Alu 0 332 86 563 283 12 29 chr4 191474066 191474239 -10854108 - MIR SINE MIR -83 179 10 241 320 13 13 chr4 191475117 191475192 -10853155 - L2 LINE L2 -12 3301 3227 305 333 20 0 chr4 191477544 191477643 -10850704 - MIR SINE MIR -98 164 64 1862 122 8 4 chr4 191477887 191478017 -10850330 - AluSq SINE Alu -50 263 135 203 0 0 36 chr4 191478017 191478045 -10850302 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1862 122 8 4 chr4 191478045 191478176 -10850171 - AluSq SINE Alu -178 135 1 471 167 19 56 chr4 191478593 191478701 -10849646 + L2 LINE L2 3203 3306 -7 850 122 0 8 chr4 191478743 191478866 -10849481 + FLAM_C SINE Alu 7 128 -15 361 308 0 0 chr4 191479515 191479606 -10848741 - L2 LINE L2 0 3313 3223 1103 203 0 42 chr4 191479668 191479718 -10848629 + AluJo SINE Alu 75 126 -342 2743 23 0 0 chr4 191479718 191480020 -10848327 - AluYb8 SINE Alu -5 313 12 1103 203 0 42 chr4 191480020 191480373 -10847974 + AluJo SINE Alu 126 468 0 694 293 80 19 chr4 191480438 191480861 -10847486 - LTR16B LTR ERVL -1 463 15 23 33 0 0 chr4 191481005 191481035 -10847312 + AT_rich Low_complexity Low_complexity 1 30 0 1661 187 7 10 chr4 191481035 191481324 -10847023 - AluJo SINE Alu -24 288 1 5775 108 17 4 chr4 191482282 191483098 -10845249 - L1MA3 LINE L1 -1 6304 5478 2800 13 0 0 chr4 191483936 191484240 -10844107 + AluYb8 SINE Alu 1 304 -14 195 313 0 48 chr4 191484422 191484505 -10843842 - MIR3 SINE MIR -5 203 125 301 344 39 8 chr4 191485368 191485496 -10842851 - HAL1 LINE L1 -882 1625 1494 367 171 43 0 chr4 191485515 191485585 -10842762 + MLT1J1 LTR MaLR 31 103 -343 3442 153 60 2 chr4 191485650 191486238 -10842109 - L1PB4 LINE L1 -8 6148 5527 1484 73 0 0 chr4 191486489 191486668 -10841679 - AluSp SINE Alu -2 311 133 223 56 93 0 chr4 191486670 191486724 -10841623 + (TA)n Simple_repeat Simple_repeat 1 59 0 319 53 133 0 chr4 191486744 191486895 -10841452 + (TA)n Simple_repeat Simple_repeat 1 171 0 1044 61 23 8 chr4 191486895 191487027 -10841320 - AluSp SINE Alu -179 134 1 345 249 82 79 chr4 191487028 191487369 -10840978 - HAL1 LINE L1 -1051 1456 1115 309 290 65 26 chr4 191488210 191488365 -10839982 + MIR SINE MIR 23 183 -79 1274 167 25 51 chr4 191488368 191488643 -10839704 - MLT1B LTR MaLR -122 268 1 235 323 13 58 chr4 191488904 191489059 -10839288 + L2 LINE L2 2560 2707 -607 2128 116 0 0 chr4 191489620 191489984 -10838363 - AluSp SINE Alu 0 364 1 203 61 30 0 chr4 191490353 191490386 -10837961 + (GA)n Simple_repeat Simple_repeat 1 34 0 2042 115 0 0 chr4 191490849 191491156 -10837191 + AluSx SINE Alu 5 311 0 1108 141 0 0 chr4 191491301 191491457 -10836890 - AluSq SINE Alu -157 156 1 1206 62 0 51 chr4 191491932 191492110 -10836237 + AluSg/x SINE Alu 142 310 0 224 351 11 0 chr4 191492983 191493077 -10835270 - MIR SINE MIR -19 243 149 294 326 57 96 chr4 191493285 191493567 -10834780 + L2 LINE L2 3001 3271 -1 301 284 0 23 chr4 191495762 191495850 -10832497 + MIR SINE MIR 112 197 -65 2114 132 0 0 chr4 191495984 191496313 -10832034 + AluSg SINE Alu 1 310 0 315 245 142 32 chr4 191496943 191497098 -10831249 - MIR SINE MIR -89 173 2 440 299 62 23 chr4 191498439 191498616 -10829731 + L3b LINE CR1 1358 1541 -42 2438 183 98 0 chr4 191498975 191499467 -10828880 - MER34 LTR ERV1 -2 540 1 2457 186 15 39 chr4 191500607 191500953 -10827394 + L1ME1 LINE L1 5446 5776 -390 1575 203 45 24 chr4 191500953 191501283 -10827064 + MER1B DNA MER1_type 1 337 0 2457 186 15 39 chr4 191501283 191501480 -10826867 + L1ME1 LINE L1 5776 5976 -190 725 204 19 13 chr4 191501518 191501675 -10826672 + L1MA10 LINE L1 6172 6329 -5 210 37 0 0 chr4 191501675 191501702 -10826645 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr4 191501759 191501781 -10826566 + AT_rich Low_complexity Low_complexity 1 22 0 1140 310 88 42 chr4 191503787 191504564 -10823783 + L2 LINE L2 1894 2705 -609 2362 108 0 0 chr4 191504573 191504879 -10823468 + AluSx SINE Alu 1 306 -6 288 301 245 7 chr4 191504936 191505079 -10823268 + MER5A DNA MER1_type 13 189 0 817 341 59 21 chr4 191505091 191505563 -10822784 + L2 LINE L2 2804 3293 -20 362 283 18 9 chr4 191505785 191505898 -10822449 + Charlie8 DNA MER1_type 113 226 -2191 3314 69 37 2 chr4 191506078 191506510 -10821837 + L1PA13 LINE L1 5715 6161 -2 612 292 102 0 chr4 191509469 191509705 -10818642 - L1ME3A LINE L1 -219 5951 5692 308 273 34 0 chr4 191509713 191509801 -10818546 - Zaphod DNA AcHobo 0 4031 3941 232 338 13 0 chr4 191510427 191510504 -10817843 - Zaphod DNA AcHobo -3952 79 2 762 198 130 26 chr4 191510545 191510723 -10817624 - MLT1C LTR MaLR 0 467 270 1160 190 0 67 chr4 191510723 191510976 -10817371 - MLT1B LTR MaLR 0 390 155 750 174 7 40 chr4 191511090 191511239 -10817108 - MLT1B LTR MaLR -246 144 1 390 249 156 25 chr4 191511243 191511467 -10816880 - MLT1C LTR MaLR -199 268 8 478 283 75 24 chr4 191511527 191511739 -10816608 - L1ME3A LINE L1 -532 5632 5410 2590 42 0 3 chr4 191513348 191513656 -10814691 + AluY SINE Alu 2 308 -3 411 249 190 23 chr4 191514145 191514366 -10813981 + MIR SINE MIR 5 262 0 1584 119 43 43 chr4 191514529 191514806 -10813541 + AluSc SINE Alu 1 277 -32 1287 44 0 22 chr4 191514807 191514989 -10813358 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 282 313 206 3 chr4 191515447 191515802 -10812545 + L2 LINE L2 2512 2970 -302 445 340 68 35 chr4 191515927 191516324 -10812023 - MLT1K LTR MaLR -99 489 80 921 156 43 85 chr4 191516623 191516778 -10811569 + MER3 DNA MER1_type 6 151 -58 2109 83 48 14 chr4 191516778 191517067 -10811280 - AluSc SINE Alu -10 299 1 921 156 43 85 chr4 191517067 191517122 -10811225 + MER3 DNA MER1_type 151 207 -2 247 226 32 0 chr4 191517069 191517131 -10811216 - MER3 DNA MER1_type -105 104 41 * 255 250 22 33 chr4 191518434 191518526 -10809821 + GA-rich Low_complexity Low_complexity 3 93 0 182 217 33 33 chr4 191520164 191520224 -10808123 + L2 LINE L2 123 182 -3132 297 0 0 0 chr4 191521855 191521888 -10806459 + (TG)n Simple_repeat Simple_repeat 2 34 0 386 267 169 41 chr4 191522879 191523074 -10805273 + MIR SINE MIR 2 221 -41 1971 197 56 27 chr4 191523093 191523575 -10804772 + Charlie1b DNA MER1_type 1 496 -27 358 283 50 0 chr4 191523788 191523887 -10804460 - MER5A DNA MER1_type -48 141 38 186 43 0 0 chr4 191525646 191525669 -10802678 + (A)n Simple_repeat Simple_repeat 1 23 0 306 0 0 0 chr4 191525679 191525713 -10802634 + (CA)n Simple_repeat Simple_repeat 2 35 0 278 189 0 56 chr4 191525714 191525804 -10802543 + (TA)n Simple_repeat Simple_repeat 2 86 0 193 105 26 53 chr4 191525811 191525887 -10802460 + (TATAA)n Simple_repeat Simple_repeat 5 78 0 2289 199 26 19 chr4 191525896 191526372 -10801975 - MLT2B2 LTR ERVL -35 464 1 227 292 0 62 chr4 191526550 191526646 -10801701 - L2 LINE L2 -4 3268 3179 850 276 70 8 chr4 191528280 191528701 -10799646 + LTR33 LTR ERVL 1 500 -21 1700 159 0 25 chr4 191528784 191529080 -10799267 - AluJo SINE Alu 0 302 14 1426 132 0 0 chr4 191529180 191529377 -10798970 + AluJo SINE Alu 86 325 0 290 0 0 47 chr4 191529377 191529420 -10798927 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 1212 209 4 29 chr4 191529426 191529665 -10798682 + MER8 DNA MER2_type 7 239 0 211 200 0 0 chr4 191529779 191529814 -10798533 + polypurine Low_complexity Low_complexity 2 36 0 2114 134 0 0 chr4 191531510 191531809 -10796538 + AluSx SINE Alu 1 299 -13 786 190 63 6 chr4 191532282 191532440 -10795907 + MIR SINE MIR 47 213 -49 809 258 108 37 chr4 191533297 191533592 -10794755 - MLT1I LTR MaLR -93 316 1 1035 291 65 33 chr4 191533807 191534326 -10794021 - MLT1H LTR MaLR -12 537 2 2272 83 0 7 chr4 191534648 191534968 -10793379 + AluY SINE Alu 2 319 0 455 285 169 25 chr4 191535263 191535453 -10792894 - L2 LINE L2 -262 3010 2849 2228 157 32 62 chr4 191535453 191535892 -10792455 - MSTB LTR MaLR 0 426 1 455 285 169 25 chr4 191535892 191536084 -10792263 - L2 LINE L2 -423 2849 2571 378 243 93 7 chr4 191536266 191536406 -10791941 + Charlie7 DNA MER1_type 6 157 -2455 23489 43 2 1 chr4 191536455 191539980 -10788367 - L1PA5 LINE L1 -2 6152 2626 1737 237 67 55 chr4 191540015 191540403 -10787944 - MLT1E1 LTR MaLR -8 646 245 2099 119 10 10 chr4 191540403 191540706 -10787641 - AluSq SINE Alu -10 303 1 1737 237 67 55 chr4 191540706 191540955 -10787392 - MLT1E1 LTR MaLR -409 245 1 1992 140 45 28 chr4 191541171 191541529 -10786818 - THE1B LTR MaLR 0 364 1 183 100 0 0 chr4 191543490 191543520 -10784827 + (T)n Simple_repeat Simple_repeat 1 30 0 22 56 0 0 chr4 191544328 191544364 -10783983 + AT_rich Low_complexity Low_complexity 1 36 0 203 224 0 15 chr4 191545066 191545133 -10783214 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 1144 166 5 37 chr4 191545148 191545160 -10783187 - MLT2C2 LTR ERVL -253 211 200 2181 110 10 3 chr4 191545160 191545459 -10782888 - AluSc SINE Alu -8 301 1 1144 166 5 37 chr4 191545459 191545663 -10782684 - MLT2C2 LTR ERVL -264 200 2 1363 272 70 17 chr4 191545675 191546298 -10782049 + L2 LINE L2 2466 3110 -203 304 297 119 27 chr4 191546304 191546489 -10781858 - MLT1J2 LTR MaLR -3 447 246 331 299 67 8 chr4 191546510 191546644 -10781703 - MLT1I LTR MaLR -204 205 64 523 229 17 8 chr4 191546720 191546838 -10781509 - MLT1A1 LTR MaLR -246 119 1 316 282 28 63 chr4 191546838 191546980 -10781367 + L2 LINE L2 3128 3264 -49 2226 107 0 0 chr4 191548574 191548873 -10779474 + AluSq SINE Alu 1 299 -14 205 246 18 0 chr4 191548897 191548954 -10779393 + L2 LINE L2 2007 2064 -1250 906 184 48 0 chr4 191549299 191549467 -10778880 + MER5A DNA MER1_type 14 189 0 415 285 198 16 chr4 191549769 191550011 -10778336 + LTR33 LTR ERVL 1 286 -235 1263 122 11 0 chr4 191550349 191550529 -10777818 - L1PA7 LINE L1 0 6154 5973 8721 76 14 22 chr4 191550630 191552264 -10776083 - L1P3 LINE L1 -407 5747 4131 2056 119 17 14 chr4 191552551 191552846 -10775501 + AluSx SINE Alu 6 301 -11 216 359 19 10 chr4 191554498 191554601 -10773746 + L3 LINE CR1 153 256 -1321 189 107 0 0 chr4 191557773 191557801 -10770546 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1909 126 46 3 chr4 191560071 191560356 -10767991 + AluSx SINE Alu 1 297 -15 207 0 0 0 chr4 191560895 191560918 -10767429 + (A)n Simple_repeat Simple_repeat 1 23 0 242 365 56 5 chr4 191561567 191561764 -10766583 + MIR SINE MIR 12 218 -44 265 377 8 0 chr4 191561814 191561936 -10766411 - L2 LINE L2 0 3313 3191 879 232 5 11 chr4 191561938 191562128 -10766219 - MER5A DNA MER1_type 0 189 1 279 0 0 0 chr4 191562147 191562178 -10766169 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1949 83 35 4 chr4 191562180 191562434 -10765913 - AluSc SINE Alu -30 279 18 1674 102 9 0 chr4 191562453 191562679 -10765668 - L1PA8 LINE L1 -3 6169 5942 313 168 168 53 chr4 191563224 191563243 -10765104 + MER5A DNA MER1_type 7 22 -167 2407 66 0 0 chr4 191563243 191563530 -10764817 + AluSq SINE Alu 20 306 -7 313 168 168 53 chr4 191563530 191563641 -10764706 + MER5A DNA MER1_type 22 152 -37 216 299 49 76 chr4 191563996 191564180 -10764167 - L2 LINE L2 -825 2489 2311 * 403 315 35 95 chr4 191564172 191564636 -10763711 - L2 LINE L2 -11 3261 2826 539 310 48 18 chr4 191564751 191564980 -10763367 - MLT1J LTR MaLR -173 338 103 399 326 133 5 chr4 191565616 191565812 -10762535 - MIR SINE MIR -18 244 24 299 250 31 21 chr4 191565963 191566059 -10762288 - MER103 DNA DNA 0 166 70 4903 131 60 16 chr4 191566062 191566903 -10761444 + L1PA16 LINE L1 5280 6157 -9 255 293 112 17 chr4 191567409 191567525 -10760822 - MIR SINE MIR -10 252 126 3109 143 64 23 chr4 191567670 191568202 -10760145 + MER41C LTR ERV1 1 554 0 938 229 8 55 chr4 191572779 191572938 -10755409 + MIR SINE MIR 3 149 -113 2104 131 0 6 chr4 191572938 191573251 -10755096 + AluSq SINE Alu 1 311 -2 938 229 8 55 chr4 191573251 191573327 -10755020 + MIR SINE MIR 149 227 -35 284 333 55 60 chr4 191573720 191573921 -10754426 - MIR SINE MIR -42 220 21 232 224 35 0 chr4 191574197 191574255 -10754092 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 316 246 16 0 chr4 191574321 191574443 -10753904 + (TA)n Simple_repeat Simple_repeat 1 124 0 27 96 0 0 chr4 191574586 191574669 -10753678 + AT_rich Low_complexity Low_complexity 1 83 0 384 203 0 0 chr4 191575179 191575253 -10753094 + MER97c DNA MER1_type? 469 542 -548 1791 211 49 8 chr4 191575260 191575630 -10752717 - MER97b DNA MER1_type? -658 395 11 2050 181 50 13 chr4 191576159 191576541 -10751806 + MSTD LTR MaLR 1 396 0 514 193 22 96 chr4 191576772 191576907 -10751440 + L2 LINE L2 3189 3313 0 2064 219 86 2 chr4 191577096 191577525 -10750822 - MLT1C LTR MaLR 0 467 3 712 289 50 16 chr4 191577934 191578176 -10750171 - MIR SINE MIR 0 262 13 491 328 73 20 chr4 191580169 191580373 -10747974 + MIR SINE MIR 21 235 -27 198 279 144 29 chr4 191580944 191581048 -10747299 + MIR SINE MIR 88 203 -59 275 318 111 48 chr4 191581132 191581321 -10747026 - MIR SINE MIR -6 256 56 427 273 78 45 chr4 191581491 191581699 -10746648 - MIR SINE MIR -30 232 15 437 0 19 0 chr4 191582591 191582644 -10745703 + (TG)n Simple_repeat Simple_repeat 2 55 0 198 0 0 0 chr4 191582729 191582751 -10745596 + (TTTTC)n Simple_repeat Simple_repeat 3 24 0 1875 148 0 7 chr4 191582766 191583050 -10745297 - AluJb SINE Alu -30 282 1 541 275 6 0 chr4 191583183 191583343 -10745004 + MER103 DNA DNA 6 166 0 24 32 0 0 chr4 191583988 191584019 -10744328 + AT_rich Low_complexity Low_complexity 1 31 0 250 340 92 7 chr4 191585043 191585120 -10743227 + MIR3 SINE MIR 15 84 -124 1165 144 11 0 chr4 191585120 191585308 -10743039 - L1PA16 LINE L1 -2 6164 5975 250 340 92 7 chr4 191585308 191585371 -10742976 + MIR3 SINE MIR 84 167 -41 971 318 76 77 chr4 191585576 191586678 -10741669 + L2 LINE L2 1882 2984 -329 645 329 62 22 chr4 191586809 191587180 -10741167 - L2 LINE L2 -6 3307 2922 210 398 21 11 chr4 191587217 191587310 -10741037 + L2 LINE L2 3137 3230 -42 2464 147 29 2 chr4 191587728 191588144 -10740203 + MER57B LTR ERV1 1 427 -7 21 36 0 0 chr4 191590550 191590578 -10737769 + AT_rich Low_complexity Low_complexity 1 28 0 562 212 119 0 chr4 191591684 191591802 -10736545 + FLAM_C SINE Alu 1 132 -1 50 18 0 0 chr4 191591802 191591859 -10736488 + AT_rich Low_complexity Low_complexity 1 57 0 228 347 178 14 chr4 191591906 191592125 -10736222 - MIR SINE MIR -1 261 7 764 219 12 18 chr4 191592180 191592344 -10736003 - MER5A DNA MER1_type -22 167 5 294 379 21 7 chr4 191592637 191592782 -10735565 + MIR SINE MIR 116 262 0 3134 280 156 23 chr4 191593137 191594772 -10733575 - L2 LINE L2 -991 2323 472 778 295 80 42 chr4 191595048 191595549 -10732798 - L1MC4a LINE L1 -1963 5845 5326 806 196 6 0 chr4 191595563 191595726 -10732621 - L1MD1 LINE L1 -5 6237 6074 28 48 0 0 chr4 191595786 191595828 -10732519 + AT_rich Low_complexity Low_complexity 1 42 0 348 389 35 7 chr4 191597263 191597407 -10730940 - L2 LINE L2 -1 3271 3124 23 0 0 0 chr4 191597544 191597567 -10730780 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 191597894 191597922 -10730425 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr4 191601004 191601025 -10727322 + (CA)n Simple_repeat Simple_repeat 1 21 0 189 0 0 0 chr4 191601999 191602020 -10726327 + (TG)n Simple_repeat Simple_repeat 2 22 0 266 293 0 20 chr4 191602025 191602124 -10726223 + (TATATG)n Simple_repeat Simple_repeat 4 100 0 477 296 184 15 chr4 191604703 191604899 -10723448 + MIR SINE MIR 8 236 -26 260 328 164 0 chr4 191605121 191605243 -10723104 - L2 LINE L2 -13 3259 3118 260 194 30 75 chr4 191607392 191607459 -10720888 + L2 LINE L2 3229 3292 -21 316 269 75 30 chr4 191607487 191607621 -10720726 - MIR3 SINE MIR -64 144 5 207 0 0 0 chr4 191608156 191608179 -10720168 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2137 88 0 4 chr4 191608182 191608455 -10719892 - AluSc SINE Alu -37 272 1 202 238 0 0 chr4 191608587 191608629 -10719718 - MIR SINE MIR -6 256 215 2364 92 0 3 chr4 191608696 191609001 -10719346 + AluSg SINE Alu 1 304 -6 422 279 76 35 chr4 191609383 191609555 -10718792 + MIR3 SINE MIR 25 203 -5 1951 145 0 37 chr4 191609912 191610236 -10718111 + AluJo SINE Alu 1 312 0 22 35 0 0 chr4 191613583 191613612 -10714735 + AT_rich Low_complexity Low_complexity 1 29 0 531 319 87 4 chr4 191613690 191613919 -10714428 - MIR SINE MIR 0 262 15 2025 101 14 25 chr4 191615515 191615834 -10712513 + AluSx SINE Alu 1 316 0 1086 76 0 0 chr4 191616382 191616526 -10711821 + L1PA10 LINE L1 6020 6163 -5 249 83 0 0 chr4 191616688 191616724 -10711623 + Alu SINE Alu 253 288 -15 1598 153 28 108 chr4 191616741 191617165 -10711182 - MLT1B LTR MaLR 0 390 1 513 216 245 0 chr4 191619427 191619566 -10708781 - MER5B DNA MER1_type -5 173 1 268 265 85 64 chr4 191619567 191619782 -10708565 + L1MC4a LINE L1 6722 6973 -812 182 318 61 0 chr4 191619951 191620017 -10708330 - L2 LINE L2 0 3313 3244 407 271 247 33 chr4 191620024 191620431 -10707916 - L2 LINE L2 -30 3283 2794 1376 274 118 40 chr4 191620438 191621169 -10707178 - L2 LINE L2 -624 2690 1903 2040 105 3 25 chr4 191621200 191621485 -10706862 + AluSc SINE Alu 1 279 -30 1052 31 23 0 chr4 191621485 191621613 -10706734 - BC200 scRNA scRNA -69 131 1 276 149 0 0 chr4 191621626 191621673 -10706674 + (A)n Simple_repeat Simple_repeat 1 47 0 665 255 39 39 chr4 191622422 191622653 -10705694 + MIR SINE MIR 22 252 -10 2571 138 42 0 chr4 191622898 191623305 -10705042 + MSTA LTR MaLR 3 426 -2 359 291 58 24 chr4 191623512 191623819 -10704528 - MLT1L LTR MaLR -4 611 215 1611 188 0 46 chr4 191624850 191625175 -10703172 + AluJb SINE Alu 1 310 -2 28 29 0 0 chr4 191625407 191625442 -10702905 + AT_rich Low_complexity Low_complexity 1 35 0 761 280 43 10 chr4 191625837 191626141 -10702206 - L1MC4a LINE L1 -1899 5909 5596 607 216 95 0 chr4 191626338 191626486 -10701861 - MER20B DNA MER1_type -612 171 10 840 231 34 63 chr4 191626832 191626862 -10701485 + MIR SINE MIR 2 31 -231 939 168 41 104 chr4 191626862 191627207 -10701140 - MER33 DNA MER1_type 0 324 2 840 231 34 63 chr4 191627207 191627445 -10700902 + MIR SINE MIR 31 262 0 446 281 0 39 chr4 191628164 191628292 -10700055 + L2 LINE L2 3187 3309 -4 195 184 0 0 chr4 191628409 191628447 -10699900 + (TA)n Simple_repeat Simple_repeat 2 39 0 34 24 0 0 chr4 191628986 191629027 -10699320 + AT_rich Low_complexity Low_complexity 1 41 0 2185 116 0 0 chr4 191629920 191630221 -10698126 + AluSq SINE Alu 1 301 -12 21 0 0 0 chr4 191632724 191632745 -10695602 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 191633698 191633719 -10694628 + AT_rich Low_complexity Low_complexity 1 21 0 600 238 8 107 chr4 191636304 191636548 -10691799 - L2 LINE L2 0 3313 3094 6609 20 3 0 chr4 191636581 191637343 -10691004 - L1PA3 LINE L1 -1 6154 5391 340 265 67 63 chr4 191637361 191637599 -10690748 - L2 LINE L2 -261 3052 2814 1502 84 31 18 chr4 191637713 191637939 -10690408 - L1PA11 LINE L1 -1 6173 5945 218 224 41 20 chr4 191639437 191639486 -10688861 - MIR SINE MIR -165 97 48 21 21 0 64 chr4 191639820 191639839 -10688508 + AT_rich Low_complexity Low_complexity 1 20 -24 2652 10 0 0 chr4 191639839 191640157 -10688190 + AluYb8 SINE Alu 1 318 0 21 21 0 64 chr4 191640157 191640183 -10688164 + AT_rich Low_complexity Low_complexity 20 44 0 1953 159 23 14 chr4 191640268 191640621 -10687726 - MLT1A1 LTR MaLR 0 365 10 859 226 34 5 chr4 191641583 191641787 -10686560 - MARNA DNA Mariner -201 385 176 396 350 97 60 chr4 191641881 191642314 -10686033 - L2 LINE L2 -164 3108 2692 2027 9 0 18 chr4 191642314 191642543 -10685804 + AluY SINE Alu 86 310 -1 396 350 97 60 chr4 191642543 191643469 -10684878 - L2 LINE L2 -580 2692 1698 308 245 49 43 chr4 191643579 191643742 -10684605 - L1ME4a LINE L1 -153 5968 5805 1206 261 74 19 chr4 191644205 191644676 -10683671 - HAL1 LINE L1 -671 1836 1340 374 353 38 35 chr4 191644933 191645222 -10683125 + LTR40a LTR ERVL 209 498 -21 1357 301 114 17 chr4 191645245 191646165 -10682182 - HAL1 LINE L1 -1229 1278 104 198 103 0 0 chr4 191646322 191646351 -10681996 + (T)n Simple_repeat Simple_repeat 1 29 0 2006 110 55 14 chr4 191646365 191646656 -10681691 - AluY SINE Alu -8 303 1 36 70 0 0 chr4 191647006 191647077 -10681270 + AT_rich Low_complexity Low_complexity 1 71 0 180 231 68 120 chr4 191647106 191647223 -10681124 - L2 LINE L2 0 3313 3203 458 288 43 6 chr4 191647245 191647408 -10680939 - MIR SINE MIR -16 246 78 3556 159 79 39 chr4 191647479 191648215 -10680132 - MER21B LTR ERV1 -1 862 98 329 235 10 31 chr4 191648325 191648423 -10679924 - MER21B LTR ERV1 -767 96 1 3934 124 22 5 chr4 191649148 191649771 -10678576 - MER41B LTR ERV1 -1 634 1 187 281 26 105 chr4 191650118 191650232 -10678115 - L2 LINE L2 -205 3067 2963 266 233 64 99 chr4 191650758 191650866 -10677481 - MLT1J2 LTR MaLR -312 138 75 2464 194 132 0 chr4 191650866 191651459 -10676888 - LTR51 LTR ERV1 0 671 1 266 233 64 99 chr4 191651459 191651522 -10676825 - MLT1J2 LTR MaLR -375 75 11 1738 147 8 4 chr4 191652263 191652529 -10675818 - AluJb SINE Alu -7 305 39 225 209 0 0 chr4 191652529 191652572 -10675775 - L2 LINE L2 -10 3303 3261 335 306 52 86 chr4 191655036 191655477 -10672870 - L1M4 LINE L1 -1310 4836 4411 1970 118 0 7 chr4 191659383 191659663 -10668684 + AluSx SINE Alu 20 297 -15 345 24 0 0 chr4 191661381 191661423 -10666924 + (CA)n Simple_repeat Simple_repeat 1 42 0 401 296 53 0 chr4 191714262 191714394 -10613953 - MIR SINE MIR -77 185 47 2196 112 0 19 chr4 191714399 191714712 -10613635 - AluSx SINE Alu -1 311 5 552 257 60 32 chr4 191715605 191715823 -10612524 + LTR16C LTR ERVL 251 474 -17 1975 125 3 14 chr4 191716081 191716399 -10611948 - AluSx SINE Alu 0 315 1 264 333 53 8 chr4 191716422 191716554 -10611793 + MIR SINE MIR 109 246 -16 441 0 0 0 chr4 191717797 191717846 -10610501 + (TG)n Simple_repeat Simple_repeat 2 50 0 207 260 39 26 chr4 191718880 191718957 -10609390 + L3 LINE CR1 1153 1230 -347 307 345 86 29 chr4 191719142 191719420 -10608927 + L2 LINE L2 2554 2847 -467 270 389 36 7 chr4 191719617 191719756 -10608591 + L2 LINE L2 3114 3256 -16 391 297 29 0 chr4 191720797 191720935 -10607412 - 7SK RNA RNA -50 143 2 183 311 82 0 chr4 191721898 191721959 -10606388 + L2 LINE L2 3151 3216 -56 315 71 0 0 chr4 191722000 191722042 -10606305 + (CA)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr4 191722234 191722258 -10606089 + AT_rich Low_complexity Low_complexity 1 24 0 640 270 119 34 chr4 191722258 191722876 -10605471 - L1MEd LINE L1 -1130 4999 4331 482 200 80 20 chr4 191723185 191723335 -10605012 - L1MEd LINE L1 -2168 3961 3803 278 352 81 44 chr4 191723401 191723674 -10604673 - MLT1I LTR MaLR -92 317 35 2189 115 0 3 chr4 191723696 191724000 -10604347 + AluSg SINE Alu 7 309 -1 313 342 26 19 chr4 191724037 191724192 -10604155 - L1MEd LINE L1 -2324 3805 3650 844 272 111 38 chr4 191724231 191725039 -10603308 - L1MEd LINE L1 -2469 3660 2794 310 244 67 44 chr4 191725038 191725173 -10603174 - L1MC4 LINE L1 -4 8038 7901 * 334 281 22 0 chr4 191725183 191725272 -10603075 - L1MC4 LINE L1 -1339 6703 6613 206 81 68 27 chr4 191725282 191725356 -10602991 + (TA)n Simple_repeat Simple_repeat 1 77 0 627 294 67 51 chr4 191725376 191726237 -10602110 - L1MEd LINE L1 -4679 1631 701 25 51 0 0 chr4 191727060 191727099 -10601248 + AT_rich Low_complexity Low_complexity 1 39 0 440 296 50 45 chr4 191727163 191727342 -10601005 + MER5A DNA MER1_type 7 186 -3 1740 180 35 52 chr4 191729413 191729546 -10598801 - MSTD LTR MaLR 0 396 262 2432 82 0 0 chr4 191729546 191729850 -10598497 - AluSg SINE Alu -6 304 1 1740 180 35 52 chr4 191729850 191730117 -10598230 - MSTD LTR MaLR -134 262 3 2422 30 0 0 chr4 191730234 191730530 -10597817 + AluY SINE Alu 16 311 0 22 0 0 0 chr4 191731044 191731066 -10597281 + AT_rich Low_complexity Low_complexity 1 22 0 292 311 10 10 chr4 191732518 191732621 -10595726 - L2 LINE L2 -1 3312 3210 225 282 35 12 chr4 191732599 191732684 -10595663 + MER5A DNA MER1_type 80 166 -23 * 360 203 13 25 chr4 191732633 191732712 -10595635 - MER5A DNA MER1_type -105 84 7 225 266 22 29 chr4 191733452 191733591 -10594756 + (TA)n Simple_repeat Simple_repeat 2 139 0 267 331 185 8 chr4 191734085 191734215 -10594132 - MIR3 SINE MIR -16 192 40 339 25 0 0 chr4 191735749 191735789 -10592558 + (TC)n Simple_repeat Simple_repeat 1 40 0 * 360 0 0 0 chr4 191735788 191735828 -10592519 + (CA)n Simple_repeat Simple_repeat 1 40 0 248 326 4 30 chr4 191735879 191736043 -10592304 + CT-rich Low_complexity Low_complexity 1 227 0 26 0 0 0 chr4 191736545 191736571 -10591776 + AT_rich Low_complexity Low_complexity 1 26 0 378 221 0 0 chr4 191737417 191737512 -10590835 + (CA)n Simple_repeat Simple_repeat 1 95 0 197 197 98 49 chr4 191738154 191738215 -10590132 - L2 LINE L2 -1 3271 3208 * 292 304 20 10 chr4 191738190 191738292 -10590055 + MIR SINE MIR 33 135 -73 394 257 124 62 chr4 191738525 191738696 -10589651 - MIR SINE MIR 0 262 74 658 122 47 0 chr4 191738696 191738803 -10589544 + L1MB4 LINE L1 6068 6179 -1 394 257 124 62 chr4 191738803 191738841 -10589506 - MIR SINE MIR -188 74 40 185 387 42 7 chr4 191741277 191741419 -10586928 - MIR SINE MIR -2 260 114 265 188 25 12 chr4 191741648 191741728 -10586619 + GA-rich Low_complexity Low_complexity 3 83 0 892 117 11 28 chr4 191741731 191741911 -10586436 + (GGAA)n Simple_repeat Simple_repeat 4 180 0 264 71 48 0 chr4 191741911 191741953 -10586394 + GA-rich Low_complexity Low_complexity 5 48 0 256 209 149 1 chr4 191742632 191742720 -10585627 + MIR SINE MIR 10 111 -97 * 513 314 143 23 chr4 191742709 191743136 -10585211 - L2 LINE L2 -1 3312 2835 965 141 0 0 chr4 191743189 191743331 -10585016 + FLAM_C SINE Alu 1 142 -1 751 191 0 40 chr4 191743365 191743538 -10584809 + AluSc SINE Alu 132 297 -12 403 320 26 6 chr4 191743547 191743703 -10584644 - L2 LINE L2 -536 2778 2620 797 196 0 0 chr4 191744420 191744563 -10583784 + FLAM_C SINE Alu 1 143 0 1022 156 0 28 chr4 191744581 191744761 -10583586 + AluSc SINE Alu 119 293 -16 349 305 32 7 chr4 191744776 191744930 -10583417 - L2 LINE L2 -537 2777 2620 571 148 119 0 chr4 191745102 191745203 -10583144 - AluJb SINE Alu -28 284 172 196 319 50 25 chr4 191745453 191745572 -10582775 - L2 LINE L2 -6 3307 3186 275 301 67 34 chr4 191745784 191745993 -10582354 - L2 LINE L2 -458 2856 2641 1097 108 0 6 chr4 191746097 191746254 -10582093 + AluSg/x SINE Alu 151 306 -6 242 170 38 0 chr4 191748534 191748587 -10579760 + CT-rich Low_complexity Low_complexity 1 55 0 187 258 0 30 chr4 191749581 191749647 -10578700 - MIR SINE MIR -10 252 189 204 216 0 0 chr4 191751411 191751462 -10576885 + GA-rich Low_complexity Low_complexity 1 51 0 201 281 251 9 chr4 191753697 191753928 -10574419 + L2 LINE L2 1923 2209 -1105 183 318 103 37 chr4 191754048 191754155 -10574192 + L2 LINE L2 3116 3229 -43 563 213 40 121 chr4 191755070 191755342 -10573005 - L1ME3A LINE L1 -5 6165 5916 873 87 40 20 chr4 191756481 191756631 -10571716 + L1MA1 LINE L1 6150 6302 0 2074 236 94 31 chr4 191756994 191758424 -10569923 - L1ME2 LINE L1 -182 6051 4527 2607 248 31 53 chr4 191758431 191759305 -10569042 - L1ME2 LINE L1 -1878 4337 3490 1647 66 0 0 chr4 191759305 191759518 -10568829 - L1PA13 LINE L1 -3 6160 5948 2607 248 31 53 chr4 191759518 191759722 -10568625 - L1ME2 LINE L1 -2725 3490 3283 1544 239 21 39 chr4 191759874 191760062 -10568285 - L1ME2 LINE L1 -2935 3280 3090 2127 116 0 3 chr4 191760062 191760356 -10567991 - AluSx SINE Alu -19 293 1 1544 239 21 39 chr4 191760356 191760727 -10567620 - L1ME2 LINE L1 -3125 3090 2731 261 0 0 0 chr4 191760729 191760758 -10567589 + (TG)n Simple_repeat Simple_repeat 1 29 0 185 62 0 31 chr4 191760762 191760794 -10567553 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2040 106 36 0 chr4 191760796 191761070 -10567277 - AluSg SINE Alu -26 284 1 1094 89 0 0 chr4 191761070 191761205 -10567142 - AluSq/x SINE Alu -176 136 2 508 267 40 49 chr4 191761242 191761489 -10566858 - L1ME2 LINE L1 -3516 2699 2455 610 354 22 0 chr4 191761711 191762022 -10566325 - L1ME2 LINE L1 -6030 366 49 645 271 89 37 chr4 191764574 191764924 -10563423 - MLT1J LTR MaLR -106 405 38 243 226 32 0 chr4 191765293 191765355 -10562992 + GA-rich Low_complexity Low_complexity 1 64 0 648 215 13 4 chr4 191765642 191765878 -10562469 + (TCTA)n Simple_repeat Simple_repeat 1 238 0 250 250 38 25 chr4 191766248 191766328 -10562019 + GA-rich Low_complexity Low_complexity 4 84 0 215 212 10 71 chr4 191767308 191767407 -10560940 + (TAAA)n Simple_repeat Simple_repeat 1 93 0 180 321 18 0 chr4 191768499 191768555 -10559792 - MIR SINE MIR -11 251 195 214 401 129 7 chr4 191769543 191769690 -10558657 + MIR3 SINE MIR 41 205 -3 2400 37 0 24 chr4 191770460 191770756 -10557591 - AluY SINE Alu -14 297 9 1980 151 37 0 chr4 191771280 191771658 -10556689 - L1MB4 LINE L1 -1 6179 5788 21 0 0 0 chr4 191771908 191771929 -10556418 + AT_rich Low_complexity Low_complexity 1 21 0 2271 91 0 0 chr4 191772261 191772548 -10555799 - AluSc SINE Alu -22 287 1 2126 128 0 13 chr4 191773036 191773341 -10555006 - AluSx SINE Alu -11 301 1 222 91 0 0 chr4 191774981 191775014 -10553333 + (CTATT)n Simple_repeat Simple_repeat 3 35 0 2150 120 0 3 chr4 191775015 191775315 -10553032 - AluSx SINE Alu -13 299 1 2281 183 55 31 chr4 191775433 191775474 -10552873 - MLT2B1 LTR ERVL 0 520 481 690 100 0 0 chr4 191775474 191775574 -10552773 + (TA)n Simple_repeat Simple_repeat 2 101 0 249 33 0 0 chr4 191775573 191775603 -10552744 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 2281 183 55 31 chr4 191775574 191776069 -10552278 - MLT2B1 LTR ERVL -39 481 1 1973 165 53 22 chr4 191776083 191776496 -10551851 + MSTB LTR MaLR 1 426 0 248 302 161 25 chr4 191778369 191778723 -10549624 + L2 LINE L2 1917 2318 -996 1141 189 78 92 chr4 191778788 191779158 -10549189 + MLT1A1 LTR MaLR 1 365 0 2059 151 3 3 chr4 191782514 191782826 -10545521 - AluJo SINE Alu 0 312 1 317 387 8 0 chr4 191783263 191783382 -10544965 + MIR3 SINE MIR 87 206 -2 216 0 0 0 chr4 191785243 191785267 -10543080 + (CA)n Simple_repeat Simple_repeat 2 25 0 22 70 0 0 chr4 191786320 191786363 -10541984 + AT_rich Low_complexity Low_complexity 1 43 0 2196 89 0 14 chr4 191786534 191786827 -10541520 - AluSc SINE Alu 0 309 21 222 37 0 0 chr4 191789095 191789122 -10539225 + (CA)n Simple_repeat Simple_repeat 1 27 0 1443 90 0 0 chr4 191789200 191789412 -10538935 - L1P LINE L1 -856 5290 5079 * 2868 63 21 0 chr4 191789410 191789793 -10538554 + L1PA8 LINE L1 5649 6039 -133 330 267 69 0 chr4 191790548 191790649 -10537698 + MIR3 SINE MIR 73 180 -28 1006 295 146 56 chr4 191790749 191791348 -10536999 + L2 LINE L2 2034 2578 -735 631 194 0 0 chr4 191791348 191791477 -10536870 + L1MA3 LINE L1 6177 6305 0 1006 295 146 56 chr4 191791477 191791743 -10536604 + L2 LINE L2 2578 2819 -494 2054 123 21 66 chr4 191791743 191792124 -10536223 + THE1B LTR MaLR 1 364 0 1006 295 146 56 chr4 191792124 191792351 -10535996 + L2 LINE L2 2819 3305 -8 322 128 0 0 chr4 191792657 191792704 -10535643 - AluJ/FRAM SINE Alu -31 271 225 770 146 8 0 chr4 191793690 191793820 -10534527 - FLAM_A SINE Alu -4 138 8 1594 135 0 27 chr4 191793859 191794119 -10534228 - AluSx SINE Alu -11 301 49 477 283 43 32 chr4 191794239 191794426 -10533921 - Charlie8 DNA MER1_type -2143 274 86 34 42 0 0 chr4 191795412 191795460 -10532887 + AT_rich Low_complexity Low_complexity 1 48 0 325 297 152 14 chr4 191796192 191796330 -10532017 + MIR SINE MIR 36 192 -70 449 281 89 65 chr4 191797237 191797266 -10531081 - L1ME4a LINE L1 -140 5981 5954 2013 90 102 0 chr4 191797266 191797532 -10530815 + AluSg SINE Alu 1 293 -17 449 281 89 65 chr4 191797532 191797599 -10530748 - L1ME4a LINE L1 -167 5954 5890 321 26 0 0 chr4 191797599 191797637 -10530710 + (TG)n Simple_repeat Simple_repeat 2 39 0 753 175 8 0 chr4 191797638 191797758 -10530589 - FLAM_C SINE Alu -12 121 1 449 281 89 65 chr4 191797758 191798028 -10530319 - L1ME4a LINE L1 -230 5891 5603 1853 121 82 18 chr4 191799487 191799769 -10528578 + AluSx SINE Alu 1 300 -12 2368 133 137 6 chr4 191800312 191800794 -10527553 - LTR10A LTR ERV1 -64 545 1 259 122 41 0 chr4 191800817 191800866 -10527481 - LTR10B LTR ERV1 -496 51 1 342 367 51 5 chr4 191800968 191801164 -10527183 + L2 LINE L2 2587 2791 -523 210 343 0 0 chr4 191801834 191801904 -10526443 - MIR SINE MIR -6 256 187 394 176 0 29 chr4 191802616 191802718 -10525629 + GA-rich Low_complexity Low_complexity 2 100 0 285 318 68 15 chr4 191802912 191803044 -10525303 + L2 LINE L2 2683 2821 -493 292 316 46 122 chr4 191803071 191803400 -10524947 + L2 LINE L2 2920 3223 -49 2166 108 10 0 chr4 191803578 191803875 -10524472 + AluSc SINE Alu 1 300 -9 544 255 13 82 chr4 191804063 191804294 -10524053 - L2 LINE L2 -7 3306 3092 2278 129 0 0 chr4 191804632 191804943 -10523404 - AluSx SINE Alu -1 311 1 21 57 0 0 chr4 191805231 191805266 -10523081 + AT_rich Low_complexity Low_complexity 1 35 0 29 28 0 0 chr4 191805868 191805904 -10522443 + AT_rich Low_complexity Low_complexity 1 36 0 252 0 0 0 chr4 191806356 191806384 -10521963 + (TG)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr4 191806696 191806718 -10521629 + AT_rich Low_complexity Low_complexity 1 22 0 22757 33 1 0 chr4 191806718 191810244 -10518103 - L1PA3 LINE L1 -3 6152 2624 23 0 0 0 chr4 191810790 191810813 -10517534 + AT_rich Low_complexity Low_complexity 1 23 0 1973 216 17 19 chr4 191810952 191811416 -10516931 + LTR40c LTR ERVL 1 463 -2 29607 100 7 21 chr4 191813694 191820156 -10508191 + L1PA7 LINE L1 2 6467 -2 252 0 0 0 chr4 191821030 191821058 -10507289 + (TG)n Simple_repeat Simple_repeat 1 28 0 184 256 23 0 chr4 191822982 191823025 -10505322 + L2 LINE L2 3266 3309 -4 2108 116 7 10 chr4 191823091 191823383 -10504964 + AluSx SINE Alu 1 291 -21 230 327 67 123 chr4 191823514 191823814 -10504533 - L2 LINE L2 -18 3254 2972 663 341 128 16 chr4 191823820 191824551 -10503796 - L2 LINE L2 -28 3285 2461 292 360 0 9 chr4 191825138 191825249 -10503098 - MIR3 SINE MIR -2 206 97 202 324 128 20 chr4 191825333 191825481 -10502866 + MIR SINE MIR 98 261 -1 456 287 136 68 chr4 191827366 191827690 -10500657 - L2 LINE L2 -2 3311 2966 1060 297 76 8 chr4 191827734 191828091 -10500256 - L2 LINE L2 -581 2733 2353 296 306 100 19 chr4 191828186 191828497 -10499850 - L1MEd LINE L1 -4892 1227 892 446 350 110 46 chr4 191828522 191829241 -10499106 - L1MEd LINE L1 -5248 871 107 2627 168 32 16 chr4 191831054 191831560 -10496787 - MLT2B2 LTR ERVL -1 514 1 183 186 0 0 chr4 191832842 191832885 -10495462 + (CA)n Simple_repeat Simple_repeat 2 44 0 433 331 93 10 chr4 191833065 191833367 -10494980 - L1MC/D LINE L1 -2047 5761 5435 304 308 9 9 chr4 191833946 191834053 -10494294 + MIR SINE MIR 48 154 -108 182 280 27 27 chr4 191834096 191834171 -10494176 - L2 LINE L2 -20 3252 3178 200 215 25 114 chr4 191834510 191834589 -10493758 - L3b LINE CR1 -271 1312 1241 24 32 0 0 chr4 191835370 191835401 -10492946 + AT_rich Low_complexity Low_complexity 1 31 0 2270 95 0 7 chr4 191835401 191835697 -10492650 - AluSg SINE Alu -16 294 1 998 263 115 46 chr4 191836391 191836963 -10491384 + L2 LINE L2 2440 3099 -214 3058 83 30 7 chr4 191836963 191837399 -10490948 + LTR7 LTR ERV1 3 448 -2 998 263 115 46 chr4 191837399 191837610 -10490737 + L2 LINE L2 3099 3294 -19 2025 146 0 3 chr4 191837742 191838036 -10490311 + AluJb SINE Alu 3 295 -17 194 305 74 53 chr4 191839984 191840079 -10488268 - MIR SINE MIR -59 203 107 353 279 29 19 chr4 191840105 191840209 -10488138 - MIR SINE MIR -12 250 146 270 160 0 0 chr4 191840237 191840287 -10488060 + (CACCAT)n Simple_repeat Simple_repeat 1 50 0 1229 93 6 0 chr4 191840526 191840688 -10487659 + AluSg/x SINE Alu 144 306 -3 428 206 38 44 chr4 191840745 191840766 -10487581 - L1MA10 LINE L1 0 6334 6314 2456 211 125 55 chr4 191840766 191842021 -10486326 - L1ME1 LINE L1 -8 6158 4824 412 243 75 0 chr4 191842360 191842467 -10485880 - L2 LINE L2 -266 3047 2933 1893 163 64 3 chr4 191842946 191843290 -10485057 - MLT1A1 LTR MaLR 0 365 1 478 285 8 15 chr4 191843406 191843536 -10484811 + L2 LINE L2 3180 3308 -5 433 266 25 124 chr4 191846140 191846422 -10481925 + L2 LINE L2 3014 3267 -5 2028 84 4 0 chr4 191848399 191848662 -10479685 - AluY SINE Alu -9 302 39 21 36 0 0 chr4 191852093 191852121 -10476226 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 191852185 191852208 -10476139 + AT_rich Low_complexity Low_complexity 1 23 0 241 230 0 40 chr4 191852843 191852917 -10475430 - L1MC4 LINE L1 -646 7396 7326 293 222 3 3 chr4 191852926 191853013 -10475334 - L1MC5 LINE L1 -733 7228 7157 305 198 12 0 chr4 191853920 191854006 -10474341 + CT-rich Low_complexity Low_complexity 2 88 0 207 338 63 42 chr4 191854280 191854422 -10473925 + MIR SINE MIR 112 256 -6 770 127 13 33 chr4 191855668 191855818 -10472529 + L1MB1 LINE L1 6016 6162 -6 281 26 0 26 chr4 191855936 191855975 -10472372 + (TC)n Simple_repeat Simple_repeat 2 39 0 215 205 0 0 chr4 191855982 191856021 -10472326 + (TG)n Simple_repeat Simple_repeat 2 40 0 186 318 100 27 chr4 191856308 191856418 -10471929 + MIR SINE MIR 37 154 -108 21 36 0 0 chr4 191857804 191857832 -10470515 + AT_rich Low_complexity Low_complexity 1 28 0 925 194 0 0 chr4 191857927 191858092 -10470255 - FRAM SINE Alu 0 166 2 489 250 35 0 chr4 191858211 191858327 -10470020 + L2 LINE L2 3193 3312 -1 1691 189 0 10 chr4 191858555 191858851 -10469496 - AluJo SINE Alu -19 293 1 1633 158 13 60 chr4 191859121 191859438 -10468909 + AluJb SINE Alu 1 302 -10 236 285 92 53 chr4 191860224 191860431 -10467916 - L2 LINE L2 -37 3276 3062 1289 150 29 124 chr4 191860431 191860737 -10467610 + AluJo SINE Alu 1 277 -35 293 333 54 0 chr4 191860782 191860893 -10467454 - L2 LINE L2 -254 3059 2943 605 300 78 8 chr4 191860901 191861158 -10467189 - LTR16B LTR ERVL -65 399 125 481 276 52 73 chr4 191861214 191861267 -10467080 - L2 LINE L2 -379 2935 2882 2343 105 0 0 chr4 191861267 191861571 -10466776 + AluSx SINE Alu 1 304 -8 481 276 52 73 chr4 191861571 191861749 -10466598 - L2 LINE L2 -432 2882 2709 1943 169 32 53 chr4 191861774 191862117 -10466230 - L1PB4 LINE L1 -11 6145 5813 2231 123 0 0 chr4 191862117 191862419 -10465928 - AluSx SINE Alu -10 302 1 1943 169 32 53 chr4 191862419 191862549 -10465798 - L1PB4 LINE L1 -343 5813 5682 660 264 33 45 chr4 191862553 191862795 -10465552 - L2 LINE L2 -607 2707 2469 1187 133 10 100 chr4 191862802 191863102 -10465245 - MLT1B LTR MaLR -7 383 111 1933 150 3 0 chr4 191863113 191863400 -10464947 - AluSx SINE Alu -24 288 1 248 235 59 0 chr4 191863458 191863526 -10464821 - MLT1B LTR MaLR -395 72 1 885 260 169 44 chr4 191863527 191863935 -10464412 - L2 LINE L2 -850 2464 2006 626 280 81 11 chr4 191864037 191864223 -10464124 + MIR SINE MIR 1 199 -63 241 262 49 0 chr4 191864317 191864378 -10463969 - MIR SINE MIR -152 110 47 325 294 18 22 chr4 191865146 191865302 -10463045 - MIR3 SINE MIR -5 203 45 2312 104 3 0 chr4 191865348 191865657 -10462690 + AluSg SINE Alu 1 310 0 522 0 0 0 chr4 191866079 191866137 -10462210 + (TA)n Simple_repeat Simple_repeat 2 59 0 406 245 35 0 chr4 191866697 191866809 -10461538 - MIR SINE MIR -46 162 41 209 196 0 0 chr4 191866825 191866871 -10461476 + T-rich Low_complexity Low_complexity 3 48 0 268 177 51 51 chr4 191867420 191867499 -10460848 - MER116 DNA Mariner -1 79 1 405 0 0 0 chr4 191871771 191871816 -10456531 + (TG)n Simple_repeat Simple_repeat 1 45 0 240 212 47 47 chr4 191873866 191873951 -10454396 + L1ME4a LINE L1 5964 6048 -73 180 283 55 48 chr4 191873968 191874113 -10454234 + L2 LINE L2 2263 2408 -906 439 188 12 12 chr4 191874158 191874238 -10454109 - MIR SINE MIR -163 99 20 653 299 6 0 chr4 191875531 191875708 -10452639 - MIR SINE MIR 0 262 85 26 0 0 0 chr4 191880701 191880727 -10447620 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 191880847 191880869 -10447478 + AT_rich Low_complexity Low_complexity 1 22 0 281 238 0 0 chr4 191881471 191881551 -10446796 + T-rich Low_complexity Low_complexity 1 80 0 2313 118 0 3 chr4 191881988 191882301 -10446046 + AluSx SINE Alu 1 312 0 230 327 173 0 chr4 191882666 191882770 -10445577 - MIR SINE MIR -17 245 124 466 313 185 31 chr4 191883081 191883874 -10444473 - L2 LINE L2 -18 3295 2375 273 200 0 31 chr4 191884708 191884773 -10443574 + MIR SINE MIR 109 171 -91 503 338 61 0 chr4 191885795 191886008 -10442339 + MIR SINE MIR 2 227 -35 189 107 0 0 chr4 191887728 191887756 -10440591 + (T)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr4 191890217 191890245 -10438102 + AT_rich Low_complexity Low_complexity 1 28 0 9168 194 25 19 chr4 191890657 191892580 -10435767 - L1 LINE L1 -1600 4546 2606 1468 172 143 29 chr4 191892580 191892964 -10435383 - MSTA LTR MaLR 0 428 1 9168 194 25 19 chr4 191892964 191893242 -10435105 - L1 LINE L1 -3540 2606 2331 27 62 0 0 chr4 191893362 191893410 -10434937 + AT_rich Low_complexity Low_complexity 1 48 0 252 0 0 0 chr4 191893647 191893675 -10434672 + (TTG)n Simple_repeat Simple_repeat 3 30 0 21030 138 15 4 chr4 191893676 191897541 -10430806 - L1PA10 LINE L1 -11 6157 2233 1899 159 58 3 chr4 191897541 191897886 -10430461 - THE1B LTR MaLR 0 364 1 21030 138 15 4 chr4 191897886 191898588 -10429759 - L1PA10 LINE L1 -3935 2233 1540 470 324 98 70 chr4 191898841 191899369 -10428978 + L2 LINE L2 2599 3159 -113 2326 86 3 0 chr4 191899369 191899661 -10428686 - AluSx SINE Alu -19 293 1 470 324 98 70 chr4 191899661 191899779 -10428568 + L2 LINE L2 3159 3272 0 2197 113 3 3 chr4 191900316 191900618 -10427729 - AluSx SINE Alu -10 302 1 1077 158 0 0 chr4 191901001 191901165 -10427182 - FRAM SINE Alu -1 165 2 24 32 0 0 chr4 191901481 191901512 -10426835 + AT_rich Low_complexity Low_complexity 1 31 0 622 280 43 28 chr4 191901532 191901743 -10426604 - MIR SINE MIR -31 231 18 2260 93 3 0 chr4 191901914 191902203 -10426144 - AluSq SINE Alu -23 290 1 212 83 0 28 chr4 191903603 191903639 -10424708 + (TG)n Simple_repeat Simple_repeat 2 36 0 9160 120 8 0 chr4 191904250 191904273 -10424074 - L1PA8A LINE L1 -1 6445 6424 189 0 0 0 chr4 191904273 191904294 -10424053 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 9160 120 8 0 chr4 191904294 191906433 -10421914 - L1PA8A LINE L1 -22 6424 4274 13763 151 14 21 chr4 191906434 191910333 -10418014 - L1PA8A LINE L1 -2528 3933 1 30 97 0 0 chr4 191910586 191910679 -10417668 + AT_rich Low_complexity Low_complexity 1 93 0 907 331 176 18 chr4 191911010 191911849 -10416498 + L2 LINE L2 1911 2882 -432 1154 264 89 43 chr4 191911855 191912416 -10415931 + MLT1G1 LTR MaLR 9 595 0 246 23 70 0 chr4 191913166 191913209 -10415138 + A-rich Low_complexity Low_complexity 3 48 0 213 183 43 43 chr4 191914041 191914134 -10414213 + (TA)n Simple_repeat Simple_repeat 2 94 0 352 281 0 0 chr4 191914134 191914223 -10414124 - L1MC4 LINE L1 -1339 6703 6615 366 269 121 0 chr4 191914348 191914489 -10413858 - MER117 DNA MER1_type -37 160 3 243 0 0 0 chr4 191915571 191915598 -10412749 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2087 82 45 0 chr4 191915600 191915867 -10412480 - AluSg SINE Alu -31 279 1 335 368 129 0 chr4 191918795 191918988 -10409359 - MIR SINE MIR 0 262 45 1661 137 50 36 chr4 191919693 191919995 -10408352 - AluJb SINE Alu 0 306 1 2243 100 0 10 chr4 191920103 191920403 -10407944 + AluSx SINE Alu 1 297 -15 1819 109 20 3 chr4 191920422 191920716 -10407631 + L1MA5A LINE L1 5999 6297 0 325 304 93 25 chr4 191920747 191920908 -10407439 + L2 LINE L2 2710 2881 -433 24 0 0 0 chr4 191920918 191920942 -10407405 + AT_rich Low_complexity Low_complexity 1 24 0 2099 140 102 24 chr4 191920960 191921382 -10406965 - L1PA16 LINE L1 -3 6163 5709 205 375 83 72 chr4 191921411 191921760 -10406587 + L2 LINE L2 2920 3272 0 3503 149 43 21 chr4 191921891 191922568 -10405779 + L1PA16 LINE L1 5471 6162 -4 21 0 0 0 chr4 191923889 191923910 -10404437 + AT_rich Low_complexity Low_complexity 1 21 0 6234 120 16 36 chr4 191924574 191925041 -10403306 - L1MA2 LINE L1 0 6304 5829 2548 62 0 0 chr4 191925041 191925348 -10402999 - AluY SINE Alu -4 307 1 6234 120 16 36 chr4 191925348 191925844 -10402503 - L1MA2 LINE L1 -475 5829 5325 3282 59 5 5 chr4 191925844 191926268 -10402079 - L1PA6 LINE L1 0 6154 5731 6234 120 16 36 chr4 191926268 191927091 -10401256 - L1MA2 LINE L1 -979 5325 4541 1198 233 4 0 chr4 191930004 191930236 -10398111 + AluJb SINE Alu 1 233 -79 348 312 83 19 chr4 191930448 191930605 -10397742 + MIR SINE MIR 23 189 -73 1447 182 30 8 chr4 191930683 191930787 -10397560 + AluJo SINE Alu 25 125 -187 294 29 0 0 chr4 191930787 191930822 -10397525 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1447 182 30 8 chr4 191930822 191930981 -10397366 + AluJo SINE Alu 125 294 -18 2287 103 3 3 chr4 191931519 191931820 -10396527 + AluSc SINE Alu 1 301 -8 855 248 39 0 chr4 191933984 191934190 -10394157 + MER20 DNA MER1_type 6 219 0 560 241 0 0 chr4 191935051 191935163 -10393184 - FLAM_A SINE Alu -30 112 1 204 313 0 31 chr4 191935341 191935405 -10392942 + L2 LINE L2 3252 3313 0 203 261 169 82 chr4 191936026 191936210 -10392137 + L2 LINE L2 2699 2898 -416 308 270 34 11 chr4 191936324 191936413 -10391934 - L2 LINE L2 -9 3263 3173 663 148 34 0 chr4 191936542 191936672 -10391675 + L1MA2 LINE L1 6047 6180 -124 1052 115 6 13 chr4 191936693 191936849 -10391498 + L1MA2 LINE L1 6150 6304 0 183 314 170 20 chr4 191936875 191936988 -10391359 - L2 LINE L2 -191 3081 2952 1954 131 11 3 chr4 191937112 191937395 -10390952 + AluJb SINE Alu 3 331 0 397 0 0 0 chr4 191937395 191937439 -10390908 + (TAAA)n Simple_repeat Simple_repeat 3 156 0 189 0 0 0 chr4 191939352 191939373 -10388974 + (GA)n Simple_repeat Simple_repeat 2 22 0 1826 141 36 16 chr4 191939455 191939761 -10388586 - AluJo SINE Alu 0 312 1 336 24 0 0 chr4 191941006 191941047 -10387300 + (TG)n Simple_repeat Simple_repeat 1 41 0 1840 134 0 76 chr4 191941693 191942007 -10386340 + AluJo SINE Alu 7 296 -16 1644 185 21 0 chr4 191942034 191942320 -10386027 + AluJo SINE Alu 14 305 -7 2157 168 3 29 chr4 191942331 191942677 -10385670 - MER1B DNA MER1_type 0 337 1 1519 170 20 20 chr4 191943738 191944032 -10384315 + AluJo SINE Alu 2 295 -17 21 0 0 0 chr4 191944036 191944057 -10384290 + AT_rich Low_complexity Low_complexity 1 21 0 283 270 60 50 chr4 191945718 191945818 -10382529 - L2 LINE L2 -12 3301 3201 481 251 172 12 chr4 191946065 191946228 -10382119 + MIR SINE MIR 19 207 -55 2499 40 7 17 chr4 191946357 191946656 -10381691 + AluY SINE Alu 1 296 -15 2146 143 113 42 chr4 191947038 191947088 -10381259 - MSTA LTR MaLR 0 428 383 2112 134 0 0 chr4 191947088 191947393 -10380954 - AluSx SINE Alu -6 306 2 2146 143 113 42 chr4 191947393 191947742 -10380605 - MSTA LTR MaLR -45 383 1 1776 222 31 5 chr4 191947986 191948374 -10379973 - L1M4 LINE L1 -445 5729 5332 193 361 0 0 chr4 191948481 191948542 -10379805 + MIR SINE MIR 42 102 -106 25 0 0 0 chr4 191948599 191948624 -10379723 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr4 191948659 191948682 -10379665 + (TA)n Simple_repeat Simple_repeat 2 24 0 2394 49 0 3 chr4 191948688 191948973 -10379374 + AluY SINE Alu 1 284 -27 201 343 143 50 chr4 191950093 191950233 -10378114 - MIR SINE MIR -87 175 23 279 122 0 0 chr4 191951746 191951795 -10376552 + (CA)n Simple_repeat Simple_repeat 2 50 0 321 299 71 47 chr4 191952002 191952213 -10376134 - L2 LINE L2 -206 3066 2851 1909 150 7 0 chr4 191952396 191952682 -10375665 + AluSx SINE Alu 1 288 -24 1249 111 0 0 chr4 191953493 191953665 -10374682 - AluSg/x SINE Alu 0 312 141 1062 166 54 10 chr4 191953667 191953872 -10374475 - L1MA4 LINE L1 -19 6281 6068 202 28 28 28 chr4 191953992 191954028 -10374319 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 327 123 3 0 chr4 191954449 191954503 -10373844 + MLT1B LTR MaLR 241 310 -79 1951 170 45 24 chr4 191954885 191955075 -10373272 + MLT1B LTR MaLR 6 190 -200 2398 124 16 29 chr4 191955075 191955455 -10372892 - THE1C LTR MaLR 0 375 1 1951 170 45 24 chr4 191955455 191955641 -10372706 + MLT1B LTR MaLR 190 390 0 251 210 16 65 chr4 191955945 191956007 -10372340 - MIR3 SINE MIR -22 186 128 455 239 54 65 chr4 191957129 191957251 -10371096 - Charlie8 DNA MER1_type -122 219 98 2356 92 0 7 chr4 191957251 191957557 -10370790 - AluSc SINE Alu -5 304 1 455 239 54 65 chr4 191957557 191957618 -10370729 - Charlie8 DNA MER1_type -243 98 38 1540 169 81 11 chr4 191957979 191958252 -10370095 - AluJo SINE Alu -20 292 1 2212 91 37 0 chr4 191958264 191958561 -10369786 - AluSc SINE Alu -1 308 1 834 257 82 0 chr4 191958767 191958973 -10369374 - MER58A DNA MER1_type 0 224 2 183 360 0 0 chr4 191959633 191959683 -10368664 - L2 LINE L2 -252 3061 3012 * 489 282 48 8 chr4 191959680 191959804 -10368543 - L2 LINE L2 0 3313 3185 195 382 9 18 chr4 191959798 191959908 -10368439 - L2 LINE L2 -255 3017 2909 * 372 246 100 0 chr4 191959974 191960084 -10368263 + MER94 DNA DNA 5 125 -9 1028 171 24 47 chr4 191960084 191960295 -10368052 + AluJo SINE Alu 87 292 -20 2198 111 3 7 chr4 191960304 191960610 -10367737 + AluSc SINE Alu 4 308 -1 333 337 15 55 chr4 191960650 191960923 -10367424 - L2 LINE L2 -590 2724 2463 2276 78 32 0 chr4 191961294 191961577 -10366770 + AluY SINE Alu 1 292 -19 335 295 126 14 chr4 191962349 191962627 -10365720 + L1ME4a LINE L1 5801 6109 -12 1727 180 3 0 chr4 191962769 191963063 -10365284 + AluJb SINE Alu 1 295 -17 376 318 92 0 chr4 191963073 191963247 -10365100 + MIR SINE MIR 69 257 -5 2406 88 0 28 chr4 191963354 191963671 -10364676 + AluSg SINE Alu 1 308 -2 356 143 0 83 chr4 191964094 191964131 -10364216 - L1MC5 LINE L1 -53 7908 7880 2467 148 11 8 chr4 191964131 191964495 -10363852 - MLT1A1 LTR MaLR 0 365 1 356 143 0 83 chr4 191964495 191964541 -10363806 - L1MC5 LINE L1 -81 7880 7832 2620 21 0 0 chr4 191968654 191968943 -10359404 - AluY SINE Alu -19 292 4 2044 153 71 5 chr4 191969232 191969612 -10358735 + L1MA6 LINE L1 5893 6297 -3 1044 89 15 0 chr4 191969644 191969779 -10358568 + AluSq/x SINE Alu 2 138 -175 2330 60 32 0 chr4 191969779 191970062 -10358285 + AluY SINE Alu 1 292 -19 335 295 126 14 chr4 191970834 191971112 -10357235 + L1ME4a LINE L1 5801 6109 -12 1727 180 3 0 chr4 191971254 191971548 -10356799 + AluJb SINE Alu 1 295 -17 376 318 92 0 chr4 191971558 191971732 -10356615 + MIR SINE MIR 69 257 -5 2406 88 0 28 chr4 191971839 191972156 -10356191 + AluSg SINE Alu 1 308 -2 356 143 0 83 chr4 191972579 191972616 -10355731 - L1MC5 LINE L1 -53 7908 7880 2467 148 11 8 chr4 191972616 191972980 -10355367 - MLT1A1 LTR MaLR 0 365 1 356 143 0 83 chr4 191972980 191973026 -10355321 - L1MC5 LINE L1 -81 7880 7832 254 359 31 23 chr4 191977378 191977506 -10350841 + MIR3 SINE MIR 14 142 -66 283 207 18 144 chr4 191978443 191978554 -10349793 + L2 LINE L2 3176 3272 0 2089 87 0 0 chr4 191979131 191979397 -10348950 + AluY SINE Alu 35 300 -11 1615 193 55 23 chr4 191979426 191979774 -10348573 + MLT1A1 LTR MaLR 7 365 0 210 283 7 83 chr4 191979775 191979886 -10348461 - MIR SINE MIR -65 143 30 22 35 0 0 chr4 191980549 191980578 -10347769 + AT_rich Low_complexity Low_complexity 1 29 0 317 323 108 79 chr4 191981063 191981469 -10346878 - L3b LINE CR1 -10 1573 1156 244 287 168 0 chr4 191981824 191981967 -10346380 - LTR33A LTR ERVL -14 509 343 * 329 279 144 14 chr4 191981964 191982186 -10346161 - LTR50 LTR ERVL -143 652 402 519 239 110 25 chr4 191982270 191982441 -10345906 - LTR50 LTR ERVL -365 158 1 1720 139 23 4 chr4 191982606 191982864 -10345483 + AluSx SINE Alu 5 267 -45 234 91 0 0 chr4 191982872 191982905 -10345442 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1634 182 20 17 chr4 191982910 191983206 -10345141 + AluJo SINE Alu 1 297 -15 1297 181 91 8 chr4 191984330 191984584 -10343763 - ORSL DNA AcHobo 0 275 1 2288 99 0 7 chr4 191984787 191985090 -10343257 - AluSg SINE Alu -9 301 1 311 253 129 47 chr4 191985446 191985560 -10342787 + L1M4c LINE L1 989 1123 -5261 4931 127 8 58 chr4 191985560 191986420 -10341927 + L1MA4 LINE L1 5483 6299 -1 311 253 129 47 chr4 191986420 191986475 -10341872 + L1M4c LINE L1 1123 1172 -5212 1093 165 0 6 chr4 191986511 191986693 -10341654 + AluJb SINE Alu 120 300 -12 1400 198 75 132 chr4 191986693 191987475 -10340872 + L1MC5 LINE L1 6789 7526 -435 333 256 98 79 chr4 191987565 191987768 -10340579 + L1ME3A LINE L1 5956 6162 -8 200 265 265 0 chr4 191988111 191988194 -10340153 - L2 LINE L2 -4 3309 3205 504 296 5 59 chr4 191988271 191988491 -10339856 - MIR SINE MIR -10 252 45 6048 145 15 8 chr4 191988507 191989500 -10338847 + L1MA4 LINE L1 5277 6276 -24 2054 126 7 10 chr4 191989501 191989802 -10338545 - AluSx SINE Alu -12 300 1 33 0 0 0 chr4 191989827 191989860 -10338487 + AT_rich Low_complexity Low_complexity 1 33 0 1351 259 14 32 chr4 191989956 191990303 -10338044 + MER58B DNA MER1_type 1 341 0 778 188 0 15 chr4 191990858 191990991 -10337356 + AluJ SINE Alu 1 131 -171 307 322 0 0 chr4 191991022 191991112 -10337235 - L1MC4 LINE L1 -1339 6703 6614 350 261 23 0 chr4 191991130 191991218 -10337129 - L1MC4 LINE L1 -1339 6703 6614 320 255 0 43 chr4 191991228 191991322 -10337025 - L1MC4 LINE L1 -1339 6703 6614 366 214 22 22 chr4 191991326 191991415 -10336932 - L1MC4 LINE L1 -1339 6703 6615 1084 137 0 6 chr4 191991430 191991591 -10336756 + AluJ SINE Alu 130 289 -23 1140 124 0 0 chr4 191991591 191991612 -10336735 + (GGAA)n Simple_repeat Simple_repeat 1 21 -211 276 30 0 0 chr4 191991612 191991645 -10336702 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 1140 124 0 0 chr4 191991645 191991823 -10336524 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 2150 139 8 43 chr4 191992063 191992459 -10335888 + L1MA7 LINE L1 5906 6287 -4 731 265 39 30 chr4 191993220 191993454 -10334893 + MIR SINE MIR 17 252 -10 520 252 16 8 chr4 191994640 191994767 -10333580 + MER63A DNA MER1_type 83 210 0 2298 98 3 7 chr4 191995043 191995350 -10332997 - AluSx SINE Alu -4 308 3 304 239 23 131 chr4 191995425 191995489 -10332858 - MER5A DNA MER1_type 0 189 120 1524 195 0 4 chr4 191995489 191995761 -10332586 + AluJb SINE Alu 21 291 -21 304 239 23 131 chr4 191995761 191995872 -10332475 - MER5A DNA MER1_type -69 120 33 1161 241 37 62 chr4 191995955 191996318 -10332029 - MER77 LTR ERV1 -7 598 256 668 244 19 13 chr4 191996372 191996528 -10331819 + L1PB4 LINE L1 5996 6152 -4 1900 142 16 10 chr4 191996720 191997029 -10331318 + AluJb SINE Alu 2 312 0 2510 162 95 5 chr4 191997631 191997687 -10330660 - MER70A LTR ERVL 0 472 422 344 22 0 22 chr4 191997687 191997733 -10330614 + (CA)n Simple_repeat Simple_repeat 2 46 0 2510 162 95 5 chr4 191997733 191998108 -10330239 - MER70A LTR ERVL -50 422 2 222 389 48 8 chr4 191999040 191999166 -10329181 - L2 LINE L2 0 3272 3142 264 170 52 39 chr4 191999684 191999837 -10328510 + (TA)n Simple_repeat Simple_repeat 2 156 0 259 215 52 29 chr4 191999751 191999923 -10328424 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 * 537 208 87 40 chr4 192000392 192000541 -10327806 + MER58B DNA MER1_type 1 156 -185 1024 85 0 0 chr4 192000542 192000671 -10327676 + AluSg/x SINE Alu 171 299 -13 564 200 127 27 chr4 192000671 192000821 -10327526 + MER58B DNA MER1_type 146 310 -31 1697 179 0 3 chr4 192000869 192001166 -10327181 - AluJb SINE Alu -16 296 1 187 265 73 0 chr4 192001205 192001273 -10327074 + L3b LINE CR1 1191 1263 -320 234 91 0 0 chr4 192001722 192001755 -10326592 + (T)n Simple_repeat Simple_repeat 1 33 0 844 187 12 29 chr4 192002539 192002710 -10325637 + FRAM SINE Alu 1 160 -16 211 273 13 26 chr4 192004229 192004306 -10324041 + GA-rich Low_complexity Low_complexity 1 76 0 2011 144 3 3 chr4 192005441 192005739 -10322608 + AluSx SINE Alu 1 298 -14 221 385 48 0 chr4 192005801 192005905 -10322442 - L2 LINE L2 -8 3264 3156 183 283 0 0 chr4 192005948 192005994 -10322353 - L2 LINE L2 -2 3270 3225 333 263 25 0 chr4 192006340 192006420 -10321927 - MIR3 SINE MIR -48 160 79 4753 231 46 79 chr4 192006442 192006888 -10321459 - L1MC1 LINE L1 -13 6600 6141 2353 96 58 28 chr4 192006888 192007252 -10321095 + THE1C LTR MaLR 1 375 0 4753 231 46 79 chr4 192007252 192008982 -10319365 - L1MC1 LINE L1 -472 6141 4314 772 171 0 36 chr4 192008982 192009122 -10319225 - FLAM_C SINE Alu -3 140 6 4753 231 46 79 chr4 192009122 192009454 -10318893 - L1MC1 LINE L1 -2299 4314 3973 4175 176 25 20 chr4 192009452 192010238 -10318109 - L1MC1 LINE L1 -5611 815 26 * 1633 201 17 0 chr4 192010255 192010544 -10317803 - AluJo SINE Alu -18 294 1 249 211 0 0 chr4 192010608 192010665 -10317682 + (CA)n Simple_repeat Simple_repeat 1 57 0 1603 156 16 0 chr4 192010714 192010971 -10317376 + Tigger3(Golem) DNA MER2_type 2768 3028 -1 228 68 34 119 chr4 192010984 192011043 -10317304 + L1MC4 LINE L1 6655 6708 -1334 1355 296 43 39 chr4 192011062 192011530 -10316817 - L2 LINE L2 -141 3172 2710 2205 113 3 0 chr4 192011530 192011840 -10316507 - AluSx SINE Alu -1 311 1 1355 296 43 39 chr4 192011840 192012036 -10316311 - L2 LINE L2 -603 2710 2516 14581 134 28 9 chr4 192012051 192013689 -10314658 - Tigger1 DNA MER2_type -35 2383 688 213 39 0 0 chr4 192013689 192013715 -10314632 + (TTG)n Simple_repeat Simple_repeat 2 27 0 14581 134 28 9 chr4 192013715 192014398 -10313949 - Tigger1 DNA MER2_type -1730 688 19 1520 251 75 35 chr4 192014402 192014571 -10313776 - L2 LINE L2 -803 2511 2350 2147 117 0 0 chr4 192014571 192014894 -10313453 - AluSx SINE Alu 0 323 1 1520 251 75 35 chr4 192014894 192015272 -10313075 - L2 LINE L2 -964 2350 1941 1027 202 61 9 chr4 192015276 192015489 -10312858 + Tigger7 DNA MER2_type 7 230 -503 282 197 0 15 chr4 192015484 192015550 -10312797 + Tigger7 DNA MER2_type 166 230 -475 * 290 191 0 48 chr4 192015527 192015611 -10312736 + Tigger7 DNA MER2_type 150 229 -321 303 155 0 17 chr4 192015614 192015672 -10312675 + Tigger7 DNA MER2_type 174 230 -2257 282 197 0 15 chr4 192015667 192015733 -10312614 + Tigger7 DNA MER2_type 166 230 -503 * 1159 188 60 5 chr4 192015728 192015946 -10312401 + Tigger7 DNA MER2_type 166 395 -2092 424 241 11 0 chr4 192015944 192016031 -10312316 + Tigger7 DNA MER2_type 2398 2485 -6 * 881 239 74 57 chr4 192016038 192016225 -10312122 - L2 LINE L2 -1364 1950 1753 221 83 28 0 chr4 192016225 192016261 -10312086 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 881 239 74 57 chr4 192016261 192016424 -10311923 - L2 LINE L2 -1561 1753 1594 836 173 8 0 chr4 192018878 192019011 -10309336 - FLAM_C SINE Alu 0 143 10 203 301 0 12 chr4 192020418 192020501 -10307846 + (CATATA)n Simple_repeat Simple_repeat 2 83 0 2141 89 3 43 chr4 192022740 192023042 -10305305 + AluSg SINE Alu 1 290 -20 423 272 172 0 chr4 192023371 192023540 -10304807 + MIR SINE MIR 28 225 -37 356 375 0 16 chr4 192024421 192024613 -10303734 - MER5A DNA MER1_type 0 189 1 2376 98 0 0 chr4 192025468 192025775 -10302572 + AluSc SINE Alu 1 307 -2 375 307 47 0 chr4 192029580 192029707 -10298640 - L2 LINE L2 0 3272 3140 228 86 0 0 chr4 192034735 192034770 -10293577 + (CA)n Simple_repeat Simple_repeat 1 35 0 215 167 0 24 chr4 192035225 192035267 -10293080 - MIR SINE MIR -187 75 35 5977 98 21 30 chr4 192035617 192036513 -10291834 - L1MA3 LINE L1 -11 6294 5407 1296 219 53 44 chr4 192036616 192037186 -10291161 + L1M4c LINE L1 1974 2562 -3820 239 162 0 0 chr4 192037232 192037269 -10291078 - Alu SINE Alu -265 37 1 1314 128 36 9 chr4 192037269 192037488 -10290859 - AluSg/x SINE Alu -1 311 87 731 306 35 29 chr4 192037493 192037836 -10290511 + L1M4c LINE L1 2584 2928 -3454 10683 60 97 5 chr4 192037937 192039385 -10288962 - L1P LINE L1 -4469 1677 97 10521 44 2 0 chr4 192039485 192040792 -10287555 - L1P LINE L1 -3372 2774 1465 425 20 0 0 chr4 192040892 192040975 -10287372 + L1PA4 LINE L1 6088 6170 0 862 224 22 0 chr4 192040975 192041154 -10287193 + Tigger2 DNA MER2_type 2536 2718 0 270 283 0 0 chr4 192041456 192041516 -10286831 - MIR SINE MIR -202 60 1 1609 106 13 0 chr4 192043947 192044174 -10284173 + MER30 DNA MER1_type 1 230 0 205 125 0 0 chr4 192045960 192045992 -10282355 - L2 LINE L2 -2 3270 3239 2407 90 0 3 chr4 192046776 192047088 -10281259 + AluSq SINE Alu 1 311 -2 275 239 23 0 chr4 192049036 192049124 -10279223 + L1MC4 LINE L1 6614 6703 -1339 * 292 267 0 0 chr4 192049118 192049208 -10279139 + L1MC4 LINE L1 6614 6703 -1339 576 200 19 0 chr4 192049305 192049410 -10278937 - FLAM_A SINE Alu -35 107 1 207 338 14 0 chr4 192049524 192049598 -10278749 - L2 LINE L2 -19 3294 3220 1071 200 39 108 chr4 192049791 192050181 -10278166 - MLT1A1 LTR MaLR -2 363 1 220 385 30 20 chr4 192050247 192050546 -10277801 + L2 LINE L2 2424 2725 -589 185 308 15 0 chr4 192050866 192050931 -10277416 - MIR3 SINE MIR -24 184 119 216 382 53 29 chr4 192051047 192051254 -10277093 + L2 LINE L2 2077 2288 -1026 280 239 29 72 chr4 192051254 192051392 -10276955 + MER94 DNA DNA 2 133 -1 579 305 84 38 chr4 192051403 192051829 -10276518 + L2 LINE L2 2295 2740 -574 340 307 39 16 chr4 192051874 192052001 -10276346 + L2 LINE L2 3182 3311 -2 185 349 9 57 chr4 192052157 192052187 -10276160 + L2 LINE L2 2959 2989 -283 475 278 65 12 chr4 192052187 192052356 -10275991 + MER5B DNA MER1_type 1 178 0 185 349 9 57 chr4 192052356 192052431 -10275916 + L2 LINE L2 2989 3059 -213 2190 88 7 10 chr4 192053011 192053307 -10275040 - AluY SINE Alu -16 295 1 1086 127 0 0 chr4 192053849 192054006 -10274341 - AluSg/x SINE Alu 0 312 156 25 31 0 0 chr4 192054782 192054814 -10273533 + AT_rich Low_complexity Low_complexity 1 32 0 1699 137 10 48 chr4 192054820 192055137 -10273210 + AluJb SINE Alu 1 306 0 1997 161 0 0 chr4 192055359 192055664 -10272683 - AluJb SINE Alu -7 305 1 23 0 0 0 chr4 192056283 192056306 -10272041 + GC_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr4 192057674 192057726 -10270621 + AT_rich Low_complexity Low_complexity 1 52 0 207 0 0 0 chr4 192059540 192059563 -10268784 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 214 229 0 29 chr4 192060475 192060545 -10267802 + (TA)n Simple_repeat Simple_repeat 2 69 0 22 70 0 0 chr4 192061478 192061521 -10266826 + AT_rich Low_complexity Low_complexity 1 43 0 207 204 0 0 chr4 192061716 192061760 -10266587 + GA-rich Low_complexity Low_complexity 3 46 0 30 45 0 0 chr4 192063860 192063904 -10264443 + AT_rich Low_complexity Low_complexity 1 44 0 32 0 0 0 chr4 192064380 192064412 -10263935 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 192065663 192065684 -10262663 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4 192067674 192067694 -10260653 + (T)n Simple_repeat Simple_repeat 1 20 0 1044 150 56 0 chr4 192068021 192068201 -10260146 - L1PA16 LINE L1 -9 6157 5968 282 315 19 0 chr4 192069060 192069168 -10259179 + L2 LINE L2 3162 3271 -1 1109 250 93 76 chr4 192069553 192070037 -10258310 - Charlie8 DNA MER1_type -1925 492 1 258 258 45 11 chr4 192070670 192070759 -10257588 + MIR SINE MIR 54 145 -117 276 30 0 0 chr4 192071202 192071235 -10257112 + (CA)n Simple_repeat Simple_repeat 1 33 0 777 153 0 0 chr4 192073595 192073719 -10254628 - FRAM SINE Alu -13 163 40 318 26 0 0 chr4 192076633 192076672 -10251675 + (CA)n Simple_repeat Simple_repeat 1 39 0 189 0 0 0 chr4 192077445 192077466 -10250881 + (TA)n Simple_repeat Simple_repeat 2 22 0 751 300 67 0 chr4 192078375 192078615 -10249732 + MIR SINE MIR 7 262 0 1786 112 45 70 chr4 192078792 192079104 -10249243 - AluSx SINE Alu -6 306 3 27 0 0 0 chr4 192079732 192079759 -10248588 + AT_rich Low_complexity Low_complexity 1 27 0 864 158 0 0 chr4 192079831 192079958 -10248389 - AluJb SINE Alu -185 127 1 204 111 0 0 chr4 192080075 192080111 -10248236 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 921 128 0 0 chr4 192082773 192082906 -10245441 - FLAM_C SINE Alu 0 133 1 34 42 0 0 chr4 192083024 192083072 -10245275 + AT_rich Low_complexity Low_complexity 1 48 0 227 160 60 0 chr4 192083093 192083143 -10245204 - U2 snRNA snRNA -135 53 1 183 139 0 0 chr4 192084024 192084060 -10244287 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 367 319 150 24 chr4 192084745 192084952 -10243395 + MIR SINE MIR 5 237 -25 180 0 0 0 chr4 192086624 192086644 -10241703 + (T)n Simple_repeat Simple_repeat 1 20 0 2083 111 21 0 chr4 192086935 192087223 -10241124 + AluSq SINE Alu 1 294 -19 24 53 0 0 chr4 192088475 192088513 -10239834 + AT_rich Low_complexity Low_complexity 1 38 0 468 0 0 0 chr4 192088893 192088945 -10239402 + (TA)n Simple_repeat Simple_repeat 2 53 0 409 237 79 18 chr4 192090343 192090457 -10237890 + MIR3 SINE MIR 34 154 -54 23 54 0 0 chr4 192091095 192091132 -10237215 + AT_rich Low_complexity Low_complexity 1 37 0 35 63 0 0 chr4 192091186 192091249 -10237098 + AT_rich Low_complexity Low_complexity 1 63 0 237 179 0 0 chr4 192093075 192093114 -10235233 - L2 LINE L2 -18 3295 3257 21 0 0 0 chr4 192093213 192093234 -10235113 + AT_rich Low_complexity Low_complexity 1 21 0 1197 199 67 70 chr4 192094097 192094428 -10233919 + MER58B DNA MER1_type 8 337 -4 333 0 0 0 chr4 192097154 192097191 -10231156 + (CA)n Simple_repeat Simple_repeat 1 37 0 1698 160 0 11 chr4 192097499 192097780 -10230567 + AluJo SINE Alu 21 298 -14 2277 108 0 0 chr4 192099949 192100255 -10228092 + AluSx SINE Alu 5 310 -2 1727 93 163 8 chr4 192101304 192101562 -10226785 + AluSg SINE Alu 1 298 -2 2042 132 10 6 chr4 192101843 192102154 -10226193 - AluJb SINE Alu 0 312 1 2395 94 0 0 chr4 192102956 192103255 -10225092 - AluSx SINE Alu -13 299 1 2161 91 4 0 chr4 192104430 192104704 -10223643 - AluSp SINE Alu -7 306 32 1329 186 171 18 chr4 192105987 192106315 -10222032 - MER58D DNA MER1_type 0 386 9 2276 102 3 0 chr4 192106568 192106873 -10221474 - AluSq SINE Alu -7 306 1 211 200 43 0 chr4 192108051 192108121 -10220226 + (TTATA)n Simple_repeat Simple_repeat 1 73 0 23 0 0 0 chr4 192109354 192109377 -10218970 + AT_rich Low_complexity Low_complexity 1 23 0 433 316 40 6 chr4 192109419 192109596 -10218751 + MIR SINE MIR 74 256 -6 21 0 0 0 chr4 192110117 192110138 -10218209 + AT_rich Low_complexity Low_complexity 1 21 0 2408 64 3 6 chr4 192111389 192111701 -10216646 - AluY SINE Alu 0 311 1 731 168 0 8 chr4 192112103 192112268 -10216079 - FLAM_C SINE Alu 0 165 2 21 0 0 0 chr4 192112268 192112289 -10216058 + AT_rich Low_complexity Low_complexity 1 21 0 2373 100 7 0 chr4 192114610 192114919 -10213428 - AluSx SINE Alu -1 311 1 1097 247 21 4 chr4 192115096 192115339 -10213008 - MIR SINE MIR 0 262 16 302 332 278 5 chr4 192115607 192115812 -10212535 - MIR SINE MIR 0 262 2 394 304 83 6 chr4 192115999 192116167 -10212180 - MIR SINE MIR -13 249 69 362 208 13 0 chr4 192116214 192116291 -10212056 - MER116 DNA Mariner 0 80 3 2206 99 10 0 chr4 192116541 192116844 -10211503 + AluSx SINE Alu 1 306 -6 1554 173 7 11 chr4 192117007 192117291 -10211056 + AluJo SINE Alu 30 312 0 2501 80 0 0 chr4 192117693 192118005 -10210342 + AluSx SINE Alu 1 312 0 2297 102 0 9 chr4 192118735 192119050 -10209297 + AluSx SINE Alu 1 312 0 201 100 0 50 chr4 192121730 192121770 -10206577 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 297 252 61 43 chr4 192122191 192122306 -10206041 - MIR SINE MIR -44 218 102 189 0 0 0 chr4 192122432 192122453 -10205894 + (A)n Simple_repeat Simple_repeat 1 21 0 345 312 89 32 chr4 192123343 192123389 -10204958 + MIR SINE MIR 2 44 -218 2215 95 10 3 chr4 192123389 192123684 -10204663 - AluSg SINE Alu -13 297 1 345 312 89 32 chr4 192123684 192123884 -10204463 + MIR SINE MIR 44 262 0 193 282 42 56 chr4 192125405 192125476 -10202871 - MIR3 SINE MIR -52 156 87 183 279 0 66 chr4 192126564 192126625 -10201722 + MIR SINE MIR 87 143 -65 1321 229 44 22 chr4 192126640 192127002 -10201345 + L1MA9 LINE L1 5905 6274 -38 300 301 0 21 chr4 192127009 192127102 -10201245 - L1MC4 LINE L1 -1338 6704 6614 227 170 0 0 chr4 192127112 192127159 -10201188 + LTR66 LTR ERVL 404 450 -160 242 156 0 0 chr4 192128350 192128395 -10199952 - LTR66 LTR ERVL -172 438 394 396 281 26 9 chr4 192129215 192129329 -10199018 - L2 LINE L2 -16 3297 3182 405 0 0 0 chr4 192129561 192129606 -10198741 + (TA)n Simple_repeat Simple_repeat 1 45 0 1724 95 115 0 chr4 192131199 192131452 -10196895 + AluSc SINE Alu 8 289 -20 1800 160 7 0 chr4 192182018 192182312 -10146035 + AluJo SINE Alu 1 296 -16 2203 126 0 0 chr4 192182734 192183036 -10145311 + AluSx SINE Alu 4 305 -7 305 338 63 15 chr4 192183590 192183839 -10144508 - MIR SINE MIR -6 256 1 2129 116 0 3 chr4 192184020 192184304 -10144043 + AluSq SINE Alu 1 283 -30 27 0 0 0 chr4 192187729 192187756 -10140591 + AT_rich Low_complexity Low_complexity 1 27 0 719 199 54 38 chr4 192187904 192188090 -10140257 - MER5A DNA MER1_type 0 189 1 409 297 97 26 chr4 192188536 192188691 -10139656 - MIR SINE MIR -18 190 25 250 235 30 30 chr4 192188845 192188977 -10139370 + (TA)n Simple_repeat Simple_repeat 1 132 0 1766 164 10 3 chr4 192190150 192190442 -10137905 - AluJo SINE Alu -18 294 1 4018 161 37 7 chr4 192190454 192191211 -10137136 - L1MA4 LINE L1 -3 6297 5518 2292 100 0 3 chr4 192191707 192192008 -10136339 - AluSc SINE Alu -9 300 1 212 297 0 16 chr4 192192032 192192096 -10136251 - L2 LINE L2 0 3313 3251 250 305 141 50 chr4 192192113 192192552 -10135795 + MARNA DNA Mariner 14 492 -94 4372 76 7 23 chr4 192193109 192193551 -10134796 + MER41A LTR ERV1 1 434 -120 2137 43 31 0 chr4 192193551 192193807 -10134540 - AluY SINE Alu -7 304 41 4372 76 7 23 chr4 192193807 192193927 -10134420 + MER41A LTR ERV1 434 554 0 3703 149 153 15 chr4 192194027 192194771 -10133576 + MER41A-int LTR ERV1 5 851 -5095 * 13240 154 90 32 chr4 192194766 192197492 -10130855 + MER41A-int LTR ERV1 1052 4919 -2529 12597 103 28 15 chr4 192197476 192199305 -10129042 + MER41A-int LTR ERV1 4092 5945 -1 * 4222 106 13 2 chr4 192199306 192199854 -10128493 + MER41A LTR ERV1 1 554 0 182 348 0 22 chr4 192200484 192200530 -10127817 - L3b LINE CR1 -22 1561 1517 5297 150 19 27 chr4 192200567 192201478 -10126869 - MER4D LTR ERV1 0 903 1 227 261 46 0 chr4 192202549 192202614 -10125733 - MIR SINE MIR -75 187 120 388 304 40 30 chr4 192203529 192203730 -10124617 - L2 LINE L2 -61 3252 3050 346 293 215 24 chr4 192203982 192204187 -10124160 - MIR SINE MIR -3 259 16 1983 140 0 3 chr4 192205671 192205957 -10122390 - AluSx SINE Alu -26 286 2 180 306 56 28 chr4 192206163 192206235 -10122112 + L2 LINE L2 3156 3229 -43 469 327 59 88 chr4 192206292 192206487 -10121860 - L2 LINE L2 -3 3310 3111 1652 166 7 30 chr4 192206487 192206782 -10121565 + AluJo SINE Alu 1 288 -24 469 327 59 88 chr4 192206782 192207042 -10121305 - L2 LINE L2 -202 3111 2868 2422 96 0 0 chr4 192208917 192209230 -10119117 + AluSp SINE Alu 1 313 0 354 223 96 0 chr4 192209236 192209330 -10119017 + MIR SINE MIR 75 177 -85 195 186 0 0 chr4 192210093 192210136 -10118211 + (TA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr4 192210404 192210425 -10117922 + AT_rich Low_complexity Low_complexity 1 21 0 777 194 0 8 chr4 192212362 192212486 -10115861 - FLAM_A SINE Alu -10 123 1 203 0 0 36 chr4 192212559 192212587 -10115760 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1860 151 7 0 chr4 192212589 192212868 -10115479 - AluSx SINE Alu -31 281 1 2247 60 42 3 chr4 192214072 192214355 -10113992 + AluY SINE Alu 1 294 -17 196 296 46 74 chr4 192214355 192214463 -10113884 + L2 LINE L2 3168 3272 0 6973 235 68 30 chr4 192214567 192216487 -10111860 - L1MEc LINE L1 -3974 2422 469 949 191 81 34 chr4 192216487 192216696 -10111651 + MER20 DNA MER1_type 1 219 0 6973 235 68 30 chr4 192216696 192217146 -10111201 - L1MEc LINE L1 -5927 469 38 1456 171 30 63 chr4 192217353 192217652 -10110695 - AluJb SINE Alu -23 289 1 26 74 0 0 chr4 192217757 192217811 -10110536 + AT_rich Low_complexity Low_complexity 1 54 0 2002 158 0 0 chr4 192218808 192219112 -10109235 - AluJo SINE Alu -8 304 1 2115 119 0 3 chr4 192219875 192220169 -10108178 + AluSx SINE Alu 1 293 -19 433 171 0 13 chr4 192220202 192220275 -10108072 - MER58 DNA MER1_type 0 2420 2349 1630 207 40 65 chr4 192220275 192220749 -10107598 - MLT1C LTR MaLR 0 467 6 699 238 41 0 chr4 192220750 192220897 -10107450 - MER58A DNA MER1_type 0 161 9 409 213 111 19 chr4 192221260 192221368 -10106979 + L2 LINE L2 3180 3297 -16 2161 113 0 0 chr4 192221388 192221700 -10106647 + AluSx SINE Alu 1 312 0 2157 124 0 0 chr4 192221708 192222015 -10106332 + AluY SINE Alu 1 307 -4 233 0 62 0 chr4 192222754 192222786 -10105561 + (CAGAGA)n Simple_repeat Simple_repeat 1 34 0 24 0 0 0 chr4 192223458 192223482 -10104865 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr4 192225196 192225233 -10103114 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr4 192225786 192225812 -10102535 + AT_rich Low_complexity Low_complexity 1 26 0 1595 174 10 34 chr4 192226594 192226887 -10101460 - AluJo SINE Alu -16 286 1 2384 98 0 0 chr4 192228254 192228560 -10099787 - AluSx SINE Alu -6 306 1 681 302 50 68 chr4 192232621 192232823 -10095524 + L2 LINE L2 2590 2794 -519 1785 181 3 3 chr4 192232823 192233126 -10095221 + AluJo SINE Alu 1 303 -9 681 302 50 68 chr4 192233126 192233475 -10094872 + L2 LINE L2 2794 3126 -187 2222 97 0 13 chr4 192233482 192233793 -10094554 - AluY SINE Alu -3 308 2 2382 87 6 0 chr4 192233802 192234113 -10094234 - AluSp SINE Alu 0 313 1 749 175 56 0 chr4 192234114 192234240 -10094107 - AluJo SINE Alu -178 134 2 488 286 85 21 chr4 192234254 192234443 -10093904 + L2 LINE L2 3113 3313 0 269 333 54 27 chr4 192234512 192234659 -10093688 - MIR SINE MIR -101 161 11 1715 161 7 17 chr4 192234821 192235113 -10093234 + AluJo SINE Alu 1 289 -23 1779 48 0 0 chr4 192236519 192236728 -10091619 + AluY SINE Alu 97 305 -6 243 264 96 16 chr4 192237006 192237131 -10091216 + L1M LINE L1 5256 5390 -790 3167 195 118 13 chr4 192238329 192239329 -10089018 + L1ME2 LINE L1 5057 6164 0 235 313 64 52 chr4 192240894 192241118 -10087229 + HAL1b LINE L1 305 521 -827 1243 238 68 41 chr4 192241120 192241602 -10086745 - MER39 LTR ERV1 0 707 1 228 209 0 30 chr4 192241991 192242058 -10086289 + A-rich Low_complexity Low_complexity 5 69 0 2390 81 0 3 chr4 192242245 192242554 -10085793 + AluSx SINE Alu 1 308 -4 746 310 57 70 chr4 192242913 192243719 -10084628 + L1MB8 LINE L1 3519 4314 -1832 544 224 95 125 chr4 192243735 192243967 -10084380 + MIR SINE MIR 5 229 -33 576 253 80 81 chr4 192243998 192244687 -10083660 + L1MB8 LINE L1 4370 5057 -1089 255 254 164 15 chr4 192244730 192244864 -10083483 - MLT1L LTR MaLR -54 561 408 1971 138 3 3 chr4 192245791 192246089 -10082258 + AluSx SINE Alu 1 298 -14 504 284 50 56 chr4 192246150 192246453 -10081894 + L1 LINE L1 2255 2555 -3591 24 67 0 0 chr4 192248997 192249042 -10079305 + AT_rich Low_complexity Low_complexity 1 45 0 348 281 80 38 chr4 192249185 192249448 -10078899 - L1MC4a LINE L1 -1868 5940 5667 3333 170 43 19 chr4 192249750 192250425 -10077922 + L1MB8 LINE L1 5482 6172 -6 225 0 0 0 chr4 192251394 192251419 -10076928 + (CAGCC)n Simple_repeat Simple_repeat 2 26 0 432 55 0 0 chr4 192253827 192253882 -10074465 + (CATA)n Simple_repeat Simple_repeat 4 58 0 222 292 0 15 chr4 192254780 192254845 -10073502 + CT-rich Low_complexity Low_complexity 3 66 0 30 27 0 0 chr4 192256478 192256515 -10071832 + AT_rich Low_complexity Low_complexity 1 37 0 2182 75 11 4 chr4 192258453 192258756 -10069591 - AluSc SINE Alu 0 305 1 545 257 25 70 chr4 192259500 192259741 -10068606 + MIR SINE MIR 33 262 0 2281 84 10 0 chr4 192261459 192261755 -10066592 + AluSq SINE Alu 1 299 -14 237 395 32 8 chr4 192262674 192262798 -10065549 - L2 LINE L2 -10 3262 3136 194 0 39 0 chr4 192263101 192263127 -10065220 + (TA)n Simple_repeat Simple_repeat 2 28 0 631 135 9 36 chr4 192263435 192263546 -10064801 + FLAM_A SINE Alu 17 124 -18 31 0 0 0 chr4 192263886 192263917 -10064430 + AT_rich Low_complexity Low_complexity 1 31 0 42344 34 2 2 chr4 192263917 192270073 -10058274 - L1PA3 LINE L1 0 6155 3 540 243 0 0 chr4 192270476 192270645 -10057702 + (TA)n Simple_repeat Simple_repeat 1 169 0 2498 58 0 10 chr4 192271607 192271918 -10056429 - AluY SINE Alu -3 308 1 929 265 83 18 chr4 192271993 192272438 -10055909 - L1ME LINE L1 -334 5787 5314 1761 166 71 0 chr4 192272929 192273254 -10055093 - MER7A DNA MER2_type 0 346 1 28 61 0 0 chr4 192273532 192273581 -10054766 + AT_rich Low_complexity Low_complexity 1 49 0 559 273 52 23 chr4 192276422 192276594 -10051753 - MIR SINE MIR -59 203 27 2087 134 13 3 chr4 192276798 192277105 -10051242 + AluSx SINE Alu 1 310 -2 339 366 0 8 chr4 192277113 192277236 -10051111 + MIR3 SINE MIR 11 132 -76 288 0 0 0 chr4 192278429 192278461 -10049886 + (CA)n Simple_repeat Simple_repeat 1 32 0 1737 151 20 37 chr4 192279938 192280236 -10048111 - AluJb SINE Alu -19 293 1 2368 164 34 5 chr4 192280504 192280918 -10047429 - MSTB LTR MaLR 0 426 1 189 343 47 87 chr4 192282064 192282364 -10045983 + L2 LINE L2 2817 3104 -168 2211 120 0 7 chr4 192282728 192283037 -10045310 - AluSx SINE Alu -5 307 1 345 286 0 9 chr4 192284191 192284296 -10044051 - MER94 DNA DNA -25 109 6 2158 113 0 0 chr4 192284495 192284807 -10043540 - AluSx SINE Alu 0 312 1 211 262 0 0 chr4 192285371 192285413 -10042934 - MIR SINE MIR -115 147 106 640 270 65 110 chr4 192285425 192286031 -10042316 - L2 LINE L2 -20 3293 2709 253 304 25 13 chr4 192286026 192286105 -10042242 - MIR SINE MIR -161 101 22 * 1922 84 81 11 chr4 192286289 192286562 -10041785 + AluSg SINE Alu 1 292 -18 433 325 36 12 chr4 192286904 192287070 -10041277 + MIR SINE MIR 8 177 -85 189 0 0 0 chr4 192287147 192287168 -10041179 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2348 80 0 13 chr4 192287184 192287497 -10040850 + AluSq SINE Alu 5 313 0 375 317 0 0 chr4 192287594 192287695 -10040652 + L2 LINE L2 3200 3300 -13 318 50 0 0 chr4 192288730 192288770 -10039577 + (TCCCC)n Simple_repeat Simple_repeat 3 42 0 2103 78 3 21 chr4 192288770 192289053 -10039294 - AluSp SINE Alu -35 278 1 1883 204 39 28 chr4 192290164 192290625 -10037722 - MER31B LTR ERV1 0 466 1 1037 193 4 25 chr4 192290659 192290898 -10037449 - L1PA16 LINE L1 -4 6162 5929 839 200 0 0 chr4 192290898 192291073 -10037274 + L1 LINE L1 4691 4865 -1281 2252 113 0 0 chr4 192292456 192292758 -10035589 - AluSx SINE Alu -10 302 1 21 36 0 0 chr4 192293055 192293083 -10035264 + AT_rich Low_complexity Low_complexity 1 28 0 4625 160 110 84 chr4 192293572 192295086 -10033261 + pTR5 LTR ERV1 743 2295 -143 21 36 0 0 chr4 192295545 192295573 -10032774 + AT_rich Low_complexity Low_complexity 1 28 0 228 365 35 29 chr4 192295580 192295750 -10032597 - MIR SINE MIR -12 250 80 2550 31 0 0 chr4 192296885 192297178 -10031169 - AluY SINE Alu -18 293 1 363 361 8 15 chr4 192298452 192298585 -10029762 - MIR3 SINE MIR -63 145 14 30 45 0 0 chr4 192302865 192302909 -10025438 + AT_rich Low_complexity Low_complexity 1 44 0 295 123 18 0 chr4 192303295 192303352 -10024995 - L1PA16 LINE L1 -21 6145 6088 447 267 213 10 chr4 192303509 192303711 -10024636 + MIR SINE MIR 20 262 0 2227 117 0 0 chr4 192303874 192304172 -10024175 + AluSx SINE Alu 1 298 -14 1398 88 0 0 chr4 192304443 192304624 -10023723 + AluSc SINE Alu 129 309 0 271 307 21 37 chr4 192304756 192304884 -10023463 - MIR SINE MIR -62 146 23 699 163 151 12 chr4 192304888 192305054 -10023293 - MER5A DNA MER1_type 0 189 1 216 111 0 0 chr4 192306106 192306142 -10022205 + (CAGTT)n Simple_repeat Simple_repeat 2 37 0 1584 171 49 11 chr4 192310930 192311216 -10017131 - AluJo SINE Alu -15 297 1 182 230 142 97 chr4 192311330 192311443 -10016904 + MIR SINE MIR 103 220 -42 366 314 20 0 chr4 192312756 192312858 -10015489 - L2 LINE L2 0 3272 3169 2128 127 10 0 chr4 192313220 192313527 -10014820 + AluSx SINE Alu 3 312 0 276 30 0 0 chr4 192314778 192314811 -10013536 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1748 161 16 22 chr4 192317010 192317321 -10011026 - AluJb SINE Alu -3 309 1 605 266 12 23 chr4 192318657 192318830 -10009517 - MER5A DNA MER1_type 0 189 19 32 0 0 0 chr4 192319613 192319645 -10008702 + AT_rich Low_complexity Low_complexity 1 32 0 2272 105 0 7 chr4 192319777 192320082 -10008265 + AluSc SINE Alu 1 303 -6 305 306 41 37 chr4 192320151 192320419 -10007928 + L1MEd LINE L1 939 1207 -4912 2064 133 3 3 chr4 192320528 192320821 -10007526 + AluSx SINE Alu 1 293 -19 245 219 31 0 chr4 192320899 192320963 -10007384 + HAL1 LINE L1 1544 1609 -898 183 364 30 0 chr4 192321047 192321113 -10007234 - L2 LINE L2 -90 3182 3115 183 184 0 0 chr4 192321994 192322032 -10006315 + (CA)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr4 192323174 192323195 -10005152 + AT_rich Low_complexity Low_complexity 1 21 0 2413 61 0 10 chr4 192324159 192324470 -10003877 - AluY SINE Alu -3 308 1 1671 173 3 7 chr4 192325751 192326057 -10002290 - AluJb SINE Alu -7 305 1 6591 47 2 0 chr4 192326414 192327217 -10001130 + L1PA5 LINE L1 5342 6146 -8 193 229 16 49 chr4 192327230 192327291 -10001056 - MIR SINE MIR -102 160 102 495 243 162 27 chr4 192329989 192330174 -9998173 - MIR SINE MIR -37 225 16 329 181 0 173 chr4 192330283 192330410 -9997937 - HAL1 LINE L1 -2336 171 67 2211 119 0 0 chr4 192332921 192333224 -9995123 + AluSg SINE Alu 1 303 -7 22 0 0 0 chr4 192335989 192336011 -9992336 + AT_rich Low_complexity Low_complexity 1 22 0 518 280 69 19 chr4 192337219 192337449 -9990898 - MIR SINE MIR -18 244 6 2162 117 0 0 chr4 192337657 192337957 -9990390 + AluY SINE Alu 1 300 -11 266 314 69 88 chr4 192338075 192338121 -9990226 - L2 LINE L2 -582 2732 2687 2134 110 4 0 chr4 192338121 192338457 -9989890 + AluSx SINE Alu 1 337 0 266 314 69 88 chr4 192338457 192338605 -9989742 - L2 LINE L2 -627 2687 2538 2260 93 7 0 chr4 192338605 192338905 -9989442 + AluSc SINE Alu 1 302 -7 266 314 69 88 chr4 192338905 192339129 -9989218 - L2 LINE L2 -776 2538 2320 2123 103 26 22 chr4 192339185 192339497 -9988850 + AluSq SINE Alu 1 313 0 282 270 123 43 chr4 192339965 192340128 -9988219 - L2 LINE L2 -210 3062 2887 918 98 16 0 chr4 192340255 192340377 -9987970 - AluSq/x SINE Alu -189 124 1 209 319 156 50 chr4 192340379 192341021 -9987326 - L2 LINE L2 -586 2728 2019 1558 192 10 10 chr4 192341229 192341520 -9986827 + AluJo SINE Alu 6 296 -16 1972 123 0 0 chr4 192341771 192342039 -9986308 + AluSq SINE Alu 1 268 -45 180 77 0 0 chr4 192342983 192343009 -9985338 + (CCTG)n Simple_repeat Simple_repeat 2 27 0 2338 81 0 32 chr4 192344126 192344435 -9983912 + AluSq SINE Alu 1 299 -14 1669 145 7 31 chr4 192344757 192344905 -9983442 + AluJb SINE Alu 1 4294967141 -467 2145 121 3 7 chr4 192344905 192345365 -9982982 + AluSx SINE Alu 1 459 0 301 314 59 0 chr4 192345456 192345558 -9982789 - MIR SINE MIR -68 140 33 274 253 11 35 chr4 192346877 192346964 -9981383 + MIR SINE MIR 167 251 -11 217 337 53 56 chr4 192347005 192347418 -9980929 + L2 LINE L2 1790 2201 -1113 2404 64 7 7 chr4 192347505 192347803 -9980544 - AluSg SINE Alu -12 298 1 681 330 22 38 chr4 192347981 192348218 -9980129 + L3b LINE CR1 1122 1354 -229 1098 78 7 0 chr4 192348218 192348359 -9979988 - L1PA14 LINE L1 0 6161 6020 681 330 22 38 chr4 192348359 192348439 -9979908 + L3b LINE CR1 1354 1434 -149 195 162 0 0 chr4 192348832 192348869 -9979478 + (TCCA)n Simple_repeat Simple_repeat 4 40 0 2074 104 0 84 chr4 192348882 192349217 -9979130 - AluSx SINE Alu -5 307 1 366 319 57 82 chr4 192349219 192349501 -9978846 - L2 LINE L2 -12 3260 2986 22 35 0 0 chr4 192349641 192349670 -9978677 + AT_rich Low_complexity Low_complexity 1 29 0 2343 94 0 3 chr4 192349975 192350283 -9978064 - AluY SINE Alu -4 307 1 2142 122 0 7 chr4 192350305 192350601 -9977746 - AluSx SINE Alu -18 294 1 484 253 35 36 chr4 192351018 192351199 -9977148 - MIR SINE MIR -59 149 14 488 342 80 32 chr4 192352159 192352472 -9975875 - L2 LINE L2 -49 3223 2896 415 323 56 26 chr4 192352505 192352700 -9975647 - MIR SINE MIR -14 248 48 223 238 0 0 chr4 192352941 192352983 -9975364 + polypyrimidine Low_complexity Low_complexity 6 47 0 30 0 0 0 chr4 192354608 192354638 -9973709 + AT_rich Low_complexity Low_complexity 1 30 0 2283 108 0 3 chr4 192354737 192355044 -9973303 - AluSx SINE Alu -1 311 6 2027 100 3 41 chr4 192355432 192355723 -9972624 - AluSp SINE Alu -13 300 21 237 322 113 9 chr4 192356510 192356625 -9971722 + MIR SINE MIR 101 227 -35 21 57 0 0 chr4 192357628 192357663 -9970684 + AT_rich Low_complexity Low_complexity 1 35 0 348 311 45 8 chr4 192357666 192357798 -9970549 + L2 LINE L2 3136 3272 0 2101 122 0 37 chr4 192358176 192358517 -9969830 + AluSx SINE Alu 4 332 0 202 240 40 0 chr4 192359104 192359154 -9969193 - L3 LINE CR1 -5 1572 1521 2096 113 17 10 chr4 192359413 192359714 -9968633 - AluSx SINE Alu -9 303 1 247 200 13 13 chr4 192359751 192359826 -9968521 + GA-rich Low_complexity Low_complexity 2 76 0 464 299 80 30 chr4 192363087 192363288 -9965059 + MIR SINE MIR 48 258 -4 2213 110 0 0 chr4 192363720 192364012 -9964335 - AluY SINE Alu -19 292 1 22 0 0 0 chr4 192364015 192364037 -9964310 + AT_rich Low_complexity Low_complexity 1 22 0 198 191 0 0 chr4 192364462 192364504 -9963843 + CT-rich Low_complexity Low_complexity 2 43 0 928 175 29 0 chr4 192365511 192365682 -9962665 - FRAM SINE Alu 0 176 1 349 284 88 20 chr4 192367434 192367582 -9960765 - MER91A DNA MER1_type -2 194 37 1774 132 13 85 chr4 192367649 192367967 -9960380 - AluJo SINE Alu -17 295 1 507 320 8 77 chr4 192369191 192369450 -9958897 - MIR SINE MIR -1 261 21 900 154 0 22 chr4 192369553 192369689 -9958658 - FLAM_A SINE Alu 0 133 1 642 275 169 22 chr4 192369691 192370004 -9958343 - MLT1K LTR MaLR -151 437 79 2320 95 0 10 chr4 192370032 192370338 -9958009 - AluSx SINE Alu -9 303 1 737 270 78 4 chr4 192370804 192371034 -9957313 + MIR SINE MIR 3 249 -13 197 299 178 29 chr4 192371358 192371532 -9956815 + MIR SINE MIR 50 249 -13 1008 184 0 6 chr4 192371539 192371718 -9956629 + AluJb SINE Alu 133 310 -2 207 220 60 0 chr4 192372823 192372873 -9955474 + (CATATA)n Simple_repeat Simple_repeat 5 57 0 272 326 82 11 chr4 192373047 192373231 -9955116 + L2 LINE L2 2385 2581 -733 263 175 79 0 chr4 192373446 192373509 -9954838 + LTR66 LTR ERVL 372 439 -171 297 0 0 0 chr4 192373511 192373544 -9954803 + (CA)n Simple_repeat Simple_repeat 2 34 0 822 164 16 0 chr4 192373563 192373685 -9954662 - AluJb SINE Alu -187 125 2 24 32 0 0 chr4 192375081 192375112 -9953235 + AT_rich Low_complexity Low_complexity 1 31 0 2086 96 0 51 chr4 192375460 192375772 -9952575 - AluSq SINE Alu -17 296 1 348 321 134 19 chr4 192375820 192376029 -9952318 + MIR SINE MIR 13 245 -17 22 0 0 0 chr4 192376272 192376294 -9952053 + AT_rich Low_complexity Low_complexity 1 22 0 860 181 0 0 chr4 192377293 192377426 -9950921 - FLAM_C SINE Alu 0 133 1 219 226 57 28 chr4 192379650 192379756 -9948591 + (CGGGG)n Simple_repeat Simple_repeat 3 111 0 180 0 0 0 chr4 192379950 192379970 -9948377 + (CGG)n Simple_repeat Simple_repeat 3 22 0 312 91 0 0 chr4 192380045 192380089 -9948258 + (CGG)n Simple_repeat Simple_repeat 3 46 0 21 0 0 0 chr4 192381904 192381925 -9946422 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 192382697 192382727 -9945620 + AT_rich Low_complexity Low_complexity 1 30 0 237 132 0 0 chr4 192383763 192383801 -9944546 + (TA)n Simple_repeat Simple_repeat 1 38 0 23 54 0 0 chr4 192384337 192384374 -9943973 + AT_rich Low_complexity Low_complexity 1 37 0 2413 78 3 3 chr4 192386299 192386606 -9941741 - AluSx SINE Alu -5 307 1 198 364 60 53 chr4 192386692 192386843 -9941504 + L2 LINE L2 3117 3268 -4 2306 103 0 6 chr4 192387645 192387956 -9940391 + AluSx SINE Alu 1 309 -3 436 263 51 19 chr4 192388091 192388247 -9940100 - MIR SINE MIR 0 262 102 1376 188 23 36 chr4 192388303 192388606 -9939741 - AluJo SINE Alu -13 299 1 263 256 103 0 chr4 192389212 192389290 -9939057 + MIR3 SINE MIR 75 160 -48 589 281 103 26 chr4 192389744 192390132 -9938215 + MARNA DNA Mariner 149 566 -20 23 0 0 0 chr4 192391082 192391105 -9937242 + AT_rich Low_complexity Low_complexity 1 23 0 474 214 80 18 chr4 192392143 192392255 -9936092 + L2 LINE L2 3195 3313 0 283 303 85 20 chr4 192392254 192392367 -9935980 - MIR SINE MIR -85 123 1 * 1592 152 52 21 chr4 192392505 192392795 -9935552 - AluJo SINE Alu -13 299 1 1829 114 4 0 chr4 192393086 192393340 -9935007 + AluSx SINE Alu 45 299 -13 633 206 97 24 chr4 192393366 192393531 -9934816 + MER8 DNA MER2_type 7 183 -56 2196 119 3 0 chr4 192393669 192393971 -9934376 + AluSx SINE Alu 1 303 -9 1832 177 57 15 chr4 192395528 192395861 -9932486 - MER7A DNA MER2_type 0 346 2 225 0 0 0 chr4 192395862 192395887 -9932460 + (TG)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr4 192395922 192395950 -9932397 + AT_rich Low_complexity Low_complexity 1 28 0 766 193 28 0 chr4 192396784 192396960 -9931387 - Charlie2 DNA MER1_type -1 2861 2681 1200 170 13 35 chr4 192396962 192397192 -9931155 - AluJo SINE Alu -21 291 67 974 104 78 7 chr4 192397720 192397874 -9930473 - AluSg/x SINE Alu -14 296 132 2314 78 7 0 chr4 192397874 192398168 -9930179 - AluSp SINE Alu -17 296 1 2260 92 0 0 chr4 192398511 192398803 -9929544 - AluSx SINE Alu -20 292 1 1277 206 47 21 chr4 192399473 192399812 -9928535 + MLT1A1 LTR MaLR 5 352 -13 228 222 0 37 chr4 192399915 192399969 -9928378 - L2 LINE L2 -4 3268 3217 700 254 99 20 chr4 192400419 192400671 -9927676 - MLT1C LTR MaLR -7 460 189 1300 122 5 15 chr4 192400672 192400868 -9927479 - AluJo SINE Alu -106 206 13 528 208 137 0 chr4 192400883 192401051 -9927296 - MLT1C LTR MaLR -276 191 1 665 147 9 0 chr4 192402353 192402469 -9925878 + FLAM_C SINE Alu 1 117 -16 2288 61 0 0 chr4 192402731 192403010 -9925337 + AluY SINE Alu 1 279 -32 192 40 0 0 chr4 192403010 192403035 -9925312 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 1514 134 103 0 chr4 192403042 192403303 -9925044 + AluJo SINE Alu 1 288 -24 282 131 0 33 chr4 192403304 192403365 -9924982 - Charlie2 DNA MER1_type -572 2290 2232 356 287 50 0 chr4 192403486 192403587 -9924760 - Charlie2 DNA MER1_type -2676 106 1 231 310 147 49 chr4 192403737 192403921 -9924426 - MER20 DNA MER1_type -17 202 1 315 310 80 31 chr4 192403995 192404221 -9924126 - L1M4 LINE L1 -3644 2502 2266 27 29 0 0 chr4 192404616 192404650 -9923697 + AT_rich Low_complexity Low_complexity 1 34 0 260 246 14 0 chr4 192405873 192405942 -9922405 + (TA)n Simple_repeat Simple_repeat 2 71 0 25 51 0 0 chr4 192407111 192407150 -9921197 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr4 192407468 192407490 -9920857 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 192407951 192407979 -9920368 + AT_rich Low_complexity Low_complexity 1 28 0 33 0 0 0 chr4 192408689 192408722 -9919625 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr4 192408735 192408756 -9919591 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 192409908 192409929 -9918418 + AT_rich Low_complexity Low_complexity 1 21 0 1841 135 3 7 chr4 192410851 192411139 -9917208 + AluSx SINE Alu 1 287 -25 183 42 0 0 chr4 192411152 192411176 -9917171 + (CAATA)n Simple_repeat Simple_repeat 1 24 0 1833 152 141 24 chr4 192412982 192413364 -9914983 - MSTA LTR MaLR 0 428 2 181 315 33 65 chr4 192413364 192413456 -9914891 + L2 LINE L2 3152 3240 -32 980 235 36 9 chr4 192413486 192413707 -9914640 - MIR SINE MIR -33 229 3 24 0 0 0 chr4 192413966 192413990 -9914357 + AT_rich Low_complexity Low_complexity 1 24 0 347 329 42 85 chr4 192415061 192415414 -9912933 - L2 LINE L2 -20 3252 2915 324 91 0 0 chr4 192416905 192416949 -9911398 - tRNA-Phe-TTC tRNA tRNA -32 44 1 186 254 111 16 chr4 192417146 192417209 -9911138 + L2 LINE L2 3244 3312 -1 382 163 48 27 chr4 192419085 192419232 -9909115 + CT-rich Low_complexity Low_complexity 4 153 0 21 0 0 0 chr4 192420848 192420869 -9907478 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 192423289 192423326 -9905021 + AT_rich Low_complexity Low_complexity 1 37 0 1623 142 93 3 chr4 192423605 192423916 -9904431 + MER44D DNA MER2_type 1 609 0 2145 82 10 7 chr4 192426399 192426690 -9901657 - AluSc SINE Alu -17 292 1 339 25 0 0 chr4 192427183 192427223 -9901124 + (TA)n Simple_repeat Simple_repeat 2 41 0 2269 91 0 3 chr4 192427912 192428209 -9900138 + AluSq SINE Alu 1 296 -17 203 316 79 43 chr4 192428646 192428785 -9899562 - MIR SINE MIR -72 190 47 329 279 196 15 chr4 192429634 192429838 -9898509 + L1ME2 LINE L1 5256 5496 -2312 231 222 157 19 chr4 192430026 192430134 -9898213 + L1ME2 LINE L1 5653 5775 -395 475 274 144 5 chr4 192430848 192431063 -9897284 - HAL1 LINE L1 -10 2497 2253 294 242 75 42 chr4 192431264 192431384 -9896963 - HAL1 LINE L1 -834 1673 1550 1399 273 67 44 chr4 192431418 192432242 -9896105 - HAL1 LINE L1 -929 1578 736 234 0 0 0 chr4 192432251 192432277 -9896070 + (T)n Simple_repeat Simple_repeat 1 26 0 295 295 11 21 chr4 192432716 192432811 -9895536 + L2 LINE L2 2851 2944 -370 244 292 115 73 chr4 192432923 192433115 -9895232 - MLT1I LTR MaLR -109 300 101 894 273 30 54 chr4 192433163 192433497 -9894850 + L2 LINE L2 2973 3298 -15 225 243 135 0 chr4 192434450 192434524 -9893823 + MARNA DNA Mariner 149 232 -354 180 0 0 0 chr4 192434797 192434817 -9893530 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 1922 78 90 8 chr4 192434829 192435097 -9893250 - AluSq SINE Alu -23 290 1 193 269 151 34 chr4 192435708 192435827 -9892520 + MIR SINE MIR 119 251 -11 760 289 78 0 chr4 192437330 192437562 -9890785 + MIR SINE MIR 13 262 0 2277 106 3 0 chr4 192438998 192439301 -9889046 + AluSp SINE Alu 1 304 -9 1312 209 138 10 chr4 192440168 192440566 -9887781 + LTR40c LTR ERVL 5 453 -12 207 167 42 0 chr4 192441899 192441947 -9886400 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 674 248 20 56 chr4 192442511 192442761 -9885586 + L1ME2 LINE L1 5916 6156 -8 2322 93 3 0 chr4 192442875 192443185 -9885162 + AluSx SINE Alu 1 311 -1 625 171 31 8 chr4 192443546 192443675 -9884672 + Charlie5 DNA MER1_type 2492 2623 0 376 324 29 84 chr4 192443694 192443969 -9884378 - L2 LINE L2 -688 2626 2367 287 273 0 23 chr4 192444039 192444127 -9884220 - MIR SINE MIR -128 134 49 2023 84 66 0 chr4 192444170 192444456 -9883891 + AluY SINE Alu 1 305 -6 1558 143 0 0 chr4 192444846 192445077 -9883270 + AluJb SINE Alu 1 231 -81 1488 186 7 18 chr4 192445280 192445565 -9882782 + AluJo SINE Alu 1 282 -30 23 33 0 0 chr4 192446334 192446364 -9881983 + AT_rich Low_complexity Low_complexity 1 30 0 1475 171 3 88 chr4 192446393 192446594 -9881753 - AluJb SINE Alu -12 300 136 1696 127 33 67 chr4 192446594 192446893 -9881454 + AluSx SINE Alu 1 289 -23 1475 171 3 88 chr4 192446893 192447019 -9881328 - AluJb SINE Alu -176 136 1 584 296 33 4 chr4 192448463 192448703 -9879644 - L1MEd LINE L1 -4969 1150 904 1671 177 0 23 chr4 192449057 192449357 -9878990 + AluJo SINE Alu 1 293 -19 230 346 25 0 chr4 192449705 192449786 -9878561 - MER117 DNA MER1_type 0 197 115 * 435 102 0 0 chr4 192449780 192449839 -9878508 + U2 snRNA snRNA 1 59 -129 278 275 0 0 chr4 192449837 192449906 -9878441 - MER117 DNA MER1_type -66 131 63 * 184 330 68 19 chr4 192452005 192452108 -9876239 - L2 LINE L2 -617 2697 2590 2604 198 36 0 chr4 192452108 192452612 -9875735 + MER74A LTR ERVL 7 528 -30 890 308 98 49 chr4 192452646 192452949 -9875398 - L2 LINE L2 -713 2601 2315 559 253 97 17 chr4 192452949 192453186 -9875161 + MER112 DNA MER1_type 1 256 0 890 308 98 49 chr4 192453186 192453685 -9874662 - L2 LINE L2 -999 2315 1759 236 357 27 9 chr4 192455531 192455643 -9872704 + L2 LINE L2 3200 3313 0 2227 99 3 0 chr4 192456228 192456520 -9871827 - AluSg SINE Alu -17 293 1 291 278 85 41 chr4 192456787 192456994 -9871353 - MIR SINE MIR -31 231 16 343 236 98 40 chr4 192457029 192457203 -9871144 - MER113 DNA MER1_type? -49 472 289 2222 85 3 3 chr4 192457210 192457492 -9870855 + AluSc SINE Alu 3 284 -25 2178 124 3 0 chr4 192458918 192459225 -9869122 - AluSx SINE Alu -4 308 1 247 211 19 0 chr4 192459966 192460018 -9868329 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 193 242 11 74 chr4 192460668 192460763 -9867584 + MIR SINE MIR 128 216 -46 2186 125 0 0 chr4 192461046 192461342 -9867005 + AluSx SINE Alu 1 296 -16 2631 39 0 0 chr4 192461814 192462120 -9866227 - AluY SINE Alu -5 306 1 2396 203 104 23 chr4 192462674 192463279 -9865068 + MLT1E1 LTR MaLR 1 654 0 1114 228 32 10 chr4 192463484 192463795 -9864552 + MER33 DNA MER1_type 2 319 -5 230 180 98 0 chr4 192463806 192463867 -9864480 - HAL1b LINE L1 -50 1298 1232 368 238 0 12 chr4 192464446 192464530 -9863817 - L2 LINE L2 0 3313 3231 485 235 12 53 chr4 192464531 192464701 -9863646 - L2 LINE L2 -900 2414 2252 242 192 77 0 chr4 192464690 192464742 -9863605 + L2 LINE L2 3208 3263 -50 * 2268 73 21 0 chr4 192465064 192465353 -9862994 + AluSp SINE Alu 1 295 -18 213 360 128 64 chr4 192465445 192465648 -9862699 - L2 LINE L2 -25 3247 3032 664 261 142 9 chr4 192465722 192465933 -9862414 - MIR SINE MIR -13 249 11 1948 137 13 13 chr4 192466533 192466832 -9861515 + AluJo SINE Alu 1 299 -13 806 262 57 25 chr4 192466994 192467276 -9861071 - L1MEd LINE L1 -5416 703 413 22 35 0 0 chr4 192469931 192469960 -9858387 + AT_rich Low_complexity Low_complexity 1 29 0 2259 107 3 0 chr4 192470411 192470720 -9857627 + AluSx SINE Alu 1 310 -2 361 300 67 0 chr4 192471286 192471406 -9856941 + MIR SINE MIR 81 208 -54 405 0 0 0 chr4 192472289 192472334 -9856013 + (TG)n Simple_repeat Simple_repeat 2 46 0 242 262 36 48 chr4 192472379 192472463 -9855884 - MIR3 SINE MIR -23 185 103 27 29 0 0 chr4 192472687 192472721 -9855626 + AT_rich Low_complexity Low_complexity 1 34 0 2128 114 0 7 chr4 192473598 192473897 -9854450 - AluSx SINE Alu -15 297 1 303 188 71 35 chr4 192474106 192474191 -9854156 - MIR SINE MIR -50 212 125 979 218 22 67 chr4 192474280 192474592 -9853755 + MLT1A2 LTR MaLR 1 298 -76 254 271 80 26 chr4 192474740 192474891 -9853456 - L1MEd LINE L1 -5957 162 4 310 327 164 19 chr4 192474892 192475051 -9853296 - MIR SINE MIR -49 213 32 534 136 0 0 chr4 192475158 192475276 -9853071 + (TGGA)n Simple_repeat Simple_repeat 3 120 0 202 256 24 49 chr4 192475546 192475628 -9852719 + MIR SINE MIR 61 140 -122 1976 93 108 0 chr4 192476356 192476634 -9851713 - AluSx SINE Alu -4 308 1 235 311 68 0 chr4 192476899 192476973 -9851374 + MIR3 SINE MIR 82 160 -48 621 284 225 23 chr4 192477343 192477863 -9850484 + L2 LINE L2 2498 3198 -115 2378 157 14 27 chr4 192477863 192478303 -9850044 - Tigger2a DNA MER2_type 0 434 1 621 284 225 23 chr4 192478303 192478439 -9849908 + L2 LINE L2 3198 3305 -8 823 228 22 0 chr4 192478464 192478648 -9849699 - AluJb SINE Alu -4 308 121 2122 87 0 17 chr4 192479438 192479725 -9848622 + AluSx SINE Alu 23 304 -8 705 238 70 70 chr4 192479727 192480029 -9848318 - L1MEd LINE L1 -5503 616 315 1017 165 0 0 chr4 192480081 192480239 -9848108 + AluJb SINE Alu 1 158 -154 284 47 0 0 chr4 192480241 192480284 -9848063 + AluY SINE Alu 260 302 0 2050 119 31 0 chr4 192480303 192480596 -9847751 + AluSc SINE Alu 1 302 -7 414 261 43 26 chr4 192480728 192480843 -9847504 + L2 LINE L2 3191 3307 -6 266 248 48 57 chr4 192480843 192480948 -9847399 - L1MEd LINE L1 -6010 109 6 198 103 0 0 chr4 192481842 192481871 -9846476 + (T)n Simple_repeat Simple_repeat 1 29 0 1974 110 43 4 chr4 192482167 192482448 -9845899 + AluSx SINE Alu 1 292 -20 235 250 0 33 chr4 192482821 192482881 -9845466 + L1MEd LINE L1 6 63 -6056 210 37 0 0 chr4 192483063 192483090 -9845257 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 211 226 0 48 chr4 192483118 192483180 -9845167 + CT-rich Low_complexity Low_complexity 2 60 0 191 184 26 0 chr4 192483997 192484035 -9844312 - L2 LINE L2 -8 3305 3267 1724 176 0 28 chr4 192484825 192485144 -9843203 + AluJb SINE Alu 1 310 -2 1953 139 3 13 chr4 192485604 192485905 -9842442 + AluJb SINE Alu 1 298 -14 223 244 26 64 chr4 192486467 192486545 -9841802 - MIR SINE MIR -71 191 117 225 94 0 0 chr4 192488595 192488627 -9839720 + (T)n Simple_repeat Simple_repeat 1 32 0 290 322 76 17 chr4 192489296 192489414 -9838933 + L3 LINE CR1 1429 1553 -24 438 276 41 53 chr4 192489416 192489586 -9838761 - L3 LINE CR1 -145 1432 1265 776 196 88 10 chr4 192491152 192491356 -9836991 + L1M4 LINE L1 4155 4374 -1772 2749 158 23 6 chr4 192493087 192493605 -9834742 - L1MA4 LINE L1 -5 6295 5769 437 94 0 115 chr4 192493618 192493714 -9834633 - L1PA8 LINE L1 -1 6171 6087 2614 138 43 8 chr4 192493714 192494199 -9834148 - L1MA4 LINE L1 -515 5785 5290 281 26 26 0 chr4 192494220 192494258 -9834089 + (TTG)n Simple_repeat Simple_repeat 1 39 0 243 170 0 0 chr4 192494576 192494623 -9833724 + (CATAA)n Simple_repeat Simple_repeat 2 48 0 22 0 0 0 chr4 192494846 192494868 -9833479 + AT_rich Low_complexity Low_complexity 1 22 0 1521 204 13 10 chr4 192495387 192495695 -9832652 - AluJb SINE Alu -3 309 1 1296 176 45 83 chr4 192495770 192496082 -9832265 + AluJb SINE Alu 1 300 -12 186 319 53 44 chr4 192496099 192496212 -9832135 - MIR SINE MIR -69 139 26 441 296 73 28 chr4 192496364 192496543 -9831804 - MIR SINE MIR -73 189 3 2345 87 0 3 chr4 192497003 192497314 -9831033 - AluY SINE Alu -1 310 1 303 151 14 82 chr4 192497612 192497685 -9830662 + L2 LINE L2 3171 3238 -75 520 147 0 0 chr4 192497997 192498072 -9830275 - FLAM SINE Alu -20 123 49 754 176 0 15 chr4 192498285 192498421 -9829926 + AluJ SINE Alu 1 134 -178 37 23 0 0 chr4 192498421 192498465 -9829882 + AT_rich Low_complexity Low_complexity 1 44 0 561 31 104 12 chr4 192498465 192498628 -9829719 + (TA)n Simple_repeat Simple_repeat 2 179 0 693 208 0 8 chr4 192498628 192498758 -9829589 + AluJ SINE Alu 133 261 -51 1937 112 49 0 chr4 192498883 192499170 -9829177 + AluSq SINE Alu 1 301 -12 241 243 14 14 chr4 192499500 192499570 -9828777 + MIR SINE MIR 74 143 -119 433 246 144 8 chr4 192499577 192499695 -9828652 - L2 LINE L2 -1 3312 3179 28 48 0 0 chr4 192499763 192499805 -9828542 + AT_rich Low_complexity Low_complexity 1 42 0 2304 93 0 10 chr4 192499816 192500117 -9828230 - AluY SINE Alu -13 298 1 1808 141 11 3 chr4 192500120 192500284 -9828063 - AluSg SINE Alu -24 286 118 279 0 0 0 chr4 192500284 192500315 -9828032 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1808 141 11 3 chr4 192500315 192500434 -9827913 - AluSg SINE Alu -192 118 1 256 255 193 14 chr4 192501670 192501815 -9826532 - L2 LINE L2 -146 3167 2997 2093 111 26 41 chr4 192502026 192502368 -9825979 + MER1B DNA MER1_type 1 337 0 1122 223 75 16 chr4 192502687 192503005 -9825342 + MER58B DNA MER1_type 5 341 0 897 274 32 16 chr4 192503208 192503456 -9824891 - MIR SINE MIR -3 259 8 827 256 34 21 chr4 192503990 192504224 -9824123 - MIR SINE MIR -13 249 13 271 410 25 0 chr4 192504588 192504710 -9823637 - L3 LINE CR1 -70 1507 1383 337 253 56 81 chr4 192505832 192506030 -9822317 - MER117 DNA MER1_type 0 197 5 1565 87 4 13 chr4 192506369 192506599 -9821748 + L1PA10 LINE L1 5931 6158 -10 200 60 80 20 chr4 192506619 192506669 -9821678 + T-rich Low_complexity Low_complexity 4 56 0 228 292 0 42 chr4 192507104 192507176 -9821171 - L2 LINE L2 -5 3267 3199 258 309 10 31 chr4 192507472 192507569 -9820778 - 7SK RNA RNA -96 97 3 232 264 94 38 chr4 192507885 192507991 -9820356 - L1ME4a LINE L1 -55 6066 5955 244 262 162 5 chr4 192508333 192508524 -9819823 - L1ME4a LINE L1 -2331 5477 5257 1795 169 0 25 chr4 192508799 192509118 -9819229 - AluJo SINE Alu -1 311 1 420 243 176 0 chr4 192509510 192509646 -9818701 - MIR SINE MIR -21 241 82 336 312 178 0 chr4 192509819 192509976 -9818371 - MER5A DNA MER1_type -2 187 3 698 213 46 6 chr4 192510009 192510183 -9818164 + MER3 DNA MER1_type 28 208 -1 198 0 0 0 chr4 192510591 192510613 -9817734 + (A)n Simple_repeat Simple_repeat 1 22 0 530 238 67 36 chr4 192511138 192511331 -9817016 - L1MB7 LINE L1 -2 6182 5984 1886 95 72 4 chr4 192512338 192512602 -9815745 + AluSg SINE Alu 1 282 -28 28 0 0 0 chr4 192512910 192512938 -9815409 + AT_rich Low_complexity Low_complexity 1 28 0 1877 122 20 36 chr4 192513076 192513380 -9814967 + AluJb SINE Alu 1 299 -13 595 129 76 91 chr4 192513501 192513633 -9814714 + FLAM_C SINE Alu 2 131 -2 554 297 95 13 chr4 192513865 192514097 -9814250 + L3b LINE CR1 1116 1366 -217 847 177 23 23 chr4 192514421 192514596 -9813751 - FAM SINE Alu 0 175 1 1976 42 4 0 chr4 192514636 192514877 -9813470 + L1PA4 LINE L1 5911 6152 -3 483 299 73 0 chr4 192515832 192515884 -9812463 - MIR SINE MIR -6 256 209 222 118 0 0 chr4 192515884 192515918 -9812429 + (TG)n Simple_repeat Simple_repeat 1 34 0 483 299 73 0 chr4 192515918 192516042 -9812305 - MIR SINE MIR -53 209 67 21 36 0 0 chr4 192516776 192516804 -9811543 + AT_rich Low_complexity Low_complexity 1 28 0 195 227 23 0 chr4 192516893 192516937 -9811410 + L2 LINE L2 3225 3269 -3 27 73 0 0 chr4 192517854 192517909 -9810438 + AT_rich Low_complexity Low_complexity 1 55 0 216 0 0 0 chr4 192520465 192520489 -9807858 + (T)n Simple_repeat Simple_repeat 1 24 0 1615 82 60 19 chr4 192521139 192521407 -9806940 + L1MA3 LINE L1 6027 6305 0 22 0 0 0 chr4 192521418 192521440 -9806907 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr4 192522116 192522148 -9806199 + AT_rich Low_complexity Low_complexity 1 32 0 52 58 0 0 chr4 192522217 192522304 -9806043 + AT_rich Low_complexity Low_complexity 1 87 0 276 178 206 79 chr4 192522340 192522593 -9805754 + L1ME4a LINE L1 5833 6117 -4 536 77 13 0 chr4 192522838 192522916 -9805431 - MADE1 DNA Mariner 0 80 2 564 15 0 0 chr4 192522965 192523030 -9805317 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 285 115 48 0 chr4 192523332 192523388 -9804959 + MLT1B LTR MaLR 1 61 -313 247 120 60 0 chr4 192523397 192523447 -9804900 + MLT1C LTR MaLR 370 422 -45 2141 121 7 7 chr4 192523930 192523942 -9804405 - AluSg SINE Alu -13 297 286 432 0 0 0 chr4 192523942 192523990 -9804357 + (TG)n Simple_repeat Simple_repeat 2 49 0 2141 121 7 7 chr4 192523990 192524274 -9804073 - AluSg SINE Alu -23 287 1 192 220 0 85 chr4 192524351 192524410 -9803937 - MIR SINE MIR -137 125 72 51 58 0 0 chr4 192525104 192525190 -9803157 + AT_rich Low_complexity Low_complexity 1 86 0 1945 112 3 64 chr4 192525770 192526083 -9802264 + AluSx SINE Alu 1 294 -18 21 36 0 0 chr4 192526166 192526194 -9802153 + AT_rich Low_complexity Low_complexity 1 28 0 190 210 12 99 chr4 192526234 192526315 -9802032 - MIR SINE MIR -71 191 118 555 280 133 28 chr4 192526685 192526903 -9801444 - L3 LINE CR1 -6 1571 1331 811 103 9 9 chr4 192526973 192527089 -9801258 - FLAM_C SINE Alu -25 118 3 184 241 24 24 chr4 192527093 192527176 -9801171 - L3 LINE CR1 -304 1273 1191 272 83 21 0 chr4 192527182 192527230 -9801117 + (TTTTTG)n Simple_repeat Simple_repeat 2 50 0 1068 251 165 59 chr4 192529841 192530599 -9797748 + L2 LINE L2 2513 3313 0 385 324 66 16 chr4 192530741 192530923 -9797424 + L2 LINE L2 2492 2682 -632 1513 246 70 0 chr4 192531105 192531532 -9796815 + L1ME2 LINE L1 5455 5911 -253 291 288 0 15 chr4 192532445 192532511 -9795836 + MIR SINE MIR 84 148 -60 2300 104 0 0 chr4 192532545 192532844 -9795503 - AluSc SINE Alu -10 299 1 1496 122 9 0 chr4 192532938 192533151 -9795196 - AluSg/x SINE Alu -12 300 86 1202 133 78 32 chr4 192533520 192533738 -9794609 + MER30 DNA MER1_type 1 228 -2 211 205 0 0 chr4 192534479 192534518 -9793829 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 1013 194 53 0 chr4 192535316 192535522 -9792825 - MER20 DNA MER1_type -1 218 2 812 254 250 37 chr4 192535547 192536039 -9792308 - L2 LINE L2 -773 2541 1945 2580 175 31 13 chr4 192536292 192536835 -9791512 - MER68 LTR ERV1 -7 555 3 268 275 259 8 chr4 192537057 192537188 -9791159 + MIR SINE MIR 92 255 -7 1827 149 48 7 chr4 192538088 192538377 -9789970 + AluJb SINE Alu 2 302 -10 1829 107 16 0 chr4 192538486 192538738 -9789609 + AluSg1 SINE Alu 35 290 -19 1874 143 3 20 chr4 192539461 192539762 -9788585 + AluJo SINE Alu 1 296 -16 483 203 0 81 chr4 192539832 192539955 -9788392 + MIR SINE MIR 150 262 0 29 47 0 0 chr4 192539959 192540002 -9788345 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr4 192543368 192543392 -9784955 + AT_rich Low_complexity Low_complexity 1 24 0 378 268 24 16 chr4 192543688 192543815 -9784532 + MER94 DNA DNA 4 131 -3 2481 75 0 0 chr4 192544132 192544439 -9783908 + AluSx SINE Alu 1 307 -5 303 279 191 19 chr4 192544820 192545035 -9783312 + MIR SINE MIR 1 252 -10 207 0 0 0 chr4 192546131 192546154 -9782193 + (ATTG)n Simple_repeat Simple_repeat 3 25 0 846 172 11 58 chr4 192546154 192546317 -9782030 - AluJb SINE Alu -25 287 131 405 117 0 0 chr4 192547089 192547149 -9781198 - AluS SINE Alu -258 60 1 262 314 85 39 chr4 192547564 192547717 -9780630 + MIR SINE MIR 14 173 -89 1782 166 3 11 chr4 192548289 192548573 -9779774 + AluJo SINE Alu 1 282 -30 297 213 0 0 chr4 192548582 192548629 -9779718 - AluSg/x SINE Alu -122 178 132 1875 176 0 10 chr4 192548635 192548937 -9779410 - AluJb SINE Alu -13 299 1 319 288 12 0 chr4 192548949 192549029 -9779318 - MIR SINE MIR -85 123 43 21 0 0 0 chr4 192549128 192549149 -9779198 + AT_rich Low_complexity Low_complexity 1 21 0 34 24 0 0 chr4 192549269 192549310 -9779037 + AT_rich Low_complexity Low_complexity 1 41 0 1095 232 88 23 chr4 192549344 192549876 -9778471 - Charlie7 DNA MER1_type -481 2131 1525 2144 111 0 16 chr4 192549876 192550182 -9778165 + AluSx SINE Alu 1 301 -11 1095 232 88 23 chr4 192550182 192550232 -9778115 - Charlie7 DNA MER1_type -1087 1525 1480 389 254 200 0 chr4 192550257 192550442 -9777905 - Charlie7 DNA MER1_type -2318 294 73 180 257 248 28 chr4 192550507 192550616 -9777731 + MIR3 SINE MIR 9 141 -67 246 32 0 0 chr4 192550630 192550661 -9777686 + (CA)n Simple_repeat Simple_repeat 2 32 0 21 36 0 0 chr4 192551001 192551029 -9777318 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 192551085 192551106 -9777241 + AT_rich Low_complexity Low_complexity 1 21 0 210 71 0 0 chr4 192552934 192552962 -9775385 + (TA)n Simple_repeat Simple_repeat 2 29 0 256 200 520 8 chr4 192553863 192553988 -9774359 + MER5A DNA MER1_type 1 189 0 826 20 0 0 chr4 192554131 192554229 -9774118 - L1HS LINE L1 -195 5960 5863 1754 19 0 0 chr4 192554229 192554429 -9773918 + L1PA2 LINE L1 5951 6155 0 330 50 0 0 chr4 192554432 192554472 -9773875 + AluY SINE Alu 66 105 -196 2203 102 0 17 chr4 192557039 192557334 -9771013 + AluSc SINE Alu 1 290 -19 1124 138 0 0 chr4 192558635 192558794 -9769553 - FRAM SINE Alu -25 151 1 254 30 30 0 chr4 192558807 192558840 -9769507 + AluY SINE Alu 17 50 -252 585 279 12 36 chr4 192559221 192559386 -9768961 - MIR3 SINE MIR -6 202 42 259 267 0 0 chr4 192560683 192560743 -9767604 + L3 LINE CR1 646 705 -872 187 304 85 75 chr4 192560872 192561073 -9767274 - L2 LINE L2 -938 2376 2174 236 159 32 32 chr4 192561130 192561193 -9767154 - MLT1I LTR MaLR 0 409 347 1299 229 90 67 chr4 192561214 192561647 -9766700 - MLT1F LTR MaLR -99 443 1 479 300 137 25 chr4 192561647 192561922 -9766425 - MLT1I LTR MaLR -57 352 47 2083 126 0 0 chr4 192562136 192562421 -9765926 + AluSx SINE Alu 1 285 -27 23 0 0 0 chr4 192562434 192562457 -9765890 + AT_rich Low_complexity Low_complexity 1 23 0 3275 188 19 15 chr4 192562895 192563566 -9764781 - L1MB2 LINE L1 -2 6169 5496 2105 122 10 14 chr4 192563965 192564261 -9764086 - AluSx SINE Alu -17 295 1 1516 228 78 44 chr4 192564268 192564769 -9763578 - L1ME3A LINE L1 -8 6162 5645 255 344 26 46 chr4 192565685 192565836 -9762511 + MIR SINE MIR 103 250 -12 182 65 65 22 chr4 192566261 192566307 -9762040 + CT-rich Low_complexity Low_complexity 2 49 0 315 0 0 0 chr4 192566566 192566601 -9761746 + (TA)n Simple_repeat Simple_repeat 1 35 0 2146 98 0 20 chr4 192567085 192567390 -9760957 + AluSx SINE Alu 1 299 -13 302 173 19 0 chr4 192567814 192567866 -9760481 - L2 LINE L2 0 3313 3261 44 75 0 0 chr4 192568724 192568817 -9759530 + AT_rich Low_complexity Low_complexity 1 93 0 700 240 18 42 chr4 192571437 192571654 -9756693 + MER112 DNA MER1_type 1 212 -48 909 192 12 17 chr4 192572524 192572696 -9755651 + FAM SINE Alu 1 171 -4 396 241 147 0 chr4 192572782 192572898 -9755449 - L2 LINE L2 -2 3311 3179 430 278 189 28 chr4 192574372 192574584 -9753763 + MIR SINE MIR 17 262 0 182 256 68 77 chr4 192574538 192574655 -9753692 - MIR SINE MIR -31 231 116 * 301 259 7 82 chr4 192574696 192574831 -9753516 + L1M4 LINE L1 3073 3197 -2949 280 314 181 0 chr4 192575501 192575606 -9752741 - L2 LINE L2 -10 3262 3139 277 338 104 47 chr4 192575736 192576203 -9752144 - L2 LINE L2 -218 3054 2564 22 56 0 0 chr4 192576721 192576757 -9751590 + AT_rich Low_complexity Low_complexity 1 36 0 229 175 0 53 chr4 192579157 192579214 -9749133 + (TATG)n Simple_repeat Simple_repeat 3 56 0 205 162 0 0 chr4 192579214 192579251 -9749096 + (CA)n Simple_repeat Simple_repeat 2 38 0 1236 54 0 0 chr4 192580323 192580471 -9747876 + AluY SINE Alu 160 307 -4 342 330 18 18 chr4 192580822 192580934 -9747413 + L2 LINE L2 3161 3272 0 288 285 218 12 chr4 192581124 192581289 -9747058 - MIR SINE MIR 0 262 64 465 175 10 29 chr4 192581517 192581620 -9746727 - AluSq/x SINE Alu -169 144 44 332 217 198 25 chr4 192581719 192581873 -9746474 + MIR SINE MIR 40 221 -41 23 0 0 0 chr4 192582024 192582047 -9746300 + AT_rich Low_complexity Low_complexity 1 23 0 1771 153 3 28 chr4 192582118 192582438 -9745909 - AluJb SINE Alu 0 312 1 2065 92 57 0 chr4 192583434 192583717 -9744630 - AluSq SINE Alu -14 299 1 1217 172 172 0 chr4 192584076 192584344 -9744003 - MER7A DNA MER2_type -3 343 32 231 103 0 0 chr4 192585872 192585911 -9742436 + (CA)n Simple_repeat Simple_repeat 2 40 0 264 136 34 34 chr4 192588283 192588371 -9739976 + (CACCC)n Simple_repeat Simple_repeat 2 89 0 732 287 57 87 chr4 192591402 192591862 -9736485 + L2 LINE L2 2827 3272 0 2136 63 42 14 chr4 192592560 192592845 -9735502 - AluY SINE Alu -15 296 4 636 215 210 5 chr4 192594757 192594943 -9733404 + MER58A DNA MER1_type 1 224 0 1446 160 104 8 chr4 192596066 192596334 -9732013 - AluJo SINE Alu -18 294 1 2543 64 0 6 chr4 192596632 192596946 -9731401 - AluSx SINE Alu 0 312 1 380 279 218 7 chr4 192597264 192597544 -9730803 - L1 LINE L1 -2861 3285 2947 417 168 32 21 chr4 192597663 192597758 -9730589 - FRAM SINE Alu -9 167 72 2356 78 7 3 chr4 192602272 192602578 -9725769 + AluY SINE Alu 1 307 -4 522 159 0 0 chr4 192607339 192607427 -9720920 + FLAM_A SINE Alu 39 126 -16 21 0 0 0 chr4 192607461 192607482 -9720865 + AT_rich Low_complexity Low_complexity 1 21 0 426 211 32 21 chr4 192607991 192608086 -9720261 + MIR SINE MIR 16 111 -151 203 342 143 19 chr4 192608732 192608893 -9719454 - L2 LINE L2 -554 2760 2580 252 228 98 0 chr4 192609120 192609212 -9719135 - L1ME4a LINE L1 -12 6109 6009 334 237 144 0 chr4 192609427 192609524 -9718823 - MIR SINE MIR -64 144 34 807 167 6 19 chr4 192609947 192610103 -9718244 + AluSp SINE Alu 147 300 -13 545 261 78 7 chr4 192610898 192611051 -9717296 + MIR3 SINE MIR 31 194 -14 24 0 0 0 chr4 192612574 192612598 -9715749 + AT_rich Low_complexity Low_complexity 1 24 0 244 300 93 21 chr4 192613109 192613249 -9715098 + MIR SINE MIR 34 183 -79 708 114 0 117 chr4 192613348 192613490 -9714857 + L1MA4A LINE L1 5837 5898 -276 2138 61 11 0 chr4 192613490 192613763 -9714584 + L1PA7 LINE L1 5870 6152 -2 708 114 0 117 chr4 192613763 192613800 -9714547 + L1MA4A LINE L1 5898 5938 -236 369 291 24 14 chr4 192617164 192617316 -9711031 - MIR SINE MIR -55 153 5 35 0 0 0 chr4 192620270 192620305 -9708042 + AT_rich Low_complexity Low_complexity 1 35 0 1995 156 0 0 chr4 192620316 192620624 -9707723 + AluJb SINE Alu 1 308 -4 1728 117 15 15 chr4 192621168 192621441 -9706906 + AluSx SINE Alu 1 273 -39 21 0 0 0 chr4 192624027 192624048 -9704299 + AT_rich Low_complexity Low_complexity 1 21 0 1734 150 11 11 chr4 192625354 192625640 -9702707 + AluJb SINE Alu 2 287 -25 448 257 118 32 chr4 192625731 192625918 -9702429 - L2 LINE L2 -4 3309 3107 2102 110 43 8 chr4 192626041 192626415 -9701932 - LTR7 LTR ERV1 -63 387 1 2349 80 48 13 chr4 192626415 192626792 -9701555 - HERVH LTR ERV1 0 7713 7324 1017 172 45 0 chr4 192626792 192627136 -9701211 - HERVH LTR ERV1 -1894 5819 2831 1297 243 60 28 chr4 192627803 192628419 -9699928 - Charlie2a DNA MER1_type -565 2297 1662 3128 154 34 2 chr4 192628419 192628982 -9699365 + Tigger1 DNA MER2_type 1 581 -1837 243 148 16 33 chr4 192629292 192629353 -9698994 + (GTGTG)n Simple_repeat Simple_repeat 2 61 0 281 324 19 29 chr4 192630413 192630518 -9697829 - MIR SINE MIR -60 148 45 635 254 93 57 chr4 192630889 192631158 -9697189 - MER68 LTR ERV1 0 562 275 1303 138 60 0 chr4 192631158 192631375 -9696972 - MER30 DNA MER1_type 0 230 1 635 254 93 57 chr4 192631375 192631471 -9696876 - MER68 LTR ERV1 -287 275 184 299 253 5 54 chr4 192632296 192632482 -9695865 + A-rich Low_complexity Low_complexity 4 180 0 244 290 6 49 chr4 192632773 192632956 -9695391 + G-rich Low_complexity Low_complexity 6 180 0 2202 104 13 3 chr4 192633058 192633356 -9694991 + AluSq SINE Alu 1 301 -12 1154 144 10 10 chr4 192634061 192634256 -9694091 - AluJo SINE Alu -30 282 88 1714 151 34 20 chr4 192634728 192635026 -9693321 - AluJb SINE Alu -10 302 1 741 255 48 30 chr4 192635293 192635524 -9692823 - MIR SINE MIR -23 239 5 180 0 0 0 chr4 192636401 192636421 -9691926 + (A)n Simple_repeat Simple_repeat 1 20 0 372 285 106 41 chr4 192638175 192638208 -9690139 + MIR SINE MIR 1 30 -232 2528 50 3 0 chr4 192638208 192638510 -9689837 + AluY SINE Alu 1 303 -8 372 285 106 41 chr4 192638510 192638722 -9689625 + MIR SINE MIR 30 262 0 2523 74 0 0 chr4 192639724 192640033 -9688314 + AluY SINE Alu 1 309 -2 413 264 106 34 chr4 192642647 192642882 -9685465 + L1MC4 LINE L1 7790 8041 -1 2233 102 0 19 chr4 192643341 192643654 -9684693 + AluSg SINE Alu 3 309 -1 396 0 0 0 chr4 192643810 192643854 -9684493 + (TG)n Simple_repeat Simple_repeat 2 45 0 440 278 65 42 chr4 192644421 192644637 -9683710 - L2 LINE L2 -544 2770 2550 340 226 189 0 chr4 192644637 192644743 -9683604 - L2 LINE L2 -1042 2272 2147 186 43 0 0 chr4 192645064 192645087 -9683260 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 256 235 0 0 chr4 192645100 192645151 -9683196 - L2 LINE L2 -8 3264 3214 304 338 58 7 chr4 192646859 192647013 -9681334 - L3b LINE CR1 -142 1441 1280 23 54 0 0 chr4 192647528 192647565 -9680782 + AT_rich Low_complexity Low_complexity 1 37 0 802 264 0 6 chr4 192650747 192650921 -9677426 + MER5B DNA MER1_type 6 178 0 237 108 0 0 chr4 192652128 192652165 -9676182 + (T)n Simple_repeat Simple_repeat 1 37 0 900 270 27 9 chr4 192652371 192652593 -9675754 - MIR SINE MIR -15 247 22 27 0 0 0 chr4 192654913 192654940 -9673407 + AT_rich Low_complexity Low_complexity 1 27 0 1598 171 7 16 chr4 192655501 192655806 -9672541 - AluSx SINE Alu -10 302 1 1133 124 15 15 chr4 192659965 192660167 -9668180 + AluSc SINE Alu 83 284 -25 1146 90 9 57 chr4 192661985 192662197 -9666150 - AluSc SINE Alu -107 202 1 1006 209 172 21 chr4 192662209 192662644 -9665703 - MER69 DNA AcHobo -213 2313 1813 2450 252 124 5 chr4 192662647 192663394 -9664953 - MER69 DNA AcHobo -1690 836 1 319 174 82 87 chr4 192665038 192665234 -9663113 - Charlie2 DNA MER1_type -408 2454 2260 408 219 62 0 chr4 192665235 192665363 -9662984 - Charlie2 DNA MER1_type -545 2317 2182 213 39 0 0 chr4 192666040 192666066 -9662281 + (TG)n Simple_repeat Simple_repeat 2 27 0 26 30 0 0 chr4 192666066 192666099 -9662248 + AT_rich Low_complexity Low_complexity 1 33 0 7157 33 13 6 chr4 192666196 192667260 -9661087 - L1PA2 LINE L1 -1 6154 5089 624 220 159 9 chr4 192668121 192668335 -9660012 + MIR SINE MIR 1 246 -16 221 286 0 18 chr4 192668405 192668461 -9659886 - L2 LINE L2 -1041 2273 2219 2251 53 13 20 chr4 192668605 192668905 -9659442 + AluY SINE Alu 1 298 -13 2198 116 7 0 chr4 192669430 192669733 -9658614 - AluSx SINE Alu -7 305 1 252 257 10 50 chr4 192670571 192670672 -9657675 - FRAM SINE Alu -1 165 69 249 57 0 0 chr4 192671112 192671147 -9657200 + (GA)n Simple_repeat Simple_repeat 1 35 0 305 188 248 0 chr4 192673789 192673906 -9654441 + MER69 DNA AcHobo 1 146 -1080 791 197 31 0 chr4 192674887 192675080 -9653267 - AluSx SINE Alu -113 199 1 239 228 122 100 chr4 192676543 192676723 -9651624 - MIR3 SINE MIR -7 201 18 2475 71 3 3 chr4 192676791 192677101 -9651246 + AluSq SINE Alu 1 310 -3 194 125 0 25 chr4 192677334 192677374 -9650973 + (TA)n Simple_repeat Simple_repeat 1 39 0 241 143 24 48 chr4 192679089 192679173 -9649174 + (CCA)n Simple_repeat Simple_repeat 3 84 0 2337 72 3 0 chr4 192683737 192684029 -9644318 + AluSp SINE Alu 1 293 -20 28 61 0 0 chr4 192685927 192685976 -9642371 + AT_rich Low_complexity Low_complexity 1 49 0 2430 62 0 7 chr4 192687637 192687942 -9640405 - AluY SINE Alu -8 303 1 22 0 0 0 chr4 192688842 192688864 -9639483 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 192689519 192689540 -9638807 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr4 192690729 192690753 -9637594 + (A)n Simple_repeat Simple_repeat 1 24 0 16402 41 1 1 chr4 192691063 192693214 -9635133 + L1P LINE L1 1135 3285 -2861 6121 98 18 45 chr4 192693392 192694375 -9633972 - THE1C-int LTR MaLR -623 957 1 2042 121 15 68 chr4 192694375 192694414 -9633933 - THE1C LTR MaLR 0 375 335 2425 67 0 3 chr4 192694414 192694713 -9633634 + AluY SINE Alu 1 298 -13 2042 121 15 68 chr4 192694713 192695069 -9633278 - THE1C LTR MaLR -40 335 1 197 98 33 33 chr4 192695069 192695130 -9633217 + (CA)n Simple_repeat Simple_repeat 1 61 0 400 260 24 0 chr4 192695692 192695815 -9632532 - L1ME LINE L1 -430 5691 5566 485 266 99 79 chr4 192695901 192696393 -9631954 - L1ME LINE L1 -658 5463 4954 327 211 79 79 chr4 192696515 192696629 -9631718 - L2 LINE L2 -1 3312 3199 612 297 62 58 chr4 192696653 192697134 -9631213 - L2 LINE L2 -435 2879 2397 23 0 0 0 chr4 192698346 192698369 -9629978 + AT_rich Low_complexity Low_complexity 1 23 0 1989 137 0 13 chr4 192800897 192801212 -9527135 - AluJb SINE Alu -1 311 1 2126 108 3 0 chr4 192802011 192802308 -9526039 - AluSx SINE Alu -10 302 5 453 337 31 31 chr4 192802318 192802514 -9525833 - L2 LINE L2 -1 3271 3076 501 176 35 0 chr4 192802937 192803022 -9525325 + AluJ/FRAM SINE Alu 223 310 -2 823 183 11 0 chr4 192803024 192803199 -9525148 + GA-rich Low_complexity Low_complexity 1 177 0 2359 81 0 3 chr4 192803489 192803787 -9524560 - AluY SINE Alu -14 297 1 21 0 0 0 chr4 192804293 192804314 -9524033 + AT_rich Low_complexity Low_complexity 1 21 0 970 121 25 6 chr4 192804993 192805150 -9523197 + MER1B DNA MER1_type 1 160 -137 1656 123 8 0 chr4 192805259 192805502 -9522845 + L1PA15 LINE L1 5796 6040 -125 1090 149 11 0 chr4 192805502 192805677 -9522670 + AluSg/x SINE Alu 133 309 -3 785 183 0 14 chr4 192805678 192805820 -9522527 + L1PA15 LINE L1 6026 6165 0 632 279 91 10 chr4 192805879 192806087 -9522260 + L2 LINE L2 2115 2339 -975 1380 164 46 39 chr4 192806092 192806442 -9521905 - MSTA LTR MaLR -12 416 1 262 319 6 95 chr4 192806532 192806701 -9521646 + L2 LINE L2 2461 2614 -700 797 170 15 7 chr4 192806795 192806930 -9521417 + AluJo SINE Alu 2 137 -175 330 87 0 0 chr4 192806965 192807011 -9521336 + (CA)n Simple_repeat Simple_repeat 1 46 0 241 175 175 61 chr4 192807037 192807113 -9521234 + L2 LINE L2 2736 2831 -483 448 32 254 0 chr4 192807113 192807176 -9521171 - MADE1 DNA Mariner -1 79 1 241 175 175 61 chr4 192807176 192807213 -9521134 + L2 LINE L2 2831 2862 -452 1916 106 4 0 chr4 192807254 192807500 -9520847 - AluSx SINE Alu -64 248 2 381 214 60 0 chr4 192807500 192807584 -9520763 + MER3 DNA MER1_type 121 209 0 686 302 134 22 chr4 192807606 192807927 -9520420 + L2 LINE L2 2949 3305 -8 207 114 0 0 chr4 192807931 192807966 -9520381 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 1137 172 5 0 chr4 192808211 192808403 -9519944 - Tigger2 DNA MER2_type -2523 195 3 7083 183 48 45 chr4 192808405 192810238 -9518109 - L1M2 LINE L1 -743 5403 3736 211 200 0 0 chr4 192810328 192810368 -9517979 + CT-rich Low_complexity Low_complexity 2 41 0 279 0 0 0 chr4 192810438 192810469 -9517878 + (TG)n Simple_repeat Simple_repeat 2 32 0 740 286 107 15 chr4 192811053 192811389 -9516958 + L1MEd LINE L1 3 369 -5750 306 0 0 0 chr4 192812128 192812162 -9516185 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1872 137 6 48 chr4 192812255 192812570 -9515777 + AluSp SINE Alu 1 302 -11 2319 137 34 47 chr4 192812702 192813149 -9515198 - L1MA7 LINE L1 -7 6284 5844 744 129 0 68 chr4 192813261 192813393 -9514954 + MER1B DNA MER1_type 217 339 0 618 216 72 0 chr4 192813500 192813653 -9514694 - MER58C DNA MER1_type -8 207 44 2406 182 67 35 chr4 192813739 192813888 -9514459 - L1MC3 LINE L1 0 7785 7642 2305 99 0 0 chr4 192813888 192814182 -9514165 + AluSg SINE Alu 1 294 -16 2406 182 67 35 chr4 192814182 192814581 -9513766 - L1MC3 LINE L1 -143 7642 7219 334 164 41 0 chr4 192815268 192815341 -9513006 + L1MB7 LINE L1 5413 5488 -692 1739 153 53 20 chr4 192815348 192815649 -9512698 + AluSx SINE Alu 1 311 -1 272 95 48 16 chr4 192815650 192815713 -9512634 + GA-rich Low_complexity Low_complexity 5 69 0 2926 181 39 25 chr4 192815716 192816351 -9511996 + L1MB7 LINE L1 5494 6137 -47 2167 97 13 24 chr4 192816512 192816810 -9511537 + AluSq SINE Alu 1 295 -18 4670 155 22 36 chr4 192816919 192817791 -9510556 + L1MB3 LINE L1 5317 6176 -7 2016 167 14 8 chr4 192817806 192818165 -9510182 + L1MB4 LINE L1 5820 6180 0 201 74 0 0 chr4 192818936 192818963 -9509384 + (A)n Simple_repeat Simple_repeat 1 27 0 1025 166 90 31 chr4 192819699 192819922 -9508425 - MER106A DNA MER1_type 0 236 1 349 298 52 58 chr4 192819998 192820189 -9508158 + MIR SINE MIR 2 191 -71 196 194 0 0 chr4 192821225 192821261 -9507086 + L2 LINE L2 3227 3262 -10 298 271 16 54 chr4 192821312 192821441 -9506906 - MLT1I LTR MaLR -14 395 272 342 133 0 0 chr4 192823030 192823090 -9505257 + L1MC4 LINE L1 7983 8042 0 2234 113 13 0 chr4 192823216 192823516 -9504831 + AluSx SINE Alu 2 305 -7 2241 125 3 0 chr4 192823517 192823828 -9504519 + AluSx SINE Alu 1 312 0 336 24 0 0 chr4 192824617 192824658 -9503689 + (TC)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr4 192825178 192825200 -9503147 + AT_rich Low_complexity Low_complexity 1 22 0 838 193 0 44 chr4 192825498 192825679 -9502668 - MIR SINE MIR -78 184 12 243 61 0 0 chr4 192825815 192825848 -9502499 + (T)n Simple_repeat Simple_repeat 1 33 0 1904 158 13 0 chr4 192825900 192826198 -9502149 + AluJb SINE Alu 1 302 -10 302 311 42 25 chr4 192826488 192826607 -9501740 + MIR SINE MIR 42 162 -100 1482 204 0 32 chr4 192826639 192826924 -9501423 + AluJo SINE Alu 1 276 -36 2256 101 10 3 chr4 192826935 192827241 -9501106 - AluSx SINE Alu -4 308 1 1899 130 3 44 chr4 192827301 192827616 -9500731 - AluJo SINE Alu 0 312 11 21 81 0 14 chr4 192827882 192827916 -9500431 + AT_rich Low_complexity Low_complexity 1 34 -39 7438 51 17 10 chr4 192827916 192829288 -9499059 + L1PA6 LINE L1 4766 6143 -11 21 81 0 14 chr4 192829288 192829327 -9499020 + AT_rich Low_complexity Low_complexity 34 73 0 594 231 24 24 chr4 192829880 192830049 -9498298 + L1MC5 LINE L1 7073 7241 -720 305 150 250 0 chr4 192830081 192830161 -9498186 + L1MC5 LINE L1 7314 7413 -548 2530 61 3 0 chr4 192830207 192830503 -9497844 - AluSp SINE Alu -16 297 1 256 220 186 51 chr4 192830599 192830776 -9497571 + L1ME3A LINE L1 5962 6162 -8 381 247 103 35 chr4 192832484 192832633 -9495714 + MIR SINE MIR 62 219 -43 583 229 69 57 chr4 192832728 192832903 -9495444 + MER5A DNA MER1_type 13 189 0 237 308 47 9 chr4 192834194 192834369 -9493978 - MIR SINE MIR -12 250 23 22 0 0 0 chr4 192835048 192835070 -9493277 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 192835668 192835691 -9492656 + GC_rich Low_complexity Low_complexity 1 23 0 319 195 106 124 chr4 192835747 192835973 -9492374 - L1M2 LINE L1 -5862 987 766 276 308 34 26 chr4 192837952 192838069 -9490278 + MIR SINE MIR 64 181 -81 744 276 111 0 chr4 192838166 192838383 -9489964 - MIR SINE MIR -9 253 13 23 0 0 0 chr4 192838676 192838699 -9489648 + AT_rich Low_complexity Low_complexity 1 23 0 2209 75 27 10 chr4 192839139 192839434 -9488913 - AluSq SINE Alu -11 302 3 2184 103 13 7 chr4 192839441 192839742 -9488605 - AluSc SINE Alu -6 303 1 1555 97 0 23 chr4 192839773 192839989 -9488358 - AluSg/x SINE Alu -17 293 83 2090 114 7 7 chr4 192840715 192841014 -9487333 - AluSg SINE Alu -11 299 1 654 232 33 0 chr4 192841090 192841241 -9487106 + MIR SINE MIR 106 261 -1 1231 183 23 8 chr4 192841385 192841642 -9486705 + L1 LINE L1 4592 4852 -1294 2242 115 3 0 chr4 192841646 192841942 -9486405 - AluSx SINE Alu -15 297 1 6519 200 13 22 chr4 192841946 192843455 -9484892 - L1M4 LINE L1 -813 5333 3839 1273 79 0 24 chr4 192843481 192843646 -9484701 - L1PA10 LINE L1 -2 6166 6006 4437 106 9 11 chr4 192843647 192844288 -9484059 - L1P LINE L1 -3444 2702 2063 255 31 0 0 chr4 192844314 192844346 -9484001 + (TG)n Simple_repeat Simple_repeat 2 33 0 2922 25 0 0 chr4 192844348 192844674 -9483673 - LTR17 LTR ERV1 -454 326 1 2416 70 0 0 chr4 192844674 192844972 -9483375 - HERV17 LTR ERV1 0 8626 8329 260 128 0 0 chr4 192844956 192844995 -9483352 - HERV17 LTR ERV1 -1078 7548 7510 * 6847 64 6 0 chr4 192844984 192845817 -9482530 - HERV17 LTR ERV1 -2603 6023 5186 513 258 73 93 chr4 192845929 192846174 -9482173 + L1M4 LINE L1 3602 3840 -2306 7516 43 3 39 chr4 192846174 192847776 -9480571 + SVA Other Other 2 1390 0 513 258 73 93 chr4 192847776 192847927 -9480420 + L1M4 LINE L1 3839 3992 -2154 201 39 0 0 chr4 192848034 192848060 -9480287 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2101 101 3 52 chr4 192849339 192849647 -9478700 - AluSg SINE Alu -17 293 1 199 340 0 0 chr4 192850599 192850646 -9477701 - L2 LINE L2 -86 3186 3140 592 261 88 40 chr4 192850709 192850958 -9477389 - LTR48B LTR ERV1 0 644 384 986 176 39 24 chr4 192851024 192851264 -9477083 - LTR48 LTR ERV1 -469 238 1 193 322 78 17 chr4 192851268 192851383 -9476964 - L2 LINE L2 -206 3066 2945 1390 118 5 0 chr4 192853011 192853206 -9475141 + MER2 DNA MER2_type 150 345 0 834 156 0 31 chr4 192853277 192853405 -9474942 + FLAM_C SINE Alu 1 124 -19 3047 37 14 0 chr4 192853471 192853820 -9474527 + L1PA5 LINE L1 5799 6152 -2 1925 101 54 0 chr4 192854233 192854491 -9473856 - AluSx SINE Alu -40 272 1 270 106 0 21 chr4 192854989 192855036 -9473311 + MER89 LTR ERV1 2 47 -512 1759 153 65 6 chr4 192855038 192855377 -9472970 + MER89 LTR ERV1 201 559 0 250 292 62 8 chr4 192855886 192856016 -9472331 - MLT1L LTR MaLR -348 267 131 1197 335 37 11 chr4 192856145 192856814 -9471533 + HERV16 LTR ERVL 520 1206 -3790 3054 103 23 5 chr4 192856871 192857309 -9471038 + MER83 LTR ERV1 3 448 0 1176 91 11 0 chr4 192857619 192857794 -9470553 + L1MA2 LINE L1 6128 6304 0 1743 119 98 4 chr4 192858530 192858807 -9469540 - AluJb SINE Alu -6 306 4 940 187 53 53 chr4 192859290 192859552 -9468795 + MLT2A2 LTR ERVL 1 262 -191 1826 156 3 3 chr4 192859761 192860044 -9468303 - AluJb SINE Alu -29 283 1 292 221 47 12 chr4 192860150 192860236 -9468111 + MER117 DNA MER1_type 1 89 -108 26 64 0 0 chr4 192860408 192860455 -9467892 + AT_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr4 192860663 192860686 -9467661 + AT_rich Low_complexity Low_complexity 1 23 0 368 276 60 76 chr4 192861441 192861742 -9466605 + L2 LINE L2 3014 3309 -4 1247 205 65 57 chr4 192862066 192862452 -9465895 + MLT1B LTR MaLR 1 389 -1 475 242 242 6 chr4 192862549 192862727 -9465620 - MIR SINE MIR -25 237 18 382 315 16 49 chr4 192863096 192863280 -9465067 - MER5A DNA MER1_type 0 189 12 319 145 177 105 chr4 192863379 192863457 -9464890 - L2 LINE L2 0 3313 3221 2050 133 3 10 chr4 192863457 192863765 -9464582 + AluSx SINE Alu 1 306 -6 319 145 177 105 chr4 192863765 192863810 -9464537 - L2 LINE L2 -92 3221 3181 354 268 79 16 chr4 192863866 192863993 -9464354 - MLT1I LTR MaLR 0 409 275 988 226 100 25 chr4 192863995 192864314 -9464033 - L2 LINE L2 -805 2509 2167 963 244 4 9 chr4 192864934 192865159 -9463188 - MER58A DNA MER1_type 0 224 1 502 317 30 33 chr4 192865388 192865688 -9462659 + L1MEd LINE L1 869 1167 -5363 1861 184 7 0 chr4 192865770 192866063 -9462284 + AluJb SINE Alu 1 295 -17 3363 107 100 47 chr4 192866100 192866726 -9461621 + Tigger3(Golem) DNA MER2_type 2281 2951 -77 1450 123 50 0 chr4 192866726 192866945 -9461402 + MER30 DNA MER1_type 1 230 0 3363 107 100 47 chr4 192866945 192867028 -9461319 + Tigger3(Golem) DNA MER2_type 2951 3028 0 533 281 60 81 chr4 192867094 192867922 -9460425 + L1MEd LINE L1 1306 2122 -4599 22 0 0 0 chr4 192868008 192868030 -9460317 + AT_rich Low_complexity Low_complexity 1 22 0 349 310 35 0 chr4 192868235 192868348 -9459999 + L1MEd LINE L1 2465 2581 -3959 2008 93 52 10 chr4 192868350 192868640 -9459707 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr4 192868656 192868677 -9459670 + AT_rich Low_complexity Low_complexity 1 21 0 323 299 66 5 chr4 192868727 192868938 -9459409 + L1MEd LINE L1 2714 2937 -3603 700 243 103 49 chr4 192869043 192869410 -9458937 + L1MEd LINE L1 3268 3654 -2886 406 285 97 33 chr4 192869467 192869774 -9458573 + L1MEd LINE L1 3743 4078 -2462 2320 106 0 0 chr4 192869774 192870076 -9458271 + AluSg SINE Alu 1 302 -8 406 285 97 33 chr4 192870076 192870129 -9458218 + L1MEd LINE L1 4078 4126 -2414 249 242 30 0 chr4 192870167 192870233 -9458114 + HsTC2 DNA Tc2 36 103 -1795 732 218 0 35 chr4 192870252 192870422 -9457925 + FRAM SINE Alu 3 166 0 404 231 20 14 chr4 192870430 192870577 -9457770 + A-rich Low_complexity Low_complexity 3 150 0 813 254 82 49 chr4 192870696 192870816 -9457531 + L1MEd LINE L1 4197 4312 -2228 2687 26 0 0 chr4 192870816 192871122 -9457225 + AluY SINE Alu 1 306 -5 813 254 82 49 chr4 192871122 192871406 -9456941 + L1MEd LINE L1 4312 4614 -1926 368 292 54 63 chr4 192871468 192872136 -9456211 + L1MEd LINE L1 5135 5796 -744 1185 211 50 62 chr4 192872158 192872576 -9455771 - L1M4 LINE L1 -978 5168 4756 753 138 8 8 chr4 192872577 192872707 -9455640 + MLT2D LTR ERVL 2 131 -283 251 246 49 0 chr4 192872807 192872868 -9455479 + L2 LINE L2 3209 3272 0 * 403 312 83 12 chr4 192872849 192873050 -9455297 + MIR SINE MIR 8 223 -39 23 0 0 0 chr4 192873183 192873206 -9455141 + AT_rich Low_complexity Low_complexity 1 23 0 2356 68 14 0 chr4 192873219 192873512 -9454835 + AluY SINE Alu 1 297 -14 864 298 144 46 chr4 192873950 192874142 -9454205 - L3 LINE CR1 -129 1448 1276 382 288 32 0 chr4 192874142 192874267 -9454080 - MER94 DNA DNA -3 131 3 864 298 144 46 chr4 192874267 192874574 -9453773 - L3 LINE CR1 -301 1276 900 214 328 185 25 chr4 192874606 192874725 -9453622 - L3 LINE CR1 -1028 549 412 266 268 60 113 chr4 192874821 192874989 -9453358 - L2 LINE L2 0 3313 3155 264 182 0 0 chr4 192875049 192875093 -9453254 - Alu SINE Alu -15 287 244 27653 48 1 0 chr4 192875193 192878638 -9449709 - HERV17 LTR ERV1 -3535 5091 1644 4846 208 17 45 chr4 192878648 192880146 -9448201 - L1P3 LINE L1 -4112 2349 882 5293 157 22 51 chr4 192880159 192880817 -9447530 - L1M4c LINE L1 -3453 2929 2253 1834 174 14 0 chr4 192880817 192881110 -9447237 - AluJb SINE Alu -15 297 1 5293 157 22 51 chr4 192881110 192881156 -9447191 - L1M4c LINE L1 -4129 2253 2207 1584 204 0 17 chr4 192881156 192881482 -9446865 - AluJo SINE Alu 0 312 1 5293 157 22 51 chr4 192881482 192881755 -9446592 - L1M4c LINE L1 -4175 2207 1928 2387 88 0 0 chr4 192881755 192882052 -9446295 + AluY SINE Alu 1 297 -14 5293 157 22 51 chr4 192882052 192882609 -9445738 - L1M4c LINE L1 -4454 1928 1446 2478 152 35 5 chr4 192882610 192883043 -9445304 - Tigger2 DNA MER2_type 0 2718 2273 389 159 0 29 chr4 192883033 192883102 -9445245 - Tigger2 DNA MER2_type -2649 69 3 * 6527 172 57 13 chr4 192883104 192883443 -9444904 - L1M4c LINE L1 -4954 1430 1107 1526 100 45 0 chr4 192883443 192883663 -9444684 + MER30 DNA MER1_type 1 230 0 6527 172 57 13 chr4 192883663 192884689 -9443658 - L1M4c LINE L1 -5277 1107 5 1370 127 20 28 chr4 192884675 192884928 -9443419 - L1MB3 LINE L1 -356 5827 5577 * 3632 34 9 0 chr4 192885397 192885833 -9442514 - L1PA5 LINE L1 0 6154 5715 205 370 102 0 chr4 192885837 192885964 -9442383 + MIR3 SINE MIR 61 200 -8 2247 102 13 0 chr4 192886034 192886338 -9442009 + AluSq SINE Alu 1 308 -5 1676 156 30 43 chr4 192886355 192886657 -9441690 + AluJo SINE Alu 1 298 -14 1993 118 0 0 chr4 192887080 192887343 -9441004 - AluSg SINE Alu -47 263 1 483 114 0 0 chr4 192887343 192887413 -9440934 - FLAM_A SINE Alu -10 132 63 1247 212 59 41 chr4 192887648 192888091 -9440256 - L1MA9 LINE L1 -38 6274 5821 1721 140 50 29 chr4 192888365 192888675 -9439672 + AluJo SINE Alu 1 316 0 681 181 28 77 chr4 192889301 192889483 -9438864 - MER96 DNA MER1_type -2 173 1 232 305 0 12 chr4 192889856 192889938 -9438409 - Tigger8 DNA MER2_type -204 462 382 1988 74 0 4 chr4 192890564 192890806 -9437541 + AluSg SINE Alu 52 292 -18 252 86 0 0 chr4 192890814 192890849 -9437498 + AluSp SINE Alu 136 170 -133 354 278 82 62 chr4 192890850 192891156 -9437191 + L1MC/D LINE L1 3081 3392 -2754 285 285 38 39 chr4 192891306 192891577 -9436770 + L1MC/D LINE L1 3509 3778 -2368 28 0 0 0 chr4 192891587 192891615 -9436732 + AT_rich Low_complexity Low_complexity 1 28 0 288 0 0 0 chr4 192891967 192891999 -9436348 + (CA)n Simple_repeat Simple_repeat 2 33 0 864 288 81 26 chr4 192892014 192892548 -9435799 - L1ME3 LINE L1 -281 5881 5319 2064 131 10 0 chr4 192892583 192892880 -9435467 + AluSx SINE Alu 1 300 -12 287 277 0 45 chr4 192893086 192893198 -9435149 - L1ME3 LINE L1 -1159 4987 4881 521 256 69 55 chr4 192893203 192893317 -9435030 + L1MC/D LINE L1 5255 5366 -2442 2381 84 0 0 chr4 192893317 192893616 -9434731 + AluY SINE Alu 1 299 -12 521 256 69 55 chr4 192893616 192893864 -9434483 + L1MC/D LINE L1 5366 5622 -2186 1369 145 4 33 chr4 192893872 192894113 -9434234 + MER46A DNA MER2_type 2 235 -1 1660 129 90 25 chr4 192894182 192894461 -9433886 - AluJb SINE Alu -15 297 1 632 206 61 0 chr4 192894489 192894620 -9433727 + AluJb SINE Alu 137 275 -37 26 0 0 0 chr4 192894706 192894732 -9433615 + AT_rich Low_complexity Low_complexity 1 26 0 2154 88 3 42 chr4 192897304 192897611 -9430736 + AluSg SINE Alu 1 295 -15 766 118 7 83 chr4 192897632 192897776 -9430571 + FLAM_C SINE Alu 1 133 0 2465 84 7 0 chr4 192897880 192898188 -9430159 + AluSx SINE Alu 1 310 -2 484 259 96 7 chr4 192898851 192898986 -9429361 + MIR SINE MIR 17 163 -99 397 221 179 0 chr4 192898991 192899086 -9429261 - L2 LINE L2 -1 3271 3160 2673 140 62 0 chr4 192899186 192899993 -9428354 + L1P4 LINE L1 4777 5619 -546 2715 95 19 3 chr4 192900500 192900869 -9427478 - THE1C LTR MaLR 0 375 1 248 250 56 0 chr4 192901076 192901148 -9427199 - L1ME3A LINE L1 -90 6080 6005 233 293 0 0 chr4 192901356 192901414 -9426933 - MER5A DNA MER1_type -1 188 131 1381 172 34 22 chr4 192901418 192901760 -9426587 - L1MA9 LINE L1 -169 5962 5790 379 162 29 0 chr4 192901782 192901872 -9426475 + L1MA9 LINE L1 6169 6279 -20 412 259 78 89 chr4 192901899 192902350 -9425997 - L1MDa LINE L1 -1703 4837 4392 367 257 0 19 chr4 192902355 192902460 -9425887 + L1M4 LINE L1 3132 3234 -2912 425 197 174 72 chr4 192902464 192902687 -9425660 - L1MDa LINE L1 -2137 4403 4204 261 0 0 0 chr4 192902687 192902716 -9425631 + (TG)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr4 192902715 192902735 -9425612 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 425 197 174 72 chr4 192902716 192902738 -9425609 - L1MDa LINE L1 -2336 4204 4186 2618 58 0 3 chr4 192902738 192903050 -9425297 - AluY SINE Alu 0 311 1 425 197 174 72 chr4 192903050 192903086 -9425261 - L1MDa LINE L1 -2354 4186 4113 2033 133 3 10 chr4 192903207 192903515 -9424832 - AluSg SINE Alu -4 306 1 2414 133 21 0 chr4 192903576 192903958 -9424389 - MLT1B LTR MaLR 0 390 1 1121 280 96 27 chr4 192903960 192904897 -9423450 - L1MDa LINE L1 -2743 3797 2796 500 247 80 78 chr4 192904912 192904984 -9423363 - L1MDa LINE L1 -3890 2650 2580 1702 197 0 27 chr4 192904984 192905283 -9423064 - AluJo SINE Alu -21 291 1 500 247 80 78 chr4 192905283 192905474 -9422873 - L1MDa LINE L1 -3960 2580 2477 2278 113 10 0 chr4 192905474 192905783 -9422564 - AluSx SINE Alu 0 312 1 500 247 80 78 chr4 192905783 192905828 -9422519 - L1MDa LINE L1 -4063 2477 2434 848 275 98 37 chr4 192906056 192906804 -9421543 - L1MDa LINE L1 -4579 2142 1350 2876 209 56 63 chr4 192906813 192907900 -9420447 - L1ME LINE L1 -589 5575 4499 276 156 0 22 chr4 192907900 192907945 -9420402 - Alu SINE Alu -24 278 235 13817 179 34 10 chr4 192907947 192909667 -9418680 - L1PBa LINE L1 -1209 5653 3975 180 0 0 0 chr4 192909667 192909687 -9418660 + (TTG)n Simple_repeat Simple_repeat 2 21 0 13817 179 34 10 chr4 192909687 192910670 -9417677 - L1PBa LINE L1 -2887 3975 3017 2150 146 0 0 chr4 192910670 192910971 -9417376 - AluSx SINE Alu -11 301 1 13817 179 34 10 chr4 192910971 192912020 -9416327 - L1PBa LINE L1 -3845 3017 1789 743 119 0 63 chr4 192912935 192913061 -9415286 + FRAM SINE Alu 45 162 -14 2248 138 12 75 chr4 192914094 192914394 -9413953 - MLT1B LTR MaLR -2 388 120 2138 115 14 0 chr4 192914394 192914682 -9413665 - AluSx SINE Alu -18 294 3 2248 138 12 75 chr4 192914682 192914795 -9413552 - MLT1B LTR MaLR -270 120 1 716 235 28 28 chr4 192914870 192915049 -9413298 - MIR SINE MIR -21 241 63 1945 127 24 3 chr4 192915403 192915694 -9412653 + AluJo SINE Alu 1 297 -15 2348 90 13 7 chr4 192915743 192916053 -9412294 - AluSx SINE Alu 0 312 1 222 192 0 0 chr4 192916208 192916260 -9412087 + (CA)n Simple_repeat Simple_repeat 2 53 0 2478 50 7 3 chr4 192917005 192917305 -9411042 - AluY SINE Alu -10 301 1 2265 103 0 0 chr4 192917312 192917604 -9410743 - AluSx SINE Alu -20 292 1 302 317 92 24 chr4 192917785 192917949 -9410398 - MIR SINE MIR -81 181 7 2207 102 3 7 chr4 192919659 192919953 -9408394 - AluY SINE Alu -18 293 1 846 212 18 12 chr4 192920112 192920277 -9408070 + FRAM SINE Alu 1 166 0 1665 131 99 28 chr4 192920374 192920657 -9407690 + AluJo SINE Alu 1 303 -9 314 130 0 0 chr4 192920657 192920703 -9407644 + Alu SINE Alu 2 47 -256 1664 82 0 0 chr4 192920706 192920912 -9407435 + AluSg/x SINE Alu 89 294 -16 2256 195 124 2 chr4 192920952 192921469 -9406878 - L1MD3 LINE L1 -10 7985 7406 2269 105 0 0 chr4 192921475 192921770 -9406577 - AluSq SINE Alu -18 295 1 382 261 11 11 chr4 192921772 192921860 -9406487 - MLT1F1 LTR MaLR -445 122 35 238 175 330 21 chr4 192921860 192921908 -9406439 - L1MD3 LINE L1 -879 7116 7084 192 77 0 0 chr4 192921908 192921934 -9406413 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 238 175 330 21 chr4 192921934 192921982 -9406365 - L1MD3 LINE L1 -911 7084 6990 2120 171 36 28 chr4 192921982 192922531 -9405816 + MLT2A2 LTR ERVL 1 554 0 1572 213 41 74 chr4 192922531 192923028 -9405319 - L1MC3 LINE L1 -812 6973 6494 2320 33 65 0 chr4 192923028 192923303 -9405044 - AluY SINE Alu -18 293 1 1572 213 41 74 chr4 192923303 192923346 -9405001 - L1MC3 LINE L1 -1291 6494 6451 874 273 13 4 chr4 192923462 192923693 -9404654 + MIR SINE MIR 15 247 -15 28 48 0 0 chr4 192923788 192923830 -9404517 + AT_rich Low_complexity Low_complexity 1 42 0 1660 169 19 16 chr4 192923830 192923959 -9404388 + AluJb SINE Alu 1 128 -184 186 43 0 0 chr4 192923959 192923982 -9404365 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1660 169 19 16 chr4 192923982 192924160 -9404187 + AluJb SINE Alu 128 309 -3 2276 88 3 0 chr4 192924558 192924889 -9403458 - AluSg SINE Alu 0 332 1 879 152 8 0 chr4 192924892 192925024 -9403323 - AluJo/FLAM SINE Alu -169 133 1 1816 180 0 3 chr4 192925035 192925341 -9403006 - AluJb SINE Alu -7 305 1 502 219 37 0 chr4 192925528 192925654 -9402693 + L1ME LINE L1 5502 5634 -487 471 307 47 13 chr4 192925665 192925815 -9402532 + MER5A DNA MER1_type 7 161 -28 1806 189 10 0 chr4 192925815 192926122 -9402225 + AluJo SINE Alu 1 310 -2 1201 172 38 29 chr4 192926209 192926289 -9402058 - AluJo SINE Alu -101 211 133 2388 56 0 7 chr4 192926289 192926615 -9401732 - AluY SINE Alu 0 324 1 1201 172 38 29 chr4 192926615 192926742 -9401605 - AluJo SINE Alu -179 133 1 1164 193 118 26 chr4 192926742 192927053 -9401294 - MSTD LTR MaLR -43 353 1 3289 229 74 74 chr4 192927428 192927514 -9400833 + L1MC4 LINE L1 6445 6529 -1513 2425 139 31 17 chr4 192927514 192927873 -9400474 - THE1B LTR MaLR 0 364 1 3289 229 74 74 chr4 192927873 192928267 -9400080 + L1MC4 LINE L1 6529 6921 -1121 1066 176 30 0 chr4 192928267 192928466 -9399881 + L1MB3 LINE L1 5972 6176 -7 3289 229 74 74 chr4 192928466 192928523 -9399824 + L1MC4 LINE L1 6921 6976 -1066 1848 190 46 30 chr4 192928523 192928891 -9399456 + MLT1A2 LTR MaLR 1 374 0 3289 229 74 74 chr4 192928891 192928903 -9399444 + L1MC4 LINE L1 6976 6986 -1056 2136 127 0 0 chr4 192928903 192929195 -9399152 - AluSx SINE Alu -18 294 3 3289 229 74 74 chr4 192929195 192929845 -9398502 + L1MC4 LINE L1 6986 7634 -408 2073 143 143 19 chr4 192929845 192930223 -9398124 - MSTA LTR MaLR 0 428 4 3289 229 74 74 chr4 192930223 192930294 -9398053 + L1MC4 LINE L1 7634 7703 -339 2259 99 3 3 chr4 192930294 192930586 -9397761 + AluSx SINE Alu 1 292 -20 3289 229 74 74 chr4 192930586 192930828 -9397519 + L1MC4 LINE L1 7703 8042 0 2024 136 3 0 chr4 192930891 192931199 -9397148 - AluSx SINE Alu -3 309 1 843 98 7 85 chr4 192931325 192931478 -9396869 + FLAM_C SINE Alu 1 141 -2 2346 122 0 0 chr4 192931832 192932144 -9396203 - AluSx SINE Alu 0 312 1 194 299 37 75 chr4 192932808 192932995 -9395352 + L2 LINE L2 2485 2664 -650 593 229 136 31 chr4 192933315 192933573 -9394774 - L1MC4a LINE L1 -1913 5895 5611 306 0 0 0 chr4 192933573 192933607 -9394740 + (TG)n Simple_repeat Simple_repeat 2 35 0 892 167 56 0 chr4 192933620 192933764 -9394583 - FAM SINE Alu -18 167 16 2303 92 3 3 chr4 192933772 192934078 -9394269 - AluSq SINE Alu -7 306 1 11173 116 24 62 chr4 192936183 192936558 -9391789 + Tigger2 DNA MER2_type 638 1026 -1692 2235 118 0 0 chr4 192936558 192936863 -9391484 + AluSx SINE Alu 1 305 -7 11173 116 24 62 chr4 192936863 192937034 -9391313 + Tigger2 DNA MER2_type 1026 1202 -1516 1812 146 16 29 chr4 192937034 192937350 -9390997 - AluSx SINE Alu 0 312 1 11173 116 24 62 chr4 192937350 192938189 -9390158 + Tigger2 DNA MER2_type 1202 1933 -785 1957 91 11 29 chr4 192938189 192938463 -9389884 - AluSx SINE Alu -6 306 38 11173 116 24 62 chr4 192938463 192938989 -9389358 + Tigger2 DNA MER2_type 1933 2478 -240 6353 142 3 19 chr4 192939006 192940051 -9388296 - L1MA4 LINE L1 -15 6285 5258 2125 92 39 3 chr4 192940065 192940349 -9387998 + AluSc SINE Alu 1 294 -15 273 194 28 56 chr4 192940440 192940512 -9387835 + L1MA9 LINE L1 6167 6236 -76 2118 139 0 0 chr4 192940520 192940821 -9387526 - AluSx SINE Alu -11 301 1 376 269 90 45 chr4 192941229 192941430 -9386917 - L1ME3A LINE L1 -208 5962 5753 242 28 0 28 chr4 192941787 192941823 -9386524 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2342 68 0 0 chr4 192941848 192942128 -9386219 - AluSp SINE Alu -33 280 1 1604 147 6 64 chr4 192942219 192942545 -9385802 - L1MB3 LINE L1 0 6183 5877 2238 87 4 0 chr4 192942868 192943187 -9385160 - AluSx SINE Alu 0 325 6 253 283 0 33 chr4 192943412 192943504 -9384843 - L1ME3 LINE L1 -196 5966 5878 * 4569 167 45 50 chr4 192943502 192943913 -9384434 - L1MB3 LINE L1 0 6183 5771 2308 92 16 0 chr4 192943913 192944219 -9384128 - AluSp SINE Alu -2 311 1 1911 160 0 3 chr4 192944223 192944535 -9383812 - AluJb SINE Alu -1 311 1 4569 167 45 50 chr4 192944535 192944904 -9383443 - L1MB3 LINE L1 -415 5768 5399 1092 194 0 0 chr4 192944904 192945079 -9383268 - FAM SINE Alu 0 175 1 4569 167 45 50 chr4 192945079 192945848 -9382499 - L1MB3 LINE L1 -784 5399 4641 631 239 141 15 chr4 192945915 192946178 -9382169 - L1ME3 LINE L1 -365 5805 5510 1728 198 99 8 chr4 192946195 192946558 -9381789 + MSTD LTR MaLR 1 396 0 384 291 0 17 chr4 192946569 192946686 -9381661 + L1ME LINE L1 5708 5822 -299 788 250 30 68 chr4 192946687 192946855 -9381492 - MIR SINE MIR 0 262 104 2255 93 0 3 chr4 192946855 192947146 -9381201 + AluSg SINE Alu 5 294 -16 788 250 30 68 chr4 192947146 192947213 -9381134 - MIR SINE MIR -158 104 36 193 289 143 41 chr4 192947604 192947946 -9380401 + L2 LINE L2 1331 1707 -1607 2859 184 30 32 chr4 192948307 192948668 -9379679 + MER74A LTR ERVL 1 362 -196 2485 74 0 3 chr4 192948668 192948977 -9379370 + AluSc SINE Alu 1 308 -1 2859 184 30 32 chr4 192948977 192949174 -9379173 + MER74A LTR ERVL 362 558 0 1537 184 69 94 chr4 192949252 192949415 -9378932 + MLT1C LTR MaLR 1 167 -300 927 141 0 15 chr4 192949415 192949550 -9378797 + FLAM_C SINE Alu 1 133 0 1537 184 69 94 chr4 192949550 192949865 -9378482 + MLT1C LTR MaLR 167 467 0 2278 136 17 75 chr4 192949900 192950076 -9378271 + MLT1B LTR MaLR 3 188 -202 2322 84 0 0 chr4 192950076 192950360 -9377987 + AluSc SINE Alu 1 284 -25 2278 136 17 75 chr4 192950360 192950595 -9377752 + MLT1B LTR MaLR 188 390 0 2195 116 0 0 chr4 192950657 192950950 -9377397 + AluSg SINE Alu 1 293 -17 816 163 39 0 chr4 192951055 192951184 -9377163 + AluJo SINE Alu 2 135 -177 463 296 99 17 chr4 192951185 192951596 -9376751 + L1MEc LINE L1 1196 1650 -857 21 0 0 0 chr4 192951885 192951906 -9376441 + AT_rich Low_complexity Low_complexity 1 21 0 329 370 59 34 chr4 192952051 192952405 -9375942 + L1MC4 LINE L1 398 760 -5359 900 240 46 62 chr4 192952412 192952813 -9375534 - LTR16B LTR ERVL -13 451 2 435 305 70 35 chr4 192952939 192953198 -9375149 - HERVL LTR ERVL -327 5327 5060 442 351 32 5 chr4 192953404 192953592 -9374755 - HERV16 LTR ERVL -4800 196 4 903 264 41 34 chr4 192953595 192953890 -9374457 - LTR16B LTR ERVL 0 464 168 833 159 0 0 chr4 192953891 192954017 -9374330 + AluJo SINE Alu 5 130 -172 2325 121 139 16 chr4 192954036 192954417 -9373930 - MSTA LTR MaLR 0 428 1 620 204 183 14 chr4 192954417 192954559 -9373788 + AluJo SINE Alu 137 302 0 1803 168 30 3 chr4 192954646 192954761 -9373586 + AluJo SINE Alu 1 112 -200 255 31 0 0 chr4 192954761 192954793 -9373554 + (CA)n Simple_repeat Simple_repeat 1 32 0 1803 168 30 3 chr4 192954793 192954981 -9373366 + AluJo SINE Alu 112 312 0 738 268 88 62 chr4 192954997 192955816 -9372531 + L1MC4 LINE L1 879 1737 -4573 455 225 8 92 chr4 192955865 192955985 -9372362 + L1MC4 LINE L1 5519 5628 -2163 2033 140 3 13 chr4 192956821 192957135 -9371212 - AluSx SINE Alu 0 312 2 601 269 44 87 chr4 192957550 192957800 -9370547 + L1MC4 LINE L1 7258 7517 -508 1624 155 52 14 chr4 192957800 192958090 -9370257 + AluJo SINE Alu 1 301 -11 601 269 44 87 chr4 192958090 192958148 -9370199 + L1MC4 LINE L1 7517 7576 -449 1759 126 108 0 chr4 192958148 192958426 -9369921 - AluSx SINE Alu -4 308 1 601 269 44 87 chr4 192958426 192958776 -9369571 + L1MC4 LINE L1 7576 8008 -17 21 36 0 0 chr4 192958779 192958807 -9369540 + AT_rich Low_complexity Low_complexity 1 28 0 1871 169 0 3 chr4 192958952 192959247 -9369100 - AluJb SINE Alu -17 295 2 894 323 71 21 chr4 192959264 192959777 -9368570 + HERVL LTR ERVL 2144 2720 -3004 1570 159 6 108 chr4 192960298 192960477 -9367870 - AluJo SINE Alu -3 299 168 2050 126 7 3 chr4 192960477 192960771 -9367576 - AluSx SINE Alu -16 296 2 1570 159 6 108 chr4 192960771 192960924 -9367423 - AluJo SINE Alu -134 168 1 2339 98 0 0 chr4 192962272 192962568 -9365779 - AluSx SINE Alu -16 296 1 225 313 88 12 chr4 192964186 192964266 -9364081 - L2 LINE L2 -1 3271 3186 182 167 56 0 chr4 192964263 192964299 -9364048 + L2 LINE L2 3273 3310 -3 * 3402 182 28 8 chr4 192964309 192964919 -9363428 + Tigger7 DNA MER2_type 11 632 -101 2230 102 3 3 chr4 192965058 192965351 -9362996 - AluSx SINE Alu -19 293 1 1379 143 13 10 chr4 192965426 192965690 -9362657 + Tigger3(Golem) DNA MER2_type 7 2936 -93 * 3083 167 0 4 chr4 192965682 192966179 -9362168 + Tigger7 DNA MER2_type 603 1097 -1390 231 0 0 0 chr4 192966180 192966210 -9362137 + L1MA3 LINE L1 6276 6305 0 7820 139 26 64 chr4 192966239 192967682 -9360665 + Tigger7 DNA MER2_type 1099 2487 0 686 233 50 74 chr4 192967921 192968179 -9360168 - MIR SINE MIR 0 262 11 656 240 20 69 chr4 192968285 192968332 -9360015 + MIR SINE MIR 42 90 -172 2187 113 0 0 chr4 192968332 192968649 -9359698 + AluSx SINE Alu 1 317 0 656 240 20 69 chr4 192968649 192968804 -9359543 + MIR SINE MIR 90 235 -27 2072 79 7 10 chr4 193019746 193020036 -9308311 - AluSp SINE Alu -23 290 2 21 0 0 0 chr4 193020254 193020275 -9308072 + GC_rich Low_complexity Low_complexity 1 21 0 2093 103 6 35 chr4 193020894 193021213 -9307134 - AluSx SINE Alu -2 310 1 25 0 0 0 chr4 193021492 193021517 -9306830 + AT_rich Low_complexity Low_complexity 1 25 0 994 119 10 72 chr4 193021650 193021843 -9306504 - AluJo SINE Alu -12 300 120 832 147 7 0 chr4 193021851 193021987 -9306360 - FLAM_C SINE Alu -1 142 6 366 344 76 63 chr4 193023727 193023901 -9304446 - L3 LINE CR1 -8 1569 1387 1640 119 78 34 chr4 193023901 193024198 -9304149 - AluSx SINE Alu 0 309 1 366 344 76 63 chr4 193024198 193024339 -9304008 - L3 LINE CR1 -190 1387 1249 185 240 20 20 chr4 193024418 193024468 -9303879 - L3 LINE CR1 -664 913 864 229 280 130 29 chr4 193024492 193024842 -9303505 - L1ME3A LINE L1 -74 6096 5678 1038 72 0 0 chr4 193024979 193025117 -9303230 + AluY SINE Alu 161 298 -13 334 262 79 40 chr4 193025386 193025512 -9302835 - Charlie8 DNA MER1_type -2286 131 1 205 297 188 0 chr4 193025696 193025824 -9302523 - MIR SINE MIR -51 211 60 249 274 186 34 chr4 193026290 193026494 -9301853 - MLT1L LTR MaLR -215 400 166 820 154 7 0 chr4 193026738 193026874 -9301473 + FLAM_C SINE Alu 6 142 -1 849 125 0 83 chr4 193026882 193027050 -9301297 + AluJo SINE Alu 120 273 -39 239 213 0 21 chr4 193027476 193027523 -9300824 + polypyrimidine Low_complexity Low_complexity 3 48 0 2016 139 0 0 chr4 193028554 193028857 -9299490 + AluJo SINE Alu 1 303 -9 199 291 132 8 chr4 193028926 193029059 -9299288 + MIR SINE MIR 25 173 -60 448 357 25 38 chr4 193029071 193029309 -9299038 - L2 LINE L2 -2 3270 3036 194 105 26 0 chr4 193029382 193029420 -9298927 + G-rich Low_complexity Low_complexity 4 42 0 337 222 141 30 chr4 193029832 193029967 -9298380 + MLT1F1 LTR MaLR 371 520 -47 2333 82 3 0 chr4 193030473 193030776 -9297571 + AluSx SINE Alu 1 304 -8 4738 180 24 9 chr4 193030800 193031845 -9296502 - L1MB8 LINE L1 -6 6172 5110 23 33 0 0 chr4 193031903 193031933 -9296414 + AT_rich Low_complexity Low_complexity 1 30 0 351 304 90 48 chr4 193032177 193032512 -9295835 + L1MC4a LINE L1 5582 5930 -1878 1992 97 38 0 chr4 193032536 193032826 -9295521 - AluSx SINE Alu -11 301 1 1331 140 69 111 chr4 193033287 193033665 -9294682 - MLT1A1 LTR MaLR -3 362 1 2033 116 10 0 chr4 193033667 193033960 -9294387 - AluSx SINE Alu -16 296 1 1438 225 45 47 chr4 193034018 193034400 -9293947 - MLT1B LTR MaLR -8 382 2 1618 187 0 3 chr4 193035326 193035625 -9292722 - AluJb SINE Alu -14 298 1 3093 249 83 20 chr4 193036052 193036531 -9291816 - MER69 DNA AcHobo -1527 999 552 3825 138 34 11 chr4 193036531 193037152 -9291195 - MER41B LTR ERV1 0 635 1 3093 249 83 20 chr4 193037152 193037612 -9290735 - MER69 DNA AcHobo -1974 552 1 2437 166 22 84 chr4 193038064 193038613 -9289734 - MLT2B2 LTR ERVL 0 515 1 2234 85 0 7 chr4 193038919 193039224 -9289123 + AluY SINE Alu 1 303 -8 343 319 251 3 chr4 193040715 193041022 -9287325 + L2 LINE L2 2890 3272 0 630 283 164 35 chr4 193046241 193046559 -9281788 - L2 LINE L2 0 3313 2955 1980 118 3 0 chr4 193046739 193047027 -9281320 + AluSx SINE Alu 4 292 -20 296 212 3 32 chr4 193048288 193048365 -9279982 + MER5B DNA MER1_type 113 177 -1 377 273 83 8 chr4 193050096 193050228 -9278119 + L2 LINE L2 2920 3061 -252 2179 100 3 0 chr4 193050569 193050880 -9277467 - AluSx SINE Alu 0 312 1 521 313 98 88 chr4 193050952 193051393 -9276954 - L2 LINE L2 -1 3271 2827 920 319 114 6 chr4 193051588 193052086 -9276261 - L2 LINE L2 -774 2540 1989 872 101 0 7 chr4 193052671 193052810 -9275537 + (CATAA)n Simple_repeat Simple_repeat 5 142 0 337 314 37 26 chr4 193052810 193052992 -9275355 - MIR SINE MIR -7 255 69 678 157 0 95 chr4 193053288 193053435 -9274912 + FLAM_C SINE Alu 1 133 0 1173 176 25 21 chr4 193053458 193053697 -9274650 + AluJo SINE Alu 56 295 -17 315 178 41 27 chr4 193053786 193053859 -9274488 + L1M4 LINE L1 5325 5398 -748 468 0 0 0 chr4 193053860 193053912 -9274435 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 1690 138 45 0 chr4 193053912 193054181 -9274166 - AluSx SINE Alu -31 281 1 502 309 0 0 chr4 193054211 193054350 -9273997 - L1MC4 LINE L1 -1433 6609 6471 2024 117 0 0 chr4 193054633 193054948 -9273399 + AluSg SINE Alu 1 315 0 428 266 101 6 chr4 193054957 193055115 -9273232 - L1ME LINE L1 -486 5635 5463 317 290 130 19 chr4 193055746 193055908 -9272439 - MIR SINE MIR -58 204 25 1764 103 0 4 chr4 193056801 193057043 -9271304 - AluSx SINE Alu -14 298 58 523 120 0 0 chr4 193057055 193057130 -9271217 - AluSx SINE Alu -238 75 1 391 251 45 61 chr4 193058956 193059172 -9269175 - MIR SINE MIR -50 212 6 2179 139 14 3 chr4 193060758 193061102 -9267245 + MER7A DNA MER2_type 1 346 0 258 105 0 0 chr4 193063109 193063147 -9265200 + (TG)n Simple_repeat Simple_repeat 2 39 0 327 264 86 43 chr4 193063211 193063374 -9264973 + MIR SINE MIR 91 260 -2 742 164 164 7 chr4 193063968 193064114 -9264233 + AluJb SINE Alu 128 296 -16 410 226 65 65 chr4 193069525 193069693 -9258654 - MIR SINE MIR -34 228 61 2357 91 0 0 chr4 193070204 193070491 -9257856 + AluSx SINE Alu 1 287 -25 340 262 19 19 chr4 193071821 193071924 -9256423 - L2 LINE L2 0 3272 3170 1750 211 68 25 chr4 193072039 193072526 -9255821 + Charlie4a DNA MER1_type 1 508 0 917 151 6 0 chr4 193072949 193073115 -9255232 + (TGGA)n Simple_repeat Simple_repeat 4 170 0 459 266 131 15 chr4 193073689 193073888 -9254459 - MIR SINE MIR -12 250 29 378 271 59 0 chr4 193074789 193074907 -9253440 + L2 LINE L2 3186 3310 -3 527 278 139 17 chr4 193076053 193076283 -9252064 + MIR SINE MIR 5 262 0 2025 160 16 85 chr4 193076293 193076643 -9251704 + MSTD LTR MaLR 1 319 -77 710 136 0 0 chr4 193076643 193076746 -9251601 - U13 snRNA snRNA -1 103 1 2025 160 16 85 chr4 193076746 193076819 -9251528 + MSTD LTR MaLR 319 395 -1 929 185 147 0 chr4 193078124 193078335 -9250012 - MER63 DNA MER1_type -4 1057 816 1596 180 27 48 chr4 193078337 193078435 -9249912 + MER7A DNA MER2_type 4 103 -2935 2484 96 0 6 chr4 193078435 193078749 -9249598 - AluSx SINE Alu 0 312 1 1596 180 27 48 chr4 193078749 193078984 -9249363 + MER7A DNA MER2_type 103 328 -18 740 171 70 38 chr4 193079006 193079164 -9249183 - MER63A DNA MER1_type -42 168 6 2330 106 48 31 chr4 193079301 193079659 -9248688 - THE1B LTR MaLR 0 364 1 580 252 44 18 chr4 193079659 193079883 -9248464 + MIR SINE MIR 33 262 0 344 210 167 29 chr4 193079943 193080081 -9248266 - L1ME4a LINE L1 0 6121 5965 808 116 54 0 chr4 193080502 193080631 -9247716 + AluSp/q SINE Alu 176 311 -2 423 193 324 21 chr4 193081195 193081340 -9247007 + MLT1G1 LTR MaLR 340 528 -67 590 133 20 10 chr4 193081350 193081448 -9246899 + AluS SINE Alu 1 99 -214 2234 97 3 3 chr4 193081481 193081779 -9246568 - AluSg SINE Alu -12 298 1 459 260 128 32 chr4 193081804 193082023 -9246324 - L3 LINE CR1 -9 1568 1329 1821 151 3 10 chr4 193083505 193083796 -9244551 + AluJo SINE Alu 1 289 -23 4051 174 41 79 chr4 193084183 193085096 -9243251 - L1MB8 LINE L1 -6 6241 5294 2316 90 7 0 chr4 193085096 193085386 -9242961 - AluSp SINE Alu -21 292 1 4051 174 41 79 chr4 193085386 193086244 -9242103 - L1MB8 LINE L1 -953 5294 4520 497 231 0 0 chr4 193086244 193086348 -9241999 - U13 snRNA snRNA 0 104 1 4051 174 41 79 chr4 193086348 193086430 -9241917 - L1MB8 LINE L1 -1727 4520 4436 439 199 16 0 chr4 193086452 193086542 -9241805 + L1M4 LINE L1 3760 3852 -2294 1574 157 4 21 chr4 193086607 193086888 -9241459 - L1MA6 LINE L1 -45 6255 5980 3457 211 94 7 chr4 193086888 193087767 -9240580 - L1MB8 LINE L1 -1763 4452 3497 1402 244 105 36 chr4 193087754 193088756 -9239591 - L1MB8 LINE L1 -3668 2547 1616 * 225 0 0 0 chr4 193088756 193088781 -9239566 + (TTA)n Simple_repeat Simple_repeat 3 27 0 17250 33 3 0 chr4 193088781 193091571 -9236776 - L1PA2 LINE L1 -18 6137 3341 1402 244 105 36 chr4 193091571 193091682 -9236665 - L1MB8 LINE L1 -4598 1617 1362 225 0 0 0 chr4 193092013 193092038 -9236309 + (T)n Simple_repeat Simple_repeat 1 25 0 243 181 17 147 chr4 193092342 193092458 -9235889 - L1ME LINE L1 -5925 145 45 207 191 0 0 chr4 193092610 193092657 -9235690 + GA-rich Low_complexity Low_complexity 1 47 0 433 265 23 30 chr4 193094521 193094713 -9233634 - MIR SINE MIR -44 218 29 180 77 0 0 chr4 193094855 193094881 -9233466 + (CGGGG)n Simple_repeat Simple_repeat 2 27 0 665 199 23 0 chr4 193095448 193095624 -9232723 + GA-rich Low_complexity Low_complexity 1 180 0 323 288 27 36 chr4 193096788 193096899 -9231448 + L1ME LINE L1 5495 5604 -517 28 48 0 0 chr4 193096950 193096992 -9231355 + AT_rich Low_complexity Low_complexity 1 42 0 226 262 49 0 chr4 193097202 193097263 -9231084 + GA-rich Low_complexity Low_complexity 5 68 0 2057 119 18 0 chr4 193098234 193098536 -9229811 - AluSx SINE Alu 0 307 1 1941 159 7 7 chr4 193098544 193098845 -9229502 - AluJb SINE Alu -11 301 1 870 196 232 59 chr4 193099029 193099421 -9228926 + MLT1D LTR MaLR 1 460 -45 2202 110 3 3 chr4 193099433 193099723 -9228624 - AluSx SINE Alu -22 290 1 1413 125 0 0 chr4 193100175 193100359 -9227988 + AluSx SINE Alu 47 230 -82 835 165 0 0 chr4 193100422 193100555 -9227792 + FLAM_C SINE Alu 1 133 0 496 243 14 27 chr4 193100939 193101087 -9227260 - MLT1C LTR MaLR -321 146 1 533 312 57 4 chr4 193101184 193101463 -9226884 - L2 LINE L2 -1424 1890 1597 2301 98 0 22 chr4 193101513 193101830 -9226517 + AluSg SINE Alu 1 310 0 931 219 0 24 chr4 193102931 193103141 -9225206 - MER63A DNA MER1_type 0 210 6 906 259 41 41 chr4 193104127 193104490 -9223857 - MLT1I LTR MaLR -7 402 40 2284 101 0 10 chr4 193105392 193105688 -9222659 + AluSg1 SINE Alu 1 293 -16 208 246 33 0 chr4 193106348 193106409 -9221938 - L2 LINE L2 -213 3059 2997 1449 163 0 41 chr4 193107106 193107351 -9220996 + AluJo SINE Alu 46 280 -32 29 0 0 0 chr4 193107362 193107391 -9220956 + AT_rich Low_complexity Low_complexity 1 29 0 207 114 0 0 chr4 193107392 193107427 -9220920 + (CA)n Simple_repeat Simple_repeat 1 35 0 883 233 105 18 chr4 193107427 193107646 -9220701 + AluJo SINE Alu 29 266 -46 1294 255 101 72 chr4 193107736 193108101 -9220246 + L1M4 LINE L1 3437 3790 -2356 2069 136 3 13 chr4 193108101 193108411 -9219936 - AluSx SINE Alu -4 308 2 1294 255 101 72 chr4 193108411 193109104 -9219243 + L1M4 LINE L1 3790 4526 -1620 241 204 0 0 chr4 193109109 193109158 -9219189 - MER58A DNA MER1_type 0 224 176 568 196 301 0 chr4 193109209 193109352 -9218995 - MER58A DNA MER1_type -38 186 1 281 290 138 19 chr4 193109359 193109628 -9218719 + L1M4 LINE L1 4531 4831 -1315 2457 63 0 3 chr4 193111809 193112109 -9216238 + AluY SINE Alu 1 299 -12 1791 161 20 30 chr4 193112126 193112430 -9215917 - AluJb SINE Alu -11 301 1 2251 120 0 0 chr4 193112568 193112867 -9215480 - AluSq SINE Alu -14 299 1 507 33 0 0 chr4 193114884 193114945 -9213402 + (TG)n Simple_repeat Simple_repeat 2 62 0 25 0 0 0 chr4 193115707 193115732 -9212615 + AT_rich Low_complexity Low_complexity 1 25 0 1978 93 19 0 chr4 193116138 193116396 -9211951 + AluSg SINE Alu 41 303 -7 878 241 42 21 chr4 193117671 193117912 -9210435 - MIR SINE MIR 0 262 17 457 167 96 196 chr4 193118230 193118511 -9209836 + MER112 DNA MER1_type 3 255 -5 618 34 16 90 chr4 193118621 193118943 -9209404 + (TA)n Simple_repeat Simple_repeat 1 298 0 247 212 61 15 chr4 193119347 193119413 -9208934 + MIR3 SINE MIR 113 181 -27 199 311 0 0 chr4 193122188 193122249 -9206098 + MIR SINE MIR 74 134 -128 1581 143 17 49 chr4 193124038 193124325 -9204022 - AluJo SINE Alu -34 278 1 207 69 0 0 chr4 193126506 193126535 -9201812 + (TTG)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr4 193126682 193126704 -9201643 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr4 193127102 193127129 -9201218 + AT_rich Low_complexity Low_complexity 1 27 0 1765 111 3 87 chr4 193127698 193127791 -9200556 + MER46B DNA MER2_type 58 4294967277 -2750 2464 89 0 3 chr4 193127791 193128104 -9200243 + AluSx SINE Alu 1 312 0 1765 111 3 87 chr4 193128104 193128342 -9200005 + MER46B DNA MER2_type -20 236 0 413 86 0 0 chr4 193129072 193129130 -9199217 + L1MA3 LINE L1 6248 6305 0 1880 163 3 0 chr4 193129219 193129508 -9198839 + AluJb SINE Alu 1 290 -22 205 371 0 0 chr4 193129587 193129649 -9198698 + MIR3 SINE MIR 7 68 -140 640 240 154 29 chr4 193130621 193130796 -9197551 - MLT2D LTR ERVL -263 151 5 1287 278 106 38 chr4 193130840 193131287 -9197060 + L1MDb LINE L1 1116 1531 -4875 1606 179 31 14 chr4 193131287 193131577 -9196770 + AluJo SINE Alu 11 305 -7 2621 131 36 17 chr4 193131583 193132003 -9196344 - MSTA LTR MaLR 0 428 1 1287 278 106 38 chr4 193132003 193132418 -9195929 + L1MDb LINE L1 1535 2037 -4369 2342 216 58 33 chr4 193132757 193133447 -9194900 - L1M4 LINE L1 -1930 4216 3510 1287 167 23 0 chr4 193133453 193133669 -9194678 - AluJo SINE Alu 0 312 92 484 186 24 114 chr4 193133779 193133833 -9194514 - L1M4 LINE L1 -2724 3422 3365 2062 119 0 47 chr4 193133833 193134151 -9194196 + AluSx SINE Alu 1 303 -9 484 186 24 114 chr4 193134151 193134263 -9194084 - L1M4 LINE L1 -2781 3365 3271 * 881 244 3 10 chr4 193134231 193134478 -9193869 - L1MB8 LINE L1 -299 5885 5651 378 225 18 45 chr4 193135640 193135751 -9192596 - L1MA5 LINE L1 -326 5974 5867 184 170 94 0 chr4 193136217 193136270 -9192077 + MIR SINE MIR 75 132 -130 183 80 0 0 chr4 193136382 193136407 -9191940 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 2028 155 87 39 chr4 193136822 193137260 -9191087 - LTR2B LTR ERV1 0 490 32 3462 114 6 6 chr4 193137279 193137780 -9190567 - MER9 LTR ERVK -10 501 1 2256 105 0 0 chr4 193138283 193138569 -9189778 + AluY SINE Alu 9 294 -17 813 126 196 0 chr4 193138583 193138726 -9189621 + MER21B LTR ERV1 322 492 -371 451 225 158 17 chr4 193138954 193139074 -9189273 + MLT1A1 LTR MaLR 178 314 -51 551 182 0 0 chr4 193139140 193139228 -9189119 + AluJ/FLAM SINE Alu 2 89 -223 2265 116 0 6 chr4 193141233 193141544 -9186803 - AluSg SINE Alu -1 309 1 2947 3 0 0 chr4 193141559 193141868 -9186479 - AluYa5 SINE Alu -2 309 1 189 273 106 0 chr4 193142303 193142369 -9185978 - L2 LINE L2 -31 3241 3169 6761 157 83 146 chr4 193142521 193144394 -9183953 + MER52A LTR ERV1 1 1755 0 704 106 0 19 chr4 193144471 193144575 -9183772 - L1PA13 LINE L1 -366 5799 5698 2377 126 6 0 chr4 193144575 193144920 -9183427 + L1PA13 LINE L1 5797 6163 0 2115 128 3 25 chr4 193144925 193145244 -9183103 + AluSx SINE Alu 1 312 0 216 322 33 16 chr4 193145499 193145620 -9182727 - MIR SINE MIR -93 169 47 2093 95 3 109 chr4 193145733 193146081 -9182266 - AluSp SINE Alu 0 313 3 255 61 0 0 chr4 193147260 193147293 -9181054 + (GCCTG)n Simple_repeat Simple_repeat 5 37 0 386 275 82 29 chr4 193147899 193148070 -9180277 + MER20B DNA MER1_type 1 180 -603 1905 124 6 48 chr4 193148649 193148963 -9179384 + AluSx SINE Alu 1 301 -11 23 0 0 0 chr4 193149255 193149278 -9179069 + AT_rich Low_complexity Low_complexity 1 23 0 1682 187 7 0 chr4 193149278 193149562 -9178785 - AluJb SINE Alu -26 286 1 182 290 29 14 chr4 193149608 193149677 -9178670 - L3 LINE CR1 -571 1006 937 402 208 0 0 chr4 193149853 193149930 -9178417 + Tigger5 DNA MER2_type 2242 2318 -5 * 509 165 13 0 chr4 193149929 193150008 -9178339 - Tigger5 DNA MER2_type -2243 80 1 220 51 26 26 chr4 193150099 193150138 -9178209 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 2293 127 38 14 chr4 193150364 193150733 -9177614 + MER83B LTR ERV1 1 378 0 2311 98 0 22 chr4 193152314 193152631 -9175716 - AluSg SINE Alu 0 310 1 441 228 10 10 chr4 193152631 193152732 -9175615 - L2 LINE L2 -10 3303 3203 523 246 107 37 chr4 193153018 193153233 -9175114 + MIR SINE MIR 32 261 -1 704 204 67 82 chr4 193154525 193154795 -9173552 - MER102b DNA MER1_type -32 309 44 2130 103 40 10 chr4 193154875 193155175 -9173172 - AluSx SINE Alu -3 309 1 189 0 0 0 chr4 193156471 193156492 -9171855 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1108 53 0 0 chr4 193156494 193156625 -9171722 - AluSc SINE Alu -18 291 161 506 103 0 0 chr4 193157176 193157244 -9171103 + FLAM SINE Alu 50 117 -26 204 125 0 0 chr4 193157275 193157307 -9171040 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 1184 190 128 45 chr4 193157866 193158203 -9170144 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr4 193160576 193160598 -9167749 + AT_rich Low_complexity Low_complexity 1 22 0 510 280 82 50 chr4 193160602 193161067 -9167280 - L1ME4a LINE L1 -18 6103 5624 2124 124 17 7 chr4 193161650 193161949 -9166398 + AluSx SINE Alu 1 302 -10 10352 193 88 31 chr4 193162910 193165442 -9162905 + L1MC1 LINE L1 16 2403 -4023 284 73 0 0 chr4 193165442 193165483 -9162864 - AluSx SINE Alu -7 293 253 1688 99 0 0 chr4 193165483 193165695 -9162652 - AluSx SINE Alu -100 212 1 10352 193 88 31 chr4 193165695 193166186 -9162161 + L1MC1 LINE L1 2402 3256 -3170 5379 194 71 23 chr4 193166225 193167434 -9160913 + L1MC1 LINE L1 3828 4978 -1635 1538 128 60 123 chr4 193167434 193167800 -9160547 + MER2 DNA MER2_type 1 343 -1 5379 194 71 23 chr4 193167800 193169250 -9159097 + L1MC1 LINE L1 4978 6608 -5 291 280 64 8 chr4 193169314 193169370 -9158977 + L2 LINE L2 3149 3200 -113 1536 174 8 15 chr4 193169370 193169634 -9158713 - AluJo SINE Alu -11 301 40 291 280 64 8 chr4 193169634 193169702 -9158645 + L2 LINE L2 3200 3280 -33 840 261 58 10 chr4 193169760 193169967 -9158380 - MIR SINE MIR -31 231 15 890 243 171 0 chr4 193170111 193170445 -9157902 + L1ME3A LINE L1 5739 6129 -41 2473 50 10 3 chr4 193170447 193170744 -9157603 - AluY SINE Alu -11 300 2 373 310 14 0 chr4 193173429 193173571 -9154776 - Charlie8 DNA MER1_type -2214 203 60 191 307 158 9 chr4 193173795 193173909 -9154438 + L2 LINE L2 3142 3272 0 24 32 0 0 chr4 193176948 193176979 -9151368 + AT_rich Low_complexity Low_complexity 1 31 0 472 128 0 0 chr4 193182123 193182209 -9146138 + L1MB1 LINE L1 4385 4470 -1676 1208 111 32 0 chr4 193182217 193182406 -9145941 - MER30 DNA MER1_type -35 195 1 2369 131 73 27 chr4 193182406 193182661 -9145686 + L1MB1 LINE L1 4461 4703 -1443 2959 117 5 0 chr4 193182661 193183089 -9145258 + MER57B LTR ERV1 1 430 -4 2369 131 73 27 chr4 193183089 193183353 -9144994 + L1MB1 LINE L1 4703 5004 -1142 22 0 0 0 chr4 193183496 193183518 -9144829 + AT_rich Low_complexity Low_complexity 1 22 0 2480 146 54 6 chr4 193183534 193184000 -9144347 + L1MB1 LINE L1 5670 6157 -11 402 259 87 49 chr4 193184571 193184754 -9143593 - MIR SINE MIR -19 243 48 2228 101 10 3 chr4 193185898 193186205 -9142142 + AluSq SINE Alu 1 309 -4 2336 200 36 31 chr4 193186219 193186406 -9141941 + L1MB8 LINE L1 5593 5778 -400 2253 124 0 0 chr4 193186406 193186705 -9141642 + AluSx SINE Alu 1 299 -13 2336 200 36 31 chr4 193186705 193187097 -9141250 + L1MB8 LINE L1 5778 6175 -3 285 342 143 21 chr4 193187235 193187530 -9140817 + L2 LINE L2 2743 3078 -235 692 176 59 0 chr4 193187533 193187652 -9140695 + FLAM_A SINE Alu 2 127 -6 294 282 112 50 chr4 193187746 193187784 -9140563 - L1M4 LINE L1 -2198 3948 3914 2385 113 0 0 chr4 193187784 193188095 -9140252 + AluSx SINE Alu 1 311 -1 294 282 112 50 chr4 193188095 193188297 -9140050 - L1M4 LINE L1 -2232 3914 3693 338 250 184 20 chr4 193188379 193188651 -9139696 - L1M4 LINE L1 -2679 3467 3241 2178 123 3 13 chr4 193188651 193188959 -9139388 - AluSq SINE Alu -8 305 1 338 250 184 20 chr4 193188959 193189094 -9139253 - L1M4 LINE L1 -2905 3241 2993 * 1905 206 65 74 chr4 193189092 193189227 -9139120 - L1MD3 LINE L1 -150 7845 7710 1659 195 3 7 chr4 193189227 193189529 -9138818 + AluJb SINE Alu 1 301 -11 1905 206 65 74 chr4 193189529 193190052 -9138295 - L1MD3 LINE L1 -285 7710 7193 866 265 83 32 chr4 193190134 193190508 -9137839 - L1ME3A LINE L1 -16 6137 5745 428 208 31 0 chr4 193190626 193190722 -9137625 - L1ME3A LINE L1 -622 5527 5429 251 253 13 0 chr4 193190792 193190867 -9137480 - L1ME3A LINE L1 -3382 2747 2672 240 237 193 18 chr4 193190965 193191079 -9137268 - L1ME3A LINE L1 -3545 2584 2451 439 280 31 14 chr4 193191196 193191470 -9136877 - L1ME3A LINE L1 -3819 2310 2032 286 231 23 0 chr4 193191512 193191614 -9136733 - L1ME3A LINE L1 -861 1629 1492 312 338 56 10 chr4 193191701 193191899 -9136448 - L1ME3A LINE L1 -5158 961 755 308 301 68 68 chr4 193191979 193192112 -9136235 - L1ME3A LINE L1 -5476 643 511 618 268 152 49 chr4 193192743 193192999 -9135348 - L1M4 LINE L1 -2989 3157 2929 1678 164 4 7 chr4 193192999 193193268 -9135079 + AluJb SINE Alu 44 311 -1 618 268 152 49 chr4 193193268 193193459 -9134888 - L1M4 LINE L1 -3217 2929 2664 383 258 25 42 chr4 193193485 193193605 -9134742 + L2 LINE L2 3160 3277 -36 327 272 25 0 chr4 193193605 193193686 -9134661 + L2 LINE L2 3230 3312 -1 1017 248 111 73 chr4 193194173 193194493 -9133854 + L1MC5 LINE L1 6663 6969 -992 2251 129 0 0 chr4 193194493 193194803 -9133544 + AluSx SINE Alu 1 310 -2 1017 248 111 73 chr4 193194803 193195264 -9133083 + L1MC5 LINE L1 6969 7411 -550 180 0 0 0 chr4 193195264 193195284 -9133063 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1017 248 111 73 chr4 193195284 193195322 -9133025 + L1MC5 LINE L1 7411 7446 -515 2043 117 0 46 chr4 193195322 193195648 -9132699 + AluSq SINE Alu 1 311 -2 1017 248 111 73 chr4 193195648 193195914 -9132433 + L1MC5 LINE L1 7446 7791 -170 235 196 0 0 chr4 193195943 193195994 -9132353 + L1MC5 LINE L1 7852 7902 -59 1751 203 12 9 chr4 193196020 193196365 -9131982 - MER7A DNA MER2_type -1 345 2 1927 133 26 26 chr4 193196368 193196670 -9131677 - AluSx SINE Alu -10 302 1 426 285 118 33 chr4 193196809 193197079 -9131268 - L1M4 LINE L1 -1632 4514 4222 286 252 26 0 chr4 193197093 193197201 -9131146 - L1ME2 LINE L1 -19 6216 6102 1358 218 67 0 chr4 193197250 193197581 -9130766 - L1ME2 LINE L1 -303 5932 5580 1972 248 89 20 chr4 193197587 193198500 -9129847 - L1ME2 LINE L1 -3144 3071 2089 2518 57 0 0 chr4 193198500 193198801 -9129546 - AluY SINE Alu -10 301 1 1972 248 89 20 chr4 193198801 193198837 -9129510 - L1ME2 LINE L1 -4126 2089 2057 1198 248 140 28 chr4 193198991 193199454 -9128893 - MLT1E2 LTR MaLR 0 626 112 305 174 0 9 chr4 193199556 193199633 -9128714 + MER58 DNA MER1_type 2337 2411 -9 713 251 105 16 chr4 193199651 193200022 -9128325 - L1ME2 LINE L1 -4367 2029 1626 * 1921 155 98 2 chr4 193200012 193200418 -9127929 - L1MB4 LINE L1 0 6180 5736 730 223 76 53 chr4 193200452 193200831 -9127516 + MLT2D LTR ERVL 83 468 -52 638 189 0 0 chr4 193200842 193200977 -9127370 + L1M3 LINE L1 5567 5701 -479 928 122 29 6 chr4 193200991 193201163 -9127184 - L1M3 LINE L1 -687 5493 5318 1182 256 133 25 chr4 193201173 193201927 -9126420 - L1ME2 LINE L1 -4754 1642 808 352 259 84 21 chr4 193201925 193202068 -9126279 - L1MA10 LINE L1 -8 6326 6175 * 1198 278 97 50 chr4 193202129 193202871 -9125476 - L1ME2 LINE L1 -5583 813 37 1888 166 12 12 chr4 193203995 193204333 -9124014 + MER44D DNA MER2_type 2 609 0 2299 66 38 0 chr4 193204555 193204843 -9123504 - AluSp SINE Alu -14 299 1 24 53 0 0 chr4 193206426 193206464 -9121883 + AT_rich Low_complexity Low_complexity 1 38 0 295 276 8 67 chr4 193206826 193206960 -9121387 + L3 LINE CR1 333 458 -1119 2067 116 7 3 chr4 193207233 193207526 -9120821 + AluSg SINE Alu 1 294 -16 819 176 0 0 chr4 193208024 193208155 -9120192 - FLAM_C SINE Alu -10 133 3 497 173 179 6 chr4 193208185 193208347 -9120000 + L1M4 LINE L1 2798 2987 -3159 996 185 16 96 chr4 193208464 193208767 -9119580 + Tigger3(Golem) DNA MER2_type 2760 3038 0 671 180 75 40 chr4 193208787 193208987 -9119360 - L1MA9 LINE L1 -38 6274 6068 1419 128 5 23 chr4 193309012 193309231 -9019116 + AluJo SINE Alu 84 298 -14 887 107 93 0 chr4 193311219 193311369 -9016978 - MSTB2 LTR MaLR -293 164 1 664 260 17 0 chr4 193311385 193311558 -9016789 + MIR SINE MIR 87 262 0 1748 170 14 7 chr4 193311806 193312094 -9016253 - AluJb SINE Alu -10 302 13 759 177 8 8 chr4 193312111 193312241 -9016106 - FLAM_A SINE Alu -3 130 1 2354 105 0 13 chr4 193312498 193312813 -9015534 + AluSx SINE Alu 1 311 -1 692 303 0 0 chr4 193312856 193313210 -9015137 + GA-rich Low_complexity Low_complexity 1 354 0 385 149 0 149 chr4 193313216 193313424 -9014923 + (GGAAA)n Simple_repeat Simple_repeat 2 178 0 * 699 284 0 9 chr4 193313283 193313531 -9014816 + GA-rich Low_complexity Low_complexity 1 245 0 253 89 0 164 chr4 193313532 193313745 -9014602 + (GGAAA)n Simple_repeat Simple_repeat 1 178 0 378 256 0 0 chr4 193313746 193313828 -9014519 + GA-rich Low_complexity Low_complexity 5 86 0 1814 113 0 34 chr4 193314080 193314346 -9014001 + AluSq SINE Alu 55 311 -2 790 291 174 33 chr4 193315679 193316195 -9012152 + MLT1L LTR MaLR 7 595 -20 1896 281 61 36 chr4 193316435 193317203 -9011144 + L1M4 LINE L1 2 788 -5754 230 274 8 120 chr4 193317471 193317588 -9010759 + MIR SINE MIR 49 152 -110 2481 61 3 3 chr4 193317635 193317931 -9010416 - AluY SINE Alu -15 296 1 189 0 0 0 chr4 193317945 193317966 -9010381 + (TTAA)n Simple_repeat Simple_repeat 1 21 0 2394 163 19 10 chr4 193318186 193318637 -9009710 - L1M4 LINE L1 -434 5744 5290 238 277 76 8 chr4 193318970 193319089 -9009258 - MLT1J2 LTR MaLR -323 127 1 201 294 82 0 chr4 193319344 193319429 -9008918 - L2 LINE L2 -25 3247 3156 1855 195 113 31 chr4 193319589 193319868 -9008479 - L1MB2 LINE L1 -2 6169 5838 2249 124 0 0 chr4 193319868 193320166 -9008181 - AluSx SINE Alu -14 298 1 1855 195 113 31 chr4 193320166 193320338 -9008009 - L1MB2 LINE L1 -333 5838 5681 32 75 0 0 chr4 193320524 193320591 -9007756 + AT_rich Low_complexity Low_complexity 1 67 0 425 196 0 63 chr4 193320592 193320781 -9007566 + (TAAA)n Simple_repeat Simple_repeat 2 178 0 318 259 181 0 chr4 193320781 193320947 -9007400 - L1ME LINE L1 -277 5844 5649 256 210 25 0 chr4 193321398 193321479 -9006868 + (CA)n Simple_repeat Simple_repeat 2 84 0 663 176 25 0 chr4 193321480 193321599 -9006748 - MLT2D LTR ERVL -113 301 180 237 33 0 0 chr4 193322255 193322285 -9006062 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 1373 172 61 15 chr4 193322287 193322549 -9005798 - AluJo SINE Alu -31 281 8 37 52 0 0 chr4 193322738 193322796 -9005551 + AT_rich Low_complexity Low_complexity 1 58 0 2295 168 72 0 chr4 193323511 193323928 -9004419 + L1PA16 LINE L1 5717 6163 -3 7417 63 10 10 chr4 193325357 193326610 -9001737 - SVA Other Other -839 1386 250 2364 102 0 6 chr4 193326875 193327190 -9001157 - AluSq SINE Alu 0 313 1 351 250 162 7 chr4 193327363 193327511 -9000836 + MIR SINE MIR 34 204 -58 3417 124 31 0 chr4 193327516 193328024 -9000323 + MER1A DNA MER1_type 1 524 -3 1776 159 29 23 chr4 193329167 193329476 -8998871 - AluJb SINE Alu -1 311 1 975 81 16 0 chr4 193330079 193330202 -8998145 + AluSq/x SINE Alu 1 125 -188 278 85 0 21 chr4 193330679 193330726 -8997621 + (CCCCCT)n Simple_repeat Simple_repeat 2 47 0 366 217 11 33 chr4 193330752 193330936 -8997411 + (CGGGG)n Simple_repeat Simple_repeat 1 180 0 2090 138 3 0 chr4 193331377 193331675 -8996672 + AluSg SINE Alu 1 299 -11 196 254 48 0 chr4 193331755 193331818 -8996529 + MIR SINE MIR 196 261 -1 1253 200 98 104 chr4 193332096 193332491 -8995856 + MLT1F1 LTR MaLR 11 443 -124 2533 143 44 0 chr4 193332491 193332897 -8995450 - MSTA LTR MaLR 0 428 5 1253 200 98 104 chr4 193332897 193333022 -8995325 + MLT1F1 LTR MaLR 443 567 0 415 319 12 59 chr4 193333131 193333300 -8995047 + MIR SINE MIR 28 188 -74 2085 213 89 7 chr4 193334155 193334714 -8993633 + L1MC4 LINE L1 6737 7341 -701 420 144 133 0 chr4 193334760 193334850 -8993497 + L1MC4 LINE L1 7940 8041 -1 2228 65 36 0 chr4 193335388 193335714 -8992633 + AluSx SINE Alu 1 336 0 595 249 101 0 chr4 193335828 193335857 -8992490 + MER5A DNA MER1_type 3 28 -161 186 43 0 0 chr4 193335857 193335880 -8992467 + (CAG)n Simple_repeat Simple_repeat 1 23 0 595 249 101 0 chr4 193335880 193336019 -8992328 + MER5A DNA MER1_type 28 188 -1 24 32 0 0 chr4 193336669 193336700 -8991647 + GC_rich Low_complexity Low_complexity 1 31 0 21 82 0 0 chr4 193336843 193336892 -8991455 + GC_rich Low_complexity Low_complexity 1 49 0 24 32 0 0 chr4 193337102 193337133 -8991214 + GC_rich Low_complexity Low_complexity 1 31 0 23 114 0 0 chr4 193337586 193337700 -8990647 + GC_rich Low_complexity Low_complexity 1 114 0 3597 217 93 29 chr4 193339063 193340269 -8988078 + L1M4b LINE L1 1270 2628 -4331 249 349 38 15 chr4 193340461 193340593 -8987754 + L2 LINE L2 2711 2845 -469 239 306 58 41 chr4 193340994 193341115 -8987232 + MIR SINE MIR 89 211 -51 187 262 83 60 chr4 193341158 193341242 -8987105 + L2 LINE L2 3227 3312 -1 30 0 0 0 chr4 193341569 193341599 -8986748 + AT_rich Low_complexity Low_complexity 1 30 0 1169 200 48 4 chr4 193342312 193342542 -8985805 + MER58B DNA MER1_type 102 341 0 2335 101 0 3 chr4 193342842 193343150 -8985197 - AluSg1 SINE Alu -2 307 1 22 56 0 0 chr4 193343158 193343194 -8985153 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 193343450 193343471 -8984876 + AT_rich Low_complexity Low_complexity 1 21 0 936 214 32 63 chr4 193344510 193344838 -8983509 + AluJo SINE Alu 6 324 0 2042 126 11 0 chr4 193344855 193345140 -8983207 + AluJb SINE Alu 3 290 -22 237 65 0 0 chr4 193345948 193345979 -8982368 + (CA)n Simple_repeat Simple_repeat 2 32 0 875 155 35 29 chr4 193346653 193346827 -8981520 + MLT2D LTR ERVL 1 175 -239 314 301 60 15 chr4 193352010 193352143 -8976204 - L2 LINE L2 -2 3311 3173 304 275 49 122 chr4 193352624 193352951 -8975396 - L1ME4a LINE L1 -18 6103 5801 216 0 0 0 chr4 193353995 193354019 -8974328 + (ATTAG)n Simple_repeat Simple_repeat 4 27 0 521 313 51 10 chr4 193354287 193354482 -8973865 - MIR3 SINE MIR -5 203 1 330 147 0 0 chr4 193354489 193354557 -8973790 + (A)n Simple_repeat Simple_repeat 1 68 0 1098 189 0 19 chr4 193355311 193355517 -8972830 + AluJb SINE Alu 108 309 -3 2580 56 0 0 chr4 193356647 193356950 -8971397 - AluY SINE Alu -8 303 1 1048 61 74 7 chr4 193358472 193358620 -8969727 + MER30 DNA MER1_type 1 158 -72 1838 139 7 39 chr4 193358757 193359066 -8969281 - AluJb SINE Alu -13 299 1 2217 120 0 0 chr4 193359074 193359375 -8968972 - AluSc SINE Alu -8 301 1 1250 157 14 18 chr4 193359992 193360214 -8968133 - MER31A LTR ERV1 -1 484 264 1532 177 157 9 chr4 193360214 193360389 -8967958 + MSTD LTR MaLR 1 149 -247 195 42 0 0 chr4 193360389 193360413 -8967934 + (CCCCCA)n Simple_repeat Simple_repeat 3 26 0 1532 177 157 9 chr4 193360413 193360582 -8967765 + MSTD LTR MaLR 149 396 0 1535 106 82 12 chr4 193360589 193360834 -8967513 - MER31A LTR ERV1 -223 262 1 1904 158 13 7 chr4 193361607 193361910 -8966437 - AluJo SINE Alu -7 305 1 21 0 0 0 chr4 193362656 193362677 -8965670 + AT_rich Low_complexity Low_complexity 1 21 0 1015 194 216 3 chr4 193362685 193362780 -8965567 - MER2 DNA MER2_type -1 343 269 2219 113 3 0 chr4 193362780 193363080 -8965267 + AluSx SINE Alu 1 301 -11 1015 194 216 3 chr4 193363080 193363267 -8965080 - MER2 DNA MER2_type -75 269 1 297 366 0 20 chr4 193363491 193363644 -8964703 + L1ME LINE L1 5485 5634 -487 21 0 0 0 chr4 193363981 193364002 -8964345 + AT_rich Low_complexity Low_complexity 1 21 0 283 83 0 62 chr4 193364187 193364235 -8964112 + L1PA3 LINE L1 6108 6152 -3 548 265 17 33 chr4 193365690 193365871 -8962476 - MER5A DNA MER1_type -5 184 7 621 247 123 22 chr4 193366599 193366826 -8961521 - MIR SINE MIR 0 262 13 1804 158 27 0 chr4 193366893 193367190 -8961157 + AluJo SINE Alu 5 309 -3 419 268 56 20 chr4 193367193 193367391 -8960956 - L1MC5 LINE L1 -66 7895 7691 1145 146 28 0 chr4 193367401 193367579 -8960768 + FRAM SINE Alu 1 175 -1 399 193 35 76 chr4 193367600 193367745 -8960602 - L1MC5 LINE L1 -271 7690 7552 189 224 86 0 chr4 193367813 193367871 -8960476 - L2 LINE L2 -5 3308 3246 327 221 66 52 chr4 193369296 193369432 -8958915 + MLT1K LTR MaLR 433 570 -18 298 171 57 0 chr4 193371340 193371410 -8956937 + L1PB4 LINE L1 6060 6133 -23 2392 112 0 0 chr4 193371651 193371963 -8956384 - AluSq SINE Alu -1 312 1 2504 80 3 0 chr4 193372160 193372462 -8955885 - AluSx SINE Alu -9 303 1 2762 13 3 3 chr4 193373372 193373676 -8954671 + AluYa5 SINE Alu 1 304 -7 223 364 0 0 chr4 193373743 193373820 -8954527 + MIR SINE MIR 94 170 -92 490 293 52 26 chr4 193374751 193374980 -8953367 + MIR SINE MIR 28 262 0 271 232 73 90 chr4 193375048 193375225 -8953122 - L1ME3A LINE L1 -38 6132 5959 2006 105 60 0 chr4 193375376 193375665 -8952682 - AluSg SINE Alu 0 305 1 221 245 94 28 chr4 193375667 193375773 -8952574 - L2 LINE L2 -175 3138 3026 239 118 0 0 chr4 193376428 193376462 -8951885 - MER103 DNA DNA -80 86 53 444 268 21 0 chr4 193377329 193377471 -8950876 + MER103 DNA DNA 13 157 -9 2204 114 3 0 chr4 193377603 193377901 -8950446 - AluSx SINE Alu -13 299 1 759 211 6 13 chr4 193379940 193380122 -8948225 + FRAM SINE Alu 1 166 0 855 169 6 25 chr4 193381492 193381652 -8946695 + FRAM SINE Alu 6 162 -14 28 0 0 0 chr4 193383807 193383835 -8944512 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 193384864 193384887 -8943460 + AT_rich Low_complexity Low_complexity 1 23 0 2173 120 3 3 chr4 193385272 193385564 -8942783 - AluSx SINE Alu -20 292 1 2479 70 7 0 chr4 193386374 193386673 -8941674 + AluSp SINE Alu 1 301 -12 2380 46 26 3 chr4 193387853 193388157 -8940190 + AluY SINE Alu 1 311 0 495 336 50 8 chr4 193389386 193389624 -8938723 + MIR SINE MIR 12 259 -3 2203 112 6 22 chr4 193389701 193390013 -8938334 - AluSx SINE Alu -3 309 3 305 262 119 16 chr4 193390034 193390160 -8938187 + L2 LINE L2 3134 3272 0 484 218 0 0 chr4 193390321 193390408 -8937939 + AluJ/FLAM SINE Alu 2 88 -224 2367 118 19 27 chr4 193390408 193390774 -8937573 + THE1B LTR MaLR 1 363 -1 2240 83 6 49 chr4 193390775 193391099 -8937248 + AluY SINE Alu 1 310 -1 369 0 0 0 chr4 193391099 193391140 -8937207 + (TA)n Simple_repeat Simple_repeat 2 42 0 1242 175 48 24 chr4 193391906 193392158 -8936189 - AluJb SINE Alu -54 258 1 311 200 21 32 chr4 193393386 193393481 -8934866 + MER5A DNA MER1_type 9 102 -87 198 0 0 0 chr4 193393815 193393837 -8934510 + (CTG)n Simple_repeat Simple_repeat 1 22 0 1969 132 0 30 chr4 193393839 193394135 -8934212 - AluSx SINE Alu -25 287 1 310 337 24 24 chr4 193394142 193394311 -8934036 - MIR SINE MIR -53 209 41 234 295 114 47 chr4 193396047 193396126 -8932221 + MIR3 SINE MIR 35 107 -101 2148 99 33 16 chr4 193396126 193396429 -8931918 - AluSx SINE Alu -4 308 1 234 295 114 47 chr4 193396429 193396498 -8931849 + MIR3 SINE MIR 107 193 -15 189 147 0 0 chr4 193396544 193396578 -8931769 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 2121 113 7 10 chr4 193397366 193397658 -8930689 + AluSc SINE Alu 1 291 -18 548 284 6 12 chr4 193398844 193399006 -8929341 - MIR3 SINE MIR -11 197 37 975 151 110 33 chr4 193399178 193399450 -8928897 - L1MC5 LINE L1 -52 7909 7617 2493 51 10 0 chr4 193399468 193399761 -8928586 - AluY SINE Alu -15 296 1 2277 92 0 7 chr4 193399996 193400299 -8928048 - AluSx SINE Alu -11 301 1 606 133 0 48 chr4 193400538 193400643 -8927704 + FLAM_C SINE Alu 38 137 -6 2138 122 0 16 chr4 193403122 193403425 -8924922 + AluSq SINE Alu 1 298 -15 295 342 88 10 chr4 193403690 193403883 -8924464 - MIR SINE MIR -37 225 18 1770 161 6 32 chr4 193403887 193404198 -8924149 - AluJo SINE Alu -9 303 1 666 221 149 9 chr4 193404400 193404622 -8923725 - MIR SINE MIR 0 262 10 1956 194 72 7 chr4 193405267 193405700 -8922647 + MLT1C LTR MaLR 7 467 0 229 239 0 0 chr4 193406105 193406151 -8922196 + L1MEd LINE L1 5 50 -6069 2125 104 0 4 chr4 193406370 193406648 -8921699 + AluSc SINE Alu 20 296 -13 330 153 0 0 chr4 193406677 193406736 -8921611 + GA-rich Low_complexity Low_complexity 2 60 0 1097 325 3 98 chr4 193406974 193407300 -8921047 + AluJb SINE Alu 1 295 -7 570 101 1 87 chr4 193407360 193407476 -8920871 + L1PB1 LINE L1 5696 5801 -350 354 92 31 31 chr4 193407476 193407574 -8920773 + (TA)n Simple_repeat Simple_repeat 1 98 0 2361 130 3 6 chr4 193407574 193407936 -8920411 + L1PB1 LINE L1 5782 6142 -9 29 47 0 0 chr4 193407953 193407996 -8920351 + AT_rich Low_complexity Low_complexity 1 43 0 207 282 65 43 chr4 193408048 193408267 -8920080 - MIR SINE MIR -3 259 1 2605 21 0 7 chr4 193408468 193408758 -8919589 - AluY SINE Alu -23 288 1 1635 146 8 11 chr4 193410084 193410352 -8917995 + AluJb SINE Alu 37 303 -9 505 284 49 84 chr4 193411655 193411940 -8916407 + L2 LINE L2 3038 3312 -1 1735 193 3 0 chr4 193412515 193412811 -8915536 - AluJo SINE Alu -7 305 9 255 237 13 0 chr4 193412820 193412896 -8915451 + Charlie7 DNA MER1_type 280 356 -2256 * 555 244 29 6 chr4 193412892 193413064 -8915283 + Charlie7 DNA MER1_type 1490 1665 -947 27 0 0 0 chr4 193414232 193414259 -8914088 + AT_rich Low_complexity Low_complexity 1 27 0 264 274 134 86 chr4 193414453 193415026 -8913321 - L2 LINE L2 -831 2483 1883 10933 131 14 16 chr4 193415043 193416733 -8911614 + Tigger1 DNA MER2_type 3 1689 -729 29 28 0 0 chr4 193417011 193417047 -8911300 + AT_rich Low_complexity Low_complexity 1 36 0 5038 167 5 36 chr4 193417050 193418167 -8910180 - L1MB3 LINE L1 -3 6180 5096 256 194 22 10 chr4 193418270 193418381 -8909966 - L2 LINE L2 -36 3277 3193 626 280 89 21 chr4 193419289 193419780 -8908567 + L2 LINE L2 2716 3311 -2 3256 118 29 35 chr4 193419955 193420470 -8907877 - MER1A DNA MER1_type 0 529 18 180 0 0 0 chr4 193424706 193424726 -8903621 + (T)n Simple_repeat Simple_repeat 1 20 0 181 188 47 71 chr4 193427074 193427159 -8901188 + MIR SINE MIR 33 115 -93 304 300 77 15 chr4 193428792 193428922 -8899425 + L2 LINE L2 3133 3270 -2 2186 100 0 0 chr4 193429604 193429883 -8898464 + AluSg SINE Alu 1 279 -31 285 246 56 56 chr4 193429929 193430055 -8898292 + MER113 DNA MER1_type? 3 128 -393 1343 138 5 14 chr4 193430364 193430581 -8897766 + AluJb SINE Alu 96 310 -2 1676 237 33 7 chr4 193431602 193432054 -8896293 + MLT1C LTR MaLR 1 464 -3 665 299 62 0 chr4 193432455 193432679 -8895668 + MIR SINE MIR 4 241 -21 378 94 0 0 chr4 193432695 193432748 -8895599 - MADE1 DNA Mariner -27 53 1 210 325 42 42 chr4 193433123 193433243 -8895104 + L2 LINE L2 3136 3255 -17 543 301 39 13 chr4 193433919 193434148 -8894199 + MIR SINE MIR 28 262 0 1555 195 14 0 chr4 193435734 193436016 -8892331 - AluJo SINE Alu -24 288 3 2109 120 27 0 chr4 193436222 193436522 -8891825 - AluSx SINE Alu -4 308 1 2530 58 0 0 chr4 193438465 193438757 -8889590 - AluSg1 SINE Alu -16 293 2 3731 171 26 11 chr4 193438757 193439449 -8888898 - L1MB3 LINE L1 -31 6152 5451 386 264 93 14 chr4 193440078 193440218 -8888129 + MER5A DNA MER1_type 39 189 0 834 132 0 0 chr4 193441468 193441597 -8886750 - FLAM_C SINE Alu -4 129 1 234 240 203 29 chr4 193442536 193442674 -8885673 - MIR SINE MIR -64 198 38 2375 81 10 3 chr4 193442738 193443036 -8885311 - AluSx SINE Alu -12 300 1 447 258 88 10 chr4 193443294 193443488 -8884859 + MIR SINE MIR 11 219 -43 670 110 0 18 chr4 193444842 193444951 -8883396 + AluSc SINE Alu 203 309 0 2526 60 0 3 chr4 193445978 193446279 -8882068 - AluY SINE Alu -11 300 1 1193 146 0 0 chr4 193446282 193446453 -8881894 - AluJo/FRAM SINE Alu -13 299 129 1735 130 44 57 chr4 193446456 193446772 -8881575 - AluJo SINE Alu 0 312 1 2148 121 0 0 chr4 193447257 193447539 -8880808 + AluSx SINE Alu 1 282 -30 469 225 0 0 chr4 193447847 193447936 -8880411 + MER94 DNA DNA 46 134 0 323 296 66 30 chr4 193448044 193448379 -8879968 - L2 LINE L2 -639 2675 2329 282 225 0 38 chr4 193448419 193448499 -8879848 + (TA)n Simple_repeat Simple_repeat 1 77 0 252 0 0 0 chr4 193449370 193449398 -8878949 + (TTG)n Simple_repeat Simple_repeat 1 28 0 2181 94 0 0 chr4 193449402 193449678 -8878669 - AluSq SINE Alu -37 276 1 2015 126 11 0 chr4 193450011 193450297 -8878050 + AluSx SINE Alu 1 289 -23 207 0 0 0 chr4 193450300 193450323 -8878024 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1496 263 78 37 chr4 193450615 193451177 -8877170 - MER20B DNA MER1_type 0 783 199 279 276 86 58 chr4 193451607 193451781 -8876566 + MIR SINE MIR 78 256 -6 864 306 45 29 chr4 193453548 193454168 -8874179 + HAL1b LINE L1 16 645 -703 913 264 99 26 chr4 193454294 193454978 -8873369 + L1M4 LINE L1 4944 5393 -753 776 274 54 48 chr4 193454980 193455171 -8873176 + L1MC4 LINE L1 7394 7589 -453 348 24 0 0 chr4 193455171 193455212 -8873135 + (CA)n Simple_repeat Simple_repeat 2 42 0 776 274 54 48 chr4 193455212 193455374 -8872973 + L1MC4 LINE L1 7589 7749 -293 2062 179 113 24 chr4 193455484 193456170 -8872177 + L1MA2 LINE L1 5120 5882 -422 * 2596 110 32 53 chr4 193455745 193456218 -8872129 + L1PB4 LINE L1 5472 5934 -222 256 163 61 0 chr4 193456289 193456338 -8872009 + L1M4 LINE L1 5846 5897 -281 336 185 0 130 chr4 193456344 193456436 -8871911 + L1PB4 LINE L1 5958 6037 -119 797 143 8 0 chr4 193456450 193456576 -8871771 + L1PB4 LINE L1 6028 6154 -2 326 206 16 0 chr4 193456580 193456643 -8871704 - L1MC/D LINE L1 -646 5990 5927 5142 239 62 90 chr4 193456646 193456888 -8871459 - L1MDa LINE L1 -1877 4663 4416 1258 118 15 15 chr4 193456888 193457083 -8871264 - L1PA16 LINE L1 0 6166 5972 5142 239 62 90 chr4 193457083 193457280 -8871067 - L1MDa LINE L1 -2124 4416 4215 2257 108 0 7 chr4 193457280 193457585 -8870762 - AluSc SINE Alu -6 303 1 5142 239 62 90 chr4 193457585 193459764 -8868583 - L1MDa LINE L1 -2325 4215 2140 2142 99 11 0 chr4 193459764 193460046 -8868301 - AluSc SINE Alu -24 285 1 5142 239 62 90 chr4 193460046 193460550 -8867797 - L1MDa LINE L1 -4400 2140 1624 3530 143 22 26 chr4 193460662 193461285 -8867062 - L1MB3 LINE L1 -275 5908 5288 2521 65 3 13 chr4 193463143 193463452 -8864895 - AluSp SINE Alu -7 306 1 381 231 100 6 chr4 193463528 193463655 -8864692 - MIR SINE MIR -54 208 67 705 209 0 0 chr4 193464954 193465088 -8863259 + FRAM SINE Alu 39 172 -4 556 186 8 8 chr4 193465098 193465227 -8863120 + GA-rich Low_complexity Low_complexity 2 130 0 23 54 0 0 chr4 193466354 193466391 -8861956 + AT_rich Low_complexity Low_complexity 1 37 0 773 176 0 22 chr4 193466536 193466672 -8861675 + FLAM_A SINE Alu 1 133 0 2072 100 50 13 chr4 193466822 193467121 -8861226 + AluSx SINE Alu 1 310 -2 524 208 13 20 chr4 193467427 193467576 -8860771 - AluSg/x SINE Alu -31 278 131 881 226 58 45 chr4 193467781 193468091 -8860256 - L1MC4 LINE L1 -953 7089 6776 252 127 0 127 chr4 193468097 193468152 -8860195 - L1MC4 LINE L1 -1217 6825 6778 239 123 0 133 chr4 193468160 193468224 -8860123 - L1MC4 LINE L1 -1205 6825 6735 277 108 0 125 chr4 193468224 193468287 -8860060 - L1MC4 LINE L1 -1206 6824 6735 253 125 0 125 chr4 193468287 193468343 -8860004 - L1MC4 LINE L1 -1218 6824 6776 273 123 0 123 chr4 193468349 193468406 -8859941 - L1MC4 LINE L1 -1217 6825 6776 639 187 78 48 chr4 193468412 193468578 -8859769 - L1MC4a LINE L1 -1068 6740 6570 255 239 97 37 chr4 193468747 193468881 -8859466 - HAL1 LINE L1 -2315 192 51 180 0 0 0 chr4 193469868 193469888 -8858459 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 270 0 0 0 chr4 193471616 193471646 -8856701 + (CTG)n Simple_repeat Simple_repeat 3 32 0 624 144 12 126 chr4 193471824 193471991 -8856356 - L1PB4 LINE L1 -1 6155 6008 405 298 53 13 chr4 193474008 193474159 -8854188 - MIR3 SINE MIR -20 188 32 885 189 0 12 chr4 193474246 193474415 -8853932 - AluSg/x SINE Alu -9 303 137 482 186 0 44 chr4 193476165 193476278 -8852069 - MER3 DNA MER1_type -1 208 101 594 193 22 83 chr4 193476539 193476720 -8851627 - MER3 DNA MER1_type -86 123 1 2346 148 21 35 chr4 193476756 193477190 -8851157 + MSTA LTR MaLR 1 428 0 2433 79 13 0 chr4 193477577 193477882 -8850465 - AluSx SINE Alu -3 309 1 2562 47 3 0 chr4 193477931 193478230 -8850117 - AluY SINE Alu -11 300 1 2033 124 30 10 chr4 193478741 193479039 -8849308 - AluSx SINE Alu -8 304 1 216 354 21 0 chr4 193480109 193480205 -8848142 - L2 LINE L2 -925 2389 2292 224 240 0 0 chr4 193480206 193480256 -8848091 + GA-rich Low_complexity Low_complexity 2 51 0 463 103 51 0 chr4 193480519 193480597 -8847750 - AluSc SINE Alu -11 298 217 1046 244 142 52 chr4 193480701 193481263 -8847084 - L1MDb LINE L1 -5022 1387 775 390 42 0 0 chr4 193483645 193483693 -8844654 + (CA)n Simple_repeat Simple_repeat 1 48 0 1880 163 0 10 chr4 193483906 193484201 -8844146 + AluJo SINE Alu 1 292 -20 537 189 8 45 chr4 193484260 193484392 -8843955 + FLAM_C SINE Alu 1 127 -16 225 0 0 0 chr4 193485448 193485473 -8842874 + (TG)n Simple_repeat Simple_repeat 2 26 0 2337 96 0 0 chr4 193485863 193486154 -8842193 - AluSx SINE Alu -21 291 1 1030 266 32 1 chr4 193486766 193487201 -8841146 + MER119 DNA MER1_type 99 579 -4 2163 107 10 0 chr4 193487235 193487526 -8840821 + AluSx SINE Alu 1 294 -18 269 310 9 18 chr4 193487628 193487741 -8840606 - MIR SINE MIR -120 142 31 1073 230 121 52 chr4 193487858 193488280 -8840067 + MLT1C LTR MaLR 9 459 -8 33 66 0 0 chr4 193488458 193488519 -8839828 + AT_rich Low_complexity Low_complexity 1 61 0 2414 104 0 0 chr4 193488743 193489051 -8839296 - AluSx SINE Alu -4 308 1 1851 147 0 7 chr4 193489273 193489559 -8838788 - AluJb SINE Alu -14 298 15 212 254 32 0 chr4 193489849 193489912 -8838435 - MER5C DNA MER1_type -200 124 60 369 188 107 27 chr4 193491672 193491784 -8836563 + L1MC5 LINE L1 7804 7924 -37 1980 95 0 22 chr4 193491895 193492168 -8836179 + AluSg SINE Alu 44 310 0 278 365 41 15 chr4 193492211 193492408 -8835939 - L2 LINE L2 -46 3226 3025 1906 116 22 7 chr4 193492688 193492989 -8835358 + AluSg SINE Alu 1 305 0 182 250 21 0 chr4 193493117 193493165 -8835182 - L2 LINE L2 -1 3312 3264 341 305 230 0 chr4 193494432 193494632 -8833715 + MIR SINE MIR 2 247 -15 421 172 32 65 chr4 193494638 193494731 -8833616 + MER2 DNA MER2_type 1 90 -255 * 1496 174 33 99 chr4 193494730 193494881 -8833466 - MER2 DNA MER2_type -6 339 180 2081 114 3 10 chr4 193494881 193495179 -8833168 - AluSg SINE Alu -14 296 1 1496 174 33 99 chr4 193495179 193495390 -8832957 - MER2 DNA MER2_type -165 180 1 526 205 0 9 chr4 193495390 193495501 -8832846 + MER2 DNA MER2_type 97 206 -139 323 278 10 0 chr4 193495770 193495867 -8832480 + MIR SINE MIR 100 197 -65 2370 103 0 3 chr4 193496187 193496497 -8831850 + AluSq SINE Alu 1 309 -4 198 0 0 0 chr4 193496793 193496815 -8831532 + (T)n Simple_repeat Simple_repeat 1 22 0 784 111 15 37 chr4 193497026 193497161 -8831186 - FLAM_C SINE Alu 0 133 2 356 316 158 34 chr4 193497196 193497785 -8830562 + L2 LINE L2 2244 2905 -409 211 233 38 128 chr4 193498084 193498217 -8830130 - MER5A DNA MER1_type -19 170 50 192 40 0 0 chr4 193499012 193499037 -8829310 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 1119 219 39 83 chr4 193499325 193499685 -8828662 - MER2 DNA MER2_type 0 344 1 945 146 19 0 chr4 193499908 193500066 -8828281 - AluSp SINE Alu -16 297 137 452 253 82 75 chr4 193500218 193500510 -8827837 - L1ME4a LINE L1 -27 6094 5801 234 304 0 13 chr4 193500626 193500705 -8827642 - L1ME4a LINE L1 -478 5643 5566 2220 99 0 10 chr4 193502345 193502638 -8825709 - AluSc SINE Alu -16 293 4 180 155 35 17 chr4 193503219 193503277 -8825070 + CT-rich Low_complexity Low_complexity 1 59 0 532 214 0 18 chr4 193504417 193504529 -8823818 - FLAM_C SINE Alu -2 141 32 948 319 89 17 chr4 193505414 193506004 -8822343 - ERVL LTR ERVL -1605 3880 3232 510 162 20 10 chr4 193506016 193506115 -8822232 - L1MB3 LINE L1 0 6183 6084 782 158 44 25 chr4 193507182 193507340 -8821007 - FRAM SINE Alu -10 166 6 219 222 139 56 chr4 193507506 193507614 -8820733 - L2 LINE L2 -2 3311 3195 393 277 151 6 chr4 193508791 193508950 -8819397 + MIR SINE MIR 13 194 -68 2306 93 3 37 chr4 193512576 193512900 -8815447 - AluSp SINE Alu 0 313 1 2380 92 0 0 chr4 193514238 193514541 -8813806 + AluSg SINE Alu 1 303 -7 293 266 14 91 chr4 193515026 193515169 -8813178 - L2 LINE L2 0 3313 3182 2647 10 17 3 chr4 193515754 193516055 -8812292 + AluY SINE Alu 1 305 -6 1223 83 2 1 chr4 193516261 193516430 -8811917 - AluSp/q SINE Alu -7 306 155 2189 99 0 20 chr4 193516473 193516777 -8811570 + AluSg SINE Alu 1 298 -12 500 228 12 72 chr4 193517522 193517652 -8810695 + MER103 DNA DNA 10 129 -37 3160 52 0 0 chr4 193517652 193518015 -8810332 + L1PA7 LINE L1 5792 6154 0 500 228 12 72 chr4 193518015 193518051 -8810296 + MER103 DNA DNA 129 166 0 276 217 142 104 chr4 193518361 193518390 -8809957 - MIR SINE MIR -94 168 142 2224 107 0 0 chr4 193518390 193518680 -8809667 - AluSx SINE Alu -22 290 1 276 217 142 104 chr4 193518680 193518756 -8809591 - MIR SINE MIR -120 142 59 2284 106 0 3 chr4 193519091 193519402 -8808945 - AluSg SINE Alu 0 310 1 1551 104 0 0 chr4 193519545 193519773 -8808574 - AluSg/x SINE Alu 0 306 79 313 95 0 0 chr4 193519773 193519815 -8808532 - Alu SINE Alu -259 42 1 1102 270 104 43 chr4 193519838 193520512 -8807835 - HAL1 LINE L1 -110 2397 1683 383 289 106 38 chr4 193520784 193521019 -8807328 - HAL1 LINE L1 -1944 563 313 2095 259 74 43 chr4 193521094 193521179 -8807168 - L1MC4 LINE L1 -27 8015 7934 826 58 16 0 chr4 193521179 193521300 -8807047 + (TCTA)n Simple_repeat Simple_repeat 2 124 0 2095 259 74 43 chr4 193521300 193521788 -8806559 - L1MC4 LINE L1 -108 7934 7402 1511 28 45 0 chr4 193521788 193522002 -8806345 + L1PA5 LINE L1 5952 6173 0 2095 259 74 43 chr4 193522002 193522294 -8806053 - L1MC4 LINE L1 -640 7402 7121 333 0 0 0 chr4 193522737 193522774 -8805573 + (T)n Simple_repeat Simple_repeat 1 37 0 1980 103 31 3 chr4 193523591 193523881 -8804466 - AluSq SINE Alu -15 298 1 610 313 35 16 chr4 193523896 193524152 -8804195 - MIR SINE MIR 0 262 2 390 189 36 19 chr4 193526743 193526849 -8801498 - MIR3 SINE MIR -5 203 96 288 0 0 0 chr4 193527448 193527480 -8800867 + (T)n Simple_repeat Simple_repeat 1 32 0 34 55 0 0 chr4 193528864 193528919 -8799428 + AT_rich Low_complexity Low_complexity 1 55 0 783 311 130 8 chr4 193529141 193529867 -8798480 - L2 LINE L2 0 3313 2488 1830 156 14 0 chr4 193530711 193530993 -8797354 - AluJb SINE Alu -26 286 1 297 182 0 0 chr4 193531024 193531068 -8797279 + Alu SINE Alu 1 44 -258 894 147 64 0 chr4 193531068 193531224 -8797123 + AluJo/FRAM SINE Alu 146 311 -1 190 246 134 70 chr4 193532954 193533096 -8795251 + L2 LINE L2 3163 3313 0 396 277 93 79 chr4 193534094 193534437 -8793910 - Charlie8 DNA MER1_type -2061 356 9 277 217 7 158 chr4 193534554 193534706 -8793641 - MLT1H LTR MaLR 0 549 421 1129 202 52 0 chr4 193535725 193535938 -8792409 + MER58A DNA MER1_type 1 224 0 230 179 0 15 chr4 193536026 193536093 -8792254 + CT-rich Low_complexity Low_complexity 3 68 0 2591 46 0 3 chr4 193536465 193536769 -8791578 + AluY SINE Alu 1 303 -8 1966 139 7 7 chr4 193537325 193537626 -8790721 + AluSx SINE Alu 1 301 -11 1456 126 114 16 chr4 193538611 193538865 -8789482 + AluJb SINE Alu 34 312 0 2463 32 0 0 chr4 193538914 193539195 -8789152 + AluYa5 SINE Alu 31 311 0 533 216 125 48 chr4 193539589 193539747 -8788600 - MIR SINE MIR -6 256 77 1531 222 38 43 chr4 193539747 193540139 -8788208 - MLT1B LTR MaLR 0 390 1 533 216 125 48 chr4 193540139 193540188 -8788159 - MIR SINE MIR -185 77 33 387 206 27 0 chr4 193540226 193540299 -8788048 - MER116 DNA Mariner -3 77 3 25 31 0 0 chr4 193544683 193544715 -8783632 + AT_rich Low_complexity Low_complexity 1 32 0 228 67 0 0 chr4 193544839 193544869 -8783478 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1070 156 13 15 chr4 193546046 193546283 -8782064 - AluJo SINE Alu -21 291 1 234 62 0 0 chr4 193546359 193546391 -8781956 + (A)n Simple_repeat Simple_repeat 1 32 0 220 216 0 0 chr4 193547115 193547152 -8781195 + L2 LINE L2 3220 3256 -16 201 213 13 107 chr4 193547348 193547423 -8780924 - MIR SINE MIR -70 192 125 240 59 0 0 chr4 193547594 193547628 -8780719 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 1879 144 7 0 chr4 193548191 193548482 -8779865 + AluJb SINE Alu 17 309 -3 269 85 0 51 chr4 193549759 193549818 -8778529 + (A)n Simple_repeat Simple_repeat 1 56 0 527 256 194 16 chr4 193556028 193556348 -8771999 - MARNA DNA Mariner -180 406 30 378 74 0 0 chr4 193557389 193557443 -8770904 + (TGGA)n Simple_repeat Simple_repeat 4 57 0 1803 123 79 7 chr4 193557681 193557958 -8770389 - AluSx SINE Alu -15 297 1 5275 170 98 80 chr4 193558420 193559006 -8769341 - L1MC3 LINE L1 -1 7784 7210 256 307 68 0 chr4 193559006 193559094 -8769253 - MLT1F1 LTR MaLR -442 125 32 5275 170 98 80 chr4 193559094 193559785 -8768562 - L1MC3 LINE L1 -575 7210 6395 213 296 10 92 chr4 193560094 193560192 -8768155 + L2 LINE L2 2970 3059 -213 238 211 18 0 chr4 193561766 193561823 -8766524 + L1ME4a LINE L1 6060 6117 -4 1880 98 8 4 chr4 193561878 193562124 -8766223 + AluSx SINE Alu 12 258 -54 388 271 70 23 chr4 193562796 193563010 -8765337 - HAL1 LINE L1 -1304 1203 980 1505 191 112 64 chr4 193613898 193614337 -8714010 + MER31B LTR ERV1 3 462 -4 457 137 24 40 chr4 193614338 193614462 -8713885 + CT-rich Low_complexity Low_complexity 1 122 0 931 249 49 55 chr4 193615444 193615681 -8712666 - L1MC5 LINE L1 -167 7794 7557 2151 142 0 0 chr4 193615681 193615992 -8712355 + AluJb SINE Alu 1 311 -1 931 249 49 55 chr4 193615992 193616260 -8712087 - L1MC5 LINE L1 -404 7557 7292 250 244 160 45 chr4 193616228 193616384 -8711963 - L1MC4 LINE L1 -550 7492 7319 * 1856 249 98 11 chr4 193616550 193617092 -8711255 - MLT1G1 LTR MaLR -5 590 2 222 331 81 48 chr4 193617326 193617658 -8710689 - L2 LINE L2 -20 3293 2951 2004 109 36 13 chr4 193618434 193618738 -8709609 - AluSx SINE Alu -1 311 1 361 258 58 25 chr4 193618738 193618858 -8709489 + L1ME LINE L1 5588 5711 -410 243 264 42 0 chr4 193619214 193619286 -8709061 - L3 LINE CR1 -5 1572 1498 1429 86 0 0 chr4 193619669 193619856 -8708491 - AluSg/x SINE Alu -10 302 116 375 330 98 0 chr4 193620025 193620198 -8708149 - MIR SINE MIR -21 241 52 191 156 62 78 chr4 193620374 193620438 -8707909 + MIR3 SINE MIR 107 169 -39 857 141 0 15 chr4 193621488 193621623 -8706724 - FLAM_C SINE Alu 0 133 1 329 284 90 22 chr4 193621623 193621750 -8706597 - MIR SINE MIR -80 182 44 288 346 25 38 chr4 193621801 193621960 -8706387 - MIR SINE MIR -4 258 102 26092 168 16 20 chr4 193622483 193628696 -8699651 + L1PA10 LINE L1 241 6486 0 291 175 0 0 chr4 193629142 193629199 -8699148 + (CA)n Simple_repeat Simple_repeat 2 58 0 262 333 48 24 chr4 193629227 193629353 -8698994 + L1MEd LINE L1 563 691 -5428 836 266 91 36 chr4 193629390 193629839 -8698508 + MLT1J1 LTR MaLR 3 441 -5 335 250 80 60 chr4 193629850 193630186 -8698161 + L1MEd LINE L1 737 1079 -5040 977 219 143 48 chr4 193630214 193630593 -8697754 + MLT1C LTR MaLR 53 467 0 342 338 20 33 chr4 193630594 193630745 -8697602 + L1MEd LINE L1 1078 1226 -4893 953 259 65 58 chr4 193631128 193631712 -8696635 + L1MC4 LINE L1 7455 8042 0 872 228 11 45 chr4 193631705 193631973 -8696374 + L1ME1 LINE L1 5764 6022 -144 * 260 337 167 11 chr4 193631973 193632237 -8696110 - L2 LINE L2 -1131 2183 1879 482 283 33 38 chr4 193632306 193632490 -8695857 + L2 LINE L2 2622 2804 -510 1176 283 103 21 chr4 193632503 193632930 -8695417 - LTR16B LTR ERVL -2 462 1 1449 254 103 13 chr4 193632939 193633387 -8694960 + L2 LINE L2 2826 3313 0 180 100 75 25 chr4 193633407 193633447 -8694900 + L2 LINE L2 3231 3272 0 294 116 145 0 chr4 193633465 193633534 -8694813 - L2 LINE L2 -42 3271 3193 239 329 66 29 chr4 193635208 193635345 -8693002 - MIR3 SINE MIR -52 156 15 197 263 138 38 chr4 193636149 193636229 -8692118 - L2 LINE L2 -19 3294 3207 610 291 29 0 chr4 193636726 193636898 -8691449 + MIR SINE MIR 59 235 -27 453 312 7 7 chr4 193637033 193637174 -8691173 + MIR3 SINE MIR 3 143 -65 4108 190 64 47 chr4 193637201 193639188 -8689159 + L1MB7 LINE L1 4156 6183 -1 864 216 17 6 chr4 193639980 193640156 -8688191 - MER45A DNA AcHobo 0 178 1 337 123 0 0 chr4 193640545 193640602 -8687745 - L1MB4 LINE L1 0 6180 6124 2547 87 0 6 chr4 193640821 193641166 -8687181 - L1PA13 LINE L1 -3 6160 5818 1503 136 22 11 chr4 193641166 193641439 -8686908 - L1MB3 LINE L1 -57 6126 5851 209 323 115 68 chr4 193641790 193642069 -8686278 + L2 LINE L2 2894 3185 -87 548 266 63 34 chr4 193648327 193648534 -8679813 + MLT1I LTR MaLR 195 407 -2 219 278 42 0 chr4 193648574 193648646 -8679701 - MIR SINE MIR -59 203 129 2054 117 0 23 chr4 193648660 193648967 -8679380 + AluSx SINE Alu 3 302 -10 1266 222 77 9 chr4 193649076 193649414 -8678933 + MLT1C LTR MaLR 2 362 -105 2113 171 0 0 chr4 193649526 193649860 -8678487 - MLT1B LTR MaLR -55 335 2 2066 105 3 10 chr4 193650507 193650802 -8677545 - AluSq SINE Alu -20 293 1 269 288 121 73 chr4 193651008 193651431 -8676916 - L2 LINE L2 -410 2904 2462 209 357 0 0 chr4 193651577 193651661 -8676686 - L2 LINE L2 -1455 1859 1776 2562 16 7 0 chr4 193651820 193652123 -8676224 - AluY SINE Alu -6 305 1 211 369 77 8 chr4 193652596 193652726 -8675621 + MIR SINE MIR 19 157 -105 1156 201 110 19 chr4 193653329 193653638 -8674709 - MLT1B LTR MaLR 0 390 54 43430 34 22 1 chr4 193653798 193659821 -8668526 + L1PA3 LINE L1 3 6155 0 3510 65 0 0 chr4 193660124 193660581 -8667766 + L1PA8 LINE L1 5718 6174 0 1474 171 15 0 chr4 193664429 193664693 -8663654 + AluJo SINE Alu 35 302 -10 194 256 0 0 chr4 193664695 193664738 -8663609 + MIR SINE MIR 220 262 0 35 24 0 0 chr4 193665048 193665090 -8663257 + AT_rich Low_complexity Low_complexity 1 42 0 693 143 48 4 chr4 193665179 193665420 -8662927 + GA-rich Low_complexity Low_complexity 1 251 0 1781 263 7 27 chr4 193665538 193666237 -8662110 - L1P3 LINE L1 -4647 1814 1127 1413 173 8 4 chr4 193666502 193666739 -8661608 + MLT1D LTR MaLR 268 505 0 1245 249 102 42 chr4 193667149 193667630 -8660717 + MLT1J LTR MaLR 2 511 0 594 272 40 51 chr4 193667954 193668230 -8660117 - MER46C DNA MER2_type 0 338 66 2300 93 0 0 chr4 193668411 193668721 -8659626 + AluY SINE Alu 1 310 -1 413 338 34 19 chr4 193668836 193669043 -8659304 + HAL1b LINE L1 378 587 -761 1867 246 119 26 chr4 193669103 193669717 -8658630 + L1MEc LINE L1 34 704 -5692 753 170 140 0 chr4 193669731 193669902 -8658445 - Tigger2 DNA MER2_type -2174 544 350 281 106 414 0 chr4 193670774 193670878 -8657469 - Tigger2 DNA MER2_type -2353 365 219 1379 144 4 0 chr4 193670878 193671107 -8657240 - AluSp SINE Alu -83 230 1 328 125 0 0 chr4 193671113 193671169 -8657178 - Tigger2 DNA MER2_type -2607 111 56 511 169 39 23 chr4 193671176 193671306 -8657041 + AluSc SINE Alu 2 133 -176 1966 123 0 7 chr4 193671477 193671770 -8656577 + AluSx SINE Alu 12 302 -10 22 70 0 0 chr4 193672018 193672061 -8656286 + AT_rich Low_complexity Low_complexity 1 43 0 1492 94 0 0 chr4 193673022 193673223 -8655124 - AluSx SINE Alu -111 201 1 511 295 67 57 chr4 193674289 193674403 -8653944 - MER102b DNA MER1_type -1091 337 226 1900 143 52 85 chr4 193674403 193674457 -8653890 - MSTB1 LTR MaLR 0 432 378 180 0 0 0 chr4 193674457 193674477 -8653870 + (TA)n Simple_repeat Simple_repeat 1 20 0 1900 143 52 85 chr4 193674477 193674868 -8653479 - MSTB1 LTR MaLR -54 378 2 511 295 67 57 chr4 193674868 193674945 -8653402 - MER102b DNA MER1_type -1202 226 151 2332 74 0 0 chr4 193674945 193675242 -8653105 - AluY SINE Alu -14 297 1 511 295 67 57 chr4 193675242 193675364 -8652983 - MER102b DNA MER1_type -1277 151 20 354 278 49 41 chr4 193676201 193676385 -8651962 - MIR SINE MIR -69 139 7 710 180 106 6 chr4 193676421 193676582 -8651765 + MLT1B LTR MaLR 1 177 -213 1504 189 0 40 chr4 193676583 193676905 -8651442 + AluJo SINE Alu 1 309 -3 770 146 0 49 chr4 193676910 193677095 -8651252 + (GGAGAA)n Simple_repeat Simple_repeat 3 178 0 526 245 67 85 chr4 193677102 193677384 -8650963 + MLT1B LTR MaLR 174 450 -17 823 255 47 0 chr4 193677802 193678014 -8650333 - L1MC1 LINE L1 -1 6332 6111 195 290 81 0 chr4 193678124 193678186 -8650161 - MIR SINE MIR -112 96 30 414 0 0 0 chr4 193678259 193678305 -8650042 + (CA)n Simple_repeat Simple_repeat 2 47 0 196 289 24 48 chr4 193678315 193678398 -8649949 + L2 LINE L2 3191 3271 -1 3228 132 20 70 chr4 193680221 193680863 -8647484 - MER4B LTR ERV1 0 610 1 222 341 24 0 chr4 193681021 193681103 -8647244 - L2 LINE L2 -5 3267 3184 1731 199 127 5 chr4 193681126 193681529 -8646818 - MLT1C LTR MaLR 0 467 16 404 323 35 49 chr4 193681606 193681989 -8646358 - L2 LINE L2 -187 3085 2713 203 182 0 0 chr4 193682301 193682334 -8646013 + (TTG)n Simple_repeat Simple_repeat 1 33 0 257 35 0 0 chr4 193682681 193682710 -8645637 - MER96 DNA MER1_type? -96 79 51 1221 21 0 0 chr4 193683678 193683822 -8644525 + (TCCA)n Simple_repeat Simple_repeat 3 146 0 1643 136 8 15 chr4 193684072 193684336 -8644011 + Tigger2a DNA MER2_type 1 262 -172 4723 143 56 26 chr4 193684336 193684403 -8643944 + Tigger3b DNA MER2_type 2 66 -2962 2251 100 0 16 chr4 193684403 193684576 -8643771 - AluSx SINE Alu -6 306 139 2236 41 0 0 chr4 193684576 193684842 -8643505 - AluY SINE Alu -4 307 42 2251 100 0 16 chr4 193684842 193684979 -8643368 - AluSx SINE Alu -173 139 1 4723 143 56 26 chr4 193684979 193685422 -8642925 + Tigger3b DNA MER2_type 66 494 -2534 2068 118 3 0 chr4 193685422 193685719 -8642628 - AluSp SINE Alu -15 298 1 4723 143 56 26 chr4 193685719 193686106 -8642241 + Tigger3b DNA MER2_type 494 927 -304 369 294 75 35 chr4 193686173 193686401 -8641946 - MIR SINE MIR -14 248 12 1193 194 4 22 chr4 193686405 193686632 -8641715 - MER58A DNA MER1_type -1 223 1 279 0 0 0 chr4 193686747 193686778 -8641569 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 2116 106 7 7 chr4 193686780 193687083 -8641264 + AluSg SINE Alu 1 303 -7 873 196 17 46 chr4 193687083 193687323 -8641024 - L1ME1 LINE L1 -95 6140 5908 9435 239 48 34 chr4 193687332 193691775 -8636572 - L1ME1 LINE L1 -990 5225 692 1564 159 36 7 chr4 193692003 193692280 -8636067 - AluJb SINE Alu -14 298 14 1844 137 10 0 chr4 193692750 193693043 -8635304 - AluSc SINE Alu -6 303 8 2891 134 42 2 chr4 193693350 193693804 -8634543 - MER101 LTR ERV1 -2 472 1 358 272 183 3 chr4 193693874 193694030 -8634317 - MIR SINE MIR -63 145 14 325 206 0 0 chr4 193695447 193695510 -8632837 - MER94 DNA DNA -46 88 26 4412 173 19 42 chr4 193697351 193698405 -8629942 + L1PB4 LINE L1 5103 6144 -12 297 188 62 18 chr4 193698999 193699111 -8629236 + HsTC2 DNA Tc2 1703 1819 -79 858 267 64 21 chr4 193699151 193699432 -8628915 + HsTC2 DNA Tc2 1265 1557 -341 280 256 12 47 chr4 193699437 193699523 -8628824 + LTR37B LTR ERV1 7 89 -379 1862 104 0 0 chr4 193699534 193699813 -8628534 - AluSx SINE Alu 0 311 33 293 306 27 18 chr4 193702135 193702354 -8625993 - L1ME4a LINE L1 -223 5898 5678 930 280 145 18 chr4 193702639 193703086 -8625261 - L1MC4a LINE L1 -1930 5878 5375 2236 104 0 3 chr4 193703098 193703405 -8624942 - AluSx SINE Alu -6 306 1 1383 169 39 84 chr4 193703483 193703838 -8624509 - MER44D DNA MER2_type 0 609 1 234 0 0 0 chr4 193703850 193703876 -8624471 + (TG)n Simple_repeat Simple_repeat 1 26 0 431 325 92 50 chr4 193703940 193704257 -8624090 - L1ME4a LINE L1 -2225 5583 5254 2065 129 55 67 chr4 193704411 193704844 -8623503 + MSTA LTR MaLR 1 428 0 1041 128 0 0 chr4 193705156 193705336 -8623011 + (TG)n Simple_repeat Simple_repeat 1 180 0 402 85 0 0 chr4 193705410 193705469 -8622878 + (TG)n Simple_repeat Simple_repeat 1 59 0 677 85 9 0 chr4 193705519 193705625 -8622722 + (TG)n Simple_repeat Simple_repeat 1 107 0 345 109 0 0 chr4 193705679 193705743 -8622604 + (TG)n Simple_repeat Simple_repeat 1 64 0 373 289 87 35 chr4 193706003 193706176 -8622171 + MIR SINE MIR 13 194 -68 282 275 101 9 chr4 193706971 193707080 -8621267 + MIR SINE MIR 40 158 -104 2711 213 15 4 chr4 193707119 193707654 -8620693 + MER74A LTR ERVL 6 546 -12 1458 239 33 19 chr4 193707655 193708015 -8620332 - MLT1A1 LTR MaLR 0 365 1 532 240 45 7 chr4 193708032 193708186 -8620161 + MLT1D LTR MaLR 36 195 -310 266 265 48 0 chr4 193709175 193709258 -8619089 + CT-rich Low_complexity Low_complexity 2 88 0 181 240 140 0 chr4 193709999 193710049 -8618298 + L3b LINE CR1 1417 1473 -110 1902 95 20 56 chr4 193712563 193712891 -8615456 + AluSx SINE Alu 1 312 0 347 289 70 16 chr4 193713664 193713792 -8614555 + MIR SINE MIR 125 259 -3 295 259 223 0 chr4 193713906 193714018 -8614329 + MIR SINE MIR 120 256 -6 476 262 52 77 chr4 193715172 193715405 -8612942 + LTR33A LTR ERVL 1 227 -296 616 254 27 22 chr4 193715680 193715865 -8612482 + LTR33A LTR ERVL 329 514 -9 387 0 0 0 chr4 193716207 193716250 -8612097 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1808 137 0 14 chr4 193716250 193716535 -8611812 - AluJb SINE Alu -31 281 1 1847 139 107 73 chr4 193716535 193716973 -8611374 - LTR54B LTR ERV1 -45 453 1 773 262 101 68 chr4 193716982 193717466 -8610881 + MLT1H LTR MaLR 37 536 -13 213 178 44 0 chr4 193717591 193717636 -8610711 - MIR SINE MIR -149 113 67 2683 219 19 78 chr4 193717913 193718217 -8610130 - L1ME1 LINE L1 -6 6229 5909 2180 112 0 0 chr4 193718217 193718521 -8609826 + AluSx SINE Alu 1 304 -8 2683 219 19 78 chr4 193718521 193718961 -8609386 - L1ME1 LINE L1 -326 5909 5532 1930 112 30 10 chr4 193718961 193719266 -8609081 + AluY SINE Alu 1 311 0 2683 219 19 78 chr4 193719266 193719313 -8609034 - L1ME1 LINE L1 -703 5532 5484 4319 118 2 23 chr4 193719315 193719837 -8608510 + MER41B LTR ERV1 1 423 -134 1862 148 0 0 chr4 193719837 193720163 -8608184 - AluSx SINE Alu 0 326 1 4319 118 2 23 chr4 193720163 193720296 -8608051 + MER41B LTR ERV1 423 557 0 1939 213 59 29 chr4 193720299 193720849 -8607498 - L1ME1 LINE L1 -746 5469 4920 1068 180 42 87 chr4 193720857 193721307 -8607040 + LOR1a LTR ERV1 1 488 -9 2447 198 53 19 chr4 193721315 193721896 -8606451 - L1ME1 LINE L1 -1300 4915 4315 3396 271 51 11 chr4 193721910 193723013 -8605334 - L1ME1 LINE L1 -5182 1214 68 2116 128 36 22 chr4 193723029 193723388 -8604959 - THE1B LTR MaLR 0 364 1 1171 185 10 35 chr4 193723399 193723756 -8604591 - MER31B LTR ERV1 0 466 5 886 123 8 0 chr4 193723760 193723890 -8604457 - MER31B-int LTR ERV1 -20 4916 4786 * 3338 181 39 98 chr4 193723886 193724799 -8603548 - MER31B-int LTR ERV1 -263 4673 3814 737 45 0 0 chr4 193724829 193724917 -8603430 - L1P LINE L1 -6048 98 11 1853 207 56 26 chr4 193724926 193725052 -8603295 - MER31B-int LTR ERV1 -1127 3809 3688 2548 130 23 28 chr4 193725052 193725249 -8603098 + MSTA LTR MaLR 1 197 -231 2384 87 3 0 chr4 193725249 193725548 -8602799 + AluSp SINE Alu 1 300 -13 2548 130 23 28 chr4 193725548 193725780 -8602567 + MSTA LTR MaLR 197 428 0 1853 207 56 26 chr4 193725780 193726116 -8602231 - MER31B-int LTR ERV1 -1248 3688 3333 1140 169 155 58 chr4 193726151 193726429 -8601918 - MER31B LTR ERV1 -161 305 1 2048 96 0 4 chr4 193727027 193727297 -8601050 + AluSg SINE Alu 37 305 -5 2296 122 0 0 chr4 193728411 193728714 -8599633 - AluSx SINE Alu -9 303 1 1202 241 50 57 chr4 193729640 193730187 -8598160 - MER39 LTR ERV1 -1 706 1 318 271 107 14 chr4 193730187 193730327 -8598020 + MIR SINE MIR 100 252 -10 21 0 0 0 chr4 193730340 193730361 -8597986 + AT_rich Low_complexity Low_complexity 1 21 0 298 267 76 0 chr4 193731512 193731617 -8596730 - MIR SINE MIR -122 140 28 2074 137 3 7 chr4 193731704 193732010 -8596337 - AluSx SINE Alu -7 305 1 472 206 212 95 chr4 193732217 193732721 -8595626 - MER34B LTR ERV1 0 565 3 248 314 10 29 chr4 193732953 193733055 -8595292 - MIR SINE MIR -115 147 48 1182 176 8 45 chr4 193733060 193733304 -8595043 - MLT2D LTR ERVL 0 414 180 371 127 0 0 chr4 193733304 193733359 -8594988 - MER4A LTR ERV1 0 664 610 1336 128 0 0 chr4 193733359 193733546 -8594801 + AluSg/x SINE Alu 126 312 0 1665 120 3 25 chr4 193733546 193733854 -8594493 - MER4A LTR ERV1 -44 620 261 609 135 21 0 chr4 193733854 193733950 -8594397 - MER4A LTR ERV1 -566 98 1 * 792 203 43 5 chr4 193733950 193734124 -8594223 - MLT2D LTR ERVL -231 183 3 2183 72 4 25 chr4 193734364 193734665 -8593682 - AluY SINE Alu 0 311 16 24 0 0 0 chr4 193734961 193734985 -8593362 + AT_rich Low_complexity Low_complexity 1 24 0 1821 177 47 58 chr4 193735257 193735619 -8592728 - L1MB4 LINE L1 -1 6179 5814 2366 101 0 0 chr4 193735619 193735927 -8592420 - AluSc SINE Alu -1 308 1 1821 177 47 58 chr4 193735927 193735985 -8592362 - L1MB4 LINE L1 -366 5814 5768 2305 116 0 10 chr4 193735985 193736295 -8592052 - AluSg SINE Alu -3 307 1 1821 177 47 58 chr4 193736295 193736328 -8592019 - L1MB4 LINE L1 -412 5768 5736 2625 119 5 10 chr4 193736680 193737075 -8591272 + L1PA15 LINE L1 5773 6165 0 207 0 0 0 chr4 193737109 193737132 -8591215 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 252 0 0 0 chr4 193737131 193737159 -8591188 + (TA)n Simple_repeat Simple_repeat 1 28 0 2295 98 0 0 chr4 193737160 193737447 -8590900 - AluSc SINE Alu -22 287 1 225 238 0 0 chr4 193737556 193737657 -8590690 + G-rich Low_complexity Low_complexity 1 101 0 232 304 143 9 chr4 193738849 193738961 -8589386 - MIR SINE MIR -108 154 28 1986 105 4 0 chr4 193739685 193739951 -8588396 + AluSx SINE Alu 35 301 -11 2504 140 5 8 chr4 193741021 193741422 -8586925 + L1PA16 LINE L1 5767 6166 0 1916 191 125 2 chr4 193741800 193742249 -8586098 - MLT1D LTR MaLR 0 505 2 1808 161 0 7 chr4 193742546 193742855 -8585492 + AluJo SINE Alu 1 307 0 1243 265 97 26 chr4 193743473 193743961 -8584386 + MLT1G LTR MaLR 1 500 -90 2239 108 0 7 chr4 193743961 193744246 -8584101 + AluSg SINE Alu 2 286 -24 201 39 0 0 chr4 193744246 193744272 -8584075 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2239 108 0 7 chr4 193744272 193744283 -8584064 + AluSg SINE Alu 286 296 -14 1243 265 97 26 chr4 193744283 193744368 -8583979 + MLT1G LTR MaLR 500 578 -12 1958 152 3 3 chr4 193744579 193744881 -8583466 + AluJb SINE Alu 1 302 -10 249 33 0 0 chr4 193745192 193745222 -8583125 + (CA)n Simple_repeat Simple_repeat 2 31 0 1763 151 55 0 chr4 193745758 193746029 -8582318 + AluJb SINE Alu 1 286 -26 496 283 140 0 chr4 193746322 193746622 -8581725 - MLT1J1 LTR MaLR -6 440 99 235 337 160 6 chr4 193747314 193747495 -8580852 - MIR SINE MIR -4 258 50 1893 160 0 0 chr4 193748606 193748888 -8579459 + AluJb SINE Alu 1 282 -30 299 128 0 0 chr4 193749593 193749640 -8578707 - MLT2A1 LTR ERVL -8 436 390 242 71 0 0 chr4 193749641 193749683 -8578664 - LTR66 LTR ERVL -171 439 398 211 205 0 0 chr4 193749683 193749722 -8578625 + (TATATG)n Simple_repeat Simple_repeat 5 43 0 231 200 77 0 chr4 193749722 193749787 -8578560 - L1MCa LINE L1 -4362 2064 1995 339 211 0 0 chr4 193749790 193749880 -8578467 + (TA)n Simple_repeat Simple_repeat 1 90 0 477 110 0 0 chr4 193750035 193750108 -8578239 + (TA)n Simple_repeat Simple_repeat 1 73 0 3071 74 18 3 chr4 193750109 193750501 -8577846 - MLT2A2 LTR ERVL -55 398 1 1658 174 28 11 chr4 193751078 193751365 -8576982 - AluJb SINE Alu -20 292 1 268 324 77 35 chr4 193751367 193751888 -8576459 - L1M4 LINE L1 -3417 2729 2187 204 135 58 19 chr4 193752226 193752278 -8576069 + CT-rich Low_complexity Low_complexity 2 55 0 2308 126 36 6 chr4 193752402 193752766 -8575581 - THE1C LTR MaLR 0 375 1 572 283 31 9 chr4 193752858 193753084 -8575263 - HAL1b LINE L1 -756 592 362 1536 223 83 39 chr4 193753085 193753569 -8574778 + MLT1D LTR MaLR 1 505 0 333 0 0 0 chr4 193753585 193753622 -8574725 + (TG)n Simple_repeat Simple_repeat 2 38 0 314 361 79 17 chr4 193753652 193753893 -8574454 - HAL1b LINE L1 -1034 314 59 26 0 0 0 chr4 193754269 193754295 -8574052 + AT_rich Low_complexity Low_complexity 1 26 0 252 284 49 31 chr4 193755345 193755507 -8572840 - HAL1b LINE L1 -516 832 668 1001 125 0 0 chr4 193755964 193756100 -8572247 - AluSg/x SINE Alu -14 298 163 394 279 94 52 chr4 193756935 193757168 -8571179 - MIR SINE MIR 0 262 20 2207 105 10 10 chr4 193757881 193758187 -8570160 + AluSx SINE Alu 1 306 -6 452 253 93 39 chr4 193758222 193758404 -8569943 - MIR SINE MIR -58 204 13 1963 166 33 0 chr4 193758910 193759242 -8569105 - MLT1A1 LTR MaLR -22 343 1 2150 141 32 19 chr4 193759394 193759764 -8568583 + THE1C LTR MaLR 1 375 0 1879 118 45 24 chr4 193760421 193760709 -8567638 + AluJb SINE Alu 1 294 -18 246 313 174 10 chr4 193761010 193761211 -8567136 - MIR SINE MIR -17 245 12 322 311 11 11 chr4 193761415 193761505 -8566842 + LTR67 LTR ERVL 111 200 -357 814 299 94 18 chr4 193761868 193762252 -8566095 + HsTC2 DNA Tc2 477 889 -1009 366 107 0 0 chr4 193762382 193762438 -8565909 + (TC)n Simple_repeat Simple_repeat 2 57 0 2364 85 3 16 chr4 193762448 193762754 -8565593 - AluSp SINE Alu -11 302 1 247 281 0 0 chr4 193762754 193762808 -8565539 + CT-rich Low_complexity Low_complexity 8 64 0 199 343 39 0 chr4 193763146 193763248 -8565099 - MIR3 SINE MIR -6 202 97 636 245 7 0 chr4 193763309 193763456 -8564891 + L2 LINE L2 2910 3057 -256 1716 173 39 21 chr4 193763459 193763794 -8564553 + MER34C LTR ERV1 7 347 -238 576 188 123 32 chr4 193763794 193763948 -8564399 - L1ME LINE L1 -621 5545 5378 277 167 0 0 chr4 193763960 193764008 -8564339 + MER103 DNA DNA 38 85 -81 1151 255 88 35 chr4 193764118 193764628 -8563719 + MER34 LTR ERV1 1 537 -5 3408 132 10 2 chr4 193764947 193765455 -8562892 + MER41E LTR ERV1 1 512 0 251 268 0 14 chr4 193766290 193766361 -8561986 - L2 LINE L2 -1 3312 3243 1701 204 125 13 chr4 193766729 193767112 -8561235 + MSTB LTR MaLR 1 426 0 191 36 36 0 chr4 193767113 193767141 -8561206 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 284 339 25 8 chr4 193767332 193767453 -8560894 - MER91A DNA MER1_type -3 193 71 1468 207 19 24 chr4 193768138 193768486 -8559861 - MER47B DNA MER2_type 0 418 20 1697 232 128 27 chr4 193768725 193769247 -8559100 + MLT1G LTR MaLR 16 590 0 347 182 15 0 chr4 193769388 193769454 -8558893 - MLT1D LTR MaLR -2 503 437 * 2565 252 47 16 chr4 193769453 193770015 -8558332 + MER69 DNA AcHobo 71 661 -565 2705 145 19 2 chr4 193770015 193770435 -8557912 + MSTA LTR MaLR 2 428 0 2565 252 47 16 chr4 193770435 193770579 -8557768 + MER69 DNA AcHobo 661 799 -427 1396 218 46 75 chr4 193770584 193771107 -8557240 + MER69 DNA AcHobo 2019 2526 0 1447 153 91 63 chr4 193771987 193772403 -8555944 - MSTA LTR MaLR 0 426 1 234 0 0 0 chr4 193772938 193772964 -8555383 + (CA)n Simple_repeat Simple_repeat 1 26 0 1387 169 39 84 chr4 193772976 193773331 -8555016 + MER44D DNA MER2_type 1 609 0 236 258 45 15 chr4 193773336 193773402 -8554945 + L1ME4a LINE L1 5605 5672 -449 2401 105 0 0 chr4 193773409 193773715 -8554632 + AluSx SINE Alu 1 306 -6 923 280 145 18 chr4 193773727 193774174 -8554173 + L1MC4a LINE L1 5375 5878 -1930 339 301 27 18 chr4 193774459 193774678 -8553669 + L1ME4a LINE L1 5678 5898 -223 1969 101 0 8 chr4 193776995 193777280 -8551067 + AluSx SINE Alu 29 311 0 275 250 0 0 chr4 193777317 193777377 -8550970 - LTR37B LTR ERV1 -402 66 7 857 267 64 21 chr4 193777382 193777663 -8550684 - HsTC2 DNA Tc2 -341 1557 1265 315 188 62 18 chr4 193777703 193777815 -8550532 - HsTC2 DNA Tc2 -77 1821 1705 4217 174 23 43 chr4 193778415 193779456 -8548891 - L1PB4 LINE L1 -20 6136 5103 180 0 0 0 chr4 193780410 193780430 -8547917 + (A)n Simple_repeat Simple_repeat 1 20 0 310 189 0 0 chr4 193781297 193781350 -8546997 + MER94 DNA DNA 26 78 -56 304 271 174 7 chr4 193782775 193782931 -8545416 + MIR SINE MIR 14 189 -63 2892 134 42 2 chr4 193783001 193783455 -8544892 + MER101 LTR ERV1 1 472 -2 307 279 45 9 chr4 193783708 193783819 -8544528 + MIR3 SINE MIR 85 199 -9 372 325 153 6 chr4 193784526 193784683 -8543664 + MER5A DNA MER1_type 10 189 0 1903 179 6 3 chr4 193784817 193785136 -8543211 - 7SLRNA srpRNA srpRNA 0 320 1 21 36 0 0 chr4 193785416 193785444 -8542903 + AT_rich Low_complexity Low_complexity 1 28 0 1983 117 88 23 chr4 193785660 193786012 -8542335 - THE1C LTR MaLR 0 375 1 10053 110 59 7 chr4 193786012 193787513 -8540834 - THE1C-int LTR MaLR 0 1580 1 1853 143 76 25 chr4 193787513 193787870 -8540477 - THE1C LTR MaLR 0 375 1 2027 192 86 25 chr4 193788722 193789232 -8539115 - MER67A LTR ERV1 -2 541 1 631 291 24 0 chr4 193790071 193790277 -8538070 + MIR SINE MIR 17 227 -35 1894 161 0 13 chr4 193790335 193790640 -8537707 + AluJb SINE Alu 1 301 -11 279 93 0 0 chr4 193791210 193791253 -8537094 + (ATTG)n Simple_repeat Simple_repeat 2 44 0 279 280 97 0 chr4 193791254 193791347 -8537000 - L2 LINE L2 0 3313 3212 936 186 4 0 chr4 193792873 193793371 -8534976 + (TAGA)n Simple_repeat Simple_repeat 1 500 0 314 177 0 16 chr4 193793379 193793441 -8534906 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 1374 277 91 20 chr4 193793627 193794320 -8534027 - L2 LINE L2 -1873 1441 700 591 231 62 8 chr4 193794323 193794453 -8533894 + MER58A DNA MER1_type 1 137 0 315 351 39 7 chr4 193795413 193795567 -8532780 - HAL1b LINE L1 -749 599 441 500 183 0 11 chr4 193796286 193796379 -8531968 + Tigger2a DNA MER2_type 1 92 -342 195 42 0 0 chr4 193796383 193796407 -8531940 + (TCC)n Simple_repeat Simple_repeat 3 26 0 1098 151 65 60 chr4 193796410 193796642 -8531705 + Tigger2a DNA MER2_type 212 444 0 183 156 0 0 chr4 193796668 193796700 -8531647 + (CATATA)n Simple_repeat Simple_repeat 3 34 0 359 296 195 45 chr4 193796829 193797170 -8531177 + L2 LINE L2 2874 3277 -36 2319 106 3 0 chr4 193797170 193797473 -8530874 - AluSx SINE Alu -8 304 1 359 296 195 45 chr4 193797473 193797506 -8530841 + L2 LINE L2 3277 3304 -9 225 0 0 0 chr4 193798534 193798559 -8529788 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 37 69 0 0 chr4 193799079 193799151 -8529196 + AT_rich Low_complexity Low_complexity 1 72 0 222 227 47 20 chr4 193799234 193799384 -8528963 + (TA)n Simple_repeat Simple_repeat 1 154 0 222 164 16 49 chr4 193799435 193799496 -8528851 + (TA)n Simple_repeat Simple_repeat 2 60 0 224 171 0 0 chr4 193799865 193799906 -8528441 - MER91A DNA MER1_type -117 79 39 456 206 65 110 chr4 193801282 193801699 -8526648 - L1ME4a LINE L1 -46 6075 5678 391 103 11 0 chr4 193801704 193801769 -8526578 + MER6 DNA MER2_type 798 865 0 2098 124 3 0 chr4 193802039 193802329 -8526018 + AluSx SINE Alu 1 291 -21 232 273 0 0 chr4 193802800 193802866 -8525481 + L2 LINE L2 3243 3308 -5 1894 123 49 0 chr4 193802938 193803222 -8525125 - AluSx SINE Alu -14 298 1 228 241 138 23 chr4 193804182 193804269 -8524078 - MER63 DNA MER1_type -2 1058 962 825 189 206 68 chr4 193804360 193804688 -8523659 - MER63D DNA MER1_type -626 435 57 1931 169 31 17 chr4 193804688 193805048 -8523299 - MLT1A1 LTR MaLR 0 365 1 354 196 25 31 chr4 193805081 193805244 -8523103 + (TA)n Simple_repeat Simple_repeat 1 162 0 238 169 51 17 chr4 193805267 193805326 -8523021 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 315 256 22 11 chr4 193805364 193805454 -8522893 + MER94 DNA DNA 38 128 -6 429 341 44 0 chr4 193805672 193805854 -8522493 + MIR SINE MIR 61 250 -12 265 280 110 60 chr4 193806093 193806393 -8521954 + MLT1K LTR MaLR 122 436 -152 684 185 0 0 chr4 193806619 193806781 -8521566 + CT-rich Low_complexity Low_complexity 3 164 0 625 135 29 0 chr4 193806788 193806892 -8521455 - FLAM_A SINE Alu -35 107 1 4330 153 25 64 chr4 193809850 193810706 -8517641 - LTR12 LTR ERV1 0 826 5 2194 200 32 30 chr4 193810722 193811323 -8517024 - pTR5 LTR ERV1 -1094 1344 743 1391 203 72 70 chr4 193811481 193811963 -8516384 - MLT1D LTR MaLR -6 499 14 4042 106 46 18 chr4 193811963 193812588 -8515759 + LTR9B LTR ERV1 1 643 -1 1391 203 72 70 chr4 193812588 193812602 -8515745 - MLT1D LTR MaLR -491 14 2 2417 74 0 3 chr4 193813147 193813443 -8514904 + AluSp SINE Alu 1 295 -18 403 293 139 8 chr4 193814145 193814404 -8513943 - L1MEd LINE L1 -3314 2815 2523 331 289 56 25 chr4 193814406 193814603 -8513744 - L1MEd LINE L1 -3733 2396 2194 1008 123 237 0 chr4 193814610 193814821 -8513526 - L1MA3 LINE L1 -1 6304 6044 870 277 69 38 chr4 193815272 193815350 -8512997 - L1MEd LINE L1 -794 1696 1622 1187 122 33 0 chr4 193815350 193815531 -8512816 + L1PA15 LINE L1 5979 6165 0 870 277 69 38 chr4 193815531 193816174 -8512173 - L1MEd LINE L1 -868 1622 864 1013 218 126 80 chr4 193816220 193816541 -8511806 - MER34C LTR ERV1 0 585 227 2128 132 3 0 chr4 193816541 193816836 -8511511 + AluSx SINE Alu 5 300 -12 1013 218 126 80 chr4 193816836 193817064 -8511283 - MER34C LTR ERV1 -358 227 11 441 66 0 0 chr4 193817162 193817223 -8511124 + (TG)n Simple_repeat Simple_repeat 2 62 0 327 338 91 30 chr4 193817227 193817340 -8511007 - L1MEd LINE L1 -5429 690 585 2169 137 6 23 chr4 193817340 193817683 -8510664 + MER1B DNA MER1_type 1 337 0 327 338 91 30 chr4 193817683 193817800 -8510547 - L1MEd LINE L1 -5534 585 446 216 0 0 0 chr4 193817884 193817908 -8510439 + (TG)n Simple_repeat Simple_repeat 2 25 0 2328 117 0 0 chr4 193818099 193818408 -8509939 - AluSc SINE Alu 0 309 1 11732 164 66 42 chr4 193820045 193820094 -8508253 + L1MCa LINE L1 21 67 -6359 1777 180 3 16 chr4 193820094 193820439 -8507908 + AluJo SINE Alu 1 312 0 11732 164 66 42 chr4 193820439 193822236 -8506111 + L1MCa LINE L1 67 1820 -4606 2215 112 0 16 chr4 193822236 193822539 -8505808 + AluSx SINE Alu 1 298 -14 11732 164 66 42 chr4 193822539 193824144 -8504203 + L1MCa LINE L1 1820 3596 -2830 185 315 85 23 chr4 193824626 193824756 -8503591 + L2 LINE L2 2398 2535 -779 225 196 0 36 chr4 193824872 193824928 -8503419 - LTR66 LTR ERVL -169 441 388 594 266 32 47 chr4 193825127 193825397 -8502950 - L1MC4a LINE L1 -347 5823 5645 585 255 5 62 chr4 193825488 193825680 -8502667 - MIR SINE MIR -21 241 61 421 270 243 18 chr4 193825691 193825913 -8502434 - L1MC4a LINE L1 -2154 5654 5383 2600 258 67 20 chr4 193826659 193827556 -8500791 - L1MC3 LINE L1 -12 7773 6835 341 239 11 11 chr4 193827556 193827644 -8500703 - L1MD3 LINE L1 -783 7212 7125 2568 238 60 45 chr4 193827803 193828576 -8499771 - MER21B LTR ERV1 -51 812 29 493 256 112 0 chr4 193828570 193828695 -8499652 + Tigger7 DNA MER2_type 141 279 -2208 * 669 97 0 11 chr4 193828681 193828774 -8499573 + Tigger7 DNA MER2_type 2490 2581 -6 663 67 0 0 chr4 193828957 193829046 -8499301 + (TAGA)n Simple_repeat Simple_repeat 1 89 0 2370 168 12 17 chr4 193829452 193829571 -8498776 + MER57A LTR ERV1 1 119 -284 2556 150 2 0 chr4 193829571 193829971 -8498376 - MER57A LTR ERV1 -2 401 1 2370 168 12 17 chr4 193829971 193830256 -8498091 + MER57A LTR ERV1 119 403 0 26 30 0 0 chr4 193830482 193830515 -8497832 + AT_rich Low_complexity Low_complexity 1 33 0 2176 174 36 32 chr4 193830608 193831158 -8497189 - MLT2A2 LTR ERVL 0 554 1 1368 276 73 58 chr4 193831619 193832262 -8496085 + MER21B LTR ERV1 63 730 -13 2285 111 0 0 chr4 193832944 193833242 -8495105 - AluSx SINE Alu -14 298 1 339 25 0 0 chr4 193834038 193834078 -8494269 + (TG)n Simple_repeat Simple_repeat 1 40 0 234 62 0 0 chr4 193834078 193834110 -8494237 + (GA)n Simple_repeat Simple_repeat 2 33 0 243 242 0 0 chr4 193834183 193834245 -8494102 - HAL1 LINE L1 -1017 1490 1429 584 216 0 0 chr4 193834382 193834493 -8493854 + MER81 DNA DNA 4 114 0 988 281 79 43 chr4 193834543 193835059 -8493288 - L2 LINE L2 0 3313 2780 1381 76 0 0 chr4 193835062 193835233 -8493114 - AluSg/x SINE Alu -6 306 136 316 275 0 0 chr4 193835234 193835303 -8493044 - L2 LINE L2 -528 2786 2718 1583 197 16 102 chr4 193835306 193835808 -8492539 + MLT1C LTR MaLR 6 464 -3 356 289 0 31 chr4 193835811 193835939 -8492408 - L2 LINE L2 -492 2822 2699 765 260 34 107 chr4 193836104 193836148 -8492199 - MLT1J LTR MaLR 0 511 465 2031 135 7 3 chr4 193836148 193836452 -8491895 + AluSx SINE Alu 1 305 -7 765 260 34 107 chr4 193836452 193836791 -8491556 - MLT1J LTR MaLR -46 465 156 231 207 46 81 chr4 193836844 193836931 -8491416 - L1ME3 LINE L1 -91 6071 5988 329 224 47 35 chr4 193837383 193837553 -8490794 - L1MEc LINE L1 -4133 2263 2092 * 2615 183 32 35 chr4 193837541 193838141 -8490206 - L1MB2 LINE L1 -3 6168 5571 833 118 0 0 chr4 193838143 193838262 -8490085 + AluSg/x SINE Alu 186 304 -8 5407 171 57 72 chr4 193838262 193839709 -8488638 + LTR48-int LTR ERV1 3433 6149 -182 886 211 116 40 chr4 193839807 193840407 -8487940 + LTR48 LTR ERV1 1 542 0 3957 172 71 20 chr4 193840409 193840869 -8487478 - L1MB2 LINE L1 -1277 4869 4434 2055 113 44 0 chr4 193840869 193841174 -8487173 - AluSq SINE Alu 0 317 1 3957 172 71 20 chr4 193841174 193841313 -8487034 - L1MB2 LINE L1 -1712 4434 4303 342 0 0 0 chr4 193841313 193841351 -8486996 + (TG)n Simple_repeat Simple_repeat 1 38 0 3957 172 71 20 chr4 193841351 193841598 -8486749 - L1MB2 LINE L1 -1843 4303 3978 823 240 59 103 chr4 193841608 193842153 -8486194 - L1MEc LINE L1 -4288 2108 1588 198 281 88 0 chr4 193842305 193842362 -8485985 - MIR SINE MIR -64 144 83 245 39 78 0 chr4 193842397 193842448 -8485899 + T-rich Low_complexity Low_complexity 2 56 0 308 308 70 27 chr4 193844219 193844404 -8483943 + MIR SINE MIR 22 214 -48 537 283 38 16 chr4 193844731 193844915 -8483432 + MIR SINE MIR 3 190 -72 1480 213 128 22 chr4 193844924 193845337 -8483010 - MLT1C LTR MaLR -8 459 3 183 385 10 0 chr4 193845432 193845536 -8482811 - MIR SINE MIR -108 154 50 216 247 0 82 chr4 193846343 193846428 -8481919 + MIR3 SINE MIR 126 203 -5 365 257 38 0 chr4 193846710 193846815 -8481532 + LTR33 LTR ERVL 355 463 -58 562 124 0 19 chr4 193847037 193847142 -8481205 + (TTCC)n Simple_repeat Simple_repeat 2 104 0 249 159 0 0 chr4 193847321 193847365 -8480982 + CT-rich Low_complexity Low_complexity 1 44 0 6560 90 23 2 chr4 193847607 193848633 -8479714 - L1PB1 LINE L1 0 6151 5105 276 274 55 0 chr4 193849075 193849148 -8479199 + Tigger6 DNA MER2_type 5 81 -1516 6114 91 8 1 chr4 193849148 193849985 -8478362 + L1PB2 LINE L1 5306 6148 -3 1309 163 7 114 chr4 193850004 193850311 -8478036 + Tigger6 DNA MER2_type 63 336 -1261 3083 201 22 20 chr4 193850676 193851324 -8477023 + Tigger6 DNA MER2_type 945 1593 -4 598 287 0 6 chr4 193851333 193851490 -8476857 - MIR SINE MIR -106 156 1 1705 151 42 42 chr4 193851725 193852206 -8476141 + AluJb SINE Alu 1 481 0 538 268 76 25 chr4 193852373 193852571 -8475776 + L2 LINE L2 3105 3312 -1 550 202 28 9 chr4 193852733 193852842 -8475505 - MER81 DNA DNA -3 111 1 275 180 20 0 chr4 193856804 193856854 -8471493 + L1MA5A LINE L1 6150 6200 -97 375 23 0 0 chr4 193857735 193857779 -8470568 + (GGATG)n Simple_repeat Simple_repeat 3 46 0 1855 158 7 10 chr4 193858666 193858969 -8469378 + AluJo SINE Alu 1 302 -10 189 147 0 0 chr4 193859611 193859645 -8468702 + (TC)n Simple_repeat Simple_repeat 1 34 0 2188 205 88 26 chr4 193860769 193861311 -8467036 + MLT1E LTR MaLR 4 573 -17 428 322 49 0 chr4 193861323 193861506 -8466841 + MIR SINE MIR 58 249 -13 196 262 0 0 chr4 193861719 193861761 -8466586 - MIR3 SINE MIR -39 169 128 285 151 19 142 chr4 193863691 193863797 -8464550 + MIR3 SINE MIR 93 185 -23 2710 30 0 7 chr4 193864660 193864965 -8463382 + AluY SINE Alu 2 304 -7 2028 143 7 7 chr4 193865956 193866263 -8462084 - AluJo SINE Alu -5 307 1 720 181 0 0 chr4 193866352 193866468 -8461879 + AluJb SINE Alu 3 118 -194 212 0 0 35 chr4 193866470 193866499 -8461848 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1799 143 24 12 chr4 193866722 193867051 -8461296 + L1MB3 LINE L1 5844 6176 -7 278 290 183 0 chr4 193867644 193867775 -8460572 + MIR3 SINE MIR 28 182 -26 2401 93 3 0 chr4 193867904 193868215 -8460132 + AluSx SINE Alu 1 312 0 468 99 28 0 chr4 193869110 193869181 -8459166 - L1MC/D LINE L1 -650 5709 5637 4614 187 13 24 chr4 193869388 193870338 -8458009 - L1MD2 LINE L1 -10 6349 5411 325 208 42 0 chr4 193870538 193870610 -8457737 - MIR SINE MIR -109 153 79 546 231 16 8 chr4 193872329 193872450 -8455897 + L1ME1 LINE L1 6020 6141 -25 341 326 35 17 chr4 193873030 193873202 -8455145 - MIR SINE MIR -80 182 8 379 301 90 8 chr4 193873627 193873760 -8454587 - MIR3 SINE MIR -15 193 50 235 273 11 68 chr4 193873961 193874049 -8454298 - MIR SINE MIR -51 211 129 338 332 14 35 chr4 193874075 193874213 -8454134 - MIR SINE MIR -80 128 20 2063 95 7 11 chr4 193874489 193874798 -8453549 + AluSx SINE Alu 1 308 0 2182 89 7 3 chr4 193875753 193876056 -8452291 - AluSc SINE Alu -5 304 1 326 299 139 36 chr4 193877061 193877255 -8451092 + L2 LINE L2 3092 3305 -8 193 281 45 34 chr4 193877457 193877546 -8450801 - L3b LINE CR1 -343 1240 1151 1781 142 3 16 chr4 193879144 193879447 -8448900 + AluJo SINE Alu 3 301 -11 506 267 88 46 chr4 193879654 193879871 -8448476 + MIR SINE MIR 18 243 -19 2221 94 0 3 chr4 193880589 193880888 -8447459 - AluSx SINE Alu -14 298 1 216 0 0 0 chr4 193881535 193881559 -8446788 + (A)n Simple_repeat Simple_repeat 1 24 0 310 263 143 91 chr4 193883050 193883225 -8445122 - L3 LINE CR1 -132 1445 1262 332 262 156 25 chr4 193883549 193883671 -8444676 + MIR SINE MIR 34 171 -91 969 141 18 47 chr4 193883864 193884034 -8444313 - FRAM SINE Alu -1 165 1 620 224 39 6 chr4 193885045 193885201 -8443146 + MER104 DNA Tc2 17 177 -3 300 284 11 32 chr4 193885374 193885469 -8442878 - L2 LINE L2 0 3272 3180 1744 142 10 33 chr4 193885571 193885873 -8442474 + AluJb SINE Alu 14 308 -4 788 211 40 84 chr4 193885922 193886244 -8442103 + L1MC5 LINE L1 7467 7774 -187 225 233 0 96 chr4 193886266 193886293 -8442054 - MER116 DNA Mariner -2 78 50 2090 117 0 16 chr4 193886293 193886602 -8441745 + AluSx SINE Alu 1 304 -8 225 233 0 96 chr4 193886602 193886647 -8441700 - MER116 DNA Mariner -30 50 13 21 36 0 0 chr4 193886827 193886855 -8441492 + AT_rich Low_complexity Low_complexity 1 28 0 209 229 33 66 chr4 193886899 193886960 -8441387 + MIR3 SINE MIR 118 176 -32 484 275 0 0 chr4 193888365 193888474 -8439873 + MER81 DNA DNA 5 113 -1 180 0 0 0 chr4 193889101 193889121 -8439226 + (A)n Simple_repeat Simple_repeat 1 20 0 2005 128 0 0 chr4 193889407 193889697 -8438650 - AluSx SINE Alu -22 290 1 315 307 74 31 chr4 193890296 193890459 -8437888 - MIR SINE MIR -79 183 14 180 299 0 52 chr4 193890509 193890586 -8437761 + MER5B DNA MER1_type 77 149 -29 202 206 0 0 chr4 193891241 193891275 -8437072 + (CA)n Simple_repeat Simple_repeat 1 34 0 1841 199 88 0 chr4 193891392 193891780 -8436567 + MSTB LTR MaLR 5 426 0 3486 145 49 46 chr4 193891785 193892462 -8435885 + L1MB5 LINE L1 5464 6142 -32 300 288 61 30 chr4 193893292 193893556 -8434791 + L1MC5 LINE L1 7457 7728 -233 225 65 0 0 chr4 193893583 193893614 -8434733 + (CA)n Simple_repeat Simple_repeat 2 32 0 2730 125 28 21 chr4 193893868 193894293 -8434054 + MSTC LTR MaLR 1 428 0 223 295 39 39 chr4 193894497 193894626 -8433721 - L2 LINE L2 -16 3297 3169 1051 211 159 46 chr4 193895377 193895508 -8432839 - MLT1D LTR MaLR 0 505 390 2029 97 0 47 chr4 193895508 193895845 -8432502 - AluSx SINE Alu 0 323 1 1051 211 159 46 chr4 193895845 193896166 -8432181 - MLT1D LTR MaLR -115 390 1 688 213 58 7 chr4 193896418 193896573 -8431774 + MIR SINE MIR 100 262 0 1662 152 38 0 chr4 193896903 193897192 -8431155 + AluJb SINE Alu 1 300 -12 1903 145 0 3 chr4 193898045 193898341 -8430006 + AluJo SINE Alu 1 295 -17 1785 154 3 3 chr4 193900232 193900525 -8427822 - AluJo SINE Alu -19 293 1 236 146 0 21 chr4 193900776 193900824 -8427523 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 2503 230 42 2 chr4 193901669 193902199 -8426148 - MER82 DNA MER2_type 0 653 103 776 207 94 97 chr4 193902198 193902507 -8425840 + MLT1C LTR MaLR 158 465 -2 * 183 42 0 0 chr4 193903185 193903209 -8425138 + (TTGG)n Simple_repeat Simple_repeat 2 25 0 343 333 22 7 chr4 193903772 193903907 -8424440 + MIR3 SINE MIR 36 172 -36 290 178 51 144 chr4 193904382 193904432 -8423915 - MIR SINE MIR -12 250 216 902 211 0 0 chr4 193904432 193904598 -8423749 + FRAM SINE Alu 1 166 0 290 178 51 144 chr4 193904598 193904665 -8423682 - MIR SINE MIR -46 216 144 240 304 68 34 chr4 193904970 193905118 -8423229 + L1ME LINE L1 12 164 -5906 2328 94 0 0 chr4 193905495 193905804 -8422543 - AluSc SINE Alu 0 309 1 233 273 101 71 chr4 193905842 193905941 -8422406 - L2 LINE L2 -10 3262 3161 217 221 77 96 chr4 193906336 193906411 -8421936 - MIR SINE MIR -37 225 151 1412 185 13 41 chr4 193906411 193906581 -8421766 - AluJb SINE Alu -7 305 147 2125 102 0 20 chr4 193906581 193906885 -8421462 - AluSg SINE Alu -12 298 1 1412 185 13 41 chr4 193906885 193907028 -8421319 - AluJb SINE Alu -165 147 1 217 221 77 96 chr4 193907028 193907056 -8421291 - MIR SINE MIR -111 151 124 447 251 113 31 chr4 193907610 193907805 -8420542 - MIR SINE MIR -21 241 31 414 97 16 0 chr4 193908162 193908224 -8420123 - Alu SINE Alu -247 64 2 21 0 0 0 chr4 193908840 193908861 -8419486 + AT_rich Low_complexity Low_complexity 1 21 0 340 337 86 0 chr4 193910340 193910515 -8417832 - L2 LINE L2 -880 2434 2245 241 276 181 0 chr4 193910771 193910876 -8417471 + MER3 DNA MER1_type 1 124 -85 868 222 30 22 chr4 193911231 193911456 -8416891 - MIR SINE MIR 0 262 38 198 0 0 0 chr4 193912411 193912433 -8415914 + (TGGGGG)n Simple_repeat Simple_repeat 6 27 0 1990 101 0 4 chr4 193912456 193912734 -8415613 - AluSx SINE Alu -14 298 22 3350 148 17 9 chr4 193912737 193913313 -8415034 - L1PA16 LINE L1 -1 6165 5585 415 261 119 30 chr4 193913939 193914073 -8414274 + MIR SINE MIR 111 256 -6 340 255 85 29 chr4 193914075 193914211 -8414136 + L1ME LINE L1 5670 5811 -318 1218 180 16 0 chr4 193914226 193914420 -8413927 - Tigger7 DNA MER2_type -508 197 1 1998 144 0 3 chr4 193914901 193915213 -8413134 + AluSx SINE Alu 1 311 -1 2188 201 31 16 chr4 193915342 193915795 -8412552 + MLT1C LTR MaLR 6 465 -2 3904 256 95 17 chr4 193916044 193916249 -8412098 + L1MC4 LINE L1 6466 6654 -1388 1898 63 0 12 chr4 193916249 193916501 -8411846 + AluY SINE Alu 49 297 -14 3904 256 95 17 chr4 193916501 193917679 -8410668 + L1MC4 LINE L1 6654 8041 -1 216 270 153 22 chr4 193918785 193918922 -8409425 + L2 LINE L2 2913 3067 -205 361 245 66 9 chr4 193918942 193919048 -8409299 + L2 LINE L2 3200 3311 -2 270 258 32 11 chr4 193919394 193919487 -8408860 + MER94 DNA DNA 25 119 -15 1163 203 83 43 chr4 193919527 193919852 -8408495 - MER46C DNA MER2_type 0 338 1 198 0 0 0 chr4 193920366 193920388 -8407959 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 351 276 86 0 chr4 193920927 193921032 -8407315 - MIR SINE MIR -13 249 136 333 209 68 49 chr4 193921997 193922114 -8406233 + MIR SINE MIR 4 122 -92 1004 148 0 0 chr4 193922163 193922373 -8405974 + FRAM SINE Alu 10 219 0 431 233 68 15 chr4 193922408 193922541 -8405806 + L1ME LINE L1 5526 5665 -456 206 342 221 7 chr4 193924219 193924368 -8403979 + MIR SINE MIR 3 183 -79 278 146 0 18 chr4 193924770 193924825 -8403522 + (TCCCC)n Simple_repeat Simple_repeat 4 57 0 899 127 0 8 chr4 193924840 193924974 -8403373 - FLAM_C SINE Alu 0 133 1 193 309 49 37 chr4 193925415 193925496 -8402851 - L2 LINE L2 -34 3238 3157 221 307 71 0 chr4 193925820 193925960 -8402387 - L2 LINE L2 -223 3049 2900 384 248 19 81 chr4 193926615 193926776 -8401571 + MLT1E2 LTR MaLR 7 157 -469 235 366 104 0 chr4 193927847 193927981 -8400366 + L2 LINE L2 3123 3270 -2 4163 179 72 11 chr4 193929185 193930033 -8398314 + L1MB4 LINE L1 5280 6179 -1 588 143 0 0 chr4 193930150 193930248 -8398099 + (CA)n Simple_repeat Simple_repeat 2 99 0 396 202 11 11 chr4 193930497 193930591 -8397756 - L1MD3 LINE L1 -3 7992 7899 1525 192 36 0 chr4 193932861 193933168 -8395179 + MER33 DNA MER1_type 1 318 -6 21 0 0 0 chr4 193933177 193933198 -8395149 + AT_rich Low_complexity Low_complexity 1 21 0 373 258 0 10 chr4 193933429 193933526 -8394821 - LTR68 LTR ERV1 -3 737 642 1248 188 107 4 chr4 193934015 193934287 -8394060 - LTR68 LTR ERV1 -61 679 380 212 273 0 0 chr4 193934372 193934416 -8393931 + T-rich Low_complexity Low_complexity 2 45 0 349 254 70 65 chr4 193934494 193934679 -8393668 + LTR40a LTR ERVL 334 519 0 1155 277 97 36 chr4 193934942 193935519 -8392828 - L1ME4a LINE L1 -3 6118 5507 2367 74 34 0 chr4 193935583 193935880 -8392467 - AluSq SINE Alu -6 307 1 343 196 8 111 chr4 193935959 193936079 -8392268 + L1MA4 LINE L1 6194 6300 0 1740 175 49 3 chr4 193936243 193936551 -8391796 - MER7A DNA MER2_type -26 320 1 2276 102 3 3 chr4 193937736 193938040 -8390307 + AluSx SINE Alu 1 304 -8 1882 126 24 17 chr4 193938925 193939219 -8389128 + AluJo SINE Alu 1 296 -16 211 171 0 0 chr4 193939871 193939906 -8388441 + MIR SINE MIR 216 250 -12 2048 131 6 31 chr4 193939930 193940250 -8388097 + AluSx SINE Alu 1 312 0 249 324 49 21 chr4 193940829 193940971 -8387376 + L2 LINE L2 3161 3306 -7 26 64 0 0 chr4 193942778 193942825 -8385522 + GC_rich Low_complexity Low_complexity 1 47 0 29 84 0 0 chr4 193942898 193942969 -8385378 + GC_rich Low_complexity Low_complexity 1 71 0 27 62 0 0 chr4 193943150 193943198 -8385149 + GC_rich Low_complexity Low_complexity 1 48 0 258 136 0 0 chr4 193943422 193943466 -8384881 + (CA)n Simple_repeat Simple_repeat 1 44 0 318 87 0 0 chr4 193943612 193943658 -8384689 + (TCC)n Simple_repeat Simple_repeat 2 47 0 189 121 0 0 chr4 193943665 193943698 -8384649 + (CAG)n Simple_repeat Simple_repeat 1 33 0 308 284 0 0 chr4 193944110 193944191 -8384156 + C-rich Low_complexity Low_complexity 1 81 0 22 35 0 0 chr4 193944443 193944472 -8383875 + GC_rich Low_complexity Low_complexity 1 29 0 1339 120 5 15 chr4 193945515 193945715 -8382632 + AluSp SINE Alu 1 198 -115 227 218 100 36 chr4 193945845 193945955 -8382392 + MIR SINE MIR 96 212 -50 2044 116 49 0 chr4 193946046 193946331 -8382016 + AluSx SINE Alu 1 299 -13 1182 150 0 0 chr4 193946764 193946931 -8381416 - AluJb SINE Alu -12 300 134 1591 187 17 20 chr4 193946931 193947231 -8381116 - AluJo SINE Alu -7 305 7 323 210 63 105 chr4 193948440 193948583 -8379764 + MLT2F LTR ERVL 365 501 -162 318 283 10 10 chr4 193948716 193948815 -8379532 + MER103 DNA DNA 66 164 -2 1340 164 0 72 chr4 193948817 193949079 -8379268 + MLT1B LTR MaLR 1 243 -147 2388 98 0 0 chr4 193949080 193949377 -8378970 + AluSg SINE Alu 2 298 -12 280 119 68 17 chr4 193949478 193949537 -8378810 - L1ME1 LINE L1 -17 6149 6088 231 246 62 15 chr4 193949537 193949602 -8378745 - MER3 DNA MER1_type -127 82 15 6870 228 102 17 chr4 193949602 193950255 -8378092 - L1ME1 LINE L1 -145 6021 5425 2523 60 0 3 chr4 193950255 193950553 -8377794 - AluY SINE Alu -14 297 1 6870 228 102 17 chr4 193950553 193950780 -8377567 - L1ME1 LINE L1 -741 5425 5219 2669 27 3 0 chr4 193950780 193951079 -8377268 - AluY SINE Alu -11 300 1 6870 228 102 17 chr4 193951079 193951207 -8377140 - L1ME1 LINE L1 -947 5219 5103 2476 167 43 5 chr4 193951207 193951649 -8376698 + LOR1b LTR ERV1 1 459 -2 6870 228 102 17 chr4 193951649 193952686 -8375661 - L1ME1 LINE L1 -1063 5103 4155 2177 103 0 3 chr4 193952686 193952991 -8375356 - AluSg SINE Alu 0 304 1 6870 228 102 17 chr4 193952991 193953930 -8374417 - L1ME1 LINE L1 -2011 4155 2770 22 80 0 0 chr4 193954475 193954525 -8373822 + AT_rich Low_complexity Low_complexity 1 50 0 380 271 9 9 chr4 193954620 193954727 -8373620 + MIR SINE MIR 4 110 -152 2030 70 124 13 chr4 193955042 193955341 -8373006 - L1PA11 LINE L1 0 6174 5843 2280 115 0 13 chr4 193955537 193955850 -8372497 - AluSx SINE Alu -3 309 1 1396 250 178 41 chr4 193956080 193956663 -8371684 + MLT2F LTR ERVL 1 663 0 244 281 0 24 chr4 193956681 193956763 -8371584 + MLT1B-int LTR MaLR 22 101 -1634 2261 119 0 0 chr4 193956984 193957294 -8371053 + AluSg SINE Alu 1 310 0 1191 143 21 0 chr4 193957294 193957483 -8370864 + AluSg/x SINE Alu 118 310 0 2359 83 0 13 chr4 193957496 193957810 -8370537 + AluY SINE Alu 1 310 -1 269 371 38 23 chr4 193958030 193958294 -8370053 + L1MDa LINE L1 80 347 -6193 241 211 26 13 chr4 193958337 193958413 -8369934 + MLT1G1-int LTR MaLR 1639 1715 -20 1313 221 29 14 chr4 193958447 193958727 -8369620 + MLT1G1 LTR MaLR 18 301 -294 236 167 58 142 chr4 193958720 193958840 -8369507 + MLT1G1 LTR MaLR 472 581 -12 * 3602 137 27 12 chr4 193959632 193960217 -8368130 - LTR26 LTR ERV1 0 603 10 2455 78 0 0 chr4 193960220 193960529 -8367818 + AluY SINE Alu 1 309 -2 228 182 0 0 chr4 193960744 193960788 -8367559 + MIR SINE MIR 105 148 -114 225 0 0 0 chr4 193963353 193963378 -8364969 + (TTCTC)n Simple_repeat Simple_repeat 2 26 0 219 200 0 0 chr4 193964820 193964865 -8363482 - L2 LINE L2 -6 3307 3263 242 302 195 0 chr4 193965112 193965271 -8363076 + L2 LINE L2 2337 2526 -788 366 289 18 26 chr4 193965333 193965447 -8362900 - MIR SINE MIR -98 164 52 534 143 0 0 chr4 193965450 193965527 -8362820 + AluS SINE Alu 2 78 -235 1403 92 74 18 chr4 193965997 193966214 -8362133 + MER30 DNA MER1_type 1 229 -1 246 341 23 8 chr4 193966436 193966568 -8361779 - L2 LINE L2 -312 3001 2868 1602 218 0 40 chr4 193966569 193966917 -8361430 - MER58B DNA MER1_type -6 335 2 514 327 50 43 chr4 193966923 193967201 -8361146 - L2 LINE L2 -440 2874 2595 396 0 0 0 chr4 193967480 193967524 -8360823 + (CA)n Simple_repeat Simple_repeat 1 44 0 2453 184 20 22 chr4 193967531 193967983 -8360364 + MLT2B2 LTR ERVL 8 458 -57 292 286 0 12 chr4 193967999 193968083 -8360264 + (TA)n Simple_repeat Simple_repeat 1 83 0 5525 122 14 5 chr4 193968129 193968956 -8359391 - HSMAR2 DNA Mariner -145 1157 323 183 42 0 0 chr4 193969573 193969597 -8358750 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1398 215 132 50 chr4 193970156 193970617 -8357730 - MLT1D LTR MaLR 0 505 7 748 246 76 56 chr4 193970824 193971310 -8357037 - L1MEc LINE L1 -4807 1559 1023 268 109 18 0 chr4 193971315 193971370 -8356977 - L1MC3 LINE L1 -6 7779 7724 2563 136 17 22 chr4 193971384 193971797 -8356550 - MSTA LTR MaLR -17 411 1 4398 113 3 3 chr4 193971802 193972455 -8355892 - L1P LINE L1 -1187 4959 4307 32 43 0 0 chr4 193972457 193972503 -8355844 + AT_rich Low_complexity Low_complexity 1 46 0 1116 193 14 0 chr4 193972507 193972714 -8355633 - MER2 DNA MER2_type -134 211 2 1234 150 38 60 chr4 193972715 193972982 -8355365 - L1MC3 LINE L1 -823 6962 6702 2371 83 0 19 chr4 193973012 193973324 -8355023 - AluSg SINE Alu -4 306 1 1210 249 65 113 chr4 193973324 193974382 -8353965 - L1MEc LINE L1 -5340 1056 49 1004 258 52 68 chr4 193974433 193974707 -8353640 - HAL1 LINE L1 -1133 1374 1097 1916 161 41 16 chr4 193974707 193975073 -8353274 - THE1C LTR MaLR 0 375 1 1004 258 52 68 chr4 193975073 193975372 -8352975 - HAL1 LINE L1 -1410 1097 810 909 208 0 0 chr4 193975378 193975546 -8352801 + FRAM SINE Alu 6 173 -3 345 361 76 27 chr4 193975549 193975812 -8352535 - HAL1 LINE L1 -1696 811 536 796 128 15 8 chr4 193976102 193976235 -8352112 - L1MA4 LINE L1 -1 6299 6166 2481 71 0 0 chr4 193976752 193977061 -8351286 + AluY SINE Alu 3 311 0 1993 149 3 3 chr4 193978259 193978560 -8349787 + AluJb SINE Alu 1 301 -11 23 0 0 0 chr4 193978608 193978631 -8349716 + AT_rich Low_complexity Low_complexity 1 23 0 297 0 0 0 chr4 193978644 193978677 -8349670 + (CA)n Simple_repeat Simple_repeat 1 33 0 427 297 31 52 chr4 193978894 193978979 -8349368 - L1MC4a LINE L1 -1887 5921 5836 1623 174 6 63 chr4 193978979 193979295 -8349052 - AluJb SINE Alu -14 298 1 427 297 31 52 chr4 193979295 193979438 -8348909 - L1MC4a LINE L1 -1972 5836 5698 27 62 0 0 chr4 193979452 193979500 -8348847 + AT_rich Low_complexity Low_complexity 1 48 0 470 112 0 11 chr4 193980029 193980118 -8348229 + (TG)n Simple_repeat Simple_repeat 1 88 0 1914 94 12 72 chr4 193980900 193981105 -8347242 - AluSg SINE Alu -10 300 119 2229 87 40 10 chr4 193981105 193981405 -8346942 - AluY SINE Alu -2 309 1 1914 94 12 72 chr4 193981405 193981518 -8346829 - AluSg SINE Alu -191 119 1 364 183 28 0 chr4 193981570 193981641 -8346706 - L1ME4a LINE L1 -71 6050 5978 2018 109 109 56 chr4 193981935 193982294 -8346053 + MER83B LTR ERV1 1 378 0 2229 78 42 0 chr4 193982929 193983212 -8345135 + AluY SINE Alu 1 295 -16 1746 161 3 23 chr4 193983348 193983413 -8344934 - AluJo SINE Alu -13 299 234 2550 165 33 18 chr4 193983413 193983867 -8344480 + LOR1b LTR ERV1 1 461 0 1746 161 3 23 chr4 193983867 193984100 -8344247 - AluJo SINE Alu -78 234 7 21 0 0 0 chr4 193984182 193984203 -8344144 + AT_rich Low_complexity Low_complexity 1 21 0 1800 178 0 17 chr4 193984376 193984674 -8343673 + AluJo SINE Alu 4 296 -16 213 299 217 23 chr4 193984743 193984964 -8343383 + L2 LINE L2 2698 2961 -353 2506 172 19 42 chr4 193984986 193985176 -8343171 + MLT1C LTR MaLR 7 200 -267 2501 78 0 0 chr4 193985176 193985485 -8342862 + AluY SINE Alu 1 309 -2 2506 172 19 42 chr4 193985485 193985766 -8342581 + MLT1C LTR MaLR 200 467 0 500 290 112 26 chr4 193985777 193986046 -8342301 + L2 LINE L2 3005 3296 -17 3749 158 75 41 chr4 193986366 193987214 -8341133 + L1MA9 LINE L1 5320 6292 -20 1512 189 6 39 chr4 193987242 193987554 -8340793 - AluJo SINE Alu -10 302 1 28 61 0 0 chr4 193987557 193987606 -8340741 + AT_rich Low_complexity Low_complexity 1 49 0 639 124 0 0 chr4 193987908 193988021 -8340326 + (CA)n Simple_repeat Simple_repeat 2 114 0 295 259 86 52 chr4 193988698 193988814 -8339533 + L2 LINE L2 3188 3307 -6 2446 53 3 20 chr4 193989159 193989461 -8338886 - AluY SINE Alu -9 302 6 455 283 11 27 chr4 193989863 193990047 -8338300 - L2 LINE L2 -1055 2259 2079 397 279 48 0 chr4 193990158 193990305 -8338042 + L1ME4a LINE L1 5963 6116 -5 212 230 203 0 chr4 193990379 193990453 -8337894 - L2 LINE L2 -2 3270 3182 241 307 101 68 chr4 193990460 193990887 -8337460 - L2 LINE L2 -405 2909 2469 775 176 99 0 chr4 193991466 193991597 -8336750 + FRAM SINE Alu 1 144 -32 2518 63 0 0 chr4 193991597 193991899 -8336448 - AluSg SINE Alu -8 302 1 298 304 32 19 chr4 193991988 193992146 -8336201 + L1M4 LINE L1 3706 3865 -2281 21 57 0 0 chr4 193992208 193992243 -8336104 + AT_rich Low_complexity Low_complexity 1 35 0 2234 98 3 3 chr4 193992246 193992542 -8335805 + AluSg SINE Alu 1 296 -14 5282 135 40 18 chr4 193992550 193993212 -8335135 - L1PA16 LINE L1 -9 6157 5470 2316 79 0 0 chr4 193993212 193993502 -8334845 - AluY SINE Alu -21 290 1 5282 135 40 18 chr4 193993502 193993827 -8334520 - L1PA16 LINE L1 -696 5470 5154 1359 171 95 0 chr4 193993835 193994087 -8334260 + AluJb SINE Alu 1 276 -36 3254 196 20 2 chr4 193994105 193994748 -8333599 - L1PA16 LINE L1 -992 5154 4500 1010 121 0 0 chr4 193995025 193995165 -8333182 - AluJb SINE Alu 0 312 173 689 149 66 33 chr4 193995275 193995396 -8332951 + FLAM_A SINE Alu 1 125 -8 277 167 0 0 chr4 193995400 193995442 -8332905 - FLAM SINE Alu -8 125 84 694 211 0 0 chr4 193997197 193997311 -8331036 + FLAM_A SINE Alu 2 115 -18 1338 223 31 1 chr4 193997320 193997656 -8330691 - MER93a LTR ERV1 -2 400 4 4850 166 46 13 chr4 193998134 193999173 -8329174 + L1MB3 LINE L1 5099 6180 -3 22 70 0 0 chr4 193999207 193999250 -8329097 + AT_rich Low_complexity Low_complexity 1 43 0 1842 126 90 0 chr4 194000156 194000434 -8327913 - AluSg SINE Alu -7 303 1 1330 113 10 15 chr4 194000437 194000632 -8327715 - AluSc SINE Alu -115 194 1 241 296 0 12 chr4 194000750 194000831 -8327516 + AluJ/FLAM SINE Alu 1 80 -222 16831 132 7 17 chr4 194000933 194004128 -8324219 - L1PA11 LINE L1 -348 5826 2664 332 227 73 64 chr4 194004264 194004374 -8323973 + L1MD2 LINE L1 6044 6154 -205 360 105 35 0 chr4 194004938 194004995 -8323352 + L1MC2 LINE L1 6283 6341 -3 2216 126 3 0 chr4 194005101 194005410 -8322937 + AluSg SINE Alu 1 310 0 704 258 12 6 chr4 194005411 194005578 -8322769 - MIR SINE MIR 0 262 95 241 315 146 30 chr4 194005578 194005981 -8322366 + LTR16A LTR ERVL 1 450 0 192 241 161 35 chr4 194005981 194006068 -8322279 - MIR SINE MIR -163 99 2 1109 120 22 22 chr4 194006152 194006336 -8322011 - L1MB7 LINE L1 0 6184 6001 365 302 85 14 chr4 194006460 194006672 -8321675 + L1ME LINE L1 5593 5819 -302 398 286 34 29 chr4 194006977 194007152 -8321195 + MIR SINE MIR 17 192 -70 449 110 253 11 chr4 194007172 194007263 -8321084 - AluJb SINE Alu -18 294 182 719 242 116 25 chr4 194007732 194008009 -8320338 + L2 LINE L2 1487 1788 -1526 1496 138 36 24 chr4 194008129 194008317 -8320030 - MER2 DNA MER2_type 0 345 114 2364 94 53 42 chr4 194008317 194008677 -8319670 + THE1B LTR MaLR 1 364 0 1496 138 36 24 chr4 194008677 194008791 -8319556 - MER2 DNA MER2_type -231 114 3 3586 202 46 29 chr4 194008802 194009487 -8318860 - L1ME1 LINE L1 -51 6115 5409 605 227 15 0 chr4 194009487 194009619 -8318728 + L1PB4 LINE L1 6022 6155 -1 3586 202 46 29 chr4 194009619 194009857 -8318490 - L1ME1 LINE L1 -757 5409 5176 2334 167 52 32 chr4 194009856 194010359 -8317988 + L1MA7 LINE L1 5777 6289 -2 * 409 187 33 0 chr4 194010390 194010481 -8317866 - L1ME1 LINE L1 -973 5173 5080 1853 229 24 30 chr4 194010481 194010975 -8317372 + L1M4 LINE L1 4477 4967 -1179 2118 118 7 0 chr4 194010983 194011280 -8317067 + AluSx SINE Alu 5 303 -9 2560 37 0 3 chr4 194011283 194011580 -8316767 + AluY SINE Alu 4 299 -12 1716 179 13 19 chr4 194012201 194012513 -8315834 + AluJo SINE Alu 1 310 -2 180 111 0 0 chr4 194013915 194013942 -8314405 + (ATG)n Simple_repeat Simple_repeat 1 27 0 667 282 64 10 chr4 194013956 194014158 -8314189 - MIR SINE MIR -15 247 35 534 264 79 82 chr4 194014343 194014646 -8313701 - L2 LINE L2 -1 3312 3011 581 100 0 133 chr4 194014653 194014773 -8313574 + MLT2C1 LTR ERVL 1 104 -293 279 271 49 41 chr4 194014903 194015025 -8313322 - MIR SINE MIR -61 147 60 1863 147 78 3 chr4 194015934 194016254 -8312093 + MER2 DNA MER2_type 1 344 0 225 94 0 0 chr4 194016879 194016911 -8311436 + (TTCC)n Simple_repeat Simple_repeat 4 35 0 2250 118 0 0 chr4 194016950 194017254 -8311093 + AluSg SINE Alu 1 304 -6 1809 153 10 10 chr4 194017539 194017833 -8310514 - AluJb SINE Alu -18 294 1 1636 201 56 5 chr4 194017833 194018225 -8310122 + L1 LINE L1 2751 3162 -2984 22 88 0 0 chr4 194018930 194018987 -8309360 + AT_rich Low_complexity Low_complexity 1 57 0 2083 97 0 52 chr4 194019218 194019527 -8308820 + AluSg SINE Alu 2 294 -16 2116 136 13 0 chr4 194019624 194019932 -8308415 + AluSx SINE Alu 1 312 0 237 200 36 0 chr4 194020300 194020355 -8307992 - MIR SINE MIR -109 153 97 2173 86 3 89 chr4 194021085 194021421 -8306926 + AluSq SINE Alu 1 307 -6 579 306 110 48 chr4 194022090 194022674 -8305673 + L1ME4a LINE L1 5394 6013 -108 25 0 0 0 chr4 194022766 194022791 -8305556 + AT_rich Low_complexity Low_complexity 1 25 0 284 80 0 120 chr4 194023258 194023294 -8305053 + MER63 DNA MER1_type 677 707 -129 2099 208 46 16 chr4 194023294 194023747 -8304600 + MLT1C LTR MaLR 1 467 0 284 80 0 120 chr4 194023747 194023760 -8304587 + MER63 DNA MER1_type 707 720 -116 2026 132 42 36 chr4 194023761 194023896 -8304451 + MER46B DNA MER2_type 2 17 -2714 2586 178 9 0 chr4 194023896 194024335 -8304012 + L1PB4 LINE L1 5712 6154 -2 2026 132 42 36 chr4 194024335 194024555 -8303792 + MER46B DNA MER2_type 17 234 -2 2366 99 0 3 chr4 194025087 194025389 -8302958 - AluSc SINE Alu -8 301 1 672 265 110 5 chr4 194025425 194025625 -8302722 + MIR SINE MIR 28 248 -14 818 141 8 0 chr4 194026310 194026431 -8301916 + FLAM_A SINE Alu 1 122 -11 2729 14 0 0 chr4 194026467 194026762 -8301585 - AluY SINE Alu -16 295 1 233 36 0 0 chr4 194027364 194027392 -8300955 - MER61A LTR ERV1 0 343 316 1611 166 7 18 chr4 194027433 194027716 -8300631 - MER61A LTR ERV1 0 343 64 1854 145 4 0 chr4 194027862 194028138 -8300209 - AluJb SINE Alu -9 303 27 313 362 0 0 chr4 194029613 194029729 -8298618 + MIR SINE MIR 28 143 -119 2327 50 40 10 chr4 194029749 194030046 -8298301 + AluY SINE Alu 1 306 -5 286 263 76 51 chr4 194030673 194030791 -8297556 + L2 LINE L2 3193 3313 0 2260 105 3 0 chr4 194030792 194031086 -8297261 + AluY SINE Alu 1 295 -16 2137 120 0 3 chr4 194031504 194031803 -8296544 - AluSx SINE Alu -14 298 1 310 226 7 146 chr4 194031903 194032040 -8296307 + MIR SINE MIR 44 161 -101 1784 116 22 0 chr4 194032423 194032700 -8295647 + L1MA4 LINE L1 6018 6300 0 1362 253 120 23 chr4 194033111 194033659 -8294688 - MER115 DNA AcHobo -50 643 6 364 248 36 44 chr4 194034005 194034142 -8294205 + LTR16C LTR ERVL 340 475 -16 10773 116 36 54 chr4 194034145 194034244 -8294103 - Tigger1 DNA MER2_type -1 2417 2318 2218 94 38 3 chr4 194034244 194034532 -8293815 + AluSx SINE Alu 2 299 -13 10773 116 36 54 chr4 194034532 194035131 -8293216 - Tigger1 DNA MER2_type -100 2318 1710 2463 84 3 0 chr4 194035131 194035430 -8292917 + AluSp SINE Alu 1 300 -13 10773 116 36 54 chr4 194035430 194036108 -8292239 - Tigger1 DNA MER2_type -708 1710 1078 1900 151 0 33 chr4 194036108 194036412 -8291935 - AluJb SINE Alu -18 294 1 10773 116 36 54 chr4 194036412 194036844 -8291503 - Tigger1 DNA MER2_type -1340 1078 640 2308 94 7 0 chr4 194037462 194037761 -8290586 + AluSp SINE Alu 1 301 -12 3372 190 30 2 chr4 194038308 194038934 -8289413 - Tigger1 DNA MER2_type -1744 674 31 2304 89 3 0 chr4 194039171 194039462 -8288885 - AluSq SINE Alu -21 292 1 851 148 0 15 chr4 194039925 194040060 -8288287 + FLAM_C SINE Alu 1 133 0 189 123 246 0 chr4 194040109 194040166 -8288181 - MIR3 SINE MIR -9 199 129 2127 120 0 3 chr4 194040289 194040573 -8287774 + AluSq SINE Alu 5 287 -26 254 266 73 18 chr4 194040962 194041071 -8287276 - L2 LINE L2 -6 3266 3152 186 43 0 0 chr4 194041409 194041432 -8286915 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1839 157 34 17 chr4 194041949 194042243 -8286104 + AluJo SINE Alu 1 299 -13 23 33 0 0 chr4 194042772 194042802 -8285545 + AT_rich Low_complexity Low_complexity 1 30 0 1911 172 3 0 chr4 194042859 194043161 -8285186 + AluSx SINE Alu 3 305 -7 261 85 43 0 chr4 194043173 194043220 -8285127 + HAL1b LINE L1 1045 1093 -255 * 3700 224 63 52 chr4 194043215 194043624 -8284723 + L1MDa LINE L1 1328 1731 -4809 6111 18 0 0 chr4 194043624 194044306 -8284041 - L1PA4 LINE L1 0 6155 5474 3700 224 63 52 chr4 194044306 194045238 -8283109 + L1MDa LINE L1 1731 2685 -3855 344 22 22 0 chr4 194045238 194045283 -8283064 + (GAAAA)n Simple_repeat Simple_repeat 5 50 0 2632 65 0 0 chr4 194045321 194045629 -8282718 + AluSp SINE Alu 1 308 -5 276 158 147 21 chr4 194045739 194045834 -8282513 + L1MDa LINE L1 2779 2885 -3655 233 251 55 122 chr4 194045821 194045921 -8282426 + HAL1b LINE L1 1079 1184 -164 * 2438 82 3 0 chr4 194045921 194046098 -8282249 - AluSx SINE Alu -5 307 127 441 0 0 0 chr4 194046098 194046147 -8282200 + (TG)n Simple_repeat Simple_repeat 2 50 0 2438 82 3 0 chr4 194046147 194046275 -8282072 - AluSx SINE Alu -185 127 1 233 251 55 122 chr4 194046275 194046445 -8281902 + HAL1b LINE L1 1184 1331 -17 21 82 0 0 chr4 194046445 194046494 -8281853 + AT_rich Low_complexity Low_complexity 1 49 0 2280 102 0 22 chr4 194046985 194047300 -8281047 + AluY SINE Alu 1 308 -3 1634 162 0 50 chr4 194047761 194048058 -8280289 + AluJo SINE Alu 1 282 -30 785 274 102 41 chr4 194048065 194048080 -8280267 + L1ME LINE L1 4639 4652 -1510 183 100 0 0 chr4 194048080 194048110 -8280237 + (TA)n Simple_repeat Simple_repeat 2 31 0 785 274 102 41 chr4 194048110 194048590 -8279757 + L1ME LINE L1 4652 5101 -1061 2077 94 36 23 chr4 194048590 194048897 -8279450 + AluSx SINE Alu 1 311 -1 785 274 102 41 chr4 194048897 194049179 -8279168 + L1ME LINE L1 5101 5364 -798 2663 91 8 0 chr4 194049179 194049531 -8278816 - THE1A LTR MaLR 0 355 1 11804 90 9 2 chr4 194049531 194051100 -8277247 - THE1A-int LTR MaLR 0 1580 1 2785 82 3 0 chr4 194051100 194051454 -8276893 - THE1A LTR MaLR 0 355 1 785 274 102 41 chr4 194051454 194051744 -8276603 + L1ME LINE L1 5363 5776 -386 2280 91 10 13 chr4 194052139 194052447 -8275900 - AluSc SINE Alu -2 307 1 1278 179 62 117 chr4 194052478 194052864 -8275483 + MLT1A1 LTR MaLR 1 365 0 1524 163 65 22 chr4 194054130 194054407 -8273940 + AluJo SINE Alu 9 297 -15 180 0 0 0 chr4 194054510 194054530 -8273817 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 917 114 0 36 chr4 194054632 194054772 -8273575 + MER1B DNA MER1_type 205 339 0 728 175 0 0 chr4 194054772 194054884 -8273463 - MER6B DNA MER2_type -161 115 4 2240 100 7 0 chr4 194055011 194055302 -8273045 - AluSx SINE Alu -19 293 1 409 304 14 22 chr4 194055498 194055636 -8272711 + MIR SINE MIR 117 253 -9 1366 110 176 206 chr4 194055833 194056407 -8271940 + pTR5 LTR ERV1 1739 2295 -143 412 248 103 0 chr4 194056419 194056536 -8271811 + MLT1E1 LTR MaLR 518 646 -8 332 286 133 44 chr4 194056720 194056923 -8271424 - MIR SINE MIR -17 245 25 267 186 0 0 chr4 194057375 194057418 -8270929 - Tigger2a DNA MER2_type -1 433 391 223 227 13 60 chr4 194057840 194057990 -8270357 + G-rich Low_complexity Low_complexity 1 143 0 2416 66 0 0 chr4 194058431 194058717 -8269630 - AluSg SINE Alu -24 286 1 21 36 0 0 chr4 194058790 194058818 -8269529 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr4 194059026 194059061 -8269286 + AT_rich Low_complexity Low_complexity 1 35 0 2256 98 3 3 chr4 194059064 194059360 -8268987 + AluSg SINE Alu 1 296 -14 1208 152 24 14 chr4 194059368 194059579 -8268768 - L1PA16 LINE L1 -9 6157 5945 3220 125 37 115 chr4 194059729 194060300 -8268047 + Tigger1 DNA MER2_type 1799 2312 -106 2218 94 38 3 chr4 194060300 194060588 -8267759 - AluSx SINE Alu -13 299 2 3220 125 37 115 chr4 194060588 194060687 -8267660 + Tigger1 DNA MER2_type 2312 2417 -1 381 214 43 43 chr4 194060690 194060807 -8267540 - LTR16C LTR ERVL -16 475 359 296 206 73 0 chr4 194061171 194061239 -8267108 + MER115 DNA AcHobo 6 78 -615 578 320 93 27 chr4 194061320 194061654 -8266693 + MER115 DNA AcHobo 223 578 -115 3217 163 95 32 chr4 194062109 194062759 -8265588 + LTR8 LTR ERV1 1 691 0 2171 110 3 7 chr4 194062915 194063225 -8265122 + L1P3 LINE L1 10 318 -6143 298 267 13 0 chr4 194063328 194063403 -8264944 - MER21B LTR ERV1 -773 90 15 1643 144 14 10 chr4 194063434 194063725 -8264622 - L1PA16 LINE L1 -13 6153 5862 849 184 0 0 chr4 194063807 194063943 -8264404 - LTR26B LTR ERV1 -24 507 372 318 115 0 39 chr4 194064158 194064210 -8264137 + MER72 LTR ERV1 1 50 -672 496 144 89 0 chr4 194064212 194064302 -8264045 + MER4A LTR ERV1 1 98 -566 1616 153 5 92 chr4 194064302 194064680 -8263667 + MER4A LTR ERV1 261 664 0 1471 131 13 103 chr4 194064683 194064836 -8263511 + MER72 LTR ERV1 52 164 -558 2185 128 3 10 chr4 194064836 194065148 -8263199 - AluSx SINE Alu -2 310 1 1471 131 13 103 chr4 194065148 194065306 -8263041 + MER72 LTR ERV1 164 335 -387 1573 189 64 29 chr4 194065693 194066308 -8262039 - LTR62 LTR ERVK -2 717 1 2369 74 3 10 chr4 194066707 194067004 -8261343 + AluSg SINE Alu 3 297 -13 1070 165 4 58 chr4 194067506 194067749 -8260598 + L1MA8 LINE L1 6044 6273 -18 1151 199 217 21 chr4 194067827 194067896 -8260451 - MSTB2 LTR MaLR 0 457 403 2282 107 0 7 chr4 194067896 194068196 -8260151 + AluSx SINE Alu 1 298 -14 1151 199 217 21 chr4 194068196 194068508 -8259839 - MSTB2 LTR MaLR -54 403 1 559 119 0 12 chr4 194068519 194068603 -8259744 + Tigger2a DNA MER2_type 9 91 -343 205 213 0 43 chr4 194068852 194068899 -8259448 - MIR SINE MIR -6 256 212 2207 128 3 0 chr4 194069464 194069760 -8258587 - AluSx SINE Alu -15 297 1 2382 90 3 3 chr4 194069994 194070304 -8258043 - AluSp SINE Alu -3 310 1 935 272 105 40 chr4 194070370 194070818 -8257529 - L1ME3 LINE L1 -295 5867 5391 243 152 0 0 chr4 194071597 194071643 -8256704 + T-rich Low_complexity Low_complexity 1 46 0 3912 144 28 35 chr4 194071739 194072447 -8255900 + Tigger2 DNA MER2_type 55 757 -1961 1605 142 24 4 chr4 194072501 194072754 -8255593 + Tigger2 DNA MER2_type 2461 2718 0 603 220 129 30 chr4 194072754 194072986 -8255361 + L1ME3A LINE L1 5908 6162 -8 2373 66 10 0 chr4 194073564 194073852 -8254495 + AluSg SINE Alu 4 294 -16 2510 71 0 0 chr4 194073854 194074162 -8254185 + AluY SINE Alu 1 308 -3 2099 108 11 0 chr4 194074913 194075199 -8253148 + AluSg SINE Alu 1 289 -21 2438 83 3 0 chr4 194076000 194076300 -8252047 + AluSg SINE Alu 1 301 -9 1557 181 32 11 chr4 194076343 194076620 -8251727 - AluJb SINE Alu -21 291 9 278 306 42 78 chr4 194076652 194076777 -8251570 - MER5A DNA MER1_type -3 186 69 1760 166 44 75 chr4 194076777 194077258 -8251089 - MER31B LTR ERV1 0 466 1 278 306 42 78 chr4 194077258 194077325 -8251022 - MER5A DNA MER1_type -120 69 1 889 180 62 31 chr4 194077486 194077680 -8250667 - MER21B LTR ERV1 -102 761 562 1773 155 3 57 chr4 194077683 194077845 -8250502 - LTR26B LTR ERV1 0 531 395 2257 93 0 20 chr4 194077845 194078147 -8250200 - AluSc SINE Alu -13 296 1 1773 155 3 57 chr4 194078147 194078319 -8250028 - LTR26B LTR ERV1 -136 395 215 2095 112 0 17 chr4 194078515 194078811 -8249536 + AluSx SINE Alu 1 291 -21 543 278 83 6 chr4 194079132 194079344 -8249003 + MIR SINE MIR 16 241 -21 2272 109 0 7 chr4 194080208 194080512 -8247835 - AluSq SINE Alu -11 302 1 2397 87 0 7 chr4 194080523 194080823 -8247524 - AluSq SINE Alu -15 298 1 1067 269 128 16 chr4 194081669 194082100 -8246247 - MER76 LTR ERV -11 677 199 2293 103 0 3 chr4 194082267 194082568 -8245779 - AluSg SINE Alu -10 300 1 1986 102 0 59 chr4 194082743 194083088 -8245259 + AluSq SINE Alu 1 327 0 195 42 0 0 chr4 194083129 194083153 -8245194 + (T)n Simple_repeat Simple_repeat 1 24 0 201 176 0 0 chr4 194083221 194083255 -8245092 + T-rich Low_complexity Low_complexity 1 34 0 1755 188 22 27 chr4 194084093 194084460 -8243887 - L1MDa LINE L1 -6142 398 34 2240 216 54 29 chr4 194084649 194085278 -8243069 - L1ME2 LINE L1 -17 6147 5503 1793 164 0 45 chr4 194085838 194085985 -8242362 + AluJb SINE Alu 1 128 -184 2321 112 0 0 chr4 194085985 194086279 -8242068 + AluSx SINE Alu 1 294 -18 1793 164 0 45 chr4 194086279 194086443 -8241904 + AluJb SINE Alu 128 298 -14 193 209 0 0 chr4 194086735 194086778 -8241569 + MIR SINE MIR 109 151 -57 1489 217 24 111 chr4 194087114 194087662 -8240685 + MLT1E1 LTR MaLR 3 502 -152 2281 97 10 0 chr4 194088405 194088703 -8239644 + AluY SINE Alu 2 302 -9 23 0 0 0 chr4 194088976 194088999 -8239348 + AT_rich Low_complexity Low_complexity 1 23 0 2271 102 3 7 chr4 194089591 194089894 -8238453 + AluSx SINE Alu 1 302 -10 184 340 75 0 chr4 194090661 194090755 -8237592 + L2 LINE L2 2871 2971 -301 258 292 0 0 chr4 194090824 194090896 -8237451 + MLT1J LTR MaLR 1 72 -439 583 298 67 13 chr4 194091076 194091301 -8237046 + MIR SINE MIR 22 258 -4 245 155 0 35 chr4 194091521 194091579 -8236768 + (TAA)n Simple_repeat Simple_repeat 1 56 0 1884 242 34 44 chr4 194092638 194093254 -8235093 + MER90 LTR ERV1 5 614 0 2362 82 7 0 chr4 194093324 194093617 -8234730 - AluSg SINE Alu -15 295 1 320 292 148 0 chr4 194093800 194094036 -8234311 - L1ME4a LINE L1 -174 5947 5677 258 306 94 24 chr4 194094006 194094176 -8234171 + L1MC/D LINE L1 5667 5848 -1960 * 2135 101 31 0 chr4 194094355 194094642 -8233705 - AluSq SINE Alu -15 298 3 1855 166 0 0 chr4 194094741 194095025 -8233322 - AluJb SINE Alu -28 284 1 1934 160 3 0 chr4 194095145 194095451 -8232896 + AluJb SINE Alu 1 307 -5 21 82 0 0 chr4 194095718 194095767 -8232580 + AT_rich Low_complexity Low_complexity 1 49 0 414 241 185 60 chr4 194095839 194095919 -8232428 - MER2 DNA MER2_type -6 339 270 2080 117 9 25 chr4 194095919 194096236 -8232111 + AluSx SINE Alu 1 312 0 414 241 185 60 chr4 194096236 194096420 -8231927 - MER2 DNA MER2_type -75 270 42 628 133 58 87 chr4 194096776 194096949 -8231398 - MER1B DNA MER1_type -105 192 25 350 196 98 11 chr4 194096969 194097061 -8231286 + MER6 DNA MER2_type 44 864 -1 1041 175 0 0 chr4 194097109 194097275 -8231072 - FRAM SINE Alu 0 166 1 2319 99 0 0 chr4 194097757 194098059 -8230288 + AluSx SINE Alu 1 302 -10 25 75 0 0 chr4 194098416 194098469 -8229878 + AT_rich Low_complexity Low_complexity 1 53 0 1695 276 27 19 chr4 194098688 194099315 -8229032 + L1M4 LINE L1 4392 5023 -1123 622 162 162 0 chr4 194099316 194099433 -8228914 + AluJo SINE Alu 2 137 -175 210 118 0 0 chr4 194099458 194099492 -8228855 + (GA)n Simple_repeat Simple_repeat 2 35 0 397 91 130 26 chr4 194099503 194099657 -8228690 + GA-rich Low_complexity Low_complexity 4 173 0 340 163 52 20 chr4 194099810 194099963 -8228384 + (CACAC)n Simple_repeat Simple_repeat 4 161 0 518 348 77 26 chr4 194100545 194101088 -8227259 + L2 LINE L2 865 1435 -1879 4367 142 177 26 chr4 194101408 194102403 -8225944 - MER11B LTR ERVK 0 1236 1 1177 271 113 18 chr4 194102407 194102857 -8225490 - L1MC/D LINE L1 -2062 5746 5254 244 156 325 0 chr4 194102979 194103056 -8225291 - L1ME4a LINE L1 0 6121 6020 21 36 0 0 chr4 194104493 194104521 -8223826 + AT_rich Low_complexity Low_complexity 1 28 0 386 127 32 0 chr4 194106260 194106323 -8222024 - AluS SINE Alu -6 296 232 23 68 0 0 chr4 194106686 194106730 -8221617 + AT_rich Low_complexity Low_complexity 1 44 0 370 315 8 24 chr4 194106830 194106957 -8221390 - L2 LINE L2 -5 3267 3143 992 250 131 28 chr4 194106963 194107376 -8220971 - MLT1J LTR MaLR -7 439 22 204 269 134 15 chr4 194107678 194107745 -8220602 - MIR SINE MIR -110 152 78 388 282 83 19 chr4 194107791 194107947 -8220400 - MIR SINE MIR -74 188 23 2041 138 3 3 chr4 194108087 194108385 -8219962 - AluSx SINE Alu -11 301 4 25 31 0 0 chr4 194108447 194108479 -8219868 + AT_rich Low_complexity Low_complexity 1 32 0 1822 158 39 0 chr4 194108775 194109054 -8219293 + AluSx SINE Alu 1 290 -22 2308 68 3 10 chr4 194109903 194110195 -8218152 - AluSc SINE Alu -19 290 1 556 264 143 19 chr4 194110615 194110937 -8217410 + L2 LINE L2 2131 2492 -822 27 0 0 0 chr4 194111596 194111623 -8216724 + AT_rich Low_complexity Low_complexity 1 27 0 2450 61 3 16 chr4 194111685 194111997 -8216350 + AluY SINE Alu 1 308 -3 204 305 67 9 chr4 194113379 194113484 -8214863 - MIR SINE MIR -74 188 78 1808 165 20 0 chr4 194113747 194114044 -8214303 - AluJb SINE Alu -9 303 1 192 256 200 11 chr4 194115221 194115311 -8213036 + MIR SINE MIR 16 122 -140 231 139 25 13 chr4 194115571 194115650 -8212697 + (TTGTG)n Simple_repeat Simple_repeat 4 83 0 277 279 59 52 chr4 194116388 194116524 -8211823 - MIR SINE MIR -122 140 4 669 213 33 60 chr4 194116833 194116923 -8211424 - MER58A DNA MER1_type -2198 222 138 1987 129 0 29 chr4 194116923 194117234 -8211113 - AluJo SINE Alu -10 302 1 669 213 33 60 chr4 194117234 194117326 -8211021 - MER58A DNA MER1_type -2282 138 45 342 189 142 47 chr4 194118773 194118879 -8209468 - L1ME3 LINE L1 -1 6161 6046 2125 135 10 0 chr4 194119057 194119361 -8208986 - AluJo SINE Alu -5 307 1 221 269 0 0 chr4 194119517 194119569 -8208778 - L2 LINE L2 -11 3261 3210 231 125 0 0 chr4 194119793 194119833 -8208514 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 588 129 242 0 chr4 194120035 194120159 -8208188 - L1MB3 LINE L1 -7 6176 6023 210 235 92 41 chr4 194120490 194120588 -8207759 - L2 LINE L2 -33 3280 3178 887 176 7 0 chr4 194120616 194120769 -8207578 - Tigger7 DNA MER2_type -19 2468 2315 496 135 14 0 chr4 194120765 194120839 -8207508 - Tigger7 DNA MER2_type -242 308 234 * 2159 75 14 14 chr4 194121566 194121859 -8206488 - AluSq SINE Alu -20 293 1 784 135 17 22 chr4 194122755 194122933 -8205414 + GA-rich Low_complexity Low_complexity 2 178 0 1009 78 8 0 chr4 194123327 194123455 -8204892 - AluSg SINE Alu -180 130 2 2449 70 3 13 chr4 194124260 194124572 -8203775 - AluY SINE Alu -2 309 1 2120 128 7 10 chr4 194124826 194125130 -8203217 - AluSq SINE Alu -10 303 1 2190 108 7 0 chr4 194125145 194125440 -8202907 - AluSg SINE Alu -13 297 1 276 182 23 136 chr4 194125703 194125835 -8202512 - MLT1H LTR MaLR -2 547 431 2740 138 13 17 chr4 194125955 194126113 -8202234 + L1MC1 LINE L1 5858 6015 -318 2404 70 17 0 chr4 194126113 194126414 -8201933 - AluSg SINE Alu -4 306 1 2740 138 13 17 chr4 194126414 194126733 -8201614 + L1MC1 LINE L1 6015 6333 0 2480 48 0 3 chr4 194127479 194127768 -8200579 + AluY SINE Alu 21 308 -3 264 298 112 28 chr4 194129193 194129371 -8198976 - MIR SINE MIR -35 227 35 1772 169 7 7 chr4 194129674 194129982 -8198365 + AluJo SINE Alu 1 308 -4 256 291 31 110 chr4 194130865 194130992 -8197355 - L2 LINE L2 0 3272 3156 219 236 81 130 chr4 194131849 194131972 -8196375 - L2 LINE L2 -25 3288 3172 337 302 53 28 chr4 194133014 194133196 -8195151 - MIR SINE MIR -61 201 18 299 148 0 16 chr4 194133566 194133627 -8194720 + (TTC)n Simple_repeat Simple_repeat 1 60 0 2292 70 3 0 chr4 194133952 194134277 -8194070 + AluSp SINE Alu 1 326 0 2339 94 0 7 chr4 194134863 194135162 -8193185 + AluSx SINE Alu 1 297 -15 2032 134 0 7 chr4 194136061 194136359 -8191988 - AluSq SINE Alu -17 296 1 2232 98 22 35 chr4 194136402 194136719 -8191628 - AluSq SINE Alu 0 313 1 186 133 0 0 chr4 194136971 194137001 -8191346 + (TG)n Simple_repeat Simple_repeat 2 31 0 2038 104 11 4 chr4 194137663 194137941 -8190406 + AluSx SINE Alu 1 280 -32 183 80 0 0 chr4 194137941 194137966 -8190381 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 27 29 0 0 chr4 194138399 194138433 -8189914 + AT_rich Low_complexity Low_complexity 1 34 0 382 289 78 8 chr4 194138536 194138664 -8189683 - MIR3 SINE MIR -5 203 67 396 0 0 0 chr4 194139261 194139305 -8189042 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2101 131 0 0 chr4 194139307 194139590 -8188757 - AluSx SINE Alu -29 283 1 1555 205 42 32 chr4 194139847 194140256 -8188091 + MER49 LTR ERV1 310 923 0 3732 130 33 12 chr4 194140758 194141341 -8187006 + LTR49 LTR ERV1 1 595 0 1681 144 35 25 chr4 194141410 194141695 -8186652 + AluJo SINE Alu 5 292 -20 1726 135 51 36 chr4 194141824 194141890 -8186457 + LTR56 LTR ERV1 1 65 -380 2099 112 14 0 chr4 194141890 194142175 -8186172 - AluSx SINE Alu -23 289 1 1726 135 51 36 chr4 194142175 194142441 -8185906 + LTR56 LTR ERV1 65 338 -107 198 0 0 0 chr4 194142558 194142580 -8185767 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1035 87 0 0 chr4 194142608 194142734 -8185613 - AluY SINE Alu -185 126 1 789 124 0 8 chr4 194142734 194142855 -8185492 + MER41A LTR ERV1 435 554 0 2490 174 87 8 chr4 194142974 194143446 -8184901 - LTR22 LTR ERVK 0 509 1 2252 90 0 72 chr4 194143760 194144095 -8184252 + AluSq SINE Alu 1 311 -2 718 161 42 0 chr4 194144289 194144419 -8183928 - LTR54 LTR ERV1 0 510 375 3789 119 50 2 chr4 194144419 194145000 -8183347 + MER4B LTR ERV1 1 465 0 722 131 123 5 chr4 194145000 194145217 -8183130 - LTR54B LTR ERV1 -132 378 49 192 77 0 0 chr4 194145217 194145243 -8183104 + (GTCTG)n Simple_repeat Simple_repeat 4 29 0 722 131 123 5 chr4 194145243 194145297 -8183050 - LTR54B LTR ERV1 -461 49 3 631 254 140 22 chr4 194145467 194145695 -8182652 - MIR SINE MIR -7 255 1 323 177 76 51 chr4 194145783 194145862 -8182485 - L2 LINE L2 -5 3308 3228 4102 175 89 22 chr4 194145924 194146731 -8181616 + MER21B LTR ERV1 3 863 0 2024 112 0 0 chr4 194146926 194147195 -8181152 + AluSg SINE Alu 18 286 -24 204 238 0 38 chr4 194147812 194147892 -8180455 + C-rich Low_complexity Low_complexity 5 81 0 906 249 145 43 chr4 194148012 194148109 -8180238 - MER119 DNA MER1_type -149 434 348 1475 166 13 67 chr4 194148109 194148423 -8179924 - AluJo SINE Alu -15 297 1 906 249 145 43 chr4 194148423 194148508 -8179839 - MER119 DNA MER1_type -235 348 273 2304 82 0 16 chr4 194148508 194148813 -8179534 - AluSg SINE Alu -10 300 1 906 249 145 43 chr4 194148813 194149023 -8179324 - MER119 DNA MER1_type -310 273 1 280 262 58 52 chr4 194149194 194149366 -8178981 - L1M4 LINE L1 -2636 3510 3338 1524 104 0 0 chr4 194149503 194149737 -8178610 - AluSg/x SINE Alu 0 314 81 436 281 165 36 chr4 194149768 194150355 -8177992 - L1M4 LINE L1 -3083 3063 2401 268 270 17 26 chr4 194150404 194150519 -8177828 - L1M4 LINE L1 -3840 2306 2193 446 244 169 0 chr4 194150991 194151163 -8177184 - L1ME LINE L1 -350 5771 5571 2263 117 7 0 chr4 194151248 194151556 -8176791 + AluSx SINE Alu 1 310 -2 582 303 109 0 chr4 194151741 194152008 -8176339 - L1ME LINE L1 -2210 5598 5303 344 299 96 15 chr4 194152700 194152897 -8175450 - L1MC4 LINE L1 -23 8019 7807 744 128 26 26 chr4 194152902 194153019 -8175328 - FLAM_A SINE Alu -20 122 6 280 253 116 34 chr4 194153285 194153431 -8174916 + MARNA DNA Mariner 327 484 -102 203 136 45 0 chr4 194155733 194155777 -8172570 + (TA)n Simple_repeat Simple_repeat 2 47 0 1240 126 10 20 chr4 194155949 194156147 -8172200 - AluJb SINE Alu -18 294 99 1716 179 13 19 chr4 194156875 194157187 -8171160 - AluJo SINE Alu -2 310 1 2217 51 20 7 chr4 194157806 194158098 -8170249 - AluY SINE Alu -12 299 4 1982 146 7 0 chr4 194158101 194158402 -8169945 - AluSx SINE Alu -9 303 1 328 269 0 0 chr4 194159488 194159555 -8168792 + MIR SINE MIR 83 149 -59 2316 63 7 3 chr4 194159670 194159957 -8168390 - AluSx SINE Alu -12 300 13 347 279 81 15 chr4 194160034 194160170 -8168177 + MIR SINE MIR 15 159 -103 2106 91 3 11 chr4 194160266 194160578 -8167769 + AluY SINE Alu 1 310 0 295 242 110 11 chr4 194160647 194160738 -8167609 + MIR SINE MIR 157 256 -6 2266 90 14 0 chr4 194160887 194161175 -8167172 - AluSx SINE Alu -20 292 1 802 235 27 32 chr4 194161519 194161740 -8166607 - MIR SINE MIR 0 262 43 32259 100 13 32 chr4 194161889 194164404 -8163943 + L1PA7 LINE L1 377 2937 -3217 2440 87 0 3 chr4 194164404 194164713 -8163634 + AluY SINE Alu 1 308 -3 32259 100 13 32 chr4 194164713 194165031 -8163316 + L1PA7 LINE L1 2937 3259 -2895 2148 123 7 3 chr4 194165031 194165332 -8163015 + AluSq SINE Alu 1 302 -11 32259 100 13 32 chr4 194165332 194165415 -8162932 + L1PA7 LINE L1 3259 3342 -2812 4104 89 0 6 chr4 194165415 194165929 -8162418 + MER9 LTR ERVK 1 511 0 32259 100 13 32 chr4 194165929 194168903 -8159444 + L1PA7 LINE L1 3342 6153 -1 2149 106 0 7 chr4 194168907 194169190 -8159157 + AluSg SINE Alu 1 281 -29 296 119 0 134 chr4 194169226 194169293 -8159054 + MER4D LTR ERV1 615 672 -200 1803 121 0 4 chr4 194169362 194169665 -8158682 - AluSx SINE Alu 0 312 37 1683 106 13 4 chr4 194169855 194170092 -8158255 - AluSp SINE Alu -74 239 1 2131 137 38 19 chr4 194170115 194170480 -8157867 + LTR8 LTR ERV1 312 683 -8 229 189 158 32 chr4 194170546 194170641 -8157706 - LTR35 LTR ERV1 -69 549 443 302 250 23 11 chr4 194170714 194170802 -8157545 - LTR43 LTR ERV1 -325 277 189 997 157 43 5 chr4 194170995 194171180 -8157167 + MER4D LTR ERV1 679 870 -33 302 333 9 0 chr4 194221671 194221779 -8106568 + L2 LINE L2 3186 3294 -19 1684 184 3 0 chr4 194221990 194222283 -8106064 - AluJo SINE Alu -18 294 1 1520 183 28 7 chr4 194225615 194225900 -8102447 + AluJo SINE Alu 13 303 -9 4211 32 36 6 chr4 194226092 194226617 -8101730 - L1PA4 LINE L1 0 6155 5615 3227 28 11 0 chr4 194226617 194227151 -8101196 + L1PA4 LINE L1 5095 5632 -523 332 262 170 0 chr4 194227930 194228071 -8100276 - MIR SINE MIR -75 187 23 2350 89 0 34 chr4 194229692 194230016 -8098331 + AluSq SINE Alu 1 313 0 265 295 90 81 chr4 194231994 194232228 -8096119 + MIR SINE MIR 23 258 -4 * 273 283 124 28 chr4 194232200 194232345 -8096002 + L2 LINE L2 3144 3302 -11 210 86 0 0 chr4 194233326 194233342 -8095005 + (CA)n Simple_repeat Simple_repeat 2 17 -19 1429 158 43 43 chr4 194233342 194233646 -8094701 + L1MA8 LINE L1 5987 6290 -1 210 86 0 0 chr4 194233646 194233664 -8094683 + (CA)n Simple_repeat Simple_repeat 16 36 0 1413 199 144 29 chr4 194234633 194234850 -8093497 + L1MB8 LINE L1 5449 5640 -538 1920 142 0 7 chr4 194234850 194235152 -8093195 + AluJb SINE Alu 1 300 -12 1413 199 144 29 chr4 194235152 194235528 -8092819 + L1MB8 LINE L1 5640 6177 -1 470 306 67 6 chr4 194235955 194236135 -8092212 - MIR SINE MIR -50 212 22 1820 120 11 7 chr4 194236637 194236920 -8091427 + AluSx SINE Alu 1 284 -28 225 0 0 0 chr4 194236920 194236945 -8091402 + (TA)n Simple_repeat Simple_repeat 2 26 0 250 229 129 0 chr4 194237542 194237612 -8090735 + L2 LINE L2 3194 3272 0 1510 68 0 0 chr4 194238374 194238566 -8089781 + L1PA4 LINE L1 5961 6152 -3 226 118 0 0 chr4 194238646 194238680 -8089667 - LTR51 LTR ERV1 -375 296 263 2128 108 0 0 chr4 194238695 194238983 -8089364 + AluSx SINE Alu 5 292 -20 236 214 43 71 chr4 194240334 194240404 -8087943 + MLT1B LTR MaLR 1 68 -306 439 70 0 0 chr4 194243009 194243066 -8085281 - Alu SINE Alu -24 286 230 32 75 0 0 chr4 194243142 194243209 -8085138 + AT_rich Low_complexity Low_complexity 1 67 0 1486 162 41 4 chr4 194245034 194245300 -8083047 + AluJb SINE Alu 1 276 -36 195 42 0 0 chr4 194245300 194245324 -8083023 + (TATG)n Simple_repeat Simple_repeat 3 26 0 377 226 22 7 chr4 194245327 194245464 -8082883 + GA-rich Low_complexity Low_complexity 2 140 0 243 173 0 0 chr4 194245617 194245669 -8082678 + GA-rich Low_complexity Low_complexity 1 52 0 421 289 188 39 chr4 194246332 194246588 -8081759 + L2 LINE L2 2974 3267 -5 23 0 0 0 chr4 194246781 194246804 -8081543 + AT_rich Low_complexity Low_complexity 1 23 0 2848 60 14 0 chr4 194246979 194247329 -8081018 + THE1A LTR MaLR 1 355 0 2351 78 3 0 chr4 194247713 194248019 -8080328 - AluSp SINE Alu -5 308 2 2046 98 30 0 chr4 194248805 194249102 -8079245 + AluSx SINE Alu 1 306 -6 1994 140 0 6 chr4 194249445 194249759 -8078588 - AluSx SINE Alu 0 312 1 321 204 45 57 chr4 194250182 194250270 -8078077 + L2 LINE L2 3186 3272 0 229 288 15 0 chr4 194251388 194251454 -8076893 - L2 LINE L2 -698 2616 2550 2106 114 0 3 chr4 194251486 194251816 -8076531 - AluSx SINE Alu 0 343 15 882 238 53 36 chr4 194251838 194252119 -8076228 - L2 LINE L2 -798 2516 2231 271 316 44 18 chr4 194252237 194252351 -8075996 - L2 LINE L2 -1 3312 3196 1473 124 62 11 chr4 194252352 194252626 -8075721 - MER33 DNA MER1_type 0 324 37 1441 160 41 75 chr4 194253696 194254014 -8074333 - AluJo SINE Alu -3 309 3 456 306 96 16 chr4 194254135 194254449 -8073898 - LTR16B LTR ERVL -94 370 32 394 322 95 24 chr4 194254546 194254757 -8073590 + MIR SINE MIR 5 230 -32 2257 86 3 0 chr4 194255201 194255502 -8072845 - AluSx SINE Alu -10 302 1 342 313 22 8 chr4 194256151 194256285 -8072062 + MER5A DNA MER1_type 1 136 -53 2120 105 7 0 chr4 194256340 194256635 -8071712 + AluSq SINE Alu 3 299 -14 2329 97 0 0 chr4 194256822 194257130 -8071217 + AluSx SINE Alu 1 308 -4 207 204 0 0 chr4 194257593 194257642 -8070705 + (TGGA)n Simple_repeat Simple_repeat 3 51 0 326 352 28 28 chr4 194257644 194257820 -8070527 - L2 LINE L2 -180 3092 2917 2274 110 0 0 chr4 194257898 194258206 -8070141 + AluSg SINE Alu 1 308 -2 202 234 106 85 chr4 194258211 194258305 -8070042 + L2 LINE L2 3174 3269 -44 185 347 153 0 chr4 194258350 194258474 -8069873 + L2 LINE L2 2814 2956 -357 342 129 17 25 chr4 194258681 194258750 -8069597 + FLAM SINE Alu 70 125 -8 1774 166 0 22 chr4 194259284 194259603 -8068744 + AluJb SINE Alu 1 312 0 679 171 77 98 chr4 194260053 194260388 -8067959 - MER69 DNA AcHobo 0 2526 2229 991 168 134 0 chr4 194260388 194260620 -8067727 - L1MC3 LINE L1 -1 7784 7522 1374 141 5 0 chr4 194260794 194261007 -8067340 - L1MC3 LINE L1 -235 7550 7337 261 162 176 0 chr4 194261007 194261075 -8067272 - MER69 DNA AcHobo -289 2237 2158 1513 312 54 20 chr4 194261119 194261709 -8066638 - MER69 DNA AcHobo -1911 615 6 279 317 130 8 chr4 194262335 194262458 -8065889 + MIR SINE MIR 14 151 -111 382 235 25 25 chr4 194262461 194262580 -8065767 - MER104 DNA Tc2 -3 177 59 893 244 67 60 chr4 194262582 194262897 -8065450 - MLT1H LTR MaLR -2 547 231 232 214 0 0 chr4 194262963 194263005 -8065342 - MIR SINE MIR -205 57 16 252 322 17 26 chr4 194263230 194263345 -8065002 + MIR SINE MIR 148 261 -1 1944 127 3 0 chr4 194263868 194264187 -8064160 - AluSx SINE Alu 0 320 1 359 301 130 16 chr4 194264853 194264976 -8063371 + MIR3 SINE MIR 10 146 -62 294 215 0 63 chr4 194265120 194265199 -8063148 - L2 LINE L2 -1 3271 3198 225 288 0 14 chr4 194266178 194266251 -8062096 - LTR67 LTR ERVL -14 543 472 2038 97 21 14 chr4 194266717 194267006 -8061341 - AluSx SINE Alu -19 293 3 184 286 86 100 chr4 194267152 194267372 -8060975 - L2 LINE L2 -466 2848 2632 * 208 292 56 56 chr4 194267363 194267524 -8060823 + MIR3 SINE MIR 43 203 -5 1469 187 19 45 chr4 194267623 194267933 -8060414 - AluJo SINE Alu 0 302 1 262 186 23 0 chr4 194267963 194268006 -8060341 - Alu SINE Alu -258 44 1 524 244 71 95 chr4 194268006 194268289 -8060058 - L2 LINE L2 -10 3303 3028 2085 83 0 0 chr4 194268428 194268693 -8059654 + AluY SINE Alu 24 288 -23 234 162 0 0 chr4 194268858 194268895 -8059452 - MIR SINE MIR -224 38 2 404 273 53 8 chr4 194269001 194269133 -8059214 - MIR3 SINE MIR -26 182 45 1355 189 21 96 chr4 194269276 194269330 -8059017 + MLT1B LTR MaLR 1 57 -333 2120 95 0 3 chr4 194269330 194269636 -8058711 - AluSx SINE Alu 0 307 3 1355 189 21 96 chr4 194269636 194269999 -8058348 + MLT1B LTR MaLR 57 388 -2 592 293 170 0 chr4 194270394 194270606 -8057741 + MIR SINE MIR 15 262 0 201 97 0 65 chr4 194271334 194271396 -8056951 + (CGGGG)n Simple_repeat Simple_repeat 5 62 0 23 54 0 0 chr4 194271604 194271641 -8056706 + GC_rich Low_complexity Low_complexity 1 37 0 25 51 0 0 chr4 194271814 194271853 -8056494 + GC_rich Low_complexity Low_complexity 1 39 0 1947 121 20 3 chr4 194273065 194273362 -8054985 + AluSx SINE Alu 4 305 -7 1608 160 13 19 chr4 194274723 194275030 -8053317 - AluJb SINE Alu -7 305 1 509 133 0 0 chr4 194275252 194275335 -8053012 + FLAM_A SINE Alu 60 142 0 230 238 0 0 chr4 194275473 194275536 -8052811 - L1ME4a LINE L1 0 6121 6059 513 230 115 28 chr4 194275545 194275797 -8052550 - L1ME4a LINE L1 -105 6016 5743 606 236 199 16 chr4 194276360 194276551 -8051796 - MIR SINE MIR -35 227 2 1948 98 79 0 chr4 194276605 194276882 -8051465 + AluSg SINE Alu 1 299 -11 1481 71 0 0 chr4 194277169 194277352 -8050995 + AluY SINE Alu 1 183 -128 2243 103 0 0 chr4 194278043 194278345 -8050002 + AluSx SINE Alu 1 302 -10 332 210 20 60 chr4 194279983 194280083 -8048264 + Charlie7 DNA MER1_type 6 101 -2511 180 234 117 90 chr4 194280421 194280532 -8047815 + L2 LINE L2 3197 3310 -3 313 225 113 81 chr4 194280737 194280897 -8047450 + L1MC5 LINE L1 7753 7917 -44 1673 128 25 7 chr4 194281353 194281634 -8046713 - AluSx SINE Alu -13 299 14 321 231 34 51 chr4 194282886 194283003 -8045344 - L1ME4a LINE L1 -30 6091 5977 2417 59 0 3 chr4 194283172 194283477 -8044870 - AluY SINE Alu -7 304 1 225 0 0 0 chr4 194284431 194284456 -8043891 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 199 289 108 60 chr4 194285180 194285263 -8043084 - L2 LINE L2 -2 3270 3184 1536 196 37 25 chr4 194285641 194286063 -8042284 - L1MB4 LINE L1 0 6180 5717 2280 78 0 13 chr4 194286074 194286380 -8041967 + AluY SINE Alu 1 302 -9 232 335 77 26 chr4 194286524 194286679 -8041668 + MIR SINE MIR 82 244 -18 210 37 0 0 chr4 194286737 194286764 -8041583 + (CCTAT)n Simple_repeat Simple_repeat 1 27 0 1115 246 71 77 chr4 194286966 194287644 -8040703 + L1MEc LINE L1 1598 2271 -4125 266 219 298 18 chr4 194287714 194287828 -8040519 + L1MEc LINE L1 2650 2795 -3420 359 214 89 18 chr4 194287840 194287952 -8040395 + L1MC4a LINE L1 5904 6023 -1785 1902 122 25 3 chr4 194288141 194288427 -8039920 - AluSx SINE Alu -17 295 4 370 250 177 24 chr4 194288432 194288596 -8039751 + L1ME LINE L1 5620 5808 -313 2131 117 0 7 chr4 194288745 194289052 -8039295 - AluSx SINE Alu -7 305 1 300 392 99 11 chr4 194290520 194290783 -8037564 - L2 LINE L2 -96 3176 2891 285 277 108 38 chr4 194290936 194291257 -8037090 + LTR16B LTR ERVL 65 447 -3 246 315 131 44 chr4 194291289 194291860 -8036487 - L2 LINE L2 -558 2756 2136 10677 159 56 20 chr4 194291909 194295185 -8033162 + L1M1 LINE L1 22 4536 -3029 282 29 0 0 chr4 194295508 194295543 -8032804 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 999 239 279 14 chr4 194295610 194296279 -8032068 + L1MC4a LINE L1 5318 6164 -1644 2349 76 0 3 chr4 194296379 194296683 -8031664 + AluSc SINE Alu 1 303 -6 2115 75 0 7 chr4 194296799 194297113 -8031234 + AluY SINE Alu 1 312 0 1342 148 0 0 chr4 194298128 194298338 -8030009 - AluJo SINE Alu -18 294 85 215 235 98 0 chr4 194298467 194298518 -8029829 + L2 LINE L2 3212 3267 -5 3488 152 109 78 chr4 194299065 194299623 -8028724 + L1MB3 LINE L1 5275 5871 -312 1934 98 0 82 chr4 194299623 194299951 -8028396 + AluSx SINE Alu 1 301 -11 3488 152 109 78 chr4 194299951 194300263 -8028084 + L1MB3 LINE L1 5871 6172 -11 3250 167 68 24 chr4 194300282 194300958 -8027389 + L1MB7 LINE L1 5450 6155 -29 525 228 8 0 chr4 194301962 194302085 -8026262 + L1MA6 LINE L1 6177 6300 0 1575 194 30 12 chr4 194302140 194302475 -8025872 - MER58B DNA MER1_type 0 341 1 315 274 55 61 chr4 194303235 194303399 -8024948 + L1ME LINE L1 5518 5680 -441 215 185 167 0 chr4 194304130 194304184 -8024163 - MIR SINE MIR -70 192 130 384 211 13 0 chr4 194304617 194304693 -8023654 - L1MC4 LINE L1 -1 8041 7965 243 0 0 0 chr4 194304700 194304727 -8023620 + (TG)n Simple_repeat Simple_repeat 2 28 0 617 234 58 6 chr4 194304728 194304899 -8023448 - L1MC4 LINE L1 -170 7872 7693 293 241 123 49 chr4 194304908 194305070 -8023277 - MER112 DNA MER1_type -70 190 17 700 194 30 0 chr4 194305095 194305229 -8023118 - MER5A DNA MER1_type 0 189 52 321 274 35 64 chr4 194305232 194305404 -8022943 - MIR SINE MIR -65 197 39 1978 91 56 0 chr4 194305538 194305823 -8022524 + AluSg SINE Alu 1 301 -9 30 0 0 0 chr4 194306844 194306874 -8021473 + GC_rich Low_complexity Low_complexity 1 30 0 255 297 78 3 chr4 194307290 194307400 -8020947 + MIR SINE MIR 39 151 -57 787 200 29 0 chr4 194307440 194307610 -8020737 + L1M4 LINE L1 4938 5112 -1034 715 110 66 7 chr4 194307610 194307746 -8020601 + L1MB4 LINE L1 6036 6179 -1 243 200 0 0 chr4 194308060 194308115 -8020232 - L1PB1 LINE L1 -1 6150 6096 2342 74 0 3 chr4 194308115 194308425 -8019922 - AluY SINE Alu -2 309 1 489 133 0 24 chr4 194308433 194308516 -8019831 - AluS SINE Alu -2 307 227 2183 130 0 21 chr4 194308520 194308858 -8019489 + Harlequin LTR ERV1 661 991 -7408 29670 75 6 6 chr4 194308865 194312649 -8015698 + Harlequin LTR ERV1 1164 4944 -3455 768 177 33 43 chr4 194312650 194312955 -8015392 + Harlequin LTR ERV1 840 1141 -5755 * 9648 115 17 13 chr4 194312951 194315122 -8013225 + pTR5 LTR ERV1 504 8399 0 343 260 10 0 chr4 194315122 194315218 -8013129 + LTR30 LTR ERV1 546 642 -80 1521 98 5 9 chr4 194315221 194315445 -8012902 + pTR5 LTR ERV1 172 394 -2044 2404 158 38 16 chr4 194315572 194316015 -8012332 - MLT2C2 LTR ERVL -11 453 1 352 233 35 12 chr4 194316018 194316104 -8012243 - MLT1K LTR MaLR -373 215 128 198 347 99 8 chr4 194316145 194316266 -8012081 - MIR3 SINE MIR -76 132 1 3828 142 67 28 chr4 194316899 194317438 -8010909 + MER50 LTR ERV1 3 576 -158 2787 6 0 0 chr4 194317438 194317749 -8010598 - AluY SINE Alu 0 311 1 3828 142 67 28 chr4 194317749 194317898 -8010449 + MER50 LTR ERV1 576 718 -16 1638 149 29 0 chr4 194318305 194318580 -8009767 - AluJo SINE Alu -29 283 1 393 309 143 22 chr4 194320160 194320383 -8007964 - L2 LINE L2 -208 3064 2815 338 275 132 0 chr4 194320396 194320487 -8007860 + MER5A DNA MER1_type 7 109 -80 1692 148 38 3 chr4 194320507 194320798 -8007549 + AluJb SINE Alu 1 301 -11 461 333 69 16 chr4 194320877 194321123 -8007224 - L2 LINE L2 -556 2758 2500 337 282 39 19 chr4 194322498 194322601 -8005746 + MIR SINE MIR 47 151 -111 2256 91 0 0 chr4 194322638 194322946 -8005401 + AluSg SINE Alu 1 308 -2 416 299 164 53 chr4 194322961 194323436 -8004911 + L2 LINE L2 1425 1952 -1362 788 112 0 17 chr4 194323453 194323569 -8004778 - FLAM_C SINE Alu -28 115 2 1004 307 142 20 chr4 194323625 194324790 -8003557 + L2 LINE L2 1991 3303 -10 193 300 90 30 chr4 194324796 194324896 -8003451 + MIR SINE MIR 157 262 0 1760 161 3 0 chr4 194324992 194325283 -8003064 - AluJo SINE Alu -18 294 3 316 324 151 0 chr4 194325524 194325703 -8002644 + MIR SINE MIR 6 211 -51 5025 158 20 16 chr4 194326218 194327143 -8001204 + L1MB3 LINE L1 5254 6182 -1 2232 90 0 0 chr4 194327374 194327664 -8000683 + AluSp SINE Alu 2 291 -22 611 110 0 0 chr4 194327677 194327768 -8000579 - FLAM_A SINE Alu -51 91 1 2014 119 0 13 chr4 194328803 194329105 -7999242 - AluSx SINE Alu -14 298 1 420 118 15 0 chr4 194329179 194329247 -7999100 + L1MA8 LINE L1 6023 6091 -200 276 350 25 12 chr4 194329285 194329366 -7998981 + MIR3 SINE MIR 38 117 -91 1953 142 0 3 chr4 194329366 194329668 -7998679 - AluJb SINE Alu -11 301 1 276 350 25 12 chr4 194329668 194329749 -7998598 + MIR3 SINE MIR 117 202 -6 360 326 169 35 chr4 194329803 194330116 -7998231 + L2 LINE L2 2918 3272 0 240 179 18 54 chr4 194330147 194330203 -7998144 + L3 LINE CR1 1503 1556 -21 1658 175 60 86 chr4 194331213 194331692 -7996655 - MLT1C LTR MaLR 0 467 1 2235 101 0 7 chr4 194331822 194332109 -7996238 + AluSp SINE Alu 1 320 0 295 29 0 0 chr4 194332109 194332144 -7996203 + (CAAA)n Simple_repeat Simple_repeat 2 176 0 1252 271 39 34 chr4 194332253 194332833 -7995514 - L2 LINE L2 -4 3309 2725 273 130 22 0 chr4 194332835 194332881 -7995466 + MSTB2 LTR MaLR 1 47 -410 1749 90 0 5 chr4 194332982 194333204 -7995143 + AluSg/x SINE Alu 67 287 -25 1124 220 331 5 chr4 194333702 194334143 -7994204 - MLT1G1 LTR MaLR 0 595 11 29 0 0 0 chr4 194334188 194334217 -7994130 + AT_rich Low_complexity Low_complexity 1 29 0 2460 231 43 16 chr4 194334315 194334890 -7993457 + MER69 DNA AcHobo 2 592 -634 371 150 0 38 chr4 194334894 194334974 -7993373 + L1MC4a LINE L1 6107 6183 -1625 * 1067 217 32 7 chr4 194334963 194335244 -7993103 + L1M4 LINE L1 4272 4559 -1587 378 342 36 10 chr4 194335364 194335560 -7992787 + MIR SINE MIR 11 211 -51 364 257 151 10 chr4 194335980 194336186 -7992161 - L3 LINE CR1 -572 1005 771 333 0 0 0 chr4 194338331 194338368 -7989979 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 211 238 0 0 chr4 194338442 194338484 -7989863 + (TAG)n Simple_repeat Simple_repeat 3 44 0 262 307 153 19 chr4 194338495 194338710 -7989637 - MIR SINE MIR -12 250 7 2750 33 0 0 chr4 194339226 194339532 -7988815 - AluY SINE Alu -5 306 1 420 254 105 0 chr4 194340888 194341002 -7987345 - MLT1J1 LTR MaLR -314 132 7 2426 80 0 19 chr4 194341044 194341356 -7986991 + AluSx SINE Alu 1 306 -6 2313 108 0 13 chr4 194341951 194342267 -7986080 + AluSx SINE Alu 1 312 0 2452 83 0 0 chr4 194342530 194342830 -7985517 - AluSg1 SINE Alu -9 300 1 334 320 126 24 chr4 194344545 194344751 -7983596 - MIR SINE MIR -2 260 34 339 193 35 61 chr4 194346170 194346284 -7982063 + L2 LINE L2 3162 3272 0 1873 170 24 11 chr4 194346392 194346768 -7981579 - L1MB4 LINE L1 0 6180 5800 352 89 0 0 chr4 194346768 194346813 -7981534 + AluSx SINE Alu 1 45 -256 1796 126 0 8 chr4 194346890 194347151 -7981196 + AluSx SINE Alu 47 305 -7 282 195 11 81 chr4 194347151 194347238 -7981109 - L1MB4 LINE L1 -363 5811 5731 630 292 79 52 chr4 194347238 194347376 -7980971 - L1ME4a LINE L1 -214 5907 5774 225 0 0 0 chr4 194347376 194347401 -7980946 + (TG)n Simple_repeat Simple_repeat 1 25 0 630 292 79 52 chr4 194347401 194347742 -7980605 - L1ME4a LINE L1 -347 5774 5415 975 268 76 70 chr4 194347787 194347855 -7980492 - L1ME4a LINE L1 -1476 4670 4604 2362 110 0 0 chr4 194347855 194348165 -7980182 - AluSx SINE Alu -2 310 1 975 268 76 70 chr4 194348165 194348512 -7979835 - L1ME4a LINE L1 -1542 4604 4260 1667 144 56 39 chr4 194348512 194348817 -7979530 - AluJo SINE Alu 0 312 3 975 268 76 70 chr4 194348817 194349313 -7979034 - L1ME4a LINE L1 -1886 4260 3753 21 0 0 0 chr4 194349428 194349449 -7978898 + AT_rich Low_complexity Low_complexity 1 21 0 764 144 12 75 chr4 194349592 194349752 -7978595 + MER21A LTR ERV1 13 162 -769 1967 160 0 0 chr4 194350807 194351100 -7977247 + AluSx SINE Alu 12 304 -8 603 227 141 46 chr4 194351794 194352326 -7976021 + LTR50 LTR ERVL 14 680 -115 2306 182 79 7 chr4 194352330 194352786 -7975561 + MLT1D LTR MaLR 12 500 -5 309 178 123 0 chr4 194352796 194352869 -7975478 + LTR50 LTR ERVL 710 791 -4 1686 159 24 17 chr4 194352903 194353192 -7975155 - AluJo SINE Alu -21 291 1 2137 112 4 0 chr4 194353309 194353607 -7974740 - AluSq SINE Alu 0 302 4 1770 152 36 24 chr4 194354185 194354515 -7973832 - MER44D DNA MER2_type -5 604 1 878 265 62 47 chr4 194354974 194355295 -7973052 - LTR40b LTR ERVL 0 462 137 2153 169 73 65 chr4 194355591 194356049 -7972298 + MLT2B1 LTR ERVL 1 462 -53 854 16 16 32 chr4 194356049 194356175 -7972172 + (TCTA)n Simple_repeat Simple_repeat 3 126 0 2153 169 73 65 chr4 194356175 194356230 -7972117 + MLT2B1 LTR ERVL 462 515 0 263 355 101 30 chr4 194356734 194356903 -7971444 + L2 LINE L2 3092 3272 0 635 144 68 113 chr4 194359476 194359608 -7968739 + L1MC5 LINE L1 7717 7837 -124 1926 111 48 35 chr4 194359608 194359897 -7968450 + AluSg1 SINE Alu 1 293 -16 635 144 68 113 chr4 194359897 194359986 -7968361 + L1MC5 LINE L1 7837 7928 -33 1725 154 46 14 chr4 194359986 194360266 -7968081 - AluJo SINE Alu -23 289 1 247 161 16 16 chr4 194360298 194360360 -7967987 + GA-rich Low_complexity Low_complexity 2 63 0 201 363 0 11 chr4 194360506 194360597 -7967750 - MER5A DNA MER1_type -93 96 7 1826 89 4 37 chr4 194361120 194361389 -7966958 + AluSx SINE Alu 40 299 -13 905 266 122 35 chr4 194361418 194361851 -7966496 + L1MC4a LINE L1 5523 5993 -1815 314 280 14 77 chr4 194361876 194361939 -7966408 + MER94 DNA DNA 1 66 -68 2297 104 0 3 chr4 194361939 194362236 -7966111 - AluSx SINE Alu -16 296 1 314 280 14 77 chr4 194362236 194362315 -7966032 + MER94 DNA DNA 66 134 0 269 314 51 22 chr4 194362693 194362830 -7965517 - L2 LINE L2 -45 3227 3087 200 108 0 27 chr4 194362881 194362918 -7965429 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2148 104 30 0 chr4 194363374 194363671 -7964676 + AluSx SINE Alu 1 306 -6 2104 133 0 13 chr4 194364014 194364330 -7964017 - AluSx SINE Alu 0 312 1 372 243 45 18 chr4 194365874 194365985 -7962362 + MIR SINE MIR 37 150 -58 781 234 104 0 chr4 194367434 194367635 -7960712 + MER58A DNA MER1_type 1 222 -2 390 221 54 74 chr4 194367665 194367814 -7960533 - MER5B DNA MER1_type -32 146 1 25 0 0 0 chr4 194368013 194368038 -7960309 + GC_rich Low_complexity Low_complexity 1 25 0 2543 157 35 47 chr4 194368268 194368808 -7959539 + MER6A DNA MER2_type -1 605 0 369 0 0 0 chr4 194368835 194368876 -7959471 + (CA)n Simple_repeat Simple_repeat 1 41 0 2407 99 0 0 chr4 194369105 194369408 -7958939 - AluSg SINE Alu -7 303 1 191 263 145 0 chr4 194369677 194369753 -7958594 - L2 LINE L2 -26 3287 3201 2310 95 7 3 chr4 194369998 194370294 -7958053 + AluSp SINE Alu 1 297 -16 811 183 0 0 chr4 194370304 194370435 -7957912 + FLAM_C SINE Alu 3 133 0 379 292 71 7 chr4 194370684 194370838 -7957509 + MER103 DNA DNA 2 165 -1 934 141 7 0 chr4 194371186 194371335 -7957012 - L1MA8 LINE L1 -63 6228 6079 236 185 0 0 chr4 194371389 194371443 -7956904 + L1MA8 LINE L1 6238 6291 0 245 209 104 0 chr4 194372739 194372806 -7955541 - L1ME4a LINE L1 -107 6014 5941 201 225 99 0 chr4 194373071 194373142 -7955205 + MIR SINE MIR 99 176 -86 570 152 248 0 chr4 194373838 194373983 -7954364 + MER5A DNA MER1_type 7 187 -2 1708 165 7 17 chr4 194374855 194375152 -7953195 - AluJo SINE Alu -18 294 1 298 236 22 11 chr4 194376033 194376122 -7952225 + GA-rich Low_complexity Low_complexity 2 91 0 1436 141 44 8 chr4 194376278 194376527 -7951820 + MER2 DNA MER2_type 40 297 -48 3397 75 30 2 chr4 194378361 194378802 -7949545 + MLT2A2 LTR ERVL 1 453 0 1894 139 23 23 chr4 194381666 194381968 -7946379 + AluJo SINE Alu 1 302 -10 262 261 36 36 chr4 194382263 194382374 -7945973 - MIR SINE MIR -67 195 85 1730 177 3 10 chr4 194382955 194383254 -7945093 - AluJo SINE Alu -15 297 1 336 333 14 14 chr4 194385047 194385188 -7943159 + L2 LINE L2 3167 3307 -6 516 250 79 52 chr4 194386366 194386397 -7941950 + MIR SINE MIR 3 32 -230 2098 118 3 3 chr4 194386397 194386702 -7941645 + AluSq SINE Alu 1 305 -8 516 250 79 52 chr4 194386702 194386922 -7941425 + MIR SINE MIR 32 261 -1 1679 58 5 59 chr4 194387017 194387300 -7941047 + L1P LINE L1 5152 5423 -731 32 26 0 0 chr4 194387354 194387393 -7940954 + AT_rich Low_complexity Low_complexity 1 39 0 213 65 0 0 chr4 194387491 194387522 -7940825 + (CA)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr4 194388194 194388215 -7940132 + GC_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 194388253 194388281 -7940066 + GC_rich Low_complexity Low_complexity 1 28 0 349 299 68 0 chr4 194388870 194388987 -7939360 - L2 LINE L2 -25 3288 3164 249 83 0 0 chr4 194391027 194391063 -7937284 + (CA)n Simple_repeat Simple_repeat 2 37 0 2462 58 0 13 chr4 194392313 194392625 -7935722 + AluY SINE Alu 1 308 -3 1943 117 0 0 chr4 194393052 194393318 -7935029 - AluSg SINE Alu -44 266 1 326 352 28 28 chr4 194393396 194393572 -7934775 + L2 LINE L2 2917 3092 -180 207 204 0 0 chr4 194393574 194393623 -7934724 + (TCCA)n Simple_repeat Simple_repeat 3 51 0 2162 121 3 0 chr4 194394086 194394393 -7933954 - AluSx SINE Alu -4 308 1 321 204 45 57 chr4 194394816 194394904 -7933443 + L2 LINE L2 3186 3272 0 320 306 32 24 chr4 194495469 194495593 -7832754 - MIR SINE MIR -109 153 29 211 212 30 30 chr4 194495658 194495724 -7832623 - MIR SINE MIR -14 248 183 359 338 6 45 chr4 194495842 194495999 -7832348 + MIR3 SINE MIR 30 180 -28 441 0 0 0 chr4 194496329 194496378 -7831969 + (TA)n Simple_repeat Simple_repeat 2 50 0 207 213 43 0 chr4 194496761 194496808 -7831539 - L2 LINE L2 -3 3310 3262 258 317 30 49 chr4 194496977 194497141 -7831206 - L2 LINE L2 -236 3036 2876 192 305 34 0 chr4 194497182 194497241 -7831106 - L2 LINE L2 -623 2691 2631 213 278 0 0 chr4 194497386 194497440 -7830907 + L2 LINE L2 3206 3259 -13 928 134 0 0 chr4 194497576 194497703 -7830644 + FLAM_C SINE Alu 1 127 -6 333 0 0 0 chr4 194497709 194497746 -7830601 + (TG)n Simple_repeat Simple_repeat 2 38 0 1986 114 0 0 chr4 194497964 194498219 -7830128 + AluSq SINE Alu 1 255 -58 19320 59 1 0 chr4 194498321 194500653 -7827694 - HERVK9 LTR ERVK -2556 3360 1027 18463 68 3 4 chr4 194500755 194503059 -7825288 + HERVK9 LTR ERVK 3422 5723 -193 902 233 9 0 chr4 194503173 194503388 -7824959 + AluSg/x SINE Alu 91 307 -3 988 147 87 42 chr4 194503392 194503686 -7824661 - MER4B LTR ERV1 -258 352 1 1951 182 75 0 chr4 194503714 194504076 -7824271 + MLT1B LTR MaLR 1 389 -1 411 305 66 23 chr4 194504261 194504654 -7823693 + L1M4 LINE L1 4023 4432 -1714 3624 156 37 15 chr4 194504787 194505009 -7823338 + L1MB2 LINE L1 5444 5660 -511 2462 68 0 13 chr4 194505009 194505320 -7823027 + AluY SINE Alu 1 307 -4 3624 156 37 15 chr4 194505320 194505770 -7822577 + L1MB2 LINE L1 5660 6131 -40 2255 125 0 0 chr4 194505770 194506065 -7822282 + AluSx SINE Alu 1 295 -17 654 183 17 0 chr4 194506083 194506198 -7822149 + FLAM_C SINE Alu 1 117 -26 489 41 27 0 chr4 194509802 194509875 -7818472 - AluY SINE Alu 0 309 235 866 121 24 0 chr4 194509976 194510100 -7818247 + MSTA LTR MaLR 300 426 -2 1584 157 20 24 chr4 194510111 194510405 -7817942 - MLT1B LTR MaLR 0 390 98 920 138 0 8 chr4 194510412 194510542 -7817805 - FLAM_C SINE Alu -14 129 1 744 135 0 0 chr4 194510542 194510646 -7817701 - MLT1B LTR MaLR -281 109 6 543 130 0 22 chr4 194510693 194510785 -7817562 + MER65A LTR ERV1 1 90 -355 348 188 0 0 chr4 194510789 194510853 -7817494 + FLAM SINE Alu 69 132 -1 1885 145 14 3 chr4 194511386 194511669 -7816678 - AluSx SINE Alu -26 286 1 324 0 0 0 chr4 194511979 194512015 -7816332 + (CA)n Simple_repeat Simple_repeat 2 37 0 481 255 80 28 chr4 194512082 194512333 -7816014 + L1ME4a LINE L1 5652 5915 -206 371 263 85 62 chr4 194512738 194512962 -7815385 - L1M4 LINE L1 -2936 3210 2982 2144 99 7 20 chr4 194513045 194513337 -7815010 + AluSx SINE Alu 1 288 -24 485 198 63 20 chr4 194513351 194513547 -7814800 - L1MC5 LINE L1 -23 7938 7698 373 327 72 10 chr4 194513797 194514005 -7814342 - L1M4 LINE L1 -3632 2514 2294 1128 235 60 102 chr4 194514074 194514605 -7813742 - LTR67 LTR ERVL -1 556 48 551 211 55 0 chr4 194514912 194515040 -7813307 - AluJo SINE Alu -176 136 2 2109 131 0 0 chr4 194515164 194515455 -7812892 - AluSx SINE Alu -21 291 1 594 116 42 0 chr4 194515626 194515721 -7812626 + AluSg/x SINE Alu 184 282 -28 802 153 0 0 chr4 194515744 194515862 -7812485 + FLAM_C SINE Alu 1 118 -15 22 35 0 0 chr4 194515862 194515891 -7812456 + AT_rich Low_complexity Low_complexity 1 29 0 354 247 116 53 chr4 194516014 194516204 -7812143 - L1ME3A LINE L1 -7 6163 5962 395 301 59 25 chr4 194516299 194516535 -7811812 - L1MC5 LINE L1 -430 7531 7288 212 330 187 0 chr4 194517311 194517514 -7810833 + L2 LINE L2 2462 2702 -612 392 209 110 0 chr4 194517858 194517949 -7810398 - L1MB3 LINE L1 -3 6180 6080 2612 143 17 48 chr4 194517949 194518425 -7809922 + LOR1b LTR ERV1 1 461 0 2628 136 17 32 chr4 194518425 194518615 -7809732 - L1MB3 LINE L1 -100 6083 5892 1946 170 10 0 chr4 194518615 194518915 -7809432 + AluSx SINE Alu 3 305 -7 2628 136 17 32 chr4 194518915 194519187 -7809160 - L1MB3 LINE L1 -291 5892 5628 1247 141 30 0 chr4 194519289 194519488 -7808859 + MER4B LTR ERV1 406 610 0 443 214 21 50 chr4 194519504 194519644 -7808703 + L1M LINE L1 5293 5428 -734 2295 89 3 16 chr4 194519669 194519982 -7808365 + AluSq SINE Alu 1 309 -4 2081 115 10 3 chr4 194519993 194520289 -7808058 + AluSx SINE Alu 1 298 -14 2587 61 0 0 chr4 194520291 194520602 -7807745 + AluY SINE Alu 1 311 0 219 139 0 0 chr4 194520602 194520638 -7807709 + (GA)n Simple_repeat Simple_repeat 1 36 0 789 233 83 12 chr4 194520640 194520893 -7807454 + L1ME LINE L1 5366 5636 -526 2047 97 3 7 chr4 194521665 194521955 -7806392 + AluSq SINE Alu 5 293 -20 258 32 0 0 chr4 194521960 194521991 -7806356 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 316 148 0 0 chr4 194522728 194522782 -7805565 + L1PA16 LINE L1 5803 5856 -310 2285 123 0 0 chr4 194523272 194523581 -7804766 - AluSx SINE Alu -3 309 1 905 176 117 27 chr4 194524051 194524273 -7804074 + Charlie1 DNA MER1_type 1 242 -2519 364 231 91 0 chr4 194524322 194524443 -7803904 + Charlie1 DNA MER1_type 2630 2761 0 438 320 104 38 chr4 194524598 194524914 -7803433 - L2 LINE L2 -7 3265 2929 625 230 148 0 chr4 194524917 194525071 -7803276 - MER112 DNA MER1_type -6 254 64 228 35 0 0 chr4 194525071 194525100 -7803247 + (TG)n Simple_repeat Simple_repeat 2 30 0 625 230 148 0 chr4 194525100 194525141 -7803206 - MER112 DNA MER1_type -196 64 30 720 216 96 124 chr4 194525611 194525693 -7802654 + MLT1J LTR MaLR 97 180 -331 246 32 0 0 chr4 194525693 194525724 -7802623 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 2186 85 4 4 chr4 194525724 194526005 -7802342 - AluSp SINE Alu -32 281 1 720 216 96 124 chr4 194526005 194526348 -7801999 + MLT1J LTR MaLR 178 511 0 2159 117 0 29 chr4 194526423 194526732 -7801615 - AluSp SINE Alu -13 300 1 1904 152 10 17 chr4 194527284 194527586 -7800761 - AluJb SINE Alu -12 300 1 21 0 0 0 chr4 194528467 194528488 -7799859 + AT_rich Low_complexity Low_complexity 1 21 0 2553 44 7 0 chr4 194528498 194528791 -7799556 + AluY SINE Alu 1 295 -16 423 222 216 41 chr4 194529607 194529801 -7798546 + L1ME2 LINE L1 5928 6155 -9 8674 67 0 1 chr4 194530022 194531082 -7797265 - HERVK9 LTR ERVK -4857 1059 1 3239 111 59 12 chr4 194531082 194531570 -7796777 - MER9 LTR ERVK 0 511 1 2146 108 7 0 chr4 194531897 194532216 -7796131 - AluSx SINE Alu 0 312 1 2511 65 0 0 chr4 194533200 194533506 -7794841 - AluY SINE Alu -5 306 1 23 0 0 0 chr4 194534519 194534542 -7793805 + AT_rich Low_complexity Low_complexity 1 23 0 365 224 37 0 chr4 194535103 194535210 -7793137 - L1M4 LINE L1 -946 5200 5090 272 263 40 59 chr4 194535229 194535381 -7792966 + L2 LINE L2 3152 3300 -13 189 121 0 0 chr4 194535521 194535554 -7792793 + (TTAAA)n Simple_repeat Simple_repeat 2 34 0 26 0 0 0 chr4 194535621 194535647 -7792700 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr4 194537334 194537362 -7790985 + AT_rich Low_complexity Low_complexity 1 28 0 293 293 12 0 chr4 194537933 194538015 -7790332 + MIR3 SINE MIR 98 180 -28 1959 125 7 0 chr4 194538036 194538343 -7790004 + AluJb SINE Alu 1 309 0 2186 124 3 0 chr4 194540345 194540644 -7787703 + AluSx SINE Alu 1 300 -12 845 114 0 8 chr4 194540848 194540979 -7787368 - MER9 LTR ERVK 0 511 382 202 240 0 20 chr4 194541421 194541471 -7786876 + A-rich Low_complexity Low_complexity 2 50 0 281 176 0 0 chr4 194542174 194542225 -7786122 + Tigger1 DNA MER2_type 9 59 -2359 789 263 29 12 chr4 194543016 194543256 -7785091 - MIR SINE MIR -9 253 10 613 217 91 20 chr4 194543625 194543823 -7784524 - MIR SINE MIR 0 262 51 395 250 79 36 chr4 194543856 194543996 -7784351 + L2 LINE L2 3162 3307 -6 660 272 92 55 chr4 194544204 194544663 -7783684 + LTR33 LTR ERVL 46 521 0 711 264 61 75 chr4 194544663 194545008 -7783339 - L3 LINE CR1 -38 1539 1200 3962 170 34 13 chr4 194545255 194545921 -7782426 - L1MB4 LINE L1 -3 6177 5494 1793 175 0 7 chr4 194545921 194546230 -7782117 - AluJb SINE Alu -5 307 1 3962 170 34 13 chr4 194546230 194546276 -7782071 - L1MB4 LINE L1 -686 5494 5450 673 181 26 26 chr4 194546292 194546447 -7781900 - L1MA10 LINE L1 0 6334 6180 347 305 57 0 chr4 194546772 194546877 -7781470 - MIR SINE MIR -73 189 79 3128 208 23 35 chr4 194546879 194546966 -7781381 + L1MB7 LINE L1 5101 5188 -996 1820 157 7 7 chr4 194546966 194547260 -7781087 + AluJb SINE Alu 1 294 -18 3128 208 23 35 chr4 194547260 194548162 -7780185 + L1MB7 LINE L1 5188 6171 -13 344 262 27 34 chr4 194549911 194550032 -7778315 - MIR SINE MIR -65 143 38 431 234 288 16 chr4 194552190 194552374 -7775973 + MIR SINE MIR 28 261 -1 245 355 161 5 chr4 194552615 194552801 -7775546 + L2 LINE L2 229 443 -2871 265 284 0 12 chr4 194552901 194552982 -7775365 + MIR SINE MIR 180 259 -3 624 380 19 24 chr4 194553134 194553550 -7774797 + L2 LINE L2 946 1359 -1955 2695 162 11 23 chr4 194553551 194554021 -7774326 + L1PB4 LINE L1 5689 6152 -4 631 114 45 30 chr4 194554060 194554192 -7774155 - L1MA8 LINE L1 0 6291 6158 216 275 88 33 chr4 194554257 194554348 -7773999 - L2 LINE L2 0 3313 3218 310 210 77 99 chr4 194554391 194554572 -7773775 - L2 LINE L2 -96 3217 3041 479 214 57 43 chr4 194554677 194554817 -7773530 - MIR SINE MIR -116 146 5 273 143 41 0 chr4 194557381 194557430 -7770917 - LTR16C LTR ERVL -370 121 71 2178 119 0 6 chr4 194557692 194558004 -7770343 - AluSx SINE Alu -2 310 1 441 0 0 0 chr4 194558595 194558644 -7769703 + (TA)n Simple_repeat Simple_repeat 2 50 0 817 170 0 0 chr4 194558859 194558994 -7769353 + FRAM SINE Alu 36 170 -6 1756 243 37 13 chr4 194559382 194559838 -7768509 - MLT1C LTR MaLR 0 467 1 461 245 275 20 chr4 194559953 194560153 -7768194 - MIR SINE MIR -3 259 9 854 177 69 20 chr4 194560314 194560517 -7767830 + Charlie5 DNA MER1_type 2373 2585 -27 194 303 13 13 chr4 194560600 194560676 -7767671 + MIR SINE MIR 98 173 -89 251 133 0 0 chr4 194560875 194560920 -7767427 - AluSc SINE Alu 0 299 255 22 0 0 0 chr4 194561271 194561293 -7767054 + AT_rich Low_complexity Low_complexity 1 22 0 2291 105 7 0 chr4 194561303 194561598 -7766749 + AluSg SINE Alu 1 297 -13 27 49 0 0 chr4 194561738 194561779 -7766568 + AT_rich Low_complexity Low_complexity 1 41 0 458 268 17 4 chr4 194561788 194561947 -7766400 - L1ME LINE L1 -285 5881 5717 216 0 0 0 chr4 194561962 194561986 -7766361 + (TG)n Simple_repeat Simple_repeat 2 25 0 439 288 126 33 chr4 194564619 194564834 -7763513 + MIR SINE MIR 1 235 -27 2173 127 0 9 chr4 194564891 194565206 -7763141 - AluSx SINE Alu 0 312 1 3016 207 130 9 chr4 194565516 194566380 -7761967 + L1ME1 LINE L1 5146 6119 -47 2227 120 7 0 chr4 194566403 194566711 -7761636 - AluSx SINE Alu -2 310 1 1428 229 50 84 chr4 194566783 194567341 -7761006 + MER77 LTR ERV1 54 592 -13 219 233 0 0 chr4 194567522 194567565 -7760782 + (TG)n Simple_repeat Simple_repeat 2 44 0 2302 89 3 13 chr4 194567704 194568006 -7760341 + AluSq SINE Alu 1 299 -14 233 221 29 73 chr4 194568387 194568455 -7759892 - L2 LINE L2 -9 3263 3199 703 147 54 0 chr4 194568456 194568585 -7759762 - MER20 DNA MER1_type -83 136 1 616 256 35 74 chr4 194568585 194568814 -7759533 + Charlie2 DNA MER1_type 78 297 -2485 1702 202 129 9 chr4 194568841 194569390 -7758957 + Charlie2 DNA MER1_type 2240 2854 -8 180 0 0 0 chr4 194569437 194569457 -7758890 + (A)n Simple_repeat Simple_repeat 1 20 0 658 149 0 0 chr4 194569743 194569837 -7758510 - AluJ/FLAM SINE Alu -217 95 2 279 0 0 0 chr4 194570131 194570162 -7758185 + (CA)n Simple_repeat Simple_repeat 2 32 0 406 229 144 0 chr4 194570445 194570598 -7757749 - MER5B DNA MER1_type -3 175 1 404 286 87 6 chr4 194570635 194570796 -7757551 + MIR SINE MIR 59 232 -30 238 339 41 16 chr4 194571177 194571298 -7757049 - L2 LINE L2 -1 3271 3148 216 219 24 0 chr4 194571555 194571596 -7756751 - L2 LINE L2 -246 3067 3026 1946 164 28 14 chr4 194571979 194572339 -7756008 - MLT2D LTR ERVL -48 366 2 241 307 23 23 chr4 194572403 194572491 -7755856 + CT-rich Low_complexity Low_complexity 2 89 0 322 281 83 0 chr4 194573069 194573190 -7755157 - L2 LINE L2 -9 3263 3133 3497 104 27 47 chr4 194573599 194573955 -7754392 - L1MA3 LINE L1 0 6305 5944 2339 88 0 0 chr4 194573955 194574251 -7754096 - AluSx SINE Alu -12 300 5 3497 104 27 47 chr4 194574251 194574422 -7753925 - L1MA3 LINE L1 -361 5944 5787 2292 102 10 0 chr4 194574422 194574725 -7753622 - AluSx SINE Alu -6 306 1 3497 104 27 47 chr4 194574725 194574754 -7753593 - L1MA3 LINE L1 -518 5787 5759 242 243 57 150 chr4 194575012 194575152 -7753195 - MER5A DNA MER1_type -18 171 45 362 313 86 18 chr4 194575418 194575581 -7752766 + MIR SINE MIR 20 193 -69 2171 93 7 0 chr4 194575764 194576043 -7752304 - AluSx SINE Alu -31 281 1 183 129 0 0 chr4 194576207 194576238 -7752109 + (TTCCC)n Simple_repeat Simple_repeat 2 32 0 1663 169 14 7 chr4 194576335 194576664 -7751683 - AluJo SINE Alu 0 331 1 910 251 77 49 chr4 194577343 194577769 -7750578 + MLT1C LTR MaLR 21 466 -1 190 309 229 15 chr4 194577774 194577975 -7750372 + L2 LINE L2 3004 3247 -25 251 358 160 0 chr4 194578020 194578207 -7750140 - MIR SINE MIR -36 226 10 282 116 0 0 chr4 194578316 194578359 -7749988 + (TG)n Simple_repeat Simple_repeat 2 44 0 238 243 57 0 chr4 194578475 194578545 -7749802 + GA-rich Low_complexity Low_complexity 6 79 0 734 211 68 55 chr4 194578697 194578934 -7749413 + MLT1D LTR MaLR 7 246 -259 289 288 83 6 chr4 194578982 194579154 -7749193 + MLT1C LTR MaLR 373 462 -5 1418 157 64 30 chr4 194580313 194580580 -7747767 - AluJo SINE Alu -17 295 20 2435 90 0 0 chr4 194580789 194581101 -7747246 - AluSx SINE Alu 0 312 1 1765 141 3 20 chr4 194581103 194581169 -7747178 + LTR51 LTR ERV1 380 446 -225 4047 94 0 4 chr4 194581169 194581682 -7746665 - MER9 LTR ERVK 0 511 1 1765 141 3 20 chr4 194581682 194581912 -7746435 + LTR51 LTR ERV1 446 671 0 865 236 0 0 chr4 194582112 194582277 -7746070 + FRAM SINE Alu 1 165 -1 250 216 284 29 chr4 194582664 194582766 -7745581 - MIR SINE MIR -71 191 64 309 26 0 0 chr4 194583108 194583146 -7745201 + (CA)n Simple_repeat Simple_repeat 2 39 0 267 248 85 78 chr4 194583834 194583987 -7744360 + MIR SINE MIR 57 210 -52 292 203 27 0 chr4 194584146 194584220 -7744127 - MIR SINE MIR -98 164 89 380 201 0 0 chr4 194584590 194584660 -7743687 - MIR SINE MIR -52 156 86 529 275 50 86 chr4 194584686 194584807 -7743540 + L1ME4a LINE L1 5518 5642 -479 183 42 0 0 chr4 194584807 194584831 -7743516 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2168 102 0 3 chr4 194584833 194585117 -7743230 - AluSc SINE Alu -26 283 1 529 275 50 86 chr4 194585117 194585435 -7742912 + L1ME4a LINE L1 5643 5944 -177 1780 142 17 13 chr4 194585435 194585737 -7742610 - MSTA LTR MaLR -125 303 1 2126 114 3 41 chr4 194585954 194586271 -7742076 - AluSx SINE Alu -7 305 1 1975 218 45 20 chr4 194586768 194587214 -7741133 - MER65C LTR ERV1 -4 457 1 1862 127 3 80 chr4 194587380 194587718 -7740629 + AluSx SINE Alu 1 312 0 2206 119 0 0 chr4 194588554 194588864 -7739483 + AluSx SINE Alu 1 310 -2 198 191 0 0 chr4 194589157 194589204 -7739143 + (TA)n Simple_repeat Simple_repeat 1 47 0 488 205 41 25 chr4 194589241 194589363 -7738984 + MER117 DNA MER1_type 73 196 -1 216 0 0 0 chr4 194590182 194590206 -7738141 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 286 228 73 8 chr4 194590388 194590511 -7737836 - L1ME4a LINE L1 -3 6118 5988 23 33 0 0 chr4 194590515 194590545 -7737802 + AT_rich Low_complexity Low_complexity 1 30 0 1605 223 142 15 chr4 194590920 194591429 -7736918 - MLT1F1 LTR MaLR 0 567 1 2531 45 0 0 chr4 194591580 194591891 -7736456 - AluY SINE Alu 0 311 1 845 241 111 31 chr4 194591909 194592199 -7736148 - MSTD LTR MaLR -51 345 21 705 252 171 14 chr4 194592217 194592439 -7735908 - MIR SINE MIR -1 261 5 441 302 66 23 chr4 194592511 194592816 -7735531 - L1ME4a LINE L1 -224 5940 5623 1215 139 101 5 chr4 194592898 194593107 -7735240 + MSTA LTR MaLR 1 229 -199 21 36 0 0 chr4 194593211 194593239 -7735108 + AT_rich Low_complexity Low_complexity 1 28 0 1978 130 0 0 chr4 194593239 194593524 -7734823 - AluSx SINE Alu -27 285 1 2048 105 17 3 chr4 194593526 194593820 -7734527 - AluSx SINE Alu -14 298 1 227 272 12 12 chr4 194593825 194593906 -7734441 + L1ME LINE L1 2453 2533 -3613 1492 139 23 50 chr4 194594233 194594534 -7733813 - AluJb SINE Alu -19 293 1 180 0 0 0 chr4 194594604 194594624 -7733723 + (CA)n Simple_repeat Simple_repeat 1 20 0 2339 54 3 3 chr4 194595463 194595761 -7732586 - AluSp SINE Alu -15 298 1 841 204 0 61 chr4 194596790 194597021 -7731326 + AluJo SINE Alu 87 303 -9 25 31 0 0 chr4 194597741 194597773 -7730574 + AT_rich Low_complexity Low_complexity 1 32 0 330 309 39 77 chr4 194597902 194598109 -7730238 + L1ME LINE L1 4783 4981 -1165 337 235 130 19 chr4 194598547 194598709 -7729638 + L1ME LINE L1 5488 5667 -454 342 0 0 0 chr4 194598754 194598792 -7729555 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 1568 153 80 0 chr4 194598794 194599082 -7729265 - AluSx SINE Alu -1 311 1 317 339 80 9 chr4 194599276 194599388 -7728959 + L2 LINE L2 3148 3267 -5 21 36 0 0 chr4 194599638 194599666 -7728681 + AT_rich Low_complexity Low_complexity 1 28 0 228 153 82 12 chr4 194601034 194601119 -7727228 + (CGCGG)n Simple_repeat Simple_repeat 1 91 0 230 0 33 0 chr4 194601147 194601177 -7727170 + (CCCG)n Simple_repeat Simple_repeat 4 34 0 230 325 138 8 chr4 194601439 194601562 -7726785 - MIR SINE MIR -25 237 99 421 162 14 0 chr4 194603886 194603960 -7724387 - MER116 DNA Mariner -1 79 5 1881 137 3 10 chr4 194605344 194605651 -7722696 + AluSx SINE Alu 1 305 -7 1839 172 39 11 chr4 194605656 194606011 -7722336 - MLT1A1 LTR MaLR 0 365 1 328 238 55 24 chr4 194608079 194608199 -7720148 + HAL1b LINE L1 1195 1311 -37 1402 183 12 8 chr4 194608224 194608475 -7719872 + AluJo SINE Alu 1 252 -60 360 284 126 28 chr4 194608694 194608909 -7719438 + MIR SINE MIR 9 244 -18 287 105 0 0 chr4 194609117 194609155 -7719192 + Alu SINE Alu 1 38 -264 614 224 0 0 chr4 194609189 194609305 -7719042 - FLAM_A SINE Alu -21 121 6 1987 120 0 41 chr4 194609554 194609871 -7718476 - AluSx SINE Alu -8 304 1 498 272 127 22 chr4 194609883 194610111 -7718236 - MIR SINE MIR -2 260 9 489 357 88 23 chr4 194610463 194610805 -7717542 - L2 LINE L2 -409 2905 2542 2254 101 0 0 chr4 194612257 194612565 -7715782 - AluSx SINE Alu -4 308 1 22 56 0 0 chr4 194612771 194612807 -7715540 + AT_rich Low_complexity Low_complexity 1 36 0 6403 78 6 3 chr4 194613112 194614443 -7713904 - L1PA8A LINE L1 -18 6113 4772 2231 84 0 19 chr4 194614881 194615191 -7713156 + AluY SINE Alu 1 304 -7 978 298 13 0 chr4 194616243 194616481 -7711866 - MIR SINE MIR -1 261 21 491 101 13 0 chr4 194617713 194617792 -7710555 + (GA)n Simple_repeat Simple_repeat 1 80 0 22 0 0 0 chr4 194618057 194618079 -7710268 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr4 194618484 194618514 -7709833 + (T)n Simple_repeat Simple_repeat 1 30 0 585 301 19 19 chr4 194624954 194625163 -7703184 + MIR SINE MIR 8 216 -46 416 223 11 11 chr4 194627184 194627278 -7701069 + MER5A DNA MER1_type 13 106 -83 1445 181 48 7 chr4 194627620 194627913 -7700434 - AluJo SINE Alu -7 305 1 1340 117 0 0 chr4 194628040 194628228 -7700119 - AluSq SINE Alu -20 293 106 518 27 267 0 chr4 194628468 194628543 -7699804 + HY3 scRNA scRNA 4 98 -3 194 274 14 27 chr4 194628562 194628635 -7699712 + L2 LINE L2 2991 3062 -210 2176 95 0 10 chr4 194628704 194628999 -7699348 - AluSg SINE Alu -15 295 4 1317 174 57 75 chr4 194629233 194629286 -7699061 - L1MB2 LINE L1 0 6171 6119 1700 127 64 3 chr4 194629286 194629569 -7698778 + AluSx SINE Alu 7 306 -6 1317 174 57 75 chr4 194629569 194629679 -7698668 - L1MB2 LINE L1 -52 6119 6009 5061 138 21 54 chr4 194629679 194630137 -7698210 + MER4D LTR ERV1 1 415 -488 2035 138 0 0 chr4 194630137 194630441 -7697906 - AluSx SINE Alu -8 304 1 5061 138 21 54 chr4 194630441 194630915 -7697432 + MER4D LTR ERV1 415 903 0 1317 174 57 75 chr4 194630915 194631084 -7697263 - L1MB2 LINE L1 -162 6009 5844 5109 132 63 9 chr4 194631221 194632060 -7696287 + MER4D LTR ERV1 1 884 -19 2293 87 0 0 chr4 194632065 194632365 -7695982 - AluSq SINE Alu -13 300 1 366 238 113 40 chr4 194633060 194633211 -7695136 - MIR3 SINE MIR -23 185 24 1016 174 0 0 chr4 194634015 194634176 -7694171 + FRAM SINE Alu 1 161 -5 709 247 0 20 chr4 194635018 194635168 -7693179 - MIR3 SINE MIR -48 160 14 1765 116 0 4 chr4 194635301 194635551 -7692796 - AluSx SINE Alu -58 254 6 535 304 184 35 chr4 194635585 194636005 -7692342 + L2 LINE L2 1817 2173 -1141 1637 153 10 42 chr4 194636005 194636318 -7692029 - AluJo SINE Alu -9 303 1 535 304 184 35 chr4 194636318 194636636 -7691711 + L2 LINE L2 2173 2665 -649 1269 133 0 23 chr4 194636679 194636897 -7691450 - AluJo SINE Alu -15 297 85 1090 53 8 0 chr4 194636899 194637032 -7691315 - AluSq/x SINE Alu -178 134 1 314 388 75 4 chr4 194637113 194637368 -7690979 + L2 LINE L2 2827 3099 -173 690 243 124 14 chr4 194637947 194638157 -7690190 - MIR SINE MIR -2 260 28 23 0 0 0 chr4 194638683 194638706 -7689641 + AT_rich Low_complexity Low_complexity 1 23 0 1817 71 75 0 chr4 194638709 194638989 -7689358 + AluY SINE Alu 12 310 0 757 249 78 81 chr4 194640036 194640482 -7687865 - MLT1L LTR MaLR 0 615 171 325 233 0 0 chr4 194641072 194641132 -7687215 - Charlie8 DNA MER1_type -992 1425 1366 403 306 161 17 chr4 194641144 194641497 -7686850 - Charlie8 DNA MER1_type -1935 482 79 181 369 16 25 chr4 194641773 194641895 -7686452 - L2 LINE L2 0 3313 3193 351 0 0 0 chr4 194641967 194642006 -7686341 + (CA)n Simple_repeat Simple_repeat 1 39 0 880 157 38 49 chr4 194692739 194692924 -7635423 - MER63B DNA MER1_type -248 188 6 2107 145 0 0 chr4 194693034 194693331 -7635016 + AluSg SINE Alu 3 299 -11 616 100 0 11 chr4 194693676 194693766 -7634581 - FLAM_A SINE Alu -18 124 36 281 233 27 14 chr4 194693968 194694041 -7634306 - MER117 DNA MER1_type -123 74 1 1778 142 8 8 chr4 194694406 194694673 -7633674 - AluJo SINE Alu -39 273 7 354 323 15 0 chr4 194695058 194695191 -7633156 - MLT1L LTR MaLR -339 276 142 3742 126 65 28 chr4 194696395 194696473 -7631874 + Tigger1 DNA MER2_type 1089 1163 -1255 1859 141 10 3 chr4 194696473 194696770 -7631577 + AluSx SINE Alu 1 299 -13 1811 146 23 23 chr4 194696771 194697073 -7631274 + AluSx SINE Alu 3 304 -8 3742 126 65 28 chr4 194697073 194697625 -7630722 + Tigger1 DNA MER2_type 1162 1744 -674 1192 164 68 49 chr4 194697625 194697740 -7630607 + AluJb SINE Alu 30 141 -171 2048 129 7 10 chr4 194697740 194698035 -7630312 + AluSx SINE Alu 1 294 -18 1192 164 68 49 chr4 194698035 194698182 -7630165 + AluJb SINE Alu 141 297 -15 3629 189 15 73 chr4 194698183 194698424 -7629923 + Tigger1 DNA MER2_type 1737 1990 -428 2234 113 0 7 chr4 194698424 194698726 -7629621 + AluSx SINE Alu 1 300 -12 3629 189 15 73 chr4 194698726 194699208 -7629139 + Tigger1 DNA MER2_type 1990 2418 0 284 178 209 47 chr4 194699335 194699464 -7628883 + MER34 LTR ERV1 389 538 -4 1816 125 36 0 chr4 194699713 194699993 -7628354 + AluJb SINE Alu 16 305 -7 990 99 13 20 chr4 194700490 194700642 -7627705 + FRAM SINE Alu 17 167 -9 1026 142 21 94 chr4 194701690 194701773 -7626574 + L1MB3 LINE L1 5965 6052 -131 1669 168 39 3 chr4 194701773 194702058 -7626289 - AluJb SINE Alu -16 296 2 1026 142 21 94 chr4 194702058 194702207 -7626140 + L1MB3 LINE L1 6052 6180 -3 844 113 113 0 chr4 194702479 194702621 -7625726 + MER21A LTR ERV1 1 158 -773 282 250 50 0 chr4 194702632 194702712 -7625635 + MER39 LTR ERV1 315 398 -309 * 2809 140 47 35 chr4 194702700 194703208 -7625139 + MER21A LTR ERV1 390 903 -28 262 21 128 0 chr4 194703800 194703847 -7624500 + CT-rich Low_complexity Low_complexity 4 56 0 2725 41 5 41 chr4 194703852 194704221 -7624126 + SVA Other Other 1 356 -1030 204 194 0 0 chr4 194704892 194704928 -7623419 + GA-rich Low_complexity Low_complexity 2 37 0 2489 84 0 0 chr4 194705790 194706099 -7622248 + AluSc SINE Alu 1 309 0 22 35 0 0 chr4 194706776 194706805 -7621542 + AT_rich Low_complexity Low_complexity 1 29 0 2646 46 0 0 chr4 194706970 194707275 -7621072 - AluY SINE Alu -2 309 5 491 232 105 56 chr4 194707275 194707560 -7620787 + L1MC4 LINE L1 6770 7068 -974 1958 146 3 13 chr4 194707605 194707914 -7620433 + AluSg SINE Alu 1 306 -4 693 113 0 0 chr4 194708029 194708151 -7620196 + AluSg/x SINE Alu 183 304 0 878 238 0 6 chr4 194708230 194708411 -7619936 + MER58A DNA MER1_type 1 180 -44 819 186 12 6 chr4 194708515 194708676 -7619671 - AluJb SINE Alu -4 308 147 542 286 110 9 chr4 194708759 194708986 -7619361 - MIR SINE MIR -12 250 1 1765 163 3 10 chr4 194709816 194710116 -7618231 - AluJb SINE Alu -14 298 1 1147 108 28 0 chr4 194710379 194710555 -7617792 - AluSp SINE Alu -11 302 122 1784 192 159 5 chr4 194710868 194711295 -7617052 + MLT1D LTR MaLR 1 493 -12 2146 113 10 3 chr4 194711493 194711786 -7616561 + AluSx SINE Alu 1 295 -17 2078 122 14 0 chr4 194711866 194712160 -7616187 + AluSx SINE Alu 1 298 -14 2374 153 87 11 chr4 194712182 194712632 -7615715 + L1M3 LINE L1 5327 5810 -370 2103 91 44 7 chr4 194712705 194713001 -7615346 + AluSp SINE Alu 2 308 -5 2347 174 97 25 chr4 194713008 194713525 -7614822 - MLT2B3 LTR ERVL 0 554 1 2276 92 13 7 chr4 194713526 194713832 -7614515 - AluSx SINE Alu -4 308 1 685 282 91 25 chr4 194713940 194714181 -7614166 + MIR SINE MIR 6 262 0 21 36 0 0 chr4 194714196 194714224 -7614123 + AT_rich Low_complexity Low_complexity 1 28 0 730 122 0 0 chr4 194714418 194714525 -7613822 - AluSg SINE Alu -7 302 196 * 761 117 0 0 chr4 194714524 194714627 -7613720 - AluSg SINE Alu -204 106 4 2373 92 13 0 chr4 194714762 194715067 -7613280 + AluSg SINE Alu 1 309 -1 216 0 0 0 chr4 194715311 194715335 -7613012 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr4 194716149 194716177 -7612170 + GC_rich Low_complexity Low_complexity 1 28 0 270 192 19 0 chr4 194716563 194716615 -7611732 + MER58A DNA MER1_type 162 214 -10 2166 112 3 7 chr4 194716617 194716913 -7611434 + AluSx SINE Alu 1 295 -17 933 161 0 19 chr4 194716947 194717102 -7611245 - FRAM SINE Alu -14 152 1 215 300 50 38 chr4 194717341 194717421 -7610926 + MIR SINE MIR 13 93 -169 243 274 0 111 chr4 194717421 194717538 -7610809 + L1ME LINE L1 5682 5785 -385 1504 178 42 21 chr4 194717622 194717909 -7610438 + AluJo SINE Alu 6 298 -14 252 118 0 0 chr4 194718330 194718364 -7609983 + tRNA-Gln-CAG tRNA tRNA 5 38 -37 446 263 80 60 chr4 194718490 194718602 -7609745 - MER112 DNA MER1_type 0 256 148 2187 96 28 3 chr4 194718602 194718893 -7609454 + AluSx SINE Alu 1 298 -14 446 263 80 60 chr4 194718893 194719031 -7609316 - MER112 DNA MER1_type -108 148 1 1978 151 3 23 chr4 194719228 194719532 -7608815 + AluSx SINE Alu 1 298 -14 2218 86 0 7 chr4 194719836 194720127 -7608220 - AluSg SINE Alu -14 296 8 2300 123 39 46 chr4 194720190 194720569 -7607778 + Tigger1 DNA MER2_type 470 847 -1571 2073 160 0 0 chr4 194720569 194720881 -7607466 + AluSx SINE Alu 1 312 0 2300 123 39 46 chr4 194720881 194720915 -7607432 + Tigger1 DNA MER2_type 847 880 -1538 2262 101 3 0 chr4 194720916 194721213 -7607134 + AluSq SINE Alu 1 298 -15 1774 164 17 0 chr4 194721515 194721808 -7606539 - AluSx SINE Alu -14 298 1 2064 123 17 3 chr4 194722861 194723154 -7605193 - AluSq SINE Alu -16 297 1 536 295 93 59 chr4 194723329 194723520 -7604827 - L1ME LINE L1 -321 5800 5617 1883 96 11 32 chr4 194723520 194723802 -7604545 + AluSx SINE Alu 1 276 -36 536 295 93 59 chr4 194723802 194724105 -7604242 - L1ME LINE L1 -504 5617 5289 401 352 74 32 chr4 194724108 194724605 -7603742 - L1ME LINE L1 -870 5276 4759 33 0 0 0 chr4 194725400 194725433 -7602914 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr4 194725714 194725735 -7602612 + AT_rich Low_complexity Low_complexity 1 21 0 491 190 0 0 chr4 194725892 194725971 -7602376 + AluJ/FLAM SINE Alu 2 80 -232 370 254 131 8 chr4 194726343 194726473 -7601874 + MER117 DNA MER1_type 13 158 -39 451 320 81 30 chr4 194726613 194726847 -7601500 + MIR SINE MIR 7 252 -10 2406 68 7 23 chr4 194727100 194727407 -7600940 + AluY SINE Alu 1 302 -9 1164 229 4 79 chr4 194727444 194727851 -7600496 + L1MC5 LINE L1 6590 6989 -819 921 150 0 3 chr4 194727855 194728167 -7600180 + (TA)n Simple_repeat Simple_repeat 1 312 0 2197 88 11 3 chr4 194728167 194728450 -7599897 - AluSq SINE Alu -26 287 3 1353 221 74 75 chr4 194728488 194728782 -7599565 + L1MC5 LINE L1 6970 7264 -697 1589 73 100 5 chr4 194728782 194729002 -7599345 - AluY SINE Alu -70 241 1 1353 221 74 75 chr4 194729002 194729263 -7599084 + L1MC5 LINE L1 7264 7524 -437 299 294 109 14 chr4 194729552 194729763 -7598584 - MIR SINE MIR -29 233 3 287 295 160 60 chr4 194730847 194731047 -7597300 - L2 LINE L2 -559 2755 2536 1436 170 3 44 chr4 194731066 194731190 -7597157 + AluJo SINE Alu 18 146 -166 1924 171 0 0 chr4 194731190 194731489 -7596858 + AluJb SINE Alu 1 299 -13 1436 170 3 44 chr4 194731489 194731658 -7596689 + AluJo SINE Alu 146 299 -13 2298 68 13 13 chr4 194731943 194732254 -7596093 - AluY SINE Alu 0 311 1 2259 84 3 10 chr4 194732283 194732581 -7595766 + AluY SINE Alu 1 296 -15 2270 113 0 3 chr4 194733856 194734158 -7594189 + AluSx SINE Alu 1 301 -11 285 318 36 18 chr4 194734161 194734271 -7594076 + L2 LINE L2 3160 3271 -1 2250 82 0 3 chr4 194734726 194735008 -7593339 - AluY SINE Alu -26 285 5 2713 13 10 0 chr4 194735255 194735554 -7592793 + AluY SINE Alu 1 302 -9 1599 154 6 64 chr4 194736461 194736675 -7591672 + AluJo SINE Alu 1 193 -119 1957 210 35 35 chr4 194736675 194737133 -7591214 - LTR22A LTR ERVK 0 458 1 1599 154 6 64 chr4 194737133 194737229 -7591118 + AluJo SINE Alu 193 293 -19 257 250 205 20 chr4 194737379 194737579 -7590768 + L1ME4a LINE L1 5710 5946 -175 526 231 115 0 chr4 194737594 194737750 -7590597 - MIR SINE MIR -26 236 63 236 235 59 0 chr4 194737753 194737821 -7590526 + L1ME4a LINE L1 5972 6043 -78 2486 74 0 13 chr4 194738628 194738937 -7589410 + AluSx SINE Alu 1 305 -7 2213 79 7 20 chr4 194740052 194740355 -7587992 + AluY SINE Alu 2 300 -11 414 266 150 34 chr4 194741523 194741756 -7586591 - L2 LINE L2 -4 3309 3050 740 140 9 0 chr4 194742123 194742230 -7586117 - AluJb SINE Alu -203 109 2 35 0 0 0 chr4 194742243 194742278 -7586069 + AT_rich Low_complexity Low_complexity 1 35 0 275 0 0 28 chr4 194742410 194742446 -7585901 + (TG)n Simple_repeat Simple_repeat 2 36 0 490 238 113 13 chr4 194742446 194742597 -7585750 - FRAM SINE Alu -11 165 1 414 145 0 0 chr4 194743891 194743953 -7584394 - Alu SINE Alu -17 295 234 772 133 133 0 chr4 194743957 194744108 -7584239 + LTR36 LTR ERV1 1 171 -440 1650 174 0 57 chr4 194744229 194744546 -7583801 + AluJo SINE Alu 3 301 -11 2512 31 7 3 chr4 194744901 194745194 -7583153 + AluY SINE Alu 1 294 -17 1884 147 3 23 chr4 194745742 194746048 -7582299 - AluJb SINE Alu -12 300 1 2292 92 7 3 chr4 194746465 194746770 -7581577 - AluSq SINE Alu -7 306 1 502 198 112 0 chr4 194747098 194747214 -7581133 + FLAM_C SINE Alu 1 129 -4 2183 101 0 0 chr4 194748045 194748333 -7580014 - AluSx SINE Alu -24 288 1 2386 97 0 3 chr4 194749225 194749536 -7578811 + AluY SINE Alu 1 310 -1 227 250 25 12 chr4 194749948 194750102 -7578245 + C-rich Low_complexity Low_complexity 1 155 0 186 297 196 14 chr4 194750890 194751028 -7577319 - L3 LINE CR1 -351 1226 1064 517 353 78 5 chr4 194751316 194751534 -7576813 + MIR SINE MIR 23 256 -6 963 245 90 78 chr4 194751683 194751878 -7576469 + MLT1J LTR MaLR 5 196 -315 2377 92 0 0 chr4 194751878 194752173 -7576174 + AluSg SINE Alu 1 295 -15 963 245 90 78 chr4 194752173 194752377 -7575970 + MLT1J LTR MaLR 196 409 -102 2398 142 78 7 chr4 194752377 194752787 -7575560 + L1MA9 LINE L1 5800 6238 -74 973 156 0 24 chr4 194752787 194752954 -7575393 + AluJb SINE Alu 128 290 -22 340 206 0 0 chr4 194752957 194753025 -7575322 + L1MA9 LINE L1 6245 6312 0 229 276 0 26 chr4 194753025 194753101 -7575246 + MLT1J LTR MaLR 435 508 -3 1138 209 14 23 chr4 194753134 194753354 -7574993 + MER20 DNA MER1_type 1 218 -1 594 238 16 8 chr4 194753591 194753717 -7574630 + MER5B DNA MER1_type 8 134 -44 234 200 60 0 chr4 194754241 194754291 -7574056 - MER5B DNA MER1_type -124 54 2 1363 110 143 0 chr4 194754688 194754897 -7573450 + AluSx SINE Alu 1 239 -73 2517 145 26 7 chr4 194755283 194755711 -7572636 + L1MB7 LINE L1 5728 6163 -21 684 164 0 0 chr4 194756032 194756142 -7572205 - FLAM_C SINE Alu -7 136 27 553 231 9 0 chr4 194756376 194756512 -7571835 + FLAM_A SINE Alu 13 149 0 325 111 0 0 chr4 194758004 194758049 -7570298 + AluSx SINE Alu 246 290 -12 3074 212 101 13 chr4 194758077 194759032 -7569315 - L1ME2 LINE L1 -9 6089 5041 1109 208 49 63 chr4 194759011 194759502 -7568845 - L1ME2 LINE L1 -5066 1004 521 * 275 311 108 79 chr4 194759656 194760074 -7568273 - L1ME2 LINE L1 -5543 527 98 256 200 0 22 chr4 194760144 194760189 -7568158 + Tigger5 DNA MER2_type 2280 2323 0 2543 120 55 79 chr4 194760304 194760399 -7567948 - L1MB2 LINE L1 -3 6168 6072 2198 106 0 0 chr4 194760399 194760682 -7567665 - AluSx SINE Alu -29 283 1 2543 120 55 79 chr4 194760682 194760983 -7567364 - L1MB2 LINE L1 -99 6072 5784 357 24 0 0 chr4 194760983 194761025 -7567322 + (TG)n Simple_repeat Simple_repeat 1 42 0 2543 120 55 79 chr4 194761025 194761119 -7567228 - L1MB2 LINE L1 -387 5784 5689 2306 109 0 3 chr4 194762841 194763154 -7565193 - AluSx SINE Alu 0 312 1 184 361 59 30 chr4 194763974 194764143 -7564204 + L2 LINE L2 2590 2763 -551 2412 97 0 0 chr4 194764510 194764819 -7563528 - AluSx SINE Alu -3 309 1 270 111 0 0 chr4 194764881 194764917 -7563430 - Alu SINE Alu -263 36 1 333 200 305 11 chr4 194765098 194765193 -7563154 + MIR3 SINE MIR 8 130 -78 2048 139 7 0 chr4 194766006 194766309 -7562038 - AluJb SINE Alu -7 305 1 1102 151 56 36 chr4 194766778 194767029 -7561318 + MER33 DNA MER1_type 1 256 -68 404 133 48 12 chr4 194767071 194767154 -7561193 + MER33 DNA MER1_type 278 363 0 963 175 22 98 chr4 194767299 194767573 -7560774 - LTR41 LTR ERVL -11 762 510 682 251 5 26 chr4 194767727 194767918 -7560429 - LTR41 LTR ERVL -586 187 1 255 261 0 43 chr4 194769404 194769473 -7558874 + MER112 DNA MER1_type 1 66 -194 562 187 20 87 chr4 194769652 194769744 -7558603 - Charlie1 DNA MER1_type 0 2761 2681 860 235 61 0 chr4 194769744 194769940 -7558407 - MER63A DNA MER1_type -1 209 2 562 187 20 87 chr4 194769940 194769997 -7558350 - Charlie1 DNA MER1_type -80 2681 2622 * 812 249 113 0 chr4 194769984 194770197 -7558150 - Charlie1 DNA MER1_type -2524 237 1 207 0 0 0 chr4 194770476 194770499 -7557848 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 417 39 0 0 chr4 194770500 194770551 -7557796 + (TG)n Simple_repeat Simple_repeat 2 52 0 2043 120 23 0 chr4 194770559 194770859 -7557488 - AluSx SINE Alu -5 307 1 279 343 48 0 chr4 194771969 194772115 -7556232 + MIR SINE MIR 66 218 -44 231 228 33 33 chr4 194774280 194774372 -7553975 + (TATG)n Simple_repeat Simple_repeat 4 95 0 885 147 0 29 chr4 194774380 194774516 -7553831 - FLAM_C SINE Alu -1 132 1 3418 115 70 2 chr4 194774585 194775114 -7553233 - Tigger3(Golem) DNA MER2_type -1 3028 2464 977 158 261 5 chr4 194775108 194775311 -7553036 - Tigger3(Golem) DNA MER2_type -2774 255 1 * 2336 95 0 3 chr4 194775750 194776046 -7552301 - AluSx SINE Alu -17 295 1 2048 115 7 14 chr4 194776830 194777116 -7551231 + AluSx SINE Alu 1 284 -28 4357 15 11 0 chr4 194777199 194777664 -7550683 + SVA Other Other 917 1386 0 268 179 24 48 chr4 194777698 194777782 -7550565 + A-rich Low_complexity Low_complexity 2 83 0 610 136 107 95 chr4 194777924 194777948 -7550399 + MER63 DNA MER1_type 889 911 -149 2798 19 0 0 chr4 194777948 194778259 -7550088 - AluYa5 SINE Alu 0 311 1 610 136 107 95 chr4 194778259 194778403 -7549944 + MER63 DNA MER1_type 911 1059 -1 561 227 46 77 chr4 194778532 194778726 -7549621 + MIR SINE MIR 15 202 -60 225 0 0 0 chr4 194778726 194778751 -7549596 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 221 235 31 10 chr4 194779304 194779402 -7548945 + (TA)n Simple_repeat Simple_repeat 2 101 0 454 266 160 99 chr4 194779824 194780150 -7548197 + L1ME4a LINE L1 5396 5701 -420 1763 135 49 31 chr4 194780150 194780438 -7547909 - AluJb SINE Alu -14 298 6 454 266 160 99 chr4 194780438 194780779 -7547568 + L1ME4a LINE L1 5701 6104 -17 2743 187 109 7 chr4 194780804 194781409 -7546938 + LTR65 LTR ERV1 1 667 -2 605 326 19 12 chr4 194781528 194781786 -7546561 - MIR SINE MIR 0 262 3 2209 128 0 0 chr4 194781959 194782265 -7546082 + AluSx SINE Alu 1 306 -6 1911 102 0 26 chr4 194782429 194782694 -7545653 - AluSq SINE Alu -55 258 1 201 293 13 40 chr4 194783280 194783355 -7544992 - L2 LINE L2 -8 3264 3192 418 330 100 13 chr4 194783857 194784087 -7544260 + MIR SINE MIR 13 262 0 222 400 91 0 chr4 194784283 194784393 -7543954 - L2 LINE L2 -16 3256 3137 407 294 44 112 chr4 194785811 194785999 -7542348 - MLT1J LTR MaLR -2 509 310 2003 141 0 16 chr4 194785999 194786304 -7542043 - AluJo SINE Alu -12 300 1 407 294 44 112 chr4 194786304 194786320 -7542027 - MLT1J LTR MaLR -201 310 294 1698 164 21 14 chr4 194786320 194786637 -7541710 - AluJo SINE Alu 0 319 1 407 294 44 112 chr4 194786637 194786974 -7541373 - MLT1J LTR MaLR -217 294 2 290 289 41 0 chr4 194787516 194787613 -7540734 - MER5B DNA MER1_type -3 175 75 752 232 124 5 chr4 194787704 194787889 -7540458 + MER3 DNA MER1_type 1 207 -2 405 297 173 42 chr4 194789384 194789876 -7538471 - L2 LINE L2 -5 3308 2712 1971 153 14 101 chr4 194790073 194790497 -7537850 - MLT1B LTR MaLR -3 387 1 812 213 92 35 chr4 194790985 194791410 -7536937 - LTR56 LTR ERV1 -5 440 9 1718 129 43 18 chr4 194791425 194791705 -7536642 - L1MB3 LINE L1 -5 6178 5892 1906 212 45 23 chr4 194791710 194792153 -7536194 - MLT1C LTR MaLR -9 458 6 2363 174 106 13 chr4 194792489 194792539 -7535808 + L1MB7 LINE L1 5115 5159 -1024 1486 173 29 59 chr4 194792539 194792615 -7535732 + AluJo SINE Alu 1 78 -234 2136 101 0 17 chr4 194792615 194792931 -7535416 - AluSq SINE Alu 0 311 1 1486 173 29 59 chr4 194792931 194793159 -7535188 + AluJo SINE Alu 78 298 -14 2363 174 106 13 chr4 194793159 194793798 -7534549 + L1MB7 LINE L1 5159 5971 -212 350 292 58 32 chr4 194794518 194794672 -7533675 + MIR3 SINE MIR 19 176 -32 21 36 0 0 chr4 194795011 194795039 -7533308 + AT_rich Low_complexity Low_complexity 1 28 0 1989 146 10 0 chr4 194795680 194795974 -7532373 - AluJb SINE Alu -15 297 1 1144 188 74 106 chr4 194796128 194796505 -7531842 - MLT1A1 LTR MaLR 0 365 1 947 326 118 33 chr4 194797149 194797377 -7530970 + L2 LINE L2 1914 2121 -1151 953 207 83 0 chr4 194797377 194797570 -7530777 - MER3 DNA MER1_type 0 209 1 947 326 118 33 chr4 194797570 194797777 -7530570 + L2 LINE L2 2121 2309 -963 1632 228 52 25 chr4 194797777 194798141 -7530206 - MLT1A2 LTR MaLR 0 374 1 947 326 118 33 chr4 194798141 194798316 -7530031 + L2 LINE L2 2309 2468 -804 2342 114 0 0 chr4 194798316 194798622 -7529725 - AluSx SINE Alu -6 306 1 947 326 118 33 chr4 194798622 194799067 -7529280 + L2 LINE L2 2468 3051 -221 832 216 21 26 chr4 194799614 194799804 -7528543 - MER5A DNA MER1_type 0 189 1 2054 106 7 33 chr4 194800395 194800698 -7527649 - AluSx SINE Alu -17 295 1 938 131 7 0 chr4 194800913 194801050 -7527297 + MLT1A1 LTR MaLR 1 138 -227 2449 131 119 71 chr4 194801050 194801071 -7527276 + MER21A LTR ERV1 1 20 -911 405 0 0 0 chr4 194801071 194801116 -7527231 + (CA)n Simple_repeat Simple_repeat 2 46 0 2449 131 119 71 chr4 194801116 194801613 -7526734 + MER21A LTR ERV1 20 544 -387 1023 146 0 0 chr4 194801621 194801779 -7526568 - AluSg/x SINE Alu -1 309 152 2087 166 35 69 chr4 194801781 194801817 -7526530 + MER21A LTR ERV1 516 552 -379 2252 123 0 0 chr4 194801817 194802127 -7526220 - AluSx SINE Alu -2 310 1 2087 166 35 69 chr4 194802127 194802139 -7526208 + MER21A LTR ERV1 552 563 -368 1490 131 22 118 chr4 194802139 194802453 -7525894 - AluYb8 SINE Alu -11 307 24 2087 166 35 69 chr4 194802453 194802826 -7525521 + MER21A LTR ERV1 563 924 -7 520 187 21 2 chr4 194802830 194803005 -7525342 + MLT1A1 LTR MaLR 133 345 -20 367 273 55 67 chr4 194803240 194803405 -7524942 - MIR3 SINE MIR -32 176 14 2564 69 0 0 chr4 194803619 194803923 -7524424 + AluY SINE Alu 2 305 -6 545 218 0 0 chr4 194804381 194804482 -7523865 - FRAM SINE Alu -6 170 70 1478 151 0 48 chr4 194804487 194804605 -7523742 - AluJo SINE Alu -73 239 138 2126 113 7 0 chr4 194804605 194804898 -7523449 - AluSp SINE Alu -18 295 1 1478 151 0 48 chr4 194804898 194805030 -7523317 - AluJo SINE Alu -174 138 1 1305 133 10 5 chr4 194805333 194805536 -7522811 + MER20 DNA MER1_type 16 219 0 182 167 56 0 chr4 194805972 194806008 -7522339 - L3b LINE CR1 -241 1342 1305 544 139 0 0 chr4 194806067 194806146 -7522201 - MADE1 DNA Mariner -1 79 1 354 328 57 53 chr4 194807734 194807996 -7520351 + L2 LINE L2 1316 1578 -1736 1377 207 22 15 chr4 194808029 194808300 -7520047 - AluJo SINE Alu -39 273 1 22 0 0 0 chr4 194808468 194808490 -7519857 + AT_rich Low_complexity Low_complexity 1 22 0 284 275 43 0 chr4 194808564 194808633 -7519714 - MIR SINE MIR -162 100 29 292 276 86 0 chr4 194808635 194808751 -7519596 - L2 LINE L2 -1376 1938 1813 442 246 18 9 chr4 194808842 194808952 -7519395 - L2 LINE L2 0 3313 3203 1785 245 104 28 chr4 194809167 194809713 -7518634 - MLT1G1 LTR MaLR -7 588 1 643 343 103 39 chr4 194809714 194810308 -7518039 + L2 LINE L2 2344 2975 -339 232 266 31 16 chr4 194810491 194810555 -7517792 + L2 LINE L2 3204 3268 -4 180 111 0 0 chr4 194811266 194811293 -7517054 + (TG)n Simple_repeat Simple_repeat 1 27 0 234 331 130 24 chr4 194811434 194811603 -7516744 - MIR SINE MIR -71 191 5 225 0 0 0 chr4 194812193 194812218 -7516129 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 198 0 0 0 chr4 194812397 194812419 -7515928 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 317 326 63 0 chr4 194812419 194812514 -7515833 - L2 LINE L2 -13 3259 3159 2232 105 0 10 chr4 194812754 194813067 -7515280 - AluY SINE Alu -1 310 1 1084 208 104 29 chr4 194813345 194813730 -7514617 + L1M4 LINE L1 2154 2567 -3579 795 228 40 95 chr4 194813730 194813941 -7514406 + L1M4 LINE L1 2818 3039 -3107 2537 168 18 18 chr4 194813941 194814375 -7513972 - Tigger2a DNA MER2_type 0 434 1 795 228 40 95 chr4 194814375 194814450 -7513897 + L1M4 LINE L1 3039 3117 -3029 713 153 23 8 chr4 194814450 194814581 -7513766 + FLAM_C SINE Alu 1 133 0 795 228 40 95 chr4 194814581 194814820 -7513527 + L1M4 LINE L1 3117 3445 -2701 2399 94 0 0 chr4 194814820 194815129 -7513218 + AluSc SINE Alu 1 309 0 795 228 40 95 chr4 194815129 194815189 -7513158 + L1M4 LINE L1 3445 3507 -2639 2387 53 0 0 chr4 194815189 194815494 -7512853 + AluY SINE Alu 1 305 0 715 240 80 66 chr4 194815679 194815726 -7512621 + L1M4 LINE L1 3495 3540 -2606 2185 123 0 0 chr4 194815726 194816027 -7512320 - AluSx SINE Alu -11 301 1 715 240 80 66 chr4 194816027 194816267 -7512080 + L1M4 LINE L1 3540 3786 -2360 836 172 6 12 chr4 194816361 194816524 -7511823 - L1MA10 LINE L1 -1 6333 6172 508 262 80 15 chr4 194816706 194816885 -7511462 - MIR SINE MIR -64 198 13 6940 58 54 3 chr4 194817466 194818392 -7509955 + L1PA8 LINE L1 5201 6170 -2 208 267 267 13 chr4 194819155 194819230 -7509117 + L2 LINE L2 3192 3285 -28 1750 117 100 4 chr4 194819230 194819511 -7508836 + MER4C LTR ERV1 1 308 -157 220 27 54 0 chr4 194819511 194819548 -7508799 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 2292 98 7 3 chr4 194819627 194819932 -7508415 - AluSp SINE Alu -7 306 1 1315 71 0 6 chr4 194819963 194820132 -7508215 + MER4C LTR ERV1 298 465 0 5404 89 4 0 chr4 194820309 194821020 -7507327 + L1PA8A LINE L1 5392 6148 -15 2222 113 0 0 chr4 194821696 194821996 -7506351 - AluSx SINE Alu -12 300 1 1918 176 42 15 chr4 194822143 194822478 -7505869 - MER2 DNA MER2_type 0 344 1 2056 108 7 7 chr4 194822584 194822863 -7505484 + AluSg SINE Alu 1 279 -31 275 300 22 0 chr4 194823044 194823134 -7505213 + MARNA DNA Mariner 238 329 -257 3594 71 52 2 chr4 194824759 194825222 -7503125 - LTR19A LTR ERV1 0 486 1 3698 64 18 0 chr4 194825222 194825675 -7502672 - LTR19A-int LTR ERV1 0 5586 5126 * 16630 50 9 2 chr4 194825670 194825687 -7502660 - LTR19A-int LTR ERV1 -1205 4472 4457 2397 95 0 3 chr4 194825687 194825992 -7502355 + AluSg SINE Alu 2 305 -5 16630 50 9 2 chr4 194825992 194828054 -7500293 - LTR19A-int LTR ERV1 -1220 4457 2345 562 183 122 0 chr4 194828067 194828182 -7500165 + LTR8 LTR ERV1 129 257 -434 16750 78 22 13 chr4 194828182 194830113 -7498234 - LTR19A-int LTR ERV1 -3329 2257 303 203 0 37 0 chr4 194830113 194830140 -7498207 + (GA)n Simple_repeat Simple_repeat 2 29 0 16750 78 22 13 chr4 194830140 194830446 -7497901 - LTR19A-int LTR ERV1 -5283 303 1 3785 75 17 4 chr4 194830446 194830926 -7497421 - LTR19A LTR ERV1 0 486 1 2325 103 0 0 chr4 194831930 194832231 -7496116 + AluSx SINE Alu 1 301 -11 1502 170 66 24 chr4 194834198 194834487 -7493860 + AluJb SINE Alu 1 301 -11 2038 108 7 4 chr4 194834489 194834768 -7493579 + AluSx SINE Alu 1 280 -32 26 0 0 0 chr4 194835435 194835461 -7492886 + AT_rich Low_complexity Low_complexity 1 26 0 2036 118 10 7 chr4 194835470 194835751 -7492596 + AluSq SINE Alu 1 285 -28 378 0 0 0 chr4 194835751 194835793 -7492554 + (CA)n Simple_repeat Simple_repeat 1 42 0 2036 118 10 7 chr4 194835793 194835807 -7492540 + AluSq SINE Alu 285 297 -16 195 279 77 19 chr4 194836217 194836321 -7492026 - L2 LINE L2 -45 3268 3159 3305 174 62 18 chr4 194836547 194836611 -7491736 - L1MB3 LINE L1 0 6183 6123 6907 81 4 4 chr4 194836611 194837597 -7490750 - L1PB1 LINE L1 -1 6150 5154 3305 174 62 18 chr4 194837597 194838215 -7490132 - L1MB3 LINE L1 -60 6123 5471 * 4337 222 32 52 chr4 194837671 194838712 -7489635 - L1MD3 LINE L1 -743 5403 5032 2108 107 3 42 chr4 194838712 194839020 -7489327 - AluSx SINE Alu -15 297 2 4337 222 32 52 chr4 194839020 194839781 -7488566 - L1MD3 LINE L1 -1114 5032 4257 253 311 76 8 chr4 194841346 194841478 -7486869 + MIR SINE MIR 37 177 -85 997 162 126 5 chr4 194841864 194842232 -7486115 - MLT1E2 LTR MaLR 0 626 116 234 228 18 0 chr4 194842230 194842287 -7486060 - MLT1E2 LTR MaLR -507 147 90 * 709 262 24 83 chr4 194843202 194843293 -7485054 + MIR SINE MIR 2 97 -165 231 36 0 0 chr4 194843293 194843321 -7485026 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 709 262 24 83 chr4 194843321 194843332 -7485015 + MIR SINE MIR 97 107 -155 2310 87 0 0 chr4 194843332 194843620 -7484727 - AluSx SINE Alu -24 288 1 709 262 24 83 chr4 194843620 194843768 -7484579 + MIR SINE MIR 107 238 -24 490 184 29 103 chr4 194843793 194843929 -7484418 - MER112 DNA MER1_type -133 127 2 201 296 92 31 chr4 194843930 194844028 -7484319 - MIR3 SINE MIR -48 160 57 314 215 7 104 chr4 194844211 194844355 -7483992 - LTR38B LTR ERV1 0 610 481 1997 152 0 7 chr4 194844366 194844668 -7483679 + AluSx SINE Alu 1 300 -12 236 261 15 15 chr4 194844836 194844901 -7483446 - LTR38 LTR ERV1 -362 194 130 370 273 0 50 chr4 194845009 194845130 -7483217 - LTR38B LTR ERV1 -495 115 1 226 304 76 0 chr4 194845778 194845857 -7482490 + MIR SINE MIR 161 245 -17 1939 162 17 0 chr4 194845942 194846239 -7482108 + AluJb SINE Alu 1 302 -10 2025 131 10 3 chr4 194846282 194846587 -7481760 - AluSx SINE Alu -5 307 1 1567 247 77 17 chr4 194847218 194847688 -7480659 - L1ME3A LINE L1 -8 6162 5665 544 210 65 7 chr4 194847719 194847857 -7480490 - L1ME3A LINE L1 -599 5575 5430 2232 82 7 0 chr4 194847868 194848195 -7480152 - AluSp SINE Alu 0 329 1 632 275 38 8 chr4 194848262 194848502 -7479845 - L1ME3A LINE L1 -877 5269 5023 336 156 31 0 chr4 194848749 194848813 -7479534 - L1MA5 LINE L1 -6 6294 6229 2119 125 0 13 chr4 194848816 194849121 -7479226 - AluSx SINE Alu -11 301 1 4604 133 67 29 chr4 194849121 194849502 -7478845 - L1MA6 LINE L1 -120 6180 5815 1357 91 152 0 chr4 194849502 194849700 -7478647 + MER30 DNA MER1_type 3 230 0 4604 133 67 29 chr4 194849700 194850190 -7478157 - L1MA6 LINE L1 -485 5815 5276 1988 125 0 4 chr4 194851003 194851307 -7477040 + AluSg SINE Alu 1 303 0 540 263 39 13 chr4 194851341 194851497 -7476850 - Tigger8 DNA MER2_type -468 198 39 2288 92 7 0 chr4 194854184 194854478 -7473869 + AluSc SINE Alu 1 296 -13 848 220 28 0 chr4 194854815 194854992 -7473355 + MER20 DNA MER1_type 37 218 -1 247 265 0 0 chr4 194855560 194855609 -7472738 + L2 LINE L2 3204 3252 -20 341 333 75 0 chr4 194855932 194856079 -7472268 + L1ME LINE L1 5663 5820 -301 232 242 120 34 chr4 194857437 194857577 -7470770 - MIR SINE MIR -62 146 13 275 270 86 63 chr4 194858936 194859110 -7469237 - MIR3 SINE MIR -5 203 26 1588 176 53 14 chr4 194859490 194859774 -7468573 + AluJb SINE Alu 1 295 -17 1250 108 0 18 chr4 194859931 194860098 -7468249 + AluSx SINE Alu 1 164 -148 1923 72 111 4 chr4 194861086 194861348 -7466999 + AluSg SINE Alu 1 290 -20 207 0 0 0 chr4 194861350 194861373 -7466974 + (TA)n Simple_repeat Simple_repeat 2 24 0 2181 111 0 0 chr4 194861875 194862163 -7466184 + AluSx SINE Alu 1 288 -24 25 0 0 0 chr4 194862163 194862188 -7466159 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr4 194862789 194862818 -7465529 + AT_rich Low_complexity Low_complexity 1 29 0 2320 100 0 0 chr4 194863257 194863558 -7464789 - AluSq SINE Alu -8 305 5 23 54 0 0 chr4 194864160 194864197 -7464150 + AT_rich Low_complexity Low_complexity 1 37 0 321 26 0 0 chr4 194865423 194865461 -7462886 + (TG)n Simple_repeat Simple_repeat 2 39 0 2252 93 7 3 chr4 194865773 194866073 -7462274 - AluSq SINE Alu -12 301 1 243 0 0 0 chr4 194866110 194866137 -7462210 + (TAA)n Simple_repeat Simple_repeat 2 28 0 29 60 0 0 chr4 194867092 194867142 -7461205 + AT_rich Low_complexity Low_complexity 1 50 0 180 111 0 0 chr4 194867716 194867743 -7460604 + (T)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr4 194868025 194868047 -7460300 + AT_rich Low_complexity Low_complexity 1 22 0 307 333 10 10 chr4 194868126 194868228 -7460119 - L3 LINE CR1 -45 1532 1431 2209 66 21 0 chr4 194868317 194868605 -7459742 + AluY SINE Alu 1 294 -17 425 292 72 34 chr4 194868924 194869133 -7459214 - L3 LINE CR1 -323 1254 1038 1886 161 7 0 chr4 194869203 194869502 -7458845 - AluSx SINE Alu -9 303 3 1888 98 41 82 chr4 194869638 194869954 -7458393 - AluSx SINE Alu -9 303 1 636 267 55 0 chr4 194870125 194870290 -7458057 - MER5B DNA MER1_type -4 174 1 2541 52 3 10 chr4 194871668 194871973 -7456374 + AluY SINE Alu 1 303 -8 354 155 14 14 chr4 194872786 194872857 -7455490 - Charlie5 DNA MER1_type -2506 106 36 616 232 81 15 chr4 194872955 194873260 -7455087 + MSTD LTR MaLR 1 396 0 608 120 65 0 chr4 194875522 194875614 -7452733 - AluY SINE Alu -11 300 203 448 89 0 0 chr4 194875614 194875670 -7452677 - AluSp SINE Alu -132 171 116 1497 112 18 5 chr4 194875670 194875893 -7452454 + AluSg/x SINE Alu 87 312 0 324 70 0 0 chr4 194876014 194876057 -7452290 + (TA)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr4 194876057 194876079 -7452268 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 194876269 194876290 -7452057 + AT_rich Low_complexity Low_complexity 1 21 0 214 325 35 44 chr4 194876309 194876423 -7451924 - MIR SINE MIR -142 120 8 2107 85 3 56 chr4 194876813 194877119 -7451228 - AluSx SINE Alu -22 290 1 24 85 0 0 chr4 194877121 194877180 -7451167 + AT_rich Low_complexity Low_complexity 1 59 0 2167 91 3 3 chr4 194877761 194878066 -7450281 + AluSp SINE Alu 1 305 0 285 264 7 81 chr4 194879597 194879745 -7448602 + MIR3 SINE MIR 72 208 0 442 275 77 55 chr4 194880118 194880300 -7448047 - MIR SINE MIR -10 252 67 207 0 0 0 chr4 194880339 194880362 -7447985 + (TC)n Simple_repeat Simple_repeat 2 24 0 1392 204 7 25 chr4 194880362 194880647 -7447700 - AluJo SINE Alu -30 282 3 1715 214 35 33 chr4 194880800 194881259 -7447088 - MLT1C LTR MaLR -2 465 6 461 208 28 35 chr4 194881321 194881465 -7446882 - L1MEd LINE L1 -5022 1097 955 2007 232 92 4 chr4 194881469 194882026 -7446321 - L1ME3A LINE L1 -5 6165 5560 4846 165 73 4 chr4 194882395 194883606 -7444741 - L1MB7 LINE L1 -19 6165 4884 1746 172 0 27 chr4 194883716 194884012 -7444335 + AluJo SINE Alu 1 288 -24 1587 243 84 25 chr4 194884071 194884556 -7443791 + MER68 LTR ERV1 1 514 -48 1753 152 70 42 chr4 194884567 194884922 -7443425 + MLT1A1 LTR MaLR 1 365 0 2126 111 0 0 chr4 194886147 194886427 -7441920 + AluSg SINE Alu 1 280 -30 300 205 0 60 chr4 194886499 194886582 -7441765 - L2 LINE L2 -2918 396 319 263 274 122 29 chr4 194886604 194886849 -7441498 + L1P LINE L1 4067 4334 -1812 1955 112 45 0 chr4 194887491 194887778 -7440569 + AluSx SINE Alu 1 300 -12 620 245 84 75 chr4 194887804 194888139 -7440208 - MER46C DNA MER2_type 0 338 1 424 134 0 45 chr4 194888957 194889069 -7439278 + (CCTA)n Simple_repeat Simple_repeat 1 107 0 38 0 0 33 chr4 194889392 194889415 -7438932 + AT_rich Low_complexity Low_complexity 1 23 -35 2206 103 0 17 chr4 194889415 194889707 -7438640 - AluSc SINE Alu -22 287 1 38 0 0 33 chr4 194889707 194889725 -7438622 + AT_rich Low_complexity Low_complexity 23 40 -18 2251 105 0 13 chr4 194889725 194890038 -7438309 - AluSg SINE Alu -1 309 1 38 0 0 33 chr4 194890038 194890055 -7438292 + AT_rich Low_complexity Low_complexity 40 58 0 2262 110 0 25 chr4 194890757 194891075 -7437272 + AluSx SINE Alu 1 310 -2 5381 207 63 21 chr4 194891320 194892609 -7435738 - L1MC3 LINE L1 0 7785 6443 1978 127 11 3 chr4 194893474 194893758 -7434589 - AluSx SINE Alu -24 288 3 2320 93 0 0 chr4 194894047 194894347 -7434000 - AluSq SINE Alu -5 308 9 2376 76 0 13 chr4 194894675 194894979 -7433368 + AluSq SINE Alu 1 300 -13 1309 172 11 30 chr4 194894989 194895257 -7433090 + AluJo SINE Alu 42 304 -8 283 291 209 13 chr4 194895269 194895427 -7432920 + MIR SINE MIR 64 252 -10 1936 149 3 13 chr4 194895726 194896035 -7432312 + AluSx SINE Alu 1 306 -6 464 261 100 8 chr4 194896107 194896237 -7432110 + MIR SINE MIR 10 151 -111 3769 212 147 37 chr4 194898235 194899538 -7428809 - L1M4 LINE L1 -2212 3934 2445 2191 99 7 7 chr4 194899538 194899831 -7428516 - AluSq SINE Alu -20 293 1 3769 212 147 37 chr4 194899831 194900022 -7428325 - L1M4 LINE L1 -3701 2445 2276 561 176 14 35 chr4 194900146 194900288 -7428059 + HAL1b LINE L1 683 821 -527 448 207 58 0 chr4 194900312 194900399 -7427948 + L2 LINE L2 3220 3311 -2 26 64 0 0 chr4 194900552 194900599 -7427748 + AT_rich Low_complexity Low_complexity 1 47 0 2064 137 20 0 chr4 194900715 194901014 -7427333 - AluSx SINE Alu -7 305 1 265 150 0 0 chr4 194901898 194901938 -7426409 - Alu SINE Alu -262 40 1 2108 136 36 28 chr4 194902341 194902701 -7425646 - THE1B LTR MaLR -1 363 1 2234 99 10 0 chr4 194902867 194903160 -7425187 - AluSg SINE Alu -14 296 1 1908 165 7 7 chr4 194904089 194904386 -7423961 - AluJb SINE Alu -15 297 1 2276 89 0 41 chr4 194905295 194905611 -7422736 + AluSq SINE Alu 3 305 -8 2534 50 3 0 chr4 194906248 194906548 -7421799 + AluY SINE Alu 1 301 -10 2429 80 3 0 chr4 194907588 194907887 -7420460 + AluSp SINE Alu 2 301 -12 963 0 0 0 chr4 194909475 194909579 -7418768 + AluYb8 SINE Alu 1 104 -214 2309 93 0 16 chr4 194909930 194910235 -7418112 + AluSx SINE Alu 1 301 -6 222 37 0 0 chr4 194910235 194910262 -7418085 + (TA)n Simple_repeat Simple_repeat 1 27 0 351 283 62 55 chr4 194910287 194910722 -7417625 + L1M4 LINE L1 3380 3817 -2329 439 310 222 27 chr4 194910869 194911527 -7416820 + L1M4 LINE L1 4045 4830 -1316 608 201 22 30 chr4 194911626 194911792 -7416555 - L1ME1 LINE L1 0 6178 6013 61 52 0 0 chr4 194911870 194911966 -7416381 + AT_rich Low_complexity Low_complexity 1 96 0 309 290 76 49 chr4 194912049 194912273 -7416074 + L1M4 LINE L1 5131 5360 -786 1052 147 6 6 chr4 194912459 194912622 -7415725 + AluSg/x SINE Alu 132 294 -18 326 275 83 0 chr4 194913381 194913490 -7414857 + MIR SINE MIR 87 204 -58 27 49 0 0 chr4 194913519 194913560 -7414787 + AT_rich Low_complexity Low_complexity 1 41 0 307 174 47 23 chr4 194913577 194913663 -7414684 - L1MC4 LINE L1 -1341 6701 6614 23 33 0 0 chr4 194913692 194913722 -7414625 + AT_rich Low_complexity Low_complexity 1 30 0 375 143 25 25 chr4 194913727 194913846 -7414501 + (TA)n Simple_repeat Simple_repeat 1 119 0 371 297 22 54 chr4 194914323 194914508 -7413839 - MER5A DNA MER1_type 0 189 11 3225 258 56 20 chr4 194914564 194915699 -7412648 + L1MEc LINE L1 408 1583 -4813 2186 92 0 0 chr4 194916833 194917149 -7411198 - AluSg SINE Alu 0 316 1 21 0 0 0 chr4 194917335 194917356 -7410991 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4 194917700 194917725 -7410622 + AT_rich Low_complexity Low_complexity 1 25 0 2154 93 3 10 chr4 194918542 194918833 -7409514 + AluSx SINE Alu 5 293 -19 1683 163 10 26 chr4 194919332 194919638 -7408709 - AluJo SINE Alu -7 305 5 2477 59 13 0 chr4 194919655 194919959 -7408388 - AluSx SINE Alu -4 308 1 1448 109 0 14 chr4 194920155 194920366 -7407981 - AluSg/x SINE Alu -3 309 102 707 125 0 0 chr4 194920584 194920688 -7407659 + AluSg/x SINE Alu 197 300 -12 1960 147 3 3 chr4 194920705 194920998 -7407349 - AluJo SINE Alu -19 293 1 219 304 14 14 chr4 194921829 194921898 -7406449 - MIR3 SINE MIR -16 192 124 846 219 11 0 chr4 194922001 194922179 -7406168 + L1ME LINE L1 5625 5804 -358 2415 90 0 0 chr4 194922349 194922650 -7405697 - AluSg SINE Alu -9 301 1 1814 150 24 0 chr4 194922672 194922959 -7405388 - AluJo SINE Alu -18 294 1 450 147 0 0 chr4 194923191 194923266 -7405081 - L1MC4a LINE L1 -1895 5913 5839 1367 176 40 37 chr4 194923609 194923905 -7404442 + AluJo SINE Alu 2 298 -14 21 36 0 0 chr4 194923995 194924023 -7404324 + AT_rich Low_complexity Low_complexity 1 28 0 2050 98 54 0 chr4 194924992 194925288 -7403059 - AluSx SINE Alu 0 312 1 185 228 0 105 chr4 194925395 194925452 -7402895 - L2 LINE L2 -50 3222 3172 591 113 0 0 chr4 194925621 194925718 -7402629 - AluS SINE Alu -215 97 1 225 318 85 8 chr4 194925762 194925891 -7402456 - L2 LINE L2 0 3313 3175 802 291 99 15 chr4 194927042 194927444 -7400903 + L2 LINE L2 2203 2638 -676 186 296 0 37 chr4 194927490 194927544 -7400803 + L2 LINE L2 2992 3043 -270 277 290 124 41 chr4 194927576 194927721 -7400626 - MIR SINE MIR -51 211 55 406 238 108 45 chr4 194927749 194927972 -7400375 - L1ME4a LINE L1 -274 5847 5611 259 196 80 123 chr4 194928041 194928135 -7400212 + MIR SINE MIR 131 219 -43 1856 149 3 19 chr4 194928135 194928450 -7399897 - AluJb SINE Alu -2 310 1 259 196 80 123 chr4 194928450 194928493 -7399854 + MIR SINE MIR 219 262 0 202 211 0 0 chr4 194928601 194928639 -7399708 + CT-rich Low_complexity Low_complexity 1 38 0 327 179 0 0 chr4 194928640 194928707 -7399640 + (TATG)n Simple_repeat Simple_repeat 4 70 0 246 167 322 11 chr4 194928853 194928943 -7399404 - L1P4 LINE L1 -316 5845 5728 * 286 259 106 47 chr4 194928928 194929098 -7399249 - L1ME LINE L1 -418 5703 5524 641 139 46 129 chr4 194929238 194929310 -7399037 + MER5B DNA MER1_type 1 77 -101 2101 123 3 0 chr4 194929310 194929602 -7398745 + AluSx SINE Alu 1 293 -19 641 139 46 129 chr4 194929602 194929723 -7398624 + MER5B DNA MER1_type 77 178 0 243 308 133 17 chr4 194930026 194930146 -7398201 - MIR SINE MIR -96 166 33 570 263 51 11 chr4 194930151 194930326 -7398021 - MER91B DNA MER1_type -8 182 1 233 360 128 9 chr4 194930457 194930668 -7397679 - L2 LINE L2 -897 2417 2182 2358 139 51 12 chr4 194930737 194931147 -7397200 - MSTB LTR MaLR 0 426 1 379 238 99 20 chr4 194931287 194931388 -7396959 + MER5B DNA MER1_type 69 177 -1 23 0 0 0 chr4 194931951 194931974 -7396373 + AT_rich Low_complexity Low_complexity 1 23 0 241 218 150 68 chr4 194932226 194932359 -7395988 + L1MC4a LINE L1 6210 6353 -1455 2379 152 51 11 chr4 194932416 194932870 -7395477 + L1MB7 LINE L1 5514 5985 -199 205 276 143 19 chr4 194932882 194932987 -7395360 - MIR SINE MIR -112 150 33 2560 37 3 0 chr4 194933039 194933334 -7395013 + AluY SINE Alu 1 296 -15 810 194 50 0 chr4 194933377 194933537 -7394810 + L1MB7 LINE L1 5996 6163 -21 307 336 75 0 chr4 194934068 194934175 -7394172 - MIR3 SINE MIR -9 199 85 1891 123 14 3 chr4 194934404 194934688 -7393659 - AluSq SINE Alu -26 287 1 212 326 0 0 chr4 194934713 194934762 -7393585 - L2 LINE L2 -21 3251 3203 2231 215 172 6 chr4 194935157 194935803 -7392544 - L1MC4 LINE L1 -468 7574 6822 425 229 262 16 chr4 194935870 194936114 -7392233 - L1MC4a LINE L1 -1226 6582 6279 389 254 70 21 chr4 194936132 194936274 -7392073 - L1MC5 LINE L1 -49 7912 7764 760 89 9 18 chr4 194936363 194936475 -7391872 + HY1 scRNA scRNA 1 111 -1 24 0 0 0 chr4 194938291 194938315 -7390032 + AT_rich Low_complexity Low_complexity 1 24 0 1623 101 0 0 chr4 194939047 194939255 -7389092 - AluSg/x SINE Alu -15 297 90 1223 129 6 0 chr4 194939255 194939426 -7388921 - AluSq SINE Alu -141 172 1 238 260 150 0 chr4 194940737 194940837 -7387510 - L1MC4 LINE L1 -89 7953 7839 662 329 36 6 chr4 194940865 194941227 -7387120 - L1M4 LINE L1 -2325 3821 3449 517 239 67 39 chr4 194941311 194941477 -7386870 - L1M4 LINE L1 -2929 3217 3057 2335 94 0 3 chr4 194941477 194941785 -7386562 - AluSg SINE Alu -3 307 1 2121 114 7 0 chr4 194941790 194942080 -7386267 - AluSx SINE Alu -18 294 3 517 239 67 39 chr4 194942080 194942263 -7386084 - L1M4 LINE L1 -3092 3054 2852 203 184 0 0 chr4 194942270 194942308 -7386039 + T-rich Low_complexity Low_complexity 1 38 0 726 222 89 58 chr4 194942394 194942831 -7385516 - MLT1D LTR MaLR -24 481 1 823 173 0 0 chr4 194942961 194943094 -7385253 + FLAM_A SINE Alu 1 133 0 681 264 153 67 chr4 194943317 194943835 -7384512 - L2 LINE L2 -1 3312 2777 22 56 0 0 chr4 194945000 194945036 -7383311 + AT_rich Low_complexity Low_complexity 1 36 0 2222 108 0 40 chr4 194945096 194945421 -7382926 + AluSx SINE Alu 1 312 0 2275 94 0 0 chr4 194945574 194945862 -7382485 + AluSx SINE Alu 1 288 -24 21 36 0 0 chr4 194946459 194946487 -7381860 + AT_rich Low_complexity Low_complexity 1 28 0 239 224 86 0 chr4 194946861 194946919 -7381428 + L3 LINE CR1 1208 1270 -307 275 228 119 50 chr4 194946965 194947066 -7381281 + MIR3 SINE MIR 58 165 -43 180 239 37 110 chr4 194947084 194947152 -7381195 + L3 LINE CR1 1281 1340 -237 1568 154 57 30 chr4 194947152 194947451 -7380896 + AluJo SINE Alu 1 307 -5 180 239 37 110 chr4 194947451 194947491 -7380856 + L3 LINE CR1 1340 1381 -196 2077 122 10 0 chr4 194947565 194947853 -7380494 + AluSx SINE Alu 1 291 -21 2154 106 16 13 chr4 194947853 194948156 -7380191 + AluY SINE Alu 1 304 -7 1496 80 56 14 chr4 194948516 194948729 -7379618 - AluY SINE Alu -89 222 1 2142 127 0 0 chr4 194949652 194949943 -7378404 + AluSq SINE Alu 1 291 -22 274 203 58 29 chr4 194950174 194950243 -7378104 - L2 LINE L2 -1 3312 3242 255 274 123 0 chr4 194952996 194953069 -7375278 + L2 LINE L2 3188 3269 -3 180 0 0 0 chr4 194953613 194953633 -7374714 + (T)n Simple_repeat Simple_repeat 1 20 0 2334 88 0 0 chr4 194954170 194954466 -7373881 + AluSq SINE Alu 1 296 -17 900 146 118 112 chr4 194954696 194955018 -7373329 + MER33 DNA MER1_type 1 324 0 210 216 0 0 chr4 195055741 195055815 -7272532 + (CATTC)n Satellite Satellite 2 75 0 464 169 0 38 chr4 195055893 195056076 -7272271 + (CATTC)n Satellite Satellite 4 179 0 987 154 0 10 chr4 195056094 195056592 -7271755 + (CATTC)n Satellite Satellite 1 493 0 843 152 0 0 chr4 195056628 195056806 -7271541 + (CATTC)n Satellite Satellite 2 179 0 516 209 0 0 chr4 195056825 195057002 -7271345 + (CATTC)n Satellite Satellite 4 180 0 863 169 0 7 chr4 195057020 195057707 -7270640 + (CATTC)n Satellite Satellite 1 681 0 965 180 1 1 chr4 195057728 195058606 -7269741 + (CATTC)n Satellite Satellite 1 878 0 201 245 0 0 chr4 195058616 195058669 -7269678 + (CAGTT)n Simple_repeat Simple_repeat 1 53 0 447 144 0 0 chr4 195058669 195058766 -7269581 + (CATTC)n Satellite Satellite 4 100 0 993 138 6 6 chr4 195058848 195059196 -7269151 + (CATTC)n Satellite Satellite 4 349 0 843 184 1 0 chr4 195059232 195059998 -7268349 + (CATTC)n Satellite Satellite 1 767 0 858 169 0 0 chr4 195060012 195060717 -7267630 + (CATTC)n Satellite Satellite 1 705 0 495 215 0 0 chr4 195060750 195060927 -7267420 + (CATTC)n Satellite Satellite 4 180 0 911 149 0 10 chr4 195060947 195061244 -7267103 + (CATTC)n Satellite Satellite 1 293 0 794 168 4 18 chr4 195061296 195061843 -7266504 + (CATTC)n Satellite Satellite 1 539 0 594 177 0 0 chr4 195061855 195062013 -7266334 + (CATTC)n Satellite Satellite 3 160 0 828 173 0 0 chr4 195062089 195062705 -7265642 + (CATTC)n Satellite Satellite 1 616 0 738 167 0 0 chr4 195062721 195062901 -7265446 + (CATTC)n Satellite Satellite 1 180 0 435 208 0 0 chr4 195062925 195063055 -7265292 + (CATTC)n Satellite Satellite 5 134 0 725 168 6 0 chr4 195063071 195063250 -7265097 + (CATTC)n Satellite Satellite 1 180 0 321 213 0 0 chr4 195063277 195063385 -7264962 + (CATTC)n Satellite Satellite 3 110 0 951 179 0 3 chr4 195063433 195064572 -7263775 + (CATTC)n Satellite Satellite 1 1135 0 852 159 0 0 chr4 195064593 195064769 -7263578 + (CATTC)n Satellite Satellite 4 179 0 579 197 0 0 chr4 195064780 195064958 -7263389 + (CATTC)n Satellite Satellite 1 178 0 828 174 1 4 chr4 195064976 195066167 -7262180 + (CATTC)n Satellite Satellite 1 1187 0 819 188 0 0 chr4 195066191 195066618 -7261729 + (CATTC)n Satellite Satellite 1 427 0 565 159 0 48 chr4 195066632 195066821 -7261526 + (CATTC)n Satellite Satellite 1 180 0 789 185 0 14 chr4 195066842 195067205 -7261142 + (CATTC)n Satellite Satellite 1 358 0 765 168 0 0 chr4 195067241 195067420 -7260927 + (CATTC)n Satellite Satellite 1 179 0 750 172 0 0 chr4 195067454 195067670 -7260677 + (CATTC)n Satellite Satellite 1 216 0 768 184 0 7 chr4 195067704 195068149 -7260198 + (CATTC)n Satellite Satellite 1 441 0 794 172 2 0 chr4 195068184 195068711 -7259636 + (CATTC)n Satellite Satellite 1 528 0 1017 118 0 0 chr4 195068793 195069032 -7259315 + (CATTC)n Satellite Satellite 1 239 0 708 176 0 0 chr4 195069069 195069315 -7259032 + (CATTC)n Satellite Satellite 1 246 0 933 134 0 0 chr4 195069326 195069498 -7258849 + (CATTC)n Satellite Satellite 4 175 0 538 158 0 53 chr4 195069548 195069738 -7258609 + (CATTC)n Satellite Satellite 1 180 0 807 187 4 4 chr4 195069750 195070018 -7258329 + (CATTC)n Satellite Satellite 1 268 0 804 167 0 0 chr4 195070111 195070423 -7257924 + (CATTC)n Satellite Satellite 1 312 0 765 172 0 0 chr4 195070438 195070618 -7257729 + (CATTC)n Satellite Satellite 1 180 0 901 163 2 2 chr4 195070653 195071228 -7257119 + (CATTC)n Satellite Satellite 1 575 0 632 196 5 0 chr4 195071239 195071634 -7256713 + (CATTC)n Satellite Satellite 1 397 0 827 147 6 0 chr4 195071657 195071834 -7256513 + (CATTC)n Satellite Satellite 2 179 0 999 171 0 2 chr4 195071883 195072507 -7255840 + (CATTC)n Satellite Satellite 1 623 0 1005 167 0 10 chr4 195072523 195073319 -7255028 + (CATTC)n Satellite Satellite 1 788 0 522 211 0 0 chr4 195073339 195073519 -7254828 + (CATTC)n Satellite Satellite 1 180 0 725 173 4 0 chr4 195073550 195073833 -7254514 + (CATTC)n Satellite Satellite 1 284 0 672 191 0 0 chr4 195073879 195074057 -7254290 + (CATTC)n Satellite Satellite 2 179 0 794 154 0 3 chr4 195074108 195074455 -7253892 + (CATTC)n Satellite Satellite 1 345 0 531 201 0 0 chr4 195074507 195074666 -7253681 + (CATTC)n Satellite Satellite 4 162 0 717 171 0 0 chr4 195074688 195074863 -7253484 + (CATTC)n Satellite Satellite 5 179 0 821 154 0 4 chr4 195074900 195075133 -7253214 + (GAATG)n Satellite Satellite 1 231 0 564 210 0 0 chr4 195075196 195075473 -7252874 + (GAATG)n Satellite Satellite 1 277 0 841 159 3 3 chr4 195075488 195075828 -7252519 + (GAATG)n Satellite Satellite 1 340 0 671 187 0 14 chr4 195075845 195076208 -7252139 + (GAATG)n Satellite Satellite 1 358 0 594 193 0 0 chr4 195076260 195076436 -7251911 + (GAATG)n Satellite Satellite 4 179 0 366 209 0 0 chr4 195076454 195076583 -7251764 + (GAATG)n Satellite Satellite 2 130 0 837 150 0 0 chr4 195076609 195076789 -7251558 + (GAATG)n Satellite Satellite 1 180 0 762 167 0 0 chr4 195076834 195077014 -7251333 + (GAATG)n Satellite Satellite 1 180 0 654 179 0 0 chr4 195077059 195077232 -7251115 + (GAATG)n Satellite Satellite 3 175 0 756 167 0 0 chr4 195077269 195077499 -7250848 + (GAATG)n Satellite Satellite 1 230 0 430 215 6 6 chr4 195077524 195077701 -7250646 + (GAATG)n Satellite Satellite 4 180 0 867 176 0 0 chr4 195077719 195078251 -7250096 + (GAATG)n Satellite Satellite 1 532 0 693 176 0 0 chr4 195078285 195078461 -7249886 + (GAATG)n Satellite Satellite 4 179 0 963 155 1 3 chr4 195078482 195079448 -7248899 + (GAATG)n Satellite Satellite 2 1142 0 939 154 2 2 chr4 195079475 195079825 -7248522 + (GAATG)n Satellite Satellite 1 528 0 569 194 6 0 chr4 195079844 195080019 -7248328 + (GAATG)n Satellite Satellite 4 179 0 936 179 0 0 chr4 195080037 195080510 -7247837 + (GAATG)n Satellite Satellite 1 473 0 440 180 8 0 chr4 195080532 195080654 -7247693 + (GAATG)n Satellite Satellite 3 125 0 890 169 3 0 chr4 195080699 195081011 -7247336 + (GAATG)n Satellite Satellite 1 313 0 723 146 0 0 chr4 195081031 195081189 -7247158 + (GAATG)n Satellite Satellite 2 159 0 861 144 0 0 chr4 195081204 195081378 -7246969 + (GAATG)n Satellite Satellite 3 176 0 909 163 2 0 chr4 195081416 195081956 -7246391 + (GAATG)n Satellite Satellite 1 541 0 459 221 0 0 chr4 195082004 195082251 -7246096 + (GAATG)n Satellite Satellite 1 247 0 972 139 0 0 chr4 195082294 195082466 -7245881 + (GAATG)n Satellite Satellite 4 175 0 897 160 0 6 chr4 195082535 195083065 -7245282 + (GAATG)n Satellite Satellite 4 703 0 912 162 0 3 chr4 195083104 195083454 -7244893 + (GAATG)n Satellite Satellite 1 348 0 939 170 3 0 chr4 195083471 195084070 -7244277 + (GAATG)n Satellite Satellite 1 601 0 798 166 0 0 chr4 195084108 195084634 -7243713 + (GAATG)n Satellite Satellite 1 526 0 455 206 7 0 chr4 195084654 195084809 -7243538 + (GAATG)n Satellite Satellite 4 159 0 810 167 2 2 chr4 195084862 195085267 -7243080 + (GAATG)n Satellite Satellite 1 405 0 960 139 2 7 chr4 195085280 195085634 -7242713 + (GAATG)n Satellite Satellite 3 527 0 315 209 0 0 chr4 195085667 195085777 -7242570 + (GAATG)n Satellite Satellite 1 110 0 822 148 0 0 chr4 195085823 195085999 -7242348 + (GAATG)n Satellite Satellite 4 179 0 965 174 2 1 chr4 195086011 195086701 -7241646 + (GAATG)n Satellite Satellite 1 870 0 849 145 0 0 chr4 195086717 195086896 -7241451 + (GAATG)n Satellite Satellite 1 179 0 717 193 0 0 chr4 195086925 195087285 -7241062 + (GAATG)n Satellite Satellite 1 360 0 908 129 6 0 chr4 195087301 195087471 -7240876 + (GAATG)n Satellite Satellite 4 174 0 822 172 0 0 chr4 195087538 195087848 -7240499 + (GAATG)n Satellite Satellite 1 310 0 822 167 0 0 chr4 195087869 195088344 -7240003 + (GAATG)n Satellite Satellite 1 475 0 477 222 0 0 chr4 195088365 195088541 -7239806 + (GAATG)n Satellite Satellite 4 179 0 753 157 0 0 chr4 195088565 195088737 -7239610 + (GAATG)n Satellite Satellite 3 174 0 292 126 44 52 chr4 195088740 195088875 -7239472 - HSATII Satellite Satellite -18 152 19 * 692 164 6 0 chr4 195088850 195089027 -7239320 + (GAATG)n Satellite Satellite 2 179 0 840 191 0 0 chr4 195089038 195089864 -7238483 + (GAATG)n Satellite Satellite 1 826 0 963 164 0 9 chr4 195089879 195090542 -7237805 + (GAATG)n Satellite Satellite 2 828 0 744 176 0 0 chr4 195090584 195090997 -7237350 + (GAATG)n Satellite Satellite 1 413 0 593 167 0 22 chr4 195091018 195091198 -7237149 + (GAATG)n Satellite Satellite 5 180 0 390 167 0 0 chr4 195091256 195091340 -7237007 + (GAATG)n Satellite Satellite 3 86 0 858 148 0 0 chr4 195091360 195091536 -7236811 + (GAATG)n Satellite Satellite 2 177 0 840 185 0 2 chr4 195091556 195092767 -7235580 + (GAATG)n Satellite Satellite 1 1208 0 819 178 3 0 chr4 195092781 195093123 -7235224 + (GAATG)n Satellite Satellite 1 343 0 636 191 0 0 chr4 195093139 195093317 -7235030 + (GAATG)n Satellite Satellite 2 179 0 715 142 0 33 chr4 195093333 195093516 -7234831 + (GAATG)n Satellite Satellite 4 180 0 945 169 0 0 chr4 195093564 195093929 -7234418 + (GAATG)n Satellite Satellite 1 365 0 864 157 0 0 chr4 195093994 195094224 -7234123 + (GAATG)n Satellite Satellite 1 230 0 1017 148 1 7 chr4 195094238 195094564 -7233783 + (GAATG)n Satellite Satellite 1 500 0 1017 118 0 0 chr4 195094564 195094742 -7233605 + (GAATG)n Satellite Satellite 3 180 0 387 186 0 0 chr4 195094984 195095086 -7233261 + (GAATG)n Satellite Satellite 4 105 0 645 175 0 0 chr4 195095105 195095276 -7233071 + (GAATG)n Satellite Satellite 4 174 0 858 181 1 1 chr4 195095314 195096078 -7232269 + (GAATG)n Satellite Satellite 1 798 0 198 118 0 0 chr4 195096078 195096112 -7232235 + (GAATG)n Satellite Satellite 3 36 0 876 170 0 0 chr4 195096124 195097152 -7231195 + (GAATG)n Satellite Satellite 1 1028 0 766 177 0 7 chr4 195097163 195097618 -7230729 + (GAATG)n Satellite Satellite 1 451 0 807 165 0 0 chr4 195097651 195098130 -7230217 + (GAATG)n Satellite Satellite 1 479 0 769 153 6 6 chr4 195098141 195098318 -7230029 + (GAATG)n Satellite Satellite 4 180 0 725 195 5 0 chr4 195098339 195098708 -7229639 + (GAATG)n Satellite Satellite 1 371 0 414 225 0 0 chr4 195098719 195098892 -7229455 + (GAATG)n Satellite Satellite 3 175 0 756 174 7 0 chr4 195098908 195099185 -7229162 + (GAATG)n Satellite Satellite 1 279 0 969 173 2 0 chr4 195099196 195099830 -7228517 + (GAATG)n Satellite Satellite 1 635 0 900 156 3 3 chr4 195099886 195100224 -7228123 + (GAATG)n Satellite Satellite 1 338 0 789 146 0 0 chr4 195100241 195100447 -7227900 + (GAATG)n Satellite Satellite 1 206 0 915 160 0 0 chr4 195100465 195100765 -7227582 + (GAATG)n Satellite Satellite 1 300 0 852 156 0 0 chr4 195100790 195100970 -7227377 + (GAATG)n Satellite Satellite 1 180 0 1044 148 3 1 chr4 195100990 195101623 -7226724 + (GAATG)n Satellite Satellite 1 814 0 801 202 0 0 chr4 195101639 195102357 -7225990 + (GAATG)n Satellite Satellite 1 718 0 390 121 0 0 chr4 195102370 195102436 -7225911 + (GAATG)n Satellite Satellite 3 68 0 1002 150 2 1 chr4 195102473 195103191 -7225156 + (GAATG)n Satellite Satellite 1 899 0 474 216 0 0 chr4 195103202 195103373 -7224974 + (GAATG)n Satellite Satellite 4 174 0 897 139 0 0 chr4 195103392 195103565 -7224782 + (GAATG)n Satellite Satellite 2 174 0 939 139 0 0 chr4 195103586 195103766 -7224581 + (GAATG)n Satellite Satellite 1 180 0 799 148 4 14 chr4 195103816 195104111 -7224236 + (GAATG)n Satellite Satellite 1 292 0 570 202 0 0 chr4 195104177 195104350 -7223997 + (GAATG)n Satellite Satellite 1 173 0 1056 168 0 0 chr4 195104375 195105077 -7223270 + (GAATG)n Satellite Satellite 1 702 0 723 169 0 0 chr4 195105114 195105286 -7223061 + (GAATG)n Satellite Satellite 4 175 0 855 156 0 0 chr4 195105319 195105498 -7222849 + (GAATG)n Satellite Satellite 2 180 0 390 161 0 0 chr4 195105515 195105608 -7222739 + (GAATG)n Satellite Satellite 2 94 0 648 177 0 0 chr4 195105632 195105807 -7222540 + (GAATG)n Satellite Satellite 3 177 0 894 182 2 0 chr4 195105834 195106341 -7222006 + (GAATG)n Satellite Satellite 1 508 0 783 144 0 0 chr4 195106368 195106535 -7221812 + (GAATG)n Satellite Satellite 4 170 0 753 167 0 0 chr4 195106566 195106740 -7221607 + (GAATG)n Satellite Satellite 4 177 0 876 135 0 0 chr4 195106773 195106995 -7221352 + (GAATG)n Satellite Satellite 1 222 0 720 168 0 0 chr4 195107078 195107251 -7221096 + (GAATG)n Satellite Satellite 3 175 0 375 145 0 0 chr4 195107262 195107345 -7221002 + (GAATG)n Satellite Satellite 4 86 0 948 150 0 0 chr4 195107368 195107732 -7220615 + (GAATG)n Satellite Satellite 1 364 0 942 130 0 0 chr4 195107774 195107951 -7220396 + (GAATG)n Satellite Satellite 3 179 0 812 151 6 0 chr4 195107978 195108157 -7220190 + (GAATG)n Satellite Satellite 1 180 0 936 128 0 0 chr4 195108207 195108386 -7219961 + (GAATG)n Satellite Satellite 1 179 0 885 171 0 0 chr4 195108406 195108879 -7219468 + (GAATG)n Satellite Satellite 1 473 0 1053 110 0 0 chr4 195108921 195109276 -7219071 + (GAATG)n Satellite Satellite 1 355 0 720 171 0 0 chr4 195109296 195109695 -7218652 + (GAATG)n Satellite Satellite 1 399 0 774 175 4 0 chr4 195109708 195110254 -7218093 + (GAATG)n Satellite Satellite 1 548 0 350 160 0 11 chr4 195110336 195110430 -7217917 + (GAATG)n Satellite Satellite 2 94 0 858 157 2 0 chr4 195110471 195111005 -7217342 + (GAATG)n Satellite Satellite 1 535 0 924 153 0 5 chr4 195111086 195111876 -7216471 + (GAATG)n Satellite Satellite 3 961 0 25 0 0 0 chr4 195112072 195112097 -7216250 + AT_rich Low_complexity Low_complexity 1 25 0 551 376 103 19 chr4 195112644 195113577 -7214770 + L2 LINE L2 2069 3086 -186 245 211 0 0 chr4 195113693 195113750 -7214597 + AluJ/monomer SINE Alu 234 290 -10 191 271 135 73 chr4 195113751 195113847 -7214500 - MER5B DNA MER1_type -54 124 23 254 250 191 24 chr4 195113879 195113963 -7214384 + MER5A DNA MER1_type 9 106 -83 25 0 0 0 chr4 195113963 195113988 -7214359 + AT_rich Low_complexity Low_complexity 1 25 0 2027 153 3 0 chr4 195114082 195114383 -7213964 - AluSx SINE Alu -10 302 1 4438 120 61 7 chr4 195114513 195115256 -7213091 - L1MA5A LINE L1 -4 6293 5511 489 177 97 26 chr4 195115256 195115369 -7212978 + AluSg/x SINE Alu 167 287 -23 6080 168 25 5 chr4 195115371 195116738 -7211609 - L1MA5A LINE L1 -743 5403 4126 1680 171 0 14 chr4 195116981 195117273 -7211074 + AluJb SINE Alu 1 288 -24 1678 69 0 5 chr4 195117352 195117569 -7210778 + L1PA7 LINE L1 5931 6146 -8 22 35 0 0 chr4 195117831 195117860 -7210487 + AT_rich Low_complexity Low_complexity 1 29 0 520 258 43 16 chr4 195117999 195118185 -7210162 + L1M4 LINE L1 4834 5024 -1122 667 208 50 31 chr4 195118188 195118347 -7210000 + AluJo SINE Alu 126 287 -25 924 222 33 62 chr4 195118368 195118674 -7209673 + L1M4 LINE L1 5032 5328 -818 272 169 51 0 chr4 195118670 195118729 -7209618 + L1MD2 LINE L1 6275 6336 -23 * 413 268 58 62 chr4 195120318 195120542 -7207805 + HAL1b LINE L1 693 915 -433 330 280 57 57 chr4 195120740 195120951 -7207396 + L1MEc LINE L1 2136 2346 -4050 34 65 0 0 chr4 195122026 195122088 -7206259 + AT_rich Low_complexity Low_complexity 1 62 0 824 222 0 0 chr4 195122092 195122254 -7206093 - AluJb SINE Alu -14 298 137 38 0 0 0 chr4 195122370 195122408 -7205939 + AT_rich Low_complexity Low_complexity 1 38 0 1265 167 21 38 chr4 195122725 195123012 -7205335 + L1MA4 LINE L1 4776 5057 -1089 1518 95 0 38 chr4 195123012 195123223 -7205124 + AluY SINE Alu 1 203 -108 1396 169 21 4 chr4 195123243 195123522 -7204825 + L1MA4 LINE L1 5042 5325 -821 655 188 0 75 chr4 195123522 195123549 -7204798 + FRAM SINE Alu 33 60 -252 2461 55 7 7 chr4 195123549 195123857 -7204490 - AluY SINE Alu -1 310 3 655 188 0 75 chr4 195123857 195123962 -7204385 + FRAM SINE Alu 60 155 -21 3792 175 4 39 chr4 195123962 195124723 -7203624 + L1MA4 LINE L1 5289 6022 -278 1415 256 109 56 chr4 195124868 195125462 -7202885 - MLT1E2 LTR MaLR 0 626 1 309 307 25 74 chr4 195125674 195125837 -7202510 - L2 LINE L2 -1 3312 3158 2342 66 20 0 chr4 195126318 195126623 -7201724 + AluY SINE Alu 1 311 0 1921 216 55 23 chr4 195126816 195127008 -7201339 - L1ME LINE L1 -370 5796 5612 2303 81 3 0 chr4 195127008 195127303 -7201044 - AluY SINE Alu -15 296 1 1921 216 55 23 chr4 195127303 195127710 -7200637 - L1ME LINE L1 -554 5612 5176 2109 84 50 3 chr4 195127718 195128015 -7200332 - AluYa5 SINE Alu 0 311 1 227 219 12 12 chr4 195128042 195128124 -7200223 + T-rich Low_complexity Low_complexity 1 82 0 724 219 119 30 chr4 195128241 195128544 -7199803 - LTR48 LTR ERV1 -1 786 409 22 56 0 0 chr4 195128572 195128608 -7199739 + AT_rich Low_complexity Low_complexity 1 36 0 1490 207 3 25 chr4 195128646 195128960 -7199387 - AluJb SINE Alu -5 307 1 24 0 0 0 chr4 195129042 195129066 -7199281 + AT_rich Low_complexity Low_complexity 1 24 0 607 256 0 8 chr4 195129076 195129197 -7199150 - FLAM_A SINE Alu -13 120 1 342 115 0 0 chr4 195129369 195129421 -7198926 + (CA)n Simple_repeat Simple_repeat 1 52 0 25 0 0 0 chr4 195129572 195129597 -7198750 + AT_rich Low_complexity Low_complexity 1 25 0 384 244 41 0 chr4 195129801 195129924 -7198423 - MER115 DNA AcHobo -8 685 558 341 262 33 49 chr4 195129965 195130087 -7198260 - MER115 DNA AcHobo -114 579 460 700 164 185 0 chr4 195130829 195130975 -7197372 - MSTA LTR MaLR 0 428 256 261 0 0 0 chr4 195130975 195131004 -7197343 + (A)n Simple_repeat Simple_repeat 1 29 0 381 174 294 0 chr4 195131861 195131953 -7196394 - MSTA LTR MaLR -24 404 286 266 264 92 11 chr4 195132052 195132139 -7196208 - MLT1L LTR MaLR -417 198 105 548 84 12 0 chr4 195132189 195132272 -7196075 + (TTCC)n Simple_repeat Simple_repeat 2 85 0 1611 175 36 23 chr4 195132282 195132590 -7195757 - AluJb SINE Alu 0 312 1 216 0 0 0 chr4 195132632 195132656 -7195691 + (TG)n Simple_repeat Simple_repeat 2 25 0 189 115 33 16 chr4 195133568 195133629 -7194718 + (TA)n Simple_repeat Simple_repeat 1 62 0 329 239 54 0 chr4 195133630 195133722 -7194625 - L1MC4 LINE L1 -1338 6704 6608 2167 110 13 0 chr4 195133897 195134196 -7194151 + AluSq SINE Alu 1 303 -10 1069 291 42 2 chr4 195134454 195134883 -7193464 + L1ME4a LINE L1 5256 5701 -469 319 85 0 0 chr4 195134892 195134939 -7193408 + FRAM/FAM SINE Alu 42 88 -78 917 181 0 44 chr4 195134941 195135123 -7193224 - AluJo SINE Alu -138 174 1 320 189 14 40 chr4 195136794 195136868 -7191479 - L2 LINE L2 -1 3312 3241 493 274 101 42 chr4 195136921 195137329 -7191018 + L1ME4a LINE L1 5690 6121 0 1465 194 102 9 chr4 195137586 195137901 -7190446 + MER2 DNA MER2_type 1 344 -1 243 290 121 32 chr4 195138611 195138735 -7189612 + L2 LINE L2 3173 3307 -6 2149 133 0 3 chr4 195139348 195139657 -7188690 + AluSq SINE Alu 1 308 -5 851 248 25 29 chr4 195140577 195140851 -7187496 - MER34C LTR ERV1 -158 427 155 6170 43 0 1 chr4 195141642 195142390 -7185957 + L1PA5 LINE L1 5408 6154 0 243 319 22 0 chr4 195143146 195143237 -7185110 - L2 LINE L2 -5 3308 3216 24 77 0 0 chr4 195144748 195144800 -7183547 + AT_rich Low_complexity Low_complexity 1 52 0 1669 177 10 27 chr4 195145272 195145572 -7182775 - AluSp SINE Alu -18 295 1 2003 150 0 0 chr4 195145942 195146235 -7182112 + AluSx SINE Alu 1 293 -19 201 343 0 0 chr4 195146407 195146477 -7181870 - MIR SINE MIR -8 254 185 3277 188 3 14 chr4 195146795 195147454 -7180893 - L1MA5 LINE L1 -7 6293 5642 2710 211 30 24 chr4 195147456 195148166 -7180181 + L1 LINE L1 3884 4597 -1549 27 29 0 0 chr4 195148806 195148840 -7179507 + AT_rich Low_complexity Low_complexity 1 34 0 447 108 83 8 chr4 195148893 195149013 -7179334 + (CATCT)n Simple_repeat Simple_repeat 5 133 0 * 630 94 39 55 chr4 195148994 195149175 -7179172 + (CATTT)n Simple_repeat Simple_repeat 1 178 0 661 134 49 6 chr4 195149208 195149372 -7178975 + (CATTT)n Simple_repeat Simple_repeat 5 175 0 653 67 85 24 chr4 195149423 195149587 -7178760 + (CATTT)n Simple_repeat Simple_repeat 5 178 0 666 81 69 29 chr4 195149615 195149788 -7178559 + (CATTT)n Simple_repeat Simple_repeat 1 180 0 258 123 105 0 chr4 195149795 195149852 -7178495 + (CATCT)n Simple_repeat Simple_repeat 5 67 0 838 79 88 9 chr4 195149852 195150174 -7178173 + (CATTT)n Simple_repeat Simple_repeat 1 347 0 222 95 63 32 chr4 195150181 195150244 -7178103 + (CATCT)n Simple_repeat Simple_repeat 5 69 0 679 136 59 0 chr4 195150256 195150425 -7177922 + (CATCT)n Simple_repeat Simple_repeat 1 179 0 505 120 84 18 chr4 195150430 195150597 -7177750 + (CATTT)n Simple_repeat Simple_repeat 1 178 0 946 91 69 15 chr4 195150609 195150998 -7177349 + (CATTT)n Simple_repeat Simple_repeat 1 409 0 609 105 70 35 chr4 195151019 195151191 -7177156 + (CATTT)n Simple_repeat Simple_repeat 1 178 0 312 129 88 47 chr4 195151204 195151375 -7176972 + (CATTT)n Simple_repeat Simple_repeat 1 178 0 1527 196 52 0 chr4 195151473 195151843 -7176504 - AluJo SINE Alu 0 385 1 378 0 0 0 chr4 195151843 195151885 -7176462 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 664 209 26 0 chr4 195151886 195152001 -7176346 - FLAM_C SINE Alu -15 118 1 22 56 0 0 chr4 195152001 195152037 -7176310 + AT_rich Low_complexity Low_complexity 1 36 0 241 336 44 0 chr4 195152431 195152568 -7175779 + (CTAGGG)n Simple_repeat Simple_repeat 6 148 0 266 118 0 85 chr4 195152573 195152726 -7175621 + (CAGGG)n Simple_repeat Simple_repeat 1 140 0 207 127 0 82 chr4 195152855 195152965 -7175382 + (CAGGG)n Simple_repeat Simple_repeat 1 101 0 283 279 54 8 chr4 195153106 195153235 -7175112 + (CTAGGG)n Simple_repeat Simple_repeat 2 136 0 225 189 0 53 chr4 195153243 195153375 -7174972 + (CAGGG)n Simple_repeat Simple_repeat 2 126 0 268 122 0 73 chr4 195153546 195153669 -7174678 + (CAGGG)n Simple_repeat Simple_repeat 1 114 0 204 111 0 0 chr4 195153935 195153971 -7174376 + (CAGGG)n Simple_repeat Simple_repeat 1 36 0 229 215 0 74 chr4 195153993 195154114 -7174233 + (CAGGG)n Simple_repeat Simple_repeat 1 112 0 202 224 66 0 chr4 195154123 195154199 -7174148 + (CCCTAG)n Simple_repeat Simple_repeat 3 83 0 785 126 0 17 chr4 195154253 195154372 -7173975 - AluSq/x SINE Alu -179 133 17 356 213 32 11 chr4 195154374 195154468 -7173879 + MIR SINE MIR 92 187 -75 338 285 44 0 chr4 195154687 195154824 -7173523 + (CCCTAG)n Simple_repeat Simple_repeat 5 147 0 339 241 72 6 chr4 195155037 195155203 -7173144 + (CTAGGG)n Simple_repeat Simple_repeat 2 178 0 229 152 0 54 chr4 195155276 195155368 -7172979 + (CAGGG)n Simple_repeat Simple_repeat 5 91 0 383 281 53 6 chr4 195155373 195155544 -7172803 + (CTAGGG)n Simple_repeat Simple_repeat 2 180 0 331 278 53 6 chr4 195155588 195155892 -7172455 + (CTAGGG)n Simple_repeat Simple_repeat 1 318 0 352 265 28 44 chr4 195155927 195156108 -7172239 + (CTAGGG)n Simple_repeat Simple_repeat 1 178 0 215 162 0 78 chr4 195156114 195156268 -7172079 + (CAGGG)n Simple_repeat Simple_repeat 1 142 0 314 279 39 8 chr4 195156283 195156412 -7171935 + (CTAGGG)n Simple_repeat Simple_repeat 6 138 0 401 264 50 0 chr4 195156423 195156582 -7171765 + (CTAGGG)n Simple_repeat Simple_repeat 6 172 0 * 409 165 5 88 chr4 195156522 195156716 -7171631 + (CAGGG)n Simple_repeat Simple_repeat 2 179 0 334 254 48 24 chr4 195156755 195156920 -7171427 + (CTAGGG)n Simple_repeat Simple_repeat 1 169 0 * 396 142 0 123 chr4 195156867 195157071 -7171276 + (CAGGG)n Simple_repeat Simple_repeat 1 179 0 * 423 262 43 0 chr4 195156949 195157113 -7171234 + (CTAGGG)n Simple_repeat Simple_repeat 2 172 0 234 129 0 43 chr4 195157114 195157184 -7171163 + (CAGGG)n Simple_repeat Simple_repeat 1 67 0 224 245 78 0 chr4 195157228 195157330 -7171017 + (CTAGGG)n Simple_repeat Simple_repeat 1 110 0 190 111 0 44 chr4 195157355 195157400 -7170947 + (CAGGG)n Simple_repeat Simple_repeat 3 45 0 420 257 53 0 chr4 195157456 195157608 -7170739 + (CTAGGG)n Simple_repeat Simple_repeat 1 160 0 371 183 0 91 chr4 195157570 195157767 -7170580 + (CAGGG)n Simple_repeat Simple_repeat 1 179 0 * 190 143 41 0 chr4 195157828 195157877 -7170470 + (CTAGGG)n Simple_repeat Simple_repeat 2 52 0 385 213 4 77 chr4 195157885 195158348 -7169999 + (CAGGG)n Simple_repeat Simple_repeat 1 429 0 739 279 70 26 chr4 195159173 195159526 -7168821 - HSREP522 Satellite telomeric -171 368 1 4404 217 64 12 chr4 195159658 195160847 -7167500 + L1MB7 LINE L1 2785 4035 -2111 598 118 0 0 chr4 195160853 195160938 -7167409 + AluJb SINE Alu 210 294 -18 942 165 0 30 chr4 195160969 195161133 -7167214 + AluJo SINE Alu 6 164 -148 2384 193 35 46 chr4 195161134 195161726 -7166621 + L1MB7 LINE L1 5599 6184 0 23 33 0 0 chr4 195161869 195161899 -7166448 + AT_rich Low_complexity Low_complexity 1 30 0 552 222 0 48 chr4 195161899 195162025 -7166322 + FLAM_A SINE Alu 2 121 -12 2084 139 0 3 chr4 195162034 195162329 -7166018 + AluSx SINE Alu 1 294 -18 804 115 0 0 chr4 195162329 195162451 -7165896 + (TA)n Simple_repeat Simple_repeat 2 123 0 1749 136 45 17 chr4 195162605 195162892 -7165455 + AluSx SINE Alu 1 295 -17 2077 146 0 3 chr4 195162895 195163204 -7165143 + AluSx SINE Alu 1 308 -4 1240 192 35 52 chr4 195163475 195163762 -7164585 - AluJo SINE Alu -30 282 1 258 333 54 0 chr4 195163963 195164056 -7164291 - L2 LINE L2 -9 3263 3166 210 136 0 0 chr4 195164621 195164665 -7163682 + (CA)n Simple_repeat Simple_repeat 2 45 0 2280 71 20 0 chr4 195165521 195165815 -7162532 - AluY SINE Alu -11 300 1 214 355 18 36 chr4 195165923 195166089 -7162258 + MIR SINE MIR 12 174 -88 2495 122 92 24 chr4 195166121 195166589 -7161758 - Tigger3b DNA MER2_type -3 1229 730 1960 110 0 4 chr4 195166607 195166870 -7161477 + AluSq SINE Alu 2 263 -50 2083 161 77 15 chr4 195166872 195167027 -7161320 - Tigger3b DNA MER2_type -2598 430 286 1931 157 0 0 chr4 195167027 195167320 -7161027 + AluSx SINE Alu 1 293 -19 2083 161 77 15 chr4 195167320 195167569 -7160778 - Tigger3b DNA MER2_type -2742 286 1 207 0 0 0 chr4 195167901 195167924 -7160423 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 19464 38 1 0 chr4 195167924 195171031 -7157316 - L1PA3 LINE L1 -5 6150 3042 2254 112 0 7 chr4 195171032 195171327 -7157020 - AluSg SINE Alu -17 293 1 1070 266 141 33 chr4 195171417 195171872 -7156475 - MLT1K LTR MaLR -84 504 1 303 311 28 0 chr4 195172225 195172331 -7156016 - MIR SINE MIR -97 165 57 2049 135 17 0 chr4 195172527 195172816 -7155531 - AluSx SINE Alu -18 294 1 2036 191 55 41 chr4 195172943 195173208 -7155139 - MLT1D LTR MaLR -3 502 242 2042 162 61 8 chr4 195173208 195173584 -7154763 + MSTD LTR MaLR 1 396 0 2036 191 55 41 chr4 195173584 195173646 -7154701 - MLT1D LTR MaLR -263 242 182 2098 110 13 10 chr4 195173646 195173945 -7154402 + AluSq SINE Alu 1 300 -13 2036 191 55 41 chr4 195173945 195174109 -7154238 - MLT1D LTR MaLR -323 182 3 2183 125 6 6 chr4 195174164 195174475 -7153872 + AluSq SINE Alu 1 311 -2 296 290 40 30 chr4 195174855 195174955 -7153392 + MIR SINE MIR 19 119 -89 643 277 62 55 chr4 195175042 195175331 -7153016 + MER46C DNA MER2_type 48 338 0 1923 149 0 29 chr4 195175619 195175928 -7152419 + AluSx SINE Alu 1 300 -12 1925 170 0 0 chr4 195176477 195176771 -7151576 + AluSx SINE Alu 1 294 -18 1555 164 32 43 chr4 195178275 195178413 -7149934 + AluJo SINE Alu 1 139 -173 2303 109 3 0 chr4 195178413 195178717 -7149630 + AluSx SINE Alu 1 305 -7 1555 164 32 43 chr4 195178717 195178859 -7149488 + AluJo SINE Alu 139 278 -34 313 202 24 24 chr4 195178859 195178983 -7149364 + GA-rich Low_complexity Low_complexity 4 127 0 425 125 0 16 chr4 195178983 195179047 -7149300 + AluJ/FLAM SINE Alu 3 65 -247 2080 148 3 0 chr4 195179256 195179561 -7148786 + AluSq SINE Alu 1 306 -7 834 225 0 0 chr4 195179603 195179776 -7148571 + FRAM SINE Alu 1 167 -9 1887 164 56 19 chr4 195180775 195181134 -7147213 + THE1C LTR MaLR 1 372 -3 1477 137 0 0 chr4 195181708 195181920 -7146427 + AluSg/x SINE Alu 85 296 -14 325 307 78 50 chr4 195182794 195183113 -7145234 + L2 LINE L2 1915 2242 -1072 1753 115 11 27 chr4 195183123 195183384 -7144963 + AluSx SINE Alu 1 257 -55 423 0 0 0 chr4 195183388 195183435 -7144912 + (TA)n Simple_repeat Simple_repeat 1 47 0 1472 194 10 38 chr4 195183683 195183997 -7144350 + AluJo SINE Alu 1 305 -7 1401 287 118 29 chr4 195184025 195184730 -7143617 - L1M4 LINE L1 -2323 3823 3182 2181 125 0 3 chr4 195184730 195185033 -7143314 - AluSx SINE Alu -6 306 5 1401 287 118 29 chr4 195185033 195185900 -7142447 - L1M4 LINE L1 -2964 3182 2111 715 259 22 13 chr4 195186202 195186426 -7141921 - L1ME1 LINE L1 -5 6161 5936 1192 128 45 0 chr4 195186447 195186626 -7141721 + AluSx SINE Alu 1 187 -125 16712 74 1 5 chr4 195186632 195188869 -7139478 - L1P LINE L1 -2287 3859 1630 15642 45 42 0 chr4 195188869 195190835 -7137512 + L1P LINE L1 3055 5103 -1043 8600 146 57 22 chr4 195190832 195192312 -7136035 - L1P LINE L1 -4605 1541 11 * 2709 217 63 13 chr4 195192322 195193086 -7135261 - L1M4 LINE L1 -944 5700 4899 1869 196 90 17 chr4 195193088 195193501 -7134846 + MSTB2 LTR MaLR 15 457 0 5214 207 49 109 chr4 195193501 195195258 -7133089 + MSTB2-int LTR MaLR 1 1651 0 1792 167 66 67 chr4 195195281 195195690 -7132657 + MSTB2 LTR MaLR 28 457 0 4005 248 56 29 chr4 195195691 195197106 -7131241 - L1M4 LINE L1 -1741 4903 3451 765 29 10 39 chr4 195199060 195199164 -7129183 + L1PA7 LINE L1 6050 6150 -4 214 100 60 20 chr4 195199240 195199290 -7129057 + GA-rich Low_complexity Low_complexity 4 55 0 1090 93 7 0 chr4 195199850 195199990 -7128357 + AluSp SINE Alu 1 141 -172 778 126 8 0 chr4 195199994 195200113 -7128234 - MSTA LTR MaLR -308 120 1 428 247 0 32 chr4 195200113 195200206 -7128141 - FLAM_A SINE Alu -30 112 23 396 59 0 0 chr4 195200386 195200437 -7127910 + (CA)n Simple_repeat Simple_repeat 2 52 0 2308 234 95 9 chr4 195200439 195201487 -7126860 - L1M4 LINE L1 -4550 2096 953 1841 187 52 16 chr4 195201881 195202245 -7126102 - MER68 LTR ERV1 -70 492 116 1282 14 10 33 chr4 195202284 195202495 -7125852 + (TTTC)n Simple_repeat Simple_repeat 1 206 0 760 95 0 0 chr4 195202517 195202622 -7125725 - L1PA8 LINE L1 -2 6170 6066 2439 107 6 6 chr4 195202896 195203251 -7125096 - THE1A LTR MaLR 0 355 1 226 241 35 35 chr4 195203313 195203400 -7124947 - L1M4 LINE L1 -6382 160 74 388 294 67 52 chr4 195203564 195204386 -7123961 - L1MEd LINE L1 -762 1728 795 563 322 42 42 chr4 195204393 195204671 -7123676 - L1MEd LINE L1 -5464 655 375 2122 129 0 3 chr4 195204671 195205003 -7123344 - AluSq SINE Alu 0 313 1 563 322 42 42 chr4 195205003 195205056 -7123291 - L1MEd LINE L1 -5743 376 324 2284 97 3 10 chr4 195205724 195206035 -7122312 - AluSx SINE Alu -3 309 1 22 35 0 0 chr4 195206677 195206706 -7121641 + AT_rich Low_complexity Low_complexity 1 29 0 2724 148 43 2 chr4 195206755 195207220 -7121127 - L1PA16 LINE L1 -20 6146 5663 748 204 136 9 chr4 195207223 195207353 -7120994 - L1 LINE L1 -2310 3836 3724 279 54 0 0 chr4 195207353 195207390 -7120957 + (TG)n Simple_repeat Simple_repeat 1 37 0 748 204 136 9 chr4 195207390 195207479 -7120868 - L1 LINE L1 -2422 3724 3589 3148 142 25 2 chr4 195207524 195208054 -7120293 + MER6 DNA MER2_type 324 865 0 1495 175 86 0 chr4 195208086 195208355 -7119992 + AluJo SINE Alu 1 292 -20 203 339 188 34 chr4 195208438 195208763 -7119584 + L2 LINE L2 2524 2898 -416 237 162 0 0 chr4 195209215 195209252 -7119095 + Alu SINE Alu 129 165 -138 1174 145 0 5 chr4 195209252 195209438 -7118909 + AluSg/x SINE Alu 126 310 -2 1447 24 0 0 chr4 195209455 195209625 -7118722 + L1PA2 LINE L1 5986 6155 0 24 32 0 0 chr4 195210172 195210203 -7118144 + AT_rich Low_complexity Low_complexity 1 31 0 229 253 11 22 chr4 195210833 195210924 -7117423 + (TA)n Simple_repeat Simple_repeat 1 90 0 25 95 0 0 chr4 195211167 195211241 -7117106 + AT_rich Low_complexity Low_complexity 1 74 0 2741 146 5 0 chr4 195211315 195211761 -7116586 - L1PA15 LINE L1 0 6816 6369 2430 100 3 41 chr4 195211761 195212146 -7116201 - L1PB1 LINE L1 0 6151 5776 270 176 0 0 chr4 195212148 195212199 -7116148 + (TA)n Simple_repeat Simple_repeat 1 51 0 5818 161 23 23 chr4 195212199 195213979 -7114368 - L1PB1 LINE L1 -360 5791 4017 893 158 0 20 chr4 195213979 195214131 -7114216 - AluSg/x SINE Alu 0 310 162 14128 214 30 41 chr4 195214135 195217905 -7110442 - L1PA15 LINE L1 -650 6166 2355 2256 103 3 0 chr4 195217905 195218207 -7110140 - AluSc SINE Alu -6 303 1 14128 214 30 41 chr4 195218207 195218234 -7110113 - L1PA15 LINE L1 -4461 2355 2329 2050 143 0 0 chr4 195218234 195218527 -7109820 + AluSg SINE Alu 1 293 -17 14128 214 30 41 chr4 195218527 195219673 -7108674 - L1PA15 LINE L1 -4487 2329 1287 315 302 48 24 chr4 195219949 195220075 -7108272 - L1MB8 LINE L1 -282 5896 5768 627 261 47 50 chr4 195220158 195220457 -7107890 - L1MB8 LINE L1 -514 5607 5310 338 304 141 48 chr4 195220709 195220819 -7107528 - L1MB8 LINE L1 -990 5156 5058 1427 154 143 0 chr4 195220819 195221078 -7107269 - AluSg SINE Alu -4 296 1 338 304 141 48 chr4 195221078 195221342 -7107005 - L1MB8 LINE L1 -1088 5058 4747 288 209 79 43 chr4 195221384 195221523 -7106824 - L1MB8 LINE L1 -1470 4676 4533 1100 135 0 0 chr4 195221524 195221680 -7106667 + AluSq SINE Alu 1 156 -157 885 204 284 11 chr4 195221850 195222135 -7106212 + MLT1F LTR MaLR 180 542 0 204 205 0 0 chr4 195222136 195222175 -7106172 + MER5B DNA MER1_type 140 178 0 464 233 149 81 chr4 195222175 195222484 -7105863 - LTR16A1 LTR ERVL -127 330 1 360 45 104 0 chr4 195224213 195224280 -7104067 + CT-rich Low_complexity Low_complexity 2 75 0 2260 99 0 10 chr4 195224339 195224642 -7103705 - AluY SINE Alu -11 300 1 35 0 0 22 chr4 195224849 195224879 -7103468 + AT_rich Low_complexity Low_complexity 1 31 -14 1858 116 62 14 chr4 195224879 195225155 -7103192 + AluSx SINE Alu 1 289 -23 35 0 0 22 chr4 195225155 195225170 -7103177 + AT_rich Low_complexity Low_complexity 31 45 0 452 274 171 29 chr4 195225170 195225549 -7102798 - L1ME LINE L1 -406 5715 5283 1957 141 7 3 chr4 195225763 195226061 -7102286 + AluSx SINE Alu 1 299 -13 388 287 49 20 chr4 195226174 195226319 -7102028 - MIR SINE MIR -60 148 3 1911 169 32 46 chr4 195226411 195226975 -7101372 + MLT2A2 LTR ERVL 1 554 0 2255 140 4 0 chr4 195226975 195227343 -7101004 + MLT1F-int LTR MaLR 1 370 -1210 207 0 0 0 chr4 195227346 195227369 -7100978 + (TTG)n Simple_repeat Simple_repeat 2 24 0 13221 63 16 2 chr4 195227369 195229877 -7098470 - L1PA6 LINE L1 -16 6138 3606 37173 95 7 6 chr4 195230023 195236161 -7092186 - L1PA5 LINE L1 -3 6151 11 2586 149 24 82 chr4 195236166 195236675 -7091672 + THE1-int LTR MaLR 347 825 -755 439 162 106 70 chr4 195236686 195236730 -7091617 - L1 LINE L1 -770 5612 5571 1616 204 42 8 chr4 195236730 195237083 -7091264 - MLT1A1 LTR MaLR 0 365 1 439 162 106 70 chr4 195237083 195237180 -7091167 - L1 LINE L1 -811 5571 5466 * 1737 241 76 7 chr4 195237175 195237503 -7090844 - L1 LINE L1 -2634 3748 3444 2131 102 10 3 chr4 195237503 195237807 -7090540 - AluSp SINE Alu -7 306 1 1737 241 76 7 chr4 195237807 195238058 -7090289 - L1 LINE L1 -2938 3444 3129 320 159 0 5 chr4 195238060 195238128 -7090219 - MLT2B3 LTR ERVL 0 515 455 1738 231 25 111 chr4 195238165 195238744 -7089603 - MLT2B3 LTR ERVL -34 501 1 4581 250 62 18 chr4 195238744 195239897 -7088450 - L1 LINE L1 -3251 3131 2030 1733 177 47 7 chr4 195239897 195240197 -7088150 + AluJo SINE Alu 1 312 0 4581 250 62 18 chr4 195240197 195240953 -7087394 - L1 LINE L1 -4352 2030 1244 3032 174 19 74 chr4 195240953 195241684 -7086663 + LTR8 LTR ERV1 1 691 0 4581 250 62 18 chr4 195241684 195242152 -7086195 - L1 LINE L1 -5138 1244 798 362 308 66 24 chr4 195242454 195242665 -7085682 - L1 LINE L1 -5921 392 173 1267 186 102 7 chr4 195242676 195242961 -7085386 - AluJo SINE Alu 0 312 1 30 0 0 0 chr4 195243109 195243139 -7085208 + AT_rich Low_complexity Low_complexity 1 30 0 1882 166 0 0 chr4 195243410 195243705 -7084642 - AluSx SINE Alu -15 297 3 21 57 0 0 chr4 195244920 195244955 -7083392 + AT_rich Low_complexity Low_complexity 1 35 0 38 61 0 0 chr4 195245347 195245413 -7082934 + AT_rich Low_complexity Low_complexity 1 66 0 2121 122 0 25 chr4 195245443 195245764 -7082583 + AluSq SINE Alu 1 313 0 401 265 181 29 chr4 195245876 195245963 -7082384 - L1MC/D LINE L1 -2042 5766 5694 2038 125 0 0 chr4 195245963 195246244 -7082103 - AluSq SINE Alu -11 302 22 401 265 181 29 chr4 195246244 195246275 -7082072 - L1MC/D LINE L1 -2114 5694 5669 682 189 0 16 chr4 195246275 195246402 -7081945 - FLAM_C SINE Alu -7 126 2 401 265 181 29 chr4 195246402 195246520 -7081827 - L1MC/D LINE L1 -2139 5669 5493 572 268 91 86 chr4 195246656 195247063 -7081284 - L1MC/D LINE L1 -778 5368 4960 251 200 17 17 chr4 195247064 195247124 -7081223 + (TA)n Simple_repeat Simple_repeat 1 60 0 238 152 0 0 chr4 195247171 195247217 -7081130 + LTR66 LTR ERVL 394 439 -171 27 29 0 0 chr4 195248488 195248522 -7079825 + AT_rich Low_complexity Low_complexity 1 34 0 1530 193 27 17 chr4 195248556 195248857 -7079490 + AluJo SINE Alu 1 304 -8 31 76 0 0 chr4 195249060 195249126 -7079221 + AT_rich Low_complexity Low_complexity 1 66 0 2004 140 3 0 chr4 195249345 195249631 -7078716 + AluSx SINE Alu 1 287 -25 951 157 0 0 chr4 195250217 195250364 -7077983 + AluSg/x SINE Alu 162 308 -2 1549 213 9 19 chr4 195250386 195250562 -7077785 - AluJb SINE Alu 0 312 139 2355 102 6 10 chr4 195250562 195250875 -7077472 - AluSx SINE Alu 0 312 1 1549 213 9 19 chr4 195250875 195251013 -7077334 - AluJb SINE Alu -173 139 1 1852 151 3 10 chr4 195251213 195251505 -7076842 + AluJb SINE Alu 1 290 -22 294 266 26 97 chr4 195251640 195251753 -7076594 + L2 LINE L2 3138 3242 -30 642 297 52 18 chr4 195251918 195252147 -7076200 + MIR SINE MIR 12 248 -14 23 33 0 0 chr4 195252180 195252210 -7076137 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 195252459 195252480 -7075867 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4 195252540 195252571 -7075776 + AT_rich Low_complexity Low_complexity 1 31 0 347 290 20 0 chr4 195252802 195252902 -7075445 + MIR SINE MIR 147 248 -14 435 330 116 5 chr4 195253499 195253714 -7074633 - MIR SINE MIR -19 243 5 26 0 0 0 chr4 195254542 195254568 -7073779 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr4 195254998 195255029 -7073318 + AT_rich Low_complexity Low_complexity 1 31 0 2304 93 0 0 chr4 195255793 195256082 -7072265 + AluSg SINE Alu 12 300 -10 44 56 0 0 chr4 195256338 195256410 -7071937 + AT_rich Low_complexity Low_complexity 1 72 0 2022 115 14 0 chr4 195256463 195256774 -7071573 + AluY SINE Alu 1 315 0 2372 157 37 10 chr4 195258777 195259178 -7069169 + MER61B LTR ERV1 1 412 -13 429 297 139 8 chr4 195260017 195260276 -7068071 - L1MC4 LINE L1 0 8042 7644 333 238 12 12 chr4 195260311 195260391 -7067956 + Tigger3(Golem) DNA MER2_type 1 80 -2949 2040 121 18 0 chr4 195260529 195260811 -7067536 + AluSx SINE Alu 1 287 -25 254 111 0 0 chr4 195260821 195260857 -7067490 + Tigger3(Golem) DNA MER2_type 2919 2954 -75 233 269 69 36 chr4 195260857 195261003 -7067344 - L1MC4 LINE L1 -315 7727 7587 2168 117 0 3 chr4 195261003 195261302 -7067045 - AluSc SINE Alu -11 298 1 233 269 69 36 chr4 195261302 195261691 -7066656 - L1MC4 LINE L1 -455 7587 7133 3737 140 24 45 chr4 195261694 195262367 -7065980 - L1MC2 LINE L1 -7 6337 5679 327 263 83 0 chr4 195262471 195262596 -7065751 - MIR3 SINE MIR -7 201 63 229 261 11 34 chr4 195262825 195262913 -7065434 - LTR16A1 LTR ERVL -316 141 56 1139 313 23 25 chr4 195263701 195264094 -7064253 - ERVL LTR ERVL -1248 4516 4125 700 286 40 16 chr4 195264140 195264383 -7063964 - ERVL LTR ERVL -1720 4044 3793 2225 100 7 19 chr4 195264383 195264692 -7063655 - AluY SINE Alu -6 305 1 8310 148 27 8 chr4 195264731 195267140 -7061207 - L1MA8 LINE L1 -4 6287 3824 975 341 38 66 chr4 195267237 195267406 -7060941 - ERVL LTR ERVL -2081 3683 3511 1917 144 60 38 chr4 195267406 195267773 -7060574 + THE1C LTR MaLR 1 375 0 975 341 38 66 chr4 195267773 195268284 -7060063 - ERVL LTR ERVL -2253 3511 3022 327 333 33 7 chr4 195268401 195268554 -7059793 - ERVL LTR ERVL -2756 2729 2573 569 279 82 19 chr4 195268554 195268873 -7059474 - L1M4 LINE L1 -3139 3007 2669 318 273 84 13 chr4 195268878 195269032 -7059315 - L1M4 LINE L1 -3547 2599 2435 2206 192 38 26 chr4 195269074 195269575 -7058772 - LTR55 LTR ERV -37 511 5 253 297 0 54 chr4 195269725 195269799 -7058548 + L2 LINE L2 1854 1923 -1391 338 292 205 49 chr4 195270226 195270505 -7057842 - L1 LINE L1 -1313 4833 4474 1316 172 137 0 chr4 195270505 195270650 -7057697 - AluJb SINE Alu -14 298 174 207 0 0 0 chr4 195270650 195270673 -7057674 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1316 172 137 0 chr4 195270673 195270789 -7057558 - AluJb SINE Alu -138 174 1 338 292 205 49 chr4 195270789 195270899 -7057448 - L1 LINE L1 -1672 4474 4383 501 311 102 39 chr4 195271096 195271544 -7056803 - L1 LINE L1 -1998 4148 3633 1841 124 106 0 chr4 195271544 195271819 -7056528 - AluSx SINE Alu -8 304 1 501 311 102 39 chr4 195271819 195272113 -7056234 - L1 LINE L1 -2513 3633 3359 2012 151 3 19 chr4 195272137 195272454 -7055893 - AluSx SINE Alu 0 312 1 1673 168 3 7 chr4 195273097 195273382 -7054965 + AluJo SINE Alu 3 286 -26 1702 163 17 24 chr4 195274597 195274892 -7053455 - AluJb SINE Alu -19 293 1 184 292 14 42 chr4 195276375 195276447 -7051900 + MIR SINE MIR 187 256 -6 539 198 25 66 chr4 195276669 195276790 -7051557 - FLAM_A SINE Alu -17 116 1 986 200 28 90 chr4 195276913 195277168 -7051179 - MER8 DNA MER2_type 0 239 1 21 36 0 0 chr4 195277986 195278014 -7050333 + AT_rich Low_complexity Low_complexity 1 28 0 1819 181 3 13 chr4 195278527 195278842 -7049505 + AluSx SINE Alu 1 312 0 22 0 0 0 chr4 195279163 195279185 -7049162 + AT_rich Low_complexity Low_complexity 1 22 0 1606 249 186 22 chr4 195279524 195279888 -7048459 + TAR1 Satellite telomeric 1 423 -105 9221 183 44 11 chr4 195279890 195283511 -7044836 - L1PBa LINE L1 -1990 4872 989 1056 62 0 0 chr4 195284096 195284224 -7044123 - AluY SINE Alu -183 128 1 207 319 22 33 chr4 195284233 195284324 -7044023 - L2 LINE L2 0 3272 3183 230 319 77 11 chr4 195284654 195284745 -7043602 - L2 LINE L2 -43 3229 3133 405 195 203 0 chr4 195285076 195285194 -7043153 - MLT1B LTR MaLR -71 319 178 2202 119 0 13 chr4 195285484 195285794 -7042553 - AluSq SINE Alu -7 306 1 479 232 38 111 chr4 195285809 195285964 -7042383 - L1M4 LINE L1 -3140 3504 3339 897 112 0 16 chr4 195285964 195286089 -7042258 - FLAM_C SINE Alu -10 123 1 479 232 38 111 chr4 195286089 195286304 -7042043 - L1M4 LINE L1 -3305 3339 3161 1686 170 52 0 chr4 195286338 195286626 -7041721 - AluSx SINE Alu -9 303 1 1841 125 66 0 chr4 195286812 195287099 -7041248 - AluSx SINE Alu -6 306 1 26 30 0 0 chr4 195287110 195287143 -7041204 + AT_rich Low_complexity Low_complexity 1 33 0 182 128 26 0 chr4 195287891 195287930 -7040417 + (CAAT)n Simple_repeat Simple_repeat 3 42 0 413 207 24 35 chr4 195288000 195288100 -7040247 + (TCTA)n Simple_repeat Simple_repeat 3 102 -67 701 223 0 0 chr4 195288100 195288221 -7040126 + FLAM_A SINE Alu 2 122 -11 413 207 24 35 chr4 195288221 195288289 -7040058 + (TCTA)n Simple_repeat Simple_repeat 102 169 0 209 146 21 0 chr4 195288347 195288395 -7039952 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 741 206 261 93 chr4 195288399 195288512 -7039835 - L1MB5 LINE L1 -9 6165 6072 1699 142 21 25 chr4 195288512 195288794 -7039553 + AluJo SINE Alu 1 281 -31 741 206 261 93 chr4 195288794 195289121 -7039226 - L1MB5 LINE L1 -102 6072 5651 972 199 106 88 chr4 195291649 195292026 -7036321 + MLT1B LTR MaLR 7 390 0 808 266 45 86 chr4 195292270 195292713 -7035634 + MLT1J LTR MaLR 80 504 -7 381 230 26 62 chr4 195294026 195294139 -7034208 + MLT1D LTR MaLR 5 113 -392 498 330 47 14 chr4 195295955 195296215 -7032132 - HERVL LTR ERVL -2952 2533 2267 266 307 57 14 chr4 195296551 195296691 -7031656 - HERVL LTR ERVL -5047 607 462 536 323 84 32 chr4 195297492 195297839 -7030508 - L2 LINE L2 -499 2815 2451 297 253 20 14 chr4 195298274 195298420 -7029927 + GA-rich Low_complexity Low_complexity 1 147 0 1459 234 101 26 chr4 195298444 195299136 -7029211 - L1M4 LINE L1 -4994 1548 820 284 339 15 0 chr4 195299317 195299447 -7028900 - L1M4 LINE L1 -5717 929 798 1038 90 0 23 chr4 195299652 195300129 -7028218 + HSATII Satellite Satellite 1 466 -1 1079 89 25 9 chr4 195300143 195301064 -7027283 + HSATII Satellite Satellite 1 935 -29 1170 115 13 10 chr4 195301078 195303542 -7024805 + HSATII Satellite Satellite 1 2473 0 1032 94 20 21 chr4 195303558 195304281 -7024066 + HSATII Satellite Satellite 1 722 -1 1188 94 20 12 chr4 195304330 195305391 -7022956 + HSATII Satellite Satellite 1 1069 -83 926 99 37 0 chr4 195305429 195305800 -7022547 + HSATII Satellite Satellite 1 384 -1 840 128 24 0 chr4 195305823 195306281 -7022066 + HSATII Satellite Satellite 1 469 -79 974 94 6 18 chr4 195306295 195306793 -7021554 + HSATII Satellite Satellite 1 492 -1 1014 107 11 13 chr4 195306823 195308478 -7019869 + HSATII Satellite Satellite 1 1651 0 1134 95 8 6 chr4 195308504 195309032 -7019315 + HSATII Satellite Satellite 1 529 -56 1050 109 4 8 chr4 195309044 195309833 -7018514 + HSATII Satellite Satellite 1 786 -120 254 176 45 28 chr4 195309833 195310009 -7018338 + (ATTCG)n Simple_repeat Simple_repeat 2 180 0 * 1173 105 5 3 chr4 195309975 195311227 -7017120 + HSATII Satellite Satellite 1 1254 0 906 121 17 22 chr4 195311249 195311660 -7016687 + HSATII Satellite Satellite 1 408 0 1101 107 19 15 chr4 195311682 195313041 -7015306 + HSATII Satellite Satellite 1 1364 -75 660 165 0 0 chr4 195313041 195313199 -7015148 + (CATTC)n Satellite Satellite 2 159 0 750 162 0 0 chr4 195313210 195313574 -7014773 + (CATTC)n Satellite Satellite 1 364 0 771 155 0 0 chr4 195313591 195313765 -7014582 + (CATTC)n Satellite Satellite 2 175 0 1137 125 2 4 chr4 195313805 195314709 -7013638 + (CATTC)n Satellite Satellite 1 901 0 845 129 6 0 chr4 195314756 195314927 -7013420 + (CATTC)n Satellite Satellite 3 174 0 801 159 0 0 chr4 195314943 195315198 -7013149 + (CATTC)n Satellite Satellite 1 255 0 987 135 0 26 chr4 195315218 195315593 -7012754 + (CATTC)n Satellite Satellite 1 365 0 1155 114 0 0 chr4 195315606 195315848 -7012499 + (CATTC)n Satellite Satellite 1 242 0 1065 136 3 11 chr4 195315863 195316659 -7011688 + (CATTC)n Satellite Satellite 1 789 0 880 142 5 5 chr4 195316689 195317599 -7010748 + (CATTC)n Satellite Satellite 1 910 0 754 126 0 38 chr4 195317620 195317884 -7010463 + (CATTC)n Satellite Satellite 1 253 0 873 136 0 0 chr4 195317897 195318074 -7010273 + (CATTC)n Satellite Satellite 4 180 0 882 153 1 9 chr4 195318107 195318873 -7009474 + (CATTC)n Satellite Satellite 1 760 0 933 158 0 4 chr4 195318884 195319408 -7008939 + (CATTC)n Satellite Satellite 1 522 0 672 173 0 0 chr4 195319419 195319598 -7008749 + (CATTC)n Satellite Satellite 1 179 0 25 0 0 0 chr4 195419783 195419808 -6908539 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr4 195421314 195421338 -6907009 + AT_rich Low_complexity Low_complexity 1 24 0 267 350 0 25 chr4 195421608 195421728 -6906619 - MIR3 SINE MIR -25 183 67 1358 207 3 7 chr4 195425813 195426117 -6902230 + AluSp SINE Alu 1 303 0 243 0 0 0 chr4 195426126 195426153 -6902194 + (CACAA)n Simple_repeat Simple_repeat 4 30 0 1737 144 16 35 chr4 195426355 195426667 -6901680 - AluSg SINE Alu -2 308 3 758 211 58 0 chr4 195427554 195427710 -6900637 + FRAM SINE Alu 2 166 0 2465 202 24 66 chr4 195427764 195428614 -6899733 - MER4D LTR ERV1 0 903 1 2381 68 0 10 chr4 195430805 195431116 -6897231 - AluY SINE Alu -3 308 1 2166 116 0 0 chr4 195431596 195431898 -6896449 - AluSx SINE Alu -8 304 3 534 272 121 36 chr4 195432457 195432927 -6895420 + MLT1J LTR MaLR 2 511 0 633 91 0 0 chr4 195433286 195433374 -6894973 - AluSc SINE Alu -22 287 200 2676 39 0 0 chr4 195435401 195435706 -6892641 + AluY SINE Alu 1 305 -6 224 275 66 22 chr4 195437471 195437562 -6890785 + MIR SINE MIR 103 197 -65 410 278 127 24 chr4 195439514 195439719 -6888628 - MIR SINE MIR -36 226 1 2164 137 0 3 chr4 195439772 195440085 -6888262 - AluSx SINE Alu 0 312 1 23 55 0 18 chr4 195442262 195442296 -6886051 + AT_rich Low_complexity Low_complexity 1 35 -19 2253 94 0 3 chr4 195442296 195442584 -6885763 + AluSx SINE Alu 1 287 -25 23 55 0 18 chr4 195442584 195442604 -6885743 + AT_rich Low_complexity Low_complexity 35 54 0 296 176 15 0 chr4 195443394 195443462 -6884885 + (TA)n Simple_repeat Simple_repeat 1 69 0 22 0 0 0 chr4 195443731 195443753 -6884594 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr4 195444506 195444534 -6883813 + (A)n Simple_repeat Simple_repeat 1 28 0 2194 99 6 25 chr4 195446146 195446460 -6881887 - AluSg SINE Alu -2 308 1 947 270 116 47 chr4 195449630 195449742 -6878605 + MER20B DNA MER1_type 67 170 -613 1756 164 48 10 chr4 195449742 195450035 -6878312 + AluJo SINE Alu 1 304 -8 947 270 116 47 chr4 195450035 195450474 -6877873 + MER20B DNA MER1_type 170 656 -127 1970 195 33 23 chr4 195451164 195451645 -6876702 + L1MB4 LINE L1 5691 6176 -4 2293 61 41 0 chr4 195451795 195452089 -6876258 + AluY SINE Alu 2 307 -4 67 0 0 0 chr4 195452184 195452251 -6876096 + AT_rich Low_complexity Low_complexity 1 67 0 629 230 23 58 chr4 195452251 195452508 -6875839 + L1ME3A LINE L1 5923 6170 0 2169 109 0 0 chr4 195453106 195453390 -6874957 + AluSx SINE Alu 1 308 0 217 0 0 0 chr4 195453390 195453414 -6874933 + (GAAAA)n Simple_repeat Simple_repeat 2 165 0 2519 47 0 3 chr4 195454198 195454495 -6873852 - AluY SINE Alu -15 296 1 26 0 0 0 chr4 195454495 195454521 -6873826 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr4 195455736 195455762 -6872585 + AT_rich Low_complexity Low_complexity 1 26 0 2180 92 0 10 chr4 195455917 195456211 -6872136 - AluSg1 SINE Alu -18 291 1 827 281 149 9 chr4 195456212 195456342 -6872005 - HAL1 LINE L1 -1950 557 447 3755 120 11 8 chr4 195456342 195456867 -6871480 - MER1A DNA MER1_type 0 527 1 827 281 149 9 chr4 195456867 195457085 -6871262 - HAL1 LINE L1 -2060 447 160 272 122 0 0 chr4 195457229 195457270 -6871077 - Charlie8 DNA MER1_type -989 1428 1388 200 189 0 0 chr4 195458745 195458782 -6869565 + (CGTG)n Simple_repeat Simple_repeat 4 40 0 2185 50 29 11 chr4 195459449 195459774 -6868573 + AluY SINE Alu 1 311 0 2185 112 0 0 chr4 195460173 195460467 -6867880 + AluSx SINE Alu 2 295 -17 210 204 20 0 chr4 195461287 195461336 -6867011 + A-rich Low_complexity Low_complexity 1 50 0 898 101 22 0 chr4 195461479 195461617 -6866730 + L1PA15 LINE L1 6022 6162 -3 422 314 48 57 chr4 195461617 195461948 -6866399 + L1ME4a LINE L1 5598 5925 -196 247 279 13 0 chr4 195462050 195462129 -6866218 - MER116 DNA Mariner 0 80 1 189 113 19 38 chr4 195462326 195462379 -6865968 + (TA)n Simple_repeat Simple_repeat 1 52 0 1636 131 61 27 chr4 195463443 195463740 -6864607 + AluJo SINE Alu 6 312 0 2648 52 0 0 chr4 195464191 195464501 -6863846 + AluY SINE Alu 1 310 -1 213 360 117 9 chr4 195464721 195464943 -6863404 - L2 LINE L2 -646 2668 2423 1442 176 38 4 chr4 195465597 195465859 -6862488 - L1MB7 LINE L1 -16 6168 5898 3573 163 40 36 chr4 195467755 195468255 -6860092 - L1MB4 LINE L1 0 6180 5675 2323 92 7 0 chr4 195468255 195468559 -6859788 + AluSg SINE Alu 1 306 -4 3573 163 40 36 chr4 195468559 195468781 -6859566 - L1MB4 LINE L1 -505 5675 5455 452 338 42 5 chr4 195468849 195469062 -6859285 + MIR SINE MIR 21 241 -21 25 0 0 0 chr4 195470484 195470509 -6857838 + AT_rich Low_complexity Low_complexity 1 25 0 183 231 39 39 chr4 195473222 195473274 -6855073 - L2 LINE L2 -31 3282 3231 567 146 52 0 chr4 195473333 195473429 -6854918 - Tigger2 DNA MER2_type -54 2664 2564 * 1123 136 61 10 chr4 195473428 195473626 -6854721 - Tigger2 DNA MER2_type -2508 210 3 1955 141 14 0 chr4 195474280 195474570 -6853777 - AluSx SINE Alu -17 295 2 1125 148 13 39 chr4 195474603 195474832 -6853515 + L1MA4A LINE L1 6076 6298 -5 2033 103 55 3 chr4 195475001 195475292 -6853055 - AluSq SINE Alu -7 306 1 317 306 72 0 chr4 195475990 195476101 -6852246 - L2 LINE L2 -21 3251 3133 21 71 0 0 chr4 195476421 195476463 -6851884 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr4 195478023 195478052 -6850295 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 195479241 195479270 -6849077 + AT_rich Low_complexity Low_complexity 1 29 0 2293 104 0 13 chr4 195480021 195480330 -6848017 - AluSq SINE Alu -8 305 1 261 0 0 0 chr4 195481477 195481506 -6846841 + (T)n Simple_repeat Simple_repeat 1 29 0 1574 192 3 0 chr4 195482987 195483279 -6845068 - AluSx SINE Alu -18 294 2 212 293 17 0 chr4 195484317 195484375 -6843972 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 427 314 48 57 chr4 195484401 195484732 -6843615 - L1ME4a LINE L1 -196 5925 5598 696 167 22 0 chr4 195484732 195484870 -6843477 - L1PA15 LINE L1 -3 6162 6022 2412 91 0 0 chr4 195485577 195485884 -6842463 - AluSc SINE Alu -2 307 1 203 256 0 0 chr4 195486853 195486896 -6841451 + GA-rich Low_complexity Low_complexity 2 44 0 761 219 8 0 chr4 195487808 195487936 -6840411 - FLAM_A SINE Alu -4 129 1 1602 171 18 74 chr4 195488353 195488568 -6839779 + MLT1A1 LTR MaLR 2 193 -172 1736 156 6 44 chr4 195488568 195488888 -6839459 - AluJo SINE Alu -4 308 1 1602 171 18 74 chr4 195488888 195489011 -6839336 + MLT1A1 LTR MaLR 193 321 -44 1902 170 39 36 chr4 195489506 195489717 -6838630 - MLT1B LTR MaLR 0 390 174 2291 93 3 0 chr4 195489717 195490029 -6838318 - AluY SINE Alu 0 313 1 1902 170 39 36 chr4 195490029 195490204 -6838143 - MLT1B LTR MaLR -216 174 1 789 198 132 20 chr4 195490925 195491122 -6837225 - MER20 DNA MER1_type 0 219 1 2085 122 14 0 chr4 195491640 195491936 -6836411 + AluSx SINE Alu 1 300 -12 409 277 73 59 chr4 195492908 195493128 -6835219 + MIR SINE MIR 20 242 -20 1684 224 26 18 chr4 195493190 195493573 -6834774 - MER58D DNA MER1_type 0 386 1 2353 105 0 0 chr4 195493780 195494086 -6834261 - AluSx SINE Alu -6 306 1 21 36 0 0 chr4 195496095 195496123 -6832224 + AT_rich Low_complexity Low_complexity 1 28 0 235 0 0 54 chr4 195498203 195498240 -6830107 + (TCC)n Simple_repeat Simple_repeat 3 37 0 2247 101 0 0 chr4 195498242 195498530 -6829817 - AluSq SINE Alu -25 288 1 21 36 0 0 chr4 195500195 195500223 -6828124 + AT_rich Low_complexity Low_complexity 1 28 0 1425 180 71 19 chr4 195502170 195502457 -6825890 - AluJb SINE Alu 0 301 1 22 0 0 0 chr4 195503705 195503727 -6824620 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 195505063 195505091 -6823256 + AT_rich Low_complexity Low_complexity 1 28 0 255 247 36 114 chr4 195505291 195505510 -6822837 - L1ME LINE L1 -316 5805 5604 2445 86 0 0 chr4 195506146 195506448 -6821899 - AluSc SINE Alu -7 302 1 241 234 78 39 chr4 195506844 195506921 -6821426 + MIR3 SINE MIR 118 197 -11 2366 95 0 0 chr4 195509949 195510253 -6818094 - AluSx SINE Alu -8 304 1 1212 250 115 26 chr4 195510809 195511277 -6817070 + MLT1J LTR MaLR 2 511 0 2311 80 3 0 chr4 195511636 195511922 -6816425 - AluSg1 SINE Alu -22 287 1 25 31 0 0 chr4 195513376 195513408 -6814939 + AT_rich Low_complexity Low_complexity 1 32 0 2036 138 3 3 chr4 195514899 195515197 -6813150 - AluSq SINE Alu -15 298 1 2042 112 0 0 chr4 195515202 195515479 -6812868 - AluSx SINE Alu -15 297 21 301 265 44 1 chr4 195515773 195515910 -6812437 + MIR SINE MIR 110 262 0 22 0 0 0 chr4 195517499 195517521 -6810826 + AT_rich Low_complexity Low_complexity 1 22 0 253 215 38 0 chr4 195518053 195518132 -6810215 + (TA)n Simple_repeat Simple_repeat 1 82 0 2160 112 6 6 chr4 195519177 195519489 -6808858 - AluSx SINE Alu 0 312 1 2326 96 3 0 chr4 195520067 195520368 -6807979 + AluSg SINE Alu 1 302 -8 231 61 0 0 chr4 195520848 195520881 -6807466 + (T)n Simple_repeat Simple_repeat 1 33 0 473 70 0 0 chr4 195520897 195520954 -6807393 - Alu SINE Alu -260 58 2 2019 126 10 0 chr4 195521707 195522000 -6806347 - AluSx SINE Alu -16 296 1 243 0 0 0 chr4 195522735 195522762 -6805585 + (CATTC)n Simple_repeat Simple_repeat 4 30 0 27 29 0 0 chr4 195523528 195523562 -6804785 + AT_rich Low_complexity Low_complexity 1 34 0 1542 190 26 35 chr4 195523709 195524056 -6804291 + MLT1A1 LTR MaLR 17 360 -5 1054 248 22 22 chr4 195524059 195524370 -6803977 + L1MCc LINE L1 81 391 -6032 622 233 7 7 chr4 195524376 195524526 -6803821 + L1MCc LINE L1 2920 3069 -4053 23 0 0 0 chr4 195524593 195524616 -6803731 + AT_rich Low_complexity Low_complexity 1 23 0 480 316 91 63 chr4 195524726 195525180 -6803167 + L2 LINE L2 2800 3265 -48 1700 154 7 21 chr4 195525850 195526129 -6802218 + AluJo SINE Alu 1 275 -37 207 0 0 0 chr4 195526143 195526166 -6802181 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 323 298 7 64 chr4 195527219 195527373 -6800974 + MER5A DNA MER1_type 6 162 -27 276 352 29 0 chr4 195527695 195527800 -6800547 + MER5B DNA MER1_type 68 175 -3 303 364 91 6 chr4 195527822 195527987 -6800360 - MIR SINE MIR -64 198 20 1802 179 42 18 chr4 195528673 195529003 -6799344 + Tigger7 DNA MER2_type 1 338 -212 806 162 28 0 chr4 195529005 195529055 -6799292 + Tigger7 DNA MER2_type 2441 2488 -99 414 0 0 0 chr4 195529055 195529101 -6799246 + (CA)n Simple_repeat Simple_repeat 2 47 0 806 162 28 0 chr4 195529101 195529192 -6799155 + Tigger7 DNA MER2_type 2488 2586 -1 2070 101 16 36 chr4 195529902 195530208 -6798139 + AluSx SINE Alu 1 300 -12 212 318 129 0 chr4 195530369 195530454 -6797893 - L2 LINE L2 -40 3232 3137 476 294 70 23 chr4 195531075 195531289 -6797058 + MIR SINE MIR 14 237 -25 21 71 0 0 chr4 195533580 195533622 -6794725 + GC_rich Low_complexity Low_complexity 1 42 0 26 64 0 0 chr4 195533734 195533781 -6794566 + GC_rich Low_complexity Low_complexity 1 47 0 717 149 0 9 chr4 195534015 195534129 -6794218 - FLAM_C SINE Alu 0 143 31 314 137 0 0 chr4 195534899 195534950 -6793397 - Alu SINE Alu -2 298 248 2639 39 0 10 chr4 195535195 195535506 -6792841 - AluY SINE Alu -3 308 1 211 331 148 43 chr4 195535664 195536057 -6792290 - L2 LINE L2 -337 2977 2544 613 234 145 47 chr4 195536304 195536539 -6791808 + MIR SINE MIR 5 262 0 193 237 203 0 chr4 195536543 195536602 -6791745 - L2 LINE L2 -1017 2297 2227 963 260 112 17 chr4 195536631 195536927 -6791420 + MLT1G LTR MaLR 9 332 -258 1857 184 38 27 chr4 195536953 195537318 -6791029 - MLT1A2 LTR MaLR 0 374 6 814 237 29 10 chr4 195537333 195537524 -6790823 + MLT1G LTR MaLR 395 541 -1 375 312 143 48 chr4 195537526 195537987 -6790360 - L2 LINE L2 -1122 2192 1688 187 182 0 36 chr4 195538543 195538598 -6789749 + CT-rich Low_complexity Low_complexity 4 56 0 193 306 24 35 chr4 195538652 195538737 -6789610 - MER5A DNA MER1_type -11 178 95 189 0 0 0 chr4 195539927 195539948 -6788399 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 192 40 0 0 chr4 195539947 195539972 -6788375 + (GA)n Simple_repeat Simple_repeat 1 25 0 207 69 0 0 chr4 195540044 195540073 -6788274 + (GA)n Simple_repeat Simple_repeat 1 29 0 228 35 0 0 chr4 195540133 195540162 -6788185 + (TG)n Simple_repeat Simple_repeat 1 29 0 * 291 28 0 0 chr4 195540161 195540197 -6788150 + (GA)n Simple_repeat Simple_repeat 1 36 0 192 256 0 0 chr4 195540378 195540421 -6787926 - L2 LINE L2 -26 3246 3204 2164 114 6 29 chr4 195541673 195541988 -6786359 + AluSg SINE Alu 1 308 -2 282 315 140 39 chr4 195542152 195542616 -6785731 + L2 LINE L2 2006 2516 -798 600 183 140 55 chr4 195542686 195542850 -6785497 - MSTD LTR MaLR -134 262 85 195 378 53 22 chr4 195542924 195543149 -6785198 + L2 LINE L2 2625 2856 -458 213 108 0 0 chr4 195543251 195543288 -6785059 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 267 214 0 18 chr4 195543336 195543392 -6784955 - L2 LINE L2 -94 3219 3165 453 279 178 19 chr4 195543939 195544232 -6784115 - L2 LINE L2 -207 3106 2771 3773 179 9 20 chr4 195544271 195544960 -6783387 + L1MB5 LINE L1 5476 6156 -18 694 262 0 6 chr4 195544960 195545128 -6783219 - MLT1B LTR MaLR -6 384 218 1655 208 102 14 chr4 195546961 195547322 -6781025 + MSTD LTR MaLR 4 396 0 1955 210 99 2 chr4 195547375 195547789 -6780558 + MLT2B1 LTR ERVL 1 454 -66 203 88 29 0 chr4 195547790 195547824 -6780523 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 2494 130 71 2 chr4 195547824 195548217 -6780130 - MSTA LTR MaLR -1 427 8 519 26 39 0 chr4 195548220 195548297 -6780050 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 883 169 0 0 chr4 195549504 195549652 -6778695 + MLT2B3 LTR ERVL 1 148 -406 800 180 12 13 chr4 195549667 195549836 -6778511 + MLT2A2 LTR ERVL 307 445 -8 473 342 32 11 chr4 195550920 195551134 -6777213 + MIR SINE MIR 26 246 -16 218 309 0 0 chr4 195551169 195551224 -6777123 + L2 LINE L2 3209 3263 -9 869 253 17 30 chr4 195551236 195551473 -6776874 - MIR SINE MIR -10 252 19 222 118 0 0 chr4 195551815 195551849 -6776498 + (CCA)n Simple_repeat Simple_repeat 1 34 0 308 302 21 0 chr4 195551895 195551991 -6776356 - MIR SINE MIR -88 174 77 571 92 11 11 chr4 195553270 195553357 -6774990 + MSTB LTR MaLR 1 87 -339 5839 154 14 12 chr4 195553401 195553766 -6774581 - L1PB1 LINE L1 0 6867 6504 297 0 0 0 chr4 195553766 195553799 -6774548 + (TA)n Simple_repeat Simple_repeat 1 33 0 5839 154 14 12 chr4 195553799 195555173 -6773174 - L1PB1 LINE L1 -363 6504 5129 * 9608 140 104 14 chr4 195555161 195555216 -6773131 - L1PB1 LINE L1 -3167 3695 3646 2071 115 3 39 chr4 195555216 195555521 -6772826 - AluSg SINE Alu -16 294 1 9608 140 104 14 chr4 195555521 195558150 -6770197 - L1PB1 LINE L1 -3216 3646 768 1979 150 23 20 chr4 195558150 195558504 -6769843 + MSTB LTR MaLR 72 426 0 1851 162 30 7 chr4 195560361 195560657 -6767690 + AluJb SINE Alu 1 303 -9 3268 170 16 57 chr4 195560711 195561560 -6766787 - MER4D LTR ERV1 0 903 1 2071 207 33 98 chr4 195561927 195562529 -6765818 - L1ME1 LINE L1 -6 6160 5613 2069 128 17 0 chr4 195562529 195562819 -6765528 - AluSx SINE Alu -17 295 1 2071 207 33 98 chr4 195562819 195562949 -6765398 - L1ME1 LINE L1 -553 5613 5476 208 256 73 24 chr4 195564243 195564325 -6764022 + MIR SINE MIR 107 192 -70 197 0 71 0 chr4 195564945 195564973 -6763374 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 24 32 0 0 chr4 195565973 195566004 -6762343 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 195566310 195566338 -6762009 + AT_rich Low_complexity Low_complexity 1 28 0 2335 106 0 0 chr4 195566905 195567207 -6761140 - AluSx SINE Alu -10 302 1 1923 143 7 7 chr4 195568140 195568433 -6759914 - AluJb SINE Alu -19 293 1 23 0 0 0 chr4 195571298 195571321 -6757026 + AT_rich Low_complexity Low_complexity 1 23 0 503 305 40 0 chr4 195571953 195572130 -6756217 + MIR SINE MIR 50 233 -29 237 65 0 0 chr4 195573618 195573649 -6754698 + (TGG)n Simple_repeat Simple_repeat 2 32 0 2582 205 25 35 chr4 195577525 195577551 -6750796 - L1MC2 LINE L1 -1 6343 6318 1773 152 0 30 chr4 195577551 195577848 -6750499 - AluJo SINE Alu -22 290 3 2582 205 25 35 chr4 195577848 195578513 -6749834 - L1MC2 LINE L1 -26 6318 5659 1820 158 14 0 chr4 195578803 195579082 -6749265 + AluJo SINE Alu 1 283 -29 267 272 35 35 chr4 195579350 195579464 -6748883 - MIR SINE MIR -29 233 120 2053 127 3 3 chr4 195579893 195580192 -6748155 - AluSc SINE Alu -10 299 1 350 244 92 0 chr4 195580315 195580434 -6747913 + MIR SINE MIR 65 194 -68 24 53 0 0 chr4 195580524 195580562 -6747785 + AT_rich Low_complexity Low_complexity 1 38 0 1895 147 3 0 chr4 195581813 195582151 -6746196 + AluSq SINE Alu 1 339 0 293 368 31 25 chr4 195584021 195584184 -6744163 + MIR3 SINE MIR 20 183 -25 24 0 0 0 chr4 195584454 195584478 -6743869 + AT_rich Low_complexity Low_complexity 1 24 0 302 213 38 25 chr4 195585052 195585132 -6743215 + MER117 DNA MER1_type 2 82 -115 2130 124 0 13 chr4 195586167 195586491 -6741856 - AluSx SINE Alu 0 312 1 2363 87 0 3 chr4 195586981 195587279 -6741068 - AluSc SINE Alu -12 297 1 1941 183 9 0 chr4 195587458 195587803 -6740544 + MER7A DNA MER2_type 1 346 0 192 286 131 0 chr4 195587874 195587958 -6740389 + MIR SINE MIR 40 134 -128 180 242 97 16 chr4 195588850 195588912 -6739435 + MIR SINE MIR 57 123 -85 22 35 0 0 chr4 195590942 195590971 -6737376 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr4 195592730 195592757 -6735590 + AT_rich Low_complexity Low_complexity 1 27 0 586 299 149 30 chr4 195593348 195593959 -6734388 - L2 LINE L2 -17 3255 2566 614 293 78 4 chr4 195594848 195595080 -6733267 + MIR SINE MIR 4 252 -10 365 266 119 0 chr4 195595313 195595422 -6732925 + L2 LINE L2 3151 3272 0 306 287 0 0 chr4 195596678 195596793 -6731554 + (TA)n Simple_repeat Simple_repeat 2 116 0 778 121 0 30 chr4 195597743 195597875 -6730472 - FRAM SINE Alu -9 167 40 282 298 27 75 chr4 195597984 195598172 -6730175 + MIR SINE MIR 30 208 -54 687 176 0 84 chr4 195598463 195598569 -6729778 - AluSq/x SINE Alu -180 132 39 977 424 57 18 chr4 195598569 195598850 -6729497 + AluSg SINE Alu 1 292 -8 687 176 0 84 chr4 195598850 195598885 -6729462 - AluSq/x SINE Alu -273 39 3 21 57 0 0 chr4 195598969 195599004 -6729343 + AT_rich Low_complexity Low_complexity 1 35 0 568 297 81 34 chr4 195599004 195599240 -6729107 + MIR SINE MIR 12 258 -4 22 88 0 0 chr4 195600162 195600219 -6728128 + AT_rich Low_complexity Low_complexity 1 57 0 871 162 12 58 chr4 195602308 195602481 -6725866 - FRAM SINE Alu -4 172 8 643 288 21 65 chr4 195603791 195604015 -6724332 + MIR SINE MIR 23 249 -13 180 0 0 0 chr4 195607490 195607510 -6720837 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 194 316 35 70 chr4 195608181 195608352 -6719995 - MIR SINE MIR -12 250 86 2297 84 3 7 chr4 195609317 195609616 -6718731 + AluSx SINE Alu 1 298 -14 240 289 0 119 chr4 195609900 195610059 -6718288 - L3 LINE CR1 -75 1502 1363 1981 80 32 86 chr4 195611851 195612164 -6716183 - AluSc SINE Alu -13 296 1 2433 65 0 16 chr4 195612571 195612879 -6715468 - AluY SINE Alu -8 303 1 736 273 85 75 chr4 195663744 195664213 -6664134 - MLT1J LTR MaLR -35 476 3 464 248 88 0 chr4 195664503 195664640 -6663707 + MIR SINE MIR 49 197 -65 263 344 46 15 chr4 195665399 195665530 -6662817 + L2 LINE L2 3137 3271 -1 2321 102 0 0 chr4 195666037 195666342 -6662005 - AluSx SINE Alu -7 305 1 3325 75 39 5 chr4 195666714 195667152 -6661195 - MLT2A2 LTR ERVL 0 453 1 2003 177 30 13 chr4 195667530 195667988 -6660359 - MLT2B1 LTR ERVL -1 514 1 1764 199 62 28 chr4 195672068 195672504 -6655843 - MLT1C LTR MaLR 0 467 17 220 197 0 49 chr4 195677400 195677461 -6650886 + (CAACT)n Simple_repeat Simple_repeat 1 58 0 328 205 0 60 chr4 195677469 195677654 -6650693 + (CAGCC)n Simple_repeat Simple_repeat 1 174 0 360 260 0 61 chr4 195677681 195677862 -6650485 + (CAGCC)n Simple_repeat Simple_repeat 5 174 0 619 96 0 19 chr4 195678201 195678305 -6650042 - AluSg/x SINE Alu 0 312 211 24 32 0 0 chr4 195679436 195679467 -6648880 + AT_rich Low_complexity Low_complexity 1 31 0 2082 89 3 63 chr4 195679723 195680064 -6648283 + AluSx SINE Alu 1 312 0 2116 136 0 0 chr4 195680813 195681115 -6647232 - AluSx SINE Alu -10 302 1 224 265 213 15 chr4 195681493 195681629 -6646718 + L3 LINE CR1 613 775 -802 2277 93 3 7 chr4 195683296 195683597 -6644750 - AluSc SINE Alu -9 300 1 2370 136 22 58 chr4 195683651 195684099 -6644248 - MSTB1 LTR MaLR 0 432 1 233 319 0 0 chr4 195684249 195684318 -6644029 + MIR3 SINE MIR 91 159 -49 182 220 60 0 chr4 195684378 195684428 -6643919 - L2 LINE L2 -4 3268 3216 596 251 79 0 chr4 195684530 195684745 -6643602 - HsTC2 DNA Tc2 -70 1828 1597 286 261 92 15 chr4 195685275 195685405 -6642942 - MER103 DNA DNA -12 154 15 2899 96 84 2 chr4 195685420 195685846 -6642501 + MER4C LTR ERV1 5 465 0 198 230 54 27 chr4 195686505 195686579 -6641768 + MIR SINE MIR 68 143 -119 1931 169 48 24 chr4 195686589 195687045 -6641302 - MLT1C LTR MaLR 0 467 1 285 268 104 24 chr4 195687791 195687955 -6640392 - MIR SINE MIR 0 262 86 320 322 38 19 chr4 195689298 195689453 -6638894 + MIR SINE MIR 34 193 -61 818 91 8 0 chr4 195689542 195689663 -6638684 + (CAT)n Simple_repeat Simple_repeat 3 124 0 1768 78 156 0 chr4 195689768 195690024 -6638323 - AluSx SINE Alu -6 296 1 28 29 0 0 chr4 195690090 195690125 -6638222 + AT_rich Low_complexity Low_complexity 1 35 0 240 315 14 0 chr4 195690658 195690731 -6637616 + MIR SINE MIR 20 93 -169 232 270 126 27 chr4 195690799 195690910 -6637437 - L2 LINE L2 -1 3312 3191 23 68 0 0 chr4 195691510 195691554 -6636793 + AT_rich Low_complexity Low_complexity 1 44 0 706 157 22 22 chr4 195692098 195692336 -6636011 + CT-rich Low_complexity Low_complexity 1 238 0 244 228 0 35 chr4 195692338 195692395 -6635952 + C-rich Low_complexity Low_complexity 5 59 0 411 233 0 0 chr4 195692399 195692502 -6635845 + CT-rich Low_complexity Low_complexity 3 105 0 22 0 0 0 chr4 195694013 195694035 -6634312 + AT_rich Low_complexity Low_complexity 1 22 0 2253 113 0 3 chr4 195694667 195694978 -6633369 - AluSx SINE Alu -2 310 1 905 137 23 46 chr4 195695196 195695371 -6632976 + MLT1B LTR MaLR 1 171 -219 378 154 56 0 chr4 195695384 195695461 -6632886 + AluJ/FRAM SINE Alu 230 301 -1 1066 188 10 0 chr4 195695502 195695699 -6632648 + MLT1B LTR MaLR 192 390 0 2061 100 29 4 chr4 195696081 195696361 -6631986 + AluSg SINE Alu 4 290 -20 197 297 41 47 chr4 195698446 195698607 -6629740 + MIR SINE MIR 13 172 -36 302 294 0 0 chr4 195699721 195699789 -6628558 + (CGAGA)n Simple_repeat Simple_repeat 1 68 0 801 180 78 34 chr4 195700269 195700475 -6627872 + MER20 DNA MER1_type 2 216 -3 2396 49 0 7 chr4 195700642 195700952 -6627395 - AluY SINE Alu 0 308 1 1445 235 85 22 chr4 195702618 195703078 -6625269 + MLT1J LTR MaLR 3 491 -20 198 167 0 0 chr4 195703352 195703388 -6624959 + CT-rich Low_complexity Low_complexity 1 36 0 253 286 7 92 chr4 195703644 195703814 -6624533 + MIR SINE MIR 30 184 -74 2145 106 48 0 chr4 195703879 195704172 -6624175 - AluSx SINE Alu -5 307 1 220 172 52 17 chr4 195705845 195705903 -6622444 + L2 LINE L2 3213 3272 0 183 42 0 0 chr4 195705936 195705960 -6622387 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 240 282 100 36 chr4 195707704 195707814 -6620533 + L2 LINE L2 3133 3249 -23 266 262 188 27 chr4 195708268 195708417 -6619930 + MIR SINE MIR 90 262 0 24 53 0 0 chr4 195708496 195708534 -6619813 + AT_rich Low_complexity Low_complexity 1 38 0 197 336 67 34 chr4 195708814 195708933 -6619414 - L2 LINE L2 -17 3255 3133 218 292 157 11 chr4 195709134 195709223 -6619124 + L2 LINE L2 3204 3305 -8 29 0 0 0 chr4 195709416 195709445 -6618902 + AT_rich Low_complexity Low_complexity 1 29 0 185 303 50 20 chr4 195711633 195711732 -6616615 + L2 LINE L2 3161 3262 -10 441 231 54 15 chr4 195711778 195711908 -6616439 + MIR SINE MIR 125 259 -3 1885 70 0 0 chr4 195712747 195712976 -6615371 - AluY SINE Alu -9 302 74 189 0 26 77 chr4 195715500 195715514 -6612833 + (TTCA)n Simple_repeat Simple_repeat 3 16 -23 2298 103 0 13 chr4 195715514 195715826 -6612521 - AluSx SINE Alu -4 308 1 189 0 26 77 chr4 195715826 195715850 -6612497 + (TTCA)n Simple_repeat Simple_repeat 16 39 0 1819 83 0 29 chr4 195716544 195716786 -6611561 + AluSc SINE Alu 72 306 -3 321 271 73 0 chr4 195716824 195716920 -6611427 + L2 LINE L2 3206 3308 -5 447 301 15 10 chr4 195718004 195718200 -6610147 - L1ME3A LINE L1 -300 5870 5674 547 291 73 24 chr4 195718320 195718526 -6609821 - MIR SINE MIR -26 236 21 2621 74 40 0 chr4 195718817 195719167 -6609180 - THE1B LTR MaLR 0 364 1 1951 97 65 7 chr4 195720229 195720507 -6607840 - AluSg SINE Alu -16 294 1 180 0 0 0 chr4 195720512 195720532 -6607815 + (T)n Simple_repeat Simple_repeat 1 20 0 466 108 194 0 chr4 195721082 195721175 -6607172 - HY1 scRNA scRNA -1 111 1 299 146 18 18 chr4 195721218 195721273 -6607074 + MIR SINE MIR 94 148 -60 1534 189 0 64 chr4 195722170 195722498 -6605849 - AluJb SINE Alu -5 307 1 1574 199 123 84 chr4 195723230 195724071 -6604276 + LTR28 LTR ERV1 1 1019 -1 429 283 194 25 chr4 195724081 195724670 -6603677 + L2 LINE L2 2526 3223 -90 2440 95 31 11 chr4 195725748 195726105 -6602242 - THE1B LTR MaLR 0 364 1 39 38 0 0 chr4 195726634 195726687 -6601660 + AT_rich Low_complexity Low_complexity 1 53 0 476 329 23 28 chr4 195727426 195727642 -6600705 + MIR SINE MIR 14 228 -34 644 325 8 41 chr4 195728989 195729166 -6599181 + MIR SINE MIR 28 196 -66 1927 125 49 0 chr4 195729166 195729454 -6598893 + AluSx SINE Alu 1 302 -10 644 325 8 41 chr4 195729454 195729519 -6598828 + MIR SINE MIR 196 262 0 213 341 24 12 chr4 195729929 195730014 -6598333 + MIR SINE MIR 59 144 -118 22 0 0 0 chr4 195730477 195730499 -6597848 + AT_rich Low_complexity Low_complexity 1 22 0 574 242 8 0 chr4 195730575 195730707 -6597640 + FLAM_A SINE Alu 10 142 0 21 36 0 0 chr4 195732442 195732470 -6595877 + AT_rich Low_complexity Low_complexity 1 28 0 3314 206 52 35 chr4 195732782 195733888 -6594459 - L1ME1 LINE L1 -5 6161 5023 * 3561 202 21 38 chr4 195733886 195734021 -6594326 - L1MB5 LINE L1 0 6174 6038 1732 156 3 23 chr4 195734021 195734322 -6594025 + AluJo SINE Alu 1 295 -17 3561 202 21 38 chr4 195734322 195735086 -6593261 - L1MB5 LINE L1 -136 6038 5290 2347 195 78 81 chr4 195735086 195736060 -6592287 - L1ME1 LINE L1 -1110 5036 4066 245 340 156 14 chr4 195736102 195736390 -6591957 + L2 LINE L2 2013 2341 -973 2098 122 10 3 chr4 195736390 195736685 -6591662 - AluSc SINE Alu -12 297 1 23 0 0 0 chr4 195736685 195736708 -6591639 + AT_rich Low_complexity Low_complexity 1 23 0 809 319 104 36 chr4 195736893 195737394 -6590953 + L2 LINE L2 2779 3313 0 283 236 0 14 chr4 195737459 195737531 -6590816 - LTR33A LTR ERVL -9 514 444 253 294 232 11 chr4 195738429 195738606 -6589741 + L2 LINE L2 3057 3272 0 199 286 29 29 chr4 195742415 195742485 -6585862 - MIR SINE MIR -76 132 63 572 299 84 0 chr4 195742641 195742855 -6585492 + MIR SINE MIR 31 262 0 35 83 0 0 chr4 195743287 195743371 -6584976 + AT_rich Low_complexity Low_complexity 1 84 0 189 0 0 0 chr4 195743666 195743687 -6584660 + (A)n Simple_repeat Simple_repeat 1 21 0 2205 139 88 8 chr4 195744059 195744455 -6583892 - MSTA LTR MaLR 0 428 1 21 36 0 0 chr4 195744670 195744698 -6583649 + AT_rich Low_complexity Low_complexity 1 28 0 709 107 66 0 chr4 195744973 195745094 -6583253 + MSTA LTR MaLR 3 131 -297 657 131 47 0 chr4 195745092 195745199 -6583148 + MSTA LTR MaLR 254 365 -63 * 187 229 0 0 chr4 195745410 195745445 -6582902 - L2 LINE L2 -102 3170 3136 229 209 81 47 chr4 195745642 195745728 -6582619 - MIR SINE MIR -77 185 97 480 286 36 0 chr4 195747336 195747476 -6580871 - MIR SINE MIR 0 262 118 312 306 41 25 chr4 195747604 195747725 -6580622 + L2 LINE L2 3143 3265 -7 190 255 20 0 chr4 195747749 195747800 -6580547 + MIR SINE MIR 68 119 -143 31 0 0 0 chr4 195749320 195749351 -6578996 + AT_rich Low_complexity Low_complexity 1 31 0 208 245 0 0 chr4 195749806 195749855 -6578492 + CT-rich Low_complexity Low_complexity 4 52 0 245 193 0 35 chr4 195749996 195750053 -6578294 + L3 LINE CR1 838 892 -685 310 333 0 21 chr4 195750332 195750425 -6577922 + L3 LINE CR1 1272 1362 -215 188 369 0 0 chr4 195750513 195750578 -6577769 + L3 LINE CR1 1512 1576 -1 219 69 0 0 chr4 195750851 195750880 -6577467 + (ATG)n Simple_repeat Simple_repeat 2 30 0 1161 87 9 9 chr4 195751298 195751536 -6576811 + (ATG)n Simple_repeat Simple_repeat 1 238 0 4304 97 6 35 chr4 195751908 195752565 -6575782 + L1PA15 LINE L1 5522 6159 -6 825 280 108 5 chr4 195752692 195753064 -6575283 - MLT1J2 LTR MaLR -18 432 23 23 0 0 0 chr4 195754798 195754821 -6573526 + AT_rich Low_complexity Low_complexity 1 23 0 722 264 140 16 chr4 195756315 195756630 -6571717 + L2 LINE L2 1863 2216 -1098 272 336 28 21 chr4 195756634 195756777 -6571570 + L2 LINE L2 2544 2687 -627 * 576 305 153 35 chr4 195756775 195757201 -6571146 + L2 LINE L2 2836 3311 -2 2198 108 0 3 chr4 195758366 195758653 -6569694 + AluSq SINE Alu 9 294 -19 809 86 0 19 chr4 195758557 195758662 -6569685 + AluSp/q SINE Alu 199 301 -12 309 349 146 21 chr4 195760334 195760718 -6567629 - L2 LINE L2 -925 2389 1958 27 0 0 0 chr4 195760849 195760876 -6567471 + AT_rich Low_complexity Low_complexity 1 27 0 2638 161 27 66 chr4 195760896 195760985 -6567362 + MER34 LTR ERV1 1 92 -450 2500 78 7 0 chr4 195760985 195761294 -6567053 + AluSx SINE Alu 1 311 -1 2638 161 27 66 chr4 195761294 195761768 -6566579 + MER34 LTR ERV1 92 542 0 245 256 73 36 chr4 195763012 195763149 -6565198 - L1M4 LINE L1 -2111 4035 3894 2668 35 0 6 chr4 195765295 195765608 -6562739 + AluY SINE Alu 1 311 0 2094 128 3 25 chr4 195766488 195766807 -6561540 + AluSx SINE Alu 1 312 0 786 201 52 17 chr4 195767035 195767209 -6561138 + L1MC3 LINE L1 6714 6893 -892 3334 145 15 64 chr4 195767212 195767577 -6560770 - Tigger4(Zombi) DNA MER2_type -30 2701 2381 2249 93 10 0 chr4 195767577 195767868 -6560479 - AluSp SINE Alu -19 294 1 3334 145 15 64 chr4 195767868 195768159 -6560188 - Tigger4(Zombi) DNA MER2_type -350 2381 2077 1066 70 0 0 chr4 195768160 195768288 -6560059 - AluSg/x SINE Alu -15 295 168 1239 158 28 7 chr4 195768288 195768578 -6559769 - Tigger4(Zombi) DNA MER2_type -649 2082 6 21 0 0 0 chr4 195769006 195769027 -6559320 + AT_rich Low_complexity Low_complexity 1 21 0 2155 119 0 31 chr4 195769049 195769369 -6558978 - AluSq SINE Alu -3 310 1 229 282 0 0 chr4 195772023 195772094 -6556253 + T-rich Low_complexity Low_complexity 1 71 0 388 173 113 107 chr4 195774189 195774339 -6554008 - L2 LINE L2 0 3313 3163 2106 97 3 7 chr4 195774707 195774996 -6553351 + AluSc SINE Alu 10 297 -12 22 0 0 0 chr4 195775224 195775246 -6553101 + AT_rich Low_complexity Low_complexity 1 22 0 228 330 147 28 chr4 195775617 195775726 -6552621 + MIR SINE MIR 134 255 -7 538 187 56 126 chr4 195775757 195775875 -6552472 + MER33 DNA MER1_type 5 105 -2480 728 207 0 21 chr4 195775875 195776020 -6552327 + L1PB4 LINE L1 6013 6154 -2 538 187 56 126 chr4 195776020 195776099 -6552248 + MER33 DNA MER1_type 105 188 -136 * 950 161 36 5 chr4 195776087 195776279 -6552068 + MER33 DNA MER1_type 125 322 -2 723 188 146 0 chr4 195776288 195776453 -6551894 - MER5A DNA MER1_type 0 189 1 462 218 10 10 chr4 195776464 195776565 -6551782 + MER5A DNA MER1_type 4 104 -85 209 256 165 38 chr4 195776635 195776768 -6551579 + MER5B DNA MER1_type 2 151 -27 654 265 96 13 chr4 195777256 195777486 -6550861 + MIR SINE MIR 9 257 -5 2459 94 3 0 chr4 195778086 195778393 -6549954 - AluSp SINE Alu -5 308 1 2339 107 3 0 chr4 195779007 195779315 -6549032 - AluSx SINE Alu -3 309 1 243 168 15 117 chr4 195779583 195779780 -6548567 + CT-rich Low_complexity Low_complexity 3 179 0 190 229 21 0 chr4 195780123 195780171 -6548176 + L2 LINE L2 3265 3313 0 2559 7 0 3 chr4 195781296 195781578 -6546769 - AluYa5 SINE Alu -30 281 1 23 33 0 0 chr4 195781898 195781928 -6546419 + AT_rich Low_complexity Low_complexity 1 30 0 203 175 0 0 chr4 195782073 195782113 -6546234 + T-rich Low_complexity Low_complexity 1 40 0 243 0 0 0 chr4 195784276 195784303 -6544044 + (A)n Simple_repeat Simple_repeat 1 27 0 219 146 0 0 chr4 195786344 195786385 -6541962 + (TG)n Simple_repeat Simple_repeat 2 42 0 415 181 21 125 chr4 195789009 195789078 -6539269 - HAL1 LINE L1 -856 1651 1576 1616 121 28 57 chr4 195789078 195789360 -6538987 + AluJb SINE Alu 9 282 -30 415 181 21 125 chr4 195789360 195789374 -6538973 - HAL1 LINE L1 -931 1576 1562 243 0 0 0 chr4 195789374 195789401 -6538946 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 415 181 21 125 chr4 195789401 195789460 -6538887 - HAL1 LINE L1 -945 1562 1523 478 301 24 9 chr4 195789927 195790140 -6538207 - L1ME LINE L1 -670 5496 5281 37 39 0 0 chr4 195790158 195790209 -6538138 + AT_rich Low_complexity Low_complexity 1 51 0 213 254 18 0 chr4 195790428 195790483 -6537864 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 228 217 33 33 chr4 195790499 195790591 -6537756 + (TCTA)n Simple_repeat Simple_repeat 4 95 0 277 211 55 37 chr4 195790603 195790712 -6537635 + L1MC4 LINE L1 7932 8042 0 2242 96 0 0 chr4 195793005 195793308 -6535039 - AluY SINE Alu 0 304 2 2384 71 3 0 chr4 195794399 195794694 -6533653 - AluY SINE Alu -15 296 1 416 328 100 13 chr4 195795784 195796013 -6532334 + MIR SINE MIR 8 256 -6 299 267 141 26 chr4 195796034 195796225 -6532122 + MIR SINE MIR 18 230 -32 408 294 5 65 chr4 195796814 195796944 -6531403 + MIR SINE MIR 20 137 -125 1990 123 0 60 chr4 195796944 195797260 -6531087 + AluSx SINE Alu 1 297 -15 408 294 5 65 chr4 195797260 195797313 -6531034 + MIR SINE MIR 137 192 -70 208 357 112 21 chr4 195797366 195797509 -6530838 + L2 LINE L2 3112 3267 -5 28 61 0 0 chr4 195799708 195799757 -6528590 + AT_rich Low_complexity Low_complexity 1 49 0 49 52 0 0 chr4 195799795 195799872 -6528475 + AT_rich Low_complexity Low_complexity 1 77 0 193 161 323 0 chr4 195801648 195801710 -6526637 + L2 LINE L2 3197 3278 -35 2073 139 3 0 chr4 195802482 195802783 -6525564 + AluSx SINE Alu 6 307 -5 365 100 0 17 chr4 195802791 195802851 -6525496 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 651 291 87 4 chr4 195803095 195803336 -6525011 + MIR SINE MIR 2 262 0 204 308 69 44 chr4 195804004 195804163 -6524184 - MIR SINE MIR -17 245 83 208 281 0 18 chr4 195804492 195804549 -6523798 + GA-rich Low_complexity Low_complexity 1 56 0 591 260 53 24 chr4 195805313 195805482 -6522865 + MER45A DNA AcHobo 4 177 -1 863 201 129 40 chr4 195805740 195806018 -6522329 + MER33 DNA MER1_type 13 315 -9 208 263 70 35 chr4 195806204 195806318 -6522029 + L2 LINE L2 2513 2630 -684 835 148 0 15 chr4 195806336 195806471 -6521876 - FLAM_C SINE Alu -10 133 1 356 250 115 95 chr4 195806743 195807239 -6521108 - L1M2 LINE L1 -5611 1238 733 330 323 60 55 chr4 195807827 195808044 -6520303 - MIR SINE MIR -31 231 14 241 314 66 25 chr4 195810065 195810186 -6518161 - MIR SINE MIR -118 144 19 2078 122 14 3 chr4 195810186 195810481 -6517866 + AluSx SINE Alu 6 303 -9 2711 163 52 5 chr4 195811028 195811924 -6516423 - L1MA9 LINE L1 0 6312 5315 225 0 0 0 chr4 195811932 195811957 -6516390 + (TC)n Simple_repeat Simple_repeat 2 26 0 313 263 80 44 chr4 195812108 195812245 -6516102 + MIR SINE MIR 107 248 -14 21 0 0 0 chr4 195814964 195814985 -6513362 + AT_rich Low_complexity Low_complexity 1 21 0 2219 103 0 3 chr4 195816713 195817025 -6511322 - AluYa5 SINE Alu 0 311 1 311 44 22 0 chr4 195819516 195819561 -6508786 + (GA)n Simple_repeat Simple_repeat 2 47 0 270 360 58 25 chr4 195820939 195821181 -6507166 + MIR SINE MIR 2 251 -11 718 244 161 42 chr4 195821347 195821442 -6506905 + MSTD LTR MaLR 2 84 -312 1792 173 49 32 chr4 195821442 195821811 -6506536 - THE1C LTR MaLR 0 375 1 718 244 161 42 chr4 195821811 195821873 -6506474 + MSTD LTR MaLR 84 137 -259 5445 160 28 65 chr4 195821873 195822981 -6505366 + MER11C LTR ERVK 1 1067 -4 718 244 161 42 chr4 195822981 195823175 -6505172 + MSTD LTR MaLR 137 396 0 264 337 120 47 chr4 195824116 195824517 -6503830 + L2 LINE L2 2825 3254 -18 512 350 95 19 chr4 195824923 195825256 -6503091 - L2 LINE L2 -2 3311 3005 4658 130 102 51 chr4 195825256 195826115 -6502232 - MER4D LTR ERV1 0 903 1 512 350 95 19 chr4 195826115 195826342 -6502005 - L2 LINE L2 -308 3005 2797 2161 118 24 0 chr4 195826342 195826638 -6501709 - AluSg SINE Alu -7 303 1 512 350 95 19 chr4 195826638 195826781 -6501566 - L2 LINE L2 -516 2797 2556 180 111 0 0 chr4 195826866 195826893 -6501454 + (TG)n Simple_repeat Simple_repeat 1 27 0 192 350 100 0 chr4 195827326 195827446 -6500901 + L2 LINE L2 3179 3310 -3 228 298 81 57 chr4 195827986 195828110 -6500237 - L2 LINE L2 -13 3259 3133 2187 129 0 3 chr4 195829372 195829682 -6498665 + AluSx SINE Alu 1 309 -3 2323 95 0 0 chr4 195831745 195832063 -6496284 - AluSg SINE Alu 0 318 1 2496 84 0 3 chr4 195832904 195833215 -6495132 - AluSg SINE Alu 0 310 1 343 307 37 33 chr4 195834084 195834299 -6494048 - MLT1J LTR MaLR -46 465 250 261 197 99 14 chr4 195835612 195835683 -6492664 - L2 LINE L2 0 3272 3196 278 256 58 50 chr4 195837071 195837192 -6491155 + MIR SINE MIR 54 175 -87 244 345 11 0 chr4 195837742 195837829 -6490518 + L2 LINE L2 3184 3271 -1 23 0 0 0 chr4 195838483 195838506 -6489841 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 195838661 195838686 -6489661 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr4 195838721 195838742 -6489605 + AT_rich Low_complexity Low_complexity 1 21 0 349 243 114 21 chr4 195838781 195838921 -6489426 + L1ME LINE L1 5613 5765 -356 261 307 132 18 chr4 195839145 195839259 -6489088 + L2 LINE L2 3187 3313 0 991 224 6 0 chr4 195840159 195840333 -6488014 - FAM SINE Alu 0 175 1 793 139 42 35 chr4 195840731 195840875 -6487472 + FRAM SINE Alu 20 164 -12 24 67 0 0 chr4 195841350 195841395 -6486952 + AT_rich Low_complexity Low_complexity 1 45 0 2453 73 7 0 chr4 195841441 195841741 -6486606 - L1PA8 LINE L1 0 6172 5871 1797 181 7 3 chr4 195842295 195842594 -6485753 + AluJo SINE Alu 1 300 -12 2185 103 3 0 chr4 195843061 195843352 -6484995 + AluSx SINE Alu 1 292 -20 750 195 0 0 chr4 195843631 195843754 -6484593 + FLAM_C SINE Alu 2 124 -19 2396 91 10 0 chr4 195844263 195844571 -6483776 - AluSp SINE Alu -2 311 1 22 0 0 0 chr4 195845347 195845369 -6482978 + AT_rich Low_complexity Low_complexity 1 22 0 225 227 160 0 chr4 195846039 195846114 -6482233 - MIR SINE MIR -9 253 167 455 316 106 17 chr4 195846275 195846512 -6481835 - MIR SINE MIR 0 262 5 192 77 0 0 chr4 195846679 195846705 -6481642 + (T)n Simple_repeat Simple_repeat 1 26 0 28 0 0 0 chr4 195847091 195847119 -6481228 + AT_rich Low_complexity Low_complexity 1 28 0 2226 100 3 10 chr4 195847890 195848189 -6480158 + AluSp SINE Alu 1 297 -16 25 31 0 0 chr4 195848924 195848956 -6479391 + AT_rich Low_complexity Low_complexity 1 32 0 365 312 163 41 chr4 195849056 195849547 -6478800 + L2 LINE L2 2328 2878 -436 181 281 62 78 chr4 195849828 195849956 -6478391 + L2 LINE L2 3188 3313 0 4044 113 57 5 chr4 195850634 195851245 -6477102 - LTR9B LTR ERV1 0 644 2 354 252 74 30 chr4 195851494 195851629 -6476718 - L2 LINE L2 0 3313 3173 1511 141 60 46 chr4 195851996 195852279 -6476068 + AluJo SINE Alu 1 287 -25 383 300 29 47 chr4 195852427 195852597 -6475750 - MIR SINE MIR -7 255 89 329 217 0 0 chr4 195853974 195854034 -6474313 - FLAM SINE Alu -2 131 72 22 0 0 0 chr4 195854122 195854144 -6474203 + AT_rich Low_complexity Low_complexity 1 22 0 420 333 19 19 chr4 195856030 195856214 -6472133 - MIR SINE MIR -35 227 40 467 296 86 0 chr4 195856998 195857150 -6471197 - LTR33 LTR ERVL -356 165 1 4128 178 59 9 chr4 195857648 195858024 -6470323 - MER21B LTR ERV1 -1 862 506 1810 166 0 3 chr4 195858024 195858320 -6470027 + AluJb SINE Alu 1 295 -17 4128 178 59 9 chr4 195858320 195858719 -6469628 - MER21B LTR ERV1 -357 506 48 1026 172 34 29 chr4 195858721 195858930 -6469417 - MER20 DNA MER1_type -9 210 1 308 281 163 19 chr4 195859312 195859472 -6468875 + L2 LINE L2 2582 2764 -550 276 215 25 25 chr4 195859923 195860002 -6468345 + GA-rich Low_complexity Low_complexity 4 82 0 194 269 58 0 chr4 195861807 195861859 -6466488 - L3b LINE CR1 -96 1487 1433 2576 71 0 0 chr4 195862940 195863249 -6465098 - AluSq SINE Alu -4 309 1 1716 252 81 22 chr4 195863398 195863978 -6464369 - HsTC2a DNA Tc2 -130 614 1 1974 146 14 3 chr4 195864027 195864321 -6464026 + AluJo SINE Alu 1 297 -15 315 298 16 41 chr4 195864431 195864552 -6463795 + MIR SINE MIR 84 201 -61 299 232 0 29 chr4 195864800 195864869 -6463478 + AluSp SINE Alu 127 193 -110 599 177 40 0 chr4 195864876 195865000 -6463347 + FRAM SINE Alu 32 160 -16 184 333 14 0 chr4 195865394 195865466 -6462881 + MIR SINE MIR 14 86 -176 1366 103 0 0 chr4 195865538 195865722 -6462625 - AluSg/x SINE Alu 0 310 127 3194 159 35 6 chr4 195866012 195866526 -6461821 - L1PB4 LINE L1 -7 6149 5621 342 77 0 2 chr4 195866551 195866601 -6461746 - L1M2 LINE L1 -492 5664 5616 269 217 33 11 chr4 195866603 195866695 -6461652 + (TA)n Simple_repeat Simple_repeat 2 95 0 606 113 0 0 chr4 195867177 195867274 -6461073 + (TA)n Simple_repeat Simple_repeat 2 98 0 200 167 0 0 chr4 195867776 195867806 -6460541 + polypurine Low_complexity Low_complexity 2 31 0 2470 60 0 3 chr4 195868655 195868954 -6459393 - AluY SINE Alu -13 298 1 353 306 0 19 chr4 195869238 195869346 -6459001 - MER5A DNA MER1_type 0 189 84 2311 89 0 35 chr4 195869627 195869942 -6458405 - AluSc SINE Alu -5 304 1 466 299 56 26 chr4 195869954 195870188 -6458159 + MIR SINE MIR 18 258 -4 2267 50 7 14 chr4 195870395 195870706 -6457641 - AluY SINE Alu 0 309 1 1187 225 89 54 chr4 195871450 195871855 -6456492 - MER31B LTR ERV1 0 466 48 225 0 0 0 chr4 195872087 195872112 -6456235 + (TC)n Simple_repeat Simple_repeat 2 26 0 232 119 71 95 chr4 195872112 195872196 -6456151 + L1MC4 LINE L1 6614 6695 -1347 2175 167 44 71 chr4 195873470 195873948 -6454399 - MLT1C LTR MaLR -2 465 1 189 287 93 39 chr4 195874348 195874477 -6453870 - L2 LINE L2 0 3272 3137 2166 97 10 3 chr4 195874594 195874719 -6453628 + AluSq SINE Alu 8 131 -182 207 0 0 0 chr4 195874719 195874742 -6453605 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2166 97 10 3 chr4 195874742 195874906 -6453441 + AluSq SINE Alu 131 299 -14 21 0 0 0 chr4 195875415 195875436 -6452911 + AT_rich Low_complexity Low_complexity 1 21 0 208 215 31 15 chr4 195875588 195875653 -6452694 - MIR SINE MIR -25 237 172 1831 153 7 23 chr4 195875966 195876267 -6452080 - AluJb SINE Alu -16 296 1 215 158 26 0 chr4 195876951 195876989 -6451358 + (CACAG)n Simple_repeat Simple_repeat 2 40 0 288 0 0 0 chr4 195877278 195877310 -6451037 + (TGAG)n Simple_repeat Simple_repeat 3 34 0 2073 113 41 0 chr4 195878114 195878406 -6449941 - AluSx SINE Alu -8 304 1 411 21 0 0 chr4 195878492 195878540 -6449807 + (CA)n Simple_repeat Simple_repeat 2 49 0 2194 314 141 31 chr4 195878662 195879622 -6448725 + L2 LINE L2 814 1667 -1646 2315 71 10 7 chr4 195879622 195879918 -6448429 - AluSp SINE Alu -16 297 1 2194 314 141 31 chr4 195879918 195880978 -6447369 + L2 LINE L2 1667 3111 -202 1037 176 88 19 chr4 195880978 195881183 -6447164 + MER20 DNA MER1_type 1 219 0 2194 314 141 31 chr4 195881183 195881240 -6447107 + L2 LINE L2 3111 3160 -153 766 283 96 9 chr4 195881230 195881460 -6446887 - MIR SINE MIR 0 262 13 * 252 279 139 16 chr4 195881497 195881619 -6446728 + L2 LINE L2 3176 3312 -1 196 294 43 43 chr4 195881849 195881941 -6446406 - MIR3 SINE MIR -4 204 113 2100 138 0 0 chr4 195881942 195882239 -6446108 + AluSx SINE Alu 1 297 -15 2229 112 0 0 chr4 195882463 195882759 -6445588 - AluSg SINE Alu -14 296 1 543 265 123 89 chr4 195883349 195884116 -6444231 + L1MC4 LINE L1 7250 8042 0 183 306 34 105 chr4 195885833 195886042 -6442305 - L2 LINE L2 -177 3095 2902 385 214 20 20 chr4 195886193 195886291 -6442056 + U13 snRNA snRNA 1 98 -6 418 315 79 15 chr4 195887601 195887711 -6440636 + MIR SINE MIR 36 138 -124 2284 107 3 10 chr4 195887711 195888021 -6440326 - AluSq SINE Alu -5 308 1 418 315 79 15 chr4 195888021 195888113 -6440234 + MIR SINE MIR 138 251 -11 2436 98 0 0 chr4 195888621 195888928 -6439419 - AluSx SINE Alu -5 307 1 215 232 12 61 chr4 195889027 195889109 -6439238 + MIR SINE MIR 183 260 -2 2162 109 10 0 chr4 195890082 195890375 -6437972 + AluSg SINE Alu 1 296 -14 214 370 97 26 chr4 195891955 195892109 -6436238 - L2 LINE L2 -9 3263 3099 2183 97 10 10 chr4 195892139 195892437 -6435910 - AluSx SINE Alu -13 299 2 2243 87 3 0 chr4 195893143 195893430 -6434917 + AluSx SINE Alu 1 288 -24 23 0 0 0 chr4 195894564 195894587 -6433760 + AT_rich Low_complexity Low_complexity 1 23 0 1932 140 27 0 chr4 195894788 195895088 -6433259 + AluSq SINE Alu 1 308 -5 2269 110 3 0 chr4 195897268 195897615 -6430732 - AluSq SINE Alu 0 350 3 225 0 0 0 chr4 195897618 195897643 -6430704 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 951 227 143 7 chr4 195897666 195897952 -6430395 + HAL1 LINE L1 13 337 -2170 743 294 141 13 chr4 195897962 195898346 -6430001 + HAL1 LINE L1 413 845 -1662 1244 153 61 4 chr4 195898595 195898824 -6429523 + L1MA8 LINE L1 6047 6288 -3 2131 135 7 0 chr4 195899540 195899837 -6428510 - AluSx SINE Alu -13 299 1 2037 131 10 13 chr4 195901014 195901327 -6427020 + AluSx SINE Alu 1 312 0 432 340 79 21 chr4 195901838 195902367 -6425980 + L2 LINE L2 2378 2937 -377 207 0 0 0 chr4 195902435 195902458 -6425889 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6803 20 4 0 chr4 195902461 195903197 -6425150 - L1PA4 LINE L1 -10 6145 5407 230 348 14 0 chr4 195903435 195903504 -6424843 - MIR SINE MIR -58 150 81 317 266 28 28 chr4 195904371 195904480 -6423867 + GA-rich Low_complexity Low_complexity 1 109 0 1142 248 49 48 chr4 195904819 195905529 -6422818 + HAL1b LINE L1 259 1109 -239 3839 241 65 7 chr4 195905544 195907109 -6421238 + L1ME1 LINE L1 4153 5812 -354 1034 134 23 29 chr4 195907111 195907283 -6421064 + AluJo SINE Alu 118 288 -24 1328 230 40 12 chr4 195907310 195907632 -6420715 + L1ME1 LINE L1 5831 6161 -5 21 36 0 0 chr4 195907880 195907908 -6420439 + AT_rich Low_complexity Low_complexity 1 28 0 564 297 45 116 chr4 195909601 195909709 -6418638 + L3 LINE CR1 911 1025 -552 2341 105 0 0 chr4 195909709 195910014 -6418333 + AluY SINE Alu 7 311 0 564 297 45 116 chr4 195910014 195910544 -6417803 + L3 LINE CR1 1025 1504 -73 297 0 0 0 chr4 195911390 195911423 -6416924 + (TG)n Simple_repeat Simple_repeat 2 34 0 198 0 0 0 chr4 195911489 195911511 -6416836 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1131 219 202 47 chr4 195911601 195912026 -6416321 + MLT1D LTR MaLR 13 503 -2 187 303 51 96 chr4 195913209 195913313 -6415034 + L2 LINE L2 2591 2685 -629 2318 116 0 0 chr4 195913313 195913614 -6414733 - AluSx SINE Alu -9 303 3 187 303 51 96 chr4 195913614 195913687 -6414660 + L2 LINE L2 2685 2760 -554 206 290 54 11 chr4 195913766 195913859 -6414488 - MIR SINE MIR -8 254 158 231 36 0 0 chr4 195914378 195914406 -6413941 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 315 279 67 10 chr4 195914419 195914523 -6413824 + MIR3 SINE MIR 99 208 0 1976 154 102 35 chr4 195914664 195915263 -6413084 + LTR8A LTR ERV1 1 727 0 1815 112 4 8 chr4 195915268 195915527 -6412820 - AluSc SINE Alu -16 293 36 2708 174 13 2 chr4 195915890 195916362 -6411985 + L1MB3 LINE L1 5685 6161 -22 1641 178 64 137 chr4 195916937 195917578 -6410769 - LTR49 LTR ERV1 -1 594 1 2224 112 0 0 chr4 195919731 195920034 -6408313 + AluSq SINE Alu 1 303 -10 3885 147 37 0 chr4 195920432 195921058 -6407289 + MER39B LTR ERV1 5 653 0 2124 128 0 0 chr4 195921184 195921480 -6406867 + AluSx SINE Alu 1 296 -16 198 374 49 45 chr4 195921701 195921966 -6406381 - L2 LINE L2 -606 2708 2443 2824 196 107 41 chr4 195922592 195923371 -6404976 + Tigger6b DNA MER2_type 113 942 -655 2075 184 98 37 chr4 195923368 195923448 -6404899 + Tigger6b DNA MER2_type 1079 1153 -444 * 1991 124 7 0 chr4 195923448 195923721 -6404626 + AluSx SINE Alu 1 275 -37 201 74 0 0 chr4 195923727 195923754 -6404593 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 2075 184 98 37 chr4 195923754 195924154 -6404193 + Tigger6b DNA MER2_type 1157 1596 -1 601 264 158 7 chr4 195924161 195924453 -6403894 + HAL1 LINE L1 1006 1341 -1166 1050 171 90 43 chr4 195924528 195924739 -6403608 + AluJo SINE Alu 6 226 -86 2251 267 87 25 chr4 195924776 195925685 -6402662 + HAL1 LINE L1 1427 2391 -116 21 0 0 0 chr4 195927332 195927353 -6400994 + AT_rich Low_complexity Low_complexity 1 21 0 35 0 0 0 chr4 195927398 195927433 -6400914 + AT_rich Low_complexity Low_complexity 1 35 0 2162 197 133 37 chr4 195928860 195928934 -6399413 - LTR48B LTR ERV1 0 644 578 2340 91 0 0 chr4 195928934 195929230 -6399117 + AluSx SINE Alu 1 296 -16 2162 197 133 37 chr4 195929230 195929743 -6398604 - LTR48B LTR ERV1 -66 578 1 2877 223 43 21 chr4 195929751 195930407 -6397940 - MER39 LTR ERV1 0 707 1 2366 87 3 0 chr4 195930436 195930745 -6397602 - AluSx SINE Alu -2 310 1 2755 203 43 82 chr4 195930804 195931684 -6396663 - MER39-int LTR ERV1 -170 6161 5316 * 3253 174 113 60 chr4 195931675 195932700 -6395647 - MER39-int LTR ERV1 -1127 5013 3779 522 248 30 73 chr4 195932793 195933027 -6395320 - MER39-int LTR ERV1 -1951 2929 2706 * 538 252 50 44 chr4 195933019 195933422 -6394925 - MER39-int LTR ERV1 -2934 2002 1713 458 192 0 0 chr4 195933562 195933635 -6394712 - LTR49-int LTR ERV1 -2995 3336 3264 1908 199 79 113 chr4 195933848 195934819 -6393528 - LTR1B LTR ERV1 0 1020 1 375 158 2 46 chr4 195934819 195934831 -6393516 - LTR49-int LTR ERV1 -3517 1419 1408 378 171 0 14 chr4 195934831 195934901 -6393446 - LTR57-int LTR ERVL -4246 1097 1029 2192 138 0 0 chr4 195935017 195935321 -6393026 + AluSx SINE Alu 1 304 -8 496 205 10 176 chr4 195935454 195935659 -6392688 + MER73 LTR ERVL 24 194 -450 294 259 0 0 chr4 195935662 195935720 -6392627 - MER31A LTR ERV1 -402 83 26 943 243 8 59 chr4 195935720 195936054 -6392293 - LTR49-int LTR ERV1 -3673 3332 751 826 249 114 122 chr4 195936360 195936487 -6391860 - LTR49-int LTR ERV1 -4100 2231 2104 2404 101 0 0 chr4 195936487 195936793 -6391554 + AluSx SINE Alu 1 306 -6 826 249 114 122 chr4 195936793 195937280 -6391067 - LTR49-int LTR ERV1 -4227 2104 1622 878 129 24 0 chr4 195937280 195937404 -6390943 + FLAM_C SINE Alu 1 127 -16 1581 45 0 0 chr4 195937536 195937714 -6390633 - AluY SINE Alu -133 178 1 2923 191 29 25 chr4 195937813 195938301 -6390046 - MER39 LTR ERV1 -3 704 212 1993 128 7 7 chr4 195938301 195938627 -6389720 - AluSg SINE Alu 0 310 1 2923 191 29 25 chr4 195938627 195938766 -6389581 - MER39 LTR ERV1 -495 212 75 1957 164 3 6 chr4 195939285 195939597 -6388750 - AluJo SINE Alu 0 312 2 905 154 0 0 chr4 195939818 195939961 -6388386 + AluJb SINE Alu 156 298 -14 447 260 48 103 chr4 195939963 195940236 -6388111 + L1ME2 LINE L1 1649 1906 -4490 634 100 0 11 chr4 195940247 195940337 -6388010 + AluSg/x SINE Alu 219 307 -2 5919 253 76 44 chr4 195940338 195940806 -6387541 + L1ME2 LINE L1 1914 2366 -3849 2339 91 0 10 chr4 195940806 195941114 -6387233 + AluSg SINE Alu 1 305 -5 5919 253 76 44 chr4 195941114 195941852 -6386495 + L1ME2 LINE L1 2366 3079 -3136 1958 138 0 26 chr4 195941852 195942156 -6386191 + AluSc SINE Alu 1 296 -13 5919 253 76 44 chr4 195942156 195943033 -6385314 + L1ME2 LINE L1 3079 3927 -2288 2126 122 0 31 chr4 195943033 195943353 -6384994 - AluSx SINE Alu -2 310 1 5919 253 76 44 chr4 195943353 195943724 -6384623 + L1ME2 LINE L1 3927 4285 -1930 2060 80 43 4 chr4 195943724 195944000 -6384347 + AluSp SINE Alu 26 312 -1 5919 253 76 44 chr4 195944000 195944572 -6383775 + L1ME2 LINE L1 4285 4999 -1216 3448 109 0 6 chr4 195944591 195945066 -6383281 + MER9 LTR ERVK 40 511 0 293 284 168 5 chr4 195945071 195945268 -6383079 + L1ME2 LINE L1 5007 5235 -980 745 140 0 0 chr4 195945268 195945368 -6382979 - FRAM SINE Alu -13 163 64 1777 201 9 62 chr4 195945368 195945806 -6382541 + L1ME2 LINE L1 5809 6223 -10 2332 160 10 10 chr4 195945832 195946232 -6382115 + MER57A LTR ERV1 1 400 -3 204 194 0 0 chr4 195946495 195946531 -6381816 + (CAT)n Simple_repeat Simple_repeat 2 37 0 1947 118 4 4 chr4 195946531 195946811 -6381536 - AluSc SINE Alu -29 280 1 1042 236 50 134 chr4 195947305 195947773 -6380574 - L1MEc LINE L1 -4332 1929 1532 1859 181 0 3 chr4 195947773 195948082 -6380265 - AluJb SINE Alu -4 308 1 1042 236 50 134 chr4 195948082 195948286 -6380061 - L1MEc LINE L1 -4729 1532 1313 913 184 0 0 chr4 195948292 195948444 -6379903 + AluSg/x SINE Alu 134 285 -27 304 287 54 23 chr4 195948453 195948550 -6379797 - L1MEc LINE L1 -4942 1319 1216 228 35 0 0 chr4 195948550 195948579 -6379768 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 304 287 54 23 chr4 195948579 195948610 -6379737 - L1MEc LINE L1 -5045 1216 1187 567 258 63 84 chr4 195948620 195948827 -6379520 - L1MEc LINE L1 -5006 1064 854 1136 167 24 16 chr4 195948827 195949073 -6379274 - L1MA9 LINE L1 -1 6311 6064 1725 157 0 99 chr4 195949082 195949258 -6379089 - AluJb SINE Alu -3 299 170 1272 49 0 27 chr4 195949258 195949442 -6378905 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1725 157 0 99 chr4 195949442 195949597 -6378750 - AluJb SINE Alu -132 170 1 567 258 63 84 chr4 195949597 195949683 -6378664 - L1MEc LINE L1 -5224 846 760 1369 146 31 18 chr4 195949683 195949909 -6378438 - L1PA16 LINE L1 -3 6163 5935 567 258 63 84 chr4 195949909 195950206 -6378141 - L1MEc LINE L1 -5310 760 527 2680 94 16 19 chr4 195950454 195950826 -6377521 - L1PA10 LINE L1 -4 6164 5794 246 359 7 28 chr4 195950868 195951013 -6377334 - L1MEc LINE L1 -5646 424 283 23 33 0 0 chr4 195951346 195951376 -6376971 + AT_rich Low_complexity Low_complexity 1 30 0 1525 197 23 16 chr4 195951592 195951896 -6376451 + AluJo SINE Alu 1 306 -6 280 277 44 36 chr4 195952743 195952880 -6375467 + MER20B DNA MER1_type 15 152 -631 2246 78 3 0 chr4 195952943 195953262 -6375085 + AluSq SINE Alu 1 320 0 324 244 93 0 chr4 195953655 195953741 -6374606 - MER5A DNA MER1_type -87 102 9 549 202 10 10 chr4 195953801 195953905 -6374442 - L2 LINE L2 -527 2787 2684 475 222 26 0 chr4 195953965 195954082 -6374265 - L1ME4a LINE L1 -29 6092 5973 519 333 80 28 chr4 195955163 195955412 -6372935 + L1MEd LINE L1 248 509 -5610 243 267 0 0 chr4 195956930 195956990 -6371357 + (AATTG)n Simple_repeat Simple_repeat 3 62 0 288 244 23 12 chr4 195957277 195957363 -6370984 + L2 LINE L2 3227 3313 0 248 227 193 42 chr4 195957707 195957826 -6370521 - MIR SINE MIR -96 166 30 200 277 118 34 chr4 195958039 195958158 -6370189 + MIR SINE MIR 111 239 -23 502 261 118 6 chr4 195958309 195958470 -6369877 + LTR16C LTR ERVL 282 460 -31 5009 137 30 20 chr4 195958470 195959338 -6369009 + L1PB4 LINE L1 5276 6152 -4 2479 212 36 13 chr4 195959398 195959930 -6368417 - MLT2B3 LTR ERVL 0 554 11 2262 120 0 0 chr4 195960464 195960764 -6367583 + AluSx SINE Alu 1 300 -12 193 266 16 47 chr4 195961393 195961457 -6366890 + MIR3 SINE MIR 14 75 -133 369 309 51 6 chr4 195961866 195962041 -6366306 - MLT1J2 LTR MaLR -218 232 50 2198 103 20 3 chr4 195962266 195962558 -6365789 - AluSx SINE Alu -15 297 1 498 281 89 31 chr4 195964497 195964827 -6363520 - MLT1J2 LTR MaLR -68 382 59 247 298 0 32 chr4 195966685 195966779 -6361568 - MIR SINE MIR -101 161 71 339 315 31 23 chr4 195967882 195968012 -6360335 + MIR SINE MIR 14 144 -118 5223 133 49 38 chr4 195968512 195968981 -6359366 - L1MA5A LINE L1 0 6297 5834 237 83 0 0 chr4 195968981 195969017 -6359330 + (TG)n Simple_repeat Simple_repeat 2 37 0 5223 133 49 38 chr4 195969017 195969149 -6359198 - L1MA5A LINE L1 -463 5834 5705 2000 148 0 20 chr4 195969149 195969447 -6358900 + AluSq SINE Alu 2 293 -20 5223 133 49 38 chr4 195969447 195969790 -6358557 - L1MA5A LINE L1 -592 5705 5342 526 211 0 0 chr4 195969792 195969896 -6358451 + AluSg/x SINE Alu 202 305 -7 7649 171 34 7 chr4 195969896 195971351 -6356996 - L1MA5A LINE L1 -801 5345 3852 846 317 37 42 chr4 195972125 195972645 -6355702 + MLT1K LTR MaLR 43 586 -2 286 367 69 48 chr4 195972977 195973353 -6354994 + L2 LINE L2 2868 3251 -21 2354 116 0 0 chr4 195973664 195973975 -6354372 - AluSq SINE Alu 0 313 3 2122 132 0 3 chr4 195974477 195974781 -6353566 + AluSx SINE Alu 1 303 -9 309 356 6 23 chr4 195976097 195976274 -6352073 - MER5B DNA MER1_type -4 174 1 216 97 0 0 chr4 195977008 195977039 -6351308 + (CA)n Simple_repeat Simple_repeat 2 32 0 203 61 30 0 chr4 195978846 195978879 -6349468 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 2250 75 14 7 chr4 195978881 195979162 -6349185 - AluSq SINE Alu -30 283 1 244 316 28 69 chr4 195979600 195979818 -6348529 - L2 LINE L2 -20 3293 3085 2273 105 3 0 chr4 195979949 195980244 -6348103 - AluSg SINE Alu -14 296 1 1051 118 0 39 chr4 195980254 195980432 -6347915 - AluSg/x SINE Alu 0 310 140 3573 157 36 6 chr4 195980434 195981076 -6347271 - MER39 LTR ERV1 -40 667 7 186 267 53 40 chr4 195981178 195981253 -6347094 - MIR SINE MIR -181 81 6 183 224 60 45 chr4 195981378 195981445 -6346902 + MIR3 SINE MIR 104 171 -37 2140 198 43 42 chr4 195981775 195982327 -6346020 - MER74A LTR ERVL 0 558 6 851 241 85 27 chr4 195982936 195983231 -6345116 - L2 LINE L2 0 3313 3002 250 309 11 0 chr4 195983240 195983334 -6345013 - L2 LINE L2 -2386 928 834 1274 116 63 0 chr4 195983444 195983634 -6344713 + LTR39 LTR ERV1 1 202 -581 1730 202 47 3 chr4 195983648 195983989 -6344358 + LTR39 LTR ERV1 428 783 0 1995 128 3 29 chr4 195986965 195987277 -6341070 + AluSx SINE Alu 1 304 -8 871 278 111 7 chr4 195987994 195988300 -6340047 + MER93a LTR ERV1 61 398 -4 561 212 8 8 chr4 195988300 195988418 -6339929 - L1PB4 LINE L1 -6 6150 6033 1553 274 52 45 chr4 195988770 195989351 -6338996 - HERVL74 LTR ERVL -598 5087 4503 2804 204 31 36 chr4 195989380 195990053 -6338294 + L1MB4 LINE L1 5470 6139 -41 1797 44 0 0 chr4 195990055 195990258 -6338089 + AluY SINE Alu 1 203 -108 877 164 16 44 chr4 195990611 195990794 -6337553 - L1MC5 LINE L1 -1111 6850 6673 2076 102 14 14 chr4 195990823 195991117 -6337230 - AluSx SINE Alu -18 294 1 2408 97 0 0 chr4 195991141 195991450 -6336897 - AluSc SINE Alu 0 309 1 1636 113 13 175 chr4 195991654 195992036 -6336311 + Tigger1 DNA MER2_type 1 320 -2098 1626 150 94 3 chr4 195992055 195992165 -6336182 + AluJb SINE Alu 1 100 -212 318 34 0 51 chr4 195992165 195992224 -6336123 + (CAAAA)n Simple_repeat Simple_repeat 5 60 0 1626 150 94 3 chr4 195992224 195992399 -6335948 + AluJb SINE Alu 100 312 0 298 143 0 0 chr4 195992407 195992456 -6335891 + Alu SINE Alu 253 301 -1 258 250 27 40 chr4 195992528 195992676 -6335671 + A-rich Low_complexity Low_complexity 5 150 0 2054 117 19 19 chr4 195993692 195994000 -6334347 + AluSx SINE Alu 5 312 0 25 0 0 0 chr4 195994000 195994025 -6334322 + AT_rich Low_complexity Low_complexity 1 25 0 249 300 70 0 chr4 195994486 195994586 -6333761 + L2 LINE L2 3139 3245 -27 1231 234 22 79 chr4 195994714 195994986 -6333361 + L1MCc LINE L1 17 257 -6166 2272 71 3 11 chr4 195994986 195995317 -6333030 + AluSg SINE Alu 1 329 0 1231 234 22 79 chr4 195995317 195995488 -6332859 + L1MCc LINE L1 257 436 -5987 232 314 25 25 chr4 195995517 195995638 -6332709 + L1MCc LINE L1 649 769 -5654 503 118 0 0 chr4 195995852 195995920 -6332427 - U4 snRNA snRNA -77 68 1 224 171 0 49 chr4 195996012 195996094 -6332253 + CT-rich Low_complexity Low_complexity 2 79 0 406 139 42 0 chr4 195996359 195996431 -6331916 + MER4D LTR ERV1 1 75 -828 696 74 21 0 chr4 195996431 195996526 -6331821 + MSTB LTR MaLR 1 97 -329 312 179 32 105 chr4 195996636 195996826 -6331521 + (CCCA)n Simple_repeat Simple_repeat 2 177 0 1132 282 37 51 chr4 195996833 195997378 -6330969 + HERVL74 LTR ERVL 5037 5670 -15 2262 203 9 2 chr4 195997386 195997840 -6330507 + MER74C LTR ERVL 2 458 -2 316 186 23 15 chr4 195997842 195997935 -6330412 - L1 LINE L1 -2183 4199 4109 2309 97 0 0 chr4 195997954 195998244 -6330103 - AluSx SINE Alu -22 290 1 2120 234 58 9 chr4 195998244 195998825 -6329522 - L1 LINE L1 -2249 4133 3524 4430 227 30 32 chr4 195998878 195999935 -6328412 - L1 LINE L1 -4184 2198 1140 267 54 0 0 chr4 195999935 195999972 -6328375 + (TA)n Simple_repeat Simple_repeat 2 38 0 4430 227 30 32 chr4 195999972 195999992 -6328355 - L1 LINE L1 -5242 1140 1121 2264 108 0 0 chr4 195999992 196000280 -6328067 - AluSx SINE Alu -16 296 9 4430 227 30 32 chr4 196000280 196000556 -6327791 - L1 LINE L1 -5261 1121 800 267 241 0 35 chr4 196000777 196000835 -6327512 - L1 LINE L1 -6085 228 173 21 57 0 0 chr4 196001598 196001633 -6326714 + AT_rich Low_complexity Low_complexity 1 35 0 3484 192 31 8 chr4 196001742 196002480 -6325867 - L1 LINE L1 -1004 5142 4388 3015 197 13 22 chr4 196002482 196003107 -6325240 + L1MA10 LINE L1 5713 6331 -3 2308 89 0 19 chr4 196003268 196003582 -6324765 + AluY SINE Alu 1 308 -3 1776 166 47 13 chr4 196003967 196004268 -6324079 - AluJo SINE Alu -1 311 1 210 220 20 0 chr4 196006897 196006947 -6321400 - MIR SINE MIR -211 51 1 297 75 0 0 chr4 196007251 196007291 -6321056 + (TTTTA)n Simple_repeat Simple_repeat 3 42 0 1614 184 0 11 chr4 196007296 196007574 -6320773 - AluJb SINE Alu -26 286 12 1595 186 31 10 chr4 196007604 196007895 -6320452 - AluJo SINE Alu -15 297 1 333 288 148 55 chr4 196007895 196008131 -6320216 - HAL1 LINE L1 -910 1597 1340 2011 170 36 36 chr4 196008966 196009193 -6319154 - MSTA LTR MaLR 0 428 199 2050 115 10 29 chr4 196009193 196009507 -6318840 - AluSx SINE Alu -4 308 1 2011 170 36 36 chr4 196009507 196009691 -6318656 - MSTA LTR MaLR -228 200 17 2309 84 3 13 chr4 196009834 196010133 -6318214 - AluSp SINE Alu -17 296 1 6085 122 36 17 chr4 196010828 196011779 -6316568 - LTR5 LTR ERVK 0 969 1 1861 100 0 0 chr4 196011921 196012162 -6316185 - AluSg SINE Alu -9 301 61 2551 85 131 5 chr4 196012163 196012561 -6315786 + LTR7 LTR ERV1 1 448 -2 3236 102 0 21 chr4 196012563 196013032 -6315315 + HERVH LTR ERV1 1 459 -7254 13344 99 5 23 chr4 196013085 196015319 -6313028 + HERVH LTR ERV1 793 2995 -4718 5739 119 2 3 chr4 196015298 196016153 -6312194 + HERVH LTR ERV1 3140 3993 -3720 * 4593 128 1 3 chr4 196016155 196016818 -6311529 + HERVH LTR ERV1 4488 5149 -2564 1361 139 19 0 chr4 196016819 196017035 -6311312 + HERVH LTR ERV1 5600 5819 -1894 2407 98 50 13 chr4 196017035 196017411 -6310936 + HERVH LTR ERV1 7324 7713 0 421 129 0 0 chr4 196017411 196017473 -6310874 + LTR7 LTR ERV1 1 62 -388 5654 123 49 13 chr4 196017573 196018506 -6309841 - Tigger3b DNA MER2_type -199 1032 66 1817 146 13 39 chr4 196018547 196018855 -6309492 + AluJo SINE Alu 1 300 -12 24 32 0 0 chr4 196018858 196018889 -6309458 + AT_rich Low_complexity Low_complexity 1 31 0 32 0 0 0 chr4 196019047 196019079 -6309268 + AT_rich Low_complexity Low_complexity 1 32 0 2298 96 0 0 chr4 196019081 196019405 -6308942 + AluSc SINE Alu 1 324 0 1228 172 17 0 chr4 196020810 196021042 -6307305 - L1MA5 LINE L1 0 6300 6065 220 238 48 0 chr4 196022470 196022533 -6305814 + MIR SINE MIR 85 150 -112 323 352 141 0 chr4 196022574 196022787 -6305560 + MIR SINE MIR 8 250 -12 2511 139 72 0 chr4 196022894 196023312 -6305035 - MER83 LTR ERV1 0 448 1 271 211 40 13 chr4 196023574 196023650 -6304697 - L1ME4a LINE L1 -81 6040 5963 27 49 0 0 chr4 196023738 196023779 -6304568 + AT_rich Low_complexity Low_complexity 1 41 0 2251 73 7 11 chr4 196023782 196024099 -6304248 - AluSq SINE Alu 0 316 1 1050 116 0 0 chr4 196024355 196024501 -6303846 + AluSg/x SINE Alu 162 307 -5 310 250 12 12 chr4 196024922 196025002 -6303345 - L2 LINE L2 -205 3067 2988 2449 91 0 0 chr4 196025152 196025459 -6302888 + AluSg SINE Alu 1 307 -3 1808 117 0 0 chr4 196027429 196027668 -6300679 - AluSx SINE Alu -13 299 61 24 32 0 0 chr4 196027716 196027747 -6300600 + AT_rich Low_complexity Low_complexity 1 31 0 2202 103 3 0 chr4 196029042 196029371 -6298976 - AluSx SINE Alu 0 312 1 26 30 0 0 chr4 196029963 196029996 -6298351 + AT_rich Low_complexity Low_complexity 1 33 0 663 91 131 0 chr4 196030000 196030099 -6298248 - MER51A LTR ERV1 0 634 523 2394 207 71 81 chr4 196030202 196030907 -6297440 - LTR8A LTR ERV1 0 727 30 1211 184 47 9 chr4 196030906 196031139 -6297208 + MSTB LTR MaLR 185 426 0 * 4860 138 16 36 chr4 196031139 196031512 -6296835 + MER4D LTR ERV1 71 450 -453 2466 83 3 0 chr4 196031512 196031812 -6296535 + AluY SINE Alu 1 301 -10 4860 138 16 36 chr4 196031812 196032277 -6296070 + MER4D LTR ERV1 450 892 -11 251 297 44 22 chr4 196032299 196032390 -6295957 + L2 LINE L2 3219 3311 -2 439 203 58 35 chr4 196033754 196033934 -6294413 + LTR48 LTR ERV1 11 284 -452 450 196 120 80 chr4 196033986 196034236 -6294111 + LTR48B LTR ERV1 385 644 0 270 273 13 0 chr4 196034346 196034423 -6293924 + GA-rich Low_complexity Low_complexity 1 78 0 4866 149 63 9 chr4 196034975 196035827 -6292520 - MER4D LTR ERV1 -5 898 1 2038 137 0 0 chr4 196036283 196036575 -6291772 - AluSx SINE Alu -20 292 1 24 0 0 0 chr4 196038506 196038530 -6289817 + AT_rich Low_complexity Low_complexity 1 24 0 2167 124 3 0 chr4 196038904 196039202 -6289145 + AluSx SINE Alu 1 299 -13 2256 136 83 5 chr4 196039307 196039703 -6288644 + MSTA LTR MaLR 1 427 -1 2320 146 68 19 chr4 196040146 196040571 -6287776 - MER83 LTR ERV1 0 448 3 1562 166 40 27 chr4 196041507 196041803 -6286544 + AluJo SINE Alu 1 300 -12 430 324 110 18 chr4 196042115 196042334 -6286013 - MIR SINE MIR -22 240 2 2225 98 0 3 chr4 196043428 196043734 -6284613 - AluSc SINE Alu 0 309 1 1100 71 0 21 chr4 196043734 196043871 -6284476 - AluSc SINE Alu -175 134 1 1643 252 97 8 chr4 196043986 196044521 -6283826 + L1ME2 LINE L1 5296 5878 -286 2118 112 0 0 chr4 196044522 196044798 -6283549 + AluSx SINE Alu 1 276 -36 2249 108 3 0 chr4 196045122 196045418 -6282929 + AluSp SINE Alu 1 297 -16 318 301 206 15 chr4 196045764 196045963 -6282384 + MIR SINE MIR 26 262 0 2818 37 3 14 chr4 196046108 196046457 -6281890 + L1PA4 LINE L1 5811 6155 0 1037 140 23 0 chr4 196046546 196046717 -6281630 + AluSq SINE Alu 137 311 -2 2312 85 14 0 chr4 196047087 196047380 -6280967 + AluSg SINE Alu 1 297 -13 235 329 139 32 chr4 196047424 196047530 -6280817 - MLT1L LTR MaLR -332 283 190 1215 192 111 11 chr4 196047530 196047827 -6280520 + AluJo SINE Alu 5 302 0 235 329 139 32 chr4 196047827 196047972 -6280375 - MLT1L LTR MaLR -425 190 5 188 328 31 0 chr4 196049405 196049469 -6278878 - L2 LINE L2 -2 3270 3205 2408 96 58 19 chr4 196050269 196050380 -6277967 - MER51B LTR ERV1 0 377 272 2476 78 0 3 chr4 196050380 196050686 -6277661 + AluSq SINE Alu 1 305 -8 2408 96 58 19 chr4 196050686 196050937 -6277410 - MER51B LTR ERV1 -105 272 1 1954 148 0 3 chr4 196051276 196051560 -6276787 + AluJb SINE Alu 12 294 -18 404 294 26 7 chr4 196051749 196051902 -6276445 + MER103 DNA DNA 2 157 -9 189 0 0 0 chr4 196053106 196053127 -6275220 + (GA)n Simple_repeat Simple_repeat 2 22 0 378 264 96 32 chr4 196053233 196053453 -6274894 + MER90 LTR ERV1 32 265 -310 2400 103 3 0 chr4 196053465 196053777 -6274570 - AluSq SINE Alu 0 313 1 633 220 95 18 chr4 196053821 196053989 -6274358 + MER90 LTR ERV1 434 614 0 2126 175 65 91 chr4 196054186 196054724 -6273623 + LTR8 LTR ERV1 1 524 -167 302 191 0 0 chr4 196054730 196054777 -6273570 + LTR8 LTR ERV1 642 688 -3 1648 196 11 0 chr4 196054777 196055053 -6273294 - AluJo SINE Alu -33 279 1 2025 197 93 68 chr4 196055105 196055265 -6273082 - LTR8 LTR ERV1 0 691 537 2424 88 0 7 chr4 196055265 196055571 -6272776 - AluSx SINE Alu -8 304 1 2025 197 93 68 chr4 196055571 196056084 -6272263 - LTR8 LTR ERV1 -154 537 1 1862 109 102 0 chr4 196056180 196056542 -6271805 - AluSp SINE Alu 0 391 1 812 276 55 41 chr4 196056566 196056859 -6271488 + LTR16A LTR ERVL 141 437 -13 1017 209 26 17 chr4 196057665 196057895 -6270452 - L1MB8 LINE L1 -1 6177 5946 459 140 140 11 chr4 196058514 196058607 -6269740 + MER51A LTR ERV1 1 105 -529 508 191 85 0 chr4 196058621 196058715 -6269632 + MER51B LTR ERV1 50 151 -226 501 64 9 46 chr4 196058865 196058974 -6269373 + (CACAC)n Simple_repeat Simple_repeat 1 105 0 185 300 129 0 chr4 196059133 196059203 -6269144 + MIR SINE MIR 174 252 -10 21 0 0 0 chr4 196059302 196059323 -6269024 + AT_rich Low_complexity Low_complexity 1 21 0 901 55 0 0 chr4 196061581 196061691 -6266656 - L1PA8 LINE L1 -8 6164 6055 356 319 29 7 chr4 196061780 196061918 -6266429 - MIR SINE MIR -70 192 52 378 241 89 44 chr4 196062231 196062434 -6265913 + LTR33 LTR ERVL 293 504 -17 186 43 0 0 chr4 196062480 196062503 -6265844 + (T)n Simple_repeat Simple_repeat 1 23 0 219 333 77 8 chr4 196062955 196063072 -6265275 - L2 LINE L2 -1 3271 3147 356 252 122 63 chr4 196063842 196064064 -6264283 - MIR SINE MIR 0 262 28 443 281 98 38 chr4 196065401 196065636 -6262711 + MIR SINE MIR 1 249 -13 2264 106 0 7 chr4 196066038 196066340 -6262007 + AluSg SINE Alu 1 300 -10 307 278 74 0 chr4 196067470 196067578 -6260769 + MIR SINE MIR 23 138 -124 2044 134 0 0 chr4 196068013 196068319 -6260028 - AluSx SINE Alu 0 306 1 182 298 0 53 chr4 196068398 196068455 -6259892 - L2 LINE L2 -22 3291 3238 303 269 211 18 chr4 196069920 196070091 -6258256 + MIR SINE MIR 46 249 -13 26 0 0 0 chr4 196071478 196071504 -6256843 + AT_rich Low_complexity Low_complexity 1 26 0 218 243 0 27 chr4 196072769 196072843 -6255504 + (TA)n Simple_repeat Simple_repeat 1 72 0 2292 103 0 13 chr4 196073025 196073336 -6255011 - AluSx SINE Alu -5 307 1 234 0 0 0 chr4 196073372 196073398 -6254949 + (CAG)n Simple_repeat Simple_repeat 3 28 0 2640 75 32 3 chr4 196073765 196074111 -6254236 - L1PA13 LINE L1 0 6163 5808 21 0 0 0 chr4 196074263 196074284 -6254063 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 196074878 196074906 -6253441 + AT_rich Low_complexity Low_complexity 1 28 0 1084 302 134 30 chr4 196075229 196075762 -6252585 - L2 LINE L2 -9 3304 2720 2489 279 51 20 chr4 196075762 196076598 -6251749 - L2 LINE L2 -700 2614 1753 264 122 0 0 chr4 196076600 196076641 -6251706 + (TG)n Simple_repeat Simple_repeat 2 42 0 930 317 86 16 chr4 196077667 196078483 -6249864 + L1ME4a LINE L1 958 1830 -4566 708 273 94 3 chr4 196078659 196078945 -6249402 + L1ME4a LINE L1 3337 3648 -2567 975 181 0 18 chr4 196078974 196079140 -6249207 + FRAM SINE Alu 1 163 -13 756 257 105 77 chr4 196079157 196079939 -6248408 + L1ME4a LINE L1 3700 4503 -1712 38071 53 1 3 chr4 196080065 196085603 -6242744 - L1PA5 LINE L1 -2 6152 623 710 85 0 0 chr4 196085601 196085695 -6242652 - L1PA5 LINE L1 -6048 98 5 * 1845 182 46 38 chr4 196085727 196085900 -6242447 - MLT2C2 LTR ERVL -88 376 206 2268 110 3 0 chr4 196085900 196086199 -6242148 - AluSq SINE Alu -13 300 1 1845 182 46 38 chr4 196086199 196086398 -6241949 - MLT2C2 LTR ERVL -258 206 1 1533 262 79 47 chr4 196086404 196086580 -6241767 + L1ME4a LINE L1 4511 4680 -1535 270 0 0 0 chr4 196086580 196086610 -6241737 + (TG)n Simple_repeat Simple_repeat 2 31 0 1533 262 79 47 chr4 196086610 196087151 -6241196 + L1ME4a LINE L1 4680 5259 -956 1790 151 166 17 chr4 196087151 196087495 -6240852 + MSTD LTR MaLR 2 396 0 1533 262 79 47 chr4 196087495 196087582 -6240765 + L1ME4a LINE L1 5259 5342 -873 1392 141 0 0 chr4 196087766 196087964 -6240383 + AluJb SINE Alu 86 283 -29 360 0 0 0 chr4 196087967 196088007 -6240340 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 635 259 35 26 chr4 196088029 196088474 -6239873 + L1ME4a LINE L1 5523 5986 -204 287 184 0 0 chr4 196088594 196088643 -6239704 + L1ME3A LINE L1 5871 5919 -251 783 213 75 12 chr4 196089742 196089941 -6238406 - L1PA16 LINE L1 0 6163 5959 185 274 145 0 chr4 196089941 196090003 -6238344 - MIR3 SINE MIR -52 156 86 200 329 43 0 chr4 196093233 196093303 -6235044 + MIR SINE MIR 154 226 -36 209 308 39 48 chr4 196093331 196093435 -6234912 - L2 LINE L2 -10 3262 3160 201 256 171 0 chr4 196093778 196093860 -6234487 + MIR SINE MIR 2 97 -165 538 247 34 7 chr4 196093961 196094107 -6234240 - L1MD3 LINE L1 -17 7978 7829 252 259 144 44 chr4 196097419 196097739 -6230608 + L1ME4a LINE L1 5765 6116 -5 270 299 212 34 chr4 196097855 196098119 -6230228 - L2 LINE L2 -1 3312 3002 246 307 209 19 chr4 196098190 196098405 -6229942 + L3 LINE CR1 1257 1512 -65 844 130 8 0 chr4 196098756 196098887 -6229460 - L1MB3 LINE L1 -1 6182 6051 372 395 19 25 chr4 196099031 196099188 -6229159 - L2 LINE L2 -2 3270 3115 203 282 127 27 chr4 196099800 196099910 -6228437 - L2 LINE L2 -1 3312 3192 525 287 59 80 chr4 196100002 196100389 -6227958 - L2 LINE L2 -1 3312 2934 208 393 47 0 chr4 196101782 196101889 -6226458 + MIR3 SINE MIR 46 157 -51 281 311 174 24 chr4 196102001 196102168 -6226179 + MIR SINE MIR 48 239 -23 279 253 0 0 chr4 196102237 196102332 -6226015 + (CA)n Simple_repeat Simple_repeat 2 96 0 492 263 0 0 chr4 196102343 196102522 -6225825 + (CA)n Simple_repeat Simple_repeat 2 180 0 234 171 79 0 chr4 196102530 196102606 -6225741 + (CATG)n Simple_repeat Simple_repeat 1 82 0 229 157 0 57 chr4 196102668 196102738 -6225609 + (CATA)n Simple_repeat Simple_repeat 3 68 0 329 356 0 0 chr4 196102751 196102866 -6225481 + (CA)n Simple_repeat Simple_repeat 2 116 0 393 345 29 29 chr4 196104205 196104414 -6223933 + MIR SINE MIR 29 237 -25 695 247 75 102 chr4 196105594 196106113 -6222234 - MLT1D LTR MaLR 0 505 1 2470 73 0 13 chr4 196106809 196107124 -6221223 + AluY SINE Alu 1 311 0 101 0 0 0 chr4 196107174 196107275 -6221072 + AT_rich Low_complexity Low_complexity 1 101 0 1477 216 20 0 chr4 196107309 196107614 -6220733 - L1MB5 LINE L1 0 6174 5864 2189 143 74 3 chr4 196109144 196109508 -6218839 - MLT1B LTR MaLR 0 390 1 235 298 57 57 chr4 196109885 196110043 -6218304 - MER5A DNA MER1_type -1 188 31 2321 104 0 16 chr4 196110508 196110825 -6217522 - AluSx SINE Alu 0 312 1 2326 88 0 3 chr4 196111001 196111298 -6217049 - AluSc SINE Alu -13 296 1 471 35 0 0 chr4 196111343 196111400 -6216947 + (CA)n Simple_repeat Simple_repeat 2 58 0 371 331 52 0 chr4 196111691 196111827 -6216520 - MIR3 SINE MIR -9 199 57 553 150 21 21 chr4 196115004 196115144 -6213203 + CT-rich Low_complexity Low_complexity 2 141 0 1027 177 52 16 chr4 196115237 196115469 -6212878 - AluJb SINE Alu -27 285 87 327 313 74 40 chr4 196115958 196116255 -6212092 - L2 LINE L2 -40 3273 2967 882 240 116 50 chr4 196116292 196116654 -6211693 - MLT1E2 LTR MaLR -177 449 64 248 0 31 0 chr4 196116961 196116993 -6211354 + (TTG)n Simple_repeat Simple_repeat 2 34 0 262 304 81 14 chr4 196117296 196117444 -6210903 + L3 LINE CR1 1219 1376 -201 21 0 0 0 chr4 196117494 196117515 -6210832 + AT_rich Low_complexity Low_complexity 1 21 0 1092 230 9 0 chr4 196117622 196117835 -6210512 - MER58A DNA MER1_type -6 218 4 195 164 66 49 chr4 196117848 196117909 -6210438 + L3 LINE CR1 1503 1564 -13 1031 171 97 0 chr4 196118168 196118308 -6210039 - L1MA9 LINE L1 0 6312 6142 291 54 0 0 chr4 196118308 196118345 -6210002 + (TG)n Simple_repeat Simple_repeat 1 37 0 1031 171 97 0 chr4 196118345 196118421 -6209926 - L1MA9 LINE L1 -170 6142 6075 2140 160 42 29 chr4 196118421 196118968 -6209379 - MLT2A2 LTR ERVL 0 554 1 8436 84 4 8 chr4 196118968 196120069 -6208278 - HERVL-A2 LTR ERVL 0 5654 4559 804 181 12 6 chr4 196120069 196120229 -6208118 - L1MA9 LINE L1 -230 6082 5922 7048 224 65 32 chr4 196120237 196122548 -6205799 - L1 LINE L1 -2234 5331 3096 1713 176 38 22 chr4 196122548 196122917 -6205430 + THE1C LTR MaLR 1 375 0 9387 129 31 38 chr4 196122920 196124507 -6203840 + THE1C-int LTR MaLR 4 1580 0 1615 145 100 56 chr4 196124507 196124866 -6203481 + THE1C LTR MaLR 1 375 0 7048 224 65 32 chr4 196124866 196125098 -6203249 - L1 LINE L1 -4470 3095 2872 2329 92 0 32 chr4 196125098 196125412 -6202935 - AluY SINE Alu -7 304 1 7048 224 65 32 chr4 196125412 196126248 -6202099 - L1 LINE L1 -4693 2872 2023 2133 248 60 48 chr4 196126250 196127054 -6201293 - L1 LINE L1 -5896 1600 473 318 330 16 36 chr4 196129182 196129376 -6198971 - L1ME LINE L1 -425 5696 5507 230 304 29 65 chr4 196129428 196129566 -6198781 + MLT1K LTR MaLR 47 179 -409 559 259 91 30 chr4 196129660 196129892 -6198455 + MLT1K LTR MaLR 326 571 -17 302 283 123 31 chr4 196129899 196130108 -6198239 - L1ME LINE L1 -621 5500 5283 207 189 0 0 chr4 196130244 196130281 -6198066 + (CAT)n Simple_repeat Simple_repeat 2 38 0 255 224 102 20 chr4 196131243 196131341 -6197006 + MIR SINE MIR 21 126 -82 21 0 0 0 chr4 196131747 196131768 -6196579 + AT_rich Low_complexity Low_complexity 1 21 0 314 297 51 8 chr4 196132067 196132185 -6196162 + MER5A DNA MER1_type 19 141 -48 224 220 20 0 chr4 196132501 196132551 -6195796 + (TG)n Simple_repeat Simple_repeat 2 52 0 2234 94 0 0 chr4 196132613 196132890 -6195457 - AluSg SINE Alu -32 278 2 1126 181 18 49 chr4 196134086 196134312 -6194035 + MER20 DNA MER1_type 1 219 0 2664 17 10 0 chr4 196135529 196135824 -6192523 + AluY SINE Alu 1 298 -13 2260 93 0 0 chr4 196136770 196137087 -6191260 - AluSg SINE Alu 0 317 1 22 35 0 0 chr4 196137091 196137120 -6191227 + AT_rich Low_complexity Low_complexity 1 29 0 645 195 0 0 chr4 196137361 196137484 -6190863 - L1PB4 LINE L1 -2 6154 6032 242 29 29 0 chr4 196137584 196137619 -6190728 + (TG)n Simple_repeat Simple_repeat 2 37 0 317 318 52 7 chr4 196137828 196137982 -6190365 - MIR SINE MIR -10 252 92 1163 186 69 45 chr4 196140575 196140822 -6187525 - AluJo SINE Alu -30 282 30 2292 96 0 20 chr4 196140841 196141142 -6187205 - AluSq SINE Alu -18 295 1 22 35 0 0 chr4 196141146 196141175 -6187172 + AT_rich Low_complexity Low_complexity 1 29 0 861 202 5 25 chr4 196141416 196141614 -6186733 - L1PB4 LINE L1 -2 6154 5961 1798 195 86 51 chr4 196142140 196142628 -6185719 + MLT1D LTR MaLR 1 505 0 709 68 0 0 chr4 196143458 196143546 -6184801 - AluS SINE Alu -223 89 2 1840 213 28 19 chr4 196144113 196144583 -6183764 - L1 LINE L1 -2935 3211 2738 2390 72 0 13 chr4 196144673 196144979 -6183368 + AluY SINE Alu 1 302 -9 22 0 0 0 chr4 196145248 196145270 -6183077 + AT_rich Low_complexity Low_complexity 1 22 0 235 300 62 46 chr4 196146527 196146657 -6181690 + MIR SINE MIR 129 260 -2 2122 87 0 0 chr4 196147095 196147370 -6180977 + AluY SINE Alu 1 275 -36 1404 227 106 19 chr4 196147740 196148154 -6180193 - MLT1C LTR MaLR -8 459 10 1938 103 0 0 chr4 196148251 196148550 -6179797 - AluSp SINE Alu 0 331 33 2525 43 13 3 chr4 196148826 196149125 -6179222 - AluY SINE Alu -9 302 1 1491 105 90 47 chr4 196150345 196150622 -6177725 - AluJo SINE Alu -23 289 1 39 38 0 0 chr4 196151320 196151373 -6176974 + GC_rich Low_complexity Low_complexity 1 53 0 21 36 0 0 chr4 196152035 196152063 -6176284 + GC_rich Low_complexity Low_complexity 1 28 0 2466 64 0 16 chr4 196153246 196153557 -6174790 + AluY SINE Alu 1 306 -5 1627 157 35 35 chr4 196154012 196154299 -6174048 - AluJb SINE Alu -25 287 1 2611 44 0 0 chr4 196155431 196155727 -6172620 - AluY SINE Alu -15 296 1 264 367 56 28 chr4 196156045 196156225 -6172122 + MIR SINE MIR 14 198 -64 185 262 0 0 chr4 196156710 196156752 -6171595 + L2 LINE L2 3230 3271 -1 43365 34 22 1 chr4 196156976 196163000 -6165347 - L1PA2 LINE L1 -1 6154 1 962 101 0 29 chr4 196163175 196163313 -6165034 - AluSc SINE Alu -14 295 162 403 278 68 71 chr4 196163503 196163755 -6164592 + MIR SINE MIR 7 257 -5 736 221 145 24 chr4 196164866 196165155 -6163192 + MER5C DNA MER1_type 1 324 0 282 342 77 0 chr4 196166771 196166926 -6161421 - MIR SINE MIR -54 208 42 2450 83 0 6 chr4 196167092 196167404 -6160943 + AluSg SINE Alu 1 310 0 1961 129 52 0 chr4 196168932 196169218 -6159129 + AluSg SINE Alu 1 301 -9 2816 20 0 0 chr4 196169218 196169523 -6158824 + AluY SINE Alu 1 305 -6 180 0 0 0 chr4 196169557 196169577 -6158770 + (CAA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr4 196170467 196170488 -6157859 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr4 196170904 196170937 -6157410 + (CA)n Simple_repeat Simple_repeat 1 33 0 1997 84 0 0 chr4 196171655 196171892 -6156455 - AluSq SINE Alu -76 237 1 224 253 152 13 chr4 196172387 196172466 -6155881 + MIR SINE MIR 51 140 -68 1707 176 0 4 chr4 196172551 196172830 -6155517 - AluJb SINE Alu -28 284 7 22 0 0 0 chr4 196174939 196174961 -6153386 + GC_rich Low_complexity Low_complexity 1 22 0 209 119 0 24 chr4 196174973 196175015 -6153332 + (CCCCCG)n Simple_repeat Simple_repeat 6 46 0 25 31 0 0 chr4 196175032 196175064 -6153283 + GC_rich Low_complexity Low_complexity 1 32 0 293 293 19 13 chr4 196175069 196175226 -6153121 + C-rich Low_complexity Low_complexity 1 158 0 2017 90 61 4 chr4 196176116 196176394 -6151953 + AluSx SINE Alu 11 304 -8 227 231 0 19 chr4 196176495 196176547 -6151800 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 802 168 0 7 chr4 196176650 196176787 -6151560 + FLAM_C SINE Alu 6 141 -2 360 230 30 67 chr4 196176843 196176978 -6151369 - MIR SINE MIR -56 206 77 1218 239 166 31 chr4 196176996 196177485 -6150862 - MLT1H1 LTR MaLR 0 555 1 990 151 91 0 chr4 196178446 196178678 -6149669 - Charlie5 DNA MER1_type 0 2624 2372 1595 83 58 8 chr4 196178694 196178935 -6149412 + L1P4 LINE L1 5254 5506 -662 634 167 31 135 chr4 196178935 196179127 -6149220 + MLT2B1 LTR ERVL 349 520 0 1136 194 128 29 chr4 196179366 196179639 -6148708 + AluJb SINE Alu 1 300 -2 196 348 80 7 chr4 196179730 196179868 -6148479 + MIR SINE MIR 41 188 -74 3062 196 84 42 chr4 196180119 196180219 -6148128 + L1MC3 LINE L1 6644 6738 -1047 1744 160 20 105 chr4 196180219 196180618 -6147729 - MLT1A1 LTR MaLR 0 365 1 3062 196 84 42 chr4 196180618 196180906 -6147441 + L1MC3 LINE L1 6738 7013 -772 195 42 0 0 chr4 196180906 196180930 -6147417 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 3062 196 84 42 chr4 196180930 196181430 -6146917 + L1MC3 LINE L1 7013 7578 -207 386 193 123 53 chr4 196181441 196181670 -6146677 + MLT2D LTR ERVL 102 373 -40 413 171 12 0 chr4 196181753 196181835 -6146512 + L1MC3 LINE L1 7585 7667 -118 229 114 114 0 chr4 196181845 196181889 -6146458 + L1MC3 LINE L1 7736 7784 -1 39 38 0 0 chr4 196182043 196182096 -6146251 + AT_rich Low_complexity Low_complexity 1 53 0 397 349 20 0 chr4 196182866 196182917 -6145430 - MIR SINE MIR -7 255 207 705 24 0 0 chr4 196182917 196183000 -6145347 + (GA)n Simple_repeat Simple_repeat 2 84 0 397 349 20 0 chr4 196183000 196183094 -6145253 - MIR SINE MIR -55 207 107 285 231 26 0 chr4 196183472 196183550 -6144797 + MER116 DNA Mariner 1 80 0 27 57 0 29 chr4 196184361 196184397 -6143950 + AT_rich Low_complexity Low_complexity 1 36 -32 2194 108 0 0 chr4 196184397 196184683 -6143664 - AluSg SINE Alu -24 286 1 27 57 0 29 chr4 196184683 196184716 -6143631 + AT_rich Low_complexity Low_complexity 36 68 0 831 207 5 25 chr4 196184957 196185155 -6143192 - L1PB4 LINE L1 -2 6154 5961 1798 195 86 51 chr4 196185681 196186169 -6142178 + MLT1D LTR MaLR 1 505 0 2161 79 72 9 chr4 196189111 196189478 -6138869 - LTR7 LTR ERV1 0 450 1 2863 104 7 11 chr4 196189478 196189911 -6138436 - HERVH LTR ERV1 0 7713 7283 7269 128 9 6 chr4 196189915 196191156 -6137191 - HERVH LTR ERV1 -1290 5364 3840 * 14572 120 5 40 chr4 196191147 196194372 -6133975 - HERVH LTR ERV1 -4112 3601 1 2184 89 78 8 chr4 196194372 196194740 -6133607 - LTR7 LTR ERV1 0 450 1 4098 209 53 30 chr4 196194974 196195121 -6133226 - L1MB7 LINE L1 -17 6167 6025 2382 89 0 16 chr4 196195121 196195437 -6132910 + AluY SINE Alu 1 311 0 4098 209 53 30 chr4 196195437 196196855 -6131492 - L1MB7 LINE L1 -159 6025 4558 317 290 6 25 chr4 196199603 196199765 -6128582 + (CCA)n Simple_repeat Simple_repeat 1 159 0 222 235 7 23 chr4 196200382 196200686 -6127661 + (CCA)n Simple_repeat Simple_repeat 1 298 0 457 300 76 14 chr4 196200887 196201097 -6127250 + MIR SINE MIR 29 251 -11 32 0 0 0 chr4 196201735 196201767 -6126580 + AT_rich Low_complexity Low_complexity 1 32 0 2235 100 10 0 chr4 196201767 196202056 -6126291 - AluSx SINE Alu -20 292 1 477 232 96 82 chr4 196203122 196203202 -6125145 + MIR SINE MIR 8 85 -177 1656 145 0 24 chr4 196203202 196203457 -6124890 + AluJo SINE Alu 1 249 -63 477 232 96 82 chr4 196203457 196203596 -6124751 + MIR SINE MIR 85 230 -32 210 118 0 0 chr4 196204887 196204921 -6123426 + (TC)n Simple_repeat Simple_repeat 1 34 0 207 0 0 0 chr4 196204921 196204944 -6123403 + (TG)n Simple_repeat Simple_repeat 2 24 0 29 28 0 0 chr4 196205075 196205111 -6123236 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr4 196205441 196205465 -6122882 + AT_rich Low_complexity Low_complexity 1 24 0 291 28 0 0 chr4 196205663 196205699 -6122648 + (TG)n Simple_repeat Simple_repeat 2 37 0 647 146 10 10 chr4 196205725 196205828 -6122519 + AluJb SINE Alu 32 134 -178 1664 146 38 31 chr4 196206871 196207158 -6121189 + AluJb SINE Alu 1 289 -23 288 0 0 0 chr4 196207192 196207224 -6121123 + (TAG)n Simple_repeat Simple_repeat 1 32 0 2257 85 4 0 chr4 196207225 196207506 -6120841 - AluY SINE Alu -29 282 1 3213 103 97 12 chr4 196207767 196208253 -6120094 - MER1A DNA MER1_type 0 527 1 295 328 74 0 chr4 196209200 196209322 -6119025 - MIR SINE MIR -58 150 20 1049 185 18 40 chr4 196209415 196209637 -6118710 + MER20 DNA MER1_type 3 219 0 2612 54 0 13 chr4 196209682 196209997 -6118350 + AluY SINE Alu 1 311 0 2433 143 62 17 chr4 196210074 196210544 -6117803 - L1MA4A LINE L1 -1 6302 5812 2799 149 108 75 chr4 196210724 196211363 -6116984 + MER4A LTR ERV1 3 662 -2 1520 181 50 4 chr4 196211636 196211913 -6116434 + AluJo SINE Alu 1 290 -22 1897 99 10 79 chr4 196213128 196213515 -6114832 + AluSx SINE Alu 1 366 0 23 0 0 0 chr4 196213942 196213965 -6114382 + AT_rich Low_complexity Low_complexity 1 23 0 649 214 51 157 chr4 196215969 196215996 -6112351 + L1M4 LINE L1 2654 2682 -3464 1857 168 40 0 chr4 196215996 196216324 -6112023 - MER2 DNA MER2_type 0 344 4 649 214 51 157 chr4 196216324 196216902 -6111445 + L1M4 LINE L1 2682 3195 -2951 1294 251 77 72 chr4 196216903 196217155 -6111192 + L1M4 LINE L1 3622 3871 -2275 2873 161 28 17 chr4 196217155 196217697 -6110650 + L1MB3 LINE L1 5634 6181 -2 1294 251 77 72 chr4 196217697 196218137 -6110210 + L1M4 LINE L1 3871 4317 -1829 302 245 117 11 chr4 196218205 196218299 -6110048 - MER2 DNA MER2_type -16 329 226 820 226 0 0 chr4 196218318 196218482 -6109865 - L1PB4 LINE L1 0 6156 5993 1788 144 0 48 chr4 196218629 196218921 -6109426 - AluJo SINE Alu -30 282 5 28 61 0 0 chr4 196220038 196220087 -6108260 + AT_rich Low_complexity Low_complexity 1 49 0 269 216 144 10 chr4 196220167 196220264 -6108083 - L1MC4 LINE L1 -123 7919 7810 355 221 39 48 chr4 196220550 196220654 -6107693 - MER58 DNA MER1_type 0 2420 2318 241 311 0 66 chr4 196220666 196220772 -6107575 - MER58 DNA MER1_type -2321 99 1 1748 163 0 0 chr4 196221379 196221649 -6106698 - AluJb SINE Alu -19 293 24 2438 75 0 13 chr4 196223128 196223434 -6104913 + AluSx SINE Alu 1 302 -10 2325 92 3 10 chr4 196224502 196224808 -6103539 - AluSx SINE Alu -8 304 1 27 0 0 0 chr4 196224810 196224837 -6103510 + AT_rich Low_complexity Low_complexity 1 27 0 3088 151 21 21 chr4 196224847 196225369 -6102978 - L1PB4 LINE L1 -13 6143 5622 1654 185 3 3 chr4 196225716 196226018 -6102329 - AluJb SINE Alu -10 302 1 369 254 0 91 chr4 196226297 196226407 -6101940 - L2 LINE L2 -2 3311 3212 922 288 158 19 chr4 196226409 196226840 -6101507 - L2 LINE L2 -726 2588 2098 914 164 6 82 chr4 196226982 196227022 -6101325 - MER3 DNA MER1_type -35 127 86 2343 78 3 3 chr4 196227022 196227317 -6101030 + AluSg SINE Alu 1 295 -15 914 164 6 82 chr4 196227317 196227459 -6100888 - MER3 DNA MER1_type -76 86 6 1915 148 26 19 chr4 196228766 196229076 -6099271 - AluJo SINE Alu 0 312 1 384 176 98 29 chr4 196230968 196231070 -6097277 + MER5A DNA MER1_type 4 112 -77 390 147 0 0 chr4 196231124 196231192 -6097155 + (TG)n Simple_repeat Simple_repeat 2 69 0 683 217 46 0 chr4 196231576 196231728 -6096619 - MER5A DNA MER1_type -30 159 1 222 37 0 0 chr4 196232548 196232575 -6095772 + (TG)n Simple_repeat Simple_repeat 2 28 0 1684 193 0 7 chr4 196232590 196232891 -6095456 + AluJo SINE Alu 1 299 -13 488 115 0 11 chr4 196233247 196233334 -6095013 + (TG)n Simple_repeat Simple_repeat 2 87 0 2161 113 0 3 chr4 196234896 196235198 -6093149 - AluY SINE Alu -10 301 1 2032 128 0 0 chr4 196235236 196235509 -6092838 + AluSx SINE Alu 11 283 -29 2413 244 34 20 chr4 196237020 196237664 -6090683 - MER82 DNA MER2_type 0 653 1 687 213 86 0 chr4 196237897 196238071 -6090276 - MER5A DNA MER1_type 0 189 1 3534 170 55 23 chr4 196238879 196239107 -6089240 + L1MB4 LINE L1 5445 5664 -516 1770 166 3 3 chr4 196239107 196239396 -6088951 + AluJo SINE Alu 1 289 -23 3534 170 55 23 chr4 196239396 196239872 -6088475 + L1MB4 LINE L1 5664 6172 -8 307 222 148 69 chr4 196239876 196240092 -6088255 + HsTC2 DNA Tc2 1269 1501 -397 * 391 162 9 124 chr4 196240090 196240167 -6088180 - MLT1A2 LTR MaLR -281 93 29 2725 131 82 0 chr4 196240167 196240595 -6087752 + MER4C LTR ERV1 1 463 -2 391 162 9 124 chr4 196240595 196240622 -6087725 - MLT1A2 LTR MaLR -345 29 1 307 286 31 0 chr4 196240666 196240764 -6087583 - L1M4 LINE L1 -1299 4847 4747 291 133 0 0 chr4 196240785 196240830 -6087517 + LTR54 LTR ERV1 466 510 0 739 268 66 60 chr4 196241177 196241469 -6086878 - L1M4 LINE L1 -960 5186 4889 1211 196 59 95 chr4 196241469 196241704 -6086643 - MLT1A2 LTR MaLR 0 374 157 2249 113 0 0 chr4 196241704 196241997 -6086350 - AluSx SINE Alu -19 293 1 1211 196 59 95 chr4 196241997 196242149 -6086198 - MLT1A2 LTR MaLR -217 157 1 739 268 66 60 chr4 196242149 196242293 -6086054 - L1M4 LINE L1 -1257 4889 4747 1478 156 74 15 chr4 196242404 196242673 -6085674 + AluJb SINE Alu 1 285 -27 198 0 0 0 chr4 196242747 196242769 -6085578 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 279 0 0 0 chr4 196242768 196242799 -6085548 + (GA)n Simple_repeat Simple_repeat 2 32 0 496 270 45 38 chr4 196243047 196243314 -6085033 - L1M4 LINE L1 -3662 2484 2216 579 238 5 0 chr4 196243839 196244289 -6084058 + (CA)n Simple_repeat Simple_repeat 1 452 0 21 0 0 0 chr4 196244578 196244599 -6083748 + AT_rich Low_complexity Low_complexity 1 21 0 2128 130 7 0 chr4 196244774 196245075 -6083272 + AluSq SINE Alu 1 303 -10 1984 143 0 7 chr4 196245075 196245376 -6082971 + AluSq SINE Alu 1 299 -14 426 303 97 0 chr4 196245757 196245942 -6082405 + MER63A DNA MER1_type 1 203 -7 2669 203 38 41 chr4 196246190 196246746 -6081601 - MLT2B3 LTR ERVL 0 554 1 291 267 11 11 chr4 196247362 196247452 -6080895 - MIR SINE MIR -8 254 165 7487 41 1 1 chr4 196247943 196248800 -6079547 + L1PA5 LINE L1 5298 6154 0 844 266 95 54 chr4 196249232 196249676 -6078671 - LTR40b LTR ERVL 0 462 1 657 265 103 59 chr4 196250411 196250917 -6077430 - L1MC4 LINE L1 -30 8012 7485 29 47 0 0 chr4 196251571 196251614 -6076733 + AT_rich Low_complexity Low_complexity 1 43 0 578 198 43 68 chr4 196253074 196253236 -6075111 + AluSg/x SINE Alu 130 287 -23 233 164 0 18 chr4 196253236 196253291 -6075056 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 2359 79 0 25 chr4 196253539 196253855 -6074492 - AluY SINE Alu -3 308 1 26 0 0 0 chr4 196254791 196254817 -6073530 + AT_rich Low_complexity Low_complexity 1 26 0 2345 108 0 0 chr4 196255326 196255623 -6072724 - AluSg SINE Alu -13 297 1 389 264 56 28 chr4 196255628 196255772 -6072575 - L2 LINE L2 -15 3298 3151 760 236 102 52 chr4 196256546 196256891 -6071456 - L1ME LINE L1 -371 5795 5402 2133 79 9 67 chr4 196258145 196258473 -6069874 + AluSc SINE Alu 1 309 0 381 58 0 0 chr4 196258889 196258941 -6069406 + (TG)n Simple_repeat Simple_repeat 2 53 0 1899 54 0 0 chr4 196258978 196259199 -6069148 + AluY SINE Alu 1 221 -90 299 45 0 0 chr4 196259199 196259243 -6069104 + AluY SINE Alu 257 300 0 320 300 44 40 chr4 196259337 196259597 -6068750 - MLT1C LTR MaLR 0 467 131 2228 85 4 4 chr4 196260366 196260697 -6067650 + AluSc SINE Alu 1 331 0 1116 189 37 84 chr4 196260704 196261000 -6067347 + L1PA16 LINE L1 5885 6166 0 1576 107 0 23 chr4 196261262 196261477 -6066870 - AluSg/x SINE Alu -20 292 83 690 177 8 15 chr4 196261632 196261762 -6066585 + FLAM_A SINE Alu 13 141 -1 229 278 181 21 chr4 196261953 196262097 -6066250 - MIR3 SINE MIR -12 196 30 400 192 35 37 chr4 196263418 196263749 -6064598 + (CA)n Simple_repeat Simple_repeat 1 330 0 234 170 27 27 chr4 196263760 196263872 -6064475 + (CA)n Simple_repeat Simple_repeat 2 113 0 565 183 26 0 chr4 196265298 196265413 -6062934 - LTR47A LTR ERVL 0 452 335 2059 109 14 0 chr4 196265447 196265869 -6062478 - AluSc SINE Alu 0 426 1 1097 214 150 11 chr4 196266297 196266651 -6061696 + L1MD3 LINE L1 6891 7509 -486 572 199 64 13 chr4 196266653 196266809 -6061538 - L1MB7 LINE L1 -2 6182 6019 6161 204 65 36 chr4 196266810 196269510 -6058837 - L1MB7 LINE L1 -225 5953 3174 358 152 15 0 chr4 196269888 196269954 -6058393 - L1M4 LINE L1 -1408 4738 4672 350 281 78 8 chr4 196269954 196270082 -6058265 - MIR SINE MIR -114 148 12 1022 259 23 0 chr4 196270086 196270302 -6058045 + MER58A DNA MER1_type 2 222 -2 198 224 35 0 chr4 196270414 196270499 -6057848 + (TA)n Simple_repeat Simple_repeat 2 89 0 255 303 157 61 chr4 196271807 196272212 -6056135 + L2 LINE L2 2830 3262 -10 755 218 106 6 chr4 196272618 196272797 -6055550 + MER3 DNA MER1_type 1 197 -12 186 118 0 0 chr4 196273093 196273127 -6055220 + (CA)n Simple_repeat Simple_repeat 2 35 0 329 267 139 32 chr4 196274337 196274692 -6053655 - LTR16A LTR ERVL -5 445 19 737 244 87 0 chr4 196274858 196275030 -6053317 - MER5A DNA MER1_type 0 189 3 562 308 72 23 chr4 196275179 196275400 -6052947 + MIR SINE MIR 13 244 -18 2260 103 0 0 chr4 196275618 196275918 -6052429 + AluSq SINE Alu 1 300 -13 1471 171 72 48 chr4 196275918 196276215 -6052132 - L1MC/D LINE L1 -743 5403 5178 5025 101 5 3 chr4 196276215 196276888 -6051459 - L1PA15 LINE L1 -2 6163 5490 1471 171 72 48 chr4 196276888 196277094 -6051253 - L1MC/D LINE L1 -968 5178 4978 602 184 6 31 chr4 196277701 196277864 -6050483 + CT-rich Low_complexity Low_complexity 2 160 0 413 340 86 10 chr4 196277967 196278176 -6050171 - MIR SINE MIR -2 260 36 2133 109 7 0 chr4 196278501 196278795 -6049552 + AluSp SINE Alu 1 296 -17 1717 163 21 14 chr4 196279637 196279926 -6048421 + AluJo SINE Alu 1 291 -21 376 186 57 7 chr4 196279926 196280208 -6048139 + (TA)n Simple_repeat Simple_repeat 1 296 0 369 0 0 0 chr4 196280510 196280551 -6047796 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 215 295 18 18 chr4 196280564 196280676 -6047671 + (CATATA)n Simple_repeat Simple_repeat 2 113 0 219 298 0 0 chr4 196280703 196280760 -6047587 + GA-rich Low_complexity Low_complexity 4 60 0 241 246 0 29 chr4 196280771 196280840 -6047507 + L1ME4a LINE L1 5973 6039 -82 21 0 0 0 chr4 196280980 196281001 -6047346 + AT_rich Low_complexity Low_complexity 1 21 0 2013 224 57 20 chr4 196281032 196281527 -6046820 + L1MC2 LINE L1 1 513 -5913 * 4867 181 56 74 chr4 196281524 196282217 -6046130 + L1MC2 LINE L1 4920 5624 -1000 2092 94 0 4 chr4 196282217 196282492 -6045855 - AluY SINE Alu -14 297 24 4867 181 56 74 chr4 196282492 196283073 -6045274 + L1MC2 LINE L1 5624 6214 -410 2256 102 0 0 chr4 196283073 196283368 -6044979 + AluSg SINE Alu 16 310 0 4867 181 56 74 chr4 196283368 196283476 -6044871 + L1MC2 LINE L1 6214 6322 -302 2378 88 0 7 chr4 196283476 196283773 -6044574 + AluSp SINE Alu 1 295 -18 4867 181 56 74 chr4 196283773 196284136 -6044211 + L1MC2 LINE L1 6322 6622 -2 215 290 50 40 chr4 196284355 196284455 -6043892 + L3 LINE CR1 1374 1474 -103 291 315 72 35 chr4 196284674 196284873 -6043474 - MIR3 SINE MIR 0 208 1 338 303 28 9 chr4 196285216 196285325 -6043022 - MIR SINE MIR -62 146 36 22 56 0 0 chr4 196285433 196285469 -6042878 + AT_rich Low_complexity Low_complexity 1 36 0 379 293 132 49 chr4 196285671 196286344 -6042003 - L1ME3 LINE L1 -184 5961 5345 2364 99 3 0 chr4 196286344 196286656 -6041691 - AluSq SINE Alu 0 313 1 379 293 132 49 chr4 196286656 196287422 -6040925 - L1ME3 LINE L1 -800 5345 4381 244 313 24 12 chr4 196287547 196287630 -6040717 - L1ME3 LINE L1 -5475 644 561 201 129 0 0 chr4 196288820 196288851 -6039496 + (CA)n Simple_repeat Simple_repeat 2 32 0 2067 142 3 0 chr4 196289166 196289475 -6038872 + AluSg SINE Alu 1 310 0 197 308 133 26 chr4 196289690 196289885 -6038462 + MIR SINE MIR 46 261 -1 507 127 100 55 chr4 196289911 196290021 -6038326 + AluJ SINE Alu 52 166 -146 3740 142 72 40 chr4 196290021 196290911 -6037436 + pTR5 LTR ERV1 770 2020 -418 350 245 10 0 chr4 196290915 196291013 -6037334 + LTR30 LTR ERV1 544 642 -80 1553 99 5 5 chr4 196291015 196291237 -6037110 + pTR5 LTR ERV1 171 392 -2046 726 229 19 13 chr4 196291237 196291394 -6036953 + AluJ SINE Alu 142 299 -13 4333 212 62 17 chr4 196291576 196292196 -6036151 - L1MD1 LINE L1 0 6636 6045 282 29 0 0 chr4 196292196 196292231 -6036116 + (TG)n Simple_repeat Simple_repeat 2 36 0 4333 212 62 17 chr4 196292231 196293414 -6034933 - L1MD1 LINE L1 -591 6045 4702 694 235 62 18 chr4 196293439 196293711 -6034636 + L1M4 LINE L1 4967 5250 -896 1011 261 14 14 chr4 196293739 196294022 -6034325 - L1MD1 LINE L1 -1883 4657 4375 1993 254 45 36 chr4 196295273 196295466 -6032881 - L1MD1 LINE L1 -2189 4351 4161 2196 108 0 25 chr4 196295466 196295780 -6032567 - AluSx SINE Alu -6 306 1 1993 254 45 36 chr4 196295780 196296465 -6031882 - L1MD1 LINE L1 -2379 4161 3465 7365 216 43 45 chr4 196296622 196297511 -6030836 - L1MD1 LINE L1 -3422 3118 2229 2098 139 0 22 chr4 196297511 196297827 -6030520 - AluSg SINE Alu -1 309 1 7365 216 43 45 chr4 196297827 196297900 -6030447 - L1MD1 LINE L1 -4311 2229 2157 2063 139 0 10 chr4 196297900 196298201 -6030146 - AluSx SINE Alu -14 298 1 7365 216 43 45 chr4 196298201 196299909 -6028438 - L1MD1 LINE L1 -4383 2157 368 11309 128 54 19 chr4 196299916 196301773 -6026574 + Tigger1 DNA MER2_type 2 1924 -494 335 314 38 25 chr4 196301873 196302032 -6026315 + L2 LINE L2 2012 2172 -1142 186 175 75 0 chr4 196302038 196302066 -6026281 + MER5B DNA MER1_type 17 50 -128 2524 58 0 0 chr4 196302066 196302374 -6025973 + AluY SINE Alu 1 308 -3 186 175 75 0 chr4 196302374 196302385 -6025962 + MER5B DNA MER1_type 50 59 -119 4703 160 17 25 chr4 196302607 196303531 -6024816 - L1 LINE L1 -874 5272 4356 964 261 112 73 chr4 196303521 196304256 -6024091 - HAL1 LINE L1 -1246 1261 499 * 1287 86 38 11 chr4 196304429 196304615 -6023732 + AluSg/x SINE Alu 106 296 -14 756 281 66 30 chr4 196304645 196304947 -6023400 - HAL1 LINE L1 -2179 328 16 24 32 0 0 chr4 196306042 196306073 -6022274 + AT_rich Low_complexity Low_complexity 1 31 0 1555 185 76 12 chr4 196306599 196306940 -6021407 - MLT1A1 LTR MaLR -2 363 1 1763 163 0 20 chr4 196307586 196307887 -6020460 + AluJo SINE Alu 1 295 -17 249 77 0 0 chr4 196308221 196308260 -6020087 - L1MA8 LINE L1 -4 6287 6249 2557 58 0 0 chr4 196308309 196308617 -6019730 - AluY SINE Alu -3 308 1 2336 99 0 3 chr4 196309115 196309428 -6018919 - AluSx SINE Alu 0 312 1 21 36 0 0 chr4 196309610 196309638 -6018709 + AT_rich Low_complexity Low_complexity 1 28 0 2355 109 0 0 chr4 196310990 196311301 -6017046 + AluSx SINE Alu 1 311 -1 256 255 143 10 chr4 196311379 196311477 -6016870 + MLT1J2 LTR MaLR 32 142 -308 234 256 49 37 chr4 196312151 196312233 -6016114 - L2 LINE L2 -8 3264 3182 268 346 44 16 chr4 196312711 196312893 -6015454 + MIR SINE MIR 3 189 -73 1353 176 4 9 chr4 196313781 196314008 -6014339 - AluJo SINE Alu -81 231 6 2204 108 0 3 chr4 196314752 196315058 -6013289 + AluSc SINE Alu 1 305 -4 1647 90 36 5 chr4 196315083 196315306 -6013041 - MER30 DNA MER1_type 0 230 1 239 62 0 0 chr4 196315647 196315679 -6012668 - AluJb SINE Alu -7 295 264 1350 144 5 0 chr4 196315679 196315881 -6012466 - AluJb SINE Alu -109 203 1 1758 97 0 0 chr4 196316095 196316321 -6012026 + AluSx SINE Alu 6 231 -81 21 0 0 0 chr4 196317889 196317910 -6010437 + AT_rich Low_complexity Low_complexity 1 21 0 416 264 33 8 chr4 196318069 196318190 -6010157 + MER94 DNA DNA 11 134 0 2265 97 3 3 chr4 196318337 196318637 -6009710 - AluY SINE Alu -11 300 1 1479 226 43 65 chr4 196320128 196320544 -6007803 - MLT1C LTR MaLR -60 407 1 334 299 119 17 chr4 196320775 196320952 -6007395 + HAL1b LINE L1 53 247 -1101 726 318 68 28 chr4 196321077 196321608 -6006739 + HAL1b LINE L1 283 834 -514 834 138 0 15 chr4 196321667 196321797 -6006550 + AluSg/x SINE Alu 171 298 -14 222 37 0 0 chr4 196321797 196321824 -6006523 + (TA)n Simple_repeat Simple_repeat 2 28 0 324 266 88 78 chr4 196321954 196322146 -6006201 + L1ME1 LINE L1 5951 6144 -22 1798 176 205 2 chr4 196322378 196322798 -6005549 + MLT1D LTR MaLR 1 505 0 682 272 53 69 chr4 196323017 196323639 -6004708 + L1MC4 LINE L1 6815 7432 -610 1052 130 0 0 chr4 196323643 196323789 -6004558 + AluSq/x SINE Alu 1 146 -167 4421 79 42 55 chr4 196323789 196324407 -6003940 - LTR66 LTR ERVL 0 610 1 1417 69 3 6 chr4 196324407 196324723 -6003624 - HERVL66 LTR ERVL 0 4329 3928 1584 189 43 58 chr4 196325768 196326164 -6002183 - MLT1B LTR MaLR 0 390 1 1438 182 82 71 chr4 196327024 196327404 -6000943 + MLT1B LTR MaLR 4 387 -3 8825 53 11 0 chr4 196327679 196328675 -5999672 + LTR13 LTR ERVK 1 1007 0 2484 67 67 21 chr4 196328870 196329199 -5999148 + LTR14A LTR ERVK 1 344 0 1667 291 154 19 chr4 196329214 196330157 -5998190 + L2 LINE L2 842 1911 -1403 25 31 0 0 chr4 196330176 196330208 -5998139 + AT_rich Low_complexity Low_complexity 1 32 0 818 199 120 45 chr4 196331193 196331582 -5996765 - LTR54B LTR ERV1 0 498 46 932 262 29 8 chr4 196332604 196332848 -5995499 - MIR SINE MIR -6 256 8 397 239 22 0 chr4 196333322 196333414 -5994933 + L1MC5 LINE L1 7793 7886 -75 22 70 0 0 chr4 196333429 196333472 -5994875 + AT_rich Low_complexity Low_complexity 1 43 0 2226 92 0 0 chr4 196334279 196334618 -5993729 + AluSg SINE Alu 1 339 0 6112 47 7 14 chr4 196334768 196335497 -5992850 + L1PA7 LINE L1 5428 6151 -3 442 324 72 19 chr4 196335690 196335952 -5992395 - L1ME3 LINE L1 -221 5949 5674 415 264 9 19 chr4 196335955 196336061 -5992286 - MLT1I LTR MaLR -163 246 142 424 267 94 39 chr4 196337199 196337379 -5990968 - MLT1I LTR MaLR -219 190 1 477 266 8 23 chr4 196337381 196337509 -5990838 - L2 LINE L2 -19 3294 3169 2312 96 3 0 chr4 196338787 196339079 -5989268 - AluSp SINE Alu -20 293 1 347 300 91 58 chr4 196339194 196339524 -5988823 + L2 LINE L2 2564 2904 -410 1028 295 75 8 chr4 196339530 196339921 -5988426 - L1ME3A LINE L1 -321 5849 5435 1327 282 80 43 chr4 196339978 196340300 -5988047 - L1ME3A LINE L1 -930 5216 4907 1740 196 0 7 chr4 196340300 196340606 -5987741 + AluJb SINE Alu 1 304 -8 1327 282 80 43 chr4 196340606 196341007 -5987340 - L1ME3A LINE L1 -1239 4907 4466 1338 252 121 35 chr4 196341040 196341643 -5986704 - L1ME3A LINE L1 -1806 4340 3686 225 253 25 13 chr4 196341673 196341752 -5986595 - L1ME3A LINE L1 -2542 3604 3525 399 41 0 0 chr4 196342239 196342288 -5986059 + (CA)n Simple_repeat Simple_repeat 2 50 0 2238 59 7 0 chr4 196342438 196342709 -5985638 - L1PA13 LINE L1 -4 6159 5887 1359 158 117 15 chr4 196343040 196343306 -5985041 - AluSg SINE Alu -7 303 11 226 0 29 29 chr4 196344003 196344038 -5984309 + (CA)n Simple_repeat Simple_repeat 2 36 0 1407 232 84 72 chr4 196344038 196344579 -5983768 + L1MC5 LINE L1 6972 7530 -431 2206 102 3 3 chr4 196344579 196344873 -5983474 - AluSc SINE Alu -10 299 6 1407 232 84 72 chr4 196344873 196345207 -5983140 + L1MC5 LINE L1 7530 7858 -103 15834 193 19 9 chr4 196345904 196351999 -5976348 + L1PB1 LINE L1 6 6509 -358 213 94 0 0 chr4 196351999 196352031 -5976316 + (TA)n Simple_repeat Simple_repeat 2 33 0 15834 193 19 9 chr4 196352031 196352394 -5975953 + L1PB1 LINE L1 6509 6867 0 255 202 0 0 chr4 196352428 196352512 -5975835 + (TA)n Simple_repeat Simple_repeat 1 84 0 7191 173 23 4 chr4 196352639 196354881 -5973466 + L1PA16 LINE L1 3882 6165 -1 517 167 186 0 chr4 196354888 196354990 -5973357 + FLAM_A SINE Alu 1 121 -12 33 0 0 0 chr4 196355004 196355037 -5973310 + AT_rich Low_complexity Low_complexity 1 33 0 1874 177 12 17 chr4 196355088 196355433 -5972914 - MLT2C2 LTR ERVL -121 343 1 276 309 0 0 chr4 196355607 196355675 -5972672 - L2 LINE L2 -15 3298 3231 446 317 49 58 chr4 196355702 196356020 -5972327 - L2 LINE L2 -191 3081 2763 216 0 0 0 chr4 196356857 196356881 -5971466 + (CAG)n Simple_repeat Simple_repeat 3 26 0 324 0 0 0 chr4 196357554 196357590 -5970757 + (A)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr4 196358041 196358062 -5970285 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 196358462 196358484 -5969863 + AT_rich Low_complexity Low_complexity 1 22 0 1217 213 197 48 chr4 196358929 196359042 -5969305 - L1ME3 LINE L1 -21 6141 6046 1996 160 74 63 chr4 196359042 196359504 -5968843 - MLT1C LTR MaLR 0 467 1 1217 213 197 48 chr4 196359504 196359912 -5968435 - L1ME3 LINE L1 -116 6046 5542 1566 241 28 73 chr4 196359946 196360619 -5967728 - L1ME3 LINE L1 -1016 5130 4488 862 249 155 46 chr4 196360625 196361018 -5967329 + Charlie7 DNA MER1_type 1266 1701 -911 902 209 11 6 chr4 196361023 196361205 -5967142 - MER5A DNA MER1_type -5 184 2 266 265 0 0 chr4 196361237 196361305 -5967042 + Charlie7 DNA MER1_type 1722 1789 -823 1497 210 74 3 chr4 196361305 196361657 -5966690 - L1MB3 LINE L1 -8 6175 5799 1123 271 95 42 chr4 196361663 196361993 -5966354 + Charlie7 DNA MER1_type 1785 2096 -516 180 0 0 0 chr4 196361993 196362013 -5966334 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 13506 24 4 1 chr4 196362021 196364287 -5964060 - L1PA4 LINE L1 -6 6149 3877 1123 271 95 42 chr4 196364287 196364726 -5963621 + Charlie7 DNA MER1_type 2102 2604 -8 260 294 83 18 chr4 196365570 196365679 -5962668 + MLT1J2 LTR MaLR 104 219 -231 243 0 0 0 chr4 196365944 196365971 -5962376 + (A)n Simple_repeat Simple_repeat 1 27 0 390 248 0 10 chr4 196366533 196366638 -5961709 - L1MA4A LINE L1 -2 6274 6056 3841 149 18 36 chr4 196366640 196366978 -5961369 - L1MA4A LINE L1 -182 6121 5779 2212 79 7 0 chr4 196366978 196367281 -5961066 - AluSx SINE Alu 0 305 1 3841 149 18 36 chr4 196367281 196367400 -5960947 - L1MA4A LINE L1 -524 5779 5659 2491 78 0 0 chr4 196367400 196367706 -5960641 - AluY SINE Alu -5 306 1 3841 149 18 36 chr4 196367706 196367977 -5960370 - L1MA4A LINE L1 -644 5659 5404 2698 106 8 22 chr4 196367977 196368346 -5960001 - THE1B LTR MaLR 0 364 1 5428 73 1 11 chr4 196368346 196369047 -5959300 - THE1B-int LTR MaLR 0 1580 887 2371 90 7 3 chr4 196372616 196372917 -5955430 - AluSp SINE Alu -11 302 1 299 305 55 37 chr4 196373309 196373473 -5954874 - MIR3 SINE MIR -33 175 9 379 296 15 15 chr4 196375620 196375755 -5952592 - L2 LINE L2 0 3313 3179 237 33 0 0 chr4 196376376 196376406 -5951941 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 1428 95 6 0 chr4 196376511 196376690 -5951657 - AluSp SINE Alu -133 180 1 21 0 0 0 chr4 196376971 196376992 -5951355 + AT_rich Low_complexity Low_complexity 1 21 0 1769 180 3 6 chr4 196378235 196378546 -5949801 - AluJo SINE Alu -2 310 1 1068 109 0 0 chr4 196379030 196379196 -5949151 + AluSg/x SINE Alu 147 312 0 21 71 0 0 chr4 196379806 196379848 -5948499 + AT_rich Low_complexity Low_complexity 1 42 0 263 28 0 0 chr4 196379996 196380032 -5948315 + L1PA16 LINE L1 6128 6163 -3 347 313 67 18 chr4 196380048 196380308 -5948039 + L2 LINE L2 2790 3058 -255 1598 76 0 81 chr4 196380453 196380689 -5947658 + AluY SINE Alu 9 225 -86 543 236 24 140 chr4 196381008 196381301 -5947046 + HAL1 LINE L1 447 705 -1802 475 333 26 0 chr4 196381334 196381487 -5946860 + LTR33 LTR ERVL 21 177 -344 233 190 121 17 chr4 196381591 196381649 -5946698 + LTR33A LTR ERVL 299 362 -161 1814 181 41 137 chr4 196381691 196382297 -5946050 - LTR8A LTR ERV1 0 727 180 872 208 30 59 chr4 196382314 196382430 -5945917 - LTR8 LTR ERV1 -462 229 122 2278 118 25 25 chr4 196382430 196382794 -5945553 - THE1B LTR MaLR 0 364 1 872 208 30 59 chr4 196382794 196382913 -5945434 - LTR8 LTR ERV1 -569 122 1 518 201 82 44 chr4 196383076 196383235 -5945112 + HAL1 LINE L1 790 954 -1553 589 223 176 4 chr4 196383325 196383558 -5944789 + HAL1 LINE L1 1390 1662 -845 556 265 60 96 chr4 196383563 196383865 -5944482 + MLT1F1 LTR MaLR 1 303 -251 3192 172 4 2 chr4 196383937 196384467 -5943880 - LTR26B LTR ERV1 0 531 1 348 328 64 0 chr4 196384515 196384686 -5943661 + L1MC4a LINE L1 5197 5378 -768 231 341 16 0 chr4 196384813 196384942 -5943405 + L1MC4a LINE L1 5470 5600 -570 2432 97 0 0 chr4 196385068 196385376 -5942971 + AluSg SINE Alu 1 308 -2 3468 161 79 14 chr4 196385392 196386050 -5942297 + MER67C LTR ERV1 10 710 0 467 305 97 11 chr4 196386051 196386330 -5942017 + L1MC4a LINE L1 5694 5996 -1812 1370 208 50 20 chr4 196386336 196386639 -5941708 + AluJo SINE Alu 1 312 0 3438 141 18 53 chr4 196387241 196387367 -5940980 - MER41B LTR ERV1 0 635 506 2020 103 0 0 chr4 196387367 196387629 -5940718 + AluSg SINE Alu 43 304 -6 3438 141 18 53 chr4 196387629 196387922 -5940425 - MER41B LTR ERV1 -129 506 245 1808 121 6 82 chr4 196387922 196388253 -5940094 - L1PA14 LINE L1 -4 6157 5852 3438 141 18 53 chr4 196388253 196388490 -5939857 - MER41B LTR ERV1 -390 245 1 369 76 45 0 chr4 196388731 196388797 -5939550 + CT-rich Low_complexity Low_complexity 1 69 0 1730 163 11 7 chr4 196388797 196389074 -5939273 - AluJb SINE Alu -23 289 12 915 220 116 91 chr4 196389169 196389706 -5938641 + MER34C LTR ERV1 36 585 0 2866 190 11 5 chr4 196389801 196390348 -5937999 - LTR27 LTR ERV1 -140 496 2 1277 197 119 81 chr4 196390700 196391250 -5937097 - MER34B LTR ERV1 0 542 1 256 316 0 0 chr4 196391596 196391672 -5936675 + MER34 LTR ERV1 21 96 -446 1118 223 69 33 chr4 196391677 196392130 -5936217 + LTR48B LTR ERV1 137 644 0 2073 96 68 10 chr4 196392435 196392727 -5935620 + AluSq SINE Alu 2 310 -3 920 230 88 100 chr4 196392917 196393236 -5935111 - MER34C LTR ERV1 0 585 263 1396 209 16 3 chr4 196393236 196393542 -5934805 + AluJo SINE Alu 1 310 -2 1699 165 0 18 chr4 196393547 196393820 -5934527 + AluJo SINE Alu 24 291 -21 920 230 88 100 chr4 196393820 196394042 -5934305 - MER34C LTR ERV1 -326 259 45 27 0 0 0 chr4 196395070 196395097 -5933250 + AT_rich Low_complexity Low_complexity 1 27 0 31 0 0 0 chr4 196395197 196395228 -5933119 + AT_rich Low_complexity Low_complexity 1 31 0 850 153 0 0 chr4 196395568 196395692 -5932655 - FLAM_C SINE Alu -19 124 1 2074 132 0 0 chr4 196396401 196396689 -5931658 + AluSx SINE Alu 20 307 -5 299 315 9 27 chr4 196396824 196396856 -5931491 + LTR16A LTR ERVL 328 359 -91 1234 265 85 42 chr4 196396856 196397376 -5930971 - MER34 LTR ERV1 0 542 1 299 315 9 27 chr4 196397376 196397454 -5930893 + LTR16A LTR ERVL 359 436 -14 21 0 0 0 chr4 196397991 196398012 -5930335 + AT_rich Low_complexity Low_complexity 1 21 0 1754 157 20 64 chr4 196398166 196398523 -5929824 + MER4E LTR ERV1 1 341 -438 605 153 0 57 chr4 196398536 196398660 -5929687 - AluSc SINE Alu 0 309 193 2072 172 78 28 chr4 196398661 196399086 -5929261 + MER4E LTR ERV1 334 779 0 1320 249 43 45 chr4 196399356 196399465 -5928882 + L1MC5 LINE L1 7259 7367 -594 623 179 231 0 chr4 196399465 196399599 -5928748 + FAM SINE Alu 1 165 -10 1320 249 43 45 chr4 196399599 196400095 -5928252 + L1MC5 LINE L1 7367 7863 -98 2263 97 20 3 chr4 196400130 196400429 -5927918 - AluSc SINE Alu -5 304 1 1200 180 133 86 chr4 196400439 196401007 -5927340 - MER4C LTR ERV1 -25 440 1 848 217 137 59 chr4 196401005 196401525 -5926822 - MER34B LTR ERV1 -2 563 9 * 21 71 0 0 chr4 196401702 196401744 -5926603 + AT_rich Low_complexity Low_complexity 1 42 0 1096 132 44 83 chr4 196401875 196402116 -5926231 - AluJb SINE Alu 0 319 87 2198 97 21 0 chr4 196403379 196403668 -5924679 + AluSx SINE Alu 1 295 -17 2109 133 16 3 chr4 196404579 196404861 -5923486 + AluSx SINE Alu 1 291 -167 582 54 0 0 chr4 196404861 196404935 -5923412 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 2109 133 16 3 chr4 196404935 196405106 -5923241 + AluSx SINE Alu 291 458 0 2306 85 3 57 chr4 196405293 196405624 -5922723 - AluSp SINE Alu 0 313 1 2049 117 48 0 chr4 196405766 196406057 -5922290 - AluY SINE Alu -2 309 5 223 311 91 8 chr4 196408120 196408252 -5920095 + L2 LINE L2 3169 3311 -2 512 221 0 11 chr4 196409174 196409355 -5918992 + (CA)n Simple_repeat Simple_repeat 1 179 0 518 202 6 0 chr4 196409392 196409560 -5918787 + (CA)n Simple_repeat Simple_repeat 1 169 0 2364 110 0 0 chr4 196409759 196410067 -5918280 + AluSx SINE Alu 1 308 -4 808 281 81 29 chr4 196410799 196411348 -5916999 + L2 LINE L2 2721 3294 -19 1802 103 0 0 chr4 196411775 196412017 -5916330 + AluSq SINE Alu 72 313 0 1983 210 98 35 chr4 196412888 196413487 -5914860 + L1MC4 LINE L1 6441 7089 -797 481 221 327 16 chr4 196413491 196413794 -5914553 + L1MC4 LINE L1 7238 7634 -408 675 187 0 47 chr4 196413839 196413989 -5914358 + L1MC4 LINE L1 7757 7899 -143 1553 73 9 45 chr4 196416112 196416332 -5912015 - AluY SINE Alu -11 300 89 2009 123 126 50 chr4 196418198 196418596 -5909751 + MSTA LTR MaLR 1 428 0 1933 134 14 0 chr4 196418767 196419050 -5909297 + AluSx SINE Alu 1 287 -25 1682 247 100 12 chr4 196419121 196419610 -5908737 - MER34 LTR ERV1 0 542 11 235 287 191 35 chr4 196419999 196420365 -5907982 + LTR33 LTR ERVL 68 490 -31 334 250 65 37 chr4 196420376 196420484 -5907863 + HsTC2 DNA Tc2 1290 1576 -322 981 255 63 15 chr4 196420834 196421167 -5907180 + HsTC2 DNA Tc2 1545 1893 -5 2486 85 0 10 chr4 196421530 196421837 -5906510 - AluSq SINE Alu -7 306 3 346 299 39 0 chr4 196422045 196422172 -5906175 - HAL1b LINE L1 -998 350 219 569 145 0 0 chr4 196423338 196423421 -5904926 - Tigger5 DNA MER2_type -1 2322 2240 2123 196 46 2 chr4 196423425 196423858 -5904489 - Tigger5 DNA MER2_type -1871 452 1 1663 152 0 59 chr4 196424528 196424817 -5903530 + AluJb SINE Alu 14 285 -27 2191 108 3 13 chr4 196424940 196425246 -5903101 - AluSx SINE Alu -5 307 5 2442 91 0 0 chr4 196426161 196426469 -5901878 - AluSg SINE Alu -2 308 1 1718 249 60 34 chr4 196427291 196427821 -5900526 + MLT1H1 LTR MaLR 2 545 -10 197 286 0 77 chr4 196427969 196428060 -5900287 + L3b LINE CR1 1293 1376 -207 2299 105 0 10 chr4 196428986 196429300 -5899047 - AluY SINE Alu 0 311 1 397 206 20 10 chr4 196429909 196430011 -5898336 + L2 LINE L2 3201 3303 -10 469 263 9 9 chr4 196430189 196430303 -5898044 - MER63A DNA MER1_type 0 210 97 192 346 0 0 chr4 196430443 196430524 -5897823 - MIR3 SINE MIR -5 203 123 267 313 0 16 chr4 196430921 196431103 -5897244 + (CAGA)n Simple_repeat Simple_repeat 1 179 0 277 320 0 11 chr4 196431213 196431394 -5896953 + (CAGA)n Simple_repeat Simple_repeat 1 179 0 814 195 29 29 chr4 196431969 196432174 -5896173 + PABL_B LTR ERV1 463 667 0 451 133 13 0 chr4 196432620 196432695 -5895652 + AluS SINE Alu 2 77 -235 528 191 34 103 chr4 196432935 196433139 -5895208 + AluSg/x SINE Alu 117 306 -3 1838 84 8 4 chr4 196433224 196433463 -5894884 - AluY SINE Alu -18 293 54 2184 116 0 25 chr4 196433910 196434229 -5894118 - AluSp SINE Alu -2 311 1 1634 105 35 51 chr4 196434229 196434485 -5893862 - AluSq SINE Alu -13 300 48 182 333 33 0 chr4 196434675 196434765 -5893582 + MIR3 SINE MIR 109 201 -7 8543 127 9 6 chr4 196436920 196439345 -5889002 + L1MA1 LINE L1 3868 6302 0 913 218 0 0 chr4 196440280 196440454 -5887893 + AluJb SINE Alu 137 310 -2 21 0 0 0 chr4 196440868 196440889 -5887458 + AT_rich Low_complexity Low_complexity 1 21 0 255 252 30 53 chr4 196441210 196441341 -5887006 + HAL1b LINE L1 340 467 -881 604 244 220 77 chr4 196441442 196441910 -5886437 - MLT1G LTR MaLR -13 577 48 198 344 61 6 chr4 196442098 196442261 -5886086 + L2 LINE L2 990 1161 -2153 2222 119 3 0 chr4 196442299 196442601 -5885746 + AluSx SINE Alu 1 303 -9 523 263 30 0 chr4 196443502 196443635 -5884712 - MER117 DNA MER1_type -60 137 1 788 230 58 47 chr4 196443637 196443907 -5884440 - MER31B LTR ERV1 0 543 193 923 284 123 39 chr4 196443924 196444233 -5884114 - MER34 LTR ERV1 0 542 189 2263 107 3 0 chr4 196444233 196444524 -5883823 - AluSp SINE Alu -21 292 1 923 284 123 39 chr4 196444524 196444622 -5883725 - MER34 LTR ERV1 -353 189 101 507 243 7 22 chr4 196444693 196444829 -5883518 - MER31B LTR ERV1 -332 134 1 650 224 19 78 chr4 196444959 196445164 -5883183 + MER39 LTR ERV1 34 226 -481 1322 231 41 28 chr4 196445186 196445549 -5882798 + MER39 LTR ERV1 340 707 0 1828 159 3 20 chr4 196446354 196446655 -5881692 - AluJo SINE Alu -11 301 6 1284 186 20 4 chr4 196447487 196447722 -5880625 + MER49 LTR ERV1 5 246 -677 2438 92 0 0 chr4 196447722 196448026 -5880321 + AluY SINE Alu 1 304 -7 1284 186 20 4 chr4 196448026 196448038 -5880309 + MER49 LTR ERV1 246 256 -667 732 235 78 9 chr4 196448151 196448411 -5879936 + MER4D LTR ERV1 329 544 -66 665 176 8 8 chr4 196448611 196448730 -5879617 + MER4D LTR ERV1 775 893 -10 1737 131 61 71 chr4 196448741 196448881 -5879466 - LTR56 LTR ERV1 0 445 305 2213 104 10 0 chr4 196448881 196449169 -5879178 - AluSc SINE Alu -16 293 3 1449 148 112 36 chr4 196449173 196449450 -5878897 - AluJo SINE Alu -13 299 2 2208 95 18 0 chr4 196449459 196449744 -5878603 - AluSc SINE Alu -19 290 1 1737 131 61 71 chr4 196449744 196450048 -5878299 - LTR56 LTR ERV1 -151 294 16 506 220 17 12 chr4 196450048 196450221 -5878126 + C-rich Low_complexity Low_complexity 5 178 0 522 135 0 0 chr4 196450651 196450755 -5877592 + (CA)n Simple_repeat Simple_repeat 1 104 0 415 154 0 0 chr4 196451522 196451620 -5876727 + MER34C LTR ERV1 6 78 -507 388 191 0 0 chr4 196451621 196451689 -5876658 + MER34C LTR ERV1 6 73 -512 * 414 159 0 0 chr4 196451657 196451726 -5876621 + MER34C LTR ERV1 6 74 -511 400 174 0 0 chr4 196451727 196451796 -5876551 + MER34C LTR ERV1 6 74 -511 430 147 0 0 chr4 196451797 196451865 -5876482 + MER34C LTR ERV1 6 73 -512 396 159 0 0 chr4 196451833 196451902 -5876445 + MER34C LTR ERV1 6 74 -511 * 407 162 0 0 chr4 196451903 196451971 -5876376 + MER34C LTR ERV1 6 73 -512 402 162 0 0 chr4 196451975 196452043 -5876304 + MER34C LTR ERV1 6 73 -512 * 414 145 0 0 chr4 196452011 196452080 -5876267 + MER34C LTR ERV1 6 74 -511 1383 161 38 19 chr4 196452081 196452348 -5875999 + MER34C LTR ERV1 6 277 -308 838 196 24 62 chr4 196452340 196452549 -5875798 + MER34C LTR ERV1 384 584 -1 * 186 280 0 20 chr4 196454179 196454229 -5874118 - MER5A DNA MER1_type 0 189 141 1632 161 93 31 chr4 196454231 196454338 -5874009 + LOR1b LTR ERV1 118 217 -244 1866 119 24 0 chr4 196454338 196454590 -5873757 - AluSg SINE Alu -52 258 1 1632 161 93 31 chr4 196454590 196454805 -5873542 + LOR1b LTR ERV1 217 460 -1 831 174 0 0 chr4 196454829 196454961 -5873386 - FLAM_C SINE Alu -1 132 1 1604 239 36 12 chr4 196455330 196455748 -5872599 - MER39 LTR ERV1 -20 687 260 283 314 23 0 chr4 196456164 196456250 -5872097 - L2 LINE L2 -47 3225 3138 1199 167 10 0 chr4 196456269 196456461 -5871886 + AluJo SINE Alu 82 275 -37 505 104 0 0 chr4 196456461 196456528 -5871819 + AluJ/FRAM SINE Alu 221 287 -25 299 308 175 25 chr4 196456650 196457089 -5871258 + L2 LINE L2 1993 2497 -817 414 301 16 0 chr4 196457105 196457228 -5871119 + MIR SINE MIR 18 142 -120 1105 284 62 87 chr4 196457228 196457952 -5870395 + MER21B LTR ERV1 6 711 -152 306 287 56 0 chr4 196457953 196458061 -5870286 + MIR SINE MIR 149 262 0 1492 167 27 15 chr4 196458072 196458335 -5870012 - AluJo SINE Alu -20 292 27 245 333 50 0 chr4 196458383 196458482 -5869865 + L1ME LINE L1 345 448 -5975 2294 235 58 43 chr4 196458676 196459400 -5868947 + L1ME LINE L1 721 1455 -4968 1535 254 58 13 chr4 196459402 196459957 -5868390 + L1ME LINE L1 4873 5452 -1489 289 211 58 19 chr4 196459957 196460061 -5868286 + L1ME LINE L1 5755 5862 -1079 286 236 43 106 chr4 196460074 196460235 -5868112 + L1ME LINE L1 6342 6492 -467 219 240 0 20 chr4 196460381 196460431 -5867916 - MER5B DNA MER1_type -96 82 34 743 146 32 8 chr4 196460431 196460554 -5867793 + FLAM_C SINE Alu 2 127 -16 286 54 0 0 chr4 196461151 196461188 -5867159 - MADE1 DNA Mariner -4 76 40 356 304 71 13 chr4 196461317 196461541 -5866806 + L1MC4a LINE L1 5641 5877 -1931 3151 191 7 14 chr4 196461582 196461680 -5866667 + MER41D LTR ERV1 1 98 -459 2464 108 5 68 chr4 196461680 196462080 -5866267 - THE1C LTR MaLR 0 375 1 3151 191 7 14 chr4 196462080 196462542 -5865805 + MER41D LTR ERV1 98 557 0 22 0 0 0 chr4 196462763 196462785 -5865562 + AT_rich Low_complexity Low_complexity 1 22 0 647 81 0 0 chr4 196463183 196463269 -5865078 - AluJ/FLAM SINE Alu -226 86 1 360 0 0 0 chr4 196463761 196463801 -5864546 + (CA)n Simple_repeat Simple_repeat 2 41 0 789 225 67 17 chr4 196464332 196464572 -5863775 - MIR SINE MIR -7 255 4 941 197 76 15 chr4 196464596 196464794 -5863553 - MER20 DNA MER1_type -2 217 8 2197 87 0 7 chr4 196464942 196465231 -5863116 - AluSx SINE Alu -23 289 3 189 0 0 0 chr4 196465280 196465301 -5863046 + (T)n Simple_repeat Simple_repeat 1 21 0 626 155 0 0 chr4 196465762 196465865 -5862482 + U6 snRNA snRNA 1 103 -4 873 253 181 18 chr4 196466113 196466603 -5861744 + MLT1F1 LTR MaLR 1 567 0 1344 189 101 15 chr4 196467104 196467432 -5860915 + L1MA9 LINE L1 5954 6309 -3 189 250 94 0 chr4 196467521 196467585 -5860762 + L2 LINE L2 3193 3262 -51 1605 234 37 25 chr4 196467845 196468246 -5860101 + MLT2D LTR ERVL 2 407 -7 252 0 0 0 chr4 196468250 196468278 -5860069 + (TG)n Simple_repeat Simple_repeat 1 28 0 26 0 0 0 chr4 196468304 196468330 -5860017 + AT_rich Low_complexity Low_complexity 1 26 0 810 139 33 0 chr4 196468331 196468453 -5859894 - FLAM_C SINE Alu -7 126 1 1314 213 18 15 chr4 196468470 196468742 -5859605 - MLT2D LTR ERVL -139 275 3 1710 139 0 0 chr4 196469729 196469980 -5858367 + AluSx SINE Alu 53 303 -9 2156 99 10 32 chr4 196470075 196470389 -5857958 - AluSc SINE Alu -2 307 1 621 202 40 46 chr4 196470679 196470852 -5857495 - L1MA9 LINE L1 -35 6277 6106 1780 196 45 13 chr4 196470854 196471252 -5857095 + MSTA LTR MaLR 5 415 -13 321 228 26 44 chr4 196471352 196471466 -5856881 + L1M4 LINE L1 4566 4677 -1469 210 71 0 0 chr4 196471858 196471886 -5856461 + (GA)n Simple_repeat Simple_repeat 1 28 0 574 158 30 30 chr4 196471969 196472133 -5856214 - L1M4 LINE L1 -3213 2933 2770 1818 162 13 22 chr4 196472137 196472451 -5855896 - AluJo SINE Alu -1 311 1 722 197 0 35 chr4 196472467 196472609 -5855738 - FLAM_C SINE Alu -5 138 2 641 217 217 28 chr4 196472612 196472865 -5855482 - L1M4 LINE L1 -3382 2764 2464 309 254 122 33 chr4 196473147 196473328 -5855019 + MSTB2 LTR MaLR 15 211 -246 * 343 169 13 13 chr4 196473304 196473394 -5854953 + Alu SINE Alu 245 298 -2 242 148 0 115 chr4 196473391 196473452 -5854895 + MSTB2 LTR MaLR 375 428 0 * 1304 298 146 22 chr4 196473902 196474297 -5854050 + L1ME LINE L1 259 604 -5476 533 15 15 0 chr4 196474297 196474363 -5853984 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 1304 298 146 22 chr4 196474363 196474935 -5853412 + L1ME LINE L1 604 1354 -4726 2147 222 78 45 chr4 196474935 196475471 -5852876 - MLT1E2 LTR MaLR 0 626 73 905 179 19 0 chr4 196475473 196475629 -5852718 - MSTD LTR MaLR -1 395 237 2002 151 93 8 chr4 196475630 196475995 -5852352 - MSTA LTR MaLR -30 398 3 342 176 16 152 chr4 196475995 196476120 -5852227 + L1ME LINE L1 2220 2327 -3753 2449 69 3 0 chr4 196476222 196476513 -5851834 - AluY SINE Alu -19 292 1 996 189 0 12 chr4 196476724 196476888 -5851459 + FRAM SINE Alu 1 158 -18 1124 260 60 0 chr4 196477308 196477623 -5850724 - MLT1E LTR MaLR 0 593 260 434 204 9 0 chr4 196477932 196478040 -5850307 + (TCCA)n Simple_repeat Simple_repeat 3 111 0 984 142 113 45 chr4 196481349 196481596 -5846751 - L1MB7 LINE L1 -11 6173 5910 2283 120 146 5 chr4 196481598 196481989 -5846358 - Tigger2 DNA MER2_type 0 2718 2273 251 150 0 163 chr4 196481981 196482061 -5846286 - Tigger2 DNA MER2_type -2651 67 1 * 296 73 0 0 chr4 196482062 196482103 -5846244 - L1MB7 LINE L1 -266 5908 5868 538 168 8 8 chr4 196482274 196482393 -5845954 + GA-rich Low_complexity Low_complexity 2 120 0 2088 120 28 3 chr4 196482619 196482910 -5845437 - AluSq SINE Alu -14 299 2 2482 77 0 0 chr4 196482923 196483221 -5845126 - AluSx SINE Alu -11 301 4 188 191 21 21 chr4 196483749 196483796 -5844551 - MIR SINE MIR -98 164 118 246 132 0 0 chr4 196484978 196485016 -5843331 + LTR60 LTR ERV1 1 38 -548 2326 102 3 3 chr4 196485786 196486099 -5842248 + AluSq SINE Alu 1 313 0 2087 98 0 4 chr4 196486445 196486721 -5841626 + AluSq SINE Alu 39 313 0 278 365 48 0 chr4 196487894 196488039 -5840308 - MIR3 SINE MIR 0 208 57 463 246 128 17 chr4 196488614 196488875 -5839472 + MLT2E LTR ERVL 5 288 -375 386 293 70 6 chr4 196488893 196489050 -5839297 + MLT2F LTR ERVL 413 579 -84 274 282 77 32 chr4 196489098 196489254 -5839093 + ERVL-F LTR ERVL 4 166 -5598 2445 71 10 0 chr4 196489282 196489579 -5838768 + AluSc SINE Alu 1 300 -9 315 291 213 14 chr4 196489675 196489790 -5838557 + MERVL LTR ERVL 3009 3158 -2327 1671 170 42 77 chr4 196489790 196490167 -5838180 + MLT1A1 LTR MaLR 2 365 0 315 291 213 14 chr4 196490167 196490192 -5838155 + MERVL LTR ERVL 3158 3177 -2308 747 264 6 33 chr4 196490193 196490259 -5838088 + MER8 DNA MER2_type 3 69 -170 2269 114 57 20 chr4 196490259 196490610 -5837737 - THE1B LTR MaLR 0 364 1 747 264 6 33 chr4 196490610 196490725 -5837622 + MER8 DNA MER2_type 69 179 -60 422 172 0 0 chr4 196490700 196490764 -5837583 + MER2 DNA MER2_type 282 345 0 * 539 294 108 10 chr4 196490771 196490975 -5837372 + MERVL LTR ERVL 3181 3404 -2250 247 290 37 0 chr4 196491015 196491177 -5837170 + (ACTG)n Simple_repeat Simple_repeat 4 171 0 1525 275 24 24 chr4 196491234 196491735 -5836612 + MERVL LTR ERVL 3378 3878 -1776 1833 166 3 0 chr4 196492142 196492443 -5835904 + AluJb SINE Alu 1 302 -10 405 302 40 22 chr4 196492606 196492828 -5835519 - MIR SINE MIR -20 242 17 4424 42 0 16 chr4 196494771 196494785 -5833562 + L1PA4 LINE L1 5601 5614 -545 2036 144 3 3 chr4 196494785 196495090 -5833257 + AluSx SINE Alu 1 305 -7 4424 42 0 16 chr4 196495090 196495643 -5832704 + L1PA4 LINE L1 5614 6159 0 2197 111 3 13 chr4 196497092 196497390 -5830957 - AluSc SINE Alu -14 295 1 2338 36 0 46 chr4 196498125 196498428 -5829919 + L1PA4 LINE L1 5864 6152 -3 2452 88 0 0 chr4 196498989 196499294 -5829053 + AluSp SINE Alu 1 305 -8 191 152 22 0 chr4 196499957 196500003 -5828344 + (TG)n Simple_repeat Simple_repeat 2 48 0 230 278 52 61 chr4 196501245 196501360 -5826987 - L1MEd LINE L1 -5502 617 504 357 290 88 81 chr4 196501482 196501715 -5826632 - L1MEd LINE L1 -5743 376 139 2610 46 0 3 chr4 196501715 196502022 -5826325 - AluY SINE Alu -5 306 1 357 290 88 81 chr4 196502022 196502060 -5826287 - L1MEd LINE L1 -5980 139 103 1000 106 0 0 chr4 196502231 196502363 -5825984 - AluJb SINE Alu -14 298 167 2332 104 13 0 chr4 196502473 196502782 -5825565 - AluSq SINE Alu 0 313 1 1960 170 0 3 chr4 196502785 196503097 -5825250 - AluJb SINE Alu -1 311 1 3454 217 18 40 chr4 196503195 196504035 -5824312 + L1MA9 LINE L1 5442 6262 -50 384 171 0 0 chr4 196504452 196504534 -5823813 + (TG)n Simple_repeat Simple_repeat 1 82 0 191 322 17 0 chr4 196505292 196505351 -5822996 + L2 LINE L2 3240 3299 -14 1770 179 3 0 chr4 196505352 196505653 -5822694 - AluJo SINE Alu -10 302 1 2340 105 0 3 chr4 196505907 196506220 -5822127 - AluSx SINE Alu 0 312 1 1199 182 57 5 chr4 196507026 196507235 -5821112 + AluJo SINE Alu 1 220 -92 258 95 95 0 chr4 196507239 196507281 -5821066 + AluJo SINE Alu 90 135 -167 2198 106 3 0 chr4 196508748 196509041 -5819306 - AluY SINE Alu -16 295 2 2304 228 25 19 chr4 196509120 196509589 -5818758 - MER87 LTR ERV1 -18 523 49 186 43 0 0 chr4 196509589 196509612 -5818735 + (CGGGG)n Simple_repeat Simple_repeat 2 24 0 2304 228 25 19 chr4 196509612 196509660 -5818687 - MER87 LTR ERV1 -492 49 3 2199 92 0 33 chr4 196509724 196510027 -5818320 + AluSg1 SINE Alu 1 293 -16 401 286 168 10 chr4 196510540 196510736 -5817611 + MIR SINE MIR 21 247 -15 1716 134 3 78 chr4 196510751 196511086 -5817261 + AluJo SINE Alu 1 310 -2 1305 108 0 31 chr4 196511086 196511280 -5817067 + AluYa5 SINE Alu 124 311 0 213 309 73 0 chr4 196511338 196511448 -5816899 - MIR SINE MIR -73 189 72 2211 90 0 48 chr4 196511455 196511767 -5816580 + AluSc SINE Alu 1 297 -12 2671 189 51 28 chr4 196512454 196512918 -5815429 + L1MB3 LINE L1 4870 5322 -867 2125 108 0 20 chr4 196512918 196513223 -5815124 + AluSq SINE Alu 1 299 -14 2671 189 51 28 chr4 196513223 196513730 -5814617 + L1MB3 LINE L1 5322 5885 -304 506 144 0 10 chr4 196513972 196514069 -5814278 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 308 338 63 30 chr4 196514112 196514511 -5813836 - MERVL LTR ERVL -163 5322 4911 2311 122 31 21 chr4 196514807 196515193 -5813154 - MLT1B LTR MaLR 0 390 1 436 308 35 25 chr4 196515408 196515606 -5812741 - MERVL LTR ERVL -1388 4376 4177 282 353 32 9 chr4 196515894 196516112 -5812235 - MERVL LTR ERVL -1582 3903 3681 800 269 28 21 chr4 196516177 196516463 -5811884 + L1ME3A LINE L1 5873 6160 -10 745 288 164 37 chr4 196516497 196517327 -5811020 + L1M4 LINE L1 4280 5214 -932 595 225 54 0 chr4 196517331 196517460 -5810887 + FLAM_C SINE Alu 8 143 0 373 277 64 11 chr4 196517462 196517650 -5810697 + L1M4 LINE L1 5198 5395 -751 871 321 60 44 chr4 196517650 196518595 -5809752 + HERV16 LTR ERVL 2742 3454 -1542 731 195 31 19 chr4 196518597 196518756 -5809591 - LTR47B LTR ERVL -79 364 204 271 352 102 0 chr4 196518790 196518898 -5809449 - LTR47A LTR ERVL -332 120 2 1448 346 65 39 chr4 196518930 196520034 -5808313 + HERV16 LTR ERVL 3826 4980 -784 1465 200 7 0 chr4 196520034 196520324 -5808023 + L1MB3 LINE L1 5884 6175 -8 1448 346 65 39 chr4 196520324 196520686 -5807661 + HERV16 LTR ERVL 4980 5331 -433 779 275 53 36 chr4 196520878 196521161 -5807186 + LTR16A LTR ERVL 33 318 -132 10712 160 29 11 chr4 196521331 196524070 -5804277 - L1PBa LINE L1 -2110 4752 1811 2196 130 0 0 chr4 196524070 196524363 -5803984 - AluSg SINE Alu -17 293 1 10712 160 29 11 chr4 196524363 196525563 -5802784 - L1PBa LINE L1 -5051 1811 634 469 214 10 0 chr4 196525563 196525666 -5802681 - L1PBa LINE L1 -6663 200 97 812 168 16 0 chr4 196525666 196525791 -5802556 + AluJb SINE Alu 138 264 -48 1258 184 55 8 chr4 196525813 196526069 -5802278 + MSTB1 LTR MaLR 165 432 0 237 345 81 0 chr4 196526488 196526575 -5801772 + L2 LINE L2 3137 3230 -42 942 156 43 33 chr4 196528020 196528231 -5800116 + MSTB1 LTR MaLR 184 396 -36 4428 49 0 0 chr4 196528232 196528740 -5799607 - L1PA5 LINE L1 0 6154 5647 375 77 0 0 chr4 196528740 196528792 -5799555 + L1P LINE L1 5099 5150 -996 257 218 0 0 chr4 196528792 196528847 -5799500 + MSTB1 LTR MaLR 372 426 0 2708 248 31 5 chr4 196528863 196529625 -5798722 - L1 LINE L1 -2709 3437 2656 269 253 121 0 chr4 196529679 196529770 -5798577 - L1P LINE L1 -1134 5012 4911 591 236 156 17 chr4 196529911 196530199 -5798148 - L1MC5 LINE L1 -413 7548 7221 185 321 0 0 chr4 196530256 196530312 -5798035 + L2 LINE L2 3175 3230 -42 357 316 22 15 chr4 196530353 196530489 -5797858 + MIR3 SINE MIR 41 177 -31 1331 231 18 0 chr4 196530936 196531217 -5797130 - AluJo SINE Alu -25 287 2 2066 118 32 16 chr4 196531441 196531755 -5796592 + MER1B DNA MER1_type 21 339 0 4916 237 78 52 chr4 196531756 196532741 -5795606 + ERVL-F LTR ERVL 3904 5017 -747 1670 167 15 0 chr4 196532741 196533005 -5795342 + AluJb SINE Alu 28 295 -17 4916 237 78 52 chr4 196533005 196533765 -5794582 + ERVL-F LTR ERVL 5017 5756 -8 562 262 7 14 chr4 196533765 196533906 -5794441 + MLT2F LTR ERVL 1 140 -523 2178 103 0 39 chr4 196533906 196534218 -5794129 - AluSc SINE Alu -9 300 1 675 251 50 25 chr4 196534825 196535064 -5793283 + LTR16A1 LTR ERVL 201 445 -12 249 239 188 26 chr4 196535303 196535420 -5792927 + L2 LINE L2 3136 3271 -1 313 275 143 6 chr4 196535883 196536037 -5792310 + MIR SINE MIR 19 185 -69 212 197 40 40 chr4 196536550 196536626 -5791721 + (CACAC)n Simple_repeat Simple_repeat 1 76 0 501 217 174 19 chr4 196538467 196538628 -5789719 - MIR SINE MIR -52 210 25 359 40 0 20 chr4 196538710 196538760 -5789587 + (TA)n Simple_repeat Simple_repeat 2 50 0 2283 104 3 3 chr4 196539324 196539631 -5788716 + AluSx SINE Alu 1 307 -5 2254 110 3 0 chr4 196539631 196539931 -5788416 + AluSx SINE Alu 1 301 -11 24 32 0 0 chr4 196540625 196540656 -5787691 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 196540794 196540818 -5787529 + AT_rich Low_complexity Low_complexity 1 24 0 1302 168 42 0 chr4 196541086 196541324 -5787023 - L1MA9 LINE L1 0 6312 6065 796 201 8 0 chr4 196542143 196542277 -5786070 - AluJo SINE Alu -176 136 2 4574 57 24 16 chr4 196542578 196543605 -5784742 + MER11A LTR ERVK 1 1266 0 380 138 31 0 chr4 196543998 196544063 -5784284 - L1MA9 LINE L1 -252 6060 5994 2278 114 3 0 chr4 196544183 196544490 -5783857 + AluSp SINE Alu 1 308 -5 1077 231 93 95 chr4 196544517 196544831 -5783516 + MLT1E3 LTR MaLR 3 317 -307 2364 102 0 0 chr4 196544831 196545136 -5783211 + AluSx SINE Alu 1 305 -7 1077 231 93 95 chr4 196545136 196545443 -5782904 + MLT1E3 LTR MaLR 317 623 -1 1110 225 94 83 chr4 196546287 196547010 -5781337 + HAL1 LINE L1 1011 1741 -766 193 283 63 93 chr4 196547205 196547537 -5780810 + L2 LINE L2 2916 3237 -76 692 246 191 14 chr4 196547582 196548017 -5780330 + HAL1 LINE L1 1991 2502 -5 200 107 0 0 chr4 196548091 196548119 -5780228 + MIR SINE MIR 224 251 -11 21 0 0 0 chr4 196548146 196548167 -5780180 + AT_rich Low_complexity Low_complexity 1 21 0 842 176 0 0 chr4 196550519 196550650 -5777697 - FLAM_C SINE Alu -12 131 1 227 214 135 22 chr4 196551946 196552035 -5776312 + MIR SINE MIR 118 216 -46 842 250 16 0 chr4 196552729 196552913 -5775434 + MER5A DNA MER1_type 2 188 -1 21 0 0 0 chr4 196552961 196552982 -5775365 + AT_rich Low_complexity Low_complexity 1 21 0 1687 238 72 25 chr4 196554219 196554720 -5773627 + MLT1D LTR MaLR 1 623 -1 2160 87 21 7 chr4 196554891 196555179 -5773168 - AluY SINE Alu -19 292 1 288 120 0 0 chr4 196555473 196555523 -5772824 + (TA)n Simple_repeat Simple_repeat 1 50 0 219 133 0 0 chr4 196556119 196556164 -5772183 + (TG)n Simple_repeat Simple_repeat 1 45 0 1453 152 28 0 chr4 196559357 196559607 -5768740 - AluJb SINE Alu -18 294 38 2130 108 7 7 chr4 196561605 196561900 -5766447 - AluSq SINE Alu -18 295 1 356 311 71 48 chr4 196562853 196563505 -5764842 + L1MC4a LINE L1 5255 5575 -587 347 214 19 61 chr4 196565586 196565825 -5762522 + GA-rich Low_complexity Low_complexity 1 249 -380 2325 80 17 0 chr4 196565825 196566124 -5762223 + AluSq SINE Alu 1 304 -9 347 214 19 61 chr4 196566124 196566243 -5762104 + GA-rich Low_complexity Low_complexity 249 629 0 411 160 11 53 chr4 196566308 196566495 -5761852 + GA-rich Low_complexity Low_complexity 1 179 0 228 262 5 32 chr4 196566614 196566828 -5761519 + GA-rich Low_complexity Low_complexity 1 208 0 495 250 0 0 chr4 196568359 196568507 -5759840 + (TGGA)n Simple_repeat Simple_repeat 3 150 0 515 252 6 3 chr4 196568524 196568854 -5759493 + (TGGA)n Simple_repeat Simple_repeat 1 331 0 947 224 89 32 chr4 196569243 196569442 -5758905 + MER2 DNA MER2_type 49 270 -75 717 196 8 8 chr4 196569442 196569575 -5758772 - FLAM_A SINE Alu 0 133 1 947 224 89 32 chr4 196569575 196569656 -5758691 + MER2 DNA MER2_type 270 345 0 2066 86 50 0 chr4 196571065 196571345 -5757002 - AluSg SINE Alu -16 294 1 21 0 0 0 chr4 196571350 196571371 -5756976 + AT_rich Low_complexity Low_complexity 1 21 0 1242 167 0 34 chr4 196571647 196571886 -5756461 + MER46A DNA MER2_type 6 236 0 25 31 0 0 chr4 196572168 196572200 -5756147 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 196576674 196576695 -5751652 + AT_rich Low_complexity Low_complexity 1 21 0 1166 198 5 5 chr4 196581590 196581802 -5746545 + MER20 DNA MER1_type 1 212 -7 215 319 53 9 chr4 196582896 196583009 -5745338 + L2 LINE L2 2860 2977 -337 198 0 0 0 chr4 196585250 196585272 -5743075 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr4 196585320 196585342 -5743005 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr4 196585390 196585412 -5742935 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr4 196585460 196585482 -5742865 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr4 196585530 196585552 -5742795 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr4 196585600 196585622 -5742725 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr4 196585670 196585692 -5742655 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr4 196585740 196585762 -5742585 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 201 39 0 0 chr4 196585810 196585836 -5742511 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 198 0 0 0 chr4 196585884 196585906 -5742441 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr4 196585954 196585976 -5742371 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 234 0 0 0 chr4 196586024 196586050 -5742297 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 234 0 0 0 chr4 196586098 196586124 -5742223 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 234 0 0 0 chr4 196586172 196586198 -5742149 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 234 0 0 0 chr4 196586246 196586272 -5742075 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 270 0 0 0 chr4 196586320 196586350 -5741997 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 234 0 0 0 chr4 196586398 196586424 -5741923 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 234 0 0 0 chr4 196586472 196586498 -5741849 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 353 194 117 48 chr4 196587082 196587185 -5741162 + MER103 DNA DNA 8 117 -49 385 274 59 59 chr4 196589851 196590070 -5738277 - MIR SINE MIR -19 243 25 459 318 30 8 chr4 196592132 196592264 -5736083 + L2 LINE L2 3179 3313 0 294 29 0 0 chr4 196597853 196597888 -5730459 + (CA)n Simple_repeat Simple_repeat 1 35 0 1856 132 56 0 chr4 196599098 196599386 -5728961 + AluSx SINE Alu 1 304 -8 2088 114 10 3 chr4 196600962 196601260 -5727087 + AluSx SINE Alu 1 300 -12 591 306 0 5 chr4 196602295 196602494 -5725853 - MER3 DNA MER1_type -11 198 1 224 352 45 0 chr4 196603282 196603370 -5724977 - MIR SINE MIR -84 124 33 510 17 0 0 chr4 196604601 196604660 -5723687 + (TA)n Simple_repeat Simple_repeat 2 60 0 193 296 37 49 chr4 196604751 196604832 -5723515 - MIR SINE MIR -87 121 41 1840 146 7 0 chr4 196604927 196605202 -5723145 + AluSx SINE Alu 26 302 -10 333 0 0 0 chr4 196605207 196605244 -5723103 + (CA)n Simple_repeat Simple_repeat 2 38 0 804 201 67 6 chr4 196605633 196605797 -5722550 + MER3 DNA MER1_type 2 128 -81 531 290 98 27 chr4 196606471 196606695 -5721652 - MIR SINE MIR -5 257 18 23 33 0 0 chr4 196607512 196607542 -5720805 + AT_rich Low_complexity Low_complexity 1 30 0 271 337 20 10 chr4 196607789 196607890 -5720457 - MIR3 SINE MIR -19 189 88 621 282 102 43 chr4 196608601 196608995 -5719352 + MLT1C LTR MaLR 1 417 -50 520 145 24 0 chr4 196609042 196609125 -5719222 - L1MA10 LINE L1 -8 6326 6242 207 164 44 25 chr4 196610256 196610415 -5717932 + (TTAA)n Simple_repeat Simple_repeat 4 165 0 268 323 92 18 chr4 196611207 196611371 -5716976 - MIR3 SINE MIR -11 197 22 1116 221 81 39 chr4 196612838 196613123 -5715224 + MER58B DNA MER1_type 45 341 0 1708 172 16 13 chr4 196613866 196614174 -5714173 + AluJo SINE Alu 1 309 -3 2071 127 14 0 chr4 196614679 196614971 -5713376 - AluSx SINE Alu -16 296 1 242 189 68 27 chr4 196614998 196615072 -5713275 + L1MC4a LINE L1 5864 5940 -1868 1262 200 169 83 chr4 196615135 196615639 -5712708 - MER74A LTR ERVL -11 547 1 615 260 40 0 chr4 196616179 196616356 -5711991 + L1MEc LINE L1 60 243 -6153 1609 258 26 34 chr4 196616363 196616899 -5711448 + L1ME1 LINE L1 5630 6161 -5 1721 181 46 49 chr4 196618212 196618561 -5709786 + MER7A DNA MER2_type 1 346 0 180 294 0 20 chr4 196619294 196619345 -5709002 - MIR3 SINE MIR -148 60 11 2964 161 68 149 chr4 196620371 196621358 -5706989 + MER21A LTR ERV1 16 922 -9 2493 55 0 0 chr4 196622080 196622372 -5705975 - AluY SINE Alu -17 294 3 446 235 204 12 chr4 196622949 196623111 -5705236 + MIR SINE MIR 68 260 -2 202 291 40 53 chr4 196623118 196623353 -5704994 - MIR3 SINE MIR -33 229 4 208 342 26 0 chr4 196623575 196623651 -5704696 + L2 LINE L2 3149 3226 -46 3143 25 12 0 chr4 196624467 196624981 -5703366 - L1P2 LINE L1 -534 5620 5103 3918 47 0 0 chr4 196624981 196625427 -5702920 + L1PA5 LINE L1 5697 6172 0 199 71 0 0 chr4 196625427 196625455 -5702892 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 594 305 42 5 chr4 196625944 196626134 -5702213 - MIR SINE MIR -13 249 53 291 246 74 135 chr4 196626926 196627141 -5701206 - MIR SINE MIR -48 214 13 963 217 78 36 chr4 196630013 196630294 -5698053 + L1MC3 LINE L1 7455 7747 -38 23 54 0 0 chr4 196630522 196630559 -5697788 + AT_rich Low_complexity Low_complexity 1 37 0 2395 84 3 3 chr4 196630653 196630963 -5697384 + AluSq SINE Alu 1 310 -3 203 0 37 0 chr4 196631041 196631068 -5697279 + (TG)n Simple_repeat Simple_repeat 2 29 0 26 0 0 0 chr4 196631439 196631465 -5696882 + AT_rich Low_complexity Low_complexity 1 26 0 609 271 61 11 chr4 196631839 196632020 -5696327 - MIR SINE MIR -50 212 23 180 296 139 26 chr4 196633369 196633484 -5694863 - MIR SINE MIR -49 213 86 242 299 23 35 chr4 196633570 196633657 -5694690 - MIR SINE MIR -149 113 28 2071 150 0 0 chr4 196633989 196634295 -5694052 + AluJb SINE Alu 1 306 -6 882 159 88 6 chr4 196634543 196634713 -5693634 + AluSg/x SINE Alu 122 305 -7 1390 154 97 30 chr4 196634715 196634982 -5693365 + AluJb SINE Alu 1 285 -27 359 117 0 13 chr4 196634982 196635059 -5693288 + (CA)n Simple_repeat Simple_repeat 1 76 0 24 0 0 0 chr4 196635635 196635659 -5692688 + AT_rich Low_complexity Low_complexity 1 24 0 525 185 11 0 chr4 196637554 196637646 -5690701 + AluJ/FLAM SINE Alu 1 93 -219 46 19 0 0 chr4 196637653 196637706 -5690641 + AT_rich Low_complexity Low_complexity 1 53 0 261 218 63 7 chr4 196637764 196637906 -5690441 + (TA)n Simple_repeat Simple_repeat 1 150 0 2456 103 9 0 chr4 196637934 196638273 -5690074 + L1PA8A LINE L1 5500 5841 -290 852 70 62 39 chr4 196638331 196638460 -5689887 + AluY SINE Alu 1 132 -179 1629 42 0 5 chr4 196638482 196638674 -5689673 + AluY SINE Alu 116 306 -5 455 247 82 57 chr4 196639889 196640047 -5688300 - MIR3 SINE MIR -23 185 24 191 295 16 0 chr4 196640411 196640472 -5687875 + MIR SINE MIR 59 120 -142 2387 99 0 0 chr4 196641475 196641779 -5686568 + AluSx SINE Alu 1 304 -8 223 313 17 43 chr4 196642599 196642714 -5685633 + L2 LINE L2 3202 3313 0 355 271 89 44 chr4 196646543 196646746 -5681601 + L1ME LINE L1 5485 5696 -425 867 162 187 0 chr4 196646764 196646962 -5681385 + MER46A DNA MER2_type 1 235 -1 1986 114 32 4 chr4 196649652 196649932 -5678415 + AluSx SINE Alu 7 294 -18 970 203 90 0 chr4 196650008 196650264 -5678083 + MER33 DNA MER1_type 46 324 0 1746 159 13 35 chr4 196650752 196651066 -5677281 + AluJo SINE Alu 4 310 -2 2366 8 0 0 chr4 196651535 196651814 -5676533 - AluY SINE Alu 0 307 29 801 254 118 23 chr4 196652550 196652983 -5675364 + MLT1H LTR MaLR 71 544 -5 2056 121 4 0 chr4 196653911 196654227 -5674120 + AluSx SINE Alu 1 317 0 208 296 185 0 chr4 196654819 196654927 -5673420 - L2 LINE L2 -1 3312 3185 25 31 0 0 chr4 196654959 196654991 -5673356 + AT_rich Low_complexity Low_complexity 1 32 0 387 0 0 0 chr4 196654991 196655034 -5673313 + (CA)n Simple_repeat Simple_repeat 2 44 0 2091 118 3 0 chr4 196655034 196655321 -5673026 - AluSq SINE Alu -25 288 1 1779 167 3 20 chr4 196655972 196656265 -5672082 + AluSx SINE Alu 1 288 -24 225 0 0 0 chr4 196656265 196656290 -5672057 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 639 226 156 10 chr4 196656465 196656664 -5671683 - MER8 DNA MER2_type -8 231 4 212 273 0 0 chr4 196656969 196657013 -5671334 + (CAT)n Simple_repeat Simple_repeat 3 46 0 466 276 111 0 chr4 196659910 196660091 -5668256 + MIR SINE MIR 62 262 0 1836 122 30 26 chr4 196664173 196664476 -5663871 - AluJo SINE Alu -8 304 1 248 297 68 25 chr4 196664809 196664927 -5663420 - L2 LINE L2 -16 3256 3134 270 302 90 23 chr4 196665090 196665271 -5663076 - MIR SINE MIR -63 199 3 2208 106 0 7 chr4 196670869 196671171 -5657176 + AluSx SINE Alu 1 300 -12 591 233 59 59 chr4 196671656 196671892 -5656455 - L2 LINE L2 -1 3312 3077 430 265 0 60 chr4 196671963 196672114 -5656233 - MER20 DNA MER1_type -76 143 2 2863 204 122 15 chr4 196672220 196672892 -5655455 - L1MC3 LINE L1 0 7785 7031 1588 132 34 128 chr4 196672892 196673219 -5655128 - AluJb SINE Alu -6 296 1 2863 204 122 15 chr4 196673219 196673261 -5655086 - L1MC3 LINE L1 -754 7031 6995 770 282 169 40 chr4 196673274 196673972 -5654375 - L2 LINE L2 -529 2785 1998 2271 77 0 7 chr4 196674032 196674330 -5654017 + AluSc SINE Alu 1 296 -13 1694 140 40 4 chr4 196675682 196675954 -5652393 - AluJb SINE Alu -30 282 1 183 42 0 0 chr4 196676014 196676038 -5652309 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1626 157 72 0 chr4 196676040 196676302 -5652045 - AluSx SINE Alu -30 282 2 2387 67 0 3 chr4 196677623 196677934 -5650413 + AluSc SINE Alu 1 310 0 367 247 118 0 chr4 196678616 196678709 -5649638 - MER2 DNA MER2_type -240 105 2 280 340 82 13 chr4 196678813 196678972 -5649375 + MIR3 SINE MIR 16 185 -23 343 318 155 43 chr4 196679726 196680003 -5648344 + L2 LINE L2 2934 3241 -31 1984 113 38 0 chr4 196681081 196681374 -5646973 - AluSp SINE Alu -9 304 1 26 0 0 0 chr4 196682862 196682888 -5645459 + GC_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr4 196683062 196683097 -5645250 + GC_rich Low_complexity Low_complexity 1 35 0 31 0 0 0 chr4 196683125 196683156 -5645191 + GC_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr4 196683432 196683456 -5644891 + (A)n Simple_repeat Simple_repeat 1 24 0 203 263 138 0 chr4 196687083 196687163 -5641184 + MIR SINE MIR 82 172 -90 239 108 0 0 chr4 196687442 196687479 -5640868 - Alu SINE Alu -90 212 176 551 243 112 6 chr4 196687975 196688144 -5640203 - MER3 DNA MER1_type -16 193 7 238 213 0 0 chr4 196688267 196688314 -5640033 - L2 LINE L2 0 3313 3267 2295 96 3 0 chr4 196688722 196689015 -5639332 + AluSx SINE Alu 1 294 -18 2256 111 0 3 chr4 196689682 196689979 -5638368 + AluSx SINE Alu 1 296 -16 341 296 30 35 chr4 196690081 196690250 -5638097 - MIR SINE MIR -10 252 85 280 285 163 8 chr4 196691018 196691141 -5637206 + MLT1L LTR MaLR 149 290 -325 1503 223 46 46 chr4 196691626 196692016 -5636331 - MLT1B LTR MaLR 0 390 1 2244 62 0 81 chr4 196692454 196692776 -5635571 + AluY SINE Alu 1 296 -15 828 223 36 30 chr4 196692994 196693328 -5635019 - MER31A LTR ERV1 -32 453 1 1351 233 118 40 chr4 196693690 196693823 -5634524 + MLT1F LTR MaLR 16 137 -405 1760 218 58 8 chr4 196693823 196694200 -5634147 - MSTD LTR MaLR 0 396 1 1351 233 118 40 chr4 196694200 196694547 -5633800 + MLT1F LTR MaLR 137 534 -8 823 175 120 6 chr4 196694704 196694887 -5633460 + MER3 DNA MER1_type 6 209 0 229 282 28 0 chr4 196694832 196694903 -5633444 - MER3 DNA MER1_type -105 104 32 * 1983 106 0 11 chr4 196695565 196695830 -5632517 - AluSx SINE Alu -27 285 24 331 301 66 35 chr4 196696015 196696241 -5632106 + L1ME3A LINE L1 4935 5167 -979 1905 103 16 0 chr4 196696326 196696578 -5631769 + AluSx SINE Alu 56 311 -1 1453 212 82 25 chr4 196696694 196697095 -5631252 + MLT1C LTR MaLR 44 467 0 1641 177 3 14 chr4 196697113 196697407 -5630940 - AluJb SINE Alu -21 291 1 901 289 78 40 chr4 196697408 196697885 -5630462 + L1ME3A LINE L1 5389 5883 -287 2092 105 3 33 chr4 196697970 196698274 -5630073 - AluSp SINE Alu -5 308 14 2044 125 0 14 chr4 196698449 196698792 -5629555 + AluSx SINE Alu 1 339 0 293 200 0 18 chr4 196699348 196699403 -5628944 + LTR33 LTR ERVL 468 521 0 466 258 23 0 chr4 196699550 196699682 -5628665 + MER5A DNA MER1_type 54 188 -1 280 297 181 17 chr4 196699699 196699931 -5628416 - LTR33 LTR ERVL -115 406 137 2032 108 0 0 chr4 196700421 196700689 -5627658 - AluSp SINE Alu -1 312 45 532 108 0 0 chr4 196700689 196700763 -5627584 - AluS SINE Alu -238 75 2 1909 165 0 0 chr4 196701345 196701636 -5626711 - AluJb SINE Alu -21 291 1 396 242 181 0 chr4 196703124 196703273 -5625074 + MIR SINE MIR 67 242 -20 700 241 5 31 chr4 196703971 196704162 -5624185 - MER5A DNA MER1_type -2 187 2 411 296 34 34 chr4 196704284 196704490 -5623857 + MER63A DNA MER1_type 5 210 0 924 171 39 17 chr4 196704665 196704846 -5623501 - LTR32 LTR ERVL 0 471 287 1687 162 31 3 chr4 196704950 196705240 -5623107 - LTR32 LTR ERVL -159 312 15 312 304 22 36 chr4 196705280 196705418 -5622929 + L1ME LINE L1 1 136 -5934 1960 150 10 7 chr4 196705634 196705934 -5622413 - AluSx SINE Alu -11 301 1 297 171 98 37 chr4 196705984 196706066 -5622281 + MLT1J2 LTR MaLR 364 450 0 1641 137 46 42 chr4 196706372 196706656 -5621691 - AluJo SINE Alu -24 288 4 263 284 21 46 chr4 196707342 196707482 -5620865 + MER5B DNA MER1_type 4 151 -38 4191 105 5 3 chr4 196707528 196708126 -5620221 - L1PA13 LINE L1 0 6163 5565 195 69 0 0 chr4 196708673 196708702 -5619645 + (TG)n Simple_repeat Simple_repeat 1 29 0 1623 246 87 78 chr4 196709406 196710315 -5618032 + L1MC5 LINE L1 6772 7694 -267 2267 100 3 0 chr4 196710315 196710606 -5617741 - AluSx SINE Alu -20 292 1 1623 246 87 78 chr4 196710606 196710822 -5617525 + L1MC5 LINE L1 7694 7907 -54 531 280 63 6 chr4 196711438 196711613 -5616734 + MIR3 SINE MIR 21 205 -3 250 364 0 0 chr4 196711781 196711899 -5616448 - MIR SINE MIR -55 207 90 2308 97 23 0 chr4 196712804 196713103 -5615244 - AluSq SINE Alu -7 306 1 186 103 0 0 chr4 196713261 196713290 -5615057 + (TTTTTG)n Simple_repeat Simple_repeat 1 29 0 30 0 0 0 chr4 196714263 196714293 -5614054 + AT_rich Low_complexity Low_complexity 1 30 0 964 177 33 33 chr4 196714501 196714716 -5613631 - MER20 DNA MER1_type -4 215 1 233 305 104 13 chr4 196715007 196715161 -5613186 + L2 LINE L2 2109 2276 -1038 3310 60 35 0 chr4 196715655 196716088 -5612259 - L1PA7 LINE L1 0 6154 5707 240 291 132 75 chr4 196716135 196716400 -5611947 + L2 LINE L2 2945 3224 -48 234 172 156 16 chr4 196716420 196716484 -5611863 + L1ME4a LINE L1 5910 5982 -139 716 145 73 0 chr4 196716742 196716866 -5611481 - FLAM_C SINE Alu 0 133 1 23 0 0 0 chr4 196717264 196717287 -5611060 + AT_rich Low_complexity Low_complexity 1 23 0 2289 119 0 0 chr4 196717599 196717910 -5610437 - AluSx SINE Alu -1 311 1 2570 110 3 3 chr4 196718203 196718558 -5609789 - THE1A LTR MaLR 0 355 1 304 230 80 20 chr4 196718604 196718704 -5609643 + MIR SINE MIR 72 177 -85 180 0 0 0 chr4 196719061 196719081 -5609266 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr4 196719778 196719800 -5608547 + AT_rich Low_complexity Low_complexity 1 22 0 313 281 11 0 chr4 196720723 196720812 -5607535 - MIR SINE MIR 0 262 173 1949 160 10 0 chr4 196721298 196721591 -5606756 - AluJb SINE Alu -16 296 1 2254 113 0 0 chr4 196723050 196723396 -5604951 + AluSx SINE Alu 1 346 0 1496 161 99 4 chr4 196723783 196724056 -5604291 - AluJo SINE Alu -11 301 3 2187 104 4 0 chr4 196725679 196725981 -5602366 + AluSx SINE Alu 1 303 0 1925 135 0 45 chr4 196726464 196726776 -5601571 - AluJb SINE Alu -14 298 1 339 276 87 32 chr4 196727114 196727326 -5601021 + MLT1J LTR MaLR 9 190 -256 10455 27 10 0 chr4 196727325 196729327 -5599020 + L1PA4 LINE L1 4145 6155 0 3892 226 89 21 chr4 196729447 196730659 -5597688 + Charlie1a DNA MER1_type 1 1295 -160 1608 229 59 45 chr4 196730659 196731148 -5597199 + MLT1D LTR MaLR 1 496 -9 527 225 39 0 chr4 196731181 196731310 -5597037 + Charlie1a DNA MER1_type 1322 1455 0 384 276 32 43 chr4 196731319 196731504 -5596843 + MLT1J LTR MaLR 329 511 0 191 332 16 45 chr4 196731914 196732059 -5596288 - MIR SINE MIR -65 143 50 382 297 14 14 chr4 196733182 196733327 -5595020 + MLT1J1 LTR MaLR 233 377 -69 2281 107 3 0 chr4 196733942 196734251 -5594096 - AluSx SINE Alu -2 310 1 209 326 21 56 chr4 196735180 196735324 -5593023 + L2 LINE L2 2872 3010 -262 291 234 149 28 chr4 196735476 196735583 -5592764 + MIR SINE MIR 51 170 -92 2201 104 0 3 chr4 196735951 196736240 -5592107 - AluSx SINE Alu -24 288 1 244 61 0 0 chr4 196737996 196738029 -5590318 + THE1C-int LTR MaLR 785 817 -763 * 2778 108 7 12 chr4 196738027 196738455 -5589892 + THE1C-int LTR MaLR 1155 1580 0 1777 146 56 61 chr4 196738455 196738832 -5589515 + THE1C LTR MaLR 1 375 0 2023 122 31 0 chr4 196739062 196739349 -5588998 - AluSx SINE Alu -16 296 1 187 222 32 79 chr4 196739396 196739459 -5588888 - L2 LINE L2 0 3272 3213 26 50 0 0 chr4 196741078 196741118 -5587229 + AT_rich Low_complexity Low_complexity 1 40 0 27 49 0 0 chr4 196741293 196741334 -5587013 + AT_rich Low_complexity Low_complexity 1 41 0 1555 176 28 42 chr4 196741592 196741949 -5586398 + MLT1A1 LTR MaLR 1 352 -13 205 316 114 0 chr4 196742714 196742793 -5585554 - L2 LINE L2 0 3313 3226 2231 81 3 7 chr4 196743029 196743324 -5585023 + AluSc SINE Alu 1 294 -15 270 209 88 33 chr4 196743410 196743501 -5584846 - MLT1L LTR MaLR -517 98 3 1301 187 92 14 chr4 196743547 196743572 -5584775 - L1MA9 LINE L1 0 6312 6290 2668 137 11 56 chr4 196743572 196744105 -5584242 - L1MA7 LINE L1 -12 6279 5771 1301 187 92 14 chr4 196744105 196744426 -5583921 - L1MA9 LINE L1 -22 6290 5939 2282 148 18 28 chr4 196744445 196744736 -5583611 - L1MA7 LINE L1 -528 5763 5494 2092 104 31 7 chr4 196744736 196745025 -5583322 - AluSq SINE Alu -17 296 1 2282 148 18 28 chr4 196745025 196745227 -5583120 - L1MA7 LINE L1 -797 5494 5291 1129 199 20 92 chr4 196745227 196745619 -5582728 - MLT1A1 LTR MaLR 0 365 2 2326 117 0 0 chr4 196745937 196746245 -5582102 - AluSx SINE Alu -4 308 1 195 317 148 55 chr4 196746258 196746766 -5581581 - L2 LINE L2 -609 2705 2151 2186 111 3 0 chr4 196747292 196747589 -5580758 - AluSq SINE Alu -15 298 1 23 0 0 0 chr4 196747683 196747706 -5580641 + AT_rich Low_complexity Low_complexity 1 23 0 279 263 56 31 chr4 196749502 196749631 -5578716 - MER5A DNA MER1_type -35 154 14 333 254 9 9 chr4 196750030 196750140 -5578207 - L1ME LINE L1 -436 5685 5576 699 161 42 0 chr4 196750286 196750404 -5577943 + FLAM_C SINE Alu 2 124 -19 238 358 25 17 chr4 196750423 196750543 -5577804 - MIR SINE MIR -130 132 12 340 241 13 0 chr4 196750545 196750624 -5577723 - L1ME LINE L1 -547 5574 5495 2029 68 22 96 chr4 196750636 196750958 -5577389 - AluYb8 SINE Alu -4 314 17 2168 82 0 7 chr4 196751264 196751546 -5576801 - AluY SINE Alu -18 293 14 221 315 56 46 chr4 196751632 196751740 -5576607 + L2 LINE L2 3203 3311 -2 290 342 13 0 chr4 196751801 196751880 -5576467 - L2 LINE L2 -2 3270 3191 1183 200 16 16 chr4 196752206 196752451 -5575896 - LTR10B LTR ERV1 0 547 303 833 241 58 113 chr4 196753818 196754508 -5573839 - L1MC5 LINE L1 -60 7901 7250 907 226 67 0 chr4 196755438 196755646 -5572701 - MER58A DNA MER1_type 0 224 3 2160 104 7 0 chr4 196756324 196756603 -5571744 + AluSx SINE Alu 21 301 -11 248 262 0 0 chr4 196758128 196758189 -5570158 + (TA)n Simple_repeat Simple_repeat 1 61 0 6043 138 90 17 chr4 196758832 196759978 -5568369 - Tigger3b DNA MER2_type 0 1231 2 27 0 0 0 chr4 196760013 196760040 -5568307 + AT_rich Low_complexity Low_complexity 1 27 0 1259 255 59 13 chr4 196760057 196760531 -5567816 - L1ME3A LINE L1 -36 6134 5639 294 231 9 19 chr4 196760593 196760701 -5567646 - L1MEc LINE L1 -5503 893 787 27 0 0 0 chr4 196761449 196761476 -5566871 + AT_rich Low_complexity Low_complexity 1 27 0 226 292 58 60 chr4 196761623 196761807 -5566540 - MIR SINE MIR -56 152 4 4537 151 49 11 chr4 196761980 196762776 -5565571 - LTR1B LTR ERV1 0 826 1 696 242 6 16 chr4 196763476 196763658 -5564689 - AluJo SINE Alu -11 301 122 424 337 72 60 chr4 196763877 196764013 -5564334 + L3 LINE CR1 1303 1446 -131 1693 182 4 0 chr4 196764013 196764337 -5564010 + AluJb SINE Alu 3 327 0 424 337 72 60 chr4 196764337 196764448 -5563899 + L3 LINE CR1 1446 1554 -23 1947 76 19 95 chr4 196765430 196765747 -5562600 - AluYb8 SINE Alu -9 309 17 1295 105 62 9 chr4 196765883 196766093 -5562254 - L1PA8 LINE L1 0 6172 5952 320 325 162 11 chr4 196766471 196766662 -5561685 + L1ME LINE L1 5597 5816 -305 299 351 27 0 chr4 196766679 196766790 -5561557 + L2 LINE L2 3192 3305 -8 1160 168 61 109 chr4 196766794 196767281 -5561066 - MER66A LTR ERV1 -17 461 97 829 285 12 16 chr4 196767331 196767580 -5560767 - MIR SINE MIR -2 260 13 1704 184 7 10 chr4 196767761 196768060 -5560287 + AluJo SINE Alu 1 298 -14 2481 78 0 0 chr4 196768567 196768876 -5559471 - AluSg SINE Alu -1 309 1 1237 230 117 33 chr4 196769129 196769596 -5558751 - MER39 LTR ERV1 -1 706 5 2291 106 3 0 chr4 196769825 196770126 -5558221 + AluSg SINE Alu 1 302 -8 262 340 39 0 chr4 196770425 196770528 -5557819 - MIR SINE MIR -49 213 107 2200 135 0 0 chr4 196771572 196771931 -5556416 - AluSx SINE Alu 0 359 1 200 196 39 0 chr4 196773810 196773861 -5554486 + L2 LINE L2 3261 3313 0 2448 68 0 0 chr4 196774305 196774600 -5553747 - AluY SINE Alu -16 295 1 4090 219 55 29 chr4 196774605 196775890 -5552457 - L1M4 LINE L1 -745 5637 4320 338 295 57 33 chr4 196775887 196776219 -5552128 - L1MEc LINE L1 -4963 1421 1082 * 525 279 77 24 chr4 196776223 196776470 -5551877 - L1MEc LINE L1 -5767 796 537 1003 186 31 10 chr4 196776524 196776718 -5551629 - MER58A DNA MER1_type -13 211 14 384 170 11 92 chr4 196777930 196778039 -5550308 - MER21A LTR ERV1 -3 914 764 2947 180 88 39 chr4 196778323 196779017 -5549330 - MER21B LTR ERV1 -121 742 15 267 336 53 30 chr4 196779023 196779154 -5549193 + L2 LINE L2 3139 3272 0 342 247 84 78 chr4 196779729 196779883 -5548464 - L1MEd LINE L1 -3260 2869 2715 198 0 0 0 chr4 196780049 196780071 -5548276 + (T)n Simple_repeat Simple_repeat 1 22 0 578 260 77 15 chr4 196780139 196780335 -5548012 - MER63A DNA MER1_type -2 208 1 264 325 36 0 chr4 196780438 196780521 -5547826 - L1MEd LINE L1 -5470 649 564 1251 263 91 19 chr4 196780582 196781122 -5547225 + L1ME3A LINE L1 5590 6168 -2 249 197 16 16 chr4 196781319 196781380 -5546967 - L1MEd LINE L1 -5743 376 316 258 341 30 0 chr4 196781526 196781658 -5546689 - L1MEd LINE L1 -5981 138 3 214 280 0 53 chr4 196781882 196781957 -5546390 + MIR3 SINE MIR 121 191 -17 32 0 0 0 chr4 196782013 196782045 -5546302 + AT_rich Low_complexity Low_complexity 1 32 0 315 0 0 0 chr4 196784834 196784869 -5543478 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1051 104 6 64 chr4 196784871 196785044 -5543303 - AluSc SINE Alu -53 256 94 791 124 25 0 chr4 196785044 196785165 -5543182 - AluSq/x SINE Alu -184 129 6 806 181 57 6 chr4 196785221 196785398 -5542949 - L1M4 LINE L1 -1039 5107 4922 849 142 0 8 chr4 196785648 196785782 -5542565 + AluJ SINE Alu 1 133 -169 552 270 107 10 chr4 196785838 196786034 -5542313 + MIR SINE MIR 42 256 -6 2251 110 7 0 chr4 196786035 196786327 -5542020 + AluSx SINE Alu 1 294 -18 228 163 0 0 chr4 196786490 196786533 -5541814 + (TA)n Simple_repeat Simple_repeat 1 43 0 913 185 7 0 chr4 196786663 196786809 -5541538 + AluJ SINE Alu 129 275 -37 205 264 0 19 chr4 196787204 196787257 -5541090 - L2 LINE L2 -7 3306 3255 507 225 176 9 chr4 196787744 196787911 -5540436 + L2 LINE L2 1190 1404 -1910 1515 194 159 0 chr4 196787911 196788226 -5540121 + MLT1A1 LTR MaLR 1 365 0 507 225 176 9 chr4 196788226 196788280 -5540067 + L2 LINE L2 1404 1448 -1866 2257 236 37 10 chr4 196788364 196788957 -5539390 + MLT1E2 LTR MaLR 1 609 -17 2331 261 90 25 chr4 196788972 196789819 -5538528 + L2 LINE L2 1561 2462 -852 2174 320 86 26 chr4 196790590 196792451 -5535896 + ERVL LTR ERVL 3328 5284 -201 216 0 0 0 chr4 196793884 196793908 -5534439 + (GA)n Simple_repeat Simple_repeat 1 24 0 454 269 96 36 chr4 196794386 196794605 -5533742 + MIR SINE MIR 1 232 -30 24 53 0 0 chr4 196795020 196795058 -5533289 + AT_rich Low_complexity Low_complexity 1 38 0 264 306 0 24 chr4 196795749 196795834 -5532513 + CT-rich Low_complexity Low_complexity 4 86 0 331 345 7 36 chr4 196796158 196796297 -5532050 + MIR3 SINE MIR 20 154 -54 306 0 0 0 chr4 196796309 196796343 -5532004 + (TTA)n Simple_repeat Simple_repeat 3 36 0 3011 39 8 0 chr4 196796343 196796706 -5531641 - L1PA3 LINE L1 -18 6137 5772 228 86 0 0 chr4 196797517 196797552 -5530795 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 778 214 114 23 chr4 196797847 196798067 -5530280 + MIR SINE MIR 20 259 -3 196 279 139 8 chr4 196798068 196798190 -5530157 - MIR SINE MIR -41 221 84 191 232 18 0 chr4 196798219 196798275 -5530072 + CT-rich Low_complexity Low_complexity 5 61 0 273 306 9 9 chr4 196799604 196799715 -5528632 + A-rich Low_complexity Low_complexity 3 113 0 490 198 23 23 chr4 196799927 196800104 -5528243 + CT-rich Low_complexity Low_complexity 1 177 0 8882 31 3 0 chr4 196800788 196802625 -5525722 - L1PA4 LINE L1 0 6155 4313 773 219 52 0 chr4 196802942 196803134 -5525213 + MER20 DNA MER1_type 1 202 -17 682 200 69 28 chr4 196803367 196803512 -5524835 - FRAM SINE Alu -15 151 1 1740 197 0 0 chr4 196805418 196805717 -5522630 - AluJo SINE Alu -13 299 1 21 0 0 0 chr4 196805985 196806006 -5522341 + AT_rich Low_complexity Low_complexity 1 21 0 1653 215 46 82 chr4 196807064 196807254 -5521093 + L1MC4 LINE L1 7370 7565 -477 3773 14 25 0 chr4 196807254 196807695 -5520652 + L1PA2 LINE L1 5704 6155 0 1653 215 46 82 chr4 196807695 196808041 -5520306 + L1MC4 LINE L1 7565 7878 -164 663 21 21 11 chr4 196808041 196808135 -5520212 + (TCTA)n Simple_repeat Simple_repeat 3 97 0 1653 215 46 82 chr4 196808135 196808295 -5520052 + L1MC4 LINE L1 7878 8042 0 21 36 0 0 chr4 196808383 196808411 -5519936 + AT_rich Low_complexity Low_complexity 1 28 0 2287 116 3 3 chr4 196808948 196809259 -5519088 + AluSq SINE Alu 1 311 -2 1024 289 109 52 chr4 196810034 196811174 -5517173 - L1MEd LINE L1 -4911 1208 4 21 0 0 0 chr4 196813380 196813401 -5514946 + AT_rich Low_complexity Low_complexity 1 21 0 625 284 125 73 chr4 196813759 196814318 -5514029 + MLT1K LTR MaLR 1 588 0 1655 164 116 3 chr4 196815025 196815354 -5512993 - MER47A DNA MER2_type 0 366 1 489 320 89 43 chr4 196816029 196816492 -5511855 - MLT1K LTR MaLR 0 588 105 556 265 7 41 chr4 196816785 196816932 -5511415 + MER5A DNA MER1_type 45 186 -3 856 263 9 5 chr4 196817996 196818209 -5510138 - MIR SINE MIR -44 218 5 2084 123 98 25 chr4 196818873 196819272 -5509075 + MSTA LTR MaLR 1 428 0 489 298 167 8 chr4 196819489 196819741 -5508606 - L1ME4a LINE L1 -127 5977 5686 22 0 0 0 chr4 196819780 196819802 -5508545 + AT_rich Low_complexity Low_complexity 1 22 0 2237 102 3 3 chr4 196819802 196820096 -5508251 - AluSp SINE Alu -19 294 1 942 199 6 0 chr4 196820101 196820277 -5508070 + MER58A DNA MER1_type 46 222 -2 409 276 194 46 chr4 196822070 196822287 -5506060 + MIR SINE MIR 14 262 0 272 351 221 15 chr4 196823496 196823821 -5504526 + L2 LINE L2 2856 3247 -25 218 32 32 0 chr4 196823822 196823853 -5504494 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 259 312 55 0 chr4 196824952 196825061 -5503286 + MER20 DNA MER1_type 101 215 -4 572 287 87 34 chr4 196825173 196825703 -5502644 - L1ME4a LINE L1 -907 5222 4645 2060 131 14 0 chr4 196825703 196825994 -5502353 - AluSx SINE Alu -17 295 1 572 287 87 34 chr4 196825994 196826163 -5502184 - L1ME4a LINE L1 -1484 4645 4486 1461 166 3 124 chr4 196826942 196827280 -5501067 - AluSq SINE Alu -4 299 3 726 295 95 48 chr4 196827319 196828751 -5499596 - L1ME4a LINE L1 -1898 4231 2654 285 83 0 0 chr4 196828751 196828787 -5499560 - LTR8 LTR ERV1 -107 584 549 726 295 95 48 chr4 196828787 196829209 -5499138 - L1ME4a LINE L1 -3475 2654 2253 30 45 0 0 chr4 196829282 196829326 -5499021 + AT_rich Low_complexity Low_complexity 1 44 0 2266 99 10 0 chr4 196829695 196829989 -5498358 + AluSx SINE Alu 1 297 -15 4124 193 26 50 chr4 196830043 196831027 -5497320 - L1MA9 LINE L1 -38 6274 5314 1487 222 69 113 chr4 196831132 196831612 -5496735 - L1ME3 LINE L1 -3 6159 5783 3726 131 13 2 chr4 196831612 196832133 -5496214 + MER1A DNA MER1_type 1 527 0 1487 222 69 113 chr4 196832133 196832511 -5495836 - L1ME3 LINE L1 -379 5783 5390 1157 135 16 31 chr4 196832511 196832703 -5495644 - AluSg/x SINE Alu -3 309 121 322 198 33 0 chr4 196832705 196832796 -5495551 - L1ME3 LINE L1 -788 5374 5281 250 320 74 17 chr4 196832837 196833068 -5495279 - HAL1 LINE L1 -911 1596 1353 487 337 87 15 chr4 196833089 196833353 -5494994 - L1ME4a LINE L1 -4923 1196 914 307 338 84 14 chr4 196833412 196833625 -5494722 - L1ME4a LINE L1 -5282 837 610 24 0 0 0 chr4 196834551 196834575 -5493772 + AT_rich Low_complexity Low_complexity 1 24 0 213 276 152 9 chr4 196834992 196835097 -5493250 - MIR SINE MIR -71 191 72 183 129 0 0 chr4 196835197 196835228 -5493119 + (T)n Simple_repeat Simple_repeat 1 31 0 37 52 0 0 chr4 196836044 196836102 -5492245 + AT_rich Low_complexity Low_complexity 1 58 0 927 202 0 0 chr4 196836367 196836806 -5491541 + (TG)n Simple_repeat Simple_repeat 1 439 0 678 255 58 5 chr4 196838345 196838533 -5489814 + MLT1H LTR MaLR 47 244 -305 275 195 78 39 chr4 196838642 196838719 -5489628 + MLT1G LTR MaLR 495 574 -16 304 272 63 47 chr4 196838956 196839097 -5489250 + LTR67 LTR ERVL 364 510 -47 2002 122 96 34 chr4 196839097 196839450 -5488897 + THE1C LTR MaLR 1 375 0 304 272 63 47 chr4 196839450 196839499 -5488848 + LTR67 LTR ERVL 510 557 0 529 360 70 29 chr4 196839715 196840171 -5488176 - L2 LINE L2 0 3313 2839 1060 295 120 28 chr4 196842312 196843978 -5484369 - L1ME3 LINE L1 -296 5866 4038 242 250 0 0 chr4 196844611 196844663 -5483684 - LTR67 LTR ERVL -177 380 329 26 50 0 0 chr4 196844687 196844727 -5483620 + AT_rich Low_complexity Low_complexity 1 40 0 3325 167 14 42 chr4 196844732 196845373 -5482974 - L1PB4 LINE L1 0 6156 5534 1457 155 55 10 chr4 196845750 196846040 -5482307 + AluJo SINE Alu 9 311 -1 1005 96 13 13 chr4 196847927 196848083 -5480264 + AluY SINE Alu 146 301 -10 360 305 0 14 chr4 196848180 196848321 -5480026 + CT-rich Low_complexity Low_complexity 2 140 0 6174 141 237 31 chr4 196849005 196850411 -5477936 + pTR5 LTR ERV1 743 2438 0 378 182 0 0 chr4 196850437 196850503 -5477844 - MADE1 DNA Mariner -14 66 1 245 283 43 91 chr4 196850505 196850692 -5477655 - MLT1J LTR MaLR -104 407 230 184 383 21 47 chr4 196850948 196851141 -5477206 + L2 LINE L2 2455 2642 -672 653 208 35 66 chr4 196851780 196851977 -5476370 - MIR SINE MIR -35 227 37 251 272 0 79 chr4 196852069 196852183 -5476164 - MIR SINE MIR -56 206 102 301 328 67 0 chr4 196852183 196852302 -5476045 - MIR3 SINE MIR -6 202 76 323 271 93 16 chr4 196852344 196852473 -5475874 + MIR SINE MIR 64 202 -60 344 365 6 12 chr4 196853138 196853305 -5475042 - MIR SINE MIR -20 242 77 615 271 86 43 chr4 196853450 196853753 -5474594 - HAL1 LINE L1 -17 2490 2175 2042 218 95 0 chr4 196853824 196854296 -5474051 + LTR53 LTR ERVL 3 519 0 1564 242 67 26 chr4 196854460 196854924 -5473423 - HAL1 LINE L1 -845 1662 1169 1788 137 68 3 chr4 196854924 196855217 -5473130 - AluSx SINE Alu 0 312 1 1564 242 67 26 chr4 196855217 196855323 -5473024 - HAL1 LINE L1 -1338 1169 1069 408 263 75 19 chr4 196855347 196855507 -5472840 - HAL1 LINE L1 -1706 801 633 254 266 12 130 chr4 196855589 196855758 -5472589 - HAL1 LINE L1 -2311 196 48 378 226 44 36 chr4 196856250 196856387 -5471960 - L1ME4a LINE L1 -15 6106 5969 2246 107 0 19 chr4 196856702 196857021 -5471326 - AluSp SINE Alu 0 313 1 3934 21 0 0 chr4 196857110 196857541 -5470806 + L1PA2 LINE L1 5721 6151 -4 238 87 43 0 chr4 196858026 196858072 -5470275 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 187 388 60 0 chr4 196858099 196858166 -5470181 + L2 LINE L2 3198 3268 -4 1777 148 7 20 chr4 196858594 196858892 -5469455 + AluSx SINE Alu 1 294 -18 1914 153 7 0 chr4 196859325 196859612 -5468735 + AluSx SINE Alu 1 289 -23 281 276 0 82 chr4 196860284 196860382 -5467965 - MIR SINE MIR -78 130 41 2359 96 7 0 chr4 196860471 196860774 -5467573 - AluSc SINE Alu -4 305 1 207 397 26 45 chr4 196863800 196863956 -5464391 - L3 LINE CR1 0 1577 1425 641 233 108 15 chr4 196863956 196864305 -5464042 - MLT1C LTR MaLR 0 467 81 227 100 0 25 chr4 196864305 196864345 -5464002 + (TTTC)n Simple_repeat Simple_repeat 4 42 0 2122 115 6 34 chr4 196864352 196864852 -5463495 - AluSp SINE Alu 0 313 1 346 180 33 53 chr4 196864852 196864946 -5463401 - MLT1D LTR MaLR -295 95 2 236 294 49 29 chr4 196865437 196865539 -5462808 - L3 LINE CR1 -215 1362 1259 2350 88 0 3 chr4 196865587 196865882 -5462465 + AluSg SINE Alu 1 294 -16 2380 46 0 17 chr4 196866278 196866580 -5461767 - AluY SINE Alu -14 297 1 346 303 111 11 chr4 196868466 196868737 -5459610 - L1MC4a LINE L1 -1887 5921 5624 21 36 0 0 chr4 196869300 196869328 -5459019 + AT_rich Low_complexity Low_complexity 1 28 0 2230 94 3 0 chr4 196870718 196871004 -5457343 - AluSp SINE Alu -15 298 12 193 194 16 16 chr4 196871110 196871172 -5457175 + CT-rich Low_complexity Low_complexity 2 63 0 180 0 0 0 chr4 196872086 196872106 -5456241 + (T)n Simple_repeat Simple_repeat 1 20 0 1855 154 7 10 chr4 196873097 196873396 -5454951 + AluJb SINE Alu 5 302 -10 973 203 0 0 chr4 196873398 196873561 -5454786 + AluJo/FRAM SINE Alu 136 298 -14 345 207 101 69 chr4 196873811 196873942 -5454405 + MIR SINE MIR 55 191 -63 233 349 54 76 chr4 196876792 196877107 -5451240 - L2 LINE L2 -89 3183 2876 1243 66 0 0 chr4 196877188 196877340 -5451007 - AluY SINE Alu -4 307 156 293 274 32 114 chr4 196877475 196877694 -5450653 - MIR SINE MIR -5 257 57 1689 215 79 16 chr4 196880744 196881255 -5447092 + MER39 LTR ERV1 11 707 0 21 36 0 0 chr4 196881273 196881301 -5447046 + AT_rich Low_complexity Low_complexity 1 28 0 309 26 0 0 chr4 196881321 196881359 -5446988 + (TA)n Simple_repeat Simple_repeat 1 38 0 2191 110 7 3 chr4 196882199 196882498 -5445849 - AluSx SINE Alu -12 300 1 523 257 137 0 chr4 196883967 196884142 -5444205 + MIR SINE MIR 54 252 -10 281 143 0 0 chr4 196884524 196884573 -5443774 + (TCCC)n Simple_repeat Simple_repeat 2 50 0 695 93 0 10 chr4 196884574 196884671 -5443676 + MER4A LTR ERV1 3 98 -566 1781 139 17 24 chr4 196884711 196885005 -5443342 + MER4A LTR ERV1 372 663 -1 198 0 0 0 chr4 196885005 196885027 -5443320 + (TTCC)n Simple_repeat Simple_repeat 1 22 0 860 168 0 0 chr4 196885615 196885746 -5442601 + FLAM_C SINE Alu 1 131 -2 210 167 0 0 chr4 196885926 196885962 -5442385 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 667 287 75 51 chr4 196886040 196886549 -5441798 - L1ME LINE L1 -304 5817 5297 244 133 22 0 chr4 196886677 196886722 -5441625 - L1MA10 LINE L1 -1 6333 6288 1008 226 18 0 chr4 196886722 196886943 -5441404 - AluJo SINE Alu -85 227 3 483 193 0 0 chr4 196886946 196887034 -5441313 - L1MA10 LINE L1 -42 6292 6205 2475 102 48 26 chr4 196887035 196887387 -5440960 - THE1B LTR MaLR 0 364 5 4133 81 13 0 chr4 196887391 196887924 -5440423 - THE1B-int LTR MaLR 0 1580 1041 686 44 0 11 chr4 196887926 196888017 -5440330 + (TTTTC)n Simple_repeat Simple_repeat 5 94 0 474 65 0 0 chr4 196888017 196888079 -5440268 + (TC)n Simple_repeat Simple_repeat 2 63 0 1186 23 0 0 chr4 196888353 196888485 -5439862 + AluY SINE Alu 1 132 -179 2400 41 7 0 chr4 196888488 196888781 -5439566 + AluY SINE Alu 1 295 -16 27 49 0 0 chr4 196890230 196890271 -5438076 + AT_rich Low_complexity Low_complexity 1 41 0 2101 204 29 7 chr4 196891350 196891797 -5436550 + L1MC1 LINE L1 5873 6329 -4 221 95 0 24 chr4 196891809 196891851 -5436496 + (TA)n Simple_repeat Simple_repeat 1 41 0 23 54 0 0 chr4 196893537 196893574 -5434773 + AT_rich Low_complexity Low_complexity 1 37 0 231 208 14 28 chr4 196893964 196894036 -5434311 + (TA)n Simple_repeat Simple_repeat 1 71 0 801 192 0 0 chr4 196894691 196895016 -5433331 + (TG)n Simple_repeat Simple_repeat 1 325 0 1258 136 24 5 chr4 196895156 196895362 -5432985 + Tigger2 DNA MER2_type 1 210 -2508 824 173 39 28 chr4 196895331 196895510 -5432837 + Tigger2 DNA MER2_type 2538 2718 0 * 305 172 74 16 chr4 196895513 196895635 -5432712 + (TA)n Simple_repeat Simple_repeat 1 129 0 294 128 39 49 chr4 196895737 196895839 -5432508 + (TTATA)n Simple_repeat Simple_repeat 3 103 0 208 189 27 0 chr4 196895864 196895938 -5432409 + (TA)n Simple_repeat Simple_repeat 1 76 0 348 146 73 0 chr4 196895971 196896135 -5432212 + (TA)n Simple_repeat Simple_repeat 1 176 0 305 222 71 20 chr4 196896179 196896278 -5432069 - L1MC4 LINE L1 -1340 6702 6599 2199 119 0 3 chr4 196896326 196896621 -5431726 - AluSx SINE Alu -18 294 1 32 86 0 0 chr4 196897924 196898005 -5430342 + AT_rich Low_complexity Low_complexity 1 81 0 2498 81 0 0 chr4 196898671 196898981 -5429366 - AluSg SINE Alu 0 310 1 2004 133 24 0 chr4 196899584 196899878 -5428469 + AluSx SINE Alu 1 301 -11 1606 113 8 12 chr4 196900211 196900582 -5427765 - L1PA13 LINE L1 -687 5474 5104 4760 134 1 0 chr4 196900589 196901262 -5427085 + L1PA13 LINE L1 5488 6161 -2 186 43 0 0 chr4 196901294 196901317 -5427030 + (TTA)n Simple_repeat Simple_repeat 2 24 0 968 188 152 4 chr4 196901376 196901626 -5426721 - L1M4 LINE L1 -1593 4553 4267 26 82 0 0 chr4 196901626 196901687 -5426660 + AT_rich Low_complexity Low_complexity 1 61 0 2132 182 76 11 chr4 196901843 196902276 -5426071 + LOR1b LTR ERV1 1 461 0 22 0 0 0 chr4 196902338 196902360 -5425987 + AT_rich Low_complexity Low_complexity 1 22 0 296 292 241 20 chr4 196904477 196904672 -5423675 + MIR SINE MIR 2 239 -23 207 346 20 20 chr4 196904773 196904874 -5423473 + L2 LINE L2 2171 2271 -1043 440 309 67 77 chr4 196904903 196905308 -5423039 + L2 LINE L2 2871 3271 -1 731 222 60 81 chr4 196906282 196906530 -5421817 - MER112 DNA MER1_type -12 248 6 270 260 115 42 chr4 196906758 196906854 -5421493 - L2 LINE L2 -9 3304 3202 2195 105 3 0 chr4 196908209 196908495 -5419852 + AluSp SINE Alu 1 287 -26 254 29 29 0 chr4 196908499 196908534 -5419813 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 1700 161 8 0 chr4 196909303 196909570 -5418777 + AluJb SINE Alu 23 291 -21 462 216 201 90 chr4 196909578 196909991 -5418356 - MLT1H1 LTR MaLR -33 522 64 32 43 0 0 chr4 196910319 196910365 -5417982 + AT_rich Low_complexity Low_complexity 1 46 0 702 188 69 8 chr4 196910414 196910576 -5417771 - LTR40b LTR ERVL 0 462 308 1018 268 37 27 chr4 196910677 196911148 -5417199 - LTR40a LTR ERVL -94 425 5 1523 237 69 16 chr4 196911750 196912126 -5416221 - MSTD LTR MaLR 0 396 1 2147 135 3 6 chr4 196912459 196912770 -5415577 - AluSx SINE Alu -2 310 1 1964 185 31 8 chr4 196913610 196913967 -5414380 + MLT1A1 LTR MaLR 1 365 0 262 233 68 68 chr4 196914529 196914632 -5413715 - L2 LINE L2 -12 3301 3199 2017 112 56 0 chr4 196915191 196915494 -5412853 + L1MA5A LINE L1 5972 6291 -6 181 323 13 63 chr4 196915607 196915765 -5412582 - L2 LINE L2 -181 3091 2942 349 323 65 32 chr4 196916427 196916613 -5411734 - L2 LINE L2 -520 2794 2603 180 111 0 0 chr4 196917374 196917401 -5410946 + (T)n Simple_repeat Simple_repeat 1 27 0 1050 150 0 0 chr4 196918551 196918711 -5409636 - AluSg/x SINE Alu -16 294 135 2169 140 58 0 chr4 196920557 196920886 -5407461 - MER7A DNA MER2_type 0 346 1 320 224 13 13 chr4 196920958 196921034 -5407313 + MIR SINE MIR 73 148 -114 22 0 0 0 chr4 196921116 196921138 -5407209 + AT_rich Low_complexity Low_complexity 1 22 0 3842 166 35 20 chr4 196921217 196921957 -5406390 - L1MA4A LINE L1 -11 6292 5542 217 19 58 39 chr4 196923452 196923504 -5404843 + (TA)n Simple_repeat Simple_repeat 2 54 0 222 346 31 15 chr4 196923530 196923660 -5404687 - MIR3 SINE MIR 0 208 77 312 274 0 0 chr4 196924818 196924891 -5403456 - MIR3 SINE MIR -6 202 130 1912 143 7 0 chr4 196925823 196926110 -5402237 + AluSx SINE Alu 1 289 -23 2044 124 7 7 chr4 196926130 196926429 -5401918 + AluSq SINE Alu 2 300 -13 410 211 70 8 chr4 196926879 196927007 -5401340 - L1ME4a LINE L1 -1 6120 5985 1462 160 69 6 chr4 196928087 196928411 -5399936 + MER1A DNA MER1_type 35 539 0 307 331 32 45 chr4 196928916 196929070 -5399277 - MIR SINE MIR -55 207 56 1915 209 82 17 chr4 196929845 196930319 -5398028 + MLT1D LTR MaLR 1 505 0 2340 168 10 5 chr4 196930516 196930922 -5397425 + L1MC1 LINE L1 5426 5833 -500 699 311 130 49 chr4 196933685 196934406 -5393941 + L1MEc LINE L1 963 1687 -857 993 200 35 15 chr4 196934477 196934677 -5393670 + MER3 DNA MER1_type 2 205 -4 261 316 84 0 chr4 196934986 196935141 -5393206 + L1MEc LINE L1 2110 2277 -3869 2167 102 23 3 chr4 196935266 196935596 -5392751 + AluY SINE Alu 2 311 0 397 275 45 52 chr4 196935938 196936225 -5392122 + L1MEc LINE L1 3317 3601 -2545 404 336 64 34 chr4 196936498 196936796 -5391551 + L1MEc LINE L1 4062 4368 -1778 1455 246 109 35 chr4 196937182 196937712 -5390635 + MLT1F1 LTR MaLR 1 567 0 340 318 32 79 chr4 196938011 196938291 -5390056 + MLT1J LTR MaLR 111 377 -134 2283 93 3 0 chr4 196938455 196938757 -5389590 + AluSp SINE Alu 1 303 -10 578 241 0 8 chr4 196939238 196939371 -5388976 - LTR67 LTR ERVL -8 549 418 245 266 78 39 chr4 196940875 196941003 -5387344 + L2 LINE L2 3171 3303 -10 349 109 0 54 chr4 196941385 196941477 -5386870 + (TA)n Simple_repeat Simple_repeat 2 88 0 241 188 82 35 chr4 196941581 196941666 -5386681 + L1MC4 LINE L1 6614 6702 -1340 951 226 81 74 chr4 196942811 196943253 -5385094 - LTR29 LTR ERV1 0 608 180 262 193 108 48 chr4 196943253 196943336 -5385011 - LTR29 LTR ERV1 -398 224 137 * 297 247 25 0 chr4 196943334 196943415 -5384932 - MER34 LTR ERV1 -439 103 21 260 347 31 0 chr4 196943666 196943764 -5384583 + MIR SINE MIR 47 147 -61 3670 109 19 31 chr4 196943764 196944340 -5384007 + MER41B LTR ERV1 1 569 -66 1785 127 4 4 chr4 196944480 196944732 -5383615 - AluSq SINE Alu -61 252 1 7863 107 2 1 chr4 196944732 196945784 -5382563 - THE1B-int LTR MaLR -527 1053 1 2291 133 48 20 chr4 196945784 196946138 -5382209 - THE1B LTR MaLR 0 364 1 2305 203 13 7 chr4 196946142 196946595 -5381752 - L1MA10 LINE L1 -133 6201 5746 458 315 94 56 chr4 196946647 196947493 -5380854 - L1M4 LINE L1 -1019 5127 4241 4009 200 123 97 chr4 196949514 196949755 -5378592 + Charlie1a DNA MER1_type 1 234 -2527 212 86 29 0 chr4 196949755 196949790 -5378557 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 4009 200 123 97 chr4 196949790 196950586 -5377761 + Charlie1a DNA MER1_type 234 1090 -1671 2025 93 7 14 chr4 196950586 196950888 -5377459 + AluSc SINE Alu 1 300 0 4009 200 123 97 chr4 196950888 196951265 -5377082 + Charlie1a DNA MER1_type 1090 1455 0 585 277 48 48 chr4 196951766 196952138 -5376209 + LTR16A1 LTR ERVL 27 398 -59 889 191 129 21 chr4 196952436 196952630 -5375717 + MER20 DNA MER1_type 2 216 -3 2489 53 3 0 chr4 196953796 196954098 -5374249 - AluY SINE Alu -8 303 1 3157 177 17 2 chr4 196954467 196955042 -5373305 - L1MA10 LINE L1 -955 5191 4608 380 305 58 17 chr4 196955105 196955279 -5373068 - MER5A DNA MER1_type -2 187 7 283 302 48 8 chr4 196955349 196955475 -5372872 - MIR SINE MIR -12 250 120 264 224 45 30 chr4 196955477 196955544 -5372803 - MLT1G LTR MaLR -199 391 324 642 255 30 53 chr4 196956030 196956293 -5372054 - L1ME LINE L1 -392 5770 5514 1111 190 24 14 chr4 196958621 196958832 -5369515 + MER20 DNA MER1_type 7 219 0 2225 103 3 0 chr4 196958838 196959138 -5369209 + AluSp SINE Alu 1 301 -12 180 0 0 0 chr4 196959689 196959709 -5368638 + (TA)n Simple_repeat Simple_repeat 1 20 0 1957 14 0 0 chr4 196959710 196959921 -5368426 - L1PA5 LINE L1 -5 6149 5939 28 0 0 0 chr4 196960236 196960264 -5368083 + AT_rich Low_complexity Low_complexity 1 28 0 231 250 114 45 chr4 196961476 196961564 -5366783 + MIR SINE MIR 41 134 -128 6583 88 0 12 chr4 196967114 196967971 -5360376 - L1PA10 LINE L1 -6 6162 5296 210 37 0 0 chr4 196967971 196967998 -5360349 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2168 120 0 0 chr4 196967998 196968281 -5360066 - AluSg SINE Alu -27 283 1 6583 88 0 12 chr4 196968281 196968847 -5359500 - L1PA10 LINE L1 -870 5298 4749 7787 130 5 6 chr4 196968847 196970035 -5358312 + L1PA10 LINE L1 3554 4740 -1406 21 36 0 0 chr4 196972695 196972723 -5355624 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 196973168 196973197 -5355150 + AT_rich Low_complexity Low_complexity 1 29 0 3389 197 44 11 chr4 196973226 196974059 -5354288 - L1MB5 LINE L1 0 6164 5266 222 152 22 0 chr4 196974059 196974105 -5354242 + (TA)n Simple_repeat Simple_repeat 1 47 0 3119 217 20 4 chr4 196974112 196974816 -5353531 - L1MB5 LINE L1 -1904 4242 3528 1364 146 34 0 chr4 196975077 196975310 -5353037 + L1MA4 LINE L1 6060 6300 0 198 220 0 80 chr4 196976308 196976358 -5351989 + L2 LINE L2 3266 3311 -2 820 228 90 54 chr4 196977134 196977502 -5350845 + MER113 DNA MER1_type? 39 419 -102 22 0 0 0 chr4 196978178 196978200 -5350147 + AT_rich Low_complexity Low_complexity 1 22 0 278 86 0 0 chr4 196979748 196979783 -5348564 - MLT2B2 LTR ERVL -2 513 479 444 37 0 0 chr4 196979783 196979837 -5348510 + (GA)n Simple_repeat Simple_repeat 2 55 0 252 0 0 0 chr4 196979836 196979864 -5348483 + (TG)n Simple_repeat Simple_repeat 2 29 0 * 679 222 36 57 chr4 196980012 196980206 -5348141 + MLT1A2 LTR MaLR 173 362 -12 261 196 0 0 chr4 196980248 196980294 -5348053 - L2 LINE L2 0 3272 3227 5705 173 45 2 chr4 196980319 196982292 -5346055 + L1PA16 LINE L1 4114 6165 -1 226 232 189 43 chr4 196982295 196982459 -5345888 - L2 LINE L2 -77 3236 3049 506 255 42 46 chr4 196982876 196983115 -5345232 - HAL1 LINE L1 0 2507 2270 458 266 49 86 chr4 196983099 196983448 -5344899 - HAL1 LINE L1 -194 2313 1978 * 288 280 72 24 chr4 196983519 196983644 -5344703 - HAL1 LINE L1 -1752 755 625 24 0 0 0 chr4 196983661 196983685 -5344662 + AT_rich Low_complexity Low_complexity 1 24 0 2364 98 0 0 chr4 196984659 196984964 -5343383 - AluSx SINE Alu -7 305 1 28 29 0 0 chr4 196985839 196985874 -5342473 + AT_rich Low_complexity Low_complexity 1 35 0 2183 101 31 0 chr4 196986444 196986730 -5341617 + AluSx SINE Alu 1 295 -17 269 323 10 0 chr4 196986980 196987076 -5341271 - MER117 DNA MER1_type -84 113 17 579 278 12 6 chr4 196989400 196989562 -5338785 + LTR33 LTR ERVL 4 166 -355 260 338 32 13 chr4 196989600 196989757 -5338590 + LTR33 LTR ERVL 304 463 -58 1045 99 0 0 chr4 196990017 196990148 -5338199 + AluSc SINE Alu 1 131 -178 2046 126 0 32 chr4 196990159 196990468 -5337879 + AluSc SINE Alu 1 299 -10 191 336 87 19 chr4 196991812 196991891 -5336456 + L2 LINE L2 3156 3245 -27 2656 141 52 0 chr4 196991891 196992295 -5336052 - MSTB LTR MaLR -1 425 1 191 336 87 19 chr4 196992295 196992319 -5336028 + L2 LINE L2 3245 3266 -6 330 132 0 0 chr4 196992530 196992583 -5335764 + (TG)n Simple_repeat Simple_repeat 2 54 0 2617 33 0 7 chr4 196995560 196995863 -5332484 + AluY SINE Alu 1 301 -10 212 240 0 20 chr4 196995987 196996037 -5332310 + GA-rich Low_complexity Low_complexity 4 52 0 21 0 0 0 chr4 196996148 196996169 -5332178 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 196996277 196996304 -5332043 + AT_rich Low_complexity Low_complexity 1 27 0 8041 36 16 4 chr4 196996321 196997894 -5330453 - L1PA5 LINE L1 -2 6152 4571 2509 124 5 24 chr4 196998298 196998669 -5329678 + THE1B LTR MaLR 1 364 0 12594 88 10 1 chr4 196998669 197000230 -5328117 + THE1B-int LTR MaLR 1 1576 -4 2514 109 36 20 chr4 197000234 197000592 -5327755 + THE1B LTR MaLR 1 364 0 315 174 37 28 chr4 197000602 197000711 -5327636 + (TTATA)n Simple_repeat Simple_repeat 5 114 0 395 325 133 34 chr4 197000833 197001215 -5327132 + LTR67 LTR ERVL 131 550 -7 2182 105 3 20 chr4 197001406 197001710 -5326637 + AluSx SINE Alu 1 299 -13 304 136 15 61 chr4 197001895 197001961 -5326386 - Alu SINE Alu 0 302 240 661 252 95 9 chr4 197051967 197052189 -5276158 + L1MC4 LINE L1 6767 7007 -1035 1545 248 92 18 chr4 197052234 197052899 -5275448 + L1MC4 LINE L1 7148 7861 -181 322 367 17 8 chr4 197052944 197053064 -5275283 + MIR3 SINE MIR 15 135 -73 870 190 5 62 chr4 197053359 197053504 -5274843 + Tigger2 DNA MER2_type 2506 2639 -69 2256 114 0 0 chr4 197053504 197053802 -5274545 - AluSx SINE Alu -14 298 1 870 190 5 62 chr4 197053802 197053851 -5274496 + Tigger2 DNA MER2_type 2639 2689 -19 21 0 0 0 chr4 197054110 197054131 -5274216 + AT_rich Low_complexity Low_complexity 1 21 0 366 23 0 0 chr4 197054389 197054432 -5273915 + (CA)n Simple_repeat Simple_repeat 2 44 0 3037 39 17 7 chr4 197056414 197056824 -5271523 - L1P2 LINE L1 -487 5667 5254 234 114 0 0 chr4 197056838 197056873 -5271474 + L1P LINE L1 4503 4537 -1609 827 147 0 7 chr4 197058021 197058171 -5270176 + (TTCC)n Simple_repeat Simple_repeat 4 152 0 1365 116 5 0 chr4 197058273 197058462 -5269885 + AluSp SINE Alu 121 310 -3 616 340 95 21 chr4 197058654 197059325 -5269022 - L2 LINE L2 -976 2338 1618 1241 259 40 6 chr4 197059690 197060041 -5268306 - MLT1A1 LTR MaLR -2 363 1 230 333 62 0 chr4 197060207 197060288 -5268059 + L2 LINE L2 3150 3235 -37 240 299 51 26 chr4 197062227 197062344 -5266003 - MLT1K LTR MaLR -357 231 112 322 330 9 9 chr4 197062677 197062783 -5265564 - L2 LINE L2 -2 3311 3206 211 163 25 38 chr4 197062832 197062912 -5265435 + (TAA)n Simple_repeat Simple_repeat 3 81 0 579 307 83 76 chr4 197063007 197063427 -5264920 - L2 LINE L2 -433 2881 2459 1332 124 17 37 chr4 197063532 197063773 -5264574 - Tigger2a DNA MER2_type -198 236 1 2400 165 2 38 chr4 197064972 197065421 -5262926 + Tigger2a DNA MER2_type 1 433 -1 744 93 42 0 chr4 197066749 197066867 -5261480 - L1MA9 LINE L1 0 6312 6190 1779 197 33 0 chr4 197066932 197067322 -5261025 - MER57A LTR ERV1 0 403 1 180 306 71 41 chr4 197067635 197067733 -5260614 - MIR SINE MIR -103 159 59 451 198 0 17 chr4 197068542 197068658 -5259689 + CT-rich Low_complexity Low_complexity 3 116 0 180 0 0 0 chr4 197069688 197069708 -5258639 + (TG)n Simple_repeat Simple_repeat 1 20 0 2190 115 0 0 chr4 197069761 197070065 -5258282 + AluSg SINE Alu 1 304 -6 606 187 107 27 chr4 197071895 197072045 -5256302 + MER45A DNA AcHobo 17 178 0 183 327 0 0 chr4 197072124 197072176 -5256171 + L2 LINE L2 3179 3230 -83 1885 168 58 0 chr4 197072300 197072645 -5255702 + MLT1A1 LTR MaLR 1 365 0 383 257 155 32 chr4 197072669 197072856 -5255491 - MIR SINE MIR -18 244 35 3090 42 98 0 chr4 197072952 197073352 -5254995 - L1PA5 LINE L1 -8 6146 5708 7107 198 44 36 chr4 197073452 197074504 -5253843 + L1ME2 LINE L1 3758 4800 -1364 4506 140 22 3 chr4 197074504 197075263 -5253084 + L1MA5 LINE L1 5523 6296 -4 7107 198 44 36 chr4 197075263 197076567 -5251780 + L1ME2 LINE L1 4800 6130 -34 2568 68 0 3 chr4 197076971 197077281 -5251066 - AluY SINE Alu -2 309 1 252 153 28 14 chr4 197078911 197078983 -5249364 + GA-rich Low_complexity Low_complexity 3 75 0 338 304 0 54 chr4 197079624 197079772 -5248575 - MIR SINE MIR -115 147 8 21 0 0 0 chr4 197080272 197080293 -5248054 + AT_rich Low_complexity Low_complexity 1 21 0 1443 61 14 70 chr4 197080733 197080947 -5247400 + AluSg/x SINE Alu 96 297 -13 462 251 150 29 chr4 197081199 197081406 -5246941 - MIR SINE MIR -10 252 21 369 269 26 77 chr4 197083551 197083707 -5244640 - L1ME3A LINE L1 -208 5962 5815 384 276 20 13 chr4 197083726 197083878 -5244469 - L1ME3A LINE L1 -431 5739 5587 2535 87 26 0 chr4 197084126 197084472 -5243875 - THE1A LTR MaLR 0 355 1 183 241 0 37 chr4 197084939 197084993 -5243354 - L2 LINE L2 0 3313 3262 2093 118 14 10 chr4 197086849 197087146 -5241201 - AluSx SINE Alu -14 298 1 22 0 0 0 chr4 197087396 197087418 -5240929 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr4 197087517 197087550 -5240797 + AT_rich Low_complexity Low_complexity 1 33 0 1273 218 75 11 chr4 197087575 197087855 -5240492 + AluJo SINE Alu 2 299 -13 21 0 0 0 chr4 197089278 197089299 -5239048 + AT_rich Low_complexity Low_complexity 1 21 0 197 379 0 0 chr4 197090282 197090340 -5238007 + L2 LINE L2 3221 3278 -35 1464 182 57 24 chr4 197090521 197091034 -5237313 - L1MB1 LINE L1 -502 5666 5115 2367 178 55 8 chr4 197091034 197091524 -5236823 + L1MB1 LINE L1 5655 6167 -1 2164 125 0 0 chr4 197091530 197091825 -5236522 - AluY SINE Alu -16 295 1 443 308 192 23 chr4 197091985 197092371 -5235976 - L2 LINE L2 0 3313 2863 384 273 6 42 chr4 197092763 197092928 -5235419 + L1ME3A LINE L1 5387 5545 -619 402 229 17 42 chr4 197093010 197093128 -5235219 - MER63 DNA MER1_type -313 749 9 709 227 85 78 chr4 197093186 197093573 -5234774 + L1ME3A LINE L1 5772 6161 -9 254 299 52 21 chr4 197093880 197093977 -5234370 - MER5A DNA MER1_type -3 186 87 265 107 18 18 chr4 197094093 197094149 -5234198 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 21 36 0 0 chr4 197094321 197094349 -5233998 + AT_rich Low_complexity Low_complexity 1 28 0 33 25 0 0 chr4 197094702 197094742 -5233605 + AT_rich Low_complexity Low_complexity 1 40 0 35 0 0 0 chr4 197095103 197095138 -5233209 + AT_rich Low_complexity Low_complexity 1 35 0 2241 90 3 3 chr4 197096320 197096620 -5231727 - AluSx SINE Alu -12 300 1 23 68 0 0 chr4 197097193 197097237 -5231110 + AT_rich Low_complexity Low_complexity 1 44 0 28 48 0 0 chr4 197097643 197097685 -5230662 + AT_rich Low_complexity Low_complexity 1 42 0 2635 311 119 45 chr4 197097778 197099589 -5228758 - L2 LINE L2 -433 2881 937 2729 167 21 4 chr4 197099704 197100225 -5228122 + L1MA4 LINE L1 5703 6232 -68 25 51 0 0 chr4 197100260 197100299 -5228048 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr4 197100643 197100664 -5227683 + AT_rich Low_complexity Low_complexity 1 21 0 566 304 5 10 chr4 197100664 197100858 -5227489 + MER58B DNA MER1_type 149 341 0 576 348 98 26 chr4 197100899 197101168 -5227179 + L2 LINE L2 2825 3136 -136 186 103 0 0 chr4 197101168 197101197 -5227150 + (CTTG)n Simple_repeat Simple_repeat 3 31 0 576 348 98 26 chr4 197101197 197101344 -5227003 + L2 LINE L2 3136 3271 -1 567 279 30 18 chr4 197102409 197102574 -5225773 + MIR SINE MIR 75 241 -21 592 306 87 9 chr4 197102978 197103197 -5225150 + MIR SINE MIR 21 256 -6 288 308 144 0 chr4 197103421 197103525 -5224822 + MIR3 SINE MIR 81 199 -9 889 131 36 0 chr4 197104453 197104621 -5223726 + L1MA9 LINE L1 6020 6193 -119 547 131 0 0 chr4 197105208 197105292 -5223055 + Tigger1 DNA MER2_type 1998 2081 -337 180 0 0 0 chr4 197105642 197105662 -5222685 + (TTG)n Simple_repeat Simple_repeat 2 21 0 514 256 85 82 chr4 197106258 197106539 -5221808 + HAL1 LINE L1 920 1201 -1306 318 255 0 51 chr4 197106552 197106573 -5221774 + HAL1 LINE L1 1271 1292 -1215 778 173 8 0 chr4 197106573 197106700 -5221647 + FLAM_A SINE Alu 1 128 -5 318 255 0 51 chr4 197106700 197106776 -5221571 + HAL1 LINE L1 1292 1363 -1144 340 321 15 0 chr4 197107228 197107359 -5220988 + MER117 DNA MER1_type 4 136 -61 1974 125 108 21 chr4 197107375 197107710 -5220637 - THE1B LTR MaLR 0 364 1 207 0 0 0 chr4 197107927 197107950 -5220397 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 311 308 39 10 chr4 197107960 197108064 -5220283 - L2 LINE L2 -36 3277 3171 260 324 110 7 chr4 197108853 197108989 -5219358 + L2 LINE L2 1016 1165 -2149 227 215 0 46 chr4 197109145 197109210 -5219137 - MER63 DNA MER1_type -115 721 34 429 235 4 13 chr4 197109758 197109886 -5218461 + MIR SINE MIR 40 161 -58 1146 239 8 0 chr4 197109911 197110166 -5218181 + MLT1A1 LTR MaLR 109 365 0 2366 82 0 0 chr4 197110181 197110474 -5217873 - AluSc SINE Alu -16 293 1 320 368 63 40 chr4 197110759 197111058 -5217289 + L2 LINE L2 2966 3271 -1 207 338 68 8 chr4 197111103 197111236 -5217111 - L2 LINE L2 0 3313 3173 237 227 45 23 chr4 197111609 197111697 -5216650 + MLT1L LTR MaLR 425 514 -101 2338 158 26 12 chr4 197113038 197113461 -5214886 + MSTB1 LTR MaLR 4 432 0 318 295 171 58 chr4 197114437 197114993 -5213354 + L2 LINE L2 1560 2178 -1136 533 296 25 31 chr4 197115090 197115286 -5213061 + L2 LINE L2 3118 3312 -1 201 204 45 0 chr4 197115513 197115557 -5212790 + L2 LINE L2 3197 3242 -71 22 35 0 0 chr4 197115667 197115696 -5212651 + AT_rich Low_complexity Low_complexity 1 29 0 456 298 17 22 chr4 197115790 197115971 -5212376 + MIR SINE MIR 13 192 -70 1473 273 81 23 chr4 197116025 197116553 -5211794 + MLT1E LTR MaLR 17 575 -18 687 290 110 23 chr4 197117151 197117578 -5210769 - L1ME LINE L1 -336 5785 5322 579 293 65 35 chr4 197117778 197118010 -5210337 - MIR SINE MIR -8 254 16 308 194 21 43 chr4 197118193 197118286 -5210061 - L1ME4a LINE L1 -1 6120 6030 31 26 0 0 chr4 197119048 197119086 -5209261 + AT_rich Low_complexity Low_complexity 1 38 0 227 258 42 78 chr4 197121334 197121501 -5206846 - MLT1L LTR MaLR -235 380 220 1165 204 124 67 chr4 197123326 197123802 -5204545 - MLT1D LTR MaLR -2 503 1 319 346 136 6 chr4 197125154 197125316 -5203031 - MIR SINE MIR -78 184 2 2337 48 17 0 chr4 197125432 197125725 -5202622 - L1PA4 LINE L1 -1 6154 5857 193 365 106 0 chr4 197125786 197125871 -5202476 + MIR3 SINE MIR 101 194 -14 265 301 0 43 chr4 197126470 197126563 -5201784 - L2 LINE L2 -13 3300 3212 421 333 0 19 chr4 197126733 197126892 -5201455 + L2 LINE L2 3158 3313 0 184 243 0 0 chr4 197127018 197127055 -5201292 + MIR SINE MIR 111 147 -61 1838 241 11 42 chr4 197127070 197127621 -5200726 - MLT1F LTR MaLR -5 537 4 207 0 0 0 chr4 197127818 197127841 -5200506 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 407 269 97 0 chr4 197129349 197129483 -5198864 + MIR SINE MIR 80 226 -36 1831 118 4 8 chr4 197130159 197130421 -5197926 + AluSx SINE Alu 6 266 -46 21 36 0 0 chr4 197131437 197131465 -5196882 + AT_rich Low_complexity Low_complexity 1 28 0 2172 93 0 7 chr4 197131924 197132215 -5196132 + AluSx SINE Alu 1 289 -23 21 0 0 0 chr4 197132804 197132825 -5195522 + AT_rich Low_complexity Low_complexity 1 21 0 701 235 38 5 chr4 197133118 197133331 -5195016 - L1MD2 LINE L1 -1 6358 6139 1666 262 136 13 chr4 197133336 197133623 -5194724 - L1MC4 LINE L1 0 8042 7792 1731 158 70 14 chr4 197133623 197133978 -5194369 + THE1C LTR MaLR 1 375 0 1666 262 136 13 chr4 197133978 197134934 -5193413 - L1MC4 LINE L1 -250 7792 6512 220 375 0 0 chr4 197135205 197135230 -5193117 + GA-rich Low_complexity Low_complexity 3 27 -71 2275 107 3 0 chr4 197135230 197135539 -5192808 + AluSg SINE Alu 1 310 0 220 375 0 0 chr4 197135539 197135609 -5192738 + GA-rich Low_complexity Low_complexity 26 98 0 2097 130 3 7 chr4 197136875 197137175 -5191172 + AluSx SINE Alu 1 299 -13 1822 155 4 4 chr4 197139312 197139590 -5188757 - AluJo SINE Alu -23 289 12 251 279 41 68 chr4 197139631 197139778 -5188569 - L3 LINE CR1 -103 1474 1332 871 185 0 25 chr4 197139874 197140036 -5188311 + MLT1A2 LTR MaLR 1 158 -216 444 267 64 56 chr4 197140117 197140368 -5187979 + MLT1A2 LTR MaLR 112 364 -1 2115 119 0 0 chr4 197141341 197141627 -5186720 + AluY SINE Alu 3 288 -23 188 178 0 22 chr4 197141628 197141673 -5186674 + GA-rich Low_complexity Low_complexity 4 47 0 1864 130 60 0 chr4 197142172 197142456 -5185891 + AluSx SINE Alu 1 301 -11 241 227 55 78 chr4 197142582 197142710 -5185637 - L2 LINE L2 -8 3264 3140 1527 211 3 22 chr4 197142782 197143099 -5185248 + AluJo SINE Alu 2 312 0 259 62 0 42 chr4 197143110 197143158 -5185189 + (GGAAA)n Simple_repeat Simple_repeat 5 50 0 430 328 66 23 chr4 197143455 197143803 -5184544 - L1ME LINE L1 -507 5655 5293 2391 258 12 8 chr4 197143874 197144389 -5183958 + LTR40a LTR ERVL 3 519 0 487 258 44 6 chr4 197144482 197144664 -5183683 - L1ME LINE L1 -1077 5069 4881 431 202 24 0 chr4 197144664 197144748 -5183599 - FLAM_A SINE Alu -18 124 39 253 253 0 24 chr4 197144820 197144903 -5183444 - L1ME LINE L1 -1333 4813 4733 327 317 78 19 chr4 197145196 197145401 -5182946 - L1ME LINE L1 -1759 4387 4171 772 235 57 39 chr4 197145456 197145686 -5182661 + L2 LINE L2 3048 3281 -32 3752 85 14 2 chr4 197145688 197146182 -5182165 - LTR3b LTR ERVK 0 500 1 183 222 0 0 chr4 197146182 197146218 -5182129 + L2 LINE L2 3278 3313 0 871 264 28 20 chr4 197146418 197146672 -5181675 + MIR SINE MIR 2 257 -5 227 307 58 49 chr4 197146675 197147001 -5181346 - L1ME LINE L1 -2237 3909 3581 202 200 40 0 chr4 197147351 197147401 -5180946 + (TA)n Simple_repeat Simple_repeat 1 52 0 228 182 0 0 chr4 197147976 197148020 -5180327 + (TA)n Simple_repeat Simple_repeat 2 45 0 1390 200 14 32 chr4 197148034 197148319 -5180028 - AluJo SINE Alu -30 282 3 1804 253 84 21 chr4 197148694 197149252 -5179095 + MLT1E LTR MaLR 1 593 0 23 54 0 0 chr4 197149594 197149631 -5178716 + AT_rich Low_complexity Low_complexity 1 37 0 2732 159 31 13 chr4 197150614 197151067 -5177280 - LOR1b LTR ERV1 0 461 1 274 276 53 13 chr4 197151092 197151168 -5177179 + L2 LINE L2 3233 3311 -2 24 85 0 0 chr4 197152560 197152619 -5175728 + AT_rich Low_complexity Low_complexity 1 59 0 579 252 110 0 chr4 197152955 197153110 -5175237 - L1MC4 LINE L1 -1387 6655 6484 1687 157 0 44 chr4 197155568 197155861 -5172486 + AluJo SINE Alu 1 280 -32 851 160 0 0 chr4 197155876 197156001 -5172346 + L1PB4 LINE L1 6020 6144 -12 809 179 0 17 chr4 197156006 197156235 -5172112 + GA-rich Low_complexity Low_complexity 1 225 0 750 259 129 11 chr4 197157871 197158157 -5170190 + MLT1H LTR MaLR 230 549 0 2493 197 22 91 chr4 197158290 197158954 -5169393 + L1M4 LINE L1 4695 5403 -781 324 163 10 71 chr4 197158954 197159052 -5169295 + L1MA4A LINE L1 6212 6303 0 2493 197 22 91 chr4 197159052 197159146 -5169201 + L1M4 LINE L1 5403 5502 -682 2100 143 3 0 chr4 197159146 197159453 -5168894 + AluSx SINE Alu 3 310 -2 2493 197 22 91 chr4 197159453 197159555 -5168792 + L1M4 LINE L1 5502 5471 -713 2296 119 0 0 chr4 197159555 197159866 -5168481 + AluSx SINE Alu 1 311 -1 2493 197 22 91 chr4 197159866 197160019 -5168328 + L1M4 LINE L1 5470 5632 -552 649 203 85 26 chr4 197160172 197160325 -5168022 - L1MC4 LINE L1 -468 7574 7413 417 236 0 36 chr4 197160497 197160607 -5167740 - L1ME LINE L1 -297 5824 5719 429 218 24 0 chr4 197160991 197161115 -5167232 + GA-rich Low_complexity Low_complexity 2 128 0 1337 198 22 32 chr4 197161127 197161228 -5167119 + AluJb SINE Alu 18 119 -193 2193 104 0 10 chr4 197161228 197161527 -5166820 - AluSx SINE Alu -16 296 1 1337 198 22 32 chr4 197161527 197161703 -5166644 + AluJb SINE Alu 119 292 -20 547 222 133 36 chr4 197165401 197165569 -5162778 + MIR SINE MIR 16 213 -49 1539 222 77 8 chr4 197165569 197165934 -5162413 - MLT1B LTR MaLR 0 390 1 547 222 133 36 chr4 197165934 197165990 -5162357 + MIR SINE MIR 213 262 0 693 250 14 65 chr4 197166261 197166477 -5161870 + MER58C DNA MER1_type 11 215 0 2151 80 13 20 chr4 197166912 197167213 -5161134 - AluY SINE Alu -12 299 1 245 359 49 14 chr4 197167220 197167362 -5160985 - MIR SINE MIR -20 242 96 205 375 11 0 chr4 197167739 197167827 -5160520 + (CATATA)n Simple_repeat Simple_repeat 6 94 0 1660 201 7 3 chr4 197168649 197168957 -5159390 + AluJb SINE Alu 1 309 -3 1115 246 11 4 chr4 197171570 197171851 -5156496 - L1MA4 LINE L1 -6 6294 6012 557 282 101 5 chr4 197172733 197172942 -5155405 + MIR SINE MIR 26 254 -8 748 231 0 12 chr4 197173324 197173497 -5154850 - MER5B DNA MER1_type -2 176 6 333 204 99 116 chr4 197175310 197175491 -5152856 + MER5B DNA MER1_type 1 178 0 226 217 0 158 chr4 197175981 197176101 -5152246 + MER5B DNA MER1_type 1 101 -77 233 264 109 36 chr4 197176739 197176849 -5151498 - MIR3 SINE MIR -54 154 37 437 319 76 13 chr4 197178352 197178509 -5149838 - MIR3 SINE MIR -7 201 35 490 165 87 0 chr4 197179492 197179595 -5148752 + L1MA9 LINE L1 6201 6312 0 210 37 0 0 chr4 197180790 197180817 -5147530 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 282 29 0 0 chr4 197181510 197181545 -5146802 + (TG)n Simple_repeat Simple_repeat 1 35 0 900 169 81 0 chr4 197181741 197181901 -5146446 + Tigger4(Zombi) DNA MER2_type 1 173 -2558 3075 145 42 2 chr4 197181918 197182442 -5145905 + Tigger4(Zombi) DNA MER2_type 2187 2731 0 345 274 21 0 chr4 197182516 197182611 -5145736 + MIR SINE MIR 67 163 -99 21 57 0 0 chr4 197185049 197185084 -5143263 + AT_rich Low_complexity Low_complexity 1 35 0 1068 243 91 35 chr4 197185670 197186011 -5142336 - MLT1E LTR MaLR -1 592 233 1721 215 10 10 chr4 197186129 197186519 -5141828 - L1PA16 LINE L1 -15 6151 5762 3490 112 15 9 chr4 197186526 197187055 -5141292 + L1PA11 LINE L1 5643 6174 0 2315 181 10 4 chr4 197187068 197187559 -5140788 - L1 LINE L1 -1812 4334 3841 456 259 9 9 chr4 197187562 197187678 -5140669 - MLT1E LTR MaLR -472 121 6 195 343 0 0 chr4 197188012 197188079 -5140268 - L2 LINE L2 -2 3311 3245 236 273 20 10 chr4 197188870 197188969 -5139378 + MER103 DNA DNA 12 111 -55 440 318 76 29 chr4 197188996 197189446 -5138901 - L1 LINE L1 -2286 3860 3390 301 278 4 11 chr4 197192909 197193003 -5135344 - MIR SINE MIR -44 164 69 868 115 8 0 chr4 197193011 197193133 -5135214 - AluSq/x SINE Alu -189 123 1 536 202 17 25 chr4 197193143 197193262 -5135085 - MER5A DNA MER1_type -56 133 16 23 33 0 0 chr4 197193360 197193390 -5134957 + AT_rich Low_complexity Low_complexity 1 30 0 367 312 108 52 chr4 197194172 197194515 -5133832 + HAL1 LINE L1 258 619 -1888 2279 95 7 0 chr4 197194748 197195044 -5133303 + AluSx SINE Alu 3 300 -12 327 259 25 75 chr4 197195257 197195496 -5132851 + HAL1 LINE L1 2281 2507 0 28 0 0 0 chr4 197195496 197195524 -5132823 + AT_rich Low_complexity Low_complexity 1 28 0 493 321 118 17 chr4 197195810 197196035 -5132312 + MIR SINE MIR 3 239 -23 23 54 0 0 chr4 197200481 197200518 -5127829 + AT_rich Low_complexity Low_complexity 1 37 0 3042 104 7 0 chr4 197200665 197201107 -5127240 - L1PB2 LINE L1 -2 6149 5705 315 242 0 15 chr4 197201461 197201527 -5126820 + L2 LINE L2 3249 3313 0 1598 201 0 0 chr4 197202173 197202461 -5125886 - AluJo SINE Alu -24 288 1 410 278 40 8 chr4 197203122 197203248 -5125099 + L2 LINE L2 3183 3312 -1 254 111 61 50 chr4 197204604 197204703 -5123644 + (TTATA)n Simple_repeat Simple_repeat 1 100 0 283 333 0 11 chr4 197204825 197204915 -5123432 + MIR3 SINE MIR 82 170 -38 2175 90 3 10 chr4 197206515 197206803 -5121544 + AluSq SINE Alu 1 286 -27 207 0 0 0 chr4 197206803 197206826 -5121521 + (CA)n Simple_repeat Simple_repeat 2 24 0 296 295 105 11 chr4 197208150 197208245 -5120102 + MIR3 SINE MIR 7 110 -98 295 271 45 90 chr4 197209170 197209325 -5119022 + MIR3 SINE MIR 4 151 -57 1558 138 60 21 chr4 197209325 197209608 -5118739 + AluJb SINE Alu 1 294 -18 206 211 58 0 chr4 197210012 197210064 -5118283 + L2 LINE L2 3259 3313 0 29 28 0 0 chr4 197210137 197210173 -5118174 + AT_rich Low_complexity Low_complexity 1 36 0 191 307 109 20 chr4 197211247 197211348 -5116999 - MIR SINE MIR -74 188 79 23 33 0 0 chr4 197211930 197211960 -5116387 + AT_rich Low_complexity Low_complexity 1 30 0 582 193 0 9 chr4 197212299 197212408 -5115939 - FLAM_A SINE Alu -22 120 13 833 151 188 0 chr4 197212623 197212815 -5115532 + Tigger7 DNA MER2_type 2256 2483 -8 1115 216 81 98 chr4 197213058 197213567 -5114780 + MLT1D LTR MaLR 1 500 -5 2389 99 0 0 chr4 197214157 197214461 -5113886 + AluSg SINE Alu 5 308 -2 206 279 73 15 chr4 197214874 197214942 -5113405 - L2 LINE L2 -172 3100 3029 1017 244 5 0 chr4 197215383 197215604 -5112743 + MIR SINE MIR 20 241 -21 21 89 0 0 chr4 197216418 197216474 -5111873 + AT_rich Low_complexity Low_complexity 1 56 0 313 318 58 63 chr4 197216497 197216686 -5111661 + HAL1 LINE L1 2238 2425 -82 1085 249 32 10 chr4 197216869 197217178 -5111169 - MER58B DNA MER1_type -16 325 10 1061 157 14 23 chr4 197217547 197217763 -5110584 + MLT2D LTR ERVL 1 214 -200 305 231 48 39 chr4 197217790 197217894 -5110453 + MLT2D LTR ERVL 198 302 -112 693 103 53 4 chr4 197217938 197218189 -5110158 + (TA)n Simple_repeat Simple_repeat 1 263 0 234 0 0 0 chr4 197218506 197218532 -5109815 + (TA)n Simple_repeat Simple_repeat 2 27 0 1961 119 15 0 chr4 197218532 197218800 -5109547 - AluSx SINE Alu -28 284 13 21 0 0 0 chr4 197218800 197218821 -5109526 + AT_rich Low_complexity Low_complexity 1 21 0 392 356 47 17 chr4 197219763 197219999 -5108348 - MIR SINE MIR -12 250 8 4324 163 36 25 chr4 197220927 197221952 -5106395 - L1MB3 LINE L1 -2 6181 5140 807 243 6 0 chr4 197221979 197222148 -5106199 + MER82 DNA MER2_type 474 643 -10 200 200 25 0 chr4 197222154 197222194 -5106153 + (CA)n Simple_repeat Simple_repeat 2 42 0 319 191 0 0 chr4 197223170 197223233 -5105114 + L1PA8 LINE L1 6097 6159 -13 207 293 111 0 chr4 197223382 197223481 -5104866 + MIR SINE MIR 83 192 -70 22 35 0 0 chr4 197224237 197224266 -5104081 + AT_rich Low_complexity Low_complexity 1 29 0 1790 195 51 20 chr4 197224347 197224798 -5103549 + MLT1C LTR MaLR 3 467 0 297 307 92 33 chr4 197224881 197225034 -5103313 - MIR3 SINE MIR -41 167 6 830 265 0 0 chr4 197226459 197226659 -5101688 - MER3 DNA MER1_type -9 200 1 22 35 0 0 chr4 197227134 197227163 -5101184 + AT_rich Low_complexity Low_complexity 1 29 0 577 63 0 0 chr4 197228177 197228256 -5100091 + L1PA7 LINE L1 5901 5979 -175 2171 209 61 39 chr4 197278911 197279505 -5048842 - L1MB7 LINE L1 -89 6095 5489 205 258 30 0 chr4 197280034 197280100 -5048247 + (TCTCTG)n Simple_repeat Simple_repeat 1 68 0 375 219 113 62 chr4 197280132 197280292 -5048055 - MLT1D LTR MaLR -299 168 1 515 233 57 51 chr4 197281940 197282116 -5046231 + MLT1B LTR MaLR 1 177 -197 852 176 0 0 chr4 197282192 197282340 -5046007 - Tigger1 DNA MER2_type 0 2418 2271 853 233 25 0 chr4 197282379 197282581 -5045766 + MLT1B LTR MaLR 184 390 0 599 301 37 32 chr4 197283727 197283943 -5044404 - MIR SINE MIR -33 229 13 12666 138 14 78 chr4 197284600 197285911 -5042436 - Tigger1 DNA MER2_type 0 2418 1212 929 148 0 0 chr4 197285911 197286046 -5042301 + FLAM_C SINE Alu 1 135 -8 12666 138 14 78 chr4 197286046 197287185 -5041162 - Tigger1 DNA MER2_type -1206 1212 1 2297 88 0 7 chr4 197288394 197288689 -5039658 - AluSg SINE Alu -13 297 5 1907 199 17 10 chr4 197288909 197289336 -5039011 - L1MB7 LINE L1 -785 5361 4962 3584 148 42 18 chr4 197289370 197290033 -5038314 + L1MA8 LINE L1 5352 6030 -261 2243 82 4 0 chr4 197290288 197290567 -5037780 + AluSp SINE Alu 1 280 -33 233 163 20 0 chr4 197290572 197290621 -5037726 + GA-rich Low_complexity Low_complexity 2 51 0 253 169 119 0 chr4 197291721 197291780 -5036567 + L1MC4 LINE L1 6653 6718 -1324 1805 102 0 0 chr4 197292377 197292613 -5035734 - AluSq SINE Alu -77 236 1 411 329 14 0 chr4 197292614 197292757 -5035590 - MIR SINE MIR -1 261 117 13565 215 20 7 chr4 197292805 197296807 -5031540 + L1PA13 LINE L1 1105 5167 -1630 21 0 0 0 chr4 197296929 197296950 -5031397 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 197297562 197297585 -5030762 + AT_rich Low_complexity Low_complexity 1 23 0 260 279 0 0 chr4 197299337 197299398 -5028949 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 1959 128 11 3 chr4 197299738 197300096 -5028251 + AluSc SINE Alu 4 363 0 2106 132 30 30 chr4 197301499 197301863 -5026484 - THE1B LTR MaLR 0 364 1 4211 105 10 11 chr4 197303771 197304390 -5023957 + L1PA13 LINE L1 5546 6163 0 700 318 95 22 chr4 197306387 197306746 -5021601 - L2 LINE L2 0 3313 2929 2372 44 40 0 chr4 197307253 197307549 -5020798 + AluY SINE Alu 1 308 -3 265 235 25 0 chr4 197307645 197307726 -5020621 + (TA)n Simple_repeat Simple_repeat 1 83 0 243 0 0 0 chr4 197308792 197308819 -5019528 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2108 102 3 3 chr4 197308822 197309105 -5019242 - AluSq SINE Alu -30 283 1 380 281 144 14 chr4 197310734 197310880 -5017467 + MIR SINE MIR 91 255 -7 869 143 0 14 chr4 197311328 197311468 -5016879 + FLAM_C SINE Alu 1 138 -5 441 249 124 19 chr4 197311539 197311796 -5016551 + L1M4 LINE L1 4408 4691 -1455 31 104 0 0 chr4 197311811 197311926 -5016421 + AT_rich Low_complexity Low_complexity 1 115 0 2071 276 108 23 chr4 197311932 197312808 -5015539 - L1ME3 LINE L1 -57 6105 5305 1876 160 10 3 chr4 197312808 197313115 -5015232 - AluSx SINE Alu -3 309 1 2071 276 108 23 chr4 197313115 197314162 -5014185 - L1ME3 LINE L1 -857 5305 4012 641 146 0 0 chr4 197314170 197314266 -5014081 - AluJ/FLAM SINE Alu -216 96 1 761 240 6 6 chr4 197314266 197314437 -5013910 + MER58B DNA MER1_type 171 341 0 335 314 98 63 chr4 197314437 197314714 -5013633 + L1ME2 LINE L1 5658 5946 -218 461 287 66 0 chr4 197314885 197315021 -5013326 + MIR SINE MIR 2 146 -116 1847 273 39 33 chr4 197315395 197316121 -5012226 - L1ME3A LINE L1 -9 6972 6243 1127 254 54 31 chr4 197316166 197316681 -5011666 - L1ME3A LINE L1 -924 6033 5507 612 275 130 35 chr4 197317214 197317730 -5010617 - L1MEc LINE L1 -4636 2362 1757 533 232 5 113 chr4 197317756 197317950 -5010397 - L1ME LINE L1 -556 5606 5434 438 263 67 47 chr4 197318338 197318534 -5009813 - L1MEc LINE L1 -5202 1745 1538 2261 171 29 7 chr4 197318534 197318950 -5009397 + MSTB LTR MaLR 1 425 -1 438 263 67 47 chr4 197318950 197319095 -5009252 - L1MEc LINE L1 -5409 1538 1397 447 319 81 25 chr4 197319438 197319758 -5008589 - L1MEc LINE L1 -6014 1124 787 23 54 0 0 chr4 197319839 197319876 -5008471 + AT_rich Low_complexity Low_complexity 1 37 0 229 220 0 0 chr4 197320018 197320068 -5008279 + L1PA16 LINE L1 6108 6157 -9 231 291 101 13 chr4 197320115 197320194 -5008153 - L1MEc LINE L1 -6771 88 3 2105 127 10 0 chr4 197320214 197320521 -5007826 - AluSq SINE Alu -3 310 1 2090 139 0 7 chr4 197320748 197321057 -5007290 - AluSx SINE Alu -5 307 1 405 242 159 107 chr4 197321058 197321537 -5006810 + MLT1H LTR MaLR 23 526 -23 30 59 0 0 chr4 197321637 197321688 -5006659 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr4 197321717 197321738 -5006609 + AT_rich Low_complexity Low_complexity 1 21 0 33 90 0 0 chr4 197321812 197321901 -5006446 + AT_rich Low_complexity Low_complexity 1 89 0 316 356 22 22 chr4 197321954 197322089 -5006258 - HAL1b LINE L1 -580 768 634 348 248 132 76 chr4 197322098 197322574 -5005773 - HAL1b LINE L1 -773 575 73 1119 248 23 90 chr4 197322950 197323430 -5004917 + L1MCb LINE L1 148 595 -5450 897 238 63 8 chr4 197323503 197323885 -5004462 - L1MCb LINE L1 -2875 3689 3287 3320 256 43 39 chr4 197323900 197325521 -5002826 - L1MCb LINE L1 -4851 1194 2 24 0 0 0 chr4 197325891 197325915 -5002432 + AT_rich Low_complexity Low_complexity 1 24 0 180 250 36 83 chr4 197326481 197326565 -5001782 + MIR3 SINE MIR 121 200 -8 260 241 135 38 chr4 197327454 197327587 -5000760 + L1MC/D LINE L1 5677 5822 -1986 1830 137 164 24 chr4 197328079 197328451 -4999896 + MSTA LTR MaLR 1 424 -4 298 310 161 7 chr4 197328506 197328661 -4999686 - MIR SINE MIR -71 191 13 207 327 36 45 chr4 197329258 197329355 -4998992 + L2 LINE L2 3205 3302 -11 186 43 0 0 chr4 197329355 197329378 -4998969 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 207 327 36 45 chr4 197329378 197329390 -4998957 + L2 LINE L2 3302 3313 0 2080 152 23 0 chr4 197329421 197329769 -4998578 + MER46B DNA MER2_type 2 232 -4 2040 108 17 3 chr4 197331824 197332112 -4996235 + AluSc SINE Alu 1 292 -17 23 0 0 0 chr4 197332502 197332525 -4995822 + AT_rich Low_complexity Low_complexity 1 23 0 1468 187 97 24 chr4 197333998 197334378 -4993969 - LTR52 LTR ERVL -5 416 9 1645 145 7 0 chr4 197334801 197335088 -4993259 - MER67A LTR ERV1 -239 422 1 25 51 0 0 chr4 197335122 197335161 -4993186 + AT_rich Low_complexity Low_complexity 1 39 0 839 201 11 6 chr4 197335303 197335482 -4992865 - L1MD2 LINE L1 -18 6341 6162 578 164 17 26 chr4 197335668 197335802 -4992545 - L1MC4 LINE L1 0 8042 6240 1639 333 81 27 chr4 197336786 197339921 -4988426 + HERV16 LTR ERVL 1726 5143 -621 222 259 37 37 chr4 197340583 197340664 -4987683 + MIR3 SINE MIR 9 89 -119 234 105 0 0 chr4 197340847 197340885 -4987462 + (TC)n Simple_repeat Simple_repeat 1 38 0 2187 115 0 10 chr4 197343394 197343708 -4984639 - AluY SINE Alu 0 311 1 244 324 24 84 chr4 197344969 197345265 -4983082 + L1ME LINE L1 230 507 -5698 238 132 0 0 chr4 197345324 197345362 -4982985 + L1MA9 LINE L1 6069 6106 -206 602 218 27 0 chr4 197345362 197345472 -4982875 + AluJb SINE Alu 150 262 -50 6394 120 31 2 chr4 197345567 197346612 -4981735 - Tigger1 DNA MER2_type 0 2418 1344 3880 192 53 9 chr4 197346614 197347804 -4980543 + L1PB4 LINE L1 4547 5820 -336 306 0 0 0 chr4 197347804 197347838 -4980509 + (CA)n Simple_repeat Simple_repeat 2 35 0 3880 192 53 9 chr4 197347838 197348189 -4980158 + L1PB4 LINE L1 5820 6154 -2 7877 136 27 9 chr4 197348213 197349545 -4978802 - Tigger1 DNA MER2_type -1062 1356 1 387 248 45 19 chr4 197349553 197349889 -4978458 + L1ME LINE L1 1921 2316 -4080 285 296 93 36 chr4 197349922 197350361 -4977986 - L1M4 LINE L1 -3173 2973 2510 22 35 0 0 chr4 197350497 197350526 -4977821 + AT_rich Low_complexity Low_complexity 1 29 0 2994 271 163 27 chr4 197351549 197353285 -4975062 + L2 LINE L2 1196 3174 -139 183 162 0 0 chr4 197353518 197353555 -4974792 + (TCCA)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chr4 197354655 197354675 -4973672 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 187 228 174 76 chr4 197354887 197354979 -4973368 - L2 LINE L2 -4 3268 3168 257 120 0 20 chr4 197355791 197355841 -4972506 - AluJo SINE Alu -1 301 253 1005 197 20 25 chr4 197355841 197356039 -4972308 - AluJo SINE Alu -115 197 1 216 354 52 10 chr4 197356158 197356254 -4972093 + MIR SINE MIR 46 145 -63 2142 110 13 10 chr4 197356795 197357104 -4971243 + AluSg SINE Alu 1 310 0 387 301 40 17 chr4 197357687 197357860 -4970487 + MER63A DNA MER1_type 33 209 -1 220 309 157 36 chr4 197357957 197358206 -4970141 - L2 LINE L2 -181 3091 2813 276 349 41 12 chr4 197358313 197358485 -4969862 - L2 LINE L2 -577 2737 2561 23 0 0 0 chr4 197359578 197359601 -4968746 + AT_rich Low_complexity Low_complexity 1 23 0 207 294 29 29 chr4 197359755 197359779 -4968568 + MIR SINE MIR 24 47 -215 1945 142 7 16 chr4 197359779 197360082 -4968265 - AluSx SINE Alu -12 300 1 207 294 29 29 chr4 197360082 197360125 -4968222 + MIR SINE MIR 46 91 -171 200 353 52 26 chr4 197361656 197361772 -4966575 + L2 LINE L2 3190 3308 -5 30 27 0 0 chr4 197365439 197365476 -4962871 + AT_rich Low_complexity Low_complexity 1 37 0 2515 174 11 0 chr4 197365650 197366120 -4962227 + L1MB2 LINE L1 5688 6162 -9 755 165 6 18 chr4 197366476 197366646 -4961701 + GA-rich Low_complexity Low_complexity 1 168 0 2316 72 0 23 chr4 197367217 197367521 -4960826 + AluY SINE Alu 2 298 -13 2214 119 0 0 chr4 197368294 197368604 -4959743 + AluSg SINE Alu 1 310 0 485 302 0 0 chr4 197369145 197369324 -4959023 + (CA)n Simple_repeat Simple_repeat 1 179 0 205 327 0 0 chr4 197369339 197369443 -4958904 + (CA)n Simple_repeat Simple_repeat 1 104 0 1559 221 57 4 chr4 197370525 197371055 -4957292 + L1MC4 LINE L1 7200 7706 -102 2264 233 95 29 chr4 197371105 197371853 -4956494 - MER21B LTR ERV1 -44 819 23 355 228 0 13 chr4 197371879 197371958 -4956389 - MER21B LTR ERV1 -773 90 13 416 225 0 17 chr4 197372019 197372139 -4956208 + L1MC4 LINE L1 7925 8042 0 825 201 11 6 chr4 197372339 197372518 -4955829 + L1MD2 LINE L1 6162 6341 -18 25 51 0 0 chr4 197372660 197372699 -4955648 + AT_rich Low_complexity Low_complexity 1 39 0 1555 142 7 0 chr4 197372733 197373007 -4955340 + MER67A LTR ERV1 1 274 -240 1347 208 89 16 chr4 197373443 197373823 -4954524 + LTR52 LTR ERVL 9 416 -5 23 0 0 0 chr4 197375296 197375319 -4953028 + AT_rich Low_complexity Low_complexity 1 23 0 2137 97 17 3 chr4 197375709 197375997 -4952350 - AluSc SINE Alu -17 292 1 2057 152 23 0 chr4 197378052 197378400 -4949947 - MER46B DNA MER2_type -4 232 2 203 327 36 45 chr4 197378431 197378443 -4949904 - L2 LINE L2 0 3313 3302 186 43 0 0 chr4 197378443 197378466 -4949881 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 203 327 36 45 chr4 197378466 197378563 -4949784 - L2 LINE L2 -11 3302 3205 300 310 161 7 chr4 197379160 197379315 -4949032 + MIR SINE MIR 13 191 -71 1836 137 164 24 chr4 197379370 197379742 -4948605 - MSTA LTR MaLR -4 424 1 359 241 135 38 chr4 197380234 197380367 -4947980 - L1MC/D LINE L1 -1986 5822 5677 24 0 0 0 chr4 197381905 197381929 -4946418 + AT_rich Low_complexity Low_complexity 1 24 0 2977 258 48 32 chr4 197382299 197383920 -4944427 + L1MCb LINE L1 2 1638 -4851 812 246 60 5 chr4 197383935 197384317 -4944030 + L1MCb LINE L1 3287 3689 -2875 986 248 23 90 chr4 197384390 197384870 -4943477 - L1MCb LINE L1 -5450 595 148 228 248 132 76 chr4 197385246 197385722 -4942625 + HAL1b LINE L1 73 575 -773 316 356 22 22 chr4 197385731 197385866 -4942481 + HAL1b LINE L1 634 768 -580 33 90 0 0 chr4 197385919 197386008 -4942339 + AT_rich Low_complexity Low_complexity 1 89 0 21 0 0 0 chr4 197386082 197386103 -4942244 + AT_rich Low_complexity Low_complexity 1 21 0 30 59 0 0 chr4 197386132 197386183 -4942164 + AT_rich Low_complexity Low_complexity 1 51 0 278 234 117 120 chr4 197386283 197386701 -4941646 - MLT1H LTR MaLR -23 526 110 2121 139 0 7 chr4 197386763 197387072 -4941275 + AluSx SINE Alu 1 307 -5 2135 127 10 0 chr4 197387299 197387606 -4940741 + AluSq SINE Alu 1 310 -3 1244 159 35 39 chr4 197387752 197387797 -4940550 - L1PA16 LINE L1 -9 6157 6113 2939 80 57 12 chr4 197387797 197387838 -4940509 - MLT2A1 LTR ERVL 0 444 406 425 19 19 0 chr4 197387838 197387892 -4940455 + (TA)n Simple_repeat Simple_repeat 1 55 0 2939 80 57 12 chr4 197387892 197388275 -4940072 - MLT2A1 LTR ERVL -38 406 1 1244 159 35 39 chr4 197388275 197388487 -4939860 - L1PA16 LINE L1 -53 6113 5901 1787 210 13 106 chr4 197388487 197388547 -4939800 + L1MB8 LINE L1 91 155 -6704 1928 152 0 3 chr4 197388547 197388866 -4939481 - AluSx SINE Alu 0 318 1 1787 210 13 106 chr4 197388866 197389341 -4939006 + L1MB8 LINE L1 155 577 -6282 602 184 30 49 chr4 197389369 197389585 -4938762 - MER31B LTR ERV1 -147 319 1 1518 261 49 40 chr4 197389595 197390488 -4937859 + L1MB8 LINE L1 3344 4244 -2713 321 165 59 12 chr4 197390528 197390613 -4937734 - L1MC2 LINE L1 -319 6025 5937 1088 224 14 0 chr4 197390619 197390829 -4937518 + MER8 DNA MER2_type 21 233 -6 2352 141 22 10 chr4 197390829 197391240 -4937107 + L1MC1 LINE L1 5918 6333 0 5496 210 53 11 chr4 197391240 197392723 -4935624 + L1MB8 LINE L1 4495 6121 -868 288 0 0 0 chr4 197392723 197392755 -4935592 + (CA)n Simple_repeat Simple_repeat 2 33 0 5496 210 53 11 chr4 197392755 197393661 -4934686 + L1MB8 LINE L1 6121 6988 -1 395 359 29 10 chr4 197394730 197394936 -4933411 + MIR SINE MIR 12 221 -41 22 0 0 0 chr4 197395333 197395355 -4932992 + AT_rich Low_complexity Low_complexity 1 22 0 3967 280 199 27 chr4 197395424 197397364 -4930983 - L2 LINE L2 -12 3301 913 1559 201 111 36 chr4 197397364 197397831 -4930516 - MLT1D LTR MaLR -3 502 1 3967 280 199 27 chr4 197397831 197398179 -4930168 - L2 LINE L2 -2400 913 626 886 284 91 29 chr4 197398994 197399476 -4928871 - LTR33 LTR ERVL -7 514 3 298 339 106 67 chr4 197400794 197401124 -4927223 - L2 LINE L2 -7 3265 2923 2154 116 3 3 chr4 197401524 197401818 -4926529 - AluSx SINE Alu -18 294 1 186 222 0 0 chr4 197401949 197402003 -4926344 + (TA)n Simple_repeat Simple_repeat 1 54 0 313 231 19 19 chr4 197402075 197402179 -4926168 + (TA)n Simple_repeat Simple_repeat 2 105 0 362 295 0 16 chr4 197402459 197402588 -4925759 + MLT1K LTR MaLR 445 571 -17 378 0 0 0 chr4 197402983 197403025 -4925322 + (CA)n Simple_repeat Simple_repeat 2 43 0 185 328 33 0 chr4 197404119 197404180 -4924167 - L2 LINE L2 -4 3309 3247 1227 194 126 60 chr4 197404281 197404629 -4923718 - MLT1C LTR MaLR 0 467 83 1424 187 76 9 chr4 197404629 197404971 -4923376 + MLT1A1 LTR MaLR 1 365 0 1227 194 126 60 chr4 197404971 197405059 -4923288 - MLT1C LTR MaLR -384 83 2 1547 175 10 27 chr4 197406755 197407052 -4921295 - AluJo SINE Alu -13 299 8 25 0 0 0 chr4 197407134 197407159 -4921188 + AT_rich Low_complexity Low_complexity 1 25 0 267 333 16 0 chr4 197407535 197407658 -4920689 - LTR33 LTR ERVL -11 510 386 753 320 32 7 chr4 197407708 197407986 -4920361 - LTR33 LTR ERVL -236 285 1 932 207 17 13 chr4 197408010 197408242 -4920105 - MER96B DNA MER1_type? -182 235 3 333 0 0 0 chr4 197409417 197409454 -4918893 + (TG)n Simple_repeat Simple_repeat 1 37 0 734 240 9 30 chr4 197409706 197409939 -4918408 - MLT1D LTR MaLR 0 505 278 2097 82 60 0 chr4 197410245 197410527 -4917820 + AluSg SINE Alu 1 299 -11 254 346 99 0 chr4 197412170 197412271 -4916076 + L2 LINE L2 3160 3270 -2 1791 200 77 0 chr4 197412319 197412709 -4915638 - MSTB LTR MaLR 0 426 7 1358 217 87 3 chr4 197412870 197412910 -4915437 - MLT2B1 LTR ERVL 0 515 480 641 45 11 0 chr4 197412910 197412999 -4915348 + (TAGA)n Simple_repeat Simple_repeat 2 91 0 1358 217 87 3 chr4 197412999 197413384 -4914963 - MLT2B1 LTR ERVL -35 480 1 2348 77 7 3 chr4 197413921 197414219 -4914128 - AluSp SINE Alu -14 299 1 380 310 57 6 chr4 197414985 197415143 -4913204 + MIR SINE MIR 66 231 -31 385 249 104 50 chr4 197415226 197415467 -4912880 - MLT1J LTR MaLR -26 485 232 182 125 0 25 chr4 197415640 197415680 -4912667 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 237 65 0 0 chr4 197415727 197415758 -4912589 + (GA)n Simple_repeat Simple_repeat 2 32 0 279 370 88 6 chr4 197415944 197416125 -4912222 + MIR3 SINE MIR 12 207 -1 1770 179 55 24 chr4 197416560 197416979 -4911368 + MSTB1 LTR MaLR 1 432 0 851 183 136 0 chr4 197418077 197418328 -4910019 + L1MA8 LINE L1 6005 6289 -2 797 295 0 3 chr4 197418584 197418904 -4909443 - AluY SINE Alu 0 319 1 1122 148 5 46 chr4 197420829 197421045 -4907302 + MER20 DNA MER1_type 13 219 0 226 295 133 9 chr4 197421212 197421317 -4907030 + L2 LINE L2 3193 3310 -3 1568 52 5 0 chr4 197421365 197421558 -4906789 + L1PA7 LINE L1 5950 6143 -11 578 267 63 11 chr4 197422669 197422860 -4905487 - MIR SINE MIR -57 205 5 926 295 42 26 chr4 197422988 197423442 -4904905 + MLT1C LTR MaLR 7 467 0 6728 62 11 2 chr4 197423579 197425294 -4903053 - L1PA7 LINE L1 -5 6149 4420 1340 147 20 0 chr4 197425295 197425540 -4902807 - L1P LINE L1 -3341 2805 2556 22849 125 12 83 chr4 197425540 197430288 -4898059 - L1P LINE L1 -1725 4421 12 2287 108 10 0 chr4 197430745 197431052 -4897295 - AluSg SINE Alu 0 310 1 1596 133 87 23 chr4 197431816 197432161 -4896186 + MSTA LTR MaLR 1 367 -61 2115 97 11 0 chr4 197432218 197432535 -4895812 - AluSg SINE Alu 0 320 1 22 35 0 0 chr4 197437058 197437087 -4891260 + AT_rich Low_complexity Low_complexity 1 29 0 502 206 28 14 chr4 197437151 197437292 -4891055 + L1M4 LINE L1 4536 4678 -1468 359 249 73 57 chr4 197437314 197437559 -4890788 + L1M4 LINE L1 4733 4981 -1165 1329 143 27 140 chr4 197437564 197437935 -4890412 + MER7A DNA MER2_type 3 329 -17 251 195 0 0 chr4 197437936 197437977 -4890370 + MER7A DNA MER2_type 297 337 0 392 300 42 1 chr4 197437999 197438431 -4889916 + L1M2 LINE L1 5005 5459 -703 331 258 89 16 chr4 197440361 197440485 -4887862 - L1ME4a LINE L1 -3 6118 5986 316 268 153 38 chr4 197440929 197441112 -4887235 - L1MC4a LINE L1 -1886 5922 5719 583 315 42 13 chr4 197441154 197441333 -4887014 + MIR SINE MIR 2 191 -71 335 213 0 0 chr4 197441333 197441413 -4886934 - MER116 DNA Mariner 0 80 1 583 315 42 13 chr4 197441413 197441471 -4886876 + MIR SINE MIR 191 246 -16 250 239 86 60 chr4 197441509 197441626 -4886721 - L1MC4a LINE L1 -480 5684 5565 220 239 0 33 chr4 197441719 197441811 -4886536 + CT-rich Low_complexity Low_complexity 2 90 0 232 289 19 39 chr4 197442561 197442665 -4885682 + L2 LINE L2 1607 1708 -1606 3619 148 47 85 chr4 197442896 197443893 -4884454 + pTR5 LTR ERV1 742 2020 -418 332 222 0 0 chr4 197443897 197443978 -4884369 + LTR30 LTR ERV1 544 624 -98 1451 80 4 26 chr4 197443998 197444224 -4884123 + pTR5 LTR ERV1 172 392 -2046 225 400 22 0 chr4 197444690 197444780 -4883567 + L2 LINE L2 3143 3234 -38 330 183 0 0 chr4 197446065 197446136 -4882211 + CT-rich Low_complexity Low_complexity 3 73 0 201 50 33 67 chr4 197446138 197446198 -4882149 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 719 181 24 93 chr4 197446265 197446470 -4881877 + MER3 DNA MER1_type 1 191 -18 290 307 27 47 chr4 197446815 197446965 -4881382 + MIR3 SINE MIR 47 193 -15 2155 100 0 0 chr4 197447124 197447403 -4880944 - AluY SINE Alu -32 279 1 261 0 0 0 chr4 197447450 197447479 -4880868 + (CA)n Simple_repeat Simple_repeat 2 30 0 183 186 0 0 chr4 197447513 197447556 -4880791 + T-rich Low_complexity Low_complexity 1 43 0 216 135 0 0 chr4 197447759 197447796 -4880551 + (TG)n Simple_repeat Simple_repeat 2 38 0 212 189 0 0 chr4 197448782 197448819 -4879528 + A-rich Low_complexity Low_complexity 4 40 0 446 33 0 16 chr4 197450274 197450335 -4878012 + (TA)n Simple_repeat Simple_repeat 1 60 0 271 329 56 0 chr4 197450405 197450506 -4877841 - MIR SINE MIR -87 121 16 21 0 0 0 chr4 197450541 197450562 -4877785 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr4 197450677 197450719 -4877628 + AT_rich Low_complexity Low_complexity 1 42 0 317 315 74 9 chr4 197450725 197450833 -4877514 - L2 LINE L2 0 3272 3158 2182 108 0 10 chr4 197451076 197451390 -4876957 - AluSx SINE Alu -1 311 1 21 0 0 0 chr4 197451762 197451783 -4876564 + AT_rich Low_complexity Low_complexity 1 21 0 1802 91 0 4 chr4 197451925 197452156 -4876191 - AluSg/x SINE Alu -7 303 74 243 88 0 0 chr4 197454778 197454812 -4873535 + (TA)n Simple_repeat Simple_repeat 2 35 0 25 51 0 0 chr4 197454818 197454857 -4873490 + AT_rich Low_complexity Low_complexity 1 39 0 376 318 111 0 chr4 197455282 197455474 -4872873 - MIR SINE MIR -4 258 40 328 314 44 20 chr4 197455575 197455823 -4872524 + L1MEc LINE L1 114 367 -6029 * 980 247 70 58 chr4 197455818 197456287 -4872060 + L1M4 LINE L1 4532 5006 -1140 192 179 0 0 chr4 197456520 197456559 -4871788 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2167 122 0 0 chr4 197457048 197457351 -4870996 - AluSg SINE Alu -7 303 1 222 195 21 62 chr4 197458208 197458318 -4870029 + MIR SINE MIR 100 201 -61 1587 240 112 38 chr4 197458404 197458987 -4869360 - MLT1E2 LTR MaLR 0 626 1 265 318 12 12 chr4 197460041 197460126 -4868221 + MIR SINE MIR 22 106 -102 332 348 53 21 chr4 197460436 197460623 -4867724 - MIR SINE MIR -44 218 26 1142 163 10 85 chr4 197460993 197461299 -4867048 - L1MC3 LINE L1 -7 7778 7496 481 262 85 15 chr4 197461299 197461354 -4866993 - MLT1H1 LTR MaLR -225 324 274 429 95 0 0 chr4 197461354 197461417 -4866930 + (CA)n Simple_repeat Simple_repeat 1 63 0 481 262 85 15 chr4 197461417 197461609 -4866738 - MLT1H1 LTR MaLR -275 274 33 2437 90 0 0 chr4 197463346 197463657 -4864690 + AluY SINE Alu 1 311 0 183 162 0 0 chr4 197463991 197464028 -4864319 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 30 27 0 0 chr4 197464143 197464180 -4864167 + AT_rich Low_complexity Low_complexity 1 37 0 243 135 0 0 chr4 197465734 197465771 -4862576 + MER5A DNA MER1_type 35 71 -118 6786 124 120 100 chr4 197466242 197467508 -4860839 - pTR5 LTR ERV1 0 2438 1128 2819 16 0 0 chr4 197467508 197467821 -4860526 + AluYb8 SINE Alu 1 313 -5 6786 124 120 100 chr4 197467821 197468216 -4860131 - pTR5 LTR ERV1 -1310 1128 743 302 258 0 21 chr4 197468870 197468963 -4859384 + L1MC/D LINE L1 5728 5818 -1990 206 320 10 0 chr4 197469105 197469205 -4859142 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 1464 113 66 19 chr4 197469370 197469386 -4858961 - L1MA2 LINE L1 -2 6302 6288 2610 157 133 18 chr4 197469386 197469934 -4858413 + LTR36 LTR ERV1 1 611 0 1464 113 66 19 chr4 197469934 197470174 -4858173 - L1MA2 LINE L1 -16 6288 6034 587 62 0 12 chr4 197470513 197470593 -4857754 - MADE1 DNA Mariner -1 79 1 245 309 12 0 chr4 197471256 197471337 -4857010 + MIR3 SINE MIR 121 202 -6 2012 114 0 39 chr4 197471824 197472131 -4856216 + AluSc SINE Alu 1 295 -14 219 197 33 82 chr4 197473185 197473246 -4855101 - MIR3 SINE MIR -27 181 124 2024 118 20 17 chr4 197473592 197473889 -4854458 + AluSg SINE Alu 1 298 -12 206 253 12 0 chr4 197474107 197474190 -4854157 + (TATG)n Simple_repeat Simple_repeat 3 86 0 466 325 69 29 chr4 197475455 197475701 -4852646 + MIR SINE MIR 4 259 -3 202 189 0 0 chr4 197476193 197476230 -4852117 + L2 LINE L2 3231 3267 -5 1539 171 58 80 chr4 197479233 197479631 -4848716 + MLT1B LTR MaLR 1 389 -1 1276 327 45 26 chr4 197479694 197480086 -4848261 - L2 LINE L2 -343 2971 2563 1388 212 94 29 chr4 197480086 197480501 -4847846 - LTR47B LTR ERVL 0 443 2 1276 327 45 26 chr4 197480501 197480713 -4847634 - L2 LINE L2 -751 2563 2356 343 278 105 19 chr4 197480984 197481146 -4847201 - MLT1H LTR MaLR -322 227 52 1494 265 221 20 chr4 197481149 197481791 -4846556 - L2 LINE L2 -1031 2283 1513 746 147 71 18 chr4 197481814 197481984 -4846363 + MER20 DNA MER1_type 38 216 -3 268 333 21 0 chr4 197481989 197482082 -4846265 - L2 LINE L2 -1803 1511 1417 1456 181 92 5 chr4 197482082 197482394 -4845953 + MLT2C2 LTR ERVL 1 348 -49 236 30 30 0 chr4 197482394 197482427 -4845920 + (TCTA)n Simple_repeat Simple_repeat 3 36 0 1456 181 92 5 chr4 197482427 197482482 -4845865 + MLT2C2 LTR ERVL 348 397 0 1770 266 117 62 chr4 197482484 197482681 -4845666 - L2 LINE L2 -1895 1419 1234 1932 120 33 0 chr4 197482681 197482982 -4845365 - AluSx SINE Alu 0 310 1 1770 266 117 62 chr4 197482982 197483686 -4844661 - L2 LINE L2 -2080 1234 467 207 224 53 53 chr4 197484765 197484841 -4843506 + MIR SINE MIR 46 121 -87 888 223 28 0 chr4 197484944 197485155 -4843192 - L1M4 LINE L1 -480 5698 5482 26 64 0 0 chr4 197485939 197485986 -4842361 + AT_rich Low_complexity Low_complexity 1 47 0 3937 187 100 32 chr4 197486037 197487367 -4840980 - L1MB8 LINE L1 -1 6177 4754 1902 220 29 64 chr4 197487992 197488479 -4839868 + MER74A LTR ERVL 1 466 -92 1817 104 4 4 chr4 197488479 197488720 -4839627 - AluSx SINE Alu -71 241 1 1902 220 29 64 chr4 197488720 197488810 -4839537 + MER74A LTR ERVL 466 558 0 2551 180 100 7 chr4 197488951 197489511 -4838836 - LTR26E LTR ERV1 -10 612 1 926 290 27 21 chr4 197490178 197490664 -4837683 + L1M4 LINE L1 3467 3955 -2191 554 345 75 27 chr4 197490700 197490993 -4837354 + L2 LINE L2 2461 2767 -547 26 30 0 0 chr4 197491448 197491481 -4836866 + AT_rich Low_complexity Low_complexity 1 33 0 447 373 56 16 chr4 197491542 197491864 -4836483 - L1ME LINE L1 -352 5769 5435 1370 120 120 0 chr4 197492746 197492979 -4835368 - L1PA16 LINE L1 -12 6154 5894 1820 201 43 92 chr4 197493397 197494063 -4834284 + LTR8A LTR ERV1 34 667 -60 270 0 0 0 chr4 197494063 197494093 -4834254 + (T)n Simple_repeat Simple_repeat 1 30 0 384 283 59 82 chr4 197494402 197494621 -4833726 - MIR SINE MIR -13 249 36 27 0 0 0 chr4 197494915 197494942 -4833405 + AT_rich Low_complexity Low_complexity 1 27 0 255 326 95 20 chr4 197496299 197496446 -4831901 + L2 LINE L2 2872 3029 -243 372 256 47 0 chr4 197497809 197497938 -4830409 + (CAGAGA)n Simple_repeat Simple_repeat 1 135 0 309 206 110 66 chr4 197497938 197498074 -4830273 + L1MEc LINE L1 241 382 -6014 483 221 0 101 chr4 197498115 197498314 -4830033 + (CAGAGA)n Simple_repeat Simple_repeat 1 179 0 707 242 151 18 chr4 197498322 197498607 -4829740 + MLT1C LTR MaLR 181 465 -2 408 244 12 0 chr4 197499284 197499370 -4828977 - MIR3 SINE MIR -41 167 81 1830 178 11 14 chr4 197500484 197500850 -4827497 + MLT1A1 LTR MaLR 1 365 0 195 139 0 0 chr4 197501308 197501344 -4827003 + (A)n Simple_repeat Simple_repeat 1 36 0 245 218 24 137 chr4 197501397 197501521 -4826826 + MER91C DNA MER1_type 1 110 -30 292 155 28 0 chr4 197502019 197502090 -4826257 + (CA)n Simple_repeat Simple_repeat 2 74 0 251 176 20 0 chr4 197502494 197502545 -4825802 + MSTB2 LTR MaLR 406 457 0 985 304 70 46 chr4 197504028 197504640 -4823707 + L2 LINE L2 2092 2718 -596 2616 88 8 3 chr4 197505106 197505459 -4822888 + THE1A LTR MaLR 1 355 0 11819 94 1 0 chr4 197505460 197507037 -4821310 + THE1A-int LTR MaLR 2 1580 0 2674 88 6 0 chr4 197507037 197507390 -4820957 + THE1A LTR MaLR 1 355 0 586 328 78 34 chr4 197508303 197508660 -4819687 + MLT1J2 LTR MaLR 78 450 0 352 311 62 53 chr4 197508849 197509058 -4819289 + MIR SINE MIR 20 230 -32 21 36 0 0 chr4 197509556 197509584 -4818763 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 197509774 197509798 -4818549 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 197509892 197509917 -4818430 + AT_rich Low_complexity Low_complexity 1 25 0 233 175 38 12 chr4 197509953 197510033 -4818314 + CT-rich Low_complexity Low_complexity 1 82 0 440 70 127 0 chr4 197511082 197511153 -4817194 + MADE1 DNA Mariner 1 80 0 1146 208 102 42 chr4 197511807 197512110 -4816237 - MLT1A1 LTR MaLR -12 353 27 1587 143 87 39 chr4 197512110 197512467 -4815880 + THE1C LTR MaLR 1 374 -1 1146 208 102 42 chr4 197512467 197512495 -4815852 - MLT1A1 LTR MaLR -338 27 2 25 31 0 0 chr4 197514004 197514036 -4814311 + AT_rich Low_complexity Low_complexity 1 32 0 341 312 94 35 chr4 197514182 197514582 -4813765 - L1MC4 LINE L1 -150 7811 7385 398 251 101 13 chr4 197514680 197514907 -4813440 - L1MC4 LINE L1 -695 7347 7101 425 271 43 147 chr4 197515054 197515402 -4812945 - L1MC4 LINE L1 -932 7063 6769 1494 199 47 10 chr4 197515402 197515699 -4812648 + AluJo SINE Alu 1 308 -4 425 271 43 147 chr4 197515699 197515793 -4812554 - L1MC4 LINE L1 -1226 6769 6667 3168 178 40 21 chr4 197515820 197516479 -4811868 + LTR51 LTR ERV1 1 671 0 22 0 0 0 chr4 197518296 197518318 -4810029 + AT_rich Low_complexity Low_complexity 1 22 0 405 0 0 0 chr4 197519584 197519629 -4808718 + (TA)n Simple_repeat Simple_repeat 1 45 0 1551 167 60 18 chr4 197520388 197520669 -4807678 - AluJb SINE Alu -4 308 16 2434 66 0 31 chr4 197521131 197521450 -4806897 - AluSc SINE Alu 0 309 1 1349 222 3 22 chr4 197521750 197522061 -4806286 + MLT2B1 LTR ERVL 1 305 -215 912 167 46 11 chr4 197522044 197522218 -4806129 + MLT2B2 LTR ERVL 336 515 0 * 2060 108 7 0 chr4 197522247 197522546 -4805801 - AluSx SINE Alu 0 302 2 241 314 57 0 chr4 197524109 197524179 -4804168 - L2 LINE L2 -91 3181 3108 186 293 93 73 chr4 197525239 197525444 -4802903 - L2 LINE L2 -337 2977 2769 24 77 0 0 chr4 197526244 197526296 -4802051 + AT_rich Low_complexity Low_complexity 1 52 0 189 278 104 43 chr4 197527226 197527341 -4801006 + MIR SINE MIR 11 132 -130 188 306 10 82 chr4 197528001 197528099 -4800248 - MIR3 SINE MIR -6 202 112 1174 299 187 31 chr4 197528972 197529696 -4798651 + L2 LINE L2 1686 2627 -687 2335 98 10 0 chr4 197529696 197530003 -4798344 - AluSq SINE Alu -3 310 1 1174 299 187 31 chr4 197530003 197530333 -4798014 + L2 LINE L2 2627 2904 -410 333 327 27 9 chr4 197530478 197530588 -4797759 + MIR SINE MIR 50 161 -101 463 227 62 8 chr4 197530588 197530716 -4797631 + MIR SINE MIR 127 261 -1 355 292 95 15 chr4 197530727 197530864 -4797483 - MIR SINE MIR -114 148 1 2093 113 7 0 chr4 197532115 197532399 -4795948 + AluSc SINE Alu 1 286 -23 34 24 0 0 chr4 197532402 197532443 -4795904 + AT_rich Low_complexity Low_complexity 1 41 0 557 311 44 16 chr4 197534395 197534643 -4793704 - MIR SINE MIR -2 260 6 2150 147 98 3 chr4 197534928 197535317 -4793030 + MSTB LTR MaLR 1 426 0 285 316 0 20 chr4 197535354 197535452 -4792895 + L2 LINE L2 2621 2716 -598 1523 144 8 0 chr4 197535452 197535716 -4792631 - L1P5 LINE L1 -573 5583 5318 661 285 91 42 chr4 197535758 197536141 -4792206 + L2 LINE L2 2910 3311 -2 2357 102 0 0 chr4 197536353 197536657 -4791690 - AluSc SINE Alu -5 304 1 325 282 215 0 chr4 197537615 197537778 -4790569 - L2 LINE L2 -2 3311 3114 515 230 191 0 chr4 197538007 197538211 -4790136 + MLT1H1 LTR MaLR 311 553 -2 190 176 338 14 chr4 197538676 197538750 -4789597 + L2 LINE L2 1932 2029 -1285 224 382 26 20 chr4 197538753 197538905 -4789442 + L2 LINE L2 2660 2812 -502 2211 90 7 7 chr4 197539470 197539770 -4788577 + AluSg SINE Alu 1 300 -10 473 259 74 95 chr4 197542265 197542590 -4785757 - L2 LINE L2 0 3313 2996 343 296 74 25 chr4 197542987 197543149 -4785198 + L3 LINE CR1 702 871 -706 758 314 133 28 chr4 197543454 197543922 -4784425 + L3 LINE CR1 1044 1560 -17 291 309 125 29 chr4 197544345 197544481 -4783866 - L2 LINE L2 0 3272 3124 2078 54 0 54 chr4 197544956 197545234 -4783113 + AluY SINE Alu 39 301 -10 423 288 37 13 chr4 197545646 197545962 -4782385 + MER93a LTR ERV1 37 369 -4 2234 116 0 22 chr4 197545972 197546292 -4782055 - AluSq SINE Alu 0 313 1 27 29 0 0 chr4 197547579 197547613 -4780734 + AT_rich Low_complexity Low_complexity 1 34 0 444 174 43 0 chr4 197548695 197548787 -4779560 - MER5A DNA MER1_type -83 106 11 238 224 60 30 chr4 197548888 197548955 -4779392 + MER116 DNA Mariner 1 69 -11 239 210 65 32 chr4 197548962 197549024 -4779323 + MER116 DNA Mariner 1 64 -16 689 309 162 33 chr4 197549198 197549687 -4778660 - MLT1K LTR MaLR -2 586 35 492 240 94 23 chr4 197549735 197550014 -4778333 + MLT1I LTR MaLR 75 407 -2 2184 108 0 3 chr4 197550989 197551275 -4777072 + AluSx SINE Alu 1 285 -27 2644 113 5 22 chr4 197551469 197551839 -4776508 + THE1B LTR MaLR 1 364 0 12896 81 4 1 chr4 197551839 197553414 -4774933 + THE1B-int LTR MaLR 1 1580 0 2514 114 17 20 chr4 197553417 197553775 -4774572 + THE1B LTR MaLR 4 360 -4 1813 106 110 0 chr4 197553776 197554049 -4774298 + AluSc SINE Alu 1 303 -6 341 354 9 0 chr4 197554138 197554251 -4774096 + L2 LINE L2 3156 3269 -3 2232 95 0 13 chr4 197554395 197554699 -4773648 + AluY SINE Alu 1 300 -11 271 362 24 47 chr4 197555524 197555651 -4772696 + L2 LINE L2 3149 3272 0 328 259 52 52 chr4 197556164 197556187 -4772160 + MIR SINE MIR 116 138 -124 2046 111 7 3 chr4 197556187 197556475 -4771872 + AluSx SINE Alu 21 309 -3 328 259 52 52 chr4 197556475 197556586 -4771761 + MIR SINE MIR 137 250 -12 765 164 0 8 chr4 197606825 197606959 -4721388 - FLAM_C SINE Alu 0 133 1 261 281 34 22 chr4 197607492 197607581 -4720766 + MIR SINE MIR 59 148 -114 327 25 0 0 chr4 197607622 197607662 -4720685 + (CA)n Simple_repeat Simple_repeat 1 40 0 5202 124 10 3 chr4 197608972 197609865 -4718482 + L1PA16 LINE L1 5221 6153 -13 180 293 19 85 chr4 197609899 197610005 -4718342 - MIR3 SINE MIR -22 186 88 1862 209 29 56 chr4 197610005 197610560 -4717787 - MER67A LTR ERV1 -3 540 1 1030 262 103 11 chr4 197611411 197611789 -4716558 + L1M4 LINE L1 4499 4911 -1235 1425 271 66 63 chr4 197611813 197612415 -4715932 + MLT1E2 LTR MaLR 23 626 0 1224 242 53 22 chr4 197612466 197612920 -4715427 + LTR37B LTR ERV1 1 468 0 215 211 35 0 chr4 197612999 197613056 -4715291 + (TAAA)n Simple_repeat Simple_repeat 3 61 0 294 364 132 0 chr4 197614345 197614474 -4713873 + MIR3 SINE MIR 35 180 -28 1516 203 10 23 chr4 197615916 197616226 -4712121 + AluJo SINE Alu 5 310 -2 21 0 0 0 chr4 197616226 197616247 -4712100 + AT_rich Low_complexity Low_complexity 1 21 0 185 65 32 0 chr4 197616589 197616620 -4711727 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 192 355 65 0 chr4 197616715 197616822 -4711525 + MIR3 SINE MIR 89 202 -6 23 68 0 0 chr4 197617381 197617425 -4710922 + AT_rich Low_complexity Low_complexity 1 44 0 235 230 40 0 chr4 197618390 197618464 -4709883 + (TA)n Simple_repeat Simple_repeat 2 78 0 40 65 0 28 chr4 197618583 197618691 -4709656 + AT_rich Low_complexity Low_complexity 1 105 0 1773 183 13 45 chr4 197618892 197619269 -4709078 + MLT1A1 LTR MaLR 1 365 0 183 100 0 0 chr4 197619329 197619359 -4708988 + (TA)n Simple_repeat Simple_repeat 2 31 0 1630 266 107 41 chr4 197619604 197621081 -4707266 + L1ME LINE L1 6 1587 -4493 838 269 102 23 chr4 197621137 197621784 -4706563 + L1ME LINE L1 1754 2403 -3677 462 291 104 67 chr4 197621870 197622014 -4706333 + L1ME LINE L1 3645 3782 -2298 1758 92 0 0 chr4 197622014 197622243 -4706104 - AluY SINE Alu -9 302 74 462 291 104 67 chr4 197622243 197622503 -4705844 + L1ME LINE L1 3782 4064 -2016 1309 301 115 22 chr4 197623132 197623802 -4704545 + L1MEc LINE L1 986 1717 -5631 2569 250 50 20 chr4 197623865 197625016 -4703331 + L1MEc LINE L1 2943 4099 -3068 1707 269 76 27 chr4 197625027 197625775 -4702572 + L1M2 LINE L1 70 854 -6237 * 10965 171 23 23 chr4 197625762 197628101 -4700246 + L1M2 LINE L1 4124 6465 -743 526 288 141 0 chr4 197628129 197628299 -4700048 - MIR SINE MIR -30 232 39 210 71 0 0 chr4 197630725 197630753 -4697594 + (CAAT)n Simple_repeat Simple_repeat 3 30 0 601 331 119 42 chr4 197631474 197631688 -4696659 + L2 LINE L2 2002 2198 -1116 2227 80 0 3 chr4 197631688 197632001 -4696346 + AluSg SINE Alu 1 312 0 601 331 119 42 chr4 197632001 197632573 -4695774 + L2 LINE L2 2198 2850 -464 263 274 10 142 chr4 197632637 197632834 -4695513 + L2 LINE L2 2914 3084 -188 300 273 33 93 chr4 197633098 197633248 -4695099 + L2 LINE L2 3168 3308 -5 231 36 0 0 chr4 197633282 197633310 -4695037 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 2123 116 0 0 chr4 197633310 197633587 -4694760 - AluSc SINE Alu -32 277 1 508 251 139 0 chr4 197633728 197633943 -4694404 + L1ME4a LINE L1 5588 5832 -289 5211 152 25 5 chr4 197633972 197635364 -4692983 - L1PA13 LINE L1 -33 6130 4713 709 142 0 0 chr4 197635367 197635480 -4692867 - L1PA13 LINE L1 -2546 3600 3488 2350 60 40 0 chr4 197636013 197636311 -4692036 - AluY SINE Alu -1 310 1 207 0 0 0 chr4 197636647 197636670 -4691677 + (TAA)n Simple_repeat Simple_repeat 2 24 0 308 343 48 27 chr4 197636729 197636875 -4691472 + L1MA9 LINE L1 1455 1603 -5565 12650 225 46 34 chr4 197636997 197638245 -4690102 + L1MA9 LINE L1 1559 2791 -4542 194 0 39 0 chr4 197638245 197638271 -4690076 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 12650 225 46 34 chr4 197638271 197639898 -4688449 + L1MA9 LINE L1 2791 4397 -2936 1917 132 38 0 chr4 197639898 197640186 -4688161 + AluSp SINE Alu 1 299 -14 12650 225 46 34 chr4 197640186 197642308 -4686039 + L1MA9 LINE L1 4397 6325 -1008 3585 175 36 16 chr4 197642308 197642756 -4685591 + MER44D DNA MER2_type 4 472 -2115 1851 178 0 0 chr4 197642756 197643065 -4685282 + AluSx SINE Alu 1 309 -3 3585 175 36 16 chr4 197643065 197643303 -4685044 + MER44D DNA MER2_type 472 704 -1 12650 225 46 34 chr4 197643303 197643804 -4684543 + L1MA9 LINE L1 6325 6819 -514 297 0 0 0 chr4 197643804 197643837 -4684510 + (TA)n Simple_repeat Simple_repeat 2 34 0 12650 225 46 34 chr4 197643837 197644325 -4684022 + L1MA9 LINE L1 6819 7333 0 381 276 106 51 chr4 197645214 197645431 -4682916 + LTR16A LTR ERVL 22 250 -200 1263 377 27 21 chr4 197645436 197646707 -4681640 + ERVL LTR ERVL 3780 5057 -707 466 239 159 31 chr4 197647680 197647843 -4680504 + MIR SINE MIR 79 262 0 515 221 60 13 chr4 197647891 197648040 -4680307 - MIR SINE MIR -49 213 59 2380 69 0 0 chr4 197648254 197648544 -4679803 + AluY SINE Alu 1 290 -21 240 35 0 0 chr4 197648971 197649000 -4679347 + (GA)n Simple_repeat Simple_repeat 2 30 0 3265 190 31 23 chr4 197649006 197649776 -4678571 + L1MB8 LINE L1 5403 6178 0 541 298 164 19 chr4 197650026 197650446 -4677901 + L1ME4a LINE L1 5629 6109 -12 23 0 0 0 chr4 197650454 197650477 -4677870 + AT_rich Low_complexity Low_complexity 1 23 0 1313 309 68 44 chr4 197650994 197651657 -4676690 + MER115 DNA AcHobo 1 679 -14 208 248 177 18 chr4 197651998 197652111 -4676236 + MIR SINE MIR 76 206 -56 6956 42 10 45 chr4 197652859 197653816 -4674531 + SVA Other Other 16 939 -447 2254 31 0 0 chr4 197653916 197654177 -4674170 + AluY SINE Alu 40 300 -11 2081 91 80 0 chr4 197654552 197654838 -4673509 - AluSq SINE Alu -4 309 1 550 210 36 7 chr4 197655052 197655190 -4673157 + MLT1A1 LTR MaLR 1 142 -223 4790 145 27 10 chr4 197655194 197655507 -4672840 - L1PB4 LINE L1 -3 6153 5847 2425 88 0 0 chr4 197655507 197655812 -4672535 - AluY SINE Alu -6 305 1 4790 145 27 10 chr4 197655812 197656471 -4671876 - L1PB4 LINE L1 -309 5847 5162 2757 230 13 0 chr4 197656459 197657162 -4671185 + L1PB4 LINE L1 4447 5158 -988 * 607 234 19 13 chr4 197657180 197657338 -4671009 + MLT1A1 LTR MaLR 197 355 -10 566 294 106 19 chr4 197657430 197657798 -4670549 + L1MEc LINE L1 1268 1667 -4729 1829 107 4 44 chr4 197657938 197658208 -4670139 - AluSg SINE Alu -51 259 1 189 288 45 0 chr4 197658617 197658683 -4669664 - MIR SINE MIR -108 154 86 315 320 115 19 chr4 197660434 197660590 -4667757 + MIR SINE MIR 32 202 -60 192 179 0 0 chr4 197661058 197661097 -4667250 + (TG)n Simple_repeat Simple_repeat 2 40 0 2048 101 56 3 chr4 197661310 197661598 -4666749 + AluSc SINE Alu 6 308 -1 24 96 0 0 chr4 197661904 197661977 -4666370 + AT_rich Low_complexity Low_complexity 1 73 0 2048 83 18 0 chr4 197662271 197662708 -4665639 + AluSx SINE Alu 1 442 0 189 107 0 0 chr4 197662708 197662736 -4665611 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 950 148 0 13 chr4 197663657 197663812 -4664535 + FRAM SINE Alu 23 175 -1 230 158 0 0 chr4 197663852 197663890 -4664457 - L1M2 LINE L1 -652 5660 5623 30 59 0 0 chr4 197664164 197664215 -4664132 + AT_rich Low_complexity Low_complexity 1 51 0 1508 178 54 0 chr4 197664467 197664644 -4663703 - AluJb SINE Alu 0 309 111 363 44 0 0 chr4 197664644 197664689 -4663658 + (TG)n Simple_repeat Simple_repeat 2 46 0 1508 178 54 0 chr4 197664689 197664798 -4663549 - AluJb SINE Alu -198 111 9 189 171 0 0 chr4 197665299 197665334 -4663013 + T-rich Low_complexity Low_complexity 1 35 0 315 286 101 108 chr4 197666427 197666838 -4661509 + L1ME4a LINE L1 4240 4646 -1500 2249 98 0 3 chr4 197666838 197667133 -4661214 - AluSx SINE Alu -18 294 1 315 286 101 108 chr4 197667133 197667385 -4660962 + L1ME4a LINE L1 4646 4898 -1248 27 49 0 0 chr4 197667602 197667643 -4660704 + AT_rich Low_complexity Low_complexity 1 41 0 229 247 72 52 chr4 197667695 197667792 -4660555 + MIR SINE MIR 1 99 -163 2187 203 29 36 chr4 197667797 197667856 -4660491 - MER54A LTR ERVL 0 644 586 441 0 0 0 chr4 197667856 197667905 -4660442 + (TA)n Simple_repeat Simple_repeat 2 50 0 1876 109 14 51 chr4 197667913 197668206 -4660141 - AluSp SINE Alu -31 282 1 2187 203 29 36 chr4 197668206 197668978 -4659369 - MER54A LTR ERVL -65 579 12 261 0 0 0 chr4 197668989 197669018 -4659329 + (CA)n Simple_repeat Simple_repeat 1 29 0 387 247 102 0 chr4 197669021 197669166 -4659181 + MIR SINE MIR 99 262 0 441 296 31 64 chr4 197669204 197669623 -4658724 + L1ME4a LINE L1 5267 5671 -2137 22 0 0 0 chr4 197670061 197670083 -4658264 + AT_rich Low_complexity Low_complexity 1 22 0 2378 99 0 0 chr4 197670178 197670471 -4657876 - AluSq SINE Alu -20 293 1 556 295 135 75 chr4 197671853 197672104 -4656243 + L3 LINE CR1 553 788 -789 854 212 0 0 chr4 197672104 197672274 -4656073 + FAM SINE Alu 1 170 -5 556 295 135 75 chr4 197672274 197672541 -4655806 + L3 LINE CR1 788 1102 -475 22 70 0 0 chr4 197672833 197672876 -4655471 + AT_rich Low_complexity Low_complexity 1 43 0 214 402 0 0 chr4 197672975 197673057 -4655290 + L2 LINE L2 3191 3272 0 28 99 0 0 chr4 197673705 197673796 -4654551 + AT_rich Low_complexity Low_complexity 1 91 0 231 247 24 24 chr4 197674016 197674101 -4654246 + L1ME4a LINE L1 5956 6040 -81 228 67 0 0 chr4 197674770 197674800 -4653547 + (A)n Simple_repeat Simple_repeat 1 30 0 391 298 193 6 chr4 197674993 197675154 -4653193 - L2 LINE L2 -575 2739 2549 1062 279 95 53 chr4 197675279 197675827 -4652520 - L2 LINE L2 -798 2516 1946 201 333 5 121 chr4 197675999 197676206 -4652141 + L2 LINE L2 2488 2670 -644 249 316 53 33 chr4 197676213 197676365 -4651982 - L2 LINE L2 -792 2522 2368 2432 76 0 3 chr4 197676407 197676708 -4651639 - AluY SINE Alu -11 300 1 3486 214 26 25 chr4 197676735 197677329 -4651018 + L1MB8 LINE L1 4373 4965 -1213 1768 153 3 55 chr4 197677329 197677474 -4650873 + AluJb SINE Alu 1 152 -160 2144 109 0 24 chr4 197677474 197677768 -4650579 + AluSg SINE Alu 3 289 -21 1768 153 3 55 chr4 197677768 197677948 -4650399 + AluJb SINE Alu 152 309 -3 3486 214 26 25 chr4 197677948 197678480 -4649867 + L1MB8 LINE L1 4965 5495 -683 410 227 10 0 chr4 197678490 197678587 -4649760 + L1MB8 LINE L1 5607 5704 -462 521 229 54 42 chr4 197678589 197678829 -4649518 + L1MB8 LINE L1 5936 6178 0 4892 202 54 86 chr4 197678845 197681165 -4647182 + L1MC3 LINE L1 4837 7230 -555 2148 122 3 0 chr4 197681165 197681460 -4646887 + AluSc SINE Alu 1 296 -13 4892 202 54 86 chr4 197681460 197682072 -4646275 + L1MC3 LINE L1 7230 7577 -208 2165 112 7 0 chr4 197682072 197682366 -4645981 + AluSx SINE Alu 1 296 -16 4892 202 54 86 chr4 197682366 197682549 -4645798 + L1MC3 LINE L1 7577 7764 -21 2579 230 60 14 chr4 197685820 197686911 -4641436 + L1ME2 LINE L1 5011 6149 -15 1042 119 15 5 chr4 197687759 197687960 -4640387 + L1PA16 LINE L1 5288 5490 -676 * 28526 94 17 15 chr4 197687959 197690573 -4637774 + L1PA7 LINE L1 748 3355 -3114 1889 127 4 0 chr4 197690573 197690833 -4637514 + AluSq SINE Alu 1 261 -52 28526 94 17 15 chr4 197690833 197690860 -4637487 + L1PA7 LINE L1 3355 3380 -3089 243 0 0 0 chr4 197690860 197690887 -4637460 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 28526 94 17 15 chr4 197690887 197693927 -4634420 + L1PA7 LINE L1 3380 6467 -2 3813 144 33 5 chr4 197693927 197694593 -4633754 + L1PA16 LINE L1 5476 6166 0 2284 105 6 10 chr4 197695372 197695685 -4632662 - AluSx SINE Alu 0 312 1 2605 17 0 0 chr4 197696075 197696366 -4631981 + AluYa5 SINE Alu 21 311 0 1822 139 35 3 chr4 197696383 197696670 -4631677 + AluSc SINE Alu 1 296 -13 1668 142 25 0 chr4 197697619 197697893 -4630454 + MER1B DNA MER1_type 55 335 -4 592 291 47 80 chr4 197698117 197698543 -4629804 + HAL1 LINE L1 842 1253 -1254 331 345 9 0 chr4 197698557 197698667 -4629680 - MLT1K LTR MaLR -296 292 182 256 231 126 56 chr4 197698980 197699123 -4629224 + HAL1 LINE L1 2246 2398 -109 1983 135 42 15 chr4 197699210 197699544 -4628803 - MER2 DNA MER2_type -1 343 1 1094 231 45 45 chr4 197699758 197700134 -4628213 - MER58D DNA MER1_type -5 381 6 796 222 89 26 chr4 197700179 197700449 -4627898 - MER5C DNA MER1_type -1 323 37 740 235 86 12 chr4 197702797 197703040 -4625307 - MIR SINE MIR 0 262 2 221 287 222 36 chr4 197703133 197703300 -4625047 + MIR SINE MIR 45 242 -20 225 0 0 0 chr4 197703961 197703986 -4624361 + (TG)n Simple_repeat Simple_repeat 2 26 0 373 206 0 0 chr4 197703986 197704059 -4624288 - L1MC/D LINE L1 -687 5672 5600 3973 168 69 12 chr4 197704072 197704923 -4623424 - L1MC1 LINE L1 -5 6328 5429 2138 139 0 7 chr4 197705648 197705958 -4622389 + AluSx SINE Alu 1 308 -4 187 319 75 0 chr4 197706746 197706840 -4621507 + MER5A DNA MER1_type 33 133 -56 264 291 0 13 chr4 197706949 197707028 -4621319 - MIR3 SINE MIR -6 202 125 196 391 60 0 chr4 197709260 197709393 -4618954 + MIR SINE MIR 117 257 -5 234 0 0 0 chr4 197709400 197709426 -4618921 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 438 225 0 0 chr4 197709434 197709514 -4618833 + AluJ/FLAM SINE Alu 1 80 -232 6300 83 24 7 chr4 197709653 197711029 -4617318 + L1PA11 LINE L1 4789 6174 0 305 196 0 0 chr4 197711155 197711211 -4617136 + L1MC4 LINE L1 6648 6703 -1339 197 306 129 0 chr4 197711928 197711990 -4616357 - L2 LINE L2 -54 3218 3149 185 208 0 97 chr4 197712362 197712434 -4615913 + MIR SINE MIR 140 204 -58 1814 246 65 12 chr4 197712536 197713122 -4615225 + L1MB8 LINE L1 5560 6176 -2 270 56 0 0 chr4 197713411 197713447 -4614900 + (CA)n Simple_repeat Simple_repeat 1 36 0 202 355 151 0 chr4 197715316 197715409 -4612938 + MIR SINE MIR 18 124 -138 2009 192 8 8 chr4 197716378 197716774 -4611573 - LOR1b LTR ERV1 0 461 66 1984 113 46 0 chr4 197716795 197717077 -4611270 + AluSg SINE Alu 1 295 -15 616 101 0 0 chr4 197717144 197717233 -4611114 - LOR1b-int LTR ERV1 -2 8118 8030 * 801 98 0 8 chr4 197717232 197717355 -4610992 - LOR1-int LTR ERV1 -2056 6064 5943 691 145 8 0 chr4 197717355 197717472 -4610875 - LOR1a LTR ERV1 0 497 380 * 945 194 119 11 chr4 197717467 197717735 -4610612 - LOR1b LTR ERV1 -164 297 1 887 117 14 7 chr4 197717735 197717880 -4610467 - LOR1-int LTR ERV1 -2174 5946 5801 * 16025 103 33 38 chr4 197717870 197719193 -4609154 - LOR1-int LTR ERV1 -2596 5524 4197 2285 98 0 0 chr4 197719193 197719489 -4608858 - AluSg1 SINE Alu -13 296 1 16025 103 33 38 chr4 197719489 197721021 -4607326 - LOR1-int LTR ERV1 -3923 4197 2682 277 218 128 0 chr4 197721022 197721100 -4607247 - LOR1b LTR ERV1 -371 90 3 2171 110 7 0 chr4 197721127 197721426 -4606921 - AluSx SINE Alu -11 301 1 21 0 0 0 chr4 197722716 197722737 -4605610 + AT_rich Low_complexity Low_complexity 1 21 0 352 278 133 19 chr4 197724214 197724228 -4604119 - L1MEd LINE L1 -4745 1582 1571 626 108 10 0 chr4 197724228 197724330 -4604017 - L1MA3 LINE L1 0 6305 6203 352 278 133 19 chr4 197724330 197724585 -4603762 - L1MEd LINE L1 -4756 1571 1282 255 289 40 0 chr4 197724760 197724836 -4603511 - LTR33A LTR ERVL -348 175 97 198 264 236 0 chr4 197724918 197724990 -4603357 + L2 LINE L2 3225 3313 0 362 327 27 41 chr4 197725360 197725562 -4602785 + MIR SINE MIR 4 203 -59 1733 176 31 31 chr4 197725971 197726352 -4601995 - L1MB8 LINE L1 0 6178 5798 2500 46 0 3 chr4 197728102 197728404 -4599943 - AluY SINE Alu -10 301 1 2415 55 0 3 chr4 197730931 197731222 -4597125 - AluY SINE Alu -21 290 1 32 26 0 0 chr4 197731914 197731953 -4596394 + AT_rich Low_complexity Low_complexity 1 39 0 227 93 23 0 chr4 197732068 197732111 -4596236 + (TTTTTA)n Simple_repeat Simple_repeat 4 47 0 25 0 0 0 chr4 197733015 197733040 -4595307 + AT_rich Low_complexity Low_complexity 1 25 0 2146 95 7 3 chr4 197733041 197733370 -4594977 + AluSx SINE Alu 1 330 0 554 300 126 38 chr4 197733916 197734500 -4593847 - L1MEd LINE L1 -854 1244 98 2040 118 3 26 chr4 197734767 197735071 -4593276 + AluSx SINE Alu 1 297 -15 283 194 21 0 chr4 197735437 197735530 -4592817 + CT-rich Low_complexity Low_complexity 2 96 0 207 367 38 0 chr4 197736708 197736787 -4591560 + MIR SINE MIR 2 83 -179 210 284 157 16 chr4 197737411 197737560 -4590787 - MIR SINE MIR -54 208 40 227 256 32 112 chr4 197737703 197737828 -4590519 - L2 LINE L2 -244 3028 2914 2357 94 0 13 chr4 197737833 197738140 -4590207 - AluY SINE Alu -8 303 1 282 361 24 18 chr4 197738287 197738456 -4589891 - MER5B DNA MER1_type 0 178 9 712 230 144 14 chr4 197738485 197738763 -4589584 + MER5C DNA MER1_type 6 319 -5 1480 202 3 37 chr4 197739691 197740013 -4588334 + AluJo SINE Alu 1 311 -1 1804 150 4 11 chr4 197740202 197740475 -4587872 + AluJo SINE Alu 12 282 -30 5831 47 3 15 chr4 197740476 197740733 -4587614 + L1PA7 LINE L1 5418 5677 -477 2123 98 0 14 chr4 197740733 197741062 -4587285 + AluY SINE Alu 1 325 0 5831 47 3 15 chr4 197741062 197741541 -4586806 + L1PA7 LINE L1 5677 6146 -8 1936 66 25 0 chr4 197742580 197742845 -4585502 - AluY SINE Alu 0 305 35 255 300 12 62 chr4 197744410 197744570 -4583777 - MER58C DNA MER1_type -19 196 45 2563 263 20 38 chr4 197744902 197745931 -4582416 + L1M4 LINE L1 3379 4389 -1757 3562 26 3 0 chr4 197746090 197746478 -4581869 + SVA Other Other 996 1384 -2 225 0 0 0 chr4 197746489 197746514 -4581833 + (A)n Simple_repeat Simple_repeat 1 25 0 1855 156 0 32 chr4 197746563 197746871 -4581476 - AluJo SINE Alu -14 298 1 22 0 0 0 chr4 197747314 197747336 -4581011 + AT_rich Low_complexity Low_complexity 1 22 0 384 326 38 11 chr4 197748187 197748371 -4579976 + L2 LINE L2 2958 3146 -167 1840 204 173 53 chr4 197748473 197749090 -4579257 + LTR8 LTR ERV1 1 691 0 238 315 46 23 chr4 197749748 197749878 -4578469 + L2 LINE L2 2324 2456 -858 367 170 170 10 chr4 197749888 197749988 -4578359 + MER4C LTR ERV1 1 116 -349 507 185 265 7 chr4 197750162 197750313 -4578034 + MER4C LTR ERV1 276 465 0 486 317 57 18 chr4 197750332 197750559 -4577788 + MIR SINE MIR 26 261 -1 392 316 86 29 chr4 197750627 197750836 -4577511 + L2 LINE L2 2636 2856 -458 3436 127 80 0 chr4 197751343 197751856 -4576491 - MER41C LTR ERV1 0 554 1 182 281 31 0 chr4 197751856 197751920 -4576427 - L3 LINE CR1 -22 1555 1490 235 238 79 16 chr4 197753737 197753800 -4574547 - MIR3 SINE MIR -37 171 105 297 0 0 0 chr4 197753881 197753914 -4574433 + (TG)n Simple_repeat Simple_repeat 2 34 0 338 289 154 24 chr4 197754011 197754219 -4574128 - MIR SINE MIR 0 262 28 244 175 0 0 chr4 197755083 197755123 -4573224 - MER58 DNA MER1_type 0 2420 2381 27 0 0 0 chr4 197755581 197755608 -4572739 + AT_rich Low_complexity Low_complexity 1 27 0 1160 123 6 6 chr4 197755823 197755986 -4572361 + AluSq SINE Alu 1 163 -150 6089 150 3 7 chr4 197757124 197758493 -4569854 - L1PB1 LINE L1 -2 6865 5502 5319 192 186 8 chr4 197758494 197760039 -4568308 - L1PB1 LINE L1 -5038 1825 6 245 239 55 73 chr4 197760591 197760700 -4567647 + L1ME LINE L1 5498 5604 -517 228 276 46 23 chr4 197761229 197761316 -4567031 - L2 LINE L2 -1 3271 3183 350 312 106 25 chr4 197761383 197761620 -4566727 + MIR SINE MIR 2 257 -5 2341 87 3 0 chr4 197761662 197761960 -4566387 - AluSc SINE Alu -10 299 1 256 337 33 72 chr4 197762317 197762498 -4565849 - L2 LINE L2 -153 3119 2946 274 376 65 40 chr4 197762938 197763243 -4565104 - L2 LINE L2 -597 2717 2398 432 0 0 0 chr4 197763243 197763291 -4565056 + (TG)n Simple_repeat Simple_repeat 2 49 0 274 376 65 40 chr4 197763291 197763387 -4564960 - L2 LINE L2 -916 2398 2306 4417 45 2 0 chr4 197763423 197763938 -4564409 - L1PA4 LINE L1 0 6155 5640 729 201 12 35 chr4 197764306 197764475 -4563872 - MIR SINE MIR -39 223 59 2067 133 3 0 chr4 197764483 197764769 -4563578 - AluSx SINE Alu -25 287 1 453 264 24 30 chr4 197764997 197765164 -4563183 - HAL1 LINE L1 -359 2148 1983 1828 150 3 32 chr4 197765164 197765477 -4562870 - AluJb SINE Alu -3 309 6 184 300 0 0 chr4 197765578 197765618 -4562729 - L2 LINE L2 -19 3253 3214 250 333 33 11 chr4 197766368 197766458 -4561889 + MIR SINE MIR 79 170 -92 197 262 0 16 chr4 197766955 197767016 -4561331 + L3b LINE CR1 1132 1191 -392 2199 122 0 0 chr4 197767118 197767413 -4560934 - AluSg SINE Alu -15 295 1 257 280 119 46 chr4 197767509 197767709 -4560638 + MIR3 SINE MIR 2 212 -50 1214 213 11 72 chr4 197768883 197769230 -4559117 + MLT1A2 LTR MaLR 34 359 -15 2315 75 7 0 chr4 197769294 197769588 -4558759 - AluY SINE Alu -15 296 1 257 343 60 11 chr4 197769948 197770062 -4558285 - MIR SINE MIR -78 130 25 2336 88 0 0 chr4 197770435 197770730 -4557617 + AluSc SINE Alu 1 295 -14 365 0 22 0 chr4 197770781 197770826 -4557521 + (CA)n Simple_repeat Simple_repeat 1 46 0 502 218 218 6 chr4 197770835 197771005 -4557342 + MIR SINE MIR 56 261 -1 290 327 19 19 chr4 197772028 197772132 -4556215 + MIR SINE MIR 1 104 -158 471 33 33 0 chr4 197772302 197772362 -4555985 + MER101 LTR ERV1 410 471 -3 520 185 13 20 chr4 197772362 197772513 -4555834 + CT-rich Low_complexity Low_complexity 3 152 0 591 209 22 0 chr4 197776227 197776366 -4551981 - Charlie1 DNA MER1_type 0 2761 2620 * 760 248 61 0 chr4 197776347 197776545 -4551802 - Charlie1 DNA MER1_type -2519 242 33 245 270 0 0 chr4 197776684 197776747 -4551600 + MIR SINE MIR 92 154 -108 1253 29 0 0 chr4 197776755 197776895 -4551452 + L1PA4 LINE L1 6010 6149 -6 225 0 0 0 chr4 197777418 197777443 -4550904 + (TTA)n Simple_repeat Simple_repeat 3 27 0 4537 22 0 0 chr4 197777443 197777931 -4550416 - L1PA3 LINE L1 -18 6137 5650 404 314 76 23 chr4 197778061 197778325 -4550022 + HAL1 LINE L1 370 647 -1860 180 0 0 0 chr4 197778603 197778623 -4549724 + (TAGG)n Simple_repeat Simple_repeat 1 20 0 728 104 16 33 chr4 197778623 197778806 -4549541 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 661 281 50 20 chr4 197778831 197779030 -4549317 + MIR SINE MIR 28 232 -30 2484 39 0 0 chr4 197780354 197780667 -4547680 - AluY SINE Alu 0 313 1 2920 86 8 0 chr4 197782718 197783079 -4545268 + THE1B LTR MaLR 1 364 0 10415 104 15 59 chr4 197783081 197783604 -4544743 + THE1B-int LTR MaLR 2 547 -1033 2235 109 0 7 chr4 197783604 197783908 -4544439 + AluSg SINE Alu 1 302 -8 10415 104 15 59 chr4 197783908 197785034 -4543313 + THE1B-int LTR MaLR 547 1580 0 2688 124 0 6 chr4 197785036 197785400 -4542947 + THE1B LTR MaLR 3 364 0 196 282 65 81 chr4 197785874 197785998 -4542349 - L2 LINE L2 -10 3262 3141 199 262 0 0 chr4 197786101 197786143 -4542204 - L3b LINE CR1 -14 1569 1528 433 331 74 54 chr4 197786173 197786415 -4541932 - MIR SINE MIR -1 261 15 21 57 0 0 chr4 197786552 197786587 -4541760 + AT_rich Low_complexity Low_complexity 1 35 0 335 316 88 0 chr4 197787594 197787730 -4540617 + MIR SINE MIR 80 227 -35 208 364 64 27 chr4 197787830 197787940 -4540407 + L2 LINE L2 2953 3066 -206 706 266 27 43 chr4 197788280 197788536 -4539811 - MIR SINE MIR -10 252 1 2609 214 25 18 chr4 197788832 197789403 -4538944 + MER90 LTR ERV1 1 575 0 213 196 43 0 chr4 197789482 197789528 -4538819 + T-rich Low_complexity Low_complexity 5 52 0 198 216 0 0 chr4 197789533 197789570 -4538777 - MIR SINE MIR -222 40 4 2161 112 7 0 chr4 197890537 197890831 -4437516 - AluSx SINE Alu -16 296 1 505 66 0 0 chr4 197891702 197891783 -4436564 + L1PA10 LINE L1 6087 6167 0 213 39 0 0 chr4 197891790 197891816 -4436531 + (TA)n Simple_repeat Simple_repeat 1 26 0 230 344 39 7 chr4 197892501 197892655 -4435692 - MER5B DNA MER1_type -6 172 14 322 246 0 0 chr4 197892762 197892823 -4435524 + MER20 DNA MER1_type 1 61 -158 695 98 0 0 chr4 197892823 197892925 -4435422 - AluY SINE Alu -17 294 193 695 226 33 0 chr4 197893025 197893237 -4435110 - L1M4 LINE L1 -1610 4536 4319 28 29 0 0 chr4 197893366 197893401 -4434946 + AT_rich Low_complexity Low_complexity 1 35 0 2454 88 0 3 chr4 197893432 197893738 -4434609 - AluSc SINE Alu -4 305 1 258 105 0 0 chr4 197894362 197894400 -4433947 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1089 179 6 0 chr4 197894403 197894582 -4433765 - AluSq SINE Alu -48 265 86 2265 99 0 3 chr4 197894728 197895022 -4433325 - AluSg SINE Alu -17 293 1 453 240 113 65 chr4 197895051 197895280 -4433067 + MER110 LTR ERV1 252 491 0 704 226 164 15 chr4 197895423 197895618 -4432729 - MER58A DNA MER1_type 0 224 1 250 313 12 0 chr4 197895704 197895784 -4432563 + AluJ/FLAM SINE Alu 1 81 -221 304 225 38 12 chr4 197895899 197895979 -4432368 + Tigger3(Golem) DNA MER2_type 2849 2930 -99 240 200 0 33 chr4 197895979 197896039 -4432308 + Tigger3(Golem) DNA MER2_type 2873 2930 -99 324 210 37 25 chr4 197896047 197896128 -4432219 + Tigger3(Golem) DNA MER2_type 2849 2930 -99 296 159 0 32 chr4 197896125 197896188 -4432159 + Tigger3(Golem) DNA MER2_type 2870 2930 -99 * 609 182 54 47 chr4 197896197 197896345 -4432002 + Tigger3(Golem) DNA MER2_type 2849 2997 -32 698 179 33 7 chr4 197896393 197896544 -4431803 + MER106A DNA MER1_type 38 192 -44 415 202 32 11 chr4 197896543 197896637 -4431710 + LTR37B LTR ERV1 189 284 -184 * 2162 86 3 7 chr4 197896668 197896958 -4431389 - AluSg SINE Alu -21 289 1 2279 73 3 0 chr4 197896964 197897252 -4431095 - AluY SINE Alu 0 311 23 1021 178 17 0 chr4 197897412 197897592 -4430755 + AluJb SINE Alu 122 304 -8 2103 138 0 6 chr4 197897855 197898167 -4430180 + AluY SINE Alu 1 310 -1 1180 74 0 13 chr4 197898755 197898904 -4429443 + AluSq/x SINE Alu 1 147 -165 191 281 70 53 chr4 197899117 197899288 -4429059 - MIR SINE MIR -47 215 42 2458 80 0 0 chr4 197899648 197899947 -4428400 + AluY SINE Alu 1 299 -12 1969 119 3 53 chr4 197900126 197900446 -4427901 + AluSc SINE Alu 1 304 -5 2045 140 3 3 chr4 197900985 197901285 -4427062 + AluSc SINE Alu 1 300 -9 422 183 0 0 chr4 197901319 197901390 -4426957 + AluJ/FLAM SINE Alu 2 72 -240 556 210 19 44 chr4 197901491 197901655 -4426692 - MLT2B3 LTR ERVL -294 150 1 2005 105 54 14 chr4 197901762 197902056 -4426291 - AluSq SINE Alu -7 306 1 2217 104 7 7 chr4 197902924 197903221 -4425126 - AluSq SINE Alu -16 297 1 1076 115 6 30 chr4 197903909 197904074 -4424273 + AluSq SINE Alu 1 161 -152 5515 43 10 2 chr4 197904174 197905021 -4423326 + SVA Other Other 265 1442 0 321 285 133 7 chr4 197905158 197905309 -4423038 - MIR SINE MIR -56 206 37 486 0 0 0 chr4 197905500 197905554 -4422793 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 2277 90 0 3 chr4 197905997 197906297 -4422050 - AluSx SINE Alu -13 299 1 233 195 0 0 chr4 197906328 197906369 -4421978 - L2 LINE L2 -4 3309 3269 250 191 63 16 chr4 197906756 197906819 -4421528 - MER112 DNA MER1_type -107 153 88 2347 93 0 13 chr4 197907544 197907845 -4420502 + AluSq SINE Alu 1 297 -16 22 0 0 0 chr4 197908030 197908052 -4420295 + AT_rich Low_complexity Low_complexity 1 22 0 1411 167 8 20 chr4 197908254 197908505 -4419842 + AluJo SINE Alu 1 248 -64 1701 140 50 78 chr4 197908617 197908975 -4419372 + MER7A DNA MER2_type 1 346 0 4259 132 67 0 chr4 197909412 197909834 -4418513 + LTR62 LTR ERVK 1 486 -233 2505 73 0 0 chr4 197909834 197910137 -4418210 - AluY SINE Alu -8 303 1 4259 132 67 0 chr4 197910137 197910387 -4417960 + LTR62 LTR ERVK 486 718 -1 1507 201 4 7 chr4 197910663 197910791 -4417556 + AluJo SINE Alu 6 133 -179 2270 90 0 60 chr4 197910791 197911150 -4417197 + AluSq SINE Alu 1 313 0 1507 201 4 7 chr4 197911150 197911299 -4417048 + AluJo SINE Alu 133 282 -30 2174 92 7 3 chr4 197911484 197911776 -4416571 + AluSq SINE Alu 1 293 -20 2363 160 124 53 chr4 197911947 197912646 -4415701 + LTR1 LTR ERV1 12 760 -25 438 169 0 0 chr4 197912838 197912903 -4415444 - AluS SINE Alu -244 66 2 2155 139 7 0 chr4 197913078 197913388 -4414959 + AluSx SINE Alu 1 312 0 22 0 0 0 chr4 197913444 197913466 -4414881 + AT_rich Low_complexity Low_complexity 1 22 0 818 174 0 7 chr4 197913696 197913840 -4414507 + FLAM_C SINE Alu 1 143 0 2156 128 0 0 chr4 197913850 197914146 -4414201 + AluSx SINE Alu 1 296 -16 200 219 0 0 chr4 197914331 197914372 -4413975 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 369 291 19 38 chr4 197914496 197914654 -4413693 + L1MC/D LINE L1 5583 5737 -2071 435 19 0 0 chr4 197914721 197914773 -4413574 + (CA)n Simple_repeat Simple_repeat 1 52 0 1947 135 14 0 chr4 197914801 197915090 -4413257 + AluSx SINE Alu 1 293 -19 2175 121 10 0 chr4 197915606 197915911 -4412436 - AluSq SINE Alu -5 308 1 343 315 150 3 chr4 197916302 197916670 -4411677 - L2 LINE L2 -90 3223 2444 2440 68 7 0 chr4 197917556 197917851 -4410496 - AluY SINE Alu -14 297 1 1096 90 0 0 chr4 197917851 197917984 -4410363 - AluSg SINE Alu -177 133 1 27 73 0 0 chr4 197917997 197918052 -4410295 + AT_rich Low_complexity Low_complexity 1 55 0 2080 25 13 0 chr4 197918738 197918974 -4409373 + AluY SINE Alu 50 288 -23 576 84 0 0 chr4 197919392 197919475 -4408872 + (CA)n Simple_repeat Simple_repeat 2 84 0 233 93 23 0 chr4 197919865 197919894 -4408453 + (TCTCCC)n Simple_repeat Simple_repeat 6 38 -11 1906 123 0 4 chr4 197919894 197920154 -4408193 - AluSx SINE Alu -15 297 39 233 93 23 0 chr4 197920154 197920167 -4408180 + (TCTCCC)n Simple_repeat Simple_repeat 38 49 0 1624 156 10 27 chr4 197921407 197921702 -4406645 + AluJo SINE Alu 9 298 -14 3985 45 18 2 chr4 197921961 197922467 -4405880 - L1P LINE L1 -1424 4722 4209 597 259 63 26 chr4 197922475 197922664 -4405683 - MLT1D LTR MaLR -309 196 1 289 317 0 10 chr4 197922668 197922769 -4405578 + MIR SINE MIR 163 262 0 398 200 27 0 chr4 197922785 197922860 -4405487 + AluJo SINE Alu 118 194 -108 324 325 104 49 chr4 197922896 197923204 -4405143 + L1ME LINE L1 4723 5047 -1099 303 317 124 18 chr4 197923494 197923764 -4404583 + L1ME LINE L1 5405 5708 -413 2126 115 14 0 chr4 197923847 197924135 -4404212 + AluSx SINE Alu 1 292 -20 203 0 0 36 chr4 197924195 197924223 -4404124 + (TG)n Simple_repeat Simple_repeat 2 28 0 288 0 0 0 chr4 197924354 197924386 -4403961 + (TG)n Simple_repeat Simple_repeat 1 32 0 24 32 0 0 chr4 197924526 197924557 -4403790 + AT_rich Low_complexity Low_complexity 1 31 0 1654 133 0 61 chr4 197925009 197925303 -4403044 - AluSx SINE Alu -36 276 1 375 248 159 13 chr4 197925873 197926030 -4402317 - MER96B DNA MER1_type? -236 181 2 1752 58 31 4 chr4 197927144 197927370 -4400977 - AluSc SINE Alu -77 232 1 569 213 0 0 chr4 197927575 197927683 -4400664 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 3561 154 66 30 chr4 197927674 197927900 -4400447 + Tigger3(Golem) DNA MER2_type 2278 2494 -535 2198 116 3 0 chr4 197927900 197928203 -4400144 + AluSp SINE Alu 3 306 -7 3561 154 66 30 chr4 197928203 197928701 -4399646 + Tigger3(Golem) DNA MER2_type 2494 3028 -1 655 158 0 0 chr4 197928939 197929040 -4399307 - AluSg/x SINE Alu -45 265 165 914 130 7 0 chr4 197929137 197929275 -4399072 - AluJb SINE Alu -173 139 1 270 280 89 76 chr4 197929457 197929682 -4398665 - L2 LINE L2 -50 3222 2995 1060 188 20 10 chr4 197929867 197930069 -4398278 - MER46A DNA MER2_type 0 236 33 1570 145 0 4 chr4 197930174 197930402 -4397945 - AluJb SINE Alu -80 232 6 360 292 115 0 chr4 197930545 197930658 -4397689 - MER5A DNA MER1_type -24 165 40 2060 105 61 3 chr4 197931214 197931509 -4396838 - AluSx SINE Alu 0 312 1 38 0 0 0 chr4 197931930 197931968 -4396379 + AT_rich Low_complexity Low_complexity 1 38 0 715 111 4 2 chr4 197932506 197932759 -4395588 + AluSx SINE Alu 1 305 -7 2253 66 42 0 chr4 197933138 197933427 -4394920 + AluSp SINE Alu 1 301 -12 1991 85 0 4 chr4 197933448 197933694 -4394653 + AluSc SINE Alu 1 245 -64 2172 128 3 3 chr4 197934026 197934339 -4394008 + AluSq SINE Alu 1 313 0 2241 113 0 7 chr4 197934376 197934677 -4393670 + AluSx SINE Alu 1 299 -13 2088 111 61 25 chr4 197935524 197935886 -4392461 + THE1C LTR MaLR 1 375 0 2049 123 19 13 chr4 197936631 197936941 -4391406 + AluSx SINE Alu 1 312 0 252 281 88 52 chr4 197937175 197937367 -4390980 + L2 LINE L2 2174 2372 -942 865 272 176 49 chr4 197937824 197938806 -4389541 + L2 LINE L2 2179 3301 -12 1527 102 0 5 chr4 197938935 197939177 -4389170 - AluSq SINE Alu 0 328 88 1034 85 7 7 chr4 197939177 197939318 -4389029 - AluSq/x SINE Alu -171 141 1 451 290 59 9 chr4 197941072 197941413 -4386934 + L1MC/D LINE L1 4799 5156 -990 2392 72 7 0 chr4 197941415 197941706 -4386641 + AluSp SINE Alu 1 293 -20 36 53 0 0 chr4 197941706 197941763 -4386584 + AT_rich Low_complexity Low_complexity 1 57 0 591 246 89 0 chr4 197941865 197942056 -4386291 + L1MC/D LINE L1 5313 5520 -2288 186 338 14 0 chr4 197942234 197942305 -4386042 + L2 LINE L2 2985 3056 -216 205 261 108 0 chr4 197942580 197942645 -4385702 + MIR SINE MIR 175 246 -16 990 69 0 0 chr4 197942743 197942874 -4385473 - AluY SINE Alu -4 307 177 254 354 83 0 chr4 197943194 197943338 -4385009 + L2 LINE L2 3116 3271 -1 1435 151 15 27 chr4 197943967 197944226 -4384121 + AluJo SINE Alu 1 256 -56 672 270 11 0 chr4 197944494 197944672 -4383675 - MER3 DNA MER1_type 0 209 30 2362 98 0 13 chr4 197945134 197945450 -4382897 - AluSq SINE Alu -1 312 1 5710 29 0 3 chr4 197945528 197946151 -4382196 - SVA Other Other 0 1386 766 526 250 25 49 chr4 197946153 197946357 -4381990 - L1ME3 LINE L1 -6 6156 5958 1185 145 37 65 chr4 197946366 197946580 -4381767 - AluJb SINE Alu -104 208 1 988 261 62 6 chr4 197946580 197946905 -4381442 - L1ME3 LINE L1 -191 5971 5629 1939 134 0 10 chr4 197947183 197947468 -4380879 + AluSg SINE Alu 1 283 -22 944 109 23 0 chr4 197947468 197947643 -4380704 + (TA)n Simple_repeat Simple_repeat 2 180 0 1840 157 27 3 chr4 197947974 197948268 -4380079 + AluJo SINE Alu 1 301 -11 5183 43 3 5 chr4 197948268 197948889 -4379458 + L1PA5 LINE L1 5535 6154 0 240 35 0 0 chr4 197948896 197948925 -4379422 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 244 273 61 18 chr4 197949093 197949258 -4379089 + L1ME LINE L1 5198 5369 -777 399 260 171 27 chr4 197949309 197949567 -4378780 + L1ME LINE L1 5494 5788 -333 2178 90 40 0 chr4 197950135 197950436 -4377911 - AluSp SINE Alu 0 313 1 180 0 0 0 chr4 197950719 197950739 -4377608 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1816 154 10 3 chr4 197950742 197951041 -4377306 - AluSx SINE Alu -11 301 1 592 253 37 86 chr4 197951053 197951322 -4377025 + L2 LINE L2 2719 2974 -340 1583 144 0 4 chr4 197951524 197951753 -4376594 + AluSg SINE Alu 1 228 -82 778 161 45 32 chr4 197952291 197952446 -4375901 + FRAM SINE Alu 1 157 -9 4232 163 36 9 chr4 197952466 197953225 -4375122 - L1MB8 LINE L1 0 6178 5400 1690 161 39 7 chr4 197953311 197953597 -4374750 + AluJo SINE Alu 7 301 -11 230 293 113 0 chr4 197955153 197955259 -4373088 - L1MC/D LINE L1 -1914 5894 5777 2263 89 3 19 chr4 197955772 197956087 -4372260 + AluSg SINE Alu 1 310 0 282 248 92 57 chr4 197956536 197956677 -4371670 - L1MC/D LINE L1 -1946 5862 5717 429 333 37 23 chr4 197956702 197956918 -4371429 - MIR SINE MIR -13 249 31 2504 51 3 0 chr4 197956928 197957220 -4371127 + AluY SINE Alu 1 293 -18 217 132 0 0 chr4 197957806 197957844 -4370503 + (TA)n Simple_repeat Simple_repeat 2 39 0 2300 103 0 0 chr4 197957901 197958203 -4370144 + AluSc SINE Alu 1 302 -7 2685 36 0 0 chr4 197958336 197958641 -4369706 + AluY SINE Alu 1 305 -6 714 307 33 20 chr4 197958714 197959020 -4369327 - L2 LINE L2 -791 2523 2214 1748 99 8 8 chr4 197959069 197959311 -4369036 + AluSq SINE Alu 14 255 -58 545 256 83 12 chr4 197959683 197959851 -4368496 + MIR SINE MIR 43 222 -40 1971 123 13 10 chr4 197959928 197960289 -4368058 - AluSp SINE Alu 0 363 2 2064 134 3 3 chr4 197960613 197960790 -4367557 - AluSx SINE Alu -6 306 127 186 43 0 0 chr4 197960790 197960813 -4367534 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2064 134 3 3 chr4 197960813 197960940 -4367407 - AluSx SINE Alu -184 128 2 2150 107 10 0 chr4 197960944 197961235 -4367112 - AluSx SINE Alu -17 295 2 627 201 42 21 chr4 197961607 197961751 -4366596 - MER93b LTR ERV1 -2 371 225 514 206 69 0 chr4 197961757 197961859 -4366488 - MER93b LTR ERV1 -253 120 12 657 26 0 0 chr4 197961859 197961936 -4366411 - AluY SINE Alu -12 297 221 2169 117 0 10 chr4 197962173 197962480 -4365867 + AluSq SINE Alu 1 304 -9 2296 94 3 0 chr4 197962673 197962971 -4365376 + AluSx SINE Alu 1 299 -13 302 258 61 15 chr4 197963288 197963420 -4364927 + L1MC5 LINE L1 7648 7785 -176 1273 169 0 76 chr4 197963449 197963698 -4364649 + AluJb SINE Alu 2 231 -81 2085 85 4 4 chr4 197963821 197964092 -4364255 - AluSx SINE Alu -16 296 26 2303 105 0 3 chr4 197964672 197964977 -4363370 - AluSc SINE Alu -5 304 1 1664 227 77 0 chr4 197965182 197965613 -4362734 - L1MC3 LINE L1 -1 7784 7321 2116 77 49 3 chr4 197965613 197965898 -4362449 - AluSg SINE Alu -12 298 1 189 268 134 37 chr4 197966362 197966444 -4361903 - MER5A DNA MER1_type -22 167 78 342 273 104 0 chr4 197966564 197966718 -4361629 + L1MC3 LINE L1 7115 7284 -501 238 232 116 0 chr4 197966766 197966835 -4361512 + L2 LINE L2 2481 2557 -757 465 247 34 27 chr4 197966835 197966981 -4361366 - MER58A DNA MER1_type 0 147 1 2215 94 29 16 chr4 197967010 197967318 -4361029 - AluSx SINE Alu 0 312 1 205 245 20 0 chr4 197967400 197967449 -4360898 + L2 LINE L2 2572 2621 -693 3327 200 27 32 chr4 197967460 197968352 -4359995 - L1ME1 LINE L1 -83 6083 5197 1360 168 17 44 chr4 197968442 197968643 -4359704 + L1M4 LINE L1 4544 4736 -1410 2126 101 14 3 chr4 197968643 197968931 -4359416 + AluSg SINE Alu 1 291 -19 1360 168 17 44 chr4 197968931 197969026 -4359321 + L1M4 LINE L1 4736 4832 -1314 618 246 0 0 chr4 197969046 197969400 -4358947 + (CA)n Simple_repeat Simple_repeat 1 354 0 493 277 138 13 chr4 197969530 197969761 -4358586 + L2 LINE L2 3051 3310 -3 338 304 74 59 chr4 197969979 197970275 -4358072 - L1MC/D LINE L1 -2211 5597 5294 2406 86 3 0 chr4 197970275 197970578 -4357769 - AluSx SINE Alu -8 304 1 338 304 74 59 chr4 197970578 197970620 -4357727 - L1MC/D LINE L1 -2514 5294 5254 296 171 29 14 chr4 197971711 197971781 -4356566 + Charlie1 DNA MER1_type 2282 2352 -409 871 110 0 16 chr4 197971783 197971910 -4356437 - AluJb SINE Alu -30 282 158 377 154 70 98 chr4 197971916 197971970 -4356377 + Charlie1 DNA MER1_type 2401 2455 -306 2499 30 0 7 chr4 197971970 197972266 -4356081 - AluY SINE Alu -17 294 1 377 154 70 98 chr4 197972266 197972354 -4355993 + Charlie1 DNA MER1_type 2455 2539 -222 2048 97 28 3 chr4 197972939 197973227 -4355120 - AluSx SINE Alu -17 295 1 544 107 160 33 chr4 197973228 197973378 -4354969 + Charlie1 DNA MER1_type 2589 2757 -4 535 292 149 25 chr4 197973388 197973703 -4354644 - L1MC/D LINE L1 -2159 5649 5296 469 276 210 51 chr4 197973924 197974315 -4354032 + L2 LINE L2 1945 2397 -917 2860 10 0 6 chr4 197976760 197977074 -4351273 + AluYb8 SINE Alu 1 312 -6 742 190 0 0 chr4 197978223 197978365 -4349982 - L1MB7 LINE L1 -19 6165 6024 2064 114 24 0 chr4 197978365 197978655 -4349692 + AluSx SINE Alu 1 297 -15 452 154 0 49 chr4 197978655 197978778 -4349569 + GA-rich Low_complexity Low_complexity 1 117 0 547 178 28 0 chr4 197978778 197978885 -4349462 - L1MB7 LINE L1 -144 6040 5931 2329 121 0 0 chr4 197979133 197979440 -4348907 - AluSx SINE Alu -5 307 1 270 356 131 31 chr4 197979857 197980539 -4347808 - L2 LINE L2 -668 2646 1897 632 295 183 8 chr4 197980556 197980912 -4347435 - L2 LINE L2 -1000 2314 1897 799 247 151 17 chr4 197980923 197981174 -4347173 + L1MC4 LINE L1 7419 7823 -219 2266 108 3 0 chr4 197981273 197981578 -4346769 - AluSx SINE Alu -6 306 1 337 158 0 0 chr4 197981579 197981636 -4346711 - AluJ/FLAM SINE Alu -245 57 1 * 351 153 0 0 chr4 197981636 197981694 -4346653 - AluJ/FLAM SINE Alu -244 58 1 601 146 158 70 chr4 197982179 197982248 -4346099 + MER53 DNA DNA 1 63 -126 1724 99 4 4 chr4 197982248 197982481 -4345866 - AluSg SINE Alu -14 296 64 601 146 158 70 chr4 197982481 197982582 -4345765 + MER53 DNA DNA 63 186 -3 477 235 106 29 chr4 197982820 197982990 -4345357 - L2 LINE L2 -2811 503 321 5004 56 3 3 chr4 197983115 197983706 -4344641 - LTR10C LTR ERV1 0 591 1 1885 71 0 0 chr4 197984887 197985112 -4343235 + L1PA6 LINE L1 5919 6143 -11 29 0 0 0 chr4 197985112 197985141 -4343206 + AT_rich Low_complexity Low_complexity 1 29 0 228 217 57 57 chr4 197985152 197985258 -4343089 + L1MEd LINE L1 66 171 -5948 405 297 79 20 chr4 197985264 197985466 -4342881 - MER110 LTR ERV1 -113 378 165 21 0 0 0 chr4 197985662 197985683 -4342664 + AT_rich Low_complexity Low_complexity 1 21 0 470 185 222 9 chr4 197985686 197985794 -4342553 + FLAM_C SINE Alu 3 133 0 282 228 49 138 chr4 197985820 197985914 -4342433 + L1M4 LINE L1 2932 3033 -3113 1803 142 0 46 chr4 197985914 197986217 -4342130 + AluJo SINE Alu 1 289 -23 1863 159 0 0 chr4 197986224 197986513 -4341834 + AluJb SINE Alu 1 289 -23 282 228 49 138 chr4 197986513 197986735 -4341612 + L1M4 LINE L1 3039 3227 -2919 4862 175 25 16 chr4 197986902 197986943 -4341404 - L1MB3 LINE L1 -1 6182 6143 2339 76 3 36 chr4 197986943 197987247 -4341100 + AluSp SINE Alu 1 294 -19 4862 175 25 16 chr4 197987247 197988155 -4340192 - L1MB3 LINE L1 -40 6143 5228 303 239 91 114 chr4 197988156 197988264 -4340083 + L1M4 LINE L1 3524 3633 -2513 1178 237 7 101 chr4 197988264 197988702 -4339645 - MLT2C1 LTR ERVL 0 397 1 303 239 91 114 chr4 197988702 197988822 -4339525 + L1M4 LINE L1 3633 3748 -2398 2317 93 0 6 chr4 197988822 197989134 -4339213 + AluSx SINE Alu 1 310 -2 303 239 91 114 chr4 197989134 197989168 -4339179 + L1M4 LINE L1 3748 3781 -2365 2247 103 0 20 chr4 197989750 197990052 -4338295 + AluSg SINE Alu 1 296 -14 198 416 0 0 chr4 197991671 197991772 -4336575 + L3 LINE CR1 1463 1563 -14 24 0 0 0 chr4 197991798 197991822 -4336525 + AT_rich Low_complexity Low_complexity 1 24 0 2103 104 14 3 chr4 197992257 197992546 -4335801 - AluSc SINE Alu -17 292 1 418 284 153 16 chr4 197992546 197992729 -4335618 - MER46C DNA MER2_type -52 286 79 380 241 108 79 chr4 197992735 197992890 -4335457 + MIR SINE MIR 46 210 -52 1765 168 14 0 chr4 197992890 197993187 -4335160 + AluJb SINE Alu 1 301 -11 380 241 108 79 chr4 197993187 197993234 -4335113 + MIR SINE MIR 210 254 -8 1947 118 52 7 chr4 197993894 197994181 -4334166 - AluSc SINE Alu -5 304 5 186 43 0 0 chr4 197994192 197994215 -4334132 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 343 309 94 78 chr4 197994225 197994545 -4333802 + L2 LINE L2 2947 3271 -1 181 322 26 70 chr4 197994567 197994682 -4333665 + MIR SINE MIR 143 252 -10 3371 168 42 48 chr4 197994931 197995096 -4333251 + MER39 LTR ERV1 1 165 -542 2116 143 0 0 chr4 197995096 197995404 -4332943 + AluSx SINE Alu 1 308 -4 3371 168 42 48 chr4 197995404 197995945 -4332402 + MER39 LTR ERV1 165 703 -4 314 214 86 0 chr4 197996199 197996269 -4332078 + L1MC4 LINE L1 7211 7286 -756 628 108 0 0 chr4 197996427 197996510 -4331837 + L1P LINE L1 604 686 -5460 12613 47 5 0 chr4 197996511 197998766 -4329581 + L1PA5 LINE L1 3875 6153 -1 315 296 28 78 chr4 197998834 197999013 -4329334 + L2 LINE L2 2599 2768 -546 250 341 96 30 chr4 197999238 197999405 -4328942 - MIR SINE MIR -68 194 17 386 283 0 91 chr4 198000403 198000537 -4327810 - MER5B DNA MER1_type -2 176 31 2421 94 0 0 chr4 198000537 198000844 -4327503 - AluSx SINE Alu -5 307 1 342 118 0 6 chr4 198000797 198000853 -4327494 - Alu SINE Alu -256 47 1 * 386 283 0 91 chr4 198000853 198000896 -4327451 - MER5B DNA MER1_type -156 22 7 1756 156 3 33 chr4 198001201 198001503 -4326844 + AluJo SINE Alu 1 293 -19 2271 99 16 3 chr4 198001791 198002094 -4326253 + AluSq SINE Alu 1 307 -6 1753 93 0 13 chr4 198003468 198003740 -4324607 + AluSg1 SINE Alu 48 316 0 290 306 215 43 chr4 198004054 198004426 -4323921 + L2 LINE L2 2045 2480 -834 297 355 36 14 chr4 198004490 198004628 -4323719 + L1MEd LINE L1 496 636 -5483 1966 112 45 0 chr4 198004634 198004921 -4323426 + AluSx SINE Alu 1 300 -12 4450 216 81 55 chr4 198004925 198005065 -4323282 + L1MD3 LINE L1 3879 4014 -2132 1972 134 40 0 chr4 198005065 198005363 -4322984 + AluSg SINE Alu 1 310 0 4450 216 81 55 chr4 198005363 198007150 -4321197 + L1MD3 LINE L1 4014 5403 -743 1443 118 0 78 chr4 198007251 198007496 -4320851 + AluSq SINE Alu 76 301 -12 1294 191 4 12 chr4 198007721 198007977 -4320370 - L1MD3 LINE L1 -12 7983 7730 190 227 239 34 chr4 198008934 198009022 -4319325 + L2 LINE L2 2929 3034 -279 1171 173 85 44 chr4 198010381 198010556 -4317791 + MER58B DNA MER1_type 59 250 -2170 1983 113 13 23 chr4 198010556 198010856 -4317491 - AluSg SINE Alu -13 297 1 1171 173 85 44 chr4 198010856 198010952 -4317395 + MER58B DNA MER1_type 250 341 0 578 325 183 29 chr4 198011023 198011551 -4316796 + L2 LINE L2 113 558 -2756 2203 105 20 3 chr4 198011551 198011856 -4316491 - AluSx SINE Alu 0 312 3 578 325 183 29 chr4 198011856 198012151 -4316196 + L2 LINE L2 558 1063 -2251 246 215 51 51 chr4 198012152 198012231 -4316116 - MER46C DNA MER2_type -3 335 257 558 201 54 54 chr4 198012259 198012408 -4315939 - MER46C DNA MER2_type -189 149 1 450 288 129 0 chr4 198012409 198012579 -4315768 + L2 LINE L2 1062 1253 -2061 581 210 45 45 chr4 198012698 198012840 -4315507 + MER20B DNA MER1_type 608 752 -31 2524 71 3 0 chr4 198012840 198013151 -4315196 + AluSp SINE Alu 1 312 -1 581 210 45 45 chr4 198013151 198013184 -4315163 + MER20B DNA MER1_type 751 783 0 416 275 92 112 chr4 198013225 198014144 -4314203 + L2 LINE L2 1353 2253 -1061 705 340 47 17 chr4 198014716 198015060 -4313287 + L2 LINE L2 2960 3313 0 832 114 0 8 chr4 198015264 198015387 -4312960 - LOR1a LTR ERV1 -375 122 1 1090 141 18 0 chr4 198015466 198015629 -4312718 - AluSx SINE Alu -146 166 1 1796 207 12 11 chr4 198016691 198017025 -4311322 - MLT1B LTR MaLR -17 373 54 880 160 0 0 chr4 198017025 198017156 -4311191 - FLAM_C SINE Alu -1 132 2 1796 207 12 11 chr4 198017156 198017211 -4311136 - MLT1B LTR MaLR -336 54 1 397 228 40 10 chr4 198017734 198017835 -4310512 + LTR25 LTR ERV1 260 363 -431 345 230 0 80 chr4 198017832 198017932 -4310415 + MER61E LTR ERV1 99 190 -379 * 975 174 27 16 chr4 198018011 198018195 -4310152 + MER61E LTR ERV1 341 526 -43 1145 138 6 0 chr4 198018296 198018463 -4309884 - AluJb SINE Alu -15 297 130 1912 104 31 7 chr4 198018473 198018762 -4309585 - L1PA13 LINE L1 -4 6159 5864 1630 181 92 43 chr4 198018962 198019355 -4308992 - MLT1C LTR MaLR -55 412 1 2287 100 0 3 chr4 198019916 198020215 -4308132 + AluSx SINE Alu 1 298 -14 539 282 28 61 chr4 198020331 198020588 -4307759 + L2 LINE L2 2741 2991 -322 1273 65 0 0 chr4 198020901 198021055 -4307292 - AluSg/x SINE Alu -11 299 146 14951 178 61 9 chr4 198021088 198024043 -4304304 + L1PB1 LINE L1 7 2805 -4062 2110 128 17 0 chr4 198024043 198024340 -4304007 + AluSx SINE Alu 1 302 -10 14951 178 61 9 chr4 198024340 198025261 -4303086 + L1PB1 LINE L1 2805 3676 -3191 2143 125 0 0 chr4 198025261 198025556 -4302791 + AluY SINE Alu 1 295 -16 14951 178 61 9 chr4 198025556 198027946 -4300401 + L1PB1 LINE L1 3676 6603 -264 207 231 115 0 chr4 198030334 198030386 -4297961 + L2 LINE L2 3251 3308 -5 2472 50 3 0 chr4 198030980 198031278 -4297069 - AluSp SINE Alu -14 299 1 199 146 36 18 chr4 198031401 198031456 -4296891 + GA-rich Low_complexity Low_complexity 1 56 0 511 316 41 54 chr4 198031736 198031971 -4296376 + L2 LINE L2 2827 3058 -255 1802 214 15 3 chr4 198031971 198032308 -4296039 + MER58B DNA MER1_type 1 341 0 511 316 41 54 chr4 198032308 198032388 -4295959 + L2 LINE L2 3058 3138 -175 1588 251 65 53 chr4 198032467 198032775 -4295572 - L1ME3A LINE L1 -105 6065 5745 2098 129 0 7 chr4 198032775 198033077 -4295270 - AluSg SINE Alu -10 300 1 1588 251 65 53 chr4 198033077 198033366 -4294981 - L1ME3A LINE L1 -425 5745 5461 200 295 0 33 chr4 198033369 198033430 -4294917 + L2 LINE L2 3180 3238 -75 813 133 28 99 chr4 198033665 198033846 -4294501 - MER20B DNA MER1_type 0 219 52 472 81 0 0 chr4 198033847 198033909 -4294438 + Alu SINE Alu 2 63 -247 745 152 86 33 chr4 198034590 198034741 -4293606 + MER58B DNA MER1_type 181 339 -2 188 281 35 0 chr4 198034742 198034799 -4293548 + L2 LINE L2 3254 3312 -1 2330 102 0 0 chr4 198034925 198035229 -4293118 + AluSg SINE Alu 1 304 -6 455 277 120 51 chr4 198035233 198035507 -4292840 + L2 LINE L2 2987 3279 -34 1668 149 0 123 chr4 198037195 198037347 -4291000 + AluJo SINE Alu 2 90 -212 2215 110 3 0 chr4 198037347 198037648 -4290699 - AluSx SINE Alu -10 302 1 1668 149 0 123 chr4 198037648 198037837 -4290510 + AluJo SINE Alu 90 301 -1 1003 182 95 118 chr4 198038273 198038620 -4289727 - MLT1B LTR MaLR 0 390 52 2124 112 0 3 chr4 198040386 198040681 -4287666 + AluSx SINE Alu 1 294 -18 1248 215 98 65 chr4 198040684 198040739 -4287608 - L1MA9 LINE L1 -63 6249 6197 2593 58 0 0 chr4 198040739 198041049 -4287298 + AluY SINE Alu 1 310 -1 1248 215 98 65 chr4 198041049 198041504 -4286843 - L1MA9 LINE L1 -115 6197 5722 736 247 93 118 chr4 198041645 198041932 -4286415 + MLT1H LTR MaLR 36 306 -243 2085 114 23 7 chr4 198041932 198042239 -4286108 + AluSx SINE Alu 1 312 0 736 247 93 118 chr4 198042239 198042477 -4285870 + MLT1H LTR MaLR 306 548 -1 1836 145 3 17 chr4 198042594 198042730 -4285617 + AluSx SINE Alu 1 137 -175 2237 104 0 0 chr4 198042730 198043029 -4285318 + AluSg SINE Alu 1 299 -11 1836 145 3 17 chr4 198043029 198043182 -4285165 + AluSx SINE Alu 137 286 -26 2146 98 10 7 chr4 198044504 198044799 -4283548 + AluSp SINE Alu 5 300 -13 2083 117 3 3 chr4 198045193 198045492 -4282855 + AluSx SINE Alu 1 299 -13 2072 126 7 0 chr4 198046575 198046869 -4281478 - AluSx SINE Alu -16 296 1 32 0 0 0 chr4 198046987 198047019 -4281328 + AT_rich Low_complexity Low_complexity 1 32 0 247 268 16 65 chr4 198047040 198047163 -4281184 + L1M4 LINE L1 2927 3043 -3103 311 247 62 0 chr4 198047203 198047284 -4281063 - L1MC5 LINE L1 -868 7093 7008 21 36 0 0 chr4 198048061 198048089 -4280258 + AT_rich Low_complexity Low_complexity 1 28 0 309 26 0 0 chr4 198048107 198048145 -4280202 + (TG)n Simple_repeat Simple_repeat 1 38 0 341 215 49 76 chr4 198048366 198048427 -4279920 - L1MC4 LINE L1 0 8042 7981 1692 185 88 14 chr4 198048427 198048790 -4279557 + MLT1B LTR MaLR 1 390 0 341 215 49 76 chr4 198048790 198048872 -4279475 - L1MC4 LINE L1 -61 7981 7903 236 231 77 19 chr4 198048873 198048977 -4279370 + (CATATA)n Simple_repeat Simple_repeat 4 113 0 407 262 37 42 chr4 198049010 198049201 -4279146 - L1MC4 LINE L1 -150 7892 7703 1817 168 0 10 chr4 198049285 198049583 -4278764 - AluJo SINE Alu -17 295 1 523 62 0 62 chr4 198049600 198049630 -4278717 + MADE1 DNA Mariner 6 36 -44 2109 121 3 0 chr4 198049630 198049927 -4278420 - AluSc SINE Alu -11 298 1 523 62 0 62 chr4 198049927 198049976 -4278371 + MADE1 DNA Mariner 36 80 0 320 281 58 0 chr4 198049976 198050097 -4278250 - L1MC4 LINE L1 -1017 7025 6898 263 287 86 48 chr4 198050168 198050377 -4277970 - L1MC5 LINE L1 -477 7484 7268 269 315 130 25 chr4 198050747 198051023 -4277324 + L1MC4a LINE L1 5604 5908 -1900 899 111 0 8 chr4 198051352 198051478 -4276869 + AluSq/x SINE Alu 1 125 -188 2598 40 0 0 chr4 198052502 198052806 -4275541 + AluY SINE Alu 1 304 -7 543 234 45 89 chr4 198052806 198053097 -4275250 + MLT1G LTR MaLR 20 297 -293 340 236 66 28 chr4 198053210 198053316 -4275031 + MLT1G LTR MaLR 439 548 -7 285 313 0 0 chr4 198053362 198053458 -4274889 + (TA)n Simple_repeat Simple_repeat 1 96 0 1623 158 59 4 chr4 198053722 198053994 -4274353 + AluJo SINE Alu 1 287 -25 385 317 93 69 chr4 198054612 198054902 -4273445 - L2 LINE L2 -510 2804 2508 3248 199 71 22 chr4 198054958 198055815 -4272532 + L1MB7 LINE L1 5286 6184 0 533 273 93 0 chr4 198055918 198056079 -4272268 + MIR SINE MIR 17 192 -70 1603 174 14 11 chr4 198056279 198056566 -4271781 + AluJo SINE Alu 1 288 -24 2462 72 7 0 chr4 198056572 198056876 -4271471 + AluSg SINE Alu 5 310 0 182 36 0 36 chr4 198056876 198056904 -4271443 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 295 323 8 77 chr4 198058223 198058353 -4269994 + L2 LINE L2 3149 3269 -3 321 226 12 12 chr4 198058579 198058650 -4269697 - L1ME LINE L1 -404 5766 5693 1502 220 6 13 chr4 198058650 198058963 -4269384 - AluJo SINE Alu -1 311 1 321 226 12 12 chr4 198058963 198058975 -4269372 - L1ME LINE L1 -476 5694 5683 855 182 15 30 chr4 198059099 198059297 -4269050 + Charlie1a DNA MER1_type 93 287 -1168 22 35 0 0 chr4 198059303 198059332 -4269015 + AT_rich Low_complexity Low_complexity 1 29 0 1813 225 35 65 chr4 198059332 198059963 -4268384 + Charlie1a DNA MER1_type 267 878 -577 2223 107 0 3 chr4 198059967 198060258 -4268089 + AluSc SINE Alu 1 290 -19 755 155 167 0 chr4 198060264 198060432 -4267915 + Charlie1a DNA MER1_type 968 1163 -292 24 67 0 0 chr4 198060567 198060612 -4267735 + AT_rich Low_complexity Low_complexity 1 45 0 854 150 94 6 chr4 198060856 198061016 -4267331 - AluSc SINE Alu -8 301 128 2005 111 45 0 chr4 198061257 198061545 -4266802 + AluSp SINE Alu 1 301 -12 1142 176 30 4 chr4 198061545 198061807 -4266540 - L1MC4 LINE L1 -441 7601 7333 27 49 0 0 chr4 198062391 198062432 -4265915 + AT_rich Low_complexity Low_complexity 1 41 0 987 231 30 30 chr4 198062832 198063161 -4265186 + L1MEc LINE L1 1971 2299 -4097 * 1011 224 75 0 chr4 198063160 198063414 -4264933 + L1MCa LINE L1 20 292 -6134 296 186 17 0 chr4 198063416 198063475 -4264872 + L1MCa LINE L1 233 292 -6134 292 214 14 14 chr4 198063477 198063547 -4264800 + L1MCa LINE L1 233 302 -6124 258 258 15 0 chr4 198063538 198063604 -4264743 + L1MCa LINE L1 233 299 -6127 * 255 220 17 0 chr4 198063599 198063658 -4264689 + L1MCa LINE L1 233 292 -6134 * 2634 234 42 28 chr4 198063660 198063849 -4264498 + L1MCa LINE L1 233 418 -6008 1347 240 67 0 chr4 198063849 198064191 -4264156 - MLT1A1 LTR MaLR 0 365 1 2634 234 42 28 chr4 198064191 198064601 -4263746 + L1MCa LINE L1 418 821 -5605 2447 75 3 13 chr4 198064601 198064907 -4263440 + AluSg SINE Alu 1 303 -7 2634 234 42 28 chr4 198064907 198065805 -4262542 + L1MCa LINE L1 821 3309 -3117 183 42 0 0 chr4 198065854 198065878 -4262469 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2035 114 4 7 chr4 198065880 198066161 -4262186 - AluSx SINE Alu -32 280 1 209 241 64 106 chr4 198068131 198068272 -4260075 + MIR SINE MIR 106 240 -22 188 240 0 80 chr4 198068369 198068419 -4259928 - L2 LINE L2 -88 3225 3180 345 24 0 0 chr4 198069178 198069220 -4259127 + (CA)n Simple_repeat Simple_repeat 1 42 0 95 49 0 0 chr4 198069597 198069741 -4258606 + AT_rich Low_complexity Low_complexity 1 144 0 271 194 65 7 chr4 198069767 198069906 -4258441 + (TA)n Simple_repeat Simple_repeat 2 148 0 2251 117 6 17 chr4 198069994 198070354 -4257993 - L1PA14 LINE L1 -1 6160 5805 30 27 0 0 chr4 198070406 198070443 -4257904 + AT_rich Low_complexity Low_complexity 1 37 0 329 290 31 10 chr4 198070553 198070746 -4257601 + HAL1 LINE L1 101 297 -2210 471 285 215 17 chr4 198070911 198071199 -4257148 + HAL1 LINE L1 510 854 -1653 2175 120 0 16 chr4 198071701 198072010 -4256337 - AluSx SINE Alu -8 304 1 4339 70 9 14 chr4 198072928 198073485 -4254862 - SVA Other Other -1 1385 832 355 184 195 0 chr4 198073770 198073857 -4254490 + MER5A DNA MER1_type 9 112 -77 2514 63 0 0 chr4 198076038 198076339 -4252008 - AluY SINE Alu -10 301 1 2268 105 0 49 chr4 198077438 198077763 -4250584 + AluSg SINE Alu 2 310 0 2359 107 0 0 chr4 198078558 198078866 -4249481 + AluSx SINE Alu 5 312 0 30 59 0 0 chr4 198079068 198079119 -4249228 + AT_rich Low_complexity Low_complexity 1 51 0 1376 221 49 19 chr4 198079895 198080321 -4248026 - L1M4 LINE L1 -3423 2723 2285 2059 124 7 0 chr4 198080657 198080948 -4247399 + AluSx SINE Alu 1 293 -19 1678 175 36 7 chr4 198081665 198081968 -4246379 - AluJo SINE Alu 0 312 1 987 194 0 2 chr4 198082946 198083209 -4245138 - AluJb SINE Alu -5 307 1 428 254 9 9 chr4 198183710 198183824 -4144523 + AluY SINE Alu 175 288 -23 190 295 77 13 chr4 198184224 198184302 -4144045 + MIR SINE MIR 86 168 -94 1096 65 0 22 chr4 198184325 198184464 -4143883 - AluSq/x SINE Alu -177 136 1 21 36 0 0 chr4 198184464 198184492 -4143855 + AT_rich Low_complexity Low_complexity 1 28 0 2392 74 3 3 chr4 198184939 198185249 -4143098 + AluSg SINE Alu 1 310 0 289 381 23 23 chr4 198186223 198186399 -4141948 + MIR SINE MIR 12 187 -75 535 115 0 0 chr4 198187468 198187546 -4140801 + AluS SINE Alu 1 78 -234 297 247 0 34 chr4 198187697 198187786 -4140561 + L1ME1 LINE L1 1677 1762 -4634 370 269 52 0 chr4 198187866 198188000 -4140347 + L1ME1 LINE L1 2409 2549 -3666 1171 204 8 34 chr4 198188000 198188197 -4140150 - Tigger3(Golem) DNA MER2_type 0 3038 2848 1321 111 106 0 chr4 198188197 198188405 -4139942 - MER30 DNA MER1_type 0 230 1 1171 204 8 34 chr4 198188405 198188472 -4139875 - Tigger3(Golem) DNA MER2_type -190 2848 2781 567 241 22 0 chr4 198188473 198188610 -4139737 - Tigger3(Golem) DNA MER2_type -2889 140 1 903 282 55 42 chr4 198188821 198189155 -4139192 + L1ME1 LINE L1 2751 3079 -3136 2328 84 0 10 chr4 198189155 198189465 -4138882 + AluY SINE Alu 3 309 -2 903 282 55 42 chr4 198189465 198189977 -4138370 + L1ME1 LINE L1 3079 3608 -2607 441 281 80 34 chr4 198190075 198190255 -4138092 + L1M4 LINE L1 4794 4991 -1155 234 0 0 0 chr4 198190255 198190281 -4138066 + (CA)n Simple_repeat Simple_repeat 1 26 0 441 281 80 34 chr4 198190281 198190363 -4137984 + L1M4 LINE L1 4991 5068 -1078 192 152 0 0 chr4 198190476 198190509 -4137838 + A-rich Low_complexity Low_complexity 3 35 0 2254 95 10 3 chr4 198190515 198190811 -4137536 + AluSg SINE Alu 1 298 -12 1535 157 37 114 chr4 198191318 198191695 -4136652 + MER7A DNA MER2_type 1 346 0 1046 257 48 38 chr4 198191893 198192368 -4135979 + L1ME1 LINE L1 4726 5205 -1010 1892 247 30 62 chr4 198192491 198193293 -4135054 + L1ME1 LINE L1 5379 6154 -81 1289 201 56 51 chr4 198193321 198193749 -4134598 - MLT1C LTR MaLR -33 434 5 185 331 155 14 chr4 198195685 198195833 -4132514 - MIR SINE MIR -69 193 25 803 134 15 15 chr4 198196122 198196256 -4132091 - AluJb SINE Alu -178 134 1 370 314 52 66 chr4 198196435 198196706 -4131641 + Charlie8 DNA MER1_type 1 267 -2150 302 223 0 9 chr4 198197706 198197818 -4130529 + CT-rich Low_complexity Low_complexity 1 111 0 193 107 0 0 chr4 198198508 198198536 -4129811 + MER5A DNA MER1_type 30 57 -132 5609 107 52 4 chr4 198199774 198200043 -4128304 - L1PA14 LINE L1 0 6161 5906 2252 93 0 27 chr4 198200043 198200344 -4128003 - AluSx SINE Alu -17 295 3 5609 107 52 4 chr4 198200344 198201797 -4126550 - L1PA14 LINE L1 -255 5906 4390 396 0 0 0 chr4 198201797 198201841 -4126506 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 5609 107 52 4 chr4 198201841 198201932 -4126415 - L1PA14 LINE L1 -1771 4390 4305 293 80 0 0 chr4 198202188 198202238 -4126109 - Alu SINE Alu -2 306 257 1036 119 12 0 chr4 198202345 198202513 -4125834 - AluY SINE Alu -7 304 135 196 259 35 121 chr4 198202923 198202965 -4125382 + L2 LINE L2 3176 3220 -93 2199 106 0 3 chr4 198202965 198203279 -4125068 - AluSg SINE Alu 0 313 1 196 259 35 121 chr4 198203279 198203350 -4124997 + L2 LINE L2 3220 3281 -32 1857 156 21 6 chr4 198203375 198203714 -4124633 - MER2 DNA MER2_type 0 344 1 369 234 37 37 chr4 198203718 198203825 -4124522 - MIR SINE MIR -151 111 5 237 271 21 21 chr4 198204028 198204124 -4124223 + (TATATG)n Simple_repeat Simple_repeat 3 98 0 441 190 0 0 chr4 198204154 198204254 -4124093 + (CA)n Simple_repeat Simple_repeat 2 101 0 4875 151 84 22 chr4 198204257 198204464 -4123883 + Tigger3b DNA MER2_type 3 196 -2832 2162 127 0 0 chr4 198204464 198204756 -4123591 + AluSx SINE Alu 3 294 -18 4875 151 84 22 chr4 198204756 198205722 -4122625 + Tigger3b DNA MER2_type 196 1230 -1 663 197 106 0 chr4 198205790 198205922 -4122425 - MLT2B1 LTR ERVL -46 469 324 733 181 23 8 chr4 198205933 198206066 -4122281 + FLAM_C SINE Alu 1 135 -8 1509 204 11 11 chr4 198206067 198206347 -4122000 - MLT2B1 LTR ERVL -240 280 1 1676 125 0 12 chr4 198207480 198207728 -4120619 - AluSg/x SINE Alu 0 312 68 2140 117 0 3 chr4 198207965 198208256 -4120091 + AluSc SINE Alu 1 290 -19 651 387 81 5 chr4 198208266 198208687 -4119660 + L2 LINE L2 2431 2883 -431 774 310 128 3 chr4 198208758 198209215 -4119132 + L2 LINE L2 2552 3060 -253 2166 131 0 0 chr4 198209274 198209580 -4118767 + AluSx SINE Alu 1 306 -6 978 228 18 81 chr4 198209583 198209785 -4118562 - L1MB7 LINE L1 -15 6169 5995 2635 170 40 11 chr4 198209785 198210233 -4118114 + LOR1b LTR ERV1 1 461 0 978 228 18 81 chr4 198210233 198210363 -4117984 - L1MB7 LINE L1 -189 5995 5858 405 317 81 27 chr4 198210711 198210932 -4117415 + L2 LINE L2 3081 3313 0 36 0 0 0 chr4 198211563 198211599 -4116748 + AT_rich Low_complexity Low_complexity 1 36 0 1903 226 113 31 chr4 198213163 198213685 -4114662 - MLT1E2 LTR MaLR 0 626 62 2258 82 7 0 chr4 198214659 198214951 -4113396 - AluSp SINE Alu -19 294 1 185 235 12 118 chr4 198215237 198215322 -4113025 - L2 LINE L2 -3021 293 218 282 277 30 10 chr4 198222008 198222109 -4106238 - L1MC4 LINE L1 -1324 6718 6616 267 270 11 22 chr4 198222111 198222200 -4106147 + (TA)n Simple_repeat Simple_repeat 1 88 0 182 418 64 0 chr4 198224141 198224282 -4104065 + L3 LINE CR1 1424 1573 -4 216 263 156 45 chr4 198225212 198225391 -4102956 + L2 LINE L2 2685 2883 -431 2215 121 0 0 chr4 198225418 198225724 -4102623 - AluSq SINE Alu -7 306 1 213 167 0 0 chr4 198225972 198226008 -4102339 + L2 LINE L2 3237 3272 0 474 33 0 0 chr4 198226119 198226179 -4102168 + (CA)n Simple_repeat Simple_repeat 1 60 0 182 333 118 0 chr4 198226211 198226313 -4102034 + L2 LINE L2 154 267 -3047 1204 218 17 10 chr4 198226481 198226776 -4101571 - MSTD LTR MaLR 0 396 1 2423 73 0 0 chr4 198227516 198227817 -4100530 + AluY SINE Alu 1 301 -10 250 310 178 16 chr4 198228059 198228188 -4100159 - L2 LINE L2 0 3313 3164 856 235 85 123 chr4 198228760 198229377 -4098970 - LTR36 LTR ERV1 0 611 17 2418 81 10 0 chr4 198229377 198229687 -4098660 + AluSq SINE Alu 1 313 0 856 235 85 123 chr4 198229687 198229704 -4098643 - LTR36 LTR ERV1 -594 17 1 239 263 62 0 chr4 198229709 198229789 -4098558 - Charlie8 DNA MER1_type -2268 149 65 2235 106 0 0 chr4 198230302 198230604 -4097743 + AluY SINE Alu 1 302 -9 2819 109 75 53 chr4 198231746 198232214 -4096133 + LTR12 LTR ERV1 1 478 -236 198 278 22 44 chr4 198232214 198232304 -4096043 + MIR SINE MIR 1 88 -174 1863 135 0 53 chr4 198232338 198232642 -4095705 - AluSx SINE Alu -24 288 1 7681 227 51 12 chr4 198232689 198234750 -4093597 + L1MB3 LINE L1 3149 5331 -852 207 0 0 0 chr4 198234750 198234773 -4093574 + (CA)n Simple_repeat Simple_repeat 1 23 0 7681 227 51 12 chr4 198234773 198235385 -4092962 + L1MB3 LINE L1 5331 5917 -266 2515 184 24 7 chr4 198235385 198235836 -4092511 + LOR1b LTR ERV1 1 459 -2 1062 147 42 102 chr4 198235838 198236071 -4092276 + L1MB3 LINE L1 5914 6159 -24 1970 95 20 56 chr4 198236071 198236376 -4091971 - AluSg SINE Alu -16 294 1 1790 118 0 0 chr4 198236383 198236621 -4091726 - AluSx SINE Alu -14 298 61 1062 147 42 102 chr4 198236621 198236664 -4091683 + L1MB3 LINE L1 6165 6181 -2 223 297 65 77 chr4 198237709 198237864 -4090483 + MIR SINE MIR 2 154 -108 461 270 176 0 chr4 198237934 198238093 -4090254 + MIR SINE MIR 71 257 -5 22 0 0 0 chr4 198238132 198238154 -4090193 + AT_rich Low_complexity Low_complexity 1 22 0 327 104 0 0 chr4 198238802 198238850 -4089497 + (TGGA)n Simple_repeat Simple_repeat 2 49 0 2527 54 0 0 chr4 198240240 198240537 -4087810 - AluY SINE Alu -14 297 1 241 268 170 85 chr4 198240853 198240973 -4087374 + MIR SINE MIR 41 181 -81 2263 46 3 3 chr4 198240973 198241285 -4087062 + AluY SINE Alu 1 312 0 241 268 170 85 chr4 198241285 198241314 -4087033 + MIR SINE MIR 181 206 -56 33 56 0 0 chr4 198241765 198241819 -4086528 + AT_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr4 198242444 198242473 -4085874 + AT_rich Low_complexity Low_complexity 1 29 0 1617 133 106 8 chr4 198242984 198243150 -4085197 - AluJo SINE Alu -18 294 91 261 0 0 0 chr4 198243150 198243179 -4085168 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1617 133 106 8 chr4 198243179 198243276 -4085071 - AluJo SINE Alu -221 91 5 2200 107 3 16 chr4 198243290 198243600 -4084747 - AluSx SINE Alu -6 306 1 1962 112 65 0 chr4 198243783 198244060 -4084287 + AluSx SINE Alu 1 295 -17 3296 66 5 7 chr4 198244133 198244543 -4083804 - L1PA7 LINE L1 0 6154 5746 2012 128 0 7 chr4 198246644 198246942 -4081405 - AluSg1 SINE Alu -13 296 1 2255 74 3 3 chr4 198247965 198248249 -4080098 - AluY SINE Alu -27 284 1 23 33 0 0 chr4 198248478 198248508 -4079839 + AT_rich Low_complexity Low_complexity 1 30 0 288 120 0 0 chr4 198249588 198249638 -4078709 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 7278 54 6 7 chr4 198249638 198250724 -4077623 - L1PA6 LINE L1 -24 6130 5045 2667 23 0 10 chr4 198250724 198251030 -4077317 - AluY SINE Alu -8 303 1 7278 54 6 7 chr4 198251030 198251359 -4076988 - L1PA6 LINE L1 -1109 5045 4717 1825 205 52 0 chr4 198252773 198253120 -4075227 + MSTD LTR MaLR 32 396 0 1141 149 0 23 chr4 198253706 198253916 -4074431 - AluSg/x SINE Alu 0 317 112 413 146 0 0 chr4 198253919 198253974 -4074373 - AluS SINE Alu -252 57 3 2914 163 4 9 chr4 198254083 198254096 -4074251 - L1P LINE L1 -949 5197 5185 1620 73 0 0 chr4 198254096 198254288 -4074059 - AluSc SINE Alu -117 192 1 2914 163 4 9 chr4 198254288 198254813 -4073534 - L1P LINE L1 -961 5185 4662 2471 196 82 2 chr4 198254808 198255309 -4073038 - L1MB2 LINE L1 -52 6119 5579 * 904 156 13 104 chr4 198255475 198255706 -4072641 - L1MB2 LINE L1 -574 5597 5388 1575 209 55 25 chr4 198256790 198257230 -4071117 + MLT1D LTR MaLR 46 498 -7 406 170 21 0 chr4 198257936 198258030 -4070317 + L1MA8 LINE L1 6193 6288 -3 30 59 0 0 chr4 198258098 198258149 -4070198 + AT_rich Low_complexity Low_complexity 1 51 0 434 358 171 16 chr4 198258493 198259219 -4069128 + L2 LINE L2 1611 2448 -866 4581 172 31 29 chr4 198260156 198260297 -4068050 - L1PA16 LINE L1 -9 6157 6018 189 0 0 0 chr4 198260297 198260318 -4068029 + (TCCC)n Simple_repeat Simple_repeat 2 22 0 4581 172 31 29 chr4 198260318 198261800 -4066547 - L1PA16 LINE L1 -148 6018 4541 2421 162 8 52 chr4 198261800 198262230 -4066117 - LOR1b LTR ERV1 0 461 53 2342 99 0 13 chr4 198262230 198262543 -4065804 + AluSc SINE Alu 1 309 0 2421 162 8 52 chr4 198262543 198262594 -4065753 - LOR1b LTR ERV1 -408 53 1 4581 172 31 29 chr4 198262594 198262799 -4065548 - L1PA16 LINE L1 -1625 4541 4338 520 302 97 3 chr4 198263185 198263506 -4064841 + L1ME4a LINE L1 5501 5851 -270 1896 166 7 0 chr4 198265542 198265850 -4062497 - AluJo SINE Alu 0 312 3 237 268 24 60 chr4 198265854 198266022 -4062325 - L1MD3 LINE L1 -68 7927 7766 1825 254 85 32 chr4 198266202 198266296 -4062051 - L1MD2 LINE L1 -345 6014 5926 2482 66 0 10 chr4 198266296 198266601 -4061746 + AluY SINE Alu 1 302 -9 1825 254 85 32 chr4 198266601 198267675 -4060672 - L1MD2 LINE L1 -433 5926 4798 2171 123 0 37 chr4 198268276 198268600 -4059747 - AluSx SINE Alu 0 312 1 285 29 0 0 chr4 198269361 198269395 -4058952 + (CA)n Simple_repeat Simple_repeat 2 35 0 2238 112 7 0 chr4 198270742 198271038 -4057309 + AluSg SINE Alu 1 298 -12 183 42 0 0 chr4 198271811 198271835 -4056512 + (CA)n Simple_repeat Simple_repeat 1 24 0 2450 68 0 0 chr4 198272176 198272471 -4055876 - AluY SINE Alu -16 295 1 1495 188 38 3 chr4 198272860 198273179 -4055168 - MER44D DNA MER2_type 0 609 10 35 71 0 0 chr4 198273380 198273450 -4054897 + AT_rich Low_complexity Low_complexity 1 70 0 259 227 33 3 chr4 198281547 198281620 -4046727 + MIR SINE MIR 75 144 -64 2731 13 0 0 chr4 198281805 198282108 -4046239 - AluYa5 SINE Alu -8 303 1 266 186 0 17 chr4 198284082 198284132 -4044215 + AluS SINE Alu 1 49 -253 259 0 0 0 chr4 198284132 198284166 -4044181 + AluY SINE Alu 1 34 -274 1863 136 35 11 chr4 198284182 198284469 -4043878 + AluSc SINE Alu 1 294 -15 21 0 0 0 chr4 198284979 198285000 -4043347 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4 198286739 198286767 -4041580 + AT_rich Low_complexity Low_complexity 1 28 0 2159 96 3 30 chr4 198287355 198287658 -4040689 + AluSq SINE Alu 1 295 -18 2187 115 0 0 chr4 198287670 198287965 -4040382 + AluSx SINE Alu 2 296 -16 248 341 141 7 chr4 198288487 198288622 -4039725 - MIR3 SINE MIR -5 203 51 2108 128 6 26 chr4 198290072 198290385 -4037962 - AluSg SINE Alu -3 307 1 2192 104 48 25 chr4 198290861 198291217 -4037130 + THE1B LTR MaLR 1 364 0 2271 94 60 20 chr4 198291498 198291848 -4036499 + THE1B LTR MaLR 1 364 0 11735 84 5 25 chr4 198291848 198292339 -4036008 + THE1B-int LTR MaLR 1 500 -1080 2144 110 3 7 chr4 198292339 198292638 -4035709 + AluSg SINE Alu 1 298 -12 11735 84 5 25 chr4 198292638 198293758 -4034589 + THE1B-int LTR MaLR 500 1580 0 2172 104 75 20 chr4 198293758 198294103 -4034244 + THE1B LTR MaLR 1 364 0 2303 54 39 0 chr4 198294649 198294928 -4033419 + AluY SINE Alu 1 290 -21 608 298 39 23 chr4 198295248 198295553 -4032794 - L1MC/D LINE L1 -2107 5701 5392 385 333 139 28 chr4 198295566 198295996 -4032351 - L1MC/D LINE L1 -807 5339 4862 2232 95 0 0 chr4 198296576 198296887 -4031460 + AluY SINE Alu 1 311 0 22 70 0 0 chr4 198297968 198298011 -4030336 + AT_rich Low_complexity Low_complexity 1 43 0 2099 117 13 7 chr4 198298141 198298535 -4029812 + AluSc SINE Alu 1 396 0 236 164 18 0 chr4 198299505 198299560 -4028787 - AluSp/q SINE Alu 0 303 248 2074 108 0 0 chr4 198299739 198300016 -4028331 + AluSg1 SINE Alu 16 292 -17 259 207 17 0 chr4 198300219 198300277 -4028070 + LTR40a LTR ERVL 74 132 -387 2116 113 3 3 chr4 198300409 198300702 -4027645 + AluSg SINE Alu 1 293 -17 2004 135 3 7 chr4 198300754 198301051 -4027296 + AluSx SINE Alu 2 297 -15 267 31 0 0 chr4 198301051 198301083 -4027264 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 207 375 55 8 chr4 198301108 198301236 -4027111 + L2 LINE L2 3171 3304 -9 7933 65 11 3 chr4 198301277 198302276 -4026071 + LTR13 LTR ERVK 1 1007 0 527 216 10 0 chr4 198302368 198302470 -4025877 - LTR40a LTR ERVL -7 512 410 878 294 7 33 chr4 198302480 198302554 -4025793 - LTR40a LTR ERVL -222 297 223 2389 114 31 14 chr4 198302554 198302912 -4025435 - THE1B LTR MaLR 0 364 1 878 294 7 33 chr4 198302912 198303140 -4025207 - LTR40a LTR ERVL -296 223 3 2128 113 0 43 chr4 198304264 198304590 -4023757 - AluSp SINE Alu 0 313 2 481 267 48 51 chr4 198306382 198306636 -4021711 + L1MA5 LINE L1 2 567 -6642 11039 174 31 18 chr4 198306640 198308227 -4020120 + L1MA5 LINE L1 4063 5628 -1734 2506 165 35 35 chr4 198308227 198308537 -4019810 - LOR1b LTR ERV1 0 461 149 2361 59 0 3 chr4 198308537 198308826 -4019521 - AluY SINE Alu -23 288 1 2506 165 35 35 chr4 198308826 198308976 -4019371 - LOR1b LTR ERV1 -311 150 1 11039 174 31 18 chr4 198308976 198310635 -4017712 + L1MA5 LINE L1 5628 7360 -2 23 0 0 0 chr4 198310635 198310658 -4017689 + AT_rich Low_complexity Low_complexity 1 23 0 251 350 114 0 chr4 198311074 198311197 -4017150 - MER5A DNA MER1_type -3 186 50 2140 109 3 10 chr4 198311197 198311499 -4016848 + AluSg SINE Alu 1 300 -10 243 283 130 45 chr4 198311703 198312011 -4016336 - L2 LINE L2 -991 2323 1990 2006 101 42 7 chr4 198312017 198312303 -4016044 + AluSg1 SINE Alu 1 296 -13 2163 105 20 0 chr4 198314469 198314765 -4013582 + AluSx SINE Alu 1 302 -10 189 0 0 0 chr4 198314906 198314927 -4013420 + (TG)n Simple_repeat Simple_repeat 1 21 0 464 242 0 0 chr4 198315406 198315501 -4012846 - L2 LINE L2 0 3313 3219 1801 130 16 63 chr4 198315752 198316068 -4012279 - AluSx SINE Alu -9 303 3 1673 194 45 28 chr4 198316069 198316467 -4011880 + LTR52 LTR ERVL 14 418 -3 1241 226 41 63 chr4 198316467 198316908 -4011439 + MLT1D LTR MaLR 75 505 0 2602 306 111 56 chr4 198316956 198317150 -4011197 + L2 LINE L2 484 666 -2648 1611 226 49 6 chr4 198317150 198317500 -4010847 - MLT1A1 LTR MaLR 0 365 1 2602 306 111 56 chr4 198317500 198319301 -4009046 + L2 LINE L2 666 2588 -726 242 309 66 0 chr4 198319581 198319717 -4008630 + LTR16B LTR ERVL 303 447 -17 312 303 64 58 chr4 198319880 198320068 -4008279 + L2 LINE L2 2854 3042 -271 227 360 22 0 chr4 198321083 198321172 -4007175 - MIR3 SINE MIR -41 167 77 2060 97 4 14 chr4 198321525 198321804 -4006543 + AluSx SINE Alu 1 276 -36 2056 88 40 0 chr4 198322752 198323076 -4005271 - AluSx SINE Alu 0 335 1 580 144 58 0 chr4 198323160 198323264 -4005083 + L1MC1 LINE L1 6224 6333 0 2209 104 0 0 chr4 198323584 198323872 -4004475 - AluSx SINE Alu -24 288 1 400 272 35 64 chr4 198323885 198324058 -4004289 - MIR SINE MIR -93 169 2 216 182 0 0 chr4 198325963 198326007 -4002340 + (TAA)n Simple_repeat Simple_repeat 3 46 0 195 244 39 39 chr4 198326012 198326090 -4002257 - MIR SINE MIR 0 262 185 935 136 0 0 chr4 198326347 198326479 -4001868 + AluSg SINE Alu 1 132 -178 279 208 0 62 chr4 198326481 198326577 -4001770 + L1MC4 LINE L1 6614 6703 -1339 270 0 0 0 chr4 198326577 198326607 -4001740 + (TA)n Simple_repeat Simple_repeat 2 31 0 1260 133 0 0 chr4 198326608 198326788 -4001559 + AluSg SINE Alu 132 311 -1 21 36 0 0 chr4 198327894 198327922 -4000425 + AT_rich Low_complexity Low_complexity 1 28 0 236 361 144 26 chr4 198328149 198328462 -3999885 - L2 LINE L2 -3 3269 2920 9818 110 59 3 chr4 198328701 198329227 -3999120 - L1PBa LINE L1 -3892 2971 2476 213 0 81 0 chr4 198329227 198329264 -3999083 + T-rich Low_complexity Low_complexity 1 40 0 9818 110 59 3 chr4 198329264 198330381 -3997966 - L1PBa LINE L1 -4387 2476 1092 435 240 8 8 chr4 198330357 198330482 -3997865 - L1PBa LINE L1 -6071 792 668 * 2102 108 0 0 chr4 198330774 198331052 -3997295 - AluSg SINE Alu -32 278 1 238 335 119 16 chr4 198331088 198331282 -3997065 - L2 LINE L2 -1004 2310 2097 1393 69 0 0 chr4 198332220 198332394 -3995953 + AluY SINE Alu 132 305 -6 2433 82 0 0 chr4 198333605 198333909 -3994438 + AluY SINE Alu 2 305 -6 2023 123 20 10 chr4 198335811 198336113 -3992234 - AluSx SINE Alu -7 305 1 2068 222 59 59 chr4 198336332 198336476 -3991871 + L1ME1 LINE L1 5030 5172 -994 2240 77 27 13 chr4 198336476 198336776 -3991571 + AluY SINE Alu 1 304 -7 2068 222 59 59 chr4 198336776 198336792 -3991555 + L1ME1 LINE L1 5172 5186 -980 1595 170 44 4 chr4 198336792 198337063 -3991284 + AluJb SINE Alu 1 282 -30 2068 222 59 59 chr4 198337063 198337784 -3990563 + L1ME1 LINE L1 5186 5907 -259 222 37 0 0 chr4 198337891 198337918 -3990429 + (TA)n Simple_repeat Simple_repeat 2 28 0 2658 232 42 61 chr4 198338272 198339030 -3989317 + L1MA7 LINE L1 1 744 -5537 2299 299 32 43 chr4 198338999 198339837 -3988510 + L1MA7 LINE L1 584 1412 -4869 * 566 173 24 8 chr4 198339834 198339961 -3988386 + L1MA7 LINE L1 2398 2526 -3824 * 1845 193 12 22 chr4 198339947 198340362 -3987985 + L1MA7 LINE L1 4828 5238 -1112 504 145 57 63 chr4 198340490 198340836 -3987511 + L1MA7 LINE L1 5934 6384 -111 2092 101 7 27 chr4 198340836 198341134 -3987213 + AluSc SINE Alu 1 292 -17 504 145 57 63 chr4 198341134 198341245 -3987102 + L1MA7 LINE L1 6384 6494 -1 22 35 0 0 chr4 198343275 198343304 -3985043 + AT_rich Low_complexity Low_complexity 1 29 0 2464 84 3 0 chr4 198343472 198343781 -3984566 + AluSg SINE Alu 1 310 0 655 242 36 0 chr4 198343885 198344050 -3984297 + MIR SINE MIR 92 262 0 288 321 51 7 chr4 198344290 198344427 -3983920 + L2 LINE L2 3170 3312 -1 6277 136 11 18 chr4 198344483 198345621 -3982726 - L1MA4 LINE L1 0 6300 5172 2266 101 0 10 chr4 198345645 198345951 -3982396 + AluSg SINE Alu 1 303 -7 2008 106 3 33 chr4 198346938 198347269 -3981078 - AluSx SINE Alu 0 312 1 338 268 45 27 chr4 198347400 198347512 -3980835 + MER2 DNA MER2_type 232 345 0 248 359 48 87 chr4 198347838 198348044 -3980303 + L2 LINE L2 3032 3229 -43 422 335 63 28 chr4 198348162 198348449 -3979898 - L2 LINE L2 -1178 2136 1840 2321 95 7 0 chr4 198348714 198349044 -3979303 + AluSg SINE Alu 3 334 0 421 309 55 24 chr4 198349170 198349529 -3978818 + LTR16B LTR ERVL 6 449 -15 2264 105 3 10 chr4 198349691 198350004 -3978343 - AluSx SINE Alu -1 311 1 225 224 0 0 chr4 198350324 198350373 -3977974 - MIR3 SINE MIR -3 205 157 3500 164 30 7 chr4 198352006 198352573 -3975774 + LTR22 LTR ERVK 1 580 0 347 306 76 32 chr4 198352699 198352856 -3975491 - MIR3 SINE MIR -24 184 21 2343 65 7 7 chr4 198353037 198353329 -3975018 + AluY SINE Alu 1 292 -19 202 232 36 0 chr4 198353370 198353426 -3974921 + GA-rich Low_complexity Low_complexity 2 59 0 362 208 42 104 chr4 198353566 198353710 -3974637 + LTR33A LTR ERVL 38 172 -351 441 138 15 0 chr4 198354611 198354676 -3973671 - MER2 DNA MER2_type 0 345 280 397 199 0 44 chr4 198355106 198355287 -3973060 + (TA)n Simple_repeat Simple_repeat 2 174 0 1500 70 8 104 chr4 198355490 198355749 -3972598 + AluY SINE Alu 60 293 -18 279 237 0 0 chr4 198357250 198357309 -3971038 - MLT1I LTR MaLR -35 374 316 1143 297 72 8 chr4 198357364 198357751 -3970596 - LTR16C LTR ERVL -26 465 54 2129 92 35 0 chr4 198358228 198358512 -3969835 + AluY SINE Alu 1 294 -17 219 220 0 0 chr4 198358512 198358562 -3969785 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 2345 151 61 0 chr4 198359051 198359443 -3968904 + MER57B LTR ERV1 1 416 -18 2361 76 3 0 chr4 198359443 198359731 -3968616 + AluSq SINE Alu 1 289 -24 21 0 0 0 chr4 198359968 198359989 -3968358 + AT_rich Low_complexity Low_complexity 1 21 0 1434 78 37 91 chr4 198361061 198361304 -3967043 - MER30 DNA MER1_type 0 230 1 1638 160 14 82 chr4 198361391 198361854 -3966493 - MER4A LTR ERV1 -185 349 1 439 236 86 21 chr4 198361938 198362078 -3966269 - MLT1D LTR MaLR -350 155 7 521 273 70 31 chr4 198362364 198362622 -3965725 - MLT1D LTR MaLR -202 265 1 2502 71 0 0 chr4 198363577 198363886 -3964461 - AluY SINE Alu -2 309 1 312 339 126 20 chr4 198364162 198364416 -3963931 - HAL1b LINE L1 -639 709 429 268 291 99 35 chr4 198364799 198364940 -3963407 - MLT1H LTR MaLR 0 549 400 2094 124 0 16 chr4 198365090 198365404 -3962943 - AluSx SINE Alu 0 312 4 290 354 38 13 chr4 198366225 198366383 -3961964 - L1ME3A LINE L1 -20 6150 5989 2438 88 0 0 chr4 198367506 198367814 -3960533 - AluSx SINE Alu -4 308 1 4834 143 89 5 chr4 198368160 198368922 -3959425 + LTR1B LTR ERV1 1 826 0 27 62 0 0 chr4 198369606 198369654 -3958693 + AT_rich Low_complexity Low_complexity 1 48 0 408 312 153 5 chr4 198369770 198369972 -3958375 + MIR SINE MIR 31 262 0 2045 109 10 10 chr4 198371114 198371408 -3956939 + AluY SINE Alu 1 294 -17 450 94 0 0 chr4 198373056 198373120 -3955227 + (GA)n Simple_repeat Simple_repeat 1 64 0 950 135 180 69 chr4 198374193 198374390 -3953957 + L1MA8 LINE L1 6010 6241 -50 1583 179 3 38 chr4 198374390 198374709 -3953638 + AluJo SINE Alu 1 308 -4 950 135 180 69 chr4 198374709 198374756 -3953591 + L1MA8 LINE L1 6241 6281 -10 466 301 55 6 chr4 198374845 198375008 -3953339 + MIR SINE MIR 7 177 -85 2082 92 29 0 chr4 198375600 198375873 -3952474 - AluSp SINE Alu -32 281 1 1644 255 98 79 chr4 198375874 198377445 -3950902 + L1MEc LINE L1 1042 2612 -3603 362 299 35 14 chr4 198378139 198378283 -3950064 + LTR33 LTR ERVL 373 519 -2 2250 95 7 0 chr4 198378618 198378914 -3949433 + AluSg SINE Alu 1 298 -12 259 300 95 37 chr4 198379907 198380180 -3948167 + HAL1 LINE L1 1455 1743 -764 286 307 0 0 chr4 198380653 198380728 -3947619 - MIR SINE MIR -36 226 152 1241 240 95 20 chr4 198380808 198381343 -3947004 - L1ME LINE L1 -390 5774 5196 960 225 31 10 chr4 198381369 198381662 -3946685 + L1M4 LINE L1 4386 4684 -1462 25 0 0 0 chr4 198381691 198381716 -3946631 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr4 198381925 198381955 -3946392 + AT_rich Low_complexity Low_complexity 1 30 0 2161 133 0 3 chr4 198381958 198382258 -3946089 - AluSq SINE Alu -14 299 1 534 220 91 0 chr4 198383355 198383487 -3944860 - MLT1H LTR MaLR 0 549 406 524 171 0 0 chr4 198383597 198383679 -3944668 - MER2 DNA MER2_type -262 83 2 209 33 33 0 chr4 198383698 198383728 -3944619 + (TTATA)n Simple_repeat Simple_repeat 5 35 0 2491 66 3 0 chr4 198383845 198384146 -3944201 - AluY SINE Alu -9 302 1 4309 123 21 31 chr4 198438389 198439570 -3888777 + MER41-int LTR ERV1 3857 5384 -879 954 111 14 0 chr4 198439573 198439717 -3888630 + MER41-int LTR ERV1 4996 5141 -805 2277 151 8 16 chr4 198440512 198440890 -3887457 - THE1C LTR MaLR 0 375 1 439 273 131 32 chr4 198442065 198442416 -3885931 + L2 LINE L2 2688 3068 -245 351 302 16 24 chr4 198442418 198442544 -3885803 + L2 LINE L2 3169 3293 -20 231 318 40 32 chr4 198443227 198443353 -3884994 + L2 LINE L2 2368 2494 -820 1712 152 168 8 chr4 198444125 198444494 -3883853 + MSTA LTR MaLR 1 428 0 668 302 78 77 chr4 198444996 198445371 -3882976 + L1MEd LINE L1 22 400 -5719 1803 149 59 12 chr4 198445371 198445693 -3882654 + MER1B DNA MER1_type 1 337 0 668 302 78 77 chr4 198445693 198446006 -3882341 + L1MEd LINE L1 400 711 -5408 309 298 43 7 chr4 198446103 198446244 -3882103 + L1MEd LINE L1 921 1066 -5053 22 35 0 0 chr4 198446316 198446345 -3882002 + AT_rich Low_complexity Low_complexity 1 29 0 766 246 22 36 chr4 198446419 198446643 -3881704 - Charlie1 DNA MER1_type -1115 1646 1426 226 292 11 0 chr4 198447509 198447598 -3880749 + L1MEd LINE L1 2245 2334 -3795 285 221 70 0 chr4 198447679 198447765 -3880582 - MLT1H LTR MaLR 0 549 458 331 282 86 79 chr4 198447803 198448083 -3880264 - MLT1H LTR MaLR -258 291 10 1818 83 0 0 chr4 198448123 198448353 -3879994 + AluSc SINE Alu 62 291 -18 245 204 0 0 chr4 198448607 198448656 -3879691 - L1ME3 LINE L1 -8 6154 6106 1912 279 150 24 chr4 198448657 198450297 -3878050 - L1MEc LINE L1 -2098 4117 2272 246 268 63 0 chr4 198450392 198450534 -3877813 - L1MEc LINE L1 -4162 2234 2084 1321 200 18 18 chr4 198451733 198452013 -3876334 - AluJo SINE Alu -21 291 12 1939 149 3 3 chr4 198452086 198452382 -3875965 - AluSx SINE Alu -16 296 1 1319 224 55 32 chr4 198453086 198453465 -3874882 + MLT1B LTR MaLR 1 388 -2 1824 140 3 17 chr4 198453649 198453941 -3874406 - AluSx SINE Alu -24 288 1 211 150 0 25 chr4 198453984 198454024 -3874323 + (TAA)n Simple_repeat Simple_repeat 1 39 0 239 265 36 24 chr4 198454141 198454224 -3874123 - MIR SINE MIR -105 157 74 285 364 8 8 chr4 198454336 198454454 -3873893 - MIR3 SINE MIR -51 157 40 31 26 0 0 chr4 198454740 198454778 -3873569 + AT_rich Low_complexity Low_complexity 1 38 0 2195 115 7 0 chr4 198454849 198455154 -3873193 - AluSg SINE Alu -3 307 1 40 79 0 0 chr4 198456006 198456095 -3872252 + AT_rich Low_complexity Low_complexity 1 89 0 2219 116 0 3 chr4 198456719 198457030 -3871317 + AluSg SINE Alu 1 310 0 24 0 0 0 chr4 198457363 198457387 -3870960 + AT_rich Low_complexity Low_complexity 1 24 0 379 228 98 8 chr4 198458775 198458898 -3869449 - MER45B DNA AcHobo -76 964 831 224 200 18 0 chr4 198459641 198459696 -3868651 + GA-rich Low_complexity Low_complexity 2 57 0 279 83 0 0 chr4 198459830 198459866 -3868481 + AluJ/FLAM SINE Alu 45 80 -222 1398 157 46 4 chr4 198459889 198460150 -3868197 + AluJo SINE Alu 1 272 -40 347 259 97 127 chr4 198460376 198460921 -3867426 + L1M2 LINE L1 440 1229 -5620 523 290 97 12 chr4 198462115 198462374 -3865973 + L1ME LINE L1 3180 3460 -2686 317 281 54 48 chr4 198462573 198462740 -3865607 + L1ME LINE L1 3742 3909 -2237 423 309 154 19 chr4 198463086 198463548 -3864799 + L1ME LINE L1 4298 4821 -1325 273 319 24 6 chr4 198463626 198463795 -3864552 + L1ME LINE L1 4944 5115 -1031 268 279 65 63 chr4 198463913 198464150 -3864197 + L1ME LINE L1 5416 5658 -463 797 253 26 10 chr4 198465001 198465195 -3863152 - MIR SINE MIR -21 241 45 331 334 35 57 chr4 198465260 198465631 -3862716 + L1MEc LINE L1 93 455 -5941 645 244 93 55 chr4 198465969 198466636 -3861711 + L1MEc LINE L1 770 1461 -4935 312 290 53 71 chr4 198466643 198466812 -3861535 + L1MEc LINE L1 1446 1611 -4604 24 32 0 0 chr4 198467384 198467415 -3860932 + AT_rich Low_complexity Low_complexity 1 31 0 326 314 62 69 chr4 198467552 198467842 -3860505 - L1ME4a LINE L1 -239 5882 5595 1655 192 14 3 chr4 198468502 198468799 -3859548 + AluJo SINE Alu 1 300 -12 23 0 0 0 chr4 198470104 198470127 -3858220 + AT_rich Low_complexity Low_complexity 1 23 0 1722 185 0 23 chr4 198470128 198470430 -3857917 - AluJo SINE Alu -17 295 1 182 237 0 0 chr4 198470440 198470478 -3857869 - MIR3 SINE MIR -21 187 150 1225 190 97 21 chr4 198470905 198471364 -3856983 + MLT2C2 LTR ERVL 1 424 -40 277 161 0 48 chr4 198471894 198471956 -3856391 + MER53 DNA DNA 1 59 -130 24 0 0 0 chr4 198471958 198471982 -3856365 + AT_rich Low_complexity Low_complexity 1 24 0 335 173 82 0 chr4 198471987 198472097 -3856250 - MER53 DNA DNA -29 160 42 1873 160 14 0 chr4 198472098 198472386 -3855961 + AluSx SINE Alu 1 292 -20 22 35 0 0 chr4 198473545 198473574 -3854773 + AT_rich Low_complexity Low_complexity 1 29 0 541 275 86 52 chr4 198473683 198474069 -3854278 + MLT1G1 LTR MaLR 1 399 -196 22 56 0 0 chr4 198475231 198475267 -3853080 + AT_rich Low_complexity Low_complexity 1 36 0 2244 111 0 13 chr4 198475339 198475654 -3852693 - AluY SINE Alu 0 311 1 2192 116 51 25 chr4 198475678 198476033 -3852314 - THE1B LTR MaLR 0 364 1 11772 91 5 0 chr4 198476033 198477605 -3850742 - THE1B-int LTR MaLR 0 1580 1 1917 137 63 26 chr4 198477605 198477955 -3850392 - THE1B LTR MaLR 0 364 2 333 297 61 6 chr4 198478267 198478432 -3849915 - MERVL LTR ERVL -1174 4311 4138 373 324 116 0 chr4 198478873 198479080 -3849267 - MERVL LTR ERVL -2377 3277 3047 10501 153 18 12 chr4 198479389 198481196 -3847151 - Tigger1 DNA MER2_type -4 2414 594 2066 145 0 13 chr4 198481196 198481499 -3846848 - AluSx SINE Alu -13 299 1 10501 153 18 12 chr4 198481499 198481636 -3846711 - Tigger1 DNA MER2_type -1824 594 459 293 200 0 0 chr4 198481634 198481689 -3846658 + AluJ/FLAM SINE Alu 7 61 -241 * 25 0 0 0 chr4 198482424 198482449 -3845898 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr4 198482509 198482530 -3845817 + AT_rich Low_complexity Low_complexity 1 21 0 1518 139 0 14 chr4 198483038 198483261 -3845086 + AluSg/x SINE Alu 70 289 -21 437 277 0 54 chr4 198483806 198483954 -3844393 + LTR16A LTR ERVL 57 196 -254 784 251 6 6 chr4 198483973 198484152 -3844195 + LTR28 LTR ERV1 1 179 -841 580 219 71 44 chr4 198484182 198484497 -3843850 + MER52A LTR ERV1 275 1305 -23 269 327 107 6 chr4 198484627 198484786 -3843561 + LTR16A LTR ERVL 213 387 -63 1958 131 0 39 chr4 198486577 198486889 -3841458 + AluSq SINE Alu 1 300 -13 2361 71 0 7 chr4 198487036 198487333 -3841014 + AluY SINE Alu 1 295 -16 2252 110 7 0 chr4 198487452 198487761 -3840586 + AluSq SINE Alu 1 311 -2 21 0 0 0 chr4 198489350 198489371 -3838976 + AT_rich Low_complexity Low_complexity 1 21 0 3416 155 64 26 chr4 198489451 198490140 -3838207 + LTR62 LTR ERVK 3 717 -2 377 331 114 38 chr4 198490163 198490795 -3837552 + L1MEd LINE L1 871 1542 -4587 377 281 93 60 chr4 198490950 198491756 -3836591 + L1MEd LINE L1 2309 5398 -2393 698 283 96 34 chr4 198491992 198492345 -3836002 + LTR33 LTR ERVL 11 385 -136 9718 112 30 21 chr4 198492857 198494528 -3833819 + HUERS-P1 LTR ERV1 2206 3890 -2373 2150 116 19 66 chr4 198495197 198495362 -3832985 + THE1B LTR MaLR 1 172 -192 2172 71 0 0 chr4 198495362 198495651 -3832696 - AluY SINE Alu 0 305 17 2150 116 19 66 chr4 198495651 198495862 -3832485 + THE1B LTR MaLR 172 360 -4 515 325 5 38 chr4 198497287 198497499 -3830848 - MIR SINE MIR -10 252 48 207 69 0 0 chr4 198497740 198497769 -3830578 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1832 163 18 76 chr4 198497795 198498065 -3830282 - L1MB2 LINE L1 -1 6170 5886 2337 113 0 3 chr4 198498065 198498376 -3829971 + AluSx SINE Alu 1 310 -2 1832 163 18 76 chr4 198498376 198498473 -3829874 - L1MB2 LINE L1 -285 5886 5834 2307 62 7 23 chr4 198498473 198498780 -3829567 - AluY SINE Alu -9 302 1 1832 163 18 76 chr4 198498780 198498915 -3829432 - L1MB2 LINE L1 -337 5834 5693 221 277 0 0 chr4 198499282 198499329 -3829018 + MIR3 SINE MIR 113 159 -49 1845 171 3 28 chr4 198501152 198501515 -3826832 - MER47A DNA MER2_type 0 366 13 2285 115 3 0 chr4 198501994 198502299 -3826048 - AluSx SINE Alu -6 306 1 2136 119 47 39 chr4 198502322 198502683 -3825664 + THE1B LTR MaLR 1 364 0 2289 86 3 26 chr4 198502834 198503137 -3825210 - AluY SINE Alu -15 296 1 696 244 39 13 chr4 198503764 198503994 -3824353 - MER65B LTR ERV1 0 531 296 22 35 0 0 chr4 198508530 198508559 -3819788 + AT_rich Low_complexity Low_complexity 1 29 0 296 279 93 52 chr4 198510016 198510188 -3818159 + L2 LINE L2 2848 3026 -246 220 50 0 50 chr4 198510798 198510838 -3817509 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 607 258 109 7 chr4 198511468 198511770 -3816577 + Tigger8 DNA MER2_type 286 618 -48 443 263 115 33 chr4 198511813 198512056 -3816291 - L1ME3A LINE L1 -12 6158 5896 207 141 14 56 chr4 198512059 198512130 -3816217 + CT-rich Low_complexity Low_complexity 2 69 0 363 333 43 18 chr4 198512133 198512415 -3815932 - L1ME3A LINE L1 -272 5898 5610 425 262 50 25 chr4 198512473 198512696 -3815651 - L1MB2 LINE L1 -664 5514 5288 24 67 0 0 chr4 198513044 198513089 -3815258 + AT_rich Low_complexity Low_complexity 1 45 0 332 299 94 26 chr4 198513144 198513378 -3814969 - L1MB2 LINE L1 -1198 4948 4699 1391 175 7 82 chr4 198513688 198514030 -3814317 + AluJb SINE Alu 3 321 0 192 306 0 0 chr4 198514717 198514766 -3813581 + L2 LINE L2 309 357 -2957 187 327 70 45 chr4 198515359 198515515 -3812832 + L2 LINE L2 1273 1432 -1882 700 249 34 67 chr4 198515517 198515700 -3812647 + L1MCc LINE L1 17 188 -6235 2110 53 3 147 chr4 198515700 198516061 -3812286 + AluY SINE Alu 1 309 -2 700 249 34 67 chr4 198516061 198516174 -3812173 + L1MCc LINE L1 188 303 -6120 475 285 25 10 chr4 198516207 198516407 -3811940 + L1MCc LINE L1 2242 2444 -4678 909 113 0 149 chr4 198516410 198516604 -3811743 + AluSg/x SINE Alu 137 301 -11 840 273 73 19 chr4 198516701 198517544 -3810803 + L1MCc LINE L1 2575 3424 -3517 1194 93 132 0 chr4 198517577 198517781 -3810566 - L1PA10 LINE L1 0 6168 5938 357 119 0 0 chr4 198517792 198517851 -3810496 + AluJb SINE Alu 208 266 -36 7946 154 42 17 chr4 198517859 198519423 -3808924 - L1P LINE L1 -1837 4309 2708 3045 254 43 19 chr4 198519423 198520672 -3807675 + L1MCc LINE L1 3471 4749 -2192 246 298 21 21 chr4 198520782 198520876 -3807471 + L1MCc LINE L1 4850 4943 -1998 201 379 61 0 chr4 198520971 198521037 -3807310 + L2 LINE L2 3209 3278 -35 1561 152 206 6 chr4 198521424 198521603 -3806744 - MSTA LTR MaLR 0 428 286 303 28 0 0 chr4 198521603 198521639 -3806708 + (GA)n Simple_repeat Simple_repeat 2 37 0 1561 152 206 6 chr4 198521639 198521814 -3806533 - MSTA LTR MaLR -142 286 3 260 339 73 0 chr4 198522808 198522917 -3805430 - MIR SINE MIR -87 175 59 1565 157 4 0 chr4 198523024 198523259 -3805088 + AluJb SINE Alu 1 236 -76 1314 169 88 9 chr4 198524387 198524773 -3803574 - LTR54 LTR ERV1 -1 509 31 1342 260 104 19 chr4 198524774 198525247 -3803100 - LTR23-int LTR ERV1 -411 7126 6614 3753 223 61 61 chr4 198525341 198527456 -3800891 - LTR23-int LTR ERV1 -697 5094 2480 413 258 42 46 chr4 198527460 198527677 -3800670 - LTR23-int LTR ERV1 -2551 2572 2357 301 161 69 23 chr4 198527708 198527795 -3800552 - LTR23-int LTR ERV1 -2644 2292 2202 387 227 35 41 chr4 198527990 198528162 -3800185 - LTR23-int LTR ERV1 -3013 1923 1753 296 191 0 90 chr4 198528281 198528370 -3799977 + MER34 LTR ERV1 4 84 -458 732 177 0 8 chr4 198528388 198528512 -3799835 + FLAM_C SINE Alu 5 127 -16 243 229 119 18 chr4 198528543 198528652 -3799695 + LTR48 LTR ERV1 157 276 -511 487 254 46 0 chr4 198528822 198528952 -3799395 - LTR23-int LTR ERV1 -2452 4306 4171 2250 108 0 3 chr4 198529151 198529448 -3798899 - AluY SINE Alu -15 296 1 531 224 7 14 chr4 198529500 198529647 -3798700 - LTR23-int LTR ERV1 -4119 1004 859 3739 120 2 14 chr4 198529851 198530444 -3797903 - LTR8 LTR ERV1 -105 586 1 3058 164 4 2 chr4 198530444 198530986 -3797361 - HUERS-P1 LTR ERV1 0 6263 5721 1901 106 32 11 chr4 198531086 198531369 -3796978 - AluSx SINE Alu -23 289 1 21 0 0 0 chr4 198531763 198531784 -3796563 + AT_rich Low_complexity Low_complexity 1 21 0 8073 175 26 19 chr4 198532472 198534962 -3793385 + L1MA4 LINE L1 3623 6132 -168 2377 71 17 0 chr4 198534962 198535258 -3793089 + AluY SINE Alu 1 301 -10 8073 175 26 19 chr4 198535258 198535429 -3792918 + L1MA4 LINE L1 6132 6300 0 4961 130 11 5 chr4 198535429 198536238 -3792109 + L1MA4A LINE L1 5484 6303 0 2813 77 17 96 chr4 198536528 198537009 -3791338 + MLT2A1 LTR ERVL 1 443 -1 297 287 92 107 chr4 198537385 198537657 -3790690 - L2 LINE L2 -44 3269 3002 * 338 324 69 37 chr4 198537646 198537862 -3790485 - L2 LINE L2 -945 2369 2147 22 0 0 0 chr4 198537865 198537887 -3790460 + AT_rich Low_complexity Low_complexity 1 22 0 333 333 136 8 chr4 198538009 198538273 -3790074 + L1ME LINE L1 4550 4847 -1299 372 288 34 29 chr4 198538348 198538553 -3789794 + L1ME LINE L1 5460 5665 -456 201 74 0 0 chr4 198540120 198540147 -3788200 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 1936 166 3 0 chr4 198540562 198540852 -3787495 - AluJo SINE Alu -21 291 1 2349 90 0 0 chr4 198540976 198541277 -3787070 + AluY SINE Alu 1 301 -10 1009 265 23 26 chr4 198541569 198541920 -3786427 - MER110 LTR ERV1 0 491 142 463 204 68 0 chr4 198541922 198542025 -3786322 - MER110 LTR ERV1 -296 195 86 2093 154 3 3 chr4 198542035 198542347 -3786000 - AluSx SINE Alu 0 312 1 445 314 83 15 chr4 198543113 198543317 -3785030 + MIR SINE MIR 19 236 -26 1069 221 62 13 chr4 198543318 198543625 -3784722 + MLT1C LTR MaLR 1 322 -145 2371 74 7 0 chr4 198543710 198544007 -3784340 - AluSg SINE Alu -11 299 1 296 313 20 10 chr4 198546178 198546277 -3782070 + MIR SINE MIR 148 247 -15 265 279 81 0 chr4 198548164 198548275 -3780072 - MIR SINE MIR -65 197 78 2133 123 0 13 chr4 198548287 198548595 -3779752 + AluY SINE Alu 1 304 -7 2726 93 3 3 chr4 198548785 198549160 -3779187 - THE1C LTR MaLR 0 375 1 250 242 15 0 chr4 198549655 198549721 -3778626 - MLT1K LTR MaLR 0 588 522 442 313 56 26 chr4 198551305 198551538 -3776809 - MIR SINE MIR 0 262 23 2568 39 0 0 chr4 198553168 198553479 -3774868 - AluY SINE Alu 0 311 1 2549 36 10 0 chr4 198554580 198554888 -3773459 - AluYa5 SINE Alu 0 311 1 328 280 0 13 chr4 198555704 198555779 -3772568 - L2 LINE L2 -2 3311 3238 193 246 180 0 chr4 198556091 198556152 -3772195 - L2 LINE L2 -43 3229 3158 335 349 54 0 chr4 198556166 198556295 -3772052 - L2 LINE L2 0 3272 3137 409 330 39 15 chr4 198557206 198557412 -3770935 + L2 LINE L2 2931 3141 -172 2308 97 7 0 chr4 198557600 198557899 -3770448 + AluSc SINE Alu 1 301 -8 1846 176 14 0 chr4 198558352 198558648 -3769699 - AluSx SINE Alu -12 300 1 200 208 0 62 chr4 198558977 198559025 -3769322 - MIR SINE MIR -148 114 70 588 121 0 0 chr4 198559089 198559180 -3769167 + (GGGA)n Simple_repeat Simple_repeat 4 94 0 192 274 89 68 chr4 198561163 198561309 -3767038 - L3 LINE CR1 -64 1513 1365 1217 209 15 54 chr4 198561318 198561653 -3766694 + MSTB LTR MaLR 4 325 -101 211 382 77 6 chr4 198561741 198561911 -3766436 + L2 LINE L2 2159 2340 -974 217 333 71 62 chr4 198562197 198562422 -3765925 + L2 LINE L2 2826 3052 -220 242 298 28 50 chr4 198562528 198562669 -3765678 - MIR SINE MIR -56 206 69 393 247 2 47 chr4 198562721 198563154 -3765193 + (CACCG)n Simple_repeat Simple_repeat 1 413 0 9096 147 11 40 chr4 198563170 198563792 -3764555 + Tigger1 DNA MER2_type 33 671 -1747 2039 143 0 13 chr4 198563792 198564100 -3764247 + AluSx SINE Alu 1 304 -8 9096 147 11 40 chr4 198564100 198565241 -3763106 + Tigger1 DNA MER2_type 671 1746 -672 455 215 190 80 chr4 198566184 198566495 -3761852 - HAL1 LINE L1 -314 2193 1849 385 281 68 58 chr4 198566580 198566975 -3761372 - HAL1 LINE L1 -854 1653 1255 2122 105 0 0 chr4 198567033 198567319 -3761028 + AluSc SINE Alu 1 286 -23 25 0 0 0 chr4 198567320 198567345 -3761002 + AT_rich Low_complexity Low_complexity 1 25 0 222 303 0 20 chr4 198567377 198567476 -3760871 + CT-rich Low_complexity Low_complexity 4 100 0 376 264 115 58 chr4 198568288 198568462 -3759885 + MIR SINE MIR 35 218 -44 638 292 84 38 chr4 198568472 198568948 -3759399 - MLT1J LTR MaLR -13 498 1 269 288 121 22 chr4 198569215 198569538 -3758809 - L1M4 LINE L1 -3190 2956 2602 3001 123 12 0 chr4 198569720 198570214 -3758133 + L1P LINE L1 3465 3964 -2182 376 264 115 58 chr4 198571224 198571398 -3756949 + MIR SINE MIR 35 218 -44 638 292 84 38 chr4 198571408 198571884 -3756463 - MLT1J LTR MaLR -13 498 1 1009 305 86 49 chr4 198572151 198573047 -3755300 - L1MEd LINE L1 -3190 2939 2048 198 297 0 16 chr4 198573062 198573126 -3755221 + MIR SINE MIR 179 241 -21 441 279 75 35 chr4 198573435 198574194 -3754153 - L1MEd LINE L1 -4593 1717 895 26 64 0 0 chr4 198574252 198574299 -3754048 + AT_rich Low_complexity Low_complexity 1 47 0 280 346 19 44 chr4 198574333 198574492 -3753855 - L2 LINE L2 -383 2931 2777 351 186 43 36 chr4 198576282 198576422 -3751925 + (TA)n Simple_repeat Simple_repeat 2 142 0 27 0 0 0 chr4 198576452 198576479 -3751868 + AT_rich Low_complexity Low_complexity 1 27 0 318 392 8 8 chr4 198577496 198577621 -3750726 + L2 LINE L2 3189 3313 0 2143 114 4 0 chr4 198579332 198579636 -3748711 + AluSg SINE Alu 1 305 0 193 342 134 35 chr4 198580292 198580494 -3747853 + L2 LINE L2 2249 2470 -844 271 360 99 6 chr4 198581289 198581450 -3746897 + L2 LINE L2 3096 3271 -1 2133 111 7 0 chr4 198584018 198584306 -3744041 + AluSc SINE Alu 3 292 -17 218 264 0 19 chr4 198584557 198584610 -3743737 + MIR SINE MIR 60 111 -151 377 301 96 6 chr4 198586172 198586328 -3742019 + MIR3 SINE MIR 38 207 -1 255 103 0 0 chr4 198586526 198586565 -3741782 + (GA)n Simple_repeat Simple_repeat 1 39 0 184 394 58 7 chr4 198586578 198586715 -3741632 - L2 LINE L2 -222 3050 2907 338 352 98 30 chr4 198587330 198587770 -3740577 + L2 LINE L2 2816 3285 -28 409 309 158 0 chr4 198587915 198588080 -3740267 + MER69 DNA AcHobo 133 323 -2203 961 216 127 104 chr4 198588083 198588467 -3739880 - MER69 DNA AcHobo -69 2457 2083 1845 111 64 20 chr4 198588467 198588765 -3739582 - AluSx SINE Alu -1 311 1 961 216 127 104 chr4 198588765 198589098 -3739249 - MER69 DNA AcHobo -443 2083 424 1764 173 132 0 chr4 198589100 198589517 -3738830 + L1MA7 LINE L1 5795 6266 -25 1006 157 38 0 chr4 198589579 198589738 -3738609 + AluJo SINE Alu 121 285 -27 227 176 33 33 chr4 198589738 198589829 -3738518 + (TA)n Simple_repeat Simple_repeat 1 91 0 1048 126 32 16 chr4 198590011 198590201 -3738146 + Tigger2a DNA MER2_type 1 193 -241 629 104 19 38 chr4 198590210 198590316 -3738031 - FLAM_A SINE Alu -11 131 28 744 108 24 72 chr4 198590350 198590516 -3737831 + Tigger2a DNA MER2_type 204 361 -83 40574 34 23 2 chr4 198590529 198596549 -3731798 - L1PA2 LINE L1 -4 6151 1 302 158 303 0 chr4 198596550 198596626 -3731721 + Tigger2a DNA MER2_type 336 434 0 251 320 0 0 chr4 198596626 198596704 -3731643 + (TATG)n Simple_repeat Simple_repeat 3 80 0 25 0 0 0 chr4 198596845 198596870 -3731477 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr4 198596926 198596954 -3731393 + AT_rich Low_complexity Low_complexity 1 28 0 4940 204 59 14 chr4 198597898 198598288 -3730059 - L1MC1 LINE L1 -1 6401 6030 2142 88 7 3 chr4 198598288 198598571 -3729776 + AluSg SINE Alu 12 295 -15 4940 204 59 14 chr4 198598571 198600256 -3728091 - L1MC1 LINE L1 -372 6030 4209 317 24 24 0 chr4 198600256 198600298 -3728049 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4940 204 59 14 chr4 198600298 198600458 -3727889 - L1MC1 LINE L1 -2193 4209 4058 2078 24 0 4 chr4 198600466 198600714 -3727633 - L1PA4 LINE L1 0 6155 5909 285 264 44 0 chr4 198600720 198600811 -3727536 - L1MC1 LINE L1 -3570 2645 2551 808 244 30 34 chr4 198600826 198601154 -3727193 - L1MC1 LINE L1 -3939 2457 2131 454 291 50 36 chr4 198601633 198601853 -3726494 + MIR SINE MIR 40 262 0 24 0 0 0 chr4 198602055 198602079 -3726268 + AT_rich Low_complexity Low_complexity 1 24 0 783 203 0 0 chr4 198602657 198602815 -3725532 + L1MB1 LINE L1 6006 6163 -5 310 315 89 25 chr4 198603340 198603543 -3724804 + LTR33A LTR ERVL 237 452 -71 4571 117 46 67 chr4 198603566 198604466 -3723881 + L1PB4 LINE L1 5274 6154 -2 2284 111 33 28 chr4 198605805 198606167 -3722180 + THE1B LTR MaLR 1 364 0 1851 237 68 29 chr4 198606557 198607119 -3721228 - MLT1E LTR MaLR -9 584 1 579 310 24 43 chr4 198607473 198607802 -3720545 + ERVL LTR ERVL 4707 5029 -735 188 271 141 24 chr4 198607821 198607906 -3720441 - L3 LINE CR1 -1095 482 388 2004 137 0 9 chr4 198609234 198609549 -3718798 + AluSx SINE Alu 1 312 0 2105 157 93 5 chr4 198609656 198610044 -3718303 - MSTB LTR MaLR -4 422 1 2160 114 10 3 chr4 198611643 198611942 -3716405 + AluSg SINE Alu 1 301 -9 236 302 64 88 chr4 198611991 198612365 -3715982 - L3 LINE CR1 -6 1571 1207 2483 84 0 0 chr4 198612444 198612753 -3715594 + AluSg SINE Alu 1 309 -1 2346 103 0 0 chr4 198612753 198613054 -3715293 + AluSx SINE Alu 1 301 -11 188 273 18 18 chr4 198613153 198613208 -3715139 - L3 LINE CR1 -612 965 911 308 292 117 69 chr4 198613368 198613642 -3714705 - L3 LINE CR1 -732 845 559 36 23 0 0 chr4 198613794 198613837 -3714510 + AT_rich Low_complexity Low_complexity 1 43 0 2181 102 10 0 chr4 198614818 198615113 -3713234 + AluSp SINE Alu 1 298 -15 979 108 0 0 chr4 198615410 198615558 -3712789 + L1MA5A LINE L1 6146 6293 -4 468 154 0 34 chr4 198617811 198617928 -3710419 + GA-rich Low_complexity Low_complexity 5 117 0 2462 68 0 0 chr4 198618442 198618737 -3709610 - AluSx SINE Alu -17 295 1 573 179 55 92 chr4 198618839 198618909 -3709438 + L1MB8 LINE L1 5963 6034 -144 1659 174 19 32 chr4 198618909 198619225 -3709122 - AluJo SINE Alu 0 312 1 573 179 55 92 chr4 198619225 198619372 -3708975 + L1MB8 LINE L1 6034 6172 -6 1961 162 14 8 chr4 198619545 198619909 -3708438 + MER47A DNA MER2_type 1 366 0 672 246 172 4 chr4 198620592 198620860 -3707487 - MER39 LTR ERV1 -32 675 363 22 0 0 0 chr4 198621597 198621619 -3706728 + AT_rich Low_complexity Low_complexity 1 22 0 255 351 38 38 chr4 198621670 198621731 -3706616 - MER5A DNA MER1_type -4 185 125 * 282 273 77 70 chr4 198621671 198621731 -3706616 + MER5B DNA MER1_type 5 63 -115 2498 62 3 0 chr4 198621731 198622037 -3706310 + AluY SINE Alu 1 307 -4 255 351 38 38 chr4 198622037 198622160 -3706187 - MER5A DNA MER1_type -63 126 1 282 273 77 70 chr4 198622037 198622119 -3706228 + MER5B DNA MER1_type 63 148 -30 2188 112 3 7 chr4 198622368 198622672 -3705675 - AluSc SINE Alu -6 303 1 438 257 0 0 chr4 198622734 198622882 -3705465 + (TA)n Simple_repeat Simple_repeat 2 149 0 240 184 0 0 chr4 198622915 198622964 -3705383 + (TA)n Simple_repeat Simple_repeat 2 50 0 1792 186 7 0 chr4 198623081 198623377 -3704970 + AluJb SINE Alu 1 298 -14 2246 98 0 0 chr4 198623948 198624234 -3704113 + AluY SINE Alu 1 286 -25 243 0 0 0 chr4 198624237 198624264 -3704083 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1056 253 49 64 chr4 198624710 198625160 -3703187 - LTR47B LTR ERVL 0 443 1 2087 141 13 0 chr4 198626990 198627296 -3701051 + AluSg SINE Alu 1 310 0 1219 126 0 0 chr4 198627665 198627839 -3700508 + AluSg/x SINE Alu 135 308 -4 680 35 0 0 chr4 198627997 198628084 -3700263 + L1PA3 LINE L1 6068 6154 -1 22 0 0 0 chr4 198628147 198628169 -3700178 + AT_rich Low_complexity Low_complexity 1 22 0 31 44 0 0 chr4 198629423 198629468 -3698879 + AT_rich Low_complexity Low_complexity 1 45 0 2067 114 34 7 chr4 198629770 198630067 -3698280 + AluSx SINE Alu 1 305 -7 1003 215 22 56 chr4 198630174 198630444 -3697903 - MSTD LTR MaLR 0 396 136 969 154 43 0 chr4 198630455 198630643 -3697704 - Tigger1 DNA MER2_type 0 2418 2223 314 355 24 8 chr4 198630643 198630767 -3697580 + L2 LINE L2 2515 2640 -674 12361 147 28 17 chr4 198630814 198633034 -3695313 - Tigger1 DNA MER2_type -172 2246 4 419 202 10 20 chr4 198633038 198633137 -3695210 - MSTD LTR MaLR -298 98 1 2155 99 11 0 chr4 198633523 198633833 -3694514 - AluSq SINE Alu 0 313 1 2374 64 3 7 chr4 198634349 198634644 -3693703 + AluSp SINE Alu 1 294 -19 24 0 0 0 chr4 198634930 198634954 -3693393 + AT_rich Low_complexity Low_complexity 1 24 0 258 347 11 21 chr4 198635117 198635212 -3693135 - MIR SINE MIR -78 130 37 29 0 0 0 chr4 198635478 198635507 -3692840 + AT_rich Low_complexity Low_complexity 1 29 0 187 286 109 25 chr4 198635796 198635915 -3692432 - L2 LINE L2 -3 3269 3141 2063 182 43 87 chr4 198636285 198636798 -3691549 + MLT2B2 LTR ERVL 1 490 -25 651 28 47 9 chr4 198636798 198636905 -3691442 + (TAGA)n Simple_repeat Simple_repeat 3 113 0 2063 182 43 87 chr4 198636905 198636930 -3691417 + MLT2B2 LTR ERVL 490 515 0 203 217 145 14 chr4 198637471 198637540 -3690807 + MIR SINE MIR 175 252 -10 28 0 0 0 chr4 198638270 198638298 -3690049 + AT_rich Low_complexity Low_complexity 1 28 0 1095 177 138 50 chr4 198638512 198638795 -3689552 - MER7A DNA MER2_type -40 306 1 22 0 0 0 chr4 198639363 198639385 -3688962 + AT_rich Low_complexity Low_complexity 1 22 0 223 315 85 55 chr4 198640883 198641048 -3687299 + L3 LINE CR1 1364 1533 -44 182 200 0 0 chr4 198641074 198641104 -3687243 - MER5A DNA MER1_type -28 161 132 975 177 42 0 chr4 198641289 198641504 -3686843 - L1MA7 LINE L1 -2 6289 6066 344 289 15 22 chr4 198641637 198641772 -3686575 + GA-rich Low_complexity Low_complexity 3 136 0 519 252 27 0 chr4 198644137 198644284 -3684063 + FRAM SINE Alu 1 151 -15 239 333 75 44 chr4 198644323 198644482 -3683865 - MIR SINE MIR 0 262 99 5520 105 26 1 chr4 198646238 198647112 -3681235 + L1PA13 LINE L1 5256 6151 -12 4924 80 44 3 chr4 198647499 198648160 -3680187 - LTR12 LTR ERV1 0 688 1 524 236 138 6 chr4 198648627 198648801 -3679546 + L2 LINE L2 2872 3068 -245 801 237 0 11 chr4 198648812 198648989 -3679358 - FRAM SINE Alu 0 176 2 401 295 50 58 chr4 198648989 198649247 -3679100 + L2 LINE L2 3057 3312 -1 2499 65 3 3 chr4 198649283 198649591 -3678756 - AluY SINE Alu -3 308 1 356 339 69 28 chr4 198649632 198649951 -3678396 - L2 LINE L2 -815 2499 2168 2089 101 10 10 chr4 198651095 198651403 -3676944 - AluSc SINE Alu -1 308 1 1304 194 150 74 chr4 198651837 198652405 -3675942 - LTR36 LTR ERV1 0 611 1 821 28 19 0 chr4 198653392 198653499 -3674848 + (CTATT)n Simple_repeat Simple_repeat 5 113 0 31 26 0 0 chr4 198653646 198653684 -3674663 + AT_rich Low_complexity Low_complexity 1 38 0 194 114 0 23 chr4 198654920 198654964 -3673383 + (TA)n Simple_repeat Simple_repeat 1 43 0 395 139 35 0 chr4 198655329 198655444 -3672903 + (TA)n Simple_repeat Simple_repeat 2 120 0 828 292 99 22 chr4 198656635 198657091 -3671256 - LTR40a LTR ERVL 0 519 29 318 240 19 67 chr4 198657216 198657320 -3671027 + L2 LINE L2 3215 3313 0 358 131 10 40 chr4 198657369 198657468 -3670879 + (TA)n Simple_repeat Simple_repeat 2 97 0 419 163 139 0 chr4 198657651 198657737 -3670610 + MER4A LTR ERV1 1 98 -566 1093 172 67 91 chr4 198657792 198658089 -3670258 + MER4A LTR ERV1 375 664 0 203 338 0 52 chr4 198658405 198658482 -3669865 + L2 LINE L2 3020 3092 -180 2666 35 3 0 chr4 198659057 198659367 -3668980 + AluY SINE Alu 1 311 0 252 298 79 18 chr4 198660175 198660289 -3668058 - MIR SINE MIR -44 218 98 375 317 54 24 chr4 198660486 198660653 -3667694 + L1MEc LINE L1 35 206 -6190 1144 300 58 41 chr4 198660779 198661700 -3666647 + L1MEc LINE L1 318 1253 -5143 440 279 82 36 chr4 198661809 198662116 -3666231 + L1MEc LINE L1 1428 1760 -4636 2174 123 0 0 chr4 198662116 198662426 -3665921 - AluY SINE Alu -1 310 1 440 279 82 36 chr4 198662426 198662533 -3665814 + L1MEc LINE L1 1760 1861 -4535 234 273 0 0 chr4 198662568 198662623 -3665724 + MER61E LTR ERV1 1 55 -514 389 239 35 9 chr4 198662699 198662812 -3665535 + LTR25 LTR ERV1 248 363 -431 271 253 0 81 chr4 198662809 198662908 -3665439 + MER61E LTR ERV1 99 189 -380 * 679 182 13 44 chr4 198662992 198663183 -3665164 + MER61E LTR ERV1 341 773 -21 2153 211 58 37 chr4 198664290 198664851 -3663496 + L1ME LINE L1 64 642 -5784 2100 128 0 0 chr4 198664851 198665149 -3663198 + AluSg SINE Alu 1 298 -12 2153 211 58 37 chr4 198665149 198665237 -3663110 + L1ME LINE L1 642 727 -5699 1169 249 92 31 chr4 198665234 198665778 -3662569 + L1ME LINE L1 5012 5624 -822 * 2015 119 3 20 chr4 198665778 198666081 -3662266 + AluSc SINE Alu 1 298 -11 1169 249 92 31 chr4 198666081 198666330 -3662017 + L1ME LINE L1 5624 5856 -590 28 61 0 0 chr4 198666542 198666591 -3661756 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr4 198666839 198666867 -3661480 + AT_rich Low_complexity Low_complexity 1 28 0 243 224 0 40 chr4 198666921 198666997 -3661350 + CT-rich Low_complexity Low_complexity 2 74 0 21 57 0 0 chr4 198667754 198667789 -3660558 + AT_rich Low_complexity Low_complexity 1 35 0 2483 72 3 0 chr4 198669054 198669361 -3658986 + AluY SINE Alu 1 308 -3 1373 261 96 23 chr4 198669693 198670206 -3658141 - MLT1F1 LTR MaLR -4 563 14 296 302 25 6 chr4 198670288 198670457 -3657890 - L1MEc LINE L1 -3827 2388 2232 356 96 0 0 chr4 198670477 198670529 -3657818 - MER66B LTR ERV1 -140 346 295 261 326 104 5 chr4 198670536 198670757 -3657590 - L1MEc LINE L1 -4132 2264 2022 472 308 64 57 chr4 198670892 198671827 -3656520 - L1MEc LINE L1 -4642 1754 813 269 305 38 23 chr4 198672393 198672655 -3655692 - L1M4 LINE L1 -813 5333 5068 237 132 0 0 chr4 198672785 198672823 -3655524 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 210 322 0 22 chr4 198672824 198672914 -3655433 + CT-rich Low_complexity Low_complexity 3 90 0 261 281 72 54 chr4 198673016 198673351 -3654996 - L1M4 LINE L1 -1317 4829 4489 321 266 141 23 chr4 198673455 198673632 -3654715 - L1M4 LINE L1 -1794 4352 4155 21 0 0 0 chr4 198673693 198673714 -3654633 + AT_rich Low_complexity Low_complexity 1 21 0 436 224 97 105 chr4 198673830 198674058 -3654289 - L1M4 LINE L1 -3056 3090 2865 287 207 0 0 chr4 198674158 198674216 -3654131 - L1M4 LINE L1 -3435 2711 2654 858 245 98 31 chr4 198674499 198674953 -3653394 - MER39 LTR ERV1 0 687 5 1990 245 83 10 chr4 198675828 198676427 -3651920 + LTR48B LTR ERV1 2 644 0 266 353 53 13 chr4 198676923 198677073 -3651274 + MIR SINE MIR 106 261 -1 1233 240 72 9 chr4 198678030 198678376 -3649971 - MER39 LTR ERV1 0 707 340 2304 72 0 30 chr4 198678546 198678850 -3649497 - AluY SINE Alu -6 305 11 25 0 0 0 chr4 198678905 198678930 -3649417 + AT_rich Low_complexity Low_complexity 1 25 0 206 323 75 30 chr4 198679880 198680013 -3648334 - L2 LINE L2 0 3313 3175 214 337 87 0 chr4 198680359 198680451 -3647896 - L2 LINE L2 -556 2758 2659 1759 253 67 12 chr4 198680789 198681463 -3646884 + L1M4c LINE L1 2312 3022 -3360 1526 172 14 3 chr4 198681463 198681748 -3646599 - MER39 LTR ERV1 0 707 420 452 242 102 8 chr4 198681859 198681987 -3646360 + MIR SINE MIR 110 249 -13 297 0 0 0 chr4 198682497 198682530 -3645817 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 195 246 108 31 chr4 198684033 198684098 -3644249 - MIR SINE MIR -58 150 81 40 67 0 0 chr4 198684280 198684355 -3643992 + AT_rich Low_complexity Low_complexity 1 75 0 829 228 44 44 chr4 198685102 198685374 -3642973 - MER21B LTR ERV1 -121 742 471 * 1151 263 52 59 chr4 198685373 198685897 -3642450 - MER21B LTR ERV1 -327 536 17 1064 327 42 46 chr4 198686495 198686606 -3641741 - L2 LINE L2 -1 3312 3202 2451 69 0 3 chr4 198686606 198686911 -3641436 + AluY SINE Alu 1 304 -7 1064 327 42 46 chr4 198686911 198687326 -3641021 - L2 LINE L2 -111 3202 2791 897 229 75 26 chr4 198687897 198687939 -3640408 - L1MCa LINE L1 -5111 1830 1792 2148 113 30 7 chr4 198687939 198688240 -3640107 - AluSx SINE Alu -4 308 1 897 229 75 26 chr4 198688240 198688312 -3640035 - L1MCa LINE L1 -5149 1792 1725 186 43 0 0 chr4 198688312 198688335 -3640012 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 897 229 75 26 chr4 198688335 198688603 -3639744 - L1MCa LINE L1 -5216 1725 1428 737 272 61 55 chr4 198688638 198689014 -3639333 - L1MCa LINE L1 -5063 1360 979 1631 173 32 38 chr4 198689014 198689327 -3639020 - AluJb SINE Alu -1 311 1 737 272 61 55 chr4 198689327 198689494 -3638853 - L1MCa LINE L1 -5444 979 814 273 239 80 18 chr4 198689841 198689954 -3638393 - L1MCa LINE L1 -6194 229 110 218 330 80 27 chr4 198691046 198691158 -3637189 + L2 LINE L2 3139 3256 -16 183 42 0 0 chr4 198692000 198692024 -3636323 + (T)n Simple_repeat Simple_repeat 1 24 0 2090 86 24 14 chr4 198692389 198692680 -3635667 + AluSp SINE Alu 1 294 -19 638 268 54 38 chr4 198693048 198693362 -3634985 - LTR16A LTR ERVL -73 377 59 306 308 132 55 chr4 198694047 198694131 -3634216 + MIR SINE MIR 60 136 -126 2261 103 3 0 chr4 198694131 198694433 -3633914 + AluSq SINE Alu 6 308 -5 306 308 132 55 chr4 198694433 198694530 -3633817 + MIR SINE MIR 136 255 -7 2011 113 3 3 chr4 198694567 198694882 -3633465 - AluSg SINE Alu 0 315 1 964 222 12 25 chr4 198695394 198695563 -3632784 - MLT1C LTR MaLR 0 467 300 1363 186 89 58 chr4 198695563 198695992 -3632355 - LTR47B LTR ERVL 0 443 2 964 222 12 25 chr4 198695992 198696065 -3632282 - MLT1C LTR MaLR -167 300 228 762 223 51 9 chr4 198696109 198696324 -3632023 - MLT1C LTR MaLR -243 224 1 202 182 0 0 chr4 198698836 198698869 -3629478 + (TG)n Simple_repeat Simple_repeat 2 34 0 2343 215 76 21 chr4 198698989 198699264 -3629083 - L1MCa LINE L1 -3597 2829 2571 2327 94 0 3 chr4 198699264 198699561 -3628786 - AluSq SINE Alu -17 296 1 2343 215 76 21 chr4 198699561 198699762 -3628585 - L1MCa LINE L1 -3855 2571 2382 2053 145 10 0 chr4 198699762 198700059 -3628288 - AluJb SINE Alu -12 300 1 2343 215 76 21 chr4 198700059 198700529 -3627818 - L1MCa LINE L1 -4044 2382 1832 760 200 7 32 chr4 198700529 198700684 -3627663 - AluJb SINE Alu -8 304 154 1198 172 4 35 chr4 198700686 198700913 -3627434 - AluJo SINE Alu -82 230 11 4017 178 51 67 chr4 198700957 198701990 -3626357 - L1MCa LINE L1 -5369 1057 41 813 274 144 48 chr4 198702051 198702204 -3626143 - L1MC4 LINE L1 -185 7857 7720 2002 144 0 31 chr4 198702204 198702524 -3625823 - AluSx SINE Alu -2 310 1 813 274 144 48 chr4 198702524 198703016 -3625331 - L1MC4 LINE L1 -322 7720 7150 1980 230 45 62 chr4 198703051 198703724 -3624623 - LTR8 LTR ERV1 -15 676 16 21 0 0 0 chr4 198704341 198704362 -3623985 + AT_rich Low_complexity Low_complexity 1 21 0 9966 154 19 58 chr4 198704470 198707288 -3621059 + L1PA8 LINE L1 10 2826 -3635 649 103 0 0 chr4 198707307 198707404 -3620943 + L1PA8 LINE L1 2736 2832 -3629 19354 106 9 0 chr4 198707417 198711183 -3617164 + L1PA8 LINE L1 2736 6512 0 566 190 74 120 chr4 198711294 198711578 -3616769 + MLT1A1 LTR MaLR 45 315 -50 2518 30 7 0 chr4 198713495 198713794 -3614553 + AluY SINE Alu 1 301 -10 1373 192 48 14 chr4 198713803 198714095 -3614252 + AluJb SINE Alu 1 302 -10 182 293 53 73 chr4 198715521 198715671 -3612676 - MIR3 SINE MIR -59 149 3 447 240 192 87 chr4 198715892 198716329 -3612018 + MLT1H LTR MaLR 67 549 0 1744 161 7 0 chr4 198716541 198716853 -3611494 + AluJb SINE Alu 1 314 0 2219 90 13 0 chr4 198716880 198717179 -3611168 + AluSq SINE Alu 1 303 -10 23 33 0 0 chr4 198717238 198717268 -3611079 + AT_rich Low_complexity Low_complexity 1 30 0 30 0 0 0 chr4 198717307 198717337 -3611010 + AT_rich Low_complexity Low_complexity 1 30 0 452 240 26 1 chr4 198717391 198717508 -3610839 + MIR SINE MIR 25 140 -68 2318 70 0 0 chr4 198717611 198717898 -3610449 + AluY SINE Alu 1 287 -24 26 0 0 0 chr4 198717904 198717930 -3610417 + AT_rich Low_complexity Low_complexity 1 26 0 278 302 52 0 chr4 198718480 198718576 -3609771 - MER5B DNA MER1_type -77 101 1 378 0 0 0 chr4 198718750 198718792 -3609555 + (TA)n Simple_repeat Simple_repeat 2 43 0 2107 123 0 0 chr4 198718792 198719076 -3609271 - AluSg SINE Alu -26 284 1 22 0 0 0 chr4 198719960 198719982 -3608365 + AT_rich Low_complexity Low_complexity 1 22 0 4218 210 18 12 chr4 198720466 198721312 -3607035 + MER21B LTR ERV1 2 852 -11 2044 128 0 0 chr4 198722620 198722908 -3605439 + AluSg SINE Alu 1 288 -22 25 0 0 0 chr4 198723295 198723320 -3605027 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr4 198723377 198723411 -3604936 + AT_rich Low_complexity Low_complexity 1 34 0 306 212 20 5 chr4 198723424 198723513 -3604834 + L1ME LINE L1 5663 5753 -368 207 375 12 12 chr4 198723738 198723818 -3604529 - MIR SINE MIR -163 99 20 234 322 70 52 chr4 198724251 198724289 -3604058 - L1MC/D LINE L1 -1888 5920 5883 322 307 51 85 chr4 198724289 198724564 -3603783 - L1ME4a LINE L1 -234 5887 5622 1961 113 18 0 chr4 198724564 198724839 -3603508 + AluSx SINE Alu 1 280 -32 322 307 51 85 chr4 198724839 198724900 -3603447 - L1ME4a LINE L1 -499 5622 5560 267 231 0 0 chr4 198726215 198726267 -3602080 + L2 LINE L2 3261 3312 -1 29 49 0 16 chr4 198726680 198726704 -3601643 + AT_rich Low_complexity Low_complexity 1 24 -36 2549 59 0 3 chr4 198726704 198727011 -3601336 + AluY SINE Alu 1 306 -5 29 49 0 16 chr4 198727011 198727047 -3601300 + AT_rich Low_complexity Low_complexity 24 60 0 739 203 73 26 chr4 198729145 198729337 -3599010 + AluJo SINE Alu 1 201 -111 555 299 53 27 chr4 198729807 198730108 -3598239 - L1MC/D LINE L1 -2122 5686 5378 2150 121 3 0 chr4 198730529 198730818 -3597529 - AluSg SINE Alu -20 290 1 2854 165 34 21 chr4 198731792 198732375 -3595972 - LTR49 LTR ERV1 0 595 5 2262 158 62 7 chr4 198733002 198733408 -3594939 - MSTA LTR MaLR 0 428 1 2341 139 84 2 chr4 198733823 198734275 -3594072 - MER39B LTR ERV1 0 653 165 1845 161 61 33 chr4 198734276 198734667 -3593680 - MER57A LTR ERV1 -1 402 1 2604 119 53 32 chr4 198734671 198735079 -3593268 - MER4D LTR ERV1 0 872 451 2135 114 20 0 chr4 198735079 198735376 -3592971 + AluSg SINE Alu 1 303 -7 2604 119 53 32 chr4 198735376 198735438 -3592909 - MER4D LTR ERV1 -421 451 392 226 213 43 0 chr4 198735438 198735485 -3592862 + L2 LINE L2 3261 3309 -4 2399 211 64 43 chr4 198736145 198736758 -3591589 - L1MB7 LINE L1 -5 6179 5550 563 62 12 12 chr4 198736758 198736838 -3591509 - MADE1 DNA Mariner 0 80 1 2399 211 64 43 chr4 198736838 198736882 -3591465 - L1MB7 LINE L1 -634 5550 5508 599 203 14 21 chr4 198736996 198737139 -3591208 - L1ME4a LINE L1 -617 5561 5420 858 246 30 4 chr4 198737144 198737376 -3590971 - L1ME4a LINE L1 -1237 4909 4672 254 232 74 0 chr4 198737575 198737670 -3590677 + L1MC4 LINE L1 6601 6702 -1340 261 83 0 0 chr4 198737697 198737733 -3590614 + (CA)n Simple_repeat Simple_repeat 2 37 0 382 262 76 55 chr4 198737748 198738023 -3590324 - HAL1 LINE L1 -317 2190 1910 983 168 86 43 chr4 198738241 198738450 -3589897 - AluJb SINE Alu -89 223 6 870 294 80 56 chr4 198738466 198738674 -3589673 - HAL1 LINE L1 -768 1739 1537 2569 34 0 0 chr4 198738674 198738970 -3589377 - AluY SINE Alu -15 296 1 870 294 80 56 chr4 198738970 198739666 -3588681 - HAL1 LINE L1 -970 1537 814 416 194 42 0 chr4 198739674 198739766 -3588581 + AluY SINE Alu 207 301 0 1042 83 8 0 chr4 198740480 198740613 -3587734 - AluSg SINE Alu -176 134 1 2159 70 0 0 chr4 198740890 198741162 -3587185 + AluY SINE Alu 39 310 -1 22 0 0 0 chr4 198741371 198741393 -3586954 + AT_rich Low_complexity Low_complexity 1 22 0 1306 269 49 97 chr4 198741557 198742380 -3585967 - L2 LINE L2 -939 2375 1593 1026 267 100 58 chr4 198743191 198743246 -3585101 - MLT1H1 LTR MaLR -2 553 502 2217 102 0 7 chr4 198743246 198743550 -3584797 + AluSg SINE Alu 4 305 -5 1026 267 100 58 chr4 198743550 198744014 -3584333 - MLT1H1 LTR MaLR -53 502 12 194 355 86 0 chr4 198744258 198744351 -3583996 + L3 LINE CR1 444 544 -1033 2069 189 50 29 chr4 198744736 198745155 -3583192 + MSTA LTR MaLR 1 428 0 241 367 86 13 chr4 198745174 198745487 -3582860 + L3 LINE CR1 856 1191 -386 2290 93 7 3 chr4 198748586 198748896 -3579451 - AluY SINE Alu 0 311 1 582 56 0 0 chr4 198748896 198748968 -3579379 - AluSq/x SINE Alu -176 136 65 299 372 8 0 chr4 198748970 198749091 -3579256 - MIR SINE MIR -113 149 28 328 167 19 0 chr4 198749129 198749183 -3579164 - U7 snRNA snRNA -7 56 2 203 161 0 0 chr4 198749556 198749587 -3578760 + T-rich Low_complexity Low_complexity 4 34 0 30 83 0 0 chr4 198751390 198751462 -3576885 + AT_rich Low_complexity Low_complexity 1 72 0 28 0 0 0 chr4 198751701 198751729 -3576618 + AT_rich Low_complexity Low_complexity 1 28 0 681 294 18 5 chr4 198751736 198751954 -3576393 - L1ME2 LINE L1 -9 6155 5935 386 265 113 16 chr4 198751980 198752165 -3576182 - L1ME2 LINE L1 -286 5876 5674 874 143 0 0 chr4 198752165 198752291 -3576056 - AluSg SINE Alu -184 126 1 194 61 0 30 chr4 198752291 198752324 -3576023 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 626 290 48 7 chr4 198752332 198752570 -3575777 - L1ME2 LINE L1 -518 5644 5417 1760 148 68 0 chr4 198752885 198753181 -3575166 + AluSx SINE Alu 1 314 0 2332 188 31 2 chr4 198753523 198753971 -3574376 - LOR1b LTR ERV1 0 461 1 218 254 30 0 chr4 198754021 198754088 -3574259 + GA-rich Low_complexity Low_complexity 3 71 0 206 233 17 0 chr4 198754092 198754152 -3574195 + G-rich Low_complexity Low_complexity 1 61 0 538 289 168 53 chr4 198754351 198754431 -3573916 + L2 LINE L2 2737 2806 -507 185 0 40 0 chr4 198754431 198754456 -3573891 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 3617 68 2 11 chr4 198754456 198754929 -3573418 - L1PA6 LINE L1 -10 6144 5676 538 289 168 53 chr4 198754929 198755362 -3572985 + L2 LINE L2 2805 3313 0 391 277 80 61 chr4 198756510 198756748 -3571599 - MLT1K LTR MaLR -23 565 316 1626 159 44 68 chr4 198756748 198757132 -3571215 - THE1C LTR MaLR 0 375 1 391 277 80 61 chr4 198757132 198757254 -3571093 - MLT1K LTR MaLR -272 316 198 1273 227 7 13 chr4 198757545 198757844 -3570503 - AluJo SINE Alu -4 308 12 204 158 0 0 chr4 198758201 198758239 -3570108 + (TG)n Simple_repeat Simple_repeat 2 39 0 221 342 90 26 chr4 198761178 198761333 -3567014 - L3 LINE CR1 -4 1573 1409 2370 172 10 5 chr4 198761418 198761836 -3566511 - LOR1b LTR ERV1 0 461 42 226 310 142 4 chr4 198762028 198762226 -3566121 - L3 LINE CR1 -700 877 570 2242 116 3 0 chr4 198762938 198763249 -3565098 - AluSp SINE Alu -1 312 1 306 336 182 34 chr4 198763268 198764456 -3563891 + L2 LINE L2 1449 2812 -502 918 281 75 0 chr4 198764792 198765084 -3563263 + MER46C DNA MER2_type 19 332 -6 1765 128 62 7 chr4 198765175 198765448 -3562899 - AluSx SINE Alu -22 290 3 3685 119 48 137 chr4 198766274 198767433 -3560914 - pTR5 LTR ERV1 -1 2429 1 736 189 105 66 chr4 198767512 198767798 -3560549 - pTR5 LTR ERV1 -1410 1028 732 392 158 13 0 chr4 198767801 198767877 -3560470 + CT-rich Low_complexity Low_complexity 3 79 0 363 177 0 13 chr4 198767889 198767974 -3560373 - FRAM/FAM SINE Alu -84 82 8 25 0 0 0 chr4 198768384 198768409 -3559938 + AT_rich Low_complexity Low_complexity 1 25 0 658 224 0 30 chr4 198768774 198768908 -3559439 + FLAM_A SINE Alu 1 130 -3 32 57 0 0 chr4 198769070 198769123 -3559224 + AT_rich Low_complexity Low_complexity 1 53 0 326 183 0 0 chr4 198772020 198772080 -3556267 - Tigger5 DNA MER2_type 0 2323 2264 257 242 0 0 chr4 198772188 198772250 -3556097 - Tigger5 DNA MER2_type -5 2318 2257 328 138 18 92 chr4 198772451 198772560 -3555787 - LTR41 LTR ERVL -13 760 660 983 252 19 32 chr4 198772845 198773159 -3555188 - MLT2D LTR ERVL -50 364 55 294 175 0 16 chr4 198773214 198773277 -3555070 - MLT2D LTR ERVL -352 62 1 316 250 36 0 chr4 198773294 198773378 -3554969 - LTR41 LTR ERVL -604 169 83 1022 191 165 23 chr4 198773383 198773692 -3554655 + MLT1A1 LTR MaLR 1 353 -12 250 301 119 26 chr4 198774134 198774360 -3553987 + L2 LINE L2 2554 2800 -514 185 302 0 0 chr4 198774469 198774512 -3553835 - L2 LINE L2 -93 3179 3137 1620 225 10 65 chr4 198775116 198775623 -3552724 + L1MC4 LINE L1 7156 7634 -408 270 250 139 9 chr4 198775773 198775881 -3552466 + MLT1J2 LTR MaLR 45 166 -284 364 273 239 19 chr4 198776218 198776427 -3551920 - MIR SINE MIR -2 260 6 472 262 71 0 chr4 198777875 198778058 -3550289 + L1ME3 LINE L1 5635 5830 -332 780 258 47 84 chr4 198778395 198778933 -3549414 + L1ME3A LINE L1 4824 5313 -857 1806 111 0 66 chr4 198778933 198779222 -3549125 + AluSg SINE Alu 30 299 -11 780 258 47 84 chr4 198779222 198779721 -3548626 + L1ME3A LINE L1 5313 5829 -341 1809 162 3 0 chr4 198779949 198780264 -3548083 - L1PB4 LINE L1 -3 6153 5838 227 319 76 35 chr4 198780430 198780574 -3547773 - L2 LINE L2 0 3313 3164 402 378 31 27 chr4 198780631 198780890 -3547457 - L2 LINE L2 -353 2961 2702 2265 61 14 0 chr4 198780912 198781205 -3547142 - L1PA14 LINE L1 -12 6149 5853 9158 159 13 11 chr4 198781305 198782363 -3545984 - L1PA14 LINE L1 -607 5554 4488 2331 107 0 3 chr4 198782363 198782673 -3545674 - AluSc SINE Alu 0 309 1 9158 159 13 11 chr4 198782673 198783641 -3544706 - L1PA14 LINE L1 -1673 4488 3524 338 275 11 11 chr4 198783641 198783732 -3544615 - L2 LINE L2 -590 2724 2634 520 300 40 18 chr4 198783733 198783956 -3544391 + L2 LINE L2 1797 2024 -1290 1255 307 140 43 chr4 198783960 198785030 -3543317 + L2 LINE L2 2152 3309 -4 263 320 125 15 chr4 198785100 198785300 -3543047 - L2 LINE L2 -1722 1592 1371 2392 83 0 16 chr4 198785337 198785650 -3542697 + AluY SINE Alu 1 308 -3 389 294 40 20 chr4 198785661 198785862 -3542485 + L1ME LINE L1 5371 5575 -589 1098 238 12 56 chr4 198786132 198786472 -3541875 - MLT1A2 LTR MaLR 0 374 50 6768 166 84 58 chr4 198786472 198788124 -3540223 + pTR5 LTR ERV1 743 2438 0 2007 130 20 0 chr4 198788220 198788513 -3539834 - AluY SINE Alu -11 300 2 189 224 0 0 chr4 198788703 198788761 -3539586 + GA-rich Low_complexity Low_complexity 3 60 0 2304 110 0 7 chr4 198789255 198789563 -3538784 + AluSx SINE Alu 1 306 -6 293 353 51 6 chr4 198789775 198789931 -3538416 - MIR SINE MIR -55 207 45 2455 164 42 6 chr4 198791613 198792114 -3536233 - L1MA8 LINE L1 -2 6289 5771 201 74 0 0 chr4 198792141 198792168 -3536179 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5252 143 20 2 chr4 198792170 198793559 -3534788 - L1PA15 LINE L1 -10 6155 4739 870 208 0 34 chr4 198793566 198793802 -3534545 - L1PA15 LINE L1 -1481 4665 4438 900 275 63 15 chr4 198793813 198794224 -3534123 + LTR16B LTR ERVL 34 464 0 2453 179 14 69 chr4 198794532 198795136 -3533211 - L1MA7 LINE L1 -2 6289 5724 4926 61 8 0 chr4 198795136 198795760 -3532587 - L1PA7 LINE L1 -14 6140 5512 2453 179 14 69 chr4 198795760 198795820 -3532527 - L1MA7 LINE L1 -567 5724 5662 358 242 141 0 chr4 198795862 198795961 -3532386 + FLAM_A SINE Alu 4 116 -17 603 269 6 0 chr4 198795984 198796296 -3532051 + (CATATA)n Simple_repeat Simple_repeat 1 314 0 303 259 47 0 chr4 198796341 198796426 -3531921 - L1MC4 LINE L1 -1339 6703 6615 375 269 0 0 chr4 198796427 198796546 -3531801 + (CATATA)n Simple_repeat Simple_repeat 6 124 0 1728 177 16 3 chr4 198796546 198796914 -3531433 + L1M2 LINE L1 5280 5652 -639 26 30 0 0 chr4 198797361 198797394 -3530953 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr4 198797792 198797813 -3530534 + AT_rich Low_complexity Low_complexity 1 21 0 2524 30 7 3 chr4 198797822 198798123 -3530224 + AluY SINE Alu 1 302 -9 469 44 29 0 chr4 198799538 198799606 -3528741 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 1269 216 130 33 chr4 198799615 198799976 -3528371 - MSTD LTR MaLR 0 396 1 222 136 0 0 chr4 198800004 198800048 -3528299 + (GA)n Simple_repeat Simple_repeat 1 44 0 24 0 0 0 chr4 198801130 198801154 -3527193 + AT_rich Low_complexity Low_complexity 1 24 0 11928 184 49 28 chr4 198801958 198802657 -3525690 - L1PB1 LINE L1 0 6867 6184 2298 137 28 14 chr4 198802657 198803016 -3525331 - THE1B LTR MaLR 0 364 1 11928 184 49 28 chr4 198803016 198805478 -3522869 - L1PB1 LINE L1 -683 6184 3774 2108 87 55 3 chr4 198805478 198805767 -3522580 - AluY SINE Alu -7 304 1 11928 184 49 28 chr4 198805767 198808129 -3520218 - L1PB1 LINE L1 -3093 3774 1073 2132 78 24 20 chr4 198808129 198808422 -3519925 - AluY SINE Alu -12 299 6 11928 184 49 28 chr4 198808422 198808868 -3519479 - L1PB1 LINE L1 -5794 1073 638 1011 171 0 5 chr4 198808873 198809072 -3519275 - L1PB1 LINE L1 -6663 200 3 404 309 143 28 chr4 198809076 198809328 -3519019 - L2 LINE L2 -10 3303 3023 2136 127 0 0 chr4 198809964 198810255 -3518092 + AluSx SINE Alu 1 291 -21 23 0 0 0 chr4 198810255 198810278 -3518069 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr4 198812273 198812299 -3516048 + (A)n Simple_repeat Simple_repeat 1 26 0 2402 67 3 0 chr4 198813917 198814214 -3514133 + AluY SINE Alu 3 300 -11 2426 65 0 0 chr4 198814403 198814694 -3513653 - AluY SINE Alu -20 291 1 1489 205 163 16 chr4 198814898 198815230 -3513117 - MLT1D LTR MaLR 0 505 93 483 221 16 24 chr4 198815230 198815357 -3512990 + FLAM_A SINE Alu 4 129 -4 1489 205 163 16 chr4 198815357 198815459 -3512888 - MLT1D LTR MaLR -412 93 7 487 278 29 19 chr4 198815506 198815715 -3512632 - L1M4 LINE L1 -2393 3753 3543 822 239 31 25 chr4 198815932 198816288 -3512059 - L1M4 LINE L1 -2922 3224 2867 934 233 102 37 chr4 198816353 198816757 -3511590 + L1M4 LINE L1 3846 4275 -1871 4027 84 9 0 chr4 198816815 198817365 -3510982 - L1PA12 LINE L1 -3 6165 5611 2440 84 0 0 chr4 198817381 198817692 -3510655 - AluY SINE Alu 0 311 1 25 0 0 0 chr4 198817705 198817730 -3510617 + AT_rich Low_complexity Low_complexity 1 25 0 293 244 12 0 chr4 198817760 198817842 -3510505 + L1M4 LINE L1 4777 4859 -1287 * 531 124 113 0 chr4 198817836 198817933 -3510414 - L1MC/D LINE L1 -817 5527 5420 * 1823 222 77 53 chr4 198817917 198818669 -3509678 - L1MC/D LINE L1 -1194 4952 4183 22 35 0 0 chr4 198818691 198818720 -3509627 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 198819934 198819956 -3508391 + AT_rich Low_complexity Low_complexity 1 22 0 219 220 0 0 chr4 198821069 198821119 -3507228 + (TA)n Simple_repeat Simple_repeat 2 51 0 191 274 89 68 chr4 198822878 198823024 -3505323 - L3 LINE CR1 -64 1513 1365 1138 219 18 36 chr4 198823033 198823311 -3505036 + MSTB LTR MaLR 4 276 -150 243 0 0 0 chr4 198823813 198823840 -3504507 + (A)n Simple_repeat Simple_repeat 1 27 0 2226 98 7 3 chr4 198825054 198825359 -3502988 + AluY SINE Alu 1 306 -5 326 232 0 29 chr4 198831451 198831589 -3496758 + CT-rich Low_complexity Low_complexity 1 134 0 354 191 0 143 chr4 198831954 198832059 -3496288 + MER21B LTR ERV1 1 90 -773 2252 231 140 30 chr4 198832081 198832739 -3495608 + MER21B LTR ERV1 20 749 -114 2074 125 14 0 chr4 198832774 198833069 -3495278 + AluY SINE Alu 1 299 -12 799 315 51 26 chr4 198834945 198835336 -3493011 + MLT1J1 LTR MaLR 34 434 -12 527 289 29 0 chr4 198836439 198836612 -3491735 + MER97a DNA MER1_type? 2 179 -715 609 278 75 97 chr4 198836767 198837481 -3490866 - L2 LINE L2 -7 3306 2618 1084 209 54 4 chr4 198837507 198837785 -3490562 + MER33 DNA MER1_type 20 311 -13 642 262 81 19 chr4 198837787 198837997 -3490350 - L2 LINE L2 -756 2558 2336 472 252 99 27 chr4 198838482 198838704 -3489643 - MER74B LTR ERVL -320 302 65 210 245 0 0 chr4 198838818 198838867 -3489480 + (CA)n Simple_repeat Simple_repeat 2 50 0 435 317 0 0 chr4 198838935 198839115 -3489232 + (CA)n Simple_repeat Simple_repeat 1 180 0 406 281 5 27 chr4 198839176 198839689 -3488658 + (CA)n Simple_repeat Simple_repeat 1 502 0 238 343 11 6 chr4 198839651 198839829 -3488518 + (CAGA)n Simple_repeat Simple_repeat 1 179 0 * 369 299 0 24 chr4 198839895 198840133 -3488214 + (CACG)n Simple_repeat Simple_repeat 1 232 0 * 440 276 0 32 chr4 198840122 198840307 -3488040 + (CA)n Simple_repeat Simple_repeat 1 179 0 191 267 0 8 chr4 198840318 198840449 -3487898 + (CA)n Simple_repeat Simple_repeat 1 130 0 1764 158 11 38 chr4 198841378 198841660 -3486687 - L1MC1 LINE L1 -6 6327 6054 13227 163 11 33 chr4 198841660 198844132 -3484215 + Tigger1 DNA MER2_type 1 2418 0 1764 158 11 38 chr4 198844132 198844196 -3484151 - L1MC1 LINE L1 -279 6054 5990 306 0 0 0 chr4 198844222 198844256 -3484091 + (TG)n Simple_repeat Simple_repeat 1 34 0 186 103 0 0 chr4 198844267 198844296 -3484051 + (GA)n Simple_repeat Simple_repeat 1 29 0 2375 62 0 0 chr4 198845274 198845562 -3482785 + AluY SINE Alu 1 288 -23 279 0 0 0 chr4 198845571 198845602 -3482745 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 226 202 36 83 chr4 198847225 198847309 -3481038 + MLT1J LTR MaLR 11 90 -421 254 28 0 28 chr4 198847445 198847481 -3480866 + (TAA)n Simple_repeat Simple_repeat 2 36 0 247 298 30 53 chr4 198847509 198847640 -3480707 + MLT1J1 LTR MaLR 250 377 -69 367 336 89 21 chr4 198847895 198848130 -3480217 - L1MC1 LINE L1 -1875 5933 5683 353 362 32 0 chr4 198848205 198848477 -3479870 - L1MC1 LINE L1 -547 5574 5292 202 204 45 0 chr4 198848496 198848540 -3479807 + (CATA)n Simple_repeat Simple_repeat 1 46 0 315 311 79 28 chr4 198848790 198848967 -3479380 - L1MC1 LINE L1 -1162 4984 4799 202 267 0 40 chr4 198849189 198849290 -3479057 + A-rich Low_complexity Low_complexity 5 101 0 22 56 0 0 chr4 198850334 198850370 -3477977 + AT_rich Low_complexity Low_complexity 1 36 0 1929 220 84 18 chr4 198851189 198851919 -3476428 - L1M4 LINE L1 -377 5797 5028 1900 249 29 22 chr4 198851913 198852499 -3475848 - L1M4 LINE L1 -1726 4420 3831 * 709 167 34 27 chr4 198852505 198852768 -3475579 + L1MD1 LINE L1 5908 6242 0 232 121 0 0 chr4 198852850 198852883 -3475464 + L2 LINE L2 3262 3294 -19 33 73 0 0 chr4 198854510 198854578 -3473769 + AT_rich Low_complexity Low_complexity 1 68 0 2374 255 102 69 chr4 198858251 198860038 -3468309 - L1MC4 LINE L1 -12 8030 6049 1080 215 112 58 chr4 198860038 198860448 -3467899 + MSTB1 LTR MaLR 1 432 0 2374 255 102 69 chr4 198860448 198861251 -3467096 - L1MC4 LINE L1 -1993 6049 5274 314 311 72 28 chr4 198861311 198861674 -3466673 - L1MC4 LINE L1 -884 5262 4884 2495 222 70 12 chr4 198861819 198861988 -3466359 - L1MB1 LINE L1 -5 6163 6005 1307 92 97 37 chr4 198861988 198862205 -3466142 - MER30 DNA MER1_type 0 230 1 2495 222 70 12 chr4 198862205 198862675 -3465672 - L1MB1 LINE L1 -163 6005 5487 5201 176 23 20 chr4 198862695 198863507 -3464840 - L1MA4A LINE L1 -6 6297 5489 1941 122 28 0 chr4 198863507 198863794 -3464553 - AluSp SINE Alu -14 299 5 5201 176 23 20 chr4 198863794 198864978 -3463369 - L1MA4A LINE L1 -814 5489 4295 4539 71 40 17 chr4 198864978 198866079 -3462268 + MER11A LTR ERVK 1 1266 0 2354 181 2 5 chr4 198866079 198866520 -3461827 - L1MA4A LINE L1 -1846 4300 3861 738 224 6 6 chr4 198866557 198866740 -3461607 + L1 LINE L1 3700 3882 -2264 484 237 42 0 chr4 198867666 198867784 -3460563 - L1MA10 LINE L1 -8 6326 6204 23 78 0 0 chr4 198868662 198868713 -3459634 + AT_rich Low_complexity Low_complexity 1 51 0 202 333 43 0 chr4 198868845 198868914 -3459433 + L2 LINE L2 3240 3311 -2 222 258 30 0 chr4 198869285 198869351 -3458996 + CT-rich Low_complexity Low_complexity 2 69 0 254 400 35 31 chr4 198870102 198870362 -3457985 + MIR SINE MIR 1 261 -1 1912 294 84 37 chr4 198870415 198871924 -3456423 + L1ME LINE L1 20 1602 -4478 1357 207 3 40 chr4 198872017 198872317 -3456030 - AluJb SINE Alu -21 291 3 399 262 33 25 chr4 198872354 198872504 -3455843 + L1ME LINE L1 3129 3286 -2794 2345 85 10 0 chr4 198872504 198872810 -3455537 + AluSp SINE Alu 2 310 -3 399 262 33 25 chr4 198872810 198872883 -3455464 + L1ME LINE L1 3286 3357 -2723 296 241 25 25 chr4 198872936 198873147 -3455200 + (TTAA)n Simple_repeat Simple_repeat 1 211 0 5808 84 32 1 chr4 198873186 198873995 -3454352 - L1PA7 LINE L1 0 6154 5321 13779 101 5 0 chr4 198874095 198876095 -3452252 - L1PA7 LINE L1 -805 5341 3332 1110 267 84 16 chr4 198876783 198877154 -3451193 + MSTD LTR MaLR 1 396 0 2367 164 16 16 chr4 198877631 198878064 -3450283 + Tigger2a DNA MER2_type 2 434 0 2792 168 18 8 chr4 198880618 198881112 -3447235 + Tigger1 DNA MER2_type 1920 2418 0 270 294 39 33 chr4 198882218 198882371 -3445976 - L1MD3 LINE L1 -5 7990 7837 369 0 0 0 chr4 198882591 198882632 -3445715 + (TG)n Simple_repeat Simple_repeat 2 42 0 205 294 12 12 chr4 198882632 198882717 -3445630 + (TA)n Simple_repeat Simple_repeat 2 86 0 221 179 0 18 chr4 198882735 198882791 -3445556 + (TA)n Simple_repeat Simple_repeat 2 56 0 288 0 0 0 chr4 198882791 198882823 -3445524 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 990 118 53 0 chr4 198882823 198882962 -3445385 - AluSg/x SINE Alu -32 280 131 1883 78 108 0 chr4 198882962 198883230 -3445117 - AluSg SINE Alu -13 297 1 990 118 53 0 chr4 198883230 198883242 -3445105 - AluSg/x SINE Alu -181 131 121 706 332 50 6 chr4 198884145 198884467 -3443880 + MLT1H1 LTR MaLR 186 521 -34 1854 172 0 0 chr4 198884931 198885222 -3443125 - AluJb SINE Alu -21 291 1 183 255 132 57 chr4 198885642 198885748 -3442599 - MIR3 SINE MIR -16 192 79 32 0 0 0 chr4 198885773 198885805 -3442542 + AT_rich Low_complexity Low_complexity 1 32 0 263 315 47 31 chr4 198886042 198886169 -3442178 - MIR SINE MIR -46 216 88 482 288 47 6 chr4 198886581 198886751 -3441596 + MER5B DNA MER1_type 1 177 -1 22 35 0 0 chr4 198888230 198888259 -3440088 + AT_rich Low_complexity Low_complexity 1 29 0 1970 108 8 0 chr4 198888442 198888741 -3439606 + AluSx SINE Alu 14 314 0 677 82 91 0 chr4 198889485 198889595 -3438752 + L1MA3 LINE L1 6185 6304 -1 23 33 0 0 chr4 198891502 198891532 -3436815 + AT_rich Low_complexity Low_complexity 1 30 0 409 348 60 36 chr4 198892416 198892666 -3435681 - MIR SINE MIR -4 258 3 449 85 51 45 chr4 198893050 198893226 -3435121 + (TATAA)n Simple_repeat Simple_repeat 3 179 0 321 180 60 0 chr4 198893235 198893335 -3435012 + (TA)n Simple_repeat Simple_repeat 1 106 0 31 0 0 0 chr4 198943682 198943713 -3384634 + AT_rich Low_complexity Low_complexity 1 31 0 36 40 0 0 chr4 198944040 198944090 -3384257 + AT_rich Low_complexity Low_complexity 1 50 0 515 301 70 70 chr4 198945186 198945674 -3382673 - L3 LINE CR1 -174 1403 916 328 236 0 38 chr4 198945903 198946009 -3382338 + L1MA9 LINE L1 6137 6238 -74 468 157 17 9 chr4 198946009 198946124 -3382223 + (TA)n Simple_repeat Simple_repeat 2 117 0 269 64 56 19 chr4 198946135 198946196 -3382151 + L1MA9 LINE L1 6224 6291 0 220 293 35 27 chr4 198946322 198946459 -3381888 - MIR SINE MIR -61 147 34 309 289 132 31 chr4 198946596 198946755 -3381592 + MIR SINE MIR 84 258 -4 24 32 0 0 chr4 198947866 198947897 -3380450 + AT_rich Low_complexity Low_complexity 1 31 0 650 244 87 35 chr4 198948162 198948391 -3379956 + MIR SINE MIR 5 245 -17 501 66 0 13 chr4 198948463 198948539 -3379808 + Alu SINE Alu 1 75 -235 1796 207 10 21 chr4 198948744 198949130 -3379217 + MLT1B LTR MaLR 1 382 -8 30 27 0 0 chr4 198950722 198950759 -3377588 + AT_rich Low_complexity Low_complexity 1 37 0 207 321 0 0 chr4 198951979 198952119 -3376228 + (TA)n Simple_repeat Simple_repeat 1 140 0 240 284 0 23 chr4 198952141 198952229 -3376118 + L1MC4 LINE L1 6615 6700 -1342 1915 171 0 0 chr4 198952997 198953296 -3375051 - AluSx SINE Alu -13 299 1 22 0 0 0 chr4 198953813 198953835 -3374512 + AT_rich Low_complexity Low_complexity 1 22 0 535 149 0 21 chr4 198953849 198953943 -3374404 - FRAM SINE Alu -14 162 71 8948 107 17 21 chr4 198954122 198955562 -3372785 + HUERS-P1 LTR ERV1 2861 4295 -1968 265 339 73 0 chr4 198955730 198955839 -3372508 + MIR SINE MIR 59 175 -87 1027 291 55 25 chr4 198956969 198957570 -3370777 - L1MEc LINE L1 -3325 2890 2272 246 268 63 0 chr4 198957665 198957807 -3370540 - L1MEc LINE L1 -4162 2234 2084 725 177 0 8 chr4 198960058 198960182 -3368165 - FLAM_C SINE Alu -16 127 5 327 204 0 92 chr4 198960191 198960289 -3368058 - MER34 LTR ERV1 -450 92 4 426 227 35 41 chr4 198960408 198960580 -3367767 + LTR49-int LTR ERV1 1753 1923 -3013 3032 207 73 70 chr4 198960639 198962369 -3365978 + LTR49-int LTR ERV1 2202 5094 -1237 1698 175 59 3 chr4 198964776 198965344 -3363003 - L1P5 LINE L1 -674 5477 4885 250 260 14 0 chr4 198965422 198965495 -3362852 - MER103 DNA DNA -77 89 16 766 246 22 36 chr4 198967754 198967978 -3360369 + Charlie1 DNA MER1_type 1426 1646 -1115 22 35 0 0 chr4 198968052 198968081 -3360266 + AT_rich Low_complexity Low_complexity 1 29 0 309 298 43 7 chr4 198968153 198968294 -3360053 - L1MEc LINE L1 -5053 1152 1007 668 302 78 77 chr4 198968391 198968704 -3359643 - L1MEc LINE L1 -5408 797 486 1803 149 59 12 chr4 198968704 198969026 -3359321 - MER1B DNA MER1_type 0 337 1 668 302 78 77 chr4 198969026 198969401 -3358946 - L1MEc LINE L1 -5719 486 108 2298 62 0 7 chr4 198970330 198970638 -3357709 - AluY SINE Alu -5 306 1 206 31 0 31 chr4 198971540 198971572 -3356775 + (TTTAA)n Simple_repeat Simple_repeat 3 33 0 283 299 8 17 chr4 198972638 198972755 -3355592 - MER94 DNA DNA -16 118 3 2119 105 0 0 chr4 198972775 198973052 -3355295 + AluSc SINE Alu 1 277 -32 267 31 0 0 chr4 198973055 198973087 -3355260 + (GGAA)n Simple_repeat Simple_repeat 3 34 0 24 67 0 0 chr4 198974083 198974128 -3354219 + AT_rich Low_complexity Low_complexity 1 45 0 206 143 61 0 chr4 198974414 198974463 -3353884 + (TA)n Simple_repeat Simple_repeat 1 52 0 1735 135 21 31 chr4 198974463 198974752 -3353595 - AluSx SINE Alu -26 286 1 629 84 0 21 chr4 198975496 198975591 -3352756 + L1PA8 LINE L1 6073 6165 -7 193 133 44 67 chr4 198975855 198975900 -3352447 - L3 LINE CR1 -369 1208 1165 535 282 103 26 chr4 198976136 198976600 -3351747 + L1M4 LINE L1 3537 4036 -2110 230 204 0 0 chr4 198976619 198976668 -3351679 + L1ME3 LINE L1 6106 6154 -8 1840 97 0 0 chr4 198976905 198977152 -3351195 - AluSc SINE Alu -1 308 62 273 263 88 62 chr4 198977192 198977352 -3350995 + MLT1H LTR MaLR 10 173 -376 256 221 70 0 chr4 198977510 198977596 -3350751 + MLT1H LTR MaLR 458 549 0 333 327 39 7 chr4 198977677 198977830 -3350517 - L1MEc LINE L1 -3795 2420 2263 2368 66 0 0 chr4 198978426 198978800 -3349547 - L1P3 LINE L1 -581 5573 5200 375 203 42 0 chr4 198978901 198979004 -3349343 - L1MEc LINE L1 -3951 2264 2181 228 325 125 12 chr4 198979274 198979434 -3348913 - MLT1K LTR MaLR -256 332 155 553 288 100 25 chr4 198979886 198980126 -3348221 + MLT1G1 LTR MaLR 43 300 -295 776 254 0 9 chr4 198980242 198980462 -3347885 + MER65-int LTR ERV1 3894 4111 -760 327 215 0 0 chr4 198980493 198980558 -3347789 + MER65-int LTR ERV1 4110 4174 -697 1319 262 104 19 chr4 198980652 198981125 -3347222 + MER65-int LTR ERV1 6614 7126 -411 1314 169 88 9 chr4 198981126 198981512 -3346835 + LTR54 LTR ERV1 31 509 -1 1565 157 4 0 chr4 198982640 198982875 -3345472 - AluJb SINE Alu -76 236 1 315 71 0 0 chr4 198984724 198984766 -3343581 + (TG)n Simple_repeat Simple_repeat 1 42 0 1976 89 4 0 chr4 198984767 198985025 -3343322 - AluY SINE Alu -52 259 1 22 0 0 0 chr4 198985510 198985532 -3342815 + AT_rich Low_complexity Low_complexity 1 22 0 487 254 46 0 chr4 198986541 198986671 -3341676 - LTR23-int LTR ERV1 -2452 4306 4171 2239 111 0 3 chr4 198986870 198987167 -3341180 - AluY SINE Alu -15 296 1 531 224 7 14 chr4 198987219 198987366 -3340981 - LTR23-int LTR ERV1 -4119 1004 859 3739 120 2 14 chr4 198987570 198988163 -3340184 - LTR8 LTR ERV1 -105 586 1 4585 130 4 17 chr4 198988163 198989562 -3338785 - HUERS-P1 LTR ERV1 0 6263 4789 1391 133 34 0 chr4 198989677 198989910 -3338437 - LTR23-int LTR ERV1 -3593 2353 2113 698 283 96 34 chr4 198990420 198990773 -3337574 - LTR33 LTR ERVL -136 385 11 238 227 0 21 chr4 198991032 198991129 -3337218 - L1M LINE L1 -2408 5400 5306 362 288 115 52 chr4 198991155 198991815 -3336532 - L1MEd LINE L1 -3111 3271 2562 371 381 39 22 chr4 198991972 198992284 -3336063 - L1MEd LINE L1 -4701 1683 1367 189 121 0 0 chr4 198992293 198992326 -3336021 + (TG)n Simple_repeat Simple_repeat 2 34 0 370 316 122 21 chr4 198992367 198992604 -3335743 - L1MEd LINE L1 -4988 1384 1124 580 164 0 10 chr4 198992627 198992731 -3335616 - LTR62 LTR ERVK -2 717 615 717 244 39 13 chr4 198994441 198994675 -3333672 + MER65B LTR ERV1 292 531 0 2289 86 3 26 chr4 198995302 198995605 -3332742 + AluY SINE Alu 1 296 -15 2136 119 47 39 chr4 198995756 198996117 -3332230 - THE1B LTR MaLR 0 364 1 2032 132 3 0 chr4 198996151 198996446 -3331901 + AluSx SINE Alu 11 306 -6 1845 171 3 28 chr4 198996925 198997288 -3331059 + MER47A DNA MER2_type 13 366 0 1030 232 149 7 chr4 198998870 198999159 -3329188 - MER21B LTR ERV1 -514 349 20 338 250 0 12 chr4 198999181 198999261 -3329086 - MER21B LTR ERV1 -773 90 12 326 232 0 29 chr4 198999649 198999787 -3328560 + GA-rich Low_complexity Low_complexity 1 134 0 471 273 131 32 chr4 199002485 199002836 -3325511 + L2 LINE L2 2688 3068 -245 357 302 16 24 chr4 199002838 199002964 -3325383 + L2 LINE L2 3169 3293 -20 234 318 40 32 chr4 199003647 199003773 -3324574 + L2 LINE L2 2368 2494 -820 341 118 0 0 chr4 199004545 199004596 -3323751 + MSTA LTR MaLR 1 51 -377 2167 92 4 4 chr4 199004764 199005070 -3323277 + AluSp SINE Alu 2 307 0 2283 117 0 0 chr4 199005980 199006289 -3322058 + AluY SINE Alu 1 309 -2 450 203 0 0 chr4 199007218 199007297 -3321050 - MER2 DNA MER2_type -266 79 1 694 257 72 28 chr4 199008523 199009040 -3319307 + L1MEc LINE L1 2200 2698 -3517 1194 93 132 0 chr4 199009073 199009277 -3319070 - L1PA10 LINE L1 0 6168 5938 357 119 0 0 chr4 199009288 199009347 -3319000 + AluJb SINE Alu 208 266 -36 7946 154 42 17 chr4 199009355 199010919 -3317428 - L1P LINE L1 -1837 4309 2708 2312 251 52 23 chr4 199010919 199011934 -3316413 + L1MEc LINE L1 2745 3790 -2425 466 293 55 30 chr4 199014247 199014411 -3313936 + MIR SINE MIR 8 175 -87 2168 34 34 0 chr4 199014784 199015053 -3313294 + AluY SINE Alu 1 278 -33 239 53 0 26 chr4 199015053 199015091 -3313256 + (CAA)n Simple_repeat Simple_repeat 1 37 0 197 306 16 32 chr4 199016410 199016472 -3311875 + L2 LINE L2 3115 3175 -97 2206 116 0 25 chr4 199016616 199016935 -3311412 + AluSq SINE Alu 1 311 -2 22 0 0 0 chr4 199016964 199016986 -3311361 + AT_rich Low_complexity Low_complexity 1 22 0 386 262 117 38 chr4 199017200 199017443 -3310904 - L1ME3A LINE L1 -33 6131 5874 228 273 0 0 chr4 199017443 199017498 -3310849 + T-rich Low_complexity Low_complexity 1 55 0 363 333 43 18 chr4 199017500 199017782 -3310565 - L1ME3A LINE L1 -272 5898 5610 425 262 50 25 chr4 199017840 199018063 -3310284 - L1M3 LINE L1 -664 5514 5288 24 67 0 0 chr4 199018411 199018456 -3309891 + AT_rich Low_complexity Low_complexity 1 45 0 332 299 94 26 chr4 199018511 199018745 -3309602 - L1M3 LINE L1 -1198 4948 4699 1391 175 7 82 chr4 199019055 199019397 -3308950 + AluJb SINE Alu 3 321 0 192 306 0 0 chr4 199020085 199020134 -3308213 + L2 LINE L2 309 357 -2957 678 248 34 70 chr4 199020886 199021069 -3307278 + L1MCc LINE L1 17 186 -6237 2110 53 3 147 chr4 199021069 199021430 -3306917 + AluY SINE Alu 1 309 -2 678 248 34 70 chr4 199021430 199021544 -3306803 + L1MCc LINE L1 186 303 -6120 475 285 25 10 chr4 199021577 199021777 -3306570 + L1MCc LINE L1 2242 2444 -4678 909 113 0 149 chr4 199021780 199021974 -3306373 + AluSg/x SINE Alu 137 301 -11 489 285 96 0 chr4 199022071 199022341 -3306006 + L1MCc LINE L1 2575 2870 -4252 1590 250 92 13 chr4 199023010 199023607 -3304740 - L1ME2 LINE L1 -23 6141 5498 207 0 0 0 chr4 199023714 199023737 -3304610 + (T)n Simple_repeat Simple_repeat 1 23 0 302 297 19 77 chr4 199024109 199024264 -3304083 + MIR SINE MIR 97 242 -20 268 226 16 16 chr4 199026360 199026422 -3301925 - MIR SINE MIR -138 124 63 2400 91 7 3 chr4 199027305 199027613 -3300734 - AluSx SINE Alu -3 309 1 181 282 197 0 chr4 199027787 199027858 -3300489 + MIR SINE MIR 1 85 -177 1117 286 72 22 chr4 199027910 199028494 -3299853 - HsTC2 DNA Tc2 -14 1884 1272 1492 230 14 0 chr4 199028532 199028819 -3299528 + AluJo SINE Alu 1 291 -21 14658 125 82 8 chr4 199028852 199031547 -3296800 + L1PBa LINE L1 1 2895 -3968 334 204 19 0 chr4 199031744 199031847 -3296500 + (TA)n Simple_repeat Simple_repeat 2 106 0 3929 144 35 20 chr4 199031847 199032539 -3295808 - MER57B-int LTR ERV1 -4301 1645 944 3483 143 25 2 chr4 199032549 199033108 -3295239 - MER57B-int LTR ERV1 -6872 665 94 340 152 61 15 chr4 199033098 199033164 -3295183 - MER57B-int LTR ERV1 -7375 162 94 * 340 152 61 15 chr4 199033154 199033220 -3295127 - MER57B-int LTR ERV1 -7375 162 94 340 152 61 15 chr4 199033210 199033276 -3295071 - MER57B-int LTR ERV1 -7375 162 94 340 152 61 15 chr4 199033266 199033332 -3295015 - MER57B-int LTR ERV1 -7375 162 94 * 361 136 61 15 chr4 199033322 199033388 -3294959 - MER57B-int LTR ERV1 -7375 162 94 * 558 136 0 11 chr4 199033378 199033466 -3294881 - MER57B-int LTR ERV1 -7375 162 76 385 119 0 17 chr4 199033474 199033533 -3294814 - MER57B-int LTR ERV1 -7403 134 77 688 191 15 7 chr4 199033539 199033675 -3294672 - MER57B-int LTR ERV1 -7400 137 1 2741 99 38 9 chr4 199033675 199034097 -3294250 - MER57B LTR ERV1 0 434 1 622 296 117 68 chr4 199034592 199034987 -3293360 - L2 LINE L2 -1 3312 2899 233 29 29 0 chr4 199037447 199037481 -3290866 + (TA)n Simple_repeat Simple_repeat 2 36 0 429 252 102 0 chr4 199038032 199038159 -3290188 + MIR SINE MIR 100 239 -23 2810 185 63 92 chr4 199038391 199039197 -3289150 - LTR39 LTR ERV1 0 783 1 21 0 0 0 chr4 199040433 199040454 -3287893 + AT_rich Low_complexity Low_complexity 1 21 0 415 325 25 25 chr4 199041060 199041217 -3287130 - MER5A DNA MER1_type -7 182 26 360 289 86 0 chr4 199041288 199041416 -3286931 - MIR SINE MIR -4 258 120 183 143 82 41 chr4 199041476 199041525 -3286822 + MIR3 SINE MIR 121 171 -37 300 137 42 42 chr4 199041925 199042020 -3286327 + (TATAA)n Simple_repeat Simple_repeat 5 99 0 710 209 0 0 chr4 199042027 199042156 -3286191 - FLAM_C SINE Alu -14 129 1 207 69 0 0 chr4 199042639 199042668 -3285679 + (CAA)n Simple_repeat Simple_repeat 2 30 0 515 325 5 38 chr4 199042910 199043122 -3285225 + MIR SINE MIR 48 252 -10 2150 116 19 66 chr4 199044547 199044758 -3283589 - THE1B LTR MaLR -4 360 172 2173 71 0 0 chr4 199044758 199045047 -3283300 + AluY SINE Alu 17 305 0 2150 116 19 66 chr4 199045047 199045212 -3283135 - THE1B LTR MaLR -192 172 1 712 301 52 34 chr4 199045857 199046239 -3282108 - MLT1J1 LTR MaLR -12 434 46 2098 134 13 0 chr4 199048117 199048422 -3279925 - AluY SINE Alu -2 309 1 1094 219 147 10 chr4 199048457 199048749 -3279598 - MER21B LTR ERV1 -114 749 418 23 54 0 0 chr4 199048985 199049022 -3279325 + AT_rich Low_complexity Low_complexity 1 37 0 8442 163 7 5 chr4 199049192 199050036 -3278311 - L1PA11 LINE L1 -17 7595 6754 2582 64 0 0 chr4 199050036 199050347 -3278000 - AluY SINE Alu 0 311 1 8442 163 7 5 chr4 199050347 199051832 -3276515 - L1PA11 LINE L1 -858 6754 5261 1958 168 0 0 chr4 199051832 199052117 -3276230 - AluSx SINE Alu -27 285 1 5701 223 34 31 chr4 199052117 199053979 -3274368 - L1PA11 LINE L1 -3710 3874 1188 2643 187 16 62 chr4 199053979 199054621 -3273726 + LTR9 LTR ERV1 1 612 0 5701 223 34 31 chr4 199054621 199055596 -3272751 - L1PA11 LINE L1 -6396 1188 217 38 96 0 0 chr4 199055681 199055796 -3272551 + AT_rich Low_complexity Low_complexity 1 115 0 294 137 20 0 chr4 199055944 199055995 -3272352 + Tigger1 DNA MER2_type 1 52 -2366 6714 137 26 15 chr4 199056097 199057178 -3271169 + Tigger1 DNA MER2_type 372 1469 -949 2033 134 0 20 chr4 199057178 199057483 -3270864 + AluSx SINE Alu 13 311 -1 6714 137 26 15 chr4 199057483 199057601 -3270746 + Tigger1 DNA MER2_type 1469 1584 -834 2576 30 0 0 chr4 199059170 199059467 -3268880 - AluY SINE Alu -14 297 1 22 0 0 0 chr4 199060006 199060028 -3268319 + AT_rich Low_complexity Low_complexity 1 22 0 522 220 0 10 chr4 199060498 199060598 -3267749 - FLAM_C SINE Alu -33 110 12 1963 149 3 3 chr4 199060672 199060968 -3267379 - AluSx SINE Alu -16 296 1 1307 208 63 40 chr4 199061672 199062051 -3266296 + MLT1B LTR MaLR 1 388 -2 1804 144 3 17 chr4 199062235 199062527 -3265820 - AluSx SINE Alu -24 288 1 211 150 0 25 chr4 199062570 199062610 -3265737 + (TAA)n Simple_repeat Simple_repeat 1 39 0 235 265 36 24 chr4 199062727 199062810 -3265537 - MIR SINE MIR -105 157 74 283 364 8 8 chr4 199062922 199063040 -3265307 - MIR3 SINE MIR -51 157 40 31 26 0 0 chr4 199063326 199063364 -3264983 + AT_rich Low_complexity Low_complexity 1 38 0 2225 115 7 0 chr4 199063435 199063740 -3264607 - AluSg SINE Alu -3 307 1 40 79 0 0 chr4 199064592 199064681 -3263666 + AT_rich Low_complexity Low_complexity 1 89 0 2243 116 0 3 chr4 199065305 199065616 -3262731 + AluSg SINE Alu 1 310 0 24 0 0 0 chr4 199065949 199065973 -3262374 + AT_rich Low_complexity Low_complexity 1 24 0 1491 172 69 11 chr4 199067642 199067991 -3260356 + LOR1b LTR ERV1 1 369 -92 374 231 139 0 chr4 199068184 199068292 -3260055 + L2 LINE L2 3191 3313 0 190 357 198 19 chr4 199068403 199068560 -3259787 - MIR SINE MIR -24 238 54 274 275 33 11 chr4 199069840 199069931 -3258416 + MLT1J LTR MaLR 94 186 -325 202 154 26 0 chr4 199070082 199070121 -3258226 + (TAA)n Simple_repeat Simple_repeat 3 42 0 1163 115 88 10 chr4 199070525 199070717 -3257630 - MER30 DNA MER1_type -5 225 19 442 297 58 48 chr4 199070717 199071010 -3257337 - L2 LINE L2 -73 3240 2945 488 266 42 62 chr4 199071039 199071328 -3257019 - L2 LINE L2 -337 2977 2695 3592 150 21 61 chr4 199071508 199072228 -3256119 + LTR8 LTR ERV1 1 691 0 1735 183 10 0 chr4 199072665 199072960 -3255387 + AluJb SINE Alu 1 298 -14 214 313 60 0 chr4 199075023 199075090 -3253257 - L2 LINE L2 -65 3207 3137 289 281 124 51 chr4 199075299 199075477 -3252870 + MIR3 SINE MIR 7 197 -11 2151 106 10 13 chr4 199077250 199077562 -3250785 - AluSq SINE Alu 0 313 3 374 307 52 39 chr4 199078211 199078411 -3249936 + MIR SINE MIR 3 203 -59 212 227 0 0 chr4 199079763 199079807 -3248540 + (CTG)n Simple_repeat Simple_repeat 2 45 0 237 341 90 18 chr4 199079900 199080067 -3248280 + MIR SINE MIR 84 262 0 2719 35 0 0 chr4 199080769 199081085 -3247262 - AluYb8 SINE Alu -2 316 1 180 370 90 0 chr4 199081401 199081501 -3246846 - MIR3 SINE MIR -17 191 83 555 288 37 84 chr4 199081889 199082295 -3246052 - MLT1J LTR MaLR -2 509 123 229 295 133 0 chr4 199085827 199085932 -3242415 + L2 LINE L2 3188 3306 -7 225 337 99 24 chr4 199086020 199086381 -3241966 + L2 LINE L2 2673 3072 -200 22 0 0 0 chr4 199088906 199088928 -3239419 + AT_rich Low_complexity Low_complexity 1 22 0 180 244 22 0 chr4 199089473 199089518 -3238829 - L2 LINE L2 -20 3293 3248 513 313 21 14 chr4 199089827 199089971 -3238376 + MER91A DNA MER1_type 8 152 -44 5489 90 37 3 chr4 199090317 199091071 -3237276 + LTR17 LTR ERV1 1 780 0 190 191 48 0 chr4 199091848 199091890 -3236457 - L2 LINE L2 -5 3267 3224 4390 188 7 11 chr4 199093782 199094623 -3233724 + L1MB7 LINE L1 1245 2082 -4483 2571 244 63 26 chr4 199094621 199095632 -3232715 + L1MB7 LINE L1 2306 3354 -4211 * 350 153 17 0 chr4 199095749 199095808 -3232539 + AluJ/FRAM SINE Alu 233 292 -10 2693 198 19 8 chr4 199095808 199096439 -3231908 + L1MB7 LINE L1 3664 4301 -3264 549 188 0 0 chr4 199096443 199096560 -3231787 + L1MA4 LINE L1 6180 6296 -4 1469 279 89 20 chr4 199097139 199097787 -3230560 - L1ME2 LINE L1 -14 6150 5458 21 0 0 0 chr4 199098235 199098256 -3230091 + AT_rich Low_complexity Low_complexity 1 21 0 1071 154 0 0 chr4 199100747 199100896 -3227451 - AluSq/x SINE Alu -163 149 1 252 333 0 11 chr4 199101140 199101233 -3227114 + MIR SINE MIR 161 252 -10 27 49 0 0 chr4 199101550 199101591 -3226756 + AT_rich Low_complexity Low_complexity 1 41 0 1704 109 4 0 chr4 199101960 199102190 -3226157 - AluSg/x SINE Alu -11 299 69 21 36 0 0 chr4 199104058 199104086 -3224261 + AT_rich Low_complexity Low_complexity 1 28 0 2374 100 0 0 chr4 199104092 199104401 -3223946 - AluY SINE Alu -2 309 1 4126 52 11 0 chr4 199105500 199106020 -3222327 + L1PA7 LINE L1 5616 6141 -13 2869 254 67 30 chr4 199106031 199107387 -3220960 + L1MB7 LINE L1 4504 5910 -1655 3707 134 6 55 chr4 199107405 199108127 -3220220 + L1PB3 LINE L1 5446 6131 -23 2532 217 103 53 chr4 199108123 199108624 -3219723 + L1MB7 LINE L1 5934 6409 -1194 * 857 136 0 0 chr4 199108624 199108749 -3219598 + FLAM_C SINE Alu 2 126 -7 2532 217 103 53 chr4 199108749 199109276 -3219071 + L1MB7 LINE L1 6409 6908 -695 2097 117 7 7 chr4 199109276 199109575 -3218772 + AluSx SINE Alu 1 299 -13 2532 217 103 53 chr4 199109575 199110111 -3218236 + L1MB7 LINE L1 6908 7575 -28 25 0 0 0 chr4 199110842 199110867 -3217480 + AT_rich Low_complexity Low_complexity 1 25 0 2525 114 14 0 chr4 199111016 199111375 -3216972 - THE1B LTR MaLR 0 364 1 343 316 53 42 chr4 199112237 199112500 -3215847 - L1MC/D LINE L1 -2274 5534 5269 2073 131 36 28 chr4 199112851 199113209 -3215138 - THE1B LTR MaLR 0 364 4 944 254 65 30 chr4 199113339 199113415 -3214932 + L1ME1 LINE L1 5784 5856 -310 2674 153 7 5 chr4 199113415 199113858 -3214489 + MER83 LTR ERV1 1 444 -4 944 254 65 30 chr4 199113858 199114151 -3214196 + L1ME1 LINE L1 5856 6166 0 779 239 118 23 chr4 199114201 199114507 -3213840 + MER90 LTR ERV1 1 335 -240 892 195 32 5 chr4 199114510 199114700 -3213647 + LTR1B LTR ERV1 632 826 0 335 248 28 48 chr4 199114914 199115085 -3213262 - MER34 LTR ERV1 -2 540 411 833 81 9 0 chr4 199115283 199115394 -3212953 + AluSc SINE Alu 174 285 -24 24 32 0 0 chr4 199115940 199115971 -3212376 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr4 199116528 199116558 -3211789 + AT_rich Low_complexity Low_complexity 1 30 0 1899 54 0 0 chr4 199117296 199117519 -3210828 + AluY SINE Alu 89 311 0 506 135 39 0 chr4 199117519 199117623 -3210724 + L1P LINE L1 5308 5415 -746 367 278 81 52 chr4 199117859 199118032 -3210315 - MIR SINE MIR -54 208 31 1570 157 71 25 chr4 199118952 199119418 -3208929 + MER51B LTR ERV1 1 377 0 2407 81 0 3 chr4 199119630 199119927 -3208420 + AluSc SINE Alu 1 296 -13 21 0 0 0 chr4 199120733 199120754 -3207593 + AT_rich Low_complexity Low_complexity 1 21 0 364 266 70 51 chr4 199121734 199121892 -3206455 + HAL1 LINE L1 998 1158 -1349 948 197 84 0 chr4 199321905 199322108 -3006239 - MLT2B1 LTR ERVL -300 220 1 5771 191 17 56 chr4 199322139 199324590 -3003757 + L1PB1 LINE L1 3811 6149 -2 2119 238 66 48 chr4 199324644 199324893 -3003454 - HERVL74 LTR ERVL -3898 1787 1544 1662 166 39 39 chr4 199324893 199325200 -3003147 + AluJo SINE Alu 1 307 -5 2119 238 66 48 chr4 199325200 199325660 -3002687 - HERVL74 LTR ERVL -4141 1544 1065 1061 127 4 9 chr4 199325688 199326040 -3002307 + (TTCC)n Simple_repeat Simple_repeat 1 530 0 595 209 108 6 chr4 199326062 199326220 -3002127 - HERVL74 LTR ERVL -2590 966 793 272 261 92 0 chr4 199326301 199326366 -3001981 + tRNA-Met-i tRNA tRNA 3 73 -2 1275 161 74 0 chr4 199326425 199326642 -3001705 + HUERS-P1 LTR ERV1 6348 6580 -957 1753 70 27 4 chr4 199326644 199326901 -3001446 + HUERS-P1 LTR ERV1 4560 4822 -1441 338 214 2 0 chr4 199326901 199326979 -3001368 + MSTB LTR MaLR 29 107 -319 276 197 49 0 chr4 199326980 199327041 -3001306 + MSTB LTR MaLR 46 109 -317 1227 185 130 4 chr4 199327043 199327319 -3001028 + MSTA LTR MaLR 47 357 -71 4812 94 13 13 chr4 199327343 199328035 -3000312 - L1PA10 LINE L1 -1 6167 5476 * 19350 42 4 3 chr4 199328030 199331230 -2997117 - L1PA4 LINE L1 -3 6152 2951 2052 133 0 0 chr4 199331231 199331524 -2996823 - AluSx SINE Alu -19 293 1 878 113 20 7 chr4 199333605 199333756 -2994591 + MER53 DNA DNA 36 188 -1 1107 180 66 80 chr4 199333851 199334140 -2994207 - AluJo SINE Alu -16 286 2 451 139 0 13 chr4 199334154 199334233 -2994114 - MADE1 DNA Mariner -2 78 1 703 190 0 0 chr4 199334235 199334356 -2993991 - FLAM_C SINE Alu -17 126 6 203 171 53 53 chr4 199334446 199334522 -2993825 + A-rich Low_complexity Low_complexity 5 80 0 606 230 116 55 chr4 199334528 199334889 -2993458 + L1ME LINE L1 606 988 -5082 445 324 47 7 chr4 199334955 199335103 -2993244 + L3 LINE CR1 377 530 -1047 419 302 39 34 chr4 199335469 199335648 -2992699 + MER5A DNA MER1_type 1 180 -9 234 217 188 0 chr4 199335767 199335836 -2992511 - MER20 DNA MER1_type -82 137 56 1991 127 0 0 chr4 199338344 199338619 -2989728 + AluSx SINE Alu 1 275 -37 1007 161 12 0 chr4 199338973 199339134 -2989213 - FRAM SINE Alu -18 158 1 22 80 0 0 chr4 199340370 199340420 -2987927 + AT_rich Low_complexity Low_complexity 1 50 0 277 191 0 0 chr4 199341656 199341703 -2986644 + tRNA-Arg-CGC tRNA tRNA 2 48 -28 24 0 0 0 chr4 199341748 199341772 -2986575 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 199341820 199341844 -2986503 + AT_rich Low_complexity Low_complexity 1 24 0 781 274 35 4 chr4 199341931 199342157 -2986190 + L1MC4a LINE L1 5597 5829 -1979 241 254 0 0 chr4 199344051 199344106 -2984241 - MER112 DNA MER1_type -25 235 181 550 219 58 13 chr4 199344155 199344310 -2984037 - MER112 DNA MER1_type -98 162 1 21 0 0 0 chr4 199344781 199344802 -2983545 + AT_rich Low_complexity Low_complexity 1 21 0 253 204 0 184 chr4 199345408 199345466 -2982881 - MER33 DNA MER1_type -2505 80 45 1657 186 7 14 chr4 199345466 199345757 -2982590 + AluJo SINE Alu 9 297 -15 253 204 0 184 chr4 199345757 199345796 -2982551 - MER33 DNA MER1_type -2540 45 1 24 0 0 0 chr4 199346736 199346760 -2981587 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr4 199346931 199346969 -2981378 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr4 199347968 199348004 -2980343 + AT_rich Low_complexity Low_complexity 1 36 0 800 236 149 0 chr4 199348056 199348264 -2980083 - L1MD2 LINE L1 -46 6313 6075 953 205 6 0 chr4 199348295 199348466 -2979881 + FRAM SINE Alu 1 171 -5 2147 110 7 10 chr4 199348614 199348915 -2979432 - AluSg SINE Alu -10 300 1 244 299 39 45 chr4 199349259 199349413 -2978934 + L1MC5 LINE L1 7733 7885 -76 1826 217 52 28 chr4 199349549 199350156 -2978191 + L1MB3 LINE L1 4945 5555 -747 331 181 0 24 chr4 199350156 199350239 -2978108 + L1MB3 LINE L1 6090 6170 -13 1826 217 52 28 chr4 199350239 199350300 -2978047 + L1MB3 LINE L1 5555 5613 -689 26 30 0 0 chr4 199350501 199350534 -2977813 + AT_rich Low_complexity Low_complexity 1 33 0 1627 176 7 10 chr4 199351137 199351432 -2976915 + AluJo SINE Alu 18 311 -1 334 324 105 40 chr4 199352034 199352358 -2975989 + L1ME LINE L1 36 380 -6016 3225 256 92 37 chr4 199352702 199352978 -2975369 + L1ME LINE L1 2435 2694 -3521 1978 126 3 23 chr4 199352978 199353288 -2975059 + AluSq SINE Alu 3 306 -7 3225 256 92 37 chr4 199353288 199353712 -2974635 + L1ME LINE L1 2694 3093 -3122 1293 128 90 0 chr4 199353712 199353923 -2974424 - MER30 DNA MER1_type 0 230 1 3225 256 92 37 chr4 199353923 199355178 -2973169 + L1ME LINE L1 3093 4543 -1672 253 255 43 21 chr4 199355185 199355279 -2973068 + L1ME LINE L1 4614 4709 -1506 1162 261 67 35 chr4 199355286 199355732 -2972615 + L1ME LINE L1 4768 5233 -982 1611 102 0 53 chr4 199355732 199355976 -2972371 + AluY SINE Alu 81 311 0 1162 261 67 35 chr4 199355976 199356039 -2972308 + L1ME LINE L1 5233 5293 -922 839 176 34 17 chr4 199356035 199356211 -2972136 + L1ME LINE L1 5546 5724 -509 * 197 139 23 0 chr4 199356923 199356966 -2971381 + CT-rich Low_complexity Low_complexity 2 45 0 537 282 47 7 chr4 199357161 199357310 -2971037 + MIR SINE MIR 17 171 -91 2891 165 77 19 chr4 199357311 199357946 -2970401 + L1MB7 LINE L1 5497 6168 -16 239 244 23 47 chr4 199357961 199358047 -2970300 + MIR SINE MIR 179 262 0 262 357 40 32 chr4 199358563 199358689 -2969658 - MIR SINE MIR -130 132 6 316 266 109 16 chr4 199360540 199360668 -2967679 + MIR SINE MIR 119 258 -4 314 315 34 20 chr4 199361493 199361639 -2966708 - MER5A DNA MER1_type -6 183 36 301 289 42 49 chr4 199361515 199361657 -2966690 + MER5A DNA MER1_type 43 183 -6 * 4070 204 9 51 chr4 199362405 199362833 -2965514 + L1PA16 LINE L1 5393 5838 -328 2017 180 62 10 chr4 199362833 199363238 -2965109 - MSTA LTR MaLR -2 426 1 4070 204 9 51 chr4 199363238 199363497 -2964850 + L1PA16 LINE L1 5838 6044 -122 1843 160 133 13 chr4 199363497 199363879 -2964468 - MSTA LTR MaLR 0 428 1 4070 204 9 51 chr4 199363879 199363989 -2964358 + L1PA16 LINE L1 6044 6157 -9 205 125 0 50 chr4 199363999 199364039 -2964308 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 180 0 0 0 chr4 199364696 199364716 -2963631 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 829 158 195 0 chr4 199365165 199365329 -2963018 + MER58A DNA MER1_type 16 211 -13 1732 119 0 4 chr4 199365616 199365890 -2962457 + AluY SINE Alu 39 311 0 424 322 9 9 chr4 199366418 199366533 -2961814 - MER5A DNA MER1_type -15 174 60 1208 185 54 47 chr4 199366537 199366943 -2961404 - LTR37A LTR ERV1 0 426 18 328 175 16 0 chr4 199367480 199367543 -2960804 - L1MA6 LINE L1 -14 7246 7183 1008 183 41 5 chr4 199367548 199367745 -2960602 - L1MA6 LINE L1 -293 6967 6764 774 195 81 26 chr4 199367752 199368042 -2960305 + MSTA LTR MaLR 1 428 0 12944 227 37 15 chr4 199368042 199370270 -2958077 - L1MA6 LINE L1 -510 6750 4572 1466 210 38 3 chr4 199370270 199370560 -2957787 - AluJo SINE Alu -5 307 8 12944 227 37 15 chr4 199370560 199374013 -2954334 - L1MA6 LINE L1 -2688 4572 926 416 248 0 19 chr4 199374051 199374156 -2954191 - L1MA6 LINE L1 -6921 109 7 289 262 75 28 chr4 199374302 199374409 -2953938 + MIR SINE MIR 80 191 -71 906 217 72 47 chr4 199374758 199375103 -2953244 - MER67C LTR ERV1 -3 511 173 303 259 18 62 chr4 199375104 199375216 -2953131 - MLT1I LTR MaLR -240 169 63 233 53 158 0 chr4 199375332 199375370 -2952977 - L1M2 LINE L1 -549 5751 5708 312 328 16 25 chr4 199375663 199375785 -2952562 + MIR SINE MIR 24 144 -118 180 314 108 0 chr4 199375954 199376056 -2952291 - MIR SINE MIR -70 192 80 638 221 8 0 chr4 199377396 199377523 -2950824 - FLAM_C SINE Alu -5 128 1 294 296 43 26 chr4 199377953 199378068 -2950279 + MIR SINE MIR 36 152 -56 234 324 67 0 chr4 199378302 199378407 -2949940 - MIR SINE MIR -71 191 80 210 116 47 0 chr4 199378894 199378937 -2949410 + (TA)n Simple_repeat Simple_repeat 2 46 0 1584 199 76 34 chr4 199379166 199379639 -2948708 - MLT1D LTR MaLR -3 502 10 978 211 50 107 chr4 199379971 199380354 -2947993 - MLT1A1 LTR MaLR -4 361 1 259 300 0 11 chr4 199380909 199380999 -2947348 + LTR67 LTR ERVL 434 522 -35 645 316 72 31 chr4 199381845 199382260 -2946087 - MLT1K LTR MaLR -10 578 147 625 275 63 26 chr4 199382262 199382451 -2945896 - MER91A DNA MER1_type 0 196 1 7045 239 85 31 chr4 199383040 199385381 -2942966 + L1MA9 LINE L1 2187 4400 -2148 323 188 16 0 chr4 199385381 199385445 -2942902 - MER2 DNA MER2_type 0 345 281 7045 239 85 31 chr4 199385445 199386480 -2941867 + L1MA9 LINE L1 4400 5377 -1171 1664 178 42 0 chr4 199386480 199386767 -2941580 + AluJo SINE Alu 1 299 -13 7045 239 85 31 chr4 199386767 199387447 -2940900 + L1MA9 LINE L1 5377 6548 0 1276 195 96 1 chr4 199387619 199388081 -2940266 - Charlie1b DNA MER1_type 0 523 22 936 200 40 77 chr4 199388490 199388790 -2939557 - AluJo SINE Alu -17 295 7 1694 176 7 3 chr4 199388858 199389147 -2939200 - AluJb SINE Alu -22 290 1 31 30 0 0 chr4 199389411 199389444 -2938903 + AT_rich Low_complexity Low_complexity 1 33 0 1040 229 106 37 chr4 199390555 199390905 -2937442 - MLT1A2 LTR MaLR 0 374 1 309 262 135 48 chr4 199391206 199391435 -2936912 - MIR SINE MIR -13 249 1 224 192 208 58 chr4 199392732 199392852 -2935495 - MIR SINE MIR -72 190 53 284 219 0 0 chr4 199394663 199394727 -2933620 + L1MB4 LINE L1 5637 5700 -480 367 235 0 0 chr4 199394747 199394828 -2933519 - 7SLRNA srpRNA srpRNA -10 310 230 1195 242 8 0 chr4 199395050 199395306 -2933041 - 7SLRNA srpRNA srpRNA -60 260 3 1854 181 34 10 chr4 199395333 199395742 -2932605 + L1MB4 LINE L1 5699 6117 -63 10449 168 20 15 chr4 199396645 199396827 -2931520 - Ricksha DNA DNA -15 3231 3052 2090 131 0 0 chr4 199396827 199397125 -2931222 + AluY SINE Alu 1 298 -13 10449 168 20 15 chr4 199397125 199399034 -2929313 - Ricksha DNA DNA -194 3052 1189 1563 163 3 0 chr4 199399036 199399318 -2929029 - Ricksha DNA DNA -2745 501 219 713 165 0 0 chr4 199399364 199399473 -2928874 + FLAM_C SINE Alu 3 111 -32 2535 102 21 19 chr4 199399474 199399848 -2928499 + THE1C LTR MaLR 1 375 0 8085 140 101 6 chr4 199399848 199401290 -2927057 + THE1C-int LTR MaLR 1 1580 0 1980 121 91 6 chr4 199401290 199401629 -2926718 + THE1C LTR MaLR 1 368 -7 511 167 0 0 chr4 199401657 199401747 -2926600 - Ricksha DNA DNA -1158 96 7 291 179 0 18 chr4 199402320 199402376 -2925971 - MER63 DNA MER1_type -330 730 676 348 295 72 61 chr4 199402478 199402729 -2925618 + L2 LINE L2 2764 3048 -265 263 246 0 0 chr4 199402732 199402797 -2925550 - MLT1E2 LTR MaLR 0 626 562 879 201 83 30 chr4 199402801 199403065 -2925282 - MLT1D LTR MaLR -158 347 70 551 300 22 50 chr4 199403104 199403381 -2924966 + L2 LINE L2 3045 3313 0 606 258 0 0 chr4 199403593 199403717 -2924630 - FLAM_C SINE Alu -19 124 1 2858 3 0 3 chr4 199404067 199404379 -2923968 + AluYa5 SINE Alu 1 311 0 1087 161 4 3 chr4 199404694 199411937 -2916410 - ALR/Alpha Satellite centromeric 0 9026 1403 3030 41 0 0 chr4 199411937 199412303 -2916044 + L1PA3 LINE L1 5785 6150 -5 1087 161 4 3 chr4 199412303 199413708 -2914639 - ALR/Alpha Satellite centromeric -7623 1403 1 2115 119 0 3 chr4 199413915 199414227 -2914120 + AluYa5 SINE Alu 1 311 0 198 71 0 0 chr4 199415607 199415635 -2912712 + (TC)n Simple_repeat Simple_repeat 1 28 0 192 40 0 0 chr4 199415635 199415660 -2912687 + (TG)n Simple_repeat Simple_repeat 2 26 0 268 299 103 17 chr4 199416981 199417098 -2911249 + MARNA DNA Mariner 94 220 -366 373 309 121 12 chr4 199417141 199417306 -2911041 + MIR SINE MIR 23 205 -57 205 196 0 22 chr4 199417982 199418028 -2910319 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 215 372 20 20 chr4 199419959 199420107 -2908240 + L2 LINE L2 2694 2841 -473 4786 32 0 0 chr4 199420583 199421178 -2907169 + L1P LINE L1 4437 5031 -1115 1555 275 143 41 chr4 199421415 199421948 -2906399 + L2 LINE L2 2141 2781 -532 1617 147 4 0 chr4 199421948 199422193 -2906154 - AluSx SINE Alu -9 303 58 1555 275 143 41 chr4 199422193 199422444 -2905903 + L2 LINE L2 2781 3005 -308 181 54 0 54 chr4 199422444 199422481 -2905866 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 16373 54 12 5 chr4 199422481 199425390 -2902957 - L1PA4 LINE L1 -24 6131 3199 14775 78 21 0 chr4 199425388 199427331 -2901016 - L1PA4 LINE L1 -4163 1983 1 * 369 271 14 14 chr4 199427340 199427480 -2900867 - L1M3 LINE L1 -364 5816 5677 1308 184 5 5 chr4 199427549 199427772 -2900575 + AluSx SINE Alu 3 225 -87 1192 206 56 137 chr4 199427777 199428516 -2899831 - L1M3 LINE L1 -508 5672 5016 * 7067 206 70 14 chr4 199428512 199429966 -2898381 - L1PA16 LINE L1 -6 6160 4532 1933 137 7 0 chr4 199429966 199430251 -2898096 - AluSc SINE Alu -22 287 1 7067 206 70 14 chr4 199430251 199431137 -2897210 - L1PA16 LINE L1 -1634 4532 3697 1242 131 0 0 chr4 199431138 199431329 -2897018 - AluY SINE Alu 0 311 121 1463 202 12 27 chr4 199431329 199431665 -2896682 - L1PA16 LINE L1 -2463 3683 3353 1308 277 40 29 chr4 199431719 199432419 -2895928 - L1M3 LINE L1 -1131 5015 4308 1339 152 5 0 chr4 199432638 199432842 -2895505 + AluSq SINE Alu 1 205 -108 1028 319 38 31 chr4 199433016 199433464 -2894883 + LTR40a LTR ERVL 65 515 -4 1169 161 5 1 chr4 199433772 199445983 -2882364 - ALR/Alpha Satellite centromeric -1 12259 1 1104 170 2 0 chr4 199445995 199452743 -2875604 - ALR/Alpha Satellite centromeric 0 6762 1 1110 164 16 0 chr4 199452854 199455517 -2872830 - ALR/Alpha Satellite centromeric 0 2705 1 858 0 10 0 chr4 199455517 199455616 -2872731 - L1PA2 LINE L1 -302 5853 5754 432 227 23 23 chr4 199455616 199455744 -2872603 + ALR/Alpha Satellite centromeric 45 172 0 * 1174 164 4 4 chr4 199455649 199458614 -2869733 + ALR/Alpha Satellite centromeric 1 2965 -3723 6916 53 0 0 chr4 199458614 199459474 -2868873 + L1PA3 LINE L1 5293 6152 -3 1174 164 4 4 chr4 199459474 199462279 -2866068 + ALR/Alpha Satellite centromeric 2965 6627 -61 794 175 7 0 chr4 199462295 199462496 -2865851 + ALR/Alpha Satellite centromeric 1 202 -10 1094 179 3 5 chr4 199462606 199463471 -2864876 + ALR/Alpha Satellite centromeric 1 866 -1422 2720 10 0 0 chr4 199463471 199463765 -2864582 - AluYa5 SINE Alu -8 303 10 1094 179 3 5 chr4 199463765 199464838 -2863509 + ALR/Alpha Satellite centromeric 866 2227 -61 1214 169 7 2 chr4 199464938 199475737 -2852610 + ALR/Alpha Satellite centromeric 1 10854 -39 1044 171 12 1 chr4 199475837 199477531 -2850816 - ALR/Alpha Satellite centromeric 0 1711 1 8219 51 1 0 chr4 199477531 199478584 -2849763 - L1P LINE L1 -2162 3984 2931 3792 58 8 0 chr4 199478584 199479064 -2849283 + L1PA3 LINE L1 5665 6151 -4 978 180 4 2 chr4 199479068 199481254 -2847093 - ALR/Alpha Satellite centromeric -1 2189 1 1094 171 5 2 chr4 199481359 199492293 -2836054 - ALR/Alpha Satellite centromeric 0 10962 1 5981 84 35 9 chr4 199492293 199493395 -2834952 + L1PA4 LINE L1 5028 6152 -3 1041 171 1 0 chr4 199493436 199494207 -2834140 - ALR/Alpha Satellite centromeric 0 772 1 1089 128 0 0 chr4 199494234 199494324 -2834023 + (GAGTG)n Simple_repeat Simple_repeat 1 270 0 1089 128 0 0 chr4 199494324 199494504 -2833843 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 942 144 0 0 chr4 199494569 199494749 -2833598 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 1155 102 0 0 chr4 199494844 199494929 -2833418 + (GAATG)n Satellite Satellite 1 262 0 1155 102 0 0 chr4 199494929 199495106 -2833241 + (GAATG)n Satellite Satellite 4 180 0 884 151 6 0 chr4 199495159 199495338 -2833009 + (GAATG)n Satellite Satellite 1 180 0 1083 98 0 0 chr4 199495381 199495544 -2832803 + (GAATG)n Satellite Satellite 5 167 0 400 172 16 0 chr4 199495555 199495619 -2832728 + AluS SINE Alu 225 289 -13 1017 138 0 0 chr4 199495620 199495917 -2832430 + (GAATG)n Satellite Satellite 1 297 0 326 241 24 0 chr4 199495917 199496007 -2832340 + AluJ/FRAM SINE Alu 225 279 -23 939 177 0 0 chr4 199496047 199496720 -2831627 + (GAATG)n Satellite Satellite 1 849 0 957 150 0 0 chr4 199496723 199496887 -2831460 + (GAATG)n Satellite Satellite 1 344 0 957 150 0 0 chr4 199496887 199497067 -2831280 + (GAATG)n Satellite Satellite 1 180 0 987 147 0 0 chr4 199497122 199497299 -2831048 + (GAATG)n Satellite Satellite 4 180 0 457 144 0 10 chr4 199497310 199497407 -2830940 + (GAATG)n Satellite Satellite 2 97 0 342 67 0 0 chr4 199497507 199497552 -2830795 + (GAATG)n Satellite Satellite 4 48 0 930 215 0 0 chr4 199497574 199497925 -2830422 + (GAATG)n Satellite Satellite 1 351 0 258 240 0 0 chr4 199497937 199497992 -2830355 + AluS SINE Alu 223 269 -31 1125 118 0 0 chr4 199498002 199498180 -2830167 + (GAATG)n Simple_repeat Simple_repeat 3 180 0 796 200 0 16 chr4 199498181 199498497 -2829850 + (GAGTG)n Simple_repeat Simple_repeat 1 311 0 906 157 0 0 chr4 199498522 199498700 -2829647 + (GAATG)n Simple_repeat Simple_repeat 3 180 0 528 197 0 0 chr4 199498691 199498902 -2829445 + (GAGTG)n Simple_repeat Simple_repeat 1 211 0 * 894 157 0 0 chr4 199498902 199499080 -2829267 + (GAATG)n Simple_repeat Simple_repeat 3 180 0 1073 132 4 0 chr4 199499082 199499320 -2829027 + (GAGTG)n Simple_repeat Simple_repeat 1 239 0 912 180 0 0 chr4 199499446 199499712 -2828635 + (GAATG)n Satellite Satellite 1 266 0 361 179 30 0 chr4 199499725 199499792 -2828555 + AluJ/FRAM SINE Alu 226 294 -8 1059 147 2 2 chr4 199499792 199500312 -2828035 + (GAATG)n Satellite Satellite 1 520 0 1019 123 6 0 chr4 199500323 199500494 -2827853 + (GAATG)n Satellite Satellite 5 176 0 328 185 31 0 chr4 199500504 199500569 -2827778 + AluS SINE Alu 223 289 -12 762 178 10 0 chr4 199500575 199500886 -2827461 + (GAATG)n Satellite Satellite 1 314 0 372 172 31 0 chr4 199500886 199500950 -2827397 + AluJ/FRAM SINE Alu 225 290 -12 516 158 0 0 chr4 199500951 199501046 -2827301 + (GAATG)n Simple_repeat Simple_repeat 1 95 0 1163 172 3 0 chr4 199501052 199511498 -2816849 + ALR/Alpha Satellite centromeric 1 10478 0 1643 179 3 0 chr4 199561504 199561795 -2766552 + AluSx SINE Alu 20 311 -1 314 214 24 0 chr4 199561808 199561892 -2766455 - L1M4 LINE L1 -411 5773 5688 1941 151 3 0 chr4 199562285 199562583 -2765764 - AluSq SINE Alu -11 302 4 363 170 330 0 chr4 199562970 199563070 -2765277 - MER20 DNA MER1_type -81 138 6 2036 134 0 0 chr4 199565619 199565917 -2762430 + AluSx SINE Alu 1 298 -14 1094 126 13 0 chr4 199566251 199566410 -2761937 - FRAM SINE Alu -18 158 1 22 80 0 0 chr4 199567648 199567698 -2760649 + AT_rich Low_complexity Low_complexity 1 50 0 279 191 0 0 chr4 199568637 199568684 -2759663 + tRNA-Arg-CGC tRNA tRNA 2 48 -28 24 0 0 0 chr4 199568802 199568826 -2759521 + AT_rich Low_complexity Low_complexity 1 24 0 854 248 58 78 chr4 199568913 199569308 -2759039 + L1MC4a LINE L1 5597 5983 -1825 227 262 9 47 chr4 199569997 199570104 -2758243 - L1ME4a LINE L1 -40 6081 5979 21 0 0 0 chr4 199570498 199570519 -2757828 + AT_rich Low_complexity Low_complexity 1 21 0 229 273 0 0 chr4 199570989 199571044 -2757303 - MER112 DNA MER1_type -25 235 181 635 200 58 13 chr4 199571093 199571248 -2757099 - MER112 DNA MER1_type -98 162 1 22 0 0 0 chr4 199571715 199571737 -2756610 + AT_rich Low_complexity Low_complexity 1 22 0 243 186 0 186 chr4 199572354 199572400 -2755947 - Charlie5 DNA MER1_type -254 70 46 1672 176 7 13 chr4 199572400 199572701 -2755646 + AluJo SINE Alu 9 307 -5 243 186 0 186 chr4 199572701 199572740 -2755607 - Charlie5 DNA MER1_type -278 46 1 24 53 0 0 chr4 199573985 199574023 -2754324 + AT_rich Low_complexity Low_complexity 1 38 0 955 189 238 0 chr4 199575093 199575320 -2753027 - L1MD2 LINE L1 -4 6355 6075 960 204 6 0 chr4 199575352 199575524 -2752823 + FRAM SINE Alu 1 172 -4 2199 107 3 26 chr4 199575673 199575981 -2752366 - AluSg SINE Alu -9 301 1 297 241 38 134 chr4 199576186 199576477 -2751870 + L1MC5 LINE L1 7620 7882 -79 1909 170 49 36 chr4 199576658 199577270 -2751077 + L1M3 LINE L1 4945 5556 -624 435 152 0 13 chr4 199577270 199577349 -2750998 + L1MB4 LINE L1 6092 6169 -11 21 71 0 0 chr4 199577540 199577582 -2750765 + AT_rich Low_complexity Low_complexity 1 42 0 33 0 0 0 chr4 199577613 199577646 -2750701 + AT_rich Low_complexity Low_complexity 1 33 0 565 256 6 6 chr4 199577828 199578000 -2750347 + L1M4 LINE L1 3574 3745 -2401 908 165 34 17 chr4 199578067 199578243 -2750104 + L1ME LINE L1 5477 5655 -509 240 157 39 0 chr4 199578954 199579005 -2749342 + CT-rich Low_complexity Low_complexity 2 54 0 477 254 18 9 chr4 199579200 199579314 -2749033 + MIR SINE MIR 17 131 -131 2868 175 74 27 chr4 199579316 199579980 -2748367 + L1MB7 LINE L1 5474 6168 -16 213 256 23 47 chr4 199579995 199580081 -2748266 + MIR SINE MIR 179 262 0 252 284 110 16 chr4 199582574 199582701 -2745646 + MIR SINE MIR 120 258 -4 329 331 30 36 chr4 199583526 199583692 -2744655 - MER5A DNA MER1_type -6 183 19 3620 137 8 20 chr4 199584440 199584843 -2743504 + L1PA16 LINE L1 5393 5788 -378 2283 168 62 12 chr4 199584843 199585249 -2743098 - MSTA LTR MaLR -2 426 1 3620 137 8 20 chr4 199585249 199585443 -2742904 + L1PA16 LINE L1 5788 5983 -183 34264 61 4 3 chr4 199585548 199589887 -2738460 - L1P LINE L1 -1798 4348 4 292 282 99 43 chr4 199590006 199590207 -2738140 - L1MEc LINE L1 -4921 1475 1248 186 43 0 0 chr4 199590207 199590230 -2738117 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 292 282 99 43 chr4 199590230 199590351 -2737996 - L1MEc LINE L1 -5148 1248 1135 22 0 0 0 chr4 199590410 199590432 -2737915 + AT_rich Low_complexity Low_complexity 1 22 0 2230 126 0 0 chr4 199591992 199592302 -2736045 - AluSx SINE Alu -2 310 1 192 276 37 134 chr4 199592674 199592808 -2735539 - L2 LINE L2 0 3272 3152 21 36 0 0 chr4 199593454 199593482 -2734865 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 199593534 199593557 -2734790 + AT_rich Low_complexity Low_complexity 1 23 0 901 130 19 7 chr4 199594380 199594534 -2733813 + MER53 DNA DNA 33 188 -1 1253 187 64 57 chr4 199594629 199594912 -2733435 - AluJo SINE Alu -16 286 2 568 101 0 13 chr4 199594924 199595003 -2733344 - MADE1 DNA Mariner -2 78 1 788 183 0 29 chr4 199595003 199595131 -2733216 - FLAM_C SINE Alu -186 126 1 625 225 82 56 chr4 199595297 199595654 -2732693 + L1ME LINE L1 622 988 -5082 463 309 40 7 chr4 199595720 199595869 -2732478 + L3 LINE CR1 377 530 -1047 226 234 21 0 chr4 199596267 199596314 -2732033 - MER5A DNA MER1_type -22 167 120 982 171 26 87 chr4 199596427 199596691 -2731656 - AluJo SINE Alu -58 254 7 1555 177 14 10 chr4 199596759 199597047 -2731300 - AluJb SINE Alu -23 289 1 33 0 0 0 chr4 199597317 199597350 -2730997 + AT_rich Low_complexity Low_complexity 1 33 0 1191 229 100 31 chr4 199598423 199598773 -2729574 - MLT1A2 LTR MaLR 0 374 1 260 286 87 29 chr4 199599074 199599302 -2729045 - MIR SINE MIR -13 249 1 2184 151 81 8 chr4 199600204 199600588 -2727759 - Tigger1 DNA MER2_type -941 1477 1066 1435 206 3 36 chr4 199600590 199600896 -2727451 - AluJb SINE Alu -16 296 1 881 173 0 0 chr4 199601355 199601488 -2726859 + FLAM_C SINE Alu 1 133 0 182 120 260 0 chr4 199601535 199601585 -2726762 - MIR3 SINE MIR -17 191 129 1846 154 3 3 chr4 199601706 199601992 -2726355 + AluSq SINE Alu 3 288 -25 2079 117 0 0 chr4 199602234 199602536 -2725811 + AluSq SINE Alu 1 302 0 21 36 0 0 chr4 199602713 199602741 -2725606 + AT_rich Low_complexity Low_complexity 1 28 0 1606 160 0 45 chr4 199603502 199603790 -2724557 + AluJo SINE Alu 1 275 -37 216 86 0 0 chr4 199603790 199603825 -2724522 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 * 617 73 37 0 chr4 199603824 199603933 -2724414 + (TA)n Simple_repeat Simple_repeat 1 113 0 802 264 114 45 chr4 199603933 199604412 -2723935 + L1M2 LINE L1 4655 5100 -1139 1612 140 105 14 chr4 199604412 199604697 -2723650 + AluSx SINE Alu 1 311 -1 802 264 114 45 chr4 199604697 199604983 -2723364 + L1M2 LINE L1 5100 5365 -874 2411 136 0 22 chr4 199604983 199605344 -2723003 - THE1A LTR MaLR -2 353 1 11780 117 3 1 chr4 199605344 199606921 -2721426 - THE1A-int LTR MaLR 0 1580 1 2592 105 3 43 chr4 199606921 199607291 -2721056 - THE1A LTR MaLR 0 355 1 802 264 114 45 chr4 199607291 199607645 -2720702 + L1M2 LINE L1 5364 5853 -386 1312 185 63 110 chr4 199607986 199608369 -2719978 + MLT1A1 LTR MaLR 1 365 0 253 222 16 0 chr4 199608585 199608648 -2719699 + CT-rich Low_complexity Low_complexity 1 64 0 216 163 0 0 chr4 199608652 199608695 -2719652 + (TG)n Simple_repeat Simple_repeat 2 44 0 2093 276 40 48 chr4 199609395 199610433 -2717914 + SST1 Satellite centromeric 1 1029 -534 758 222 34 26 chr4 199612977 199613196 -2715151 + MIR SINE MIR 37 259 -3 1088 227 36 8 chr4 199613198 199613449 -2714898 + MIR SINE MIR 5 262 0 270 323 12 1 chr4 199613877 199613970 -2714377 - MIR SINE MIR -76 132 40 406 218 186 26 chr4 199614301 199614457 -2713890 - MIR SINE MIR -12 250 70 3667 135 15 129 chr4 199615091 199615576 -2712771 - Tigger1 DNA MER2_type -697 1721 1363 2066 126 19 7 chr4 199615576 199615885 -2712462 - AluSq SINE Alu 0 313 1 3667 135 15 129 chr4 199615885 199616207 -2712140 - Tigger1 DNA MER2_type -1055 1363 1006 576 175 19 0 chr4 199616202 199616305 -2712042 - Tigger1 DNA MER2_type -1908 510 406 * 226 261 0 14 chr4 199616441 199616510 -2711837 + (CCCGG)n Simple_repeat Simple_repeat 5 72 0 325 278 45 7 chr4 199617262 199617543 -2710804 - LSAU Satellite Satellite -139 291 1 647 177 0 23 chr4 199617604 199617779 -2710568 + GA-rich Low_complexity Low_complexity 2 172 0 237 195 0 0 chr4 199618199 199618240 -2710107 - MLT1D LTR MaLR -106 399 359 3489 219 34 33 chr4 199618321 199619483 -2708864 + L1MB3 LINE L1 4910 6183 0 355 328 0 0 chr4 199619493 199619615 -2708732 + L1ME3A LINE L1 5817 5938 -232 2744 157 52 0 chr4 199621400 199621858 -2706489 + LTR43 LTR ERV1 121 602 0 2251 262 79 64 chr4 199621858 199623024 -2705323 + LTR43-int LTR ERV1 1 1662 -3842 290 216 0 0 chr4 199623576 199623627 -2704720 + LTR43-int LTR ERV1 3842 3892 -906 2875 209 53 29 chr4 199623633 199624280 -2704067 + LTR43-int LTR ERV1 4136 4797 -1 3509 143 18 36 chr4 199624296 199624342 -2704005 + LTR43 LTR ERV1 6 51 -551 5700 136 37 21 chr4 199624342 199625296 -2703051 + LTR5 LTR ERVK 1 969 0 3509 143 18 36 chr4 199625296 199625481 -2702866 + LTR43 LTR ERV1 51 238 -364 1927 163 0 0 chr4 199625481 199625776 -2702571 + AluSx SINE Alu 5 299 -13 3509 143 18 36 chr4 199625776 199626151 -2702196 + LTR43 LTR ERV1 238 602 0 705 266 32 36 chr4 199626151 199626807 -2701540 + BSR/Beta Satellite Satellite 1 653 -62 1341 288 26 11 chr4 199626829 199627269 -2701078 - BSR/Beta Satellite Satellite -74 446 1 737 266 23 24 chr4 199627375 199629186 -2699161 - BSR/Beta Satellite Satellite -15 1808 1 632 65 22 0 chr4 199629224 199629316 -2699031 + AluSg/x SINE Alu 216 309 0 257 148 0 37 chr4 199629526 199629580 -2698767 - L1MA6 LINE L1 -32 6268 6217 * 307 209 0 2 chr4 199629573 199629640 -2698707 + L1MA6 LINE L1 6223 6291 -9 243 200 0 0 chr4 199629685 199629735 -2698612 + L1MA7 LINE L1 6233 6282 -9 2309 182 53 2 chr4 199629850 199630278 -2698069 - L1MA6 LINE L1 -68 6232 5777 309 51 0 0 chr4 199630278 199630317 -2698030 + (TG)n Simple_repeat Simple_repeat 2 40 0 2309 182 53 2 chr4 199630317 199630355 -2697992 - L1MA6 LINE L1 -523 5777 5742 1138 129 5 57 chr4 199630351 199630560 -2697787 + L1MA6 LINE L1 5527 5724 -576 * 246 67 0 0 chr4 199631465 199631495 -2696852 - Alu SINE Alu -186 113 84 941 191 27 49 chr4 199631495 199631720 -2696627 - AluJo SINE Alu -92 220 1 2057 84 18 0 chr4 199631745 199632030 -2696317 + AluSg SINE Alu 1 290 -20 1495 199 30 7 chr4 199632051 199632352 -2695995 - L1MC1 LINE L1 -233 6100 5793 793 240 58 0 chr4 199632354 199632596 -2695751 + L1MC1 LINE L1 6077 6332 -1 25 65 0 0 chr4 199632757 199632803 -2695544 + AT_rich Low_complexity Low_complexity 1 46 0 27 29 0 0 chr4 199633018 199633052 -2695295 + AT_rich Low_complexity Low_complexity 1 34 0 272 154 52 22 chr4 199633881 199634017 -2694330 + (CA)n Simple_repeat Simple_repeat 2 141 0 269 122 55 61 chr4 199634052 199634233 -2694114 + (CA)n Simple_repeat Simple_repeat 1 180 0 352 136 54 37 chr4 199634286 199634589 -2693758 + (CA)n Simple_repeat Simple_repeat 1 308 0 359 96 27 62 chr4 199634603 199634749 -2693598 + (CA)n Simple_repeat Simple_repeat 1 141 0 305 148 49 31 chr4 199634776 199634938 -2693409 + (CA)n Simple_repeat Simple_repeat 1 165 0 236 100 25 0 chr4 199636079 199636119 -2692228 + (CA)n Simple_repeat Simple_repeat 2 42 0 206 299 35 23 chr4 199636555 199636642 -2691705 + MER5B DNA MER1_type 1 88 -90 1334 194 20 32 chr4 199637127 199637409 -2690938 - AluJb SINE Alu 0 313 35 196 375 0 0 chr4 199638169 199638217 -2690130 + L2 LINE L2 3203 3250 -22 191 308 55 22 chr4 199638353 199638444 -2689903 - MER5B DNA MER1_type -84 94 1 237 358 100 39 chr4 199638658 199638887 -2689460 + MIR SINE MIR 18 260 -2 935 276 73 0 chr4 199639513 199639814 -2688533 - LTR53 LTR ERVL -8 511 189 4208 254 37 31 chr4 199640310 199641555 -2686792 - HERVL74 LTR ERVL -2314 3371 2117 1802 166 0 7 chr4 199641555 199641851 -2686496 + AluJo SINE Alu 1 294 -18 4208 254 37 31 chr4 199641851 199641879 -2686468 - HERVL74 LTR ERVL -3568 2117 2091 1223 219 81 0 chr4 199642045 199642305 -2686042 - HERVL74 LTR ERVL -3590 2095 1815 1880 207 106 14 chr4 199642305 199642739 -2685608 - MLT2B1 LTR ERVL -46 474 1 247 105 0 0 chr4 199642739 199642776 -2685571 - U5 snRNA snRNA -76 40 4 5985 174 17 46 chr4 199642776 199645309 -2683038 + L1PB1 LINE L1 3817 6151 0 2352 208 54 59 chr4 199645359 199645612 -2682735 - HERVL74 LTR ERVL -3894 1791 1538 1563 209 16 19 chr4 199645612 199645919 -2682428 + AluJo SINE Alu 1 306 -6 2352 208 54 59 chr4 199645919 199646329 -2682018 - HERVL74 LTR ERVL -4147 1538 1131 961 126 6 6 chr4 199646409 199646576 -2681771 + (TTCC)n Simple_repeat Simple_repeat 2 168 0 729 150 0 0 chr4 199646587 199646720 -2681627 + CT-rich Low_complexity Low_complexity 2 134 0 501 210 140 13 chr4 199646734 199646891 -2681456 - HERVL74 LTR ERVL -2587 969 793 272 261 92 0 chr4 199646964 199647029 -2681318 + tRNA-Met-i tRNA tRNA 3 73 -2 1358 143 74 0 chr4 199647087 199647304 -2681043 + HUERS-P1 LTR ERV1 6348 6580 -957 * 1797 97 8 4 chr4 199647303 199647571 -2680776 + HUERS-P1 LTR ERV1 4557 4825 -1438 417 200 0 0 chr4 199647571 199647646 -2680701 + MSTB LTR MaLR 33 107 -319 1405 146 134 4 chr4 199647647 199647922 -2680425 + MSTA LTR MaLR 47 357 -71 4782 107 12 0 chr4 199647953 199648637 -2679710 - L1PA10 LINE L1 -1 6167 5476 * 8038 42 9 0 chr4 199648632 199650411 -2677936 - L1PA4 LINE L1 -3 6152 4362 1426 125 5 0 chr4 199650511 199650711 -2677636 - AluSp SINE Alu -109 204 4 2038 147 0 0 chr4 199650727 199651027 -2677320 - AluSq SINE Alu -13 300 1 2065 123 0 0 chr4 199651590 199651875 -2676472 + AluY SINE Alu 1 285 -26 29 47 0 0 chr4 199651875 199651918 -2676429 + AT_rich Low_complexity Low_complexity 1 43 0 2838 174 12 58 chr4 199651918 199652175 -2676172 - MER57B-int LTR ERV1 -6998 539 272 2084 138 0 0 chr4 199652175 199652473 -2675874 + AluSx SINE Alu 4 301 -11 2838 174 12 58 chr4 199652473 199652780 -2675567 - MER57B-int LTR ERV1 -7265 272 1 2659 137 16 7 chr4 199652780 199653210 -2675137 - MER57B LTR ERV1 0 434 1 1076 96 0 19 chr4 199653210 199653367 -2674980 + MER4E LTR ERV1 613 766 0 1154 240 14 11 chr4 199653367 199653654 -2674693 + L1ME2 LINE L1 5802 6089 -75 234 0 0 0 chr4 199653691 199653717 -2674630 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 379 291 122 25 chr4 199654092 199654288 -2674059 - LTR33 LTR ERVL 0 521 307 386 286 79 14 chr4 199654534 199654674 -2673673 - LTR16C LTR ERVL -109 382 234 671 327 114 40 chr4 199655073 199655581 -2672766 - L2 LINE L2 -206 3107 2544 32 0 0 0 chr4 199657174 199657206 -2671141 + AT_rich Low_complexity Low_complexity 1 32 0 2524 244 75 18 chr4 199657206 199658005 -2670342 + L1ME1 LINE L1 5316 6160 -6 231 254 0 0 chr4 199658005 199658064 -2670283 + L1ME1 LINE L1 6101 6159 -7 413 279 64 54 chr4 199658089 199658587 -2669760 + L1ME3A LINE L1 3345 3847 -2299 399 193 80 106 chr4 199658582 199658676 -2669671 + L1MC4 LINE L1 7759 7854 -188 * 1939 149 79 18 chr4 199658676 199659019 -2669328 - THE1B LTR MaLR 0 364 1 399 193 80 106 chr4 199659019 199659188 -2669159 + L1MC4 LINE L1 7854 8015 -27 893 291 97 24 chr4 199659346 199660113 -2668234 + L1ME3A LINE L1 3992 4814 -1332 1470 297 90 18 chr4 199660371 199661252 -2667095 + L1ME3A LINE L1 5225 6166 -4 22 0 0 0 chr4 199662220 199662242 -2666105 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr4 199662307 199662336 -2666011 + AT_rich Low_complexity Low_complexity 1 29 0 319 374 0 0 chr4 199662376 199662507 -2665840 - L1M4 LINE L1 -3325 2821 2691 326 268 81 60 chr4 199662671 199662906 -2665441 - L1M4 LINE L1 -3692 2454 2215 406 327 101 35 chr4 199662972 199663370 -2664977 - LTR33 LTR ERVL -67 454 31 1881 320 19 10 chr4 199664244 199664872 -2663475 - ERVL LTR ERVL -1075 4689 4056 484 328 162 20 chr4 199664927 199665335 -2663012 - ERVL LTR ERVL -2101 3553 3088 286 350 17 8 chr4 199665405 199665522 -2662825 - ERVL LTR ERVL -2726 3038 2921 730 154 7 37 chr4 199665579 199665715 -2662632 + FLAM_C SINE Alu 1 132 -1 633 301 39 27 chr4 199665752 199666180 -2662167 - LTR33 LTR ERVL -57 464 1 22 35 0 0 chr4 199666767 199666796 -2661551 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 199668343 199668364 -2659983 + AT_rich Low_complexity Low_complexity 1 21 0 309 284 43 17 chr4 199668661 199668777 -2659570 + L3 LINE CR1 1152 1270 -307 254 317 0 50 chr4 199668895 199668996 -2659351 + L3 LINE CR1 1481 1576 -1 237 337 83 36 chr4 199669085 199669278 -2659069 + MIR SINE MIR 3 204 -58 23 0 0 0 chr4 199669637 199669660 -2658687 + AT_rich Low_complexity Low_complexity 1 23 0 447 332 85 50 chr4 199669781 199670727 -2657620 + L1MEc LINE L1 36 1014 -5382 417 315 31 17 chr4 199670791 199671083 -2657264 + L1MEc LINE L1 1489 1784 -4612 11439 53 3 4 chr4 199671814 199674022 -2654325 + L1PA5 LINE L1 3928 6134 -20 254 228 30 50 chr4 199674143 199674244 -2654103 + L1ME2 LINE L1 5710 5808 -356 707 236 100 35 chr4 199674260 199674519 -2653828 + L1ME2 LINE L1 5888 6163 -1 1706 244 82 51 chr4 199674761 199675367 -2652980 + MLT1E2 LTR MaLR 1 625 -1 1371 164 82 43 chr4 199675498 199675839 -2652508 - THE1C LTR MaLR 0 375 1 238 370 170 0 chr4 199677256 199677456 -2650891 - MIR SINE MIR -4 258 25 974 203 19 47 chr4 199677701 199677957 -2650390 + MER96B DNA MER1_type? 1 249 -168 22 35 0 0 chr4 199678216 199678245 -2650102 + AT_rich Low_complexity Low_complexity 1 29 0 392 352 84 28 chr4 199678822 199679109 -2649238 + HAL1b LINE L1 631 933 -415 1711 141 53 53 chr4 199679692 199679872 -2648475 + THE1C LTR MaLR 1 180 -195 1935 144 7 7 chr4 199679872 199680163 -2648184 + AluSx SINE Alu 7 297 -15 1711 141 53 53 chr4 199680163 199680357 -2647990 + THE1C LTR MaLR 179 375 0 1353 160 4 0 chr4 199680443 199680681 -2647666 - Tigger5 DNA MER2_type 0 2323 2085 317 206 0 16 chr4 199680702 199680765 -2647582 - Tigger5 DNA MER2_type -2261 62 1 285 75 0 0 chr4 199680784 199680824 -2647523 + (CA)n Simple_repeat Simple_repeat 2 41 0 220 259 0 0 chr4 199680825 199680879 -2647468 + GA-rich Low_complexity Low_complexity 1 54 0 274 248 81 45 chr4 199680972 199681170 -2647177 + L1ME3A LINE L1 4132 4336 -1810 326 250 0 0 chr4 199681227 199681295 -2647052 - MER96B DNA MER1_type? -107 68 1 499 297 6 0 chr4 199681306 199681471 -2646876 + L1ME3A LINE L1 5401 5566 -604 372 200 0 12 chr4 199681560 199681645 -2646702 + L1ME3A LINE L1 5794 5877 -293 1333 230 117 20 chr4 199681667 199682022 -2646325 - MLT1D LTR MaLR 0 505 93 2061 130 3 16 chr4 199682022 199682337 -2646010 - AluSx SINE Alu -1 311 1 1333 230 117 20 chr4 199682337 199682441 -2645906 - MLT1D LTR MaLR -412 93 1 22 35 0 0 chr4 199682667 199682696 -2645651 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr4 199682713 199682737 -2645610 + AT_rich Low_complexity Low_complexity 1 24 0 325 227 50 34 chr4 199682761 199682880 -2645467 + HAL1b LINE L1 1083 1203 -145 230 193 105 53 chr4 199683040 199683154 -2645193 + HAL1b LINE L1 1227 1346 -2 233 299 95 95 chr4 199683226 199683447 -2644900 - MIR SINE MIR -12 250 30 1361 152 19 23 chr4 199684413 199684559 -2643788 + L1PA16 LINE L1 5902 6048 -118 1825 160 137 13 chr4 199684559 199684940 -2643407 - MSTA LTR MaLR 0 428 1 1361 152 19 23 chr4 199684940 199685050 -2643297 + L1PA16 LINE L1 6048 6157 -9 201 146 49 0 chr4 199685059 199685100 -2643247 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 180 0 0 0 chr4 199685759 199685779 -2642568 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 785 160 141 0 chr4 199686240 199686396 -2641951 + MER58A DNA MER1_type 34 211 -13 1684 123 0 4 chr4 199686683 199686949 -2641398 + AluY SINE Alu 39 303 0 380 325 18 9 chr4 199687485 199687599 -2640748 - MER5A DNA MER1_type -15 174 60 1056 190 54 47 chr4 199687603 199688009 -2640338 - LTR37A LTR ERV1 0 426 18 282 206 16 0 chr4 199688547 199688610 -2639737 - L1MA6 LINE L1 -14 7246 7183 963 178 41 5 chr4 199688615 199688812 -2639535 - L1MA6 LINE L1 -293 6967 6764 736 168 121 0 chr4 199688819 199688968 -2639379 + MSTA LTR MaLR 1 167 -261 607 229 49 0 chr4 199688961 199689105 -2639242 + MSTA LTR MaLR 278 428 0 * 7951 181 25 7 chr4 199689105 199691334 -2637013 - L1MA6 LINE L1 -510 6750 4478 1432 224 38 3 chr4 199691334 199691624 -2636723 - AluJo SINE Alu -5 307 8 4355 260 44 17 chr4 199691635 199695081 -2633266 - L1MA6 LINE L1 -2626 4480 929 341 250 10 19 chr4 199695122 199695226 -2633121 - L1MA6 LINE L1 -6921 109 7 292 308 56 9 chr4 199695372 199695479 -2632868 + MIR SINE MIR 80 191 -71 908 214 75 46 chr4 199695828 199696172 -2632175 - MER67C LTR ERV1 -3 511 173 346 232 18 62 chr4 199696173 199696285 -2632062 - MLT1I LTR MaLR -240 169 63 233 53 158 0 chr4 199696401 199696439 -2631908 - L1M2 LINE L1 -540 5751 5708 340 303 157 22 chr4 199696751 199696929 -2631418 + MIR SINE MIR 24 225 -37 180 314 108 0 chr4 199697045 199697147 -2631200 - MIR SINE MIR -70 192 80 678 192 0 8 chr4 199698752 199698877 -2629470 - FLAM_C SINE Alu -17 126 3 244 353 26 17 chr4 199699296 199699412 -2628935 + MIR SINE MIR 24 140 -122 193 349 64 0 chr4 199699584 199699693 -2628654 - MIR SINE MIR -66 196 81 213 120 40 20 chr4 199700181 199700231 -2628116 + (TA)n Simple_repeat Simple_repeat 1 51 0 1640 192 85 40 chr4 199700460 199700940 -2627407 - MLT1D LTR MaLR -3 502 1 766 203 13 110 chr4 199701261 199701488 -2626859 - MLT1A1 LTR MaLR 0 365 161 265 254 140 18 chr4 199701534 199701648 -2626699 - MLT1A1 LTR MaLR -268 128 1 277 289 0 11 chr4 199702180 199702270 -2626077 + LTR67 LTR ERVL 434 522 -35 721 316 70 34 chr4 199703114 199703531 -2624816 - MLT1K LTR MaLR -10 578 147 655 326 12 0 chr4 199703533 199703705 -2624642 - MER91A DNA MER1_type 0 196 23 7268 227 35 7 chr4 199704309 199706568 -2621779 + L1M4c LINE L1 2187 4510 -1872 356 215 32 11 chr4 199706569 199706662 -2621685 + MER2 DNA MER2_type 1 95 -250 382 156 16 0 chr4 199706662 199706726 -2621621 - MER2 DNA MER2_type 0 345 281 3942 207 46 18 chr4 199706796 199708086 -2620261 + L1MA9 LINE L1 4512 5879 -669 1756 167 42 0 chr4 199708086 199708373 -2619974 + AluJo SINE Alu 1 299 -13 3942 207 46 18 chr4 199708373 199708979 -2619368 + L1MA9 LINE L1 5879 6467 -81 39385 45 24 3 chr4 199708984 199715005 -2613342 + L1PA2 LINE L1 1 6155 0 1193 209 91 1 chr4 199715280 199715746 -2612601 - Charlie1b DNA MER1_type 0 523 22 304 313 66 30 chr4 199716115 199716281 -2612066 + MLT1J2 LTR MaLR 258 429 -21 1985 160 0 3 chr4 199716345 199716639 -2611708 + AluSx SINE Alu 1 293 -19 431 343 46 6 chr4 199716680 199716855 -2611492 - MIR SINE MIR -32 230 49 320 213 133 0 chr4 199717102 199717177 -2611170 - MIR3 SINE MIR -48 160 76 2277 159 21 17 chr4 199717877 199718343 -2610004 - L1MB7 LINE L1 0 6184 5717 250 219 0 68 chr4 199718880 199718953 -2609394 - L2 LINE L2 -83 3230 3163 305 263 193 29 chr4 199719169 199719340 -2609007 - MIR SINE MIR 0 262 64 2148 120 7 0 chr4 199719378 199719729 -2608618 - AluSq SINE Alu 0 313 1 1972 120 34 24 chr4 199720375 199720666 -2607681 + AluSq SINE Alu 1 294 -19 694 176 0 0 chr4 199720675 199720783 -2607564 - FLAM_A SINE Alu -34 108 1 630 246 84 11 chr4 199720796 199720975 -2607372 - MIR SINE MIR -64 198 7 313 232 179 18 chr4 199721546 199721658 -2606689 - L2 LINE L2 -2 3270 3141 268 253 154 68 chr4 199722029 199722250 -2606097 + LTR33 LTR ERVL 47 286 -235 292 304 32 16 chr4 199722302 199722427 -2605920 + LTR33 LTR ERVL 390 516 -5 285 139 0 0 chr4 199722766 199722809 -2605538 - MIR SINE MIR -62 146 104 644 198 124 45 chr4 199722927 199723129 -2605218 + MIR SINE MIR 23 240 -22 276 275 25 0 chr4 199724031 199724111 -2604236 + MIR3 SINE MIR 112 193 -15 456 329 21 7 chr4 199725305 199725448 -2602899 + L2 LINE L2 3127 3271 -1 2172 130 7 0 chr4 199725786 199726093 -2602254 - AluSx SINE Alu -3 309 1 658 339 63 21 chr4 199726094 199726326 -2602021 - L2 LINE L2 -8 3305 3052 2318 88 0 0 chr4 199726326 199726677 -2601670 + AluSp SINE Alu 1 351 0 658 339 63 21 chr4 199726677 199726776 -2601571 - L2 LINE L2 -261 3052 2959 414 266 182 0 chr4 199726917 199727060 -2601287 + MER5A DNA MER1_type 21 189 0 473 207 95 35 chr4 199727797 199727966 -2600381 + MIR SINE MIR 13 191 -71 1728 146 73 0 chr4 199727966 199728227 -2600120 + AluJb SINE Alu 1 280 -32 266 229 0 0 chr4 199728297 199728345 -2600002 + MIR SINE MIR 37 84 -124 1949 137 10 3 chr4 199728382 199728675 -2599672 - AluSx SINE Alu -13 299 5 313 302 56 0 chr4 199728680 199728806 -2599541 + MIR3 SINE MIR 70 202 -6 270 0 0 0 chr4 199729171 199729201 -2599146 + (TG)n Simple_repeat Simple_repeat 2 31 0 332 324 48 0 chr4 199729496 199729641 -2598706 - L2 LINE L2 -20 3252 3101 1801 168 3 19 chr4 199732022 199732331 -2596016 - AluJb SINE Alu -8 304 1 460 246 45 37 chr4 199732743 199732877 -2595470 - L2 LINE L2 -1 3271 3137 507 221 83 33 chr4 199732894 199733075 -2595272 - L2 LINE L2 -2 3311 3122 2019 125 0 4 chr4 199733994 199734275 -2594072 - AluSx SINE Alu -11 301 22 1348 135 98 105 chr4 199734281 199734577 -2593770 - AluJo SINE Alu -10 302 9 321 228 109 0 chr4 199735068 199735160 -2593187 + L2 LINE L2 3202 3303 -10 23 86 0 0 chr4 199736850 199736908 -2591439 + AT_rich Low_complexity Low_complexity 1 58 0 261 236 19 29 chr4 199737966 199738127 -2590220 - MIR SINE MIR -2 260 29 799 81 9 0 chr4 199738236 199738347 -2590000 + HY1 scRNA scRNA 1 112 0 183 321 18 0 chr4 199738384 199738440 -2589907 + MIR SINE MIR 37 93 -115 552 286 62 0 chr4 199738542 199738720 -2589627 + MIR SINE MIR 64 252 -10 2208 115 0 3 chr4 199738902 199739207 -2589140 + AluSx SINE Alu 1 304 -8 1189 254 113 26 chr4 199741799 199741977 -2586370 + L2 LINE L2 2537 2698 -615 2011 145 0 0 chr4 199741977 199742266 -2586081 + AluSg SINE Alu 1 289 -21 1189 254 113 26 chr4 199742266 199742807 -2585540 + L2 LINE L2 2698 3290 -23 229 224 56 47 chr4 199743884 199743991 -2584356 + L1MC4a LINE L1 6088 6195 -1613 201 211 96 67 chr4 199744126 199744230 -2584117 - MIR SINE MIR -86 122 16 395 242 11 0 chr4 199744490 199744581 -2583766 + MIR SINE MIR 56 147 -115 240 59 0 0 chr4 199747113 199747147 -2581200 + (CA)n Simple_repeat Simple_repeat 1 34 0 236 268 96 51 chr4 199747191 199747348 -2580999 - SST1 Satellite centromeric -11 1552 1389 522 281 127 51 chr4 199747535 199748119 -2580228 - SST1 Satellite centromeric -804 759 132 974 188 11 5 chr4 199748228 199749390 -2578957 + ALR/Alpha Satellite centromeric 1 1213 -957 185 62 0 31 chr4 199749390 199749422 -2578925 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 974 188 11 5 chr4 199749422 199750382 -2577965 + ALR/Alpha Satellite centromeric 1213 2166 -4 871 194 0 0 chr4 199750410 199750648 -2577699 + ALR/Alpha Satellite centromeric 1 238 -20 234 0 0 0 chr4 199750656 199750682 -2577665 + (A)n Simple_repeat Simple_repeat 1 26 0 944 193 6 8 chr4 199750682 199754230 -2574117 + ALR/Alpha Satellite centromeric 1 3541 -7 901 204 13 9 chr4 199754241 199754635 -2573712 + ALR/Alpha Satellite centromeric 1 392 -1239 2272 81 54 0 chr4 199754635 199754930 -2573417 + AluY SINE Alu 1 311 0 901 204 13 9 chr4 199754930 199755862 -2572485 + ALR/Alpha Satellite centromeric 392 1627 -4 2854 27 0 0 chr4 199755864 199756194 -2572153 - L1PA3 LINE L1 -1 6154 5825 1470 40 0 0 chr4 199756194 199756369 -2571978 + L1PA3 LINE L1 5640 5814 -341 999 211 10 2 chr4 199756369 199758148 -2570199 + ALR/Alpha Satellite centromeric 1 1792 -18 226 37 0 0 chr4 199758148 199758175 -2570172 - L1M LINE L1 -2585 5410 5384 942 199 0 0 chr4 199758191 199758347 -2570000 + AluJb SINE Alu 137 292 -20 1966 154 0 7 chr4 199758350 199758649 -2569698 + AluY SINE Alu 1 297 -14 4964 171 29 12 chr4 199758655 199759620 -2568727 - L1MC2 LINE L1 -3 6341 5361 216 350 71 14 chr4 199760144 199760284 -2568063 - MIR SINE MIR -97 165 18 528 65 0 0 chr4 199760929 199761006 -2567341 + (TC)n Simple_repeat Simple_repeat 2 78 0 396 0 0 0 chr4 199761005 199761049 -2567298 + (TA)n Simple_repeat Simple_repeat 1 44 0 * 1467 162 77 18 chr4 199761055 199761327 -2567020 - AluSg SINE Alu -20 290 3 768 252 78 30 chr4 199761344 199761677 -2566670 - L1MA9 LINE L1 -30 6282 5934 312 111 0 22 chr4 199761696 199761741 -2566606 - Alu SINE Alu -262 46 3 21 0 0 0 chr4 199762072 199762093 -2566254 + AT_rich Low_complexity Low_complexity 1 21 0 1686 111 4 29 chr4 199762093 199762362 -2565985 - AluSg/x SINE Alu 0 335 73 282 143 0 0 chr4 199812394 199812443 -2515904 + (TTG)n Simple_repeat Simple_repeat 2 50 0 679 231 122 53 chr4 199812447 199812767 -2515580 - L1PA16 LINE L1 -19 6147 5806 213 39 0 0 chr4 199812801 199812827 -2515520 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 285 29 0 0 chr4 199813888 199813922 -2514425 + (TC)n Simple_repeat Simple_repeat 1 34 0 1563 176 18 0 chr4 199814068 199814347 -2514000 + AluSx SINE Alu 1 284 -28 435 121 0 48 chr4 199814393 199814476 -2513871 + AluJb SINE Alu 155 233 -79 612 22 22 22 chr4 199814517 199814608 -2513739 + (TTTTC)n Simple_repeat Simple_repeat 5 95 0 738 171 0 0 chr4 199814762 199814983 -2513364 + GA-rich Low_complexity Low_complexity 1 221 0 590 193 6 0 chr4 199815039 199815210 -2513137 + GA-rich Low_complexity Low_complexity 2 173 0 487 204 0 12 chr4 199815229 199815264 -2513083 + GA-rich Low_complexity Low_complexity 2 36 -130 2209 87 0 0 chr4 199815264 199815562 -2512785 + AluY SINE Alu 3 300 -11 487 204 0 12 chr4 199815562 199815693 -2512654 + GA-rich Low_complexity Low_complexity 36 166 0 741 172 3 0 chr4 199815716 199816052 -2512295 + GA-rich Low_complexity Low_complexity 1 337 0 429 177 0 0 chr4 199816079 199816192 -2512155 + GA-rich Low_complexity Low_complexity 2 114 0 712 148 7 22 chr4 199816247 199816404 -2511943 - AluSg/x SINE Alu 0 310 178 339 239 0 53 chr4 199817537 199817650 -2510697 - MER45C DNA AcHobo -363 590 484 591 192 0 0 chr4 199817988 199818165 -2510182 + GA-rich Low_complexity Low_complexity 2 178 0 255 141 8 41 chr4 199818186 199818307 -2510040 + HERV17 LTR ERV1 702 818 -7808 249 139 0 0 chr4 199818393 199818436 -2509911 + (CAA)n Simple_repeat Simple_repeat 2 44 0 185 0 0 39 chr4 199818637 199818663 -2509684 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1797 104 3 21 chr4 199819565 199819893 -2508454 - AluSx SINE Alu 0 323 1 1177 150 0 2 chr4 199820065 199822492 -2505855 - ALR/Alpha Satellite centromeric 0 2423 1 222 116 0 0 chr4 199822618 199822661 -2505686 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 320 114 0 0 chr4 199822676 199822720 -2505627 - AluSp/q SINE Alu -20 283 240 1484 150 44 14 chr4 199822825 199823118 -2505229 + AluSx SINE Alu 10 311 -1 393 117 0 0 chr4 199823208 199823268 -2505079 + (TC)n Simple_repeat Simple_repeat 1 60 0 958 255 4 22 chr4 199823271 199823397 -2504950 - L1PA13 LINE L1 -10 6153 6026 189 0 0 0 chr4 199823397 199823418 -2504929 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 958 255 4 22 chr4 199823418 199823562 -2504785 - L1PA13 LINE L1 -137 6026 5888 234 0 0 0 chr4 199824056 199824082 -2504265 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 486 0 0 0 chr4 199824097 199824151 -2504196 + (GAAA)n Simple_repeat Simple_repeat 2 55 0 782 201 132 92 chr4 199824190 199824298 -2504049 + AluJo SINE Alu 3 105 -197 2074 92 4 0 chr4 199824298 199824579 -2503768 + AluSp SINE Alu 1 282 -31 279 0 0 0 chr4 199824585 199824616 -2503731 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 782 201 132 92 chr4 199824616 199824773 -2503574 + AluJo SINE Alu 109 286 -16 347 175 0 0 chr4 199824849 199824906 -2503441 + AluJ/FLAM SINE Alu 4 60 -242 219 146 0 0 chr4 199824908 199824949 -2503398 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 1199 51 29 0 chr4 199824960 199825135 -2503212 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1182 154 1 0 chr4 199825237 199826458 -2501889 + ALR/Alpha Satellite centromeric 1 1222 -1 13781 38 2 0 chr4 199826469 199828939 -2499408 - L1PA3 LINE L1 0 6155 3680 1125 165 1 0 chr4 199828940 199830015 -2498332 + ALR/Alpha Satellite centromeric 1 1076 -45 1238 127 4 3 chr4 199830119 199834882 -2493465 + ALR/Alpha Satellite centromeric 1 4768 -75 639 150 118 8 chr4 199839051 199839178 -2489169 + AluJb SINE Alu 1 141 -171 34 45 0 15 chr4 199839199 199839217 -2489130 + AT_rich Low_complexity Low_complexity 1 18 -47 2230 73 7 3 chr4 199839217 199839503 -2488844 + AluY SINE Alu 1 287 -24 34 45 0 15 chr4 199839503 199839550 -2488797 + AT_rich Low_complexity Low_complexity 18 65 0 2040 128 3 0 chr4 199839561 199839857 -2488490 + AluSp SINE Alu 5 301 -12 603 172 0 130 chr4 199839944 199840113 -2488234 - AluJb SINE Alu -29 283 137 930 54 0 0 chr4 199840695 199840806 -2487541 - L1PA3 LINE L1 0 6155 6045 1237 125 4 3 chr4 199840907 199846327 -2482020 + ALR/Alpha Satellite centromeric 1 5424 -2 1251 125 3 3 chr4 199846427 199851693 -2476654 + ALR/Alpha Satellite centromeric 1 5265 -32 1241 125 4 3 chr4 199851794 199859129 -2469218 - ALR/Alpha Satellite centromeric -1 7337 1 1161 161 22 49 chr4 199859229 199859295 -2469052 + AluJo SINE Alu 77 143 -169 2458 66 7 0 chr4 199859295 199859600 -2468747 + AluY SINE Alu 1 307 -4 1161 161 22 49 chr4 199859600 199859756 -2468591 + AluJo SINE Alu 143 293 -19 7348 138 38 84 chr4 199859770 199859915 -2468432 - Tigger1 DNA MER2_type 0 2418 2268 185 0 40 0 chr4 199859915 199859940 -2468407 + (TTAA)n Simple_repeat Simple_repeat 2 27 0 7348 138 38 84 chr4 199859940 199860055 -2468292 - Tigger1 DNA MER2_type -150 2268 2149 3294 205 18 77 chr4 199860055 199861085 -2467262 - LTR5 LTR ERVK 0 969 1 7348 138 38 84 chr4 199861085 199861967 -2466380 - Tigger1 DNA MER2_type -269 2149 1357 1850 137 12 58 chr4 199861967 199862295 -2466052 - AluSq SINE Alu 0 313 1 7348 138 38 84 chr4 199862295 199862632 -2465715 - Tigger1 DNA MER2_type -1061 1357 1006 532 176 29 0 chr4 199862627 199862729 -2465618 - Tigger1 DNA MER2_type -1908 510 406 * 284 279 23 14 chr4 199863668 199863951 -2464396 - LSAU Satellite Satellite 0 498 142 696 205 0 0 chr4 199864003 199864241 -2464106 + GA-rich Low_complexity Low_complexity 1 238 0 216 260 0 0 chr4 199865337 199865387 -2462960 + CT-rich Low_complexity Low_complexity 1 50 0 1192 154 3 2 chr4 199867241 199879018 -2449329 - ALR/Alpha Satellite centromeric 0 13715 1950 3618 65 17 0 chr4 199879018 199879483 -2448864 - L1PA3 LINE L1 0 6155 5683 6949 46 0 17 chr4 199879021 199880417 -2447930 - L1PA3 LINE L1 -3 6152 4767 1192 154 3 2 chr4 199879483 199880944 -2447403 - ALR/Alpha Satellite centromeric -11765 1950 1 2337 36 0 0 chr4 199880949 199881230 -2447117 - L1PA3 LINE L1 0 6155 5875 13247 56 4 0 chr4 199881330 199883037 -2445310 - L1P LINE L1 -856 5290 3577 1116 165 5 2 chr4 199883051 199884915 -2443432 + ALR/Alpha Satellite centromeric 1 1870 -8 1057 174 6 4 chr4 199884929 199889519 -2438828 + ALR/Alpha Satellite centromeric 1 4595 -57 1023 174 4 2 chr4 199889619 199895407 -2432940 + ALR/Alpha Satellite centromeric 1 5797 -26 30485 43 1 0 chr4 199895410 199900007 -2428340 - L1PA3 LINE L1 0 6155 1557 9965 83 92 5 chr4 199900009 199901438 -2426909 + L1PA3 LINE L1 1 1553 -4593 1012 173 7 3 chr4 199901438 199902449 -2425898 + ALR/Alpha Satellite centromeric 1 1014 -52 221 56 0 28 chr4 199902450 199902486 -2425861 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 3677 64 2 0 chr4 199902486 199902952 -2425395 - L1PA3 LINE L1 -24 6131 5665 * 8147 52 1 0 chr4 199902949 199904008 -2424339 + L1P LINE L1 2931 3990 -2156 1132 168 2 1 chr4 199904008 199906111 -2422236 + ALR/Alpha Satellite centromeric 1 2104 -58 1162 169 5 3 chr4 199906231 199911568 -2416779 + ALR/Alpha Satellite centromeric 1 5347 -1 1116 173 5 4 chr4 199911672 199917109 -2411238 - ALR/Alpha Satellite centromeric 0 5445 1 194 0 39 0 chr4 199917130 199917156 -2411191 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 7388 32 0 0 chr4 199917156 199918299 -2410048 - L1PA3 LINE L1 -13 6142 4995 948 170 3 0 chr4 199918399 199918626 -2409721 + ALR/Alpha Satellite centromeric 1 227 -13 1176 159 2 0 chr4 199918639 199923220 -2405127 + ALR/Alpha Satellite centromeric 1 4591 -26 2977 58 0 0 chr4 199923232 199923611 -2404736 - L1PA2 LINE L1 -2 6153 5775 612 40 0 0 chr4 199923611 199923687 -2404660 + L1PA2 LINE L1 5712 5787 -368 1212 125 3 4 chr4 199923687 199926208 -2402139 + ALR/Alpha Satellite centromeric 1 2519 0 1181 169 5 3 chr4 199926310 199936897 -2391450 - ALR/Alpha Satellite centromeric 0 10609 1 1725 50 0 0 chr4 199936897 199937116 -2391231 - L1P LINE L1 -1535 4611 4393 2913 37 3 0 chr4 199937116 199937508 -2390839 + L1PA3 LINE L1 5802 6195 0 1044 166 6 4 chr4 199937508 199939446 -2388901 - ALR/Alpha Satellite centromeric 0 1942 1 2864 47 0 0 chr4 199939547 199939890 -2388457 - L1P LINE L1 -1820 4326 3984 1186 160 1 0 chr4 199939890 199942063 -2386284 - ALR/Alpha Satellite centromeric 0 2174 1 225 0 0 0 chr4 199942074 199942099 -2386248 + (TTA)n Simple_repeat Simple_repeat 3 27 0 7087 53 6 0 chr4 199942099 199943466 -2384881 - L1PA3 LINE L1 -18 6137 4767 1179 155 3 1 chr4 199943466 199954823 -2373524 - ALR/Alpha Satellite centromeric 0 11382 1 1249 142 4 3 chr4 199954923 199958101 -2370246 + ALR/Alpha Satellite centromeric 1 3180 0 1126 155 6 3 chr4 199958118 199962942 -2365405 + ALR/Alpha Satellite centromeric 1 4838 -14 1066 175 0 0 chr4 199963042 199964130 -2364217 + ALR/Alpha Satellite centromeric 1 1087 -59 1197 156 4 5 chr4 199964230 199969850 -2358497 - ALR/Alpha Satellite centromeric -6 5615 1 1367 59 0 0 chr4 199969850 199970020 -2358327 - AluY SINE Alu 0 311 142 1075 166 5 3 chr4 199970021 199975758 -2352589 - ALR/Alpha Satellite centromeric 0 5747 1 239 333 67 8 chr4 199975870 199975990 -2352357 - MIR3 SINE MIR -15 193 67 1102 219 128 27 chr4 199976487 199976672 -2351675 - L1MD2 LINE L1 -18 6341 6176 180 111 0 0 chr4 199976672 199976699 -2351648 + (TG)n Simple_repeat Simple_repeat 2 28 0 1102 219 128 27 chr4 199976699 199976919 -2351428 - L1MD2 LINE L1 -183 6176 5895 2401 38 3 0 chr4 199978040 199978332 -2350015 - L1PA3 LINE L1 -267 5888 5596 515 62 0 0 chr4 199978342 199978407 -2349940 + L1P LINE L1 4587 4651 -1495 446 215 5 0 chr4 199978828 199979056 -2349291 + GA-rich Low_complexity Low_complexity 1 229 0 669 190 0 0 chr4 199979114 199979293 -2349054 + GA-rich Low_complexity Low_complexity 2 180 0 532 185 0 22 chr4 199979332 199979516 -2348831 + GA-rich Low_complexity Low_complexity 1 180 0 480 182 0 0 chr4 199979539 199979671 -2348676 + GA-rich Low_complexity Low_complexity 1 132 0 18204 46 2 5 chr4 200179677 200182426 -2145921 - L1P2 LINE L1 -463 5692 2953 1085 150 1 2 chr4 200182534 200184841 -2143506 + ALR/Alpha Satellite centromeric 1 2306 -1 11202 40 2 1 chr4 200184841 200186309 -2142038 - L1P LINE L1 -2017 4129 2661 6526 93 0 51 chr4 200186309 200187615 -2140732 + L1PA3 LINE L1 4911 6168 0 1099 165 2 1 chr4 200187621 200191112 -2137235 + ALR/Alpha Satellite centromeric 1 3494 -112 1910 31 0 0 chr4 200191112 200191339 -2137008 + L1PA2 LINE L1 5927 6153 -2 931 177 2 0 chr4 200191378 200191750 -2136597 + ALR/Alpha Satellite centromeric 1 372 -13 929 175 5 2 chr4 200191851 200196485 -2131862 + ALR/Alpha Satellite centromeric 1 4650 -60 221 56 0 28 chr4 200196494 200196530 -2131817 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 3560 62 2 0 chr4 200196530 200196996 -2131351 - L1PA3 LINE L1 -24 6131 5665 * 7967 49 1 0 chr4 200196993 200198052 -2130295 + L1P LINE L1 2931 3990 -2156 794 139 12 8 chr4 200198052 200198225 -2130122 + ALR/Alpha Satellite centromeric 1 173 -12 853 204 2 0 chr4 200198237 200198535 -2129812 + ALR/Alpha Satellite centromeric 1 298 -45 971 172 6 1 chr4 200198635 200200542 -2127805 - ALR/Alpha Satellite centromeric -100 1916 1 2224 291 42 22 chr4 200200644 200202172 -2126175 - L1M1 LINE L1 -4082 2024 926 418 238 0 19 chr4 200202210 200202315 -2126032 - L1M1 LINE L1 -6921 109 7 270 262 75 28 chr4 200202461 200202568 -2125779 + MIR SINE MIR 80 191 -71 906 212 72 47 chr4 200202917 200203262 -2125085 - MER67C LTR ERV1 -3 511 173 360 258 50 33 chr4 200203844 200203964 -2124383 + MIR SINE MIR 23 144 -118 210 302 104 0 chr4 200204129 200204235 -2124112 - MIR SINE MIR -66 196 80 679 203 0 0 chr4 200205853 200205976 -2122371 - FLAM_C SINE Alu -18 125 3 224 371 26 17 chr4 200206395 200206511 -2121836 + MIR SINE MIR 24 140 -122 195 286 36 24 chr4 200206582 200206666 -2121681 + MIR SINE MIR 166 250 -12 195 352 67 0 chr4 200206688 200206793 -2121554 - MIR SINE MIR -71 191 80 228 77 58 0 chr4 200207280 200207332 -2121015 + (TA)n Simple_repeat Simple_repeat 2 56 0 1715 199 75 33 chr4 200207561 200208043 -2120304 - MLT1D LTR MaLR -3 502 1 940 212 52 108 chr4 200208364 200208751 -2119596 - MLT1A1 LTR MaLR 0 365 1 264 300 0 11 chr4 200209271 200209361 -2118986 + LTR67 LTR ERVL 434 522 -35 286 238 0 0 chr4 200210208 200210271 -2118076 - MLT1K LTR MaLR -10 578 516 1156 205 96 0 chr4 200210359 200210818 -2117529 - Charlie1b DNA MER1_type 0 523 24 1058 197 27 63 chr4 200211230 200211530 -2116817 - AluJo SINE Alu -17 295 7 1061 189 6 0 chr4 200211598 200211778 -2116569 - AluJb SINE Alu -23 289 109 1028 229 106 37 chr4 200211955 200212305 -2116042 - MLT1A2 LTR MaLR 0 374 1 254 275 135 48 chr4 200212606 200212835 -2115512 - MIR SINE MIR -13 249 1 228 286 52 44 chr4 200215873 200216008 -2112339 + MIR SINE MIR 36 173 -62 397 361 75 34 chr4 200216104 200216489 -2111858 + L2 LINE L2 1499 1899 -1415 1085 200 130 3 chr4 200216497 200216827 -2111520 - MLT1B LTR MaLR -10 380 9 1008 76 6 19 chr4 200216870 200217028 -2111319 + (TTTC)n Simple_repeat Simple_repeat 3 158 0 643 127 60 0 chr4 200217028 200217178 -2111169 + CT-rich Low_complexity Low_complexity 4 162 0 354 111 0 19 chr4 200217178 200217232 -2111115 + (TTCC)n Simple_repeat Simple_repeat 2 54 0 304 271 76 8 chr4 200217239 200217357 -2110990 - L1PB4 LINE L1 -3 6153 6028 601 288 133 89 chr4 200217429 200217515 -2110832 + L2 LINE L2 2079 2160 -1154 1379 132 46 0 chr4 200217515 200217734 -2110613 - MER30 DNA MER1_type -1 229 1 601 288 133 89 chr4 200217734 200218299 -2110048 + L2 LINE L2 2160 2759 -555 261 353 69 0 chr4 200218309 200218411 -2109936 + L2 LINE L2 3186 3294 -19 327 288 250 0 chr4 200218587 200218719 -2109628 + MER5A DNA MER1_type 18 182 -7 296 45 23 0 chr4 200219183 200219227 -2109120 + MADE1 DNA Mariner 34 78 -2 206 79 0 26 chr4 200219255 200219293 -2109054 + (TTTTTG)n Simple_repeat Simple_repeat 1 37 0 191 241 76 25 chr4 200219997 200220076 -2108271 - MIR SINE MIR -68 194 112 865 140 18 126 chr4 200220148 200220199 -2108148 + L1MB4 LINE L1 5451 5506 -674 1491 119 69 89 chr4 200220199 200220502 -2107845 + AluSx SINE Alu 1 297 -15 865 140 18 126 chr4 200220502 200220756 -2107591 + L1MB4 LINE L1 5506 5700 -480 386 226 0 0 chr4 200220776 200220860 -2107487 - 7SLRNA srpRNA srpRNA -7 313 230 1248 231 8 0 chr4 200221082 200221338 -2107009 - 7SLRNA srpRNA srpRNA -60 260 3 1859 184 35 13 chr4 200221339 200221775 -2106572 + L1MB4 LINE L1 5685 6119 -61 10550 167 19 12 chr4 200222673 200222854 -2105493 - Ricksha DNA DNA -15 3231 3053 2141 124 0 0 chr4 200222854 200223152 -2105195 + AluY SINE Alu 1 298 -13 10550 167 19 12 chr4 200223152 200225060 -2103287 - Ricksha DNA DNA -193 3053 1189 1589 160 3 0 chr4 200225062 200225344 -2103003 - Ricksha DNA DNA -2745 501 219 710 165 0 0 chr4 200225390 200225499 -2102848 + FLAM_C SINE Alu 3 111 -32 2479 112 19 19 chr4 200225500 200225875 -2102472 + THE1C LTR MaLR 1 375 0 9257 134 40 6 chr4 200225875 200227403 -2100944 + THE1C-int LTR MaLR 1 1580 0 2031 125 96 6 chr4 200227403 200227747 -2100600 + THE1C LTR MaLR 1 375 0 511 167 0 0 chr4 200227768 200227858 -2100489 - Ricksha DNA DNA -1950 96 7 261 220 0 0 chr4 200228436 200228486 -2099861 - MER63 DNA MER1_type -335 726 677 399 270 209 11 chr4 200228587 200228839 -2099508 + L2 LINE L2 2763 3048 -265 249 261 0 0 chr4 200228842 200228907 -2099440 - MLT1E2 LTR MaLR 0 626 562 927 189 83 30 chr4 200228911 200229175 -2099172 - MLT1D LTR MaLR -158 347 70 530 297 25 51 chr4 200229214 200229490 -2098857 + L2 LINE L2 3045 3313 0 666 232 0 0 chr4 200229706 200229831 -2098516 - FLAM_C SINE Alu -18 125 1 207 69 0 0 chr4 200230127 200230156 -2098191 + (T)n Simple_repeat Simple_repeat 1 29 0 294 29 0 0 chr4 200231540 200231575 -2096772 + (TC)n Simple_repeat Simple_repeat 2 36 0 279 0 0 0 chr4 200231574 200231605 -2096742 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 190 256 6 6 chr4 200234035 200234124 -2094223 - L2 LINE L2 -220 3052 2973 243 358 20 20 chr4 200235578 200235726 -2092621 + L2 LINE L2 2694 2841 -473 1490 282 150 40 chr4 200236482 200236988 -2091359 + L2 LINE L2 2166 2783 -530 1740 126 4 0 chr4 200236988 200237235 -2091112 - AluSx SINE Alu -7 305 58 1490 282 150 40 chr4 200237235 200237486 -2090861 + L2 LINE L2 2783 3005 -308 2180 64 0 0 chr4 200237504 200237785 -2090562 - L1PA4 LINE L1 -3 6152 5872 11532 60 5 0 chr4 200237885 200239487 -2088860 - L1P LINE L1 -2569 3577 1968 16831 55 6 0 chr4 200239773 200242724 -2085623 - L1PA3 LINE L1 0 6155 3199 13596 82 28 0 chr4 200242726 200244652 -2083695 - L1P LINE L1 -4167 1979 1 362 264 14 14 chr4 200244661 200244801 -2083546 - L1M3 LINE L1 -364 5816 5677 1297 179 0 0 chr4 200244870 200245071 -2083276 + AluJb SINE Alu 3 203 -109 6473 205 55 13 chr4 200245071 200245850 -2082497 - L1P LINE L1 -736 5425 4680 1822 145 21 0 chr4 200245850 200246132 -2082215 - AluSc SINE Alu -21 288 1 6473 205 55 13 chr4 200246132 200247015 -2081332 - L1P LINE L1 -1481 4680 3697 1220 132 11 0 chr4 200247016 200247205 -2081142 - AluY SINE Alu 0 311 121 1443 191 12 27 chr4 200247205 200247541 -2080806 - L1P LINE L1 -2463 3683 3353 1186 275 34 31 chr4 200247595 200248301 -2080046 - L1M3 LINE L1 -1131 5015 4308 1371 147 5 0 chr4 200248520 200248724 -2079623 + AluSq SINE Alu 1 205 -108 985 312 36 32 chr4 200248906 200249348 -2078999 + LTR40a LTR ERVL 72 515 -4 617 200 7 26 chr4 200249637 200249792 -2078555 - ALR/Alpha Satellite centromeric -20 152 1 * 1136 137 6 0 chr4 200249656 200251397 -2076950 - ALR/Alpha Satellite centromeric 0 1750 1 1129 161 2 0 chr4 200251500 200258017 -2070330 + ALR/Alpha Satellite centromeric 1 6529 -74 28890 61 4 1 chr4 200258026 200264157 -2064190 + L1PA3 LINE L1 9 6152 -3 1174 162 4 1 chr4 200264174 200278330 -2050017 + ALR/Alpha Satellite centromeric 1 14200 -2 3478 50 0 0 chr4 200278330 200278766 -2049581 - L1PA3 LINE L1 0 6155 5720 1165 158 4 1 chr4 200278775 200284212 -2044135 + ALR/Alpha Satellite centromeric 1 5453 -13 1155 168 6 2 chr4 200284225 200285308 -2043039 + ALR/Alpha Satellite centromeric 1 1078 -17945 198 0 0 0 chr4 200285308 200285330 -2043017 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6815 50 0 0 chr4 200285330 200286195 -2042152 + L1PA3 LINE L1 5310 6174 0 1155 168 6 2 chr4 200286195 200303103 -2025244 + ALR/Alpha Satellite centromeric 1077 18956 -67 6396 47 0 0 chr4 200303103 200303887 -2024460 - L1PA3 LINE L1 0 6155 5372 * 21897 44 2 0 chr4 200303884 200306636 -2021711 + L1PA3 LINE L1 2597 5352 -794 1192 180 3 1 chr4 200306636 200311471 -2016876 + ALR/Alpha Satellite centromeric 1 4840 -3 1097 167 3 2 chr4 200311482 200317103 -2011244 + ALR/Alpha Satellite centromeric 1 5631 -10 1163 165 2 1 chr4 200317115 200336035 -1992312 + ALR/Alpha Satellite centromeric 1 19819 -2925 7070 41 2 0 chr4 200336035 200336904 -1991443 + L1PA3 LINE L1 5282 6152 -3 1163 165 2 1 chr4 200336904 200339788 -1988559 + ALR/Alpha Satellite centromeric 19819 22698 -46 296 238 98 119 chr4 200542972 200543307 -1785040 + MLT1L LTR MaLR 110 537 -78 2627 30 3 0 chr4 200543307 200543607 -1784740 + AluY SINE Alu 1 301 -10 296 238 98 119 chr4 200543607 200543658 -1784689 + MLT1L LTR MaLR 537 588 -27 4293 205 51 36 chr4 200544168 200545131 -1783216 - L1MA9 LINE L1 -38 6274 5327 8167 22 13 0 chr4 200545131 200546257 -1782090 - L1PA3 LINE L1 -1 6154 5023 4293 205 51 36 chr4 200546257 200546626 -1781721 - L1MA9 LINE L1 -985 5327 4965 1955 128 0 20 chr4 200546626 200546922 -1781425 - AluSg SINE Alu -20 290 1 4293 205 51 36 chr4 200546922 200547533 -1780814 - L1MA9 LINE L1 -1347 4965 4295 222 191 0 0 chr4 200548277 200548324 -1780023 + GA-rich Low_complexity Low_complexity 1 47 0 293 131 16 0 chr4 200548364 200548425 -1779922 + GA-rich Low_complexity Low_complexity 1 62 0 219 273 0 0 chr4 200549249 200549304 -1779043 + A-rich Low_complexity Low_complexity 1 55 0 1905 221 10 10 chr4 200550473 200550885 -1777462 - L1MA9 LINE L1 -1812 4334 3923 309 264 11 11 chr4 200550950 200551041 -1777306 - MER81 DNA DNA -1 113 23 183 336 48 19 chr4 200552109 200552213 -1776134 - L2 LINE L2 -233 3039 2933 229 191 76 143 chr4 200552529 200552634 -1775713 - L2 LINE L2 0 3272 3175 691 183 0 24 chr4 200552656 200552782 -1775565 + FRAM SINE Alu 46 168 -8 538 293 170 16 chr4 200552903 200553372 -1774975 - L2 LINE L2 -115 3198 2668 234 217 22 0 chr4 200553607 200553653 -1774694 - MIR3 SINE MIR -52 156 110 3211 99 12 10 chr4 200553653 200554137 -1774210 + L1P LINE L1 4916 5400 -746 3439 71 9 13 chr4 200554146 200554596 -1773751 - LTR7 LTR ERV1 -2 448 1 2166 77 54 0 chr4 200554596 200554909 -1773438 - HERVH LTR ERV1 0 7713 7384 1000 107 0 7 chr4 200554910 200555060 -1773287 - HERVH LTR ERV1 -1965 5748 5600 2802 157 7 3 chr4 200555061 200555668 -1772679 - HERVH LTR ERV1 -2564 5149 4488 2022 112 6 15 chr4 200555670 200556000 -1772347 - HERVH LTR ERV1 -3720 3993 3667 297 0 0 0 chr4 200556166 200556199 -1772148 + (CA)n Simple_repeat Simple_repeat 1 33 0 465 285 138 28 chr4 200556316 200556534 -1771813 + MIR SINE MIR 22 262 0 196 75 25 25 chr4 200556660 200556700 -1771647 + (CA)n Simple_repeat Simple_repeat 1 40 0 786 120 11 33 chr4 200556715 200556899 -1771448 + (CA)n Simple_repeat Simple_repeat 1 180 0 215 332 102 71 chr4 200557500 200557696 -1770651 + MIR3 SINE MIR 4 205 -3 1521 171 79 34 chr4 200559078 200559434 -1768913 - MLT1A2 LTR MaLR -2 372 1 245 244 26 70 chr4 200560352 200560467 -1767880 + HAL1 LINE L1 1266 1375 -1132 2279 97 0 7 chr4 200560477 200560776 -1767571 + AluSc SINE Alu 1 297 -12 40 73 0 0 chr4 200561108 200561190 -1767157 + AT_rich Low_complexity Low_complexity 1 82 0 1171 158 0 11 chr4 200561722 200561905 -1766442 + AluJo SINE Alu 1 181 -131 21 0 0 0 chr4 200561918 200561939 -1766408 + AT_rich Low_complexity Low_complexity 1 21 0 656 249 62 31 chr4 200563200 200563425 -1764922 - MIR SINE MIR -29 233 2 2417 213 94 10 chr4 200563833 200564515 -1763832 - Charlie2 DNA MER1_type -255 2607 1869 2794 22 0 0 chr4 200564515 200564826 -1763521 - AluY SINE Alu 0 311 1 438 272 153 35 chr4 200564864 200565151 -1763196 - Charlie2 DNA MER1_type -2452 330 10 1037 206 49 9 chr4 200565693 200565916 -1762431 - MLT1B LTR MaLR 0 390 159 1475 231 72 22 chr4 200565916 200566392 -1761955 + L1ME1 LINE L1 5678 6334 0 5382 123 2 17 chr4 200569228 200570071 -1758276 - L1PA13 LINE L1 0 6163 5333 731 306 213 14 chr4 200570539 200570827 -1757520 + L2 LINE L2 2431 2660 -654 670 242 44 66 chr4 200570827 200571054 -1757293 - MER58A DNA MER1_type -2 222 1 731 306 213 14 chr4 200571054 200571197 -1757150 + L2 LINE L2 2660 2948 -366 756 264 123 32 chr4 200571221 200571674 -1756673 - MLT1G1 LTR MaLR -4 578 82 368 291 153 39 chr4 200571715 200571997 -1756350 + L2 LINE L2 2995 3308 -5 21 57 0 0 chr4 200572368 200572403 -1755944 + AT_rich Low_complexity Low_complexity 1 35 0 2063 129 31 0 chr4 200572730 200573016 -1755331 + AluSx SINE Alu 1 295 -17 228 144 11 56 chr4 200573079 200573169 -1755178 + (TA)n Simple_repeat Simple_repeat 2 87 0 300 272 105 72 chr4 200573377 200573836 -1754511 - MLT1J LTR MaLR -6 505 32 459 335 0 0 chr4 200574058 200574372 -1753975 + (CA)n Simple_repeat Simple_repeat 1 314 0 * 463 326 0 0 chr4 200574343 200574564 -1753783 + (CACG)n Simple_repeat Simple_repeat 1 221 0 485 301 7 15 chr4 200574604 200575033 -1753314 + (CACG)n Simple_repeat Simple_repeat 1 425 0 1450 120 0 5 chr4 200575294 200575502 -1752845 + AluSg/x SINE Alu 90 296 -14 2210 89 0 4 chr4 200576473 200576793 -1751554 - AluSc SINE Alu 0 319 1 251 264 0 0 chr4 200576795 200576848 -1751499 - MER58B DNA MER1_type -9 332 280 366 336 88 5 chr4 200577233 200577419 -1750928 - MIR SINE MIR -21 241 40 2252 113 0 0 chr4 200577460 200577769 -1750578 + AluSg SINE Alu 1 309 -1 1191 221 80 27 chr4 200577823 200578122 -1750225 + MER58B DNA MER1_type 27 341 0 471 316 100 32 chr4 200578261 200578692 -1749655 + L2 LINE L2 1701 2160 -1154 22 0 0 0 chr4 200579193 200579215 -1749132 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 200579710 200579733 -1748614 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr4 200580244 200580277 -1748070 + AT_rich Low_complexity Low_complexity 1 33 0 443 326 62 16 chr4 200580425 200580667 -1747680 - L3 LINE CR1 -5 1572 1320 1048 211 42 57 chr4 200580682 200580947 -1747400 - AluJo SINE Alu -3 309 49 269 326 22 11 chr4 200581070 200581162 -1747185 + MIR SINE MIR 15 107 -155 589 244 31 0 chr4 200582890 200583017 -1745330 + MLT1A2 LTR MaLR 1 131 -243 451 236 0 0 chr4 200583008 200583097 -1745250 + MLT1A2 LTR MaLR 43 131 -243 * 1568 189 40 16 chr4 200583088 200583410 -1744937 + MLT1A2 LTR MaLR 43 372 -2 389 323 8 0 chr4 200583410 200583543 -1744804 - MIR SINE MIR -5 257 124 895 245 104 49 chr4 200583559 200583906 -1744441 - MSTD LTR MaLR 0 396 31 * 2302 117 34 28 chr4 200583904 200584256 -1744091 - THE1B LTR MaLR -10 354 1 186 267 59 59 chr4 200584262 200584363 -1743984 - MIR SINE MIR -121 141 41 342 194 0 0 chr4 200584562 200584634 -1743713 + (TGGA)n Simple_repeat Simple_repeat 3 74 0 186 294 185 0 chr4 200585193 200585285 -1743062 + L2 LINE L2 3195 3303 -10 1574 183 45 85 chr4 200586234 200586703 -1741644 - LTR7 LTR ERV1 0 450 1 7911 35 10 0 chr4 200586758 200587892 -1740455 - L1PA4 LINE L1 -1 6154 5017 3318 44 5 0 chr4 200587891 200588299 -1740048 + L1PA4 LINE L1 4598 5007 -1139 183 324 50 50 chr4 200588496 200588675 -1739672 - MIR3 SINE MIR -11 197 19 204 328 0 0 chr4 200591016 200591077 -1737270 - L2 LINE L2 -1378 1936 1876 297 331 69 56 chr4 200591405 200591565 -1736782 + L2 LINE L2 2937 3098 -174 372 226 0 130 chr4 200592323 200592469 -1735878 + MER20 DNA MER1_type 5 131 -88 1380 196 30 77 chr4 200592470 200592872 -1735475 - MLT1B LTR MaLR 0 390 8 1364 241 60 20 chr4 200592876 200593274 -1735073 - MLT1B-int LTR MaLR -5 1366 953 495 167 0 0 chr4 200593459 200593549 -1734798 - MSTC LTR MaLR -322 106 17 1235 164 25 43 chr4 200593570 200593851 -1734496 + MSTB2 LTR MaLR 181 456 -1 1048 253 59 7 chr4 200593854 200594074 -1734273 - MLT2D LTR ERVL -94 320 113 249 33 0 0 chr4 200594074 200594104 -1734243 + (CA)n Simple_repeat Simple_repeat 2 31 0 216 0 0 0 chr4 200594103 200594127 -1734220 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 1048 253 59 7 chr4 200594104 200594210 -1734137 - MLT2D LTR ERVL -301 113 1 457 183 0 0 chr4 200594217 200594299 -1734048 + MER20 DNA MER1_type 137 218 -1 180 0 0 0 chr4 200596099 200596119 -1732228 + (TAAAAA)n Simple_repeat Simple_repeat 3 22 0 1726 152 53 51 chr4 200596477 200596851 -1731496 + THE1C LTR MaLR 1 375 0 2367 138 151 0 chr4 200596852 200597316 -1731031 + THE1C-int LTR MaLR 2 535 -1045 * 5301 45 0 3 chr4 200597282 200597976 -1730371 - L1P LINE L1 -891 5255 4564 5013 12 0 0 chr4 200597976 200598534 -1729813 + L1PA2 LINE L1 5589 6153 -2 4055 131 74 19 chr4 200598534 200599528 -1728819 + THE1C-int LTR MaLR 484 1580 0 1400 171 98 51 chr4 200599528 200599884 -1728463 + THE1C LTR MaLR 1 373 -2 453 110 24 12 chr4 200600019 200600101 -1728246 - L1MD3 LINE L1 0 7995 7913 393 238 0 0 chr4 200600102 200600182 -1728165 + MER93a LTR ERV1 1 80 -322 632 203 49 0 chr4 200600216 200600359 -1727988 + MER93b LTR ERV1 188 337 -36 288 224 53 0 chr4 200600371 200600447 -1727900 - L1MD3 LINE L1 -80 7915 7836 733 238 60 20 chr4 200600453 200600701 -1727646 - MLT1C LTR MaLR -4 463 206 747 259 180 5 chr4 200600741 200601108 -1727239 - L1MD3 LINE L1 -160 7835 7405 239 307 27 0 chr4 200601115 200601190 -1727157 - MLT1C LTR MaLR -445 122 46 960 231 37 17 chr4 200601195 200601489 -1726858 - L1MC3 LINE L1 -682 7103 6804 240 163 0 0 chr4 200602263 200602306 -1726041 + (CA)n Simple_repeat Simple_repeat 2 44 0 2368 269 45 16 chr4 200604151 200604572 -1723775 - L1MCa LINE L1 -3980 2765 2358 1967 218 73 24 chr4 200604572 200605022 -1723325 - MER70A LTR ERVL 0 472 1 2368 269 45 16 chr4 200605022 200606150 -1722197 - L1MCa LINE L1 -4387 2358 979 211 175 29 39 chr4 200606229 200606332 -1722015 + (CATATA)n Simple_repeat Simple_repeat 3 104 0 2068 289 40 20 chr4 200606339 200607233 -1721114 - L1MCa LINE L1 -5133 912 1 240 22 43 43 chr4 200607606 200607652 -1720695 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 252 122 0 0 chr4 200607690 200607731 -1720616 + (TG)n Simple_repeat Simple_repeat 2 42 0 342 271 104 0 chr4 200607747 200607843 -1720504 + LTR33 LTR ERVL 27 132 -389 2181 226 25 59 chr4 200609410 200610037 -1718310 + MER82 DNA MER2_type 47 652 -1 243 88 0 0 chr4 200610038 200610072 -1718275 + (TG)n Simple_repeat Simple_repeat 1 34 0 213 232 18 18 chr4 200610259 200610315 -1718032 - L2 LINE L2 -219 3053 2998 273 356 119 29 chr4 200610547 200610892 -1717455 - L2 LINE L2 -1108 2206 1831 192 309 15 15 chr4 200611214 200611282 -1717065 + L2 LINE L2 3209 3276 -37 285 326 11 0 chr4 200611482 200611574 -1716773 + L2 LINE L2 3221 3313 0 26 0 0 0 chr4 200611579 200611605 -1716742 + AT_rich Low_complexity Low_complexity 1 26 0 1578 266 93 26 chr4 200611984 200612639 -1715708 + L1ME2 LINE L1 5395 6093 -71 30 27 0 0 chr4 200612766 200612803 -1715544 + AT_rich Low_complexity Low_complexity 1 37 0 253 245 9 57 chr4 200613003 200613053 -1715294 - LTR67 LTR ERVL -7 550 506 1218 242 30 25 chr4 200613053 200613421 -1714926 + MLT1A2 LTR MaLR 1 370 -4 253 245 9 57 chr4 200613421 200613476 -1714871 - LTR67 LTR ERVL -51 506 450 213 261 135 18 chr4 200614319 200614430 -1713917 + MIR3 SINE MIR 82 205 -3 192 77 0 0 chr4 200618493 200618519 -1709828 + (CA)n Simple_repeat Simple_repeat 2 27 0 306 281 16 16 chr4 200618538 200618659 -1709688 + (CA)n Simple_repeat Simple_repeat 1 121 0 222 150 0 0 chr4 200618675 200618715 -1709632 + (CA)n Simple_repeat Simple_repeat 2 41 0 234 270 14 14 chr4 200618731 200618805 -1709542 + (CA)n Simple_repeat Simple_repeat 2 75 0 211 219 12 12 chr4 200618821 200618903 -1709444 + (CA)n Simple_repeat Simple_repeat 2 83 0 263 292 17 25 chr4 200618922 200619042 -1709305 + (CA)n Simple_repeat Simple_repeat 1 119 0 282 319 0 0 chr4 200619056 200619128 -1709219 - MIR SINE MIR -161 101 30 661 244 26 31 chr4 200619249 200619442 -1708905 + MIR SINE MIR 71 262 0 245 250 0 16 chr4 200620134 200620198 -1708149 + MER20B DNA MER1_type 114 176 -607 303 28 0 0 chr4 200620363 200620399 -1707948 + (CA)n Simple_repeat Simple_repeat 1 36 0 358 281 8 33 chr4 200621010 200621131 -1707216 - MIR3 SINE MIR -21 187 70 2664 66 0 3 chr4 200621592 200621940 -1706407 + L1PA5 LINE L1 5808 6154 0 528 37 49 0 chr4 200621945 200622027 -1706320 + (GAAA)n Simple_repeat Simple_repeat 2 87 0 21 0 0 0 chr4 200623938 200623959 -1704388 + AT_rich Low_complexity Low_complexity 1 21 0 408 285 15 44 chr4 200624408 200624545 -1703802 + MIR SINE MIR 29 161 -101 323 293 57 0 chr4 200624582 200624688 -1703659 + MIR SINE MIR 139 250 -12 2040 220 40 77 chr4 200624711 200625428 -1702919 + LTR8 LTR ERV1 1 691 0 24 32 0 0 chr4 200625554 200625585 -1702762 + AT_rich Low_complexity Low_complexity 1 31 0 1770 168 3 3 chr4 200625742 200626039 -1702308 - AluSx SINE Alu -7 305 9 267 375 71 30 chr4 200627890 200628157 -1700190 + L2 LINE L2 2306 2583 -731 3269 232 80 18 chr4 200628271 200629166 -1699181 - L1M1 LINE L1 -6591 974 24 1600 201 139 3 chr4 200629245 200629619 -1698728 - MSTB1 LTR MaLR -4 428 4 720 296 59 36 chr4 200629628 200630420 -1697927 - L1MEd LINE L1 -4632 1752 1024 4986 150 107 57 chr4 200632513 200633686 -1694661 - Tigger3b DNA MER2_type 0 1231 1 2009 129 0 0 chr4 200633788 200634091 -1694256 + AluSx SINE Alu 14 316 0 61 15 0 0 chr4 200634257 200634325 -1694022 + AT_rich Low_complexity Low_complexity 1 68 0 193 206 47 9 chr4 200634946 200635053 -1693294 + CT-rich Low_complexity Low_complexity 3 113 0 267 241 0 0 chr4 200635762 200635820 -1692527 + L2 LINE L2 3256 3313 0 237 156 0 0 chr4 200636756 200636801 -1691546 - LTR66 LTR ERVL -171 439 395 228 256 51 8 chr4 200636823 200636940 -1691407 - L1ME LINE L1 -274 5847 5726 294 232 12 30 chr4 200638391 200638555 -1689792 + CT-rich Low_complexity Low_complexity 3 163 0 192 149 0 0 chr4 200638713 200638760 -1689587 + (TA)n Simple_repeat Simple_repeat 2 48 0 2396 88 0 3 chr4 200639242 200639538 -1688809 + AluSx SINE Alu 2 296 -16 207 0 0 0 chr4 200640936 200640959 -1687388 + (T)n Simple_repeat Simple_repeat 1 23 0 208 240 20 0 chr4 200641019 200641069 -1687278 - L2 LINE L2 -1 3312 3262 1666 181 134 66 chr4 200641284 200641694 -1686653 + MLT2B2 LTR ERVL 1 438 -77 222 37 0 0 chr4 200641694 200641721 -1686626 + (TC)n Simple_repeat Simple_repeat 2 28 0 333 0 0 0 chr4 200641721 200641758 -1686589 + (CA)n Simple_repeat Simple_repeat 2 38 0 383 281 223 56 chr4 200642014 200642441 -1685906 + L2 LINE L2 64 561 -2753 1804 139 68 9 chr4 200642455 200642779 -1685568 + MER61A LTR ERV1 1 343 0 332 298 53 0 chr4 200642831 200642945 -1685402 + L2 LINE L2 2030 2149 -1165 241 200 10 110 chr4 200643024 200643124 -1685223 + L2 LINE L2 2422 2511 -803 301 305 151 32 chr4 200643280 200643732 -1684615 + L2 LINE L2 2726 3213 -100 51 65 0 0 chr4 200643956 200644049 -1684298 + AT_rich Low_complexity Low_complexity 1 93 0 235 346 57 31 chr4 200644071 200644299 -1684048 - MIR SINE MIR -11 251 18 2308 157 31 14 chr4 200645346 200645767 -1682580 + MSTA LTR MaLR 1 428 0 8861 175 43 2 chr4 200645767 200647352 -1680995 + MSTA-int LTR MaLR 1 1651 0 2325 167 31 9 chr4 200647353 200647772 -1680575 + MSTA LTR MaLR 1 428 0 354 297 108 16 chr4 200648042 200648227 -1680120 + MIR SINE MIR 15 216 -46 21 0 0 0 chr4 200648571 200648592 -1679755 + AT_rich Low_complexity Low_complexity 1 21 0 608 287 172 40 chr4 200648602 200648927 -1679420 + MLT1G1 LTR MaLR 1 387 -208 699 250 89 51 chr4 200649375 200649611 -1678736 + MLT1G1 LTR MaLR 324 568 -27 2168 113 3 0 chr4 200650674 200650958 -1677389 + AluSx SINE Alu 1 285 -27 408 20 0 0 chr4 200650958 200651007 -1677340 + (GA)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr4 200651922 200651944 -1676403 + AT_rich Low_complexity Low_complexity 1 22 0 204 396 13 22 chr4 200652224 200652454 -1675893 + MIR SINE MIR 34 261 -1 611 280 42 42 chr4 200652519 200652755 -1675592 + MIR SINE MIR 27 262 0 257 203 14 14 chr4 200652907 200652976 -1675371 + MIR SINE MIR 91 159 -103 265 301 0 16 chr4 200652990 200653113 -1675234 + (TA)n Simple_repeat Simple_repeat 1 121 0 24 77 0 0 chr4 200653183 200653235 -1675112 + AT_rich Low_complexity Low_complexity 1 52 0 326 52 21 83 chr4 200654706 200654802 -1673545 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 295 214 36 24 chr4 200654802 200654886 -1673461 + GA-rich Low_complexity Low_complexity 4 88 0 912 127 6 22 chr4 200654888 200655069 -1673278 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 852 129 22 11 chr4 200655088 200655266 -1673081 + GA-rich Low_complexity Low_complexity 1 180 0 891 121 11 22 chr4 200655304 200655486 -1672861 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 519 170 35 0 chr4 200655489 200655630 -1672717 + GA-rich Low_complexity Low_complexity 4 149 0 2147 118 3 0 chr4 200657113 200657417 -1670930 - AluSx SINE Alu -7 305 1 548 292 104 57 chr4 200658096 200658517 -1669830 + MLT1K LTR MaLR 125 565 -23 21 0 0 0 chr4 200658750 200658771 -1669576 + AT_rich Low_complexity Low_complexity 1 21 0 467 330 140 6 chr4 200658836 200659151 -1669196 + L2 LINE L2 2955 3311 -2 19512 93 10 63 chr4 200659550 200662704 -1665643 - HERVH LTR ERV1 -4726 2987 1 3457 69 2 2 chr4 200662706 200663154 -1665193 - LTR7 LTR ERV1 -2 448 1 5511 102 3 3 chr4 200663154 200663920 -1664427 + L1PA8 LINE L1 5404 6169 -3 22 56 0 0 chr4 200664106 200664142 -1664205 + AT_rich Low_complexity Low_complexity 1 36 0 614 241 85 7 chr4 200664401 200664542 -1663805 - MER8 DNA MER2_type -7 232 81 231 273 45 23 chr4 200664584 200664672 -1663675 - MIR SINE MIR -159 103 14 1143 179 83 133 chr4 200664893 200665300 -1663047 + MER47B DNA MER2_type 32 418 0 7390 38 1 0 chr4 200665681 200666713 -1661634 + L1PA4 LINE L1 5093 6125 -30 216 0 0 0 chr4 200666713 200666737 -1661610 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 183 42 0 0 chr4 200667844 200667868 -1660479 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1866 160 0 0 chr4 200667871 200668158 -1660189 - AluSx SINE Alu -23 289 3 3417 181 10 30 chr4 200670157 200670836 -1657511 - L1MB2 LINE L1 -52 6119 5454 234 204 0 19 chr4 200676621 200676675 -1651672 + LTR33A LTR ERVL 446 498 -25 21 0 0 0 chr4 200676858 200676879 -1651468 + AT_rich Low_complexity Low_complexity 1 21 0 697 197 0 44 chr4 200678890 200679027 -1649320 + FLAM_C SINE Alu 2 132 -11 26 30 0 0 chr4 200679731 200679764 -1648583 + AT_rich Low_complexity Low_complexity 1 33 0 363 194 0 0 chr4 200683064 200683172 -1645175 + (CA)n Simple_repeat Simple_repeat 2 109 0 612 197 0 0 chr4 200683206 200683513 -1644834 + (CA)n Simple_repeat Simple_repeat 1 307 0 1784 202 53 9 chr4 200684186 200684245 -1644102 - L1MB7 LINE L1 -66 6118 6060 1321 220 72 86 chr4 200684245 200684431 -1643916 - L1MD3 LINE L1 -497 6179 5992 1448 165 78 35 chr4 200684431 200684777 -1643570 - MER46B DNA MER2_type 0 236 1 1321 220 72 86 chr4 200684777 200685412 -1642935 - L1MD3 LINE L1 -684 5992 5800 4498 271 46 10 chr4 200685455 200687221 -1641126 - L1MD3 LINE L1 -1062 5582 3752 610 255 66 28 chr4 200687220 200687524 -1640823 - L1MD3 LINE L1 -4586 2060 1769 * 417 39 0 0 chr4 200687524 200687575 -1640772 + (TG)n Simple_repeat Simple_repeat 1 51 0 610 255 66 28 chr4 200687575 200688520 -1639827 - L1MD3 LINE L1 -4877 1769 679 198 182 26 13 chr4 200689127 200689204 -1639143 + (TA)n Simple_repeat Simple_repeat 1 78 0 371 179 74 32 chr4 200690005 200690100 -1638247 + MER94 DNA DNA 12 110 -24 2344 126 55 2 chr4 200692802 200693224 -1635123 - LTR56 LTR ERV1 0 445 2 344 345 69 17 chr4 200693273 200693563 -1634784 - L2 LINE L2 -21 3292 2988 202 288 0 17 chr4 200694222 200694281 -1634066 + L2 LINE L2 3187 3244 -69 224 294 172 37 chr4 200695381 200695433 -1632914 - MIR SINE MIR 0 262 218 711 225 162 60 chr4 200695433 200695798 -1632549 - MER57A LTR ERV1 0 403 2 224 294 172 37 chr4 200695798 200695908 -1632439 - MIR SINE MIR -44 218 78 446 0 19 0 chr4 200696720 200696774 -1631573 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 189 0 0 0 chr4 200696774 200696795 -1631552 + (GA)n Simple_repeat Simple_repeat 1 21 0 325 233 8 53 chr4 200697395 200697528 -1630819 - L1MC4 LINE L1 0 8042 7916 317 189 27 0 chr4 200697562 200697636 -1630711 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 22 70 0 0 chr4 200697709 200697752 -1630595 + AT_rich Low_complexity Low_complexity 1 43 0 2248 256 65 39 chr4 200697884 200698861 -1629486 - L1MC4 LINE L1 -372 7670 6668 236 194 92 51 chr4 200699319 200699417 -1628930 + MER34 LTR ERV1 435 536 -6 333 268 65 72 chr4 200699424 200699577 -1628770 - L1MC4 LINE L1 -1399 6643 6492 12236 210 25 14 chr4 200699609 200702207 -1626140 - L1PB3 LINE L1 -7 6863 4297 2508 124 14 3 chr4 200702207 200702578 -1625769 + THE1C LTR MaLR 1 375 0 10049 110 35 37 chr4 200702578 200704161 -1624186 + THE1C-int LTR MaLR 1 1580 0 1856 169 75 6 chr4 200704164 200704512 -1623835 + THE1C LTR MaLR 4 375 0 12236 210 25 14 chr4 200704512 200705510 -1622837 - L1PB3 LINE L1 -2574 4296 3311 1913 149 43 25 chr4 200705510 200705878 -1622469 - THE1C LTR MaLR 0 375 1 12236 210 25 14 chr4 200705878 200709427 -1618920 - L1PB3 LINE L1 -3559 3311 547 898 320 115 41 chr4 200709435 200710261 -1618086 - L1M4 LINE L1 -3145 3001 2115 437 143 0 0 chr4 200710471 200710541 -1617806 - Alu SINE Alu -7 305 236 1985 148 3 10 chr4 200710880 200711184 -1617163 + AluSx SINE Alu 1 302 -10 264 349 30 26 chr4 200711186 200711455 -1616892 - HAL1b LINE L1 -807 541 272 365 275 42 33 chr4 200711509 200711629 -1616718 - HAL1b LINE L1 -1167 181 61 291 52 52 17 chr4 200711804 200711862 -1616485 + T-rich Low_complexity Low_complexity 4 63 0 1856 228 69 34 chr4 200712702 200713295 -1615052 + L1MC3 LINE L1 7136 7749 -36 216 0 0 0 chr4 200713314 200713338 -1615009 + (TAA)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr4 200713381 200713407 -1614940 + AT_rich Low_complexity Low_complexity 1 26 0 201 74 0 0 chr4 200714137 200714164 -1614183 + (GA)n Simple_repeat Simple_repeat 2 28 0 2503 191 34 43 chr4 200714250 200714810 -1613537 - MER21A LTR ERV1 -1 930 376 1017 161 31 36 chr4 200714815 200715038 -1613309 - MER21A LTR ERV1 -667 264 43 220 211 19 0 chr4 200715127 200715179 -1613168 + CT-rich Low_complexity Low_complexity 1 53 0 3021 269 26 24 chr4 200715979 200716856 -1611491 + L1PA15 LINE L1 1 879 -5908 3501 216 113 11 chr4 200716919 200718022 -1610325 + L1PA15 LINE L1 1287 2512 -4285 * 4333 217 27 10 chr4 200718019 200719111 -1609236 + L1PA15 LINE L1 4279 5388 -1409 4666 173 50 19 chr4 200719809 200721203 -1607144 + L1PA15 LINE L1 5347 6799 -17 614 249 146 54 chr4 200723737 200724127 -1604220 + L1M4 LINE L1 4611 5036 -1110 648 285 36 0 chr4 200724187 200724408 -1603939 + MER119 DNA MER1_type 40 268 -315 2215 108 7 0 chr4 200724499 200724806 -1603541 - AluSx SINE Alu -3 309 1 337 310 257 6 chr4 200725045 200725216 -1603131 + MIR SINE MIR 39 252 -10 215 346 47 19 chr4 200728956 200729063 -1599284 + L2 LINE L2 3146 3255 -17 22 35 0 0 chr4 200729581 200729610 -1598737 + AT_rich Low_complexity Low_complexity 1 29 0 292 288 99 0 chr4 200731198 200731309 -1597038 + LTR33A LTR ERVL 59 180 -343 186 256 295 0 chr4 200732542 200732620 -1595727 + MIR SINE MIR 46 146 -62 2004 75 4 0 chr4 200733187 200733440 -1594907 + AluY SINE Alu 38 291 -20 218 255 0 58 chr4 200735413 200735601 -1592746 + (CCCTA)n Simple_repeat Simple_repeat 3 179 0 2040 136 7 7 chr4 200735817 200736125 -1592222 + AluSx SINE Alu 1 308 -4 285 260 55 79 chr4 200737953 200738080 -1590267 + MIR SINE MIR 99 222 -40 530 255 21 14 chr4 200739028 200739173 -1589174 - MER5A DNA MER1_type 0 189 44 243 0 0 0 chr4 200739867 200739894 -1588453 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 308 335 25 41 chr4 200739938 200740135 -1588212 - L1ME LINE L1 -5602 468 275 719 248 10 5 chr4 200740171 200740369 -1587978 - L1MA4 LINE L1 -5 6295 6097 437 228 79 0 chr4 200740425 200740526 -1587821 + MER45A DNA AcHobo 66 174 -4 469 250 161 90 chr4 200741322 200741754 -1586593 + L1MEc LINE L1 996 1494 -4902 2068 116 9 44 chr4 200741754 200742072 -1586275 - AluSg SINE Alu 0 310 4 469 250 161 90 chr4 200742072 200742308 -1586039 + L1MEc LINE L1 1494 1712 -4684 2379 105 0 0 chr4 200742863 200743167 -1585180 - AluSc SINE Alu -5 304 1 283 268 14 42 chr4 200744327 200744469 -1583878 + CT-rich Low_complexity Low_complexity 4 141 0 2528 121 3 13 chr4 200744698 200745077 -1583270 - THE1C LTR MaLR 0 375 1 319 355 0 36 chr4 200745699 200745865 -1582482 - MER5B DNA MER1_type -16 162 3 270 252 166 14 chr4 200745997 200746136 -1582211 - MER5A DNA MER1_type -28 161 2 249 163 0 0 chr4 200746453 200746502 -1581845 + (CTTTG)n Simple_repeat Simple_repeat 1 49 0 1102 258 94 14 chr4 200748193 200748628 -1579719 + Charlie4a DNA MER1_type 1 470 -38 683 122 0 11 chr4 200748917 200749162 -1579185 + AluSx SINE Alu 1 311 -1 372 198 35 0 chr4 200750767 200750853 -1577494 - MIR3 SINE MIR -3 205 117 1947 107 75 0 chr4 200750855 200751136 -1577211 + AluSg SINE Alu 1 302 -8 2292 109 0 0 chr4 200752325 200752636 -1575711 - AluSx SINE Alu -1 311 1 233 196 0 39 chr4 200752752 200752803 -1575544 + L1PA12 LINE L1 667 715 -6866 28 29 0 0 chr4 200752975 200753010 -1575337 + AT_rich Low_complexity Low_complexity 1 35 0 243 266 16 0 chr4 200754464 200754528 -1573819 + MIR SINE MIR 82 146 -62 1586 175 7 48 chr4 200755846 200756155 -1572192 + AluJo SINE Alu 1 296 -16 308 208 50 0 chr4 200756531 200756632 -1571715 + (TA)n Simple_repeat Simple_repeat 1 106 0 265 288 50 36 chr4 200756873 200757012 -1571335 - L1ME LINE L1 -376 5745 5605 362 272 106 33 chr4 200757097 200757277 -1571070 + MIR SINE MIR 32 224 -38 254 279 114 63 chr4 200757601 200757855 -1570492 + MLT1I LTR MaLR 98 364 -45 651 218 7 28 chr4 200759067 200759209 -1569138 + MER58A DNA MER1_type 45 183 -41 22 0 0 0 chr4 200759213 200759235 -1569112 + AT_rich Low_complexity Low_complexity 1 22 0 214 398 17 0 chr4 200759514 200759632 -1568715 - L2 LINE L2 -10 3303 3184 2129 113 10 13 chr4 200760057 200760366 -1567981 - AluSx SINE Alu -2 310 3 2200 136 0 0 chr4 200760406 200760715 -1567632 + AluSc SINE Alu 1 309 0 228 301 59 48 chr4 200761301 200761487 -1566860 - L2 LINE L2 -1093 2221 2034 315 330 0 10 chr4 200761916 200762019 -1566328 + MIR SINE MIR 27 128 -80 357 282 108 76 chr4 200763100 200763480 -1564867 - L2 LINE L2 0 3313 2922 3915 127 23 5 chr4 200763568 200764169 -1564178 + LTR9 LTR ERV1 1 612 0 320 321 76 0 chr4 200764197 200764328 -1564019 - MIR3 SINE MIR -55 153 13 1345 217 86 9 chr4 200764417 200764754 -1563593 - MLT1A1 LTR MaLR -1 364 2 1648 185 0 19 chr4 200765581 200765889 -1562458 - AluJo SINE Alu -9 303 2 225 329 157 7 chr4 200766179 200766319 -1562028 + L2 LINE L2 3107 3267 -5 4464 155 46 2 chr4 200766539 200767324 -1561023 + Tigger3(Golem) DNA MER2_type 2211 3029 0 335 171 146 41 chr4 200768711 200768834 -1559513 - MER20B DNA MER1_type -1 782 647 32 26 0 0 chr4 200770021 200770060 -1558287 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr4 200770164 200770185 -1558162 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr4 200770294 200770329 -1558018 + AT_rich Low_complexity Low_complexity 1 35 0 838 222 4 89 chr4 200770357 200770614 -1557733 - MIR SINE MIR -5 257 23 302 0 26 0 chr4 200770642 200770680 -1557667 + (TG)n Simple_repeat Simple_repeat 2 40 0 392 238 224 9 chr4 200771146 200771356 -1556991 - L2 LINE L2 0 3313 3059 1469 245 32 4 chr4 200771869 200772278 -1556069 + MER70A LTR ERVL 1 472 0 441 198 12 0 chr4 200773122 200773208 -1555139 - Tigger5 DNA MER2_type 0 2323 2237 463 132 15 0 chr4 200773261 200773329 -1555018 - Tigger5 DNA MER2_type 0 2323 2255 854 225 65 65 chr4 200773482 200773701 -1554646 - L1ME3A LINE L1 -5 6165 5944 2122 114 10 7 chr4 200773701 200773998 -1554349 - AluSg SINE Alu -12 298 1 854 225 65 65 chr4 200773998 200774085 -1554262 - L1ME3A LINE L1 -225 5945 5859 1263 222 135 15 chr4 200774213 200774613 -1553734 - L1ME3A LINE L1 -284 5886 5438 294 285 120 23 chr4 200774796 200774976 -1553371 - MIR SINE MIR -30 232 35 528 273 123 53 chr4 200775404 200775704 -1552643 - MLT1H LTR MaLR -166 383 63 256 219 47 0 chr4 200777015 200777079 -1551268 + LTR32 LTR ERVL 14 80 -391 898 223 22 11 chr4 200777079 200777263 -1551084 + LTR32 LTR ERVL 285 470 -1 354 303 0 0 chr4 200777272 200777371 -1550976 + HERVL32 LTR ERVL 12 110 -3308 2202 253 20 40 chr4 200777641 200778324 -1550023 + HERVL32 LTR ERVL 52 721 -2697 1107 248 43 48 chr4 200778388 200778763 -1549584 + HERVL32 LTR ERVL 666 1038 -2380 397 238 0 0 chr4 200778774 200778858 -1549489 + HERVL32 LTR ERVL 955 1038 -2380 430 226 0 0 chr4 200778869 200778953 -1549394 + HERVL32 LTR ERVL 955 1038 -2380 658 315 48 34 chr4 200778964 200779316 -1549031 + HERVL32 LTR ERVL 955 1311 -2107 418 175 300 56 chr4 200779425 200779585 -1548762 + HERVL32 LTR ERVL 2351 2549 -869 477 302 78 0 chr4 200779709 200779888 -1548459 + HERVL32 LTR ERVL 3222 3414 -4 319 88 0 88 chr4 200779892 200779949 -1548398 + LTR32 LTR ERVL 13 64 -407 1012 151 21 43 chr4 200779963 200780149 -1548198 + LTR32 LTR ERVL 285 466 -5 198 239 30 0 chr4 200781395 200781462 -1546885 - MER5C DNA MER1_type -42 282 214 185 130 130 0 chr4 200781492 200781538 -1546809 - MER5C DNA MER1_type -202 122 71 839 234 48 0 chr4 200782473 200782682 -1545665 + MER20 DNA MER1_type 1 219 0 600 260 104 10 chr4 200782747 200782939 -1545408 - MER63A DNA MER1_type 0 210 1 234 0 0 0 chr4 200783154 200783180 -1545167 + (CA)n Simple_repeat Simple_repeat 2 27 0 180 0 0 0 chr4 200783530 200783550 -1544797 + (A)n Simple_repeat Simple_repeat 1 20 0 257 304 58 14 chr4 200783769 200783907 -1544440 + L1ME LINE L1 16 159 -5911 1150 236 102 3 chr4 200783927 200784279 -1544068 - MLT1B LTR MaLR 0 390 4 205 325 13 13 chr4 200784456 200784533 -1543814 + C-rich Low_complexity Low_complexity 3 79 0 312 201 22 30 chr4 200784543 200784677 -1543670 + CT-rich Low_complexity Low_complexity 4 136 0 1805 246 75 6 chr4 200785083 200785592 -1542755 + MER74A LTR ERVL 13 556 -2 259 340 41 15 chr4 200785597 200785865 -1542482 + L1ME LINE L1 582 856 -5214 315 318 39 11 chr4 200785871 200786050 -1542297 + MLT1C LTR MaLR 284 467 0 422 316 23 6 chr4 200786444 200786621 -1541726 + L1ME LINE L1 5637 5816 -305 22 0 0 0 chr4 200786668 200786690 -1541657 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr4 200786817 200786859 -1541488 + AT_rich Low_complexity Low_complexity 1 42 0 485 216 0 10 chr4 200788507 200788604 -1539743 + MER20 DNA MER1_type 124 219 0 561 228 89 32 chr4 200789790 200789948 -1538399 - FRAM SINE Alu -17 159 1 234 267 0 35 chr4 200790177 200790263 -1538084 + CT-rich Low_complexity Low_complexity 2 84 0 518 218 0 63 chr4 200790747 200790889 -1537458 - Charlie4 DNA MER1_type -11 1950 1818 27 49 0 0 chr4 200791975 200792016 -1536331 + AT_rich Low_complexity Low_complexity 1 41 0 4377 139 69 98 chr4 200792264 200793694 -1534653 - pTR5 LTR ERV1 0 2438 733 1513 112 49 0 chr4 200793794 200794018 -1534329 - LTR12 LTR ERV1 0 714 480 316 235 31 20 chr4 200794019 200794117 -1534230 - LTR30 LTR ERV1 -80 642 544 4415 127 46 82 chr4 200794121 200795118 -1533229 - pTR5 LTR ERV1 -418 2020 743 186 43 0 0 chr4 200795740 200795763 -1532584 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 2382 160 15 5 chr4 200797777 200798176 -1530171 - MER57A LTR ERV1 0 403 1 191 329 0 41 chr4 200800218 200800291 -1528056 - MER5B DNA MER1_type -78 100 31 992 236 63 73 chr4 200800867 200801265 -1527082 + MSTD LTR MaLR 1 394 -2 247 300 11 0 chr4 200801407 200801497 -1526850 - MLT1G1 LTR MaLR 0 555 465 1713 109 13 0 chr4 200801681 200801920 -1526427 - AluSg SINE Alu -10 300 59 259 257 54 27 chr4 200801921 200801995 -1526352 - MLT1G1 LTR MaLR -313 277 202 453 245 141 31 chr4 200802028 200802191 -1526156 - MLT1G1 LTR MaLR -414 181 1 436 324 104 55 chr4 200802319 200802564 -1525783 - L3 LINE CR1 -662 915 683 1773 47 0 0 chr4 200802564 200802775 -1525572 - L1PA5 LINE L1 0 6154 5944 436 324 104 55 chr4 200802775 200803184 -1525163 - L3 LINE CR1 -894 683 229 27 49 0 0 chr4 200803634 200803675 -1524672 + AT_rich Low_complexity Low_complexity 1 41 0 303 28 0 0 chr4 200805222 200805258 -1523089 + (TG)n Simple_repeat Simple_repeat 2 37 0 2163 118 3 3 chr4 200805474 200805771 -1522576 + AluSc SINE Alu 1 297 -12 988 263 48 46 chr4 200806229 200806621 -1521726 - MER39 LTR ERV1 -10 697 305 2030 134 7 0 chr4 200806630 200806928 -1521419 - AluSx SINE Alu -12 300 1 225 244 0 51 chr4 200806939 200807017 -1521330 - MER34 LTR ERV1 -402 140 67 2007 143 10 0 chr4 200807397 200807827 -1520520 + AluSx SINE Alu 1 433 0 2296 102 0 0 chr4 200809844 200810139 -1518208 + AluSg SINE Alu 1 295 -15 1441 183 54 107 chr4 200810892 200811396 -1516951 + MER31A LTR ERV1 3 479 -6 1791 220 34 96 chr4 200811416 200812029 -1516318 + MER21B LTR ERV1 1 575 -288 296 229 52 55 chr4 200812068 200812219 -1516128 + MER21B LTR ERV1 561 752 -111 2378 216 52 25 chr4 200812735 200813336 -1515011 + L1ME1 LINE L1 5457 6073 -93 1128 232 56 51 chr4 200813356 200813787 -1514560 - MER39 LTR ERV1 -25 682 250 257 200 0 20 chr4 200813761 200813811 -1514536 - MER34 LTR ERV1 -427 115 67 * 3666 153 5 29 chr4 200813921 200814548 -1513799 + LTR9 LTR ERV1 1 612 0 437 220 31 6 chr4 200815247 200815406 -1512941 + GA-rich Low_complexity Low_complexity 3 165 0 360 0 0 0 chr4 200816443 200816483 -1511864 + (TG)n Simple_repeat Simple_repeat 2 41 0 2918 189 24 42 chr4 200816539 200817162 -1511185 - LTR9 LTR ERV1 0 612 1 4021 184 72 23 chr4 200817170 200817993 -1510354 + MER21B LTR ERV1 1 863 0 2397 116 27 19 chr4 200818093 200818465 -1509882 - THE1C LTR MaLR 0 375 1 41 103 0 0 chr4 200818470 200818616 -1509731 + AT_rich Low_complexity Low_complexity 1 146 0 230 204 0 0 chr4 200818616 200818670 -1509677 + L1MC3 LINE L1 6599 6652 -1133 201 196 0 0 chr4 200818675 200818721 -1509626 + (TA)n Simple_repeat Simple_repeat 2 47 0 972 137 14 0 chr4 200819403 200819549 -1508798 + AluSg/x SINE Alu 139 286 -26 229 265 60 17 chr4 200819597 200819714 -1508633 + L1ME LINE L1 5667 5788 -333 182 258 32 0 chr4 200819774 200819836 -1508511 + MIR SINE MIR 68 131 -77 255 276 35 0 chr4 200819893 200819980 -1508367 + MIR SINE MIR 67 156 -106 2435 39 7 0 chr4 200819992 200820313 -1508034 + AluY SINE Alu 1 323 0 332 43 22 0 chr4 200820347 200820393 -1507954 + (CA)n Simple_repeat Simple_repeat 1 47 0 204 213 0 21 chr4 200821399 200821446 -1506901 + C-rich Low_complexity Low_complexity 1 46 0 1975 159 58 0 chr4 200822165 200822492 -1505855 + MER7A DNA MER2_type 3 346 0 22 35 0 0 chr4 200825136 200825165 -1503182 + AT_rich Low_complexity Low_complexity 1 29 0 225 154 0 0 chr4 200825611 200825650 -1502697 + CT-rich Low_complexity Low_complexity 1 39 0 314 271 146 28 chr4 200826002 200826146 -1502201 + MIR SINE MIR 37 197 -65 259 269 21 11 chr4 200827567 200827660 -1500687 + A-rich Low_complexity Low_complexity 5 98 0 560 237 62 50 chr4 200827730 200827927 -1500420 - MLT1J2 LTR MaLR -3 480 266 312 248 64 37 chr4 200827960 200828069 -1500278 - MLT1J2 LTR MaLR -275 175 64 4810 99 5 8 chr4 200828422 200829091 -1499256 + PABL_B LTR ERV1 1 667 0 323 255 20 20 chr4 200829234 200829332 -1499015 + MIR SINE MIR 49 146 -62 217 289 18 72 chr4 200829645 200829811 -1498536 + G-rich Low_complexity Low_complexity 3 159 0 208 326 69 7 chr4 200830632 200830776 -1497571 - L2 LINE L2 -834 2480 2328 234 91 0 0 chr4 200831527 200831560 -1496787 + (A)n Simple_repeat Simple_repeat 1 33 0 1602 193 37 29 chr4 200832639 200833022 -1495325 - MER58D DNA MER1_type 0 386 1 1447 216 21 52 chr4 200833197 200833581 -1494766 + MLT2D LTR ERVL 6 377 -37 273 146 0 0 chr4 200833584 200833632 -1494715 + (CA)n Simple_repeat Simple_repeat 2 49 0 222 365 10 10 chr4 200833824 200833920 -1494427 - L2 LINE L2 -55 3217 3122 3334 153 41 20 chr4 200834603 200835190 -1493157 - LTR9 LTR ERV1 -12 600 2 1522 226 113 7 chr4 200837017 200837432 -1490915 - MER65C LTR ERV1 -2 459 1 642 224 58 44 chr4 200839856 200840061 -1488286 - MER74B LTR ERVL 0 622 415 1266 199 86 119 chr4 200840533 200840988 -1487359 + MLT2B1 LTR ERVL 1 437 -83 2231 112 0 0 chr4 200840988 200841291 -1487056 + AluSc SINE Alu 1 303 -6 1266 199 86 119 chr4 200841291 200841373 -1486974 + MLT2B1 LTR ERVL 437 520 0 219 310 78 23 chr4 200841973 200842102 -1486245 - MIR3 SINE MIR -66 142 7 258 265 0 78 chr4 200842218 200842320 -1486027 - L2 LINE L2 -10 3262 3169 2587 165 26 56 chr4 200842566 200843207 -1485140 - pTR5 LTR ERV1 -1071 1367 746 251 312 56 16 chr4 200844831 200844956 -1483391 - MIR SINE MIR -37 225 96 241 250 147 9 chr4 200845007 200845123 -1483224 + MIR SINE MIR 75 206 -56 1734 206 62 88 chr4 200845401 200845433 -1482914 - MLT2B1 LTR ERVL 0 520 489 306 0 0 0 chr4 200845433 200845467 -1482880 + (TG)n Simple_repeat Simple_repeat 2 35 0 1734 206 62 88 chr4 200845467 200845968 -1482379 - MLT2B1 LTR ERVL -31 489 1 439 291 140 0 chr4 200846426 200846605 -1481742 + L2 LINE L2 1032 1235 -2079 865 222 0 20 chr4 200846605 200846808 -1481539 - MER45R DNA AcHobo 0 1581 1383 2178 269 206 21 chr4 200846863 200848382 -1479965 + L2 LINE L2 1233 3058 -255 380 266 28 9 chr4 200848428 200848537 -1479810 + L2 LINE L2 3203 3313 0 23 86 0 0 chr4 200849969 200850027 -1478320 + AT_rich Low_complexity Low_complexity 1 58 0 415 268 152 31 chr4 200850068 200850489 -1477858 + L1ME4a LINE L1 5592 6063 -58 281 267 105 73 chr4 200850634 200850825 -1477522 - Charlie8 DNA MER1_type -2171 246 50 288 288 25 0 chr4 200851024 200851104 -1477243 + CT-rich Low_complexity Low_complexity 3 84 0 313 257 40 10 chr4 200851215 200851316 -1477031 - Charlie1b DNA MER1_type -1 522 419 201 247 0 13 chr4 200851320 200851397 -1476950 + (TA)n Simple_repeat Simple_repeat 2 77 0 34 89 0 0 chr4 200851419 200851509 -1476838 + AT_rich Low_complexity Low_complexity 1 90 0 2220 104 0 7 chr4 200851511 200851808 -1476539 + AluSx SINE Alu 2 296 -16 1314 226 43 16 chr4 200851822 200852193 -1476154 - Charlie1b DNA MER1_type -138 385 5 318 167 17 0 chr4 200852740 200852800 -1475547 - L1PA16 LINE L1 -9 6157 6097 * 646 186 37 46 chr4 200852771 200852960 -1475387 - L1PA16 LINE L1 -70 6093 5904 291 278 52 21 chr4 200855526 200855623 -1472724 + L2 LINE L2 3168 3267 -5 189 244 93 81 chr4 200855991 200856077 -1472270 + MIR SINE MIR 100 186 -76 1878 173 33 43 chr4 200856088 200856481 -1471866 - MSTC LTR MaLR -3 425 37 3737 124 189 27 chr4 200856647 200857358 -1470989 - LTR12 LTR ERV1 0 826 1 354 246 40 69 chr4 200857387 200857663 -1470684 - pTR5 LTR ERV1 -1376 1062 795 1562 242 78 29 chr4 200857724 200857806 -1470541 + MLT1G LTR MaLR 93 170 -420 851 234 75 107 chr4 200857806 200858366 -1469981 + MER34 LTR ERV1 1 542 0 1562 242 78 29 chr4 200858366 200858756 -1469591 + MLT1G LTR MaLR 170 590 0 387 0 0 0 chr4 200859231 200859274 -1469073 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 243 347 91 16 chr4 200860570 200860691 -1467656 - L2 LINE L2 -4 3268 3139 1120 219 99 70 chr4 200861197 200861573 -1466774 - MLT1C LTR MaLR -6 461 69 207 0 0 0 chr4 200861573 200861596 -1466751 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1120 219 99 70 chr4 200861596 200861662 -1466685 - MLT1C LTR MaLR -398 69 6 2354 75 0 0 chr4 200861739 200862021 -1466326 - AluSg SINE Alu -24 286 5 631 130 35 9 chr4 200862135 200862250 -1466097 + L1MA10 LINE L1 6213 6330 -4 2278 124 0 0 chr4 200862336 200862643 -1465704 + AluSx SINE Alu 1 307 -5 27 62 0 0 chr4 200862832 200862880 -1465467 + AT_rich Low_complexity Low_complexity 1 48 0 1549 223 27 3 chr4 200867056 200867392 -1460955 - MER2 DNA MER2_type 0 344 1 480 291 145 43 chr4 200867586 200867868 -1460479 + LTR16B LTR ERVL 2 312 -152 382 231 108 0 chr4 200867953 200868083 -1460264 - L2 LINE L2 -345 2969 2826 1894 100 130 20 chr4 200869875 200870175 -1458172 + pTR5 LTR ERV1 1693 2025 -413 276 265 31 20 chr4 200870175 200870273 -1458074 + LTR30 LTR ERV1 544 642 -80 1362 116 33 9 chr4 200870277 200870492 -1457855 + pTR5 LTR ERV1 173 392 -2046 374 357 6 13 chr4 200870495 200870652 -1457695 - MIR3 SINE MIR -32 176 21 259 204 39 122 chr4 200871105 200871286 -1457061 - MER34 LTR ERV1 0 542 377 1841 169 145 29 chr4 200871345 200871758 -1456589 + LOR1b LTR ERV1 1 461 0 182 324 14 14 chr4 200871828 200871899 -1456448 - L2 LINE L2 -310 2962 2892 1338 213 33 0 chr4 200871942 200872186 -1456161 + MLT1A1 LTR MaLR 6 257 -108 270 247 86 0 chr4 200872175 200872256 -1456091 + MLT1A1 LTR MaLR 170 257 -108 * 269 240 133 0 chr4 200872248 200872323 -1456024 + MLT1A1 LTR MaLR 173 257 -108 * 694 225 79 6 chr4 200872315 200872493 -1455854 + MLT1A1 LTR MaLR 173 363 -2 6047 104 196 82 chr4 200872591 200874124 -1454223 - pTR5 LTR ERV1 0 2438 744 187 284 27 14 chr4 200874124 200874198 -1454149 + MIR SINE MIR 180 254 -8 234 0 0 0 chr4 200876520 200876546 -1451801 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2348 89 0 7 chr4 200876653 200876956 -1451391 - AluSg SINE Alu -9 301 1 509 285 159 37 chr4 200879697 200880205 -1448142 + HAL1b LINE L1 275 844 -504 998 226 51 57 chr4 200880868 200881164 -1447183 + L1MC4a LINE L1 30 323 -6536 255 287 83 62 chr4 200881242 200881393 -1446954 + L1MC4a LINE L1 5692 5838 -1119 2762 10 0 7 chr4 200881393 200881737 -1446610 + AluYb8 SINE Alu 1 342 0 255 287 83 62 chr4 200881737 200882004 -1446343 + L1MC4a LINE L1 5838 6121 -836 1086 276 169 24 chr4 200882024 200882699 -1445648 + L1MC4a LINE L1 6153 6925 -1694 30 0 0 0 chr4 200884143 200884173 -1444174 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 200884770 200884791 -1443556 + AT_rich Low_complexity Low_complexity 1 21 0 1584 218 11 0 chr4 200886023 200886376 -1441971 - L1P LINE L1 -802 5344 4988 247 333 50 0 chr4 200887093 200887192 -1441155 - MLT1K LTR MaLR -359 229 126 884 141 0 80 chr4 200887458 200887621 -1440726 - U1 snRNA snRNA -15 150 1 318 279 42 104 chr4 200887686 200887973 -1440374 + L1M4b LINE L1 868 1136 -5811 791 259 41 22 chr4 200888021 200888291 -1440056 + L1PB4 LINE L1 5651 5925 -231 * 1874 168 20 17 chr4 200888054 200888399 -1439948 + L1MB1 LINE L1 5691 6036 -132 312 313 0 26 chr4 200888459 200888574 -1439773 + HAL1b LINE L1 465 576 -772 1576 158 70 4 chr4 200888628 200888901 -1439446 + AluSx SINE Alu 1 291 -21 22 56 0 0 chr4 200890514 200890550 -1437797 + AT_rich Low_complexity Low_complexity 1 36 0 1303 225 61 50 chr4 200892306 200892750 -1435597 + L1MD2 LINE L1 5893 6341 -18 318 333 52 15 chr4 200893182 200893317 -1435030 + MIR3 SINE MIR 30 169 -39 328 312 0 28 chr4 200894864 200894973 -1433374 - Tigger3(Golem) DNA MER2_type -1473 1556 1451 1139 256 9 43 chr4 200895072 200895419 -1432928 - Tigger6 DNA MER2_type -1259 338 4 347 320 20 7 chr4 200895419 200895572 -1432775 + L1M4b LINE L1 2717 2871 -4267 746 95 0 0 chr4 200895574 200895669 -1432678 + THE1C LTR MaLR 1 95 -280 203 254 194 0 chr4 200895670 200895737 -1432610 - L2 LINE L2 -17 3296 3217 1862 196 68 34 chr4 200896539 200896983 -1431364 + LTR2B LTR ERV1 32 490 0 186 270 0 0 chr4 200897039 200897102 -1431245 + A-rich Low_complexity Low_complexity 1 63 0 * 372 225 7 14 chr4 200897101 200897243 -1431104 + GA-rich Low_complexity Low_complexity 4 144 0 892 158 35 75 chr4 200899362 200899590 -1428757 + MER20 DNA MER1_type 1 219 0 555 316 51 31 chr4 200899856 200900210 -1428137 + L1M3b LINE L1 3 363 -5918 231 300 157 22 chr4 200900454 200900677 -1427670 + L1M3b LINE L1 332 584 -4766 6431 183 40 18 chr4 200900681 200901722 -1426625 + L1MA7 LINE L1 3932 4949 -1342 2097 127 3 10 chr4 200901722 200902029 -1426318 + AluSx SINE Alu 1 305 -7 6431 183 40 18 chr4 200902029 200903296 -1425051 + L1MA7 LINE L1 4949 6285 -6 1616 183 7 4 chr4 200903311 200903590 -1424757 - AluJo SINE Alu -19 293 14 253 273 99 41 chr4 200904003 200904124 -1424223 + L2 LINE L2 3165 3292 -21 236 204 41 0 chr4 200904334 200904383 -1423964 - MIR SINE MIR -122 140 90 1096 212 42 4 chr4 200907335 200907594 -1420753 + MER33 DNA MER1_type 6 274 -50 1944 209 74 17 chr4 200907604 200908108 -1420239 + L1MB8 LINE L1 5644 6177 -3 21 0 0 0 chr4 200908108 200908129 -1420218 + AT_rich Low_complexity Low_complexity 1 21 0 180 280 0 0 chr4 200908149 200908199 -1420148 - L2 LINE L2 -328 2985 2936 226 301 27 68 chr4 200909612 200909758 -1418589 - MLT1J LTR MaLR -356 155 16 1159 288 91 67 chr4 200909896 200910483 -1417864 + L2 LINE L2 227 844 -2470 1609 166 36 4 chr4 200910483 200910760 -1417587 + AluSx SINE Alu 1 286 -26 1159 288 91 67 chr4 200910760 200911078 -1417269 + L2 LINE L2 844 1153 -2161 216 0 0 0 chr4 200911143 200911167 -1417180 + (A)n Simple_repeat Simple_repeat 1 24 0 621 252 0 19 chr4 200911197 200911352 -1416995 - MER101 LTR ERV1 -93 381 230 1254 313 236 28 chr4 200911609 200913115 -1415232 + L2 LINE L2 1143 2962 -352 24 32 0 0 chr4 200914507 200914538 -1413809 + AT_rich Low_complexity Low_complexity 1 31 0 191 331 87 23 chr4 200914649 200914821 -1413526 - L2 LINE L2 -132 3181 2999 2389 127 22 19 chr4 200914982 200915345 -1413002 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr4 200915359 200915380 -1412967 + AT_rich Low_complexity Low_complexity 1 21 0 225 371 71 29 chr4 200915831 200916041 -1412306 + MIR SINE MIR 20 238 -24 1251 291 63 37 chr4 200916535 200917403 -1410944 + L2 LINE L2 2439 3313 0 946 213 53 5 chr4 200918024 200918231 -1410116 + MER58A DNA MER1_type 4 220 -4 291 130 0 141 chr4 200918880 200919072 -1409275 + (CCCCCA)n Simple_repeat Simple_repeat 6 170 0 950 130 19 0 chr4 200919365 200919519 -1408828 - L1MB4 LINE L1 -2 6178 6022 13864 180 35 20 chr4 200919536 200922344 -1406003 + L1PB1 LINE L1 3 2767 -4100 2154 119 0 0 chr4 200922344 200922638 -1405709 + AluSc SINE Alu 1 294 -15 13864 180 35 20 chr4 200922638 200923179 -1405168 + L1PB1 LINE L1 2767 3298 -3569 2201 118 0 10 chr4 200923179 200923483 -1404864 + AluSq SINE Alu 1 301 -12 13864 180 35 20 chr4 200923483 200926872 -1401475 + L1PB1 LINE L1 3298 6865 -2 3230 187 45 0 chr4 200926886 200927501 -1400846 - L1MB3 LINE L1 -149 6034 5392 3327 187 132 116 chr4 200927687 200928242 -1400105 - L1MD3 LINE L1 -15 7980 7435 631 254 0 0 chr4 200928242 200928376 -1399971 - MLT1F1 LTR MaLR -433 134 1 3327 187 132 116 chr4 200928376 200928511 -1399836 - L1MD3 LINE L1 -560 7435 7304 2602 129 3 3 chr4 200928511 200928875 -1399472 - THE1B LTR MaLR 0 364 1 3327 187 132 116 chr4 200928875 200929236 -1399111 - L1MD3 LINE L1 -691 7304 6776 2345 75 0 47 chr4 200929294 200929612 -1398735 - AluY SINE Alu -8 303 1 226 245 0 0 chr4 200929772 200929821 -1398526 + MIR3 SINE MIR 158 206 -2 854 206 42 47 chr4 200930157 200930187 -1398160 + MER20 DNA MER1_type 2 31 -188 2105 188 8 0 chr4 200930187 200930538 -1397809 + THE1A LTR MaLR 2 355 0 11951 115 8 2 chr4 200930538 200932109 -1396238 + THE1A-int LTR MaLR 1 1580 0 2182 158 17 0 chr4 200932109 200932456 -1395891 + THE1A LTR MaLR 1 353 -2 854 206 42 47 chr4 200932456 200932637 -1395710 + MER20 DNA MER1_type 28 214 -5 295 318 6 62 chr4 200933035 200933207 -1395140 + MIR SINE MIR 30 185 -68 1149 179 5 0 chr4 200933446 200933711 -1394636 + L1MC/D LINE L1 5200 5465 -745 808 171 24 0 chr4 200933716 200933880 -1394467 + L1MC3 LINE L1 6927 7094 -691 320 267 11 0 chr4 200933883 200933973 -1394374 + MLT1F1 LTR MaLR 35 125 -442 2309 224 18 26 chr4 200933980 200934547 -1393800 + L1MC3 LINE L1 7223 7784 -1 216 0 0 0 chr4 200935305 200935329 -1393018 + (A)n Simple_repeat Simple_repeat 1 24 0 1715 168 21 0 chr4 200935643 200935923 -1392424 + AluJb SINE Alu 1 286 -26 261 98 0 0 chr4 200935928 200935969 -1392378 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 2172 95 33 26 chr4 200942200 200942504 -1385843 - AluSc SINE Alu -3 306 1 185 325 65 0 chr4 200942877 200942954 -1385393 + MIR3 SINE MIR 124 205 -3 24 0 0 0 chr4 200944081 200944105 -1384242 + AT_rich Low_complexity Low_complexity 1 24 0 193 336 88 44 chr4 200944646 200944783 -1383564 - MIR3 SINE MIR -52 156 14 514 310 122 4 chr4 200945180 200945409 -1382938 - MIR SINE MIR 0 262 7 399 287 108 45 chr4 200945453 200945676 -1382671 + MIR SINE MIR 6 242 -20 1772 194 28 18 chr4 200946732 200947124 -1381223 + MLT2D LTR ERVL 12 407 -7 242 187 96 153 chr4 200947116 200947325 -1381022 - MLT1H LTR MaLR -32 517 321 * 1246 193 33 16 chr4 200947338 200947644 -1380703 + Charlie1 DNA MER1_type 2451 2761 0 359 384 34 23 chr4 200947816 200948082 -1380265 - L2 LINE L2 -493 2821 2553 353 283 108 33 chr4 200948200 200948440 -1379907 + L1P5 LINE L1 5327 5584 -572 234 345 159 28 chr4 200948486 200948631 -1379716 + L2 LINE L2 3123 3286 -27 491 320 39 12 chr4 200948748 200949004 -1379343 + L1ME4a LINE L1 5649 5911 -210 341 182 159 0 chr4 200949034 200949122 -1379225 + L1ME4a LINE L1 5986 6087 -34 1393 166 119 32 chr4 200950823 200951100 -1377247 - AluJo SINE Alu -1 301 1 338 191 16 0 chr4 200951772 200951835 -1376512 + LTR67 LTR ERVL 494 557 0 24 0 0 0 chr4 200952307 200952331 -1376016 + AT_rich Low_complexity Low_complexity 1 24 0 329 260 24 32 chr4 200952445 200952568 -1375779 + MIR SINE MIR 70 191 -71 881 147 0 35 chr4 200953297 200953440 -1374907 - AluJb SINE Alu -17 295 158 2190 116 0 0 chr4 200954333 200954626 -1373721 - AluSg SINE Alu -17 293 1 802 128 8 8 chr4 200954863 200954988 -1373359 + FRAM SINE Alu 31 155 -21 596 219 37 42 chr4 200955175 200955390 -1372957 - Charlie1 DNA MER1_type 0 2761 2548 1395 51 46 0 chr4 200955393 200955568 -1372779 - AluSp SINE Alu -15 298 116 1909 141 10 3 chr4 200956382 200956673 -1371674 - AluSq SINE Alu -20 293 1 903 114 32 0 chr4 200956710 200956833 -1371514 + FLAM_C SINE Alu 1 127 -6 440 290 126 31 chr4 200959464 200959719 -1368628 + HAL1 LINE L1 49 327 -2180 1624 246 50 102 chr4 200959844 200960618 -1367729 + HAL1 LINE L1 530 1263 -1244 1774 261 95 34 chr4 200960846 200961636 -1366711 + HAL1 LINE L1 1670 2507 0 241 226 32 16 chr4 200961656 200961718 -1366629 + GA-rich Low_complexity Low_complexity 3 65 0 228 186 51 34 chr4 200963407 200963466 -1364881 - MLT2E LTR ERVL -536 92 33 331 258 167 0 chr4 200963735 200963855 -1364492 - MIR SINE MIR -118 144 5 641 182 4 0 chr4 200965146 200965394 -1362953 + (CA)n Simple_repeat Simple_repeat 1 249 0 216 0 0 0 chr4 200966015 200966039 -1362308 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1327 184 17 97 chr4 200966039 200966649 -1361698 - MER4C LTR ERV1 -10 455 1 241 233 14 41 chr4 200966729 200966802 -1361545 + GA-rich Low_complexity Low_complexity 2 72 0 274 331 142 31 chr4 200967071 200967431 -1360916 - L2 LINE L2 -641 2673 2274 229 238 71 24 chr4 200967573 200967657 -1360690 - MIR SINE MIR -99 163 76 1419 203 13 10 chr4 200969424 200969725 -1358622 - AluJb SINE Alu -6 306 5 27 49 0 0 chr4 200969749 200969790 -1358557 + AT_rich Low_complexity Low_complexity 1 41 0 189 0 0 0 chr4 200969881 200969902 -1358445 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 2104 112 7 0 chr4 200972305 200972591 -1355756 + AluSx SINE Alu 1 288 -24 211 244 47 23 chr4 200972612 200972698 -1355649 + MIR SINE MIR 4 91 -171 9797 27 4 0 chr4 200974891 200976037 -1352310 - L1PA4 LINE L1 -1144 5002 3852 7873 20 1 1 chr4 200976037 200977182 -1351165 + L1PA4 LINE L1 5008 6152 -3 29 47 0 0 chr4 200977182 200977225 -1351122 + AT_rich Low_complexity Low_complexity 1 43 0 253 236 178 18 chr4 200977513 200977633 -1350714 - MLT1I LTR MaLR -52 391 245 2264 61 17 3 chr4 200977674 200977971 -1350376 + AluY SINE Alu 2 302 -9 1432 275 105 32 chr4 200979144 200979679 -1348668 + MLT1G LTR MaLR 17 590 0 917 203 77 26 chr4 200979700 200980035 -1348312 - MLT1C LTR MaLR 0 467 9 224 238 0 48 chr4 200980142 200980205 -1348142 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 2413 205 78 0 chr4 200981813 200982329 -1346018 - MER74A LTR ERVL 0 558 3 1022 245 62 88 chr4 200983410 200983990 -1344357 + L1MCc LINE L1 820 1384 -5039 1783 94 0 9 chr4 200983993 200984226 -1344121 + AluSx SINE Alu 1 231 -81 1613 145 288 143 chr4 200984226 200984958 -1343389 - pTR5 LTR ERV1 -3 2435 1352 400 204 9 87 chr4 200985055 200985286 -1343061 - pTR5 LTR ERV1 -1410 1028 816 399 167 29 37 chr4 200985287 200985411 -1342936 + Alu SINE Alu 238 298 -4 832 313 51 23 chr4 200985420 200985934 -1342413 + L1MCc LINE L1 1389 1916 -5025 743 118 7 0 chr4 200985934 200986069 -1342278 + (CA)n Simple_repeat Simple_repeat 1 136 0 511 206 0 0 chr4 200986255 200986347 -1342000 + LTR40b LTR ERVL 367 458 -4 870 253 53 8 chr4 200986373 200986651 -1341696 + L1MCc LINE L1 2078 2518 -4588 520 269 21 52 chr4 200987221 200987414 -1340933 + MLT1J2 LTR MaLR 20 206 -244 22 80 0 0 chr4 200987700 200987750 -1340597 + AT_rich Low_complexity Low_complexity 1 50 0 26 0 0 0 chr4 200988302 200988328 -1340019 + AT_rich Low_complexity Low_complexity 1 26 0 457 223 191 21 chr4 200989227 200989415 -1338932 + MIR SINE MIR 2 221 -41 537 279 38 6 chr4 200989979 200990137 -1338210 - MER63A DNA MER1_type 0 210 48 1341 183 0 9 chr4 200990601 200990831 -1337516 + MER30 DNA MER1_type 3 230 0 311 234 65 26 chr4 200991379 200991533 -1336814 + L1MC4 LINE L1 6930 7089 -953 338 207 35 11 chr4 200991536 200991623 -1336724 + L1MC4 LINE L1 7242 7330 -712 1031 225 6 92 chr4 200991729 200992044 -1336303 + L1MC4 LINE L1 7333 7620 -422 365 130 130 29 chr4 200992060 200992129 -1336218 - THE1C LTR MaLR -299 76 1 548 274 38 21 chr4 200992129 200992375 -1335972 + L1MC4 LINE L1 7553 7713 -95 204 143 0 0 chr4 200993988 200994023 -1334324 + L2 LINE L2 3269 3303 -10 186 43 0 0 chr4 200994897 200994920 -1333427 + (T)n Simple_repeat Simple_repeat 1 23 0 246 350 86 0 chr4 200995858 200995975 -1332372 + L3 LINE CR1 1447 1573 -4 904 252 57 55 chr4 200996252 200996392 -1331955 + L1ME4a LINE L1 5594 5732 -389 2246 109 0 20 chr4 200996392 200996695 -1331652 - AluSq SINE Alu -16 297 1 904 252 57 55 chr4 200996695 200996935 -1331412 + L1ME4a LINE L1 5732 5978 -143 438 53 0 0 chr4 200996935 200996992 -1331355 + (CA)n Simple_repeat Simple_repeat 2 58 0 904 252 57 55 chr4 200996992 200997134 -1331213 + L1ME4a LINE L1 5978 6118 -3 55 40 0 0 chr4 200997314 200997390 -1330957 + AT_rich Low_complexity Low_complexity 1 76 0 261 0 0 0 chr4 200997408 200997437 -1330910 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1920 127 4 0 chr4 200997437 200997704 -1330643 - AluJb SINE Alu -32 280 13 23 0 0 0 chr4 200998963 200998986 -1329361 + AT_rich Low_complexity Low_complexity 1 23 0 1207 151 0 10 chr4 201001088 201001287 -1327060 + L1MA4A LINE L1 6102 6298 -5 244 265 15 0 chr4 201001332 201001400 -1326947 + (TA)n Simple_repeat Simple_repeat 1 69 0 2372 105 0 6 chr4 201003140 201003453 -1324894 + AluSq SINE Alu 1 311 -2 206 234 83 28 chr4 201006797 201006942 -1321405 + (CCTG)n Simple_repeat Simple_repeat 2 154 0 569 264 100 43 chr4 201007223 201007522 -1320825 + L1MC4 LINE L1 6925 7240 -802 346 235 189 0 chr4 201007556 201007688 -1320659 + L1MC4 LINE L1 7364 7520 -522 402 228 120 133 chr4 201007844 201008384 -1319963 + L1MC4 LINE L1 7509 8041 -1 21 0 0 0 chr4 201008488 201008509 -1319838 + AT_rich Low_complexity Low_complexity 1 21 0 599 310 112 36 chr4 201009886 201010325 -1318022 - MLT1G1 LTR MaLR -123 472 1 281 116 52 58 chr4 201013578 201013750 -1314597 + (CCA)n Simple_repeat Simple_repeat 3 173 0 208 120 60 60 chr4 201013727 201013894 -1314453 + (CACCAT)n Simple_repeat Simple_repeat 1 167 0 * 188 119 52 67 chr4 201013943 201014077 -1314270 + (CCA)n Simple_repeat Simple_repeat 3 134 0 210 158 35 35 chr4 201014091 201014148 -1314199 + (CCA)n Simple_repeat Simple_repeat 3 59 0 194 115 62 54 chr4 201014162 201014292 -1314055 + (CACCAT)n Simple_repeat Simple_repeat 1 131 0 248 198 33 44 chr4 201014307 201014398 -1313949 + (CCA)n Simple_repeat Simple_repeat 3 92 0 188 119 52 67 chr4 201014412 201014546 -1313801 + (CCA)n Simple_repeat Simple_repeat 3 134 0 214 104 49 79 chr4 201014594 201014758 -1313589 + (CCA)n Simple_repeat Simple_repeat 3 161 0 409 128 31 123 chr4 201014803 201014998 -1313349 + (CCA)n Simple_repeat Simple_repeat 3 179 0 241 102 48 78 chr4 201015046 201015213 -1313134 + (CCA)n Simple_repeat Simple_repeat 3 164 0 454 202 27 55 chr4 201015258 201015441 -1312906 + (CCA)n Simple_repeat Simple_repeat 2 179 0 562 238 38 27 chr4 201016090 201016275 -1312072 + MER53 DNA DNA 1 187 -2 519 336 31 18 chr4 201016574 201016800 -1311547 + MIR SINE MIR 14 242 -20 472 242 7 98 chr4 201018313 201018466 -1309881 + LTR8A LTR ERV1 1 139 -588 2949 195 11 56 chr4 201018468 201019134 -1309213 + LTR8 LTR ERV1 56 691 0 306 209 15 15 chr4 201020332 201020399 -1307948 - MER21B LTR ERV1 -671 192 126 1953 124 43 0 chr4 201020871 201021153 -1307194 - AluSq SINE Alu -19 294 1 246 150 0 0 chr4 201021731 201021771 -1306576 - Alu SINE Alu -11 291 252 181 229 114 57 chr4 201021834 201021904 -1306443 - MIR SINE MIR -107 101 28 629 277 132 0 chr4 201022031 201022251 -1306096 + MIR SINE MIR 13 261 -1 728 286 11 0 chr4 201022263 201022438 -1305909 - MER45A DNA AcHobo -1 177 1 2326 82 0 0 chr4 201022603 201022897 -1305450 + AluSx SINE Alu 1 294 -18 235 273 0 53 chr4 201024370 201024557 -1303790 + CT-rich Low_complexity Low_complexity 1 177 0 267 250 0 60 chr4 201024598 201024782 -1303565 + CT-rich Low_complexity Low_complexity 6 178 0 1020 190 66 88 chr4 201027448 201027753 -1300594 + L1ME2 LINE L1 5867 6164 0 342 305 54 74 chr4 201028526 201028729 -1299618 + MIR3 SINE MIR 5 203 -5 3061 184 29 20 chr4 201028861 201029835 -1298512 - L1MA7 LINE L1 -436 6059 5072 343 281 140 54 chr4 201029882 201030103 -1298244 - L1MC5 LINE L1 -523 7438 7199 308 275 92 9 chr4 201030103 201030212 -1298135 + MER58A DNA MER1_type 1 118 0 1439 189 13 58 chr4 201030213 201030595 -1297752 - L1MA7 LINE L1 -1284 5066 4702 * 3624 249 47 51 chr4 201030569 201030628 -1297719 - L1MA7 LINE L1 -3843 2507 2449 498 119 0 0 chr4 201030628 201030695 -1297652 - L1PA5 LINE L1 -11 6143 6077 3624 249 47 51 chr4 201030695 201032937 -1295410 - L1MA7 LINE L1 -3901 2449 603 1850 172 0 0 chr4 201032970 201033255 -1295092 + AluJo SINE Alu 1 285 -27 2620 234 34 43 chr4 201033277 201033982 -1294365 - L1MA7 LINE L1 -5582 699 1 473 299 171 37 chr4 201034986 201035367 -1292980 - L2 LINE L2 -1 3312 2881 1763 242 33 20 chr4 201035577 201036035 -1292312 - MLT1C LTR MaLR -3 464 1 3480 123 67 26 chr4 201036073 201036705 -1291642 + MER51C LTR ERV1 2 640 0 38 22 0 0 chr4 201036845 201036890 -1291457 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr4 201036906 201036927 -1291420 + AT_rich Low_complexity Low_complexity 1 21 0 772 286 85 86 chr4 201036942 201037958 -1290389 + L1MEd LINE L1 135 1149 -4970 840 151 0 27 chr4 201037959 201038105 -1290242 + FLAM_C SINE Alu 1 142 -1 289 319 75 21 chr4 201038145 201038477 -1289870 + L1MEd LINE L1 1284 1633 -4677 2743 29 0 0 chr4 201038477 201038788 -1289559 + AluY SINE Alu 1 311 0 483 209 7 20 chr4 201039125 201039273 -1289074 + GA-rich Low_complexity Low_complexity 3 148 0 272 266 92 18 chr4 201039578 201039687 -1288660 - MIR SINE MIR -110 152 36 251 229 24 60 chr4 201040606 201040689 -1287658 + HAL1b LINE L1 1207 1286 -62 2050 89 17 14 chr4 201040691 201040983 -1287364 - AluY SINE Alu -14 297 5 285 252 143 17 chr4 201041012 201041131 -1287216 - L1ME4a LINE L1 -16 6105 5972 216 359 31 25 chr4 201041198 201041357 -1286990 - L2 LINE L2 -665 2649 2490 353 291 26 8 chr4 201042812 201042929 -1285418 - L2 LINE L2 0 3313 3195 1177 219 76 60 chr4 201045525 201045955 -1282392 - MER39 LTR ERV1 0 707 67 2190 104 0 10 chr4 201046346 201046645 -1281702 + AluSx SINE Alu 1 296 -16 208 328 75 0 chr4 201047089 201047156 -1281191 + L2 LINE L2 3163 3234 -38 231 299 75 0 chr4 201047161 201047228 -1281119 + L2 LINE L2 3163 3234 -38 209 292 108 0 chr4 201047233 201047298 -1281049 + L2 LINE L2 3163 3234 -38 214 277 108 0 chr4 201047303 201047368 -1280979 + L2 LINE L2 3163 3234 -38 1938 134 7 0 chr4 201048009 201048284 -1280063 - AluSx SINE Alu -14 298 22 1287 194 0 0 chr4 201048291 201048507 -1279840 - MER21A-int LTR ERV1 -2689 4069 3854 4886 188 12 2 chr4 201048550 201049411 -1278936 - MER21A-int LTR ERV1 -3317 874 6 2690 179 38 22 chr4 201049420 201049922 -1278425 - MER21A LTR ERV1 -6 925 416 13705 140 32 23 chr4 201049922 201051898 -1276449 + Tigger1 DNA MER2_type 103 2106 -312 2096 135 0 3 chr4 201051898 201052202 -1276145 + AluSx SINE Alu 1 303 -9 13705 140 32 23 chr4 201052202 201052519 -1275828 + Tigger1 DNA MER2_type 2106 2418 0 1769 270 140 38 chr4 201052639 201053197 -1275150 - L2 LINE L2 -2 3311 2811 1871 96 4 0 chr4 201053197 201053437 -1274910 + AluSx SINE Alu 58 298 -14 1769 270 140 38 chr4 201053437 201053986 -1274361 - L2 LINE L2 -502 2811 2108 296 360 20 13 chr4 201054719 201054869 -1273478 - L2 LINE L2 -473 2841 2691 8096 28 1 0 chr4 201055409 201057040 -1271307 + L1PA4 LINE L1 4523 6155 0 180 125 0 0 chr4 201057172 201057204 -1271143 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 240 59 0 0 chr4 201058058 201058092 -1270255 + (CA)n Simple_repeat Simple_repeat 2 35 0 254 298 117 29 chr4 201058506 201058677 -1269670 - MARNA DNA Mariner -104 482 297 392 305 113 23 chr4 201059750 201059927 -1268420 - MIR SINE MIR -47 215 23 314 320 98 16 chr4 201059967 201060089 -1268258 - MARNA DNA Mariner -366 220 89 363 44 0 0 chr4 201061390 201061435 -1266912 + (CA)n Simple_repeat Simple_repeat 2 46 0 24 32 0 0 chr4 201062127 201062158 -1266189 + AT_rich Low_complexity Low_complexity 1 31 0 750 207 0 29 chr4 201063149 201063289 -1265058 + FLAM_C SINE Alu 2 137 -6 630 282 22 50 chr4 201063490 201063767 -1264580 - L2 LINE L2 0 3313 3045 1093 186 83 30 chr4 201063806 201064070 -1264277 + MLT1D LTR MaLR 70 347 -158 371 258 82 72 chr4 201064137 201064331 -1264016 - L2 LINE L2 -264 3049 2854 338 215 140 11 chr4 201064458 201064551 -1263796 + MER63 DNA MER1_type 2 732 -104 580 136 0 0 chr4 201065127 201065215 -1263132 + Ricksha DNA DNA 7 94 -1160 683 176 0 61 chr4 201065220 201065238 -1263109 - FLAM_C SINE Alu -187 125 107 2183 144 53 14 chr4 201065238 201065599 -1262748 - THE1C LTR MaLR 0 375 1 9830 130 45 5 chr4 201065599 201067119 -1261228 - THE1C-int LTR MaLR 0 1580 1 2791 74 13 19 chr4 201067119 201067496 -1260851 - THE1C LTR MaLR 0 375 1 683 176 0 61 chr4 201067496 201067606 -1260741 - FLAM_C SINE Alu -202 110 3 1770 158 6 2 chr4 201067607 201067934 -1260413 + Ricksha DNA DNA 95 501 -2745 11603 149 24 32 chr4 201067936 201069828 -1258519 + Ricksha DNA DNA 1189 3064 -182 2107 132 0 0 chr4 201069828 201070123 -1258224 - AluY SINE Alu -16 295 1 11603 149 24 32 chr4 201070123 201070305 -1258042 + Ricksha DNA DNA 3064 3246 0 2040 172 65 8 chr4 201071208 201071623 -1256724 - L1MB4 LINE L1 -63 6117 5689 1045 200 5 10 chr4 201071627 201071822 -1256525 + 7SLRNA srpRNA srpRNA 1 194 -126 24 32 0 0 chr4 201071930 201071961 -1256386 + GC_rich Low_complexity Low_complexity 1 31 0 455 173 12 0 chr4 201071973 201072054 -1256293 + 7SLRNA srpRNA srpRNA 230 311 -9 1069 138 12 188 chr4 201072065 201072319 -1256028 - L1MB4 LINE L1 -483 5700 5403 1779 161 3 10 chr4 201072319 201072495 -1255852 - AluSx SINE Alu -15 297 122 189 0 0 0 chr4 201072495 201072516 -1255831 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1779 161 3 10 chr4 201072516 201072638 -1255709 - AluSx SINE Alu -190 122 1 1069 138 12 188 chr4 201072638 201072692 -1255655 - L1MB4 LINE L1 -780 5403 5454 342 0 0 0 chr4 201072692 201072730 -1255617 + (TG)n Simple_repeat Simple_repeat 2 39 0 1069 138 12 188 chr4 201072730 201072761 -1255586 - L1MB4 LINE L1 -728 5455 5420 325 65 22 0 chr4 201073623 201073669 -1254678 - MADE1 DNA Mariner 0 80 34 348 266 258 0 chr4 201074132 201074260 -1254087 - MER5A DNA MER1_type -11 178 18 201 366 69 0 chr4 201074436 201074537 -1253810 - L2 LINE L2 -19 3294 3187 450 305 114 72 chr4 201074548 201075115 -1253232 - L2 LINE L2 -555 2759 2160 1515 114 46 0 chr4 201075115 201075334 -1253013 + MER30 DNA MER1_type 1 229 -1 450 305 114 72 chr4 201075334 201075416 -1252931 - L2 LINE L2 -1154 2160 2083 445 237 76 8 chr4 201075492 201075610 -1252737 + L1PB4 LINE L1 6028 6153 -3 731 159 17 17 chr4 201075621 201075797 -1252550 + GA-rich Low_complexity Low_complexity 2 177 0 315 65 22 0 chr4 201075801 201075847 -1252500 + (GGAAA)n Simple_repeat Simple_repeat 5 51 0 300 53 0 0 chr4 201075847 201075885 -1252462 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 972 75 29 23 chr4 201075905 201076079 -1252268 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 1259 205 124 3 chr4 201076123 201076454 -1251893 + MLT1B LTR MaLR 10 380 -10 289 344 58 40 chr4 201076462 201076791 -1251556 - L2 LINE L2 -1415 1899 1565 188 263 51 109 chr4 201078953 201079090 -1249257 + MIR SINE MIR 123 251 -11 249 288 78 20 chr4 201080306 201080459 -1247888 + MIR SINE MIR 1 173 -89 1174 229 100 31 chr4 201080836 201081186 -1247161 + MLT1A2 LTR MaLR 1 374 0 31 0 0 0 chr4 201082250 201082281 -1246066 + AT_rich Low_complexity Low_complexity 1 31 0 1507 166 8 11 chr4 201082579 201082844 -1245503 + AluJb SINE Alu 26 289 -23 950 196 63 49 chr4 201082912 201083197 -1245150 + AluJo SINE Alu 7 295 -17 1448 181 105 1 chr4 201083558 201084014 -1244333 + Charlie1b DNA MER1_type 22 518 -5 10945 191 53 65 chr4 201084197 201084872 -1243475 - L1MA9 LINE L1 -6 6542 5860 1720 157 52 7 chr4 201084872 201085158 -1243189 - AluJo SINE Alu -13 299 1 10945 191 53 65 chr4 201085158 201086447 -1241900 - L1MA9 LINE L1 -688 5860 4557 308 271 0 0 chr4 201086447 201086506 -1241841 - MER2 DNA MER2_type -1 344 286 384 172 16 0 chr4 201086513 201086577 -1241770 + MER2 DNA MER2_type 281 345 0 343 247 32 11 chr4 201086577 201086670 -1241677 - MER2 DNA MER2_type -250 95 1 10945 191 53 65 chr4 201086670 201088889 -1239458 - L1MA9 LINE L1 -1995 4553 2187 258 308 70 35 chr4 201089340 201089483 -1238864 + MLT1K LTR MaLR 11 158 -430 547 296 19 13 chr4 201089495 201089654 -1238693 + MER91A DNA MER1_type 23 182 -14 695 303 87 51 chr4 201089669 201090062 -1238285 + MLT1K LTR MaLR 147 553 -35 224 238 0 48 chr4 201090668 201090731 -1237616 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 919 206 75 23 chr4 201090838 201091173 -1237174 + MLT1C LTR MaLR 9 467 0 1432 275 105 32 chr4 201091194 201091729 -1236618 - MLT1G LTR MaLR 0 590 17 2323 60 17 3 chr4 201092902 201093201 -1235146 - AluY SINE Alu -8 303 1 262 321 72 21 chr4 201093201 201093534 -1234813 - L1MEc LINE L1 -4677 1633 1284 844 151 0 27 chr4 201093574 201093720 -1234627 - FLAM_C SINE Alu -1 142 1 696 289 82 86 chr4 201093721 201094740 -1233607 - L1MEc LINE L1 -4970 1149 135 38 15 5 0 chr4 201094755 201094837 -1233510 + AT_rich Low_complexity Low_complexity 1 45 0 782 104 0 9 chr4 201094977 201095092 -1233255 - MER51C LTR ERV1 0 640 527 705 210 4 84 chr4 201095196 201095434 -1232913 + L1MA7 LINE L1 4644 4862 -1284 305 275 92 9 chr4 201095435 201095544 -1232803 - MER58A DNA MER1_type 0 118 1 337 281 140 54 chr4 201095544 201095765 -1232582 + L1MC5 LINE L1 7199 7438 -523 3028 184 29 20 chr4 201095812 201096786 -1231561 + L1MA7 LINE L1 4868 5855 -436 290 347 66 30 chr4 201096918 201097085 -1231262 - MIR3 SINE MIR -5 203 31 1007 190 66 88 chr4 201097894 201098199 -1230148 - L1ME2 LINE L1 0 6164 5867 200 268 0 60 chr4 201101202 201101385 -1226962 + GA-rich Low_complexity Low_complexity 1 172 0 268 275 0 50 chr4 201101425 201101607 -1226740 + GA-rich Low_complexity Low_complexity 6 178 0 293 269 0 48 chr4 201101808 201101994 -1226353 + GA-rich Low_complexity Low_complexity 1 177 0 273 256 0 56 chr4 201102069 201102249 -1226098 + GA-rich Low_complexity Low_complexity 2 171 0 263 264 0 52 chr4 201102355 201102529 -1225818 + GA-rich Low_complexity Low_complexity 2 166 0 251 268 0 54 chr4 201102602 201102980 -1225367 + GA-rich Low_complexity Low_complexity 1 357 0 230 294 0 43 chr4 201103065 201103249 -1225098 + GA-rich Low_complexity Low_complexity 5 180 0 2304 88 0 0 chr4 201104543 201104837 -1223510 - AluSx SINE Alu -18 294 1 677 286 11 0 chr4 201105002 201105177 -1223170 + MER45A DNA AcHobo 1 177 -1 566 282 132 0 chr4 201105189 201105409 -1222938 - MIR SINE MIR -1 261 13 247 150 0 0 chr4 201105669 201105709 -1222638 + Alu SINE Alu 252 291 -11 1940 128 43 0 chr4 201106287 201106568 -1221779 + AluSq SINE Alu 1 293 -20 314 209 15 15 chr4 201107040 201107107 -1221240 + MER21B LTR ERV1 126 192 -671 2965 195 11 56 chr4 201108305 201108971 -1219376 - LTR8 LTR ERV1 0 691 56 488 235 7 98 chr4 201108973 201109126 -1219221 - LTR8A LTR ERV1 -588 139 1 468 305 39 7 chr4 201110711 201110865 -1217482 - MIR SINE MIR -90 172 14 8924 116 29 13 chr4 201310926 201312338 -1016009 - L1PBa LINE L1 -4463 2400 966 719 183 88 0 chr4 201312332 201312469 -1015878 - L1PBa LINE L1 -6712 151 3 * 867 143 19 0 chr4 201312486 201312640 -1015707 + L1MB4 LINE L1 6022 6178 -2 284 136 0 136 chr4 201312972 201313178 -1015169 + (TGGGGG)n Simple_repeat Simple_repeat 3 180 0 827 202 62 24 chr4 201313620 201313828 -1014519 - MER58A DNA MER1_type -4 220 5 959 293 69 41 chr4 201314450 201315312 -1013035 - L2 LINE L2 0 3313 2444 8120 13 0 0 chr4 201315421 201316643 -1011704 - L1HS LINE L1 -4 6151 4930 4610 23 0 0 chr4 201316639 201317167 -1011180 + L1HS LINE L1 4414 4941 -1205 * 222 352 71 29 chr4 201317575 201317785 -1010562 - MIR SINE MIR -24 238 20 828 213 102 0 chr4 201318000 201318237 -1010110 - L1MC/D LINE L1 -547 5636 5392 3400 179 140 120 chr4 201318423 201318978 -1009369 - L1MD3 LINE L1 -15 7980 7437 593 261 0 0 chr4 201318978 201319112 -1009235 - MLT1F1 LTR MaLR -433 134 1 3400 179 140 120 chr4 201319112 201319247 -1009100 - L1MD3 LINE L1 -558 7437 7306 2450 132 3 3 chr4 201319247 201319611 -1008736 - THE1B LTR MaLR 0 364 1 3400 179 140 120 chr4 201319611 201319968 -1008379 - L1MD3 LINE L1 -689 7306 6776 2303 95 0 32 chr4 201320022 201320338 -1008009 - AluY SINE Alu -5 306 1 211 245 0 0 chr4 201320498 201320547 -1007800 + MIR3 SINE MIR 158 206 -2 900 192 42 47 chr4 201320950 201320980 -1007367 + MER20 DNA MER1_type 2 31 -188 1956 191 8 0 chr4 201320980 201321331 -1007016 + THE1A LTR MaLR 2 355 0 11419 110 8 4 chr4 201321331 201322905 -1005442 + THE1A-int LTR MaLR 1 1580 0 1916 166 26 0 chr4 201322905 201323249 -1005098 + THE1A LTR MaLR 1 353 -2 900 192 42 47 chr4 201323249 201323430 -1004917 + MER20 DNA MER1_type 28 214 -5 215 334 2 63 chr4 201323828 201324000 -1004347 + MIR SINE MIR 30 185 -68 1160 183 5 0 chr4 201324243 201324514 -1003833 + L1MC4a LINE L1 5200 5471 -745 735 189 24 0 chr4 201324520 201324684 -1003663 + L1MC3 LINE L1 6927 7094 -691 310 278 11 0 chr4 201324687 201324777 -1003570 + MLT1F1 LTR MaLR 35 125 -442 2245 222 25 25 chr4 201324784 201325346 -1003001 + L1MC3 LINE L1 7223 7784 -1 1728 168 21 0 chr4 201326395 201326675 -1001672 + AluJo SINE Alu 1 286 -26 234 105 0 0 chr4 201326683 201326721 -1001626 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2101 129 3 13 chr4 201328139 201328441 -999906 - AluSc SINE Alu -10 299 1 2199 101 7 0 chr4 201329885 201330171 -998176 - AluSp SINE Alu -25 288 1 1932 138 0 7 chr4 201330255 201330538 -997809 - AluY SINE Alu -30 281 1 273 256 39 26 chr4 201330540 201330618 -997729 + L1MC4a LINE L1 5857 5935 -1873 182 194 0 0 chr4 201330877 201330908 -997439 - MER5B DNA MER1_type -130 48 18 218 308 98 8 chr4 201330967 201331100 -997247 + MIR3 SINE MIR 41 185 -23 29 0 0 0 chr4 201331240 201331269 -997078 + AT_rich Low_complexity Low_complexity 1 29 0 1955 114 48 3 chr4 201331295 201331585 -996762 - AluSg SINE Alu -7 303 1 981 199 6 0 chr4 201331604 201331770 -996577 - AluJb SINE Alu -12 300 134 1141 95 6 6 chr4 201331874 201332032 -996315 - AluY SINE Alu -153 158 1 21 0 0 0 chr4 201332039 201332060 -996287 + AT_rich Low_complexity Low_complexity 1 21 0 566 248 8 0 chr4 201332060 201332185 -996162 - AluJ SINE Alu -176 126 1 26 101 0 0 chr4 201332396 201332485 -995862 + AT_rich Low_complexity Low_complexity 1 89 0 22 56 0 0 chr4 201332585 201332621 -995726 + AT_rich Low_complexity Low_complexity 1 36 0 2162 135 3 0 chr4 201333081 201333392 -994955 - AluSx SINE Alu 0 312 1 208 269 19 0 chr4 201333641 201333693 -994654 - L2 LINE L2 -3 3269 3217 192 348 118 44 chr4 201334517 201334787 -993560 - L2 LINE L2 -1803 1511 1222 513 238 73 0 chr4 201334794 201334958 -993389 - L1M4 LINE L1 -2044 4102 3927 627 175 231 0 chr4 201335188 201335348 -992999 - L1ME1 LINE L1 -270 6176 5980 480 212 38 54 chr4 201335400 201335463 -992884 - L1ME1 LINE L1 -949 5477 5414 2226 120 0 0 chr4 201335463 201335755 -992592 - AluSx SINE Alu -20 292 1 480 212 38 54 chr4 201335755 201335875 -992472 - L1ME1 LINE L1 -1012 5414 5297 2378 102 0 6 chr4 201335876 201336189 -992158 - AluY SINE Alu 0 311 1 414 210 16 16 chr4 201336190 201336314 -992033 - L1ME1 LINE L1 -1085 5341 5218 2189 131 0 0 chr4 201336391 201336681 -991666 - AluSx SINE Alu -22 290 1 713 76 21 35 chr4 201336681 201336825 -991522 + (TTTC)n Simple_repeat Simple_repeat 2 143 0 1625 143 26 15 chr4 201336825 201337091 -991256 - AluSx SINE Alu -36 276 8 566 251 185 3 chr4 201337118 201337497 -990850 - L1ME1 LINE L1 -2581 3845 3398 * 668 249 133 26 chr4 201337492 201337829 -990518 - L1ME1 LINE L1 -4577 2030 1480 1556 153 8 38 chr4 201337830 201337998 -990349 - AluSx SINE Alu -9 303 144 2245 123 3 0 chr4 201337998 201338300 -990047 - AluSp SINE Alu -10 303 1 1556 153 8 38 chr4 201338300 201338393 -989954 - AluSx SINE Alu -168 144 50 516 247 11 34 chr4 201338613 201338791 -989556 + L1MC4 LINE L1 7865 8038 -4 271 236 182 9 chr4 201339092 201339202 -989145 - MIR3 SINE MIR -65 143 15 26 30 0 0 chr4 201339457 201339490 -988857 + AT_rich Low_complexity Low_complexity 1 33 0 186 71 0 0 chr4 201339493 201339521 -988826 + (T)n Simple_repeat Simple_repeat 1 28 0 309 170 0 0 chr4 201339525 201339572 -988775 - MER66A LTR ERV1 -142 336 290 368 273 112 77 chr4 201339679 201339792 -988555 - L1ME LINE L1 -301 5820 5712 2198 113 24 0 chr4 201339792 201340083 -988264 - AluSx SINE Alu -14 298 1 368 273 112 77 chr4 201340083 201340271 -988076 - L1ME LINE L1 -409 5712 5532 2416 97 0 0 chr4 201340271 201340581 -987766 + AluSq SINE Alu 1 310 -3 368 273 112 77 chr4 201340581 201340798 -987549 - L1ME LINE L1 -589 5532 5283 2017 126 0 0 chr4 201340905 201341216 -987131 - AluSx SINE Alu 0 315 5 223 284 14 14 chr4 201341455 201341529 -986818 + L2 LINE L2 3176 3249 -64 21 0 0 0 chr4 201341563 201341584 -986763 + AT_rich Low_complexity Low_complexity 1 21 0 2187 117 0 3 chr4 201342128 201342426 -985921 - AluSg SINE Alu -13 297 1 328 328 35 12 chr4 201344120 201344291 -984056 - L1M4 LINE L1 -526 5658 5484 951 128 0 14 chr4 201344541 201344682 -983665 - AluSg/x SINE Alu -20 290 152 3766 187 60 9 chr4 201344683 201345754 -982593 - L1MB7 LINE L1 -69 6115 4997 238 287 43 72 chr4 201345913 201346122 -982225 - L1MEd LINE L1 -4576 1820 1618 615 277 105 19 chr4 201346222 201346688 -981659 - L1MEd LINE L1 -4880 1325 969 1876 107 8 4 chr4 201347170 201347433 -980914 + AluY SINE Alu 1 264 -47 392 268 52 33 chr4 201347923 201348076 -980271 - MIR SINE MIR -99 163 8 553 245 93 46 chr4 201348076 201348313 -980034 + MIR SINE MIR 14 261 -1 486 210 0 0 chr4 201349180 201349304 -979043 + (TCCA)n Simple_repeat Simple_repeat 3 126 0 309 274 124 0 chr4 201349727 201349840 -978507 + MIR SINE MIR 19 145 -63 296 203 0 0 chr4 201350004 201350063 -978284 - MIR SINE MIR -89 119 61 285 274 32 0 chr4 201350078 201350173 -978174 + MIR SINE MIR 45 142 -66 192 313 171 17 chr4 201351581 201351821 -976526 - L2 LINE L2 -459 2855 2579 561 236 0 0 chr4 201352484 201352658 -975689 + (ATG)n Simple_repeat Simple_repeat 3 176 0 264 268 46 34 chr4 201353472 201353591 -974756 - MIR SINE MIR -65 143 33 394 242 23 23 chr4 201353931 201354063 -974284 - L2 LINE L2 -214 3058 2927 232 254 147 102 chr4 201354139 201354316 -974031 - MER5A DNA MER1_type -2 187 3 207 0 0 0 chr4 201354488 201354511 -973836 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 638 182 9 0 chr4 201354511 201354621 -973726 - FLAM_C SINE Alu -22 121 11 396 280 0 8 chr4 201354626 201354744 -973603 + L2 LINE L2 3132 3248 -65 1363 192 30 67 chr4 201354987 201355315 -973032 + Tigger3(Golem) DNA MER2_type 2671 2986 -43 932 287 155 3 chr4 201355368 201355968 -972379 + L2 LINE L2 599 1289 -2025 378 260 16 16 chr4 201356016 201356139 -972208 - MIR SINE MIR -47 215 93 562 274 34 0 chr4 201356192 201356396 -971951 + L2 LINE L2 1319 1529 -1785 388 310 42 0 chr4 201356501 201356643 -971704 + L2 LINE L2 3139 3286 -27 344 321 55 0 chr4 201356667 201356776 -971571 - L2 LINE L2 -36 3236 3122 255 250 107 0 chr4 201357366 201357450 -970897 - L1ME LINE L1 -333 5829 5737 203 184 0 20 chr4 201360312 201360361 -967986 + (TA)n Simple_repeat Simple_repeat 1 48 0 189 107 0 0 chr4 201361719 201361747 -966600 + (GA)n Simple_repeat Simple_repeat 2 29 0 895 273 79 4 chr4 201363097 201363551 -964796 - L1M4 LINE L1 -3412 2734 2247 38 61 0 0 chr4 201363552 201363618 -964729 + AT_rich Low_complexity Low_complexity 1 66 0 767 177 177 6 chr4 201363752 201363927 -964420 - AluSg/x SINE Alu -21 288 84 1067 213 88 40 chr4 201363927 201364255 -964092 + MER119 DNA MER1_type 75 418 -165 2173 251 82 43 chr4 201364256 201365303 -963044 - L1ME1 LINE L1 -77 6089 4997 299 267 15 82 chr4 201365335 201365470 -962877 - MLT1K LTR MaLR -114 474 349 183 274 32 0 chr4 201366744 201366806 -961541 - L2 LINE L2 -1 3312 3249 546 284 64 5 chr4 201366949 201367167 -961180 - MIR SINE MIR -1 261 31 290 318 19 0 chr4 201368736 201368843 -959504 - L2 LINE L2 -18 3254 3146 2012 122 77 0 chr4 201369536 201369823 -958524 - AluSg SINE Alu -1 309 1 262 288 42 8 chr4 201370157 201370275 -958072 - MER94 DNA DNA -2 132 11 750 218 63 5 chr4 201370373 201370579 -957768 - MER90 LTR ERV1 0 614 397 247 203 17 0 chr4 201370985 201371044 -957303 + GA-rich Low_complexity Low_complexity 2 61 0 270 73 0 0 chr4 201371044 201371085 -957262 + (CA)n Simple_repeat Simple_repeat 2 42 0 913 218 69 75 chr4 201371089 201371581 -956766 - SST1 Satellite centromeric -1 1562 1074 195 69 0 0 chr4 201371583 201371612 -956735 + (T)n Simple_repeat Simple_repeat 1 29 0 7372 58 16 14 chr4 201371769 201372862 -955485 - SVA Other Other -875 1386 370 798 78 86 0 chr4 201372962 201373078 -955269 - MER85 DNA T2_type -12 127 2 1241 208 18 29 chr4 201374110 201374389 -953958 + MER57-int LTR ERV1 2079 2354 -3592 912 130 97 19 chr4 201374381 201374588 -953759 + MER57-int LTR ERV1 1828 2050 -6070 * 878 181 98 10 chr4 201374597 201374802 -953545 + MER57-int LTR ERV1 3419 3641 -3896 905 136 0 0 chr4 201374806 201374931 -953416 - AluSp SINE Alu -188 125 1 1997 137 21 0 chr4 201375068 201375353 -952994 - AluSx SINE Alu -21 291 1 764 150 7 54 chr4 201375429 201375576 -952771 - FLAM_C SINE Alu -2 141 2 1526 188 52 3 chr4 201376179 201376466 -951881 - AluJo SINE Alu -9 303 3 440 250 79 97 chr4 201377504 201378141 -950206 - HSREP522 Satellite telomeric -113 625 1 21 0 0 0 chr4 201378986 201379007 -949340 + AT_rich Low_complexity Low_complexity 1 21 0 2226 135 25 22 chr4 201379021 201379384 -948963 - THE1B LTR MaLR 0 364 1 24 32 0 0 chr4 201379828 201379859 -948488 + AT_rich Low_complexity Low_complexity 1 31 0 929 313 234 27 chr4 201380525 201381967 -946380 - L2 LINE L2 -421 2893 1154 635 245 0 19 chr4 201382232 201382387 -945960 + MER101 LTR ERV1 230 381 -93 946 289 91 67 chr4 201382498 201382816 -945531 - L2 LINE L2 -2161 1153 844 1698 159 36 4 chr4 201382816 201383093 -945254 - AluSx SINE Alu -26 286 1 946 289 91 67 chr4 201383093 201383680 -944667 - L2 LINE L2 -2470 844 227 245 276 35 69 chr4 201383818 201383963 -944384 + MLT1J LTR MaLR 16 155 -356 1903 209 72 17 chr4 201385469 201385973 -942374 - L1MB8 LINE L1 -6 6172 5644 994 228 42 4 chr4 201385983 201386242 -942105 - MER33 DNA MER1_type -50 274 6 241 146 45 45 chr4 201388292 201388381 -939966 + (TA)n Simple_repeat Simple_repeat 2 90 0 225 226 38 0 chr4 201389202 201389255 -939092 + MIR SINE MIR 90 144 -118 236 272 96 40 chr4 201389459 201389584 -938763 - L2 LINE L2 -21 3292 3161 1615 197 7 3 chr4 201389981 201390271 -938076 + AluJo SINE Alu 3 293 -19 6253 206 34 35 chr4 201390286 201391609 -936738 - L1MA7 LINE L1 -6 6285 4973 2089 134 0 0 chr4 201391609 201391908 -936439 - AluSx SINE Alu -13 299 1 6253 206 34 35 chr4 201391908 201392950 -935397 - L1MA7 LINE L1 -1318 4973 3932 246 305 155 22 chr4 201392954 201393180 -935167 - L1M3f LINE L1 -4766 584 329 237 254 17 0 chr4 201393243 201393302 -935045 - L1M3f LINE L1 -4962 388 329 231 262 16 0 chr4 201393302 201393363 -934984 - L1M3f LINE L1 -4960 390 329 231 262 16 0 chr4 201393363 201393424 -934923 - L1M3f LINE L1 -4960 390 329 539 308 46 26 chr4 201393485 201393897 -934450 - L1M3f LINE L1 -4960 390 3 818 181 26 36 chr4 201394161 201394354 -933993 - MER20 DNA MER1_type 0 219 29 390 227 7 13 chr4 201396499 201396649 -931698 + CT-rich Low_complexity Low_complexity 4 152 0 186 270 0 0 chr4 201396648 201396711 -931636 + T-rich Low_complexity Low_complexity 1 63 0 * 1869 193 63 31 chr4 201396767 201397212 -931135 - LTR2B LTR ERV1 0 490 32 752 84 0 0 chr4 201398082 201398177 -930170 - THE1C LTR MaLR -280 95 1 425 298 19 6 chr4 201398179 201398340 -930007 - L1MEc LINE L1 -4267 2871 2709 1068 261 9 43 chr4 201398341 201398690 -929657 + Tigger6 DNA MER2_type 2 338 -1259 305 342 0 26 chr4 201398746 201398898 -929449 + Tigger3(Golem) DNA MER2_type 1409 1556 -1473 212 350 62 0 chr4 201400444 201400541 -927806 - MIR3 SINE MIR -39 169 67 1242 230 63 52 chr4 201401011 201401455 -926892 - L1MD2 LINE L1 -18 6341 5893 30 27 0 0 chr4 201403210 201403247 -925100 + AT_rich Low_complexity Low_complexity 1 37 0 1572 154 73 4 chr4 201403925 201404197 -924150 - AluSx SINE Alu -21 291 1 328 252 19 47 chr4 201404251 201404358 -923989 - HAL1b LINE L1 -772 576 473 1879 162 20 17 chr4 201404428 201404536 -923811 - L1MB1 LINE L1 -132 6036 5929 724 267 41 22 chr4 201404536 201404806 -923541 - L1PB4 LINE L1 -231 5925 5651 438 361 49 4 chr4 201404854 201405120 -923227 - L1MEc LINE L1 -5811 1136 859 885 141 0 80 chr4 201405176 201405339 -923008 + U1 snRNA snRNA 1 150 -15 249 354 50 0 chr4 201405604 201405703 -922644 + MLT1K LTR MaLR 126 229 -359 1606 221 0 0 chr4 201406436 201406793 -921554 + L1P LINE L1 4988 5344 -802 25 31 0 0 chr4 201408001 201408033 -920314 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr4 201408039 201408081 -920266 + AT_rich Low_complexity Low_complexity 1 42 0 30 0 0 0 chr4 201408630 201408660 -919687 + AT_rich Low_complexity Low_complexity 1 30 0 1065 279 164 23 chr4 201410055 201410783 -917564 - L1MC4a LINE L1 -1641 6167 5338 227 304 82 46 chr4 201410799 201411214 -917133 - L1MC4a LINE L1 -836 5310 4881 990 224 50 67 chr4 201411292 201411591 -916756 - L1MEc LINE L1 -6536 323 30 501 297 138 26 chr4 201412254 201412675 -915672 - HAL1b LINE L1 -504 844 377 245 243 138 81 chr4 201413110 201413357 -914990 - HAL1b LINE L1 -813 535 275 2356 92 0 7 chr4 201415967 201416270 -912077 + AluSg SINE Alu 1 301 -9 193 296 25 12 chr4 201418713 201418794 -909553 - MIR SINE MIR -1 261 180 6969 103 186 84 chr4 201418794 201420332 -908015 + pTR5 LTR ERV1 744 2438 0 666 236 79 6 chr4 201420426 201420604 -907743 - MLT1A1 LTR MaLR -2 363 173 * 1347 205 34 0 chr4 201420601 201420840 -907507 - MLT1A1 LTR MaLR -113 252 6 1940 170 117 42 chr4 201421024 201421453 -906894 - LOR1b LTR ERV1 0 461 1 342 248 15 92 chr4 201421488 201421694 -906653 + MER34 LTR ERV1 353 542 0 421 357 6 13 chr4 201422150 201422307 -906040 + MIR3 SINE MIR 21 176 -32 1206 113 38 5 chr4 201422310 201422496 -905851 - pTR5 LTR ERV1 -2046 392 201 262 244 23 84 chr4 201422496 201422627 -905720 - LTR30 LTR ERV1 -56 666 544 3662 145 107 35 chr4 201422627 201423559 -904788 - pTR5 LTR ERV1 -413 2025 743 277 298 57 16 chr4 201425179 201425303 -903044 - MIR SINE MIR -37 225 97 300 279 108 8 chr4 201425345 201425474 -902873 + MIR SINE MIR 65 206 -56 1890 205 66 88 chr4 201425752 201425784 -902563 - MLT2B1 LTR ERVL 0 520 489 342 0 0 0 chr4 201425784 201425822 -902525 + (TG)n Simple_repeat Simple_repeat 2 39 0 1890 205 66 88 chr4 201425822 201426321 -902026 - MLT2B1 LTR ERVL -31 489 1 458 283 151 0 chr4 201426792 201426958 -901389 + L2 LINE L2 1045 1235 -2079 868 222 0 20 chr4 201426958 201427161 -901186 - MER45R DNA AcHobo 0 1581 1383 2543 270 206 22 chr4 201427212 201428737 -899610 + L2 LINE L2 1229 3059 -254 413 262 28 9 chr4 201428782 201428889 -899458 + L2 LINE L2 3203 3311 -2 23 86 0 0 chr4 201430340 201430398 -897949 + AT_rich Low_complexity Low_complexity 1 58 0 466 271 141 31 chr4 201430439 201430864 -897483 + L1ME4a LINE L1 5592 6063 -58 290 348 56 24 chr4 201430949 201431199 -897148 - MER102a DNA MER1_type -34 296 39 288 288 25 0 chr4 201431400 201431480 -896867 + CT-rich Low_complexity Low_complexity 3 84 0 340 248 40 10 chr4 201431590 201431691 -896656 - Charlie1 DNA MER1_type -1 2760 2657 35 24 0 0 chr4 201431691 201431733 -896614 + AT_rich Low_complexity Low_complexity 1 42 0 237 213 81 22 chr4 201431735 201431871 -896476 - Charlie1 DNA MER1_type -72 2689 2546 2216 112 0 7 chr4 201431886 201432182 -896165 + AluSx SINE Alu 2 295 -17 1372 224 43 16 chr4 201432196 201432567 -895780 - Charlie1b DNA MER1_type -138 385 5 307 183 17 0 chr4 201433114 201433174 -895173 - L1PA16 LINE L1 -9 6157 6097 * 670 185 35 45 chr4 201433145 201433336 -895011 - L1PA16 LINE L1 -70 6093 5902 211 283 18 30 chr4 201435564 201435730 -892617 + (TG)n Simple_repeat Simple_repeat 2 165 0 360 256 139 16 chr4 201436364 201436493 -891854 + L2 LINE L2 3123 3267 -5 209 307 136 0 chr4 201436512 201436600 -891747 - L2 LINE L2 -15 3257 3158 211 278 102 91 chr4 201436769 201436945 -891402 + MIR SINE MIR 9 186 -76 1961 170 35 42 chr4 201436957 201437358 -890989 - MSTC LTR MaLR 0 428 31 3948 122 194 27 chr4 201437510 201438218 -890129 - LTR12 LTR ERV1 0 826 1 316 233 76 53 chr4 201438247 201438509 -889838 - pTR5 LTR ERV1 -1376 1062 795 1008 257 59 91 chr4 201438651 201439211 -889136 + MER34 LTR ERV1 1 542 0 * 1494 242 101 8 chr4 201439211 201439601 -888746 + MLT1G LTR MaLR 164 590 0 342 0 0 0 chr4 201440079 201440117 -888230 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 284 339 91 16 chr4 201441422 201441543 -886804 - L2 LINE L2 -4 3268 3139 1116 221 99 72 chr4 201442051 201442428 -885919 - MLT1C LTR MaLR -6 461 69 210 37 0 0 chr4 201442428 201442455 -885892 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1116 221 99 72 chr4 201442455 201442521 -885826 - MLT1C LTR MaLR -398 69 6 2302 81 0 0 chr4 201442598 201442881 -885466 - AluSg SINE Alu -23 287 5 686 97 53 9 chr4 201442995 201443108 -885239 + L1MA10 LINE L1 6213 6330 -4 2287 121 0 0 chr4 201443194 201443501 -884846 + AluSx SINE Alu 1 307 -5 27 62 0 0 chr4 201443695 201443743 -884604 + AT_rich Low_complexity Low_complexity 1 48 0 1763 207 27 3 chr4 201444107 201444441 -883906 - MER2 DNA MER2_type -2 342 1 431 287 145 43 chr4 201444635 201444917 -883430 + LTR16B LTR ERVL 2 312 -152 451 223 108 0 chr4 201445002 201445132 -883215 - L2 LINE L2 -345 2969 2826 183 244 44 0 chr4 201445571 201445616 -882731 + L2 LINE L2 3210 3256 -16 322 256 32 64 chr4 201447146 201447271 -881076 + L2 LINE L2 3183 3303 -10 244 306 50 40 chr4 201447387 201447561 -880786 + MIR3 SINE MIR 7 176 -63 1473 201 74 108 chr4 201448114 201448196 -880151 - MLT2B1 LTR ERVL 0 520 437 2213 107 0 0 chr4 201448196 201448496 -879851 - AluSc SINE Alu -9 300 1 1473 201 74 108 chr4 201448496 201448951 -879396 - MLT2B1 LTR ERVL -83 437 1 639 203 66 44 chr4 201449423 201449605 -878742 + MER74B LTR ERVL 415 600 -22 1652 217 113 7 chr4 201452057 201452472 -875875 + MER65C LTR ERV1 1 459 -2 195 100 0 0 chr4 201454180 201454210 -874137 + (TA)n Simple_repeat Simple_repeat 2 31 0 3190 162 42 29 chr4 201454300 201454892 -873455 + LTR9 LTR ERV1 1 600 -12 195 263 70 0 chr4 201454902 201454959 -873388 - L2 LINE L2 -19 3253 3193 236 375 10 10 chr4 201455577 201455673 -872674 + L2 LINE L2 3122 3217 -55 200 200 0 0 chr4 201455866 201455901 -872446 + (TG)n Simple_repeat Simple_repeat 2 36 0 1472 211 21 52 chr4 201455904 201456288 -872059 - MLT2D LTR ERVL -37 377 6 1709 193 37 29 chr4 201456463 201456846 -871501 + MER58D DNA MER1_type 1 386 0 192 77 0 0 chr4 201457929 201457955 -870392 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 294 248 73 10 chr4 201459882 201459979 -868368 - MIR SINE MIR -62 146 52 4884 96 5 8 chr4 201460142 201460811 -867536 - PABL_B LTR ERV1 0 667 1 323 239 64 37 chr4 201461164 201461273 -867074 + MLT1J2 LTR MaLR 64 175 -275 547 230 63 51 chr4 201461306 201461503 -866844 + MLT1J2 LTR MaLR 266 447 -3 225 312 11 11 chr4 201461573 201461666 -866681 + T-rich Low_complexity Low_complexity 1 93 0 330 271 146 28 chr4 201463076 201463220 -865127 - MIR SINE MIR -65 197 37 225 154 0 0 chr4 201463572 201463611 -864736 + GA-rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr4 201464060 201464092 -864255 + AT_rich Low_complexity Low_complexity 1 32 0 204 387 6 0 chr4 201465147 201465315 -863032 + C-rich Low_complexity Low_complexity 5 173 0 329 357 6 0 chr4 201465435 201465603 -862744 + C-rich Low_complexity Low_complexity 5 173 0 1975 156 58 0 chr4 201466664 201466991 -861356 - MER7A DNA MER2_type 0 346 3 189 0 0 0 chr4 201467692 201467713 -860634 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 24 53 0 0 chr4 201468631 201468669 -859678 + AT_rich Low_complexity Low_complexity 1 38 0 299 25 25 0 chr4 201468785 201468825 -859522 + (TG)n Simple_repeat Simple_repeat 1 41 0 2459 46 0 0 chr4 201468859 201469182 -859165 - AluY SINE Alu 0 323 1 235 276 35 0 chr4 201469194 201469281 -859066 - MIR SINE MIR -106 156 67 180 0 0 0 chr4 201469618 201469638 -858709 + (TA)n Simple_repeat Simple_repeat 1 20 0 919 141 14 0 chr4 201469652 201469794 -858553 - AluSg/x SINE Alu -30 280 137 22 56 0 0 chr4 201470074 201470110 -858237 + AT_rich Low_complexity Low_complexity 1 36 0 222 174 0 0 chr4 201470472 201470518 -857829 + (TA)n Simple_repeat Simple_repeat 2 47 0 256 185 0 0 chr4 201470523 201470577 -857770 - L1MC3 LINE L1 -1133 6652 6599 27 103 0 0 chr4 201470629 201470726 -857621 + AT_rich Low_complexity Low_complexity 1 97 0 2356 116 30 19 chr4 201470731 201471102 -857245 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr4 201471106 201471134 -857213 + AT_rich Low_complexity Low_complexity 1 28 0 3976 185 74 24 chr4 201471199 201472021 -856326 - MER21B LTR ERV1 0 863 1 2956 185 24 42 chr4 201472029 201472652 -855695 + LTR9 LTR ERV1 1 612 0 270 0 0 0 chr4 201472708 201472738 -855609 + (CA)n Simple_repeat Simple_repeat 2 31 0 489 224 19 6 chr4 201473773 201473934 -854413 + CT-rich Low_complexity Low_complexity 3 165 0 3570 161 5 27 chr4 201474637 201475263 -853084 - LTR9 LTR ERV1 0 612 1 229 263 0 18 chr4 201475373 201475430 -852917 + MER34 LTR ERV1 67 122 -420 * 1042 229 51 56 chr4 201475397 201475790 -852557 + MER39 LTR ERV1 250 640 -67 2285 222 55 27 chr4 201475847 201476447 -851900 - L1ME1 LINE L1 -93 6073 5457 1853 219 95 99 chr4 201476964 201477719 -850628 - MER21B LTR ERV1 -111 752 1 1397 185 54 108 chr4 201477740 201478242 -850105 - MER31A LTR ERV1 -8 477 3 2182 110 3 0 chr4 201478996 201479287 -849060 - AluSg SINE Alu -18 292 1 1095 129 0 0 chr4 201481307 201481485 -846862 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 2003 128 7 13 chr4 201481487 201481785 -846562 - AluSx SINE Alu -16 296 1 226 256 0 51 chr4 201482167 201482245 -846102 + MER34 LTR ERV1 67 140 -402 2023 122 7 0 chr4 201482256 201482562 -845785 + AluSx SINE Alu 1 308 0 1019 260 39 46 chr4 201482568 201482956 -845391 + MER39 LTR ERV1 300 684 -23 2198 108 3 3 chr4 201483424 201483721 -844626 - AluSc SINE Alu -12 297 1 342 0 0 0 chr4 201483943 201483981 -844366 + (CA)n Simple_repeat Simple_repeat 2 39 0 27 49 0 0 chr4 201485529 201485570 -842777 + AT_rich Low_complexity Low_complexity 1 41 0 403 338 99 48 chr4 201486020 201486427 -841920 + L3 LINE CR1 229 684 -893 1741 57 0 0 chr4 201486427 201486638 -841709 + L1PA5 LINE L1 5944 6154 0 403 338 99 48 chr4 201486638 201486883 -841464 + L3 LINE CR1 684 915 -662 441 274 146 24 chr4 201487011 201487282 -841065 + MLT1G1 LTR MaLR 1 277 -313 1669 107 13 0 chr4 201487283 201487517 -840830 + AluSg SINE Alu 59 295 -15 238 244 44 33 chr4 201487701 201487791 -840556 + MLT1G1 LTR MaLR 465 555 0 1061 235 40 64 chr4 201487933 201488337 -840010 - MSTD LTR MaLR -2 394 1 224 300 12 38 chr4 201488906 201488986 -839361 + MER5B DNA MER1_type 23 100 -78 2512 153 13 0 chr4 201491029 201491427 -836920 + MER57A LTR ERV1 1 403 0 7634 115 160 79 chr4 201494878 201496456 -831891 + pTR5 LTR ERV1 733 2438 0 197 31 94 0 chr4 201497229 201497261 -831086 + A-rich Low_complexity Low_complexity 2 36 0 502 225 0 63 chr4 201498387 201498529 -829818 + Charlie4 DNA MER1_type 1818 1950 -11 281 294 11 11 chr4 201499014 201499106 -829241 + GA-rich Low_complexity Low_complexity 2 93 0 560 244 104 0 chr4 201499336 201499471 -828876 + FRAM SINE Alu 1 141 -35 521 196 0 10 chr4 201500681 201500778 -827569 - MER20 DNA MER1_type 0 219 124 21 71 0 0 chr4 201502422 201502464 -825883 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr4 201502591 201502613 -825734 + AT_rich Low_complexity Low_complexity 1 22 0 373 299 40 23 chr4 201502660 201502837 -825510 - L1ME LINE L1 -305 5816 5637 296 290 35 10 chr4 201503231 201503411 -824936 - MLT1D LTR MaLR 0 467 284 377 317 41 15 chr4 201503417 201503685 -824662 - L1ME LINE L1 -5214 856 582 2125 243 24 6 chr4 201503690 201504224 -824123 - MER74A LTR ERVL -2 556 13 342 187 22 30 chr4 201504630 201504764 -823583 + GA-rich Low_complexity Low_complexity 4 136 0 225 317 0 24 chr4 201504769 201504851 -823496 + G-rich Low_complexity Low_complexity 6 85 0 1162 236 102 3 chr4 201505029 201505381 -822966 + MLT1B LTR MaLR 4 390 0 281 319 51 7 chr4 201505401 201505539 -822808 - L1ME LINE L1 -5911 159 16 227 246 0 0 chr4 201505903 201505960 -822387 - MLT1L LTR MaLR -17 598 542 592 260 104 10 chr4 201506347 201506539 -821808 + MER63A DNA MER1_type 1 210 0 863 234 48 0 chr4 201506604 201506813 -821534 - MER20 DNA MER1_type 0 219 1 204 109 130 0 chr4 201507748 201507794 -820553 + MER5C DNA MER1_type 71 122 -202 198 239 30 0 chr4 201507824 201507891 -820456 + MER5C DNA MER1_type 214 282 -42 1080 161 22 11 chr4 201509136 201509316 -819031 - LTR32 LTR ERVL -5 466 285 292 105 0 88 chr4 201509330 201509387 -818960 - LTR32 LTR ERVL -407 64 13 527 291 78 0 chr4 201509391 201509570 -818777 - HERVL32 LTR ERVL -4 3414 3222 444 169 300 56 chr4 201509694 201509854 -818493 - HERVL32 LTR ERVL -869 2549 2351 725 309 64 23 chr4 201509963 201510306 -818041 - HERVL32 LTR ERVL -2107 1311 955 1174 251 35 40 chr4 201510317 201510692 -817655 - HERVL32 LTR ERVL -2380 1038 666 2258 262 15 36 chr4 201510757 201511441 -816906 - HERVL32 LTR ERVL -2698 720 52 260 254 0 0 chr4 201511711 201511770 -816577 - HERVL32 LTR ERVL -3308 110 52 900 228 22 11 chr4 201511874 201512058 -816289 - LTR32 LTR ERVL -1 470 285 247 222 48 0 chr4 201512058 201512121 -816226 - LTR32 LTR ERVL -391 80 15 680 241 90 50 chr4 201513413 201513725 -814622 + MLT1H LTR MaLR 1 371 -178 249 312 114 17 chr4 201514144 201514324 -814023 + MIR SINE MIR 35 232 -30 2219 221 93 35 chr4 201514505 201514962 -813385 + L1ME3A LINE L1 5438 5951 -219 2105 113 14 7 chr4 201514962 201515254 -813093 + AluSg SINE Alu 1 294 -16 2219 221 93 35 chr4 201515254 201515483 -812864 + L1ME3A LINE L1 5951 6165 -5 377 155 17 0 chr4 201515638 201515696 -812651 + Tigger5 DNA MER2_type 2265 2323 0 463 186 12 0 chr4 201515749 201515835 -812512 + Tigger5 DNA MER2_type 2237 2323 0 1539 237 32 4 chr4 201516685 201517094 -811253 - MER70A LTR ERVL 0 472 1 351 252 224 9 chr4 201517609 201517819 -810528 + L2 LINE L2 3059 3313 0 816 216 213 23 chr4 201518292 201518857 -809490 - LTR50 LTR ERVL -8 787 8 1518 225 94 156 chr4 201519139 201520540 -807807 - L1MC4 LINE L1 0 8042 6729 954 301 52 17 chr4 201520558 201521019 -807328 - L1MC4a LINE L1 -1743 6065 5589 1825 136 20 24 chr4 201521023 201521318 -807029 + AluSq SINE Alu 1 294 -19 231 275 0 11 chr4 201521350 201521441 -806906 + L1MC4 LINE L1 6614 6703 -1339 273 146 0 0 chr4 201521442 201521490 -806857 + (TG)n Simple_repeat Simple_repeat 1 48 0 862 301 23 10 chr4 201521491 201521793 -806554 - L1MC4a LINE L1 -2234 5574 5269 972 127 7 0 chr4 201521964 201522114 -806233 + L1MB4 LINE L1 6016 6166 -14 370 339 51 17 chr4 201522145 201522437 -805910 - L1MC4a LINE L1 -1112 5034 4733 275 0 29 0 chr4 201524088 201524123 -804224 + (CA)n Simple_repeat Simple_repeat 1 36 0 836 232 8 54 chr4 201524151 201524392 -803955 + MIR SINE MIR 23 252 -10 21 57 0 0 chr4 201524436 201524471 -803876 + AT_rich Low_complexity Low_complexity 1 35 0 411 73 0 0 chr4 201524583 201524638 -803709 + (TA)n Simple_repeat Simple_repeat 1 55 0 25 51 0 0 chr4 201524745 201524784 -803563 + AT_rich Low_complexity Low_complexity 1 39 0 281 78 0 20 chr4 201525778 201525829 -802518 + MER20B DNA MER1_type 611 660 -123 345 161 134 45 chr4 201525906 201526018 -802329 + MER20B DNA MER1_type 661 782 -1 4499 155 49 1 chr4 201528661 201529443 -798904 - Tigger3(Golem) DNA MER2_type -1 3028 2210 225 329 157 7 chr4 201529663 201529803 -798544 - L2 LINE L2 -5 3267 3107 1661 186 0 19 chr4 201530093 201530405 -797942 + AluJo SINE Alu 2 307 -5 1349 217 86 9 chr4 201531233 201531570 -796777 + MLT1A1 LTR MaLR 2 364 -1 302 328 76 0 chr4 201531659 201531790 -796557 + MIR3 SINE MIR 13 153 -55 3999 118 23 5 chr4 201531818 201532419 -795928 - LTR9 LTR ERV1 0 612 1 381 284 105 74 chr4 201532507 201532887 -795460 + L2 LINE L2 2922 3313 0 319 330 0 10 chr4 201533959 201534062 -794285 - MIR SINE MIR -80 128 27 209 312 59 48 chr4 201534491 201534677 -793670 + L2 LINE L2 2034 2221 -1093 2122 149 0 0 chr4 201535249 201535590 -792757 - AluSc SINE Alu 0 341 1 1988 129 7 0 chr4 201535630 201535935 -792412 + AluSx SINE Alu 3 309 0 205 400 11 0 chr4 201536383 201536478 -791869 + L2 LINE L2 3208 3303 -10 22 0 0 0 chr4 201536757 201536779 -791568 + AT_rich Low_complexity Low_complexity 1 22 0 626 246 0 21 chr4 201536783 201536925 -791422 - MER58A DNA MER1_type -41 183 45 242 284 114 63 chr4 201538181 201538435 -789912 - MLT1I LTR MaLR -45 364 98 358 279 100 37 chr4 201538759 201538949 -789398 - MIR SINE MIR -38 224 23 244 305 35 35 chr4 201539024 201539165 -789182 + L1ME LINE L1 5605 5745 -376 186 128 0 0 chr4 201539470 201539509 -788838 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 1555 179 7 49 chr4 201539892 201540200 -788147 - AluJo SINE Alu -17 295 1 260 275 14 0 chr4 201541514 201541583 -786764 - MIR SINE MIR -62 146 77 35 0 0 0 chr4 201543048 201543083 -785264 + AT_rich Low_complexity Low_complexity 1 35 0 233 196 0 39 chr4 201543255 201543306 -785041 - L1PA12 LINE L1 -6866 715 667 2150 119 3 3 chr4 201543421 201543732 -784615 + AluSx SINE Alu 1 311 -1 1959 111 73 0 chr4 201544933 201545222 -783125 - AluSg SINE Alu 0 310 1 338 233 35 0 chr4 201545224 201545310 -783037 + MIR3 SINE MIR 117 205 -3 686 119 0 0 chr4 201546920 201547021 -781326 - AluSx SINE Alu -1 311 211 993 132 0 14 chr4 201547021 201547165 -781182 - AluSx SINE Alu -170 142 1 1101 253 97 16 chr4 201547454 201547889 -780458 - Charlie4a DNA MER1_type -38 470 1 249 163 0 0 chr4 201549576 201549625 -778722 + (CAAAG)n Simple_repeat Simple_repeat 1 49 0 290 245 166 14 chr4 201549942 201550081 -778266 + MER5A DNA MER1_type 2 161 -28 317 361 0 36 chr4 201550213 201550379 -777968 + MER5B DNA MER1_type 3 162 -16 2482 129 0 13 chr4 201551001 201551381 -776966 + THE1C LTR MaLR 1 375 0 298 289 7 35 chr4 201551610 201551752 -776595 + GA-rich Low_complexity Low_complexity 4 141 0 2370 106 0 0 chr4 201552908 201553211 -775136 + AluSc SINE Alu 1 303 -6 21 0 0 0 chr4 201553288 201553309 -775038 + AT_rich Low_complexity Low_complexity 1 21 0 463 290 45 55 chr4 201553765 201554001 -774346 - L1MEc LINE L1 -4684 1712 1475 1982 130 10 26 chr4 201554001 201554308 -774039 + AluSg SINE Alu 4 305 -5 246 62 0 0 chr4 201554308 201554340 -774007 + (TA)n Simple_repeat Simple_repeat 2 33 0 463 290 45 55 chr4 201554340 201554481 -773866 - L1MEc LINE L1 -4919 1477 1338 526 243 53 67 chr4 201554485 201554769 -773578 - L1MEc LINE L1 -5121 1275 996 493 265 184 0 chr4 201555565 201555712 -772635 - MER45A DNA AcHobo -4 174 1 765 237 10 5 chr4 201555722 201555920 -772427 + L1MA4 LINE L1 6097 6295 -5 407 342 25 36 chr4 201555956 201556152 -772195 + L1ME LINE L1 275 468 -5602 198 0 0 0 chr4 201556198 201556220 -772127 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 306 281 65 29 chr4 201556897 201557036 -771311 - MER5A DNA MER1_type -11 178 35 * 528 262 21 14 chr4 201556914 201557059 -771288 + MER5A DNA MER1_type 44 189 0 336 268 31 55 chr4 201558007 201558134 -770213 - MIR SINE MIR -40 222 99 2010 130 7 0 chr4 201559970 201560278 -768069 - AluSx SINE Alu -2 310 1 331 258 0 43 chr4 201560494 201560680 -767667 + (TAGGG)n Simple_repeat Simple_repeat 3 180 0 1847 83 4 0 chr4 201562828 201563081 -765266 - AluY SINE Alu -20 291 38 22 35 0 0 chr4 201566633 201566662 -761685 + AT_rich Low_complexity Low_complexity 1 29 0 189 309 32 98 chr4 201567153 201567276 -761071 - L2 LINE L2 -2 3311 3197 23 54 0 0 chr4 201568134 201568171 -760176 + AT_rich Low_complexity Low_complexity 1 37 0 464 303 36 5 chr4 201569357 201569552 -758795 - SST1 Satellite centromeric -1362 201 1 256 200 17 0 chr4 201570253 201570351 -757996 + GA-rich Low_complexity Low_complexity 1 99 0 1863 284 62 62 chr4 201570407 201571674 -756673 - SST1 Satellite centromeric -14 1549 284 192 97 0 0 chr4 201571750 201571781 -756566 + (CA)n Simple_repeat Simple_repeat 2 32 0 2099 274 49 62 chr4 201571785 201573081 -755266 - SST1 Satellite centromeric -1 1562 284 222 220 17 0 chr4 201573098 201573157 -755190 + GA-rich Low_complexity Low_complexity 2 61 0 255 61 0 0 chr4 201573157 201573190 -755157 + (CA)n Simple_repeat Simple_repeat 2 34 0 1992 292 48 55 chr4 201573194 201574504 -753843 - SST1 Satellite centromeric -1 1562 262 222 220 17 0 chr4 201574505 201574564 -753783 + GA-rich Low_complexity Low_complexity 2 61 0 222 91 0 0 chr4 201574564 201574597 -753750 + (CA)n Simple_repeat Simple_repeat 2 34 0 2146 280 50 56 chr4 201574601 201575910 -752437 - SST1 Satellite centromeric -1 1562 262 222 220 17 0 chr4 201575911 201575970 -752377 + GA-rich Low_complexity Low_complexity 2 61 0 222 37 0 0 chr4 201575970 201575997 -752350 + (CA)n Simple_repeat Simple_repeat 2 28 0 1979 276 53 63 chr4 201576001 201577292 -751055 - SST1 Satellite centromeric -1 1562 284 247 203 17 0 chr4 201577309 201577368 -750979 + GA-rich Low_complexity Low_complexity 2 61 0 222 91 0 0 chr4 201577368 201577401 -750946 + (CA)n Simple_repeat Simple_repeat 2 34 0 2041 285 46 59 chr4 201577405 201578700 -749647 - SST1 Satellite centromeric -1 1562 284 247 203 17 0 chr4 201578717 201578776 -749571 + GA-rich Low_complexity Low_complexity 2 61 0 222 91 0 0 chr4 201578776 201578809 -749538 + (CA)n Simple_repeat Simple_repeat 2 34 0 2081 284 49 54 chr4 201578830 201580105 -748242 - SST1 Satellite centromeric -11 1552 284 219 242 16 0 chr4 201580122 201580184 -748163 + GA-rich Low_complexity Low_complexity 2 64 0 189 74 0 0 chr4 201580185 201580212 -748135 + (CA)n Simple_repeat Simple_repeat 2 28 0 2242 277 49 57 chr4 201580233 201581512 -746835 - SST1 Satellite centromeric -11 1552 284 222 220 17 0 chr4 201581529 201581588 -746759 + GA-rich Low_complexity Low_complexity 2 61 0 333 47 0 0 chr4 201581588 201581631 -746716 + (CA)n Simple_repeat Simple_repeat 2 44 0 215 233 17 0 chr4 201581832 201581892 -746455 + CT-rich Low_complexity Low_complexity 2 62 0 1705 305 51 52 chr4 201581893 201583196 -745151 + SST1 Satellite centromeric 262 1562 -1 222 91 0 0 chr4 201583200 201583233 -745114 + (TG)n Simple_repeat Simple_repeat 2 34 0 1084 294 14 51 chr4 201583395 201583909 -744438 - SST1 Satellite centromeric -785 778 284 247 203 17 0 chr4 201583926 201583985 -744362 + GA-rich Low_complexity Low_complexity 2 61 0 222 91 0 0 chr4 201583985 201584018 -744329 + (CA)n Simple_repeat Simple_repeat 2 34 0 760 274 60 50 chr4 201584056 201584541 -743806 - SST1 Satellite centromeric -27 1536 1047 497 155 21 109 chr4 201584678 201584871 -743476 + SST1 Satellite centromeric 1387 1562 -1 348 24 0 0 chr4 201584875 201584916 -743431 + (TG)n Simple_repeat Simple_repeat 2 42 0 222 220 17 0 chr4 201584916 201584975 -743372 + CT-rich Low_complexity Low_complexity 2 61 0 1803 269 61 69 chr4 201584976 201586288 -742059 + SST1 Satellite centromeric 262 1562 -1 186 43 0 0 chr4 201586292 201586315 -742032 + (TG)n Simple_repeat Simple_repeat 2 24 0 222 220 17 0 chr4 201586315 201586374 -741973 + CT-rich Low_complexity Low_complexity 2 61 0 1960 274 59 66 chr4 201586375 201587685 -740662 + SST1 Satellite centromeric 262 1562 -1 258 32 0 0 chr4 201587689 201587720 -740627 + (TG)n Simple_repeat Simple_repeat 2 32 0 222 220 17 0 chr4 201587720 201587779 -740568 + CT-rich Low_complexity Low_complexity 2 61 0 1868 267 60 69 chr4 201587780 201589093 -739254 + SST1 Satellite centromeric 262 1562 -1 222 37 0 0 chr4 201589097 201589124 -739223 + (TG)n Simple_repeat Simple_repeat 2 28 0 222 220 17 0 chr4 201589124 201589183 -739164 + CT-rich Low_complexity Low_complexity 2 61 0 1852 274 63 62 chr4 201589184 201590484 -737863 + SST1 Satellite centromeric 262 1562 -1 276 30 0 0 chr4 201590488 201590521 -737826 + (TG)n Simple_repeat Simple_repeat 2 34 0 222 220 17 0 chr4 201590521 201590580 -737767 + CT-rich Low_complexity Low_complexity 2 61 0 827 298 30 47 chr4 201590581 201591047 -737300 + SST1 Satellite centromeric 262 719 -844 492 206 0 10 chr4 201591255 201591352 -736995 + MER20 DNA MER1_type 124 219 0 601 247 89 19 chr4 201592539 201592697 -735650 - FRAM SINE Alu -15 161 1 281 294 11 11 chr4 201592927 201593019 -735328 + CT-rich Low_complexity Low_complexity 2 93 0 462 225 0 63 chr4 201593504 201593646 -734701 - Charlie4 DNA MER1_type -11 1950 1818 197 31 94 0 chr4 201594772 201594804 -733543 + T-rich Low_complexity Low_complexity 2 36 0 7337 114 167 86 chr4 201595576 201597154 -731193 - pTR5 LTR ERV1 0 2438 733 1198 298 18 53 chr4 201599997 201600622 -727725 - SST1 Satellite centromeric -677 886 284 222 220 17 0 chr4 201600639 201600698 -727649 + GA-rich Low_complexity Low_complexity 2 61 0 222 91 0 0 chr4 201600698 201600731 -727616 + (CA)n Simple_repeat Simple_repeat 2 34 0 2028 270 52 67 chr4 201600735 201602033 -726314 - SST1 Satellite centromeric -1 1562 284 247 203 17 0 chr4 201602050 201602109 -726238 + GA-rich Low_complexity Low_complexity 2 61 0 333 47 0 0 chr4 201602109 201602152 -726195 + (CA)n Simple_repeat Simple_repeat 2 44 0 1984 277 52 64 chr4 201602156 201603451 -724896 - SST1 Satellite centromeric -1 1562 284 247 203 17 0 chr4 201603468 201603527 -724820 + GA-rich Low_complexity Low_complexity 2 61 0 207 69 0 0 chr4 201603527 201603556 -724791 + (CA)n Simple_repeat Simple_repeat 2 30 0 2015 288 50 57 chr4 201603600 201604862 -723485 - SST1 Satellite centromeric -327 1252 1 247 203 17 0 chr4 201604879 201604938 -723409 + GA-rich Low_complexity Low_complexity 2 61 0 333 47 0 0 chr4 201604938 201604981 -723366 + (CA)n Simple_repeat Simple_repeat 2 44 0 1801 277 50 62 chr4 201604985 201606212 -722135 - SST1 Satellite centromeric -1 1562 350 23 54 0 0 chr4 201606533 201606570 -721777 + AT_rich Low_complexity Low_complexity 1 37 0 503 287 36 5 chr4 201607756 201607951 -720396 - SST1 Satellite centromeric -1362 201 1 213 289 31 8 chr4 201608652 201608780 -719567 + (CAGA)n Simple_repeat Simple_repeat 2 132 0 * 259 257 28 9 chr4 201608688 201608797 -719550 + (CAGAGA)n Simple_repeat Simple_repeat 6 116 0 1930 279 57 61 chr4 201608806 201610077 -718270 - SST1 Satellite centromeric -14 1549 284 192 97 0 0 chr4 201610153 201610184 -718163 + (CA)n Simple_repeat Simple_repeat 2 32 0 2086 278 45 59 chr4 201610188 201611503 -716844 - SST1 Satellite centromeric -1 1562 267 238 207 17 0 chr4 201611503 201611561 -716786 + GA-rich Low_complexity Low_complexity 1 59 0 189 121 0 0 chr4 201611561 201611594 -716753 + (CA)n Simple_repeat Simple_repeat 2 34 0 2194 274 49 63 chr4 201611598 201612895 -715452 - SST1 Satellite centromeric -1 1562 284 247 203 17 0 chr4 201612912 201612971 -715376 + GA-rich Low_complexity Low_complexity 2 61 0 369 43 0 0 chr4 201612971 201613018 -715329 + (CA)n Simple_repeat Simple_repeat 2 48 0 959 302 17 48 chr4 201613274 201613810 -714537 - SST1 Satellite centromeric -761 802 284 247 203 17 0 chr4 201613827 201613886 -714461 + GA-rich Low_complexity Low_complexity 2 61 0 222 91 0 0 chr4 201613886 201613919 -714428 + (CA)n Simple_repeat Simple_repeat 2 34 0 2114 281 49 56 chr4 201613953 201615221 -713126 - SST1 Satellite centromeric -21 1542 284 211 200 0 0 chr4 201615238 201615283 -713064 + GA-rich Low_complexity Low_complexity 2 46 0 222 91 0 0 chr4 201615293 201615326 -713021 + (CA)n Simple_repeat Simple_repeat 2 34 0 2200 271 50 63 chr4 201615330 201616626 -711721 - SST1 Satellite centromeric -1 1562 284 251 213 16 0 chr4 201616641 201616702 -711645 + GA-rich Low_complexity Low_complexity 2 63 0 189 121 0 0 chr4 201616702 201616735 -711612 + (CA)n Simple_repeat Simple_repeat 2 34 0 2186 274 52 65 chr4 201616739 201618035 -710312 - SST1 Satellite centromeric -1 1562 284 236 200 18 0 chr4 201618052 201618107 -710240 + GA-rich Low_complexity Low_complexity 2 57 0 222 91 0 0 chr4 201618107 201618140 -710207 + (CA)n Simple_repeat Simple_repeat 2 34 0 2100 275 55 61 chr4 201618174 201619440 -708907 - SST1 Satellite centromeric -21 1542 284 251 213 16 0 chr4 201619455 201619516 -708831 + GA-rich Low_complexity Low_complexity 2 63 0 222 91 0 0 chr4 201619516 201619549 -708798 + (CA)n Simple_repeat Simple_repeat 2 34 0 2111 282 50 56 chr4 201619575 201620849 -707498 - SST1 Satellite centromeric -14 1549 284 247 203 17 0 chr4 201620866 201620925 -707422 + GA-rich Low_complexity Low_complexity 2 61 0 222 91 0 0 chr4 201620925 201620958 -707389 + (CA)n Simple_repeat Simple_repeat 2 34 0 2188 273 52 65 chr4 201620962 201622258 -706089 - SST1 Satellite centromeric -1 1562 284 247 203 17 0 chr4 201622275 201622334 -706013 + GA-rich Low_complexity Low_complexity 2 61 0 222 91 0 0 chr4 201622334 201622367 -705980 + (CA)n Simple_repeat Simple_repeat 2 34 0 2177 274 48 61 chr4 201622371 201623667 -704680 - SST1 Satellite centromeric -1 1562 284 247 203 17 0 chr4 201623684 201623743 -704604 + GA-rich Low_complexity Low_complexity 2 61 0 222 91 0 0 chr4 201623743 201623776 -704571 + (CA)n Simple_repeat Simple_repeat 2 34 0 2143 276 54 60 chr4 201623802 201625076 -703271 - SST1 Satellite centromeric -14 1549 284 247 203 17 0 chr4 201625093 201625152 -703195 + GA-rich Low_complexity Low_complexity 2 61 0 222 91 0 0 chr4 201625152 201625185 -703162 + (CA)n Simple_repeat Simple_repeat 2 34 0 2025 276 49 64 chr4 201625189 201626487 -701860 - SST1 Satellite centromeric -1 1562 284 222 220 17 0 chr4 201626504 201626563 -701784 + GA-rich Low_complexity Low_complexity 2 61 0 258 32 0 0 chr4 201626563 201626594 -701753 + (CA)n Simple_repeat Simple_repeat 2 32 0 2064 279 50 62 chr4 201626598 201627893 -700454 - SST1 Satellite centromeric -1 1562 284 256 200 17 0 chr4 201627908 201627970 -700377 + GA-rich Low_complexity Low_complexity 1 63 0 1893 277 56 67 chr4 201628006 201629321 -699026 - SST1 Satellite centromeric -1 1562 262 222 220 17 0 chr4 201629322 201629381 -698966 + GA-rich Low_complexity Low_complexity 2 61 0 330 26 0 0 chr4 201629381 201629420 -698927 + (CA)n Simple_repeat Simple_repeat 2 40 0 1896 282 48 61 chr4 201629424 201630720 -697627 - SST1 Satellite centromeric -1 1562 284 206 237 17 0 chr4 201630737 201630796 -697551 + GA-rich Low_complexity Low_complexity 2 61 0 243 61 0 0 chr4 201630796 201630829 -697518 + (CA)n Simple_repeat Simple_repeat 2 34 0 2195 275 48 63 chr4 201630833 201632131 -696216 - SST1 Satellite centromeric -1 1562 284 237 231 15 0 chr4 201632148 201632213 -696134 + GA-rich Low_complexity Low_complexity 2 67 0 285 51 0 0 chr4 201632213 201632252 -696095 + (CA)n Simple_repeat Simple_repeat 2 40 0 1323 260 71 68 chr4 201632273 201633093 -695254 - SST1 Satellite centromeric -11 1552 731 770 250 74 32 chr4 201633108 201633392 -694955 - L1MD2 LINE L1 -469 6150 5855 23 33 0 0 chr4 201633404 201633434 -694913 + AT_rich Low_complexity Low_complexity 1 30 0 285 235 0 0 chr4 201633454 201633539 -694808 + L1MA2 LINE L1 5987 6071 -233 1141 209 20 31 chr4 201633539 201633888 -694459 - L1MD2 LINE L1 -635 5867 5523 864 267 53 2 chr4 201633865 201634262 -694085 - L1MD2 LINE L1 -2869 3537 3121 * 606 249 96 48 chr4 201634293 201634647 -693700 - L1MD2 LINE L1 -4465 1941 1571 708 206 0 0 chr4 201634649 201634804 -693543 + L1MA5 LINE L1 4872 5026 -1120 3763 158 30 56 chr4 201634816 201635607 -692740 + L1MA5 LINE L1 5530 6300 0 184 396 94 12 chr4 201635629 201635874 -692473 - L3 LINE CR1 -1197 380 116 1077 214 42 112 chr4 201636112 201636612 -691735 + MLT1D LTR MaLR 1 465 -40 1930 245 18 22 chr4 201636620 201637361 -690986 - L1MD2 LINE L1 -4821 1585 845 2134 222 6 69 chr4 201637362 201637866 -690481 - MER70A LTR ERVL 0 472 1 13368 190 39 12 chr4 201637874 201638304 -690043 - MER70A-int LTR ERVL -1 5022 4605 1907 141 0 10 chr4 201638304 201638601 -689746 + AluSp SINE Alu 1 294 -19 13368 190 39 12 chr4 201638601 201640744 -687603 - MER70A-int LTR ERVL -418 4605 2380 1960 118 33 8 chr4 201640744 201641134 -687213 + LTR7 LTR ERV1 1 450 0 698 111 0 34 chr4 201641141 201641258 -687089 + HERVH LTR ERV1 2613 2725 -4988 6928 122 4 5 chr4 201641260 201642754 -685593 + HERVH LTR ERV1 3582 5286 -1805 2615 103 24 12 chr4 201642771 201643197 -685150 + HERVH LTR ERV1 7283 7713 0 1906 106 35 22 chr4 201643197 201643591 -684756 + LTR7 LTR ERV1 1 450 0 482 191 12 0 chr4 201643591 201643675 -684672 - MER70A-int LTR ERVL -2639 2384 2300 4622 206 84 12 chr4 201643694 201644698 -683649 - MER70A-int LTR ERVL -3947 1076 1 2381 235 4 13 chr4 201644698 201644928 -683419 - MER70A LTR ERVL 0 472 242 2006 106 20 13 chr4 201644928 201645231 -683116 - AluSq SINE Alu -8 305 1 2381 235 4 13 chr4 201645231 201645476 -682871 - MER70A LTR ERVL -230 242 1 1747 328 142 8 chr4 201645476 201646221 -682126 - L1MD2 LINE L1 -5561 848 4 24 0 0 0 chr4 201646551 201646575 -681772 + AT_rich Low_complexity Low_complexity 1 24 0 1276 205 104 18 chr4 201646658 201646936 -681411 - AluJo SINE Alu 0 302 1 2224 73 0 7 chr4 201647023 201647341 -681006 - AluY SINE Alu 0 316 1 2314 55 41 0 chr4 201647584 201647877 -680470 - AluY SINE Alu -6 305 1 2367 230 35 68 chr4 201650091 201650777 -677570 + MER76 LTR ERV 1 663 -25 1765 147 20 23 chr4 201650862 201651168 -677179 + AluSx SINE Alu 1 305 -7 426 196 11 33 chr4 201651238 201651330 -677017 + Tigger3b DNA MER2_type 1 90 -1141 432 0 0 0 chr4 201651330 201651378 -676969 + (TA)n Simple_repeat Simple_repeat 2 49 0 4135 154 65 24 chr4 201651391 201651657 -676690 + Tigger3b DNA MER2_type 332 586 -2442 7589 39 0 0 chr4 201651657 201653012 -675335 - L1PA3 LINE L1 0 6155 4801 4135 154 65 24 chr4 201653012 201653610 -674737 + Tigger3b DNA MER2_type 586 1231 0 931 251 30 34 chr4 201654089 201654384 -673963 + MER58B DNA MER1_type 36 329 -12 39 65 0 28 chr4 201655077 201655184 -673163 + AT_rich Low_complexity Low_complexity 1 104 0 7181 133 17 6 chr4 201655184 201656293 -672054 + THE1B-int LTR MaLR 460 1580 0 1984 151 33 36 chr4 201656293 201656658 -671689 + THE1B LTR MaLR 1 364 0 4333 166 22 39 chr4 201656658 201657005 -671342 - L1PA13 LINE L1 -4417 2380 2028 2564 37 3 0 chr4 201657005 201657300 -671047 - AluYa5 SINE Alu -15 296 1 4333 166 22 39 chr4 201657300 201657894 -670453 - L1PA13 LINE L1 -4769 2028 1441 1404 220 82 14 chr4 201657896 201658339 -670008 - LTR22 LTR ERVK 0 458 16 512 301 25 39 chr4 201658352 201658555 -669792 + LTR4 LTR ERV1 1 200 -396 950 246 20 65 chr4 201658699 201658992 -669355 + LTR4 LTR ERV1 317 596 0 741 343 72 16 chr4 201659046 201659422 -668925 - L1PA13 LINE L1 -5514 1273 877 283 270 48 0 chr4 201659439 201659502 -668845 - L1PA13 LINE L1 -5970 817 752 1177 267 72 49 chr4 201660566 201661139 -667208 - L1ME2 LINE L1 -19 6145 5560 21 0 0 0 chr4 201661139 201661160 -667187 + AT_rich Low_complexity Low_complexity 1 21 0 1244 274 55 35 chr4 201661296 201661843 -666504 - L1ME2 LINE L1 -127 6106 5549 1134 275 79 54 chr4 201661899 201662510 -665837 - L1ME2 LINE L1 -5603 793 168 1555 291 102 25 chr4 201662590 201663812 -664535 + Charlie2a DNA MER1_type 317 1631 -1231 30 27 0 0 chr4 201664266 201664303 -664044 + AT_rich Low_complexity Low_complexity 1 37 0 1738 156 0 0 chr4 201664355 201664611 -663736 + AluSg SINE Alu 35 290 -20 447 352 42 42 chr4 201664991 201665485 -662862 + L1MEd LINE L1 843 1336 -5036 246 269 54 0 chr4 201665545 201665638 -662709 + L1MEd LINE L1 1295 1392 -4992 251 250 0 0 chr4 201665682 201665738 -662609 + GA-rich Low_complexity Low_complexity 1 56 0 2541 289 42 41 chr4 201665961 201667180 -661167 + L1PA13 LINE L1 1 1218 -5569 288 0 0 0 chr4 201667180 201667212 -661135 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2541 289 42 41 chr4 201667212 201667515 -660832 + L1PA13 LINE L1 1218 1519 -5268 1752 138 24 34 chr4 201667515 201667798 -660549 + AluSx SINE Alu 2 283 -29 468 0 0 0 chr4 201667798 201667850 -660497 + (CA)n Simple_repeat Simple_repeat 1 52 0 1752 138 24 34 chr4 201667850 201667862 -660485 + AluSx SINE Alu 283 294 -18 2541 289 42 41 chr4 201667862 201668018 -660329 + L1PA13 LINE L1 1519 2075 -4712 1941 162 32 19 chr4 201668029 201668399 -659948 - THE1C LTR MaLR 0 375 1 5268 140 9 6 chr4 201668399 201669192 -659155 - THE1C-int LTR MaLR 0 1580 786 2148 210 45 0 chr4 201669193 201669679 -658668 + L1 LINE L1 4542 5049 -1097 7040 270 20 11 chr4 201669705 201671966 -656381 - L1PA12 LINE L1 -2324 5260 2995 1796 115 91 40 chr4 201671966 201672262 -656085 - AluY SINE Alu 0 311 1 7040 270 20 11 chr4 201672262 201674006 -654341 - L1PA12 LINE L1 -4589 2995 1267 1977 173 16 28 chr4 201674010 201674374 -653973 - THE1B LTR MaLR -4 360 1 11217 111 8 3 chr4 201674379 201675945 -652402 - THE1B-int LTR MaLR -5 1575 1 1973 168 25 25 chr4 201675945 201676309 -652038 - THE1B LTR MaLR 0 364 1 1505 320 34 65 chr4 201676309 201677565 -650782 - L1PA12 LINE L1 -5819 1762 8 689 236 51 6 chr4 201677573 201677730 -650617 - MLT1A2 LTR MaLR -54 320 157 2025 129 0 26 chr4 201677855 201678165 -650182 + AluY SINE Alu 1 302 -9 21 57 0 0 chr4 201678195 201678230 -650117 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr4 201678263 201678307 -650040 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr4 201678346 201678375 -649972 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr4 201678419 201678444 -649903 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr4 201678461 201678499 -649848 + AT_rich Low_complexity Low_complexity 1 38 0 32 26 0 0 chr4 201678557 201678596 -649751 + AT_rich Low_complexity Low_complexity 1 39 0 1096 63 7 0 chr4 201678764 201678907 -649440 - L1PA6 LINE L1 -6 6148 6005 25 51 0 0 chr4 201679001 201679040 -649307 + AT_rich Low_complexity Low_complexity 1 39 0 30 0 0 0 chr4 201679306 201679336 -649011 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr4 201679849 201679874 -648473 + AT_rich Low_complexity Low_complexity 1 25 0 737 246 121 14 chr4 201680589 201680804 -647543 + MER8 DNA MER2_type 2 239 0 13855 156 25 5 chr4 201681477 201681801 -646546 - Tigger1 DNA MER2_type -1 2417 2101 2029 138 10 0 chr4 201681801 201682105 -646242 - AluSx SINE Alu -3 309 3 13855 156 25 5 chr4 201682105 201684127 -644220 - Tigger1 DNA MER2_type -317 2101 24 283 318 143 63 chr4 201684899 201685185 -643162 + L2 LINE L2 3001 3309 -4 231 240 0 0 chr4 201686449 201686499 -641848 - L2 LINE L2 -9 3263 3214 236 30 30 0 chr4 201686641 201686674 -641673 + (CA)n Simple_repeat Simple_repeat 2 35 0 2131 108 0 0 chr4 201686827 201687104 -641243 - AluY SINE Alu -21 290 14 541 323 102 43 chr4 201687167 201687656 -640691 + LTR33A LTR ERVL 2 519 -4 236 279 25 98 chr4 201687856 201688060 -640287 - L2 LINE L2 -6 3307 3119 654 334 125 16 chr4 201688168 201688608 -639739 - L2 LINE L2 -353 2961 2474 1681 215 108 9 chr4 201690674 201691098 -637249 + MER31B LTR ERV1 1 466 0 1873 148 7 13 chr4 201691241 201691546 -636801 + AluSx SINE Alu 1 303 -9 30 0 0 0 chr4 201691592 201691622 -636725 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr4 201691907 201691933 -636414 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr4 201692848 201692871 -635476 + AT_rich Low_complexity Low_complexity 1 23 0 30 69 0 0 chr4 201693247 201693305 -635042 + AT_rich Low_complexity Low_complexity 1 58 0 214 205 0 0 chr4 201693702 201693741 -634606 + T-rich Low_complexity Low_complexity 1 39 0 212 143 0 0 chr4 201694721 201694756 -633591 + (TG)n Simple_repeat Simple_repeat 2 36 0 29 28 0 0 chr4 201695236 201695272 -633075 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 201695428 201695450 -632897 + AT_rich Low_complexity Low_complexity 1 22 0 1678 187 33 0 chr4 201695548 201695848 -632499 - 7SLRNA srpRNA srpRNA -1 319 10 2388 155 21 16 chr4 201696079 201696505 -631842 - MSTA LTR MaLR 0 428 1 7633 198 67 10 chr4 201696505 201698067 -630280 - MSTA-int LTR MaLR 0 1651 1 2583 131 24 5 chr4 201698067 201698487 -629860 - MSTA LTR MaLR 0 428 1 22 35 0 0 chr4 201699575 201699604 -628743 + AT_rich Low_complexity Low_complexity 1 29 0 1758 151 0 4 chr4 201700597 201700869 -627478 - AluSx SINE Alu -7 305 35 23 68 0 0 chr4 201700953 201700997 -627350 + AT_rich Low_complexity Low_complexity 1 44 0 523 0 30 0 chr4 201701656 201701723 -626624 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 25 31 0 0 chr4 201702618 201702650 -625697 + AT_rich Low_complexity Low_complexity 1 32 0 50 31 0 0 chr4 201703293 201703357 -624990 + AT_rich Low_complexity Low_complexity 1 64 0 1122 262 85 46 chr4 201703740 201704083 -624264 + L1M4 LINE L1 2948 3276 -2870 2095 133 0 0 chr4 201704083 201704391 -623956 + AluSx SINE Alu 1 308 -4 1122 262 85 46 chr4 201704391 201704832 -623515 + L1M4 LINE L1 3276 3763 -2383 211 205 0 0 chr4 201704837 201704876 -623471 + (TG)n Simple_repeat Simple_repeat 2 40 0 257 294 33 0 chr4 201705170 201705262 -623085 + CT-rich Low_complexity Low_complexity 6 100 0 1525 245 48 57 chr4 201705276 201705925 -622422 - L1M4 LINE L1 -1909 4237 3595 560 241 123 30 chr4 201707352 201707555 -620792 + MER77 LTR ERV1 4 225 -380 1229 280 56 33 chr4 201707575 201708004 -620343 + MER77 LTR ERV1 161 599 -6 387 319 86 23 chr4 201708112 201708413 -619934 - L1MEc LINE L1 -4641 1755 1436 273 355 82 18 chr4 201708447 201708667 -619680 - L2 LINE L2 -4 3309 3076 283 335 71 37 chr4 201709036 201709361 -618986 - L1MEc LINE L1 -5284 921 586 1525 95 18 0 chr4 201709372 201709593 -618754 - L1PA8 LINE L1 0 6172 5948 4424 79 15 0 chr4 201709593 201710191 -618156 - L1PA7 LINE L1 -42 6112 5506 2238 92 0 7 chr4 201710469 201710774 -617573 + AluY SINE Alu 1 303 -8 25 0 0 0 chr4 201712042 201712067 -616280 + AT_rich Low_complexity Low_complexity 1 25 0 1020 271 77 6 chr4 201712444 201712784 -615563 + MLT1A1 LTR MaLR 1 364 -1 192 281 79 22 chr4 201713859 201713948 -614399 - L2 LINE L2 -4 3268 3175 1334 204 60 27 chr4 201714396 201714729 -613618 - MER2 DNA MER2_type 0 344 1 569 216 175 6 chr4 201715076 201715247 -613100 + MLT1A1 LTR MaLR 1 200 -165 445 116 3 5 chr4 201715241 201715318 -613029 + MLT1A1 LTR MaLR 289 390 0 * 835 342 13 10 chr4 201715354 201715743 -612604 + L1MEc LINE L1 411 800 -5596 324 266 116 23 chr4 201715822 201716081 -612266 + L1MEc LINE L1 972 1254 -5142 287 287 6 43 chr4 201716198 201716362 -611985 + HAL1 LINE L1 1389 1546 -961 382 315 16 71 chr4 201716472 201716656 -611691 + MER96 DNA MER1_type 2 175 0 298 268 0 0 chr4 201716780 201716862 -611485 + L1MEc LINE L1 1985 2066 -4330 379 241 146 30 chr4 201716899 201717194 -611153 + L1MEc LINE L1 2047 2375 -4021 335 272 24 16 chr4 201717207 201717332 -611015 + L1MEc LINE L1 2370 2495 -3720 543 160 84 15 chr4 201717350 201717481 -610866 + L1MA4 LINE L1 6160 6299 -1 1070 207 38 48 chr4 201717592 201717938 -610409 + MLT1A1 LTR MaLR 1 302 -63 28 0 0 0 chr4 201717950 201717978 -610369 + AT_rich Low_complexity Low_complexity 1 28 0 648 275 76 27 chr4 201718038 201718602 -609745 + L1MEc LINE L1 3189 3780 -2435 307 284 95 27 chr4 201718609 201718831 -609516 + L1MEc LINE L1 3952 4188 -2027 592 259 20 10 chr4 201718833 201719034 -609313 + L1MEc LINE L1 4525 4727 -1488 30 27 0 0 chr4 201719036 201719073 -609274 + AT_rich Low_complexity Low_complexity 1 37 0 1256 293 74 37 chr4 201719099 201720334 -608013 + L1M4 LINE L1 2269 3548 -2598 1991 170 11 16 chr4 201720714 201721091 -607256 - THE1C LTR MaLR 0 375 1 250 324 81 36 chr4 201721092 201721339 -607008 - L2 LINE L2 -123 3190 2933 1804 167 66 20 chr4 201721357 201721705 -606642 - THE1B LTR MaLR 0 364 1 448 313 98 44 chr4 201721708 201721983 -606364 - L1MEc LINE L1 -6015 381 92 11285 218 27 23 chr4 201722166 201725286 -603061 - L1P5 LINE L1 -720 5434 2310 183 129 0 0 chr4 201725569 201725600 -602747 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 29 94 0 0 chr4 201726436 201726521 -601826 + AT_rich Low_complexity Low_complexity 1 85 0 22 56 0 0 chr4 201727732 201727768 -600579 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr4 201727848 201727874 -600473 + AT_rich Low_complexity Low_complexity 1 26 0 29 47 0 0 chr4 201728259 201728302 -600045 + AT_rich Low_complexity Low_complexity 1 43 0 22 70 0 0 chr4 201728549 201728592 -599755 + AT_rich Low_complexity Low_complexity 1 43 0 678 208 69 23 chr4 201729946 201730119 -598228 - MER74A LTR ERVL 0 558 378 392 259 33 41 chr4 201730265 201730508 -597839 - L1MEc LINE L1 -4122 2274 2034 286 275 93 42 chr4 201730526 201730832 -597515 + L1M4 LINE L1 4050 4378 -1768 1087 262 31 36 chr4 201730833 201731249 -597098 + L1MC4 LINE L1 6896 7309 -733 852 275 71 41 chr4 201731310 201731721 -596626 + L1MC4 LINE L1 7299 7721 -321 230 258 0 0 chr4 201732019 201732081 -596266 + T-rich Low_complexity Low_complexity 1 62 0 215 347 28 0 chr4 201733441 201733513 -594834 - L2 LINE L2 -47 3266 3193 2484 157 39 0 chr4 201733819 201734232 -594115 - MER57B LTR ERV1 -5 429 1 846 312 35 23 chr4 201734534 201734880 -593467 - LTR16B LTR ERVL -6 458 109 817 218 0 23 chr4 201734887 201735061 -593286 + MER4D LTR ERV1 1 170 -733 458 302 70 35 chr4 201735573 201735928 -592419 - L1ME LINE L1 -348 5822 5458 25 31 0 0 chr4 201737082 201737114 -591233 + AT_rich Low_complexity Low_complexity 1 32 0 1754 260 72 51 chr4 201737253 201738159 -590188 - L1ME1 LINE L1 -5 6161 5243 1789 238 48 39 chr4 201738159 201738618 -589729 - MER77 LTR ERV1 0 605 143 451 281 92 20 chr4 201738586 201738739 -589608 - MER77 LTR ERV1 -380 225 62 * 21 0 0 0 chr4 201738822 201738843 -589504 + AT_rich Low_complexity Low_complexity 1 21 0 8915 86 12 3 chr4 201738843 201740695 -587652 + L1PA7 LINE L1 4089 5961 -193 599 301 102 8 chr4 201741264 201741500 -586847 - MIR SINE MIR 0 262 5 323 329 74 9 chr4 201741732 201741948 -586399 - L1ME LINE L1 -582 5539 5310 223 304 18 0 chr4 201741955 201742011 -586336 + L2 LINE L2 3004 3060 -212 48 43 0 0 chr4 201742217 201742286 -586061 + AT_rich Low_complexity Low_complexity 1 69 0 27 0 0 0 chr4 201742582 201742609 -585738 + AT_rich Low_complexity Low_complexity 1 27 0 1214 172 5 0 chr4 201742636 201742828 -585519 + AluJb SINE Alu 1 193 -119 1669 226 128 75 chr4 201742842 201743744 -584603 + LTR1B LTR ERV1 1 1016 -4 608 180 0 0 chr4 201743746 201743857 -584490 + AluJb SINE Alu 188 298 -14 21 0 0 0 chr4 201743857 201743878 -584469 + AT_rich Low_complexity Low_complexity 1 21 0 292 258 108 0 chr4 201744553 201744673 -583674 - MER103 DNA DNA -3 163 31 1022 184 56 139 chr4 201744675 201745071 -583276 + MLT1A1 LTR MaLR 3 365 0 249 139 0 0 chr4 201745670 201745713 -582634 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 36 0 0 chr4 201745713 201745741 -582606 + AT_rich Low_complexity Low_complexity 1 28 0 1405 261 53 44 chr4 201746894 201747466 -580881 - MLT1G LTR MaLR 0 577 13 22 70 0 0 chr4 201747748 201747791 -580556 + AT_rich Low_complexity Low_complexity 1 43 0 32 101 0 0 chr4 201747981 201748090 -580257 + AT_rich Low_complexity Low_complexity 1 109 0 22 0 0 0 chr4 201748532 201748554 -579793 + AT_rich Low_complexity Low_complexity 1 22 0 298 334 87 25 chr4 201749382 201749738 -578609 - L1ME2 LINE L1 -288 5876 5499 3019 149 55 49 chr4 201749891 201750527 -577820 + MER4D LTR ERV1 264 903 0 249 284 158 56 chr4 201751293 201751578 -576769 + MLT1J2 LTR MaLR 137 450 0 384 301 119 11 chr4 201753292 201753468 -574879 + MLT1J LTR MaLR 38 232 -279 2791 3 0 0 chr4 201753914 201754218 -574129 - AluYa5 SINE Alu -7 304 1 530 289 40 32 chr4 201754344 201754621 -573726 - L1ME3 LINE L1 0 6162 5884 1639 199 3 3 chr4 201755105 201755411 -572936 - AluJb SINE Alu -6 306 1 198 91 61 30 chr4 201755440 201755506 -572841 + (TA)n Simple_repeat Simple_repeat 2 69 0 2642 184 48 45 chr4 201755994 201756598 -571749 + L1MA6 LINE L1 5694 6299 -1 23 0 0 0 chr4 201757556 201757579 -570768 + AT_rich Low_complexity Low_complexity 1 23 0 506 172 11 0 chr4 201758300 201758387 -569960 - Charlie3 DNA MER1_type -10 2700 2613 10356 175 42 54 chr4 201758506 201760704 -567643 - MER61D-int LTR ERV1 -305 4912 2689 2046 139 27 33 chr4 201760704 201761070 -567277 - THE1B LTR MaLR 0 364 1 10356 175 42 54 chr4 201761070 201762521 -565826 - MER61D-int LTR ERV1 -2528 2689 1243 2225 70 3 51 chr4 201762521 201762833 -565514 - AluY SINE Alu -14 297 1 10356 175 42 54 chr4 201762833 201763461 -564886 - MER61D-int LTR ERV1 -3974 1243 609 833 182 70 142 chr4 201763460 201763969 -564378 - MER61D-int LTR ERV1 -2596 492 195 * 2679 153 5 2 chr4 201763969 201764369 -563978 - MER61D LTR ERV1 -100 401 1 22 80 0 0 chr4 201765097 201765147 -563200 + AT_rich Low_complexity Low_complexity 1 50 0 492 231 0 0 chr4 201765573 201765677 -562670 - FRAM SINE Alu -10 166 63 270 175 48 16 chr4 201765677 201765740 -562607 + LTR68 LTR ERV1 23 87 -653 535 225 23 16 chr4 201765927 201766056 -562291 + LTR68 LTR ERV1 309 438 -302 4584 195 42 147 chr4 201766170 201769738 -558609 - L1PBb LINE L1 -3814 3048 3 29 70 0 0 chr4 201769863 201769920 -558427 + AT_rich Low_complexity Low_complexity 1 57 0 208 211 0 0 chr4 201771620 201771658 -556689 + GA-rich Low_complexity Low_complexity 3 40 0 545 238 81 28 chr4 201772025 201772273 -556074 + LTR37B LTR ERV1 208 468 0 517 330 64 70 chr4 201772420 201772713 -555634 + L1MEd LINE L1 463 753 -5366 2037 132 3 3 chr4 201772713 201773009 -555338 + AluSq SINE Alu 2 297 -16 517 330 64 70 chr4 201773009 201773218 -555129 + L1MEd LINE L1 753 962 -5157 27 0 0 0 chr4 201773224 201773251 -555096 + AT_rich Low_complexity Low_complexity 1 27 0 759 298 298 18 chr4 201773846 201773965 -554382 + L2 LINE L2 1864 1948 -1366 260 49 49 0 chr4 201773965 201774006 -554341 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 759 298 298 18 chr4 201774006 201774436 -553911 + L2 LINE L2 1948 2567 -747 213 366 89 19 chr4 201774509 201774722 -553625 + L2 LINE L2 2996 3223 -90 440 44 0 59 chr4 201774846 201774914 -553433 + L1PA7 LINE L1 6090 6153 -1 340 316 40 23 chr4 201774915 201775089 -553258 - L1M4 LINE L1 -979 5167 4991 418 269 32 6 chr4 201775165 201775321 -553026 - L1M4 LINE L1 -1232 4914 4755 189 74 0 0 chr4 201775953 201775980 -552367 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 4171 97 25 0 chr4 201775980 201776577 -551770 - L1PA8 LINE L1 -28 6144 5533 1697 161 56 0 chr4 201777434 201777609 -550738 - AluSx SINE Alu -10 302 103 343 0 43 0 chr4 201777609 201777656 -550691 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 1697 161 56 0 chr4 201777656 201777766 -550581 - AluSx SINE Alu -209 103 1 330 287 11 0 chr4 201777773 201777867 -550480 - MIR SINE MIR -65 197 103 391 263 11 0 chr4 201778345 201778440 -549907 - Zaphod DNA AcHobo -1 4030 3935 183 42 0 0 chr4 201778938 201778962 -549385 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1339 228 21 106 chr4 201779179 201779210 -549137 + MLT1D LTR MaLR 1 33 -472 2091 147 37 6 chr4 201779210 201779563 -548784 + THE1B LTR MaLR 1 364 0 1339 228 21 106 chr4 201779563 201779816 -548531 + MLT1D LTR MaLR 33 224 -281 1122 150 10 5 chr4 201779816 201780023 -548324 - L1MA6 LINE L1 -6 6294 6087 1339 228 21 106 chr4 201780023 201780258 -548089 + MLT1D LTR MaLR 224 477 -28 286 340 137 32 chr4 201780868 201781300 -547047 - L2 LINE L2 -2248 1066 590 673 247 29 23 chr4 201783423 201783597 -544750 - MER45A DNA AcHobo -3 175 1 24 67 0 0 chr4 201783798 201783843 -544504 + AT_rich Low_complexity Low_complexity 1 45 0 26 82 0 0 chr4 201783902 201783963 -544384 + AT_rich Low_complexity Low_complexity 1 61 0 983 336 33 7 chr4 201784916 201785339 -543008 + LTR16B LTR ERVL 22 455 -9 213 39 0 0 chr4 201785952 201785978 -542369 + (T)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr4 201786740 201786764 -541583 + AT_rich Low_complexity Low_complexity 1 24 0 287 275 88 38 chr4 201787290 201787450 -540897 - L1MC5 LINE L1 -97 7864 7697 2434 70 0 0 chr4 201787986 201788286 -540061 - AluY SINE Alu -11 300 1 341 317 10 0 chr4 201789275 201789379 -538968 - MIR SINE MIR -48 214 110 194 276 69 0 chr4 201789496 201789554 -538793 - L3 LINE CR1 -584 993 932 706 290 54 98 chr4 201789741 201790453 -537894 - L2 LINE L2 -247 3066 2310 790 308 141 17 chr4 201790453 201790914 -537433 - LTR33A LTR ERVL -6 517 30 2145 293 106 48 chr4 201790942 201791181 -537166 - L2 LINE L2 -995 2319 2095 528 45 0 0 chr4 201791181 201791248 -537099 + (GA)n Simple_repeat Simple_repeat 2 68 0 2145 293 106 48 chr4 201791248 201791762 -536585 - L2 LINE L2 -1219 2095 1612 732 239 17 65 chr4 201791762 201791992 -536355 + MER20 DNA MER1_type 1 219 0 2145 293 106 48 chr4 201791992 201792086 -536261 - L2 LINE L2 -1702 1612 1525 219 69 0 0 chr4 201792086 201792115 -536232 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 2145 293 106 48 chr4 201792115 201792421 -535926 - L2 LINE L2 -1789 1525 1098 628 252 0 0 chr4 201795647 201795774 -532573 - MER45A DNA AcHobo 0 178 52 1357 241 109 16 chr4 201796295 201796718 -531629 - MLT1C LTR MaLR 0 467 6 441 179 13 0 chr4 201796985 201797063 -531284 - MER45A DNA AcHobo -1 177 99 540 71 12 0 chr4 201797457 201797542 -530805 + L1PA13 LINE L1 6078 6163 0 22 0 0 0 chr4 201798204 201798226 -530121 + AT_rich Low_complexity Low_complexity 1 22 0 2032 129 10 7 chr4 201798842 201799123 -529224 + AluSq SINE Alu 2 496 0 211 86 0 57 chr4 201799123 201799336 -529011 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 1998 156 39 25 chr4 201800798 201801157 -527190 - THE1B LTR MaLR 0 364 1 10718 109 29 5 chr4 201801157 201802701 -525646 - THE1B-int LTR MaLR 0 1580 1 2012 170 19 22 chr4 201802701 201803066 -525281 - THE1B LTR MaLR 0 364 1 260 209 56 93 chr4 201803166 201803309 -525038 - MER69 DNA AcHobo -7 2519 20 1012 247 5 0 chr4 201803321 201803544 -524803 - MER58A DNA MER1_type 0 224 1 196 448 26 0 chr4 201855490 201855606 -472741 + L2 LINE L2 2573 2691 -623 21 0 0 0 chr4 201855669 201855690 -472657 + AT_rich Low_complexity Low_complexity 1 21 0 219 146 0 0 chr4 201855692 201855733 -472614 + (T)n Simple_repeat Simple_repeat 1 41 0 533 260 132 35 chr4 201856270 201856521 -471826 - L1MC4a LINE L1 0 7808 7527 2258 85 3 13 chr4 201856521 201856827 -471520 + AluY SINE Alu 3 305 -6 533 260 132 35 chr4 201856827 201856880 -471467 - L1MC4a LINE L1 -281 7527 7481 854 272 69 36 chr4 201857002 201857609 -470738 - L1M4 LINE L1 -3216 2930 2304 30 27 0 0 chr4 201857670 201857707 -470640 + AT_rich Low_complexity Low_complexity 1 37 0 592 259 20 10 chr4 201857709 201857910 -470437 - L1M4 LINE L1 -1488 4658 4456 295 287 94 27 chr4 201857912 201858135 -470212 - L1M4 LINE L1 -2027 4119 3882 652 275 76 27 chr4 201858141 201858705 -469642 - L1M4 LINE L1 -2435 3711 3120 28 0 0 0 chr4 201858765 201858793 -469554 + AT_rich Low_complexity Low_complexity 1 28 0 1084 215 56 70 chr4 201858805 201859151 -469196 - MLT1A1 LTR MaLR -63 302 1 376 159 80 23 chr4 201859262 201859350 -468997 - L1MA4 LINE L1 -1 6299 6207 8893 90 11 4 chr4 201859450 201860939 -467408 - L1P3 LINE L1 -562 5592 4089 21 0 0 0 chr4 201860939 201860960 -467387 + AT_rich Low_complexity Low_complexity 1 21 0 451 281 92 20 chr4 201861043 201861196 -467151 + MER77 LTR ERV1 62 225 -380 * 1785 240 48 39 chr4 201861164 201861623 -466724 + MER77 LTR ERV1 143 605 0 1823 259 73 50 chr4 201861623 201862528 -465819 + L1ME1 LINE L1 5243 6161 -5 24 32 0 0 chr4 201862668 201862699 -465648 + AT_rich Low_complexity Low_complexity 1 31 0 28 50 0 17 chr4 201862931 201862955 -465392 + AT_rich Low_complexity Low_complexity 1 24 -35 2818 16 0 0 chr4 201862955 201863272 -465075 - AluYb8 SINE Alu -1 317 1 28 50 0 17 chr4 201863272 201863307 -465040 + AT_rich Low_complexity Low_complexity 24 59 0 453 298 72 37 chr4 201864190 201864545 -463802 + L1ME LINE L1 5458 5822 -348 253 314 166 29 chr4 201865093 201865268 -463079 - MIR SINE MIR 0 262 64 183 129 0 0 chr4 201865410 201865441 -462906 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 29 94 0 0 chr4 201866277 201866362 -461985 + AT_rich Low_complexity Low_complexity 1 85 0 22 56 0 0 chr4 201867573 201867609 -460738 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr4 201867689 201867715 -460632 + AT_rich Low_complexity Low_complexity 1 26 0 29 47 0 0 chr4 201868100 201868143 -460204 + AT_rich Low_complexity Low_complexity 1 43 0 1098 159 6 6 chr4 201869311 201869487 -458860 + AluSq SINE Alu 122 297 -16 27 29 0 0 chr4 201869550 201869584 -458763 + AT_rich Low_complexity Low_complexity 1 34 0 761 296 298 18 chr4 201870323 201870442 -457905 + L2 LINE L2 1864 1948 -1366 260 49 49 0 chr4 201870442 201870483 -457864 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 761 296 298 18 chr4 201870483 201870913 -457434 + L2 LINE L2 1948 2567 -747 218 366 89 19 chr4 201870986 201871199 -457148 + L2 LINE L2 2996 3223 -90 980 258 106 40 chr4 201871291 201871686 -456661 + MLT1C LTR MaLR 47 467 0 26 50 0 0 chr4 201871968 201872008 -456339 + AT_rich Low_complexity Low_complexity 1 40 0 286 331 90 28 chr4 201872071 201872427 -455920 + L1ME LINE L1 5499 5876 -288 21 0 0 0 chr4 201873255 201873276 -455071 + AT_rich Low_complexity Low_complexity 1 21 0 33 100 0 0 chr4 201873718 201873828 -454519 + AT_rich Low_complexity Low_complexity 1 110 0 22 70 0 0 chr4 201874018 201874061 -454286 + AT_rich Low_complexity Low_complexity 1 43 0 1405 261 53 44 chr4 201874343 201874915 -453432 + MLT1G LTR MaLR 13 567 0 213 154 0 0 chr4 201876095 201876134 -452213 + (TG)n Simple_repeat Simple_repeat 2 40 0 1024 192 56 139 chr4 201876733 201877129 -451218 - MLT1A1 LTR MaLR 0 365 3 292 258 108 0 chr4 201877131 201877251 -451096 + MER103 DNA DNA 31 163 -3 21 0 0 0 chr4 201877926 201877947 -450400 + AT_rich Low_complexity Low_complexity 1 21 0 552 184 18 0 chr4 201877947 201878056 -450291 - AluJb SINE Alu -14 298 188 1639 228 128 75 chr4 201878058 201878960 -449387 - LTR1B LTR ERV1 -4 1016 1 1200 177 5 0 chr4 201878974 201879166 -449181 - AluJb SINE Alu -119 193 1 27 0 0 0 chr4 201879193 201879220 -449127 + AT_rich Low_complexity Low_complexity 1 27 0 48 43 0 0 chr4 201879516 201879585 -448762 + AT_rich Low_complexity Low_complexity 1 69 0 223 304 18 0 chr4 201879791 201879847 -448500 - L2 LINE L2 -212 3060 3004 307 333 74 9 chr4 201879854 201880070 -448277 + L1ME LINE L1 5310 5539 -582 599 301 102 8 chr4 201880302 201880538 -447809 + MIR SINE MIR 5 262 0 1700 221 72 10 chr4 201881458 201881860 -446487 - MER74A LTR ERVL 0 558 132 418 333 7 0 chr4 201882257 201882392 -445955 - L1ME LINE L1 -529 5641 5506 2262 110 0 0 chr4 201882457 201882758 -445589 + AluSx SINE Alu 1 301 -11 23 33 0 0 chr4 201882817 201882847 -445500 + AT_rich Low_complexity Low_complexity 1 30 0 772 194 11 52 chr4 201883653 201883844 -444503 + MLT1A2 LTR MaLR 6 188 -186 517 249 50 28 chr4 201883878 201884059 -444288 + MLT1A2 LTR MaLR 186 370 -4 8957 208 28 14 chr4 201884859 201885363 -442984 + L1PA16 LINE L1 2983 3478 -2688 216 0 0 0 chr4 201885363 201885387 -442960 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 8957 208 28 14 chr4 201885387 201885802 -442545 + L1PA16 LINE L1 3478 3886 -2280 2203 48 44 0 chr4 201885802 201886116 -442231 + AluY SINE Alu 1 326 0 8957 208 28 14 chr4 201886116 201888322 -440025 + L1PA16 LINE L1 3886 6157 -9 1553 275 49 32 chr4 201888381 201888899 -439448 - MER74A LTR ERVL -30 592 1 1892 233 7 15 chr4 201888899 201889302 -439045 + MER89-int LTR ERV1 6401 6800 -1 1551 232 30 24 chr4 201889306 201889736 -438611 + MER89 LTR ERV1 28 559 0 607 282 52 16 chr4 201889736 201890041 -438306 + L1ME2 LINE L1 4006 4321 -1825 1166 201 5 5 chr4 201890042 201890256 -438091 + MER46A DNA MER2_type 1 214 -22 204 346 26 0 chr4 201890283 201890361 -437986 - L2 LINE L2 -9 3304 3225 519 213 7 73 chr4 201890372 201890522 -437825 - MER67A LTR ERV1 0 543 404 1375 199 7 0 chr4 201890522 201890794 -437553 - L1PA16 LINE L1 -16 6150 5877 420 297 54 40 chr4 201890831 201891255 -437092 + L1ME2 LINE L1 4326 4755 -1391 21 57 0 0 chr4 201891375 201891410 -436937 + AT_rich Low_complexity Low_complexity 1 35 0 621 206 48 8 chr4 201891419 201891545 -436802 - FRAM SINE Alu -45 131 1 352 286 12 23 chr4 201891707 201891878 -436469 + L1ME2 LINE L1 5079 5247 -899 1304 341 60 68 chr4 201891899 201892778 -435569 + L1ME2 LINE L1 5282 6153 -11 22 0 0 0 chr4 201893108 201893130 -435217 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr4 201893528 201893563 -434784 + AT_rich Low_complexity Low_complexity 1 35 0 315 301 8 16 chr4 201894758 201894881 -433466 - HAL1 LINE L1 -1463 1044 923 23 33 0 0 chr4 201895405 201895435 -432912 + AT_rich Low_complexity Low_complexity 1 30 0 47 19 0 0 chr4 201895504 201895558 -432789 + AT_rich Low_complexity Low_complexity 1 54 0 626 338 44 15 chr4 201895824 201896235 -432112 - L1ME3A LINE L1 -208 5962 5540 258 299 47 16 chr4 201896425 201896552 -431795 + L1ME LINE L1 5656 5786 -376 1074 212 77 43 chr4 201897484 201897809 -430538 + MER58B DNA MER1_type 1 336 -5 248 216 0 0 chr4 201897875 201897926 -430421 + MER58B DNA MER1_type 291 341 0 2376 74 7 0 chr4 201897975 201898273 -430074 + AluSp SINE Alu 1 300 -13 2065 123 13 0 chr4 201898866 201899168 -429179 + AluSp SINE Alu 1 306 -7 200 393 25 33 chr4 201899331 201899453 -428894 + L2 LINE L2 3149 3269 -3 22 0 0 0 chr4 201901274 201901296 -427051 + AT_rich Low_complexity Low_complexity 1 22 0 2276 172 17 27 chr4 201901707 201902190 -426157 - L1MA5 LINE L1 0 6300 5823 218 325 61 26 chr4 201902547 201902661 -425686 + L2 LINE L2 2147 2264 -1050 1015 247 5 0 chr4 201903352 201903575 -424772 + MER58A DNA MER1_type 1 224 0 294 232 127 70 chr4 201903587 201903729 -424618 + MER69A DNA AcHobo 20 169 -8 1993 170 19 22 chr4 201903830 201904195 -424152 + THE1B LTR MaLR 1 364 0 10607 108 29 5 chr4 201904195 201905739 -422608 + THE1B-int LTR MaLR 1 1580 0 1996 153 39 25 chr4 201905739 201906098 -422249 + THE1B LTR MaLR 1 364 0 1350 27 0 32 chr4 201907569 201907755 -420592 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2046 135 10 6 chr4 201907784 201908095 -420252 - AluSq SINE Alu 0 313 2 22 0 0 0 chr4 201908711 201908733 -419614 + AT_rich Low_complexity Low_complexity 1 22 0 529 82 12 0 chr4 201909395 201909480 -418867 - L1PA13 LINE L1 0 6163 6078 441 179 13 0 chr4 201909874 201909952 -418395 + MER45A DNA AcHobo 99 177 -1 1357 241 109 16 chr4 201910219 201910642 -417705 + MLT1C LTR MaLR 6 467 0 628 252 0 0 chr4 201911162 201911289 -417058 + MER45A DNA AcHobo 52 178 0 2094 295 105 49 chr4 201914509 201914816 -413531 + L2 LINE L2 1098 1386 -1928 219 69 0 0 chr4 201914816 201914845 -413502 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 2094 295 105 49 chr4 201914845 201914939 -413408 + L2 LINE L2 1386 1473 -1841 733 239 17 65 chr4 201914939 201915169 -413178 - MER20 DNA MER1_type 0 219 1 2094 295 105 49 chr4 201915169 201915683 -412664 + L2 LINE L2 1473 2095 -1219 456 51 0 0 chr4 201915683 201915742 -412605 + (TC)n Simple_repeat Simple_repeat 2 60 0 2094 295 105 49 chr4 201915742 201915981 -412366 + L2 LINE L2 2095 2319 -995 773 290 160 13 chr4 201916094 201916470 -411877 + LTR33A LTR ERVL 87 517 -6 692 290 54 98 chr4 201916470 201917182 -411165 + L2 LINE L2 2310 3066 -247 194 276 69 0 chr4 201917369 201917427 -410920 + L3 LINE CR1 932 993 -584 341 317 10 0 chr4 201917544 201917648 -410699 + MIR SINE MIR 110 214 -48 2411 74 0 0 chr4 201918636 201918935 -409412 + AluY SINE Alu 1 299 -12 287 275 88 38 chr4 201919471 201919631 -408716 + L1MC5 LINE L1 7697 7864 -97 24 0 0 0 chr4 201920157 201920181 -408166 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr4 201921191 201921214 -407133 + AT_rich Low_complexity Low_complexity 1 23 0 30 69 0 0 chr4 201921590 201921648 -406699 + AT_rich Low_complexity Low_complexity 1 58 0 214 205 0 0 chr4 201922045 201922084 -406263 + T-rich Low_complexity Low_complexity 1 39 0 212 143 0 0 chr4 201923064 201923099 -405248 + (TG)n Simple_repeat Simple_repeat 2 36 0 29 28 0 0 chr4 201923579 201923615 -404732 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 201923771 201923793 -404554 + AT_rich Low_complexity Low_complexity 1 22 0 1657 187 33 0 chr4 201923891 201924191 -404156 - 7SLRNA srpRNA srpRNA -1 319 10 2372 155 21 16 chr4 201924422 201924848 -403499 - MSTA LTR MaLR 0 428 1 7664 195 67 10 chr4 201924848 201926411 -401936 - MSTA-int LTR MaLR 0 1651 1 2585 138 19 2 chr4 201926411 201926832 -401515 - MSTA LTR MaLR 0 428 1 22 35 0 0 chr4 201927920 201927949 -400398 + AT_rich Low_complexity Low_complexity 1 29 0 1722 154 0 4 chr4 201928944 201929216 -399131 - AluSx SINE Alu -7 305 35 23 68 0 0 chr4 201929300 201929344 -399003 + AT_rich Low_complexity Low_complexity 1 44 0 464 0 18 0 chr4 201930003 201930059 -398288 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 25 31 0 0 chr4 201930954 201930986 -397361 + AT_rich Low_complexity Low_complexity 1 32 0 50 31 0 0 chr4 201931630 201931694 -396653 + AT_rich Low_complexity Low_complexity 1 64 0 1096 264 85 46 chr4 201932077 201932420 -395927 + L1M4 LINE L1 2948 3276 -2870 2069 136 0 0 chr4 201932420 201932728 -395619 + AluSx SINE Alu 1 308 -4 1096 264 85 46 chr4 201932728 201933169 -395178 + L1M4 LINE L1 3276 3763 -2383 211 205 0 0 chr4 201933174 201933213 -395134 + (TG)n Simple_repeat Simple_repeat 2 40 0 257 294 33 0 chr4 201933508 201933600 -394747 + CT-rich Low_complexity Low_complexity 6 100 0 1539 249 51 55 chr4 201933614 201934282 -394065 - L1M4 LINE L1 -1909 4237 3573 560 241 123 30 chr4 201935690 201935893 -392454 + MER77 LTR ERV1 4 225 -380 1229 280 56 33 chr4 201935913 201936342 -392005 + MER77 LTR ERV1 161 599 -6 387 319 86 23 chr4 201936450 201936751 -391596 - L1MEc LINE L1 -4641 1755 1436 287 345 96 14 chr4 201936785 201937005 -391342 - L2 LINE L2 0 3313 3076 283 335 71 37 chr4 201937374 201937699 -390648 - L1MEc LINE L1 -5284 921 586 1548 86 18 0 chr4 201937710 201937931 -390416 - L1PA8 LINE L1 0 6172 5948 4424 79 15 0 chr4 201937931 201938529 -389818 - L1PA7 LINE L1 -42 6112 5506 2238 92 0 7 chr4 201938807 201939112 -389235 + AluY SINE Alu 1 303 -8 25 0 0 0 chr4 201940380 201940405 -387942 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr4 201940556 201940581 -387766 + AT_rich Low_complexity Low_complexity 1 25 0 1026 265 79 9 chr4 201940782 201941122 -387225 + MLT1A1 LTR MaLR 1 364 -1 192 281 79 22 chr4 201942197 201942286 -386061 - L2 LINE L2 -4 3268 3175 1306 207 60 27 chr4 201942734 201943067 -385280 - MER2 DNA MER2_type 0 344 1 196 389 0 0 chr4 201943337 201943409 -384938 + L2 LINE L2 2843 2914 -358 571 216 175 6 chr4 201943414 201943585 -384762 + MLT1A1 LTR MaLR 1 200 -165 445 116 3 5 chr4 201943579 201943656 -384691 + MLT1A1 LTR MaLR 289 390 0 * 835 342 13 10 chr4 201943692 201944081 -384266 + L1MEc LINE L1 411 800 -5596 321 266 116 23 chr4 201944160 201944419 -383928 + L1MEc LINE L1 972 1254 -5142 338 260 67 13 chr4 201944536 201944632 -383715 + HAL1 LINE L1 1389 1497 -1010 225 0 0 0 chr4 201944632 201944657 -383690 + (CA)n Simple_repeat Simple_repeat 2 26 0 338 260 67 13 chr4 201944657 201944710 -383637 + HAL1 LINE L1 1497 1546 -961 430 321 16 71 chr4 201944820 201945004 -383343 - MER96 DNA MER1_type? -1 174 1 319 256 0 0 chr4 201945128 201945210 -383137 + L1MEc LINE L1 1985 2066 -4330 362 262 65 52 chr4 201945247 201945495 -382852 + L1MEc LINE L1 2047 2297 -4099 285 284 0 0 chr4 201945555 201945643 -382704 + L1MEc LINE L1 2370 2457 -3758 222 37 0 0 chr4 201945918 201945945 -382402 + (A)n Simple_repeat Simple_repeat 1 27 0 983 336 33 7 chr4 201946563 201946986 -381361 - LTR16B LTR ERVL -9 455 22 26 82 0 0 chr4 201947938 201947999 -380348 + AT_rich Low_complexity Low_complexity 1 61 0 24 67 0 0 chr4 201948058 201948103 -380244 + AT_rich Low_complexity Low_complexity 1 45 0 700 241 29 23 chr4 201948304 201948478 -379869 + MER45A DNA AcHobo 1 175 -3 2592 30 3 0 chr4 201948647 201948948 -379399 + AluY SINE Alu 1 302 -9 278 342 142 33 chr4 201950916 201951346 -377001 + L2 LINE L2 590 1066 -2248 1330 228 21 106 chr4 201951958 201952193 -376154 - MLT1D LTR MaLR -28 477 224 1122 150 10 5 chr4 201952193 201952400 -375947 + L1MA6 LINE L1 6087 6294 -6 1330 228 21 106 chr4 201952400 201952653 -375694 - MLT1D LTR MaLR -281 224 33 2091 147 37 6 chr4 201952653 201953006 -375341 - THE1B LTR MaLR 0 364 1 1330 228 21 106 chr4 201953006 201953037 -375310 - MLT1D LTR MaLR -472 33 1 183 42 0 0 chr4 201953254 201953278 -375069 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 391 263 11 0 chr4 201953776 201953871 -374476 + Zaphod DNA AcHobo 3935 4030 -1 330 287 11 0 chr4 201954348 201954442 -373905 + MIR SINE MIR 103 197 -65 1711 157 56 0 chr4 201954449 201954559 -373788 + AluSx SINE Alu 1 103 -209 379 0 39 0 chr4 201954559 201954610 -373737 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 1711 157 56 0 chr4 201954610 201954785 -373562 + AluSx SINE Alu 103 302 -10 3301 110 22 138 chr4 201955642 201956360 -371987 + L1PA10 LINE L1 5533 6170 0 415 242 45 25 chr4 201956991 201957148 -371199 + L1M4 LINE L1 4755 4914 -1232 309 338 29 0 chr4 201957262 201957398 -370949 + L1M4 LINE L1 5028 5167 -979 3096 61 2 12 chr4 201957399 201957811 -370536 - L1PA7 LINE L1 -1 6153 5746 577 314 36 50 chr4 201957918 201958358 -369989 + L1M4 LINE L1 3118 3551 -2595 1991 170 11 16 chr4 201958736 201959113 -369234 - THE1C LTR MaLR 0 375 1 258 320 81 36 chr4 201959114 201959361 -368986 - L2 LINE L2 -123 3190 2933 1804 167 66 20 chr4 201959379 201959727 -368620 - THE1B LTR MaLR 0 364 1 270 320 119 24 chr4 201959730 201959983 -368364 - L1MEc LINE L1 -6015 381 105 204 143 24 0 chr4 201959985 201960027 -368320 + T-rich Low_complexity Low_complexity 4 46 0 378 285 21 21 chr4 201960137 201960421 -367926 - L1MEc LINE L1 -4079 2317 2034 523 272 115 36 chr4 201960439 201960744 -367603 + L1M4 LINE L1 4050 4378 -1768 1092 250 30 114 chr4 201960745 201961633 -366714 + L1MC4 LINE L1 6811 7550 -258 230 258 0 0 chr4 201961932 201961994 -366353 + T-rich Low_complexity Low_complexity 1 62 0 215 347 28 0 chr4 201963353 201963425 -364922 - L2 LINE L2 -47 3266 3193 2483 157 39 0 chr4 201963732 201964145 -364202 - MER57B LTR ERV1 -5 429 1 846 312 35 23 chr4 201964447 201964793 -363554 - LTR16B LTR ERVL -6 458 109 3943 161 75 42 chr4 201964800 201965674 -362673 + MER4D LTR ERV1 1 903 0 249 284 158 56 chr4 201966440 201966725 -361622 + MLT1J2 LTR MaLR 137 450 0 345 313 119 11 chr4 201968440 201968616 -359731 + MLT1J LTR MaLR 38 232 -279 519 292 40 32 chr4 201969173 201969450 -358897 - L1ME3 LINE L1 0 6162 5884 1639 199 3 3 chr4 201969934 201970240 -358107 - AluJb SINE Alu -6 306 1 198 91 61 30 chr4 201970269 201970335 -358012 + (TA)n Simple_repeat Simple_repeat 2 69 0 2615 187 48 45 chr4 201970822 201971426 -356921 + L1MA6 LINE L1 5694 6299 -1 23 0 0 0 chr4 201972384 201972407 -355940 + AT_rich Low_complexity Low_complexity 1 23 0 1950 170 39 18 chr4 201973128 201973215 -355132 - MER1B DNA MER1_type -2375 337 253 1912 223 40 67 chr4 201973215 201973784 -354563 + MLT2B3 LTR ERVL 1 554 0 1950 170 39 18 chr4 201973784 201974026 -354321 - MER1B DNA MER1_type -2459 253 1 908 185 19 123 chr4 201974026 201974334 -354013 - MER93b LTR ERV1 0 373 98 2714 159 34 28 chr4 201974709 201974887 -353460 - MER61D LTR ERV1 0 501 326 1996 135 3 0 chr4 201974887 201975176 -353171 - AluSg SINE Alu -19 291 2 2714 159 34 28 chr4 201975176 201975495 -352852 - MER61D LTR ERV1 -175 326 1 11044 180 40 53 chr4 201975496 201975761 -352586 - HUERS-P3b LTR ERV1 -1 6995 6728 180 0 0 0 chr4 201975761 201975781 -352566 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 11044 180 40 53 chr4 201975781 201978239 -350108 - HUERS-P3b LTR ERV1 -268 6728 4241 2007 140 30 33 chr4 201978239 201978604 -349743 - THE1B LTR MaLR 0 364 1 11044 180 40 53 chr4 201978604 201980055 -348292 - HUERS-P3b LTR ERV1 -2755 4241 2773 2207 71 3 51 chr4 201980055 201980366 -347981 - AluY SINE Alu -15 296 1 11044 180 40 53 chr4 201980366 201980994 -347353 - HUERS-P3b LTR ERV1 -4223 2773 609 863 184 66 124 chr4 201980993 201981497 -346850 - MER61D-int LTR ERV1 -2596 492 195 * 2679 153 5 2 chr4 201981497 201981897 -346450 - MER61D LTR ERV1 -100 401 1 22 80 0 0 chr4 201982625 201982675 -345672 + AT_rich Low_complexity Low_complexity 1 50 0 492 231 0 0 chr4 201983101 201983205 -345142 - FRAM SINE Alu -10 166 63 270 175 48 16 chr4 201983205 201983268 -345079 + LTR68 LTR ERV1 23 87 -653 1151 227 47 27 chr4 201983455 201983754 -344593 + LTR68 LTR ERV1 309 613 -127 28 0 0 0 chr4 201983853 201983881 -344466 + AT_rich Low_complexity Low_complexity 1 28 0 12137 231 27 24 chr4 201983980 201988659 -339688 - L1PB3 LINE L1 -11 6859 2153 4551 160 40 34 chr4 201988645 201989638 -338709 - L1PB3 LINE L1 -5066 1797 799 * 3876 282 38 30 chr4 201989639 201991331 -337016 - L1PB3 LINE L1 -5224 1639 3 29 70 0 0 chr4 201991455 201991512 -336835 + AT_rich Low_complexity Low_complexity 1 57 0 208 211 0 0 chr4 201993213 201993251 -335096 + GA-rich Low_complexity Low_complexity 3 40 0 545 238 81 28 chr4 201993617 201993865 -334482 + LTR37B LTR ERV1 208 468 0 458 103 0 0 chr4 201994305 201994373 -333974 + AluS SINE Alu 2 69 -244 1028 172 72 0 chr4 202194373 202194553 -133794 - AluJo SINE Alu -119 193 1 9859 192 53 72 chr4 202194553 202195842 -132505 - L1M2 LINE L1 -700 5848 4536 288 271 0 0 chr4 202195842 202195901 -132446 - MER2 DNA MER2_type -1 344 286 356 172 16 0 chr4 202195908 202195972 -132375 + MER2 DNA MER2_type 281 345 0 328 237 32 11 chr4 202195972 202196065 -132282 - MER2 DNA MER2_type -250 95 1 9859 192 53 72 chr4 202196065 202198284 -130063 - L1M2 LINE L1 -2016 4532 2187 610 284 58 26 chr4 202198873 202199063 -129284 + MER91A DNA MER1_type 1 196 0 738 314 77 41 chr4 202199065 202199482 -128865 + MLT1K LTR MaLR 147 578 -10 279 296 0 10 chr4 202200327 202200425 -127922 - LTR67 LTR ERVL -34 523 427 1060 194 57 114 chr4 202200950 202201337 -127010 + MLT1A1 LTR MaLR 1 365 0 1481 183 52 117 chr4 202201661 202202198 -126149 + MLT1D LTR MaLR 1 502 -3 295 130 26 0 chr4 202202428 202202505 -125842 + (TA)n Simple_repeat Simple_repeat 2 80 0 242 321 66 0 chr4 202202992 202203098 -125249 + MIR SINE MIR 80 192 -70 194 308 26 13 chr4 202203123 202203201 -125146 - MIR SINE MIR -16 246 168 310 319 26 17 chr4 202203274 202203390 -124957 - MIR SINE MIR -122 140 24 713 200 0 0 chr4 202203806 202203931 -124416 + FLAM_C SINE Alu 1 125 -18 198 296 153 0 chr4 202205560 202205658 -122689 + MIR SINE MIR 80 192 -70 409 289 168 32 chr4 202205760 202205950 -122397 - MIR SINE MIR -23 239 24 258 104 125 0 chr4 202206251 202206299 -122048 + L1M2 LINE L1 5698 5751 -549 324 223 18 62 chr4 202206415 202206527 -121820 + MLT1I LTR MaLR 63 169 -240 924 174 68 11 chr4 202206528 202206718 -121629 + MER67C LTR ERV1 203 403 -307 319 246 172 8 chr4 202206730 202206864 -121483 + MER67D LTR ERV1 356 511 -3 312 290 56 9 chr4 202207213 202207320 -121027 - MIR SINE MIR -71 191 80 386 257 0 19 chr4 202207466 202207571 -120776 + L1MA6 LINE L1 7 109 -6921 4317 254 49 16 chr4 202207630 202211029 -117318 + L1MA6 LINE L1 953 4480 -2626 1444 221 38 3 chr4 202211040 202211330 -117017 + AluJo SINE Alu 8 307 -5 8440 176 25 5 chr4 202211330 202213201 -115146 + L1MA6 LINE L1 4478 6390 -743 2430 92 148 5 chr4 202213203 202213595 -114752 + LTR7 LTR ERV1 1 448 -2 18928 91 27 19 chr4 202213597 202216559 -111788 + HERVH LTR ERV1 1 2987 -4726 5902 80 2 2 chr4 202216553 202217407 -110940 + HERVH LTR ERV1 3140 3993 -3720 * 1268 104 0 0 chr4 202217409 202217592 -110755 + HERVH LTR ERV1 4488 4670 -3043 * 3469 154 2 3 chr4 202217589 202218162 -110185 + HERVH LTR ERV1 4575 5146 -2567 1221 153 19 0 chr4 202218166 202218382 -109965 + HERVH LTR ERV1 5600 5819 -1894 2339 90 45 13 chr4 202218382 202218760 -109587 + HERVH LTR ERV1 7324 7713 0 2260 80 128 18 chr4 202218760 202219158 -109189 + LTR7 LTR ERV1 1 442 -8 2042 138 28 3 chr4 202219166 202219520 -108827 + L1MA6 LINE L1 6388 6750 -510 822 140 63 0 chr4 202219520 202219663 -108684 - MSTB LTR MaLR 0 426 275 777 161 121 0 chr4 202219663 202219812 -108535 - MSTB LTR MaLR -261 167 1 1002 155 42 5 chr4 202219824 202220017 -108330 + L1MA6 LINE L1 6769 6968 -292 340 154 13 13 chr4 202220022 202220100 -108247 + L1MA6 LINE L1 7183 7260 0 1046 202 49 51 chr4 202220605 202221015 -107332 + LTR37A LTR ERV1 18 426 0 449 318 8 8 chr4 202221019 202221148 -107199 + MER5A DNA MER1_type 60 188 -1 1997 95 0 4 chr4 202221672 202221946 -106401 - AluY SINE Alu 0 311 39 766 167 141 0 chr4 202222233 202222389 -105958 - MER58A DNA MER1_type -13 211 34 55 40 0 0 chr4 202223504 202223580 -104767 + AT_rich Low_complexity Low_complexity 1 76 0 4502 126 12 23 chr4 202223580 202223690 -104657 - L1PA16 LINE L1 -9 6157 6047 1869 152 133 13 chr4 202223690 202224072 -104275 + MSTA LTR MaLR 1 428 0 4502 126 12 23 chr4 202224072 202224330 -104017 - L1PA16 LINE L1 -119 6047 5787 2037 165 86 10 chr4 202224330 202224725 -103622 + MSTA LTR MaLR 1 425 -3 4502 126 12 23 chr4 202224725 202225128 -103219 - L1PA16 LINE L1 -379 5787 5394 354 297 27 34 chr4 202225879 202226027 -102320 - MER5A DNA MER1_type -6 183 37 * 358 325 33 20 chr4 202225897 202226048 -102299 + MER5A DNA MER1_type 36 188 -1 252 244 142 47 chr4 202226860 202226987 -101360 - MIR SINE MIR -4 258 120 325 257 109 128 chr4 202227534 202228012 -100335 + L1M2 LINE L1 418 886 -5963 306 331 57 32 chr4 202228801 202228925 -99422 + MIR SINE MIR 6 132 -130 204 303 26 13 chr4 202229426 202229502 -98845 - MIR SINE MIR 0 262 186 2776 156 81 19 chr4 202229528 202230161 -98186 - L1MB7 LINE L1 -16 6168 5497 541 283 26 7 chr4 202230162 202230314 -98033 - MIR SINE MIR -91 171 17 240 157 39 0 chr4 202230505 202230556 -97791 + GA-rich Low_complexity Low_complexity 2 54 0 839 165 34 17 chr4 202231256 202231432 -96915 - L1ME LINE L1 -509 5724 5546 * 3790 249 127 38 chr4 202231428 202231489 -96858 - L1ME LINE L1 -922 5293 5239 1597 110 0 0 chr4 202231489 202231698 -96649 - AluY SINE Alu -22 289 81 3790 249 127 38 chr4 202231698 202233516 -94831 - L1ME LINE L1 -976 5239 3584 1380 107 74 5 chr4 202233516 202233731 -94616 + MER30 DNA MER1_type 1 230 0 3790 249 127 38 chr4 202233731 202234144 -94203 - L1ME LINE L1 -2631 3584 3209 1827 88 62 22 chr4 202234144 202234444 -93903 - AluSq SINE Alu 0 311 1 3790 249 127 38 chr4 202234444 202234718 -93629 - L1ME LINE L1 -3006 3209 2435 379 262 86 45 chr4 202235166 202235387 -92960 - L1ME LINE L1 -6131 265 36 1670 164 7 11 chr4 202235990 202236277 -92070 - AluJo SINE Alu -9 303 18 26 30 0 0 chr4 202236878 202236911 -91436 + AT_rich Low_complexity Low_complexity 1 33 0 21 71 0 0 chr4 202236942 202236984 -91363 + AT_rich Low_complexity Low_complexity 1 42 0 358 177 0 13 chr4 202237176 202237255 -91092 - L1MB3 LINE L1 -13 6170 6093 1739 164 48 48 chr4 202237255 202237875 -90472 - L1M3 LINE L1 -624 5556 4945 23 33 0 0 chr4 202237878 202237908 -90439 + AT_rich Low_complexity Low_complexity 1 30 0 240 308 32 45 chr4 202238011 202238167 -90180 - L1MC5 LINE L1 -76 7885 7732 2271 87 3 10 chr4 202238510 202238809 -89538 + AluSg SINE Alu 1 297 -13 1003 188 6 1 chr4 202238966 202239151 -89196 - FRAM SINE Alu -10 166 1 857 219 155 5 chr4 202239163 202239404 -88943 + L1MC4a LINE L1 6075 7808 0 24 53 0 0 chr4 202240461 202240499 -87848 + AT_rich Low_complexity Low_complexity 1 38 0 263 283 159 7 chr4 202241551 202241689 -86658 + L1ME4a LINE L1 5537 5695 -426 274 184 0 184 chr4 202241852 202241891 -86456 + MER33 DNA MER1_type 1 13 -2572 1763 175 7 10 chr4 202241891 202242188 -86159 - AluJo SINE Alu -8 304 9 274 184 0 184 chr4 202242188 202242246 -86101 + MER33 DNA MER1_type 13 80 -244 243 306 141 6 chr4 202242701 202242871 -85476 + L1MC4 LINE L1 6824 7016 -1026 615 199 86 13 chr4 202243338 202243489 -84858 + MER112 DNA MER1_type 1 162 -98 268 128 0 0 chr4 202243551 202243590 -84757 + MER112 DNA MER1_type 197 235 -25 246 236 38 66 chr4 202244475 202244581 -83766 + L1ME4a LINE L1 5979 6081 -40 962 234 55 75 chr4 202245262 202245660 -82687 - L1MC4a LINE L1 -1825 5983 5594 24 0 0 0 chr4 202245744 202245768 -82579 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 202245816 202245840 -82507 + AT_rich Low_complexity Low_complexity 1 24 0 305 149 0 0 chr4 202245885 202245932 -82415 - tRNA-Arg-CGC tRNA tRNA -28 48 2 28 0 0 0 chr4 202246865 202246893 -81454 + AT_rich Low_complexity Low_complexity 1 28 0 1041 137 13 0 chr4 202248221 202248374 -79973 + FRAM SINE Alu 1 152 -24 2068 134 0 0 chr4 202248712 202249010 -79337 - AluSx SINE Alu -14 298 1 193 163 41 41 chr4 202250805 202250854 -77493 + L2 LINE L2 2495 2543 -771 43431 46 10 0 chr4 202251073 202257150 -71197 + L1PA4 LINE L1 22 6155 0 656 179 0 0 chr4 202257150 202257262 -71085 - L1MC/D LINE L1 -559 5800 5689 398 148 327 0 chr4 202257731 202257832 -70515 + MER20 DNA MER1_type 5 138 -81 484 285 39 34 chr4 202257945 202258124 -70223 - MER5A DNA MER1_type -7 182 3 383 310 48 7 chr4 202258488 202258633 -69714 - L3 LINE CR1 -1047 530 380 4100 23 0 0 chr4 202258633 202259072 -69275 + SVA Other Other 944 1382 -4 680 198 147 65 chr4 202259137 202259491 -68856 - L1ME LINE L1 -5082 988 606 1077 162 155 75 chr4 202259636 202259759 -68588 + AluJo SINE Alu 6 118 -194 532 127 0 13 chr4 202259759 202259838 -68509 + MADE1 DNA Mariner 1 78 -2 1077 162 155 75 chr4 202259838 202259992 -68355 + AluJo SINE Alu 118 305 -7 748 224 34 45 chr4 202259992 202260171 -68176 + FRAM SINE Alu 1 174 -2 913 123 26 7 chr4 202260235 202260389 -67958 - MER53 DNA DNA 0 189 33 24 0 0 0 chr4 202261227 202261251 -67096 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr4 202261317 202261350 -66997 + AT_rich Low_complexity Low_complexity 1 33 0 182 196 109 0 chr4 202262059 202262105 -66242 + L2 LINE L2 3222 3272 0 2335 104 0 0 chr4 202262433 202262732 -65615 + AluSx SINE Alu 2 300 -12 5493 249 61 17 chr4 202263111 202265012 -63335 + L1 LINE L1 2958 4942 -1204 734 179 11 50 chr4 202265164 202265343 -63004 + L1MB4 LINE L1 6007 6178 -2 496 288 0 0 chr4 202268019 202268328 -60019 + (GGGTG)n Simple_repeat Simple_repeat 1 309 0 227 171 0 0 chr4 202271904 202271945 -56402 + C-rich Low_complexity Low_complexity 1 41 0 11211 310 41 17 chr4 202272306 202273888 -54459 - MER41D-int LTR ERV1 -1593 6163 4620 2728 110 3 27 chr4 202273888 202274051 -54296 + THE1B LTR MaLR 1 166 -198 1741 147 7 0 chr4 202274051 202274330 -54017 - AluSx SINE Alu -9 303 23 2728 110 3 27 chr4 202274330 202274539 -53808 + THE1B LTR MaLR 166 364 0 11211 310 41 17 chr4 202274539 202277117 -51230 - MER41D-int LTR ERV1 -3136 4620 1903 8538 45 0 1 chr4 202277122 202278872 -49475 - L1PA4 LINE L1 0 6155 4405 7630 36 1 0 chr4 202278872 202279779 -48568 + L1PA4 LINE L1 3506 4413 -1733 770 314 60 82 chr4 202279784 202280434 -47913 - MER41D-int LTR ERV1 -5852 1904 1269 257 303 49 42 chr4 202280628 202280770 -47577 - MER41D-int LTR ERV1 -7047 709 567 263 256 145 8 chr4 202281039 202281156 -47191 - MER41D-int LTR ERV1 -5566 380 248 707 297 16 10 chr4 202281388 202281580 -46767 - MER41D LTR ERV1 0 557 365 1827 171 7 0 chr4 202282169 202282479 -45868 - AluSx SINE Alu 0 312 1 750 157 104 0 chr4 202282922 202283056 -45291 + MER4B LTR ERV1 3 150 -460 6045 141 32 2 chr4 202283083 202284095 -44252 - L1MA2 LINE L1 -2 6302 5261 1932 133 188 118 chr4 202284095 202284134 -44213 - THE1C LTR MaLR 0 428 393 2830 0 3 3 chr4 202284134 202284441 -43906 + AluYa5 SINE Alu 1 307 -4 1932 133 188 118 chr4 202284441 202284472 -43875 - THE1C LTR MaLR -35 393 366 1945 115 4 7 chr4 202284472 202284751 -43596 - AluSg1 SINE Alu -30 279 2 1932 133 188 118 chr4 202284751 202285079 -43268 - THE1C LTR MaLR -62 366 1 7029 270 57 15 chr4 202285094 202285735 -42612 - L1M4 LINE L1 -894 5252 4640 1980 121 14 7 chr4 202285735 202286032 -42315 - AluSg1 SINE Alu -10 299 1 7029 270 57 15 chr4 202286032 202286386 -41961 - L1M4 LINE L1 -1506 4640 4303 1802 212 64 7 chr4 202286386 202286791 -41556 - MSTA LTR MaLR 0 428 1 7414 213 28 19 chr4 202286791 202288427 -39920 - MSTA-int LTR MaLR 0 1651 1 1836 209 51 12 chr4 202288427 202288839 -39508 - MSTA LTR MaLR 0 428 1 7029 270 57 15 chr4 202288839 202289203 -39144 - L1M4 LINE L1 -1843 4303 3956 1989 151 0 0 chr4 202289203 202289515 -38832 - AluSx SINE Alu 0 312 1 7029 270 57 15 chr4 202289515 202290961 -37386 - L1M4 LINE L1 -2190 3956 2323 3448 32 17 0 chr4 202290956 202291364 -36983 + L1P2 LINE L1 5267 5681 -473 * 10698 198 26 19 chr4 202291637 202293940 -34407 + L1PB1 LINE L1 3016 5334 -812 3563 218 2 1 chr4 202293935 202294733 -33614 - L1PB1 LINE L1 -796 5350 4552 * 5360 117 18 2 chr4 202294731 202295532 -32815 + L1PB1 LINE L1 5339 6151 0 1644 117 9 16 chr4 202295535 202296002 -32345 + L1PA14 LINE L1 5315 5874 -287 3694 128 60 9 chr4 202296002 202296582 -31765 + LTR66 LTR ERVL 1 610 0 1644 117 9 16 chr4 202296582 202296857 -31490 + L1PA14 LINE L1 5874 6149 -12 376 274 0 0 chr4 202297012 202297107 -31240 + LTR23-int LTR ERV1 3247 3341 -2990 330 233 0 35 chr4 202297176 202297262 -31085 + LTR23-int LTR ERV1 3364 3446 -2885 445 226 36 53 chr4 202297357 202297684 -30663 + LTR23-int LTR ERV1 1707 2093 -3000 2021 106 0 0 chr4 202297741 202298023 -30324 - AluSx SINE Alu -13 299 18 25 31 0 0 chr4 202298220 202298252 -30095 + AT_rich Low_complexity Low_complexity 1 32 0 3172 145 64 2 chr4 202298285 202298829 -29518 + LTR23-int LTR ERV1 4985 5562 -1975 16466 183 31 28 chr4 202298845 202302066 -26281 + L1M1 LINE L1 24 3254 -4311 728 100 17 8 chr4 202302440 202302560 -25787 + 5S rRNA rRNA 1 121 0 473 216 15 0 chr4 202303347 202303558 -24789 + CT-rich Low_complexity Low_complexity 1 214 0 1821 178 78 25 chr4 202303562 202303961 -24386 - LTR2B LTR ERV1 0 490 71 264 189 0 0 chr4 202304178 202304252 -24095 + (TG)n Simple_repeat Simple_repeat 1 74 0 805 116 0 8 chr4 202304999 202305120 -23227 + 5S rRNA rRNA 2 121 0 266 250 34 11 chr4 202305656 202305744 -22603 + CT-rich Low_complexity Low_complexity 2 91 0 252 149 0 0 chr4 202305748 202305795 -22552 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 240 222 0 0 chr4 202305830 202305902 -22445 + (TG)n Simple_repeat Simple_repeat 1 72 0 287 231 9 0 chr4 202306982 202307090 -21257 + CT-rich Low_complexity Low_complexity 1 109 0 282 270 17 0 chr4 202307138 202307253 -21094 + (TG)n Simple_repeat Simple_repeat 2 118 0 245 186 0 47 chr4 202308053 202308139 -20208 + CT-rich Low_complexity Low_complexity 1 82 0 474 275 205 20 chr4 202308223 202308525 -19822 + LSAU Satellite Satellite 141 498 0 426 230 7 22 chr4 202309954 202310093 -18254 + LSAU Satellite Satellite 2 138 -360 341 251 7 0 chr4 202311097 202311256 -17091 + CT-rich Low_complexity Low_complexity 1 160 0 457 182 64 144 chr4 202311296 202311532 -16815 + Tigger1 DNA MER2_type 2202 2418 0 27 0 0 0 chr4 202311908 202311935 -16412 + AT_rich Low_complexity Low_complexity 1 27 0 1659 147 34 27 chr4 202312212 202312504 -15843 + AluSx SINE Alu 11 304 -8 29 90 0 0 chr4 202315868 202315946 -12401 + AT_rich Low_complexity Low_complexity 1 78 0 35 24 0 0 chr4 202316333 202316375 -11972 + AT_rich Low_complexity Low_complexity 1 42 0 1714 149 24 20 chr4 202316449 202316744 -11603 + AluSx SINE Alu 1 296 -16 1181 193 68 88 chr4 202316952 202317247 -11100 - AluJb SINE Alu -13 289 1 1376 197 26 40 chr4 202317437 202317741 -10606 - AluJo SINE Alu -12 300 1 258 259 98 18 chr4 202317811 202317923 -10424 + L1MC5 LINE L1 7791 7911 -50 359 176 39 59 chr4 202318051 202318153 -10194 + L1ME3A LINE L1 6069 6168 -2 462 198 12 0 chr4 202318369 202318450 -9897 + AluJ/FLAM SINE Alu 2 83 -229 479 335 19 0 chr4 202318836 202318997 -9350 - MER5B DNA MER1_type -14 164 1 1421 192 38 7 chr4 202319404 202319695 -8652 + AluJb SINE Alu 2 301 -11 1913 164 118 3 chr4 202319914 202320297 -8050 - MSTA LTR MaLR -1 427 1 268 248 17 94 chr4 202321387 202321504 -6843 + MIR SINE MIR 153 260 -2 224 331 177 8 chr4 202321732 202321862 -6485 + MER5A DNA MER1_type 31 182 -7 1756 148 7 7 chr4 202321865 202322163 -6184 + AluSq SINE Alu 1 298 -15 270 106 0 0 chr4 202322166 202322213 -6134 + (GAAA)n Simple_repeat Simple_repeat 4 50 0 245 253 71 30 chr4 202322235 202322334 -6013 - MER5B DNA MER1_type -1 177 75 4795 204 21 18 chr4 202322362 202324323 -4024 + L1PB4 LINE L1 4190 6156 0 2258 103 0 0 chr4 202324325 202324635 -3712 + AluSg SINE Alu 1 310 0 31 44 0 0 chr4 202324701 202324746 -3601 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr4 202325075 202325096 -3251 + AT_rich Low_complexity Low_complexity 1 21 0 3722 209 65 20 chr4 202326332 202327700 -647 + L1MA9 LINE L1 4255 5697 -615 1987 220 38 30 chr4 202327725 202328229 -118 + L1MA9 LINE L1 5805 6312 0